Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	[tCw_to_G+tCw_to_T]_per_mut	tCw_to_G+tCw_to_T	BH_Fisher_p-value_tCw	APOBEC_enrich	tCw_to_G_enrich	tCw_to_T_enrich	p-value_GvT_skew	BH_p-value_GvT_skew	APOBEC_MutLoad_MinEstimate	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
SLC6A9	0	genome.wustl.edu	37	chr1	44476442	44476442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	atgggaagcgccagacattgCccaggcccacggcatagccc	12	15	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	1	44476442	44476442	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.362	p.G121D	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	72	0	0	44	19	30.16	-	-	-	T	44476442	C	T	44476442	3	4	1	1	0	0	0	0	1	0	0	0	14780	739	26	4	1806	4	SLC6A9	1	44476442	Missense_Mutation	SNP	C	TCGA-A1-A0SB-01A-11D-A142-09		44476442	204774179	1	1										
DTNB	0	genome.wustl.edu	37	chr2	25678299	25678299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	acagtgctgcagacgggccaCataggaggctatcagcgcat	13	11	1	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	2	25678299	25678299	C	T	SNP	DTNB	ENST00000406818	human	ensembl	69_37n	-1	known	missense	c.1144	p.V382M	1.000	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNB	HGNC	ENSG00000138101	35	0	0	9	9	50	-	-	-	T	25678299	C	T	25678299	3	4	1	1	0	0	0	0	1	0	0	0	4824	478	17	4	779	4	DTNB	2	25678299	Missense_Mutation	SNP	C	TCGA-A1-A0SB-01A-11D-A142-09		25678299	217521074	2	2										
CADM2	0	genome.wustl.edu	37	chr3	85932472	85932472	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	aataggatcgagctggttcgCgcttcctggcatgaattgag	13	8	0	2			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	3	85932472	85932472	C	T	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	silent	c.249	p.R83	0.920	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	57	0	0	22	23	51.11	-	-	-	T	85932472	C	T	85932472	2	4	1	1	0	0	0	0	0	0	0	1	2592	755	27	1		1	CADM2	3	85932472	Silent	SNP	C	TCGA-A1-A0SB-01A-11D-A142-09		85932472	112089958	3	3										
MSH3	0	genome.wustl.edu	37	chr5	80024722	80024722	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gagaagcctgtgatttgctcTttggctgccatcataaaata							TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	5	80024722	80024722	T	-	DEL	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	frame_shift_del	c.1506	p.L503fs	0.998	pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	83	0	0	12	2	14.29	-	-	-	-	80024722	T	-	80024722	7	5	1	1	0	1	0	1	0	0	0	0	9943	1596	56	0	1544	0	MSH3	5	80024722	Frame_Shift_Del	DEL	T	TCGA-A1-A0SB-01A-11D-A142-09		80024722	100890538	4	4										
MYB	0	genome.wustl.edu	37	chr6	135507043	135507044	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	cattcttatttctgcagcatINSatatagcagtgacgaggatg							TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	6	135507043	135507044	-	A	INS	MYB	ENST00000341911	human	ensembl	69_37n	1	known	frame_shift_ins	c.26_27	p.Y10fs	1.000:0.997	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	50	0	0	36	4	10	-	-	-	A	135507044	-	A	135507043	7	5	1	1	0	1	1	0	0	0	0	0	10079	1406	49	0	32	0	MYB	6	135507043	Frame_Shift_Ins	INS	-	TCGA-A1-A0SB-01A-11D-A142-09		135507043	35608024	5	5										
ZNF777	0	genome.wustl.edu	37	chr7	149129243	149129243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gctggtggcgcagcaggtgcGaggggcggctgaagctcttg	20	9	1	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	7	149129243	149129243	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	missense	c.2120	p.S707L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	21	0	0	24	8	25	-	-	-	A	149129243	G	A	149129243	3	1	1	1	0	0	0	0	1	0	0	0	18243	1059	37	1	379	1	ZNF777	7	149129243	Missense_Mutation	SNP	G	TCGA-A1-A0SB-01A-11D-A142-09		149129243	10009420	6	6										
ABLIM1	0	genome.wustl.edu	37	chr10	116247760	116247760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	tagattgcttacagtcgggaTgccaaacggtggagcctgag	14	8	0	2			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	10	116247760	116247760	T	C	SNP	ABLIM1	ENST00000277895	human	ensembl	69_37n	-1	known	missense	c.998	p.H333R	1.000	smart_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204	77	0	0	36	13	26.53	-	-	-	C	116247760	T	C	116247760	3	2	1	1	0	0	0	0	1	0	0	0	94	1464	51	5	1486	5	ABLIM1	10	116247760	Missense_Mutation	SNP	T	TCGA-A1-A0SB-01A-11D-A142-09		116247760	19286987	7	7										
ADAMTS20	0	genome.wustl.edu	37	chr12	43944926	43944926	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gcccgtaggcagtgaagcgaTagtgggttcggaacggcatg	17	8	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	12	43944926	43944926	T	C	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.239	p.Y80C	1.000	pfam_Peptidase_M12B_N	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	50	0	0	19	17	45.95	-	-	-	C	43944926	T	C	43944926	3	2	1	1	0	0	0	0	1	0	0	0	266	1406	49	5	5644	5	ADAMTS20	12	43944926	Missense_Mutation	SNP	T	TCGA-A1-A0SB-01A-11D-A142-09		43944926	89906969	8	8										
SPTB	0	genome.wustl.edu	37	chr14	65266493	65266493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	cttctccacggtgcggtaggTgctgaaggcctgcagctgct	14	12	1	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	14	65266493	65266493	T	C	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.1036	p.T346A	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	22	0	0	13	10	40	-	-	-	C	65266493	T	C	65266493	3	2	1	1	0	0	0	0	1	0	0	0	15209	1696	59	5	6131	5	SPTB	14	65266493	Missense_Mutation	SNP	T	TCGA-A1-A0SB-01A-11D-A142-09		65266493	42083047	9	9										
SOX15	0	genome.wustl.edu	37	chr17	7491739	7491739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gggcaccagcaaggggagggTtgtatggagtgggagagcca	20	6	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	17	7491739	7491739	T	G	SNP	SOX15	ENST00000250055	human	ensembl	69_37n	-1	known	missense	c.659	p.N220T	0.009	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX15	HGNC	ENSG00000129194	64	0	0	58	7	10.77	-	-	-	G	7491739	T	G	7491739	3	3	1	1	0	0	0	0	1	0	0	0	15035	1725	60	5	46	5	SOX15	17	7491739	Missense_Mutation	SNP	T	TCGA-A1-A0SB-01A-11D-A142-09		7491739	73703471	10	10										
ZNF566	0	genome.wustl.edu	37	chr19	36940860	36940860	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gattctatttcataaatttcTttcttcagaaataatttctt							TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	19	36940860	36940860	T	-	DEL	ZNF566	ENST00000392170	human	ensembl	69_37n	-1	known	frame_shift_del	c.279	p.E94fs	0.479	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF566	HGNC	ENSG00000186017	31	0	0	9	2	18.18	-	-	-	-	36940860	T	-	36940860	7	5	1	1	0	1	0	1	0	0	0	0	18093	1606	56	0	984	0	ZNF566	19	36940860	Frame_Shift_Del	DEL	T	TCGA-A1-A0SB-01A-11D-A142-09		36940860	22188123	11	11										
ZNF574	0	genome.wustl.edu	37	chr19	42585066	42585066	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	agcggccatacccatgtccaGactgtggcaaagcgttccgt	11	13	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	19	42585066	42585066	G	A	SNP	ZNF574	ENST00000222339	human	ensembl	69_37n	1	known	missense	c.2578	p.D860N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732	20	0	0	21	10	32.26	-	-	-	A	42585066	G	A	42585066	3	1	1	1	0	0	0	0	1	0	0	0	18102	942	33	2	2310	2	ZNF574	19	42585066	Missense_Mutation	SNP	G	TCGA-A1-A0SB-01A-11D-A142-09	5644206	42585066	16543917	12	12										
OTOR	0	genome.wustl.edu	37	chr20	16730581	16730581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	gccaggacgagatgggagtcGtgggttatttccccaggaac	15	9	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	20	16730581	16730581	G	A	SNP	OTOR	ENST00000246081	human	ensembl	69_37n	1	known	missense	c.289	p.V97M	0.963	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879	57	0	0	36	9	20	-	-	-	A	16730581	G	A	16730581	3	1	1	1	0	0	0	0	1	0	0	0	11381	1145	40	1	299	1	OTOR	20	16730581	Missense_Mutation	SNP	G	TCGA-A1-A0SB-01A-11D-A142-09		16730581	46294939	13	13										
P2RY10	0	genome.wustl.edu	37	chrX	78216689	78216689	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.696464443748666	2.38392857142857	NA	2.38392857142857	1	1	0	acctggaaaactactatatcCttgagacagccaccaatggc	7	12	0	1			TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	X	78216689	78216689	C	T	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	silent	c.672	p.S224	0.092	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	65	0	0	46	10	17.86	-	-	-	T	78216689	C	T	78216689	2	4	1	1	0	0	0	0	0	0	0	1	11420	668	24	4		4	P2RY10	23	78216689	Silent	SNP	C	TCGA-A1-A0SB-01A-11D-A142-09		78216689	77053871	14	14										
SLC44A3	0	genome.wustl.edu	37	chr1	95293148	95293148	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tctgtgtatccaactgccctGaagagcagcttgactccctg	9	13	1	3			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	1	95293148	95293148	G	A	SNP	SLC44A3	ENST00000271227	human	ensembl	69_37n	1	known	missense	c.364	p.E122K	0.691	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036	176	0	0	198	69	25.84	-	-	-	A	95293148	G	A	95293148	3	1	2	1	0	0	0	0	1	0	0	0	14726	1291	45	2	378	2	SLC44A3	1	95293148	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09		95293148	153957473	1	15										
KIRREL	0	genome.wustl.edu	37	chr1	158054332	158054332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tgccaccatcatctggttccGggacgggacgcagcaggagg	15	12	2	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	1	158054332	158054332	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.473	p.R158Q	1.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	41	0	0	112	47	29.56	-	-	-	A	158054332	G	A	158054332	3	1	2	1	0	0	0	0	1	0	0	0	8377	1116	39	1	487	1	KIRREL	1	158054332	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09	62761184	158054332	91196289	2	16										
DCAF8	0	genome.wustl.edu	37	chr1	160210108	160210108	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	acttcaatgcctgaggatgtCtccctcccctcttcagctcc	6	17	4	1			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	1	160210108	160210108	C	T	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	silent	c.564	p.E188	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	63	0	0	100	25	20	-	-	-	T	160210108	C	T	160210108	2	4	2	1	0	0	0	0	0	0	0	1	4308	912	32	2		2	DCAF8	1	160210108	Silent	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09	2155776	160210108	89040513	3	17										
TLR5	0	genome.wustl.edu	37	chr1	223284687	223284688	+	Frame_Shift_Ins	INS	-	-	A													0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	acaaatacatcaggattaggINSagctaggagctggttcctgg							TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	1	223284687	223284688	-	A	INS	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1687_1686	p.P562fs	0.972:0.306	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	94	0	0	43	37	46.25	-	-	-	A	223284688	-	A	223284687	7	5	2	1	0	1	1	0	0	0	0	0	16049	1174	41	0	893	0	TLR5	1	223284687	Frame_Shift_Ins	INS	-	TCGA-A1-A0SD-01A-11D-A10Y-09	63074579	223284687	25965934	4	18										
LRP2	0	genome.wustl.edu	37	chr2	170070247	170070247	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tgttggccccagtggccttaTcaactctttcaatgacctca	7	13	4	1			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	2	170070247	170070247	T	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.5960	p.D1987A	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	150	0	0	171	22	11.4	-	-	-	G	170070247	T	G	170070247	3	3	2	1	0	0	0	0	1	0	0	0	9022	1435	50	5	8183	5	LRP2	2	170070247	Missense_Mutation	SNP	T	TCGA-A1-A0SD-01A-11D-A10Y-09		170070247	73129126	5	19										
STK11IP	0	genome.wustl.edu	37	chr2	220479255	220479255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	cagttcttctaccttcgggcGttcctggttgaaggtgaagc	12	10	2	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	2	220479255	220479255	G	A	SNP	STK11IP	ENST00000413891	human	ensembl	69_37n	1	known	missense	c.433	p.V145I	0.278	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STK11IP	HGNC	ENSG00000144589	146	0	0	199	62	23.66	-	-	-	A	220479255	G	A	220479255	3	1	2	1	0	0	0	0	1	0	0	0	15379	1132	40	1	2979	1	STK11IP	2	220479255	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09	50409008	220479255	22720118	6	20										
CPEB2	0	genome.wustl.edu	37	chr4	15067943	15067943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tcgtgctggacgtgagttccAtaagccattggtaaaggaag	13	7	0	1			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	4	15067943	15067943	A	G	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	missense	c.3044	p.H1015R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	193	0	0	161	48	22.97	-	-	-	G	15067943	A	G	15067943	3	3	2	1	0	0	0	0	1	0	0	0	3831	217	8	5	3099	5	CPEB2	4	15067943	Missense_Mutation	SNP	A	TCGA-A1-A0SD-01A-11D-A10Y-09		15067943	176086333	7	21										
LRBA	0	genome.wustl.edu	37	chr4	151821369	151821369	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	agtatagagcatcagttgaaCctacagaataaaaatgaaga	8	5	1	5			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	4	151821369	151821369	C	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.1756	p.V586F	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	92	0	0	68	20	22.73	-	-	-	A	151821369	C	A	151821369	3	1	2	1	0	0	0	0	1	0	0	0	8997	521	18	4	7015	4	LRBA	4	151821369	Missense_Mutation	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09	136753426	151821369	39332907	8	22										
PCDHA6	0	genome.wustl.edu	37	chr5	140209165	140209165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tgtcctactcgctggtggagCggcgggtgggcgagcgcgcg	20	11	0	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	5	140209165	140209165	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.1489	p.R497W	0.192	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	18	0	0	51	22	30.14	-	-	-	T	140209165	C	T	140209165	3	4	2	1	0	0	0	0	1	0	0	0	11601	759	27	1	1491	1	PCDHA6	5	140209165	Missense_Mutation	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09		140209165	40706095	9	23										
SYNE1	0	genome.wustl.edu	37	chr6	152763259	152763259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tgcgctccaggccatccagtGtgctctccagcttccgcagc	10	17	1	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	6	152763259	152763259	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.3959	p.T1320I	0.814	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	40	0	0	72	20	21.74	-	-	-	A	152763259	G	A	152763259	3	1	2	1	0	0	0	0	1	0	0	0	15537	1377	48	4	22971	4	SYNE1	6	152763259	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09		152763259	18351808	10	24										
CNTFR	0	genome.wustl.edu	37	chr9	34564705	34564705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	atggagcaccagctgagagcCgttgagcaggtcaggggcca	16	10	1	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	9	34564705	34564705	C	T	SNP	CNTFR	ENST00000351266	human	ensembl	69_37n	-1	known	missense	c.211	p.G71S	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTFR	HGNC	ENSG00000122756	54	0	0	122	21	14.58	-	-	-	T	34564705	C	T	34564705	3	4	2	1	0	0	0	0	1	0	0	0	3668	652	23	1	935	1	CNTFR	9	34564705	Missense_Mutation	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09		34564705	106648726	11	25										
GATA3	0	genome.wustl.edu	37	chr10	8115955	8115956	+	Frame_Shift_Ins	INS	-	-	CC													0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ctgtcctttggaccacaccaINScccctccagcatggtcaccg							TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	10	8115955	8115956	-	CC	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1304_1305	p.S437fs	1.000:0.921	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	71	0	0	79	28	26.17	-	-	-	CC	8115956	-	CC	8115955	7	5	2	1	0	1	1	0	0	0	0	0	6305	159	6	0	1322	0	GATA3	10	8115955	Frame_Shift_Ins	INS	-	TCGA-A1-A0SD-01A-11D-A10Y-09		8115955	127418792	12	26										
ANK3	0	genome.wustl.edu	37	chr10	61834851	61834851	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ttcctttgggagttcaggttGgaatggcttctcctcaggca	12	9	3	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	10	61834851	61834851	G	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.5788	p.Q1930E	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	217	0	0	207	171	45.12	-	-	-	C	61834851	G	C	61834851	3	2	2	1	0	0	0	0	1	0	0	0	622	1357	47	4	7686	4	ANK3	10	61834851	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09	53718896	61834851	73699896	13	27										
ZFP91	0	genome.wustl.edu	37	chr11	58381738	58381738	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	agcatttgctgaagaagaaaTatgtatgtccccatccctcc	7	11	0	3			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	11	58381738	58381738	T	A	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1024	p.Y342N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	146	0	0	82	45	35.43	-	-	-	A	58381738	T	A	58381738	3	1	2	1	0	0	0	0	1	0	0	0	17751	1406	49	5	1058	5	ZFP91	11	58381738	Missense_Mutation	SNP	T	TCGA-A1-A0SD-01A-11D-A10Y-09		58381738	76624778	14	28										
SIDT2	0	genome.wustl.edu	37	chr11	117063930	117063930	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	cctacttgttggccattggcAtctgcaacctgctcctttac	7	14	1	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	11	117063930	117063930	A	G	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.2230	p.I744V	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	130	0	0	126	56	30.77	-	-	-	G	117063930	A	G	117063930	3	3	2	1	0	0	0	0	1	0	0	0	14392	217	8	5	2257	5	SIDT2	11	117063930	Missense_Mutation	SNP	A	TCGA-A1-A0SD-01A-11D-A10Y-09	58682192	117063930	17942586	15	29										
ZNF740	0	genome.wustl.edu	37	chr12	53581370	53581370	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ttccgacgggcagttttctcTataggcgcaaggggccccgg	14	12	1	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	12	53581370	53581370	T	C	SNP	ZNF740	ENST00000416904	human	ensembl	69_37n	1	known	missense	c.578	p.L193P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF740	HGNC	ENSG00000139651	80	0	0	119	43	26.54	-	-	-	C	53581370	T	C	53581370	3	2	2	1	0	0	0	0	1	0	0	0	18222	1522	53	5	600	5	ZNF740	12	53581370	Missense_Mutation	SNP	T	TCGA-A1-A0SD-01A-11D-A10Y-09		53581370	80270525	16	30										
WDR72	0	genome.wustl.edu	37	chr15	53907842	53907842	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ttactcctgaatagtcttttAtcattccactattgcataaa	3	9	2	1			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	15	53907842	53907842	A	T	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.2561	p.I854K	0.017	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	106	0	0	57	20	25.97	-	-	-	T	53907842	A	T	53907842	3	4	2	1	0	0	0	0	1	0	0	0	17419	449	16	5	771	5	WDR72	15	53907842	Missense_Mutation	SNP	A	TCGA-A1-A0SD-01A-11D-A10Y-09		53907842	48623550	17	31										
KLK15	0	genome.wustl.edu	37	chr19	51329938	51329938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ccatggtgtttgtcaggcgcCctgggtagctcttgtcacaa	12	11	3	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	19	51329938	51329938	C	T	SNP	KLK15	ENST00000326856	human	ensembl	69_37n	-1	known	missense	c.557	p.G186E	0.593	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	88	0	0	120	35	22.58	-	-	-	T	51329938	C	T	51329938	3	4	2	1	0	0	0	0	1	0	0	0	8456	623	22	4	221	4	KLK15	19	51329938	Missense_Mutation	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09		51329938	7799045	18	32										
ZNF544	0	genome.wustl.edu	37	chr19	58773290	58773290	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	aaaaaccgtatcagtgtattGaatgcagaaaatccttcagg	8	7	2	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	19	58773290	58773290	G	C	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.1318	p.E440Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	106	0	0	125	40	24.24	-	-	-	C	58773290	G	C	58773290	3	2	2	1	0	0	0	0	1	0	0	0	18073	1291	45	2	1332	2	ZNF544	19	58773290	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09	7443352	58773290	355693	19	33										
SNX5	0	genome.wustl.edu	37	chr20	17928176	17928178	+	In_Frame_Del	DEL	CTG	CTG	-													0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tcaaatttctggcagcactcCtgctggtgtgcctcagccaa							TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	20	17928176	17928178	CTG	-	DEL	SNX5	ENST00000377759	human	ensembl	69_37n	-1	known	in_frame_del	c.1032_1030	p.Q344in_frame_del	1.000:1.000:1.000	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX5	HGNC	ENSG00000089006	254	0	0	273	66	19.47	-	-	-	-	17928178	CTG	-	17928176	7	5	2	1	0	1	0	1	0	0	0	0	14994	680	24	0	194	0	SNX5	20	17928176	In_Frame_Del	DEL	CTG	TCGA-A1-A0SD-01A-11D-A10Y-09		17928176	45097344	20	34										
CSTL1	0	genome.wustl.edu	37	chr20	23420938	23420938	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	gctggagaaaccccctgctgCtgctgattgccctggtcctg	12	14	0	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	20	23420938	23420938	C	T	SNP	CSTL1	ENST00000246020	human	ensembl	69_37n	1	known	silent	c.34	p.L12	0.954	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CSTL1	HGNC	ENSG00000125823	88	0	0	160	21	11.6	-	-	-	T	23420938	C	T	23420938	2	4	2	1	0	0	0	0	0	0	0	1	4019	796	28	4		4	CSTL1	20	23420938	Silent	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09	5492762	23420938	39604582	21	35										
CXorf58	0	genome.wustl.edu	37	chrX	23956735	23956735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	tcaagttaaatttctgggtcGtcgatccaagcaagctcaaa	8	9	3	0			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	X	23956735	23956735	G	A	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.857	p.R286H	0.037	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	152	0	0	96	24	20	-	-	-	A	23956735	G	A	23956735	3	1	2	1	0	0	0	0	1	0	0	0	4145	1145	40	1	883	1	CXorf58	23	23956735	Missense_Mutation	SNP	G	TCGA-A1-A0SD-01A-11D-A10Y-09		23956735	131313825	22	36										
CASK	0	genome.wustl.edu	37	chrX	41379771	41379771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	ctcatcaatttcattgttgaTaattgtgagatcgaagtagt	8	5	3	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	X	41379771	41379771	T	C	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.2683	p.I895V	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	165	0	0	127	60	32.09	-	-	-	C	41379771	T	C	41379771	3	2	2	1	0	0	0	0	1	0	0	0	2690	1406	49	5	101	5	CASK	23	41379771	Missense_Mutation	SNP	T	TCGA-A1-A0SD-01A-11D-A10Y-09	17423036	41379771	113890789	23	37										
L1CAM	0	genome.wustl.edu	37	chrX	153132281	153132281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.566860267678416	1.71374527112232	3.71311475409836	1.35022354694486	1	1	0	cccctgagggcgccactgcaCgcggtactgaacctgggggg	16	14	0	2			TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1847727f-ea57-4e2e-84e5-a10e764c9096	44ee7757-ca5e-4616-a3fc-5e30c8b6088c	X	153132281	153132281	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.2260	p.V754M	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	61	0	0	41	13	24.07	-	-	-	T	153132281	C	T	153132281	3	4	2	1	0	0	0	0	1	0	0	0	8642	536	19	1	1563	1	L1CAM	23	153132281	Missense_Mutation	SNP	C	TCGA-A1-A0SD-01A-11D-A10Y-09	111752510	153132281	2138279	24	38										
DCDC2B	0	genome.wustl.edu	37	chr1	32678163	32678163	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	ggccattactatgtggctgtCggagaggatgagttcaagga	15	6	1	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	1	32678163	32678163	C	T	SNP	DCDC2B	ENST00000409358	human	ensembl	69_37n	1	known	silent	c.600	p.V200	0.498	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2B	HGNC	ENSG00000222046	113	0	0	92	22	19.3	-	-	-	T	32678163	C	T	32678163	2	4	3	1	0	0	0	0	0	0	0	1	4317	871	31	1		1	DCDC2B	1	32678163	Silent	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09		32678163	216572458	1	39										
SYDE2	0	genome.wustl.edu	37	chr1	85656315	85656315	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gagtactctgatatagccaaTtgcgtttctttgaaacagtg	9	7	2	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	1	85656315	85656315	T	C	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	missense	c.866	p.N289S	0.999	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	155	0	0	72	13	15.29	-	-	-	C	85656315	T	C	85656315	3	2	3	1	0	0	0	0	1	0	0	0	15528	1493	52	5	2742	5	SYDE2	1	85656315	Missense_Mutation	SNP	T	TCGA-A1-A0SE-01A-11D-A099-09	52978152	85656315	163594306	2	40										
KLHL20	0	genome.wustl.edu	37	chr1	173725095	173725095	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gaggctaaaaactacctcctAttgccgcaagaacgaccact	7	13	0	1			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	1	173725095	173725095	A	G	SNP	KLHL20	ENST00000209884	human	ensembl	69_37n	1	known	silent	c.885	p.L295	0.162	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321	182	0	0	165	42	20.19	-	-	-	G	173725095	A	G	173725095	2	3	3	1	0	0	0	0	0	0	0	1	8428	436	16	5		5	KLHL20	1	173725095	Silent	SNP	A	TCGA-A1-A0SE-01A-11D-A099-09	88068780	173725095	75525526	3	41										
APLF	0	genome.wustl.edu	37	chr2	68765324	68765324	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	tctgaaggaaacaaggtcaaGaggacatcctgcatgtatgg	12	7	2	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	2	68765324	68765324	G	A	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	silent	c.1125	p.K375	0.981	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	67	0	0	43	7	14	-	-	-	A	68765324	G	A	68765324	2	1	3	1	0	0	0	0	0	0	0	1	777	933	33	2		2	APLF	2	68765324	Silent	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09		68765324	174434049	4	42										
IMPDH2	0	genome.wustl.edu	37	chr3	49066745	49066745	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gctgtgagtccgtcgtctggCacgtaggacgtgcccccact	13	14	1	1			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	3	49066745	49066745	C	T	SNP	IMPDH2	ENST00000326739	human	ensembl	69_37n	-1	known	silent	c.39	p.V13	0.995	NULL	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_2Npropane_dOase,pfam_FMN-dep_DH,pfam_NanE,smart_Cysta_beta_synth_core,pirsf_IMP_DH-rel,tigrfam_IMP_DH	-	no_errors	IMPDH2	HGNC	ENSG00000178035	41	0	0	44	12	21.43	-	-	-	T	49066745	C	T	49066745	2	4	3	1	0	0	0	0	0	0	0	1	7781	697	25	4		4	IMPDH2	3	49066745	Silent	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09		49066745	148955685	5	43										
LRIG1	0	genome.wustl.edu	37	chr3	66463429	66463429	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	atcagccgaatcctgttccgAttgaggtccctaaagagatg	10	10	1	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	3	66463429	66463429	A	G	SNP	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	silent	c.657	p.N219	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	83	0	0	84	25	22.94	-	-	-	G	66463429	A	G	66463429	2	3	3	1	0	0	0	0	0	0	0	1	9010	330	12	5		5	LRIG1	3	66463429	Silent	SNP	A	TCGA-A1-A0SE-01A-11D-A099-09	17396684	66463429	131559001	6	44										
C3orf38	0	genome.wustl.edu	37	chr3	88205481	88205481	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gaaatgtgcatcttctcctcAtgggctggttatggttggag	13	7	3	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	3	88205481	88205481	A	T	SNP	C3orf38	ENST00000318887	human	ensembl	69_37n	1	known	missense	c.686	p.H229L	1.000	NULL	NULL	-	no_errors	C3orf38	HGNC	ENSG00000179021	180	0	0	125	23	15.54	-	-	-	T	88205481	A	T	88205481	3	4	3	1	0	0	0	0	1	0	0	0	2248	217	8	5	696	5	C3orf38	3	88205481	Missense_Mutation	SNP	A	TCGA-A1-A0SE-01A-11D-A099-09	21742052	88205481	109816949	7	45										
MRPS18B	0	genome.wustl.edu	37	chr6	30587563	30587563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	agggtggtgtacccccacagCggactcggaagacatgtatt	13	10	0	1			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	6	30587563	30587563	C	T	SNP	MRPS18B	ENST00000259873	human	ensembl	69_37n	1	known	missense	c.265	p.R89W	0.642	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568	82	0	0	34	16	32	-	-	-	T	30587563	C	T	30587563	3	4	3	1	0	0	0	0	1	0	0	0	9901	759	27	1	275	1	MRPS18B	6	30587563	Missense_Mutation	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09		30587563	140527504	8	46										
MED23	0	genome.wustl.edu	37	chr6	131948806	131948806	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	aaaagcctcttctataacttCcgttttctgtaaaaaaaaaa	3	8	3	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	6	131948806	131948806	C	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.46	p.E16*	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	233	0	0	91	42	31.34	-	-	-	A	131948806	C	A	131948806	4	1	3	1	0	0	0	0	0	1	0	0	9512	864	30	2	4201	2	MED23	6	131948806	Nonsense_Mutation	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09	101361243	131948806	39166261	9	47										
WDR91	0	genome.wustl.edu	37	chr7	134890705	134890705	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	cgagtcccccaggcggtccaTgttggagacataaggaggca	14	11	0	1			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	7	134890705	134890705	T	C	SNP	WDR91	ENST00000354475	human	ensembl	69_37n	-1	known	missense	c.700	p.M234V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875	166	1	0.6	104	34	24.64	-	-	-	C	134890705	T	C	134890705	3	2	3	1	0	0	0	0	1	0	0	0	17435	1464	51	5	1587	5	WDR91	7	134890705	Missense_Mutation	SNP	T	TCGA-A1-A0SE-01A-11D-A099-09		134890705	24247958	10	48										
WDR86	0	genome.wustl.edu	37	chr7	151093204	151093204	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	ccccggaactcccgggacatCtgccccttgtccacactcca	7	20	1	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	7	151093204	151093204	C	T	SNP	WDR86	ENST00000469830	human	ensembl	69_37n	-1	putative	silent	c.384	p.Q128	0.129	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR86	HGNC	ENSG00000187260	21	0	0	18	4	18.18	-	-	-	T	151093204	C	T	151093204	2	4	3	1	0	0	0	0	0	0	0	1	17431	912	32	2		2	WDR86	7	151093204	Silent	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09	16202499	151093204	8045459	11	49										
SDR16C5	0	genome.wustl.edu	37	chr8	57228816	57228816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gttcttccgtggctttgggaGtaaggcaaaaatcatagcct	11	8	2	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	8	57228816	57228816	G	A	SNP	SDR16C5	ENST00000303749	human	ensembl	69_37n	-1	known	missense	c.91	p.L31F	0.001	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786	78	0	0	58	33	35.87	-	-	-	A	57228816	G	A	57228816	3	1	3	1	0	0	0	0	1	0	0	0	14059	1029	36	4	862	4	SDR16C5	8	57228816	Missense_Mutation	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09		57228816	89135206	12	50										
ZFHX4	0	genome.wustl.edu	37	chr8	77620129	77620129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	ggtggctcacattaaagaagGgggcaaaagcaatgagtgga	15	5	1	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	8	77620129	77620129	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2939	p.G980V	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	107	0	0	51	17	25	-	-	-	T	77620129	G	T	77620129	3	4	3	1	0	0	0	0	1	0	0	0	17731	1232	43	4	2945	4	ZFHX4	8	77620129	Missense_Mutation	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09	20391313	77620129	68743893	13	51										
PTCH1	0	genome.wustl.edu	37	chr9	98220334	98220334	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gggttcagaaggaagacagcGcacacgaggaatgtgcaggc	16	8	1	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	9	98220334	98220334	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	silent	c.3129	p.C1043	0.829	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	81	0	0	79	12	13.04	-	-	-	A	98220334	G	A	98220334	2	1	3	1	0	0	0	0	0	0	0	1	12810	1079	38	1		1	PTCH1	9	98220334	Silent	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09		98220334	42993097	14	52										
FAM102A	0	genome.wustl.edu	37	chr9	130712790	130712790	+	Missense_Mutation	SNP	T	T	A													0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	tggagcccgagcccgcaaacTcggccaggttcaagtcagcg							TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	9	130712790	130712790	T	A	SNP	FAM102A	ENST00000373095	human	ensembl	69_37n	-1	known	missense	c.326	p.E109V	1.000	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106	49	0	0	51	12	18.75	-	-	-	A	130712790	T	A	130712790	3	1	3	1	0	0	0	0	1	0	0	0	5422	1551	54	5	860	5	FAM102A	9	130712790	Missense_Mutation	SNP	T	TCGA-A1-A0SE-01A-11D-A099-09	32492456	130712790	10500641	15	53	1	2								
FAM102A	0	genome.wustl.edu	37	chr9	130712791	130712791	+	Nonsense_Mutation	SNP	C	C	A													0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	ggagcccgagcccgcaaactCggccaggttcaagtcagcga							TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	9	130712791	130712791	C	A	SNP	FAM102A	ENST00000373095	human	ensembl	69_37n	-1	known	nonsense	c.325	p.E109*	0.993	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106	50	0	0	50	12	19.35	-	-	-	A	130712791	C	A	130712791	4	1	3	1	0	0	0	0	0	1	0	0	5422	893	31	3	861	3	FAM102A	9	130712791	Nonsense_Mutation	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09	1	130712791	10500640	16	54	1	2								
TBC1D12	0	genome.wustl.edu	37	chr10	96291053	96291053	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gggaagaatttttatttaggActggattaggaatcctccga	11	5	0	1			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	10	96291053	96291053	A	T	SNP	TBC1D12	ENST00000225235	human	ensembl	69_37n	1	known	missense	c.2095	p.T699S	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239	162	1	0.61	44	27	38.03	-	-	-	T	96291053	A	T	96291053	3	4	3	1	0	0	0	0	1	0	0	0	15693	275	10	5	2141	5	TBC1D12	10	96291053	Missense_Mutation	SNP	A	TCGA-A1-A0SE-01A-11D-A099-09		96291053	39243694	17	55										
B3GNT1	0	genome.wustl.edu	37	chr11	66114207	66114207	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	tgcaccagctcgtttttgttCatgggcatgcggcgggctct	13	11	2	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	11	66114207	66114207	C	A	SNP	B3GNT1	ENST00000311181	human	ensembl	69_37n	-1	known	missense	c.810	p.M270I	0.644	NULL	NULL	-	no_errors	B3GNT1	HGNC	ENSG00000174684	49	0	0	62	10	13.89	-	-	-	A	66114207	C	A	66114207	3	1	3	1	0	0	0	0	1	0	0	0	1260	826	29	2	445	2	B3GNT1	11	66114207	Missense_Mutation	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09		66114207	68892309	18	56										
MGA	0	genome.wustl.edu	37	chr15	42054350	42054350	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	agacagaagaagtggtcctgAagaagctagagtatatttat	11	4	0	6			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	15	42054350	42054350	A	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.7534	p.K2512E	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	68	0	0	32	17	34.69	-	-	-	G	42054350	A	G	42054350	3	3	3	1	0	0	0	0	1	0	0	0	9611	247	9	5	7616	5	MGA	15	42054350	Missense_Mutation	SNP	A	TCGA-A1-A0SE-01A-11D-A099-09		42054350	60477042	19	57										
UNC13C	0	genome.wustl.edu	37	chr15	54306424	54306426	+	In_Frame_Del	DEL	AAG	AAG	-													0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	ctactccagagccaaaaatcAagaagaacaattggcagtca							TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	15	54306424	54306426	AAG	-	DEL	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	in_frame_del	c.1324_1326	p.K443in_frame_del	0.975:1.000:0.998	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	82	0	0	52	9	14.75	-	-	-	-	54306426	AAG	-	54306424	7	5	3	1	0	1	0	1	0	0	0	0	17083	131	5	0	1326	0	UNC13C	15	54306424	In_Frame_Del	DEL	AAG	TCGA-A1-A0SE-01A-11D-A099-09	12252074	54306424	48224968	20	58										
ARRDC4	0	genome.wustl.edu	37	chr15	98513237	98513237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	cagccagttcagtatggataTgagctggttgacactgaccc	11	10	1	3			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	15	98513237	98513237	T	C	SNP	ARRDC4	ENST00000268042	human	ensembl	69_37n	1	known	missense	c.1007	p.M336T	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450	87	0	0	54	7	11.48	-	-	-	C	98513237	T	C	98513237	3	2	3	1	0	0	0	0	1	0	0	0	989	1464	51	5	1029	5	ARRDC4	15	98513237	Missense_Mutation	SNP	T	TCGA-A1-A0SE-01A-11D-A099-09	44206813	98513237	4018155	21	59										
CDH1	0	genome.wustl.edu	37	chr16	68844139	68844139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	catccaacgggaatgcagttGaggatccaatggagattttg	12	7	0	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	16	68844139	68844139	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.727	p.E243K	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	107	0	0	51	21	29.17	-	-	-	A	68844139	G	A	68844139	3	1	3	1	0	0	0	0	1	0	0	0	3124	1291	45	2	749	2	CDH1	16	68844139	Missense_Mutation	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09		68844139	21510614	22	60										
MUC16	0	genome.wustl.edu	37	chr19	9087224	9087224	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gataggaacagttgttaagtCcccagttctgcccaaactcc	8	12	1	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	19	9087224	9087224	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4591	p.D1531N	0.039	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	269	0	0	200	57	22.18	-	-	-	T	9087224	C	T	9087224	3	4	3	1	0	0	0	0	1	0	0	0	10045	855	30	2	39268	2	MUC16	19	9087224	Missense_Mutation	SNP	C	TCGA-A1-A0SE-01A-11D-A099-09		9087224	50041759	23	61										
TBL1X	0	genome.wustl.edu	37	chrX	9659623	9659623	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	gtgtttgctgtgacagataaTcacgcgaagccaatggaaat	11	7	1	2			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	X	9659623	9659623	T	C	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	silent	c.621	p.N207	0.998	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	160	0	0	131	20	13.25	-	-	-	C	9659623	T	C	9659623	2	2	3	1	0	0	0	0	0	0	0	1	15734	1432	50	5		5	TBL1X	23	9659623	Silent	SNP	T	TCGA-A1-A0SE-01A-11D-A099-09		9659623	145610937	24	62										
FHL1	0	genome.wustl.edu	37	chrX	135290662	135290662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	3	0.333847972255447	2.48333333333333	NA	2.48333333333333	0.142857142857143	0.62934362934363	0	aggatcagccctggcatgccGattgctttgtgtgtgttacc	12	10	1	0			TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0539776c-3943-41d0-972c-8dc833a603e5	880b9d9f-40bf-4a8a-bfb6-378842c4fb97	X	135290662	135290662	G	A	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	1	known	missense	c.550	p.D184N	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	104	0	0	60	12	16.67	-	-	-	A	135290662	G	A	135290662	3	1	3	1	0	0	0	0	1	0	0	0	5924	1058	37	1	681	1	FHL1	23	135290662	Missense_Mutation	SNP	G	TCGA-A1-A0SE-01A-11D-A099-09	125631039	135290662	19979898	25	63										
TP73	0	genome.wustl.edu	37	chr1	3599659	3599659	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ctacttcgaccttccccagtCaagccgggggaataatgagg	11	12	1	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	3599659	3599659	C	T	SNP	TP73	ENST00000378295	human	ensembl	69_37n	1	known	missense	c.101	p.S34L	0.589	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900	45	0	0	40	6	13.04	-	-	-	T	3599659	C	T	3599659	3	4	4	1	0	0	0	0	1	0	0	0	16489	838	29	2	107	2	TP73	1	3599659	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		3599659	245650962	1	64										
PHF13	0	genome.wustl.edu	37	chr1	6676836	6676836	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ggaatactcccccagttgcaAgaggcgcaggaccgtggaag	14	11	0	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	6676836	6676836	A	C	SNP	PHF13	ENST00000377648	human	ensembl	69_37n	1	known	missense	c.59	p.K20T	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273	54	0	0	34	12	26.09	-	-	-	C	6676836	A	C	6676836	3	2	4	1	0	0	0	0	1	0	0	0	11898	72	3	5	65	5	PHF13	1	6676836	Missense_Mutation	SNP	A	TCGA-A1-A0SF-01A-11D-A142-09	3077177	6676836	242573785	2	65										
DUSP27	0	genome.wustl.edu	37	chr1	167097747	167097747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	atcggagaagcactgacaggGaggaagaggaagaaatggac	16	5	0	4			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	167097747	167097747	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.3379	p.E1127K	0.989	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	13	0	0	13	4	23.53	-	-	-	A	167097747	G	A	167097747	3	1	4	1	0	0	0	0	1	0	0	0	4859	1175	41	2	3397	2	DUSP27	1	167097747	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	160420911	167097747	82152874	3	66										
KDM5B	0	genome.wustl.edu	37	chr1	202743781	202743781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ccaagatcttcctctccacaTgtggaattttcagagtactt	6	11	3	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	202743781	202743781	T	C	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.365	p.H122R	0.999	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	43	0	0	64	11	14.67	-	-	-	C	202743781	T	C	202743781	3	2	4	1	0	0	0	0	1	0	0	0	8187	1464	51	5	4369	5	KDM5B	1	202743781	Missense_Mutation	SNP	T	TCGA-A1-A0SF-01A-11D-A142-09	35646034	202743781	46506840	4	67										
ARL6IP6	0	genome.wustl.edu	37	chr2	153591548	153591548	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	atatccctaactgctggattCtcctgttgcagcttttcttg	7	11	2	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	2	153591548	153591548	C	T	SNP	ARL6IP6	ENST00000326446	human	ensembl	69_37n	1	known	silent	c.495	p.F165	1.000	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	62	0	0	49	9	15.52	-	-	-	T	153591548	C	T	153591548	2	4	4	1	0	0	0	0	0	0	0	1	949	912	32	2		2	ARL6IP6	2	153591548	Silent	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		153591548	89607825	5	68										
FIGN	0	genome.wustl.edu	37	chr2	164468287	164468287	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	gtgctgttctggccactgggCatgctctggcgtccactgca	13	13	2	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	2	164468287	164468287	C	A	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.55	p.A19S	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	25	0	0	20	5	20	-	-	-	A	164468287	C	A	164468287	3	1	4	1	0	0	0	0	1	0	0	0	5937	710	25	4	2228	4	FIGN	2	164468287	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	10876739	164468287	78731086	6	69										
H2AFZ	0	genome.wustl.edu	37	chr4	100870052	100870052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	caagtgacgaggggtaatacGctttacctttaagtcttttg	10	7	1	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	4	100870052	100870052	G	A	SNP	H2AFZ	ENST00000296417	human	ensembl	69_37n	-1	known	missense	c.241	p.R81C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFZ	HGNC	ENSG00000164032	52	0	0	52	8	13.33	-	-	-	A	100870052	G	A	100870052	3	1	4	1	0	0	0	0	1	0	0	0	6982	1087	38	1	153	1	H2AFZ	4	100870052	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09		100870052	90284224	7	70										
HMGB2	0	genome.wustl.edu	37	chr4	174254704	174254704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	cgcgaaattgacggaagagtCcgggtgtttcttcttgtgct	13	8	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	4	174254704	174254704	C	T	SNP	HMGB2	ENST00000296503	human	ensembl	69_37n	-1	known	missense	c.97	p.D33N	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB2	HGNC	ENSG00000164104	42	0	0	30	6	16.67	-	-	-	T	174254704	C	T	174254704	3	4	4	1	0	0	0	0	1	0	0	0	7277	855	30	2	548	2	HMGB2	4	174254704	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	73384652	174254704	16899572	8	71										
KIF2A	0	genome.wustl.edu	37	chr5	61643897	61643897	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgacctggagagcatcttttCacttaaccctgaccttgttc	7	12	2	3			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	61643897	61643897	C	T	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.182	p.S61L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	54	0	0	54	11	16.92	-	-	-	T	61643897	C	T	61643897	3	4	4	1	0	0	0	0	1	0	0	0	8349	838	29	2	192	2	KIF2A	5	61643897	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		61643897	119271363	9	72										
PROP1	0	genome.wustl.edu	37	chr5	177420032	177420032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	gcttccgttgcttagctctgCggttctggaaccagacctga	11	12	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	177420032	177420032	C	T	SNP	PROP1	ENST00000308304	human	ensembl	69_37n	-1	known	missense	c.359	p.R120H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	PROP1	HGNC	ENSG00000175325	50	0	0	45	22	32.84	-	-	-	T	177420032	C	T	177420032	3	4	4	1	0	0	0	0	1	0	0	0	12638	768	27	1	325	1	PROP1	5	177420032	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	115776135	177420032	3495228	10	73										
CUL7	0	genome.wustl.edu	37	chr6	43018789	43018789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ctcataatcatccagcatccGcactcgcatccccggctgca	6	18	2	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	43018789	43018789	G	A	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.1402	p.R468W	1.000	pfam_CPH_domain	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	46	0	0	42	5	10.64	-	-	-	A	43018789	G	A	43018789	3	1	4	1	0	0	0	0	1	0	0	0	4091	1086	38	1	4038	1	CUL7	6	43018789	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09		43018789	128096278	11	74										
MTO1	0	genome.wustl.edu	37	chr6	74176211	74176211	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	actggcattttcttttgacaGaaagaaatcttgaatacacc	6	8	2	4			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	74176211	74176211	G	A	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	splice_site	c.418-1	e3-1	1.000	-	-	-	no_errors	MTO1	HGNC	ENSG00000135297	48	0	0	48	8	14.29	-	-	-	A	74176211	G	A	74176211	5	1	4	1	0	0	0	0	0	0	1	0	10025	956	33	2	427	2	MTO1	6	74176211	Splice_Site	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	31157422	74176211	96938856	12	75										
KPNA5	0	genome.wustl.edu	37	chr6	117013507	117013507	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgattttttctaataatgctGatcaacagctaacagcaaca	5	8	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	117013507	117013507	G	A	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	missense	c.292	p.D98N	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	64	0	0	51	13	20.31	-	-	-	A	117013507	G	A	117013507	3	1	4	1	0	0	0	0	1	0	0	0	8486	1290	45	2	306	2	KPNA5	6	117013507	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	42837296	117013507	54101560	13	76										
LAMA2	0	genome.wustl.edu	37	chr6	129722392	129722392	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	aagaaggaggctgttgaaagCggcaaacgacaaattgagaa	13	5	0	3			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	129722392	129722392	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	silent	c.5469	p.S1823	0.999	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	31	0	0	28	5	15.15	-	-	-	T	129722392	C	T	129722392	2	4	4	1	0	0	0	0	0	0	0	1	8660	767	27	1		1	LAMA2	6	129722392	Silent	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	12708885	129722392	41392675	14	77										
ST7	0	genome.wustl.edu	37	chr7	116593630	116593630	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	acgggctttctggagcagctCaagtcctgcatagtttggtc	12	10	2	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	116593630	116593630	C	T	SNP	ST7	ENST00000265437	human	ensembl	69_37n	1	known	silent	c.36	p.L12	1.000	NULL	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866	53	0	0	50	19	27.54	-	-	-	T	116593630	C	T	116593630	2	4	4	1	0	0	0	0	0	0	0	1	15320	813	29	2		2	ST7	7	116593630	Silent	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		116593630	42545033	15	78										
PLXNA4	0	genome.wustl.edu	37	chr7	131831430	131831430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgtccgtgagcggaggctgtCggggctgcccgtgtaccgga	18	11	0	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	131831430	131831430	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.4894	p.D1632N	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	39	0	0	47	7	12.96	-	-	-	T	131831430	C	T	131831430	3	4	4	1	0	0	0	0	1	0	0	0	12196	884	31	1	810	1	PLXNA4	7	131831430	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	15237800	131831430	27307233	16	79										
MLL3	0	genome.wustl.edu	37	chr7	151879568	151879568	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgaaccagactgcaccagaaGatgctgagaaccaaattgct	9	10	0	5			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	151879568	151879568	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.5377	p.L1793F	0.058	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	19	0	0	20	7	25.93	-	-	-	A	151879568	G	A	151879568	3	1	4	1	0	0	0	0	1	0	0	0	9693	942	33	2	9454	2	MLL3	7	151879568	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	20048138	151879568	7259095	17	80										
EPPK1	0	genome.wustl.edu	37	chr8	144940615	144940615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	acggggtcgatgacgaagccGgtggccgcctgcgcctccag	16	14	0	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	8	144940615	144940615	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.6807	p.T2269	0.242	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	39	0	0	36	6	14.29	-	-	-	A	144940615	G	A	144940615	2	1	4	1	0	0	0	0	0	0	0	1	5227	1103	39	1		1	EPPK1	8	144940615	Silent	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09		144940615	1423407	18	81										
PTPRD	0	genome.wustl.edu	37	chr9	8471022	8471022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	aattccatttcatctggactCtcccatggcttgataaattt	5	10	3	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	9	8471022	8471022	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	silent	c.3477	p.E1159	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	85	0	0	58	10	14.71	-	-	-	T	8471022	C	T	8471022	2	4	4	1	0	0	0	0	0	0	0	1	12882	912	32	2		2	PTPRD	9	8471022	Silent	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		8471022	132742409	19	82										
INPP5F	0	genome.wustl.edu	37	chr10	121563758	121563758	+	Frame_Shift_Del	DEL	T	T	-													0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ttacctgaagcaagtgttgcTtttcaacaactcacacctca							TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	10	121563758	121563758	T	-	DEL	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	frame_shift_del	c.1190	p.F398fs	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	65	0	0	47	8	14.29	-	-	-	-	121563758	T	-	121563758	7	5	4	1	0	1	0	1	0	0	0	0	7812	1609	56	0	1228	0	INPP5F	10	121563758	Frame_Shift_Del	DEL	T	TCGA-A1-A0SF-01A-11D-A142-09		121563758	13970989	20	83										
MUC5B	0	genome.wustl.edu	37	chr11	1266400	1266400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	gatccctgtcccccagcagtCcccacacggtgcgcacagcc	9	20	0	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	1266400	1266400	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8299	p.P2767T	0.004	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	28	0	0	27	9	25	-	-	-	A	1266400	C	A	1266400	3	1	4	1	0	0	0	0	1	0	0	0	10051	855	30	2	8421	2	MUC5B	11	1266400	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		1266400	133740116	21	84										
PPFIBP2	0	genome.wustl.edu	37	chr11	7672087	7672087	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	acagagtaacctttctccttCagaagttgtacagtggtcca	8	10	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	7672087	7672087	C	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.2138	p.S713L	1.000	superfamily_SAM/pointed	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	70	0	0	52	16	23.53	-	-	-	T	7672087	C	T	7672087	3	4	4	1	0	0	0	0	1	0	0	0	12387	838	29	2	2220	2	PPFIBP2	11	7672087	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	6405687	7672087	127334429	22	85										
TPH1	0	genome.wustl.edu	37	chr11	18044348	18044348	+	Frame_Shift_Del	DEL	A	A	-													0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	aagaagatatactgtacctcAtcttctcctttgcatcttca							TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	18044348	18044348	A	-	DEL	TPH1	ENST00000341556	human	ensembl	69_37n	-1	known	frame_shift_del	c.1157	p.M386fs	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167	37	0	0	18	2	10	-	-	-	-	18044348	A	-	18044348	7	5	4	1	0	1	0	1	0	0	0	0	16497	217	8	0	185	0	TPH1	11	18044348	Frame_Shift_Del	DEL	A	TCGA-A1-A0SF-01A-11D-A142-09	10372261	18044348	116962168	23	86										
EXT2	0	genome.wustl.edu	37	chr11	44129420	44129420	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	gccccattctatcgagtcctCaaatgactggaatgtagaga	9	10	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	44129420	44129420	C	T	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.257	p.S86L	0.998	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	76	0	0	68	10	12.82	-	-	-	T	44129420	C	T	44129420	3	4	4	1	0	0	0	0	1	0	0	0	5361	838	29	2	263	2	EXT2	11	44129420	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	26085072	44129420	90877096	24	87										
ACRBP	0	genome.wustl.edu	37	chr12	6753643	6753643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgtcggctcctgcctgtgctCcactccttgctcctgcttgt	9	16	0	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	6753643	6753643	C	T	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	missense	c.604	p.E202K	0.120	pfam_Proacrosin-bd	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	133	0	0	177	35	16.51	-	-	-	T	6753643	C	T	6753643	3	4	4	1	0	0	0	0	1	0	0	0	170	864	30	2	1051	2	ACRBP	12	6753643	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		6753643	127098252	25	88										
KRT86	0	genome.wustl.edu	37	chr12	52700027	52700027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgggcctggacatcgagatcGccacctacaggcgcctgctg	13	14	0	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	52700027	52700027	G	A	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	missense	c.1210	p.A404T	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	39	0	0	18	10	35.71	-	-	-	A	52700027	G	A	52700027	3	1	4	1	0	0	0	0	1	0	0	0	8553	1087	38	1	1236	1	KRT86	12	52700027	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	45946384	52700027	81151868	26	89										
BEST3	0	genome.wustl.edu	37	chr12	70072563	70072563	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	actgtctctgattctaccttCattccgggctttagttgcaa	7	11	3	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	70072563	70072563	C	A	SNP	BEST3	ENST00000330891	human	ensembl	69_37n	-1	known	nonsense	c.592	p.E198*	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	66	0	0	80	11	12.09	-	-	-	A	70072563	C	A	70072563	4	1	4	1	0	0	0	0	0	1	0	0	1410	835	29	2	1438	2	BEST3	12	70072563	Nonsense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09	17372536	70072563	63779332	27	90										
KITLG	0	genome.wustl.edu	37	chr12	88939633	88939633	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ctgaagataaatgcaagtgaGaatccaagtctaaatgaaaa	8	5	1	4			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	88939633	88939633	G	A	SNP	KITLG	ENST00000228280	human	ensembl	69_37n	-1	known	missense	c.25	p.L9F	1.000	pfam_SCF,pirsf_SCF	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130	34	0	0	25	6	19.35	-	-	-	A	88939633	G	A	88939633	3	1	4	1	0	0	0	0	1	0	0	0	8383	942	33	2	828	2	KITLG	12	88939633	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	18867070	88939633	44912262	28	91										
RIT2	0	genome.wustl.edu	37	chr18	40323522	40323522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tcttccacaggctgtcttttCtcttcagtttcttttccatc	4	13	5	0			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	18	40323522	40323522	C	T	SNP	RIT2	ENST00000326695	human	ensembl	69_37n	-1	known	missense	c.590	p.R197K	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT2	HGNC	ENSG00000152214	63	0	0	52	12	18.75	-	-	-	T	40323522	C	T	40323522	3	4	4	1	0	0	0	0	1	0	0	0	13473	913	32	2	67	2	RIT2	18	40323522	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		40323522	37753726	29	92										
MUC16	0	genome.wustl.edu	37	chr19	9072222	9072222	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tgtctgtaatcttcactaggCcagaggtgagaagtgaagtc	12	7	3	3			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	19	9072222	9072222	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.15224	p.G5075V	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	47	0	0	36	11	23.4	-	-	-	A	9072222	C	A	9072222	3	1	4	1	0	0	0	0	1	0	0	0	10045	739	26	4	28627	4	MUC16	19	9072222	Missense_Mutation	SNP	C	TCGA-A1-A0SF-01A-11D-A142-09		9072222	50056761	30	93										
ZNF91	0	genome.wustl.edu	37	chr19	23543097	23543097	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	tcttatgttcagtaagggttGaggaccagataaatgctttg	11	5	2	2			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	19	23543097	23543097	G	A	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2684	p.S895L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	52	0	0	36	22	37.93	-	-	-	A	23543097	G	A	23543097	3	1	4	1	0	0	0	0	1	0	0	0	18293	1294	45	2	895	2	ZNF91	19	23543097	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09	14470875	23543097	35585886	31	94										
CECR2	0	genome.wustl.edu	37	chr22	18018340	18018340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	ggctttcagttctagacgtgGtaaaggctcacaaggattcc	11	9	3	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	22	18018340	18018340	G	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.1222	p.V408I	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	93	0	0	97	11	10.19	-	-	-	A	18018340	G	A	18018340	3	1	4	1	0	0	0	0	1	0	0	0	3235	1261	44	4	1266	4	CECR2	22	18018340	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09		18018340	33286226	32	95										
DDX53	0	genome.wustl.edu	37	chrX	23018658	23018658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.393939393939394	13	0.000275920535761636	3.40948453608247	NA	3.40948453608247	7.47820104395685e-07	7.3136806209898e-05	9	gcattagggcagcagtcgtgGagtgcgaaaagagaaaatgg	16	5	0	1			TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	X	23018658	23018658	G	A	SNP	DDX53	ENST00000327968	human	ensembl	69_37n	1	known	missense	c.484	p.E162K	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735	47	0	0	38	9	19.15	-	-	-	A	23018658	G	A	23018658	3	1	4	1	0	0	0	0	1	0	0	0	4402	1175	41	2	486	2	DDX53	23	23018658	Missense_Mutation	SNP	G	TCGA-A1-A0SF-01A-11D-A142-09		23018658	132251902	33	96										
PADI2	0	genome.wustl.edu	37	chr1	17419026	17419026	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	catctgggacatgtccttgaGatctgagggacagaaggtga	14	7	2	4			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	17419026	17419026	G	C	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	missense	c.532	p.L178V	1.000	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	69	0	0	20	6	23.08	-	-	-	C	17419026	G	C	17419026	3	2	5	1	0	0	0	0	1	0	0	0	11451	942	33	2	1509	2	PADI2	1	17419026	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09		17419026	231831595	1	97										
CSMD2	0	genome.wustl.edu	37	chr1	34090712	34090712	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ccaggcacagggaggcactcGatctctggcgacccctgcag	13	15	1	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	34090712	34090712	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.5439	p.I1813	0.008	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	35	0	0	17	5	22.73	-	-	-	A	34090712	G	A	34090712	2	1	5	1	0	0	0	0	0	0	0	1	3977	1048	37	1		1	CSMD2	1	34090712	Silent	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	16671686	34090712	215159909	2	98										
C2orf73	0	genome.wustl.edu	37	chr2	54587645	54587645	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	actcaaacaactgtaggagaTgctcttttcactaggcacaa	7	10	3	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	54587645	54587645	T	C	SNP	C2orf73	ENST00000398634	human	ensembl	69_37n	1	known	silent	c.810	p.D270	0.000	NULL	NULL	-	no_errors	C2orf73	HGNC	ENSG00000177994	38	0	0	25	6	19.35	-	-	-	C	54587645	T	C	54587645	2	2	5	1	0	0	0	0	0	0	0	1	2212	1461	51	5		5	C2orf73	2	54587645	Silent	SNP	T	TCGA-A1-A0SG-01A-11D-A142-09		54587645	188611728	3	99										
DYSF	0	genome.wustl.edu	37	chr2	71827844	71827844	+	Frame_Shift_Del	DEL	T	T	-													0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	tggtctagggtgcagacgagTttatgggtcgctgcatctgt							TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	71827844	71827844	T	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	frame_shift_del	c.3808	p.F1270fs	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	29	0	0	8	2	20	-	-	-	-	71827844	T	-	71827844	7	5	5	1	0	1	0	1	0	0	0	0	4894	1725	60	0	4041	0	DYSF	2	71827844	Frame_Shift_Del	DEL	T	TCGA-A1-A0SG-01A-11D-A142-09	17240199	71827844	171371529	4	100										
SCN7A	0	genome.wustl.edu	37	chr2	167263066	167263066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	cctttggtccttttccaagaCgcagcatgtgaatgatccgt	9	11	0	3			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	167263066	167263066	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.4073	p.R1358H	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	26	0	0	11	4	26.67	-	-	-	T	167263066	C	T	167263066	3	4	5	1	0	0	0	0	1	0	0	0	14011	536	19	1	979	1	SCN7A	2	167263066	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09	95435222	167263066	75936307	5	101										
GRM7	0	genome.wustl.edu	37	chr3	7620374	7620374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ctccccctgggctgtgattcCtgtcttcctggcaatgttgg	11	13	1	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	3	7620374	7620374	C	T	SNP	GRM7	ENST00000402647	human	ensembl	69_37n	1	known	missense	c.1781	p.P594L	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	76	0	0	25	16	39.02	-	-	-	T	7620374	C	T	7620374	3	4	5	1	0	0	0	0	1	0	0	0	6853	681	24	4	1811	4	GRM7	3	7620374	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09		7620374	190402056	6	102										
PPID	0	genome.wustl.edu	37	chr4	159640438	159640438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gaatcataaatttcttaataActacaaaaaaggaaaatggc	5	5	2	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	4	159640438	159640438	A	C	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	missense	c.227	p.I76S	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	116	0	0	65	27	29.35	-	-	-	C	159640438	A	C	159640438	3	2	5	1	0	0	0	0	1	0	0	0	12398	57	2	5	917	5	PPID	4	159640438	Missense_Mutation	SNP	A	TCGA-A1-A0SG-01A-11D-A142-09		159640438	31513838	7	103										
MAP3K1	0	genome.wustl.edu	37	chr5	56178135	56178136	+	Frame_Shift_Ins	INS	-	-	A													0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	acagaaactgtcctgaaaacINSaaagactcagataaactttc							TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	56178135	56178136	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3108_3109	p.D1037fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	63	0	0	14	10	41.67	-	-	-	A	56178136	-	A	56178135	7	5	5	1	0	1	1	0	0	0	0	0	9314	477	17	0	3162	0	MAP3K1	5	56178135	Frame_Shift_Ins	INS	-	TCGA-A1-A0SG-01A-11D-A142-09		56178135	124737125	8	104										
HSD17B4	0	genome.wustl.edu	37	chr5	118835164	118835164	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	tctgatttctcctgtttgccCaccttcggagttatcatagg	8	11	3	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	118835164	118835164	C	T	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	silent	c.1125	p.P375	0.993	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	112	0	0	40	18	31.03	-	-	-	T	118835164	C	T	118835164	2	4	5	1	0	0	0	0	0	0	0	1	7437	581	21	4		4	HSD17B4	5	118835164	Silent	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09	62657029	118835164	62080096	9	105										
FAT2	0	genome.wustl.edu	37	chr5	150922760	150922760	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ccaggctgtctttcaccttgAccacaccagtgactgggtta	9	13	2	2			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	150922760	150922760	A	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.7928	p.V2643D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	76	0	0	25	11	30.56	-	-	-	T	150922760	A	T	150922760	3	4	5	1	0	0	0	0	1	0	0	0	5736	275	10	5	5181	5	FAT2	5	150922760	Missense_Mutation	SNP	A	TCGA-A1-A0SG-01A-11D-A142-09	32087596	150922760	29992500	10	106										
ARC	0	genome.wustl.edu	37	chr8	143695260	143695260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ctccaggcggtcggcccagcGctccaggcggtagaacacct	13	16	0	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	8	143695260	143695260	G	A	SNP	ARC	ENST00000356613	human	ensembl	69_37n	-1	known	missense	c.373	p.R125C	0.742	prints_Activity-reg_cytoskelet-assoc	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576	16	0	0	11	4	26.67	-	-	-	A	143695260	G	A	143695260	3	1	5	1	0	0	0	0	1	0	0	0	843	1087	38	1	821	1	ARC	8	143695260	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09		143695260	2668762	11	107										
FRMD4A	0	genome.wustl.edu	37	chr10	13852832	13852832	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	acgtttcatctgtgaatgctAttccaaagtactccttttcc	5	11	2	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	13852832	13852832	A	G	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.188	p.I63T	0.999	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	82	0	0	31	10	24.39	-	-	-	G	13852832	A	G	13852832	3	3	5	1	0	0	0	0	1	0	0	0	6100	449	16	5	3015	5	FRMD4A	10	13852832	Missense_Mutation	SNP	A	TCGA-A1-A0SG-01A-11D-A142-09		13852832	121681915	12	108										
TYSND1	0	genome.wustl.edu	37	chr10	71905831	71905831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gatccgcctcctcgtcctccGacacttcgtcatcccgcgcc	7	21	1	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	71905831	71905831	G	A	SNP	TYSND1	ENST00000287078	human	ensembl	69_37n	-1	known	missense	c.512	p.S171L	0.970	pirsf_Pept_S1A_Tysnd1	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,pirsf_Pept_S1A_Tysnd1	-	no_errors	TYSND1	HGNC	ENSG00000156521	23	0	0	8	4	33.33	-	-	-	A	71905831	G	A	71905831	3	1	5	1	0	0	0	0	1	0	0	0	16914	1059	37	1	1204	1	TYSND1	10	71905831	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	58052999	71905831	63628916	13	109										
SYNPO2L	0	genome.wustl.edu	37	chr10	75406545	75406545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ctggtggctgaaaatcggggCctggctacctggaaaccgca	14	11	0	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	75406545	75406545	C	T	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	silent	c.2865	p.R955	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	51	0	0	19	8	29.63	-	-	-	T	75406545	C	T	75406545	2	4	5	1	0	0	0	0	0	0	0	1	15550	738	26	4		4	SYNPO2L	10	75406545	Silent	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09	3500714	75406545	60128202	14	110										
SLC29A2	0	genome.wustl.edu	37	chr11	66136839	66136839	+	Splice_Site	DEL	C	C	-													0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gagccagggcaggcctctcaCcactggtacaggaaggagtt							TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	11	66136839	66136839	C	-	DEL	SLC29A2	ENST00000357440	human	ensembl	69_37n	-1	known	splice_site_del	c.275+1	e3+1	1.000	-	-	-	no_errors	SLC29A2	HGNC	ENSG00000174669	43	0	0	12	2	14.29	-	-	-	-	66136839	C	-	66136839	8	5	5	1	0	1	0	1	0	0	1	0	14624	521	18	0	1134	0	SLC29A2	11	66136839	Splice_Site	DEL	C	TCGA-A1-A0SG-01A-11D-A142-09		66136839	68869677	15	111										
LMO3	0	genome.wustl.edu	37	chr12	16713405	16713405	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gtaaacattgtccttggcacGcatcaccatctcaaaggcag	8	12	2	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	16713405	16713405	G	C	SNP	LMO3	ENST00000541295	human	ensembl	69_37n	-1	known	missense	c.328	p.R110G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540	124	0	0	44	16	26.67	-	-	-	C	16713405	G	C	16713405	3	2	5	1	0	0	0	0	1	0	0	0	8909	1087	38	3	171	3	LMO3	12	16713405	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09		16713405	117138490	16	112										
NAV3	0	genome.wustl.edu	37	chr12	78569098	78569098	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	attgctagatcttcgcatcaGaagacagcattcctctgaaa	7	10	3	4			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	78569098	78569098	G	A	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.4994	p.R1665K	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	125	0	0	51	29	36.25	-	-	-	A	78569098	G	A	78569098	3	1	5	1	0	0	0	0	1	0	0	0	10257	942	33	2	5092	2	NAV3	12	78569098	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	61855693	78569098	55282797	17	113										
CEP290	0	genome.wustl.edu	37	chr12	88472999	88472999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ggagttctaaaagtgcccgaCtaagtgcctaaaaattaacc	8	9	1	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	88472999	88472999	C	T	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.5240	p.S1747N	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	80	0	0	35	24	40.68	-	-	-	T	88472999	C	T	88472999	3	4	5	1	0	0	0	0	1	0	0	0	3282	565	20	4	2269	4	CEP290	12	88472999	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09	9903901	88472999	45378896	18	114										
MRPL46	0	genome.wustl.edu	37	chr15	89008087	89008087	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	cttcctgttcagggatgttcGgtcattcttttcatcagctt	8	10	5	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	15	89008087	89008087	G	A	SNP	MRPL46	ENST00000312475	human	ensembl	69_37n	-1	known	nonsense	c.436	p.R146*	0.746	NULL	pfam_Ribosomal_L46,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	MRPL46	Clone_based_vega_gene	ENSG00000259494	81	0	0	41	16	28.07	-	-	-	A	89008087	G	A	89008087	4	1	5	1	0	0	0	0	0	1	0	0	9882	1124	39	1	411	1	MRPL46	15	89008087	Nonsense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09		89008087	13523305	19	115										
MMP15	0	genome.wustl.edu	37	chr16	58074022	58074022	+	Frame_Shift_Del	DEL	C	C	-													0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gcctatttccctggccccggCctaggcggggacacccattt							TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	16	58074022	58074022	C	-	DEL	MMP15	ENST00000219271	human	ensembl	69_37n	1	known	frame_shift_del	c.684	p.L229fs	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	33	0	0	6	2	25	-	-	-	-	58074022	C	-	58074022	7	5	5	1	0	1	0	1	0	0	0	0	9725	726	26	0	698	0	MMP15	16	58074022	Frame_Shift_Del	DEL	C	TCGA-A1-A0SG-01A-11D-A142-09		58074022	32280731	20	116										
MIS12	0	genome.wustl.edu	37	chr17	5392578	5392578	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	gagaagtacaagactgaattAtgtactaagcaggcccttct	9	8	1	3			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	5392578	5392578	A	T	SNP	MIS12	ENST00000381165	human	ensembl	69_37n	1	known	missense	c.396	p.L132F	0.000	pfam_Centromere_Mis12	pfam_Centromere_Mis12	-	no_errors	MIS12	HGNC	ENSG00000167842	74	0	0	30	21	41.18	-	-	-	T	5392578	A	T	5392578	3	4	5	1	0	0	0	0	1	0	0	0	9665	446	16	5	398	5	MIS12	17	5392578	Missense_Mutation	SNP	A	TCGA-A1-A0SG-01A-11D-A142-09		5392578	75802632	21	117										
TMEM99	0	genome.wustl.edu	37	chr17	38991201	38991201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	cagaggccattgggcctggaGttccagttccagtgtctgga	14	10	1	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	38991201	38991201	G	A	SNP	TMEM99	ENST00000301665	human	ensembl	69_37n	1	known	missense	c.433	p.V145I	0.003	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920	101	0	0	33	9	21.43	-	-	-	A	38991201	G	A	38991201	3	1	5	1	0	0	0	0	1	0	0	0	16321	1029	36	4	435	4	TMEM99	17	38991201	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	33598623	38991201	42204009	22	118										
ERN1	0	genome.wustl.edu	37	chr17	62130251	62130251	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	cccactgccagcttcttgcaGaggccaaagtcggagatcat	10	13	2	2			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	62130251	62130251	G	A	SNP	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	silent	c.2142	p.L714	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	90	0	0	18	15	45.45	-	-	-	A	62130251	G	A	62130251	2	1	5	1	0	0	0	0	0	0	0	1	5274	929	33	2		2	ERN1	17	62130251	Silent	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	23139050	62130251	19064959	23	119										
ILVBL	0	genome.wustl.edu	37	chr19	15226086	15226086	+	Frame_Shift_Del	DEL	G	G	-													0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	tacagcaatggagccatcgcGgaagtccgtcctcccaatga							TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	19	15226086	15226086	G	-	DEL	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	frame_shift_del	c.1876	p.R626fs	1.000	NULL	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	63	0	0	17	2	10.53	-	-	-	-	15226086	G	-	15226086	7	5	5	1	0	1	0	1	0	0	0	0	7769	1116	39	0	26	0	ILVBL	19	15226086	Frame_Shift_Del	DEL	G	TCGA-A1-A0SG-01A-11D-A142-09		15226086	43902897	24	120										
ZNF217	0	genome.wustl.edu	37	chr20	52192368	52192368	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	agtcagcacatttggagaatCgacctcgctggagctcagga	12	10	2	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	52192368	52192368	C	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.2935	p.D979Y	0.121	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	71	0	0	27	14	34.15	-	-	-	A	52192368	C	A	52192368	3	1	5	1	0	0	0	0	1	0	0	0	17868	884	31	3	219	3	ZNF217	20	52192368	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09		52192368	10833152	25	121										
KRTAP13-2	0	genome.wustl.edu	37	chr21	31744287	31744287	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	agagcaaggaggttctggggCggtagcaggaggtctggcag	20	6	2	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	21	31744287	31744287	C	A	SNP	KRTAP13-2	ENST00000399889	human	ensembl	69_37n	-1	known	missense	c.245	p.R82L	0.321	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-2	HGNC	ENSG00000182816	146	0	0	54	20	27.03	-	-	-	A	31744287	C	A	31744287	3	1	5	1	0	0	0	0	1	0	0	0	8576	768	27	3	286	3	KRTAP13-2	21	31744287	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09		31744287	16385608	26	122										
DSCAM	0	genome.wustl.edu	37	chr21	41719645	41719645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	agcggacagcttgtccttgcGcacaaagcactggtatgcgc	12	12	0	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	21	41719645	41719645	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.1162	p.R388C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	157	0	0	59	22	27.16	-	-	-	A	41719645	G	A	41719645	3	1	5	1	0	0	0	0	1	0	0	0	4803	1087	38	1	4988	1	DSCAM	21	41719645	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	9975358	41719645	6410250	27	123										
CECR2	0	genome.wustl.edu	37	chr22	18028506	18028506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ctggaggctttccccggtatCgccccccacaaggaatgagg	12	14	0	1			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	18028506	18028506	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.3463	p.R1155C	0.994	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	101	0	0	41	16	28.07	-	-	-	T	18028506	C	T	18028506	3	4	5	1	0	0	0	0	1	0	0	0	3235	884	31	1	3527	1	CECR2	22	18028506	Missense_Mutation	SNP	C	TCGA-A1-A0SG-01A-11D-A142-09		18028506	33276060	28	124										
EWSR1	0	genome.wustl.edu	37	chr22	29694792	29694792	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	ccgtggaggagatagaggagGcttccctccaagaggacccc	14	12	0	3			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	29694792	29694792	G	C	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	missense	c.1502	p.G501A	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	94	0	0	16	14	46.67	-	-	-	C	29694792	G	C	29694792	3	2	5	1	0	0	0	0	1	0	0	0	5332	1203	42	4	1658	4	EWSR1	22	29694792	Missense_Mutation	SNP	G	TCGA-A1-A0SG-01A-11D-A142-09	11666286	29694792	21609774	29	125										
MED12	0	genome.wustl.edu	37	chrX	70361800	70361800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.718829364832803	1.37851662404092	2.60386473429952	1.11594202898551	1	1	0	agctttggtccggcaacttcAacaacagctctctagtaagc	8	12	2	0			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	X	70361800	70361800	A	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.6485	p.Q2162R	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	113	0	0	24	18	42.86	-	-	-	G	70361800	A	G	70361800	3	3	5	1	0	0	0	0	1	0	0	0	9499	130	5	5	6650	5	MED12	23	70361800	Missense_Mutation	SNP	A	TCGA-A1-A0SG-01A-11D-A142-09		70361800	84908760	30	126										
ATPIF1	0	genome.wustl.edu	37	chr1	28562879	28562915	+	Frame_Shift_Del	DEL	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-													0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tgtctctctgcagtccgagaAtgtcgaccggggcgcgggct							TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	28562879	28562915	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-	DEL	ATPIF1	ENST00000335514	human	ensembl	69_37n	1	known	frame_shift_del	c.95_131	p.N32fs	0.000:0.000:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.005:0.003:0.998:1.000:1.000:0.997:0.996:0.021:0.252:0.991:0.996:1.000:1.000:0.999:1.000:1.000:0.959:0.997:0.996:0.932:1.000:1.000	pfam_ATPase_inhibitor_IATP_mt	pfam_ATPase_inhibitor_IATP_mt	-	no_errors	ATPIF1	HGNC	ENSG00000130770	62	0	0	21	4	15.38	-	-	-	-	28562915	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-	28562879	7	5	6	1	0	1	0	1	0	0	0	0	1207	101	4	0	101	0	ATPIF1	1	28562879	Frame_Shift_Del	DEL	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	TCGA-A1-A0SH-01A-11D-A099-09		28562879	220687742	1	127										
TTC39A	0	genome.wustl.edu	37	chr1	51754571	51754571	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cttgctccataagcagcaggGccagctccagcagggcgttt	12	13	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	51754571	51754571	G	C	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	missense	c.1658	p.A553G	1.000	smart_TPR_repeat	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	111	1	0.88	115	26	18.44	-	-	-	C	51754571	G	C	51754571	3	2	6	1	0	0	0	0	1	0	0	0	16804	1203	42	4	191	4	TTC39A	1	51754571	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	23191692	51754571	197496050	2	128										
NUAK2	0	genome.wustl.edu	37	chr1	205272579	205272579	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ggggcaatgcctactccactCaggtgagctttgagcagacc	12	12	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	205272579	205272579	C	T	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	silent	c.1886	p.*629	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	41	0	0	81	12	12.77	-	-	-	T	205272579	C	T	205272579	2	4	6	1	0	0	0	0	0	0	0	1	10786	837	29	2		2	NUAK2	1	205272579	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	153518008	205272579	43978042	3	129										
CDK18	0	genome.wustl.edu	37	chr1	205494302	205494302	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gggaaactggaaacatacgtGaaactggacaaactgggaga	13	6	0	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	205494302	205494302	G	C	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.525	p.V175	0.997	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	149	0	0	233	82	26.03	-	-	-	C	205494302	G	C	205494302	2	2	6	1	0	0	0	0	0	0	0	1	3163	1277	45	2		2	CDK18	1	205494302	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	221723	205494302	43756319	4	130										
USH2A	0	genome.wustl.edu	37	chr1	216420207	216420207	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tcacagttgcaaggcagacaGaggaaagaattattttgccg	11	7	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	216420207	216420207	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.2529	p.L843	0.885	smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	173	0	0	194	32	14.16	-	-	-	A	216420207	G	A	216420207	2	1	6	1	0	0	0	0	0	0	0	1	17133	929	33	2		2	USH2A	1	216420207	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	10925905	216420207	32830414	5	131										
RYR2	0	genome.wustl.edu	37	chr1	237868586	237868586	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tagcatttttggaaactcatCtggacaaacataatatttac	5	7	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	237868586	237868586	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.9517	p.L3173V	0.988	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	173	0	0	144	86	37.39	-	-	-	G	237868586	C	G	237868586	3	3	6	1	0	0	0	0	1	0	0	0	13855	912	32	2	9789	2	RYR2	1	237868586	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	21448379	237868586	11382035	6	132										
AHCTF1	0	genome.wustl.edu	37	chr1	247040513	247040513	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	atcttccatcaagcccatttCctgacagacttcatacatgt	4	13	3	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	1	247040513	247040513	C	A	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	nonsense	c.2779	p.E927*	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	149	0	0	153	37	19.47	-	-	-	A	247040513	C	A	247040513	4	1	6	1	0	0	0	0	0	1	0	0	408	864	30	2	4108	2	AHCTF1	1	247040513	Nonsense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	9171927	247040513	2210108	7	133										
FAM150B	0	genome.wustl.edu	37	chr2	286186	286186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gaagtgtttgctgcactttgGactaaaataaagagggcctg	12	6	0	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	2	286186	286186	G	C	SNP	FAM150B	ENST00000403610	human	ensembl	69_37n	-1	novel	missense	c.325	p.P109A	0.994	NULL	NULL	-	no_errors	FAM150B	HGNC	ENSG00000189292	217	0	0	171	41	19.34	-	-	-	C	286186	G	C	286186	3	2	6	1	0	0	0	0	1	0	0	0	5497	1174	41	2	145	2	FAM150B	2	286186	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		286186	242913187	8	134										
SPTBN1	0	genome.wustl.edu	37	chr2	54874337	54874337	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	aagctgtggaggactatgcaGagaccgtgcatcagctctcc	12	11	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	2	54874337	54874337	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.4936	p.E1646K	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	48	0	0	35	11	23.91	-	-	-	A	54874337	G	A	54874337	3	1	6	1	0	0	0	0	1	0	0	0	15210	943	33	2	5139	2	SPTBN1	2	54874337	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	54588151	54874337	188325036	9	135										
MARCH7	0	genome.wustl.edu	37	chr2	160585678	160585678	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cttcatttagattggattctGaatatcaggtaacattttta	6	5	3	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	2	160585678	160585678	G	C	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	missense	c.145	p.E49Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	79	0	0	54	26	32.1	-	-	-	C	160585678	G	C	160585678	3	2	6	1	0	0	0	0	1	0	0	0	9377	1291	45	2	147	2	MARCH7	2	160585678	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	105711341	160585678	82613695	10	136										
SLC19A3	0	genome.wustl.edu	37	chr2	228563717	228563717	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ttcagcttccctgaagtgctGagtatttctgatgtgggttt	11	7	2	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	2	228563717	228563717	G	C	SNP	SLC19A3	ENST00000258403	human	ensembl	69_37n	-1	known	silent	c.714	p.L238	0.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917	170	0	0	140	40	22.22	-	-	-	C	228563717	G	C	228563717	2	2	6	1	0	0	0	0	0	0	0	1	14519	1277	45	2		2	SLC19A3	2	228563717	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	67978039	228563717	14635656	11	137										
CNTN4	0	genome.wustl.edu	37	chr3	3078931	3078931	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tgaacccttgggttgaatatGaattccgcacagttgcagcc	10	10	0	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	3	3078931	3078931	G	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.2011	p.E671Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	80	0	0	83	25	23.15	-	-	-	C	3078931	G	C	3078931	3	2	6	1	0	0	0	0	1	0	0	0	3673	1291	45	2	2069	2	CNTN4	3	3078931	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		3078931	194943499	12	138										
COL7A1	0	genome.wustl.edu	37	chr3	48612826	48612826	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ccagccctgcctgggagcccGggaataccaggctttccagg	13	15	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	3	48612826	48612826	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.6126	p.P2042	0.996	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	41	0	0	39	7	15.22	-	-	-	A	48612826	G	A	48612826	2	1	6	1	0	0	0	0	0	0	0	1	3734	1103	39	1		1	COL7A1	3	48612826	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	45533895	48612826	149409604	13	139										
GOLGB1	0	genome.wustl.edu	37	chr3	121415260	121415260	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tgctgcaggctttcggcatgGacttcagcttcatgggatac	12	10	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	3	121415260	121415260	G	T	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	silent	c.4095	p.V1365	0.064	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	86	0	0	61	15	19.48	-	-	-	T	121415260	G	T	121415260	2	4	6	1	0	0	0	0	0	0	0	1	6614	1161	41	2		2	GOLGB1	3	121415260	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	72802434	121415260	76607170	14	140										
LPP	0	genome.wustl.edu	37	chr3	188327441	188327441	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	atgcagcagggccaggctatGggggcagaaatgactctgac	15	9	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	3	188327441	188327441	G	C	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.922	p.G308R	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	49	0	0	78	10	11.36	-	-	-	C	188327441	G	C	188327441	3	2	6	1	0	0	0	0	1	0	0	0	8989	1348	47	4	936	4	LPP	3	188327441	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	66912181	188327441	9694989	15	141										
FIP1L1	0	genome.wustl.edu	37	chr4	54243868	54243868	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gccgccgctgccgtcgccttCctgggattggagtctcgagc	14	15	1	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	4	54243868	54243868	C	T	SNP	FIP1L1	ENST00000511376	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FIP1L1	HGNC	ENSG00000145216	47	0	0	51	9	15	-	-	-	T	54243868	C	T	54243868	1	4	6	0	1	0	0	0	0	0	0	0	5942	870	30	2		2	FIP1L1	4	54243868	RNA	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		54243868	136910408	16	142										
PHF17	0	genome.wustl.edu	37	chr4	129792615	129792615	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	agaggacttgaagtggcattCtgcattcttcagaaaacaaa	9	7	3	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	4	129792615	129792615	C	G	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	missense	c.1727	p.S576C	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	195	0	0	171	46	21.2	-	-	-	G	129792615	C	G	129792615	3	3	6	1	0	0	0	0	1	0	0	0	11902	913	32	2	1792	2	PHF17	4	129792615	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	75548747	129792615	61361661	17	143										
FBXO4	0	genome.wustl.edu	37	chr5	41934239	41934239	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	acaattttttttctagaaagGaaagagatagagcaagggaa	10	3	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	5	41934239	41934239	G	T	SNP	FBXO4	ENST00000281623	human	ensembl	69_37n	1	known	nonsense	c.727	p.E243*	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO4	HGNC	ENSG00000151876	143	0	0	151	43	22.16	-	-	-	T	41934239	G	T	41934239	4	4	6	1	0	0	0	0	0	1	0	0	5794	1175	41	2	745	2	FBXO4	5	41934239	Nonsense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		41934239	138981021	18	144										
BDP1	0	genome.wustl.edu	37	chr5	70858273	70858273	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	aaagccaggaaaaaaatcgaGagtcctctgatctgcttcca	8	10	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	5	70858273	70858273	G	C	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.7669	p.E2557Q	0.081	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	128	1	0.76	136	23	14.37	-	-	-	C	70858273	G	C	70858273	3	2	6	1	0	0	0	0	1	0	0	0	1399	943	33	2	7819	2	BDP1	5	70858273	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	28924034	70858273	110056987	19	145										
GDF9	0	genome.wustl.edu	37	chr5	132197631	132197631	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ttgtctgaagtattcactcaGattgaaggaagctgggccca	11	8	3	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	5	132197631	132197631	G	C	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.1015	p.L339V	0.967	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	54	0	0	49	9	15.52	-	-	-	C	132197631	G	C	132197631	3	2	6	1	0	0	0	0	1	0	0	0	6371	933	33	2	353	2	GDF9	5	132197631	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	61339358	132197631	48717629	20	146										
TIFAB	0	genome.wustl.edu	37	chr5	134785234	134785234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctgtaaatcaggggtgaaggGctgacatggaaatagcagac	14	6	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	5	134785234	134785234	G	T	SNP	TIFAB	ENST00000537858	human	ensembl	69_37n	-1	known	missense	c.396	p.S132R	0.984	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain	-	no_errors	TIFAB	HGNC	ENSG00000255833	42	0	0	43	11	20.37	-	-	-	T	134785234	G	T	134785234	3	4	6	1	0	0	0	0	1	0	0	0	15990	1194	42	4	93	4	TIFAB	5	134785234	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	2587603	134785234	46130026	21	147										
CAP2	0	genome.wustl.edu	37	chr6	17551770	17551770	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	acctcagtgaagatgcattaGactgtgagatcgtgagcgcc	12	9	1	5			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	17551770	17551770	G	C	SNP	CAP2	ENST00000229922	human	ensembl	69_37n	1	known	missense	c.1285	p.D429H	1.000	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186	120	0	0	138	29	17.37	-	-	-	C	17551770	G	C	17551770	3	2	6	1	0	0	0	0	1	0	0	0	2645	942	33	2	1327	2	CAP2	6	17551770	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		17551770	153563297	22	148										
SLC17A4	0	genome.wustl.edu	37	chr6	25776822	25776822	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gacctagtctctggtcctcaGagtgggatcctgtctgcctt	11	12	3	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	25776822	25776822	G	C	SNP	SLC17A4	ENST00000377905	human	ensembl	69_37n	1	known	splice_site	c.988-1	e8-1	1.000	-	-	-	no_errors	SLC17A4	HGNC	ENSG00000146039	174	0	0	160	40	20	-	-	-	C	25776822	G	C	25776822	5	2	6	1	0	0	0	0	0	0	1	0	14508	956	33	2	1017	2	SLC17A4	6	25776822	Splice_Site	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	8225052	25776822	145338245	23	149										
MUC21	0	genome.wustl.edu	37	chr6	30954351	30954351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	acaccctccagtggggccagCacagccaccaactctgactc	8	18	1	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	30954351	30954351	C	A	SNP	MUC21	ENST00000376296	human	ensembl	69_37n	1	known	missense	c.399	p.S133R	0.628	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	141	0	0	101	30	22.9	-	-	-	A	30954351	C	A	30954351	3	1	6	1	0	0	0	0	1	0	0	0	10049	709	25	4	405	4	MUC21	6	30954351	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	5177529	30954351	140160716	24	150										
DNAH8	0	genome.wustl.edu	37	chr6	38830152	38830152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	acagaaaccacaaaagacatGggaaggtgtttgggaaaata	11	5	0	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	38830152	38830152	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.5577	p.M1859I	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	157	0	0	140	30	17.54	-	-	-	T	38830152	G	T	38830152	3	4	6	1	0	0	0	0	1	0	0	0	4642	1348	47	4	5735	4	DNAH8	6	38830152	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	7875801	38830152	132284915	25	151										
FAM83B	0	genome.wustl.edu	37	chr6	54791317	54791317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gactgagaaacaaggttgttCagttcagcgtctcagggtaa	12	7	3	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	54791317	54791317	C	T	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.593	p.S198L	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	68	0	0	67	20	22.99	-	-	-	T	54791317	C	T	54791317	3	4	6	1	0	0	0	0	1	0	0	0	5679	838	29	2	599	2	FAM83B	6	54791317	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	15961165	54791317	116323750	26	152										
MICAL1	0	genome.wustl.edu	37	chr6	109770913	109770913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ggggtagcgggtggctgggtCcagcccatactgggccacat	17	11	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	6	109770913	109770913	C	G	SNP	MICAL1	ENST00000368952	human	ensembl	69_37n	-1	known	missense	c.1438	p.D480H	1.000	superfamily_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596	72	0	0	69	21	23.33	-	-	-	G	109770913	C	G	109770913	3	3	6	1	0	0	0	0	1	0	0	0	9640	855	30	2	1886	2	MICAL1	6	109770913	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	54979596	109770913	61344154	27	153										
ASL	0	genome.wustl.edu	37	chr7	65546799	65546799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctcctggccagagtgggaagCtttggggtggccggtttgtg	18	8	0	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	7	65546799	65546799	C	T	SNP	ASL	ENST00000304874	human	ensembl	69_37n	1	known	missense	c.22	p.L8F	1.000	tigrfam_Argininosuccinate_lyase	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522	20	0	0	31	9	22.5	-	-	-	T	65546799	C	T	65546799	3	4	6	1	0	0	0	0	1	0	0	0	1048	797	28	4	28	4	ASL	7	65546799	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		65546799	93591864	28	154										
ANKRD7	0	genome.wustl.edu	37	chr7	117865025	117865025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctgaaggaataccttcagatCaagaaatatgatgtaaatat	7	5	2	4			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	7	117865025	117865025	C	G	SNP	ANKRD7	ENST00000357099	human	ensembl	69_37n	1	known	missense	c.141	p.I47M	0.009	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013	42	0	0	51	18	26.09	-	-	-	G	117865025	C	G	117865025	3	3	6	1	0	0	0	0	1	0	0	0	685	816	29	2	143	2	ANKRD7	7	117865025	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	52318226	117865025	41273638	29	155										
NOS3	0	genome.wustl.edu	37	chr7	150706129	150706129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	accggctgagcgcccaggccGagggcctgcagttgctgcca	15	15	0	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	7	150706129	150706129	G	C	SNP	NOS3	ENST00000297494	human	ensembl	69_37n	1	known	missense	c.2224	p.E742Q	0.887	superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	22	0	0	20	6	22.22	-	-	-	C	150706129	G	C	150706129	3	2	6	1	0	0	0	0	1	0	0	0	10616	1059	37	3	2572	3	NOS3	7	150706129	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	32841104	150706129	8432534	30	156										
CSMD1	0	genome.wustl.edu	37	chr8	2967831	2967831	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ggagtagatggtgccgttctGagaagttacgttgtacccac	13	8	1	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	2967831	2967831	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	nonsense	c.6460	p.Q2154*	0.484	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	127	0	0	118	36	23.38	-	-	-	A	2967831	G	A	2967831	4	1	6	1	0	0	0	0	0	1	0	0	3976	1299	45	2	4349	2	CSMD1	8	2967831	Nonsense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		2967831	143396191	31	157										
CDCA2	0	genome.wustl.edu	37	chr8	25364913	25364913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtcttgtatggatttcacttCcacttccttccacttcccaa	4	14	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	25364913	25364913	C	T	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.2731	p.P911S	0.286	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	88	0	0	65	17	20.73	-	-	-	T	25364913	C	T	25364913	3	4	6	1	0	0	0	0	1	0	0	0	3115	855	30	2	2785	2	CDCA2	8	25364913	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	22397082	25364913	120999109	32	158										
KCNU1	0	genome.wustl.edu	37	chr8	36663872	36663872	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	catcccaccaacctttatttCttattatttgaagagcaatt	3	10	1	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	36663872	36663872	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.554	p.S185F	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	178	0	0	186	37	16.59	-	-	-	T	36663872	C	T	36663872	3	4	6	1	0	0	0	0	1	0	0	0	8147	913	32	2	572	2	KCNU1	8	36663872	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	11298959	36663872	109700150	33	159										
CYP7A1	0	genome.wustl.edu	37	chr8	59405044	59405044	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tccttagctgtccggatgttGagggaggcactggaaagcct	14	9	0	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	59405044	59405044	G	C	SNP	CYP7A1	ENST00000301645	human	ensembl	69_37n	-1	known	silent	c.1083	p.L361	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910	100	1	0.96	100	24	19.35	-	-	-	C	59405044	G	C	59405044	2	2	6	1	0	0	0	0	0	0	0	1	4227	1277	45	2		2	CYP7A1	8	59405044	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	22741172	59405044	86958978	34	160										
ZFHX4	0	genome.wustl.edu	37	chr8	77616522	77616522	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ccttgctgggtttcagcgttGagaatgcagctgccactcag	12	11	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	77616522	77616522	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.199	p.E67K	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	108	0	0	100	20	16.67	-	-	-	A	77616522	G	A	77616522	3	1	6	1	0	0	0	0	1	0	0	0	17731	1291	45	2	201	2	ZFHX4	8	77616522	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	18211478	77616522	68747500	35	161										
COL14A1	0	genome.wustl.edu	37	chr8	121209170	121209170	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cagcattcgatgtgggctcaGagaagacacgaattggtata	12	7	1	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	8	121209170	121209170	G	C	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.577	p.E193Q	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	127	0	0	127	40	23.95	-	-	-	C	121209170	G	C	121209170	3	2	6	1	0	0	0	0	1	0	0	0	3701	943	33	2	595	2	COL14A1	8	121209170	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	43592648	121209170	25154852	36	162										
TEK	0	genome.wustl.edu	37	chr9	27169623	27169623	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gccttcaccaggctgatagtCcggagtaagtgatggagagg	15	8	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	9	27169623	27169623	C	T	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.624	p.V208	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	63	0	0	62	23	27.06	-	-	-	T	27169623	C	T	27169623	2	4	6	1	0	0	0	0	0	0	0	1	15846	842	30	2		2	TEK	9	27169623	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		27169623	114043808	37	163										
LRRC8A	0	genome.wustl.edu	37	chr9	131671269	131671269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cctggagcgcatcccccactCcatcttcagcctccacaacc	5	21	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	9	131671269	131671269	C	G	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	missense	c.1826	p.S609C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	45	0	0	60	17	22.08	-	-	-	G	131671269	C	G	131671269	3	3	6	1	0	0	0	0	1	0	0	0	9087	855	30	2	1828	2	LRRC8A	9	131671269	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	104501646	131671269	9542162	38	164										
ITIH5	0	genome.wustl.edu	37	chr10	7605129	7605129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtaatccttgtactccccgtCaatcagtttggcggcattgt	9	11	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	7605129	7605129	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	69_37n	-1	known	missense	c.2746	p.D916N	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	92	0	0	102	32	23.88	-	-	-	T	7605129	C	T	7605129	3	4	6	1	0	0	0	0	1	0	0	0	7961	826	29	2	128	2	ITIH5	10	7605129	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		7605129	127929618	39	165										
FAM171A1	0	genome.wustl.edu	37	chr10	15255676	15255676	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gagatggcctgggaagacagGggctggggctggatctgtga	20	6	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	15255676	15255676	G	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	silent	c.1911	p.P637	0.005	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	78	0	0	81	23	22.12	-	-	-	A	15255676	G	A	15255676	2	1	6	1	0	0	0	0	0	0	0	1	5530	1219	43	4		4	FAM171A1	10	15255676	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	7650547	15255676	120279071	40	166										
CUBN	0	genome.wustl.edu	37	chr10	16979594	16979594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tttattaccaaacacacctgGagcaatggtaggtaaaacac	7	9	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	16979594	16979594	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.5923	p.P1975S	0.300	NULL	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	87	0	0	69	21	23.33	-	-	-	A	16979594	G	A	16979594	3	1	6	1	0	0	0	0	1	0	0	0	4082	1174	41	2	5064	2	CUBN	10	16979594	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	1723918	16979594	118555153	41	167										
DRGX	0	genome.wustl.edu	37	chr10	50599285	50599285	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tcatcaaaatcccccgaagaGtgattgccaaaggttgcagt	9	10	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	50599285	50599285	G	C	SNP	DRGX	ENST00000434016	human	ensembl	69_37n	-1	known	missense	c.72	p.H24Q	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DRGX	HGNC	ENSG00000165606	56	0	0	53	21	28.38	-	-	-	C	50599285	G	C	50599285	3	2	6	1	0	0	0	0	1	0	0	0	4798	1020	36	4	753	4	DRGX	10	50599285	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	33619691	50599285	84935462	42	168										
ANK3	0	genome.wustl.edu	37	chr10	61965629	61965629	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gattcttcttgcaggcaataTgaagaggggtaaagccattc	11	7	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	61965629	61965629	T	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.1214	p.H405R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	63	0	0	97	20	17.09	-	-	-	C	61965629	T	C	61965629	3	2	6	1	0	0	0	0	1	0	0	0	622	1464	51	5	12384	5	ANK3	10	61965629	Missense_Mutation	SNP	T	TCGA-A1-A0SH-01A-11D-A099-09	11366344	61965629	73569118	43	169										
CHCHD1	0	genome.wustl.edu	37	chr10	75541933	75541933	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tcattctagctaaccgcgtcGgggagcggcgccgggagaag	16	11	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	75541933	75541933	G	T	SNP	CHCHD1	ENST00000372833	human	ensembl	69_37n	1	known	missense	c.100	p.G34W	0.970	NULL	pfam_CHCH,superfamily_MTCP1	-	no_errors	CHCHD1	HGNC	ENSG00000172586	25	0	0	26	5	16.13	-	-	-	T	75541933	G	T	75541933	3	4	6	1	0	0	0	0	1	0	0	0	3343	1116	39	3	102	3	CHCHD1	10	75541933	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	13576304	75541933	59992814	44	170										
PLCE1	0	genome.wustl.edu	37	chr10	96022290	96022323	+	Frame_Shift_Del	DEL	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-													0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctcggatttggggttgttcaTtaagagtaaacagcagctat							TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	10	96022290	96022323	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	DEL	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	frame_shift_del	c.3854_3887	p.I1285fs	1.000:1.000:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.621:0.998:0.999:0.292:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	136	0	0	137	16	10.32	-	-	-	-	96022323	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	96022290	7	5	6	1	0	1	0	1	0	0	0	0	12108	1493	52	0	4190	0	PLCE1	10	96022290	Frame_Shift_Del	DEL	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	TCGA-A1-A0SH-01A-11D-A099-09	20480357	96022290	39512457	45	171										
SLC43A1	0	genome.wustl.edu	37	chr11	57263602	57263602	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	aggccagaccaggtgaacatGatgaccacgaaggccacacc	11	13	0	4			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	11	57263602	57263602	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	69_37n	-1	known	silent	c.594	p.I198	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150	80	0	0	63	13	17.11	-	-	-	A	57263602	G	A	57263602	2	1	6	1	0	0	0	0	0	0	0	1	14721	1280	45	2		2	SLC43A1	11	57263602	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		57263602	77742914	46	172										
FAM111A	0	genome.wustl.edu	37	chr11	58920660	58920660	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtgttcagtctaaaaaagcaGaaagtccagagtatgtccat	9	7	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	11	58920660	58920660	G	A	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	missense	c.1519	p.E507K	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	80	0	0	61	18	22.78	-	-	-	A	58920660	G	A	58920660	3	1	6	1	0	0	0	0	1	0	0	0	5439	943	33	2	1525	2	FAM111A	11	58920660	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	1657058	58920660	76085856	47	173										
UNC93B1	0	genome.wustl.edu	37	chr11	67763132	67763132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ccacaccccaaagggcagctGccacatagaggatccagctg	10	15	0	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	11	67763132	67763132	G	A	SNP	UNC93B1	ENST00000227471	human	ensembl	69_37n	-1	known	missense	c.1310	p.A437V	0.164	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	17	0	0	12	7	36.84	-	-	-	A	67763132	G	A	67763132	3	1	6	1	0	0	0	0	1	0	0	0	17094	1319	46	4	492	4	UNC93B1	11	67763132	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	8842472	67763132	67243384	48	174										
THRSP	0	genome.wustl.edu	37	chr11	77774954	77774954	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtgctaaccaagcgttacccCaagaactgcctgctgaccgt	9	14	0	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	11	77774954	77774954	C	G	SNP	THRSP	ENST00000281030	human	ensembl	69_37n	1	known	silent	c.27	p.P9	1.000	pfam_Spot_14	pfam_Spot_14	-	no_errors	THRSP	HGNC	ENSG00000151365	69	0	0	65	19	22.62	-	-	-	G	77774954	C	G	77774954	2	3	6	1	0	0	0	0	0	0	0	1	15971	581	21	4		4	THRSP	11	77774954	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	10011822	77774954	57231562	49	175										
EXPH5	0	genome.wustl.edu	37	chr11	108383322	108383322	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gccttatttttccttttcctCtttcattcctaaaaggagag	5	10	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	11	108383322	108383322	C	T	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.2912	p.R971K	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	213	0	0	108	40	27.03	-	-	-	T	108383322	C	T	108383322	3	4	6	1	0	0	0	0	1	0	0	0	5359	913	32	2	3061	2	EXPH5	11	108383322	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	30608368	108383322	26623194	50	176										
PZP	0	genome.wustl.edu	37	chr12	9317862	9317862	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctcggagagaggcagtggaaGagataccaagtccagcatct	13	9	1	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	12	9317862	9317862	G	T	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.2360	p.S787Y	0.999	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	118	1	0.82	121	23	15.97	-	-	-	T	9317862	G	T	9317862	3	4	6	1	0	0	0	0	1	0	0	0	12952	942	33	2	2160	2	PZP	12	9317862	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		9317862	124534033	51	177										
BLOC1S1	0	genome.wustl.edu	37	chr12	56113352	56113352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gcaccattgccactgcactgGaatatgtctacaaagggcag	10	11	1	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	12	56113352	56113352	G	C	SNP	BLOC1S1	ENST00000548925	human	ensembl	69_37n	1	known	missense	c.421	p.E141Q	1.000	pfam_GCN5L1	pfam_GCN5L1	-	no_errors	BLOC1S1	HGNC	ENSG00000135441	49	0	0	51	12	19.05	-	-	-	C	56113352	G	C	56113352	3	2	6	1	0	0	0	0	1	0	0	0	1453	1175	41	2	351	2	BLOC1S1	12	56113352	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	46795490	56113352	77738543	52	178										
HCFC2	0	genome.wustl.edu	37	chr12	104460047	104460047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cagaatattagtatttggggGaatggttgaatatggaagat	13	1	0	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	12	104460047	104460047	G	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.266	p.G89E	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	161	0	0	142	29	16.96	-	-	-	A	104460047	G	A	104460047	3	1	6	1	0	0	0	0	1	0	0	0	7044	1174	41	2	272	2	HCFC2	12	104460047	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	48346695	104460047	29391848	53	179										
MED13L	0	genome.wustl.edu	37	chr12	116408458	116408458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctggagccacctggatggttGatgatgttgggaacaccaag	14	8	0	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	12	116408458	116408458	G	A	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.6008	p.S2003L	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	140	0	0	125	25	16.56	-	-	-	A	116408458	G	A	116408458	3	1	6	1	0	0	0	0	1	0	0	0	9502	1294	45	2	644	2	MED13L	12	116408458	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	11948411	116408458	17443437	54	180										
IPO4	0	genome.wustl.edu	37	chr14	24652347	24652347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	actgcctgcatgtaggatggCacgactcgggccagggcagc	15	12	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	14	24652347	24652347	C	G	SNP	IPO4	ENST00000561462	human	ensembl	69_37n	-1	putative	missense	c.646	p.A216P	0.899	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IPO4	HGNC	ENSG00000196497	34	0	0	29	11	27.5	-	-	-	G	24652347	C	G	24652347	3	3	6	1	0	0	0	0	1	0	0	0	7849	697	25	4	1021	4	IPO4	14	24652347	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		24652347	82697193	55	181										
C14orf37	0	genome.wustl.edu	37	chr14	58605932	58605932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	taggtcatcggtgttcatctTatcggactgccctttttccg	9	11	3	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	14	58605932	58605932	T	C	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.145	p.K49E	0.079	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	154	0	0	124	22	15.07	-	-	-	C	58605932	T	C	58605932	3	2	6	1	0	0	0	0	1	0	0	0	1783	1763	61	5	2207	5	C14orf37	14	58605932	Missense_Mutation	SNP	T	TCGA-A1-A0SH-01A-11D-A099-09	33953585	58605932	48743608	56	182										
DAPK2	0	genome.wustl.edu	37	chr15	64204356	64204356	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tgaagttctccagattgaccAcagactccctgcgcaccatg	8	14	1	4			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	15	64204356	64204356	A	T	SNP	DAPK2	ENST00000261891	human	ensembl	69_37n	-1	known	missense	c.899	p.V300E	0.831	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664	28	0	0	20	7	25.93	-	-	-	T	64204356	A	T	64204356	3	4	6	1	0	0	0	0	1	0	0	0	4268	159	6	5	225	5	DAPK2	15	64204356	Missense_Mutation	SNP	A	TCGA-A1-A0SH-01A-11D-A099-09		64204356	38327036	57	183										
SCAPER	0	genome.wustl.edu	37	chr15	77057342	77057342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gcttcaatgttttctcttcgCgtaacttttcccttagctgc	6	12	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	15	77057342	77057342	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.1685	p.R562H	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	216	0	0	203	41	16.8	-	-	-	T	77057342	C	T	77057342	3	4	6	1	0	0	0	0	1	0	0	0	13965	768	27	1	2593	1	SCAPER	15	77057342	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	12852986	77057342	25474050	58	184										
ALPK3	0	genome.wustl.edu	37	chr15	85400295	85400295	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctggttgcctgcccagatctGaggaggcagtagtaacagcc	13	11	1	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	15	85400295	85400295	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.2932	p.E978K	0.003	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	72	0	0	67	30	30.93	-	-	-	A	85400295	G	A	85400295	3	1	6	1	0	0	0	0	1	0	0	0	546	1291	45	2	2954	2	ALPK3	15	85400295	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	8342953	85400295	17131097	59	185										
KLHL25	0	genome.wustl.edu	37	chr15	86311940	86311940	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	catgggcgccgccttggaccAttcctcatgtacggtgtcgt	12	13	1	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	15	86311940	86311940	A	T	SNP	KLHL25	ENST00000337975	human	ensembl	69_37n	-1	known	missense	c.1102	p.W368R	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655	37	0	0	32	10	23.81	-	-	-	T	86311940	A	T	86311940	3	4	6	1	0	0	0	0	1	0	0	0	8433	217	8	5	671	5	KLHL25	15	86311940	Missense_Mutation	SNP	A	TCGA-A1-A0SH-01A-11D-A099-09	911645	86311940	16219452	60	186										
RHCG	0	genome.wustl.edu	37	chr15	90016021	90016021	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtggggacaccatgggtactGagggtactgagggtcctgag	18	7	0	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	15	90016021	90016021	G	T	SNP	RHCG	ENST00000268122	human	ensembl	69_37n	-1	known	nonsense	c.1385	p.S462*	0.000	NULL	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519	169	0	0	176	41	18.89	-	-	-	T	90016021	G	T	90016021	4	4	6	1	0	0	0	0	0	1	0	0	13410	1294	45	2	58	2	RHCG	15	90016021	Nonsense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	3704081	90016021	12515371	61	187										
EDC4	0	genome.wustl.edu	37	chr16	67914876	67914876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gacattactcgtgagacctgCagcaccctggcagaaaggtg	12	11	0	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	16	67914876	67914876	C	T	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	silent	c.2514	p.C838	0.999	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	44	0	0	27	4	12.9	-	-	-	T	67914876	C	T	67914876	2	4	6	1	0	0	0	0	0	0	0	1	4943	718	25	4		4	EDC4	16	67914876	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		67914876	22439877	62	188										
HYDIN	0	genome.wustl.edu	37	chr16	70989287	70989287	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tgggctcttaccagcctcctCtccttccttcacggactgct	7	17	3	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	16	70989287	70989287	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	nonsense	c.6304	p.E2102*	0.920	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	55	0	0	48	7	12.73	-	-	-	A	70989287	C	A	70989287	4	1	6	1	0	0	0	0	0	1	0	0	7521	922	32	2	9246	2	HYDIN	16	70989287	Nonsense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	3074411	70989287	19365466	63	189										
DHX33	0	genome.wustl.edu	37	chr17	5356907	5356907	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ggatttcacttacctggagaTggcttcgacatgaagtcaaa	10	8	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	5356907	5356907	T	C	SNP	DHX33	ENST00000572490	human	ensembl	69_37n	-1	novel	missense	c.1117	p.I373V	0.020	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHX33	HGNC	ENSG00000005100	111	0	0	79	28	26.17	-	-	-	C	5356907	T	C	5356907	3	2	6	1	0	0	0	0	1	0	0	0	4542	1451	51	5	754	5	DHX33	17	5356907	Missense_Mutation	SNP	T	TCGA-A1-A0SH-01A-11D-A099-09		5356907	75838303	64	190										
DHRS13	0	genome.wustl.edu	37	chr17	27225602	27225602	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gcttagagaagatggggcctCtgagtcctcagactgggggt	16	8	2	4			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	27225602	27225602	C	G	SNP	DHRS13	ENST00000378895	human	ensembl	69_37n	-1	known	missense	c.991	p.E331Q	0.002	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	54	0	0	54	9	14.29	-	-	-	G	27225602	C	G	27225602	3	3	6	1	0	0	0	0	1	0	0	0	4525	922	32	2	146	2	DHRS13	17	27225602	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	21868695	27225602	53969608	65	191										
GPR179	0	genome.wustl.edu	37	chr17	36486443	36486443	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tcctggggcacattttcttgCttggctggcagttctgcgtt	12	10	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	36486443	36486443	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	silent	c.3009	p.K1003	0.991	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	58	0	0	57	45	44.12	-	-	-	T	36486443	C	T	36486443	2	4	6	1	0	0	0	0	0	0	0	1	6724	796	28	4		4	GPR179	17	36486443	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	9260841	36486443	44708767	66	192										
KRT28	0	genome.wustl.edu	37	chr17	38955885	38955885	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ttaagattttgcatggtcacCttctcatttccagagaggag	9	8	2	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	38955885	38955885	C	A	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.261	p.K87N	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	93	0	0	79	28	26.17	-	-	-	A	38955885	C	A	38955885	3	1	6	1	0	0	0	0	1	0	0	0	8518	680	24	4	1165	4	KRT28	17	38955885	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	2469442	38955885	42239325	67	193										
EVPL	0	genome.wustl.edu	37	chr17	74005590	74005590	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tccaggtcgggcagcagcttCtccacctccttctccacacc	7	19	2	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	74005590	74005590	C	T	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	silent	c.3696	p.E1232	0.010	superfamily_Ferritin/RR-like	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	28	0	0	46	10	17.86	-	-	-	T	74005590	C	T	74005590	2	4	6	1	0	0	0	0	0	0	0	1	5329	912	32	2		2	EVPL	17	74005590	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	35049705	74005590	7189620	68	194										
TMC8	0	genome.wustl.edu	37	chr17	76134257	76134257	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	gtcttcctcttcctcaccttCtacatcaagaaggtgacggc	7	14	5	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	17	76134257	76134257	C	T	SNP	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	silent	c.1521	p.F507	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	71	0	0	117	18	13.33	-	-	-	T	76134257	C	T	76134257	2	4	6	1	0	0	0	0	0	0	0	1	16086	912	32	2		2	TMC8	17	76134257	Silent	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	2128667	76134257	5060953	69	195										
ARHGAP28	0	genome.wustl.edu	37	chr18	6837365	6837365	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	accatgaggaaaaaggataaGcaatctatcagggatgtcag	11	6	3	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	18	6837365	6837365	G	C	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	missense	c.495	p.K165N	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	102	0	0	90	27	23.08	-	-	-	C	6837365	G	C	6837365	3	2	6	1	0	0	0	0	1	0	0	0	879	962	34	4	20	4	ARHGAP28	18	6837365	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		6837365	71239883	70	196										
WDR7	0	genome.wustl.edu	37	chr18	54424074	54424074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	caacaagtgaaagaaacgatCaaagagaacatcaaggaaca	8	7	2	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	18	54424074	54424074	C	G	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	missense	c.2250	p.I750M	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	97	0	0	102	29	22.14	-	-	-	G	54424074	C	G	54424074	3	3	6	1	0	0	0	0	1	0	0	0	17417	816	29	2	2304	2	WDR7	18	54424074	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	47586709	54424074	23653174	71	197										
GPR4	0	genome.wustl.edu	37	chr19	46094651	46094651	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tggttgtagcggtctcggaaGagctcgtcatggaacagggg	17	7	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	19	46094651	46094651	G	C	SNP	GPR4	ENST00000323040	human	ensembl	69_37n	-1	known	silent	c.474	p.L158	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_GPR4_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_GPR4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464	31	0	0	45	10	18.18	-	-	-	C	46094651	G	C	46094651	2	2	6	1	0	0	0	0	0	0	0	1	6744	929	33	2		2	GPR4	19	46094651	Silent	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		46094651	13034332	72	198										
GPR32	0	genome.wustl.edu	37	chr19	51274646	51274646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctgctgctggtgctggtgagCgctttctttatcttctggtc	12	10	3	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	19	51274646	51274646	C	A	SNP	GPR32	ENST00000270590	human	ensembl	69_37n	1	known	missense	c.789	p.S263R	0.150	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511	82	0	0	103	21	16.94	-	-	-	A	51274646	C	A	51274646	3	1	6	1	0	0	0	0	1	0	0	0	6738	767	27	3	791	3	GPR32	19	51274646	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	5179995	51274646	7854337	73	199										
ZNF606	0	genome.wustl.edu	37	chr19	58489941	58489941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cctgtatggtttctctccagTatgagttctccggtgtgcaa	10	10	2	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	19	58489941	58489941	T	C	SNP	ZNF606	ENST00000341164	human	ensembl	69_37n	-1	known	missense	c.2107	p.T703A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704	157	1	0.62	102	110	51.89	-	-	-	C	58489941	T	C	58489941	3	2	6	1	0	0	0	0	1	0	0	0	18128	1638	57	5	275	5	ZNF606	19	58489941	Missense_Mutation	SNP	T	TCGA-A1-A0SH-01A-11D-A099-09	7215295	58489941	639042	74	200										
PREX1	0	genome.wustl.edu	37	chr20	47258785	47258785	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ggccccttgaggagagcattGatggagtccacctgggtggc	16	10	0	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	20	47258785	47258785	G	C	SNP	PREX1	ENST00000482556	human	ensembl	69_37n	-1	known	nonsense	c.1661	p.S554*	1.000	NULL	superfamily_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PREX1	HGNC	ENSG00000124126	73	0	0	91	16	14.81	-	-	-	C	47258785	G	C	47258785	4	2	6	1	0	0	0	0	0	1	0	0	12557	1280	45	2	1331	2	PREX1	20	47258785	Nonsense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09		47258785	15766735	75	201										
CCT8	0	genome.wustl.edu	37	chr21	30439299	30439299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	acgaagtagagatgagacttCatcaatatctcgaaggtttt	9	6	3	2			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	21	30439299	30439299	C	T	SNP	CCT8	ENST00000286788	human	ensembl	69_37n	-1	known	missense	c.475	p.E159K	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_theta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	-	no_errors	CCT8	HGNC	ENSG00000156261	141	0	0	125	31	19.87	-	-	-	T	30439299	C	T	30439299	3	4	6	1	0	0	0	0	1	0	0	0	2989	835	29	2	1215	2	CCT8	21	30439299	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		30439299	17690596	76	202										
KDELR3	0	genome.wustl.edu	37	chr22	38875700	38875700	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	cattccgcctggagtttcttCtggtcccagtcattggcctt	9	13	3	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	22	38875700	38875700	C	G	SNP	KDELR3	ENST00000409006	human	ensembl	69_37n	1	known	missense	c.295	p.L99V	0.657	pfam_ER_ret_rcpt,superfamily_Cyt_c_oxidase_su2-like_TM_dom	pfam_ER_ret_rcpt,superfamily_Cyt_c_oxidase_su2-like_TM_dom,prints_ER_ret_rcpt	-	no_errors	KDELR3	HGNC	ENSG00000100196	139	1	0.7	152	44	22.45	-	-	-	G	38875700	C	G	38875700	3	3	6	1	0	0	0	0	1	0	0	0	8175	912	32	2	305	2	KDELR3	22	38875700	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		38875700	12428866	77	203										
PPARA	0	genome.wustl.edu	37	chr22	46631235	46631237	+	In_Frame_Del	DEL	GCT	GCT	-													0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	aagacggagtcggatgctgcGctgcacccgctactgcagga							TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	22	46631235	46631237	GCT	-	DEL	PPARA	ENST00000262735	human	ensembl	69_37n	1	known	in_frame_del	c.1365_1367	p.L456in_frame_del	0.064:0.961:1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951	40	0	0	39	11	21.57	-	-	-	-	46631237	GCT	-	46631235	7	5	6	1	0	1	0	1	0	0	0	0	12370	1074	38	0	1387	0	PPARA	22	46631235	In_Frame_Del	DEL	GCT	TCGA-A1-A0SH-01A-11D-A099-09	7755535	46631235	4673331	78	204										
DMD	0	genome.wustl.edu	37	chrX	31792151	31792151	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	ctgtgattttataacttgatCaagcagagaaagccagtcgg	10	7	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	31792151	31792151	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.7468	p.D2490N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	189	0	0	162	22	11.96	-	-	-	T	31792151	C	T	31792151	3	4	6	1	0	0	0	0	1	0	0	0	4616	826	29	2	3853	2	DMD	23	31792151	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09		31792151	123478409	79	205										
UPRT	0	genome.wustl.edu	37	chrX	74519698	74519698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	aattccccccagacatttacCggagaaaagtccttctgatg	7	12	1	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	74519698	74519698	C	T	SNP	UPRT	ENST00000373383	human	ensembl	69_37n	1	known	missense	c.691	p.R231W	1.000	pfam_PRibTrfase	pfam_PRibTrfase	-	no_errors	UPRT	HGNC	ENSG00000094841	158	0	0	150	18	10.71	-	-	-	T	74519698	C	T	74519698	3	4	6	1	0	0	0	0	1	0	0	0	17111	643	23	1	709	1	UPRT	23	74519698	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	42727547	74519698	80750862	80	206										
H2BFWT	0	genome.wustl.edu	37	chrX	103267770	103267770	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	agccttcgtgccttcggactCggcgagcttgcccatctgcc	11	16	1	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	103267770	103267770	C	A	SNP	H2BFWT	ENST00000217926	human	ensembl	69_37n	-1	known	nonsense	c.463	p.E155*	0.996	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569	53	0	0	44	8	15.38	-	-	-	A	103267770	C	A	103267770	4	1	6	1	0	0	0	0	0	1	0	0	6983	893	31	3	72	3	H2BFWT	23	103267770	Nonsense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	28748072	103267770	52002790	81	207										
IRS4	0	genome.wustl.edu	37	chrX	107978508	107978508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	agcccaggtgcctcctagcgGacagcagggttaacaggtgg	15	11	0	0			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	107978508	107978508	G	C	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.1067	p.S356C	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	40	0	0	53	18	25.35	-	-	-	C	107978508	G	C	107978508	3	2	6	1	0	0	0	0	1	0	0	0	7896	1174	41	2	2710	2	IRS4	23	107978508	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	4710738	107978508	47292052	82	208										
ACSL4	0	genome.wustl.edu	37	chrX	108911440	108911440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	tctgaggagatagcggggccCctccagacagcatcatgcgg	14	12	2	3			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	108911440	108911440	C	T	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	missense	c.1328	p.G443E	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	101	0	0	86	30	25.86	-	-	-	T	108911440	C	T	108911440	3	4	6	1	0	0	0	0	1	0	0	0	179	623	22	4	831	4	ACSL4	23	108911440	Missense_Mutation	SNP	C	TCGA-A1-A0SH-01A-11D-A099-09	932932	108911440	46359120	83	209										
MTM1	0	genome.wustl.edu	37	chrX	149828220	149828220	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416666666666667	35	1.36805436343694e-12	3.90552995391705	4.01711652402897	3.79394338380513	1	1	26	attgattgtgtgtggcaaatGtcaaaacaggtaaggaatat	11	3	1	1			TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d6ae4-162a-4136-b44f-fad42529a31a	7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd	X	149828220	149828220	G	C	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.1344	p.M448I	1.000	smart_Tyr_Pase_cat	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	371	1	0.26	334	75	18.34	-	-	-	C	149828220	G	C	149828220	3	2	6	1	0	0	0	0	1	0	0	0	10009	1377	48	4	1386	4	MTM1	23	149828220	Missense_Mutation	SNP	G	TCGA-A1-A0SH-01A-11D-A099-09	40916780	149828220	5442340	84	210										
PER3	0	genome.wustl.edu	37	chr1	7886690	7886690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaattatgttgataaattccGagaaaagatcctgtcatcac	7	7	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	7886690	7886690	G	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.2084	p.R695Q	0.849	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	22	0	0	17	4	19.05	-	-	-	A	7886690	G	A	7886690	3	1	7	1	0	0	0	0	1	0	0	0	11804	1058	37	1	2146	1	PER3	1	7886690	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		7886690	241363931	1	211										
ZNF436	0	genome.wustl.edu	37	chr1	23688993	23688993	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gtgtggactcgatagtgtttGatgagatcagatctctcact	11	7	3	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	23688993	23688993	G	C	SNP	ZNF436	ENST00000314011	human	ensembl	69_37n	-1	known	missense	c.882	p.I294M	0.955	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF436	HGNC	ENSG00000125945	48	0	0	34	12	26.09	-	-	-	C	23688993	G	C	23688993	3	2	7	1	0	0	0	0	1	0	0	0	18005	1280	45	2	534	2	ZNF436	1	23688993	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	15802303	23688993	225561628	2	212										
ZNF436	0	genome.wustl.edu	37	chr1	23689523	23689523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atcagtgactggttggagagGatagcttacccactcttctg	11	9	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	23689523	23689523	G	A	SNP	ZNF436	ENST00000314011	human	ensembl	69_37n	-1	known	missense	c.352	p.P118S	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF436	HGNC	ENSG00000125945	55	0	0	34	17	33.33	-	-	-	A	23689523	G	A	23689523	3	1	7	1	0	0	0	0	1	0	0	0	18005	1174	41	2	1064	2	ZNF436	1	23689523	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	530	23689523	225561098	3	213										
SNRNP40	0	genome.wustl.edu	37	chr1	31769474	31769474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttaccgcttgcagcaaggctCccggcgtcgcctgctgctgc	12	16	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	31769474	31769474	C	T	SNP	SNRNP40	ENST00000446633	human	ensembl	69_37n	-1	known	missense	c.125	p.G42E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SNRNP40	HGNC	ENSG00000060688	10	0	0	14	6	30	-	-	-	T	31769474	C	T	31769474	3	4	7	1	0	0	0	0	1	0	0	0	14945	855	30	2	988	2	SNRNP40	1	31769474	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	8079951	31769474	217481147	4	214										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33099308	33099308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttcatccaaaaagtgaaacaGaagagactgtaagtcatctc	7	8	3	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	33099308	33099308	G	A	SNP	ZBTB8OS	ENST00000436661	human	ensembl	69_37n	-1	known	missense	c.296	p.S99F	1.000	pfam_Archease_dom,superfamily_Archease_dom	pfam_Archease_dom,superfamily_Archease_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZBTB8OS	HGNC	ENSG00000176261	26	0	0	31	6	16.22	-	-	-	A	33099308	G	A	33099308	3	1	7	1	0	0	0	0	1	0	0	0	17653	933	33	2	254	2	ZBTB8OS	1	33099308	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1329834	33099308	216151313	5	215										
CYP4A11	0	genome.wustl.edu	37	chr1	47400819	47400819	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aatggcctgtatgtaggactGagaattcctgagggagagta	14	5	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	47400819	47400819	G	C	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.643	p.Q215E	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	50	0	0	44	9	16.98	-	-	-	C	47400819	G	C	47400819	3	2	7	1	0	0	0	0	1	0	0	0	4214	1299	45	2	944	2	CYP4A11	1	47400819	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	14301511	47400819	201849802	6	216										
SNX7	0	genome.wustl.edu	37	chr1	99167432	99167432	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gattccaaagttgaagttttGacctataaaaaggcagatac	8	6	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	99167432	99167432	G	A	SNP	SNX7	ENST00000306121	human	ensembl	69_37n	1	known	silent	c.1098	p.L366	0.194	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	31	0	0	38	13	25.49	-	-	-	A	99167432	G	A	99167432	2	1	7	1	0	0	0	0	0	0	0	1	14996	1281	45	2		2	SNX7	1	99167432	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	51766613	99167432	150083189	7	217										
CLCC1	0	genome.wustl.edu	37	chr1	109479811	109479811	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcaagtcaacatctctctctCtcaaaatctctcttctaccc	1	16	8	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	109479811	109479811	C	G	SNP	CLCC1	ENST00000356970	human	ensembl	69_37n	-1	known	missense	c.1271	p.R424T	0.995	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940	58	0	0	41	15	26.79	-	-	-	G	109479811	C	G	109479811	3	3	7	1	0	0	0	0	1	0	0	0	3490	913	32	2	392	2	CLCC1	1	109479811	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	10312379	109479811	139770810	8	218										
AMPD2	0	genome.wustl.edu	37	chr1	110171114	110171114	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aagtactttgctcacatcatCaaggtaaggaggcagccttc	9	10	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	110171114	110171114	C	A	SNP	AMPD2	ENST00000369840	human	ensembl	69_37n	1	novel	missense	c.1477	p.Q493K	0.999	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AMPD2	HGNC	ENSG00000116337	20	0	0	20	4	16.67	-	-	-	A	110171114	C	A	110171114	3	1	7	1	0	0	0	0	1	0	0	0	586	816	29	2	1649	2	AMPD2	1	110171114	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	691303	110171114	139079507	9	219										
HIST2H2BE	0	genome.wustl.edu	37	chr1	149857969	149857969	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggcgggaagcctctcccgcGatgcgctcgaagatgtcgtt	14	12	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	149857969	149857969	G	A	SNP	HIST2H2BE	ENST00000369155	human	ensembl	69_37n	-1	known	silent	c.222	p.I74	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	62	0	0	74	21	22.11	-	-	-	A	149857969	G	A	149857969	2	1	7	1	0	0	0	0	0	0	0	1	7230	1048	37	1		1	HIST2H2BE	1	149857969	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	39686855	149857969	99392652	10	220										
TCHH	0	genome.wustl.edu	37	chr1	152081408	152081408	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctcttcacggaattttctgtCacgctcttggcggctcagct	9	13	6	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	152081408	152081408	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.4285	p.D1429N	0.155	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	97	0	0	135	20	12.9	-	-	-	T	152081408	C	T	152081408	3	4	7	1	0	0	0	0	1	0	0	0	15795	826	29	2	1550	2	TCHH	1	152081408	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2223439	152081408	97169213	11	221										
DAP3	0	genome.wustl.edu	37	chr1	155686914	155686914	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tttcccgcaccaatgagaatGacccggtgagttactaatat	8	10	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	155686914	155686914	G	A	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	missense	c.163	p.D55N	0.970	NULL	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	38	0	0	54	8	12.9	-	-	-	A	155686914	G	A	155686914	3	1	7	1	0	0	0	0	1	0	0	0	4266	1290	45	2	169	2	DAP3	1	155686914	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3605506	155686914	93563707	12	222										
OR6K3	0	genome.wustl.edu	37	chr1	158687142	158687142	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgaaacgcaagtacatgagtGatacactgccaaagaatatc	8	8	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	158687142	158687142	G	C	SNP	OR6K3	ENST00000368146	human	ensembl	69_37n	-1	known	nonsense	c.812	p.S271*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757	35	0	0	33	21	38.89	-	-	-	C	158687142	G	C	158687142	4	2	7	1	0	0	0	0	0	1	0	0	11276	1294	45	2	185	2	OR6K3	1	158687142	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3000228	158687142	90563479	13	223										
POU2F1	0	genome.wustl.edu	37	chr1	167301713	167301713	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgatttattgcagactcaaGaatgaacaatccgtcagaaa	7	8	2	5			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	167301713	167301713	G	C	SNP	POU2F1	ENST00000367866	human	ensembl	69_37n	1	known	missense	c.68	p.R23T	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	44	0	0	49	35	41.67	-	-	-	C	167301713	G	C	167301713	3	2	7	1	0	0	0	0	1	0	0	0	12344	957	33	2	1	2	POU2F1	1	167301713	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	8614571	167301713	81948908	14	224										
CEP350	0	genome.wustl.edu	37	chr1	180003060	180003060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cccctgtcaccaagttcccaGaaatcattgcagtttgacgt	7	13	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	180003060	180003060	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.3789	p.Q1263H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	25	0	0	51	17	25	-	-	-	C	180003060	G	C	180003060	3	2	7	1	0	0	0	0	1	0	0	0	3283	933	33	2	3847	2	CEP350	1	180003060	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	12701347	180003060	69247561	15	225										
RGS8	0	genome.wustl.edu	37	chr1	182617366	182617366	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tggtcttcttgaactcctcaCaggccaaccagaattccagg	8	13	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	182617366	182617366	C	G	SNP	RGS8	ENST00000258302	human	ensembl	69_37n	-1	known	missense	c.320	p.C107S	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS8	HGNC	ENSG00000135824	30	0	0	56	9	13.85	-	-	-	G	182617366	C	G	182617366	3	3	7	1	0	0	0	0	1	0	0	0	13396	478	17	4	284	4	RGS8	1	182617366	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2614306	182617366	66633255	16	226										
PTPRC	0	genome.wustl.edu	37	chr1	198676020	198676020	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaatgtaaaaatgcgtctgtTtccatatctcataattcatg	6	7	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	198676020	198676020	T	G	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	silent	c.843	p.V281	0.001	pirsf_Leukocyte_common_ag,pfam_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	56	0	0	58	25	30.12	-	-	-	G	198676020	T	G	198676020	2	3	7	1	0	0	0	0	0	0	0	1	12880	1828	64	5		5	PTPRC	1	198676020	Silent	SNP	T	TCGA-A1-A0SI-01A-11D-A142-09	16058654	198676020	50574601	17	227										
KIF21B	0	genome.wustl.edu	37	chr1	200974018	200974018	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgagtgtctcatactcactcGagggaggtgtaccatcagga	12	9	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	200974018	200974018	G	C	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.776	p.S259W	0.045	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	28	0	0	21	4	16	-	-	-	C	200974018	G	C	200974018	3	2	7	1	0	0	0	0	1	0	0	0	8341	1059	37	3	4214	3	KIF21B	1	200974018	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	2297998	200974018	48276603	18	228										
CACNA1S	0	genome.wustl.edu	37	chr1	201063115	201063115	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcttcatggcggcttcaatcGagaagacaatgaggaagaaa	11	7	3	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	201063115	201063115	G	C	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.293	p.S98W	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	29	0	0	27	6	18.18	-	-	-	C	201063115	G	C	201063115	3	2	7	1	0	0	0	0	1	0	0	0	2572	1059	37	3	5496	3	CACNA1S	1	201063115	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	89097	201063115	48187506	19	229										
ITPKB	0	genome.wustl.edu	37	chr1	226924709	226924709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgtgcctggatgtgcgcctCaaacatgcccactttctggt	10	13	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	1	226924709	226924709	C	G	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.451	p.E151Q	1.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	11	0	0	16	10	38.46	-	-	-	G	226924709	C	G	226924709	3	3	7	1	0	0	0	0	1	0	0	0	7972	835	29	2	2417	2	ITPKB	1	226924709	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	25861594	226924709	22325912	20	230										
KIDINS220	0	genome.wustl.edu	37	chr2	8933973	8933973	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttgagttaaaatactcttctGatggctacagtcaatattat	6	6	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	8933973	8933973	G	T	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.1243	p.Q415K	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	42	0	0	32	8	20	-	-	-	T	8933973	G	T	8933973	3	4	7	1	0	0	0	0	1	0	0	0	8323	1299	45	2	4148	2	KIDINS220	2	8933973	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		8933973	234265400	21	231										
CLEC4F	0	genome.wustl.edu	37	chr2	71043268	71043268	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tggatctcggcactggccttCtgcagattgctgtctaacat	10	11	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	71043268	71043268	C	A	SNP	CLEC4F	ENST00000272367	human	ensembl	69_37n	-1	known	missense	c.1245	p.Q415H	0.108	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672	78	0	0	66	15	18.52	-	-	-	A	71043268	C	A	71043268	3	1	7	1	0	0	0	0	1	0	0	0	3546	912	32	2	540	2	CLEC4F	2	71043268	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	62109295	71043268	172156105	22	232										
CD207	0	genome.wustl.edu	37	chr2	71060130	71060130	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggaatgagagaaaagtaataGaagttccccttgaagtactt	10	5	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	71060130	71060130	G	C	SNP	CD207	ENST00000410009	human	ensembl	69_37n	-1	known	missense	c.618	p.F206L	0.966	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD207	HGNC	ENSG00000116031	30	0	0	22	12	35.29	-	-	-	C	71060130	G	C	71060130	3	2	7	1	0	0	0	0	1	0	0	0	3012	933	33	2	380	2	CD207	2	71060130	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	16862	71060130	172139243	23	233										
TACR1	0	genome.wustl.edu	37	chr2	75425872	75425872	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aaatagttcgtcactgtcctCattcttttgtgggctaagat	8	8	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	75425872	75425872	C	T	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	missense	c.189	p.M63I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Neurokn_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	64	0	0	49	18	26.87	-	-	-	T	75425872	C	T	75425872	3	4	7	1	0	0	0	0	1	0	0	0	15597	826	29	2	1058	2	TACR1	2	75425872	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	4365742	75425872	167773501	24	234										
FAHD2B	0	genome.wustl.edu	37	chr2	97757395	97757395	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gggttgaaagggccacttctGagcctgcagcagagctgtga	15	9	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	97757395	97757395	G	A	SNP	FAHD2B	ENST00000272610	human	ensembl	69_37n	-1	known	nonsense	c.49	p.Q17*	0.968	NULL	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199	36	0	0	37	14	27.45	-	-	-	A	97757395	G	A	97757395	4	1	7	1	0	0	0	0	0	1	0	0	5414	1299	45	2	923	2	FAHD2B	2	97757395	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	22331523	97757395	145441978	25	235										
RGPD4	0	genome.wustl.edu	37	chr2	108455374	108455374	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcaaaatactgggtggaaaGagcagcaaaacttttcccag	10	8	0	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	108455374	108455374	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.359	p.R120T	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	93	0	0	56	23	29.11	-	-	-	C	108455374	G	C	108455374	3	2	7	1	0	0	0	0	1	0	0	0	13371	942	33	2	373	2	RGPD4	2	108455374	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	10697979	108455374	134743999	26	236										
DPP10	0	genome.wustl.edu	37	chr2	116101489	116101489	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agaggctcggtggatcaatgGtaagtgtatacctttttaaa	11	5	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	116101489	116101489	G	C	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	splice_site	c.283+1	e3+1	1.000	-	-	-	no_errors	DPP10	HGNC	ENSG00000175497	48	0	0	33	13	28.26	-	-	-	C	116101489	G	C	116101489	5	2	7	1	0	0	0	0	0	0	1	0	4762	1275	44	4	453	4	DPP10	2	116101489	Splice_Site	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	7646115	116101489	127097884	27	237										
SMPD4	0	genome.wustl.edu	37	chr2	130910973	130910973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgcttttttccattctcatcCtgggtggtgcccaaggcgag	11	11	1	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	130910973	130910973	C	T	SNP	SMPD4	ENST00000439886	human	ensembl	69_37n	-1	novel	missense	c.1685	p.R562K	0.962	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMPD4	HGNC	ENSG00000136699	28	0	0	24	12	33.33	-	-	-	T	130910973	C	T	130910973	3	4	7	1	0	0	0	0	1	0	0	0	14896	680	24	4	551	4	SMPD4	2	130910973	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	14809484	130910973	112288400	28	238										
SCN3A	0	genome.wustl.edu	37	chr2	165947193	165947193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gttgggttttgctatgagaaGaggaggatccagggcagctg	17	5	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	165947193	165947193	G	C	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.5470	p.L1824V	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	72	0	0	54	12	18.18	-	-	-	C	165947193	G	C	165947193	3	2	7	1	0	0	0	0	1	0	0	0	14006	942	33	2	536	2	SCN3A	2	165947193	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	35036220	165947193	77252180	29	239										
DNAH7	0	genome.wustl.edu	37	chr2	196737067	196737067	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atgacacgggagaaatcacgGaggttgaacaagtagtgaga	14	5	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	196737067	196737067	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.6540	p.L2180	0.991	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	67	0	0	41	11	21.15	-	-	-	T	196737067	G	T	196737067	2	4	7	1	0	0	0	0	0	0	0	1	4641	1161	41	2		2	DNAH7	2	196737067	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	30789874	196737067	46462306	30	240										
BMPR2	0	genome.wustl.edu	37	chr2	203329576	203329576	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gtgcgtttaaagatccgtatCagcaagaccttgggataggt	12	7	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	203329576	203329576	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	nonsense	c.121	p.Q41*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	21	0	0	27	5	15.62	-	-	-	T	203329576	C	T	203329576	4	4	7	1	0	0	0	0	0	1	0	0	1476	827	29	2	127	2	BMPR2	2	203329576	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	6592509	203329576	39869797	31	241										
OBSL1	0	genome.wustl.edu	37	chr2	220430106	220430106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcaactcgctctcctccacCttctgcccatccttgtacca	4	19	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	220430106	220430106	C	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.2265	p.K755N	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	61	0	0	59	14	19.18	-	-	-	A	220430106	C	A	220430106	3	1	7	1	0	0	0	0	1	0	0	0	10886	680	24	4	3641	4	OBSL1	2	220430106	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	17100530	220430106	22769267	32	242										
SCG2	0	genome.wustl.edu	37	chr2	224462236	224462236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttccagcactttcattaacaGatcttcatcccagtactgcc	4	14	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	2	224462236	224462236	G	C	SNP	SCG2	ENST00000305409	human	ensembl	69_37n	-1	known	missense	c.1765	p.L589V	0.627	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	74	0	0	56	11	16.42	-	-	-	C	224462236	G	C	224462236	3	2	7	1	0	0	0	0	1	0	0	0	13978	933	33	2	92	2	SCG2	2	224462236	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	4032130	224462236	18737137	33	243										
OXTR	0	genome.wustl.edu	37	chr3	8794699	8794699	+	Frame_Shift_Del	DEL	G	G	-													0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgggagcagctcctctggctGgagctgcgatggctcaggac							TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	8794699	8794699	G	-	DEL	OXTR	ENST00000316793	human	ensembl	69_37n	-1	known	frame_shift_del	c.1134	p.S379fs	0.998	prints_Oxytocn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914	19	0	0	17	2	10.53	-	-	-	-	8794699	G	-	8794699	7	5	7	1	0	1	0	1	0	0	0	0	11411	1335	47	0	39	0	OXTR	3	8794699	Frame_Shift_Del	DEL	G	TCGA-A1-A0SI-01A-11D-A142-09		8794699	189227731	34	244										
GRIP2	0	genome.wustl.edu	37	chr3	14552701	14552701	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcctcgtccttccggatcttCagcttcaccaggtcctcgca	7	17	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	14552701	14552701	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	54	0	0	37	12	24.49	-	-	-	T	14552701	C	T	14552701	1	4	7	0	1	0	0	0	0	0	0	0	6839	813	29	2		2	GRIP2	3	14552701	RNA	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	5758002	14552701	183469729	35	245										
CCRL2	0	genome.wustl.edu	37	chr3	46449655	46449655	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcgatgaggcagagcaatgtGacaagtatgacgcccaggca	14	9	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	46449655	46449655	G	A	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	missense	c.121	p.D41N	0.000	prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	43	0	0	38	12	24	-	-	-	A	46449655	G	A	46449655	3	1	7	1	0	0	0	0	1	0	0	0	2979	1290	45	2	127	2	CCRL2	3	46449655	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	31896954	46449655	151572775	36	246										
DHX30	0	genome.wustl.edu	37	chr3	47859511	47859511	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atgccctctctctttccccaGatcgggcccagcacaggcag	9	17	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	47859511	47859511	G	T	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	splice_site	c.29-1	e2-1	1.000	-	-	-	no_errors	DHX30	HGNC	ENSG00000132153	36	0	0	33	6	15.38	-	-	-	T	47859511	G	T	47859511	5	4	7	1	0	0	0	0	0	0	1	0	4540	956	33	2	34	2	DHX30	3	47859511	Splice_Site	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1409856	47859511	150162919	37	247										
RBM6	0	genome.wustl.edu	37	chr3	50036917	50036917	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tggagttttcactcttggaaGatgccatcggatgcatggag	13	7	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	50036917	50036917	G	C	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.1528	p.D510H	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	55	0	0	64	16	20	-	-	-	C	50036917	G	C	50036917	3	2	7	1	0	0	0	0	1	0	0	0	13227	942	33	2	1546	2	RBM6	3	50036917	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	2177406	50036917	147985513	38	248										
RBM5	0	genome.wustl.edu	37	chr3	50151418	50151418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaacgctgggctaagagtttGaataagcagaaagaaaactt	11	5	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	50151418	50151418	G	C	SNP	RBM5	ENST00000347869	human	ensembl	69_37n	1	known	missense	c.1653	p.L551F	0.994	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	32	0	0	31	6	16.22	-	-	-	C	50151418	G	C	50151418	3	2	7	1	0	0	0	0	1	0	0	0	13226	1281	45	2	1723	2	RBM5	3	50151418	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	114501	50151418	147871012	39	249										
GRM2	0	genome.wustl.edu	37	chr3	51746802	51746802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggcctttgagggtgtggtgcGagccctgctgcagaagccca	16	11	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	51746802	51746802	G	A	SNP	GRM2	ENST00000395052	human	ensembl	69_37n	1	known	missense	c.764	p.R255Q	0.996	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082	18	0	0	21	7	25	-	-	-	A	51746802	G	A	51746802	3	1	7	1	0	0	0	0	1	0	0	0	6848	1058	37	1	770	1	GRM2	3	51746802	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1595384	51746802	146275628	40	250										
DNAH1	0	genome.wustl.edu	37	chr3	52383095	52383095	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aatgacattgcctcctttctCaagtgcgtacgtgtgcccat	8	12	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	52383095	52383095	C	G	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.2298	p.L766	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	30	0	0	20	5	20	-	-	-	G	52383095	C	G	52383095	2	3	7	1	0	0	0	0	0	0	0	1	4633	813	29	2		2	DNAH1	3	52383095	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	636293	52383095	145639335	41	251										
STAB1	0	genome.wustl.edu	37	chr3	52550384	52550384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cactgcagtgtgtgactgtgCccatgggctgtgccaggagg	16	10	0	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	52550384	52550384	C	G	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.4157	p.A1386G	0.717	smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	45	0	0	40	13	24.53	-	-	-	G	52550384	C	G	52550384	3	3	7	1	0	0	0	0	1	0	0	0	15328	739	26	4	4311	4	STAB1	3	52550384	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	167289	52550384	145472046	42	252										
DPPA4	0	genome.wustl.edu	37	chr3	109052730	109052730	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctcttacctttactgcctttGatagacattttttctttggt	5	9	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	109052730	109052730	G	A	SNP	DPPA4	ENST00000495679	human	ensembl	69_37n	-1	known	missense	c.92	p.S31L	0.000	NULL	NULL	-	no_errors	DPPA4	HGNC	ENSG00000121570	116	0	0	74	71	48.97	-	-	-	A	109052730	G	A	109052730	3	1	7	1	0	0	0	0	1	0	0	0	4771	1280	45	2	773	2	DPPA4	3	109052730	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	56502346	109052730	88969700	43	253										
SIDT1	0	genome.wustl.edu	37	chr3	113323818	113323818	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tccagctggtcattacctatCagacagtaagtgctgcccca	8	13	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	113323818	113323818	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	69_37n	1	known	nonsense	c.1399	p.Q467*	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	46	0	0	51	7	12.07	-	-	-	T	113323818	C	T	113323818	4	4	7	1	0	0	0	0	0	1	0	0	14391	827	29	2	1453	2	SIDT1	3	113323818	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	4271088	113323818	84698612	44	254										
ARHGAP31	0	genome.wustl.edu	37	chr3	119133900	119133900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccagccccatcagcctagcaGagggaaaggagctagggaca	13	12	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	119133900	119133900	G	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.3124	p.E1042Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	33	0	0	33	7	17.5	-	-	-	C	119133900	G	C	119133900	3	2	7	1	0	0	0	0	1	0	0	0	882	943	33	2	3170	2	ARHGAP31	3	119133900	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	5810082	119133900	78888530	45	255										
UMPS	0	genome.wustl.edu	37	chr3	124449396	124449396	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gctttcaagtttggggacttCgtgctgaagagcgggctttc	14	8	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	124449396	124449396	C	T	SNP	UMPS	ENST00000232607	human	ensembl	69_37n	1	known	silent	c.78	p.F26	1.000	tigrfam_Or_phspho_trans_clade-1	pfam_OMPdeCOase_dom,pfam_PRibTrfase,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_clade-1	-	no_errors	UMPS	HGNC	ENSG00000114491	42	0	0	53	6	10.17	-	-	-	T	124449396	C	T	124449396	2	4	7	1	0	0	0	0	0	0	0	1	17078	883	31	1		1	UMPS	3	124449396	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	5315496	124449396	73573034	46	256										
ZNF148	0	genome.wustl.edu	37	chr3	124951819	124951819	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcttgatccaacattctctGacggggtgacctctggtact	10	11	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	124951819	124951819	G	C	SNP	ZNF148	ENST00000360647	human	ensembl	69_37n	-1	known	nonsense	c.1751	p.S584*	0.730	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848	38	0	0	23	7	23.33	-	-	-	C	124951819	G	C	124951819	4	2	7	1	0	0	0	0	0	1	0	0	17830	1294	45	2	637	2	ZNF148	3	124951819	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	502423	124951819	73070611	47	257										
ACPP	0	genome.wustl.edu	37	chr3	132036383	132036383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gctttttttctggctagaccGaagtgtactagccaaggagt	11	8	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	132036383	132036383	G	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.83	p.R28L	0.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	33	0	0	44	8	15.38	-	-	-	T	132036383	G	T	132036383	3	4	7	1	0	0	0	0	1	0	0	0	167	1058	37	3	85	3	ACPP	3	132036383	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	7084564	132036383	65986047	48	258										
RNF7	0	genome.wustl.edu	37	chr3	141464080	141464080	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cagaacaatcgctgccctctCtgccagcaggactgggtggt	12	13	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	141464080	141464080	C	G	SNP	RNF7	ENST00000273480	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.999	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	RNF7	HGNC	ENSG00000114125	22	0	0	19	4	17.39	-	-	-	G	141464080	C	G	141464080	2	3	7	1	0	0	0	0	0	0	0	1	13585	900	32	2		2	RNF7	3	141464080	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	9427697	141464080	56558350	49	259										
CP	0	genome.wustl.edu	37	chr3	148896325	148896325	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctcatcaaaaactagaaacaGaagggcaaattccagtttcc	6	10	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	148896325	148896325	G	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	silent	c.2755	p.L919	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	64	0	0	44	52	54.17	-	-	-	A	148896325	G	A	148896325	2	1	7	1	0	0	0	0	0	0	0	1	3817	933	33	2		2	CP	3	148896325	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	7432245	148896325	49126105	50	260										
IGSF10	0	genome.wustl.edu	37	chr3	151163473	151163473	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcagaagcaattgtgctcttCaaagtctgagtacttgcttg	9	8	4	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	151163473	151163473	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.4296	p.L1432	0.001	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	47	0	0	72	12	14.29	-	-	-	T	151163473	C	T	151163473	2	4	7	1	0	0	0	0	0	0	0	1	7651	825	29	2		2	IGSF10	3	151163473	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2267148	151163473	46858957	51	261										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	46	0	0	28	20	41.67	-	-	-	A	178938934	G	A	178938934	3	1	7	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	27775461	178938934	19083496	52	262										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	32	0	0	31	21	40.38	-	-	-	G	178952085	A	G	178952085	3	3	7	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A1-A0SI-01A-11D-A142-09	13151	178952085	19070345	53	263										
CCDC39	0	genome.wustl.edu	37	chr3	180379751	180379751	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctttgagcaatggccttaaaAtgttcttcactttcagtctc	6	10	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	180379751	180379751	A	G	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	silent	c.255	p.H85	1.000	superfamily_tRNA-bd_arm	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	69	0	0	55	50	47.62	-	-	-	G	180379751	A	G	180379751	2	3	7	1	0	0	0	0	0	0	0	1	2837	98	4	5		5	CCDC39	3	180379751	Silent	SNP	A	TCGA-A1-A0SI-01A-11D-A142-09	1427666	180379751	17642679	54	264										
HTR3C	0	genome.wustl.edu	37	chr3	183777385	183777385	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggctacaacgtcttcctgctCatgatgaatgacttgctccc	8	13	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	183777385	183777385	C	G	SNP	HTR3C	ENST00000318351	human	ensembl	69_37n	1	known	silent	c.882	p.L294	0.992	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3C	HGNC	ENSG00000178084	67	0	0	93	14	13.08	-	-	-	G	183777385	C	G	183777385	2	3	7	1	0	0	0	0	0	0	0	1	7500	813	29	2		2	HTR3C	3	183777385	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	3397634	183777385	14245045	55	265										
PYDC2	0	genome.wustl.edu	37	chr3	191179038	191179038	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttgagcaagttcaagtctctGatcagaacaatctccctggg	9	10	4	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	3	191179038	191179038	G	A	SNP	PYDC2	ENST00000518817	human	ensembl	69_37n	1	known	silent	c.87	p.L29	0.017	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	-	no_errors	PYDC2	HGNC	ENSG00000253548	26	0	0	15	16	51.61	-	-	-	A	191179038	G	A	191179038	2	1	7	1	0	0	0	0	0	0	0	1	12942	1277	45	2		2	PYDC2	3	191179038	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	7401653	191179038	6843392	56	266										
GYPE	0	genome.wustl.edu	37	chr4	144801602	144801602	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgtaactctttgtgactgaaGaagaggttgaagtgtgcatt	12	4	1	5			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	4	144801602	144801602	G	C	SNP	GYPE	ENST00000358615	human	ensembl	69_37n	-1	known	missense	c.98	p.S33C	0.000	NULL	NULL	-	no_errors	GYPE	HGNC	ENSG00000197465	126	0	0	86	28	24.56	-	-	-	C	144801602	G	C	144801602	3	2	7	1	0	0	0	0	1	0	0	0	6962	942	33	2	146	2	GYPE	4	144801602	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		144801602	46352674	57	267										
RAI14	0	genome.wustl.edu	37	chr5	34824468	34824468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aaaaggaaaatattcagactCtcttgaaatccaaagagcaa	6	7	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	34824468	34824468	C	G	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	1	known	missense	c.2530	p.L844V	0.939	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	20	0	0	11	6	35.29	-	-	-	G	34824468	C	G	34824468	3	3	7	1	0	0	0	0	1	0	0	0	13091	913	32	2	2640	2	RAI14	5	34824468	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		34824468	146090792	58	268										
GAPT	0	genome.wustl.edu	37	chr5	57790418	57790418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tttctgtaggaatttcgcttCttttactcttagtggtttgt	8	6	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	57790418	57790418	C	G	SNP	GAPT	ENST00000318469	human	ensembl	69_37n	1	known	missense	c.55	p.L19V	0.003	pfam_GF_rcpt-bound_2-bd_adaptor	pfam_GF_rcpt-bound_2-bd_adaptor	-	no_errors	GAPT	HGNC	ENSG00000175857	56	0	0	41	10	19.61	-	-	-	G	57790418	C	G	57790418	3	3	7	1	0	0	0	0	1	0	0	0	6288	913	32	2	57	2	GAPT	5	57790418	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	22965950	57790418	123124842	59	269										
ZNF366	0	genome.wustl.edu	37	chr5	71756672	71756672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctcctcgctctcctggggctCggctttccggggcagcagag	14	15	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	71756672	71756672	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.652	p.E218K	0.049	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	27	0	0	30	10	25	-	-	-	T	71756672	C	T	71756672	3	4	7	1	0	0	0	0	1	0	0	0	17966	893	31	1	1598	1	ZNF366	5	71756672	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	13966254	71756672	109158588	60	270										
SNCAIP	0	genome.wustl.edu	37	chr5	121786699	121786699	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcgcagaaagcctgcacctGatgattaagaaacacacctt	8	11	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	121786699	121786699	G	A	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	silent	c.2298	p.L766	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	36	0	0	28	5	15.15	-	-	-	A	121786699	G	A	121786699	2	1	7	1	0	0	0	0	0	0	0	1	14930	1277	45	2		2	SNCAIP	5	121786699	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	50030027	121786699	59128561	61	271										
ODZ2	0	genome.wustl.edu	37	chr5	167675132	167675132	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cagtacacggcctatggggaGatttattatgactccaaccc	9	11	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	167675132	167675132	G	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	silent	c.7188	p.E2396	1.000	tigrfam_Rhs_assc_core	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	25	0	0	21	8	27.59	-	-	-	A	167675132	G	A	167675132	2	1	7	1	0	0	0	0	0	0	0	1	10908	933	33	2		2	ODZ2	5	167675132	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	45888433	167675132	13240128	62	272										
TRIM41	0	genome.wustl.edu	37	chr5	180651357	180651357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcaggtccagctgggacaacAtggactatgtgtgggaggag	17	7	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	5	180651357	180651357	A	G	SNP	TRIM41	ENST00000315073	human	ensembl	69_37n	1	known	missense	c.358	p.M120V	1.000	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063	39	0	0	42	9	17.65	-	-	-	G	180651357	A	G	180651357	3	3	7	1	0	0	0	0	1	0	0	0	16612	217	8	5	360	5	TRIM41	5	180651357	Missense_Mutation	SNP	A	TCGA-A1-A0SI-01A-11D-A142-09	12976225	180651357	263903	63	273										
SLC39A7	0	genome.wustl.edu	37	chr6	33169176	33169176	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acagccacaggcactcacatGaagatttccaccatggccac	7	15	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	6	33169176	33169176	G	A	SNP	SLC39A7	ENST00000374675	human	ensembl	69_37n	1	known	missense	c.154	p.E52K	1.000	prints_Kininogen	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473	30	0	0	25	10	28.57	-	-	-	A	33169176	G	A	33169176	3	1	7	1	0	0	0	0	1	0	0	0	14712	1291	45	2	156	2	SLC39A7	6	33169176	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		33169176	137945891	64	274										
KIAA1009	0	genome.wustl.edu	37	chr6	84884604	84884604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cgcacccctccatttatcctCtgcttcctgaactcttttaa	3	16	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	6	84884604	84884604	C	G	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.1867	p.E623Q	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	51	0	0	34	15	30.61	-	-	-	G	84884604	C	G	84884604	3	3	7	1	0	0	0	0	1	0	0	0	8255	922	32	2	2396	2	KIAA1009	6	84884604	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	51715428	84884604	86230463	65	275										
PRDM13	0	genome.wustl.edu	37	chr6	100055049	100055049	+	Frame_Shift_Del	DEL	A	A	-													0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcagggagcccgggcctaagAaaaaggtattgaccattcag							TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	6	100055049	100055049	A	-	DEL	PRDM13	ENST00000369214	human	ensembl	69_37n	1	known	frame_shift_del	c.139	p.K48fs	1.000	pfscan_SET_dom	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238	28	0	0	13	2	13.33	-	-	-	-	100055049	A	-	100055049	7	5	7	1	0	1	0	1	0	0	0	0	12535	247	9	0	141	0	PRDM13	6	100055049	Frame_Shift_Del	DEL	A	TCGA-A1-A0SI-01A-11D-A142-09	15170445	100055049	71060018	66	276										
MYB	0	genome.wustl.edu	37	chr6	135511005	135511007	+	In_Frame_Del	DEL	AAG	AAG	-													0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	catcaagggtccttggaccaAagaagaagatcagagagtaa							TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	6	135511005	135511007	AAG	-	DEL	MYB	ENST00000341911	human	ensembl	69_37n	1	known	in_frame_del	c.290_292	p.E99in_frame_del	1.000:1.000:1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	26	0	0	27	6	17.65	-	-	-	-	135511007	AAG	-	135511005	7	5	7	1	0	1	0	1	0	0	0	0	10079	14	1	0	304	0	MYB	6	135511005	In_Frame_Del	DEL	AAG	TCGA-A1-A0SI-01A-11D-A142-09	35455956	135511005	35604062	67	277										
SYNE1	0	genome.wustl.edu	37	chr6	152451876	152451876	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgctatgtggactgctgacaGagggtccaggctgtgagaga	16	7	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	6	152451876	152451876	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.26132	p.S8711F	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	33	0	0	23	8	25.81	-	-	-	A	152451876	G	A	152451876	3	1	7	1	0	0	0	0	1	0	0	0	15537	942	33	2	269	2	SYNE1	6	152451876	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	16940871	152451876	18663191	68	278										
URGCP	0	genome.wustl.edu	37	chr7	43916676	43916676	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgcatgcagaatagctgctgGaatgtccttggtttcagcta	11	8	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	43916676	43916676	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.2386	p.P796A	0.047	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	32	0	0	27	7	20.59	-	-	-	C	43916676	G	C	43916676	3	2	7	1	0	0	0	0	1	0	0	0	17123	1174	41	2	413	2	URGCP	7	43916676	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		43916676	115221987	69	279										
URGCP	0	genome.wustl.edu	37	chr7	43916993	43916993	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttgacagaaccaccagccttGaccgtctctccagtcggacg	9	15	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	43916993	43916993	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	nonsense	c.2069	p.S690*	0.000	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	13	0	0	8	4	33.33	-	-	-	C	43916993	G	C	43916993	4	2	7	1	0	0	0	0	0	1	0	0	17123	1294	45	2	730	2	URGCP	7	43916993	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	317	43916993	115221670	70	280										
BAZ1B	0	genome.wustl.edu	37	chr7	72877401	72877401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	caaatttggcttccgtgctaGatgaatagagtgaataatgt	10	5	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	72877401	72877401	G	C	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.3100	p.L1034V	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	36	0	0	38	7	15.56	-	-	-	C	72877401	G	C	72877401	3	2	7	1	0	0	0	0	1	0	0	0	1334	933	33	2	1383	2	BAZ1B	7	72877401	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	28960408	72877401	86261262	71	281										
PTPN12	0	genome.wustl.edu	37	chr7	77240143	77240143	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aatgagaacacaaaggcattCtgcagtacaaacaaaggtat	8	7	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	77240143	77240143	C	G	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	missense	c.824	p.S275C	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	27	0	0	24	6	20	-	-	-	G	77240143	C	G	77240143	3	3	7	1	0	0	0	0	1	0	0	0	12862	913	32	2	862	2	PTPN12	7	77240143	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	4362742	77240143	81898520	72	282										
CYP3A4	0	genome.wustl.edu	37	chr7	99366074	99366074	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttgttgagagagtcgatgttCactccaaatgatgtgctagt	11	6	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	99366074	99366074	C	T	SNP	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	silent	c.573	p.V191	0.596	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	60	0	0	60	16	21.05	-	-	-	T	99366074	C	T	99366074	2	4	7	1	0	0	0	0	0	0	0	1	4209	813	29	2		2	CYP3A4	7	99366074	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	22125931	99366074	59772589	73	283										
AGFG2	0	genome.wustl.edu	37	chr7	100146506	100146506	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgacaactttcactgagcctGaagtagtattcctgcaatcc	7	11	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	100146506	100146506	G	A	SNP	AGFG2	ENST00000300176	human	ensembl	69_37n	1	known	missense	c.283	p.E95K	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351	28	0	0	13	9	40.91	-	-	-	A	100146506	G	A	100146506	3	1	7	1	0	0	0	0	1	0	0	0	381	1291	45	2	289	2	AGFG2	7	100146506	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	780432	100146506	58992157	74	284										
ARMC10	0	genome.wustl.edu	37	chr7	102732968	102732968	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gatgtcttctctggtcctctGaactctgctgtgcagctggc	11	12	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	102732968	102732968	G	A	SNP	ARMC10	ENST00000323716	human	ensembl	69_37n	1	known	silent	c.573	p.L191	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC10	HGNC	ENSG00000170632	52	0	0	21	12	36.36	-	-	-	A	102732968	G	A	102732968	2	1	7	1	0	0	0	0	0	0	0	1	954	1277	45	2		2	ARMC10	7	102732968	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	2586462	102732968	56405695	75	285										
RINT1	0	genome.wustl.edu	37	chr7	105205803	105205803	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcccgttgctgctgacgttaCgagaccatttacttcagttg	10	11	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	105205803	105205803	C	T	SNP	RINT1	ENST00000257700	human	ensembl	69_37n	1	known	nonsense	c.1966	p.R656*	0.655	pfam_RINT1_TIP1	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249	56	0	0	41	16	28.07	-	-	-	T	105205803	C	T	105205803	4	4	7	1	0	0	0	0	0	1	0	0	13462	528	19	1	2016	1	RINT1	7	105205803	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2472835	105205803	53932860	76	286										
MLL3	0	genome.wustl.edu	37	chr7	151960110	151960110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aaacaacttactttgcatttCcagccattggttggtactga	7	9	0	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	151960110	151960110	C	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.1290	p.W430C	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	40	0	0	48	6	10.91	-	-	-	G	151960110	C	G	151960110	3	3	7	1	0	0	0	0	1	0	0	0	9693	856	30	2	13649	2	MLL3	7	151960110	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	46754307	151960110	7178553	77	287										
ACTR3B	0	genome.wustl.edu	37	chr7	152497655	152497655	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcaaaggtagttgaccaagCtcaaaggagagtgttgaggg	15	5	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	152497655	152497655	C	G	SNP	ACTR3B	ENST00000256001	human	ensembl	69_37n	1	known	missense	c.140	p.A47G	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR3B	HGNC	ENSG00000133627	61	0	0	50	15	23.08	-	-	-	G	152497655	C	G	152497655	3	3	7	1	0	0	0	0	1	0	0	0	213	797	28	4	150	4	ACTR3B	7	152497655	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	537545	152497655	6641008	78	288										
RNF32	0	genome.wustl.edu	37	chr7	156450902	156450902	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aaccagtatcaaacccgagtGatacacgatggggcccgcct	10	13	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	7	156450902	156450902	G	A	SNP	RNF32	ENST00000317955	human	ensembl	69_37n	1	known	silent	c.531	p.V177	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982	36	0	0	35	14	28.57	-	-	-	A	156450902	G	A	156450902	2	1	7	1	0	0	0	0	0	0	0	1	13574	1277	45	2		2	RNF32	7	156450902	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3953247	156450902	2687761	79	289										
FDFT1	0	genome.wustl.edu	37	chr8	11660352	11660352	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgcgccaggatggagttcgTgaaatgccttggccaccccg	13	13	0	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	8	11660352	11660352	T	C	SNP	FDFT1	ENST00000220584	human	ensembl	69_37n	1	known	missense	c.11	p.V4A	1.000	NULL	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	-	no_errors	FDFT1	HGNC	ENSG00000079459	9	0	0	14	4	22.22	-	-	-	C	11660352	T	C	11660352	3	2	7	1	0	0	0	0	1	0	0	0	5848	1696	59	5	13	5	FDFT1	8	11660352	Missense_Mutation	SNP	T	TCGA-A1-A0SI-01A-11D-A142-09		11660352	134703670	80	290										
TEX15	0	genome.wustl.edu	37	chr8	30694361	30694361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggcacaaatcgattaggaaGgtaagggtatgtagcttgtg	14	4	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	8	30694361	30694361	G	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.8290	p.L2764F	0.022	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	48	0	0	27	15	35.71	-	-	-	A	30694361	G	A	30694361	3	1	7	1	0	0	0	0	1	0	0	0	15874	1000	35	4	87	4	TEX15	8	30694361	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	19034009	30694361	115669661	81	291										
RUNX1T1	0	genome.wustl.edu	37	chr8	93088269	93088269	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gctctccaagtgtttcttttGacagatatcattctccacca	5	12	4	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	8	93088269	93088269	G	A	SNP	RUNX1T1	ENST00000265814	human	ensembl	69_37n	-1	known	silent	c.12	p.V4	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	42	0	0	54	15	21.74	-	-	-	A	93088269	G	A	93088269	2	1	7	1	0	0	0	0	0	0	0	1	13833	1277	45	2		2	RUNX1T1	8	93088269	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	62393908	93088269	53275753	82	292										
DPY19L4	0	genome.wustl.edu	37	chr8	95738635	95738635	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tctgccaaagaagagaaaatCagtgacattccaattcctga	7	9	2	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	8	95738635	95738635	C	G	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	1	known	missense	c.93	p.I31M	0.243	NULL	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162	44	0	0	33	4	10.26	-	-	-	G	95738635	C	G	95738635	3	3	7	1	0	0	0	0	1	0	0	0	4778	816	29	2	99	2	DPY19L4	8	95738635	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2650366	95738635	50625387	83	293										
EXOSC4	0	genome.wustl.edu	37	chr8	145133638	145133638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggcggccgggcagcatggcgGggctggagctcttgtcggac	20	11	1	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	8	145133638	145133638	G	A	SNP	EXOSC4	ENST00000316052	human	ensembl	69_37n	1	known	missense	c.7	p.G3R	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC4	HGNC	ENSG00000178896	9	0	0	15	9	37.5	-	-	-	A	145133638	G	A	145133638	3	1	7	1	0	0	0	0	1	0	0	0	5353	1232	43	4	9	4	EXOSC4	8	145133638	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	49395003	145133638	1230384	84	294										
MLANA	0	genome.wustl.edu	37	chr9	5897575	5897575	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agggccgctgggatcggcatCctgacagtgatcctgggagt	16	10	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	5897575	5897575	C	T	SNP	MLANA	ENST00000381471	human	ensembl	69_37n	1	known	silent	c.96	p.I32	1.000	NULL	NULL	-	no_errors	MLANA	HGNC	ENSG00000120215	51	0	0	32	14	30.43	-	-	-	T	5897575	C	T	5897575	2	4	7	1	0	0	0	0	0	0	0	1	9682	845	30	2		2	MLANA	9	5897575	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		5897575	135315856	85	295										
TAF1L	0	genome.wustl.edu	37	chr9	32632175	32632175	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctcccattcacgtgacagctGagagctggttttcttgttct	9	11	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	32632175	32632175	G	C	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3403	p.Q1135E	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	84	0	0	46	23	33.33	-	-	-	C	32632175	G	C	32632175	3	2	7	1	0	0	0	0	1	0	0	0	15615	1299	45	2	2081	2	TAF1L	9	32632175	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	26734600	32632175	108581256	86	296										
CNTFR	0	genome.wustl.edu	37	chr9	34552694	34552694	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcagcctgggcctccgtggtGaggtgtcgcggttcctcagt	16	12	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	34552694	34552694	G	C	SNP	CNTFR	ENST00000351266	human	ensembl	69_37n	-1	known	silent	c.927	p.L309	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTFR	HGNC	ENSG00000122756	31	0	0	35	5	12.5	-	-	-	C	34552694	G	C	34552694	2	2	7	1	0	0	0	0	0	0	0	1	3668	1277	45	2		2	CNTFR	9	34552694	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1920519	34552694	106660737	87	297										
SPAG8	0	genome.wustl.edu	37	chr9	35811635	35811635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gagctagagcctggaacaggGccaggattagaactatggtc	14	8	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	35811635	35811635	G	A	SNP	SPAG8	ENST00000497810	human	ensembl	69_37n	-1	putative	missense	c.401	p.A134V	0.000	NULL	prints_Antifreeze_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPAG8	HGNC	ENSG00000137098	24	0	0	15	7	31.82	-	-	-	A	35811635	G	A	35811635	3	1	7	1	0	0	0	0	1	0	0	0	15075	1190	42	4	1324	4	SPAG8	9	35811635	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1258941	35811635	105401796	88	298										
AUH	0	genome.wustl.edu	37	chr9	94087618	94087618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	accaatatcgttaatcactgCtcttattttggagacaaaag	6	8	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	94087618	94087618	C	T	SNP	AUH	ENST00000375731	human	ensembl	69_37n	-1	known	missense	c.487	p.A163T	1.000	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	AUH	HGNC	ENSG00000148090	52	0	0	48	13	21.31	-	-	-	T	94087618	C	T	94087618	3	4	7	1	0	0	0	0	1	0	0	0	1223	797	28	4	560	4	AUH	9	94087618	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	58275983	94087618	47125813	89	299										
FAM22G	0	genome.wustl.edu	37	chr9	99694157	99694157	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agccggccctctggtgctctCtgccttccccagcacccctc	8	21	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	99694157	99694157	C	G	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	missense	c.170	p.S57C	0.001	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	19	0	0	17	4	19.05	-	-	-	G	99694157	C	G	99694157	3	3	7	1	0	0	0	0	1	0	0	0	5588	913	32	2	176	2	FAM22G	9	99694157	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	5606539	99694157	41519274	90	300										
DFNB31	0	genome.wustl.edu	37	chr9	117187341	117187341	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acatctccagttgtgcatttGagcagatcaaatgggcgtgg	12	8	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	117187341	117187341	G	C	SNP	DFNB31	ENST00000374059	human	ensembl	69_37n	-1	known	nonsense	c.77	p.S26*	0.018	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	25	0	0	26	5	16.13	-	-	-	C	117187341	G	C	117187341	4	2	7	1	0	0	0	0	0	1	0	0	4491	1305	45	2		2	DFNB31	9	117187341	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	17493184	117187341	24026090	91	301										
GTF3C5	0	genome.wustl.edu	37	chr9	135917590	135917590	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgctgctccgcatcaggaaGagaacgaggcggcagaaagg	15	10	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	9	135917590	135917590	G	A	SNP	GTF3C5	ENST00000372108	human	ensembl	69_37n	1	known	silent	c.270	p.K90	0.966	pfam_TF_IIIC_su-5	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308	27	0	0	15	5	25	-	-	-	A	135917590	G	A	135917590	2	1	7	1	0	0	0	0	0	0	0	1	6927	933	33	2		2	GTF3C5	9	135917590	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	18730249	135917590	5295841	92	302										
AKR1C1	0	genome.wustl.edu	37	chr10	5011086	5011086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acttcaaccgcaggcagctgGagatgatcctcaacaagcca	9	13	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	5011086	5011086	G	C	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	1	known	missense	c.520	p.E174Q	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	83	0	0	62	15	19.48	-	-	-	C	5011086	G	C	5011086	3	2	7	1	0	0	0	0	1	0	0	0	469	1175	41	2	538	2	AKR1C1	10	5011086	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		5011086	130523661	93	303										
FAM171A1	0	genome.wustl.edu	37	chr10	15255759	15255759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcctgtagtctttctatctCaagctgctgatcagccggga	10	11	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	15255759	15255759	C	T	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.1828	p.E610K	0.998	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	16	0	0	17	15	46.88	-	-	-	T	15255759	C	T	15255759	3	4	7	1	0	0	0	0	1	0	0	0	5530	835	29	2	848	2	FAM171A1	10	15255759	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	10244673	15255759	120278988	94	304										
CDH23	0	genome.wustl.edu	37	chr10	73563078	73563078	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gatggtggagagcccccactCtggggcaccaccatgctcct	12	15	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	73563078	73563078	C	G	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	silent	c.7782	p.L2594	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	18	0	0	19	7	26.92	-	-	-	G	73563078	C	G	73563078	2	3	7	1	0	0	0	0	0	0	0	1	3137	900	32	2		2	CDH23	10	73563078	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	58307319	73563078	61971669	95	305										
ZNF518A	0	genome.wustl.edu	37	chr10	97918159	97918159	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggcaggagagctcaaaaccaGatagcctattagcatctatt	9	9	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	97918159	97918159	G	A	SNP	ZNF518A	ENST00000316045	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	16	0	0	15	10	40	-	-	-	A	97918159	G	A	97918159	1	1	7	0	1	0	0	0	0	0	0	0	18058	942	33	2		2	ZNF518A	10	97918159	RNA	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	24355081	97918159	37616588	96	306										
ELOVL3	0	genome.wustl.edu	37	chr10	103987420	103987420	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tagccctgatctacctggttCtcatcgctgtggggcagaac	11	12	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	103987420	103987420	C	G	SNP	ELOVL3	ENST00000370005	human	ensembl	69_37n	1	known	missense	c.139	p.L47V	0.790	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL3	HGNC	ENSG00000119915	40	0	0	59	19	24.36	-	-	-	G	103987420	C	G	103987420	3	3	7	1	0	0	0	0	1	0	0	0	5112	913	32	2	145	2	ELOVL3	10	103987420	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	6069261	103987420	31547327	97	307										
C10orf118	0	genome.wustl.edu	37	chr10	115910964	115910964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aacttctttattaagttcttCtattcttgattctaactgta	3	7	5	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	115910964	115910964	C	G	SNP	C10orf118	ENST00000369287	human	ensembl	69_37n	-1	known	missense	c.775	p.E259Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813	56	0	0	64	13	16.88	-	-	-	G	115910964	C	G	115910964	3	3	7	1	0	0	0	0	1	0	0	0	1597	922	32	2	1973	2	C10orf118	10	115910964	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	11923544	115910964	19623783	98	308										
FAM24A	0	genome.wustl.edu	37	chr10	124671228	124671228	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctggttgccgcgatggtgctCctaagtgttgtgttctgtct	13	9	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	124671228	124671228	C	G	SNP	FAM24A	ENST00000368894	human	ensembl	69_37n	1	known	silent	c.78	p.L26	0.006	NULL	NULL	-	no_errors	FAM24A	HGNC	ENSG00000203795	72	0	0	73	18	19.78	-	-	-	G	124671228	C	G	124671228	2	3	7	1	0	0	0	0	0	0	0	1	5590	842	30	2		2	FAM24A	10	124671228	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	8760264	124671228	10863519	99	309										
IKZF5	0	genome.wustl.edu	37	chr10	124753897	124753897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggagtcagtctggatatttGggatttcgtgggtaaaatcg	14	4	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	10	124753897	124753897	G	C	SNP	IKZF5	ENST00000368886	human	ensembl	69_37n	-1	known	missense	c.659	p.P220R	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574	67	0	0	38	14	26.92	-	-	-	C	124753897	G	C	124753897	3	2	7	1	0	0	0	0	1	0	0	0	7672	1348	47	4	604	4	IKZF5	10	124753897	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	82669	124753897	10780850	100	310										
PHRF1	0	genome.wustl.edu	37	chr11	608991	608991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cacgggagcacaggcggcctCggtcccgtgagaagtggccg	17	13	0	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	608991	608991	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	missense	c.3535	p.R1179W	0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	8	0	0	8	4	33.33	-	-	-	T	608991	C	T	608991	3	4	7	1	0	0	0	0	1	0	0	0	11935	875	31	1	3582	1	PHRF1	11	608991	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		608991	134397525	101	311										
SYT9	0	genome.wustl.edu	37	chr11	7324494	7324494	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atcctcccacgccctgccctGactcctccatgaagatcagc	6	19	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	7324494	7324494	G	T	SNP	SYT9	ENST00000318881	human	ensembl	69_37n	1	known	missense	c.370	p.D124Y	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743	36	0	0	21	8	27.59	-	-	-	T	7324494	G	T	7324494	3	4	7	1	0	0	0	0	1	0	0	0	15573	1290	45	2	376	2	SYT9	11	7324494	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	6715503	7324494	127682022	102	312										
QSER1	0	genome.wustl.edu	37	chr11	32956104	32956104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccaagtcatgaagtccaggaGcaaagttctggcccattcaa	9	11	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	32956104	32956104	G	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2913	p.E971D	0.897	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	29	0	0	12	9	42.86	-	-	-	T	32956104	G	T	32956104	3	4	7	1	0	0	0	0	1	0	0	0	12965	962	34	4	2919	4	QSER1	11	32956104	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	25631610	32956104	102050412	103	313										
OR1S1	0	genome.wustl.edu	37	chr11	57982600	57982600	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gtcattgacaatttgctcttGgggaccatggcctatgacca	10	10	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	57982600	57982600	G	A	SNP	OR1S1	ENST00000309433	human	ensembl	69_37n	1	known	silent	c.384	p.L128	0.012	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774	79	0	0	64	18	21.95	-	-	-	A	57982600	G	A	57982600	2	1	7	1	0	0	0	0	0	0	0	1	11045	1339	47	4		4	OR1S1	11	57982600	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	25026496	57982600	77023916	104	314										
AHNAK	0	genome.wustl.edu	37	chr11	62285191	62285191	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaaacatccgcacctcctttGatttttgggcccttcaagtt	7	12	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	62285191	62285191	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.16698	p.I5566	0.987	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	29	0	0	22	5	18.52	-	-	-	A	62285191	G	A	62285191	2	1	7	1	0	0	0	0	0	0	0	1	414	1280	45	2		2	AHNAK	11	62285191	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	4302591	62285191	72721325	105	315										
NXF1	0	genome.wustl.edu	37	chr11	62564681	62564681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggaagtgcaagaccagactCttcaagttttctgttccaaa	8	9	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	62564681	62564681	C	G	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.1152	p.K384N	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	28	0	0	11	9	45	-	-	-	G	62564681	C	G	62564681	3	3	7	1	0	0	0	0	1	0	0	0	10855	912	32	2	743	2	NXF1	11	62564681	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	279490	62564681	72441835	106	316										
PDE2A	0	genome.wustl.edu	37	chr11	72295773	72295773	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gggatgcggatctcatagctCtgccggagcagagatggagt	16	8	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	72295773	72295773	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	splice_site	c.1360-1	e18-1	1.000	-	-	-	no_errors	PDE2A	HGNC	ENSG00000186642	39	0	0	41	6	12.77	-	-	-	T	72295773	C	T	72295773	5	4	7	1	0	0	0	0	0	0	1	0	11709	927	32	2	1522	2	PDE2A	11	72295773	Splice_Site	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	9731092	72295773	62710743	107	317										
C11orf30	0	genome.wustl.edu	37	chr11	76257017	76257017	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acagcagtgtctgacattttGaaaatgtctttgatggaagc	10	6	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	76257017	76257017	G	C	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.3450	p.L1150F	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	36	0	0	25	5	16.67	-	-	-	C	76257017	G	C	76257017	3	2	7	1	0	0	0	0	1	0	0	0	1647	1281	45	2	3524	2	C11orf30	11	76257017	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3961244	76257017	58749499	108	318										
C11orf82	0	genome.wustl.edu	37	chr11	82643268	82643268	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gatcccattcaggattcatgGagccttgtttcatatatgga	9	8	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	82643268	82643268	G	A	SNP	C11orf82	ENST00000430323	human	ensembl	69_37n	1	known	nonsense	c.888	p.W296*	0.005	NULL	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	-	no_errors	C11orf82	HGNC	ENSG00000165490	22	0	0	17	9	34.62	-	-	-	A	82643268	G	A	82643268	4	1	7	1	0	0	0	0	0	1	0	0	1676	1183	41	2	902	2	C11orf82	11	82643268	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	6386251	82643268	52363248	109	319										
NCAM1	0	genome.wustl.edu	37	chr11	113076802	113076802	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tccaacaactacctgcagatCcggggcatcaagaaaacaga	8	12	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	113076802	113076802	C	T	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	silent	c.498	p.I166	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	34	0	0	45	9	16.67	-	-	-	T	113076802	C	T	113076802	2	4	7	1	0	0	0	0	0	0	0	1	10274	845	30	2		2	NCAM1	11	113076802	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	30433534	113076802	21929714	110	320										
SIDT2	0	genome.wustl.edu	37	chr11	117062717	117062717	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggccattgtcatcttcttctCtgtgctgggcgtggtgaggg	15	9	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	117062717	117062717	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.1922	p.S641F	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	49	0	0	41	13	24.07	-	-	-	T	117062717	C	T	117062717	3	4	7	1	0	0	0	0	1	0	0	0	14392	913	32	2	1933	2	SIDT2	11	117062717	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	3985915	117062717	17943799	111	321										
C1QTNF5	0	genome.wustl.edu	37	chr11	119215369	119215369	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cttggcactgcaattggtctCatcactgccgtcagcacagt	9	13	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	119215369	119215369	C	T	SNP	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	missense	c.871	p.E291K	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	21	0	0	37	19	33.93	-	-	-	T	119215369	C	T	119215369	3	4	7	1	0	0	0	0	1	0	0	0	1985	835	29	2		2	C1QTNF5	11	119215369	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2152652	119215369	15791147	112	322										
CRTAM	0	genome.wustl.edu	37	chr11	122709265	122709265	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acagcacagtatgtggtggaGagttctcagcttgctggcat	13	8	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	11	122709265	122709265	G	C	SNP	CRTAM	ENST00000227348	human	ensembl	69_37n	1	known	missense	c.11	p.R4T	0.005	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CRTAM	HGNC	ENSG00000109943	74	0	0	73	15	17.05	-	-	-	C	122709265	G	C	122709265	3	2	7	1	0	0	0	0	1	0	0	0	3927	942	33	2	13	2	CRTAM	11	122709265	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3493896	122709265	12297251	113	323										
ANO2	0	genome.wustl.edu	37	chr12	5848485	5848485	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atacgtgagagaactcacttCttcctcttctatgccagtca	6	12	5	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	5848485	5848485	C	G	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475Q	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	36	0	0	24	10	29.41	-	-	-	G	5848485	C	G	5848485	3	3	7	1	0	0	0	0	1	0	0	0	696	922	32	2	1632	2	ANO2	12	5848485	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		5848485	128003410	114	324										
KIF21A	0	genome.wustl.edu	37	chr12	39716479	39716479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gccaaacttacatgctgcctAtcttagaaggtaagccaggt	9	10	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	39716479	39716479	A	G	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	missense	c.3662	p.I1221T	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	25	0	0	24	5	17.24	-	-	-	G	39716479	A	G	39716479	3	3	7	1	0	0	0	0	1	0	0	0	8340	449	16	5	1410	5	KIF21A	12	39716479	Missense_Mutation	SNP	A	TCGA-A1-A0SI-01A-11D-A142-09	33867994	39716479	94135416	115	325										
KRT84	0	genome.wustl.edu	37	chr12	52775231	52775231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gacctcagcaatgatcccatCaaggttcaggtcacggctgt	10	12	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	52775231	52775231	C	G	SNP	KRT84	ENST00000257951	human	ensembl	69_37n	-1	known	missense	c.991	p.D331H	0.995	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849	39	0	0	34	12	26.09	-	-	-	G	52775231	C	G	52775231	3	3	7	1	0	0	0	0	1	0	0	0	8551	826	29	2	831	2	KRT84	12	52775231	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	13058752	52775231	81076664	116	326										
XPOT	0	genome.wustl.edu	37	chr12	64825441	64825441	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cccttacaaaaggatattctCagaagtggagtccgtacttt	8	9	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	64825441	64825441	C	G	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	silent	c.2100	p.L700	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	64	0	0	61	22	26.51	-	-	-	G	64825441	C	G	64825441	2	3	7	1	0	0	0	0	0	0	0	1	17547	813	29	2		2	XPOT	12	64825441	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	12050210	64825441	69026454	117	327										
GRIP1	0	genome.wustl.edu	37	chr12	66800072	66800072	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gctctcaatacctgaattatCttcatctttgcggattttga	6	9	4	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	66800072	66800072	C	G	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	missense	c.1975	p.D659H	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	46	0	0	45	10	18.18	-	-	-	G	66800072	C	G	66800072	3	3	7	1	0	0	0	0	1	0	0	0	6838	913	32	2	1451	2	GRIP1	12	66800072	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	1974631	66800072	67051823	118	328										
HSP90B1	0	genome.wustl.edu	37	chr12	104337515	104337515	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gacttgatttctttccctaaGattgaaaaggctgtggtgtc	10	7	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	104337515	104337515	G	C	SNP	HSP90B1	ENST00000299767	human	ensembl	69_37n	1	known	splice_site	c.1891-1	e14-1	1.000	-	-	-	no_errors	HSP90B1	HGNC	ENSG00000166598	32	0	0	37	12	24.49	-	-	-	C	104337515	G	C	104337515	5	2	7	1	0	0	0	0	0	0	1	0	7456	956	33	2	1944	2	HSP90B1	12	104337515	Splice_Site	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	37537443	104337515	29514380	119	329										
VSIG10	0	genome.wustl.edu	37	chr12	118511688	118511688	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcgggctgggtaaggttcctCagccacaggatcttggcagg	15	10	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	118511688	118511688	C	T	SNP	VSIG10	ENST00000359236	human	ensembl	69_37n	-1	known	silent	c.1035	p.L345	0.998	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG10	HGNC	ENSG00000176834	30	0	0	24	7	22.58	-	-	-	T	118511688	C	T	118511688	2	4	7	1	0	0	0	0	0	0	0	1	17320	813	29	2		2	VSIG10	12	118511688	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	14174173	118511688	15340207	120	330										
SUDS3	0	genome.wustl.edu	37	chr12	118852239	118852239	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gccggcgctcagctgcttgaCtttctacagtgctcttctct	9	14	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	12	118852239	118852239	C	G	SNP	SUDS3	ENST00000541591	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.798	-	-	-	no_errors	SUDS3	HGNC	ENSG00000111707	17	0	0	31	10	24.39	-	-	-	G	118852239	C	G	118852239	1	3	7	0	1	0	0	0	0	0	0	0	15458	580	20	4		4	SUDS3	12	118852239	RNA	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	340551	118852239	14999656	121	331										
PARP4	0	genome.wustl.edu	37	chr13	25021263	25021263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcacatctggattgagttgcTgccatttgacggagacagag	13	8	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	13	25021263	25021263	T	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3176	p.Q1059R	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	29	0	0	22	8	26.67	-	-	-	C	25021263	T	C	25021263	3	2	7	1	0	0	0	0	1	0	0	0	11536	1580	55	5	2034	5	PARP4	13	25021263	Missense_Mutation	SNP	T	TCGA-A1-A0SI-01A-11D-A142-09		25021263	90148615	122	332										
ATP8A2	0	genome.wustl.edu	37	chr13	26155956	26155956	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaggatattttttcaatgtaGaatttgctgctacttggagc	10	5	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	13	26155956	26155956	G	C	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	splice_site	c.2008-1	e23-1	1.000	-	-	-	no_errors	ATP8A2	HGNC	ENSG00000132932	26	0	0	16	9	36	-	-	-	C	26155956	G	C	26155956	5	2	7	1	0	0	0	0	0	0	1	0	1197	956	33	2	2097	2	ATP8A2	13	26155956	Splice_Site	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1134693	26155956	89013922	123	333										
RB1	0	genome.wustl.edu	37	chr13	48941691	48941691	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aaataaagatctagatgcaaGattatttttggatcatgata	7	3	2	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	13	48941691	48941691	G	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	missense	c.1001	p.R334K	1.000	NULL	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	23	0	0	10	7	41.18	-	-	-	A	48941691	G	A	48941691	3	1	7	1	0	0	0	0	1	0	0	0	13181	942	33	2	1039	2	RB1	13	48941691	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	22785735	48941691	66228187	124	334										
RB1	0	genome.wustl.edu	37	chr13	49039501	49039501	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aacaaaaatgactccaagatCaaggtgtgtgttttctcttt	7	7	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	13	49039501	49039501	C	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.2486	p.S829*	1.000	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	48	0	0	40	10	20	-	-	-	G	49039501	C	G	49039501	4	3	7	1	0	0	0	0	0	1	0	0	13181	838	29	2	2576	2	RB1	13	49039501	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	97810	49039501	66130377	125	335										
ERCC5	0	genome.wustl.edu	37	chr13	103510687	103510687	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gaggacttcagcagcctgccCcctgaagtaaagcatgaaat	10	11	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	13	103510687	103510687	C	T	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	silent	c.591	p.P197	0.066	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	40	0	0	16	11	40.74	-	-	-	T	103510687	C	T	103510687	2	4	7	1	0	0	0	0	0	0	0	1	5253	610	22	4		4	ERCC5	13	103510687	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	54471186	103510687	11659191	126	336										
TMX1	0	genome.wustl.edu	37	chr14	51707049	51707049	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cttgcagttcccctggcagtCctggtgctgttgctttgggg	14	11	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	51707049	51707049	C	G	SNP	TMX1	ENST00000457354	human	ensembl	69_37n	1	known	silent	c.39	p.V13	0.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX1	HGNC	ENSG00000139921	32	0	0	24	7	22.58	-	-	-	G	51707049	C	G	51707049	2	3	7	1	0	0	0	0	0	0	0	1	16361	842	30	2		2	TMX1	14	51707049	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		51707049	55642491	127	337										
SIX4	0	genome.wustl.edu	37	chr14	61186663	61186663	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccactgtttgaatgccttctCttttcacctcagtgctgggt	8	12	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	61186663	61186663	C	G	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455T	0.996	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	47	0	0	48	13	21.31	-	-	-	G	61186663	C	G	61186663	3	3	7	1	0	0	0	0	1	0	0	0	14438	913	32	2	989	2	SIX4	14	61186663	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	9479614	61186663	46162877	128	338										
PLEKHH1	0	genome.wustl.edu	37	chr14	68029300	68029300	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccctaccaaaggtgcgggctCctggcaccccgcgggacagc	13	17	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	68029300	68029300	C	A	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	missense	c.952	p.P318T	0.901	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	20	0	0	15	9	37.5	-	-	-	A	68029300	C	A	68029300	3	1	7	1	0	0	0	0	1	0	0	0	12150	855	30	2	974	2	PLEKHH1	14	68029300	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	6842637	68029300	39320240	129	339										
SLC8A3	0	genome.wustl.edu	37	chr14	70633483	70633483	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccgggcacctgatgtccgcaGaaccttgacctccataacac	8	16	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	70633483	70633483	G	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	silent	c.1657	p.L553	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	33	0	0	25	5	16.67	-	-	-	A	70633483	G	A	70633483	2	1	7	1	0	0	0	0	0	0	0	1	14797	933	33	2		2	SLC8A3	14	70633483	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	2604183	70633483	36716057	130	340										
YLPM1	0	genome.wustl.edu	37	chr14	75285000	75285000	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atattcgttctttgctgcaaGatgctgctattgaagaggtg	11	6	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	75285000	75285000	G	T	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.6013	p.D2005Y	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	50	0	0	47	8	14.55	-	-	-	T	75285000	G	T	75285000	3	4	7	1	0	0	0	0	1	0	0	0	17583	942	33	2	6075	2	YLPM1	14	75285000	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	4651517	75285000	32064540	131	341										
DLST	0	genome.wustl.edu	37	chr14	75355833	75355833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cttcagtgttcgctttttcaGaactacagctgtatgcagta	8	9	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	75355833	75355833	G	A	SNP	DLST	ENST00000334220	human	ensembl	69_37n	1	known	missense	c.182	p.R61K	1.000	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	-	no_errors	DLST	HGNC	ENSG00000119689	97	0	0	94	17	15.32	-	-	-	A	75355833	G	A	75355833	3	1	7	1	0	0	0	0	1	0	0	0	4605	942	33	2	196	2	DLST	14	75355833	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	70833	75355833	31993707	132	342										
DLST	0	genome.wustl.edu	37	chr14	75356620	75356620	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgttggagacacagttgcaGaagatgaagtggtttgtgag	15	4	0	5			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	14	75356620	75356620	G	A	SNP	DLST	ENST00000334220	human	ensembl	69_37n	1	known	missense	c.295	p.E99K	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	-	no_errors	DLST	HGNC	ENSG00000119689	79	0	0	57	18	24	-	-	-	A	75356620	G	A	75356620	3	1	7	1	0	0	0	0	1	0	0	0	4605	943	33	2	317	2	DLST	14	75356620	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	787	75356620	31992920	133	343										
NIPA1	0	genome.wustl.edu	37	chr15	23052645	23052645	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cctgagttgtcacactctcaGactttggggagtggataatc	11	9	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	23052645	23052645	G	A	SNP	NIPA1	ENST00000337435	human	ensembl	69_37n	-1	known	missense	c.428	p.S143F	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113	31	0	0	20	6	23.08	-	-	-	A	23052645	G	A	23052645	3	1	7	1	0	0	0	0	1	0	0	0	10494	942	33	2	569	2	NIPA1	15	23052645	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		23052645	79478747	134	344										
HERC2	0	genome.wustl.edu	37	chr15	28408363	28408363	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acacgagtgtcatccgcaatCagcagactggtgaactcatc	9	12	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	28408363	28408363	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.10623	p.L3541	0.965	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	28	0	0	19	6	24	-	-	-	T	28408363	C	T	28408363	2	4	7	1	0	0	0	0	0	0	0	1	7109	813	29	2		2	HERC2	15	28408363	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	5355718	28408363	74123029	135	345										
HERC2	0	genome.wustl.edu	37	chr15	28474383	28474383	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggcatccatcaaaacatttcGaatgttctgtacagcccaag	7	11	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	28474383	28474383	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	nonsense	c.5230	p.R1744*	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	51	0	0	40	8	16.67	-	-	-	A	28474383	G	A	28474383	4	1	7	1	0	0	0	0	0	1	0	0	7109	1066	37	1	9514	1	HERC2	15	28474383	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	66020	28474383	74057009	136	346										
CCNDBP1	0	genome.wustl.edu	37	chr15	43486649	43486649	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgttttaaagaaggcacttGaaattacaaagtaagtatga	8	4	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	43486649	43486649	G	A	SNP	CCNDBP1	ENST00000300213	human	ensembl	69_37n	1	known	missense	c.958	p.E320K	1.000	NULL	NULL	-	no_errors	CCNDBP1	HGNC	ENSG00000166946	57	0	0	48	16	25	-	-	-	A	43486649	G	A	43486649	3	1	7	1	0	0	0	0	1	0	0	0	2948	1291	45	2	996	2	CCNDBP1	15	43486649	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	15012266	43486649	59044743	137	347										
CCPG1	0	genome.wustl.edu	37	chr15	55669182	55669182	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agaaagtatactggctgctaGaggaagagcccatgttaaag	12	6	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	55669182	55669182	G	C	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.419	p.S140C	0.899	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	41	0	0	18	8	30.77	-	-	-	C	55669182	G	C	55669182	3	2	7	1	0	0	0	0	1	0	0	0	2967	942	33	2	1870	2	CCPG1	15	55669182	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	12182533	55669182	46862210	138	348										
ACAN	0	genome.wustl.edu	37	chr15	89400566	89400566	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agacttcagcttctggagctGaggacctcagtgggttgcct	13	10	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	15	89400566	89400566	G	C	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	missense	c.4750	p.E1584Q	0.483	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	33	0	0	32	10	23.81	-	-	-	C	89400566	G	C	89400566	3	2	7	1	0	0	0	0	1	0	0	0	117	1291	45	2	4792	2	ACAN	15	89400566	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	33731384	89400566	13130826	139	349										
ABAT	0	genome.wustl.edu	37	chr16	8857982	8857982	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cctccggagaactttgtggaGaagctccggcagtccttgct	12	12	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	16	8857982	8857982	G	A	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	silent	c.423	p.E141	0.987	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	24	0	0	38	9	19.15	-	-	-	A	8857982	G	A	8857982	2	1	7	1	0	0	0	0	0	0	0	1	27	933	33	2		2	ABAT	16	8857982	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		8857982	81496771	140	350										
CDH16	0	genome.wustl.edu	37	chr16	66947420	66947420	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgggcttctctgtccagctCtctggtcacgtagaggtttc	11	12	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	16	66947420	66947420	C	G	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	missense	c.877	p.E293Q	0.886	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	39	0	0	25	7	21.88	-	-	-	G	66947420	C	G	66947420	3	3	7	1	0	0	0	0	1	0	0	0	3130	922	32	2	1656	2	CDH16	16	66947420	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	58089438	66947420	23407333	141	351										
ESRP2	0	genome.wustl.edu	37	chr16	68265592	68265592	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gggccggatgcatagcggttCaagacctagtaaggaaggca	15	8	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	16	68265592	68265592	C	G	SNP	ESRP2	ENST00000565858	human	ensembl	69_37n	-1	known	missense	c.1335	p.L445F	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	38	0	0	15	4	21.05	-	-	-	G	68265592	C	G	68265592	3	3	7	1	0	0	0	0	1	0	0	0	5296	825	29	2	868	2	ESRP2	16	68265592	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	1318172	68265592	22089161	142	352										
ZFHX3	0	genome.wustl.edu	37	chr16	72831445	72831445	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	atcatatctgccagtttcttCcgattggcctctttgggctc	8	12	4	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	16	72831445	72831445	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.5136	p.R1712	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	38	0	0	18	16	47.06	-	-	-	T	72831445	C	T	72831445	2	4	7	1	0	0	0	0	0	0	0	1	17730	842	30	2		2	ZFHX3	16	72831445	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	4565853	72831445	17523308	143	353										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	14	7	33.33	-	-	-	T	7578406	C	T	7578406	3	4	7	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		7578406	73616804	144	354										
SLFN13	0	genome.wustl.edu	37	chr17	33768152	33768152	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cttctcttggatactgtgctGagagagggggaaggccactg	15	8	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	33768152	33768152	G	C	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	nonsense	c.2156	p.S719*	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	46	0	0	23	11	32.35	-	-	-	C	33768152	G	C	33768152	4	2	7	1	0	0	0	0	0	1	0	0	14825	1294	45	2	541	2	SLFN13	17	33768152	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	26189746	33768152	47427058	145	355										
TUBG2	0	genome.wustl.edu	37	chr17	40817562	40817562	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cacatccagaacccgtccttCtcccagatcaaccagctggt	6	17	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	40817562	40817562	C	T	SNP	TUBG2	ENST00000251412	human	ensembl	69_37n	1	known	silent	c.675	p.F225	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042	66	0	0	20	14	41.18	-	-	-	T	40817562	C	T	40817562	2	4	7	1	0	0	0	0	0	0	0	1	16862	912	32	2		2	TUBG2	17	40817562	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	7049410	40817562	40377648	146	356										
PLEKHH3	0	genome.wustl.edu	37	chr17	40826429	40826429	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcgtcacttccaggggacccTggggagacaggcggggaagc	18	11	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	40826429	40826429	T	C	SNP	PLEKHH3	ENST00000591022	human	ensembl	69_37n	-1	known	splice_site	c.163-2	e2-2	0.946	-	-	-	no_errors	PLEKHH3	HGNC	ENSG00000068137	13	0	0	6	6	50	-	-	-	C	40826429	T	C	40826429	5	2	7	1	0	0	0	0	0	0	1	0	12152	1594	55	5	2268	5	PLEKHH3	17	40826429	Splice_Site	SNP	T	TCGA-A1-A0SI-01A-11D-A142-09	8867	40826429	40368781	147	357										
BRCA1	0	genome.wustl.edu	37	chr17	41276089	41276089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aatgacattttgtacttcttCaacgcgaagagcagataaat	7	7	2	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	41276089	41276089	C	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.25	p.E9Q	0.967	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	60	0	0	27	10	27.03	-	-	-	G	41276089	C	G	41276089	3	3	7	1	0	0	0	0	1	0	0	0	1506	835	29	2	5724	2	BRCA1	17	41276089	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	449660	41276089	39919121	148	358										
C17orf104	0	genome.wustl.edu	37	chr17	42739711	42739711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gacaatgtagacctaaggcaGacctatactccattttcttc	6	11	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	42739711	42739711	G	A	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	silent	c.231	p.Q77	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	47	0	0	22	18	45	-	-	-	A	42739711	G	A	42739711	2	1	7	1	0	0	0	0	0	0	0	1	1864	933	33	2		2	C17orf104	17	42739711	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1463622	42739711	38455499	149	359										
NFE2L1	0	genome.wustl.edu	37	chr17	46136365	46136365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgagctaccaggatccagctCagctctcatgcctgccctac	8	16	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	46136365	46136365	C	G	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	missense	c.1681	p.Q561E	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	15	0	0	13	15	53.57	-	-	-	G	46136365	C	G	46136365	3	3	7	1	0	0	0	0	1	0	0	0	10439	827	29	2	1699	2	NFE2L1	17	46136365	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	3396654	46136365	35058845	150	360										
ABCA8	0	genome.wustl.edu	37	chr17	66902212	66902212	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	attaattgtagattttccttCtagcttcaggaatacttcat	5	7	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	66902212	66902212	C	G	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.2371	p.E791Q	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	76	0	0	24	39	61.9	-	-	-	G	66902212	C	G	66902212	3	3	7	1	0	0	0	0	1	0	0	0	38	922	32	2	2582	2	ABCA8	17	66902212	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	20765847	66902212	14292998	151	361										
CANT1	0	genome.wustl.edu	37	chr17	76991123	76991123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gcggctggatgccggcagcaGcccgcagggcgttgtagttg	18	11	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	17	76991123	76991123	G	A	SNP	CANT1	ENST00000302345	human	ensembl	69_37n	-1	known	missense	c.812	p.A271V	0.004	pfam_Apyrase,superfamily_Apyrase	pfam_Apyrase,superfamily_Apyrase	-	no_errors	CANT1	HGNC	ENSG00000171302	19	0	0	12	11	47.83	-	-	-	A	76991123	G	A	76991123	3	1	7	1	0	0	0	0	1	0	0	0	2642	971	34	4	401	4	CANT1	17	76991123	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	10088911	76991123	4204087	152	362										
S1PR4	0	genome.wustl.edu	37	chr19	3179900	3179900	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tcccgctcgctcagctttcgGatgcgggagcccctgtccag	12	16	1	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	3179900	3179900	G	A	SNP	S1PR4	ENST00000246115	human	ensembl	69_37n	1	known	silent	c.1110	p.R370	1.000	prints_EDG6_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG6_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR4	HGNC	ENSG00000125910	16	0	0	10	4	28.57	-	-	-	A	3179900	G	A	3179900	2	1	7	1	0	0	0	0	0	0	0	1	13882	1161	41	2		2	S1PR4	19	3179900	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		3179900	55949083	153	363										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10217225	10217225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggcgcagctccgcaacctcGaggcctatgccgcgaacccg	12	17	0	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	10217225	10217225	G	C	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	missense	c.67	p.E23Q	1.000	NULL	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	16	0	0	8	4	33.33	-	-	-	C	10217225	G	C	10217225	3	2	7	1	0	0	0	0	1	0	0	0	12362	1059	37	3	73	3	PPAN-P2RY11	19	10217225	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	7037325	10217225	48911758	154	364										
MAN2B1	0	genome.wustl.edu	37	chr19	12760743	12760743	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ccacctcctctccaggatctCccggccattgctgtctgtgt	8	17	3	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	12760743	12760743	C	A	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	nonsense	c.2251	p.E751*	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	61	0	0	40	24	37.5	-	-	-	A	12760743	C	A	12760743	4	1	7	1	0	0	0	0	0	1	0	0	9287	864	30	2	812	2	MAN2B1	19	12760743	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	2543518	12760743	46368240	155	365										
FAM129C	0	genome.wustl.edu	37	chr19	17654376	17654376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ggcgcagaggaggttcatccGaggctggggtctctgcatct	16	10	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	17654376	17654376	G	A	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.1583	p.R528Q	0.000	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	51	0	0	59	16	21.33	-	-	-	A	17654376	G	A	17654376	3	1	7	1	0	0	0	0	1	0	0	0	5478	1058	37	1	1633	1	FAM129C	19	17654376	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	4893633	17654376	41474607	156	366										
UNC13A	0	genome.wustl.edu	37	chr19	17722612	17722612	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tccccagttcctggatgagtGaacagctcaacatggacaga	10	11	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	17722612	17722612	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	silent	c.4875	p.F1625	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	46	0	0	57	21	26.92	-	-	-	A	17722612	G	A	17722612	2	1	7	1	0	0	0	0	0	0	0	1	17081	1281	45	2		2	UNC13A	19	17722612	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	68236	17722612	41406371	157	367										
APLP1	0	genome.wustl.edu	37	chr19	36362821	36362821	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agggggctgaggacgaggaaGaggaggaatccttcccacag	17	8	0	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	36362821	36362821	G	A	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	missense	c.733	p.E245K	1.000	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	15	0	0	10	5	33.33	-	-	-	A	36362821	G	A	36362821	3	1	7	1	0	0	0	0	1	0	0	0	780	943	33	2	755	2	APLP1	19	36362821	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	18640209	36362821	22766162	158	368										
ZNF790	0	genome.wustl.edu	37	chr19	37310624	37310624	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aataacttctgaatcaggaaGaaaggtattcccacattctt	6	8	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	37310624	37310624	G	A	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.622	p.L208F	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	43	0	0	43	10	18.87	-	-	-	A	37310624	G	A	37310624	3	1	7	1	0	0	0	0	1	0	0	0	18255	942	33	2	1292	2	ZNF790	19	37310624	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	947803	37310624	21818359	159	369										
ZNF345	0	genome.wustl.edu	37	chr19	37368402	37368402	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttactcaacatcggcggattCatactggtgagaaaccttat	8	9	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	37368402	37368402	C	T	SNP	ZNF345	ENST00000420450	human	ensembl	69_37n	1	known	missense	c.670	p.H224Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247	45	0	0	40	9	18.37	-	-	-	T	37368402	C	T	37368402	3	4	7	1	0	0	0	0	1	0	0	0	17955	826	29	2	672	2	ZNF345	19	37368402	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	57778	37368402	21760581	160	370										
AKT2	0	genome.wustl.edu	37	chr19	40742257	40742257	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aggccaaagtcagtgatcttGatgtggccatctttgtccag	11	9	3	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	40742257	40742257	G	C	SNP	AKT2	ENST00000578310	human	ensembl	69_37n	-1	putative	nonsense	c.110	p.S37*	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AKT2	HGNC	ENSG00000105221	27	0	0	22	4	15.38	-	-	-	C	40742257	G	C	40742257	4	2	7	1	0	0	0	0	0	1	0	0	480	1280	45	2	598	2	AKT2	19	40742257	Nonsense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3373855	40742257	18386726	161	371										
ZNF227	0	genome.wustl.edu	37	chr19	44740536	44740536	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tctggtcttcaatcccatcaGagagtccacacgggggaaaa	10	11	4	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	44740536	44740536	G	A	SNP	ZNF227	ENST00000313040	human	ensembl	69_37n	1	known	silent	c.1953	p.Q651	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115	49	0	0	36	16	30.77	-	-	-	A	44740536	G	A	44740536	2	1	7	1	0	0	0	0	0	0	0	1	17877	933	33	2		2	ZNF227	19	44740536	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	3998279	44740536	14388447	162	372										
KLK8	0	genome.wustl.edu	37	chr19	51499359	51499359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cttgatccagtccaggtagcGgcagatgttggtatagacgc	13	9	0	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	51499359	51499359	G	A	SNP	KLK8	ENST00000391806	human	ensembl	69_37n	-1	known	missense	c.874	p.R292C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455	35	0	0	38	19	33.33	-	-	-	A	51499359	G	A	51499359	3	1	7	1	0	0	0	0	1	0	0	0	8463	1116	39	1	47	1	KLK8	19	51499359	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	6758823	51499359	7629624	163	373										
SIGLEC6	0	genome.wustl.edu	37	chr19	52034562	52034562	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgggatcccagaggaggtgGaatcggccccgggtctcctc	15	13	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	52034562	52034562	G	C	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	missense	c.279	p.F93L	0.001	pfam_Ig_V-set,smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	41	0	0	38	8	17.39	-	-	-	C	52034562	G	C	52034562	3	2	7	1	0	0	0	0	1	0	0	0	14401	1165	41	2	1143	2	SIGLEC6	19	52034562	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	535203	52034562	7094421	164	374										
ZNF701	0	genome.wustl.edu	37	chr19	53079190	53079190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tggccatagaattctctcagGaggagtggaaatgcctggac	13	8	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	53079190	53079190	G	A	SNP	ZNF701	ENST00000301093	human	ensembl	69_37n	1	known	missense	c.256	p.E86K	0.310	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	30	0	0	23	4	14.81	-	-	-	A	53079190	G	A	53079190	3	1	7	1	0	0	0	0	1	0	0	0	18201	1175	41	2	266	2	ZNF701	19	53079190	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1044628	53079190	6049793	165	375										
ZNF419	0	genome.wustl.edu	37	chr19	58005018	58005018	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttatcaaacattggcgtgttCatactggagaaaggccttac	9	8	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	58005018	58005018	C	G	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	1	known	missense	c.1096	p.H366D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	42	0	0	28	14	33.33	-	-	-	G	58005018	C	G	58005018	3	3	7	1	0	0	0	0	1	0	0	0	17992	826	29	2	1114	2	ZNF419	19	58005018	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	4925828	58005018	1123965	166	376										
ZNF154	0	genome.wustl.edu	37	chr19	58213789	58213789	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgaagtctccaatggtcattGagactgtagcttttgctaaa	9	7	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	19	58213789	58213789	G	A	SNP	ZNF154	ENST00000426889	human	ensembl	69_37n	-1	known	silent	c.528	p.L176	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF154	HGNC	ENSG00000179909	48	0	0	54	11	16.92	-	-	-	A	58213789	G	A	58213789	2	1	7	1	0	0	0	0	0	0	0	1	17831	1277	45	2		2	ZNF154	19	58213789	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	208771	58213789	915194	167	377										
PLCG1	0	genome.wustl.edu	37	chr20	39791131	39791131	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aagaacatgctgtcccaggtCaactaccgggtccccaacat	8	14	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	20	39791131	39791131	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	silent	c.552	p.V184	1.000	pirsf_PLC-gamma,pfscan_EF_HAND_2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	28	0	0	26	14	35	-	-	-	T	39791131	C	T	39791131	2	4	7	1	0	0	0	0	0	0	0	1	12109	813	29	2		2	PLCG1	20	39791131	Silent	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09		39791131	23234389	168	378										
PTPRT	0	genome.wustl.edu	37	chr20	40790028	40790028	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	aacccgtagccctggcctctCttcatctgcgtgatgtgctg	10	14	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	20	40790028	40790028	C	G	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.2712	p.K904N	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	26	0	0	21	18	46.15	-	-	-	G	40790028	C	G	40790028	3	3	7	1	0	0	0	0	1	0	0	0	12895	912	32	2	1739	2	PTPRT	20	40790028	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	998897	40790028	22235492	169	379										
DPM1	0	genome.wustl.edu	37	chr20	49552777	49552777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acatttttctattaatttctCtagaacttcttttcggtata	3	7	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	20	49552777	49552777	C	G	SNP	DPM1	ENST00000371582	human	ensembl	69_37n	-1	known	missense	c.667	p.E223Q	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419	21	0	0	38	13	25.49	-	-	-	G	49552777	C	G	49552777	3	3	7	1	0	0	0	0	1	0	0	0	4759	922	32	2	204	2	DPM1	20	49552777	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	8762749	49552777	13472743	170	380										
NRIP1	0	genome.wustl.edu	37	chr21	16340055	16340055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgctccttgaggctctgcctGatttgttgtgacagagcaac	11	10	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	21	16340055	16340055	G	C	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.459	p.I153M	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	29	0	0	26	4	13.33	-	-	-	C	16340055	G	C	16340055	3	2	7	1	0	0	0	0	1	0	0	0	10725	1280	45	2	3021	2	NRIP1	21	16340055	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		16340055	31789840	171	381										
PIK3IP1	0	genome.wustl.edu	37	chr22	31679123	31679123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gggggtggtgccctcctgagGgtcaactggagtctggctgg	19	9	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	22	31679123	31679123	G	A	SNP	PIK3IP1	ENST00000215912	human	ensembl	69_37n	-1	known	missense	c.739	p.P247S	0.565	NULL	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	-	no_errors	PIK3IP1	HGNC	ENSG00000100100	21	0	0	20	5	20	-	-	-	A	31679123	G	A	31679123	3	1	7	1	0	0	0	0	1	0	0	0	11991	1232	43	4	56	4	PIK3IP1	22	31679123	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		31679123	19625443	172	382										
LGALS1	0	genome.wustl.edu	37	chr22	38075655	38075655	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acctgaccgtcaagctgccaGatggatacgaattcaagttc	9	11	2	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	22	38075655	38075655	G	T	SNP	LGALS1	ENST00000215909	human	ensembl	69_37n	1	known	missense	c.307	p.D103Y	0.997	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS1	HGNC	ENSG00000100097	13	0	0	16	6	27.27	-	-	-	T	38075655	G	T	38075655	3	4	7	1	0	0	0	0	1	0	0	0	8792	942	33	2	321	2	LGALS1	22	38075655	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	6396532	38075655	13228911	173	383										
TUBGCP6	0	genome.wustl.edu	37	chr22	50659412	50659412	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	attccaccgtggcctggtggGagccacatctgacacattct	10	13	2	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	22	50659412	50659412	G	C	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.3376	p.P1126A	0.011	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	36	0	0	32	12	27.27	-	-	-	C	50659412	G	C	50659412	3	2	7	1	0	0	0	0	1	0	0	0	16867	1174	41	2	2123	2	TUBGCP6	22	50659412	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	12583757	50659412	645154	174	384										
STS	0	genome.wustl.edu	37	chrX	7252144	7252144	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gctgtgcgctggcaccctcaGaacagtgagtaaacagacct	11	12	1	3			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	7252144	7252144	G	A	SNP	STS	ENST00000217961	human	ensembl	69_37n	1	known	silent	c.1374	p.Q458	0.004	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846	27	0	0	21	5	19.23	-	-	-	A	7252144	G	A	7252144	2	1	7	1	0	0	0	0	0	0	0	1	15423	933	33	2		2	STS	23	7252144	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09		7252144	148018416	175	385										
PTCHD1	0	genome.wustl.edu	37	chrX	23397742	23397742	+	Missense_Mutation	SNP	G	G	A													0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	caccaagatccaggttccaaGgcctggttttaattacacgt							TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	23397742	23397742	G	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.386	p.R129K	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	39	0	0	26	5	16.13	-	-	-	A	23397742	G	A	23397742	3	1	7	1	0	0	0	0	1	0	0	0	12812	1000	35	4	392	4	PTCHD1	23	23397742	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	16145598	23397742	131872818	176	386	2	2								
PTCHD1	0	genome.wustl.edu	37	chrX	23397743	23397743	+	Missense_Mutation	SNP	G	G	T													0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	accaagatccaggttccaagGcctggttttaattacacgtt							TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	23397743	23397743	G	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.387	p.R129S	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	41	0	0	26	5	16.13	-	-	-	T	23397743	G	T	23397743	3	4	7	1	0	0	0	0	1	0	0	0	12812	1194	42	4	393	4	PTCHD1	23	23397743	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1	23397743	131872817	177	387	2	2								
DMD	0	genome.wustl.edu	37	chrX	32717249	32717249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ctgttgagaatagtgcatttGatgatgtaactgaaaatgtt	10	3	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	32717249	32717249	G	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.811	p.Q271E	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	45	0	0	45	5	10	-	-	-	C	32717249	G	C	32717249	3	2	7	1	0	0	0	0	1	0	0	0	4616	1299	45	2	10777	2	DMD	23	32717249	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	9319506	32717249	122553311	178	388										
KDM6A	0	genome.wustl.edu	37	chrX	44921975	44921975	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cagctggaaagtcagtttgtCttaatgcaacaacaccaagt	8	9	2	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	44921975	44921975	C	G	SNP	KDM6A	ENST00000433797	human	ensembl	69_37n	1	known	missense	c.436	p.L146V	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KDM6A	HGNC	ENSG00000147050	28	0	0	22	4	15.38	-	-	-	G	44921975	C	G	44921975	3	3	7	1	0	0	0	0	1	0	0	0	8190	900	32	2	1567	2	KDM6A	23	44921975	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	12204726	44921975	110348585	179	389										
ZNF673	0	genome.wustl.edu	37	chrX	46322225	46322225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tgtttgtggacttcaccctgGaggagtggcagcaactggac	14	9	1	0			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	46322225	46322225	G	C	SNP	ZNF673	ENST00000344302	human	ensembl	69_37n	1	known	missense	c.58	p.E20Q	0.991	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF673	HGNC	ENSG00000147121	73	0	0	45	22	32.84	-	-	-	C	46322225	G	C	46322225	3	2	7	1	0	0	0	0	1	0	0	0	18176	1175	41	2	64	2	ZNF673	23	46322225	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	1400250	46322225	108948335	180	390										
FAM120C	0	genome.wustl.edu	37	chrX	54160448	54160448	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	acgattgggatttccccactCaggctggtgatgaaatgctt	11	9	1	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	54160448	54160448	C	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.1648	p.E550Q	0.991	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	32	0	0	29	4	12.12	-	-	-	G	54160448	C	G	54160448	3	3	7	1	0	0	0	0	1	0	0	0	5458	835	29	2	1678	2	FAM120C	23	54160448	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	7838223	54160448	101110112	181	391										
WNK3	0	genome.wustl.edu	37	chrX	54263720	54263720	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	cactgaagatacatcagtctCacaagctgcgctgaaagata	8	10	2	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	54263720	54263720	C	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.4279	p.E1427K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	53	0	0	49	17	25.76	-	-	-	T	54263720	C	T	54263720	3	4	7	1	0	0	0	0	1	0	0	0	17476	835	29	2	1143	2	WNK3	23	54263720	Missense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	103272	54263720	101006840	182	392										
TEX11	0	genome.wustl.edu	37	chrX	69772023	69772023	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	ttcaaaatagccccaaacttCttccaggggacagagctcta	7	12	3	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	69772023	69772023	C	A	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	nonsense	c.2518	p.E840*	0.985	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	39	0	0	29	12	29.27	-	-	-	A	69772023	C	A	69772023	4	1	7	1	0	0	0	0	0	1	0	0	15869	922	32	2	316	2	TEX11	23	69772023	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	15508303	69772023	85498537	183	393										
RBM41	0	genome.wustl.edu	37	chrX	106332067	106332067	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tttgttcttcttttggggttCatctggatcaagacaaagag	10	6	5	2			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	106332067	106332067	C	A	SNP	RBM41	ENST00000372479	human	ensembl	69_37n	-1	known	nonsense	c.526	p.E176*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682	23	0	0	39	16	29.09	-	-	-	A	106332067	C	A	106332067	4	1	7	1	0	0	0	0	0	1	0	0	13218	835	29	2	736	2	RBM41	23	106332067	Nonsense_Mutation	SNP	C	TCGA-A1-A0SI-01A-11D-A142-09	36560044	106332067	48938493	184	394										
GUCY2F	0	genome.wustl.edu	37	chrX	108684643	108684643	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	agactccctgaagaaaaggaGagtcttggggacctcccact	11	11	1	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	108684643	108684643	G	C	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	silent	c.1638	p.L546	0.284	superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	36	0	0	57	10	14.93	-	-	-	C	108684643	G	C	108684643	2	2	7	1	0	0	0	0	0	0	0	1	6949	929	33	2		2	GUCY2F	23	108684643	Silent	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	2352576	108684643	46585917	185	395										
GRIA3	0	genome.wustl.edu	37	chrX	122528948	122528948	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	gggtgaggctggatgaaaggGaattccctgaagccaagaat	15	6	0	4			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	122528948	122528948	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.880	p.E294K	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	34	0	0	21	10	32.26	-	-	-	A	122528948	G	A	122528948	3	1	7	1	0	0	0	0	1	0	0	0	6820	1175	41	2	902	2	GRIA3	23	122528948	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	13844305	122528948	32741612	186	396										
PLXNA3	0	genome.wustl.edu	37	chrX	153698349	153698349	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.60752688172043	113	2.2804835764687e-46	4.16728961715955	4.60189773114807	3.73811410459588	0.199091243950445	0.775741978420459	86	tccgcacggccagcagccctGatagcctccgctcacgggca	11	18	1	1			TCGA-A1-A0SI-01A-11D-A142-09	TCGA-A1-A0SI-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e218c272-a7e1-4bc9-b8c5-d2d1c903550f	fbcab9dc-4a6b-4928-9459-699c9932e3e1	X	153698349	153698349	G	C	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.4825	p.D1609H	0.995	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	23	0	0	15	8	34.78	-	-	-	C	153698349	G	C	153698349	3	2	7	1	0	0	0	0	1	0	0	0	12195	1290	45	2	4935	2	PLXNA3	23	153698349	Missense_Mutation	SNP	G	TCGA-A1-A0SI-01A-11D-A142-09	31169401	153698349	1572211	187	397										
SPEN	0	genome.wustl.edu	37	chr1	16258909	16258915	+	Frame_Shift_Del	DEL	CCCTGTT	CCCTGTT	-													0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	aaaaacccccctgaaaccgcCcctgttgaagttgtagagaa							TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	CCCTGTT	CCCTGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	1	16258909	16258915	CCCTGTT	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.6174_6180	p.P2059fs	0.005:0.012:0.131:0.122:0.233:0.299:0.561	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	135	0	0	39	9	17.65	-	-	-	-	16258915	CCCTGTT	-	16258909	7	5	8	1	0	1	0	1	0	0	0	0	15129	610	22	0	6216	0	SPEN	1	16258909	Frame_Shift_Del	DEL	CCCTGTT	TCGA-A1-A0SJ-01A-11D-A099-09		16258909	232991712	1	398										
CHML	0	genome.wustl.edu	37	chr1	241798828	241798828	+	Frame_Shift_Del	DEL	G	G	-													0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gatggcttcttctgtttcatGgatcaggtcctgccatacaa							TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	1	241798828	241798828	G	-	DEL	CHML	ENST00000366553	human	ensembl	69_37n	-1	known	frame_shift_del	c.241	p.H81fs	0.004	pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	92	0	0	124	71	36.04	-	-	-	-	241798828	G	-	241798828	7	5	8	1	0	1	0	1	0	0	0	0	3380	1348	47	0	1733	0	CHML	1	241798828	Frame_Shift_Del	DEL	G	TCGA-A1-A0SJ-01A-11D-A099-09	225539919	241798828	7451793	2	399										
ZBTB11	0	genome.wustl.edu	37	chr3	101378855	101378855	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	cgcaaagaggcactgtactgAaactgttttttacacaacta	7	9	0	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	3	101378855	101378855	A	C	SNP	ZBTB11	ENST00000312938	human	ensembl	69_37n	-1	known	missense	c.1818	p.F606L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422	135	0	0	82	61	42.66	-	-	-	C	101378855	A	C	101378855	3	2	8	1	0	0	0	0	1	0	0	0	17620	243	9	5	1367	5	ZBTB11	3	101378855	Missense_Mutation	SNP	A	TCGA-A1-A0SJ-01A-11D-A099-09		101378855	96643575	3	400										
HNRPDL	0	genome.wustl.edu	37	chr4	83350497	83350497	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	tatcctccatagtgacggagCtgtcggcaggggggtgctgg	17	9	0	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	4	83350497	83350497	C	G	SNP	HNRPDL	ENST00000295470	human	ensembl	69_37n	-1	known	missense	c.347	p.S116T	0.255	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRPDL	HGNC	ENSG00000152795	14	0	0	48	27	36	-	-	-	G	83350497	C	G	83350497	3	3	8	1	0	0	0	0	1	0	0	0	7327	797	28	4	943	4	HNRPDL	4	83350497	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09		83350497	107803779	4	401										
FAF2	0	genome.wustl.edu	37	chr5	175875463	175875463	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	agcagacagagaagctgctgCagtttcaggtagcagcgagt	14	8	1	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	5	175875463	175875463	C	A	SNP	FAF2	ENST00000261942	human	ensembl	69_37n	1	known	missense	c.55	p.Q19K	1.000	superfamily_UBA-like	pfam_UBX,superfamily_UBA-like,smart_UAS,pfscan_UBX	-	no_errors	FAF2	HGNC	ENSG00000113194	45	0	0	47	23	32.86	-	-	-	A	175875463	C	A	175875463	3	1	8	1	0	0	0	0	1	0	0	0	5410	711	25	4	57	4	FAF2	5	175875463	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09		175875463	5039797	5	402										
IKZF1	0	genome.wustl.edu	37	chr7	50468114	50468114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gaactcgcaggacgcgctccGcgtggtcagcaccagcgggg	16	14	1	0			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	7	50468114	50468114	G	A	SNP	IKZF1	ENST00000331340	human	ensembl	69_37n	1	known	missense	c.1349	p.R450H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811	30	0	0	19	6	24	-	-	-	A	50468114	G	A	50468114	3	1	8	1	0	0	0	0	1	0	0	0	7668	1087	38	1	1375	1	IKZF1	7	50468114	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		50468114	108670549	6	403										
RANBP6	0	genome.wustl.edu	37	chr9	6012961	6012961	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	tctgtctggccatggcctacTtgaacaaattagatttacaa	7	9	2	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	9	6012961	6012961	T	C	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.2647	p.S883G	0.932	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	84	0	0	40	56	58.33	-	-	-	C	6012961	T	C	6012961	3	2	8	1	0	0	0	0	1	0	0	0	13114	1609	56	5	674	5	RANBP6	9	6012961	Missense_Mutation	SNP	T	TCGA-A1-A0SJ-01A-11D-A099-09		6012961	135200470	7	404										
PPFIBP2	0	genome.wustl.edu	37	chr11	7650734	7650734	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gggctgttaaaccagtaccgGaaggtaaaggagattgtgat	14	5	0	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	11	7650734	7650734	G	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	silent	c.933	p.R311	0.475	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	194	0	0	162	64	28.32	-	-	-	T	7650734	G	T	7650734	2	4	8	1	0	0	0	0	0	0	0	1	12387	1161	41	2		2	PPFIBP2	11	7650734	Silent	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		7650734	127355782	8	405										
ASCL3	0	genome.wustl.edu	37	chr11	8959533	8959533	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	ccaggataagagagtcgctgGgaaaaggcagccgtggcagc	16	9	0	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	11	8959533	8959533	G	C	SNP	ASCL3	ENST00000325884	human	ensembl	69_37n	-1	known	missense	c.176	p.P59R	0.167	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ASCL3	HGNC	ENSG00000176009	129	1	0.76	80	24	23.08	-	-	-	C	8959533	G	C	8959533	3	2	8	1	0	0	0	0	1	0	0	0	1039	1232	43	4	373	4	ASCL3	11	8959533	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	1308799	8959533	126046983	9	406										
GNPTAB	0	genome.wustl.edu	37	chr12	102161847	102161847	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	caccatcccaatcgcaggctGaattattacaagccttgtca	6	13	1	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	12	102161847	102161847	G	A	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.1376	p.S459L	0.999	pfam_Notch_dom,superfamily_Notch_dom,smart_Notch_dom,pfscan_Notch_dom	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	66	0	0	61	28	31.46	-	-	-	A	102161847	G	A	102161847	3	1	8	1	0	0	0	0	1	0	0	0	6597	1294	45	2	2438	2	GNPTAB	12	102161847	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		102161847	31690048	10	407										
GJB2	0	genome.wustl.edu	37	chr13	20763283	20763283	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	acgtacatgaaggcggcttcGaagatgacccggaagaagat	13	8	0	5			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	13	20763283	20763283	G	C	SNP	GJB2	ENST00000382844	human	ensembl	69_37n	-1	known	missense	c.438	p.F146L	0.647	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin26	-	no_errors	GJB2	HGNC	ENSG00000165474	88	0	0	75	20	21.05	-	-	-	C	20763283	G	C	20763283	3	2	8	1	0	0	0	0	1	0	0	0	6460	1049	37	3	246	3	GJB2	13	20763283	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		20763283	94406595	11	408										
NFATC4	0	genome.wustl.edu	37	chr14	24845882	24845882	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	ccgccagccccctttcggccGcctcctcttcctgcatcccc	6	24	1	0			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	14	24845882	24845882	G	A	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	silent	c.2628	p.P876	0.948	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	29	0	0	61	12	16.44	-	-	-	A	24845882	G	A	24845882	2	1	8	1	0	0	0	0	0	0	0	1	10437	1074	38	1		1	NFATC4	14	24845882	Silent	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		24845882	82503658	12	409										
CILP	0	genome.wustl.edu	37	chr15	65489601	65489601	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	agagcatcccactgcacttgAactccagacaggcagctgag	10	13	0	4			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	15	65489601	65489601	A	T	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.3023	p.F1008Y	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	54	0	0	39	12	23.53	-	-	-	T	65489601	A	T	65489601	3	4	8	1	0	0	0	0	1	0	0	0	3458	246	9	5	535	5	CILP	15	65489601	Missense_Mutation	SNP	A	TCGA-A1-A0SJ-01A-11D-A099-09		65489601	37041791	13	410										
ALG1	0	genome.wustl.edu	37	chr16	5132586	5132586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	cggacctgggtgtctgtctgCacacgtcctccagtggcctg	13	14	2	0			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	16	5132586	5132586	C	T	SNP	ALG1	ENST00000262374	human	ensembl	69_37n	1	known	missense	c.1099	p.H367Y	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011	138	0	0	170	36	17.48	-	-	-	T	5132586	C	T	5132586	3	4	8	1	0	0	0	0	1	0	0	0	510	710	25	4	1141	4	ALG1	16	5132586	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09		5132586	85222167	14	411										
NLRC5	0	genome.wustl.edu	37	chr16	57059665	57059665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	ctcaacttgatcacgaggttCctgacaccgtccgagctcct	8	15	2	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	16	57059665	57059665	C	T	SNP	NLRC5	ENST00000538805	human	ensembl	69_37n	1	putative	missense	c.67	p.P23S	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	80	0	0	81	40	33.06	-	-	-	T	57059665	C	T	57059665	3	4	8	1	0	0	0	0	1	0	0	0	10542	854	30	2	824	2	NLRC5	16	57059665	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09	51927079	57059665	33295088	15	412										
PSMD11	0	genome.wustl.edu	37	chr17	30771560	30771560	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	agatggcggcggcggcggtgGtggagttccagagagcccag	20	9	0	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	17	30771560	30771560	G	C	SNP	PSMD11	ENST00000261712	human	ensembl	69_37n	1	known	missense	c.19	p.V7L	1.000	NULL	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD11	HGNC	ENSG00000108671	32	0	0	19	13	40.62	-	-	-	C	30771560	G	C	30771560	3	2	8	1	0	0	0	0	1	0	0	0	12774	1261	44	4	21	4	PSMD11	17	30771560	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		30771560	50423650	16	413										
SCN4A	0	genome.wustl.edu	37	chr17	62022840	62022840	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gacttgttgttgacctcggaGatgtcgaacctctcagaggt	12	9	1	3			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	17	62022840	62022840	G	C	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.3600	p.I1200M	0.255	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	109	0	0	674	267	28.37	-	-	-	C	62022840	G	C	62022840	3	2	8	1	0	0	0	0	1	0	0	0	14008	932	33	2	1934	2	SCN4A	17	62022840	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	31251280	62022840	19172370	17	414										
AMZ2	0	genome.wustl.edu	37	chr17	66246548	66246548	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	cccaagactttgaacagttcTtcagtgatccttacagaaag	7	10	2	4			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	17	66246548	66246548	T	G	SNP	AMZ2	ENST00000359904	human	ensembl	69_37n	1	known	missense	c.220	p.F74V	1.000	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ2	HGNC	ENSG00000196704	96	0	0	96	90	48.13	-	-	-	G	66246548	T	G	66246548	3	3	8	1	0	0	0	0	1	0	0	0	597	1609	56	5	222	5	AMZ2	17	66246548	Missense_Mutation	SNP	T	TCGA-A1-A0SJ-01A-11D-A099-09	4223708	66246548	14948662	18	415										
GRIN2C	0	genome.wustl.edu	37	chr17	72846850	72846850	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	acaggctgcagagaggcactGtagcgaggccacacggggta	16	10	0	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	17	72846850	72846850	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	silent	c.1170	p.Y390	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	20	0	0	23	9	28.12	-	-	-	A	72846850	G	A	72846850	2	1	8	1	0	0	0	0	0	0	0	1	6832	1372	48	4		4	GRIN2C	17	72846850	Silent	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	6600302	72846850	8348360	19	416										
NOTUM	0	genome.wustl.edu	37	chr17	79914949	79914949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gagcaccccggtgccccccgCgctgcaaggagggccagacg	15	17	0	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	17	79914949	79914949	C	T	SNP	NOTUM	ENST00000409678	human	ensembl	69_37n	-1	known	missense	c.697	p.A233T	1.000	pfam_Pec_acetylest	pfam_Pec_acetylest	-	no_errors	NOTUM	HGNC	ENSG00000185269	22	0	0	11	26	70.27	-	-	-	T	79914949	C	T	79914949	3	4	8	1	0	0	0	0	1	0	0	0	10624	782	27	1	813	1	NOTUM	17	79914949	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09	7068099	79914949	1280261	20	417										
NUP62	0	genome.wustl.edu	37	chr19	50412785	50412785	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gctcaagttgagctttgaagCaccgatccccaaagaaaatc	8	11	1	3			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	19	50412785	50412785	C	A	SNP	NUP62	ENST00000352066	human	ensembl	69_37n	-1	known	missense	c.280	p.A94S	0.000	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024	118	0	0	98	60	37.97	-	-	-	A	50412785	C	A	50412785	3	1	8	1	0	0	0	0	1	0	0	0	10841	710	25	4	1292	4	NUP62	19	50412785	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09		50412785	8716198	21	418										
ZNF543	0	genome.wustl.edu	37	chr19	57839971	57839971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	aagctttttgcgagagtgcaGacctcattcaacactacatt	7	10	2	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	19	57839971	57839971	G	A	SNP	ZNF543	ENST00000321545	human	ensembl	69_37n	1	known	missense	c.1141	p.D381N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	127	0	0	101	15	12.93	-	-	-	A	57839971	G	A	57839971	3	1	8	1	0	0	0	0	1	0	0	0	18072	942	33	2	1155	2	ZNF543	19	57839971	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	7427186	57839971	1289012	22	419										
SNAI1	0	genome.wustl.edu	37	chr20	48604526	48604526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	ccagtgccaggcgtgtgctcGgaccttctcccgaatgtccc	11	16	1	0			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	20	48604526	48604526	G	A	SNP	SNAI1	ENST00000244050	human	ensembl	69_37n	1	known	missense	c.728	p.R243Q	0.963	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI1	HGNC	ENSG00000124216	94	0	0	167	74	30.71	-	-	-	A	48604526	G	A	48604526	3	1	8	1	0	0	0	0	1	0	0	0	14915	1116	39	1	738	1	SNAI1	20	48604526	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09		48604526	14420994	23	420										
TH1L	0	genome.wustl.edu	37	chr20	57566094	57566094	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	gacatcaccgtcctgttcaaGatgttcacaagcatggaccc	8	13	3	1			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	20	57566094	57566094	G	C	SNP	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	missense	c.945	p.K315N	1.000	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	83	0	0	147	27	15.52	-	-	-	C	57566094	G	C	57566094	3	2	8	1	0	0	0	0	1	0	0	0	15934	933	33	2	975	2	TH1L	20	57566094	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	8961568	57566094	5459426	24	421										
COL20A1	0	genome.wustl.edu	37	chr20	61939981	61939981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	caaggtggtgattctggtgaCggacggcaagtcccaggacg	16	9	1	2			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	20	61939981	61939981	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	missense	c.863	p.T288M	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	20	0	0	121	23	15.97	-	-	-	T	61939981	C	T	61939981	3	4	8	1	0	0	0	0	1	0	0	0	3709	536	19	1	889	1	COL20A1	20	61939981	Missense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09	4373887	61939981	1085539	25	422										
OFD1	0	genome.wustl.edu	37	chrX	13776561	13776561	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	aattgcaactgaagcaaactCagacaggttagagacgtttt	9	7	1	3			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	X	13776561	13776561	C	T	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	nonsense	c.1648	p.Q550*	0.998	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	154	0	0	108	37	25.52	-	-	-	T	13776561	C	T	13776561	4	4	8	1	0	0	0	0	0	1	0	0	10911	827	29	2	1706	2	OFD1	23	13776561	Nonsense_Mutation	SNP	C	TCGA-A1-A0SJ-01A-11D-A099-09		13776561	141493999	26	423										
MCTS1	0	genome.wustl.edu	37	chrX	119738713	119738713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	5	0.187663520843058	2.38636363636364	2.86363636363636	2.14772727272727	1	1	0	aaagcaaagggggaacatggGcaaaggaaggtgggttttgt	17	3	0	0			TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a55c6a44-c0f5-4300-8df4-4a70befe2d3b	aaf63cff-b2e2-4f9b-868e-e7a1637cc14b	X	119738713	119738713	G	A	SNP	MCTS1	ENST00000371315	human	ensembl	69_37n	1	known	missense	c.5	p.G2D	0.999	NULL	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	-	no_errors	MCTS1	HGNC	ENSG00000232119	243	1	0.41	237	52	17.87	-	-	-	A	119738713	G	A	119738713	3	1	8	1	0	0	0	0	1	0	0	0	9473	1203	42	4	22	4	MCTS1	23	119738713	Missense_Mutation	SNP	G	TCGA-A1-A0SJ-01A-11D-A099-09	105962152	119738713	35531847	27	424										
PRAMEF11	0	genome.wustl.edu	37	chr1	12888389	12888389	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ccttgggtaagcagtgcatcAagcccatcgagcacagcttg	11	12	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12888389	12888389	A	C	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	silent	c.135	p.L45	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	62	0	0	136	28	17.07	-	-	-	C	12888389	A	C	12888389	2	2	9	1	0	0	0	0	0	0	0	1	12504	117	5	5		5	PRAMEF11	1	12888389	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09		12888389	236362232	1	425										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939782	12939782	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aggagaatttggagaggcacAagactgtaattggtcagtct	13	5	2	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12939782	12939782	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	157	0	0	441	70	13.67	-	-	-	G	12939782	A	G	12939782	2	3	9	1	0	0	0	0	0	0	0	1	12517	117	5	5		5	PRAMEF4	1	12939782	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	51393	12939782	236310839	2	426										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939851	12939851	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tgactgatactcgggcactgGgatagatgcttcaagtctga	12	8	2	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12939851	12939851	G	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.951	p.S317	0.003	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	274	0	0	395	67	14.47	-	-	-	A	12939851	G	A	12939851	2	1	9	1	0	0	0	0	0	0	0	1	12517	1219	43	4		4	PRAMEF4	1	12939851	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	69	12939851	236310770	3	427										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	44	0	0	39	15	27.78	-	-	-	A	12980232	G	A	12980232	2	1	9	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	40381	12980232	236270389	4	428										
PRAMEF13	0	genome.wustl.edu	37	chr1	13448455	13448455	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	attttctctagcagagctccGaggggttcaagactgatgcg	12	9	2	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	13448455	13448455	G	T	SNP	PRAMEF13	ENST00000376132	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495	76	0	0	67	13	16.25	-	-	-	T	13448455	G	T	13448455	2	4	9	1	0	0	0	0	0	0	0	1	12506	1045	37	3		3	PRAMEF13	1	13448455	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	468223	13448455	235802166	5	429										
DHDDS	0	genome.wustl.edu	37	chr1	26784300	26784300	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agtgatatctctgagtctctGcttgataagtgcctctatac	8	9	3	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	26784300	26784300	G	C	SNP	DHDDS	ENST00000416052	human	ensembl	69_37n	1	putative	missense	c.190	p.A64P	1.000	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHDDS	HGNC	ENSG00000117682	652	0	0	102	18	15	-	-	-	C	26784300	G	C	26784300	3	2	9	1	0	0	0	0	1	0	0	0	4514	1306	46	4	583	4	DHDDS	1	26784300	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	13335845	26784300	222466321	6	430										
GMEB1	0	genome.wustl.edu	37	chr1	29016663	29016663	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cacggcagttgtagcagtagAaactcacacgatacacaaaa	8	10	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	29016663	29016663	A	T	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	1	known	missense	c.206	p.E69V	1.000	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	131	0	0	58	42	42	-	-	-	T	29016663	A	T	29016663	3	4	9	1	0	0	0	0	1	0	0	0	6539	246	9	5	212	5	GMEB1	1	29016663	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	2232363	29016663	220233958	7	431										
YTHDF2	0	genome.wustl.edu	37	chr1	29064036	29064036	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctcccattttcagcctcttcCtcactaccattcctgacgcc	3	19	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	29064036	29064036	C	T	SNP	YTHDF2	ENST00000478283	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.801	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	114	0	0	23	5	17.86	-	-	-	T	29064036	C	T	29064036	1	4	9	0	1	0	0	0	0	0	0	0	17596	696	24	4		4	YTHDF2	1	29064036	RNA	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	47373	29064036	220186585	8	432										
SEMA6C	0	genome.wustl.edu	37	chr1	151109550	151109550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggctacgcgggagaactgcaCctaggggaggagagtggagt	19	7	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	151109550	151109550	C	A	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.757	p.V253L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	58	0	0	46	22	32.35	-	-	-	A	151109550	C	A	151109550	3	1	9	1	0	0	0	0	1	0	0	0	14129	521	18	4	2171	4	SEMA6C	1	151109550	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	122045514	151109550	98141071	9	433										
RXFP4	0	genome.wustl.edu	37	chr1	155912487	155912487	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	accttcagggatctgcggttGaggctgtggccccagggcgg	17	11	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	155912487	155912487	G	T	SNP	RXFP4	ENST00000368318	human	ensembl	69_37n	1	known	missense	c.987	p.L329F	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080	34	0	0	37	15	28.85	-	-	-	T	155912487	G	T	155912487	3	4	9	1	0	0	0	0	1	0	0	0	13848	1281	45	2	989	2	RXFP4	1	155912487	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	4802937	155912487	93338134	10	434										
RFWD2	0	genome.wustl.edu	37	chr1	176012391	176012391	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aaagtcaacactccaacaccTcttctcatgctcctggaagc	5	15	3	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	176012391	176012391	T	G	SNP	RFWD2	ENST00000459744	human	ensembl	69_37n	-1	novel	missense	c.702	p.R234S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon	RFWD2	HGNC	ENSG00000143207	185	0	0	86	68	44.16	-	-	-	G	176012391	T	G	176012391	3	3	9	1	0	0	0	0	1	0	0	0	13343	1550	54	5	680	5	RFWD2	1	176012391	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	20099904	176012391	73238230	11	435										
USH2A	0	genome.wustl.edu	37	chr1	215848217	215848217	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagagttgtgatgctggtggGtttgctggtggagcatcctc	16	7	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	215848217	215848217	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13036	p.P4346T	0.002	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	197	0	0	77	53	40.77	-	-	-	T	215848217	G	T	215848217	3	4	9	1	0	0	0	0	1	0	0	0	17133	1261	44	4	2612	4	USH2A	1	215848217	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	39835826	215848217	33402404	12	436										
LIN9	0	genome.wustl.edu	37	chr1	226426717	226426717	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tgcaaaactttgtttaggtcCttgttcagctgttcaagctc	8	9	2	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	226426717	226426717	C	T	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	silent	c.1248	p.K416	0.999	NULL	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	336	0	0	46	29	38.67	-	-	-	T	226426717	C	T	226426717	2	4	9	1	0	0	0	0	0	0	0	1	8869	680	24	4		4	LIN9	1	226426717	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	10578500	226426717	22823904	13	437										
SNAP47	0	genome.wustl.edu	37	chr1	227920447	227920447	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gctgcaaaggacccgacatgCgcccagtccccaaggacgaa	11	15	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	227920447	227920447	C	T	SNP	SNAP47	ENST00000480265	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNAP47	HGNC	ENSG00000143740	62	0	0	104	14	11.86	-	-	-	T	227920447	C	T	227920447	1	4	9	0	1	0	0	0	0	0	0	0	14921	783	27	1		1	SNAP47	1	227920447	RNA	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	1493730	227920447	21330174	14	438										
MRPL55	0	genome.wustl.edu	37	chr1	228295526	228295526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aggaggatgtgtgcaggcggCggagtgcaggtccggtggcc	21	8	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	228295526	228295526	C	T	SNP	MRPL55	ENST00000366731	human	ensembl	69_37n	-1	known	missense	c.179	p.R60H	0.000	pfam_Ribosomal_L55_mit	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910	113	0	0	45	7	13.46	-	-	-	T	228295526	C	T	228295526	3	4	9	1	0	0	0	0	1	0	0	0	9891	768	27	1	323	1	MRPL55	1	228295526	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	375079	228295526	20955095	15	439										
OBSCN	0	genome.wustl.edu	37	chr1	228486227	228486227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggccacagctacactgcagtGtgagctgagcaaggtggccc	14	12	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	228486227	228486227	G	T	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	missense	c.3089	p.C1030F	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	22	0	0	65	36	35.64	-	-	-	T	228486227	G	T	228486227	3	4	9	1	0	0	0	0	1	0	0	0	10885	1392	48	4		4	OBSCN	1	228486227	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	190701	228486227	20764394	16	440										
VIT	0	genome.wustl.edu	37	chr2	37010495	37010497	+	In_Frame_Del	DEL	AAG	AAG	-													0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctttccaggacttgttccaaAagaagaattgagcacacagt							TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	37010495	37010497	AAG	-	DEL	VIT	ENST00000379242	human	ensembl	69_37n	1	known	in_frame_del	c.860_862	p.E289in_frame_del	1.000:0.995:1.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	210	0	0	126	79	37.8	-	-	-	-	37010497	AAG	-	37010495	7	5	9	1	0	1	0	1	0	0	0	0	17268	14	1	0	1023	0	VIT	2	37010495	In_Frame_Del	DEL	AAG	TCGA-A1-A0SK-01A-12D-A099-09		37010495	206188878	17	441										
FAM178B	0	genome.wustl.edu	37	chr2	97613616	97613616	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agaccaaaggctcccaaagaTgtttctggaggccatgtcag	11	10	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	97613616	97613616	T	C	SNP	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	silent	c.1461	p.T487	0.758	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	145	0	0	120	24	16.67	-	-	-	C	97613616	T	C	97613616	2	2	9	1	0	0	0	0	0	0	0	1	5544	1451	51	5		5	FAM178B	2	97613616	Silent	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	60603121	97613616	145585757	18	442										
FAM178B	0	genome.wustl.edu	37	chr2	97617140	97617140	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aacagccactggagcagggaTaccgggcagtcaggcatgtg	15	10	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	97617140	97617140	T	C	SNP	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	silent	c.1413	p.V471	0.144	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	289	0	0	72	11	13.25	-	-	-	C	97617140	T	C	97617140	2	2	9	1	0	0	0	0	0	0	0	1	5544	1393	49	5		5	FAM178B	2	97617140	Silent	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	3524	97617140	145582233	19	443										
ANKRD36B	0	genome.wustl.edu	37	chr2	98165911	98165911	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	atttttctccatccttttttTctctggctatattcaaaaca	2	10	3	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	123	0	0	258	85	24.71	-	-	-	C	98165911	T	C	98165911	1	2	9	0	1	0	0	0	0	0	0	0	665	1783	62	5		5	ANKRD36B	2	98165911	RNA	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	548771	98165911	145033462	20	444										
NPAS2	0	genome.wustl.edu	37	chr2	101541639	101541639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	acaagtctgagaagaagcgtCgggaccagttcaatgttctc	11	9	3	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	101541639	101541639	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.259	p.R87W	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	228	1	0.44	82	66	44.59	-	-	-	T	101541639	C	T	101541639	3	4	9	1	0	0	0	0	1	0	0	0	10635	875	31	1	70	1	NPAS2	2	101541639	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	3375728	101541639	141657734	21	445										
BUB1	0	genome.wustl.edu	37	chr2	111419365	111419365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	taggttactggaagacatggCgctctcagttcctgctggga	13	9	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	111419365	111419365	C	T	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	silent	c.1011	p.A337	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	273	1	0.36	60	38	38.78	-	-	-	T	111419365	C	T	111419365	2	4	9	1	0	0	0	0	0	0	0	1	1579	755	27	1		1	BUB1	2	111419365	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	9877726	111419365	131780008	22	446										
SMPD4	0	genome.wustl.edu	37	chr2	130914346	130914346	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagtgagggttggctccgccGggggagagcactgggcacct	18	11	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	130914346	130914346	G	T	SNP	SMPD4	ENST00000439886	human	ensembl	69_37n	-1	novel	silent	c.741	p.P247	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMPD4	HGNC	ENSG00000136699	42	0	0	27	6	18.18	-	-	-	T	130914346	G	T	130914346	2	4	9	1	0	0	0	0	0	0	0	1	14896	1131	39	3		3	SMPD4	2	130914346	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	19494981	130914346	112285027	23	447										
SCN9A	0	genome.wustl.edu	37	chr2	167159748	167159748	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	acactcagacagaacacagtCaggatcatgacatcagaaag	8	10	4	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	167159748	167159748	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	339	0	0	103	49	32.24	-	-	-	T	167159748	C	T	167159748	2	4	9	1	0	0	0	0	0	0	0	1	14013	813	29	2		2	SCN9A	2	167159748	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	36245402	167159748	76039625	24	448										
PASK	0	genome.wustl.edu	37	chr2	242054403	242054403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cactgatctttgcagccaccGgacccaggcacccaggcctg	10	17	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	242054403	242054403	G	A	SNP	PASK	ENST00000403638	human	ensembl	69_37n	-1	putative	missense	c.3388	p.R1130W	0.000	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_PAS_fold,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	46	0	0	36	15	29.41	-	-	-	A	242054403	G	A	242054403	3	1	9	1	0	0	0	0	1	0	0	0	11545	1131	39	1		1	PASK	2	242054403	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	74894655	242054403	1144970	25	449										
MUC4	0	genome.wustl.edu	37	chr3	195510361	195510361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aggtggtgtcacctgtggatGctgaggaagtgtcggtgaca	17	6	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	3	195510361	195510361	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.8090	p.A2697V	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	116	0	0	208	35	14.4	-	-	-	A	195510361	G	A	195510361	3	1	9	1	0	0	0	0	1	0	0	0	10050	1319	46	4		4	MUC4	3	195510361	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		195510361	2512069	26	450										
YIPF7	0	genome.wustl.edu	37	chr4	44626655	44626655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggcgcaaccagacaggatgaCcatggggagcaggcagtaac	15	10	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	44626655	44626655	C	T	SNP	YIPF7	ENST00000332990	human	ensembl	69_37n	-1	known	missense	c.643	p.V215I	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF7	HGNC	ENSG00000177752	249	0	0	36	7	15.91	-	-	-	T	44626655	C	T	44626655	3	4	9	1	0	0	0	0	1	0	0	0	17580	507	18	4	207	4	YIPF7	4	44626655	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		44626655	146527621	27	451										
UGT2B17	0	genome.wustl.edu	37	chr4	69416556	69416556	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	atagggatcccatggtagatTgcctcatagatgccattggt	11	8	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	69416556	69416556	T	C	SNP	UGT2B17	ENST00000317746	human	ensembl	69_37n	-1	known	silent	c.1152	p.A384	0.720	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888	134	0	0	45	8	15.09	-	-	-	C	69416556	T	C	69416556	2	2	9	1	0	0	0	0	0	0	0	1	17056	1799	63	5		5	UGT2B17	4	69416556	Silent	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	24789901	69416556	121737720	28	452										
UGT2B15	0	genome.wustl.edu	37	chr4	69533861	69533861	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cccaataggttcgaatgagcCacatttcagctttccccatt	6	13	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	69533861	69533861	C	T	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	nonsense	c.770	p.W257*	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	223	0	0	139	38	21.47	-	-	-	T	69533861	C	T	69533861	4	4	9	1	0	0	0	0	0	1	0	0	17055	595	21	4	2459	4	UGT2B15	4	69533861	Nonsense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	117305	69533861	121620415	29	453										
SCD5	0	genome.wustl.edu	37	chr4	83719603	83719603	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tggcctctccgggccgccgcCgccctcagagctttcgagcc	12	19	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	83719603	83719603	C	A	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	missense	c.88	p.G30C	0.004	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	63	0	0	12	7	36.84	-	-	-	A	83719603	C	A	83719603	3	1	9	1	0	0	0	0	1	0	0	0	13974	652	23	3	1130	3	SCD5	4	83719603	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	14185742	83719603	107434673	30	454										
SPRY1	0	genome.wustl.edu	37	chr4	124323702	124323702	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ccggggtcagggtaaaccatCatgatttttggaggtgggtt	15	6	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	124323702	124323702	C	G	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	nonsense	c.956	p.S319*	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	42	0	0	98	17	14.66	-	-	-	G	124323702	C	G	124323702	4	3	9	1	0	0	0	0	0	1	0	0	15196	838	29	2	958	2	SPRY1	4	124323702	Nonsense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	40604099	124323702	66830574	31	455										
CTSO	0	genome.wustl.edu	37	chr4	156863572	156863572	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tatgtacttctgctgagtatCtgggaaacttggaaggtttg	12	5	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	156863572	156863572	C	A	SNP	CTSO	ENST00000433477	human	ensembl	69_37n	-1	known	missense	c.281	p.R94I	0.050	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043	278	0	0	79	10	11.24	-	-	-	A	156863572	C	A	156863572	3	1	9	1	0	0	0	0	1	0	0	0	4072	913	32	2	708	2	CTSO	4	156863572	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	32539870	156863572	34290704	32	456										
CXXC5	0	genome.wustl.edu	37	chr5	139060486	139060486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gacctggcggcggccatggcGgtggacaaaagcaaccctac	14	13	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	139060486	139060486	G	A	SNP	CXXC5	ENST00000302517	human	ensembl	69_37n	1	known	silent	c.378	p.A126	0.097	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604	76	0	0	26	9	25.71	-	-	-	A	139060486	G	A	139060486	2	1	9	1	0	0	0	0	0	0	0	1	4130	1103	39	1		1	CXXC5	5	139060486	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		139060486	41854774	33	457										
PCDHB16	0	genome.wustl.edu	37	chr5	140563656	140563656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cctccctggtctccatcaacGcagacaacggccacctgttc	7	18	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	140563656	140563656	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.1522	p.A508T	0.066	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	95	0	0	99	15	13.16	-	-	-	A	140563656	G	A	140563656	3	1	9	1	0	0	0	0	1	0	0	0	11614	1087	38	1	1524	1	PCDHB16	5	140563656	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	1503170	140563656	40351604	34	458										
PCDHB14	0	genome.wustl.edu	37	chr5	140604126	140604126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cccaccagaagtgaccatatCgtcgattacaaagagaattc	7	11	0	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	140604126	140604126	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	missense	c.1049	p.S350L	0.061	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	98	0	0	95	12	11.21	-	-	-	T	140604126	C	T	140604126	3	4	9	1	0	0	0	0	1	0	0	0	11612	893	31	1	1051	1	PCDHB14	5	140604126	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	40470	140604126	40311134	35	459										
COL21A1	0	genome.wustl.edu	37	chr6	55940289	55940289	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	caacatacaggcatccctggGgctcctttttttccttgctg	8	13	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	55940289	55940289	G	T	SNP	COL21A1	ENST00000244728	human	ensembl	69_37n	-1	known	silent	c.1899	p.A633	0.896	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749	168	0	0	85	32	27.35	-	-	-	T	55940289	G	T	55940289	2	4	9	1	0	0	0	0	0	0	0	1	3710	1219	43	4		4	COL21A1	6	55940289	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		55940289	115174778	36	460										
LIN28B	0	genome.wustl.edu	37	chr6	105526463	105526463	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	caggaagcagaatcccagccAtgcacttcaactctccctcg	7	16	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	105526463	105526463	A	T	SNP	LIN28B	ENST00000345080	human	ensembl	69_37n	1	known	silent	c.558	p.P186	0.338	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,prints_CSP_DNA-bd,pfscan_Znf_CCHC	-	no_errors	LIN28B	HGNC	ENSG00000187772	241	0	0	112	85	43.15	-	-	-	T	105526463	A	T	105526463	2	4	9	1	0	0	0	0	0	0	0	1	8862	204	8	5		5	LIN28B	6	105526463	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	49586174	105526463	65588604	37	461										
TCP10	0	genome.wustl.edu	37	chr6	167790053	167790053	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cctttccgtcttcagacaccCcccgtctttctgcaccggga	7	18	4	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	167790053	167790053	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.557	p.G186E	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	93	0	0	8	2	20	-	-	-	T	167790053	C	T	167790053	3	4	9	1	0	0	0	0	1	0	0	0	15805	623	22	4	439	4	TCP10	6	167790053	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	62263590	167790053	3325014	38	462										
TCP10	0	genome.wustl.edu	37	chr6	167790110	167790110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtgctggacttctgtcttgaCgtctcccgggaggacttttc	12	11	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	167790110	167790110	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.001	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	93	0	0	13	4	23.53	-	-	-	T	167790110	C	T	167790110	3	4	9	1	0	0	0	0	1	0	0	0	15805	536	19	1	496	1	TCP10	6	167790110	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	57	167790110	3324957	39	463										
HOXA13	0	genome.wustl.edu	37	chr7	27239116	27239116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cggccgaggcgggctgcgcgCacgacttgatggcgttgggg	20	11	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	27239116	27239116	C	G	SNP	HOXA13	ENST00000222753	human	ensembl	69_37n	-1	known	missense	c.581	p.C194S	1.000	pfam_HoxA13_N	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031	22	0	0	12	4	25	-	-	-	G	27239116	C	G	27239116	3	3	9	1	0	0	0	0	1	0	0	0	7342	710	25	4	593	4	HOXA13	7	27239116	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		27239116	131899547	40	464										
ZNF777	0	genome.wustl.edu	37	chr7	149128876	149128876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggggcgcgcgctcactcgccCgtgtgggtccgcaggtggta	18	13	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	149128876	149128876	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	silent	c.2487	p.T829	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	22	0	0	15	25	62.5	-	-	-	T	149128876	C	T	149128876	2	4	9	1	0	0	0	0	0	0	0	1	18243	639	23	1		1	ZNF777	7	149128876	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	121889760	149128876	10009787	41	465										
ASB10	0	genome.wustl.edu	37	chr7	150878405	150878405	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agccttcggcattgcgggcaTcaggacatgccccccgtctt	11	15	2	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	150878405	150878405	T	C	SNP	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	missense	c.860	p.D287G	0.663	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	81	0	0	32	8	20	-	-	-	C	150878405	T	C	150878405	3	2	9	1	0	0	0	0	1	0	0	0	1018	1435	50	5	690	5	ASB10	7	150878405	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	1749529	150878405	8260258	42	466										
FAM86B1	0	genome.wustl.edu	37	chr8	12041205	12041205	+	Frame_Shift_Del	DEL	C	C	-													0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gcttccgcttcccatctgatCccatcccggcctggaaacaa							TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	12041205	12041205	C	-	DEL	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	frame_shift_del	c.903	p.I302fs	0.089	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	108	0	0	26	3	10	-	-	-	-	12041205	C	-	12041205	7	5	9	1	0	1	0	1	0	0	0	0	5689	842	30	0	93	0	FAM86B1	8	12041205	Frame_Shift_Del	DEL	C	TCGA-A1-A0SK-01A-12D-A099-09		12041205	134322817	43	467										
FAM86B1	0	genome.wustl.edu	37	chr8	12042939	12042939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gttgcggacggtaaaggccaCgtagacctcaggagcccgct	14	12	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	12042939	12042939	C	T	SNP	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	missense	c.838	p.V280M	0.784	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	91	0	0	61	10	13.89	-	-	-	T	12042939	C	T	12042939	3	4	9	1	0	0	0	0	1	0	0	0	5689	536	19	1	162	1	FAM86B1	8	12042939	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	1734	12042939	134321083	44	468										
UNC5D	0	genome.wustl.edu	37	chr8	35584005	35584005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagaactgaggacaactggtGtctttggccatttagggggg	15	7	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	35584005	35584005	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1639	p.V547F	0.994	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	286	0	0	204	99	32.67	-	-	-	T	35584005	G	T	35584005	3	4	9	1	0	0	0	0	1	0	0	0	17092	1377	48	4	1677	4	UNC5D	8	35584005	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	23541066	35584005	110780017	45	469										
PLEC	0	genome.wustl.edu	37	chr8	145007427	145007427	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agggtctgcacgtcgttgaaGagcagccggatcatgctatc	13	10	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	145007427	145007427	G	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.1767	p.L589	0.983	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	274	0	0	114	32	21.92	-	-	-	A	145007427	G	A	145007427	2	1	9	1	0	0	0	0	0	0	0	1	12126	929	33	2		2	PLEC	8	145007427	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	109423422	145007427	1356595	46	470										
ACBD5	0	genome.wustl.edu	37	chr10	27520705	27520705	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tttcttcaacatatgcaatcAtggcttcctctttggtcata	5	10	5	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	27520705	27520705	A	C	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	missense	c.341	p.M114R	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	509	0	0	59	61	50.83	-	-	-	C	27520705	A	C	27520705	3	2	9	1	0	0	0	0	1	0	0	0	125	217	8	5	1270	5	ACBD5	10	27520705	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09		27520705	108014042	47	471										
MTPAP	0	genome.wustl.edu	37	chr10	30653319	30653319	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ataacttttttttcttctttTttaatttcttgaccagctct	2	8	4	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	30653319	30653319	T	G	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	37	0	0	178	24	11.88	-	-	-	G	30653319	T	G	30653319	1	3	9	0	1	0	0	0	0	0	0	0	10028	1856	64	5		5	MTPAP	10	30653319	RNA	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	3132614	30653319	104881428	48	472										
MTPAP	0	genome.wustl.edu	37	chr10	30653849	30653849	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtgcccctgcccacgctcacAcccaccccacccccaccccc	4	28	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	30653849	30653849	A	G	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.333	p.G111	0.000	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	31	0	0	68	11	13.1	-	-	-	G	30653849	A	G	30653849	2	3	9	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653849	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	530	30653849	104880898	49	473										
MYPN	0	genome.wustl.edu	37	chr10	69881873	69881873	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agggataatgaagtgaatcaCgccctggaacagcaggaagc	13	8	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	69881873	69881873	C	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	silent	c.678	p.H226	0.015	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	62	0	0	118	84	41.58	-	-	-	T	69881873	C	T	69881873	2	4	9	1	0	0	0	0	0	0	0	1	10170	535	19	1		1	MYPN	10	69881873	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	39228024	69881873	65652874	50	474										
MUC6	0	genome.wustl.edu	37	chr11	1018692	1018693	+	Frame_Shift_Ins	INS	-	-	C													0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctgtggggtggttgggcctgINStggtgcttgctggggttgga							TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	1018692	1018693	-	C	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4109_4108	p.T1370fs	0.006:0.019	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	1365	6	0.44	108	12	10	-	-	-	C	1018693	-	C	1018692	7	5	9	1	0	1	1	0	0	0	0	0	10052	1377	48	0	3222	0	MUC6	11	1018692	Frame_Shift_Ins	INS	-	TCGA-A1-A0SK-01A-12D-A099-09		1018692	133987824	51	475										
OR51A2	0	genome.wustl.edu	37	chr11	4976554	4976554	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	attgaggtgtatctcagaggAttgtggatggctaggaatct	14	4	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	4976554	4976554	A	G	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	silent	c.390	p.N130	0.705	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	163	1	0.61	257	30	10.45	-	-	-	G	4976554	A	G	4976554	2	3	9	1	0	0	0	0	0	0	0	1	11159	330	12	5		5	OR51A2	11	4976554	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	3957862	4976554	130029962	52	476										
AHNAK	0	genome.wustl.edu	37	chr11	62297801	62297801	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctggagcactaatgtcaactTtgggccctttaatgtcaaca	8	10	2	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	62297801	62297801	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.4088	p.K1363R	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	680	0	0	477	308	39.24	-	-	-	C	62297801	T	C	62297801	3	2	9	1	0	0	0	0	1	0	0	0	414	1841	64	5	13704	5	AHNAK	11	62297801	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	57321247	62297801	72708715	53	477										
ATG2A	0	genome.wustl.edu	37	chr11	64673972	64673972	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gagcgaaactgggaaggtccAggtgactgggcagcgggtag	19	7	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	64673972	64673972	A	C	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	missense	c.3017	p.L1006R	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	88	0	0	56	8	12.5	-	-	-	C	64673972	A	C	64673972	3	2	9	1	0	0	0	0	1	0	0	0	1097	188	7	5	2883	5	ATG2A	11	64673972	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	2376171	64673972	70332544	54	478										
GDPD5	0	genome.wustl.edu	37	chr11	75160132	75160132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	caggtagagggcaaacaccaCggtgaagaaggtacagagaa	14	7	0	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	75160132	75160132	C	T	SNP	GDPD5	ENST00000336898	human	ensembl	69_37n	-1	known	missense	c.604	p.V202M	0.608	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD5	HGNC	ENSG00000158555	361	0	0	100	18	15.13	-	-	-	T	75160132	C	T	75160132	3	4	9	1	0	0	0	0	1	0	0	0	6379	536	19	1	1249	1	GDPD5	11	75160132	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	10486160	75160132	59846384	55	479										
ANKRD42	0	genome.wustl.edu	37	chr11	82938872	82938872	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tggaagatggagtaatcaatAttaatgagcgtgctgataat	11	3	1	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	82938872	82938872	A	T	SNP	ANKRD42	ENST00000393392	human	ensembl	69_37n	1	known	missense	c.787	p.I263F	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD42	HGNC	ENSG00000137494	260	0	0	122	31	20.26	-	-	-	T	82938872	A	T	82938872	3	4	9	1	0	0	0	0	1	0	0	0	669	449	16	5	813	5	ANKRD42	11	82938872	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	7778740	82938872	52067644	56	480										
FAT3	0	genome.wustl.edu	37	chr11	92533189	92533189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctacaatagcacagattattTtcacatagatagctcaagtg	6	8	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	92533189	92533189	T	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.7010	p.F2337Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	278	0	0	127	93	42.08	-	-	-	A	92533189	T	A	92533189	3	1	9	1	0	0	0	0	1	0	0	0	5737	1841	64	5	7044	5	FAT3	11	92533189	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	9594317	92533189	42473327	57	481										
TECTA	0	genome.wustl.edu	37	chr11	121008612	121008612	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagactctttccccaagtttGttgtcacagccaagaatgag	8	11	2	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	121008612	121008612	G	C	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.3424	p.V1142L	0.410	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	235	0	0	34	29	46.03	-	-	-	C	121008612	G	C	121008612	3	2	9	1	0	0	0	0	1	0	0	0	15842	1377	48	4	3462	4	TECTA	11	121008612	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	28475423	121008612	13997904	58	482										
DDX11	0	genome.wustl.edu	37	chr12	31254897	31254897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gaagggtggcctgctgggccGtctggctgccaggaagaagg	19	9	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	31254897	31254897	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.2183	p.R728H	0.998	smart_ATP-dep_Helicase_C,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	477	2	0.42	121	19	13.57	-	-	-	A	31254897	G	A	31254897	3	1	9	1	0	0	0	0	1	0	0	0	4374	1145	40	1	2261	1	DDX11	12	31254897	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		31254897	102596998	59	483										
TROAP	0	genome.wustl.edu	37	chr12	49717675	49717675	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	attcaacgccccctcgttgaTtcagcaggccccaggccgaa	9	16	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	49717675	49717675	T	C	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	silent	c.192	p.D64	0.002	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	108	0	0	57	42	42	-	-	-	C	49717675	T	C	49717675	2	2	9	1	0	0	0	0	0	0	0	1	16671	1490	52	5		5	TROAP	12	49717675	Silent	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	18462778	49717675	84134220	60	484										
HNRNPA1	0	genome.wustl.edu	37	chr12	54678053	54678053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	acttttcaggtggctatggcGgttccagcagcagcagtagc	13	10	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	54678053	54678053	G	A	SNP	HNRNPA1	ENST00000340913	human	ensembl	69_37n	1	known	missense	c.1075	p.G359S	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1	HGNC	ENSG00000135486	180	0	0	73	48	39.67	-	-	-	A	54678053	G	A	54678053	3	1	9	1	0	0	0	0	1	0	0	0	7308	1116	39	1	1113	1	HNRNPA1	12	54678053	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	4960378	54678053	79173842	61	485										
GLIPR1	0	genome.wustl.edu	37	chr12	75874811	75874811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tccgatcagaggtgaaaccaAcagccagtgatatgctatac	9	10	1	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	75874811	75874811	A	C	SNP	GLIPR1	ENST00000266659	human	ensembl	69_37n	1	known	missense	c.151	p.T51P	0.037	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278	202	2	0.98	37	24	39.34	-	-	-	C	75874811	A	C	75874811	3	2	9	1	0	0	0	0	1	0	0	0	6493	43	2	5	153	5	GLIPR1	12	75874811	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	21196758	75874811	57977084	62	486										
C1QTNF9	0	genome.wustl.edu	37	chr13	24895393	24895393	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	attggaaagcctggtcccaaAggagaagctggacccacggg	14	10	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	24895393	24895393	A	G	SNP	C1QTNF9	ENST00000332018	human	ensembl	69_37n	1	known	silent	c.489	p.K163	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654	16	0	0	0	44	100	-	-	-	G	24895393	A	G	24895393	2	3	9	1	0	0	0	0	0	0	0	1	1989	69	3	5		5	C1QTNF9	13	24895393	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09		24895393	90274485	63	487										
ARL11	0	genome.wustl.edu	37	chr13	50204651	50204651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gatgatgggcctggactcggCgggcaagaccacgctccttt	14	12	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	50204651	50204651	C	T	SNP	ARL11	ENST00000282026	human	ensembl	69_37n	1	known	missense	c.68	p.A23V	0.995	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL11	HGNC	ENSG00000152213	83	0	0	14	95	86.36	-	-	-	T	50204651	C	T	50204651	3	4	9	1	0	0	0	0	1	0	0	0	929	768	27	1	70	1	ARL11	13	50204651	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	25309258	50204651	64965227	64	488										
OR5AU1	0	genome.wustl.edu	37	chr14	21623196	21623196	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcagcactgggatcaccactGtgtagatgacagcaactgtg	11	10	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	21623196	21623196	G	C	SNP	OR5AU1	ENST00000304418	human	ensembl	69_37n	-1	known	missense	c.989	p.T330R	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	285	0	0	174	39	18.31	-	-	-	C	21623196	G	C	21623196	3	2	9	1	0	0	0	0	1	0	0	0	11220	1377	48	4	102	4	OR5AU1	14	21623196	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		21623196	85726344	65	489										
NFATC4	0	genome.wustl.edu	37	chr14	24846866	24846866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agtgagatcattggccgagaCctgagtggcttccctgcacc	12	12	1	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	24846866	24846866	C	A	SNP	NFATC4	ENST00000556279	human	ensembl	69_37n	1	known	missense	c.2760	p.D920E	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	269	0	0	65	10	13.33	-	-	-	A	24846866	C	A	24846866	3	1	9	1	0	0	0	0	1	0	0	0	10437	506	18	4	2960	4	NFATC4	14	24846866	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	3223670	24846866	82502674	66	490										
STXBP6	0	genome.wustl.edu	37	chr14	25288513	25288513	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aggtcacactgcagaaaggcCgctcgtctagtgtctaggaa	12	10	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	25288513	25288513	C	T	SNP	STXBP6	ENST00000548369	human	ensembl	69_37n	-1	known	silent	c.33	p.A11	0.000	NULL	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952	47	0	0	17	8	32	-	-	-	T	25288513	C	T	25288513	2	4	9	1	0	0	0	0	0	0	0	1	15449	667	23	1		1	STXBP6	14	25288513	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	441647	25288513	82061027	67	491										
DDHD1	0	genome.wustl.edu	37	chr14	53525231	53525231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tgaaaaatatttagtaaccgGttacaaatctctctaggcaa	6	7	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	53525231	53525231	G	C	SNP	DDHD1	ENST00000323669	human	ensembl	69_37n	-1	known	missense	c.1956	p.N652K	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	115	0	0	110	14	11.29	-	-	-	C	53525231	G	C	53525231	3	2	9	1	0	0	0	0	1	0	0	0	4357	1252	44	4	766	4	DDHD1	14	53525231	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	28236718	53525231	53824309	68	492										
RTL1	0	genome.wustl.edu	37	chr14	101347090	101347090	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtcctcatcaggcagctcttCtagccttgcctgctccctgg	9	16	4	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	101347090	101347090	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.4036	p.E1346K	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	98	0	0	52	6	10.34	-	-	-	T	101347090	C	T	101347090	3	4	9	1	0	0	0	0	1	0	0	0	13810	922	32	2	44	2	RTL1	14	101347090	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	47821859	101347090	6002450	69	493										
CHRNB4	0	genome.wustl.edu	37	chr15	78921983	78921983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gatgatgaagtcgtaagtcaCgtccacgtagctggggtctt	13	8	2	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	78921983	78921983	C	T	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.664	p.V222M	0.997	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	873	0	0	137	86	38.57	-	-	-	T	78921983	C	T	78921983	3	4	9	1	0	0	0	0	1	0	0	0	3422	536	19	1	840	1	CHRNB4	15	78921983	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		78921983	23609409	70	494										
RHBDF1	0	genome.wustl.edu	37	chr16	111120	111120	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ccgggcggggaaacgcaccgAgcactcctcctccgaggtct	13	16	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	111120	111120	A	C	SNP	RHBDF1	ENST00000262316	human	ensembl	69_37n	-1	known	missense	c.1555	p.S519A	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384	14	0	0	17	8	32	-	-	-	C	111120	A	C	111120	3	2	9	1	0	0	0	0	1	0	0	0	13403	304	11	5	1044	5	RHBDF1	16	111120	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09		111120	90243633	71	495										
TPSAB1	0	genome.wustl.edu	37	chr16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ccagccacgtccacacggtcAccctgccccctgcctcagag	8	21	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	1291622	1291622	A	G	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	1	known	missense	c.421	p.T141A	0.983	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	90	0	0	83	11	11	-	-	-	G	1291622	A	G	1291622	3	3	9	1	0	0	0	0	1	0	0	0	16519	159	6	5	431	5	TPSAB1	16	1291622	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	1180502	1291622	89063131	72	496										
C16orf59	0	genome.wustl.edu	37	chr16	2512471	2512471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggtggaggcggaggcggggcGcctgcggaaggcctgctcgc	22	11	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	2512471	2512471	G	A	SNP	C16orf59	ENST00000361837	human	ensembl	69_37n	1	known	missense	c.806	p.R269H	0.000	NULL	NULL	-	no_errors	C16orf59	HGNC	ENSG00000162062	82	0	0	43	10	18.87	-	-	-	A	2512471	G	A	2512471	3	1	9	1	0	0	0	0	1	0	0	0	1836	1087	38	1	832	1	C16orf59	16	2512471	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	1220849	2512471	87842282	73	497										
SRRM2	0	genome.wustl.edu	37	chr16	2816674	2816674	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctcgaagtcgctcaccacttGctatccgccgccgctccaga	8	18	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	2816674	2816674	G	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.6145	p.A2049P	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	94	0	0	87	10	10.31	-	-	-	C	2816674	G	C	2816674	3	2	9	1	0	0	0	0	1	0	0	0	15260	1319	46	4	6183	4	SRRM2	16	2816674	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	304203	2816674	87538079	74	498										
CLUAP1	0	genome.wustl.edu	37	chr16	3558440	3558440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aatagtagaggaagatgtcaAcaagttcaagtttgatcttg	10	4	3	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	3558440	3558440	A	G	SNP	CLUAP1	ENST00000576634	human	ensembl	69_37n	1	known	missense	c.371	p.N124S	0.990	pfam_Clusterin-associated_protein-1	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351	332	1	0.3	83	14	14.43	-	-	-	G	3558440	A	G	3558440	3	3	9	1	0	0	0	0	1	0	0	0	3599	43	2	5	385	5	CLUAP1	16	3558440	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	741766	3558440	86796313	75	499										
PALB2	0	genome.wustl.edu	37	chr16	23646404	23646404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagtgggcccagcgggagagCtgactttagttaatgagaga	15	7	0	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	23646404	23646404	C	A	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.1463	p.S488I	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	214	1	0.47	91	13	12.38	-	-	-	A	23646404	C	A	23646404	3	1	9	1	0	0	0	0	1	0	0	0	11479	797	28	4	2137	4	PALB2	16	23646404	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	20087964	23646404	66708349	76	500										
GTF3C1	0	genome.wustl.edu	37	chr16	27480677	27480686	+	Frame_Shift_Del	DEL	ACCACAATGC	ACCACAATGC	-													0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	acttcatctggcaggagttgAccacaatgctgtcgttgggg							TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	ACCACAATGC	ACCACAATGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	27480677	27480686	ACCACAATGC	-	DEL	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	frame_shift_del	c.5009_5000	p.S1667fs	1.000:1.000:1.000:1.000:1.000:0.905:1.000:1.000:1.000:1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	314	0	0	27	8	21.62	-	-	-	-	27480686	ACCACAATGC	-	27480677	7	5	9	1	0	1	0	1	0	0	0	0	6923	275	10	0	1344	0	GTF3C1	16	27480677	Frame_Shift_Del	DEL	ACCACAATGC	TCGA-A1-A0SK-01A-12D-A099-09	3834273	27480677	62874076	77	501										
NLRC5	0	genome.wustl.edu	37	chr16	57095775	57095775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctgtccatctgtcccagagaCtccacaaggcacacagagaa	8	14	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	57095775	57095775	C	T	SNP	NLRC5	ENST00000538805	human	ensembl	69_37n	1	putative	missense	c.3412	p.L1138F	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	10	0	0	2	4	66.67	-	-	-	T	57095775	C	T	57095775	3	4	9	1	0	0	0	0	1	0	0	0	10542	580	20	4		4	NLRC5	16	57095775	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	29615098	57095775	33258978	78	502										
HYDIN	0	genome.wustl.edu	37	chr16	71163693	71163693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcaaaaaactcatcagtctcAtccttctcctctttgatcag	3	13	7	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	71163693	71163693	A	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.1077	p.D359	0.002	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	231	0	0	64	15	18.99	-	-	-	G	71163693	A	G	71163693	2	3	9	1	0	0	0	0	0	0	0	1	7521	214	8	5		5	HYDIN	16	71163693	Silent	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	14067918	71163693	19191060	79	503										
CLEC18B	0	genome.wustl.edu	37	chr16	74446051	74446051	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gggccctggggcaggactcaCtggcacactgggctcccccg	15	16	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	74446051	74446051	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	splice_site	c.877+1	e7+1	1.000	-	-	-	no_errors	CLEC18B	HGNC	ENSG00000140839	17	0	0	27	8	22.86	-	-	-	T	74446051	C	T	74446051	5	4	9	1	0	0	0	0	0	0	1	0	3533	579	20	4	517	4	CLEC18B	16	74446051	Splice_Site	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	3282358	74446051	15908702	80	504										
SHPK	0	genome.wustl.edu	37	chr17	3518763	3518763	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gactggggccgtagggtctgGagtctgtgcaggctggaatc	18	8	2	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	3518763	3518763	G	C	SNP	SHPK	ENST00000225519	human	ensembl	69_37n	-1	known	missense	c.892	p.P298A	1.000	NULL	pfam_Carb_kinase_FGGY_N	-	no_errors	SHPK	HGNC	ENSG00000197417	282	0	0	23	80	77.67	-	-	-	C	3518763	G	C	3518763	3	2	9	1	0	0	0	0	1	0	0	0	14379	1174	41	2	552	2	SHPK	17	3518763	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		3518763	77676447	81	505										
CAMTA2	0	genome.wustl.edu	37	chr17	4883751	4883751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aagaagaggaagaagatgggGaggtgtgtgccttggggagc	20	3	0	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	4883751	4883751	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.935	p.S312F	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	129	0	0	29	57	66.28	-	-	-	A	4883751	G	A	4883751	3	1	9	1	0	0	0	0	1	0	0	0	2639	1174	41	2	2852	2	CAMTA2	17	4883751	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	1364988	4883751	76311459	82	506										
TP53	0	genome.wustl.edu	37	chr17	7578532	7578532	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcttggccagttggcaaaacAtcttgttgagggcaggggag	15	7	2	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	7578532	7578532	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.398	p.M133K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	204	0	0	3	38	92.68	-	-	-	T	7578532	A	T	7578532	3	4	9	1	0	0	0	0	1	0	0	0	16477	217	8	5	900	5	TP53	17	7578532	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	2694781	7578532	73616678	83	507										
KRTAP9-9	0	genome.wustl.edu	37	chr17	39411711	39411711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctggaagcccaccactgtgaCcacctgcagcagcacaccct	8	18	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	39411711	39411711	C	G	SNP	KRTAP9-9	ENST00000394008	human	ensembl	69_37n	1	known	missense	c.74	p.T25S	0.130	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083	236	0	0	212	29	12.03	-	-	-	G	39411711	C	G	39411711	3	3	9	1	0	0	0	0	1	0	0	0	8631	507	18	4	76	4	KRTAP9-9	17	39411711	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	31833179	39411711	41783499	84	508										
BRCA1	0	genome.wustl.edu	37	chr17	41245985	41245985	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtcttttgaactgccaaatcTgctttcttgataaaatcctc	5	10	3	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	41245985	41245985	T	C	SNP	BRCA1	ENST00000412061	human	ensembl	69_37n	-1	known	missense	c.914	p.Q305R	0.567	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRCA1	HGNC	ENSG00000012048	96	0	0	41	131	76.16	-	-	-	C	41245985	T	C	41245985	3	2	9	1	0	0	0	0	1	0	0	0	1506	1567	55	5	4154	5	BRCA1	17	41245985	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	1834274	41245985	39949225	85	509										
LAMA3	0	genome.wustl.edu	37	chr18	21534511	21534511	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctgtgtggaaatcattctttGgctgtctgaggaatattcat	10	6	4	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	18	21534511	21534511	G	A	SNP	LAMA3	ENST00000588004	human	ensembl	69_37n	1	putative	nonsense	c.302	p.W101*	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LAMA3	HGNC	ENSG00000053747	256	0	0	78	41	34.17	-	-	-	A	21534511	G	A	21534511	4	1	9	1	0	0	0	0	0	1	0	0	8661	1348	47	4	10374	4	LAMA3	18	21534511	Nonsense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09		21534511	56542737	86	510										
SPPL2B	0	genome.wustl.edu	37	chr19	2339888	2339888	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggacgaggcggtggacgtgaCgccggtgatgacctgcgtgt	19	9	0	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	2339888	2339888	C	T	SNP	SPPL2B	ENST00000382189	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206	525	1	0.19	15	28	65.12	-	-	-	T	2339888	C	T	2339888	1	4	9	0	1	0	0	0	0	0	0	0	15180	536	19	1		1	SPPL2B	19	2339888	RNA	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		2339888	56789095	87	511										
COPE	0	genome.wustl.edu	37	chr19	19030117	19030117	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cgaacagctcgtctacctccCcggagccgccggaggccggg	14	17	1	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	19030117	19030117	C	G	SNP	COPE	ENST00000262812	human	ensembl	69_37n	-1	known	missense	c.41	p.G14A	0.999	pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	74	0	0	61	20	24.69	-	-	-	G	19030117	C	G	19030117	3	3	9	1	0	0	0	0	1	0	0	0	3760	623	22	4	925	4	COPE	19	19030117	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	16690229	19030117	40098866	88	512										
PEPD	0	genome.wustl.edu	37	chr19	33892709	33892709	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tggtctgcagtgaacttgccGttggcgggaaaggagcaggt	17	7	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	33892709	33892709	G	A	SNP	PEPD	ENST00000244137	human	ensembl	69_37n	-1	known	silent	c.885	p.N295	0.944	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299	340	0	0	76	48	38.71	-	-	-	A	33892709	G	A	33892709	2	1	9	1	0	0	0	0	0	0	0	1	11801	1136	40	1		1	PEPD	19	33892709	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	14862592	33892709	25236274	89	513										
LSR	0	genome.wustl.edu	37	chr19	35749935	35749935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agcccaggacctccaggggaAcaatgaggcctacgcagagc	13	13	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	35749935	35749935	A	G	SNP	LSR	ENST00000361790	human	ensembl	69_37n	1	known	missense	c.686	p.N229S	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	327	0	0	124	18	12.68	-	-	-	G	35749935	A	G	35749935	3	3	9	1	0	0	0	0	1	0	0	0	9130	43	2	5	696	5	LSR	19	35749935	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	1857226	35749935	23379048	90	514										
SERTAD3	0	genome.wustl.edu	37	chr19	40947651	40947651	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aaggggagtcactggattctGagggggctcagtcccatcca	14	10	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	40947651	40947651	G	C	SNP	SERTAD3	ENST00000322354	human	ensembl	69_37n	-1	known	missense	c.337	p.Q113E	0.844	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD3	HGNC	ENSG00000167565	120	0	0	75	10	11.76	-	-	-	C	40947651	G	C	40947651	3	2	9	1	0	0	0	0	1	0	0	0	14210	1299	45	2	257	2	SERTAD3	19	40947651	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	5197716	40947651	18181332	91	515										
ZNF234	0	genome.wustl.edu	37	chr19	44660912	44660912	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cagtcgtagatcaacacttaCtgtacattgcaaattacact	5	10	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	44660912	44660912	C	G	SNP	ZNF234	ENST00000426739	human	ensembl	69_37n	1	known	missense	c.743	p.T248S	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	327	0	0	587	74	11.2	-	-	-	G	44660912	C	G	44660912	3	3	9	1	0	0	0	0	1	0	0	0	17883	565	20	4	757	4	ZNF234	19	44660912	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	3713261	44660912	14468071	92	516										
SIGLEC11	0	genome.wustl.edu	37	chr19	50462687	50462687	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gctcggcaggtgtagcgcccTgaatccccggcccttacccc	11	18	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	50462687	50462687	T	C	SNP	SIGLEC11	ENST00000426971	human	ensembl	69_37n	-1	novel	missense	c.956	p.Q319R	0.137	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIGLEC11	HGNC	ENSG00000161640	27	0	0	22	13	36.11	-	-	-	C	50462687	T	C	50462687	3	2	9	1	0	0	0	0	1	0	0	0	14396	1567	55	5	1137	5	SIGLEC11	19	50462687	Missense_Mutation	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	5801775	50462687	8666296	93	517										
LILRB3	0	genome.wustl.edu	37	chr19	54725907	54725907	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	cttcatcagaacaaaatggtGatatcccttctgtgagccac	7	11	3	3			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	54725907	54725907	G	C	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.451	p.H151D	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	79	0	0	88	10	10.2	-	-	-	C	54725907	G	C	54725907	3	2	9	1	0	0	0	0	1	0	0	0	8847	1290	45	2	1487	2	LILRB3	19	54725907	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	4263220	54725907	4403076	94	518										
ZNF417	0	genome.wustl.edu	37	chr19	58421080	58421080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ctgtcttctctacagcagctGcttcttggcacaatcctgaa	7	13	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	58421080	58421080	G	T	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.566	p.A189E	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	98	0	0	65	64	49.61	-	-	-	T	58421080	G	T	58421080	3	4	9	1	0	0	0	0	1	0	0	0	17990	1319	46	4	1165	4	ZNF417	19	58421080	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	3695173	58421080	707903	95	519										
RALY	0	genome.wustl.edu	37	chr20	32664862	32664862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	aagaagggtgatggaggtggCgccggcggcggcggcggtgg	24	7	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	32664862	32664862	C	T	SNP	RALY	ENST00000246194	human	ensembl	69_37n	1	known	silent	c.687	p.G229	0.049	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	32	0	0	44	8	15.09	-	-	-	T	32664862	C	T	32664862	2	4	9	1	0	0	0	0	0	0	0	1	13102	755	27	1		1	RALY	20	32664862	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		32664862	30360658	96	520										
LAMA5	0	genome.wustl.edu	37	chr20	60893617	60893617	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	caggtccatgaggccggcctCgtgctgggccagccggtcgc	16	15	0	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	60893617	60893617	C	G	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.7132	p.E2378Q	0.005	pfam_Laminin_I	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	63	0	0	34	14	29.17	-	-	-	G	60893617	C	G	60893617	3	3	9	1	0	0	0	0	1	0	0	0	8663	893	31	3	4067	3	LAMA5	20	60893617	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	28228755	60893617	2131903	97	521										
COL20A1	0	genome.wustl.edu	37	chr20	61956698	61956698	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcgccggggacccagggccgTgcagtccaggggcctgtggt	18	13	0	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	61956698	61956698	T	C	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	silent	c.3372	p.R1124	0.000	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	82	0	0	42	7	14	-	-	-	C	61956698	T	C	61956698	2	2	9	1	0	0	0	0	0	0	0	1	3709	1711	59	5		5	COL20A1	20	61956698	Silent	SNP	T	TCGA-A1-A0SK-01A-12D-A099-09	1063081	61956698	1068822	98	522										
CECR2	0	genome.wustl.edu	37	chr22	18022211	18022211	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ggcccagatgagaagccccaCctggggccaggaccctctca	12	16	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	18022211	18022211	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	silent	c.2313	p.H771	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	87	0	0	103	79	43.41	-	-	-	T	18022211	C	T	18022211	2	4	9	1	0	0	0	0	0	0	0	1	3235	506	18	4		4	CECR2	22	18022211	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		18022211	33282355	99	523										
COMT	0	genome.wustl.edu	37	chr22	19951897	19951897	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcagcctcagcctctccaaaGagccaggcattccagtagag	9	14	3	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	19951897	19951897	G	C	SNP	COMT	ENST00000403184	human	ensembl	69_37n	1	putative	missense	c.690	p.K230N	0.000	pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010	51	0	0	45	7	13.46	-	-	-	C	19951897	G	C	19951897	3	2	9	1	0	0	0	0	1	0	0	0	3755	957	33	2		2	COMT	22	19951897	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	1929686	19951897	31352669	100	524										
MED15	0	genome.wustl.edu	37	chr22	20905620	20905620	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtctgaatctgccttgcaggAtgggcttcagctcggtgcca	13	11	3	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	20905620	20905620	A	G	SNP	MED15	ENST00000420849	human	ensembl	69_37n	1	known	missense	c.1	p.M1V	0.000	NULL	NULL	-	no_errors	MED15	HGNC	ENSG00000099917	146	0	0	44	6	11.76	-	-	-	G	20905620	A	G	20905620	3	3	9	1	0	0	0	0	1	0	0	0	9504	348	12	5		5	MED15	22	20905620	Missense_Mutation	SNP	A	TCGA-A1-A0SK-01A-12D-A099-09	953723	20905620	30398946	101	525										
LARGE	0	genome.wustl.edu	37	chr22	34157362	34157362	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tggcttccattcttaccttcGaagctcccagaaaacaggta	7	12	1	1			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	34157362	34157362	G	T	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.102	p.F34L	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	308	0	0	34	25	42.37	-	-	-	T	34157362	G	T	34157362	3	4	9	1	0	0	0	0	1	0	0	0	8681	1049	37	3	2224	3	LARGE	22	34157362	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	13251742	34157362	17147204	102	526										
NCAPH2	0	genome.wustl.edu	37	chr22	50960792	50960792	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	gtggctgagcagtggctgcgGcctgcagaggaggaccacct	17	11	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	50960792	50960792	G	T	SNP	NCAPH2	ENST00000299821	human	ensembl	69_37n	1	known	silent	c.1254	p.R418	0.986	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	96	0	0	91	15	14.15	-	-	-	T	50960792	G	T	50960792	2	4	9	1	0	0	0	0	0	0	0	1	10282	1190	42	4		4	NCAPH2	22	50960792	Silent	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	16803430	50960792	343774	103	527										
SHROOM2	0	genome.wustl.edu	37	chrX	9914857	9914857	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	agcctcgcggactatgagcaCttcgtgaagatgaagtcggc	13	10	0	4			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	9914857	9914857	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	silent	c.4731	p.H1577	1.000	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	159	0	0	106	80	43.01	-	-	-	T	9914857	C	T	9914857	2	4	9	1	0	0	0	0	0	0	0	1	14383	564	20	4		4	SHROOM2	23	9914857	Silent	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09		9914857	145355703	104	528										
PJA1	0	genome.wustl.edu	37	chrX	68383057	68383057	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tcctgttggattgggccataCaggcttgctagattcctgac	11	10	0	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	68383057	68383057	C	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.25	p.V9L	0.491	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	384	2	0.52	333	80	19.37	-	-	-	A	68383057	C	A	68383057	3	1	9	1	0	0	0	0	1	0	0	0	12035	478	17	4	1910	4	PJA1	23	68383057	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	58468200	68383057	86887503	105	529										
TEX11	0	genome.wustl.edu	37	chrX	69749698	69749698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tccttacctgagtttcatagCtttccttgaaggaggtaagg	10	8	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	69749698	69749698	C	T	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	missense	c.2717	p.S906N	0.000	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	367	0	0	106	20	15.87	-	-	-	T	69749698	C	T	69749698	3	4	9	1	0	0	0	0	1	0	0	0	15869	797	28	4	113	4	TEX11	23	69749698	Missense_Mutation	SNP	C	TCGA-A1-A0SK-01A-12D-A099-09	1366641	69749698	85520862	106	530										
SLITRK4	0	genome.wustl.edu	37	chrX	142716453	142716453	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	tgctcctcaaggacctgtagGtagtcaggggaactctgcag	13	10	3	0			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142716453	142716453	G	C	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	nonsense	c.2472	p.Y824*	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	238	0	0	127	73	36.5	-	-	-	C	142716453	G	C	142716453	4	2	9	1	0	0	0	0	0	1	0	0	14834	1256	44	4	45	4	SLITRK4	23	142716453	Nonsense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	72966755	142716453	12554107	107	531										
SLITRK4	0	genome.wustl.edu	37	chrX	142718044	142718044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	8	0.81054305305935	1.08967500719011	1.94098360655738	0.757457017193123	1	1	0	ttactaatctgtgtaaagatGtttgggtagtgtgaccattg	11	4	1	2			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142718044	142718044	G	A	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.881	p.T294I	0.992	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	297	0	0	97	62	38.51	-	-	-	A	142718044	G	A	142718044	3	1	9	1	0	0	0	0	1	0	0	0	14834	1377	48	4	1636	4	SLITRK4	23	142718044	Missense_Mutation	SNP	G	TCGA-A1-A0SK-01A-12D-A099-09	1591	142718044	12552516	108	532										
AHDC1	0	genome.wustl.edu	37	chr1	27875711	27875711	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ctttgtccggccccatagccGccgtactggggcaggtaggt							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	1	27875711	27875711	G	-	DEL	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	frame_shift_del	c.2916	p.G973fs	0.041	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	22	0	0	4	2	33.33	-	-	-	-	27875711	G	-	27875711	7	5	10	1	0	1	0	1	0	0	0	0	412	1074	38	0	1899	0	AHDC1	1	27875711	Frame_Shift_Del	DEL	G	TCGA-A1-A0SM-01A-11D-A099-09		27875711	221374910	1	533										
DCST1	0	genome.wustl.edu	37	chr1	155020578	155020578	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctacaatgacctattgaagAaaagagcagccttcaccaaa	6	10	2	4			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	1	155020578	155020578	A	T	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	nonsense	c.1801	p.K601*	1.000	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	108	0	0	157	20	11.24	-	-	-	T	155020578	A	T	155020578	4	4	10	1	0	0	0	0	0	1	0	0	4333	247	9	5	1859	5	DCST1	1	155020578	Nonsense_Mutation	SNP	A	TCGA-A1-A0SM-01A-11D-A099-09	127144867	155020578	94230043	2	534										
ATP1A4	0	genome.wustl.edu	37	chr1	160144388	160144388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggagccgttgtggccgtgaCaggtgacggggtgaacgact	19	8	0	3			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	1	160144388	160144388	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.2162	p.T721I	0.999	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	106	1	0.93	31	35	53.03	-	-	-	T	160144388	C	T	160144388	3	4	10	1	0	0	0	0	1	0	0	0	1135	478	17	4	2220	4	ATP1A4	1	160144388	Missense_Mutation	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	5123810	160144388	89106233	3	535										
ID2	0	genome.wustl.edu	37	chr2	8822549	8822549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctggactcgcatcccactaTtgtcagcctgcatcaccaga	7	16	2	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	2	8822549	8822549	T	C	SNP	ID2	ENST00000234091	human	ensembl	69_37n	1	known	missense	c.254	p.I85T	0.814	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ID2	HGNC	ENSG00000115738	36	0	0	7	4	36.36	-	-	-	C	8822549	T	C	8822549	3	2	10	1	0	0	0	0	1	0	0	0	7544	1493	52	5	256	5	ID2	2	8822549	Missense_Mutation	SNP	T	TCGA-A1-A0SM-01A-11D-A099-09		8822549	234376824	4	536										
TBC1D8	0	genome.wustl.edu	37	chr2	101648789	101648789	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacacacagcaaccaacagcCagaaggcttcctcctccttg	6	17	0	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	2	101648789	101648789	C	T	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	nonsense	c.1877	p.W626*	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	100	0	0	23	4	14.81	-	-	-	T	101648789	C	T	101648789	4	4	10	1	0	0	0	0	0	1	0	0	15720	595	21	4	1630	4	TBC1D8	2	101648789	Nonsense_Mutation	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	92826240	101648789	141550584	5	537										
KCNH7	0	genome.wustl.edu	37	chr2	163256927	163256928	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	agacaaatgtctgcttgtaaINSgcattctgggaaacccttta							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	2	163256927	163256928	-	T	INS	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2179_2178	p.L726fs	1.000:0.978	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	135	0	0	20	3	13.04	-	-	-	T	163256928	-	T	163256927	7	5	10	1	0	1	1	0	0	0	0	0	8091	69	3	0	1439	0	KCNH7	2	163256927	Frame_Shift_Ins	INS	-	TCGA-A1-A0SM-01A-11D-A099-09	61608138	163256927	79942446	6	538										
CP	0	genome.wustl.edu	37	chr3	148896320	148896320	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcattctcatcaaaaactagAaacagaagggcaaattccag	6	9	3	2			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	3	148896320	148896320	A	G	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	silent	c.2760	p.F920	0.994	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	229	0	0	190	71	27.2	-	-	-	G	148896320	A	G	148896320	2	3	10	1	0	0	0	0	0	0	0	1	3817	243	9	5		5	CP	3	148896320	Silent	SNP	A	TCGA-A1-A0SM-01A-11D-A099-09		148896320	49126110	7	539										
LPP	0	genome.wustl.edu	37	chr3	188584034	188584034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttccaagcccatcatggagcGgattctccgagccaccggga	11	14	2	0			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	3	188584034	188584034	G	A	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.1457	p.R486Q	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	156	0	0	24	11	31.43	-	-	-	A	188584034	G	A	188584034	3	1	10	1	0	0	0	0	1	0	0	0	8989	1116	39	1	1483	1	LPP	3	188584034	Missense_Mutation	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09	39687714	188584034	9438396	8	540										
MUC20	0	genome.wustl.edu	37	chr3	195452668	195452668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccccatccagtcatcaccccCtcatggtccccgggatctga	7	19	4	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	3	195452668	195452668	C	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	silent	c.1194	p.P398	0.004	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	50	0	0	12	6	33.33	-	-	-	G	195452668	C	G	195452668	2	3	10	1	0	0	0	0	0	0	0	1	10048	695	24	4		4	MUC20	3	195452668	Silent	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	6868634	195452668	2569762	9	541										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32552060	32552061	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	tcgctgtcgaagcgcacggaINSctcctcctggttatagaagt							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	6	32552060	32552061	-	G	INS	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	frame_shift_ins	c.196_195	p.S65fs	0.000:0.881	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	53	0	0	9	2	18.18	-	-	-	G	32552061	-	G	32552060	7	5	10	1	0	1	1	0	0	0	0	0	7259	275	10	0	624	0	HLA-DRB1	6	32552060	Frame_Shift_Ins	INS	-	TCGA-A1-A0SM-01A-11D-A099-09		32552060	138563007	10	542										
TCTE1	0	genome.wustl.edu	37	chr6	44250253	44250253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaggcttcgaattatgatgCgtgccttgtcatcatccacc	9	11	2	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	6	44250253	44250253	C	T	SNP	TCTE1	ENST00000371505	human	ensembl	69_37n	-1	known	missense	c.890	p.R297H	0.997	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221	111	0	0	22	8	26.67	-	-	-	T	44250253	C	T	44250253	3	4	10	1	0	0	0	0	1	0	0	0	15812	768	27	1	623	1	TCTE1	6	44250253	Missense_Mutation	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	11698193	44250253	126864814	11	543										
ZNF804B	0	genome.wustl.edu	37	chr7	88963520	88963521	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	atccaaattccagaatagagINSaacagagaaaaatctttaga							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	7	88963520	88963521	-	A	INS	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	frame_shift_ins	c.1224_1225	p.N408fs	0.001:0.001	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	65	0	0	14	2	12.5	-	-	-	A	88963521	-	A	88963520	7	5	10	1	0	1	1	0	0	0	0	0	18264	933	33	0	1238	0	ZNF804B	7	88963520	Frame_Shift_Ins	INS	-	TCGA-A1-A0SM-01A-11D-A099-09		88963520	70175143	12	544										
STEAP2	0	genome.wustl.edu	37	chr7	89854877	89854879	+	In_Frame_Del	DEL	GCC	GCC	-													0	0	1	0	0	0	1	1	0	ttcagttaggacctaaggatGccagccggcaggtatgtatt							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	7	89854877	89854879	GCC	-	DEL	STEAP2	ENST00000287908	human	ensembl	69_37n	1	known	in_frame_del	c.481_483	p.A161in_frame_del	1.000:1.000:1.000	NULL	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP2	HGNC	ENSG00000157214	39	0	0	13	3	17.65	-	-	-	-	89854879	GCC	-	89854877	7	5	10	1	0	1	0	1	0	0	0	0	15369	1319	46	0	483	0	STEAP2	7	89854877	In_Frame_Del	DEL	GCC	TCGA-A1-A0SM-01A-11D-A099-09	891357	89854877	69283786	13	545										
ZAN	0	genome.wustl.edu	37	chr7	100349612	100349612	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccctcagaaaaacccaccatCctcacagaaaaacccaccat	2	18	2	2			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	7	100349612	100349612	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.1884	p.I628	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	887	0	0	540	259	32.42	-	-	-	T	100349612	C	T	100349612	2	4	10	1	0	0	0	0	0	0	0	1	17610	845	30	2		2	ZAN	7	100349612	Silent	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	10494735	100349612	58789051	14	546										
CSMD1	0	genome.wustl.edu	37	chr8	3076793	3076793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	atacctttaaattcaatggcGaaccctgaaaggcccacgga	8	11	1	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	8	3076793	3076793	G	A	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.3097	p.R1033C	0.975	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	110	0	0	38	15	28.3	-	-	-	A	3076793	G	A	3076793	3	1	10	1	0	0	0	0	1	0	0	0	3976	1049	37	1	6206	1	CSMD1	8	3076793	Missense_Mutation	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09		3076793	143287229	15	547										
EGR3	0	genome.wustl.edu	37	chr8	22548460	22548460	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ttgtctttgaatgccttgatGgtctccagaggggtaatagg							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	8	22548460	22548460	G	-	DEL	EGR3	ENST00000317216	human	ensembl	69_37n	-1	known	frame_shift_del	c.690	p.I231fs	1.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388	77	0	0	11	2	15.38	-	-	-	-	22548460	G	-	22548460	7	5	10	1	0	1	0	1	0	0	0	0	5008	1335	47	0	477	0	EGR3	8	22548460	Frame_Shift_Del	DEL	G	TCGA-A1-A0SM-01A-11D-A099-09	19471667	22548460	123815562	16	548										
IKBKB	0	genome.wustl.edu	37	chr8	42151033	42151033	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	ccttgctgagtgacattggtAaatcccagtcccggaattca							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	8	42151033	42151033	A	-	DEL	IKBKB	ENST00000342222	human	ensembl	69_37n	1	known	frame_shift_del	c.391	p.K131fs	1.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	141	0	0	45	18	28.12	-	-	-	-	42151033	A	-	42151033	7	5	10	1	0	1	0	1	0	0	0	0	7665	377	13	0		0	IKBKB	8	42151033	Frame_Shift_Del	DEL	A	TCGA-A1-A0SM-01A-11D-A099-09	19602573	42151033	104212989	17	549										
IKBKB	0	genome.wustl.edu	37	chr8	42179428	42179428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttagagaggagcaagcaaGggagctgtacaggagactaa	14	5	0	2			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	8	42179428	42179428	G	T	SNP	IKBKB	ENST00000520810	human	ensembl	69_37n	1	known	missense	c.1703	p.R568M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	258	0	0	178	73	29.08	-	-	-	T	42179428	G	T	42179428	3	4	10	1	0	0	0	0	1	0	0	0	7665	1000	35	4	1765	4	IKBKB	8	42179428	Missense_Mutation	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09	28395	42179428	104184594	18	550										
TSNARE1	0	genome.wustl.edu	37	chr8	143436021	143436021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ggggctgacagccttgtctcGaaggtcccccgaaagggcca	14	13	1	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	8	143436021	143436021	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	69_37n	-1	known	missense	c.65	p.S22L	0.030	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	36	0	0	11	6	35.29	-	-	-	A	143436021	G	A	143436021	3	1	10	1	0	0	0	0	1	0	0	0	16726	1059	37	1	1524	1	TSNARE1	8	143436021	Missense_Mutation	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09	101256593	143436021	2928001	19	551										
RRP12	0	genome.wustl.edu	37	chr10	99130258	99130258	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aaagcatggcccatctccacGagcagtgcaaaagcgttctt	9	12	2	0			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	10	99130258	99130258	G	A	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	silent	c.2643	p.L881	1.000	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	65	0	0	23	9	28.12	-	-	-	A	99130258	G	A	99130258	2	1	10	1	0	0	0	0	0	0	0	1	13772	1045	37	1		1	RRP12	10	99130258	Silent	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09		99130258	36404489	20	552										
ODZ4	0	genome.wustl.edu	37	chr11	78780799	78780799	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attcctcggcctcctgcggcAcaatgtccttgacgcggctg	11	15	0	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	11	78780799	78780799	A	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.191	p.V64E	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	55	0	0	50	7	12.28	-	-	-	T	78780799	A	T	78780799	3	4	10	1	0	0	0	0	1	0	0	0	10910	159	6	5	8238	5	ODZ4	11	78780799	Missense_Mutation	SNP	A	TCGA-A1-A0SM-01A-11D-A099-09		78780799	56225717	21	553										
CLEC12A	0	genome.wustl.edu	37	chr12	10134654	10134654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagagtagatcatatgactaTtggctgggattatctcctga	10	7	2	4			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	12	10134654	10134654	T	C	SNP	CLEC12A	ENST00000355690	human	ensembl	69_37n	1	known	silent	c.597	p.Y199	0.826	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322	199	0	0	89	23	20.54	-	-	-	C	10134654	T	C	10134654	2	2	10	1	0	0	0	0	0	0	0	1	3527	1500	52	5		5	CLEC12A	12	10134654	Silent	SNP	T	TCGA-A1-A0SM-01A-11D-A099-09		10134654	123717241	22	554										
ESYT1	0	genome.wustl.edu	37	chr12	56532266	56532266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctatccatctatatggagCgggcagaggacctcccggtg	13	11	1	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	12	56532266	56532266	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	missense	c.2446	p.R816W	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	62	0	0	14	5	26.32	-	-	-	T	56532266	C	T	56532266	3	4	10	1	0	0	0	0	1	0	0	0	5301	759	27	1	2532	1	ESYT1	12	56532266	Missense_Mutation	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	46397612	56532266	77319629	23	555										
GOLGA3	0	genome.wustl.edu	37	chr12	133393258	133393258	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccacacctggagaggcatCagggcccactgggcttgtgg	15	12	1	1			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	12	133393258	133393258	C	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.274	p.D92Y	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	101	0	0	18	9	33.33	-	-	-	A	133393258	C	A	133393258	3	1	10	1	0	0	0	0	1	0	0	0	6606	826	29	2	4448	2	GOLGA3	12	133393258	Missense_Mutation	SNP	C	TCGA-A1-A0SM-01A-11D-A099-09	76860992	133393258	458637	24	556										
HEATR4	0	genome.wustl.edu	37	chr14	73989691	73989691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttggctcttgcggtgtagacGgtactgtgagctgaagaaga	15	6	1	5			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	14	73989691	73989691	G	A	SNP	HEATR4	ENST00000334988	human	ensembl	69_37n	-1	known	missense	c.166	p.R56C	0.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	51	0	0	18	5	21.74	-	-	-	A	73989691	G	A	73989691	3	1	10	1	0	0	0	0	1	0	0	0	7081	1116	39	1	2978	1	HEATR4	14	73989691	Missense_Mutation	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09		73989691	33359849	25	557										
SEZ6L2	0	genome.wustl.edu	37	chr16	29888138	29888138	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	cactggcaagtgagaatgtcGgagcctagcagctcgtagcc							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	16	29888138	29888138	G	-	DEL	SEZ6L2	ENST00000308713	human	ensembl	69_37n	-1	known	frame_shift_del	c.2043	p.D682fs	0.610	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938	20	0	0	1	2	66.67	-	-	-	-	29888138	G	-	29888138	7	5	10	1	0	1	0	1	0	0	0	0	14232	1103	39	0	756	0	SEZ6L2	16	29888138	Frame_Shift_Del	DEL	G	TCGA-A1-A0SM-01A-11D-A099-09		29888138	60466615	26	558										
ZNF229	0	genome.wustl.edu	37	chr19	44936532	44936532	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacagccacgtccttgaagcTcaatggctcctaaaatgaaa	7	12	1	2			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	19	44936532	44936532	T	G	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.103	p.S35R	0.640	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	161	0	0	54	24	30.77	-	-	-	G	44936532	T	G	44936532	3	3	10	1	0	0	0	0	1	0	0	0	17878	1551	54	5	2382	5	ZNF229	19	44936532	Missense_Mutation	SNP	T	TCGA-A1-A0SM-01A-11D-A099-09		44936532	14192451	27	559										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325455	55325455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatgctgagcccagagcgttGtctcctgcccatgagcacca	10	14	1	3			TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	19	55325455	55325455	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	24	0	0	18	4	18.18	-	-	-	A	55325455	G	A	55325455	2	1	10	1	0	0	0	0	0	0	0	1	8371	1368	48	4		4	KIR2DL4	19	55325455	Silent	SNP	G	TCGA-A1-A0SM-01A-11D-A099-09	10388923	55325455	3803528	28	560										
SMARCA1	0	genome.wustl.edu	37	chrX	128614761	128614761	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	tgggaaaaattgaaaatcctGaacatttggctgttttggag							TCGA-A1-A0SM-01A-11D-A099-09	TCGA-A1-A0SM-10A-02D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2057b341-ff5c-45ef-83bb-005e29b2e740	e9a6364d-c86f-4656-9089-d0a59a87bd73	X	128614761	128614761	G	-	DEL	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	frame_shift_del	c.2359	p.Q787fs	1.000	pfam_ATPase_nucl-remodel_HAND-dom,superfamily_ATPase_nucl-remodel_HAND-dom	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	106	0	0	60	79	55.63	-	-	-	-	128614761	G	-	128614761	7	5	10	1	0	1	0	1	0	0	0	0	14857	1299	45	0	829	0	SMARCA1	23	128614761	Frame_Shift_Del	DEL	G	TCGA-A1-A0SM-01A-11D-A099-09		128614761	26655799	29	561										
IPP	0	genome.wustl.edu	37	chr1	46180091	46180091	+	Frame_Shift_Del	DEL	G	G	-													0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	atcatagacttcaaaagaacGaagttctattccttcattgc							TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	46180091	46180091	G	-	DEL	IPP	ENST00000396478	human	ensembl	69_37n	-1	known	frame_shift_del	c.1357	p.R453fs	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IPP	HGNC	ENSG00000197429	36	0	0	21	3	12.5	-	-	-	-	46180091	G	-	46180091	7	5	11	1	0	1	0	1	0	0	0	0	7854	1058	37	0	507	0	IPP	1	46180091	Frame_Shift_Del	DEL	G	TCGA-A1-A0SN-01A-11D-A142-09		46180091	203070530	1	562										
WDR47	0	genome.wustl.edu	37	chr1	109538271	109538271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	atccaggattacgaggagtgCttgtatgaatatttgaagca	11	5	0	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	109538271	109538271	C	T	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.1646	p.S549N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	100	0	0	34	13	27.66	-	-	-	T	109538271	C	T	109538271	3	4	11	1	0	0	0	0	1	0	0	0	17397	797	28	4	1169	4	WDR47	1	109538271	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	63358180	109538271	139712350	2	563										
NPR1	0	genome.wustl.edu	37	chr1	153659695	153659695	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	gggcatgctgtttctacacaAtggggctatctgttcccatg	11	10	2	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	153659695	153659695	A	T	SNP	NPR1	ENST00000368680	human	ensembl	69_37n	1	known	missense	c.1955	p.N652I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	43	0	0	82	11	11.83	-	-	-	T	153659695	A	T	153659695	3	4	11	1	0	0	0	0	1	0	0	0	10667	101	4	5	2005	5	NPR1	1	153659695	Missense_Mutation	SNP	A	TCGA-A1-A0SN-01A-11D-A142-09	44121424	153659695	95590926	3	564										
DNM3	0	genome.wustl.edu	37	chr1	172011231	172011231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ataccctggaactctcaggtGgtgctaaaatcaatcgtatt	8	9	2	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	172011231	172011231	G	A	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.1075	p.G359S	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	120	0	0	28	40	58.82	-	-	-	A	172011231	G	A	172011231	3	1	11	1	0	0	0	0	1	0	0	0	4708	1348	47	4	1105	4	DNM3	1	172011231	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	18351536	172011231	77239390	4	565										
C4BPA	0	genome.wustl.edu	37	chr1	207317171	207317171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tttccattacagctctgtgtCggaaaccagaattagtgaat	8	8	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	207317171	207317171	C	T	SNP	C4BPA	ENST00000367070	human	ensembl	69_37n	1	known	missense	c.1453	p.R485W	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838	119	1	0.83	102	20	16.39	-	-	-	T	207317171	C	T	207317171	3	4	11	1	0	0	0	0	1	0	0	0	2270	875	31	1	1491	1	C4BPA	1	207317171	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	35305940	207317171	41933450	5	566										
KIF26B	0	genome.wustl.edu	37	chr1	245583003	245583003	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cagggctcctgcgtggccagCgagacttccacaggcacatc	12	15	0	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	1	245583003	245583003	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.1122	p.S374	0.984	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	39	0	0	32	5	13.51	-	-	-	T	245583003	C	T	245583003	2	4	11	1	0	0	0	0	0	0	0	1	8347	767	27	1		1	KIF26B	1	245583003	Silent	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	38265832	245583003	3667618	6	567										
NBEAL1	0	genome.wustl.edu	37	chr2	204001448	204001448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tgttttcagcactaagtaaaCcaggaatatccagtgaacta	7	8	1	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	2	204001448	204001448	C	A	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.4429	p.P1477T	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	38	0	0	29	6	17.14	-	-	-	A	204001448	C	A	204001448	3	1	11	1	0	0	0	0	1	0	0	0	10260	507	18	4	4535	4	NBEAL1	2	204001448	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		204001448	39197925	7	568										
DNAH12	0	genome.wustl.edu	37	chr3	57419477	57419477	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tcctctccatagccatgttcAttcattaaagttagcgtatc	5	11	3	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	3	57419477	57419477	A	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	silent	c.4665	p.N1555	0.998	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	126	0	0	31	19	38	-	-	-	G	57419477	A	G	57419477	2	3	11	1	0	0	0	0	0	0	0	1	4636	214	8	5		5	DNAH12	3	57419477	Silent	SNP	A	TCGA-A1-A0SN-01A-11D-A142-09		57419477	140602953	8	569										
ARHGAP31	0	genome.wustl.edu	37	chr3	119133124	119133124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tctgtctcctccactcccacCtgctcctccccctccaactc	2	24	2	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	3	119133124	119133124	C	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.2348	p.P783R	0.985	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	23	0	0	19	5	20.83	-	-	-	G	119133124	C	G	119133124	3	3	11	1	0	0	0	0	1	0	0	0	882	681	24	4	2394	4	ARHGAP31	3	119133124	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	61713647	119133124	78889306	9	570										
KIAA0232	0	genome.wustl.edu	37	chr4	6863027	6863027	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	agtgggaatcagggagaattAaaagcatccatgaagtatgt	12	4	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	4	6863027	6863027	A	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.918	p.L306F	0.001	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	27	0	0	17	6	26.09	-	-	-	T	6863027	A	T	6863027	3	4	11	1	0	0	0	0	1	0	0	0	8215	359	13	5	936	5	KIAA0232	4	6863027	Missense_Mutation	SNP	A	TCGA-A1-A0SN-01A-11D-A142-09		6863027	184291249	10	571										
DNAH5	0	genome.wustl.edu	37	chr5	13865914	13865914	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tgtagaagatttagttgcttCtttatttcaagaagctgagg	10	4	2	4			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	5	13865914	13865914	C	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.4218	p.K1406N	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	58	0	0	63	7	10	-	-	-	A	13865914	C	A	13865914	3	1	11	1	0	0	0	0	1	0	0	0	4640	912	32	2	9868	2	DNAH5	5	13865914	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		13865914	167049346	11	572										
TRIM39	0	genome.wustl.edu	37	chr6	30298612	30298612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	agaagctgcaggagatcactCgctgcaagtcctctgaggag	13	10	2	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	6	30298612	30298612	C	T	SNP	TRIM39	ENST00000376656	human	ensembl	69_37n	1	known	missense	c.508	p.R170C	0.997	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM39	HGNC	ENSG00000204599	50	0	0	38	8	17.39	-	-	-	T	30298612	C	T	30298612	3	4	11	1	0	0	0	0	1	0	0	0	16609	884	31	1	514	1	TRIM39	6	30298612	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		30298612	140816455	12	573										
DPCR1	0	genome.wustl.edu	37	chr6	30917380	30917380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cacaccatccccagcagagcCtacagaacatggagaaagga	9	13	0	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	6	30917380	30917380	C	T	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	missense	c.1139	p.P380L	0.008	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	138	0	0	122	19	13.48	-	-	-	T	30917380	C	T	30917380	3	4	11	1	0	0	0	0	1	0	0	0	4747	681	24	4	1145	4	DPCR1	6	30917380	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	618768	30917380	140197687	13	574										
MCHR2	0	genome.wustl.edu	37	chr6	100404004	100404004	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cggcagaggtgttccaacaaGatgcatgaaatggattcatt	11	7	1	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	6	100404004	100404004	G	C	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	missense	c.20	p.S7C	0.080	prints_MCH2_receptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	79	0	0	21	8	27.59	-	-	-	C	100404004	G	C	100404004	3	2	11	1	0	0	0	0	1	0	0	0	9454	942	33	2	1022	2	MCHR2	6	100404004	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	69486624	100404004	70711063	14	575										
INTS1	0	genome.wustl.edu	37	chr7	1512808	1512808	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	atcaccaggtcactgttgtcGaaggacaggtcgctggggag	15	9	2	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	7	1512808	1512808	G	A	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.6582	p.F2194	0.942	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	35	0	0	27	9	25	-	-	-	A	1512808	G	A	1512808	2	1	11	1	0	0	0	0	0	0	0	1	7829	1049	37	1		1	INTS1	7	1512808	Silent	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		1512808	157625855	15	576										
AKAP9	0	genome.wustl.edu	37	chr7	91631496	91631497	+	Frame_Shift_Del	DEL	AG	AG	-													0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	caacttaaaacagaattgttAgaaaaacagatgaaggaaaa							TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	7	91631496	91631497	AG	-	DEL	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	frame_shift_del	c.2301_2302	p.E768fs	1.000:1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	36	0	0	19	6	24	-	-	-	-	91631497	AG	-	91631496	7	5	11	1	0	1	0	1	0	0	0	0	459	417	15	0	2295	0	AKAP9	7	91631496	Frame_Shift_Del	DEL	AG	TCGA-A1-A0SN-01A-11D-A142-09	90118688	91631496	67507167	16	577										
SPAM1	0	genome.wustl.edu	37	chr7	123594426	123594426	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	catccatttatttgaacactCagcagtctcctgtagctgct	6	12	2	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	7	123594426	123594426	C	T	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	nonsense	c.802	p.Q268*	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	68	0	0	60	14	18.92	-	-	-	T	123594426	C	T	123594426	4	4	11	1	0	0	0	0	0	1	0	0	15077	827	29	2	804	2	SPAM1	7	123594426	Nonsense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	31962930	123594426	35544237	17	578										
GRM8	0	genome.wustl.edu	37	chr7	126544645	126544645	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cataatcactgctcgagcatTaggtgtttctagcaggcgtt	10	9	2	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	7	126544645	126544645	T	G	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	missense	c.820	p.N274H	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	110	0	0	64	131	67.18	-	-	-	G	126544645	T	G	126544645	3	3	11	1	0	0	0	0	1	0	0	0	6854	1754	61	5	1988	5	GRM8	7	126544645	Missense_Mutation	SNP	T	TCGA-A1-A0SN-01A-11D-A142-09	2950219	126544645	32594018	18	579										
XKR4	0	genome.wustl.edu	37	chr8	56436404	56436404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	acccagattcgggcagtcacCaagttgtgcttgtgaggacc	12	11	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	8	56436404	56436404	C	T	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1571	p.P524L	0.977	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	37	0	0	19	8	29.63	-	-	-	T	56436404	C	T	56436404	3	4	11	1	0	0	0	0	1	0	0	0	17530	594	21	4	1581	4	XKR4	8	56436404	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		56436404	89927618	19	580										
PLCE1	0	genome.wustl.edu	37	chr10	96066253	96066253	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	gcattgaagtcgacgtcctgGgcatgcctctggacagctgc	13	12	1	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	10	96066253	96066253	G	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.5692	p.G1898R	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	80	0	0	34	6	15	-	-	-	C	96066253	G	C	96066253	3	2	11	1	0	0	0	0	1	0	0	0	12108	1232	43	4	6076	4	PLCE1	10	96066253	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		96066253	39468494	20	581										
MUC5B	0	genome.wustl.edu	37	chr11	1264225	1264225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ccaccggctctgtggccaccCcctcctccaccccaggaaca	7	22	1	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	11	1264225	1264225	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.6124	p.P2042S	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	148	0	0	76	57	42.86	-	-	-	T	1264225	C	T	1264225	3	4	11	1	0	0	0	0	1	0	0	0	10051	623	22	4	6246	4	MUC5B	11	1264225	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		1264225	133742291	21	582										
OR5T3	0	genome.wustl.edu	37	chr11	56020439	56020439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tgatttcattctgttgtccaTtctgaagatgcattctgcta	7	8	4	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	11	56020439	56020439	T	C	SNP	OR5T3	ENST00000303059	human	ensembl	69_37n	1	known	missense	c.764	p.I255T	0.560	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T3	HGNC	ENSG00000172489	95	0	0	41	6	12.77	-	-	-	C	56020439	T	C	56020439	3	2	11	1	0	0	0	0	1	0	0	0	11256	1493	52	5	766	5	OR5T3	11	56020439	Missense_Mutation	SNP	T	TCGA-A1-A0SN-01A-11D-A142-09	54756214	56020439	78986077	22	583										
APLP2	0	genome.wustl.edu	37	chr11	129993589	129993589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	gacctctccaagggaaagtgCgtgcgctttatatatggtgg	13	8	1	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	11	129993589	129993589	C	T	SNP	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	silent	c.1005	p.C335	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	66	0	0	34	10	22.22	-	-	-	T	129993589	C	T	129993589	2	4	11	1	0	0	0	0	0	0	0	1	781	776	27	1		1	APLP2	11	129993589	Silent	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	73973150	129993589	5012927	23	584										
CLECL1	0	genome.wustl.edu	37	chr12	9885586	9885586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cgagttctaacggggaagtcCgaacagttttgatgtcagcg	13	8	2	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	12	9885586	9885586	C	T	SNP	CLECL1	ENST00000327839	human	ensembl	69_37n	-1	known	missense	c.275	p.R92Q	0.006	NULL	superfamily_C-type_lectin_fold	-	no_errors	CLECL1	HGNC	ENSG00000184293	37	0	0	33	6	15.38	-	-	-	T	9885586	C	T	9885586	3	4	11	1	0	0	0	0	1	0	0	0	3553	652	23	1	236	1	CLECL1	12	9885586	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		9885586	123966309	24	585										
KNTC1	0	genome.wustl.edu	37	chr12	123058840	123058840	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cctttttaggatttactgaaTagatgcagctcaaagtccac	7	9	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	12	123058840	123058840	T	C	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	silent	c.2295	p.N765	0.998	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	51	0	0	31	5	13.89	-	-	-	C	123058840	T	C	123058840	2	2	11	1	0	0	0	0	0	0	0	1	8481	1403	49	5		5	KNTC1	12	123058840	Silent	SNP	T	TCGA-A1-A0SN-01A-11D-A142-09	113173254	123058840	10793055	25	586										
NGB	0	genome.wustl.edu	37	chr14	77735657	77735657	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	aggggcagcaggtcaggctcCagggcaaacagcctgtggga	17	10	1	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	14	77735657	77735657	C	G	SNP	NGB	ENST00000298352	human	ensembl	69_37n	-1	known	silent	c.102	p.L34	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin	-	no_errors	NGB	HGNC	ENSG00000165553	33	0	0	21	10	32.26	-	-	-	G	77735657	C	G	77735657	2	3	11	1	0	0	0	0	0	0	0	1	10464	581	21	4		4	NGB	14	77735657	Silent	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		77735657	29613883	26	587										
PHKG2	0	genome.wustl.edu	37	chr16	30760196	30760196	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ccgactgggccgccgccaaaGagttttaccagaagtacgac	11	13	0	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	16	30760196	30760196	G	A	SNP	PHKG2	ENST00000563588	human	ensembl	69_37n	1	known	missense	c.55	p.E19K	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873	19	0	0	9	7	43.75	-	-	-	A	30760196	G	A	30760196	3	1	11	1	0	0	0	0	1	0	0	0	11921	943	33	2	57	2	PHKG2	16	30760196	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		30760196	59594557	27	588										
NCOR1	0	genome.wustl.edu	37	chr17	16029439	16029439	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ttcctcttcatctttcttttCttcttcttttttttctgttt	1	10	8	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	16029439	16029439	C	G	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.1591	p.E531Q	0.998	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	77	0	0	44	15	25	-	-	-	G	16029439	C	G	16029439	3	3	11	1	0	0	0	0	1	0	0	0	10307	922	32	2	5859	2	NCOR1	17	16029439	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		16029439	65165771	28	589										
NEK8	0	genome.wustl.edu	37	chr17	27061083	27061083	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tggaacagatgaccaaggaaGagcggcaggcagcccagaat	14	9	0	4			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	27061083	27061083	G	C	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.130	p.E44Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	46	0	0	30	8	21.05	-	-	-	C	27061083	G	C	27061083	3	2	11	1	0	0	0	0	1	0	0	0	10402	943	33	2	136	2	NEK8	17	27061083	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	11031644	27061083	54134127	29	590										
CDC6	0	genome.wustl.edu	37	chr17	38457154	38457154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cccaagtcatctcagaagttGatggtaacaggatgaccttg	10	9	2	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	38457154	38457154	G	C	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	missense	c.1324	p.D442H	1.000	pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	49	0	0	351	42	10.69	-	-	-	C	38457154	G	C	38457154	3	2	11	1	0	0	0	0	1	0	0	0	3112	1290	45	2	1358	2	CDC6	17	38457154	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	11396071	38457154	42738056	30	591										
CDC6	0	genome.wustl.edu	37	chr17	38458209	38458209	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	aaatagaacatgctctgaaaGataaagctttaattggaaat	7	4	1	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	38458209	38458209	G	C	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	missense	c.1639	p.D547H	1.000	pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	88	0	0	434	64	12.85	-	-	-	C	38458209	G	C	38458209	3	2	11	1	0	0	0	0	1	0	0	0	3112	942	33	2	1681	2	CDC6	17	38458209	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	1055	38458209	42737001	31	592										
KRT24	0	genome.wustl.edu	37	chr17	38857431	38857431	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	aggtaggctagctcctcggtGaaactctcaatctgcatctc	9	12	3	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	38857431	38857431	G	A	SNP	KRT24	ENST00000264651	human	ensembl	69_37n	-1	known	silent	c.816	p.F272	0.230	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916	67	0	0	98	20	16.95	-	-	-	A	38857431	G	A	38857431	2	1	11	1	0	0	0	0	0	0	0	1	8514	1281	45	2		2	KRT24	17	38857431	Silent	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	399222	38857431	42337779	32	593										
BPTF	0	genome.wustl.edu	37	chr17	65850252	65850252	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ccttttcgctttgaggacttTtgtgcagctctggtgagcca	11	10	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	17	65850252	65850252	T	C	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	silent	c.810	p.F270	0.999	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	83	0	0	65	12	15.58	-	-	-	C	65850252	T	C	65850252	2	2	11	1	0	0	0	0	0	0	0	1	1503	1838	64	5		5	BPTF	17	65850252	Silent	SNP	T	TCGA-A1-A0SN-01A-11D-A142-09	26992821	65850252	15344958	33	594										
CABYR	0	genome.wustl.edu	37	chr18	21735836	21735836	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	caaaaccacccagtttccatCagtttatgctgtgccaggca	7	13	1	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	18	21735836	21735836	C	T	SNP	CABYR	ENST00000463087	human	ensembl	69_37n	1	known	missense	c.371	p.S124L	0.984	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	55	0	0	30	7	18.92	-	-	-	T	21735836	C	T	21735836	3	4	11	1	0	0	0	0	1	0	0	0	2561	838	29	2	381	2	CABYR	18	21735836	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09		21735836	56341412	34	595										
EPS15L1	0	genome.wustl.edu	37	chr19	16528799	16528799	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ccgaaggcgggaccatgtccGgcgagaggacttgaggaggg	19	9	0	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	19	16528799	16528799	G	C	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	missense	c.1067	p.P356R	0.315	smart_EPS15_homology,pfscan_EPS15_homology	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	55	0	0	36	7	16.28	-	-	-	C	16528799	G	C	16528799	3	2	11	1	0	0	0	0	1	0	0	0	5230	1116	39	3	1579	3	EPS15L1	19	16528799	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		16528799	42600184	35	596										
ZNF682	0	genome.wustl.edu	37	chr19	20116956	20116956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cacattcttcacatttatagCgtttgacggcagtatgaatt	7	8	2	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	19	20116956	20116956	C	T	SNP	ZNF682	ENST00000397165	human	ensembl	69_37n	-1	known	missense	c.1355	p.R452H	0.091	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124	54	0	0	41	7	14.58	-	-	-	T	20116956	C	T	20116956	3	4	11	1	0	0	0	0	1	0	0	0	18185	768	27	1	145	1	ZNF682	19	20116956	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	3588157	20116956	39012027	36	597										
ZNF677	0	genome.wustl.edu	37	chr19	53741328	53741328	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ggaactattgatagacttctCaactggattacattcataca	6	8	2	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	19	53741328	53741328	C	T	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	missense	c.652	p.E218K	0.384	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	52	0	0	31	10	24.39	-	-	-	T	53741328	C	T	53741328	3	4	11	1	0	0	0	0	1	0	0	0	18180	835	29	2	1106	2	ZNF677	19	53741328	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	33624372	53741328	5387655	37	598										
ADAM33	0	genome.wustl.edu	37	chr20	3649953	3649953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ggtccctgcctaccttggggGtcaggcgagactgctggcag	16	12	1	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	20	3649953	3649953	G	T	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	missense	c.2397	p.D799E	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	62	0	0	34	18	34.62	-	-	-	T	3649953	G	T	3649953	3	4	11	1	0	0	0	0	1	0	0	0	250	1252	44	4	52	4	ADAM33	20	3649953	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		3649953	59375567	38	599										
CDS2	0	genome.wustl.edu	37	chr20	5165585	5165585	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ttctttggtcggaccccactCatcaaggtaaatggattacc	8	11	3	0			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	20	5165585	5165585	C	A	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	1	known	silent	c.753	p.L251	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	118	0	0	65	8	10.96	-	-	-	A	5165585	C	A	5165585	2	1	11	1	0	0	0	0	0	0	0	1	3207	813	29	2		2	CDS2	20	5165585	Silent	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	1515632	5165585	57859935	39	600										
RBM39	0	genome.wustl.edu	37	chr20	34312573	34312573	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	agaggcactgagctaacatcGacgaactccacataagcaat	8	11	0	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	20	34312573	34312573	G	A	SNP	RBM39	ENST00000448303	human	ensembl	69_37n	-1	novel	nonsense	c.223	p.R75*	0.569	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_start_codon:pseudogene:no_stop_codon	RBM39	HGNC	ENSG00000131051	65	0	0	38	11	22.45	-	-	-	A	34312573	G	A	34312573	4	1	11	1	0	0	0	0	0	1	0	0	13216	1045	37	1	1026	1	RBM39	20	34312573	Nonsense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	29146988	34312573	28712947	40	601										
ELFN2	0	genome.wustl.edu	37	chr22	37770941	37770941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cggcgactcacactgcaggcGgtcgtagttcttggtgacgt	14	11	2	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	22	37770941	37770941	G	A	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.634	p.R212C	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	29	0	0	7	8	53.33	-	-	-	A	37770941	G	A	37770941	3	1	11	1	0	0	0	0	1	0	0	0	5095	1116	39	1	1832	1	ELFN2	22	37770941	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		37770941	13533625	41	602										
IQSEC2	0	genome.wustl.edu	37	chrX	53265517	53265517	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	ggcttacctgcatcagagagGtctcgcagggaactgctgag	14	10	2	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	X	53265517	53265517	G	C	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3438	p.D1146E	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	37	0	0	21	8	27.59	-	-	-	C	53265517	G	C	53265517	3	2	11	1	0	0	0	0	1	0	0	0	7872	1252	44	4	1040	4	IQSEC2	23	53265517	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09		53265517	102005043	42	603										
ACRC	0	genome.wustl.edu	37	chrX	70832365	70832365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	acccgttgccataactataaGattaactacaaggtccatta	5	10	0	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	X	70832365	70832365	G	C	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.1911	p.K637N	0.999	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	62	0	0	29	8	21.62	-	-	-	C	70832365	G	C	70832365	3	2	11	1	0	0	0	0	1	0	0	0	171	933	33	2	1953	2	ACRC	23	70832365	Missense_Mutation	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	17566848	70832365	84438195	43	604										
IRS4	0	genome.wustl.edu	37	chrX	107978147	107978147	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	cttccttcctgatcttctttGccctggggattgccttcctc	7	15	2	1			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	X	107978147	107978147	G	T	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	silent	c.1428	p.G476	0.021	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	74	0	0	46	7	13.21	-	-	-	T	107978147	G	T	107978147	2	4	11	1	0	0	0	0	0	0	0	1	7896	1306	46	4		4	IRS4	23	107978147	Silent	SNP	G	TCGA-A1-A0SN-01A-11D-A142-09	37145782	107978147	47292413	44	605										
HS6ST2	0	genome.wustl.edu	37	chrX	131762534	131762534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	tgcgttgttcctgacgctttCgcctggcctcctgatgctct	10	14	1	2			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	X	131762534	131762534	C	T	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1655	p.R552Q	0.996	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	91	0	0	39	30	43.48	-	-	-	T	131762534	C	T	131762534	3	4	11	1	0	0	0	0	1	0	0	0	7422	884	31	1	286	1	HS6ST2	23	131762534	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	23784387	131762534	23508026	45	606										
SPANXN2	0	genome.wustl.edu	37	chrX	142795593	142795593	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.239130434782609	11	0.0284106495757214	2.30989583333333	3.35984848484848	1.67992424242424	1	1	6	taagaccctgttcggtgcctCctgcatctgataagaaaaca	8	11	1	3			TCGA-A1-A0SN-01A-11D-A142-09	TCGA-A1-A0SN-10B-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b8d93f4-acc2-48ee-9ca8-a327eb0463c2	14f376b8-4bd0-4931-9ddd-0b4b1cb89137	X	142795593	142795593	C	G	SNP	SPANXN2	ENST00000370498	human	ensembl	69_37n	-1	known	missense	c.85	p.E29Q	0.001	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924	94	0	0	66	19	22.35	-	-	-	G	142795593	C	G	142795593	3	3	11	1	0	0	0	0	1	0	0	0	15082	864	30	2	461	2	SPANXN2	23	142795593	Missense_Mutation	SNP	C	TCGA-A1-A0SN-01A-11D-A142-09	11033059	142795593	12474967	46	607										
ARID1A	0	genome.wustl.edu	37	chr1	27106816	27106816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	tggccacaccccccttcagcCgcctggagaagttgtatagc	10	15	1	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	27106816	27106816	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.6427	p.R2143C	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	69	0	0	94	12	11.32	-	-	-	T	27106816	C	T	27106816	3	4	12	1	0	0	0	0	1	0	0	0	915	652	23	1	6505	1	ARID1A	1	27106816	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		27106816	222143805	1	608										
TXNIP	0	genome.wustl.edu	37	chr1	145440077	145440077	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	aagaaaagaaagtttcctgcAtgttcattcctgatgggcgg	11	7	1	3			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	145440077	145440077	A	G	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	1	known	missense	c.511	p.M171V	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	94	0	0	63	23	26.74	-	-	-	G	145440077	A	G	145440077	3	3	12	1	0	0	0	0	1	0	0	0	16900	217	8	5	525	5	TXNIP	1	145440077	Missense_Mutation	SNP	A	TCGA-A1-A0SP-01A-11D-A099-09	118333261	145440077	103810544	2	609										
ZNF687	0	genome.wustl.edu	37	chr1	151259248	151259248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	tggaaggcaaaactcccttgGacctgtttgctcattttggc	10	10	1	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	151259248	151259248	G	A	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.481	p.D161N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	52	0	0	33	26	44.07	-	-	-	A	151259248	G	A	151259248	3	1	12	1	0	0	0	0	1	0	0	0	18188	1174	41	2	483	2	ZNF687	1	151259248	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09	5819171	151259248	97991373	3	610										
HRNR	0	genome.wustl.edu	37	chr1	152185800	152185801	+	Frame_Shift_Del	DEL	AC	AC	-													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gtgtcggccgtggctaagagActggccagatccagccccat							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	152185800	152185801	AC	-	DEL	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_del	c.8305_8304	p.Q2768fs	0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0	6	3	33.33	-	-	-	-	152185801	AC	-	152185800	7	5	12	1	0	1	0	1	0	0	0	0	7410	275	10	0	251	0	HRNR	1	152185800	Frame_Shift_Del	DEL	AC	TCGA-A1-A0SP-01A-11D-A099-09	926552	152185800	97064821	4	611										
ASPM	0	genome.wustl.edu	37	chr1	197056085	197056085	+	Frame_Shift_Del	DEL	G	G	-													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	taaatacggtcaacaactttGgacctacttcgtacatccta							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	197056085	197056085	G	-	DEL	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	frame_shift_del	c.10179	p.V3395fs	0.998	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	222	0	0	43	11	20.37	-	-	-	-	197056085	G	-	197056085	7	5	12	1	0	1	0	1	0	0	0	0	1060	1335	47	0	262	0	ASPM	1	197056085	Frame_Shift_Del	DEL	G	TCGA-A1-A0SP-01A-11D-A099-09	44870285	197056085	52194536	5	612										
ZC3H11A	0	genome.wustl.edu	37	chr1	203798941	203798941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ggaaggtgatgaaaccaaaaCacctaccctgcaaccaactc	7	13	0	2			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	203798941	203798941	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.536	p.T179I	0.997	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	100	0	0	55	17	23.61	-	-	-	T	203798941	C	T	203798941	3	4	12	1	0	0	0	0	1	0	0	0	17656	478	17	4	554	4	ZC3H11A	1	203798941	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	6742856	203798941	45451680	6	613										
KCTD3	0	genome.wustl.edu	37	chr1	215753269	215753269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	caggatttcctgtggatccaCgaaaggtgctaatagtagct	11	8	0	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	215753269	215753269	C	G	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	missense	c.553	p.R185G	0.996	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	256	0	0	191	112	36.96	-	-	-	G	215753269	C	G	215753269	3	3	12	1	0	0	0	0	1	0	0	0	8164	528	19	3	583	3	KCTD3	1	215753269	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	11954328	215753269	33497352	7	614										
SLC4A10	0	genome.wustl.edu	37	chr2	162757469	162757469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	atggaacagcagctcatgggGaagcagagccccacggagga	15	10	1	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	2	162757469	162757469	G	A	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	missense	c.1390	p.E464K	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	150	0	0	85	20	19.05	-	-	-	A	162757469	G	A	162757469	3	1	12	1	0	0	0	0	1	0	0	0	14740	1175	41	2	1521	2	SLC4A10	2	162757469	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		162757469	80441904	8	615										
COPS7B	0	genome.wustl.edu	37	chr2	232653392	232653392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	taagccaggtcttagaggctCccggagtgtatgtctttgga	13	8	2	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	2	232653392	232653392	C	T	SNP	COPS7B	ENST00000350033	human	ensembl	69_37n	1	known	missense	c.112	p.P38S	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7B	HGNC	ENSG00000144524	131	0	0	85	43	33.59	-	-	-	T	232653392	C	T	232653392	3	4	12	1	0	0	0	0	1	0	0	0	3769	855	30	2	114	2	COPS7B	2	232653392	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	69895923	232653392	10545981	9	616										
DSPP	0	genome.wustl.edu	37	chr4	88537153	88537153	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gatagcagtgacagcagcgaTagcagtgacagcagtgacag	14	8	0	3			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	88537153	88537153	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3339	p.D1113	0.480	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	41	0	0	182	42	18.75	-	-	-	C	88537153	T	C	88537153	2	2	12	1	0	0	0	0	0	0	0	1	4817	1403	49	5		5	DSPP	4	88537153	Silent	SNP	T	TCGA-A1-A0SP-01A-11D-A099-09		88537153	102617123	10	617										
LRIT3	0	genome.wustl.edu	37	chr4	110789053	110789053	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gatgccactggcttccccacCccacagatcacatggaccag	8	17	1	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	110789053	110789053	C	A	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	silent	c.711	p.T237	0.971	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	91	0	0	98	71	42.01	-	-	-	A	110789053	C	A	110789053	2	1	12	1	0	0	0	0	0	0	0	1	9015	610	22	4		4	LRIT3	4	110789053	Silent	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	22251900	110789053	80365223	11	618										
FBXW7	0	genome.wustl.edu	37	chr4	153253808	153253808	+	Frame_Shift_Del	DEL	G	G	-													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	agccaaaattctccagtagcGacatgtctgagctgcttgta							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	153253808	153253808	G	-	DEL	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	frame_shift_del	c.925	p.R309fs	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	100	0	0	79	28	25.93	-	-	-	-	153253808	G	-	153253808	7	5	12	1	0	1	0	1	0	0	0	0	5815	1058	37	0	1226	0	FBXW7	4	153253808	Frame_Shift_Del	DEL	G	TCGA-A1-A0SP-01A-11D-A099-09	42464755	153253808	37900468	12	619										
THBS4	0	genome.wustl.edu	37	chr5	79375018	79375018	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gtggtcatgtggaagcagacGgagcagacatattggcaagc	15	7	1	2			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	5	79375018	79375018	G	A	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	silent	c.2448	p.T816	0.001	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	112	0	0	67	67	50	-	-	-	A	79375018	G	A	79375018	2	1	12	1	0	0	0	0	0	0	0	1	15951	1103	39	1		1	THBS4	5	79375018	Silent	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		79375018	101540242	13	620										
EPPK1	0	genome.wustl.edu	37	chr8	144947299	144947299	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	acatacaccccagctatgctCctggcctggggcctgggggg	14	14	0	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	8	144947299	144947299	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.123	p.R41	0.746	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	12	0	0	40	11	21.57	-	-	-	T	144947299	C	T	144947299	2	4	12	1	0	0	0	0	0	0	0	1	5227	854	30	2		2	EPPK1	8	144947299	Silent	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		144947299	1416723	14	621										
SVEP1	0	genome.wustl.edu	37	chr9	113170187	113170187	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	atctgcaccttctacaaaacCattttcaatgggttgtgggg	9	9	3	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	9	113170187	113170187	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.7693	p.G2565R	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	53	0	0	57	25	30.49	-	-	-	G	113170187	C	G	113170187	3	3	12	1	0	0	0	0	1	0	0	0	15511	594	21	4	3066	4	SVEP1	9	113170187	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		113170187	28043244	15	622										
KIF20B	0	genome.wustl.edu	37	chr10	91483856	91483856	+	Frame_Shift_Del	DEL	T	T	-													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gggctcaacgggaagctgacTttaagtaagttatttatttc							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	91483856	91483856	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	frame_shift_del	c.1858	p.F620fs	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	86	0	0	10	2	16.67	-	-	-	-	91483856	T	-	91483856	7	5	12	1	0	1	0	1	0	0	0	0	8339	1609	56	0	1908	0	KIF20B	10	91483856	Frame_Shift_Del	DEL	T	TCGA-A1-A0SP-01A-11D-A099-09		91483856	44050891	16	623										
PDE6C	0	genome.wustl.edu	37	chr10	95394645	95394645	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	tggaaaacctttcgatgagcAtgatgaatacattaccgagg	10	7	0	3			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	95394645	95394645	A	C	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.1250	p.H417P	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	132	0	0	113	17	13.08	-	-	-	C	95394645	A	C	95394645	3	2	12	1	0	0	0	0	1	0	0	0	11720	217	8	5	1284	5	PDE6C	10	95394645	Missense_Mutation	SNP	A	TCGA-A1-A0SP-01A-11D-A099-09	3910789	95394645	40140102	17	624										
ALDH18A1	0	genome.wustl.edu	37	chr10	97371060	97371060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gggagctgccatacttgtggAtgtggtcaatggcatcctga	14	8	1	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	97371060	97371060	A	G	SNP	ALDH18A1	ENST00000371224	human	ensembl	69_37n	-1	known	missense	c.2063	p.I688T	1.000	superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	113	0	0	174	135	43.69	-	-	-	G	97371060	A	G	97371060	3	3	12	1	0	0	0	0	1	0	0	0	489	333	12	5	336	5	ALDH18A1	10	97371060	Missense_Mutation	SNP	A	TCGA-A1-A0SP-01A-11D-A099-09	1976415	97371060	38163687	18	625										
ATG2A	0	genome.wustl.edu	37	chr11	64668490	64668490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	aagtccgtgctgccgatcggCcgtgagaagtaaccgtccct	12	13	0	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	64668490	64668490	C	T	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.3604	p.A1202T	1.000	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	28	0	0	28	6	17.65	-	-	-	T	64668490	C	T	64668490	3	4	12	1	0	0	0	0	1	0	0	0	1097	726	26	4	1670	4	ATG2A	11	64668490	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		64668490	70338026	19	626										
BATF2	0	genome.wustl.edu	37	chr11	64756807	64756807	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	atgctccagctcgaggggctGtggaggggcagtttgggccg	19	9	0	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	64756807	64756807	G	A	SNP	BATF2	ENST00000301887	human	ensembl	69_37n	-1	known	nonsense	c.619	p.Q207*	0.602	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062	52	0	0	90	21	18.92	-	-	-	A	64756807	G	A	64756807	4	1	12	1	0	0	0	0	0	1	0	0	1330	1386	48	4	209	4	BATF2	11	64756807	Nonsense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09	88317	64756807	70249709	20	627										
ABCG4	0	genome.wustl.edu	37	chr11	119028976	119028976	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	attgaaagccacacctttgcCaccagcaccctcacacagtt	5	16	1	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	119028976	119028976	C	T	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	silent	c.1101	p.A367	1.000	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	57	0	0	78	81	50.94	-	-	-	T	119028976	C	T	119028976	2	4	12	1	0	0	0	0	0	0	0	1	70	581	21	4		4	ABCG4	11	119028976	Silent	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	54272169	119028976	15977540	21	628										
YEATS4	0	genome.wustl.edu	37	chr12	69784092	69784093	+	Frame_Shift_Ins	INS	-	-	A													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gatgaccaagcaaaagacatINSataaacagttctcatgagaa							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	12	69784092	69784093	-	A	INS	YEATS4	ENST00000247843	human	ensembl	69_37n	1	known	frame_shift_ins	c.680_681	p.*228fs	0.999:0.960	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337	66	0	0	10	5	33.33	-	-	-	A	69784093	-	A	69784092	7	5	12	1	0	1	1	0	0	0	0	0	17570	1406	49	0	706	0	YEATS4	12	69784092	Frame_Shift_Ins	INS	-	TCGA-A1-A0SP-01A-11D-A099-09		69784092	64067803	22	629										
TXNDC16	0	genome.wustl.edu	37	chr14	52978095	52978095	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	aaagtagagatgtgcatattCcacatcctcagagctacaaa	7	9	1	2			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	14	52978095	52978095	C	A	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	nonsense	c.619	p.E207*	0.981	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	153	0	0	54	50	48.08	-	-	-	A	52978095	C	A	52978095	4	1	12	1	0	0	0	0	0	1	0	0	16892	864	30	2	1910	2	TXNDC16	14	52978095	Nonsense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		52978095	54371445	23	630										
CYFIP1	0	genome.wustl.edu	37	chr15	22947066	22947066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gctacaactacaccagcgagGagaagtttgccctagtggag	12	10	0	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	22947066	22947066	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	missense	c.1339	p.E447K	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	76	0	0	195	80	29.09	-	-	-	A	22947066	G	A	22947066	3	1	12	1	0	0	0	0	1	0	0	0	4168	1175	41	2	1385	2	CYFIP1	15	22947066	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		22947066	79584326	24	631										
NUSAP1	0	genome.wustl.edu	37	chr15	41669445	41669445	+	Frame_Shift_Del	DEL	A	A	-													0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	aaataattatctaaatcaacAtgtcaacagaattaacttct							TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	41669445	41669445	A	-	DEL	NUSAP1	ENST00000559596	human	ensembl	69_37n	1	known	frame_shift_del	c.1175	p.H392fs	0.004	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804	55	0	0	12	2	14.29	-	-	-	-	41669445	A	-	41669445	7	5	12	1	0	1	0	1	0	0	0	0	10851	217	8	0	1213	0	NUSAP1	15	41669445	Frame_Shift_Del	DEL	A	TCGA-A1-A0SP-01A-11D-A099-09	18722379	41669445	60861947	25	632										
KCNG4	0	genome.wustl.edu	37	chr16	84270972	84270972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	accttccgcaccctccggtaGtaaaggcccttgatggacgg	11	14	0	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	16	84270972	84270972	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	silent	c.120	p.Y40	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	33	0	0	44	18	29.03	-	-	-	A	84270972	G	A	84270972	2	1	12	1	0	0	0	0	0	0	0	1	8084	1024	36	4		4	KCNG4	16	84270972	Silent	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		84270972	6083781	26	633										
TP53	0	genome.wustl.edu	37	chr17	7578382	7578382	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gctgctcaccatcgctatctGagcagcgctcatggtggggg	14	12	3	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	7578382	7578382	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.548	p.S183*	0.011	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	54	0	0	36	35	49.3	-	-	-	C	7578382	G	C	7578382	4	2	12	1	0	0	0	0	0	1	0	0	16477	1294	45	2	750	2	TP53	17	7578382	Nonsense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		7578382	73616828	27	634										
GPATCH8	0	genome.wustl.edu	37	chr17	42477336	42477336	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ttcttagatttctcccctgaCtctgccttagagcttttctc	5	13	4	3			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	42477336	42477336	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	silent	c.2109	p.E703	0.813	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	290	0	0	100	98	49.49	-	-	-	T	42477336	C	T	42477336	2	4	12	1	0	0	0	0	0	0	0	1	6644	564	20	4		4	GPATCH8	17	42477336	Silent	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	34898954	42477336	38717874	28	635										
DNAH17	0	genome.wustl.edu	37	chr17	76433854	76433854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ggggctgggggcaggctccgCgctgatgaacacccggtagt	18	11	0	2			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	76433854	76433854	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.11884	p.A3962T	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	47	0	0	74	33	30.84	-	-	-	T	76433854	C	T	76433854	3	4	12	1	0	0	0	0	1	0	0	0	4637	768	27	1	1518	1	DNAH17	17	76433854	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09	33956518	76433854	4761356	29	636										
BSG	0	genome.wustl.edu	37	chr19	580426	580426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gtactcctgcgtcttcctccCcgagcccatgggcacggcca	10	18	1	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	580426	580426	C	T	SNP	BSG	ENST00000333511	human	ensembl	69_37n	1	known	missense	c.620	p.P207L	0.164	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	BSG	HGNC	ENSG00000172270	23	0	0	73	23	23.96	-	-	-	T	580426	C	T	580426	3	4	12	1	0	0	0	0	1	0	0	0	1537	623	22	4	670	4	BSG	19	580426	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		580426	58548557	30	637										
POU2F2	0	genome.wustl.edu	37	chr19	42599447	42599447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	gctcttggtaccatatggggGctgtagctggccggcttccc	14	12	1	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	42599447	42599447	G	T	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.1122	p.S374R	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	36	0	0	27	11	28.95	-	-	-	T	42599447	G	T	42599447	3	4	12	1	0	0	0	0	1	0	0	0	12345	1194	42	4	333	4	POU2F2	19	42599447	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09	42019021	42599447	16529536	31	638										
LRRC4B	0	genome.wustl.edu	37	chr19	51022151	51022151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	tccagcgacttgaggtcgtcGaaggcgttgcgctcgatggt	15	10	0	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	51022151	51022151	G	T	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.819	p.F273L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	46	0	0	103	48	31.79	-	-	-	T	51022151	G	T	51022151	3	4	12	1	0	0	0	0	1	0	0	0	9073	1049	37	3	1326	3	LRRC4B	19	51022151	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09	8422704	51022151	8106832	32	639										
KCNQ2	0	genome.wustl.edu	37	chr20	62045493	62045493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ggtcaggtcctcggtcacaaActcgcaggggcagctcttgt	13	12	3	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	20	62045493	62045493	A	G	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.1495	p.F499L	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	76	0	0	113	46	28.93	-	-	-	G	62045493	A	G	62045493	3	3	12	1	0	0	0	0	1	0	0	0	8137	43	2	5	1055	5	KCNQ2	20	62045493	Missense_Mutation	SNP	A	TCGA-A1-A0SP-01A-11D-A099-09		62045493	980027	33	640										
THAP7	0	genome.wustl.edu	37	chr22	21354432	21354432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ttcattctggatgtaggctcCggcgggtgggggcaggcgca	18	9	2	0			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	22	21354432	21354432	C	T	SNP	THAP7	ENST00000215742	human	ensembl	69_37n	-1	known	missense	c.667	p.G223R	0.731	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP7	HGNC	ENSG00000184436	12	0	0	17	6	26.09	-	-	-	T	21354432	C	T	21354432	3	4	12	1	0	0	0	0	1	0	0	0	15944	661	23	1	266	1	THAP7	22	21354432	Missense_Mutation	SNP	C	TCGA-A1-A0SP-01A-11D-A099-09		21354432	29950134	34	641										
ZMYM3	0	genome.wustl.edu	37	chrX	70462188	70462188	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	cttagtgttgaagaacatgaGggtgttgaggaggacaaagg	16	3	0	4			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	70462188	70462188	G	C	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.3640	p.L1214V	1.000	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	72	0	0	90	52	36.62	-	-	-	C	70462188	G	C	70462188	3	2	12	1	0	0	0	0	1	0	0	0	17797	1000	35	4	490	4	ZMYM3	23	70462188	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09		70462188	84808372	35	642										
ALG13	0	genome.wustl.edu	37	chrX	110970225	110970225	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	2	0.904872247913239	0.962331201137171	2.52611940298507	0.594381035996488	1	1	0	ctggcaatgttatgtctaatGaacattttcatcctcagcat	6	9	3	1			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	110970225	110970225	G	A	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	missense	c.1606	p.E536K	0.999	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	97	0	0	127	55	30.22	-	-	-	A	110970225	G	A	110970225	3	1	12	1	0	0	0	0	1	0	0	0	515	1291	45	2	2122	2	ALG13	23	110970225	Missense_Mutation	SNP	G	TCGA-A1-A0SP-01A-11D-A099-09	40508037	110970225	44300335	36	643										
MTOR	0	genome.wustl.edu	37	chr1	11300583	11300583	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	atctgacggctcaggtcgtaGagcactgcagtgagggcagg	16	9	2	3			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	11300583	11300583	G	C	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.1563	p.L521	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	46	0	0	46	41	47.13	-	-	-	C	11300583	G	C	11300583	2	2	13	1	0	0	0	0	0	0	0	1	10026	929	33	2		2	MTOR	1	11300583	Silent	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		11300583	237950038	1	644										
WNT4	0	genome.wustl.edu	37	chr1	22446727	22446727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tgttgcatgtgcggcccctcGtgcccagcacgccgctgcgc	13	17	0	0			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	22446727	22446727	G	A	SNP	WNT4	ENST00000290167	human	ensembl	69_37n	-1	known	missense	c.872	p.T291M	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt4	-	no_errors	WNT4	HGNC	ENSG00000162552	21	0	0	24	14	36.84	-	-	-	A	22446727	G	A	22446727	3	1	13	1	0	0	0	0	1	0	0	0	17487	1145	40	1	187	1	WNT4	1	22446727	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	11146144	22446727	226803894	2	645										
FAM71A	0	genome.wustl.edu	37	chr1	212799630	212799630	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tcagccacagagccaatagaGatgacaaaaaggagaaaggc	11	8	1	4			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	212799630	212799630	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	missense	c.1411	p.D471N	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	44	0	0	39	23	37.1	-	-	-	A	212799630	G	A	212799630	3	1	13	1	0	0	0	0	1	0	0	0	5652	942	33	2	1413	2	FAM71A	1	212799630	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	190352903	212799630	36450991	3	646										
THUMPD2	0	genome.wustl.edu	37	chr2	39997226	39997226	+	Frame_Shift_Del	DEL	T	T	-													0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	accaacttcctggatcttcaTttataagtctttgcatttca							TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	2	39997226	39997226	T	-	DEL	THUMPD2	ENST00000505747	human	ensembl	69_37n	-1	known	frame_shift_del	c.296	p.N99fs	0.984	NULL	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_THUMP,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD2	HGNC	ENSG00000138050	58	0	0	15	2	11.76	-	-	-	-	39997226	T	-	39997226	7	5	13	1	0	1	0	1	0	0	0	0	15978	1493	52	0	1247	0	THUMPD2	2	39997226	Frame_Shift_Del	DEL	T	TCGA-A1-A0SQ-01A-21D-A142-09		39997226	203202147	4	647										
KIF1A	0	genome.wustl.edu	37	chr2	241684897	241684897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tctgcctgtgttcttcagggGctctgtggagaaggcctcgt	14	10	4	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	2	241684897	241684897	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.3412	p.P1138S	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	22	0	0	59	32	35.16	-	-	-	A	241684897	G	A	241684897	3	1	13	1	0	0	0	0	1	0	0	0	8335	1203	42	4	2035	4	KIF1A	2	241684897	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	201687671	241684897	1514476	5	648										
MCCC1	0	genome.wustl.edu	37	chr3	182812366	182812367	+	Frame_Shift_Ins	INS	-	-	A													0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ctgtggctgttgtgtacttcINSatggttctttgcctccacac							TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	3	182812366	182812367	-	A	INS	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.117_116	p.M39fs	0.969:0.660	superfamily_PreATP-grasp_fold	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	126	0	0	61	30	32.97	-	-	-	A	182812367	-	A	182812366	7	5	13	1	0	1	1	0	0	0	0	0	9445	826	29	0	2132	0	MCCC1	3	182812366	Frame_Shift_Ins	INS	-	TCGA-A1-A0SQ-01A-21D-A142-09		182812366	15210064	6	649										
ENAM	0	genome.wustl.edu	37	chr4	71508638	71508638	+	Frame_Shift_Del	DEL	G	G	-													0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	aaaactcctattacccaagaGgagattccagaaaagtccca							TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	4	71508638	71508638	G	-	DEL	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	frame_shift_del	c.1495	p.G499fs	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	43	0	0	11	2	15.38	-	-	-	-	71508638	G	-	71508638	7	5	13	1	0	1	0	1	0	0	0	0	5149	1001	35	0	1525	0	ENAM	4	71508638	Frame_Shift_Del	DEL	G	TCGA-A1-A0SQ-01A-21D-A142-09		71508638	119645638	7	650										
XRCC2	0	genome.wustl.edu	37	chr7	152345989	152345989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tctgcattatagtttgtgtcGttgcaaaaagaaccaggcga	10	7	1	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	152345989	152345989	G	A	SNP	XRCC2	ENST00000359321	human	ensembl	69_37n	-1	known	missense	c.581	p.T194M	0.999	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584	36	0	0	28	15	34.88	-	-	-	A	152345989	G	A	152345989	3	1	13	1	0	0	0	0	1	0	0	0	17550	1145	40	1	265	1	XRCC2	7	152345989	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		152345989	6792674	8	651										
RP1L1	0	genome.wustl.edu	37	chr8	10466300	10466300	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ggttttcccttctctctcctGagccattgcatctccctctg	6	16	4	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	10466300	10466300	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	nonsense	c.5308	p.Q1770*	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	90	0	0	61	43	41.35	-	-	-	A	10466300	G	A	10466300	4	1	13	1	0	0	0	0	0	1	0	0	13619	1299	45	2	1898	2	RP1L1	8	10466300	Nonsense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		10466300	135897722	9	652										
ANK1	0	genome.wustl.edu	37	chr8	41551422	41551422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ggggcccctctcaccaatgaCgctgcaaagcaggcgcaggc	13	15	1	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	41551422	41551422	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.3526	p.V1176I	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	14	0	0	20	6	23.08	-	-	-	T	41551422	C	T	41551422	3	4	13	1	0	0	0	0	1	0	0	0	620	536	19	1	2501	1	ANK1	8	41551422	Missense_Mutation	SNP	C	TCGA-A1-A0SQ-01A-21D-A142-09	31085122	41551422	104812600	10	653										
NTRK2	0	genome.wustl.edu	37	chr9	87635261	87635261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tatggcaaacagccctggtaCcagctgtcaaacaatgaggt	10	10	1	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	9	87635261	87635261	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	silent	c.2313	p.Y771	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	36	0	0	17	9	34.62	-	-	-	T	87635261	C	T	87635261	2	4	13	1	0	0	0	0	0	0	0	1	10780	518	18	4		4	NTRK2	9	87635261	Silent	SNP	C	TCGA-A1-A0SQ-01A-21D-A142-09		87635261	53578170	11	654										
GATA3	0	genome.wustl.edu	37	chr10	8115955	8115956	+	Frame_Shift_Ins	INS	-	-	C													0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ctgtcctttggaccacaccaINScccctccagcatggtcaccg							TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	8115955	8115956	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1304_1305	p.S437fs	1.000:0.921	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	34	0	0	26	21	44.68	-	-	-	C	8115956	-	C	8115955	7	5	13	1	0	1	1	0	0	0	0	0	6305	159	6	0	1322	0	GATA3	10	8115955	Frame_Shift_Ins	INS	-	TCGA-A1-A0SQ-01A-21D-A142-09		8115955	127418792	12	655										
PLCE1	0	genome.wustl.edu	37	chr10	96076406	96076406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	agaatgaatgtaggaaacaaCcattccagagagccattggt	10	7	0	3			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	96076406	96076406	C	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.6235	p.P2079T	0.995	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	35	0	0	27	6	18.18	-	-	-	A	96076406	C	A	96076406	3	1	13	1	0	0	0	0	1	0	0	0	12108	507	18	4	6631	4	PLCE1	10	96076406	Missense_Mutation	SNP	C	TCGA-A1-A0SQ-01A-21D-A142-09	87960451	96076406	39458341	13	656										
HYOU1	0	genome.wustl.edu	37	chr11	118917361	118917361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	cccattcttgtccttaggccGgggccggggcttggtaaact	13	12	1	0			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	11	118917361	118917361	G	A	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.2749	p.R917W	0.796	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	78	0	0	20	35	62.5	-	-	-	A	118917361	G	A	118917361	3	1	13	1	0	0	0	0	1	0	0	0	7524	1115	39	1	266	1	HYOU1	11	118917361	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		118917361	16089155	14	657										
TTC7B	0	genome.wustl.edu	37	chr14	91156023	91156023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	gctctgctcacacataccccGcaacaagatctctgccagct	6	17	3	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	14	91156023	91156023	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.811	p.R271W	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	104	0	0	56	16	22.22	-	-	-	A	91156023	G	A	91156023	3	1	13	1	0	0	0	0	1	0	0	0	16810	1086	38	1	1776	1	TTC7B	14	91156023	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		91156023	16193517	15	658										
GANC	0	genome.wustl.edu	37	chr15	42619578	42619578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	caggtctctcctcttacctgGatttcaccaatcccaaggtc	6	15	3	0			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	42619578	42619578	G	A	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	missense	c.1438	p.D480N	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	193	0	0	69	48	41.03	-	-	-	A	42619578	G	A	42619578	3	1	13	1	0	0	0	0	1	0	0	0	6284	1174	41	2	1488	2	GANC	15	42619578	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		42619578	59911814	16	659										
CGNL1	0	genome.wustl.edu	37	chr15	57754042	57754042	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	gacaagctgaaggagcaataTgatgctgagttgcaggccct	13	8	0	3			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	57754042	57754042	T	C	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	silent	c.2355	p.Y785	0.362	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	140	0	0	45	7	13.21	-	-	-	C	57754042	T	C	57754042	2	2	13	1	0	0	0	0	0	0	0	1	3333	1471	51	5		5	CGNL1	15	57754042	Silent	SNP	T	TCGA-A1-A0SQ-01A-21D-A142-09	15134464	57754042	44777350	17	660										
RFNG	0	genome.wustl.edu	37	chr17	80008605	80008605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	gcagagggcctgacgagtgcGcaccgccgagcagttggtgt	17	11	0	2			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	17	80008605	80008605	G	A	SNP	RFNG	ENST00000310496	human	ensembl	69_37n	-1	known	missense	c.352	p.R118C	1.000	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	RFNG	HGNC	ENSG00000169733	11	0	0	36	23	38.33	-	-	-	A	80008605	G	A	80008605	3	1	13	1	0	0	0	0	1	0	0	0	13335	1087	38	1	667	1	RFNG	17	80008605	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		80008605	1186605	18	661										
RASGRP4	0	genome.wustl.edu	37	chr19	38910824	38910824	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	gagttgccctcccgggccacGgtggcccagaaacgacctat	12	15	0	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	38910824	38910824	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	silent	c.456	p.T152	0.045	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	52	0	0	98	16	13.91	-	-	-	A	38910824	G	A	38910824	2	1	13	1	0	0	0	0	0	0	0	1	13160	1103	39	1		1	RASGRP4	19	38910824	Silent	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		38910824	20218159	19	662										
MAP4K1	0	genome.wustl.edu	37	chr19	39092118	39092118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	gtccaggcggccgtgctgtgGatccggagggggcagccatt	18	11	0	0			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	39092118	39092118	G	A	SNP	MAP4K1	ENST00000591921	human	ensembl	69_37n	-1	novel	missense	c.605	p.S202F	1.000	NULL	pfam_Citron,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K1	HGNC	ENSG00000104814	31	0	0	118	21	15.11	-	-	-	A	39092118	G	A	39092118	3	1	13	1	0	0	0	0	1	0	0	0	9330	1164	41	2	1121	2	MAP4K1	19	39092118	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	181294	39092118	20036865	20	663										
BCKDHA	0	genome.wustl.edu	37	chr19	41903744	41903744	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ttagccaagatggcggtagcGatcgctgcagcgagggtctg	16	9	1	1			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	41903744	41903744	G	A	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	1	known	silent	c.12	p.A4	0.101	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	16	0	0	13	47	77.05	-	-	-	A	41903744	G	A	41903744	2	1	13	1	0	0	0	0	0	0	0	1	1363	1045	37	1		1	BCKDHA	19	41903744	Silent	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	2811626	41903744	17225239	21	664										
PTPRH	0	genome.wustl.edu	37	chr19	55707989	55707989	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	ggaccgagccggcccgagacCcaacacagacacagcctccc	10	19	0	2			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	55707989	55707989	C	G	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	missense	c.2158	p.G720R	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	12	0	0	20	34	62.96	-	-	-	G	55707989	C	G	55707989	3	3	13	1	0	0	0	0	1	0	0	0	12886	623	22	4	1233	4	PTPRH	19	55707989	Missense_Mutation	SNP	C	TCGA-A1-A0SQ-01A-21D-A142-09	13804245	55707989	3420994	22	665										
CCDC106	0	genome.wustl.edu	37	chr19	56160842	56160842	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	agacccagctgcacatggctCtggagaggaactcctggctg	13	12	1	2			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	56160842	56160842	C	T	SNP	CCDC106	ENST00000308964	human	ensembl	69_37n	1	known	silent	c.205	p.L69	1.000	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581	76	0	0	18	104	84.55	-	-	-	T	56160842	C	T	56160842	2	4	13	1	0	0	0	0	0	0	0	1	2766	912	32	2		2	CCDC106	19	56160842	Silent	SNP	C	TCGA-A1-A0SQ-01A-21D-A142-09	452853	56160842	2968141	23	666										
ESF1	0	genome.wustl.edu	37	chr20	13750669	13750669	+	Splice_Site	DEL	T	T	-													0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	aatatcatctggtataaaccTaagaagtaaagaaaaaaaat							TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	20	13750669	13750669	T	-	DEL	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	splice_site_del	c.1404-2	e6-2	0.998	-	-	-	no_errors	ESF1	HGNC	ENSG00000089048	72	0	0	14	2	12.5	-	-	-	-	13750669	T	-	13750669	8	5	13	1	0	1	0	1	0	0	1	0	5288	1536	53	0	1185	0	ESF1	20	13750669	Splice_Site	DEL	T	TCGA-A1-A0SQ-01A-21D-A142-09		13750669	49274851	24	667										
BMX	0	genome.wustl.edu	37	chrX	15554529	15554529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	caaaggccaacaaggtccccGactctgtgtccctgggaaat	10	13	1	0			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	15554529	15554529	G	A	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.1201	p.D401N	0.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	51	0	0	19	12	38.71	-	-	-	A	15554529	G	A	15554529	3	1	13	1	0	0	0	0	1	0	0	0	1478	1058	37	1	1247	1	BMX	23	15554529	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09		15554529	139716031	25	668										
DCAF8L1	0	genome.wustl.edu	37	chrX	27998516	27998516	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	5	0.213145554625655	2.30378578024007	5.83625730994152	1.64144736842105	1	1	0	tcttgcctgaggtcaatggtGaacacaacggcatcttcacc	9	12	4	2			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	27998516	27998516	G	C	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.936	p.F312L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	126	0	0	47	32	40.51	-	-	-	C	27998516	G	C	27998516	3	2	13	1	0	0	0	0	1	0	0	0	4309	1281	45	2	870	2	DCAF8L1	23	27998516	Missense_Mutation	SNP	G	TCGA-A1-A0SQ-01A-21D-A142-09	12443987	27998516	127272044	26	669										
CD55	0	genome.wustl.edu	37	chr1	207498015	207498015	+	Frame_Shift_Del	DEL	A	A	-													0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	atatgagtgccgtccaggttAcagaagagaaccttctctat							TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	1	207498015	207498015	A	-	DEL	CD55	ENST00000314754	human	ensembl	69_37n	1	known	frame_shift_del	c.398	p.Y133fs	0.338	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD55	HGNC	ENSG00000196352	121	0	0	64	13	16.25	-	-	-	-	207498015	A	-	207498015	7	5	14	1	0	1	0	1	0	0	0	0	3053	391	14	0	408	0	CD55	1	207498015	Frame_Shift_Del	DEL	A	TCGA-A2-A04N-01A-11D-A10Y-09		207498015	41752606	1	670										
REG1B	0	genome.wustl.edu	37	chr2	79314722	79314722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	aggagatcagcatgaagaacGagttggtctgagccatgctt	13	7	2	4			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	2	79314722	79314722	G	A	SNP	REG1B	ENST00000305089	human	ensembl	69_37n	-1	known	missense	c.17	p.S6L	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	-	no_errors	REG1B	HGNC	ENSG00000172023	196	0	0	130	30	18.75	-	-	-	A	79314722	G	A	79314722	3	1	14	1	0	0	0	0	1	0	0	0	13294	1059	37	1	503	1	REG1B	2	79314722	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09		79314722	163884651	2	671										
SCN2A	0	genome.wustl.edu	37	chr2	166201098	166201098	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	agttggcaaaatcttggccaActctaaatatgctaattaag	7	7	2	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	2	166201098	166201098	A	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.2596	p.T866P	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	126	0	0	97	23	19.01	-	-	-	C	166201098	A	C	166201098	3	2	14	1	0	0	0	0	1	0	0	0	14004	43	2	5	2750	5	SCN2A	2	166201098	Missense_Mutation	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09	86886376	166201098	76998275	3	672										
TTN	0	genome.wustl.edu	37	chr2	179640414	179640414	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ggtttaaaagttggaatcgtGattttgccttcttcggcaag	11	6	1	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	2	179640414	179640414	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.6177	p.I2059	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	224	0	0	169	27	13.78	-	-	-	T	179640414	G	T	179640414	2	4	14	1	0	0	0	0	0	0	0	1	16832	1280	45	2		2	TTN	2	179640414	Silent	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	13439316	179640414	63558959	4	673										
PRKAG3	0	genome.wustl.edu	37	chr2	219688550	219688550	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ctgaaggatgtcggagagggAgaccacgcccaagagatgct	15	9	0	4			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	2	219688550	219688550	A	G	SNP	PRKAG3	ENST00000233944	human	ensembl	69_37n	-1	known	missense	c.1405	p.S469P	1.000	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG3	HGNC	ENSG00000115592	46	0	0	49	8	14.04	-	-	-	G	219688550	A	G	219688550	3	3	14	1	0	0	0	0	1	0	0	0	12583	304	11	5	68	5	PRKAG3	2	219688550	Missense_Mutation	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09	40048136	219688550	23510823	5	674										
COL6A6	0	genome.wustl.edu	37	chr3	130292858	130292858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gatggttcaactagcattcaGccaaatgacttcaagaaaat	7	8	3	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	3	130292858	130292858	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.3036	p.Q1012H	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	146	0	0	107	26	19.55	-	-	-	T	130292858	G	T	130292858	3	4	14	1	0	0	0	0	1	0	0	0	3733	962	34	4	3062	4	COL6A6	3	130292858	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09		130292858	67729572	6	675										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0	53	26	32.5	-	-	-	A	178936082	G	A	178936082	3	1	14	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	48643224	178936082	19086348	7	676										
FAM13A	0	genome.wustl.edu	37	chr4	89649699	89649699	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gcccctcacatggacttggaAtcagtgtctctcttgctgat	9	12	4	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	4	89649699	89649699	A	G	SNP	FAM13A	ENST00000264344	human	ensembl	69_37n	-1	known	silent	c.3057	p.D1019	0.247	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	196	0	0	177	52	22.61	-	-	-	G	89649699	A	G	89649699	2	3	14	1	0	0	0	0	0	0	0	1	5492	98	4	5		5	FAM13A	4	89649699	Silent	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09		89649699	101504577	8	677										
SCLT1	0	genome.wustl.edu	37	chr4	129886386	129886386	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gcatttaacaatttaccttaTttctaattgttttatactag	3	6	1	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	4	129886386	129886386	T	A	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.865	p.I289L	0.993	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	159	0	0	112	16	12.5	-	-	-	A	129886386	T	A	129886386	3	1	14	1	0	0	0	0	1	0	0	0	13994	1493	52	5	1245	5	SCLT1	4	129886386	Missense_Mutation	SNP	T	TCGA-A2-A04N-01A-11D-A10Y-09	40236687	129886386	61267890	9	678										
MAP3K1	0	genome.wustl.edu	37	chr5	56168534	56168534	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ttgtagatctaagtggagatCtcatgatttctacaggtaat							TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	5	56168534	56168534	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1490	p.S497fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	132	0	0	56	23	29.11	-	-	-	-	56168534	C	-	56168534	7	5	14	1	0	1	0	1	0	0	0	0	9314	913	32	0	1520	0	MAP3K1	5	56168534	Frame_Shift_Del	DEL	C	TCGA-A2-A04N-01A-11D-A10Y-09		56168534	124746726	10	679										
MAP3K1	0	genome.wustl.edu	37	chr5	56181812	56181814	+	In_Frame_Del	DEL	GTT	GTT	-													0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gagccttcaaagaatcagtaGttattaactacactgaacag							TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	5	56181812	56181814	GTT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	in_frame_del	c.4036_4038	p.V1346in_frame_del	0.983:1.000:0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	175	0	0	111	18	13.74	-	-	-	-	56181814	GTT	-	56181812	7	5	14	1	0	1	0	1	0	0	0	0	9314	1029	36	0	4102	0	MAP3K1	5	56181812	In_Frame_Del	DEL	GTT	TCGA-A2-A04N-01A-11D-A10Y-09	13278	56181812	124733448	11	680			1	1		3	3	2294	N	GTT_G_A	3.547407e-06
MAP3K1	0	genome.wustl.edu	37	chr5	56183211	56183211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gtgtttgttgacaggtgccaAtttgctaattgacagcactg	11	7	0	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	5	56183211	56183211	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.4121	p.N1374S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	168	0	0	136	25	15.53	-	-	-	G	56183211	A	G	56183211	3	3	14	1	0	0	0	0	1	0	0	0	9314	101	4	5	4191	5	MAP3K1	5	56183211	Missense_Mutation	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09	1399	56183211	124732049	12	681			1	1		3	3	2294	N	GTT_G_A	3.547407e-06
MAP3K1	0	genome.wustl.edu	37	chr5	56184105	56184105	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tgatgtatggagtgttggctGtgctattatagaaatggctt	13	3	0	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	5	56184105	56184105	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.4310	p.C1437F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	352	0	0	225	43	16.04	-	-	-	T	56184105	G	T	56184105	3	4	14	1	0	0	0	0	1	0	0	0	9314	1377	48	4	4384	4	MAP3K1	5	56184105	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	894	56184105	124731155	13	682			1	1		3	3	2294	N	GTT_G_A	3.547407e-06
CHN2	0	genome.wustl.edu	37	chr7	29535591	29535591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	cacacgttccgaggcccacaCtggtgtgaatattgtgccaa	10	12	0	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	7	29535591	29535591	C	A	SNP	CHN2	ENST00000539406	human	ensembl	69_37n	1	known	missense	c.903	p.H301Q	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN2	HGNC	ENSG00000106069	109	0	0	89	17	16.04	-	-	-	A	29535591	C	A	29535591	3	1	14	1	0	0	0	0	1	0	0	0	3392	564	20	4	876	4	CHN2	7	29535591	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		29535591	129603072	14	683										
WRN	0	genome.wustl.edu	37	chr8	30945377	30945379	+	In_Frame_Del	DEL	AAG	AAG	-													0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	aaatctgggtcttcctactaAagaagaagaagaagatgatg							TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	8	30945377	30945379	AAG	-	DEL	WRN	ENST00000298139	human	ensembl	69_37n	1	known	in_frame_del	c.1517_1519	p.E510in_frame_del	0.904:0.908:0.988	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	78	0	0	37	9	19.57	-	-	-	-	30945379	AAG	-	30945377	7	5	14	1	0	1	0	1	0	0	0	0	17499	14	1	0	1559	0	WRN	8	30945377	In_Frame_Del	DEL	AAG	TCGA-A2-A04N-01A-11D-A10Y-09		30945377	115418645	15	684										
TSNARE1	0	genome.wustl.edu	37	chr8	143356158	143356158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ttacttggtgccggctggctCcagccaggagctggcgggct	16	12	0	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	8	143356158	143356158	C	T	SNP	TSNARE1	ENST00000307180	human	ensembl	69_37n	-1	known	missense	c.1430	p.G477E	0.984	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	13	0	0	19	10	34.48	-	-	-	T	143356158	C	T	143356158	3	4	14	1	0	0	0	0	1	0	0	0	16726	855	30	2	119	2	TSNARE1	8	143356158	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09	112410781	143356158	3007864	16	685										
MYO3A	0	genome.wustl.edu	37	chr10	26409687	26409687	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ttctgtggcaactgaacaccAgattgacaagagccacattt	8	10	1	4			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	10	26409687	26409687	A	G	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.1859	p.Q620R	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	185	0	0	123	39	24.07	-	-	-	G	26409687	A	G	26409687	3	3	14	1	0	0	0	0	1	0	0	0	10148	188	7	5	1921	5	MYO3A	10	26409687	Missense_Mutation	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09		26409687	109125060	17	686										
DHX32	0	genome.wustl.edu	37	chr10	127527669	127527669	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ggaagctcgattcgcttgatAatttctaagagttcagctcg	10	8	2	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	10	127527669	127527669	A	G	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	silent	c.1782	p.I594	0.270	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	130	0	0	95	13	12.04	-	-	-	G	127527669	A	G	127527669	2	3	14	1	0	0	0	0	0	0	0	1	4541	358	13	5		5	DHX32	10	127527669	Silent	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09	101117982	127527669	8007078	18	687										
KIRREL3	0	genome.wustl.edu	37	chr11	126294697	126294697	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tggaactcccgctcacaaagCtcgatggacgagctgcccat	10	14	1	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	11	126294697	126294697	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	69_37n	-1	known	silent	c.2115	p.E705	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL3	HGNC	ENSG00000149571	95	0	0	120	15	11.11	-	-	-	T	126294697	C	T	126294697	2	4	14	1	0	0	0	0	0	0	0	1	8379	796	28	4		4	KIRREL3	11	126294697	Silent	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		126294697	8711819	19	688										
RNFT2	0	genome.wustl.edu	37	chr12	117178862	117178862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tgttaaggaagatgcagagaCgccacagcagcaacacggat	12	9	0	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	12	117178862	117178862	C	T	SNP	RNFT2	ENST00000257575	human	ensembl	69_37n	1	known	missense	c.46	p.R16C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT2	HGNC	ENSG00000135119	223	0	0	178	48	21.15	-	-	-	T	117178862	C	T	117178862	3	4	14	1	0	0	0	0	1	0	0	0	13588	536	19	1	52	1	RNFT2	12	117178862	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		117178862	16673033	20	689										
SLC7A8	0	genome.wustl.edu	37	chr14	23609769	23609769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tgaaggaaagccagtgcgacGaggccgatgtcaggttcctg	15	9	1	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	14	23609769	23609769	G	A	SNP	SLC7A8	ENST00000339733	human	ensembl	69_37n	-1	known	missense	c.335	p.S112L	0.996	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC7A8	HGNC	ENSG00000092068	104	0	0	82	22	21.15	-	-	-	A	23609769	G	A	23609769	3	1	14	1	0	0	0	0	1	0	0	0	14793	1045	37	1	936	1	SLC7A8	14	23609769	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09		23609769	83739771	21	690										
EML5	0	genome.wustl.edu	37	chr14	89172755	89172755	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gagctgaatggccaatatatTttctaaacttggcccctata	7	9	1	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	14	89172755	89172755	T	A	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.1673	p.K558I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	72	0	0	51	14	21.54	-	-	-	A	89172755	T	A	89172755	3	1	14	1	0	0	0	0	1	0	0	0	5137	1841	64	5	4392	5	EML5	14	89172755	Missense_Mutation	SNP	T	TCGA-A2-A04N-01A-11D-A10Y-09	65562986	89172755	18176785	22	691										
TCF12	0	genome.wustl.edu	37	chr15	57554331	57554331	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	actctgtcagtctcaatggcAatcattcagtcctgtctagt	7	11	6	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	15	57554331	57554331	A	C	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.1507	p.N503H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	124	0	0	76	23	23.23	-	-	-	C	57554331	A	C	57554331	3	2	14	1	0	0	0	0	1	0	0	0	15782	130	5	5	1642	5	TCF12	15	57554331	Missense_Mutation	SNP	A	TCGA-A2-A04N-01A-11D-A10Y-09		57554331	44977061	23	692										
UNC45B	0	genome.wustl.edu	37	chr17	33496946	33496946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	aaaaactggccaaacagtgtCgcaagtaagggggctgtgtt	13	7	0	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	17	33496946	33496946	C	T	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	1	known	missense	c.1543	p.R515C	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	82	0	0	68	9	11.54	-	-	-	T	33496946	C	T	33496946	3	4	14	1	0	0	0	0	1	0	0	0	17086	884	31	1	1581	1	UNC45B	17	33496946	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		33496946	47698264	24	693										
GDPD1	0	genome.wustl.edu	37	chr17	57334498	57334498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ctcagcatgccagtgtgaagGaaaagataaccgaattccat	9	9	1	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	17	57334498	57334498	G	A	SNP	GDPD1	ENST00000284116	human	ensembl	69_37n	1	known	missense	c.383	p.G128E	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	177	0	0	108	26	19.4	-	-	-	A	57334498	G	A	57334498	3	1	14	1	0	0	0	0	1	0	0	0	6375	1174	41	2	401	2	GDPD1	17	57334498	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	23837552	57334498	23860712	25	694										
LAMA1	0	genome.wustl.edu	37	chr18	7046346	7046346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	cacatgcctccaacagaaatGtcctttattgaataataata	4	9	0	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	18	7046346	7046346	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.789	p.D263	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	119	0	0	81	17	17.17	-	-	-	A	7046346	G	A	7046346	2	1	14	1	0	0	0	0	0	0	0	1	8659	1368	48	4		4	LAMA1	18	7046346	Silent	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09		7046346	71030902	26	695										
PIK3C3	0	genome.wustl.edu	37	chr18	39613908	39613908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	aggaataattccggaaacagCtacactgtttaaagtaattg	8	6	0	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	18	39613908	39613908	C	A	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.1826	p.A609D	1.000	superfamily_Kinase-like_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	158	0	0	93	24	20.51	-	-	-	A	39613908	C	A	39613908	3	1	14	1	0	0	0	0	1	0	0	0	11986	797	28	4	1888	4	PIK3C3	18	39613908	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09	32567562	39613908	38463340	27	696										
MYO5B	0	genome.wustl.edu	37	chr18	47402068	47402068	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ttcacgtacctggactttctTgctgtcctgctgttctctct	7	13	4	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	18	47402068	47402068	T	G	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.3526	p.K1176Q	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	247	0	0	217	43	16.48	-	-	-	G	47402068	T	G	47402068	3	3	14	1	0	0	0	0	1	0	0	0	10151	1821	63	5	2080	5	MYO5B	18	47402068	Missense_Mutation	SNP	T	TCGA-A2-A04N-01A-11D-A10Y-09	7788160	47402068	30675180	28	697										
MUC16	0	genome.wustl.edu	37	chr19	9088087	9088087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tgggtgtgtttgttgattcaGggtaggtgctgagggttgga	19	2	1	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	19	9088087	9088087	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.3728	p.P1243H	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	252	0	0	254	32	11.15	-	-	-	T	9088087	G	T	9088087	3	4	14	1	0	0	0	0	1	0	0	0	10045	1000	35	4	40131	4	MUC16	19	9088087	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09		9088087	50040896	29	698										
ZNF791	0	genome.wustl.edu	37	chr19	12734520	12734520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	attggatgtttcaggactcaGtggcttttgaggatgtgtct	13	5	3	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	19	12734520	12734520	G	T	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.10	p.V4L	0.887	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	219	0	0	113	32	22.07	-	-	-	T	12734520	G	T	12734520	3	4	14	1	0	0	0	0	1	0	0	0	18256	1029	36	4	16	4	ZNF791	19	12734520	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	3646433	12734520	46394463	30	699										
ZNF461	0	genome.wustl.edu	37	chr19	37129666	37129666	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ctatgattaaacgccttcccGcattgataaggtttctttcc	6	11	1	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	19	37129666	37129666	G	A	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	silent	c.1581	p.C527	0.133	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	200	0	0	150	29	16.2	-	-	-	A	37129666	G	A	37129666	2	1	14	1	0	0	0	0	0	0	0	1	18021	1079	38	1		1	ZNF461	19	37129666	Silent	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	24395146	37129666	21999317	31	700										
KIF16B	0	genome.wustl.edu	37	chr20	16474996	16474996	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	tccttggtcaattcttgaacCtgaaaagaaaaatatacata	5	7	2	3			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	20	16474996	16474996	C	A	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	splice_site	c.1243-1	e12-1	1.000	-	-	-	no_errors	KIF16B	HGNC	ENSG00000089177	269	0	0	180	30	14.29	-	-	-	A	16474996	C	A	16474996	5	1	14	1	0	0	0	0	0	0	1	0	8330	695	24	4	2771	4	KIF16B	20	16474996	Splice_Site	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		16474996	46550524	32	701										
ASXL1	0	genome.wustl.edu	37	chr20	31021535	31021535	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	acagaattcctagcctgcctCaggaaactgtggatcaggaa	10	10	2	1			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	20	31021535	31021535	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	nonsense	c.1534	p.Q512*	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	66	0	0	41	7	14.58	-	-	-	T	31021535	C	T	31021535	4	4	14	1	0	0	0	0	0	1	0	0	1070	827	29	2	1586	2	ASXL1	20	31021535	Nonsense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09	14546539	31021535	32003985	33	702										
TOX2	0	genome.wustl.edu	37	chr20	42697311	42697311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ctgctccccagggacaaatcGctctacctcacctaatcccg	6	18	2	0			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	20	42697311	42697311	G	A	SNP	TOX2	ENST00000413823	human	ensembl	69_37n	1	known	missense	c.326	p.R109H	0.979	NULL	NULL	-	no_start_codon	TOX2	HGNC	ENSG00000124191	191	0	0	147	41	21.69	-	-	-	A	42697311	G	A	42697311	3	1	14	1	0	0	0	0	1	0	0	0	16474	1074	38	1	1670	1	TOX2	20	42697311	Missense_Mutation	SNP	G	TCGA-A2-A04N-01A-11D-A10Y-09	11675776	42697311	20328209	34	703										
PCNT	0	genome.wustl.edu	37	chr21	47821574	47821574	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	gcctccttcgggcagccctcCtgagggtccagaaatacagt	11	14	0	2			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	21	47821574	47821574	C	T	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.4901	p.P1634L	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	54	0	0	39	7	14.89	-	-	-	T	47821574	C	T	47821574	3	4	14	1	0	0	0	0	1	0	0	0	11663	681	24	4	5003	4	PCNT	21	47821574	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		47821574	308321	35	704										
MAGEE2	0	genome.wustl.edu	37	chrX	75004120	75004120	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	3	0.724134130450569	1.36466165413534	6.36842105263158	0.979757085020243	1	1	0	ttgtgatttccctgtgggctCtagagccccacaagaactca	9	12	2	3			TCGA-A2-A04N-01A-11D-A10Y-09	TCGA-A2-A04N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	389dd52b-a7b7-46f0-83ae-308e485466a8	6bc7c00e-9bf1-4d08-b69e-a73942d9afd5	X	75004120	75004120	C	G	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.767	p.R256T	0.053	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	76	0	0	69	14	16.87	-	-	-	G	75004120	C	G	75004120	3	3	14	1	0	0	0	0	1	0	0	0	9257	913	32	2	808	2	MAGEE2	23	75004120	Missense_Mutation	SNP	C	TCGA-A2-A04N-01A-11D-A10Y-09		75004120	80266440	36	705										
UBE2J2	0	genome.wustl.edu	37	chr1	1190626	1190626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gcacgtacttgaccgtgtaaGcaaaggctgcaaacccaact	9	12	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	1190626	1190626	G	A	SNP	UBE2J2	ENST00000400930	human	ensembl	69_37n	-1	known	missense	c.785	p.A262V	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087	22	0	0	35	20	36.36	-	-	-	A	1190626	G	A	1190626	3	1	15	1	0	0	0	0	1	0	0	0	16958	971	34	4	46	4	UBE2J2	1	1190626	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09		1190626	248059995	1	706										
NPHP4	0	genome.wustl.edu	37	chr1	5926438	5926438	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	agcctgtgcacttacgagtaAatgatgacaaagaagtcttt	9	7	1	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	5926438	5926438	A	T	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	silent	c.3639	p.I1213	0.453	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	71	0	0	73	39	34.21	-	-	-	T	5926438	A	T	5926438	2	4	15	1	0	0	0	0	0	0	0	1	10653	10	1	5		5	NPHP4	1	5926438	Silent	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	4735812	5926438	243324183	2	707										
NOL9	0	genome.wustl.edu	37	chr1	6593398	6593398	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tctctcttgtaagcgctgaaCacatatttcactatgtcaat	5	10	4	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	6593398	6593398	C	G	SNP	NOL9	ENST00000377705	human	ensembl	69_37n	-1	known	silent	c.1179	p.V393	1.000	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	NOL9	HGNC	ENSG00000162408	99	0	0	141	22	13.5	-	-	-	G	6593398	C	G	6593398	2	3	15	1	0	0	0	0	0	0	0	1	10600	465	17	4		4	NOL9	1	6593398	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	666960	6593398	242657223	3	708										
GJA4	0	genome.wustl.edu	37	chr1	35260061	35260061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gctactgggtgctgcagttcCtcttcgtcagcacacccacc	9	16	2	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	35260061	35260061	C	G	SNP	GJA4	ENST00000342280	human	ensembl	69_37n	1	known	missense	c.247	p.L83V	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513	97	0	0	92	30	24.59	-	-	-	G	35260061	C	G	35260061	3	3	15	1	0	0	0	0	1	0	0	0	6455	681	24	4	249	4	GJA4	1	35260061	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	28666663	35260061	213990560	4	709										
EIF2C4	0	genome.wustl.edu	37	chr1	36298080	36298080	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	accagggtgtctgggacatgCgaggaaagcagttttatgct	14	7	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	36298080	36298080	C	G	SNP	EIF2C4	ENST00000373210	human	ensembl	69_37n	1	known	missense	c.1288	p.R430G	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C4	HGNC	ENSG00000134698	249	0	0	244	94	27.81	-	-	-	G	36298080	C	G	36298080	3	3	15	1	0	0	0	0	1	0	0	0	5043	760	27	3	1330	3	EIF2C4	1	36298080	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	1038019	36298080	212952541	5	710										
HEYL	0	genome.wustl.edu	37	chr1	40092514	40092514	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tctgcgaaggggagcggttcGgagggctgggatggggtaag	22	5	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	40092514	40092514	G	A	SNP	HEYL	ENST00000372852	human	ensembl	69_37n	-1	known	nonsense	c.652	p.R218*	0.066	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEYL	HGNC	ENSG00000163909	190	0	0	106	12	10.17	-	-	-	A	40092514	G	A	40092514	4	1	15	1	0	0	0	0	0	1	0	0	7131	1124	39	1	338	1	HEYL	1	40092514	Nonsense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	3794434	40092514	209158107	6	711										
HIPK1	0	genome.wustl.edu	37	chr1	114510483	114510483	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ggccactgctcagcctctgaAtgttggtgttgcccatgttg	12	11	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	114510483	114510483	A	G	SNP	HIPK1	ENST00000369558	human	ensembl	69_37n	1	known	missense	c.2477	p.N826S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349	119	0	0	130	89	40.64	-	-	-	G	114510483	A	G	114510483	3	3	15	1	0	0	0	0	1	0	0	0	7167	101	4	5	2537	5	HIPK1	1	114510483	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	74417969	114510483	134740138	7	712										
SETDB1	0	genome.wustl.edu	37	chr1	150933074	150933074	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	atgactttgcagacaaggagGgtctggaaatgggtgatgag	16	4	1	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	150933074	150933074	G	T	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.2536	p.G846C	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	184	1	0.54	80	14	14.89	-	-	-	T	150933074	G	T	150933074	3	4	15	1	0	0	0	0	1	0	0	0	14226	1232	43	4	2594	4	SETDB1	1	150933074	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	36422591	150933074	98317547	8	713										
FASLG	0	genome.wustl.edu	37	chr1	172628648	172628648	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gattgggcctggggatgtttCagctcttccacctacagaag	12	10	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	172628648	172628648	C	A	SNP	FASLG	ENST00000367721	human	ensembl	69_37n	1	known	missense	c.307	p.Q103K	1.000	prints_Fas_ligand	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,prints_Fas_ligand,prints_TNF_a/b/c,prints_TNF_C,pfscan_TNF	-	no_errors	FASLG	HGNC	ENSG00000117560	288	0	0	165	47	22.17	-	-	-	A	172628648	C	A	172628648	3	1	15	1	0	0	0	0	1	0	0	0	5728	827	29	2	309	2	FASLG	1	172628648	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	21695574	172628648	76621973	9	714										
FAM5C	0	genome.wustl.edu	37	chr1	190250700	190250700	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	agagccgtacctcccagagtAgcagatagcaagaaatgtgt	11	9	0	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	190250700	190250700	A	G	SNP	FAM5C	ENST00000445957	human	ensembl	69_37n	-1	known	missense	c.266	p.L89P	0.965	NULL	NULL	-	no_stop_codon	FAM5C	HGNC	ENSG00000162670	51	0	0	117	16	12.03	-	-	-	G	190250700	A	G	190250700	3	3	15	1	0	0	0	0	1	0	0	0	5639	407	15	5	1907	5	FAM5C	1	190250700	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	17622052	190250700	58999921	10	715										
CYB5R1	0	genome.wustl.edu	37	chr1	202935062	202935062	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	atcctcatcactggtgacagGagtgtatggcctgatgacca	11	10	2	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	202935062	202935062	G	C	SNP	CYB5R1	ENST00000367249	human	ensembl	69_37n	-1	known	missense	c.298	p.P100A	1.000	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	-	no_errors	CYB5R1	HGNC	ENSG00000159348	185	0	0	199	108	35.06	-	-	-	C	202935062	G	C	202935062	3	2	15	1	0	0	0	0	1	0	0	0	4157	1174	41	2	643	2	CYB5R1	1	202935062	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	12684362	202935062	46315559	11	716										
RYR2	0	genome.wustl.edu	37	chr1	237586392	237586392	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gtcctaactgttttcattagGtggagtggaagccacataag	11	7	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	1	237586392	237586392	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.843	p.A281	0.996	pfam_MIR,superfamily_MIR,prints_Ryan_recept	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	73	0	0	108	48	30.77	-	-	-	T	237586392	G	T	237586392	2	4	15	1	0	0	0	0	0	0	0	1	13855	1275	44	4		4	RYR2	1	237586392	Silent	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	34651330	237586392	11664229	12	717										
HS1BP3	0	genome.wustl.edu	37	chr2	20823621	20823621	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gctctgtccagaacactctcAgagctggccaagcgccgctg	11	15	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	20823621	20823621	A	C	SNP	HS1BP3	ENST00000445102	human	ensembl	69_37n	-1	putative	missense	c.332	p.L111R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HS1BP3	HGNC	ENSG00000118960	31	0	0	57	12	17.39	-	-	-	C	20823621	A	C	20823621	3	2	15	1	0	0	0	0	1	0	0	0	7412	203	7	5		5	HS1BP3	2	20823621	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09		20823621	222375752	13	718										
C2orf18	0	genome.wustl.edu	37	chr2	26998354	26998354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctgaacatgaccagtgcctcCagcttccagatgctgcgggg	12	13	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	26998354	26998354	C	T	SNP	C2orf18	ENST00000344420	human	ensembl	69_37n	1	known	silent	c.345	p.S115	1.000	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_UAA,pirsf_UCP036436	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436	-	no_errors	C2orf18	HGNC	ENSG00000213699	75	0	0	166	102	38.06	-	-	-	T	26998354	C	T	26998354	2	4	15	1	0	0	0	0	0	0	0	1	2178	581	21	4		4	C2orf18	2	26998354	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	6174733	26998354	216201019	14	719										
SOS1	0	genome.wustl.edu	37	chr2	39281774	39281774	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cattagctgaaaacaattttGaattggagacaaagggctct	9	6	1	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	39281774	39281774	G	C	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	nonsense	c.701	p.S234*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	70	0	0	76	16	17.39	-	-	-	C	39281774	G	C	39281774	4	2	15	1	0	0	0	0	0	1	0	0	15025	1294	45	2	3376	2	SOS1	2	39281774	Nonsense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	12283420	39281774	203917599	15	720										
PLEKHB2	0	genome.wustl.edu	37	chr2	131904268	131904268	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cgagagcgctatcgagacaaCgacagcgacctggcactggg	14	12	0	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	131904268	131904268	C	G	SNP	PLEKHB2	ENST00000403716	human	ensembl	69_37n	1	known	missense	c.591	p.N197K	0.581	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	121	0	0	88	32	26.67	-	-	-	G	131904268	C	G	131904268	3	3	15	1	0	0	0	0	1	0	0	0	12139	535	19	3	617	3	PLEKHB2	2	131904268	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	92622494	131904268	111295105	16	721										
ACVR2A	0	genome.wustl.edu	37	chr2	148657066	148657066	+	Frame_Shift_Del	DEL	T	T	-													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aaagacagccctgaagtataTttttgttgctgtgagggcaa							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	148657066	148657066	T	-	DEL	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	frame_shift_del	c.303	p.C103fs	1.000	pfam_Activin_rcpt,prints_Activin_II/TGFBeta-II_recpt	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	136	0	0	182	120	39.47	-	-	-	-	148657066	T	-	148657066	7	5	15	1	0	1	0	1	0	0	0	0	223	1500	52	0	313	0	ACVR2A	2	148657066	Frame_Shift_Del	DEL	T	TCGA-A2-A04P-01A-31D-A128-09	16752798	148657066	94542307	17	722										
TANC1	0	genome.wustl.edu	37	chr2	160035597	160035597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aggcgagacaaaacccgcatGttctgccacccgtccttcag	9	15	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	160035597	160035597	G	A	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.2433	p.M811I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	42	0	0	42	10	19.23	-	-	-	A	160035597	G	A	160035597	3	1	15	1	0	0	0	0	1	0	0	0	15636	1377	48	4	2479	4	TANC1	2	160035597	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	11378531	160035597	83163776	18	723										
USP37	0	genome.wustl.edu	37	chr2	219411017	219411017	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tatcattcttttcctcttttCagtactacagagaacaaaga	4	9	4	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	219411017	219411017	C	G	SNP	USP37	ENST00000258399	human	ensembl	69_37n	-1	known	missense	c.607	p.E203Q	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP37	HGNC	ENSG00000135913	174	0	0	221	28	11.24	-	-	-	G	219411017	C	G	219411017	3	3	15	1	0	0	0	0	1	0	0	0	17165	835	29	2	2408	2	USP37	2	219411017	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	59375420	219411017	23788356	19	724										
PSMD1	0	genome.wustl.edu	37	chr2	231927249	231927249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	atacgaagatgaaggtttccGgagtcggcagtttgcagcct	13	8	0	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	231927249	231927249	G	A	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.164	p.R55Q	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	115	0	0	70	181	72.11	-	-	-	A	231927249	G	A	231927249	3	1	15	1	0	0	0	0	1	0	0	0	12772	1116	39	1	178	1	PSMD1	2	231927249	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	12516232	231927249	11272124	20	725										
RBM44	0	genome.wustl.edu	37	chr2	238726909	238726909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tttcacaatataggagaaatGtgtactaaatcattgacaga	7	5	2	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	238726909	238726909	G	A	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.1350	p.M450I	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	53	0	0	40	88	68.75	-	-	-	A	238726909	G	A	238726909	3	1	15	1	0	0	0	0	1	0	0	0	13221	1377	48	4	1356	4	RBM44	2	238726909	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	6799660	238726909	4472464	21	726										
ILKAP	0	genome.wustl.edu	37	chr2	239079209	239079209	+	Frame_Shift_Del	DEL	C	C	-													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccgcaccaccatcacagtgaCgttgtcggccgagccccgct							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	2	239079209	239079209	C	-	DEL	ILKAP	ENST00000254654	human	ensembl	69_37n	-1	known	frame_shift_del	c.1147	p.V383fs	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	ILKAP	HGNC	ENSG00000132323	23	0	0	8	17	65.38	-	-	-	-	239079209	C	-	239079209	7	5	15	1	0	1	0	1	0	0	0	0	7768	536	19	0	35	0	ILKAP	2	239079209	Frame_Shift_Del	DEL	C	TCGA-A2-A04P-01A-31D-A128-09	352300	239079209	4120164	22	727										
IQCF1	0	genome.wustl.edu	37	chr3	51928941	51928941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gaagggaatacactctgtcaCaatgcaaggccctgagtcca	10	11	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	3	51928941	51928941	C	A	SNP	IQCF1	ENST00000310914	human	ensembl	69_37n	-1	known	missense	c.583	p.V195L	0.078	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF1	HGNC	ENSG00000173389	107	0	0	15	27	64.29	-	-	-	A	51928941	C	A	51928941	3	1	15	1	0	0	0	0	1	0	0	0	7861	478	17	4	38	4	IQCF1	3	51928941	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		51928941	146093489	23	728										
ROBO2	0	genome.wustl.edu	37	chr3	77651571	77651571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gcctgatccacaatggaaaaGctcaattcagcaaaaaacag	7	10	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	3	77651571	77651571	G	T	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.3065	p.S1022I	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	77	0	0	60	96	61.54	-	-	-	T	77651571	G	T	77651571	3	4	15	1	0	0	0	0	1	0	0	0	13600	971	34	4	3145	4	ROBO2	3	77651571	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	25722630	77651571	120370859	24	729										
CCRL1	0	genome.wustl.edu	37	chr3	132320043	132320043	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tctgccgagccatagacatcAtctactccctgatcaccagc	6	16	4	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	3	132320043	132320043	A	G	SNP	CCRL1	ENST00000249887	human	ensembl	69_37n	1	known	missense	c.802	p.I268V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR11,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCRL1	HGNC	ENSG00000129048	288	0	0	156	60	27.78	-	-	-	G	132320043	A	G	132320043	3	3	15	1	0	0	0	0	1	0	0	0	2978	217	8	5	804	5	CCRL1	3	132320043	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	54668472	132320043	65702387	25	730										
KCNAB1	0	genome.wustl.edu	37	chr3	155838561	155838561	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tagtccctcaggggaaagccAgctcagggcgcgtcaactgg	14	12	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	3	155838561	155838561	A	T	SNP	KCNAB1	ENST00000490337	human	ensembl	69_37n	1	known	missense	c.161	p.Q54L	0.997	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282	93	0	0	58	15	20.55	-	-	-	T	155838561	A	T	155838561	3	4	15	1	0	0	0	0	1	0	0	0	8063	188	7	5	163	5	KCNAB1	3	155838561	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	23518518	155838561	42183869	26	731										
PIK3CA	0	genome.wustl.edu	37	chr3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	attttttgatgaaacaagacGactttgtgaccttcggcttt	8	7	0	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	3	178916876	178916876	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.263	p.R88Q	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	89	0	0	60	3294	98.15	-	-	-	A	178916876	G	A	178916876	3	1	15	1	0	0	0	0	1	0	0	0	11987	1058	37	1	265	1	PIK3CA	3	178916876	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	23078315	178916876	19105554	27	732										
ZNF595	0	genome.wustl.edu	37	chr4	86522	86522	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tgtgaagaatgtggcaaagcCtttacttggtcctcatccct	9	10	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	4	86522	86522	C	G	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.886	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	102	0	0	98	32	24.62	-	-	-	G	86522	C	G	86522	1	3	15	0	1	0	0	0	0	0	0	0	18121	681	24	4		4	ZNF595	4	86522	RNA	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		86522	191067754	28	733										
UNC5C	0	genome.wustl.edu	37	chr4	96166163	96166163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tacaggctattttctgcacaCtctgcccttcacagaaggca	7	13	3	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	4	96166163	96166163	C	G	SNP	UNC5C	ENST00000453304	human	ensembl	69_37n	-1	known	missense	c.908	p.S303T	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Death,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5C	HGNC	ENSG00000182168	133	0	0	66	100	60.24	-	-	-	G	96166163	C	G	96166163	3	3	15	1	0	0	0	0	1	0	0	0	17090	565	20	4	1931	4	UNC5C	4	96166163	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	96079641	96166163	94988113	29	734										
ADAD1	0	genome.wustl.edu	37	chr4	123304955	123304955	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttctgagttctttttcaaggTaatgttatgggaccatattt	8	5	3	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	4	123304955	123304955	T	G	SNP	ADAD1	ENST00000296513	human	ensembl	69_37n	1	known	silent	c.363	p.G121	0.989	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	226	0	0	258	156	37.68	-	-	-	G	123304955	T	G	123304955	2	3	15	1	0	0	0	0	0	0	0	1	231	1652	57	5		5	ADAD1	4	123304955	Silent	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	27138792	123304955	67849321	30	735										
HTR1A	0	genome.wustl.edu	37	chr5	63257274	63257274	+	Frame_Shift_Del	DEL	G	G	-													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	acctgatacagcgcggccatGggcagcaccaacaccgacac							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	5	63257274	63257274	G	-	DEL	HTR1A	ENST00000323865	human	ensembl	69_37n	-1	known	frame_shift_del	c.273	p.M92fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394	100	0	0	9	21	65.62	-	-	-	-	63257274	G	-	63257274	7	5	15	1	0	1	0	1	0	0	0	0	7490	1335	47	0	998	0	HTR1A	5	63257274	Frame_Shift_Del	DEL	G	TCGA-A2-A04P-01A-31D-A128-09		63257274	117657986	31	736										
PDLIM4	0	genome.wustl.edu	37	chr5	131607861	131607861	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccacgccaaggcgcgcgtgaAgccgcccgagggctacgacg	15	16	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	5	131607861	131607861	A	T	SNP	PDLIM4	ENST00000253754	human	ensembl	69_37n	1	known	missense	c.932	p.K311M	1.000	pfscan_Znf_LIM	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435	64	0	0	9	20	68.97	-	-	-	T	131607861	A	T	131607861	3	4	15	1	0	0	0	0	1	0	0	0	11755	72	3	5	958	5	PDLIM4	5	131607861	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	68350587	131607861	49307399	32	737										
PCDHA13	0	genome.wustl.edu	37	chr5	140263402	140263402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tgcacgcggagagcggcaagGtgtacgcgctgcagccgttg	17	11	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	5	140263402	140263402	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1549	p.V517M	0.783	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	38	0	0	12	18	60	-	-	-	A	140263402	G	A	140263402	3	1	15	1	0	0	0	0	1	0	0	0	11596	1261	44	4	1551	4	PCDHA13	5	140263402	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	8655541	140263402	40651858	33	738										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769441	140769441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cgttgcacctggtcttcgccGacagcttgcaggaggtgctg	14	12	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	5	140769441	140769441	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.1990	p.D664N	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	54	0	0	43	98	68.53	-	-	-	A	140769441	G	A	140769441	3	1	15	1	0	0	0	0	1	0	0	0	11638	1058	37	1	1992	1	PCDHGB4	5	140769441	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	506039	140769441	40145819	34	739										
RBM27	0	genome.wustl.edu	37	chr5	145610352	145610352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gtctattcccagcactgttaCtgtgatcgcacctgctcacc	7	15	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	5	145610352	145610352	C	A	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.722	p.T241N	1.000	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	212	0	0	45	141	75.81	-	-	-	A	145610352	C	A	145610352	3	1	15	1	0	0	0	0	1	0	0	0	13210	565	20	4	744	4	RBM27	5	145610352	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	4840911	145610352	35304908	35	740										
FARS2	0	genome.wustl.edu	37	chr6	5431360	5431360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	actttcatggagaatggctgGaagttcttggctgcggggtg	16	6	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	6	5431360	5431360	G	C	SNP	FARS2	ENST00000274680	human	ensembl	69_37n	1	known	missense	c.859	p.E287Q	1.000	pfam_Phenylalanyl-tRNA_Synthase,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982	304	0	0	496	72	12.68	-	-	-	C	5431360	G	C	5431360	3	2	15	1	0	0	0	0	1	0	0	0	5724	1175	41	2	869	2	FARS2	6	5431360	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09		5431360	165683707	36	741										
SRPK1	0	genome.wustl.edu	37	chr6	35810362	35810362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gaggttcaaacaaatagtcaCctgtggccagttcaaaggcc	10	10	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	6	35810362	35810362	C	A	SNP	SRPK1	ENST00000373825	human	ensembl	69_37n	-1	known	missense	c.1640	p.G547V	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	108	0	0	75	53	41.41	-	-	-	A	35810362	C	A	35810362	3	1	15	1	0	0	0	0	1	0	0	0	15250	507	18	4	339	4	SRPK1	6	35810362	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	30379002	35810362	135304705	37	742										
KLHL32	0	genome.wustl.edu	37	chr6	97533213	97533213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cctgagtgaagagcagatctGgcaggtaagggcgctgtgca	16	8	1	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	6	97533213	97533213	G	T	SNP	KLHL32	ENST00000369261	human	ensembl	69_37n	1	known	missense	c.623	p.W208L	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231	170	0	0	50	15	23.08	-	-	-	T	97533213	G	T	97533213	3	4	15	1	0	0	0	0	1	0	0	0	8439	1357	47	4	641	4	KLHL32	6	97533213	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	61722851	97533213	73581854	38	743										
BVES	0	genome.wustl.edu	37	chr6	105573408	105573408	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tggaggcacacggagtggttCaaacaatcgccggtacatgc	13	10	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	6	105573408	105573408	C	T	SNP	BVES	ENST00000314641	human	ensembl	69_37n	-1	known	missense	c.397	p.E133K	1.000	pfam_Popeye_prot	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276	79	0	0	164	35	17.59	-	-	-	T	105573408	C	T	105573408	3	4	15	1	0	0	0	0	1	0	0	0	1584	835	29	2	705	2	BVES	6	105573408	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	8040195	105573408	65541659	39	744										
WTAP	0	genome.wustl.edu	37	chr6	160164703	160164703	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttttgaatcatcagctaatgAtgtaactggcctaagagagt	9	6	2	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	6	160164703	160164703	A	C	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	1	known	missense	c.152	p.D51A	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	78	0	0	135	32	19.16	-	-	-	C	160164703	A	C	160164703	3	2	15	1	0	0	0	0	1	0	0	0	17506	333	12	5	166	5	WTAP	6	160164703	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	54591295	160164703	10950364	40	745										
INTS1	0	genome.wustl.edu	37	chr7	1535175	1535175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aatctggttctggaatgagcGgagcacttccaggtctgaaa	12	8	3	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	1535175	1535175	G	A	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.2110	p.R704C	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	22	0	0	19	20	51.28	-	-	-	A	1535175	G	A	1535175	3	1	15	1	0	0	0	0	1	0	0	0	7829	1116	39	1	4990	1	INTS1	7	1535175	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09		1535175	157603488	41	746										
PDE1C	0	genome.wustl.edu	37	chr7	31887635	31887635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttcatttcctcgtcatcttgCagaaggcgataagctgcact	8	11	3	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	31887635	31887635	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	silent	c.927	p.L309	0.994	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	110	0	0	78	48	38.1	-	-	-	T	31887635	C	T	31887635	2	4	15	1	0	0	0	0	0	0	0	1	11708	697	25	4		4	PDE1C	7	31887635	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	30352460	31887635	127251028	42	747										
OGDH	0	genome.wustl.edu	37	chr7	44734067	44734067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aacgagatggatgagcccatGttcacgcagccgctcatgta	11	11	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	44734067	44734067	G	A	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.1560	p.M520I	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	76	0	0	95	41	30.15	-	-	-	A	44734067	G	A	44734067	3	1	15	1	0	0	0	0	1	0	0	0	10912	1377	48	4	1775	4	OGDH	7	44734067	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	12846432	44734067	114404596	43	748										
GRM3	0	genome.wustl.edu	37	chr7	86468742	86468742	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tcttcattgccaagccatcaCcagtcatctgtgcattgcgc	7	14	5	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	86468742	86468742	C	G	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.1912	p.P638A	0.990	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	147	0	0	172	36	17.31	-	-	-	G	86468742	C	G	86468742	3	3	15	1	0	0	0	0	1	0	0	0	6849	507	18	4	1922	4	GRM3	7	86468742	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	41734675	86468742	72669921	44	749										
AKAP9	0	genome.wustl.edu	37	chr7	91690649	91690649	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aacaagaagcaacagagtccCttaagtgccaagaggaactt	9	9	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	91690649	91690649	C	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.5713	p.L1905V	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	66	0	0	120	24	16.55	-	-	-	G	91690649	C	G	91690649	3	3	15	1	0	0	0	0	1	0	0	0	459	681	24	4	5767	4	AKAP9	7	91690649	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	5221907	91690649	67448014	45	750										
OR9A2	0	genome.wustl.edu	37	chr7	142723943	142723943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gagcgatacatgtagagaaaGatactgtctgcatcccagga	11	8	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	7	142723943	142723943	G	C	SNP	OR9A2	ENST00000350513	human	ensembl	69_37n	-1	known	missense	c.277	p.L93V	0.018	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A2	HGNC	ENSG00000179468	191	0	0	121	92	42.99	-	-	-	C	142723943	G	C	142723943	3	2	15	1	0	0	0	0	1	0	0	0	11321	942	33	2	659	2	OR9A2	7	142723943	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	51033294	142723943	16414720	46	751										
TEX15	0	genome.wustl.edu	37	chr8	30702239	30702239	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttaaaagcagagaactatcaCtggaagataattccactata	6	7	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	8	30702239	30702239	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.4295	p.S1432T	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	111	0	0	75	42	35.9	-	-	-	G	30702239	C	G	30702239	3	3	15	1	0	0	0	0	1	0	0	0	15874	565	20	4	4090	4	TEX15	8	30702239	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		30702239	115661783	47	752										
HOOK3	0	genome.wustl.edu	37	chr8	42819469	42819469	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aacaggttgcagcattgcagGaagagaaaagtagtttgttg	13	4	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	8	42819469	42819469	G	C	SNP	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	missense	c.631	p.E211Q	1.000	pfam_HOOK	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	271	1	0.37	163	56	25.57	-	-	-	C	42819469	G	C	42819469	3	2	15	1	0	0	0	0	1	0	0	0	7335	1175	41	2	665	2	HOOK3	8	42819469	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	12117230	42819469	103544553	48	753										
HGSNAT	0	genome.wustl.edu	37	chr8	43052147	43052147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aaagacatcctgattcgattCactgcttggtgttgtattct	8	8	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	8	43052147	43052147	C	G	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1605	p.F535L	0.030	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	466	0	0	225	30	11.76	-	-	-	G	43052147	C	G	43052147	3	3	15	1	0	0	0	0	1	0	0	0	7139	825	29	2	1579	2	HGSNAT	8	43052147	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	232678	43052147	103311875	49	754										
CNGB3	0	genome.wustl.edu	37	chr8	87751884	87751884	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tttcagactgcattctgaccTtgtatgttggtgtgtggctc	11	8	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	8	87751884	87751884	T	A	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.210	p.Q70H	0.997	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	262	0	0	205	182	46.79	-	-	-	A	87751884	T	A	87751884	3	1	15	1	0	0	0	0	1	0	0	0	3631	1623	56	5	2287	5	CNGB3	8	87751884	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	44699737	87751884	58612138	50	755										
FAM135B	0	genome.wustl.edu	37	chr8	139263115	139263115	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctgctgcagagccaccagggCagcatggacggtcaccgaga	14	13	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	8	139263115	139263115	C	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.511	p.A171S	0.993	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	106	0	0	104	15	12.61	-	-	-	A	139263115	C	A	139263115	3	1	15	1	0	0	0	0	1	0	0	0	5489	710	25	4	3769	4	FAM135B	8	139263115	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	51511231	139263115	7100907	51	756										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69423558	69423558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	agactggctgctgctataagCaaacacagtgaaagtgtgaa	11	7	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	9	69423558	69423558	C	T	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	silent	c.1854	p.S618	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	34	0	0	80	12	13.04	-	-	-	T	69423558	C	T	69423558	2	4	15	1	0	0	0	0	0	0	0	1	650	709	25	4		4	ANKRD20A4	9	69423558	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		69423558	71789873	52	757										
SEMA4D	0	genome.wustl.edu	37	chr9	92017794	92017794	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cccaggacgtacctcatgctGcttctcggagatgttgagtg	12	11	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	9	92017794	92017794	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	nonsense	c.244	p.Q82*	0.996	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	114	0	0	81	23	21.5	-	-	-	A	92017794	G	A	92017794	4	1	15	1	0	0	0	0	0	1	0	0	14122	1328	46	4	2966	4	SEMA4D	9	92017794	Nonsense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	22594236	92017794	49195637	53	758										
TEX10	0	genome.wustl.edu	37	chr9	103065953	103065953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tgctgcaccaagatcgcattGgtcaacatatgagtcctgag	10	10	1	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	9	103065953	103065953	G	A	SNP	TEX10	ENST00000374902	human	ensembl	69_37n	-1	known	silent	c.2637	p.T879	0.999	NULL	pfam_IPI1-like_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	84	0	0	20	25	55.56	-	-	-	A	103065953	G	A	103065953	2	1	15	1	0	0	0	0	0	0	0	1	15867	1335	47	4		4	TEX10	9	103065953	Silent	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	11048159	103065953	38147478	54	759										
RPP38	0	genome.wustl.edu	37	chr10	15145558	15145558	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	aagcagagagaaatgcagcaTtgctgttgatattagtgaga	12	4	0	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	10	15145558	15145558	T	C	SNP	RPP38	ENST00000378197	human	ensembl	69_37n	1	known	missense	c.245	p.I82T	0.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	RPP38	HGNC	ENSG00000152464	93	0	0	82	50	37.59	-	-	-	C	15145558	T	C	15145558	3	2	15	1	0	0	0	0	1	0	0	0	13699	1493	52	5	247	5	RPP38	10	15145558	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09		15145558	120389189	55	760										
C10orf71	0	genome.wustl.edu	37	chr10	50532310	50532310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	catcacacatcaatccccagAaggaccctacagctgacccc	5	18	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	10	50532310	50532310	A	G	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.1720	p.K574E	0.251	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	129	0	0	44	9	16.98	-	-	-	G	50532310	A	G	50532310	3	3	15	1	0	0	0	0	1	0	0	0	1624	247	9	5	1722	5	C10orf71	10	50532310	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	35386752	50532310	85002437	56	761										
ERCC6	0	genome.wustl.edu	37	chr10	50690883	50690883	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttttgcatcggtgagccagaCagaatgatccgatgaggggt	14	7	0	5			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	10	50690883	50690883	C	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	silent	c.2019	p.L673	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	121	0	0	63	28	30.77	-	-	-	A	50690883	C	A	50690883	2	1	15	1	0	0	0	0	0	0	0	1	5254	465	17	4		4	ERCC6	10	50690883	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	158573	50690883	84843864	57	762										
PPRC1	0	genome.wustl.edu	37	chr10	103907133	103907133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccaggtccctctcccccccaCacaagaggtggcgaaggtga	11	16	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	10	103907133	103907133	C	T	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.4384	p.H1462Y	0.974	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	104	0	0	60	8	11.76	-	-	-	T	103907133	C	T	103907133	3	4	15	1	0	0	0	0	1	0	0	0	12487	478	17	4	4418	4	PPRC1	10	103907133	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	53216250	103907133	31627614	58	763										
TDRD1	0	genome.wustl.edu	37	chr10	115964497	115964497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tcaggccataaagtgctttgTagccaatgttatcccagcag	9	10	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	10	115964497	115964497	T	C	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	missense	c.1142	p.V381A	0.868	pfam_Tudor	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	123	0	0	93	36	27.91	-	-	-	C	115964497	T	C	115964497	3	2	15	1	0	0	0	0	1	0	0	0	15825	1638	57	5	1176	5	TDRD1	10	115964497	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	12057364	115964497	19570250	59	764										
SAAL1	0	genome.wustl.edu	37	chr11	18127464	18127464	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gtttccacacctggatgagtCcgctgaggacgccgaagagc	13	12	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	11	18127464	18127464	C	A	SNP	SAAL1	ENST00000524803	human	ensembl	69_37n	-1	known	missense	c.125	p.G42V	0.997	NULL	superfamily_ARM-type_fold	-	no_errors	SAAL1	HGNC	ENSG00000166788	49	0	0	18	8	30.77	-	-	-	A	18127464	C	A	18127464	3	1	15	1	0	0	0	0	1	0	0	0	13887	855	30	2	1347	2	SAAL1	11	18127464	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		18127464	116879052	60	765										
GSTP1	0	genome.wustl.edu	37	chr11	67353658	67353658	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctgtcccagaaccagggaggCaagaccttcattgtgggaga	13	10	1	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	11	67353658	67353658	C	G	SNP	GSTP1	ENST00000398606	human	ensembl	69_37n	1	known	silent	c.420	p.G140	0.901	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_pi	-	no_errors	GSTP1	HGNC	ENSG00000084207	60	0	0	67	22	24.72	-	-	-	G	67353658	C	G	67353658	2	3	15	1	0	0	0	0	0	0	0	1	6895	697	25	4		4	GSTP1	11	67353658	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	49226194	67353658	67652858	61	766										
DYNC2H1	0	genome.wustl.edu	37	chr11	103059309	103059309	+	Silent	SNP	T	T	C													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	attgtggcttctatgtcagcTggaggaagactgggaagaca							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	11	103059309	103059309	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	silent	c.7224	p.A2408	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	123	0	0	87	105	54.69	-	-	-	C	103059309	T	C	103059309	2	2	15	1	0	0	0	0	0	0	0	1	4881	1567	55	5		5	DYNC2H1	11	103059309	Silent	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	35705651	103059309	31947207	62	767	3	2								
DYNC2H1	0	genome.wustl.edu	37	chr11	103059310	103059310	+	Missense_Mutation	SNP	G	G	C													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttgtggcttctatgtcagctGgaggaagactgggaagacat							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	11	103059310	103059310	G	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.7225	p.G2409R	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	127	0	0	87	109	55.61	-	-	-	C	103059310	G	C	103059310	3	2	15	1	0	0	0	0	1	0	0	0	4881	1349	47	4	7399	4	DYNC2H1	11	103059310	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	1	103059310	31947206	63	768	3	2								
TAS2R31	0	genome.wustl.edu	37	chr12	11183563	11183563	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	accagaatgacactcttaacTctcctctttaagtgaagaaa	5	10	3	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	11183563	11183563	T	G	SNP	TAS2R31	ENST00000390675	human	ensembl	69_37n	-1	known	missense	c.372	p.R124S	0.008	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436	159	0	0	85	139	61.78	-	-	-	G	11183563	T	G	11183563	3	3	15	1	0	0	0	0	1	0	0	0	15666	1548	54	5	561	5	TAS2R31	12	11183563	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09		11183563	122668332	64	769										
PTPRO	0	genome.wustl.edu	37	chr12	15637127	15637127	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	attatataatcactctggtaGtggtaaatggaaatgtggtg	11	3	2	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	15637127	15637127	G	C	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	missense	c.295	p.V99L	1.000	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	208	0	0	211	43	16.86	-	-	-	C	15637127	G	C	15637127	3	2	15	1	0	0	0	0	1	0	0	0	12892	1029	36	4	301	4	PTPRO	12	15637127	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	4453564	15637127	118214768	65	770										
SLCO1C1	0	genome.wustl.edu	37	chr12	20890110	20890110	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tcaagatgcaaatgttcagaGacaaaatgggaacccatgtg	10	7	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	20890110	20890110	G	C	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.1452	p.E484D	0.972	pfam_OA_transporter,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	197	0	0	291	122	29.54	-	-	-	C	20890110	G	C	20890110	3	2	15	1	0	0	0	0	1	0	0	0	14814	933	33	2	1490	2	SLCO1C1	12	20890110	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	5252983	20890110	112961785	66	771										
PYROXD1	0	genome.wustl.edu	37	chr12	21621644	21621644	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	atctttcatcatatggagaaGatctgctagatccaaatatt	6	7	4	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	21621644	21621644	G	C	SNP	PYROXD1	ENST00000240651	human	ensembl	69_37n	1	known	missense	c.1459	p.D487H	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	PYROXD1	HGNC	ENSG00000121350	107	0	0	114	22	16.18	-	-	-	C	21621644	G	C	21621644	3	2	15	1	0	0	0	0	1	0	0	0	12949	942	33	2	1505	2	PYROXD1	12	21621644	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	731534	21621644	112230251	67	772										
BIN2	0	genome.wustl.edu	37	chr12	51696916	51696916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	caggtccttgtacagcttgtGgccttctgcctgaaagagaa	11	10	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	51696916	51696916	G	A	SNP	BIN2	ENST00000267012	human	ensembl	69_37n	-1	known	missense	c.172	p.H58Y	0.991	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934	117	0	0	127	19	13.01	-	-	-	A	51696916	G	A	51696916	3	1	15	1	0	0	0	0	1	0	0	0	1438	1348	47	4	1569	4	BIN2	12	51696916	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	30075272	51696916	82154979	68	773										
RBM19	0	genome.wustl.edu	37	chr12	114296661	114296661	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gtgtgtgcctgtcccagtcaTcttctttggcaggcggaccg	13	12	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	12	114296661	114296661	T	C	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.2599	p.M867V	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	104	0	0	141	24	14.55	-	-	-	C	114296661	T	C	114296661	3	2	15	1	0	0	0	0	1	0	0	0	13204	1435	50	5	295	5	RBM19	12	114296661	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	62599745	114296661	19555234	69	774										
N4BP2L2	0	genome.wustl.edu	37	chr13	33018233	33018233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttctgtttggttttgctgagCctatgcccagttttcttcaa	8	9	3	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	13	33018233	33018233	C	T	SNP	N4BP2L2	ENST00000399396	human	ensembl	69_37n	-1	known	silent	c.441	p.R147	0.000	NULL	NULL	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	40	0	0	37	29	43.94	-	-	-	T	33018233	C	T	33018233	2	4	15	1	0	0	0	0	0	0	0	1	10184	738	26	4		4	N4BP2L2	13	33018233	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		33018233	82151645	70	775										
MAB21L1	0	genome.wustl.edu	37	chr13	36050009	36050009	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccgggcagtgagccatcgtcCacgaagttgaacacccccat	10	15	0	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	13	36050009	36050009	C	T	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	silent	c.267	p.V89	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	72	0	0	72	16	18.18	-	-	-	T	36050009	C	T	36050009	2	4	15	1	0	0	0	0	0	0	0	1	9208	581	21	4		4	MAB21L1	13	36050009	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	3031776	36050009	79119869	71	776										
OR4L1	0	genome.wustl.edu	37	chr14	20529103	20529103	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	atgcaagaggccataagaaaAttacggttccaatatgttag	9	6	0	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	14	20529103	20529103	A	G	SNP	OR4L1	ENST00000315683	human	ensembl	69_37n	1	known	silent	c.900	p.K300	0.991	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4L1	HGNC	ENSG00000176246	72	0	0	45	34	43.04	-	-	-	G	20529103	A	G	20529103	2	3	15	1	0	0	0	0	0	0	0	1	11147	98	4	5		5	OR4L1	14	20529103	Silent	SNP	A	TCGA-A2-A04P-01A-31D-A128-09		20529103	86820437	72	777										
ABHD4	0	genome.wustl.edu	37	chr14	23078768	23078768	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	acctggatagataccagtacGggaaaaaaggtgaagatgca	12	6	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	14	23078768	23078768	G	A	SNP	ABHD4	ENST00000428304	human	ensembl	69_37n	1	known	silent	c.891	p.T297	0.047	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD4	HGNC	ENSG00000100439	132	0	0	126	57	30.98	-	-	-	A	23078768	G	A	23078768	2	1	15	1	0	0	0	0	0	0	0	1	84	1103	39	1		1	ABHD4	14	23078768	Silent	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	2549665	23078768	84270772	73	778										
MTHFD1	0	genome.wustl.edu	37	chr14	64906860	64906860	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	acaggcccagtttgatatctCtgtggccagtgaaattatgg	11	8	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	14	64906860	64906860	C	G	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.1859	p.S620C	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	104	0	0	40	79	66.39	-	-	-	G	64906860	C	G	64906860	3	3	15	1	0	0	0	0	1	0	0	0	9999	913	32	2	1761	2	MTHFD1	14	64906860	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	41828092	64906860	42442680	74	779										
SPTBN5	0	genome.wustl.edu	37	chr15	42185136	42185136	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tcggctgctgttctccaggaAgtgcacacgcaggcggcccc	13	15	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	15	42185136	42185136	A	C	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	missense	c.340	p.F114V	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	12	0	0	3	5	62.5	-	-	-	C	42185136	A	C	42185136	3	2	15	1	0	0	0	0	1	0	0	0	15213	72	3	5	10948	5	SPTBN5	15	42185136	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09		42185136	60346256	75	780										
TTBK2	0	genome.wustl.edu	37	chr15	43045173	43045173	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctattatgatcaggaagttcTtttggtcccaggtcttgaga	10	7	3	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	15	43045173	43045173	T	C	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	silent	c.2271	p.K757	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	206	0	0	203	83	29.02	-	-	-	C	43045173	T	C	43045173	2	2	15	1	0	0	0	0	0	0	0	1	16774	1606	56	5		5	TTBK2	15	43045173	Silent	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	860037	43045173	59486219	76	781										
DPP8	0	genome.wustl.edu	37	chr15	65799695	65799695	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctgttctcaccagacatggcTataggagaaagcaatcattt	8	9	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	15	65799695	65799695	T	A	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	splice_site	c.308-2	e3-2	0.996	-	-	-	no_errors	DPP8	HGNC	ENSG00000074603	117	0	0	61	85	58.22	-	-	-	A	65799695	T	A	65799695	5	1	15	1	0	0	0	0	0	0	1	0	4767	1536	53	5	2462	5	DPP8	15	65799695	Splice_Site	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	22754522	65799695	36731697	77	782										
ITGA11	0	genome.wustl.edu	37	chr15	68599782	68599782	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttcatggatttgtacttgagCtgtgcaatcagagggctcgt	12	7	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	15	68599782	68599782	C	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	splice_site	c.3286-1	e28-1	1.000	-	-	-	no_errors	ITGA11	HGNC	ENSG00000137809	88	0	0	63	16	20.25	-	-	-	A	68599782	C	A	68599782	5	1	15	1	0	0	0	0	0	0	1	0	7928	811	28	4	293	4	ITGA11	15	68599782	Splice_Site	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	2800087	68599782	33931610	78	783										
SALL1	0	genome.wustl.edu	37	chr16	51173426	51173426	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	catgtcaccacccactgaggAtgaatcattggtcaggacat	9	11	3	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	16	51173426	51173426	A	G	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.2707	p.S903P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	130	0	0	82	49	37.4	-	-	-	G	51173426	A	G	51173426	3	3	15	1	0	0	0	0	1	0	0	0	13896	333	12	5	1275	5	SALL1	16	51173426	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09		51173426	39181327	79	784										
VAC14	0	genome.wustl.edu	37	chr16	70796918	70796918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gaggtgaagggtcactggggCtctttcagtgctgtgggtaa	17	6	3	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	16	70796918	70796918	C	T	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.1171	p.A391T	0.853	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	98	0	0	79	45	36	-	-	-	T	70796918	C	T	70796918	3	4	15	1	0	0	0	0	1	0	0	0	17208	797	28	4	1213	4	VAC14	16	70796918	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	19623492	70796918	19557835	80	785										
TP53	0	genome.wustl.edu	37	chr17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-													0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gcaagaagcccagacggaaaCcgtagctgccctggtaggtt							TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	17	7579364	7579364	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323	p.G108fs	0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	169	0	0	19	24	55.81	-	-	-	-	7579364	C	-	7579364	7	5	15	1	0	1	0	1	0	0	0	0	16477	507	18	0	979	0	TP53	17	7579364	Frame_Shift_Del	DEL	C	TCGA-A2-A04P-01A-31D-A128-09		7579364	73615846	81	786										
MYO18A	0	genome.wustl.edu	37	chr17	27448654	27448654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cagcaggctagcgccatagcGctggcgcaaggtgtgcagga	16	11	0	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	17	27448654	27448654	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.1282	p.R428C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	25	0	0	9	11	55	-	-	-	A	27448654	G	A	27448654	3	1	15	1	0	0	0	0	1	0	0	0	10137	1087	38	1	5034	1	MYO18A	17	27448654	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	19869290	27448654	53746556	82	787										
DHX58	0	genome.wustl.edu	37	chr17	40259747	40259747	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ggacggtgtcatggatgagcAgcgcgtcattgtagcgcctc	15	10	2	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	17	40259747	40259747	A	T	SNP	DHX58	ENST00000251642	human	ensembl	69_37n	-1	known	missense	c.872	p.L291Q	1.000	NULL	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	19	0	0	22	17	42.5	-	-	-	T	40259747	A	T	40259747	3	4	15	1	0	0	0	0	1	0	0	0	4550	188	7	5	1192	5	DHX58	17	40259747	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	12811093	40259747	40935463	83	788										
RPTOR	0	genome.wustl.edu	37	chr17	78867561	78867561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	cagcaccagcagcagcgccaGcagcaccctgggcagccccg	12	19	0	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	17	78867561	78867561	G	C	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.2297	p.S766T	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	134	0	0	68	41	37.61	-	-	-	C	78867561	G	C	78867561	3	2	15	1	0	0	0	0	1	0	0	0	13751	971	34	4	2375	4	RPTOR	17	78867561	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	38607814	78867561	2327649	84	789										
EMILIN2	0	genome.wustl.edu	37	chr18	2890828	2890828	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tcagcagccagcaccccaagCctgacaccactgttagtgga	9	15	1	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	18	2890828	2890828	C	A	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.703	p.P235T	0.999	NULL	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	40	0	0	16	49	75.38	-	-	-	A	2890828	C	A	2890828	3	1	15	1	0	0	0	0	1	0	0	0	5131	739	26	4	717	4	EMILIN2	18	2890828	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		2890828	75186420	85	790										
GRIN3B	0	genome.wustl.edu	37	chr19	1005266	1005266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	tgcggccctgcacctcaccgCgctcttcctcaccgtgtacg	9	19	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	19	1005266	1005266	C	T	SNP	GRIN3B	ENST00000234389	human	ensembl	69_37n	1	known	missense	c.1766	p.A589V	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032	13	0	0	7	12	63.16	-	-	-	T	1005266	C	T	1005266	3	4	15	1	0	0	0	0	1	0	0	0	6835	768	27	1	1776	1	GRIN3B	19	1005266	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		1005266	58123717	86	791										
PGLS	0	genome.wustl.edu	37	chr19	17628661	17628661	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	caaggcagctgttctgaaggTaacagctgagggttctagtc	13	8	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	19	17628661	17628661	T	A	SNP	PGLS	ENST00000252603	human	ensembl	69_37n	1	known	splice_site	c.639+2	e4+2	1.000	-	-	-	no_errors	PGLS	HGNC	ENSG00000130313	23	0	0	108	55	32.74	-	-	-	A	17628661	T	A	17628661	5	1	15	1	0	0	0	0	0	0	1	0	11866	1652	57	5	655	5	PGLS	19	17628661	Splice_Site	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	16623395	17628661	41500322	87	792										
LIPE	0	genome.wustl.edu	37	chr19	42911525	42911525	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccgccgtggaagtgcactatCagggaccgcgagcggggtgc	17	12	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	19	42911525	42911525	C	G	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	silent	c.1938	p.L646	0.574	pfam_Steryl_acetyl_hydrolase	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	71	0	0	23	30	56.6	-	-	-	G	42911525	C	G	42911525	2	3	15	1	0	0	0	0	0	0	0	1	8877	813	29	2		2	LIPE	19	42911525	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	25282864	42911525	16217458	88	793										
C20orf132	0	genome.wustl.edu	37	chr20	35737007	35737007	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	actgttatcacttaccgtccTctatccagtcagtacccatc	4	15	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	20	35737007	35737007	T	C	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.2975	p.E992G	0.988	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	75	0	0	38	75	66.37	-	-	-	C	35737007	T	C	35737007	3	2	15	1	0	0	0	0	1	0	0	0	2106	1551	54	5	161	5	C20orf132	20	35737007	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09		35737007	27288513	89	794										
CXADR	0	genome.wustl.edu	37	chr21	18933138	18933138	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ctgttgcgtctaaacgttgtCcctcgtaagttatcttcttt	7	10	3	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	21	18933138	18933138	C	G	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	silent	c.690	p.V230	0.989	smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CXADR	HGNC	ENSG00000154639	418	0	0	776	457	37.03	-	-	-	G	18933138	C	G	18933138	2	3	15	1	0	0	0	0	0	0	0	1	4107	842	30	2		2	CXADR	21	18933138	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		18933138	29196757	90	795										
IL10RB	0	genome.wustl.edu	37	chr21	34652083	34652083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ttggaccccctggaatgcaaGtagaagtacttgctgattct	10	9	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	21	34652083	34652083	G	A	SNP	IL10RB	ENST00000290200	human	ensembl	69_37n	1	known	missense	c.358	p.V120I	0.127	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646	181	0	0	191	61	24.21	-	-	-	A	34652083	G	A	34652083	3	1	15	1	0	0	0	0	1	0	0	0	7675	1029	36	4	372	4	IL10RB	21	34652083	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	15718945	34652083	13477812	91	796										
KCNJ4	0	genome.wustl.edu	37	chr22	38823629	38823629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gcgccatcttggccatgatgGtgccaatcatgaaggagtcg	13	10	2	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	22	38823629	38823629	G	T	SNP	KCNJ4	ENST00000303592	human	ensembl	69_37n	-1	known	missense	c.509	p.T170N	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135	20	0	0	15	11	42.31	-	-	-	T	38823629	G	T	38823629	3	4	15	1	0	0	0	0	1	0	0	0	8107	1261	44	4	832	4	KCNJ4	22	38823629	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09		38823629	12480937	92	797										
ATF4	0	genome.wustl.edu	37	chr22	39917510	39917510	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ggggacttgatgtcccccttCgaccagtcgggtttgggggc	16	11	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	22	39917510	39917510	C	G	SNP	ATF4	ENST00000337304	human	ensembl	69_37n	1	known	missense	c.60	p.F20L	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	42	0	0	71	10	12.35	-	-	-	G	39917510	C	G	39917510	3	3	15	1	0	0	0	0	1	0	0	0	1086	883	31	3	62	3	ATF4	22	39917510	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	1093881	39917510	11387056	93	798										
TNRC6B	0	genome.wustl.edu	37	chr22	40711386	40711386	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gaaaaaccatatttcctccaGgaacactacaccgctgcccc	5	16	0	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	22	40711386	40711386	G	T	SNP	TNRC6B	ENST00000446273	human	ensembl	69_37n	1	putative	nonsense	c.3835	p.G1279*	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNRC6B	HGNC	ENSG00000100354	101	0	0	152	102	40.16	-	-	-	T	40711386	G	T	40711386	4	4	15	1	0	0	0	0	0	1	0	0	16436	1000	35	4	4977	4	TNRC6B	22	40711386	Nonsense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	793876	40711386	10593180	94	799										
PACSIN2	0	genome.wustl.edu	37	chr22	43267475	43267475	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccatcttggtcagctcatccCctgcaagacaaagagggagc	10	13	3	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	22	43267475	43267475	C	G	SNP	PACSIN2	ENST00000263246	human	ensembl	69_37n	-1	known	missense	c.1349	p.G450A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266	64	0	0	135	109	44.67	-	-	-	G	43267475	C	G	43267475	3	3	15	1	0	0	0	0	1	0	0	0	11448	637	22	4	115	4	PACSIN2	22	43267475	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	2556089	43267475	8037091	95	800										
ASB9	0	genome.wustl.edu	37	chrX	15267033	15267033	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	catgaagtggggaatcctgaCctttcccttggttcacgtcc	10	12	1	2			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	15267033	15267033	C	T	SNP	ASB9	ENST00000380488	human	ensembl	69_37n	-1	known	missense	c.593	p.G198D	0.023	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB9	HGNC	ENSG00000102048	68	0	0	74	11	12.79	-	-	-	T	15267033	C	T	15267033	3	4	15	1	0	0	0	0	1	0	0	0	1034	507	18	4	328	4	ASB9	23	15267033	Missense_Mutation	SNP	C	TCGA-A2-A04P-01A-31D-A128-09		15267033	140003527	96	801										
PHEX	0	genome.wustl.edu	37	chrX	22237179	22237179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gagttatggtgctataggagTaattgtcggacatgaattta	12	3	0	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	22237179	22237179	T	C	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	missense	c.1727	p.V576A	1.000	pfam_Peptidase_M13_C,prints_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	292	0	0	417	125	23.06	-	-	-	C	22237179	T	C	22237179	3	2	15	1	0	0	0	0	1	0	0	0	11893	1638	57	5	1793	5	PHEX	23	22237179	Missense_Mutation	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	6970146	22237179	133033381	97	802										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29973934	29973934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	agtatatccagtgtgatatgGtgacagaaaagcaagggaca	12	5	0	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	29973934	29973934	G	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.2088	p.W696C	1.000	NULL	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	49	0	0	26	24	48	-	-	-	T	29973934	G	T	29973934	3	4	15	1	0	0	0	0	1	0	0	0	7715	1270	44	4	2126	4	IL1RAPL1	23	29973934	Missense_Mutation	SNP	G	TCGA-A2-A04P-01A-31D-A128-09	7736755	29973934	125296626	98	803										
AKAP4	0	genome.wustl.edu	37	chrX	49957298	49957298	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	attgcccgttcgcttgcttcAtcccactggtacagtcaagt	8	13	2	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	49957298	49957298	A	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.2066	p.M689K	0.997	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	164	0	0	205	47	18.65	-	-	-	T	49957298	A	T	49957298	3	4	15	1	0	0	0	0	1	0	0	0	453	217	8	5	506	5	AKAP4	23	49957298	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	19983364	49957298	105313262	99	804										
SHROOM4	0	genome.wustl.edu	37	chrX	50381257	50381257	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gctgcttcagggcatccctcCagcagcttggccacatgcca	10	16	1	0			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	50381257	50381257	C	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	1.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	93	0	0	85	14	14.14	-	-	-	A	50381257	C	A	50381257	2	1	15	1	0	0	0	0	0	0	0	1	14385	581	21	4		4	SHROOM4	23	50381257	Silent	SNP	C	TCGA-A2-A04P-01A-31D-A128-09	423959	50381257	104889303	100	805										
SERPINA7	0	genome.wustl.edu	37	chrX	105278253	105278253	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	agtttcagaccattgtcctcTgtgagtccagaaaaatcagc	8	10	3	3			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	105278253	105278253	T	G	SNP	SERPINA7	ENST00000327674	human	ensembl	69_37n	-1	known	silent	c.1017	p.T339	0.101	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA7	HGNC	ENSG00000123561	146	0	0	96	83	46.37	-	-	-	G	105278253	T	G	105278253	2	3	15	1	0	0	0	0	0	0	0	1	14182	1567	55	5		5	SERPINA7	23	105278253	Silent	SNP	T	TCGA-A2-A04P-01A-31D-A128-09	54896996	105278253	49992307	101	806										
PAK3	0	genome.wustl.edu	37	chrX	110459702	110459702	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	gagctccagaatcctgagagActgtcagctgtattccgtga	11	10	1	4			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	110459702	110459702	A	C	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	missense	c.1569	p.R523S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	304	0	0	191	43	18.38	-	-	-	C	110459702	A	C	110459702	3	2	15	1	0	0	0	0	1	0	0	0	11475	272	10	5	1627	5	PAK3	23	110459702	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	5181449	110459702	44810858	102	807										
MAGEA1	0	genome.wustl.edu	37	chrX	152482175	152482175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	9	0.770595178800023	1.11778846153846	1.98717948717949	0.248397435897436	0.00547749464158134	0.0939822764818693	0	ccttgatcacatactcaaggActttcacatagctggtttca	6	11	4	1			TCGA-A2-A04P-01A-31D-A128-09	TCGA-A2-A04P-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a85cf239-ff51-46e7-9b88-4c2cb49c66b9	aaef2ada-b81d-4e89-8add-a571603d67bb	X	152482175	152482175	A	G	SNP	MAGEA1	ENST00000356661	human	ensembl	69_37n	-1	known	missense	c.836	p.V279A	0.003	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA1	HGNC	ENSG00000198681	91	0	0	131	83	38.6	-	-	-	G	152482175	A	G	152482175	3	3	15	1	0	0	0	0	1	0	0	0	9230	275	10	5	97	5	MAGEA1	23	152482175	Missense_Mutation	SNP	A	TCGA-A2-A04P-01A-31D-A128-09	42022473	152482175	2788385	103	808										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17964411	17964411	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tacctcggccccccacgcctCttccaggagctgcaggacct	9	19	1	0			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	1	17964411	17964411	C	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	silent	c.1956	p.L652	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	31	0	0	21	4	16	-	-	-	A	17964411	C	A	17964411	2	1	16	1	0	0	0	0	0	0	0	1	897	900	32	2		2	ARHGEF10L	1	17964411	Silent	SNP	C	TCGA-A2-A04Q-01A-21W-A050-09		17964411	231286210	1	809										
CLSTN2	0	genome.wustl.edu	37	chr3	140251267	140251267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaccatacctggtgaccaaCgactggcccattcatccatc	7	15	1	1			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	3	140251267	140251267	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	silent	c.1446	p.N482	0.984	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	112	0	0	124	24	16.22	-	-	-	T	140251267	C	T	140251267	2	4	16	1	0	0	0	0	0	0	0	1	3592	535	19	1		1	CLSTN2	3	140251267	Silent	SNP	C	TCGA-A2-A04Q-01A-21W-A050-09		140251267	57771163	2	810										
KCNQ5	0	genome.wustl.edu	37	chr6	73843189	73843189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgcgcatggctagccccagGggccagagtattaagagccg	15	11	0	2			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	6	73843189	73843189	G	A	SNP	KCNQ5	ENST00000427928	human	ensembl	69_37n	1	putative	missense	c.67	p.G23R	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNQ5	HGNC	ENSG00000185760	254	0	0	124	14	10.14	-	-	-	A	73843189	G	A	73843189	3	1	16	1	0	0	0	0	1	0	0	0	8140	1223	43	4	1392	4	KCNQ5	6	73843189	Missense_Mutation	SNP	G	TCGA-A2-A04Q-01A-21W-A050-09		73843189	97271878	3	811										
HECW1	0	genome.wustl.edu	37	chr7	43590145	43590145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgaagtggcgggtggagcgCggcgtggtacagcagaccga	20	8	0	2			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	43590145	43590145	C	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.4350	p.R1450	0.091	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	155	0	0	138	19	12.03	-	-	-	T	43590145	C	T	43590145	2	4	16	1	0	0	0	0	0	0	0	1	7093	755	27	1		1	HECW1	7	43590145	Silent	SNP	C	TCGA-A2-A04Q-01A-21W-A050-09		43590145	115548518	4	812										
PCLO	0	genome.wustl.edu	37	chr7	82791690	82791691	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	NA	0	1	1	0	aaggcgactccgcagcggccINSggggggacgcttcccttggg							TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	82791690	82791691	-	G	INS	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_ins	c.219_218	p.A74fs	0.999:0.998	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	27	0	0	23	3	11.54	-	-	-	G	82791691	-	G	82791690	7	5	16	1	0	1	1	0	0	0	0	0	11656	639	23	0	15326	0	PCLO	7	82791690	Frame_Shift_Ins	INS	-	TCGA-A2-A04Q-01A-21W-A050-09	39201545	82791690	76346973	5	813										
SVEP1	0	genome.wustl.edu	37	chr9	113191597	113191597	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	attctttatcaccggccagaGtatatcctttattacaccta	4	11	2	1			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	9	113191597	113191597	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.5633	p.T1878N	0.002	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	44	0	0	83	14	14.43	-	-	-	T	113191597	G	T	113191597	3	4	16	1	0	0	0	0	1	0	0	0	15511	1029	36	4	5138	4	SVEP1	9	113191597	Missense_Mutation	SNP	G	TCGA-A2-A04Q-01A-21W-A050-09		113191597	28021834	6	814										
ARID2	0	genome.wustl.edu	37	chr12	46230605	46230605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taacgatattgaaggacagcGggtacttcagattgcagtga	12	6	1	3			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	12	46230605	46230605	G	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.854	p.R285Q	1.000	superfamily_ARM-type_fold	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	136	1	0.73	269	39	12.66	-	-	-	A	46230605	G	A	46230605	3	1	16	1	0	0	0	0	1	0	0	0	917	1116	39	1	884	1	ARID2	12	46230605	Missense_Mutation	SNP	G	TCGA-A2-A04Q-01A-21W-A050-09		46230605	87621290	7	815										
TEKT1	0	genome.wustl.edu	37	chr17	6733605	6733605	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caggcgttctgatcgggaccTttgagcgtctgctctgtggt	14	10	3	2			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	6733605	6733605	T	G	SNP	TEKT1	ENST00000338694	human	ensembl	69_37n	-1	known	silent	c.91	p.R31	0.728	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858	59	0	0	96	16	14.29	-	-	-	G	6733605	T	G	6733605	2	3	16	1	0	0	0	0	0	0	0	1	15847	1608	56	5		5	TEKT1	17	6733605	Silent	SNP	T	TCGA-A2-A04Q-01A-21W-A050-09		6733605	74461605	8	816										
NF1	0	genome.wustl.edu	37	chr17	29548939	29548939	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctcctgtagaaacattttgGgagattaggtatatgtactt	10	5	0	2			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	29548939	29548939	G	A	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.1713	p.W571*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	46	0	0	259	37	12.5	-	-	-	A	29548939	G	A	29548939	4	1	16	1	0	0	0	0	0	1	0	0	10428	1241	43	4	1771	4	NF1	17	29548939	Nonsense_Mutation	SNP	G	TCGA-A2-A04Q-01A-21W-A050-09	22815334	29548939	51646271	9	817										
GPI	0	genome.wustl.edu	37	chr19	34856187	34856188	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	NA	0	1	1	0	cgccatggccgctctcacccINSgggacccccagttccagaag							TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	34856187	34856188	-	G	INS	GPI	ENST00000415930	human	ensembl	69_37n	1	known	frame_shift_ins	c.133_134	p.D46fs	0.460:0.410	NULL	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220	33	0	0	9	2	18.18	-	-	-	G	34856188	-	G	34856187	7	5	16	1	0	1	1	0	0	0	0	0	6661	643	23	0	139	0	GPI	19	34856187	Frame_Shift_Ins	INS	-	TCGA-A2-A04Q-01A-21W-A050-09		34856187	24272796	10	818										
ARHGEF1	0	genome.wustl.edu	37	chr19	42396193	42396193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagcttcctggagaagacagCggtgagagaccttcaagctg	13	10	1	4			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	42396193	42396193	C	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	1	known	missense	c.368	p.A123V	1.000	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	72	0	0	70	11	13.41	-	-	-	T	42396193	C	T	42396193	3	4	16	1	0	0	0	0	1	0	0	0	895	782	27	1	386	1	ARHGEF1	19	42396193	Missense_Mutation	SNP	C	TCGA-A2-A04Q-01A-21W-A050-09	7540006	42396193	16732790	11	819										
CSMD2	0	genome.wustl.edu	37	chr1	34068091	34068091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gagctggagtacgggctaggGaaccccggggagtacacagt	17	9	0	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	1	34068091	34068091	G	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.6588	p.F2196L	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	43	0	0	7	14	66.67	-	-	-	T	34068091	G	T	34068091	3	4	17	1	0	0	0	0	1	0	0	0	3977	1165	41	2	3973	2	CSMD2	1	34068091	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		34068091	215182530	1	820										
ECM1	0	genome.wustl.edu	37	chr1	150484230	150484230	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	accccctacaaagggagctgCtggcactgatccagctggag	12	13	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	1	150484230	150484230	C	A	SNP	ECM1	ENST00000369049	human	ensembl	69_37n	1	known	missense	c.1087	p.L363M	0.791	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369	19	0	0	27	9	25	-	-	-	A	150484230	C	A	150484230	3	1	17	1	0	0	0	0	1	0	0	0	4932	796	28	4	1032	4	ECM1	1	150484230	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	116416139	150484230	98766391	2	821										
LCE2A	0	genome.wustl.edu	37	chr1	152671581	152671581	+	Frame_Shift_Del	DEL	C	C	-													0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tctgggggtggcggctgctgCctgagccaccacaggccccg							TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	1	152671581	152671581	C	-	DEL	LCE2A	ENST00000368779	human	ensembl	69_37n	1	known	frame_shift_del	c.204	p.L69fs	0.182	NULL	NULL	-	no_errors	LCE2A	HGNC	ENSG00000187173	72	0	0	39	50	56.18	-	-	-	-	152671581	C	-	152671581	7	5	17	1	0	1	0	1	0	0	0	0	8719	747	26	0	206	0	LCE2A	1	152671581	Frame_Shift_Del	DEL	C	TCGA-A2-A04R-01A-41D-A117-09	2187351	152671581	96579040	3	822										
ZNF238	0	genome.wustl.edu	37	chr1	244218516	244218516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ccgcacgcctgcaagtggtgCgagcgcaggttcacgcagtc	14	14	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	1	244218516	244218516	C	T	SNP	ZNF238	ENST00000358704	human	ensembl	69_37n	1	known	silent	c.1440	p.C480	0.986	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF238	HGNC	ENSG00000179456	8	0	0	7	13	65	-	-	-	T	244218516	C	T	244218516	2	4	17	1	0	0	0	0	0	0	0	1	17886	776	27	1		1	ZNF238	1	244218516	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	91546935	244218516	5032105	4	823										
MAL	0	genome.wustl.edu	37	chr2	95691433	95691433	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gctcccctgctcttaacccgCgcgcgggggcgcccaggcca	13	19	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	95691433	95691433	C	T	SNP	MAL	ENST00000489399	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.916	-	-	-	no_errors	MAL	HGNC	ENSG00000172005	26	0	0	2	6	75	-	-	-	T	95691433	C	T	95691433	1	4	17	0	1	0	0	0	0	0	0	0	9270	783	27	1		1	MAL	2	95691433	RNA	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		95691433	147507940	5	824										
GCC2	0	genome.wustl.edu	37	chr2	109100752	109100752	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aaaaacagaaacaagaaaccCtacaagaagaaataagtgag	7	6	0	5			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	109100752	109100752	C	G	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.3598	p.L1200V	0.891	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	102	0	0	77	46	37.4	-	-	-	G	109100752	C	G	109100752	3	3	17	1	0	0	0	0	1	0	0	0	6336	680	24	4	3648	4	GCC2	2	109100752	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	13409319	109100752	134098621	6	825										
LRP2	0	genome.wustl.edu	37	chr2	170177381	170177381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ccacttccacagcgaaaatgCgcactgtcacattctgcaat	6	14	2	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	170177381	170177381	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.93	p.A31	0.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	122	0	0	68	52	43.33	-	-	-	T	170177381	C	T	170177381	2	4	17	1	0	0	0	0	0	0	0	1	9022	755	27	1		1	LRP2	2	170177381	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	61076629	170177381	73021992	7	826										
HNRNPA3	0	genome.wustl.edu	37	chr2	178080348	178080348	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aaactacagatgatagtttaCgagaacattttgagaaatgg	9	4	0	4			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	178080348	178080348	C	T	SNP	HNRNPA3	ENST00000392524	human	ensembl	69_37n	1	known	nonsense	c.154	p.R52*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144	54	0	0	26	16	38.1	-	-	-	T	178080348	C	T	178080348	4	4	17	1	0	0	0	0	0	1	0	0	7311	528	19	1	160	1	HNRNPA3	2	178080348	Nonsense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	7902967	178080348	65119025	8	827										
TTN	0	genome.wustl.edu	37	chr2	179457975	179457975	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aatttcattttctgcagaaaCccggaattcatactgacatc	5	10	3	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	179457975	179457975	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.51256	p.V17086F	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	167	0	0	85	69	43.95	-	-	-	A	179457975	C	A	179457975	3	1	17	1	0	0	0	0	1	0	0	0	16832	507	18	4	49275	4	TTN	2	179457975	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1377627	179457975	63741398	9	828										
HECW2	0	genome.wustl.edu	37	chr2	197143359	197143359	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gggatcaatgaaagtggtggTgcgggagttgtggtccacaa	17	5	1	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	2	197143359	197143359	T	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.3028	p.T1010A	0.820	pfam_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	140	0	0	72	63	46.67	-	-	-	C	197143359	T	C	197143359	3	2	17	1	0	0	0	0	1	0	0	0	7094	1696	59	5	1750	5	HECW2	2	197143359	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	17685384	197143359	46056014	10	829										
SCN11A	0	genome.wustl.edu	37	chr3	38991797	38991797	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gcagccagagagtcggaagtGaaggggcggaaattccgctc	16	9	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	3	38991797	38991797	G	T	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.57	p.F19L	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	52	0	0	31	24	43.64	-	-	-	T	38991797	G	T	38991797	3	4	17	1	0	0	0	0	1	0	0	0	14001	1281	45	2	5422	2	SCN11A	3	38991797	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		38991797	159030633	11	830										
CACNA1D	0	genome.wustl.edu	37	chr3	53769505	53769505	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cctggccgcagaggaccccaTccgcagccactccttccgga	10	19	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	3	53769505	53769505	T	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2786	p.I929N	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	43	0	0	14	22	61.11	-	-	-	A	53769505	T	A	53769505	3	1	17	1	0	0	0	0	1	0	0	0	2566	1435	50	5	2976	5	CACNA1D	3	53769505	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	14777708	53769505	144252925	12	831										
CACNA2D3	0	genome.wustl.edu	37	chr3	54676226	54676226	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	actgatggggcggtggacacCtatgatacaatctttgcaaa	11	8	1	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	3	54676226	54676226	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	silent	c.1125	p.T375	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	86	0	0	49	55	52.88	-	-	-	T	54676226	C	T	54676226	2	4	17	1	0	0	0	0	0	0	0	1	2575	668	24	4		4	CACNA2D3	3	54676226	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	906721	54676226	143346204	13	832										
DNAH12	0	genome.wustl.edu	37	chr3	57456362	57456362	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gttgtcttacatctgtcacaTactgaaagtaaataagtttt	6	6	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	3	57456362	57456362	T	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.1913	p.Y638F	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	124	0	0	54	38	41.3	-	-	-	A	57456362	T	A	57456362	3	1	17	1	0	0	0	0	1	0	0	0	4636	1420	49	5	7541	5	DNAH12	3	57456362	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	2780136	57456362	140566068	14	833										
PTTG2	0	genome.wustl.edu	37	chr4	37962151	37962151	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ctggagtctagaccttcaatCaaagcattagatgggatatc	9	8	3	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	4	37962151	37962151	C	T	SNP	PTTG2	ENST00000504686	human	ensembl	69_37n	1	known	silent	c.96	p.I32	0.000	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG2	HGNC	ENSG00000250254	76	0	0	10	48	82.76	-	-	-	T	37962151	C	T	37962151	2	4	17	1	0	0	0	0	0	0	0	1	12904	816	29	2		2	PTTG2	4	37962151	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		37962151	153192125	15	834										
USP46	0	genome.wustl.edu	37	chr4	53468079	53468079	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	atgcggtccaggttcactgcAtcactggaggtgttgaagag	14	8	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	4	53468079	53468079	A	G	SNP	USP46	ENST00000441222	human	ensembl	69_37n	-1	known	silent	c.864	p.D288	0.539	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP46	HGNC	ENSG00000109189	94	0	0	43	35	44.87	-	-	-	G	53468079	A	G	53468079	2	3	17	1	0	0	0	0	0	0	0	1	17174	214	8	5		5	USP46	4	53468079	Silent	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	15505928	53468079	137686197	16	835										
POLR2B	0	genome.wustl.edu	37	chr4	57888327	57888327	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgtgtttttaggtctgttttCtatcgctcatacaaagaaca	7	7	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	4	57888327	57888327	C	T	SNP	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	silent	c.2430	p.F810	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	194	0	0	117	83	41.5	-	-	-	T	57888327	C	T	57888327	2	4	17	1	0	0	0	0	0	0	0	1	12289	912	32	2		2	POLR2B	4	57888327	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	4420248	57888327	133265949	17	836										
ODZ3	0	genome.wustl.edu	37	chr4	183594306	183594306	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cagtttcttaaattcaatatCtctcttcagaaggatgcatt	5	8	5	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	4	183594306	183594306	C	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	silent	c.1260	p.I420	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	137	0	0	64	68	51.52	-	-	-	A	183594306	C	A	183594306	2	1	17	1	0	0	0	0	0	0	0	1	10909	903	32	2		2	ODZ3	4	183594306	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	125705979	183594306	7559970	18	837										
RAPGEF6	0	genome.wustl.edu	37	chr5	130785738	130785738	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cagactccgccacctcttctTcctgtaagcaagagccacaa	6	16	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	5	130785738	130785738	T	G	SNP	RAPGEF6	ENST00000307984	human	ensembl	69_37n	-1	known	missense	c.3217	p.K1073Q	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	109	0	0	52	40	43.48	-	-	-	G	130785738	T	G	130785738	3	3	17	1	0	0	0	0	1	0	0	0	13131	1797	62	5	2094	5	RAPGEF6	5	130785738	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09		130785738	50129522	19	838										
SPRY4	0	genome.wustl.edu	37	chr5	141694299	141694299	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tggatgcgcacagcccttggTgaggcctggtcagccacggg	16	12	1	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	5	141694299	141694299	T	A	SNP	SPRY4	ENST00000344120	human	ensembl	69_37n	-1	known	silent	c.444	p.S148	0.002	NULL	pfam_Sprouty	-	no_errors	SPRY4	HGNC	ENSG00000187678	39	0	0	26	35	56.45	-	-	-	A	141694299	T	A	141694299	2	1	17	1	0	0	0	0	0	0	0	1	15199	1683	59	5		5	SPRY4	5	141694299	Silent	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	10908561	141694299	39220961	20	839										
FAM114A2	0	genome.wustl.edu	37	chr5	153374519	153374519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ttaatgggttaaggacatctGccatttctttgacctggaat	9	7	2	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	5	153374519	153374519	G	A	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.1343	p.A448V	1.000	NULL	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	165	0	0	84	59	41.26	-	-	-	A	153374519	G	A	153374519	3	1	17	1	0	0	0	0	1	0	0	0	5444	1319	46	4	182	4	FAM114A2	5	153374519	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	11680220	153374519	27540741	21	840										
DOK3	0	genome.wustl.edu	37	chr5	176931757	176931757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	acctcaccttgtcggagccgAacttgcgcaggaagtggtag	13	11	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	5	176931757	176931757	A	T	SNP	DOK3	ENST00000357198	human	ensembl	69_37n	-1	known	missense	c.800	p.F267Y	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	25	0	0	10	7	41.18	-	-	-	T	176931757	A	T	176931757	3	4	17	1	0	0	0	0	1	0	0	0	4733	246	9	5	1050	5	DOK3	5	176931757	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	23557238	176931757	3983503	22	841										
HIST1H2AL	0	genome.wustl.edu	37	chr6	27833360	27833360	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gccgcccgcgacaacaagaaGacccgcattatcccgcgcca	9	18	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	6	27833360	27833360	G	C	SNP	HIST1H2AL	ENST00000357320	human	ensembl	69_37n	1	known	missense	c.228	p.K76N	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374	91	0	0	62	41	39.81	-	-	-	C	27833360	G	C	27833360	3	2	17	1	0	0	0	0	1	0	0	0	7189	933	33	2	230	2	HIST1H2AL	6	27833360	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		27833360	143281707	23	842										
POLH	0	genome.wustl.edu	37	chr6	43578461	43578461	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tctggaatccagacagaatgGtgagttcttttctagctcat	9	8	4	3			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	6	43578461	43578461	G	T	SNP	POLH	ENST00000372236	human	ensembl	69_37n	1	known	splice_site	c.1244+1	e9+1	1.000	-	-	-	no_errors	POLH	HGNC	ENSG00000170734	32	0	0	25	11	30.56	-	-	-	T	43578461	G	T	43578461	5	4	17	1	0	0	0	0	0	0	1	0	12276	1275	44	4	1279	4	POLH	6	43578461	Splice_Site	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	15745101	43578461	127536606	24	843										
NOD1	0	genome.wustl.edu	37	chr7	30491883	30491883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cacagagcacaggctgcagaGgttggggttggcctccagct	15	11	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	7	30491883	30491883	G	T	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.1150	p.L384I	1.000	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	21	0	0	13	7	35	-	-	-	T	30491883	G	T	30491883	3	4	17	1	0	0	0	0	1	0	0	0	10588	1000	35	4	1747	4	NOD1	7	30491883	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		30491883	128646780	25	844										
GRM3	0	genome.wustl.edu	37	chr7	86415883	86415883	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tccgcaagtcctacgacagcGtgatccgagaactgttgcag	11	12	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	7	86415883	86415883	G	C	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.775	p.V259L	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	14	0	0	10	8	44.44	-	-	-	C	86415883	G	C	86415883	3	2	17	1	0	0	0	0	1	0	0	0	6849	1145	40	3	781	3	GRM3	7	86415883	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	55924000	86415883	72722780	26	845										
KCND2	0	genome.wustl.edu	37	chr7	119915612	119915612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gttttcccgccactctcaagGcctgcgcatcctggggtaca	10	15	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	7	119915612	119915612	G	T	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.926	p.G309V	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	97	0	0	39	45	52.94	-	-	-	T	119915612	G	T	119915612	3	4	17	1	0	0	0	0	1	0	0	0	8073	1203	42	4	928	4	KCND2	7	119915612	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	33499729	119915612	39223051	27	846										
NOS3	0	genome.wustl.edu	37	chr7	150698415	150698415	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ccagggggggctgccctgcaGactgggcctggatcgtgccc	17	14	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	7	150698415	150698415	G	A	SNP	NOS3	ENST00000297494	human	ensembl	69_37n	1	known	missense	c.1330	p.D444N	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	64	0	0	25	29	53.7	-	-	-	A	150698415	G	A	150698415	3	1	17	1	0	0	0	0	1	0	0	0	10616	942	33	2	1368	2	NOS3	7	150698415	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	30782803	150698415	8440248	28	847										
FAM167A	0	genome.wustl.edu	37	chr8	11301703	11301703	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cctgccccccacgctcccccTcctccaagctcgcctgtggc	7	24	0	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	8	11301703	11301703	T	A	SNP	FAM167A	ENST00000284486	human	ensembl	69_37n	-1	known	missense	c.218	p.E73V	0.011	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319	22	0	0	16	11	40.74	-	-	-	A	11301703	T	A	11301703	3	1	17	1	0	0	0	0	1	0	0	0	5523	1551	54	5	434	5	FAM167A	8	11301703	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09		11301703	135062319	29	848										
PLAT	0	genome.wustl.edu	37	chr8	42033530	42033530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gtcacggtcgcatgttgtcaCgaatccagtctaggtagttg	12	9	3	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	8	42033530	42033530	C	G	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.1670	p.R557P	0.001	superfamily_Pept_cys/ser_Trypsin-like,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	132	0	0	81	58	41.43	-	-	-	G	42033530	C	G	42033530	3	3	17	1	0	0	0	0	1	0	0	0	12095	536	19	3	22	3	PLAT	8	42033530	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	30731827	42033530	104330492	30	849										
ZFPM2	0	genome.wustl.edu	37	chr8	106813723	106813723	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ttttcttacacaaaaataaaGtctgagccctctagcccaag	5	11	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	8	106813723	106813723	G	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.1413	p.K471N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	78	0	0	48	83	63.36	-	-	-	T	106813723	G	T	106813723	3	4	17	1	0	0	0	0	1	0	0	0	17754	1020	36	4	1443	4	ZFPM2	8	106813723	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	64780193	106813723	39550299	31	850										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18817201	18817201	+	Missense_Mutation	SNP	G	G	C													0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	agcaccatcaaaacagtgcaGggagtgaatgtgacaatcaa							TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	9	18817201	18817201	G	C	SNP	ADAMTSL1	ENST00000380548	human	ensembl	69_37n	1	novel	missense	c.3900	p.Q1300H	0.004	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	93	0	0	44	29	39.73	-	-	-	C	18817201	G	C	18817201	3	2	17	1	0	0	0	0	1	0	0	0	274	991	35	4	3986	4	ADAMTSL1	9	18817201	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		18817201	122396230	32	851	4	2								
ADAMTSL1	0	genome.wustl.edu	37	chr9	18817202	18817202	+	Nonsense_Mutation	SNP	G	G	T													0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gcaccatcaaaacagtgcagGgagtgaatgtgacaatcaac							TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	9	18817202	18817202	G	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	69_37n	1	novel	nonsense	c.3901	p.G1301*	0.971	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	90	0	0	44	29	39.73	-	-	-	T	18817202	G	T	18817202	4	4	17	1	0	0	0	0	0	1	0	0	274	1233	43	4	3987	4	ADAMTSL1	9	18817202	Nonsense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	1	18817202	122396229	33	852	4	2								
NR6A1	0	genome.wustl.edu	37	chr9	127316626	127316626	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cccttccggttcatccccatCtggaggcatttgagcaggcg	11	14	2	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	9	127316626	127316626	C	G	SNP	NR6A1	ENST00000487099	human	ensembl	69_37n	-1	known	missense	c.366	p.Q122H	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	94	0	0	102	48	31.79	-	-	-	G	127316626	C	G	127316626	3	3	17	1	0	0	0	0	1	0	0	0	10710	912	32	2	1108	2	NR6A1	9	127316626	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	108499424	127316626	13896805	34	853										
FAM107B	0	genome.wustl.edu	37	chr10	14816305	14816305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ggaagcgtgaaacaccactgCttcacagtccgccccatcat	8	15	2	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	14816305	14816305	C	A	SNP	FAM107B	ENST00000181796	human	ensembl	69_37n	-1	known	missense	c.358	p.A120S	0.000	NULL	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809	44	0	0	29	29	50	-	-	-	A	14816305	C	A	14816305	3	1	17	1	0	0	0	0	1	0	0	0	5430	797	28	4	582	4	FAM107B	10	14816305	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		14816305	120718442	35	854										
MASTL	0	genome.wustl.edu	37	chr10	27454445	27454445	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tcaaaaggacactacgccttAttctagcaaattactaaaat	4	9	2	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	27454445	27454445	A	T	SNP	MASTL	ENST00000375940	human	ensembl	69_37n	1	known	missense	c.788	p.Y263F	0.204	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MASTL	HGNC	ENSG00000120539	92	0	0	38	38	50	-	-	-	T	27454445	A	T	27454445	3	4	17	1	0	0	0	0	1	0	0	0	9399	449	16	5	810	5	MASTL	10	27454445	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	12638140	27454445	108080302	36	855										
FUT11	0	genome.wustl.edu	37	chr10	75532267	75532267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gctgggcgcagtgggggtgaCgcgcagctctgggacgccgc	20	12	1	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	75532267	75532267	C	A	SNP	FUT11	ENST00000372841	human	ensembl	69_37n	1	known	missense	c.176	p.T59K	1.000	pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT11	HGNC	ENSG00000196968	18	0	0	11	7	38.89	-	-	-	A	75532267	C	A	75532267	3	1	17	1	0	0	0	0	1	0	0	0	6152	536	19	3	178	3	FUT11	10	75532267	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	48077822	75532267	60002480	37	856										
LRIT1	0	genome.wustl.edu	37	chr10	85993929	85993929	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	agtgctgtgccacccaaaagGgacctgatgctggccactcc	11	14	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	85993929	85993929	G	A	SNP	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	silent	c.795	p.S265	0.698	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	37	0	0	24	13	35.14	-	-	-	A	85993929	G	A	85993929	2	1	17	1	0	0	0	0	0	0	0	1	9013	1219	43	4		4	LRIT1	10	85993929	Silent	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	10461662	85993929	49540818	38	857										
C10orf88	0	genome.wustl.edu	37	chr10	124708257	124708257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tatggtttggaccttgtcaaGgtctatccttgatcctagag	10	8	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	124708257	124708257	G	T	SNP	C10orf88	ENST00000481909	human	ensembl	69_37n	-1	known	missense	c.556	p.L186I	1.000	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965	146	0	0	67	53	44.17	-	-	-	T	124708257	G	T	124708257	3	4	17	1	0	0	0	0	1	0	0	0	1632	1000	35	4	793	4	C10orf88	10	124708257	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	38714328	124708257	10826490	39	858										
TUBGCP2	0	genome.wustl.edu	37	chr10	135113545	135113545	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cagcgggtcaaggttccttgTatttttagatttcagttcat	9	7	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	10	135113545	135113545	T	C	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	missense	c.223	p.T75A	0.070	NULL	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	193	0	0	92	57	38.26	-	-	-	C	135113545	T	C	135113545	3	2	17	1	0	0	0	0	1	0	0	0	16863	1638	57	5	2549	5	TUBGCP2	10	135113545	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	10405288	135113545	421202	40	859										
NPAS4	0	genome.wustl.edu	37	chr11	66191919	66191919	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ttcccagcacagccaccttcCcagagcctctgggcagccct	8	19	1	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	11	66191919	66191919	C	G	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.1558	p.P520A	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	52	0	0	44	30	40.54	-	-	-	G	66191919	C	G	66191919	3	3	17	1	0	0	0	0	1	0	0	0	10637	623	22	4	1584	4	NPAS4	11	66191919	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		66191919	68814597	41	860										
EXPH5	0	genome.wustl.edu	37	chr11	108381259	108381259	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	atgctttccgttctcactcaAcctgctttcgccaatggact	6	14	2	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	11	108381259	108381259	A	T	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.4975	p.L1659M	0.000	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	136	0	0	21	62	74.7	-	-	-	T	108381259	A	T	108381259	3	4	17	1	0	0	0	0	1	0	0	0	5359	40	2	5	998	5	EXPH5	11	108381259	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	42189340	108381259	26625257	42	861										
IFLTD1	0	genome.wustl.edu	37	chr12	25679085	25679085	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aatcaggacttgctctaaacTtgtcttgttccttccaaaga	6	10	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	12	25679085	25679085	T	G	SNP	IFLTD1	ENST00000458174	human	ensembl	69_37n	-1	known	missense	c.746	p.K249T	0.238	pfam_Lamin_tail_dom	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC	ENSG00000152936	104	0	0	84	63	42.86	-	-	-	G	25679085	T	G	25679085	3	3	17	1	0	0	0	0	1	0	0	0	7584	1609	56	5	499	5	IFLTD1	12	25679085	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09		25679085	108172810	43	862										
TM7SF3	0	genome.wustl.edu	37	chr12	27127095	27127095	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gaagaacggtcgtcctctctCtcttcgaatctgtaacgtaa	8	11	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	12	27127095	27127095	C	A	SNP	TM7SF3	ENST00000343028	human	ensembl	69_37n	-1	known	nonsense	c.1516	p.E506*	1.000	NULL	NULL	-	no_errors	TM7SF3	HGNC	ENSG00000064115	110	0	0	74	56	43.08	-	-	-	A	27127095	C	A	27127095	4	1	17	1	0	0	0	0	0	1	0	0	16070	922	32	2	200	2	TM7SF3	12	27127095	Nonsense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1448010	27127095	106724800	44	863										
ACVR1B	0	genome.wustl.edu	37	chr12	52374976	52374976	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cttggatttattgctgctgaCaataaaggtaagggctgggc	13	6	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	12	52374976	52374976	C	G	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	missense	c.804	p.D268E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	89	0	0	54	43	44.33	-	-	-	G	52374976	C	G	52374976	3	3	17	1	0	0	0	0	1	0	0	0	221	477	17	4	818	4	ACVR1B	12	52374976	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	25247881	52374976	81476919	45	864										
NALCN	0	genome.wustl.edu	37	chr13	101712242	101712242	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgggtggtctcgatgctgggCgggttcagaaaccggctcag	17	9	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	13	101712242	101712242	C	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.4833	p.P1611	0.079	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	63	0	0	45	38	45.78	-	-	-	T	101712242	C	T	101712242	2	4	17	1	0	0	0	0	0	0	0	1	10220	755	27	1		1	NALCN	13	101712242	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		101712242	13457636	46	865										
FAM155A	0	genome.wustl.edu	37	chr13	108518417	108518417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gtgaagcactggcccgaggaCgcgccctgggggtaacaagt	16	11	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	13	108518417	108518417	C	T	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	silent	c.528	p.A176	0.984	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	11	0	0	6	5	45.45	-	-	-	T	108518417	C	T	108518417	2	4	17	1	0	0	0	0	0	0	0	1	5505	523	19	1		1	FAM155A	13	108518417	Silent	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	6806175	108518417	6651461	47	866										
OR11H4	0	genome.wustl.edu	37	chr14	20711110	20711110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgaccttgctgggaaatggaGccatcatctatgcagtgaga	12	8	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	14	20711110	20711110	G	T	SNP	OR11H4	ENST00000315409	human	ensembl	69_37n	1	known	missense	c.160	p.A54S	0.002	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR11H4	HGNC	ENSG00000176198	68	0	0	38	42	52.5	-	-	-	T	20711110	G	T	20711110	3	4	17	1	0	0	0	0	1	0	0	0	11001	971	34	4	162	4	OR11H4	14	20711110	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		20711110	86638430	48	867										
OR10G2	0	genome.wustl.edu	37	chr14	22102870	22102870	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	agaatgagcaggttccccagCtgagtgaggatgtaaatgat	13	6	0	5			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	14	22102870	22102870	C	G	SNP	OR10G2	ENST00000542433	human	ensembl	69_37n	-1	known	missense	c.129	p.Q43H	0.994	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582	42	0	0	29	33	53.23	-	-	-	G	22102870	C	G	22102870	3	3	17	1	0	0	0	0	1	0	0	0	10972	796	28	4	806	4	OR10G2	14	22102870	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1391760	22102870	85246670	49	868										
NPAS3	0	genome.wustl.edu	37	chr14	34269056	34269056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	acaacgacatgaactgcaacGacgacggccacagctccagt	9	14	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	14	34269056	34269056	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	69_37n	1	known	missense	c.1543	p.D515N	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS3	HGNC	ENSG00000151322	19	0	0	15	18	54.55	-	-	-	A	34269056	G	A	34269056	3	1	17	1	0	0	0	0	1	0	0	0	10636	1058	37	1	1644	1	NPAS3	14	34269056	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	12166186	34269056	73080484	50	869										
FRMD6	0	genome.wustl.edu	37	chr14	52186774	52186774	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgtgttccccaccacgtagaGaagaagcagtaccgggaatc	11	11	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	14	52186774	52186774	G	T	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.1026	p.E342D	0.998	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	22	0	0	12	7	36.84	-	-	-	T	52186774	G	T	52186774	3	4	17	1	0	0	0	0	1	0	0	0	6103	956	33	2	1040	2	FRMD6	14	52186774	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	17917718	52186774	55162766	51	870										
TRAF3	0	genome.wustl.edu	37	chr14	103336784	103336784	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgcatggcggccctgctgagGtaggcgccctcgcccggccc	15	17	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	14	103336784	103336784	G	T	SNP	TRAF3	ENST00000392745	human	ensembl	69_37n	1	known	splice_site	c.245+1	e1+1	1.000	-	-	-	no_errors	TRAF3	HGNC	ENSG00000131323	27	0	0	14	10	41.67	-	-	-	T	103336784	G	T	103336784	5	4	17	1	0	0	0	0	0	0	1	0	16535	1275	44	4	248	4	TRAF3	14	103336784	Splice_Site	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	51150010	103336784	4012756	52	871										
FMN1	0	genome.wustl.edu	37	chr15	33359400	33359400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ccacctggtcctggctggggCgacgctctgtctgaagacca	13	14	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	15	33359400	33359400	C	T	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.686	p.R229H	0.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	32	0	0	30	29	49.15	-	-	-	T	33359400	C	T	33359400	3	4	17	1	0	0	0	0	1	0	0	0	5995	768	27	1	2972	1	FMN1	15	33359400	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		33359400	69171992	53	872										
ZNF592	0	genome.wustl.edu	37	chr15	85325940	85325940	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aaaccccagattttgatgacCttctggctgcctttgacatc	7	12	1	4			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	15	85325940	85325940	C	A	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.34	p.L12I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	61	0	0	42	18	30	-	-	-	A	85325940	C	A	85325940	3	1	17	1	0	0	0	0	1	0	0	0	18118	681	24	4	36	4	ZNF592	15	85325940	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	51966540	85325940	17205452	54	873										
GPR179	0	genome.wustl.edu	37	chr17	36485058	36485058	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	caggagcatctcctgcctccCacagacacacttcagcaatg	7	16	2	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	17	36485058	36485058	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	nonsense	c.4394	p.W1465*	0.975	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	103	0	0	59	43	42.16	-	-	-	T	36485058	C	T	36485058	4	4	17	1	0	0	0	0	0	1	0	0	6724	595	21	4	2713	4	GPR179	17	36485058	Nonsense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		36485058	44710152	55	874										
MPO	0	genome.wustl.edu	37	chr17	56348081	56348081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tactgcagttgacaaagtccCggggatatgagttggacatg	13	7	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	17	56348081	56348081	C	T	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	missense	c.2270	p.R757Q	0.007	superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	168	0	0	140	108	43.55	-	-	-	T	56348081	C	T	56348081	3	4	17	1	0	0	0	0	1	0	0	0	9804	652	23	1	67	1	MPO	17	56348081	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	19863023	56348081	24847129	56	875										
B4GALT6	0	genome.wustl.edu	37	chr18	29211065	29211065	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tctttcatggcctctttgaaGcccacattgaaaagcatcgc	7	12	3	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	18	29211065	29211065	G	A	SNP	B4GALT6	ENST00000306851	human	ensembl	69_37n	-1	known	silent	c.633	p.G211	1.000	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT6	HGNC	ENSG00000118276	59	0	0	37	14	27.45	-	-	-	A	29211065	G	A	29211065	2	1	17	1	0	0	0	0	0	0	0	1	1279	958	34	4		4	B4GALT6	18	29211065	Silent	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		29211065	48866183	57	876										
RTTN	0	genome.wustl.edu	37	chr18	67721498	67721498	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gaagcctggacaaagaggatAggtattccaggagaaaggaa	14	5	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	18	67721498	67721498	A	G	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.5054	p.L1685P	0.997	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	79	0	0	51	33	39.29	-	-	-	G	67721498	A	G	67721498	3	3	17	1	0	0	0	0	1	0	0	0	13823	420	15	5	1674	5	RTTN	18	67721498	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	38510433	67721498	10355750	58	877										
FBN3	0	genome.wustl.edu	37	chr19	8171110	8171110	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cctggcagctcttggcactcGtcgatgtctgtcaggaagta	12	11	3	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	8171110	8171110	G	C	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.4695	p.D1565E	0.994	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	36	0	0	24	20	45.45	-	-	-	C	8171110	G	C	8171110	3	2	17	1	0	0	0	0	1	0	0	0	5750	1136	40	3	3842	3	FBN3	19	8171110	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		8171110	50957873	59	878										
ZNF562	0	genome.wustl.edu	37	chr19	9768710	9768710	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gaggccaggttcatgtagttCtccagcatcacatctctgta	9	11	4	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	9768710	9768710	C	G	SNP	ZNF562	ENST00000448622	human	ensembl	69_37n	-1	known	missense	c.216	p.E72D	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466	140	0	0	66	49	42.61	-	-	-	G	9768710	C	G	9768710	3	3	17	1	0	0	0	0	1	0	0	0	18089	912	32	2	1076	2	ZNF562	19	9768710	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1597600	9768710	49360273	60	879										
COL5A3	0	genome.wustl.edu	37	chr19	10097018	10097018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ccagctgagcctgggggcccCtcctcgccagcctgccccgc	12	21	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	10097018	10097018	C	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.2325	p.E775D	0.966	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	34	0	0	23	18	43.9	-	-	-	A	10097018	C	A	10097018	3	1	17	1	0	0	0	0	1	0	0	0	3728	680	24	4	3064	4	COL5A3	19	10097018	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	328308	10097018	49031965	61	880										
USE1	0	genome.wustl.edu	37	chr19	17330504	17330504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	actgaagacggagtcagagcGtctggagcagcacacgcaga	14	10	2	4			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	17330504	17330504	G	A	SNP	USE1	ENST00000263897	human	ensembl	69_37n	1	known	missense	c.662	p.R221H	1.000	pfam_Vesicle_transport_protein_Use1	pfam_Vesicle_transport_protein_Use1	-	no_errors	USE1	HGNC	ENSG00000053501	90	0	0	57	32	35.96	-	-	-	A	17330504	G	A	17330504	3	1	17	1	0	0	0	0	1	0	0	0	17128	1145	40	1	692	1	USE1	19	17330504	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	7233486	17330504	41798479	62	881										
COMP	0	genome.wustl.edu	37	chr19	18897405	18897405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cctataccatcgccatcactGtccttctggtctgagttggg	9	13	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	18897405	18897405	G	A	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	silent	c.1191	p.D397	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	100	0	0	64	40	38.46	-	-	-	A	18897405	G	A	18897405	2	1	17	1	0	0	0	0	0	0	0	1	3754	1368	48	4		4	COMP	19	18897405	Silent	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	1566901	18897405	40231578	63	882										
ZNF571	0	genome.wustl.edu	37	chr19	38055665	38055665	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tccttacattcatagggtttCtctccagtatgagttctcag	7	10	3	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	38055665	38055665	C	A	SNP	ZNF571	ENST00000328550	human	ensembl	69_37n	-1	known	missense	c.1665	p.E555D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479	105	0	0	66	66	50	-	-	-	A	38055665	C	A	38055665	3	1	17	1	0	0	0	0	1	0	0	0	18099	912	32	2	168	2	ZNF571	19	38055665	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	19158260	38055665	21073318	64	883										
MEGF8	0	genome.wustl.edu	37	chr19	42861080	42861080	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gacttaccgctggaggcgtcAcccgtgatttctgggtcctc	12	13	2	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	42861080	42861080	A	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.4777	p.T1593S	0.601	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	40	0	0	16	18	52.94	-	-	-	T	42861080	A	T	42861080	3	4	17	1	0	0	0	0	1	0	0	0	9534	159	6	5	4678	5	MEGF8	19	42861080	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	4805415	42861080	16267903	65	884										
SIGLEC12	0	genome.wustl.edu	37	chr19	52004714	52004714	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gtccccaaggaggtggaatcGgtcccgagtctcctcctgca	12	14	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	52004714	52004714	G	T	SNP	SIGLEC12	ENST00000291707	human	ensembl	69_37n	-1	known	silent	c.274	p.R92	0.039	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC12	HGNC	ENSG00000254521	100	0	0	42	40	48.78	-	-	-	T	52004714	G	T	52004714	2	4	17	1	0	0	0	0	0	0	0	1	14397	1124	39	3		3	SIGLEC12	19	52004714	Silent	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	9143634	52004714	7124269	66	885										
SIGLEC5	0	genome.wustl.edu	37	chr19	52133292	52133292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ctgggttgtttgtggccacaAcctcagcgtagtatgggatc	13	9	1	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	19	52133292	52133292	A	G	SNP	SIGLEC5	ENST00000429354	human	ensembl	69_37n	-1	known	missense	c.215	p.V72A	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	16	0	0	9	3	25	-	-	-	G	52133292	A	G	52133292	3	3	17	1	0	0	0	0	1	0	0	0	14400	43	2	5	1472	5	SIGLEC5	19	52133292	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	128578	52133292	6995691	67	886										
E2F1	0	genome.wustl.edu	37	chr20	32267630	32267630	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	caaggacgttggtgatgtcaTagatgcgccgcttctgcacc	12	11	2	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	20	32267630	32267630	T	C	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	missense	c.503	p.Y168C	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	95	0	0	53	26	32.91	-	-	-	C	32267630	T	C	32267630	3	2	17	1	0	0	0	0	1	0	0	0	4901	1406	49	5	830	5	E2F1	20	32267630	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09		32267630	30757890	68	887										
GTPBP5	0	genome.wustl.edu	37	chr20	60770921	60770921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gaaacggaggcgctggggcaAgctgcttccacagtgagccc	15	12	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	20	60770921	60770921	A	C	SNP	GTPBP5	ENST00000370823	human	ensembl	69_37n	1	known	missense	c.268	p.S90R	0.584	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,tigrfam_GTP-bd_Obg/CgtA	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP5	HGNC	ENSG00000101181	51	0	0	62	33	34.74	-	-	-	C	60770921	A	C	60770921	3	2	17	1	0	0	0	0	1	0	0	0	6934	72	3	5	274	5	GTPBP5	20	60770921	Missense_Mutation	SNP	A	TCGA-A2-A04R-01A-41D-A117-09	28503291	60770921	2254599	69	888										
OSBPL2	0	genome.wustl.edu	37	chr20	60868880	60868880	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	aacccctacactgggaccccCgactggttgtatgcagggga	12	13	0	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	20	60868880	60868880	C	A	SNP	OSBPL2	ENST00000439951	human	ensembl	69_37n	1	known	missense	c.980	p.P327Q	0.709	NULL	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703	82	0	0	87	27	23.68	-	-	-	A	60868880	C	A	60868880	3	1	17	1	0	0	0	0	1	0	0	0	11351	639	23	3	1430	3	OSBPL2	20	60868880	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	97959	60868880	2156640	70	889										
KRTAP11-1	0	genome.wustl.edu	37	chr21	32253424	32253424	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	accccacaggctggctggcaGacagtagagactcctcccac	10	16	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	21	32253424	32253424	G	C	SNP	KRTAP11-1	ENST00000332378	human	ensembl	69_37n	-1	known	silent	c.420	p.V140	0.785	pfam_PMG	pfam_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591	39	0	0	33	19	36.54	-	-	-	C	32253424	G	C	32253424	2	2	17	1	0	0	0	0	0	0	0	1	8570	929	33	2		2	KRTAP11-1	21	32253424	Silent	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		32253424	15876471	71	890										
PEX26	0	genome.wustl.edu	37	chr22	18562697	18562697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	atccaggccctggcagaaatGgatcggtggcaagaagtcct	13	10	0	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	22	18562697	18562697	G	A	SNP	PEX26	ENST00000329627	human	ensembl	69_37n	1	known	missense	c.288	p.M96I	1.000	pfam_Pex26	pfam_Pex26	-	no_errors	PEX26	HGNC	ENSG00000215193	155	0	0	85	66	43.71	-	-	-	A	18562697	G	A	18562697	3	1	17	1	0	0	0	0	1	0	0	0	11820	1348	47	4	294	4	PEX26	22	18562697	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09		18562697	32741869	72	891										
PTCHD1	0	genome.wustl.edu	37	chrX	23411288	23411288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cagcaaaagtacttcagcaaCtacagtcctgtgattgggtt	9	9	1	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	23411288	23411288	C	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.1653	p.N551K	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	82	0	0	42	29	40.85	-	-	-	A	23411288	C	A	23411288	3	1	17	1	0	0	0	0	1	0	0	0	12812	564	20	4	1663	4	PTCHD1	23	23411288	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09		23411288	131859272	73	892										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29935650	29935650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	tgtcagtcctttaatttactGgatgaaaggagaaaaattta	8	4	1	2			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	29935650	29935650	G	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.848	p.W283L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	137	0	0	72	56	43.41	-	-	-	T	29935650	G	T	29935650	3	4	17	1	0	0	0	0	1	0	0	0	7715	1357	47	4	870	4	IL1RAPL1	23	29935650	Missense_Mutation	SNP	G	TCGA-A2-A04R-01A-41D-A117-09	6524362	29935650	125334910	74	893										
CASK	0	genome.wustl.edu	37	chrX	41413141	41413141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gaggtcatccttggctggatCatattcaaattgtgctctta	9	8	4	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	41413141	41413141	C	G	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.1870	p.D624H	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	170	0	0	99	60	37.5	-	-	-	G	41413141	C	G	41413141	3	3	17	1	0	0	0	0	1	0	0	0	2690	826	29	2	938	2	CASK	23	41413141	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	11477491	41413141	113857419	75	894										
EFNB1	0	genome.wustl.edu	37	chrX	68060252	68060252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	cggtcctactactgaagctaCgcaagcggcaccgcaagcac	10	15	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	68060252	68060252	C	T	SNP	EFNB1	ENST00000204961	human	ensembl	69_37n	1	known	missense	c.796	p.R266C	0.998	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB1	HGNC	ENSG00000090776	58	0	0	44	31	41.33	-	-	-	T	68060252	C	T	68060252	3	4	17	1	0	0	0	0	1	0	0	0	4990	536	19	1	814	1	EFNB1	23	68060252	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	26647111	68060252	87210308	76	895										
EDA	0	genome.wustl.edu	37	chrX	69247730	69247730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	agaaagcaggacctcctggaCccaatggccctccaggaccc	10	16	0	1			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	69247730	69247730	C	A	SNP	EDA	ENST00000374552	human	ensembl	69_37n	1	known	missense	c.550	p.P184T	0.997	pfam_Collagen	pfam_TNF,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	-	no_errors	EDA	HGNC	ENSG00000158813	23	0	0	12	17	58.62	-	-	-	A	69247730	C	A	69247730	3	1	17	1	0	0	0	0	1	0	0	0	4938	507	18	4	700	4	EDA	23	69247730	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1187478	69247730	86022830	77	896										
NRK	0	genome.wustl.edu	37	chrX	105184016	105184016	+	Missense_Mutation	SNP	T	T	A													0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	gttaacaggctgtgaacactTcagtgtccgtaagccacatt							TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	105184016	105184016	T	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.3953	p.F1318Y	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	123	0	0	54	68	55.28	-	-	-	A	105184016	T	A	105184016	3	1	17	1	0	0	0	0	1	0	0	0	10728	1783	62	5	4040	5	NRK	23	105184016	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	35936286	105184016	50086544	78	897	5	2								
NRK	0	genome.wustl.edu	37	chrX	105184017	105184017	+	Missense_Mutation	SNP	C	C	A													0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	ttaacaggctgtgaacacttCagtgtccgtaagccacattt							TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	105184017	105184017	C	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.3954	p.F1318L	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	122	0	0	56	67	54.47	-	-	-	A	105184017	C	A	105184017	3	1	17	1	0	0	0	0	1	0	0	0	10728	825	29	2	4041	2	NRK	23	105184017	Missense_Mutation	SNP	C	TCGA-A2-A04R-01A-41D-A117-09	1	105184017	50086543	79	898	5	2								
DUSP9	0	genome.wustl.edu	37	chrX	152915602	152915602	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.102564102564103	8	0.156052579765385	1.97880280638901	3.40106732348112	1.16608022519353	0.672768878718535	1	0	acatctcccccaacttcaacTtcatggggcagttgctggac	8	14	3	0			TCGA-A2-A04R-01A-41D-A117-09	TCGA-A2-A04R-10B-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f8e4326-dfc7-4635-a9b7-a9207a392748	6234c5ee-14f2-427c-9ebc-4911da27a849	X	152915602	152915602	T	A	SNP	DUSP9	ENST00000342782	human	ensembl	69_37n	1	known	missense	c.997	p.F333I	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP9	HGNC	ENSG00000130829	69	0	0	33	29	46.77	-	-	-	A	152915602	T	A	152915602	3	1	17	1	0	0	0	0	1	0	0	0	4867	1609	56	5	1007	5	DUSP9	23	152915602	Missense_Mutation	SNP	T	TCGA-A2-A04R-01A-41D-A117-09	47731585	152915602	2354958	80	899										
DHDDS	0	genome.wustl.edu	37	chr1	26795453	26795453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gagggaccaggctacagtgaCagagcagctgctgcgagagg	17	9	0	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	26795453	26795453	C	T	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	missense	c.836	p.T279I	1.000	NULL	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	46	0	0	21	6	21.43	-	-	-	T	26795453	C	T	26795453	3	4	18	1	0	0	0	0	1	0	0	0	4514	478	17	4	866	4	DHDDS	1	26795453	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		26795453	222455168	1	900										
THBS3	0	genome.wustl.edu	37	chr1	155175935	155175935	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	agcacttgggaagtagggatGagggagagtgcttaaggagg	19	3	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	155175935	155175935	G	T	SNP	THBS3	ENST00000487250	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	THBS3	HGNC	ENSG00000169231	45	0	0	64	9	12.33	-	-	-	T	155175935	G	T	155175935	1	4	18	0	1	0	0	0	0	0	0	0	15950	1305	45	2		2	THBS3	1	155175935	RNA	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	128380482	155175935	94074686	2	901										
PPOX	0	genome.wustl.edu	37	chr1	161140234	161140234	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gtgccatcttcagaagatccAggagtcctgggaatcgtgta	12	9	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	161140234	161140234	A	T	SNP	PPOX	ENST00000539753	human	ensembl	69_37n	1	known	missense	c.319	p.R107W	0.202	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase	-	no_errors	PPOX	HGNC	ENSG00000143224	68	0	0	247	38	13.33	-	-	-	T	161140234	A	T	161140234	3	4	18	1	0	0	0	0	1	0	0	0	12425	175	7	5	1057	5	PPOX	1	161140234	Missense_Mutation	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	5964299	161140234	88110387	3	902										
CFH	0	genome.wustl.edu	37	chr1	196715013	196715013	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cattacttcattcccgttgtCagtatatgctccagcttcat	5	12	3	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	196715013	196715013	C	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.3377	p.S1126L	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	195	0	0	435	178	28.94	-	-	-	T	196715013	C	T	196715013	3	4	18	1	0	0	0	0	1	0	0	0	3312	838	29	2	3477	2	CFH	1	196715013	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	35574779	196715013	52535608	4	903										
SLC30A1	0	genome.wustl.edu	37	chr1	211749391	211749391	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	caaatgctttgcaggggtcaGggaaacatggattcacacaa	11	8	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	211749391	211749391	G	C	SNP	SLC30A1	ENST00000367001	human	ensembl	69_37n	-1	known	missense	c.863	p.P288R	0.242	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385	31	0	0	62	44	41.12	-	-	-	C	211749391	G	C	211749391	3	2	18	1	0	0	0	0	1	0	0	0	14642	1000	35	4	664	4	SLC30A1	1	211749391	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	15034378	211749391	37501230	5	904										
LYST	0	genome.wustl.edu	37	chr1	235872479	235872479	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	caatccactgacagatgttcTgcgacacgtagtcagactct	8	12	3	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	235872479	235872479	T	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.10055	p.Q3352P	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	105	0	0	239	64	21.05	-	-	-	G	235872479	T	G	235872479	3	3	18	1	0	0	0	0	1	0	0	0	9195	1580	55	5	1390	5	LYST	1	235872479	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	24123088	235872479	13378142	6	905										
ZP4	0	genome.wustl.edu	37	chr1	238053232	238053232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ccttgtgttcagccgcgcctGctccttcaactccaactggc	8	17	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	1	238053232	238053232	G	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.335	p.A112E	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	129	1	0.77	468	53	10.17	-	-	-	T	238053232	G	T	238053232	3	4	18	1	0	0	0	0	1	0	0	0	18311	1319	46	4	1327	4	ZP4	1	238053232	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	2180753	238053232	11197389	7	906										
EPAS1	0	genome.wustl.edu	37	chr2	46588144	46588144	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgtgtgaaccaatccagcacCcatcccacatggacatcccc	6	17	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	46588144	46588144	C	A	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	missense	c.694	p.P232T	1.000	smart_PAS	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	102	0	0	61	44	41.9	-	-	-	A	46588144	C	A	46588144	3	1	18	1	0	0	0	0	1	0	0	0	5187	623	22	4	716	4	EPAS1	2	46588144	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		46588144	196611229	8	907										
SFXN5	0	genome.wustl.edu	37	chr2	73172038	73172038	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgagcactctcccagggggcCcaggactgctggggttggcg	17	12	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	73172038	73172038	C	A	SNP	SFXN5	ENST00000461352	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SFXN5	HGNC	ENSG00000144040	35	0	0	23	18	43.9	-	-	-	A	73172038	C	A	73172038	1	1	18	0	1	0	0	0	0	0	0	0	14286	638	22	4		4	SFXN5	2	73172038	RNA	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	26583894	73172038	170027335	9	908										
CCDC142	0	genome.wustl.edu	37	chr2	74708349	74708349	+	Splice_Site	DEL	C	C	-													0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	agccccagcccctcgtctcaCctgcaggctggcagaaaatc							TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	74708349	74708349	C	-	DEL	CCDC142	ENST00000393965	human	ensembl	69_37n	-1	known	splice_site_del	c.1258+1	e3+1	0.987	-	-	-	no_errors	CCDC142	HGNC	ENSG00000135637	189	0	0	107	20	15.75	-	-	-	-	74708349	C	-	74708349	8	5	18	1	0	1	0	1	0	0	1	0	2801	521	18	0	1000	0	CCDC142	2	74708349	Splice_Site	DEL	C	TCGA-A2-A04T-01A-21W-A050-09	1536311	74708349	168491024	10	909										
TACR1	0	genome.wustl.edu	37	chr2	75280768	75280768	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	acttgctcgtggtagcggtcAgaggagtccccggggatctc	15	11	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	75280768	75280768	A	G	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	silent	c.699	p.S233	0.215	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	197	1	0.51	154	96	38.4	-	-	-	G	75280768	A	G	75280768	2	3	18	1	0	0	0	0	0	0	0	1	15597	175	7	5		5	TACR1	2	75280768	Silent	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	572419	75280768	167918605	11	910										
MYO7B	0	genome.wustl.edu	37	chr2	128370129	128370129	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	accggcccatgtccaacctgGagaaggtgcacttcatcgtg	11	13	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	128370129	128370129	G	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	nonsense	c.3271	p.E1091*	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	45	0	0	37	19	33.93	-	-	-	T	128370129	G	T	128370129	4	4	18	1	0	0	0	0	0	1	0	0	10155	1175	41	2	3365	2	MYO7B	2	128370129	Nonsense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	53089361	128370129	114829244	12	911										
MMADHC	0	genome.wustl.edu	37	chr2	150443603	150443603	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ttaagagataatttactcacAttggccatctccgctggaga	8	9	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	150443603	150443603	A	G	SNP	MMADHC	ENST00000303319	human	ensembl	69_37n	-1	known	silent	c.9	p.N3	1.000	NULL	pfam_MMADHC	-	no_errors	MMADHC	HGNC	ENSG00000168288	154	0	0	251	51	16.89	-	-	-	G	150443603	A	G	150443603	2	3	18	1	0	0	0	0	0	0	0	1	9713	231	8	5		5	MMADHC	2	150443603	Silent	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	22073474	150443603	92755770	13	912										
WIPF1	0	genome.wustl.edu	37	chr2	175432743	175432743	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gatggcaactgaggggtagcAggcagggcccgagatgtgct	18	8	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	175432743	175432743	A	G	SNP	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	silent	c.1188	p.P396	0.873	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	106	1	0.93	101	50	33.11	-	-	-	G	175432743	A	G	175432743	2	3	18	1	0	0	0	0	0	0	0	1	17464	175	7	5		5	WIPF1	2	175432743	Silent	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	24989140	175432743	67766630	14	913										
KCTD18	0	genome.wustl.edu	37	chr2	201354837	201354837	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ctttcatcaatttcccttgtTcttcccgttctcagtccgca	4	15	4	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	201354837	201354837	T	A	SNP	KCTD18	ENST00000359878	human	ensembl	69_37n	-1	known	missense	c.1267	p.N423Y	0.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729	97	0	0	70	37	34.58	-	-	-	A	201354837	T	A	201354837	3	1	18	1	0	0	0	0	1	0	0	0	8159	1783	62	5	17	5	KCTD18	2	201354837	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	25922094	201354837	41844536	15	914										
UGT1A3	0	genome.wustl.edu	37	chr2	234638355	234638355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	caaacccttcctcctatattCctagattactaacaaccaat	1	14	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	2	234638355	234638355	C	T	SNP	UGT1A3	ENST00000482026	human	ensembl	69_37n	1	known	missense	c.583	p.P195S	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	270	0	0	355	135	27.49	-	-	-	T	234638355	C	T	234638355	3	4	18	1	0	0	0	0	1	0	0	0	17043	855	30	2	585	2	UGT1A3	2	234638355	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	33283518	234638355	8561018	16	915										
TGM4	0	genome.wustl.edu	37	chr3	44943399	44943399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgagaatggcgagaaaatcaCcagtatgacccacgactctg	10	10	2	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	3	44943399	44943399	C	T	SNP	TGM4	ENST00000296125	human	ensembl	69_37n	1	known	missense	c.947	p.T316I	0.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810	109	0	0	32	50	60.98	-	-	-	T	44943399	C	T	44943399	3	4	18	1	0	0	0	0	1	0	0	0	15927	507	18	4	977	4	TGM4	3	44943399	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		44943399	153079031	17	916										
CDCP1	0	genome.wustl.edu	37	chr3	45132898	45132898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gctccttaaagaaagtcaggCaggccacctggtctctgggc	12	12	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	3	45132898	45132898	C	A	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	missense	c.1760	p.C587F	0.998	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	70	0	0	17	33	66	-	-	-	A	45132898	C	A	45132898	3	1	18	1	0	0	0	0	1	0	0	0	3122	710	25	4	762	4	CDCP1	3	45132898	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	189499	45132898	152889532	18	917										
PIK3CA	0	genome.wustl.edu	37	chr3	178952084	178952084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgaaacaaatgaatgatgcaCatcatggtggctggacaaca	10	7	1	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	3	178952084	178952084	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3139	p.H1047Y	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0	69	298	81.2	-	-	-	T	178952084	C	T	178952084	3	4	18	1	0	0	0	0	1	0	0	0	11987	478	17	4	3217	4	PIK3CA	3	178952084	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	133819186	178952084	19070346	19	918										
ARL9	0	genome.wustl.edu	37	chr4	57389906	57389906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tacagatatccatgaagcttTggcattatctgaagtgggaa	10	6	1	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	4	57389906	57389906	T	C	SNP	ARL9	ENST00000360096	human	ensembl	69_37n	1	known	missense	c.428	p.L143S	0.995	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL9	HGNC	ENSG00000196503	171	0	0	421	132	23.87	-	-	-	C	57389906	T	C	57389906	3	2	18	1	0	0	0	0	1	0	0	0	952	1821	63	5	246	5	ARL9	4	57389906	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09		57389906	133764370	20	919										
RUFY3	0	genome.wustl.edu	37	chr4	71588300	71588300	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gctgagtcatcatgtctgctCtgacgcctccgaccgatatg	10	13	4	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	4	71588300	71588300	C	G	SNP	RUFY3	ENST00000226328	human	ensembl	69_37n	1	known	missense	c.10	p.L4V	1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	248	0	0	483	80	14.18	-	-	-	G	71588300	C	G	71588300	3	3	18	1	0	0	0	0	1	0	0	0	13826	912	32	2	374	2	RUFY3	4	71588300	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	14198394	71588300	119565976	21	920										
ALPK1	0	genome.wustl.edu	37	chr4	113352476	113352476	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	aacttatcagggtttagttcCtctgcaagctgggaggaagt	12	7	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	4	113352476	113352476	C	G	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	1	known	silent	c.1773	p.S591	0.042	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	119	0	0	158	120	43.17	-	-	-	G	113352476	C	G	113352476	2	3	18	1	0	0	0	0	0	0	0	1	544	668	24	4		4	ALPK1	4	113352476	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	41764176	113352476	77801800	22	921										
FRG1	0	genome.wustl.edu	37	chr4	190876278	190876278	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ttcagatgcaattggaccaaGagaacaatgggaaccagtct	10	8	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	4	190876278	190876278	G	A	SNP	FRG1	ENST00000226798	human	ensembl	69_37n	1	known	missense	c.404	p.R135K	1.000	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536	43	0	0	164	22	11.83	-	-	-	A	190876278	G	A	190876278	3	1	18	1	0	0	0	0	1	0	0	0	6095	942	33	2	422	2	FRG1	4	190876278	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	77523802	190876278	277998	23	922										
SLC6A3	0	genome.wustl.edu	37	chr5	1441547	1441547	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tggccgagggccagctccatGtagaaaagtggcatcccagc	13	12	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	5	1441547	1441547	G	T	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	nonsense	c.345	p.Y115*	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	72	0	0	68	32	32	-	-	-	T	1441547	G	T	1441547	4	4	18	1	0	0	0	0	0	1	0	0	14774	1372	48	4	1569	4	SLC6A3	5	1441547	Nonsense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		1441547	179473713	24	923										
MAML1	0	genome.wustl.edu	37	chr5	179193106	179193106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cccagtccaaacctgatgccGgcatcagcccaggcccagaa	9	17	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	5	179193106	179193106	G	A	SNP	MAML1	ENST00000292599	human	ensembl	69_37n	1	known	silent	c.1095	p.P365	0.402	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	74	0	0	62	39	38.61	-	-	-	A	179193106	G	A	179193106	2	1	18	1	0	0	0	0	0	0	0	1	9276	1103	39	1		1	MAML1	5	179193106	Silent	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	177751559	179193106	1722154	25	924										
BYSL	0	genome.wustl.edu	37	chr6	41899224	41899224	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cgagatgacgttgctgaataCaaacgactcaacttccatct	7	11	2	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	6	41899224	41899224	C	A	SNP	BYSL	ENST00000230340	human	ensembl	69_37n	1	known	nonsense	c.795	p.Y265*	1.000	pfam_Bystin	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578	31	0	0	53	35	39.77	-	-	-	A	41899224	C	A	41899224	4	1	18	1	0	0	0	0	0	1	0	0	1585	489	17	4	813	4	BYSL	6	41899224	Nonsense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		41899224	129215843	26	925										
DST	0	genome.wustl.edu	37	chr6	56418240	56418241	+	Frame_Shift_Ins	INS	-	-	T													0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	attttcaccttctgcaatggINSttttttcatacatatgagac							TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	6	56418240	56418241	-	T	INS	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.15257_15256	p.T5086fs	0.997:1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	86	0	0	264	44	14.29	-	-	-	T	56418241	-	T	56418240	7	5	18	1	0	1	1	0	0	0	0	0	4818	1261	44	0	8206	0	DST	6	56418240	Frame_Shift_Ins	INS	-	TCGA-A2-A04T-01A-21W-A050-09	14519016	56418240	114696827	27	926										
OOEP	0	genome.wustl.edu	37	chr6	74079480	74079480	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgggccggagtctgtttgccCcgctgggactcagcggcacc	15	14	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	6	74079480	74079480	C	A	SNP	OOEP	ENST00000370359	human	ensembl	69_37n	-1	known	silent	c.36	p.R12	0.000	NULL	NULL	-	no_errors	OOEP	HGNC	ENSG00000203907	42	0	0	27	27	47.37	-	-	-	A	74079480	C	A	74079480	2	1	18	1	0	0	0	0	0	0	0	1	10943	610	22	4		4	OOEP	6	74079480	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	17661240	74079480	97035587	28	927										
MDN1	0	genome.wustl.edu	37	chr6	90497640	90497640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	acctcggccaggaatcaagaGctctccattctccaagagag	9	13	3	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	6	90497640	90497640	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.1267	p.L423F	0.998	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	127	0	0	206	255	55.31	-	-	-	A	90497640	G	A	90497640	3	1	18	1	0	0	0	0	1	0	0	0	9486	971	34	4	15903	4	MDN1	6	90497640	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	16418160	90497640	80617427	29	928										
EGFR	0	genome.wustl.edu	37	chr7	55249078	55249078	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gtgcagctcatcacgcagctCatgcccttcggctgcctcct	9	17	3	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	7	55249078	55249078	C	G	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	silent	c.2376	p.L792	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	43	0	0	30	13	30.23	-	-	-	G	55249078	C	G	55249078	2	3	18	1	0	0	0	0	0	0	0	1	5002	813	29	2		2	EGFR	7	55249078	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		55249078	103889585	30	929										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99621358	99621358	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cccgagaggctctcagtcggCtgaaggaactttgtcatcag	12	11	3	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	7	99621358	99621358	C	G	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	missense	c.229	p.L77V	0.992	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	231	0	0	82	55	40.15	-	-	-	G	99621358	C	G	99621358	3	3	18	1	0	0	0	0	1	0	0	0	17782	796	28	4	231	4	ZKSCAN1	7	99621358	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	44372280	99621358	59517305	31	930										
UBN2	0	genome.wustl.edu	37	chr7	138954156	138954156	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ccagcattgagttacagctaCaagaactaggccctgtcatt	8	11	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	7	138954156	138954156	C	A	SNP	UBN2	ENST00000483726	human	ensembl	69_37n	1	putative	nonsense	c.789	p.Y263*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN2	HGNC	ENSG00000157741	101	0	0	173	43	19.91	-	-	-	A	138954156	C	A	138954156	4	1	18	1	0	0	0	0	0	1	0	0	16990	479	17	4	1513	4	UBN2	7	138954156	Nonsense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	39332798	138954156	20184507	32	931										
JHDM1D	0	genome.wustl.edu	37	chr7	139801836	139801836	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ggttagaaggagttcggacaTtatgatctcgaagtttcctc	11	7	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	7	139801836	139801836	T	C	SNP	JHDM1D	ENST00000397560	human	ensembl	69_37n	-1	known	missense	c.1553	p.N518S	0.971	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459	160	0	0	89	217	70.92	-	-	-	C	139801836	T	C	139801836	3	2	18	1	0	0	0	0	1	0	0	0	8002	1493	52	5	1308	5	JHDM1D	7	139801836	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	847680	139801836	19336827	33	932										
CLCN1	0	genome.wustl.edu	37	chr7	143028368	143028368	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	accaatttccgaatggatttCccctttgacctgaaggaact	7	11	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	7	143028368	143028368	C	T	SNP	CLCN1	ENST00000343257	human	ensembl	69_37n	1	known	silent	c.1023	p.F341	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037	303	0	0	395	113	22.16	-	-	-	T	143028368	C	T	143028368	2	4	18	1	0	0	0	0	0	0	0	1	3492	854	30	2		2	CLCN1	7	143028368	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	3226532	143028368	16110295	34	933										
CRISPLD1	0	genome.wustl.edu	37	chr8	75898239	75898239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cattatgaagtgtaccgcgcGggagtggctcagagtaacca	13	9	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	8	75898239	75898239	G	T	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	missense	c.17	p.R6L	0.099	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	141	0	0	178	37	17.21	-	-	-	T	75898239	G	T	75898239	3	4	18	1	0	0	0	0	1	0	0	0	3912	1116	39	3	19	3	CRISPLD1	8	75898239	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		75898239	70465783	35	934										
NBN	0	genome.wustl.edu	37	chr8	90983465	90983465	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gttttctttcctgccgtcctGacagatcaacatttttactt	5	11	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	8	90983465	90983465	G	A	SNP	NBN	ENST00000265433	human	ensembl	69_37n	-1	known	missense	c.638	p.S213L	0.805	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	106	1	0.93	319	64	16.67	-	-	-	A	90983465	G	A	90983465	3	1	18	1	0	0	0	0	1	0	0	0	10263	1294	45	2	1670	2	NBN	8	90983465	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	15085226	90983465	55380557	36	935										
POP1	0	genome.wustl.edu	37	chr8	99170475	99170475	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gcctctctgcagtatcgattTgcgaggattgctattgaggt	12	8	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	8	99170475	99170475	T	G	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	missense	c.3051	p.F1017L	1.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	151	0	0	81	19	19	-	-	-	G	99170475	T	G	99170475	3	3	18	1	0	0	0	0	1	0	0	0	12325	1809	63	5	3109	5	POP1	8	99170475	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	8187010	99170475	47193547	37	936										
SYBU	0	genome.wustl.edu	37	chr8	110592199	110592199	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgctgccaggcttgtgtgacGaagctccattactccgccca	10	14	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	8	110592199	110592199	G	C	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.563	p.S188W	0.453	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	155	0	0	185	86	31.73	-	-	-	C	110592199	G	C	110592199	3	2	18	1	0	0	0	0	1	0	0	0	15518	1059	37	3	1440	3	SYBU	8	110592199	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	11421724	110592199	35771823	38	937										
GPR20	0	genome.wustl.edu	37	chr8	142367953	142367953	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ccagcccgctggcattggtcCgcactgttgtcactgcggtg	13	14	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	8	142367953	142367953	C	A	SNP	GPR20	ENST00000377741	human	ensembl	69_37n	-1	known	missense	c.71	p.R24L	0.420	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR20	HGNC	ENSG00000204882	16	0	0	16	17	51.52	-	-	-	A	142367953	C	A	142367953	3	1	18	1	0	0	0	0	1	0	0	0	6730	652	23	3	1009	3	GPR20	8	142367953	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	31775754	142367953	3996069	39	938										
KIAA0020	0	genome.wustl.edu	37	chr9	2812326	2812326	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	taggaccttccttccatattTgtcatttactatgctaggca	6	10	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	9	2812326	2812326	T	G	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.1306	p.K436Q	1.000	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	268	0	0	159	501	75.91	-	-	-	G	2812326	T	G	2812326	3	3	18	1	0	0	0	0	1	0	0	0	8204	1821	63	5	660	5	KIAA0020	9	2812326	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09		2812326	138401105	40	939										
UHRF2	0	genome.wustl.edu	37	chr9	6421074	6421074	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	taaagaaagctccgagggtaGgaccttccaatcagccatct	9	11	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	9	6421074	6421074	G	C	SNP	UHRF2	ENST00000276893	human	ensembl	69_37n	1	known	missense	c.316	p.G106R	0.994	NULL	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854	174	0	0	622	80	11.38	-	-	-	C	6421074	G	C	6421074	3	2	18	1	0	0	0	0	1	0	0	0	17067	1001	35	4	322	4	UHRF2	9	6421074	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	3608748	6421074	134792357	41	940										
MUSK	0	genome.wustl.edu	37	chr9	113550132	113550132	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ctattaggtatgaaaatacaAgtgaggatatgtatttcatc	8	4	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	9	113550132	113550132	A	C	SNP	MUSK	ENST00000374438	human	ensembl	69_37n	1	known	missense	c.489	p.Q163H	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	80	0	0	97	16	14.16	-	-	-	C	113550132	A	C	113550132	3	2	18	1	0	0	0	0	1	0	0	0	10061	87	3	5		5	MUSK	9	113550132	Missense_Mutation	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	107129058	113550132	27663299	42	941										
KIAA0368	0	genome.wustl.edu	37	chr9	114184460	114184460	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gcacaagcgctatatccttaGtgaataaatgtggcatccga	9	9	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	9	114184460	114184460	G	C	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.1820	p.T607S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	222	0	0	202	82	28.87	-	-	-	C	114184460	G	C	114184460	3	2	18	1	0	0	0	0	1	0	0	0	8223	1029	36	4	4381	4	KIAA0368	9	114184460	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	634328	114184460	27028971	43	942										
BICC1	0	genome.wustl.edu	37	chr10	60556134	60556134	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	aagtgttgagcgaaatgcctTaaatatgtatgaagcaagga	11	4	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	10	60556134	60556134	T	C	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.1214	p.L405S	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	190	0	0	263	96	26.74	-	-	-	C	60556134	T	C	60556134	3	2	18	1	0	0	0	0	1	0	0	0	1432	1764	61	5	1252	5	BICC1	10	60556134	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09		60556134	74978613	44	943										
PLCE1	0	genome.wustl.edu	37	chr10	96058145	96058146	+	Frame_Shift_Ins	INS	-	-	AC													0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gggggtttaggttcctgtgaINSaggcattcgacagacctggg							TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	10	96058145	96058146	-	AC	INS	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	frame_shift_ins	c.5177_5178	p.G1727fs	1.000:0.997	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	114	0	0	84	13	13.4	-	-	-	AC	96058146	-	AC	96058145	7	5	18	1	0	1	1	0	0	0	0	0	12108	246	9	0	5553	0	PLCE1	10	96058145	Frame_Shift_Ins	INS	-	TCGA-A2-A04T-01A-21W-A050-09	35502011	96058145	39476602	45	944										
MAP4K2	0	genome.wustl.edu	37	chr11	64557417	64557417	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gctccagaaggccagcacacTgtcctgcaggcacactatgg	11	14	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	11	64557417	64557417	T	A	SNP	MAP4K2	ENST00000294066	human	ensembl	69_37n	-1	known	missense	c.2263	p.S755C	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067	51	0	0	6	8	57.14	-	-	-	A	64557417	T	A	64557417	3	1	18	1	0	0	0	0	1	0	0	0	9331	1580	55	5	211	5	MAP4K2	11	64557417	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09		64557417	70449099	46	945										
CDCA5	0	genome.wustl.edu	37	chr11	64846795	64846795	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gcacgtctcccagagcacacGgcagagaaaaacccctgcct	9	16	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	11	64846795	64846795	G	A	SNP	CDCA5	ENST00000404147	human	ensembl	69_37n	-1	novel	silent	c.708	p.A236	0.000	NULL	pfam_Sororin	-	no_errors	CDCA5	HGNC	ENSG00000146670	246	1	0.4	145	63	30.14	-	-	-	A	64846795	G	A	64846795	2	1	18	1	0	0	0	0	0	0	0	1	3118	1131	39	1		1	CDCA5	11	64846795	Silent	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	289378	64846795	70159721	47	946										
CD248	0	genome.wustl.edu	37	chr11	66082644	66082644	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gctctgagagggcaggagggTggggagggctgcgggctggg	25	6	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	11	66082644	66082644	T	G	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	missense	c.1855	p.T619P	0.007	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	72	0	0	141	19	11.45	-	-	-	G	66082644	T	G	66082644	3	3	18	1	0	0	0	0	1	0	0	0	3018	1696	59	5	422	5	CD248	11	66082644	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	1235849	66082644	68923872	48	947										
LRRC32	0	genome.wustl.edu	37	chr11	76371666	76371666	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ggatgagctcaatctcattgTagctcaaatccagattcaag	8	9	4	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	11	76371666	76371666	T	C	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	missense	c.971	p.Y324C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	56	0	0	69	13	15.48	-	-	-	C	76371666	T	C	76371666	3	2	18	1	0	0	0	0	1	0	0	0	9053	1638	57	5	1021	5	LRRC32	11	76371666	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	10289022	76371666	58634850	49	948										
KIAA1377	0	genome.wustl.edu	37	chr11	101833406	101833406	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	agctgaaacatcatccttgtCtaatgtaacttctaattatg	5	8	3	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	11	101833406	101833406	C	G	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.1640	p.S547C	0.017	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	63	0	0	64	61	48.8	-	-	-	G	101833406	C	G	101833406	3	3	18	1	0	0	0	0	1	0	0	0	8279	913	32	2	1662	2	KIAA1377	11	101833406	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	25461740	101833406	33173110	50	949										
PRB2	0	genome.wustl.edu	37	chr12	11546698	11546698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ggggacttcgggacttgtctCcttgtgggggtggtccttgt	17	8	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	12	11546698	11546698	C	T	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.314	p.G105E	0.000	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	301	0	0	1584	212	11.8	-	-	-	T	11546698	C	T	11546698	3	4	18	1	0	0	0	0	1	0	0	0	12524	855	30	2	940	2	PRB2	12	11546698	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		11546698	122305197	51	950										
AEBP2	0	genome.wustl.edu	37	chr12	19615485	19615485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgtagacagcacaatttccaGtgggcgttcaactccagcaa	9	11	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	12	19615485	19615485	G	A	SNP	AEBP2	ENST00000398864	human	ensembl	69_37n	1	known	missense	c.713	p.S238N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	197	0	0	237	220	48.14	-	-	-	A	19615485	G	A	19615485	3	1	18	1	0	0	0	0	1	0	0	0	350	1029	36	4	719	4	AEBP2	12	19615485	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	8068787	19615485	114236410	52	951										
WNT1	0	genome.wustl.edu	37	chr12	49374313	49374313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gaatcctgcacgtgtgactaCcggcggcgcggccccggggg	17	14	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	12	49374313	49374313	C	T	SNP	WNT1	ENST00000293549	human	ensembl	69_37n	1	known	silent	c.465	p.Y155	0.996	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt1	-	no_errors	WNT1	HGNC	ENSG00000125084	26	0	0	10	14	58.33	-	-	-	T	49374313	C	T	49374313	2	4	18	1	0	0	0	0	0	0	0	1	17478	518	18	4		4	WNT1	12	49374313	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	29758828	49374313	84477582	53	952										
NAV3	0	genome.wustl.edu	37	chr12	78592404	78592404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gtccatatattattggaacaAtgaatcagggagtttcttca	8	6	3	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	12	78592404	78592404	A	G	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.6466	p.M2156V	1.000	smart_AAA+_ATPase	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	66	0	0	111	17	13.28	-	-	-	G	78592404	A	G	78592404	3	3	18	1	0	0	0	0	1	0	0	0	10257	101	4	5	6538	5	NAV3	12	78592404	Missense_Mutation	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	29218091	78592404	55259491	54	953										
PAN3	0	genome.wustl.edu	37	chr13	28794503	28794503	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgggaagccctgctactgctGgattagcgccaggtaagttg	14	9	0	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	13	28794503	28794503	G	T	SNP	PAN3	ENST00000380958	human	ensembl	69_37n	1	known	nonsense	c.988	p.G330*	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_cat_dom	-	no_errors	PAN3	HGNC	ENSG00000152520	81	0	0	148	77	34.07	-	-	-	T	28794503	G	T	28794503	4	4	18	1	0	0	0	0	0	1	0	0	11488	1349	47	4	1010	4	PAN3	13	28794503	Nonsense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		28794503	86375375	55	954										
NIN	0	genome.wustl.edu	37	chr14	51206034	51206034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ttctccaattaccttctcccGggagtgcgtgagttcggctt	10	12	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	14	51206034	51206034	G	T	SNP	NIN	ENST00000530997	human	ensembl	69_37n	-1	putative	missense	c.4091	p.P1364Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NIN	HGNC	ENSG00000100503	194	0	0	300	159	34.64	-	-	-	T	51206034	G	T	51206034	3	4	18	1	0	0	0	0	1	0	0	0	10489	1115	39	3	953	3	NIN	14	51206034	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		51206034	56143506	56	955										
GPR135	0	genome.wustl.edu	37	chr14	59931648	59931648	+	Frame_Shift_Del	DEL	G	G	-													0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgggccgccactgcagctccGtgcgacagcagcggcgccgc							TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	14	59931648	59931648	G	-	DEL	GPR135	ENST00000395116	human	ensembl	69_37n	-1	known	frame_shift_del	c.297	p.H99fs	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619	21	0	0	6	2	25	-	-	-	-	59931648	G	-	59931648	7	5	18	1	0	1	0	1	0	0	0	0	6694	1136	40	0	1191	0	GPR135	14	59931648	Frame_Shift_Del	DEL	G	TCGA-A2-A04T-01A-21W-A050-09	8725614	59931648	47417892	57	956										
MTHFD1	0	genome.wustl.edu	37	chr14	64891602	64891602	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	agagggcgagcttcatcactCctgttcctggcggcgtaggg	15	11	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	14	64891602	64891602	C	G	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.976	p.P326A	1.000	pfam_THF_DH/CycHdrlase_NAD-bd_dom,prints_THF_DH/CycHdrlase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	226	0	0	134	66	33	-	-	-	G	64891602	C	G	64891602	3	3	18	1	0	0	0	0	1	0	0	0	9999	855	30	2	842	2	MTHFD1	14	64891602	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	4959954	64891602	42457938	58	957										
PAPOLA	0	genome.wustl.edu	37	chr14	96968831	96968832	+	Frame_Shift_Ins	INS	-	-	GG													0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ttggacccagggctgaggcaINSggcccccccctccctcccgc							TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	14	96968831	96968832	-	GG	INS	PAPOLA	ENST00000553357	human	ensembl	69_37n	1	known	frame_shift_ins	c.113_114	p.A39fs	0.996:0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PAPOLA	HGNC	ENSG00000090060	65	0	0	13	2	13.33	-	-	-	GG	96968832	-	GG	96968831	7	5	18	1	0	1	1	0	0	0	0	0	11502	203	7	0		0	PAPOLA	14	96968831	Frame_Shift_Ins	INS	-	TCGA-A2-A04T-01A-21W-A050-09	32077229	96968831	10380709	59	958										
SCG5	0	genome.wustl.edu	37	chr15	32988745	32988745	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	catatctacaaggacagagaCtggataatgttgttgcaaag	10	6	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	15	32988745	32988745	C	T	SNP	SCG5	ENST00000300175	human	ensembl	69_37n	1	known	silent	c.574	p.L192	1.000	pfam_Secretogranin_V	pfam_Secretogranin_V	-	no_errors	SCG5	HGNC	ENSG00000166922	100	0	0	89	53	37.32	-	-	-	T	32988745	C	T	32988745	2	4	18	1	0	0	0	0	0	0	0	1	13980	564	20	4		4	SCG5	15	32988745	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		32988745	69542647	60	959										
TP53BP1	0	genome.wustl.edu	37	chr15	43701229	43701229	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ggaatcccactggcaaggcaCaggaagtacttccgggttcg	13	11	0	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	15	43701229	43701229	C	A	SNP	TP53BP1	ENST00000434595	human	ensembl	69_37n	-1	novel	missense	c.425	p.C142F	1.000	superfamily_BRCT_dom	superfamily_BRCT_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TP53BP1	HGNC	ENSG00000067369	316	0	0	112	223	66.57	-	-	-	A	43701229	C	A	43701229	3	1	18	1	0	0	0	0	1	0	0	0	16479	465	17	4	479	4	TP53BP1	15	43701229	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	10712484	43701229	58830163	61	960										
SPATA5L1	0	genome.wustl.edu	37	chr15	45706785	45706785	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tcagagcattgagtggcctcTgaaattcccttgggaatttg	11	8	2	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	15	45706785	45706785	T	G	SNP	SPATA5L1	ENST00000305560	human	ensembl	69_37n	1	known	missense	c.1451	p.L484R	1.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763	117	0	0	84	37	30.58	-	-	-	G	45706785	T	G	45706785	3	3	18	1	0	0	0	0	1	0	0	0	15103	1580	55	5	1465	5	SPATA5L1	15	45706785	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	2005556	45706785	56824607	62	961										
DMXL2	0	genome.wustl.edu	37	chr15	51828921	51828921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgatccgtgaggactgcctaCagacatcccctcctggtgta	10	13	0	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	15	51828921	51828921	C	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.1756	p.V586L	0.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	98	0	0	81	138	63.01	-	-	-	G	51828921	C	G	51828921	3	3	18	1	0	0	0	0	1	0	0	0	4631	478	17	4	7485	4	DMXL2	15	51828921	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	6122136	51828921	50702471	63	962										
CHD2	0	genome.wustl.edu	37	chr15	93527730	93527730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	attcggagttccactaaaaaGgtgatcaagtgagatgaaag	11	5	1	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	15	93527730	93527730	G	A	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	silent	c.3237	p.K1079	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	407	0	0	378	270	41.6	-	-	-	A	93527730	G	A	93527730	2	1	18	1	0	0	0	0	0	0	0	1	3354	1014	35	4		4	CHD2	15	93527730	Silent	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	41698809	93527730	9003662	64	963										
B3GNT9	0	genome.wustl.edu	37	chr16	67183399	67183399	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cggaaggcagggtgaggctcGggcgtgagccgcaggcgctg	21	10	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	16	67183399	67183399	G	A	SNP	B3GNT9	ENST00000449549	human	ensembl	69_37n	-1	known	silent	c.990	p.P330	0.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT9	HGNC	ENSG00000237172	47	0	0	38	6	13.33	-	-	-	A	67183399	G	A	67183399	2	1	18	1	0	0	0	0	0	0	0	1	1268	1103	39	1		1	B3GNT9	16	67183399	Silent	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		67183399	23171354	65	964										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	262	0	0	112	185	62.29	-	-	-	T	7577120	C	T	7577120	3	4	18	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		7577120	73618090	66	965										
TP53	0	genome.wustl.edu	37	chr17	7578226	7578226	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tatgtcgaaaagtgtttctgTcatccaaatactccacacgc	6	11	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	17	7578226	7578226	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.623	p.D208G	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	414	0	0	209	339	61.86	-	-	-	C	7578226	T	C	7578226	3	2	18	1	0	0	0	0	1	0	0	0	16477	1667	58	5	671	5	TP53	17	7578226	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	1106	7578226	73616984	67	966										
ALDH3A1	0	genome.wustl.edu	37	chr17	19643676	19643676	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	gcgagtggcggcatccccggTgcccccataagccaccttct	11	17	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	17	19643676	19643676	T	G	SNP	ALDH3A1	ENST00000225740	human	ensembl	69_37n	-1	known	missense	c.922	p.T308P	0.426	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602	23	0	0	13	10	41.67	-	-	-	G	19643676	T	G	19643676	3	3	18	1	0	0	0	0	1	0	0	0	497	1696	59	5	459	5	ALDH3A1	17	19643676	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	12065450	19643676	61551534	68	967										
CDC27	0	genome.wustl.edu	37	chr17	45234484	45234484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	agattctaaattcaatctgtTtaattcctgaaacagaaaat	4	6	3	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	17	45234484	45234484	T	C	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	missense	c.637	p.N213D	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	130	1	0.76	85	11	11.46	-	-	-	C	45234484	T	C	45234484	3	2	18	1	0	0	0	0	1	0	0	0	3095	1841	64	5	1907	5	CDC27	17	45234484	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	25590808	45234484	35960726	69	968										
FDXR	0	genome.wustl.edu	37	chr17	72868246	72868246	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tcttctcctgtgtggagaaaTggtggcagaagcctggggcc	15	9	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	17	72868246	72868246	T	C	SNP	FDXR	ENST00000581530	human	ensembl	69_37n	-1	known	missense	c.92	p.H31R	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513	128	0	0	49	28	35.9	-	-	-	C	72868246	T	C	72868246	3	2	18	1	0	0	0	0	1	0	0	0	5853	1464	51	5	1445	5	FDXR	17	72868246	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	27633762	72868246	8326964	70	969										
GALNT1	0	genome.wustl.edu	37	chr18	33289620	33289620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cagcatgtgaacagtaatcaGtgcctggataaagccacaga	10	9	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	18	33289620	33289620	G	T	SNP	GALNT1	ENST00000269195	human	ensembl	69_37n	1	known	missense	c.1566	p.Q522H	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429	72	0	0	215	56	20.66	-	-	-	T	33289620	G	T	33289620	3	4	18	1	0	0	0	0	1	0	0	0	6257	1020	36	4	1608	4	GALNT1	18	33289620	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		33289620	44787628	71	970										
DCC	0	genome.wustl.edu	37	chr18	50976897	50976897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	aattggacaaatgcacccccCgcatggcagtgtcactcctc	8	15	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	18	50976897	50976897	C	T	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.3257	p.P1086L	0.995	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	222	0	0	65	224	77.24	-	-	-	T	50976897	C	T	50976897	3	4	18	1	0	0	0	0	1	0	0	0	4313	652	23	1	3347	1	DCC	18	50976897	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	17687277	50976897	27100351	72	971										
KANK2	0	genome.wustl.edu	37	chr19	11287322	11287322	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	atgtgctgagattctcgagaCagctgacactcctgccggct	11	12	1	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	11287322	11287322	C	A	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	silent	c.1716	p.L572	0.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	53	0	0	27	49	63.64	-	-	-	A	11287322	C	A	11287322	2	1	18	1	0	0	0	0	0	0	0	1	8031	465	17	4		4	KANK2	19	11287322	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09		11287322	47841661	73	972										
ZNF20	0	genome.wustl.edu	37	chr19	12246615	12246615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	aggttcttgaaggtttcctgCatcacatccctgtagagatt	9	9	2	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	12246615	12246615	C	T	SNP	ZNF20	ENST00000334213	human	ensembl	69_37n	-1	known	missense	c.108	p.M36I	0.411	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	110	0	0	160	167	51.07	-	-	-	T	12246615	C	T	12246615	3	4	18	1	0	0	0	0	1	0	0	0	17857	710	25	4	1502	4	ZNF20	19	12246615	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	959293	12246615	46882368	74	973										
ETHE1	0	genome.wustl.edu	37	chr19	44030361	44030361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cacccaactcacgaagcgccCgaagcggatggagtctccat	10	15	2	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	44030361	44030361	C	A	SNP	ETHE1	ENST00000292147	human	ensembl	69_37n	-1	known	missense	c.367	p.G123W	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	ETHE1	HGNC	ENSG00000105755	100	0	0	44	21	32.31	-	-	-	A	44030361	C	A	44030361	3	1	18	1	0	0	0	0	1	0	0	0	5309	652	23	3	417	3	ETHE1	19	44030361	Missense_Mutation	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	31783746	44030361	15098622	75	974										
ZNF230	0	genome.wustl.edu	37	chr19	44514454	44514454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tgcggaagcaggaccacatgAagactgcccttgccagcaaa	11	12	0	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	44514454	44514454	A	G	SNP	ZNF230	ENST00000429154	human	ensembl	69_37n	1	known	missense	c.263	p.E88G	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882	105	0	0	104	22	17.46	-	-	-	G	44514454	A	G	44514454	3	3	18	1	0	0	0	0	1	0	0	0	17880	246	9	5	277	5	ZNF230	19	44514454	Missense_Mutation	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	484093	44514454	14614529	76	975										
TMEM160	0	genome.wustl.edu	37	chr19	47549915	47549915	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	accccgatgcccgatgccagGaggccattgcggaaccagga	13	14	0	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	47549915	47549915	G	A	SNP	TMEM160	ENST00000253047	human	ensembl	69_37n	-1	known	silent	c.237	p.L79	1.000	NULL	NULL	-	no_errors	TMEM160	HGNC	ENSG00000130748	40	0	0	30	35	53.85	-	-	-	A	47549915	G	A	47549915	2	1	18	1	0	0	0	0	0	0	0	1	16170	1161	41	2		2	TMEM160	19	47549915	Silent	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	3035461	47549915	11579068	77	976										
SLC17A7	0	genome.wustl.edu	37	chr19	49935871	49935871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cgccgatgggcacgatgatgGtcatgaccaggtggggcagc	17	10	1	2			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	49935871	49935871	G	A	SNP	SLC17A7	ENST00000221485	human	ensembl	69_37n	-1	known	missense	c.1055	p.T352I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888	72	0	0	43	12	21.82	-	-	-	A	49935871	G	A	49935871	3	1	18	1	0	0	0	0	1	0	0	0	14511	1261	44	4	643	4	SLC17A7	19	49935871	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	2385956	49935871	9193112	78	977										
MYBPC2	0	genome.wustl.edu	37	chr19	50945455	50945455	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	cagcattcacaaagaagctgGatccagcctaccaagtggac	9	12	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	19	50945455	50945455	G	C	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.787	p.D263H	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	96	0	0	138	34	19.54	-	-	-	C	50945455	G	C	50945455	3	2	18	1	0	0	0	0	1	0	0	0	10084	1174	41	2	821	2	MYBPC2	19	50945455	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	1009584	50945455	8183528	79	978										
CSE1L	0	genome.wustl.edu	37	chr20	47712832	47712832	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tcccgtagaagatggggtttGtattggcgcaccaagatctc	12	9	1	3			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	20	47712832	47712832	G	C	SNP	CSE1L	ENST00000469700	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CSE1L	HGNC	ENSG00000124207	89	0	0	105	54	33.96	-	-	-	C	47712832	G	C	47712832	1	2	18	0	1	0	0	0	0	0	0	0	3962	1392	48	4		4	CSE1L	20	47712832	RNA	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		47712832	15312688	80	979										
DSCR3	0	genome.wustl.edu	37	chr21	38599972	38599972	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tacccactttgaagttggtgGtctccagtgtagggcaggtg	14	8	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	21	38599972	38599972	G	T	SNP	DSCR3	ENST00000309117	human	ensembl	69_37n	-1	known	missense	c.794	p.T265N	1.000	pfam_VPS26	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538	84	0	0	34	48	58.54	-	-	-	T	38599972	G	T	38599972	3	4	18	1	0	0	0	0	1	0	0	0	4806	1261	44	4	107	4	DSCR3	21	38599972	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		38599972	9529923	81	980										
KRTAP10-7	0	genome.wustl.edu	37	chr21	46020875	46020875	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	caggcctgctgcatgcccgtCtgctgcaagactgtctgctg	12	14	2	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	21	46020875	46020875	C	G	SNP	KRTAP10-7	ENST00000380102	human	ensembl	69_37n	1	known	silent	c.354	p.V118	0.137	NULL	NULL	-	no_errors	KRTAP10-7	HGNC	ENSG00000205441	120	0	0	284	83	22.62	-	-	-	G	46020875	C	G	46020875	2	3	18	1	0	0	0	0	0	0	0	1	8567	900	32	2		2	KRTAP10-7	21	46020875	Silent	SNP	C	TCGA-A2-A04T-01A-21W-A050-09	7420903	46020875	2109020	82	981										
VCX3B	0	genome.wustl.edu	37	chrX	8433540	8433540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	ctccggccaaggccaaggagGcaggaaagaggaagtcctcc	14	12	0	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	X	8433540	8433540	G	A	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	missense	c.49	p.A17T	0.000	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	264	2	0.75	9	3	25	-	-	-	A	8433540	G	A	8433540	3	1	18	1	0	0	0	0	1	0	0	0	17242	1203	42	4	51	4	VCX3B	23	8433540	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09		8433540	146837020	83	982										
P2RY10	0	genome.wustl.edu	37	chrX	78216327	78216327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	accactggcctttccagagaGccctttgcctgctctgcttc	8	16	1	1			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	X	78216327	78216327	G	T	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.310	p.A104S	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	313	0	0	576	221	27.69	-	-	-	T	78216327	G	T	78216327	3	4	18	1	0	0	0	0	1	0	0	0	11420	971	34	4	312	4	P2RY10	23	78216327	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	69782787	78216327	77054233	84	983										
CXorf61	0	genome.wustl.edu	37	chrX	115593150	115593150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tagtgcaagagcagttgaatTtgatgacatttcgccagtgt	11	6	0	4			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	X	115593150	115593150	T	G	SNP	CXorf61	ENST00000371894	human	ensembl	69_37n	-1	known	missense	c.100	p.N34H	0.000	NULL	NULL	-	no_errors	CXorf61	HGNC	ENSG00000204019	150	0	0	264	138	34.33	-	-	-	G	115593150	T	G	115593150	3	3	18	1	0	0	0	0	1	0	0	0	4147	1841	64	5	245	5	CXorf61	23	115593150	Missense_Mutation	SNP	T	TCGA-A2-A04T-01A-21W-A050-09	37376823	115593150	39677410	85	984										
HTATSF1	0	genome.wustl.edu	37	chrX	135584979	135584979	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	taaaacttttggatgaagatGaaattagaggctacaaatta	8	3	0	4			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	X	135584979	135584979	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.613	p.E205K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	124	0	0	157	19	10.8	-	-	-	A	135584979	G	A	135584979	3	1	18	1	0	0	0	0	1	0	0	0	7487	1291	45	2	631	2	HTATSF1	23	135584979	Missense_Mutation	SNP	G	TCGA-A2-A04T-01A-21W-A050-09	19991829	135584979	19685581	86	985										
MAGEA12	0	genome.wustl.edu	37	chrX	151900720	151900720	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0919540229885057	8	0.310022395330102	1.65789473684211	2.25	1.3125	1	1	0	tcagtagcaggagcctgcgcAcccaccaagcccagggcctc	11	17	1	0			TCGA-A2-A04T-01A-21W-A050-09	TCGA-A2-A04T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9ddc397-9cb7-4095-a7d2-1c1396891587	9482fe83-a4b1-424a-baf1-8b0f8e40c9b7	X	151900720	151900720	A	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.81	p.G27	0.002	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	47	0	0	97	17	14.91	-	-	-	C	151900720	A	C	151900720	2	2	18	1	0	0	0	0	0	0	0	1	9233	146	6	5		5	MAGEA12	23	151900720	Silent	SNP	A	TCGA-A2-A04T-01A-21W-A050-09	16315741	151900720	3369840	87	986										
MTOR	0	genome.wustl.edu	37	chr1	11217313	11217313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gccacaagggcatcctcccaCtcgtgcagtttctcatacca	7	16	1	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	11217313	11217313	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.4365	p.E1455	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	120	0	0	111	50	31.06	-	-	-	T	11217313	C	T	11217313	2	4	19	1	0	0	0	0	0	0	0	1	10026	564	20	4		4	MTOR	1	11217313	Silent	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		11217313	238033308	1	987										
USP1	0	genome.wustl.edu	37	chr1	62914231	62914231	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	taggagaagataaatatttcTgtgaaaactgccatcattat	7	5	2	3			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	62914231	62914231	T	A	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	missense	c.1516	p.C506S	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	142	0	0	218	46	17.42	-	-	-	A	62914231	T	A	62914231	3	1	19	1	0	0	0	0	1	0	0	0	17137	1580	55	5	1542	5	USP1	1	62914231	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	51696918	62914231	186336390	2	988										
ENSA	0	genome.wustl.edu	37	chr1	150601942	150601942	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tctcttcttcttgtttctggGacatggcgggaccgggactg	13	10	4	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	150601942	150601942	G	T	SNP	ENSA	ENST00000369009	human	ensembl	69_37n	-1	known	missense	c.5	p.S2Y	1.000	NULL	pfam_Endosulphine	-	no_errors	ENSA	HGNC	ENSG00000143420	154	0	0	251	49	16.33	-	-	-	T	150601942	G	T	150601942	3	4	19	1	0	0	0	0	1	0	0	0	5173	1174	41	2	616	2	ENSA	1	150601942	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	87687711	150601942	98648679	3	989										
KIF21B	0	genome.wustl.edu	37	chr1	200967640	200967640	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	ggctgttctccagctcgtcgAtcagcttctgcttgatttcg	10	12	3	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	200967640	200967640	A	C	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.1949	p.I650S	0.999	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	83	0	0	107	35	24.65	-	-	-	C	200967640	A	C	200967640	3	2	19	1	0	0	0	0	1	0	0	0	8341	333	12	5	3009	5	KIF21B	1	200967640	Missense_Mutation	SNP	A	TCGA-A2-A04U-01A-11D-A10Y-09	50365698	200967640	48282981	4	990										
GNPAT	0	genome.wustl.edu	37	chr1	231406515	231406515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tgtgtgtagataataaacctGctgaagaagttgtcccggcc	11	8	0	3			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	231406515	231406515	G	A	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	missense	c.1291	p.A431T	0.909	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	140	0	0	168	46	21.5	-	-	-	A	231406515	G	A	231406515	3	1	19	1	0	0	0	0	1	0	0	0	6593	1319	46	4	1329	4	GNPAT	1	231406515	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	30438875	231406515	17844106	5	991										
HNRNPU	0	genome.wustl.edu	37	chr1	245025803	245025803	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gtgtcatcgaagtgttcatcTtcttcttcaacaggtggctg	10	9	6	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	245025803	245025803	T	A	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.837	p.E279D	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	239	0	0	309	74	19.32	-	-	-	A	245025803	T	A	245025803	3	1	19	1	0	0	0	0	1	0	0	0	7324	1606	56	5	1688	5	HNRNPU	1	245025803	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	13619288	245025803	4224818	6	992										
NBAS	0	genome.wustl.edu	37	chr2	15372613	15372613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cttcagtgggtcccttggccCaccaaggtcagcactgccac	10	16	2	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	15372613	15372613	C	A	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6169	p.G2057W	0.000	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	65	0	0	84	25	22.94	-	-	-	A	15372613	C	A	15372613	3	1	19	1	0	0	0	0	1	0	0	0	10258	594	21	4	970	4	NBAS	2	15372613	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		15372613	227826760	7	993										
TCF7L1	0	genome.wustl.edu	37	chr2	85361198	85361198	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	aagccgcgggactatttcgcCgaaggtatgtgcccgctggg	15	11	0	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	85361198	85361198	C	G	SNP	TCF7L1	ENST00000282111	human	ensembl	69_37n	1	known	silent	c.309	p.A103	0.997	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L1	HGNC	ENSG00000152284	22	0	0	28	12	30	-	-	-	G	85361198	C	G	85361198	2	3	19	1	0	0	0	0	0	0	0	1	15792	639	23	3		3	TCF7L1	2	85361198	Silent	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	69988585	85361198	157838175	8	994										
NUP35	0	genome.wustl.edu	37	chr2	184022174	184022174	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gacaactctttttttcaggtTtcctcaagcatctgcttcct	5	12	4	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	184022174	184022174	T	G	SNP	NUP35	ENST00000295119	human	ensembl	69_37n	1	known	missense	c.542	p.F181C	1.000	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002	145	0	0	251	52	17.16	-	-	-	G	184022174	T	G	184022174	3	3	19	1	0	0	0	0	1	0	0	0	10836	1841	64	5	564	5	NUP35	2	184022174	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	98660976	184022174	59177199	9	995										
CCDC108	0	genome.wustl.edu	37	chr2	219894866	219894866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cgatgccatgggccgtggggCatgagaaggcctggtcttcg	17	10	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	219894866	219894866	C	A	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.1226	p.C409F	0.860	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	104	0	0	149	44	22.8	-	-	-	A	219894866	C	A	219894866	3	1	19	1	0	0	0	0	1	0	0	0	2768	710	25	4	4655	4	CCDC108	2	219894866	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	35872692	219894866	23304507	10	996										
ATP2B2	0	genome.wustl.edu	37	chr3	10417218	10417221	+	Frame_Shift_Del	DEL	GCAC	GCAC	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gaagaacttgacaaagtactGcacgtagacgggcgtgcact							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	GCAC	GCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417218	10417221	GCAC	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1312_1309	p.V437fs	1.000:1.000:1.000:1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	35	0	0	85	23	21.3	-	-	-	-	10417221	GCAC	-	10417218	7	5	19	1	0	1	0	1	0	0	0	0	1144	1328	46	0	2471	0	ATP2B2	3	10417218	Frame_Shift_Del	DEL	GCAC	TCGA-A2-A04U-01A-11D-A10Y-09		10417218	187605212	11	997	6	4								
ATP2B2	0	genome.wustl.edu	37	chr3	10417224	10417224	+	Frame_Shift_Del	DEL	A	A	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cttgacaaagtactgcacgtAgacgggcgtgcactcaggca							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417224	10417224	A	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1306	p.Y436fs	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	34	0	0	77	23	23	-	-	-	-	10417224	A	-	10417224	7	5	19	1	0	1	0	1	0	0	0	0	1144	420	15	0	2477	0	ATP2B2	3	10417224	Frame_Shift_Del	DEL	A	TCGA-A2-A04U-01A-11D-A10Y-09	6	10417224	187605206	12	998	6	4								
ATP2B2	0	genome.wustl.edu	37	chr3	10417227	10417230	+	Frame_Shift_Del	DEL	CGGG	CGGG	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gacaaagtactgcacgtagaCgggcgtgcactcaggcagcc							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	CGGG	CGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417227	10417230	CGGG	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1303_1300	p.P434fs	0.955:0.005:0.993:0.995	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	33	0	0	75	23	23.47	-	-	-	-	10417230	CGGG	-	10417227	7	5	19	1	0	1	0	1	0	0	0	0	1144	536	19	0	2480	0	ATP2B2	3	10417227	Frame_Shift_Del	DEL	CGGG	TCGA-A2-A04U-01A-11D-A10Y-09	3	10417227	187605203	13	999	6	4								
ATP2B2	0	genome.wustl.edu	37	chr3	10417234	10417235	+	Frame_Shift_Del	DEL	GC	GC	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tactgcacgtagacgggcgtGcactcaggcagccacggctt							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417234	10417235	GC	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1296_1295	p.C432fs	1.000:1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	32	0	0	74	23	23.71	-	-	-	-	10417235	GC	-	10417234	7	5	19	1	0	1	0	1	0	0	0	0	1144	1311	46	0	2487	0	ATP2B2	3	10417234	Frame_Shift_Del	DEL	GC	TCGA-A2-A04U-01A-11D-A10Y-09	7	10417234	187605196	14	1000	6	4								
MUC4	0	genome.wustl.edu	37	chr3	195513060	195513060	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cctgtggatgccgaggaaacGtcggtgacaggaagacgggt	17	8	0	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	195513060	195513060	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5391	p.D1797	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	689	0	0	515	120	18.9	-	-	-	A	195513060	G	A	195513060	2	1	19	1	0	0	0	0	0	0	0	1	10050	1136	40	1		1	MUC4	3	195513060	Silent	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	185095826	195513060	2509370	15	1001										
ZFYVE28	0	genome.wustl.edu	37	chr4	2321938	2321938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tggaagggccggaacagctcGgacatgtcttccaccttgcg	13	12	1	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	4	2321938	2321938	G	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.762	p.S254	0.923	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	97	0	0	16	40	71.43	-	-	-	A	2321938	G	A	2321938	2	1	19	1	0	0	0	0	0	0	0	1	17766	1103	39	1		1	ZFYVE28	4	2321938	Silent	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09		2321938	188832338	16	1002										
GAR1	0	genome.wustl.edu	37	chr4	110737351	110737351	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gaggcggaggtcgtggaggcTttaatcgaggtggtggaggt	21	4	0	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	4	110737351	110737351	T	G	SNP	GAR1	ENST00000226796	human	ensembl	69_37n	1	known	missense	c.31	p.F11V	0.977	NULL	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	GAR1	HGNC	ENSG00000109534	202	0	0	448	82	15.47	-	-	-	G	110737351	T	G	110737351	3	3	19	1	0	0	0	0	1	0	0	0	6290	1609	56	5	33	5	GAR1	4	110737351	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	108415413	110737351	80416925	17	1003										
PCDHGB7	0	genome.wustl.edu	37	chr5	140799111	140799111	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	taacgacaacgcaccgcgggTgctgtaccctgcgctgggtc	13	14	0	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	5	140799111	140799111	T	G	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.1685	p.V562G	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	19	0	0	1	9	90	-	-	-	G	140799111	T	G	140799111	3	3	19	1	0	0	0	0	1	0	0	0	11641	1696	59	5	1687	5	PCDHGB7	5	140799111	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09		140799111	40116149	18	1004										
BACH2	0	genome.wustl.edu	37	chr6	90660232	90660232	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cagggtgagcccccgctcccGtcctccgcgtaggaatagga	13	15	0	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	6	90660232	90660232	G	C	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1593	p.D531E	0.258	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	75	0	0	22	30	57.69	-	-	-	C	90660232	G	C	90660232	3	2	19	1	0	0	0	0	1	0	0	0	1288	1136	40	3	944	3	BACH2	6	90660232	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09		90660232	80454835	19	1005										
SEPT14	0	genome.wustl.edu	37	chr7	55929654	55929654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	actgtatctccatcagcaggTatttgtgtgggcatagccat	10	9	2	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	55929654	55929654	T	C	SNP	SEPT14	ENST00000388975	human	ensembl	69_37n	-1	known	missense	c.36	p.I12M	0.000	NULL	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	144	0	0	13	76	85.39	-	-	-	C	55929654	T	C	55929654	3	2	19	1	0	0	0	0	1	0	0	0	14151	1628	57	5	1298	5	SEPT14	7	55929654	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09		55929654	103209009	20	1006										
ABCB1	0	genome.wustl.edu	37	chr7	87145943	87145943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gagcaaatgaactgacttgcCccacggccatggcaccaaag	10	13	0	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	87145943	87145943	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2966	p.G989E	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	141	0	0	168	73	30.29	-	-	-	T	87145943	C	T	87145943	3	4	19	1	0	0	0	0	1	0	0	0	40	623	22	4	896	4	ABCB1	7	87145943	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	31216289	87145943	71992720	21	1007										
FZD1	0	genome.wustl.edu	37	chr7	90895264	90895264	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	acccggagcggcccatcatcTtcttgtccggctgttacacg	10	15	3	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	90895264	90895264	T	A	SNP	FZD1	ENST00000287934	human	ensembl	69_37n	1	known	missense	c.1069	p.F357I	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240	71	0	0	277	38	12.06	-	-	-	A	90895264	T	A	90895264	3	1	19	1	0	0	0	0	1	0	0	0	6177	1609	56	5	1071	5	FZD1	7	90895264	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	3749321	90895264	68243399	22	1008										
CPSF4	0	genome.wustl.edu	37	chr7	99045885	99045885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gatgcccgagtgctacttctActccaagttcggtaaggcgc	11	12	1	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	99045885	99045885	A	C	SNP	CPSF4	ENST00000292476	human	ensembl	69_37n	1	known	missense	c.296	p.Y99S	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917	93	0	0	151	42	21.76	-	-	-	C	99045885	A	C	99045885	3	2	19	1	0	0	0	0	1	0	0	0	3858	391	14	5	306	5	CPSF4	7	99045885	Missense_Mutation	SNP	A	TCGA-A2-A04U-01A-11D-A10Y-09	8150621	99045885	60092778	23	1009										
MOGAT3	0	genome.wustl.edu	37	chr7	100841573	100841573	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tcgtgcgcaccccccaccatGatgaccacggcctgcccgag	10	19	0	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	100841573	100841573	G	C	SNP	MOGAT3	ENST00000440203	human	ensembl	69_37n	-1	known	missense	c.567	p.I189M	0.063	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	29	0	0	50	17	25.37	-	-	-	C	100841573	G	C	100841573	3	2	19	1	0	0	0	0	1	0	0	0	9768	1280	45	2	470	2	MOGAT3	7	100841573	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	1795688	100841573	58297090	24	1010										
VLDLR	0	genome.wustl.edu	37	chr9	2643403	2643403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gtccctggagcagtgtggccGtcagccagtcatacacacca	11	14	2	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	2643403	2643403	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.692	p.R231H	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	39	0	0	140	44	23.91	-	-	-	A	2643403	G	A	2643403	3	1	19	1	0	0	0	0	1	0	0	0	17271	1145	40	1	710	1	VLDLR	9	2643403	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09		2643403	138570028	25	1011										
CREB3	0	genome.wustl.edu	37	chr9	35732815	35732815	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	accaagacctgctggccttcCtgctagaggaaagtggagat	12	10	0	3			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	35732815	35732815	C	A	SNP	CREB3	ENST00000353704	human	ensembl	69_37n	1	known	missense	c.46	p.L16M	0.999	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175	136	0	0	65	88	57.52	-	-	-	A	35732815	C	A	35732815	3	1	19	1	0	0	0	0	1	0	0	0	3885	680	24	4	48	4	CREB3	9	35732815	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	33089412	35732815	105480616	26	1012										
FRMPD1	0	genome.wustl.edu	37	chr9	37708487	37708487	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	ctttcctgggaacgagcagtCgatattctcaggtactaaat	9	9	1	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	37708487	37708487	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	silent	c.351	p.V117	0.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	76	0	0	72	33	31.43	-	-	-	T	37708487	C	T	37708487	2	4	19	1	0	0	0	0	0	0	0	1	6106	871	31	1		1	FRMPD1	9	37708487	Silent	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	1975672	37708487	103504944	27	1013										
STRBP	0	genome.wustl.edu	37	chr9	125898790	125898790	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tgaggatagggccctgagttCttacctataagagaaaggga	13	6	1	3			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	125898790	125898790	C	T	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	missense	c.1502	p.R501K	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	204	0	0	232	59	20.27	-	-	-	T	125898790	C	T	125898790	3	4	19	1	0	0	0	0	1	0	0	0	15418	913	32	2	536	2	STRBP	9	125898790	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	88190303	125898790	15314641	28	1014										
LMX1B	0	genome.wustl.edu	37	chr9	129458599	129458599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	actccatcttccatgacatcGacagcgatacctccttaacc	4	16	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	129458599	129458599	G	A	SNP	LMX1B	ENST00000355497	human	ensembl	69_37n	1	known	missense	c.1090	p.D364N	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1B	HGNC	ENSG00000136944	62	0	0	59	17	22.37	-	-	-	A	129458599	G	A	129458599	3	1	19	1	0	0	0	0	1	0	0	0	8918	1058	37	1	1141	1	LMX1B	9	129458599	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	3559809	129458599	11754832	29	1015										
EHMT1	0	genome.wustl.edu	37	chr9	140676797	140676797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	ccagaataagcgctctccacTgcacgccgcggcagaggctg	12	15	1	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	140676797	140676797	T	G	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.2330	p.L777R	0.969	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	30	0	0	16	13	44.83	-	-	-	G	140676797	T	G	140676797	3	3	19	1	0	0	0	0	1	0	0	0	5018	1580	55	5	2388	5	EHMT1	9	140676797	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	11218198	140676797	536634	30	1016										
FNBP4	0	genome.wustl.edu	37	chr11	47753019	47753019	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	agtctcatctctattttcttGtgcttggctttcttcttctt	5	10	6	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	11	47753019	47753019	G	C	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.1915	p.Q639E	0.586	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	261	0	0	366	91	19.91	-	-	-	C	47753019	G	C	47753019	3	2	19	1	0	0	0	0	1	0	0	0	6013	1386	48	4	1162	4	FNBP4	11	47753019	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09		47753019	87253497	31	1017										
CASP1	0	genome.wustl.edu	37	chr11	104905093	104905093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cacgttttactttctccatcTcttccttgttcagcaccctt	3	15	3	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	11	104905093	104905093	T	C	SNP	CASP1	ENST00000436863	human	ensembl	69_37n	-1	known	missense	c.116	p.E39G	1.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752	561	1	0.18	213	107	33.44	-	-	-	C	104905093	T	C	104905093	3	2	19	1	0	0	0	0	1	0	0	0	2693	1551	54	5	1130	5	CASP1	11	104905093	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	57152074	104905093	30101423	32	1018										
SLC2A13	0	genome.wustl.edu	37	chr12	40422247	40422247	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	aataagccatcgagggctttCaggcaaaaagagaaagccaa	10	8	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	12	40422247	40422247	C	G	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	missense	c.781	p.E261Q	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	78	0	0	58	11	15.94	-	-	-	G	40422247	C	G	40422247	3	3	19	1	0	0	0	0	1	0	0	0	14631	835	29	2	1197	2	SLC2A13	12	40422247	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		40422247	93429648	33	1019										
PRDM4	0	genome.wustl.edu	37	chr12	108145695	108145695	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tcgtaagctcctctgccattCcatctgtcgaaattgggctg	9	12	2	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	12	108145695	108145695	C	G	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	missense	c.623	p.G208A	1.000	pirsf_Znf_PRDM4	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	159	0	0	173	25	12.63	-	-	-	G	108145695	C	G	108145695	3	3	19	1	0	0	0	0	1	0	0	0	12540	855	30	2	1814	2	PRDM4	12	108145695	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	67723448	108145695	25706200	34	1020										
SYT16	0	genome.wustl.edu	37	chr14	62547769	62547769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	taagaaacacaggggcaggaCgaacatacagagagggccca	13	9	0	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	14	62547769	62547769	C	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	missense	c.1211	p.T404M	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	81	0	0	3	46	93.88	-	-	-	T	62547769	C	T	62547769	3	4	19	1	0	0	0	0	1	0	0	0	15564	536	19	1	1225	1	SYT16	14	62547769	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		62547769	44801771	35	1021										
BDKRB1	0	genome.wustl.edu	37	chr14	96730708	96730708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	ccacatcctggcctccctgcGaacgcgggaggaggtcagca	13	15	1	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	14	96730708	96730708	G	A	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	1	known	missense	c.689	p.R230Q	0.000	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	112	0	0	14	106	88.33	-	-	-	A	96730708	G	A	96730708	3	1	19	1	0	0	0	0	1	0	0	0	1396	1058	37	1	691	1	BDKRB1	14	96730708	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	34182939	96730708	10618832	36	1022										
FMN1	0	genome.wustl.edu	37	chr15	33261324	33261324	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cttctgctgatttgatgccaTgccctccattggctggagtg	11	11	1	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	33261324	33261324	T	C	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.1909	p.M637V	0.001	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	255	0	0	47	93	66.43	-	-	-	C	33261324	T	C	33261324	3	2	19	1	0	0	0	0	1	0	0	0	5995	1464	51	5	1737	5	FMN1	15	33261324	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09		33261324	69270068	37	1023										
CILP	0	genome.wustl.edu	37	chr15	65490491	65490491	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	ttttcaaatttgaaatcaccTtcctcctcccacagccctgt	3	15	2	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	65490491	65490491	T	A	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.2133	p.E711D	0.942	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	138	0	0	20	115	85.19	-	-	-	A	65490491	T	A	65490491	3	1	19	1	0	0	0	0	1	0	0	0	3458	1606	56	5	1425	5	CILP	15	65490491	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	32229167	65490491	37040901	38	1024										
CHD2	0	genome.wustl.edu	37	chr15	93510696	93510696	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tcccttcctgctaaagtggaAcagattctcagggtggagat	11	9	1	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	93510696	93510696	A	G	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	silent	c.2142	p.E714	0.954	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	113	0	0	11	27	69.23	-	-	-	G	93510696	A	G	93510696	2	3	19	1	0	0	0	0	0	0	0	1	3354	40	2	5		5	CHD2	15	93510696	Silent	SNP	A	TCGA-A2-A04U-01A-11D-A10Y-09	28020205	93510696	9020696	39	1025										
ABCC12	0	genome.wustl.edu	37	chr16	48172233	48172233	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	attgtctgaactcgcttgtcTgtcaccaaaattgctgacct	7	11	3	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	16	48172233	48172233	T	C	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	silent	c.885	p.T295	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	187	0	0	164	78	32.23	-	-	-	C	48172233	T	C	48172233	2	2	19	1	0	0	0	0	0	0	0	1	52	1567	55	5		5	ABCC12	16	48172233	Silent	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09		48172233	42182520	40	1026										
CNOT1	0	genome.wustl.edu	37	chr16	58564183	58564183	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tgcataggtttggtgagttcCacatttctaaggaaaggcgc	12	7	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	16	58564183	58564183	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	silent	c.6246	p.V2082	1.000	pfam_CCR4-Not_Not1_C	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	76	0	0	11	24	68.57	-	-	-	T	58564183	C	T	58564183	2	4	19	1	0	0	0	0	0	0	0	1	3647	581	21	4		4	CNOT1	16	58564183	Silent	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	10391950	58564183	31790570	41	1027										
TP53	0	genome.wustl.edu	37	chr17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gcaagaagcccagacggaaaCcgtagctgccctggtaggtt							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	7579364	7579364	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323	p.G108fs	0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0	13	15	51.72	-	-	-	-	7579364	C	-	7579364	7	5	19	1	0	1	0	1	0	0	0	0	16477	507	18	0	979	0	TP53	17	7579364	Frame_Shift_Del	DEL	C	TCGA-A2-A04U-01A-11D-A10Y-09		7579364	73615846	42	1028										
MYO15A	0	genome.wustl.edu	37	chr17	18022644	18022644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	caaactccccttcccgtcggGtgccgagatcctgcggcctg	11	17	0	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	18022644	18022644	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.530	p.G177D	0.824	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	9	0	0	1	4	80	-	-	-	A	18022644	G	A	18022644	3	1	19	1	0	0	0	0	1	0	0	0	10135	1261	44	4	532	4	MYO15A	17	18022644	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	10443280	18022644	63172566	43	1029										
BZRAP1	0	genome.wustl.edu	37	chr17	56403701	56403701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tcgggccctctcctccaggcGcttggcaatgaccgccagct	11	17	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	56403701	56403701	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	missense	c.523	p.R175C	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	199	0	0	51	271	83.9	-	-	-	A	56403701	G	A	56403701	3	1	19	1	0	0	0	0	1	0	0	0	1586	1087	38	1	5166	1	BZRAP1	17	56403701	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	38381057	56403701	24791509	44	1030										
LAMA3	0	genome.wustl.edu	37	chr18	21530014	21530014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tcactctgtattgttggggcCagaatttaagcttgttttca	9	7	3	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	18	21530014	21530014	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.9533	p.P3178L	0.125	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	327	0	0	773	153	16.52	-	-	-	T	21530014	C	T	21530014	3	4	19	1	0	0	0	0	1	0	0	0	8661	594	21	4	9994	4	LAMA3	18	21530014	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		21530014	56547234	45	1031										
TCEB3B	0	genome.wustl.edu	37	chr18	44560555	44560555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	cacctcagagagggagctcaCggacgttctgtccaaatgag	12	11	3	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	18	44560555	44560555	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.1081	p.V361M	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	89	0	0	91	29	24.17	-	-	-	T	44560555	C	T	44560555	3	4	19	1	0	0	0	0	1	0	0	0	15777	536	19	1	1184	1	TCEB3B	18	44560555	Missense_Mutation	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09	23030541	44560555	33516693	46	1032										
POLD1	0	genome.wustl.edu	37	chr19	50921181	50921181	+	Frame_Shift_Del	DEL	C	C	-													0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	agctcctgcggcgcttcggaCcccctggacctgaggcctgg							TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	19	50921181	50921181	C	-	DEL	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	frame_shift_del	c.3301	p.P1102fs	0.998	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	30	0	0	15	12	44.44	-	-	-	-	50921181	C	-	50921181	7	5	19	1	0	1	0	1	0	0	0	0	12264	507	18	0	3403	0	POLD1	19	50921181	Frame_Shift_Del	DEL	C	TCGA-A2-A04U-01A-11D-A10Y-09		50921181	8207802	47	1033										
ADAMTS5	0	genome.wustl.edu	37	chr21	28315764	28315764	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tggaccagggcttagatgcaTcaatgctggtaaggatggaa	14	6	1	1			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	21	28315764	28315764	T	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1340	p.D447V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	160	0	0	382	100	20.75	-	-	-	A	28315764	T	A	28315764	3	1	19	1	0	0	0	0	1	0	0	0	269	1435	50	5	1476	5	ADAMTS5	21	28315764	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09		28315764	19814131	48	1034										
TNRC6B	0	genome.wustl.edu	37	chr22	40661106	40661106	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	gaggaatgtgagtggtcaggAtagaattggacctggctctg	16	5	2	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	22	40661106	40661106	A	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.872	p.D291V	0.983	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	122	0	0	155	80	34.04	-	-	-	T	40661106	A	T	40661106	3	4	19	1	0	0	0	0	1	0	0	0	16436	333	12	5	1011	5	TNRC6B	22	40661106	Missense_Mutation	SNP	A	TCGA-A2-A04U-01A-11D-A10Y-09		40661106	10643460	49	1035										
MXRA5	0	genome.wustl.edu	37	chrX	3261749	3261749	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	acggaagccagggatcggaaCgtgcagtggacctcgctggg	17	10	0	0			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	3261749	3261749	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.126	p.T42	0.311	smart_LRR-contain_N	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	54	0	0	129	21	14	-	-	-	T	3261749	C	T	3261749	2	4	19	1	0	0	0	0	0	0	0	1	10075	523	19	1		1	MXRA5	23	3261749	Silent	SNP	C	TCGA-A2-A04U-01A-11D-A10Y-09		3261749	152008811	50	1036										
MAGEB6	0	genome.wustl.edu	37	chrX	26213143	26213143	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	acccacatctgtatgaagacGctttgatagatgaggtagag	11	7	1	6			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	26213143	26213143	G	C	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.1180	p.A394P	0.008	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	106	0	0	63	41	39.05	-	-	-	C	26213143	G	C	26213143	3	2	19	1	0	0	0	0	1	0	0	0	9250	1087	38	3	1182	3	MAGEB6	23	26213143	Missense_Mutation	SNP	G	TCGA-A2-A04U-01A-11D-A10Y-09	22951394	26213143	129057417	51	1037										
CXorf22	0	genome.wustl.edu	37	chrX	35984770	35984770	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	tggtttagtggcagaagaagAtttgcaatctttgtcggtaa	12	4	1	3			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	35984770	35984770	A	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.1499	p.D500V	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	217	0	0	109	94	46.08	-	-	-	T	35984770	A	T	35984770	3	4	19	1	0	0	0	0	1	0	0	0	4133	333	12	5	1533	5	CXorf22	23	35984770	Missense_Mutation	SNP	A	TCGA-A2-A04U-01A-11D-A10Y-09	9771627	35984770	119285790	52	1038										
GPR174	0	genome.wustl.edu	37	chrX	78426996	78426996	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.06	3	0.876436643075864	1.03629032258065	2.36866359447005	0.487666034155598	1	1	0	agtgatgatacctctggcaaTaggaccaaatgctttgtgga	11	7	1	2			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	78426996	78426996	T	A	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	1	known	missense	c.492	p.N164K	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	177	0	0	105	79	42.93	-	-	-	A	78426996	T	A	78426996	3	1	19	1	0	0	0	0	1	0	0	0	6722	1403	49	5	494	5	GPR174	23	78426996	Missense_Mutation	SNP	T	TCGA-A2-A04U-01A-11D-A10Y-09	42442226	78426996	76843564	53	1039										
KHDRBS1	0	genome.wustl.edu	37	chr1	32495940	32495942	+	In_Frame_Del	DEL	GAG	GAG	-													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	gagactcaaaaaaggatgatGaggagaattacttggattta							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	32495940	32495942	GAG	-	DEL	KHDRBS1	ENST00000327300	human	ensembl	69_37n	1	known	in_frame_del	c.424_426	p.E143in_frame_del	1.000:0.998:0.666	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	64	0	0	38	15	28.3	-	-	-	-	32495942	GAG	-	32495940	7	5	20	1	0	1	0	1	0	0	0	0	8198	1291	45	0	430	0	KHDRBS1	1	32495940	In_Frame_Del	DEL	GAG	TCGA-A2-A04V-01A-21W-A050-09		32495940	216754681	1	1040										
KIAA0319L	0	genome.wustl.edu	37	chr1	35936468	35936468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	aaggaggcaaattcaccttcGatagtttgaggatctgggaa	12	6	2	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	35936468	35936468	G	A	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.1109	p.S370L	1.000	pfam_PKD/REJ-like,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	151	0	0	121	17	12.32	-	-	-	A	35936468	G	A	35936468	3	1	20	1	0	0	0	0	1	0	0	0	8221	1059	37	1	2104	1	KIAA0319L	1	35936468	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09	3440528	35936468	213314153	2	1041										
LRIG2	0	genome.wustl.edu	37	chr1	113616247	113616248	+	Frame_Shift_Ins	INS	-	-	C													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	gggcgctgtcgggcttgctgINSccccccgacaccgctatcct							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	113616247	113616248	-	C	INS	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	frame_shift_ins	c.219_220	p.D75fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	13	0	0	13	3	18.75	-	-	-	C	113616248	-	C	113616247	7	5	20	1	0	1	1	0	0	0	0	0	9011	1306	46	0	221	0	LRIG2	1	113616247	Frame_Shift_Ins	INS	-	TCGA-A2-A04V-01A-21W-A050-09	77679779	113616247	135634374	3	1042										
SV2A	0	genome.wustl.edu	37	chr1	149879682	149879682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tacgcgctccccggggaacaCtttggtgcgggatgcgtagt	15	11	0	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	149879682	149879682	C	T	SNP	SV2A	ENST00000369146	human	ensembl	69_37n	-1	known	missense	c.1456	p.V486M	0.992	pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2A	HGNC	ENSG00000159164	196	0	0	107	77	41.85	-	-	-	T	149879682	C	T	149879682	3	4	20	1	0	0	0	0	1	0	0	0	15508	565	20	4	792	4	SV2A	1	149879682	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09	36263435	149879682	99370939	4	1043										
UBAP2L	0	genome.wustl.edu	37	chr1	154227320	154227320	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tttttttaccagaatggcttCagttctgtgcaggccacgca	9	10	2	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	154227320	154227320	C	T	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	silent	c.1863	p.F621	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	370	3	0.8	132	89	40.27	-	-	-	T	154227320	C	T	154227320	2	4	20	1	0	0	0	0	0	0	0	1	16935	825	29	2		2	UBAP2L	1	154227320	Silent	SNP	C	TCGA-A2-A04V-01A-21W-A050-09	4347638	154227320	95023301	5	1044										
PIK3CA	0	genome.wustl.edu	37	chr3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tttatgtaattttattaaagGttttgctatcggcatgccag	8	5	0	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	3	178917478	178917478	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.353	p.G118D	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	97	0	0	43	32	42.67	-	-	-	A	178917478	G	A	178917478	3	1	20	1	0	0	0	0	1	0	0	0	11987	1275	44	4	359	4	PIK3CA	3	178917478	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09		178917478	19104952	6	1045										
TAPT1	0	genome.wustl.edu	37	chr4	16193020	16193020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	atgatgtagagcttgatgacGgactgcccccttatcaggtg	12	9	1	4			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	4	16193020	16193020	G	A	SNP	TAPT1	ENST00000513782	human	ensembl	69_37n	-1	known	missense	c.88	p.R30C	0.804	pfam_Membrane_Tatp1/CMV_rcpt	pfam_Membrane_Tatp1/CMV_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAPT1	HGNC	ENSG00000169762	65	0	0	43	22	33.33	-	-	-	A	16193020	G	A	16193020	3	1	20	1	0	0	0	0	1	0	0	0	15646	1103	39	1	1171	1	TAPT1	4	16193020	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09		16193020	174961256	7	1046										
HEATR7B2	0	genome.wustl.edu	37	chr5	41058282	41058282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	agcaagctcaccgtgggcccGtgggccttaacgatgctcaa	12	13	2	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	5	41058282	41058282	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.639	p.H213	0.930	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	143	0	0	68	47	40.87	-	-	-	A	41058282	G	A	41058282	2	1	20	1	0	0	0	0	0	0	0	1	7086	1136	40	1		1	HEATR7B2	5	41058282	Silent	SNP	G	TCGA-A2-A04V-01A-21W-A050-09		41058282	139856978	8	1047										
ACTBL2	0	genome.wustl.edu	37	chr5	56777892	56777892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ggctacgtagcacagcttctCtttgacatctcgcacaatct	7	13	3	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	5	56777892	56777892	C	G	SNP	ACTBL2	ENST00000423391	human	ensembl	69_37n	-1	known	missense	c.643	p.E215Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTBL2	HGNC	ENSG00000169067	72	0	0	44	20	31.25	-	-	-	G	56777892	C	G	56777892	3	3	20	1	0	0	0	0	1	0	0	0	194	922	32	2	491	2	ACTBL2	5	56777892	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09	15719610	56777892	124137368	9	1048										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27805932	27805932	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ttgccagccagttccaggatCtcggcggttaggtactccaa	11	12	1	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	6	27805932	27805932	C	T	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	silent	c.186	p.E62	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	128	0	0	127	31	19.62	-	-	-	T	27805932	C	T	27805932	2	4	20	1	0	0	0	0	0	0	0	1	7188	912	32	2		2	HIST1H2AK	6	27805932	Silent	SNP	C	TCGA-A2-A04V-01A-21W-A050-09		27805932	143309135	10	1049										
PLEKHA2	0	genome.wustl.edu	37	chr8	38809720	38809721	+	Frame_Shift_Ins	INS	-	-	C													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ggaagggagtgagcccgggtINScccacaccatccttcgaagg							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	8	38809720	38809721	-	C	INS	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	frame_shift_ins	c.523_524	p.H176fs	0.486:0.798	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	212	0	0	270	30	10	-	-	-	C	38809721	-	C	38809720	7	5	20	1	0	1	1	0	0	0	0	0	12130	1667	58	0	545	0	PLEKHA2	8	38809720	Frame_Shift_Ins	INS	-	TCGA-A2-A04V-01A-21W-A050-09		38809720	107554302	11	1050										
SFRP1	0	genome.wustl.edu	37	chr8	41166156	41166156	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ttggggcttggaggcttcggTggcattgggcggcgtcatgg	20	7	1	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	8	41166156	41166156	T	G	SNP	SFRP1	ENST00000220772	human	ensembl	69_37n	-1	known	missense	c.523	p.T175P	1.000	superfamily_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332	70	0	0	34	6	14.63	-	-	-	G	41166156	T	G	41166156	3	3	20	1	0	0	0	0	1	0	0	0	14249	1696	59	5	433	5	SFRP1	8	41166156	Missense_Mutation	SNP	T	TCGA-A2-A04V-01A-21W-A050-09	2356436	41166156	105197866	12	1051										
TRMT12	0	genome.wustl.edu	37	chr8	125463552	125463552	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tggtcagccgagttggaggcTgatttgccccgatcatggca	14	10	2	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	8	125463552	125463552	T	C	SNP	TRMT12	ENST00000328599	human	ensembl	69_37n	1	known	silent	c.384	p.A128	0.856	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665	93	0	0	69	13	15.85	-	-	-	C	125463552	T	C	125463552	2	2	20	1	0	0	0	0	0	0	0	1	16660	1567	55	5		5	TRMT12	8	125463552	Silent	SNP	T	TCGA-A2-A04V-01A-21W-A050-09	84297396	125463552	20900470	13	1052										
FANCC	0	genome.wustl.edu	37	chr9	98011555	98011555	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ctgataatcacaagaaagatCtactgaatcttgagccatct	6	9	4	5			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	9	98011555	98011555	C	A	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	missense	c.19	p.D7Y	0.005	pfam_Fanconi,pirsf_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	102	0	0	29	21	41.18	-	-	-	A	98011555	C	A	98011555	3	1	20	1	0	0	0	0	1	0	0	0	5710	913	32	2	1713	2	FANCC	9	98011555	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09		98011555	43201876	14	1053										
MRGPRX3	0	genome.wustl.edu	37	chr11	18158850	18158850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	cctgagcttcacggggctgaCgtgcatcgtttcccttgtcg	12	13	1	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	18158850	18158850	C	T	SNP	MRGPRX3	ENST00000396275	human	ensembl	69_37n	1	known	missense	c.101	p.T34M	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826	172	0	0	59	38	39.18	-	-	-	T	18158850	C	T	18158850	3	4	20	1	0	0	0	0	1	0	0	0	9840	536	19	1	103	1	MRGPRX3	11	18158850	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09		18158850	116847666	15	1054										
CAT	0	genome.wustl.edu	37	chr11	34490057	34490058	+	RNA	INS	-	-	A													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tacttgacttaagagaacttINSaaaaaaaaaaaaataaacta							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	34490057	34490058	-	A	INS	CAT	ENST00000525707	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691	60	0	0	31	4	11.43	-	-	-	A	34490058	-	A	34490057	6	5	20	0	1	1	1	0	0	0	0	0	2711	1769	61	0		0	CAT	11	34490057	RNA	INS	-	TCGA-A2-A04V-01A-21W-A050-09	16331207	34490057	100516459	16	1055										
OR5L1	0	genome.wustl.edu	37	chr11	55579499	55579499	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tgatctacctcctgtcttaaGtcttgcttgctctgatatca	6	11	5	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	55579499	55579499	G	T	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.557	p.S186I	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	145	0	0	60	35	36.84	-	-	-	T	55579499	G	T	55579499	3	4	20	1	0	0	0	0	1	0	0	0	11243	1029	36	4	559	4	OR5L1	11	55579499	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09	21089442	55579499	79427017	17	1056										
EML3	0	genome.wustl.edu	37	chr11	62371661	62371661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	atctctctggtctctgtgtcCaaaaccaaccacctggaagg	8	13	3	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	62371661	62371661	C	T	SNP	EML3	ENST00000394776	human	ensembl	69_37n	-1	novel	missense	c.1978	p.G660R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EML3	HGNC	ENSG00000149499	34	0	0	16	12	42.86	-	-	-	T	62371661	C	T	62371661	3	4	20	1	0	0	0	0	1	0	0	0	5135	593	21	4	719	4	EML3	11	62371661	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09	6792162	62371661	72634855	18	1057										
ODZ4	0	genome.wustl.edu	37	chr11	78498080	78498080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	agccatcctcgcagcggcagGtgccccctacgcacacgcca	10	19	0	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	78498080	78498080	G	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.2228	p.T743N	1.000	pfam_EGF_extracell,smart_EGF-like	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	40	0	0	17	11	39.29	-	-	-	T	78498080	G	T	78498080	3	4	20	1	0	0	0	0	1	0	0	0	10910	1261	44	4	6157	4	ODZ4	11	78498080	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09	16126419	78498080	56508436	19	1058										
OR5AU1	0	genome.wustl.edu	37	chr14	21623512	21623513	+	Frame_Shift_Del	DEL	CG	CG	-													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	atcacagaagaagtgagtgaCgacatgagcaccgcagaatt							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	14	21623512	21623513	CG	-	DEL	OR5AU1	ENST00000304418	human	ensembl	69_37n	-1	known	frame_shift_del	c.673_672	p.V225fs	0.257:0.154	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	88	0	0	88	40	31.25	-	-	-	-	21623513	CG	-	21623512	7	5	20	1	0	1	0	1	0	0	0	0	11220	536	19	0	418	0	OR5AU1	14	21623512	Frame_Shift_Del	DEL	CG	TCGA-A2-A04V-01A-21W-A050-09		21623512	85726028	20	1059										
SPTB	0	genome.wustl.edu	37	chr14	65266520	65266520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	ggcctgcagctgctgctggaCgcccgtcagcgagttggcaa	15	13	1	0			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	14	65266520	65266520	C	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.1009	p.V337I	0.995	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	91	0	0	34	20	37.04	-	-	-	T	65266520	C	T	65266520	3	4	20	1	0	0	0	0	1	0	0	0	15209	536	19	1	6158	1	SPTB	14	65266520	Missense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09	43643008	65266520	42083020	21	1060										
CHD9	0	genome.wustl.edu	37	chr16	53190227	53190227	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	aacagttaaatcaatttgatTcaataaaatttcaccatgtt	3	6	3	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	16	53190227	53190227	T	G	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.226	p.S76A	0.982	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	140	0	0	16	47	74.6	-	-	-	G	53190227	T	G	53190227	3	3	20	1	0	0	0	0	1	0	0	0	3361	1783	62	5	228	5	CHD9	16	53190227	Missense_Mutation	SNP	T	TCGA-A2-A04V-01A-21W-A050-09		53190227	37164526	22	1061										
ZDHHC1	0	genome.wustl.edu	37	chr16	67432541	67432541	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	acaggaggcccagaaggatgAgcagggcggccagggccagg	19	10	0	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	16	67432541	67432541	A	C	SNP	ZDHHC1	ENST00000348579	human	ensembl	69_37n	-1	known	missense	c.749	p.L250R	0.998	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714	77	0	0	3	7	70	-	-	-	C	67432541	A	C	67432541	3	2	20	1	0	0	0	0	1	0	0	0	17696	304	11	5	728	5	ZDHHC1	16	67432541	Missense_Mutation	SNP	A	TCGA-A2-A04V-01A-21W-A050-09	14242314	67432541	22922212	23	1062										
GPS2	0	genome.wustl.edu	37	chr17	7217849	7217850	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	acattctctcttccatctccINStttttcttccttctctcctg							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	17	7217849	7217850	-	T	INS	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_ins	c.162_161	p.E55fs	1.000:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	114	0	0	41	43	51.19	-	-	-	T	7217850	-	T	7217849	7	5	20	1	0	1	1	0	0	0	0	0	6784	680	24	0	857	0	GPS2	17	7217849	Frame_Shift_Ins	INS	-	TCGA-A2-A04V-01A-21W-A050-09		7217849	73977361	24	1063										
MIF4GD	0	genome.wustl.edu	37	chr17	73264205	73264206	+	Frame_Shift_Del	DEL	AC	AC	-													0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	gcgtcctgcttccttgctgaAcacacagtcctgcagagaat							TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	17	73264205	73264206	AC	-	DEL	MIF4GD	ENST00000577542	human	ensembl	69_37n	-1	known	frame_shift_del	c.274_273	p.F92fs	1.000:0.995	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	-	no_errors	MIF4GD	HGNC	ENSG00000125457	43	0	0	33	28	44.44	-	-	-	-	73264206	AC	-	73264205	7	5	20	1	0	1	0	1	0	0	0	0	9655	43	2	0	533	0	MIF4GD	17	73264205	Frame_Shift_Del	DEL	AC	TCGA-A2-A04V-01A-21W-A050-09	66046356	73264205	7931005	25	1064										
TMIGD2	0	genome.wustl.edu	37	chr19	4294613	4294613	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	cagctgcggcggccccagaaCcaggcaccccacacgatcgc	11	19	0	1			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	19	4294613	4294613	C	T	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	nonsense	c.513	p.W171*	0.007	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	74	0	0	24	9	26.47	-	-	-	T	4294613	C	T	4294613	4	4	20	1	0	0	0	0	0	1	0	0	16326	508	18	4	343	4	TMIGD2	19	4294613	Nonsense_Mutation	SNP	C	TCGA-A2-A04V-01A-21W-A050-09		4294613	54834370	26	1065										
CPAMD8	0	genome.wustl.edu	37	chr19	17131150	17131150	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	caacggcttaccttgagtttGattgtccctttatctaaaaa	6	9	1	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	19	17131150	17131150	G	C	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	nonsense	c.431	p.S144*	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	96	0	0	56	27	32.53	-	-	-	C	17131150	G	C	17131150	4	2	20	1	0	0	0	0	0	1	0	0	3825	1280	45	2	5559	2	CPAMD8	19	17131150	Nonsense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09	12836537	17131150	41997833	27	1066										
GRIK5	0	genome.wustl.edu	37	chr19	42566998	42566998	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	acacaacccctttgggtaagAtctgacacactgcgtgggaa	10	11	1	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	19	42566998	42566998	A	T	SNP	GRIK5	ENST00000301218	human	ensembl	69_37n	-1	known	missense	c.254	p.I85N	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737	89	0	0	38	30	44.12	-	-	-	T	42566998	A	T	42566998	3	4	20	1	0	0	0	0	1	0	0	0	6828	333	12	5	2756	5	GRIK5	19	42566998	Missense_Mutation	SNP	A	TCGA-A2-A04V-01A-21W-A050-09	25435848	42566998	16561985	28	1067										
ZXDA	0	genome.wustl.edu	37	chrX	57935544	57935544	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tgactccgcaggtgaattttCagcctacaagccttgtcata	8	11	2	2			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	X	57935544	57935544	C	A	SNP	ZXDA	ENST00000358697	human	ensembl	69_37n	-1	known	silent	c.1311	p.L437	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205	139	0	0	84	59	41.26	-	-	-	A	57935544	C	A	57935544	2	1	20	1	0	0	0	0	0	0	0	1	18341	813	29	2		2	ZXDA	23	57935544	Silent	SNP	C	TCGA-A2-A04V-01A-21W-A050-09		57935544	97335016	29	1068										
DRP2	0	genome.wustl.edu	37	chrX	100497359	100497359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.338066988586846	2.09808102345416	7.34328358208955	1.22388059701493	1	1	0	tgaaagatggagtaaagttgGtgaatgatctggcccaccaa	12	6	1	4			TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	X	100497359	100497359	G	A	SNP	DRP2	ENST00000395209	human	ensembl	69_37n	1	known	missense	c.874	p.V292M	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385	102	0	0	80	16	16.67	-	-	-	A	100497359	G	A	100497359	3	1	20	1	0	0	0	0	1	0	0	0	4799	1261	44	4	896	4	DRP2	23	100497359	Missense_Mutation	SNP	G	TCGA-A2-A04V-01A-21W-A050-09	42561815	100497359	54773201	30	1069										
THBS3	0	genome.wustl.edu	37	chr1	155167681	155167681	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ccttacataccaactgccaaGccagggtcactgttcatggt	8	13	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	155167681	155167681	G	C	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	silent	c.2292	p.G764	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	218	0	0	126	21	14.29	-	-	-	C	155167681	G	C	155167681	2	2	21	1	0	0	0	0	0	0	0	1	15950	958	34	4		4	THBS3	1	155167681	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		155167681	94082940	1	1070										
ABL2	0	genome.wustl.edu	37	chr1	179095520	179095520	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agggagtcttaccttgccatCtgcagtggtattgatcctgt	11	9	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	179095520	179095520	C	A	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.679	p.D227Y	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	78	0	0	37	6	13.95	-	-	-	A	179095520	C	A	179095520	3	1	21	1	0	0	0	0	1	0	0	0	93	913	32	2	2950	2	ABL2	1	179095520	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	23927839	179095520	70155101	2	1071										
CR1	0	genome.wustl.edu	37	chr1	207793269	207793269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttatgaatggaatctcgaagGagttagaaatgaaaaaagta	10	2	1	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	207793269	207793269	G	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.7111	p.E2371K	0.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	163	0	0	88	12	12	-	-	-	A	207793269	G	A	207793269	3	1	21	1	0	0	0	0	1	0	0	0	3870	1175	41	2	7281	2	CR1	1	207793269	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	28697749	207793269	41457352	3	1072										
USH2A	0	genome.wustl.edu	37	chr1	216246562	216246562	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gcatccatccagattgactcTgacagcaccgctggacacag	9	14	1	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	216246562	216246562	T	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.5653	p.R1885G	1.000	superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	91	0	0	68	12	15	-	-	-	C	216246562	T	C	216246562	3	2	21	1	0	0	0	0	1	0	0	0	17133	1588	55	5	10135	5	USH2A	1	216246562	Missense_Mutation	SNP	T	TCGA-A2-A04W-01A-31D-A10Y-09	8453293	216246562	33004059	4	1073										
USH2A	0	genome.wustl.edu	37	chr1	216498908	216498908	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tgtgattgggcatgcaatctGagaagatctccagagaagac	12	7	2	5			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	216498908	216498908	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.882	p.L294	0.000	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	66	0	0	28	6	17.65	-	-	-	A	216498908	G	A	216498908	2	1	21	1	0	0	0	0	0	0	0	1	17133	1277	45	2		2	USH2A	1	216498908	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	252346	216498908	32751713	5	1074										
RYR2	0	genome.wustl.edu	37	chr1	237897015	237897015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ctttccccagcaaactggagGaagattttttatatatggcc	8	9	0	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	1	237897015	237897015	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.11044	p.E3682K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	284	0	0	160	20	11.11	-	-	-	A	237897015	G	A	237897015	3	1	21	1	0	0	0	0	1	0	0	0	13855	1175	41	2	11364	2	RYR2	1	237897015	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	21398107	237897015	11353606	6	1075										
NBAS	0	genome.wustl.edu	37	chr2	15374758	15374758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	actgccacctctagcagctgCtgaatcattgctagaggctg	10	12	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	15374758	15374758	C	T	SNP	NBAS	ENST00000442506	human	ensembl	69_37n	-1	novel	missense	c.3200	p.S1067N	1.000	NULL	pfam_Sec39	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBAS	HGNC	ENSG00000151779	127	0	0	55	8	12.7	-	-	-	T	15374758	C	T	15374758	3	4	21	1	0	0	0	0	1	0	0	0	10258	796	28	4	1086	4	NBAS	2	15374758	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		15374758	227824615	7	1076										
CAD	0	genome.wustl.edu	37	chr2	27449820	27449820	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	acaaagattgggagctgcatGaagagcgttggtgagactca	14	6	1	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	27449820	27449820	G	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.2277	p.M759I	1.000	tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	73	0	0	34	7	17.07	-	-	-	A	27449820	G	A	27449820	3	1	21	1	0	0	0	0	1	0	0	0	2590	1290	45	2	2335	2	CAD	2	27449820	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	12075062	27449820	215749553	8	1077										
SRBD1	0	genome.wustl.edu	37	chr2	45789854	45789854	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tcagaaatattgaccttaacCgtcagtaccttcaaattttc	4	10	3	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	45789854	45789854	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	silent	c.1347	p.T449	0.995	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	263	0	0	87	35	28.69	-	-	-	T	45789854	C	T	45789854	2	4	21	1	0	0	0	0	0	0	0	1	15224	639	23	1		1	SRBD1	2	45789854	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	18340034	45789854	197409519	9	1078										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48808551	48808551	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atgtgctgaagaaaatgcctCttcctttgtcccccacacac	6	14	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	48808551	48808551	C	G	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.779	p.S260C	0.537	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	104	0	0	47	12	20.34	-	-	-	G	48808551	C	G	48808551	3	3	21	1	0	0	0	0	1	0	0	0	15408	913	32	2	781	2	STON1-GTF2A1L	2	48808551	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	3018697	48808551	194390822	10	1079										
DYSF	0	genome.wustl.edu	37	chr2	71871094	71871094	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tctttctttctacccactcaGgaggaagagttcatcgattg	8	10	5	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	71871094	71871094	G	A	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	splice_site	c.4504-1	e42-1	1.000	-	-	-	no_errors	DYSF	HGNC	ENSG00000135636	134	0	0	84	15	15.15	-	-	-	A	71871094	G	A	71871094	5	1	21	1	0	0	0	0	0	0	1	0	4894	1014	35	4	4831	4	DYSF	2	71871094	Splice_Site	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	23062543	71871094	171328279	11	1080										
CNGA3	0	genome.wustl.edu	37	chr2	99013187	99013187	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aagggagatattgggaaggaGatgtacatcatcaacgaggg	15	4	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	99013187	99013187	G	A	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	silent	c.1554	p.E518	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	101	0	0	43	10	18.87	-	-	-	A	99013187	G	A	99013187	2	1	21	1	0	0	0	0	0	0	0	1	3628	933	33	2		2	CNGA3	2	99013187	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	27142093	99013187	144186186	12	1081										
ASNSD1	0	genome.wustl.edu	37	chr2	190535312	190535312	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttggtcttacagcctctgctCttctgcccaaacgggccatg	9	14	4	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	190535312	190535312	C	G	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.1792	p.L598V	0.397	pfam_Asn_synthase	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	108	0	0	78	9	10.34	-	-	-	G	190535312	C	G	190535312	3	3	21	1	0	0	0	0	1	0	0	0	1053	913	32	2	1802	2	ASNSD1	2	190535312	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	91522125	190535312	52664061	13	1082										
CRYGC	0	genome.wustl.edu	37	chr2	208993007	208993007	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ctggcaccgcctgtactcttGgggcctcagcaggtattgcc	12	14	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	208993007	208993007	G	A	SNP	CRYGC	ENST00000282141	human	ensembl	69_37n	-1	known	nonsense	c.445	p.Q149*	0.103	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254	100	0	0	39	11	22	-	-	-	A	208993007	G	A	208993007	4	1	21	1	0	0	0	0	0	1	0	0	3946	1357	47	4	83	4	CRYGC	2	208993007	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	18457695	208993007	34206366	14	1083										
PTH2R	0	genome.wustl.edu	37	chr2	209302289	209302289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttgtttccctgaatgggatgGactcatttgttggcccagag	12	8	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	2	209302289	209302289	G	A	SNP	PTH2R	ENST00000272847	human	ensembl	69_37n	1	known	missense	c.206	p.G69E	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407	196	0	0	83	15	15.31	-	-	-	A	209302289	G	A	209302289	3	1	21	1	0	0	0	0	1	0	0	0	12841	1174	41	2	216	2	PTH2R	2	209302289	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	309282	209302289	33897084	15	1084										
TRIM42	0	genome.wustl.edu	37	chr3	140401809	140401809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tctttgtggacaccagcgccGaggaacaggacgagaagatc	13	10	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	3	140401809	140401809	G	A	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.847	p.E283K	0.465	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	178	0	0	77	14	15.05	-	-	-	A	140401809	G	A	140401809	3	1	21	1	0	0	0	0	1	0	0	0	16613	1059	37	1	853	1	TRIM42	3	140401809	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		140401809	57620621	16	1085										
ATR	0	genome.wustl.edu	37	chr3	142172007	142172007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ctccagtttcattcagtggcGctttggaatgccctttcact	8	12	3	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	3	142172007	142172007	G	A	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.7724	p.A2575V	0.977	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	307	0	0	122	23	15.86	-	-	-	A	142172007	G	A	142172007	3	1	21	1	0	0	0	0	1	0	0	0	1208	1087	38	1	218	1	ATR	3	142172007	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	1770198	142172007	55850423	17	1086										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	141	0	0	43	30	41.1	-	-	-	G	178952085	A	G	178952085	3	3	21	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A04W-01A-31D-A10Y-09	36780078	178952085	19070345	18	1087										
MUC4	0	genome.wustl.edu	37	chr3	195490502	195490502	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gtggtgatgtgggggtccccGaacatccaggctggaaggaa	17	8	0	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	3	195490502	195490502	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.14055	p.F4685	0.995	pfam_VWF_type-D,smart_VWF_type-D	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	31	0	0	10	5	33.33	-	-	-	A	195490502	G	A	195490502	2	1	21	1	0	0	0	0	0	0	0	1	10050	1049	37	1		1	MUC4	3	195490502	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	16538417	195490502	2531928	19	1088										
HTT	0	genome.wustl.edu	37	chr4	3224137	3224137	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggaccagtcgtactcagtttGaagaaacttgggccaccctc	10	12	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	3224137	3224137	G	A	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.7393	p.E2465K	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	84	0	0	59	8	11.94	-	-	-	A	3224137	G	A	3224137	3	1	21	1	0	0	0	0	1	0	0	0	7511	1291	45	2	7607	2	HTT	4	3224137	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		3224137	187930139	20	1089										
SPINK2	0	genome.wustl.edu	37	chr4	57677909	57677909	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggacatgtcactgccacacaCagggttaaagtgtctgggac	12	10	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	57677909	57677909	C	G	SNP	SPINK2	ENST00000248701	human	ensembl	69_37n	-1	known	missense	c.151	p.V51L	0.984	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	-	no_errors	SPINK2	HGNC	ENSG00000128040	106	0	0	41	8	16.33	-	-	-	G	57677909	C	G	57677909	3	3	21	1	0	0	0	0	1	0	0	0	15151	478	17	4	111	4	SPINK2	4	57677909	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	54453772	57677909	133476367	21	1090										
TMPRSS11E	0	genome.wustl.edu	37	chr4	69334622	69334622	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aaatgcattttataaatctcCattaagggaagaatttgtca	6	5	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	69334622	69334622	C	A	SNP	TMPRSS11E	ENST00000305363	human	ensembl	69_37n	1	known	missense	c.284	p.P95Q	0.000	pirsf_Pept_S1A_HAT/DESC1,pfam_SEA,pfscan_SEA	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11E	HGNC	ENSG00000087128	125	0	0	181	34	15.81	-	-	-	A	69334622	C	A	69334622	3	1	21	1	0	0	0	0	1	0	0	0	16337	594	21	4	298	4	TMPRSS11E	4	69334622	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	11656713	69334622	121819654	22	1091										
GRID2	0	genome.wustl.edu	37	chr4	94031970	94031970	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atgttgcacttcagaaggtaGaaaacaacatcaataaaatg	7	6	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	94031970	94031970	G	A	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.601	p.E201K	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	195	0	0	78	16	17.02	-	-	-	A	94031970	G	A	94031970	3	1	21	1	0	0	0	0	1	0	0	0	6823	943	33	2	615	2	GRID2	4	94031970	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	24697348	94031970	97122306	23	1092										
UNC5C	0	genome.wustl.edu	37	chr4	96123917	96123917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggtgtcatccagacagtagaCtcggatgctgtactccagcg	12	11	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	96123917	96123917	C	T	SNP	UNC5C	ENST00000453304	human	ensembl	69_37n	-1	known	missense	c.2101	p.V701I	1.000	NULL	pfam_ZU5,pfam_Death,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5C	HGNC	ENSG00000182168	136	0	0	32	13	28.89	-	-	-	T	96123917	C	T	96123917	3	4	21	1	0	0	0	0	1	0	0	0	17090	565	20	4	714	4	UNC5C	4	96123917	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	2091947	96123917	95030359	24	1093										
FAT4	0	genome.wustl.edu	37	chr4	126412418	126412418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tgcagaccatgggaggtcttCttcagaggaggactgcagaa	14	8	3	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	4	126412418	126412418	C	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.14441	p.S4814C	0.983	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	45	0	0	23	4	14.81	-	-	-	G	126412418	C	G	126412418	3	3	21	1	0	0	0	0	1	0	0	0	5738	913	32	2	14507	2	FAT4	4	126412418	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	30288501	126412418	64741858	25	1094										
DNAH5	0	genome.wustl.edu	37	chr5	13708337	13708337	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atagcaagtttcagctcagtGagggtgctgcggacaaggct	14	8	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	13708337	13708337	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.13233	p.L4411	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	203	0	0	92	14	13.21	-	-	-	A	13708337	G	A	13708337	2	1	21	1	0	0	0	0	0	0	0	1	4640	1277	45	2		2	DNAH5	5	13708337	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		13708337	167206923	26	1095										
PCDHA7	0	genome.wustl.edu	37	chr5	140214152	140214152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agctggcggagctggtgccgCgcctgttccgggcggtgtgc	19	12	0	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	140214152	140214152	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.184	p.R62C	0.996	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	83	0	0	35	5	12.5	-	-	-	T	140214152	C	T	140214152	3	4	21	1	0	0	0	0	1	0	0	0	11602	768	27	1	186	1	PCDHA7	5	140214152	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	126505815	140214152	40701108	27	1096										
PCDHB7	0	genome.wustl.edu	37	chr5	140552525	140552525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cgcttcggtattttgtggcgGaggaaaccgagagaggcacc	15	9	0	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	140552525	140552525	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.109	p.E37K	0.997	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	289	0	0	136	27	16.56	-	-	-	A	140552525	G	A	140552525	3	1	21	1	0	0	0	0	1	0	0	0	11620	1175	41	2	111	2	PCDHB7	5	140552525	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	338373	140552525	40362735	28	1097										
PCDHGB7	0	genome.wustl.edu	37	chr5	140798033	140798033	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tgcagaagactctggaccgaGaaacgcagagcgctcaccac	11	13	2	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	140798033	140798033	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.607	p.E203K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	76	0	0	24	6	20	-	-	-	A	140798033	G	A	140798033	3	1	21	1	0	0	0	0	1	0	0	0	11641	943	33	2	609	2	PCDHGB7	5	140798033	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	245508	140798033	40117227	29	1098										
ATP10B	0	genome.wustl.edu	37	chr5	160067594	160067594	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gttcagcatggctttcgtctCatggcctttgagagaaaatg	11	8	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	160067594	160067594	C	G	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.874	p.E292Q	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	182	0	0	87	13	13	-	-	-	G	160067594	C	G	160067594	3	3	21	1	0	0	0	0	1	0	0	0	1121	835	29	2	3579	2	ATP10B	5	160067594	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	19269561	160067594	20847666	30	1099										
WWC1	0	genome.wustl.edu	37	chr5	167855767	167855767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	acgaatcggaagcagtgggtGcgacccgaattcagattgcc	13	10	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	5	167855767	167855767	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.1975	p.A659T	0.071	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	192	0	0	88	13	12.87	-	-	-	A	167855767	G	A	167855767	3	1	21	1	0	0	0	0	1	0	0	0	17508	1319	46	4	2025	4	WWC1	5	167855767	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	7788173	167855767	13059493	31	1100										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27805901	27805901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gatgcgggtcttcttgttgtCgcgggccgcgttgccagcca	15	12	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	6	27805901	27805901	C	T	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.217	p.D73N	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	148	0	0	74	13	14.94	-	-	-	T	27805901	C	T	27805901	3	4	21	1	0	0	0	0	1	0	0	0	7188	884	31	1	179	1	HIST1H2AK	6	27805901	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		27805901	143309166	32	1101										
BAI3	0	genome.wustl.edu	37	chr6	70070933	70070933	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atccagcaacccacaggtttGcacatgcccatgagtatgaa	8	12	0	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	6	70070933	70070933	G	C	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.3768	p.L1256F	0.998	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	154	0	0	49	13	20.97	-	-	-	C	70070933	G	C	70070933	3	2	21	1	0	0	0	0	1	0	0	0	1304	1310	46	4	3874	4	BAI3	6	70070933	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	42265032	70070933	101044134	33	1102										
MDN1	0	genome.wustl.edu	37	chr6	90371881	90371881	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gcttcttccttttcttccttCttatcttgctggcttttatc	4	12	4	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	6	90371881	90371881	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.14490	p.K4830N	0.144	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	773	0	0	351	46	11.56	-	-	-	G	90371881	C	G	90371881	3	3	21	1	0	0	0	0	1	0	0	0	9486	912	32	2	2364	2	MDN1	6	90371881	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	20300948	90371881	80743186	34	1103										
ULBP3	0	genome.wustl.edu	37	chr6	150387233	150387233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atccacctggctctggacctCacaccactgttgcccatgtc	7	17	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	6	150387233	150387233	C	G	SNP	ULBP3	ENST00000367339	human	ensembl	69_37n	-1	known	missense	c.154	p.E52Q	0.004	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP3	HGNC	ENSG00000131019	190	0	0	74	16	17.78	-	-	-	G	150387233	C	G	150387233	3	3	21	1	0	0	0	0	1	0	0	0	17071	835	29	2	591	2	ULBP3	6	150387233	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	60015352	150387233	20727834	35	1104										
TNRC18	0	genome.wustl.edu	37	chr7	5399197	5399197	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gtcagcagagacttgctgctCagcctgaaacgcagacacac	10	13	2	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	5399197	5399197	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	silent	c.4665	p.L1555	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	187	0	0	88	15	14.56	-	-	-	T	5399197	C	T	5399197	2	4	21	1	0	0	0	0	0	0	0	1	16434	813	29	2		2	TNRC18	7	5399197	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		5399197	153739466	36	1105										
POU6F2	0	genome.wustl.edu	37	chr7	39503850	39503850	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aacactatagctagcagtctGacagccaaactgaaccctgg	8	12	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	39503850	39503850	G	C	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	silent	c.1641	p.L547	1.000	superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	153	0	0	77	19	19.79	-	-	-	C	39503850	G	C	39503850	2	2	21	1	0	0	0	0	0	0	0	1	12358	1277	45	2		2	POU6F2	7	39503850	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	34104653	39503850	119634813	37	1106										
SEMA3C	0	genome.wustl.edu	37	chr7	80418802	80418802	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gacaacatcatctgggaactCcttggtggttcgcatattgg	11	9	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	80418802	80418802	C	A	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	nonsense	c.1228	p.E410*	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	266	0	0	148	21	12.43	-	-	-	A	80418802	C	A	80418802	4	1	21	1	0	0	0	0	0	1	0	0	14114	864	30	2	1109	2	SEMA3C	7	80418802	Nonsense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	40914952	80418802	78719861	38	1107										
SEMA3E	0	genome.wustl.edu	37	chr7	83119463	83119463	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tcactgattctctccaagctGagggaatatacaaggtccct	8	11	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	83119463	83119463	G	A	SNP	SEMA3E	ENST00000307792	human	ensembl	69_37n	-1	known	silent	c.243	p.L81	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3E	HGNC	ENSG00000170381	186	0	0	105	16	13.22	-	-	-	A	83119463	G	A	83119463	2	1	21	1	0	0	0	0	0	0	0	1	14116	1277	45	2		2	SEMA3E	7	83119463	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	2700661	83119463	76019200	39	1108										
SEMA3A	0	genome.wustl.edu	37	chr7	83634727	83634727	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tacgacaatttgtgtaaattGataatttacatccgttttga	6	5	0	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	83634727	83634727	G	C	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.1288	p.Q430E	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	302	0	0	135	15	10	-	-	-	C	83634727	G	C	83634727	3	2	21	1	0	0	0	0	1	0	0	0	14112	1299	45	2	1055	2	SEMA3A	7	83634727	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	515264	83634727	75503936	40	1109										
MUC17	0	genome.wustl.edu	37	chr7	100685492	100685492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aggctagcacaccttccactCcttctgttgacagaagcaca	7	14	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	100685492	100685492	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.10795	p.P3599S	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	178	0	0	88	32	26.67	-	-	-	T	100685492	C	T	100685492	3	4	21	1	0	0	0	0	1	0	0	0	10046	855	30	2	10805	2	MUC17	7	100685492	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	17050765	100685492	58453171	41	1110										
SMO	0	genome.wustl.edu	37	chr7	128850818	128850818	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gctctcaggttgactgggcaGagtgacgatgagccaaagcg	15	9	1	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	128850818	128850818	G	A	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	silent	c.1665	p.Q555	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	54	0	0	21	6	22.22	-	-	-	A	128850818	G	A	128850818	2	1	21	1	0	0	0	0	0	0	0	1	14889	933	33	2		2	SMO	7	128850818	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	28165326	128850818	30287845	42	1111										
UBN2	0	genome.wustl.edu	37	chr7	138944054	138944054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gatattgagatgaagaagcgGaagcggaaagaggaagggga	18	2	0	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	138944054	138944054	G	A	SNP	UBN2	ENST00000483726	human	ensembl	69_37n	1	putative	missense	c.149	p.G50E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN2	HGNC	ENSG00000157741	265	0	0	184	27	12.8	-	-	-	A	138944054	G	A	138944054	3	1	21	1	0	0	0	0	1	0	0	0	16990	1161	41	2	861	2	UBN2	7	138944054	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	10093236	138944054	20194609	43	1112										
NCAPG2	0	genome.wustl.edu	37	chr7	158449288	158449288	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cagccagttgtcaacaagctCcagaatgtgccccacctgcc	8	16	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	7	158449288	158449288	C	T	SNP	NCAPG2	ENST00000441982	human	ensembl	69_37n	-1	known	nonsense	c.1575	p.W525*	1.000	pfam_Condensin2_G2	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCAPG2	HGNC	ENSG00000146918	95	0	0	52	7	11.86	-	-	-	T	158449288	C	T	158449288	4	4	21	1	0	0	0	0	0	1	0	0	10280	864	30	2	1305	2	NCAPG2	7	158449288	Nonsense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	19505234	158449288	689375	44	1113										
GINS4	0	genome.wustl.edu	37	chr8	41397268	41397268	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggggagccttccagcctctcGccggaagagttggcctttgc	14	13	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	8	41397268	41397268	G	A	SNP	GINS4	ENST00000276533	human	ensembl	69_37n	1	known	silent	c.369	p.S123	0.817	pfam_GINS_complex,pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536	96	0	0	47	18	27.69	-	-	-	A	41397268	G	A	41397268	2	1	21	1	0	0	0	0	0	0	0	1	6442	1074	38	1		1	GINS4	8	41397268	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		41397268	104966754	45	1114										
RGS22	0	genome.wustl.edu	37	chr8	101092487	101092487	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tcgaggttgctggttttgtaGaatttttttcagttgttttt	10	3	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	8	101092487	101092487	G	C	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.214	p.L72V	0.995	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	226	0	0	134	23	14.65	-	-	-	C	101092487	G	C	101092487	3	2	21	1	0	0	0	0	1	0	0	0	13389	933	33	2	3676	2	RGS22	8	101092487	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	59695219	101092487	45271535	46	1115										
WDR67	0	genome.wustl.edu	37	chr8	124132400	124132400	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttccagaacaaccaactcatCtgttttgaagttattgctac	5	10	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	8	124132400	124132400	C	T	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	silent	c.1542	p.I514	1.000	pfam_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	264	0	0	132	17	11.41	-	-	-	T	124132400	C	T	124132400	2	4	21	1	0	0	0	0	0	0	0	1	17415	903	32	2		2	WDR67	8	124132400	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	23039913	124132400	22231622	47	1116										
TG	0	genome.wustl.edu	37	chr8	133945871	133945871	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cggagccagagatttcctgtGatttctatgcttggacaagt	11	8	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	8	133945871	133945871	G	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.4882	p.D1628Y	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	238	0	0	101	22	17.89	-	-	-	T	133945871	G	T	133945871	3	4	21	1	0	0	0	0	1	0	0	0	15908	1290	45	2	4976	2	TG	8	133945871	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	9813471	133945871	12418151	48	1117										
PLEC	0	genome.wustl.edu	37	chr8	145001160	145001160	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cctacctcctggatgacactCtctgatcccgactggacctt	7	16	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	8	145001160	145001160	C	G	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.4341	p.E1447D	0.998	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	88	0	0	81	13	13.83	-	-	-	G	145001160	C	G	145001160	3	3	21	1	0	0	0	0	1	0	0	0	12126	912	32	2	9729	2	PLEC	8	145001160	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	11055289	145001160	1362862	49	1118										
FREM1	0	genome.wustl.edu	37	chr9	14868949	14868949	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agcagcagcagcacggcattCgcagccccccaactcagaga	10	16	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	14868949	14868949	C	T	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.27	p.A9	0.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	73	0	0	24	5	17.24	-	-	-	T	14868949	C	T	14868949	2	4	21	1	0	0	0	0	0	0	0	1	6093	871	31	1		1	FREM1	9	14868949	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		14868949	126344482	50	1119										
TAF1L	0	genome.wustl.edu	37	chr9	32634886	32634886	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	catgctgcataatcccagccAatggaagggtcagctttcca	9	12	1	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	32634886	32634886	A	G	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.692	p.L231S	0.999	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	283	0	0	135	37	21.51	-	-	-	G	32634886	A	G	32634886	3	3	21	1	0	0	0	0	1	0	0	0	15615	131	5	5	4792	5	TAF1L	9	32634886	Missense_Mutation	SNP	A	TCGA-A2-A04W-01A-31D-A10Y-09	17765937	32634886	108578545	51	1120										
TLN1	0	genome.wustl.edu	37	chr9	35722140	35722140	+	Nonsense_Mutation	SNP	G	G	T													0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	accaggaagaaggagacaccGtaagtcttgagagaacgggc							TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	35722140	35722140	G	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	nonsense	c.924	p.Y308*	0.383	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	142	0	0	76	13	14.61	-	-	-	T	35722140	G	T	35722140	4	4	21	1	0	0	0	0	0	1	0	0	16042	1140	40	3	6897	3	TLN1	9	35722140	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	3087254	35722140	105491291	52	1121	7	2								
TLN1	0	genome.wustl.edu	37	chr9	35722141	35722141	+	Missense_Mutation	SNP	T	T	C													0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ccaggaagaaggagacaccgTaagtcttgagagaacgggct							TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	35722141	35722141	T	C	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.923	p.Y308C	0.998	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	146	0	0	74	13	14.94	-	-	-	C	35722141	T	C	35722141	3	2	21	1	0	0	0	0	1	0	0	0	16042	1638	57	5	6898	5	TLN1	9	35722141	Missense_Mutation	SNP	T	TCGA-A2-A04W-01A-31D-A10Y-09	1	35722141	105491290	53	1122	7	2								
DNAJC25-GNG10	0	genome.wustl.edu	37	chr9	114429136	114429136	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cttcaacagtactgtatgcaGaatgcctgcaaggatgccct	9	11	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	114429136	114429136	G	C	SNP	DNAJC25-GNG10	ENST00000374294	human	ensembl	69_37n	1	known	missense	c.378	p.Q126H	1.000	pfam_G-protein_gamma-like_dom,superfamily_DnaJ_N,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_DnaJ_N,pfam_G-protein_gamma-like_dom,superfamily_DnaJ_N,smart_DnaJ_N,smart_G-protein_gamma-like_dom,pfscan_DnaJ_N,pfscan_G-protein_gamma-like_dom,prints_Hsp_DnaJ,prints_Gprotein-gamma	-	no_errors	DNAJC25-GNG10	HGNC	ENSG00000244115	145	0	0	68	13	16.05	-	-	-	C	114429136	G	C	114429136	3	2	21	1	0	0	0	0	1	0	0	0	4679	933	33	2	384	2	DNAJC25-GNG10	9	114429136	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	78706995	114429136	26784295	54	1123										
UBAC1	0	genome.wustl.edu	37	chr9	138845595	138845595	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cgcttttttatcaataatagGacatctagaaaaaacaacac	4	8	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	138845595	138845595	G	C	SNP	UBAC1	ENST00000371756	human	ensembl	69_37n	-1	known	silent	c.264	p.V88	0.988	NULL	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560	126	0	0	69	11	13.75	-	-	-	C	138845595	G	C	138845595	2	2	21	1	0	0	0	0	0	0	0	1	16931	1161	41	2		2	UBAC1	9	138845595	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	24416459	138845595	2367836	55	1124										
SLC34A3	0	genome.wustl.edu	37	chr9	140126583	140126583	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cagacccctggaccctccctCagctgaaggacacaagccag	9	17	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	9	140126583	140126583	C	T	SNP	SLC34A3	ENST00000361134	human	ensembl	69_37n	1	known	nonsense	c.145	p.Q49*	0.999	NULL	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A3	HGNC	ENSG00000198569	51	0	0	19	5	20.83	-	-	-	T	140126583	C	T	140126583	4	4	21	1	0	0	0	0	0	1	0	0	14658	827	29	2	151	2	SLC34A3	9	140126583	Nonsense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	1280988	140126583	1086848	56	1125										
ARMC4	0	genome.wustl.edu	37	chr10	28273951	28273951	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttttgaaaaagactcacaatGaaatatgttttagagaatga	7	3	1	5			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	10	28273951	28273951	G	A	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	missense	c.572	p.S191L	0.687	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	121	0	0	57	11	16.18	-	-	-	A	28273951	G	A	28273951	3	1	21	1	0	0	0	0	1	0	0	0	957	1294	45	2	2630	2	ARMC4	10	28273951	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		28273951	107260796	57	1126										
EGR2	0	genome.wustl.edu	37	chr10	64573184	64573184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	catcactccgggcaaactttCggccacagtagtcacaggcg	10	14	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	10	64573184	64573184	C	T	SNP	EGR2	ENST00000242480	human	ensembl	69_37n	-1	known	missense	c.1214	p.R405Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877	199	0	0	82	40	32.79	-	-	-	T	64573184	C	T	64573184	3	4	21	1	0	0	0	0	1	0	0	0	5007	884	31	1	220	1	EGR2	10	64573184	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	36299233	64573184	70961563	58	1127										
MMS19	0	genome.wustl.edu	37	chr10	99222427	99222427	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atagtacttttctcagaactGagggctccttctctgcaaaa	7	10	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	10	99222427	99222427	G	T	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	nonsense	c.1925	p.S642*	0.333	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	235	0	0	113	19	14.39	-	-	-	T	99222427	G	T	99222427	4	4	21	1	0	0	0	0	0	1	0	0	9744	1294	45	2	1215	2	MMS19	10	99222427	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	34649243	99222427	36312320	59	1128										
TRIM8	0	genome.wustl.edu	37	chr10	104416924	104416924	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ccaccagccctacccccgctCcggccactttccctggacag	7	22	0	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	10	104416924	104416924	C	G	SNP	TRIM8	ENST00000302424	human	ensembl	69_37n	1	known	missense	c.1469	p.S490C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRIM8	HGNC	ENSG00000171206	36	0	0	18	4	18.18	-	-	-	G	104416924	C	G	104416924	3	3	21	1	0	0	0	0	1	0	0	0	16644	855	30	2	1491	2	TRIM8	10	104416924	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	5194497	104416924	31117823	60	1129										
OR52N5	0	genome.wustl.edu	37	chr11	5799262	5799262	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ccatagattacattgaccttGatgctggcacaagatagctt	8	9	0	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	11	5799262	5799262	G	C	SNP	OR52N5	ENST00000317093	human	ensembl	69_37n	-1	known	missense	c.603	p.I201M	0.261	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009	85	0	0	56	16	22.22	-	-	-	C	5799262	G	C	5799262	3	2	21	1	0	0	0	0	1	0	0	0	11203	1280	45	2	375	2	OR52N5	11	5799262	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		5799262	129207254	61	1130										
ACER3	0	genome.wustl.edu	37	chr11	76726161	76726161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	catattttgtgagtcactgaGgtaagatatattttcattcc	7	6	2	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	11	76726161	76726161	G	C	SNP	ACER3	ENST00000532485	human	ensembl	69_37n	1	known	missense	c.599	p.R200T	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER3	HGNC	ENSG00000078124	165	0	0	75	11	12.79	-	-	-	C	76726161	G	C	76726161	3	2	21	1	0	0	0	0	1	0	0	0	140	1014	35	4	629	4	ACER3	11	76726161	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	70926899	76726161	58280355	62	1131										
NPAT	0	genome.wustl.edu	37	chr11	108047018	108047018	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tttaactgctagattagtttCatctgctaagactatactgg	7	7	2	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	11	108047018	108047018	C	T	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	missense	c.1087	p.E363K	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	200	0	0	85	11	11.46	-	-	-	T	108047018	C	T	108047018	3	4	21	1	0	0	0	0	1	0	0	0	10638	835	29	2	3224	2	NPAT	11	108047018	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	31320857	108047018	26959498	63	1132										
OR10G4	0	genome.wustl.edu	37	chr11	123887198	123887198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gaaacttagagacaaagtagCacatcctcagaggaaataaa	8	7	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	11	123887198	123887198	C	A	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	missense	c.917	p.A306E	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	145	0	0	78	13	14.29	-	-	-	A	123887198	C	A	123887198	3	1	21	1	0	0	0	0	1	0	0	0	10974	710	25	4	919	4	OR10G4	11	123887198	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	15840180	123887198	11119318	64	1133										
CHD4	0	genome.wustl.edu	37	chr12	6688060	6688060	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atctattgctgacttttcctCcaccttctctacatcagcag	4	14	3	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	6688060	6688060	C	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	nonsense	c.5017	p.E1673*	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	220	0	0	123	18	12.77	-	-	-	A	6688060	C	A	6688060	4	1	21	1	0	0	0	0	0	1	0	0	3356	864	30	2	833	2	CHD4	12	6688060	Nonsense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		6688060	127163835	65	1134										
TAS2R9	0	genome.wustl.edu	37	chr12	10962482	10962482	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gagcagcataaagaagccatCtaatgatattacacacagca	7	9	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	10962482	10962482	C	T	SNP	TAS2R9	ENST00000240691	human	ensembl	69_37n	-1	known	missense	c.193	p.D65N	0.262	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R9	HGNC	ENSG00000121381	83	0	0	54	9	14.29	-	-	-	T	10962482	C	T	10962482	3	4	21	1	0	0	0	0	1	0	0	0	15680	913	32	2	749	2	TAS2R9	12	10962482	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	4274422	10962482	122889413	66	1135										
NACA	0	genome.wustl.edu	37	chr12	57115051	57115051	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttcccaaaggtagggctgttCcagaggatgactggggaaaa	14	7	0	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	57115051	57115051	C	G	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.263	p.G88A	0.004	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	239	0	0	132	28	17.5	-	-	-	G	57115051	C	G	57115051	3	3	21	1	0	0	0	0	1	0	0	0	10205	855	30	2	6001	2	NACA	12	57115051	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	46152569	57115051	76736844	67	1136										
MYBPC1	0	genome.wustl.edu	37	chr12	102040663	102040663	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttccactgagctcttcgtaaGaggtaaaaatgaaatctctt	7	8	2	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	102040663	102040663	G	C	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	missense	c.1088	p.R363T	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	167	0	0	75	19	20.21	-	-	-	C	102040663	G	C	102040663	3	2	21	1	0	0	0	0	1	0	0	0	10083	942	33	2	1138	2	MYBPC1	12	102040663	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	44925612	102040663	31811232	68	1137										
GNPTAB	0	genome.wustl.edu	37	chr12	102158936	102158936	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gttggcaatagaagcatgtcGaattattggattgtcactat	10	5	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	102158936	102158936	G	A	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	nonsense	c.1759	p.R587*	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	408	1	0.24	197	31	13.6	-	-	-	A	102158936	G	A	102158936	4	1	21	1	0	0	0	0	0	1	0	0	6597	1066	37	1	2047	1	GNPTAB	12	102158936	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	118273	102158936	31692959	69	1138										
ATXN2	0	genome.wustl.edu	37	chr12	111991992	111991992	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gtaagtatatgaaccatcctCatatttgcatagattccatc	5	9	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	111991992	111991992	C	T	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.798	p.M266I	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	81	0	0	37	8	17.78	-	-	-	T	111991992	C	T	111991992	3	4	21	1	0	0	0	0	1	0	0	0	1215	826	29	2	3235	2	ATXN2	12	111991992	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	9833056	111991992	21859903	70	1139										
SBNO1	0	genome.wustl.edu	37	chr12	123795660	123795660	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tttatcaggccaacgcctatCagtccttgtcgaacatctgt	7	12	3	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	12	123795660	123795660	C	G	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	silent	c.3237	p.L1079	0.998	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	157	0	0	65	8	10.96	-	-	-	G	123795660	C	G	123795660	2	3	21	1	0	0	0	0	0	0	0	1	13949	813	29	2		2	SBNO1	12	123795660	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	11803668	123795660	10056235	71	1140										
NUFIP1	0	genome.wustl.edu	37	chr13	45540046	45540046	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttttaacttcttcttcctttCaatattggccagagttggat	6	8	3	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	13	45540046	45540046	C	G	SNP	NUFIP1	ENST00000379161	human	ensembl	69_37n	-1	known	missense	c.760	p.E254Q	1.000	pfam_NUFIP1_cons_dom	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635	438	1	0.23	191	29	13.18	-	-	-	G	45540046	C	G	45540046	3	3	21	1	0	0	0	0	1	0	0	0	10821	835	29	2	747	2	NUFIP1	13	45540046	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		45540046	69629832	72	1141										
LMO7	0	genome.wustl.edu	37	chr13	76430698	76430698	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tcaggagctgaagtcaggatCagaaaccaccaactgtactg	10	10	3	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	13	76430698	76430698	C	T	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	missense	c.4874	p.S1625L	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	175	0	0	79	12	13.19	-	-	-	T	76430698	C	T	76430698	3	4	21	1	0	0	0	0	1	0	0	0	8911	838	29	2	5105	2	LMO7	13	76430698	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	30890652	76430698	38739180	73	1142										
C15orf55	0	genome.wustl.edu	37	chr15	34640323	34640323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	catgccttcagtattctctcCagacaaccctctgatgctct	5	15	4	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	15	34640323	34640323	C	T	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	missense	c.170	p.P57L	0.635	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	163	0	0	64	12	15.79	-	-	-	T	34640323	C	T	34640323	3	4	21	1	0	0	0	0	1	0	0	0	1815	594	21	4	176	4	C15orf55	15	34640323	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		34640323	67891069	74	1143										
CASC5	0	genome.wustl.edu	37	chr15	40914718	40914718	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gactattgccatgacaagatGattatatgttcagaggaaga	10	5	1	5			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	15	40914718	40914718	G	A	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.2334	p.M778I	0.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	100	0	0	35	16	31.37	-	-	-	A	40914718	G	A	40914718	3	1	21	1	0	0	0	0	1	0	0	0	2688	1290	45	2	2372	2	CASC5	15	40914718	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	6274395	40914718	61616674	75	1144										
TMC5	0	genome.wustl.edu	37	chr16	19501758	19501759	+	Frame_Shift_Del	DEL	CT	CT	-													0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tggcccttttcgaggtctgcCtctcttcattcactccatct							TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	16	19501758	19501759	CT	-	DEL	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	frame_shift_del	c.2615_2616	p.F874fs	0.870:0.130	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	256	0	0	146	20	11.98	-	-	-	-	19501759	CT	-	19501758	7	5	21	1	0	1	0	1	0	0	0	0	16083	681	24	0	2991	0	TMC5	16	19501758	Frame_Shift_Del	DEL	CT	TCGA-A2-A04W-01A-31D-A10Y-09		19501758	70852995	76	1145										
EDC4	0	genome.wustl.edu	37	chr16	67913012	67913012	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cacactgaggtgctgcctgcCgaagaggaaaatgacagcct	12	11	0	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	16	67913012	67913012	C	A	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	silent	c.1440	p.A480	0.067	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	58	0	0	32	7	17.95	-	-	-	A	67913012	C	A	67913012	2	1	21	1	0	0	0	0	0	0	0	1	4943	639	23	3		3	EDC4	16	67913012	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	48411254	67913012	22441741	77	1146										
TP53	0	genome.wustl.edu	37	chr17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aggacaggcacaaacacgcaCctcaaagctgttccgtccca	8	15	1	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	17	7577124	7577124	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.814	p.V272M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	168	0	0	61	32	34.41	-	-	-	T	7577124	C	T	7577124	3	4	21	1	0	0	0	0	1	0	0	0	16477	507	18	4	472	4	TP53	17	7577124	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		7577124	73618086	78	1147										
PLXDC1	0	genome.wustl.edu	37	chr17	37263689	37263689	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggcaaagacaatgcggccgtCatggtgcagagctgcctgga	15	10	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	17	37263689	37263689	C	T	SNP	PLXDC1	ENST00000315392	human	ensembl	69_37n	-1	known	missense	c.682	p.D228N	0.067	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381	90	0	0	46	44	48.35	-	-	-	T	37263689	C	T	37263689	3	4	21	1	0	0	0	0	1	0	0	0	12191	826	29	2	856	2	PLXDC1	17	37263689	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	29686565	37263689	43931521	79	1148										
TBCD	0	genome.wustl.edu	37	chr17	80767627	80767627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ttcccagagccctggcggatGatgtggtcgggtctgtgctg	16	10	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	17	80767627	80767627	G	A	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.1192	p.D398N	0.999	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	236	0	0	105	14	11.76	-	-	-	A	80767627	G	A	80767627	3	1	21	1	0	0	0	0	1	0	0	0	15728	1290	45	2	1238	2	TBCD	17	80767627	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	43503938	80767627	427583	80	1149										
YES1	0	genome.wustl.edu	37	chr18	756691	756691	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	taactgctgttccctttgctGaagatgacggacatggtgac	11	9	0	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	18	756691	756691	G	A	SNP	YES1	ENST00000314574	human	ensembl	69_37n	-1	known	missense	c.137	p.S46L	0.109	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	YES1	HGNC	ENSG00000176105	264	0	0	117	22	15.83	-	-	-	A	756691	G	A	756691	3	1	21	1	0	0	0	0	1	0	0	0	17571	1294	45	2	1538	2	YES1	18	756691	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		756691	77320557	81	1150										
TTC39C	0	genome.wustl.edu	37	chr18	21712496	21712496	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aacagattgcatgtccgcatCcatgctgctctggcctctct	8	14	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	18	21712496	21712496	C	T	SNP	TTC39C	ENST00000317571	human	ensembl	69_37n	1	known	silent	c.1710	p.I570	1.000	NULL	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	-	no_errors	TTC39C	HGNC	ENSG00000168234	156	0	0	74	9	10.84	-	-	-	T	21712496	C	T	21712496	2	4	21	1	0	0	0	0	0	0	0	1	16806	845	30	2		2	TTC39C	18	21712496	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	20955805	21712496	56364752	82	1151										
KCTD1	0	genome.wustl.edu	37	chr18	24035810	24035810	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tgaactgggacgagtctactCctcccccacaggagcccacg	10	16	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	18	24035810	24035810	C	G	SNP	KCTD1	ENST00000417602	human	ensembl	69_37n	-1	known	missense	c.2495	p.G832A	1.000	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504	91	0	0	38	9	19.15	-	-	-	G	24035810	C	G	24035810	3	3	21	1	0	0	0	0	1	0	0	0	8150	855	30	2	106	2	KCTD1	18	24035810	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	2323314	24035810	54041438	83	1152										
DDX49	0	genome.wustl.edu	37	chr19	19035754	19035754	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	acccccgggctccccaagatCtacatccaccgagtcggccg	9	19	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	19035754	19035754	C	T	SNP	DDX49	ENST00000438170	human	ensembl	69_37n	1	known	missense	c.701	p.S234F	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX49	HGNC	ENSG00000105671	41	0	0	25	12	32.43	-	-	-	T	19035754	C	T	19035754	3	4	21	1	0	0	0	0	1	0	0	0	4397	903	32	2	1027	2	DDX49	19	19035754	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		19035754	40093229	84	1153										
MYBPC2	0	genome.wustl.edu	37	chr19	50945512	50945512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agttgatggtagagatcagcGacccagacctgaccctcaag	11	11	2	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	50945512	50945512	G	C	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.844	p.D282H	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	100	0	0	62	12	16.22	-	-	-	C	50945512	G	C	50945512	3	2	21	1	0	0	0	0	1	0	0	0	10084	1058	37	3	878	3	MYBPC2	19	50945512	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	31909758	50945512	8183471	85	1154										
IGLON5	0	genome.wustl.edu	37	chr19	51831946	51831946	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	cccaggatccctggagaactCagccccgaggcccccagggc	12	18	1	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	51831946	51831946	C	G	SNP	IGLON5	ENST00000270642	human	ensembl	69_37n	1	known	nonsense	c.944	p.S315*	0.930	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGLON5	HGNC	ENSG00000142549	68	0	0	36	5	12.2	-	-	-	G	51831946	C	G	51831946	4	3	21	1	0	0	0	0	0	1	0	0	7649	838	29	2	974	2	IGLON5	19	51831946	Nonsense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	886434	51831946	7297037	86	1155										
ZNF808	0	genome.wustl.edu	37	chr19	53057385	53057385	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	acaagtgtaatgagtgtggtAaggcttttaatcatcaatca	9	5	3	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	53057385	53057385	A	G	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.1009	p.K337E	0.124	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	193	0	0	116	27	18.88	-	-	-	G	53057385	A	G	53057385	3	3	21	1	0	0	0	0	1	0	0	0	18266	363	13	5	1226	5	ZNF808	19	53057385	Missense_Mutation	SNP	A	TCGA-A2-A04W-01A-31D-A10Y-09	1225439	53057385	6071598	87	1156										
NLRP13	0	genome.wustl.edu	37	chr19	56423843	56423843	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tggtggtagtctgagtgattGactggagatcgtaatacctc	13	6	1	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	56423843	56423843	G	C	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	nonsense	c.1340	p.S447*	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	75	0	0	87	30	25.64	-	-	-	C	56423843	G	C	56423843	4	2	21	1	0	0	0	0	0	1	0	0	10547	1294	45	2	1817	2	NLRP13	19	56423843	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	3366458	56423843	2705140	88	1157										
NLRP13	0	genome.wustl.edu	37	chr19	56424232	56424232	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tcagagcgtgactcagatatGattatttcctcaaagccatc	7	10	3	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	56424232	56424232	G	C	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	missense	c.951	p.I317M	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	103	0	0	126	41	24.55	-	-	-	C	56424232	G	C	56424232	3	2	21	1	0	0	0	0	1	0	0	0	10547	1280	45	2	2206	2	NLRP13	19	56424232	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	389	56424232	2704751	89	1158										
ZNF667	0	genome.wustl.edu	37	chr19	56953658	56953658	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tatattgaaagactgacattGactcaaggccttcccacagt	7	10	1	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	56953658	56953658	G	A	SNP	ZNF667	ENST00000342634	human	ensembl	69_37n	-1	known	nonsense	c.1090	p.Q364*	0.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046	223	0	0	191	27	12.39	-	-	-	A	56953658	G	A	56953658	4	1	21	1	0	0	0	0	0	1	0	0	18170	1299	45	2	1130	2	ZNF667	19	56953658	Nonsense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	529426	56953658	2175325	90	1159										
ZNF772	0	genome.wustl.edu	37	chr19	57984669	57984669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ctttctccagtgtgaattttCcagtggcggatgagggaagc	13	8	1	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	19	57984669	57984669	C	A	SNP	ZNF772	ENST00000343280	human	ensembl	69_37n	-1	known	missense	c.1443	p.W481C	0.645	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128	127	0	0	85	14	14.14	-	-	-	A	57984669	C	A	57984669	3	1	21	1	0	0	0	0	1	0	0	0	18238	856	30	2	30	2	ZNF772	19	57984669	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	1031011	57984669	1144314	91	1160										
DEFB128	0	genome.wustl.edu	37	chr20	168643	168643	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	atgttttttctcttcttcatCattagcacaacataatttcc	2	10	4	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	20	168643	168643	C	G	SNP	DEFB128	ENST00000334391	human	ensembl	69_37n	-1	known	missense	c.166	p.D56H	0.000	NULL	NULL	-	no_errors	DEFB128	HGNC	ENSG00000185982	445	0	0	237	36	13.14	-	-	-	G	168643	C	G	168643	3	3	21	1	0	0	0	0	1	0	0	0	4449	826	29	2	119	2	DEFB128	20	168643	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		168643	62856877	92	1161										
OPRL1	0	genome.wustl.edu	37	chr20	62729457	62729457	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggccatctgggccctggcctCtgttgtcggtgttcccgttg	14	13	2	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	20	62729457	62729457	C	G	SNP	OPRL1	ENST00000336866	human	ensembl	69_37n	1	known	missense	c.536	p.S179C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,prints_Neuropept_W_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_X_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPRL1	HGNC	ENSG00000125510	117	0	0	76	13	14.61	-	-	-	G	62729457	C	G	62729457	3	3	21	1	0	0	0	0	1	0	0	0	10959	913	32	2	542	2	OPRL1	20	62729457	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	62560814	62729457	296063	93	1162										
C21orf91	0	genome.wustl.edu	37	chr21	19190578	19190578	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gtctgttcccagtttacaaaCactgcaaatgttgtcatcat	6	10	3	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	21	19190578	19190578	C	A	SNP	C21orf91	ENST00000284881	human	ensembl	69_37n	-1	known	missense	c.58	p.V20F	1.000	pfam_EURL_prot	pfam_EURL_prot	-	no_errors	C21orf91	HGNC	ENSG00000154642	376	0	0	174	21	10.77	-	-	-	A	19190578	C	A	19190578	3	1	21	1	0	0	0	0	1	0	0	0	2154	478	17	4	851	4	C21orf91	21	19190578	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		19190578	28939317	94	1163										
SOD1	0	genome.wustl.edu	37	chr21	33039646	33039646	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	tctattgaagattctgtgatCtcactctcaggagaccattg	8	9	4	4			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	21	33039646	33039646	C	G	SNP	SOD1	ENST00000270142	human	ensembl	69_37n	1	known	missense	c.315	p.I105M	0.015	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom,prints_SOD_Cu_Zn_dom	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom,prints_SOD_Cu_Zn_dom	-	no_errors	SOD1	HGNC	ENSG00000142168	441	0	0	177	30	14.49	-	-	-	G	33039646	C	G	33039646	3	3	21	1	0	0	0	0	1	0	0	0	15009	903	32	2	329	2	SOD1	21	33039646	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	13849068	33039646	15090249	95	1164										
ISX	0	genome.wustl.edu	37	chr22	35480375	35480375	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	gtcctttctccctgattacaGatctggttccagaatcagcg	8	12	3	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	22	35480375	35480375	G	C	SNP	ISX	ENST00000308700	human	ensembl	69_37n	1	known	splice_site	c.382-1	e3-1	1.000	-	-	-	no_errors	ISX	HGNC	ENSG00000175329	100	0	0	36	5	12.2	-	-	-	C	35480375	G	C	35480375	5	2	21	1	0	0	0	0	0	0	1	0	7919	956	33	2	391	2	ISX	22	35480375	Splice_Site	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09		35480375	15824191	96	1165										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29301288	29301288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	aagaagactccatttggttcCggccaacattgctacaggac	9	11	0	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	X	29301288	29301288	C	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.316	p.R106W	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	137	0	0	59	10	14.49	-	-	-	T	29301288	C	T	29301288	3	4	21	1	0	0	0	0	1	0	0	0	7715	643	23	1	322	1	IL1RAPL1	23	29301288	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09		29301288	125969272	97	1166										
FAM47A	0	genome.wustl.edu	37	chrX	34150228	34150228	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ggacagccgtagcggaagtcGtccatgccctccttcacaaa	10	14	1	0			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	X	34150228	34150228	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	silent	c.168	p.D56	0.020	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	158	0	0	79	22	21.78	-	-	-	A	34150228	G	A	34150228	2	1	21	1	0	0	0	0	0	0	0	1	5615	1136	40	1		1	FAM47A	23	34150228	Silent	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	4848940	34150228	121120332	98	1167										
KIAA2022	0	genome.wustl.edu	37	chrX	73963037	73963037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agtccttgatctcacccataGcatcatatgagatctcaatg	6	11	3	2			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	X	73963037	73963037	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.1355	p.A452V	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	216	0	0	141	27	16.07	-	-	-	A	73963037	G	A	73963037	3	1	21	1	0	0	0	0	1	0	0	0	8321	971	34	4	3203	4	KIAA2022	23	73963037	Missense_Mutation	SNP	G	TCGA-A2-A04W-01A-31D-A10Y-09	39812809	73963037	81307523	99	1168										
ZIC3	0	genome.wustl.edu	37	chrX	136652162	136652162	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	agataccactaaaaccccttCtgcagttcaaactagcacca	4	14	2	1			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	X	136652162	136652162	C	G	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	missense	c.1337	p.S446C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	112	0	0	91	14	13.33	-	-	-	G	136652162	C	G	136652162	3	3	21	1	0	0	0	0	1	0	0	0	17776	913	32	2	1347	2	ZIC3	23	136652162	Missense_Mutation	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	62689125	136652162	18618398	100	1169										
GABRQ	0	genome.wustl.edu	37	chrX	151815558	151815558	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.46	46	3.29288186356339e-13	3.24588744588745	4.26022727272727	2.62167832167832	1	1	32	ctgaacagcaaggatgctttCgtgcatgatgtgactgtgga	13	7	0	3			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7822a6b1-68c8-4675-993c-c4b54a510c09	62188c38-1f49-4f09-bd46-f60922cd3e4a	X	151815558	151815558	C	T	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	silent	c.456	p.F152	0.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	308	0	0	178	24	11.88	-	-	-	T	151815558	C	T	151815558	2	4	21	1	0	0	0	0	0	0	0	1	6224	883	31	1		1	GABRQ	23	151815558	Silent	SNP	C	TCGA-A2-A04W-01A-31D-A10Y-09	15163396	151815558	3455002	101	1170										
UBE2Q1	0	genome.wustl.edu	37	chr1	154528347	154528350	+	Frame_Shift_Del	DEL	CTTT	CTTT	-													0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ccccctcaccagagtattccCtttctttatgtccaccagcc							TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	1	154528347	154528350	CTTT	-	DEL	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	frame_shift_del	c.421_418	p.K140fs	1.000:1.000:1.000:1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	93	0	0	171	24	12.24	-	-	-	-	154528350	CTTT	-	154528347	7	5	22	1	0	1	0	1	0	0	0	0	16966	681	24	0	895	0	UBE2Q1	1	154528347	Frame_Shift_Del	DEL	CTTT	TCGA-A2-A04X-01A-21W-A050-09		154528347	94722274	1	1171										
FBXO11	0	genome.wustl.edu	37	chr2	48047527	48047527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	aatcccaccatgctggccatCatgaattttgttatgccgaa	7	11	1	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	48047527	48047527	C	T	SNP	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	missense	c.1771	p.D591N	1.000	superfamily_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	108	0	0	69	22	24.18	-	-	-	T	48047527	C	T	48047527	3	4	22	1	0	0	0	0	1	0	0	0	5773	826	29	2	1142	2	FBXO11	2	48047527	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09		48047527	195151846	2	1172										
LRP2	0	genome.wustl.edu	37	chr2	170060630	170060630	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cattgcaatctgacctgaccCgtcatatttgttagctcggt	8	11	2	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	170060630	170060630	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7867	p.G2623R	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	239	0	0	166	53	24.2	-	-	-	G	170060630	C	G	170060630	3	3	22	1	0	0	0	0	1	0	0	0	9022	652	23	3	6252	3	LRP2	2	170060630	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	122013103	170060630	73138743	3	1173										
PDZRN3	0	genome.wustl.edu	37	chr3	73433778	73433778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cttgagctccaggagctcgcGgaagcgctcgcactcgtcca	12	15	0	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	3	73433778	73433778	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.1939	p.R647C	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	75	0	0	48	7	12.73	-	-	-	A	73433778	G	A	73433778	3	1	22	1	0	0	0	0	1	0	0	0	11782	1116	39	1	1265	1	PDZRN3	3	73433778	Missense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		73433778	124588652	4	1174										
NNT	0	genome.wustl.edu	37	chr5	43704416	43704416	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	gcagtggacaatccaatcttCtacaaacctaacacggccat	6	13	2	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	5	43704416	43704416	C	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	missense	c.3171	p.F1057L	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	147	0	0	141	43	23.24	-	-	-	G	43704416	C	G	43704416	3	3	22	1	0	0	0	0	1	0	0	0	10582	912	32	2	3253	2	NNT	5	43704416	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09		43704416	137210844	5	1175										
LRRC16A	0	genome.wustl.edu	37	chr6	25600890	25600890	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	agcagcccacaggcagggcgGaggtatggggtccaggtgat	18	9	0	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	25600890	25600890	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	silent	c.3468	p.R1156	0.853	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	319	0	0	222	62	21.83	-	-	-	A	25600890	G	A	25600890	2	1	22	1	0	0	0	0	0	0	0	1	9037	1161	41	2		2	LRRC16A	6	25600890	Silent	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		25600890	145514177	6	1176										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32634318	32634318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cagtagggagctcagcatcgCcagcatcaaggtgacagttg	13	10	2	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	32634318	32634318	C	A	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	missense	c.67	p.A23S	0.043	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	12	0	0	23	12	33.33	-	-	-	A	32634318	C	A	32634318	3	1	22	1	0	0	0	0	1	0	0	0	7257	739	26	4	738	4	HLA-DQB1	6	32634318	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	7033428	32634318	138480749	7	1177										
PTK7	0	genome.wustl.edu	37	chr6	43099859	43099859	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cgctgcattggccaggggcaGaggggcccacccatcatcct	13	15	1	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	43099859	43099859	G	A	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	silent	c.918	p.Q306	0.998	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	44	0	0	25	5	16.67	-	-	-	A	43099859	G	A	43099859	2	1	22	1	0	0	0	0	0	0	0	1	12846	933	33	2		2	PTK7	6	43099859	Silent	SNP	G	TCGA-A2-A04X-01A-21W-A050-09	10465541	43099859	128015208	8	1178										
CLIC5	0	genome.wustl.edu	37	chr6	46047880	46047880	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	taagtactcatggacatcatCataatggggactttcatttt	7	7	4	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	46047880	46047880	C	T	SNP	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	missense	c.100	p.D34N	0.023	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782	223	0	0	236	45	16.01	-	-	-	T	46047880	C	T	46047880	3	4	22	1	0	0	0	0	1	0	0	0	3559	826	29	2	1223	2	CLIC5	6	46047880	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	2948021	46047880	125067187	9	1179										
GSTA5	0	genome.wustl.edu	37	chr6	52701123	52701123	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	gtctgcaccagcttcatcccGtcaatctcaaccattggtac	6	15	4	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	52701123	52701123	G	A	SNP	GSTA5	ENST00000284562	human	ensembl	69_37n	-1	known	silent	c.183	p.D61	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793	227	0	0	245	62	20.13	-	-	-	A	52701123	G	A	52701123	2	1	22	1	0	0	0	0	0	0	0	1	6885	1136	40	1		1	GSTA5	6	52701123	Silent	SNP	G	TCGA-A2-A04X-01A-21W-A050-09	6653243	52701123	118413944	10	1180										
WTAP	0	genome.wustl.edu	37	chr6	160169354	160169354	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	gaacagactaaagacaaactGgaacaagcccaaaatgaact	7	9	0	3			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	160169354	160169354	G	T	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	1	known	silent	c.405	p.L135	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	236	0	0	129	61	32.11	-	-	-	T	160169354	G	T	160169354	2	4	22	1	0	0	0	0	0	0	0	1	17506	1335	47	4		4	WTAP	6	160169354	Silent	SNP	G	TCGA-A2-A04X-01A-21W-A050-09	107468231	160169354	10945713	11	1181										
STK31	0	genome.wustl.edu	37	chr7	23825188	23825188	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cagcaagcgtcctttggtacGttctgaggttaatgggcaga	13	8	1	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	23825188	23825188	G	C	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.2240	p.R747P	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	310	0	0	202	68	25.19	-	-	-	C	23825188	G	C	23825188	3	2	22	1	0	0	0	0	1	0	0	0	15387	1145	40	3	2310	3	STK31	7	23825188	Missense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		23825188	135313475	12	1182										
MGAM	0	genome.wustl.edu	37	chr7	141780655	141780655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	gaacatacccagcgtgccatCcagcacccctgagggtcaac	9	16	1	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	141780655	141780655	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.5915	p.S1972F	0.012	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	155	0	0	57	42	42.42	-	-	-	T	141780655	C	T	141780655	3	4	22	1	0	0	0	0	1	0	0	0	9612	870	30	2		2	MGAM	7	141780655	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	117955467	141780655	17358008	13	1183										
CA9	0	genome.wustl.edu	37	chr9	35674290	35674290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	agggctccctgaagttagagGatctacctactgttgaggct	12	9	1	3			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	35674290	35674290	G	T	SNP	CA9	ENST00000378357	human	ensembl	69_37n	1	known	missense	c.334	p.D112Y	1.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	175	0	0	99	31	23.85	-	-	-	T	35674290	G	T	35674290	3	4	22	1	0	0	0	0	1	0	0	0	2549	1174	41	2	336	2	CA9	9	35674290	Missense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		35674290	105539141	14	1184										
OGN	0	genome.wustl.edu	37	chr9	95147960	95147960	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	taaaactgtttggatgctttCccaggacgattggattgccc	10	9	0	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	95147960	95147960	C	G	SNP	OGN	ENST00000262551	human	ensembl	69_37n	-1	known	missense	c.839	p.G280A	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OGN	HGNC	ENSG00000106809	203	0	0	170	60	26.09	-	-	-	G	95147960	C	G	95147960	3	3	22	1	0	0	0	0	1	0	0	0	10919	855	30	2	61	2	OGN	9	95147960	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	59473670	95147960	46065471	15	1185										
ITGB1	0	genome.wustl.edu	37	chr10	33217185	33217185	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	aattttaatgtaaatgtctgTggctcccctaattagacaag	7	7	1	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	10	33217185	33217185	T	C	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	silent	c.384	p.P128	0.215	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	106	0	0	65	25	27.78	-	-	-	C	33217185	T	C	33217185	2	2	22	1	0	0	0	0	0	0	0	1	7944	1683	59	5		5	ITGB1	10	33217185	Silent	SNP	T	TCGA-A2-A04X-01A-21W-A050-09		33217185	102317562	16	1186										
PDE3B	0	genome.wustl.edu	37	chr11	14666376	14666377	+	Frame_Shift_Ins	INS	-	-	G													0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ccgctgctctccggcctggtINSggggggcgctggctgcctgc							TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	11	14666376	14666377	-	G	INS	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	frame_shift_ins	c.755_756	p.A255fs	0.719:0.721	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	21	0	0	21	3	12.5	-	-	-	G	14666377	-	G	14666376	7	5	22	1	0	1	1	0	0	0	0	0	11711	1696	59	0	757	0	PDE3B	11	14666376	Frame_Shift_Ins	INS	-	TCGA-A2-A04X-01A-21W-A050-09		14666376	120340140	17	1187										
WIF1	0	genome.wustl.edu	37	chr12	65514331	65514331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	aacaatcaggatatcttcttCaaatcctggtttttaaaata	4	7	4	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	65514331	65514331	C	T	SNP	WIF1	ENST00000286574	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	1.000	pfam_WIF,smart_WIF,pfscan_WIF,prints_Wnt-inh	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EGF-like,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	68	0	0	67	31	31.63	-	-	-	T	65514331	C	T	65514331	3	4	22	1	0	0	0	0	1	0	0	0	17463	835	29	2	1021	2	WIF1	12	65514331	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09		65514331	68337564	18	1188										
EEA1	0	genome.wustl.edu	37	chr12	93226389	93226389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	tagatgctggtacttggtctCtacctcagataattcttctt	7	9	4	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	93226389	93226389	C	G	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385Q	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	106	0	0	100	33	24.81	-	-	-	G	93226389	C	G	93226389	3	3	22	1	0	0	0	0	1	0	0	0	4956	922	32	2	3158	2	EEA1	12	93226389	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	27712058	93226389	40625506	19	1189										
CYSLTR2	0	genome.wustl.edu	37	chr13	49281015	49281015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	atcagaaatggaaccaaatgGcaccttcagcaataacaaca	6	10	2	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	13	49281015	49281015	G	A	SNP	CYSLTR2	ENST00000282018	human	ensembl	69_37n	1	known	missense	c.62	p.G21D	0.000	prints_CLT2_recept	pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_CLT2_recept,prints_Cyst_leuk_rcpt,prints_P2_purnocptor,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR2	HGNC	ENSG00000152207	100	0	0	88	19	17.76	-	-	-	A	49281015	G	A	49281015	3	1	22	1	0	0	0	0	1	0	0	0	4233	1203	42	4	64	4	CYSLTR2	13	49281015	Missense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		49281015	65888863	20	1190										
IPO4	0	genome.wustl.edu	37	chr14	24656970	24656970	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cctttcgaaaaatggtggctGagagctgggccaggctgagg	16	8	0	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	24656970	24656970	G	A	SNP	IPO4	ENST00000354464	human	ensembl	69_37n	-1	known	missense	c.311	p.S104L	0.889	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497	78	0	0	33	13	28.26	-	-	-	A	24656970	G	A	24656970	3	1	22	1	0	0	0	0	1	0	0	0	7849	1294	45	2	3038	2	IPO4	14	24656970	Missense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		24656970	82692570	21	1191										
FANCM	0	genome.wustl.edu	37	chr14	45658083	45658085	+	In_Frame_Del	DEL	GAA	GAA	-													0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cttgcaaaggccaatcaagtGaagaagaagtttgtgttgat							TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	45658083	45658085	GAA	-	DEL	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	in_frame_del	c.4858_4860	p.E1622in_frame_del	1.000:0.998:0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	111	0	0	87	22	20.18	-	-	-	-	45658085	GAA	-	45658083	7	5	22	1	0	1	0	1	0	0	0	0	5717	1291	45	0	4936	0	FANCM	14	45658083	In_Frame_Del	DEL	GAA	TCGA-A2-A04X-01A-21W-A050-09	21001113	45658083	61691457	22	1192										
ZNF213	0	genome.wustl.edu	37	chr16	3191255	3191255	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	cacaccggtgagcggcccttCggctgcggagagtgcgacaa	15	13	0	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	3191255	3191255	C	T	SNP	ZNF213	ENST00000396878	human	ensembl	69_37n	1	known	silent	c.1287	p.F429	0.314	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF213	HGNC	ENSG00000085644	42	0	0	25	10	28.57	-	-	-	T	3191255	C	T	3191255	2	4	22	1	0	0	0	0	0	0	0	1	17865	883	31	1		1	ZNF213	16	3191255	Silent	SNP	C	TCGA-A2-A04X-01A-21W-A050-09		3191255	87163498	23	1193										
DNAH3	0	genome.wustl.edu	37	chr16	20974834	20974834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ccaagacccagggagttgctCctcatggggccaggccgagt	14	13	1	1			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	20974834	20974834	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.10372	p.E3458K	0.166	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	405	0	0	200	47	18.95	-	-	-	T	20974834	C	T	20974834	3	4	22	1	0	0	0	0	1	0	0	0	4639	864	30	2	2017	2	DNAH3	16	20974834	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	17783579	20974834	69379919	24	1194										
VPS53	0	genome.wustl.edu	37	chr17	559191	559191	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	atatcacgggtgatttctttCacctaaacattgaaaaacca	5	9	3	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	559191	559191	C	T	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	silent	c.375	p.V125	0.922	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	354	0	0	216	90	29.41	-	-	-	T	559191	C	T	559191	2	4	22	1	0	0	0	0	0	0	0	1	17312	813	29	2		2	VPS53	17	559191	Silent	SNP	C	TCGA-A2-A04X-01A-21W-A050-09		559191	80636019	25	1195										
SARM1	0	genome.wustl.edu	37	chr17	26723195	26723195	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ggtggtcccacgaataccagGaggccaccattgagaagatc	12	11	0	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	26723195	26723195	G	T	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	nonsense	c.1963	p.E655*	1.000	smart_TIR_dom	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	216	0	0	110	34	23.61	-	-	-	T	26723195	G	T	26723195	4	4	22	1	0	0	0	0	0	1	0	0	13929	1175	41	2	2097	2	SARM1	17	26723195	Nonsense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09	26164004	26723195	54472015	26	1196										
DNAH17	0	genome.wustl.edu	37	chr17	76556902	76556902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ccccaggttaaagtggcagtCctggtccacgcccgccaccc	10	18	0	0			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	76556902	76556902	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.1951	p.D651Y	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	43	0	0	22	7	24.14	-	-	-	A	76556902	C	A	76556902	3	1	22	1	0	0	0	0	1	0	0	0	4637	855	30	2	11713	2	DNAH17	17	76556902	Missense_Mutation	SNP	C	TCGA-A2-A04X-01A-21W-A050-09	49833707	76556902	4638308	27	1197										
ZHX3	0	genome.wustl.edu	37	chr20	39831958	39831958	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	ttccgcacctctctggtactGaggcccgtcacttttgtgag	10	13	2	2			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	20	39831958	39831958	G	A	SNP	ZHX3	ENST00000421422	human	ensembl	69_37n	-1	novel	nonsense	c.724	p.Q242*	0.949	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZHX3	HGNC	ENSG00000174306	218	0	0	143	39	21.2	-	-	-	A	39831958	G	A	39831958	4	1	22	1	0	0	0	0	0	1	0	0	17773	1277	45	2	1279	2	ZHX3	20	39831958	Nonsense_Mutation	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		39831958	23193562	28	1198										
SHROOM4	0	genome.wustl.edu	37	chrX	50376535	50376535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.310344827586207	9	0.00573397257573109	3.28378378378378	2.91891891891892	3.40540540540541	0.0566844919786096	0.402989063857274	6	tctgactgaaggggtgacatGgaatgatatgattggtctgt	14	4	2	5			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	X	50376535	50376535	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.2538	p.S846	0.936	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	305	0	0	148	52	25.87	-	-	-	A	50376535	G	A	50376535	2	1	22	1	0	0	0	0	0	0	0	1	14385	1335	47	4		4	SHROOM4	23	50376535	Silent	SNP	G	TCGA-A2-A04X-01A-21W-A050-09		50376535	104894025	29	1199										
DVL1	0	genome.wustl.edu	37	chr1	1275142	1275142	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tgggaaacgatctcccgcagCacccgcacggcatcgtcatt	10	15	2	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	1275142	1275142	C	A	SNP	DVL1	ENST00000378888	human	ensembl	69_37n	-1	known	silent	c.960	p.V320	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_1,prints_Dishevelled	-	no_errors	DVL1	HGNC	ENSG00000107404	18	0	0	15	6	28.57	-	-	-	A	1275142	C	A	1275142	2	1	23	1	0	0	0	0	0	0	0	1	4870	697	25	4		4	DVL1	1	1275142	Silent	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		1275142	247975479	1	1200										
TMCO4	0	genome.wustl.edu	37	chr1	20027296	20027297	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tgatcctcccggacaccaccINSttccggaaaggctcccaatg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	20027296	20027297	-	G	INS	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1347_1346	p.K449fs	1.000:1.000	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	77	0	0	50	24	32.43	-	-	-	G	20027297	-	G	20027296	7	5	23	1	0	1	1	0	0	0	0	0	16093	680	24	0	569	0	TMCO4	1	20027296	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09	18752154	20027296	229223325	2	1201										
CSMD2	0	genome.wustl.edu	37	chr1	34011643	34011644	+	Frame_Shift_Ins	INS	-	-	TG													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tcacatacattacctccacaINSctcaggctgcgagccgctcc							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	34011643	34011644	-	TG	INS	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	frame_shift_ins	c.9094_9093	p.C3031fs	1.000:1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	62	0	0	39	48	55.17	-	-	-	TG	34011644	-	TG	34011643	7	5	23	1	0	1	1	0	0	0	0	0	3977	159	6	0	1857	0	CSMD2	1	34011643	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09	13984347	34011643	215238978	3	1202	8	2								
CSMD2	0	genome.wustl.edu	37	chr1	34011645	34011646	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	acatacattacctccacactINScaggctgcgagccgctccac							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	34011645	34011646	-	C	INS	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	frame_shift_ins	c.9092_9091	p.E3031fs	1.000:1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	65	0	0	38	49	56.32	-	-	-	C	34011646	-	C	34011645	7	5	23	1	0	1	1	0	0	0	0	0	3977	1551	54	0	1859	0	CSMD2	1	34011645	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09	2	34011645	215238976	4	1203	8	2								
NT5C1A	0	genome.wustl.edu	37	chr1	40124845	40124846	+	Frame_Shift_Del	DEL	GC	GC	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cagtccgccggggtgtctgtGccacaccataaggcacatgg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	40124845	40124846	GC	-	DEL	NT5C1A	ENST00000235628	human	ensembl	69_37n	-1	known	frame_shift_del	c.1055_1054	p.A352fs	1.000:1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981	45	0	0	27	27	50	-	-	-	-	40124846	GC	-	40124845	7	5	23	1	0	1	0	1	0	0	0	0	10758	1319	46	0	55	0	NT5C1A	1	40124845	Frame_Shift_Del	DEL	GC	TCGA-A2-A04Y-01A-21W-A050-09	6113200	40124845	209125776	5	1204										
C1orf50	0	genome.wustl.edu	37	chr1	43232996	43232996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cgctgtcatggaggacgccgCcgcgccggggcggaccgagg	19	14	1	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	43232996	43232996	C	T	SNP	C1orf50	ENST00000372525	human	ensembl	69_37n	1	known	missense	c.14	p.A5V	0.000	NULL	pfam_DUF2452,superfamily_Cytidine_deaminase-like	-	no_errors	C1orf50	HGNC	ENSG00000164008	35	0	0	9	6	40	-	-	-	T	43232996	C	T	43232996	3	4	23	1	0	0	0	0	1	0	0	0	2062	739	26	4	16	4	C1orf50	1	43232996	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	3108151	43232996	206017625	6	1205										
NBPF14	0	genome.wustl.edu	37	chr1	148017589	148017589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gtacgaggccaacatttcagGaggaattgagagagtcgaat	13	6	1	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	148017589	148017589	G	A	SNP	NBPF14	ENST00000369219	human	ensembl	69_37n	-1	known	missense	c.694	p.P232S	0.001	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	1044	1	0.1	649	235	26.49	-	-	-	A	148017589	G	A	148017589	3	1	23	1	0	0	0	0	1	0	0	0	10266	1174	41	2	2139	2	NBPF14	1	148017589	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09	104784593	148017589	101233032	7	1206										
NES	0	genome.wustl.edu	37	chr1	156639945	156639945	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ccctcctccttttctgagggTggggcctcaaggccctcgga	12	15	2	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	156639945	156639945	T	G	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	silent	c.4035	p.P1345	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	55	0	0	29	7	19.44	-	-	-	G	156639945	T	G	156639945	2	3	23	1	0	0	0	0	0	0	0	1	10409	1683	59	5		5	NES	1	156639945	Silent	SNP	T	TCGA-A2-A04Y-01A-21W-A050-09	8622356	156639945	92610676	8	1207										
WDR64	0	genome.wustl.edu	37	chr1	241823900	241823900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gtccagatgtgaagaatcaaGatgtgaaacgcttttacagg	11	6	1	5			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	1	241823900	241823900	G	C	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	missense	c.214	p.D72H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	200	0	0	163	232	58.44	-	-	-	C	241823900	G	C	241823900	3	2	23	1	0	0	0	0	1	0	0	0	17412	942	33	2	220	2	WDR64	1	241823900	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09	85183955	241823900	7426721	9	1208										
PXDN	0	genome.wustl.edu	37	chr2	1684022	1684023	+	Frame_Shift_Ins	INS	-	-	AT													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cgtccctggatgcgtctgggINSatattcacagatggccgctg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	2	1684022	1684023	-	AT	INS	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	frame_shift_ins	c.673_672	p.P224fs	0.996:0.310	smart_Cys-rich_flank_reg_C	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	161	0	0	115	32	21.77	-	-	-	AT	1684023	-	AT	1684022	7	5	23	1	0	1	1	0	0	0	0	0	12930	1174	41	0	3834	0	PXDN	2	1684022	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09		1684022	241515351	10	1209										
RGPD4	0	genome.wustl.edu	37	chr2	108496541	108496541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ggaagcagaggcaaccagtgCagtccttatggagcaaatta	12	8	0	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	2	108496541	108496541	C	A	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.5042	p.A1681E	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	573	1	0.17	449	57	11.26	-	-	-	A	108496541	C	A	108496541	3	1	23	1	0	0	0	0	1	0	0	0	13371	710	25	4	5124	4	RGPD4	2	108496541	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	106812519	108496541	134702832	11	1210										
NEB	0	genome.wustl.edu	37	chr2	152420119	152420119	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ttaaagtggacatttacttaCcgcactcctcatcttttgga	6	10	2	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	2	152420119	152420119	C	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	splice_site	c.18693+1	e117+1	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091	306	2	0.65	196	84	30	-	-	-	A	152420119	C	A	152420119	5	1	23	1	0	0	0	0	0	0	1	0	10374	521	18	4	7248	4	NEB	2	152420119	Splice_Site	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	43923578	152420119	90779254	12	1211										
CALCRL	0	genome.wustl.edu	37	chr2	188211077	188211077	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ctgagttggaaaagctgtttCcaaattggattttgtattga	10	4	0	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	2	188211077	188211077	C	G	SNP	CALCRL	ENST00000392370	human	ensembl	69_37n	-1	known	missense	c.1220	p.G407A	1.000	prints_GPCR_2_CGRP1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989	148	0	0	97	44	31.21	-	-	-	G	188211077	C	G	188211077	3	3	23	1	0	0	0	0	1	0	0	0	2605	855	30	2	169	2	CALCRL	2	188211077	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	35790958	188211077	54988296	13	1212										
HRH1	0	genome.wustl.edu	37	chr3	11301157	11301157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tcgtaccaagacccgagcctCggccaccattctgggggcct	11	16	1	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	3	11301157	11301157	C	T	SNP	HRH1	ENST00000397056	human	ensembl	69_37n	1	known	missense	c.434	p.S145L	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H1_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH1	HGNC	ENSG00000196639	78	0	0	42	14	24.56	-	-	-	T	11301157	C	T	11301157	3	4	23	1	0	0	0	0	1	0	0	0	7406	893	31	1	436	1	HRH1	3	11301157	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		11301157	186721273	14	1213										
KIAA0232	0	genome.wustl.edu	37	chr4	6863013	6863013	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	caggctcaagttccagtgggAatcagggagaattaaaagca							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	4	6863013	6863013	A	-	DEL	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	frame_shift_del	c.904	p.N302fs	0.896	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	54	0	0	46	6	11.54	-	-	-	-	6863013	A	-	6863013	7	5	23	1	0	1	0	1	0	0	0	0	8215	246	9	0	922	0	KIAA0232	4	6863013	Frame_Shift_Del	DEL	A	TCGA-A2-A04Y-01A-21W-A050-09		6863013	184291263	15	1214										
LDB2	0	genome.wustl.edu	37	chr4	16597371	16597371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tgggtgaccatggtacactgGtcgcagtccaccgtgatgga	14	10	0	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	4	16597371	16597371	G	T	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.363	p.D121E	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	153	0	0	69	32	31.68	-	-	-	T	16597371	G	T	16597371	3	4	23	1	0	0	0	0	1	0	0	0	8750	1252	44	4	891	4	LDB2	4	16597371	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09	9734358	16597371	174556905	16	1215										
CCNO	0	genome.wustl.edu	37	chr5	54528374	54528374	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	acagcgggattccgccgtcaCctgccgggaaggagggggga							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	5	54528374	54528374	C	-	DEL	CCNO	ENST00000282572	human	ensembl	69_37n	-1	known	frame_shift_del	c.382	p.V128fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNO	HGNC	ENSG00000152669	16	0	0	9	6	40	-	-	-	-	54528374	C	-	54528374	7	5	23	1	0	1	0	1	0	0	0	0	2962	521	18	0	678	0	CCNO	5	54528374	Frame_Shift_Del	DEL	C	TCGA-A2-A04Y-01A-21W-A050-09		54528374	126386886	17	1216										
TIAM2	0	genome.wustl.edu	37	chr6	155571033	155571035	+	In_Frame_Del	DEL	AGA	AGA	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gagccacatcaatgagatgcAgaagatctatgaggattatg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	6	155571033	155571035	AGA	-	DEL	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	in_frame_del	c.3881_3883	p.K1295in_frame_del	1.000:1.000:1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	144	0	0	92	23	19.66	-	-	-	-	155571035	AGA	-	155571033	7	5	23	1	0	1	0	1	0	0	0	0	15986	188	7	0	3951	0	TIAM2	6	155571033	In_Frame_Del	DEL	AGA	TCGA-A2-A04Y-01A-21W-A050-09		155571033	15544034	18	1217										
HEPACAM2	0	genome.wustl.edu	37	chr7	92844993	92844994	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tgcaccactggctttgtgacINSaggatctgcaatattaagag							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	7	92844993	92844994	-	T	INS	HEPACAM2	ENST00000394468	human	ensembl	69_37n	-1	known	frame_shift_ins	c.436_435	p.V145fs	1.000:0.997	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	142	0	0	204	26	11.3	-	-	-	T	92844994	-	T	92844993	7	5	23	1	0	1	1	0	0	0	0	0	7104	478	17	0	984	0	HEPACAM2	7	92844993	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09		92844993	66293670	19	1218										
CALU	0	genome.wustl.edu	37	chr7	128388708	128388708	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cttgagcaaacccacagaaaAgaaggaccgtgtacatcatg	9	10	1	3			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	7	128388708	128388708	A	G	SNP	CALU	ENST00000542996	human	ensembl	69_37n	1	known	missense	c.95	p.K32R	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALU	HGNC	ENSG00000128595	95	0	0	60	27	31.03	-	-	-	G	128388708	A	G	128388708	3	3	23	1	0	0	0	0	1	0	0	0	2619	72	3	5	73	5	CALU	7	128388708	Missense_Mutation	SNP	A	TCGA-A2-A04Y-01A-21W-A050-09	35543715	128388708	30749955	20	1219										
EGR3	0	genome.wustl.edu	37	chr8	22548865	22548865	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	atgttgtcctggcaccagttGgaaggggagtcgaaggcgaa							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	8	22548865	22548865	G	-	DEL	EGR3	ENST00000317216	human	ensembl	69_37n	-1	known	frame_shift_del	c.285	p.N96fs	1.000	pfam_DUF3446	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388	32	0	0	8	10	52.63	-	-	-	-	22548865	G	-	22548865	7	5	23	1	0	1	0	1	0	0	0	0	5008	1335	47	0	882	0	EGR3	8	22548865	Frame_Shift_Del	DEL	G	TCGA-A2-A04Y-01A-21W-A050-09		22548865	123815157	21	1220										
ENPP2	0	genome.wustl.edu	37	chr8	120594788	120594788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	aggtattagtgcgcaggagaTgattcaaacttccatgggtc	12	7	1	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	8	120594788	120594788	T	C	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1754	p.H585R	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	143	0	0	144	32	18.18	-	-	-	C	120594788	T	C	120594788	3	2	23	1	0	0	0	0	1	0	0	0	5167	1464	51	5	1104	5	ENPP2	8	120594788	Missense_Mutation	SNP	T	TCGA-A2-A04Y-01A-21W-A050-09	98045923	120594788	25769234	22	1221										
APBA1	0	genome.wustl.edu	37	chr9	72047583	72047584	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gctattccccctcgcatgagINSgctgcagatctgccagagtc							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	9	72047583	72047584	-	A	INS	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2311_2310	p.L770fs	1.000:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	139	0	0	48	25	34.25	-	-	-	A	72047584	-	A	72047583	7	5	23	1	0	1	1	0	0	0	0	0	757	1000	35	0	210	0	APBA1	9	72047583	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09		72047583	69165848	23	1222	9	2								
APBA1	0	genome.wustl.edu	37	chr9	72047585	72047586	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tattccccctcgcatgaggcINStgcagatctgccagagtcaa							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	9	72047585	72047586	-	T	INS	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2309_2308	p.S770fs	1.000:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	137	0	0	41	25	37.88	-	-	-	T	72047586	-	T	72047585	7	5	23	1	0	1	1	0	0	0	0	0	757	797	28	0	212	0	APBA1	9	72047585	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09	2	72047585	69165846	24	1223	9	2								
NOL8	0	genome.wustl.edu	37	chr9	95077554	95077554	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tcttcactgctactggagtgAgagggagatttacgattaag	12	6	2	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	9	95077554	95077554	A	C	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	silent	c.1353	p.S451	0.001	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	139	0	0	62	36	36.36	-	-	-	C	95077554	A	C	95077554	2	2	23	1	0	0	0	0	0	0	0	1	10599	291	11	5		5	NOL8	9	95077554	Silent	SNP	A	TCGA-A2-A04Y-01A-21W-A050-09	23029969	95077554	46135877	25	1224										
TNC	0	genome.wustl.edu	37	chr9	117838681	117838681	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gagctcacctgtgagtgtggTtttggttgtggcttgttggc	16	6	1	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	9	117838681	117838681	T	C	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.2848	p.T950A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	366	0	0	248	73	22.46	-	-	-	C	117838681	T	C	117838681	3	2	23	1	0	0	0	0	1	0	0	0	16365	1725	60	5	3841	5	TNC	9	117838681	Missense_Mutation	SNP	T	TCGA-A2-A04Y-01A-21W-A050-09	22761127	117838681	23374750	26	1225										
CAMSAP1	0	genome.wustl.edu	37	chr9	138710894	138710894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	agctccacctccgcttccagCtgctgcttgcgcacgcgggc	11	18	0	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	9	138710894	138710894	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.3954	p.Q1318H	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	36	0	0	11	4	26.67	-	-	-	A	138710894	C	A	138710894	3	1	23	1	0	0	0	0	1	0	0	0	2636	796	28	4	911	4	CAMSAP1	9	138710894	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	20872213	138710894	2502537	27	1226										
PIP4K2A	0	genome.wustl.edu	37	chr10	22880688	22880688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cctgggagtcgttggggaggGgtgcgctcctggtcagggaa	20	8	1	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	10	22880688	22880688	G	T	SNP	PIP4K2A	ENST00000376573	human	ensembl	69_37n	-1	known	missense	c.362	p.P121H	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867	118	0	0	61	27	30.34	-	-	-	T	22880688	G	T	22880688	3	4	23	1	0	0	0	0	1	0	0	0	12010	1232	43	4	886	4	PIP4K2A	10	22880688	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09		22880688	112654059	28	1227										
ATHL1	0	genome.wustl.edu	37	chr11	289844	289844	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	acgccggcgaggaccccaccAcgtttgctgcccactctctg	10	18	1	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	11	289844	289844	A	C	SNP	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	missense	c.28	p.T10P	0.000	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	21	0	0	19	4	17.39	-	-	-	C	289844	A	C	289844	3	2	23	1	0	0	0	0	1	0	0	0	1108	159	6	5	30	5	ATHL1	11	289844	Missense_Mutation	SNP	A	TCGA-A2-A04Y-01A-21W-A050-09		289844	134716672	29	1228										
SOX6	0	genome.wustl.edu	37	chr11	16007966	16007966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	acattgatttccagcgagatCctagaaataaaaatagcctt	6	8	0	3			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	11	16007966	16007966	C	T	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.1967	p.G656E	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	120	0	0	158	47	22.93	-	-	-	T	16007966	C	T	16007966	3	4	23	1	0	0	0	0	1	0	0	0	15044	869	30	2	527	2	SOX6	11	16007966	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09	15718122	16007966	118998550	30	1229										
NXF1	0	genome.wustl.edu	37	chr11	62572890	62572890	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	acgccggcaaacaacctaacTcccaagcgctcaggaccgaa	8	16	1	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	11	62572890	62572890	T	C	SNP	NXF1	ENST00000526163	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NXF1	HGNC	ENSG00000162231	31	0	0	14	6	30	-	-	-	C	62572890	T	C	62572890	1	2	23	0	1	0	0	0	0	0	0	0	10855	1566	54	5		5	NXF1	11	62572890	RNA	SNP	T	TCGA-A2-A04Y-01A-21W-A050-09	46564924	62572890	72433626	31	1230										
IPO8	0	genome.wustl.edu	37	chr12	30822138	30822138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	aaatttcatccttatatactCatatggatcttcttgccaca	3	10	4	0			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	12	30822138	30822138	C	G	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.1123	p.E375Q	1.000	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	163	0	0	128	114	46.91	-	-	-	G	30822138	C	G	30822138	3	3	23	1	0	0	0	0	1	0	0	0	7852	835	29	2	2054	2	IPO8	12	30822138	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		30822138	103029757	32	1231										
GALNT6	0	genome.wustl.edu	37	chr12	51751160	51751160	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ccgccaaggccgtggcaggaGtacatgatgaggggcttccc							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	12	51751160	51751160	G	-	DEL	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	frame_shift_del	c.1575	p.S526fs	0.082	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	113	0	0	56	40	41.24	-	-	-	-	51751160	G	-	51751160	7	5	23	1	0	1	0	1	0	0	0	0	6267	1024	36	0	305	0	GALNT6	12	51751160	Frame_Shift_Del	DEL	G	TCGA-A2-A04Y-01A-21W-A050-09	20929022	51751160	82100735	33	1232	10	2								
GALNT6	0	genome.wustl.edu	37	chr12	51751164	51751164	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	caaggccgtggcaggagtacAtgatgaggggcttccccccg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	12	51751164	51751164	A	-	DEL	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	frame_shift_del	c.1571	p.M524fs	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	118	0	0	55	42	42	-	-	-	-	51751164	A	-	51751164	7	5	23	1	0	1	0	1	0	0	0	0	6267	217	8	0	309	0	GALNT6	12	51751164	Frame_Shift_Del	DEL	A	TCGA-A2-A04Y-01A-21W-A050-09	4	51751164	82100731	34	1233	10	2								
NR1H4	0	genome.wustl.edu	37	chr12	100928730	100928730	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	aaaatgtgaagcagcatgcaGatcagaccgtgaatgaagac	11	7	1	6			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	12	100928730	100928730	G	C	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	missense	c.691	p.D231H	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	97	0	0	72	39	35.14	-	-	-	C	100928730	G	C	100928730	3	2	23	1	0	0	0	0	1	0	0	0	10692	942	33	2	663	2	NR1H4	12	100928730	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09	49177566	100928730	32923165	35	1234										
ADPRHL1	0	genome.wustl.edu	37	chr13	114088101	114088101	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ggccgcactccacgctgaccTcgatgagggtctccagccgc							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	13	114088101	114088101	T	-	DEL	ADPRHL1	ENST00000375418	human	ensembl	69_37n	-1	known	frame_shift_del	c.461	p.E154fs	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRHL1	HGNC	ENSG00000153531	11	0	0	7	5	41.67	-	-	-	-	114088101	T	-	114088101	7	5	23	1	0	1	0	1	0	0	0	0	332	1551	54	0	623	0	ADPRHL1	13	114088101	Frame_Shift_Del	DEL	T	TCGA-A2-A04Y-01A-21W-A050-09		114088101	1081777	36	1235										
AP1G2	0	genome.wustl.edu	37	chr14	24035597	24035597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	caaagtgcacaaggccaggcCttgtactggctgaatcccct	10	13	0	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	14	24035597	24035597	C	T	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.361	p.G121S	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	180	0	0	108	27	20	-	-	-	T	24035597	C	T	24035597	3	4	23	1	0	0	0	0	1	0	0	0	734	681	24	4	2072	4	AP1G2	14	24035597	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		24035597	83313943	37	1236										
BDKRB2	0	genome.wustl.edu	37	chr14	96707798	96707798	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gacctccatctccgtggaacGccagattcacaaactgcagg	9	14	2	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	14	96707798	96707798	G	T	SNP	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	missense	c.1133	p.R378L	0.001	prints_B2_bradkn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	75	0	0	41	19	31.15	-	-	-	T	96707798	G	T	96707798	3	4	23	1	0	0	0	0	1	0	0	0	1397	1087	38	3	1139	3	BDKRB2	14	96707798	Missense_Mutation	SNP	G	TCGA-A2-A04Y-01A-21W-A050-09	72672201	96707798	10641742	38	1237										
DYNC1LI2	0	genome.wustl.edu	37	chr16	66766320	66766320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ttttatgaacaatatacttaTacaacaagtcgaggtttttc	5	6	0	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	16	66766320	66766320	T	C	SNP	DYNC1LI2	ENST00000258198	human	ensembl	69_37n	-1	known	missense	c.851	p.Y284C	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720	138	1	0.72	89	31	25.83	-	-	-	C	66766320	T	C	66766320	3	2	23	1	0	0	0	0	1	0	0	0	4880	1406	49	5	655	5	DYNC1LI2	16	66766320	Missense_Mutation	SNP	T	TCGA-A2-A04Y-01A-21W-A050-09		66766320	23588433	39	1238										
C16orf48	0	genome.wustl.edu	37	chr16	67697662	67697663	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	cagtgagcaggaatgcctccINSggggggctctcttggcagct							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	16	67697662	67697663	-	G	INS	C16orf48	ENST00000243878	human	ensembl	69_37n	-1	known	frame_shift_ins	c.641_640	p.R214fs	1.000:1.000	NULL	NULL	-	no_errors	C16orf48	HGNC	ENSG00000124074	35	0	0	27	3	10	-	-	-	G	67697663	-	G	67697662	7	5	23	1	0	1	1	0	0	0	0	0	1829	652	23	0	411	0	C16orf48	16	67697662	Frame_Shift_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09	931342	67697662	22657091	40	1239										
BANP	0	genome.wustl.edu	37	chr16	88066806	88066806	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	tacgcgctggccaacgcacaGcaggtgcagatccaccagat							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	16	88066806	88066806	G	-	DEL	BANP	ENST00000286122	human	ensembl	69_37n	1	known	frame_shift_del	c.1131	p.Q377fs	1.000	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530	47	0	0	39	26	39.39	-	-	-	-	88066806	G	-	88066806	7	5	23	1	0	1	0	1	0	0	0	0	1314	962	34	0	1203	0	BANP	16	88066806	Frame_Shift_Del	DEL	G	TCGA-A2-A04Y-01A-21W-A050-09	20369144	88066806	2287947	41	1240										
P2RX5	0	genome.wustl.edu	37	chr17	3592830	3592830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	gctcccggcccagcggatcaCggagcccagtcggaagatgg	15	14	1	1			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	17	3592830	3592830	C	T	SNP	P2RX5	ENST00000435558	human	ensembl	69_37n	-1	known	missense	c.709	p.V237M	0.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454	56	0	0	15	8	34.78	-	-	-	T	3592830	C	T	3592830	3	4	23	1	0	0	0	0	1	0	0	0	11416	536	19	1	583	1	P2RX5	17	3592830	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		3592830	77602380	42	1241										
RNF213	0	genome.wustl.edu	37	chr17	78346457	78346457	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	caacgaggcctcggttgaatAcctgcaagaggtggcccgga	14	11	0	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	17	78346457	78346457	A	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.12674	p.Y4225S	0.998	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	33	0	0	25	6	18.75	-	-	-	C	78346457	A	C	78346457	3	2	23	1	0	0	0	0	1	0	0	0	13563	391	14	5	13179	5	RNF213	17	78346457	Missense_Mutation	SNP	A	TCGA-A2-A04Y-01A-21W-A050-09	74753627	78346457	2848753	43	1242										
TCEB3B	0	genome.wustl.edu	37	chr18	44559482	44559483	+	In_Frame_Ins	INS	-	-	TAT													0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	ccgcgggcgccgcgtgctcaINSttgctgctgctcaggcaggg							TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	18	44559482	44559483	-	TAT	INS	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	in_frame_ins	c.2154_2153	p.N718in_frame_insKY	0.000:0.057	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	80	0	0	62	48	43.64	-	-	-	TAT	44559483	-	TAT	44559482	7	5	23	1	0	1	1	0	0	0	0	0	15777	214	8	0	111	0	TCEB3B	18	44559482	In_Frame_Ins	INS	-	TCGA-A2-A04Y-01A-21W-A050-09		44559482	33517766	44	1243										
CPXCR1	0	genome.wustl.edu	37	chrX	88008777	88008777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.344894097038568	2.43356643356643	6.69230769230769	0	0.1	0.5224358974359	0	agggaaagttgagatgaaagCaaacaatttccccataaatc	8	7	0	2			TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3669bbbd-2e75-4b57-a5a8-8eebc25a97c2	f2467587-34f3-406d-8b3a-143c1bb52667	X	88008777	88008777	C	T	SNP	CPXCR1	ENST00000276127	human	ensembl	69_37n	1	known	missense	c.362	p.A121V	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183	110	0	0	107	32	23.02	-	-	-	T	88008777	C	T	88008777	3	4	23	1	0	0	0	0	1	0	0	0	3866	710	25	4	364	4	CPXCR1	23	88008777	Missense_Mutation	SNP	C	TCGA-A2-A04Y-01A-21W-A050-09		88008777	67261783	45	1244										
EPHB2	0	genome.wustl.edu	37	chr1	23191665	23191665	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	actgaccagagccccttctcGcctcagttcgcctctgtgaa	8	16	3	3			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	1	23191665	23191665	G	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	silent	c.1263	p.S421	0.059	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	25	0	0	29	4	12.12	-	-	-	T	23191665	G	T	23191665	2	4	24	1	0	0	0	0	0	0	0	1	5212	1074	38	3		3	EPHB2	1	23191665	Silent	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		23191665	226058956	1	1245										
PPP1R8	0	genome.wustl.edu	37	chr1	28169800	28169801	+	Frame_Shift_Ins	INS	-	-	A													0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	aagaggaagaggaagaactcINSacgggtgacattcagtgagg							TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	1	28169800	28169801	-	A	INS	PPP1R8	ENST00000311772	human	ensembl	69_37n	1	known	frame_shift_ins	c.596_597	p.R200fs	0.999:0.011	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	PPP1R8	HGNC	ENSG00000117751	26	0	0	34	23	40.35	-	-	-	A	28169801	-	A	28169800	7	5	24	1	0	1	1	0	0	0	0	0	12454	838	29	0	614	0	PPP1R8	1	28169800	Frame_Shift_Ins	INS	-	TCGA-A2-A0CK-01A-11D-A228-09	4978135	28169800	221080821	2	1246										
AMY2B	0	genome.wustl.edu	37	chr1	104116891	104116891	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	ttttctactaggtaattgatCtgggtggtgagccaattaaa	10	5	2	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	1	104116891	104116891	C	T	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	silent	c.754	p.L252	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	128	0	0	107	20	15.75	-	-	-	T	104116891	C	T	104116891	2	4	24	1	0	0	0	0	0	0	0	1	595	912	32	2		2	AMY2B	1	104116891	Silent	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09	75947091	104116891	145133730	3	1247										
IGFN1	0	genome.wustl.edu	37	chr1	201177616	201177616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	tcgcacctcacaatggggccGcttctgggagccagtgggct	14	13	2	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	1	201177616	201177616	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.3595	p.A1199T	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	22	0	0	23	8	25.81	-	-	-	A	201177616	G	A	201177616	3	1	24	1	0	0	0	0	1	0	0	0	7644	1087	38	1	3637	1	IGFN1	1	201177616	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09	97060725	201177616	48073005	4	1248										
STAMBP	0	genome.wustl.edu	37	chr2	74074849	74074849	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	cctgtggtggacaggtccttGaaacctggagcactgagcaa	13	10	0	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	2	74074849	74074849	G	A	SNP	STAMBP	ENST00000339566	human	ensembl	69_37n	1	known	silent	c.711	p.L237	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBP	HGNC	ENSG00000124356	29	0	0	28	4	12.5	-	-	-	A	74074849	G	A	74074849	2	1	24	1	0	0	0	0	0	0	0	1	15341	1281	45	2		2	STAMBP	2	74074849	Silent	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		74074849	169124524	5	1249										
STAC	0	genome.wustl.edu	37	chr3	36484914	36484914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	gagtttacggagcaaaagtgCtgacaacttcttccagcgaa	10	9	1	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	3	36484914	36484914	C	T	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	missense	c.170	p.A57V	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	16	0	0	14	6	30	-	-	-	T	36484914	C	T	36484914	3	4	24	1	0	0	0	0	1	0	0	0	15330	797	28	4	176	4	STAC	3	36484914	Missense_Mutation	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09		36484914	161537516	6	1250										
CDKL2	0	genome.wustl.edu	37	chr4	76517381	76517381	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	atgattatagtttagttcagGcaaacggacatctgtcctgg	10	7	2	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	4	76517381	76517381	G	T	SNP	CDKL2	ENST00000307465	human	ensembl	69_37n	-1	novel	missense	c.1489	p.P497T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL2	HGNC	ENSG00000138769	34	0	0	34	5	12.82	-	-	-	T	76517381	G	T	76517381	3	4	24	1	0	0	0	0	1	0	0	0	3183	1218	42	4		4	CDKL2	4	76517381	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		76517381	114636895	7	1251										
TRIO	0	genome.wustl.edu	37	chr5	14287160	14287160	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	actaattttggcagttctaaAtttgaatttgaggtaacttc	7	5	1	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	5	14287160	14287160	A	G	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.528	p.K176	0.964	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	44	0	0	36	18	33.33	-	-	-	G	14287160	A	G	14287160	2	3	24	1	0	0	0	0	0	0	0	1	16648	98	4	5		5	TRIO	5	14287160	Silent	SNP	A	TCGA-A2-A0CK-01A-11D-A228-09		14287160	166628100	8	1252										
PCDHGA7	0	genome.wustl.edu	37	chr5	140764698	140764698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	tcgcactttgtgggcatggaCggggtgcaggctttcctgca	15	10	0	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	5	140764698	140764698	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	silent	c.2232	p.D744	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	35	0	0	23	12	34.29	-	-	-	T	140764698	C	T	140764698	2	4	24	1	0	0	0	0	0	0	0	1	11632	535	19	1		1	PCDHGA7	5	140764698	Silent	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09	126477538	140764698	40150562	9	1253										
PCDHGC4	0	genome.wustl.edu	37	chr5	140866201	140866201	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	gacccagactctggcttgaaTgcgcttatctcctactcact	7	14	3	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	5	140866201	140866201	T	C	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	silent	c.1461	p.N487	0.934	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	21	0	0	27	5	15.62	-	-	-	C	140866201	T	C	140866201	2	2	24	1	0	0	0	0	0	0	0	1	11643	1461	51	5		5	PCDHGC4	5	140866201	Silent	SNP	T	TCGA-A2-A0CK-01A-11D-A228-09	101503	140866201	40049059	10	1254										
GNE	0	genome.wustl.edu	37	chr9	36246269	36246269	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	tgaaggattcggatgttcatCaaggcagcagatgtggccag	14	7	2	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	9	36246269	36246269	C	T	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	silent	c.468	p.L156	1.000	pfam_UDP_GlcNAc_Epimerase_2,tigrfam_UDP-GlcNAc_Epase	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	30	0	0	24	12	33.33	-	-	-	T	36246269	C	T	36246269	2	4	24	1	0	0	0	0	0	0	0	1	6574	825	29	2		2	GNE	9	36246269	Silent	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09		36246269	104967162	11	1255										
ZNF462	0	genome.wustl.edu	37	chr9	109691404	109691404	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	gcagcctccaggaccatcagCgacaagcccaacaaagtgat	9	14	1	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	9	109691404	109691404	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.5211	p.S1737	0.591	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	20	0	0	21	13	38.24	-	-	-	T	109691404	C	T	109691404	2	4	24	1	0	0	0	0	0	0	0	1	18022	767	27	1		1	ZNF462	9	109691404	Silent	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09	73445135	109691404	31522027	12	1256										
GLB1L3	0	genome.wustl.edu	37	chr11	134179638	134179638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	acatatttcgggaagcactcGggcattgtcaccagctatgg	11	10	1	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	11	134179638	134179638	G	A	SNP	GLB1L3	ENST00000455971	human	ensembl	69_37n	1	known	missense	c.134	p.R45Q	0.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLB1L3	HGNC	ENSG00000166105	20	0	0	8	12	60	-	-	-	A	134179638	G	A	134179638	3	1	24	1	0	0	0	0	1	0	0	0	6482	1103	39	1	1122	1	GLB1L3	11	134179638	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		134179638	826878	13	1257										
STAT6	0	genome.wustl.edu	37	chr12	57501977	57501977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	ctccagccagtcacccagaaGatgccgcaggtgttggggaa	13	12	1	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	12	57501977	57501977	G	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.85	p.L29F	1.000	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	28	0	0	26	14	35	-	-	-	A	57501977	G	A	57501977	3	1	24	1	0	0	0	0	1	0	0	0	15361	942	33	2	2542	2	STAT6	12	57501977	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		57501977	76349918	14	1258										
RLTPR	0	genome.wustl.edu	37	chr16	67683046	67683046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	cggtccctgagacatgtggcGcttggaaggaacttcaacgt	13	10	1	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	16	67683046	67683046	G	A	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	silent	c.1659	p.A553	0.178	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	32	0	0	7	9	56.25	-	-	-	A	67683046	G	A	67683046	2	1	24	1	0	0	0	0	0	0	0	1	13480	1074	38	1		1	RLTPR	16	67683046	Silent	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		67683046	22671707	15	1259										
CDH1	0	genome.wustl.edu	37	chr16	68844244	68844244	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	tcatggaaggtgctcttccaGgtatatccactaatgagaat	9	8	2	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	16	68844244	68844244	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.832	p.G278*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	25	0	0	8	5	38.46	-	-	-	T	68844244	G	T	68844244	4	4	24	1	0	0	0	0	0	1	0	0	3124	1014	35	4	854	4	CDH1	16	68844244	Nonsense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09	1161198	68844244	21510509	16	1260										
CACNG5	0	genome.wustl.edu	37	chr17	64880774	64880774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	cgccatctccttccttttaaCggaggtaaagcccgtcaccc	7	16	2	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	17	64880774	64880774	C	T	SNP	CACNG5	ENST00000169565	human	ensembl	69_37n	1	known	missense	c.566	p.T189M	0.985	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429	70	0	0	83	33	28.45	-	-	-	T	64880774	C	T	64880774	3	4	24	1	0	0	0	0	1	0	0	0	2585	536	19	1	580	1	CACNG5	17	64880774	Missense_Mutation	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09		64880774	16314436	17	1261										
DNMT1	0	genome.wustl.edu	37	chr19	10265650	10265650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	aggaactccaccacaatcttGctgatgtagatcttctcctg	7	12	3	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	19	10265650	10265650	G	T	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.1575	p.S525R	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_Cytosine_MeTrfase1_RFD	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	44	0	0	33	4	10.81	-	-	-	T	10265650	G	T	10265650	3	4	24	1	0	0	0	0	1	0	0	0	4710	1310	46	4	3411	4	DNMT1	19	10265650	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09		10265650	48863333	18	1262										
C5AR1	0	genome.wustl.edu	37	chr19	47823398	47823398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	tcatcctgctcaacatgtacGccagcatcctgctcctggcc	7	17	2	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	19	47823398	47823398	G	A	SNP	C5AR1	ENST00000355085	human	ensembl	69_37n	1	known	missense	c.364	p.A122T	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C5A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C5A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt,prints_Frt_met_rcpt	-	no_errors	C5AR1	HGNC	ENSG00000197405	37	0	0	41	26	38.81	-	-	-	A	47823398	G	A	47823398	3	1	24	1	0	0	0	0	1	0	0	0	2302	1087	38	1	369	1	C5AR1	19	47823398	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09	37557748	47823398	11305585	19	1263										
GYS1	0	genome.wustl.edu	37	chr19	49490524	49490524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	cgcggtcgtaccacggcactCcgatgttgcaggtatcccag	12	14	0	0			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	19	49490524	49490524	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.419	p.G140E	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	43	0	0	60	35	36.84	-	-	-	T	49490524	C	T	49490524	3	4	24	1	0	0	0	0	1	0	0	0	6963	855	30	2	1850	2	GYS1	19	49490524	Missense_Mutation	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09	1667126	49490524	9638459	20	1264										
CACNG8	0	genome.wustl.edu	37	chr19	54466634	54466634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	cctcggagaagaaggaccccGgcggcctcacgcactcgggc	14	16	1	2			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	19	54466634	54466634	G	A	SNP	CACNG8	ENST00000270458	human	ensembl	69_37n	1	known	missense	c.238	p.G80S	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g8su,prints_Claudin	-	no_errors	CACNG8	HGNC	ENSG00000142408	17	0	0	6	9	60	-	-	-	A	54466634	G	A	54466634	3	1	24	1	0	0	0	0	1	0	0	0	2588	1116	39	1	240	1	CACNG8	19	54466634	Missense_Mutation	SNP	G	TCGA-A2-A0CK-01A-11D-A228-09	4976110	54466634	4662349	21	1265										
FAM47A	0	genome.wustl.edu	37	chrX	34148882	34148882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	gagtcttgggaggctccgagCggagactggacgtccgacga	17	10	1	1			TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	X	34148882	34148882	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1514	p.R505H	0.002	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	42	0	0	39	6	13.33	-	-	-	T	34148882	C	T	34148882	3	4	24	1	0	0	0	0	1	0	0	0	5615	768	27	1	865	1	FAM47A	23	34148882	Missense_Mutation	SNP	C	TCGA-A2-A0CK-01A-11D-A228-09		34148882	121121678	22	1266										
KDM6A	0	genome.wustl.edu	37	chrX	44941830	44941831	+	Frame_Shift_Ins	INS	-	-	A													0.173913043478261	4	0.311564534800497	2.2	NA	2.2	0.0285714285714286	0.251737451737452	0	taatctataggaagaaaatgINSaaaaaagaagtcatcataaa							TCGA-A2-A0CK-01A-11D-A228-09	TCGA-A2-A0CK-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	41fd0980-b541-40b8-9aae-3f47a9842486	b09f8ac6-5d0e-4e14-9f9e-ceafc44cfaea	X	44941830	44941831	-	A	INS	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_ins	c.3175_3176	p.R1061fs	1.000:1.000	NULL	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	53	0	0	33	12	26.67	-	-	-	A	44941831	-	A	44941830	7	5	24	1	0	1	1	0	0	0	0	0	8190	1291	45	0	3236	0	KDM6A	23	44941830	Frame_Shift_Ins	INS	-	TCGA-A2-A0CK-01A-11D-A228-09	10792948	44941830	110328730	23	1267										
REV1	0	genome.wustl.edu	37	chr2	100046338	100046338	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	aagatgcaatttcagcccttGacaaaacagaatcaattcca	5	10	2	3			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	2	100046338	100046338	G	C	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	nonsense	c.1511	p.S504*	1.000	pfam_DNA_repair_prot_UmuC-like,pirsf_REV1,pfscan_DNA_repair_prot_UmuC-like_N	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	121	0	0	111	13	10.48	-	-	-	C	100046338	G	C	100046338	4	2	25	1	0	0	0	0	0	1	0	0	13322	1294	45	2	2304	2	REV1	2	100046338	Nonsense_Mutation	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		100046338	143153035	1	1268										
SCN2A	0	genome.wustl.edu	37	chr2	166179704	166179704	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ggctcccttttctctccaagAcgcaacagtagggcgagcct	10	14	1	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	2	166179704	166179704	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.1710	p.R570S	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	39	0	0	49	9	15.52	-	-	-	T	166179704	A	T	166179704	3	4	25	1	0	0	0	0	1	0	0	0	14004	272	10	5	1848	5	SCN2A	2	166179704	Missense_Mutation	SNP	A	TCGA-A2-A0CL-01A-11D-A10Y-09	66133366	166179704	77019669	2	1269										
GLS	0	genome.wustl.edu	37	chr2	191827719	191827719	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	atggattgttgtaatggtctCaaatcccaagatttaaatca	7	6	2	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	2	191827719	191827719	C	G	SNP	GLS	ENST00000412247	human	ensembl	69_37n	1	putative	silent	c.516	p.L172	0.001	NULL	pfam_Glutaminase,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon	GLS	HGNC	ENSG00000115419	33	0	0	36	7	16.28	-	-	-	G	191827719	C	G	191827719	2	3	25	1	0	0	0	0	0	0	0	1	6515	841	29	2		2	GLS	2	191827719	Silent	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09	25648015	191827719	51371654	3	1270										
SLC2A2	0	genome.wustl.edu	37	chr3	170736326	170736326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	catatttcacttgcctgttgAggtgcattgatcacaccaat	7	10	2	2			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	3	170736326	170736326	A	G	SNP	SLC2A2	ENST00000382808	human	ensembl	69_37n	-1	known	missense	c.8	p.L3P	0.991	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	169	0	0	106	22	17.19	-	-	-	G	170736326	A	G	170736326	3	3	25	1	0	0	0	0	1	0	0	0	14633	291	11	5	1512	5	SLC2A2	3	170736326	Missense_Mutation	SNP	A	TCGA-A2-A0CL-01A-11D-A10Y-09		170736326	27286104	4	1271										
CEP135	0	genome.wustl.edu	37	chr4	56883874	56883874	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	caatggcaaaagccatgtctCgattagaagaagagctgaga	11	7	1	4			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	4	56883874	56883874	C	T	SNP	CEP135	ENST00000257287	human	ensembl	69_37n	1	known	nonsense	c.2863	p.R955*	0.970	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CEP135	HGNC	ENSG00000174799	74	0	0	53	6	10.17	-	-	-	T	56883874	C	T	56883874	4	4	25	1	0	0	0	0	0	1	0	0	3276	876	31	1	2945	1	CEP135	4	56883874	Nonsense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		56883874	134270402	5	1272										
MEP1A	0	genome.wustl.edu	37	chr6	46803035	46803035	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	cccactaaaggcaaaagactGagcccccaaggcctcattct	7	15	2	2			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	6	46803035	46803035	G	A	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	silent	c.1833	p.L611	0.000	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	52	0	0	51	9	15	-	-	-	A	46803035	G	A	46803035	2	1	25	1	0	0	0	0	0	0	0	1	9546	1277	45	2		2	MEP1A	6	46803035	Silent	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		46803035	124312032	6	1273										
C9orf114	0	genome.wustl.edu	37	chr9	131587304	131587304	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	agtcacccgaagcccgggctCcaggttcttgtcaatcttca	9	14	5	0			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	9	131587304	131587304	C	G	SNP	C9orf114	ENST00000361256	human	ensembl	69_37n	-1	known	missense	c.664	p.E222Q	1.000	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	-	no_errors	C9orf114	HGNC	ENSG00000198917	51	0	0	104	13	11.11	-	-	-	G	131587304	C	G	131587304	3	3	25	1	0	0	0	0	1	0	0	0	2474	864	30	2	486	2	C9orf114	9	131587304	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		131587304	9626127	7	1274										
ZC3H12C	0	genome.wustl.edu	37	chr11	110035921	110035921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ccatcacaagcctcctcttcCgcacctggctctgcacctgc	6	20	3	0			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	11	110035921	110035921	C	T	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	missense	c.2111	p.P704L	0.176	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	137	0	0	143	20	12.27	-	-	-	T	110035921	C	T	110035921	3	4	25	1	0	0	0	0	1	0	0	0	17659	652	23	1	2133	1	ZC3H12C	11	110035921	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		110035921	24970595	8	1275										
ATN1	0	genome.wustl.edu	37	chr12	7045461	7045461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	gggtatgggtggacttcctcCtggcccagagaagggcccaa	15	11	0	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	12	7045461	7045461	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.1031	p.P344L	0.995	NULL	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	138	0	0	150	29	16.2	-	-	-	T	7045461	C	T	7045461	3	4	25	1	0	0	0	0	1	0	0	0	1115	681	24	4	1045	4	ATN1	12	7045461	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		7045461	126806434	9	1276										
MDM2	0	genome.wustl.edu	37	chr12	69233129	69233129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	gcaacagatgttgggcccttCgtgagaattggcttcctgaa	12	9	0	3			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	12	69233129	69233129	C	T	SNP	MDM2	ENST00000462284	human	ensembl	69_37n	1	known	missense	c.994	p.R332C	1.000	pfam_Znf_RanBP2,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679	105	0	0	112	13	10.4	-	-	-	T	69233129	C	T	69233129	3	4	25	1	0	0	0	0	1	0	0	0	9484	884	31	1	1036	1	MDM2	12	69233129	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09	62187668	69233129	64618766	10	1277										
TPPP2	0	genome.wustl.edu	37	chr14	21500171	21500171	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ttgcgggacgggaagagatgActgacaacacaggctatgtg	15	7	0	3			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	14	21500171	21500171	A	G	SNP	TPPP2	ENST00000321760	human	ensembl	69_37n	1	known	missense	c.448	p.T150A	0.006	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP2	HGNC	ENSG00000179636	270	0	0	243	28	10.33	-	-	-	G	21500171	A	G	21500171	3	3	25	1	0	0	0	0	1	0	0	0	16510	275	10	5	458	5	TPPP2	14	21500171	Missense_Mutation	SNP	A	TCGA-A2-A0CL-01A-11D-A10Y-09		21500171	85849369	11	1278										
MRC2	0	genome.wustl.edu	37	chr17	60765922	60765922	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ttggattggcctccatgcctCgcagagggacttccagtggg	14	11	0	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	17	60765922	60765922	C	A	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	nonsense	c.3122	p.S1041*	0.866	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	200	0	0	202	29	12.55	-	-	-	A	60765922	C	A	60765922	4	1	25	1	0	0	0	0	0	1	0	0	9830	893	31	3	3208	3	MRC2	17	60765922	Nonsense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		60765922	20429288	12	1279										
KLK12	0	genome.wustl.edu	37	chr19	51535184	51535184	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	acgtggcactcggtgccagcGgttgcacagtcattgggcag	15	11	1	0			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	19	51535184	51535184	G	A	SNP	KLK12	ENST00000250351	human	ensembl	69_37n	-1	known	silent	c.405	p.T135	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	KLK12	HGNC	ENSG00000186474	66	0	0	36	7	16.28	-	-	-	A	51535184	G	A	51535184	2	1	25	1	0	0	0	0	0	0	0	1	8453	1103	39	1		1	KLK12	19	51535184	Silent	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		51535184	7593799	13	1280										
C20orf72	0	genome.wustl.edu	37	chr20	17970619	17970619	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	tgtggtggcctacaaagatgGatcacctgcccacccacatt	9	13	1	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	20	17970619	17970619	G	A	SNP	C20orf72	ENST00000377704	human	ensembl	69_37n	1	known	nonsense	c.549	p.W183*	1.000	NULL	NULL	-	no_errors	C20orf72	HGNC	ENSG00000125871	263	0	0	236	39	14.13	-	-	-	A	17970619	G	A	17970619	4	1	25	1	0	0	0	0	0	1	0	0	2138	1174	41	2	916	2	C20orf72	20	17970619	Nonsense_Mutation	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		17970619	45054901	14	1281										
PYGB	0	genome.wustl.edu	37	chr20	25252034	25252034	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ttcagcgtgtttccttgactCaatggctaccttgggcctgg	11	11	2	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	20	25252034	25252034	C	T	SNP	PYGB	ENST00000216962	human	ensembl	69_37n	1	known	missense	c.440	p.S147L	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	530	2	0.38	570	138	19.49	-	-	-	T	25252034	C	T	25252034	3	4	25	1	0	0	0	0	1	0	0	0	12943	838	29	2	454	2	PYGB	20	25252034	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09	7281415	25252034	37773486	15	1282										
POFUT2	0	genome.wustl.edu	37	chr21	46705636	46705636	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	atgacggggatgtttttattGagacttggaagatcaaaaaa	11	3	1	3			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	21	46705636	46705636	G	A	SNP	POFUT2	ENST00000349485	human	ensembl	69_37n	-1	known	silent	c.339	p.L113	0.998	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	119	0	0	103	12	10.43	-	-	-	A	46705636	G	A	46705636	2	1	25	1	0	0	0	0	0	0	0	1	12258	1277	45	2		2	POFUT2	21	46705636	Silent	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		46705636	1424259	16	1283										
CARD10	0	genome.wustl.edu	37	chr22	37912135	37912135	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	cagccgttgacagcgctcctGagcctgctgctggtcccgca	12	16	0	2			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	22	37912135	37912135	G	A	SNP	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	nonsense	c.544	p.Q182*	0.992	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	27	0	0	24	5	17.24	-	-	-	A	37912135	G	A	37912135	4	1	25	1	0	0	0	0	0	1	0	0	2669	1299	45	2	2626	2	CARD10	22	37912135	Nonsense_Mutation	SNP	G	TCGA-A2-A0CL-01A-11D-A10Y-09		37912135	13392431	17	1284										
HDX	0	genome.wustl.edu	37	chrX	83723943	83723943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	ctgccaatgaaaacacttcaCggatttccaagttttgtgtt	7	9	1	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	X	83723943	83723943	C	T	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.788	p.R263H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	72	0	0	82	14	14.58	-	-	-	T	83723943	C	T	83723943	3	4	25	1	0	0	0	0	1	0	0	0	7077	536	19	1	1316	1	HDX	23	83723943	Missense_Mutation	SNP	C	TCGA-A2-A0CL-01A-11D-A10Y-09		83723943	71546617	18	1285										
ENOX2	0	genome.wustl.edu	37	chrX	129769019	129769019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.315789473684211	6	0.0625530996775327	2.80714285714286	4.36666666666667	2.38181818181818	0.567099567099567	1	0	tgtcatctttgagtttttcaAgttcagcttctttctttttg	6	7	6	1			TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	X	129769019	129769019	A	C	SNP	ENOX2	ENST00000338144	human	ensembl	69_37n	-1	known	missense	c.1445	p.L482R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675	207	0	0	140	31	18.13	-	-	-	C	129769019	A	C	129769019	3	2	25	1	0	0	0	0	1	0	0	0	5164	72	3	5	403	5	ENOX2	23	129769019	Missense_Mutation	SNP	A	TCGA-A2-A0CL-01A-11D-A10Y-09	46045076	129769019	25501541	19	1286										
RAB42	0	genome.wustl.edu	37	chr1	28920546	28920547	+	Frame_Shift_Ins	INS	-	-	G													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	catcaagctagaagagggctINSgggggggtgtccggctcatc							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	28920546	28920547	-	G	INS	RAB42	ENST00000373826	human	ensembl	69_37n	1	known	frame_shift_ins	c.235_236	p.V82fs	1.000:1.000	NULL	pfam_Small_GTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060	95	0	0	63	7	10	-	-	-	G	28920547	-	G	28920546	7	5	26	1	0	1	1	0	0	0	0	0	13027	1580	55	0	237	0	RAB42	1	28920546	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09		28920546	220330075	1	1287										
PRUNE	0	genome.wustl.edu	37	chr1	150999720	150999720	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gctttctaggactgaccactGagcagatgctgagaaaagac	11	9	1	5			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	150999720	150999720	G	A	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	1	known	missense	c.691	p.E231K	1.000	pfam_DHHA2	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	218	0	0	187	79	29.7	-	-	-	A	150999720	G	A	150999720	3	1	26	1	0	0	0	0	1	0	0	0	12720	1291	45	2	713	2	PRUNE	1	150999720	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	122079174	150999720	98250901	2	1288										
YY1AP1	0	genome.wustl.edu	37	chr1	155646348	155646348	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gaaagtgttacctgctgcatCtgctgctggagtctcttcct	10	11	2	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	155646348	155646348	C	G	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.729	p.Q243H	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	198	0	0	276	61	18.1	-	-	-	G	155646348	C	G	155646348	3	3	26	1	0	0	0	0	1	0	0	0	17605	912	32	2	1965	2	YY1AP1	1	155646348	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	4646628	155646348	93604273	3	1289										
SPTA1	0	genome.wustl.edu	37	chr1	158589080	158589080	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tcctgacacatctcaaagttCttgacctgtcttgcctcttc	5	14	4	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	158589080	158589080	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6462	p.K2154N	1.000	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	225	0	0	300	314	51.14	-	-	-	A	158589080	C	A	158589080	3	1	26	1	0	0	0	0	1	0	0	0	15207	912	32	2	829	2	SPTA1	1	158589080	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	2942732	158589080	90661541	4	1290										
HLX	0	genome.wustl.edu	37	chr1	221057867	221057867	+	Frame_Shift_Del	DEL	G	G	-													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gtggtgggagcagcggcggcGgcggcaatagtttcagcttc							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	221057867	221057867	G	-	DEL	HLX	ENST00000366903	human	ensembl	69_37n	1	known	frame_shift_del	c.1288	p.G430fs	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630	41	0	0	34	19	35.85	-	-	-	-	221057867	G	-	221057867	7	5	26	1	0	1	0	1	0	0	0	0	7267	1116	39	0	1302	0	HLX	1	221057867	Frame_Shift_Del	DEL	G	TCGA-A2-A0CM-01A-31W-A050-09	62468787	221057867	28192754	5	1291										
AHCTF1	0	genome.wustl.edu	37	chr1	247039420	247039420	+	Frame_Shift_Del	DEL	T	T	-													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tcgatggactctaggaaggaTttttccatactggtctaata							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	247039420	247039420	T	-	DEL	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	frame_shift_del	c.3034	p.I1012fs	0.994	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	81	0	0	45	9	16.36	-	-	-	-	247039420	T	-	247039420	7	5	26	1	0	1	0	1	0	0	0	0	408	1493	52	0	3845	0	AHCTF1	1	247039420	Frame_Shift_Del	DEL	T	TCGA-A2-A0CM-01A-31W-A050-09	25981553	247039420	2211201	6	1292										
ATP1B3	0	genome.wustl.edu	37	chr3	141622516	141622516	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gttcctggctgcactcttctCattcacgatgtgggttatgc	10	11	3	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	141622516	141622516	C	G	SNP	ATP1B3	ENST00000286371	human	ensembl	69_37n	1	known	nonsense	c.164	p.S55*	0.753	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B3	HGNC	ENSG00000069849	263	0	0	258	78	23.21	-	-	-	G	141622516	C	G	141622516	4	3	26	1	0	0	0	0	0	1	0	0	1138	838	29	2	170	2	ATP1B3	3	141622516	Nonsense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		141622516	56399914	7	1293										
GMPS	0	genome.wustl.edu	37	chr3	155623998	155623998	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ttacacatggagatagtgtaGacaaagtagctgatggattc	11	5	0	3			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	155623998	155623998	G	C	SNP	GMPS	ENST00000496455	human	ensembl	69_37n	1	known	missense	c.472	p.D158H	1.000	pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_GMP_synth_N	pfam_GATASE_1,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	201	0	0	135	49	26.49	-	-	-	C	155623998	G	C	155623998	3	2	26	1	0	0	0	0	1	0	0	0	6550	942	33	2	490	2	GMPS	3	155623998	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	14001482	155623998	42398432	8	1294										
CCDC39	0	genome.wustl.edu	37	chr3	180359800	180359800	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ccttatgttttcccgttcttGatcaacatatcttatttgtg	5	9	3	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	180359800	180359800	G	A	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	nonsense	c.1855	p.Q619*	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	140	0	0	150	38	20.11	-	-	-	A	180359800	G	A	180359800	4	1	26	1	0	0	0	0	0	1	0	0	2837	1299	45	2	1002	2	CCDC39	3	180359800	Nonsense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	24735802	180359800	17662630	9	1295										
CDKL2	0	genome.wustl.edu	37	chr4	76529120	76529120	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	atttttattaaaaagctcctGatgccttggaattagattac	6	6	0	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	76529120	76529120	G	A	SNP	CDKL2	ENST00000429927	human	ensembl	69_37n	-1	known	nonsense	c.676	p.Q226*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL2	HGNC	ENSG00000138769	140	0	0	62	17	21.52	-	-	-	A	76529120	G	A	76529120	4	1	26	1	0	0	0	0	0	1	0	0	3183	1299	45	2	829	2	CDKL2	4	76529120	Nonsense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		76529120	114625156	10	1296										
HPSE	0	genome.wustl.edu	37	chr4	84255926	84255926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	cggcagcgcaggcttcgagcGcagcagcatcttgggctcac	14	14	2	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	84255926	84255926	G	T	SNP	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	missense	c.10	p.R4S	0.007	NULL	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083	49	0	0	42	6	12.5	-	-	-	T	84255926	G	T	84255926	3	4	26	1	0	0	0	0	1	0	0	0	7395	1087	38	3	1669	3	HPSE	4	84255926	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	7726806	84255926	106898350	11	1297										
CDC20B	0	genome.wustl.edu	37	chr5	54436170	54436170	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	acacattcggattgctcacaGagctgcatttttccattagc	7	11	1	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	54436170	54436170	G	C	SNP	CDC20B	ENST00000296733	human	ensembl	69_37n	-1	known	silent	c.552	p.L184	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287	224	0	0	155	28	15.14	-	-	-	C	54436170	G	C	54436170	2	2	26	1	0	0	0	0	0	0	0	1	3089	929	33	2		2	CDC20B	5	54436170	Silent	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		54436170	126479090	12	1298										
THBS4	0	genome.wustl.edu	37	chr5	79366973	79366973	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ccgatggggatggaagaggaGatgcctgtgatgatgacatg	17	5	0	5			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	79366973	79366973	G	A	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	missense	c.1690	p.D564N	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	431	0	0	240	55	18.58	-	-	-	A	79366973	G	A	79366973	3	1	26	1	0	0	0	0	1	0	0	0	15951	942	33	2	1740	2	THBS4	5	79366973	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	24930803	79366973	101548287	13	1299										
ELL2	0	genome.wustl.edu	37	chr5	95236466	95236466	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	cggctggtgcctgcagcattCtgagacggatttagttttct	12	9	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	95236466	95236466	C	G	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.885	p.Q295H	1.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	142	0	0	73	19	20.65	-	-	-	G	95236466	C	G	95236466	3	3	26	1	0	0	0	0	1	0	0	0	5100	912	32	2	1061	2	ELL2	5	95236466	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	15869493	95236466	85678794	14	1300										
SLC4A9	0	genome.wustl.edu	37	chr5	139743671	139743672	+	Frame_Shift_Ins	INS	-	-	T													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gtttcctgggcacagcagtgINSgctggagctgccttctgcct							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	139743671	139743672	-	T	INS	SLC4A9	ENST00000230993	human	ensembl	69_37n	1	known	frame_shift_ins	c.1359_1360	p.A453fs	0.004:0.006	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	51	0	0	27	23	46	-	-	-	T	139743672	-	T	139743671	7	5	26	1	0	1	1	0	0	0	0	0	14749	1335	47	0	1325	0	SLC4A9	5	139743671	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09	44507205	139743671	41171589	15	1301										
PRSS35	0	genome.wustl.edu	37	chr6	84234145	84234145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	atcggttttgcagtgtgtccGacgaatccaatgatctcctt	9	10	1	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	6	84234145	84234145	G	A	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	missense	c.985	p.D329N	0.998	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	127	0	0	68	28	29.17	-	-	-	A	84234145	G	A	84234145	3	1	26	1	0	0	0	0	1	0	0	0	12704	1058	37	1	987	1	PRSS35	6	84234145	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		84234145	86880922	16	1302										
PPP1R9A	0	genome.wustl.edu	37	chr7	94855425	94855425	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	aagctcagtcacaagttcaaAgaggtatgccactaagctgc	9	10	3	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	7	94855425	94855425	A	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	silent	c.2043	p.K681	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	124	0	0	86	22	20.37	-	-	-	G	94855425	A	G	94855425	2	3	26	1	0	0	0	0	0	0	0	1	12455	69	3	5		5	PPP1R9A	7	94855425	Silent	SNP	A	TCGA-A2-A0CM-01A-31W-A050-09		94855425	64283238	17	1303										
SAP25	0	genome.wustl.edu	37	chr7	100170020	100170020	+	Frame_Shift_Del	DEL	C	C	-													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ggtatggtctggggggccaaCcgcggaggagctgggcctag							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	7	100170020	100170020	C	-	DEL	SAP25	ENST00000538735	human	ensembl	69_37n	-1	known	frame_shift_del	c.490	p.V164fs	0.000	NULL	NULL	-	no_errors	SAP25	HGNC	ENSG00000205307	27	0	0	12	16	57.14	-	-	-	-	100170020	C	-	100170020	7	5	26	1	0	1	0	1	0	0	0	0	13919	507	18	0	113	0	SAP25	7	100170020	Frame_Shift_Del	DEL	C	TCGA-A2-A0CM-01A-31W-A050-09	5314595	100170020	58968643	18	1304										
KIAA0146	0	genome.wustl.edu	37	chr8	48614556	48614556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	cgttgcagtttctatgccacGgtgatttaccaaaaaccaca	7	11	1	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	48614556	48614556	G	T	SNP	KIAA0146	ENST00000519401	human	ensembl	69_37n	1	putative	missense	c.1001	p.R334L	0.422	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0146	HGNC	ENSG00000164808	183	0	0	79	24	23.3	-	-	-	T	48614556	G	T	48614556	3	4	26	1	0	0	0	0	1	0	0	0	8209	1103	39	3	2010	3	KIAA0146	8	48614556	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		48614556	97749466	19	1305										
CHD7	0	genome.wustl.edu	37	chr8	61693870	61693870	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ccgaaggaaccgaaagaaccCaaggagaaaaaagagcccaa	10	10	0	3			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	61693870	61693870	C	A	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	silent	c.1977	p.P659	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	243	0	0	140	26	15.66	-	-	-	A	61693870	C	A	61693870	2	1	26	1	0	0	0	0	0	0	0	1	3359	581	21	4		4	CHD7	8	61693870	Silent	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	13079314	61693870	84670152	20	1306										
PRDM14	0	genome.wustl.edu	37	chr8	70971077	70971078	+	Frame_Shift_Ins	INS	-	-	G													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tctgtagccttctgcagactINSctgtcaaacacagcaaacac							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	70971077	70971078	-	G	INS	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1184_1185	p.E395fs	1.000:1.000	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	130	0	0	96	163	62.93	-	-	-	G	70971078	-	G	70971077	7	5	26	1	0	1	1	0	0	0	0	0	12536	1565	54	0	543	0	PRDM14	8	70971077	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09	9277207	70971077	75392945	21	1307										
IFNA2	0	genome.wustl.edu	37	chr9	21385235	21385235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	caaggtcctcctgctacccaGgctgtgggtttgaggcagat	13	11	0	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	21385235	21385235	G	T	SNP	IFNA2	ENST00000380206	human	ensembl	69_37n	-1	known	missense	c.94	p.L32M	0.056	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA2	HGNC	ENSG00000188379	126	0	0	178	36	16.82	-	-	-	T	21385235	G	T	21385235	3	4	26	1	0	0	0	0	1	0	0	0	7591	991	35	4	476	4	IFNA2	9	21385235	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		21385235	119828196	22	1308										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69423558	69423558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	agactggctgctgctataagCaaacacagtgaaagtgtgaa	11	7	0	3			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	69423558	69423558	C	T	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	silent	c.1854	p.S618	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	36	0	0	34	7	17.07	-	-	-	T	69423558	C	T	69423558	2	4	26	1	0	0	0	0	0	0	0	1	650	709	25	4		4	ANKRD20A4	9	69423558	Silent	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	48038323	69423558	71789873	23	1309										
SLC28A3	0	genome.wustl.edu	37	chr9	86909149	86909149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	atcagtcccaggtagtacagCatggacatcacagtgctgaa	10	10	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	86909149	86909149	C	T	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.903	p.M301I	1.000	pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	127	0	0	101	14	12.17	-	-	-	T	86909149	C	T	86909149	3	4	26	1	0	0	0	0	1	0	0	0	14622	710	25	4	1212	4	SLC28A3	9	86909149	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	17485591	86909149	54304282	24	1310										
ZNF22	0	genome.wustl.edu	37	chr10	45499229	45499229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	aattcatactggagaaaaacCctatcagtgtgatgagtgtg	10	6	2	3			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	10	45499229	45499229	C	T	SNP	ZNF22	ENST00000298299	human	ensembl	69_37n	1	known	missense	c.413	p.P138L	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF22	HGNC	ENSG00000165512	123	0	0	68	9	11.69	-	-	-	T	45499229	C	T	45499229	3	4	26	1	0	0	0	0	1	0	0	0	17870	623	22	4	415	4	ZNF22	10	45499229	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		45499229	90035518	25	1311										
MGMT	0	genome.wustl.edu	37	chr10	131565072	131565072	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gtccccatcctcatcccgtgCcacagagtggtctgcagcag	10	16	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	10	131565072	131565072	C	A	SNP	MGMT	ENST00000306010	human	ensembl	69_37n	1	known	nonsense	c.528	p.C176*	1.000	pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430	8	0	0	13	5	27.78	-	-	-	A	131565072	C	A	131565072	4	1	26	1	0	0	0	0	0	1	0	0	9628	747	26	4	546	4	MGMT	10	131565072	Nonsense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	86065843	131565072	3969675	26	1312										
B4GALNT4	0	genome.wustl.edu	37	chr11	380920	380921	+	Frame_Shift_Ins	INS	-	-	G													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ggaggagttccgagaccagtINSgggggggtgaagactgggag							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	380920	380921	-	G	INS	B4GALNT4	ENST00000329962	human	ensembl	69_37n	1	known	frame_shift_ins	c.2965_2966	p.E992fs	1.000:1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	27	0	0	19	4	17.39	-	-	-	G	380921	-	G	380920	7	5	26	1	0	1	1	0	0	0	0	0	1273	1696	59	0	3039	0	B4GALNT4	11	380920	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09		380920	134625596	27	1313										
OR4C12	0	genome.wustl.edu	37	chr11	50003441	50003441	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	aagcagataaacccactgttCacagcaacaaagagaccaag	7	11	1	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	50003441	50003441	C	T	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	silent	c.597	p.V199	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	202	0	0	111	44	28.39	-	-	-	T	50003441	C	T	50003441	2	4	26	1	0	0	0	0	0	0	0	1	11119	813	29	2		2	OR4C12	11	50003441	Silent	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	49622521	50003441	85003075	28	1314										
ODZ4	0	genome.wustl.edu	37	chr11	78399254	78399254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ggaaggtcacatttgtcaggCggccaaagctgtcgtacctg	13	10	2	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	78399254	78399254	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.5105	p.R1702H	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	112	0	0	58	28	32.56	-	-	-	T	78399254	C	T	78399254	3	4	26	1	0	0	0	0	1	0	0	0	10910	768	27	1	3228	1	ODZ4	11	78399254	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	28395813	78399254	56607262	29	1315										
EXPH5	0	genome.wustl.edu	37	chr11	108381164	108381164	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tgtgaaatgctgttagacttCtggttgctgacgtgtgtaga	13	5	1	4			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	108381164	108381164	C	T	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	silent	c.5070	p.Q1690	0.485	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	130	0	0	59	9	13.24	-	-	-	T	108381164	C	T	108381164	2	4	26	1	0	0	0	0	0	0	0	1	5359	912	32	2		2	EXPH5	11	108381164	Silent	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	29981910	108381164	26625352	30	1316										
IGSF9B	0	genome.wustl.edu	37	chr11	133790744	133790745	+	Frame_Shift_Ins	INS	-	-	G													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ctggccatggtggaagggccINSggggggcagggggccgggcc							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	133790744	133790745	-	G	INS	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2876_2875	p.R959fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	31	0	0	15	2	11.76	-	-	-	G	133790745	-	G	133790744	7	5	26	1	0	1	1	0	0	0	0	0	7660	652	23	0	1181	0	IGSF9B	11	133790744	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09	25409580	133790744	1215772	31	1317										
C12orf71	0	genome.wustl.edu	37	chr12	27235309	27235309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tcttcccaggaggttgtgtcCtcacagggggtgtcctcaca	12	12	3	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	12	27235309	27235309	C	A	SNP	C12orf71	ENST00000429849	human	ensembl	69_37n	-1	known	missense	c.108	p.E36D	0.010	NULL	NULL	-	no_errors	C12orf71	HGNC	ENSG00000214700	134	0	0	72	24	24.74	-	-	-	A	27235309	C	A	27235309	3	1	26	1	0	0	0	0	1	0	0	0	1724	680	24	4	709	4	C12orf71	12	27235309	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		27235309	106616586	32	1318										
BICD1	0	genome.wustl.edu	37	chr12	32520614	32520614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tttcttgtagattgtcagcaGcctgctgcctccgtaccgcc	9	14	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	12	32520614	32520614	G	A	SNP	BICD1	ENST00000548411	human	ensembl	69_37n	1	known	missense	c.2471	p.S824N	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC-like	-	no_errors	BICD1	HGNC	ENSG00000151746	69	0	0	58	7	10.77	-	-	-	A	32520614	G	A	32520614	3	1	26	1	0	0	0	0	1	0	0	0	1433	971	34	4	2809	4	BICD1	12	32520614	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	5285305	32520614	101331281	33	1319										
IFT88	0	genome.wustl.edu	37	chr13	21173632	21173632	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	aaatatctatttaaagcaaaGaaattattccaaagccatta	3	6	1	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	13	21173632	21173632	G	T	SNP	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	missense	c.767	p.R256I	1.000	pfam_TPR-1,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	58	0	0	15	6	28.57	-	-	-	T	21173632	G	T	21173632	3	4	26	1	0	0	0	0	1	0	0	0	7620	942	33	2	809	2	IFT88	13	21173632	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		21173632	93996246	34	1320										
ATP11A	0	genome.wustl.edu	37	chr13	113477668	113477669	+	Frame_Shift_Ins	INS	-	-	TC													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	atctttacaggcccttaggaINStcggaaaacctgctgcttag							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	13	113477668	113477669	-	TC	INS	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	frame_shift_ins	c.735_736	p.E246fs	0.994:0.999	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	136	0	0	80	45	36	-	-	-	TC	113477669	-	TC	113477668	7	5	26	1	0	1	1	0	0	0	0	0	1123	320	12	0	769	0	ATP11A	13	113477668	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09	92304036	113477668	1692210	35	1321										
BMP4	0	genome.wustl.edu	37	chr14	54416966	54416966	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ggaaaggggcagtccccatgGcagtagaaggcctggtagcc	16	10	0	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	14	54416966	54416966	G	T	SNP	BMP4	ENST00000245451	human	ensembl	69_37n	-1	known	nonsense	c.1011	p.C337*	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378	99	0	0	48	15	23.81	-	-	-	T	54416966	G	T	54416966	4	4	26	1	0	0	0	0	0	1	0	0	1467	1195	42	4	219	4	BMP4	14	54416966	Nonsense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		54416966	52932574	36	1322										
SLTM	0	genome.wustl.edu	37	chr15	59205704	59205704	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	aactggctaaagacctgactTtcgatgtcctctttttctat	6	10	2	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	15	59205704	59205704	T	A	SNP	SLTM	ENST00000558756	human	ensembl	69_37n	-1	known	nonsense	c.391	p.K131*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLTM	HGNC	ENSG00000137776	225	0	0	71	92	56.44	-	-	-	A	59205704	T	A	59205704	4	1	26	1	0	0	0	0	0	1	0	0	14843	1838	64	5	2669	5	SLTM	15	59205704	Nonsense_Mutation	SNP	T	TCGA-A2-A0CM-01A-31W-A050-09		59205704	43325688	37	1323										
ZNF689	0	genome.wustl.edu	37	chr16	30615937	30615937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ggatggccagggagccgctcCgccggaaggcacgcccacag	16	15	0	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	30615937	30615937	C	T	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	missense	c.1151	p.R384Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	30	0	0	28	4	12.5	-	-	-	T	30615937	C	T	30615937	3	4	26	1	0	0	0	0	1	0	0	0	18190	652	23	1	355	1	ZNF689	16	30615937	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		30615937	59738816	38	1324										
CDH11	0	genome.wustl.edu	37	chr16	65032473	65032473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	caccgtacgcacccacattgGacctctcaggcacgttggca	9	16	1	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	65032473	65032473	G	T	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.515	p.S172Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	204	0	0	194	48	19.83	-	-	-	T	65032473	G	T	65032473	3	4	26	1	0	0	0	0	1	0	0	0	3126	1174	41	2	1915	2	CDH11	16	65032473	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09	34416536	65032473	25322280	39	1325										
IRF8	0	genome.wustl.edu	37	chr16	85954813	85954813	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gagccgccgccagaccaggtCttccggatgtttccagatat	11	13	1	2			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	85954813	85954813	C	G	SNP	IRF8	ENST00000268638	human	ensembl	69_37n	1	known	silent	c.1206	p.V402	1.000	superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	63	0	0	32	18	35.29	-	-	-	G	85954813	C	G	85954813	2	3	26	1	0	0	0	0	0	0	0	1	7890	900	32	2		2	IRF8	16	85954813	Silent	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	20922340	85954813	4399940	40	1326										
TP53	0	genome.wustl.edu	37	chr17	7578239	7578239	+	Frame_Shift_Del	DEL	C	C	-													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gtttctgtcatccaaatactCcacacgcaaatttccttcca							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	7578239	7578239	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.610	p.E204fs	0.045	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	443	0	0	106	94	47	-	-	-	-	7578239	C	-	7578239	7	5	26	1	0	1	0	1	0	0	0	0	16477	864	30	0	684	0	TP53	17	7578239	Frame_Shift_Del	DEL	C	TCGA-A2-A0CM-01A-31W-A050-09		7578239	73616971	41	1327										
SDK2	0	genome.wustl.edu	37	chr17	71375612	71375613	+	Frame_Shift_Ins	INS	-	-	G													0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ccccaacaaagacctcctgcINSggggggctggagggcccctc							TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	71375612	71375613	-	G	INS	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4839_4838	p.Q1614fs	0.015:1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	41	0	0	23	4	14.81	-	-	-	G	71375613	-	G	71375612	7	5	26	1	0	1	1	0	0	0	0	0	14057	755	27	0	1723	0	SDK2	17	71375612	Frame_Shift_Ins	INS	-	TCGA-A2-A0CM-01A-31W-A050-09	63797373	71375612	9819598	42	1328										
CARD14	0	genome.wustl.edu	37	chr17	78171932	78171932	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gaaagcagcctgcagccagtCtcccctggaaggcttgatgt	12	12	1	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	78171932	78171932	C	T	SNP	CARD14	ENST00000571450	human	ensembl	69_37n	1	known	missense	c.1018	p.L340F	0.000	NULL	superfamily_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CARD14	HGNC	ENSG00000141527	28	0	0	21	5	19.23	-	-	-	T	78171932	C	T	78171932	3	4	26	1	0	0	0	0	1	0	0	0	2671	900	32	2	1671	2	CARD14	17	78171932	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	6796320	78171932	3023278	43	1329										
ZCCHC2	0	genome.wustl.edu	37	chr18	60242018	60242018	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	ctaccaatgtgaaggtagttCttccagcagctggcctctca	9	12	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	18	60242018	60242018	C	G	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.2704	p.L902V	1.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	104	0	0	33	34	50	-	-	-	G	60242018	C	G	60242018	3	3	26	1	0	0	0	0	1	0	0	0	17683	913	32	2	2754	2	ZCCHC2	18	60242018	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		60242018	17835230	44	1330										
ZNF77	0	genome.wustl.edu	37	chr19	2933696	2933696	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	cacatgcttttgaaagtactGagcgtggctgaaggctttcc	11	9	0	3			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	2933696	2933696	G	C	SNP	ZNF77	ENST00000314531	human	ensembl	69_37n	-1	known	missense	c.1429	p.Q477E	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	260	0	0	121	23	15.86	-	-	-	C	2933696	G	C	2933696	3	2	26	1	0	0	0	0	1	0	0	0	18236	1299	45	2	212	2	ZNF77	19	2933696	Missense_Mutation	SNP	G	TCGA-A2-A0CM-01A-31W-A050-09		2933696	56195287	45	1331										
SYDE1	0	genome.wustl.edu	37	chr19	15222237	15222237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gaggacctgtaccccgatatCaatgtcatcactggtcagca	9	12	4	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	15222237	15222237	C	G	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	missense	c.1404	p.I468M	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	208	0	0	78	29	27.1	-	-	-	G	15222237	C	G	15222237	3	3	26	1	0	0	0	0	1	0	0	0	15527	816	29	2	1422	2	SYDE1	19	15222237	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	12288541	15222237	43906746	46	1332										
FAM129C	0	genome.wustl.edu	37	chr19	17664329	17664329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	acactccctggagaccgtttCctcccattctgtctggagtt	8	14	2	1			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	17664329	17664329	C	T	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.2051	p.S684F	0.001	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	153	0	0	83	17	17	-	-	-	T	17664329	C	T	17664329	3	4	26	1	0	0	0	0	1	0	0	0	5478	855	30	2	2230	2	FAM129C	19	17664329	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	2442092	17664329	41464654	47	1333										
TTYH1	0	genome.wustl.edu	37	chr19	54946801	54946801	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	gctactcttctccctgctgtCtgcaggagcgctggccactg	11	15	3	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	54946801	54946801	C	T	SNP	TTYH1	ENST00000376531	human	ensembl	69_37n	1	known	missense	c.1205	p.S402F	0.993	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614	21	0	0	5	5	50	-	-	-	T	54946801	C	T	54946801	3	4	26	1	0	0	0	0	1	0	0	0	16836	913	32	2	1247	2	TTYH1	19	54946801	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09	37282472	54946801	4182182	48	1334										
ADA	0	genome.wustl.edu	37	chr20	43257689	43257689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tgggttgggggcaactcacgCgatagcaggcatgtagtagt	16	7	1	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	20	43257689	43257689	C	T	SNP	ADA	ENST00000372874	human	ensembl	69_37n	-1	known	missense	c.217	p.A73T	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839	35	0	0	34	8	19.05	-	-	-	T	43257689	C	T	43257689	3	4	26	1	0	0	0	0	1	0	0	0	230	782	27	1	914	1	ADA	20	43257689	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		43257689	19767831	49	1335										
CBS	0	genome.wustl.edu	37	chr21	44479399	44479399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.34	17	1.56138390515498e-07	4.51884627990823	7.17699115044248	3.1897738446411	1	1	13	tctgcagcatccacctgtcgCtcaggaacttggtcctgcgg	11	14	2	0			TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	21	44479399	44479399	C	T	SNP	CBS	ENST00000398168	human	ensembl	69_37n	-1	known	missense	c.1160	p.S387N	0.993	superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Cysta_beta_synth	pfam_PyrdxlP-dep_enz_bsu,pfam_Cysta_beta_synth_core,superfamily_PyrdxlP-dep_enz_bsu,smart_Cysta_beta_synth_core,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200	13	0	0	6	6	50	-	-	-	T	44479399	C	T	44479399	3	4	26	1	0	0	0	0	1	0	0	0	2736	797	28	4	515	4	CBS	21	44479399	Missense_Mutation	SNP	C	TCGA-A2-A0CM-01A-31W-A050-09		44479399	3650496	50	1336										
PDE4DIP	0	genome.wustl.edu	37	chr1	145039922	145039922	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gagccagcggctgcccgggcGgcggtgcgcgcactctccag	17	16	1	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	1	145039922	145039922	G	C	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	9	0	0	10	4	28.57	-	-	-	C	145039922	G	C	145039922	1	2	27	0	1	0	0	0	0	0	0	0	11716	1131	39	3		3	PDE4DIP	1	145039922	RNA	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		145039922	104210699	1	1337										
KCNN3	0	genome.wustl.edu	37	chr1	154842330	154842330	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ggtggtggctgctgctgctgTtgctgctgctgctgctgctg	17	10	0	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	1	154842330	154842330	T	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.111	p.Q37	0.893	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	40	0	0	84	10	10.64	-	-	-	C	154842330	T	C	154842330	2	2	27	1	0	0	0	0	0	0	0	1	8134	1722	60	5		5	KCNN3	1	154842330	Silent	SNP	T	TCGA-A2-A0CO-01A-13D-A228-09	9802408	154842330	94408291	2	1338										
EIF2AK3	0	genome.wustl.edu	37	chr2	88889973	88889973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ttactcacccaagtaaacacTgttttctgtggctcctctgg	7	12	3	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	2	88889973	88889973	T	G	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	missense	c.1153	p.S385R	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	41	0	0	20	6	23.08	-	-	-	G	88889973	T	G	88889973	3	3	27	1	0	0	0	0	1	0	0	0	5033	1580	55	5	2245	5	EIF2AK3	2	88889973	Missense_Mutation	SNP	T	TCGA-A2-A0CO-01A-13D-A228-09		88889973	154309400	3	1339										
ANKRD44	0	genome.wustl.edu	37	chr2	197857433	197857433	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	cagcagggtacatgctaggaTacatggggctgcaaaatcaa	12	8	1	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	2	197857433	197857433	T	G	SNP	ANKRD44	ENST00000486006	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	ANKRD44	HGNC	ENSG00000065413	39	0	0	49	7	12.5	-	-	-	G	197857433	T	G	197857433	1	3	27	0	1	0	0	0	0	0	0	0	671	1421	49	5		5	ANKRD44	2	197857433	RNA	SNP	T	TCGA-A2-A0CO-01A-13D-A228-09	108967460	197857433	45341940	4	1340										
DNAH12	0	genome.wustl.edu	37	chr3	57410762	57410762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	aaccaaccataatccaaacaCgaatgtgcttgctagtagga	7	10	0	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	57410762	57410762	C	T	SNP	DNAH12	ENST00000495027	human	ensembl	69_37n	-1	putative	missense	c.5360	p.R1787H	0.999	NULL	pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_stop_codon	DNAH12	HGNC	ENSG00000174844	41	0	0	30	4	11.76	-	-	-	T	57410762	C	T	57410762	3	4	27	1	0	0	0	0	1	0	0	0	4636	551	19	1		1	DNAH12	3	57410762	Missense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		57410762	140611668	5	1341										
CCDC39	0	genome.wustl.edu	37	chr3	180426685	180426685	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gccccctttctcctaagatcCatgatttctatttggacaaa	5	12	2	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	180426685	180426685	C	T	SNP	CCDC39	ENST00000485055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC39	HGNC	ENSG00000145075	71	0	0	39	13	25	-	-	-	T	180426685	C	T	180426685	1	4	27	0	1	0	0	0	0	0	0	0	2837	609	21	4		4	CCDC39	3	180426685	RNA	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	123015923	180426685	17595745	6	1342										
MASP1	0	genome.wustl.edu	37	chr3	186953629	186953629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ccaggccttgcaccacccagCgctggctcaagtcatcaaag	9	16	3	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	186953629	186953629	C	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	missense	c.2030	p.R677H	0.988	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	28	0	0	25	6	19.35	-	-	-	T	186953629	C	T	186953629	3	4	27	1	0	0	0	0	1	0	0	0	9393	768	27	1	981	1	MASP1	3	186953629	Missense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	6526944	186953629	11068801	7	1343										
SPP1	0	genome.wustl.edu	37	chr4	88902647	88902647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	acccttccaagtaagtccaaCgaaagccatgaccacatgga	7	13	0	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	4	88902647	88902647	C	T	SNP	SPP1	ENST00000395080	human	ensembl	69_37n	1	known	silent	c.237	p.N79	0.082	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785	29	0	0	44	7	13.73	-	-	-	T	88902647	C	T	88902647	2	4	27	1	0	0	0	0	0	0	0	1	15177	535	19	1		1	SPP1	4	88902647	Silent	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		88902647	102251629	8	1344										
PRKAA1	0	genome.wustl.edu	37	chr5	40763109	40763109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gagtagcagtccctgatttgGcttctgtaatttcatctggg	11	8	3	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	5	40763109	40763109	G	T	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	missense	c.1496	p.A499D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	29	0	0	23	4	14.81	-	-	-	T	40763109	G	T	40763109	3	4	27	1	0	0	0	0	1	0	0	0	12574	1203	42	4	232	4	PRKAA1	5	40763109	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		40763109	140152151	9	1345										
PITX1	0	genome.wustl.edu	37	chr5	134364708	134364708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gaggcccgagttgggcatgcCaggcacggcgcctgggccca	17	14	0	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	5	134364708	134364708	C	T	SNP	PITX1	ENST00000265340	human	ensembl	69_37n	-1	known	missense	c.706	p.G236S	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX1	HGNC	ENSG00000069011	83	0	0	62	22	26.19	-	-	-	T	134364708	C	T	134364708	3	4	27	1	0	0	0	0	1	0	0	0	12028	594	21	4	242	4	PITX1	5	134364708	Missense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	93601599	134364708	46550552	10	1346										
TMEM63B	0	genome.wustl.edu	37	chr6	44121445	44121445	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	tgctgctgaagcacctggtaGacaggtacaatctctactac	9	11	1	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	44121445	44121445	G	A	SNP	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	missense	c.1975	p.D659N	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	44	0	0	43	13	23.21	-	-	-	A	44121445	G	A	44121445	3	1	27	1	0	0	0	0	1	0	0	0	16286	942	33	2	2053	2	TMEM63B	6	44121445	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		44121445	126993622	11	1347										
SLC29A1	0	genome.wustl.edu	37	chr6	44197966	44197966	+	RNA	DEL	G	G	-													0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ctgggagggggcagagagaaGggcagctcagcctcaaggct							TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	44197966	44197966	G	-	DEL	SLC29A1	ENST00000472176	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC29A1	HGNC	ENSG00000112759	40	0	0	46	6	11.54	-	-	-	-	44197966	G	-	44197966	6	5	27	0	1	1	0	1	0	0	0	0	14623	1015	35	0		0	SLC29A1	6	44197966	RNA	DEL	G	TCGA-A2-A0CO-01A-13D-A228-09	76521	44197966	126917101	12	1348										
POU3F2	0	genome.wustl.edu	37	chr6	99283859	99283859	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	agcgtcaagggggctctggaGagccatttcctcaaatgccc	12	12	3	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	99283859	99283859	G	C	SNP	POU3F2	ENST00000328345	human	ensembl	69_37n	1	known	missense	c.1110	p.E370D	1.000	pirsf_Transcription_factor_POU,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486	40	0	0	23	4	14.81	-	-	-	C	99283859	G	C	99283859	3	2	27	1	0	0	0	0	1	0	0	0	12348	933	33	2	1112	2	POU3F2	6	99283859	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09	55085893	99283859	71831208	13	1349										
FAM26F	0	genome.wustl.edu	37	chr6	116784535	116784535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ctatctccagttagttttctGcagctgaaattctggaaaat	7	8	3	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	116784535	116784535	G	A	SNP	FAM26F	ENST00000368605	human	ensembl	69_37n	1	known	silent	c.615	p.L205	0.886	NULL	NULL	-	no_errors	FAM26F	HGNC	ENSG00000188820	81	0	0	63	12	16	-	-	-	A	116784535	G	A	116784535	2	1	27	1	0	0	0	0	0	0	0	1	5597	1306	46	4		4	FAM26F	6	116784535	Silent	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09	17500676	116784535	54330532	14	1350										
ACTL6B	0	genome.wustl.edu	37	chr7	100243916	100243916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gatccaggggctgaacttgcGctccatggtgctgttgctgg	15	10	0	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	100243916	100243916	G	A	SNP	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	missense	c.1156	p.R386C	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	58	0	0	37	19	33.93	-	-	-	A	100243916	G	A	100243916	3	1	27	1	0	0	0	0	1	0	0	0	199	1087	38	1	132	1	ACTL6B	7	100243916	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		100243916	58894747	15	1351										
FLNC	0	genome.wustl.edu	37	chr7	128496897	128496897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ctggaagtcccttcaagatcCgcgttggggagcagagccag	14	11	1	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	128496897	128496897	C	T	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.7483	p.R2495C	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	47	0	0	38	6	13.64	-	-	-	T	128496897	C	T	128496897	3	4	27	1	0	0	0	0	1	0	0	0	5981	652	23	1	7661	1	FLNC	7	128496897	Missense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	28252981	128496897	30641766	16	1352										
GIMAP8	0	genome.wustl.edu	37	chr7	150164191	150164191	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	atcattattgtcttcactcgGaaggatgatttgggggatga	12	5	3	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	150164191	150164191	G	T	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	silent	c.405	p.R135	0.006	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	26	0	0	38	5	11.63	-	-	-	T	150164191	G	T	150164191	2	4	27	1	0	0	0	0	0	0	0	1	6437	1161	41	2		2	GIMAP8	7	150164191	Silent	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09	21667294	150164191	8974472	17	1353										
ABCB8	0	genome.wustl.edu	37	chr7	150737592	150737592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	tcccctcccacaggtggtccGggggctgagtgcaggtgccc	15	15	0	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	150737592	150737592	G	A	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	missense	c.1310	p.R437Q	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	34	0	0	51	18	26.09	-	-	-	A	150737592	G	A	150737592	3	1	27	1	0	0	0	0	1	0	0	0	47	1116	39	1	1301	1	ABCB8	7	150737592	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09	573401	150737592	8401071	18	1354										
ITIH2	0	genome.wustl.edu	37	chr10	7773953	7773953	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	atagagagcgttatcacggcGacttcggtacttccacttat	9	10	1	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	7773953	7773953	G	A	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	silent	c.1641	p.A547	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	14	0	0	15	4	21.05	-	-	-	A	7773953	G	A	7773953	2	1	27	1	0	0	0	0	0	0	0	1	7958	1045	37	1		1	ITIH2	10	7773953	Silent	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		7773953	127760794	19	1355										
ECHDC3	0	genome.wustl.edu	37	chr10	11789358	11789358	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ttcttcacaggaacatcgtcTtgagcaatcccaagaagagg	9	10	3	3			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	11789358	11789358	T	C	SNP	ECHDC3	ENST00000379215	human	ensembl	69_37n	1	known	silent	c.181	p.L61	0.998	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC3	HGNC	ENSG00000134463	40	0	0	30	4	11.76	-	-	-	C	11789358	T	C	11789358	2	2	27	1	0	0	0	0	0	0	0	1	4930	1606	56	5		5	ECHDC3	10	11789358	Silent	SNP	T	TCGA-A2-A0CO-01A-13D-A228-09	4015405	11789358	123745389	20	1356										
CAMK1D	0	genome.wustl.edu	37	chr10	12856243	12856243	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	aaaatgactccaagctctttGagcagatcctcaaggcggaa	9	10	2	3			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	12856243	12856243	G	C	SNP	CAMK1D	ENST00000378847	human	ensembl	69_37n	1	known	missense	c.691	p.E231Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049	45	0	0	49	15	23.44	-	-	-	C	12856243	G	C	12856243	3	2	27	1	0	0	0	0	1	0	0	0	2622	1291	45	2	717	2	CAMK1D	10	12856243	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09	1066885	12856243	122678504	21	1357										
SLC39A13	0	genome.wustl.edu	37	chr11	47434951	47434952	+	Frame_Shift_Ins	INS	-	-	C													0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ctccttctcctggccctaggINScccccaacaaagaccccact							TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	11	47434951	47434952	-	C	INS	SLC39A13	ENST00000362021	human	ensembl	69_37n	1	known	frame_shift_ins	c.538_539	p.N182fs	1.000:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915	55	0	0	50	9	15.25	-	-	-	C	47434952	-	C	47434951	7	5	27	1	0	1	1	0	0	0	0	0	14705	1217	42	0	552	0	SLC39A13	11	47434951	Frame_Shift_Ins	INS	-	TCGA-A2-A0CO-01A-13D-A228-09		47434951	87571565	22	1358										
MLL2	0	genome.wustl.edu	37	chr12	49443899	49443899	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ggtcacaggggccagctcctCggggtccaggagcacagggg	18	12	1	0			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	12	49443899	49443899	C	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	nonsense	c.3472	p.E1158*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	32	0	0	46	7	13.21	-	-	-	A	49443899	C	A	49443899	4	1	27	1	0	0	0	0	0	1	0	0	9692	893	31	3	13317	3	MLL2	12	49443899	Nonsense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		49443899	84407996	23	1359										
CDH1	0	genome.wustl.edu	37	chr16	68845757	68845757	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	tggtcaccactgggctggacCgagaggtcaggggtcaggag	18	9	3	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	16	68845757	68845757	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1003	p.R335*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	23	0	0	17	21	55.26	-	-	-	T	68845757	C	T	68845757	4	4	27	1	0	0	0	0	0	1	0	0	3124	644	23	1	1029	1	CDH1	16	68845757	Nonsense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		68845757	21508996	24	1360										
NCOR1	0	genome.wustl.edu	37	chr17	15973687	15973688	+	Frame_Shift_Del	DEL	AT	AT	-													0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	tcgcctgctttcacatcctcAtattttccccgttctaccac							TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	15973687	15973688	AT	-	DEL	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_del	c.4305_4304	p.Y1435fs	0.288:0.998	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	50	0	0	25	15	35.71	-	-	-	-	15973688	AT	-	15973687	7	5	27	1	0	1	0	1	0	0	0	0	10307	224	8	0	3081	0	NCOR1	17	15973687	Frame_Shift_Del	DEL	AT	TCGA-A2-A0CO-01A-13D-A228-09		15973687	65221523	25	1361										
TNS4	0	genome.wustl.edu	37	chr17	38638409	38638409	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gggatggtgagtttgcagggCagggccagggccatgatgga	20	6	0	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	38638409	38638409	C	A	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	silent	c.1644	p.L548	1.000	pfscan_SH2	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	20	0	0	18	4	18.18	-	-	-	A	38638409	C	A	38638409	2	1	27	1	0	0	0	0	0	0	0	1	16440	697	25	4		4	TNS4	17	38638409	Silent	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	22664722	38638409	42556801	26	1362										
SCN4A	0	genome.wustl.edu	37	chr17	62045591	62045591	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	cagcgcacacacttctgcctCaggtttcccatgaagagctg	9	14	2	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	62045591	62045591	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.828	p.L276	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	42	0	0	49	20	28.99	-	-	-	T	62045591	C	T	62045591	2	4	27	1	0	0	0	0	0	0	0	1	14008	813	29	2		2	SCN4A	17	62045591	Silent	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	23407182	62045591	19149619	27	1363										
B4GALT6	0	genome.wustl.edu	37	chr18	29246241	29246244	+	Frame_Shift_Del	DEL	TTTA	TTTA	-													0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gtaccgttgagcgtactgttTttatttgtgtacagcctgat							TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	TTTA	TTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	18	29246241	29246244	TTTA	-	DEL	B4GALT6	ENST00000306851	human	ensembl	69_37n	-1	known	frame_shift_del	c.210_207	p.N69fs	1.000:1.000:1.000:0.987	NULL	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT6	HGNC	ENSG00000118276	55	0	0	44	17	27.87	-	-	-	-	29246244	TTTA	-	29246241	7	5	27	1	0	1	0	1	0	0	0	0	1279	1838	64	0	970	0	B4GALT6	18	29246241	Frame_Shift_Del	DEL	TTTA	TCGA-A2-A0CO-01A-13D-A228-09		29246241	48831007	28	1364										
PRKCG	0	genome.wustl.edu	37	chr19	54403868	54403868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	acccctgcatcgtccagggaCctgaagctggacaatgtgat	11	12	0	2			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	19	54403868	54403868	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	silent	c.1440	p.D480	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	36	0	0	42	6	12.5	-	-	-	T	54403868	C	T	54403868	2	4	27	1	0	0	0	0	0	0	0	1	12593	506	18	4		4	PRKCG	19	54403868	Silent	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		54403868	4725115	29	1365										
ZNF74	0	genome.wustl.edu	37	chr22	20760662	20760662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	gcgagaagcccttcaagtgcGccgactgcgggaagggcttc	15	12	1	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	22	20760662	20760662	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	69_37n	1	known	missense	c.1339	p.A447T	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252	40	0	0	41	16	28.07	-	-	-	A	20760662	G	A	20760662	3	1	27	1	0	0	0	0	1	0	0	0	18221	1087	38	1	1357	1	ZNF74	22	20760662	Missense_Mutation	SNP	G	TCGA-A2-A0CO-01A-13D-A228-09		20760662	30543904	30	1366										
ELFN2	0	genome.wustl.edu	37	chr22	37769141	37769141	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ctgctgggcggagaccccctTccagtaatcaaggatgtcat	11	12	2	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	22	37769141	37769141	T	C	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.2434	p.K812E	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	58	0	0	46	26	36.11	-	-	-	C	37769141	T	C	37769141	3	2	27	1	0	0	0	0	1	0	0	0	5095	1792	62	5	32	5	ELFN2	22	37769141	Missense_Mutation	SNP	T	TCGA-A2-A0CO-01A-13D-A228-09	17008479	37769141	13535425	31	1367										
DMD	0	genome.wustl.edu	37	chrX	32482759	32482759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	atccccaagggcaggccattCctccttcagaaaaacatcaa	6	14	2	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	X	32482759	32482759	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.3220	p.E1074K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	60	0	0	56	9	13.85	-	-	-	T	32482759	C	T	32482759	3	4	27	1	0	0	0	0	1	0	0	0	4616	864	30	2	8304	2	DMD	23	32482759	Missense_Mutation	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09		32482759	122787801	32	1368										
TSPAN6	0	genome.wustl.edu	37	chrX	99891533	99891533	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.476095689345818	1.784	5.94666666666667	1.04941176470588	1	1	0	ttcccgacctgagctcccgcCgctcagggtcacacccccca	8	21	2	1			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	X	99891533	99891533	C	T	SNP	TSPAN6	ENST00000496771	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN6	HGNC	ENSG00000000003	63	0	0	53	6	10.17	-	-	-	T	99891533	C	T	99891533	1	4	27	0	1	0	0	0	0	0	0	0	16747	667	23	1		1	TSPAN6	23	99891533	RNA	SNP	C	TCGA-A2-A0CO-01A-13D-A228-09	67408774	99891533	55379027	33	1369										
BCAR3	0	genome.wustl.edu	37	chr1	94057926	94057926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cagtttctcgggggtcctgtCcatgatgtgcctctccttgg	12	12	2	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	94057926	94057926	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.382	p.D128N	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	69	0	0	50	21	29.58	-	-	-	T	94057926	C	T	94057926	3	4	28	1	0	0	0	0	1	0	0	0	1353	855	30	2	2131	2	BCAR3	1	94057926	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		94057926	155192695	1	1370										
AP4B1	0	genome.wustl.edu	37	chr1	114445454	114445455	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tcaccatttccataaaaacaINSccagacatgtccaagccttg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	114445454	114445455	-	G	INS	AP4B1	ENST00000256658	human	ensembl	69_37n	-1	known	frame_shift_ins	c.144_143	p.V49fs	1.000:1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu	-	no_errors	AP4B1	HGNC	ENSG00000134262	130	0	0	98	62	38.75	-	-	-	G	114445455	-	G	114445454	7	5	28	1	0	1	1	0	0	0	0	0	752	146	6	0	2111	0	AP4B1	1	114445454	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	20387528	114445454	134805167	2	1371										
DENND4B	0	genome.wustl.edu	37	chr1	153916828	153916829	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cacgaagtaatccaccagccINSgggggggccgctcctccgcc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	153916828	153916829	-	G	INS	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.23_22	p.R8fs	1.000:1.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	18	0	0	8	2	20	-	-	-	G	153916829	-	G	153916828	7	5	28	1	0	1	1	0	0	0	0	0	4470	652	23	0	4575	0	DENND4B	1	153916828	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	39471374	153916828	95333793	3	1372										
PIGM	0	genome.wustl.edu	37	chr1	160000642	160000643	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aaagcaagatgagctgtggcINSaggaatgcagcaattcccag							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	160000642	160000643	-	A	INS	PIGM	ENST00000368090	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.P297fs	0.948:1.000	pfam_Mannosyltransferase_DXD	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315	353	0	0	202	48	19.2	-	-	-	A	160000643	-	A	160000642	7	5	28	1	0	1	1	0	0	0	0	0	11966	697	25	0	387	0	PIGM	1	160000642	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	6083814	160000642	89249979	4	1373										
FAM129A	0	genome.wustl.edu	37	chr1	184764568	184764568	+	Frame_Shift_Del	DEL	C	C	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cctccccatgggcctcgggaCagggaggttgggcctccctc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	184764568	184764568	C	-	DEL	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	frame_shift_del	c.2330	p.C777fs	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	135	0	0	89	56	37.58	-	-	-	-	184764568	C	-	184764568	7	5	28	1	0	1	0	1	0	0	0	0	5476	478	17	0	460	0	FAM129A	1	184764568	Frame_Shift_Del	DEL	C	TCGA-A2-A0CP-01A-11W-A050-09	24763926	184764568	64486053	5	1374										
PKP1	0	genome.wustl.edu	37	chr1	201287868	201287868	+	Frame_Shift_Del	DEL	A	A	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggtgcgatggcaatagcaacAtgtcccgggaagtggtggac							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	201287868	201287868	A	-	DEL	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	frame_shift_del	c.1177	p.M393fs	0.994	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	97	0	0	84	129	57.33	-	-	-	-	201287868	A	-	201287868	7	5	28	1	0	1	0	1	0	0	0	0	12058	217	8	0	1199	0	PKP1	1	201287868	Frame_Shift_Del	DEL	A	TCGA-A2-A0CP-01A-11W-A050-09	16523300	201287868	47962753	6	1375										
NID1	0	genome.wustl.edu	37	chr1	236201470	236201470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gctgcagcagaagcccgtggCgtagtccctgcactctgcgt	13	14	1	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	236201470	236201470	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.1219	p.A407T	0.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	100	0	0	105	32	23.19	-	-	-	T	236201470	C	T	236201470	3	4	28	1	0	0	0	0	1	0	0	0	10486	768	27	1	2588	1	NID1	1	236201470	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	34913602	236201470	13049151	7	1376										
SF3B14	0	genome.wustl.edu	37	chr2	24291262	24291262	+	Frame_Shift_Del	DEL	C	C	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tcccgataggtgatcacatgCattcttggcatcaaagatgt							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	24291262	24291262	C	-	DEL	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	frame_shift_del	c.217	p.A73fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	176	0	0	68	38	35.51	-	-	-	-	24291262	C	-	24291262	7	5	28	1	0	1	0	1	0	0	0	0	14238	710	25	0	168	0	SF3B14	2	24291262	Frame_Shift_Del	DEL	C	TCGA-A2-A0CP-01A-11W-A050-09		24291262	218908111	8	1377	11	2								
SF3B14	0	genome.wustl.edu	37	chr2	24291264	24291264	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ccgataggtgatcacatgcaTtcttggcatcaaagatgtcc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	24291264	24291264	T	-	DEL	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	frame_shift_del	c.215	p.N72fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	174	0	0	68	38	35.85	-	-	-	-	24291264	T	-	24291264	7	5	28	1	0	1	0	1	0	0	0	0	14238	1493	52	0	170	0	SF3B14	2	24291264	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09	2	24291264	218908109	9	1378	11	2								
SNRNP200	0	genome.wustl.edu	37	chr2	96949670	96949671	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gagagcgaagagctgagtgcINScacaatgcgaatgggccgct							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	96949670	96949671	-	A	INS	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4465_4464	p.A1488fs	1.000:1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	58	0	0	57	37	39.36	-	-	-	A	96949671	-	A	96949670	7	5	28	1	0	1	1	0	0	0	0	0	14941	739	26	0	2001	0	SNRNP200	2	96949670	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	72658406	96949670	146249703	10	1379										
RGPD4	0	genome.wustl.edu	37	chr2	108479275	108479275	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gaaataaaacattctacaccAtctcctaccaaatattcact	1	12	3	0			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	108479275	108479275	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	silent	c.2343	p.P781	0.994	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	27	0	0	21	4	16	-	-	-	G	108479275	A	G	108479275	2	3	28	1	0	0	0	0	0	0	0	1	13371	204	8	5		5	RGPD4	2	108479275	Silent	SNP	A	TCGA-A2-A0CP-01A-11W-A050-09	11529605	108479275	134720098	11	1380										
ACOXL	0	genome.wustl.edu	37	chr2	111551702	111551703	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	accgagaggggccatgggagINScaacgcgagagggatccaga							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	111551702	111551703	-	A	INS	ACOXL	ENST00000439055	human	ensembl	69_37n	1	known	frame_shift_ins	c.296_297	p.S99fs	1.000:1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	217	0	0	260	1150	81.56	-	-	-	A	111551703	-	A	111551702	7	5	28	1	0	1	1	0	0	0	0	0	161	971	34	0	310	0	ACOXL	2	111551702	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	3072427	111551702	131647671	12	1381										
IQSEC1	0	genome.wustl.edu	37	chr3	12950804	12950804	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tgcttctccatctcttggacTtccgcaatggactcccgcag							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	12950804	12950804	T	-	DEL	IQSEC1	ENST00000273221	human	ensembl	69_37n	-1	known	frame_shift_del	c.2589	p.V864fs	1.000	smart_Pleckstrin_homology	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC1	HGNC	ENSG00000144711	64	0	0	14	2	12.5	-	-	-	-	12950804	T	-	12950804	7	5	28	1	0	1	0	1	0	0	0	0	7871	1606	56	0	863	0	IQSEC1	3	12950804	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09		12950804	185071626	13	1382										
MYRIP	0	genome.wustl.edu	37	chr3	40275393	40275393	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	caacatctccacagaagtccTgaaagtcatcaatgccacag	6	13	3	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	40275393	40275393	T	C	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.1949	p.L650P	1.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	92	0	0	71	17	19.32	-	-	-	C	40275393	T	C	40275393	3	2	28	1	0	0	0	0	1	0	0	0	10172	1580	55	5	1991	5	MYRIP	3	40275393	Missense_Mutation	SNP	T	TCGA-A2-A0CP-01A-11W-A050-09	27324589	40275393	157747037	14	1383										
PFKFB4	0	genome.wustl.edu	37	chr3	48561136	48561136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ccggggcacagcccacacctGctgccttgtcgaggaagtag	13	14	0	0			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	48561136	48561136	G	T	SNP	PFKFB4	ENST00000232375	human	ensembl	69_37n	-1	known	missense	c.1220	p.A407E	1.000	pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	57	0	0	95	17	15.18	-	-	-	T	48561136	G	T	48561136	3	4	28	1	0	0	0	0	1	0	0	0	11837	1319	46	4	205	4	PFKFB4	3	48561136	Missense_Mutation	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09	8285743	48561136	149461294	15	1384										
PDE12	0	genome.wustl.edu	37	chr3	57542741	57542741	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggcggagcccgaggtcggtgTcccctcgtcattgtctccct							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	57542741	57542741	T	-	DEL	PDE12	ENST00000311180	human	ensembl	69_37n	1	known	frame_shift_del	c.635	p.V212fs	0.544	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	47	0	0	44	13	20.97	-	-	-	-	57542741	T	-	57542741	7	5	28	1	0	1	0	1	0	0	0	0	11705	1667	58	0	637	0	PDE12	3	57542741	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09	8981605	57542741	140479689	16	1385										
DIRC2	0	genome.wustl.edu	37	chr3	122545885	122545885	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gcagcagggcgcatattaaaGatcgcatagaggctgtgtta	13	7	0	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	122545885	122545885	G	A	SNP	DIRC2	ENST00000261038	human	ensembl	69_37n	1	known	missense	c.676	p.D226N	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463	110	0	0	178	62	25.83	-	-	-	A	122545885	G	A	122545885	3	1	28	1	0	0	0	0	1	0	0	0	4570	942	33	2	686	2	DIRC2	3	122545885	Missense_Mutation	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09	65003144	122545885	75476545	17	1386										
PLXND1	0	genome.wustl.edu	37	chr3	129281687	129281687	+	Frame_Shift_Del	DEL	C	C	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gggcacattcttgcagaaggCctccaggatcttctccttga							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	129281687	129281687	C	-	DEL	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_del	c.4768	p.A1590fs	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	88	0	0	29	26	46.43	-	-	-	-	129281687	C	-	129281687	7	5	28	1	0	1	0	1	0	0	0	0	12201	739	26	0	1049	0	PLXND1	3	129281687	Frame_Shift_Del	DEL	C	TCGA-A2-A0CP-01A-11W-A050-09	6735802	129281687	68740743	18	1387										
PLXND1	0	genome.wustl.edu	37	chr3	129282067	129282067	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cacacagcagcaggaagaatGgctcccccaccgtctcctga							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	129282067	129282067	G	-	DEL	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_del	c.4538	p.P1513fs	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	54	0	0	37	34	47.89	-	-	-	-	129282067	G	-	129282067	7	5	28	1	0	1	0	1	0	0	0	0	12201	1348	47	0	1283	0	PLXND1	3	129282067	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	380	129282067	68740363	19	1388										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0	95	21	18.1	-	-	-	A	178938934	G	A	178938934	3	1	28	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09	49656867	178938934	19083496	20	1389										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	83	0	0	64	31	32.63	-	-	-	G	178952085	A	G	178952085	3	3	28	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0CP-01A-11W-A050-09	13151	178952085	19070345	21	1390										
MRFAP1L1	0	genome.wustl.edu	37	chr4	6711224	6711224	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	caggtacgcccgcccgtgctCgcgtataagagacgcgatgt	13	13	0	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	4	6711224	6711224	C	T	SNP	MRFAP1L1	ENST00000320848	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	0.245	NULL	NULL	-	no_errors	MRFAP1L1	HGNC	ENSG00000178988	60	0	0	63	43	40.57	-	-	-	T	6711224	C	T	6711224	3	4	28	1	0	0	0	0	1	0	0	0	9834	893	31	1	254	1	MRFAP1L1	4	6711224	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		6711224	184443052	22	1391										
MYO10	0	genome.wustl.edu	37	chr5	16935911	16935912	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cttacctcggtgaagaagttINSatccattgttccagcgcagt							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	16935911	16935912	-	G	INS	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7_6	p.N2fs	1.000:0.999	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	36	0	0	9	5	35.71	-	-	-	G	16935912	-	G	16935911	7	5	28	1	0	1	1	0	0	0	0	0	10134	1754	61	0	6333	0	MYO10	5	16935911	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09		16935911	163979349	23	1392										
MAP3K1	0	genome.wustl.edu	37	chr5	56161284	56161284	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aaactttaaagaattttgagGtagtttttaataaatgctta	6	2	0	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	56161284	56161284	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	splice_site	c.1152+1	e5+1	1.000	-	-	-	no_errors	MAP3K1	HGNC	ENSG00000095015	51	0	0	41	7	14.58	-	-	-	T	56161284	G	T	56161284	5	4	28	1	0	0	0	0	0	0	1	0	9314	1275	44	4	1171	4	MAP3K1	5	56161284	Splice_Site	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09	39225373	56161284	124753976	24	1393										
MAP3K1	0	genome.wustl.edu	37	chr5	56170973	56170973	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ccctgctgttggcaaatgggGagagcactggaaattctggg	15	8	1	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	56170973	56170973	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.1801	p.E601*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	199	0	0	190	69	26.64	-	-	-	T	56170973	G	T	56170973	4	4	28	1	0	0	0	0	0	1	0	0	9314	1175	41	2	1839	2	MAP3K1	5	56170973	Nonsense_Mutation	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09	9689	56170973	124744287	25	1394										
PCDHB8	0	genome.wustl.edu	37	chr5	140558352	140558352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tgcccctgaatttgagcagcCtttctatagggtgcagatct	10	10	2	3			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	140558352	140558352	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.737	p.P246L	0.036	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	78	0	0	36	33	47.83	-	-	-	T	140558352	C	T	140558352	3	4	28	1	0	0	0	0	1	0	0	0	11621	681	24	4	739	4	PCDHB8	5	140558352	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	84387379	140558352	40356908	26	1395										
PCDHGA2	0	genome.wustl.edu	37	chr5	140718636	140718636	+	Frame_Shift_Del	DEL	A	A	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cagggccgggcagattcgctAttctgtgcgggaagagatcg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	140718636	140718636	A	-	DEL	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	frame_shift_del	c.98	p.Y33fs	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	92	0	0	63	30	31.58	-	-	-	-	140718636	A	-	140718636	7	5	28	1	0	1	0	1	0	0	0	0	11627	449	16	0	100	0	PCDHGA2	5	140718636	Frame_Shift_Del	DEL	A	TCGA-A2-A0CP-01A-11W-A050-09	160284	140718636	40196624	27	1396										
TBC1D9B	0	genome.wustl.edu	37	chr5	179302103	179302104	+	Frame_Shift_Ins	INS	-	-	C													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cagcgagatgctggagatcaINScccccaggtcctgcatcttc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	179302103	179302104	-	C	INS	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1985_1984	p.V662fs	1.000:1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	45	0	0	15	2	11.76	-	-	-	C	179302104	-	C	179302103	7	5	28	1	0	1	1	0	0	0	0	0	15723	159	6	0	1811	0	TBC1D9B	5	179302103	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	38583467	179302103	1613157	28	1397										
BTN3A2	0	genome.wustl.edu	37	chr6	26368860	26368860	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggtgaagacgctgatctgccCtgtcacctgttcccgaccat	10	14	2	3			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	26368860	26368860	C	T	SNP	BTN3A2	ENST00000356386	human	ensembl	69_37n	1	known	silent	c.153	p.P51	0.681	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A2	HGNC	ENSG00000186470	229	0	0	254	47	15.61	-	-	-	T	26368860	C	T	26368860	2	4	28	1	0	0	0	0	0	0	0	1	1572	668	24	4		4	BTN3A2	6	26368860	Silent	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		26368860	144746207	29	1398										
TCP11	0	genome.wustl.edu	37	chr6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggagccgctcttgtcttcctINSgggggggtcctgaggtttcg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	34	0	0	17	3	15	-	-	-	G	35108560	-	G	35108559	7	5	28	1	0	1	1	0	0	0	0	0	15808	1580	55	0	1512	0	TCP11	6	35108559	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	8739699	35108559	136006508	30	1399										
CCND3	0	genome.wustl.edu	37	chr6	41909275	41909275	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	agtaggaggcgcggggtacgTagcgctcctccaggcggagc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909275	41909275	T	-	DEL	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_del	c.113	p.Y38fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	16	0	0	7	5	41.67	-	-	-	-	41909275	T	-	41909275	7	5	28	1	0	1	0	1	0	0	0	0	2947	1638	57	0	785	0	CCND3	6	41909275	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09	6800716	41909275	129205792	31	1400	12	4								
CCND3	0	genome.wustl.edu	37	chr6	41909280	41909281	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aggcgcggggtacgtagcgcINStcctccaggcggagcaggct							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909280	41909281	-	A	INS	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_ins	c.108_107	p.E36fs	1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	14	0	0	6	4	40	-	-	-	A	41909281	-	A	41909280	7	5	28	1	0	1	1	0	0	0	0	0	2947	796	28	0	790	0	CCND3	6	41909280	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	5	41909280	129205787	32	1401	12	4								
CCND3	0	genome.wustl.edu	37	chr6	41909284	41909284	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cgcggggtacgtagcgctccTccaggcggagcaggctctgc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909284	41909284	T	-	DEL	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_del	c.104	p.E35fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	14	0	0	6	4	40	-	-	-	-	41909284	T	-	41909284	7	5	28	1	0	1	0	1	0	0	0	0	2947	1551	54	0	794	0	CCND3	6	41909284	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09	4	41909284	129205783	33	1402	12	4								
CCND3	0	genome.wustl.edu	37	chr6	41909290	41909291	+	Frame_Shift_Ins	INS	-	-	AT													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tacgtagcgctcctccaggcINSggagcaggctctgcaggaca							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909290	41909291	-	AT	INS	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_ins	c.98_97	p.R33fs	1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	12	0	0	5	4	44.44	-	-	-	AT	41909291	-	AT	41909290	7	5	28	1	0	1	1	0	0	0	0	0	2947	768	27	0	800	0	CCND3	6	41909290	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	6	41909290	129205777	34	1403	12	4								
POLR1C	0	genome.wustl.edu	37	chr6	43484915	43484915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gggggagtttggggttcgcaAtgtaagccttgtggccttga	17	6	0	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	43484915	43484915	A	G	SNP	POLR1C	ENST00000372389	human	ensembl	69_37n	1	known	missense	c.68	p.N23S	1.000	NULL	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,superfamily_DNA-dir_RNA_pol_insert,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR1C	HGNC	ENSG00000171453	195	0	0	134	35	20.71	-	-	-	G	43484915	A	G	43484915	3	3	28	1	0	0	0	0	1	0	0	0	12285	115	4	5	70	5	POLR1C	6	43484915	Missense_Mutation	SNP	A	TCGA-A2-A0CP-01A-11W-A050-09	1575625	43484915	127630152	35	1404										
EPB41L2	0	genome.wustl.edu	37	chr6	131206388	131206389	+	Frame_Shift_Ins	INS	-	-	T													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aaatccttcataagactttgINSgtccatgacaccaatcggag							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	131206388	131206389	-	T	INS	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1681_1680	p.Q560fs	1.000:1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	209	0	0	157	256	61.99	-	-	-	T	131206389	-	T	131206388	7	5	28	1	0	1	1	0	0	0	0	0	5190	1357	47	0	1368	0	EPB41L2	6	131206388	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	87721473	131206388	39908679	36	1405										
TAGAP	0	genome.wustl.edu	37	chr6	159457074	159457075	+	Frame_Shift_Ins	INS	-	-	T													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	catcgctcaggcaggggagaINSgagtccgtggccagggagtg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	159457074	159457075	-	T	INS	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1981_1980	p.S660fs	0.000:0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	89	0	0	40	20	33.33	-	-	-	T	159457075	-	T	159457074	7	5	28	1	0	1	1	0	0	0	0	0	15629	304	11	0	218	0	TAGAP	6	159457074	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	28250686	159457074	11657993	37	1406										
SNTG1	0	genome.wustl.edu	37	chr8	51449300	51449300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aggtgggagaagcgatggtgCgacctcagactgatccctct	14	10	2	3			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	8	51449300	51449300	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	1	known	silent	c.612	p.C204	1.000	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	137	0	0	122	22	15.28	-	-	-	T	51449300	C	T	51449300	2	4	28	1	0	0	0	0	0	0	0	1	14963	776	27	1		1	SNTG1	8	51449300	Silent	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		51449300	94914722	38	1407										
GAPVD1	0	genome.wustl.edu	37	chr9	128117999	128117999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cagtttctttatggtgcaatGgcccaggatgtcatatggca	11	8	2	0			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	128117999	128117999	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.3915	p.M1305I	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	62	0	0	65	20	23.53	-	-	-	A	128117999	G	A	128117999	3	1	28	1	0	0	0	0	1	0	0	0	6289	1348	47	4	4005	4	GAPVD1	9	128117999	Missense_Mutation	SNP	G	TCGA-A2-A0CP-01A-11W-A050-09		128117999	13095432	39	1408										
GARNL3	0	genome.wustl.edu	37	chr9	130153011	130153011	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gaagaaagccaaggaggcccCaagccaggggcagtgaggtc	16	10	0	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	130153011	130153011	C	A	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	silent	c.2835	p.P945	0.998	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	134	0	0	163	32	16.33	-	-	-	A	130153011	C	A	130153011	2	1	28	1	0	0	0	0	0	0	0	1	6291	581	21	4		4	GARNL3	9	130153011	Silent	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	2035012	130153011	11060420	40	1409										
ASS1	0	genome.wustl.edu	37	chr9	133346274	133346274	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aacccgtggagcatggatgaGaacctcatgcacatcaggta							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	133346274	133346274	G	-	DEL	ASS1	ENST00000334909	human	ensembl	69_37n	1	known	frame_shift_del	c.549	p.N184fs	1.000	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707	73	0	0	27	45	61.64	-	-	-	-	133346274	G	-	133346274	7	5	28	1	0	1	0	1	0	0	0	0	1065	933	33	0	571	0	ASS1	9	133346274	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	3193263	133346274	7867157	41	1410										
SPAG6	0	genome.wustl.edu	37	chr10	22634774	22634775	+	Frame_Shift_Ins	INS	-	-	C													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cggagcccgaacccccgtcgINSccccccgcgcactgagtccc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	10	22634774	22634775	-	C	INS	SPAG6	ENST00000376603	human	ensembl	69_37n	1	known	frame_shift_ins	c.148_149	p.R52fs	0.000:0.000	NULL	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	27	0	0	16	2	11.11	-	-	-	C	22634775	-	C	22634774	7	5	28	1	0	1	1	0	0	0	0	0	15073	1102	38	0		0	SPAG6	10	22634774	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09		22634774	112899973	42	1411										
NFRKB	0	genome.wustl.edu	37	chr11	129752350	129752350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tctgttgctcacttactcttCcttgatagcaggaattgcca	7	11	3	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	11	129752350	129752350	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385K	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	193	0	0	138	29	17.37	-	-	-	T	129752350	C	T	129752350	3	4	28	1	0	0	0	0	1	0	0	0	10456	864	30	2	2893	2	NFRKB	11	129752350	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		129752350	5254166	43	1412										
METTL7A	0	genome.wustl.edu	37	chr12	51323842	51323842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ctggaaggccctggagcgggCcagcttctctaagctgaagc	14	12	1	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	51323842	51323842	C	T	SNP	METTL7A	ENST00000332160	human	ensembl	69_37n	1	known	missense	c.644	p.A215V	0.791	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel,pfam_SAM-MeTfrase_NodS-related	-	no_errors	METTL7A	HGNC	ENSG00000185432	114	0	0	96	23	19.33	-	-	-	T	51323842	C	T	51323842	3	4	28	1	0	0	0	0	1	0	0	0	9576	739	26	4	650	4	METTL7A	12	51323842	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		51323842	82528053	44	1413										
KRT8	0	genome.wustl.edu	37	chr12	53295661	53295662	+	Frame_Shift_Ins	INS	-	-	T													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gctcacttgttcttgaagtcINSctccaccagcccctgcatgt							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	53295661	53295662	-	T	INS	KRT8	ENST00000293308	human	ensembl	69_37n	-1	known	frame_shift_ins	c.520_519	p.D173fs	1.000:1.000	pfam_F,prints_Keratin_II,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	158	0	0	55	48	46.6	-	-	-	T	53295662	-	T	53295661	7	5	28	1	0	1	1	0	0	0	0	0	8546	855	30	0	959	0	KRT8	12	53295661	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	1971819	53295661	80556234	45	1414	13	2								
KRT8	0	genome.wustl.edu	37	chr12	53295662	53295663	+	Frame_Shift_Ins	INS	-	-	T													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ctcacttgttcttgaagtccINStccaccagcccctgcatgtt							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	53295662	53295663	-	T	INS	KRT8	ENST00000293308	human	ensembl	69_37n	-1	known	frame_shift_ins	c.519_518	p.D174fs	1.000:1.000	pfam_F,prints_Keratin_II,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	156	0	0	50	48	48.98	-	-	-	T	53295663	-	T	53295662	7	5	28	1	0	1	1	0	0	0	0	0	8546	680	24	0	960	0	KRT8	12	53295662	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	1	53295662	80556233	46	1415	13	2								
HSPA2	0	genome.wustl.edu	37	chr14	65008807	65008807	+	Frame_Shift_Del	DEL	A	A	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	agacagctggcggtgtcatgAccccactcatcaagaggaac							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	65008807	65008807	A	-	DEL	HSPA2	ENST00000247207	human	ensembl	69_37n	1	known	frame_shift_del	c.1240	p.T414fs	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	22	0	0	16	9	36	-	-	-	-	65008807	A	-	65008807	7	5	28	1	0	1	0	1	0	0	0	0	7464	275	10	0	1242	0	HSPA2	14	65008807	Frame_Shift_Del	DEL	A	TCGA-A2-A0CP-01A-11W-A050-09		65008807	42340733	47	1416										
SPTB	0	genome.wustl.edu	37	chr14	65262236	65262237	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	atggtagttctctttctccaINSgctcctgagccaggtcctcc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	65262236	65262237	-	G	INS	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1463_1462	p.L488fs	1.000:1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	69	0	0	55	37	40.22	-	-	-	G	65262237	-	G	65262236	7	5	28	1	0	1	1	0	0	0	0	0	15209	188	7	0	5692	0	SPTB	14	65262236	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	253429	65262236	42087304	48	1417										
GPHN	0	genome.wustl.edu	37	chr14	67555794	67555794	+	Splice_Site	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gatggctatgctgtccgaggTaaatattttggttttcttaa							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	67555794	67555794	T	-	DEL	GPHN	ENST00000478722	human	ensembl	69_37n	1	known	splice_site_del	c.1237+2	e12+2	1.000	-	-	-	no_errors	GPHN	HGNC	ENSG00000171723	104	0	0	71	76	49.67	-	-	-	-	67555794	T	-	67555794	8	5	28	1	0	1	0	1	0	0	1	0	6660	1652	57	0	1285	0	GPHN	14	67555794	Splice_Site	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09	2293558	67555794	39793746	49	1418										
C14orf169	0	genome.wustl.edu	37	chr14	73958591	73958594	+	RNA	DEL	CCAG	CCAG	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gccgccgcgtggtccctgtaCcaggccggctgctccctgcg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	CCAG	CCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	73958591	73958594	CCAG	-	DEL	C14orf169	ENST00000531973	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242	11	0	0	4	11	73.33	-	-	-	-	73958594	CCAG	-	73958591	6	5	28	0	1	1	0	1	0	0	0	0	1770	507	18	0		0	C14orf169	14	73958591	RNA	DEL	CCAG	TCGA-A2-A0CP-01A-11W-A050-09	6402797	73958591	33390949	50	1419										
HERC2	0	genome.wustl.edu	37	chr15	28389827	28389828	+	Frame_Shift_Del	DEL	GG	GG	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ccccttccttaccagcagctGgcatgatgggatagacggtg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	28389827	28389828	GG	-	DEL	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	frame_shift_del	c.11132_11131	p.P3711fs	1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	97	0	0	101	65	39.16	-	-	-	-	28389828	GG	-	28389827	7	5	28	1	0	1	0	1	0	0	0	0	7109	1348	47	0	3460	0	HERC2	15	28389827	Frame_Shift_Del	DEL	GG	TCGA-A2-A0CP-01A-11W-A050-09		28389827	74141565	51	1420	14	2								
HERC2	0	genome.wustl.edu	37	chr15	28389831	28389834	+	Frame_Shift_Del	DEL	TGAT	TGAT	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ttccttaccagcagctggcaTgatgggatagacggtgaagc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	TGAT	TGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	28389831	28389834	TGAT	-	DEL	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	frame_shift_del	c.11128_11125	p.I3709fs	1.000:1.000:1.000:1.000	superfamily_CUB	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	101	0	0	98	65	39.88	-	-	-	-	28389834	TGAT	-	28389831	7	5	28	1	0	1	0	1	0	0	0	0	7109	1464	51	0	3464	0	HERC2	15	28389831	Frame_Shift_Del	DEL	TGAT	TCGA-A2-A0CP-01A-11W-A050-09	4	28389831	74141561	52	1421	14	2								
MEIS2	0	genome.wustl.edu	37	chr15	37186997	37186997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tccatgcccatattcatgccCattccactcataggtcctag	5	15	2	0			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	37186997	37186997	C	T	SNP	MEIS2	ENST00000424352	human	ensembl	69_37n	-1	known	missense	c.1164	p.M388I	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	140	0	0	152	96	38.71	-	-	-	T	37186997	C	T	37186997	3	4	28	1	0	0	0	0	1	0	0	0	9539	594	21	4	336	4	MEIS2	15	37186997	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	8797166	37186997	65344395	53	1422										
PLCB2	0	genome.wustl.edu	37	chr15	40580976	40580977	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggtcctgctcacacagctctINSggggggcactcgcaggccct							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	40580976	40580977	-	G	INS	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3498_3497	p.E1167fs	0.029:0.000	NULL	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	74	0	0	20	3	13.04	-	-	-	G	40580977	-	G	40580976	7	5	28	1	0	1	1	0	0	0	0	0	12102	1567	55	0	63	0	PLCB2	15	40580976	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	3393979	40580976	61950416	54	1423										
LCMT2	0	genome.wustl.edu	37	chr15	43621743	43621743	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	actagggtgtgggagagggtGtctcccctagaagctgccag							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621743	43621743	G	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.945	p.D315fs	0.001	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	31	0	0	16	52	76.47	-	-	-	-	43621743	G	-	43621743	7	5	28	1	0	1	0	1	0	0	0	0	8733	1368	48	0	1119	0	LCMT2	15	43621743	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	3040767	43621743	58909649	55	1424	15	3								
LCMT2	0	genome.wustl.edu	37	chr15	43621750	43621751	+	Frame_Shift_Del	DEL	CT	CT	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tgtgggagagggtgtctcccCtagaagctgccagaatgaaa							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621750	43621751	CT	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.938_937	p.R313fs	0.000:0.001	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	32	0	0	16	44	72.13	-	-	-	-	43621751	CT	-	43621750	7	5	28	1	0	1	0	1	0	0	0	0	8733	681	24	0	1126	0	LCMT2	15	43621750	Frame_Shift_Del	DEL	CT	TCGA-A2-A0CP-01A-11W-A050-09	7	43621750	58909642	56	1425	15	3								
LCMT2	0	genome.wustl.edu	37	chr15	43621756	43621759	+	Frame_Shift_Del	DEL	GCTG	GCTG	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	agagggtgtctcccctagaaGctgccagaatgaaataatgg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GCTG	GCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621756	43621759	GCTG	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.932_929	p.A310fs	0.998:0.999:0.995:1.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	31	0	0	12	44	78.57	-	-	-	-	43621759	GCTG	-	43621756	7	5	28	1	0	1	0	1	0	0	0	0	8733	971	34	0	1132	0	LCMT2	15	43621756	Frame_Shift_Del	DEL	GCTG	TCGA-A2-A0CP-01A-11W-A050-09	6	43621756	58909636	57	1426	15	3								
CGNL1	0	genome.wustl.edu	37	chr15	57730943	57730943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggagagggtgggagaggaggCccttttcactagcgggaggc	20	7	1	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	57730943	57730943	C	T	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	missense	c.746	p.A249V	0.128	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	102	0	0	72	44	37.93	-	-	-	T	57730943	C	T	57730943	3	4	28	1	0	0	0	0	1	0	0	0	3333	739	26	4	748	4	CGNL1	15	57730943	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	14109187	57730943	44800449	58	1427										
ZNF48	0	genome.wustl.edu	37	chr16	30409493	30409494	+	Frame_Shift_Ins	INS	-	-	C													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gccctttggctgtgatgtgtINSgtggaaaggagtttgcccgg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	30409493	30409494	-	C	INS	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	frame_shift_ins	c.922_923	p.C308fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	57	0	0	56	42	42.86	-	-	-	C	30409494	-	C	30409493	7	5	28	1	0	1	1	0	0	0	0	0	18030	1696	59	0	928	0	ZNF48	16	30409493	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09		30409493	59945260	59	1428										
ZNF646	0	genome.wustl.edu	37	chr16	31088769	31088769	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggaggaataccggcctttccGctgtggggactgtggccgta							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	31088769	31088769	G	-	DEL	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	frame_shift_del	c.1124	p.R375fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	20	0	0	8	5	38.46	-	-	-	-	31088769	G	-	31088769	7	5	28	1	0	1	0	1	0	0	0	0	18158	1087	38	0	1126	0	ZNF646	16	31088769	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	679276	31088769	59265984	60	1429										
PLEKHG4	0	genome.wustl.edu	37	chr16	67314191	67314191	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ctgcagatgagtcgggggatGcccagaggggcacagtagaa							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	67314191	67314191	G	-	DEL	PLEKHG4	ENST00000360461	human	ensembl	69_37n	1	known	frame_shift_del	c.244	p.A82fs	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155	41	0	0	10	12	52.17	-	-	-	-	67314191	G	-	67314191	7	5	28	1	0	1	0	1	0	0	0	0	12145	1319	46	0	246	0	PLEKHG4	16	67314191	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	36225422	67314191	23040562	61	1430										
CMIP	0	genome.wustl.edu	37	chr16	81739192	81739193	+	Frame_Shift_Del	DEL	GC	GC	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gaccccggtcacagacgctgGcctgctggccctgagctgtg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	81739192	81739193	GC	-	DEL	CMIP	ENST00000537098	human	ensembl	69_37n	1	known	frame_shift_del	c.2180_2181	p.G727fs	1.000:0.909	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815	9	0	0	2	7	77.78	-	-	-	-	81739193	GC	-	81739192	7	5	28	1	0	1	0	1	0	0	0	0	3608	1203	42	0	2276	0	CMIP	16	81739192	Frame_Shift_Del	DEL	GC	TCGA-A2-A0CP-01A-11W-A050-09	14425001	81739192	8615561	62	1431										
PHF23	0	genome.wustl.edu	37	chr17	7139066	7139066	+	Frame_Shift_Del	DEL	T	T	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	taatcttagcacaggagaggTggatccacgtcccacacagg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	7139066	7139066	T	-	DEL	PHF23	ENST00000320316	human	ensembl	69_37n	-1	known	frame_shift_del	c.1091	p.H364fs	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633	70	0	0	46	67	57.76	-	-	-	-	7139066	T	-	7139066	7	5	28	1	0	1	0	1	0	0	0	0	11909	1696	59	0	124	0	PHF23	17	7139066	Frame_Shift_Del	DEL	T	TCGA-A2-A0CP-01A-11W-A050-09		7139066	74056144	63	1432										
MYH10	0	genome.wustl.edu	37	chr17	8409779	8409780	+	Frame_Shift_Ins	INS	-	-	AG													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	tggccttttccagttcctgaINScgagtcttttcttccttctt							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	8409779	8409780	-	AG	INS	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3213_3212	p.Q1072fs	0.795:1.000	superfamily_HR1_rho-bd	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	211	0	0	116	145	55.56	-	-	-	AG	8409780	-	AG	8409779	7	5	28	1	0	1	1	0	0	0	0	0	10102	262	10	0	2848	0	MYH10	17	8409779	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	1270713	8409779	72785431	64	1433										
MYH2	0	genome.wustl.edu	37	chr17	10436912	10436912	+	Frame_Shift_Del	DEL	G	G	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cttcttgctatcaatgaattGcccttcagggattgcacttg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	10436912	10436912	G	-	DEL	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	frame_shift_del	c.2218	p.Q740fs	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	135	0	0	129	213	59.66	-	-	-	-	10436912	G	-	10436912	7	5	28	1	0	1	0	1	0	0	0	0	10107	1328	46	0	3691	0	MYH2	17	10436912	Frame_Shift_Del	DEL	G	TCGA-A2-A0CP-01A-11W-A050-09	2027133	10436912	70758298	65	1434										
KRTAP4-9	0	genome.wustl.edu	37	chr17	39262140	39262140	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ccgcccctcttgctgtgaatCcagctgctgccgcccctgct	9	19	1	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	39262140	39262140	C	A	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	1	known	missense	c.500	p.S167Y	0.896	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	139	0	0	95	26	21.49	-	-	-	A	39262140	C	A	39262140	3	1	28	1	0	0	0	0	1	0	0	0	8611	855	30	2	502	2	KRTAP4-9	17	39262140	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	28825228	39262140	41933070	66	1435										
KATNAL2	0	genome.wustl.edu	37	chr18	44595970	44595973	+	Frame_Shift_Del	DEL	GGGT	GGGT	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ggattcagaaaaactcgttcGggtaggaattcttaattttg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GGGT	GGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	18	44595970	44595973	GGGT	-	DEL	KATNAL2	ENST00000245121	human	ensembl	69_37n	1	known	frame_shift_del	c.791_792	p.L266fs	1.000:1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216	207	0	0	193	146	42.94	-	-	-	-	44595973	GGGT	-	44595970	7	5	28	1	0	1	0	1	0	0	0	0	8040	1130	39	0	825	0	KATNAL2	18	44595970	Frame_Shift_Del	DEL	GGGT	TCGA-A2-A0CP-01A-11W-A050-09		44595970	33481278	67	1436										
ZNF878	0	genome.wustl.edu	37	chr19	12154864	12154864	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	ttccacattgcttacactcaTagggtttctctcctgtgtga	7	11	2	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	12154864	12154864	T	G	SNP	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	missense	c.1352	p.Y451S	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	108	0	0	109	20	15.5	-	-	-	G	12154864	T	G	12154864	3	3	28	1	0	0	0	0	1	0	0	0	18289	1406	49	5	247	5	ZNF878	19	12154864	Missense_Mutation	SNP	T	TCGA-A2-A0CP-01A-11W-A050-09		12154864	46974119	68	1437										
C19orf40	0	genome.wustl.edu	37	chr19	33464409	33464409	+	Frame_Shift_Del	DEL	A	A	-													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	gatgctgcattctttatgtcAccgaagctgatttggtggca							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	33464409	33464409	A	-	DEL	C19orf40	ENST00000588258	human	ensembl	69_37n	1	known	frame_shift_del	c.184	p.T62fs	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944	204	0	0	93	244	66.85	-	-	-	-	33464409	A	-	33464409	7	5	28	1	0	1	0	1	0	0	0	0	1941	159	6	0	190	0	C19orf40	19	33464409	Frame_Shift_Del	DEL	A	TCGA-A2-A0CP-01A-11W-A050-09	21309545	33464409	25664574	69	1438										
ALDH16A1	0	genome.wustl.edu	37	chr19	49969502	49969503	+	Frame_Shift_Ins	INS	-	-	G													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	cgcaagacgacttcgggcgtINSggggggcccgggtgcaggcc							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	49969502	49969503	-	G	INS	ALDH16A1	ENST00000293350	human	ensembl	69_37n	1	known	frame_shift_ins	c.1900_1901	p.A636fs	0.880:0.992	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618	46	0	0	18	2	10	-	-	-	G	49969503	-	G	49969502	7	5	28	1	0	1	1	0	0	0	0	0	488	1696	59	0	1954	0	ALDH16A1	19	49969502	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	16505093	49969502	9159481	70	1439										
MYH9	0	genome.wustl.edu	37	chr22	36702609	36702610	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aaggccccgggcagtgcggtINSctccgacatgccggccacct							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	22	36702609	36702610	-	A	INS	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1888_1887	p.T629fs	0.996:0.985	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	24	0	0	19	7	26.92	-	-	-	A	36702610	-	A	36702609	7	5	28	1	0	1	1	0	0	0	0	0	10114	1667	58	0	4098	0	MYH9	22	36702609	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09		36702609	14601957	71	1440										
MSL3	0	genome.wustl.edu	37	chrX	11783689	11783689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	aaccagccacccccaaaaggCgcaaagctgagccagaagca	9	15	0	2			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	11783689	11783689	C	T	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	missense	c.1012	p.R338C	1.000	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	136	0	0	122	26	17.57	-	-	-	T	11783689	C	T	11783689	3	4	28	1	0	0	0	0	1	0	0	0	9951	768	27	1	1046	1	MSL3	23	11783689	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09		11783689	143486871	72	1441										
AWAT2	0	genome.wustl.edu	37	chrX	69262054	69262054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	caccgatggtggttacaggcCgactatagggcagaaggccc	14	11	0	1			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	69262054	69262054	C	T	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	missense	c.830	p.R277Q	0.002	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	102	0	0	131	20	13.25	-	-	-	T	69262054	C	T	69262054	3	4	28	1	0	0	0	0	1	0	0	0	1239	652	23	1	179	1	AWAT2	23	69262054	Missense_Mutation	SNP	C	TCGA-A2-A0CP-01A-11W-A050-09	57478365	69262054	86008506	73	1442										
PLXNB3	0	genome.wustl.edu	37	chrX	153037690	153037691	+	Frame_Shift_Ins	INS	-	-	AAGC													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	accactgggcccgtccgggtINSggccattaagagccagccac							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	153037690	153037691	-	AAGC	INS	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	frame_shift_ins	c.2792_2793	p.A932fs	0.987:0.958	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	14	0	0	4	2	33.33	-	-	-	AAGC	153037691	-	AAGC	153037690	7	5	28	1	0	1	1	0	0	0	0	0	12199	1696	59	0	2899	0	PLXNB3	23	153037690	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	83775636	153037690	2232870	74	1443										
PLXNA3	0	genome.wustl.edu	37	chrX	153692649	153692650	+	Frame_Shift_Ins	INS	-	-	A													0.0298507462686567	2	0.878020390389329	1.08059701492537	NA	1.08059701492537	0.333333333333333	0.930327025915261	0	agctccgagctcttaccaggINSgggcatggtcagtgggttgg							TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	153692649	153692650	-	A	INS	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	frame_shift_ins	c.1821_1822	p.G607fs	0.342:0.461	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	18	0	0	5	7	58.33	-	-	-	A	153692650	-	A	153692649	7	5	28	1	0	1	1	0	0	0	0	0	12195	1223	43	0	1847	0	PLXNA3	23	153692649	Frame_Shift_Ins	INS	-	TCGA-A2-A0CP-01A-11W-A050-09	654959	153692649	1577911	75	1444										
PADI4	0	genome.wustl.edu	37	chr1	17668843	17668843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	cagcgtggtcttccgcgtggCgccctggatcatgaccccca	12	16	2	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	17668843	17668843	C	T	SNP	PADI4	ENST00000375448	human	ensembl	69_37n	1	known	missense	c.881	p.A294V	0.995	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339	57	0	0	31	30	49.18	-	-	-	T	17668843	C	T	17668843	3	4	29	1	0	0	0	0	1	0	0	0	11453	768	27	1	911	1	PADI4	1	17668843	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09		17668843	231581778	1	1445										
SLC9A1	0	genome.wustl.edu	37	chr1	27436074	27436074	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	aagtaggccatgtagctgtaGaggaagacgaagagcggctc	15	7	0	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	27436074	27436074	G	C	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	silent	c.1008	p.L336	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	47	0	0	30	17	36.17	-	-	-	C	27436074	G	C	27436074	2	2	29	1	0	0	0	0	0	0	0	1	14798	929	33	2		2	SLC9A1	1	27436074	Silent	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09	9767231	27436074	221814547	2	1446										
MACF1	0	genome.wustl.edu	37	chr1	39853331	39853331	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ctggatccagtgcagctagaGtccagtctcctaagatcaaa	9	11	2	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	39853331	39853331	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.8631	p.E2877D	0.959	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	81	0	0	58	8	12.12	-	-	-	C	39853331	G	C	39853331	3	2	29	1	0	0	0	0	1	0	0	0	9211	1020	36	4	14992	4	MACF1	1	39853331	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09	12417257	39853331	209397290	3	1447										
DOCK10	0	genome.wustl.edu	37	chr2	225729785	225729785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tgaggtcataaagtgccacaCtcacaaaaaaaggctcaatc	7	10	3	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	225729785	225729785	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1277	p.S426N	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	89	0	0	28	21	42.86	-	-	-	T	225729785	C	T	225729785	3	4	29	1	0	0	0	0	1	0	0	0	4720	565	20	4	5463	4	DOCK10	2	225729785	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09		225729785	17469588	4	1448										
BOC	0	genome.wustl.edu	37	chr3	113005658	113005658	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gaacctggaatgcagctctcCccggggccactggtgcgtgt	14	13	1	0			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	113005658	113005658	C	T	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	silent	c.3297	p.S1099	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	122	0	0	56	33	37.08	-	-	-	T	113005658	C	T	113005658	2	4	29	1	0	0	0	0	0	0	0	1	1486	610	22	4		4	BOC	3	113005658	Silent	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09		113005658	85016772	5	1449										
PLXNA1	0	genome.wustl.edu	37	chr3	126736736	126736736	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ctgggcagcacaaggtcacgGtgcgtctgtccaccgggggt	16	12	2	0			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	126736736	126736736	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	splice_site	c.3660+1	e18+1	1.000	-	-	-	no_errors	PLXNA1	HGNC	ENSG00000114554	10	0	0	7	8	53.33	-	-	-	A	126736736	G	A	126736736	5	1	29	1	0	0	0	0	0	0	1	0	12193	1275	44	4	3731	4	PLXNA1	3	126736736	Splice_Site	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09	13731078	126736736	71285694	6	1450										
COL6A5	0	genome.wustl.edu	37	chr3	130116502	130116502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gcctttgttccagggccaccCccagctggaatcctacctcc	8	18	0	0			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	130116502	130116502	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3644	p.P1215L	0.043	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	135	0	0	127	85	39.91	-	-	-	T	130116502	C	T	130116502	3	4	29	1	0	0	0	0	1	0	0	0	3732	623	22	4	3674	4	COL6A5	3	130116502	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09	3379766	130116502	67905928	7	1451										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32497905	32497905	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ccacaatgtgcacttacgtcGggtgtccccagccaaagcca	9	15	0	0			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	6	32497905	32497905	G	T	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	silent	c.97	p.R33	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	121	1	0.82	37	38	50.67	-	-	-	T	32497905	G	T	32497905	2	4	29	1	0	0	0	0	0	0	0	1	7260	1124	39	3		3	HLA-DRB5	6	32497905	Silent	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		32497905	138617162	8	1452										
KCTD7	0	genome.wustl.edu	37	chr7	66103260	66103260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	agatgtgctgaatttcctgcGctcaggggacctcccaccca	10	14	1	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	66103260	66103260	G	T	SNP	KCTD7	ENST00000275532	human	ensembl	69_37n	1	known	missense	c.335	p.R112L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD7	HGNC	ENSG00000243335	87	0	0	75	44	36.97	-	-	-	T	66103260	G	T	66103260	3	4	29	1	0	0	0	0	1	0	0	0	8168	1087	38	3	345	3	KCTD7	7	66103260	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		66103260	93035403	9	1453										
MEPCE	0	genome.wustl.edu	37	chr7	100028415	100028415	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	cttgcttcgccactcaagacTggtcggaagcggcatagaca	11	12	1	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	100028415	100028415	T	A	SNP	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	silent	c.774	p.T258	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	23	0	0	23	13	35.14	-	-	-	A	100028415	T	A	100028415	2	1	29	1	0	0	0	0	0	0	0	1	9548	1567	55	5		5	MEPCE	7	100028415	Silent	SNP	T	TCGA-A2-A0CQ-01A-21W-A050-09	33925155	100028415	59110248	10	1454										
SSPO	0	genome.wustl.edu	37	chr7	149484837	149484838	+	RNA	INS	-	-	C													0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	acattatgccacgcggaggtINSccccccgcagcagcactatg							TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	149484837	149484838	-	C	INS	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	11	0	0	4	2	33.33	-	-	-	C	149484838	-	C	149484837	6	5	29	0	1	1	1	0	0	0	0	0	15280	1667	58	0		0	SSPO	7	149484837	RNA	INS	-	TCGA-A2-A0CQ-01A-21W-A050-09	49456422	149484837	9653826	11	1455										
GRHL2	0	genome.wustl.edu	37	chr8	102661656	102661656	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ttccagtgctcttgtacgtgAggaaggagactgacgatgtg	14	7	1	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	102661656	102661656	A	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	missense	c.1627	p.R543W	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	135	0	0	114	88	43.56	-	-	-	T	102661656	A	T	102661656	3	4	29	1	0	0	0	0	1	0	0	0	6815	295	11	5	1681	5	GRHL2	8	102661656	Missense_Mutation	SNP	A	TCGA-A2-A0CQ-01A-21W-A050-09		102661656	43702366	12	1456										
KCNV1	0	genome.wustl.edu	37	chr8	110980575	110980575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	aaggccaagacaagaattccCgataatatacacatgaaggc	8	9	0	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	110980575	110980575	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	silent	c.1245	p.S415	0.234	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	81	0	0	41	20	32.79	-	-	-	T	110980575	C	T	110980575	2	4	29	1	0	0	0	0	0	0	0	1	8148	639	23	1		1	KCNV1	8	110980575	Silent	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09	8318919	110980575	35383447	13	1457										
IPPK	0	genome.wustl.edu	37	chr9	95381788	95381788	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ctggcatcctgcagacagggAgacagtgcaatcatgatgga	13	9	1	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	9	95381788	95381788	A	G	SNP	IPPK	ENST00000287996	human	ensembl	69_37n	-1	known	silent	c.1230	p.S410	0.979	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080	24	0	0	27	20	40.82	-	-	-	G	95381788	A	G	95381788	2	3	29	1	0	0	0	0	0	0	0	1	7855	291	11	5		5	IPPK	9	95381788	Silent	SNP	A	TCGA-A2-A0CQ-01A-21W-A050-09		95381788	45831643	14	1458										
DIP2C	0	genome.wustl.edu	37	chr10	323355	323355	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tgcttctccccacgggagttGatggggatgacgccgatgtc	14	11	1	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	323355	323355	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.4581	p.I1527	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	137	0	0	104	42	28.57	-	-	-	A	323355	G	A	323355	2	1	29	1	0	0	0	0	0	0	0	1	4565	1280	45	2		2	DIP2C	10	323355	Silent	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		323355	135211392	15	1459										
C10orf68	0	genome.wustl.edu	37	chr10	33134181	33134181	+	Frame_Shift_Del	DEL	G	G	-													0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	atttatatagagactgataaGgaacacttagcagatgatac							TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	33134181	33134181	G	-	DEL	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	frame_shift_del	c.1284	p.E429fs	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	13	0	0	4	3	42.86	-	-	-	-	33134181	G	-	33134181	7	5	29	1	0	1	0	1	0	0	0	0	1623	1015	35	0		0	C10orf68	10	33134181	Frame_Shift_Del	DEL	G	TCGA-A2-A0CQ-01A-21W-A050-09	32810826	33134181	102400566	16	1460	16	2								
C10orf68	0	genome.wustl.edu	37	chr10	33134185	33134186	+	Frame_Shift_Ins	INS	-	-	T													0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tatagagactgataaggaacINSacttagcagatgatactgga							TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	33134185	33134186	-	T	INS	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	frame_shift_ins	c.1288_1289	p.H430fs	0.000:0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	13	0	0	4	3	42.86	-	-	-	T	33134186	-	T	33134185	7	5	29	1	0	1	1	0	0	0	0	0	1623	493	17	0		0	C10orf68	10	33134185	Frame_Shift_Ins	INS	-	TCGA-A2-A0CQ-01A-21W-A050-09	4	33134185	102400562	17	1461	16	2								
ANXA11	0	genome.wustl.edu	37	chr10	81928877	81928878	+	Frame_Shift_Ins	INS	-	-	G													0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gcccctgggggctgctgtccINSggggggtggcatgggctggc							TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	81928877	81928878	-	G	INS	ANXA11	ENST00000265447	human	ensembl	69_37n	-1	known	frame_shift_ins	c.409_408	p.G136fs	0.686:0.396	NULL	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXI,prints_AnnexinVII	-	no_errors	ANXA11	HGNC	ENSG00000122359	30	0	0	43	5	10.42	-	-	-	G	81928878	-	G	81928877	7	5	29	1	0	1	1	0	0	0	0	0	715	661	23	0	1156	0	ANXA11	10	81928877	Frame_Shift_Ins	INS	-	TCGA-A2-A0CQ-01A-21W-A050-09	48794692	81928877	53605870	18	1462										
IGSF9B	0	genome.wustl.edu	37	chr11	133790102	133790102	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	taggccggggccggggctggGgctcataccaccgggtgtcc	18	13	1	0			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	11	133790102	133790102	G	C	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.3518	p.P1173R	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	8	0	0	10	4	28.57	-	-	-	C	133790102	G	C	133790102	3	2	29	1	0	0	0	0	1	0	0	0	7660	1232	43	4	539	4	IGSF9B	11	133790102	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		133790102	1216414	19	1463										
OR6C2	0	genome.wustl.edu	37	chr12	55846918	55846918	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gactctataaagaggattgcAtttctctcaaagaagtagaa	8	6	3	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	12	55846918	55846918	A	G	SNP	OR6C2	ENST00000322678	human	ensembl	69_37n	1	known	silent	c.921	p.A307	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	171	0	0	131	83	38.6	-	-	-	G	55846918	A	G	55846918	2	3	29	1	0	0	0	0	0	0	0	1	11264	204	8	5		5	OR6C2	12	55846918	Silent	SNP	A	TCGA-A2-A0CQ-01A-21W-A050-09		55846918	78004977	20	1464										
AKAP11	0	genome.wustl.edu	37	chr13	42875568	42875568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	agtcaatgacatcattggaaGttacaaaaatggttgatgaa	9	4	2	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	13	42875568	42875568	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.2686	p.V896I	0.104	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	16	0	0	16	11	40.74	-	-	-	A	42875568	G	A	42875568	3	1	29	1	0	0	0	0	1	0	0	0	447	1029	36	4	2708	4	AKAP11	13	42875568	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		42875568	72294310	21	1465										
TRIP11	0	genome.wustl.edu	37	chr14	92499550	92499550	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tcttacctctgatctcaagaTtgcatgaatggcttcaattt	6	9	4	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	14	92499550	92499550	T	C	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.187	p.I63V	0.513	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	38	0	0	26	8	23.53	-	-	-	C	92499550	T	C	92499550	3	2	29	1	0	0	0	0	1	0	0	0	16651	1493	52	5	5832	5	TRIP11	14	92499550	Missense_Mutation	SNP	T	TCGA-A2-A0CQ-01A-21W-A050-09		92499550	14849990	22	1466										
CTCF	0	genome.wustl.edu	37	chr16	67654645	67654645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gctctcatactggagagcgtCcgtttcagtgcagtttgtgc	12	10	2	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	16	67654645	67654645	C	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.1132	p.P378A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	181	0	0	41	103	70.55	-	-	-	G	67654645	C	G	67654645	3	3	29	1	0	0	0	0	1	0	0	0	4032	855	30	2	1146	2	CTCF	16	67654645	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09		67654645	22700108	23	1467										
NEK8	0	genome.wustl.edu	37	chr17	27068449	27068449	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	agagagcgaagtgtactcttGgggcaaaggggcgcgaggtc	18	7	1	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	27068449	27068449	G	C	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.1910	p.W637S	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	80	0	0	21	26	54.17	-	-	-	C	27068449	G	C	27068449	3	2	29	1	0	0	0	0	1	0	0	0	10402	1357	47	4	1964	4	NEK8	17	27068449	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		27068449	54126761	24	1468										
MFSD11	0	genome.wustl.edu	37	chr17	74772590	74772590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tttctgtattctgaagacagCgccccagcatttgccatctt	7	12	3	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	74772590	74772590	C	T	SNP	MFSD11	ENST00000585865	human	ensembl	69_37n	1	putative	missense	c.415	p.R139C	0.218	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MFSD11	HGNC	ENSG00000092931	103	0	0	114	69	37.7	-	-	-	T	74772590	C	T	74772590	3	4	29	1	0	0	0	0	1	0	0	0	9600	767	27	1	1198	1	MFSD11	17	74772590	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09	47704141	74772590	6422620	25	1469										
MADCAM1	0	genome.wustl.edu	37	chr19	501786	501786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gcctcccgacaccacctcccCggagcctcccgacaagacct	7	22	0	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	501786	501786	C	A	SNP	MADCAM1	ENST00000215637	human	ensembl	69_37n	1	known	missense	c.785	p.P262Q	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like	-	no_errors	MADCAM1	HGNC	ENSG00000099866	13	0	0	40	17	29.82	-	-	-	A	501786	C	A	501786	3	1	29	1	0	0	0	0	1	0	0	0	9218	652	23	3	799	3	MADCAM1	19	501786	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09		501786	58627197	26	1470										
UPF1	0	genome.wustl.edu	37	chr19	18965708	18965708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	gatgcagagcgcattgaaaaCgtttgccgtggatgagacct	13	8	0	3			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	18965708	18965708	C	T	SNP	UPF1	ENST00000262803	human	ensembl	69_37n	1	known	missense	c.1286	p.T429M	0.997	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom	-	no_errors	UPF1	HGNC	ENSG00000005007	82	0	0	31	22	41.51	-	-	-	T	18965708	C	T	18965708	3	4	29	1	0	0	0	0	1	0	0	0	17100	536	19	1	1324	1	UPF1	19	18965708	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09	18463922	18965708	40163275	27	1471										
ZNF578	0	genome.wustl.edu	37	chr19	53014601	53014601	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	agtgtaatgaatgtggaaagTccttcagttacaagtcatcc	9	7	2	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	53014601	53014601	T	A	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.967	p.S323T	0.016	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	135	0	0	126	72	36.36	-	-	-	A	53014601	T	A	53014601	3	1	29	1	0	0	0	0	1	0	0	0	18106	1667	58	5	977	5	ZNF578	19	53014601	Missense_Mutation	SNP	T	TCGA-A2-A0CQ-01A-21W-A050-09	34048893	53014601	6114382	28	1472										
CLTCL1	0	genome.wustl.edu	37	chr22	19203720	19203720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	taaaggctttgacagtgaccGaaatctcttcaggatcccgt	9	10	2	2			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	22	19203720	19203720	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	69_37n	-1	known	missense	c.2966	p.S989L	0.996	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	105	0	0	56	49	46.67	-	-	-	A	19203720	G	A	19203720	3	1	29	1	0	0	0	0	1	0	0	0	3597	1059	37	1	2012	1	CLTCL1	22	19203720	Missense_Mutation	SNP	G	TCGA-A2-A0CQ-01A-21W-A050-09		19203720	32100846	29	1473										
TST	0	genome.wustl.edu	37	chr22	37407107	37407108	+	Frame_Shift_Ins	INS	-	-	G													0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	cctgggacacacggctctctINSgggggggcccggcgaaacca							TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	22	37407107	37407108	-	G	INS	TST	ENST00000249042	human	ensembl	69_37n	-1	known	frame_shift_ins	c.855_854	p.E286fs	0.014:0.995	superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TST	HGNC	ENSG00000128311	26	0	0	25	3	10.71	-	-	-	G	37407108	-	G	37407107	7	5	29	1	0	1	1	0	0	0	0	0	16769	1567	55	0	42	0	TST	22	37407107	Frame_Shift_Ins	INS	-	TCGA-A2-A0CQ-01A-21W-A050-09	18203387	37407107	13897459	30	1474										
PTCHD1	0	genome.wustl.edu	37	chrX	23397729	23397729	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	tgcatgctgctgtcaccaagAtccaggttccaaggcctggt	11	12	1	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	23397729	23397729	A	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.373	p.I125F	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	45	0	0	49	18	26.87	-	-	-	T	23397729	A	T	23397729	3	4	29	1	0	0	0	0	1	0	0	0	12812	333	12	5	379	5	PTCHD1	23	23397729	Missense_Mutation	SNP	A	TCGA-A2-A0CQ-01A-21W-A050-09		23397729	131872831	31	1475										
AFF2	0	genome.wustl.edu	37	chrX	147744200	147744200	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0645161290322581	2	0.93167154273872	0.885542168674699	1.41686746987952	0.644030668127054	1	1	0	ttgagaacagctttgggaatCtgtcatttggaacactcttg	10	7	3	1			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	147744200	147744200	C	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.952	p.L318M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	136	0	0	82	56	40.58	-	-	-	A	147744200	C	A	147744200	3	1	29	1	0	0	0	0	1	0	0	0	357	912	32	2	962	2	AFF2	23	147744200	Missense_Mutation	SNP	C	TCGA-A2-A0CQ-01A-21W-A050-09	124346471	147744200	7526360	32	1476										
KIF1B	0	genome.wustl.edu	37	chr1	10318573	10318573	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cgaagatccctgttttgcatCtcaaaaccgtgtgtacaatg	8	10	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	10318573	10318573	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.206	p.S69F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	38	0	0	36	11	23.4	-	-	-	T	10318573	C	T	10318573	3	4	30	1	0	0	0	0	1	0	0	0	8336	913	32	2	216	2	KIF1B	1	10318573	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		10318573	238932048	1	1477										
CASZ1	0	genome.wustl.edu	37	chr1	10703221	10703221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tggggggggctctcacctggGaggggggcacgcggtcgaag	22	9	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	10703221	10703221	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.4016	p.S1339F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	13	0	0	21	9	30	-	-	-	A	10703221	G	A	10703221	3	1	30	1	0	0	0	0	1	0	0	0	2710	1174	41	2	1275	2	CASZ1	1	10703221	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	384648	10703221	238547400	2	1478										
UBR4	0	genome.wustl.edu	37	chr1	19484363	19484363	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cggcgcccatggggagaggaGagcacacacatagccacccg	14	14	0	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	19484363	19484363	G	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.5706	p.L1902	0.985	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	28	0	0	28	5	15.15	-	-	-	C	19484363	G	C	19484363	2	2	30	1	0	0	0	0	0	0	0	1	17001	929	33	2		2	UBR4	1	19484363	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	8781142	19484363	229766258	3	1479										
ARID1A	0	genome.wustl.edu	37	chr1	27057727	27057727	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	accagcaaagtcctcaccctCagcagcagcagccaccctac	6	19	2	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	27057727	27057727	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.1435	p.Q479*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	61	0	0	79	12	13.19	-	-	-	T	27057727	C	T	27057727	4	4	30	1	0	0	0	0	0	1	0	0	915	827	29	2	1445	2	ARID1A	1	27057727	Nonsense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	7573364	27057727	222192894	4	1480										
SCMH1	0	genome.wustl.edu	37	chr1	41540970	41540970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atggggcagagatgggatggGaaattagggtcttgggtgtc	19	3	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	41540970	41540970	G	A	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	missense	c.869	p.S290F	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	79	0	0	87	11	11.22	-	-	-	A	41540970	G	A	41540970	3	1	30	1	0	0	0	0	1	0	0	0	13996	1174	41	2	1145	2	SCMH1	1	41540970	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	14483243	41540970	207709651	5	1481										
RAVER2	0	genome.wustl.edu	37	chr1	65210970	65210970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gcccctcagccgaagcgcacGagggcgccccggacccgatg	14	18	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	65210970	65210970	G	A	SNP	RAVER2	ENST00000294428	human	ensembl	69_37n	1	known	missense	c.115	p.E39K	0.002	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER2	HGNC	ENSG00000162437	13	0	0	15	4	21.05	-	-	-	A	65210970	G	A	65210970	3	1	30	1	0	0	0	0	1	0	0	0	13178	1059	37	1	117	1	RAVER2	1	65210970	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	23670000	65210970	184039651	6	1482										
SYCP1	0	genome.wustl.edu	37	chr1	115537679	115537679	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gttaaggagcctaataacgtGaaacttatagttaatatttt	7	4	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	115537679	115537679	G	A	SNP	SYCP1	ENST00000477590	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SYCP1	HGNC	ENSG00000198765	37	0	0	33	5	13.16	-	-	-	A	115537679	G	A	115537679	1	1	30	0	1	0	0	0	0	0	0	0	15523	1305	45	2		2	SYCP1	1	115537679	RNA	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	50326709	115537679	133712942	7	1483										
ANKRD35	0	genome.wustl.edu	37	chr1	145557076	145557076	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gccctacacttggccaccatCtcctgccagccacagtgtgt	8	17	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	145557076	145557076	C	G	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	missense	c.288	p.I96M	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	24	0	0	23	6	20.69	-	-	-	G	145557076	C	G	145557076	3	3	30	1	0	0	0	0	1	0	0	0	663	903	32	2	302	2	ANKRD35	1	145557076	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	30019397	145557076	103693545	8	1484										
FLG	0	genome.wustl.edu	37	chr1	152283647	152283647	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtcagcccaagaggcagcttCatggtgacgtgaccctgagt	13	11	2	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	152283647	152283647	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3715	p.E1239K	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	142	0	0	134	27	16.77	-	-	-	T	152283647	C	T	152283647	3	4	30	1	0	0	0	0	1	0	0	0	5968	835	29	2	8474	2	FLG	1	152283647	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	6726571	152283647	96966974	9	1485										
FLG	0	genome.wustl.edu	37	chr1	152287821	152287821	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gatttgccgaaattccttttCcagaagttccttcagctctt	6	11	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	152287821	152287821	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.112	p.E38Q	1.000	pfam_S100_Ca-bd_sub	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	75	0	0	63	14	18.18	-	-	-	G	152287821	C	G	152287821	3	3	30	1	0	0	0	0	1	0	0	0	5968	864	30	2	12081	2	FLG	1	152287821	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	4174	152287821	96962800	10	1486										
SPTA1	0	genome.wustl.edu	37	chr1	158592794	158592794	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttctgtagaggcagctgtttCtccagcaatttctgtctgtg	10	9	4	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	158592794	158592794	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6099	p.E2033D	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	47	0	0	62	10	13.89	-	-	-	G	158592794	C	G	158592794	3	3	30	1	0	0	0	0	1	0	0	0	15207	912	32	2	1200	2	SPTA1	1	158592794	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	6304973	158592794	90657827	11	1487										
RAB7L1	0	genome.wustl.edu	37	chr1	205739862	205739862	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atcagcatgagctacttaccTcatagcctcattaatatttt	4	10	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	205739862	205739862	T	G	SNP	RAB7L1	ENST00000235932	human	ensembl	69_37n	-1	known	silent	c.499	p.R167	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB7L1	HGNC	ENSG00000117280	35	0	0	55	10	15.38	-	-	-	G	205739862	T	G	205739862	2	3	30	1	0	0	0	0	0	0	0	1	13038	1565	54	5		5	RAB7L1	1	205739862	Silent	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	47147068	205739862	43510759	12	1488										
LYST	0	genome.wustl.edu	37	chr1	235922444	235922444	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aatagtgctgtggcttcgctGgaaggaggccaatcccttta	12	9	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	235922444	235922444	G	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	nonsense	c.6709	p.Q2237*	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	24	0	0	20	3	13.04	-	-	-	A	235922444	G	A	235922444	4	1	30	1	0	0	0	0	0	1	0	0	9195	1357	47	4	4820	4	LYST	1	235922444	Nonsense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	30182582	235922444	13328177	13	1489										
TFB2M	0	genome.wustl.edu	37	chr1	246729197	246729197	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atagatttgcgccagggtctCagccaatctccgatcggtta	10	11	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	1	246729197	246729197	C	T	SNP	TFB2M	ENST00000366514	human	ensembl	69_37n	-1	known	missense	c.244	p.E82K	0.000	smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851	53	0	0	42	5	10.64	-	-	-	T	246729197	C	T	246729197	3	4	30	1	0	0	0	0	1	0	0	0	15889	835	29	2	978	2	TFB2M	1	246729197	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	10806753	246729197	2521424	14	1490										
APOB	0	genome.wustl.edu	37	chr2	21224748	21224748	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtcaatcaatcttttggattCagcaataaatttttcatagt	5	6	5	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	2	21224748	21224748	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.13546	p.E4516K	0.001	pfam_ApoB100_C	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	30	0	0	30	4	11.76	-	-	-	T	21224748	C	T	21224748	3	4	30	1	0	0	0	0	1	0	0	0	787	835	29	2	149	2	APOB	2	21224748	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		21224748	221974625	15	1491										
TSN	0	genome.wustl.edu	37	chr2	122520632	122520632	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggatgtagaagattatctctCaggagttctaattcttgcca	9	7	4	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	2	122520632	122520632	C	G	SNP	TSN	ENST00000389682	human	ensembl	69_37n	1	known	nonsense	c.425	p.S142*	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSN	HGNC	ENSG00000211460	41	0	0	33	4	10.81	-	-	-	G	122520632	C	G	122520632	4	3	30	1	0	0	0	0	0	1	0	0	16725	838	29	2	443	2	TSN	2	122520632	Nonsense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	101295884	122520632	120678741	16	1492										
SMPD4	0	genome.wustl.edu	37	chr2	130915062	130915062	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cacatcccgccctgagccagTtgctctgctgcccccacggg	10	19	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	2	130915062	130915062	T	C	SNP	SMPD4	ENST00000455548	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SMPD4	HGNC	ENSG00000136699	44	0	0	43	7	14	-	-	-	C	130915062	T	C	130915062	1	2	30	0	1	0	0	0	0	0	0	0	14896	1740	60	5		5	SMPD4	2	130915062	RNA	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	8394430	130915062	112284311	17	1493										
LYPD6B	0	genome.wustl.edu	37	chr2	150017281	150017281	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttttttatctctggtaggctGattactctgagtgcaaacct	8	8	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	2	150017281	150017281	G	A	SNP	LYPD6B	ENST00000280115	human	ensembl	69_37n	1	known	silent	c.9	p.L3	0.454	NULL	NULL	-	no_errors	LYPD6B	HGNC	ENSG00000150556	30	0	0	44	5	10.2	-	-	-	A	150017281	G	A	150017281	2	1	30	1	0	0	0	0	0	0	0	1	9182	1277	45	2		2	LYPD6B	2	150017281	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	19102219	150017281	93182092	18	1494										
UGT1A4	0	genome.wustl.edu	37	chr2	234681046	234681046	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cgccccgcagcccacgacctCacctggtaccagtaccattc	7	20	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	2	234681046	234681046	C	T	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1446	p.L482	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	40	0	0	33	6	15.38	-	-	-	T	234681046	C	T	234681046	2	4	30	1	0	0	0	0	0	0	0	1	17044	813	29	2		2	UGT1A4	2	234681046	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	84663765	234681046	8518327	19	1495										
CAND2	0	genome.wustl.edu	37	chr3	12856719	12856719	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gccaagtgcatcgcagccttGatcagctcgcggcctgacct	11	15	1	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	12856719	12856719	G	C	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	missense	c.1086	p.L362F	0.113	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	22	0	0	32	6	15.79	-	-	-	C	12856719	G	C	12856719	3	2	30	1	0	0	0	0	1	0	0	0	2641	1281	45	2	1116	2	CAND2	3	12856719	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		12856719	185165711	20	1496										
CAND2	0	genome.wustl.edu	37	chr3	12856792	12856792	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tgctcatccgccgcttcaaaGaacgcgaggagaacgtcaag	11	12	3	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	12856792	12856792	G	C	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	missense	c.1159	p.E387Q	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	22	0	0	33	5	13.16	-	-	-	C	12856792	G	C	12856792	3	2	30	1	0	0	0	0	1	0	0	0	2641	943	33	2	1189	2	CAND2	3	12856792	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	73	12856792	185165638	21	1497										
RBMS3	0	genome.wustl.edu	37	chr3	29529937	29529937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctctctctctttcaggtatgGaaaaattgtatctacaaagg	7	8	4	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	29529937	29529937	G	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.254	p.G85V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	27	0	0	24	6	20	-	-	-	T	29529937	G	T	29529937	3	4	30	1	0	0	0	0	1	0	0	0	13233	1174	41	2	264	2	RBMS3	3	29529937	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	16673145	29529937	168492493	22	1498										
PTH1R	0	genome.wustl.edu	37	chr3	46939404	46939404	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggccgctgggggcaccaggtGaggtggtggctgtgccctgt	20	10	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	46939404	46939404	G	C	SNP	PTH1R	ENST00000313049	human	ensembl	69_37n	1	known	missense	c.373	p.E125Q	0.958	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_parathyroid_rcpt	-	no_errors	PTH1R	HGNC	ENSG00000160801	27	0	0	42	6	12.5	-	-	-	C	46939404	G	C	46939404	3	2	30	1	0	0	0	0	1	0	0	0	12839	1291	45	2	387	2	PTH1R	3	46939404	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	17409467	46939404	151083026	23	1499										
SLMAP	0	genome.wustl.edu	37	chr3	57817203	57817203	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aaagtccaccatgtgaaattCtttccggtgacattatccag	7	10	1	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	57817203	57817203	C	G	SNP	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	missense	c.292	p.L98V	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	55	0	0	51	10	16.39	-	-	-	G	57817203	C	G	57817203	3	3	30	1	0	0	0	0	1	0	0	0	14838	913	32	2	298	2	SLMAP	3	57817203	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	10877799	57817203	140205227	24	1500										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	44	0	0	48	7	12.73	-	-	-	A	178936082	G	A	178936082	3	1	30	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	121118879	178936082	19086348	25	1501										
USP13	0	genome.wustl.edu	37	chr3	179448005	179448005	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gaaaccttcccagaatatttGactactcgcctttagatcca	5	12	0	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	3	179448005	179448005	G	C	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	missense	c.1117	p.D373H	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	69	0	0	59	9	13.24	-	-	-	C	179448005	G	C	179448005	3	2	30	1	0	0	0	0	1	0	0	0	17141	1290	45	2	1151	2	USP13	3	179448005	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	511923	179448005	18574425	26	1502										
TMEM33	0	genome.wustl.edu	37	chr4	41946820	41946820	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tttgttttaggcaaggggctCaaatagtttacctctgctga	10	7	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	4	41946820	41946820	C	T	SNP	TMEM33	ENST00000513558	human	ensembl	69_37n	1	putative	nonsense	c.208	p.Q70*	1.000	pfam_UPF0121	pfam_UPF0121	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM33	HGNC	ENSG00000109133	34	0	0	36	8	18.18	-	-	-	T	41946820	C	T	41946820	4	4	30	1	0	0	0	0	0	1	0	0	16251	838	29	2	425	2	TMEM33	4	41946820	Nonsense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		41946820	149207456	27	1503			1	2		2	2	15	C		5.019786e-05
TMEM33	0	genome.wustl.edu	37	chr4	41946834	41946834	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggggctcaaatagtttacctCtgctgagatctgtcttggac	11	9	4	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	4	41946834	41946834	C	A	SNP	TMEM33	ENST00000325094	human	ensembl	69_37n	1	known	missense	c.421	p.L141M	1.000	pfam_UPF0121	pfam_UPF0121	-	no_errors	TMEM33	HGNC	ENSG00000109133	33	0	0	39	8	17.02	-	-	-	A	41946834	C	A	41946834	3	1	30	1	0	0	0	0	1	0	0	0	16251	912	32	2	439	2	TMEM33	4	41946834	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	14	41946834	149207442	28	1504			1	2		2	2	15	C		5.019786e-05
UGT2B28	0	genome.wustl.edu	37	chr4	70152547	70152547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gggtcagtgataagtaacatGacagcagaaagggccaacgt	13	7	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	4	70152547	70152547	G	A	SNP	UGT2B28	ENST00000335568	human	ensembl	69_37n	1	known	missense	c.948	p.M316I	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226	100	0	0	139	17	10.9	-	-	-	A	70152547	G	A	70152547	3	1	30	1	0	0	0	0	1	0	0	0	17057	1290	45	2	958	2	UGT2B28	4	70152547	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	28205713	70152547	121001729	29	1505										
SPARCL1	0	genome.wustl.edu	37	chr4	88415285	88415285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agcatgctccctgggcaattCtgtctttctttcttggttat	8	10	4	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	4	88415285	88415285	C	G	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	missense	c.667	p.E223Q	0.005	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	61	0	0	47	8	14.55	-	-	-	G	88415285	C	G	88415285	3	3	30	1	0	0	0	0	1	0	0	0	15087	922	32	2	1359	2	SPARCL1	4	88415285	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	18262738	88415285	102738991	30	1506										
C5orf34	0	genome.wustl.edu	37	chr5	43492913	43492913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtactttgtcatcagagtagGcaagaaatcttcccacactg	8	10	3	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	5	43492913	43492913	G	T	SNP	C5orf34	ENST00000306862	human	ensembl	69_37n	-1	known	missense	c.1394	p.A465D	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244	39	0	0	31	4	11.43	-	-	-	T	43492913	G	T	43492913	3	4	30	1	0	0	0	0	1	0	0	0	2314	1203	42	4	542	4	C5orf34	5	43492913	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		43492913	137422347	31	1507										
PCDHGC5	0	genome.wustl.edu	37	chr5	140871163	140871163	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	caccggcctcggacggcagtGacttcacttttctaagaccc	9	15	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	5	140871163	140871163	G	A	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	missense	c.2356	p.D786N	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	37	0	0	55	10	15.38	-	-	-	A	140871163	G	A	140871163	3	1	30	1	0	0	0	0	1	0	0	0	11644	1290	45	2	2358	2	PCDHGC5	5	140871163	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	97378250	140871163	40044097	32	1508										
SLC36A1	0	genome.wustl.edu	37	chr5	150867671	150867671	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	accttctactcagagggcatGagccccctcaccatctttaa	6	15	4	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	5	150867671	150867671	G	C	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	missense	c.1287	p.M429I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	49	0	0	62	14	18.42	-	-	-	C	150867671	G	C	150867671	3	2	30	1	0	0	0	0	1	0	0	0	14682	1290	45	2	1325	2	SLC36A1	5	150867671	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	9996508	150867671	30047589	33	1509										
FGF18	0	genome.wustl.edu	37	chr5	170876186	170876186	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agacagacaccttcggtagtCaagtccggatcaagggcaag	12	10	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	5	170876186	170876186	C	G	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	missense	c.286	p.Q96E	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	36	0	0	43	5	10.42	-	-	-	G	170876186	C	G	170876186	3	3	30	1	0	0	0	0	1	0	0	0	5892	827	29	2	300	2	FGF18	5	170876186	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	20008515	170876186	10039074	34	1510										
FLT4	0	genome.wustl.edu	37	chr5	180056359	180056359	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tggctgacgttgtggatggtCaggatgctggagagttctgt	17	5	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	5	180056359	180056359	C	T	SNP	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	silent	c.885	p.L295	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	36	0	0	48	6	11.11	-	-	-	T	180056359	C	T	180056359	2	4	30	1	0	0	0	0	0	0	0	1	5990	813	29	2		2	FLT4	5	180056359	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	9180173	180056359	858901	35	1511										
KIAA0319	0	genome.wustl.edu	37	chr6	24559335	24559335	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cgggccacttcagcagctttGagaaccttgaaaggcggcct	12	12	1	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	6	24559335	24559335	G	C	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	silent	c.2640	p.L880	0.997	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	34	0	0	53	10	15.87	-	-	-	C	24559335	G	C	24559335	2	2	30	1	0	0	0	0	0	0	0	1	8220	1277	45	2		2	KIAA0319	6	24559335	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		24559335	146555732	36	1512										
TTBK1	0	genome.wustl.edu	37	chr6	43227338	43227338	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ccccagtgcgtgcccccccaGactcccccacaaccccagtc	6	24	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	6	43227338	43227338	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	missense	c.1318	p.D440N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	58	0	0	70	10	12.5	-	-	-	A	43227338	G	A	43227338	3	1	30	1	0	0	0	0	1	0	0	0	16773	942	33	2	1360	2	TTBK1	6	43227338	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	18668003	43227338	127887729	37	1513										
CDC5L	0	genome.wustl.edu	37	chr6	44371709	44371709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctgaggaaaactaccaagctCttgacgcagatttcaggaaa	9	9	2	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	6	44371709	44371709	C	G	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	missense	c.703	p.L235V	0.980	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	26	0	0	26	6	18.75	-	-	-	G	44371709	C	G	44371709	3	3	30	1	0	0	0	0	1	0	0	0	3111	913	32	2	725	2	CDC5L	6	44371709	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1144371	44371709	126743358	38	1514										
ZP3	0	genome.wustl.edu	37	chr7	76069881	76069881	+	Missense_Mutation	SNP	A	A	G													0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ccattccaggaggcagcctcAtgtcatgagccagtggtcca							TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	7	76069881	76069881	A	G	SNP	ZP3	ENST00000394857	human	ensembl	69_37n	1	known	missense	c.1013	p.H338R	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP3	HGNC	ENSG00000188372	44	0	0	47	8	14.55	-	-	-	G	76069881	A	G	76069881	3	3	30	1	0	0	0	0	1	0	0	0	18310	217	8	5	1039	5	ZP3	7	76069881	Missense_Mutation	SNP	A	TCGA-A2-A0CR-01A-11D-A228-09		76069881	83068782	39	1515	17	2								
ZP3	0	genome.wustl.edu	37	chr7	76069886	76069886	+	Missense_Mutation	SNP	A	A	G													0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ccaggaggcagcctcatgtcAtgagccagtggtccaggtct							TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	7	76069886	76069886	A	G	SNP	ZP3	ENST00000394857	human	ensembl	69_37n	1	known	missense	c.1018	p.M340V	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP3	HGNC	ENSG00000188372	43	0	0	45	10	18.18	-	-	-	G	76069886	A	G	76069886	3	3	30	1	0	0	0	0	1	0	0	0	18310	217	8	5	1044	5	ZP3	7	76069886	Missense_Mutation	SNP	A	TCGA-A2-A0CR-01A-11D-A228-09	5	76069886	83068777	40	1516	17	2								
DYNC1I1	0	genome.wustl.edu	37	chr7	95661999	95661999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	catcccgtgtactgtgtaaaTgttgttgggacccagaatgc	11	9	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	7	95661999	95661999	T	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	missense	c.1188	p.N396K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	67	0	0	81	13	13.83	-	-	-	A	95661999	T	A	95661999	3	1	30	1	0	0	0	0	1	0	0	0	4877	1461	51	5	1230	5	DYNC1I1	7	95661999	Missense_Mutation	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	19592113	95661999	63476664	41	1517										
ZAN	0	genome.wustl.edu	37	chr7	100349614	100349614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctcagaaaaacccaccatccTcacagaaaaacccaccattc	2	17	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	7	100349614	100349614	T	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.1886	p.L629P	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	24	0	0	35	9	20.45	-	-	-	C	100349614	T	C	100349614	3	2	30	1	0	0	0	0	1	0	0	0	17610	1551	54	5	1936	5	ZAN	7	100349614	Missense_Mutation	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	4687615	100349614	58789049	42	1518										
MGAM	0	genome.wustl.edu	37	chr7	141793306	141793306	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tccccggtgcagcactacaaTgtgcacaacctgtacgggtg	11	13	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	7	141793306	141793306	T	C	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.7131	p.N2377	0.140	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	30	0	0	36	4	10	-	-	-	C	141793306	T	C	141793306	2	2	30	1	0	0	0	0	0	0	0	1	9612	1479	51	5		5	MGAM	7	141793306	Silent	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	41443692	141793306	17345357	43	1519										
TNKS	0	genome.wustl.edu	37	chr8	9413850	9413850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttcaccgtcgtcctcttcttCcccgacttcttcctcatctt	3	18	6	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	8	9413850	9413850	C	T	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	missense	c.401	p.S134F	1.000	NULL	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	70	0	0	75	9	10.71	-	-	-	T	9413850	C	T	9413850	3	4	30	1	0	0	0	0	1	0	0	0	16414	855	30	2	403	2	TNKS	8	9413850	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		9413850	136950172	44	1520										
ADAM7	0	genome.wustl.edu	37	chr8	24348333	24348333	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agtgtactaatccttgctgtGatgcacacacatgtgtactg	9	9	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	8	24348333	24348333	G	T	SNP	ADAM7	ENST00000175238	human	ensembl	69_37n	1	known	missense	c.1288	p.D430Y	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	26	0	0	39	9	18.75	-	-	-	T	24348333	G	T	24348333	3	4	30	1	0	0	0	0	1	0	0	0	251	1290	45	2	1338	2	ADAM7	8	24348333	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	14934483	24348333	122015689	45	1521										
SLCO5A1	0	genome.wustl.edu	37	chr8	70588895	70588895	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cagtgcaaaaggtctctcctCatcttctacggacctacagt	7	13	4	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	8	70588895	70588895	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.2038	p.E680K	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	40	0	0	19	5	20.83	-	-	-	T	70588895	C	T	70588895	3	4	30	1	0	0	0	0	1	0	0	0	14820	835	29	2	516	2	SLCO5A1	8	70588895	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	46240562	70588895	75775127	46	1522										
COL22A1	0	genome.wustl.edu	37	chr8	139712383	139712383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtggatgtggtgtgaacaggGatgtctgaaaaggaaaccac	15	5	1	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	8	139712383	139712383	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.2564	p.S855F	0.902	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	22	0	0	27	8	22.86	-	-	-	A	139712383	G	A	139712383	3	1	30	1	0	0	0	0	1	0	0	0	3711	1174	41	2	2452	2	COL22A1	8	139712383	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	69123488	139712383	6651639	47	1523										
SHARPIN	0	genome.wustl.edu	37	chr8	145154965	145154965	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aaggctggtggtgagttgctCttgctgcctagaggtaagat	15	6	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	8	145154965	145154965	C	G	SNP	SHARPIN	ENST00000398712	human	ensembl	69_37n	-1	known	missense	c.384	p.K128N	0.012	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	42	0	0	45	9	16.67	-	-	-	G	145154965	C	G	145154965	3	3	30	1	0	0	0	0	1	0	0	0	14356	912	32	2	803	2	SHARPIN	8	145154965	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	5442582	145154965	1209057	48	1524										
SMARCA2	0	genome.wustl.edu	37	chr9	2039815	2039815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cagcagcagcagcagcagcaGcaacagcagccgcagcagca	12	15	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	9	2039815	2039815	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	silent	c.705	p.Q235	0.004	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	26	0	0	22	5	18.52	-	-	-	A	2039815	G	A	2039815	2	1	30	1	0	0	0	0	0	0	0	1	14858	962	34	4		4	SMARCA2	9	2039815	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		2039815	139173616	49	1525										
PCSK5	0	genome.wustl.edu	37	chr9	78973680	78973680	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttgaagaggatcaggtgattGagtacagggatcgggactat	15	4	1	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	9	78973680	78973680	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.5425	p.E1809Q	1.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	39	0	0	37	10	21.28	-	-	-	C	78973680	G	C	78973680	3	2	30	1	0	0	0	0	1	0	0	0	11676	1305	45	2		2	PCSK5	9	78973680	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	76933865	78973680	62239751	50	1526										
C9orf84	0	genome.wustl.edu	37	chr9	114454565	114454565	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cttttagttccataatggaaGagttgtcattcaaaatggtg	9	5	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	9	114454565	114454565	G	A	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.3500	p.S1167F	0.003	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	31	0	0	20	6	23.08	-	-	-	A	114454565	G	A	114454565	3	1	30	1	0	0	0	0	1	0	0	0	2525	942	33	2	842	2	C9orf84	9	114454565	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	35480885	114454565	26758866	51	1527										
LCN2	0	genome.wustl.edu	37	chr9	130912858	130912858	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggggatggacatgcacagtcGttagaaaacaagacggagag	15	6	0	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	9	130912858	130912858	G	A	SNP	LCN2	ENST00000487719	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LCN2	HGNC	ENSG00000148346	26	0	0	25	5	16.67	-	-	-	A	130912858	G	A	130912858	1	1	30	0	1	0	0	0	0	0	0	0	8738	1160	40	1		1	LCN2	9	130912858	RNA	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	16458293	130912858	10300573	52	1528										
MTPAP	0	genome.wustl.edu	37	chr10	30653864	30653864	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctcacacccaccccacccccAcccccacagaggtgctgcaa	5	23	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	10	30653864	30653864	A	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	0.011	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	50	0	0	22	25	52.08	-	-	-	C	30653864	A	C	30653864	2	2	30	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653864	Silent	SNP	A	TCGA-A2-A0CR-01A-11D-A228-09		30653864	104880883	53	1529										
EPC1	0	genome.wustl.edu	37	chr10	32561961	32561961	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cctgtagtgttctttctaaaCcctgtatattcaggcgaaag	8	9	3	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	10	32561961	32561961	C	A	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.1913	p.G638V	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	62	0	0	69	9	11.54	-	-	-	A	32561961	C	A	32561961	3	1	30	1	0	0	0	0	1	0	0	0	5197	507	18	4	613	4	EPC1	10	32561961	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1908097	32561961	102972786	54	1530										
FAM21C	0	genome.wustl.edu	37	chr10	46238914	46238914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	acaagaagatgtaggtcttgGagagctgtccagtgaaggta	14	5	1	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	10	46238914	46238914	G	A	SNP	FAM21C	ENST00000374362	human	ensembl	69_37n	1	known	missense	c.605	p.G202E	1.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661	205	0	0	233	31	11.74	-	-	-	A	46238914	G	A	46238914	3	1	30	1	0	0	0	0	1	0	0	0	5584	1174	41	2	627	2	FAM21C	10	46238914	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	13676953	46238914	89295833	55	1531										
EIF3A	0	genome.wustl.edu	37	chr10	120810767	120810767	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tacgaataaatctctgtcttCaagcattcgtgacattcgat	6	9	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	10	120810767	120810767	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.2263	p.E755K	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	29	0	0	32	4	11.11	-	-	-	T	120810767	C	T	120810767	3	4	30	1	0	0	0	0	1	0	0	0	5047	835	29	2	1917	2	EIF3A	10	120810767	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	74571853	120810767	14723980	56	1532										
OR52E4	0	genome.wustl.edu	37	chr11	5906158	5906158	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tcttatattattgtggatgtGatcttaattgcctcttccta	6	7	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	5906158	5906158	G	C	SNP	OR52E4	ENST00000316987	human	ensembl	69_37n	1	known	silent	c.636	p.V212	0.016	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52E4	HGNC	ENSG00000180974	54	0	0	67	8	10.67	-	-	-	C	5906158	G	C	5906158	2	2	30	1	0	0	0	0	0	0	0	1	11189	1277	45	2		2	OR52E4	11	5906158	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		5906158	129100358	57	1533										
TCP11L1	0	genome.wustl.edu	37	chr11	33102667	33102667	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gcttttataaacaggaaaaaGatggatatcttttggcaatt	8	4	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	33102667	33102667	G	C	SNP	TCP11L1	ENST00000527661	human	ensembl	69_37n	1	known	missense	c.1514	p.R505T	0.000	NULL	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148	47	0	0	40	8	16.67	-	-	-	C	33102667	G	C	33102667	3	2	30	1	0	0	0	0	1	0	0	0	15809	957	33	2		2	TCP11L1	11	33102667	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	27196509	33102667	101903849	58	1534										
CELF1	0	genome.wustl.edu	37	chr11	47494730	47494730	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aaacatctgcagcaggtcctGatcaccaaactcctggggca	9	13	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	47494730	47494730	G	A	SNP	CELF1	ENST00000532048	human	ensembl	69_37n	-1	known	nonsense	c.1321	p.Q441*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187	36	0	0	28	6	17.65	-	-	-	A	47494730	G	A	47494730	4	1	30	1	0	0	0	0	0	1	0	0	3244	1299	45	2	225	2	CELF1	11	47494730	Nonsense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	14392063	47494730	87511786	59	1535										
OR1S2	0	genome.wustl.edu	37	chr11	57971579	57971579	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttggagagtcccaggagaatGaattcagtgatggtggtttg	15	4	1	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	57971579	57971579	G	A	SNP	OR1S2	ENST00000302592	human	ensembl	69_37n	-1	known	silent	c.75	p.F25	0.996	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	77	0	0	72	9	11.11	-	-	-	A	57971579	G	A	57971579	2	1	30	1	0	0	0	0	0	0	0	1	11046	1281	45	2		2	OR1S2	11	57971579	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	10476849	57971579	77034937	60	1536										
GANAB	0	genome.wustl.edu	37	chr11	62406907	62406907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agtccagcaaggctcggtatGgagagaggcctggccgtatg	16	9	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	62406907	62406907	G	A	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.176	p.P59L	0.998	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	28	0	0	30	7	18.92	-	-	-	A	62406907	G	A	62406907	3	1	30	1	0	0	0	0	1	0	0	0	6283	1348	47	4	2816	4	GANAB	11	62406907	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	4435328	62406907	72599609	61	1537										
CHKA	0	genome.wustl.edu	37	chr11	67821388	67821388	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggagcagtagtcgaagcacaGaggggaccccgctctgctgc	15	12	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	67821388	67821388	G	A	SNP	CHKA	ENST00000533728	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.018	-	-	-	no_errors	CHKA	HGNC	ENSG00000110721	25	0	0	23	5	17.86	-	-	-	A	67821388	G	A	67821388	1	1	30	0	1	0	0	0	0	0	0	0	3376	957	33	2		2	CHKA	11	67821388	RNA	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	5414481	67821388	67185128	62	1538										
C11orf54	0	genome.wustl.edu	37	chr11	93493023	93493023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agtttttgtctccagagaccCagtaagtctgtgtctgtttt	9	8	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	11	93493023	93493023	C	G	SNP	C11orf54	ENST00000331239	human	ensembl	69_37n	1	known	missense	c.773	p.P258R	1.000	pfam_DUF1907	pfam_DUF1907	-	no_errors	C11orf54	HGNC	ENSG00000182919	68	0	0	61	11	15.28	-	-	-	G	93493023	C	G	93493023	3	3	30	1	0	0	0	0	1	0	0	0	1660	608	21	4	645	4	C11orf54	11	93493023	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	25671635	93493023	41513493	63	1539										
CHD4	0	genome.wustl.edu	37	chr12	6701124	6701124	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tatggatggttgcagcacttCttaagatccatcaccacatt	7	10	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	6701124	6701124	C	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.3048	p.K1016N	1.000	pfam_SNF2_N,pfam_HDA_complex_subunit-2/3	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	18	0	0	21	12	36.36	-	-	-	G	6701124	C	G	6701124	3	3	30	1	0	0	0	0	1	0	0	0	3356	912	32	2	2774	2	CHD4	12	6701124	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		6701124	127150771	64	1540										
CLEC7A	0	genome.wustl.edu	37	chr12	10277955	10277955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cagttgccagcattgtctttTacttccatcccaggaattta	6	11	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	10277955	10277955	T	G	SNP	CLEC7A	ENST00000304084	human	ensembl	69_37n	-1	known	missense	c.433	p.K145Q	0.212	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC7A	HGNC	ENSG00000172243	22	0	0	30	7	18.92	-	-	-	G	10277955	T	G	10277955	3	3	30	1	0	0	0	0	1	0	0	0	3551	1763	61	5	322	5	CLEC7A	12	10277955	Missense_Mutation	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09	3576831	10277955	123573940	65	1541										
KRT83	0	genome.wustl.edu	37	chr12	52710344	52710344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggtgcggcgcagggtctcccCgtgcctgatcactgtggcct	15	14	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	52710344	52710344	C	T	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	missense	c.949	p.G317R	0.987	pfam_F,superfamily_Prefoldin,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	69	0	0	71	10	12.35	-	-	-	T	52710344	C	T	52710344	3	4	30	1	0	0	0	0	1	0	0	0	8550	652	23	1	548	1	KRT83	12	52710344	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	42432389	52710344	81141551	66	1542										
SMUG1	0	genome.wustl.edu	37	chr12	54576104	54576104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctgcacctgccggcagagggCtgcatcacagatcccaagaa	11	14	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	54576104	54576104	C	T	SNP	SMUG1	ENST00000337581	human	ensembl	69_37n	-1	known	missense	c.589	p.A197T	0.992	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like	-	no_errors	SMUG1	HGNC	ENSG00000123415	27	0	0	32	8	20	-	-	-	T	54576104	C	T	54576104	3	4	30	1	0	0	0	0	1	0	0	0	14907	797	28	4	227	4	SMUG1	12	54576104	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1865760	54576104	79275791	67	1543										
DNAJC14	0	genome.wustl.edu	37	chr12	56221820	56221820	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gatccctacgtccaccctccCgagtatcctccttcgttgga	7	17	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	56221820	56221820	C	A	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	missense	c.623	p.R208L	0.985	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	26	0	0	30	6	16.67	-	-	-	A	56221820	C	A	56221820	3	1	30	1	0	0	0	0	1	0	0	0	4668	652	23	3	1509	3	DNAJC14	12	56221820	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1645716	56221820	77630075	68	1544										
PPFIA2	0	genome.wustl.edu	37	chr12	81762938	81762938	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agttgaccctctaaatgtctCatacgttcttcaatatttcc	4	11	4	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	81762938	81762938	C	G	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.1302	p.M434I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	36	0	0	47	6	11.32	-	-	-	G	81762938	C	G	81762938	3	3	30	1	0	0	0	0	1	0	0	0	12383	826	29	2	2555	2	PPFIA2	12	81762938	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	25541118	81762938	52088957	69	1545										
APAF1	0	genome.wustl.edu	37	chr12	99059461	99059461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tcttcgtcttatgattatgaGgctctagatgaagccatgtc	9	8	3	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	99059461	99059461	G	T	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.1086	p.E362D	0.971	pfam_NB-ARC,pirsf_Apoptotic_pept-activating_1	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	24	0	0	18	3	14.29	-	-	-	T	99059461	G	T	99059461	3	4	30	1	0	0	0	0	1	0	0	0	756	991	35	4	1112	4	APAF1	12	99059461	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	17296523	99059461	34792434	70	1546										
ANO4	0	genome.wustl.edu	37	chr12	101433799	101433799	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	accaccgacatctactctatGagtgctgggcctcctggggc	11	14	2	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	12	101433799	101433799	G	C	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.964	p.E322Q	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	35	0	0	25	3	10.71	-	-	-	C	101433799	G	C	101433799	3	2	30	1	0	0	0	0	1	0	0	0	698	1291	45	2	893	2	ANO4	12	101433799	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	2374338	101433799	32418096	71	1547										
ZMYM5	0	genome.wustl.edu	37	chr13	20425884	20425884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aatcgttggttttgtttttaGttccaggaagtccccattcg	9	8	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	13	20425884	20425884	G	A	SNP	ZMYM5	ENST00000337963	human	ensembl	69_37n	-1	known	missense	c.437	p.T146I	0.913	NULL	pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM5	HGNC	ENSG00000132950	64	0	0	62	7	10.14	-	-	-	A	20425884	G	A	20425884	3	1	30	1	0	0	0	0	1	0	0	0	17799	1029	36	4	1707	4	ZMYM5	13	20425884	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		20425884	94743994	72	1548										
ATP7B	0	genome.wustl.edu	37	chr13	52536020	52536020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tgatgagcgttggggtttctCtgggccagggaagcatgaaa	16	6	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	13	52536020	52536020	C	G	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	missense	c.1899	p.Q633H	1.000	superfamily_HeavyMe-assoc_HMA	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	82	0	0	76	9	10.59	-	-	-	G	52536020	C	G	52536020	3	3	30	1	0	0	0	0	1	0	0	0	1195	912	32	2	2562	2	ATP7B	13	52536020	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	32110136	52536020	62633858	73	1549										
YLPM1	0	genome.wustl.edu	37	chr14	75265799	75265799	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggcgaggcccttggtgggatGattgggagagagaccaggat	19	6	0	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	14	75265799	75265799	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.3799	p.D1267N	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	45	0	0	31	9	22.5	-	-	-	A	75265799	G	A	75265799	3	1	30	1	0	0	0	0	1	0	0	0	17583	1290	45	2	3817	2	YLPM1	14	75265799	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		75265799	32083741	74	1550			2	3		3	3	325	G		6.722299e-07
YLPM1	0	genome.wustl.edu	37	chr14	75266090	75266090	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gagagcatgggtatgatcgaGatttccgtgataggggtgag	17	4	0	5			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	14	75266090	75266090	G	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.4090	p.D1364H	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	29	0	0	31	8	20.51	-	-	-	C	75266090	G	C	75266090	3	2	30	1	0	0	0	0	1	0	0	0	17583	942	33	2	4108	2	YLPM1	14	75266090	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	291	75266090	32083450	75	1551			2	3		3	3	325	G		6.722299e-07
YLPM1	0	genome.wustl.edu	37	chr14	75266123	75266123	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggggtgagttgaggattcgaGagtatccagaaagaggagat	17	3	0	6			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	14	75266123	75266123	G	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.4123	p.E1375Q	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	29	0	0	31	5	13.89	-	-	-	C	75266123	G	C	75266123	3	2	30	1	0	0	0	0	1	0	0	0	17583	943	33	2	4141	2	YLPM1	14	75266123	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	33	75266123	32083417	76	1552			2	3		3	3	325	G		6.722299e-07
RTL1	0	genome.wustl.edu	37	chr14	101348427	101348427	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agtagaaagcgcagcaggctCtcttgccggtttggtcgtcg	14	10	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	14	101348427	101348427	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2699	p.R900K	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	22	0	0	53	9	14.52	-	-	-	T	101348427	C	T	101348427	3	4	30	1	0	0	0	0	1	0	0	0	13810	913	32	2	1381	2	RTL1	14	101348427	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	26082304	101348427	6001113	77	1553										
CDC42BPB	0	genome.wustl.edu	37	chr14	103405981	103405981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tgagcacctgcatgccgtcgCctgggcccatgtgggccacg	14	15	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	14	103405981	103405981	C	G	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.4793	p.G1598A	1.000	smart_PAK_box_Rho-bd	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	55	0	0	60	13	17.81	-	-	-	G	103405981	C	G	103405981	3	3	30	1	0	0	0	0	1	0	0	0	3102	739	26	4	358	4	CDC42BPB	14	103405981	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	2057554	103405981	3943559	78	1554										
PEX11A	0	genome.wustl.edu	37	chr15	90233925	90233925	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtgggtcctctggggcccgtCggatccccagggaacggtca	16	13	2	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	15	90233925	90233925	C	G	SNP	PEX11A	ENST00000557982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PEX11A	HGNC	ENSG00000166821	36	0	0	48	6	11.11	-	-	-	G	90233925	C	G	90233925	1	3	30	0	1	0	0	0	0	0	0	0	11811	899	31	3		3	PEX11A	15	90233925	RNA	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		90233925	12297467	79	1555										
ZNF710	0	genome.wustl.edu	37	chr15	90611126	90611126	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tcgtgtggcaggaggccagtGagttcgaggctgacacggcg	18	9	0	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	15	90611126	90611126	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	0.706	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	25	0	0	54	8	12.9	-	-	-	A	90611126	G	A	90611126	3	1	30	1	0	0	0	0	1	0	0	0	18211	1291	45	2	759	2	ZNF710	15	90611126	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	377201	90611126	11920266	80	1556			3	4		2	2	13	G		4.302689e-05
ZNF710	0	genome.wustl.edu	37	chr15	90611138	90611138	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aggccagtgagttcgaggctGacacggcgggttcgaccgtg	17	10	0	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	15	90611138	90611138	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	missense	c.769	p.D257N	0.269	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	27	0	0	54	9	14.29	-	-	-	A	90611138	G	A	90611138	3	1	30	1	0	0	0	0	1	0	0	0	18211	1290	45	2	771	2	ZNF710	15	90611138	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	12	90611138	11920254	81	1557			3	4		2	2	13	G		4.302689e-05
UNC45A	0	genome.wustl.edu	37	chr15	91491411	91491411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atcgacgcaggcactcggcgCtgggcagtggagggcctggc	18	12	0	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	15	91491411	91491411	C	T	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	1	known	silent	c.1635	p.R545	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	32	0	0	35	7	16.67	-	-	-	T	91491411	C	T	91491411	2	4	30	1	0	0	0	0	0	0	0	1	17085	784	28	4		4	UNC45A	15	91491411	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	880273	91491411	11039981	82	1558										
PRC1	0	genome.wustl.edu	37	chr15	91524812	91524812	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttcacacaccacatctctttCaaagcttgtgtctggggtgt	8	11	4	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	15	91524812	91524812	C	T	SNP	PRC1	ENST00000394249	human	ensembl	69_37n	-1	known	missense	c.589	p.E197K	1.000	pfam_Microtubule-assoc_MAP65_ASE1	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	PRC1	HGNC	ENSG00000198901	53	0	0	53	6	10.17	-	-	-	T	91524812	C	T	91524812	3	4	30	1	0	0	0	0	1	0	0	0	12527	835	29	2	1317	2	PRC1	15	91524812	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	33401	91524812	11006580	83	1559										
ABCA3	0	genome.wustl.edu	37	chr16	2349496	2349496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	acaggttgaggttcaggtctCtgacggccgccctgtcctta	12	12	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	16	2349496	2349496	C	G	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.1649	p.R550T	0.022	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	33	0	0	54	9	14.29	-	-	-	G	2349496	C	G	2349496	3	3	30	1	0	0	0	0	1	0	0	0	33	913	32	2	3545	2	ABCA3	16	2349496	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09		2349496	88005257	84	1560										
THAP11	0	genome.wustl.edu	37	chr16	67876823	67876824	+	In_Frame_Ins	INS	-	-	CAG													0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aacagcagcagcagcagcaaINScagcagcagcagcagcagca							TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	16	67876823	67876824	-	CAG	INS	THAP11	ENST00000303596	human	ensembl	69_37n	1	known	in_frame_ins	c.366_367	p.126in_frame_insQ	0.001:0.009	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP11	HGNC	ENSG00000168286	16	0	0	18	8	30.77	-	-	-	CAG	67876824	-	CAG	67876823	7	5	30	1	0	1	1	0	0	0	0	0	15938	40	2	0	368	0	THAP11	16	67876823	In_Frame_Ins	INS	-	TCGA-A2-A0CR-01A-11D-A228-09	65527327	67876823	22477930	85	1561										
CDH1	0	genome.wustl.edu	37	chr16	68835596	68835596	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	attttgaagattgcaccggtCgacaaaggacagcctatttt	9	8	0	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	16	68835596	68835596	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.187	p.R63*	0.175	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	31	0	0	43	6	12.24	-	-	-	T	68835596	C	T	68835596	4	4	30	1	0	0	0	0	0	1	0	0	3124	876	31	1	197	1	CDH1	16	68835596	Nonsense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	958773	68835596	21519157	86	1562										
MYH2	0	genome.wustl.edu	37	chr17	10450932	10450932	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctgatcatccttcactgtcaGagtctggtaaacaggaaaga	9	9	4	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	10450932	10450932	G	A	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.208	p.L70	0.025	pfam_Myosin_N	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	62	0	0	42	6	12.5	-	-	-	A	10450932	G	A	10450932	2	1	30	1	0	0	0	0	0	0	0	1	10107	933	33	2		2	MYH2	17	10450932	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		10450932	70744278	87	1563										
SSH2	0	genome.wustl.edu	37	chr17	28088351	28088351	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cctctgctctgctccggcacGaggcgcaggctgcgcgtgca	14	16	2	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	28088351	28088351	G	A	SNP	SSH2	ENST00000580327	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSH2	HGNC	ENSG00000141298	24	0	0	17	6	26.09	-	-	-	A	28088351	G	A	28088351	1	1	30	0	1	0	0	0	0	0	0	0	15276	1073	37	1		1	SSH2	17	28088351	RNA	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	17637419	28088351	53106859	88	1564										
CRLF3	0	genome.wustl.edu	37	chr17	29130962	29130962	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtgttgactccgtgttctatGagcttctggcagtcatctag	11	9	4	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	29130962	29130962	G	C	SNP	CRLF3	ENST00000324238	human	ensembl	69_37n	-1	known	silent	c.294	p.L98	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF3	HGNC	ENSG00000176390	70	0	0	64	10	13.51	-	-	-	C	29130962	G	C	29130962	2	2	30	1	0	0	0	0	0	0	0	1	3918	1277	45	2		2	CRLF3	17	29130962	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	1042611	29130962	52064248	89	1565										
NF1	0	genome.wustl.edu	37	chr17	29528088	29528088	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atccaagtaagccattctcaAgaggcagtcagcctgcagat	9	11	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	29528088	29528088	A	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.1096	p.R366*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	63	0	0	44	5	10.2	-	-	-	T	29528088	A	T	29528088	4	4	30	1	0	0	0	0	0	1	0	0	10428	64	3	5	1134	5	NF1	17	29528088	Nonsense_Mutation	SNP	A	TCGA-A2-A0CR-01A-11D-A228-09	397126	29528088	51667122	90	1566										
MED24	0	genome.wustl.edu	37	chr17	38189363	38189363	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agggactgcgtctcgcctgtCaggttcatggtgccctcgag	14	12	3	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	38189363	38189363	C	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	silent	c.768	p.L256	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	25	0	0	35	10	22.22	-	-	-	T	38189363	C	T	38189363	2	4	30	1	0	0	0	0	0	0	0	1	9513	813	29	2		2	MED24	17	38189363	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	8661275	38189363	43005847	91	1567										
SPOP	0	genome.wustl.edu	37	chr17	47696471	47696471	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cctatatgcccgttgactctCtggggtggggaaaaaaaaag	12	8	1	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	47696471	47696471	C	T	SNP	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	splice_site	c.353-1	e4-1	1.000	-	-	-	no_errors	SPOP	HGNC	ENSG00000121067	25	0	0	16	4	20	-	-	-	T	47696471	C	T	47696471	5	4	30	1	0	0	0	0	0	0	1	0	15175	927	32	2	796	2	SPOP	17	47696471	Splice_Site	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	9507108	47696471	33498739	92	1568										
MAP3K3	0	genome.wustl.edu	37	chr17	61771096	61771096	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctcgccagagaccttcagctGaggagctgctcacacaccac	9	16	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	61771096	61771096	G	C	SNP	MAP3K3	ENST00000361357	human	ensembl	69_37n	1	known	missense	c.1933	p.E645Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909	63	0	0	55	12	17.91	-	-	-	C	61771096	G	C	61771096	3	2	30	1	0	0	0	0	1	0	0	0	9322	1291	45	2	1999	2	MAP3K3	17	61771096	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	14074625	61771096	19424114	93	1569										
CD300LF	0	genome.wustl.edu	37	chr17	72700705	72700705	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtgtcagcatcagttttcatGagatcctccatggtcacagt	9	10	4	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	72700705	72700705	G	C	SNP	CD300LF	ENST00000326165	human	ensembl	69_37n	-1	known	silent	c.294	p.L98	0.550	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LF	HGNC	ENSG00000186074	74	0	0	80	14	14.89	-	-	-	C	72700705	G	C	72700705	2	2	30	1	0	0	0	0	0	0	0	1	3030	1277	45	2		2	CD300LF	17	72700705	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	10929609	72700705	8494505	94	1570										
NUP85	0	genome.wustl.edu	37	chr17	73204681	73204681	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tttgactggggtccaggggaGatgctggtatgtgaaacctc	15	7	0	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	17	73204681	73204681	G	A	SNP	NUP85	ENST00000245544	human	ensembl	69_37n	1	known	silent	c.93	p.E31	1.000	NULL	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450	55	0	0	46	8	14.81	-	-	-	A	73204681	G	A	73204681	2	1	30	1	0	0	0	0	0	0	0	1	10843	933	33	2		2	NUP85	17	73204681	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	503976	73204681	7990529	95	1571										
MUC16	0	genome.wustl.edu	37	chr19	9059907	9059907	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctgtggtcttcaccagccctGaggtgagaagtgatgtcaca	12	10	3	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	9059907	9059907	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.27539	p.S9180L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	46	0	0	45	8	15.09	-	-	-	A	9059907	G	A	9059907	3	1	30	1	0	0	0	0	1	0	0	0	10045	1294	45	2	16312	2	MUC16	19	9059907	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		9059907	50069076	96	1572										
ICAM1	0	genome.wustl.edu	37	chr19	10394723	10394723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ccctagtcctgccagcgactCccccacaacttgtcagcccc	6	21	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	10394723	10394723	C	T	SNP	ICAM1	ENST00000264832	human	ensembl	69_37n	1	known	missense	c.652	p.P218S	0.000	NULL	pfam_ICAM_N,smart_Ig_sub,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM1	HGNC	ENSG00000090339	34	0	0	38	8	17.39	-	-	-	T	10394723	C	T	10394723	3	4	30	1	0	0	0	0	1	0	0	0	7533	855	30	2	666	2	ICAM1	19	10394723	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1334816	10394723	48734260	97	1573										
ZNF653	0	genome.wustl.edu	37	chr19	11597838	11597838	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ggatttcatagatgatggctGacatgtcgctgccgtccagc	12	10	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	11597838	11597838	G	A	SNP	ZNF653	ENST00000293771	human	ensembl	69_37n	-1	known	missense	c.1307	p.S436L	0.988	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914	44	0	0	51	6	10.53	-	-	-	A	11597838	G	A	11597838	3	1	30	1	0	0	0	0	1	0	0	0	18162	1294	45	2	560	2	ZNF653	19	11597838	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	1203115	11597838	47531145	98	1574										
EMR2	0	genome.wustl.edu	37	chr19	14875317	14875317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	caggcctctgaggacatcctCtaggccatccagcaggtgac	11	14	2	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	14875317	14875317	C	T	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.1012	p.E338K	0.355	prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	34	0	0	42	6	12.5	-	-	-	T	14875317	C	T	14875317	3	4	30	1	0	0	0	0	1	0	0	0	5142	922	32	2	1503	2	EMR2	19	14875317	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	3277479	14875317	44253666	99	1575										
RASAL3	0	genome.wustl.edu	37	chr19	15563552	15563552	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	aaggcccggatttgggtgctCagcgactccacgaggcggga	16	11	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	15563552	15563552	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	silent	c.2745	p.L915	0.248	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	31	0	0	48	13	21.31	-	-	-	T	15563552	C	T	15563552	2	4	30	1	0	0	0	0	0	0	0	1	13148	813	29	2		2	RASAL3	19	15563552	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	688235	15563552	43565431	100	1576										
C19orf44	0	genome.wustl.edu	37	chr19	16620688	16620688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	caagtgtgaagacagaccttCcacaaacagccgagtctagg	10	11	1	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	16620688	16620688	C	T	SNP	C19orf44	ENST00000221671	human	ensembl	69_37n	1	known	missense	c.1528	p.P510S	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072	33	0	0	38	7	15.56	-	-	-	T	16620688	C	T	16620688	3	4	30	1	0	0	0	0	1	0	0	0	1945	855	30	2	1542	2	C19orf44	19	16620688	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	1057136	16620688	42508295	101	1577										
SYMPK	0	genome.wustl.edu	37	chr19	46347318	46347318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ttcataggcctggatcacctCagacatgaacatgggtctct	9	11	4	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	46347318	46347318	C	T	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.817	p.E273K	0.998	pfam_DUF3453,superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	48	0	0	43	8	15.69	-	-	-	T	46347318	C	T	46347318	3	4	30	1	0	0	0	0	1	0	0	0	15531	835	29	2	3087	2	SYMPK	19	46347318	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	29726630	46347318	12781665	102	1578										
ACPT	0	genome.wustl.edu	37	chr19	51297066	51297066	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gcagcagagaaggcccagctGacagggggtgaggtgtgggt	20	7	0	3			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	51297066	51297066	G	C	SNP	ACPT	ENST00000270593	human	ensembl	69_37n	1	known	silent	c.771	p.L257	0.997	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPT	HGNC	ENSG00000142513	32	0	0	56	11	16.42	-	-	-	C	51297066	G	C	51297066	2	2	30	1	0	0	0	0	0	0	0	1	168	1277	45	2		2	ACPT	19	51297066	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	4949748	51297066	7831917	103	1579										
TRIM28	0	genome.wustl.edu	37	chr19	59057200	59057200	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agtgctcggagcctctgtgtGagacctgtgtagaggcgcac	15	10	1	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	19	59057200	59057200	G	A	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	missense	c.523	p.E175K	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	59	0	0	81	19	19	-	-	-	A	59057200	G	A	59057200	3	1	30	1	0	0	0	0	1	0	0	0	16598	1291	45	2	533	2	TRIM28	19	59057200	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	7760134	59057200	71783	104	1580										
ZNF334	0	genome.wustl.edu	37	chr20	45130711	45130711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tcctgtatgacttcttcgatGcacattgagggcagattgac	10	9	1	4			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	20	45130711	45130711	G	T	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.1267	p.H423N	0.972	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	30	0	0	32	4	11.11	-	-	-	T	45130711	G	T	45130711	3	4	30	1	0	0	0	0	1	0	0	0	17947	1319	46	4	779	4	ZNF334	20	45130711	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		45130711	17894809	105	1581										
COL6A1	0	genome.wustl.edu	37	chr21	47412129	47412129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	agaaaggagaggcgggcgacGaggtgagtgagggctcctga	20	6	0	5			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	21	47412129	47412129	G	C	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	1	known	missense	c.1234	p.E412Q	1.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	43	0	0	71	8	10.13	-	-	-	C	47412129	G	C	47412129	3	2	30	1	0	0	0	0	1	0	0	0	3729	1059	37	3	1300	3	COL6A1	21	47412129	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		47412129	717766	106	1582										
GAL3ST1	0	genome.wustl.edu	37	chr22	30951295	30951295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	cgttgaagtggcggtagaggTgggagtccagcatgttccag	17	7	0	2			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	22	30951295	30951295	T	G	SNP	GAL3ST1	ENST00000338911	human	ensembl	69_37n	-1	known	missense	c.917	p.H306P	0.539	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242	78	0	0	29	16	35.56	-	-	-	G	30951295	T	G	30951295	3	3	30	1	0	0	0	0	1	0	0	0	6247	1696	59	5	358	5	GAL3ST1	22	30951295	Missense_Mutation	SNP	T	TCGA-A2-A0CR-01A-11D-A228-09		30951295	20353271	107	1583										
KIAA1644	0	genome.wustl.edu	37	chr22	44681447	44681447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctgacccggccgaggggcccGagcggggttcccccaccgcc	15	19	0	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	22	44681447	44681447	G	A	SNP	KIAA1644	ENST00000381176	human	ensembl	69_37n	-1	putative	missense	c.460	p.R154W	0.998	NULL	NULL	-	no_errors	KIAA1644	HGNC	ENSG00000138944	30	0	0	25	5	16.67	-	-	-	A	44681447	G	A	44681447	3	1	30	1	0	0	0	0	1	0	0	0	8302	1057	37	1	147	1	KIAA1644	22	44681447	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	13730152	44681447	6623119	108	1584										
TFE3	0	genome.wustl.edu	37	chrX	48887846	48887846	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	atgtcctccagccccaggtgGaaggggtctcccaggtcccc	12	16	1	0			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	X	48887846	48887846	G	A	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	silent	c.1551	p.F517	0.993	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	35	0	0	51	9	15	-	-	-	A	48887846	G	A	48887846	2	1	30	1	0	0	0	0	0	0	0	1	15895	1165	41	2		2	TFE3	23	48887846	Silent	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09		48887846	106382714	109	1585										
ATP7A	0	genome.wustl.edu	37	chrX	77245317	77245317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	gtctattgagggtgtcatatCaaaaaagccaggtgtaaaat	10	5	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	X	77245317	77245317	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.1199	p.S400L	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	37	0	0	31	9	22.5	-	-	-	T	77245317	C	T	77245317	3	4	30	1	0	0	0	0	1	0	0	0	1194	838	29	2	1209	2	ATP7A	23	77245317	Missense_Mutation	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	28357471	77245317	78025243	110	1586										
SRPX2	0	genome.wustl.edu	37	chrX	99921786	99921786	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	ctctgaaacctccgcagcacGgctacctcacctgcacctca	6	19	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	X	99921786	99921786	G	T	SNP	SRPX2	ENST00000373004	human	ensembl	69_37n	1	known	missense	c.817	p.G273C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359	37	0	0	32	6	15.79	-	-	-	T	99921786	G	T	99921786	3	4	30	1	0	0	0	0	1	0	0	0	15256	1116	39	3	843	3	SRPX2	23	99921786	Missense_Mutation	SNP	G	TCGA-A2-A0CR-01A-11D-A228-09	22676469	99921786	55348774	111	1587										
GLRA4	0	genome.wustl.edu	37	chrX	102962273	102962273	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.594594594594595	66	1.13411796373806e-31	4.90541936695783	5.768895592425	4.39036337281951	0.229635580437077	0.835766845696152	53	tggtgtcaattctcttggctCagtccacgtagagtttccgc	10	11	3	1			TCGA-A2-A0CR-01A-11D-A228-09	TCGA-A2-A0CR-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f573c3c3-7b61-4955-8772-215b7cb9a763	3bdb54b4-1e26-4274-a1bd-800416ffbd34	X	102962273	102962273	C	T	SNP	GLRA4	ENST00000372617	human	ensembl	69_37n	-1	known	silent	c.1253	p.*418	0.995	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828	58	0	0	65	8	10.96	-	-	-	T	102962273	C	T	102962273	2	4	30	1	0	0	0	0	0	0	0	1	6509	840	29	2		2	GLRA4	23	102962273	Silent	SNP	C	TCGA-A2-A0CR-01A-11D-A228-09	3040487	102962273	52308287	112	1588										
VPS13D	0	genome.wustl.edu	37	chr1	12445347	12445347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	tttctgccaccggaaaagcaGccgttcatatgaagtggatg	11	9	2	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	1	12445347	12445347	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.11399	p.S3800N	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	116	0	0	103	36	25.9	-	-	-	A	12445347	G	A	12445347	3	1	31	1	0	0	0	0	1	0	0	0	17289	971	34	4	11629	4	VPS13D	1	12445347	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09		12445347	236805274	1	1589										
GPA33	0	genome.wustl.edu	37	chr1	167024281	167024281	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	cagcagcagtagatgatgatGccaatgataatgagggctgc	13	7	0	5			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	1	167024281	167024281	G	T	SNP	GPA33	ENST00000367868	human	ensembl	69_37n	-1	known	silent	c.759	p.G253	0.003	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	GPA33	HGNC	ENSG00000143167	61	0	0	200	28	12.23	-	-	-	T	167024281	G	T	167024281	2	4	31	1	0	0	0	0	0	0	0	1	6636	1306	46	4		4	GPA33	1	167024281	Silent	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	154578934	167024281	82226340	2	1590										
FMO1	0	genome.wustl.edu	37	chr1	171236862	171236862	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	ttgaccttctgaaacacattCaattcaaggtaagacacaaa	5	9	3	3			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	1	171236862	171236862	C	A	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.313	p.Q105K	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	102	0	0	289	49	14.5	-	-	-	A	171236862	C	A	171236862	3	1	31	1	0	0	0	0	1	0	0	0	6000	827	29	2	319	2	FMO1	1	171236862	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09	4212581	171236862	78013759	3	1591										
BMPR2	0	genome.wustl.edu	37	chr2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	cagggatgacttcctcgctgCagcggccctggcgggtgccc	15	15	0	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	2	203242213	203242213	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	nonsense	c.16	p.Q6*	0.233	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	120	0	0	116	40	25.64	-	-	-	T	203242213	C	T	203242213	4	4	31	1	0	0	0	0	0	1	0	0	1476	711	25	4	18	4	BMPR2	2	203242213	Nonsense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		203242213	39957160	4	1592										
TBL1XR1	0	genome.wustl.edu	37	chr3	176752091	176752091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	cttgcaaatcatggacacaaTtgtcttgtttcatactccat	5	10	3	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	3	176752091	176752091	T	C	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	missense	c.1145	p.N382S	0.987	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	142	0	0	187	41	17.98	-	-	-	C	176752091	T	C	176752091	3	2	31	1	0	0	0	0	1	0	0	0	15735	1493	52	5	415	5	TBL1XR1	3	176752091	Missense_Mutation	SNP	T	TCGA-A2-A0CS-01A-11D-A10Y-09		176752091	21270339	5	1593										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	111	0	0	197	33	14.35	-	-	-	G	178952085	A	G	178952085	3	3	31	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0CS-01A-11D-A10Y-09	2199994	178952085	19070345	6	1594										
ADH7	0	genome.wustl.edu	37	chr4	100341731	100341731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aacttcaaaggtgtatcccaCgttgttgcctgtcatttctg	8	10	3	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	4	100341731	100341731	C	T	SNP	ADH7	ENST00000209665	human	ensembl	69_37n	-1	known	missense	c.820	p.V274M	0.164	pfam_ADH_C	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344	99	0	0	149	34	18.58	-	-	-	T	100341731	C	T	100341731	3	4	31	1	0	0	0	0	1	0	0	0	313	536	19	1	356	1	ADH7	4	100341731	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		100341731	90812545	7	1595										
GPR98	0	genome.wustl.edu	37	chr5	90086905	90086905	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aagagtatcacatggttctcTgtttatgcaaatgatgaccc	8	8	2	3			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	5	90086905	90086905	T	C	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	silent	c.14259	p.S4753	0.993	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	177	0	0	393	77	16.38	-	-	-	C	90086905	T	C	90086905	2	2	31	1	0	0	0	0	0	0	0	1	6772	1567	55	5		5	GPR98	5	90086905	Silent	SNP	T	TCGA-A2-A0CS-01A-11D-A10Y-09		90086905	90828355	8	1596										
MDGA1	0	genome.wustl.edu	37	chr6	37612289	37612290	+	Frame_Shift_Del	DEL	TA	TA	-													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	tcaccctcaggggtgccactTatgtcggtggggggaccagt							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	6	37612289	37612290	TA	-	DEL	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	frame_shift_del	c.2397_2396	p.I799fs	0.998:1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	134	0	0	149	26	14.69	-	-	-	-	37612290	TA	-	37612289	7	5	31	1	0	1	0	1	0	0	0	0	9477	1744	61	0	502	0	MDGA1	6	37612289	Frame_Shift_Del	DEL	TA	TCGA-A2-A0CS-01A-11D-A10Y-09		37612289	133502778	9	1597										
PKHD1	0	genome.wustl.edu	37	chr6	51637584	51637584	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aaagatgaactttcccataaAcccctgaaaataaaaggagt	6	8	0	3			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	6	51637584	51637584	A	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.8558	p.V2853D	1.000	pfam_G8_domain	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	140	1	0.71	116	86	42.36	-	-	-	T	51637584	A	T	51637584	3	4	31	1	0	0	0	0	1	0	0	0	12045	43	2	5	3757	5	PKHD1	6	51637584	Missense_Mutation	SNP	A	TCGA-A2-A0CS-01A-11D-A10Y-09	14025295	51637584	119477483	10	1598										
ZNF292	0	genome.wustl.edu	37	chr6	87865327	87865327	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aagatggcggacgaagaggcCgagcaggagaggttgagttg	19	5	0	4			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	6	87865327	87865327	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	silent	c.18	p.A6	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	27	0	0	27	9	25	-	-	-	T	87865327	C	T	87865327	2	4	31	1	0	0	0	0	0	0	0	1	17922	639	23	1		1	ZNF292	6	87865327	Silent	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09	36227743	87865327	83249740	11	1599										
VNN1	0	genome.wustl.edu	37	chr6	133015262	133015262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	ccccaatatttgccacaacaTagatagagttgttcttggcc	7	11	1	2			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	6	133015262	133015262	T	C	SNP	VNN1	ENST00000367928	human	ensembl	69_37n	-1	known	missense	c.401	p.Y134C	0.995	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299	249	0	0	309	65	17.38	-	-	-	C	133015262	T	C	133015262	3	2	31	1	0	0	0	0	1	0	0	0	17279	1406	49	5	1160	5	VNN1	6	133015262	Missense_Mutation	SNP	T	TCGA-A2-A0CS-01A-11D-A10Y-09	45149935	133015262	38099805	12	1600										
TAS2R16	0	genome.wustl.edu	37	chr7	122635049	122635049	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	tttcatgcttggattgcagtGaccagtgctatgatgttgta	11	6	1	2			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	7	122635049	122635049	G	A	SNP	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	missense	c.640	p.H214Y	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	125	0	0	269	60	18.18	-	-	-	A	122635049	G	A	122635049	3	1	31	1	0	0	0	0	1	0	0	0	15661	1290	45	2	239	2	TAS2R16	7	122635049	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09		122635049	36503614	13	1601										
MLL3	0	genome.wustl.edu	37	chr7	151851131	151851132	+	Frame_Shift_Ins	INS	-	-	A													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gcagagtaattgctacagatINSataagacctgatctgggacc							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	7	151851131	151851132	-	A	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12411_12410	p.S4138fs	0.927:0.999	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	192	0	0	227	95	29.5	-	-	-	A	151851132	-	A	151851131	7	5	31	1	0	1	1	0	0	0	0	0	9693	1396	49	0	2543	0	MLL3	7	151851131	Frame_Shift_Ins	INS	-	TCGA-A2-A0CS-01A-11D-A10Y-09	29216082	151851131	7287532	14	1602										
ZBTB10	0	genome.wustl.edu	37	chr8	81412499	81412499	+	Frame_Shift_Del	DEL	A	A	-													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aggaggaaaaaccaaactacAaaaagatttatttataatat							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	8	81412499	81412499	A	-	DEL	ZBTB10	ENST00000426744	human	ensembl	69_37n	1	known	frame_shift_del	c.1743	p.R583fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189	15	0	0	35	7	16.67	-	-	-	-	81412499	A	-	81412499	7	5	31	1	0	1	0	1	0	0	0	0	17619	117	5	0	1749	0	ZBTB10	8	81412499	Frame_Shift_Del	DEL	A	TCGA-A2-A0CS-01A-11D-A10Y-09		81412499	64951523	15	1603										
EFR3A	0	genome.wustl.edu	37	chr8	132998454	132998454	+	Frame_Shift_Del	DEL	G	G	-													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	tttttaggttattgaaattcGaactatggaagccccttatt							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	8	132998454	132998454	G	-	DEL	EFR3A	ENST00000254624	human	ensembl	69_37n	1	known	frame_shift_del	c.1883	p.R628fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294	198	0	0	114	47	28.14	-	-	-	-	132998454	G	-	132998454	7	5	31	1	0	1	0	1	0	0	0	0	4993	1058	37	0	1949	0	EFR3A	8	132998454	Frame_Shift_Del	DEL	G	TCGA-A2-A0CS-01A-11D-A10Y-09	51585955	132998454	13365568	16	1604										
LINGO2	0	genome.wustl.edu	37	chr9	27949369	27949369	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	caggctgcgggtctccatctGcactgcattctagctggact	11	13	3	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	9	27949369	27949369	G	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.1301	p.A434E	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	116	0	0	296	55	15.67	-	-	-	T	27949369	G	T	27949369	3	4	31	1	0	0	0	0	1	0	0	0	8871	1319	46	4	523	4	LINGO2	9	27949369	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09		27949369	113264062	17	1605										
DIRAS2	0	genome.wustl.edu	37	chr9	93375893	93375893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	ccctttggagatggacagccGctgcatggccgggaactggt	15	11	0	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	9	93375893	93375893	G	A	SNP	DIRAS2	ENST00000375765	human	ensembl	69_37n	-1	known	missense	c.217	p.R73W	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS2	HGNC	ENSG00000165023	89	0	0	185	65	26	-	-	-	A	93375893	G	A	93375893	3	1	31	1	0	0	0	0	1	0	0	0	4567	1086	38	1	386	1	DIRAS2	9	93375893	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	65426524	93375893	47837538	18	1606										
LARP4B	0	genome.wustl.edu	37	chr10	871788	871788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	acgtaaacccatttataaatCcagtatttggaaatggagtt	7	6	0	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	10	871788	871788	C	A	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.1148	p.G383V	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	89	0	0	46	54	54	-	-	-	A	871788	C	A	871788	3	1	31	1	0	0	0	0	1	0	0	0	8685	855	30	2	1096	2	LARP4B	10	871788	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		871788	134662959	19	1607										
PTEN	0	genome.wustl.edu	37	chr10	89693002	89693003	+	Frame_Shift_Ins	INS	-	-	A													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gggaagtaaggaccagagacINSaaaaaggtaagttatttttt							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	10	89693002	89693003	-	A	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.486_487	p.V165fs	1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	70	0	0	56	73	56.59	-	-	-	A	89693003	-	A	89693002	7	5	31	1	0	1	1	0	0	0	0	0	12818	477	17	0	504	0	PTEN	10	89693002	Frame_Shift_Ins	INS	-	TCGA-A2-A0CS-01A-11D-A10Y-09	88821214	89693002	45841745	20	1608										
OR10A2	0	genome.wustl.edu	37	chr11	6891161	6891161	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	cttatctttcctggagattgGcttcaacctagtcattgtgc	8	10	3	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	11	6891161	6891161	G	T	SNP	OR10A2	ENST00000307322	human	ensembl	69_37n	1	known	missense	c.176	p.G59V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790	173	1	0.57	496	97	16.36	-	-	-	T	6891161	G	T	6891161	3	4	31	1	0	0	0	0	1	0	0	0	10963	1203	42	4	178	4	OR10A2	11	6891161	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09		6891161	128115355	21	1609										
OR4S2	0	genome.wustl.edu	37	chr11	55419253	55419253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	atacactgagaaatgcagaaGtaaagaatgcaatgaagaaa	9	4	0	5			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	11	55419253	55419253	G	T	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.874	p.V292L	0.972	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	88	0	0	163	96	37.07	-	-	-	T	55419253	G	T	55419253	3	4	31	1	0	0	0	0	1	0	0	0	11156	1029	36	4	876	4	OR4S2	11	55419253	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	48528092	55419253	79587263	22	1610										
CDKN1B	0	genome.wustl.edu	37	chr12	12871146	12871147	+	Frame_Shift_Ins	INS	-	-	C													0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aattggggctccggctaactINSctgaggacacgcatttggtg							TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	12	12871146	12871147	-	C	INS	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_ins	c.373_374	p.E126fs	0.665:0.670	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	14	0	0	20	15	42.86	-	-	-	C	12871147	-	C	12871146	7	5	31	1	0	1	1	0	0	0	0	0	3188	1551	54	0	375	0	CDKN1B	12	12871146	Frame_Shift_Ins	INS	-	TCGA-A2-A0CS-01A-11D-A10Y-09		12871146	120980749	23	1611										
RAPGEF3	0	genome.wustl.edu	37	chr12	48141337	48141337	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aaagcatcacctgtggcatcGccgcctctctggccactgct	9	16	2	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	12	48141337	48141337	G	A	SNP	RAPGEF3	ENST00000389212	human	ensembl	69_37n	-1	known	nonsense	c.1546	p.R516*	1.000	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF3	HGNC	ENSG00000079337	48	0	0	107	35	22.01	-	-	-	A	48141337	G	A	48141337	4	1	31	1	0	0	0	0	0	1	0	0	13128	1095	38	1	1281	1	RAPGEF3	12	48141337	Nonsense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	35270191	48141337	85710558	24	1612										
GLT1D1	0	genome.wustl.edu	37	chr12	129467539	129467539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gaaaaggaaatcgtagtgaaCggaagggaatacgtgagaat	14	3	0	2			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	12	129467539	129467539	C	T	SNP	GLT1D1	ENST00000442111	human	ensembl	69_37n	1	known	silent	c.945	p.N315	0.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	GLT1D1	HGNC	ENSG00000151948	169	1	0.59	283	53	15.77	-	-	-	T	129467539	C	T	129467539	2	4	31	1	0	0	0	0	0	0	0	1	6517	535	19	1		1	GLT1D1	12	129467539	Silent	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09	81326202	129467539	4384356	25	1613										
ATG2B	0	genome.wustl.edu	37	chr14	96797849	96797849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	aggtgtcaatggattaaggtTctgtgacgtttcaggtggag	15	4	3	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	14	96797849	96797849	T	C	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.1594	p.N532D	0.798	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	90	0	0	158	30	15.96	-	-	-	C	96797849	T	C	96797849	3	2	31	1	0	0	0	0	1	0	0	0	1098	1783	62	5	4770	5	ATG2B	14	96797849	Missense_Mutation	SNP	T	TCGA-A2-A0CS-01A-11D-A10Y-09		96797849	10551691	26	1614										
PRSS33	0	genome.wustl.edu	37	chr16	2834663	2834663	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	cattagaagctgacgcgagcCtgaatccaggggctatatgt	12	9	0	3			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	16	2834663	2834663	C	G	SNP	PRSS33	ENST00000293851	human	ensembl	69_37n	-1	known	missense	c.825	p.Q275H	0.961	superfamily_Pept_cys/ser_Trypsin-like,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS33	HGNC	ENSG00000103355	43	0	0	51	23	31.08	-	-	-	G	2834663	C	G	2834663	3	3	31	1	0	0	0	0	1	0	0	0	12703	680	24	4	21	4	PRSS33	16	2834663	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		2834663	87520090	27	1615										
TRIM16L	0	genome.wustl.edu	37	chr17	18638608	18638608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gggatcctttccttctatggCgtagagtatgattccatgac	10	9	1	3			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	17	18638608	18638608	C	T	SNP	TRIM16L	ENST00000395902	human	ensembl	69_37n	1	known	silent	c.1044	p.G348	0.291	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIM16L	HGNC	ENSG00000108448	173	0	0	267	112	29.47	-	-	-	T	18638608	C	T	18638608	2	4	31	1	0	0	0	0	0	0	0	1	16588	755	27	1		1	TRIM16L	17	18638608	Silent	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		18638608	62556602	28	1616										
KRT35	0	genome.wustl.edu	37	chr17	39633898	39633898	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gcccggatctcggccagctgGgcctccacgttggtgatcat	13	14	2	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	17	39633898	39633898	G	T	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	silent	c.1092	p.A364	0.000	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	103	0	0	210	110	34.27	-	-	-	T	39633898	G	T	39633898	2	4	31	1	0	0	0	0	0	0	0	1	8525	1219	43	4		4	KRT35	17	39633898	Silent	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	20995290	39633898	41561312	29	1617										
S1PR5	0	genome.wustl.edu	37	chr19	10625096	10625096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gatgcccacgaaggcgagcaCgcagaagagcacgtaggcct	14	12	0	2			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	19	10625096	10625096	C	T	SNP	S1PR5	ENST00000333430	human	ensembl	69_37n	-1	known	missense	c.592	p.V198M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG8_S1P_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR5	HGNC	ENSG00000180739	9	0	0	10	9	47.37	-	-	-	T	10625096	C	T	10625096	3	4	31	1	0	0	0	0	1	0	0	0	13883	536	19	1	608	1	S1PR5	19	10625096	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		10625096	48503887	30	1618										
KIF16B	0	genome.wustl.edu	37	chr20	16486798	16486798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gatcaaccaagtggatcttaCtgacggtttcacatggcatt	9	9	3	1			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	20	16486798	16486798	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.737	p.S246N	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	38	0	0	81	44	35.2	-	-	-	T	16486798	C	T	16486798	3	4	31	1	0	0	0	0	1	0	0	0	8330	565	20	4	3292	4	KIF16B	20	16486798	Missense_Mutation	SNP	C	TCGA-A2-A0CS-01A-11D-A10Y-09		16486798	46538722	31	1619										
FAM120C	0	genome.wustl.edu	37	chrX	54161503	54161503	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	gagttgggtcccactgggaaTggtggtggatatttcacttt	14	6	1	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	X	54161503	54161503	T	A	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	silent	c.1377	p.P459	0.963	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	166	0	0	269	50	15.67	-	-	-	A	54161503	T	A	54161503	2	1	31	1	0	0	0	0	0	0	0	1	5458	1451	51	5		5	FAM120C	23	54161503	Silent	SNP	T	TCGA-A2-A0CS-01A-11D-A10Y-09		54161503	101109057	32	1620										
ATP2B3	0	genome.wustl.edu	37	chrX	152807217	152807217	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0303030303030303	1	1	0.536144578313253	0	0.584884994523549	1	1	0	catcctgctgtccgtcatctGtgtggtgctggtcacggcct	12	13	3	0			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe96b832-cb86-4499-948a-5124a43d5c95	748f5a6c-a00e-4da7-a556-d5460c51923d	X	152807217	152807217	G	T	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.497	p.C166F	0.879	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	93	0	0	202	33	14.04	-	-	-	T	152807217	G	T	152807217	3	4	31	1	0	0	0	0	1	0	0	0	1145	1377	48	4	507	4	ATP2B3	23	152807217	Missense_Mutation	SNP	G	TCGA-A2-A0CS-01A-11D-A10Y-09	98645714	152807217	2463343	33	1621										
SLC2A1	0	genome.wustl.edu	37	chr1	43393369	43393369	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gctggacgtggaccctggctGaagagttcagccacgatgaa	14	10	1	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	43393369	43393369	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	69_37n	-1	known	silent	c.1185	p.F395	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394	25	0	0	14	7	33.33	-	-	-	A	43393369	G	A	43393369	2	1	32	1	0	0	0	0	0	0	0	1	14627	1281	45	2		2	SLC2A1	1	43393369	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		43393369	205857252	1	1622										
LRRIQ3	0	genome.wustl.edu	37	chr1	74507579	74507579	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgatatcctaaaactggtatCcaatttttcatccacaattt	3	9	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	74507579	74507579	C	A	SNP	LRRIQ3	ENST00000354431	human	ensembl	69_37n	-1	known	missense	c.1036	p.D346Y	0.013	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620	195	1	0.51	102	93	47.45	-	-	-	A	74507579	C	A	74507579	3	1	32	1	0	0	0	0	1	0	0	0	9096	855	30	2	846	2	LRRIQ3	1	74507579	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	31114210	74507579	174743042	2	1623										
TCHH	0	genome.wustl.edu	37	chr1	152085140	152085140	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctcttcctctgcacggcgctCttcccgttcttgccattctt	6	17	5	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	152085140	152085140	C	G	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.553	p.E185Q	0.006	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	101	0	0	78	55	41.35	-	-	-	G	152085140	C	G	152085140	3	3	32	1	0	0	0	0	1	0	0	0	15795	922	32	2	5282	2	TCHH	1	152085140	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	77577561	152085140	97165481	3	1624										
UBAP2L	0	genome.wustl.edu	37	chr1	154229568	154229568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gtggagagtgaggcgaatctCcattcttcctccagcacttt	10	11	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	154229568	154229568	C	T	SNP	UBAP2L	ENST00000433615	human	ensembl	69_37n	1	known	missense	c.178	p.P60S	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBAP2L	HGNC	ENSG00000143569	134	0	0	126	91	41.94	-	-	-	T	154229568	C	T	154229568	3	4	32	1	0	0	0	0	1	0	0	0	16935	842	30	2	2257	2	UBAP2L	1	154229568	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	2144428	154229568	95021053	4	1625										
ASPM	0	genome.wustl.edu	37	chr1	197111819	197111819	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgttcacccactgcactgttGagacatctttttgcttttgg	8	10	2	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	197111819	197111819	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.1563	p.L521	0.805	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	209	1	0.47	234	124	34.54	-	-	-	T	197111819	G	T	197111819	2	4	32	1	0	0	0	0	0	0	0	1	1060	1277	45	2		2	ASPM	1	197111819	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	42882251	197111819	52138802	5	1626										
SIPA1L2	0	genome.wustl.edu	37	chr1	232561348	232561348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cacttacttctcaggctcccCatgctgggtgcggggtgggc	14	13	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	232561348	232561348	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.4617	p.M1539I	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	12	0	0	1	14	87.5	-	-	-	T	232561348	C	T	232561348	3	4	32	1	0	0	0	0	1	0	0	0	14419	594	21	4	575	4	SIPA1L2	1	232561348	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	35449529	232561348	16689273	6	1627										
LYST	0	genome.wustl.edu	37	chr1	235969153	235969153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ttgaagtgaggtctcactttCttgacttgtaaatagctttg	9	6	2	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	235969153	235969153	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.3283	p.E1095K	0.998	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	123	0	0	107	54	33.33	-	-	-	T	235969153	C	T	235969153	3	4	32	1	0	0	0	0	1	0	0	0	9195	922	32	2	8314	2	LYST	1	235969153	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	3407805	235969153	13281468	7	1628										
CNGA3	0	genome.wustl.edu	37	chr2	99013495	99013495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggagctggccagggcgggcgCggaccccaaggaccttgagg	19	12	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	2	99013495	99013495	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	missense	c.1862	p.A621V	0.088	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	40	0	0	41	8	16.33	-	-	-	T	99013495	C	T	99013495	3	4	32	1	0	0	0	0	1	0	0	0	3628	768	27	1	1888	1	CNGA3	2	99013495	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		99013495	144185878	8	1629										
MARS2	0	genome.wustl.edu	37	chr2	198570580	198570581	+	Frame_Shift_Ins	INS	-	-	G													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggtggctgtgcagcacttctINSggggggtgcttaagtcccgc							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	2	198570580	198570581	-	G	INS	MARS2	ENST00000282276	human	ensembl	69_37n	1	known	frame_shift_ins	c.451_452	p.V153fs	1.000:1.000	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626	26	0	0	24	3	11.11	-	-	-	G	198570581	-	G	198570580	7	5	32	1	0	1	1	0	0	0	0	0	9388	1580	55	0	453	0	MARS2	2	198570580	Frame_Shift_Ins	INS	-	TCGA-A2-A0CT-01A-31W-A071-09	99557085	198570580	44628793	9	1630										
IL17RC	0	genome.wustl.edu	37	chr3	9974335	9974335	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gtgtggctggcctgcctactCtttgccgctgcgctttccct	11	15	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	9974335	9974335	C	T	SNP	IL17RC	ENST00000295981	human	ensembl	69_37n	1	known	silent	c.1644	p.L548	0.016	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702	36	0	0	53	29	35.37	-	-	-	T	9974335	C	T	9974335	2	4	32	1	0	0	0	0	0	0	0	1	7695	900	32	2		2	IL17RC	3	9974335	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		9974335	188048095	10	1631										
CLASP2	0	genome.wustl.edu	37	chr3	33644558	33644558	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	agcagcattcacatcaatgtCacttcgtgaacgctgcaggc	9	12	3	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	33644558	33644558	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.1810	p.D604N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	21	0	0	30	10	25	-	-	-	T	33644558	C	T	33644558	3	4	32	1	0	0	0	0	1	0	0	0	3485	826	29	2	2794	2	CLASP2	3	33644558	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	23670223	33644558	164377872	11	1632										
DNAH1	0	genome.wustl.edu	37	chr3	52433155	52433156	+	Frame_Shift_Ins	INS	-	-	T													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ccaggctttcttaacaggcaINSctctgcagaattttgcccgc							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	52433155	52433156	-	T	INS	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	frame_shift_ins	c.12379_12380	p.T4127fs	0.995:0.989	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	149	0	0	114	119	51.07	-	-	-	T	52433156	-	T	52433155	7	5	32	1	0	1	1	0	0	0	0	0	4633	159	6	0	12677	0	DNAH1	3	52433155	Frame_Shift_Ins	INS	-	TCGA-A2-A0CT-01A-31W-A071-09	18788597	52433155	145589275	12	1633										
FLNB	0	genome.wustl.edu	37	chr3	58135903	58135904	+	In_Frame_Ins	INS	-	-	CGT													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cacccgcaccagtcgggcccINScgtccgtggccactgtcggg							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	58135903	58135904	-	CGT	INS	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	in_frame_ins	c.6316_6317	p.2108in_frame_insS	1.000:1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	86	0	0	29	38	56.72	-	-	-	CGT	58135904	-	CGT	58135903	7	5	32	1	0	1	1	0	0	0	0	0	5980	623	22	0	6563	0	FLNB	3	58135903	In_Frame_Ins	INS	-	TCGA-A2-A0CT-01A-31W-A071-09	5702748	58135903	139886527	13	1634										
GRK4	0	genome.wustl.edu	37	chr4	3039136	3039136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgtaaggacgtcctggatatCgagcagttctcggtggtgaa	14	7	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	3039136	3039136	C	G	SNP	GRK4	ENST00000398052	human	ensembl	69_37n	1	known	missense	c.1443	p.I481M	0.198	smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388	153	0	0	100	97	49.24	-	-	-	G	3039136	C	G	3039136	3	3	32	1	0	0	0	0	1	0	0	0	6842	874	31	3	1497	3	GRK4	4	3039136	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		3039136	188115140	14	1635										
ZNF518B	0	genome.wustl.edu	37	chr4	10445216	10445216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	aacctgaaaaattgaaggatCcttgagacagcggctaggtt	11	7	0	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	10445216	10445216	C	T	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.2737	p.D913N	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	165	0	0	200	110	35.37	-	-	-	T	10445216	C	T	10445216	3	4	32	1	0	0	0	0	1	0	0	0	18059	855	30	2	491	2	ZNF518B	4	10445216	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	7406080	10445216	180709060	15	1636										
FRYL	0	genome.wustl.edu	37	chr4	48636482	48636482	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ttggaagaagcacagtatttAtttactttgctgactggcgc	10	7	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	48636482	48636482	A	G	SNP	FRYL	ENST00000505759	human	ensembl	69_37n	-1	novel	silent	c.222	p.N74	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	FRYL	HGNC	ENSG00000075539	101	0	0	145	81	35.84	-	-	-	G	48636482	A	G	48636482	2	3	32	1	0	0	0	0	0	0	0	1	6113	464	16	5		5	FRYL	4	48636482	Silent	SNP	A	TCGA-A2-A0CT-01A-31W-A071-09	38191266	48636482	142517794	16	1637										
C4orf40	0	genome.wustl.edu	37	chr4	71021774	71021774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	atttttctttattttagagaCggttccccttcattggtgag	8	7	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	71021774	71021774	C	T	SNP	C4orf40	ENST00000344526	human	ensembl	69_37n	1	known	missense	c.55	p.R19W	0.004	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	113	0	0	86	63	42.28	-	-	-	T	71021774	C	T	71021774	3	4	32	1	0	0	0	0	1	0	0	0	2290	527	19	1	61	1	C4orf40	4	71021774	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	22385292	71021774	120132502	17	1638										
ANK2	0	genome.wustl.edu	37	chr4	114238897	114238897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gttccgacaggtctcacactCtgagccatgcctcctacctg	8	16	2	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	114238897	114238897	C	G	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2728	p.L910V	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	61	0	0	63	28	30.77	-	-	-	G	114238897	C	G	114238897	3	3	32	1	0	0	0	0	1	0	0	0	621	912	32	2	2851	2	ANK2	4	114238897	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	43217123	114238897	76915379	18	1639										
TKTL2	0	genome.wustl.edu	37	chr4	164393824	164393824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctcagggtgttctttcctgaAtatctcagaaaaggtggagt	11	7	3	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	164393824	164393824	A	G	SNP	TKTL2	ENST00000280605	human	ensembl	69_37n	-1	known	missense	c.1063	p.F355L	0.995	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005	146	0	0	98	107	51.94	-	-	-	G	164393824	A	G	164393824	3	3	32	1	0	0	0	0	1	0	0	0	16031	101	4	5	821	5	TKTL2	4	164393824	Missense_Mutation	SNP	A	TCGA-A2-A0CT-01A-31W-A071-09	50154927	164393824	26760452	19	1640										
TSLP	0	genome.wustl.edu	37	chr5	110411667	110411667	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	aatgctactcaggcaatgaaGaagaggagaaaaaggaaagt	12	4	1	4			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	110411667	110411667	G	A	SNP	TSLP	ENST00000344895	human	ensembl	69_37n	1	known	silent	c.375	p.K125	0.000	NULL	NULL	-	no_errors	TSLP	HGNC	ENSG00000145777	135	0	0	103	24	18.9	-	-	-	A	110411667	G	A	110411667	2	1	32	1	0	0	0	0	0	0	0	1	16724	933	33	2		2	TSLP	5	110411667	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		110411667	70503593	20	1641										
PCDHGB4	0	genome.wustl.edu	37	chr5	140768708	140768708	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	aatccagagtacaatataacCgttacggcaacagatcgggg	10	9	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	140768708	140768708	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.1257	p.T419	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	111	0	0	98	64	39.51	-	-	-	T	140768708	C	T	140768708	2	4	32	1	0	0	0	0	0	0	0	1	11638	639	23	1		1	PCDHGB4	5	140768708	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	30357041	140768708	40146552	21	1642										
LARS	0	genome.wustl.edu	37	chr5	145537087	145537087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	caccattcaccgtctcaaatCcaatgtacttcatatcagga	4	13	4	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	145537087	145537087	C	T	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	missense	c.944	p.G315E	0.995	pfam_aa-tRNA-synth_Ia,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	106	0	0	86	54	38.57	-	-	-	T	145537087	C	T	145537087	3	4	32	1	0	0	0	0	1	0	0	0	8688	855	30	2	2678	2	LARS	5	145537087	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	4768379	145537087	35378173	22	1643										
ITK	0	genome.wustl.edu	37	chr5	156638350	156638350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgctccagatcgtgagagccGgcagcgctgggtgctggccc	16	13	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	156638350	156638350	G	A	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.296	p.R99Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	74	0	0	51	30	37.04	-	-	-	A	156638350	G	A	156638350	3	1	32	1	0	0	0	0	1	0	0	0	7963	1116	39	1	306	1	ITK	5	156638350	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	11101263	156638350	24276910	23	1644										
BTNL3	0	genome.wustl.edu	37	chr5	180420100	180420100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cctcggacatcggcctgtatGggtgctggttcagttcccag	13	12	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	180420100	180420100	G	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	missense	c.337	p.G113R	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	41	0	0	31	30	49.18	-	-	-	A	180420100	G	A	180420100	3	1	32	1	0	0	0	0	1	0	0	0	1575	1348	47	4	343	4	BTNL3	5	180420100	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	23781750	180420100	495160	24	1645										
CDYL	0	genome.wustl.edu	37	chr6	4943943	4943943	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ccaccttcggacagagtccaGatggctgttctaccgttatg	10	12	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	4943943	4943943	G	A	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	missense	c.1447	p.D483N	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	88	0	0	16	60	78.95	-	-	-	A	4943943	G	A	4943943	3	1	32	1	0	0	0	0	1	0	0	0	3214	942	33	2	1303	2	CDYL	6	4943943	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		4943943	166171124	25	1646										
ABCF1	0	genome.wustl.edu	37	chr6	30558385	30558385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctgtgggtggtggaggagcaGagtgttagccaaatcgatgg	18	5	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	30558385	30558385	G	C	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.2445	p.Q815H	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	440	0	0	578	91	13.6	-	-	-	C	30558385	G	C	30558385	3	2	32	1	0	0	0	0	1	0	0	0	65	933	33	2	2543	2	ABCF1	6	30558385	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	25614442	30558385	140556682	26	1647										
TAP1	0	genome.wustl.edu	37	chr6	32813449	32813449	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gttcccccctcccggatagcGcctccttccagaaagaggat	9	16	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	32813449	32813449	G	A	SNP	TAP1	ENST00000354258	human	ensembl	69_37n	-1	known	silent	c.2334	p.G778	0.054	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_ABC_B2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394	27	0	0	52	17	24.64	-	-	-	A	32813449	G	A	32813449	2	1	32	1	0	0	0	0	0	0	0	1	15642	1074	38	1		1	TAP1	6	32813449	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	2255064	32813449	138301618	27	1648										
TBCC	0	genome.wustl.edu	37	chr6	42713573	42713573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cctcctccagccgctcgaccGactccgcgcgctccagaagc	9	21	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	42713573	42713573	G	A	SNP	TBCC	ENST00000244625	human	ensembl	69_37n	-1	known	missense	c.239	p.S80L	0.301	NULL	pfam_Tubulin-bd_cofactor_C,smart_CARP_motif	-	no_errors	TBCC	HGNC	ENSG00000124659	39	0	0	32	42	56.76	-	-	-	A	42713573	G	A	42713573	3	1	32	1	0	0	0	0	1	0	0	0	15726	1059	37	1	805	1	TBCC	6	42713573	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	9900124	42713573	128401494	28	1649										
TTBK1	0	genome.wustl.edu	37	chr6	43251629	43251629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gccatgctatgccaggctctCgccccaggagccgtatccct	10	17	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	43251629	43251629	C	T	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	missense	c.3151	p.R1051C	0.734	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	39	0	0	36	22	37.93	-	-	-	T	43251629	C	T	43251629	3	4	32	1	0	0	0	0	1	0	0	0	16773	884	31	1	3201	1	TTBK1	6	43251629	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	538056	43251629	127863438	29	1650										
TBX18	0	genome.wustl.edu	37	chr6	85448266	85448266	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggtcagagtccgtagtgatgGtcgccagaatgcatatgatt	13	7	1	4			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	85448266	85448266	G	T	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	missense	c.1048	p.P350T	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	208	0	0	45	128	73.56	-	-	-	T	85448266	G	T	85448266	3	4	32	1	0	0	0	0	1	0	0	0	15748	1261	44	4	783	4	TBX18	6	85448266	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	42196637	85448266	85666801	30	1651										
TCP10	0	genome.wustl.edu	37	chr6	167790110	167790110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gtgctggacttctgtcttgaCgtctcccgggaggacttttc	12	11	3	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	167790110	167790110	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.001	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	31	0	0	9	2	18.18	-	-	-	T	167790110	C	T	167790110	3	4	32	1	0	0	0	0	1	0	0	0	15805	536	19	1	496	1	TCP10	6	167790110	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	82341844	167790110	3324957	31	1652										
ABCB1	0	genome.wustl.edu	37	chr7	87135240	87135240	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctttctgtatccagagctgaCgtggcttcatccaaaagcaa	8	11	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	7	87135240	87135240	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.3609	p.T1203	0.799	pfam_ABC_transporter-like,pfam_ABC_ATPase_put,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	85	0	0	108	23	17.56	-	-	-	T	87135240	C	T	87135240	2	4	32	1	0	0	0	0	0	0	0	1	40	523	19	1		1	ABCB1	7	87135240	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		87135240	72003423	32	1653										
LYN	0	genome.wustl.edu	37	chr8	56864664	56864664	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgtatcagcgacatgattaaAcattaccaaagtaagtaaaa	6	6	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	56864664	56864664	A	T	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.627	p.K209N	0.913	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	122	0	0	244	91	27.16	-	-	-	T	56864664	A	T	56864664	3	4	32	1	0	0	0	0	1	0	0	0	9174	40	2	5	649	5	LYN	8	56864664	Missense_Mutation	SNP	A	TCGA-A2-A0CT-01A-31W-A071-09		56864664	89499358	33	1654										
EXT1	0	genome.wustl.edu	37	chr8	119122505	119122505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cttgaataccagcatgtactTcctgagaggagggatggtgt	13	7	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	119122505	119122505	T	C	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	missense	c.781	p.K261E	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	190	0	0	215	32	12.96	-	-	-	C	119122505	T	C	119122505	3	2	32	1	0	0	0	0	1	0	0	0	5360	1792	62	5	1503	5	EXT1	8	119122505	Missense_Mutation	SNP	T	TCGA-A2-A0CT-01A-31W-A071-09	62257841	119122505	27241517	34	1655										
ATAD2	0	genome.wustl.edu	37	chr8	124340530	124340530	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tctgtacatgctgtagtcttCctagagtcttcaagctcatt	7	10	5	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	124340530	124340530	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	silent	c.3768	p.R1256	0.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	93	0	0	191	73	27.65	-	-	-	T	124340530	C	T	124340530	2	4	32	1	0	0	0	0	0	0	0	1	1075	854	30	2		2	ATAD2	8	124340530	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	5218025	124340530	22023492	35	1656										
ZNF658	0	genome.wustl.edu	37	chr9	40772564	40772564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	catagggtttctcccctgagCgagttctaagatgtgctctg	11	10	3	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	9	40772564	40772564	C	T	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.2711	p.R904H	0.707	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	264	0	0	60	242	79.87	-	-	-	T	40772564	C	T	40772564	3	4	32	1	0	0	0	0	1	0	0	0	18165	768	27	1	472	1	ZNF658	9	40772564	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		40772564	100440867	36	1657										
CBWD5	0	genome.wustl.edu	37	chr9	70483224	70483224	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	agtggtctctaacagtatgtCatcaaatttccccttctttt	5	10	4	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	9	70483224	70483224	C	A	SNP	CBWD5	ENST00000382405	human	ensembl	69_37n	-1	known	missense	c.394	p.D132Y	1.000	pfam_Cbl_biosynth_CobW-like	pfam_Cbl_biosynth_CobW-like,pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD5	HGNC	ENSG00000147996	51	0	0	10	2	16.67	-	-	-	A	70483224	C	A	70483224	3	1	32	1	0	0	0	0	1	0	0	0	2740	826	29	2	689	2	CBWD5	9	70483224	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	29710660	70483224	70730207	37	1658										
SETX	0	genome.wustl.edu	37	chr9	135140193	135140195	+	In_Frame_Del	DEL	ACC	ACC	-													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tctagcttgctgctgggcaaAccaccctggggtctggaccc							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	ACC	ACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	9	135140193	135140195	ACC	-	DEL	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	in_frame_del	c.7554_7552	p.G2518in_frame_del	0.051:0.066:0.043	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	123	0	0	106	55	33.74	-	-	-	-	135140195	ACC	-	135140193	7	5	32	1	0	1	0	1	0	0	0	0	14229	30	2	0	570	0	SETX	9	135140193	In_Frame_Del	DEL	ACC	TCGA-A2-A0CT-01A-31W-A071-09	64656969	135140193	6073238	38	1659										
NUDT5	0	genome.wustl.edu	37	chr10	12215795	12215795	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	agcagctgcttctggggtttCaccatcatctatgagacctg	10	11	4	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	12215795	12215795	C	T	SNP	NUDT5	ENST00000378937	human	ensembl	69_37n	-1	known	missense	c.346	p.E116K	0.998	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_errors	NUDT5	HGNC	ENSG00000165609	191	0	0	129	48	26.97	-	-	-	T	12215795	C	T	12215795	3	4	32	1	0	0	0	0	1	0	0	0	10815	835	29	2	372	2	NUDT5	10	12215795	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		12215795	123318952	39	1660										
FRMD4A	0	genome.wustl.edu	37	chr10	13782556	13782556	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgaccgttcagtttcttgtaGtgctcaatgactctgtcttc	8	10	5	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	13782556	13782556	G	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	silent	c.570	p.H190	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	89	0	0	105	13	11.02	-	-	-	A	13782556	G	A	13782556	2	1	32	1	0	0	0	0	0	0	0	1	6100	1020	36	4		4	FRMD4A	10	13782556	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	1566761	13782556	121752191	40	1661										
KIF11	0	genome.wustl.edu	37	chr10	94393475	94393475	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cagaaaatgtgtctactcatGtttctcagatttttaatatg	6	6	3	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	94393475	94393475	G	T	SNP	KIF11	ENST00000260731	human	ensembl	69_37n	1	known	missense	c.1798	p.V600F	0.331	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160	115	0	0	86	31	26.5	-	-	-	T	94393475	G	T	94393475	3	4	32	1	0	0	0	0	1	0	0	0	8324	1377	48	4	1852	4	KIF11	10	94393475	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	80610919	94393475	41141272	41	1662										
INPP5F	0	genome.wustl.edu	37	chr10	121583335	121583335	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tttgggttgcagatacccttCagtgcattgcagagatgctg	12	8	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	121583335	121583335	C	T	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	nonsense	c.2170	p.Q724*	1.000	NULL	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	70	0	0	38	42	52.5	-	-	-	T	121583335	C	T	121583335	4	4	32	1	0	0	0	0	0	1	0	0	7812	827	29	2	2244	2	INPP5F	10	121583335	Nonsense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	27189860	121583335	13951412	42	1663										
OR10A6	0	genome.wustl.edu	37	chr11	7949711	7949711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ttcattaaggccacaaaaggGaaaactagatacccatgatg	8	8	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	11	7949711	7949711	G	A	SNP	OR10A6	ENST00000309838	human	ensembl	69_37n	-1	known	missense	c.499	p.P167S	0.457	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393	262	0	0	358	143	28.49	-	-	-	A	7949711	G	A	7949711	3	1	32	1	0	0	0	0	1	0	0	0	10967	1174	41	2	448	2	OR10A6	11	7949711	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		7949711	127056805	43	1664										
MLL2	0	genome.wustl.edu	37	chr12	49427728	49427728	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctgccatgagattagtgtgcTccttctgctgtttccggacc	10	12	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	49427728	49427728	T	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.10760	p.E3587V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	30	0	0	10	15	57.69	-	-	-	A	49427728	T	A	49427728	3	1	32	1	0	0	0	0	1	0	0	0	9692	1551	54	5	5917	5	MLL2	12	49427728	Missense_Mutation	SNP	T	TCGA-A2-A0CT-01A-31W-A071-09		49427728	84424167	44	1665										
MCRS1	0	genome.wustl.edu	37	chr12	49953743	49953743	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	atgttccaggacctcatctcGcatgtccctgaggggcaaga	11	12	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	49953743	49953743	G	C	SNP	MCRS1	ENST00000357123	human	ensembl	69_37n	-1	known	missense	c.928	p.R310G	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778	46	0	0	36	11	23.4	-	-	-	C	49953743	G	C	49953743	3	2	32	1	0	0	0	0	1	0	0	0	9470	1095	38	3	523	3	MCRS1	12	49953743	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	526015	49953743	83898152	45	1666										
KRT1	0	genome.wustl.edu	37	chr12	53069105	53069105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	agagctcccgccgccagagcCccggccgccagagctgccgc	13	20	0	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	53069105	53069105	C	T	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.1807	p.G603S	0.008	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	76	0	0	55	19	25.33	-	-	-	T	53069105	C	T	53069105	3	4	32	1	0	0	0	0	1	0	0	0	8500	623	22	4	131	4	KRT1	12	53069105	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	3115362	53069105	80782790	46	1667										
ALDH1L2	0	genome.wustl.edu	37	chr12	105456678	105456678	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	acactcactgcttttccatcGttaccaaaaagaacaagtcc	4	13	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	105456678	105456678	G	A	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	silent	c.909	p.N303	1.000	pfam_Formyl_trans_C,superfamily_Formyl_transferase_C-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	55	0	0	109	36	24.83	-	-	-	A	105456678	G	A	105456678	2	1	32	1	0	0	0	0	0	0	0	1	495	1136	40	1		1	ALDH1L2	12	105456678	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	52387573	105456678	28395217	47	1668										
RCBTB2	0	genome.wustl.edu	37	chr13	49075943	49075943	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	actagaaacttcaggtctgcAgtgtccgggttgtcaaattc	10	9	3	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	13	49075943	49075943	A	T	SNP	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	silent	c.1194	p.T398	0.682	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	57	0	0	8	20	71.43	-	-	-	T	49075943	A	T	49075943	2	4	32	1	0	0	0	0	0	0	0	1	13255	175	7	5		5	RCBTB2	13	49075943	Silent	SNP	A	TCGA-A2-A0CT-01A-31W-A071-09		49075943	66093935	48	1669										
LTBP2	0	genome.wustl.edu	37	chr14	74972768	74972768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cacctccagccccccgtgggCggcagtgcccctcctgggca	12	20	0	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	14	74972768	74972768	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.4160	p.R1387H	0.994	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	52	0	0	36	11	23.4	-	-	-	T	74972768	C	T	74972768	3	4	32	1	0	0	0	0	1	0	0	0	9140	768	27	1	1341	1	LTBP2	14	74972768	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		74972768	32376772	49	1670										
SERPINA10	0	genome.wustl.edu	37	chr14	94756847	94756847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgaggggctggggtctctggCgactgaggactgggggccaa	20	8	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	14	94756847	94756847	C	T	SNP	SERPINA10	ENST00000261994	human	ensembl	69_37n	-1	known	silent	c.84	p.S28	0.000	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093	23	0	0	5	16	76.19	-	-	-	T	94756847	C	T	94756847	2	4	32	1	0	0	0	0	0	0	0	1	14175	755	27	1		1	SERPINA10	14	94756847	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	19784079	94756847	12592693	50	1671										
HCN4	0	genome.wustl.edu	37	chr15	73621931	73621931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	taccttttcctggtactggcGccgggaggagtccagggact	14	11	0	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	15	73621931	73621931	G	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.1573	p.R525C	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	46	0	0	10	33	76.74	-	-	-	A	73621931	G	A	73621931	3	1	32	1	0	0	0	0	1	0	0	0	7050	1087	38	1	2058	1	HCN4	15	73621931	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		73621931	28909461	51	1672										
FBXO22	0	genome.wustl.edu	37	chr15	76196845	76196845	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tcctcagcgtgtgccgcttaTggagggagtgtgtgcgcaga	16	9	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	15	76196845	76196845	T	C	SNP	FBXO22	ENST00000308275	human	ensembl	69_37n	1	known	missense	c.154	p.W52R	0.992	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like	pfam_FIST_C_domain,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO22	HGNC	ENSG00000167196	60	0	0	10	35	77.78	-	-	-	C	76196845	T	C	76196845	3	2	32	1	0	0	0	0	1	0	0	0	5780	1464	51	5	160	5	FBXO22	15	76196845	Missense_Mutation	SNP	T	TCGA-A2-A0CT-01A-31W-A071-09	2574914	76196845	26334547	52	1673										
TBL3	0	genome.wustl.edu	37	chr16	2024405	2024405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggaggacatcactgcctttgAcctcagccctgacaacgagg	11	13	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	2024405	2024405	A	G	SNP	TBL3	ENST00000568546	human	ensembl	69_37n	1	known	missense	c.218	p.D73G	0.955	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp13,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL3	HGNC	ENSG00000183751	20	0	0	30	7	18.42	-	-	-	G	2024405	A	G	2024405	3	3	32	1	0	0	0	0	1	0	0	0	15738	275	10	5	232	5	TBL3	16	2024405	Missense_Mutation	SNP	A	TCGA-A2-A0CT-01A-31W-A071-09		2024405	88330348	53	1674										
ZSCAN10	0	genome.wustl.edu	37	chr16	3140511	3140511	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ctagccgcagcgccccgtccGagcgactgggcgcaaggctc	14	17	0	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	3140511	3140511	G	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182	19	0	0	18	11	37.93	-	-	-	A	3140511	G	A	3140511	2	1	32	1	0	0	0	0	0	0	0	1	18320	1045	37	1		1	ZSCAN10	16	3140511	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	1116106	3140511	87214242	54	1675										
MYH11	0	genome.wustl.edu	37	chr16	15818522	15818522	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	acctggatgttgagagtggaGatgtggcgctccaggttctg	16	7	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	15818522	15818522	G	C	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.4119	p.I1373M	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	140	0	0	74	67	47.52	-	-	-	C	15818522	G	C	15818522	3	2	32	1	0	0	0	0	1	0	0	0	10103	932	33	2	1903	2	MYH11	16	15818522	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	12678011	15818522	74536231	55	1676										
ADCY7	0	genome.wustl.edu	37	chr16	50324435	50324435	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggcggtgtttgcggccctctCtgtgctgatgtacgtcgagt	15	10	1	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	50324435	50324435	C	G	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.239	p.S80C	0.985	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	12	0	0	21	6	22.22	-	-	-	G	50324435	C	G	50324435	3	3	32	1	0	0	0	0	1	0	0	0	299	913	32	2	245	2	ADCY7	16	50324435	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	34505913	50324435	40030318	56	1677										
GPR97	0	genome.wustl.edu	37	chr16	57714456	57714456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ccacggtgcatatcctcacaCgcatctcccaggcgggctgt	10	16	2	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	57714456	57714456	C	T	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	missense	c.808	p.R270C	0.144	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	23	0	0	1	13	92.86	-	-	-	T	57714456	C	T	57714456	3	4	32	1	0	0	0	0	1	0	0	0	6771	536	19	1	838	1	GPR97	16	57714456	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	7390021	57714456	32640297	57	1678										
NXN	0	genome.wustl.edu	37	chr17	729229	729229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tcatctcggatcaccagcagCccgttcctgcacacaacctt	6	17	3	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	729229	729229	C	T	SNP	NXN	ENST00000571684	human	ensembl	69_37n	-1	putative	missense	c.13	p.A5T	0.961	NULL	pfam_AhpC/TSA,pfam_Redoxin,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NXN	HGNC	ENSG00000167693	34	0	0	11	4	26.67	-	-	-	T	729229	C	T	729229	3	4	32	1	0	0	0	0	1	0	0	0	10860	726	26	4	885	4	NXN	17	729229	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		729229	80465981	58	1679										
MYH10	0	genome.wustl.edu	37	chr17	8384646	8384646	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cgtgggagactcacttgccaGaggcgctgttggtgatctcg	15	10	2	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	8384646	8384646	G	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.5228	p.S1743F	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	27	0	0	30	7	18.92	-	-	-	A	8384646	G	A	8384646	3	1	32	1	0	0	0	0	1	0	0	0	10102	942	33	2	789	2	MYH10	17	8384646	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	7655417	8384646	72810564	59	1680										
MYH10	0	genome.wustl.edu	37	chr17	8424562	8424562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tgcggagccaaaagctgtctCagtcataccagtgacttgat	10	10	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	8424562	8424562	C	T	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.1969	p.E657K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	165	0	0	224	111	32.94	-	-	-	T	8424562	C	T	8424562	3	4	32	1	0	0	0	0	1	0	0	0	10102	835	29	2	4128	2	MYH10	17	8424562	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	39916	8424562	72770648	60	1681										
EFCAB5	0	genome.wustl.edu	37	chr17	28380797	28380797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cagttgcagaacaagggtcaCgcagagagtctattgcagaa	12	8	2	3			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	28380797	28380797	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.1825	p.R609C	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	475	0	0	635	271	29.85	-	-	-	T	28380797	C	T	28380797	3	4	32	1	0	0	0	0	1	0	0	0	4973	536	19	1	1863	1	EFCAB5	17	28380797	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	19956235	28380797	52814413	61	1682										
C1QL1	0	genome.wustl.edu	37	chr17	43045072	43045073	+	Frame_Shift_Ins	INS	-	-	C													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cagtgctgatggcgccgctgINSccccccgcgcccggcagccc							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	43045072	43045073	-	C	INS	C1QL1	ENST00000253407	human	ensembl	69_37n	-1	known	frame_shift_ins	c.345_344	p.S116fs	0.846:0.834	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL1	HGNC	ENSG00000131094	9	0	0	13	2	13.33	-	-	-	C	43045073	-	C	43045072	7	5	32	1	0	1	1	0	0	0	0	0	1977	1306	46	0	439	0	C1QL1	17	43045072	Frame_Shift_Ins	INS	-	TCGA-A2-A0CT-01A-31W-A071-09	14664275	43045072	38150138	62	1683										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623542	74623542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	aaagggtggtgcaaagtgttCcaggcggtcccactcactct	12	11	2	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	74623542	74623542	C	G	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	missense	c.955	p.E319Q	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	100	0	0	109	50	31.45	-	-	-	G	74623542	C	G	74623542	3	3	32	1	0	0	0	0	1	0	0	0	15314	864	30	2	875	2	ST6GALNAC1	17	74623542	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	31578470	74623542	6571668	63	1684										
CCDC40	0	genome.wustl.edu	37	chr17	78055837	78055837	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	accagctcatcctgaggctgCagaaggagaagaccaacatg	11	11	1	4			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	78055837	78055837	C	A	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	missense	c.1969	p.Q657K	0.997	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	21	0	0	37	14	27.45	-	-	-	A	78055837	C	A	78055837	3	1	32	1	0	0	0	0	1	0	0	0	2838	711	25	4	2015	4	CCDC40	17	78055837	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	3432295	78055837	3139373	64	1685										
CDH2	0	genome.wustl.edu	37	chr18	25565518	25565518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gccgagtgatggtccaatttCtcttaatagtcactggagat	10	8	2	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	18	25565518	25565518	C	G	SNP	CDH2	ENST00000269141	human	ensembl	69_37n	-1	known	missense	c.1949	p.R650T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558	142	0	0	138	29	17.37	-	-	-	G	25565518	C	G	25565518	3	3	32	1	0	0	0	0	1	0	0	0	3134	913	32	2	791	2	CDH2	18	25565518	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		25565518	52511730	65	1686										
KIAA1468	0	genome.wustl.edu	37	chr18	59854856	59854856	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	aggaacggcgggcagtacttCggctgggcgccggaagtggc	19	10	0	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	18	59854856	59854856	C	A	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	silent	c.118	p.R40	0.998	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	21	0	0	18	14	43.75	-	-	-	A	59854856	C	A	59854856	2	1	32	1	0	0	0	0	0	0	0	1	8288	875	31	3		3	KIAA1468	18	59854856	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	34289338	59854856	18222392	66	1687										
OR2Z1	0	genome.wustl.edu	37	chr19	8841768	8841768	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tatgaccgttatgttgctgtGtgccagcccctgcagtatcc	10	12	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	8841768	8841768	G	T	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	silent	c.378	p.V126	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	146	0	0	153	140	47.62	-	-	-	T	8841768	G	T	8841768	2	4	32	1	0	0	0	0	0	0	0	1	11109	1364	48	4		4	OR2Z1	19	8841768	Silent	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		8841768	50287215	67	1688										
STX10	0	genome.wustl.edu	37	chr19	13260551	13260551	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ccccaggatatcgatggtctCttccaggtcctcgaggtccc	10	15	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	13260551	13260551	C	A	SNP	STX10	ENST00000587230	human	ensembl	69_37n	-1	known	nonsense	c.196	p.E66*	1.000	pfam_Syntaxin-6_N,superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX10	HGNC	ENSG00000104915	46	0	0	52	8	13.33	-	-	-	A	13260551	C	A	13260551	4	1	32	1	0	0	0	0	0	1	0	0	15427	922	32	2	580	2	STX10	19	13260551	Nonsense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	4418783	13260551	45868432	68	1689										
ZNF486	0	genome.wustl.edu	37	chr19	20308633	20308633	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ttactatgcataagataattCatactggagagaaaccatac	6	7	1	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	20308633	20308633	C	G	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	missense	c.1114	p.H372D	0.983	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	155	1	0.64	173	105	37.77	-	-	-	G	20308633	C	G	20308633	3	3	32	1	0	0	0	0	1	0	0	0	18035	826	29	2	1128	2	ZNF486	19	20308633	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	7048082	20308633	38820350	69	1690										
CYP2S1	0	genome.wustl.edu	37	chr19	41703775	41703775	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggcatggggaagcgagaaggCgaggagctgatccaggcgga	20	7	0	2			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	41703775	41703775	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	silent	c.435	p.G145	0.090	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	180	0	0	206	24	10.43	-	-	-	T	41703775	C	T	41703775	2	4	32	1	0	0	0	0	0	0	0	1	4205	755	27	1		1	CYP2S1	19	41703775	Silent	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09	21395142	41703775	17425208	70	1691										
ZNF473	0	genome.wustl.edu	37	chr19	50548923	50548923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	gccttataagtgtaacgaacGtgggaaatccttcaggcata	10	8	1	0			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	50548923	50548923	G	T	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	missense	c.1223	p.R408L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	210	1	0.47	141	137	49.1	-	-	-	T	50548923	G	T	50548923	3	4	32	1	0	0	0	0	1	0	0	0	18027	1145	40	3	1237	3	ZNF473	19	50548923	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09	8845148	50548923	8580060	71	1692										
KCTD17	0	genome.wustl.edu	37	chr22	37455388	37455388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	tcctcctacaactacggcagCgaggaccaggcagagttcct	10	14	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	22	37455388	37455388	C	T	SNP	KCTD17	ENST00000456470	human	ensembl	69_37n	1	novel	missense	c.407	p.A136V	0.132	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCTD17	HGNC	ENSG00000100379	98	0	0	84	24	22.02	-	-	-	T	37455388	C	T	37455388	3	4	32	1	0	0	0	0	1	0	0	0	8158	767	27	1	561	1	KCTD17	22	37455388	Missense_Mutation	SNP	C	TCGA-A2-A0CT-01A-31W-A071-09		37455388	13849178	72	1693										
TBL1X	0	genome.wustl.edu	37	chrX	9683009	9683009	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	ggtgtgctggaacgcccgagGagacaaagtgggtgccagcg	18	9	0	1			TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	X	9683009	9683009	G	T	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	missense	c.1673	p.G558V	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	22	0	0	4	19	82.61	-	-	-	T	9683009	G	T	9683009	3	4	32	1	0	0	0	0	1	0	0	0	15734	1174	41	2	1727	2	TBL1X	23	9683009	Missense_Mutation	SNP	G	TCGA-A2-A0CT-01A-31W-A071-09		9683009	145587551	73	1694										
HCFC1	0	genome.wustl.edu	37	chrX	153219586	153219587	+	Frame_Shift_Ins	INS	-	-	G													0.22972972972973	17	0.000989008489640465	2.64563055991627	5.33794871794872	1.95529257067719	0.523107089291739	1	11	cccgtctcgtgggtctcacaINSgggggggttggagcacaccc							TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	X	153219586	153219587	-	G	INS	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4264_4263	p.C1421fs	1.000:0.875	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	13	0	0	3	2	40	-	-	-	G	153219587	-	G	153219586	7	5	32	1	0	1	1	0	0	0	0	0	7042	188	7	0	1883	0	HCFC1	23	153219586	Frame_Shift_Ins	INS	-	TCGA-A2-A0CT-01A-31W-A071-09	143536577	153219586	2050974	74	1695										
ZNF362	0	genome.wustl.edu	37	chr1	33745932	33745933	+	Frame_Shift_Ins	INS	-	-	C													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	cagggccacggcctgcttggINScccccccaagtccgaacgcg							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	33745932	33745933	-	C	INS	ZNF362	ENST00000373428	human	ensembl	69_37n	1	known	frame_shift_ins	c.557_558	p.K189fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	32	0	0	47	6	11.32	-	-	-	C	33745933	-	C	33745932	7	5	33	1	0	1	1	0	0	0	0	0	17964	1203	42	0	571	0	ZNF362	1	33745932	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09		33745932	215504689	1	1696										
LRIG2	0	genome.wustl.edu	37	chr1	113616247	113616248	+	Frame_Shift_Ins	INS	-	-	C													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gggcgctgtcgggcttgctgINSccccccgacaccgctatcct							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	113616247	113616248	-	C	INS	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	frame_shift_ins	c.219_220	p.D75fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	21	0	0	18	2	10	-	-	-	C	113616248	-	C	113616247	7	5	33	1	0	1	1	0	0	0	0	0	9011	1306	46	0	221	0	LRIG2	1	113616247	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09	79870315	113616247	135634374	2	1697										
IRF2BP2	0	genome.wustl.edu	37	chr1	234743301	234743302	+	Frame_Shift_Ins	INS	-	-	A													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gctattcctcctggtagtggINSagtgaacctggttggcatct							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	234743301	234743302	-	A	INS	IRF2BP2	ENST00000366609	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1346_1345	p.S449fs	1.000:1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP2	HGNC	ENSG00000168264	71	0	0	20	7	25.93	-	-	-	A	234743302	-	A	234743301	7	5	33	1	0	1	1	0	0	0	0	0	7884	1174	41	0	421	0	IRF2BP2	1	234743301	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09	121127054	234743301	14507320	3	1698										
NRBP1	0	genome.wustl.edu	37	chr2	27656951	27656951	+	Frame_Shift_Del	DEL	G	G	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gctgacattaaagagaacaaGgccagggtaagaattttttc							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	27656951	27656951	G	-	DEL	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	frame_shift_del	c.429	p.A144fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	96	0	0	82	54	39.13	-	-	-	-	27656951	G	-	27656951	7	5	33	1	0	1	0	1	0	0	0	0	10715	991	35	0	439	0	NRBP1	2	27656951	Frame_Shift_Del	DEL	G	TCGA-A2-A0CU-01A-12W-A050-09		27656951	215542422	4	1699										
REV1	0	genome.wustl.edu	37	chr2	100019354	100019354	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tcaaagttaaggaattaccaGgggtttctctgcaggaggtc	12	7	2	0			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	100019354	100019354	G	A	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	silent	c.3382	p.L1128	0.966	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	149	0	0	86	22	20.37	-	-	-	A	100019354	G	A	100019354	2	1	33	1	0	0	0	0	0	0	0	1	13322	991	35	4		4	REV1	2	100019354	Silent	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09	72362403	100019354	143180019	5	1700										
GALNTL2	0	genome.wustl.edu	37	chr3	16216886	16216887	+	Frame_Shift_Del	DEL	AG	AG	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gaagctgaggatgagggtgaAgagtacagccctctggaggg							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	3	16216886	16216887	AG	-	DEL	GALNTL2	ENST00000339732	human	ensembl	69_37n	1	known	frame_shift_del	c.228_229	p.E77fs	0.263:0.860	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	130	0	0	163	89	35.32	-	-	-	-	16216887	AG	-	16216886	7	5	33	1	0	1	0	1	0	0	0	0	6272	69	3	0	230	0	GALNTL2	3	16216886	Frame_Shift_Del	DEL	AG	TCGA-A2-A0CU-01A-12W-A050-09		16216886	181805544	6	1701	18	2								
GALNTL2	0	genome.wustl.edu	37	chr3	16216891	16216891	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tgaggatgagggtgaagagtAcagccctctggagggcctgc							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	3	16216891	16216891	A	-	DEL	GALNTL2	ENST00000339732	human	ensembl	69_37n	1	known	frame_shift_del	c.233	p.Y78fs	0.905	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	137	0	0	147	89	37.71	-	-	-	-	16216891	A	-	16216891	7	5	33	1	0	1	0	1	0	0	0	0	6272	391	14	0	235	0	GALNTL2	3	16216891	Frame_Shift_Del	DEL	A	TCGA-A2-A0CU-01A-12W-A050-09	5	16216891	181805539	7	1702	18	2								
LDB2	0	genome.wustl.edu	37	chr4	16504298	16504298	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ctggggtggggggttttctgAtttggtctcttgagtggcgg	19	5	2	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	16504298	16504298	A	T	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.1090	p.S364T	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	146	0	0	129	18	12.24	-	-	-	T	16504298	A	T	16504298	3	4	33	1	0	0	0	0	1	0	0	0	8750	333	12	5	35	5	LDB2	4	16504298	Missense_Mutation	SNP	A	TCGA-A2-A0CU-01A-12W-A050-09		16504298	174649978	8	1703										
DCAF4L1	0	genome.wustl.edu	37	chr4	41984183	41984183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	aaacctctacgtccccaaccGgaaggtgaagtccctgtgct	9	14	1	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	41984183	41984183	G	A	SNP	DCAF4L1	ENST00000333141	human	ensembl	69_37n	1	known	missense	c.374	p.R125Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308	67	0	0	52	9	14.75	-	-	-	A	41984183	G	A	41984183	3	1	33	1	0	0	0	0	1	0	0	0	4303	1116	39	1	376	1	DCAF4L1	4	41984183	Missense_Mutation	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09	25479885	41984183	149170093	9	1704										
YIPF7	0	genome.wustl.edu	37	chr4	44626756	44626756	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	catgaatcacaaggcagccaAtggcactcatgccatacaca	7	13	2	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	44626756	44626756	A	T	SNP	YIPF7	ENST00000332990	human	ensembl	69_37n	-1	known	missense	c.542	p.I181N	0.999	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF7	HGNC	ENSG00000177752	219	0	0	131	25	16.03	-	-	-	T	44626756	A	T	44626756	3	4	33	1	0	0	0	0	1	0	0	0	17580	101	4	5	308	5	YIPF7	4	44626756	Missense_Mutation	SNP	A	TCGA-A2-A0CU-01A-12W-A050-09	2642573	44626756	146527520	10	1705										
TMPRSS11B	0	genome.wustl.edu	37	chr4	69094493	69094493	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gcttctcctgacataaatccAgcacataacattgtatcagt	5	11	2	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	69094493	69094493	A	T	SNP	TMPRSS11B	ENST00000332644	human	ensembl	69_37n	-1	known	silent	c.1056	p.A352	0.998	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11B	HGNC	ENSG00000185873	188	1	0.53	92	11	10.68	-	-	-	T	69094493	A	T	69094493	2	4	33	1	0	0	0	0	0	0	0	1	16335	175	7	5		5	TMPRSS11B	4	69094493	Silent	SNP	A	TCGA-A2-A0CU-01A-12W-A050-09	24467737	69094493	122059783	11	1706										
LRFN2	0	genome.wustl.edu	37	chr6	40400576	40400577	+	Frame_Shift_Ins	INS	-	-	C													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	aggtccagaaaggaaaagggINSctggatgtggctgatggtgt							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	6	40400576	40400577	-	C	INS	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.277_276	p.P92fs	1.000:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	58	0	0	31	17	35.42	-	-	-	C	40400577	-	C	40400576	7	5	33	1	0	1	1	0	0	0	0	0	9004	1203	42	0	2100	0	LRFN2	6	40400576	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09		40400576	130714491	12	1707										
PARP12	0	genome.wustl.edu	37	chr7	139726015	139726015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	acccttgccgtaggaagtgcCatgaacaccacagacccgcc	9	16	0	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	139726015	139726015	C	G	SNP	PARP12	ENST00000263549	human	ensembl	69_37n	-1	known	missense	c.1762	p.G588R	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378	76	0	0	31	27	46.55	-	-	-	G	139726015	C	G	139726015	3	3	33	1	0	0	0	0	1	0	0	0	11530	594	21	4	351	4	PARP12	7	139726015	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09		139726015	19412648	13	1708										
CYP7B1	0	genome.wustl.edu	37	chr8	65527680	65527680	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tgcagcaaacggtcaatttcGtcacgcactgctgccatagc	9	13	2	0			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	8	65527680	65527680	G	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	silent	c.960	p.D320	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	123	0	0	149	21	12.28	-	-	-	A	65527680	G	A	65527680	2	1	33	1	0	0	0	0	0	0	0	1	4228	1136	40	1		1	CYP7B1	8	65527680	Silent	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09		65527680	80836342	14	1709										
CPSF1	0	genome.wustl.edu	37	chr8	145624997	145624997	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ccttgtcggcagcctcacggAcagcactggccgggggctcc							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	8	145624997	145624997	A	-	DEL	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	frame_shift_del	c.1223	p.V408fs	0.026	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	21	0	0	19	32	62.75	-	-	-	-	145624997	A	-	145624997	7	5	33	1	0	1	0	1	0	0	0	0	3854	275	10	0	3216	0	CPSF1	8	145624997	Frame_Shift_Del	DEL	A	TCGA-A2-A0CU-01A-12W-A050-09	80097317	145624997	739025	15	1710										
KDM4C	0	genome.wustl.edu	37	chr9	6793072	6793072	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tccatggaggagttccgggaGttcaacaaataccttgcata	10	9	1	0			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	9	6793072	6793072	G	A	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	silent	c.84	p.E28	0.431	pfam_TF_JmjN,smart_TF_JmjN,pfscan_TF_JmjN	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	79	0	0	94	19	16.81	-	-	-	A	6793072	G	A	6793072	2	1	33	1	0	0	0	0	0	0	0	1	8184	1020	36	4		4	KDM4C	9	6793072	Silent	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09		6793072	134420359	16	1711										
OR56A1	0	genome.wustl.edu	37	chr11	6048841	6048841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gaggggcagggagagccagtGctgccaactctggaagttgg	18	8	1	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	6048841	6048841	G	A	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	missense	c.94	p.H32Y	0.930	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	444	0	0	345	42	10.82	-	-	-	A	6048841	G	A	6048841	3	1	33	1	0	0	0	0	1	0	0	0	11206	1319	46	4	866	4	OR56A1	11	6048841	Missense_Mutation	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09		6048841	128957675	17	1712										
ABCC8	0	genome.wustl.edu	37	chr11	17428939	17428939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	cctgcagaaggccatccctcGaggacatggcacgagatagg	13	12	0	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	17428939	17428939	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.2885	p.S962L	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	180	0	0	191	32	14.35	-	-	-	A	17428939	G	A	17428939	3	1	33	1	0	0	0	0	1	0	0	0	58	1059	37	1	1927	1	ABCC8	11	17428939	Missense_Mutation	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09	11380098	17428939	117577577	18	1713										
EHF	0	genome.wustl.edu	37	chr11	34664214	34664214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gtggtgtaatgaatctcaacCccggcaacaacctccttcac	7	14	2	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	34664214	34664214	C	G	SNP	EHF	ENST00000257831	human	ensembl	69_37n	1	known	missense	c.37	p.P13A	1.000	superfamily_SAM/pointed	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	EHF	HGNC	ENSG00000135373	111	0	0	31	12	27.91	-	-	-	G	34664214	C	G	34664214	3	3	33	1	0	0	0	0	1	0	0	0	5016	623	22	4	39	4	EHF	11	34664214	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09	17235275	34664214	100342302	19	1714										
CLP1	0	genome.wustl.edu	37	chr11	57428789	57428790	+	Frame_Shift_Del	DEL	AT	AT	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	agacaagtgtagctggcttcAttgtggtgaccagtgtggac							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	57428789	57428790	AT	-	DEL	CLP1	ENST00000525602	human	ensembl	69_37n	1	known	frame_shift_del	c.1159_1160	p.I387fs	1.000:1.000	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	CLP1	HGNC	ENSG00000172409	226	0	0	163	72	30.38	-	-	-	-	57428790	AT	-	57428789	7	5	33	1	0	1	0	1	0	0	0	0	3580	217	8	0	1165	0	CLP1	11	57428789	Frame_Shift_Del	DEL	AT	TCGA-A2-A0CU-01A-12W-A050-09	22764575	57428789	77577727	20	1715										
PGA5	0	genome.wustl.edu	37	chr11	61017206	61017206	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ggccattgttgacaccggcaCctctctgctgaccggcccaa	10	16	1	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	61017206	61017206	C	G	SNP	PGA5	ENST00000312403	human	ensembl	69_37n	1	known	missense	c.839	p.T280S	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA5	HGNC	ENSG00000256713	154	0	0	124	106	45.89	-	-	-	G	61017206	C	G	61017206	3	3	33	1	0	0	0	0	1	0	0	0	11846	507	18	4	865	4	PGA5	11	61017206	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09	3588417	61017206	73989310	21	1716										
EML3	0	genome.wustl.edu	37	chr11	62378801	62378802	+	Frame_Shift_Ins	INS	-	-	G													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tgcacgtgggtggcagtcctINSgggggggctgcaagactgct							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	62378801	62378802	-	G	INS	EML3	ENST00000529309	human	ensembl	69_37n	-1	known	frame_shift_ins	c.210_209	p.G71fs	0.982:1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499	17	0	0	10	3	23.08	-	-	-	G	62378802	-	G	62378801	7	5	33	1	0	1	1	0	0	0	0	0	5135	1567	55	0	2560	0	EML3	11	62378801	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09	1361595	62378801	72627715	22	1717										
GLB1L3	0	genome.wustl.edu	37	chr11	134179562	134179562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	attcatcaaatatgagatctCcttcaatgtatatatgttcc	4	8	4	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	134179562	134179562	C	T	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.1004	p.S335F	1.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	61	0	0	46	33	41.77	-	-	-	T	134179562	C	T	134179562	3	4	33	1	0	0	0	0	1	0	0	0	6482	855	30	2	1046	2	GLB1L3	11	134179562	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09	71800761	134179562	826954	23	1718										
GNB3	0	genome.wustl.edu	37	chr12	6952161	6952161	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ctggcctagaggtggtgggaCgagtccagatgcggacgcgg	19	9	0	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	6952161	6952161	C	T	SNP	GNB3	ENST00000229264	human	ensembl	69_37n	1	known	nonsense	c.124	p.R42*	1.000	superfamily_WD40_repeat_dom,pirsf_Guanine_nucleotide-bd_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664	219	0	0	194	22	10.19	-	-	-	T	6952161	C	T	6952161	4	4	33	1	0	0	0	0	0	1	0	0	6571	528	19	1	134	1	GNB3	12	6952161	Nonsense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09		6952161	126899734	24	1719										
WIF1	0	genome.wustl.edu	37	chr12	65460458	65460458	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ccatagaatccaggtgggcaGatgcagaaaccaggagtcac	12	10	1	3			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	65460458	65460458	G	C	SNP	WIF1	ENST00000286574	human	ensembl	69_37n	-1	known	missense	c.693	p.I231M	1.000	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EGF-like,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	127	0	0	150	19	11.24	-	-	-	C	65460458	G	C	65460458	3	2	33	1	0	0	0	0	1	0	0	0	17463	932	33	2	466	2	WIF1	12	65460458	Missense_Mutation	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09	58508297	65460458	68391437	25	1720										
CILP	0	genome.wustl.edu	37	chr15	65491181	65491181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gtttccgtacaccgctggcaGctgcactccttggccacctt	9	16	0	0			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	15	65491181	65491181	G	T	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.1443	p.S481R	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	45	0	0	41	5	10.87	-	-	-	T	65491181	G	T	65491181	3	4	33	1	0	0	0	0	1	0	0	0	3458	962	34	4	2115	4	CILP	15	65491181	Missense_Mutation	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09		65491181	37040211	26	1721										
SPNS1	0	genome.wustl.edu	37	chr16	28986519	28986519	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	cctcagccaggcggatgaccCggacgacgggccagtgcctg	15	15	1	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	28986519	28986519	C	G	SNP	SPNS1	ENST00000311008	human	ensembl	69_37n	1	known	missense	c.47	p.P16R	0.998	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682	36	0	0	34	8	19.05	-	-	-	G	28986519	C	G	28986519	3	3	33	1	0	0	0	0	1	0	0	0	15165	652	23	3	49	3	SPNS1	16	28986519	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09		28986519	61368234	27	1722										
SRCAP	0	genome.wustl.edu	37	chr16	30722123	30722123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	agcgcaacaaacagccttggCatccagatgaagatgatgaa	10	9	0	5			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	30722123	30722123	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.1183	p.H395Y	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	357	0	0	301	54	15.21	-	-	-	T	30722123	C	T	30722123	3	4	33	1	0	0	0	0	1	0	0	0	15226	710	25	4	1209	4	SRCAP	16	30722123	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09	1735604	30722123	59632630	28	1723										
LSMD1	0	genome.wustl.edu	37	chr17	7760674	7760675	+	Frame_Shift_Ins	INS	-	-	C													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tgctgcttgactgcccctcaINSgtcccagaaccagagcccgt							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	7760674	7760675	-	C	INS	LSMD1	ENST00000333775	human	ensembl	69_37n	-1	known	frame_shift_ins	c.68_67	p.L23fs	0.000:0.007	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSMD1	HGNC	ENSG00000183011	8	0	0	10	5	33.33	-	-	-	C	7760675	-	C	7760674	7	5	33	1	0	1	1	0	0	0	0	0	9128	188	7	0	461	0	LSMD1	17	7760674	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09		7760674	73434536	29	1724										
SOCS7	0	genome.wustl.edu	37	chr17	36522192	36522192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gcatttccccggattgctccCatccgagcagctgaatccct	8	16	0	1			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	36522192	36522192	C	T	SNP	SOCS7	ENST00000580660	human	ensembl	69_37n	1	putative	missense	c.178	p.H60Y	0.997	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_start_codon:pseudogene:no_stop_codon	SOCS7	HGNC	ENSG00000174111	133	0	0	87	44	33.59	-	-	-	T	36522192	C	T	36522192	3	4	33	1	0	0	0	0	1	0	0	0	15008	581	21	4	1101	4	SOCS7	17	36522192	Missense_Mutation	SNP	C	TCGA-A2-A0CU-01A-12W-A050-09	28761518	36522192	44673018	30	1725										
MAST1	0	genome.wustl.edu	37	chr19	12978650	12978651	+	Frame_Shift_Ins	INS	-	-	C													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	ggagcccagccgcttcagcgINSccccccaagaggacgaggat							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	19	12978650	12978651	-	C	INS	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	frame_shift_ins	c.2425_2426	p.Q811fs	0.596:0.615	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	27	0	0	27	3	10	-	-	-	C	12978651	-	C	12978650	7	5	33	1	0	1	1	0	0	0	0	0	9395	1087	38	0	2503	0	MAST1	19	12978650	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09		12978650	46150333	31	1726										
ZNF486	0	genome.wustl.edu	37	chr19	20307906	20307906	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	aaaaaaggctgtgaaagtgtGgatgagtgtaagttacacaa	12	3	0	2			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	19	20307906	20307906	G	T	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	silent	c.387	p.V129	0.982	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	63	0	0	99	24	19.51	-	-	-	T	20307906	G	T	20307906	2	4	33	1	0	0	0	0	0	0	0	1	18035	1335	47	4		4	ZNF486	19	20307906	Silent	SNP	G	TCGA-A2-A0CU-01A-12W-A050-09	7329256	20307906	38821077	32	1727										
KIAA2022	0	genome.wustl.edu	37	chrX	73963301	73963301	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tgctcacatcagggaccttgAattgggaaaaatcactgctc							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	73963301	73963301	A	-	DEL	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	frame_shift_del	c.1091	p.F364fs	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	124	0	0	124	23	15.65	-	-	-	-	73963301	A	-	73963301	7	5	33	1	0	1	0	1	0	0	0	0	8321	246	9	0	3467	0	KIAA2022	23	73963301	Frame_Shift_Del	DEL	A	TCGA-A2-A0CU-01A-12W-A050-09		73963301	81307259	33	1728										
SLC25A5	0	genome.wustl.edu	37	chrX	118603962	118603962	+	Frame_Shift_Del	DEL	T	T	-													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	gatgtgggtaaagctggagcTgaaagggaattccgaggcct							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	118603962	118603962	T	-	DEL	SLC25A5	ENST00000317881	human	ensembl	69_37n	1	known	frame_shift_del	c.450	p.E151fs	0.913	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022	54	0	0	50	8	13.79	-	-	-	-	118603962	T	-	118603962	7	5	33	1	0	1	0	1	0	0	0	0	14601	1567	55	0	456	0	SLC25A5	23	118603962	Frame_Shift_Del	DEL	T	TCGA-A2-A0CU-01A-12W-A050-09	44640661	118603962	36666598	34	1729										
MAGEA8	0	genome.wustl.edu	37	chrX	149013310	149013311	+	Frame_Shift_Ins	INS	-	-	G													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	aatccgatgagggttccagcINSagcaatgaagaggaggggcc							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	149013310	149013311	-	G	INS	MAGEA8	ENST00000286482	human	ensembl	69_37n	1	known	frame_shift_ins	c.264_265	p.S88fs	0.001:0.002	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	66	0	0	28	12	30	-	-	-	G	149013311	-	G	149013310	7	5	33	1	0	1	1	0	0	0	0	0	9240	709	25	0	266	0	MAGEA8	23	149013310	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09	30409348	149013310	6257250	35	1730	19	2								
MAGEA8	0	genome.wustl.edu	37	chrX	149013312	149013313	+	Frame_Shift_Ins	INS	-	-	T													0.0294117647058824	1	0.999387256799277	0.588	1.764	0	1	1	0	tccgatgagggttccagcagINScaatgaagaggaggggccaa							TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	149013312	149013313	-	T	INS	MAGEA8	ENST00000286482	human	ensembl	69_37n	1	known	frame_shift_ins	c.266_267	p.N90fs	0.001:0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	67	0	0	29	12	29.27	-	-	-	T	149013313	-	T	149013312	7	5	33	1	0	1	1	0	0	0	0	0	9240	971	34	0	268	0	MAGEA8	23	149013312	Frame_Shift_Ins	INS	-	TCGA-A2-A0CU-01A-12W-A050-09	2	149013312	6257248	36	1731	19	2								
HS2ST1	0	genome.wustl.edu	37	chr1	87549897	87549897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gtgcgctttgtaaagaatatAacttcctggaaagagatgaa	10	5	0	3			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	87549897	87549897	A	G	SNP	HS2ST1	ENST00000370550	human	ensembl	69_37n	1	known	missense	c.384	p.I128M	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS2ST1	HGNC	ENSG00000153936	190	1	0.52	119	19	13.77	-	-	-	G	87549897	A	G	87549897	3	3	34	1	0	0	0	0	1	0	0	0	7413	352	13	5	394	5	HS2ST1	1	87549897	Missense_Mutation	SNP	A	TCGA-A2-A0CV-01A-31D-A10Y-09		87549897	161700724	1	1732										
ABCB10	0	genome.wustl.edu	37	chr1	229683401	229683401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gaaagcaacctcctgcctcaGaatggaggagaataatgaag	11	8	1	3			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	229683401	229683401	G	C	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.766	p.L256V	0.817	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	132	0	0	119	19	13.77	-	-	-	C	229683401	G	C	229683401	3	2	34	1	0	0	0	0	1	0	0	0	41	933	33	2	1494	2	ABCB10	1	229683401	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09	142133504	229683401	19567220	2	1733										
ROBO1	0	genome.wustl.edu	37	chr3	78719385	78719385	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	cacagctgaggacgaaagtgCcatccacggctacagtctga	11	12	1	2			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	78719385	78719385	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.1409	p.G470A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	46	0	0	59	12	16.9	-	-	-	G	78719385	C	G	78719385	3	3	34	1	0	0	0	0	1	0	0	0	13599	739	26	4	3630	4	ROBO1	3	78719385	Missense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09		78719385	119303045	3	1734										
GOLGB1	0	genome.wustl.edu	37	chr3	121415242	121415242	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	tggctgctttccaatttctgCtgcaggctttcggcatggac	11	11	1	0			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	121415242	121415242	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.4113	p.Q1371H	0.961	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	166	0	0	151	34	18.28	-	-	-	A	121415242	C	A	121415242	3	1	34	1	0	0	0	0	1	0	0	0	6614	796	28	4	5706	4	GOLGB1	3	121415242	Missense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09	42695857	121415242	76607188	4	1735										
LRBA	0	genome.wustl.edu	37	chr4	151223818	151223818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	cactgcattttccattccaaTaccacagcaaaagagttgca	5	12	0	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	4	151223818	151223818	T	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.8009	p.Y2670C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	191	0	0	92	18	16.36	-	-	-	C	151223818	T	C	151223818	3	2	34	1	0	0	0	0	1	0	0	0	8997	1406	49	5	602	5	LRBA	4	151223818	Missense_Mutation	SNP	T	TCGA-A2-A0CV-01A-31D-A10Y-09		151223818	39930458	5	1736										
CMYA5	0	genome.wustl.edu	37	chr5	79032395	79032395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	aaaaatcagaagccatgctcGcagaggctcacccagaaatc	8	12	2	3			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	79032395	79032395	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.7807	p.A2603T	0.007	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	120	0	0	85	14	14.14	-	-	-	A	79032395	G	A	79032395	3	1	34	1	0	0	0	0	1	0	0	0	3620	1087	38	1	7813	1	CMYA5	5	79032395	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		79032395	101882865	6	1737										
PCDHA12	0	genome.wustl.edu	37	chr5	140256806	140256806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gttagcgagttggtaccgcgGtcggtgggtgcgggccacgt	19	9	0	0			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	140256806	140256806	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.1749	p.R583	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	78	0	0	114	28	19.72	-	-	-	A	140256806	G	A	140256806	2	1	34	1	0	0	0	0	0	0	0	1	11595	1248	44	4		4	PCDHA12	5	140256806	Silent	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09	61224411	140256806	40658454	7	1738										
TTK	0	genome.wustl.edu	37	chr6	80746264	80746264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gctaaagctaattgattttgGgattgcaaaccaaatgcaac	8	7	0	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	6	80746264	80746264	G	A	SNP	TTK	ENST00000369798	human	ensembl	69_37n	1	known	missense	c.1997	p.G666E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTK	HGNC	ENSG00000112742	337	0	0	178	33	15.64	-	-	-	A	80746264	G	A	80746264	3	1	34	1	0	0	0	0	1	0	0	0	16817	1232	43	4	2059	4	TTK	6	80746264	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		80746264	90368803	8	1739										
FAM20C	0	genome.wustl.edu	37	chr7	299785	299785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	tggccgagtctctgcgggggGaccaggtggcacccgtgctg	18	12	1	0			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	7	299785	299785	G	C	SNP	FAM20C	ENST00000313766	human	ensembl	69_37n	1	known	missense	c.1594	p.D532H	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	13	0	0	22	8	26.67	-	-	-	C	299785	G	C	299785	3	2	34	1	0	0	0	0	1	0	0	0	5581	1174	41	2		2	FAM20C	7	299785	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		299785	158838878	9	1740										
EIF2C2	0	genome.wustl.edu	37	chr8	141561427	141561427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	atggacttccgtgcactggcGctggggggcgaagcacgcaa	16	11	0	0			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	8	141561427	141561427	G	A	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.1378	p.R460C	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	37	0	0	40	7	14.89	-	-	-	A	141561427	G	A	141561427	3	1	34	1	0	0	0	0	1	0	0	0	5041	1087	38	1	1237	1	EIF2C2	8	141561427	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		141561427	4802595	10	1741										
GNE	0	genome.wustl.edu	37	chr9	36217480	36217480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	cggaggacaaggcctgctggCgaatgacgtctttgacaatg	14	9	1	2			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	36217480	36217480	C	T	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.2144	p.R715H	1.000	NULL	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	118	0	0	111	22	16.54	-	-	-	T	36217480	C	T	36217480	3	4	34	1	0	0	0	0	1	0	0	0	6574	768	27	1	121	1	GNE	9	36217480	Missense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09		36217480	104995951	11	1742										
CARD9	0	genome.wustl.edu	37	chr9	139266359	139266359	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	acactgacccactttccgttTgcggatgaccaggttggggt	12	11	0	2			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	139266359	139266359	T	C	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	missense	c.172	p.K58E	1.000	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	30	0	0	46	6	11.54	-	-	-	C	139266359	T	C	139266359	3	2	34	1	0	0	0	0	1	0	0	0	2677	1821	63	5	1539	5	CARD9	9	139266359	Missense_Mutation	SNP	T	TCGA-A2-A0CV-01A-31D-A10Y-09	103048879	139266359	1947072	12	1743										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	94	0	0	72	39	35.14	-	-	-	-	8111434	CA	-	8111433	8	5	34	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-A2-A0CV-01A-31D-A10Y-09		8111433	127423314	13	1744										
AHNAK	0	genome.wustl.edu	37	chr11	62295540	62295540	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gtccacatcaggcatggagaTcttgggggccttgaagtgca	14	9	2	2			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	11	62295540	62295540	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.6349	p.I2117V	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	197	0	0	287	55	16.08	-	-	-	C	62295540	T	C	62295540	3	2	34	1	0	0	0	0	1	0	0	0	414	1435	50	5	11443	5	AHNAK	11	62295540	Missense_Mutation	SNP	T	TCGA-A2-A0CV-01A-31D-A10Y-09		62295540	72710976	14	1745										
TUBA1C	0	genome.wustl.edu	37	chr12	49666122	49666122	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gggttcacctcgctgctcatGgaacgtctctcagttgatta	10	11	4	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	49666122	49666122	G	T	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	1	known	missense	c.462	p.M154I	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	206	1	0.48	139	31	18.24	-	-	-	T	49666122	G	T	49666122	3	4	34	1	0	0	0	0	1	0	0	0	16842	1348	47	4	476	4	TUBA1C	12	49666122	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		49666122	84185773	15	1746										
TMEM132D	0	genome.wustl.edu	37	chr12	129569107	129569107	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	agctcggtgtcggagacctcGatctgcagcggaagccgggg	17	11	1	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	129569107	129569107	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	silent	c.1584	p.I528	0.004	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	79	0	0	73	15	17.05	-	-	-	A	129569107	G	A	129569107	2	1	34	1	0	0	0	0	0	0	0	1	16142	1048	37	1		1	TMEM132D	12	129569107	Silent	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09	79902985	129569107	4282788	16	1747										
FAM179B	0	genome.wustl.edu	37	chr14	45431733	45431733	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	ccccagagaccgatgatagtCgagttgggggcattatgaga	14	8	0	3			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	45431733	45431733	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	nonsense	c.109	p.R37*	0.185	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	48	0	0	33	9	21.43	-	-	-	T	45431733	C	T	45431733	4	4	34	1	0	0	0	0	0	1	0	0	5546	876	31	1	111	1	FAM179B	14	45431733	Nonsense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09		45431733	61917807	17	1748										
SYT16	0	genome.wustl.edu	37	chr14	62536500	62536500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gccgttcgttgttgacacacGgagaagatggcacagaagta	13	8	0	4			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	62536500	62536500	G	A	SNP	SYT16	ENST00000446982	human	ensembl	69_37n	1	known	missense	c.703	p.G235R	0.023	NULL	NULL	-	no_errors	SYT16	HGNC	ENSG00000139973	133	0	0	117	19	13.97	-	-	-	A	62536500	G	A	62536500	3	1	34	1	0	0	0	0	1	0	0	0	15564	1117	39	1	709	1	SYT16	14	62536500	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09	17104767	62536500	44813040	18	1749										
VWA3A	0	genome.wustl.edu	37	chr16	22143005	22143005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gacaaagacaaacaccaatcGcagggaatctacctcttcac	6	13	3	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	16	22143005	22143005	G	A	SNP	VWA3A	ENST00000299840	human	ensembl	69_37n	1	known	missense	c.655	p.A219T	0.030	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3A	HGNC	ENSG00000175267	55	0	0	64	14	17.95	-	-	-	A	22143005	G	A	22143005	3	1	34	1	0	0	0	0	1	0	0	0	17337	1074	38	1	1901	1	VWA3A	16	22143005	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		22143005	68211748	19	1750										
SYT5	0	genome.wustl.edu	37	chr19	55690340	55690340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	gtcttgctcacctgggccgtGgctgatgcgactggagtcgg	16	11	2	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	19	55690340	55690340	G	A	SNP	SYT5	ENST00000354308	human	ensembl	69_37n	-1	known	missense	c.70	p.H24Y	0.568	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990	43	0	0	34	6	15	-	-	-	A	55690340	G	A	55690340	3	1	34	1	0	0	0	0	1	0	0	0	15569	1348	47	4	1122	4	SYT5	19	55690340	Missense_Mutation	SNP	G	TCGA-A2-A0CV-01A-31D-A10Y-09		55690340	3438643	20	1751										
SNTA1	0	genome.wustl.edu	37	chr20	31996318	31996318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	tgcatccggcgacttctaggCcaacagcccgaggcgggtga	14	13	1	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	20	31996318	31996318	C	A	SNP	SNTA1	ENST00000217381	human	ensembl	69_37n	-1	known	missense	c.1513	p.A505S	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTA1	HGNC	ENSG00000101400	109	0	0	84	19	18.45	-	-	-	A	31996318	C	A	31996318	3	1	34	1	0	0	0	0	1	0	0	0	14960	739	26	4	8	4	SNTA1	20	31996318	Missense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09		31996318	31029202	21	1752										
CPT1B	0	genome.wustl.edu	37	chr22	51008742	51008742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.993476777398216	0.65521978021978	3.05769230769231	0	1	1	0	agggccaaagccacctccagCgcccaggtgattggggtgct	14	13	0	1			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	22	51008742	51008742	C	T	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	missense	c.2122	p.A708T	0.801	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	66	0	0	36	14	28	-	-	-	T	51008742	C	T	51008742	3	4	34	1	0	0	0	0	1	0	0	0	3862	768	27	1	208	1	CPT1B	22	51008742	Missense_Mutation	SNP	C	TCGA-A2-A0CV-01A-31D-A10Y-09		51008742	295824	22	1753										
HSPG2	0	genome.wustl.edu	37	chr1	22211365	22211365	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctggtctgactccttcacatCacggatgatcagtgtgccac	9	13	4	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	22211365	22211365	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.1402	p.D468N	0.980	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	71	0	0	13	12	48	-	-	-	T	22211365	C	T	22211365	3	4	35	1	0	0	0	0	1	0	0	0	7484	826	29	2	12117	2	HSPG2	1	22211365	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		22211365	227039256	1	1754										
ZNF642	0	genome.wustl.edu	37	chr1	40961283	40961283	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tcaacatttgaggactcattCtggagagaaaccttttactt	7	8	3	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	40961283	40961283	C	T	SNP	ZNF642	ENST00000372705	human	ensembl	69_37n	1	known	missense	c.1133	p.S378F	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF642	HGNC	ENSG00000187815	111	0	0	42	14	25	-	-	-	T	40961283	C	T	40961283	3	4	35	1	0	0	0	0	1	0	0	0	18154	913	32	2	1151	2	ZNF642	1	40961283	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	18749918	40961283	208289338	2	1755										
GNAT2	0	genome.wustl.edu	37	chr1	110148929	110148929	+	Splice_Site	DEL	C	C	-													0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cctagggaaccatgcacttaCctgaaattcaagtctttgac							TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	110148929	110148929	C	-	DEL	GNAT2	ENST00000351050	human	ensembl	69_37n	-1	known	splice_site_del	c.590+1	e5+1	1.000	-	-	-	no_errors	GNAT2	HGNC	ENSG00000134183	209	0	0	146	24	14.12	-	-	-	-	110148929	C	-	110148929	8	5	35	1	0	1	0	1	0	0	1	0	6564	521	18	0	489	0	GNAT2	1	110148929	Splice_Site	DEL	C	TCGA-A2-A0CW-01A-21D-A10Y-09	69187646	110148929	139101692	3	1756										
SF3B4	0	genome.wustl.edu	37	chr1	149895759	149895759	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gagatccgaatggaggccctCgggggggcatgcccattgga	17	10	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	149895759	149895759	C	A	SNP	SF3B4	ENST00000271628	human	ensembl	69_37n	-1	known	missense	c.1061	p.R354L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	75	0	0	33	16	32	-	-	-	A	149895759	C	A	149895759	3	1	35	1	0	0	0	0	1	0	0	0	14241	884	31	3	221	3	SF3B4	1	149895759	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	39746830	149895759	99354862	4	1757										
TSTD1	0	genome.wustl.edu	37	chr1	161008416	161008416	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cacgtcgaagagccgggcccGtccggaggctaggagtgaac	16	12	0	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	161008416	161008416	G	T	SNP	TSTD1	ENST00000368023	human	ensembl	69_37n	-1	known	silent	c.79	p.R27	0.929	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD1	HGNC	ENSG00000215845	37	0	0	51	16	23.53	-	-	-	T	161008416	G	T	161008416	2	4	35	1	0	0	0	0	0	0	0	1	16771	1144	40	3		3	TSTD1	1	161008416	Silent	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	11112657	161008416	88242205	5	1758										
USH2A	0	genome.wustl.edu	37	chr1	216348792	216348792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gattgttgtgctgttgattcCtttaaccagaggtggcctca	11	8	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	216348792	216348792	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.4429	p.G1477R	0.120	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	335	0	0	191	84	30.55	-	-	-	T	216348792	C	T	216348792	3	4	35	1	0	0	0	0	1	0	0	0	17133	690	24	4	11401	4	USH2A	1	216348792	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	55340376	216348792	32901829	6	1759										
RYR2	0	genome.wustl.edu	37	chr1	237711763	237711763	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	aagtggatacaagcctgcccCtatggacctgagctttatca	9	11	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	237711763	237711763	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2933	p.P978H	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	188	0	0	111	42	27.45	-	-	-	A	237711763	C	A	237711763	3	1	35	1	0	0	0	0	1	0	0	0	13855	681	24	4	3041	4	RYR2	1	237711763	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	21362971	237711763	11538858	7	1760										
AKT3	0	genome.wustl.edu	37	chr1	243727150	243727150	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gtccagcattagattctccaActgtgtattaagaaaaatga	7	7	1	3			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	243727150	243727150	A	G	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	silent	c.820	p.L274	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	252	0	0	231	55	19.23	-	-	-	G	243727150	A	G	243727150	2	3	35	1	0	0	0	0	0	0	0	1	481	57	2	5		5	AKT3	1	243727150	Silent	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09	6015387	243727150	5523471	8	1761										
RTN4	0	genome.wustl.edu	37	chr2	55214629	55214629	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gttttccagacatctcacctGaatgggtggccttcatctga	9	11	3	3			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	2	55214629	55214629	G	A	SNP	RTN4	ENST00000438462	human	ensembl	69_37n	-1	putative	nonsense	c.289	p.Q97*	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RTN4	HGNC	ENSG00000115310	304	0	0	85	48	36.09	-	-	-	A	55214629	G	A	55214629	4	1	35	1	0	0	0	0	0	1	0	0	13814	1281	45	2	383	2	RTN4	2	55214629	Nonsense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		55214629	187984744	9	1762										
LRP2	0	genome.wustl.edu	37	chr2	170042184	170042184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	atgccacaacattgtccagtCcttccaagatgagggagtaa	9	10	0	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	2	170042184	170042184	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.9674	p.G3225E	1.000	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	345	0	0	170	90	34.62	-	-	-	T	170042184	C	T	170042184	3	4	35	1	0	0	0	0	1	0	0	0	9022	855	30	2	4413	2	LRP2	2	170042184	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	114827555	170042184	73157189	10	1763										
PRRT3	0	genome.wustl.edu	37	chr3	9990556	9990556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctccacagctcctctcacccGctggggggagatggggtctg	14	14	2	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	9990556	9990556	G	A	SNP	PRRT3	ENST00000295984	human	ensembl	69_37n	-1	known	missense	c.1057	p.R353W	1.000	NULL	NULL	-	no_errors	PRRT3	HGNC	ENSG00000163704	75	0	0	44	78	63.41	-	-	-	A	9990556	G	A	9990556	3	1	35	1	0	0	0	0	1	0	0	0	12691	1086	38	1	1896	1	PRRT3	3	9990556	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		9990556	188031874	11	1764										
ARHGAP31	0	genome.wustl.edu	37	chr3	119133553	119133553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctctcccaccctgaaagacgCgcacaaggcccaggtacagg	10	16	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	119133553	119133553	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.2777	p.A926V	0.890	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	58	0	0	57	22	27.85	-	-	-	T	119133553	C	T	119133553	3	4	35	1	0	0	0	0	1	0	0	0	882	768	27	1	2823	1	ARHGAP31	3	119133553	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	109142997	119133553	78888877	12	1765										
PIK3CA	0	genome.wustl.edu	37	chr3	178952090	178952090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	aaatgaatgatgcacatcatGgtggctggacaacaaaaatg	10	6	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	178952090	178952090	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3145	p.G1049R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	152	0	0	88	23	20.72	-	-	-	C	178952090	G	C	178952090	3	2	35	1	0	0	0	0	1	0	0	0	11987	1348	47	4	3223	4	PIK3CA	3	178952090	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	59818537	178952090	19070340	13	1766										
SCFD2	0	genome.wustl.edu	37	chr4	54231342	54231342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cagtcttcttcctgttctttGcaggggcataattggccaga	10	10	3	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	4	54231342	54231342	G	C	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	missense	c.767	p.A256G	1.000	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	221	0	0	66	50	42.74	-	-	-	C	54231342	G	C	54231342	3	2	35	1	0	0	0	0	1	0	0	0	13977	1319	46	4	1323	4	SCFD2	4	54231342	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		54231342	136922934	14	1767										
GRID2	0	genome.wustl.edu	37	chr4	94377069	94377069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	attacaaatgggatcaatgaCgtctactactctctacaact	5	10	3	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	4	94377069	94377069	C	T	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.1802	p.T601M	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	470	0	0	134	96	41.74	-	-	-	T	94377069	C	T	94377069	3	4	35	1	0	0	0	0	1	0	0	0	6823	536	19	1	1844	1	GRID2	4	94377069	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	40145727	94377069	96777207	15	1768										
DOPEY1	0	genome.wustl.edu	37	chr6	83877655	83877655	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ttgctgctcaccatctgcacCgtgcgcagtatggagcagct	11	13	2	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	6	83877655	83877655	C	G	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	silent	c.7167	p.T2389	0.987	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	74	0	0	26	18	40.91	-	-	-	G	83877655	C	G	83877655	2	3	35	1	0	0	0	0	0	0	0	1	4742	639	23	3		3	DOPEY1	6	83877655	Silent	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		83877655	87237412	16	1769										
CPSF4	0	genome.wustl.edu	37	chr7	99054135	99054135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ggacagtgacagcagctggaGccagctccgagcagcccggg	16	13	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	7	99054135	99054135	G	T	SNP	CPSF4	ENST00000452047	human	ensembl	69_37n	1	putative	missense	c.554	p.S185I	0.974	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_start_codon:no_stop_codon	CPSF4	HGNC	ENSG00000160917	129	1	0.77	44	27	38.03	-	-	-	T	99054135	G	T	99054135	3	4	35	1	0	0	0	0	1	0	0	0	3858	986	34	4		4	CPSF4	7	99054135	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		99054135	60084528	17	1770										
ZNF705D	0	genome.wustl.edu	37	chr8	11970495	11970495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tattcaatcctttaaccttcGaagacatgagagaactcacc	5	11	2	3			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	11970495	11970495	G	A	SNP	ZNF705D	ENST00000400085	human	ensembl	69_37n	1	known	missense	c.731	p.R244Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705D	HGNC	ENSG00000215343	39	0	0	12	5	29.41	-	-	-	A	11970495	G	A	11970495	3	1	35	1	0	0	0	0	1	0	0	0	18205	1058	37	1	749	1	ZNF705D	8	11970495	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		11970495	134393527	18	1771										
RP1	0	genome.wustl.edu	37	chr8	55540804	55540804	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ccaggctcaataaccaacagCatgacatcaagtgaaagaaa	7	10	2	3			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	55540804	55540804	C	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.4362	p.S1454R	0.848	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	54	0	0	26	19	42.22	-	-	-	A	55540804	C	A	55540804	3	1	35	1	0	0	0	0	1	0	0	0	13618	709	25	4	4372	4	RP1	8	55540804	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	43570309	55540804	90823218	19	1772										
EIF2C2	0	genome.wustl.edu	37	chr8	141566309	141566309	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gatcgggcgccgacctagcaGtcgctctgatcatggttgag	14	11	2	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	141566309	141566309	G	C	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.1103	p.T368S	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	159	0	0	129	38	22.75	-	-	-	C	141566309	G	C	141566309	3	2	35	1	0	0	0	0	1	0	0	0	5041	1029	36	4	1520	4	EIF2C2	8	141566309	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	86025505	141566309	4797713	20	1773										
SVEP1	0	genome.wustl.edu	37	chr9	113192280	113192280	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	atagccggtttaccacatgaAacagcttaacaaaggaaaaa	7	8	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	9	113192280	113192280	A	C	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.5535	p.V1845	0.994	superfamily_Complement_control_module,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	168	0	0	101	49	32.67	-	-	-	C	113192280	A	C	113192280	2	2	35	1	0	0	0	0	0	0	0	1	15511	1	1	5		5	SVEP1	9	113192280	Silent	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09		113192280	28021151	21	1774										
AGAP7	0	genome.wustl.edu	37	chr10	51465579	51465579	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ataatcacctaagcttgaatAataggtgagcacaccattgg	8	8	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	10	51465579	51465579	A	G	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.877	p.Y293H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	84	0	0	50	33	39.76	-	-	-	G	51465579	A	G	51465579	3	3	35	1	0	0	0	0	1	0	0	0	373	362	13	5	1118	5	AGAP7	10	51465579	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09		51465579	84069168	22	1775										
ATHL1	0	genome.wustl.edu	37	chr11	289917	289917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	caacgcatacctgggcacacGagtgtttcacgacacgctgc	10	14	1	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	289917	289917	G	A	SNP	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	missense	c.101	p.R34Q	0.926	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	158	0	0	36	16	30.77	-	-	-	A	289917	G	A	289917	3	1	35	1	0	0	0	0	1	0	0	0	1108	1058	37	1	103	1	ATHL1	11	289917	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		289917	134716599	23	1776										
DRD4	0	genome.wustl.edu	37	chr11	640571	640571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tcaacgccgagttccgcaacGtcttccgcaaggccctgcgt	10	16	2	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	640571	640571	G	A	SNP	DRD4	ENST00000176183	human	ensembl	69_37n	1	known	missense	c.1228	p.V410I	0.792	prints_Dopamine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_D4_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD4	HGNC	ENSG00000069696	169	0	0	24	21	46.67	-	-	-	A	640571	G	A	640571	3	1	35	1	0	0	0	0	1	0	0	0	4794	1145	40	1	1242	1	DRD4	11	640571	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	350654	640571	134365945	24	1777										
OR2D2	0	genome.wustl.edu	37	chr11	6913663	6913663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	acgataaatagcagctgctcGgtgtgtggcccatcagagag	13	9	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	6913663	6913663	G	A	SNP	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	silent	c.69	p.T23	0.019	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	161	0	0	97	46	32.17	-	-	-	A	6913663	G	A	6913663	2	1	35	1	0	0	0	0	0	0	0	1	11067	1103	39	1		1	OR2D2	11	6913663	Silent	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	6273092	6913663	128092853	25	1778										
SLC6A13	0	genome.wustl.edu	37	chr12	352926	352926	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tagtgctgtctccagaaggaAgacaggaatgccacaggtaa	12	8	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	352926	352926	A	T	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	missense	c.256	p.F86I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	242	0	0	67	32	32.32	-	-	-	T	352926	A	T	352926	3	4	35	1	0	0	0	0	1	0	0	0	14765	72	3	5	1604	5	SLC6A13	12	352926	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09		352926	133498969	26	1779										
C12orf57	0	genome.wustl.edu	37	chr12	7053746	7053746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tgggtaagatgctgcaattcGtgctgcccgtggccacgcag	14	11	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	7053746	7053746	G	A	SNP	C12orf57	ENST00000229281	human	ensembl	69_37n	1	known	missense	c.160	p.V54M	1.000	NULL	NULL	-	no_errors	C12orf57	HGNC	ENSG00000111678	165	0	0	31	17	35.42	-	-	-	A	7053746	G	A	7053746	3	1	35	1	0	0	0	0	1	0	0	0	1713	1145	40	1	166	1	C12orf57	12	7053746	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	6700820	7053746	126798149	27	1780										
CSRNP2	0	genome.wustl.edu	37	chr12	51457800	51457800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ccacgagtgaggtaacagggAgagagaagacattcagatcc	13	8	1	5			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	51457800	51457800	A	G	SNP	CSRNP2	ENST00000228515	human	ensembl	69_37n	-1	known	missense	c.1361	p.L454P	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925	131	0	0	71	36	33.64	-	-	-	G	51457800	A	G	51457800	3	3	35	1	0	0	0	0	1	0	0	0	3996	304	11	5	274	5	CSRNP2	12	51457800	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09	44404054	51457800	82394095	28	1781										
KIAA1199	0	genome.wustl.edu	37	chr15	81229087	81229087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	atgacttccccagccaccctCtttacctggagggggcgctc	10	16	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	15	81229087	81229087	C	G	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	missense	c.3082	p.L1028V	0.757	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	169	0	0	81	49	37.69	-	-	-	G	81229087	C	G	81229087	3	3	35	1	0	0	0	0	1	0	0	0	8265	913	32	2	3168	2	KIAA1199	15	81229087	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		81229087	21302305	29	1782										
CNOT1	0	genome.wustl.edu	37	chr16	58589801	58589801	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gtttgcctctggccacacctGagacaagtccgctgttggaa	11	12	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	58589801	58589801	G	A	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	nonsense	c.2491	p.Q831*	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	239	0	0	99	55	35.71	-	-	-	A	58589801	G	A	58589801	4	1	35	1	0	0	0	0	0	1	0	0	3647	1299	45	2	4981	2	CNOT1	16	58589801	Nonsense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		58589801	31764952	30	1783										
WWP2	0	genome.wustl.edu	37	chr16	69971470	69971470	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gctgatgctgtgcggcatgcAggagatagacatgagcgact	15	8	0	4			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	69971470	69971470	A	T	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.2258	p.Q753L	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	140	0	0	51	31	37.8	-	-	-	T	69971470	A	T	69971470	3	4	35	1	0	0	0	0	1	0	0	0	17513	188	7	5	2340	5	WWP2	16	69971470	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09	11381669	69971470	20383283	31	1784										
ZNF821	0	genome.wustl.edu	37	chr16	71893986	71893986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cagaagctggctgtccaactCcaccccacttacaggcagct	8	16	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	71893986	71893986	C	G	SNP	ZNF821	ENST00000425432	human	ensembl	69_37n	-1	known	missense	c.1174	p.E392Q	0.991	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984	119	0	0	39	16	29.09	-	-	-	G	71893986	C	G	71893986	3	3	35	1	0	0	0	0	1	0	0	0	18271	864	30	2	68	2	ZNF821	16	71893986	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	1922516	71893986	18460767	32	1785										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	265	0	0	72	84	53.85	-	-	-	A	7578263	G	A	7578263	4	1	35	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09		7578263	73616947	33	1786										
MFSD6L	0	genome.wustl.edu	37	chr17	8702017	8702017	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cctctgcagtcctcttggctGggtggctggaggcagactct	14	12	3	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	8702017	8702017	G	C	SNP	MFSD6L	ENST00000329805	human	ensembl	69_37n	-1	known	missense	c.422	p.P141R	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156	151	0	0	29	40	57.14	-	-	-	C	8702017	G	C	8702017	3	2	35	1	0	0	0	0	1	0	0	0	9607	1348	47	4	1342	4	MFSD6L	17	8702017	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	1123754	8702017	72493193	34	1787										
MYO1D	0	genome.wustl.edu	37	chr17	31087405	31087405	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gtttctcattgcagtaattgAtacagaattgttcaaaacta	6	6	2	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	31087405	31087405	A	T	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	missense	c.1199	p.I400N	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	195	0	0	97	73	42.94	-	-	-	T	31087405	A	T	31087405	3	4	35	1	0	0	0	0	1	0	0	0	10143	333	12	5	1873	5	MYO1D	17	31087405	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09	22385388	31087405	50107805	35	1788										
CDK12	0	genome.wustl.edu	37	chr17	37681111	37681111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctcagcctgctcctggcaagGtggagtctggggctggggat	17	10	2	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	37681111	37681111	G	T	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.3280	p.V1094L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	98	0	0	31	30	49.18	-	-	-	T	37681111	G	T	37681111	3	4	35	1	0	0	0	0	1	0	0	0	3157	1261	44	4	3326	4	CDK12	17	37681111	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	6593706	37681111	43514099	36	1789										
EZH1	0	genome.wustl.edu	37	chr17	40856673	40856673	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	atttgtcatagacctttccgCgtcgatcagcctcatcctga	7	13	3	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	40856673	40856673	C	G	SNP	EZH1	ENST00000428826	human	ensembl	69_37n	-1	known	missense	c.1964	p.R655P	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799	189	0	0	39	40	50.63	-	-	-	G	40856673	C	G	40856673	3	3	35	1	0	0	0	0	1	0	0	0	5370	768	27	3	295	3	EZH1	17	40856673	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	3175562	40856673	40338537	37	1790										
RNF213	0	genome.wustl.edu	37	chr17	78360175	78360175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctctcgtcagctacttgattCgcctacacaatgaaattgtc	6	12	2	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	78360175	78360175	C	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.14665	p.R4889C	0.001	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	185	0	0	62	43	40.95	-	-	-	T	78360175	C	T	78360175	3	4	35	1	0	0	0	0	1	0	0	0	13563	884	31	1	15226	1	RNF213	17	78360175	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	37503502	78360175	2835035	38	1791										
MAFG	0	genome.wustl.edu	37	chr17	79880760	79880760	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	tccttctgcgtcacccgcttCacgcggcagctggcagcgta	11	16	3	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	79880760	79880760	C	T	SNP	MAFG	ENST00000357736	human	ensembl	69_37n	-1	known	silent	c.210	p.V70	0.998	pfam_bZIP_Maf,smart_bZIP,pfscan_bZIP	pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAFG	HGNC	ENSG00000197063	90	0	0	33	12	26.67	-	-	-	T	79880760	C	T	79880760	2	4	35	1	0	0	0	0	0	0	0	1	9227	813	29	2		2	MAFG	17	79880760	Silent	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	1520585	79880760	1314450	39	1792										
BCAT2	0	genome.wustl.edu	37	chr19	49303011	49303011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	caggagggagaccggggtcaCggagcctccagggaagtagg	19	9	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	49303011	49303011	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	missense	c.616	p.V206M	0.016	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	41	0	0	13	14	51.85	-	-	-	T	49303011	C	T	49303011	3	4	35	1	0	0	0	0	1	0	0	0	1359	536	19	1	586	1	BCAT2	19	49303011	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		49303011	9825972	40	1793										
VRK3	0	genome.wustl.edu	37	chr19	50482398	50482398	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gtcatatggagacacacgcaGatcctgcagcaaagcttcta	9	11	2	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	50482398	50482398	G	T	SNP	VRK3	ENST00000316763	human	ensembl	69_37n	-1	known	missense	c.1378	p.L460M	0.003	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK3	HGNC	ENSG00000105053	310	1	0.32	113	71	38.59	-	-	-	T	50482398	G	T	50482398	3	4	35	1	0	0	0	0	1	0	0	0	17318	933	33	2	50	2	VRK3	19	50482398	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	1179387	50482398	8646585	41	1794										
ZNF480	0	genome.wustl.edu	37	chr19	52824933	52824933	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctgaactggagctatttccaGatgaaagggtaataaatgga	11	5	0	3			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	52824933	52824933	G	C	SNP	ZNF480	ENST00000468240	human	ensembl	69_37n	1	known	missense	c.430	p.D144H	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464	98	0	0	71	41	36.61	-	-	-	C	52824933	G	C	52824933	3	2	35	1	0	0	0	0	1	0	0	0	18031	942	33	2	444	2	ZNF480	19	52824933	Missense_Mutation	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	2342535	52824933	6304050	42	1795										
ZNF160	0	genome.wustl.edu	37	chr19	53571578	53571578	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	agtaaagaccttgccacattCattacatttgtaaggttttt	6	7	1	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	53571578	53571578	C	T	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.2209	p.E737K	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	266	0	0	56	140	71.43	-	-	-	T	53571578	C	T	53571578	3	4	35	1	0	0	0	0	1	0	0	0	17835	835	29	2	251	2	ZNF160	19	53571578	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	746645	53571578	5557405	43	1796										
ZNF160	0	genome.wustl.edu	37	chr19	53573463	53573463	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gtgtggaatactgcttctgtActgctcttctcttttggtag	10	8	3	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	53573463	53573463	A	C	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.324	p.S108R	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	263	0	0	63	178	73.86	-	-	-	C	53573463	A	C	53573463	3	2	35	1	0	0	0	0	1	0	0	0	17835	388	14	5	2136	5	ZNF160	19	53573463	Missense_Mutation	SNP	A	TCGA-A2-A0CW-01A-21D-A10Y-09	1885	53573463	5555520	44	1797										
JPH2	0	genome.wustl.edu	37	chr20	42788508	42788508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gcggaggccactggagcgttCgctcacgccgaagcccgagc	15	15	1	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	20	42788508	42788508	C	T	SNP	JPH2	ENST00000372980	human	ensembl	69_37n	-1	known	missense	c.919	p.E307K	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596	164	0	0	107	12	10.08	-	-	-	T	42788508	C	T	42788508	3	4	35	1	0	0	0	0	1	0	0	0	8015	893	31	1	1187	1	JPH2	20	42788508	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		42788508	20237012	45	1798										
ZNF335	0	genome.wustl.edu	37	chr20	44596988	44596988	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ccgccatcctcagcactggtCacagtgatgcagtctgggca	11	14	3	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	20	44596988	44596988	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	silent	c.456	p.V152	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	132	0	0	133	30	18.4	-	-	-	T	44596988	C	T	44596988	2	4	35	1	0	0	0	0	0	0	0	1	17948	813	29	2		2	ZNF335	20	44596988	Silent	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	1808480	44596988	18428532	46	1799										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	C													0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	36252994	36252995	-	C	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	304	0	0	286	119	29.38	-	-	-	C	36252995	-	C	36252994	7	5	35	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-A2-A0CW-01A-21D-A10Y-09		36252994	11876901	47	1800										
BRWD1	0	genome.wustl.edu	37	chr21	40570751	40570751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	aatctaaatcagtttcacatCcatgatctgaggaacactgg	7	9	4	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40570751	40570751	C	T	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5591	p.G1864E	0.010	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	151	0	0	245	174	41.53	-	-	-	T	40570751	C	T	40570751	3	4	35	1	0	0	0	0	1	0	0	0	1533	855	30	2	1622	2	BRWD1	21	40570751	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	4317757	40570751	7559144	48	1801			1	5		3	3	808	C		9.524012e-07
BRWD1	0	genome.wustl.edu	37	chr21	40570851	40570851	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	acatttcccatcttctctatCttgctcttcagattcagagt	4	12	6	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40570851	40570851	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5491	p.D1831H	0.001	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	184	0	0	330	193	36.9	-	-	-	G	40570851	C	G	40570851	3	3	35	1	0	0	0	0	1	0	0	0	1533	913	32	2	1722	2	BRWD1	21	40570851	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	100	40570851	7559044	49	1802			1	5		3	3	808	C		9.524012e-07
BRWD1	0	genome.wustl.edu	37	chr21	40571558	40571558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctctctttcgagtggcttttCtgccacatccatttgctaat	6	12	2	0			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40571558	40571558	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.4784	p.R1595T	0.960	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	41	0	0	67	50	42.74	-	-	-	G	40571558	C	G	40571558	3	3	35	1	0	0	0	0	1	0	0	0	1533	913	32	2	2429	2	BRWD1	21	40571558	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	707	40571558	7558337	50	1803			1	5		3	3	808	C		9.524012e-07
RPS6KA6	0	genome.wustl.edu	37	chrX	83411145	83411145	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	ctgtgcaggatctgctttctCatagccttccttaacatgat	7	11	2	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	83411145	83411145	C	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	missense	c.196	p.E66K	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	216	0	0	86	61	41.5	-	-	-	T	83411145	C	T	83411145	3	4	35	1	0	0	0	0	1	0	0	0	13741	835	29	2	2121	2	RPS6KA6	23	83411145	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09		83411145	71859415	51	1804										
TCEAL2	0	genome.wustl.edu	37	chrX	101382274	101382274	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	agcaatataaggaagccataCatgatatgaatttcagcaat	7	6	1	2			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	101382274	101382274	C	A	SNP	TCEAL2	ENST00000329035	human	ensembl	69_37n	1	known	missense	c.472	p.H158N	0.034	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905	166	0	0	99	34	25.56	-	-	-	A	101382274	C	A	101382274	3	1	35	1	0	0	0	0	1	0	0	0	15766	478	17	4	474	4	TCEAL2	23	101382274	Missense_Mutation	SNP	C	TCGA-A2-A0CW-01A-21D-A10Y-09	17971129	101382274	53888286	52	1805										
IRS4	0	genome.wustl.edu	37	chrX	107979179	107979179	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.226415094339623	12	0.0189210790706696	2.33099730458221	2.47226986849628	2.26624737945493	0.237743976309059	0.854829444228896	7	gggatcgcggcgccagaggcGgccgccgctgctgcagccgc	18	16	0	1			TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	107979179	107979179	G	A	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	silent	c.396	p.A132	0.980	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	13	0	0	10	8	44.44	-	-	-	A	107979179	G	A	107979179	2	1	35	1	0	0	0	0	0	0	0	1	7896	1103	39	1		1	IRS4	23	107979179	Silent	SNP	G	TCGA-A2-A0CW-01A-21D-A10Y-09	6596905	107979179	47291381	53	1806										
SCMH1	0	genome.wustl.edu	37	chr1	41617301	41617301	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	attacctgcttgaagcaatgGacaggcgctgggactgaaca	12	9	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	41617301	41617301	G	A	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	silent	c.132	p.V44	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	230	0	0	247	156	38.71	-	-	-	A	41617301	G	A	41617301	2	1	36	1	0	0	0	0	0	0	0	1	13996	1161	41	2		2	SCMH1	1	41617301	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		41617301	207633320	1	1807										
EFCAB7	0	genome.wustl.edu	37	chr1	64027432	64027432	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agacaaggatttatggatttGaatctaatggaagctaatga	10	3	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	64027432	64027432	G	C	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	missense	c.1401	p.L467F	0.999	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	76	0	0	187	23	10.95	-	-	-	C	64027432	G	C	64027432	3	2	36	1	0	0	0	0	1	0	0	0	4975	1281	45	2	1439	2	EFCAB7	1	64027432	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	22410131	64027432	185223189	2	1808										
ZZZ3	0	genome.wustl.edu	37	chr1	78034122	78034122	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tctttatattcaggtaaattCctatacatgataggaatact	5	6	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	78034122	78034122	C	G	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	missense	c.2361	p.R787S	0.997	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	84	0	0	71	13	15.48	-	-	-	G	78034122	C	G	78034122	3	3	36	1	0	0	0	0	1	0	0	0	18347	854	30	2	362	2	ZZZ3	1	78034122	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	14006690	78034122	171216499	3	1809										
USP33	0	genome.wustl.edu	37	chr1	78191440	78191440	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcattcgaatggacatcagtGatatattctgtaagatttaa	7	5	3	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	78191440	78191440	G	C	SNP	USP33	ENST00000481579	human	ensembl	69_37n	-1	putative	nonsense	c.50	p.S17*	0.997	pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP33	HGNC	ENSG00000077254	60	0	0	100	26	20.47	-	-	-	C	78191440	G	C	78191440	4	2	36	1	0	0	0	0	0	1	0	0	17161	1280	45	2	1660	2	USP33	1	78191440	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	157318	78191440	171059181	4	1810										
CSF1	0	genome.wustl.edu	37	chr1	110466073	110466073	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggacagcaccatcggtggctCaccacagcctcgcccctctg	10	18	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	110466073	110466073	C	T	SNP	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	missense	c.830	p.S277L	0.009	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	167	1	0.59	98	14	12.5	-	-	-	T	110466073	C	T	110466073	3	4	36	1	0	0	0	0	1	0	0	0	3963	838	29	2	852	2	CSF1	1	110466073	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	32274633	110466073	138784548	5	1811										
INSRR	0	genome.wustl.edu	37	chr1	156819062	156819062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggcgcggtctccgttggtgcGggggttgatctcagccttgt	17	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	156819062	156819062	G	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.1420	p.R474C	0.970	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	39	0	0	18	12	38.71	-	-	-	A	156819062	G	A	156819062	3	1	36	1	0	0	0	0	1	0	0	0	7828	1116	39	1	2540	1	INSRR	1	156819062	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	46352989	156819062	92431559	6	1812										
DEGS1	0	genome.wustl.edu	37	chr1	224377343	224377343	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttgatatggattataattatGatggttctcacccagttggg	10	5	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	224377343	224377343	G	A	SNP	DEGS1	ENST00000323699	human	ensembl	69_37n	1	known	missense	c.147	p.M49I	0.945	pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS1	HGNC	ENSG00000143753	201	0	0	364	51	12.26	-	-	-	A	224377343	G	A	224377343	3	1	36	1	0	0	0	0	1	0	0	0	4458	1290	45	2	153	2	DEGS1	1	224377343	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	67558281	224377343	24873278	7	1813										
NVL	0	genome.wustl.edu	37	chr1	224477395	224477395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	taagtgacagaaatcaaaagCttgaggaagcctcagttttc	9	7	2	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	224477395	224477395	C	T	SNP	NVL	ENST00000281701	human	ensembl	69_37n	-1	known	missense	c.1366	p.A456T	0.009	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,smart_AAA+_ATPase	-	no_errors	NVL	HGNC	ENSG00000143748	82	0	0	182	28	13.33	-	-	-	T	224477395	C	T	224477395	3	4	36	1	0	0	0	0	1	0	0	0	10853	797	28	4	1248	4	NVL	1	224477395	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	100052	224477395	24773226	8	1814										
KIAA1383	0	genome.wustl.edu	37	chr1	232942483	232942483	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tagcctggttatataggactGaggataagaagtcacccgaa	11	7	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	1	232942483	232942483	G	A	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	missense	c.1714	p.E572K	0.050	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	60	0	0	37	49	56.98	-	-	-	A	232942483	G	A	232942483	3	1	36	1	0	0	0	0	1	0	0	0	8280	1291	45	2	1716	2	KIAA1383	1	232942483	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	8465088	232942483	16308138	9	1815										
GCKR	0	genome.wustl.edu	37	chr2	27746251	27746251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caggagtgctcttgctgggcCaggtcagaagcgcactgcgg	16	11	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	27746251	27746251	C	T	SNP	GCKR	ENST00000264717	human	ensembl	69_37n	1	known	missense	c.1823	p.P608L	0.033	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734	75	0	0	92	21	18.58	-	-	-	T	27746251	C	T	27746251	3	4	36	1	0	0	0	0	1	0	0	0	6344	594	21	4	1897	4	GCKR	2	27746251	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		27746251	215453122	10	1816										
WDR43	0	genome.wustl.edu	37	chr2	29152515	29152515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggaaaggaagacctccagaCgaatagctttccagttcttc	9	10	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	29152515	29152515	C	T	SNP	WDR43	ENST00000407426	human	ensembl	69_37n	1	known	missense	c.1376	p.T459M	0.961	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811	106	0	0	106	70	39.55	-	-	-	T	29152515	C	T	29152515	3	4	36	1	0	0	0	0	1	0	0	0	17392	536	19	1	1418	1	WDR43	2	29152515	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1406264	29152515	214046858	11	1817										
CDKL4	0	genome.wustl.edu	37	chr2	39453083	39453083	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cacctcgatgaggttcacaaGatttggatgttttaattgct	9	7	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	39453083	39453083	G	C	SNP	CDKL4	ENST00000378803	human	ensembl	69_37n	-1	known	missense	c.187	p.L63V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	52	0	0	62	35	36.08	-	-	-	C	39453083	G	C	39453083	3	2	36	1	0	0	0	0	1	0	0	0	3185	942	33	2	788	2	CDKL4	2	39453083	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	10300568	39453083	203746290	12	1818										
TTC7A	0	genome.wustl.edu	37	chr2	47249093	47249093	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggctacctggctctgggtctCacctatagcctgcaggccac	11	15	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	47249093	47249093	C	T	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	1	known	silent	c.1485	p.L495	1.000	smart_TPR_repeat	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	87	0	0	60	11	15.49	-	-	-	T	47249093	C	T	47249093	2	4	36	1	0	0	0	0	0	0	0	1	16809	813	29	2		2	TTC7A	2	47249093	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	7796010	47249093	195950280	13	1819										
MSH6	0	genome.wustl.edu	37	chr2	48028268	48028268	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaattacaaggactggcagtCtgctgtagagtgtatcgcag	12	7	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	48028268	48028268	C	T	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.3146	p.S1049F	0.999	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	229	0	0	222	44	16.54	-	-	-	T	48028268	C	T	48028268	3	4	36	1	0	0	0	0	1	0	0	0	9946	913	32	2	3160	2	MSH6	2	48028268	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	779175	48028268	195171105	14	1820										
KIAA1841	0	genome.wustl.edu	37	chr2	61297579	61297579	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atccattaattggaatccctCagactatcaactgggaaact	6	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	61297579	61297579	C	G	SNP	KIAA1841	ENST00000356719	human	ensembl	69_37n	1	known	missense	c.94	p.Q32E	1.000	superfamily_Homeodomain-like	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	92	0	0	98	11	10.09	-	-	-	G	61297579	C	G	61297579	3	3	36	1	0	0	0	0	1	0	0	0	8313	827	29	2	96	2	KIAA1841	2	61297579	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	13269311	61297579	181901794	15	1821										
MEIS1	0	genome.wustl.edu	37	chr2	66739364	66739364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	acaaaaagcgtcacaaaaagCgtggcatctttcccaaagta	7	10	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	66739364	66739364	C	T	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	missense	c.826	p.R276C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	55	0	0	42	24	35.82	-	-	-	T	66739364	C	T	66739364	3	4	36	1	0	0	0	0	1	0	0	0	9538	768	27	1	856	1	MEIS1	2	66739364	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	5441785	66739364	176460009	16	1822										
ZRANB3	0	genome.wustl.edu	37	chr2	136103162	136103162	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tttttgcatagtcggtccatCttccaaatttttgtggaaag	8	7	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	136103162	136103162	C	T	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.635	p.R212K	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	41	0	0	41	16	28.07	-	-	-	T	136103162	C	T	136103162	3	4	36	1	0	0	0	0	1	0	0	0	18317	913	32	2	2668	2	ZRANB3	2	136103162	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	69363798	136103162	107096211	17	1823										
METTL5	0	genome.wustl.edu	37	chr2	170672003	170672003	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttacctgctataatatctatCttgattttccattctgcagc	4	10	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	170672003	170672003	C	G	SNP	METTL5	ENST00000260953	human	ensembl	69_37n	-1	known	missense	c.525	p.K175N	1.000	NULL	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_RNA_cap_Gua-N2-MeTrfase,pfam_Methyltransf_11	-	no_errors	METTL5	HGNC	ENSG00000138382	37	0	0	35	12	25	-	-	-	G	170672003	C	G	170672003	3	3	36	1	0	0	0	0	1	0	0	0	9574	912	32	2	116	2	METTL5	2	170672003	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	34568841	170672003	72527370	18	1824										
AGPS	0	genome.wustl.edu	37	chr2	178301510	178301510	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggcatccttaaatcctagtGatacacctccttctgttgta	6	11	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	178301510	178301510	G	A	SNP	AGPS	ENST00000264167	human	ensembl	69_37n	1	known	missense	c.460	p.D154N	1.000	NULL	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2,superfamily_FAD-linked_Oxase-like_C	-	no_errors	AGPS	HGNC	ENSG00000018510	133	0	0	161	35	17.86	-	-	-	A	178301510	G	A	178301510	3	1	36	1	0	0	0	0	1	0	0	0	394	1290	45	2	474	2	AGPS	2	178301510	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7629507	178301510	64897863	19	1825										
SSFA2	0	genome.wustl.edu	37	chr2	182787116	182787116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ataaaaatgtggagcaagatGagttgcagcaagtcatacgg	12	5	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	182787116	182787116	G	A	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.3652	p.E1218K	0.997	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	81	0	0	81	20	19.8	-	-	-	A	182787116	G	A	182787116	3	1	36	1	0	0	0	0	1	0	0	0	15274	1291	45	2	3714	2	SSFA2	2	182787116	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	4485606	182787116	60412257	20	1826										
FAM171B	0	genome.wustl.edu	37	chr2	187627333	187627333	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tggaaccaccgtctgttcccCtgaggacccagctttaaggc	10	14	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	187627333	187627333	C	G	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.2264	p.P755R	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	49	0	0	110	22	16.67	-	-	-	G	187627333	C	G	187627333	3	3	36	1	0	0	0	0	1	0	0	0	5531	681	24	4	2294	4	FAM171B	2	187627333	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	4840217	187627333	55572040	21	1827										
BMPR2	0	genome.wustl.edu	37	chr2	203383637	203383637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttttcctttgcaaaccgtcaGaattttatcaacgaaaagaa	5	8	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	2	203383637	203383637	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	silent	c.714	p.Q238	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	101	0	0	107	18	14.4	-	-	-	A	203383637	G	A	203383637	2	1	36	1	0	0	0	0	0	0	0	1	1476	933	33	2		2	BMPR2	2	203383637	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	15756304	203383637	39815736	22	1828										
BTD	0	genome.wustl.edu	37	chr3	15677106	15677106	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccatcctgagtctgaaccctCtggctctcatcagccgccaa	7	17	4	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	15677106	15677106	C	G	SNP	BTD	ENST00000303498	human	ensembl	69_37n	1	known	missense	c.220	p.L74V	0.000	superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814	169	1	0.59	281	47	14.33	-	-	-	G	15677106	C	G	15677106	3	3	36	1	0	0	0	0	1	0	0	0	1559	912	32	2	226	2	BTD	3	15677106	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		15677106	182345324	23	1829										
GALNTL2	0	genome.wustl.edu	37	chr3	16216721	16216721	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cagttcctcctgctgctcctGatgctgggatgcgtcctgat	11	13	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	16216721	16216721	G	A	SNP	GALNTL2	ENST00000339732	human	ensembl	69_37n	1	known	silent	c.63	p.L21	0.207	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	97	0	0	143	31	17.82	-	-	-	A	16216721	G	A	16216721	2	1	36	1	0	0	0	0	0	0	0	1	6272	1277	45	2		2	GALNTL2	3	16216721	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	539615	16216721	181805709	24	1830										
KCNH8	0	genome.wustl.edu	37	chr3	19389427	19389427	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctcggagcacaaccgtcagtGacattgcagtggagattctt	11	10	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	19389427	19389427	G	T	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.781	p.D261Y	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	148	0	0	423	56	11.69	-	-	-	T	19389427	G	T	19389427	3	4	36	1	0	0	0	0	1	0	0	0	8092	1290	45	2	799	2	KCNH8	3	19389427	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	3172706	19389427	178633003	25	1831										
NEK10	0	genome.wustl.edu	37	chr3	27203970	27203970	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	accatgatctttgagatttcGaagaatcacagcaggaaggc	10	8	2	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	27203970	27203970	G	A	SNP	NEK10	ENST00000383771	human	ensembl	69_37n	-1	known	nonsense	c.928	p.R310*	0.926	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	176	0	0	340	40	10.53	-	-	-	A	27203970	G	A	27203970	4	1	36	1	0	0	0	0	0	1	0	0	10394	1073	37	1		1	NEK10	3	27203970	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7814543	27203970	170818460	26	1832										
EPM2AIP1	0	genome.wustl.edu	37	chr3	37032949	37032949	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	accttacaggcaacccctttGataattgggtaggattcagc	9	10	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	37032949	37032949	G	C	SNP	EPM2AIP1	ENST00000322716	human	ensembl	69_37n	-1	known	missense	c.1620	p.I540M	1.000	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567	100	0	0	118	32	21.19	-	-	-	C	37032949	G	C	37032949	3	2	36	1	0	0	0	0	1	0	0	0	5221	1280	45	2	207	2	EPM2AIP1	3	37032949	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	9828979	37032949	160989481	27	1833										
TMEM89	0	genome.wustl.edu	37	chr3	48658405	48658405	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cacggagcagggtgtggtctGagattggggcccgccgtttc	17	10	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	48658405	48658405	G	C	SNP	TMEM89	ENST00000330862	human	ensembl	69_37n	-1	known	nonsense	c.350	p.S117*	0.997	NULL	NULL	-	no_errors	TMEM89	HGNC	ENSG00000183396	19	0	0	10	5	33.33	-	-	-	C	48658405	G	C	48658405	4	2	36	1	0	0	0	0	0	1	0	0	16308	1294	45	2	132	2	TMEM89	3	48658405	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	11625456	48658405	149364025	28	1834										
WDR82	0	genome.wustl.edu	37	chr3	52291511	52291511	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caagcagcaacagggtcagtCatcaatggtgggcaaccaaa	11	10	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	52291511	52291511	C	A	SNP	WDR82	ENST00000296490	human	ensembl	69_37n	-1	known	missense	c.937	p.D313Y	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR82	HGNC	ENSG00000164091	118	0	0	63	19	23.17	-	-	-	A	52291511	C	A	52291511	3	1	36	1	0	0	0	0	1	0	0	0	17428	826	29	2	8	2	WDR82	3	52291511	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	3633106	52291511	145730919	29	1835										
WDR82	0	genome.wustl.edu	37	chr3	52293748	52293748	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctcaccccaaatgtgtgcatCaccactcctttgaatgcatc	5	15	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	52293748	52293748	C	T	SNP	WDR82	ENST00000296490	human	ensembl	69_37n	-1	known	silent	c.684	p.V228	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR82	HGNC	ENSG00000164091	446	0	0	346	91	20.82	-	-	-	T	52293748	C	T	52293748	2	4	36	1	0	0	0	0	0	0	0	1	17428	813	29	2		2	WDR82	3	52293748	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	2237	52293748	145728682	30	1836										
DCP1A	0	genome.wustl.edu	37	chr3	53346285	53346285	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cctcaccctctcatactcatCcttggctctgctcagcatct	4	18	6	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	53346285	53346285	C	A	SNP	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	49	0	0	42	12	22.22	-	-	-	A	53346285	C	A	53346285	1	1	36	0	1	0	0	0	0	0	0	0	4329	855	30	2		2	DCP1A	3	53346285	RNA	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1052537	53346285	144676145	31	1837										
APPL1	0	genome.wustl.edu	37	chr3	57272085	57272085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cttttcagcgttttccattgGgaggtgatgatgaagttatg	12	5	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	57272085	57272085	G	A	SNP	APPL1	ENST00000288266	human	ensembl	69_37n	1	known	missense	c.226	p.G76R	1.000	NULL	pfam_PTyr_interaction_dom,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL1	HGNC	ENSG00000157500	45	0	0	48	14	22.58	-	-	-	A	57272085	G	A	57272085	3	1	36	1	0	0	0	0	1	0	0	0	819	1233	43	4	240	4	APPL1	3	57272085	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	3925800	57272085	140750345	32	1838										
NSUN3	0	genome.wustl.edu	37	chr3	93803063	93803063	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agggctatcacacactctctCagggatctttacccaactat	6	13	4	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	93803063	93803063	C	T	SNP	NSUN3	ENST00000314622	human	ensembl	69_37n	1	known	nonsense	c.235	p.Q79*	0.036	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694	102	0	0	112	15	11.81	-	-	-	T	93803063	C	T	93803063	4	4	36	1	0	0	0	0	0	1	0	0	10752	827	29	2	245	2	NSUN3	3	93803063	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	36530978	93803063	104219367	33	1839										
IMPG2	0	genome.wustl.edu	37	chr3	100962906	100962906	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aacctcactgtcaaaccattCatagttggatgactcagtaa	6	10	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	100962906	100962906	C	T	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.2269	p.E757K	0.029	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	311	0	0	536	71	11.7	-	-	-	T	100962906	C	T	100962906	3	4	36	1	0	0	0	0	1	0	0	0	7783	835	29	2	1484	2	IMPG2	3	100962906	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	7159843	100962906	97059524	34	1840										
NFKBIZ	0	genome.wustl.edu	37	chr3	101572097	101572097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aagttagctggctgaaccccGtggtggtccctcagagctcc	12	13	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	101572097	101572097	G	C	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	missense	c.727	p.V243L	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	214	0	0	164	32	16.24	-	-	-	C	101572097	G	C	101572097	3	2	36	1	0	0	0	0	1	0	0	0	10455	1145	40	3	745	3	NFKBIZ	3	101572097	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	609191	101572097	96450333	35	1841										
WDR52	0	genome.wustl.edu	37	chr3	113098205	113098205	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaaatccacagaggatgggaGagggggttgacggaataaat	15	4	0	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	113098205	113098205	G	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.2246	p.S749Y	0.889	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	299	0	0	454	173	27.55	-	-	-	T	113098205	G	T	113098205	3	4	36	1	0	0	0	0	1	0	0	0	17401	942	33	2	3409	2	WDR52	3	113098205	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	11526108	113098205	84924225	36	1842										
STXBP5L	0	genome.wustl.edu	37	chr3	120973931	120973931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgtcataatttataaattcaGcagacatgaaattacaacag	5	6	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	120973931	120973931	G	A	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	missense	c.1631	p.S544N	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	40	0	0	71	13	15.29	-	-	-	A	120973931	G	A	120973931	3	1	36	1	0	0	0	0	1	0	0	0	15448	971	34	4	1689	4	STXBP5L	3	120973931	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7875726	120973931	77048499	37	1843										
MYLK	0	genome.wustl.edu	37	chr3	123419231	123419231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agggtctcagcaggcttggcGttgcccacgggtttcaaggg	16	10	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	123419231	123419231	G	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	silent	c.3084	p.N1028	0.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	153	0	0	92	75	44.91	-	-	-	A	123419231	G	A	123419231	2	1	36	1	0	0	0	0	0	0	0	1	10128	1136	40	1		1	MYLK	3	123419231	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	2445300	123419231	74603199	38	1844										
HEG1	0	genome.wustl.edu	37	chr3	124738384	124738384	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tagacacagtctcagtctgaGacatgggacttccattttgc	9	10	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	124738384	124738384	G	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1310	p.S437F	0.011	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	854	0	0	764	139	15.36	-	-	-	A	124738384	G	A	124738384	3	1	36	1	0	0	0	0	1	0	0	0	7095	942	33	2	2887	2	HEG1	3	124738384	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1319153	124738384	73284046	39	1845										
ACAD11	0	genome.wustl.edu	37	chr3	132297703	132297703	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggtgtgttcatgggaacaaGaatcatgctgtgctgtttgt	13	5	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	132297703	132297703	G	A	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.1711	p.L571F	1.000	superfamily_AcylCoA_DH/oxidase	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	104	0	0	199	68	25.47	-	-	-	A	132297703	G	A	132297703	3	1	36	1	0	0	0	0	1	0	0	0	109	942	33	2	655	2	ACAD11	3	132297703	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7559319	132297703	65724727	40	1846										
LRRIQ4	0	genome.wustl.edu	37	chr3	169546579	169546579	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttgggctcactttcaaaactGaagatacttggactaacagg	9	8	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	169546579	169546579	G	A	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	silent	c.1053	p.L351	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	226	0	0	255	39	13.27	-	-	-	A	169546579	G	A	169546579	2	1	36	1	0	0	0	0	0	0	0	1	9097	1277	45	2		2	LRRIQ4	3	169546579	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	37248876	169546579	28475851	41	1847										
FXR1	0	genome.wustl.edu	37	chr3	180694051	180694051	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	taaaagaagaaaacactcaaGaagcagcagtcctgaatggt	9	7	1	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	180694051	180694051	G	C	SNP	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	missense	c.1837	p.E613Q	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	86	0	0	149	60	28.57	-	-	-	C	180694051	G	C	180694051	3	2	36	1	0	0	0	0	1	0	0	0	6164	943	33	2	1903	2	FXR1	3	180694051	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	11147472	180694051	17328379	42	1848										
IL1RAP	0	genome.wustl.edu	37	chr3	190338161	190338161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaataatggaaattacacatGtgttgttacatatccagaaa	6	5	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	190338161	190338161	G	C	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.635	p.C212S	1.000	smart_Ig_sub,pfscan_Ig-like,prints_IL1_rcpt_I/II	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	76	0	0	131	17	11.49	-	-	-	C	190338161	G	C	190338161	3	2	36	1	0	0	0	0	1	0	0	0	7714	1377	48	4	649	4	IL1RAP	3	190338161	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	9644110	190338161	7684269	43	1849										
DLG1	0	genome.wustl.edu	37	chr3	196846393	196846393	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aacatggttatcaacaggctGagaagaagcttcaaaataaa	8	6	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	3	196846393	196846393	G	A	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	nonsense	c.1273	p.Q425*	1.000	pfam_PDZ_assoc,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	72	0	0	202	65	24.34	-	-	-	A	196846393	G	A	196846393	4	1	36	1	0	0	0	0	0	1	0	0	4590	1299	45	2	1601	2	DLG1	3	196846393	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	6508232	196846393	1176037	44	1850										
EVC	0	genome.wustl.edu	37	chr4	5755608	5755608	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggcccaagaggaggaacagaGaagcttcctggctgaggccc	15	11	0	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	4	5755608	5755608	G	A	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	missense	c.1412	p.R471K	0.012	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	53	0	0	38	5	11.63	-	-	-	A	5755608	G	A	5755608	3	1	36	1	0	0	0	0	1	0	0	0	5322	942	33	2	1450	2	EVC	4	5755608	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		5755608	185398668	45	1851										
OCIAD1	0	genome.wustl.edu	37	chr4	48859365	48859365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agtcaggcctatgcatgaaaGagtgccaaaaaaagaaggta	11	6	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	4	48859365	48859365	G	C	SNP	OCIAD1	ENST00000264312	human	ensembl	69_37n	1	known	missense	c.683	p.R228T	1.000	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180	126	0	0	190	38	16.59	-	-	-	C	48859365	G	C	48859365	3	2	36	1	0	0	0	0	1	0	0	0	10890	942	33	2	745	2	OCIAD1	4	48859365	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	43103757	48859365	142294911	46	1852										
AMBN	0	genome.wustl.edu	37	chr4	71469002	71469002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccaaatagcccgtttgatttCtcacggaccaatgccacaaa	6	13	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	4	71469002	71469002	C	G	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.674	p.S225C	0.980	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	96	0	0	137	29	17.37	-	-	-	G	71469002	C	G	71469002	3	3	36	1	0	0	0	0	1	0	0	0	563	913	32	2	712	2	AMBN	4	71469002	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	22609637	71469002	119685274	47	1853										
PAQR3	0	genome.wustl.edu	37	chr4	79845078	79845078	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agaagagcaatcatatacatCacaattacacggggtgcaaa	8	8	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	4	79845078	79845078	C	T	SNP	PAQR3	ENST00000511594	human	ensembl	69_37n	-1	known	silent	c.726	p.V242	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291	63	0	0	99	17	14.66	-	-	-	T	79845078	C	T	79845078	2	4	36	1	0	0	0	0	0	0	0	1	11509	813	29	2		2	PAQR3	4	79845078	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	8376076	79845078	111309198	48	1854										
SEC24D	0	genome.wustl.edu	37	chr4	119653922	119653922	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gtgggtagaagaaaagctgaGagtcagccacacccatggtc	13	9	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	4	119653922	119653922	G	A	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.2645	p.S882F	0.998	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	155	0	0	175	37	17.45	-	-	-	A	119653922	G	A	119653922	3	1	36	1	0	0	0	0	1	0	0	0	14085	942	33	2	472	2	SEC24D	4	119653922	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	39808844	119653922	71500354	49	1855										
SDHA	0	genome.wustl.edu	37	chr5	236617	236617	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggggaggccgcctgtgcctcGgtacatggtgccaaccgcct	15	14	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	236617	236617	G	A	SNP	SDHA	ENST00000264932	human	ensembl	69_37n	1	known	silent	c.1335	p.S445	0.286	pfam_FAD_bind_dom,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578	43	0	0	58	8	11.94	-	-	-	A	236617	G	A	236617	2	1	36	1	0	0	0	0	0	0	0	1	14051	1103	39	1		1	SDHA	5	236617	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		236617	180678643	50	1856										
FASTKD3	0	genome.wustl.edu	37	chr5	7867557	7867557	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aatacaaagattgcgaacttCcatgccaccttttctgagac	6	11	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	7867557	7867557	C	A	SNP	FASTKD3	ENST00000264669	human	ensembl	69_37n	-1	known	nonsense	c.640	p.E214*	0.949	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279	146	1	0.68	196	66	25.19	-	-	-	A	7867557	C	A	7867557	4	1	36	1	0	0	0	0	0	1	0	0	5733	864	30	2	1372	2	FASTKD3	5	7867557	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	7630940	7867557	173047703	51	1857										
ITGA1	0	genome.wustl.edu	37	chr5	52214648	52214648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gaaaaactgccatatggaggGaaaggaaacagtatgcataa	11	5	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	52214648	52214648	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.2075	p.G692E	0.995	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	79	0	0	127	28	18.06	-	-	-	A	52214648	G	A	52214648	3	1	36	1	0	0	0	0	1	0	0	0	7926	1174	41	2	2137	2	ITGA1	5	52214648	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	44347091	52214648	128700612	52	1858										
ANKRD34B	0	genome.wustl.edu	37	chr5	79855559	79855559	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aacttcagggccagctttttCtaagcaagcatgcatcagag	9	10	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	79855559	79855559	C	G	SNP	ANKRD34B	ENST00000338682	human	ensembl	69_37n	-1	known	missense	c.280	p.E94Q	0.870	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34B	HGNC	ENSG00000189127	208	0	0	128	33	20.5	-	-	-	G	79855559	C	G	79855559	3	3	36	1	0	0	0	0	1	0	0	0	662	922	32	2	1268	2	ANKRD34B	5	79855559	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	27640911	79855559	101059701	53	1859										
PKD2L2	0	genome.wustl.edu	37	chr5	137230240	137230240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctttgatgagtgaatgttatGgcaaatatacttctgcaaat	8	5	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	137230240	137230240	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	1	known	missense	c.466	p.G156S	0.052	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	117	0	0	111	32	22.38	-	-	-	A	137230240	G	A	137230240	3	1	36	1	0	0	0	0	1	0	0	0	12042	1348	47	4	480	4	PKD2L2	5	137230240	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	57374681	137230240	43685020	54	1860										
CDC23	0	genome.wustl.edu	37	chr5	137542199	137542199	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggttctaaatatggatgtttCactaaaggcagaatgacatt	9	5	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	137542199	137542199	C	T	SNP	CDC23	ENST00000394884	human	ensembl	69_37n	-1	known	missense	c.409	p.E137K	0.339	NULL	pfam_APC8	-	no_errors	CDC23	HGNC	ENSG00000094880	119	0	0	82	23	21.9	-	-	-	T	137542199	C	T	137542199	3	4	36	1	0	0	0	0	1	0	0	0	3090	841	29	2		2	CDC23	5	137542199	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	311959	137542199	43373061	55	1861										
HSPA9	0	genome.wustl.edu	37	chr5	137909537	137909537	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctgctcccttgattgcttctGatctgtaagacatttagaac	7	10	2	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	137909537	137909537	G	C	SNP	HSPA9	ENST00000297185	human	ensembl	69_37n	-1	known	nonsense	c.143	p.S48*	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013	52	0	0	31	8	20.51	-	-	-	C	137909537	G	C	137909537	4	2	36	1	0	0	0	0	0	1	0	0	7470	1294	45	2	1956	2	HSPA9	5	137909537	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	367338	137909537	43005723	56	1862										
PCDHAC1	0	genome.wustl.edu	37	chr5	140306796	140306796	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgctcgaggacccgctggagCtgcacaagattcggattcac	12	12	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	140306796	140306796	C	T	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	silent	c.319	p.L107	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	39	0	0	29	12	29.27	-	-	-	T	140306796	C	T	140306796	2	4	36	1	0	0	0	0	0	0	0	1	11605	796	28	4		4	PCDHAC1	5	140306796	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	2397259	140306796	40608464	57	1863										
PCDHGA2	0	genome.wustl.edu	37	chr5	140719243	140719243	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgcgtgaaggtcctggatgcGaacgacaatgcgcctgtttt	13	9	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	140719243	140719243	G	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	silent	c.705	p.A235	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	139	0	0	114	36	23.84	-	-	-	C	140719243	G	C	140719243	2	2	36	1	0	0	0	0	0	0	0	1	11627	1045	37	3		3	PCDHGA2	5	140719243	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	412447	140719243	40196017	58	1864										
SH3TC2	0	genome.wustl.edu	37	chr5	148427519	148427519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gtccatttacacacctcctgGagcggctctttacacagaag	8	13	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	148427519	148427519	G	A	SNP	SH3TC2	ENST00000515425	human	ensembl	69_37n	-1	known	missense	c.185	p.S62F	0.998	NULL	pfam_SH3_domain,pfam_TPR-1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247	179	0	0	192	47	19.67	-	-	-	A	148427519	G	A	148427519	3	1	36	1	0	0	0	0	1	0	0	0	14351	1174	41	2	3741	2	SH3TC2	5	148427519	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7708276	148427519	32487741	59	1865										
ABLIM3	0	genome.wustl.edu	37	chr5	148629383	148629383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttttctctcctgcagcccctCggtcgcactacctggctgac	8	17	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	148629383	148629383	C	T	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	missense	c.1705	p.R569W	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	180	0	0	90	24	21.05	-	-	-	T	148629383	C	T	148629383	3	4	36	1	0	0	0	0	1	0	0	0	96	875	31	1	1775	1	ABLIM3	5	148629383	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	201864	148629383	32285877	60	1866										
DCTN4	0	genome.wustl.edu	37	chr5	150112930	150112930	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttttagtaccaaattctcacCgaaaaagccagaggcatata	6	9	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	150112930	150112930	C	T	SNP	DCTN4	ENST00000446090	human	ensembl	69_37n	-1	known	silent	c.537	p.S179	1.000	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912	120	0	0	84	31	26.96	-	-	-	T	150112930	C	T	150112930	2	4	36	1	0	0	0	0	0	0	0	1	4340	666	23	1		1	DCTN4	5	150112930	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1483547	150112930	30802330	61	1867										
DDX41	0	genome.wustl.edu	37	chr5	176942966	176942966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	catcatacgtaatgcccttaGccatctccttcactgacatc	4	15	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	5	176942966	176942966	G	A	SNP	DDX41	ENST00000507955	human	ensembl	69_37n	-1	known	missense	c.398	p.A133V	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	53	0	0	47	9	16.07	-	-	-	A	176942966	G	A	176942966	3	1	36	1	0	0	0	0	1	0	0	0	4392	971	34	4	1522	4	DDX41	5	176942966	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	26830036	176942966	3972294	62	1868										
HIST1H1D	0	genome.wustl.edu	37	chr6	26234687	26234687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agcggttgctggcttctttaCcttcttaggagtctttttga	10	8	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	26234687	26234687	C	T	SNP	HIST1H1D	ENST00000244534	human	ensembl	69_37n	-1	known	missense	c.475	p.V159I	0.602	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575	107	1	0.93	77	10	11.24	-	-	-	T	26234687	C	T	26234687	3	4	36	1	0	0	0	0	1	0	0	0	7176	507	18	4	194	4	HIST1H1D	6	26234687	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		26234687	144880380	63	1869										
TRIM10	0	genome.wustl.edu	37	chr6	30126372	30126372	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcctcaggtgtgcgaactcaGaaatcacctgttgtctcttg	9	11	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	30126372	30126372	G	A	SNP	TRIM10	ENST00000449742	human	ensembl	69_37n	-1	known	missense	c.560	p.S187F	0.077	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613	701	0	0	318	157	32.91	-	-	-	A	30126372	G	A	30126372	3	1	36	1	0	0	0	0	1	0	0	0	16582	942	33	2	993	2	TRIM10	6	30126372	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	3891685	30126372	140988695	64	1870										
MDC1	0	genome.wustl.edu	37	chr6	30679725	30679725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttcctgtggggacctgggctCcctctctctgtggctgggtg	15	12	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	30679725	30679725	C	T	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.1994	p.G665E	1.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	385	0	0	136	159	53.9	-	-	-	T	30679725	C	T	30679725	3	4	36	1	0	0	0	0	1	0	0	0	9474	855	30	2	4319	2	MDC1	6	30679725	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	553353	30679725	140435342	65	1871										
BRPF3	0	genome.wustl.edu	37	chr6	36168619	36168619	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgaatgaaaaacggcgagtaGatgggcacagtttggtgtct	14	5	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	36168619	36168619	G	C	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.520	p.D174H	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	141	0	0	103	12	10.34	-	-	-	C	36168619	G	C	36168619	3	2	36	1	0	0	0	0	1	0	0	0	1529	942	33	2	522	2	BRPF3	6	36168619	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	5488894	36168619	134946448	66	1872										
DST	0	genome.wustl.edu	37	chr6	56480618	56480618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaacatcggattcccatttcCttatttataatatttgcatt	3	8	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	56480618	56480618	C	T	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	silent	c.7647	p.K2549	0.998	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	228	0	0	270	58	17.68	-	-	-	T	56480618	C	T	56480618	2	4	36	1	0	0	0	0	0	0	0	1	4818	680	24	4		4	DST	6	56480618	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	20311999	56480618	114634449	67	1873										
MTO1	0	genome.wustl.edu	37	chr6	74171591	74171591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcccagcatgttctacttccGaggctgtggccgttgggtcg	13	12	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	74171591	74171591	G	A	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.14	p.R5Q	0.072	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	69	0	0	28	5	15.15	-	-	-	A	74171591	G	A	74171591	3	1	36	1	0	0	0	0	1	0	0	0	10025	1058	37	1	16	1	MTO1	6	74171591	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	17690973	74171591	96943476	68	1874										
MDN1	0	genome.wustl.edu	37	chr6	90450019	90450019	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cgaaattttttcccagcagtCaacagctctatttcactatc	4	12	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	90450019	90450019	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.4527	p.L1509	0.998	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	150	0	0	171	30	14.93	-	-	-	T	90450019	C	T	90450019	2	4	36	1	0	0	0	0	0	0	0	1	9486	825	29	2		2	MDN1	6	90450019	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	16278428	90450019	80665048	69	1875										
T	0	genome.wustl.edu	37	chr6	166580304	166580304	+	Frame_Shift_Del	DEL	C	C	-													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggagtacatggcgttggggtCcaggccagacacgttcacct							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	6	166580304	166580304	C	-	DEL	T	ENST00000296946	human	ensembl	69_37n	-1	known	frame_shift_del	c.247	p.D83fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_Brachyury,prints_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458	29	0	0	5	2	28.57	-	-	-	-	166580304	C	-	166580304	7	5	36	1	0	1	0	1	0	0	0	0	15580	855	30	0	1088	0	T	6	166580304	Frame_Shift_Del	DEL	C	TCGA-A2-A0CX-01A-21W-A019-09	76130285	166580304	4534763	70	1876										
RSPH10B2	0	genome.wustl.edu	37	chr7	6836384	6836384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agcggaagatggaagatgacGaactggaagcaaggtaactt	14	5	0	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	6836384	6836384	G	A	SNP	RSPH10B2	ENST00000297186	human	ensembl	69_37n	1	known	missense	c.2419	p.E807K	0.094	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B2	HGNC	ENSG00000169402	135	0	0	98	15	13.27	-	-	-	A	6836384	G	A	6836384	3	1	36	1	0	0	0	0	1	0	0	0	13790	1059	37	1	5178	1	RSPH10B2	7	6836384	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		6836384	152302279	71	1877										
ZNRF2	0	genome.wustl.edu	37	chr7	30363299	30363299	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caaaatttgtatcctcagatGaaatggatttgcatcttgta	7	6	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	30363299	30363299	G	A	SNP	ZNRF2	ENST00000323037	human	ensembl	69_37n	1	known	missense	c.511	p.E171K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF2	HGNC	ENSG00000180233	164	0	0	249	48	16.16	-	-	-	A	30363299	G	A	30363299	3	1	36	1	0	0	0	0	1	0	0	0	18305	1291	45	2	517	2	ZNRF2	7	30363299	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	23526915	30363299	128775364	72	1878										
PION	0	genome.wustl.edu	37	chr7	76984911	76984911	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gcagatcaggtctggatgttGaacattaagtaggtggaaga	14	4	2	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	76984911	76984911	G	A	SNP	PION	ENST00000257626	human	ensembl	69_37n	-1	known	nonsense	c.1081	p.Q361*	0.986	NULL	NULL	-	no_errors	PION	HGNC	ENSG00000186088	147	0	0	211	39	15.54	-	-	-	A	76984911	G	A	76984911	4	1	36	1	0	0	0	0	0	1	0	0	12008	1299	45	2	1551	2	PION	7	76984911	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	46621612	76984911	82153752	73	1879										
SAMD9	0	genome.wustl.edu	37	chr7	92732577	92732577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cccagaaagccttcttgtttCcaattcctaagaatttttca	4	11	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	92732577	92732577	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2834	p.G945E	0.004	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	143	0	0	151	28	15.64	-	-	-	T	92732577	C	T	92732577	3	4	36	1	0	0	0	0	1	0	0	0	13912	855	30	2	1939	2	SAMD9	7	92732577	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	15747666	92732577	66406086	74	1880										
C7orf60	0	genome.wustl.edu	37	chr7	112461888	112461888	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atctgagtcatatggcgcatCagggagttctgtgaaaccat	11	8	4	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	112461888	112461888	C	T	SNP	C7orf60	ENST00000297145	human	ensembl	69_37n	-1	known	missense	c.1129	p.D377N	1.000	NULL	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603	102	0	0	141	17	10.69	-	-	-	T	112461888	C	T	112461888	3	4	36	1	0	0	0	0	1	0	0	0	2430	826	29	2	92	2	C7orf60	7	112461888	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	19729311	112461888	46676775	75	1881										
BPGM	0	genome.wustl.edu	37	chr7	134346544	134346544	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gagcgtcactatggggccttGatcggtctcaacagggagca	14	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	134346544	134346544	G	A	SNP	BPGM	ENST00000344924	human	ensembl	69_37n	1	known	silent	c.285	p.L95	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331	182	0	0	178	41	18.72	-	-	-	A	134346544	G	A	134346544	2	1	36	1	0	0	0	0	0	0	0	1	1496	1281	45	2		2	BPGM	7	134346544	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	21884656	134346544	24792119	76	1882										
TAS2R3	0	genome.wustl.edu	37	chr7	141464471	141464471	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggaatgtgactgaacacttCagaaagaagaggagtgagta	13	4	1	6			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	141464471	141464471	C	T	SNP	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	silent	c.513	p.F171	0.003	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	355	0	0	283	62	17.97	-	-	-	T	141464471	C	T	141464471	2	4	36	1	0	0	0	0	0	0	0	1	15664	825	29	2		2	TAS2R3	7	141464471	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	7117927	141464471	17674192	77	1883										
PRSS1	0	genome.wustl.edu	37	chr7	142459748	142459748	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aagactctgaacaatgacatCatgttaatcaagctctcctc	5	11	4	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	7	142459748	142459748	C	T	SNP	PRSS1	ENST00000311737	human	ensembl	69_37n	1	known	silent	c.324	p.I108	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS1	HGNC	ENSG00000204983	225	0	0	185	43	18.86	-	-	-	T	142459748	C	T	142459748	2	4	36	1	0	0	0	0	0	0	0	1	12694	816	29	2		2	PRSS1	7	142459748	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	995277	142459748	16678915	78	1884										
CDCA2	0	genome.wustl.edu	37	chr8	25319710	25319710	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggaaatctcctttggcacaaGattctccttcccaggtatga	8	11	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	8	25319710	25319710	G	C	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.373	p.D125H	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	159	0	0	129	23	15.13	-	-	-	C	25319710	G	C	25319710	3	2	36	1	0	0	0	0	1	0	0	0	3115	942	33	2	383	2	CDCA2	8	25319710	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		25319710	121044312	79	1885										
UTP23	0	genome.wustl.edu	37	chr8	117784063	117784063	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaagtactttctgagaagcaGaatgcagaaggagaatgaat	11	4	1	5			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	8	117784063	117784063	G	A	SNP	UTP23	ENST00000309822	human	ensembl	69_37n	1	known	silent	c.732	p.Q244	0.992	NULL	pfam_DUF652	-	no_errors	UTP23	HGNC	ENSG00000147679	204	0	0	417	107	20.38	-	-	-	A	117784063	G	A	117784063	2	1	36	1	0	0	0	0	0	0	0	1	17197	933	33	2		2	UTP23	8	117784063	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	92464353	117784063	28579959	80	1886										
FAM83A	0	genome.wustl.edu	37	chr8	124195521	124195521	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cactgtgtacttccagaccgTcaagcacaacaacatcagag	7	13	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	8	124195521	124195521	T	A	SNP	FAM83A	ENST00000318462	human	ensembl	69_37n	1	known	missense	c.425	p.V142D	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689	81	0	0	156	21	11.86	-	-	-	A	124195521	T	A	124195521	3	1	36	1	0	0	0	0	1	0	0	0	5678	1667	58	5	427	5	FAM83A	8	124195521	Missense_Mutation	SNP	T	TCGA-A2-A0CX-01A-21W-A019-09	6411458	124195521	22168501	81	1887										
TRAPPC9	0	genome.wustl.edu	37	chr8	141468516	141468517	+	Frame_Shift_Ins	INS	-	-	C													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccgtgactcccacggtcgtgINSccccccacgtgggtgggtga							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	8	141468516	141468517	-	C	INS	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	frame_shift_ins	c.148_147	p.H49fs	0.000:0.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	10	0	0	4	2	33.33	-	-	-	C	141468517	-	C	141468516	7	5	36	1	0	1	1	0	0	0	0	0	16561	1319	46	0	3684	0	TRAPPC9	8	141468516	Frame_Shift_Ins	INS	-	TCGA-A2-A0CX-01A-21W-A019-09	17272995	141468516	4895506	82	1888										
C8orf31	0	genome.wustl.edu	37	chr8	144124425	144124425	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cttcccctgatctcatggctGaaaagccacaccagaattcc	6	15	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	8	144124425	144124425	G	A	SNP	C8orf31	ENST00000395172	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	0.001	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335	74	0	0	50	17	25.37	-	-	-	A	144124425	G	A	144124425	3	1	36	1	0	0	0	0	1	0	0	0	2444	1291	45	2	9	2	C8orf31	8	144124425	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	2655909	144124425	2239597	83	1889										
IFNA17	0	genome.wustl.edu	37	chr9	21227804	21227804	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tccatcccaacctcctgtatCacacatgcttccaggttatt	4	15	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	21227804	21227804	C	A	SNP	IFNA17	ENST00000413767	human	ensembl	69_37n	-1	known	silent	c.369	p.V123	0.004	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA17	HGNC	ENSG00000234829	402	0	0	579	104	15.23	-	-	-	A	21227804	C	A	21227804	2	1	36	1	0	0	0	0	0	0	0	1	7590	813	29	2		2	IFNA17	9	21227804	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		21227804	119985627	84	1890										
TPM2	0	genome.wustl.edu	37	chr9	35685268	35685268	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	acccccgggtatctttacctCtcggccacctcagccctctc	6	20	4	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	35685268	35685268	C	T	SNP	TPM2	ENST00000378300	human	ensembl	69_37n	-1	known	silent	c.561	p.E187	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467	83	0	0	71	17	19.32	-	-	-	T	35685268	C	T	35685268	2	4	36	1	0	0	0	0	0	0	0	1	16502	912	32	2		2	TPM2	9	35685268	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	14457464	35685268	105528163	85	1891										
CBWD3	0	genome.wustl.edu	37	chr9	70912543	70912543	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccaggaaatgcaaaggaagaAcatcttaatatgtttattca	7	6	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	70912543	70912543	A	T	SNP	CBWD3	ENST00000360171	human	ensembl	69_37n	1	known	missense	c.864	p.E288D	0.900	pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	pfam_Cbl_biosynth_CobW-like,pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD3	HGNC	ENSG00000196873	29	0	0	24	4	14.29	-	-	-	T	70912543	A	T	70912543	3	4	36	1	0	0	0	0	1	0	0	0	2739	40	2	5	2158	5	CBWD3	9	70912543	Missense_Mutation	SNP	A	TCGA-A2-A0CX-01A-21W-A019-09	35227275	70912543	70300888	86	1892										
DBC1	0	genome.wustl.edu	37	chr9	121929782	121929782	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agtagggtaggtagccgagtCcgactacgtaggtagatgtg	16	6	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	121929782	121929782	C	G	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1866	p.R622	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	167	0	0	118	20	14.49	-	-	-	G	121929782	C	G	121929782	2	3	36	1	0	0	0	0	0	0	0	1	4279	842	30	2		2	DBC1	9	121929782	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	51017239	121929782	19283649	87	1893										
NAIF1	0	genome.wustl.edu	37	chr9	130825724	130825724	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccctcactggatgatgctgtCtggctgcccattctgggcca	11	14	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	130825724	130825724	C	T	SNP	NAIF1	ENST00000373078	human	ensembl	69_37n	-1	known	missense	c.967	p.D323N	0.994	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	67	0	0	33	4	10.81	-	-	-	T	130825724	C	T	130825724	3	4	36	1	0	0	0	0	1	0	0	0	10218	913	32	2	20	2	NAIF1	9	130825724	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	8895942	130825724	10387707	88	1894										
DOLK	0	genome.wustl.edu	37	chr9	131708299	131708299	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gctcctcccaggctacccttCtgtgtgcagggtctggggat	13	13	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	131708299	131708299	C	A	SNP	DOLK	ENST00000372586	human	ensembl	69_37n	-1	known	missense	c.1284	p.Q428H	0.998	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283	60	0	0	32	8	20	-	-	-	A	131708299	C	A	131708299	3	1	36	1	0	0	0	0	1	0	0	0	4738	912	32	2	336	2	DOLK	9	131708299	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	882575	131708299	9505132	89	1895										
NUP188	0	genome.wustl.edu	37	chr9	131768007	131768007	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tccgaagtggccccctccttCgggacccttctggccacagt	10	17	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	9	131768007	131768007	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	silent	c.4821	p.F1607	0.097	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	408	1	0.24	356	53	12.96	-	-	-	T	131768007	C	T	131768007	2	4	36	1	0	0	0	0	0	0	0	1	10831	883	31	1		1	NUP188	9	131768007	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	59708	131768007	9445424	90	1896										
NET1	0	genome.wustl.edu	37	chr10	5495482	5495482	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	taggagaagcaaccaagcctGatggaacagtggagcagatt	13	7	0	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	5495482	5495482	G	A	SNP	NET1	ENST00000355029	human	ensembl	69_37n	1	known	missense	c.727	p.D243N	0.941	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	NET1	HGNC	ENSG00000173848	134	0	0	160	41	20.3	-	-	-	A	5495482	G	A	5495482	3	1	36	1	0	0	0	0	1	0	0	0	10410	1290	45	2	854	2	NET1	10	5495482	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		5495482	130039265	91	1897										
DHTKD1	0	genome.wustl.edu	37	chr10	12123578	12123578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccctgctggagaatgtgcctGaaatccaagccctggtgcag	12	12	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	12123578	12123578	G	A	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	missense	c.262	p.E88K	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	273	1	0.36	196	42	17.65	-	-	-	A	12123578	G	A	12123578	3	1	36	1	0	0	0	0	1	0	0	0	4536	1291	45	2	268	2	DHTKD1	10	12123578	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	6628096	12123578	123411169	92	1898										
STAM	0	genome.wustl.edu	37	chr10	17702462	17702462	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aatcccctttacaatctacaGagaaagcaaccagcgagatg	7	11	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	17702462	17702462	G	C	SNP	STAM	ENST00000377524	human	ensembl	69_37n	1	known	splice_site	c.41-1	e2-1	1.000	-	-	-	no_errors	STAM	HGNC	ENSG00000136738	226	0	0	282	62	18.02	-	-	-	C	17702462	G	C	17702462	5	2	36	1	0	0	0	0	0	0	1	0	15339	956	33	2	46	2	STAM	10	17702462	Splice_Site	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	5578884	17702462	117832285	93	1899										
PARD3	0	genome.wustl.edu	37	chr10	34400415	34400415	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctggggttctctttggcactCtggaagccttccccagggga	13	12	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	34400415	34400415	C	T	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	silent	c.3753	p.Q1251	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	97	0	0	58	14	19.44	-	-	-	T	34400415	C	T	34400415	2	4	36	1	0	0	0	0	0	0	0	1	11516	912	32	2		2	PARD3	10	34400415	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	16697953	34400415	101134332	94	1900										
GPRIN2	0	genome.wustl.edu	37	chr10	46999608	46999608	+	Frame_Shift_Del	DEL	C	C	-													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tggcatgagggaggtgagggCtggtggctgctgccatgccc							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	46999608	46999608	C	-	DEL	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	frame_shift_del	c.728	p.A243fs	0.001	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	29	0	0	24	4	13.79	-	-	-	-	46999608	C	-	46999608	7	5	36	1	0	1	0	1	0	0	0	0	6781	797	28	0	730	0	GPRIN2	10	46999608	Frame_Shift_Del	DEL	C	TCGA-A2-A0CX-01A-21W-A019-09	12599193	46999608	88535139	95	1901										
C10orf107	0	genome.wustl.edu	37	chr10	63519907	63519907	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atatttattcaacattcataGagccccccacaatattggat	4	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	63519907	63519907	G	C	SNP	C10orf107	ENST00000330194	human	ensembl	69_37n	1	known	missense	c.379	p.E127Q	0.931	NULL	NULL	-	no_errors	C10orf107	HGNC	ENSG00000183346	92	0	0	147	27	15.52	-	-	-	C	63519907	G	C	63519907	3	2	36	1	0	0	0	0	1	0	0	0	1591	943	33	2	393	2	C10orf107	10	63519907	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	16520299	63519907	72014840	96	1902										
TCTN3	0	genome.wustl.edu	37	chr10	97442429	97442429	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gaaatgctgcagtgcctgttGaggatcctggtccaccctcc	11	13	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	97442429	97442429	G	A	SNP	TCTN3	ENST00000371217	human	ensembl	69_37n	-1	known	silent	c.1485	p.L495	0.919	NULL	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977	178	0	0	163	33	16.84	-	-	-	A	97442429	G	A	97442429	2	1	36	1	0	0	0	0	0	0	0	1	15819	1277	45	2		2	TCTN3	10	97442429	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	33922522	97442429	38092318	97	1903										
BLOC1S2	0	genome.wustl.edu	37	chr10	102046374	102046374	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccgggtacctcgggcgggctCatcactccgggtcgccagta	14	15	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	102046374	102046374	C	T	SNP	BLOC1S2	ENST00000370372	human	ensembl	69_37n	-1	known	missense	c.43	p.E15K	0.851	NULL	pfam_BLOC1_su2	-	no_errors	BLOC1S2	HGNC	ENSG00000196072	16	0	0	8	4	33.33	-	-	-	T	102046374	C	T	102046374	3	4	36	1	0	0	0	0	1	0	0	0	1454	835	29	2	405	2	BLOC1S2	10	102046374	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	4603945	102046374	33488373	98	1904										
FAM178A	0	genome.wustl.edu	37	chr10	102705188	102705188	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atgagtttggaaaaacagctGaaacagattcctttagtaga	9	5	0	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	102705188	102705188	G	T	SNP	FAM178A	ENST00000370269	human	ensembl	69_37n	1	known	silent	c.2859	p.L953	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	36	0	0	46	14	23.33	-	-	-	T	102705188	G	T	102705188	2	4	36	1	0	0	0	0	0	0	0	1	5543	1277	45	2		2	FAM178A	10	102705188	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	658814	102705188	32829559	99	1905										
C10orf2	0	genome.wustl.edu	37	chr10	102748459	102748459	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tggaaccgagcaatacctctCtgggagctgcctgatcagga	12	11	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	102748459	102748459	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	silent	c.492	p.L164	0.375	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	142	0	0	86	12	12.12	-	-	-	T	102748459	C	T	102748459	2	4	36	1	0	0	0	0	0	0	0	1	1607	900	32	2		2	C10orf2	10	102748459	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	43271	102748459	32786288	100	1906										
PNLIPRP3	0	genome.wustl.edu	37	chr10	118196289	118196289	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	accatggaccaggactttctCaacagagttggtaggtttac	10	9	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	118196289	118196289	C	T	SNP	PNLIPRP3	ENST00000369230	human	ensembl	69_37n	1	known	missense	c.116	p.S39L	0.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837	147	0	0	208	40	16.13	-	-	-	T	118196289	C	T	118196289	3	4	36	1	0	0	0	0	1	0	0	0	12226	838	29	2	122	2	PNLIPRP3	10	118196289	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	15447830	118196289	17338458	101	1907										
FAM196A	0	genome.wustl.edu	37	chr10	128974473	128974473	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cagctggcccgaggacagctGtgtgtccctctgctcattct	11	14	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	10	128974473	128974473	G	A	SNP	FAM196A	ENST00000522781	human	ensembl	69_37n	-1	known	nonsense	c.187	p.Q63*	0.974	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916	44	0	0	43	9	17.31	-	-	-	A	128974473	G	A	128974473	4	1	36	1	0	0	0	0	0	1	0	0	5570	1386	48	4	1264	4	FAM196A	10	128974473	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	10778184	128974473	6560274	102	1908										
CDHR5	0	genome.wustl.edu	37	chr11	621446	621446	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	actcaccagggagaagtagtCactggcaccctggggagggt	15	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	621446	621446	C	T	SNP	CDHR5	ENST00000358353	human	ensembl	69_37n	-1	known	missense	c.517	p.D173N	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834	14	0	0	6	4	40	-	-	-	T	621446	C	T	621446	3	4	36	1	0	0	0	0	1	0	0	0	3151	826	29	2	2060	2	CDHR5	11	621446	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		621446	134385070	103	1909										
RRM1	0	genome.wustl.edu	37	chr11	4133255	4133255	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttactcatgcttcgcccactCtcttcaatgctggtaccaac	5	15	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	4133255	4133255	C	T	SNP	RRM1	ENST00000300738	human	ensembl	69_37n	1	known	missense	c.613	p.L205F	1.000	pfam_Ribncl_Rdtase_lsu_N,superfamily_Ribnucl_Rdtase_R1-su_N,tigrfam_NrdE_NrdA	pfam_Ribncl_red_lg_C,pfam_Ribncl_Rdtase_lsu_N,pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone,prints_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	68	0	0	48	15	23.81	-	-	-	T	4133255	C	T	4133255	3	4	36	1	0	0	0	0	1	0	0	0	13767	913	32	2	639	2	RRM1	11	4133255	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	3511809	4133255	130873261	104	1910										
PSMA1	0	genome.wustl.edu	37	chr11	14539262	14539262	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcaacatggagaatttttttCtgatgagctgcaagctctga	9	7	3	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	14539262	14539262	C	A	SNP	PSMA1	ENST00000418988	human	ensembl	69_37n	-1	known	missense	c.198	p.Q66H	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA1	HGNC	ENSG00000129084	170	0	0	111	30	21.28	-	-	-	A	14539262	C	A	14539262	3	1	36	1	0	0	0	0	1	0	0	0	12746	912	32	2	689	2	PSMA1	11	14539262	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	10406007	14539262	120467254	105	1911										
PRR5L	0	genome.wustl.edu	37	chr11	36472825	36472825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggagctggtgaagcaagtgGtttctcctttcctcggcatc	12	10	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	36472825	36472825	G	A	SNP	PRR5L	ENST00000378867	human	ensembl	69_37n	1	known	missense	c.652	p.V218I	1.000	NULL	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362	95	0	0	55	16	22.54	-	-	-	A	36472825	G	A	36472825	3	1	36	1	0	0	0	0	1	0	0	0	12682	1261	44	4	684	4	PRR5L	11	36472825	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	21933563	36472825	98533691	106	1912										
FNBP4	0	genome.wustl.edu	37	chr11	47765568	47765568	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	actcctactggtagattctgGactggtagctcgaacaaaca	9	10	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	47765568	47765568	G	C	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.1393	p.P465A	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	115	0	0	86	13	13	-	-	-	C	47765568	G	C	47765568	3	2	36	1	0	0	0	0	1	0	0	0	6013	1174	41	2	1700	2	FNBP4	11	47765568	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	11292743	47765568	87240948	107	1913										
B3GNT1	0	genome.wustl.edu	37	chr11	66114072	66114072	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgccaaggtaccacgtaggcGggccgcagcaagctctcttc	12	14	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	66114072	66114072	G	A	SNP	B3GNT1	ENST00000311181	human	ensembl	69_37n	-1	known	silent	c.945	p.P315	0.981	NULL	NULL	-	no_errors	B3GNT1	HGNC	ENSG00000174684	68	0	0	30	12	28.57	-	-	-	A	66114072	G	A	66114072	2	1	36	1	0	0	0	0	0	0	0	1	1260	1103	39	1		1	B3GNT1	11	66114072	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	18348504	66114072	68892444	108	1914										
C2CD3	0	genome.wustl.edu	37	chr11	73789584	73789584	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tccattctgacaaaatctttCaggctgttctcaaagctcca	5	12	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	73789584	73789584	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	silent	c.4179	p.L1393	0.004	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	149	0	0	130	31	19.25	-	-	-	T	73789584	C	T	73789584	2	4	36	1	0	0	0	0	0	0	0	1	2174	813	29	2		2	C2CD3	11	73789584	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	7675512	73789584	61216932	109	1915										
PAK1	0	genome.wustl.edu	37	chr11	77103382	77103382	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atcaaatactatacttttatCtccaggtaaaatggatcggt	6	7	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	77103382	77103382	C	T	SNP	PAK1	ENST00000278568	human	ensembl	69_37n	-1	known	missense	c.184	p.D62N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK1	HGNC	ENSG00000149269	225	0	0	125	42	25.15	-	-	-	T	77103382	C	T	77103382	3	4	36	1	0	0	0	0	1	0	0	0	11472	913	32	2	1562	2	PAK1	11	77103382	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	3313798	77103382	57903134	110	1916										
C11orf87	0	genome.wustl.edu	37	chr11	109294466	109294466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cagcggcaacacgggtgcccGcggcccaggcgcagtaggca	16	15	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	109294466	109294466	G	A	SNP	C11orf87	ENST00000327419	human	ensembl	69_37n	1	known	missense	c.107	p.R36H	0.991	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	C11orf87	HGNC	ENSG00000185742	46	0	0	36	8	18.18	-	-	-	A	109294466	G	A	109294466	3	1	36	1	0	0	0	0	1	0	0	0	1680	1087	38	1	109	1	C11orf87	11	109294466	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	32191084	109294466	25712050	111	1917										
HEPACAM	0	genome.wustl.edu	37	chr11	124793676	124793676	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gccctggctgatggggttctCcaccatgcagctgtacaggt	13	12	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	11	124793676	124793676	C	G	SNP	HEPACAM	ENST00000298251	human	ensembl	69_37n	-1	known	missense	c.658	p.E220Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM	HGNC	ENSG00000165478	118	0	0	68	9	11.69	-	-	-	G	124793676	C	G	124793676	3	3	36	1	0	0	0	0	1	0	0	0	7103	864	30	2	612	2	HEPACAM	11	124793676	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	15499210	124793676	10212840	112	1918										
ETV6	0	genome.wustl.edu	37	chr12	11905408	11905408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aacgaatttcatatacacctCcagagagcccagtgccgagt	8	12	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	11905408	11905408	C	T	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	missense	c.58	p.P20S	1.000	superfamily_SAM/pointed	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	181	0	0	177	28	13.66	-	-	-	T	11905408	C	T	11905408	3	4	36	1	0	0	0	0	1	0	0	0	5320	855	30	2	64	2	ETV6	12	11905408	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		11905408	121946487	113	1919										
BICD1	0	genome.wustl.edu	37	chr12	32369283	32369283	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	catcgaaggaggcttactatCtggggaagatcttggagatg	14	6	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	32369283	32369283	C	G	SNP	BICD1	ENST00000281474	human	ensembl	69_37n	1	known	missense	c.316	p.L106V	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC-like	-	no_errors	BICD1	HGNC	ENSG00000151746	68	0	0	62	12	16.22	-	-	-	G	32369283	C	G	32369283	3	3	36	1	0	0	0	0	1	0	0	0	1433	912	32	2	322	2	BICD1	12	32369283	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	20463875	32369283	101482612	114	1920										
FGD4	0	genome.wustl.edu	37	chr12	32751440	32751440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccaatttttaggagactaatGagcaaaaacttcacaaaata	5	7	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	32751440	32751440	G	A	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	missense	c.610	p.E204K	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	105	0	0	134	20	12.99	-	-	-	A	32751440	G	A	32751440	3	1	36	1	0	0	0	0	1	0	0	0	5881	1291	45	2	620	2	FGD4	12	32751440	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	382157	32751440	101100455	115	1921										
C12orf40	0	genome.wustl.edu	37	chr12	40034769	40034769	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tttttcaggtccagggttctGatcaagcaggaaagaagaaa	11	6	3	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	40034769	40034769	G	C	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	silent	c.36	p.L12	1.000	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	90	0	0	225	36	13.79	-	-	-	C	40034769	G	C	40034769	2	2	36	1	0	0	0	0	0	0	0	1	1698	1277	45	2		2	C12orf40	12	40034769	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7283329	40034769	93817126	116	1922										
PPHLN1	0	genome.wustl.edu	37	chr12	42835152	42835152	+	Frame_Shift_Del	DEL	G	G	-													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgtgaaactttcgggatggtGgtgaaaatgctgattgaaaa							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	42835152	42835152	G	-	DEL	PPHLN1	ENST00000395568	human	ensembl	69_37n	1	known	frame_shift_del	c.945	p.V316fs	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	197	0	0	218	25	10.29	-	-	-	-	42835152	G	-	42835152	7	5	36	1	0	1	0	1	0	0	0	0	12388	1335	47	0	1016	0	PPHLN1	12	42835152	Frame_Shift_Del	DEL	G	TCGA-A2-A0CX-01A-21W-A019-09	2800383	42835152	91016743	117	1923										
TUBA1B	0	genome.wustl.edu	37	chr12	49521752	49521752	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aatggataattagtattcctCtccttcttcctcaccctctc	3	14	4	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	49521752	49521752	C	G	SNP	TUBA1B	ENST00000336023	human	ensembl	69_37n	-1	known	missense	c.1345	p.E449Q	1.000	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416	152	0	0	76	13	14.61	-	-	-	G	49521752	C	G	49521752	3	3	36	1	0	0	0	0	1	0	0	0	16841	922	32	2	14	2	TUBA1B	12	49521752	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	6686600	49521752	84330143	118	1924										
CALCOCO1	0	genome.wustl.edu	37	chr12	54109013	54109013	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atccttctcccgggccagctCagtcttgaacacttggtttt	8	13	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	54109013	54109013	C	A	SNP	CALCOCO1	ENST00000550804	human	ensembl	69_37n	-1	known	nonsense	c.1357	p.E453*	0.950	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822	306	0	0	247	41	14.24	-	-	-	A	54109013	C	A	54109013	4	1	36	1	0	0	0	0	0	1	0	0	2602	835	29	2	742	2	CALCOCO1	12	54109013	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	4587261	54109013	79742882	119	1925										
CS	0	genome.wustl.edu	37	chr12	56668617	56668617	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	taacttctcatctgacacatCtttgccaacttccttctgca	3	14	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	56668617	56668617	C	G	SNP	CS	ENST00000351328	human	ensembl	69_37n	-1	known	missense	c.964	p.D322H	1.000	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,tigrfam_Citrate_synthase_euk	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,prints_Citrate_synthase-like,tigrfam_Citrate_synthase_euk	-	no_errors	CS	HGNC	ENSG00000062485	217	0	0	175	21	10.71	-	-	-	G	56668617	C	G	56668617	3	3	36	1	0	0	0	0	1	0	0	0	3954	913	32	2	448	2	CS	12	56668617	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	2559604	56668617	77183278	120	1926										
R3HDM2	0	genome.wustl.edu	37	chr12	57648837	57648837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gagctgcgtgaagagtttgtCcgcctcagtacgggtgatgc	15	9	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	57648837	57648837	C	T	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.2650	p.D884N	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	89	0	0	85	18	17.48	-	-	-	T	57648837	C	T	57648837	3	4	36	1	0	0	0	0	1	0	0	0	12971	855	30	2	284	2	R3HDM2	12	57648837	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	980220	57648837	76203058	121	1927										
DEPDC4	0	genome.wustl.edu	37	chr12	100657398	100657398	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caaattctaattccttttctTttttgaaaagcttcttcatt	2	8	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	100657398	100657398	T	G	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	missense	c.431	p.K144T	0.986	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	193	0	0	197	38	16.17	-	-	-	G	100657398	T	G	100657398	3	3	36	1	0	0	0	0	1	0	0	0	4477	1841	64	5	469	5	DEPDC4	12	100657398	Missense_Mutation	SNP	T	TCGA-A2-A0CX-01A-21W-A019-09	43008561	100657398	33194497	122	1928										
ALDH1L2	0	genome.wustl.edu	37	chr12	105425679	105425679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atcagtggatctgtcaagtgGatcaccaattttcatctttt	7	8	6	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	105425679	105425679	G	A	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.2278	p.P760S	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	206	1	0.48	201	31	13.36	-	-	-	A	105425679	G	A	105425679	3	1	36	1	0	0	0	0	1	0	0	0	495	1174	41	2	509	2	ALDH1L2	12	105425679	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	4768281	105425679	28426216	123	1929										
SART3	0	genome.wustl.edu	37	chr12	108920032	108920032	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aaatccccacggttgctgaaGatgggtcggatctggaccac	12	11	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	12	108920032	108920032	G	C	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.2214	p.I738M	0.985	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	191	0	0	122	33	21.29	-	-	-	C	108920032	G	C	108920032	3	2	36	1	0	0	0	0	1	0	0	0	13934	932	33	2	693	2	SART3	12	108920032	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	3494353	108920032	24931863	124	1930										
KL	0	genome.wustl.edu	37	chr13	33638166	33638166	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gggcccagaaactctggaaaGattttgtccagaagaattca	10	8	2	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	13	33638166	33638166	G	C	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	missense	c.2882	p.R961T	0.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	236	0	0	152	25	14.12	-	-	-	C	33638166	G	C	33638166	3	2	36	1	0	0	0	0	1	0	0	0	8384	942	33	2	2900	2	KL	13	33638166	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		33638166	81531712	125	1931										
ATP7B	0	genome.wustl.edu	37	chr13	52544779	52544779	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gcatggtttgcagggagcctCccagtgtggggagccacttc	15	11	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	13	52544779	52544779	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.1392	p.G464	0.000	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	284	0	0	168	42	20	-	-	-	T	52544779	C	T	52544779	2	4	36	1	0	0	0	0	0	0	0	1	1195	842	30	2		2	ATP7B	13	52544779	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	18906613	52544779	62625099	126	1932										
SLC10A2	0	genome.wustl.edu	37	chr13	103701763	103701763	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gtggaacatagctgcgtgttCtgcatccccgtttcaaaagc	10	11	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	13	103701763	103701763	C	T	SNP	SLC10A2	ENST00000245312	human	ensembl	69_37n	-1	known	silent	c.795	p.Q265	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255	74	0	0	99	15	13.16	-	-	-	T	103701763	C	T	103701763	2	4	36	1	0	0	0	0	0	0	0	1	14463	912	32	2		2	SLC10A2	13	103701763	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	51156984	103701763	11468115	127	1933										
EDDM3A	0	genome.wustl.edu	37	chr14	21216105	21216105	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gagagcagaagcttcagctaCattgaattccattgtggcgt	11	8	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	14	21216105	21216105	C	T	SNP	EDDM3A	ENST00000326842	human	ensembl	69_37n	1	known	silent	c.366	p.Y122	0.002	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562	194	0	0	146	22	13.1	-	-	-	T	21216105	C	T	21216105	2	4	36	1	0	0	0	0	0	0	0	1	4944	489	17	4		4	EDDM3A	14	21216105	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		21216105	86133435	128	1934										
ARHGAP5	0	genome.wustl.edu	37	chr14	32623834	32623834	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttcataatttcagggttagtCagcaacataaaatcaaccta	5	8	4	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	14	32623834	32623834	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	nonsense	c.4189	p.Q1397*	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	59	0	0	80	42	34.43	-	-	-	T	32623834	C	T	32623834	4	4	36	1	0	0	0	0	0	1	0	0	888	827	29	2	4211	2	ARHGAP5	14	32623834	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	11407729	32623834	74725706	129	1935										
CCDC88C	0	genome.wustl.edu	37	chr14	91779976	91779976	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cgctccagctgctggttctcCctctccatctgtgccagctt	8	17	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	14	91779976	91779976	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	silent	c.2184	p.R728	0.100	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	106	1	0.93	67	15	18.29	-	-	-	T	91779976	C	T	91779976	2	4	36	1	0	0	0	0	0	0	0	1	2892	622	22	4		4	CCDC88C	14	91779976	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	59156142	91779976	15569564	130	1936										
CDC42BPB	0	genome.wustl.edu	37	chr14	103434954	103434954	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctcacgtctgaccaattcctCttcataaaataagactttct	3	12	5	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	14	103434954	103434954	C	G	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.2095	p.E699Q	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	138	0	0	64	12	15.79	-	-	-	G	103434954	C	G	103434954	3	3	36	1	0	0	0	0	1	0	0	0	3102	922	32	2	3132	2	CDC42BPB	14	103434954	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	11654978	103434954	3914586	131	1937										
DENND4A	0	genome.wustl.edu	37	chr15	65962379	65962379	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcgtcttaaatctcttatttCtatattcagaaagggtaaga	6	6	4	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	15	65962379	65962379	C	G	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	missense	c.4609	p.E1537Q	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485	42	0	0	26	10	27.78	-	-	-	G	65962379	C	G	65962379	3	3	36	1	0	0	0	0	1	0	0	0	4469	922	32	2	1143	2	DENND4A	15	65962379	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		65962379	36569013	132	1938										
TEKT5	0	genome.wustl.edu	37	chr16	10721461	10721461	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caggtgtggcccaccaggcgCggggtgcaggggaaggtctt	19	10	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	10721461	10721461	C	T	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	silent	c.1437	p.P479	0.172	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	55	0	0	28	21	40.38	-	-	-	T	10721461	C	T	10721461	2	4	36	1	0	0	0	0	0	0	0	1	15851	755	27	1		1	TEKT5	16	10721461	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		10721461	79633292	133	1939										
ZC3H7A	0	genome.wustl.edu	37	chr16	11868331	11868331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atgagaaaaactgggtgccgGtaaagagacaacaggaactg	13	6	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	11868331	11868331	G	A	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.664	p.P222S	0.253	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	153	0	0	210	27	11.39	-	-	-	A	11868331	G	A	11868331	3	1	36	1	0	0	0	0	1	0	0	0	17668	1261	44	4	2311	4	ZC3H7A	16	11868331	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1146870	11868331	78486422	134	1940										
MKL2	0	genome.wustl.edu	37	chr16	14340567	14340567	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cagtctctactctcaaggcaGaattgccacctacaggaacc	7	14	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	14340567	14340567	G	C	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.1417	p.E473Q	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	268	0	0	264	35	11.71	-	-	-	C	14340567	G	C	14340567	3	2	36	1	0	0	0	0	1	0	0	0	9673	943	33	2	1488	2	MKL2	16	14340567	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	2472236	14340567	76014186	135	1941										
NOMO1	0	genome.wustl.edu	37	chr16	14978247	14978247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggttgggaataatgacatcGatgatgtaaacatcatagtt	10	4	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	14978247	14978247	G	A	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.3130	p.D1044N	1.000	superfamily_Carb-bd-like_fold	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	220	1	0.45	186	53	22.08	-	-	-	A	14978247	G	A	14978247	3	1	36	1	0	0	0	0	1	0	0	0	10603	1058	37	1	3236	1	NOMO1	16	14978247	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	637680	14978247	75376506	136	1942										
ABCC1	0	genome.wustl.edu	37	chr16	16200631	16200631	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcctcctatagtggggacatCagcaggcaccacaacagcac	9	14	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	16200631	16200631	C	T	SNP	ABCC1	ENST00000572882	human	ensembl	69_37n	1	novel	nonsense	c.2497	p.Q833*	0.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCC1	HGNC	ENSG00000103222	116	0	0	98	14	12.5	-	-	-	T	16200631	C	T	16200631	4	4	36	1	0	0	0	0	0	1	0	0	49	816	29	2	2854	2	ABCC1	16	16200631	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1222384	16200631	74154122	137	1943										
SETD1A	0	genome.wustl.edu	37	chr16	30970121	30970121	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tggcggaactacaagctcatCgtggatcctgccttggaccc	11	13	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	30970121	30970121	C	T	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	silent	c.69	p.I23	0.998	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	186	0	0	127	31	19.62	-	-	-	T	30970121	C	T	30970121	2	4	36	1	0	0	0	0	0	0	0	1	14218	874	31	1		1	SETD1A	16	30970121	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	14769490	30970121	59384632	138	1944										
ABCC12	0	genome.wustl.edu	37	chr16	48139206	48139206	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atgtctgccagcaccgcgccGacctcacacatggtcctgtt	9	16	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	48139206	48139206	G	A	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	silent	c.2517	p.V839	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	36	0	0	28	4	12.5	-	-	-	A	48139206	G	A	48139206	2	1	36	1	0	0	0	0	0	0	0	1	52	1045	37	1		1	ABCC12	16	48139206	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	17169085	48139206	42215547	139	1945										
NOB1	0	genome.wustl.edu	37	chr16	69788555	69788555	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agctcgtagggcaggacagcGagccgcctgcgtgtggcctt	16	12	0	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	69788555	69788555	G	C	SNP	NOB1	ENST00000268802	human	ensembl	69_37n	-1	known	silent	c.138	p.L46	1.000	smart_PINc_nuc-bd,pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PINc_nuc-bd,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101	69	0	0	21	7	25	-	-	-	C	69788555	G	C	69788555	2	2	36	1	0	0	0	0	0	0	0	1	10583	1045	37	3		3	NOB1	16	69788555	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	21649349	69788555	20566198	140	1946										
HYDIN	0	genome.wustl.edu	37	chr16	70889175	70889175	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gcacagtctccctggcttctCtgcctgaggaggaaacacca	10	14	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	70889175	70889175	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.12296	p.R4099K	0.998	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	234	0	0	151	50	24.88	-	-	-	T	70889175	C	T	70889175	3	4	36	1	0	0	0	0	1	0	0	0	7521	913	32	2	3122	2	HYDIN	16	70889175	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1100620	70889175	19465578	141	1947										
ZNF23	0	genome.wustl.edu	37	chr16	71482893	71482893	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctaagctgggagctgcacctGaagccttttccacattcatt	8	12	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	71482893	71482893	G	A	SNP	ZNF23	ENST00000357254	human	ensembl	69_37n	-1	known	silent	c.1035	p.F345	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377	253	1	0.39	156	19	10.86	-	-	-	A	71482893	G	A	71482893	2	1	36	1	0	0	0	0	0	0	0	1	17879	1281	45	2		2	ZNF23	16	71482893	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	593718	71482893	18871860	142	1948										
ZFHX3	0	genome.wustl.edu	37	chr16	72830478	72830478	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tggtggtggctctggggtctGgggcctcagtgggtacagtt	19	7	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	72830478	72830478	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.6103	p.Q2035*	0.998	superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	175	0	0	84	28	25	-	-	-	A	72830478	G	A	72830478	4	1	36	1	0	0	0	0	0	1	0	0	17730	1357	47	4	5016	4	ZFHX3	16	72830478	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1347585	72830478	17524275	143	1949										
WWOX	0	genome.wustl.edu	37	chr16	78458774	78458774	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttttatttttcaggcctcttCatgtgcttgtgtgcaacgca	8	9	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	16	78458774	78458774	C	T	SNP	WWOX	ENST00000566780	human	ensembl	69_37n	1	known	missense	c.613	p.H205Y	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_WW_Rsp5_WWP,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153	483	0	0	309	95	23.51	-	-	-	T	78458774	C	T	78458774	3	4	36	1	0	0	0	0	1	0	0	0	17511	826	29	2	701	2	WWOX	16	78458774	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	5628296	78458774	11895979	144	1950										
CAMTA2	0	genome.wustl.edu	37	chr17	4876514	4876514	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cacgttgagcgggtcaacctCctgctctaagtccaagcttc	9	14	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	4876514	4876514	C	G	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.2305	p.E769Q	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	152	0	0	82	21	20.39	-	-	-	G	4876514	C	G	4876514	3	3	36	1	0	0	0	0	1	0	0	0	2639	864	30	2	1462	2	CAMTA2	17	4876514	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		4876514	76318696	145	1951										
RABEP1	0	genome.wustl.edu	37	chr17	5235303	5235303	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aagatgatttgggacaccttCgaacccagctgtgggaagct	12	9	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	5235303	5235303	C	T	SNP	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	nonsense	c.223	p.R75*	1.000	NULL	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	133	0	0	106	23	17.83	-	-	-	T	5235303	C	T	5235303	4	4	36	1	0	0	0	0	0	1	0	0	13044	876	31	1	233	1	RABEP1	17	5235303	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	358789	5235303	75959907	146	1952										
PER1	0	genome.wustl.edu	37	chr17	8053552	8053552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cgtacctgcagccactggtgGacgggttgtcctgctctgag	14	12	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	8053552	8053552	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.359	p.S120F	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	98	0	0	33	8	19.51	-	-	-	A	8053552	G	A	8053552	3	1	36	1	0	0	0	0	1	0	0	0	11802	1174	41	2	3597	2	PER1	17	8053552	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	2818249	8053552	73141658	147	1953										
TOP2A	0	genome.wustl.edu	37	chr17	38569453	38569453	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	acttatttacttgcctgtttGaacattttcttgtattctct	4	8	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	38569453	38569453	G	C	SNP	TOP2A	ENST00000423485	human	ensembl	69_37n	-1	known	missense	c.570	p.F190L	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2A	HGNC	ENSG00000131747	21	0	0	22	7	24.14	-	-	-	C	38569453	G	C	38569453	3	2	36	1	0	0	0	0	1	0	0	0	16461	1281	45	2	4145	2	TOP2A	17	38569453	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	30515901	38569453	42625757	148	1954										
MBTD1	0	genome.wustl.edu	37	chr17	49280258	49280258	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttgtcaaccacttctactctCatgcaaggtttgaaaggata	7	9	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	49280258	49280258	C	G	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.867	p.M289I	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	105	0	0	189	30	13.7	-	-	-	G	49280258	C	G	49280258	3	3	36	1	0	0	0	0	1	0	0	0	9431	826	29	2	1051	2	MBTD1	17	49280258	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	10710805	49280258	31914952	149	1955										
BRIP1	0	genome.wustl.edu	37	chr17	59876540	59876540	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gttgaccatactatctagttCatcccgagcaaaccgaagct	7	12	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	59876540	59876540	C	G	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.1261	p.E421Q	1.000	smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	146	0	0	262	100	27.62	-	-	-	G	59876540	C	G	59876540	3	3	36	1	0	0	0	0	1	0	0	0	1522	835	29	2	2536	2	BRIP1	17	59876540	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	10596282	59876540	21318670	150	1956										
TLK2	0	genome.wustl.edu	37	chr17	60654101	60654101	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cagaataccatgaacaagaaGaaatcttcaaactcagatta	5	8	3	5			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	60654101	60654101	G	C	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	1	known	missense	c.1219	p.E407Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	91	0	0	136	21	13.29	-	-	-	C	60654101	G	C	60654101	3	2	36	1	0	0	0	0	1	0	0	0	16039	943	33	2	1199	2	TLK2	17	60654101	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	777561	60654101	20541109	151	1957										
DDX5	0	genome.wustl.edu	37	chr17	62499308	62499308	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atttcaaaggacacttactcTtatttgatccacaatcttcc	3	11	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	62499308	62499308	T	G	SNP	DDX5	ENST00000579996	human	ensembl	69_37n	-1	putative	nonstop	c.165	p.*55Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfscan_Helicase_ATP-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX5	HGNC	ENSG00000108654	325	0	0	291	44	13.13	-	-	-	G	62499308	T	G	62499308	4	3	36	1	0	0	0	0	0	0	0	0	4398	1617	56	5	1064	5	DDX5	17	62499308	Nonstop_Mutation	SNP	T	TCGA-A2-A0CX-01A-21W-A019-09	1845207	62499308	18695902	152	1958										
TSPAN10	0	genome.wustl.edu	37	chr17	79612316	79612317	+	Frame_Shift_Ins	INS	-	-	G													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gggtctctgggaagtgatctINSgggggggcccctgcccgcag							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	79612316	79612317	-	G	INS	TSPAN10	ENST00000328585	human	ensembl	69_37n	1	known	frame_shift_ins	c.335_336	p.P115fs	0.000:0.002	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612	21	0	0	18	3	14.29	-	-	-	G	79612317	-	G	79612316	7	5	36	1	0	1	1	0	0	0	0	0	16730	1580	55	0	341	0	TSPAN10	17	79612316	Frame_Shift_Ins	INS	-	TCGA-A2-A0CX-01A-21W-A019-09	17113008	79612316	1582894	153	1959										
ZNF750	0	genome.wustl.edu	37	chr17	80789153	80789153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttttggacccttccgtgtctCtctgcccagccttggaggag	11	13	2	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	17	80789153	80789153	C	T	SNP	ZNF750	ENST00000269394	human	ensembl	69_37n	-1	known	missense	c.1178	p.R393K	0.982	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579	84	0	0	98	12	10.91	-	-	-	T	80789153	C	T	80789153	3	4	36	1	0	0	0	0	1	0	0	0	18226	913	32	2	1001	2	ZNF750	17	80789153	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1176837	80789153	406057	154	1960										
CABYR	0	genome.wustl.edu	37	chr18	21736510	21736510	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttagtcccaaatctgtagtaGaaaagaccacctctggcatg	8	10	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	18	21736510	21736510	G	T	SNP	CABYR	ENST00000463087	human	ensembl	69_37n	1	known	nonsense	c.1045	p.E349*	0.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	190	0	0	124	28	18.42	-	-	-	T	21736510	G	T	21736510	4	4	36	1	0	0	0	0	0	1	0	0	2561	943	33	2	1055	2	CABYR	18	21736510	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		21736510	56340738	155	1961										
DNM2	0	genome.wustl.edu	37	chr19	10935742	10935742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cccgcttgcaggcagaaaacGaggatggggcccaggagaac	15	11	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	10935742	10935742	G	A	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	missense	c.1903	p.E635K	1.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	68	0	0	53	10	15.87	-	-	-	A	10935742	G	A	10935742	3	1	36	1	0	0	0	0	1	0	0	0	4707	1059	37	1	2116	1	DNM2	19	10935742	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		10935742	48193241	156	1962										
RGL3	0	genome.wustl.edu	37	chr19	11526649	11526649	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cggctcctcttcctgctctcGctcagcctcctccaaaaaat	5	18	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	11526649	11526649	G	A	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	nonsense	c.601	p.R201*	0.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	235	0	0	153	34	18.18	-	-	-	A	11526649	G	A	11526649	4	1	36	1	0	0	0	0	0	1	0	0	13361	1095	38	1	1609	1	RGL3	19	11526649	Nonsense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	590907	11526649	47602334	157	1963										
CNN1	0	genome.wustl.edu	37	chr19	11657670	11657670	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gagaacatcggcaacttcatCaaggccatcaccaagtatgg	9	11	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	11657670	11657670	C	G	SNP	CNN1	ENST00000252456	human	ensembl	69_37n	1	known	missense	c.276	p.I92M	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176	415	0	0	266	53	16.51	-	-	-	G	11657670	C	G	11657670	3	3	36	1	0	0	0	0	1	0	0	0	3639	816	29	2	290	2	CNN1	19	11657670	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	131021	11657670	47471313	158	1964										
IL27RA	0	genome.wustl.edu	37	chr19	14150608	14150608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggccctgacgtggacttttcCgaggatgaccccctggaggc	14	13	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	14150608	14150608	C	T	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	silent	c.420	p.S140	0.072	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	96	0	0	56	8	12.5	-	-	-	T	14150608	C	T	14150608	2	4	36	1	0	0	0	0	0	0	0	1	7735	639	23	1		1	IL27RA	19	14150608	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	2492938	14150608	44978375	159	1965										
PDE4C	0	genome.wustl.edu	37	chr19	18328995	18328995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ctggttggagaccccaggatGgtccacgtcgtggatggcgc	16	11	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	18328995	18328995	G	T	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	missense	c.1294	p.H432N	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	76	0	0	43	12	21.82	-	-	-	T	18328995	G	T	18328995	3	4	36	1	0	0	0	0	1	0	0	0	11714	1348	47	4	864	4	PDE4C	19	18328995	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	4178387	18328995	40799988	160	1966										
ZNF208	0	genome.wustl.edu	37	chr19	22154006	22154006	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cacatttctagagtttctctCcagtatgaattttcttatgt	5	8	3	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	22154006	22154006	C	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.3830	p.G1277A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	217	0	0	310	60	16.22	-	-	-	G	22154006	C	G	22154006	3	3	36	1	0	0	0	0	1	0	0	0	17862	855	30	2	16	2	ZNF208	19	22154006	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	3825011	22154006	36974977	161	1967										
MAP3K10	0	genome.wustl.edu	37	chr19	40704438	40704438	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggttatccgtctctccctctTctccaaaagcagtgatgtct	7	13	4	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	40704438	40704438	T	A	SNP	MAP3K10	ENST00000253055	human	ensembl	69_37n	1	known	missense	c.839	p.F280Y	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758	36	0	0	19	5	20.83	-	-	-	A	40704438	T	A	40704438	3	1	36	1	0	0	0	0	1	0	0	0	9315	1783	62	5	845	5	MAP3K10	19	40704438	Missense_Mutation	SNP	T	TCGA-A2-A0CX-01A-21W-A019-09	18550432	40704438	18424545	162	1968										
CD3EAP	0	genome.wustl.edu	37	chr19	45912334	45912334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccatggcgcctcaacagccaGaaggagcgaagcctcaggcc	12	15	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	45912334	45912334	G	A	SNP	CD3EAP	ENST00000589804	human	ensembl	69_37n	1	known	missense	c.1114	p.E372K	0.000	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877	95	0	0	73	13	15.12	-	-	-	A	45912334	G	A	45912334	3	1	36	1	0	0	0	0	1	0	0	0	3041	943	33	2	1118	2	CD3EAP	19	45912334	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	5207896	45912334	13216649	163	1969										
CACNG6	0	genome.wustl.edu	37	chr19	54502978	54502978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	catcatggtgctcagtaaagGtgcagagttcctgctccgag	12	10	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	54502978	54502978	G	A	SNP	CACNG6	ENST00000252729	human	ensembl	69_37n	1	known	missense	c.497	p.G166D	0.979	NULL	prints_VDCC_g6su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG6	HGNC	ENSG00000130433	304	1	0.33	144	28	16.28	-	-	-	A	54502978	G	A	54502978	3	1	36	1	0	0	0	0	1	0	0	0	2586	1261	44	4	507	4	CACNG6	19	54502978	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	8590644	54502978	4626005	164	1970										
VSTM1	0	genome.wustl.edu	37	chr19	54545444	54545444	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tcttggtggattcctcagatGatgaacctacaaaaaatgca	8	8	2	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	54545444	54545444	G	A	SNP	VSTM1	ENST00000338372	human	ensembl	69_37n	-1	known	missense	c.494	p.S165L	0.012	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM1	HGNC	ENSG00000189068	245	0	0	166	31	15.74	-	-	-	A	54545444	G	A	54545444	3	1	36	1	0	0	0	0	1	0	0	0	17325	1294	45	2	232	2	VSTM1	19	54545444	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	42466	54545444	4583539	165	1971										
NLRP11	0	genome.wustl.edu	37	chr19	56321506	56321506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttataacaatagtttttccaGatgctctctctcccatcagg	5	11	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	56321506	56321506	G	C	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.470	p.S157C	0.004	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	119	0	0	82	43	34.4	-	-	-	C	56321506	G	C	56321506	3	2	36	1	0	0	0	0	1	0	0	0	10545	942	33	2	2663	2	NLRP11	19	56321506	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1776062	56321506	2807477	166	1972										
NLRP4	0	genome.wustl.edu	37	chr19	56363563	56363563	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atgactttgcagcttgaactCaagcagattccctggactga	9	10	1	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	56363563	56363563	C	G	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	silent	c.117	p.L39	0.003	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	348	0	0	268	67	20	-	-	-	G	56363563	C	G	56363563	2	3	36	1	0	0	0	0	0	0	0	1	10551	813	29	2		2	NLRP4	19	56363563	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	42057	56363563	2765420	167	1973										
NLRP4	0	genome.wustl.edu	37	chr19	56363675	56363675	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	acataaccttaagaatctttCaaaagatggatagaaaggat	7	5	2	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	56363675	56363675	C	G	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	missense	c.229	p.Q77E	0.002	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	252	0	0	204	49	19.29	-	-	-	G	56363675	C	G	56363675	3	3	36	1	0	0	0	0	1	0	0	0	10551	827	29	2	231	2	NLRP4	19	56363675	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	112	56363675	2765308	168	1974										
NLRP8	0	genome.wustl.edu	37	chr19	56459312	56459312	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgacacccccattcccttttCatcctcctccactcacagtt	2	19	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	19	56459312	56459312	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.44	p.S15L	0.004	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	226	0	0	221	51	18.75	-	-	-	T	56459312	C	T	56459312	3	4	36	1	0	0	0	0	1	0	0	0	10555	838	29	2	46	2	NLRP8	19	56459312	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	95637	56459312	2669671	169	1975										
PANK2	0	genome.wustl.edu	37	chr20	3888593	3888593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tttttccatggtttggactgGatatcggtggaactctggtc	12	7	1	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	3888593	3888593	G	C	SNP	PANK2	ENST00000316562	human	ensembl	69_37n	1	known	missense	c.649	p.D217H	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK2	HGNC	ENSG00000125779	116	0	0	100	15	13.04	-	-	-	C	3888593	G	C	3888593	3	2	36	1	0	0	0	0	1	0	0	0	11490	1174	41	2	655	2	PANK2	20	3888593	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09		3888593	59136927	170	1976										
HAO1	0	genome.wustl.edu	37	chr20	7915161	7915161	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggcaagctcgccgtccacatGagccatgcgctgcatggccg	13	15	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	7915161	7915161	G	A	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	missense	c.259	p.H87Y	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	84	0	0	120	14	10.45	-	-	-	A	7915161	G	A	7915161	3	1	36	1	0	0	0	0	1	0	0	0	7002	1290	45	2	881	2	HAO1	20	7915161	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	4026568	7915161	55110359	171	1977										
CBFA2T2	0	genome.wustl.edu	37	chr20	32199100	32199100	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttggcaatgacatctcccctGagattggggagaaggtgcgg	15	8	1	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	32199100	32199100	G	A	SNP	CBFA2T2	ENST00000346541	human	ensembl	69_37n	1	known	missense	c.406	p.E136K	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699	135	0	0	199	33	14.22	-	-	-	A	32199100	G	A	32199100	3	1	36	1	0	0	0	0	1	0	0	0	2722	1291	45	2	454	2	CBFA2T2	20	32199100	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	24283939	32199100	30826420	172	1978										
NCOA6	0	genome.wustl.edu	37	chr20	33329945	33329945	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tgggactgaccaatacatttCtcggcaactccacattctgc	7	13	2	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	33329945	33329945	C	G	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.4115	p.R1372T	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	168	1	0.59	158	30	15.96	-	-	-	G	33329945	C	G	33329945	3	3	36	1	0	0	0	0	1	0	0	0	10305	913	32	2	2096	2	NCOA6	20	33329945	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1130845	33329945	29695575	173	1979										
CEP250	0	genome.wustl.edu	37	chr20	34086459	34086459	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggagcctctttaagagagggCccctgctgactgctctctcc	11	14	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	34086459	34086459	C	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.3691	p.P1231T	0.695	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	232	0	0	195	33	14.41	-	-	-	A	34086459	C	A	34086459	3	1	36	1	0	0	0	0	1	0	0	0	3281	739	26	4	3785	4	CEP250	20	34086459	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	756514	34086459	28939061	174	1980										
C20orf118	0	genome.wustl.edu	37	chr20	35507575	35507576	+	Frame_Shift_Ins	INS	-	-	C													0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	gcgggccagtgctgctggtgINSctcagggaccaggacgggca							TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	35507575	35507576	-	C	INS	C20orf118	ENST00000217320	human	ensembl	69_37n	1	known	frame_shift_ins	c.321_322	p.L107fs	0.998:0.999	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	C20orf118	HGNC	ENSG00000101342	62	0	0	67	9	11.84	-	-	-	C	35507576	-	C	35507575	7	5	36	1	0	1	1	0	0	0	0	0	2104	1306	46	0	331	0	C20orf118	20	35507575	Frame_Shift_Ins	INS	-	TCGA-A2-A0CX-01A-21W-A019-09	1421116	35507575	27517945	175	1981										
RBPJL	0	genome.wustl.edu	37	chr20	43943089	43943089	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	caaaacagtgtgcgctccttGatgtggatgagcccatctcc	10	12	1	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	43943089	43943089	G	C	SNP	RBPJL	ENST00000343694	human	ensembl	69_37n	1	known	missense	c.904	p.D302H	0.998	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232	214	0	0	149	23	13.37	-	-	-	C	43943089	G	C	43943089	3	2	36	1	0	0	0	0	1	0	0	0	13245	1290	45	2	938	2	RBPJL	20	43943089	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	8435514	43943089	19082431	176	1982										
SLC13A3	0	genome.wustl.edu	37	chr20	45212300	45212300	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccacgccggtgacagcatcaGaaagaaacctacaatgagaa	9	11	1	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	20	45212300	45212300	G	T	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1130	p.S377Y	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	91	0	0	89	14	13.59	-	-	-	T	45212300	G	T	45212300	3	4	36	1	0	0	0	0	1	0	0	0	14482	942	33	2	698	2	SLC13A3	20	45212300	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1269211	45212300	17813220	177	1983										
BID	0	genome.wustl.edu	37	chr22	18220787	18220787	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cctcaagggttcttacatttCtggctaagctcctcacgtag	8	12	4	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	22	18220787	18220787	C	T	SNP	BID	ENST00000317361	human	ensembl	69_37n	-1	known	missense	c.710	p.R237K	0.220	pfam_BID	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475	39	0	0	31	5	13.89	-	-	-	T	18220787	C	T	18220787	3	4	36	1	0	0	0	0	1	0	0	0	1435	913	32	2	23	2	BID	22	18220787	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		18220787	33083779	178	1984										
UFD1L	0	genome.wustl.edu	37	chr22	19462608	19462608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	tactgagttggtccagggccGagggtggcataattactgtg	15	7	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	22	19462608	19462608	G	A	SNP	UFD1L	ENST00000263202	human	ensembl	69_37n	-1	known	missense	c.152	p.S51L	1.000	pfam_UFD1	pfam_UFD1	-	no_errors	UFD1L	HGNC	ENSG00000070010	182	1	0.55	136	17	11.04	-	-	-	A	19462608	G	A	19462608	3	1	36	1	0	0	0	0	1	0	0	0	17032	1059	37	1	811	1	UFD1L	22	19462608	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	1241821	19462608	31841958	179	1985										
EWSR1	0	genome.wustl.edu	37	chr22	29693828	29693828	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ttgttccagggaaagattttCaagggagcaaacttaaagtc	10	6	1	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	22	29693828	29693828	C	T	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	nonsense	c.1321	p.Q441*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	162	0	0	97	18	15.65	-	-	-	T	29693828	C	T	29693828	4	4	36	1	0	0	0	0	0	1	0	0	5332	827	29	2	1473	2	EWSR1	22	29693828	Nonsense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	10231220	29693828	21610738	180	1986										
ACO2	0	genome.wustl.edu	37	chr22	41865178	41865178	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cctacagcctactggtgactCggctgcaggtgagcgagctc	13	13	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	22	41865178	41865178	C	G	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	missense	c.28	p.R10G	1.000	NULL	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	29	0	0	13	6	31.58	-	-	-	G	41865178	C	G	41865178	3	3	36	1	0	0	0	0	1	0	0	0	147	875	31	3	30	3	ACO2	22	41865178	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	12171350	41865178	9439388	181	1987										
SBF1	0	genome.wustl.edu	37	chr22	50893515	50893515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	cgggacacatggtggtagccGaggaacttgaggtagaactg	16	7	0	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	22	50893515	50893515	G	A	SNP	SBF1	ENST00000418590	human	ensembl	69_37n	-1	putative	missense	c.211	p.R71W	0.996	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SBF1	HGNC	ENSG00000100241	20	0	0	20	7	25.93	-	-	-	A	50893515	G	A	50893515	3	1	36	1	0	0	0	0	1	0	0	0	13945	1045	37	1	1102	1	SBF1	22	50893515	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	9028337	50893515	411051	182	1988										
EFHC2	0	genome.wustl.edu	37	chrX	44120503	44120503	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agtataaaactgatcctcatCaggaggcggaagagtaatcc	10	8	2	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	44120503	44120503	C	T	SNP	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	missense	c.424	p.D142N	0.571	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	244	0	0	277	40	12.58	-	-	-	T	44120503	C	T	44120503	3	4	36	1	0	0	0	0	1	0	0	0	4982	826	29	2	1873	2	EFHC2	23	44120503	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09		44120503	111150057	183	1989										
KDM5C	0	genome.wustl.edu	37	chrX	53225908	53225908	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggctttctcctcccagcgttCagcaatggtcagcagttcct	9	14	3	0			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	53225908	53225908	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.2941	p.E981K	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	129	0	0	79	12	13.19	-	-	-	T	53225908	C	T	53225908	3	4	36	1	0	0	0	0	1	0	0	0	8188	835	29	2	1871	2	KDM5C	23	53225908	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	9105405	53225908	102044652	184	1990										
MAGED2	0	genome.wustl.edu	37	chrX	54841887	54841887	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccctgggccaaagcccggatCcaggcgggagcagaagctaa	14	13	0	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	54841887	54841887	C	T	SNP	MAGED2	ENST00000218439	human	ensembl	69_37n	1	known	silent	c.1593	p.I531	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	59	0	0	47	10	17.54	-	-	-	T	54841887	C	T	54841887	2	4	36	1	0	0	0	0	0	0	0	1	9255	845	30	2		2	MAGED2	23	54841887	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	1615979	54841887	100428673	185	1991										
ZXDB	0	genome.wustl.edu	37	chrX	57620855	57620855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	atggttctcagaaagaaacaGatcttatcactgtgactggc	9	8	3	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	57620855	57620855	G	C	SNP	ZXDB	ENST00000374888	human	ensembl	69_37n	1	known	missense	c.2374	p.D792H	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	178	0	0	172	20	10.36	-	-	-	C	57620855	G	C	57620855	3	2	36	1	0	0	0	0	1	0	0	0	18342	942	33	2	2376	2	ZXDB	23	57620855	Missense_Mutation	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	2778968	57620855	97649705	186	1992										
MED12	0	genome.wustl.edu	37	chrX	70340837	70340837	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ccagaatggactcagatcatCaccaagtacttatgggagca	9	10	3	2			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	70340837	70340837	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	silent	c.570	p.I190	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	264	0	0	163	31	15.82	-	-	-	T	70340837	C	T	70340837	2	4	36	1	0	0	0	0	0	0	0	1	9499	816	29	2		2	MED12	23	70340837	Silent	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	12719982	70340837	84929723	187	1993										
ZCCHC5	0	genome.wustl.edu	37	chrX	77913174	77913174	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	aggaactcaggaagcttctgGgaatctccactgaaggttaa	11	8	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	77913174	77913174	G	T	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	silent	c.744	p.S248	0.000	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	57	0	0	91	17	15.74	-	-	-	T	77913174	G	T	77913174	2	4	36	1	0	0	0	0	0	0	0	1	17687	1219	43	4		4	ZCCHC5	23	77913174	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	7572337	77913174	77357386	188	1994										
BTK	0	genome.wustl.edu	37	chrX	100615648	100615648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agctgtagatcatttgcattCattggcatgtaatcataaag	8	6	3	1			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	100615648	100615648	C	G	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.684	p.M228I	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	221	0	0	179	34	15.96	-	-	-	G	100615648	C	G	100615648	3	3	36	1	0	0	0	0	1	0	0	0	1566	826	29	2	1343	2	BTK	23	100615648	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	22702474	100615648	54654912	189	1995										
TCEAL2	0	genome.wustl.edu	37	chrX	101381908	101381908	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	agccagaagtagcttgtattCtggaagacaagaagttagaa	11	5	1	4			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	101381908	101381908	C	G	SNP	TCEAL2	ENST00000329035	human	ensembl	69_37n	1	known	missense	c.106	p.L36V	0.000	NULL	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905	337	1	0.3	319	60	15.83	-	-	-	G	101381908	C	G	101381908	3	3	36	1	0	0	0	0	1	0	0	0	15766	912	32	2	108	2	TCEAL2	23	101381908	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	766260	101381908	53888652	190	1996										
MCF2	0	genome.wustl.edu	37	chrX	138727745	138727745	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	accgagattttttggagagaGattttgagagaagaccatgt	12	4	0	6			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	138727745	138727745	G	A	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	silent	c.468	p.I156	0.639	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	44	0	0	91	18	16.51	-	-	-	A	138727745	G	A	138727745	2	1	36	1	0	0	0	0	0	0	0	1	9449	932	33	2		2	MCF2	23	138727745	Silent	SNP	G	TCGA-A2-A0CX-01A-21W-A019-09	37345837	138727745	16542815	191	1997										
GAB3	0	genome.wustl.edu	37	chrX	153940741	153940741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53125	102	3.99274006058603e-35	3.75207140855782	4.5797342192691	3.37454100367197	0.00196110049173085	0.0416947017589733	75	ggtggaacttaaggaactttCcagcaatggtgaagaagaca	12	6	0	3			TCGA-A2-A0CX-01A-21W-A019-09	TCGA-A2-A0CX-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	975adb76-3561-41a0-959a-68da470816c7	dd43a88d-fd04-4ce4-8bac-1478975304aa	X	153940741	153940741	C	T	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.832	p.E278K	0.699	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	174	0	0	189	31	14.03	-	-	-	T	153940741	C	T	153940741	3	4	36	1	0	0	0	0	1	0	0	0	6199	864	30	2	959	2	GAB3	23	153940741	Missense_Mutation	SNP	C	TCGA-A2-A0CX-01A-21W-A019-09	15212996	153940741	1329819	192	1998										
FAM73A	0	genome.wustl.edu	37	chr1	78269078	78269078	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taaatattcaggttctgcacAgagtttggcctctgtaagta	9	7	3	1			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	1	78269078	78269078	A	T	SNP	FAM73A	ENST00000370791	human	ensembl	69_37n	1	known	missense	c.497	p.Q166L	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	81	0	0	61	11	15.28	-	-	-	T	78269078	A	T	78269078	3	4	37	1	0	0	0	0	1	0	0	0	5662	188	7	5	511	5	FAM73A	1	78269078	Missense_Mutation	SNP	A	TCGA-A2-A0CZ-01A-11W-A050-09		78269078	170981543	1	1999										
ALLC	0	genome.wustl.edu	37	chr2	3721691	3721691	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tttgcaacagatgactttttTgctcctgcagaaaacctcat	6	10	1	3			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	2	3721691	3721691	T	C	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	1	known	silent	c.60	p.F20	1.000	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	139	0	0	96	16	14.29	-	-	-	C	3721691	T	C	3721691	2	2	37	1	0	0	0	0	0	0	0	1	534	1809	63	5		5	ALLC	2	3721691	Silent	SNP	T	TCGA-A2-A0CZ-01A-11W-A050-09		3721691	239477682	2	2000										
TMPRSS7	0	genome.wustl.edu	37	chr3	111766802	111766802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccttttgcccatccggagcaGcatcttgtacaggtacgatg	10	12	1	0			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	3	111766802	111766802	G	A	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	missense	c.569	p.S190N	0.472	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	145	0	0	85	11	11.34	-	-	-	A	111766802	G	A	111766802	3	1	37	1	0	0	0	0	1	0	0	0	16347	971	34	4	583	4	TMPRSS7	3	111766802	Missense_Mutation	SNP	G	TCGA-A2-A0CZ-01A-11W-A050-09		111766802	86255628	3	2001										
FAM53C	0	genome.wustl.edu	37	chr5	137682473	137682474	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	ccatggttcatggcctgtagINSccccccacccctctctgctt							TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	5	137682473	137682474	-	C	INS	FAM53C	ENST00000239906	human	ensembl	69_37n	1	known	frame_shift_ins	c.1004_1005	p.P338fs	1.000:1.000	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	55	0	0	25	4	13.79	-	-	-	C	137682474	-	C	137682473	7	5	37	1	0	1	1	0	0	0	0	0	5627	971	34	0	1018	0	FAM53C	5	137682473	Frame_Shift_Ins	INS	-	TCGA-A2-A0CZ-01A-11W-A050-09		137682473	43232787	4	2002										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32632633	32632633	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttgtgtctgcacaccgtgtcCaactccgcccgggtcccctc	9	18	1	0			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	6	32632633	32632633	C	T	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	0.893	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	130	0	0	88	32	26.67	-	-	-	T	32632633	C	T	32632633	2	4	37	1	0	0	0	0	0	0	0	1	7257	593	21	4		4	HLA-DQB1	6	32632633	Silent	SNP	C	TCGA-A2-A0CZ-01A-11W-A050-09		32632633	138482434	5	2003										
TMEM132B	0	genome.wustl.edu	37	chr12	125834676	125834676	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgggagaacaatatccactCgggcctggagagcccccagc	13	13	0	2			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	12	125834676	125834676	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	nonsense	c.731	p.S244*	0.085	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	199	0	0	126	17	11.89	-	-	-	A	125834676	C	A	125834676	4	1	37	1	0	0	0	0	0	1	0	0	16141	893	31	3	737	3	TMEM132B	12	125834676	Nonsense_Mutation	SNP	C	TCGA-A2-A0CZ-01A-11W-A050-09		125834676	8017219	6	2004										
SEMA6D	0	genome.wustl.edu	37	chr15	48056083	48056083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tggcccgcatatgtaaaaacGacatgggtggttcccagcgg	13	10	0	0			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	15	48056083	48056083	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	1	known	missense	c.784	p.D262N	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	390	1	0.26	257	31	10.76	-	-	-	A	48056083	G	A	48056083	3	1	37	1	0	0	0	0	1	0	0	0	14130	1058	37	1	818	1	SEMA6D	15	48056083	Missense_Mutation	SNP	G	TCGA-A2-A0CZ-01A-11W-A050-09		48056083	54475309	7	2005										
TLN2	0	genome.wustl.edu	37	chr15	62999439	62999439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctctccacctcccagcttgTggcatgtgccaaggtaagcc	9	16	1	0			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	15	62999439	62999439	T	C	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.2159	p.V720A	1.000	pfam_ILWEQ	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	83	0	0	73	10	11.9	-	-	-	C	62999439	T	C	62999439	3	2	37	1	0	0	0	0	1	0	0	0	16043	1696	59	5	2225	5	TLN2	15	62999439	Missense_Mutation	SNP	T	TCGA-A2-A0CZ-01A-11W-A050-09	14943356	62999439	39531953	8	2006										
CDR2	0	genome.wustl.edu	37	chr16	22359093	22359093	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	tcttcatcagggcttggctgAccttgcaaggaagtgatctt							TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	16	22359093	22359093	A	-	DEL	CDR2	ENST00000268383	human	ensembl	69_37n	-1	known	frame_shift_del	c.558	p.Q187fs	0.031	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743	131	0	0	107	74	39.15	-	-	-	-	22359093	A	-	22359093	7	5	37	1	0	1	0	1	0	0	0	0	3201	262	10	0	810	0	CDR2	16	22359093	Frame_Shift_Del	DEL	A	TCGA-A2-A0CZ-01A-11W-A050-09		22359093	67995660	9	2007										
ZBTB7C	0	genome.wustl.edu	37	chr18	45566518	45566519	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	gccttgatgggtcccagaggINScccccccggcaggtcaggga							TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	18	45566518	45566519	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.961_960	p.P320fs	1.000:0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	63	0	0	42	5	10.64	-	-	-	C	45566519	-	C	45566518	7	5	37	1	0	1	1	0	0	0	0	0	17651	1203	42	0	906	0	ZBTB7C	18	45566518	Frame_Shift_Ins	INS	-	TCGA-A2-A0CZ-01A-11W-A050-09		45566518	32510730	10	2008										
S1PR5	0	genome.wustl.edu	37	chr19	10625045	10625046	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	gcgcgtacctggcagtagatINSgcgcgcgtagagtgcacaga							TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	19	10625045	10625046	-	C	INS	S1PR5	ENST00000333430	human	ensembl	69_37n	-1	known	frame_shift_ins	c.643_642	p.I214fs	0.991:0.887	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG8_S1P_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR5	HGNC	ENSG00000180739	9	0	0	8	8	50	-	-	-	C	10625046	-	C	10625045	7	5	37	1	0	1	1	0	0	0	0	0	13883	1464	51	0	557	0	S1PR5	19	10625045	Frame_Shift_Ins	INS	-	TCGA-A2-A0CZ-01A-11W-A050-09		10625045	48503938	11	2009										
RDH13	0	genome.wustl.edu	37	chr19	55556534	55556534	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	cctccgggccacctcctcatCctcagcctcgggggccgggg							TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	19	55556534	55556534	C	-	DEL	RDH13	ENST00000415061	human	ensembl	69_37n	-1	known	frame_shift_del	c.904	p.D302fs	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439	25	0	0	14	7	33.33	-	-	-	-	55556534	C	-	55556534	7	5	37	1	0	1	0	1	0	0	0	0	13275	855	30	0	95	0	RDH13	19	55556534	Frame_Shift_Del	DEL	C	TCGA-A2-A0CZ-01A-11W-A050-09	44931489	55556534	3572449	12	2010										
TMC2	0	genome.wustl.edu	37	chr20	2582823	2582823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccatctgacaagatttcttcGtgtcctggccaactttctca	6	13	3	2			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	20	2582823	2582823	G	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.1289	p.R430H	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	846	0	0	684	96	12.31	-	-	-	A	2582823	G	A	2582823	3	1	37	1	0	0	0	0	1	0	0	0	16080	1145	40	1	1331	1	TMC2	20	2582823	Missense_Mutation	SNP	G	TCGA-A2-A0CZ-01A-11W-A050-09		2582823	60442697	13	2011										
XIAP	0	genome.wustl.edu	37	chrX	123019870	123019870	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtcagtacaaagttgaaaacTatctgggaagcagagatcat	10	6	3	2			TCGA-A2-A0CZ-01A-11W-A050-09	TCGA-A2-A0CZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95d5c606-367a-46b5-b663-dcea3f42e2a2	fae549ea-9db2-46c2-9427-852db8158476	X	123019870	123019870	T	A	SNP	XIAP	ENST00000355640	human	ensembl	69_37n	1	known	missense	c.358	p.Y120N	0.195	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	66	0	0	70	13	15.66	-	-	-	A	123019870	T	A	123019870	3	1	37	1	0	0	0	0	1	0	0	0	17525	1522	53	5	360	5	XIAP	23	123019870	Missense_Mutation	SNP	T	TCGA-A2-A0CZ-01A-11W-A050-09		123019870	32250690	14	2012										
SRRM1	0	genome.wustl.edu	37	chr1	24975442	24975442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ggagaactgtggcccctgctGctaagtgcacaagaaaacat	11	10	0	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	24975442	24975442	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	silent	c.327	p.L109	1.000	pfam_PWI,superfamily_PWI,smart_PWI	pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	628	0	0	137	56	28.87	-	-	-	A	24975442	G	A	24975442	2	1	38	1	0	0	0	0	0	0	0	1	15259	1306	46	4		4	SRRM1	1	24975442	Silent	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		24975442	224275179	1	2013										
KHDRBS1	0	genome.wustl.edu	37	chr1	32502510	32502510	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ccttgtatctttcgttcccaGgatatgatggatgatatctg	9	8	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	32502510	32502510	G	A	SNP	KHDRBS1	ENST00000327300	human	ensembl	69_37n	1	known	splice_site	c.772-1	e5-1	1.000	-	-	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	195	0	0	186	37	16.59	-	-	-	A	32502510	G	A	32502510	5	1	38	1	0	0	0	0	0	0	1	0	8198	1014	35	4	789	4	KHDRBS1	1	32502510	Splice_Site	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	7527068	32502510	216748111	2	2014										
NCDN	0	genome.wustl.edu	37	chr1	36031094	36031095	+	Frame_Shift_Ins	INS	-	-	T													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gctccagctgctaggcagtgINStcagccccaactctgtcaag							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	36031094	36031095	-	T	INS	NCDN	ENST00000356090	human	ensembl	69_37n	1	known	frame_shift_ins	c.2020_2021	p.S675fs	1.000:1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129	9	0	0	6	5	45.45	-	-	-	T	36031095	-	T	36031094	7	5	38	1	0	1	1	0	0	0	0	0	10286	1377	48	0	2046	0	NCDN	1	36031094	Frame_Shift_Ins	INS	-	TCGA-A2-A0D0-01A-11W-A019-09	3528584	36031094	213219527	3	2015										
CASQ2	0	genome.wustl.edu	37	chr1	116280890	116280890	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gccaatgagtttgatgtagtCttcaatgcgttcgaaggctt	11	7	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	116280890	116280890	C	G	SNP	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	missense	c.487	p.D163H	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	293	0	0	476	130	21.38	-	-	-	G	116280890	C	G	116280890	3	3	38	1	0	0	0	0	1	0	0	0	2706	913	32	2	744	2	CASQ2	1	116280890	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	80249796	116280890	132969731	4	2016										
TTF2	0	genome.wustl.edu	37	chr1	117634518	117634518	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tccagcaccgtccacatactGtcccagttgctgagactccg	8	16	0	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	117634518	117634518	G	A	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	silent	c.2751	p.L917	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	122	0	0	114	29	20.14	-	-	-	A	117634518	G	A	117634518	2	1	38	1	0	0	0	0	0	0	0	1	16816	1364	48	4		4	TTF2	1	117634518	Silent	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	1353628	117634518	131616103	5	2017										
TCHH	0	genome.wustl.edu	37	chr1	152082308	152082308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ctcctggcgccttctcttctCccgttcctctctcagcagct	6	19	4	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	152082308	152082308	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3385	p.E1129K	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	408	1	0.24	2093	358	14.59	-	-	-	T	152082308	C	T	152082308	3	4	38	1	0	0	0	0	1	0	0	0	15795	864	30	2	2450	2	TCHH	1	152082308	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	34447790	152082308	97168313	6	2018										
KCNN3	0	genome.wustl.edu	37	chr1	154841540	154841540	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	accccaagagagctcggtctCtatcaccataacaacaattc	5	14	2	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	154841540	154841540	C	G	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.901	p.E301Q	1.000	pfam_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	219	0	0	301	76	20.16	-	-	-	G	154841540	C	G	154841540	3	3	38	1	0	0	0	0	1	0	0	0	8134	922	32	2	1348	2	KCNN3	1	154841540	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	2759232	154841540	94409081	7	2019										
RGL1	0	genome.wustl.edu	37	chr1	183816895	183816895	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ccactaaagaagtgctggaaCtactgctggacaggtaagaa	11	8	0	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	183816895	183816895	C	T	SNP	RGL1	ENST00000304685	human	ensembl	69_37n	1	known	silent	c.439	p.L147	0.990	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344	270	1	0.37	275	97	26.08	-	-	-	T	183816895	C	T	183816895	2	4	38	1	0	0	0	0	0	0	0	1	13359	564	20	4		4	RGL1	1	183816895	Silent	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	28975355	183816895	65433726	8	2020										
TPR	0	genome.wustl.edu	37	chr1	186329484	186329484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tggcggcaagctcttcttcaGacaatatggctcctgtgcca	10	12	3	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	1	186329484	186329484	G	C	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.1112	p.S371C	0.993	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	78	0	0	70	28	28.57	-	-	-	C	186329484	G	C	186329484	3	2	38	1	0	0	0	0	1	0	0	0	16512	942	33	2	6143	2	TPR	1	186329484	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	2512589	186329484	62921137	9	2021										
GREB1	0	genome.wustl.edu	37	chr2	11773164	11773164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tgatgtggaacgtggtggatGtcaactctgctggggagaga	17	5	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	11773164	11773164	G	A	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	missense	c.4966	p.V1656I	0.203	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	91	0	0	200	36	15.25	-	-	-	A	11773164	G	A	11773164	3	1	38	1	0	0	0	0	1	0	0	0	6811	1377	48	4	5180	4	GREB1	2	11773164	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		11773164	231426209	10	2022										
SLC5A6	0	genome.wustl.edu	37	chr2	27428252	27428252	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gcggccgtgctgggaagccaCggcccacacacgccccaagc	13	18	0	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	27428252	27428252	C	G	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	missense	c.700	p.V234L	0.946	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	103	0	0	68	21	23.6	-	-	-	G	27428252	C	G	27428252	3	3	38	1	0	0	0	0	1	0	0	0	14758	536	19	3	1251	3	SLC5A6	2	27428252	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	15655088	27428252	215771121	11	2023										
BIRC6	0	genome.wustl.edu	37	chr2	32738164	32738164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	agcagccattctgtggcataGttatgagctgcttgtagaat	11	7	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	32738164	32738164	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.10511	p.S3504N	1.000	pfam_DUF3643	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	182	0	0	391	88	18.37	-	-	-	A	32738164	G	A	32738164	3	1	38	1	0	0	0	0	1	0	0	0	1443	1029	36	4	10725	4	BIRC6	2	32738164	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	5309912	32738164	210461209	12	2024										
AUP1	0	genome.wustl.edu	37	chr2	74754449	74754449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	catgaaagctacggccccctCaagcagattagtgatagtca	9	11	2	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	74754449	74754449	C	G	SNP	AUP1	ENST00000377526	human	ensembl	69_37n	-1	known	missense	c.1003	p.E335Q	1.000	pfam_CUE,smart_CUE,pfscan_CUE	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307	101	0	0	64	11	14.47	-	-	-	G	74754449	C	G	74754449	3	3	38	1	0	0	0	0	1	0	0	0	1224	835	29	2	241	2	AUP1	2	74754449	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	42016285	74754449	168444924	13	2025										
POLR1A	0	genome.wustl.edu	37	chr2	86327172	86327172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cagttgctgaagtcctgcacGcaggtggagcacacctcttt	11	12	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	86327172	86327172	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	silent	c.201	p.C67	0.985	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	63	0	0	175	109	38.38	-	-	-	A	86327172	G	A	86327172	2	1	38	1	0	0	0	0	0	0	0	1	12283	1079	38	1		1	POLR1A	2	86327172	Silent	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	11572723	86327172	156872201	14	2026										
ASTL	0	genome.wustl.edu	37	chr2	96795705	96795705	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	atggtgggcagcccacgccgGctgaaggcgagcctggaacc	16	13	0	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	96795705	96795705	G	C	SNP	ASTL	ENST00000342380	human	ensembl	69_37n	-1	known	missense	c.732	p.S244R	0.976	pfam_Peptidase_M12A,prints_Peptidase_M12A	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886	46	0	0	127	22	14.77	-	-	-	C	96795705	G	C	96795705	3	2	38	1	0	0	0	0	1	0	0	0	1067	1194	42	4	570	4	ASTL	2	96795705	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	10468533	96795705	146403668	15	2027										
CCDC141	0	genome.wustl.edu	37	chr2	179702066	179702066	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tagtgggggctcagctttgaActggaggtaaggcctctcaa	14	8	2	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	179702066	179702066	A	C	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	missense	c.3880	p.F1294V	0.001	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	152	1	0.65	295	43	12.68	-	-	-	C	179702066	A	C	179702066	3	2	38	1	0	0	0	0	1	0	0	0	2800	43	2	5	476	5	CCDC141	2	179702066	Missense_Mutation	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09	82906361	179702066	63497307	16	2028										
PAX3	0	genome.wustl.edu	37	chr2	223065949	223065949	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gtcgaacgtgttcaaaaggaTttgaaaccaactattggagg	11	6	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	2	223065949	223065949	T	C	SNP	PAX3	ENST00000392069	human	ensembl	69_37n	-1	known	missense	c.1462	p.I488V	0.908	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903	117	1	0.85	141	60	29.85	-	-	-	C	223065949	T	C	223065949	3	2	38	1	0	0	0	0	1	0	0	0	11553	1493	52	5	59	5	PAX3	2	223065949	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	43363883	223065949	20133424	17	2029										
CSPG5	0	genome.wustl.edu	37	chr3	47618393	47618393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	acagtaacttgggaagaggtCgcacactgaccggcaggagc	14	10	0	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	3	47618393	47618393	C	T	SNP	CSPG5	ENST00000383738	human	ensembl	69_37n	-1	known	missense	c.1123	p.D375N	1.000	NULL	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646	130	0	0	8	6	42.86	-	-	-	T	47618393	C	T	47618393	3	4	38	1	0	0	0	0	1	0	0	0	3993	884	31	1	512	1	CSPG5	3	47618393	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		47618393	150404037	18	2030										
GPR128	0	genome.wustl.edu	37	chr3	100354667	100354667	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	acttccagaaatgcttcaccTgaggtaaaactcacagagct	7	11	2	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	3	100354667	100354667	T	G	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	silent	c.594	p.P198	0.008	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	114	0	0	125	75	37.5	-	-	-	G	100354667	T	G	100354667	2	3	38	1	0	0	0	0	0	0	0	1	6691	1567	55	5		5	GPR128	3	100354667	Silent	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	52736274	100354667	97667763	19	2031										
PARP9	0	genome.wustl.edu	37	chr3	122274300	122274300	+	Frame_Shift_Del	DEL	T	T	-													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ctcattgctcaccaggtgaaTttctttcaaattactcatca							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	3	122274300	122274300	T	-	DEL	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	frame_shift_del	c.823	p.I275fs	1.000	pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	392	0	0	347	148	29.6	-	-	-	-	122274300	T	-	122274300	7	5	38	1	0	1	0	1	0	0	0	0	11539	1493	52	0	1826	0	PARP9	3	122274300	Frame_Shift_Del	DEL	T	TCGA-A2-A0D0-01A-11W-A019-09	21919633	122274300	75748130	20	2032										
FBXW7	0	genome.wustl.edu	37	chr4	153247366	153247366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aaaccctaagagtggcatctCgagaaccgctaacaactctg	8	12	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	4	153247366	153247366	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	139	0	0	47	110	70.06	-	-	-	T	153247366	C	T	153247366	3	4	38	1	0	0	0	0	1	0	0	0	5815	884	31	1	699	1	FBXW7	4	153247366	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		153247366	37906910	21	2033										
FAT1	0	genome.wustl.edu	37	chr4	187627851	187627851	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aaccaacaggtgcatcttctTtcactgtccccttttccaca	4	15	3	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	4	187627851	187627851	T	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.3131	p.K1044R	0.954	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	195	0	0	49	46	48.42	-	-	-	C	187627851	T	C	187627851	3	2	38	1	0	0	0	0	1	0	0	0	5735	1841	64	5	10739	5	FAT1	4	187627851	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	34380485	187627851	3526425	22	2034										
PLEKHG4B	0	genome.wustl.edu	37	chr5	182269	182269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gctgggcctgcttgtgtcctCcagcccagcccacccgggcc	12	19	0	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	5	182269	182269	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	missense	c.3647	p.S1216F	0.672	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	22	0	0	34	11	24.44	-	-	-	T	182269	C	T	182269	3	4	38	1	0	0	0	0	1	0	0	0	12146	855	30	2	3717	2	PLEKHG4B	5	182269	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		182269	180732991	23	2035										
ARSK	0	genome.wustl.edu	37	chr5	94939216	94939216	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ggcttaaaacccatatgaatCcaagagcagtttgaacaaaa	7	8	0	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	5	94939216	94939216	C	G	SNP	ARSK	ENST00000380009	human	ensembl	69_37n	1	known	missense	c.1597	p.P533A	0.000	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	104	0	0	26	19	42.22	-	-	-	G	94939216	C	G	94939216	3	3	38	1	0	0	0	0	1	0	0	0	1000	855	30	2	1627	2	ARSK	5	94939216	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	94756947	94939216	85976044	24	2036										
STC2	0	genome.wustl.edu	37	chr5	172745089	172745090	+	Frame_Shift_Ins	INS	-	-	G													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tccacctggggctggcgctcINSggggggcgccgtgggaggct							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	5	172745089	172745090	-	G	INS	STC2	ENST00000265087	human	ensembl	69_37n	-1	known	frame_shift_ins	c.670_669	p.E223fs	0.320:0.000	NULL	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739	26	0	0	14	2	12.5	-	-	-	G	172745090	-	G	172745089	7	5	38	1	0	1	1	0	0	0	0	0	15367	893	31	0	242	0	STC2	5	172745089	Frame_Shift_Ins	INS	-	TCGA-A2-A0D0-01A-11W-A019-09	77805873	172745089	8170171	25	2037										
COL19A1	0	genome.wustl.edu	37	chr6	70866053	70866053	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ctgccaagccagtgtcccagGgctgaaaagcaacaaaggag	12	11	0	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	6	70866053	70866053	G	T	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.2114	p.G705V	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	84	0	0	193	23	10.6	-	-	-	T	70866053	G	T	70866053	3	4	38	1	0	0	0	0	1	0	0	0	3706	1232	43	4	2236	4	COL19A1	6	70866053	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		70866053	100249014	26	2038										
RMND1	0	genome.wustl.edu	37	chr6	151748625	151748625	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aaagttgcttactctattttTatgtagttaagttcttcatt	5	5	3	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	6	151748625	151748625	T	A	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	silent	c.822	p.I274	0.027	pfam_DUF155	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	57	0	0	568	108	15.93	-	-	-	A	151748625	T	A	151748625	2	1	38	1	0	0	0	0	0	0	0	1	13482	1744	61	5		5	RMND1	6	151748625	Silent	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	80882572	151748625	19366442	27	2039										
CNKSR3	0	genome.wustl.edu	37	chr6	154754627	154754627	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aaaactttatcctccatttcCgctacaaagcaatcctaaag	3	12	0	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	6	154754627	154754627	C	T	SNP	CNKSR3	ENST00000367213	human	ensembl	69_37n	-1	known	silent	c.522	p.A174	0.683	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	-	no_errors	CNKSR3	HGNC	ENSG00000153721	33	0	0	182	66	26.61	-	-	-	T	154754627	C	T	154754627	2	4	38	1	0	0	0	0	0	0	0	1	3638	639	23	1		1	CNKSR3	6	154754627	Silent	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	3006002	154754627	16360440	28	2040										
KIAA1147	0	genome.wustl.edu	37	chr7	141362534	141362534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aggtccaggagaaagctccgGtctccttgggggtctaggcc	15	11	2	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	7	141362534	141362534	G	C	SNP	KIAA1147	ENST00000536163	human	ensembl	69_37n	-1	known	missense	c.1290	p.D430E	1.000	NULL	pfam_DUF2347	-	no_errors	KIAA1147	HGNC	ENSG00000257093	29	0	0	65	35	35	-	-	-	C	141362534	G	C	141362534	3	2	38	1	0	0	0	0	1	0	0	0	8262	1252	44	4	81	4	KIAA1147	7	141362534	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		141362534	17776129	29	2041										
DLC1	0	genome.wustl.edu	37	chr8	12956886	12956886	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tggttagggaagccccaaccCcagaatcccttctttccggg	10	14	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	8	12956886	12956886	C	G	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.2960	p.G987A	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	104	0	0	108	40	27.03	-	-	-	G	12956886	C	G	12956886	3	3	38	1	0	0	0	0	1	0	0	0	4586	623	22	4	1666	4	DLC1	8	12956886	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		12956886	133407136	30	2042										
SGK3	0	genome.wustl.edu	37	chr8	67748219	67748219	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cgtaatgtgctcttgaaaaaTgtgaaacatccgtttttggt	9	6	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	8	67748219	67748219	T	C	SNP	SGK3	ENST00000262211	human	ensembl	69_37n	1	known	silent	c.651	p.N217	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK3	HGNC	ENSG00000104205	145	0	0	247	62	20	-	-	-	C	67748219	T	C	67748219	2	2	38	1	0	0	0	0	0	0	0	1	14300	1461	51	5		5	SGK3	8	67748219	Silent	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	54791333	67748219	78615803	31	2043										
ARFGEF1	0	genome.wustl.edu	37	chr8	68208734	68208734	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	agtagctttggctgttgtctGattgatgagatttttgcttg	12	4	1	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	8	68208734	68208734	G	A	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	nonsense	c.571	p.Q191*	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	208	0	0	674	326	32.47	-	-	-	A	68208734	G	A	68208734	4	1	38	1	0	0	0	0	0	1	0	0	854	1299	45	2	5118	2	ARFGEF1	8	68208734	Nonsense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	460515	68208734	78155288	32	2044										
FAM49B	0	genome.wustl.edu	37	chr8	130867866	130867866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gataattctaccttgagttcAtcaaaccggagtgtgaaatg	9	7	3	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	8	130867866	130867866	A	C	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.429	p.D143E	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	154	0	0	153	78	33.77	-	-	-	C	130867866	A	C	130867866	3	2	38	1	0	0	0	0	1	0	0	0	5622	214	8	5	573	5	FAM49B	8	130867866	Missense_Mutation	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09	62659132	130867866	15496156	33	2045										
CA9	0	genome.wustl.edu	37	chr9	35675543	35675543	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tcatttatacaggggatgacCagagtcattggcgctatgga	12	7	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	9	35675543	35675543	C	G	SNP	CA9	ENST00000378357	human	ensembl	69_37n	1	known	missense	c.412	p.Q138E	0.996	superfamily_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	101	0	0	51	72	58.06	-	-	-	G	35675543	C	G	35675543	3	3	38	1	0	0	0	0	1	0	0	0	2549	595	21	4	418	4	CA9	9	35675543	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		35675543	105537888	34	2046										
SLC27A4	0	genome.wustl.edu	37	chr9	131115713	131115713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ggtgggggcctgtggtttcaAtagccgcatcctgtccttcg	14	11	1	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	9	131115713	131115713	A	G	SNP	SLC27A4	ENST00000300456	human	ensembl	69_37n	1	known	missense	c.1217	p.N406S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	38	0	0	11	15	57.69	-	-	-	G	131115713	A	G	131115713	3	3	38	1	0	0	0	0	1	0	0	0	14617	101	4	5	1247	5	SLC27A4	9	131115713	Missense_Mutation	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09	95440170	131115713	10097718	35	2047										
ZNF33B	0	genome.wustl.edu	37	chr10	43088872	43088872	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gatgcctggtgagtactgacTtgtggtagaaagttttccca	12	7	0	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	10	43088872	43088872	T	C	SNP	ZNF33B	ENST00000359467	human	ensembl	69_37n	-1	known	missense	c.1526	p.K509R	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693	287	0	0	333	115	25.67	-	-	-	C	43088872	T	C	43088872	3	2	38	1	0	0	0	0	1	0	0	0	17951	1609	56	5	814	5	ZNF33B	10	43088872	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09		43088872	92445875	36	2048										
C10orf12	0	genome.wustl.edu	37	chr10	98743239	98743239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	agaaagatgatgagagtgatGccccatgcagctctcttggg	13	8	1	5			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	10	98743239	98743239	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.2092	p.A698T	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	109	0	0	35	26	42.62	-	-	-	A	98743239	G	A	98743239	3	1	38	1	0	0	0	0	1	0	0	0	1599	1319	46	4	2094	4	C10orf12	10	98743239	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	55654367	98743239	36791508	37	2049										
PDE3B	0	genome.wustl.edu	37	chr11	14853233	14853233	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	attttagtagaagagtatgaCtcattaatagaaaagatgag	9	2	1	6			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	11	14853233	14853233	C	G	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	missense	c.2004	p.D668E	0.063	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	169	0	0	66	21	24.14	-	-	-	G	14853233	C	G	14853233	3	3	38	1	0	0	0	0	1	0	0	0	11711	564	20	4	2038	4	PDE3B	11	14853233	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		14853233	120153283	38	2050										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57081323	57081323	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tggcagggcctccattctctGaggagggggctggacttgag	17	9	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	11	57081323	57081323	G	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	nonsense	c.839	p.S280*	0.099	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	10	0	0	12	14	53.85	-	-	-	C	57081323	G	C	57081323	4	2	38	1	0	0	0	0	0	1	0	0	16415	1294	45	2	4378	2	TNKS1BP1	11	57081323	Nonsense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	42228090	57081323	77925193	39	2051										
VAMP1	0	genome.wustl.edu	37	chr12	6574108	6574108	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gctcccagcatgatcatcatCtgaggaaacatggacaaaaa	8	10	3	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	6574108	6574108	C	G	SNP	VAMP1	ENST00000361716	human	ensembl	69_37n	-1	known	splice_site	c.289-1	e4-1	1.000	-	-	-	no_errors	VAMP1	HGNC	ENSG00000139190	235	0	0	194	72	27.07	-	-	-	G	6574108	C	G	6574108	5	3	38	1	0	0	0	0	0	0	1	0	17209	927	32	2	105	2	VAMP1	12	6574108	Splice_Site	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		6574108	127277787	40	2052										
SLCO1C1	0	genome.wustl.edu	37	chr12	20885886	20885886	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gcccttggaatattctctggGgggatagttatgaaaaaatt	11	5	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	20885886	20885886	G	C	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	silent	c.1230	p.G410	0.998	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	199	0	0	236	70	22.73	-	-	-	C	20885886	G	C	20885886	2	2	38	1	0	0	0	0	0	0	0	1	14814	1219	43	4		4	SLCO1C1	12	20885886	Silent	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	14311778	20885886	112966009	41	2053										
STK38L	0	genome.wustl.edu	37	chr12	27450761	27450761	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	aatttttatagcaacctaatTttacagcatgaagagagaga	7	5	0	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	27450761	27450761	T	G	SNP	STK38L	ENST00000389032	human	ensembl	69_37n	1	known	missense	c.108	p.I36M	0.938	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38L	HGNC	ENSG00000211455	176	0	0	117	35	22.88	-	-	-	G	27450761	T	G	27450761	3	3	38	1	0	0	0	0	1	0	0	0	15395	1829	64	5	110	5	STK38L	12	27450761	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	6564875	27450761	106401134	42	2054										
OR6C2	0	genome.wustl.edu	37	chr12	55846550	55846550	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	atgcaggtcctctcctaaagAtctcatgctcagatacatgg	8	11	3	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	55846550	55846550	A	G	SNP	OR6C2	ENST00000322678	human	ensembl	69_37n	1	known	missense	c.553	p.I185V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	297	0	0	460	126	21.47	-	-	-	G	55846550	A	G	55846550	3	3	38	1	0	0	0	0	1	0	0	0	11264	333	12	5	555	5	OR6C2	12	55846550	Missense_Mutation	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09	28395789	55846550	78005345	43	2055										
ATXN2	0	genome.wustl.edu	37	chr12	111926531	111926531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tctcttgatttttctccctcTctatttttgtttagtagttg	5	8	3	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	111926531	111926531	T	C	SNP	ATXN2	ENST00000483311	human	ensembl	69_37n	-1	known	missense	c.2231	p.E744G	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN2	HGNC	ENSG00000204842	47	0	0	166	30	15.31	-	-	-	C	111926531	T	C	111926531	3	2	38	1	0	0	0	0	1	0	0	0	1215	1548	54	5	1516	5	ATXN2	12	111926531	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	56079981	111926531	21925364	44	2056										
DDX55	0	genome.wustl.edu	37	chr12	124104236	124104237	+	Frame_Shift_Del	DEL	AA	AA	-													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	agaaggccaaaaaagaaaagAagaaaaaaatgaatgagaaa							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	12	124104236	124104237	AA	-	DEL	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	frame_shift_del	c.1591_1592	p.K531fs	1.000:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	168	0	0	11	6	33.33	-	-	-	-	124104237	AA	-	124104236	7	5	38	1	0	1	0	1	0	0	0	0	4404	247	9	0	1641	0	DDX55	12	124104236	Frame_Shift_Del	DEL	AA	TCGA-A2-A0D0-01A-11W-A019-09	12177705	124104236	9747659	45	2057										
MRPL52	0	genome.wustl.edu	37	chr14	23302667	23302667	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	atgaaaggccagcttcgaagAaaagctgaaagggagacgtt	13	6	0	4			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	14	23302667	23302667	A	G	SNP	MRPL52	ENST00000355151	human	ensembl	69_37n	1	known	silent	c.198	p.R66	0.995	NULL	NULL	-	no_errors	MRPL52	HGNC	ENSG00000172590	154	0	0	118	57	32.57	-	-	-	G	23302667	A	G	23302667	2	3	38	1	0	0	0	0	0	0	0	1	9888	243	9	5		5	MRPL52	14	23302667	Silent	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09		23302667	84046873	46	2058										
RBM23	0	genome.wustl.edu	37	chr14	23374450	23374450	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	tctgagatgatacgtacatcGcgaacctatccaggacgcaa	9	11	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	14	23374450	23374450	G	A	SNP	RBM23	ENST00000359890	human	ensembl	69_37n	-1	known	silent	c.579	p.R193	0.983	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM23	HGNC	ENSG00000100461	160	1	0.62	39	71	64.55	-	-	-	A	23374450	G	A	23374450	2	1	38	1	0	0	0	0	0	0	0	1	13206	1074	38	1		1	RBM23	14	23374450	Silent	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	71783	23374450	83975090	47	2059										
TYRO3	0	genome.wustl.edu	37	chr15	41859670	41859670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	caactacagcctcagggtgcGctgtgccaatgccttggggc	13	13	1	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	15	41859670	41859670	G	A	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	1	known	missense	c.896	p.R299H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	69	0	0	40	17	29.31	-	-	-	A	41859670	G	A	41859670	3	1	38	1	0	0	0	0	1	0	0	0	16911	1087	38	1	922	1	TYRO3	15	41859670	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		41859670	60671722	48	2060										
ABCA3	0	genome.wustl.edu	37	chr16	2336930	2336930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ctcattaaagccgcccccctCcacagaagccctgaagatca	6	17	2	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	16	2336930	2336930	C	G	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.3043	p.E1015Q	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	22	0	0	41	22	34.92	-	-	-	G	2336930	C	G	2336930	3	3	38	1	0	0	0	0	1	0	0	0	33	864	30	2	2119	2	ABCA3	16	2336930	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		2336930	88017823	49	2061										
C16orf62	0	genome.wustl.edu	37	chr16	19711758	19711758	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	accagacatgactcatctgaCggagctggccctcagactcc	9	15	3	4			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	16	19711758	19711758	C	G	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	missense	c.3119	p.T1040R	0.213	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	151	0	0	72	21	22.58	-	-	-	G	19711758	C	G	19711758	3	3	38	1	0	0	0	0	1	0	0	0	1838	536	19	3	2974	3	C16orf62	16	19711758	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	17374828	19711758	70642995	50	2062										
SLC12A4	0	genome.wustl.edu	37	chr16	67995581	67995581	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cgagctttcccagaagagacGatacctttgggcggatgtcc	12	11	0	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	16	67995581	67995581	G	C	SNP	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	missense	c.245	p.S82W	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	37	0	0	69	23	25	-	-	-	C	67995581	G	C	67995581	3	2	38	1	0	0	0	0	1	0	0	0	14474	1059	37	3	3106	3	SLC12A4	16	67995581	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	48283823	67995581	22359172	51	2063										
CAMTA2	0	genome.wustl.edu	37	chr17	4872988	4872988	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	acctcctgctgctccttcagCcgccggccctgaagggagag	12	16	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	17	4872988	4872988	C	T	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	silent	c.3267	p.R1089	0.974	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	313	0	0	414	229	35.61	-	-	-	T	4872988	C	T	4872988	2	4	38	1	0	0	0	0	0	0	0	1	2639	726	26	4		4	CAMTA2	17	4872988	Silent	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09		4872988	76322222	52	2064										
SLC2A4	0	genome.wustl.edu	37	chr17	7187850	7187850	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gatgtttctggagtgctggcTgagctgaaggatgagaagcg	17	5	1	3			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	17	7187850	7187850	T	C	SNP	SLC2A4	ENST00000570783	human	ensembl	69_37n	1	known	nonstop	c.658	p.*220R	0.732	NULL	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Glc_transpt_4,pfscan_MFS_dom	-	no_errors	SLC2A4	HGNC	ENSG00000181856	92	0	0	30	15	33.33	-	-	-	C	7187850	T	C	7187850	4	2	38	1	0	0	0	0	0	0	0	0	14635	1567	55	5	800	5	SLC2A4	17	7187850	Nonstop_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	2314862	7187850	74007360	53	2065										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	160	0	0	121	216	64.09	-	-	-	A	7578263	G	A	7578263	4	1	38	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	390413	7578263	73616947	54	2066										
MRPS7	0	genome.wustl.edu	37	chr17	73261941	73261941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cagggccccgtgatcaagagGaagcatgacttgcacaagat	12	10	1	4			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	17	73261941	73261941	G	A	SNP	MRPS7	ENST00000581993	human	ensembl	69_37n	1	putative	missense	c.454	p.E152K	0.899	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPS7	HGNC	ENSG00000125445	50	0	0	28	9	24.32	-	-	-	A	73261941	G	A	73261941	3	1	38	1	0	0	0	0	1	0	0	0	9920	1165	41	2	684	2	MRPS7	17	73261941	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	65683678	73261941	7933269	55	2067										
VAV1	0	genome.wustl.edu	37	chr19	6828862	6828862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	actatggccggcccaagatcGacggggaactcaagatcacc	11	13	2	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	6828862	6828862	G	A	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	missense	c.1216	p.D406N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	102	1	0.97	22	43	66.15	-	-	-	A	6828862	G	A	6828862	3	1	38	1	0	0	0	0	1	0	0	0	17228	1058	37	1	1266	1	VAV1	19	6828862	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		6828862	52300121	56	2068										
ZNF844	0	genome.wustl.edu	37	chr19	12186728	12186728	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gtgggaaagcattcggtagtCccaattccctttatgaacat	9	9	0	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	12186728	12186728	C	A	SNP	ZNF844	ENST00000439326	human	ensembl	69_37n	1	known	missense	c.793	p.P265T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547	107	0	0	92	23	20	-	-	-	A	12186728	C	A	12186728	3	1	38	1	0	0	0	0	1	0	0	0	18283	855	30	2	807	2	ZNF844	19	12186728	Missense_Mutation	SNP	C	TCGA-A2-A0D0-01A-11W-A019-09	5357866	12186728	46942255	57	2069										
ATP4A	0	genome.wustl.edu	37	chr19	36046578	36046578	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ggaggtctgggggggcttacTtgcgattaacctggtctacg	16	8	2	0			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	36046578	36046578	T	G	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.2006	p.K669T	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	167	0	0	61	17	21.52	-	-	-	G	36046578	T	G	36046578	3	3	38	1	0	0	0	0	1	0	0	0	1149	1623	56	5	1141	5	ATP4A	19	36046578	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09	23859850	36046578	23082405	58	2070										
ZNF526	0	genome.wustl.edu	37	chr19	42730230	42730231	+	Frame_Shift_Ins	INS	-	-	C													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gccagtcgcctttgcccgcgINSccccccgcctccccatcact							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	42730230	42730231	-	C	INS	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	frame_shift_ins	c.1675_1676	p.R561fs	0.046:0.048	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	32	0	0	20	3	13.04	-	-	-	C	42730231	-	C	42730230	7	5	38	1	0	1	1	0	0	0	0	0	18063	1087	38	0	1677	0	ZNF526	19	42730230	Frame_Shift_Ins	INS	-	TCGA-A2-A0D0-01A-11W-A019-09	6683652	42730230	16398753	59	2071										
ZNF761	0	genome.wustl.edu	37	chr19	53959767	53959767	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	caagtgtaatgagtgtggcaAgacctttagtcggaagtcat	12	6	1	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	53959767	53959767	A	T	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.859	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	337	0	0	73	31	29.81	-	-	-	T	53959767	A	T	53959767	1	4	38	0	1	0	0	0	0	0	0	0	18230	72	3	5		5	ZNF761	19	53959767	RNA	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09	11229537	53959767	5169216	60	2072										
LILRB5	0	genome.wustl.edu	37	chr19	54754872	54754873	+	Frame_Shift_Ins	INS	-	-	A													0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gcctggagaggaaaggactcINStctcagtgtccatctgtctg							TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	19	54754872	54754873	-	A	INS	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1763_1762	p.R588fs	0.000:0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	55	0	0	48	6	11.11	-	-	-	A	54754873	-	A	54754872	7	5	38	1	0	1	1	0	0	0	0	0	8849	928	32	0		0	LILRB5	19	54754872	Frame_Shift_Ins	INS	-	TCGA-A2-A0D0-01A-11W-A019-09	795105	54754872	4374111	61	2073										
ASXL1	0	genome.wustl.edu	37	chr20	31022690	31022690	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	gaggacctgccttctctgagAaaggaggaaagctgcctact	12	10	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	20	31022690	31022690	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.2175	p.R725	0.004	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	50	0	0	64	16	20	-	-	-	G	31022690	A	G	31022690	2	3	38	1	0	0	0	0	0	0	0	1	1070	243	9	5		5	ASXL1	20	31022690	Silent	SNP	A	TCGA-A2-A0D0-01A-11W-A019-09		31022690	32002830	62	2074										
MYH7B	0	genome.wustl.edu	37	chr20	33575611	33575611	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	ggccaaggccacctatgaccGgctgttcaggtggctggtgt	15	11	1	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	20	33575611	33575611	G	C	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.1436	p.R479P	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	32	0	0	56	11	16.42	-	-	-	C	33575611	G	C	33575611	3	2	38	1	0	0	0	0	1	0	0	0	10112	1116	39	3	1498	3	MYH7B	20	33575611	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09	2552921	33575611	29449909	63	2075										
KCNJ15	0	genome.wustl.edu	37	chr21	39671648	39671648	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cagttggtcatcacgaccttGattgagatcttcatcaccgg	9	11	5	2			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	21	39671648	39671648	G	T	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.465	p.L155F	0.988	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	149	0	0	38	69	64.49	-	-	-	T	39671648	G	T	39671648	3	4	38	1	0	0	0	0	1	0	0	0	8103	1281	45	2	467	2	KCNJ15	21	39671648	Missense_Mutation	SNP	G	TCGA-A2-A0D0-01A-11W-A019-09		39671648	8458247	64	2076										
SMCR7L	0	genome.wustl.edu	37	chr22	39910045	39910045	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107692307692308	7	0.685062192968145	1.21678520625889	2.2018018018018	0.33027027027027	0.0405594405594406	0.314818514818515	0	cctcaagatcctcaaggccaTatgcaagtccaccccggctc	7	17	2	1			TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5	bbf1c43d-d7b3-4574-a074-d22ad537829c	22	39910045	39910045	T	C	SNP	SMCR7L	ENST00000325301	human	ensembl	69_37n	1	known	missense	c.1109	p.I370T	1.000	NULL	NULL	-	no_errors	SMCR7L	HGNC	ENSG00000100335	68	0	0	34	9	20.93	-	-	-	C	39910045	T	C	39910045	3	2	38	1	0	0	0	0	1	0	0	0	14880	1406	49	5	1123	5	SMCR7L	22	39910045	Missense_Mutation	SNP	T	TCGA-A2-A0D0-01A-11W-A019-09		39910045	11394521	65	2077										
TIE1	0	genome.wustl.edu	37	chr1	43783620	43783620	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gattttctgcggaaaagccgGgtcctagagactgacccagc	12	11	1	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	43783620	43783620	G	A	SNP	TIE1	ENST00000372476	human	ensembl	69_37n	1	known	silent	c.2799	p.R933	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	80	0	0	54	16	22.86	-	-	-	A	43783620	G	A	43783620	2	1	39	1	0	0	0	0	0	0	0	1	15988	1219	43	4		4	TIE1	1	43783620	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		43783620	205467001	1	2078										
SPAG17	0	genome.wustl.edu	37	chr1	118624074	118624074	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctcttgagtattcattttcaTgacatattgctgccttatct	5	9	4	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	118624074	118624074	T	G	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.1954	p.M652L	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	240	0	0	224	32	12.5	-	-	-	G	118624074	T	G	118624074	3	3	39	1	0	0	0	0	1	0	0	0	15070	1464	51	5	4857	5	SPAG17	1	118624074	Missense_Mutation	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09	74840454	118624074	130626547	2	2079										
FMO5	0	genome.wustl.edu	37	chr1	146680607	146680607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agcccctctcctggtgctgaGgaaaacctggggcatggaag	14	11	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	146680607	146680607	G	T	SNP	FMO5	ENST00000254090	human	ensembl	69_37n	-1	known	missense	c.637	p.L213I	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781	97	0	0	56	57	50.44	-	-	-	T	146680607	G	T	146680607	3	4	39	1	0	0	0	0	1	0	0	0	6004	1000	35	4	1123	4	FMO5	1	146680607	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	28056533	146680607	102570014	3	2080										
TMEM18	0	genome.wustl.edu	37	chr2	676235	676236	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gactccccgggaccctgctgINStacctggggacagtgtctgg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	676235	676236	-	C	INS	TMEM18	ENST00000432667	human	ensembl	69_37n	-1	known	frame_shift_ins	c.61_60	p.Q20fs	0.008:0.023	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	35	0	0	4	3	42.86	-	-	-	C	676236	-	C	676235	7	5	39	1	0	1	1	0	0	0	0	0	16193	1392	48	0		0	TMEM18	2	676235	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09		676235	242523138	4	2081										
MYT1L	0	genome.wustl.edu	37	chr2	1843052	1843052	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	aggtacccgtctttctgcctCttggccgccaaggggcaccc	11	16	3	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	1843052	1843052	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.2949	p.K983N	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	33	0	0	53	11	17.19	-	-	-	G	1843052	C	G	1843052	3	3	39	1	0	0	0	0	1	0	0	0	10179	912	32	2	631	2	MYT1L	2	1843052	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	1166817	1843052	241356321	5	2082										
TMEM214	0	genome.wustl.edu	37	chr2	27258528	27258528	+	Frame_Shift_Del	DEL	C	C	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agggctgctggcgaaggcagCagggtctctggagctctttt							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	27258528	27258528	C	-	DEL	TMEM214	ENST00000238788	human	ensembl	69_37n	1	known	frame_shift_del	c.569	p.A190fs	0.007	NULL	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	288	0	0	134	92	39.83	-	-	-	-	27258528	C	-	27258528	7	5	39	1	0	1	0	1	0	0	0	0	16232	710	25	0	583	0	TMEM214	2	27258528	Frame_Shift_Del	DEL	C	TCGA-A2-A0D1-01A-11W-A050-09	25415476	27258528	215940845	6	2083	20	2								
TMEM214	0	genome.wustl.edu	37	chr2	27258530	27258531	+	In_Frame_Ins	INS	-	-	TGT													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gctgctggcgaaggcagcagINSggtctctggagctctttttt							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	27258530	27258531	-	TGT	INS	TMEM214	ENST00000238788	human	ensembl	69_37n	1	known	in_frame_ins	c.571_572	p.G191in_frame_insVW	0.367:0.403	NULL	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	288	0	0	134	92	40.71	-	-	-	TGT	27258531	-	TGT	27258530	7	5	39	1	0	1	1	0	0	0	0	0	16232	1000	35	0	585	0	TMEM214	2	27258530	In_Frame_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	2	27258530	215940843	7	2084	20	2								
NAT8	0	genome.wustl.edu	37	chr2	73868674	73868674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ccggaaggtggctggggcatGctcggccatcccccgggaga	17	13	0	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	73868674	73868674	G	T	SNP	NAT8	ENST00000272425	human	ensembl	69_37n	-1	known	missense	c.82	p.H28N	0.987	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035	94	0	0	63	14	18.18	-	-	-	T	73868674	G	T	73868674	3	4	39	1	0	0	0	0	1	0	0	0	10251	1319	46	4	605	4	NAT8	2	73868674	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	46610144	73868674	169330699	8	2085										
HDLBP	0	genome.wustl.edu	37	chr2	242202140	242202140	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	acccacctgagtctgcagtcTagcaacaatgtccttccgag	8	14	2	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	242202140	242202140	T	C	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.436	p.R146G	0.030	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	281	0	0	129	77	37.38	-	-	-	C	242202140	T	C	242202140	3	2	39	1	0	0	0	0	1	0	0	0	7076	1530	53	5	3466	5	HDLBP	2	242202140	Missense_Mutation	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09	168333466	242202140	997233	9	2086										
PLCL2	0	genome.wustl.edu	37	chr3	17053177	17053177	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tgccaaaggtgatgtggtagAtccttatgtctatgttgaaa	11	5	1	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	17053177	17053177	A	T	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.1961	p.D654V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	171	0	0	99	102	50.75	-	-	-	T	17053177	A	T	17053177	3	4	39	1	0	0	0	0	1	0	0	0	12114	333	12	5	2339	5	PLCL2	3	17053177	Missense_Mutation	SNP	A	TCGA-A2-A0D1-01A-11W-A050-09		17053177	180969253	10	2087										
XCR1	0	genome.wustl.edu	37	chr3	46063416	46063416	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tagtaaaaaaaggtggtgctCtctgggttgcctgaggactc	13	7	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	46063416	46063416	C	G	SNP	XCR1	ENST00000309285	human	ensembl	69_37n	-1	known	missense	c.24	p.E8D	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	191	0	0	10	40	78.43	-	-	-	G	46063416	C	G	46063416	3	3	39	1	0	0	0	0	1	0	0	0	17522	912	32	2	981	2	XCR1	3	46063416	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	29010239	46063416	151959014	11	2088										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	106	0	0	144	72	33.33	-	-	-	A	178936082	G	A	178936082	3	1	39	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	132872666	178936082	19086348	12	2089										
TXK	0	genome.wustl.edu	37	chr4	48076033	48076033	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ccacttgattgggaacttggCtccaaaagaactgacatact	8	10	0	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	48076033	48076033	C	T	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	missense	c.1276	p.A426T	0.898	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	118	0	0	153	28	15.47	-	-	-	T	48076033	C	T	48076033	3	4	39	1	0	0	0	0	1	0	0	0	16883	797	28	4	319	4	TXK	4	48076033	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09		48076033	143078243	13	2090										
DDIT4L	0	genome.wustl.edu	37	chr4	101108852	101108852	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ttttaggacccttcaatcacTgttgttccaatcagtgagta	7	9	3	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	101108852	101108852	T	C	SNP	DDIT4L	ENST00000273990	human	ensembl	69_37n	-1	known	silent	c.564	p.T188	0.999	NULL	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358	36	0	0	23	20	46.51	-	-	-	C	101108852	T	C	101108852	2	2	39	1	0	0	0	0	0	0	0	1	4363	1567	55	5		5	DDIT4L	4	101108852	Silent	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09	53032819	101108852	90045424	14	2091										
USP53	0	genome.wustl.edu	37	chr4	120181041	120181041	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gaaatgtttgcagaattgctAcaagcagcaaatacaacaga	8	7	0	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	120181041	120181041	A	G	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	silent	c.636	p.L212	0.897	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	178	0	0	159	119	42.81	-	-	-	G	120181041	A	G	120181041	2	3	39	1	0	0	0	0	0	0	0	1	17181	378	14	5		5	USP53	4	120181041	Silent	SNP	A	TCGA-A2-A0D1-01A-11W-A050-09	19072189	120181041	70973235	15	2092										
MAML3	0	genome.wustl.edu	37	chr4	140811603	140811603	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ttctcttcaaagtcttcgttGaacaggtcctgtatgtcatc	7	10	4	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	140811603	140811603	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.987	p.F329	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	388	0	0	259	40	13.38	-	-	-	A	140811603	G	A	140811603	2	1	39	1	0	0	0	0	0	0	0	1	9278	1281	45	2		2	MAML3	4	140811603	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	20630562	140811603	50342673	16	2093										
ARHGAP10	0	genome.wustl.edu	37	chr4	148985600	148985600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	aaggctcgagccgtgtatccGtgtgaagcagaacacagctc	12	11	0	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	148985600	148985600	G	A	SNP	ARHGAP10	ENST00000507661	human	ensembl	69_37n	1	putative	missense	c.1093	p.V365M	0.022	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP10	HGNC	ENSG00000071205	284	0	0	280	46	14.11	-	-	-	A	148985600	G	A	148985600	3	1	39	1	0	0	0	0	1	0	0	0	864	1132	40	1	2300	1	ARHGAP10	4	148985600	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	8173997	148985600	42168676	17	2094										
GPR98	0	genome.wustl.edu	37	chr5	90052316	90052316	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gatttattgtcactatcactGaggtgaacctggtgaactct	9	8	3	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	90052316	90052316	G	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	nonsense	c.11626	p.E3876*	0.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	198	0	0	71	86	54.78	-	-	-	T	90052316	G	T	90052316	4	4	39	1	0	0	0	0	0	1	0	0	6772	1291	45	2	11848	2	GPR98	5	90052316	Nonsense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		90052316	90862944	18	2095										
TGFBI	0	genome.wustl.edu	37	chr5	135396550	135396550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	atgtggtgagtgtcaacaagGagcctgttgccgagcctgac	14	9	1	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	135396550	135396550	G	A	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.1831	p.E611K	0.997	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	130	0	0	87	12	12.12	-	-	-	A	135396550	G	A	135396550	3	1	39	1	0	0	0	0	1	0	0	0	15915	1175	41	2	1885	2	TGFBI	5	135396550	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	45344234	135396550	45518710	19	2096										
PDE6A	0	genome.wustl.edu	37	chr5	149310672	149310672	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	actgtgtacagggctttgtgGaactgtcgttcgatgtccgt	13	8	0	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	149310672	149310672	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	silent	c.777	p.F259	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	199	0	0	53	58	52.25	-	-	-	A	149310672	G	A	149310672	2	1	39	1	0	0	0	0	0	0	0	1	11718	1165	41	2		2	PDE6A	5	149310672	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	13914122	149310672	31604588	20	2097										
ACAT2	0	genome.wustl.edu	37	chr6	160189620	160189620	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gacagtatactctgtgatggTcttacagatgcatttcacaa	8	8	3	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160189620	160189620	T	A	SNP	ACAT2	ENST00000541436	human	ensembl	69_37n	1	known	silent	c.537	p.G179	0.983	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT2	HGNC	ENSG00000120437	256	0	0	124	141	53.21	-	-	-	A	160189620	T	A	160189620	2	1	39	1	0	0	0	0	0	0	0	1	122	1654	58	5		5	ACAT2	6	160189620	Silent	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09		160189620	10925447	21	2098										
IGF2R	0	genome.wustl.edu	37	chr6	160489290	160489290	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cttcttttcagagatggggcTggcaactccttcgacctctc	9	13	3	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160489290	160489290	T	C	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.4125	p.A1375	1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	102	1	0.97	63	10	13.7	-	-	-	C	160489290	T	C	160489290	2	2	39	1	0	0	0	0	0	0	0	1	7630	1567	55	5		5	IGF2R	6	160489290	Silent	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09	299670	160489290	10625777	22	2099										
ZSCAN21	0	genome.wustl.edu	37	chr7	99662245	99662245	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gggagaagcaccgtaactttCaagcgctcctgttgttgtcg	12	10	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	99662245	99662245	C	T	SNP	ZSCAN21	ENST00000543588	human	ensembl	69_37n	1	known	nonsense	c.1324	p.Q442*	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	185	0	0	148	29	16.38	-	-	-	T	99662245	C	T	99662245	4	4	39	1	0	0	0	0	0	1	0	0	18325	841	29	2		2	ZSCAN21	7	99662245	Nonsense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09		99662245	59476418	23	2100										
RNF133	0	genome.wustl.edu	37	chr7	122338268	122338268	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	actactcgaagttggagttgTccaaatgtgttctgaagatc	10	7	1	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	122338268	122338268	T	G	SNP	RNF133	ENST00000340112	human	ensembl	69_37n	-1	known	silent	c.705	p.G235	0.025	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF133	HGNC	ENSG00000188050	212	0	0	149	99	39.92	-	-	-	G	122338268	T	G	122338268	2	3	39	1	0	0	0	0	0	0	0	1	13525	1654	58	5		5	RNF133	7	122338268	Silent	SNP	T	TCGA-A2-A0D1-01A-11W-A050-09	22676023	122338268	36800395	24	2101										
C8orf40	0	genome.wustl.edu	37	chr8	42407725	42407725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agcagccacaaaaccaagctGacagtgtgcaactctcattg	8	12	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	42407725	42407725	G	A	SNP	C8orf40	ENST00000414154	human	ensembl	69_37n	1	known	missense	c.298	p.D100N	1.000	NULL	NULL	-	no_errors	C8orf40	HGNC	ENSG00000176209	152	0	0	559	179	24.25	-	-	-	A	42407725	G	A	42407725	3	1	39	1	0	0	0	0	1	0	0	0	2450	1290	45	2	308	2	C8orf40	8	42407725	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		42407725	103956297	25	2102										
YTHDF3	0	genome.wustl.edu	37	chr8	64087954	64087954	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gatgatgattttgagccataCttaagtagccagacaaatca	8	7	1	4			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	64087954	64087954	C	T	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	154	0	0	218	42	16.15	-	-	-	T	64087954	C	T	64087954	1	4	39	0	1	0	0	0	0	0	0	0	17597	576	20	4		4	YTHDF3	8	64087954	RNA	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	21680229	64087954	82276068	26	2103										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885215	88885215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gtcctggcccacggccgccaCgactccttcttcttcgttca	8	18	3	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	88885215	88885215	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.985	p.V329M	0.993	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	175	0	0	103	241	70.06	-	-	-	T	88885215	C	T	88885215	3	4	39	1	0	0	0	0	1	0	0	0	4304	536	19	1	206	1	DCAF4L2	8	88885215	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	24797261	88885215	57478807	27	2104										
LRP12	0	genome.wustl.edu	37	chr8	105503535	105503535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctgtatcatcagactccacgGaaaacaaacttctgtgagta	7	10	3	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	105503535	105503535	G	A	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.1889	p.S630F	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	168	0	0	306	64	17.3	-	-	-	A	105503535	G	A	105503535	3	1	39	1	0	0	0	0	1	0	0	0	9020	1174	41	2	637	2	LRP12	8	105503535	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	16618320	105503535	40860487	28	2105										
KIAA2026	0	genome.wustl.edu	37	chr9	6007235	6007235	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctgctccagcatcatctccaGcttctggccctgtttggaga	9	14	3	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	6007235	6007235	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	silent	c.553	p.L185	1.000	superfamily_Bromodomain	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	34	0	0	3	10	76.92	-	-	-	A	6007235	G	A	6007235	2	1	39	1	0	0	0	0	0	0	0	1	8322	962	34	4		4	KIAA2026	9	6007235	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		6007235	135206196	29	2106										
UNC13B	0	genome.wustl.edu	37	chr9	35231138	35231138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	taaatttaacacatatgtgaCcctgaaagtacagaatgtga	7	6	0	4			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	35231138	35231138	C	T	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.74	p.T25I	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	249	0	0	170	133	43.89	-	-	-	T	35231138	C	T	35231138	3	4	39	1	0	0	0	0	1	0	0	0	17082	507	18	4	84	4	UNC13B	9	35231138	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	29223903	35231138	105982293	30	2107										
BICD2	0	genome.wustl.edu	37	chr9	95481299	95481300	+	Frame_Shift_Ins	INS	-	-	G													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gggtgtctcattgttgcacaINStgcacacgtggtggtagaga							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	95481299	95481300	-	G	INS	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1628_1627	p.M543fs	1.000:1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	14	0	0	5	7	58.33	-	-	-	G	95481300	-	G	95481299	7	5	39	1	0	1	1	0	0	0	0	0	1434	217	8	0	961	0	BICD2	9	95481299	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	60250161	95481299	45732132	31	2108	21	2								
BICD2	0	genome.wustl.edu	37	chr9	95481305	95481306	+	Frame_Shift_Ins	INS	-	-	G													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctcattgttgcacatgcacaINScgtggtggtagagattggcc							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	95481305	95481306	-	G	INS	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1622_1621	p.V541fs	1.000:1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	15	0	0	6	7	53.85	-	-	-	G	95481306	-	G	95481305	7	5	39	1	0	1	1	0	0	0	0	0	1434	159	6	0	967	0	BICD2	9	95481305	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	6	95481305	45732126	32	2109	21	2								
GRIN1	0	genome.wustl.edu	37	chr9	140052856	140052856	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tgatgtcttccaagtatgcgGatggggtgactggtcgcgtg	16	7	1	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	140052856	140052856	G	C	SNP	GRIN1	ENST00000371561	human	ensembl	69_37n	1	known	missense	c.994	p.D332H	0.966	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884	26	0	0	1	6	85.71	-	-	-	C	140052856	G	C	140052856	3	2	39	1	0	0	0	0	1	0	0	0	6829	1174	41	2	1087	2	GRIN1	9	140052856	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	44571551	140052856	1160575	33	2110										
APBB1IP	0	genome.wustl.edu	37	chr10	26856303	26856304	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tggccaagaggcctcctgtgINSccccccaagaggcaagagaa							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	10	26856303	26856304	-	C	INS	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	frame_shift_ins	c.1887_1888	p.K631fs	0.012:0.995	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	14	0	0	6	2	25	-	-	-	C	26856304	-	C	26856303	7	5	39	1	0	1	1	0	0	0	0	0	761	1306	46	0	1937	0	APBB1IP	10	26856303	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09		26856303	108678444	34	2111										
MKI67	0	genome.wustl.edu	37	chr10	129921415	129921415	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	acaacaggaagctggatacgGatgtcacattcaatacccct	8	11	2	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	10	129921415	129921415	G	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	silent	c.111	p.I37	0.933	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	136	0	0	64	48	42.86	-	-	-	A	129921415	G	A	129921415	2	1	39	1	0	0	0	0	0	0	0	1	9669	1164	41	2		2	MKI67	10	129921415	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	103065112	129921415	5613332	35	2112										
CRY2	0	genome.wustl.edu	37	chr11	45882531	45882531	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	atggagagctgcagggccgaGatccaggagaaccacgacga	15	10	0	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	45882531	45882531	G	A	SNP	CRY2	ENST00000443527	human	ensembl	69_37n	1	known	silent	c.663	p.E221	1.000	superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	96	0	0	32	18	36	-	-	-	A	45882531	G	A	45882531	2	1	39	1	0	0	0	0	0	0	0	1	3934	933	33	2		2	CRY2	11	45882531	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		45882531	89123985	36	2113										
GYLTL1B	0	genome.wustl.edu	37	chr11	45945095	45945095	+	Frame_Shift_Del	DEL	G	G	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	atcaccctggtgaagtccatGctcttctacaggtacagcca							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	45945095	45945095	G	-	DEL	GYLTL1B	ENST00000325468	human	ensembl	69_37n	1	known	frame_shift_del	c.357	p.M119fs	0.970	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905	35	0	0	11	16	59.26	-	-	-	-	45945095	G	-	45945095	7	5	39	1	0	1	0	1	0	0	0	0	6958	1319	46	0	363	0	GYLTL1B	11	45945095	Frame_Shift_Del	DEL	G	TCGA-A2-A0D1-01A-11W-A050-09	62564	45945095	89061421	37	2114										
OR5A1	0	genome.wustl.edu	37	chr11	59211431	59211431	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cagcccttttcgtgtacttgCgacccagctccagctacttg	8	15	0	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	59211431	59211431	C	T	SNP	OR5A1	ENST00000302030	human	ensembl	69_37n	1	known	nonsense	c.790	p.R264*	0.337	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A1	HGNC	ENSG00000172320	522	0	0	284	244	46.12	-	-	-	T	59211431	C	T	59211431	4	4	39	1	0	0	0	0	0	1	0	0	11212	760	27	1	792	1	OR5A1	11	59211431	Nonsense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	13266336	59211431	75795085	38	2115										
CDC42BPG	0	genome.wustl.edu	37	chr11	64597451	64597451	+	Frame_Shift_Del	DEL	G	G	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agggcaaagagacgcacgctGgggccgcggccacacagcac							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	64597451	64597451	G	-	DEL	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	frame_shift_del	c.3459	p.S1154fs	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	17	0	0	3	4	57.14	-	-	-	-	64597451	G	-	64597451	7	5	39	1	0	1	0	1	0	0	0	0	3103	1335	47	0	1228	0	CDC42BPG	11	64597451	Frame_Shift_Del	DEL	G	TCGA-A2-A0D1-01A-11W-A050-09	5386020	64597451	70409065	39	2116										
ATG2A	0	genome.wustl.edu	37	chr11	64666107	64666107	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gatggtgcaggtcgctcataCcatgttagagtgggcacgtc	14	9	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	64666107	64666107	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	splice_site	c.4677+1	e32+1	1.000	-	-	-	no_errors	ATG2A	HGNC	ENSG00000110046	62	0	0	22	12	35.29	-	-	-	T	64666107	C	T	64666107	5	4	39	1	0	0	0	0	0	0	1	0	1097	521	18	4	1184	4	ATG2A	11	64666107	Splice_Site	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	68656	64666107	70340409	40	2117										
SHANK2	0	genome.wustl.edu	37	chr11	70332712	70332713	+	Frame_Shift_Ins	INS	-	-	A													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tttgggtccctgttgagactINSccttcatggctcggtccctt							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	70332712	70332713	-	A	INS	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3689_3688	p.E1230fs	1.000:1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	43	0	0	20	56	73.68	-	-	-	A	70332713	-	A	70332712	7	5	39	1	0	1	1	0	0	0	0	0	14354	1551	54	0	1871	0	SHANK2	11	70332712	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	5666605	70332712	64673804	41	2118	22	2								
SHANK2	0	genome.wustl.edu	37	chr11	70332718	70332718	+	Frame_Shift_Del	DEL	A	A	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gtccctgttgagactccttcAtggctcggtcccttgcggag							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	70332718	70332718	A	-	DEL	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	frame_shift_del	c.3683	p.M1228fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	42	0	0	15	50	76.92	-	-	-	-	70332718	A	-	70332718	7	5	39	1	0	1	0	1	0	0	0	0	14354	217	8	0	1877	0	SHANK2	11	70332718	Frame_Shift_Del	DEL	A	TCGA-A2-A0D1-01A-11W-A050-09	6	70332718	64673798	42	2119	22	2								
KCNA5	0	genome.wustl.edu	37	chr12	5153647	5153647	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gcacggtggaggaccaggctCtgggcacggcgtccctgcac	16	14	1	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	5153647	5153647	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	silent	c.334	p.L112	0.003	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	31	0	0	8	9	52.94	-	-	-	T	5153647	C	T	5153647	2	4	39	1	0	0	0	0	0	0	0	1	8060	912	32	2		2	KCNA5	12	5153647	Silent	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09		5153647	128698248	43	2120										
CLECL1	0	genome.wustl.edu	37	chr12	9885557	9885558	+	Frame_Shift_Ins	INS	-	-	A													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agcttaccagatctctgaagINStggaaacgcgagttctaacg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	9885557	9885558	-	A	INS	CLECL1	ENST00000327839	human	ensembl	69_37n	-1	known	frame_shift_ins	c.304_303	p.L101fs	0.003:0.002	NULL	superfamily_C-type_lectin_fold	-	no_errors	CLECL1	HGNC	ENSG00000184293	68	0	0	74	10	11.9	-	-	-	A	9885558	-	A	9885557	7	5	39	1	0	1	1	0	0	0	0	0	3553	1029	36	0	207	0	CLECL1	12	9885557	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	4731910	9885557	123966338	44	2121										
UBC	0	genome.wustl.edu	37	chr12	125396685	125396686	+	Frame_Shift_Ins	INS	-	-	G													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ggctccacttcgagagtgatINSggtcttaccagtcagggtct							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	125396685	125396686	-	G	INS	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1633_1632	p.I544fs	1.000:1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	63	0	0	7	4	36.36	-	-	-	G	125396686	-	G	125396685	7	5	39	1	0	1	1	0	0	0	0	0	16939	1464	51	0	428	0	UBC	12	125396685	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	115511128	125396685	8455210	45	2122										
EP400	0	genome.wustl.edu	37	chr12	132551918	132551919	+	Frame_Shift_Ins	INS	-	-	T													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gcctgcaggacagaccgtggINStggcccagcccgtgcacatg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	132551918	132551919	-	T	INS	EP400	ENST00000333577	human	ensembl	69_37n	1	known	frame_shift_ins	c.8869_8870	p.A2958fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	48	0	0	16	3	15.79	-	-	-	T	132551919	-	T	132551918	7	5	39	1	0	1	1	0	0	0	0	0	5186	1261	44	0	8952	0	EP400	12	132551918	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	7155233	132551918	1299977	46	2123										
CENPJ	0	genome.wustl.edu	37	chr13	25480533	25480533	+	Frame_Shift_Del	DEL	T	T	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cgtcaagagaagattcagacTctttcatggtctcccttatg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	13	25480533	25480533	T	-	DEL	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	frame_shift_del	c.1643	p.E548fs	0.001	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	118	0	0	61	25	28.74	-	-	-	-	25480533	T	-	25480533	7	5	39	1	0	1	0	1	0	0	0	0	3263	1551	54	0	2417	0	CENPJ	13	25480533	Frame_Shift_Del	DEL	T	TCGA-A2-A0D1-01A-11W-A050-09		25480533	89689345	47	2124										
UPF3A	0	genome.wustl.edu	37	chr13	115048384	115048385	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	acatccttctttttagagatINScgttttgatggatatatctt							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	13	115048384	115048385	-	C	INS	UPF3A	ENST00000375299	human	ensembl	69_37n	1	known	frame_shift_ins	c.387_388	p.R129fs	0.983:1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062	190	0	0	111	55	33.13	-	-	-	C	115048385	-	C	115048384	7	5	39	1	0	1	1	0	0	0	0	0	17102	1432	50	0	397	0	UPF3A	13	115048384	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	89567851	115048384	121494	48	2125										
TGM1	0	genome.wustl.edu	37	chr14	24724646	24724646	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tttgtgacaatgagtgtgccGatggccttctcctccacata	9	11	1	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	24724646	24724646	G	A	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	silent	c.1569	p.I523	0.920	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	86	0	0	40	19	32.2	-	-	-	A	24724646	G	A	24724646	2	1	39	1	0	0	0	0	0	0	0	1	15924	1048	37	1		1	TGM1	14	24724646	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		24724646	82624894	49	2126										
MNAT1	0	genome.wustl.edu	37	chr14	61285489	61285489	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tttggctcagcataaagataGatctacccaattagaaatgc	7	8	2	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	61285489	61285489	G	C	SNP	MNAT1	ENST00000261245	human	ensembl	69_37n	1	known	missense	c.611	p.R204T	1.000	pirsf_MAT1_metazoa,pfam_Cdk-activating_kinase_MAT1_cen,tigrfam_MAT1	pirsf_MAT1_metazoa,pfam_Cdk-activating_kinase_MAT1_cen,smart_Znf_RING,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING,tigrfam_MAT1	-	no_errors	MNAT1	HGNC	ENSG00000020426	192	0	0	244	37	13.17	-	-	-	C	61285489	G	C	61285489	3	2	39	1	0	0	0	0	1	0	0	0	9746	942	33	2	633	2	MNAT1	14	61285489	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	36560843	61285489	46064051	50	2127										
NUDT14	0	genome.wustl.edu	37	chr14	105639485	105639485	+	Frame_Shift_Del	DEL	A	A	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cttccaggggcaggtgcaccAcctcaatgagctcaccctcc							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	105639485	105639485	A	-	DEL	NUDT14	ENST00000392568	human	ensembl	69_37n	-1	known	frame_shift_del	c.542	p.V181fs	0.975	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	-	no_errors	NUDT14	HGNC	ENSG00000183828	8	0	0	5	8	61.54	-	-	-	-	105639485	A	-	105639485	7	5	39	1	0	1	0	1	0	0	0	0	10803	159	6	0	130	0	NUDT14	14	105639485	Frame_Shift_Del	DEL	A	TCGA-A2-A0D1-01A-11W-A050-09	44353996	105639485	1710055	51	2128										
PIF1	0	genome.wustl.edu	37	chr15	65110250	65110251	+	In_Frame_Ins	INS	-	-	GAA													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tccagcggtcagcgtggatgINSacctcagtgactccacacag							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	65110250	65110251	-	GAA	INS	PIF1	ENST00000333425	human	ensembl	69_37n	-1	known	in_frame_ins	c.1569_1568	p.524in_frame_insS	1.000:1.000	pfam_DNA_helicase_PIF1	pfam_DNA_helicase_PIF1,pfam_DNA_helicase	-	no_errors	PIF1	HGNC	ENSG00000140451	104	0	0	47	32	40.51	-	-	-	GAA	65110251	-	GAA	65110250	7	5	39	1	0	1	1	0	0	0	0	0	11957	1277	45	0	368	0	PIF1	15	65110250	In_Frame_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09		65110250	37421142	52	2129										
ISLR2	0	genome.wustl.edu	37	chr15	74425224	74425224	+	Frame_Shift_Del	DEL	T	T	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tgcgcttacaaagagttgcgTgaggtgccggaaggactgcc							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	74425224	74425224	T	-	DEL	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	frame_shift_del	c.129	p.E44fs	0.973	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	109	0	0	42	18	30	-	-	-	-	74425224	T	-	74425224	7	5	39	1	0	1	0	1	0	0	0	0	7913	1683	59	0	131	0	ISLR2	15	74425224	Frame_Shift_Del	DEL	T	TCGA-A2-A0D1-01A-11W-A050-09	9314974	74425224	28106168	53	2130										
NARFL	0	genome.wustl.edu	37	chr16	787259	787260	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cacggtctctgcggaggtgaINStgcagccgctgcacgccagg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	787259	787260	-	C	INS	NARFL	ENST00000251588	human	ensembl	69_37n	-1	known	frame_shift_ins	c.233_232	p.I78fs	1.000:1.000	superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245	16	0	0	11	10	47.62	-	-	-	C	787260	-	C	787259	7	5	39	1	0	1	1	0	0	0	0	0	10240	333	12	0	1233	0	NARFL	16	787259	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09		787259	89567494	54	2131										
UMOD	0	genome.wustl.edu	37	chr16	20357504	20357504	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ggtcactacagacacccagtCccggttgtctctgtcattga	9	13	3	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	20357504	20357504	C	A	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	missense	c.1225	p.D409Y	0.826	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	69	0	0	36	5	12.2	-	-	-	A	20357504	C	A	20357504	3	1	39	1	0	0	0	0	1	0	0	0	17076	855	30	2	824	2	UMOD	16	20357504	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	19570245	20357504	69997249	55	2132										
C16orf58	0	genome.wustl.edu	37	chr16	31510720	31510720	+	Frame_Shift_Del	DEL	G	G	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ctacgtcattgaggatgtccGcaaaaagcctggggagggat							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	31510720	31510720	G	-	DEL	C16orf58	ENST00000327237	human	ensembl	69_37n	-1	known	frame_shift_del	c.503	p.A168fs	1.000	pfam_DUF647	pfam_DUF647	-	no_errors	C16orf58	HGNC	ENSG00000140688	163	0	0	78	67	44.97	-	-	-	-	31510720	G	-	31510720	7	5	39	1	0	1	0	1	0	0	0	0	1835	1087	38	0	939	0	C16orf58	16	31510720	Frame_Shift_Del	DEL	G	TCGA-A2-A0D1-01A-11W-A050-09	11153216	31510720	58844033	56	2133										
SALL1	0	genome.wustl.edu	37	chr16	51174941	51174941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gctggggaaaaccgagttagCggaggcttgctgaggtagaa	17	6	0	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	51174941	51174941	C	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.1192	p.A398T	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	246	1	0.4	217	26	10.66	-	-	-	T	51174941	C	T	51174941	3	4	39	1	0	0	0	0	1	0	0	0	13896	768	27	1	2790	1	SALL1	16	51174941	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	19664221	51174941	39179812	57	2134										
KATNB1	0	genome.wustl.edu	37	chr16	57790846	57790847	+	Frame_Shift_Ins	INS	-	-	G													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	agctgcacctgctcatggccINSagtctggactgaggaaagca							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	57790846	57790847	-	G	INS	KATNB1	ENST00000379661	human	ensembl	69_37n	1	known	frame_shift_ins	c.1956_1957	p.S652fs	0.868:0.394	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854	8	0	0	3	7	70	-	-	-	G	57790847	-	G	57790846	7	5	39	1	0	1	1	0	0	0	0	0	8041	581	21	0	2030	0	KATNB1	16	57790846	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	6615905	57790846	32563907	58	2135										
TP53	0	genome.wustl.edu	37	chr17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ggtcccaagacttagtacctGaagggtgaaatattctccat	9	9	1	3			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	7576855	7576855	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	0.999	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	575	0	0	50	168	77.06	-	-	-	A	7576855	G	A	7576855	4	1	39	1	0	0	0	0	0	1	0	0	16477	1299	45	2	291	2	TP53	17	7576855	Nonsense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		7576855	73618355	59	2136										
HELZ	0	genome.wustl.edu	37	chr17	65184713	65184713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	catcataaagcaatgctacaCgatacagcattcttgcaggc	7	11	2	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	65184713	65184713	C	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.884	p.R295H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	57	0	0	14	50	78.12	-	-	-	T	65184713	C	T	65184713	3	4	39	1	0	0	0	0	1	0	0	0	7100	536	19	1	5032	1	HELZ	17	65184713	Missense_Mutation	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09	57607858	65184713	16010497	60	2137										
MUC16	0	genome.wustl.edu	37	chr19	9084121	9084121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	gaatggctttgctttcactcGtagtgagaagactggcttct	11	8	2	2			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	9084121	9084121	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.7694	p.T2565M	0.183	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	738	1	0.14	606	236	28.03	-	-	-	A	9084121	G	A	9084121	3	1	39	1	0	0	0	0	1	0	0	0	10045	1145	40	1	36165	1	MUC16	19	9084121	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09		9084121	50044862	61	2138										
FFAR1	0	genome.wustl.edu	37	chr19	35843061	35843061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ccatcacagccttctgctacGtgggctgcctccgggcactg	11	16	2	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	35843061	35843061	G	A	SNP	FFAR1	ENST00000246553	human	ensembl	69_37n	1	known	missense	c.607	p.V203M	0.998	pfam_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR40_recept_FA,prints_GPR40-rel_recept,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	FFAR1	HGNC	ENSG00000126266	35	0	0	0	7	100	-	-	-	A	35843061	G	A	35843061	3	1	39	1	0	0	0	0	1	0	0	0	5873	1145	40	1	609	1	FFAR1	19	35843061	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	26758940	35843061	23285922	62	2139										
ECH1	0	genome.wustl.edu	37	chr19	39306943	39306943	+	Frame_Shift_Del	DEL	G	G	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cctgaccagcccactgcccaGggcctcgtcagccatcatct							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	39306943	39306943	G	-	DEL	ECH1	ENST00000221418	human	ensembl	69_37n	-1	known	frame_shift_del	c.712	p.L238fs	0.998	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECH1	HGNC	ENSG00000104823	113	0	0	31	15	31.25	-	-	-	-	39306943	G	-	39306943	7	5	39	1	0	1	0	1	0	0	0	0	4927	991	35	0	286	0	ECH1	19	39306943	Frame_Shift_Del	DEL	G	TCGA-A2-A0D1-01A-11W-A050-09	3463882	39306943	19822040	63	2140										
PLEKHG2	0	genome.wustl.edu	37	chr19	39905655	39905656	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tgcagcccccaccatggcctINSccccccgaggttctgggagc							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	39905655	39905656	-	C	INS	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	frame_shift_ins	c.133_134	p.R47fs	1.000:1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	15	0	0	6	3	33.33	-	-	-	C	39905656	-	C	39905655	7	5	39	1	0	1	1	0	0	0	0	0	12143	1551	54	0	139	0	PLEKHG2	19	39905655	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09	598712	39905655	19223328	64	2141										
CELSR1	0	genome.wustl.edu	37	chr22	46929574	46929575	+	Frame_Shift_Ins	INS	-	-	C													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cggccggttgttgtccaggtINScgcggctgagctgcagttcg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	22	46929574	46929575	-	C	INS	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3494_3493	p.D1165fs	1.000:1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	16	0	0	4	3	42.86	-	-	-	C	46929575	-	C	46929574	7	5	39	1	0	1	1	0	0	0	0	0	3250	1667	58	0	5690	0	CELSR1	22	46929574	Frame_Shift_Ins	INS	-	TCGA-A2-A0D1-01A-11W-A050-09		46929574	4374992	65	2142										
PDHA1	0	genome.wustl.edu	37	chrX	19371264	19371264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	atgtatgccaagaacttctaCgggggcaatggcatcgtggg	14	8	1	1			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	19371264	19371264	C	T	SNP	PDHA1	ENST00000379806	human	ensembl	69_37n	1	known	silent	c.597	p.Y199	0.996	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828	446	0	0	268	75	21.8	-	-	-	T	19371264	C	T	19371264	2	4	39	1	0	0	0	0	0	0	0	1	11737	547	19	1		1	PDHA1	23	19371264	Silent	SNP	C	TCGA-A2-A0D1-01A-11W-A050-09		19371264	135899296	66	2143										
SLC7A3	0	genome.wustl.edu	37	chrX	70149701	70149701	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tcgccagctaggacatacacGcctgcacccaatgtgctgcc	9	16	0	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	70149701	70149701	G	A	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	silent	c.147	p.G49	0.540	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	108	0	0	40	16	27.12	-	-	-	A	70149701	G	A	70149701	2	1	39	1	0	0	0	0	0	0	0	1	14787	1074	38	1		1	SLC7A3	23	70149701	Silent	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	50778437	70149701	85120859	67	2144										
NXF3	0	genome.wustl.edu	37	chrX	102339332	102339332	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	cccctccattcttctctctgGaggtttttgctctctctcca	5	16	5	0			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	102339332	102339332	G	C	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.289	p.P97A	0.143	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	362	0	0	173	91	34.34	-	-	-	C	102339332	G	C	102339332	3	2	39	1	0	0	0	0	1	0	0	0	10858	1174	41	2	1374	2	NXF3	23	102339332	Missense_Mutation	SNP	G	TCGA-A2-A0D1-01A-11W-A050-09	32189631	102339332	52931228	68	2145										
ZCCHC12	0	genome.wustl.edu	37	chrX	117959686	117959686	+	Frame_Shift_Del	DEL	T	T	-													0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	ggtgcagctccagaacgctaTtcaggcaggcattatagctg							TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	117959686	117959686	T	-	DEL	ZCCHC12	ENST00000310164	human	ensembl	69_37n	1	known	frame_shift_del	c.479	p.Q161fs	0.986	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	156	0	0	118	135	53.36	-	-	-	-	117959686	T	-	117959686	7	5	39	1	0	1	0	1	0	0	0	0	17677	1493	52	0	481	0	ZCCHC12	23	117959686	Frame_Shift_Del	DEL	T	TCGA-A2-A0D1-01A-11W-A050-09	15620354	117959686	37310874	69	2146										
IDH3G	0	genome.wustl.edu	37	chrX	153055671	153055671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.149253731343284	10	0.082069619543579	2.0388986013986	3.91468531468531	1.69153069153069	0.19838056680162	0.775741978420459	0	tgaagacggacttgacatgcAgcatgagctctggcccgatg	13	10	1	4			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	153055671	153055671	A	G	SNP	IDH3G	ENST00000217901	human	ensembl	69_37n	-1	known	missense	c.212	p.L71P	0.943	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829	46	0	0	15	9	37.5	-	-	-	G	153055671	A	G	153055671	3	3	39	1	0	0	0	0	1	0	0	0	7552	188	7	5	1072	5	IDH3G	23	153055671	Missense_Mutation	SNP	A	TCGA-A2-A0D1-01A-11W-A050-09	35095985	153055671	2214889	70	2147										
PABPC4	0	genome.wustl.edu	37	chr1	40027754	40027754	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ccccagctcaccttggagcgGagagactcgggggactctaa	13	13	2	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	40027754	40027754	G	C	SNP	PABPC4	ENST00000530186	human	ensembl	69_37n	-1	known	missense	c.107	p.S36C	1.000	pfam_PABP_HYD,superfamily_PABP_HYD,smart_PABP_HYD	pfam_PABP_HYD,superfamily_PABP_HYD,smart_PABP_HYD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PABPC4	HGNC	ENSG00000090621	118	0	0	61	11	15.28	-	-	-	C	40027754	G	C	40027754	3	2	40	1	0	0	0	0	1	0	0	0	11439	1161	41	2	106	2	PABPC4	1	40027754	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		40027754	209222867	1	2148										
MSH4	0	genome.wustl.edu	37	chr1	76365305	76365305	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	taaaacaaataattctaggaTtaaaagctgcagaggtgtca	8	5	2	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	76365305	76365305	T	C	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	silent	c.2533	p.L845	0.971	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	103	0	0	115	21	15.44	-	-	-	C	76365305	T	C	76365305	2	2	40	1	0	0	0	0	0	0	0	1	9944	1490	52	5		5	MSH4	1	76365305	Silent	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09	36337551	76365305	172885316	2	2149										
CLCA1	0	genome.wustl.edu	37	chr1	86951084	86951084	+	Frame_Shift_Del	DEL	A	A	-													0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	agctccaaacaagcaaaatcAaaaatgcaatctccgaagca							TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	86951084	86951084	A	-	DEL	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	frame_shift_del	c.794	p.K266fs	0.040	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	233	0	0	216	56	20.51	-	-	-	-	86951084	A	-	86951084	7	5	40	1	0	1	0	1	0	0	0	0	3487	130	5	0	816	0	CLCA1	1	86951084	Frame_Shift_Del	DEL	A	TCGA-A2-A0D2-01A-21W-A050-09	10585779	86951084	162299537	3	2150										
LRRC8C	0	genome.wustl.edu	37	chr1	90178433	90178433	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aaatgaaaggcctgaagacaGatttggaccttcagcagtac	10	8	1	4			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	90178433	90178433	G	C	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.304	p.D102H	0.559	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	156	1	0.64	103	56	35.22	-	-	-	C	90178433	G	C	90178433	3	2	40	1	0	0	0	0	1	0	0	0	9089	942	33	2	310	2	LRRC8C	1	90178433	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	3227349	90178433	159072188	4	2151										
BCAR3	0	genome.wustl.edu	37	chr1	94054925	94054925	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aaagttcccagggctggacaGagagtcacgaactaggaagt	13	8	1	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	94054925	94054925	G	T	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.538	p.L180M	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	67	0	0	73	22	23.16	-	-	-	T	94054925	G	T	94054925	3	4	40	1	0	0	0	0	1	0	0	0	1353	933	33	2	1971	2	BCAR3	1	94054925	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	3876492	94054925	155195696	5	2152										
CD46	0	genome.wustl.edu	37	chr1	207940997	207940997	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tccagctttgagtcattcagGtttagtagcttcttccttat	7	9	3	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	207940997	207940997	G	C	SNP	CD46	ENST00000322875	human	ensembl	69_37n	1	known	splice_site	c.901+1	e7+1	0.606	-	-	-	no_errors	CD46	HGNC	ENSG00000117335	402	0	0	596	142	19.22	-	-	-	C	207940997	G	C	207940997	5	2	40	1	0	0	0	0	0	0	1	0	3047	1275	44	4	928	4	CD46	1	207940997	Splice_Site	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	113886072	207940997	41309624	6	2153										
CHRM3	0	genome.wustl.edu	37	chr1	240071942	240071942	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtgcctgaggaggagctgggGatggtggacttggagaggaa	21	4	0	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	240071942	240071942	G	T	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	silent	c.1191	p.G397	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	65	0	0	62	17	21.52	-	-	-	T	240071942	G	T	240071942	2	4	40	1	0	0	0	0	0	0	0	1	3407	1161	41	2		2	CHRM3	1	240071942	Silent	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	32130945	240071942	9178679	7	2154										
AHCTF1	0	genome.wustl.edu	37	chr1	247014469	247014469	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtgttagctgctttaggtaaCacatcagatgatgcaaaatc	9	7	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	1	247014469	247014469	C	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.4866	p.V1622	0.143	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	107	0	0	188	56	22.95	-	-	-	G	247014469	C	G	247014469	2	3	40	1	0	0	0	0	0	0	0	1	408	465	17	4		4	AHCTF1	1	247014469	Silent	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	6942527	247014469	2236152	8	2155										
PUM2	0	genome.wustl.edu	37	chr2	20483175	20483175	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gaactggagctccaaggccaGtccttgctccagggccaacc	11	15	0	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	2	20483175	20483175	G	C	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.1364	p.T455S	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	177	0	0	90	56	38.1	-	-	-	C	20483175	G	C	20483175	3	2	40	1	0	0	0	0	1	0	0	0	12909	1029	36	4	1874	4	PUM2	2	20483175	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		20483175	222716198	9	2156										
CAPN13	0	genome.wustl.edu	37	chr2	30987066	30987066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	cttcactgccttcaccaggtCcacaggggaagagtgcagat	11	12	2	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	2	30987066	30987066	C	T	SNP	CAPN13	ENST00000295055	human	ensembl	69_37n	-1	known	missense	c.631	p.D211N	0.002	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	170	0	0	50	20	28.57	-	-	-	T	30987066	C	T	30987066	3	4	40	1	0	0	0	0	1	0	0	0	2651	855	30	2	1446	2	CAPN13	2	30987066	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	10503891	30987066	212212307	10	2157										
SCN3A	0	genome.wustl.edu	37	chr2	165997183	165997183	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ctgggggaagttgtccagtaGgtgacgttagagctgaaggt	17	5	0	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	2	165997183	165997183	G	C	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.1997	p.P666R	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	199	0	0	112	41	26.8	-	-	-	C	165997183	G	C	165997183	3	2	40	1	0	0	0	0	1	0	0	0	14006	1000	35	4	4069	4	SCN3A	2	165997183	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	135010117	165997183	77202190	11	2158										
PIKFYVE	0	genome.wustl.edu	37	chr2	209190734	209190734	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tcacattccgagaaccctttCttttaactgaaaaggggatg	8	9	2	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	2	209190734	209190734	C	G	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.3199	p.L1067V	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	75	0	0	95	39	28.89	-	-	-	G	209190734	C	G	209190734	3	3	40	1	0	0	0	0	1	0	0	0	11998	913	32	2	3284	2	PIKFYVE	2	209190734	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	43193551	209190734	34008639	12	2159										
SLC25A38	0	genome.wustl.edu	37	chr3	39436042	39436042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	actgaagtttcaatggattgGccaagcagtgacacttattt	9	7	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	39436042	39436042	G	A	SNP	SLC25A38	ENST00000273158	human	ensembl	69_37n	1	known	missense	c.767	p.G256D	0.999	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A38	HGNC	ENSG00000144659	129	0	0	70	24	25.53	-	-	-	A	39436042	G	A	39436042	3	1	40	1	0	0	0	0	1	0	0	0	14591	1203	42	4	789	4	SLC25A38	3	39436042	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		39436042	158586388	13	2160										
PBRM1	0	genome.wustl.edu	37	chr3	52651338	52651338	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	atcagcttcatgtcttctatCattccctcttcaccagcata	3	14	7	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	52651338	52651338	C	T	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	missense	c.1758	p.M586I	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	195	0	0	118	48	28.92	-	-	-	T	52651338	C	T	52651338	3	4	40	1	0	0	0	0	1	0	0	0	11564	826	29	2	3210	2	PBRM1	3	52651338	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	13215296	52651338	145371092	14	2161										
CD86	0	genome.wustl.edu	37	chr3	121825277	121825277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtttcattccctgatgttacGagcaatatgaccatcttctg	7	10	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	121825277	121825277	G	C	SNP	CD86	ENST00000478741	human	ensembl	69_37n	1	novel	missense	c.619	p.E207Q	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD86	HGNC	ENSG00000114013	256	0	0	162	70	30.17	-	-	-	C	121825277	G	C	121825277	3	2	40	1	0	0	0	0	1	0	0	0	3072	1045	37	3	647	3	CD86	3	121825277	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	69173939	121825277	76197153	15	2162										
CASR	0	genome.wustl.edu	37	chr3	122002718	122002718	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtgtttatcaagttccgcaaCacacccattgtcaaggccac	7	13	2	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	122002718	122002718	C	A	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.1947	p.N649K	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	254	0	0	110	48	30.38	-	-	-	A	122002718	C	A	122002718	3	1	40	1	0	0	0	0	1	0	0	0	2707	477	17	4	1969	4	CASR	3	122002718	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	177441	122002718	76019712	16	2163										
KLHL6	0	genome.wustl.edu	37	chr3	183225935	183225935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgagaggatctgcttccaccGtctccacaaagtaccacggg	10	13	2	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	183225935	183225935	G	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	missense	c.821	p.T274M	0.924	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	282	0	0	92	92	49.73	-	-	-	A	183225935	G	A	183225935	3	1	40	1	0	0	0	0	1	0	0	0	8446	1145	40	1	1064	1	KLHL6	3	183225935	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	61223217	183225935	14796495	17	2164										
TP63	0	genome.wustl.edu	37	chr3	189608638	189608638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ttcacgacccaggggctgacCaccatctatcagattgagca	9	13	3	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	3	189608638	189608638	C	T	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	silent	c.1713	p.T571	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	212	0	0	161	70	30.3	-	-	-	T	189608638	C	T	189608638	2	4	40	1	0	0	0	0	0	0	0	1	16488	581	21	4		4	TP63	3	189608638	Silent	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	6382703	189608638	8413792	18	2165										
FRAS1	0	genome.wustl.edu	37	chr4	79353539	79353539	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ttcacctatgaggatgttgaGaaaaatgctctacagtatat	8	6	2	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	4	79353539	79353539	G	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.4998	p.E1666D	0.769	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	107	0	0	92	42	31.34	-	-	-	C	79353539	G	C	79353539	3	2	40	1	0	0	0	0	1	0	0	0	6090	933	33	2	5148	2	FRAS1	4	79353539	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		79353539	111800737	19	2166										
INPP4B	0	genome.wustl.edu	37	chr4	143129611	143129611	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gctgtgtacctgcattctttGcagatgtagatttattggaa	10	6	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	4	143129611	143129611	G	C	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.1039	p.Q347E	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	146	0	0	156	45	22.39	-	-	-	C	143129611	G	C	143129611	3	2	40	1	0	0	0	0	1	0	0	0	7807	1328	46	4	1787	4	INPP4B	4	143129611	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	63776072	143129611	48024665	20	2167										
DAB2	0	genome.wustl.edu	37	chr5	39377250	39377250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgaaacagctggacttgtacCaaaaatgacgggctgactaa	10	8	0	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	5	39377250	39377250	C	T	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	missense	c.1639	p.G547S	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	172	0	0	112	29	20.57	-	-	-	T	39377250	C	T	39377250	3	4	40	1	0	0	0	0	1	0	0	0	4250	594	21	4	685	4	DAB2	5	39377250	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09		39377250	141538010	21	2168										
CENPK	0	genome.wustl.edu	37	chr5	64850678	64850678	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ctaataagttcttcttcagtAtttgtaacatctcccacatc	3	11	4	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	5	64850678	64850678	A	G	SNP	CENPK	ENST00000242872	human	ensembl	69_37n	-1	known	silent	c.57	p.N19	0.007	pfam_Centromere_CenpK	pfam_Centromere_CenpK,superfamily_Prefoldin	-	no_errors	CENPK	HGNC	ENSG00000123219	275	0	0	157	77	32.91	-	-	-	G	64850678	A	G	64850678	2	3	40	1	0	0	0	0	0	0	0	1	3264	446	16	5		5	CENPK	5	64850678	Silent	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	25473428	64850678	116064582	22	2169										
GCNT4	0	genome.wustl.edu	37	chr5	74325681	74325681	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgacttcatccttaacatgaGtgtatctgtttcttacaaaa	5	8	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	5	74325681	74325681	G	C	SNP	GCNT4	ENST00000322348	human	ensembl	69_37n	-1	known	missense	c.182	p.T61S	0.129	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928	108	0	0	72	33	31.43	-	-	-	C	74325681	G	C	74325681	3	2	40	1	0	0	0	0	1	0	0	0	6353	1029	36	4	1183	4	GCNT4	5	74325681	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	9475003	74325681	106589579	23	2170										
LRFN2	0	genome.wustl.edu	37	chr6	40400824	40400824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	cggcaaacgccatgccaaacGctagcaggccaccaagcagg	11	15	0	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	6	40400824	40400824	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	missense	c.29	p.A10V	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	38	0	0	11	12	52.17	-	-	-	A	40400824	G	A	40400824	3	1	40	1	0	0	0	0	1	0	0	0	9004	1087	38	1	2348	1	LRFN2	6	40400824	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		40400824	130714243	24	2171										
PTK7	0	genome.wustl.edu	37	chr6	43100201	43100201	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgagccacgggtgtttacagCtggcagcgaggagcgtgtga	17	8	0	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	6	43100201	43100201	C	A	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	missense	c.1004	p.A335D	0.958	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	47	0	0	14	8	36.36	-	-	-	A	43100201	C	A	43100201	3	1	40	1	0	0	0	0	1	0	0	0	12846	797	28	4	1030	4	PTK7	6	43100201	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	2699377	43100201	128014866	25	2172										
TDRD6	0	genome.wustl.edu	37	chr6	46659314	46659314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgacaatattcaaattagtgCtagtattaataagaagttgg	8	3	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	6	46659314	46659314	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.3449	p.A1150V	0.990	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	59	0	0	52	9	14.75	-	-	-	T	46659314	C	T	46659314	3	4	40	1	0	0	0	0	1	0	0	0	15829	797	28	4	3451	4	TDRD6	6	46659314	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	3559113	46659314	124455753	26	2173										
IMPG1	0	genome.wustl.edu	37	chr6	76657075	76657075	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgtctatttccagatggagtTgttgggctgcagcagaacga	13	7	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	6	76657075	76657075	T	C	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.2000	p.Q667R	0.001	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	201	0	0	164	41	20	-	-	-	C	76657075	T	C	76657075	3	2	40	1	0	0	0	0	1	0	0	0	7782	1812	63	5	409	5	IMPG1	6	76657075	Missense_Mutation	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09	29997761	76657075	94457992	27	2174										
CARD11	0	genome.wustl.edu	37	chr7	2959046	2959046	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gcccatatccaggtcatggtCtgtgaaagggtcgacccgcg	13	12	2	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	2959046	2959046	C	G	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.2470	p.D824H	0.849	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	70	0	0	24	15	38.46	-	-	-	G	2959046	C	G	2959046	3	3	40	1	0	0	0	0	1	0	0	0	2670	913	32	2	1026	2	CARD11	7	2959046	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09		2959046	156179617	28	2175										
HDAC9	0	genome.wustl.edu	37	chr7	19035653	19035653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tttatttttacagaactgctGgtgagcctatggaagaggag	12	5	0	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	19035653	19035653	G	A	SNP	HDAC9	ENST00000441542	human	ensembl	69_37n	1	known	missense	c.3178	p.G1060S	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	592	0	0	381	137	26.45	-	-	-	A	19035653	G	A	19035653	3	1	40	1	0	0	0	0	1	0	0	0	7065	1348	47	4	3412	4	HDAC9	7	19035653	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	16076607	19035653	140103010	29	2176										
GHRHR	0	genome.wustl.edu	37	chr7	31014652	31014652	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gggcccattgtcctctcggtCggggtcagtccctgggccag	15	14	2	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	31014652	31014652	C	G	SNP	GHRHR	ENST00000409233	human	ensembl	69_37n	1	putative	missense	c.241	p.R81G	0.780	NULL	NULL	-	no_errors	GHRHR	HGNC	ENSG00000106128	497	0	0	142	67	32.06	-	-	-	G	31014652	C	G	31014652	3	3	40	1	0	0	0	0	1	0	0	0	6425	871	31	3	913	3	GHRHR	7	31014652	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	11978999	31014652	128124011	30	2177										
RELN	0	genome.wustl.edu	37	chr7	103113311	103113311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgttgtagaaatgtctgagcCcatgttgtcgtgaaaaattc	10	6	1	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	103113311	103113311	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.10331	p.G3444E	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	247	0	0	304	142	31.84	-	-	-	T	103113311	C	T	103113311	3	4	40	1	0	0	0	0	1	0	0	0	13303	623	22	4	55	4	RELN	7	103113311	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	72098659	103113311	56025352	31	2178										
DOCK4	0	genome.wustl.edu	37	chr7	111846181	111846181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gccgtatttctcgtgctccgTaggtatccacatggctaaag	10	11	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	111846181	111846181	T	C	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.13	p.T5A	1.000	superfamily_SH3_domain	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	71	0	0	42	13	23.64	-	-	-	C	111846181	T	C	111846181	3	2	40	1	0	0	0	0	1	0	0	0	4724	1638	57	5	6095	5	DOCK4	7	111846181	Missense_Mutation	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09	8732870	111846181	47292482	32	2179										
ARHGEF5	0	genome.wustl.edu	37	chr7	144061204	144061204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	acctgacaaggaaatagatcAaaacagccagcaagaggaat	9	8	1	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	7	144061204	144061204	A	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.1442	p.Q481R	0.025	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	22	0	0	20	7	25.93	-	-	-	G	144061204	A	G	144061204	3	3	40	1	0	0	0	0	1	0	0	0	911	130	5	5	1444	5	ARHGEF5	7	144061204	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	32215023	144061204	15077459	33	2180										
TRIM55	0	genome.wustl.edu	37	chr8	67062591	67062591	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ttgcagaatctcggaagcatCaaaggcatttcagatggaga	11	7	3	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	8	67062591	67062591	C	G	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	nonsense	c.875	p.S292*	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	280	0	0	307	99	24.26	-	-	-	G	67062591	C	G	67062591	4	3	40	1	0	0	0	0	0	1	0	0	16625	838	29	2	901	2	TRIM55	8	67062591	Nonsense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09		67062591	79301431	34	2181										
ZFP41	0	genome.wustl.edu	37	chr8	144332310	144332310	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gggcggatctttaagcacaaGacagaccacattcgccatca	9	12	2	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	8	144332310	144332310	G	C	SNP	ZFP41	ENST00000330701	human	ensembl	69_37n	1	known	missense	c.297	p.K99N	0.084	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	Clone_based_vega_gene	ENSG00000181638	80	0	0	38	14	26.92	-	-	-	C	144332310	G	C	144332310	3	2	40	1	0	0	0	0	1	0	0	0	17745	933	33	2	299	2	ZFP41	8	144332310	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	77269719	144332310	2031712	35	2182										
SLC39A12	0	genome.wustl.edu	37	chr10	18292185	18292185	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	agctccctaactgccttcatGggattatacattggcctttc	7	12	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	10	18292185	18292185	G	T	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.1845	p.M615I	0.093	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	237	0	0	181	52	22.22	-	-	-	T	18292185	G	T	18292185	3	4	40	1	0	0	0	0	1	0	0	0	14704	1348	47	4	1887	4	SLC39A12	10	18292185	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		18292185	117242562	36	2183										
TET1	0	genome.wustl.edu	37	chr10	70406740	70406740	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tctataactaaagattctgaActgcccacctgcagctgtct	6	12	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	10	70406740	70406740	A	G	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.4254	p.E1418	0.007	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	116	0	0	55	28	33.73	-	-	-	G	70406740	A	G	70406740	2	3	40	1	0	0	0	0	0	0	0	1	15864	40	2	5		5	TET1	10	70406740	Silent	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	52114555	70406740	65128007	37	2184										
OR52R1	0	genome.wustl.edu	37	chr11	4825420	4825420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tggccagcatggccagaaagAggtacatgggctcatgcagg	15	9	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	4825420	4825420	A	T	SNP	OR52R1	ENST00000380382	human	ensembl	69_37n	-1	known	missense	c.428	p.L143H	0.992	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937	211	0	0	96	33	25.38	-	-	-	T	4825420	A	T	4825420	3	4	40	1	0	0	0	0	1	0	0	0	11204	304	11	5	759	5	OR52R1	11	4825420	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09		4825420	130181096	38	2185										
OR10Q1	0	genome.wustl.edu	37	chr11	57995968	57995968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gcgggtggcagatagccacaTagcggtcataggccatgatc	14	10	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	57995968	57995968	T	A	SNP	OR10Q1	ENST00000316770	human	ensembl	69_37n	-1	known	missense	c.380	p.Y127F	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475	372	0	0	197	60	23.35	-	-	-	A	57995968	T	A	57995968	3	1	40	1	0	0	0	0	1	0	0	0	10989	1406	49	5	583	5	OR10Q1	11	57995968	Missense_Mutation	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09	53170548	57995968	77010548	39	2186										
GLYATL2	0	genome.wustl.edu	37	chr11	58602060	58602060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aagatacttttcaagatgatAaccaatttgcaacatgttgc	6	7	1	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	58602060	58602060	A	G	SNP	GLYATL2	ENST00000287275	human	ensembl	69_37n	-1	known	missense	c.727	p.Y243H	0.000	pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL2	HGNC	ENSG00000156689	203	0	0	221	82	27.06	-	-	-	G	58602060	A	G	58602060	3	3	40	1	0	0	0	0	1	0	0	0	6533	362	13	5	161	5	GLYATL2	11	58602060	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	606092	58602060	76404456	40	2187										
SUV420H1	0	genome.wustl.edu	37	chr11	67926140	67926140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tatagccattcaacgtatttGgttcaagcttgatgtcagag	9	7	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	67926140	67926140	G	T	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.1673	p.P558Q	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	66	0	0	113	38	25	-	-	-	T	67926140	G	T	67926140	3	4	40	1	0	0	0	0	1	0	0	0	15505	1348	47	4	988	4	SUV420H1	11	67926140	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	9324080	67926140	67080376	41	2188										
PAAF1	0	genome.wustl.edu	37	chr11	73627700	73627700	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tatcagctggatgtgaggagTccaaggtgagtcaccattca	12	8	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	73627700	73627700	T	C	SNP	PAAF1	ENST00000310571	human	ensembl	69_37n	1	known	silent	c.930	p.S310	0.563	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAAF1	HGNC	ENSG00000175575	101	0	0	102	34	25	-	-	-	C	73627700	T	C	73627700	2	2	40	1	0	0	0	0	0	0	0	1	11435	1664	58	5		5	PAAF1	11	73627700	Silent	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09	5701560	73627700	61378816	42	2189										
CARD17	0	genome.wustl.edu	37	chr11	104971342	104971342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tttccgaataacagagtcaaGcaaagctcgggccttatcca	8	11	1	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	104971342	104971342	G	T	SNP	CARD17	ENST00000375707	human	ensembl	69_37n	-1	known	missense	c.172	p.L58I	0.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD17	HGNC	ENSG00000255221	522	0	0	254	118	31.72	-	-	-	T	104971342	G	T	104971342	3	4	40	1	0	0	0	0	1	0	0	0	2673	971	34	4	168	4	CARD17	11	104971342	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	31343642	104971342	30035174	43	2190										
ROBO3	0	genome.wustl.edu	37	chr11	124742417	124742417	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtcagtgtggctggcagcatCctggccaaggccctgctgga	15	12	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	124742417	124742417	C	T	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	silent	c.1299	p.I433	0.966	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	120	0	0	39	14	26.42	-	-	-	T	124742417	C	T	124742417	2	4	40	1	0	0	0	0	0	0	0	1	13601	845	30	2		2	ROBO3	11	124742417	Silent	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	19771075	124742417	10264099	44	2191										
DDX25	0	genome.wustl.edu	37	chr11	125787146	125787146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	caggccatcatcttctgccaGgtacactctgtggatgtgtc	10	12	4	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	11	125787146	125787146	G	A	SNP	DDX25	ENST00000526875	human	ensembl	69_37n	1	novel	missense	c.808	p.D270N	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX25	HGNC	ENSG00000109832	34	0	0	42	11	20.75	-	-	-	A	125787146	G	A	125787146	3	1	40	1	0	0	0	0	1	0	0	0	4383	1014	35	4	1072	4	DDX25	11	125787146	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	1044729	125787146	9219370	45	2192										
PHC1	0	genome.wustl.edu	37	chr12	9085307	9085307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tcccagctccttcacacagcTacacacctccagttggcgca	6	18	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	12	9085307	9085307	T	C	SNP	PHC1	ENST00000537610	human	ensembl	69_37n	1	novel	missense	c.161	p.L54P	0.176	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	PHC1	HGNC	ENSG00000111752	666	2	0.3	219	69	23.88	-	-	-	C	9085307	T	C	9085307	3	2	40	1	0	0	0	0	1	0	0	0	11890	1509	53	5	1280	5	PHC1	12	9085307	Missense_Mutation	SNP	T	TCGA-A2-A0D2-01A-21W-A050-09		9085307	124766588	46	2193										
ACTN1	0	genome.wustl.edu	37	chr14	69343865	69343865	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtatctgtgtcggctgtctcGcgggacatgaagtcaatgaa	13	8	3	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	14	69343865	69343865	G	C	SNP	ACTN1	ENST00000555075	human	ensembl	69_37n	-1	putative	missense	c.530	p.A177G	0.077	pfscan_EF_HAND_2	pfam_EF-hand_Ca_insen,pfam_Spectrin_repeat,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACTN1	HGNC	ENSG00000072110	76	0	0	25	14	35	-	-	-	C	69343865	G	C	69343865	3	2	40	1	0	0	0	0	1	0	0	0	204	1074	38	3	232	3	ACTN1	14	69343865	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		69343865	38005675	47	2194										
MAPK6	0	genome.wustl.edu	37	chr15	52338804	52338804	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gacaaaagagtagccatcaaGaaaattgtccttactgatcc	7	9	1	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	15	52338804	52338804	G	C	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.147	p.K49N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	240	0	0	240	85	26.15	-	-	-	C	52338804	G	C	52338804	3	2	40	1	0	0	0	0	1	0	0	0	9352	933	33	2	149	2	MAPK6	15	52338804	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		52338804	50192588	48	2195										
MAN2C1	0	genome.wustl.edu	37	chr15	75653704	75653704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	acgggagccatccaggccctCccagaaaaatgtatggtgct	11	12	0	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	15	75653704	75653704	C	T	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413K	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	83	0	0	31	6	16.22	-	-	-	T	75653704	C	T	75653704	3	4	40	1	0	0	0	0	1	0	0	0	9289	864	30	2	1949	2	MAN2C1	15	75653704	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	23314900	75653704	26877688	49	2196										
WDR93	0	genome.wustl.edu	37	chr15	90278750	90278750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gcacctggataaaaccatctGtgccgtggccccagtcccag	10	15	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	15	90278750	90278750	G	A	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	missense	c.1574	p.C525Y	0.998	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	184	0	0	75	66	46.81	-	-	-	A	90278750	G	A	90278750	3	1	40	1	0	0	0	0	1	0	0	0	17437	1377	48	4	1624	4	WDR93	15	90278750	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	14625046	90278750	12252642	50	2197										
SEC14L5	0	genome.wustl.edu	37	chr16	5058578	5058578	+	Frame_Shift_Del	DEL	G	G	-													0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gcgggcagctgatcgacaaaGgctgggtcctgggcagggat							TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	16	5058578	5058578	G	-	DEL	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	frame_shift_del	c.1729	p.G577fs	0.061	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	77	0	0	20	9	31.03	-	-	-	-	5058578	G	-	5058578	7	5	40	1	0	1	0	1	0	0	0	0	14073	1000	35	0	1779	0	SEC14L5	16	5058578	Frame_Shift_Del	DEL	G	TCGA-A2-A0D2-01A-21W-A050-09		5058578	85296175	51	2198										
VWA3A	0	genome.wustl.edu	37	chr16	22128094	22128094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ccacagcccagatcagccttCtgaaatcctgtctgactaca	6	15	3	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	16	22128094	22128094	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.830	p.S277F	0.898	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	161	0	0	106	19	15.2	-	-	-	T	22128094	C	T	22128094	3	4	40	1	0	0	0	0	1	0	0	0	17337	913	32	2	868	2	VWA3A	16	22128094	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	17069516	22128094	68226659	52	2199										
PRKCB	0	genome.wustl.edu	37	chr16	24135278	24135278	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gattttaacttcctaatggtGctggggaaaggcagctttgg	13	6	0	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	16	24135278	24135278	G	C	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	silent	c.1041	p.V347	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	669	0	0	304	123	28.81	-	-	-	C	24135278	G	C	24135278	2	2	40	1	0	0	0	0	0	0	0	1	12589	1306	46	4		4	PRKCB	16	24135278	Silent	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	2007184	24135278	66219475	53	2200										
PRDM7	0	genome.wustl.edu	37	chr16	90124710	90124710	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	cttttattcaagagtttggaCctttctttgatctcttgacc	6	9	3	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	16	90124710	90124710	C	G	SNP	PRDM7	ENST00000449207	human	ensembl	69_37n	-1	known	missense	c.1466	p.G489A	0.201	NULL	pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_SET_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM7	HGNC	ENSG00000126856	232	0	0	322	74	18.69	-	-	-	G	90124710	C	G	90124710	3	3	40	1	0	0	0	0	1	0	0	0	12542	507	18	4	16	4	PRDM7	16	90124710	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	65989432	90124710	230043	54	2201										
ANKFY1	0	genome.wustl.edu	37	chr17	4120392	4120392	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	agatccagcgaagcattgtcAtcgtcacctcaggattagca	9	11	3	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	17	4120392	4120392	A	G	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.470	p.M157T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	86	0	0	49	22	30.99	-	-	-	G	4120392	A	G	4120392	3	3	40	1	0	0	0	0	1	0	0	0	626	217	8	5	3348	5	ANKFY1	17	4120392	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09		4120392	77074818	55	2202										
TANC2	0	genome.wustl.edu	37	chr17	61473132	61473132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tttggataagaacgggcagtGtgctttggttcatgctgcac	13	7	1	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	17	61473132	61473132	G	T	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.2858	p.C953F	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	273	0	0	130	70	35	-	-	-	T	61473132	G	T	61473132	3	4	40	1	0	0	0	0	1	0	0	0	15637	1377	48	4	2920	4	TANC2	17	61473132	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	57352740	61473132	19722078	56	2203										
TBCD	0	genome.wustl.edu	37	chr17	80765535	80765535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	cacggtcgtgcggtggtctgCagccaaggggtaggtgtctg	18	9	2	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	17	80765535	80765535	C	T	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.1139	p.A380V	1.000	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	114	0	0	27	30	52.63	-	-	-	T	80765535	C	T	80765535	3	4	40	1	0	0	0	0	1	0	0	0	15728	710	25	4	1181	4	TBCD	17	80765535	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	19292403	80765535	429675	57	2204										
FHOD3	0	genome.wustl.edu	37	chr18	34273180	34273180	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tttaactttcagatacaaatActtggaacagttggcagctg	8	7	1	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	18	34273180	34273180	A	G	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.1505	p.Y502C	1.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	217	1	0.46	128	86	40.19	-	-	-	G	34273180	A	G	34273180	3	3	40	1	0	0	0	0	1	0	0	0	5929	391	14	5	1559	5	FHOD3	18	34273180	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09		34273180	43804068	58	2205										
PLIN4	0	genome.wustl.edu	37	chr19	4508875	4508875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtgttcaaatgcccgctggcGgaagctgggacccaggtcac	14	12	2	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	4508875	4508875	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.3565	p.R1189C	0.997	pfam_Perilipin	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	30	0	0	3	5	62.5	-	-	-	A	4508875	G	A	4508875	3	1	40	1	0	0	0	0	1	0	0	0	12166	1116	39	1	520	1	PLIN4	19	4508875	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		4508875	54620108	59	2206										
MCOLN1	0	genome.wustl.edu	37	chr19	7598649	7598649	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgcttccttcctccagggacCcctcggaggagcattcgctg	11	15	0	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	7598649	7598649	C	G	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.1711	p.P571A	0.067	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	96	0	0	18	9	33.33	-	-	-	G	7598649	C	G	7598649	3	3	40	1	0	0	0	0	1	0	0	0	9466	623	22	4	1765	4	MCOLN1	19	7598649	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	3089774	7598649	51530334	60	2207										
FBN3	0	genome.wustl.edu	37	chr19	8140058	8140058	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tgctggcagcggtggggcccAtcacattcattcacatctga	11	12	4	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	8140058	8140058	A	G	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.7599	p.D2533	0.030	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	103	0	0	34	15	30.61	-	-	-	G	8140058	A	G	8140058	2	3	40	1	0	0	0	0	0	0	0	1	5750	214	8	5		5	FBN3	19	8140058	Silent	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	541409	8140058	50988925	61	2208										
USHBP1	0	genome.wustl.edu	37	chr19	17370427	17370427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ccggagttgctccatctgggCttccatgatgtgcatctcag	11	12	2	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	17370427	17370427	C	T	SNP	USHBP1	ENST00000252597	human	ensembl	69_37n	-1	known	missense	c.883	p.A295T	0.002	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	230	0	0	118	31	20.67	-	-	-	T	17370427	C	T	17370427	3	4	40	1	0	0	0	0	1	0	0	0	17134	797	28	4	1260	4	USHBP1	19	17370427	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	9230369	17370427	41758556	62	2209										
ANO8	0	genome.wustl.edu	37	chr19	17435805	17435806	+	In_Frame_Ins	INS	-	-	GCT													0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aaggcaggcaggcgggtgtcINSgctgcctgtgggtgactggg							TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	17435805	17435806	-	GCT	INS	ANO8	ENST00000159087	human	ensembl	69_37n	-1	known	in_frame_ins	c.3052_3051	p.1017in_frame_insS	0.998:0.200	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	31	0	0	7	3	30	-	-	-	GCT	17435806	-	GCT	17435805	7	5	40	1	0	1	1	0	0	0	0	0	702	884	31	0	654	0	ANO8	19	17435805	In_Frame_Ins	INS	-	TCGA-A2-A0D2-01A-21W-A050-09	65378	17435805	41693178	63	2210										
MLL4	0	genome.wustl.edu	37	chr19	36229228	36229228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tggatgactttgatgtagtgGacgccacgatgcatggcaat	13	7	0	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	36229228	36229228	G	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.7918	p.D2640Y	1.000	pirsf_MeTrfase_trithorax,pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	153	0	0	69	27	28.12	-	-	-	T	36229228	G	T	36229228	3	4	40	1	0	0	0	0	1	0	0	0	9694	1174	41	2	8064	2	MLL4	19	36229228	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	18793423	36229228	22899755	64	2211										
ARHGAP35	0	genome.wustl.edu	37	chr19	47422435	47422435	+	Frame_Shift_Del	DEL	G	G	-													0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	tcttggtattgatgttagcaGgggcatgaataggaactttg							TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	19	47422435	47422435	G	-	DEL	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	frame_shift_del	c.503	p.G169fs	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	128	0	0	91	34	27.2	-	-	-	-	47422435	G	-	47422435	7	5	40	1	0	1	0	1	0	0	0	0	6846	1000	35	0	505	0	ARHGAP35	19	47422435	Frame_Shift_Del	DEL	G	TCGA-A2-A0D2-01A-21W-A050-09	11193207	47422435	11706548	65	2212										
ANGPT4	0	genome.wustl.edu	37	chr20	865877	865877	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ggcggcgctctggcggctcaGcgtgttcagcagcttcgcct	15	14	3	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	20	865877	865877	G	C	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.679	p.L227V	0.995	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	58	0	0	8	6	42.86	-	-	-	C	865877	G	C	865877	3	2	40	1	0	0	0	0	1	0	0	0	612	962	34	4	856	4	ANGPT4	20	865877	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		865877	62159643	66	2213										
C20orf94	0	genome.wustl.edu	37	chr20	10603922	10603922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	agacatcttatgaaaaataaCccagggcaggcacagcaaac	8	10	1	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	20	10603922	10603922	C	T	SNP	C20orf94	ENST00000334534	human	ensembl	69_37n	1	known	silent	c.1122	p.N374	0.997	NULL	NULL	-	no_errors	C20orf94	HGNC	ENSG00000149346	118	0	0	89	21	18.92	-	-	-	T	10603922	C	T	10603922	2	4	40	1	0	0	0	0	0	0	0	1	2141	506	18	4		4	C20orf94	20	10603922	Silent	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	9738045	10603922	52421598	67	2214										
PREX1	0	genome.wustl.edu	37	chr20	47309216	47309216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gggggaggggctacctgtccCatcttccacattctccacct	10	15	2	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	20	47309216	47309216	C	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.1030	p.G344R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	351	0	0	145	55	27.5	-	-	-	T	47309216	C	T	47309216	3	4	40	1	0	0	0	0	1	0	0	0	12557	594	21	4	4081	4	PREX1	20	47309216	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	36705294	47309216	15716304	68	2215										
TH1L	0	genome.wustl.edu	37	chr20	57562859	57562859	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	caaagcagattctatttttaCtgaagaaggagaggtgagaa	11	4	1	5			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	20	57562859	57562859	C	A	SNP	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	missense	c.410	p.T137N	1.000	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	279	0	0	246	91	26.92	-	-	-	A	57562859	C	A	57562859	3	1	40	1	0	0	0	0	1	0	0	0	15934	565	20	4	424	4	TH1L	20	57562859	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	10253643	57562859	5462661	69	2216										
MOV10L1	0	genome.wustl.edu	37	chr22	50580592	50580592	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ggacctgccggtgctggcacCctttactgcagagatgagcg	14	12	0	2			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	22	50580592	50580592	C	G	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.2153	p.P718R	0.003	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	117	1	0.85	31	17	35.42	-	-	-	G	50580592	C	G	50580592	3	3	40	1	0	0	0	0	1	0	0	0	9791	623	22	4	2256	4	MOV10L1	22	50580592	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09		50580592	723974	70	2217										
RPGR	0	genome.wustl.edu	37	chrX	38160592	38160592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aagtcctaattttccgtggcGaccatctccaaaagtataca	6	11	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	38160592	38160592	G	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.967	p.R323C	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	125	0	0	96	25	20.66	-	-	-	A	38160592	G	A	38160592	3	1	40	1	0	0	0	0	1	0	0	0	13634	1058	37	1	3078	1	RPGR	23	38160592	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09		38160592	117109968	71	2218										
PAGE5	0	genome.wustl.edu	37	chrX	55248235	55248235	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gaggaaaaacgtcaagaagaGgaaccaccaactgataatca	9	8	2	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	55248235	55248235	G	C	SNP	PAGE5	ENST00000289619	human	ensembl	69_37n	1	known	missense	c.177	p.E59D	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE5	HGNC	ENSG00000158639	751	0	0	513	151	22.74	-	-	-	C	55248235	G	C	55248235	3	2	40	1	0	0	0	0	1	0	0	0	11466	991	35	4	187	4	PAGE5	23	55248235	Missense_Mutation	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	17087643	55248235	100022325	72	2219										
MTMR8	0	genome.wustl.edu	37	chrX	63548744	63548744	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aagtctggtttcctctgaacCaagaaaggccacacagaatg	9	10	2	3			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	63548744	63548744	C	A	SNP	MTMR8	ENST00000374852	human	ensembl	69_37n	-1	known	missense	c.1389	p.L463F	0.998	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043	500	0	0	562	160	22.16	-	-	-	A	63548744	C	A	63548744	3	1	40	1	0	0	0	0	1	0	0	0	10021	593	21	4	737	4	MTMR8	23	63548744	Missense_Mutation	SNP	C	TCGA-A2-A0D2-01A-21W-A050-09	8300509	63548744	91721816	73	2220										
AWAT1	0	genome.wustl.edu	37	chrX	69458163	69458163	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	gtgtgggtgaggccctgcaaAgtgtgcccaacaccaccacc	12	14	0	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	69458163	69458163	A	T	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	1	known	missense	c.562	p.S188C	0.996	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	411	0	0	183	56	23.24	-	-	-	T	69458163	A	T	69458163	3	4	40	1	0	0	0	0	1	0	0	0	1238	72	3	5	580	5	AWAT1	23	69458163	Missense_Mutation	SNP	A	TCGA-A2-A0D2-01A-21W-A050-09	5909419	69458163	85812397	74	2221										
LAMP2	0	genome.wustl.edu	37	chrX	119562414	119562414	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	aagacaacaattataaggaaGcccaaggccacacccactgc	7	13	0	1			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	119562414	119562414	G	C	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	silent	c.1161	p.G387	1.000	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	189	0	0	239	65	21.38	-	-	-	C	119562414	G	C	119562414	2	2	40	1	0	0	0	0	0	0	0	1	8672	958	34	4		4	LAMP2	23	119562414	Silent	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	50104251	119562414	35708146	75	2222										
PDZD4	0	genome.wustl.edu	37	chrX	153068871	153068871	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.56723969848664	1.29289071680376	1.92736486486486	0.600737100737101	0.0697785186949274	0.478262995745514	0	ccatcggcggagcgcgcgccGtgggccagcatctcctggat	15	15	1	0			TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05656575-69e7-4745-a89d-ca0568eb5559	c830c663-95f6-40e0-9fd6-16586fa7d344	X	153068871	153068871	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	silent	c.2247	p.H749	0.422	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	19	0	0	8	5	38.46	-	-	-	A	153068871	G	A	153068871	2	1	40	1	0	0	0	0	0	0	0	1	11776	1136	40	1		1	PDZD4	23	153068871	Silent	SNP	G	TCGA-A2-A0D2-01A-21W-A050-09	33506457	153068871	2201689	76	2223										
PTPRU	0	genome.wustl.edu	37	chr1	29651722	29651722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	gaaacgggggaggacgcagcGgcaccttctgcgcctgcgcc	16	14	1	0			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	29651722	29651722	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.4162	p.G1388S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	49	0	0	52	35	40.23	-	-	-	A	29651722	G	A	29651722	3	1	41	1	0	0	0	0	1	0	0	0	12896	1116	39	1	4302	1	PTPRU	1	29651722	Missense_Mutation	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09		29651722	219598899	1	2224										
EVI5	0	genome.wustl.edu	37	chr1	93163492	93163492	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ttaaaaagttcacgaagtctAtaatcttgcattaatttaac	4	6	3	0			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	93163492	93163492	A	G	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	silent	c.822	p.Y274	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	192	0	0	124	65	34.39	-	-	-	G	93163492	A	G	93163492	2	3	41	1	0	0	0	0	0	0	0	1	5326	456	16	5		5	EVI5	1	93163492	Silent	SNP	A	TCGA-A2-A0D3-01A-11D-A10Y-09	63511770	93163492	156087129	2	2225										
NOTCH2	0	genome.wustl.edu	37	chr1	120458202	120458202	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	gaagggggtgtggggtacttGcccacagaggctgggaaagg	20	6	0	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	120458202	120458202	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	silent	c.7143	p.G2381	0.943	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	84	0	0	89	58	39.46	-	-	-	A	120458202	G	A	120458202	2	1	41	1	0	0	0	0	0	0	0	1	10620	1306	46	4		4	NOTCH2	1	120458202	Silent	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09	27294710	120458202	128792419	3	2226										
DUSP27	0	genome.wustl.edu	37	chr1	167097767	167097767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	gaggaagaggaagaaatggaCgatgaagccatcattgctgc	14	6	1	3			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	167097767	167097767	C	T	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	silent	c.3399	p.D1133	0.253	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	36	0	0	77	13	14.44	-	-	-	T	167097767	C	T	167097767	2	4	41	1	0	0	0	0	0	0	0	1	4859	535	19	1		1	DUSP27	1	167097767	Silent	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09	46639565	167097767	82152854	4	2227										
C1orf129	0	genome.wustl.edu	37	chr1	170955837	170955837	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ttactctggaatttcatgccGagaaggtcaccatggtaaga	10	8	3	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	170955837	170955837	G	T	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	nonsense	c.865	p.E289*	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	102	0	0	329	71	17.71	-	-	-	T	170955837	G	T	170955837	4	4	41	1	0	0	0	0	0	1	0	0	2015	1059	37	3	899	3	C1orf129	1	170955837	Nonsense_Mutation	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09	3858070	170955837	78294784	5	2228										
CEP350	0	genome.wustl.edu	37	chr1	180047624	180047624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	caagtgaagaggaatctccaGtacctctgtactctcatcta	7	11	4	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	180047624	180047624	G	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.5794	p.V1932L	0.175	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	160	0	0	144	94	39.5	-	-	-	T	180047624	G	T	180047624	3	4	41	1	0	0	0	0	1	0	0	0	3283	1029	36	4	5904	4	CEP350	1	180047624	Missense_Mutation	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09	9091787	180047624	69202997	6	2229										
NLRP3	0	genome.wustl.edu	37	chr1	247588840	247588840	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	aggaggaggaaaaggaaggcCgacaccttgatatggtgcag	16	6	0	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	1	247588840	247588840	C	T	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	nonsense	c.2095	p.R699*	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	180	0	0	428	78	15.38	-	-	-	T	247588840	C	T	247588840	4	4	41	1	0	0	0	0	0	1	0	0	10550	644	23	1	2105	1	NLRP3	1	247588840	Nonsense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09	67541216	247588840	1661781	7	2230										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	129	0	0	65	58	47.15	-	-	-	G	178952085	A	G	178952085	3	3	41	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0D3-01A-11D-A10Y-09		178952085	19070345	8	2231										
GRIA2	0	genome.wustl.edu	37	chr4	158262491	158262491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	atctcctcctacacggctaaCttagctgccttcctgactgt	6	15	1	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	4	158262491	158262491	C	T	SNP	GRIA2	ENST00000264426	human	ensembl	69_37n	1	known	silent	c.1920	p.N640	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	187	0	0	152	89	36.93	-	-	-	T	158262491	C	T	158262491	2	4	41	1	0	0	0	0	0	0	0	1	6819	564	20	4		4	GRIA2	4	158262491	Silent	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		158262491	32891785	9	2232										
IL17B	0	genome.wustl.edu	37	chr5	148756510	148756510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	aggggccaggggcccaggccGcccttgccccttcctcttgc	13	18	1	0			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	5	148756510	148756510	G	A	SNP	IL17B	ENST00000261796	human	ensembl	69_37n	-1	known	missense	c.100	p.R34W	0.011	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17B	HGNC	ENSG00000127743	41	0	0	32	16	33.33	-	-	-	A	148756510	G	A	148756510	3	1	41	1	0	0	0	0	1	0	0	0	7689	1086	38	1	450	1	IL17B	5	148756510	Missense_Mutation	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09		148756510	32158750	10	2233										
BAI3	0	genome.wustl.edu	37	chr6	70070787	70070787	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ataaggatattggtccttgcCgagcagccacaataacagga	10	9	0	0			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	6	70070787	70070787	C	T	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	nonsense	c.3622	p.R1208*	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	109	0	0	64	46	41.82	-	-	-	T	70070787	C	T	70070787	4	4	41	1	0	0	0	0	0	1	0	0	1304	644	23	1	3728	1	BAI3	6	70070787	Nonsense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		70070787	101044280	11	2234										
PEG10	0	genome.wustl.edu	37	chr7	94293642	94293643	+	Frame_Shift_Ins	INS	-	-	T													0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	cgccaccccgggcgctggtgINSttgcctcacattgcaagcca							TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	7	94293642	94293643	-	T	INS	PEG10	ENST00000482108	human	ensembl	69_37n	1	known	frame_shift_ins	c.774_775	p.L258fs	0.002:0.000	NULL	pfam_Retrotrans_gag,superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PEG10	HGNC	ENSG00000242265	8	0	0	14	7	33.33	-	-	-	T	94293643	-	T	94293642	7	5	41	1	0	1	1	0	0	0	0	0	11792	1377	48	0	1008	0	PEG10	7	94293642	Frame_Shift_Ins	INS	-	TCGA-A2-A0D3-01A-11D-A10Y-09		94293642	64845021	12	2235										
DNAJC2	0	genome.wustl.edu	37	chr7	102960101	102960102	+	Frame_Shift_Del	DEL	GA	GA	-													0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	acttcttttgtgcatgatgtGagtgtttcattcaagcactg							TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	7	102960101	102960102	GA	-	DEL	DNAJC2	ENST00000379263	human	ensembl	69_37n	-1	known	frame_shift_del	c.1197_1196	p.L399fs	0.979:1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N	-	no_errors	DNAJC2	HGNC	ENSG00000105821	223	0	0	153	68	30.77	-	-	-	-	102960102	GA	-	102960101	7	5	41	1	0	1	0	1	0	0	0	0	4674	1277	45	0	692	0	DNAJC2	7	102960101	Frame_Shift_Del	DEL	GA	TCGA-A2-A0D3-01A-11D-A10Y-09	8666459	102960101	56178562	13	2236										
SLC13A1	0	genome.wustl.edu	37	chr7	122768936	122768936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ccaaccaggaacaaatccggGgtctcgactaaaccatagca	8	13	1	0			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	7	122768936	122768936	G	A	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.1096	p.P366S	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	106	0	0	68	42	37.84	-	-	-	A	122768936	G	A	122768936	3	1	41	1	0	0	0	0	1	0	0	0	14480	1232	43	4	715	4	SLC13A1	7	122768936	Missense_Mutation	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09	19808835	122768936	36369727	14	2237										
MLL3	0	genome.wustl.edu	37	chr7	152012381	152012381	+	Frame_Shift_Del	DEL	G	G	-													0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	tttaagtctccttgtcctaaGgaacttttttccccacagta							TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	7	152012381	152012381	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.432	p.L145fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	243	0	0	189	75	27.78	-	-	-	-	152012381	G	-	152012381	7	5	41	1	0	1	0	1	0	0	0	0	9693	987	35	0	14527	0	MLL3	7	152012381	Frame_Shift_Del	DEL	G	TCGA-A2-A0D3-01A-11D-A10Y-09	29243445	152012381	7126282	15	2238										
SLC18A1	0	genome.wustl.edu	37	chr8	20005189	20005189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	caccgaggtgtggcgtagatCcaccaggtgccccatgatgg	14	12	0	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	8	20005189	20005189	C	A	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	missense	c.1255	p.D419Y	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	71	0	0	139	33	19.19	-	-	-	A	20005189	C	A	20005189	3	1	41	1	0	0	0	0	1	0	0	0	14514	855	30	2	334	2	SLC18A1	8	20005189	Missense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		20005189	126358833	16	2239										
SYBU	0	genome.wustl.edu	37	chr8	110588052	110588052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ttggatgtttatgtccacaaAatatttctgaatgcctttat	6	6	1	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	8	110588052	110588052	A	C	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.1075	p.F359V	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	68	0	0	42	64	60.38	-	-	-	C	110588052	A	C	110588052	3	2	41	1	0	0	0	0	1	0	0	0	15518	14	1	5	920	5	SYBU	8	110588052	Missense_Mutation	SNP	A	TCGA-A2-A0D3-01A-11D-A10Y-09	90582863	110588052	35775970	17	2240										
GATA3	0	genome.wustl.edu	37	chr10	8111543	8111544	+	Frame_Shift_Ins	INS	-	-	T													0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	tctgcaatgcctgtgggctcINStactacaagcttcacaatgt							TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	10	8111543	8111544	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1032_1033	p.Y344fs	0.358:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	118	0	0	91	32	26.02	-	-	-	T	8111544	-	T	8111543	7	5	41	1	0	1	1	0	0	0	0	0	6305	900	32	0	1046	0	GATA3	10	8111543	Frame_Shift_Ins	INS	-	TCGA-A2-A0D3-01A-11D-A10Y-09		8111543	127423204	18	2241										
GPHA2	0	genome.wustl.edu	37	chr11	64702634	64702634	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ccttggcggtcacttcgcacTgtcacattgaaggctagaag	11	11	2	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	11	64702634	64702634	T	A	SNP	GPHA2	ENST00000279168	human	ensembl	69_37n	-1	known	silent	c.117	p.T39	0.103	pfam_DAN,pfscan_Cys_knot_C,pfscan_Glyco_hormone	pfam_DAN,pfscan_Cys_knot_C,pfscan_Glyco_hormone	-	no_errors	GPHA2	HGNC	ENSG00000149735	22	0	0	21	19	46.34	-	-	-	A	64702634	T	A	64702634	2	1	41	1	0	0	0	0	0	0	0	1	6658	1567	55	5		5	GPHA2	11	64702634	Silent	SNP	T	TCGA-A2-A0D3-01A-11D-A10Y-09		64702634	70303882	19	2242										
PKNOX2	0	genome.wustl.edu	37	chr11	125301239	125301239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ggaggtcgacgagctgcagaCgacaaatgtcagcgacctgg	15	10	1	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	11	125301239	125301239	C	T	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	1	known	missense	c.1370	p.T457M	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	29	0	0	51	34	40	-	-	-	T	125301239	C	T	125301239	3	4	41	1	0	0	0	0	1	0	0	0	12057	536	19	1	1408	1	PKNOX2	11	125301239	Missense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09	60598605	125301239	9705277	20	2243										
C11orf45	0	genome.wustl.edu	37	chr11	128772497	128772497	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	tgatgggcactgagggggtaGcccaggcggccctctctact	15	12	1	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	11	128772497	128772497	G	T	SNP	C11orf45	ENST00000310799	human	ensembl	69_37n	-1	known	silent	c.393	p.G131	0.000	NULL	NULL	-	no_errors	C11orf45	HGNC	ENSG00000174370	61	0	0	62	20	24.39	-	-	-	T	128772497	G	T	128772497	2	4	41	1	0	0	0	0	0	0	0	1	1653	958	34	4		4	C11orf45	11	128772497	Silent	SNP	G	TCGA-A2-A0D3-01A-11D-A10Y-09	3471258	128772497	6234019	21	2244										
ADAMTS15	0	genome.wustl.edu	37	chr11	130318913	130318913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ctggctttcgccgggcgaacCgctggaggctctgagccaga	15	13	1	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	11	130318913	130318913	C	T	SNP	ADAMTS15	ENST00000299164	human	ensembl	69_37n	1	known	silent	c.45	p.T15	0.251	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	35	0	0	27	11	28.95	-	-	-	T	130318913	C	T	130318913	2	4	41	1	0	0	0	0	0	0	0	1	260	639	23	1		1	ADAMTS15	11	130318913	Silent	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09	1546416	130318913	4687603	22	2245										
POLI	0	genome.wustl.edu	37	chr18	51820754	51820754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	acattgatcctcaagttttcTatgaactaccagaagcagta	6	9	2	3			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	18	51820754	51820754	T	G	SNP	POLI	ENST00000579534	human	ensembl	69_37n	1	known	missense	c.2140	p.Y714D	1.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751	46	0	0	33	25	43.1	-	-	-	G	51820754	T	G	51820754	3	3	41	1	0	0	0	0	1	0	0	0	12277	1522	53	5	2178	5	POLI	18	51820754	Missense_Mutation	SNP	T	TCGA-A2-A0D3-01A-11D-A10Y-09		51820754	26256494	23	2246										
MYH14	0	genome.wustl.edu	37	chr19	50810349	50810349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	tggtgcgcagagctgagaagCggcttaaagaggtggtgctc	17	7	0	3			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	19	50810349	50810349	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.5722	p.R1908W	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	109	0	0	112	67	37.43	-	-	-	T	50810349	C	T	50810349	3	4	41	1	0	0	0	0	1	0	0	0	10105	759	27	1	5880	1	MYH14	19	50810349	Missense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		50810349	8318634	24	2247										
TFIP11	0	genome.wustl.edu	37	chr22	26895384	26895384	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	ctcatactgtagctgccggtCattctggatgatctcctgct	9	12	4	1			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	22	26895384	26895384	C	T	SNP	TFIP11	ENST00000405938	human	ensembl	69_37n	-1	known	missense	c.1015	p.D339N	0.996	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109	48	0	0	69	29	29.59	-	-	-	T	26895384	C	T	26895384	3	4	41	1	0	0	0	0	1	0	0	0	15902	826	29	2	1526	2	TFIP11	22	26895384	Missense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		26895384	24409182	25	2248										
MAGEC3	0	genome.wustl.edu	37	chrX	140985038	140985038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.64344262295082	NA	0.64344262295082	1	1	0	gactattttcccatgatcttCgggaaagcccatgagttcat	8	10	2	2			TCGA-A2-A0D3-01A-11D-A10Y-09	TCGA-A2-A0D3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8183420e-7f44-4024-b3db-6b53ad293988	e23f0ac2-c466-4431-a23a-94bf6a1f5db6	X	140985038	140985038	C	A	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.1494	p.F498L	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	167	0	0	150	21	12.28	-	-	-	A	140985038	C	A	140985038	3	1	41	1	0	0	0	0	1	0	0	0	9253	883	31	3	1749	3	MAGEC3	23	140985038	Missense_Mutation	SNP	C	TCGA-A2-A0D3-01A-11D-A10Y-09		140985038	14285522	26	2249										
MACF1	0	genome.wustl.edu	37	chr1	39889705	39889705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ttctctttataatagttgctCcagcggctcctagatgatcg	8	10	1	2			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	1	39889705	39889705	C	G	SNP	MACF1	ENST00000372925	human	ensembl	69_37n	1	novel	missense	c.7306	p.P2436A	0.997	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MACF1	HGNC	ENSG00000127603	234	0	0	238	45	15.9	-	-	-	G	39889705	C	G	39889705	3	3	42	1	0	0	0	0	1	0	0	0	9211	842	30	2	16342	2	MACF1	1	39889705	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09		39889705	209360916	1	2250										
CD1C	0	genome.wustl.edu	37	chr1	158261173	158261173	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ggagattcaagaccatgcaaGtcaagattactcgaaatgta	9	7	2	3			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	1	158261173	158261173	G	T	SNP	CD1C	ENST00000368170	human	ensembl	69_37n	1	known	missense	c.311	p.S104I	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1C	HGNC	ENSG00000158481	335	0	0	337	83	19.76	-	-	-	T	158261173	G	T	158261173	3	4	42	1	0	0	0	0	1	0	0	0	3005	1029	36	4	317	4	CD1C	1	158261173	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09	118371468	158261173	90989448	2	2251										
KIF3C	0	genome.wustl.edu	37	chr2	26204266	26204266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	agaggtccttgatgtagacgCcagtctcggggttctctttc	12	10	2	3			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	2	26204266	26204266	C	T	SNP	KIF3C	ENST00000264712	human	ensembl	69_37n	-1	known	missense	c.521	p.G174D	0.998	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731	145	0	0	81	29	26.36	-	-	-	T	26204266	C	T	26204266	3	4	42	1	0	0	0	0	1	0	0	0	8354	739	26	4	1892	4	KIF3C	2	26204266	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09		26204266	216995107	3	2252										
SLC4A10	0	genome.wustl.edu	37	chr2	162711543	162711543	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	tggagcaagccttatgtggcTactctttcattgcacagctt	9	10	2	0			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	2	162711543	162711543	T	G	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	silent	c.480	p.A160	0.955	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	114	0	0	133	30	18.4	-	-	-	G	162711543	T	G	162711543	2	3	42	1	0	0	0	0	0	0	0	1	14740	1509	53	5		5	SLC4A10	2	162711543	Silent	SNP	T	TCGA-A2-A0D4-01A-11W-A019-09	136507277	162711543	80487830	4	2253										
NBEAL1	0	genome.wustl.edu	37	chr2	204001452	204001452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ttcagcactaagtaaaccagGaatatccagtgaactacttc	6	10	1	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	2	204001452	204001452	G	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.4433	p.G1478V	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	76	0	0	89	15	14.42	-	-	-	T	204001452	G	T	204001452	3	4	42	1	0	0	0	0	1	0	0	0	10260	1174	41	2	4539	2	NBEAL1	2	204001452	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09	41289909	204001452	39197921	5	2254										
TMEM40	0	genome.wustl.edu	37	chr3	12785428	12785429	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gttcccgtgggggtatccagINScccccaggctccgtcgatgt							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	3	12785428	12785429	-	C	INS	TMEM40	ENST00000431022	human	ensembl	69_37n	-1	known	frame_shift_ins	c.320_319	p.A107fs	0.001:0.002	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726	22	0	0	13	2	13.33	-	-	-	C	12785429	-	C	12785428	7	5	42	1	0	1	1	0	0	0	0	0	16258	971	34	0	465	0	TMEM40	3	12785428	Frame_Shift_Ins	INS	-	TCGA-A2-A0D4-01A-11W-A019-09		12785428	185237002	6	2255										
XIRP1	0	genome.wustl.edu	37	chr3	39226658	39226659	+	Frame_Shift_Ins	INS	-	-	G													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	tggttgagggcattgagcttINSggggggctcagagctctggg							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	3	39226658	39226659	-	G	INS	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4279_4278	p.K1426fs	0.245:0.254	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	41	0	0	22	3	12	-	-	-	G	39226659	-	G	39226658	7	5	42	1	0	1	1	0	0	0	0	0	17526	1821	63	0	1256	0	XIRP1	3	39226658	Frame_Shift_Ins	INS	-	TCGA-A2-A0D4-01A-11W-A019-09	26441230	39226658	158795772	7	2256										
IQCB1	0	genome.wustl.edu	37	chr3	121508941	121508941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	tggatgaactatttcgagcaTactcagctgcaattctcggg	10	9	2	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	3	121508941	121508941	T	C	SNP	IQCB1	ENST00000310864	human	ensembl	69_37n	-1	known	missense	c.1108	p.M370V	0.936	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	215	0	0	331	54	13.99	-	-	-	C	121508941	T	C	121508941	3	2	42	1	0	0	0	0	1	0	0	0	7857	1406	49	5	708	5	IQCB1	3	121508941	Missense_Mutation	SNP	T	TCGA-A2-A0D4-01A-11W-A019-09	82282283	121508941	76513489	8	2257										
CHST2	0	genome.wustl.edu	37	chr3	142841031	142841031	+	Frame_Shift_Del	DEL	T	T	-													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ggagcagtttgccctgaacaTgaccagtggctcgggctcct							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	3	142841031	142841031	T	-	DEL	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	frame_shift_del	c.1373	p.M458fs	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	25	0	0	16	42	71.19	-	-	-	-	142841031	T	-	142841031	7	5	42	1	0	1	0	1	0	0	0	0	3433	1464	51	0	1375	0	CHST2	3	142841031	Frame_Shift_Del	DEL	T	TCGA-A2-A0D4-01A-11W-A019-09	21332090	142841031	55181399	9	2258										
PCDHA5	0	genome.wustl.edu	37	chr5	140202883	140202883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	cccgctgtcgagttacgtttCggtgcacgcggagagcggca	15	12	0	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	5	140202883	140202883	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.1523	p.S508L	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	25	0	0	16	4	20	-	-	-	T	140202883	C	T	140202883	3	4	42	1	0	0	0	0	1	0	0	0	11600	893	31	1	1525	1	PCDHA5	5	140202883	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09		140202883	40712377	10	2259										
MED23	0	genome.wustl.edu	37	chr6	131926396	131926396	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	atacctcattttggcatgaaCtgtcagtgaatccaggaggt	10	8	2	2			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	6	131926396	131926396	C	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1615	p.V539F	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	58	0	0	35	48	57.83	-	-	-	A	131926396	C	A	131926396	3	1	42	1	0	0	0	0	1	0	0	0	9512	565	20	4	2580	4	MED23	6	131926396	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09		131926396	39188671	11	2260										
MUC17	0	genome.wustl.edu	37	chr7	100676653	100676653	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gctagcaccctttcaacaacTcctgttgactccaacactcc	4	17	1	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	7	100676653	100676653	T	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.1956	p.T652	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	656	1	0.15	251	177	41.07	-	-	-	A	100676653	T	A	100676653	2	1	42	1	0	0	0	0	0	0	0	1	10046	1538	54	5		5	MUC17	7	100676653	Silent	SNP	T	TCGA-A2-A0D4-01A-11W-A019-09		100676653	58462010	12	2261										
CPA1	0	genome.wustl.edu	37	chr7	130027699	130027699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	agcactattgactggacctaCagccagggcatcaagtactc	9	12	1	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	7	130027699	130027699	C	T	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	silent	c.1107	p.Y369	0.061	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	418	0	0	216	183	45.75	-	-	-	T	130027699	C	T	130027699	2	4	42	1	0	0	0	0	0	0	0	1	3819	489	17	4		4	CPA1	7	130027699	Silent	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09	29351046	130027699	29110964	13	2262										
FGD3	0	genome.wustl.edu	37	chr9	95738899	95738900	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	cagccaggtcccgaaggtcaINSccccccaggaggaggcggac							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	9	95738899	95738900	-	C	INS	FGD3	ENST00000337352	human	ensembl	69_37n	1	known	frame_shift_ins	c.361_362	p.Q123fs	0.000:0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084	9	0	0	11	2	15.38	-	-	-	C	95738900	-	C	95738899	7	5	42	1	0	1	1	0	0	0	0	0	5880	159	6	0	363	0	FGD3	9	95738899	Frame_Shift_Ins	INS	-	TCGA-A2-A0D4-01A-11W-A019-09		95738899	45474532	14	2263										
DNHD1	0	genome.wustl.edu	37	chr11	6592127	6592127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	tctgctgacccacgtgattcGccaagacgagtccgacgccc	10	16	1	3			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	11	6592127	6592127	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.13385	p.R4462H	0.000	pfam_Dynein_heavy	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	44	0	0	24	13	35.14	-	-	-	A	6592127	G	A	6592127	3	1	42	1	0	0	0	0	1	0	0	0	4703	1087	38	1	13552	1	DNHD1	11	6592127	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09		6592127	128414389	15	2264										
EHBP1L1	0	genome.wustl.edu	37	chr11	65349718	65349718	+	Frame_Shift_Del	DEL	G	G	-													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gaggggacaggcctggagcaGggcccttctgttggagcaat							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	11	65349718	65349718	G	-	DEL	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	frame_shift_del	c.1575	p.G526fs	0.999	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	9	0	0	4	2	33.33	-	-	-	-	65349718	G	-	65349718	7	5	42	1	0	1	0	1	0	0	0	0	5011	991	35	0	1609	0	EHBP1L1	11	65349718	Frame_Shift_Del	DEL	G	TCGA-A2-A0D4-01A-11W-A019-09	58757591	65349718	69656798	16	2265										
FAM90A1	0	genome.wustl.edu	37	chr12	8376712	8376712	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gttttccttcccttccttttCcccaaagttcggtggaacca	6	14	0	0			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	12	8376712	8376712	C	A	SNP	FAM90A1	ENST00000307435	human	ensembl	69_37n	-1	known	nonsense	c.223	p.E75*	0.000	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847	56	0	0	39	9	18.75	-	-	-	A	8376712	C	A	8376712	4	1	42	1	0	0	0	0	0	1	0	0	5694	864	30	2	1183	2	FAM90A1	12	8376712	Nonsense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09		8376712	125475183	17	2266										
N4BP2L2	0	genome.wustl.edu	37	chr13	33017767	33017767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ggtgtctaatgctatggtatGcctatttctaatatgctttt	8	6	2	0			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	13	33017767	33017767	G	A	SNP	N4BP2L2	ENST00000399396	human	ensembl	69_37n	-1	known	missense	c.907	p.H303Y	0.000	NULL	NULL	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	60	0	0	31	13	29.55	-	-	-	A	33017767	G	A	33017767	3	1	42	1	0	0	0	0	1	0	0	0	10184	1319	46	4	1363	4	N4BP2L2	13	33017767	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09		33017767	82152111	18	2267										
TEP1	0	genome.wustl.edu	37	chr14	20876336	20876336	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gtggtttctccatggtcttcAggtcagaaagtgtggccagg	14	8	4	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	14	20876336	20876336	A	T	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.263	p.L88Q	0.810	pfam_TEP1_N	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	371	0	0	105	160	60.38	-	-	-	T	20876336	A	T	20876336	3	4	42	1	0	0	0	0	1	0	0	0	15854	188	7	5	7836	5	TEP1	14	20876336	Missense_Mutation	SNP	A	TCGA-A2-A0D4-01A-11W-A019-09		20876336	86473204	19	2268										
KTN1	0	genome.wustl.edu	37	chr14	56114770	56114770	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gaaaaagatgagaagttaaaGactgtggaagaattacttga	11	2	0	5			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	14	56114770	56114770	G	A	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	silent	c.2235	p.K745	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	75	0	0	56	17	23.29	-	-	-	A	56114770	G	A	56114770	2	1	42	1	0	0	0	0	0	0	0	1	8639	933	33	2		2	KTN1	14	56114770	Silent	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09	35238434	56114770	51234770	20	2269										
KIAA0586	0	genome.wustl.edu	37	chr14	58941356	58941356	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	atgtgatgaaattccagactCtgaaccaattctggagttta	8	7	2	4			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	14	58941356	58941356	C	G	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	missense	c.2621	p.S874C	0.998	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	120	0	0	68	23	25.27	-	-	-	G	58941356	C	G	58941356	3	3	42	1	0	0	0	0	1	0	0	0	8238	913	32	2	2508	2	KIAA0586	14	58941356	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09	2826586	58941356	48408184	21	2270										
SLC24A4	0	genome.wustl.edu	37	chr14	92958577	92958577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	cctgttgctgggctctgtcgCtctcaccgtgagtctttaca	10	13	3	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	14	92958577	92958577	C	T	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.1709	p.A570V	0.834	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	88	0	0	29	24	45.28	-	-	-	T	92958577	C	T	92958577	3	4	42	1	0	0	0	0	1	0	0	0	14557	797	28	4	1720	4	SLC24A4	14	92958577	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09	34017221	92958577	14390963	22	2271										
IQCH	0	genome.wustl.edu	37	chr15	67782366	67782366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gcaaggaactgtttttatatTatatgagcacctgaagagac	9	6	0	3			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	15	67782366	67782366	T	C	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	1	known	missense	c.2825	p.L942S	0.019	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	207	0	0	60	242	79.87	-	-	-	C	67782366	T	C	67782366	3	2	42	1	0	0	0	0	1	0	0	0	7865	1764	61	5	3027	5	IQCH	15	67782366	Missense_Mutation	SNP	T	TCGA-A2-A0D4-01A-11W-A019-09		67782366	34749026	23	2272										
SPTBN4	0	genome.wustl.edu	37	chr19	41038673	41038673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	aggagtggctggagaagatcGagcgggtgaggaagctgatg	20	4	0	4			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	19	41038673	41038673	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.4090	p.E1364K	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	46	0	0	42	7	14.29	-	-	-	A	41038673	G	A	41038673	3	1	42	1	0	0	0	0	1	0	0	0	15212	1059	37	1	4160	1	SPTBN4	19	41038673	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09		41038673	18090310	24	2273										
GYG2	0	genome.wustl.edu	37	chrX	2779579	2779580	+	Frame_Shift_Ins	INS	-	-	G													0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	cagctttgccacagtgatgtINSgggggggccgtgtgcggatt							TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	X	2779579	2779580	-	G	INS	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	frame_shift_ins	c.947_948	p.P319fs	0.000:0.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	23	0	0	17	3	15	-	-	-	G	2779580	-	G	2779579	7	5	42	1	0	1	1	0	0	0	0	0	6957	1696	59	0	977	0	GYG2	23	2779579	Frame_Shift_Ins	INS	-	TCGA-A2-A0D4-01A-11W-A019-09		2779579	152490981	25	2274										
ALAS2	0	genome.wustl.edu	37	chrX	55039950	55039950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	tccatcatctgagggctgtgGtggggggagggtgccaagcg	19	8	2	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	X	55039950	55039950	G	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.1569	p.H523Q	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	38	0	0	61	16	20.78	-	-	-	T	55039950	G	T	55039950	3	4	42	1	0	0	0	0	1	0	0	0	485	1252	44	4	202	4	ALAS2	23	55039950	Missense_Mutation	SNP	G	TCGA-A2-A0D4-01A-11W-A019-09	52260371	55039950	100230610	26	2275										
ZCCHC5	0	genome.wustl.edu	37	chrX	77912638	77912638	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	cttcactgatgtgtgggcagTtgattgcagcctgcataggt	13	8	1	2			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	X	77912638	77912638	T	A	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	missense	c.1280	p.N427I	0.000	superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	105	0	0	108	14	11.48	-	-	-	A	77912638	T	A	77912638	3	1	42	1	0	0	0	0	1	0	0	0	17687	1725	60	5	151	5	ZCCHC5	23	77912638	Missense_Mutation	SNP	T	TCGA-A2-A0D4-01A-11W-A019-09	22872688	77912638	77357922	27	2276										
PABPC5	0	genome.wustl.edu	37	chrX	90690698	90690698	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	ctataagaagttcaggcctgCtggccctctgcgattcaccc	9	14	3	1			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	X	90690698	90690698	C	A	SNP	PABPC5	ENST00000312600	human	ensembl	69_37n	1	known	missense	c.122	p.A41D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740	37	0	0	47	11	18.97	-	-	-	A	90690698	C	A	90690698	3	1	42	1	0	0	0	0	1	0	0	0	11440	797	28	4	124	4	PABPC5	23	90690698	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09	12778060	90690698	64579862	28	2277										
GUCY2F	0	genome.wustl.edu	37	chrX	108718511	108718511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.86940364720629	1.14004914004914	3.13513513513514	0.696696696696697	1	1	0	gtcttgtcctgtggtcaggaCgacccctacaggtaagccgt	12	12	2	0			TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3accede-1716-4d44-bad4-5427a9ebd675	9223d8eb-db2b-469a-94fc-857f5b62996c	X	108718511	108718511	C	T	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.655	p.V219I	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	164	0	0	90	72	44.44	-	-	-	T	108718511	C	T	108718511	3	4	42	1	0	0	0	0	1	0	0	0	6949	536	19	1	2743	1	GUCY2F	23	108718511	Missense_Mutation	SNP	C	TCGA-A2-A0D4-01A-11W-A019-09	18027813	108718511	46552049	29	2278										
NOS1AP	0	genome.wustl.edu	37	chr1	162337159	162337159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ccaacacggacgagagcgagGagcgcgactcgtggtcccag	15	13	0	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	1	162337159	162337159	G	A	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	missense	c.1423	p.E475K	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	21	0	0	24	5	17.24	-	-	-	A	162337159	G	A	162337159	3	1	43	1	0	0	0	0	1	0	0	0	10614	1175	41	2	1515	2	NOS1AP	1	162337159	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09		162337159	86913462	1	2279										
SMYD3	0	genome.wustl.edu	37	chr1	245912935	245912935	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	cttcaatcaggctgtgttctCtgccatgtgtcactctcata	7	12	5	0			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	1	245912935	245912935	C	T	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	missense	c.1217	p.R406K	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	90	0	0	463	82	15.05	-	-	-	T	245912935	C	T	245912935	3	4	43	1	0	0	0	0	1	0	0	0	14912	913	32	2	73	2	SMYD3	1	245912935	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09	83575776	245912935	3337686	2	2280										
XIRP2	0	genome.wustl.edu	37	chr2	168115850	168115850	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	aagagcagattaaaagaaacAggtgctacagtgacactgag	11	6	0	5			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	2	168115850	168115850	A	T	SNP	XIRP2	ENST00000420519	human	ensembl	69_37n	1	known	missense	c.2893	p.R965W	0.989	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092	38	0	0	44	38	46.34	-	-	-	T	168115850	A	T	168115850	3	4	43	1	0	0	0	0	1	0	0	0	17527	179	7	5	12211	5	XIRP2	2	168115850	Missense_Mutation	SNP	A	TCGA-A2-A0EM-01A-11W-A050-09		168115850	75083523	3	2281										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0	104	63	37.72	-	-	-	T	178952085	A	T	178952085	3	4	43	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0EM-01A-11W-A050-09		178952085	19070345	4	2282										
GALNT10	0	genome.wustl.edu	37	chr5	153760044	153760044	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ccgcaagaccattgtgtgccCgatgattgatgtaattgacc	10	10	0	4			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	5	153760044	153760044	C	G	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	1	known	missense	c.791	p.P264R	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	74	0	0	87	48	35.56	-	-	-	G	153760044	C	G	153760044	3	3	43	1	0	0	0	0	1	0	0	0	6258	652	23	3	813	3	GALNT10	5	153760044	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09		153760044	27155216	5	2283										
HRH2	0	genome.wustl.edu	37	chr5	175110783	175110783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	tccaggtcaatgaagtgtacGggctggtggatgggctggtc	17	7	1	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	5	175110783	175110783	G	A	SNP	HRH2	ENST00000377291	human	ensembl	69_37n	1	known	missense	c.547	p.G183R	0.990	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,prints_7TM_GPCR_Rhodpsn,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH2	HGNC	ENSG00000113749	220	1	0.45	115	73	38.62	-	-	-	A	175110783	G	A	175110783	3	1	43	1	0	0	0	0	1	0	0	0	7407	1116	39	1	549	1	HRH2	5	175110783	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09	21350739	175110783	5804477	6	2284										
PRKAG2	0	genome.wustl.edu	37	chr7	151257608	151257609	+	Splice_Site	DEL	AC	AC	-													0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	aggtcagaaaccagcattttAcctgctggtgtgaggatcag							TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	7	151257608	151257609	AC	-	DEL	PRKAG2	ENST00000287878	human	ensembl	69_37n	-1	known	splice_site_del	c.1678+1_1678+1	e15+1	0.999:1.000	-	-	-	no_errors	PRKAG2	HGNC	ENSG00000106617	123	0	0	182	302	62.01	-	-	-	-	151257609	AC	-	151257608	8	5	43	1	0	1	0	1	0	0	1	0	12582	405	14	0	37	0	PRKAG2	7	151257608	Splice_Site	DEL	AC	TCGA-A2-A0EM-01A-11W-A050-09		151257608	7881055	7	2285										
MLL3	0	genome.wustl.edu	37	chr7	151877053	151877054	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	tgttcccaggatagggaggtINSgggggtctggtgaaagcctg							TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	7	151877053	151877054	-	G	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7308_7307	p.P2437fs	0.334:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	74	0	0	244	125	33.88	-	-	-	G	151877054	-	G	151877053	7	5	43	1	0	1	1	0	0	0	0	0	9693	1683	59	0	7519	0	MLL3	7	151877053	Frame_Shift_Ins	INS	-	TCGA-A2-A0EM-01A-11W-A050-09	619445	151877053	7261610	8	2286										
SGCZ	0	genome.wustl.edu	37	chr8	14412415	14412415	+	Frame_Shift_Del	DEL	T	T	-													0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ttattctgttgggttgctagTatgtattgttctcgtgtcat							TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	8	14412415	14412415	T	-	DEL	SGCZ	ENST00000382080	human	ensembl	69_37n	-1	known	frame_shift_del	c.60	p.L21fs	0.953	NULL	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053	277	0	0	591	289	32.51	-	-	-	-	14412415	T	-	14412415	7	5	43	1	0	1	0	1	0	0	0	0	14292	1628	57	0	906	0	SGCZ	8	14412415	Frame_Shift_Del	DEL	T	TCGA-A2-A0EM-01A-11W-A050-09		14412415	131951607	9	2287										
COL27A1	0	genome.wustl.edu	37	chr9	117004482	117004482	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	tctagggagatgagggacccAtggggccgccaggggcccct	17	12	1	2			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	9	117004482	117004482	A	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.2851	p.M951L	0.985	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	42	0	0	66	42	38.89	-	-	-	T	117004482	A	T	117004482	3	4	43	1	0	0	0	0	1	0	0	0	3715	217	8	5	2937	5	COL27A1	9	117004482	Missense_Mutation	SNP	A	TCGA-A2-A0EM-01A-11W-A050-09		117004482	24208949	10	2288										
CPN1	0	genome.wustl.edu	37	chr10	101835672	101835672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	cccttggacctcgtacctggGcagcagccacctcgtagccg	11	17	0	0			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	10	101835672	101835672	G	A	SNP	CPN1	ENST00000370418	human	ensembl	69_37n	-1	known	missense	c.416	p.A139V	0.003	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054	146	0	0	109	65	37.36	-	-	-	A	101835672	G	A	101835672	3	1	43	1	0	0	0	0	1	0	0	0	3839	1203	42	4	992	4	CPN1	10	101835672	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09		101835672	33699075	11	2289										
TPP1	0	genome.wustl.edu	37	chr11	6638532	6638532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	attcaccccataggtgttacCaaagtccacatggggggcca	10	12	1	0			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	6638532	6638532	C	T	SNP	TPP1	ENST00000299427	human	ensembl	69_37n	-1	known	missense	c.508	p.V170M	1.000	pfam_Peptidase_S53_propep,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340	63	0	0	76	51	40.16	-	-	-	T	6638532	C	T	6638532	3	4	43	1	0	0	0	0	1	0	0	0	16507	608	21	4	1219	4	TPP1	11	6638532	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09		6638532	128367984	12	2290										
ARHGAP1	0	genome.wustl.edu	37	chr11	46702223	46702224	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	tccaaactgctggttgggcaINSgggggggccgtgggggcatg							TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	46702223	46702224	-	G	INS	ARHGAP1	ENST00000311956	human	ensembl	69_37n	-1	known	frame_shift_ins	c.710_709	p.L237fs	1.000:0.993	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220	15	0	0	17	4	19.05	-	-	-	G	46702224	-	G	46702223	7	5	43	1	0	1	1	0	0	0	0	0	863	188	7	0	633	0	ARHGAP1	11	46702223	Frame_Shift_Ins	INS	-	TCGA-A2-A0EM-01A-11W-A050-09	40063691	46702223	88304293	13	2291										
MYO7A	0	genome.wustl.edu	37	chr11	76910861	76910861	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	cctgcaggataaccccaaccCcggtgagtggctgctggtat	12	13	0	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	11	76910861	76910861	C	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.4850	p.P1617H	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	27	0	0	22	14	37.84	-	-	-	A	76910861	C	A	76910861	3	1	43	1	0	0	0	0	1	0	0	0	10154	623	22	4	5018	4	MYO7A	11	76910861	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09	30208638	76910861	58095655	14	2292										
RCOR1	0	genome.wustl.edu	37	chr14	103167650	103167650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ccattgccaaagaaaagcatGggtacaacatggaacaggta	10	8	0	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	14	103167650	103167650	G	T	SNP	RCOR1	ENST00000262241	human	ensembl	69_37n	1	known	missense	c.481	p.G161W	1.000	pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,prints_Antifreeze_1,pfscan_ELM2_dom	-	no_errors	RCOR1	HGNC	ENSG00000089902	324	0	0	542	270	33.25	-	-	-	T	103167650	G	T	103167650	3	4	43	1	0	0	0	0	1	0	0	0	13265	1348	47	4	486	4	RCOR1	14	103167650	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09		103167650	4181890	15	2293										
PPP1R13B	0	genome.wustl.edu	37	chr14	104224078	104224078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	agagggtaagttcaacacgtGgattcccaacctaaacaaaa	8	9	1	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	14	104224078	104224078	G	T	SNP	PPP1R13B	ENST00000202556	human	ensembl	69_37n	-1	known	missense	c.365	p.P122Q	0.997	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	135	0	0	159	75	32.05	-	-	-	T	104224078	G	T	104224078	3	4	43	1	0	0	0	0	1	0	0	0	12434	1348	47	4	2959	4	PPP1R13B	14	104224078	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09	1056428	104224078	3125462	16	2294										
MAGEL2	0	genome.wustl.edu	37	chr15	23890165	23890165	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ctcccagggccttgggccctGccagtcatgaaaggctagcg	13	14	1	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	15	23890165	23890165	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	nonsense	c.916	p.Q306*	0.780	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	52	0	0	24	14	35.9	-	-	-	A	23890165	G	A	23890165	4	1	43	1	0	0	0	0	0	1	0	0	9260	1328	46	4	1028	4	MAGEL2	15	23890165	Nonsense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09		23890165	78641227	17	2295										
MYEF2	0	genome.wustl.edu	37	chr15	48441260	48441260	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	aatttctcttttagtttctgCcaagtcaagtcaaaaggtag	7	7	4	0			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	15	48441260	48441260	C	T	SNP	MYEF2	ENST00000324324	human	ensembl	69_37n	-1	known	nonsense	c.1608	p.W536*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177	223	0	0	362	194	34.89	-	-	-	T	48441260	C	T	48441260	4	4	43	1	0	0	0	0	0	1	0	0	10096	740	26	4	202	4	MYEF2	15	48441260	Nonsense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09	24551095	48441260	54090132	18	2296										
CCDC105	0	genome.wustl.edu	37	chr19	15131381	15131381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ttctggagcaggccagacgcCactcatgggtgaacctctcc	11	14	3	2			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	19	15131381	15131381	C	T	SNP	CCDC105	ENST00000292574	human	ensembl	69_37n	1	known	missense	c.784	p.H262Y	0.995	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994	109	0	0	116	65	35.91	-	-	-	T	15131381	C	T	15131381	3	4	43	1	0	0	0	0	1	0	0	0	2765	594	21	4	794	4	CCDC105	19	15131381	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09		15131381	43997602	19	2297										
PLCB4	0	genome.wustl.edu	37	chr20	9401989	9401989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	ataagaaaattggcacctacGtagaggtggatatgtatggg	13	4	0	2			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	20	9401989	9401989	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2164	p.V722I	1.000	pirsf_PLC-beta,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	52	0	0	99	53	34.87	-	-	-	A	9401989	G	A	9401989	3	1	43	1	0	0	0	0	1	0	0	0	12104	1145	40	1	2294	1	PLCB4	20	9401989	Missense_Mutation	SNP	G	TCGA-A2-A0EM-01A-11W-A050-09		9401989	53623531	20	2298										
ZNF70	0	genome.wustl.edu	37	chr22	24086804	24086804	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	gggagctctggctgaaggccTtcccgcactcacagcactca	11	15	3	1			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	22	24086804	24086804	T	C	SNP	ZNF70	ENST00000341976	human	ensembl	69_37n	-1	known	missense	c.524	p.K175R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF70	HGNC	ENSG00000187792	318	0	0	332	168	33.6	-	-	-	C	24086804	T	C	24086804	3	2	43	1	0	0	0	0	1	0	0	0	18199	1609	56	5	820	5	ZNF70	22	24086804	Missense_Mutation	SNP	T	TCGA-A2-A0EM-01A-11W-A050-09		24086804	27217762	21	2299										
ZMAT5	0	genome.wustl.edu	37	chr22	30136653	30136653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	acgtaccctccacctggatgCtcagctcctgcaggtctcgc	9	17	2	0			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	22	30136653	30136653	C	A	SNP	ZMAT5	ENST00000344318	human	ensembl	69_37n	-1	known	missense	c.257	p.S86I	0.617	NULL	pfam_Znf_CCCH,pfam_Znf_U1-C,smart_Znf_CCCH	-	no_errors	ZMAT5	HGNC	ENSG00000100319	92	0	0	93	19	16.96	-	-	-	A	30136653	C	A	30136653	3	1	43	1	0	0	0	0	1	0	0	0	17791	797	28	4	267	4	ZMAT5	22	30136653	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09	6049849	30136653	21167913	22	2300										
GPR143	0	genome.wustl.edu	37	chrX	9716674	9716674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.971230186009232	0.772727272727273	0	0.85	1	1	0	cacagagcagggtggccaggCcccacgccatgatgtgatac	13	13	0	3			TCGA-A2-A0EM-01A-11W-A050-09	TCGA-A2-A0EM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e01c6b8-9edd-4965-b247-ee7e68124f48	475ab163-650e-4139-b373-13cebd7a3f7d	X	9716674	9716674	C	T	SNP	GPR143	ENST00000380929	human	ensembl	69_37n	-1	known	missense	c.548	p.G183D	1.000	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850	93	0	0	70	45	39.13	-	-	-	T	9716674	C	T	9716674	3	4	43	1	0	0	0	0	1	0	0	0	6701	739	26	4	750	4	GPR143	23	9716674	Missense_Mutation	SNP	C	TCGA-A2-A0EM-01A-11W-A050-09		9716674	145553886	23	2301										
SPEN	0	genome.wustl.edu	37	chr1	16248819	16248820	+	Frame_Shift_Del	DEL	TT	TT	-													0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ctggtcaagacatcagagacTtttatgaaatgttagccgaa							TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	16248819	16248820	TT	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.1825_1826	p.F609fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	205	0	0	186	50	20.92	-	-	-	-	16248820	TT	-	16248819	7	5	44	1	0	1	0	1	0	0	0	0	15129	1609	56	0	1863	0	SPEN	1	16248819	Frame_Shift_Del	DEL	TT	TCGA-A2-A0EN-01A-13D-A099-09		16248819	233001802	1	2302										
LRRC7	0	genome.wustl.edu	37	chr1	70505012	70505012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	aaatggccatgtttagaaggGtcaatgagcctcatgagctg	12	7	2	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	70505012	70505012	G	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.3391	p.V1131F	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	45	0	0	21	7	25	-	-	-	T	70505012	G	T	70505012	3	4	44	1	0	0	0	0	1	0	0	0	9086	1261	44	4	3465	4	LRRC7	1	70505012	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	54256193	70505012	178745609	2	2303										
SIPA1L2	0	genome.wustl.edu	37	chr1	232607134	232607134	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	cacctataacacacattttcGgtacatggattatgcacttt	5	10	0	0			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	232607134	232607134	G	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	silent	c.2226	p.T742	0.001	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	125	0	0	149	61	29.05	-	-	-	C	232607134	G	C	232607134	2	2	44	1	0	0	0	0	0	0	0	1	14419	1103	39	3		3	SIPA1L2	1	232607134	Silent	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	162102122	232607134	16643487	3	2304										
ZP4	0	genome.wustl.edu	37	chr1	238050144	238050144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	agttgccaccagttcattttCatatactgctcggtctccag	7	12	3	0			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	238050144	238050144	C	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.766	p.E256K	0.993	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	147	0	0	242	37	13.26	-	-	-	T	238050144	C	T	238050144	3	4	44	1	0	0	0	0	1	0	0	0	18311	835	29	2	884	2	ZP4	1	238050144	Missense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	5443010	238050144	11200477	4	2305										
NLRC4	0	genome.wustl.edu	37	chr2	32475353	32475353	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	aagattcctgtctccagagaGgcctcttggcgatggaaagt	12	9	2	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	32475353	32475353	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.1580	p.P527L	0.130	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	129	0	0	168	53	23.98	-	-	-	A	32475353	G	A	32475353	3	1	44	1	0	0	0	0	1	0	0	0	10541	1000	35	4	1518	4	NLRC4	2	32475353	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		32475353	210724020	5	2306										
LCT	0	genome.wustl.edu	37	chr2	136561583	136561583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	tccaaaacttcaccttgtctCccagcctctggaagagcaca	6	15	3	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	136561583	136561583	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.4580	p.G1527E	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	128	0	0	144	24	14.29	-	-	-	T	136561583	C	T	136561583	3	4	44	1	0	0	0	0	1	0	0	0	8747	855	30	2	1231	2	LCT	2	136561583	Missense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	104086230	136561583	106637790	6	2307										
TTN	0	genome.wustl.edu	37	chr2	179456460	179456460	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	cacactctaagtttgtcacaGtcttaaatttaatccagtcc	4	11	3	0			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	179456460	179456460	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52382	p.T17461N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	188	0	0	174	40	18.69	-	-	-	T	179456460	G	T	179456460	3	4	44	1	0	0	0	0	1	0	0	0	16832	1029	36	4	48133	4	TTN	2	179456460	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	42894877	179456460	63742913	7	2308										
ANKZF1	0	genome.wustl.edu	37	chr2	220100548	220100548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gcagcaggagcaggaggagcGtgaacgagaagagcagcggc	19	8	0	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	220100548	220100548	G	A	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	1	known	missense	c.1922	p.R641H	0.015	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	170	0	0	79	10	11.11	-	-	-	A	220100548	G	A	220100548	3	1	44	1	0	0	0	0	1	0	0	0	692	1145	40	1	1964	1	ANKZF1	2	220100548	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	40644088	220100548	23098825	8	2309										
PSMD1	0	genome.wustl.edu	37	chr2	231937097	231937098	+	Frame_Shift_Ins	INS	-	-	A													0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ctgtgcctggatccactaatINSacgggtactgttccgggatc							TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	231937097	231937098	-	A	INS	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	frame_shift_ins	c.849_850	p.T283fs	0.998:1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	153	0	0	153	33	17.74	-	-	-	A	231937098	-	A	231937097	7	5	44	1	0	1	1	0	0	0	0	0	12772	1403	49	0	875	0	PSMD1	2	231937097	Frame_Shift_Ins	INS	-	TCGA-A2-A0EN-01A-13D-A099-09	11836549	231937097	11262276	9	2310										
PLCXD2	0	genome.wustl.edu	37	chr3	111439672	111439672	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gacctggtggactttgctgcGactgtcatcaagttgaatga	12	8	2	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	111439672	111439672	G	A	SNP	PLCXD2	ENST00000472215	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.122	-	-	-	no_errors	PLCXD2	HGNC	ENSG00000240891	139	0	0	170	46	21.3	-	-	-	A	111439672	G	A	111439672	1	1	44	0	1	0	0	0	0	0	0	0	12116	1045	37	1		1	PLCXD2	3	111439672	RNA	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		111439672	86582758	10	2311										
RASA2	0	genome.wustl.edu	37	chr3	141292064	141292064	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ataatgtagaaaataataagGtaagtccttgttatattatt	6	2	0	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	141292064	141292064	G	T	SNP	RASA2	ENST00000452898	human	ensembl	69_37n	1	known	splice_site	c.1359+1	e13+1	1.000	-	-	-	no_errors	RASA2	HGNC	ENSG00000155903	53	0	0	40	10	20	-	-	-	T	141292064	G	T	141292064	5	4	44	1	0	0	0	0	0	0	1	0	13144	1275	44	4	1410	4	RASA2	3	141292064	Splice_Site	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	29852392	141292064	56730366	11	2312										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0	95	21	18.1	-	-	-	G	178952085	A	G	178952085	3	3	44	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0EN-01A-13D-A099-09	37660021	178952085	19070345	12	2313			1	6		2	2	55	A		5.232969e-05
PIK3CA	0	genome.wustl.edu	37	chr3	178952139	178952139	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	cttccacacaattaaacagcAtgcattgaactgaaaagata	5	9	0	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	178952139	178952139	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3194	p.H1065L	1.000	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	47	0	0	69	21	23.33	-	-	-	T	178952139	A	T	178952139	3	4	44	1	0	0	0	0	1	0	0	0	11987	217	8	5	3272	5	PIK3CA	3	178952139	Missense_Mutation	SNP	A	TCGA-A2-A0EN-01A-13D-A099-09	54	178952139	19070291	13	2314			1	6		2	2	55	A		5.232969e-05
MUC4	0	genome.wustl.edu	37	chr3	195489057	195489057	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	cgagacggtggcccagccgtCgaagctggccgagacctcag	15	14	1	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	195489057	195489057	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.14413	p.D4805Y	0.395	pfam_VWF_type-D,smart_VWF_type-D	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	29	0	0	32	6	15.79	-	-	-	A	195489057	C	A	195489057	3	1	44	1	0	0	0	0	1	0	0	0	10050	884	31	3	1873	3	MUC4	3	195489057	Missense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	16536918	195489057	2533373	14	2315										
MSX2	0	genome.wustl.edu	37	chr5	174156285	174156285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ccgtcagaaacagtacctctCcattgcagagcgtgcagagt	10	12	2	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	5	174156285	174156285	C	T	SNP	MSX2	ENST00000239243	human	ensembl	69_37n	1	known	missense	c.503	p.S168F	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149	89	0	0	45	14	23.73	-	-	-	T	174156285	C	T	174156285	3	4	44	1	0	0	0	0	1	0	0	0	9968	855	30	2	509	2	MSX2	5	174156285	Missense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09		174156285	6758975	15	2316										
SLC29A4	0	genome.wustl.edu	37	chr7	5327487	5327487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	agcgccttgaggagcccagcGtggcaggcacaccagacccg	14	15	0	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	5327487	5327487	G	A	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	1	known	missense	c.40	p.V14M	0.072	NULL	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	48	0	0	29	5	14.71	-	-	-	A	5327487	G	A	5327487	3	1	44	1	0	0	0	0	1	0	0	0	14626	1145	40	1	42	1	SLC29A4	7	5327487	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		5327487	153811176	16	2317										
AASS	0	genome.wustl.edu	37	chr7	121756793	121756793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gatgatgacgacttaacaccGtcccatacacttttctgagg	8	11	1	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	121756793	121756793	G	A	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	missense	c.788	p.T263M	1.000	pfam_AlaDH/PNT_NAD(H)-bd	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	58	0	0	92	19	17.12	-	-	-	A	121756793	G	A	121756793	3	1	44	1	0	0	0	0	1	0	0	0	24	1145	40	1	2060	1	AASS	7	121756793	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09	116429306	121756793	37381870	17	2318										
MLL3	0	genome.wustl.edu	37	chr7	151859457	151859457	+	Frame_Shift_Del	DEL	T	T	-													0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ctaccattctgttcctccaaTttaggctcctcttggcctgg							TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	151859457	151859457	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11205	p.K3735fs	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	97	0	0	167	32	15.69	-	-	-	-	151859457	T	-	151859457	7	5	44	1	0	1	0	1	0	0	0	0	9693	1490	52	0	3598	0	MLL3	7	151859457	Frame_Shift_Del	DEL	T	TCGA-A2-A0EN-01A-13D-A099-09	30102664	151859457	7279206	18	2319										
MYO7A	0	genome.wustl.edu	37	chr11	76900501	76900501	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	tgggctgtttcgccccctccGagaagtttgtcaaggtagga	13	10	1	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	11	76900501	76900501	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.3616	p.E1206K	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	146	0	0	93	21	18.42	-	-	-	A	76900501	G	A	76900501	3	1	44	1	0	0	0	0	1	0	0	0	10154	1059	37	1	3756	1	MYO7A	11	76900501	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		76900501	58106015	19	2320										
TMEM132B	0	genome.wustl.edu	37	chr12	125834884	125834884	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	tctgtggcagaccagttcacTcttaggtaagaggctttgcc	11	10	3	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	12	125834884	125834884	T	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	silent	c.939	p.T313	0.977	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	47	0	0	31	9	22.5	-	-	-	A	125834884	T	A	125834884	2	1	44	1	0	0	0	0	0	0	0	1	16141	1538	54	5		5	TMEM132B	12	125834884	Silent	SNP	T	TCGA-A2-A0EN-01A-13D-A099-09		125834884	8017011	20	2321										
MTUS2	0	genome.wustl.edu	37	chr13	29933490	29933490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gctgagcggcagctggtgctGcggctgaaggagcggtgtga	20	8	0	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	13	29933490	29933490	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.3027	p.L1009	0.998	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	35	0	0	19	10	34.48	-	-	-	A	29933490	G	A	29933490	2	1	44	1	0	0	0	0	0	0	0	1	10038	1306	46	4		4	MTUS2	13	29933490	Silent	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		29933490	85236388	21	2322										
ZBTB25	0	genome.wustl.edu	37	chr14	64954287	64954287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ggcctgtcacctctgatgagGgtgaggggtggctctgggag	19	8	3	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	14	64954287	64954287	G	A	SNP	ZBTB25	ENST00000261683	human	ensembl	69_37n	-1	known	missense	c.662	p.P221L	0.443	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775	241	1	0.41	134	43	24.29	-	-	-	A	64954287	G	A	64954287	3	1	44	1	0	0	0	0	1	0	0	0	17628	1232	43	4	649	4	ZBTB25	14	64954287	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		64954287	42395253	22	2323										
MYH8	0	genome.wustl.edu	37	chr17	10318470	10318470	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gatgccagcttccctgtagtAccaaagtggattctaatgaa	9	9	1	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	10318470	10318470	A	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	silent	c.768	p.G256	0.725	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	114	0	0	126	54	29.83	-	-	-	G	10318470	A	G	10318470	2	3	44	1	0	0	0	0	0	0	0	1	10113	378	14	5		5	MYH8	17	10318470	Silent	SNP	A	TCGA-A2-A0EN-01A-13D-A099-09		10318470	70876740	23	2324										
TBX4	0	genome.wustl.edu	37	chr17	59560293	59560293	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	acctggacttaccttgcaagCgatcctatctggaagccccc	8	15	1	0			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	59560293	59560293	C	T	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	1	known	nonsense	c.1057	p.R353*	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	46	0	0	48	10	17.24	-	-	-	T	59560293	C	T	59560293	4	4	44	1	0	0	0	0	0	1	0	0	15755	760	27	1	1084	1	TBX4	17	59560293	Nonsense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	49241823	59560293	21634917	24	2325										
ARMC7	0	genome.wustl.edu	37	chr17	73106586	73106586	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	gagcaagtcctcgccaacctCgccaacttcgcttatgaccc	7	17	0	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	73106586	73106586	C	T	SNP	ARMC7	ENST00000245543	human	ensembl	69_37n	1	known	silent	c.120	p.L40	0.996	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC7	HGNC	ENSG00000125449	94	0	0	60	12	16.67	-	-	-	T	73106586	C	T	73106586	2	4	44	1	0	0	0	0	0	0	0	1	960	871	31	1		1	ARMC7	17	73106586	Silent	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	13546293	73106586	8088624	25	2326										
RBM39	0	genome.wustl.edu	37	chr20	34302208	34302208	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	aaaatgaactagcactcgaaGcatcagtacgttcagtaaca	7	9	2	1			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	20	34302208	34302208	G	T	SNP	RBM39	ENST00000448303	human	ensembl	69_37n	-1	novel	nonsense	c.546	p.C182*	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_start_codon:pseudogene:no_stop_codon	RBM39	HGNC	ENSG00000131051	122	1	0.81	139	34	19.54	-	-	-	T	34302208	G	T	34302208	4	4	44	1	0	0	0	0	0	1	0	0	13216	971	34	4	625	4	RBM39	20	34302208	Nonsense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		34302208	28723312	26	2327										
RUNX1	0	genome.wustl.edu	37	chr21	36252995	36252995	+	Frame_Shift_Del	DEL	C	C	-													0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	cagagtgccatctggaacatCccctagggccaccacctaaa							TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	21	36252995	36252995	C	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.367	p.D123fs	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	89	0	0	142	30	17.34	-	-	-	-	36252995	C	-	36252995	7	5	44	1	0	1	0	1	0	0	0	0	13832	855	30	0	1128	0	RUNX1	21	36252995	Frame_Shift_Del	DEL	C	TCGA-A2-A0EN-01A-13D-A099-09		36252995	11876900	27	2328										
PHEX	0	genome.wustl.edu	37	chrX	22231059	22231059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	tccagaagcctttcttttggGgaacagaatatcctcggtga	10	9	1	3			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	22231059	22231059	G	A	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	missense	c.1684	p.G562R	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	112	0	0	161	39	19.5	-	-	-	A	22231059	G	A	22231059	3	1	44	1	0	0	0	0	1	0	0	0	11893	1233	43	4	1746	4	PHEX	23	22231059	Missense_Mutation	SNP	G	TCGA-A2-A0EN-01A-13D-A099-09		22231059	133039501	28	2329										
FAM47B	0	genome.wustl.edu	37	chrX	34961961	34961961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ctgcctggaacctcccaacaCtcatcgggtgtccagtttcc	8	16	1	0			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	34961961	34961961	C	G	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1013	p.T338S	0.712	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	87	0	0	67	27	28.72	-	-	-	G	34961961	C	G	34961961	3	3	44	1	0	0	0	0	1	0	0	0	5616	565	20	4	1015	4	FAM47B	23	34961961	Missense_Mutation	SNP	C	TCGA-A2-A0EN-01A-13D-A099-09	12730902	34961961	120308599	29	2330										
IL2RG	0	genome.wustl.edu	37	chrX	70330750	70330750	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.430288461538462	0	0.491758241758242	1	1	0	ctcgtcccttctcataccaaTaatgcagagtgaggttggta	9	10	1	2			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	70330750	70330750	T	A	SNP	IL2RG	ENST00000374202	human	ensembl	69_37n	-1	known	missense	c.266	p.Y89F	0.426	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168	120	0	0	114	47	29.19	-	-	-	A	70330750	T	A	70330750	3	1	44	1	0	0	0	0	1	0	0	0	7742	1406	49	5	871	5	IL2RG	23	70330750	Missense_Mutation	SNP	T	TCGA-A2-A0EN-01A-13D-A099-09	35368789	70330750	84939810	30	2331										
MACF1	0	genome.wustl.edu	37	chr1	39853143	39853144	+	Frame_Shift_Del	DEL	TT	TT	-													0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	aaaggactctacaaaaccagTtggttgagctcaaaaaccat							TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	1	39853143	39853144	TT	-	DEL	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	frame_shift_del	c.8443_8444	p.L2815fs	0.984:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	58	0	0	105	136	55.28	-	-	-	-	39853144	TT	-	39853143	7	5	45	1	0	1	0	1	0	0	0	0	9211	1722	60	0	14804	0	MACF1	1	39853143	Frame_Shift_Del	DEL	TT	TCGA-A2-A0EO-01A-11W-A050-09		39853143	209397478	1	2332										
HIST2H2BE	0	genome.wustl.edu	37	chr1	149857851	149857851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ggtgaccgccttggtgccctCggacacggcgtgcttggcca	15	14	0	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	1	149857851	149857851	C	T	SNP	HIST2H2BE	ENST00000369155	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	65	0	0	81	33	28.95	-	-	-	T	149857851	C	T	149857851	3	4	45	1	0	0	0	0	1	0	0	0	7230	893	31	1	44	1	HIST2H2BE	1	149857851	Missense_Mutation	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09	110004708	149857851	99392770	2	2333										
MR1	0	genome.wustl.edu	37	chr1	181021547	181021547	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ccagtggggatggaacctatCaggcgtgggcatcaattgag	15	8	2	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	1	181021547	181021547	C	T	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	nonsense	c.781	p.Q261*	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	43	0	0	63	16	20.25	-	-	-	T	181021547	C	T	181021547	4	4	45	1	0	0	0	0	0	1	0	0	9824	827	29	2	795	2	MR1	1	181021547	Nonsense_Mutation	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09	31163696	181021547	68229074	3	2334										
SRD5A2	0	genome.wustl.edu	37	chr2	31754498	31754498	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	aatgatctcaccgaggaaatTggctccagaaacatacgtaa	8	9	1	2			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	2	31754498	31754498	T	C	SNP	SRD5A2	ENST00000233139	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SRD5A2	HGNC	ENSG00000049319	139	0	0	99	53	34.42	-	-	-	C	31754498	T	C	31754498	1	2	45	0	1	0	0	0	0	0	0	0	15230	1812	63	5		5	SRD5A2	2	31754498	RNA	SNP	T	TCGA-A2-A0EO-01A-11W-A050-09		31754498	211444875	4	2335										
SRBD1	0	genome.wustl.edu	37	chr2	45704138	45704138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ccacatagctttacctgataCattccaactccaatgtgctt	4	13	0	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	2	45704138	45704138	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.2043	p.M681I	1.000	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	164	0	0	203	32	13.62	-	-	-	T	45704138	C	T	45704138	3	4	45	1	0	0	0	0	1	0	0	0	15224	478	17	4	968	4	SRBD1	2	45704138	Missense_Mutation	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09	13949640	45704138	197495235	5	2336										
RHOQ	0	genome.wustl.edu	37	chr2	46770905	46770906	+	Frame_Shift_Ins	INS	-	-	G													0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	cttgcagtcagcgtcaccgtINSggggggcaagcagtacctcc							TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	2	46770905	46770906	-	G	INS	RHOQ	ENST00000238738	human	ensembl	69_37n	1	known	frame_shift_ins	c.155_156	p.K55fs	1.000:0.949	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729	42	0	0	19	4	17.39	-	-	-	G	46770906	-	G	46770905	7	5	45	1	0	1	1	0	0	0	0	0	13426	1696	59	0	161	0	RHOQ	2	46770905	Frame_Shift_Ins	INS	-	TCGA-A2-A0EO-01A-11W-A050-09	1066767	46770905	196428468	6	2337										
DPP10	0	genome.wustl.edu	37	chr2	116497433	116497433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	atccctcggtttactggagcGttgtatcccaaaggaaagca	10	10	0	0			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	2	116497433	116497433	G	A	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	silent	c.828	p.A276	0.002	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	81	0	0	162	26	13.54	-	-	-	A	116497433	G	A	116497433	2	1	45	1	0	0	0	0	0	0	0	1	4762	1132	40	1		1	DPP10	2	116497433	Silent	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	69726528	116497433	126701940	7	2338										
TRAK1	0	genome.wustl.edu	37	chr3	42226205	42226205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ggatttagaattggccgctcGcatcggccagtcgttgttga	13	9	0	2			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	3	42226205	42226205	G	A	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	missense	c.218	p.R73H	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	128	0	0	98	25	20.33	-	-	-	A	42226205	G	A	42226205	3	1	45	1	0	0	0	0	1	0	0	0	16545	1087	38	1	522	1	TRAK1	3	42226205	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09		42226205	155796225	8	2339										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	93	0	0	101	42	29.37	-	-	-	A	178936082	G	A	178936082	3	1	45	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	136709877	178936082	19086348	9	2340										
ENPEP	0	genome.wustl.edu	37	chr4	111397624	111397624	+	Frame_Shift_Del	DEL	T	T	-													0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tactgcattcaaacgaaacaTgtggccattctctgtgcggt							TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	4	111397624	111397624	T	-	DEL	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	frame_shift_del	c.54	p.H18fs	0.756	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	195	0	0	217	104	31.23	-	-	-	-	111397624	T	-	111397624	7	5	45	1	0	1	0	1	0	0	0	0	5165	1461	51	0	56	0	ENPEP	4	111397624	Frame_Shift_Del	DEL	T	TCGA-A2-A0EO-01A-11W-A050-09		111397624	79756652	10	2341										
SH3D19	0	genome.wustl.edu	37	chr4	152086824	152086824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ctcgttcttttattggttctGtttttgcagggagctgaaag	11	6	2	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	4	152086824	152086824	G	A	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.719	p.T240I	0.990	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	513	0	0	751	86	10.27	-	-	-	A	152086824	G	A	152086824	3	1	45	1	0	0	0	0	1	0	0	0	14337	1377	48	4	1709	4	SH3D19	4	152086824	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	40689200	152086824	39067452	11	2342										
MDC1	0	genome.wustl.edu	37	chr6	30673105	30673105	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	cggagctcaggggctgtgggCacaactggttcaggggtctt	17	9	3	0			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	6	30673105	30673105	C	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	silent	c.3855	p.V1285	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	62	0	0	169	36	17.56	-	-	-	G	30673105	C	G	30673105	2	3	45	1	0	0	0	0	0	0	0	1	9474	697	25	4		4	MDC1	6	30673105	Silent	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09		30673105	140441962	12	2343										
GJA1	0	genome.wustl.edu	37	chr6	121768373	121768373	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tgtcaatgtggacatgcactTgaagcagattgagataaaga	11	5	1	4			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	6	121768373	121768373	T	G	SNP	GJA1	ENST00000282561	human	ensembl	69_37n	1	known	missense	c.380	p.L127W	0.999	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661	109	0	0	67	70	51.09	-	-	-	G	121768373	T	G	121768373	3	3	45	1	0	0	0	0	1	0	0	0	6452	1821	63	5	382	5	GJA1	6	121768373	Missense_Mutation	SNP	T	TCGA-A2-A0EO-01A-11W-A050-09	91095268	121768373	49346694	13	2344										
KLRG2	0	genome.wustl.edu	37	chr7	139138950	139138950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	gcctggagactgggtatctgCccaggaagtcctgagggaga	16	9	1	3			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	7	139138950	139138950	C	G	SNP	KLRG2	ENST00000340940	human	ensembl	69_37n	-1	known	missense	c.1016	p.G339A	0.776	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883	8	0	0	22	6	21.43	-	-	-	G	139138950	C	G	139138950	3	3	45	1	0	0	0	0	1	0	0	0	8475	739	26	4	221	4	KLRG2	7	139138950	Missense_Mutation	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09		139138950	19999713	14	2345										
PLA2G12B	0	genome.wustl.edu	37	chr10	74714297	74714297	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	agctccagaaaagaatcgaaGtagctattgacggattcaaa	9	7	1	3			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	10	74714297	74714297	G	A	SNP	PLA2G12B	ENST00000373032	human	ensembl	69_37n	-1	known	silent	c.147	p.Y49	1.000	pfam_PLipase_A2_secretory_G12	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	-	no_errors	PLA2G12B	HGNC	ENSG00000138308	64	0	0	60	19	24.05	-	-	-	A	74714297	G	A	74714297	2	1	45	1	0	0	0	0	0	0	0	1	12065	1024	36	4		4	PLA2G12B	10	74714297	Silent	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09		74714297	60820450	15	2346										
PNLIPRP3	0	genome.wustl.edu	37	chr10	118202578	118202578	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ttgaaacaggagatcagtgcGgttaattcttcaactatcca	8	8	3	2			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	10	118202578	118202578	G	A	SNP	PNLIPRP3	ENST00000369230	human	ensembl	69_37n	1	known	silent	c.216	p.A72	0.419	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837	74	0	0	61	26	29.55	-	-	-	A	118202578	G	A	118202578	2	1	45	1	0	0	0	0	0	0	0	1	12226	1103	39	1		1	PNLIPRP3	10	118202578	Silent	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	43488281	118202578	17332169	16	2347										
DEAF1	0	genome.wustl.edu	37	chr11	687941	687941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	cctgttcttgtacagagtgcCgctgatgttccggcaccgta	11	12	1	2			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	11	687941	687941	C	A	SNP	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	missense	c.634	p.G212C	1.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	33	0	0	64	14	17.95	-	-	-	A	687941	C	A	687941	3	1	45	1	0	0	0	0	1	0	0	0	4411	652	23	3	1099	3	DEAF1	11	687941	Missense_Mutation	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09		687941	134318575	17	2348										
C11orf9	0	genome.wustl.edu	37	chr11	61543803	61543804	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tcctctgcagggtcaatctgINSccccctgagcaggtcacgaa							TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	11	61543803	61543804	-	C	INS	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	frame_shift_ins	c.1398_1399	p.E468fs	1.000:1.000	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	30	0	0	25	3	10.71	-	-	-	C	61543804	-	C	61543803	7	5	45	1	0	1	1	0	0	0	0	0	1682	1306	46	0	1459	0	C11orf9	11	61543803	Frame_Shift_Ins	INS	-	TCGA-A2-A0EO-01A-11W-A050-09	60855862	61543803	73462713	18	2349										
RAD51AP1	0	genome.wustl.edu	37	chr12	4662226	4662226	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tctctatgagaaaaagtaaaGttaaagaaattaaaaagaaa	6	2	1	3			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	12	4662226	4662226	G	T	SNP	RAD51AP1	ENST00000228843	human	ensembl	69_37n	1	known	missense	c.685	p.V229F	0.993	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247	224	0	0	207	91	30.54	-	-	-	T	4662226	G	T	4662226	3	4	45	1	0	0	0	0	1	0	0	0	13069	1029	36	4	715	4	RAD51AP1	12	4662226	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09		4662226	129189669	19	2350										
PDE3A	0	genome.wustl.edu	37	chr12	20782980	20782980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	aactgccaaacaaagcctagGttctcacagggccttaactt	7	12	1	0			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	12	20782980	20782980	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.1679	p.G560D	0.013	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	108	0	0	137	31	18.34	-	-	-	A	20782980	G	A	20782980	3	1	45	1	0	0	0	0	1	0	0	0	11710	1261	44	4	1701	4	PDE3A	12	20782980	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	16120754	20782980	113068915	20	2351										
SLC25A30	0	genome.wustl.edu	37	chr13	45971426	45971426	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ggaccaagtctcaaccaattTggccaaaagcctttatagag	8	10	1	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	13	45971426	45971426	T	A	SNP	SLC25A30	ENST00000519676	human	ensembl	69_37n	-1	known	silent	c.801	p.P267	0.969	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A30	HGNC	ENSG00000174032	64	0	0	98	18	15.52	-	-	-	A	45971426	T	A	45971426	2	1	45	1	0	0	0	0	0	0	0	1	14583	1799	63	5		5	SLC25A30	13	45971426	Silent	SNP	T	TCGA-A2-A0EO-01A-11W-A050-09		45971426	69198452	21	2352										
ACOT2	0	genome.wustl.edu	37	chr14	74042189	74042189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ccacaaacacttgggtggccAcgaggggacaatcccatcaa	10	13	1	0			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	14	74042189	74042189	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	missense	c.1424	p.H475R	0.000	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	12	0	0	18	10	35.71	-	-	-	G	74042189	A	G	74042189	3	3	45	1	0	0	0	0	1	0	0	0	152	159	6	5	1434	5	ACOT2	14	74042189	Missense_Mutation	SNP	A	TCGA-A2-A0EO-01A-11W-A050-09		74042189	33307351	22	2353										
MGA	0	genome.wustl.edu	37	chr15	42041007	42041007	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ttgcagcctgttaggagtccAagtggaatgaacttattcag	11	7	1	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	15	42041007	42041007	A	T	SNP	MGA	ENST00000564190	human	ensembl	69_37n	1	novel	nonsense	c.1327	p.K443*	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGA	HGNC	ENSG00000174197	76	0	0	124	35	22.01	-	-	-	T	42041007	A	T	42041007	4	4	45	1	0	0	0	0	0	1	0	0	9611	117	5	5	5443	5	MGA	15	42041007	Nonsense_Mutation	SNP	A	TCGA-A2-A0EO-01A-11W-A050-09		42041007	60490385	23	2354										
GPR97	0	genome.wustl.edu	37	chr16	57719640	57719640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tcaccttcctctttggcatgGtggtcctggccctggtggtc	12	13	2	0			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	16	57719640	57719640	G	A	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	missense	c.1342	p.V448M	0.517	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	187	0	0	119	99	45.41	-	-	-	A	57719640	G	A	57719640	3	1	45	1	0	0	0	0	1	0	0	0	6771	1261	44	4	1384	4	GPR97	16	57719640	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09		57719640	32635113	24	2355										
CBFB	0	genome.wustl.edu	37	chr16	67100696	67100696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	tggagtttgatgaggagcgaGcccaggtagggtaacatcag	16	6	1	2			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	16	67100696	67100696	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.394	p.A132T	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	111	0	0	61	56	47.86	-	-	-	A	67100696	G	A	67100696	3	1	45	1	0	0	0	0	1	0	0	0	2724	971	34	4	408	4	CBFB	16	67100696	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	9381056	67100696	23254057	25	2356										
GPS2	0	genome.wustl.edu	37	chr17	7217829	7217830	+	In_Frame_Ins	INS	-	-	ATT													0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ttccttggtctcctctaatgINSacattctctcttccatctcc							TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	17	7217829	7217830	-	ATT	INS	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	in_frame_ins	c.182_181	p.SLEE61in_frame_ins*	0.999:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	246	0	0	162	90	35.71	-	-	-	ATT	7217830	-	ATT	7217829	7	5	45	1	0	1	1	0	0	0	0	0	6784	1294	45	0	837	0	GPS2	17	7217829	In_Frame_Ins	INS	-	TCGA-A2-A0EO-01A-11W-A050-09		7217829	73977381	26	2357										
MYH13	0	genome.wustl.edu	37	chr17	10236473	10236473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	ctcgaggaccccgttacagcGcagctggtgcatgaccaagt	12	13	0	1			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	17	10236473	10236473	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.2092	p.R698C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	126	0	0	39	27	40.91	-	-	-	A	10236473	G	A	10236473	3	1	45	1	0	0	0	0	1	0	0	0	10104	1087	38	1	3816	1	MYH13	17	10236473	Missense_Mutation	SNP	G	TCGA-A2-A0EO-01A-11W-A050-09	3018644	10236473	70958737	27	2358										
ELP2	0	genome.wustl.edu	37	chr18	33722826	33722826	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	gcaagctgttcacaagattgCctgataagaatatggaagct	10	7	1	3			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	18	33722826	33722826	C	T	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	silent	c.693	p.C231	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	151	0	0	171	21	10.94	-	-	-	T	33722826	C	T	33722826	2	4	45	1	0	0	0	0	0	0	0	1	5117	747	26	4		4	ELP2	18	33722826	Silent	SNP	C	TCGA-A2-A0EO-01A-11W-A050-09		33722826	44354422	28	2359										
ZNF471	0	genome.wustl.edu	37	chr19	57036477	57036477	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.929053217008367	0.895522388059702	0	1.02345415778252	0.333333333333333	0.930327025915261	0	actggcaaaagaccctatgaAtgtattgagtgtgggaaggc	13	6	0	3			TCGA-A2-A0EO-01A-11W-A050-09	TCGA-A2-A0EO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e2f9eb7-0660-47ae-b86e-652e99fa69ca	daf64f76-2c6e-4d95-a8d9-1e4034f8d529	19	57036477	57036477	A	T	SNP	ZNF471	ENST00000308031	human	ensembl	69_37n	1	known	missense	c.1041	p.E347D	0.043	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263	17	0	0	29	11	27.5	-	-	-	T	57036477	A	T	57036477	3	4	45	1	0	0	0	0	1	0	0	0	18026	98	4	5	1055	5	ZNF471	19	57036477	Missense_Mutation	SNP	A	TCGA-A2-A0EO-01A-11W-A050-09		57036477	2092506	29	2360										
ANKRD36B	0	genome.wustl.edu	37	chr2	98165911	98165911	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttttctccatccttttttTctctggctatattcaaaaca	2	10	3	0			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	110	1	0.9	244	36	12.81	-	-	-	C	98165911	T	C	98165911	1	2	46	0	1	0	0	0	0	0	0	0	665	1783	62	5		5	ANKRD36B	2	98165911	RNA	SNP	T	TCGA-A2-A0EP-01A-52D-A22X-09		98165911	145033462	1	2361										
THSD7B	0	genome.wustl.edu	37	chr2	137639789	137639789	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aacagtcacttgctgggtatGgaggagcatgaggaagctct	14	7	2	1			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	2	137639789	137639789	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	nonsense	c.41	p.W14*	0.802	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	69	0	0	94	12	11.32	-	-	-	A	137639789	G	A	137639789	4	1	46	1	0	0	0	0	0	1	0	0	15975	1363	47	4		4	THSD7B	2	137639789	Nonsense_Mutation	SNP	G	TCGA-A2-A0EP-01A-52D-A22X-09	39473878	137639789	105559584	2	2362										
RXRA	0	genome.wustl.edu	37	chr9	137293881	137293881	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tacagagcctcggggagcagAgtgccgtgggggtttgagcc	18	9	0	3			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	9	137293881	137293881	A	C	SNP	RXRA	ENST00000484822	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	27	0	0	33	4	10.81	-	-	-	C	137293881	A	C	137293881	1	2	46	0	1	0	0	0	0	0	0	0	13849	319	11	5		5	RXRA	9	137293881	RNA	SNP	A	TCGA-A2-A0EP-01A-52D-A22X-09		137293881	3919550	3	2363										
TCEB3C	0	genome.wustl.edu	37	chr18	44554806	44554806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccggggtcagcggctcctgCagacttctcttgcctcctgg	12	15	2	1			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	18	44554806	44554806	C	G	SNP	TCEB3C	ENST00000330682	human	ensembl	69_37n	-1	known	missense	c.1408	p.A470P	0.004	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3C	HGNC	ENSG00000183791	12	0	0	13	5	27.78	-	-	-	G	44554806	C	G	44554806	3	3	46	1	0	0	0	0	1	0	0	0	15778	710	25	4	1879	4	TCEB3C	18	44554806	Missense_Mutation	SNP	C	TCGA-A2-A0EP-01A-52D-A22X-09		44554806	33522442	4	2364										
CACNA1A	0	genome.wustl.edu	37	chr19	13322934	13322934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacctggttctctgcagggaGgcggggcatggaggcagccc	17	12	1	0			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	19	13322934	13322934	G	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.6286	p.L2096I	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	26	0	0	23	4	14.81	-	-	-	T	13322934	G	T	13322934	3	4	46	1	0	0	0	0	1	0	0	0	2563	1000	35	4	1254	4	CACNA1A	19	13322934	Missense_Mutation	SNP	G	TCGA-A2-A0EP-01A-52D-A22X-09		13322934	45806049	5	2365										
UQCC	0	genome.wustl.edu	37	chr20	33891661	33891661	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttcaggccactttctgcagGgtcctggaccaacaggcact	11	13	2	0			TCGA-A2-A0EP-01A-52D-A22X-09	TCGA-A2-A0EP-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	524b38df-3bfc-43b7-92fd-163f89a0c81f	a2779eee-d38c-4f4b-9b82-6d0141fe1bb1	20	33891661	33891661	G	T	SNP	UQCC	ENST00000496812	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.639	-	-	-	no_errors	UQCC	HGNC	ENSG00000101019	32	0	0	40	5	11.11	-	-	-	T	33891661	G	T	33891661	1	4	46	0	1	0	0	0	0	0	0	0	17112	1247	43	4		4	UQCC	20	33891661	RNA	SNP	G	TCGA-A2-A0EP-01A-52D-A22X-09		33891661	29133859	6	2366										
LCK	0	genome.wustl.edu	37	chr1	32741215	32741215	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aaggacgcggagcggcagctCctggcgcccgggaacactca	15	14	1	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	32741215	32741215	C	T	SNP	LCK	ENST00000333070	human	ensembl	69_37n	1	known	silent	c.423	p.L141	0.476	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866	23	0	0	35	10	22.22	-	-	-	T	32741215	C	T	32741215	2	4	47	1	0	0	0	0	0	0	0	1	8730	842	30	2		2	LCK	1	32741215	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		32741215	216509406	1	2367										
GBP7	0	genome.wustl.edu	37	chr1	89613445	89613445	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tgcagcacaaagtcttccttCtttttctccatggtgtcctg	7	12	3	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	89613445	89613445	C	G	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.1170	p.K390N	0.006	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	158	0	0	176	21	10.66	-	-	-	G	89613445	C	G	89613445	3	3	47	1	0	0	0	0	1	0	0	0	6329	912	32	2	762	2	GBP7	1	89613445	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	56872230	89613445	159637176	2	2368										
FAM20B	0	genome.wustl.edu	37	chr1	179013003	179013003	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atgaagctaaagcagcgagtCgtgctgttagcaattctcct	10	9	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	179013003	179013003	C	T	SNP	FAM20B	ENST00000263733	human	ensembl	69_37n	1	known	silent	c.21	p.V7	0.769	NULL	pfam_DUF1193	-	no_errors	FAM20B	HGNC	ENSG00000116199	137	0	0	127	30	18.99	-	-	-	T	179013003	C	T	179013003	2	4	47	1	0	0	0	0	0	0	0	1	5580	871	31	1		1	FAM20B	1	179013003	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	89399558	179013003	70237618	3	2369										
USH2A	0	genome.wustl.edu	37	chr1	216371889	216371889	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gtggtttctttagtagatctCagtcttctcatgtatagttc	8	7	4	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	216371889	216371889	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.3849	p.L1283	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	103	0	0	215	30	12.24	-	-	-	T	216371889	C	T	216371889	2	4	47	1	0	0	0	0	0	0	0	1	17133	813	29	2		2	USH2A	1	216371889	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	37358886	216371889	32878732	4	2370										
WDR26	0	genome.wustl.edu	37	chr1	224592213	224592213	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tcatctggactccatgcaatAtaagaaacgccataagcatg	7	10	2	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	224592213	224592213	A	G	SNP	WDR26	ENST00000480676	human	ensembl	69_37n	-1	known	missense	c.118	p.Y40H	0.899	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR26	HGNC	ENSG00000162923	148	0	0	185	62	25.1	-	-	-	G	224592213	A	G	224592213	3	3	47	1	0	0	0	0	1	0	0	0	17380	456	16	5	795	5	WDR26	1	224592213	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	8220324	224592213	24658408	5	2371										
ITPKB	0	genome.wustl.edu	37	chr1	226924234	226924234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gtggcccagtggatgtaactCtcgctgccacttccgtggcc	12	14	1	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	226924234	226924234	C	G	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.926	p.R309T	0.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	23	0	0	19	4	17.39	-	-	-	G	226924234	C	G	226924234	3	3	47	1	0	0	0	0	1	0	0	0	7972	913	32	2	1942	2	ITPKB	1	226924234	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	2332021	226924234	22326387	6	2372										
C1orf101	0	genome.wustl.edu	37	chr1	244735979	244735979	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tctatccagaaaacactggtCtgtatgttattgtggaatct	8	7	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	1	244735979	244735979	C	G	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1855	p.L619V	0.078	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	26	0	0	65	13	16.67	-	-	-	G	244735979	C	G	244735979	3	3	47	1	0	0	0	0	1	0	0	0	1995	912	32	2	1897	2	C1orf101	1	244735979	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	17811745	244735979	4514642	7	2373										
OTOF	0	genome.wustl.edu	37	chr2	26690299	26690299	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ccctggccagagccagagctCtgagttttcttcttcttctc	8	14	5	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	2	26690299	26690299	C	G	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.4161	p.Q1387H	0.978	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	55	0	0	68	8	10.53	-	-	-	G	26690299	C	G	26690299	3	3	47	1	0	0	0	0	1	0	0	0	11376	912	32	2	2069	2	OTOF	2	26690299	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		26690299	216509074	8	2374										
RANBP2	0	genome.wustl.edu	37	chr2	109371670	109371670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	cctcgatgggcagaagatcaGaattctttactgaaaatgat	9	7	2	5			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	2	109371670	109371670	G	C	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.2421	p.Q807H	0.990	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	216	0	0	358	81	18.45	-	-	-	C	109371670	G	C	109371670	3	2	47	1	0	0	0	0	1	0	0	0	13111	933	33	2	2487	2	RANBP2	2	109371670	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	82681371	109371670	133827703	9	2375										
ACVR2A	0	genome.wustl.edu	37	chr2	148676122	148676122	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atatttacatgaggatatacCtggcctaaaagatggccaca	8	8	0	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	2	148676122	148676122	C	G	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.923	p.P308R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	33	0	0	40	13	24.53	-	-	-	G	148676122	C	G	148676122	3	3	47	1	0	0	0	0	1	0	0	0	223	681	24	4	949	4	ACVR2A	2	148676122	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	39304452	148676122	94523251	10	2376										
NR4A2	0	genome.wustl.edu	37	chr2	157184493	157184493	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tcggtttcgagggcaaacgaCctctccggccttttaaactg	10	12	1	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	2	157184493	157184493	C	A	SNP	NR4A2	ENST00000539077	human	ensembl	69_37n	-1	known	missense	c.1061	p.G354V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234	33	0	0	72	12	14.29	-	-	-	A	157184493	C	A	157184493	3	1	47	1	0	0	0	0	1	0	0	0	10706	507	18	4	784	4	NR4A2	2	157184493	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	8508371	157184493	86014880	11	2377										
FAM171B	0	genome.wustl.edu	37	chr2	187611928	187611928	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	acagttctacaacagtttttGaaagtggacaattttctgca	7	7	2	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	2	187611928	187611928	G	A	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	silent	c.675	p.L225	0.990	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	71	0	0	95	18	15.93	-	-	-	A	187611928	G	A	187611928	2	1	47	1	0	0	0	0	0	0	0	1	5531	1281	45	2		2	FAM171B	2	187611928	Silent	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	30427435	187611928	55587445	12	2378										
DOCK3	0	genome.wustl.edu	37	chr3	50816143	50816143	+	Frame_Shift_Del	DEL	G	G	-													0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ggatctgtccctcaagggttGgtcttagaaataggagaaac							TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	50816143	50816143	G	-	DEL	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	frame_shift_del	c.75	p.V26fs	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	314	0	0	237	86	26.22	-	-	-	-	50816143	G	-	50816143	7	5	47	1	0	1	0	1	0	0	0	0	4723	1339	47	0	81	0	DOCK3	3	50816143	Frame_Shift_Del	DEL	G	TCGA-A2-A0EQ-01A-11W-A050-09		50816143	147206287	13	2379										
BAP1	0	genome.wustl.edu	37	chr3	52442600	52442600	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ctcttcgatccatttgaacaGgaagataaatccatatacag	6	9	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	52442600	52442600	G	C	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.145	p.L49V	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	24	0	0	10	6	37.5	-	-	-	C	52442600	G	C	52442600	3	2	47	1	0	0	0	0	1	0	0	0	1315	991	35	4	2100	4	BAP1	3	52442600	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	1626457	52442600	145579830	14	2380										
WDR52	0	genome.wustl.edu	37	chr3	113049481	113049481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	taaggtctctaagagagagaAtgcacttgttcatgtgcctt	10	7	2	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	113049481	113049481	A	G	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.3650	p.I1217T	0.991	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	68	0	0	111	19	14.5	-	-	-	G	113049481	A	G	113049481	3	3	47	1	0	0	0	0	1	0	0	0	17401	101	4	5	1954	5	WDR52	3	113049481	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	60606881	113049481	84972949	15	2381										
MRPS22	0	genome.wustl.edu	37	chr3	139071564	139071564	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gttcaacaagatactttggtGgaatggtgtggtattttgta	12	3	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	139071564	139071564	G	C	SNP	MRPS22	ENST00000310776	human	ensembl	69_37n	1	known	missense	c.808	p.G270R	1.000	pfam_Ribosomal_S22_mit	pfam_Ribosomal_S22_mit	-	no_errors	MRPS22	HGNC	ENSG00000175110	314	0	0	231	79	25.48	-	-	-	C	139071564	G	C	139071564	3	2	47	1	0	0	0	0	1	0	0	0	9905	1349	47	4	830	4	MRPS22	3	139071564	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	26022083	139071564	58950866	16	2382										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	82	0	0	78	37	32.17	-	-	-	G	178952085	A	G	178952085	3	3	47	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	39880521	178952085	19070345	17	2383										
MUC20	0	genome.wustl.edu	37	chr3	195453371	195453371	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ccaagatcacaacctcagcgAagaccacgatgaagccccca	7	16	2	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	195453371	195453371	A	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.1897	p.K633E	0.002	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	124	0	0	100	25	20	-	-	-	G	195453371	A	G	195453371	3	3	47	1	0	0	0	0	1	0	0	0	10048	247	9	5	1394	5	MUC20	3	195453371	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	16501286	195453371	2569059	18	2384										
MUC4	0	genome.wustl.edu	37	chr3	195508700	195508700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tgctgaggaagtgtcggtgaCaggaagagaggtggcatgac	18	5	0	4			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	3	195508700	195508700	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.9751	p.V3251I	0.007	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	8	0	0	6	5	45.45	-	-	-	T	195508700	C	T	195508700	3	4	47	1	0	0	0	0	1	0	0	0	10050	478	17	4		4	MUC4	3	195508700	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	55329	195508700	2513730	19	2385										
EVC2	0	genome.wustl.edu	37	chr4	5564815	5564815	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gagaatatcatcctctctctGagagggagacatgtcttctt	9	9	5	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	4	5564815	5564815	G	C	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	silent	c.3687	p.L1229	0.120	NULL	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	144	0	0	110	46	29.49	-	-	-	C	5564815	G	C	5564815	2	2	47	1	0	0	0	0	0	0	0	1	5323	1277	45	2		2	EVC2	4	5564815	Silent	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		5564815	185589461	20	2386										
PPP3CA	0	genome.wustl.edu	37	chr4	101982313	101982313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gaggacatttaccagcatctCagtcactaaagagagaaagc	9	9	2	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	4	101982313	101982313	C	G	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.1087	p.E363Q	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	104	0	0	95	39	29.1	-	-	-	G	101982313	C	G	101982313	3	3	47	1	0	0	0	0	1	0	0	0	12474	835	29	2	498	2	PPP3CA	4	101982313	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	96417498	101982313	89171963	21	2387										
FAT4	0	genome.wustl.edu	37	chr4	126238784	126238784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gggggcaatgagcagcgccaCtttgaagtgcaaagcagcaa	14	9	0	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	4	126238784	126238784	C	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.1218	p.H406Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	41	0	0	30	5	14.29	-	-	-	G	126238784	C	G	126238784	3	3	47	1	0	0	0	0	1	0	0	0	5738	564	20	4	1220	4	FAT4	4	126238784	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	24256471	126238784	64915492	22	2388										
ABCE1	0	genome.wustl.edu	37	chr4	146042543	146042544	+	Frame_Shift_Ins	INS	-	-	A													0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aaattagtcccaaatcaactINSgtgagttattattttttata							TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	4	146042543	146042544	-	A	INS	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	frame_shift_ins	c.1263_1264	p.G421fs	0.977:1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	67	0	0	111	13	10.48	-	-	-	A	146042544	-	A	146042543	7	5	47	1	0	1	1	0	0	0	0	0	64	1594	55	0	1309	0	ABCE1	4	146042543	Frame_Shift_Ins	INS	-	TCGA-A2-A0EQ-01A-11W-A050-09	19803759	146042543	45111733	23	2389										
LRRC16A	0	genome.wustl.edu	37	chr6	25471408	25471408	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ctgttacagtccactgatgtCtgtgaacagatcttgagggt	11	8	2	4			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	25471408	25471408	C	T	SNP	LRRC16A	ENST00000377969	human	ensembl	69_37n	1	known	silent	c.219	p.V73	1.000	NULL	NULL	-	no_errors	LRRC16A	HGNC	ENSG00000079691	497	0	0	309	45	12.71	-	-	-	T	25471408	C	T	25471408	2	4	47	1	0	0	0	0	0	0	0	1	9037	900	32	2		2	LRRC16A	6	25471408	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		25471408	145643659	24	2390										
TRIM38	0	genome.wustl.edu	37	chr6	25966837	25966837	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atgacgaacccagtaagcatCaactgtggacacagctactg	9	11	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	25966837	25966837	C	G	SNP	TRIM38	ENST00000349458	human	ensembl	69_37n	1	known	missense	c.87	p.I29M	0.217	smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343	344	0	0	270	51	15.89	-	-	-	G	25966837	C	G	25966837	3	3	47	1	0	0	0	0	1	0	0	0	16608	816	29	2	89	2	TRIM38	6	25966837	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	495429	25966837	145148230	25	2391										
NKAPL	0	genome.wustl.edu	37	chr6	28227456	28227456	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	accatcgtcactgctatgcaGaagaacggcagtcagcggaa	11	11	2	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	28227456	28227456	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	69_37n	1	known	missense	c.307	p.E103K	0.001	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134	22	0	0	59	15	20.27	-	-	-	A	28227456	G	A	28227456	3	1	47	1	0	0	0	0	1	0	0	0	10512	943	33	2	309	2	NKAPL	6	28227456	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	2260619	28227456	142887611	26	2392										
UBR2	0	genome.wustl.edu	37	chr6	42571368	42571368	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aagatgtgatagcaagaactTataacatttttgctattacg	7	5	0	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	42571368	42571368	T	C	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.574	p.Y192H	0.862	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	117	0	0	145	19	11.59	-	-	-	C	42571368	T	C	42571368	3	2	47	1	0	0	0	0	1	0	0	0	16999	1754	61	5	592	5	UBR2	6	42571368	Missense_Mutation	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	14343912	42571368	128543699	27	2393										
EYS	0	genome.wustl.edu	37	chr6	65301291	65301291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	caggaaaaatgggagacatcGaggggctgagcaatctccag	14	8	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	65301291	65301291	G	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.4469	p.S1490L	0.497	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	55	0	0	69	18	20.69	-	-	-	A	65301291	G	A	65301291	3	1	47	1	0	0	0	0	1	0	0	0	5369	1059	37	1	4882	1	EYS	6	65301291	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	22729923	65301291	105813776	28	2394										
RSPH4A	0	genome.wustl.edu	37	chr6	116949275	116949275	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tcactgggcgattggatgctCccatcataagctacccacct	8	14	2	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	116949275	116949275	C	G	SNP	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	missense	c.1405	p.P469A	0.991	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	90	0	0	220	35	13.67	-	-	-	G	116949275	C	G	116949275	3	3	47	1	0	0	0	0	1	0	0	0	13792	855	30	2	1415	2	RSPH4A	6	116949275	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	51647984	116949275	54165792	29	2395										
FNDC1	0	genome.wustl.edu	37	chr6	159644608	159644608	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	catcagcgtccgggttatgtCatctcagtctgtgcttgtgt	11	10	4	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	6	159644608	159644608	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.815	p.S272L	0.102	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	237	0	0	292	102	25.89	-	-	-	T	159644608	C	T	159644608	3	4	47	1	0	0	0	0	1	0	0	0	6014	838	29	2	841	2	FNDC1	6	159644608	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	42695333	159644608	11470459	30	2396										
PKD1L1	0	genome.wustl.edu	37	chr7	47968840	47968840	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ggcagtcaccgccattgcctCagacatgttgtgtagcctca	10	13	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	7	47968840	47968840	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.1021	p.E341K	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	68	0	0	54	21	27.63	-	-	-	T	47968840	C	T	47968840	3	4	47	1	0	0	0	0	1	0	0	0	12038	835	29	2	7732	2	PKD1L1	7	47968840	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		47968840	111169823	31	2397										
ABCA13	0	genome.wustl.edu	37	chr7	48335359	48335359	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gaaagtcttagcaagaatctTtctagcaccttggagagctt	9	8	3	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	7	48335359	48335359	T	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.9018	p.L3006	0.100	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	154	0	0	61	35	36.46	-	-	-	G	48335359	T	G	48335359	2	3	47	1	0	0	0	0	0	0	0	1	31	1828	64	5		5	ABCA13	7	48335359	Silent	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	366519	48335359	110803304	32	2398										
ZNF479	0	genome.wustl.edu	37	chr7	57187675	57187675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tccagtatgaattctcttatGttgcataagggttgaggagc	11	6	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	7	57187675	57187675	G	T	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.1447	p.H483N	0.982	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	34	0	0	73	12	13.95	-	-	-	T	57187675	G	T	57187675	3	4	47	1	0	0	0	0	1	0	0	0	18029	1377	48	4	131	4	ZNF479	7	57187675	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	8852316	57187675	101950988	33	2399										
EMID2	0	genome.wustl.edu	37	chr7	101090994	101090994	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tctgatcagacccacctacaGagtgtcctaccgcacggtga	9	14	2	4			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	7	101090994	101090994	G	C	SNP	EMID2	ENST00000313669	human	ensembl	69_37n	1	known	missense	c.311	p.R104T	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	EMID2	HGNC	ENSG00000160963	104	0	0	68	25	26.88	-	-	-	C	101090994	G	C	101090994	3	2	47	1	0	0	0	0	1	0	0	0	5129	942	33	2	315	2	EMID2	7	101090994	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	43903319	101090994	58047669	34	2400										
COPG2	0	genome.wustl.edu	37	chr7	130347816	130347816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aaaagacttacatcattagaTtgaaacaatcgcgtcattgc	6	8	2	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	7	130347816	130347816	T	G	SNP	COPG2	ENST00000445977	human	ensembl	69_37n	-1	known	missense	c.234	p.Q78H	0.998	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	-	no_errors	COPG2	HGNC	ENSG00000158623	168	0	0	132	20	13.16	-	-	-	G	130347816	T	G	130347816	3	3	47	1	0	0	0	0	1	0	0	0	3762	1490	52	5	1012	5	COPG2	7	130347816	Missense_Mutation	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	29256822	130347816	28790847	35	2401										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24249788	24249788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tctctagcaatagccataaaGcaaacacctgaattaacgct	5	11	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	8	24249788	24249788	G	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	silent	c.102	p.K34	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	65	0	0	57	9	13.64	-	-	-	A	24249788	G	A	24249788	2	1	47	1	0	0	0	0	0	0	0	1	254	962	34	4		4	ADAMDEC1	8	24249788	Silent	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		24249788	122114234	36	2402										
ADCY8	0	genome.wustl.edu	37	chr8	131922104	131922104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	catcgtgttttgtccttgacCgcacatacctgttgacatag	8	11	0	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	8	131922104	131922104	C	A	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.1490	p.R497L	0.999	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	169	0	0	198	63	24.14	-	-	-	A	131922104	C	A	131922104	3	1	47	1	0	0	0	0	1	0	0	0	300	652	23	3	2317	3	ADCY8	8	131922104	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	107672316	131922104	14441918	37	2403										
BAI1	0	genome.wustl.edu	37	chr8	143558834	143558835	+	Frame_Shift_Ins	INS	-	-	C													0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atcgcacgcgcacctgcaggINScccccccagtttgggggcaa							TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	8	143558834	143558835	-	C	INS	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	frame_shift_ins	c.1311_1312	p.Q439fs	0.955:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	11	0	0	52	19	26.76	-	-	-	C	143558835	-	C	143558834	7	5	47	1	0	1	1	0	0	0	0	0	1302	1194	42	0	1329	0	BAI1	8	143558834	Frame_Shift_Ins	INS	-	TCGA-A2-A0EQ-01A-11W-A050-09	11636730	143558834	2805188	38	2404										
MPDZ	0	genome.wustl.edu	37	chr9	13168444	13168444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tacactgatggtagactcttCattaatggacaagatgcagt	9	7	2	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	9	13168444	13168444	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.3175	p.E1059K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	72	0	0	58	10	14.71	-	-	-	T	13168444	C	T	13168444	3	4	47	1	0	0	0	0	1	0	0	0	9794	835	29	2	3050	2	MPDZ	9	13168444	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		13168444	128044987	39	2405										
CHRNA10	0	genome.wustl.edu	37	chr11	3687755	3687755	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	taaggatggtgagtgctgttGagaatgtgaccatggtcata	14	4	1	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	3687755	3687755	G	C	SNP	CHRNA10	ENST00000250699	human	ensembl	69_37n	-1	known	nonsense	c.935	p.S312*	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749	131	0	0	69	13	15.85	-	-	-	C	3687755	G	C	3687755	4	2	47	1	0	0	0	0	0	1	0	0	3411	1294	45	2	421	2	CHRNA10	11	3687755	Nonsense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		3687755	131318761	40	2406										
TRIM68	0	genome.wustl.edu	37	chr11	4626420	4626420	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tcctctttgcagaacatcttCagcttttccccatggcgctc	6	15	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	4626420	4626420	C	T	SNP	TRIM68	ENST00000300747	human	ensembl	69_37n	-1	known	silent	c.315	p.L105	0.001	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM68	HGNC	ENSG00000167333	95	0	0	86	15	14.85	-	-	-	T	4626420	C	T	4626420	2	4	47	1	0	0	0	0	0	0	0	1	16637	813	29	2		2	TRIM68	11	4626420	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	938665	4626420	130380096	41	2407										
E2F8	0	genome.wustl.edu	37	chr11	19251216	19251216	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tgccttctcagtggtggcatCtgtggagtcttttgagccag	13	9	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	19251216	19251216	C	T	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	missense	c.1678	p.D560N	0.121	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	81	0	0	81	11	11.96	-	-	-	T	19251216	C	T	19251216	3	4	47	1	0	0	0	0	1	0	0	0	4908	913	32	2	941	2	E2F8	11	19251216	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	14624796	19251216	115755300	42	2408										
PAMR1	0	genome.wustl.edu	37	chr11	35454330	35454330	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tcccgactggcagcgaggcaGatgggctggactcgggtgct	17	11	0	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	35454330	35454330	G	C	SNP	PAMR1	ENST00000278360	human	ensembl	69_37n	-1	known	missense	c.1788	p.I596M	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_EGF-like,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PAMR1	HGNC	ENSG00000149090	135	0	0	147	21	12.5	-	-	-	C	35454330	G	C	35454330	3	2	47	1	0	0	0	0	1	0	0	0	11486	932	33	2	429	2	PAMR1	11	35454330	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	16203114	35454330	99552186	43	2409										
PITPNM1	0	genome.wustl.edu	37	chr11	67266143	67266143	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	cgccacgtggcccaaggcctCagggaagtggatgcgggtga	17	11	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	67266143	67266143	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.1408	p.E470K	0.996	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	9	0	0	13	8	38.1	-	-	-	T	67266143	C	T	67266143	3	4	47	1	0	0	0	0	1	0	0	0	12024	835	29	2	2386	2	PITPNM1	11	67266143	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	31811813	67266143	67740373	44	2410										
OR6X1	0	genome.wustl.edu	37	chr11	123624853	123624853	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tggggtggtgaaggggattgCagatggtgaggtagcggtca	21	3	1	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	11	123624853	123624853	C	A	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.374	p.C125F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	443	0	0	279	72	20.51	-	-	-	A	123624853	C	A	123624853	3	1	47	1	0	0	0	0	1	0	0	0	11285	710	25	4	566	4	OR6X1	11	123624853	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	56358710	123624853	11381663	45	2411										
GUCY2C	0	genome.wustl.edu	37	chr12	14804406	14804406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ggtatcaagtttcactgtgcCgtagaacttggtcaggttgt	12	7	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	12	14804406	14804406	C	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.1645	p.G549C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	103	1	0.96	105	22	17.19	-	-	-	A	14804406	C	A	14804406	3	1	47	1	0	0	0	0	1	0	0	0	6947	652	23	3	1628	3	GUCY2C	12	14804406	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		14804406	119047489	46	2412										
CELA1	0	genome.wustl.edu	37	chr12	51736377	51736377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	acccggcagccacgttatcgCtgttccagtatggatgcacc	10	14	0	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	12	51736377	51736377	C	T	SNP	CELA1	ENST00000293636	human	ensembl	69_37n	-1	known	missense	c.308	p.S103N	0.961	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA1	HGNC	ENSG00000139610	121	0	0	79	18	18.56	-	-	-	T	51736377	C	T	51736377	3	4	47	1	0	0	0	0	1	0	0	0	3239	797	28	4	488	4	CELA1	12	51736377	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	36931971	51736377	82115518	47	2413										
GPC5	0	genome.wustl.edu	37	chr13	92345967	92345967	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atgcgaggctgcctggcgcaCatggcggagcttaatccaca	13	12	0	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	13	92345967	92345967	C	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.852	p.H284Q	0.684	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	73	0	0	79	13	14.13	-	-	-	A	92345967	C	A	92345967	3	1	47	1	0	0	0	0	1	0	0	0	6651	477	17	4	862	4	GPC5	13	92345967	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		92345967	22823911	48	2414										
PSMA3	0	genome.wustl.edu	37	chr14	58727739	58727739	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	acccatcaggtgtttcatacGtgagtaattttgaatcattt	7	7	3	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	14	58727739	58727739	G	A	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	1	known	splice_site	c.477+1	e6+1	1.000	-	-	-	no_errors	PSMA3	HGNC	ENSG00000100567	323	1	0.31	234	40	14.6	-	-	-	A	58727739	G	A	58727739	5	1	47	1	0	0	0	0	0	0	1	0	12748	1159	40	1	500	1	PSMA3	14	58727739	Splice_Site	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		58727739	48621801	49	2415										
TTLL5	0	genome.wustl.edu	37	chr14	76147917	76147917	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atttgtcttataagattgtaCgaacggacagtcgcctagta	9	7	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	14	76147917	76147917	C	G	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.211	p.R71G	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	144	0	0	136	17	11.04	-	-	-	G	76147917	C	G	76147917	3	3	47	1	0	0	0	0	1	0	0	0	16827	528	19	3	221	3	TTLL5	14	76147917	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	17420178	76147917	31201623	50	2416										
MAGEL2	0	genome.wustl.edu	37	chr15	23889829	23889829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	caacgcatttgccctctcatCcaagggagacaagggctgtg	11	12	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	15	23889829	23889829	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.1252	p.D418N	0.267	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	30	0	0	22	4	15.38	-	-	-	T	23889829	C	T	23889829	3	4	47	1	0	0	0	0	1	0	0	0	9260	855	30	2	692	2	MAGEL2	15	23889829	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		23889829	78641563	51	2417										
RYR3	0	genome.wustl.edu	37	chr15	34156357	34156357	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aggttctttctgatgtatttGattaataaagatgaaacaga	8	3	2	5			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	15	34156357	34156357	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.14484	p.L4828F	0.912	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	115	0	0	90	20	18.18	-	-	-	C	34156357	G	C	34156357	3	2	47	1	0	0	0	0	1	0	0	0	13856	1281	45	2	14894	2	RYR3	15	34156357	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	10266528	34156357	68375035	52	2418										
FRMD5	0	genome.wustl.edu	37	chr15	44166157	44166157	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	cctgaggggacaaaagtattGatagtggaattgttcaaact	11	5	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	15	44166157	44166157	G	C	SNP	FRMD5	ENST00000417257	human	ensembl	69_37n	-1	known	missense	c.1639	p.Q547E	1.000	NULL	pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD5	HGNC	ENSG00000171877	170	0	0	151	18	10.65	-	-	-	C	44166157	G	C	44166157	3	2	47	1	0	0	0	0	1	0	0	0	6102	1299	45	2	77	2	FRMD5	15	44166157	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	10009800	44166157	58365235	53	2419										
CELF6	0	genome.wustl.edu	37	chr15	72608235	72608235	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	cactctgggccttgagagcaGagtcccgggcgcagtaggtg	16	11	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	15	72608235	72608235	G	C	SNP	CELF6	ENST00000569547	human	ensembl	69_37n	-1	known	missense	c.296	p.S99C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF6	HGNC	ENSG00000140488	75	0	0	107	15	12.3	-	-	-	C	72608235	G	C	72608235	3	2	47	1	0	0	0	0	1	0	0	0	3249	942	33	2	1193	2	CELF6	15	72608235	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	28442078	72608235	29923157	54	2420										
MCTP2	0	genome.wustl.edu	37	chr15	94945238	94945238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atccacattaagaagtacaaTagcattcgcggtaagcttcc	7	10	0	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	15	94945238	94945238	T	C	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	missense	c.2075	p.I692T	0.677	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	133	0	0	122	17	12.23	-	-	-	C	94945238	T	C	94945238	3	2	47	1	0	0	0	0	1	0	0	0	9472	1406	49	5	2137	5	MCTP2	15	94945238	Missense_Mutation	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	22337003	94945238	7586154	55	2421										
GNPTG	0	genome.wustl.edu	37	chr16	1412632	1412632	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ggccatgagaagttgctgagGacactttttgaggatgctgg	15	6	0	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	16	1412632	1412632	G	A	SNP	GNPTG	ENST00000204679	human	ensembl	69_37n	1	known	silent	c.630	p.R210	0.241	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581	91	0	0	57	41	41.84	-	-	-	A	1412632	G	A	1412632	2	1	47	1	0	0	0	0	0	0	0	1	6598	1165	41	2		2	GNPTG	16	1412632	Silent	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		1412632	88942121	56	2422										
TP53	0	genome.wustl.edu	37	chr17	7578443	7578445	+	In_Frame_Del	DEL	AGA	AGA	-													0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	catgtgctgtgactgcttgtAgatggccatggcgcggacgc							TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	17	7578443	7578445	AGA	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.487_485	p.IY162in_frame_delN	1.000:0.976:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	202	0	0	159	50	22.42	-	-	-	-	7578445	AGA	-	7578443	7	5	47	1	0	1	0	1	0	0	0	0	16477	420	15	0	811	0	TP53	17	7578443	In_Frame_Del	DEL	AGA	TCGA-A2-A0EQ-01A-11W-A050-09		7578443	73616767	57	2423										
METTL4	0	genome.wustl.edu	37	chr18	2567036	2567036	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gagtcagaagcaataaatgcAgcacagactccagaggagga	12	8	1	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	18	2567036	2567036	A	G	SNP	METTL4	ENST00000574538	human	ensembl	69_37n	-1	known	silent	c.180	p.A60	0.004	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL4	HGNC	ENSG00000101574	73	0	0	88	14	13.73	-	-	-	G	2567036	A	G	2567036	2	3	47	1	0	0	0	0	0	0	0	1	9573	175	7	5		5	METTL4	18	2567036	Silent	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09		2567036	75510212	58	2424										
ARHGAP28	0	genome.wustl.edu	37	chr18	6890538	6890538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	caggaggaagaccctcgagcGggaggtaagacagcaaatga	15	8	0	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	18	6890538	6890538	G	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	missense	c.1844	p.R615Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	212	0	0	116	19	14.07	-	-	-	A	6890538	G	A	6890538	3	1	47	1	0	0	0	0	1	0	0	0	879	1116	39	1	1413	1	ARHGAP28	18	6890538	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	4323502	6890538	71186710	59	2425										
LIPG	0	genome.wustl.edu	37	chr18	47110100	47110100	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	cgcaaccccggacgggagctGaatatcaggcgcatccgggt	14	13	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	18	47110100	47110100	G	A	SNP	LIPG	ENST00000261292	human	ensembl	69_37n	1	known	silent	c.1332	p.L444	0.026	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep,pfscan_LipOase_LH2	-	no_errors	LIPG	HGNC	ENSG00000101670	87	0	0	156	39	20	-	-	-	A	47110100	G	A	47110100	2	1	47	1	0	0	0	0	0	0	0	1	8879	1277	45	2		2	LIPG	18	47110100	Silent	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	40219562	47110100	30967148	60	2426										
WDR7	0	genome.wustl.edu	37	chr18	54385213	54385213	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aggcaagagtacagcactgcAtctgctctgtagccagtgac	11	11	2	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	18	54385213	54385213	A	G	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	missense	c.1597	p.I533V	0.993	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	74	0	0	170	32	15.84	-	-	-	G	54385213	A	G	54385213	3	3	47	1	0	0	0	0	1	0	0	0	17417	217	8	5	1643	5	WDR7	18	54385213	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	7275113	54385213	23692035	61	2427										
DAPK3	0	genome.wustl.edu	37	chr19	3964285	3964285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atgttcttgaactcgttcccCgcctcgatcttgtgcgcgat	9	13	2	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	19	3964285	3964285	C	T	SNP	DAPK3	ENST00000301264	human	ensembl	69_37n	-1	known	silent	c.510	p.A170	0.008	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK3	HGNC	ENSG00000167657	128	1	0.78	88	16	15.38	-	-	-	T	3964285	C	T	3964285	2	4	47	1	0	0	0	0	0	0	0	1	4269	639	23	1		1	DAPK3	19	3964285	Silent	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09		3964285	55164698	62	2428										
SMARCA4	0	genome.wustl.edu	37	chr19	11097047	11097047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	accagaaccagctgcaccagCtcagagctcagatcatggcc	9	15	3	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	19	11097047	11097047	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	missense	c.538	p.L180F	1.000	pfam_Gln-Leu-Gln_QLQ,smart_Gln-Leu-Gln_QLQ	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	30	0	0	24	6	20	-	-	-	T	11097047	C	T	11097047	3	4	47	1	0	0	0	0	1	0	0	0	14859	797	28	4	548	4	SMARCA4	19	11097047	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	7132762	11097047	48031936	63	2429										
PLD3	0	genome.wustl.edu	37	chr19	40880504	40880504	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gtcatgaactacctgcccacTctggagttctcccaccctca	6	17	4	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	19	40880504	40880504	T	G	SNP	PLD3	ENST00000356508	human	ensembl	69_37n	1	known	silent	c.996	p.T332	0.998	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223	61	0	0	40	9	18.37	-	-	-	G	40880504	T	G	40880504	2	3	47	1	0	0	0	0	0	0	0	1	12121	1538	54	5		5	PLD3	19	40880504	Silent	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	29783457	40880504	18248479	64	2430										
C19orf54	0	genome.wustl.edu	37	chr19	41248631	41248631	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gcccggcagctcagggtcctCagtgtagccgagactgggca	15	13	2	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	19	41248631	41248631	C	T	SNP	C19orf54	ENST00000378313	human	ensembl	69_37n	-1	known	missense	c.763	p.E255K	0.985	NULL	NULL	-	no_errors	C19orf54	HGNC	ENSG00000188493	61	0	0	55	19	25.68	-	-	-	T	41248631	C	T	41248631	3	4	47	1	0	0	0	0	1	0	0	0	1954	835	29	2	296	2	C19orf54	19	41248631	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	368127	41248631	17880352	65	2431										
SCAF1	0	genome.wustl.edu	37	chr19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C													0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tctggggggctgcggttcgaINSccccccccacccccaccggg							TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	19	50158041	50158042	-	C	INS	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	frame_shift_ins	c.3532_3533	p.T1181fs	0.839:0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	37	0	0	40	7	14.89	-	-	-	C	50158042	-	C	50158041	7	5	47	1	0	1	1	0	0	0	0	0	13955	275	10	0	3562	0	SCAF1	19	50158041	Frame_Shift_Ins	INS	-	TCGA-A2-A0EQ-01A-11W-A050-09	8909410	50158041	8970942	66	2432										
EPB41L1	0	genome.wustl.edu	37	chr20	34763629	34763629	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	atgcctcggagtatgagtgtGaggtggaggtaggggagcac	19	5	0	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	20	34763629	34763629	G	A	SNP	EPB41L1	ENST00000338074	human	ensembl	69_37n	1	known	missense	c.334	p.E112K	1.000	pfam_FERM_N,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Ez/rad/moesin	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L1	HGNC	ENSG00000088367	222	0	0	148	46	23.71	-	-	-	A	34763629	G	A	34763629	3	1	47	1	0	0	0	0	1	0	0	0	5189	1291	45	2	340	2	EPB41L1	20	34763629	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		34763629	28261891	67	2433										
RALGAPB	0	genome.wustl.edu	37	chr20	37182575	37182575	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	attgcttatgaaatacacctTgagcaacagagtgaggagga	11	6	0	4			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	20	37182575	37182575	T	G	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	silent	c.3228	p.L1076	0.985	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	176	0	0	160	40	19.9	-	-	-	G	37182575	T	G	37182575	2	3	47	1	0	0	0	0	0	0	0	1	13098	1799	63	5		5	RALGAPB	20	37182575	Silent	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	2418946	37182575	25842945	68	2434										
ZNF217	0	genome.wustl.edu	37	chr20	52192934	52192934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gagggctctgcttccccttcGcagatggcagggatttggac	14	11	1	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	20	52192934	52192934	G	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.2369	p.A790V	0.937	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	57	0	0	82	16	16.33	-	-	-	A	52192934	G	A	52192934	3	1	47	1	0	0	0	0	1	0	0	0	17868	1087	38	1	785	1	ZNF217	20	52192934	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	15010359	52192934	10832586	69	2435										
DYRK1A	0	genome.wustl.edu	37	chr21	38850492	38850492	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gtctatttaaggtgatgcctGatattgtcatgttacagagg	11	5	2	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	21	38850492	38850492	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.217	p.D73H	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	116	0	0	173	43	19.91	-	-	-	C	38850492	G	C	38850492	3	2	47	1	0	0	0	0	1	0	0	0	4889	1290	45	2	227	2	DYRK1A	21	38850492	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		38850492	9279403	70	2436										
DSCAM	0	genome.wustl.edu	37	chr21	41719830	41719830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	aggaaacttggctacccacgCtgcttttaaccttcctggga	9	12	0	0			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	21	41719830	41719830	C	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.977	p.S326I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	76	0	0	195	32	14.04	-	-	-	A	41719830	C	A	41719830	3	1	47	1	0	0	0	0	1	0	0	0	4803	797	28	4	5173	4	DSCAM	21	41719830	Missense_Mutation	SNP	C	TCGA-A2-A0EQ-01A-11W-A050-09	2869338	41719830	6410065	71	2437										
SLC25A18	0	genome.wustl.edu	37	chr22	18072980	18072980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	ttttattgggattggagagcGcatcttaaagtgttttgact	11	4	1	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	22	18072980	18072980	G	A	SNP	SLC25A18	ENST00000327451	human	ensembl	69_37n	1	known	missense	c.926	p.R309H	0.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902	130	0	0	151	21	12.14	-	-	-	A	18072980	G	A	18072980	3	1	47	1	0	0	0	0	1	0	0	0	14569	1087	38	1	960	1	SLC25A18	22	18072980	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		18072980	33231586	72	2438										
DNAJB7	0	genome.wustl.edu	37	chr22	41257265	41257265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gagaatttggtgaatagttgTtgaatgactgtgttctccag	12	4	1	4			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	22	41257265	41257265	T	C	SNP	DNAJB7	ENST00000307221	human	ensembl	69_37n	-1	known	missense	c.734	p.N245S	0.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ConA-like_lec_gl,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB7	HGNC	ENSG00000172404	211	0	0	164	24	12.77	-	-	-	C	41257265	T	C	41257265	3	2	47	1	0	0	0	0	1	0	0	0	4660	1725	60	5	199	5	DNAJB7	22	41257265	Missense_Mutation	SNP	T	TCGA-A2-A0EQ-01A-11W-A050-09	23184285	41257265	10047301	73	2439										
SMC1B	0	genome.wustl.edu	37	chr22	45782877	45782877	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gagtctttatgacatcaatcAccattttacagcctttaagc	5	10	3	1			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	22	45782877	45782877	A	G	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	missense	c.1781	p.V594A	1.000	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	114	0	0	104	38	26.76	-	-	-	G	45782877	A	G	45782877	3	3	47	1	0	0	0	0	1	0	0	0	14871	159	6	5	1986	5	SMC1B	22	45782877	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	4525612	45782877	5521689	74	2440										
ZNF674	0	genome.wustl.edu	37	chrX	46359485	46359485	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gtatgaattctctgatgtttGatgagagttgacttcctact	9	6	1	5			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	X	46359485	46359485	G	C	SNP	ZNF674	ENST00000523374	human	ensembl	69_37n	-1	known	missense	c.1539	p.I513M	0.027	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	209	0	0	190	62	24.51	-	-	-	C	46359485	G	C	46359485	3	2	47	1	0	0	0	0	1	0	0	0	18177	1280	45	2	210	2	ZNF674	23	46359485	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09		46359485	108911075	75	2441										
ZNF674	0	genome.wustl.edu	37	chrX	46359952	46359952	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	tttcccatgttcactgcactGaggtttctcacttgtgtgaa	8	10	2	2			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	X	46359952	46359952	G	C	SNP	ZNF674	ENST00000523374	human	ensembl	69_37n	-1	known	missense	c.1072	p.Q358E	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	137	0	0	106	42	28.38	-	-	-	C	46359952	G	C	46359952	3	2	47	1	0	0	0	0	1	0	0	0	18177	1299	45	2	677	2	ZNF674	23	46359952	Missense_Mutation	SNP	G	TCGA-A2-A0EQ-01A-11W-A050-09	467	46359952	108910608	76	2442										
STAG2	0	genome.wustl.edu	37	chrX	123199793	123199793	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.38961038961039	30	1.00618773972518e-09	3.408	4.19826086956522	2.73481481481481	0.43891101679611	1	21	gaagaggatcactgcttttcAtaagtaagttgaattttgaa	9	4	2	3			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c449ea9-c3ff-4726-8566-5933e2b7056d	282ea476-ac8e-4aa3-ac9e-49fced7a4eb2	X	123199793	123199793	A	G	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.2093	p.H698R	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	139	0	0	91	29	24.17	-	-	-	G	123199793	A	G	123199793	3	3	47	1	0	0	0	0	1	0	0	0	15334	217	8	5	2167	5	STAG2	23	123199793	Missense_Mutation	SNP	A	TCGA-A2-A0EQ-01A-11W-A050-09	76839841	123199793	32070767	77	2443										
NPHP4	0	genome.wustl.edu	37	chr1	5987774	5987774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tggggccactgacaggctccGtgggtgcatccaggtgttct	15	11	1	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	1	5987774	5987774	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1376	p.T459M	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	85	0	0	79	40	33.06	-	-	-	A	5987774	G	A	5987774	3	1	48	1	0	0	0	0	1	0	0	0	10653	1145	40	1	2984	1	NPHP4	1	5987774	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		5987774	243262847	1	2444										
TTC7A	0	genome.wustl.edu	37	chr2	47278894	47278894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	ttgctctgcaggctcccggcGggcttcgtccatcgccgcct	12	17	1	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	47278894	47278894	G	A	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	1	known	missense	c.2027	p.R676Q	0.024	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	22	0	0	3	6	66.67	-	-	-	A	47278894	G	A	47278894	3	1	48	1	0	0	0	0	1	0	0	0	16809	1116	39	1	2097	1	TTC7A	2	47278894	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		47278894	195920479	2	2445										
STEAP3	0	genome.wustl.edu	37	chr2	120012348	120012348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	gggagtgctggccctcggcaCgttgtccctgctggccgtga	16	13	0	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	120012348	120012348	C	T	SNP	STEAP3	ENST00000393110	human	ensembl	69_37n	1	known	missense	c.1139	p.T380M	0.905	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP3	HGNC	ENSG00000115107	128	0	0	93	50	34.97	-	-	-	T	120012348	C	T	120012348	3	4	48	1	0	0	0	0	1	0	0	0	15370	536	19	1	1153	1	STEAP3	2	120012348	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09	72733454	120012348	123187025	3	2446										
YSK4	0	genome.wustl.edu	37	chr2	135745540	135745540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	agttttcctccttctccaggCattgcctgtgatggttagtc	9	11	1	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	135745540	135745540	C	T	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.902	p.C301Y	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	96	0	0	97	53	35.33	-	-	-	T	135745540	C	T	135745540	3	4	48	1	0	0	0	0	1	0	0	0	17592	710	25	4	3100	4	YSK4	2	135745540	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09	15733192	135745540	107453833	4	2447										
NCKAP1	0	genome.wustl.edu	37	chr2	183848015	183848015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	taataattaaatgaattaccTtgggacctagcaatccaggt	7	7	0	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	183848015	183848015	T	C	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.1118	p.K373R	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	104	0	0	115	62	35.03	-	-	-	C	183848015	T	C	183848015	3	2	48	1	0	0	0	0	1	0	0	0	10293	1623	56	5	2370	5	NCKAP1	2	183848015	Missense_Mutation	SNP	T	TCGA-A2-A0ER-01A-21W-A050-09	48102475	183848015	59351358	5	2448										
SLC11A1	0	genome.wustl.edu	37	chr2	219249939	219249939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	gactggctgcacgtctgggcGtggtgacaggcaaggacttg	17	9	1	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	219249939	219249939	G	A	SNP	SLC11A1	ENST00000233202	human	ensembl	69_37n	1	known	missense	c.343	p.V115M	1.000	pfam_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	pfam_Nat-R-assoc-macro_Nramp,prints_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	-	no_errors	SLC11A1	HGNC	ENSG00000018280	86	0	0	90	24	21.05	-	-	-	A	219249939	G	A	219249939	3	1	48	1	0	0	0	0	1	0	0	0	14469	1145	40	1	357	1	SLC11A1	2	219249939	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09	35401924	219249939	23949434	6	2449										
SRGAP3	0	genome.wustl.edu	37	chr3	9032490	9032490	+	Frame_Shift_Del	DEL	G	G	-													0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tcgcccccgcttcggcgtctGgggatggctgctccatcaga							TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	9032490	9032490	G	-	DEL	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	frame_shift_del	c.2592	p.R865fs	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	8	0	0	11	5	31.25	-	-	-	-	9032490	G	-	9032490	7	5	48	1	0	1	0	1	0	0	0	0	15238	1335	47	0	715	0	SRGAP3	3	9032490	Frame_Shift_Del	DEL	G	TCGA-A2-A0ER-01A-21W-A050-09		9032490	188989940	7	2450										
CELSR3	0	genome.wustl.edu	37	chr3	48699376	48699377	+	Frame_Shift_Ins	INS	-	-	G													0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	ccctggaagacagttccgccINSggggggctgtcctttctgct							TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	48699376	48699377	-	G	INS	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	frame_shift_ins	c.692_691	p.R231fs	0.100:0.055	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	17	0	0	18	2	10	-	-	-	G	48699377	-	G	48699376	7	5	48	1	0	1	1	0	0	0	0	0	3252	652	23	0	9386	0	CELSR3	3	48699376	Frame_Shift_Ins	INS	-	TCGA-A2-A0ER-01A-21W-A050-09	39666886	48699376	149323054	8	2451										
CADPS	0	genome.wustl.edu	37	chr3	62385241	62385241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	agtccaggaccccttgcaatCggaaatctctgtaggttttc	9	11	1	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	62385241	62385241	C	T	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3902	p.R1301Q	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	115	0	0	126	65	34.03	-	-	-	T	62385241	C	T	62385241	3	4	48	1	0	0	0	0	1	0	0	0	2595	884	31	1	163	1	CADPS	3	62385241	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09	13685865	62385241	135637189	9	2452										
ZBTB11	0	genome.wustl.edu	37	chr3	101390741	101390742	+	Frame_Shift_Ins	INS	-	-	G													0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	aataagcagtcttagtggttINStgagaaaaataagtcaccaa							TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	101390741	101390742	-	G	INS	ZBTB11	ENST00000461821	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.627_626	p.Q209fs	0.001:0.002	NULL	NULL	-	no_errors	ZBTB11	HGNC	ENSG00000066422	31	0	0	55	8	12.7	-	-	-	G	101390742	-	G	101390741	7	5	48	1	0	1	1	0	0	0	0	0	17620	1856	64	0		0	ZBTB11	3	101390741	Frame_Shift_Ins	INS	-	TCGA-A2-A0ER-01A-21W-A050-09	39005500	101390741	96631689	10	2453										
AADAT	0	genome.wustl.edu	37	chr4	170991750	170991750	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tcacttaccttgttaaactgGagaaaatagtaaggatcatc	7	7	2	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	4	170991750	170991750	G	A	SNP	AADAT	ENST00000509167	human	ensembl	69_37n	-1	known	silent	c.720	p.L240	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AADAT	HGNC	ENSG00000109576	79	0	0	97	41	29.71	-	-	-	A	170991750	G	A	170991750	2	1	48	1	0	0	0	0	0	0	0	1	14	1161	41	2		2	AADAT	4	170991750	Silent	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		170991750	20162526	11	2454										
SLC36A3	0	genome.wustl.edu	37	chr5	150682787	150682787	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	aagggcggtgcggccacttaCgatagtccagcttctccagc	12	13	1	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	5	150682787	150682787	C	A	SNP	SLC36A3	ENST00000377713	human	ensembl	69_37n	-1	known	splice_site	c.128+1	e1+1	0.851	-	-	-	no_errors	SLC36A3	HGNC	ENSG00000186334	55	0	0	51	30	36.59	-	-	-	A	150682787	C	A	150682787	5	1	48	1	0	0	0	0	0	0	1	0	14684	550	19	3	1450	3	SLC36A3	5	150682787	Splice_Site	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09		150682787	30232473	12	2455										
TBC1D9B	0	genome.wustl.edu	37	chr5	179290808	179290809	+	Frame_Shift_Ins	INS	-	-	C													0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	agccctgtccctcgccgctgINScccccctccaccaccacctg							TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	5	179290808	179290809	-	C	INS	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3393_3392	p.S1132fs	0.007:0.033	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	20	0	0	15	2	11.76	-	-	-	C	179290809	-	C	179290808	7	5	48	1	0	1	1	0	0	0	0	0	15723	1306	46	0	363	0	TBC1D9B	5	179290808	Frame_Shift_Ins	INS	-	TCGA-A2-A0ER-01A-21W-A050-09	28608021	179290808	1624452	13	2456										
SLC17A4	0	genome.wustl.edu	37	chr6	25769214	25769214	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	catgcccttttcctctcaggTttttgttcagtccgacatgg	8	12	2	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	6	25769214	25769214	T	C	SNP	SLC17A4	ENST00000377905	human	ensembl	69_37n	1	known	silent	c.93	p.G31	0.058	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039	83	0	0	132	21	13.73	-	-	-	C	25769214	T	C	25769214	2	2	48	1	0	0	0	0	0	0	0	1	14508	1739	60	5		5	SLC17A4	6	25769214	Silent	SNP	T	TCGA-A2-A0ER-01A-21W-A050-09		25769214	145345853	14	2457										
PMS2	0	genome.wustl.edu	37	chr7	6013049	6013049	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	gtcagttctgagaaatgacaCccaggttggcgatgtgtctc	12	9	3	2			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	7	6013049	6013049	C	G	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.2570	p.G857A	0.999	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	8	0	0	7	13	65	-	-	-	G	6013049	C	G	6013049	3	3	48	1	0	0	0	0	1	0	0	0	12217	507	18	4	22	4	PMS2	7	6013049	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09		6013049	153125614	15	2458										
NCOA2	0	genome.wustl.edu	37	chr8	71060629	71060629	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tcaactgatccagcaggggcGcctggcctcgtgtctgggaa	14	12	2	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	8	71060629	71060629	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.2484	p.G828	0.974	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	81	0	0	65	42	39.25	-	-	-	A	71060629	G	A	71060629	2	1	48	1	0	0	0	0	0	0	0	1	10301	1074	38	1		1	NCOA2	8	71060629	Silent	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		71060629	75303393	16	2459										
PTCH1	0	genome.wustl.edu	37	chr9	98211487	98211487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tcgtctgggaactatactccGagtcggaggaatcagacccg	12	11	2	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	9	98211487	98211487	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3668	p.S1223L	0.998	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	43	0	0	47	32	40.51	-	-	-	A	98211487	G	A	98211487	3	1	48	1	0	0	0	0	1	0	0	0	12810	1059	37	1	683	1	PTCH1	9	98211487	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		98211487	43001944	17	2460										
SVEP1	0	genome.wustl.edu	37	chr9	113168951	113168951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tccatggagcttataaccagGaaagcactgatactgtatat	8	8	0	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	9	113168951	113168951	G	C	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.8929	p.P2977A	0.982	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	61	0	0	49	33	40.24	-	-	-	C	113168951	G	C	113168951	3	2	48	1	0	0	0	0	1	0	0	0	15511	1174	41	2	1830	2	SVEP1	9	113168951	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09	14957464	113168951	28044480	18	2461										
MUC5B	0	genome.wustl.edu	37	chr11	1266503	1266503	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	ttcccacaccccagcagcaaCcaccggtaccacccagcact	5	21	0	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	11	1266503	1266503	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8402	p.T2801N	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0	30	10	25	-	-	-	A	1266503	C	A	1266503	3	1	48	1	0	0	0	0	1	0	0	0	10051	507	18	4	8524	4	MUC5B	11	1266503	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09		1266503	133740013	19	2462										
C1QTNF5	0	genome.wustl.edu	37	chr11	119213687	119213688	+	Frame_Shift_Ins	INS	-	-	G													0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	atggtgcgaggagacgaggtINSgggggggtggctctgctcca							TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	11	119213687	119213688	-	G	INS	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1151_1150	p.H384fs	0.000:0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	15	0	0	7	3	30	-	-	-	G	119213688	-	G	119213687	7	5	48	1	0	1	1	0	0	0	0	0	1985	1696	59	0		0	C1QTNF5	11	119213687	Frame_Shift_Ins	INS	-	TCGA-A2-A0ER-01A-21W-A050-09	117947184	119213687	15792829	20	2463										
HVCN1	0	genome.wustl.edu	37	chr12	111089194	111089194	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	tccaggcggaagacaaataaTttaaagatgatctccatcat	7	8	2	3			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	12	111089194	111089194	T	G	SNP	HVCN1	ENST00000242607	human	ensembl	69_37n	-1	known	missense	c.471	p.K157N	0.277	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986	118	0	0	104	40	27.78	-	-	-	G	111089194	T	G	111089194	3	3	48	1	0	0	0	0	1	0	0	0	7516	1490	52	5	362	5	HVCN1	12	111089194	Missense_Mutation	SNP	T	TCGA-A2-A0ER-01A-21W-A050-09		111089194	22762701	21	2464										
RBM19	0	genome.wustl.edu	37	chr12	114352823	114352823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	ggcctggaaggggatgttccGcaccaggatcttggaggtgg	18	8	1	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	12	114352823	114352823	G	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.2509	p.R837W	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	78	0	0	56	25	30.86	-	-	-	A	114352823	G	A	114352823	3	1	48	1	0	0	0	0	1	0	0	0	13204	1086	38	1	389	1	RBM19	12	114352823	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09	3263629	114352823	19499072	22	2465										
SIPA1L1	0	genome.wustl.edu	37	chr14	72138130	72138130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	aagtctaagccatatccaggAgccgagctcagcagcatggg	12	11	2	0			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	14	72138130	72138130	A	G	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.2550	p.G850	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	127	0	0	146	18	10.98	-	-	-	G	72138130	A	G	72138130	2	3	48	1	0	0	0	0	0	0	0	1	14418	291	11	5		5	SIPA1L1	14	72138130	Silent	SNP	A	TCGA-A2-A0ER-01A-21W-A050-09		72138130	35211410	23	2466										
CCDC33	0	genome.wustl.edu	37	chr15	74622637	74622637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	aaccgcatactgaggagccgCctggcccagcaggaggagga	15	12	0	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	15	74622637	74622637	C	T	SNP	CCDC33	ENST00000558659	human	ensembl	69_37n	1	putative	missense	c.1039	p.P347S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC33	HGNC	ENSG00000140481	57	0	0	48	22	30.99	-	-	-	T	74622637	C	T	74622637	3	4	48	1	0	0	0	0	1	0	0	0	2832	726	26	4	1517	4	CCDC33	15	74622637	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09		74622637	27908755	24	2467										
ACSM2B	0	genome.wustl.edu	37	chr16	20576133	20576133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	acatctgagtaccccacaggGtgcaaagtccctgaactttt	8	12	1	2			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	16	20576133	20576133	G	T	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	missense	c.35	p.T12N	0.002	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	170	0	0	147	69	31.94	-	-	-	T	20576133	G	T	20576133	3	4	48	1	0	0	0	0	1	0	0	0	184	1261	44	4	1750	4	ACSM2B	16	20576133	Missense_Mutation	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		20576133	69778620	25	2468										
ZNF331	0	genome.wustl.edu	37	chr19	54081068	54081068	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	gggtgtacagaatgtgggaaGagctttagtcacggccatca	14	7	2	2			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	19	54081068	54081068	G	A	SNP	ZNF331	ENST00000253144	human	ensembl	69_37n	1	known	silent	c.1254	p.K418	0.897	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844	76	0	0	69	19	21.59	-	-	-	A	54081068	G	A	54081068	2	1	48	1	0	0	0	0	0	0	0	1	17945	933	33	2		2	ZNF331	19	54081068	Silent	SNP	G	TCGA-A2-A0ER-01A-21W-A050-09		54081068	5047915	26	2469										
HUWE1	0	genome.wustl.edu	37	chrX	53570824	53570824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.987712295450081	0.69645390070922	0	0.803600654664484	1	1	0	ttgctgcttgttgctgtctcCgcgccctttgaccctcacgt	9	15	2	1			TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	X	53570824	53570824	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.11357	p.R3786Q	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	174	0	0	112	73	39.46	-	-	-	T	53570824	C	T	53570824	3	4	48	1	0	0	0	0	1	0	0	0	7515	652	23	1	1815	1	HUWE1	23	53570824	Missense_Mutation	SNP	C	TCGA-A2-A0ER-01A-21W-A050-09		53570824	101699736	27	2470										
POTEF	0	genome.wustl.edu	37	chr2	130832127	130832127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgaaggtagtttcatggatgCcacaggattccatgcccagg	12	9	1	1			TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	2	130832127	130832127	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2918	p.G973D	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	9	0	0	6	6	50	-	-	-	T	130832127	C	T	130832127	3	4	49	1	0	0	0	0	1	0	0	0	12339	739	26	4	313	4	POTEF	2	130832127	Missense_Mutation	SNP	C	TCGA-A2-A0ES-01A-11D-A10Y-09		130832127	112367246	1	2471										
CCR4	0	genome.wustl.edu	37	chr3	32995697	32995697	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tggacaccttacaacatagtGctcttcctagagaccctggt	8	12	1	1			TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	3	32995697	32995697	G	A	SNP	CCR4	ENST00000330953	human	ensembl	69_37n	1	known	silent	c.783	p.V261	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_ATII_rcpt,prints_Duffy_chemokine_rcpt	-	no_errors	CCR4	HGNC	ENSG00000183813	119	0	0	124	18	12.68	-	-	-	A	32995697	G	A	32995697	2	1	49	1	0	0	0	0	0	0	0	1	2972	1306	46	4		4	CCR4	3	32995697	Silent	SNP	G	TCGA-A2-A0ES-01A-11D-A10Y-09		32995697	165026733	2	2472										
DNAH8	0	genome.wustl.edu	37	chr6	38754658	38754658	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	tatgataaaaatgaagttggAtgtaccagaacaggcaaaga							TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	6	38754658	38754658	A	-	DEL	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	frame_shift_del	c.1862	p.D621fs	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	195	0	0	276	33	10.61	-	-	-	-	38754658	A	-	38754658	7	5	49	1	0	1	0	1	0	0	0	0	4642	333	12	0	1916	0	DNAH8	6	38754658	Frame_Shift_Del	DEL	A	TCGA-A2-A0ES-01A-11D-A10Y-09		38754658	132360409	3	2473										
TLR7	0	genome.wustl.edu	37	chrX	12904271	12904271	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctctccctgaaagataacaAtgtcacagccgtccctactg	7	14	2	2			TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	X	12904271	12904271	A	G	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.644	p.N215S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	128	0	0	174	22	11.22	-	-	-	G	12904271	A	G	12904271	3	3	49	1	0	0	0	0	1	0	0	0	16051	101	4	5	650	5	TLR7	23	12904271	Missense_Mutation	SNP	A	TCGA-A2-A0ES-01A-11D-A10Y-09		12904271	142366289	4	2474										
GBP4	0	genome.wustl.edu	37	chr1	89661003	89661003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ttctacatcgcccaggccctCggtgtccagaaggaccaggg	12	14	1	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	1	89661003	89661003	C	T	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	247	0	0	129	77	37.38	-	-	-	T	89661003	C	T	89661003	3	4	50	1	0	0	0	0	1	0	0	0	6326	893	31	1	1618	1	GBP4	1	89661003	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		89661003	159589618	1	2475										
PMVK	0	genome.wustl.edu	37	chr1	154904864	154904864	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ttgagtggaccagagagccgGaggacagcacagacatcagc	14	10	1	3			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	1	154904864	154904864	G	A	SNP	PMVK	ENST00000368467	human	ensembl	69_37n	-1	known	silent	c.123	p.L41	0.985	pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344	256	0	0	248	74	22.98	-	-	-	A	154904864	G	A	154904864	2	1	50	1	0	0	0	0	0	0	0	1	12218	1161	41	2		2	PMVK	1	154904864	Silent	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09	65243861	154904864	94345757	2	2476										
DNM3	0	genome.wustl.edu	37	chr1	172376937	172376937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gaccacccccatcaccaactCgtcccactataatccgccca	3	21	1	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	1	172376937	172376937	C	T	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.2548	p.R850C	1.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	591	0	0	932	128	12.05	-	-	-	T	172376937	C	T	172376937	3	4	50	1	0	0	0	0	1	0	0	0	4708	884	31	1	2630	1	DNM3	1	172376937	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09	17472073	172376937	76873684	3	2477										
PYCR2	0	genome.wustl.edu	37	chr1	226109671	226109671	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	caggagctgcccatcctccaCcagggcatgggtgcccgtgg	14	15	0	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	1	226109671	226109671	C	A	SNP	PYCR2	ENST00000343818	human	ensembl	69_37n	-1	known	missense	c.427	p.V143L	1.000	pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR2	HGNC	ENSG00000143811	56	0	0	57	9	13.64	-	-	-	A	226109671	C	A	226109671	3	1	50	1	0	0	0	0	1	0	0	0	12939	507	18	4	551	4	PYCR2	1	226109671	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09	53732734	226109671	23140950	4	2478										
OR2W5	0	genome.wustl.edu	37	chr1	247654611	247654611	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gctccacacacccatgtactTctttcttgggaatctgtctt	6	13	4	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	1	247654611	247654611	T	A	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	295	0	0	300	42	12.28	-	-	-	A	247654611	T	A	247654611	1	1	50	0	1	0	0	0	0	0	0	0	11107	1783	62	5		5	OR2W5	1	247654611	RNA	SNP	T	TCGA-A2-A0ET-01A-31D-A045-09	21544940	247654611	1596010	5	2479										
APOB	0	genome.wustl.edu	37	chr2	21260974	21260974	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ccttctggaatggccagcttGagctcatacctgtcccagag	10	13	2	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	2	21260974	21260974	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.393	p.L131	0.999	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	174	0	0	80	24	23.08	-	-	-	A	21260974	G	A	21260974	2	1	50	1	0	0	0	0	0	0	0	1	787	1277	45	2		2	APOB	2	21260974	Silent	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		21260974	221938399	6	2480										
IWS1	0	genome.wustl.edu	37	chr2	128262380	128262380	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ttgctttttgtgttcttcctCctcactatcagaactgtgaa	6	10	3	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	2	128262380	128262380	C	A	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	nonsense	c.1099	p.E367*	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	809	0	0	126	579	82.01	-	-	-	A	128262380	C	A	128262380	4	1	50	1	0	0	0	0	0	1	0	0	7985	864	30	2	1408	2	IWS1	2	128262380	Nonsense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09	107001406	128262380	114936993	7	2481										
GALNTL6	0	genome.wustl.edu	37	chr4	172735880	172735880	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ggagcagcaggtaagtgccaCccagagaaagatcacacaag	12	10	1	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	4	172735880	172735880	C	A	SNP	GALNTL6	ENST00000511251	human	ensembl	69_37n	1	putative	missense	c.149	p.T50N	0.000	NULL	NULL	-	no_errors	GALNTL6	HGNC	ENSG00000174473	123	0	0	135	28	17.18	-	-	-	A	172735880	C	A	172735880	3	1	50	1	0	0	0	0	1	0	0	0	6275	522	18	4		4	GALNTL6	4	172735880	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		172735880	18418396	8	2482										
TRIO	0	genome.wustl.edu	37	chr5	14504592	14504592	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	aacaagaagttgatgaagcgCgaccaggtcacccatgagct	11	10	1	4			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	5	14504592	14504592	C	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.8502	p.R2834	0.800	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	100	0	0	100	32	24.24	-	-	-	T	14504592	C	T	14504592	2	4	50	1	0	0	0	0	0	0	0	1	16648	755	27	1		1	TRIO	5	14504592	Silent	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		14504592	166410668	9	2483										
IQGAP2	0	genome.wustl.edu	37	chr5	75967586	75967586	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	tgtcttgggcttttttagatCaaaagtggaccaggtacagg	12	6	2	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	5	75967586	75967586	C	A	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	nonsense	c.2846	p.S949*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	286	0	0	146	19	11.52	-	-	-	A	75967586	C	A	75967586	4	1	50	1	0	0	0	0	0	1	0	0	7869	838	29	2	2940	2	IQGAP2	5	75967586	Nonsense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09	61462994	75967586	104947674	10	2484										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34802149	34802149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ctggcagcagagtgaccttcGccttacccgcatcactgacc	9	16	1	3			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	6	34802149	34802149	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	missense	c.494	p.R165H	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	104	1	0.95	191	35	15.42	-	-	-	A	34802149	G	A	34802149	3	1	50	1	0	0	0	0	1	0	0	0	17065	1087	38	1	512	1	UHRF1BP1	6	34802149	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		34802149	136312918	11	2485										
MYB	0	genome.wustl.edu	37	chr6	135510996	135510997	+	Frame_Shift_Ins	INS	-	-	T													0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	cctgagctcatcaagggtccINSttggaccaaagaagaagatc							TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	6	135510996	135510997	-	T	INS	MYB	ENST00000341911	human	ensembl	69_37n	1	known	frame_shift_ins	c.281_282	p.W95fs	1.000:0.791	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	184	0	0	38	67	63.81	-	-	-	T	135510997	-	T	135510996	7	5	50	1	0	1	1	0	0	0	0	0	10079	681	24	0	295	0	MYB	6	135510996	Frame_Shift_Ins	INS	-	TCGA-A2-A0ET-01A-31D-A045-09	100708847	135510996	35604071	12	2486										
FBXO30	0	genome.wustl.edu	37	chr6	146126058	146126058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ccagcccaagtgtctgaaacGgacttggatttgaaagctgt	11	9	1	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	6	146126058	146126058	G	A	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.1484	p.P495L	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	141	0	0	39	26	39.39	-	-	-	A	146126058	G	A	146126058	3	1	50	1	0	0	0	0	1	0	0	0	5786	1116	39	1	761	1	FBXO30	6	146126058	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09	10615062	146126058	24989009	13	2487										
CTTNBP2	0	genome.wustl.edu	37	chr7	117398014	117398014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	aagctctgacccactgaccaCggcacatttcctagtttcaa	6	14	2	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	7	117398014	117398014	C	T	SNP	CTTNBP2	ENST00000435233	human	ensembl	69_37n	-1	novel	missense	c.224	p.R75H	0.003	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CTTNBP2	HGNC	ENSG00000077063	182	1	0.55	67	10	12.99	-	-	-	T	117398014	C	T	117398014	3	4	50	1	0	0	0	0	1	0	0	0	4077	523	19	1	1860	1	CTTNBP2	7	117398014	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		117398014	41740649	14	2488										
DPYS	0	genome.wustl.edu	37	chr8	105463599	105463599	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	tttctgaggaatggcgaaatCaataatcatggtggtgcctc	11	7	3	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	8	105463599	105463599	C	G	SNP	DPYS	ENST00000351513	human	ensembl	69_37n	-1	known	missense	c.298	p.D100H	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647	190	0	0	56	66	54.1	-	-	-	G	105463599	C	G	105463599	3	3	50	1	0	0	0	0	1	0	0	0	4781	826	29	2	1293	2	DPYS	8	105463599	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		105463599	40900423	15	2489										
SEC61A2	0	genome.wustl.edu	37	chr10	12211338	12211338	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ttctactaaaagataaccccGcacggcatttcacacttgcc	5	14	2	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	10	12211338	12211338	G	A	SNP	SEC61A2	ENST00000495368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC61A2	HGNC	ENSG00000065665	252	1	0.39	189	47	19.92	-	-	-	A	12211338	G	A	12211338	1	1	50	0	1	0	0	0	0	0	0	0	14089	1102	38	1		1	SEC61A2	10	12211338	RNA	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		12211338	123323409	16	2490										
OR51A4	0	genome.wustl.edu	37	chr11	4967799	4967799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ctggtggagacagtaggaatGggataattggtttttcttgc	14	4	1	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	11	4967799	4967799	G	A	SNP	OR51A4	ENST00000380373	human	ensembl	69_37n	-1	known	missense	c.532	p.H178Y	0.248	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497	513	0	0	154	76	33.04	-	-	-	A	4967799	G	A	4967799	3	1	50	1	0	0	0	0	1	0	0	0	11160	1348	47	4	411	4	OR51A4	11	4967799	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		4967799	130038717	17	2491										
GPR182	0	genome.wustl.edu	37	chr12	57389412	57389412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	ctttgtcaacatgtatagcaGcatcttcttcctggtgtgcc	8	11	3	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	12	57389412	57389412	G	A	SNP	GPR182	ENST00000300098	human	ensembl	69_37n	1	known	missense	c.419	p.S140N	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_G10D_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR182	HGNC	ENSG00000166856	303	0	0	87	142	62.01	-	-	-	A	57389412	G	A	57389412	3	1	50	1	0	0	0	0	1	0	0	0	6727	971	34	4	421	4	GPR182	12	57389412	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		57389412	76462483	18	2492										
NTN4	0	genome.wustl.edu	37	chr12	96063918	96063918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gtctgttccttacattcgcaTttacctatggaaagtaaatt	6	8	1	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	12	96063918	96063918	T	C	SNP	NTN4	ENST00000343702	human	ensembl	69_37n	-1	known	silent	c.1515	p.K505	1.000	superfamily_TIMP-like_OB-fold	pfam_Laminin_N,pfam_EGF_laminin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN4	HGNC	ENSG00000074527	248	0	0	75	168	69.14	-	-	-	C	96063918	T	C	96063918	2	2	50	1	0	0	0	0	0	0	0	1	10775	1490	52	5		5	NTN4	12	96063918	Silent	SNP	T	TCGA-A2-A0ET-01A-31D-A045-09	38674506	96063918	37787977	19	2493										
NAA25	0	genome.wustl.edu	37	chr12	112513493	112513493	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	tttactcacttttttagtaaGaggcgccgggaaagggcatt	11	7	1	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	12	112513493	112513493	G	C	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	silent	c.765	p.L255	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	209	0	0	241	39	13.93	-	-	-	C	112513493	G	C	112513493	2	2	50	1	0	0	0	0	0	0	0	1	10193	929	33	2		2	NAA25	12	112513493	Silent	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09	16449575	112513493	21338402	20	2494										
TMEM132B	0	genome.wustl.edu	37	chr12	126139187	126139187	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gataacatcaagtgggtctgCcaagatatggggctggggga	16	6	2	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	12	126139187	126139187	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	nonsense	c.3168	p.C1056*	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	63	0	0	26	57	68.67	-	-	-	A	126139187	C	A	126139187	4	1	50	1	0	0	0	0	0	1	0	0	16141	747	26	4	3202	4	TMEM132B	12	126139187	Nonsense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09	13625694	126139187	7712708	21	2495										
DHRS2	0	genome.wustl.edu	37	chr14	24112421	24112421	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gccagttgctgccctacatgGagaacaggtatggcagggcg	15	10	0	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	14	24112421	24112421	G	T	SNP	DHRS2	ENST00000344777	human	ensembl	69_37n	1	known	nonsense	c.481	p.E161*	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS2	HGNC	ENSG00000100867	38	0	0	33	41	55.41	-	-	-	T	24112421	G	T	24112421	4	4	50	1	0	0	0	0	0	1	0	0	4526	1175	41	2	495	2	DHRS2	14	24112421	Nonsense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		24112421	83237119	22	2496										
FSCB	0	genome.wustl.edu	37	chr14	44973848	44973848	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gaaacctcttcaaattttgcTtcaccttccaaaacaaccga	3	13	3	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	14	44973848	44973848	T	C	SNP	FSCB	ENST00000340446	human	ensembl	69_37n	-1	known	silent	c.2343	p.E781	0.000	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	73	0	0	24	24	50	-	-	-	C	44973848	T	C	44973848	2	2	50	1	0	0	0	0	0	0	0	1	6115	1606	56	5		5	FSCB	14	44973848	Silent	SNP	T	TCGA-A2-A0ET-01A-31D-A045-09	20861427	44973848	62375692	23	2497										
ZFP90	0	genome.wustl.edu	37	chr16	68591931	68591931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	cattcaaagatgtgtctgtgGacttcacccaggaagaatgg	11	8	3	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	16	68591931	68591931	G	T	SNP	ZFP90	ENST00000398253	human	ensembl	69_37n	1	known	missense	c.64	p.D22Y	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939	624	0	0	145	143	49.65	-	-	-	T	68591931	G	T	68591931	3	4	50	1	0	0	0	0	1	0	0	0	17750	1174	41	2	70	2	ZFP90	16	68591931	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		68591931	21762822	24	2498										
FAM59A	0	genome.wustl.edu	37	chr18	29867436	29867436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	actgggtgagctcatcgcggGcgtagctgagcgaattgggc	17	9	1	2			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	18	29867436	29867436	G	A	SNP	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	missense	c.1124	p.A375V	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	256	0	0	166	23	12.04	-	-	-	A	29867436	G	A	29867436	3	1	50	1	0	0	0	0	1	0	0	0	5637	1203	42	4	1515	4	FAM59A	18	29867436	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09		29867436	48209812	25	2499										
TMEM161A	0	genome.wustl.edu	37	chr19	19240990	19240990	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	tccaggcccagctcgagggtCtcctcccgcaccacttgcac	9	19	1	0			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	19	19240990	19240990	C	A	SNP	TMEM161A	ENST00000162044	human	ensembl	69_37n	-1	known	missense	c.570	p.E190D	0.948	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545	108	0	0	21	17	44.74	-	-	-	A	19240990	C	A	19240990	3	1	50	1	0	0	0	0	1	0	0	0	16171	912	32	2	897	2	TMEM161A	19	19240990	Missense_Mutation	SNP	C	TCGA-A2-A0ET-01A-31D-A045-09		19240990	39887993	26	2500										
ATP1A3	0	genome.wustl.edu	37	chr19	42471431	42471431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	cctgcgcaggatgagtttgcGgatttcgtcgtagacgaaga	14	8	0	3			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	19	42471431	42471431	G	A	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	missense	c.3022	p.R1008C	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	57	0	0	42	36	46.15	-	-	-	A	42471431	G	A	42471431	3	1	50	1	0	0	0	0	1	0	0	0	1134	1116	39	1	66	1	ATP1A3	19	42471431	Missense_Mutation	SNP	G	TCGA-A2-A0ET-01A-31D-A045-09	23230441	42471431	16657552	27	2501										
LIPE	0	genome.wustl.edu	37	chr19	42930910	42930910	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	gggctacatgtctttgtctcAatgctggctcctgttgagtt	11	9	2	1			TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	19	42930910	42930910	A	C	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	missense	c.392	p.L131W	0.003	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	208	0	0	232	148	38.85	-	-	-	C	42930910	A	C	42930910	3	2	50	1	0	0	0	0	1	0	0	0	8877	131	5	5	2878	5	LIPE	19	42930910	Missense_Mutation	SNP	A	TCGA-A2-A0ET-01A-31D-A045-09	459479	42930910	16198073	28	2502										
FANCB	0	genome.wustl.edu	37	chrX	14871234	14871235	+	Frame_Shift_Ins	INS	-	-	T													0.103448275862069	3	0.683080497494884	1.44556962025316	7.22784810126582	0.555988315481986	1	1	0	tttgtaagattttgaaataaINSttttttccttaagcaacaga							TCGA-A2-A0ET-01A-31D-A045-09	TCGA-A2-A0ET-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb	2f6a3862-f59a-4b35-9444-11db363db47b	X	14871234	14871235	-	T	INS	FANCB	ENST00000324138	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1253_1252	p.I418fs	0.859:0.810	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544	212	0	0	160	45	21.95	-	-	-	T	14871235	-	T	14871234	7	5	50	1	0	1	1	0	0	0	0	0	5709	101	4	0	1346	0	FANCB	23	14871234	Frame_Shift_Ins	INS	-	TCGA-A2-A0ET-01A-31D-A045-09		14871234	140399326	29	2503										
UBR4	0	genome.wustl.edu	37	chr1	19504222	19504222	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ccttgcagggcattctgcttCattgtagacaaaaacctacc	7	12	2	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	19504222	19504222	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.2370	p.M790I	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	221	0	0	149	23	13.37	-	-	-	T	19504222	C	T	19504222	3	4	51	1	0	0	0	0	1	0	0	0	17001	826	29	2	13533	2	UBR4	1	19504222	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09		19504222	229746399	1	2504										
EIF2B3	0	genome.wustl.edu	37	chr1	45363093	45363093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ggtgggcatccacaagacccGtgtggaaacgtattctagga	13	9	1	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	45363093	45363093	G	A	SNP	EIF2B3	ENST00000360403	human	ensembl	69_37n	-1	known	missense	c.590	p.T197M	1.000	NULL	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785	52	0	0	38	9	18.75	-	-	-	A	45363093	G	A	45363093	3	1	51	1	0	0	0	0	1	0	0	0	5037	1145	40	1	833	1	EIF2B3	1	45363093	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	25858871	45363093	203887528	2	2505										
DOCK7	0	genome.wustl.edu	37	chr1	63084424	63084424	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tcccttgcgggaaactctaaGatttctctggtaggtctaac	9	10	3	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	63084424	63084424	G	C	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.1635	p.I545M	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	149	0	0	101	68	40.24	-	-	-	C	63084424	G	C	63084424	3	2	51	1	0	0	0	0	1	0	0	0	4727	932	33	2	4838	2	DOCK7	1	63084424	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	17721331	63084424	186166197	3	2506										
GBP4	0	genome.wustl.edu	37	chr1	89651075	89651075	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tttttagtgctttcaattttTtctttcagttgattaatctc	4	6	4	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	89651075	89651075	T	G	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.1785	p.E595D	0.000	superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	229	0	0	153	35	18.62	-	-	-	G	89651075	T	G	89651075	3	3	51	1	0	0	0	0	1	0	0	0	6326	1838	64	5	141	5	GBP4	1	89651075	Missense_Mutation	SNP	T	TCGA-A2-A0EU-01A-22W-A071-09	26566651	89651075	159599546	4	2507										
FMNL2	0	genome.wustl.edu	37	chr2	153504368	153504368	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	aggagaagcgtcaggcggcgCtttgatgatcagaacttgcg	15	8	2	4			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	2	153504368	153504368	C	T	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	silent	c.3228	p.R1076	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	210	0	0	118	21	15	-	-	-	T	153504368	C	T	153504368	2	4	51	1	0	0	0	0	0	0	0	1	5998	784	28	4		4	FMNL2	2	153504368	Silent	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09		153504368	89695005	5	2508										
HEG1	0	genome.wustl.edu	37	chr3	124746052	124746052	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gggtatgtggcactcacatgAggaaaggtctaagagaggag	16	5	2	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	3	124746052	124746052	A	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.910	p.S304P	0.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	69	0	0	24	36	60	-	-	-	G	124746052	A	G	124746052	3	3	51	1	0	0	0	0	1	0	0	0	7095	304	11	5	3295	5	HEG1	3	124746052	Missense_Mutation	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09		124746052	73276378	6	2509										
AADAC	0	genome.wustl.edu	37	chr3	151545656	151545656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	aaaaggacatgtttataacaAtccaaattatggcagttctg	7	6	1	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	3	151545656	151545656	A	G	SNP	AADAC	ENST00000232892	human	ensembl	69_37n	1	known	missense	c.896	p.N299S	0.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771	153	0	0	149	35	19.02	-	-	-	G	151545656	A	G	151545656	3	3	51	1	0	0	0	0	1	0	0	0	10	101	4	5	914	5	AADAC	3	151545656	Missense_Mutation	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09	26799604	151545656	46476774	7	2510										
PRKG2	0	genome.wustl.edu	37	chr4	82056310	82056310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gtgagaaaagttgtcttaccAatttaaggtaaccctcagca	8	8	2	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	82056310	82056310	A	G	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	missense	c.1775	p.L592S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	185	1	0.54	177	48	21.33	-	-	-	G	82056310	A	G	82056310	3	3	51	1	0	0	0	0	1	0	0	0	12604	144	5	5	537	5	PRKG2	4	82056310	Missense_Mutation	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09		82056310	109097966	8	2511										
PTPN13	0	genome.wustl.edu	37	chr4	87607896	87607897	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tcttggaatgacactgtattINSggggggctgattatgaagtg							TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	87607896	87607897	-	G	INS	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	frame_shift_ins	c.328_329	p.A112fs	1.000:1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PAZ,smart_KIND	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	21	0	0	16	2	11.11	-	-	-	G	87607897	-	G	87607896	7	5	51	1	0	1	1	0	0	0	0	0	12863	1812	63	0	338	0	PTPN13	4	87607896	Frame_Shift_Ins	INS	-	TCGA-A2-A0EU-01A-22W-A071-09	5551586	87607896	103546380	9	2512										
ADAM29	0	genome.wustl.edu	37	chr4	175896776	175896776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	atcacagccctccggatgtgGtgattcctgtgaggataact	11	10	1	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	175896776	175896776	G	T	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.100	p.V34L	0.994	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	88	0	0	60	44	42.31	-	-	-	T	175896776	G	T	175896776	3	4	51	1	0	0	0	0	1	0	0	0	247	1261	44	4	102	4	ADAM29	4	175896776	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	88288880	175896776	15257500	10	2513										
FAM149A	0	genome.wustl.edu	37	chr4	187074851	187074851	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	acaaaggcgtccagcatttcCagggcagcactcctgcctcc	9	16	0	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	187074851	187074851	C	A	SNP	FAM149A	ENST00000356371	human	ensembl	69_37n	1	known	missense	c.1012	p.Q338K	0.993	pfam_DUF3719	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794	212	0	0	127	23	15.33	-	-	-	A	187074851	C	A	187074851	3	1	51	1	0	0	0	0	1	0	0	0	5495	595	21	4	145	4	FAM149A	4	187074851	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	11178075	187074851	4079425	11	2514										
MAP3K1	0	genome.wustl.edu	37	chr5	56160679	56160680	+	Frame_Shift_Ins	INS	-	-	A													0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	atgcgggccagactgtacttINSactgcagcagatagggccta							TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	56160679	56160680	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.953_954	p.L319fs	0.965:0.937	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	99	0	0	55	48	46.6	-	-	-	A	56160680	-	A	56160679	7	5	51	1	0	1	1	0	0	0	0	0	9314	1764	61	0	967	0	MAP3K1	5	56160679	Frame_Shift_Ins	INS	-	TCGA-A2-A0EU-01A-22W-A071-09		56160679	124754581	12	2515										
MAP3K1	0	genome.wustl.edu	37	chr5	56181765	56181765	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ctattgtcttatagggggatCggtggctcatttgctgagta	13	6	2	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	56181765	56181765	C	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.3989	p.S1330W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	136	0	0	101	48	32.21	-	-	-	G	56181765	C	G	56181765	3	3	51	1	0	0	0	0	1	0	0	0	9314	893	31	3	4055	3	MAP3K1	5	56181765	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	21086	56181765	124733495	13	2516										
CHSY3	0	genome.wustl.edu	37	chr5	129243980	129243980	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	atgccttagagaaatgtacaCgactcatgaggatgtggaag	12	6	1	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	129243980	129243980	C	A	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	missense	c.1013	p.T338K	1.000	pfam_Chond_GalNAc,pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	43	0	0	40	18	31.03	-	-	-	A	129243980	C	A	129243980	3	1	51	1	0	0	0	0	1	0	0	0	3442	536	19	3	1019	3	CHSY3	5	129243980	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	73062215	129243980	51671280	14	2517										
PCDHA5	0	genome.wustl.edu	37	chr5	140201481	140201481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tcccggaggaagccaaacacGgaaccttcgttggccgcatc	11	14	0	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	140201481	140201481	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.121	p.G41R	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	39	0	0	37	7	15.91	-	-	-	A	140201481	G	A	140201481	3	1	51	1	0	0	0	0	1	0	0	0	11600	1117	39	1	123	1	PCDHA5	5	140201481	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	10957501	140201481	40713779	15	2518										
PCDHB7	0	genome.wustl.edu	37	chr5	140554089	140554089	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gctggacgccaacgacaactCgcccttcgtgctgtacccgc	10	17	0	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	140554089	140554089	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1673	p.S558L	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	70	0	0	64	12	15.79	-	-	-	T	140554089	C	T	140554089	3	4	51	1	0	0	0	0	1	0	0	0	11620	893	31	1	1675	1	PCDHB7	5	140554089	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	352608	140554089	40361171	16	2519										
ZBTB22	0	genome.wustl.edu	37	chr6	33284663	33284663	+	Frame_Shift_Del	DEL	C	C	-													0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	cagcggcaggggaagtgctgCcccactgggagacagaggag							TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	33284663	33284663	C	-	DEL	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	frame_shift_del	c.31	p.A11fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	25	0	0	11	6	33.33	-	-	-	-	33284663	C	-	33284663	7	5	51	1	0	1	0	1	0	0	0	0	17626	739	26	0	1877	0	ZBTB22	6	33284663	Frame_Shift_Del	DEL	C	TCGA-A2-A0EU-01A-22W-A071-09		33284663	137830404	17	2520										
PKHD1	0	genome.wustl.edu	37	chr6	51524257	51524257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	agtgaatggaaacacctgagCgtatttcaatgggctcctct	10	9	2	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	51524257	51524257	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.10667	p.R3556H	0.001	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	164	0	0	156	30	16.13	-	-	-	T	51524257	C	T	51524257	3	4	51	1	0	0	0	0	1	0	0	0	12045	768	27	1	1585	1	PKHD1	6	51524257	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	18239594	51524257	119590810	18	2521										
TNFAIP3	0	genome.wustl.edu	37	chr6	138200082	138200082	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ttttgtgaacgttgccacaaCgcccggcaacttcacgccag	9	14	1	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	138200082	138200082	C	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	silent	c.1500	p.N500	0.044	pfam_Znf_A20,smart_Znf_A20,pfscan_Znf_A20	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	54	0	0	35	9	20.45	-	-	-	T	138200082	C	T	138200082	2	4	51	1	0	0	0	0	0	0	0	1	16369	535	19	1		1	TNFAIP3	6	138200082	Silent	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	86675825	138200082	32914985	19	2522										
DMRT3	0	genome.wustl.edu	37	chr9	990144	990144	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tccccagatgtggcaaagagTaagggctgcttcacccctga	11	12	1	3			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	9	990144	990144	T	A	SNP	DMRT3	ENST00000190165	human	ensembl	69_37n	1	known	missense	c.558	p.S186R	0.862	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218	68	0	0	35	15	30	-	-	-	A	990144	T	A	990144	3	1	51	1	0	0	0	0	1	0	0	0	4623	1635	57	5	564	5	DMRT3	9	990144	Missense_Mutation	SNP	T	TCGA-A2-A0EU-01A-22W-A071-09		990144	140223287	20	2523										
OR4A5	0	genome.wustl.edu	37	chr11	51412164	51412164	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gaataagcctacaattaactTgggagaaatggtagtggaat	11	4	0	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	11	51412164	51412164	T	G	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	missense	c.232	p.K78Q	0.627	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	200	1	0.5	278	57	16.96	-	-	-	G	51412164	T	G	51412164	3	3	51	1	0	0	0	0	1	0	0	0	11116	1821	63	5	719	5	OR4A5	11	51412164	Missense_Mutation	SNP	T	TCGA-A2-A0EU-01A-22W-A071-09		51412164	83594352	21	2524										
IL10RA	0	genome.wustl.edu	37	chr11	117864082	117864082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	aagcatcttcagtcacttccGagagtatgagattgccattc	8	10	3	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	11	117864082	117864082	G	A	SNP	IL10RA	ENST00000227752	human	ensembl	69_37n	1	known	missense	c.494	p.R165Q	0.978	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324	52	0	0	17	19	52.78	-	-	-	A	117864082	G	A	117864082	3	1	51	1	0	0	0	0	1	0	0	0	7674	1058	37	1	508	1	IL10RA	11	117864082	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	66451918	117864082	17142434	22	2525										
CNTN1	0	genome.wustl.edu	37	chr12	41352942	41352942	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tccaatggggaattactaatCcgaaatgcgcagctgaaaca	9	9	0	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	12	41352942	41352942	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	silent	c.1710	p.I570	0.993	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	136	0	0	210	30	12.5	-	-	-	T	41352942	C	T	41352942	2	4	51	1	0	0	0	0	0	0	0	1	3670	845	30	2		2	CNTN1	12	41352942	Silent	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09		41352942	92498953	23	2526										
AMDHD1	0	genome.wustl.edu	37	chr12	96360235	96360235	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gggaaagtctcacacacacgGatcgttggaagttggcaaac	12	9	1	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	12	96360235	96360235	G	C	SNP	AMDHD1	ENST00000266736	human	ensembl	69_37n	1	known	missense	c.1142	p.G381A	1.000	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344	138	0	0	157	24	13.19	-	-	-	C	96360235	G	C	96360235	3	2	51	1	0	0	0	0	1	0	0	0	567	1174	41	2	1172	2	AMDHD1	12	96360235	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	55007293	96360235	37491660	24	2527										
DCT	0	genome.wustl.edu	37	chr13	95118847	95118847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	cagacacaacaaatggtaccGgtgccaggtaacaaatgcag	10	10	0	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	13	95118847	95118847	G	A	SNP	DCT	ENST00000446125	human	ensembl	69_37n	-1	known	missense	c.661	p.R221W	0.992	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	156	0	0	72	23	24.21	-	-	-	A	95118847	G	A	95118847	3	1	51	1	0	0	0	0	1	0	0	0	4335	1115	39	1	1029	1	DCT	13	95118847	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09		95118847	20051031	25	2528										
FOXA1	0	genome.wustl.edu	37	chr14	38061410	38061410	+	Frame_Shift_Del	DEL	C	C	-													0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	atccactggtagatctcgctCagcgtgagcatcttgctggg							TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	14	38061410	38061410	C	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.579	p.S194fs	0.998	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	31	0	0	12	6	33.33	-	-	-	-	38061410	C	-	38061410	7	5	51	1	0	1	0	1	0	0	0	0	6035	813	29	0	843	0	FOXA1	14	38061410	Frame_Shift_Del	DEL	C	TCGA-A2-A0EU-01A-22W-A071-09		38061410	69288130	26	2529										
STRC	0	genome.wustl.edu	37	chr15	43893206	43893206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	taggaaactggagaccacaaTgcggagctggggtggggggt	19	6	0	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	43893206	43893206	T	C	SNP	STRC	ENST00000450892	human	ensembl	69_37n	-1	known	missense	c.4708	p.I1570V	0.047	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866	123	0	0	50	12	19.35	-	-	-	C	43893206	T	C	43893206	3	2	51	1	0	0	0	0	1	0	0	0	15419	1464	51	5	639	5	STRC	15	43893206	Missense_Mutation	SNP	T	TCGA-A2-A0EU-01A-22W-A071-09		43893206	58638186	27	2530										
VPS13C	0	genome.wustl.edu	37	chr15	62161736	62161736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ggtactactggccatatctaCgattccaccagttggacggg	11	11	1	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	62161736	62161736	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.10711	p.V3571I	0.996	pfam_Autophagy-rel_C	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	184	0	0	225	54	19.35	-	-	-	T	62161736	C	T	62161736	3	4	51	1	0	0	0	0	1	0	0	0	17288	536	19	1	602	1	VPS13C	15	62161736	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	18268530	62161736	40369656	28	2531										
ZNF592	0	genome.wustl.edu	37	chr15	85345429	85345429	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gaggtggcagagccagaggaGggctccggggaggaggtgcc	22	8	0	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	85345429	85345429	G	A	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	silent	c.3609	p.E1203	0.253	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	37	0	0	16	9	36	-	-	-	A	85345429	G	A	85345429	2	1	51	1	0	0	0	0	0	0	0	1	18118	991	35	4		4	ZNF592	15	85345429	Silent	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	23183693	85345429	17185963	29	2532										
MUC16	0	genome.wustl.edu	37	chr19	9066848	9066848	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tcttcatctgttgtcagtatCtcatgtgaggtactgctcaa	8	9	6	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	9066848	9066848	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.20598	p.E6866	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	447	1	0.22	296	108	26.73	-	-	-	T	9066848	C	T	9066848	2	4	51	1	0	0	0	0	0	0	0	1	10045	912	32	2		2	MUC16	19	9066848	Silent	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09		9066848	50062135	30	2533										
ZNF559	0	genome.wustl.edu	37	chr19	9453596	9453596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	catgagaactcacactggtgAacggccctttgaatgtcagg	11	10	2	3			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	9453596	9453596	A	C	SNP	ZNF559	ENST00000393883	human	ensembl	69_37n	1	known	missense	c.1469	p.E490A	0.006	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321	168	0	0	150	57	27.54	-	-	-	C	9453596	A	C	9453596	3	2	51	1	0	0	0	0	1	0	0	0	18086	246	9	5	1483	5	ZNF559	19	9453596	Missense_Mutation	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09	386748	9453596	49675387	31	2534										
SIN3B	0	genome.wustl.edu	37	chr19	16976371	16976372	+	Frame_Shift_Ins	INS	-	-	TT													0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ggtgatccagcgccgtgccaINStttatcgcatctatggcgac							TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	16976371	16976372	-	TT	INS	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	frame_shift_ins	c.1630_1631	p.Y545fs	0.991:1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	24	0	0	11	5	31.25	-	-	-	TT	16976372	-	TT	16976371	7	5	51	1	0	1	1	0	0	0	0	0	14415	217	8	0	1676	0	SIN3B	19	16976371	Frame_Shift_Ins	INS	-	TCGA-A2-A0EU-01A-22W-A071-09	7522775	16976371	42152612	32	2535										
SIPA1L3	0	genome.wustl.edu	37	chr19	38631959	38631959	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	cccgcatcccataactctctAccagcctccaagtgggccac	6	19	1	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	38631959	38631959	A	G	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	silent	c.3279	p.L1093	0.037	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	107	0	0	65	15	17.86	-	-	-	G	38631959	A	G	38631959	2	3	51	1	0	0	0	0	0	0	0	1	14420	378	14	5		5	SIPA1L3	19	38631959	Silent	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09	21655588	38631959	20497024	33	2536										
PTPRH	0	genome.wustl.edu	37	chr19	55693164	55693164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	tggatggcggccacgttctcGtagatgaggttttcgacatc	13	9	1	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	55693164	55693164	G	A	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	silent	c.3306	p.Y1102	0.433	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	110	0	0	42	10	19.23	-	-	-	A	55693164	G	A	55693164	2	1	51	1	0	0	0	0	0	0	0	1	12886	1140	40	1		1	PTPRH	19	55693164	Silent	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09	17061205	55693164	3435819	34	2537										
CTSA	0	genome.wustl.edu	37	chr20	44521044	44521044	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	ccctcccctctagattgccaAtgtgttatacctggagtccc	7	15	1	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	20	44521044	44521044	A	T	SNP	CTSA	ENST00000372484	human	ensembl	69_37n	1	known	missense	c.419	p.N140I	0.987	pfam_Peptidase_S10,prints_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601	91	0	0	69	9	11.54	-	-	-	T	44521044	A	T	44521044	3	4	51	1	0	0	0	0	1	0	0	0	4061	101	4	5	437	5	CTSA	20	44521044	Missense_Mutation	SNP	A	TCGA-A2-A0EU-01A-22W-A071-09		44521044	18504476	35	2538										
GRIK1	0	genome.wustl.edu	37	chr21	31023551	31023551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gttgtcaatgttaagcagccGaaacccggtcatgtttacgc	10	10	2	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	21	31023551	31023551	G	A	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.841	p.R281W	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	68	0	0	35	8	18.6	-	-	-	A	31023551	G	A	31023551	3	1	51	1	0	0	0	0	1	0	0	0	6824	1057	37	1	2123	1	GRIK1	21	31023551	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09		31023551	17106344	36	2539										
ABCG1	0	genome.wustl.edu	37	chr21	43645875	43645875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	caacatggaggccactgagaCggacctgctgaatggacatc	12	11	0	2			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	21	43645875	43645875	C	T	SNP	ABCG1	ENST00000361802	human	ensembl	69_37n	1	known	missense	c.137	p.T46M	0.946	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	74	0	0	36	6	14.29	-	-	-	T	43645875	C	T	43645875	3	4	51	1	0	0	0	0	1	0	0	0	68	536	19	1	311	1	ABCG1	21	43645875	Missense_Mutation	SNP	C	TCGA-A2-A0EU-01A-22W-A071-09	12622324	43645875	4484020	37	2540										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685532	125685532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	gcggtagaagctcagcgaccGcacgcctgtgccaccctctc	11	17	2	1			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	X	125685532	125685532	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	missense	c.1060	p.R354W	0.945	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	35	0	0	36	18	33.33	-	-	-	A	125685532	G	A	125685532	3	1	51	1	0	0	0	0	1	0	0	0	4296	1086	38	1	335	1	DCAF12L1	23	125685532	Missense_Mutation	SNP	G	TCGA-A2-A0EU-01A-22W-A071-09		125685532	29585028	38	2541										
IGSF1	0	genome.wustl.edu	37	chrX	130409529	130409529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.79133532817198	1.26	2.8	0.988235294117647	1	1	0	cagggtggtagcagcagctgTaacgccccatgctagtacca	12	12	0	0			TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	X	130409529	130409529	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3122	p.Y1041C	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	345	0	0	227	43	15.87	-	-	-	C	130409529	T	C	130409529	3	2	51	1	0	0	0	0	1	0	0	0	7650	1638	57	5	923	5	IGSF1	23	130409529	Missense_Mutation	SNP	T	TCGA-A2-A0EU-01A-22W-A071-09	4723997	130409529	24861031	39	2542										
TESK2	0	genome.wustl.edu	37	chr1	45923438	45923438	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gaggaaatcctgcaattgaaTtccgtttgctccgatccata	8	10	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	1	45923438	45923438	T	C	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	missense	c.20	p.N7S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	298	0	0	242	129	34.77	-	-	-	C	45923438	T	C	45923438	3	2	52	1	0	0	0	0	1	0	0	0	15863	1493	52	5	1735	5	TESK2	1	45923438	Missense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09		45923438	203327183	1	2543										
C1orf61	0	genome.wustl.edu	37	chr1	156389981	156389982	+	Frame_Shift_Ins	INS	-	-	G													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cctgtgccgactggggtgctINSgggggggtgaaatgtcgccc							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	1	156389981	156389982	-	G	INS	C1orf61	ENST00000368242	human	ensembl	69_37n	-1	known	frame_shift_ins	c.148_147	p.S49fs	0.000:0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf61	HGNC	ENSG00000125462	28	0	0	21	3	12.5	-	-	-	G	156389982	-	G	156389981	7	5	52	1	0	1	1	0	0	0	0	0	2072	1595	55	0		0	C1orf61	1	156389981	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09	110466543	156389981	92860640	2	2544										
USH2A	0	genome.wustl.edu	37	chr1	215802376	215802376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gaattttggtatcggctaacCcctgagaaggaagttgctgt	12	7	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	1	215802376	215802376	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.15371	p.G5124E	1.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	99	0	0	102	28	21.37	-	-	-	T	215802376	C	T	215802376	3	4	52	1	0	0	0	0	1	0	0	0	17133	637	22	4	317	4	USH2A	1	215802376	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	59412395	215802376	33448245	3	2545										
OR2L13	0	genome.wustl.edu	37	chr1	248263384	248263384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	aaaggaggggagaaaaaaggCcttcaccaccatttcaacac	9	10	2	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	1	248263384	248263384	C	G	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	missense	c.707	p.A236G	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	198	0	0	287	36	11.04	-	-	-	G	248263384	C	G	248263384	3	3	52	1	0	0	0	0	1	0	0	0	11079	739	26	4	709	4	OR2L13	1	248263384	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	32461008	248263384	987237	4	2546										
XDH	0	genome.wustl.edu	37	chr2	31595149	31595149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ccggagagacagctcattctCgtagcgaggaatgtcgtcac	12	11	3	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	31595149	31595149	C	T	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.1801	p.E601K	0.397	pfam_Ald_Oxase/Xan_DH_a/b,superfamily_Ald_Oxase/Xan_DH_a/b,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	52	0	0	32	7	17.5	-	-	-	T	31595149	C	T	31595149	3	4	52	1	0	0	0	0	1	0	0	0	17523	893	31	1	2280	1	XDH	2	31595149	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		31595149	211604224	5	2547										
LRPPRC	0	genome.wustl.edu	37	chr2	44174410	44174410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tgttacctcttctgaacaaaGcactaatatgagttgcttta	6	8	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	44174410	44174410	G	A	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.2065	p.L689F	0.948	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	149	0	0	213	41	16.08	-	-	-	A	44174410	G	A	44174410	3	1	52	1	0	0	0	0	1	0	0	0	9031	971	34	4	2195	4	LRPPRC	2	44174410	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	12579261	44174410	199024963	6	2548										
CLASP1	0	genome.wustl.edu	37	chr2	122161955	122161955	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cttcagacttaccttgctatGagggtcagcaaacatccgag	9	11	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	122161955	122161955	G	A	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	missense	c.2725	p.H909Y	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	173	0	0	233	41	14.86	-	-	-	A	122161955	G	A	122161955	3	1	52	1	0	0	0	0	1	0	0	0	3484	1290	45	2	1947	2	CLASP1	2	122161955	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	77987545	122161955	121037418	7	2549										
NEB	0	genome.wustl.edu	37	chr2	152394411	152394411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tgactgtgtcagtgactgctCggtggtggaaatgctctgga	15	7	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	152394411	152394411	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.21077	p.R7026Q	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	199	1	0.5	148	34	18.28	-	-	-	T	152394411	C	T	152394411	3	4	52	1	0	0	0	0	1	0	0	0	10374	884	31	1	4781	1	NEB	2	152394411	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	30232456	152394411	90804962	8	2550										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	44	0	0	47	35	42.17	-	-	-	C	198266834	T	C	198266834	3	2	52	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09	45872423	198266834	44932539	9	2551										
CASP8	0	genome.wustl.edu	37	chr2	202137448	202137448	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tgaaaagagtctgtgcccaaAtcaacaagagcctgctgaag	10	9	2	4			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	202137448	202137448	A	C	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.676	p.I226L	0.000	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	213	0	0	223	35	13.46	-	-	-	C	202137448	A	C	202137448	3	2	52	1	0	0	0	0	1	0	0	0	2702	101	4	5	790	5	CASP8	2	202137448	Missense_Mutation	SNP	A	TCGA-A2-A0EV-01A-11W-A050-09	3870614	202137448	41061925	10	2552										
FARP2	0	genome.wustl.edu	37	chr2	242396201	242396201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tcagccttctccctccagccGgaagagccccctgagtctga	9	17	3	3			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	2	242396201	242396201	G	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	missense	c.1451	p.R484Q	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	37	0	0	30	7	17.95	-	-	-	A	242396201	G	A	242396201	3	1	52	1	0	0	0	0	1	0	0	0	5723	1116	39	1	1501	1	FARP2	2	242396201	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	40258753	242396201	803172	11	2553										
TRAK1	0	genome.wustl.edu	37	chr3	42229603	42229603	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	agttctacaccagcgctgcgGaggagagtgagcccgagtcc	14	12	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	42229603	42229603	G	T	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	nonsense	c.373	p.E125*	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	150	0	0	56	39	41.05	-	-	-	T	42229603	G	T	42229603	4	4	52	1	0	0	0	0	0	1	0	0	16545	1175	41	2	681	2	TRAK1	3	42229603	Nonsense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09		42229603	155792827	12	2554										
ADAMTS9	0	genome.wustl.edu	37	chr3	64587686	64587686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gtgcggctggggctggcgctCcggggacgatagtcctcatt	17	11	1	0			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	64587686	64587686	C	T	SNP	ADAMTS9	ENST00000481060	human	ensembl	69_37n	-1	known	missense	c.1118	p.G373E	0.262	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAMTS9	HGNC	ENSG00000163638	108	0	0	103	19	15.57	-	-	-	T	64587686	C	T	64587686	3	4	52	1	0	0	0	0	1	0	0	0	273	842	30	2	1912	2	ADAMTS9	3	64587686	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	22358083	64587686	133434744	13	2555										
ABI3BP	0	genome.wustl.edu	37	chr3	100595366	100595366	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gacaaattaccttgcttgatGattgttattgggattagttt	9	4	0	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	100595366	100595366	G	T	SNP	ABI3BP	ENST00000483129	human	ensembl	69_37n	-1	novel	missense	c.82	p.H28N	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABI3BP	HGNC	ENSG00000154175	185	0	0	250	125	32.98	-	-	-	T	100595366	G	T	100595366	3	4	52	1	0	0	0	0	1	0	0	0	91	1280	45	2	2587	2	ABI3BP	3	100595366	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	36007680	100595366	97427064	14	2556										
C3orf52	0	genome.wustl.edu	37	chr3	111821786	111821786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	aggagtgtgttgctgaagagGaattgcctcacctgctcacc	12	10	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	111821786	111821786	G	A	SNP	C3orf52	ENST00000431717	human	ensembl	69_37n	1	known	missense	c.370	p.E124K	0.512	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529	81	0	0	112	15	11.72	-	-	-	A	111821786	G	A	111821786	3	1	52	1	0	0	0	0	1	0	0	0	2252	1175	41	2	380	2	C3orf52	3	111821786	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	11226420	111821786	86200644	15	2557										
ZBBX	0	genome.wustl.edu	37	chr3	167034856	167034856	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	atgtttaatgtttctactggCaataaaagagctgtgtgttg	10	4	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	167034856	167034856	C	T	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	silent	c.1131	p.L377	0.953	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	133	0	0	240	40	14.23	-	-	-	T	167034856	C	T	167034856	2	4	52	1	0	0	0	0	0	0	0	1	17613	709	25	4		4	ZBBX	3	167034856	Silent	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	55213070	167034856	30987574	16	2558										
PIK3CA	0	genome.wustl.edu	37	chr3	178928219	178928220	+	In_Frame_Ins	INS	-	-	ATA													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cttttcttccatctcttaggINSaaactccatgcttagagttg							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	178928219	178928220	-	ATA	INS	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	in_frame_ins	c.1405_1406	p.E469in_frame_insDK	1.000:1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	65	0	0	94	21	18.26	-	-	-	ATA	178928220	-	ATA	178928219	7	5	52	1	0	1	1	0	0	0	0	0	11987	1188	41	0	1435	0	PIK3CA	3	178928219	In_Frame_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09	11893363	178928219	19094211	17	2559										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	66	0	0	57	83	57.64	-	-	-	G	178952085	A	G	178952085	3	3	52	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0EV-01A-11W-A050-09	23866	178952085	19070345	18	2560										
DGKG	0	genome.wustl.edu	37	chr3	185986615	185986615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tccggcaccacacgcagtgcCgcgcggtgacactctggtag	13	15	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	3	185986615	185986615	C	T	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.1091	p.R364Q	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	106	0	0	43	57	57	-	-	-	T	185986615	C	T	185986615	3	4	52	1	0	0	0	0	1	0	0	0	4505	652	23	1	1340	1	DGKG	3	185986615	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	7034530	185986615	12035815	19	2561										
CCNG2	0	genome.wustl.edu	37	chr4	78080581	78080581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tgaagatttaaggagtttagCcaacttttttggatcttgca	9	5	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	4	78080581	78080581	C	T	SNP	CCNG2	ENST00000316355	human	ensembl	69_37n	1	known	missense	c.200	p.A67V	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNG2	HGNC	ENSG00000138764	146	0	0	116	30	20.27	-	-	-	T	78080581	C	T	78080581	3	4	52	1	0	0	0	0	1	0	0	0	2953	739	26	4	206	4	CCNG2	4	78080581	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		78080581	113073695	20	2562										
MYO10	0	genome.wustl.edu	37	chr5	16666900	16666900	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	atgagcttggccacatccacCacctgcccagggggaagcag	12	14	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	5	16666900	16666900	C	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	silent	c.6078	p.V2026	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	71	0	0	59	14	18.92	-	-	-	T	16666900	C	T	16666900	2	4	52	1	0	0	0	0	0	0	0	1	10134	581	21	4		4	MYO10	5	16666900	Silent	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		16666900	164248360	21	2563										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711927	140711927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gctggaccagaacgacaacgCgcccgagatcctgtaccccg	11	16	0	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	5	140711927	140711927	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.1676	p.A559V	0.077	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	39	0	0	51	19	26.76	-	-	-	T	140711927	C	T	140711927	3	4	52	1	0	0	0	0	1	0	0	0	11623	768	27	1	1678	1	PCDHGA1	5	140711927	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	124045027	140711927	40203333	22	2564										
OGDH	0	genome.wustl.edu	37	chr7	44747227	44747228	+	Frame_Shift_Ins	INS	-	-	C													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ctgaaggaggtgcagaagtaINSccccaatgctgagctggcct							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	7	44747227	44747228	-	C	INS	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	frame_shift_ins	c.2843_2844	p.N950fs	1.000:1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	50	0	0	41	6	12.77	-	-	-	C	44747228	-	C	44747227	7	5	52	1	0	1	1	0	0	0	0	0	10912	391	14	0	3098	0	OGDH	7	44747227	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09		44747227	114391436	23	2565										
ADCY1	0	genome.wustl.edu	37	chr7	45717647	45717647	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	accctgaagtacaaacatgtCgaacgggagcaaaaggtaag	11	8	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	7	45717647	45717647	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	silent	c.1785	p.V595	0.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	103	0	0	75	34	30.63	-	-	-	T	45717647	C	T	45717647	2	4	52	1	0	0	0	0	0	0	0	1	292	871	31	1		1	ADCY1	7	45717647	Silent	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	970420	45717647	113421016	24	2566										
GIMAP7	0	genome.wustl.edu	37	chr7	150217906	150217906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	atgtttttaataggatttggAagatgctttcagaaatatgg	10	2	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	7	150217906	150217906	A	G	SNP	GIMAP7	ENST00000313543	human	ensembl	69_37n	1	known	missense	c.844	p.K282E	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP7	HGNC	ENSG00000179144	26	0	0	60	12	16.44	-	-	-	G	150217906	A	G	150217906	3	3	52	1	0	0	0	0	1	0	0	0	6436	247	9	5	846	5	GIMAP7	7	150217906	Missense_Mutation	SNP	A	TCGA-A2-A0EV-01A-11W-A050-09	104500259	150217906	8920757	25	2567										
DPYS	0	genome.wustl.edu	37	chr8	105479017	105479018	+	Frame_Shift_Ins	INS	-	-	C													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cccgcagccccgcaggagcgINScccccgggaggcagcaggtc							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	8	105479017	105479018	-	C	INS	DPYS	ENST00000351513	human	ensembl	69_37n	-1	known	frame_shift_ins	c.132_131	p.A45fs	0.000:0.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647	19	0	0	12	2	14.29	-	-	-	C	105479018	-	C	105479017	7	5	52	1	0	1	1	0	0	0	0	0	4781	1074	38	0	1463	0	DPYS	8	105479017	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09		105479017	40885005	26	2568										
HABP4	0	genome.wustl.edu	37	chr9	99228042	99228042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	atgtggagttcgaacctgggGatcgggtaaagataccaggt	15	6	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	9	99228042	99228042	G	A	SNP	HABP4	ENST00000375249	human	ensembl	69_37n	1	known	missense	c.725	p.G242E	0.963	pfam_HABP4_PAIRBP1-bd	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956	816	1	0.12	476	105	17.95	-	-	-	A	99228042	G	A	99228042	3	1	52	1	0	0	0	0	1	0	0	0	6990	1174	41	2	739	2	HABP4	9	99228042	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09		99228042	41985389	27	2569										
DCLRE1C	0	genome.wustl.edu	37	chr10	14951002	14951002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	catctgtgatttcatcatttCttttaaagaatacttcccac	3	10	4	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	10	14951002	14951002	C	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.1484	p.R495T	0.140	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	108	0	0	97	36	26.28	-	-	-	G	14951002	C	G	14951002	3	3	52	1	0	0	0	0	1	0	0	0	4327	913	32	2	598	2	DCLRE1C	10	14951002	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		14951002	120583745	28	2570										
OR6A2	0	genome.wustl.edu	37	chr11	6816119	6816119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cagagaccaacttgttggtgTcaaaagctgagagtgccttt	11	8	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	6816119	6816119	T	C	SNP	OR6A2	ENST00000332601	human	ensembl	69_37n	-1	known	missense	c.821	p.D274G	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	104	0	0	107	26	19.55	-	-	-	C	6816119	T	C	6816119	3	2	52	1	0	0	0	0	1	0	0	0	11259	1667	58	5	166	5	OR6A2	11	6816119	Missense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09		6816119	128190397	29	2571										
GYLTL1B	0	genome.wustl.edu	37	chr11	45948372	45948373	+	Frame_Shift_Ins	INS	-	-	C													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tcctgccccatgaaccgccaINScccccccggcctcacgatgt							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	45948372	45948373	-	C	INS	GYLTL1B	ENST00000325468	human	ensembl	69_37n	1	known	frame_shift_ins	c.1275_1276	p.R427fs	0.002:0.023	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905	25	0	0	11	4	26.67	-	-	-	C	45948373	-	C	45948372	7	5	52	1	0	1	1	0	0	0	0	0	6958	146	6	0	1309	0	GYLTL1B	11	45948372	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09	39132253	45948372	89058144	30	2572										
RSF1	0	genome.wustl.edu	37	chr11	77412285	77412285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tttagggtttctaggtctacTtttttcacagactggccacc	8	10	3	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	77412285	77412285	T	G	SNP	RSF1	ENST00000308488	human	ensembl	69_37n	-1	known	missense	c.1989	p.K663N	0.002	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649	93	0	0	92	22	19.3	-	-	-	G	77412285	T	G	77412285	3	3	52	1	0	0	0	0	1	0	0	0	13785	1606	56	5	2380	5	RSF1	11	77412285	Missense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09	31463913	77412285	57594231	31	2573										
HSPA8	0	genome.wustl.edu	37	chr11	122930605	122930605	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ttgaccattcggttgtcaaaAtcttctccacccaagtgggt	8	11	3	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	122930605	122930605	A	C	SNP	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	missense	c.696	p.D232E	0.997	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	80	0	0	51	7	12.07	-	-	-	C	122930605	A	C	122930605	3	2	52	1	0	0	0	0	1	0	0	0	7469	98	4	5	1264	5	HSPA8	11	122930605	Missense_Mutation	SNP	A	TCGA-A2-A0EV-01A-11W-A050-09	45518320	122930605	12075911	32	2574										
ESAM	0	genome.wustl.edu	37	chr11	124626494	124626494	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cctagatttgccttgtttgtCttgcacattcacggagcagc	9	11	2	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	124626494	124626494	C	T	SNP	ESAM	ENST00000278927	human	ensembl	69_37n	-1	known	missense	c.394	p.D132N	0.006	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ESAM	HGNC	ENSG00000149564	82	0	0	38	9	19.15	-	-	-	T	124626494	C	T	124626494	3	4	52	1	0	0	0	0	1	0	0	0	5284	913	32	2	798	2	ESAM	11	124626494	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	1695889	124626494	10380022	33	2575										
HYLS1	0	genome.wustl.edu	37	chr11	125769927	125769927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ggtattttgagtacaaacggGactgggactcaatacgttta	11	6	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	11	125769927	125769927	G	A	SNP	HYLS1	ENST00000356438	human	ensembl	69_37n	1	known	missense	c.664	p.D222N	1.000	NULL	NULL	-	no_errors	HYLS1	HGNC	ENSG00000198331	91	0	0	71	24	25	-	-	-	A	125769927	G	A	125769927	3	1	52	1	0	0	0	0	1	0	0	0	7523	1174	41	2	666	2	HYLS1	11	125769927	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	1143433	125769927	9236589	34	2576										
CLEC6A	0	genome.wustl.edu	37	chr12	8618227	8618227	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	caacacagaagcagagcaggTactgtttccatttaaaattt	7	8	0	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	12	8618227	8618227	T	C	SNP	CLEC6A	ENST00000382073	human	ensembl	69_37n	1	known	splice_site	c.369+2	e4+2	0.946	-	-	-	no_errors	CLEC6A	HGNC	ENSG00000205846	99	0	0	74	25	25.25	-	-	-	C	8618227	T	C	8618227	5	2	52	1	0	0	0	0	0	0	1	0	3550	1652	57	5	385	5	CLEC6A	12	8618227	Splice_Site	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09		8618227	125233668	35	2577										
HOXC4	0	genome.wustl.edu	37	chr12	54448689	54448689	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tcgaggacagcctatacccgGcagcaagtcctggaattaga	11	11	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	12	54448689	54448689	G	C	SNP	HOXC4	ENST00000303406	human	ensembl	69_37n	1	known	silent	c.495	p.R165	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_antennapedia	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	HGNC	ENSG00000198353	33	0	0	47	8	14.04	-	-	-	C	54448689	G	C	54448689	2	2	52	1	0	0	0	0	0	0	0	1	7364	1190	42	4		4	HOXC4	12	54448689	Silent	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	45830462	54448689	79403206	36	2578										
OR6C76	0	genome.wustl.edu	37	chr12	55820958	55820959	+	Frame_Shift_Ins	INS	-	-	A													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ttctgagaaagatttcccacINSaaaaaaaaaaaacactgatt							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	12	55820958	55820959	-	A	INS	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	frame_shift_ins	c.921_922	p.K311fs	0.003:0.016	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	12	0	0	20	3	13.04	-	-	-	A	55820959	-	A	55820958	7	5	52	1	0	1	1	0	0	0	0	0	11273	477	17	0	923	0	OR6C76	12	55820958	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09	1372269	55820958	78030937	37	2579										
TMCC3	0	genome.wustl.edu	37	chr12	94965266	94965266	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ggatatggtcccagtttttaCaaaatatagcaagaagagtc	9	6	0	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	12	94965266	94965266	C	G	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.1379	p.C460S	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	216	0	0	201	35	14.77	-	-	-	G	94965266	C	G	94965266	3	3	52	1	0	0	0	0	1	0	0	0	16089	478	17	4	58	4	TMCC3	12	94965266	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	39144308	94965266	38886629	38	2580										
UBE3B	0	genome.wustl.edu	37	chr12	109959017	109959017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gggggtcatccgtgtgaagtTtgtcaatgacctcggggtgg	17	7	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	12	109959017	109959017	T	C	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.2141	p.F714S	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	124	0	0	50	29	36.71	-	-	-	C	109959017	T	C	109959017	3	2	52	1	0	0	0	0	1	0	0	0	16977	1841	64	5	2211	5	UBE3B	12	109959017	Missense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09	14993751	109959017	23892878	39	2581										
SPG11	0	genome.wustl.edu	37	chr15	44864968	44864968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gtcttgacacagagtggtcaGctgaagaaatgtctggcttt	12	7	3	4			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	15	44864968	44864968	G	C	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	missense	c.6256	p.L2086V	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	159	0	0	125	16	11.27	-	-	-	C	44864968	G	C	44864968	3	2	52	1	0	0	0	0	1	0	0	0	15132	962	34	4	1107	4	SPG11	15	44864968	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09		44864968	57666424	40	2582										
ZNF609	0	genome.wustl.edu	37	chr15	64792134	64792134	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	aagagcaagaaggagagaagCgaaggagtggggacttgttc	17	4	0	3			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	15	64792134	64792134	C	T	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	silent	c.516	p.S172	0.987	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	160	0	0	163	65	28.38	-	-	-	T	64792134	C	T	64792134	2	4	52	1	0	0	0	0	0	0	0	1	18131	767	27	1		1	ZNF609	15	64792134	Silent	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	19927166	64792134	37739258	41	2583										
CLEC16A	0	genome.wustl.edu	37	chr16	11137916	11137916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	agaaagtgttcaccttgtacGacatttttataaggtaattg	8	5	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	16	11137916	11137916	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.1802	p.R601Q	0.951	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	100	0	0	83	16	16.16	-	-	-	A	11137916	G	A	11137916	3	1	52	1	0	0	0	0	1	0	0	0	3530	1058	37	1	1860	1	CLEC16A	16	11137916	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09		11137916	79216837	42	2584										
AP1G1	0	genome.wustl.edu	37	chr16	71792720	71792720	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cagtttgttaccgttttattGagacatccaaatctttaaga	6	7	1	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	16	71792720	71792720	G	A	SNP	AP1G1	ENST00000433195	human	ensembl	69_37n	-1	known	missense	c.1148	p.S383L	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747	113	0	0	88	16	15.24	-	-	-	A	71792720	G	A	71792720	3	1	52	1	0	0	0	0	1	0	0	0	733	1294	45	2	1441	2	AP1G1	16	71792720	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	60654804	71792720	18562033	43	2585										
NCOR1	0	genome.wustl.edu	37	chr17	16024444	16024444	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	agcactggcagctgcagcttCgtttgtcatggacctggtga	13	10	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	17	16024444	16024444	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.1774	p.E592*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	68	0	0	35	36	50	-	-	-	A	16024444	C	A	16024444	4	1	52	1	0	0	0	0	0	1	0	0	10307	893	31	3	5672	3	NCOR1	17	16024444	Nonsense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		16024444	65170766	44	2586										
ITGB4	0	genome.wustl.edu	37	chr17	73723581	73723581	+	Frame_Shift_Del	DEL	A	A	-													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tggagagcagcttccaaatcAcagaggtgcctggtgtgggg							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	17	73723581	73723581	A	-	DEL	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	frame_shift_del	c.259	p.T87fs	0.001	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	44	0	0	23	58	69.88	-	-	-	-	73723581	A	-	73723581	7	5	52	1	0	1	0	1	0	0	0	0	7951	159	6	0	269	0	ITGB4	17	73723581	Frame_Shift_Del	DEL	A	TCGA-A2-A0EV-01A-11W-A050-09	57699137	73723581	7471629	45	2587										
SMAD7	0	genome.wustl.edu	37	chr18	46474794	46474795	+	Frame_Shift_Ins	INS	-	-	G													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tcgggtatctggagtaaggaINSggggggggagactctgaaat							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	18	46474794	46474795	-	G	INS	SMAD7	ENST00000262158	human	ensembl	69_37n	-1	known	frame_shift_ins	c.627_626	p.P210fs	1.000:1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD7	HGNC	ENSG00000101665	18	0	0	9	3	25	-	-	-	G	46474795	-	G	46474794	7	5	52	1	0	1	1	0	0	0	0	0	14852	291	11	0	665	0	SMAD7	18	46474794	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09		46474794	31602454	46	2588										
PCP2	0	genome.wustl.edu	37	chr19	7696695	7696695	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gctcgtttctgtgctccgtcCtgtggatgaagaggggtcag	15	9	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	7696695	7696695	C	T	SNP	PCP2	ENST00000311069	human	ensembl	69_37n	-1	known	splice_site	c.292-1	e4-1	0.999	-	-	-	no_errors	PCP2	HGNC	ENSG00000174788	71	0	0	55	17	23.61	-	-	-	T	7696695	C	T	7696695	5	4	52	1	0	0	0	0	0	0	1	0	11670	695	24	4	123	4	PCP2	19	7696695	Splice_Site	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		7696695	51432288	47	2589										
UBA2	0	genome.wustl.edu	37	chr19	34960012	34960012	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tcttcaaataatgccgacgtCagtgaagaagagagaagccg	11	8	3	4			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	34960012	34960012	C	T	SNP	UBA2	ENST00000246548	human	ensembl	69_37n	1	known	silent	c.1809	p.V603	0.011	NULL	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261	84	0	0	78	28	26.17	-	-	-	T	34960012	C	T	34960012	2	4	52	1	0	0	0	0	0	0	0	1	16925	813	29	2		2	UBA2	19	34960012	Silent	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	27263317	34960012	24168971	48	2590										
ZNF420	0	genome.wustl.edu	37	chr19	37618814	37618814	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cataccggtgagaaaccctaTgaatgtaaggaatgtggaaa	11	6	0	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	37618814	37618814	T	G	SNP	ZNF420	ENST00000337995	human	ensembl	69_37n	1	known	nonsense	c.921	p.Y307*	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050	75	0	0	96	26	21.14	-	-	-	G	37618814	T	G	37618814	4	3	52	1	0	0	0	0	0	1	0	0	17993	1471	51	5	931	5	ZNF420	19	37618814	Nonsense_Mutation	SNP	T	TCGA-A2-A0EV-01A-11W-A050-09	2658802	37618814	21510169	49	2591										
FCGBP	0	genome.wustl.edu	37	chr19	40368696	40368696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ggggttgcggtccatgttacCgcagagcccgcacactgcgc	14	14	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	40368696	40368696	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.12652	p.G4218S	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	296	0	0	193	44	18.26	-	-	-	T	40368696	C	T	40368696	3	4	52	1	0	0	0	0	1	0	0	0	5824	652	23	1	3601	1	FCGBP	19	40368696	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	2749882	40368696	18760287	50	2592										
CRX	0	genome.wustl.edu	37	chr19	48343000	48343000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	acccctacctttctcccatgGtgccccagctagggggcccg	10	18	1	0			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	48343000	48343000	G	A	SNP	CRX	ENST00000221996	human	ensembl	69_37n	1	known	missense	c.676	p.V226M	1.000	pfam_Otx_TF_C	pfam_Homeodomain,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	CRX	HGNC	ENSG00000105392	113	0	0	129	22	14.57	-	-	-	A	48343000	G	A	48343000	3	1	52	1	0	0	0	0	1	0	0	0	3932	1261	44	4	686	4	CRX	19	48343000	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	7974304	48343000	10785983	51	2593										
PIH1D1	0	genome.wustl.edu	37	chr19	49949895	49949896	+	Frame_Shift_Ins	INS	-	-	C													0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	gatgatacagctgctgggggINSccccccatcaccaggcggtt							TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	49949895	49949896	-	C	INS	PIH1D1	ENST00000262265	human	ensembl	69_37n	-1	known	frame_shift_ins	c.744_743	p.Q250fs	0.990:0.994	NULL	NULL	-	no_errors	PIH1D1	HGNC	ENSG00000104872	45	0	0	35	4	10.26	-	-	-	C	49949896	-	C	49949895	7	5	52	1	0	1	1	0	0	0	0	0	11980	1190	42	0	136	0	PIH1D1	19	49949895	Frame_Shift_Ins	INS	-	TCGA-A2-A0EV-01A-11W-A050-09	1606895	49949895	9179088	52	2594										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56734011	56734011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	tgtcagtcctgggttctcttCcctgttttccttcagatcct	7	13	3	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	56734011	56734011	C	T	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	0.257	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	478	0	0	332	51	13.28	-	-	-	T	56734011	C	T	56734011	3	4	52	1	0	0	0	0	1	0	0	0	18329	864	30	2	810	2	ZSCAN5A	19	56734011	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	6784116	56734011	2394972	53	2595										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56735006	56735006	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	cctcacacactcacctgcctCctggacaatgcagggaccct	7	18	2	0			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	19	56735006	56735006	C	G	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.582	p.R194S	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	85	0	0	67	9	11.84	-	-	-	G	56735006	C	G	56735006	3	3	52	1	0	0	0	0	1	0	0	0	18329	854	30	2	920	2	ZSCAN5A	19	56735006	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09	995	56735006	2393977	54	2596										
TGIF2	0	genome.wustl.edu	37	chr20	35219587	35219587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ggagctggagtctcccaagcCcctggtgacccctggtagca	13	14	1	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	20	35219587	35219587	C	T	SNP	TGIF2	ENST00000373872	human	ensembl	69_37n	1	known	missense	c.467	p.P156L	0.973	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TGIF2	HGNC	ENSG00000118707	45	0	0	40	14	25	-	-	-	T	35219587	C	T	35219587	3	4	52	1	0	0	0	0	1	0	0	0	15921	623	22	4	473	4	TGIF2	20	35219587	Missense_Mutation	SNP	C	TCGA-A2-A0EV-01A-11W-A050-09		35219587	27805933	55	2597										
ZMYND8	0	genome.wustl.edu	37	chr20	45867732	45867732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	ctgggcttcctgtggcggcgGgggccggggccgtgacggtg	22	11	0	1			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	20	45867732	45867732	G	A	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.2456	p.P819L	0.830	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	74	0	0	38	14	26.42	-	-	-	A	45867732	G	A	45867732	3	1	52	1	0	0	0	0	1	0	0	0	17807	1232	43	4	1167	4	ZMYND8	20	45867732	Missense_Mutation	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09	10648145	45867732	17157788	56	2598										
NAP1L3	0	genome.wustl.edu	37	chrX	92927934	92927934	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.871886716160037	1.01585314977055	1.15130023640662	0.986828774062817	0.242424242424242	0.862148760330577	0	atgaattgcttttaagaacaGggtatctaccttgtcacatt	7	7	2	2			TCGA-A2-A0EV-01A-11W-A050-09	TCGA-A2-A0EV-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9433bf4f-23ba-4fe7-9503-1ad243d74225	633b376d-d59f-4f31-8d1a-0b1d89650a8e	X	92927934	92927934	G	A	SNP	NAP1L3	ENST00000373079	human	ensembl	69_37n	-1	known	silent	c.370	p.L124	0.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310	45	0	0	33	4	10.81	-	-	-	A	92927934	G	A	92927934	2	1	52	1	0	0	0	0	0	0	0	1	10230	991	35	4		4	NAP1L3	23	92927934	Silent	SNP	G	TCGA-A2-A0EV-01A-11W-A050-09		92927934	62342626	57	2599										
CACNA1E	0	genome.wustl.edu	37	chr1	181726119	181726119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	gaggcccaagccgcagcaacCgcatggagatgtctatcttt	11	12	2	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	1	181726119	181726119	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.4186	p.R1396C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	261	0	0	510	115	18.4	-	-	-	T	181726119	C	T	181726119	3	4	53	1	0	0	0	0	1	0	0	0	2567	652	23	1	4304	1	CACNA1E	1	181726119	Missense_Mutation	SNP	C	TCGA-A2-A0EW-01A-21D-A10Y-09		181726119	67524502	1	2600										
TTN	0	genome.wustl.edu	37	chr2	179467306	179467306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	aacttctgggcaagaaggtgGccccggtggaactaataaca	12	9	1	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	2	179467306	179467306	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47119	p.P15707T	0.922	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	78	0	0	180	55	23.4	-	-	-	T	179467306	G	T	179467306	3	4	53	1	0	0	0	0	1	0	0	0	16832	1203	42	4	53190	4	TTN	2	179467306	Missense_Mutation	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09		179467306	63732067	2	2601										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	140	42	23.08	-	-	-	G	178936095	A	G	178936095	3	3	53	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-A2-A0EW-01A-21D-A10Y-09		178936095	19086335	3	2602										
ARHGAP18	0	genome.wustl.edu	37	chr6	129937374	129937374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	tactttttgaaagatcaaggGtattcgcattcctggtactt	8	7	1	2			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	6	129937374	129937374	G	A	SNP	ARHGAP18	ENST00000275189	human	ensembl	69_37n	-1	known	missense	c.1027	p.P343S	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	144	0	0	307	74	19.42	-	-	-	A	129937374	G	A	129937374	3	1	53	1	0	0	0	0	1	0	0	0	870	1261	44	4	1000	4	ARHGAP18	6	129937374	Missense_Mutation	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09		129937374	41177693	4	2603										
CTGF	0	genome.wustl.edu	37	chr6	132270681	132270681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	gcttggagattttgggagtaCggatgcactttttgcccttc	12	8	0	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	6	132270681	132270681	C	T	SNP	CTGF	ENST00000367976	human	ensembl	69_37n	-1	known	missense	c.773	p.R258H	1.000	pfam_Cys_knot,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523	110	0	0	187	41	17.98	-	-	-	T	132270681	C	T	132270681	3	4	53	1	0	0	0	0	1	0	0	0	4040	536	19	1	280	1	CTGF	6	132270681	Missense_Mutation	SNP	C	TCGA-A2-A0EW-01A-21D-A10Y-09	2333307	132270681	38844386	5	2604										
DDC	0	genome.wustl.edu	37	chr7	50605566	50605566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	ctcccaccttacctggatcaCtcctcccccttctccagctt	3	21	2	0			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	7	50605566	50605566	C	T	SNP	DDC	ENST00000357936	human	ensembl	69_37n	-1	known	missense	c.427	p.V143M	1.000	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437	223	0	0	402	93	18.75	-	-	-	T	50605566	C	T	50605566	3	4	53	1	0	0	0	0	1	0	0	0	4356	565	20	4	1059	4	DDC	7	50605566	Missense_Mutation	SNP	C	TCGA-A2-A0EW-01A-21D-A10Y-09		50605566	108533097	6	2605										
HIPK2	0	genome.wustl.edu	37	chr7	139257730	139257730	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	agtgggtatccagtgtagacGgtggaggctggcgaggcgct	19	7	0	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	7	139257730	139257730	G	C	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	silent	c.3540	p.T1180	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	152	0	0	199	58	22.57	-	-	-	C	139257730	G	C	139257730	2	2	53	1	0	0	0	0	0	0	0	1	7168	1103	39	3		3	HIPK2	7	139257730	Silent	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09	88652164	139257730	19880933	7	2606										
RAD21	0	genome.wustl.edu	37	chr8	117862955	117862955	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	ctgacagatatttggaggttCttctgggggaagctctacag	13	7	3	2			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	8	117862955	117862955	C	G	SNP	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	missense	c.1522	p.E508Q	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	228	0	0	487	126	20.55	-	-	-	G	117862955	C	G	117862955	3	3	53	1	0	0	0	0	1	0	0	0	13064	922	32	2	385	2	RAD21	8	117862955	Missense_Mutation	SNP	C	TCGA-A2-A0EW-01A-21D-A10Y-09		117862955	28501067	8	2607										
NARS2	0	genome.wustl.edu	37	chr11	78204212	78204212	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	aattttcagctcggaaggtcGgaccaaaggtaaacacttga	10	8	1	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	11	78204212	78204212	G	C	SNP	NARS2	ENST00000281038	human	ensembl	69_37n	-1	known	missense	c.719	p.P240R	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS2	HGNC	ENSG00000137513	43	0	0	189	31	13.96	-	-	-	C	78204212	G	C	78204212	3	2	53	1	0	0	0	0	1	0	0	0	10243	1116	39	3	746	3	NARS2	11	78204212	Missense_Mutation	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09		78204212	56802304	9	2608										
CIT	0	genome.wustl.edu	37	chr12	120156088	120156088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	cctttctgcggctggatggcGgggccagcaggctcatggca	16	12	2	0			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	12	120156088	120156088	G	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.4004	p.P1335L	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	80	0	0	127	27	17.53	-	-	-	A	120156088	G	A	120156088	3	1	53	1	0	0	0	0	1	0	0	0	3468	1116	39	1	2147	1	CIT	12	120156088	Missense_Mutation	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09		120156088	13695807	10	2609										
OR4N4	0	genome.wustl.edu	37	chr15	22382595	22382595	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	taccttatcatcctccctggAaattttctcattattttcac	2	12	3	0			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	15	22382595	22382595	A	G	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	silent	c.123	p.G41	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	478	0	0	1096	134	10.89	-	-	-	G	22382595	A	G	22382595	2	3	53	1	0	0	0	0	0	0	0	1	11151	233	9	5		5	OR4N4	15	22382595	Silent	SNP	A	TCGA-A2-A0EW-01A-21D-A10Y-09		22382595	80148797	11	2610										
ZNF45	0	genome.wustl.edu	37	chr19	44418767	44418767	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	actcctcacatttatagggtTtctctcccgtatgaactatc	5	12	2	1			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	19	44418767	44418767	T	C	SNP	ZNF45	ENST00000269973	human	ensembl	69_37n	-1	known	missense	c.821	p.K274R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC	ENSG00000124459	127	0	0	222	56	20.14	-	-	-	C	44418767	T	C	44418767	3	2	53	1	0	0	0	0	1	0	0	0	18017	1841	64	5	1231	5	ZNF45	19	44418767	Missense_Mutation	SNP	T	TCGA-A2-A0EW-01A-21D-A10Y-09		44418767	14710216	12	2611										
CTAG2	0	genome.wustl.edu	37	chrX	153881613	153881613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.957008104689917	0.851851851851852	2.55555555555556	0	1	1	0	ccatgcggaccccgcggggcGcctcctctcggccccgaggc	14	20	1	0			TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a045a04e-4f7b-4f9a-a733-47ad24475496	7ada2974-e227-405b-82c2-53909e722858	X	153881613	153881613	G	A	SNP	CTAG2	ENST00000369585	human	ensembl	69_37n	-1	known	silent	c.177	p.G59	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890	11	0	0	70	28	28.57	-	-	-	A	153881613	G	A	153881613	2	1	53	1	0	0	0	0	0	0	0	1	4023	1074	38	1		1	CTAG2	23	153881613	Silent	SNP	G	TCGA-A2-A0EW-01A-21D-A10Y-09		153881613	1388947	13	2612										
PRDM16	0	genome.wustl.edu	37	chr1	3301795	3301795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	cagctggctcaagtacatccGtgtggcgtgctcctgcgatg	13	12	1	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	3301795	3301795	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	missense	c.518	p.R173H	0.991	smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	24	0	0	8	5	38.46	-	-	-	A	3301795	G	A	3301795	3	1	54	1	0	0	0	0	1	0	0	0	12538	1145	40	1	532	1	PRDM16	1	3301795	Missense_Mutation	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09		3301795	245948826	1	2613										
KIAA2013	0	genome.wustl.edu	37	chr1	11985345	11985345	+	Frame_Shift_Del	DEL	T	T	-													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ccaagagctccagcatttccTtccgtgccaagtcctgcagc							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	11985345	11985345	T	-	DEL	KIAA2013	ENST00000376576	human	ensembl	69_37n	-1	known	frame_shift_del	c.950	p.K317fs	1.000	pfam_DUF2152	pfam_DUF2152	-	no_errors	KIAA2013	HGNC	ENSG00000116685	54	0	0	30	4	11.76	-	-	-	-	11985345	T	-	11985345	7	5	54	1	0	1	0	1	0	0	0	0	8319	1609	56	0	966	0	KIAA2013	1	11985345	Frame_Shift_Del	DEL	T	TCGA-A2-A0EX-01A-21W-A050-09	8683550	11985345	237265276	2	2614										
UBR4	0	genome.wustl.edu	37	chr1	19439358	19439359	+	In_Frame_Ins	INS	-	-	CAA													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	tctttgcgcgaagcaaagacINStttctaagaacaaaaaggca							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	19439358	19439359	-	CAA	INS	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	in_frame_ins	c.11461_11460	p.3820in_frame_insL	1.000:1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	133	0	0	112	22	16.42	-	-	-	CAA	19439359	-	CAA	19439358	7	5	54	1	0	1	1	0	0	0	0	0	17001	565	20	0	4206	0	UBR4	1	19439358	In_Frame_Ins	INS	-	TCGA-A2-A0EX-01A-21W-A050-09	7454013	19439358	229811263	3	2615										
SHE	0	genome.wustl.edu	37	chr1	154461722	154461722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	caggaggtccttggaactccGtcttttggccaaggtctctg	12	11	2	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	154461722	154461722	G	A	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	missense	c.829	p.R277W	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	36	0	0	25	6	19.35	-	-	-	A	154461722	G	A	154461722	3	1	54	1	0	0	0	0	1	0	0	0	14365	1144	40	1	674	1	SHE	1	154461722	Missense_Mutation	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09	135022364	154461722	94788899	4	2616										
PIKFYVE	0	genome.wustl.edu	37	chr2	209212650	209212650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	aaaagccccgatctctcttcCcagaagagagagaccttacg	8	13	2	3			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	2	209212650	209212650	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	silent	c.5277	p.S1759	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	57	0	0	56	9	13.85	-	-	-	T	209212650	C	T	209212650	2	4	54	1	0	0	0	0	0	0	0	1	11998	610	22	4		4	PIKFYVE	2	209212650	Silent	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		209212650	33986723	5	2617										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	58	21	26.58	-	-	-	A	178936091	G	A	178936091	3	1	54	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09		178936091	19086339	6	2618										
WHSC1	0	genome.wustl.edu	37	chr4	1954980	1954981	+	Frame_Shift_Ins	INS	-	-	G													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	aggagttgcttgattttagtINSggctcagaactgcaatttaa							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	4	1954980	1954981	-	G	INS	WHSC1	ENST00000382888	human	ensembl	69_37n	1	known	frame_shift_ins	c.111_112	p.S38fs	0.000:0.001	NULL	pfam_SET_dom,pfam_PWWP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_PWWP,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	WHSC1	HGNC	ENSG00000109685	22	0	0	12	5	29.41	-	-	-	G	1954981	-	G	1954980	7	5	54	1	0	1	1	0	0	0	0	0	17459	1711	59	0		0	WHSC1	4	1954980	Frame_Shift_Ins	INS	-	TCGA-A2-A0EX-01A-21W-A050-09		1954980	189199296	7	2619										
EPB41L4A	0	genome.wustl.edu	37	chr5	111506043	111506043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ttaattgttcttcggacaatCcggatggatccacaagttct	8	9	2	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	5	111506043	111506043	C	T	SNP	EPB41L4A	ENST00000261486	human	ensembl	69_37n	-1	known	missense	c.1694	p.G565E	0.993	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	205	0	0	267	32	10.7	-	-	-	T	111506043	C	T	111506043	3	4	54	1	0	0	0	0	1	0	0	0	5192	855	30	2	382	2	EPB41L4A	5	111506043	Missense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		111506043	69409217	8	2620										
SNX3	0	genome.wustl.edu	37	chr6	108581992	108581992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	tgatttcgtaagtggtgaagCggccccggccgacccccacc	12	15	0	2			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	6	108581992	108581992	C	A	SNP	SNX3	ENST00000230085	human	ensembl	69_37n	-1	known	missense	c.134	p.R45L	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX3	HGNC	ENSG00000112335	61	0	0	26	6	18.75	-	-	-	A	108581992	C	A	108581992	3	1	54	1	0	0	0	0	1	0	0	0	14988	768	27	3	370	3	SNX3	6	108581992	Missense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		108581992	62533075	9	2621										
GRM1	0	genome.wustl.edu	37	chr6	146720226	146720226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	taaaaccaatcgtattgcacGcatcctggctggcagcaaga	9	11	0	1			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	6	146720226	146720226	G	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.2051	p.R684H	1.000	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	173	0	0	183	68	27.09	-	-	-	A	146720226	G	A	146720226	3	1	54	1	0	0	0	0	1	0	0	0	6847	1087	38	1	2077	1	GRM1	6	146720226	Missense_Mutation	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09	38138234	146720226	24394841	10	2622										
RNF19A	0	genome.wustl.edu	37	chr8	101300149	101300149	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	caattccatccaccccgccaTttagctcccttgatttacgt	4	16	0	1			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	8	101300149	101300149	T	G	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	missense	c.254	p.N85T	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	47	0	0	84	21	20	-	-	-	G	101300149	T	G	101300149	3	3	54	1	0	0	0	0	1	0	0	0	13556	1493	52	5	2298	5	RNF19A	8	101300149	Missense_Mutation	SNP	T	TCGA-A2-A0EX-01A-21W-A050-09		101300149	45063873	11	2623										
CYHR1	0	genome.wustl.edu	37	chr8	145689543	145689544	+	Frame_Shift_Ins	INS	-	-	A													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ggcgctgtgtatgcagggccINScggcagtaagcccagctgcc							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	8	145689543	145689544	-	A	INS	CYHR1	ENST00000306145	human	ensembl	69_37n	-1	known	frame_shift_ins	c.546_545	p.A183fs	0.996:0.993	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954	10	0	0	10	5	33.33	-	-	-	A	145689544	-	A	145689543	7	5	54	1	0	1	1	0	0	0	0	0	4171	610	22	0	891	0	CYHR1	8	145689543	Frame_Shift_Ins	INS	-	TCGA-A2-A0EX-01A-21W-A050-09	44389394	145689543	674479	12	2624										
EHMT1	0	genome.wustl.edu	37	chr9	140710464	140710464	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	atcttcgaatgcaaccacgcGtgctcctgctggaggaactg	11	12	1	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	9	140710464	140710464	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.3324	p.A1108	0.912	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	59	0	0	21	14	40	-	-	-	A	140710464	G	A	140710464	2	1	54	1	0	0	0	0	0	0	0	1	5018	1132	40	1		1	EHMT1	9	140710464	Silent	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09		140710464	502967	13	2625										
HK1	0	genome.wustl.edu	37	chr10	71154851	71154851	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ttgagaccaagtttctctctCagatcgagaggtgagtgggc	13	8	2	4			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	10	71154851	71154851	C	T	SNP	HK1	ENST00000448642	human	ensembl	69_37n	1	known	nonsense	c.2470	p.Q824*	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515	76	0	0	87	23	20.91	-	-	-	T	71154851	C	T	71154851	4	4	54	1	0	0	0	0	0	1	0	0	7241	827	29	2	2605	2	HK1	10	71154851	Nonsense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		71154851	64379896	14	2626										
NAV2	0	genome.wustl.edu	37	chr11	20136311	20136312	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	gatcgacaagcaagcagatgINSccccccagtgatgctgaagg							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	11	20136311	20136312	-	C	INS	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	frame_shift_ins	c.7311_7312	p.S2439fs	0.998:1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	108	1	0.92	62	7	10.14	-	-	-	C	20136312	-	C	20136311	7	5	54	1	0	1	1	0	0	0	0	0	10256	1319	46	0	7398	0	NAV2	11	20136311	Frame_Shift_Ins	INS	-	TCGA-A2-A0EX-01A-21W-A050-09		20136311	114870205	15	2627										
CSAD	0	genome.wustl.edu	37	chr12	53552385	53552385	+	Frame_Shift_Del	DEL	G	G	-													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ttggccacaaccacacggaaGaagttgccccgggtcccgtg							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	12	53552385	53552385	G	-	DEL	CSAD	ENST00000267085	human	ensembl	69_37n	-1	known	frame_shift_del	c.1473	p.F492fs	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CSAD	HGNC	ENSG00000139631	69	0	0	32	43	55.84	-	-	-	-	53552385	G	-	53552385	7	5	54	1	0	1	0	1	0	0	0	0	3955	933	33	0	93	0	CSAD	12	53552385	Frame_Shift_Del	DEL	G	TCGA-A2-A0EX-01A-21W-A050-09		53552385	80299510	16	2628										
ESPL1	0	genome.wustl.edu	37	chr12	53682322	53682323	+	Frame_Shift_Del	DEL	GT	GT	-													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	aaggcctgctctctccccagGtgggaagactccagctccgg							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	12	53682322	53682323	GT	-	DEL	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	frame_shift_del	c.4547_4548	p.G1517fs	0.126:0.120	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	33	0	0	6	14	70	-	-	-	-	53682323	GT	-	53682322	7	5	54	1	0	1	0	1	0	0	0	0	5290	1275	44	0	4621	0	ESPL1	12	53682322	Frame_Shift_Del	DEL	GT	TCGA-A2-A0EX-01A-21W-A050-09	129937	53682322	80169573	17	2629										
ALDH1L2	0	genome.wustl.edu	37	chr12	105445872	105445872	+	Frame_Shift_Del	DEL	A	A	-													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	taaaaaatagaaatacctatAcatcaatcttcctctttctc							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	12	105445872	105445872	A	-	DEL	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	frame_shift_del	c.1531	p.Y511fs	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	50	0	0	60	37	37.37	-	-	-	-	105445872	A	-	105445872	7	5	54	1	0	1	0	1	0	0	0	0	495	391	14	0	1288	0	ALDH1L2	12	105445872	Frame_Shift_Del	DEL	A	TCGA-A2-A0EX-01A-21W-A050-09	51763550	105445872	28406023	18	2630										
GPR56	0	genome.wustl.edu	37	chr16	57691314	57691314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	gtggaggtggacgccgtgcaCaagcactacctgagcctcct	13	13	0	1			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	16	57691314	57691314	C	A	SNP	GPR56	ENST00000379696	human	ensembl	69_37n	1	known	missense	c.1197	p.H399Q	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like	-	no_errors	GPR56	HGNC	ENSG00000205336	60	0	0	11	4	26.67	-	-	-	A	57691314	C	A	57691314	3	1	54	1	0	0	0	0	1	0	0	0	6750	477	17	4	1246	4	GPR56	16	57691314	Missense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		57691314	32663439	19	2631										
CDH1	0	genome.wustl.edu	37	chr16	68849628	68849628	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	aaatcacatcctacactgccCaggagccagacacatttatg	6	13	1	1			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	16	68849628	68849628	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1531	p.Q511*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	190	0	0	71	37	34.26	-	-	-	T	68849628	C	T	68849628	4	4	54	1	0	0	0	0	0	1	0	0	3124	595	21	4	1569	4	CDH1	16	68849628	Nonsense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09	11158314	68849628	21505125	20	2632										
KRTAP3-2	0	genome.wustl.edu	37	chr17	39155871	39155871	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	gaaggtggtgaggttgagggTctccaggcccggagttggct	19	7	1	2			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	17	39155871	39155871	T	A	SNP	KRTAP3-2	ENST00000391587	human	ensembl	69_37n	-1	known	missense	c.235	p.T79S	0.942	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-2	HGNC	ENSG00000212900	201	0	0	184	92	33.33	-	-	-	A	39155871	T	A	39155871	3	1	54	1	0	0	0	0	1	0	0	0	8600	1667	58	5	65	5	KRTAP3-2	17	39155871	Missense_Mutation	SNP	T	TCGA-A2-A0EX-01A-21W-A050-09		39155871	42039339	21	2633										
FTSJ3	0	genome.wustl.edu	37	chr17	61898202	61898202	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	gtttatggcccctttaccggTtgaaggagttatctatgagg	12	7	1	2			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	17	61898202	61898202	T	C	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	missense	c.2069	p.N690S	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	75	0	0	56	21	26.92	-	-	-	C	61898202	T	C	61898202	3	2	54	1	0	0	0	0	1	0	0	0	6138	1725	60	5	490	5	FTSJ3	17	61898202	Missense_Mutation	SNP	T	TCGA-A2-A0EX-01A-21W-A050-09	22742331	61898202	19297008	22	2634										
FXYD5	0	genome.wustl.edu	37	chr19	35649292	35649292	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	cacctctccaaccccaacctGgcctgctgatggtgagtagt	9	15	1	2			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	19	35649292	35649292	G	A	SNP	FXYD5	ENST00000342879	human	ensembl	69_37n	1	known	nonsense	c.188	p.W63*	0.000	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD5	HGNC	ENSG00000089327	173	0	0	144	39	21.2	-	-	-	A	35649292	G	A	35649292	4	1	54	1	0	0	0	0	0	1	0	0	6170	1357	47	4	198	4	FXYD5	19	35649292	Nonsense_Mutation	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09		35649292	23479691	23	2635										
PLEKHA4	0	genome.wustl.edu	37	chr19	49363612	49363612	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	tggacctctactcactagtcGtccccctccgcacgggaggc	10	17	2	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	19	49363612	49363612	G	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	silent	c.471	p.D157	0.157	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	105	0	0	36	12	25	-	-	-	A	49363612	G	A	49363612	2	1	54	1	0	0	0	0	0	0	0	1	12132	1136	40	1		1	PLEKHA4	19	49363612	Silent	SNP	G	TCGA-A2-A0EX-01A-21W-A050-09	13714320	49363612	9765371	24	2636										
HSPA12B	0	genome.wustl.edu	37	chr20	3721533	3721534	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	ccaggaaagctgcggcattgINScccccctcacaccctcgcag							TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	20	3721533	3721534	-	C	INS	HSPA12B	ENST00000254963	human	ensembl	69_37n	1	known	frame_shift_ins	c.115_116	p.L41fs	1.000:1.000	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622	76	0	0	23	3	11.54	-	-	-	C	3721534	-	C	3721533	7	5	54	1	0	1	1	0	0	0	0	0	7458	1319	46	0	121	0	HSPA12B	20	3721533	Frame_Shift_Ins	INS	-	TCGA-A2-A0EX-01A-21W-A050-09		3721533	59303987	25	2637										
PRND	0	genome.wustl.edu	37	chr20	4705447	4705447	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	actacgaggccaactactggCagttccccgatggcatccac	9	15	0	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	20	4705447	4705447	C	A	SNP	PRND	ENST00000305817	human	ensembl	69_37n	1	known	missense	c.250	p.Q84K	1.000	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864	56	0	0	37	13	26	-	-	-	A	4705447	C	A	4705447	3	1	54	1	0	0	0	0	1	0	0	0	12624	711	25	4	252	4	PRND	20	4705447	Missense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09	983914	4705447	58320073	26	2638										
PWP2	0	genome.wustl.edu	37	chr21	45528869	45528869	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.433574832052746	2.13586956521739	NA	2.13586956521739	0.1	0.5224358974359	0	tttgttttcttcacagttttCaaatttgctgggtacggtgt	9	6	3	0			TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	21	45528869	45528869	C	T	SNP	PWP2	ENST00000291576	human	ensembl	69_37n	1	known	missense	c.23	p.S8L	0.995	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945	85	0	0	106	71	40.11	-	-	-	T	45528869	C	T	45528869	3	4	54	1	0	0	0	0	1	0	0	0	12927	838	29	2	29	2	PWP2	21	45528869	Missense_Mutation	SNP	C	TCGA-A2-A0EX-01A-21W-A050-09		45528869	2601026	27	2639										
CHD5	0	genome.wustl.edu	37	chr1	6202326	6202326	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggcgcccacatctcaaactcGcgttcccagttgatgatggt	10	13	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	6202326	6202326	G	A	SNP	CHD5	ENST00000462991	human	ensembl	69_37n	-1	known	nonsense	c.445	p.R149*	0.368	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_DUF1086,pfam_DUF1087,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHD5	HGNC	ENSG00000116254	58	0	0	26	8	23.53	-	-	-	A	6202326	G	A	6202326	4	1	55	1	0	0	0	0	0	1	0	0	3357	1074	38	1	3674	1	CHD5	1	6202326	Nonsense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		6202326	243048295	1	2640										
SPEN	0	genome.wustl.edu	37	chr1	16260104	16260104	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgcattccatcattgaaagtGacccggtgaccccacccagc	8	15	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	16260104	16260104	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.7369	p.D2457N	0.999	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	205	0	0	50	56	52.34	-	-	-	A	16260104	G	A	16260104	3	1	55	1	0	0	0	0	1	0	0	0	15129	1290	45	2	7411	2	SPEN	1	16260104	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	10057778	16260104	232990517	2	2641			1	7		5	5	2217	G		1.725935e-09
SPEN	0	genome.wustl.edu	37	chr1	16260233	16260233	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcccccctactaaggtgacaGagtggatcacaaggcaggag	13	11	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	16260233	16260233	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.7498	p.E2500Q	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	78	0	0	21	20	48.78	-	-	-	C	16260233	G	C	16260233	3	2	55	1	0	0	0	0	1	0	0	0	15129	943	33	2	7540	2	SPEN	1	16260233	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	129	16260233	232990388	3	2642			1	7		5	5	2217	G		1.725935e-09
SPEN	0	genome.wustl.edu	37	chr1	16260482	16260482	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttgactctaaaaagcctttaGaagaaaaaacagcacctcca	5	10	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	16260482	16260482	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.7747	p.E2583K	0.915	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	55	0	0	14	15	50	-	-	-	A	16260482	G	A	16260482	3	1	55	1	0	0	0	0	1	0	0	0	15129	943	33	2	7789	2	SPEN	1	16260482	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	249	16260482	232990139	4	2643			1	7		5	5	2217	G		1.725935e-09
SPEN	0	genome.wustl.edu	37	chr1	16260814	16260814	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gctgggcccgtgaacgtcctGaaagggcctgtgaatgttct	14	10	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	16260814	16260814	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.8079	p.L2693	0.586	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	130	0	0	32	31	49.21	-	-	-	C	16260814	G	C	16260814	2	2	55	1	0	0	0	0	0	0	0	1	15129	1277	45	2		2	SPEN	1	16260814	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	332	16260814	232989807	5	2644			1	7		5	5	2217	G		1.725935e-09
SPEN	0	genome.wustl.edu	37	chr1	16262320	16262320	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tatactgtgccacgggatgtGaggatcatggtgcatccaca	12	9	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	16262320	16262320	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.9585	p.V3195	0.789	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	29	0	0	7	8	53.33	-	-	-	A	16262320	G	A	16262320	2	1	55	1	0	0	0	0	0	0	0	1	15129	1277	45	2		2	SPEN	1	16262320	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1506	16262320	232988301	6	2645			1	7		5	5	2217	G		1.725935e-09
ITGB3BP	0	genome.wustl.edu	37	chr1	63920061	63920061	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aaattcttacttagttctttGgttttctgcatttctctttt	4	7	4	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	63920061	63920061	G	A	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	silent	c.534	p.T178	0.994	pfam_NRIF3_coact_rcpt	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	122	0	0	100	29	22.48	-	-	-	A	63920061	G	A	63920061	2	1	55	1	0	0	0	0	0	0	0	1	7950	1335	47	4		4	ITGB3BP	1	63920061	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	47657741	63920061	185330560	7	2646										
PTGFRN	0	genome.wustl.edu	37	chr1	117484574	117484574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gggcgagatcctgttaaggcGgactgccaacgacgccgtgg	16	11	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	117484574	117484574	G	A	SNP	PTGFRN	ENST00000393203	human	ensembl	69_37n	1	known	missense	c.287	p.R96Q	0.119	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PTGFRN	HGNC	ENSG00000134247	87	0	0	45	9	16.36	-	-	-	A	117484574	G	A	117484574	3	1	55	1	0	0	0	0	1	0	0	0	12831	1116	39	1	293	1	PTGFRN	1	117484574	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	53564513	117484574	131766047	8	2647										
CHRNB2	0	genome.wustl.edu	37	chr1	154543986	154543986	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gacatcacgtatgacttcatCattcgccgcaagccgctctt	7	14	4	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	154543986	154543986	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	silent	c.687	p.I229	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	108	0	0	111	43	27.39	-	-	-	T	154543986	C	T	154543986	2	4	55	1	0	0	0	0	0	0	0	1	3420	816	29	2		2	CHRNB2	1	154543986	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	37059412	154543986	94706635	9	2648										
IGSF8	0	genome.wustl.edu	37	chr1	160063723	160063723	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tagggagctccagcctccacGgccaagtctgaccggattcc	11	15	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	160063723	160063723	G	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	silent	c.681	p.A227	0.021	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	166	1	0.6	66	11	14.1	-	-	-	C	160063723	G	C	160063723	2	2	55	1	0	0	0	0	0	0	0	1	7658	1103	39	3		3	IGSF8	1	160063723	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	5519737	160063723	89186898	10	2649										
MARK1	0	genome.wustl.edu	37	chr1	220835278	220835278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	accctaatgacatgatgagaGaaatccgaaaagtgttagat	9	6	0	5			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	220835278	220835278	G	C	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.2158	p.E720Q	1.000	superfamily_Kinase-assoc_KA1	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	74	0	0	91	30	24.39	-	-	-	C	220835278	G	C	220835278	3	2	55	1	0	0	0	0	1	0	0	0	9383	943	33	2	2228	2	MARK1	1	220835278	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	60771555	220835278	28415343	11	2650										
CDC42BPA	0	genome.wustl.edu	37	chr1	227216475	227216475	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atattctttactggagatctCaactgcgcagatagcatcca	7	10	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	227216475	227216475	C	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	nonsense	c.4210	p.E1404*	1.000	pfam_Citron,superfamily_WD40_repeat_dom,smart_Citron	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	112	0	0	123	16	11.43	-	-	-	A	227216475	C	A	227216475	4	1	55	1	0	0	0	0	0	1	0	0	3101	835	29	2	981	2	CDC42BPA	1	227216475	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	6381197	227216475	22034146	12	2651										
KIAA1383	0	genome.wustl.edu	37	chr1	232940809	232940809	+	Frame_Shift_Del	DEL	G	G	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	taactaactggctctgtttaGcatgggaaaggaaggagagt							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	232940809	232940809	G	-	DEL	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	frame_shift_del	c.40	p.A14fs	0.006	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	83	0	0	80	60	40.82	-	-	-	-	232940809	G	-	232940809	7	5	55	1	0	1	0	1	0	0	0	0	8280	971	34	0	42	0	KIAA1383	1	232940809	Frame_Shift_Del	DEL	G	TCGA-A2-A0EY-01A-11W-A050-09	5724334	232940809	16309812	13	2652										
PCNXL2	0	genome.wustl.edu	37	chr1	233121777	233121777	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgcaaggcaggtgccacgctCaggccaggagcccgtgccac	14	16	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	233121777	233121777	C	T	SNP	PCNXL2	ENST00000344698	human	ensembl	69_37n	-1	known	missense	c.2257	p.E753K	0.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	12	0	0	7	4	36.36	-	-	-	T	233121777	C	T	233121777	3	4	55	1	0	0	0	0	1	0	0	0	11665	841	29	2		2	PCNXL2	1	233121777	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	180968	233121777	16128844	14	2653										
CEP170	0	genome.wustl.edu	37	chr1	243349584	243349584	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agcttggtcttgatgcttttCagtagcctggaccttctgta	10	9	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	1	243349584	243349584	C	T	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.1249	p.E417K	0.994	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	128	0	0	132	105	44.3	-	-	-	T	243349584	C	T	243349584	3	4	55	1	0	0	0	0	1	0	0	0	3279	835	29	2	3583	2	CEP170	1	243349584	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	10227807	243349584	5901037	15	2654										
SMC6	0	genome.wustl.edu	37	chr2	17897524	17897524	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgcatgcttcacatctaattCttctctcctaaaaaacaaaa	2	11	4	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	17897524	17897524	C	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	nonsense	c.1432	p.E478*	1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	134	0	0	118	19	13.87	-	-	-	A	17897524	C	A	17897524	4	1	55	1	0	0	0	0	0	1	0	0	14876	922	32	2	1977	2	SMC6	2	17897524	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		17897524	225301849	16	2655										
LTBP1	0	genome.wustl.edu	37	chr2	33477830	33477830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtatgcaccctctgtctgttCacctcaccaagcagctctgc	7	16	5	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	33477830	33477830	C	T	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.2086	p.H696Y	1.000	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	187	0	0	136	87	38.5	-	-	-	T	33477830	C	T	33477830	3	4	55	1	0	0	0	0	1	0	0	0	9139	826	29	2	2183	2	LTBP1	2	33477830	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	15580306	33477830	209721543	17	2656										
STRN	0	genome.wustl.edu	37	chr2	37076895	37076895	+	Frame_Shift_Del	DEL	A	A	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggccattgggatcaactgctAaacttgtaacagcttctagg							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	37076895	37076895	A	-	DEL	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	frame_shift_del	c.2135	p.L712fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	162	0	0	153	26	14.44	-	-	-	-	37076895	A	-	37076895	7	5	55	1	0	1	0	1	0	0	0	0	15420	372	13	0	215	0	STRN	2	37076895	Frame_Shift_Del	DEL	A	TCGA-A2-A0EY-01A-11W-A050-09	3599065	37076895	206122478	18	2657										
PELI1	0	genome.wustl.edu	37	chr2	64321937	64321937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atgaaaagtatgagtaccatGaggaagtgggatctgggacc	14	5	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	64321937	64321937	G	A	SNP	PELI1	ENST00000358912	human	ensembl	69_37n	-1	known	missense	c.1156	p.H386Y	1.000	pfam_Pellino	pfam_Pellino	-	no_errors	PELI1	HGNC	ENSG00000197329	129	0	0	95	51	34.93	-	-	-	A	64321937	G	A	64321937	3	1	55	1	0	0	0	0	1	0	0	0	11794	1290	45	2	104	2	PELI1	2	64321937	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	27245042	64321937	178877436	19	2658										
MTHFD2	0	genome.wustl.edu	37	chr2	74425784	74425784	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggtctatggctgcgacttctCtaatgtctgctttggctgcc	11	11	3	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	74425784	74425784	C	T	SNP	MTHFD2	ENST00000394053	human	ensembl	69_37n	1	known	silent	c.16	p.L6	0.000	NULL	pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD2	HGNC	ENSG00000065911	21	0	0	18	4	18.18	-	-	-	T	74425784	C	T	74425784	2	4	55	1	0	0	0	0	0	0	0	1	10001	912	32	2		2	MTHFD2	2	74425784	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	10103847	74425784	168773589	20	2659										
SFTPB	0	genome.wustl.edu	37	chr2	85892750	85892750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgtgtgtgaggcccaggcctCgcctggagggccccgggcag	18	13	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	85892750	85892750	C	T	SNP	SFTPB	ENST00000428225	human	ensembl	69_37n	-1	novel	missense	c.550	p.E184K	0.000	NULL	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SFTPB	HGNC	ENSG00000168878	58	0	0	72	12	14.29	-	-	-	T	85892750	C	T	85892750	3	4	55	1	0	0	0	0	1	0	0	0	14279	871	31	1	608	1	SFTPB	2	85892750	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	11466966	85892750	157306623	21	2660										
PROM2	0	genome.wustl.edu	37	chr2	95952919	95952919	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctagccaatgtcacctacctGaaaggagagctgcctgcctg	10	13	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	95952919	95952919	G	A	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	silent	c.2133	p.L711	0.013	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	82	0	0	54	22	28.21	-	-	-	A	95952919	G	A	95952919	2	1	55	1	0	0	0	0	0	0	0	1	12637	1277	45	2		2	PROM2	2	95952919	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	10060169	95952919	147246454	22	2661										
ZAP70	0	genome.wustl.edu	37	chr2	98354504	98354504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cttcatcgagcagggcaagcGgatggagtgcccaccagagt	14	11	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	98354504	98354504	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	missense	c.1670	p.R557Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	266	0	0	105	27	20.15	-	-	-	A	98354504	G	A	98354504	3	1	55	1	0	0	0	0	1	0	0	0	17611	1116	39	1	1712	1	ZAP70	2	98354504	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	2401585	98354504	144844869	23	2662										
GLI2	0	genome.wustl.edu	37	chr2	121708875	121708875	+	Frame_Shift_Del	DEL	C	C	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	catctccttgatccggctttCcccgcacccggctggccctg							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	121708875	121708875	C	-	DEL	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	frame_shift_del	c.311	p.P105fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	18	0	0	25	3	10.71	-	-	-	-	121708875	C	-	121708875	7	5	55	1	0	1	0	1	0	0	0	0	6490	855	30	0	321	0	GLI2	2	121708875	Frame_Shift_Del	DEL	C	TCGA-A2-A0EY-01A-11W-A050-09	23354371	121708875	121490498	24	2663										
GPR39	0	genome.wustl.edu	37	chr2	133174867	133174867	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tcggacatcttggtgttcctCatcggcatgcccatggagtt	11	11	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	133174867	133174867	C	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	silent	c.252	p.L84	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	142	0	0	77	16	16.84	-	-	-	T	133174867	C	T	133174867	2	4	55	1	0	0	0	0	0	0	0	1	6743	813	29	2		2	GPR39	2	133174867	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	11465992	133174867	110024506	25	2664										
NEB	0	genome.wustl.edu	37	chr2	152467080	152467080	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	acttttgatggaaatagcatCtgctctcagatcatagtcct	7	9	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	152467080	152467080	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.11968	p.D3990H	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	150	0	0	149	24	13.71	-	-	-	G	152467080	C	G	152467080	3	3	55	1	0	0	0	0	1	0	0	0	10374	913	32	2	14130	2	NEB	2	152467080	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	19292213	152467080	90732293	26	2665										
BBS5	0	genome.wustl.edu	37	chr2	170359665	170359665	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atgatgtagaaatagactctGatggtcacacggatgctttt	10	6	2	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	170359665	170359665	G	A	SNP	BBS5	ENST00000554017	human	ensembl	69_37n	1	known	missense	c.877	p.D293N	1.000	pfam_BBL5	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093	71	0	0	33	15	31.25	-	-	-	A	170359665	G	A	170359665	3	1	55	1	0	0	0	0	1	0	0	0	1344	1290	45	2	915	2	BBS5	2	170359665	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	17892585	170359665	72839708	27	2666										
CHN1	0	genome.wustl.edu	37	chr2	175742723	175742723	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgtcatcttggcaatgtattCtgctgccttggtttcaatat	8	9	4	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	175742723	175742723	C	G	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	missense	c.394	p.E132Q	1.000	pirsf_N-chimaerin	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	150	0	0	83	25	23.15	-	-	-	G	175742723	C	G	175742723	3	3	55	1	0	0	0	0	1	0	0	0	3391	922	32	2	1017	2	CHN1	2	175742723	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	5383058	175742723	67456650	28	2667										
TTN	0	genome.wustl.edu	37	chr2	179422744	179422744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agcagtgatttcatatctccCagcgtcagctgtaacacttt	7	11	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	179422744	179422744	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.79633	p.G26545R	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	66	0	0	21	9	30	-	-	-	T	179422744	C	T	179422744	3	4	55	1	0	0	0	0	1	0	0	0	16832	594	21	4	20782	4	TTN	2	179422744	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	3680021	179422744	63776629	29	2668										
ZDBF2	0	genome.wustl.edu	37	chr2	207175781	207175781	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtcaaagtaaaaagaaaattCatggaaagagggtgacaact	10	4	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	207175781	207175781	C	G	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.6529	p.H2177D	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	46	0	0	33	7	17.5	-	-	-	G	207175781	C	G	207175781	3	3	55	1	0	0	0	0	1	0	0	0	17695	826	29	2	6539	2	ZDBF2	2	207175781	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	27753037	207175781	36023592	30	2669										
TMEM169	0	genome.wustl.edu	37	chr2	216964838	216964838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgccagatgggagctgaccGtgggccccatgtggtcctct	14	13	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	216964838	216964838	G	A	SNP	TMEM169	ENST00000295658	human	ensembl	69_37n	1	known	missense	c.467	p.R156H	0.841	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449	735	0	0	835	165	16.42	-	-	-	A	216964838	G	A	216964838	3	1	55	1	0	0	0	0	1	0	0	0	16179	1145	40	1	473	1	TMEM169	2	216964838	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	9789057	216964838	26234535	31	2670										
OBSL1	0	genome.wustl.edu	37	chr2	220418356	220418356	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cactcgaacgtagctgtgtcGccctcggtcacctctaggtc	10	15	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	220418356	220418356	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.4929	p.G1643	0.974	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	43	0	0	20	4	16.67	-	-	-	A	220418356	G	A	220418356	2	1	55	1	0	0	0	0	0	0	0	1	10886	1074	38	1		1	OBSL1	2	220418356	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	3453518	220418356	22781017	32	2671										
PPP1R7	0	genome.wustl.edu	37	chr2	242089920	242089920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gagcagccaacatggcggcgGaacgcggcgcggggcagcaa	18	12	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	242089920	242089920	G	A	SNP	PPP1R7	ENST00000234038	human	ensembl	69_37n	1	known	missense	c.10	p.E4K	0.987	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	PPP1R7	HGNC	ENSG00000115685	49	0	0	13	5	27.78	-	-	-	A	242089920	G	A	242089920	3	1	55	1	0	0	0	0	1	0	0	0	12453	1175	41	2	12	2	PPP1R7	2	242089920	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	21671564	242089920	1109453	33	2672										
HDLBP	0	genome.wustl.edu	37	chr2	242178170	242178170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	acagatcgatggaatttctgGggtatagcacattctaatgt	10	6	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	2	242178170	242178170	G	A	SNP	HDLBP	ENST00000373292	human	ensembl	69_37n	-1	novel	missense	c.2068	p.P690S	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDLBP	HGNC	ENSG00000115677	103	0	0	68	25	26.88	-	-	-	A	242178170	G	A	242178170	3	1	55	1	0	0	0	0	1	0	0	0	7076	1219	43	4	1199	4	HDLBP	2	242178170	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	88250	242178170	1021203	34	2673										
ITIH4	0	genome.wustl.edu	37	chr3	52858546	52858546	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttgaactggtctctggggctGaggtcatccaggatcttgat	13	8	3	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	52858546	52858546	G	A	SNP	ITIH4	ENST00000441637	human	ensembl	69_37n	-1	novel	nonsense	c.484	p.Q162*	0.373	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITIH4	HGNC	ENSG00000055955	52	0	0	31	8	20.51	-	-	-	A	52858546	G	A	52858546	4	1	55	1	0	0	0	0	0	1	0	0	7960	1277	45	2	1948	2	ITIH4	3	52858546	Nonsense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		52858546	145163884	35	2674										
MYLK	0	genome.wustl.edu	37	chr3	123456342	123456342	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttccagaacctgcatgccgtTcttctcagacacagacacac	6	15	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	123456342	123456342	T	G	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.637	p.N213H	0.979	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	129	0	0	192	25	11.47	-	-	-	G	123456342	T	G	123456342	3	3	55	1	0	0	0	0	1	0	0	0	10128	1783	62	5	5215	5	MYLK	3	123456342	Missense_Mutation	SNP	T	TCGA-A2-A0EY-01A-11W-A050-09	70597796	123456342	74566088	36	2675										
CCDC14	0	genome.wustl.edu	37	chr3	123675589	123675589	+	Frame_Shift_Del	DEL	T	T	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	acgtcttcaagtacttacgcTttctttccatttgttaattt							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	123675589	123675589	T	-	DEL	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	frame_shift_del	c.228	p.A77fs	1.000	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	98	0	0	106	35	24.82	-	-	-	-	123675589	T	-	123675589	7	5	55	1	0	1	0	1	0	0	0	0	2798	1606	56	0	2554	0	CCDC14	3	123675589	Frame_Shift_Del	DEL	T	TCGA-A2-A0EY-01A-11W-A050-09	219247	123675589	74346841	37	2676										
ROPN1	0	genome.wustl.edu	37	chr3	123694230	123694230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agtcaagctaacttacaactCccagagcgctgcaagcaagg	9	12	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	123694230	123694230	C	T	SNP	ROPN1	ENST00000184183	human	ensembl	69_37n	-1	known	missense	c.392	p.G131E	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1	HGNC	ENSG00000065371	42	0	0	23	24	50	-	-	-	T	123694230	C	T	123694230	3	4	55	1	0	0	0	0	1	0	0	0	13609	855	30	2	258	2	ROPN1	3	123694230	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	18641	123694230	74328200	38	2677										
ZIC1	0	genome.wustl.edu	37	chr3	147128456	147128456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ccaggtgaccagcccgcgttCggagcactatgctgcgccgc	13	16	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	147128456	147128456	C	T	SNP	ZIC1	ENST00000282928	human	ensembl	69_37n	1	known	missense	c.557	p.S186L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977	25	0	0	14	15	51.72	-	-	-	T	147128456	C	T	147128456	3	4	55	1	0	0	0	0	1	0	0	0	17774	893	31	1	559	1	ZIC1	3	147128456	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	23434226	147128456	50893974	39	2678										
GYG1	0	genome.wustl.edu	37	chr3	148727120	148727120	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgggcaacaacagatatcaGaaaacacctgccgtttattt	7	10	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	148727120	148727120	G	T	SNP	GYG1	ENST00000345003	human	ensembl	69_37n	1	known	missense	c.539	p.R180I	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754	147	0	0	173	32	15.46	-	-	-	T	148727120	G	T	148727120	3	4	55	1	0	0	0	0	1	0	0	0	6956	942	33	2	557	2	GYG1	3	148727120	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1598664	148727120	49295310	40	2679										
SI	0	genome.wustl.edu	37	chr3	164712085	164712085	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aacagtgccaccattagcatGaatttcatgcatttgtgtgt	8	8	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	164712085	164712085	G	T	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.4801	p.H1601N	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	190	0	0	189	26	12.04	-	-	-	T	164712085	G	T	164712085	3	4	55	1	0	0	0	0	1	0	0	0	14386	1290	45	2	714	2	SI	3	164712085	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	15984965	164712085	33310345	41	2680										
PIK3CA	0	genome.wustl.edu	37	chr3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttatgtaattttattaaagGttttgctatcggcatgccag	8	5	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	178917478	178917478	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.353	p.G118D	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	83	0	0	57	38	40	-	-	-	A	178917478	G	A	178917478	3	1	55	1	0	0	0	0	1	0	0	0	11987	1275	44	4	359	4	PIK3CA	3	178917478	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	14205393	178917478	19104952	42	2681										
ABCF3	0	genome.wustl.edu	37	chr3	183911228	183911228	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaggctctgggccgtgccctCaacaatttcagggtgagtgt	14	10	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	3	183911228	183911228	C	T	SNP	ABCF3	ENST00000429586	human	ensembl	69_37n	1	known	silent	c.1959	p.L653	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204	79	0	0	63	40	38.83	-	-	-	T	183911228	C	T	183911228	2	4	55	1	0	0	0	0	0	0	0	1	67	813	29	2		2	ABCF3	3	183911228	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	4993750	183911228	14111202	43	2682										
HTT	0	genome.wustl.edu	37	chr4	3162104	3162104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atactagagctggccacactGcaggacattgggaaggtttg	13	8	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	4	3162104	3162104	G	T	SNP	HTT	ENST00000509618	human	ensembl	69_37n	1	putative	missense	c.16	p.A6S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HTT	HGNC	ENSG00000197386	433	0	0	365	69	15.86	-	-	-	T	3162104	G	T	3162104	3	4	55	1	0	0	0	0	1	0	0	0	7511	1306	46	4	3963	4	HTT	4	3162104	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		3162104	187992172	44	2683										
N4BP2	0	genome.wustl.edu	37	chr4	40127807	40127807	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atcctgaacaaaaatcatctCagagaacaggcaaaaaatta	5	8	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	4	40127807	40127807	C	G	SNP	N4BP2	ENST00000513269	human	ensembl	69_37n	1	known	nonsense	c.3323	p.S1108*	1.000	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,smart_Smr/MutS2_C,pfscan_Smr/MutS2_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	N4BP2	HGNC	ENSG00000078177	78	0	0	23	17	42.5	-	-	-	G	40127807	C	G	40127807	4	3	55	1	0	0	0	0	0	1	0	0	10182	827	29	2	4422	2	N4BP2	4	40127807	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	36965703	40127807	151026469	45	2684										
FAM13A	0	genome.wustl.edu	37	chr4	89726164	89726164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	caaaaatcaaataaatacctCaaatagaaaggtgacagagg	7	6	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	4	89726164	89726164	C	G	SNP	FAM13A	ENST00000264344	human	ensembl	69_37n	-1	known	missense	c.1047	p.L349F	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	123	0	0	86	78	47.27	-	-	-	G	89726164	C	G	89726164	3	3	55	1	0	0	0	0	1	0	0	0	5492	825	29	2	2092	2	FAM13A	4	89726164	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	49598357	89726164	101428112	46	2685										
ASB5	0	genome.wustl.edu	37	chr4	177146416	177146416	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tatatgtaatatattacctgTgataataatgttctcagagc	6	5	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	4	177146416	177146416	T	A	SNP	ASB5	ENST00000296525	human	ensembl	69_37n	-1	known	silent	c.273	p.S91	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB5	HGNC	ENSG00000164122	78	0	0	42	12	22.22	-	-	-	A	177146416	T	A	177146416	2	1	55	1	0	0	0	0	0	0	0	1	1030	1683	59	5		5	ASB5	4	177146416	Silent	SNP	T	TCGA-A2-A0EY-01A-11W-A050-09	87420252	177146416	14007860	47	2686										
PDCD6	0	genome.wustl.edu	37	chr5	272878	272878	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	acaccgagcttcagcaagctCtctccaacggtgagtgggcc	11	14	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	5	272878	272878	C	G	SNP	PDCD6	ENST00000264933	human	ensembl	69_37n	1	known	missense	c.154	p.L52V	0.007	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	PDCD6	HGNC	ENSG00000249915	40	0	0	21	3	12.5	-	-	-	G	272878	C	G	272878	3	3	55	1	0	0	0	0	1	0	0	0	11696	913	32	2	160	2	PDCD6	5	272878	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		272878	180642382	48	2687										
DDX4	0	genome.wustl.edu	37	chr5	55056082	55056082	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	catgaaaagtggatttgcctCtgggcggaattttggaaaca	12	6	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	5	55056082	55056082	C	T	SNP	DDX4	ENST00000505374	human	ensembl	69_37n	1	known	missense	c.182	p.S61F	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	218	0	0	137	98	41.53	-	-	-	T	55056082	C	T	55056082	3	4	55	1	0	0	0	0	1	0	0	0	4391	913	32	2	192	2	DDX4	5	55056082	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	54783204	55056082	125859178	49	2688										
SNX24	0	genome.wustl.edu	37	chr5	122337115	122337115	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttagatcttttgatgaaacAgagtctgaagagtcaaggta	10	4	3	6			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	5	122337115	122337115	A	G	SNP	SNX24	ENST00000261369	human	ensembl	69_37n	1	known	silent	c.360	p.T120	1.000	pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX24	HGNC	ENSG00000064652	361	0	0	116	47	28.31	-	-	-	G	122337115	A	G	122337115	2	3	55	1	0	0	0	0	0	0	0	1	14984	175	7	5		5	SNX24	5	122337115	Silent	SNP	A	TCGA-A2-A0EY-01A-11W-A050-09	67281033	122337115	58578145	50	2689										
FBXW11	0	genome.wustl.edu	37	chr5	171295750	171295750	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtgtcatcatgggagctgctGatgatctgaaactcatcaaa	10	8	5	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	5	171295750	171295750	G	A	SNP	FBXW11	ENST00000265094	human	ensembl	69_37n	-1	known	silent	c.1518	p.I506	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803	172	0	0	110	27	19.29	-	-	-	A	171295750	G	A	171295750	2	1	55	1	0	0	0	0	0	0	0	1	5810	1280	45	2		2	FBXW11	5	171295750	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	48958635	171295750	9619510	51	2690										
GCM2	0	genome.wustl.edu	37	chr6	10874552	10874552	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgcacactgtcactgtatttCatagcagggggctggtaggc	13	10	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	10874552	10874552	C	A	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	missense	c.1197	p.M399I	0.500	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	138	1	0.72	233	52	17.99	-	-	-	A	10874552	C	A	10874552	3	1	55	1	0	0	0	0	1	0	0	0	6348	826	29	2	327	2	GCM2	6	10874552	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		10874552	160240515	52	2691										
HIST1H2BF	0	genome.wustl.edu	37	chr6	26200015	26200015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tcttcgagcgcatcgctggcGaggcttcccgcctggcgcat	13	15	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	26200015	26200015	G	A	SNP	HIST1H2BF	ENST00000359985	human	ensembl	69_37n	1	known	missense	c.229	p.E77K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BF	HGNC	ENSG00000197846	152	0	0	128	20	13.33	-	-	-	A	26200015	G	A	26200015	3	1	55	1	0	0	0	0	1	0	0	0	7196	1059	37	1	231	1	HIST1H2BF	6	26200015	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	15325463	26200015	144915052	53	2692										
HIST1H1B	0	genome.wustl.edu	37	chr6	27834879	27834879	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttttcgcccctgcagccttCttggccttcttaggcgtggc	10	14	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	27834879	27834879	C	G	SNP	HIST1H1B	ENST00000331442	human	ensembl	69_37n	-1	known	missense	c.429	p.K143N	1.000	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357	48	0	0	20	12	37.5	-	-	-	G	27834879	C	G	27834879	3	3	55	1	0	0	0	0	1	0	0	0	7174	912	32	2	255	2	HIST1H1B	6	27834879	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1634864	27834879	143280188	54	2693										
HIST1H2BO	0	genome.wustl.edu	37	chr6	27861510	27861510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tacaacaagcgctcgaccatCacctccagggagatccagac	8	15	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	27861510	27861510	C	T	SNP	HIST1H2BO	ENST00000303806	human	ensembl	69_37n	1	known	silent	c.270	p.I90	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BO	HGNC	ENSG00000196331	50	0	0	94	19	16.81	-	-	-	T	27861510	C	T	27861510	2	4	55	1	0	0	0	0	0	0	0	1	7205	816	29	2		2	HIST1H2BO	6	27861510	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	26631	27861510	143253557	55	2694										
KIF6	0	genome.wustl.edu	37	chr6	39325124	39325124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agaaatggcttcgtgtgatcGagtgaattcactgctggaga	13	6	1	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	39325124	39325124	G	A	SNP	KIF6	ENST00000458470	human	ensembl	69_37n	-1	known	missense	c.1784	p.S595L	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF6	HGNC	ENSG00000164627	156	0	0	76	25	24.75	-	-	-	A	39325124	G	A	39325124	3	1	55	1	0	0	0	0	1	0	0	0	8360	1045	37	1	355	1	KIF6	6	39325124	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	11463614	39325124	131789943	56	2695										
TRERF1	0	genome.wustl.edu	37	chr6	42200628	42200628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agtgcctgtcgggagctgaaCacctggggaagaaagggagt	17	7	0	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	42200628	42200628	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.3129	p.V1043	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	108	0	0	46	38	44.71	-	-	-	T	42200628	C	T	42200628	2	4	55	1	0	0	0	0	0	0	0	1	16571	465	17	4		4	TRERF1	6	42200628	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	2875504	42200628	128914439	57	2696										
FAM54A	0	genome.wustl.edu	37	chr6	136560810	136560810	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggaggaaaacacggtggctgGagagatgaaaactgaggagg	18	4	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	136560810	136560810	G	C	SNP	FAM54A	ENST00000420702	human	ensembl	69_37n	-1	known	silent	c.663	p.L221	0.000	pfam_Mtfr1	pfam_Mtfr1	-	no_errors	FAM54A	HGNC	ENSG00000146410	159	0	0	115	47	29.01	-	-	-	C	136560810	G	C	136560810	2	2	55	1	0	0	0	0	0	0	0	1	5628	1161	41	2		2	FAM54A	6	136560810	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	94360182	136560810	34554257	58	2697										
KATNA1	0	genome.wustl.edu	37	chr6	149959615	149959615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgataatagaccatcgcagaGtcatagtttcccagcaatgc	8	10	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	149959615	149959615	G	C	SNP	KATNA1	ENST00000335647	human	ensembl	69_37n	-1	known	missense	c.69	p.D23E	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625	118	0	0	122	19	13.48	-	-	-	C	149959615	G	C	149959615	3	2	55	1	0	0	0	0	1	0	0	0	8038	1020	36	4	1446	4	KATNA1	6	149959615	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	13398805	149959615	21155452	59	2698										
AKAP12	0	genome.wustl.edu	37	chr6	151670325	151670325	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aagcagtggaggaatgcaaaGaggaaggagaagagaaacaa	15	3	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	151670325	151670325	G	C	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.799	p.E267Q	0.962	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	46	0	0	51	7	12.07	-	-	-	C	151670325	G	C	151670325	3	2	55	1	0	0	0	0	1	0	0	0	448	943	33	2	838	2	AKAP12	6	151670325	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1710710	151670325	19444742	60	2699										
SYNE1	0	genome.wustl.edu	37	chr6	152623079	152623079	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tctgtcccttccgccagcccCtcgacctcggtcaccgtcag	8	20	3	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	6	152623079	152623079	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.17466	p.E5822	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	27	0	0	24	18	41.86	-	-	-	T	152623079	C	T	152623079	2	4	55	1	0	0	0	0	0	0	0	1	15537	680	24	4		4	SYNE1	6	152623079	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	952754	152623079	18491988	61	2700										
SUN1	0	genome.wustl.edu	37	chr7	882998	882998	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtggaaataaagctgccattCagggaaacggggatgtggga	16	5	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	882998	882998	C	G	SNP	SUN1	ENST00000456758	human	ensembl	69_37n	1	known	missense	c.673	p.Q225E	0.999	pfam_RNA-bd_mt	pfam_RNA-bd_mt,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828	54	0	0	42	15	25.86	-	-	-	G	882998	C	G	882998	3	3	55	1	0	0	0	0	1	0	0	0	15482	827	29	2	584	2	SUN1	7	882998	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		882998	158255665	62	2701										
ACTB	0	genome.wustl.edu	37	chr7	5567953	5567953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtgcctcagggcagcggaacCgctcattgccaatggtgatg	14	11	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	5567953	5567953	C	T	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	missense	c.761	p.R254Q	0.999	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	46	0	0	24	6	20	-	-	-	T	5567953	C	T	5567953	3	4	55	1	0	0	0	0	1	0	0	0	193	652	23	1	378	1	ACTB	7	5567953	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	4684955	5567953	153570710	63	2702										
IL6	0	genome.wustl.edu	37	chr7	22769293	22769293	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaaaaggtgggtgtgtcctCattccctcaacttggtgtgg	13	8	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	22769293	22769293	C	A	SNP	IL6	ENST00000420258	human	ensembl	69_37n	1	known	nonsense	c.647	p.S216*	0.000	smart_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,prints_Interleukin_6,prints_IL6_MGF_GCSF	-	no_errors	IL6	HGNC	ENSG00000136244	117	0	0	79	19	19.39	-	-	-	A	22769293	C	A	22769293	4	1	55	1	0	0	0	0	0	1	0	0	7755	841	29	2		2	IL6	7	22769293	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	17201340	22769293	136369370	64	2703										
ZNF92	0	genome.wustl.edu	37	chr7	64853754	64853754	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agccagacctgatcacctggCtggagcaaggaaaagagccc	12	12	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	64853754	64853754	C	T	SNP	ZNF92	ENST00000328747	human	ensembl	69_37n	1	known	silent	c.166	p.L56	0.995	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757	194	0	0	197	91	31.49	-	-	-	T	64853754	C	T	64853754	2	4	55	1	0	0	0	0	0	0	0	1	18294	796	28	4		4	ZNF92	7	64853754	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	42084461	64853754	94284909	65	2704										
CROT	0	genome.wustl.edu	37	chr7	87020973	87020973	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ccgtacagagactatgcgatCatgcacagttgaagcagtga	11	9	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	87020973	87020973	C	T	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	missense	c.1370	p.S457L	0.987	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	109	0	0	135	41	23.16	-	-	-	T	87020973	C	T	87020973	3	4	55	1	0	0	0	0	1	0	0	0	3924	838	29	2	1504	2	CROT	7	87020973	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	22167219	87020973	72117690	66	2705										
CYP3A7	0	genome.wustl.edu	37	chr7	99317955	99317955	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ccctccggtttgtgaagacaGaataacattctttcactagc	7	11	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	99317955	99317955	G	A	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	missense	c.299	p.S100F	0.470	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	317	0	0	259	137	34.51	-	-	-	A	99317955	G	A	99317955	3	1	55	1	0	0	0	0	1	0	0	0	4212	942	33	2	1252	2	CYP3A7	7	99317955	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	12296982	99317955	59820708	67	2706										
MUC17	0	genome.wustl.edu	37	chr7	100684341	100684341	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aggtaccagcattccaacctCaactcctagtgaaggaatga	8	11	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	100684341	100684341	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	nonsense	c.9644	p.S3215*	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	94	0	0	158	23	12.57	-	-	-	G	100684341	C	G	100684341	4	3	55	1	0	0	0	0	0	1	0	0	10046	838	29	2	9654	2	MUC17	7	100684341	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1366386	100684341	58454322	68	2707										
NRCAM	0	genome.wustl.edu	37	chr7	107823364	107823364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agattcgaaaccattcaaggGctacaaggaaagccaaataa	8	8	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	107823364	107823364	G	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.2305	p.P769T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	37	0	0	40	10	20	-	-	-	T	107823364	G	T	107823364	3	4	55	1	0	0	0	0	1	0	0	0	10717	1217	42	4	1683	4	NRCAM	7	107823364	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	7139023	107823364	51315299	69	2708										
CALD1	0	genome.wustl.edu	37	chr7	134552540	134552540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcaaaagagggaggagatgcGactcgaagcagaaaggtaag	16	5	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	134552540	134552540	G	A	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.56	p.R19Q	0.999	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	207	0	0	176	51	22.47	-	-	-	A	134552540	G	A	134552540	3	1	55	1	0	0	0	0	1	0	0	0	2606	1058	37	1	58	1	CALD1	7	134552540	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	26729176	134552540	24586123	70	2709										
CALD1	0	genome.wustl.edu	37	chr7	134620445	134620445	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttgaaaataaaaagggagaaGagaagggaactaaagtgcaa	12	2	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	134620445	134620445	G	C	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.628	p.E210Q	1.000	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	328	0	0	258	113	29.82	-	-	-	C	134620445	G	C	134620445	3	2	55	1	0	0	0	0	1	0	0	0	2606	943	33	2	1386	2	CALD1	7	134620445	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	67905	134620445	24518218	71	2710										
SLC13A4	0	genome.wustl.edu	37	chr7	135366339	135366339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gatcagtgatgttgctgaccCtcgcccatgctgggtaagtg	13	10	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	135366339	135366339	C	G	SNP	SLC13A4	ENST00000354042	human	ensembl	69_37n	-1	known	missense	c.1853	p.R618T	0.045	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	100	0	0	73	23	23.71	-	-	-	G	135366339	C	G	135366339	3	3	55	1	0	0	0	0	1	0	0	0	14483	681	24	4	31	4	SLC13A4	7	135366339	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	745894	135366339	23772324	72	2711										
ZNF467	0	genome.wustl.edu	37	chr7	149461892	149461892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cggggccgcgtgggcggcttCgccgtgaatgagctggtgcc	19	12	0	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	7	149461892	149461892	C	T	SNP	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	missense	c.1699	p.E567K	0.021	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	16	0	0	9	4	30.77	-	-	-	T	149461892	C	T	149461892	3	4	55	1	0	0	0	0	1	0	0	0	18023	893	31	1	92	1	ZNF467	7	149461892	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	14095553	149461892	9676771	73	2712										
ELP3	0	genome.wustl.edu	37	chr8	27989918	27989918	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaagagacattgaacagttCacagtaagtgtgacttcagc	10	7	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	27989918	27989918	C	T	SNP	ELP3	ENST00000256398	human	ensembl	69_37n	1	known	silent	c.903	p.F301	0.960	smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014	116	0	0	76	15	16.48	-	-	-	T	27989918	C	T	27989918	2	4	55	1	0	0	0	0	0	0	0	1	5118	825	29	2		2	ELP3	8	27989918	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		27989918	118374104	74	2713										
GTF2E2	0	genome.wustl.edu	37	chr8	30472233	30472233	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tctcctcgctgatgccgtgtCtatcaagtgaagaaattgtt	9	9	3	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	30472233	30472233	C	T	SNP	GTF2E2	ENST00000355904	human	ensembl	69_37n	-1	known	splice_site	c.259-1	e3-1	1.000	-	-	-	no_errors	GTF2E2	HGNC	ENSG00000197265	95	0	0	82	32	27.59	-	-	-	T	30472233	C	T	30472233	5	4	55	1	0	0	0	0	0	0	1	0	6908	927	32	2	637	2	GTF2E2	8	30472233	Splice_Site	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	2482315	30472233	115891789	75	2714										
WRN	0	genome.wustl.edu	37	chr8	30954325	30954325	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgtaactccagaatactgttCaggtaacatgggcctgctcc	9	12	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	30954325	30954325	C	T	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	missense	c.1940	p.S647L	0.829	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	72	0	0	73	39	34.51	-	-	-	T	30954325	C	T	30954325	3	4	55	1	0	0	0	0	1	0	0	0	17499	838	29	2	2002	2	WRN	8	30954325	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	482092	30954325	115409697	76	2715										
ASH2L	0	genome.wustl.edu	37	chr8	37996551	37996551	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tcttgtatcacgtggagacaGaagtggatgggaggcgcagt	16	6	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	37996551	37996551	G	A	SNP	ASH2L	ENST00000343823	human	ensembl	69_37n	1	known	missense	c.1849	p.E617K	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691	234	0	0	152	30	16.39	-	-	-	A	37996551	G	A	37996551	3	1	55	1	0	0	0	0	1	0	0	0	1046	943	33	2	1911	2	ASH2L	8	37996551	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	7042226	37996551	108367471	77	2716										
PRKDC	0	genome.wustl.edu	37	chr8	48839893	48839893	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tctgccaagggggtatagctCaggcccagtttgaaagccat	12	10	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	48839893	48839893	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	silent	c.2280	p.L760	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	86	0	0	82	39	31.45	-	-	-	T	48839893	C	T	48839893	2	4	55	1	0	0	0	0	0	0	0	1	12602	813	29	2		2	PRKDC	8	48839893	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	10843342	48839893	97524129	78	2717										
PAG1	0	genome.wustl.edu	37	chr8	81888988	81888988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtttggagttttttcgaagtCtttaacagtagcatagagat	10	4	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	81888988	81888988	C	T	SNP	PAG1	ENST00000220597	human	ensembl	69_37n	-1	known	missense	c.1090	p.D364N	0.998	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641	98	0	0	136	24	14.91	-	-	-	T	81888988	C	T	81888988	3	4	55	1	0	0	0	0	1	0	0	0	11461	913	32	2	212	2	PAG1	8	81888988	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	33049095	81888988	64475034	79	2718										
DPY19L4	0	genome.wustl.edu	37	chr8	95782692	95782692	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttttgtagtggtaagtccctGaaggaaactgttactcttga	10	6	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	95782692	95782692	G	A	SNP	DPY19L4	ENST00000523020	human	ensembl	69_37n	1	novel	missense	c.745	p.E249K	0.981	pfam_Dpy-19	pfam_Dpy-19	-	no_start_codon:pseudogene:no_stop_codon	DPY19L4	HGNC	ENSG00000156162	90	0	0	82	44	34.65	-	-	-	A	95782692	G	A	95782692	3	1	55	1	0	0	0	0	1	0	0	0	4778	1277	45	2	1397	2	DPY19L4	8	95782692	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	13893704	95782692	50581330	80	2719										
KCNS2	0	genome.wustl.edu	37	chr8	99440888	99440888	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cctggcgaggaccctaggttCgaaatcgtggagcactttgg	14	10	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	99440888	99440888	C	T	SNP	KCNS2	ENST00000287042	human	ensembl	69_37n	1	known	silent	c.681	p.F227	1.000	NULL	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486	122	0	0	63	16	20	-	-	-	T	99440888	C	T	99440888	2	4	55	1	0	0	0	0	0	0	0	1	8143	883	31	1		1	KCNS2	8	99440888	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	3658196	99440888	46923134	81	2720										
TRPS1	0	genome.wustl.edu	37	chr8	116427084	116427084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agtcaatgaaccctgggcttCgtatttacttaggctgggga	12	8	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	8	116427084	116427084	C	T	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	missense	c.3052	p.E1018K	0.998	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	83	0	0	106	49	31.41	-	-	-	T	116427084	C	T	116427084	3	4	55	1	0	0	0	0	1	0	0	0	16689	893	31	1	836	1	TRPS1	8	116427084	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	16986196	116427084	29936938	82	2721										
KIAA1432	0	genome.wustl.edu	37	chr9	5765456	5765456	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtaggcaacatgctacccttCtattcaacacagcactagaa	6	12	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	5765456	5765456	C	G	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.2647	p.L883V	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	216	0	0	161	65	28.63	-	-	-	G	5765456	C	G	5765456	3	3	55	1	0	0	0	0	1	0	0	0	8285	912	32	2	2721	2	KIAA1432	9	5765456	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		5765456	135447975	83	2722										
LINGO2	0	genome.wustl.edu	37	chr9	27950415	27950415	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atgttgtcactcaagtctatCtcttccagcagaggatatga	8	9	4	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	27950415	27950415	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	silent	c.255	p.E85	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	98	0	0	179	71	28.17	-	-	-	T	27950415	C	T	27950415	2	4	55	1	0	0	0	0	0	0	0	1	8871	912	32	2		2	LINGO2	9	27950415	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	22184959	27950415	113263016	84	2723										
C9orf131	0	genome.wustl.edu	37	chr9	35043674	35043674	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cctgccaatccccagcttctCtgtcagaacccagaaaagtt	6	15	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	35043674	35043674	C	A	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.1048	p.L350M	0.349	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	190	0	0	172	37	17.62	-	-	-	A	35043674	C	A	35043674	3	1	55	1	0	0	0	0	1	0	0	0	2482	912	32	2	1070	2	C9orf131	9	35043674	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	7093259	35043674	106169757	85	2724										
CD72	0	genome.wustl.edu	37	chr9	35618081	35618081	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	actgcgggcacttgaacattCtcgtaggtgatttccccatc	9	12	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	35618081	35618081	C	T	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	silent	c.120	p.E40	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	109	0	0	82	38	31.15	-	-	-	T	35618081	C	T	35618081	2	4	55	1	0	0	0	0	0	0	0	1	3063	912	32	2		2	CD72	9	35618081	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	574407	35618081	105595350	86	2725										
CD72	0	genome.wustl.edu	37	chr9	35618271	35618271	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aggggagccttcacaaacctCagatctgcataggtgatggc	12	10	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	35618271	35618271	C	T	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	silent	c.30	p.L10	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	83	0	0	60	19	24.05	-	-	-	T	35618271	C	T	35618271	2	4	55	1	0	0	0	0	0	0	0	1	3063	813	29	2		2	CD72	9	35618271	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	190	35618271	105595160	87	2726										
IARS	0	genome.wustl.edu	37	chr9	95043061	95043061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atattgcatttctggattaaCacacacagcaaggttactag	7	8	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	95043061	95043061	C	T	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.712	p.V238I	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	116	0	0	130	53	28.96	-	-	-	T	95043061	C	T	95043061	3	4	55	1	0	0	0	0	1	0	0	0	7527	478	17	4	3188	4	IARS	9	95043061	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	59424790	95043061	46170370	88	2727										
SMC2	0	genome.wustl.edu	37	chr9	106862469	106862469	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaaaaaaggaggctaagctGaaagaaattaagacggtaat	11	3	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	106862469	106862469	G	A	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	silent	c.576	p.L192	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	56	0	0	18	22	55	-	-	-	A	106862469	G	A	106862469	2	1	55	1	0	0	0	0	0	0	0	1	14872	1277	45	2		2	SMC2	9	106862469	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	11819408	106862469	34350962	89	2728										
FBXW2	0	genome.wustl.edu	37	chr9	123533674	123533674	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	actggtagagaccaagtgctGaactacagacaatgtatttg	10	7	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	123533674	123533674	G	A	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	missense	c.1028	p.S343L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	152	0	0	51	29	35.8	-	-	-	A	123533674	G	A	123533674	3	1	55	1	0	0	0	0	1	0	0	0	5812	1294	45	2	344	2	FBXW2	9	123533674	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	16671205	123533674	17679757	90	2729										
C5	0	genome.wustl.edu	37	chr9	123737059	123737059	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agaaagttcttcatttacctCtactggcctcccaaggaaat	6	11	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	123737059	123737059	C	G	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.4015	p.E1339Q	0.997	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	170	0	0	51	53	50.96	-	-	-	G	123737059	C	G	123737059	3	3	55	1	0	0	0	0	1	0	0	0	2301	922	32	2	1063	2	C5	9	123737059	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	203385	123737059	17476372	91	2730										
DENND1A	0	genome.wustl.edu	37	chr9	126520100	126520100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gccaacttggctaactgtgaGgctgcagcaaaggcagaaca	12	10	0	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	126520100	126520100	G	A	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	missense	c.88	p.L30F	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	51	0	0	29	20	40	-	-	-	A	126520100	G	A	126520100	3	1	55	1	0	0	0	0	1	0	0	0	4462	1014	35	4	3024	4	DENND1A	9	126520100	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	2783041	126520100	14693331	92	2731										
GOLGA1	0	genome.wustl.edu	37	chr9	127674285	127674285	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgtgtgataacgtcttctttCtcttgagtttcagcagtgac	9	8	4	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	127674285	127674285	C	T	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	silent	c.864	p.E288	0.976	superfamily_Prefoldin	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	264	0	0	128	72	36	-	-	-	T	127674285	C	T	127674285	2	4	55	1	0	0	0	0	0	0	0	1	6603	912	32	2		2	GOLGA1	9	127674285	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1154185	127674285	13539146	93	2732										
C9orf117	0	genome.wustl.edu	37	chr9	130474484	130474484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cagttggggtccaggagccaGagagaccagctgagcctgca	15	11	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	130474484	130474484	G	C	SNP	C9orf117	ENST00000373295	human	ensembl	69_37n	1	known	missense	c.993	p.Q331H	0.005	NULL	NULL	-	no_errors	C9orf117	HGNC	ENSG00000160401	48	0	0	11	9	45	-	-	-	C	130474484	G	C	130474484	3	2	55	1	0	0	0	0	1	0	0	0	2476	933	33	2	1015	2	C9orf117	9	130474484	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	2800199	130474484	10738947	94	2733										
LAMC3	0	genome.wustl.edu	37	chr9	133907491	133907491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cggctcaacacgtttggggaCgacatcttcaaggaccccaa	10	13	3	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	133907491	133907491	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	1	known	silent	c.738	p.D246	0.943	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	122	0	0	44	21	31.82	-	-	-	T	133907491	C	T	133907491	2	4	55	1	0	0	0	0	0	0	0	1	8670	535	19	1		1	LAMC3	9	133907491	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	3433007	133907491	7305940	95	2734										
SETX	0	genome.wustl.edu	37	chr9	135173682	135173682	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctggatggaaaggtaacactCagttttcccattacgcacta	8	10	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	135173682	135173682	C	T	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.5566	p.E1856K	0.885	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	52	0	0	46	17	26.98	-	-	-	T	135173682	C	T	135173682	3	4	55	1	0	0	0	0	1	0	0	0	14229	835	29	2	2523	2	SETX	9	135173682	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1266191	135173682	6039749	96	2735										
SETX	0	genome.wustl.edu	37	chr9	135203024	135203024	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttagtcttttttcgggtatCaactactccaacagttttgc	6	9	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	9	135203024	135203024	C	T	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.3961	p.D1321N	0.014	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	150	0	0	115	37	24.18	-	-	-	T	135203024	C	T	135203024	3	4	55	1	0	0	0	0	1	0	0	0	14229	826	29	2	4140	2	SETX	9	135203024	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	29342	135203024	6010407	97	2736										
FRMD4A	0	genome.wustl.edu	37	chr10	13743360	13743360	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cttactctgctttctgtccaGatagaactggtgttggctta	9	9	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	10	13743360	13743360	G	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	silent	c.955	p.L319	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	138	0	0	74	14	15.91	-	-	-	A	13743360	G	A	13743360	2	1	55	1	0	0	0	0	0	0	0	1	6100	933	33	2		2	FRMD4A	10	13743360	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		13743360	121791387	98	2737										
DCLRE1C	0	genome.wustl.edu	37	chr10	14950493	14950493	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atataaatattgtaaatgctCtcgtttaggtaactcagctt	6	6	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	10	14950493	14950493	C	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.1993	p.E665Q	0.542	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	175	0	0	67	80	54.05	-	-	-	G	14950493	C	G	14950493	3	3	55	1	0	0	0	0	1	0	0	0	4327	922	32	2	89	2	DCLRE1C	10	14950493	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1207133	14950493	120584254	99	2738										
GRID1	0	genome.wustl.edu	37	chr10	87615921	87615922	+	Frame_Shift_Ins	INS	-	-	TG													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgttggccagcatcagaacaINSctgtcatacagatagaggtt							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	10	87615921	87615922	-	TG	INS	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	frame_shift_ins	c.978_977	p.V327fs	0.999:1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	62	0	0	70	23	24.73	-	-	-	TG	87615922	-	TG	87615921	7	5	55	1	0	1	1	0	0	0	0	0	6822	156	6	0	2091	0	GRID1	10	87615921	Frame_Shift_Ins	INS	-	TCGA-A2-A0EY-01A-11W-A050-09	72665428	87615921	47918826	100	2739										
PDCD11	0	genome.wustl.edu	37	chr10	105160163	105160163	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cccgcttctagatttctactGaagagggatccaccaaaaga	8	11	2	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	10	105160163	105160163	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.112	p.E38K	1.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	171	0	0	84	76	47.5	-	-	-	A	105160163	G	A	105160163	3	1	55	1	0	0	0	0	1	0	0	0	11690	1291	45	2	118	2	PDCD11	10	105160163	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	17544242	105160163	30374584	101	2740										
QSER1	0	genome.wustl.edu	37	chr11	32955397	32955397	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgcctgtgatttacaaattCttcagcagtcaatactgcag	7	10	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	32955397	32955397	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2206	p.L736V	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	38	0	0	39	17	30.36	-	-	-	G	32955397	C	G	32955397	3	3	55	1	0	0	0	0	1	0	0	0	12965	913	32	2	2212	2	QSER1	11	32955397	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		32955397	102051119	102	2741										
QSER1	0	genome.wustl.edu	37	chr11	32955563	32955563	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcaactccatcctcaaaattCtgaagttatgaaaatggacc	6	10	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	32955563	32955563	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2372	p.S791C	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	38	0	0	36	7	15.56	-	-	-	G	32955563	C	G	32955563	3	3	55	1	0	0	0	0	1	0	0	0	12965	913	32	2	2378	2	QSER1	11	32955563	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	166	32955563	102050953	103	2742										
OR4D11	0	genome.wustl.edu	37	chr11	59271218	59271218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgtgagtctcgccttcacaCccccatgtacttcctgctcc	6	18	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	59271218	59271218	C	A	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	missense	c.170	p.T57N	0.971	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	139	0	0	215	39	15.23	-	-	-	A	59271218	C	A	59271218	3	1	55	1	0	0	0	0	1	0	0	0	11128	507	18	4	172	4	OR4D11	11	59271218	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	26315655	59271218	75735298	104	2743										
FERMT3	0	genome.wustl.edu	37	chr11	63986822	63986822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aggagatgatggtgtttgccGccctgcaggtaccaggcggg	17	9	0	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	63986822	63986822	G	A	SNP	FERMT3	ENST00000279227	human	ensembl	69_37n	1	known	missense	c.886	p.A296T	0.998	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781	30	0	0	8	5	38.46	-	-	-	A	63986822	G	A	63986822	3	1	55	1	0	0	0	0	1	0	0	0	5865	1087	38	1	908	1	FERMT3	11	63986822	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4715604	63986822	71019694	105	2744										
SIPA1	0	genome.wustl.edu	37	chr11	65409803	65409804	+	Frame_Shift_Ins	INS	-	-	G													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aggagaaggagggcagcggaINSgggggcaccctgcacagcta							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	65409803	65409804	-	G	INS	SIPA1	ENST00000394224	human	ensembl	69_37n	1	known	frame_shift_ins	c.762_763	p.T256fs	0.968:0.985	NULL	pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1	HGNC	ENSG00000213445	13	0	0	4	2	33.33	-	-	-	G	65409804	-	G	65409803	7	5	55	1	0	1	1	0	0	0	0	0	14417	291	11	0	768	0	SIPA1	11	65409803	Frame_Shift_Ins	INS	-	TCGA-A2-A0EY-01A-11W-A050-09	1422981	65409803	69596713	106	2745										
ACTN3	0	genome.wustl.edu	37	chr11	66325184	66325184	+	Frame_Shift_Del	DEL	C	C	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgtcagctgctggagtggatCcgccgcactgtcccatggct							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	66325184	66325184	C	-	DEL	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	frame_shift_del	c.1041	p.R348fs	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	49	0	0	22	23	50	-	-	-	-	66325184	C	-	66325184	7	5	55	1	0	1	0	1	0	0	0	0	206	845	30	0	950	0	ACTN3	11	66325184	Frame_Shift_Del	DEL	C	TCGA-A2-A0EY-01A-11W-A050-09	915381	66325184	68681332	107	2746										
PCF11	0	genome.wustl.edu	37	chr11	82876651	82876651	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttgtgttttaggcagtttctCttagtgttcagcaggaaaca	10	6	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	82876651	82876651	C	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	missense	c.712	p.L238F	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	42	0	0	52	6	10.34	-	-	-	T	82876651	C	T	82876651	3	4	55	1	0	0	0	0	1	0	0	0	11646	913	32	2	730	2	PCF11	11	82876651	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	16551467	82876651	52129865	108	2747										
MLL	0	genome.wustl.edu	37	chr11	118375222	118375222	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttgggtgagagcccagagtCatcttcatcagaactcctga	10	10	4	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	118375222	118375222	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.8606	p.S2869L	0.999	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	61	0	0	35	20	35.71	-	-	-	T	118375222	C	T	118375222	3	4	55	1	0	0	0	0	1	0	0	0	9691	838	29	2	8712	2	MLL	11	118375222	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	35498571	118375222	16631294	109	2748										
TRAPPC4	0	genome.wustl.edu	37	chr11	118890872	118890872	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcatataggctctttgccatCggctcccagctgtctcctga	9	14	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	11	118890872	118890872	C	T	SNP	TRAPPC4	ENST00000533632	human	ensembl	69_37n	1	known	silent	c.363	p.I121	0.998	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,pfam_Sedlin,superfamily_Longin-like_dom	-	no_errors	TRAPPC4	HGNC	ENSG00000196655	47	0	0	25	6	19.35	-	-	-	T	118890872	C	T	118890872	2	4	55	1	0	0	0	0	0	0	0	1	16557	874	31	1		1	TRAPPC4	11	118890872	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	515650	118890872	16115644	110	2749										
A2M	0	genome.wustl.edu	37	chr12	9246090	9246090	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	accaaatcccagatccatgtCtcagggaagtactttcgtac	7	12	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	9246090	9246090	C	T	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	silent	c.2211	p.E737	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	97	0	0	56	27	32.14	-	-	-	T	9246090	C	T	9246090	2	4	55	1	0	0	0	0	0	0	0	1	4	912	32	2		2	A2M	12	9246090	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		9246090	124605805	111	2750										
GRIN2B	0	genome.wustl.edu	37	chr12	14018978	14018978	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agatggtggaaatcatctttCtcgtgggcatccttgatggc	12	8	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	14018978	14018978	C	T	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.165	p.E55	1.000	NULL	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	111	0	0	97	61	37.89	-	-	-	T	14018978	C	T	14018978	2	4	55	1	0	0	0	0	0	0	0	1	6831	912	32	2		2	GRIN2B	12	14018978	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	4772888	14018978	119832917	112	2751										
SLC38A1	0	genome.wustl.edu	37	chr12	46600987	46600987	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctttatggcagagggtagttCattttttacgatgaagaggt	12	4	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	46600987	46600987	C	A	SNP	SLC38A1	ENST00000398637	human	ensembl	69_37n	-1	known	nonsense	c.514	p.E172*	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371	91	0	0	74	29	27.62	-	-	-	A	46600987	C	A	46600987	4	1	55	1	0	0	0	0	0	1	0	0	14690	835	29	2	989	2	SLC38A1	12	46600987	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	32582009	46600987	87250908	113	2752										
DIP2B	0	genome.wustl.edu	37	chr12	51127933	51127933	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttagggaacctcagggcctGatccgactactgtgtatgtg	12	9	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	51127933	51127933	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.3997	p.D1333N	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	149	0	0	72	15	17.24	-	-	-	A	51127933	G	A	51127933	3	1	55	1	0	0	0	0	1	0	0	0	4564	1290	45	2	4127	2	DIP2B	12	51127933	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4526946	51127933	82723962	114	2753										
KRT76	0	genome.wustl.edu	37	chr12	53164971	53164971	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gccatctctccacgctgctcAgcctctgcaattgccgtctg	8	17	4	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	53164971	53164971	A	G	SNP	KRT76	ENST00000332411	human	ensembl	69_37n	-1	known	silent	c.1296	p.A432	0.972	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	120	0	0	50	17	25.37	-	-	-	G	53164971	A	G	53164971	2	3	55	1	0	0	0	0	0	0	0	1	8542	175	7	5		5	KRT76	12	53164971	Silent	SNP	A	TCGA-A2-A0EY-01A-11W-A050-09	2037038	53164971	80686924	115	2754										
ACSS3	0	genome.wustl.edu	37	chr12	81610679	81610679	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aaataacatttctttttccaGagactggatctccaattact	4	9	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	81610679	81610679	G	C	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	splice_site	c.1355-1	e10-1	1.000	-	-	-	no_errors	ACSS3	HGNC	ENSG00000111058	40	0	0	56	13	18.84	-	-	-	C	81610679	G	C	81610679	5	2	55	1	0	0	0	0	0	0	1	0	190	956	33	2	1392	2	ACSS3	12	81610679	Splice_Site	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	28445708	81610679	52241216	116	2755										
ACSS3	0	genome.wustl.edu	37	chr12	81647325	81647325	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agaaattgtgaaacacgttaGacagaacattggccctgtgg	11	7	0	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	81647325	81647325	G	A	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.1871	p.R624K	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	79	0	0	75	13	14.61	-	-	-	A	81647325	G	A	81647325	3	1	55	1	0	0	0	0	1	0	0	0	190	942	33	2	1929	2	ACSS3	12	81647325	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	36646	81647325	52204570	117	2756										
ACTR6	0	genome.wustl.edu	37	chr12	100604127	100604127	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctaaaggagatcatatcttaCaggtgatgcttagctttgat	9	6	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	100604127	100604127	C	G	SNP	ACTR6	ENST00000188312	human	ensembl	69_37n	1	known	nonsense	c.570	p.Y190*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR6	HGNC	ENSG00000075089	86	0	0	101	16	13.68	-	-	-	G	100604127	C	G	100604127	4	3	55	1	0	0	0	0	0	1	0	0	216	489	17	4	592	4	ACTR6	12	100604127	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	18956802	100604127	33247768	118	2757										
WDR66	0	genome.wustl.edu	37	chr12	122413473	122413473	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agaagactacttctactattCtcagctccgcagtcaaggca	7	12	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	122413473	122413473	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.2888	p.S963F	0.297	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	86	0	0	38	10	20.83	-	-	-	T	122413473	C	T	122413473	3	4	55	1	0	0	0	0	1	0	0	0	17414	913	32	2	3017	2	WDR66	12	122413473	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	21809346	122413473	11438422	119	2758										
KNTC1	0	genome.wustl.edu	37	chr12	123089434	123089434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgtttaaaaggacgaaaaacGtgaaaaagccgaggctttgt	11	5	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	12	123089434	123089434	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.5186	p.R1729H	0.966	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	52	0	0	22	11	32.35	-	-	-	A	123089434	G	A	123089434	3	1	55	1	0	0	0	0	1	0	0	0	8481	1145	40	1	5380	1	KNTC1	12	123089434	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	675961	123089434	10762461	120	2759										
PARP4	0	genome.wustl.edu	37	chr13	25021216	25021216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	attgagaaacaaggacggcaCctgggctggggcctgcaggg	17	9	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	25021216	25021216	C	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3223	p.V1075M	0.974	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	37	0	0	43	12	21.82	-	-	-	T	25021216	C	T	25021216	3	4	55	1	0	0	0	0	1	0	0	0	11536	507	18	4	1987	4	PARP4	13	25021216	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		25021216	90148662	121	2760										
PABPC3	0	genome.wustl.edu	37	chr13	25670378	25670378	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tacccaacggcctcgctctaCgtgggggacctccaccccga	10	18	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	25670378	25670378	C	G	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	nonsense	c.42	p.Y14*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	47	0	0	90	17	15.74	-	-	-	G	25670378	C	G	25670378	4	3	55	1	0	0	0	0	0	1	0	0	11438	547	19	3	44	3	PABPC3	13	25670378	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	649162	25670378	89499500	122	2761										
STARD13	0	genome.wustl.edu	37	chr13	33859651	33859651	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gatggcgtgctagaatccggCtcatcctgtaaggagagcgt	14	9	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	33859651	33859651	C	G	SNP	STARD13	ENST00000336934	human	ensembl	69_37n	-1	known	missense	c.125	p.S42T	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121	110	0	0	167	23	11.98	-	-	-	G	33859651	C	G	33859651	3	3	55	1	0	0	0	0	1	0	0	0	15347	797	28	4	3421	4	STARD13	13	33859651	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	8189273	33859651	81310227	123	2762										
RCBTB2	0	genome.wustl.edu	37	chr13	49089446	49089446	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttcaatggtgctctggacgtCacctaaccccaaacagccac	7	15	3	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	49089446	49089446	C	T	SNP	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	missense	c.259	p.D87N	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	70	0	0	76	24	23.53	-	-	-	T	49089446	C	T	49089446	3	4	55	1	0	0	0	0	1	0	0	0	13255	826	29	2	1451	2	RCBTB2	13	49089446	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	15229795	49089446	66080432	124	2763										
TDRD3	0	genome.wustl.edu	37	chr13	61057959	61057959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggaactgaaggtggaccaccGccttttgtgccttttggaca	12	10	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	61057959	61057959	G	A	SNP	TDRD3	ENST00000535286	human	ensembl	69_37n	1	known	silent	c.546	p.P182	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	379	0	0	489	56	10.22	-	-	-	A	61057959	G	A	61057959	2	1	55	1	0	0	0	0	0	0	0	1	15827	1074	38	1		1	TDRD3	13	61057959	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	11968513	61057959	54111919	125	2764										
DNAJC3	0	genome.wustl.edu	37	chr13	96438207	96438207	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgacagctattcaggattatGaaactgctcaggaacacaat	8	8	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	96438207	96438207	G	A	SNP	DNAJC3	ENST00000376795	human	ensembl	69_37n	1	known	missense	c.1090	p.E364K	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC3	HGNC	ENSG00000102580	49	0	0	82	19	18.1	-	-	-	A	96438207	G	A	96438207	3	1	55	1	0	0	0	0	1	0	0	0	4682	1291	45	2	1128	2	DNAJC3	13	96438207	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	35380248	96438207	18731671	126	2765										
IPO5	0	genome.wustl.edu	37	chr13	98670799	98670799	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcatctttgatgatgtcataGaacactgtagtccagcctca	8	10	3	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	98670799	98670799	G	A	SNP	IPO5	ENST00000261574	human	ensembl	69_37n	1	known	missense	c.2731	p.E911K	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150	87	0	0	133	19	12.5	-	-	-	A	98670799	G	A	98670799	3	1	55	1	0	0	0	0	1	0	0	0	7850	943	33	2	2825	2	IPO5	13	98670799	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	2232592	98670799	16499079	127	2766										
DOCK9	0	genome.wustl.edu	37	chr13	99481583	99481583	+	Frame_Shift_Del	DEL	A	A	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgagagatcgccatttttgAcatggatcctggccatgctg							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	13	99481583	99481583	A	-	DEL	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	frame_shift_del	c.4877	p.V1626fs	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	36	0	0	49	42	44.68	-	-	-	-	99481583	A	-	99481583	7	5	55	1	0	1	0	1	0	0	0	0	4729	275	10	0	1384	0	DOCK9	13	99481583	Frame_Shift_Del	DEL	A	TCGA-A2-A0EY-01A-11W-A050-09	810784	99481583	15688295	128	2767										
CLEC14A	0	genome.wustl.edu	37	chr14	38724848	38724848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gctcctccacccactgcagcGtgtcgctttcgagaccgccg	10	18	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	14	38724848	38724848	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	69_37n	-1	known	missense	c.380	p.T127M	0.607	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435	27	0	0	9	6	37.5	-	-	-	A	38724848	G	A	38724848	3	1	55	1	0	0	0	0	1	0	0	0	3529	1145	40	1	1096	1	CLEC14A	14	38724848	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		38724848	68624692	129	2768										
RBM25	0	genome.wustl.edu	37	chr14	73576159	73576159	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aggaaatcaggcagcgccttCtggcagaagggcatccagat	13	10	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	14	73576159	73576159	C	G	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	missense	c.1651	p.L551V	0.927	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	118	0	0	78	37	32.17	-	-	-	G	73576159	C	G	73576159	3	3	55	1	0	0	0	0	1	0	0	0	13208	912	32	2	1701	2	RBM25	14	73576159	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	34851311	73576159	33773381	130	2769										
CDC42BPB	0	genome.wustl.edu	37	chr14	103465921	103465921	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cctgtgcacgtaatgaagctGatggatggagtcaatggcca	13	8	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	14	103465921	103465921	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	nonsense	c.577	p.Q193*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	182	0	0	87	19	17.59	-	-	-	A	103465921	G	A	103465921	4	1	55	1	0	0	0	0	0	1	0	0	3102	1299	45	2	4690	2	CDC42BPB	14	103465921	Nonsense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	29889762	103465921	3883619	131	2770										
RYR3	0	genome.wustl.edu	37	chr15	34094087	34094087	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tagaacttcaagagagaagaGcaaaattttgtgattcagaa	9	4	2	6			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	15	34094087	34094087	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.9936	p.E3312	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	97	0	0	81	20	19.8	-	-	-	A	34094087	G	A	34094087	2	1	55	1	0	0	0	0	0	0	0	1	13856	962	34	4		4	RYR3	15	34094087	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		34094087	68437305	132	2771										
CAPN3	0	genome.wustl.edu	37	chr15	42703522	42703522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gacaaggatggagatggtatCatcaagctcaacgttctgga	12	7	4	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	15	42703522	42703522	C	T	SNP	CAPN3	ENST00000568153	human	ensembl	69_37n	1	known	missense	c.155	p.S52L	1.000	pfscan_EF_HAND_2	pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CAPN3	HGNC	ENSG00000092529	176	0	0	85	30	25.86	-	-	-	T	42703522	C	T	42703522	3	4	55	1	0	0	0	0	1	0	0	0	2653	816	29	2	2560	2	CAPN3	15	42703522	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	8609435	42703522	59827870	133	2772										
MYO9A	0	genome.wustl.edu	37	chr15	72141301	72141301	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tttgttccacaacaatcagtTccacacaactgaaacagaag	5	11	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	15	72141301	72141301	T	A	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.6935	p.E2312V	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	112	0	0	78	24	23.53	-	-	-	A	72141301	T	A	72141301	3	1	55	1	0	0	0	0	1	0	0	0	10156	1783	62	5	940	5	MYO9A	15	72141301	Missense_Mutation	SNP	T	TCGA-A2-A0EY-01A-11W-A050-09	29437779	72141301	30390091	134	2773										
LMAN1L	0	genome.wustl.edu	37	chr15	75111590	75111590	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tggaggtttctttggggtctCagcagccaccggcaccctgg	14	12	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	15	75111590	75111590	C	G	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	nonsense	c.695	p.S232*	0.985	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	105	0	0	19	18	48.65	-	-	-	G	75111590	C	G	75111590	4	3	55	1	0	0	0	0	0	1	0	0	8893	838	29	2	717	2	LMAN1L	15	75111590	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	2970289	75111590	27419802	135	2774										
POLR3K	0	genome.wustl.edu	37	chr16	103518	103518	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	taggggcacgtgttgcaggaGaagcggtggcagcgttgtcc	18	8	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	103518	103518	G	A	SNP	POLR3K	ENST00000293860	human	ensembl	69_37n	-1	known	silent	c.69	p.F23	1.000	pfam_DNA-dir_RNA_pol_M/15kDasu,smart_DNA-dir_RNA_pol_M/15kDasu	pfam_Znf_TFIIS,pfam_DNA-dir_RNA_pol_M/15kDasu,smart_DNA-dir_RNA_pol_M/15kDasu,smart_Znf_TFIIS,pfscan_Znf_TFIIS	-	no_errors	POLR3K	HGNC	ENSG00000161980	36	0	0	33	8	19.51	-	-	-	A	103518	G	A	103518	2	1	55	1	0	0	0	0	0	0	0	1	12311	933	33	2		2	POLR3K	16	103518	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		103518	90251235	136	2775										
ERCC4	0	genome.wustl.edu	37	chr16	14041640	14041640	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgcgtggagcgcaagagtatCagtgatttaatcggctcttt	12	7	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	14041640	14041640	C	T	SNP	ERCC4	ENST00000311895	human	ensembl	69_37n	1	known	silent	c.2187	p.I729	1.000	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,smart_ERCC4_domain,tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595	87	0	0	80	17	17.17	-	-	-	T	14041640	C	T	14041640	2	4	55	1	0	0	0	0	0	0	0	1	5252	816	29	2		2	ERCC4	16	14041640	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	13938122	14041640	76313113	137	2776										
NOD2	0	genome.wustl.edu	37	chr16	50744980	50744980	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggctttgacgagttcaagttCaggttcacggatcgtgaacg	13	8	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	50744980	50744980	C	T	SNP	NOD2	ENST00000300589	human	ensembl	69_37n	1	known	silent	c.1158	p.F386	1.000	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207	49	0	0	22	6	21.43	-	-	-	T	50744980	C	T	50744980	2	4	55	1	0	0	0	0	0	0	0	1	10589	825	29	2		2	NOD2	16	50744980	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	36703340	50744980	39609773	138	2777										
SLC12A3	0	genome.wustl.edu	37	chr16	56924230	56924230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgtgtgtgtcatgaggatgcGggagggactcaacgtgtcca	16	8	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	56924230	56924230	G	A	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	missense	c.2330	p.R777Q	0.606	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	56	0	0	18	6	25	-	-	-	A	56924230	G	A	56924230	3	1	55	1	0	0	0	0	1	0	0	0	14473	1116	39	1	2404	1	SLC12A3	16	56924230	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	6179250	56924230	33430523	139	2778										
NLRC5	0	genome.wustl.edu	37	chr16	57075469	57075469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgggaggaagctgccacctCggtcacctccacctcgagtg	12	15	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	57075469	57075469	C	T	SNP	NLRC5	ENST00000540182	human	ensembl	69_37n	1	known	missense	c.104	p.S35L	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	242	0	0	97	31	24.22	-	-	-	T	57075469	C	T	57075469	3	4	55	1	0	0	0	0	1	0	0	0	10542	871	31	1	3074	1	NLRC5	16	57075469	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	151239	57075469	33279284	140	2779										
CDH11	0	genome.wustl.edu	37	chr16	65016037	65016037	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcattttcttggacttcgtgGatgtaacttggggccaagaa	12	7	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	65016037	65016037	G	A	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	silent	c.1167	p.I389	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	257	0	0	166	40	19.32	-	-	-	A	65016037	G	A	65016037	2	1	55	1	0	0	0	0	0	0	0	1	3126	1164	41	2		2	CDH11	16	65016037	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	7940568	65016037	25338716	141	2780										
HYDIN	0	genome.wustl.edu	37	chr16	70993581	70993581	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtcccatgaatgataatggcGatgcctttccggttcttggc	11	10	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	16	70993581	70993581	G	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.6108	p.I2036	0.997	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	162	0	0	93	25	20.83	-	-	-	A	70993581	G	A	70993581	2	1	55	1	0	0	0	0	0	0	0	1	7521	1048	37	1		1	HYDIN	16	70993581	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	5977544	70993581	19361172	142	2781										
TNK1	0	genome.wustl.edu	37	chr17	7286594	7286594	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgcagactgtccgaagctctGaaaaggctacgttctgggcc	12	12	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	7286594	7286594	G	A	SNP	TNK1	ENST00000576812	human	ensembl	69_37n	1	known	silent	c.189	p.L63	1.000	superfamily_SAM/pointed	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292	139	0	0	27	18	40	-	-	-	A	7286594	G	A	7286594	2	1	55	1	0	0	0	0	0	0	0	1	16412	1277	45	2		2	TNK1	17	7286594	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		7286594	73908616	143	2782										
TP53	0	genome.wustl.edu	37	chr17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aactgttacacatgtagttgTagtggatggtggtacagtca	12	5	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	7577580	7577580	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.701	p.Y234C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	240	0	0	78	55	40.44	-	-	-	C	7577580	T	C	7577580	3	2	55	1	0	0	0	0	1	0	0	0	16477	1638	57	5	589	5	TP53	17	7577580	Missense_Mutation	SNP	T	TCGA-A2-A0EY-01A-11W-A050-09	290986	7577580	73617630	144	2783										
RFFL	0	genome.wustl.edu	37	chr17	33344550	33344550	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cagaggccccacctgggtctCatcctcagcaggtactctgg	11	15	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	33344550	33344550	C	T	SNP	RFFL	ENST00000315249	human	ensembl	69_37n	-1	known	missense	c.667	p.E223K	0.996	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RFFL	HGNC	ENSG00000092871	184	0	0	88	67	42.14	-	-	-	T	33344550	C	T	33344550	3	4	55	1	0	0	0	0	1	0	0	0	13333	835	29	2	440	2	RFFL	17	33344550	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	25766970	33344550	47850660	145	2784										
CWC25	0	genome.wustl.edu	37	chr17	36958378	36958378	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	aagttcttctccagagctacCgaagttctctgtaaagagta	8	9	3	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	36958378	36958378	C	G	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	silent	c.1245	p.S415	0.031	NULL	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	108	0	0	27	20	41.67	-	-	-	G	36958378	C	G	36958378	2	3	55	1	0	0	0	0	0	0	0	1	4100	639	23	3		3	CWC25	17	36958378	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	3613828	36958378	44236832	146	2785										
CACNA1G	0	genome.wustl.edu	37	chr17	48693656	48693656	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	attctggatgaggctctgaaGatctgcaactacatcttcac	8	10	5	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	48693656	48693656	G	T	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.4932	p.K1644N	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	108	0	0	54	100	64.52	-	-	-	T	48693656	G	T	48693656	3	4	55	1	0	0	0	0	1	0	0	0	2569	933	33	2	5309	2	CACNA1G	17	48693656	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	11735278	48693656	32501554	147	2786										
CACNA1G	0	genome.wustl.edu	37	chr17	48695486	48695486	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtggagctctttggagacctGggtgagttggggtaggggag	21	4	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	48695486	48695486	G	C	SNP	CACNA1G	ENST00000506406	human	ensembl	69_37n	1	known	missense	c.5255	p.W1752S	0.997	NULL	pfam_Ion_trans_dom,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	71	0	0	55	81	59.56	-	-	-	C	48695486	G	C	48695486	3	2	55	1	0	0	0	0	1	0	0	0	2569	1362	47	4	5693	4	CACNA1G	17	48695486	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1830	48695486	32499724	148	2787										
GRIN2C	0	genome.wustl.edu	37	chr17	72850861	72850861	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgaggaccacagcagagcctCcgctgatgctgaggatgggc	15	11	0	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	72850861	72850861	C	G	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	missense	c.371	p.G124A	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	71	0	0	47	13	20.63	-	-	-	G	72850861	C	G	72850861	3	3	55	1	0	0	0	0	1	0	0	0	6832	855	30	2	3378	2	GRIN2C	17	72850861	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	24155375	72850861	8344349	149	2788										
ZACN	0	genome.wustl.edu	37	chr17	74077976	74077977	+	Frame_Shift_Del	DEL	CA	CA	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cccccagtttactacttcacCatcctgctgctgctgctctt							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	74077976	74077977	CA	-	DEL	ZACN	ENST00000334586	human	ensembl	69_37n	1	known	frame_shift_del	c.894_895	p.I299fs	0.001:0.001	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919	14	0	0	13	8	38.1	-	-	-	-	74077977	CA	-	74077976	7	5	55	1	0	1	0	1	0	0	0	0	17607	581	21	0	924	0	ZACN	17	74077976	Frame_Shift_Del	DEL	CA	TCGA-A2-A0EY-01A-11W-A050-09	1227115	74077976	7117234	150	2789										
MFSD11	0	genome.wustl.edu	37	chr17	74763467	74763467	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cttaaatttttgtgtttacaGaaaagtcttttaagttatgt	6	3	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	74763467	74763467	G	A	SNP	MFSD11	ENST00000336509	human	ensembl	69_37n	1	known	splice_site	c.683-1	e9-1	1.000	-	-	-	no_errors	MFSD11	HGNC	ENSG00000092931	110	0	0	66	56	45.9	-	-	-	A	74763467	G	A	74763467	5	1	55	1	0	0	0	0	0	0	1	0	9600	956	33	2	716	2	MFSD11	17	74763467	Splice_Site	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	685491	74763467	6431743	151	2790										
RPTOR	0	genome.wustl.edu	37	chr17	78923268	78923268	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggtgccatcagggtctggaaGaattttgctgatttggaaaa	13	5	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	17	78923268	78923268	G	A	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	silent	c.3291	p.K1097	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	64	0	0	16	4	20	-	-	-	A	78923268	G	A	78923268	2	1	55	1	0	0	0	0	0	0	0	1	13751	933	33	2		2	RPTOR	17	78923268	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4159801	78923268	2271942	152	2791										
ANKRD12	0	genome.wustl.edu	37	chr18	9256837	9256837	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tagcttaaacaggtctcctaGatcagaaaatgaaaagccgg	9	8	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	18	9256837	9256837	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.3572	p.R1191K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	31	0	0	24	11	31.43	-	-	-	A	9256837	G	A	9256837	3	1	55	1	0	0	0	0	1	0	0	0	640	942	33	2	3602	2	ANKRD12	18	9256837	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		9256837	68820411	153	2792										
MALT1	0	genome.wustl.edu	37	chr18	56412910	56412910	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttttacaggatctagatattGatccaaaagatgcaaataaa	6	5	1	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	18	56412910	56412910	G	A	SNP	MALT1	ENST00000348428	human	ensembl	69_37n	1	known	missense	c.1924	p.D642N	1.000	NULL	pfam_Pept_C14_cat,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_DEATH-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Pept_C14_ICE_p20,pfscan_Ig-like	-	no_errors	MALT1	HGNC	ENSG00000172175	100	0	0	98	29	22.31	-	-	-	A	56412910	G	A	56412910	3	1	55	1	0	0	0	0	1	0	0	0	9273	1290	45	2	1986	2	MALT1	18	56412910	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	47156073	56412910	21664338	154	2793										
TCF3	0	genome.wustl.edu	37	chr19	1632396	1632396	+	Frame_Shift_Del	DEL	C	C	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggagcctgagctgggccggtCctcaagacctgcaggcagga							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	1632396	1632396	C	-	DEL	TCF3	ENST00000262965	human	ensembl	69_37n	-1	known	frame_shift_del	c.154	p.D52fs	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF3	HGNC	ENSG00000071564	30	0	0	7	4	36.36	-	-	-	-	1632396	C	-	1632396	7	5	55	1	0	1	0	1	0	0	0	0	15789	855	30	0	2105	0	TCF3	19	1632396	Frame_Shift_Del	DEL	C	TCGA-A2-A0EY-01A-11W-A050-09		1632396	57496587	155	2794										
FEM1A	0	genome.wustl.edu	37	chr19	4793216	4793216	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tacgtgcttcaggaccgggcCgccaaaggcagcctgggcac	14	14	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	4793216	4793216	C	T	SNP	FEM1A	ENST00000269856	human	ensembl	69_37n	1	known	silent	c.1350	p.A450	0.101	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965	20	0	0	10	8	44.44	-	-	-	T	4793216	C	T	4793216	2	4	55	1	0	0	0	0	0	0	0	1	5855	639	23	1		1	FEM1A	19	4793216	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	3160820	4793216	54335767	156	2795										
ACP5	0	genome.wustl.edu	37	chr19	11687274	11687274	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	agcttcacgtctcggggcctCtcaggctgctggctgaggaa	14	12	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	11687274	11687274	C	A	SNP	ACP5	ENST00000218758	human	ensembl	69_37n	-1	known	missense	c.519	p.E173D	0.097	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom	-	no_errors	ACP5	HGNC	ENSG00000102575	77	0	0	33	13	27.66	-	-	-	A	11687274	C	A	11687274	3	1	55	1	0	0	0	0	1	0	0	0	164	912	32	2	466	2	ACP5	19	11687274	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	6894058	11687274	47441709	157	2796										
ZNF625	0	genome.wustl.edu	37	chr19	12256707	12256707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgtgtcttcgaatgcttgaaCgggaaataaagctttttcca	9	7	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	12256707	12256707	C	T	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	84	0	0	108	27	19.42	-	-	-	T	12256707	C	T	12256707	3	4	55	1	0	0	0	0	1	0	0	0	18145	536	19	1	598	1	ZNF625	19	12256707	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	569433	12256707	46872276	158	2797										
DHPS	0	genome.wustl.edu	37	chr19	12792473	12792473	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cggtaattcacaccgcggttGaagtcgtagccccggacctg	12	13	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	12792473	12792473	G	C	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	missense	c.108	p.F36L	1.000	tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	70	0	0	28	19	40.43	-	-	-	C	12792473	G	C	12792473	3	2	55	1	0	0	0	0	1	0	0	0	4521	1281	45	2	1037	2	DHPS	19	12792473	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	535766	12792473	46336510	159	2798										
ZNF626	0	genome.wustl.edu	37	chr19	20808023	20808023	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ttctctccagtatgaattttCttatgtctagtaaggctaca	6	8	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	20808023	20808023	C	G	SNP	ZNF626	ENST00000305570	human	ensembl	69_37n	-1	known	missense	c.660	p.K220N	0.777	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	36	0	0	40	19	32.2	-	-	-	G	20808023	C	G	20808023	3	3	55	1	0	0	0	0	1	0	0	0	18146	912	32	2	930	2	ZNF626	19	20808023	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	8015550	20808023	38320960	160	2799										
CLIP3	0	genome.wustl.edu	37	chr19	36517498	36517498	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tcctcctcacctcgcggcctCgcacccttcagcagcacacg	7	21	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	36517498	36517498	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	69_37n	-1	known	silent	c.552	p.A184	0.053	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270	108	0	0	65	8	10.96	-	-	-	T	36517498	C	T	36517498	2	4	55	1	0	0	0	0	0	0	0	1	3564	871	31	1		1	CLIP3	19	36517498	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	15709475	36517498	22611485	161	2800										
ZNF527	0	genome.wustl.edu	37	chr19	37880726	37880726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgaatgtgggaataattttaGctgtgtctcagcccttagac	10	8	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	37880726	37880726	G	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.1775	p.S592I	0.086	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	40	0	0	54	12	18.18	-	-	-	T	37880726	G	T	37880726	3	4	55	1	0	0	0	0	1	0	0	0	18064	971	34	4	1789	4	ZNF527	19	37880726	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1363228	37880726	21248257	162	2801										
HNRNPL	0	genome.wustl.edu	37	chr19	39329054	39329054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cacctcaaagaagttctcctCggtcacctccagcggggcgt	10	15	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	39329054	39329054	C	T	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514K	0.991	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	137	0	0	48	11	18.03	-	-	-	T	39329054	C	T	39329054	3	4	55	1	0	0	0	0	1	0	0	0	7321	893	31	1	245	1	HNRNPL	19	39329054	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1448328	39329054	19799929	163	2802										
LGALS14	0	genome.wustl.edu	37	chr19	40196643	40196643	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggacgtccattgcccttgatGattgtggtgcgtgtacatcc	12	10	0	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	40196643	40196643	G	T	SNP	LGALS14	ENST00000360675	human	ensembl	69_37n	1	known	missense	c.96	p.M32I	0.009	superfamily_ConA-like_lec_gl	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659	182	0	0	197	61	23.37	-	-	-	T	40196643	G	T	40196643	3	4	55	1	0	0	0	0	1	0	0	0	8795	1290	45	2	117	2	LGALS14	19	40196643	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	867589	40196643	18932340	164	2803										
ATP1A3	0	genome.wustl.edu	37	chr19	42472978	42472978	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gagttcctccgggtcttgcaGatgatcagatcggcccactg	12	12	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	42472978	42472978	G	A	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	silent	c.2817	p.I939	1.000	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	149	0	0	122	19	13.29	-	-	-	A	42472978	G	A	42472978	2	1	55	1	0	0	0	0	0	0	0	1	1134	932	33	2		2	ATP1A3	19	42472978	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	2276335	42472978	16656005	165	2804										
ZNF473	0	genome.wustl.edu	37	chr19	50550264	50550264	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaagcctttcggtgccactCgagcctcagccgccatcagc	10	16	2	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	50550264	50550264	C	G	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	missense	c.2564	p.S855W	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	41	0	0	45	14	22.95	-	-	-	G	50550264	C	G	50550264	3	3	55	1	0	0	0	0	1	0	0	0	18027	893	31	3	2578	3	ZNF473	19	50550264	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	8077286	50550264	8578719	166	2805										
SHANK1	0	genome.wustl.edu	37	chr19	51215349	51215349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gacggtccttgtagttggggGaacccccaaggtccaggagc	15	11	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	51215349	51215349	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.815	p.S272F	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	37	0	0	16	19	54.29	-	-	-	A	51215349	G	A	51215349	3	1	55	1	0	0	0	0	1	0	0	0	14353	1174	41	2	5742	2	SHANK1	19	51215349	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	665085	51215349	7913634	167	2806										
NLRP7	0	genome.wustl.edu	37	chr19	55451001	55451001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaccggctgcagaggaaacGcaggaacagccccgtgcggg	16	12	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	55451001	55451001	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1270	p.R424C	0.039	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	18	0	0	11	5	31.25	-	-	-	A	55451001	G	A	55451001	3	1	55	1	0	0	0	0	1	0	0	0	10554	1087	38	1	1959	1	NLRP7	19	55451001	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4235652	55451001	3677982	168	2807										
NLRP13	0	genome.wustl.edu	37	chr19	56424553	56424553	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cgctgcagttcctcatgttcGtcctttgatgtattacggat	9	10	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	56424553	56424553	G	A	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	silent	c.630	p.D210	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	102	0	0	112	17	13.18	-	-	-	A	56424553	G	A	56424553	2	1	55	1	0	0	0	0	0	0	0	1	10547	1136	40	1		1	NLRP13	19	56424553	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	973552	56424553	2704430	169	2808										
ZNF211	0	genome.wustl.edu	37	chr19	58152315	58152315	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgcaaatcttcaacagcaccAgaggcagcacattacagagg	9	11	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	58152315	58152315	A	T	SNP	ZNF211	ENST00000240731	human	ensembl	69_37n	1	known	missense	c.500	p.Q167L	0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417	136	0	0	81	14	14.58	-	-	-	T	58152315	A	T	58152315	3	4	55	1	0	0	0	0	1	0	0	0	17863	188	7	5	514	5	ZNF211	19	58152315	Missense_Mutation	SNP	A	TCGA-A2-A0EY-01A-11W-A050-09	1727762	58152315	976668	170	2809										
ZNF587	0	genome.wustl.edu	37	chr19	58370801	58370801	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtcaaaagggtaacctcattCaacatcagcaaggtcacact	7	11	5	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	19	58370801	58370801	C	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	nonsense	c.1021	p.Q341*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	229	0	0	187	40	17.39	-	-	-	T	58370801	C	T	58370801	4	4	55	1	0	0	0	0	0	1	0	0	18116	827	29	2	1031	2	ZNF587	19	58370801	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	218486	58370801	758182	171	2810										
RIN2	0	genome.wustl.edu	37	chr20	19955639	19955639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atagtctccacacaagccctCggctggccaggactgaaacc	9	15	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	20	19955639	19955639	C	G	SNP	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	missense	c.1117	p.R373G	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	76	0	0	42	6	12.24	-	-	-	G	19955639	C	G	19955639	3	3	55	1	0	0	0	0	1	0	0	0	13458	875	31	3	996	3	RIN2	20	19955639	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		19955639	43069881	172	2811										
PLAGL2	0	genome.wustl.edu	37	chr20	30784659	30784659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcttccaggaagctccgccaGaaaactatccacctccactt	6	16	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	20	30784659	30784659	G	C	SNP	PLAGL2	ENST00000246229	human	ensembl	69_37n	-1	known	missense	c.1087	p.L363V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003	129	0	0	47	10	17.54	-	-	-	C	30784659	G	C	30784659	3	2	55	1	0	0	0	0	1	0	0	0	12094	933	33	2	407	2	PLAGL2	20	30784659	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	10829020	30784659	32240861	173	2812										
SALL4	0	genome.wustl.edu	37	chr20	50405595	50405595	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtcatccctggggacaatgtCgagggtcccacaaatgtgcc	12	12	1	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	20	50405595	50405595	C	T	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	silent	c.2547	p.S849	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	85	0	0	48	26	35.14	-	-	-	T	50405595	C	T	50405595	2	4	55	1	0	0	0	0	0	0	0	1	13899	871	31	1		1	SALL4	20	50405595	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	19620936	50405595	12619925	174	2813										
PTK6	0	genome.wustl.edu	37	chr20	62163969	62163969	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	caccacggcgtacagcgccaGgatgtgtttgtgccgcagct	13	13	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	20	62163969	62163969	G	A	SNP	PTK6	ENST00000217185	human	ensembl	69_37n	-1	known	silent	c.742	p.L248	0.974	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	PTK6	HGNC	ENSG00000101213	30	0	0	26	6	18.18	-	-	-	A	62163969	G	A	62163969	2	1	55	1	0	0	0	0	0	0	0	1	12845	991	35	4		4	PTK6	20	62163969	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	11758374	62163969	861551	175	2814										
KRTAP6-1	0	genome.wustl.edu	37	chr21	31986193	31986193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaacccatagccaggggtgcCatagtagtttccgtagtagc	12	10	0	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	21	31986193	31986193	C	T	SNP	KRTAP6-1	ENST00000329122	human	ensembl	69_37n	-1	known	missense	c.31	p.G11S	0.980	NULL	NULL	-	no_errors	KRTAP6-1	HGNC	ENSG00000184724	420	0	0	620	78	11.11	-	-	-	T	31986193	C	T	31986193	3	4	55	1	0	0	0	0	1	0	0	0	8623	594	21	4	188	4	KRTAP6-1	21	31986193	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		31986193	16143702	176	2815										
UMODL1	0	genome.wustl.edu	37	chr21	43496237	43496237	+	Frame_Shift_Del	DEL	G	G	-													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgcggcggctggatcccctGgaggcggtgccctaagatgg							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	21	43496237	43496237	G	-	DEL	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	frame_shift_del	c.200	p.W67fs	0.214	pfam_EMI_domain,pfscan_EMI_domain	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	60	0	0	42	12	21.82	-	-	-	-	43496237	G	-	43496237	7	5	55	1	0	1	0	1	0	0	0	0	17077	1357	47	0	206	0	UMODL1	21	43496237	Frame_Shift_Del	DEL	G	TCGA-A2-A0EY-01A-11W-A050-09	11510044	43496237	4633658	177	2816	23	2								
UMODL1	0	genome.wustl.edu	37	chr21	43496238	43496238	+	Missense_Mutation	SNP	G	G	C													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgcggcggctggatcccctgGaggcggtgccctaagatggt							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	21	43496238	43496238	G	C	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.201	p.W67C	0.188	pfam_EMI_domain,pfscan_EMI_domain	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	60	0	0	43	13	23.21	-	-	-	C	43496238	G	C	43496238	3	2	55	1	0	0	0	0	1	0	0	0	17077	1183	41	2	207	2	UMODL1	21	43496238	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1	43496238	4633657	178	2817	23	2								
DIP2A	0	genome.wustl.edu	37	chr21	47957380	47957380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcgtcatgaacaggatgcacGtggtcagcgtcccctacgcg	13	13	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	21	47957380	47957380	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.1732	p.V578M	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	88	0	0	46	9	16.36	-	-	-	A	47957380	G	A	47957380	3	1	55	1	0	0	0	0	1	0	0	0	4563	1145	40	1	1787	1	DIP2A	21	47957380	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4461142	47957380	172515	179	2818										
SGSM1	0	genome.wustl.edu	37	chr22	25301121	25301121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	atgtccagggcatgtgtgatCttctggctccactgctggtc	12	11	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	22	25301121	25301121	C	G	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.2950	p.L984V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	186	0	0	169	38	18.36	-	-	-	G	25301121	C	G	25301121	3	3	55	1	0	0	0	0	1	0	0	0	14310	913	32	2	3036	2	SGSM1	22	25301121	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09		25301121	26003445	180	2819										
SH3BP1	0	genome.wustl.edu	37	chr22	38040966	38040967	+	Frame_Shift_Ins	INS	-	-	G													0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gggagaaccacggccaagcaINSggtggggacataggcccggc							TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	22	38040966	38040967	-	G	INS	SH3BP1	ENST00000357436	human	ensembl	69_37n	1	known	frame_shift_ins	c.777_778	p.D259fs	1.000:1.000	pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	16	0	0	21	10	32.26	-	-	-	G	38040967	-	G	38040966	7	5	55	1	0	1	1	0	0	0	0	0	14332	202	7	0	811	0	SH3BP1	22	38040966	Frame_Shift_Ins	INS	-	TCGA-A2-A0EY-01A-11W-A050-09	12739845	38040966	13263600	181	2820										
BAIAP2L2	0	genome.wustl.edu	37	chr22	38494435	38494435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cactttgatgaactgcatgtCcagcttggtgttcttctcca	8	11	2	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	22	38494435	38494435	C	T	SNP	BAIAP2L2	ENST00000381669	human	ensembl	69_37n	-1	known	missense	c.331	p.D111N	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298	104	0	0	100	22	18.03	-	-	-	T	38494435	C	T	38494435	3	4	55	1	0	0	0	0	1	0	0	0	1307	855	30	2	1298	2	BAIAP2L2	22	38494435	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	453469	38494435	12810131	182	2821										
PDHA1	0	genome.wustl.edu	37	chrX	19373834	19373834	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tggatatcctgtgcgtccgaGaggcaacaaggtttgctgct	13	9	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	19373834	19373834	G	A	SNP	PDHA1	ENST00000379806	human	ensembl	69_37n	1	known	missense	c.904	p.E302K	1.000	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828	174	0	0	161	49	23.22	-	-	-	A	19373834	G	A	19373834	3	1	55	1	0	0	0	0	1	0	0	0	11737	943	33	2	959	2	PDHA1	23	19373834	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09		19373834	135896726	183	2822										
MBTPS2	0	genome.wustl.edu	37	chrX	21857900	21857900	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtggtgggtggctggactgtCgtctacctgaccgacttggt	16	9	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	21857900	21857900	C	T	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	silent	c.48	p.V16	0.958	NULL	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	82	0	0	52	14	21.21	-	-	-	T	21857900	C	T	21857900	2	4	55	1	0	0	0	0	0	0	0	1	9433	871	31	1		1	MBTPS2	23	21857900	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	2484066	21857900	133412660	184	2823										
DCAF8L1	0	genome.wustl.edu	37	chrX	27998944	27998944	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggcctcatatacaaagcgggCacttgaacccagctgccgct	10	14	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	27998944	27998944	C	A	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.508	p.A170S	0.757	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	92	0	0	102	19	15.57	-	-	-	A	27998944	C	A	27998944	3	1	55	1	0	0	0	0	1	0	0	0	4309	710	25	4	1298	4	DCAF8L1	23	27998944	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	6141044	27998944	127271616	185	2824										
TMEM47	0	genome.wustl.edu	37	chrX	34657505	34657505	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cagagtagcaatctgccaatCtggaaagaaaaaagaaattg	9	6	2	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	34657505	34657505	C	T	SNP	TMEM47	ENST00000275954	human	ensembl	69_37n	-1	known	splice_site	c.227-1	e2-1	1.000	-	-	-	no_errors	TMEM47	HGNC	ENSG00000147027	150	0	0	265	46	14.74	-	-	-	T	34657505	C	T	34657505	5	4	55	1	0	0	0	0	0	0	1	0	16266	927	32	2	327	2	TMEM47	23	34657505	Splice_Site	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	6658561	34657505	120613055	186	2825										
EFHC2	0	genome.wustl.edu	37	chrX	44109464	44109464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggtagcttactcctccggagGaacatttttagagcatctcg	10	10	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	44109464	44109464	G	T	SNP	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	missense	c.834	p.F278L	0.998	pfam_DUF1126,smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	51	0	0	62	11	15.07	-	-	-	T	44109464	G	T	44109464	3	4	55	1	0	0	0	0	1	0	0	0	4982	1165	41	2	1459	2	EFHC2	23	44109464	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	9451959	44109464	111161096	187	2826										
MAGIX	0	genome.wustl.edu	37	chrX	49021148	49021148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gtaccatctcatccttctatCggaggcctcctgcctcaggg	9	15	3	0			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	49021148	49021148	C	T	SNP	MAGIX	ENST00000376338	human	ensembl	69_37n	1	known	missense	c.50	p.S17L	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	85	0	0	67	8	10.67	-	-	-	T	49021148	C	T	49021148	3	4	55	1	0	0	0	0	1	0	0	0	9264	899	31	1		1	MAGIX	23	49021148	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	4911684	49021148	106249412	188	2827										
IQSEC2	0	genome.wustl.edu	37	chrX	53276155	53276155	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ctgacagggaagtcacctctCaggttcttgatgaagtcatc	10	10	4	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	53276155	53276155	C	T	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	silent	c.2745	p.L915	0.998	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	154	0	0	119	23	15.97	-	-	-	T	53276155	C	T	53276155	2	4	55	1	0	0	0	0	0	0	0	1	7872	813	29	2		2	IQSEC2	23	53276155	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	4255007	53276155	101994405	189	2828										
PDZD11	0	genome.wustl.edu	37	chrX	69509159	69509159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	taggcaggcaagaaaaccacCgggtagtcatcataaggaat	11	8	2	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	69509159	69509159	C	T	SNP	PDZD11	ENST00000239666	human	ensembl	69_37n	-1	known	silent	c.33	p.P11	0.170	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD11	HGNC	ENSG00000120509	236	0	0	139	34	19.65	-	-	-	T	69509159	C	T	69509159	2	4	55	1	0	0	0	0	0	0	0	1	11773	639	23	1		1	PDZD11	23	69509159	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	16233004	69509159	85761401	190	2829										
KIF4A	0	genome.wustl.edu	37	chrX	69615655	69615655	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gaaaaaaaggaatctggggaGaatccacctcctaaactccg	9	10	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	69615655	69615655	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	silent	c.2367	p.E789	0.975	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	100	0	0	77	59	43.07	-	-	-	A	69615655	G	A	69615655	2	1	55	1	0	0	0	0	0	0	0	1	8355	933	33	2		2	KIF4A	23	69615655	Silent	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	106496	69615655	85654905	191	2830										
ERCC6L	0	genome.wustl.edu	37	chrX	71425689	71425689	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ccacacaagctattttctttCtcaacatgctctaaagactg	4	12	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	71425689	71425689	C	G	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.2928	p.E976D	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	171	0	0	51	33	39.29	-	-	-	G	71425689	C	G	71425689	3	3	55	1	0	0	0	0	1	0	0	0	5255	912	32	2	828	2	ERCC6L	23	71425689	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1810034	71425689	83844871	192	2831										
TRMT2B	0	genome.wustl.edu	37	chrX	100275496	100275496	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	cattgaaggctgcagtccatCttgcatcctccactgcctgc	8	15	1	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	100275496	100275496	C	T	SNP	TRMT2B	ENST00000372935	human	ensembl	69_37n	-1	known	missense	c.1148	p.R383K	1.000	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917	148	0	0	138	36	20.57	-	-	-	T	100275496	C	T	100275496	3	4	55	1	0	0	0	0	1	0	0	0	16662	913	32	2	382	2	TRMT2B	23	100275496	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	28849807	100275496	54995064	193	2832										
COL4A5	0	genome.wustl.edu	37	chrX	107834341	107834341	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gatttcctggagaaaggggtCagaaaggtgatgaaggacca	15	5	1	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	107834341	107834341	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	nonsense	c.1219	p.Q407*	0.998	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	209	0	0	183	39	17.41	-	-	-	T	107834341	C	T	107834341	4	4	55	1	0	0	0	0	0	1	0	0	3724	827	29	2	1297	2	COL4A5	23	107834341	Nonsense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	7558845	107834341	47436219	194	2833										
RGAG1	0	genome.wustl.edu	37	chrX	109694797	109694797	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	taatgtcatctccaggctctGaagtaatgtccacaccgcta	7	12	3	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	109694797	109694797	G	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.952	p.E318K	0.009	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	245	0	0	101	46	31.08	-	-	-	A	109694797	G	A	109694797	3	1	55	1	0	0	0	0	1	0	0	0	13357	1291	45	2	954	2	RGAG1	23	109694797	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	1860456	109694797	45575763	195	2834										
TRPC5	0	genome.wustl.edu	37	chrX	111155925	111155925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggggccgtgggatagtgaccCgtttttggacaagcaatttg	15	7	0	1			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	111155925	111155925	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.494	p.R165Q	1.000	smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	65	0	0	96	26	20.97	-	-	-	T	111155925	C	T	111155925	3	4	55	1	0	0	0	0	1	0	0	0	16678	652	23	1	2463	1	TRPC5	23	111155925	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	1461128	111155925	44114635	196	2835										
LONRF3	0	genome.wustl.edu	37	chrX	118123503	118123503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tgaaagaccaggaagaagagGaggagaagtgggatgctacc	16	5	0	5			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	118123503	118123503	G	C	SNP	LONRF3	ENST00000371628	human	ensembl	69_37n	1	known	missense	c.1192	p.E398Q	0.244	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF3	HGNC	ENSG00000175556	358	0	0	254	107	29.32	-	-	-	C	118123503	G	C	118123503	3	2	55	1	0	0	0	0	1	0	0	0	8962	1175	41	2	1206	2	LONRF3	23	118123503	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	6967578	118123503	37147057	197	2836										
GRIA3	0	genome.wustl.edu	37	chrX	122532572	122532572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	gcagcgagtagatgtgtcccGgagaggaagtgctggagact	17	7	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	122532572	122532572	G	T	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.998	p.R333L	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	100	0	0	84	23	21.1	-	-	-	T	122532572	G	T	122532572	3	4	55	1	0	0	0	0	1	0	0	0	6820	1116	39	3	1024	3	GRIA3	23	122532572	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	4409069	122532572	32737988	198	2837										
OCRL	0	genome.wustl.edu	37	chrX	128674765	128674765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ggtcctctccgggagccctgCgccctgaccctagcccagag	12	18	1	2			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	128674765	128674765	C	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	silent	c.84	p.C28	0.991	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	76	0	0	63	26	28.89	-	-	-	T	128674765	C	T	128674765	2	4	55	1	0	0	0	0	0	0	0	1	10896	776	27	1		1	OCRL	23	128674765	Silent	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	6142193	128674765	26595795	199	2838										
F9	0	genome.wustl.edu	37	chrX	138630621	138630621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	tactgagggatatcgacttgCagaaaaccagaagtcctgtg	11	8	0	3			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	138630621	138630621	C	T	SNP	F9	ENST00000218099	human	ensembl	69_37n	1	known	missense	c.491	p.A164V	1.000	smart_EGF-like,pirsf_Pept_S1A_FX	pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981	206	0	0	169	87	33.33	-	-	-	T	138630621	C	T	138630621	3	4	55	1	0	0	0	0	1	0	0	0	5391	710	25	4	509	4	F9	23	138630621	Missense_Mutation	SNP	C	TCGA-A2-A0EY-01A-11W-A050-09	9955856	138630621	16639939	200	2839										
AFF2	0	genome.wustl.edu	37	chrX	147891430	147891430	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.475	95	2.5738891464469e-32	3.77034321005357	4.41793232623478	3.5527108021566	1.1067223205329e-07	1.35296803685147e-05	70	ccagtgatccaagctgtgttGaagaaatcttgcgggtgagt	13	7	1	4			TCGA-A2-A0EY-01A-11W-A050-09	TCGA-A2-A0EY-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8cde596-e3f5-4b20-9e7f-45d079893176	b1d7c034-0cf5-40ce-8620-35248ca45e08	X	147891430	147891430	G	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.1072	p.E358K	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	803	0	0	853	509	36.99	-	-	-	A	147891430	G	A	147891430	3	1	55	1	0	0	0	0	1	0	0	0	357	1291	45	2	1141	2	AFF2	23	147891430	Missense_Mutation	SNP	G	TCGA-A2-A0EY-01A-11W-A050-09	9260809	147891430	7379130	201	2840										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	91	0	0	32	4	11.11	-	-	-	A	12980232	G	A	12980232	2	1	56	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-A2-A0ST-01A-12D-A099-09		12980232	236270389	1	2841										
PEX11B	0	genome.wustl.edu	37	chr1	145522575	145522575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	cttatgagattcgcctactgAtggagcaagagtcttctgct	10	9	2	3			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	1	145522575	145522575	A	G	SNP	PEX11B	ENST00000369306	human	ensembl	69_37n	1	known	missense	c.436	p.M146V	1.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	145	0	0	80	12	13.04	-	-	-	G	145522575	A	G	145522575	3	3	56	1	0	0	0	0	1	0	0	0	11812	333	12	5	468	5	PEX11B	1	145522575	Missense_Mutation	SNP	A	TCGA-A2-A0ST-01A-12D-A099-09	132542343	145522575	103728046	2	2842										
EAF1	0	genome.wustl.edu	37	chr3	15469355	15469355	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	aggctcggggagagcttcgaGaagcggccgcgggcctcctt	17	12	0	2			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	3	15469355	15469355	G	A	SNP	EAF1	ENST00000396842	human	ensembl	69_37n	1	known	silent	c.69	p.E23	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF1	HGNC	ENSG00000144597	35	0	0	51	6	10.53	-	-	-	A	15469355	G	A	15469355	2	1	56	1	0	0	0	0	0	0	0	1	4910	933	33	2		2	EAF1	3	15469355	Silent	SNP	G	TCGA-A2-A0ST-01A-12D-A099-09		15469355	182553075	3	2843										
FANCE	0	genome.wustl.edu	37	chr6	35423973	35423973	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	agaagatcatgagaaggagaGacccgaacataagtcactgg	12	7	2	4			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	6	35423973	35423973	G	A	SNP	FANCE	ENST00000229769	human	ensembl	69_37n	1	known	missense	c.698	p.R233K	0.000	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039	114	0	0	54	10	15.62	-	-	-	A	35423973	G	A	35423973	3	1	56	1	0	0	0	0	1	0	0	0	5712	942	33	2	704	2	FANCE	6	35423973	Missense_Mutation	SNP	G	TCGA-A2-A0ST-01A-12D-A099-09		35423973	135691094	4	2844										
ARHGAP21	0	genome.wustl.edu	37	chr10	24923969	24923969	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	atccagcttcaaaagcaggtCctccttctttaacttgctta	5	12	2	0			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	10	24923969	24923969	C	A	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.332	p.G111V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	127	0	0	200	26	11.5	-	-	-	A	24923969	C	A	24923969	3	1	56	1	0	0	0	0	1	0	0	0	873	855	30	2	5632	2	ARHGAP21	10	24923969	Missense_Mutation	SNP	C	TCGA-A2-A0ST-01A-12D-A099-09		24923969	110610778	5	2845										
ABCC11	0	genome.wustl.edu	37	chr16	48204014	48204014	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	cacacggcagtggtggcctcAccttggagttgcgaagcaca	13	12	1	0			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	16	48204014	48204014	A	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	splice_site	c.3891+2	e27+2	1.000	-	-	-	no_errors	ABCC11	HGNC	ENSG00000121270	79	0	0	36	6	14.29	-	-	-	C	48204014	A	C	48204014	5	2	56	1	0	0	0	0	0	0	1	0	51	173	6	5	267	5	ABCC11	16	48204014	Splice_Site	SNP	A	TCGA-A2-A0ST-01A-12D-A099-09		48204014	42150739	6	2846										
RNASEH2A	0	genome.wustl.edu	37	chr19	12917877	12917877	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	3	0.0604343339837314	5	NA	5	0.1	0.5224358974359	0	cctcgcctggcagatctggaGgcgctgaaagtggcaggtga	16	10	1	3			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	19	12917877	12917877	G	A	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	1	known	silent	c.183	p.E61	1.000	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	110	0	0	62	10	13.89	-	-	-	A	12917877	G	A	12917877	2	1	56	1	0	0	0	0	0	0	0	1	13498	991	35	4		4	RNASEH2A	19	12917877	Silent	SNP	G	TCGA-A2-A0ST-01A-12D-A099-09		12917877	46211106	7	2847										
FNDC7	0	genome.wustl.edu	37	chr1	109268547	109268547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	aacttcttatctgagtgtggCttcacttattttattagtgt	7	6	3	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	1	109268547	109268547	C	T	SNP	FNDC7	ENST00000445274	human	ensembl	69_37n	1	novel	missense	c.358	p.L120F	0.999	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC7	HGNC	ENSG00000143107	129	0	0	125	46	26.9	-	-	-	T	109268547	C	T	109268547	3	4	57	1	0	0	0	0	1	0	0	0	6019	784	28	4	1054	4	FNDC7	1	109268547	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09		109268547	139982074	1	2848										
REG3A	0	genome.wustl.edu	37	chr2	79384752	79384752	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	gcttgagatggtggagggatTtctctcccatgcaaagtaat	12	7	1	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	2	79384752	79384752	T	A	SNP	REG3A	ENST00000305165	human	ensembl	69_37n	-1	known	missense	c.406	p.N136Y	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3A	HGNC	ENSG00000172016	100	0	0	107	38	26.21	-	-	-	A	79384752	T	A	79384752	3	1	57	1	0	0	0	0	1	0	0	0	13295	1841	64	5	129	5	REG3A	2	79384752	Missense_Mutation	SNP	T	TCGA-A2-A0SU-01A-11D-A099-09		79384752	163814621	2	2849										
IFT122	0	genome.wustl.edu	37	chr3	129207141	129207141	+	Frame_Shift_Del	DEL	G	G	-													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ctggataggaaactgttcaaGgaagcctaccagattgcttg							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	3	129207141	129207141	G	-	DEL	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	frame_shift_del	c.2046	p.E683fs	0.993	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	118	0	0	104	25	19.08	-	-	-	-	129207141	G	-	129207141	7	5	57	1	0	1	0	1	0	0	0	0	7609	991	35	0	2112	0	IFT122	3	129207141	Frame_Shift_Del	DEL	G	TCGA-A2-A0SU-01A-11D-A099-09		129207141	68815289	3	2850										
RGS12	0	genome.wustl.edu	37	chr4	3318650	3318650	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tccaacctggagtccgacagCttgcaagccatccgcggctg	11	15	0	0			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	4	3318650	3318650	C	A	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	missense	c.753	p.S251R	0.002	smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	22	0	0	24	6	20	-	-	-	A	3318650	C	A	3318650	3	1	57	1	0	0	0	0	1	0	0	0	13379	796	28	4	755	4	RGS12	4	3318650	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09		3318650	187835626	4	2851										
MOXD1	0	genome.wustl.edu	37	chr6	132643998	132643998	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tgaattccacttggcttttcGgcttccagagcctacaggag	10	11	0	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	6	132643998	132643998	G	A	SNP	MOXD1	ENST00000367963	human	ensembl	69_37n	-1	known	silent	c.1125	p.A375	0.992	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931	90	0	0	60	24	28.57	-	-	-	A	132643998	G	A	132643998	2	1	57	1	0	0	0	0	0	0	0	1	9792	1103	39	1		1	MOXD1	6	132643998	Silent	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09		132643998	38471069	5	2852										
KIAA1244	0	genome.wustl.edu	37	chr6	138599688	138599688	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	gctgcacactgcgccctgctCctcaacctgaagctctccca	7	19	2	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	6	138599688	138599688	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	silent	c.2229	p.L743	0.943	superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	104	0	0	79	27	25.47	-	-	-	T	138599688	C	T	138599688	2	4	57	1	0	0	0	0	0	0	0	1	8269	842	30	2		2	KIAA1244	6	138599688	Silent	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09	5955690	138599688	32515379	6	2853										
GCC1	0	genome.wustl.edu	37	chr7	127222606	127222606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ccagttccaagtccttctcgGtgagcacagctagggcacga	11	13	1	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	7	127222606	127222606	G	A	SNP	GCC1	ENST00000321407	human	ensembl	69_37n	-1	known	missense	c.1790	p.T597I	0.029	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562	40	0	0	24	16	40	-	-	-	A	127222606	G	A	127222606	3	1	57	1	0	0	0	0	1	0	0	0	6335	1261	44	4	541	4	GCC1	7	127222606	Missense_Mutation	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09		127222606	31916057	7	2854										
KIAA1147	0	genome.wustl.edu	37	chr7	141365068	141365076	+	In_Frame_Del	DEL	TGCCCCCGA	TGCCCCCGA	-													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	aggtttggactcaggaatggTgcccccgatgccaggcagtg							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	TGCCCCCGA	TGCCCCCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	7	141365068	141365076	TGCCCCCGA	-	DEL	KIAA1147	ENST00000536163	human	ensembl	69_37n	-1	known	in_frame_del	c.871_863	p.IGG288in_frame_del	0.996:0.992:1.000:1.000:0.997:1.000:0.999:0.454:0.991	pfam_DUF2347	pfam_DUF2347	-	no_errors	KIAA1147	HGNC	ENSG00000257093	116	0	0	124	21	14.48	-	-	-	-	141365076	TGCCCCCGA	-	141365068	7	5	57	1	0	1	0	1	0	0	0	0	8262	1696	59	0	512	0	KIAA1147	7	141365068	In_Frame_Del	DEL	TGCCCCCGA	TCGA-A2-A0SU-01A-11D-A099-09	14142462	141365068	17773595	8	2855										
TAS2R5	0	genome.wustl.edu	37	chr7	141490297	141490297	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tcaactggtcctcatataacCtcattatcctgggcctggct	7	13	3	0			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	7	141490297	141490297	C	G	SNP	TAS2R5	ENST00000247883	human	ensembl	69_37n	1	known	missense	c.136	p.L46V	0.007	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R5	HGNC	ENSG00000127366	159	0	0	207	59	22.18	-	-	-	G	141490297	C	G	141490297	3	3	57	1	0	0	0	0	1	0	0	0	15675	681	24	4	138	4	TAS2R5	7	141490297	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09	125229	141490297	17648366	9	2856										
GIMAP7	0	genome.wustl.edu	37	chr7	150217162	150217162	+	Frame_Shift_Del	DEL	T	T	-													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ccatccttggagaggaaatcTttgattctagaattgctgcc							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	7	150217162	150217162	T	-	DEL	GIMAP7	ENST00000313543	human	ensembl	69_37n	1	known	frame_shift_del	c.100	p.F34fs	0.796	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP7	HGNC	ENSG00000179144	71	0	0	36	4	10	-	-	-	-	150217162	T	-	150217162	7	5	57	1	0	1	0	1	0	0	0	0	6436	1609	56	0	102	0	GIMAP7	7	150217162	Frame_Shift_Del	DEL	T	TCGA-A2-A0SU-01A-11D-A099-09	8726865	150217162	8921501	10	2857										
TRAPPC9	0	genome.wustl.edu	37	chr8	141294029	141294029	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tgcagtcttggcaacgcgggAatgacttccactgtggagcc	13	11	1	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	8	141294029	141294029	A	C	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.2367	p.I789M	0.936	pfam_TRAPP_II_complex_Trs120	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	95	0	0	86	26	23.21	-	-	-	C	141294029	A	C	141294029	3	2	57	1	0	0	0	0	1	0	0	0	16561	242	9	5	1413	5	TRAPPC9	8	141294029	Missense_Mutation	SNP	A	TCGA-A2-A0SU-01A-11D-A099-09		141294029	5069993	11	2858										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	77	0	0	104	27	20.61	-	-	-	G	8115875	-	G	8115874	7	5	57	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-A2-A0SU-01A-11D-A099-09		8115874	127418873	12	2859										
UBC	0	genome.wustl.edu	37	chr12	125397063	125397063	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	aaagatcaacctctgctggtCaggagggatgccttccttgt	11	10	3	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	12	125397063	125397063	C	A	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.1255	p.D419Y	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	120	0	0	234	38	13.97	-	-	-	A	125397063	C	A	125397063	3	1	57	1	0	0	0	0	1	0	0	0	16939	826	29	2	806	2	UBC	12	125397063	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09		125397063	8454832	13	2860										
CACNA1H	0	genome.wustl.edu	37	chr16	1260048	1260048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	cccacagagctgctgcctccGcctgcataaagtgctggagc	11	15	0	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	16	1260048	1260048	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.3758	p.R1253H	0.769	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	16	0	0	42	12	22.22	-	-	-	A	1260048	G	A	1260048	3	1	57	1	0	0	0	0	1	0	0	0	2570	1087	38	1	3824	1	CACNA1H	16	1260048	Missense_Mutation	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09		1260048	89094705	14	2861										
ADAMTS18	0	genome.wustl.edu	37	chr16	77326976	77326976	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tgacttctaatccatacctcGctccacgaagaagcgaccca	6	15	1	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	16	77326976	77326976	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.3186	p.S1062	0.996	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	73	0	0	32	21	39.62	-	-	-	A	77326976	G	A	77326976	2	1	57	1	0	0	0	0	0	0	0	1	263	1078	38	1		1	ADAMTS18	16	77326976	Silent	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09	76066928	77326976	13027777	15	2862										
ACACA	0	genome.wustl.edu	37	chr17	35468534	35468534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ttttcaccagatcctttctgCggaatttgatttctactgtc	6	10	3	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	35468534	35468534	C	T	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.6497	p.R2166H	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	182	0	0	176	40	18.52	-	-	-	T	35468534	C	T	35468534	3	4	57	1	0	0	0	0	1	0	0	0	106	768	27	1	674	1	ACACA	17	35468534	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09		35468534	45726676	16	2863										
PNMT	0	genome.wustl.edu	37	chr17	37825994	37825994	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	atgacagatttcctggaggtCaaccgccaggagctggggcg	15	10	1	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	37825994	37825994	C	G	SNP	PNMT	ENST00000269582	human	ensembl	69_37n	1	known	silent	c.315	p.V105	1.000	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744	34	0	0	46	6	11.54	-	-	-	G	37825994	C	G	37825994	2	3	57	1	0	0	0	0	0	0	0	1	12233	813	29	2		2	PNMT	17	37825994	Silent	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09	2357460	37825994	43369216	17	2864										
ACLY	0	genome.wustl.edu	37	chr17	40025782	40025782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	aatcgagcagaggagtggcaGggaagtgctgcctgacgtaa	16	7	0	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	40025782	40025782	G	A	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.2996	p.P999L	1.000	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	211	0	0	172	72	29.51	-	-	-	A	40025782	G	A	40025782	3	1	57	1	0	0	0	0	1	0	0	0	143	1000	35	4	325	4	ACLY	17	40025782	Missense_Mutation	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09	2199788	40025782	41169428	18	2865										
AZI1	0	genome.wustl.edu	37	chr17	79173241	79173241	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	tggtgtgggggacagctcctGagcaggctgccgcattcctg	16	11	0	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	79173241	79173241	G	A	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	nonsense	c.1132	p.Q378*	0.007	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	43	0	0	36	35	49.3	-	-	-	A	79173241	G	A	79173241	4	1	57	1	0	0	0	0	0	1	0	0	1244	1299	45	2	2178	2	AZI1	17	79173241	Nonsense_Mutation	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09	39147459	79173241	2021969	19	2866										
SLC38A10	0	genome.wustl.edu	37	chr17	79258654	79258665	+	In_Frame_Del	DEL	TCTCCACCAGCA	TCTCCACCAGCA	-													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	gcagggcggggcttacctggTctccaccagcatcttgcctg							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	TCTCCACCAGCA	TCTCCACCAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	79258654	79258665	TCTCCACCAGCA	-	DEL	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	in_frame_del	c.259_248	p.MLVE83in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	24	0	0	25	7	21.21	-	-	-	-	79258665	TCTCCACCAGCA	-	79258654	7	5	57	1	0	1	0	1	0	0	0	0	14691	1667	58	0	3434	0	SLC38A10	17	79258654	In_Frame_Del	DEL	TCTCCACCAGCA	TCGA-A2-A0SU-01A-11D-A099-09	85413	79258654	1936556	20	2867										
ACTG1	0	genome.wustl.edu	37	chr17	79477829	79477830	+	Frame_Shift_Del	DEL	CC	CC	-													0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	gatggagccaccgatccacaCcgagtacttgcgctctgggg							TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	17	79477829	79477830	CC	-	DEL	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	frame_shift_del	c.1015_1014	p.W340fs	0.997:0.001	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	65	0	0	57	10	14.93	-	-	-	-	79477830	CC	-	79477829	7	5	57	1	0	1	0	1	0	0	0	0	196	507	18	0	116	0	ACTG1	17	79477829	Frame_Shift_Del	DEL	CC	TCGA-A2-A0SU-01A-11D-A099-09	219175	79477829	1717381	21	2868										
MOCOS	0	genome.wustl.edu	37	chr18	33793393	33793393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ctgcttctgtaacactggggCctgccagaggcacctgggca	13	13	1	1			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	18	33793393	33793393	C	T	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	missense	c.1283	p.A428V	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	62	0	0	71	22	23.16	-	-	-	T	33793393	C	T	33793393	3	4	57	1	0	0	0	0	1	0	0	0	9761	739	26	4	1309	4	MOCOS	18	33793393	Missense_Mutation	SNP	C	TCGA-A2-A0SU-01A-11D-A099-09		33793393	44283855	22	2869										
NCAN	0	genome.wustl.edu	37	chr19	19338574	19338574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.798105743820957	1.37030411449016	4.45348837209302	0.809725158562368	1	1	0	ggggagaccagccctgctcaGgtcaacaaagctgagcactc	12	13	2	2			TCGA-A2-A0SU-01A-11D-A099-09	TCGA-A2-A0SU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceaf20f-1458-4f7f-954a-e2f58ed163bf	e1e61ba9-925d-4bff-8943-0153ee1b9343	19	19338574	19338574	G	A	SNP	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	silent	c.2145	p.Q715	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	57	0	0	35	5	12.5	-	-	-	A	19338574	G	A	19338574	2	1	57	1	0	0	0	0	0	0	0	1	10276	991	35	4		4	NCAN	19	19338574	Silent	SNP	G	TCGA-A2-A0SU-01A-11D-A099-09		19338574	39790409	23	2870										
BRDT	0	genome.wustl.edu	37	chr1	92445220	92445220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agatatcacagaaaccactgGtagagagaacactaatgaag	9	7	1	5			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	1	92445220	92445220	G	A	SNP	BRDT	ENST00000362005	human	ensembl	69_37n	1	known	missense	c.1193	p.G398D	0.126	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	99	0	0	85	22	20.56	-	-	-	A	92445220	G	A	92445220	3	1	58	1	0	0	0	0	1	0	0	0	1516	1261	44	4	1219	4	BRDT	1	92445220	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		92445220	156805401	1	2871										
EPHB3	0	genome.wustl.edu	37	chr3	184299398	184299398	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagatgaaccagacgctgccTgtgcaggtctgacaccggct	12	13	1	4			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	3	184299398	184299398	T	C	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	silent	c.2985	p.P995	0.091	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_SAM/pointed	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	8	0	0	38	11	22.45	-	-	-	C	184299398	T	C	184299398	2	2	58	1	0	0	0	0	0	0	0	1	5213	1567	55	5		5	EPHB3	3	184299398	Silent	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09		184299398	13723032	2	2872										
SORBS2	0	genome.wustl.edu	37	chr4	186544158	186544158	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actgcggggcattctcccgcAgtcattctggtagggtggac	14	11	3	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	4	186544158	186544158	A	T	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.2413	p.C805S	0.444	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	35	0	0	32	24	42.86	-	-	-	T	186544158	A	T	186544158	3	4	58	1	0	0	0	0	1	0	0	0	15017	188	7	5	925	5	SORBS2	4	186544158	Missense_Mutation	SNP	A	TCGA-A2-A0SV-01A-11D-A099-09		186544158	4610118	3	2873										
FBN2	0	genome.wustl.edu	37	chr5	127855061	127855061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gacatccattttcacagacaGctgcatacaaaaatagcaag	6	10	1	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	5	127855061	127855061	G	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.533	p.P178H	1.000	pirsf_Fibrillin,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	76	0	0	53	12	18.46	-	-	-	T	127855061	G	T	127855061	3	4	58	1	0	0	0	0	1	0	0	0	5749	985	34	4	8449	4	FBN2	5	127855061	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		127855061	53060199	4	2874										
PCDHGB2	0	genome.wustl.edu	37	chr5	140740551	140740551	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atcacctactcctttcataaTgtggacgaacaagtgaaaca	6	10	2	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	5	140740551	140740551	T	C	SNP	PCDHGB2	ENST00000522605	human	ensembl	69_37n	1	known	silent	c.849	p.N283	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910	30	0	0	38	22	36.67	-	-	-	C	140740551	T	C	140740551	2	2	58	1	0	0	0	0	0	0	0	1	11636	1461	51	5		5	PCDHGB2	5	140740551	Silent	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09	12885490	140740551	40174709	5	2875										
FAT2	0	genome.wustl.edu	37	chr5	150925419	150925419	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaaagttgactttaagaacaTaggagcattgtcattttcat	7	5	2	2			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	5	150925419	150925419	T	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.5269	p.M1757V	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	162	0	0	43	109	71.71	-	-	-	C	150925419	T	C	150925419	3	2	58	1	0	0	0	0	1	0	0	0	5736	1406	49	5	7840	5	FAT2	5	150925419	Missense_Mutation	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09	10184868	150925419	29989841	6	2876										
PHACTR1	0	genome.wustl.edu	37	chr6	13230284	13230286	+	In_Frame_Del	DEL	AGG	AGG	-													0	0	1	0	NA	0	1	1	0	tacaggctccctggccatgaAggtctgcaggaaggactcct							TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	6	13230284	13230286	AGG	-	DEL	PHACTR1	ENST00000432934	human	ensembl	69_37n	1	known	in_frame_del	c.1457_1459	p.KV486in_frame_delI	1.000:1.000:1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	45	0	0	49	20	28.57	-	-	-	-	13230286	AGG	-	13230284	7	5	58	1	0	1	0	1	0	0	0	0	11883	72	3	0	1280	0	PHACTR1	6	13230284	In_Frame_Del	DEL	AGG	TCGA-A2-A0SV-01A-11D-A099-09		13230284	157884783	7	2877										
BTN2A1	0	genome.wustl.edu	37	chr6	26459794	26459795	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	NA	0	1	1	0	gctgccatctgtcacccgagINSaaaaatgctgaggacatgga							TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	6	26459794	26459795	-	A	INS	BTN2A1	ENST00000312541	human	ensembl	69_37n	1	known	frame_shift_ins	c.168_169	p.N57fs	0.877:0.868	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A1	HGNC	ENSG00000112763	272	0	0	197	93	32.07	-	-	-	A	26459795	-	A	26459794	7	5	58	1	0	1	1	0	0	0	0	0	1569	933	33	0	174	0	BTN2A1	6	26459794	Frame_Shift_Ins	INS	-	TCGA-A2-A0SV-01A-11D-A099-09	13229510	26459794	144655273	8	2878										
HDAC9	0	genome.wustl.edu	37	chr7	18801793	18801793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cttgcagcgaattcaaggtcGaaaagccagcctggaggaaa	12	9	1	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	18801793	18801793	G	T	SNP	HDAC9	ENST00000441542	human	ensembl	69_37n	1	known	missense	c.2057	p.R686L	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	87	0	0	39	76	64.41	-	-	-	T	18801793	G	T	18801793	3	4	58	1	0	0	0	0	1	0	0	0	7065	1058	37	3	2162	3	HDAC9	7	18801793	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		18801793	140336870	9	2879										
CFTR	0	genome.wustl.edu	37	chr7	117305522	117305530	+	In_Frame_Del	DEL	AATAATTAG	AATAATTAG	-													0	0	1	0	NA	0	1	1	0	ttcttttctagaacataccaAataattagaagaactctaaa							TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	AATAATTAG	AATAATTAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	117305522	117305530	AATAATTAG	-	DEL	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	in_frame_del	c.4146_4154	p.IIR1383in_frame_del	0.997:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	143	0	0	63	13	17.11	-	-	-	-	117305530	AATAATTAG	-	117305522	7	5	58	1	0	1	0	1	0	0	0	0	3323	11	1	0	4248	0	CFTR	7	117305522	In_Frame_Del	DEL	AATAATTAG	TCGA-A2-A0SV-01A-11D-A099-09	98503729	117305522	41833141	10	2880										
MLL3	0	genome.wustl.edu	37	chr7	151896496	151896496	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgacagattatctaaacttaTcttgctttgtctacttgtat	5	7	3	2			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	151896496	151896496	T	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.4141	p.I1381V	0.927	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	130	0	0	33	77	70	-	-	-	C	151896496	T	C	151896496	3	2	58	1	0	0	0	0	1	0	0	0	9693	1435	50	5	10726	5	MLL3	7	151896496	Missense_Mutation	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09	34590974	151896496	7242167	11	2881										
CSMD1	0	genome.wustl.edu	37	chr8	3216673	3216673	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgaaagcgtgtgaccacctaCccacacaccttggcagaggt	10	13	0	3			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	8	3216673	3216673	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	splice_site	c.3307+1	e22+1	1.000	-	-	-	no_errors	CSMD1	HGNC	ENSG00000183117	55	0	0	24	10	29.41	-	-	-	T	3216673	C	T	3216673	5	4	58	1	0	0	0	0	0	0	1	0	3976	521	18	4	7589	4	CSMD1	8	3216673	Splice_Site	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09		3216673	143147349	12	2882										
DMRTA1	0	genome.wustl.edu	37	chr9	22451646	22451646	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctcttcaaactacttctgcTtcttatggaggtgattcaag	7	10	5	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	22451646	22451646	T	A	SNP	DMRTA1	ENST00000325870	human	ensembl	69_37n	1	known	silent	c.1251	p.A417	0.683	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTA1	HGNC	ENSG00000176399	39	0	0	61	44	41.51	-	-	-	A	22451646	T	A	22451646	2	1	58	1	0	0	0	0	0	0	0	1	4624	1596	56	5		5	DMRTA1	9	22451646	Silent	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09		22451646	118761785	13	2883										
MORN5	0	genome.wustl.edu	37	chr9	124936830	124936830	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaaatccccaagggctattaCgattgtggagacggcttcta	10	9	1	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	124936830	124936830	C	T	SNP	MORN5	ENST00000536616	human	ensembl	69_37n	1	known	silent	c.363	p.Y121	0.977	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN5	HGNC	ENSG00000185681	137	0	0	107	55	33.95	-	-	-	T	124936830	C	T	124936830	2	4	58	1	0	0	0	0	0	0	0	1	9783	547	19	1		1	MORN5	9	124936830	Silent	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09	102485184	124936830	16276601	14	2884										
ITGA8	0	genome.wustl.edu	37	chr10	15628600	15628600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taccctcttatttccacctgCgctacagcagtgatgttgat	7	12	1	2			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	15628600	15628600	C	T	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	silent	c.2355	p.A785	0.924	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	194	0	0	143	60	29.56	-	-	-	T	15628600	C	T	15628600	2	4	58	1	0	0	0	0	0	0	0	1	7936	755	27	1		1	ITGA8	10	15628600	Silent	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09		15628600	119906147	15	2885										
OGDHL	0	genome.wustl.edu	37	chr10	50966465	50966465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctctgggggttttccaaccaGgcgaagtacatctcctccat	9	13	2	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	50966465	50966465	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	silent	c.174	p.A58	0.996	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	8	0	0	9	4	30.77	-	-	-	A	50966465	G	A	50966465	2	1	58	1	0	0	0	0	0	0	0	1	10913	987	35	4		4	OGDHL	10	50966465	Silent	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09	35337865	50966465	84568282	16	2886										
PTEN	0	genome.wustl.edu	37	chr10	89685293	89685298	+	In_Frame_Del	DEL	ACCATT	ACCATT	-													0	0	1	0	NA	0	1	1	0	tttggattcaaagcataaaaAccattacaagatatacaatc							TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	ACCATT	ACCATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	89685293	89685298	ACCATT	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	in_frame_del	c.188_193	p.HY64in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	104	0	0	41	21	33.87	-	-	-	-	89685298	ACCATT	-	89685293	7	5	58	1	0	1	0	1	0	0	0	0	12818	43	2	0	198	0	PTEN	10	89685293	In_Frame_Del	DEL	ACCATT	TCGA-A2-A0SV-01A-11D-A099-09	38718828	89685293	45849454	17	2887										
OR51A2	0	genome.wustl.edu	37	chr11	4976683	4976683	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gtttcaggggcattgaacagGaagatgcttaacacagtggg	14	6	1	2			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	4976683	4976683	G	A	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	silent	c.261	p.F87	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	110	0	0	34	50	59.52	-	-	-	A	4976683	G	A	4976683	2	1	58	1	0	0	0	0	0	0	0	1	11159	1165	41	2		2	OR51A2	11	4976683	Silent	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		4976683	130029833	18	2888										
OR52E4	0	genome.wustl.edu	37	chr11	5905807	5905807	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttcaacctccaagagatcagCtttgggggatgccttcttca	9	11	4	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	5905807	5905807	C	T	SNP	OR52E4	ENST00000316987	human	ensembl	69_37n	1	known	silent	c.285	p.S95	0.006	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52E4	HGNC	ENSG00000180974	91	0	0	82	29	25.89	-	-	-	T	5905807	C	T	5905807	2	4	58	1	0	0	0	0	0	0	0	1	11189	796	28	4		4	OR52E4	11	5905807	Silent	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09	929124	5905807	129100709	19	2889										
FAT3	0	genome.wustl.edu	37	chr11	92543074	92543074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgtacagcctgatggccaagGccactgacgggggtggcagg	17	10	0	2			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	92543074	92543074	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.9313	p.A3105T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	75	0	0	55	24	30.38	-	-	-	A	92543074	G	A	92543074	3	1	58	1	0	0	0	0	1	0	0	0	5737	1203	42	4	9359	4	FAT3	11	92543074	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09	86637267	92543074	42463442	20	2890										
DYNC2H1	0	genome.wustl.edu	37	chr11	103055626	103055626	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacggattttaatcaacagaAtgactatgtggtagaaacaa	8	6	1	3			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	103055626	103055626	A	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.6479	p.N2160S	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	247	0	0	169	84	33.2	-	-	-	G	103055626	A	G	103055626	3	3	58	1	0	0	0	0	1	0	0	0	4881	115	4	5	6641	5	DYNC2H1	11	103055626	Missense_Mutation	SNP	A	TCGA-A2-A0SV-01A-11D-A099-09	10512552	103055626	31950890	21	2891										
PPM1H	0	genome.wustl.edu	37	chr12	63042385	63042385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cttcagcacaccccgggcacGcatcaccaggtcctgagctg	10	17	2	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	63042385	63042385	G	A	SNP	PPM1H	ENST00000228705	human	ensembl	69_37n	-1	known	missense	c.1429	p.R477C	1.000	superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1H	HGNC	ENSG00000111110	105	0	0	81	44	34.92	-	-	-	A	63042385	G	A	63042385	3	1	58	1	0	0	0	0	1	0	0	0	12418	1087	38	1	119	1	PPM1H	12	63042385	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		63042385	70809510	22	2892										
DYRK2	0	genome.wustl.edu	37	chr12	68051820	68051820	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagttgttacgagcatcagcGtgtctacacgtacatccagt	9	11	2	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	68051820	68051820	G	T	SNP	DYRK2	ENST00000344096	human	ensembl	69_37n	1	known	missense	c.1133	p.R378L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334	197	0	0	93	38	29.01	-	-	-	T	68051820	G	T	68051820	3	4	58	1	0	0	0	0	1	0	0	0	4891	1145	40	3	1143	3	DYRK2	12	68051820	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09	5009435	68051820	65800075	23	2893										
CIT	0	genome.wustl.edu	37	chr12	120146063	120146063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cgggctgggcaggcaggtggGactgggccagggactgtttc	20	9	0	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	120146063	120146063	G	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.5006	p.S1669F	1.000	pfam_Citron,smart_Citron,pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	112	0	0	64	55	46.22	-	-	-	A	120146063	G	A	120146063	3	1	58	1	0	0	0	0	1	0	0	0	3468	1174	41	2	1113	2	CIT	12	120146063	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09	52094243	120146063	13705832	24	2894										
VKORC1	0	genome.wustl.edu	37	chr16	31104727	31104727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	agcacatgctccaccagcccGaaacccctgccccacctggc	7	21	0	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	16	31104727	31104727	G	A	SNP	VKORC1	ENST00000498155	human	ensembl	69_37n	-1	putative	missense	c.286	p.R96W	0.840	NULL	NULL	-	no_errors	VKORC1	HGNC	ENSG00000167397	66	0	0	32	21	39.62	-	-	-	A	31104727	G	A	31104727	3	1	58	1	0	0	0	0	1	0	0	0	17269	1049	37	1	310	1	VKORC1	16	31104727	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		31104727	59250026	25	2895										
TP53	0	genome.wustl.edu	37	chr17	7579343	7579351	+	In_Frame_Del	DEL	TGCAAGAAG	TGCAAGAAG	-													0	0	1	0	NA	0	1	1	0	cagacttggctgtcccagaaTgcaagaagcccagacggaaa							TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	TGCAAGAAG	TGCAAGAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	7579343	7579351	TGCAAGAAG	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.344_336	p.FLH113in_frame_del	0.930:0.938:0.948:0.998:1.000:1.000:1.000:0.999:0.805	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	99	0	0	7	6	46.15	-	-	-	-	7579351	TGCAAGAAG	-	7579343	7	5	58	1	0	1	0	1	0	0	0	0	16477	1464	51	0	958	0	TP53	17	7579343	In_Frame_Del	DEL	TGCAAGAAG	TCGA-A2-A0SV-01A-11D-A099-09		7579343	73615867	26	2896										
SLC6A4	0	genome.wustl.edu	37	chr17	28545941	28545941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	catgatggtgtaggggaggaGgaatgcccctgaggcagatg	18	6	0	3			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	28545941	28545941	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	69_37n	-1	known	missense	c.352	p.L118F	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	69	0	0	71	35	33.02	-	-	-	A	28545941	G	A	28545941	3	1	58	1	0	0	0	0	1	0	0	0	14775	1000	35	4	1588	4	SLC6A4	17	28545941	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09	20966598	28545941	52649269	27	2897										
ACLY	0	genome.wustl.edu	37	chr17	40030163	40030163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cgtagatgagctcctgtcctCgctcatcgcagatgctggtc	11	13	1	3			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	40030163	40030163	C	T	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.2543	p.R848Q	1.000	superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	29	0	0	45	26	36.62	-	-	-	T	40030163	C	T	40030163	3	4	58	1	0	0	0	0	1	0	0	0	143	884	31	1	790	1	ACLY	17	40030163	Missense_Mutation	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09	11484222	40030163	41165047	28	2898										
AOC3	0	genome.wustl.edu	37	chr17	41008381	41008381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actgtggggaacggcgtgggCttcttcctccgaccctataa	12	12	1	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	41008381	41008381	C	T	SNP	AOC3	ENST00000308423	human	ensembl	69_37n	1	known	silent	c.2106	p.G702	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471	88	0	0	45	29	39.19	-	-	-	T	41008381	C	T	41008381	2	4	58	1	0	0	0	0	0	0	0	1	729	784	28	4		4	AOC3	17	41008381	Silent	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09	978218	41008381	40186829	29	2899										
ITGA2B	0	genome.wustl.edu	37	chr17	42454377	42454377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacgctcgccaggtcagtacCtccgtatctgcagctggaag	11	14	2	0			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	42454377	42454377	C	T	SNP	ITGA2B	ENST00000262407	human	ensembl	69_37n	-1	known	missense	c.2267	p.S756N	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	26	0	0	48	22	31.43	-	-	-	T	42454377	C	T	42454377	3	4	58	1	0	0	0	0	1	0	0	0	7930	695	24	4	888	4	ITGA2B	17	42454377	Missense_Mutation	SNP	C	TCGA-A2-A0SV-01A-11D-A099-09	1445996	42454377	38740833	30	2900										
CEP76	0	genome.wustl.edu	37	chr18	12697393	12697393	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cattgttgttgaatcagccaTtctagttccatcacctagca	6	11	3	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	18	12697393	12697393	T	C	SNP	CEP76	ENST00000262127	human	ensembl	69_37n	-1	known	missense	c.535	p.M179V	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP76	HGNC	ENSG00000101624	129	0	0	91	38	29.46	-	-	-	C	12697393	T	C	12697393	3	2	58	1	0	0	0	0	1	0	0	0	3290	1493	52	5	1476	5	CEP76	18	12697393	Missense_Mutation	SNP	T	TCGA-A2-A0SV-01A-11D-A099-09		12697393	65379855	31	2901										
C19orf44	0	genome.wustl.edu	37	chr19	16611796	16611796	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgagaaacacttactcctgAaagagaaccctgtgctcggg	10	10	0	3			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	19	16611796	16611796	A	C	SNP	C19orf44	ENST00000221671	human	ensembl	69_37n	1	known	missense	c.193	p.K65Q	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072	51	0	0	49	17	25.76	-	-	-	C	16611796	A	C	16611796	3	2	58	1	0	0	0	0	1	0	0	0	1945	247	9	5	195	5	C19orf44	19	16611796	Missense_Mutation	SNP	A	TCGA-A2-A0SV-01A-11D-A099-09		16611796	42517187	32	2902										
ATP9A	0	genome.wustl.edu	37	chr20	50235558	50235558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcggaaggcgttcagctcgaGgtgagcctccccgcggttgg	17	12	1	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	20	50235558	50235558	G	A	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.2140	p.L714F	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	31	0	0	17	39	69.64	-	-	-	A	50235558	G	A	50235558	3	1	58	1	0	0	0	0	1	0	0	0	1202	1000	35	4	1039	4	ATP9A	20	50235558	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		50235558	12789962	33	2903										
MOV10L1	0	genome.wustl.edu	37	chr22	50553671	50553671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcattgtggtcatctgtgacGgaaagtaagggcctggaggt	15	6	3	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	22	50553671	50553671	G	A	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.1255	p.G419R	0.948	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	44	0	0	33	13	28.26	-	-	-	A	50553671	G	A	50553671	3	1	58	1	0	0	0	0	1	0	0	0	9791	1117	39	1	1326	1	MOV10L1	22	50553671	Missense_Mutation	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		50553671	750895	34	2904										
EFNB1	0	genome.wustl.edu	37	chrX	68060260	68060260	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctactgaagctacgcaagcgGcaccgcaagcacacacagca	9	15	0	1			TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	X	68060260	68060260	G	A	SNP	EFNB1	ENST00000204961	human	ensembl	69_37n	1	known	silent	c.804	p.R268	0.982	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB1	HGNC	ENSG00000090776	45	0	0	60	20	25	-	-	-	A	68060260	G	A	68060260	2	1	58	1	0	0	0	0	0	0	0	1	4990	1190	42	4		4	EFNB1	23	68060260	Silent	SNP	G	TCGA-A2-A0SV-01A-11D-A099-09		68060260	87210300	35	2905										
LRRC8B	0	genome.wustl.edu	37	chr1	90049138	90049138	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gtgtgtctattccttggcagAaatctttaaggtcctggctt	10	8	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	1	90049138	90049138	A	C	SNP	LRRC8B	ENST00000330947	human	ensembl	69_37n	1	known	missense	c.929	p.E310A	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147	269	1	0.37	183	59	24.38	-	-	-	C	90049138	A	C	90049138	3	2	59	1	0	0	0	0	1	0	0	0	9088	246	9	5	931	5	LRRC8B	1	90049138	Missense_Mutation	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09		90049138	159201483	1	2906										
TCHH	0	genome.wustl.edu	37	chr1	152085491	152085491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gaattcgttgaaatcgacacGcccattactgtcaagatcca	7	11	1	2			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	1	152085491	152085491	G	A	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.202	p.R68C	0.001	pfscan_EF_HAND_2	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	32	0	0	39	47	54.65	-	-	-	A	152085491	G	A	152085491	3	1	59	1	0	0	0	0	1	0	0	0	15795	1087	38	1	5633	1	TCHH	1	152085491	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	62036353	152085491	97165130	2	2907										
RNF2	0	genome.wustl.edu	37	chr1	185060756	185060756	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ttgtggtttcacctcgaagtCtacacagtgaattaatgtgc	9	8	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	1	185060756	185060756	C	T	SNP	RNF2	ENST00000367510	human	ensembl	69_37n	1	known	silent	c.133	p.L45	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481	358	1	0.28	91	121	57.08	-	-	-	T	185060756	C	T	185060756	2	4	59	1	0	0	0	0	0	0	0	1	13558	912	32	2		2	RNF2	1	185060756	Silent	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	32975265	185060756	64189865	3	2908										
MERTK	0	genome.wustl.edu	37	chr2	112767613	112767631	+	Frame_Shift_Del	DEL	ACTTTATTCCCGATTGGAG	ACTTTATTCCCGATTGGAG	-													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggggacctgcatacttacttActttattcccgattggagac							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	ACTTTATTCCCGATTGGAG	ACTTTATTCCCGATTGGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	2	112767613	112767631	ACTTTATTCCCGATTGGAG	-	DEL	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	frame_shift_del	c.2049_2067	p.L684fs	0.834:0.999:0.998:0.374:0.462:0.536:0.532:1.000:1.000:0.997:1.000:1.000:0.017:0.164:0.990:0.996:0.998:0.970:0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	301	0	0	222	26	10.48	-	-	-	-	112767631	ACTTTATTCCCGATTGGAG	-	112767613	7	5	59	1	0	1	0	1	0	0	0	0	9550	388	14	0	2107	0	MERTK	2	112767613	Frame_Shift_Del	DEL	ACTTTATTCCCGATTGGAG	TCGA-A2-A0SW-01A-11D-A099-09		112767613	130431760	4	2909										
ZC3H6	0	genome.wustl.edu	37	chr2	113088668	113088669	+	Frame_Shift_Ins	INS	-	-	A													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	aacattacagaaacaaacagINSaaactttaaggaatcagcaa							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	2	113088668	113088669	-	A	INS	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	frame_shift_ins	c.2173_2174	p.T726fs	1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	86	0	0	77	25	24.51	-	-	-	A	113088669	-	A	113088668	7	5	59	1	0	1	1	0	0	0	0	0	17667	943	33	0	2219	0	ZC3H6	2	113088668	Frame_Shift_Ins	INS	-	TCGA-A2-A0SW-01A-11D-A099-09	321055	113088668	130110705	5	2910										
NCKAP5	0	genome.wustl.edu	37	chr2	133887613	133887613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gttcagactctagggtcaccTcctgcaaccgcttctcgctt	8	15	4	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	2	133887613	133887613	T	C	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.278	p.E93G	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	173	1	0.57	46	17	26.98	-	-	-	C	133887613	T	C	133887613	3	2	59	1	0	0	0	0	1	0	0	0	10295	1551	54	5	5511	5	NCKAP5	2	133887613	Missense_Mutation	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09	20798945	133887613	109311760	6	2911										
TTN	0	genome.wustl.edu	37	chr2	179614907	179614907	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	atttgtttggccctcttgacTcatagatggatgggcgcctt	11	9	2	2			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	2	179614907	179614907	T	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.12220	p.S4074G	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	233	0	0	129	35	21.34	-	-	-	C	179614907	T	C	179614907	3	2	59	1	0	0	0	0	1	0	0	0	16832	1551	54	5	98077	5	TTN	2	179614907	Missense_Mutation	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09	45727294	179614907	63584466	7	2912										
MYEOV2	0	genome.wustl.edu	37	chr2	241066091	241066092	+	Frame_Shift_Ins	INS	-	-	A													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tccagtgagtagaaactgatINSattgtgctgtcttcgctgac							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	2	241066091	241066092	-	A	INS	MYEOV2	ENST00000307266	human	ensembl	69_37n	-1	known	frame_shift_ins	c.648_647	p.S217fs	0.000:0.000	NULL	NULL	-	no_errors	MYEOV2	HGNC	ENSG00000172428	127	0	0	166	57	25.56	-	-	-	A	241066092	-	A	241066091	7	5	59	1	0	1	1	0	0	0	0	0	10098	1396	49	0	114	0	MYEOV2	2	241066091	Frame_Shift_Ins	INS	-	TCGA-A2-A0SW-01A-11D-A099-09	61451184	241066091	2133282	8	2913										
MUC4	0	genome.wustl.edu	37	chr3	195508194	195508194	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggaagaggggtggcgtgaccTgtggatgctgaggaagggct	21	5	0	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	3	195508194	195508194	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.10257	p.T3419	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	8	0	0	91	39	30	-	-	-	G	195508194	T	G	195508194	2	3	59	1	0	0	0	0	0	0	0	1	10050	1567	55	5		5	MUC4	3	195508194	Silent	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09		195508194	2514236	9	2914										
HTRA3	0	genome.wustl.edu	37	chr4	8294069	8294069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	acgggaactccgggggaccaCtggtgaacctggtaagtgtc	15	10	0	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	4	8294069	8294069	C	T	SNP	HTRA3	ENST00000307358	human	ensembl	69_37n	1	known	silent	c.925	p.L309	0.994	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_Kazal-type_dom,pfam_PDZ,pfam_Prot_inh_Kazal,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,prints_Peptidase_S1C,pfscan_PDZ	-	no_errors	HTRA3	HGNC	ENSG00000170801	13	0	0	57	17	22.97	-	-	-	T	8294069	C	T	8294069	2	4	59	1	0	0	0	0	0	0	0	1	7509	564	20	4		4	HTRA3	4	8294069	Silent	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		8294069	182860207	10	2915										
GPRIN3	0	genome.wustl.edu	37	chr4	90169167	90169167	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cagggactctgcgtccaaggAtgcaccatacacttcccagg	10	14	1	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	4	90169167	90169167	A	T	SNP	GPRIN3	ENST00000333209	human	ensembl	69_37n	-1	known	missense	c.2095	p.S699T	0.998	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	55	0	0	29	16	35.56	-	-	-	T	90169167	A	T	90169167	3	4	59	1	0	0	0	0	1	0	0	0	6782	333	12	5	239	5	GPRIN3	4	90169167	Missense_Mutation	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09	81875098	90169167	100985109	11	2916										
LRBA	0	genome.wustl.edu	37	chr4	151829547	151829547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	atccaactgtgcaaaaagtgGaaatagtacttgtactcctc	7	9	0	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	4	151829547	151829547	G	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.1432	p.P478A	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	427	2	0.47	155	64	29.22	-	-	-	C	151829547	G	C	151829547	3	2	59	1	0	0	0	0	1	0	0	0	8997	1174	41	2	7351	2	LRBA	4	151829547	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	61660380	151829547	39324729	12	2917										
FGA	0	genome.wustl.edu	37	chr4	155506918	155506918	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	actggattcctttgtatttgTgaagatgccagattctgagc	10	7	1	4			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	4	155506918	155506918	T	C	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.1663	p.T555A	0.000	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	89	0	0	62	20	24.39	-	-	-	C	155506918	T	C	155506918	3	2	59	1	0	0	0	0	1	0	0	0	5876	1696	59	5	989	5	FGA	4	155506918	Missense_Mutation	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09	3677371	155506918	35647358	13	2918										
CDH6	0	genome.wustl.edu	37	chr5	31317975	31317975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggaggcgctcatccaccccaCgggactgagcacgggggctc	15	15	1	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	5	31317975	31317975	C	T	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	missense	c.1826	p.T609M	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	35	0	0	19	5	20.83	-	-	-	T	31317975	C	T	31317975	3	4	59	1	0	0	0	0	1	0	0	0	3143	536	19	1	1864	1	CDH6	5	31317975	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		31317975	149597285	14	2919										
PIK3R1	0	genome.wustl.edu	37	chr5	67589630	67589631	+	In_Frame_Ins	INS	-	-	GATTATATGAAG													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	aaaaagtcgagaatatgataINSgattatatgaagaatatacc							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	5	67589630	67589631	-	GATTATATGAAG	INS	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_ins	c.1393_1394	p.469in_frame_insGLYE	1.000:1.000	superfamily_Guanylate-bd_C	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	60	0	0	124	28	18.42	-	-	-	GATTATATGAAG	67589631	-	GATTATATGAAG	67589630	7	5	59	1	0	1	1	0	0	0	0	0	11992	412	15	0	1561	0	PIK3R1	5	67589630	In_Frame_Ins	INS	-	TCGA-A2-A0SW-01A-11D-A099-09	36271655	67589630	113325630	15	2920										
STARD4	0	genome.wustl.edu	37	chr5	110835655	110835655	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggctgtatctaccgcagactGaggaatcatcccacgcagat	10	12	2	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	5	110835655	110835655	G	C	SNP	STARD4	ENST00000296632	human	ensembl	69_37n	-1	known	missense	c.547	p.Q183E	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD4	HGNC	ENSG00000164211	179	0	0	126	36	22.22	-	-	-	C	110835655	G	C	110835655	3	2	59	1	0	0	0	0	1	0	0	0	15350	1299	45	2	74	2	STARD4	5	110835655	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	43246025	110835655	70079605	16	2921										
GNB2L1	0	genome.wustl.edu	37	chr5	180669195	180669195	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ttgtgagatcccagaggcgcAgggttccatcccaggagcct	13	12	0	2			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	5	180669195	180669195	A	C	SNP	GNB2L1	ENST00000512805	human	ensembl	69_37n	-1	known	missense	c.260	p.L87R	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB2L1	HGNC	ENSG00000204628	25	0	0	19	6	24	-	-	-	C	180669195	A	C	180669195	3	2	59	1	0	0	0	0	1	0	0	0	6570	188	7	5	721	5	GNB2L1	5	180669195	Missense_Mutation	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09	69833540	180669195	246065	17	2922										
SLC29A4	0	genome.wustl.edu	37	chr7	5339011	5339011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gcatcctgggcgagtggctgCccatcctcatcatggctgtg	13	13	2	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	5339011	5339011	C	T	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	1	known	missense	c.1162	p.P388S	1.000	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	14	0	0	20	5	20	-	-	-	T	5339011	C	T	5339011	3	4	59	1	0	0	0	0	1	0	0	0	14626	739	26	4	1192	4	SLC29A4	7	5339011	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		5339011	153799652	18	2923										
ZNF107	0	genome.wustl.edu	37	chr7	64168226	64168226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ctatcaacttactagacataAgatagttcatactaaagaga	5	7	2	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	64168226	64168226	A	G	SNP	ZNF107	ENST00000344930	human	ensembl	69_37n	1	known	missense	c.1544	p.K515R	0.018	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247	53	0	0	82	20	19.61	-	-	-	G	64168226	A	G	64168226	3	3	59	1	0	0	0	0	1	0	0	0	17811	72	3	5	1550	5	ZNF107	7	64168226	Missense_Mutation	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09	58829215	64168226	94970437	19	2924										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74538956	74538956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggtaaagccttagggacaacAgtgatggtgcctgttcccta	12	9	0	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	74538956	74538956	A	G	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	silent	c.378	p.T126	0.000	pfam_GTF2I,superfamily_GTF2I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	44	0	0	13	7	35	-	-	-	G	74538956	A	G	74538956	2	3	59	1	0	0	0	0	0	0	0	1	6921	175	7	5		5	GTF2IRD2B	7	74538956	Silent	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09	10370730	74538956	84599707	20	2925										
ABCB1	0	genome.wustl.edu	37	chr7	87175254	87175254	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tttcctttctccacaatgacTccatcatcgaaaccagcgat	4	14	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	87175254	87175254	T	C	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.1812	p.G604	0.990	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	145	1	0.68	93	17	15.45	-	-	-	C	87175254	T	C	87175254	2	2	59	1	0	0	0	0	0	0	0	1	40	1538	54	5		5	ABCB1	7	87175254	Silent	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09	12636298	87175254	71963409	21	2926										
CPA5	0	genome.wustl.edu	37	chr7	130007391	130007391	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tacggccgattgctggagccCgtttcaaatcagagggagtt	13	9	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	130007391	130007391	C	T	SNP	CPA5	ENST00000355388	human	ensembl	69_37n	1	known	silent	c.1017	p.P339	0.361	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA5	HGNC	ENSG00000158525	93	0	0	71	12	14.46	-	-	-	T	130007391	C	T	130007391	2	4	59	1	0	0	0	0	0	0	0	1	3823	639	23	1		1	CPA5	7	130007391	Silent	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	42832137	130007391	29131272	22	2927										
PLXNA4	0	genome.wustl.edu	37	chr7	131895703	131895703	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gcagggttgggcgactcacaGaggtgttctggcactgtacg	16	9	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	7	131895703	131895703	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.2297	p.S766F	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	31	0	0	16	4	20	-	-	-	A	131895703	G	A	131895703	3	1	59	1	0	0	0	0	1	0	0	0	12196	956	33	2	3479	2	PLXNA4	7	131895703	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	1888312	131895703	27242960	23	2928										
EFHA2	0	genome.wustl.edu	37	chr8	16942807	16942807	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ctgatggcaatgagatggtgGataaaaaagagtttttggtg	14	2	0	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	8	16942807	16942807	G	A	SNP	EFHA2	ENST00000519044	human	ensembl	69_37n	1	novel	nonsense	c.330	p.W110*	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EFHA2	HGNC	ENSG00000155970	304	0	0	280	72	20.45	-	-	-	A	16942807	G	A	16942807	4	1	59	1	0	0	0	0	0	1	0	0	4979	1174	41	2	779	2	EFHA2	8	16942807	Nonsense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09		16942807	129421215	24	2929										
DKK4	0	genome.wustl.edu	37	chr8	42232280	42232280	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ctgcgaatgctgttcttaccCttcctgccttgtgatttctt	7	12	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	8	42232280	42232280	C	T	SNP	DKK4	ENST00000220812	human	ensembl	69_37n	-1	known	silent	c.414	p.K138	0.960	NULL	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371	420	1	0.24	385	86	18.26	-	-	-	T	42232280	C	T	42232280	2	4	59	1	0	0	0	0	0	0	0	1	4583	695	24	4		4	DKK4	8	42232280	Silent	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	25289473	42232280	104131742	25	2930										
DDX50	0	genome.wustl.edu	37	chr10	70666581	70666581	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ccaaaaaatctaaaatgaaaGagaagctaaatggagacact	7	6	1	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	10	70666581	70666581	G	A	SNP	DDX50	ENST00000373585	human	ensembl	69_37n	1	known	missense	c.202	p.E68K	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	75	0	0	66	19	22.35	-	-	-	A	70666581	G	A	70666581	3	1	59	1	0	0	0	0	1	0	0	0	4399	943	33	2	208	2	DDX50	10	70666581	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09		70666581	64868166	26	2931										
PDE6C	0	genome.wustl.edu	37	chr10	95421855	95421855	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	atgaattttgggaacaaggaGatctggagagaacagtgttg	14	3	1	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	10	95421855	95421855	G	A	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.2248	p.D750N	1.000	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	203	0	0	131	39	22.94	-	-	-	A	95421855	G	A	95421855	3	1	59	1	0	0	0	0	1	0	0	0	11720	942	33	2	2322	2	PDE6C	10	95421855	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	24755274	95421855	40112892	27	2932										
C11orf9	0	genome.wustl.edu	37	chr11	61547364	61547364	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	atcagccagcgcttcctgcaGggaaccatcattgccctggt	10	14	2	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	11	61547364	61547364	G	A	SNP	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	silent	c.2298	p.Q766	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	60	0	0	46	11	19.3	-	-	-	A	61547364	G	A	61547364	2	1	59	1	0	0	0	0	0	0	0	1	1682	991	35	4		4	C11orf9	11	61547364	Silent	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09		61547364	73459152	28	2933										
METTL7B	0	genome.wustl.edu	37	chr12	56076035	56076035	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggtccggagagtactgagacCggtaagcagggtgggaaggg	20	6	0	2			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	12	56076035	56076035	C	A	SNP	METTL7B	ENST00000394252	human	ensembl	69_37n	1	known	missense	c.497	p.P166Q	1.000	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	METTL7B	HGNC	ENSG00000170439	50	0	0	11	7	38.89	-	-	-	A	56076035	C	A	56076035	3	1	59	1	0	0	0	0	1	0	0	0	9577	666	23	3	499	3	METTL7B	12	56076035	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		56076035	77775860	29	2934										
USP15	0	genome.wustl.edu	37	chr12	62786838	62786838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tctgtttattcttaggtattGtccgaattgtaaagaacatc	7	6	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	12	62786838	62786838	G	A	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.2426	p.C809Y	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	255	0	0	207	45	17.79	-	-	-	A	62786838	G	A	62786838	3	1	59	1	0	0	0	0	1	0	0	0	17143	1377	48	4	2409	4	USP15	12	62786838	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	6710803	62786838	71065057	30	2935										
XPOT	0	genome.wustl.edu	37	chr12	64808758	64808758	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tgtgcagaagctctagcccaGaggacatacaggtaattaaa	10	8	1	2			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	12	64808758	64808758	G	A	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	silent	c.132	p.Q44	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	102	0	0	284	49	14.71	-	-	-	A	64808758	G	A	64808758	2	1	59	1	0	0	0	0	0	0	0	1	17547	933	33	2		2	XPOT	12	64808758	Silent	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	2021920	64808758	69043137	31	2936										
CNOT2	0	genome.wustl.edu	37	chr12	70724100	70724100	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	atgaatcctaggaatatgatGaaccactcccaggttggtca	9	9	1	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	12	70724100	70724100	G	T	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.420	p.M140I	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	144	0	0	72	15	17.24	-	-	-	T	70724100	G	T	70724100	3	4	59	1	0	0	0	0	1	0	0	0	3649	1290	45	2	438	2	CNOT2	12	70724100	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	5915342	70724100	63127795	32	2937										
PTPRB	0	genome.wustl.edu	37	chr12	70932782	70932782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	acatgactggtttcggcccaCgtcttttaactcctgttagg	9	11	1	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	12	70932782	70932782	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.5791	p.V1931M	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	170	0	0	202	38	15.77	-	-	-	T	70932782	C	T	70932782	3	4	59	1	0	0	0	0	1	0	0	0	12879	536	19	1	888	1	PTPRB	12	70932782	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	208682	70932782	62919113	33	2938										
SUCLA2	0	genome.wustl.edu	37	chr13	48528339	48528339	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggactgtagcaccaccaccaAcatcaaggaagttggctgga	11	11	1	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	13	48528339	48528339	A	C	SNP	SUCLA2	ENST00000378654	human	ensembl	69_37n	-1	known	missense	c.1043	p.V348G	1.000	pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLA2	HGNC	ENSG00000136143	60	0	0	37	22	37.29	-	-	-	C	48528339	A	C	48528339	3	2	59	1	0	0	0	0	1	0	0	0	15454	43	2	5	364	5	SUCLA2	13	48528339	Missense_Mutation	SNP	A	TCGA-A2-A0SW-01A-11D-A099-09		48528339	66641539	34	2939										
NID2	0	genome.wustl.edu	37	chr14	52481149	52481149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ggccggggcgtgggccggacCatgggtggagcgacggtggg	24	9	0	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	14	52481149	52481149	C	G	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.3276	p.M1092I	0.000	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	155	1	0.64	29	7	19.44	-	-	-	G	52481149	C	G	52481149	3	3	59	1	0	0	0	0	1	0	0	0	10487	594	21	4	879	4	NID2	14	52481149	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		52481149	54868391	35	2940										
PPP4R4	0	genome.wustl.edu	37	chr14	94741774	94741774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cttttctcctaatactccctTaccgagtacttcccgtggga	6	14	1	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	14	94741774	94741774	T	C	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	missense	c.2513	p.L838S	0.009	NULL	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	322	0	0	82	45	35.43	-	-	-	C	94741774	T	C	94741774	3	2	59	1	0	0	0	0	1	0	0	0	12482	1764	61	5	2680	5	PPP4R4	14	94741774	Missense_Mutation	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09	42260625	94741774	12607766	36	2941										
SERPINA4	0	genome.wustl.edu	37	chr14	95029874	95029874	+	Frame_Shift_Del	DEL	C	C	-													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	ttggactactggccctttctCatggccagctgcacgttgag							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	14	95029874	95029874	C	-	DEL	SERPINA4	ENST00000298841	human	ensembl	69_37n	1	known	frame_shift_del	c.55	p.H19fs	0.006	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	81	0	0	18	2	10	-	-	-	-	95029874	C	-	95029874	7	5	59	1	0	1	0	1	0	0	0	0	14179	826	29	0	57	0	SERPINA4	14	95029874	Frame_Shift_Del	DEL	C	TCGA-A2-A0SW-01A-11D-A099-09	288100	95029874	12319666	37	2942										
MCTP2	0	genome.wustl.edu	37	chr15	95022241	95022241	+	Frame_Shift_Del	DEL	G	G	-													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cagcagccacagccccctgcGgaagaagcgcagcgctctct							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	15	95022241	95022241	G	-	DEL	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	frame_shift_del	c.2615	p.K873fs	1.000	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	146	0	0	9	2	18.18	-	-	-	-	95022241	G	-	95022241	7	5	59	1	0	1	0	1	0	0	0	0	9472	1116	39	0	2777	0	MCTP2	15	95022241	Frame_Shift_Del	DEL	G	TCGA-A2-A0SW-01A-11D-A099-09		95022241	7509151	38	2943										
TP53	0	genome.wustl.edu	37	chr17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cccaggacaggcacaaacacGcacctcaaagctgttccgtc	8	16	1	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	184	0	0	20	16	44.44	-	-	-	A	7577121	G	A	7577121	3	1	59	1	0	0	0	0	1	0	0	0	16477	1087	38	1	469	1	TP53	17	7577121	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09		7577121	73618089	39	2944										
ABCA10	0	genome.wustl.edu	37	chr17	67148549	67148549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	catacggtcacacacagcctCagcctctgacatgtaatggg	9	13	3	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	17	67148549	67148549	C	T	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.4210	p.E1404K	0.983	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	224	0	0	121	23	15.97	-	-	-	T	67148549	C	T	67148549	3	4	59	1	0	0	0	0	1	0	0	0	29	835	29	2	441	2	ABCA10	17	67148549	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	59571428	67148549	14046661	40	2945										
FOXJ1	0	genome.wustl.edu	37	chr17	74133620	74133620	+	Frame_Shift_Del	DEL	C	C	-													0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gcagcctgctccaccgaaggCccccaggtggcagggcagtc							TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	17	74133620	74133620	C	-	DEL	FOXJ1	ENST00000322957	human	ensembl	69_37n	-1	known	frame_shift_del	c.1080	p.P361fs	0.832	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ1	HGNC	ENSG00000129654	10	0	0	4	2	33.33	-	-	-	-	74133620	C	-	74133620	7	5	59	1	0	1	0	1	0	0	0	0	6059	726	26	0	189	0	FOXJ1	17	74133620	Frame_Shift_Del	DEL	C	TCGA-A2-A0SW-01A-11D-A099-09	6985071	74133620	7061590	41	2946										
SERPINB12	0	genome.wustl.edu	37	chr18	61225627	61225627	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cccagaatgaaagcaaagaaCctgacccttgtctgaaaagc	8	11	1	5			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	18	61225627	61225627	C	G	SNP	SERPINB12	ENST00000269491	human	ensembl	69_37n	1	known	missense	c.211	p.P71A	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634	239	1	0.42	92	25	21.37	-	-	-	G	61225627	C	G	61225627	3	3	59	1	0	0	0	0	1	0	0	0	14187	507	18	4	217	4	SERPINB12	18	61225627	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09		61225627	16851621	42	2947										
RTBDN	0	genome.wustl.edu	37	chr19	12945620	12945620	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tccaaggtggggagggattcTgtagccgagaagcgtcctct	15	9	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	19	12945620	12945620	T	C	SNP	RTBDN	ENST00000322912	human	ensembl	69_37n	-1	known	silent	c.57	p.T19	0.008	NULL	pfam_Folate_rcpt-like	-	no_errors	RTBDN	HGNC	ENSG00000132026	84	0	0	19	12	38.71	-	-	-	C	12945620	T	C	12945620	2	2	59	1	0	0	0	0	0	0	0	1	13803	1567	55	5		5	RTBDN	19	12945620	Silent	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09		12945620	46183363	43	2948										
RPL18A	0	genome.wustl.edu	37	chr19	17974037	17974037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	tgcgccgtcagcacaagccaCgcttcaccaccaagaggccc	9	18	2	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	19	17974037	17974037	C	T	SNP	RPL18A	ENST00000222247	human	ensembl	69_37n	1	known	missense	c.496	p.R166C	0.998	NULL	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640	51	0	0	16	12	42.86	-	-	-	T	17974037	C	T	17974037	3	4	59	1	0	0	0	0	1	0	0	0	13651	536	19	1	514	1	RPL18A	19	17974037	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	5028417	17974037	41154946	44	2949										
XRCC1	0	genome.wustl.edu	37	chr19	44079136	44079136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	gtaagtgtctgccttgagaaGattttctgcacagtgagtct	11	7	3	3			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	19	44079136	44079136	G	A	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	missense	c.70	p.L24F	1.000	pfam_Xrcc1_N,superfamily_Galactose-bd-like	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	92	0	0	38	18	32.14	-	-	-	A	44079136	G	A	44079136	3	1	59	1	0	0	0	0	1	0	0	0	17549	942	33	2	1895	2	XRCC1	19	44079136	Missense_Mutation	SNP	G	TCGA-A2-A0SW-01A-11D-A099-09	26105099	44079136	15049847	45	2950										
ZNF160	0	genome.wustl.edu	37	chr19	53571424	53571424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	cacactcattacatttgtaaCgcttttctccagtgtggatt	6	10	2	0			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	19	53571424	53571424	C	T	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.2363	p.R788H	0.886	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	145	0	0	108	36	25	-	-	-	T	53571424	C	T	53571424	3	4	59	1	0	0	0	0	1	0	0	0	17835	536	19	1	97	1	ZNF160	19	53571424	Missense_Mutation	SNP	C	TCGA-A2-A0SW-01A-11D-A099-09	9492288	53571424	5557559	46	2951										
PAK7	0	genome.wustl.edu	37	chr20	9546839	9546839	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170212765957447	8	0.0536296619557019	2.46902654867257	1.85176991150442	2.59247787610619	0.0152200740436034	0.179340149574026	0	caggtaggaagccgtggagaTgtactgcgaactgctctgca	14	9	1	1			TCGA-A2-A0SW-01A-11D-A099-09	TCGA-A2-A0SW-10A-01W-A097-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fbd2807-a5bb-4030-a299-524ec3ab4543	1dfaec53-f1d6-46ff-82af-a90cb3cf69ae	20	9546839	9546839	T	G	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	missense	c.1183	p.I395L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	106	0	0	58	16	21.62	-	-	-	G	9546839	T	G	9546839	3	3	59	1	0	0	0	0	1	0	0	0	11478	1464	51	5	1000	5	PAK7	20	9546839	Missense_Mutation	SNP	T	TCGA-A2-A0SW-01A-11D-A099-09		9546839	53478681	47	2952										
ARHGEF2	0	genome.wustl.edu	37	chr1	155921009	155921009	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gcacagcttctcccgccgctCagggccctcagggaaccggg	13	17	3	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	155921009	155921009	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2317	p.E773K	0.879	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	11	0	0	17	5	22.73	-	-	-	T	155921009	C	T	155921009	3	4	60	1	0	0	0	0	1	0	0	0	905	835	29	2	658	2	ARHGEF2	1	155921009	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		155921009	93329612	1	2953										
SMYD2	0	genome.wustl.edu	37	chr1	214491454	214491454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gagagaacaccttcggaaaaAttgttagctgtgaaggagtt	12	5	0	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	214491454	214491454	A	G	SNP	SMYD2	ENST00000366957	human	ensembl	69_37n	1	known	silent	c.381	p.K127	0.043	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499	180	0	0	69	78	53.06	-	-	-	G	214491454	A	G	214491454	2	3	60	1	0	0	0	0	0	0	0	1	14911	98	4	5		5	SMYD2	1	214491454	Silent	SNP	A	TCGA-A2-A0SX-01A-12D-A099-09	58570445	214491454	34759167	2	2954										
MTR	0	genome.wustl.edu	37	chr1	237015858	237015858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	cagaataagtggaggtctttCcaacttgtccttctccttcc	7	12	2	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237015858	237015858	C	T	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	missense	c.1733	p.S578F	1.000	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	69	0	0	98	16	14.04	-	-	-	T	237015858	C	T	237015858	3	4	60	1	0	0	0	0	1	0	0	0	10030	855	30	2	1799	2	MTR	1	237015858	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09	22524404	237015858	12234763	3	2955										
MTR	0	genome.wustl.edu	37	chr1	237023136	237023136	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	tttcaatttcaattcagactCaaggcacaggagggaagaaa	9	7	4	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237023136	237023136	C	A	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	missense	c.1957	p.Q653K	0.644	pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	127	0	0	113	18	13.74	-	-	-	A	237023136	C	A	237023136	3	1	60	1	0	0	0	0	1	0	0	0	10030	827	29	2	2031	2	MTR	1	237023136	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09	7278	237023136	12227485	4	2956										
SOS1	0	genome.wustl.edu	37	chr2	39281877	39281877	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	ttttaccaaatcatagtaagTttgttctcctgaggtggaag	9	6	2	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	39281877	39281877	T	C	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	missense	c.598	p.T200A	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	188	0	0	116	37	24.03	-	-	-	C	39281877	T	C	39281877	3	2	60	1	0	0	0	0	1	0	0	0	15025	1725	60	5	3479	5	SOS1	2	39281877	Missense_Mutation	SNP	T	TCGA-A2-A0SX-01A-12D-A099-09		39281877	203917496	5	2957										
RHOQ	0	genome.wustl.edu	37	chr2	46803351	46803351	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	tgggtaccggaacttaaggaAtacgcaccaaatgtaccctt	9	10	0	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	46803351	46803351	A	G	SNP	RHOQ	ENST00000238738	human	ensembl	69_37n	1	known	silent	c.327	p.E109	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729	152	1	0.65	89	42	32.06	-	-	-	G	46803351	A	G	46803351	2	3	60	1	0	0	0	0	0	0	0	1	13426	98	4	5		5	RHOQ	2	46803351	Silent	SNP	A	TCGA-A2-A0SX-01A-12D-A099-09	7521474	46803351	196396022	6	2958										
CTNNA2	0	genome.wustl.edu	37	chr2	80136851	80136851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	tgcacgcgagacgaccggcgCgagaggatcgtggcggagtg	19	10	0	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	80136851	80136851	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	silent	c.1086	p.R362	0.309	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	35	0	0	22	5	18.52	-	-	-	T	80136851	C	T	80136851	2	4	60	1	0	0	0	0	0	0	0	1	4045	755	27	1		1	CTNNA2	2	80136851	Silent	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09	33333500	80136851	163062522	7	2959										
FARP2	0	genome.wustl.edu	37	chr2	242312707	242312707	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	ggaaatatttgacattgaggTaagaagcatgatttttggag	12	2	0	4			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	242312707	242312707	T	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	splice_site	c.183+2	e1+2	1.000	-	-	-	no_errors	FARP2	HGNC	ENSG00000006607	93	0	0	76	32	29.09	-	-	-	A	242312707	T	A	242312707	5	1	60	1	0	0	0	0	0	0	1	0	5723	1652	57	5	187	5	FARP2	2	242312707	Splice_Site	SNP	T	TCGA-A2-A0SX-01A-12D-A099-09	162175856	242312707	886666	8	2960										
HIST1H3B	0	genome.wustl.edu	37	chr6	26031937	26031937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gtctttgggcataatagtcaCtcgcttagcatggatggcgc	12	9	2	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	6	26031937	26031937	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.352	p.V118M	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	68	0	0	63	15	19.23	-	-	-	T	26031937	C	T	26031937	3	4	60	1	0	0	0	0	1	0	0	0	7207	565	20	4	62	4	HIST1H3B	6	26031937	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		26031937	145083130	9	2961										
KIAA2026	0	genome.wustl.edu	37	chr9	5921255	5921255	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	tgaagtatttacaattgcttGacctatgtttagtccaattt	6	6	0	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	9	5921255	5921255	G	T	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.4741	p.Q1581K	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	317	1	0.31	194	89	31.45	-	-	-	T	5921255	G	T	5921255	3	4	60	1	0	0	0	0	1	0	0	0	8322	1299	45	2	1574	2	KIAA2026	9	5921255	Missense_Mutation	SNP	G	TCGA-A2-A0SX-01A-12D-A099-09		5921255	135292176	10	2962										
LGR4	0	genome.wustl.edu	37	chr11	27393924	27393924	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	caaaatgcacagcactgataAgcatatggtactgataaaga	8	7	0	3			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	11	27393924	27393924	A	C	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	silent	c.1401	p.A467	1.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	191	1	0.52	75	17	18.48	-	-	-	C	27393924	A	C	27393924	2	2	60	1	0	0	0	0	0	0	0	1	8811	59	3	5		5	LGR4	11	27393924	Silent	SNP	A	TCGA-A2-A0SX-01A-12D-A099-09		27393924	107612592	11	2963										
ANKRD11	0	genome.wustl.edu	37	chr16	89349106	89349106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	agcctcttcttccaacttttCaagcaggcttttttccgcgt	6	13	3	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	16	89349106	89349106	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.3844	p.E1282K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	86	0	0	46	15	24.59	-	-	-	T	89349106	C	T	89349106	3	4	60	1	0	0	0	0	1	0	0	0	639	835	29	2	4167	2	ANKRD11	16	89349106	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		89349106	1005647	12	2964										
TP53	0	genome.wustl.edu	37	chr17	7578253	7578253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	aatactccacacgcaaatttCcttccactcggataagatgc	5	13	0	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	7578253	7578253	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.596	p.G199V	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	212	0	0	74	69	47.59	-	-	-	A	7578253	C	A	7578253	3	1	60	1	0	0	0	0	1	0	0	0	16477	855	30	2	698	2	TP53	17	7578253	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		7578253	73616957	13	2965										
MYH13	0	genome.wustl.edu	37	chr17	10248682	10248682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	tgatgcacagctgctccaggCtgttgaactgggtgattcaa	12	9	1	3			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	10248682	10248682	C	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.1421	p.S474N	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	270	0	0	128	138	51.49	-	-	-	T	10248682	C	T	10248682	3	4	60	1	0	0	0	0	1	0	0	0	10104	797	28	4	4503	4	MYH13	17	10248682	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09	2670429	10248682	70946528	14	2966										
CACNB1	0	genome.wustl.edu	37	chr17	37347809	37347809	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	cctcctccagagatacatcaGagtctgatggacggctggtg	12	11	2	3			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	37347809	37347809	G	T	SNP	CACNB1	ENST00000394303	human	ensembl	69_37n	-1	known	missense	c.209	p.S70Y	1.000	pfam_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	124	0	0	61	9	12.86	-	-	-	T	37347809	G	T	37347809	3	4	60	1	0	0	0	0	1	0	0	0	2577	942	33	2	1899	2	CACNB1	17	37347809	Missense_Mutation	SNP	G	TCGA-A2-A0SX-01A-12D-A099-09	27099127	37347809	43847401	15	2967										
CHST9	0	genome.wustl.edu	37	chr18	24497058	24497058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	cctcagttttcttccatttaTtatctttgactaaacttttg	3	9	3	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	18	24497058	24497058	T	G	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.497	p.N166T	0.030	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	226	0	0	78	73	48.03	-	-	-	G	24497058	T	G	24497058	3	3	60	1	0	0	0	0	1	0	0	0	3440	1493	52	5	838	5	CHST9	18	24497058	Missense_Mutation	SNP	T	TCGA-A2-A0SX-01A-12D-A099-09		24497058	53580190	16	2968										
NOTCH3	0	genome.wustl.edu	37	chr19	15281551	15281551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	caacgctcccaggtagtcagCggcgctctgggcatcgggga	15	13	2	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	15281551	15281551	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.4822	p.A1608T	0.999	pfam_Notch_NODP_dom,pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	17	0	0	10	10	47.62	-	-	-	T	15281551	C	T	15281551	3	4	60	1	0	0	0	0	1	0	0	0	10622	768	27	1	2175	1	NOTCH3	19	15281551	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		15281551	43847432	17	2969										
KIR2DL1	0	genome.wustl.edu	37	chr19	55284926	55284926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gatgtttaacgacactttgcGcctcattggagaacaccatg	9	10	1	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	55284926	55284926	G	A	SNP	KIR2DL1	ENST00000336077	human	ensembl	69_37n	1	known	missense	c.212	p.R71H	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498	479	0	0	258	98	27.53	-	-	-	A	55284926	G	A	55284926	3	1	60	1	0	0	0	0	1	0	0	0	8369	1087	38	1	222	1	KIR2DL1	19	55284926	Missense_Mutation	SNP	G	TCGA-A2-A0SX-01A-12D-A099-09	40003375	55284926	3844057	18	2970										
ATP9A	0	genome.wustl.edu	37	chr20	50273503	50273503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	ggggctggatgcctggtataCgcggcaggagtcttcgtact	16	9	1	0			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	20	50273503	50273503	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.1480	p.V494I	0.992	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	101	0	0	92	31	25.2	-	-	-	T	50273503	C	T	50273503	3	4	60	1	0	0	0	0	1	0	0	0	1202	536	19	1	1723	1	ATP9A	20	50273503	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		50273503	12752017	19	2971										
KCNJ6	0	genome.wustl.edu	37	chr21	39087178	39087178	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gtgtaaaccatgacaaaaatCaataggttgaatctccactt	6	8	2	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	21	39087178	39087178	C	A	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	missense	c.282	p.L94F	0.977	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	160	0	0	148	19	11.38	-	-	-	A	39087178	C	A	39087178	3	1	60	1	0	0	0	0	1	0	0	0	8109	825	29	2	997	2	KCNJ6	21	39087178	Missense_Mutation	SNP	C	TCGA-A2-A0SX-01A-12D-A099-09		39087178	9042717	20	2972										
PPEF1	0	genome.wustl.edu	37	chrX	18800500	18800500	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	ttaggtatggcttcacgaaaGaaattttgcataaatataag	8	4	1	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	18800500	18800500	G	T	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	nonsense	c.742	p.E248*	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	278	0	0	123	41	23.98	-	-	-	T	18800500	G	T	18800500	4	4	60	1	0	0	0	0	0	1	0	0	12380	943	33	2	772	2	PPEF1	23	18800500	Nonsense_Mutation	SNP	G	TCGA-A2-A0SX-01A-12D-A099-09		18800500	136470060	21	2973										
BMP15	0	genome.wustl.edu	37	chrX	50659301	50659301	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	gggcctgaaaataaccagtgTtccctccaccctttccaaat	6	14	0	1			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	50659301	50659301	T	C	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	1	known	silent	c.873	p.C291	0.931	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	127	1	0.78	80	30	27.27	-	-	-	C	50659301	T	C	50659301	2	2	60	1	0	0	0	0	0	0	0	1	1463	1731	60	5		5	BMP15	23	50659301	Silent	SNP	T	TCGA-A2-A0SX-01A-12D-A099-09	31858801	50659301	104611259	22	2974										
STAG2	0	genome.wustl.edu	37	chrX	123195704	123195704	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.712321054740252	1.57706093189964	NA	1.57706093189964	0.461538461538461	1	0	ctgaatgtcatcctcccgtgGgaagagggacaggaaaaagg	14	8	1	2			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	123195704	123195704	G	T	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	nonsense	c.1618	p.G540*	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	154	0	0	81	34	29.57	-	-	-	T	123195704	G	T	123195704	4	4	60	1	0	0	0	0	0	1	0	0	15334	1233	43	4	1676	4	STAG2	23	123195704	Nonsense_Mutation	SNP	G	TCGA-A2-A0SX-01A-12D-A099-09	72536403	123195704	32074856	23	2975										
MEGF6	0	genome.wustl.edu	37	chr1	3519148	3519148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	caccagggtcagctcctgctCagcacacacgtggggcctgg	13	15	2	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	3519148	3519148	C	G	SNP	MEGF6	ENST00000356575	human	ensembl	69_37n	-1	known	missense	c.148	p.E50Q	0.915	pfscan_EMI_domain	pfam_EGF_laminin,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591	29	0	0	22	5	18.52	-	-	-	G	3519148	C	G	3519148	3	3	61	1	0	0	0	0	1	0	0	0	9533	835	29	2	4621	2	MEGF6	1	3519148	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		3519148	245731473	1	2976										
UBE4B	0	genome.wustl.edu	37	chr1	10177641	10177642	+	Frame_Shift_Ins	INS	-	-	A													0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cgaccgagttggaatagaggINSaaaaaaaagcaccaaaggta							TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	10177641	10177642	-	A	INS	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	frame_shift_ins	c.1321_1322	p.A444fs	1.000:1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	56	0	0	42	15	26.32	-	-	-	A	10177642	-	A	10177641	7	5	61	1	0	1	1	0	0	0	0	0	16980	1175	41	0	1351	0	UBE4B	1	10177641	Frame_Shift_Ins	INS	-	TCGA-A2-A0SY-01A-31D-A099-09	6658493	10177641	239072980	2	2977										
PLK3	0	genome.wustl.edu	37	chr1	45271021	45271021	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtcaagacggatcaggctctCctcatgctgtttagtgatgg	12	9	4	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	45271021	45271021	C	T	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	1	known	silent	c.1719	p.L573	0.001	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	162	0	0	147	57	27.94	-	-	-	T	45271021	C	T	45271021	2	4	61	1	0	0	0	0	0	0	0	1	12171	842	30	2		2	PLK3	1	45271021	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	35093380	45271021	203979600	3	2978										
PLK3	0	genome.wustl.edu	37	chr1	45271308	45271308	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccagacctgcggcagcgactCcgctatgctctgcgcctgct	11	17	1	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	45271308	45271308	C	G	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	1	known	silent	c.1899	p.L633	0.003	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	60	0	0	41	19	31.67	-	-	-	G	45271308	C	G	45271308	2	3	61	1	0	0	0	0	0	0	0	1	12171	842	30	2		2	PLK3	1	45271308	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	287	45271308	203979313	4	2979										
ABCA4	0	genome.wustl.edu	37	chr1	94510272	94510272	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aacgagcacagtcccagaggTtggtggcaacagacccgtca	12	12	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	94510272	94510272	T	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.2947	p.T983S	0.998	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	166	1	0.6	74	46	38.33	-	-	-	A	94510272	T	A	94510272	3	1	61	1	0	0	0	0	1	0	0	0	34	1725	60	5	3998	5	ABCA4	1	94510272	Missense_Mutation	SNP	T	TCGA-A2-A0SY-01A-31D-A099-09	49238964	94510272	154740349	5	2980										
ITGA10	0	genome.wustl.edu	37	chr1	145538042	145538042	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tcctctctcctgagccaggtCttcgtgaagctgactgccag	10	14	2	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	145538042	145538042	C	A	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	silent	c.2721	p.V907	0.983	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	156	0	0	138	40	22.47	-	-	-	A	145538042	C	A	145538042	2	1	61	1	0	0	0	0	0	0	0	1	7927	900	32	2		2	ITGA10	1	145538042	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	51027770	145538042	103712579	6	2981										
NCF2	0	genome.wustl.edu	37	chr1	183542412	183542412	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cacagggatcaccactggctCatatagcttctgcttctgta	8	12	4	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	183542412	183542412	C	T	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	missense	c.517	p.E173K	0.996	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	119	0	0	133	42	24	-	-	-	T	183542412	C	T	183542412	3	4	61	1	0	0	0	0	1	0	0	0	10289	835	29	2	1107	2	NCF2	1	183542412	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	38004370	183542412	65708209	7	2982										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209933475	209933475	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	agcgcaggcaagagatccgtGaaagccgccgctgccgtccc	13	15	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	209933475	209933475	G	A	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	0.895	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	37	0	0	70	16	18.6	-	-	-	A	209933475	G	A	209933475	3	1	61	1	0	0	0	0	1	0	0	0	16538	1291	45	2	93	2	TRAF3IP3	1	209933475	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	26391063	209933475	39317146	8	2983										
MTR	0	genome.wustl.edu	37	chr1	236988693	236988693	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccttctatgatggccaagcaCctaaaggtcaggggtccccc	10	14	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	236988693	236988693	C	T	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	silent	c.921	p.H307	0.798	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_MetH,pfscan_S_MeTrfase,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	145	0	0	122	38	23.75	-	-	-	T	236988693	C	T	236988693	2	4	61	1	0	0	0	0	0	0	0	1	10030	506	18	4		4	MTR	1	236988693	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	27055218	236988693	12261928	9	2984										
OR2B11	0	genome.wustl.edu	37	chr1	247614687	247614687	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cagcacagccagtatggtgtCattcacagcggtgtcagcac	11	12	3	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	247614687	247614687	C	T	SNP	OR2B11	ENST00000318749	human	ensembl	69_37n	-1	known	missense	c.598	p.D200N	0.044	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2B11	HGNC	ENSG00000177535	88	0	0	94	28	22.76	-	-	-	T	247614687	C	T	247614687	3	4	61	1	0	0	0	0	1	0	0	0	11061	826	29	2	358	2	OR2B11	1	247614687	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	10625994	247614687	1635934	10	2985										
OR14I1	0	genome.wustl.edu	37	chr1	248845388	248845388	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tggatttaggcacagtgactGagatgtagcacagatccaaa	11	7	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	1	248845388	248845388	G	C	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	nonsense	c.218	p.S73*	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	194	0	0	166	45	21.33	-	-	-	C	248845388	G	C	248845388	4	2	61	1	0	0	0	0	0	1	0	0	11020	1294	45	2	721	2	OR14I1	1	248845388	Nonsense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	1230701	248845388	405233	11	2986										
APOB	0	genome.wustl.edu	37	chr2	21247970	21247970	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tctttaatcagcttctcaacActgagcattattccatttac	3	11	3	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	21247970	21247970	A	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.2271	p.S757	0.000	pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	99	0	0	99	29	22.66	-	-	-	G	21247970	A	G	21247970	2	3	61	1	0	0	0	0	0	0	0	1	787	156	6	5		5	APOB	2	21247970	Silent	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09		21247970	221951403	12	2987										
WDR33	0	genome.wustl.edu	37	chr2	128476996	128476996	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cctggggtggaggtcctaaaGagccctggggcggcccctgc	17	13	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	128476996	128476996	G	C	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.2603	p.S868C	0.939	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	63	0	0	39	19	32.76	-	-	-	C	128476996	G	C	128476996	3	2	61	1	0	0	0	0	1	0	0	0	17384	942	33	2	1435	2	WDR33	2	128476996	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	107229026	128476996	114722377	13	2988										
SCN1A	0	genome.wustl.edu	37	chr2	166848244	166848244	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaatccatggcaatgagctgGagtttgtttggttgtggcag	14	5	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	166848244	166848244	G	C	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	silent	c.5541	p.L1847	0.872	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	117	0	0	107	34	24.11	-	-	-	C	166848244	G	C	166848244	2	2	61	1	0	0	0	0	0	0	0	1	14002	1161	41	2		2	SCN1A	2	166848244	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	38371248	166848244	76351129	14	2989										
TTN	0	genome.wustl.edu	37	chr2	179560781	179560781	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttcatagtcttcatctggttCttcataataaggttgttcaa	6	7	7	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	179560781	179560781	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.27286	p.E9096Q	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	494	0	0	330	151	31.39	-	-	-	G	179560781	C	G	179560781	3	3	61	1	0	0	0	0	1	0	0	0	16832	922	32	2	73507	2	TTN	2	179560781	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	12712537	179560781	63638592	15	2990										
TTN	0	genome.wustl.edu	37	chr2	179584560	179584560	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctctatgattcttgctggttCtaaaagaagaagtattttgc	8	6	3	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	179584560	179584560	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	splice_site	c.19928-1	e78-1	1.000	-	-	-	no_errors	TTN	HGNC	ENSG00000155657	185	0	0	146	72	33.03	-	-	-	G	179584560	C	G	179584560	5	3	61	1	0	0	0	0	0	0	1	0	16832	927	32	2	80994	2	TTN	2	179584560	Splice_Site	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	23779	179584560	63614813	16	2991										
KIF1A	0	genome.wustl.edu	37	chr2	241712662	241712662	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgcagcggatctgcttggccCggtcagcatacctgggtggc	15	12	2	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	2	241712662	241712662	C	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.1049	p.R350L	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	140	0	0	92	33	26.4	-	-	-	A	241712662	C	A	241712662	3	1	61	1	0	0	0	0	1	0	0	0	8335	652	23	3	4163	3	KIF1A	2	241712662	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	62128102	241712662	1486711	17	2992										
RARB	0	genome.wustl.edu	37	chr3	25502710	25502710	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaacacagagcaccagctctGaggaactcgtcccaagcccc	8	16	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	25502710	25502710	G	C	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	missense	c.205	p.E69Q	1.000	prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	271	0	0	172	79	31.47	-	-	-	C	25502710	G	C	25502710	3	2	61	1	0	0	0	0	1	0	0	0	13136	1291	45	2	190	2	RARB	3	25502710	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		25502710	172519720	18	2993										
TRANK1	0	genome.wustl.edu	37	chr3	36902452	36902452	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttccgctggtcccaggtgctGagatgggggatgatggtaca	16	8	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	36902452	36902452	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	silent	c.1308	p.L436	0.801	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	223	0	0	180	105	36.84	-	-	-	A	36902452	G	A	36902452	2	1	61	1	0	0	0	0	0	0	0	1	16550	1277	45	2		2	TRANK1	3	36902452	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	11399742	36902452	161119978	19	2994										
TRANK1	0	genome.wustl.edu	37	chr3	36902596	36902596	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgtttttccaataagaatttGaagacggtggtggcacagtc	11	6	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	36902596	36902596	G	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1164	p.F388L	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	165	0	0	174	66	27.5	-	-	-	C	36902596	G	C	36902596	3	2	61	1	0	0	0	0	1	0	0	0	16550	1281	45	2	7669	2	TRANK1	3	36902596	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	144	36902596	161119834	20	2995										
TGM4	0	genome.wustl.edu	37	chr3	44945471	44945471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ggacgcaacgccgcaggagcGaagccagggtgagtgggtgg	20	9	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	44945471	44945471	G	A	SNP	TGM4	ENST00000296125	human	ensembl	69_37n	1	known	missense	c.1067	p.R356Q	0.937	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810	29	0	0	37	22	37.29	-	-	-	A	44945471	G	A	44945471	3	1	61	1	0	0	0	0	1	0	0	0	15927	1058	37	1	1101	1	TGM4	3	44945471	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	8042875	44945471	153076959	21	2996										
GRM2	0	genome.wustl.edu	37	chr3	51743248	51743248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cacctgctgcctggcgtgcgCctgggtgcacacatcctcga	12	16	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	51743248	51743248	C	T	SNP	GRM2	ENST00000395052	human	ensembl	69_37n	1	known	silent	c.249	p.R83	0.998	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082	36	0	0	36	20	35.71	-	-	-	T	51743248	C	T	51743248	2	4	61	1	0	0	0	0	0	0	0	1	6848	726	26	4		4	GRM2	3	51743248	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	6797777	51743248	146279182	22	2997										
CACNA1D	0	genome.wustl.edu	37	chr3	53757826	53757826	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tcttgacttataggcactggActtccctgagcaacttagtg	9	10	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	53757826	53757826	A	G	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.1960	p.T654A	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	216	0	0	183	72	28.24	-	-	-	G	53757826	A	G	53757826	3	3	61	1	0	0	0	0	1	0	0	0	2566	275	10	5	2126	5	CACNA1D	3	53757826	Missense_Mutation	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09	2014578	53757826	144264604	23	2998										
UMPS	0	genome.wustl.edu	37	chr3	124456998	124456998	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctggatgtgatgaaggagttGataactctggcaaaatgcca	12	6	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	124456998	124456998	G	C	SNP	UMPS	ENST00000232607	human	ensembl	69_37n	1	known	missense	c.894	p.L298F	1.000	pfam_OMPdeCOase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase	pfam_OMPdeCOase_dom,pfam_PRibTrfase,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_clade-1	-	no_errors	UMPS	HGNC	ENSG00000114491	138	0	0	106	38	26.39	-	-	-	C	124456998	G	C	124456998	3	2	61	1	0	0	0	0	1	0	0	0	17078	1281	45	2	904	2	UMPS	3	124456998	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	70699172	124456998	73565432	24	2999										
PIK3CB	0	genome.wustl.edu	37	chr3	138426040	138426040	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	taataaggttgttttttattCtctggaaatttaacatgcaa	6	4	1	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	138426040	138426040	C	G	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.1491	p.E497D	0.995	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	170	0	0	192	66	25.58	-	-	-	G	138426040	C	G	138426040	3	3	61	1	0	0	0	0	1	0	0	0	11988	912	32	2	1775	2	PIK3CB	3	138426040	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	13969042	138426040	59596390	25	3000										
CHST2	0	genome.wustl.edu	37	chr3	142840752	142840752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccgagacccgcgagctcaccGcatgcccttcttggaggccg	12	17	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	142840752	142840752	G	A	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	missense	c.1094	p.R365H	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	12	0	0	8	5	38.46	-	-	-	A	142840752	G	A	142840752	3	1	61	1	0	0	0	0	1	0	0	0	3433	1087	38	1	1096	1	CHST2	3	142840752	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	4414712	142840752	55181678	26	3001										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	143	0	0	78	38	32.76	-	-	-	A	178936091	G	A	178936091	3	1	61	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	36095339	178936091	19086339	27	3002										
MCF2L2	0	genome.wustl.edu	37	chr3	183041052	183041052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	atttacccactgaccgtggcGatattccaaagtccccccta	6	15	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	3	183041052	183041052	G	A	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.574	p.R192C	0.997	pfscan_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	169	0	0	118	56	32.18	-	-	-	A	183041052	G	A	183041052	3	1	61	1	0	0	0	0	1	0	0	0	9451	1058	37	1	2870	1	MCF2L2	3	183041052	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	4104961	183041052	14981378	28	3003										
ADD1	0	genome.wustl.edu	37	chr4	2906605	2906605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	actcctttgctagtgacggtGattcgggcacttgctcccca	10	13	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	2906605	2906605	G	A	SNP	ADD1	ENST00000264758	human	ensembl	69_37n	1	known	missense	c.1276	p.D426N	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	119	0	0	100	35	25.93	-	-	-	A	2906605	G	A	2906605	3	1	61	1	0	0	0	0	1	0	0	0	304	1290	45	2	1310	2	ADD1	4	2906605	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		2906605	188247671	29	3004										
CWH43	0	genome.wustl.edu	37	chr4	49030703	49030703	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tcaggtttggatatgacaatGaagggtggtctagtctagaa	13	4	3	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	49030703	49030703	G	A	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.1324	p.E442K	1.000	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	152	0	0	98	41	29.5	-	-	-	A	49030703	G	A	49030703	3	1	61	1	0	0	0	0	1	0	0	0	4104	1291	45	2	1362	2	CWH43	4	49030703	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	46124098	49030703	142123573	30	3005										
SRP72	0	genome.wustl.edu	37	chr4	57355616	57355616	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gatagtgccattgaggtcttCacacaagctatccagtggta	10	9	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	57355616	57355616	C	T	SNP	SRP72	ENST00000342756	human	ensembl	69_37n	1	known	silent	c.1287	p.F429	1.000	smart_TPR_repeat	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780	212	0	0	129	66	33.85	-	-	-	T	57355616	C	T	57355616	2	4	61	1	0	0	0	0	0	0	0	1	15248	825	29	2		2	SRP72	4	57355616	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	8324913	57355616	133798660	31	3006										
ARHGAP24	0	genome.wustl.edu	37	chr4	86916664	86916664	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cacaggagtgtgggaggtcgAagtagtcgtgccaccagtag	16	8	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	86916664	86916664	A	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	silent	c.1857	p.R619	0.785	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	91	0	0	57	24	29.63	-	-	-	T	86916664	A	T	86916664	2	4	61	1	0	0	0	0	0	0	0	1	875	233	9	5		5	ARHGAP24	4	86916664	Silent	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09	29561048	86916664	104237612	32	3007										
SEC24B	0	genome.wustl.edu	37	chr4	110448569	110448569	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtggatgtacaagctgccatCtgccttctggcaaacatggg	12	10	2	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	110448569	110448569	C	T	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	silent	c.3057	p.I1019	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	208	0	0	122	59	32.6	-	-	-	T	110448569	C	T	110448569	2	4	61	1	0	0	0	0	0	0	0	1	14083	903	32	2		2	SEC24B	4	110448569	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	23531905	110448569	80705707	33	3008										
LARP7	0	genome.wustl.edu	37	chr4	113568490	113568490	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cagacccacatctgagggctCtgacattgagtccactgaac	9	13	2	5			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	113568490	113568490	C	G	SNP	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	missense	c.782	p.S261C	0.998	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	191	0	0	109	54	33.13	-	-	-	G	113568490	C	G	113568490	3	3	61	1	0	0	0	0	1	0	0	0	8687	913	32	2	804	2	LARP7	4	113568490	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	3119921	113568490	77585786	34	3009										
PRMT10	0	genome.wustl.edu	37	chr4	148564057	148564057	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cccaaacatcagcacatactGaggaaagatcttgcctccag	7	13	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	148564057	148564057	G	A	SNP	PRMT10	ENST00000322396	human	ensembl	69_37n	-1	known	nonsense	c.2080	p.Q694*	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169	148	0	0	102	31	23.31	-	-	-	A	148564057	G	A	148564057	4	1	61	1	0	0	0	0	0	1	0	0	12617	1299	45	2	469	2	PRMT10	4	148564057	Nonsense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	34995567	148564057	42590219	35	3010										
FSTL5	0	genome.wustl.edu	37	chr4	163032438	163032438	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgtaccttatgtcgcaatctCattagaggctgataggattt	9	7	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	4	163032438	163032438	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.111	p.M37I	0.167	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	146	0	0	79	43	35.25	-	-	-	T	163032438	C	T	163032438	3	4	61	1	0	0	0	0	1	0	0	0	6129	826	29	2	2492	2	FSTL5	4	163032438	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	14468381	163032438	28121838	36	3011										
DNAH5	0	genome.wustl.edu	37	chr5	13752344	13752344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aataagcaaaggccttccaaGagaaaggctgtcttccaggt	10	9	1	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	13752344	13752344	G	C	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.10927	p.L3643V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	204	0	0	175	75	30	-	-	-	C	13752344	G	C	13752344	3	2	61	1	0	0	0	0	1	0	0	0	4640	942	33	2	3011	2	DNAH5	5	13752344	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		13752344	167162916	37	3012										
MAST4	0	genome.wustl.edu	37	chr5	66396326	66396326	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaccaacaccagacgagttaCacttcttatcaaaacatttc	3	12	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	66396326	66396326	C	G	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.985	p.H329D	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	147	0	0	93	25	21.19	-	-	-	G	66396326	C	G	66396326	3	3	61	1	0	0	0	0	1	0	0	0	9398	478	17	4	1136	4	MAST4	5	66396326	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	52643982	66396326	114518934	38	3013										
CMYA5	0	genome.wustl.edu	37	chr5	79095305	79095305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gacttatcttcatcaacgcaGagagcgagcagttgctcttc	9	11	4	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	79095305	79095305	G	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.12076	p.E4026Q	0.005	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	192	0	0	129	57	30.65	-	-	-	C	79095305	G	C	79095305	3	2	61	1	0	0	0	0	1	0	0	0	3620	943	33	2	12126	2	CMYA5	5	79095305	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	12698979	79095305	101819955	39	3014										
GDF9	0	genome.wustl.edu	37	chr5	132197896	132197896	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtcatgttaaacaaaccattCtgtgctgaaggatgctccag	9	9	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	132197896	132197896	C	G	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.750	p.Q250H	0.000	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	147	0	0	166	56	25.23	-	-	-	G	132197896	C	G	132197896	3	3	61	1	0	0	0	0	1	0	0	0	6371	912	32	2	618	2	GDF9	5	132197896	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	53102591	132197896	48717364	40	3015										
AFF4	0	genome.wustl.edu	37	chr5	132270412	132270412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttctgagactgagaagtgctGggtgcgggtcctactggagt	16	7	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	132270412	132270412	G	A	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	silent	c.345	p.P115	0.792	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	234	0	0	218	179	44.97	-	-	-	A	132270412	G	A	132270412	2	1	61	1	0	0	0	0	0	0	0	1	359	1335	47	4		4	AFF4	5	132270412	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	72516	132270412	48644848	41	3016										
PCDHGA11	0	genome.wustl.edu	37	chr5	140802020	140802020	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttacaaattgataacaagcaGagtgctggacagggagttgg	13	5	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	140802020	140802020	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.1226	p.R409K	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	70	0	0	54	20	27.03	-	-	-	A	140802020	G	A	140802020	3	1	61	1	0	0	0	0	1	0	0	0	11625	942	33	2	1228	2	PCDHGA11	5	140802020	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	8531608	140802020	40113240	42	3017										
ADAMTS2	0	genome.wustl.edu	37	chr5	178552015	178552015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccaacgaccagggcagagctCgcggctgcaggcccggcggc	16	16	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	5	178552015	178552015	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.2917	p.E973K	0.294	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	26	0	0	31	27	46.55	-	-	-	T	178552015	C	T	178552015	3	4	61	1	0	0	0	0	1	0	0	0	265	893	31	1	734	1	ADAMTS2	5	178552015	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	37749995	178552015	2363245	43	3018										
NQO2	0	genome.wustl.edu	37	chr6	3017179	3017179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cgagatgtacacgaagacagGagtcaatggagattctcgat	12	7	2	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	3017179	3017179	G	A	SNP	NQO2	ENST00000338130	human	ensembl	69_37n	1	known	missense	c.479	p.G160E	0.760	pfam_Flavodoxin_fold	pfam_Flavodoxin_fold,pfam_FMN_red	-	no_errors	NQO2	HGNC	ENSG00000124588	87	0	0	58	38	39.58	-	-	-	A	3017179	G	A	3017179	3	1	61	1	0	0	0	0	1	0	0	0	10685	1174	41	2	497	2	NQO2	6	3017179	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		3017179	168097888	44	3019										
TINAG	0	genome.wustl.edu	37	chr6	54191643	54191643	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aattttggggaatgactttaGaagatggttttaaatttcgc	10	3	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	54191643	54191643	G	C	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.553	p.E185Q	1.000	NULL	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	196	0	0	152	56	26.92	-	-	-	C	54191643	G	C	54191643	3	2	61	1	0	0	0	0	1	0	0	0	16016	943	33	2	567	2	TINAG	6	54191643	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	51174464	54191643	116923424	45	3020										
EYS	0	genome.wustl.edu	37	chr6	65301057	65301057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaacttgatctgagaattcaCgagaggattttatttcagtc	8	6	3	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	65301057	65301057	C	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.4703	p.R1568H	1.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	29	0	0	31	6	16.22	-	-	-	T	65301057	C	T	65301057	3	4	61	1	0	0	0	0	1	0	0	0	5369	536	19	1	4648	1	EYS	6	65301057	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	11109414	65301057	105814010	46	3021										
ATG5	0	genome.wustl.edu	37	chr6	106740932	106740932	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tactgtgatgttccaaggaaGagctgaacttgatgcaagaa	11	6	0	5			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	106740932	106740932	G	C	SNP	ATG5	ENST00000343245	human	ensembl	69_37n	-1	known	missense	c.286	p.L96V	1.000	pfam_Autophagy-rel_prot_5	pfam_Autophagy-rel_prot_5	-	no_errors	ATG5	HGNC	ENSG00000057663	143	0	0	100	46	31.51	-	-	-	C	106740932	G	C	106740932	3	2	61	1	0	0	0	0	1	0	0	0	1104	942	33	2	561	2	ATG5	6	106740932	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	41439875	106740932	64374135	47	3022										
LAMA2	0	genome.wustl.edu	37	chr6	129781390	129781390	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cattcactggctgcatgggaGaaacatactttgacaacaaa	8	9	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	129781390	129781390	G	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.6913	p.E2305Q	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	125	0	0	98	42	30	-	-	-	C	129781390	G	C	129781390	3	2	61	1	0	0	0	0	1	0	0	0	8660	943	33	2	7107	2	LAMA2	6	129781390	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	23040458	129781390	41333677	48	3023										
ARG1	0	genome.wustl.edu	37	chr6	131903781	131903781	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	attcccgatgtgccaggattCtcctgggtgactccctgtat	10	12	1	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	131903781	131903781	C	G	SNP	ARG1	ENST00000356962	human	ensembl	69_37n	1	known	missense	c.510	p.F170L	1.000	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG1	HGNC	ENSG00000118520	198	0	0	125	55	30.56	-	-	-	G	131903781	C	G	131903781	3	3	61	1	0	0	0	0	1	0	0	0	859	912	32	2	504	2	ARG1	6	131903781	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	2122391	131903781	39211286	49	3024										
MYB	0	genome.wustl.edu	37	chr6	135515023	135515036	+	Frame_Shift_Del	DEL	CAATGTCCCTCAGC	CAATGTCCCTCAGC	-													0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gcgttacatgtaaatatagtCaatgtccctcagccagctgc							TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	CAATGTCCCTCAGC	CAATGTCCCTCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	6	135515023	135515036	CAATGTCCCTCAGC	-	DEL	MYB	ENST00000341911	human	ensembl	69_37n	1	known	frame_shift_del	c.810_823	p.N271fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Tscrpt_reg_Wos2-domain	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	327	0	0	298	58	16.25	-	-	-	-	135515036	CAATGTCCCTCAGC	-	135515023	7	5	61	1	0	1	0	1	0	0	0	0	10079	813	29	0	836	0	MYB	6	135515023	Frame_Shift_Del	DEL	CAATGTCCCTCAGC	TCGA-A2-A0SY-01A-31D-A099-09	3611242	135515023	35600044	50	3025										
SNX13	0	genome.wustl.edu	37	chr7	17913164	17913164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	agcttaccctgacaaagtatCgcatgatcttgttctggaaa	8	9	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	7	17913164	17913164	C	T	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.740	p.R247Q	1.000	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	144	0	0	98	41	29.5	-	-	-	T	17913164	C	T	17913164	3	4	61	1	0	0	0	0	1	0	0	0	14973	884	31	1	2209	1	SNX13	7	17913164	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		17913164	141225499	51	3026										
PPP1R3A	0	genome.wustl.edu	37	chr7	113558451	113558451	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaactcaactttactgccatCtttttgataaggaggaacca	6	9	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	7	113558451	113558451	C	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.601	p.D201H	1.000	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	155	0	0	170	22	11.46	-	-	-	G	113558451	C	G	113558451	3	3	61	1	0	0	0	0	1	0	0	0	12448	913	32	2	2783	2	PPP1R3A	7	113558451	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	95645287	113558451	45580212	52	3027										
KCND2	0	genome.wustl.edu	37	chr7	120387763	120387763	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtttaaatgccaaaatggaaGagtgtgttaaactaaactgt	9	4	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	7	120387763	120387763	G	C	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.1744	p.E582Q	1.000	prints_K_chnl_volt-dep_Kv4.2	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	133	0	0	72	23	24.21	-	-	-	C	120387763	G	C	120387763	3	2	61	1	0	0	0	0	1	0	0	0	8073	943	33	2	1766	2	KCND2	7	120387763	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	6829312	120387763	38750900	53	3028										
ARHGEF10	0	genome.wustl.edu	37	chr8	1844604	1844604	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccacaaagcccgcttttcttGaatttttaaaggtaagcgct	7	10	1	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	1844604	1844604	G	C	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	missense	c.1621	p.E541Q	0.989	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	148	0	0	89	47	34.56	-	-	-	C	1844604	G	C	1844604	3	2	61	1	0	0	0	0	1	0	0	0	896	1291	45	2	1596	2	ARHGEF10	8	1844604	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		1844604	144519418	54	3029										
LPL	0	genome.wustl.edu	37	chr8	19818493	19818493	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gaactactcatgttgaagctCaaatggaagagtgattcata	9	6	3	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	19818493	19818493	C	G	SNP	LPL	ENST00000311322	human	ensembl	69_37n	1	known	silent	c.1221	p.L407	0.154	pirsf_Lipoprotein_lipase_LIPH,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_Lipase,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_Lipo_Lipase,prints_Lipase,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445	122	0	0	84	37	30.58	-	-	-	G	19818493	C	G	19818493	2	3	61	1	0	0	0	0	0	0	0	1	8987	813	29	2		2	LPL	8	19818493	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	17973889	19818493	126545529	55	3030										
AGPAT6	0	genome.wustl.edu	37	chr8	41471927	41471927	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgactgaacatgtgcaagatAaaagcaagctgcctatcctc	8	10	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	41471927	41471927	A	G	SNP	AGPAT6	ENST00000396987	human	ensembl	69_37n	1	known	missense	c.934	p.K312E	1.000	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT6	HGNC	ENSG00000158669	97	0	0	55	37	40.22	-	-	-	G	41471927	A	G	41471927	3	3	61	1	0	0	0	0	1	0	0	0	391	363	13	5	964	5	AGPAT6	8	41471927	Missense_Mutation	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09	21653434	41471927	104892095	56	3031										
EIF2C2	0	genome.wustl.edu	37	chr8	141570514	141570514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tccagagagaaggccggacgGactgatggaagccaaaccac	13	11	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	141570514	141570514	G	A	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.614	p.S205F	1.000	pfam_DUF1785,superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	71	0	0	45	14	23.73	-	-	-	A	141570514	G	A	141570514	3	1	61	1	0	0	0	0	1	0	0	0	5041	1174	41	2	2025	2	EIF2C2	8	141570514	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	100098587	141570514	4793508	57	3032										
HEATR7A	0	genome.wustl.edu	37	chr8	145255363	145255363	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctgaccgcctactggccttcCtgctgcccaggctggacacc	10	18	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	145255363	145255363	C	T	SNP	HEATR7A	ENST00000326134	human	ensembl	69_37n	1	known	silent	c.1060	p.L354	0.991	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR7A	HGNC	ENSG00000179832	73	0	0	62	34	35.42	-	-	-	T	145255363	C	T	145255363	2	4	61	1	0	0	0	0	0	0	0	1	7085	680	24	4		4	HEATR7A	8	145255363	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	3684849	145255363	1108659	58	3033										
HSF1	0	genome.wustl.edu	37	chr8	145537880	145537880	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	acgacctgccggtgctgtttGagctgggagagggctcctac	15	11	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	8	145537880	145537880	G	A	SNP	HSF1	ENST00000528838	human	ensembl	69_37n	1	known	missense	c.1477	p.E493K	1.000	pfam_Vert_HS_TF	pfam_Vert_HS_TF,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122	19	0	0	16	6	27.27	-	-	-	A	145537880	G	A	145537880	3	1	61	1	0	0	0	0	1	0	0	0	7446	1291	45	2	1527	2	HSF1	8	145537880	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	282517	145537880	826142	59	3034										
DMRT1	0	genome.wustl.edu	37	chr9	847104	847104	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctgagtgcagtggcacctctCagccaccgccggccagtgtc	12	16	1	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	9	847104	847104	C	T	SNP	DMRT1	ENST00000382276	human	ensembl	69_37n	1	known	nonsense	c.499	p.Q167*	0.783	pfam_TF_doublesex/Mab3-rel	pfam_DM_DNA-bd,pfam_TF_doublesex/Mab3-rel,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090	30	0	0	32	23	41.82	-	-	-	T	847104	C	T	847104	4	4	61	1	0	0	0	0	0	1	0	0	4621	827	29	2	505	2	DMRT1	9	847104	Nonsense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		847104	140366327	60	3035										
KCNV2	0	genome.wustl.edu	37	chr9	2729631	2729631	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tataccaccatacgcagggaGaggggagaggtgaacttcat	13	8	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	9	2729631	2729631	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	69_37n	1	known	silent	c.1542	p.E514	0.384	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	166	0	0	97	33	25.38	-	-	-	A	2729631	G	A	2729631	2	1	61	1	0	0	0	0	0	0	0	1	8149	933	33	2		2	KCNV2	9	2729631	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	1882527	2729631	138483800	61	3036										
TAF1L	0	genome.wustl.edu	37	chr9	32633918	32633918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gagaattcgactcttcttcaGagatgattccttcttactct	6	10	5	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	9	32633918	32633918	G	C	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.1660	p.L554V	0.998	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	254	0	0	201	87	30.21	-	-	-	C	32633918	G	C	32633918	3	2	61	1	0	0	0	0	1	0	0	0	15615	933	33	2	3824	2	TAF1L	9	32633918	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	29904287	32633918	108579513	62	3037										
FAM188A	0	genome.wustl.edu	37	chr10	15858876	15858876	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgagtctcactgccaacaatCcaaatagggaattttggaga	9	8	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	15858876	15858876	C	T	SNP	FAM188A	ENST00000277632	human	ensembl	69_37n	-1	known	nonsense	c.840	p.W280*	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481	111	0	0	75	23	23.23	-	-	-	T	15858876	C	T	15858876	4	4	61	1	0	0	0	0	0	1	0	0	5555	856	30	2	521	2	FAM188A	10	15858876	Nonsense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		15858876	119675871	63	3038										
NRP1	0	genome.wustl.edu	37	chr10	33502481	33502481	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	caggtctatttggagccactCattgatgtaggaatgaggtg	13	6	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	33502481	33502481	C	T	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	missense	c.1447	p.E483K	0.998	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	229	0	0	147	50	25.25	-	-	-	T	33502481	C	T	33502481	3	4	61	1	0	0	0	0	1	0	0	0	10733	835	29	2	1371	2	NRP1	10	33502481	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	17643605	33502481	102032266	64	3039										
C10orf12	0	genome.wustl.edu	37	chr10	98742128	98742128	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gaaggtggctccacagtctcAgctcccacagcaagtgggat	12	12	1	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	98742128	98742128	A	C	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	silent	c.981	p.S327	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	73	0	0	56	28	33.33	-	-	-	C	98742128	A	C	98742128	2	2	61	1	0	0	0	0	0	0	0	1	1599	175	7	5		5	C10orf12	10	98742128	Silent	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09	65239647	98742128	36792619	65	3040										
HPS1	0	genome.wustl.edu	37	chr10	100191027	100191027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gcacagctcacagagctgggGgtgaatcagtcgctccaggg	15	11	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	100191027	100191027	G	A	SNP	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	missense	c.529	p.P177S	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	34	0	0	18	18	50	-	-	-	A	100191027	G	A	100191027	3	1	61	1	0	0	0	0	1	0	0	0	7390	1232	43	4	1667	4	HPS1	10	100191027	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	1448899	100191027	35343720	66	3041										
SLK	0	genome.wustl.edu	37	chr10	105779531	105779531	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gttacaatcaaagacttattGaggaattgaaaaacagacag	8	5	1	4			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	105779531	105779531	G	A	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	missense	c.3172	p.E1058K	1.000	pfam_PKK,superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	48	0	0	42	6	12.5	-	-	-	A	105779531	G	A	105779531	3	1	61	1	0	0	0	0	1	0	0	0	14837	1291	45	2	3234	2	SLK	10	105779531	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	5588504	105779531	29755216	67	3042										
SLK	0	genome.wustl.edu	37	chr10	105779657	105779657	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	actcaacagccacaccagatCaggaccgtgataaaattaaa	6	11	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	10	105779657	105779657	C	G	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	missense	c.3298	p.Q1100E	1.000	pfam_PKK,superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	75	0	0	49	16	24.62	-	-	-	G	105779657	C	G	105779657	3	3	61	1	0	0	0	0	1	0	0	0	14837	827	29	2	3360	2	SLK	10	105779657	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	126	105779657	29755090	68	3043										
SMPD1	0	genome.wustl.edu	37	chr11	6412017	6412017	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gctccggcagaggctcacccTctttctccccaaggccatcc	8	19	3	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	11	6412017	6412017	T	G	SNP	SMPD1	ENST00000342245	human	ensembl	69_37n	1	known	silent	c.189	p.P63	0.434	pirsf_Sphingomy_PDE	pirsf_Sphingomy_PDE,pfam_Metallo_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311	62	0	0	50	28	35.9	-	-	-	G	6412017	T	G	6412017	2	3	61	1	0	0	0	0	0	0	0	1	14893	1538	54	5		5	SMPD1	11	6412017	Silent	SNP	T	TCGA-A2-A0SY-01A-31D-A099-09		6412017	128594499	69	3044										
ACCSL	0	genome.wustl.edu	37	chr11	44069730	44069730	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gagcacttcgtgcagctgacGagcagacagggcctgtcgct	14	12	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	11	44069730	44069730	G	A	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	silent	c.144	p.T48	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	33	0	0	36	10	21.74	-	-	-	A	44069730	G	A	44069730	2	1	61	1	0	0	0	0	0	0	0	1	134	1045	37	1		1	ACCSL	11	44069730	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	37657713	44069730	90936786	70	3045										
RNF121	0	genome.wustl.edu	37	chr11	71706538	71706538	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ggctggtgcatcgtgggaaaGaagcaaacgtgtccctactg	14	9	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	11	71706538	71706538	G	C	SNP	RNF121	ENST00000361756	human	ensembl	69_37n	1	known	missense	c.804	p.K268N	1.000	smart_Znf_RING,pfscan_Znf_RING	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF121	HGNC	ENSG00000137522	240	0	0	144	79	35.43	-	-	-	C	71706538	G	C	71706538	3	2	61	1	0	0	0	0	1	0	0	0	13517	933	33	2	834	2	RNF121	11	71706538	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	27636808	71706538	63299978	71	3046										
NOX4	0	genome.wustl.edu	37	chr11	89135609	89135609	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaggttcatgaaaatgttctGagaaatactctggtaaggaa	10	4	3	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	11	89135609	89135609	G	C	SNP	NOX4	ENST00000413594	human	ensembl	69_37n	-1	known	nonsense	c.794	p.S265*	0.158	NULL	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	152	0	0	106	49	31.41	-	-	-	C	89135609	G	C	89135609	4	2	61	1	0	0	0	0	0	1	0	0	10630	1294	45	2	1045	2	NOX4	11	89135609	Nonsense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	17429071	89135609	45870907	72	3047										
CACNA1C	0	genome.wustl.edu	37	chr12	2622018	2622018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	agaaggccaaggcccggggaGatttccagaagctgcgggag	17	9	0	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	2622018	2622018	G	C	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.1258	p.D420H	1.000	prints_VDCCAlpha1,prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	79	0	0	42	9	17.65	-	-	-	C	2622018	G	C	2622018	3	2	61	1	0	0	0	0	1	0	0	0	2565	942	33	2	1400	2	CACNA1C	12	2622018	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		2622018	131229877	73	3048										
FAM60A	0	genome.wustl.edu	37	chr12	31451107	31451107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tacagcagccctctatacttCggtacatctttggcttgtga	8	11	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	31451107	31451107	C	T	SNP	FAM60A	ENST00000337682	human	ensembl	69_37n	-1	known	missense	c.32	p.R11Q	1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146	97	0	0	60	34	36.17	-	-	-	T	31451107	C	T	31451107	3	4	61	1	0	0	0	0	1	0	0	0	5640	884	31	1	653	1	FAM60A	12	31451107	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	28829089	31451107	102400788	74	3049										
KIF5A	0	genome.wustl.edu	37	chr12	57969055	57969055	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgccagctcctcatctctcaGgtgagtgcctaagtttgaga	10	11	3	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	57969055	57969055	G	A	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	silent	c.1905	p.Q635	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	63	0	0	56	27	32.53	-	-	-	A	57969055	G	A	57969055	2	1	61	1	0	0	0	0	0	0	0	1	8357	1014	35	4		4	KIF5A	12	57969055	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	26517948	57969055	75882840	75	3050										
LRRIQ1	0	genome.wustl.edu	37	chr12	85449664	85449664	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aaaggagagaaaaagaatatGaagaaaaaaagaatattgtg	10	0	0	5			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	85449664	85449664	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.1093	p.E365K	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	35	0	0	29	13	30.95	-	-	-	A	85449664	G	A	85449664	3	1	61	1	0	0	0	0	1	0	0	0	9095	1291	45	2	1119	2	LRRIQ1	12	85449664	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	27480609	85449664	48402231	76	3051										
ATP2B1	0	genome.wustl.edu	37	chr12	90028579	90028579	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tagaagtaagggatccttatCtaaagactttttaacatgat	7	5	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	90028579	90028579	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.763	p.D255N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	64	0	0	44	19	30.16	-	-	-	T	90028579	C	T	90028579	3	4	61	1	0	0	0	0	1	0	0	0	1143	913	32	2	3125	2	ATP2B1	12	90028579	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	4578915	90028579	43823316	77	3052										
TCP11L2	0	genome.wustl.edu	37	chr12	106734763	106734763	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gaagaggaggacaatcctatCtggtccttgattggtgagtc	13	7	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	106734763	106734763	C	G	SNP	TCP11L2	ENST00000299045	human	ensembl	69_37n	1	known	missense	c.1302	p.I434M	0.856	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	166	0	0	144	58	28.71	-	-	-	G	106734763	C	G	106734763	3	3	61	1	0	0	0	0	1	0	0	0	15810	903	32	2	1332	2	TCP11L2	12	106734763	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	16706184	106734763	27117132	78	3053										
TPCN1	0	genome.wustl.edu	37	chr12	113731077	113731077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cctctgctcttccttagcaaCattccatggtgtttctggga	8	12	3	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	113731077	113731077	C	T	SNP	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	missense	c.2473	p.H825Y	0.026	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	83	0	0	63	10	13.7	-	-	-	T	113731077	C	T	113731077	3	4	61	1	0	0	0	0	1	0	0	0	16491	478	17	4	2579	4	TPCN1	12	113731077	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	6996314	113731077	20120818	79	3054										
ATP6V0A2	0	genome.wustl.edu	37	chr12	124218479	124218479	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttcattctttgtagggggaaGtcataaaatggtatgtcttt	10	4	4	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	12	124218479	124218479	G	C	SNP	ATP6V0A2	ENST00000330342	human	ensembl	69_37n	1	known	missense	c.655	p.V219L	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344	248	1	0.4	210	66	23.91	-	-	-	C	124218479	G	C	124218479	3	2	61	1	0	0	0	0	1	0	0	0	1173	1029	36	4	681	4	ATP6V0A2	12	124218479	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	10487402	124218479	9633416	80	3055										
LRCH1	0	genome.wustl.edu	37	chr13	47286664	47286664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccttccaacaccacagattaGagagaactcccctgcagtct	6	15	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	13	47286664	47286664	G	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.1586	p.R529T	0.114	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	138	0	0	75	38	33.63	-	-	-	C	47286664	G	C	47286664	3	2	61	1	0	0	0	0	1	0	0	0	8998	942	33	2	1644	2	LRCH1	13	47286664	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		47286664	67883214	81	3056										
TGDS	0	genome.wustl.edu	37	chr13	95232153	95232153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	agaagtaaaatttaccttttCtggatattgatgtggtccat	8	5	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	13	95232153	95232153	C	T	SNP	TGDS	ENST00000261296	human	ensembl	69_37n	-1	known	missense	c.610	p.E204K	1.000	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	-	no_errors	TGDS	HGNC	ENSG00000088451	154	0	0	138	60	30.3	-	-	-	T	95232153	C	T	95232153	3	4	61	1	0	0	0	0	1	0	0	0	15909	922	32	2	466	2	TGDS	13	95232153	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	47945489	95232153	19937725	82	3057										
FOXA1	0	genome.wustl.edu	37	chr14	38061250	38061250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	catgttgccggagtccgggtGcagcgtccagtaggagccct	15	12	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	14	38061250	38061250	G	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.739	p.H247Y	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	54	0	0	19	10	34.48	-	-	-	A	38061250	G	A	38061250	3	1	61	1	0	0	0	0	1	0	0	0	6035	1319	46	4	683	4	FOXA1	14	38061250	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		38061250	69288290	83	3058										
TOMM20L	0	genome.wustl.edu	37	chr14	58875253	58875253	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tatgtattcaccagcaatttGaggcagacatgaatgaacag	9	7	1	4			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	14	58875253	58875253	G	C	SNP	TOMM20L	ENST00000360945	human	ensembl	69_37n	1	known	missense	c.412	p.E138Q	1.000	superfamily_Tom20_dom,pirsf_MAS20_rcpt-related,prints_MAS20_rcpt_metazoan	pfam_MAS20_rcpt-related,superfamily_Tom20_dom,pirsf_MAS20_rcpt-related,prints_MAS20_rcpt_metazoan,prints_MAS20_rcpt-related	-	no_errors	TOMM20L	HGNC	ENSG00000196860	204	0	0	162	62	27.68	-	-	-	C	58875253	G	C	58875253	3	2	61	1	0	0	0	0	1	0	0	0	16450	1291	45	2	430	2	TOMM20L	14	58875253	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	20814003	58875253	48474287	84	3059										
OR4F15	0	genome.wustl.edu	37	chr15	102358587	102358587	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tatttcctcctggctaacctCtcaatcattgatatggcatt	5	11	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	15	102358587	102358587	C	G	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	1	known	silent	c.198	p.L66	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	209	0	0	236	35	12.92	-	-	-	G	102358587	C	G	102358587	2	3	61	1	0	0	0	0	0	0	0	1	11134	900	32	2		2	OR4F15	15	102358587	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		102358587	172805	85	3060										
CDH1	0	genome.wustl.edu	37	chr16	68772203	68772204	+	Frame_Shift_Ins	INS	-	-	CA													0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctttcccccaccccaggtctINScctcttggctctgccaggag							TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	16	68772203	68772204	-	CA	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.52_53	p.S19fs	0.327:0.321	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	50	0	0	12	9	42.86	-	-	-	CA	68772204	-	CA	68772203	7	5	61	1	0	1	1	0	0	0	0	0	3124	1551	54	0	58	0	CDH1	16	68772203	Frame_Shift_Ins	INS	-	TCGA-A2-A0SY-01A-31D-A099-09		68772203	21582550	86	3061										
GPS2	0	genome.wustl.edu	37	chr17	7217617	7217617	+	Frame_Shift_Del	DEL	C	C	-													0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	actctgatcccacctctgttCctttcgcctccgtttttctt							TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	7217617	7217617	C	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_del	c.310	p.E104fs	1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	511	0	0	169	120	41.24	-	-	-	-	7217617	C	-	7217617	7	5	61	1	0	1	0	1	0	0	0	0	6784	864	30	0	705	0	GPS2	17	7217617	Frame_Shift_Del	DEL	C	TCGA-A2-A0SY-01A-31D-A099-09		7217617	73977593	87	3062										
FLII	0	genome.wustl.edu	37	chr17	18157406	18157406	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gcctgacctgcgaggttgctCagaccctccaggctggtggg	15	13	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	18157406	18157406	C	T	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	silent	c.666	p.L222	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	34	0	0	39	40	50.63	-	-	-	T	18157406	C	T	18157406	2	4	61	1	0	0	0	0	0	0	0	1	5971	813	29	2		2	FLII	17	18157406	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	10939789	18157406	63037804	88	3063										
PLXDC1	0	genome.wustl.edu	37	chr17	37265502	37265502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tggcgactggggcactcaccGaagcctgccggtgggtgttg	17	11	1	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	37265502	37265502	G	A	SNP	PLXDC1	ENST00000315392	human	ensembl	69_37n	-1	known	missense	c.398	p.S133L	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381	98	0	0	293	45	13.31	-	-	-	A	37265502	G	A	37265502	3	1	61	1	0	0	0	0	1	0	0	0	12191	1072	37	1	1152	1	PLXDC1	17	37265502	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	19108096	37265502	43929708	89	3064										
FKBP10	0	genome.wustl.edu	37	chr17	39977965	39977965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tggagctggtgtcccgggagGatgggctgcccacaggctac	17	11	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	39977965	39977965	G	A	SNP	FKBP10	ENST00000321562	human	ensembl	69_37n	1	known	missense	c.1459	p.D487N	1.000	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756	213	0	0	563	74	11.62	-	-	-	A	39977965	G	A	39977965	3	1	61	1	0	0	0	0	1	0	0	0	5948	1174	41	2	1493	2	FKBP10	17	39977965	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	2712463	39977965	41217245	90	3065										
KLHL11	0	genome.wustl.edu	37	chr17	40021290	40021290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ggcggcagccagtaccgagcGgtgggcccggaactcgcggc	18	14	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	40021290	40021290	G	A	SNP	KLHL11	ENST00000319121	human	ensembl	69_37n	-1	known	missense	c.334	p.R112C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL11	HGNC	ENSG00000178502	10	0	0	43	30	40.54	-	-	-	A	40021290	G	A	40021290	3	1	61	1	0	0	0	0	1	0	0	0	8420	1116	39	1	1800	1	KLHL11	17	40021290	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	43325	40021290	41173920	91	3066										
STAT5B	0	genome.wustl.edu	37	chr17	40370189	40370189	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttgcgggtgttctcgttcttGagcagagacttggcctgctg	14	9	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	40370189	40370189	G	C	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	silent	c.1149	p.L383	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	179	0	0	47	50	51.55	-	-	-	C	40370189	G	C	40370189	2	2	61	1	0	0	0	0	0	0	0	1	15360	1277	45	2		2	STAT5B	17	40370189	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	348899	40370189	40825021	92	3067										
NPEPPS	0	genome.wustl.edu	37	chr17	45664628	45664628	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gcttattgatccaaaaaattCctgttcttcatcccgccagt	5	12	2	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	45664628	45664628	C	G	SNP	NPEPPS	ENST00000322157	human	ensembl	69_37n	1	known	missense	c.1013	p.S338C	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279	238	0	0	88	71	44.38	-	-	-	G	45664628	C	G	45664628	3	3	61	1	0	0	0	0	1	0	0	0	10647	855	30	2	1047	2	NPEPPS	17	45664628	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	5294439	45664628	35530582	93	3068										
TRIM25	0	genome.wustl.edu	37	chr17	54990828	54990828	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	accaggcagatgtggcagatGcactcgctgtgctcggggca	15	11	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	54990828	54990828	G	A	SNP	TRIM25	ENST00000316881	human	ensembl	69_37n	-1	known	silent	c.522	p.C174	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM25	HGNC	ENSG00000121060	18	0	0	22	31	58.49	-	-	-	A	54990828	G	A	54990828	2	1	61	1	0	0	0	0	0	0	0	1	16595	1311	46	4		4	TRIM25	17	54990828	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	9326200	54990828	26204382	94	3069										
CACNG4	0	genome.wustl.edu	37	chr17	65026894	65026894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ctcaaggtccaccgaggcctCgccctccagggacgtgtcgc	12	17	1	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	65026894	65026894	C	T	SNP	CACNG4	ENST00000262138	human	ensembl	69_37n	1	known	missense	c.758	p.S253L	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461	37	0	0	43	11	20.37	-	-	-	T	65026894	C	T	65026894	3	4	61	1	0	0	0	0	1	0	0	0	2584	893	31	1	772	1	CACNG4	17	65026894	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	10036066	65026894	16168316	95	3070										
RAB37	0	genome.wustl.edu	37	chr17	72739463	72739463	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgacatcaccaacaaatcttCtttcgacaacatcagggtag	6	11	4	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	17	72739463	72739463	C	G	SNP	RAB37	ENST00000392614	human	ensembl	69_37n	1	known	missense	c.365	p.S122C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794	243	1	0.41	148	78	34.51	-	-	-	G	72739463	C	G	72739463	3	3	61	1	0	0	0	0	1	0	0	0	13010	913	32	2	671	2	RAB37	17	72739463	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	7712569	72739463	8455747	96	3071										
C3	0	genome.wustl.edu	37	chr19	6712586	6712586	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tgaagtggatctggtagggaGaggtcacgatggggatcccg	18	6	2	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	6712586	6712586	G	A	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.1052	p.S351F	1.000	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	325	0	0	196	78	28.47	-	-	-	A	6712586	G	A	6712586	3	1	61	1	0	0	0	0	1	0	0	0	2224	942	33	2	4067	2	C3	19	6712586	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		6712586	52416397	97	3072										
EMR2	0	genome.wustl.edu	37	chr19	14884796	14884796	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	atgatctcagaaaaagagctGaaccctggattgcagcgaca	10	9	1	4			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	14884796	14884796	G	T	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.153	p.F51L	0.444	smart_EGF-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	192	0	0	123	56	31.28	-	-	-	T	14884796	G	T	14884796	3	4	61	1	0	0	0	0	1	0	0	0	5142	1281	45	2	2390	2	EMR2	19	14884796	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	8172210	14884796	44244187	98	3073										
ZNF567	0	genome.wustl.edu	37	chr19	37211247	37211247	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tttgtaatgaatgtgggaagTcctttcgccagaaagcaacc	10	8	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	37211247	37211247	T	A	SNP	ZNF567	ENST00000536254	human	ensembl	69_37n	1	known	missense	c.1621	p.S541T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042	77	0	0	59	13	18.06	-	-	-	A	37211247	T	A	37211247	3	1	61	1	0	0	0	0	1	0	0	0	18094	1667	58	5	1538	5	ZNF567	19	37211247	Missense_Mutation	SNP	T	TCGA-A2-A0SY-01A-31D-A099-09	22326451	37211247	21917736	99	3074										
HRC	0	genome.wustl.edu	37	chr19	49657744	49657744	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	atcatcatcatcatcatcatCatcatcatcgtcatcttctt	1	13	12	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	49657744	49657744	C	T	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.751	p.D251N	0.685	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	165	0	0	126	61	32.45	-	-	-	T	49657744	C	T	49657744	3	4	61	1	0	0	0	0	1	0	0	0	7403	826	29	2	1372	2	HRC	19	49657744	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	12446497	49657744	9471239	100	3075										
HRC	0	genome.wustl.edu	37	chr19	49657822	49657822	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtgtccatctgagacatcctCatcctcttcactcccatggc	6	16	4	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	49657822	49657822	C	A	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	nonsense	c.673	p.E225*	0.972	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	126	0	0	123	35	22.15	-	-	-	A	49657822	C	A	49657822	4	1	61	1	0	0	0	0	0	1	0	0	7403	835	29	2	1450	2	HRC	19	49657822	Nonsense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	78	49657822	9471161	101	3076										
NAT14	0	genome.wustl.edu	37	chr19	55998266	55998266	+	Frame_Shift_Del	DEL	G	G	-													0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ggctgtggctaccaggccgaGgggggctggggctgcctggg							TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	19	55998266	55998266	G	-	DEL	NAT14	ENST00000205194	human	ensembl	69_37n	1	known	frame_shift_del	c.564	p.G190fs	0.991	pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT14	HGNC	ENSG00000090971	16	0	0	4	2	33.33	-	-	-	-	55998266	G	-	55998266	7	5	61	1	0	1	0	1	0	0	0	0	10247	991	35	0	570	0	NAT14	19	55998266	Frame_Shift_Del	DEL	G	TCGA-A2-A0SY-01A-31D-A099-09	6340444	55998266	3130717	102	3077										
CTCFL	0	genome.wustl.edu	37	chr20	56094287	56094287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	gtgggtgttaacatggttccGcagcagagtgaccgtacgga	15	8	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	20	56094287	56094287	G	A	SNP	CTCFL	ENST00000423479	human	ensembl	69_37n	-1	known	missense	c.901	p.R301W	0.969	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	134	0	0	93	25	21.19	-	-	-	A	56094287	G	A	56094287	3	1	61	1	0	0	0	0	1	0	0	0	4033	1086	38	1	1122	1	CTCFL	20	56094287	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		56094287	6931233	103	3078										
OPRL1	0	genome.wustl.edu	37	chr20	62730133	62730133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ggcctgcaagacctctgagaCggtaccgcggcccgcatgac	13	15	1	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	20	62730133	62730133	C	T	SNP	OPRL1	ENST00000336866	human	ensembl	69_37n	1	known	missense	c.1094	p.T365M	0.000	prints_X_opioid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_X_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPRL1	HGNC	ENSG00000125510	40	0	0	19	9	32.14	-	-	-	T	62730133	C	T	62730133	3	4	61	1	0	0	0	0	1	0	0	0	10959	536	19	1	1104	1	OPRL1	20	62730133	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	6635846	62730133	295387	104	3079										
THAP7	0	genome.wustl.edu	37	chr22	21354267	21354267	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ccgcttctcccgtgcccgctCctgctgcagcttggtcagtc	10	18	2	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	22	21354267	21354267	C	G	SNP	THAP7	ENST00000215742	human	ensembl	69_37n	-1	known	missense	c.832	p.E278Q	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP7	HGNC	ENSG00000184436	15	0	0	20	9	31.03	-	-	-	G	21354267	C	G	21354267	3	3	61	1	0	0	0	0	1	0	0	0	15944	864	30	2	101	2	THAP7	22	21354267	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09		21354267	29950299	105	3080										
IL3RA	0	genome.wustl.edu	37	chrX	1497591	1497591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cgcaaacacacgtgcctggcGgacgtcgctgctgatcgcgc	13	15	0	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	1497591	1497591	G	A	SNP	IL3RA	ENST00000331035	human	ensembl	69_37n	1	known	missense	c.914	p.R305Q	0.006	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291	114	0	0	117	59	33.52	-	-	-	A	1497591	G	A	1497591	3	1	61	1	0	0	0	0	1	0	0	0	7749	1116	39	1	948	1	IL3RA	23	1497591	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09		1497591	153772969	106	3081										
NHS	0	genome.wustl.edu	37	chrX	17746433	17746433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	agacccaaggaaatgtggatGaggcttcattgaaaggtcag	13	6	2	3			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	17746433	17746433	G	A	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.4144	p.E1382K	0.990	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	60	0	0	48	19	28.36	-	-	-	A	17746433	G	A	17746433	3	1	61	1	0	0	0	0	1	0	0	0	10483	1291	45	2	4271	2	NHS	23	17746433	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	16248842	17746433	137524127	107	3082										
TAB3	0	genome.wustl.edu	37	chrX	30872359	30872359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	ttctggtgctgcagagcgctCttcttggtccactaaattta	9	10	3	1			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	30872359	30872359	C	G	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475Q	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	186	0	0	124	70	36.08	-	-	-	G	30872359	C	G	30872359	3	3	61	1	0	0	0	0	1	0	0	0	15589	922	32	2	739	2	TAB3	23	30872359	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	13125926	30872359	124398201	108	3083										
DDX3X	0	genome.wustl.edu	37	chrX	41202029	41202029	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	aacactgggattaattttgaGaaatacgatgacattccagt	8	6	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	41202029	41202029	G	A	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	silent	c.483	p.E161	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	207	0	0	119	60	33.52	-	-	-	A	41202029	G	A	41202029	2	1	61	1	0	0	0	0	0	0	0	1	4389	933	33	2		2	DDX3X	23	41202029	Silent	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	10329670	41202029	114068531	109	3084										
PIM2	0	genome.wustl.edu	37	chrX	48771429	48771429	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tagggtagcaaggaccaggcCaaaggggcagggcctccttt	15	10	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	48771429	48771429	C	G	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	missense	c.915	p.L305F	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	99	0	0	76	29	27.62	-	-	-	G	48771429	C	G	48771429	3	3	61	1	0	0	0	0	1	0	0	0	12002	593	21	4	24	4	PIM2	23	48771429	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	7569400	48771429	106499131	110	3085										
FAM123B	0	genome.wustl.edu	37	chrX	63409936	63409936	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	atgccatgggtgatgcccacAggcttggcctgtggtagagg	16	9	0	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	63409936	63409936	A	G	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	silent	c.3231	p.P1077	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	34	0	0	33	14	29.79	-	-	-	G	63409936	A	G	63409936	2	3	61	1	0	0	0	0	0	0	0	1	5463	175	7	5		5	FAM123B	23	63409936	Silent	SNP	A	TCGA-A2-A0SY-01A-31D-A099-09	14638507	63409936	91860624	111	3086										
OTUD6A	0	genome.wustl.edu	37	chrX	69283015	69283015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	cgacaacatcgtgcgcaccaCggcatggggaggccagctgg	15	13	0	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	69283015	69283015	C	T	SNP	OTUD6A	ENST00000338352	human	ensembl	69_37n	1	known	missense	c.641	p.T214M	0.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401	31	0	0	25	8	24.24	-	-	-	T	69283015	C	T	69283015	3	4	61	1	0	0	0	0	1	0	0	0	11389	536	19	1	643	1	OTUD6A	23	69283015	Missense_Mutation	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	5873079	69283015	85987545	112	3087										
LRCH2	0	genome.wustl.edu	37	chrX	114391183	114391183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	acctcttttcacattccacaGtttgttttggcttgtttctc	5	11	3	0			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	114391183	114391183	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.1511	p.T504I	0.406	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	92	0	0	67	32	32.32	-	-	-	A	114391183	G	A	114391183	3	1	61	1	0	0	0	0	1	0	0	0	8999	1029	36	4	826	4	LRCH2	23	114391183	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	45108168	114391183	40879377	113	3088										
THOC2	0	genome.wustl.edu	37	chrX	122820419	122820419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	tggtaaaacttgaatttgaaCccaagaatatgacacagtgt	8	6	0	4			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	122820419	122820419	C	T	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	silent	c.747	p.G249	0.652	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	155	0	0	134	48	26.37	-	-	-	T	122820419	C	T	122820419	2	4	61	1	0	0	0	0	0	0	0	1	15960	494	18	4		4	THOC2	23	122820419	Silent	SNP	C	TCGA-A2-A0SY-01A-31D-A099-09	8429236	122820419	32450141	114	3089										
SMARCA1	0	genome.wustl.edu	37	chrX	128631942	128631942	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.51304347826087	59	1.20449477431391e-21	3.97272459499264	5.41630662020906	2.91581632653061	0.150003143067097	0.652013661864982	44	accatcaaacagatatggatGattacaacactttcgaagct	6	9	1	2			TCGA-A2-A0SY-01A-31D-A099-09	TCGA-A2-A0SY-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efaa9c0b-c14b-4141-b48c-cc2c6b89ab73	95699bf2-296b-4b90-8328-3e423c69e282	X	128631942	128631942	G	C	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.1384	p.H462D	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	115	0	0	101	46	31.29	-	-	-	C	128631942	G	C	128631942	3	2	61	1	0	0	0	0	1	0	0	0	14857	1290	45	2	1836	2	SMARCA1	23	128631942	Missense_Mutation	SNP	G	TCGA-A2-A0SY-01A-31D-A099-09	5811523	128631942	26638618	115	3090										
UBR4	0	genome.wustl.edu	37	chr1	19464664	19464664	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agcatcgccataagcactgcTccggccagatactagaggga	11	12	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	19464664	19464664	T	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.8743	p.S2915R	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	26	0	0	29	25	46.3	-	-	-	G	19464664	T	G	19464664	3	3	62	1	0	0	0	0	1	0	0	0	17001	1551	54	5	6996	5	UBR4	1	19464664	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09		19464664	229785957	1	3091										
CSMD2	0	genome.wustl.edu	37	chr1	34191097	34191097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cgctgagtaagtccgcccatCgcgtacttccagggtgtcat	11	13	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	34191097	34191097	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.2548	p.D850N	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	32	0	0	126	82	39.42	-	-	-	T	34191097	C	T	34191097	3	4	62	1	0	0	0	0	1	0	0	0	3977	884	31	1	8247	1	CSMD2	1	34191097	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	14726433	34191097	215059524	2	3092										
DNALI1	0	genome.wustl.edu	37	chr1	38030643	38030643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcaggcccaactggaaggcaTtattgcaccaaagaagtgat	10	9	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	38030643	38030643	T	C	SNP	DNALI1	ENST00000296218	human	ensembl	69_37n	1	known	missense	c.824	p.I275T	1.000	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	DNALI1	HGNC	ENSG00000163879	216	0	0	58	33	36.26	-	-	-	C	38030643	T	C	38030643	3	2	62	1	0	0	0	0	1	0	0	0	4694	1493	52	5	846	5	DNALI1	1	38030643	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	3839546	38030643	211219978	3	3093										
RSPO1	0	genome.wustl.edu	37	chr1	38078565	38078565	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctgttggcattctcccgccgGccctggcctcccttcctcct	8	20	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	38078565	38078565	G	T	SNP	RSPO1	ENST00000356545	human	ensembl	69_37n	-1	known	silent	c.654	p.G218	0.995	NULL	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO1	HGNC	ENSG00000169218	15	0	0	73	51	40.48	-	-	-	T	38078565	G	T	38078565	2	4	62	1	0	0	0	0	0	0	0	1	13795	1190	42	4		4	RSPO1	1	38078565	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	47922	38078565	211172056	4	3094										
ABCA4	0	genome.wustl.edu	37	chr1	94543428	94543428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	caaaaagtcttttactgttgGgttccccagggtatccttgg	10	9	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	94543428	94543428	G	T	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.1372	p.P458T	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	34	0	0	33	27	45	-	-	-	T	94543428	G	T	94543428	3	4	62	1	0	0	0	0	1	0	0	0	34	1232	43	4	5609	4	ABCA4	1	94543428	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	56464863	94543428	154707193	5	3095										
AGL	0	genome.wustl.edu	37	chr1	100330007	100330007	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctaggtcatgctactcccttGccaatcagttagaattaaat	6	10	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	100330007	100330007	G	C	SNP	AGL	ENST00000294724	human	ensembl	69_37n	1	known	missense	c.526	p.A176P	1.000	superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	245	0	0	51	35	40.7	-	-	-	C	100330007	G	C	100330007	3	2	62	1	0	0	0	0	1	0	0	0	384	1319	46	4	609	4	AGL	1	100330007	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	5786579	100330007	148920614	6	3096										
NTNG1	0	genome.wustl.edu	37	chr1	107963749	107963749	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	acagtttcttctgttcaagtTgcaaaccacaagagaggtag	9	8	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	107963749	107963749	T	C	SNP	NTNG1	ENST00000370066	human	ensembl	69_37n	1	known	silent	c.1197	p.V399	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	241	0	0	83	29	25.89	-	-	-	C	107963749	T	C	107963749	2	2	62	1	0	0	0	0	0	0	0	1	10777	1799	63	5		5	NTNG1	1	107963749	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	7633742	107963749	141286872	7	3097										
CELSR2	0	genome.wustl.edu	37	chr1	109815559	109815559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aggaggaagaagaggaggagGaagaggaggccgccttccct	18	7	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	109815559	109815559	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.8248	p.E2750K	0.993	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	13	0	0	78	30	27.78	-	-	-	A	109815559	G	A	109815559	3	1	62	1	0	0	0	0	1	0	0	0	3251	1175	41	2	8370	2	CELSR2	1	109815559	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1851810	109815559	139435062	8	3098										
FCGR1B	0	genome.wustl.edu	37	chr1	120927202	120927202	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctgttcttctttttgttcctGacatttcagctcttcttcta	4	11	6	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	120927202	120927202	G	A	SNP	FCGR1B	ENST00000369384	human	ensembl	69_37n	-1	known	nonsense	c.778	p.Q260*	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1B	HGNC	ENSG00000198019	109	0	0	111	23	17.16	-	-	-	A	120927202	G	A	120927202	4	1	62	1	0	0	0	0	0	1	0	0	5826	1299	45	2	68	2	FCGR1B	1	120927202	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	11111643	120927202	128323419	9	3099										
TDRKH	0	genome.wustl.edu	37	chr1	151747553	151747553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tagctcaccatgtccttcaaCatgtctgggacagctctgtt	8	12	4	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	151747553	151747553	C	G	SNP	TDRKH	ENST00000368822	human	ensembl	69_37n	-1	known	missense	c.1524	p.M508I	0.002	NULL	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134	135	0	0	120	31	20.53	-	-	-	G	151747553	C	G	151747553	3	3	62	1	0	0	0	0	1	0	0	0	15832	478	17	4	173	4	TDRKH	1	151747553	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	30820351	151747553	97503068	10	3100										
PGLYRP4	0	genome.wustl.edu	37	chr1	153312921	153312921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctggatgtcccggaccagcaGgcggcactcatcagaaatgt	12	12	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	153312921	153312921	G	A	SNP	PGLYRP4	ENST00000359650	human	ensembl	69_37n	-1	known	silent	c.760	p.L254	0.021	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP4	HGNC	ENSG00000163218	23	0	0	103	35	25.36	-	-	-	A	153312921	G	A	153312921	2	1	62	1	0	0	0	0	0	0	0	1	11870	991	35	4		4	PGLYRP4	1	153312921	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1565368	153312921	95937700	11	3101										
ATP8B2	0	genome.wustl.edu	37	chr1	154300293	154300293	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gggatggataccttgagagcTgttccccttttttcaatatc	9	9	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	154300293	154300293	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	silent	c.18	p.A6	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	136	0	0	239	50	17.3	-	-	-	G	154300293	T	G	154300293	2	3	62	1	0	0	0	0	0	0	0	1	1199	1567	55	5		5	ATP8B2	1	154300293	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	987372	154300293	94950328	12	3102										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	9	0	0	62	18	22.22	-	-	-	C	154842243	A	C	154842243	2	2	62	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	541950	154842243	94408378	13	3103	24	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	9	0	0	63	18	21.43	-	-	-	T	154842244	A	T	154842244	3	4	62	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	1	154842244	94408377	14	3104	24	2								
UCHL5	0	genome.wustl.edu	37	chr1	192998533	192998533	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tttacctggcgaaactgttgTgtacttgtcgaatcacatct	8	9	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	192998533	192998533	T	C	SNP	UCHL5	ENST00000367451	human	ensembl	69_37n	-1	known	missense	c.419	p.H140R	1.000	pfam_Peptidase_C12,pirsf_Ubiquitinyl_hydrolase_UCH37	pfam_Peptidase_C12,pirsf_Ubiquitinyl_hydrolase_UCH37,prints_Peptidase_C12	-	no_errors	UCHL5	HGNC	ENSG00000116750	256	0	0	186	29	13.49	-	-	-	C	192998533	T	C	192998533	3	2	62	1	0	0	0	0	1	0	0	0	17019	1696	59	5	598	5	UCHL5	1	192998533	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	38156289	192998533	56252088	15	3105										
LMOD1	0	genome.wustl.edu	37	chr1	201869266	201869266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggccactgggcgtctgtttcTcgggtgttttggtcttgctg	15	9	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	201869266	201869266	T	C	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	missense	c.875	p.E292G	0.001	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	113	0	0	198	50	20.16	-	-	-	C	201869266	T	C	201869266	3	2	62	1	0	0	0	0	1	0	0	0	8912	1551	54	5	935	5	LMOD1	1	201869266	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	8870733	201869266	47381355	16	3106										
C1orf65	0	genome.wustl.edu	37	chr1	223567939	223567939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcagagcaccgaaaacagtgCcaggtgcggcgcctgcggga	16	12	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	223567939	223567939	C	G	SNP	C1orf65	ENST00000366875	human	ensembl	69_37n	1	known	missense	c.1122	p.C374W	0.424	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	9	0	0	64	11	14.67	-	-	-	G	223567939	C	G	223567939	3	3	62	1	0	0	0	0	1	0	0	0	2075	747	26	4	1124	4	C1orf65	1	223567939	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	21698673	223567939	25682682	17	3107										
PCNXL2	0	genome.wustl.edu	37	chr1	233395012	233395012	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccagcatgtgtgcttgagacGcaggtaagctttccactttg	11	10	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	233395012	233395012	G	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.596	p.A199G	0.050	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	41	0	0	179	31	14.62	-	-	-	C	233395012	G	C	233395012	3	2	62	1	0	0	0	0	1	0	0	0	11665	1087	38	3	5937	3	PCNXL2	1	233395012	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	9827073	233395012	15855609	18	3108										
HEATR1	0	genome.wustl.edu	37	chr1	236739603	236739603	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	acacaactaagtaagtttttCaaagtttcagacaacttctg	5	8	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	236739603	236739603	C	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.3000	p.L1000F	0.824	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	259	0	0	146	23	13.61	-	-	-	G	236739603	C	G	236739603	3	3	62	1	0	0	0	0	1	0	0	0	7078	825	29	2	3530	2	HEATR1	1	236739603	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	3344591	236739603	12511018	19	3109										
FMN2	0	genome.wustl.edu	37	chr1	240555839	240555839	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gaccaagaggcagaggaaaaTtcactgacagagactcataa	10	8	2	4			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	240555839	240555839	T	G	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4887	p.N1629K	0.628	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	278	0	0	127	36	22.09	-	-	-	G	240555839	T	G	240555839	3	3	62	1	0	0	0	0	1	0	0	0	5996	1490	52	5	4945	5	FMN2	1	240555839	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	3816236	240555839	8694782	20	3110										
AHCTF1	0	genome.wustl.edu	37	chr1	247067282	247067282	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tttgtcctgatgccaaacacTttctattaccaaaggccagc	6	12	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	247067282	247067282	T	A	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.962	p.K321M	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	119	0	0	110	17	13.39	-	-	-	A	247067282	T	A	247067282	3	1	62	1	0	0	0	0	1	0	0	0	408	1609	56	5	5985	5	AHCTF1	1	247067282	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	6511443	247067282	2183339	21	3111										
OR2G3	0	genome.wustl.edu	37	chr1	247768964	247768964	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccaccctcgtctggaggctgTtctctttgtatttgtccttt	8	12	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	247768964	247768964	T	C	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.77	p.V26A	0.001	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	174	1	0.57	284	66	18.86	-	-	-	C	247768964	T	C	247768964	3	2	62	1	0	0	0	0	1	0	0	0	11072	1725	60	5	79	5	OR2G3	1	247768964	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	701682	247768964	1481657	22	3112										
OR2T34	0	genome.wustl.edu	37	chr1	248737771	248737771	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccacagcctgacggggaaatGgtatcatctccagtgacctg	11	12	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	248737771	248737771	G	T	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	silent	c.288	p.T96	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	32	0	0	222	44	16.54	-	-	-	T	248737771	G	T	248737771	2	4	62	1	0	0	0	0	0	0	0	1	11098	1335	47	4		4	OR2T34	1	248737771	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	968807	248737771	512850	23	3113										
OR2T10	0	genome.wustl.edu	37	chr1	248756246	248756246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	taaggatagtgtagaaaaagGatgacatcatatctttctca	8	5	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	1	248756246	248756246	G	T	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	missense	c.824	p.S275Y	0.039	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	60	0	0	89	18	16.82	-	-	-	T	248756246	G	T	248756246	3	4	62	1	0	0	0	0	1	0	0	0	11090	1174	41	2	117	2	OR2T10	1	248756246	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	18475	248756246	494375	24	3114										
NBAS	0	genome.wustl.edu	37	chr2	15378705	15378705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggtaactttagaatccttagCttcttgagcttcgtcttctg	8	9	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	15378705	15378705	C	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.5830	p.A1944T	0.000	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	334	0	0	137	69	33.5	-	-	-	T	15378705	C	T	15378705	3	4	62	1	0	0	0	0	1	0	0	0	10258	797	28	4	1317	4	NBAS	2	15378705	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		15378705	227820668	25	3115										
ALK	0	genome.wustl.edu	37	chr2	29432670	29432675	+	In_Frame_Del	DEL	ATCCCG	ATCCCG	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	acctgtagatgtctcgggccAtcccgaagtctccaatcttg							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	ATCCCG	ATCCCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	29432670	29432675	ATCCCG	-	DEL	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	in_frame_del	c.3818_3813	p.FGM1271in_frame_delL	1.000:1.000:0.873:1.000:1.000:0.947	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	17	0	0	84	19	18.27	-	-	-	-	29432675	ATCCCG	-	29432670	7	5	62	1	0	1	0	1	0	0	0	0	525	217	8	0	1064	0	ALK	2	29432670	In_Frame_Del	DEL	ATCCCG	TCGA-A2-A0T0-01A-22D-A099-09	14053965	29432670	213766703	26	3116										
KIAA1841	0	genome.wustl.edu	37	chr2	61343192	61343192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctgtgcccagaggaaagaaaAggcattggagaaggtaactc	13	7	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	61343192	61343192	A	G	SNP	KIAA1841	ENST00000356719	human	ensembl	69_37n	1	known	missense	c.1823	p.K608R	0.971	NULL	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	175	0	0	226	45	16.61	-	-	-	G	61343192	A	G	61343192	3	3	62	1	0	0	0	0	1	0	0	0	8313	72	3	5	1881	5	KIAA1841	2	61343192	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	31910522	61343192	181856181	27	3117										
SFXN5	0	genome.wustl.edu	37	chr2	73215386	73215386	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tatgtggtgtgcaggtcttaCctacagcagggaacggcaca	13	9	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	73215386	73215386	C	T	SNP	SFXN5	ENST00000272433	human	ensembl	69_37n	-1	known	splice_site	c.625+1	e10+1	1.000	-	-	-	no_errors	SFXN5	HGNC	ENSG00000144040	28	0	0	149	53	26.24	-	-	-	T	73215386	C	T	73215386	5	4	62	1	0	0	0	0	0	0	1	0	14286	521	18	4	416	4	SFXN5	2	73215386	Splice_Site	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	11872194	73215386	169983987	28	3118										
POLR1B	0	genome.wustl.edu	37	chr2	113321941	113321941	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgctgtttgtttcctttaccAggggtcactcccattgatgg	10	10	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	113321941	113321941	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	splice_site	c.1727-2	e11-2	1.000	-	-	-	no_errors	POLR1B	HGNC	ENSG00000125630	40	0	0	102	38	27.14	-	-	-	G	113321941	A	G	113321941	5	3	62	1	0	0	0	0	0	0	1	0	12284	202	7	5	1649	5	POLR1B	2	113321941	Splice_Site	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	40106555	113321941	129877432	29	3119										
MAP3K2	0	genome.wustl.edu	37	chr2	128084359	128084359	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aattcatctggaatgtaaccTgggggaggagaacttctatc	11	7	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	128084359	128084359	T	A	SNP	MAP3K2	ENST00000344908	human	ensembl	69_37n	-1	known	silent	c.501	p.P167	0.625	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967	135	0	0	44	24	35.29	-	-	-	A	128084359	T	A	128084359	2	1	62	1	0	0	0	0	0	0	0	1	9321	1567	55	5		5	MAP3K2	2	128084359	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	14762418	128084359	115115014	30	3120										
TTN	0	genome.wustl.edu	37	chr2	179398516	179398516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agttatagttactccaaaccGgacattttcacctacataag	5	10	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	179398516	179398516	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.95122	p.R31708W	1.000	pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	149	0	0	52	12	18.75	-	-	-	A	179398516	G	A	179398516	3	1	62	1	0	0	0	0	1	0	0	0	16832	1115	39	1	5173	1	TTN	2	179398516	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	51314157	179398516	63800857	31	3121										
TTN	0	genome.wustl.edu	37	chr2	179437368	179437368	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctattttctacagttagtatAtatttgccactgtcaaatct	4	8	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	179437368	179437368	A	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.65787	p.Y21929*	0.996	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	28	0	0	50	22	30.56	-	-	-	T	179437368	A	T	179437368	4	4	62	1	0	0	0	0	0	1	0	0	16832	456	16	5	34636	5	TTN	2	179437368	Nonsense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	38852	179437368	63762005	32	3122										
TTN	0	genome.wustl.edu	37	chr2	179441108	179441113	+	In_Frame_Del	DEL	CAGTGA	CAGTGA	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agcagatttcttggtagtatCagtgacatgcggatttgaag							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CAGTGA	CAGTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	179441108	179441113	CAGTGA	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	in_frame_del	c.62047_62042	p.VT20681in_frame_del	1.000:0.504:0.999:1.000:1.000:1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	38	0	0	76	15	16.3	-	-	-	-	179441113	CAGTGA	-	179441108	7	5	62	1	0	1	0	1	0	0	0	0	16832	826	29	0	38376	0	TTN	2	179441108	In_Frame_Del	DEL	CAGTGA	TCGA-A2-A0T0-01A-22D-A099-09	3740	179441108	63758265	33	3123										
HIBCH	0	genome.wustl.edu	37	chr2	191117010	191117010	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gagtcgtggcaagaaataacCtccacccacatcagggaaca	9	12	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	191117010	191117010	C	G	SNP	HIBCH	ENST00000359678	human	ensembl	69_37n	-1	known	missense	c.541	p.G181R	1.000	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	HIBCH	HGNC	ENSG00000198130	127	0	0	62	14	18.42	-	-	-	G	191117010	C	G	191117010	3	3	62	1	0	0	0	0	1	0	0	0	7151	681	24	4	647	4	HIBCH	2	191117010	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	11675902	191117010	52082363	34	3124										
COL4A4	0	genome.wustl.edu	37	chr2	227886853	227886853	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	caggaaggcctgggattcggGgacagtcatccacatctgca	13	11	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	2	227886853	227886853	G	C	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.4127	p.P1376R	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	10	0	0	42	19	31.15	-	-	-	C	227886853	G	C	227886853	3	2	62	1	0	0	0	0	1	0	0	0	3723	1232	43	4	965	4	COL4A4	2	227886853	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	36769843	227886853	15312520	35	3125										
PLCL2	0	genome.wustl.edu	37	chr3	17053574	17053574	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcatctttgagaacactgtgGattaaaaccgtggatgaggt	12	6	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	17053574	17053574	G	A	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	nonsense	c.2358	p.W786*	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	122	0	0	48	16	25	-	-	-	A	17053574	G	A	17053574	4	1	62	1	0	0	0	0	0	1	0	0	12114	1183	41	2	2736	2	PLCL2	3	17053574	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		17053574	180968856	36	3126										
PLCL2	0	genome.wustl.edu	37	chr3	17131237	17131249	+	Frame_Shift_Del	DEL	CTTTTGAAATATG	CTTTTGAAATATG	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgttatagggacaagcagatCttttgaaatatgctaagaat							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CTTTTGAAATATG	CTTTTGAAATATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	17131237	17131249	CTTTTGAAATATG	-	DEL	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	frame_shift_del	c.2839_2851	p.L948fs	1.000:1.000:0.989:0.991:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.779:1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	150	0	0	52	11	17.46	-	-	-	-	17131249	CTTTTGAAATATG	-	17131237	7	5	62	1	0	1	0	1	0	0	0	0	12114	913	32	0	3233	0	PLCL2	3	17131237	Frame_Shift_Del	DEL	CTTTTGAAATATG	TCGA-A2-A0T0-01A-22D-A099-09	77663	17131237	180891193	37	3127										
UBE2E1	0	genome.wustl.edu	37	chr3	23932006	23932006	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttcttttcttccagccgaccCcttggtgggaagtattgcca	9	12	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	23932006	23932006	C	G	SNP	UBE2E1	ENST00000306627	human	ensembl	69_37n	1	known	missense	c.491	p.P164R	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2E1	HGNC	ENSG00000170142	102	0	0	65	22	25.29	-	-	-	G	23932006	C	G	23932006	3	3	62	1	0	0	0	0	1	0	0	0	16949	623	22	4	509	4	UBE2E1	3	23932006	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	6800769	23932006	174090424	38	3128										
XIRP1	0	genome.wustl.edu	37	chr3	39229254	39229254	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgctgctcccgttggtggatCatctccaggggctgggtctc	14	12	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	39229254	39229254	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.1683	p.M561I	0.792	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	11	0	0	43	14	24.56	-	-	-	T	39229254	C	T	39229254	3	4	62	1	0	0	0	0	1	0	0	0	17526	826	29	2	3852	2	XIRP1	3	39229254	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	15297248	39229254	158793176	39	3129										
DALRD3	0	genome.wustl.edu	37	chr3	49053734	49053734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aaaggtgccactctttgtgcCcttcgtggagatactgctgt	11	10	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	49053734	49053734	C	A	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.1186	p.G396C	1.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	33	0	0	51	34	40	-	-	-	A	49053734	C	A	49053734	3	1	62	1	0	0	0	0	1	0	0	0	4261	623	22	4	461	4	DALRD3	3	49053734	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	9824480	49053734	148968696	40	3130										
ITIH1	0	genome.wustl.edu	37	chr3	52820422	52820422	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcgagcgcctctgggcctacCtcaccatccaggagctgctg	11	16	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	52820422	52820422	C	G	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	missense	c.1705	p.L569V	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	16	0	0	63	14	18.18	-	-	-	G	52820422	C	G	52820422	3	3	62	1	0	0	0	0	1	0	0	0	7957	681	24	4	1755	4	ITIH1	3	52820422	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	3766688	52820422	145202008	41	3131										
TIGIT	0	genome.wustl.edu	37	chr3	114018446	114018446	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gttttgtcctccctctagtgGctgagcacggtgccaggttc	12	12	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	114018446	114018446	G	C	SNP	TIGIT	ENST00000383671	human	ensembl	69_37n	1	known	missense	c.394	p.A132P	0.617	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TIGIT	HGNC	ENSG00000181847	19	0	0	39	15	27.78	-	-	-	C	114018446	G	C	114018446	3	2	62	1	0	0	0	0	1	0	0	0	15997	1203	42	4	404	4	TIGIT	3	114018446	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	61198024	114018446	84003984	42	3132										
TMEM39A	0	genome.wustl.edu	37	chr3	119150930	119150930	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aaaacatagtagttgcagaaGaggatgagagccatggaaag	13	4	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	119150930	119150930	G	C	SNP	TMEM39A	ENST00000319172	human	ensembl	69_37n	-1	known	silent	c.1365	p.L455	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142	51	0	0	42	16	27.59	-	-	-	C	119150930	G	C	119150930	2	2	62	1	0	0	0	0	0	0	0	1	16256	929	33	2		2	TMEM39A	3	119150930	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	5132484	119150930	78871500	43	3133										
POPDC2	0	genome.wustl.edu	37	chr3	119379073	119379073	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	caggcactgaaccagccccaCagcacgcagcacaggtaacc	9	17	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	119379073	119379073	C	T	SNP	POPDC2	ENST00000341124	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.998	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577	18	0	0	135	57	29.69	-	-	-	T	119379073	C	T	119379073	2	4	62	1	0	0	0	0	0	0	0	1	12329	465	17	4		4	POPDC2	3	119379073	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	228143	119379073	78643357	44	3134										
CASR	0	genome.wustl.edu	37	chr3	121980913	121980913	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccatcccaggaagtctgtccAcaatggttttgccaaggagt	10	11	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	121980913	121980913	A	T	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.1031	p.H344L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	24	0	0	73	28	27.72	-	-	-	T	121980913	A	T	121980913	3	4	62	1	0	0	0	0	1	0	0	0	2707	159	6	5	1041	5	CASR	3	121980913	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	2601840	121980913	76041517	45	3135										
COL6A6	0	genome.wustl.edu	37	chr3	130284028	130284028	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aaagtgataaattcactgagCatgggcataaataagtcaga	9	5	2	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	130284028	130284028	C	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.852	p.S284R	0.971	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	51	0	0	55	26	32.1	-	-	-	A	130284028	C	A	130284028	3	1	62	1	0	0	0	0	1	0	0	0	3733	709	25	4	862	4	COL6A6	3	130284028	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	8303115	130284028	67738402	46	3136										
ARMC8	0	genome.wustl.edu	37	chr3	137983034	137983034	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccagtttccaggatcatgctGtttggaaacctttaatgaag	9	8	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	137983034	137983034	G	C	SNP	ARMC8	ENST00000469044	human	ensembl	69_37n	1	known	missense	c.1279	p.V427L	0.999	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098	141	0	0	54	31	36.47	-	-	-	C	137983034	G	C	137983034	3	2	62	1	0	0	0	0	1	0	0	0	961	1377	48	4	1357	4	ARMC8	3	137983034	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	7699006	137983034	60039396	47	3137										
CEP70	0	genome.wustl.edu	37	chr3	138216888	138216888	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cttacctaagatttcaagtaGatcattagtaaatgcctgaa	6	7	2	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	138216888	138216888	G	C	SNP	CEP70	ENST00000264982	human	ensembl	69_37n	-1	known	missense	c.1717	p.L573V	1.000	NULL	pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CEP70	HGNC	ENSG00000114107	233	0	0	93	67	41.61	-	-	-	C	138216888	G	C	138216888	3	2	62	1	0	0	0	0	1	0	0	0	3288	933	33	2	84	2	CEP70	3	138216888	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	233854	138216888	59805542	48	3138										
CLSTN2	0	genome.wustl.edu	37	chr3	140123537	140123537	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggccattgacgaggactgctCcccacagtacagccagatct	10	14	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	140123537	140123537	C	A	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.566	p.S189Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	22	0	0	88	20	18.52	-	-	-	A	140123537	C	A	140123537	3	1	62	1	0	0	0	0	1	0	0	0	3592	855	30	2	580	2	CLSTN2	3	140123537	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	1906649	140123537	57898893	49	3139										
GP5	0	genome.wustl.edu	37	chr3	194118427	194118427	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tggagcagaagtctctcgagCttagcctgtgctccaagcaa	11	11	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	194118427	194118427	C	T	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	silent	c.585	p.K195	0.082	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	11	0	0	42	15	26.32	-	-	-	T	194118427	C	T	194118427	2	4	62	1	0	0	0	0	0	0	0	1	6633	796	28	4		4	GP5	3	194118427	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	53994890	194118427	3904003	50	3140										
MUC4	0	genome.wustl.edu	37	chr3	195512196	195512196	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cctgtggatattgaggaagcGtcggtgacaagaagaggggt	17	5	0	4			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	3	195512196	195512196	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.6255	p.D2085	0.104	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	121	1	0.82	167	30	15.23	-	-	-	A	195512196	G	A	195512196	2	1	62	1	0	0	0	0	0	0	0	1	10050	1136	40	1		1	MUC4	3	195512196	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1393769	195512196	2510234	51	3141										
LETM1	0	genome.wustl.edu	37	chr4	1838173	1838173	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	taccttgagtgactgagtctCaaatgtggatggcaacatgt	11	7	1	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	1838173	1838173	C	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.721	p.E241K	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	25	0	0	85	45	34.62	-	-	-	T	1838173	C	T	1838173	3	4	62	1	0	0	0	0	1	0	0	0	8788	835	29	2	1542	2	LETM1	4	1838173	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		1838173	189316103	52	3142										
PDGFRA	0	genome.wustl.edu	37	chr4	55156541	55156541	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcctgctgtggcacgcatgcGtgtggactcagacaatgcat	12	11	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	55156541	55156541	G	C	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.2942	p.R981P	0.677	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	42	0	0	86	40	31.75	-	-	-	C	55156541	G	C	55156541	3	2	62	1	0	0	0	0	1	0	0	0	11734	1145	40	3	3024	3	PDGFRA	4	55156541	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	53318368	55156541	135997735	53	3143										
UGT2B15	0	genome.wustl.edu	37	chr4	69519794	69519794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	acttcaatgcattgagcaaaTctctacttgacatggtcctg	7	10	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	69519794	69519794	T	C	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	missense	c.1274	p.D425G	0.980	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	103	0	0	77	30	28.04	-	-	-	C	69519794	T	C	69519794	3	2	62	1	0	0	0	0	1	0	0	0	17055	1435	50	5	1943	5	UGT2B15	4	69519794	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	14363253	69519794	121634482	54	3144										
ARHGAP24	0	genome.wustl.edu	37	chr4	86863218	86863218	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctgtgatcctttttttttaaGgcatttttggacagaaactg	8	6	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	86863218	86863218	G	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	splice_site	c.392-1	e4-1	1.000	-	-	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	238	0	0	72	25	25.77	-	-	-	T	86863218	G	T	86863218	5	4	62	1	0	0	0	0	0	0	1	0	875	1014	35	4	521	4	ARHGAP24	4	86863218	Splice_Site	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	17343424	86863218	104291058	55	3145										
HERC5	0	genome.wustl.edu	37	chr4	89388332	89388332	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gccgcttccagtgaaagtatCatcaagtgaagaactcaaac	8	10	3	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	89388332	89388332	C	A	SNP	HERC5	ENST00000264350	human	ensembl	69_37n	1	known	nonsense	c.1034	p.S345*	0.324	pfam_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646	119	0	0	71	28	28.28	-	-	-	A	89388332	C	A	89388332	4	1	62	1	0	0	0	0	0	1	0	0	7112	838	29	2	1060	2	HERC5	4	89388332	Nonsense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	2525114	89388332	101765944	56	3146										
ANKRD50	0	genome.wustl.edu	37	chr4	125631416	125631416	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agagttcagtacatagggccGtcttgccactgccaggccct	11	13	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	125631416	125631416	G	C	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	missense	c.251	p.T84R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	44	0	0	71	18	20.22	-	-	-	C	125631416	G	C	125631416	3	2	62	1	0	0	0	0	1	0	0	0	676	1145	40	3	4050	3	ANKRD50	4	125631416	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	36243084	125631416	65522860	57	3147										
ZNF827	0	genome.wustl.edu	37	chr4	146791465	146791465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gccttagcacacttcccttcCcttcctggggctttagtgcg	9	15	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	4	146791465	146791465	C	T	SNP	ZNF827	ENST00000508784	human	ensembl	69_37n	-1	known	missense	c.1913	p.G638E	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612	42	0	0	97	41	29.5	-	-	-	T	146791465	C	T	146791465	3	4	62	1	0	0	0	0	1	0	0	0	18273	623	22	4	1356	4	ZNF827	4	146791465	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	21160049	146791465	44362811	58	3148										
DNAH5	0	genome.wustl.edu	37	chr5	13841155	13841155	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gaaagcctgattagttttctGcatgatttttttatcaaact	6	6	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	13841155	13841155	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	nonsense	c.5569	p.Q1857*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	268	0	0	114	31	21.38	-	-	-	A	13841155	G	A	13841155	4	1	62	1	0	0	0	0	0	1	0	0	4640	1328	46	4	8489	4	DNAH5	5	13841155	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		13841155	167074105	59	3149										
TARS	0	genome.wustl.edu	37	chr5	33456148	33456148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atattgaatgaaaaggtgaaTactccaactaccacagtcta	6	8	1	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	33456148	33456148	T	C	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	silent	c.735	p.N245	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	265	0	0	96	15	13.51	-	-	-	C	33456148	T	C	33456148	2	2	62	1	0	0	0	0	0	0	0	1	15651	1403	49	5		5	TARS	5	33456148	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	19614993	33456148	147459112	60	3150										
ADAMTS6	0	genome.wustl.edu	37	chr5	64748724	64748724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atgtgtcattcagccaccaaGgtttgccacttcttgtgaaa	8	10	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	64748724	64748724	G	T	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.653	p.P218H	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	108	0	0	51	31	37.8	-	-	-	T	64748724	G	T	64748724	3	4	62	1	0	0	0	0	1	0	0	0	270	1000	35	4	2784	4	ADAMTS6	5	64748724	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	31292576	64748724	116166536	61	3151										
SLCO4C1	0	genome.wustl.edu	37	chr5	101572605	101572605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgagatcctgttctgctaaaAcattagtcacaactgcattc	6	10	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	101572605	101572605	A	G	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	missense	c.2132	p.V711A	0.227	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	329	0	0	52	26	33.33	-	-	-	G	101572605	A	G	101572605	3	3	62	1	0	0	0	0	1	0	0	0	14819	43	2	5	46	5	SLCO4C1	5	101572605	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	36823881	101572605	79342655	62	3152										
HSD17B4	0	genome.wustl.edu	37	chr5	118824925	118824925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agccagagtatgtggcacctCttgtcctttggctttgtcac	10	11	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	118824925	118824925	C	G	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.661	p.L221V	0.672	prints_Glc/ribitol_DH	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	189	0	0	119	49	29.17	-	-	-	G	118824925	C	G	118824925	3	3	62	1	0	0	0	0	1	0	0	0	7437	913	32	2	695	2	HSD17B4	5	118824925	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	17252320	118824925	62090335	63	3153										
ADAMTS19	0	genome.wustl.edu	37	chr5	128863507	128863507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttcgtgtgataaagcttattCtgctccatgaaactccagta	7	9	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	128863507	128863507	C	G	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.1135	p.L379V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	171	0	0	46	30	39.47	-	-	-	G	128863507	C	G	128863507	3	3	62	1	0	0	0	0	1	0	0	0	264	912	32	2	1153	2	ADAMTS19	5	128863507	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	10038582	128863507	52051753	64	3154										
HSPA4	0	genome.wustl.edu	37	chr5	132412489	132412489	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttattacgactctctcaggaGtgtgagaaactcaagaaatt	8	7	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	132412489	132412489	G	C	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	missense	c.807	p.E269D	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	157	1	0.63	55	36	39.56	-	-	-	C	132412489	G	C	132412489	3	2	62	1	0	0	0	0	1	0	0	0	7465	1020	36	4	833	4	HSPA4	5	132412489	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	3548982	132412489	48502771	65	3155										
PCDHB16	0	genome.wustl.edu	37	chr5	140562836	140562836	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtccgtattgaagtggtggaCatcaatgataacgctcctga	11	8	1	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	140562836	140562836	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	silent	c.702	p.D234	0.381	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	19	0	0	49	22	30.99	-	-	-	T	140562836	C	T	140562836	2	4	62	1	0	0	0	0	0	0	0	1	11614	477	17	4		4	PCDHB16	5	140562836	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	8150347	140562836	40352424	66	3156										
GRIA1	0	genome.wustl.edu	37	chr5	153144138	153144138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcagaggacctagcgaagcaGacagaaattgcctacgggac	13	10	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	153144138	153144138	G	C	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.1998	p.Q666H	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	21	0	0	78	24	23.53	-	-	-	C	153144138	G	C	153144138	3	2	62	1	0	0	0	0	1	0	0	0	6818	933	33	2	2014	2	GRIA1	5	153144138	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	12581302	153144138	27771122	67	3157										
DOCK2	0	genome.wustl.edu	37	chr5	169507239	169507239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccatccccctcaaggcgtctGtcctctctcaaatgagcttt	6	16	4	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	169507239	169507239	G	T	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.5239	p.V1747F	0.027	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	11	0	0	66	30	31.25	-	-	-	T	169507239	G	T	169507239	3	4	62	1	0	0	0	0	1	0	0	0	4722	1377	48	4	5437	4	DOCK2	5	169507239	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	16363101	169507239	11408021	68	3158										
ADAMTS2	0	genome.wustl.edu	37	chr5	178585812	178585812	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cccgtgtctggcttctgctgGaggtaggcccagcggcagac	15	13	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	5	178585812	178585812	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	silent	c.1044	p.L348	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	13	0	0	97	38	28.15	-	-	-	A	178585812	G	A	178585812	2	1	62	1	0	0	0	0	0	0	0	1	265	1161	41	2		2	ADAMTS2	5	178585812	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	9078573	178585812	2329448	69	3159										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123995	26123995	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtgtcgggatggacctgtttCagcaccttgtacacgtacac	11	11	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	6	26123995	26123995	C	G	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	silent	c.138	p.L46	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	40	0	0	146	48	24.74	-	-	-	G	26123995	C	G	26123995	2	3	62	1	0	0	0	0	0	0	0	1	7193	813	29	2		2	HIST1H2BC	6	26123995	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		26123995	144991072	70	3160										
ZNF318	0	genome.wustl.edu	37	chr6	43323219	43323219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atggcttcttgccatgaagtCgttcctgggtgcgtgcagcc	13	11	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	6	43323219	43323219	C	T	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.1853	p.R618Q	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	15	0	0	71	24	25.26	-	-	-	T	43323219	C	T	43323219	3	4	62	1	0	0	0	0	1	0	0	0	17932	884	31	1	5014	1	ZNF318	6	43323219	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	17199224	43323219	127791848	71	3161										
COL12A1	0	genome.wustl.edu	37	chr6	75899454	75899454	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agcaatgaagtctaaaatgtActtgaaattatttcttccca	5	7	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	6	75899454	75899454	A	T	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.472	p.Y158N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	70	0	0	42	7	14.29	-	-	-	T	75899454	A	T	75899454	3	4	62	1	0	0	0	0	1	0	0	0	3699	391	14	5	8963	5	COL12A1	6	75899454	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	32576235	75899454	95215613	72	3162										
SP4	0	genome.wustl.edu	37	chr7	21550872	21550872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	actcccaatgtttcaaccaaCatggaagaattctgaaaagt	6	9	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	21550872	21550872	C	T	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	silent	c.2340	p.N780	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	33	0	0	68	20	22.73	-	-	-	T	21550872	C	T	21550872	2	4	62	1	0	0	0	0	0	0	0	1	15055	477	17	4		4	SP4	7	21550872	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		21550872	137587791	73	3163										
ABHD11	0	genome.wustl.edu	37	chr7	73151593	73151593	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcatccgccagttttcgggcAcgggagcggggcagctcatc	14	13	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	73151593	73151593	A	T	SNP	ABHD11	ENST00000222800	human	ensembl	69_37n	-1	known	silent	c.591	p.R197	0.000	pfam_AB_hydrolase_1,pfam_Thioesterase	pfam_AB_hydrolase_1,pfam_PGAP1-like,pfam_Thioesterase,pfam_Esterase_put,prints_AB_hydrolase_1	-	no_errors	ABHD11	HGNC	ENSG00000106077	8	0	0	45	23	33.82	-	-	-	T	73151593	A	T	73151593	2	4	62	1	0	0	0	0	0	0	0	1	75	146	6	5		5	ABHD11	7	73151593	Silent	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	51600721	73151593	85987070	74	3164										
ZNF394	0	genome.wustl.edu	37	chr7	99097679	99097679	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cccagggtcccaactcggcgTcactgccgcgcctctgggcg	13	18	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	99097679	99097679	T	C	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.38	p.D13G	0.012	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	9	0	0	44	21	32.31	-	-	-	C	99097679	T	C	99097679	3	2	62	1	0	0	0	0	1	0	0	0	17976	1667	58	5	1659	5	ZNF394	7	99097679	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	25946086	99097679	60040984	75	3165										
RELN	0	genome.wustl.edu	37	chr7	103216144	103216144	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tctcctggatccatcggaatCtggtcttgctgttgggaaaa	11	9	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	103216144	103216144	C	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4154	p.R1385I	1.000	superfamily_Growth_fac_rcpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	53	0	0	89	31	25.83	-	-	-	A	103216144	C	A	103216144	3	1	62	1	0	0	0	0	1	0	0	0	13303	913	32	2	6376	2	RELN	7	103216144	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	4118465	103216144	55922519	76	3166										
TAS2R16	0	genome.wustl.edu	37	chr7	122635007	122635007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aataaataagacggcaagggAcctcagggcagtgaagcgcg	14	8	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	122635007	122635007	A	C	SNP	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	missense	c.682	p.S228A	0.044	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	68	0	0	47	39	45.35	-	-	-	C	122635007	A	C	122635007	3	2	62	1	0	0	0	0	1	0	0	0	15661	275	10	5	197	5	TAS2R16	7	122635007	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	19418863	122635007	36503656	77	3167										
GPR37	0	genome.wustl.edu	37	chr7	124387321	124387321	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cgatcatttcgtagtacatcTgtacgttggtggcagcacgg	12	9	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	7	124387321	124387321	T	G	SNP	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	missense	c.1100	p.Q367P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	25	0	0	68	62	47.69	-	-	-	G	124387321	T	G	124387321	3	3	62	1	0	0	0	0	1	0	0	0	6741	1580	55	5	745	5	GPR37	7	124387321	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	1752314	124387321	34751342	78	3168										
DOCK5	0	genome.wustl.edu	37	chr8	25193755	25193755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttctttctcattcttctaagGaaactctccaaggtactgaa	5	10	5	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	25193755	25193755	G	A	SNP	DOCK5	ENST00000444569	human	ensembl	69_37n	1	novel	missense	c.1507	p.E503K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK5	HGNC	ENSG00000147459	258	1	0.39	47	34	41.98	-	-	-	A	25193755	G	A	25193755	3	1	62	1	0	0	0	0	1	0	0	0	4725	1188	41	2	2279	2	DOCK5	8	25193755	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		25193755	121170267	79	3169										
UNC5D	0	genome.wustl.edu	37	chr8	35541224	35541224	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tggctaagaggagaagcctgTcggccactgttgtggtctac	14	9	1	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	35541224	35541224	T	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.730	p.S244T	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	36	0	0	76	25	24.75	-	-	-	A	35541224	T	A	35541224	3	1	62	1	0	0	0	0	1	0	0	0	17092	1667	58	5	748	5	UNC5D	8	35541224	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	10347469	35541224	110822798	80	3170										
ASPH	0	genome.wustl.edu	37	chr8	62563641	62563641	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtaccatttcatggagaaggGactgaatttgttcttttgct	10	6	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	62563641	62563641	G	C	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.458	p.S153C	0.329	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	250	0	0	92	28	23.33	-	-	-	C	62563641	G	C	62563641	3	2	62	1	0	0	0	0	1	0	0	0	1057	1174	41	2	1914	2	ASPH	8	62563641	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	27022417	62563641	83800381	81	3171										
CSPP1	0	genome.wustl.edu	37	chr8	68089921	68089921	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tccattgactacagttgactTagatgccatcccaagtgcta	7	11	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	68089921	68089921	T	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.3101	p.L1034S	0.757	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	201	0	0	72	29	28.71	-	-	-	C	68089921	T	C	68089921	3	2	62	1	0	0	0	0	1	0	0	0	3994	1764	61	5	3312	5	CSPP1	8	68089921	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	5526280	68089921	78274101	82	3172										
PREX2	0	genome.wustl.edu	37	chr8	69033276	69033276	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgctcagaacatcaggaaatTtgttgaaggtcagcatgaaa	10	6	3	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	69033276	69033276	T	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.3716	p.F1239Y	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	37	0	0	50	18	26.47	-	-	-	A	69033276	T	A	69033276	3	1	62	1	0	0	0	0	1	0	0	0	12558	1841	64	5	4063	5	PREX2	8	69033276	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	943355	69033276	77330746	83	3173										
UBR5	0	genome.wustl.edu	37	chr8	103299695	103299695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcagttgctgcagtgacaacGcttctgcgcccactagcatt	10	13	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	103299695	103299695	G	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.4923	p.S1641	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	55	0	0	176	40	18.52	-	-	-	A	103299695	G	A	103299695	2	1	62	1	0	0	0	0	0	0	0	1	17002	1078	38	1		1	UBR5	8	103299695	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	34266419	103299695	43064327	84	3174										
PTK2	0	genome.wustl.edu	37	chr8	141753376	141753376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atcgggataatccaaagtctCctaattttacacaatcattt	4	9	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	141753376	141753376	C	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.1688	p.G563V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	285	0	0	109	25	18.66	-	-	-	A	141753376	C	A	141753376	3	1	62	1	0	0	0	0	1	0	0	0	12843	855	30	2	1522	2	PTK2	8	141753376	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	38453681	141753376	4610646	85	3175										
EEF1D	0	genome.wustl.edu	37	chr8	144669010	144669010	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcatgtgctaggaagtttgtAgccatttttctgctgggagg	13	6	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	144669010	144669010	A	T	SNP	EEF1D	ENST00000530616	human	ensembl	69_37n	-1	known	missense	c.245	p.L82Q	0.740	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EEF1D	HGNC	ENSG00000104529	57	0	0	78	25	24.27	-	-	-	T	144669010	A	T	144669010	3	4	62	1	0	0	0	0	1	0	0	0	4961	407	15	5	867	5	EEF1D	8	144669010	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	2915634	144669010	1695012	86	3176										
PLEC	0	genome.wustl.edu	37	chr8	144994265	144994265	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcccttgaagccacccacggGgacctcaaccggggtctttt	11	15	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	8	144994265	144994265	G	C	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.10135	p.P3379A	0.671	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	8	0	0	39	9	18.75	-	-	-	C	144994265	G	C	144994265	3	2	62	1	0	0	0	0	1	0	0	0	12126	1232	43	4	3923	4	PLEC	8	144994265	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	325255	144994265	1369757	87	3177										
SYK	0	genome.wustl.edu	37	chr9	93607735	93607735	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gggtcaggctctggagcaggCcatcatcagtcagaagcctc	13	12	5	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	9	93607735	93607735	C	G	SNP	SYK	ENST00000375746	human	ensembl	69_37n	1	known	missense	c.437	p.A146G	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	39	0	0	55	12	17.91	-	-	-	G	93607735	C	G	93607735	3	3	62	1	0	0	0	0	1	0	0	0	15530	739	26	4	443	4	SYK	9	93607735	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		93607735	47605696	88	3178										
SFMBT2	0	genome.wustl.edu	37	chr10	7318923	7318923	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttttccagagtacatttccaTtcagaggccatcttcaaagg	7	10	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	10	7318923	7318923	T	C	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	silent	c.801	p.E267	0.057	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	149	0	0	48	70	59.32	-	-	-	C	7318923	T	C	7318923	2	2	62	1	0	0	0	0	0	0	0	1	14246	1490	52	5		5	SFMBT2	10	7318923	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09		7318923	128215824	89	3179										
ZNF438	0	genome.wustl.edu	37	chr10	31139084	31139084	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cccctcctggccagcaacctGcatcagggcatagttctggg	11	15	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	10	31139084	31139084	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	nonsense	c.250	p.Q84*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	158	0	0	124	47	27.49	-	-	-	A	31139084	G	A	31139084	4	1	62	1	0	0	0	0	0	1	0	0	18006	1328	46	4	2244	4	ZNF438	10	31139084	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	23820161	31139084	104395663	90	3180										
TET1	0	genome.wustl.edu	37	chr10	70332118	70332118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtctcgatcccgccatgcaaGgccttccagattagtcagga	10	13	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	10	70332118	70332118	G	A	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.23	p.R8K	0.980	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	34	0	0	16	22	57.89	-	-	-	A	70332118	G	A	70332118	3	1	62	1	0	0	0	0	1	0	0	0	15864	1000	35	4	25	4	TET1	10	70332118	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	39193034	70332118	65202629	91	3181										
PNLIPRP3	0	genome.wustl.edu	37	chr10	118236225	118236225	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atgcagatgttaacgttggaAacattacaagtgttcagttc	9	6	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	10	118236225	118236225	A	T	SNP	PNLIPRP3	ENST00000369230	human	ensembl	69_37n	1	known	missense	c.1234	p.N412Y	0.836	pfam_LipOase_LH2,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837	130	1	0.76	43	34	44.16	-	-	-	T	118236225	A	T	118236225	3	4	62	1	0	0	0	0	1	0	0	0	12226	14	1	5	1276	5	PNLIPRP3	10	118236225	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	47904107	118236225	17298522	92	3182										
WDR11	0	genome.wustl.edu	37	chr10	122646224	122646234	+	Frame_Shift_Del	DEL	AATCTGAACTT	AATCTGAACTT	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gctgcaggaggcagaaagtaAatctgaacttagtcagaaca							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	AATCTGAACTT	AATCTGAACTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	10	122646224	122646234	AATCTGAACTT	-	DEL	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	frame_shift_del	c.1997_2007	p.L669fs	1.000:1.000:1.000:1.000:0.751:1.000:1.000:1.000:1.000:1.000:0.996	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	46	0	0	30	13	30.23	-	-	-	-	122646234	AATCTGAACTT	-	122646224	7	5	62	1	0	1	0	1	0	0	0	0	17370	14	1	0	2059	0	WDR11	10	122646224	Frame_Shift_Del	DEL	AATCTGAACTT	TCGA-A2-A0T0-01A-22D-A099-09	4409999	122646224	12888523	93	3183										
DEAF1	0	genome.wustl.edu	37	chr11	654016	654016	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttgtggcagccggtgcactcGctcatagcctcccggccgca	12	16	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	654016	654016	G	A	SNP	DEAF1	ENST00000527170	human	ensembl	69_37n	-1	known	nonsense	c.901	p.R301*	0.974	pfam_Znf_MYND,pfscan_Znf_MYND	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DEAF1	HGNC	ENSG00000177030	10	0	0	78	32	29.09	-	-	-	A	654016	G	A	654016	4	1	62	1	0	0	0	0	0	1	0	0	4411	1078	38	1	166	1	DEAF1	11	654016	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		654016	134352500	94	3184										
NUP98	0	genome.wustl.edu	37	chr11	3752719	3752725	+	Frame_Shift_Del	DEL	CCGGACT	CCGGACT	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gttgtttgtaaagcctttggCcggactctagtggcagggcg							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CCGGACT	CCGGACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	3752719	3752725	CCGGACT	-	DEL	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	frame_shift_del	c.1632_1626	p.R542fs	0.695:0.999:0.998:0.666:1.000:1.000:1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	144	0	0	143	36	20.11	-	-	-	-	3752725	CCGGACT	-	3752719	7	5	62	1	0	1	0	1	0	0	0	0	10846	726	26	0	3871	0	NUP98	11	3752719	Frame_Shift_Del	DEL	CCGGACT	TCGA-A2-A0T0-01A-22D-A099-09	3098703	3752719	131253797	95	3185										
CNGA4	0	genome.wustl.edu	37	chr11	6262921	6262921	+	Missense_Mutation	SNP	T	T	C													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	catcatccgagagggtcaacTggccgtggtggcagatgatg							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	6262921	6262921	T	C	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	missense	c.1178	p.L393P	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	25	0	0	106	46	30.07	-	-	-	C	6262921	T	C	6262921	3	2	62	1	0	0	0	0	1	0	0	0	3629	1580	55	5	1196	5	CNGA4	11	6262921	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	2510202	6262921	128743595	96	3186	25	2								
CNGA4	0	genome.wustl.edu	37	chr11	6262922	6262922	+	Silent	SNP	G	G	T													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atcatccgagagggtcaactGgccgtggtggcagatgatgg							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	6262922	6262922	G	T	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	24	0	0	104	48	31.37	-	-	-	T	6262922	G	T	6262922	2	4	62	1	0	0	0	0	0	0	0	1	3629	1335	47	4		4	CNGA4	11	6262922	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1	6262922	128743594	97	3187	25	2								
TSPAN18	0	genome.wustl.edu	37	chr11	44948291	44948292	+	Frame_Shift_Del	DEL	GG	GG	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tggccggagcccttgccatcGgggtactggccatcgaggta							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	44948291	44948292	GG	-	DEL	TSPAN18	ENST00000340160	human	ensembl	69_37n	1	known	frame_shift_del	c.682_683	p.V229fs	1.000:1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN18	HGNC	ENSG00000157570	18	0	0	111	27	19.57	-	-	-	-	44948292	GG	-	44948291	7	5	62	1	0	1	0	1	0	0	0	0	16738	1116	39	0	704	0	TSPAN18	11	44948291	Frame_Shift_Del	DEL	GG	TCGA-A2-A0T0-01A-22D-A099-09	38685369	44948291	90058225	98	3188										
MADD	0	genome.wustl.edu	37	chr11	47296330	47296330	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggagtcacgcgatatggcatCtgtgttaacttctaccgctc	10	11	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	47296330	47296330	C	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	silent	c.279	p.I93	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	18	0	0	47	15	24.19	-	-	-	A	47296330	C	A	47296330	2	1	62	1	0	0	0	0	0	0	0	1	9219	903	32	2		2	MADD	11	47296330	Silent	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	2348039	47296330	87710186	99	3189										
MS4A15	0	genome.wustl.edu	37	chr11	60540906	60540906	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aacatcctcagcgtcatggcGgcctttgctgggacagccat	11	13	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	60540906	60540906	G	A	SNP	MS4A15	ENST00000405633	human	ensembl	69_37n	1	known	silent	c.447	p.A149	0.717	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A15	HGNC	ENSG00000166961	15	0	0	114	35	23.49	-	-	-	A	60540906	G	A	60540906	2	1	62	1	0	0	0	0	0	0	0	1	9931	1103	39	1		1	MS4A15	11	60540906	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	13244576	60540906	74465610	100	3190										
TCIRG1	0	genome.wustl.edu	37	chr11	67818248	67818248	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tctactcaggcacgggctacAagctgagtcccttcaccttc	8	15	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	67818248	67818248	A	C	SNP	TCIRG1	ENST00000265686	human	ensembl	69_37n	1	known	missense	c.2455	p.K819Q	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	TCIRG1	HGNC	ENSG00000110719	15	0	0	81	38	31.93	-	-	-	C	67818248	A	C	67818248	3	2	62	1	0	0	0	0	1	0	0	0	15798	131	5	5	2529	5	TCIRG1	11	67818248	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	7277342	67818248	67188268	101	3191										
NPAT	0	genome.wustl.edu	37	chr11	108040720	108040720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	agatactgggatcatccctaCcattccttggagtacaggct	9	11	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	108040720	108040720	C	T	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	missense	c.2836	p.V946I	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	140	0	0	49	25	33.78	-	-	-	T	108040720	C	T	108040720	3	4	62	1	0	0	0	0	1	0	0	0	10638	507	18	4	1467	4	NPAT	11	108040720	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	40222472	108040720	26965796	102	3192										
DSCAML1	0	genome.wustl.edu	37	chr11	117302417	117302434	+	In_Frame_Del	DEL	GACTTCACATTCTTCCTG	GACTTCACATTCTTCCTG	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggttccgggtgctgtgggctGacttcacattcttcctggac							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	GACTTCACATTCTTCCTG	GACTTCACATTCTTCCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	11	117302417	117302434	GACTTCACATTCTTCCTG	-	DEL	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	in_frame_del	c.5387_5370	p.RKNVKS1791in_frame_del	1.000:1.000:1.000:1.000:1.000:0.985:1.000:0.994:0.435:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	17	0	0	135	27	16.56	-	-	-	-	117302434	GACTTCACATTCTTCCTG	-	117302417	7	5	62	1	0	1	0	1	0	0	0	0	4804	1294	45	0	966	0	DSCAML1	11	117302417	In_Frame_Del	DEL	GACTTCACATTCTTCCTG	TCGA-A2-A0T0-01A-22D-A099-09	9261697	117302417	17704099	103	3193										
PRB4	0	genome.wustl.edu	37	chr12	11461466	11461466	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aggtgggggaccttgggactGgttacctccttgtgggggtg	19	7	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	12	11461466	11461466	G	C	SNP	PRB4	ENST00000279575	human	ensembl	69_37n	-1	known	missense	c.451	p.Q151E	0.001	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	31	0	0	74	41	35.65	-	-	-	C	11461466	G	C	11461466	3	2	62	1	0	0	0	0	1	0	0	0	12526	1357	47	4	296	4	PRB4	12	11461466	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		11461466	122390429	104	3194										
KRT85	0	genome.wustl.edu	37	chr12	52760852	52760852	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcacgcactgtgcgttggggTcgatctccaggttgaggggc	16	10	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	12	52760852	52760852	T	A	SNP	KRT85	ENST00000257901	human	ensembl	69_37n	-1	known	missense	c.338	p.D113V	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443	24	0	0	130	55	29.73	-	-	-	A	52760852	T	A	52760852	3	1	62	1	0	0	0	0	1	0	0	0	8552	1667	58	5	1221	5	KRT85	12	52760852	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	41299386	52760852	81091043	105	3195										
KRT73	0	genome.wustl.edu	37	chr12	53002195	53002195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	attgctgaatccaaagccagCccctgtgcctgccatcccgg	9	16	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	12	53002195	53002195	C	T	SNP	KRT73	ENST00000305748	human	ensembl	69_37n	-1	known	missense	c.1408	p.A470T	0.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	18	0	0	46	28	37.84	-	-	-	T	53002195	C	T	53002195	3	4	62	1	0	0	0	0	1	0	0	0	8539	739	26	4	218	4	KRT73	12	53002195	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	241343	53002195	80849700	106	3196										
PLBD2	0	genome.wustl.edu	37	chr12	113812735	113812735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gagtgacctcctggttgcccAcaacacctggaacaactacc	8	15	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	12	113812735	113812735	A	G	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	missense	c.782	p.H261R	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	23	0	0	51	45	46.88	-	-	-	G	113812735	A	G	113812735	3	3	62	1	0	0	0	0	1	0	0	0	12100	159	6	5	800	5	PLBD2	12	113812735	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	60810540	113812735	20039160	107	3197										
CLIP1	0	genome.wustl.edu	37	chr12	122812589	122812589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cagcttgtcctctgtgtccaGcagcgtcttctggaggttct	11	12	4	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	12	122812589	122812589	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	silent	c.3154	p.L1052	0.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	120	1	0.83	67	44	39.64	-	-	-	A	122812589	G	A	122812589	2	1	62	1	0	0	0	0	0	0	0	1	3562	962	34	4		4	CLIP1	12	122812589	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	8999854	122812589	11039306	108	3198										
BRCA2	0	genome.wustl.edu	37	chr13	32953476	32953476	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttatttcagtgaagagcagtTaagagccttgaataatcaca	8	6	2	4			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	13	32953476	32953476	T	G	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	nonsense	c.8777	p.L2926*	0.941	superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	107	0	0	59	32	35.16	-	-	-	G	32953476	T	G	32953476	4	3	62	1	0	0	0	0	0	1	0	0	1507	1764	61	5	8859	5	BRCA2	13	32953476	Nonsense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09		32953476	82216402	109	3199										
SLITRK6	0	genome.wustl.edu	37	chr13	86368270	86368270	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cttcagctcttcgtgggctcCaggataatgtgcctccatat	9	12	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	13	86368270	86368270	C	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	nonsense	c.2374	p.G792*	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	184	0	0	89	70	44.03	-	-	-	A	86368270	C	A	86368270	4	1	62	1	0	0	0	0	0	1	0	0	14836	603	21	4	155	4	SLITRK6	13	86368270	Nonsense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	53414794	86368270	28801608	110	3200										
OR4M1	0	genome.wustl.edu	37	chr14	20249295	20249295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	actcattttccctagataaaGtggtgtctgtgtttcatact	7	8	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	14	20249295	20249295	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	missense	c.814	p.V272M	0.349	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	167	0	0	125	57	31.32	-	-	-	A	20249295	G	A	20249295	3	1	62	1	0	0	0	0	1	0	0	0	11148	1029	36	4	816	4	OR4M1	14	20249295	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		20249295	87100245	111	3201										
AKAP6	0	genome.wustl.edu	37	chr14	33293160	33293160	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgtgagccagatgttttccaTcaaaaagatgccgaagattg	10	7	1	4			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	14	33293160	33293160	T	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.6141	p.H2047Q	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	58	0	0	36	13	26.53	-	-	-	A	33293160	T	A	33293160	3	1	62	1	0	0	0	0	1	0	0	0	455	1432	50	5	6187	5	AKAP6	14	33293160	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	13043865	33293160	74056380	112	3202										
CPSF2	0	genome.wustl.edu	37	chr14	92628064	92628064	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tataggataagagaccttttAtatgaacaatatgccattgt	7	5	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	14	92628064	92628064	A	G	SNP	CPSF2	ENST00000298875	human	ensembl	69_37n	1	known	silent	c.2325	p.L775	1.000	NULL	pfam_Beta_Casp,pfam_RMMBL,pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	CPSF2	HGNC	ENSG00000165934	189	0	0	44	25	36.23	-	-	-	G	92628064	A	G	92628064	2	3	62	1	0	0	0	0	0	0	0	1	3855	446	16	5		5	CPSF2	14	92628064	Silent	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	59334904	92628064	14721476	113	3203										
TECPR2	0	genome.wustl.edu	37	chr14	102901119	102901119	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	actgtgccttccagcctcagCtgggccccaagtgctgaaca	10	15	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	14	102901119	102901119	C	G	SNP	TECPR2	ENST00000359520	human	ensembl	69_37n	1	known	missense	c.1965	p.S655R	0.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	11	0	0	60	24	28.57	-	-	-	G	102901119	C	G	102901119	3	3	62	1	0	0	0	0	1	0	0	0	15839	796	28	4	1995	4	TECPR2	14	102901119	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	10273055	102901119	4448421	114	3204										
MAPK6	0	genome.wustl.edu	37	chr15	52356303	52356303	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	aattactctactgagccttgTtggcaatactcagatcatca	6	10	4	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	15	52356303	52356303	T	C	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	silent	c.1272	p.C424	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	110	0	0	26	32	55.17	-	-	-	C	52356303	T	C	52356303	2	2	62	1	0	0	0	0	0	0	0	1	9352	1731	60	5		5	MAPK6	15	52356303	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09		52356303	50175089	115	3205										
TCF12	0	genome.wustl.edu	37	chr15	57545524	57545524	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccatgtgctgcggaaccatgCtgtgggaccttccaccagtt	11	13	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	15	57545524	57545524	C	A	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.1325	p.A442D	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	34	0	0	47	22	31.88	-	-	-	A	57545524	C	A	57545524	3	1	62	1	0	0	0	0	1	0	0	0	15782	797	28	4	1456	4	TCF12	15	57545524	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	5189221	57545524	44985868	116	3206										
ZNF434	0	genome.wustl.edu	37	chr16	3433091	3433091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcgccggtgagcactgaactGggaactgttgttgaatctct	13	9	1	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	3433091	3433091	G	C	SNP	ZNF434	ENST00000396846	human	ensembl	69_37n	-1	known	missense	c.1855	p.Q619E	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF434	HGNC	ENSG00000140987	62	0	0	143	43	23.12	-	-	-	C	3433091	G	C	3433091	3	2	62	1	0	0	0	0	1	0	0	0	18004	1357	47	4	242	4	ZNF434	16	3433091	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09		3433091	86921662	117	3207										
PRM3	0	genome.wustl.edu	37	chr16	11367145	11367145	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gggccttcgttgcgggtcggGagggtgtccgcttgggctcg	20	10	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	11367145	11367145	G	T	SNP	PRM3	ENST00000327157	human	ensembl	69_37n	-1	known	missense	c.308	p.S103Y	0.842	NULL	NULL	-	no_stop_codon:pseudogene	PRM3	HGNC	ENSG00000178257	14	0	0	72	43	37.39	-	-	-	T	11367145	G	T	11367145	3	4	62	1	0	0	0	0	1	0	0	0	12615	1188	41	2	4	2	PRM3	16	11367145	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	7934054	11367145	78987608	118	3208										
MYH11	0	genome.wustl.edu	37	chr16	15833955	15833955	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	catgaccaggatctcatcctCcagtttcttgatcttggcct	7	13	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	15833955	15833955	C	G	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.2971	p.E991Q	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	50	0	0	95	41	29.93	-	-	-	G	15833955	C	G	15833955	3	3	62	1	0	0	0	0	1	0	0	0	10103	864	30	2	3079	2	MYH11	16	15833955	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	4466810	15833955	74520798	119	3209										
MYH11	0	genome.wustl.edu	37	chr16	15850316	15850316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccacgaaagacttgtccgtgGctttggggaaccagcattcc	11	12	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	15850316	15850316	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.1652	p.A551D	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	26	0	0	91	43	32.09	-	-	-	T	15850316	G	T	15850316	3	4	62	1	0	0	0	0	1	0	0	0	10103	1203	42	4	4434	4	MYH11	16	15850316	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	16361	15850316	74504437	120	3210										
SMG1	0	genome.wustl.edu	37	chr16	18869547	18869547	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtataccttaatgcctgcatCcatggcctcacgtcatgctg	8	13	2	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	18869547	18869547	C	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.4179	p.W1393C	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	298	0	0	82	31	27.43	-	-	-	A	18869547	C	A	18869547	3	1	62	1	0	0	0	0	1	0	0	0	14884	856	30	2	6946	2	SMG1	16	18869547	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	3019231	18869547	71485206	121	3211										
ACSM5	0	genome.wustl.edu	37	chr16	20442397	20442397	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cccaccctacgatgtgcaggTagcagcctcccccaacttct	7	18	1	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	20442397	20442397	T	C	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	splice_site	c.1206+2	e8+2	1.000	-	-	-	no_errors	ACSM5	HGNC	ENSG00000183549	15	0	0	76	22	22.45	-	-	-	C	20442397	T	C	20442397	5	2	62	1	0	0	0	0	0	0	1	0	187	1652	57	5	1238	5	ACSM5	16	20442397	Splice_Site	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	1572850	20442397	69912356	122	3212										
ZP2	0	genome.wustl.edu	37	chr16	21212763	21212763	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cgcccagcagtcatctaagaCcagcttgatgttggggtcat	11	11	3	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	21212763	21212763	C	G	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	missense	c.1621	p.V541L	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	110	0	0	130	54	29.35	-	-	-	G	21212763	C	G	21212763	3	3	62	1	0	0	0	0	1	0	0	0	18309	507	18	4	640	4	ZP2	16	21212763	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	770366	21212763	69141990	123	3213										
ABCC12	0	genome.wustl.edu	37	chr16	48167699	48167699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cagggcagagtttccactttGgacaaatccagctttttcca	8	11	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	48167699	48167699	G	T	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.1027	p.Q343K	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	123	0	0	160	47	22.71	-	-	-	T	48167699	G	T	48167699	3	4	62	1	0	0	0	0	1	0	0	0	52	1357	47	4	3144	4	ABCC12	16	48167699	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	26954936	48167699	42187054	124	3214										
NUDT21	0	genome.wustl.edu	37	chr16	56481707	56481707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccaacactacttacagtttgAagaaagttgttcccagctgc	7	11	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	56481707	56481707	A	C	SNP	NUDT21	ENST00000300291	human	ensembl	69_37n	-1	known	missense	c.311	p.F104C	1.000	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	-	no_errors	NUDT21	HGNC	ENSG00000167005	44	0	0	73	39	34.82	-	-	-	C	56481707	A	C	56481707	3	2	62	1	0	0	0	0	1	0	0	0	10811	246	9	5	396	5	NUDT21	16	56481707	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	8314008	56481707	33873046	125	3215										
ZNRF1	0	genome.wustl.edu	37	chr16	75138732	75138732	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtgtgatctgcctggaggagCtgctgcagggggacacgata	17	8	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	16	75138732	75138732	C	G	SNP	ZNRF1	ENST00000320619	human	ensembl	69_37n	1	known	missense	c.724	p.L242V	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF1	HGNC	ENSG00000186187	17	0	0	101	41	28.87	-	-	-	G	75138732	C	G	75138732	3	3	62	1	0	0	0	0	1	0	0	0	18304	796	28	4	581	4	ZNRF1	16	75138732	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	18657025	75138732	15216021	126	3216										
POLR2A	0	genome.wustl.edu	37	chr17	7405859	7405859	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tacatccagcggcggctgatCaagtccatggagtcagtgat	12	10	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	7405859	7405859	C	G	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	missense	c.2595	p.I865M	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	13	0	0	40	26	39.39	-	-	-	G	7405859	C	G	7405859	3	3	62	1	0	0	0	0	1	0	0	0	12288	816	29	2	2657	2	POLR2A	17	7405859	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		7405859	73789351	127	3217										
EPN2	0	genome.wustl.edu	37	chr17	19235190	19235211	+	Frame_Shift_Del	DEL	CCCAAAACAATGGAACTACCAG	CCCAAAACAATGGAACTACCAG	-													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	atctgtgacctctctgccatCccaaaacaatggaactacca							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CCCAAAACAATGGAACTACCAG	CCCAAAACAATGGAACTACCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	19235190	19235211	CCCAAAACAATGGAACTACCAG	-	DEL	EPN2	ENST00000314728	human	ensembl	69_37n	1	known	frame_shift_del	c.1436_1457	p.Q480fs	1.000:1.000:1.000:0.951:0.625:0.713:0.835:0.990:0.995:0.974:0.954:0.967:0.976:0.947:0.969:0.969:0.080:0.095:0.181:0.002:0.966:1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134	36	0	0	113	15	11.63	-	-	-	-	19235211	CCCAAAACAATGGAACTACCAG	-	19235190	7	5	62	1	0	1	0	1	0	0	0	0	5223	855	30	0	1466	0	EPN2	17	19235190	Frame_Shift_Del	DEL	CCCAAAACAATGGAACTACCAG	TCGA-A2-A0T0-01A-22D-A099-09	11829331	19235190	61960020	128	3218										
KAT2A	0	genome.wustl.edu	37	chr17	40266620	40266620	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cgctcaatcagcttcttgatGatctgagggaaggaagggac	13	8	4	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	40266620	40266620	G	A	SNP	KAT2A	ENST00000588759	human	ensembl	69_37n	-1	known	missense	c.196	p.H66Y	0.998	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_start_codon	KAT2A	HGNC	ENSG00000108773	21	0	0	110	35	24.14	-	-	-	A	40266620	G	A	40266620	3	1	62	1	0	0	0	0	1	0	0	0	8035	1280	45	2	511	2	KAT2A	17	40266620	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	21031430	40266620	40928590	129	3219										
STAT3	0	genome.wustl.edu	37	chr17	40468877	40468877	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgcatcaatgaatctaaagtGcggggggacatcggcaggtc	14	8	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	40468877	40468877	G	A	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	silent	c.2187	p.R729	1.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	23	0	0	54	24	30.77	-	-	-	A	40468877	G	A	40468877	2	1	62	1	0	0	0	0	0	0	0	1	15357	1306	46	4		4	STAT3	17	40468877	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	202257	40468877	40726333	130	3220										
EPN3	0	genome.wustl.edu	37	chr17	48614030	48614030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cccctggggcccccctagttCgctcatgtccgagatcgctg	11	17	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	48614030	48614030	C	T	SNP	EPN3	ENST00000268933	human	ensembl	69_37n	1	known	missense	c.113	p.S38L	1.000	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_Ubiquitin-int_motif,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283	14	0	0	75	27	26.47	-	-	-	T	48614030	C	T	48614030	3	4	62	1	0	0	0	0	1	0	0	0	5224	893	31	1	115	1	EPN3	17	48614030	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	8145153	48614030	32581180	131	3221										
ABCA6	0	genome.wustl.edu	37	chr17	67094096	67094096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gctgcccatggtgatataagGagaaatgctacatagaacca	10	8	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	67094096	67094096	G	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.3085	p.P1029A	0.981	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	107	0	0	82	13	13.68	-	-	-	C	67094096	G	C	67094096	3	2	62	1	0	0	0	0	1	0	0	0	36	1174	41	2	1836	2	ABCA6	17	67094096	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	18480066	67094096	14101114	132	3222										
KIAA0195	0	genome.wustl.edu	37	chr17	73491664	73491664	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tccaccaagtgcggccccacCtgcagaacattgacaacgtg	9	15	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	73491664	73491664	C	G	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.2884	p.L962V	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	11	0	0	43	24	35.82	-	-	-	G	73491664	C	G	73491664	3	3	62	1	0	0	0	0	1	0	0	0	8212	680	24	4	2966	4	KIAA0195	17	73491664	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	6397568	73491664	7703546	133	3223										
SLC25A10	0	genome.wustl.edu	37	chr17	79671378	79671379	+	Frame_Shift_Ins	INS	-	-	C													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gataacgcccccaaggagtaINScccccccaagatacagcagc							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	79671378	79671379	-	C	INS	SLC25A10	ENST00000541223	human	ensembl	69_37n	1	known	frame_shift_ins	c.179_180	p.K63fs	1.000:1.000	superfamily_Ribosomal_L7/L12_oligo	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,prints_Mit_uncoupling,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A10	HGNC	ENSG00000183048	12	0	0	152	123	44.73	-	-	-	C	79671379	-	C	79671378	7	5	62	1	0	1	1	0	0	0	0	0	14561	391	14	0		0	SLC25A10	17	79671378	Frame_Shift_Ins	INS	-	TCGA-A2-A0T0-01A-22D-A099-09	6179714	79671378	1523832	134	3224										
P4HB	0	genome.wustl.edu	37	chr17	79803027	79803027	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgaccccactcacgtcatcaTcccctgccccatcctggcca	5	21	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	17	79803027	79803027	T	A	SNP	P4HB	ENST00000331483	human	ensembl	69_37n	-1	known	missense	c.1439	p.D480V	0.966	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624	21	0	0	151	105	40.54	-	-	-	A	79803027	T	A	79803027	3	1	62	1	0	0	0	0	1	0	0	0	11432	1435	50	5	95	5	P4HB	17	79803027	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	131649	79803027	1392183	135	3225										
GPR108	0	genome.wustl.edu	37	chr19	6731281	6731281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gatgatgcgggtgaagtagaCgtagcagatgacctgcaggg	17	6	0	5			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	6731281	6731281	C	T	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	missense	c.1363	p.V455I	0.995	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	14	0	0	83	35	29.66	-	-	-	T	6731281	C	T	6731281	3	4	62	1	0	0	0	0	1	0	0	0	6674	536	19	1	280	1	GPR108	19	6731281	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		6731281	52397702	136	3226										
MUC16	0	genome.wustl.edu	37	chr19	9086543	9086543	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccctatgaattccacatcagGagttgtaggagatgaggtta	11	7	1	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	9086543	9086543	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.5272	p.P1758T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	107	0	0	175	93	34.7	-	-	-	T	9086543	G	T	9086543	3	4	62	1	0	0	0	0	1	0	0	0	10045	1174	41	2	38587	2	MUC16	19	9086543	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	2355262	9086543	50042440	137	3227										
OR7D2	0	genome.wustl.edu	37	chr19	9297338	9297338	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	cttcatctacagcctgaggaAcaaggatgtgaagggagccc	12	10	2	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	9297338	9297338	A	G	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.881	p.N294S	0.878	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	17	0	0	29	21	42	-	-	-	G	9297338	A	G	9297338	3	3	62	1	0	0	0	0	1	0	0	0	11292	43	2	5	883	5	OR7D2	19	9297338	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09	210795	9297338	49831645	138	3228										
ZNF560	0	genome.wustl.edu	37	chr19	9578743	9578743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggctttcccatagtcagtgcCttcaaaggatttatcttgtg	9	9	3	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	9578743	9578743	C	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.880	p.G294C	0.048	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	163	0	0	166	37	18.23	-	-	-	A	9578743	C	A	9578743	3	1	62	1	0	0	0	0	1	0	0	0	18087	681	24	4	1496	4	ZNF560	19	9578743	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09	281405	9578743	49550240	139	3229										
SMARCA4	0	genome.wustl.edu	37	chr19	11170528	11170528	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcgaggagagtgaggaggagGaagagggcgaggaggaaggc	24	3	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	11170528	11170528	G	T	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	nonsense	c.4831	p.E1611*	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	8	0	0	62	50	44.64	-	-	-	T	11170528	G	T	11170528	4	4	62	1	0	0	0	0	0	1	0	0	14859	1175	41	2	4970	2	SMARCA4	19	11170528	Nonsense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1591785	11170528	47958455	140	3230										
CYP4F2	0	genome.wustl.edu	37	chr19	15990642	15990642	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ggcgggagatgaccgggactGggggatgcagccgcaggctc	20	10	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	15990642	15990642	G	C	SNP	CYP4F2	ENST00000221700	human	ensembl	69_37n	-1	known	missense	c.1181	p.P394R	0.992	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	20	0	0	171	41	19.34	-	-	-	C	15990642	G	C	15990642	3	2	62	1	0	0	0	0	1	0	0	0	4219	1348	47	4	397	4	CYP4F2	19	15990642	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	4820114	15990642	43138341	141	3231										
CYP4F11	0	genome.wustl.edu	37	chr19	16034822	16034822	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	caggaagtccgtgtgcaagaGaatctgctggtttctctttt	11	8	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	16034822	16034822	G	C	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.718	p.L240V	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	36	0	0	99	29	22.48	-	-	-	C	16034822	G	C	16034822	3	2	62	1	0	0	0	0	1	0	0	0	4217	942	33	2	884	2	CYP4F11	19	16034822	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	44180	16034822	43094161	142	3232										
ZNF101	0	genome.wustl.edu	37	chr19	19790274	19790274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ccccagtagtggtgcacggcGcacagtaacaccaactcgaa	10	14	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	19790274	19790274	G	A	SNP	ZNF101	ENST00000318110	human	ensembl	69_37n	1	known	missense	c.476	p.R159H	0.935	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896	40	0	0	104	21	16.8	-	-	-	A	19790274	G	A	19790274	3	1	62	1	0	0	0	0	1	0	0	0	17810	1087	38	1	490	1	ZNF101	19	19790274	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	3755452	19790274	39338709	143	3233										
ZNF708	0	genome.wustl.edu	37	chr19	21477270	21477271	+	Frame_Shift_Ins	INS	-	-	T													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	attctttacatttgaaaggaINSttttttccagtatgtcttat							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	21477270	21477271	-	T	INS	ZNF708	ENST00000356929	human	ensembl	69_37n	-1	known	frame_shift_ins	c.498_497	p.N166fs	0.028:0.884	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141	341	0	0	58	14	19.44	-	-	-	T	21477271	-	T	21477270	7	5	62	1	0	1	1	0	0	0	0	0	18208	330	12	0	1197	0	ZNF708	19	21477270	Frame_Shift_Ins	INS	-	TCGA-A2-A0T0-01A-22D-A099-09	1686996	21477270	37651713	144	3234										
ZNF528	0	genome.wustl.edu	37	chr19	52918378	52918378	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ttttttctttctgttttagaGaggagctctaaattgggaag	10	4	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	19	52918378	52918378	G	C	SNP	ZNF528	ENST00000360465	human	ensembl	69_37n	1	known	missense	c.273	p.E91D	0.021	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555	117	0	0	24	8	25	-	-	-	C	52918378	G	C	52918378	3	2	62	1	0	0	0	0	1	0	0	0	18065	956	33	2	287	2	ZNF528	19	52918378	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	31441108	52918378	6210605	145	3235										
RAB22A	0	genome.wustl.edu	37	chr20	56929271	56929271	+	Missense_Mutation	SNP	A	A	C													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tattcatgcaatttttgtagAgaccagcgcaaaaaacgcga							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	20	56929271	56929271	A	C	SNP	RAB22A	ENST00000244040	human	ensembl	69_37n	1	known	missense	c.437	p.E146A	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB22A	HGNC	ENSG00000124209	116	0	0	137	38	21.71	-	-	-	C	56929271	A	C	56929271	3	2	62	1	0	0	0	0	1	0	0	0	12992	304	11	5	459	5	RAB22A	20	56929271	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09		56929271	6096249	146	3236	26	2								
RAB22A	0	genome.wustl.edu	37	chr20	56929272	56929272	+	Missense_Mutation	SNP	G	G	T													0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	attcatgcaatttttgtagaGaccagcgcaaaaaacgcgat							TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	20	56929272	56929272	G	T	SNP	RAB22A	ENST00000244040	human	ensembl	69_37n	1	known	missense	c.438	p.E146D	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB22A	HGNC	ENSG00000124209	115	0	0	135	38	21.97	-	-	-	T	56929272	G	T	56929272	3	4	62	1	0	0	0	0	1	0	0	0	12992	933	33	2	460	2	RAB22A	20	56929272	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	1	56929272	6096248	147	3237	26	2								
USP25	0	genome.wustl.edu	37	chr21	17205712	17205712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gccccttgttggtatagaaaCattaccaccggatttgagag	10	9	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	21	17205712	17205712	C	A	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.2039	p.T680K	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	113	0	0	27	10	27.03	-	-	-	A	17205712	C	A	17205712	3	1	62	1	0	0	0	0	1	0	0	0	17153	478	17	4	2105	4	USP25	21	17205712	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		17205712	30924183	148	3238										
TTC3	0	genome.wustl.edu	37	chr21	38567987	38567987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcctcacaggttcatcccgaGttactccctgagtcttcagg	8	14	4	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	21	38567987	38567987	G	C	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.5229	p.E1743D	0.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	11	0	0	57	24	29.63	-	-	-	C	38567987	G	C	38567987	3	2	62	1	0	0	0	0	1	0	0	0	16794	1020	36	4	5391	4	TTC3	21	38567987	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	21362275	38567987	9561908	149	3239										
MX1	0	genome.wustl.edu	37	chr21	42824598	42824598	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gagagagaaggtgagaagctGatccgcctccacttccagat	12	10	0	5			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	21	42824598	42824598	G	A	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	silent	c.1560	p.L520	0.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	45	0	0	75	19	20.21	-	-	-	A	42824598	G	A	42824598	2	1	62	1	0	0	0	0	0	0	0	1	10069	1277	45	2		2	MX1	21	42824598	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	4256611	42824598	5305297	150	3240										
ADSL	0	genome.wustl.edu	37	chr22	40746017	40746017	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tattcaccttggtgctacttCttgctatgttggagacaata	8	8	2	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	22	40746017	40746017	C	A	SNP	ADSL	ENST00000454266	human	ensembl	69_37n	1	known	missense	c.335	p.S112Y	1.000	superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Lyase1_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,prints_D_crystallin,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900	109	0	0	63	21	25	-	-	-	A	40746017	C	A	40746017	3	1	62	1	0	0	0	0	1	0	0	0	346	913	32	2	341	2	ADSL	22	40746017	Missense_Mutation	SNP	C	TCGA-A2-A0T0-01A-22D-A099-09		40746017	10558549	151	3241										
PHF21B	0	genome.wustl.edu	37	chr22	45312307	45312307	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcactgctcagcggagaggcGagggcggcgggctcggcgag	21	11	1	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	22	45312307	45312307	G	A	SNP	PHF21B	ENST00000313237	human	ensembl	69_37n	-1	known	silent	c.417	p.L139	0.028	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	16	0	0	47	25	34.72	-	-	-	A	45312307	G	A	45312307	2	1	62	1	0	0	0	0	0	0	0	1	11908	1045	37	1		1	PHF21B	22	45312307	Silent	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	4566290	45312307	5992259	152	3242										
TRABD	0	genome.wustl.edu	37	chr22	50632861	50632861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gcactgtgacccagttggtgGctgaggacgggagcagggtg	19	8	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	22	50632861	50632861	G	T	SNP	TRABD	ENST00000303434	human	ensembl	69_37n	1	known	missense	c.205	p.A69S	0.994	NULL	pfam_Pheromone_shutdown_TraB	-	no_errors	TRABD	HGNC	ENSG00000170638	12	0	0	102	29	21.97	-	-	-	T	50632861	G	T	50632861	3	4	62	1	0	0	0	0	1	0	0	0	16531	1203	42	4	215	4	TRABD	22	50632861	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	5320554	50632861	671705	153	3243										
CXorf22	0	genome.wustl.edu	37	chrX	35985882	35985882	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gtgaagagccagtgaaggatAtgctattagcctttcccaat	10	8	0	3			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	X	35985882	35985882	A	G	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.1747	p.M583V	0.001	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	54	0	0	42	17	28.81	-	-	-	G	35985882	A	G	35985882	3	3	62	1	0	0	0	0	1	0	0	0	4133	449	16	5	1785	5	CXorf22	23	35985882	Missense_Mutation	SNP	A	TCGA-A2-A0T0-01A-22D-A099-09		35985882	119284678	154	3244										
ZNF81	0	genome.wustl.edu	37	chrX	47774342	47774342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	gatgggaaatttggaattaaGccttcccagaggagaatttc	11	6	0	2			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	X	47774342	47774342	G	C	SNP	ZNF81	ENST00000338637	human	ensembl	69_37n	1	known	missense	c.297	p.K99N	0.112	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779	33	0	0	28	6	17.65	-	-	-	C	47774342	G	C	47774342	3	2	62	1	0	0	0	0	1	0	0	0	18267	962	34	4	311	4	ZNF81	23	47774342	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	11788460	47774342	107496218	155	3245										
HDAC6	0	genome.wustl.edu	37	chrX	48682346	48682346	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	ctccaggccatattttatgcTgtgacaccactgccctggtg	9	13	0	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	X	48682346	48682346	T	C	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	silent	c.3360	p.A1120	0.885	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	41	0	0	139	40	22.35	-	-	-	C	48682346	T	C	48682346	2	2	62	1	0	0	0	0	0	0	0	1	7062	1567	55	5		5	HDAC6	23	48682346	Silent	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	908004	48682346	106588214	156	3246										
ARMCX1	0	genome.wustl.edu	37	chrX	100807921	100807921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tcccagctataccatgggccGcactcgggaagctggctgcg	13	14	0	0			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	X	100807921	100807921	G	A	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.8	p.R3H	0.998	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	22	0	0	66	41	38.32	-	-	-	A	100807921	G	A	100807921	3	1	62	1	0	0	0	0	1	0	0	0	963	1087	38	1	10	1	ARMCX1	23	100807921	Missense_Mutation	SNP	G	TCGA-A2-A0T0-01A-22D-A099-09	52125575	100807921	54462639	157	3247										
CDR1	0	genome.wustl.edu	37	chrX	139866173	139866173	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	15	0.289115942297445	1.43454900683816	1.91273200911755	0.956366004558776	0.183671546964095	0.739221287781419	0	tgtcttccagaaaatccttgTcttcccttaaatctatagct	4	11	3	1			TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3c107ce4-a6ac-469b-b1c0-cd86674b5766	94629e5b-195d-495b-bfa5-e10c46930a47	X	139866173	139866173	T	G	SNP	CDR1	ENST00000370532	human	ensembl	69_37n	-1	known	missense	c.359	p.D120A	0.017	NULL	NULL	-	no_errors	CDR1	HGNC	ENSG00000184258	147	1	0.68	79	38	32.48	-	-	-	G	139866173	T	G	139866173	3	3	62	1	0	0	0	0	1	0	0	0	3200	1667	58	5	433	5	CDR1	23	139866173	Missense_Mutation	SNP	T	TCGA-A2-A0T0-01A-22D-A099-09	39058252	139866173	15404387	158	3248										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	124	0	0	27	3	10	-	-	-	A	12980232	G	A	12980232	2	1	63	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-A2-A0T1-01A-21D-A099-09		12980232	236270389	1	3249										
INSIG2	0	genome.wustl.edu	37	chr2	118864382	118864382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	tatccattggactgtggtggActtttgatagatctagaagt	11	5	1	3			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	2	118864382	118864382	A	G	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	missense	c.439	p.T147A	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	477	2	0.42	233	47	16.79	-	-	-	G	118864382	A	G	118864382	3	3	63	1	0	0	0	0	1	0	0	0	7820	275	10	5	449	5	INSIG2	2	118864382	Missense_Mutation	SNP	A	TCGA-A2-A0T1-01A-21D-A099-09		118864382	124334991	2	3250										
ZNF142	0	genome.wustl.edu	37	chr2	219509721	219509721	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	atcagagacttgccctgatgCcgcagcttgtggctgctcag	12	12	2	2			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	2	219509721	219509721	C	T	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	silent	c.1518	p.R506	0.884	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	73	0	0	10	6	37.5	-	-	-	T	219509721	C	T	219509721	2	4	63	1	0	0	0	0	0	0	0	1	17827	726	26	4		4	ZNF142	2	219509721	Silent	SNP	C	TCGA-A2-A0T1-01A-21D-A099-09	100645339	219509721	23689652	3	3251										
HLTF	0	genome.wustl.edu	37	chr3	148750037	148750037	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	attaatgttctgatttcattAattttggcttgtttcatttc	5	5	3	1			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	3	148750037	148750037	A	C	SNP	HLTF	ENST00000310053	human	ensembl	69_37n	-1	known	missense	c.3000	p.I1000M	0.848	NULL	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794	341	0	0	260	104	28.57	-	-	-	C	148750037	A	C	148750037	3	2	63	1	0	0	0	0	1	0	0	0	7266	358	13	5	33	5	HLTF	3	148750037	Missense_Mutation	SNP	A	TCGA-A2-A0T1-01A-21D-A099-09		148750037	49272393	4	3252										
HIST1H2BK	0	genome.wustl.edu	37	chr6	27114334	27114334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	cgagcgcttgttgtaatgcgCcaggcgggaagcctcacccg	14	13	1	0			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	6	27114334	27114334	C	T	SNP	HIST1H2BK	ENST00000356950	human	ensembl	69_37n	-1	known	missense	c.244	p.A82T	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BK	HGNC	ENSG00000197903	197	0	0	50	10	16.67	-	-	-	T	27114334	C	T	27114334	3	4	63	1	0	0	0	0	1	0	0	0	7201	739	26	4	140	4	HIST1H2BK	6	27114334	Missense_Mutation	SNP	C	TCGA-A2-A0T1-01A-21D-A099-09		27114334	144000733	5	3253										
DOCK4	0	genome.wustl.edu	37	chr7	111629136	111629136	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	tcatccggtcgtgggtgaggTggcccaccagcacctgccgc	14	15	1	1			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	7	111629136	111629136	T	A	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.398	p.H133L	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	149	0	0	20	7	25.93	-	-	-	A	111629136	T	A	111629136	3	1	63	1	0	0	0	0	1	0	0	0	4724	1696	59	5	5690	5	DOCK4	7	111629136	Missense_Mutation	SNP	T	TCGA-A2-A0T1-01A-21D-A099-09		111629136	47509527	6	3254										
SPTAN1	0	genome.wustl.edu	37	chr9	131380311	131380311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	tgtccgatgacaacaccatcGggaaagaggagatccagcag	12	10	0	3			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	9	131380311	131380311	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.5524	p.G1842R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	92	0	0	10	5	33.33	-	-	-	A	131380311	G	A	131380311	3	1	63	1	0	0	0	0	1	0	0	0	15208	1116	39	1	5690	1	SPTAN1	9	131380311	Missense_Mutation	SNP	G	TCGA-A2-A0T1-01A-21D-A099-09		131380311	9833120	7	3255										
FAM160A2	0	genome.wustl.edu	37	chr11	6232828	6232828	+	Frame_Shift_Del	DEL	G	G	-													0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	cgaggtgacggcatgagcctGggagatggcagccaactcct							TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	11	6232828	6232828	G	-	DEL	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	frame_shift_del	c.2869	p.Q957fs	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	57	0	0	11	2	15.38	-	-	-	-	6232828	G	-	6232828	7	5	63	1	0	1	0	1	0	0	0	0	5509	1357	47	0	95	0	FAM160A2	11	6232828	Frame_Shift_Del	DEL	G	TCGA-A2-A0T1-01A-21D-A099-09		6232828	128773688	8	3256										
CACNA1C	0	genome.wustl.edu	37	chr12	2714892	2714892	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	atccggaccatcgggaacatCgtgattgtcaccaccctgct	9	14	1	1			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	12	2714892	2714892	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.3096	p.I1032	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	306	0	0	66	8	10.81	-	-	-	T	2714892	C	T	2714892	2	4	63	1	0	0	0	0	0	0	0	1	2565	874	31	1		1	CACNA1C	12	2714892	Silent	SNP	C	TCGA-A2-A0T1-01A-21D-A099-09		2714892	131137003	9	3257										
RPLP0	0	genome.wustl.edu	37	chr12	120636935	120636935	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	ccttaccttattggccagcaAcatgtccctgatctcagtga	7	13	1	2			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	12	120636935	120636935	A	G	SNP	RPLP0	ENST00000228306	human	ensembl	69_37n	-1	known	silent	c.304	p.L102	1.000	pfam_Ribosomal_L10/acidic_P0	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S	-	no_errors	RPLP0	HGNC	ENSG00000089157	233	0	0	82	17	17.17	-	-	-	G	120636935	A	G	120636935	2	3	63	1	0	0	0	0	0	0	0	1	13690	40	2	5		5	RPLP0	12	120636935	Silent	SNP	A	TCGA-A2-A0T1-01A-21D-A099-09	117922043	120636935	13214960	10	3258										
SPTB	0	genome.wustl.edu	37	chr14	65264479	65264479	+	Frame_Shift_Del	DEL	G	G	-													0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	agacactagtttcccatcgtGgggtgtgtacactttctgat							TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	14	65264479	65264479	G	-	DEL	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	frame_shift_del	c.1150	p.H384fs	0.047	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	206	0	0	108	27	19.85	-	-	-	-	65264479	G	-	65264479	7	5	63	1	0	1	0	1	0	0	0	0	15209	1348	47	0	6013	0	SPTB	14	65264479	Frame_Shift_Del	DEL	G	TCGA-A2-A0T1-01A-21D-A099-09		65264479	42085061	11	3259										
MAP3K9	0	genome.wustl.edu	37	chr14	71197420	71197420	+	Frame_Shift_Del	DEL	A	A	-													0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	cagccgttgccggttggcagAaggacgcggccgaggcagaa							TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	14	71197420	71197420	A	-	DEL	MAP3K9	ENST00000555993	human	ensembl	69_37n	-1	known	frame_shift_del	c.3034	p.S1012fs	0.995	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	59	0	0	13	2	13.33	-	-	-	-	71197420	A	-	71197420	7	5	63	1	0	1	0	1	0	0	0	0	9328	246	9	0	326	0	MAP3K9	14	71197420	Frame_Shift_Del	DEL	A	TCGA-A2-A0T1-01A-21D-A099-09	5932941	71197420	36152120	12	3260										
NPTN	0	genome.wustl.edu	37	chr15	73889543	73889544	+	Frame_Shift_Ins	INS	-	-	A													0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	taggcggtgtttacggtgacINSacggcgcttccgagcaccgt							TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	15	73889543	73889544	-	A	INS	NPTN	ENST00000345330	human	ensembl	69_37n	-1	known	frame_shift_ins	c.259_258	p.V86fs	1.000:1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_MFS_dom_general_subst_transpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NPTN	HGNC	ENSG00000156642	103	0	0	14	2	12.5	-	-	-	A	73889544	-	A	73889543	7	5	63	1	0	1	1	0	0	0	0	0	10674	478	17	0	965	0	NPTN	15	73889543	Frame_Shift_Ins	INS	-	TCGA-A2-A0T1-01A-21D-A099-09		73889543	28641849	13	3261										
C17orf97	0	genome.wustl.edu	37	chr17	263442	263442	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	agggcttccaccccgaccctGaggccctcaagggtttccac	10	17	1	1			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	17	263442	263442	G	A	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	missense	c.808	p.E270K	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	28	0	0	4	3	42.86	-	-	-	A	263442	G	A	263442	3	1	63	1	0	0	0	0	1	0	0	0	1909	1291	45	2		2	C17orf97	17	263442	Missense_Mutation	SNP	G	TCGA-A2-A0T1-01A-21D-A099-09		263442	80931768	14	3262										
TP53	0	genome.wustl.edu	37	chr17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	cccaggacaggcacaaacacGcacctcaaagctgttccgtc	8	16	1	0			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	146	0	0	39	9	18.75	-	-	-	A	7577121	G	A	7577121	3	1	63	1	0	0	0	0	1	0	0	0	16477	1087	38	1	469	1	TP53	17	7577121	Missense_Mutation	SNP	G	TCGA-A2-A0T1-01A-21D-A099-09	7313679	7577121	73618089	15	3263										
C17orf53	0	genome.wustl.edu	37	chr17	42226188	42226188	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.543506426110057	2.225	NA	2.225	0.333333333333333	0.930327025915261	0	ggattatttcctcggataccCttacaaccgcaagctccagt	7	13	0	0			TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9515373a-d982-45fa-b8f9-363f9ba8649f	878b308b-e9d9-48ed-8654-86971ef43f22	17	42226188	42226188	C	T	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	silent	c.1017	p.P339	0.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319	209	0	0	120	24	16.67	-	-	-	T	42226188	C	T	42226188	2	4	63	1	0	0	0	0	0	0	0	1	1877	668	24	4		4	C17orf53	17	42226188	Silent	SNP	C	TCGA-A2-A0T1-01A-21D-A099-09	34649067	42226188	38969022	16	3264										
EIF2C1	0	genome.wustl.edu	37	chr1	36381040	36381040	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gatcattgaagacttgtcctAcatggtgcgtgagctcctca	10	10	2	3			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	1	36381040	36381040	A	G	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.1925	p.Y642C	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	43	0	0	163	100	37.88	-	-	-	G	36381040	A	G	36381040	3	3	64	1	0	0	0	0	1	0	0	0	5040	391	14	5	1983	5	EIF2C1	1	36381040	Missense_Mutation	SNP	A	TCGA-A2-A0T2-01A-11W-A097-09		36381040	212869581	1	3265										
CHRNB2	0	genome.wustl.edu	37	chr1	154543819	154543819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	agaactgcaccatgaagttcCgttcgtggacctacgaccgc	10	13	0	2			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	1	154543819	154543819	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	missense	c.520	p.R174C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	56	0	0	74	22	22.92	-	-	-	T	154543819	C	T	154543819	3	4	64	1	0	0	0	0	1	0	0	0	3420	652	23	1	538	1	CHRNB2	1	154543819	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09	118162779	154543819	94706802	2	3266										
QPCT	0	genome.wustl.edu	37	chr2	37586965	37586966	+	Frame_Shift_Ins	INS	-	-	G													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gtgcaatgatgttggaacttINSgctcgtgccttagacaagaa							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	2	37586965	37586966	-	G	INS	QPCT	ENST00000338415	human	ensembl	69_37n	1	known	frame_shift_ins	c.510_511	p.A170fs	0.561:1.000	pfam_Peptidase_M28	pfam_Peptidase_M28	-	no_errors	QPCT	HGNC	ENSG00000115828	39	0	0	111	69	38.33	-	-	-	G	37586966	-	G	37586965	7	5	64	1	0	1	1	0	0	0	0	0	12957	1799	63	0	520	0	QPCT	2	37586965	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		37586965	205612408	3	3267										
P4HTM	0	genome.wustl.edu	37	chr3	49043192	49043193	+	Frame_Shift_Ins	INS	-	-	C													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	aactggggacctgctcagtgINSccccccctgccttacagcta							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	49043192	49043193	-	C	INS	P4HTM	ENST00000343546	human	ensembl	69_37n	1	known	frame_shift_ins	c.1239_1240	p.L415fs	0.017:0.124	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	59	0	0	23	3	11.54	-	-	-	C	49043193	-	C	49043192	7	5	64	1	0	1	1	0	0	0	0	0	11433	1306	46	0	1265	0	P4HTM	3	49043192	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		49043192	148979238	4	3268										
ABHD6	0	genome.wustl.edu	37	chr3	58260470	58260470	+	Frame_Shift_Del	DEL	C	C	-													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gtggagaagattcccttgatCccgtctaccccagaagagat							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	58260470	58260470	C	-	DEL	ABHD6	ENST00000295962	human	ensembl	69_37n	1	known	frame_shift_del	c.609	p.P204fs	1.000	pfam_AB_hydrolase_1,pfam_Ndr	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686	49	0	0	28	48	63.16	-	-	-	-	58260470	C	-	58260470	7	5	64	1	0	1	0	1	0	0	0	0	86	845	30	0	627	0	ABHD6	3	58260470	Frame_Shift_Del	DEL	C	TCGA-A2-A0T2-01A-11W-A097-09	9217278	58260470	139761960	5	3269										
ETV5	0	genome.wustl.edu	37	chr3	185823093	185823093	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	catcaccagaaaggtacttaCggttatcagactgaaaatct	7	9	3	3			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	185823093	185823093	C	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	splice_site	c.358+1	e5+1	1.000	-	-	-	no_errors	ETV5	HGNC	ENSG00000244405	84	0	0	80	46	36.51	-	-	-	T	185823093	C	T	185823093	5	4	64	1	0	0	0	0	0	0	1	0	5319	550	19	1	1335	1	ETV5	3	185823093	Splice_Site	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09	127562623	185823093	12199337	6	3270										
RBM47	0	genome.wustl.edu	37	chr4	40440780	40440781	+	Frame_Shift_Ins	INS	-	-	A													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gttctcttgcaccatgctgtINSagcccgtgcgctccatcagc							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	40440780	40440781	-	A	INS	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	frame_shift_ins	c.131_130	p.Y44fs	1.000:1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	10	0	0	0	5	100	-	-	-	A	40440781	-	A	40440780	7	5	64	1	0	1	1	0	0	0	0	0	13224	1638	57	0	1666	0	RBM47	4	40440780	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		40440780	150713496	7	3271										
NIPAL1	0	genome.wustl.edu	37	chr4	48037625	48037625	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	actgtgatctccttggtgctGattttgattgtggctcccaa	10	9	1	3			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	48037625	48037625	G	A	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	1	known	silent	c.669	p.L223	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	41	0	0	56	101	64.33	-	-	-	A	48037625	G	A	48037625	2	1	64	1	0	0	0	0	0	0	0	1	10496	1277	45	2		2	NIPAL1	4	48037625	Silent	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09	7596845	48037625	143116651	8	3272										
KIAA1211	0	genome.wustl.edu	37	chr4	57180616	57180616	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gagcgcgagcgcctggaggcGgaggaggagcgaaggcgtct	21	9	1	0			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	57180616	57180616	G	A	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	silent	c.948	p.A316	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	36	0	0	8	26	76.47	-	-	-	A	57180616	G	A	57180616	2	1	64	1	0	0	0	0	0	0	0	1	8267	1103	39	1		1	KIAA1211	4	57180616	Silent	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09	9142991	57180616	133973660	9	3273										
EGR1	0	genome.wustl.edu	37	chr5	137803131	137803132	+	Frame_Shift_Ins	INS	-	-	C													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ccaaccggcccagcaagacgINScccccccacgaacgccctta							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	5	137803131	137803132	-	C	INS	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	frame_shift_ins	c.993_994	p.H333fs	0.502:1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	64	0	0	20	4	16.67	-	-	-	C	137803132	-	C	137803131	7	5	64	1	0	1	1	0	0	0	0	0	5006	1074	38	0	999	0	EGR1	5	137803131	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		137803131	43112129	10	3274										
MBOAT1	0	genome.wustl.edu	37	chr6	20152998	20152998	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	agctggcataccacaaaattCacctgtggcaggggaagaga	12	9	1	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	6	20152998	20152998	C	T	SNP	MBOAT1	ENST00000324607	human	ensembl	69_37n	-1	known	silent	c.102	p.V34	1.000	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	118	0	0	174	120	40.68	-	-	-	T	20152998	C	T	20152998	2	4	64	1	0	0	0	0	0	0	0	1	9427	813	29	2		2	MBOAT1	6	20152998	Silent	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09		20152998	150962069	11	3275										
NCR2	0	genome.wustl.edu	37	chr6	41318437	41318437	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ggggacatatggtggaaaacCatgatggagctcaggagcct	15	7	1	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	6	41318437	41318437	C	G	SNP	NCR2	ENST00000373086	human	ensembl	69_37n	1	known	missense	c.809	p.P270R	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NCR2	HGNC	ENSG00000096264	77	0	0	83	60	41.96	-	-	-	G	41318437	C	G	41318437	3	3	64	1	0	0	0	0	1	0	0	0	10310	581	21	4	684	4	NCR2	6	41318437	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09	21165439	41318437	129796630	12	3276										
ACTL6B	0	genome.wustl.edu	37	chr7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	tctccttcttcttccagtttINSgggggggcaccctcccggac							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	28	0	0	45	7	13.46	-	-	-	G	100245131	-	G	100245130	7	5	64	1	0	1	1	0	0	0	0	0	199	1799	63	0	612	0	ACTL6B	7	100245130	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		100245130	58893533	13	3277										
WASL	0	genome.wustl.edu	37	chr7	123335910	123335910	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	tttggatcccaaccaacatgTccaatgtgcctgaagtagaa	8	10	0	2			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	7	123335910	123335910	T	C	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	silent	c.639	p.G213	1.000	pfam_PAK_box_Rho-bd,superfamily_WASP_C,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	69	0	0	138	76	35.51	-	-	-	C	123335910	T	C	123335910	2	2	64	1	0	0	0	0	0	0	0	1	17353	1654	58	5		5	WASL	7	123335910	Silent	SNP	T	TCGA-A2-A0T2-01A-11W-A097-09	23090780	123335910	35802753	14	3278										
PTK2B	0	genome.wustl.edu	37	chr8	27315867	27315867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gcagagctcatcaacaagatGcggctggcacagcagaacgc	12	12	2	3			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	8	27315867	27315867	G	A	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	missense	c.2871	p.M957I	1.000	pfam_Focal_adhesion_kin_target_dom,superfamily_Focal_adhesion_kin_target_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	31	0	0	38	23	37.7	-	-	-	A	27315867	G	A	27315867	3	1	64	1	0	0	0	0	1	0	0	0	12844	1319	46	4	2989	4	PTK2B	8	27315867	Missense_Mutation	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09		27315867	119048155	15	3279										
EYA1	0	genome.wustl.edu	37	chr8	72211886	72211886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	aaattacctgctgtgaactaTtaaatccagaggaatttgtg	8	6	0	2			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	8	72211886	72211886	T	C	SNP	EYA1	ENST00000340726	human	ensembl	69_37n	-1	known	missense	c.626	p.N209S	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313	90	0	0	329	227	40.83	-	-	-	C	72211886	T	C	72211886	3	2	64	1	0	0	0	0	1	0	0	0	5365	1493	52	5	1196	5	EYA1	8	72211886	Missense_Mutation	SNP	T	TCGA-A2-A0T2-01A-11W-A097-09	44896019	72211886	74152136	16	3280										
DENND4C	0	genome.wustl.edu	37	chr9	19296154	19296154	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	caaatgcatttgtttactctCacactggcctttttttgaag	6	9	1	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	9	19296154	19296154	C	T	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.242	p.S81L	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	83	0	0	334	233	41.02	-	-	-	T	19296154	C	T	19296154	3	4	64	1	0	0	0	0	1	0	0	0	4471	838	29	2	248	2	DENND4C	9	19296154	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09		19296154	121917277	17	3281										
AGAP6	0	genome.wustl.edu	37	chr10	51769058	51769058	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	accagccccaagctcaacccGcccccctctcctcatgctaa	4	22	3	0			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	10	51769058	51769058	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	69_37n	1	known	silent	c.1173	p.P391	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149	21	0	0	8	11	47.83	-	-	-	A	51769058	G	A	51769058	2	1	64	1	0	0	0	0	0	0	0	1	372	1074	38	1		1	AGAP6	10	51769058	Silent	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09		51769058	83765689	18	3282										
FANCF	0	genome.wustl.edu	37	chr11	22646798	22646798	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ccacaggctgctgagaaaccTggcgggacgctccgcttcgg	14	14	0	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	11	22646798	22646798	T	A	SNP	FANCF	ENST00000327470	human	ensembl	69_37n	-1	known	missense	c.559	p.R187W	0.000	NULL	NULL	-	no_errors	FANCF	HGNC	ENSG00000183161	20	0	0	26	7	21.21	-	-	-	A	22646798	T	A	22646798	3	1	64	1	0	0	0	0	1	0	0	0	5713	1579	55	5	569	5	FANCF	11	22646798	Missense_Mutation	SNP	T	TCGA-A2-A0T2-01A-11W-A097-09		22646798	112359718	19	3283										
ZNF641	0	genome.wustl.edu	37	chr12	48741042	48741043	+	Frame_Shift_Ins	INS	-	-	CG													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	agcagagctcacctgtgatcINScagccgcaagaagtgcagct							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	12	48741042	48741043	-	CG	INS	ZNF641	ENST00000301042	human	ensembl	69_37n	-1	known	frame_shift_ins	c.311_310	p.G104fs	1.000:0.984	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528	49	0	0	6	16	72.73	-	-	-	CG	48741043	-	CG	48741042	7	5	64	1	0	1	1	0	0	0	0	0	18153	855	30	0	1124	0	ZNF641	12	48741042	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		48741042	85110853	20	3284										
SLC39A5	0	genome.wustl.edu	37	chr12	56630189	56630189	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	tcctatttcagagatgctgcAggcgaaaacgaaggaatctc	10	9	2	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	12	56630189	56630189	A	C	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	silent	c.955	p.R319	0.875	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	70	0	0	16	36	69.23	-	-	-	C	56630189	A	C	56630189	2	2	64	1	0	0	0	0	0	0	0	1	14710	179	7	5		5	SLC39A5	12	56630189	Silent	SNP	A	TCGA-A2-A0T2-01A-11W-A097-09	7889147	56630189	77221706	21	3285										
PROZ	0	genome.wustl.edu	37	chr13	113814455	113814455	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	gaagaaatctgtgtctatgaAgaagcaagagaagtgtttga	12	3	2	5			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	13	113814455	113814455	A	C	SNP	PROZ	ENST00000375547	human	ensembl	69_37n	1	known	missense	c.198	p.E66D	0.996	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Peptidase_S1_S6,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROZ	HGNC	ENSG00000126231	57	0	0	12	19	61.29	-	-	-	C	113814455	A	C	113814455	3	2	64	1	0	0	0	0	1	0	0	0	12643	69	3	5	204	5	PROZ	13	113814455	Missense_Mutation	SNP	A	TCGA-A2-A0T2-01A-11W-A097-09		113814455	1355423	22	3286										
RYR3	0	genome.wustl.edu	37	chr15	34151902	34151902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	acattacctttttcttcttcGtcattgtcatcttgctggcc	5	12	5	0			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	15	34151902	34151902	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.14269	p.V4757I	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	196	0	0	274	478	63.56	-	-	-	A	34151902	G	A	34151902	3	1	64	1	0	0	0	0	1	0	0	0	13856	1145	40	1	14667	1	RYR3	15	34151902	Missense_Mutation	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09		34151902	68379490	23	3287										
NPRL3	0	genome.wustl.edu	37	chr16	136809	136809	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	atgagcagctgggagcgccgCgtgttctcgttgtacataat	13	9	1	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	16	136809	136809	C	G	SNP	NPRL3	ENST00000399953	human	ensembl	69_37n	-1	known	silent	c.1602	p.T534	0.340	NULL	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148	64	0	0	19	21	52.5	-	-	-	G	136809	C	G	136809	2	3	64	1	0	0	0	0	0	0	0	1	10671	755	27	3		3	NPRL3	16	136809	Silent	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09		136809	90217944	24	3288										
ATP2A1	0	genome.wustl.edu	37	chr16	28909621	28909621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	caccacccgggtgccactgaCggggccggtgaaggaaaaga	15	12	0	3			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	16	28909621	28909621	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.1613	p.T538M	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	52	0	0	43	37	46.25	-	-	-	T	28909621	C	T	28909621	3	4	64	1	0	0	0	0	1	0	0	0	1140	536	19	1	1667	1	ATP2A1	16	28909621	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09	28772812	28909621	61445132	25	3289										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	95	0	0	180	394	68.52	-	-	-	C	7578190	T	C	7578190	3	2	64	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-A2-A0T2-01A-11W-A097-09		7578190	73617020	26	3290										
FLCN	0	genome.wustl.edu	37	chr17	17119708	17119709	+	Frame_Shift_Ins	INS	-	-	G													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	cgcacctgaggagagcacgtINSggggggggatctgcacgtgc							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	17119708	17119709	-	G	INS	FLCN	ENST00000285071	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.H429fs	1.000:1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803	54	0	0	13	4	23.53	-	-	-	G	17119709	-	G	17119708	7	5	64	1	0	1	1	0	0	0	0	0	5967	1696	59	0	469	0	FLCN	17	17119708	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09	9541518	17119708	64075502	27	3291										
ABCA9	0	genome.wustl.edu	37	chr17	67017883	67017883	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	tctttcttattttttcttacCtgattcatcaatagttgatt	3	7	5	2			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	67017883	67017883	C	G	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.2401	p.D801H	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	49	0	0	36	90	71.43	-	-	-	G	67017883	C	G	67017883	3	3	64	1	0	0	0	0	1	0	0	0	39	695	24	4	2561	4	ABCA9	17	67017883	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09	49898175	67017883	14177327	28	3292										
PLEKHG2	0	genome.wustl.edu	37	chr19	39908303	39908303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ggtacatcaacgacatgaagCgcaagcaggagcatgcagcg	13	10	1	1			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	39908303	39908303	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.853	p.R285C	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	37	0	0	31	19	38	-	-	-	T	39908303	C	T	39908303	3	4	64	1	0	0	0	0	1	0	0	0	12143	768	27	1	879	1	PLEKHG2	19	39908303	Missense_Mutation	SNP	C	TCGA-A2-A0T2-01A-11W-A097-09		39908303	19220680	29	3293										
RPS9	0	genome.wustl.edu	37	chr19	54710423	54710424	+	Frame_Shift_Ins	INS	-	-	TT													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ccctatctcctatgcagcccINStcggaggtgatgggtgtgaa							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	54710423	54710424	-	TT	INS	RPS9	ENST00000436445	human	ensembl	69_37n	1	known	frame_shift_ins	c.410_411	p.R138fs	0.940:0.759	NULL	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889	15	0	0	33	10	23.26	-	-	-	TT	54710424	-	TT	54710423	7	5	64	1	0	1	1	0	0	0	0	0	13748	696	24	0		0	RPS9	19	54710423	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09	14802120	54710423	4418560	30	3294										
ZNF773	0	genome.wustl.edu	37	chr19	58017763	58017763	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	aaggctgaggcagctgctgaGcagagtgcttctgtagaagt	15	7	1	4			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	58017763	58017763	G	A	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	1	known	silent	c.300	p.E100	0.050	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	67	0	0	199	132	39.76	-	-	-	A	58017763	G	A	58017763	2	1	64	1	0	0	0	0	0	0	0	1	18239	962	34	4		4	ZNF773	19	58017763	Silent	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09	3307340	58017763	1111220	31	3295										
ZMYM3	0	genome.wustl.edu	37	chrX	70472962	70472963	+	Frame_Shift_Ins	INS	-	-	G													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ccgaggatggagaagggccaINSgggggggcccatcctcgagt							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	70472962	70472963	-	G	INS	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_ins	c.144_143	p.G49fs	0.994:1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	30	0	0	30	4	11.76	-	-	-	G	70472963	-	G	70472962	7	5	64	1	0	1	1	0	0	0	0	0	17797	175	7	0	4082	0	ZMYM3	23	70472962	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09		70472962	84797598	32	3296										
IRS4	0	genome.wustl.edu	37	chrX	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C													0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	tcccacttcctgagcctttgINSccccccccagagttcttgcc							TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	106	0	0	53	9	14.52	-	-	-	C	107977803	-	C	107977802	7	5	64	1	0	1	1	0	0	0	0	0	7896	1306	46	0	2004	0	IRS4	23	107977802	Frame_Shift_Ins	INS	-	TCGA-A2-A0T2-01A-11W-A097-09	37504840	107977802	47292758	33	3297										
KIAA1210	0	genome.wustl.edu	37	chrX	118230488	118230488	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.841065505936394	1.14691558441558	0	1.52922077922078	0.1	0.5224358974359	0	ggttcttcttttgtttgcggGgatttaaagtcattttgtgg	12	4	3	0			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	118230488	118230488	G	C	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1235	p.P412R	0.319	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	102	0	0	164	354	68.08	-	-	-	C	118230488	G	C	118230488	3	2	64	1	0	0	0	0	1	0	0	0	8266	1232	43	4	3922	4	KIAA1210	23	118230488	Missense_Mutation	SNP	G	TCGA-A2-A0T2-01A-11W-A097-09	10252686	118230488	37040072	34	3298										
ZFYVE9	0	genome.wustl.edu	37	chr1	52811772	52811772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	caatggccagccccttccctCgcagtacatgaatgatctgg	9	14	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	52811772	52811772	C	T	SNP	ZFYVE9	ENST00000287727	human	ensembl	69_37n	1	known	missense	c.4157	p.S1386L	0.998	pfam_DUF3480,pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	73	0	0	46	104	69.33	-	-	-	T	52811772	C	T	52811772	3	4	65	1	0	0	0	0	1	0	0	0	17767	893	31	1	4234	1	ZFYVE9	1	52811772	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		52811772	196438849	1	3299										
ELTD1	0	genome.wustl.edu	37	chr1	79358816	79358816	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcaactaacttctggtttcAaccctgcagtgtgacgaaaa	8	10	2	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	79358816	79358816	A	G	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.1808	p.L603S	0.989	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	81	0	0	113	28	19.86	-	-	-	G	79358816	A	G	79358816	3	3	65	1	0	0	0	0	1	0	0	0	5121	131	5	5	276	5	ELTD1	1	79358816	Missense_Mutation	SNP	A	TCGA-A2-A0T3-01A-21D-A10Y-09	26547044	79358816	169891805	2	3300										
CELSR2	0	genome.wustl.edu	37	chr1	109808508	109808509	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	tgtgaccgctgtgacaacccINSttttgctgaggtcaccacca							TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	109808508	109808509	-	T	INS	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	frame_shift_ins	c.5879_5880	p.A1962fs	1.000:0.968	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_GPCR_2_extracellular_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	26	0	0	15	29	65.91	-	-	-	T	109808509	-	T	109808508	7	5	65	1	0	1	1	0	0	0	0	0	3251	681	24	0	5933	0	CELSR2	1	109808508	Frame_Shift_Ins	INS	-	TCGA-A2-A0T3-01A-21D-A10Y-09	30449692	109808508	139442113	3	3301										
CFHR4	0	genome.wustl.edu	37	chr1	196884227	196884227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagggttctaattatgtaaCatgtagtaatggagagtggt	12	3	2	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	196884227	196884227	C	A	SNP	CFHR4	ENST00000367416	human	ensembl	69_37n	1	known	missense	c.1496	p.T499K	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	159	0	0	293	82	21.87	-	-	-	A	196884227	C	A	196884227	3	1	65	1	0	0	0	0	1	0	0	0	3316	478	17	4	776	4	CFHR4	1	196884227	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	87075719	196884227	52366394	4	3302										
CLIP4	0	genome.wustl.edu	37	chr2	29366667	29366667	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcagccactgctaaggaaatCaagcagatgcttctagatgc	10	10	2	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	29366667	29366667	C	A	SNP	CLIP4	ENST00000402240	human	ensembl	69_37n	1	known	silent	c.741	p.I247	1.000	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295	68	0	0	79	46	36.8	-	-	-	A	29366667	C	A	29366667	2	1	65	1	0	0	0	0	0	0	0	1	3565	816	29	2		2	CLIP4	2	29366667	Silent	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		29366667	213832706	5	3303										
PGAP1	0	genome.wustl.edu	37	chr2	197709278	197709278	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctattcttaaaagttgttaaGctggcttgcagatgaacaac	8	7	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	197709278	197709278	G	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	silent	c.2307	p.S769	0.996	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	14	0	0	41	21	33.87	-	-	-	A	197709278	G	A	197709278	2	1	65	1	0	0	0	0	0	0	0	1	11851	962	34	4		4	PGAP1	2	197709278	Silent	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	168342611	197709278	45490095	6	3304										
COL6A3	0	genome.wustl.edu	37	chr2	238290029	238290029	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gataagatcctgtccgatttCcagcctctggatgactttag	9	10	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	238290029	238290029	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	nonsense	c.1426	p.E476*	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	28	0	0	34	13	27.66	-	-	-	A	238290029	C	A	238290029	4	1	65	1	0	0	0	0	0	1	0	0	3731	864	30	2	8314	2	COL6A3	2	238290029	Nonsense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	40580751	238290029	4909344	7	3305										
LHFPL4	0	genome.wustl.edu	37	chr3	9547779	9547779	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggatgtatgcccagcgcactGaacagtcccccagggagtac	12	13	0	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	3	9547779	9547779	G	T	SNP	LHFPL4	ENST00000287585	human	ensembl	69_37n	-1	known	nonsense	c.515	p.S172*	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959	41	0	0	61	18	22.5	-	-	-	T	9547779	G	T	9547779	4	4	65	1	0	0	0	0	0	1	0	0	8822	1294	45	2	236	2	LHFPL4	3	9547779	Nonsense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		9547779	188474651	8	3306										
YEATS2	0	genome.wustl.edu	37	chr3	183442226	183442226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggatacttctagaattactgGctcccataaaacagaacagc	7	10	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	3	183442226	183442226	G	C	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.557	p.G186A	0.807	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	108	0	0	177	65	26.86	-	-	-	C	183442226	G	C	183442226	3	2	65	1	0	0	0	0	1	0	0	0	17569	1203	42	4	575	4	YEATS2	3	183442226	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	173894447	183442226	14580204	9	3307										
POU4F3	0	genome.wustl.edu	37	chr5	145718682	145718682	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaggagcgcgaagatgatgGccatgaactccaagcagcct	12	12	0	3			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	5	145718682	145718682	G	C	SNP	POU4F3	ENST00000230732	human	ensembl	69_37n	1	known	missense	c.7	p.A3P	0.999	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU4F3	HGNC	ENSG00000091010	26	0	0	48	29	37.66	-	-	-	C	145718682	G	C	145718682	3	2	65	1	0	0	0	0	1	0	0	0	12353	1203	42	4	9	4	POU4F3	5	145718682	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		145718682	35196578	10	3308										
BPHL	0	genome.wustl.edu	37	chr6	3119540	3119540	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatcagcctgagcctgagtaCcgctaaggctttaatcacgg	10	11	2	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	6	3119540	3119540	C	A	SNP	BPHL	ENST00000424847	human	ensembl	69_37n	1	known	nonsense	c.129	p.Y43*	0.001	NULL	NULL	-	no_errors	BPHL	HGNC	ENSG00000137274	37	0	0	55	7	11.29	-	-	-	A	3119540	C	A	3119540	4	1	65	1	0	0	0	0	0	1	0	0	1497	522	18	4		4	BPHL	6	3119540	Nonsense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		3119540	167995527	11	3309										
SIM1	0	genome.wustl.edu	37	chr6	100841453	100841453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttgtcaggggcaaggctgCgcgagagccccaccagggct	15	13	1	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	6	100841453	100841453	C	T	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.1480	p.A494T	0.950	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	23	0	0	59	11	15.71	-	-	-	T	100841453	C	T	100841453	3	4	65	1	0	0	0	0	1	0	0	0	14412	768	27	1	828	1	SIM1	6	100841453	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	97721913	100841453	70273614	12	3310										
SOD2	0	genome.wustl.edu	37	chr6	160183182	160183182	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggaccatcataggtgagtgGccggcgggagccgcgcagag	18	11	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	6	160183182	160183182	G	C	SNP	SOD2	ENST00000535372	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SOD2	HGNC	ENSG00000112096	13	0	0	34	10	22.73	-	-	-	C	160183182	G	C	160183182	1	2	65	0	1	0	0	0	0	0	0	0	15010	1218	42	4		4	SOD2	6	160183182	RNA	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	59341729	160183182	10931885	13	3311										
DGKI	0	genome.wustl.edu	37	chr7	137092668	137092668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccccgttgccggttttagctGcgtagtgaaggagtgaacag	14	9	0	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	7	137092668	137092668	G	A	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.2906	p.A969V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	140	0	0	403	106	20.83	-	-	-	A	137092668	G	A	137092668	3	1	65	1	0	0	0	0	1	0	0	0	4507	1319	46	4	316	4	DGKI	7	137092668	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		137092668	22045995	14	3312										
MLANA	0	genome.wustl.edu	37	chr9	5892543	5892543	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacggccactcttacaccacGgctgaagagtaagttcaaaa	8	12	2	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	5892543	5892543	G	A	SNP	MLANA	ENST00000381471	human	ensembl	69_37n	1	known	silent	c.69	p.T23	0.038	NULL	NULL	-	no_errors	MLANA	HGNC	ENSG00000120215	35	0	0	80	33	29.2	-	-	-	A	5892543	G	A	5892543	2	1	65	1	0	0	0	0	0	0	0	1	9682	1103	39	1		1	MLANA	9	5892543	Silent	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		5892543	135320888	15	3313										
KIAA1045	0	genome.wustl.edu	37	chr9	34976648	34976648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcggcccgccagtttgctGccctggaccctgaacatcga	12	15	0	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	34976648	34976648	G	T	SNP	KIAA1045	ENST00000242315	human	ensembl	69_37n	1	known	missense	c.760	p.A254S	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733	33	0	0	74	24	24.49	-	-	-	T	34976648	G	T	34976648	3	4	65	1	0	0	0	0	1	0	0	0	8259	1319	46	4	774	4	KIAA1045	9	34976648	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	29084105	34976648	106236783	16	3314										
GRIN3A	0	genome.wustl.edu	37	chr9	104432629	104432629	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atacagagtgaggaagacggCagtgatgtgcagagccacaa	14	7	0	5			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	104432629	104432629	C	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.2065	p.A689S	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	43	0	0	54	49	47.57	-	-	-	A	104432629	C	A	104432629	3	1	65	1	0	0	0	0	1	0	0	0	6834	710	25	4	1310	4	GRIN3A	9	104432629	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	69455981	104432629	36780802	17	3315										
FAM22A	0	genome.wustl.edu	37	chr10	88988363	88988363	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccctctgcggaggtgttgtGtgtccacctcccctactcct	10	16	1	0			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	10	88988363	88988363	G	T	SNP	FAM22A	ENST00000451286	human	ensembl	69_37n	1	known	missense	c.58	p.V20L	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM22A	HGNC	ENSG00000184923	13	0	0	14	7	33.33	-	-	-	T	88988363	G	T	88988363	3	4	65	1	0	0	0	0	1	0	0	0	5585	1364	48	4	732	4	FAM22A	10	88988363	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		88988363	46546384	18	3316										
PHRF1	0	genome.wustl.edu	37	chr11	607853	607853	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccctggcttctgtaacacGttccggcctgtggacgataa	11	12	1	0			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	607853	607853	G	C	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	silent	c.2397	p.T799	0.061	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	16	0	0	47	13	21.67	-	-	-	C	607853	G	C	607853	2	2	65	1	0	0	0	0	0	0	0	1	11935	1132	40	3		3	PHRF1	11	607853	Silent	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		607853	134398663	19	3317										
OR8H2	0	genome.wustl.edu	37	chr11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attaattccacttcaggaaaGcagaaagctttctctacttg	6	9	2	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	55873220	55873220	G	T	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.702	p.K234N	0.031	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	167	0	0	340	93	21.48	-	-	-	T	55873220	G	T	55873220	3	4	65	1	0	0	0	0	1	0	0	0	11311	962	34	4	704	4	OR8H2	11	55873220	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	55265367	55873220	79133296	20	3318										
NRXN2	0	genome.wustl.edu	37	chr11	64374729	64374729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgggcgtcttgggggcagccGgggccttctctttcaccacc	14	14	3	0			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	64374729	64374729	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.5078	p.P1693L	0.958	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	51	0	0	41	46	52.87	-	-	-	A	64374729	G	A	64374729	3	1	65	1	0	0	0	0	1	0	0	0	10739	1116	39	1	64	1	NRXN2	11	64374729	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09	8501509	64374729	70631787	21	3319										
PPM1E	0	genome.wustl.edu	37	chr17	57057757	57057757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgacctaggctatgatgggCgtgtggattcattcactgat	12	9	2	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	17	57057757	57057757	C	T	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	missense	c.1633	p.R545C	1.000	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	51	0	0	203	31	13.14	-	-	-	T	57057757	C	T	57057757	3	4	65	1	0	0	0	0	1	0	0	0	12415	768	27	1	1659	1	PPM1E	17	57057757	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		57057757	24137453	22	3320										
NETO1	0	genome.wustl.edu	37	chr18	70417577	70417577	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatttggaagatgacctccGcagtttatggtaattttcaa	9	7	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	18	70417577	70417577	G	T	SNP	NETO1	ENST00000327305	human	ensembl	69_37n	-1	known	silent	c.1261	p.R421	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	112	0	0	192	95	33.1	-	-	-	T	70417577	G	T	70417577	2	4	65	1	0	0	0	0	0	0	0	1	10411	1086	38	3		3	NETO1	18	70417577	Silent	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		70417577	7659671	23	3321										
MUC16	0	genome.wustl.edu	37	chr19	9091513	9091513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggactcagcgatgggctgGttctttgctcggagtgtgtc	17	8	2	0			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	19	9091513	9091513	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.302	p.T101N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	75	0	0	522	143	21.47	-	-	-	T	9091513	G	T	9091513	3	4	65	1	0	0	0	0	1	0	0	0	10045	1261	44	4	43557	4	MUC16	19	9091513	Missense_Mutation	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		9091513	50037470	24	3322										
SIRPB1	0	genome.wustl.edu	37	chr20	1559200	1559200	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtagattaattcccggcctgCtccagctcctctaaaccaca	6	15	1	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	20	1559200	1559200	C	A	SNP	SIRPB1	ENST00000381605	human	ensembl	69_37n	-1	known	missense	c.217	p.A73S	0.003	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	224	0	0	197	151	43.27	-	-	-	A	1559200	C	A	1559200	3	1	65	1	0	0	0	0	1	0	0	0	14422	797	28	4	995	4	SIRPB1	20	1559200	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		1559200	61466320	25	3323										
GCFC1	0	genome.wustl.edu	37	chr21	34127560	34127560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgaatggcttgaaaactcCgaagattcatctttaatatc	6	8	2	3			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	21	34127560	34127560	C	T	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	silent	c.1488	p.S496	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	56	0	0	118	50	29.59	-	-	-	T	34127560	C	T	34127560	2	4	65	1	0	0	0	0	0	0	0	1	6339	639	23	1		1	GCFC1	21	34127560	Silent	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09		34127560	14002335	26	3324										
HIRA	0	genome.wustl.edu	37	chr22	19348811	19348811	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attggcagcttcagtgcaagTgctggtgcagacagacacat	12	9	1	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	22	19348811	19348811	T	C	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	silent	c.2034	p.A678	1.000	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	108	0	0	288	74	20.44	-	-	-	C	19348811	T	C	19348811	2	2	65	1	0	0	0	0	0	0	0	1	7171	1683	59	5		5	HIRA	22	19348811	Silent	SNP	T	TCGA-A2-A0T3-01A-21D-A10Y-09		19348811	31955755	27	3325										
KLHL22	0	genome.wustl.edu	37	chr22	20843516	20843516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	catcctgacagccacaagatCccttacaactgtggcctgac	7	15	0	3			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	22	20843516	20843516	C	T	SNP	KLHL22	ENST00000444967	human	ensembl	69_37n	-1	putative	missense	c.79	p.D27N	0.004	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_stop_codon:bad_bp_length_for_coding_region	KLHL22	HGNC	ENSG00000099910	36	0	0	111	24	17.78	-	-	-	T	20843516	C	T	20843516	3	4	65	1	0	0	0	0	1	0	0	0	8430	870	30	2		2	KLHL22	22	20843516	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	1494705	20843516	30461050	28	3326										
FAM9B	0	genome.wustl.edu	37	chrX	8998340	8998340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcaaagcatgtttacttttGttctttgttttgctgcaagt	7	7	2	0			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	8998340	8998340	G	A	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	silent	c.243	p.N81	0.047	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	402	0	0	433	183	29.66	-	-	-	A	8998340	G	A	8998340	2	1	65	1	0	0	0	0	0	0	0	1	5706	1368	48	4		4	FAM9B	23	8998340	Silent	SNP	G	TCGA-A2-A0T3-01A-21D-A10Y-09		8998340	146272220	29	3327										
FAM9B	0	genome.wustl.edu	37	chrX	9000382	9000382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagtgacttaaacactttacCccgtgtgttcatctgtttca	6	10	3	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	9000382	9000382	C	A	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	missense	c.149	p.G50V	0.023	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	224	0	0	278	123	30.67	-	-	-	A	9000382	C	A	9000382	3	1	65	1	0	0	0	0	1	0	0	0	5706	637	22	4	435	4	FAM9B	23	9000382	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	2042	9000382	146270178	30	3328										
USP9X	0	genome.wustl.edu	37	chrX	41075185	41075185	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgcttgctgattaaaaaaTtacctcctgttcttgctata	6	9	1	1			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	41075185	41075185	T	C	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	silent	c.5365	p.L1789	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	63	0	0	87	49	36.03	-	-	-	C	41075185	T	C	41075185	2	2	65	1	0	0	0	0	0	0	0	1	17187	1490	52	5		5	USP9X	23	41075185	Silent	SNP	T	TCGA-A2-A0T3-01A-21D-A10Y-09	32074803	41075185	114195375	31	3329										
ARMCX2	0	genome.wustl.edu	37	chrX	100911424	100911424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccttcctgagatcgcggacaCccagaatctcatcaatttca	6	14	3	2			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	100911424	100911424	C	T	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	missense	c.1151	p.G384D	0.998	pfam_ARM-rpt_dom	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	80	0	0	103	66	39.05	-	-	-	T	100911424	C	T	100911424	3	4	65	1	0	0	0	0	1	0	0	0	964	507	18	4	751	4	ARMCX2	23	100911424	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	59836239	100911424	54359136	32	3330										
ODZ1	0	genome.wustl.edu	37	chrX	123615786	123615786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcagacacagggtccatagCcagatagtatttgtgagcag	11	8	1	3			TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	123615786	123615786	C	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.3745	p.A1249S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	81	0	0	107	55	33.95	-	-	-	A	123615786	C	A	123615786	3	1	65	1	0	0	0	0	1	0	0	0	10907	739	26	4	4497	4	ODZ1	23	123615786	Missense_Mutation	SNP	C	TCGA-A2-A0T3-01A-21D-A10Y-09	22704362	123615786	31654774	33	3331										
FUBP1	0	genome.wustl.edu	37	chr1	78414918	78414918	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gcttgttgtctataatactcAgcccaggctgcactataatc	7	11	2	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	1	78414918	78414918	A	G	SNP	FUBP1	ENST00000436586	human	ensembl	69_37n	-1	known	silent	c.1911	p.A637	0.990	pfam_DUF1897	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	127	0	0	56	35	38.04	-	-	-	G	78414918	A	G	78414918	2	3	66	1	0	0	0	0	0	0	0	1	6141	175	7	5		5	FUBP1	1	78414918	Silent	SNP	A	TCGA-A2-A0T4-01A-31D-A099-09		78414918	170835703	1	3332										
TDRKH	0	genome.wustl.edu	37	chr1	151748589	151748589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gacctgagagccctgaggtcCttcagtgggcaatctccatt	11	12	2	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	1	151748589	151748589	C	T	SNP	TDRKH	ENST00000368822	human	ensembl	69_37n	-1	known	silent	c.1200	p.K400	0.787	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134	136	0	0	107	19	15.08	-	-	-	T	151748589	C	T	151748589	2	4	66	1	0	0	0	0	0	0	0	1	15832	680	24	4		4	TDRKH	1	151748589	Silent	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09	73333671	151748589	97502032	2	3333										
NLRC4	0	genome.wustl.edu	37	chr2	32460481	32460481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	tgtacctacctaaaattctaAtctctgtatctgtgagtctc	5	10	4	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	2	32460481	32460481	A	G	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.2771	p.I924T	0.118	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	144	0	0	105	25	19.08	-	-	-	G	32460481	A	G	32460481	3	3	66	1	0	0	0	0	1	0	0	0	10541	101	4	5	311	5	NLRC4	2	32460481	Missense_Mutation	SNP	A	TCGA-A2-A0T4-01A-31D-A099-09		32460481	210738892	3	3334										
IL1R2	0	genome.wustl.edu	37	chr2	102626044	102626044	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gggctgccagaagctgccggTttcgtgggaggcattacaag	16	9	0	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	2	102626044	102626044	T	A	SNP	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	missense	c.88	p.F30I	0.000	pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	72	0	0	46	15	24.19	-	-	-	A	102626044	T	A	102626044	3	1	66	1	0	0	0	0	1	0	0	0	7713	1725	60	5	94	5	IL1R2	2	102626044	Missense_Mutation	SNP	T	TCGA-A2-A0T4-01A-31D-A099-09	70165563	102626044	140573329	4	3335										
LRP2	0	genome.wustl.edu	37	chr2	170060647	170060647	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	acccgtcatatttgttagctCggtaaattctttgtgtgtac	8	8	2	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	2	170060647	170060647	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7850	p.R2617L	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	219	0	0	130	34	20.61	-	-	-	A	170060647	C	A	170060647	3	1	66	1	0	0	0	0	1	0	0	0	9022	884	31	3	6269	3	LRP2	2	170060647	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09	67434603	170060647	73138726	5	3336										
SPEG	0	genome.wustl.edu	37	chr2	220337000	220337000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gcaggtggtggctgtgacggGgaggatggtcacactcacat	17	8	2	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	2	220337000	220337000	G	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.3887	p.G1296V	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	25	0	0	21	5	19.23	-	-	-	T	220337000	G	T	220337000	3	4	66	1	0	0	0	0	1	0	0	0	15127	1232	43	4	3957	4	SPEG	2	220337000	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	50276353	220337000	22862373	6	3337										
CCR2	0	genome.wustl.edu	37	chr3	46399979	46399979	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ggtatctctcggtgttcttcCgaaagcacatcaccaagcgc	9	13	3	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	3	46399979	46399979	C	T	SNP	CCR2	ENST00000445132	human	ensembl	69_37n	1	known	nonsense	c.961	p.R321*	1.000	prints_Chemokine_rcpt,prints_Chemokine_CCR2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	134	0	0	76	32	29.36	-	-	-	T	46399979	C	T	46399979	4	4	66	1	0	0	0	0	0	1	0	0	2970	644	23	1	963	1	CCR2	3	46399979	Nonsense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		46399979	151622451	7	3338										
ZIC4	0	genome.wustl.edu	37	chr3	147114016	147114016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ggggcgcagcgaggttcaccGtcaggttcatgcccccgtag	15	13	3	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	3	147114016	147114016	G	A	SNP	ZIC4	ENST00000525172	human	ensembl	69_37n	-1	known	missense	c.461	p.T154M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963	25	0	0	16	10	38.46	-	-	-	A	147114016	G	A	147114016	3	1	66	1	0	0	0	0	1	0	0	0	17777	1145	40	1	705	1	ZIC4	3	147114016	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	100714037	147114016	50908414	8	3339										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	75	0	0	44	9	16.98	-	-	-	G	178952085	A	G	178952085	3	3	66	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0T4-01A-31D-A099-09	31838069	178952085	19070345	9	3340										
FAM193A	0	genome.wustl.edu	37	chr4	2717831	2717831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ggaagtggaatatttcaaaaGgtaaatgtggaggctgtgtc	14	3	1	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	4	2717831	2717831	G	C	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	missense	c.3704	p.R1235T	1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	261	0	0	147	43	22.51	-	-	-	C	2717831	G	C	2717831	3	2	66	1	0	0	0	0	1	0	0	0	5566	1014	35	4	3643	4	FAM193A	4	2717831	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09		2717831	188436445	10	3341										
PCDHGA12	0	genome.wustl.edu	37	chr5	140812078	140812078	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gctccccgctccgcagagccCggctacctggtgaccaaggt	12	17	0	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	5	140812078	140812078	C	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	silent	c.1752	p.P584	0.108	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	48	0	0	32	22	40.74	-	-	-	A	140812078	C	A	140812078	2	1	66	1	0	0	0	0	0	0	0	1	11626	639	23	3		3	PCDHGA12	5	140812078	Silent	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		140812078	40103182	11	3342										
DOCK2	0	genome.wustl.edu	37	chr5	169135223	169135223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	cccatgaatgagtatcgctcCgttgtgtactatcaagtcaa	8	10	2	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	5	169135223	169135223	C	T	SNP	DOCK2	ENST00000520908	human	ensembl	69_37n	1	putative	missense	c.14	p.P5L	0.009	NULL	pfam_DOCK,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like	-	no_errors	DOCK2	HGNC	ENSG00000134516	117	0	0	100	16	13.68	-	-	-	T	169135223	C	T	169135223	3	4	66	1	0	0	0	0	1	0	0	0	4722	639	23	1	1492	1	DOCK2	5	169135223	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09	28323145	169135223	11780037	12	3343										
HMGCLL1	0	genome.wustl.edu	37	chr6	55441924	55441924	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	aaggagactgagaagccagaGacatcgggctgaaagcagtg	15	7	0	4			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	6	55441924	55441924	G	C	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	silent	c.150	p.V50	0.007	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	72	0	0	64	59	47.97	-	-	-	C	55441924	G	C	55441924	2	2	66	1	0	0	0	0	0	0	0	1	7281	929	33	2		2	HMGCLL1	6	55441924	Silent	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09		55441924	115673143	13	3344										
HMGCLL1	0	genome.wustl.edu	37	chr6	55443840	55443840	+	Missense_Mutation	SNP	G	G	A													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ggcagtgcttcaccgcggatGgcacattccccatggcggag							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	6	55443840	55443840	G	A	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.14	p.P5L	0.975	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	34	0	0	24	34	57.63	-	-	-	A	55443840	G	A	55443840	3	1	66	1	0	0	0	0	1	0	0	0	7281	1348	47	4	1138	4	HMGCLL1	6	55443840	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	1916	55443840	115671227	14	3345	27	2								
HMGCLL1	0	genome.wustl.edu	37	chr6	55443841	55443841	+	Missense_Mutation	SNP	G	G	C													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gcagtgcttcaccgcggatgGcacattccccatggcggagc							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	6	55443841	55443841	G	C	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.13	p.P5A	0.986	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	34	0	0	25	34	57.63	-	-	-	C	55443841	G	C	55443841	3	2	66	1	0	0	0	0	1	0	0	0	7281	1203	42	4	1139	4	HMGCLL1	6	55443841	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	1	55443841	115671226	15	3346	27	2								
THSD7A	0	genome.wustl.edu	37	chr7	11581237	11581237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	cagtgggctcattggtaatgCgccgcttcctcagtttgaag	12	10	2	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	7	11581237	11581237	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.1631	p.R544H	0.091	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	98	0	0	70	22	23.91	-	-	-	T	11581237	C	T	11581237	3	4	66	1	0	0	0	0	1	0	0	0	15974	768	27	1	3430	1	THSD7A	7	11581237	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		11581237	147557426	16	3347										
ZMIZ2	0	genome.wustl.edu	37	chr7	44802938	44802938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	tggagcagacagctatcaagGtgtccctgaagtgccccatc	11	12	1	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	7	44802938	44802938	G	A	SNP	ZMIZ2	ENST00000309315	human	ensembl	69_37n	1	known	missense	c.1786	p.V596M	1.000	pfam_Znf_MIZ,pfscan_Znf_MIZ	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515	65	0	0	54	18	24.66	-	-	-	A	44802938	G	A	44802938	3	1	66	1	0	0	0	0	1	0	0	0	17793	1261	44	4	1832	4	ZMIZ2	7	44802938	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	33221701	44802938	114335725	17	3348										
GPR37	0	genome.wustl.edu	37	chr7	124387024	124387024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ctgctttgcggattttcctcGcagtcactagagagcaggtg	12	10	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	7	124387024	124387024	G	A	SNP	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	missense	c.1397	p.A466V	1.000	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	116	0	0	90	33	26.61	-	-	-	A	124387024	G	A	124387024	3	1	66	1	0	0	0	0	1	0	0	0	6741	1087	38	1	448	1	GPR37	7	124387024	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	79584086	124387024	34751639	18	3349										
IL11RA	0	genome.wustl.edu	37	chr9	34655292	34655292	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gtgtctgcctcctccccctgCccccaggcctggggcccccc	10	23	1	0			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	9	34655292	34655292	C	T	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	silent	c.78	p.C26	0.975	NULL	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	24	0	0	18	8	30.77	-	-	-	T	34655292	C	T	34655292	2	4	66	1	0	0	0	0	0	0	0	1	7677	747	26	4		4	IL11RA	9	34655292	Silent	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		34655292	106558139	19	3350										
ZNF618	0	genome.wustl.edu	37	chr9	116794996	116794996	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	aagagacgaacagcagttcgCagaactccagcggtgagtgt	13	9	0	3			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	9	116794996	116794996	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	nonsense	c.1156	p.Q386*	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	82	0	0	56	11	16.42	-	-	-	T	116794996	C	T	116794996	4	4	66	1	0	0	0	0	0	1	0	0	18138	711	25	4	919	4	ZNF618	9	116794996	Nonsense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09	82139704	116794996	24418435	20	3351										
CNNM1	0	genome.wustl.edu	37	chr10	101150099	101150099	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ttgtaacatcaacctggataCagagaccagcccctgcagta	8	12	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	10	101150099	101150099	C	G	SNP	CNNM1	ENST00000356713	human	ensembl	69_37n	1	known	missense	c.2711	p.T904R	0.199	NULL	pfam_DUF21,pfam_Cysta_beta_synth_core	-	no_errors	CNNM1	HGNC	ENSG00000119946	114	0	0	81	31	27.68	-	-	-	G	101150099	C	G	101150099	3	3	66	1	0	0	0	0	1	0	0	0	3642	478	17	4	2749	4	CNNM1	10	101150099	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		101150099	34384648	21	3352										
SF3B2	0	genome.wustl.edu	37	chr11	65825830	65825830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	tcgctcgtccctgggccagtCagcgtcagagactgaggagg	15	12	2	2			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	11	65825830	65825830	C	T	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	missense	c.920	p.S307L	0.997	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	61	0	0	85	29	25.22	-	-	-	T	65825830	C	T	65825830	3	4	66	1	0	0	0	0	1	0	0	0	14239	838	29	2	954	2	SF3B2	11	65825830	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		65825830	69180686	22	3353										
CPT1A	0	genome.wustl.edu	37	chr11	68548116	68548116	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gtgaaaactcacctcccaaaGgtgggccacgatcggcgcat	11	13	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	11	68548116	68548116	G	C	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	missense	c.1450	p.L484V	0.996	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	82	0	0	161	83	33.74	-	-	-	C	68548116	G	C	68548116	3	2	66	1	0	0	0	0	1	0	0	0	3861	1000	35	4	943	4	CPT1A	11	68548116	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	2722286	68548116	66458400	23	3354										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256739	69256741	+	In_Frame_Del	DEL	GAT	GAT	-													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	cggcgctcttcagcgttgtgGatgaagtggcagcggggccc							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	14	69256739	69256741	GAT	-	DEL	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	in_frame_del	c.528_526	p.I176in_frame_del	1.000:1.000:1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	43	0	0	27	13	32.5	-	-	-	-	69256741	GAT	-	69256739	7	5	66	1	0	1	0	1	0	0	0	0	17742	1164	41	0	492	0	ZFP36L1	14	69256739	In_Frame_Del	DEL	GAT	TCGA-A2-A0T4-01A-31D-A099-09		69256739	38092801	24	3355										
PPCDC	0	genome.wustl.edu	37	chr15	75341501	75341501	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ttgctcccaggtctcggggcCatggctgaagtggggaccat	15	11	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	15	75341501	75341501	C	T	SNP	PPCDC	ENST00000342932	human	ensembl	69_37n	1	known	silent	c.540	p.A180	1.000	superfamily_Flavoprotein	pfam_Flavoprotein,superfamily_Flavoprotein	-	no_errors	PPCDC	HGNC	ENSG00000138621	101	0	0	64	23	26.44	-	-	-	T	75341501	C	T	75341501	2	4	66	1	0	0	0	0	0	0	0	1	12377	581	21	4		4	PPCDC	15	75341501	Silent	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		75341501	27189891	25	3356										
HCFC1R1	0	genome.wustl.edu	37	chr16	3073329	3073331	+	In_Frame_Del	DEL	CTC	CTC	-													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gagaagtgggtggccatgttCtcctcagacagaaactgctt							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	16	3073329	3073331	CTC	-	DEL	HCFC1R1	ENST00000248089	human	ensembl	69_37n	-1	known	in_frame_del	c.186_184	p.E62in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	HCFC1R1	HGNC	ENSG00000103145	95	0	0	97	11	10.19	-	-	-	-	3073331	CTC	-	3073329	7	5	66	1	0	1	0	1	0	0	0	0	7043	912	32	0	238	0	HCFC1R1	16	3073329	In_Frame_Del	DEL	CTC	TCGA-A2-A0T4-01A-31D-A099-09		3073329	87281424	26	3357										
CDH1	0	genome.wustl.edu	37	chr16	68862179	68862180	+	Frame_Shift_Ins	INS	-	-	T													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	gacaacgtttattactatgaINStgaagaaggaggcggagaag							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	16	68862179	68862180	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2267_2268	p.E757fs	1.000:0.999	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	113	0	0	58	24	29.27	-	-	-	T	68862180	-	T	68862179	7	5	66	1	0	1	1	0	0	0	0	0	3124	333	12	0	2321	0	CDH1	16	68862179	Frame_Shift_Ins	INS	-	TCGA-A2-A0T4-01A-31D-A099-09	65788850	68862179	21492574	27	3358										
MFSD11	0	genome.wustl.edu	37	chr17	74735072	74735072	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ttttcacggcagtggatataCcaggtattgtaccgtatgat	10	7	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	17	74735072	74735072	C	G	SNP	MFSD11	ENST00000336509	human	ensembl	69_37n	1	known	missense	c.149	p.T50S	1.000	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD11	HGNC	ENSG00000092931	152	0	0	82	32	27.83	-	-	-	G	74735072	C	G	74735072	3	3	66	1	0	0	0	0	1	0	0	0	9600	507	18	4	155	4	MFSD11	17	74735072	Missense_Mutation	SNP	C	TCGA-A2-A0T4-01A-31D-A099-09		74735072	6460138	28	3359										
CTPS2	0	genome.wustl.edu	37	chrX	16716365	16716365	+	Frame_Shift_Del	DEL	A	A	-													0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	agttctatgcttgcctcaatAacgcatatttggggctcttc							TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	X	16716365	16716365	A	-	DEL	CTPS2	ENST00000359276	human	ensembl	69_37n	-1	known	frame_shift_del	c.432	p.I145fs	0.098	pfam_CTP_synthase_N,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230	150	0	0	96	20	17.09	-	-	-	-	16716365	A	-	16716365	7	5	66	1	0	1	0	1	0	0	0	0	4055	349	13	0	1388	0	CTPS2	23	16716365	Frame_Shift_Del	DEL	A	TCGA-A2-A0T4-01A-31D-A099-09		16716365	138554195	29	3360										
KDM6A	0	genome.wustl.edu	37	chrX	44896936	44896936	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	ccacttatatgaaacccaggTaagtattttaacttattcta	4	8	1	1			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	X	44896936	44896936	T	G	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	splice_site	c.654+2	e8+2	1.000	-	-	-	no_errors	KDM6A	HGNC	ENSG00000147050	177	0	0	104	37	26.06	-	-	-	G	44896936	T	G	44896936	5	3	66	1	0	0	0	0	0	0	1	0	8190	1652	57	5	686	5	KDM6A	23	44896936	Splice_Site	SNP	T	TCGA-A2-A0T4-01A-31D-A099-09	28180571	44896936	110373624	30	3361										
CXorf26	0	genome.wustl.edu	37	chrX	75392998	75392998	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.683080497494884	1.44337137840211	1.63582089552239	1.36318407960199	1	1	0	cggccaccagtggaactgatGagccggtgagacgctgttct	14	11	1	3			TCGA-A2-A0T4-01A-31D-A099-09	TCGA-A2-A0T4-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f1b1fda-4956-498a-b8ff-e98b5d64e509	ab57a14c-8ada-4971-8cbd-22a455256bd4	X	75392998	75392998	G	A	SNP	CXorf26	ENST00000373358	human	ensembl	69_37n	1	known	missense	c.25	p.E9K	0.003	NULL	pfam_Put_polysacc_synth	-	no_errors	CXorf26	HGNC	ENSG00000102390	160	0	0	127	23	15.23	-	-	-	A	75392998	G	A	75392998	3	1	66	1	0	0	0	0	1	0	0	0	4135	1291	45	2	27	2	CXorf26	23	75392998	Missense_Mutation	SNP	G	TCGA-A2-A0T4-01A-31D-A099-09	30496062	75392998	79877562	31	3362										
AGRN	0	genome.wustl.edu	37	chr1	957654	957654	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctggacggcggcaacaaggTggtgatcagcggctttggag	18	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	957654	957654	T	G	SNP	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	missense	c.275	p.V92G	1.000	pfam_Agrin_NtA,superfamily_TIMP-like_OB-fold,pfscan_Agrin_NtA	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	132	0	0	68	18	20.93	-	-	-	G	957654	T	G	957654	3	3	67	1	0	0	0	0	1	0	0	0	397	1696	59	5	281	5	AGRN	1	957654	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		957654	248292967	1	3363										
CCNL2	0	genome.wustl.edu	37	chr1	1322639	1322639	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgcctgctgtgcccagggTggtcccgctcatagcgacgg	15	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	1322639	1322639	T	G	SNP	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	missense	c.1535	p.H512P	1.000	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	95	1	1	68	13	15.85	-	-	-	G	1322639	T	G	1322639	3	3	67	1	0	0	0	0	1	0	0	0	2961	1696	59	5	31	5	CCNL2	1	1322639	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	364985	1322639	247927982	2	3364										
SSU72	0	genome.wustl.edu	37	chr1	1477475	1477475	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagacggtgtgcagaaaggTgcggccactcttctcctcga	13	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	1477475	1477475	T	G	SNP	SSU72	ENST00000291386	human	ensembl	69_37n	-1	known	missense	c.556	p.T186P	0.498	pfam_RNA_pol_II_suA	pfam_RNA_pol_II_suA,superfamily_Ptyr_pPase_SF	-	no_errors	SSU72	HGNC	ENSG00000160075	122	1	0.81	58	16	21.62	-	-	-	G	1477475	T	G	1477475	3	3	67	1	0	0	0	0	1	0	0	0	15293	1696	59	5	32	5	SSU72	1	1477475	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	154836	1477475	247773146	3	3365										
NPHP4	0	genome.wustl.edu	37	chr1	5923987	5923987	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaaccgcagcagctccgggTggtcgctgtgcaggtggaat	16	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	5923987	5923987	T	G	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.4103	p.H1368P	0.270	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	124	1	0.79	102	23	18.11	-	-	-	G	5923987	T	G	5923987	3	3	67	1	0	0	0	0	1	0	0	0	10653	1696	59	5	185	5	NPHP4	1	5923987	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4446512	5923987	243326634	4	3366										
KCNAB2	0	genome.wustl.edu	37	chr1	6155660	6155660	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagtacgacagtggcatcccAccctactcaagagcctcctt	7	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	6155660	6155660	A	C	SNP	KCNAB2	ENST00000378083	human	ensembl	69_37n	1	known	silent	c.924	p.P308	0.797	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB2	HGNC	ENSG00000069424	55	0	0	81	17	17.35	-	-	-	C	6155660	A	C	6155660	2	2	67	1	0	0	0	0	0	0	0	1	8064	146	6	5		5	KCNAB2	1	6155660	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	231673	6155660	243094961	5	3367										
CHD5	0	genome.wustl.edu	37	chr1	6204082	6204082	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagccggatccctgcgacccAcctgtggccccagtaggcct	11	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	6204082	6204082	A	C	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	splice_site	c.1934+2	e12+2	0.999	-	-	-	no_errors	CHD5	HGNC	ENSG00000116254	115	1	0.85	106	15	12.1	-	-	-	C	6204082	A	C	6204082	5	2	67	1	0	0	0	0	0	0	1	0	3357	173	6	5	4048	5	CHD5	1	6204082	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	48422	6204082	243046539	6	3368										
DNAJC11	0	genome.wustl.edu	37	chr1	6697505	6697505	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagagaggacacatgttctcAcccattctggactcttctgc	8	12	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	6697505	6697505	A	C	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	splice_site	c.1381+2	e13+2	0.996	-	-	-	no_errors	DNAJC11	HGNC	ENSG00000007923	146	1	0.67	128	19	12.67	-	-	-	C	6697505	A	C	6697505	5	2	67	1	0	0	0	0	0	0	1	0	4665	173	6	5	312	5	DNAJC11	1	6697505	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	493423	6697505	242553116	7	3369										
RERE	0	genome.wustl.edu	37	chr1	8421518	8421518	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtctgaactctctccctcAccttcagatggcgagttggg	10	13	4	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	8421518	8421518	A	C	SNP	RERE	ENST00000505225	human	ensembl	69_37n	-1	putative	splice_site	c.307+2	e3+2	0.004	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	RERE	HGNC	ENSG00000142599	95	1	1	133	26	16.35	-	-	-	C	8421518	A	C	8421518	5	2	67	1	0	0	0	0	0	0	1	0	13314	146	6	5	2675	5	RERE	1	8421518	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1724013	8421518	240829103	8	3370										
RERE	0	genome.wustl.edu	37	chr1	8421932	8421932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaagaggcttcctccttcAccttctgcaggggaaaagcc	12	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	8421932	8421932	A	C	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.1907	p.V636G	0.997	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	110	1	0.85	82	20	19.61	-	-	-	C	8421932	A	C	8421932	3	2	67	1	0	0	0	0	1	0	0	0	13314	159	6	5	2821	5	RERE	1	8421932	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	414	8421932	240828689	9	3371										
SLC2A5	0	genome.wustl.edu	37	chr1	9097666	9097666	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactgttccgaagtgacaggTggaagctctttcagttcctc	10	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	9097666	9097666	T	G	SNP	SLC2A5	ENST00000377424	human	ensembl	69_37n	-1	known	silent	c.1485	p.P495	0.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Fru_transpt_5,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A5	HGNC	ENSG00000142583	101	1	0.97	79	21	21	-	-	-	G	9097666	T	G	9097666	2	3	67	1	0	0	0	0	0	0	0	1	14637	1683	59	5		5	SLC2A5	1	9097666	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	675734	9097666	240152955	10	3372										
PIK3CD	0	genome.wustl.edu	37	chr1	9770527	9770527	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgcaggatgccccctggggTggactgccccatggaattct	13	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	9770527	9770527	T	G	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	missense	c.14	p.V5G	0.949	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	127	1	0.77	98	17	14.53	-	-	-	G	9770527	T	G	9770527	3	3	67	1	0	0	0	0	1	0	0	0	11989	1696	59	5	16	5	PIK3CD	1	9770527	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	672861	9770527	239480094	11	3373										
PEX14	0	genome.wustl.edu	37	chr1	10689815	10689815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaggaggaaggcgagggggTggtggacgtcaagggccagg	22	7	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	10689815	10689815	T	G	SNP	PEX14	ENST00000356607	human	ensembl	69_37n	1	known	missense	c.905	p.V302G	0.106	NULL	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655	312	3	0.93	320	51	13.71	-	-	-	G	10689815	T	G	10689815	3	3	67	1	0	0	0	0	1	0	0	0	11816	1696	59	5	939	5	PEX14	1	10689815	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	919288	10689815	238560806	12	3374										
PEX14	0	genome.wustl.edu	37	chr1	10689848	10689848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggccaggtgcggatggaggTgcaaggcgaggaggagaaga	22	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	10689848	10689848	T	G	SNP	PEX14	ENST00000356607	human	ensembl	69_37n	1	known	missense	c.938	p.V313G	1.000	NULL	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655	444	2	0.45	435	53	10.82	-	-	-	G	10689848	T	G	10689848	3	3	67	1	0	0	0	0	1	0	0	0	11816	1696	59	5	972	5	PEX14	1	10689848	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	33	10689848	238560773	13	3375										
MTOR	0	genome.wustl.edu	37	chr1	11317200	11317200	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaattcgggtggcattcccAccttccactcctatgaggct	8	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	11317200	11317200	A	C	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.294	p.G98	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	125	1	0.79	68	16	19.05	-	-	-	C	11317200	A	C	11317200	2	2	67	1	0	0	0	0	0	0	0	1	10026	146	6	5		5	MTOR	1	11317200	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	627352	11317200	237933421	14	3376										
CLCN6	0	genome.wustl.edu	37	chr1	11897515	11897515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccttcggtcgcagcttgtcAccctgcttgtccgaggagtt	11	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	11897515	11897515	A	C	SNP	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	missense	c.2254	p.T752P	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	102	1	0.95	55	14	20.29	-	-	-	C	11897515	A	C	11897515	3	2	67	1	0	0	0	0	1	0	0	0	3497	159	6	5	2342	5	CLCN6	1	11897515	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	580315	11897515	237353106	15	3377										
MFN2	0	genome.wustl.edu	37	chr1	12066642	12066642	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccaaccccagcatgcccccActgccacagggctcgctcac	8	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	12066642	12066642	A	C	SNP	MFN2	ENST00000235329	human	ensembl	69_37n	1	known	silent	c.1764	p.P588	0.000	pfam_Fzo/mitofusin_HR2	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN2	HGNC	ENSG00000116688	104	1	0.95	132	18	12	-	-	-	C	12066642	A	C	12066642	2	2	67	1	0	0	0	0	0	0	0	1	9595	146	6	5		5	MFN2	1	12066642	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	169127	12066642	237183979	16	3378										
TNFRSF8	0	genome.wustl.edu	37	chr1	12183361	12183361	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atatggctgagaaggacaccAcctttgaggcgccacccctg	11	13	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	12183361	12183361	A	C	SNP	TNFRSF8	ENST00000263932	human	ensembl	69_37n	1	known	missense	c.967	p.T323P	0.128	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_8	-	no_errors	TNFRSF8	HGNC	ENSG00000120949	68	0	0	35	10	22.22	-	-	-	C	12183361	A	C	12183361	3	2	67	1	0	0	0	0	1	0	0	0	16394	159	6	5	1001	5	TNFRSF8	1	12183361	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	116719	12183361	237067260	17	3379										
VPS13D	0	genome.wustl.edu	37	chr1	12338010	12338010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagccggatgttttgcccAccttccgggtctggcagtgc	14	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	12338010	12338010	A	C	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	missense	c.833	p.H278P	0.075	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	102	0	0	103	18	14.88	-	-	-	C	12338010	A	C	12338010	3	2	67	1	0	0	0	0	1	0	0	0	17289	146	6	5	4435	5	VPS13D	1	12338010	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	154649	12338010	236912611	18	3380										
PRAMEF2	0	genome.wustl.edu	37	chr1	12918965	12918965	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catggaggagctgcccagggTgctctatctcccactcttca	10	14	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	12918965	12918965	T	G	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.101	p.V34G	0.000	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	228	1	0.43	188	29	13.36	-	-	-	G	12918965	T	G	12918965	3	3	67	1	0	0	0	0	1	0	0	0	12513	1696	59	5	103	5	PRAMEF2	1	12918965	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	580955	12918965	236331656	19	3381										
PRDM2	0	genome.wustl.edu	37	chr1	14107347	14107347	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatgccaccgcacagtccccActtccaattctgtccccaac	4	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	14107347	14107347	A	C	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	silent	c.3057	p.P1019	0.947	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	126	0	0	178	27	13.17	-	-	-	C	14107347	A	C	14107347	2	2	67	1	0	0	0	0	0	0	0	1	12539	146	6	5		5	PRDM2	1	14107347	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1188382	14107347	235143274	20	3382										
CELA2B	0	genome.wustl.edu	37	chr1	15812455	15812455	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctggttgtggactatgccAcctgctccagctctggctgg	13	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	15812455	15812455	A	C	SNP	CELA2B	ENST00000375910	human	ensembl	69_37n	1	known	missense	c.553	p.T185P	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704	148	1	0.66	138	22	13.66	-	-	-	C	15812455	A	C	15812455	3	2	67	1	0	0	0	0	1	0	0	0	3241	159	6	5	575	5	CELA2B	1	15812455	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1705108	15812455	233438166	21	3383										
PLEKHM2	0	genome.wustl.edu	37	chr1	16055619	16055619	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccttgaccagcagacggTgaagctggtgtgcaccaacc	13	12	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	16055619	16055619	T	G	SNP	PLEKHM2	ENST00000375799	human	ensembl	69_37n	1	known	missense	c.2009	p.V670G	1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786	135	0	0	80	17	17.35	-	-	-	G	16055619	T	G	16055619	3	3	67	1	0	0	0	0	1	0	0	0	12155	1696	59	5	2059	5	PLEKHM2	1	16055619	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	243164	16055619	233195002	22	3384										
SPEN	0	genome.wustl.edu	37	chr1	16257058	16257058	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcattggataagacaatcacAccagacactaaagctttgct	7	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	16257058	16257058	A	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.4323	p.T1441	0.188	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	89	0	0	58	18	23.68	-	-	-	C	16257058	A	C	16257058	2	2	67	1	0	0	0	0	0	0	0	1	15129	146	6	5		5	SPEN	1	16257058	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	201439	16257058	232993563	23	3385										
SPEN	0	genome.wustl.edu	37	chr1	16257637	16257637	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gattcagaactgaaaactccAccttccgttgggcctccaag	8	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	16257637	16257637	A	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.4902	p.P1634	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	91	0	0	45	14	23.73	-	-	-	C	16257637	A	C	16257637	2	2	67	1	0	0	0	0	0	0	0	1	15129	146	6	5		5	SPEN	1	16257637	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	579	16257637	232992984	24	3386										
SPEN	0	genome.wustl.edu	37	chr1	16265894	16265894	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catctccaacatctctccccAcctcatgattgtcattgcct	3	17	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	16265894	16265894	A	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.10967	p.H3656P	1.000	superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	172	1	0.57	174	28	13.73	-	-	-	C	16265894	A	C	16265894	3	2	67	1	0	0	0	0	1	0	0	0	15129	159	6	5	11025	5	SPEN	1	16265894	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8257	16265894	232984727	25	3387										
ZBTB17	0	genome.wustl.edu	37	chr1	16271688	16271688	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccctttccgggcgggctccAcctccatttctgcggagaaa	10	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	16271688	16271688	A	C	SNP	ZBTB17	ENST00000375733	human	ensembl	69_37n	-1	known	missense	c.671	p.V224G	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	111	1	0.89	182	37	16.82	-	-	-	C	16271688	A	C	16271688	3	2	67	1	0	0	0	0	1	0	0	0	17623	159	6	5	1780	5	ZBTB17	1	16271688	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5794	16271688	232978933	26	3388										
MFAP2	0	genome.wustl.edu	37	chr1	17303349	17303349	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctcccagggggtctccccAccccagctgccggcccgtcc	10	23	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	17303349	17303349	A	C	SNP	MFAP2	ENST00000476788	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MFAP2	HGNC	ENSG00000117122	115	1	0.86	79	26	24.3	-	-	-	C	17303349	A	C	17303349	1	2	67	0	1	0	0	0	0	0	0	0	9585	174	6	5		5	MFAP2	1	17303349	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1031661	17303349	231947272	27	3389										
ARHGEF10L	0	genome.wustl.edu	37	chr1	18021723	18021723	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggtgggcactgaccagggTgtcatcgtcctgctgcccgt	15	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	18021723	18021723	T	G	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	silent	c.3255	p.G1085	0.053	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	55	0	0	41	8	16.33	-	-	-	G	18021723	T	G	18021723	2	3	67	1	0	0	0	0	0	0	0	1	897	1683	59	5		5	ARHGEF10L	1	18021723	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	718374	18021723	231228898	28	3390										
UBR4	0	genome.wustl.edu	37	chr1	19439211	19439211	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgcagccatagcacttggTggaggatgtgtggccacagc	16	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	19439211	19439211	T	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.11608	p.T3870P	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	185	0	0	141	23	14.02	-	-	-	G	19439211	T	G	19439211	3	3	67	1	0	0	0	0	1	0	0	0	17001	1696	59	5	4059	5	UBR4	1	19439211	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1417488	19439211	229811410	29	3391										
AKR7L	0	genome.wustl.edu	37	chr1	19596145	19596145	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggggaagagctccgtttccAcctgccgggtggtggcgctg	17	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	19596145	19596145	A	C	SNP	AKR7L	ENST00000429712	human	ensembl	69_37n	-1	known	missense	c.536	p.V179G	1.000	NULL	NULL	-	pseudogene	AKR7L	HGNC	ENSG00000211454	187	1	0.53	123	20	13.99	-	-	-	C	19596145	A	C	19596145	3	2	67	1	0	0	0	0	1	0	0	0	477	159	6	5	475	5	AKR7L	1	19596145	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	156934	19596145	229654476	30	3392										
AKR7A2	0	genome.wustl.edu	37	chr1	19633876	19633876	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggggaagagctccgtttccAcctgccgggtggtggcgttg	17	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	19633876	19633876	A	C	SNP	AKR7A2	ENST00000235835	human	ensembl	69_37n	-1	known	missense	c.620	p.V207G	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A2	HGNC	ENSG00000053371	174	1	0.56	85	24	22.02	-	-	-	C	19633876	A	C	19633876	3	2	67	1	0	0	0	0	1	0	0	0	475	159	6	5	475	5	AKR7A2	1	19633876	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	37731	19633876	229616745	31	3393										
PLA2G2D	0	genome.wustl.edu	37	chr1	20442969	20442969	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgccctggattggaatcacAcctgccaagcagcccagcaa	9	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	20442969	20442969	A	C	SNP	PLA2G2D	ENST00000375105	human	ensembl	69_37n	-1	known	silent	c.42	p.G14	0.960	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2D	HGNC	ENSG00000117215	103	0	0	80	15	15.79	-	-	-	C	20442969	A	C	20442969	2	2	67	1	0	0	0	0	0	0	0	1	12071	173	6	5		5	PLA2G2D	1	20442969	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	809093	20442969	228807652	32	3394										
ECE1	0	genome.wustl.edu	37	chr1	21563237	21563237	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaagtgcctggccagcctcAccttttccttggctgatttt	8	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	21563237	21563237	A	C	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	splice_site	c.1488+2	e12+2	1.000	-	-	-	no_errors	ECE1	HGNC	ENSG00000117298	143	0	0	208	25	10.68	-	-	-	C	21563237	A	C	21563237	5	2	67	1	0	0	0	0	0	0	1	0	4924	173	6	5	854	5	ECE1	1	21563237	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1120268	21563237	227687384	33	3395										
ECE1	0	genome.wustl.edu	37	chr1	21573724	21573724	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcctcttaccatctgtcggTggtgttgatgagagtggaga	14	7	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	21573724	21573724	T	G	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.1153	p.T385P	0.993	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	152	0	0	141	19	11.73	-	-	-	G	21573724	T	G	21573724	3	3	67	1	0	0	0	0	1	0	0	0	4924	1696	59	5	1203	5	ECE1	1	21573724	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10487	21573724	227676897	34	3396										
HSPG2	0	genome.wustl.edu	37	chr1	22154746	22154746	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccctgggcaggctttcccAcctttgaatccatctcgaca	8	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	22154746	22154746	A	C	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	splice_site	c.12409+2	e89+2	0.969	-	-	-	no_errors	HSPG2	HGNC	ENSG00000142798	66	0	0	48	9	15.79	-	-	-	C	22154746	A	C	22154746	5	2	67	1	0	0	0	0	0	0	1	0	7484	173	6	5	800	5	HSPG2	1	22154746	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	581022	22154746	227095875	35	3397										
HSPG2	0	genome.wustl.edu	37	chr1	22183529	22183529	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcacatgtagagtggctgTgccctggtccatggcaaaca	12	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	22183529	22183529	T	G	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.5554	p.T1852P	0.990	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	155	0	0	100	20	16.67	-	-	-	G	22183529	T	G	22183529	3	3	67	1	0	0	0	0	1	0	0	0	7484	1696	59	5	7837	5	HSPG2	1	22183529	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28783	22183529	227067092	36	3398										
HSPG2	0	genome.wustl.edu	37	chr1	22204910	22204910	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggtgggtgtcaggggatggTggcagccatactcactgacg	17	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	22204910	22204910	T	G	SNP	HSPG2	ENST00000480900	human	ensembl	69_37n	-1	known	silent	c.243	p.P81	0.001	NULL	pfam_EGF_laminin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HSPG2	HGNC	ENSG00000142798	43	0	0	31	6	16.22	-	-	-	G	22204910	T	G	22204910	2	3	67	1	0	0	0	0	0	0	0	1	7484	1711	59	5		5	HSPG2	1	22204910	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21381	22204910	227045711	37	3399										
CELA3B	0	genome.wustl.edu	37	chr1	22307551	22307551	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagctcccggacctaccaggTggtgttgggcgagtacgacc	15	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	22307551	22307551	T	G	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	missense	c.248	p.V83G	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	186	1	0.53	85	19	18.1	-	-	-	G	22307551	T	G	22307551	3	3	67	1	0	0	0	0	1	0	0	0	3243	1696	59	5	262	5	CELA3B	1	22307551	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	102641	22307551	226943070	38	3400										
HTR1D	0	genome.wustl.edu	37	chr1	23519712	23519712	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaagtcaaagagcgccgggTggatccagcaggagtcccgg	16	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	23519712	23519712	T	G	SNP	HTR1D	ENST00000314113	human	ensembl	69_37n	-1	known	missense	c.1001	p.H334P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	192	1	0.52	84	13	13.27	-	-	-	G	23519712	T	G	23519712	3	3	67	1	0	0	0	0	1	0	0	0	7492	1696	59	5	136	5	HTR1D	1	23519712	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1212161	23519712	225730909	39	3401										
HTR1D	0	genome.wustl.edu	37	chr1	23520109	23520109	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatgtagaaggccccacaggTggagtagatggtgtaggaga	16	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	23520109	23520109	T	G	SNP	HTR1D	ENST00000314113	human	ensembl	69_37n	-1	known	missense	c.604	p.T202P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	146	1	0.68	94	15	13.51	-	-	-	G	23520109	T	G	23520109	3	3	67	1	0	0	0	0	1	0	0	0	7492	1696	59	5	533	5	HTR1D	1	23520109	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	397	23520109	225730512	40	3402										
IL22RA1	0	genome.wustl.edu	37	chr1	24463753	24463753	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggttgcaggacttccgggTgatccgctgacagcccttct	12	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	24463753	24463753	T	G	SNP	IL22RA1	ENST00000270800	human	ensembl	69_37n	-1	known	missense	c.223	p.T75P	0.970	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677	138	0	0	64	16	20	-	-	-	G	24463753	T	G	24463753	3	3	67	1	0	0	0	0	1	0	0	0	7727	1696	59	5	1521	5	IL22RA1	1	24463753	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	943644	24463753	224786868	41	3403										
RCAN3	0	genome.wustl.edu	37	chr1	24859650	24859650	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagcagttcctcatctccccTccagcctctcccccggtggg	8	19	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	24859650	24859650	T	C	SNP	RCAN3	ENST00000482807	human	ensembl	69_37n	1	known	missense	c.47	p.L16P	0.001	pfam_Calcipressin	pfam_Calcipressin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RCAN3	HGNC	ENSG00000117602	176	1	0.56	115	21	15.44	-	-	-	C	24859650	T	C	24859650	3	2	67	1	0	0	0	0	1	0	0	0	13253	1538	54	5	457	5	RCAN3	1	24859650	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	395897	24859650	224390971	42	3404										
SRRM1	0	genome.wustl.edu	37	chr1	24981553	24981553	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaaactcggcattcccctacAccccagcagtcaaaccgtac	5	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	24981553	24981553	A	C	SNP	SRRM1	ENST00000537199	human	ensembl	69_37n	1	known	missense	c.893	p.H298P	1.000	NULL	superfamily_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	206	0	0	201	28	12.12	-	-	-	C	24981553	A	C	24981553	3	2	67	1	0	0	0	0	1	0	0	0	15259	146	6	5	1282	5	SRRM1	1	24981553	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	121903	24981553	224269068	43	3405										
UBXN11	0	genome.wustl.edu	37	chr1	26609377	26609377	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctctcgctcagcggccaaggTgggcgtctccaccacaatct	10	16	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	26609377	26609377	T	G	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.1129	p.T377P	0.984	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	112	0	0	105	16	13.11	-	-	-	G	26609377	T	G	26609377	3	3	67	1	0	0	0	0	1	0	0	0	17010	1696	59	5	445	5	UBXN11	1	26609377	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1627824	26609377	222641244	44	3406										
ZNF683	0	genome.wustl.edu	37	chr1	26691431	26691431	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccataggtgaacaggtggggTggaggcaggagaagtgggta	20	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	26691431	26691431	T	G	SNP	ZNF683	ENST00000403843	human	ensembl	69_37n	-1	known	silent	c.606	p.P202	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083	186	0	0	186	34	15.38	-	-	-	G	26691431	T	G	26691431	2	3	67	1	0	0	0	0	0	0	0	1	18186	1683	59	5		5	ZNF683	1	26691431	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	82054	26691431	222559190	45	3407										
RPS6KA1	0	genome.wustl.edu	37	chr1	26900615	26900615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactcaacagctccaagcccAccccccagctgaagcccatc	5	21	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	26900615	26900615	A	C	SNP	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	missense	c.2158	p.T720P	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	127	1	0.77	138	31	18.13	-	-	-	C	26900615	A	C	26900615	3	2	67	1	0	0	0	0	1	0	0	0	13736	159	6	5	2356	5	RPS6KA1	1	26900615	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	209184	26900615	222350006	46	3408										
ARID1A	0	genome.wustl.edu	37	chr1	27057898	27057898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtccccggctccataccccTcccagcagtcgacgacacag	8	19	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	27057898	27057898	T	C	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.1606	p.S536P	0.992	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	344	3	0.86	331	44	11.7	-	-	-	C	27057898	T	C	27057898	3	2	67	1	0	0	0	0	1	0	0	0	915	1551	54	5	1616	5	ARID1A	1	27057898	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	157283	27057898	222192723	47	3409										
FAM46B	0	genome.wustl.edu	37	chr1	27338992	27338992	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagagcgtccagtcgcttcAcctgtggccagctcagccca	11	15	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	27338992	27338992	A	C	SNP	FAM46B	ENST00000289166	human	ensembl	69_37n	-1	known	missense	c.170	p.V57G	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46B	HGNC	ENSG00000158246	39	0	0	14	5	26.32	-	-	-	C	27338992	A	C	27338992	3	2	67	1	0	0	0	0	1	0	0	0	5612	159	6	5	1115	5	FAM46B	1	27338992	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	281094	27338992	221911629	48	3410										
SLC9A1	0	genome.wustl.edu	37	chr1	27426994	27426994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtcctcgtcctcctcagccAcctttgcaggatcccggctc	8	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	27426994	27426994	A	C	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	missense	c.2252	p.V751G	0.001	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	138	1	0.72	123	22	14.97	-	-	-	C	27426994	A	C	27426994	3	2	67	1	0	0	0	0	1	0	0	0	14798	159	6	5	199	5	SLC9A1	1	27426994	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	88002	27426994	221823627	49	3411										
SYTL1	0	genome.wustl.edu	37	chr1	27677420	27677420	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggactggggctctgagcccAcctggctccccctgcagccc	13	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	27677420	27677420	A	C	SNP	SYTL1	ENST00000543823	human	ensembl	69_37n	1	known	missense	c.1141	p.T381P	0.982	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL1	HGNC	ENSG00000142765	29	0	0	9	6	40	-	-	-	C	27677420	A	C	27677420	3	2	67	1	0	0	0	0	1	0	0	0	15574	159	6	5	1143	5	SYTL1	1	27677420	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	250426	27677420	221573201	50	3412										
MAP3K6	0	genome.wustl.edu	37	chr1	27684685	27684685	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctcaccggagctggctggTgcccccataactgaggcagc	13	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	27684685	27684685	T	G	SNP	MAP3K6	ENST00000357582	human	ensembl	69_37n	-1	known	missense	c.2902	p.T968P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	122	1	0.8	112	52	31.52	-	-	-	G	27684685	T	G	27684685	3	3	67	1	0	0	0	0	1	0	0	0	9325	1696	59	5	1000	5	MAP3K6	1	27684685	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7265	27684685	221565936	51	3413										
LAPTM5	0	genome.wustl.edu	37	chr1	31212718	31212718	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatgtaggagcccagcagggTgagcaggcacaggagatagt	16	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	31212718	31212718	T	G	SNP	LAPTM5	ENST00000294507	human	ensembl	69_37n	-1	known	missense	c.325	p.T109P	1.000	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	-	no_errors	LAPTM5	HGNC	ENSG00000162511	141	0	0	81	16	16.16	-	-	-	G	31212718	T	G	31212718	3	3	67	1	0	0	0	0	1	0	0	0	8680	1696	59	5	483	5	LAPTM5	1	31212718	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3528033	31212718	218037903	52	3414										
COL16A1	0	genome.wustl.edu	37	chr1	32122649	32122649	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtacctctttgccagctgcAccatccgtaccaggttcgcc	8	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	32122649	32122649	A	C	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	silent	c.4041	p.G1347	0.455	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	271	2	0.73	140	43	23.5	-	-	-	C	32122649	A	C	32122649	2	2	67	1	0	0	0	0	0	0	0	1	3703	146	6	5		5	COL16A1	1	32122649	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	909931	32122649	217127972	53	3415										
COL16A1	0	genome.wustl.edu	37	chr1	32167794	32167794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggagcccaggatacccacaTcccggtccaaagaggtcagc	11	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	32167794	32167794	T	C	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.1	p.M1V	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	163	0	0	91	19	17.27	-	-	-	C	32167794	T	C	32167794	3	2	67	1	0	0	0	0	1	0	0	0	3703	1435	50	5	5093	5	COL16A1	1	32167794	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	45145	32167794	217082827	54	3416										
BSDC1	0	genome.wustl.edu	37	chr1	32842047	32842047	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggggtgagggtccagtctcAcccacatccacagccaggcc	13	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	32842047	32842047	A	C	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	silent	c.1023	p.G341	0.921	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	114	1	0.86	55	14	20.29	-	-	-	C	32842047	A	C	32842047	2	2	67	1	0	0	0	0	0	0	0	1	1536	146	6	5		5	BSDC1	1	32842047	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	674253	32842047	216408574	55	3417										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33116282	33116282	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgacctactttagtccctAccctgccgcttggatcgcat	8	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	33116282	33116282	A	C	SNP	ZBTB8OS	ENST00000479075	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261	37	0	0	30	11	26.83	-	-	-	C	33116282	A	C	33116282	1	2	67	0	1	0	0	0	0	0	0	0	17653	406	14	5		5	ZBTB8OS	1	33116282	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	274235	33116282	216134339	56	3418										
CSMD2	0	genome.wustl.edu	37	chr1	33999409	33999409	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactcacggacacagtcaggTggggttccactccaggtcag	12	13	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	33999409	33999409	T	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.9978	p.P3326	0.909	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	181	1	0.55	132	21	13.73	-	-	-	G	33999409	T	G	33999409	2	3	67	1	0	0	0	0	0	0	0	1	3977	1683	59	5		5	CSMD2	1	33999409	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	883127	33999409	215251212	57	3419										
CSMD2	0	genome.wustl.edu	37	chr1	34192158	34192158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacaagcacctgtcgaaggTgattttgatggggtagcctg	13	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	34192158	34192158	T	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.2497	p.T833P	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	103	1	0.94	39	9	18	-	-	-	G	34192158	T	G	34192158	3	3	67	1	0	0	0	0	1	0	0	0	3977	1696	59	5	8302	5	CSMD2	1	34192158	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	192749	34192158	215058463	58	3420										
NCDN	0	genome.wustl.edu	37	chr1	36027994	36027994	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggggtcctgtggcaacaggTggggtcagagaagcagaagg	20	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	36027994	36027994	T	G	SNP	NCDN	ENST00000356090	human	ensembl	69_37n	1	known	missense	c.1145	p.V382G	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129	257	1	0.38	259	50	16.03	-	-	-	G	36027994	T	G	36027994	3	3	67	1	0	0	0	0	1	0	0	0	10286	1710	59	5	1159	5	NCDN	1	36027994	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1835836	36027994	213222627	59	3421										
MRPS15	0	genome.wustl.edu	37	chr1	36921825	36921825	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttggtcacgaatcggcggTgggctcttcggtaatacaga	13	9	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	36921825	36921825	T	G	SNP	MRPS15	ENST00000373116	human	ensembl	69_37n	-1	known	missense	c.599	p.H200P	1.000	NULL	pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	-	no_errors	MRPS15	HGNC	ENSG00000116898	116	0	0	105	38	26.57	-	-	-	G	36921825	T	G	36921825	3	3	67	1	0	0	0	0	1	0	0	0	9897	1696	59	5	182	5	MRPS15	1	36921825	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	893831	36921825	212328796	60	3422										
KIAA0754	0	genome.wustl.edu	37	chr1	39877866	39877866	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtcaaactgaggggaatggTgaggagtgcattgagagggt	18	3	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	39877866	39877866	T	G	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	silent	c.1521	p.G507	0.002	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	138	1	0.72	126	20	13.7	-	-	-	G	39877866	T	G	39877866	2	3	67	1	0	0	0	0	0	0	0	1	8244	1683	59	5		5	KIAA0754	1	39877866	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2956041	39877866	209372755	61	3423										
MACF1	0	genome.wustl.edu	37	chr1	39896408	39896408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcatggagcacaggctggTgttggacacagtgaatgagg	17	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	39896408	39896408	T	G	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.10979	p.V3660G	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	134	0	0	90	23	20.35	-	-	-	G	39896408	T	G	39896408	3	3	67	1	0	0	0	0	1	0	0	0	9211	1696	59	5	17372	5	MACF1	1	39896408	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	18542	39896408	209354213	62	3424										
RIMS3	0	genome.wustl.edu	37	chr1	41092245	41092245	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agactgggacaggcgcctggTgagggatccgagtgtggagt	19	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	41092245	41092245	T	G	SNP	RIMS3	ENST00000372683	human	ensembl	69_37n	-1	known	missense	c.871	p.T291P	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RIMS3	HGNC	ENSG00000117016	132	1	0.75	88	12	12	-	-	-	G	41092245	T	G	41092245	3	3	67	1	0	0	0	0	1	0	0	0	13455	1696	59	5	59	5	RIMS3	1	41092245	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1195837	41092245	208158376	63	3425										
CLDN19	0	genome.wustl.edu	37	chr1	43204090	43204090	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcaggagtgaggggcactcAcctgccaggatgaagagggc	17	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	43204090	43204090	A	C	SNP	CLDN19	ENST00000296387	human	ensembl	69_37n	-1	known	splice_site	c.388+2	e2+2	1.000	-	-	-	no_errors	CLDN19	HGNC	ENSG00000164007	102	1	0.94	34	7	17.07	-	-	-	C	43204090	A	C	43204090	5	2	67	1	0	0	0	0	0	0	1	0	3510	173	6	5	416	5	CLDN19	1	43204090	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2111845	43204090	206046531	64	3426										
LEPRE1	0	genome.wustl.edu	37	chr1	43212516	43212516	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcaccaggtcatctgcctgcAccctgtcctgcaaggacaaa	8	15	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	43212516	43212516	A	C	SNP	LEPRE1	ENST00000296388	human	ensembl	69_37n	-1	known	missense	c.2063	p.V688G	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	134	1	0.74	57	13	18.57	-	-	-	C	43212516	A	C	43212516	3	2	67	1	0	0	0	0	1	0	0	0	8783	159	6	5	151	5	LEPRE1	1	43212516	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8426	43212516	206038105	65	3427										
LEPRE1	0	genome.wustl.edu	37	chr1	43213887	43213887	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacctgtagtcgcggaaggTgtaggctgggggctctttga	16	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	43213887	43213887	T	G	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1822	p.T608P	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	142	0	0	95	21	17.95	-	-	-	G	43213887	T	G	43213887	3	3	67	1	0	0	0	0	1	0	0	0	8783	1696	59	5	423	5	LEPRE1	1	43213887	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1371	43213887	206036734	66	3428										
MPL	0	genome.wustl.edu	37	chr1	43818359	43818359	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgcccctgtctgtgtgcccAcccatggctgagtcagggtc	12	14	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	43818359	43818359	A	C	SNP	MPL	ENST00000372470	human	ensembl	69_37n	1	known	silent	c.1824	p.P608	0.378	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400	120	1	0.81	84	18	17.65	-	-	-	C	43818359	A	C	43818359	2	2	67	1	0	0	0	0	0	0	0	1	9802	146	6	5		5	MPL	1	43818359	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	604472	43818359	205432262	67	3429										
MED8	0	genome.wustl.edu	37	chr1	43850137	43850137	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcttcaccagagctgcaggTgggcatttttttttccttcc	9	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	43850137	43850137	T	G	SNP	MED8	ENST00000290663	human	ensembl	69_37n	-1	known	missense	c.890	p.H297P	0.000	NULL	pfam_Mediatior_Med8_fun/met	-	no_errors	MED8	HGNC	ENSG00000159479	268	0	0	117	26	17.81	-	-	-	G	43850137	T	G	43850137	3	3	67	1	0	0	0	0	1	0	0	0	9524	1696	59	5	19	5	MED8	1	43850137	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	31778	43850137	205400484	68	3430										
KDM4A	0	genome.wustl.edu	37	chr1	44134925	44134925	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctcgcccctgtgaggcccAcccatagctctgtgcggcaa	10	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	44134925	44134925	A	C	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.1318	p.T440P	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	117	0	0	85	11	11.46	-	-	-	C	44134925	A	C	44134925	3	2	67	1	0	0	0	0	1	0	0	0	8182	159	6	5	1352	5	KDM4A	1	44134925	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	284788	44134925	205115696	69	3431										
IPO13	0	genome.wustl.edu	37	chr1	44433375	44433375	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggtgcccccatcccatccAccccttctcttcatccttcc	5	21	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	44433375	44433375	A	C	SNP	IPO13	ENST00000483886	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	IPO13	HGNC	ENSG00000117408	88	0	0	49	14	22.22	-	-	-	C	44433375	A	C	44433375	1	2	67	0	1	0	0	0	0	0	0	0	7848	174	6	5		5	IPO13	1	44433375	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	298450	44433375	204817246	70	3432										
RNF220	0	genome.wustl.edu	37	chr1	45092077	45092077	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagacagataccaggtgaggAggggtggtgagtggccatga	18	6	0	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45092077	45092077	A	G	SNP	RNF220	ENST00000496262	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.955	-	-	-	no_errors	RNF220	HGNC	ENSG00000187147	72	0	0	65	13	16.67	-	-	-	G	45092077	A	G	45092077	1	3	67	0	1	0	0	0	0	0	0	0	13569	319	11	5		5	RNF220	1	45092077	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	658702	45092077	204158544	71	3433										
BTBD19	0	genome.wustl.edu	37	chr1	45277772	45277772	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtttgtgaggccctgcaggTgggtgctgctggacaggcat	18	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45277772	45277772	T	G	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	1	known	splice_site	c.414+2	e4+2	1.000	-	-	-	no_errors	BTBD19	HGNC	ENSG00000222009	277	2	0.71	312	46	12.78	-	-	-	G	45277772	T	G	45277772	5	3	67	1	0	0	0	0	0	0	1	0	1551	1710	59	5	430	5	BTBD19	1	45277772	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	185695	45277772	203972849	72	3434										
HECTD3	0	genome.wustl.edu	37	chr1	45475954	45475954	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgagtatgtcaggtccaccAcctgttcccacctgtgggca							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45475954	45475954	A	C	SNP	HECTD3	ENST00000372172	human	ensembl	69_37n	-1	known	missense	c.542	p.V181G	1.000	superfamily_Galactose-bd-like	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107	118	1	0.83	86	26	23.01	-	-	-	C	45475954	A	C	45475954	3	2	67	1	0	0	0	0	1	0	0	0	7092	159	6	5	2119	5	HECTD3	1	45475954	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	198182	45475954	203774667	73	3435	28	2								
HECTD3	0	genome.wustl.edu	37	chr1	45475964	45475964	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggtccaccacctgttcccAcctgtgggcacagagtaggg							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45475964	45475964	A	C	SNP	HECTD3	ENST00000372172	human	ensembl	69_37n	-1	known	missense	c.532	p.W178G	1.000	superfamily_Galactose-bd-like	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107	121	1	0.79	99	20	16.81	-	-	-	C	45475964	A	C	45475964	3	2	67	1	0	0	0	0	1	0	0	0	7092	173	6	5	2129	5	HECTD3	1	45475964	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10	45475964	203774657	74	3436	28	2								
MUTYH	0	genome.wustl.edu	37	chr1	45796868	45796868	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tagtgcctttttcatggcggTggaaacagctgcggtgtgaa	14	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45796868	45796868	T	G	SNP	MUTYH	ENST00000450313	human	ensembl	69_37n	-1	known	missense	c.1462	p.T488P	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781	109	1	0.91	78	28	26.42	-	-	-	G	45796868	T	G	45796868	3	3	67	1	0	0	0	0	1	0	0	0	10065	1696	59	5	199	5	MUTYH	1	45796868	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	320904	45796868	203453753	75	3437										
TESK2	0	genome.wustl.edu	37	chr1	45810737	45810737	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggcagatgcccggaatggTgggatctctttaactctgta	13	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	45810737	45810737	T	G	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	silent	c.1491	p.P497	0.780	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	182	0	0	114	18	13.64	-	-	-	G	45810737	T	G	45810737	2	3	67	1	0	0	0	0	0	0	0	1	15863	1683	59	5		5	TESK2	1	45810737	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	13869	45810737	203439884	76	3438										
MKNK1	0	genome.wustl.edu	37	chr1	47027166	47027166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcaccccctgcacccatgggTgctgcagaacttgggcggcg	13	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	47027166	47027166	T	G	SNP	MKNK1	ENST00000371946	human	ensembl	69_37n	-1	known	missense	c.1112	p.H371P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277	130	0	0	83	15	15.15	-	-	-	G	47027166	T	G	47027166	3	3	67	1	0	0	0	0	1	0	0	0	9675	1696	59	5	297	5	MKNK1	1	47027166	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1216429	47027166	202223455	77	3439										
CYP4X1	0	genome.wustl.edu	37	chr1	47512151	47512151	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcacagggaccagctgggTgagatgtcgtacaccacaat	11	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	47512151	47512151	T	G	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	1	known	silent	c.1086	p.G362	0.004	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	119	0	0	117	27	18.75	-	-	-	G	47512151	T	G	47512151	2	3	67	1	0	0	0	0	0	0	0	1	4224	1683	59	5		5	CYP4X1	1	47512151	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	484985	47512151	201738470	78	3440										
TTC39A	0	genome.wustl.edu	37	chr1	51760091	51760091	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcactggcagcgagatagggTtggaggagaagtagcgccgg	19	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	51760091	51760091	T	G	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	missense	c.1346	p.N449T	0.786	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	125	0	0	66	18	21.43	-	-	-	G	51760091	T	G	51760091	3	3	67	1	0	0	0	0	1	0	0	0	16804	1725	60	5	515	5	TTC39A	1	51760091	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4247940	51760091	197490530	79	3441										
SCP2	0	genome.wustl.edu	37	chr1	53504674	53504674	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtaaagaggccacctgggTggtggatgtgaagaatggca	18	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	53504674	53504674	T	G	SNP	SCP2	ENST00000371514	human	ensembl	69_37n	1	known	missense	c.1424	p.V475G	1.000	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,pfam_Thiolase_C,pfam_Thiolase_N,superfamily_Thiolase-like,superfamily_SCP2_sterol-bd_dom	-	no_errors	SCP2	HGNC	ENSG00000116171	282	2	0.7	156	22	12.36	-	-	-	G	53504674	T	G	53504674	3	3	67	1	0	0	0	0	1	0	0	0	14022	1696	59	5	1502	5	SCP2	1	53504674	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1744583	53504674	195745947	80	3442										
FAM151A	0	genome.wustl.edu	37	chr1	55088966	55088966	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctacctggccgccgcagggTgatggcaaggactattgcgg	15	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	55088966	55088966	T	G	SNP	FAM151A	ENST00000302250	human	ensembl	69_37n	-1	known	missense	c.103	p.T35P	0.000	NULL	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	106	1	0.92	74	24	24.24	-	-	-	G	55088966	T	G	55088966	3	3	67	1	0	0	0	0	1	0	0	0	5498	1696	59	5	1686	5	FAM151A	1	55088966	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1584292	55088966	194161655	81	3443										
FGGY	0	genome.wustl.edu	37	chr1	60139738	60139738	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggtcctgtcgcaagaggTggagtccgttcttgtgggtg	17	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	60139738	60139738	T	G	SNP	FGGY	ENST00000303721	human	ensembl	69_37n	1	known	missense	c.1445	p.V482G	1.000	pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456	236	1	0.42	210	33	13.52	-	-	-	G	60139738	T	G	60139738	3	3	67	1	0	0	0	0	1	0	0	0	5917	1696	59	5	1571	5	FGGY	1	60139738	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5050772	60139738	189110883	82	3444										
CACHD1	0	genome.wustl.edu	37	chr1	65145336	65145336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgtgggtcctgtggctggAgggatcatgggatgcatcat	16	8	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	65145336	65145336	A	G	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	silent	c.3303	p.G1101	0.943	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	176	1	0.56	114	23	16.79	-	-	-	G	65145336	A	G	65145336	2	3	67	1	0	0	0	0	0	0	0	1	2562	291	11	5		5	CACHD1	1	65145336	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5005598	65145336	184105285	83	3445										
NEGR1	0	genome.wustl.edu	37	chr1	72748125	72748125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acaggctgaggagcaccgccGccagccactggttcgagcaa	13	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	72748125	72748125	G	C	SNP	NEGR1	ENST00000357731	human	ensembl	69_37n	-1	known	missense	c.53	p.A18G	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NEGR1	HGNC	ENSG00000172260	108	1	0.91	40	14	25.93	-	-	-	C	72748125	G	C	72748125	3	2	67	1	0	0	0	0	1	0	0	0	10389	1087	38	3	1039	3	NEGR1	1	72748125	Missense_Mutation	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	7602789	72748125	176502496	84	3446										
MCOLN2	0	genome.wustl.edu	37	chr1	85405307	85405307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgataatcaccaggacatAccagccgttgatgaactccc	8	13	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	85405307	85405307	A	C	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1039	p.Y347D	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	152	0	0	81	31	27.68	-	-	-	C	85405307	A	C	85405307	3	2	67	1	0	0	0	0	1	0	0	0	9467	391	14	5	685	5	MCOLN2	1	85405307	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12657182	85405307	163845314	85	3447										
GBP7	0	genome.wustl.edu	37	chr1	89618372	89618372	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagctgctccagggcctggTggttgatggtgcccatgctg	16	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	89618372	89618372	T	G	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.407	p.H136P	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	218	2	0.89	228	35	13.26	-	-	-	G	89618372	T	G	89618372	3	3	67	1	0	0	0	0	1	0	0	0	6329	1696	59	5	1541	5	GBP7	1	89618372	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4213065	89618372	159632249	86	3448										
GBP4	0	genome.wustl.edu	37	chr1	89659007	89659007	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagctgctccagggcctggTggttgatggtgctcacgctg	16	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	89659007	89659007	T	G	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.452	p.H151P	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	252	1	0.39	242	30	10.99	-	-	-	G	89659007	T	G	89659007	3	3	67	1	0	0	0	0	1	0	0	0	6326	1696	59	5	1502	5	GBP4	1	89659007	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	40635	89659007	159591614	87	3449										
COL11A1	0	genome.wustl.edu	37	chr1	103468816	103468816	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccttggacccagcaaaccTcgtgggccctaggagaaaaa	10	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	103468816	103468816	T	C	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	silent	c.1989	p.R663	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	104	0	0	89	13	12.75	-	-	-	C	103468816	T	C	103468816	2	2	67	1	0	0	0	0	0	0	0	1	3697	1538	54	5		5	COL11A1	1	103468816	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	13809809	103468816	145781805	88	3450										
AKNAD1	0	genome.wustl.edu	37	chr1	109365853	109365853	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggatttggaagtgtcaggTgagtgcacaagacctgggca	15	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	109365853	109365853	T	G	SNP	AKNAD1	ENST00000369995	human	ensembl	69_37n	-1	known	silent	c.2208	p.S736	0.001	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	85	0	0	59	23	28.05	-	-	-	G	109365853	T	G	109365853	2	3	67	1	0	0	0	0	0	0	0	1	464	1711	59	5		5	AKNAD1	1	109365853	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5897037	109365853	139884768	89	3451										
KIAA1324	0	genome.wustl.edu	37	chr1	109735438	109735438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taacacaattctgaaagcccAccagccttatggtgtccagg	8	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	109735438	109735438	A	C	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	missense	c.1889	p.H630P	1.000	superfamily_Growth_fac_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	124	0	0	119	19	13.77	-	-	-	C	109735438	A	C	109735438	3	2	67	1	0	0	0	0	1	0	0	0	8275	159	6	5	1943	5	KIAA1324	1	109735438	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	369585	109735438	139515183	90	3452										
CELSR2	0	genome.wustl.edu	37	chr1	109816541	109816541	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaggatggggagctgggggTgctttcctgtttccttcgtc	17	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	109816541	109816541	T	G	SNP	CELSR2	ENST00000498157	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.769	-	-	-	no_errors	CELSR2	HGNC	ENSG00000143126	84	0	0	116	33	22.15	-	-	-	G	109816541	T	G	109816541	1	3	67	0	1	0	0	0	0	0	0	0	3251	1711	59	5		5	CELSR2	1	109816541	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	81103	109816541	139434080	91	3453										
AMIGO1	0	genome.wustl.edu	37	chr1	110050151	110050151	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcctcaggcactggcagggTgttgcctggcttgagcttgc	16	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	110050151	110050151	T	G	SNP	AMIGO1	ENST00000369862	human	ensembl	69_37n	-1	known	missense	c.1384	p.T462P	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMIGO1	HGNC	ENSG00000181754	102	1	0.96	45	12	21.05	-	-	-	G	110050151	T	G	110050151	3	3	67	1	0	0	0	0	1	0	0	0	575	1696	59	5	101	5	AMIGO1	1	110050151	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	233610	110050151	139200470	92	3454										
GSTM5	0	genome.wustl.edu	37	chr1	110256410	110256410	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccacaccccactcccagtcAcccatttccctgccttttgg	4	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	110256410	110256410	A	C	SNP	GSTM5	ENST00000492718	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GSTM5	HGNC	ENSG00000134201	306	2	0.65	274	32	10.46	-	-	-	C	110256410	A	C	110256410	1	2	67	0	1	0	0	0	0	0	0	0	6892	174	6	5		5	GSTM5	1	110256410	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	206259	110256410	138994211	93	3455										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112999854	112999854	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgagagaggaaaccctccAcccatcccacccaagaaacc	7	17	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	112999854	112999854	A	C	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	silent	c.1740	p.P580	0.995	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	205	2	0.96	117	24	17.02	-	-	-	C	112999854	A	C	112999854	2	2	67	1	0	0	0	0	0	0	0	1	4078	146	6	5		5	CTTNBP2NL	1	112999854	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2743444	112999854	136250767	94	3456										
DENND2C	0	genome.wustl.edu	37	chr1	115127989	115127989	+	RNA	DEL	A	A	-													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacatagaaaaggctgctatAaaaaaaaaatggagacagag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	115127989	115127989	A	-	DEL	DENND2C	ENST00000495031	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DENND2C	HGNC	ENSG00000175984	13	0	0	4	2	33.33	-	-	-	-	115127989	A	-	115127989	6	5	67	0	1	1	0	1	0	0	0	0	4466	377	13	0		0	DENND2C	1	115127989	RNA	DEL	A	TCGA-A2-A0T5-01A-21D-A099-09	2128135	115127989	134122632	95	3457										
ATP1A1	0	genome.wustl.edu	37	chr1	116947044	116947044	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttgccacccacaggctgggTggagaaggaaacctactatt	11	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	116947044	116947044	T	G	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.3050	p.V1017G	1.000	tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	115	0	0	116	25	17.61	-	-	-	G	116947044	T	G	116947044	3	3	67	1	0	0	0	0	1	0	0	0	1132	1696	59	5	3156	5	ATP1A1	1	116947044	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1819055	116947044	132303577	96	3458										
CD101	0	genome.wustl.edu	37	chr1	117552610	117552610	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcatttccagtggtctgtttAcctgccgacaaacccgaccc	8	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	117552610	117552610	A	C	SNP	CD101	ENST00000256652	human	ensembl	69_37n	1	known	missense	c.182	p.Y61S	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD101	HGNC	ENSG00000134256	146	0	0	72	17	19.1	-	-	-	C	117552610	A	C	117552610	3	2	67	1	0	0	0	0	1	0	0	0	2991	391	14	5	188	5	CD101	1	117552610	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	605566	117552610	131698011	97	3459										
ITGA10	0	genome.wustl.edu	37	chr1	145537542	145537542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catcttctctagaaacctccAcctggccagtctcactcctc	4	18	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	145537542	145537542	A	C	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.2552	p.H851P	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	106	0	0	146	22	13.02	-	-	-	C	145537542	A	C	145537542	3	2	67	1	0	0	0	0	1	0	0	0	7927	159	6	5	2630	5	ITGA10	1	145537542	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	27984932	145537542	103713079	98	3460										
PIAS3	0	genome.wustl.edu	37	chr1	145578473	145578473	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggagctcatccggcccaccAcccttggtatggctctttgt	11	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	145578473	145578473	A	C	SNP	PIAS3	ENST00000393045	human	ensembl	69_37n	1	known	missense	c.436	p.T146P	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS3	HGNC	ENSG00000131788	171	1	0.57	247	28	10.11	-	-	-	C	145578473	A	C	145578473	3	2	67	1	0	0	0	0	1	0	0	0	11951	159	6	5	442	5	PIAS3	1	145578473	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	40931	145578473	103672148	99	3461										
PIAS3	0	genome.wustl.edu	37	chr1	145585438	145585438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtaccgagggaccccttctcActttctgggcccactggccc	10	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	145585438	145585438	A	C	SNP	PIAS3	ENST00000393045	human	ensembl	69_37n	1	known	missense	c.1703	p.H568P	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS3	HGNC	ENSG00000131788	49	0	0	108	21	16.28	-	-	-	C	145585438	A	C	145585438	3	2	67	1	0	0	0	0	1	0	0	0	11951	159	6	5	1757	5	PIAS3	1	145585438	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6965	145585438	103665183	100	3462										
GJA8	0	genome.wustl.edu	37	chr1	147381059	147381059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actgccttcctacgctcaggTgggggcacaagaagtggagg	15	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	147381059	147381059	T	G	SNP	GJA8	ENST00000240986	human	ensembl	69_37n	1	known	missense	c.977	p.V326G	1.000	pfam_Connexin50,prints_Connexin50	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634	95	0	0	88	16	15.24	-	-	-	G	147381059	T	G	147381059	3	3	67	1	0	0	0	0	1	0	0	0	6457	1696	59	5	979	5	GJA8	1	147381059	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1795621	147381059	101869562	101	3463										
MTMR11	0	genome.wustl.edu	37	chr1	149908534	149908534	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actctggccccggcccccccAccacatttctctggctccat	6	21	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	149908534	149908534	A	C	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.7	p.W3G	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	87	0	0	367	61	14.09	-	-	-	C	149908534	A	C	149908534	3	2	67	1	0	0	0	0	1	0	0	0	10012	159	6	5	2229	5	MTMR11	1	149908534	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2527475	149908534	99342087	102	3464										
OTUD7B	0	genome.wustl.edu	37	chr1	149939361	149939361	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtgctcattgctccccccAcccccaccattggaggagac	10	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	149939361	149939361	A	C	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	silent	c.360	p.G120	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	99	0	0	120	29	19.21	-	-	-	C	149939361	A	C	149939361	2	2	67	1	0	0	0	0	0	0	0	1	11392	146	6	5		5	OTUD7B	1	149939361	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	30827	149939361	99311260	103	3465										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150532616	150532616	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctacccctactacacagccAcctgttgccgctcttgcgca	6	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	150532616	150532616	A	C	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	missense	c.3238	p.T1080P	1.000	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	134	0	0	140	24	14.55	-	-	-	C	150532616	A	C	150532616	3	2	67	1	0	0	0	0	1	0	0	0	277	159	6	5	3310	5	ADAMTSL4	1	150532616	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	593255	150532616	98718005	104	3466										
FAM63A	0	genome.wustl.edu	37	chr1	150972391	150972391	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcaggtgatgatcctctccAccagctggttgtaactcagt	10	11	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	150972391	150972391	A	C	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.929	p.V310G	1.000	pfam_DUF544	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	128	1	0.77	219	35	13.78	-	-	-	C	150972391	A	C	150972391	3	2	67	1	0	0	0	0	1	0	0	0	5641	159	6	5	644	5	FAM63A	1	150972391	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	439775	150972391	98278230	105	3467										
SEMA6C	0	genome.wustl.edu	37	chr1	151110189	151110189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgatgcccacctccttacccTccccagccgagcatcctcca	5	21	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	151110189	151110189	T	C	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.754	p.R252G	0.781	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	144	0	0	221	34	13.28	-	-	-	C	151110189	T	C	151110189	3	2	67	1	0	0	0	0	1	0	0	0	14129	1550	54	5	2178	5	SEMA6C	1	151110189	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	137798	151110189	98140432	106	3468										
SEMA6C	0	genome.wustl.edu	37	chr1	151110819	151110819	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatggccacgttggactgggTggcatcaaaggggcatcgag	17	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	151110819	151110819	T	G	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.520	p.T174P	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	153	0	0	134	18	11.84	-	-	-	G	151110819	T	G	151110819	3	3	67	1	0	0	0	0	1	0	0	0	14129	1696	59	5	2420	5	SEMA6C	1	151110819	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	630	151110819	98139802	107	3469										
SCNM1	0	genome.wustl.edu	37	chr1	151140804	151140804	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagccctggaccattatctcAcccttcgaaggtgagtatgc	10	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	151140804	151140804	A	C	SNP	SCNM1	ENST00000368905	human	ensembl	69_37n	1	known	missense	c.583	p.T195P	0.731	NULL	NULL	-	no_errors	SCNM1	HGNC	ENSG00000163156	250	1	0.4	253	40	13.56	-	-	-	C	151140804	A	C	151140804	3	2	67	1	0	0	0	0	1	0	0	0	14014	159	6	5	605	5	SCNM1	1	151140804	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	29985	151140804	98109817	108	3470										
PI4KB	0	genome.wustl.edu	37	chr1	151274374	151274374	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttgccgaaggtcatccccAcacttgacaatgactgacag	8	13	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	151274374	151274374	A	C	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	missense	c.1731	p.C577W	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	125	1	0.79	159	23	12.64	-	-	-	C	151274374	A	C	151274374	3	2	67	1	0	0	0	0	1	0	0	0	11948	157	6	5	775	5	PI4KB	1	151274374	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	133570	151274374	97976247	109	3471										
SPRR1A	0	genome.wustl.edu	37	chr1	152957748	152957748	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagccttgcaccccacccccTcagcctcagcagcagcaggt	8	20	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	152957748	152957748	T	C	SNP	SPRR1A	ENST00000307122	human	ensembl	69_37n	1	known	silent	c.42	p.P14	0.363	NULL	pfam_Cornifin	-	no_errors	SPRR1A	HGNC	ENSG00000169474	243	0	0	304	41	11.85	-	-	-	C	152957748	T	C	152957748	2	2	67	1	0	0	0	0	0	0	0	1	15186	1538	54	5		5	SPRR1A	1	152957748	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1683374	152957748	96292873	110	3472										
S100A6	0	genome.wustl.edu	37	chr1	153507644	153507644	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcttccaaaggacaagggTgggaaaaggggtcctgggga	17	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	153507644	153507644	T	G	SNP	S100A6	ENST00000462951	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A6	HGNC	ENSG00000197956	109	0	0	168	30	15.15	-	-	-	G	153507644	T	G	153507644	1	3	67	0	1	0	0	0	0	0	0	0	13868	1711	59	5		5	S100A6	1	153507644	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	549896	153507644	95742977	111	3473										
S100A4	0	genome.wustl.edu	37	chr1	153516160	153516160	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgtctgaaggagccagggTggaaaaaaaaaagtgcccac	13	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	153516160	153516160	T	G	SNP	S100A4	ENST00000468373	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A4	HGNC	ENSG00000196154	57	0	0	77	14	15.05	-	-	-	G	153516160	T	G	153516160	1	3	67	0	1	0	0	0	0	0	0	0	13866	1711	59	5		5	S100A4	1	153516160	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8516	153516160	95734461	112	3474										
S100A2	0	genome.wustl.edu	37	chr1	153534000	153534000	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcatactcctggaagtccAcctgctggtcactgttctca	8	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	153534000	153534000	A	C	SNP	S100A2	ENST00000368707	human	ensembl	69_37n	-1	known	missense	c.332	p.V111G	1.000	pfscan_EF_HAND_2	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	S100A2	HGNC	ENSG00000196754	188	1	0.53	216	31	12.4	-	-	-	C	153534000	A	C	153534000	3	2	67	1	0	0	0	0	1	0	0	0	13864	159	6	5	88	5	S100A2	1	153534000	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	17840	153534000	95716621	113	3475										
AQP10	0	genome.wustl.edu	37	chr1	154296774	154296774	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagtgctggtaatggctggTggtgggtgcctgtggtggcc	20	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154296774	154296774	T	G	SNP	AQP10	ENST00000324978	human	ensembl	69_37n	1	known	missense	c.724	p.W242G	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP10	HGNC	ENSG00000143595	25	0	0	6	6	50	-	-	-	G	154296774	T	G	154296774	3	3	67	1	0	0	0	0	1	0	0	0	824	1696	59	5	746	5	AQP10	1	154296774	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	762774	154296774	94953847	114	3476										
ATP8B2	0	genome.wustl.edu	37	chr1	154309891	154309891	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccatctgggagcacgaggTggggatgcgtttccaggtct	16	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154309891	154309891	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.1004	p.V335G	0.986	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	205	2	0.97	378	53	12.27	-	-	-	G	154309891	T	G	154309891	3	3	67	1	0	0	0	0	1	0	0	0	1199	1696	59	5	1050	5	ATP8B2	1	154309891	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	13117	154309891	94940730	115	3477										
ATP8B2	0	genome.wustl.edu	37	chr1	154317550	154317550	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccttgcagaaggcacaggTggtagaactggtcaagaagt	13	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154317550	154317550	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.2489	p.V830G	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	151	1	0.66	168	30	15	-	-	-	G	154317550	T	G	154317550	3	3	67	1	0	0	0	0	1	0	0	0	1199	1696	59	5	2705	5	ATP8B2	1	154317550	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7659	154317550	94933071	116	3478										
UBE2Q1	0	genome.wustl.edu	37	chr1	154525277	154525277	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcagccggtcagtggcctgcAccgagccagacactgcaccc	11	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154525277	154525277	A	C	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	missense	c.749	p.V250G	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	103	1	0.96	123	23	15.75	-	-	-	C	154525277	A	C	154525277	3	2	67	1	0	0	0	0	1	0	0	0	16966	159	6	5	551	5	UBE2Q1	1	154525277	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	207727	154525277	94725344	117	3479										
PBXIP1	0	genome.wustl.edu	37	chr1	154918515	154918515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagaggagtggaagctaccActtttccttgggggttcctt	12	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154918515	154918515	A	C	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	missense	c.1635	p.S545R	0.844	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	129	1	0.76	195	22	10.09	-	-	-	C	154918515	A	C	154918515	3	2	67	1	0	0	0	0	1	0	0	0	11569	156	6	5	568	5	PBXIP1	1	154918515	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	393238	154918515	94332106	118	3480										
DCST2	0	genome.wustl.edu	37	chr1	154991032	154991032	+	Silent	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttttggtttatttggggggTgggtgggaaggatcaggaag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154991032	154991032	T	G	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	silent	c.2310	p.P770	0.002	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	147	0	0	284	49	14.71	-	-	-	G	154991032	T	G	154991032	2	3	67	1	0	0	0	0	0	0	0	1	4334	1683	59	5		5	DCST2	1	154991032	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	72517	154991032	94259589	119	3481	29	2								
DCST2	0	genome.wustl.edu	37	chr1	154991036	154991036	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtttatttggggggtgggTgggaaggatcaggaagagag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	154991036	154991036	T	G	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	missense	c.2306	p.H769P	0.377	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	153	1	0.65	285	62	17.82	-	-	-	G	154991036	T	G	154991036	3	3	67	1	0	0	0	0	1	0	0	0	4334	1696	59	5	19	5	DCST2	1	154991036	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4	154991036	94259585	120	3482	29	2								
ADAM15	0	genome.wustl.edu	37	chr1	155026888	155026888	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcgcgaatccaagatctccAcctgccaggccacacctgtg	8	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	155026888	155026888	A	C	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	missense	c.518	p.H173P	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	33	0	0	54	19	25.68	-	-	-	C	155026888	A	C	155026888	3	2	67	1	0	0	0	0	1	0	0	0	237	159	6	5	540	5	ADAM15	1	155026888	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	35852	155026888	94223733	121	3483										
ADAM15	0	genome.wustl.edu	37	chr1	155028502	155028502	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctggacagggcaacccccAccccaggcccctgaccatgg	11	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	155028502	155028502	A	C	SNP	ADAM15	ENST00000470779	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	ADAM15	HGNC	ENSG00000143537	123	0	0	128	25	16.13	-	-	-	C	155028502	A	C	155028502	1	2	67	0	1	0	0	0	0	0	0	0	237	174	6	5		5	ADAM15	1	155028502	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1614	155028502	94222119	122	3484										
SMG5	0	genome.wustl.edu	37	chr1	156235762	156235762	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctagcctcactggggcccagTgggccattgagggaatcggg	16	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156235762	156235762	T	G	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	silent	c.1665	p.P555	0.116	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	101	1	0.98	137	21	13.29	-	-	-	G	156235762	T	G	156235762	2	3	67	1	0	0	0	0	0	0	0	1	14885	1683	59	5		5	SMG5	1	156235762	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1207260	156235762	93014859	123	3485										
C1orf85	0	genome.wustl.edu	37	chr1	156264657	156264657	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctccagttgacgctcagggTgctgtggggggtgttggtgg	20	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156264657	156264657	T	G	SNP	C1orf85	ENST00000362007	human	ensembl	69_37n	-1	known	missense	c.271	p.T91P	0.003	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715	137	0	0	124	24	16	-	-	-	G	156264657	T	G	156264657	3	3	67	1	0	0	0	0	1	0	0	0	2082	1696	59	5	969	5	C1orf85	1	156264657	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28895	156264657	92985964	124	3486										
RHBG	0	genome.wustl.edu	37	chr1	156351626	156351626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaaatgcagcgctggctggAggggttgtggtggggacctc	18	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156351626	156351626	A	G	SNP	RHBG	ENST00000368246	human	ensembl	69_37n	1	known	silent	c.870	p.G290	0.993	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	288	1	0.35	497	61	10.93	-	-	-	G	156351626	A	G	156351626	2	3	67	1	0	0	0	0	0	0	0	1	13408	291	11	5		5	RHBG	1	156351626	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	86969	156351626	92898995	125	3487										
NES	0	genome.wustl.edu	37	chr1	156642723	156642723	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctggagcctgtttcctcccAccctgtgtctggagcagaga	11	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156642723	156642723	A	C	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	silent	c.1257	p.G419	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	64	0	0	96	11	10.19	-	-	-	C	156642723	A	C	156642723	2	2	67	1	0	0	0	0	0	0	0	1	10409	146	6	5		5	NES	1	156642723	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	291097	156642723	92607898	126	3488										
HDGF	0	genome.wustl.edu	37	chr1	156721133	156721133	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcggcgggccgcgctgctcAcccgggccggccagtgtggg	20	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156721133	156721133	A	C	SNP	HDGF	ENST00000357325	human	ensembl	69_37n	-1	known	splice_site	c.87+2	e1+2	1.000	-	-	-	no_errors	HDGF	HGNC	ENSG00000143321	19	0	0	37	15	28.85	-	-	-	C	156721133	A	C	156721133	5	2	67	1	0	0	0	0	0	0	1	0	7069	173	6	5	657	5	HDGF	1	156721133	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	78410	156721133	92529488	127	3489										
SH2D2A	0	genome.wustl.edu	37	chr1	156784763	156784763	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcatctattcctggcaggTggcaggacccagacccagga	11	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	156784763	156784763	T	G	SNP	SH2D2A	ENST00000495306	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH2D2A	HGNC	ENSG00000027869	28	0	0	26	7	21.21	-	-	-	G	156784763	T	G	156784763	1	3	67	0	1	0	0	0	0	0	0	0	14320	1711	59	5		5	SH2D2A	1	156784763	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	63630	156784763	92465858	128	3490										
OR10K2	0	genome.wustl.edu	37	chr1	158390163	158390163	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggaggaataaaaaggcaggTgaaataccaaggatgtgatg	14	3	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	158390163	158390163	T	G	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	missense	c.494	p.H165P	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	232	0	0	339	42	10.94	-	-	-	G	158390163	T	G	158390163	3	3	67	1	0	0	0	0	1	0	0	0	10987	1696	59	5	446	5	OR10K2	1	158390163	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1605400	158390163	90860458	129	3491										
IGSF9	0	genome.wustl.edu	37	chr1	159904305	159904305	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccggcatcatcaggctgggTggccagcagccgcaggctcc	15	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	159904305	159904305	T	G	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	missense	c.871	p.T291P	0.002	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	66	0	0	65	17	20.73	-	-	-	G	159904305	T	G	159904305	3	3	67	1	0	0	0	0	1	0	0	0	7659	1696	59	5	2724	5	IGSF9	1	159904305	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1514142	159904305	89346316	130	3492										
CD244	0	genome.wustl.edu	37	chr1	160808898	160808898	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgctctcttcttccttcccAcctgcctgctgcaggggctg	9	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	160808898	160808898	A	C	SNP	CD244	ENST00000481677	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD244	HGNC	ENSG00000122223	59	0	0	101	34	25.19	-	-	-	C	160808898	A	C	160808898	1	2	67	0	1	0	0	0	0	0	0	0	3016	174	6	5		5	CD244	1	160808898	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	904593	160808898	88441723	131	3493										
GPA33	0	genome.wustl.edu	37	chr1	167059520	167059520	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacaggccacatcttccccAccatggtcttgcttcttctc	5	17	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	167059520	167059520	A	C	SNP	GPA33	ENST00000367868	human	ensembl	69_37n	-1	known	missense	c.5	p.V2G	0.035	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	GPA33	HGNC	ENSG00000143167	233	0	0	343	68	16.39	-	-	-	C	167059520	A	C	167059520	3	2	67	1	0	0	0	0	1	0	0	0	6636	159	6	5	982	5	GPA33	1	167059520	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6250622	167059520	82191101	132	3494										
DUSP27	0	genome.wustl.edu	37	chr1	167086637	167086637	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctgctgaacagctgctggTggaggacctgtacaaccgcg	14	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	167086637	167086637	T	G	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.278	p.V93G	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	115	0	0	141	38	21.23	-	-	-	G	167086637	T	G	167086637	3	3	67	1	0	0	0	0	1	0	0	0	4859	1696	59	5	288	5	DUSP27	1	167086637	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	27117	167086637	82163984	133	3495										
DUSP27	0	genome.wustl.edu	37	chr1	167096167	167096167	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgaaacaccagaagaaggTgggcagtgagaacaaggagg	16	6	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	167096167	167096167	T	G	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.1799	p.V600G	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	121	1	0.81	98	24	19.67	-	-	-	G	167096167	T	G	167096167	3	3	67	1	0	0	0	0	1	0	0	0	4859	1696	59	5	1817	5	DUSP27	1	167096167	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9530	167096167	82154454	134	3496										
DPT	0	genome.wustl.edu	37	chr1	168683555	168683555	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcggctctggaatcctgccAccagcccattgttggagcac	11	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	168683555	168683555	A	C	SNP	DPT	ENST00000367817	human	ensembl	69_37n	-1	known	missense	c.335	p.V112G	1.000	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196	95	0	0	125	17	11.97	-	-	-	C	168683555	A	C	168683555	3	2	67	1	0	0	0	0	1	0	0	0	4774	159	6	5	282	5	DPT	1	168683555	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1587388	168683555	80567066	135	3497										
TNN	0	genome.wustl.edu	37	chr1	175113624	175113624	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgacacatcatggtggctggTggtataagaactgccacttg	12	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	175113624	175113624	T	G	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.3697	p.W1233G	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	162	1	0.61	238	33	12.13	-	-	-	G	175113624	T	G	175113624	3	3	67	1	0	0	0	0	1	0	0	0	16418	1696	59	5	3763	5	TNN	1	175113624	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6430069	175113624	74136997	136	3498										
ASTN1	0	genome.wustl.edu	37	chr1	176992518	176992518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatctctctgacagttacccGctgcccggtgctcccgccta	9	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	176992518	176992518	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1460	p.A487V	0.987	smart_EGF-like	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	49	0	0	65	13	16.67	-	-	-	A	176992518	G	A	176992518	3	1	67	1	0	0	0	0	1	0	0	0	1068	1102	38	1		1	ASTN1	1	176992518	Missense_Mutation	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	1878894	176992518	72258103	137	3499										
SEC16B	0	genome.wustl.edu	37	chr1	177901870	177901870	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcactaacatccggcagaggTggggactcaggggaaggtgt	17	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	177901870	177901870	T	G	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	silent	c.2895	p.P965	0.000	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	104	0	0	122	23	15.86	-	-	-	G	177901870	T	G	177901870	2	3	67	1	0	0	0	0	0	0	0	1	14075	1683	59	5		5	SEC16B	1	177901870	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	909352	177901870	71348751	138	3500										
RGS16	0	genome.wustl.edu	37	chr1	182573364	182573364	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccttacctctccaggcaggTggtggggaaggcggccaggg	17	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	182573364	182573364	T	G	SNP	RGS16	ENST00000367558	human	ensembl	69_37n	-1	known	missense	c.31	p.T11P	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS16	HGNC	ENSG00000143333	44	0	0	77	20	20.62	-	-	-	G	182573364	T	G	182573364	3	3	67	1	0	0	0	0	1	0	0	0	13382	1696	59	5	597	5	RGS16	1	182573364	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4671494	182573364	66677257	139	3501										
GPR25	0	genome.wustl.edu	37	chr1	200842891	200842891	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcgggcccggaggaactcGctgcgcatcatcttcgccat	13	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	200842891	200842891	G	A	SNP	GPR25	ENST00000304244	human	ensembl	69_37n	1	known	silent	c.726	p.S242	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR25	HGNC	ENSG00000170128	10	0	0	23	5	17.24	-	-	-	A	200842891	G	A	200842891	2	1	67	1	0	0	0	0	0	0	0	1	6733	1074	38	1		1	GPR25	1	200842891	Silent	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	18269527	200842891	48407730	140	3502										
C1orf106	0	genome.wustl.edu	37	chr1	200867526	200867526	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctctccttccagaaatccAccatggagagtaaggatgag	9	12	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	200867526	200867526	A	C	SNP	C1orf106	ENST00000367342	human	ensembl	69_37n	1	known	missense	c.253	p.T85P	0.159	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362	77	0	0	244	33	11.87	-	-	-	C	200867526	A	C	200867526	3	2	67	1	0	0	0	0	1	0	0	0	1999	159	6	5	259	5	C1orf106	1	200867526	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	24635	200867526	48383095	141	3503										
KIF21B	0	genome.wustl.edu	37	chr1	200974450	200974450	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcaccaggtcgggctgggTgcacatgcgcatctggcaca	13	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	200974450	200974450	T	G	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.718	p.T240P	0.950	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	88	0	0	121	21	14.79	-	-	-	G	200974450	T	G	200974450	3	3	67	1	0	0	0	0	1	0	0	0	8341	1696	59	5	4276	5	KIF21B	1	200974450	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	106924	200974450	48276171	142	3504										
ELF3	0	genome.wustl.edu	37	chr1	201980364	201980364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctctgttccccctgctgccAcctttggggccgatgacttg	10	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	201980364	201980364	A	C	SNP	ELF3	ENST00000359651	human	ensembl	69_37n	1	known	missense	c.100	p.T34P	0.004	superfamily_SAM/pointed	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF3	HGNC	ENSG00000163435	125	1	0.79	198	31	13.42	-	-	-	C	201980364	A	C	201980364	3	2	67	1	0	0	0	0	1	0	0	0	5092	159	6	5	102	5	ELF3	1	201980364	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1005914	201980364	47270257	143	3505										
LGR6	0	genome.wustl.edu	37	chr1	202272456	202272456	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtttccagatctcaaaggcAccaccagcctggagatcctg							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	202272456	202272456	A	C	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	missense	c.979	p.T327P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	548	4	0.72	212	44	17.19	-	-	-	C	202272456	A	C	202272456	3	2	67	1	0	0	0	0	1	0	0	0	8813	159	6	5	1164	5	LGR6	1	202272456	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	292092	202272456	46978165	144	3506	30	2								
LGR6	0	genome.wustl.edu	37	chr1	202272459	202272459	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttccagatctcaaaggcaccAccagcctggagatcctgtga							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	202272459	202272459	A	C	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	missense	c.982	p.T328P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	560	2	0.35	208	48	18.68	-	-	-	C	202272459	A	C	202272459	3	2	67	1	0	0	0	0	1	0	0	0	8813	159	6	5	1167	5	LGR6	1	202272459	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3	202272459	46978162	145	3507	30	2								
CHI3L1	0	genome.wustl.edu	37	chr1	203152780	203152780	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccagcaccttgattagggTggtaaaatgctgtttgtctc	11	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	203152780	203152780	T	G	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.454	p.T152P	0.108	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	135	1	0.73	221	27	10.84	-	-	-	G	203152780	T	G	203152780	3	3	67	1	0	0	0	0	1	0	0	0	3369	1696	59	5	721	5	CHI3L1	1	203152780	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	880321	203152780	46097841	146	3508										
OPTC	0	genome.wustl.edu	37	chr1	203472130	203472130	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgagcctgcgctctgtacAcctgcaggtaaggagcacca	11	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	203472130	203472130	A	C	SNP	OPTC	ENST00000367222	human	ensembl	69_37n	1	known	missense	c.821	p.H274P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OPTC	HGNC	ENSG00000188770	99	1	1	145	22	13.17	-	-	-	C	203472130	A	C	203472130	3	2	67	1	0	0	0	0	1	0	0	0	10961	159	6	5	839	5	OPTC	1	203472130	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	319350	203472130	45778491	147	3509										
KISS1	0	genome.wustl.edu	37	chr1	204161955	204161955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttctaatggctccccaaagTgggtggcacagaggaaaagc	12	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	204161955	204161955	T	G	SNP	KISS1	ENST00000367194	human	ensembl	69_37n	-1	known	missense	c.50	p.H17P	0.001	NULL	NULL	-	no_errors	KISS1	HGNC	ENSG00000170498	107	1	0.93	174	21	10.66	-	-	-	G	204161955	T	G	204161955	3	3	67	1	0	0	0	0	1	0	0	0	8380	1696	59	5	374	5	KISS1	1	204161955	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	689825	204161955	45088666	148	3510										
PIK3C2B	0	genome.wustl.edu	37	chr1	204409335	204409335	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgacctctgccccggccggTggagaagcagcggaagatga	15	12	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	204409335	204409335	T	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.3364	p.T1122P	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	124	0	0	195	29	12.89	-	-	-	G	204409335	T	G	204409335	3	3	67	1	0	0	0	0	1	0	0	0	11984	1696	59	5	1588	5	PIK3C2B	1	204409335	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	247380	204409335	44841286	149	3511										
TMCC2	0	genome.wustl.edu	37	chr1	205241005	205241005	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagcagcaacagcagcaggTggtacagctggagggcgtgg	18	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	205241005	205241005	T	G	SNP	TMCC2	ENST00000358024	human	ensembl	69_37n	1	known	missense	c.1883	p.V628G	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069	73	0	0	61	14	18.67	-	-	-	G	205241005	T	G	205241005	3	3	67	1	0	0	0	0	1	0	0	0	16088	1696	59	5	1901	5	TMCC2	1	205241005	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	831670	205241005	44009616	150	3512										
MFSD4	0	genome.wustl.edu	37	chr1	205549907	205549907	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caacaccacctcccgaggccAcctgttccatgtctccaggg	8	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	205549907	205549907	A	C	SNP	MFSD4	ENST00000367147	human	ensembl	69_37n	1	known	missense	c.548	p.H183P	0.080	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514	92	0	0	119	31	20.39	-	-	-	C	205549907	A	C	205549907	3	2	67	1	0	0	0	0	1	0	0	0	9604	159	6	5	558	5	MFSD4	1	205549907	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	308902	205549907	43700714	151	3513										
IKBKE	0	genome.wustl.edu	37	chr1	206649605	206649605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catcatgcgcctcgtaggggAggaggggcagagcatctaca	15	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	206649605	206649605	A	G	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.440	p.E147G	0.515	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	133	1	0.75	105	16	13.22	-	-	-	G	206649605	A	G	206649605	3	3	67	1	0	0	0	0	1	0	0	0	7666	304	11	5	454	5	IKBKE	1	206649605	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1099698	206649605	42601016	152	3514										
CD34	0	genome.wustl.edu	37	chr1	208061239	208061239	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagctatagccctggcctccAccgttttccgtgtaataagg	10	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	208061239	208061239	A	C	SNP	CD34	ENST00000310833	human	ensembl	69_37n	-1	known	silent	c.1002	p.G334	1.000	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	101	1	0.98	153	18	10.47	-	-	-	C	208061239	A	C	208061239	2	2	67	1	0	0	0	0	0	0	0	1	3035	146	6	5		5	CD34	1	208061239	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1411634	208061239	41189382	153	3515										
PLXNA2	0	genome.wustl.edu	37	chr1	208202230	208202230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcatagagcagcttgttggAgggggagtccttgcccagcc	16	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	208202230	208202230	A	G	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.5383	p.S1795P	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	107	1	0.92	171	51	22.97	-	-	-	G	208202230	A	G	208202230	3	3	67	1	0	0	0	0	1	0	0	0	12194	304	11	5	313	5	PLXNA2	1	208202230	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	140991	208202230	41048391	154	3516										
PLXNA2	0	genome.wustl.edu	37	chr1	208270155	208270155	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcccggacacctgcccctccAcctctgtcaggttcccaaag	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	208270155	208270155	A	C	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.1805	p.V602G	0.998	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	92	0	0	101	17	14.29	-	-	-	C	208270155	A	C	208270155	3	2	67	1	0	0	0	0	1	0	0	0	12194	159	6	5	3983	5	PLXNA2	1	208270155	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	67925	208270155	40980466	155	3517										
SMYD2	0	genome.wustl.edu	37	chr1	214507378	214507378	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgcaatgattcggcagggTggcagcatccacgctctcca	11	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	214507378	214507378	T	G	SNP	SMYD2	ENST00000491455	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMYD2	HGNC	ENSG00000143499	72	0	0	105	25	18.94	-	-	-	G	214507378	T	G	214507378	1	3	67	0	1	0	0	0	0	0	0	0	14911	1711	59	5		5	SMYD2	1	214507378	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6237223	214507378	34743243	156	3518										
DUSP10	0	genome.wustl.edu	37	chr1	221879733	221879733	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgcggatgcgccgccccccAcctcccggcactcttggagc	11	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	221879733	221879733	A	C	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.887	p.V296G	0.998	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	67	0	0	88	20	18.18	-	-	-	C	221879733	A	C	221879733	3	2	67	1	0	0	0	0	1	0	0	0	4845	159	6	5	569	5	DUSP10	1	221879733	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7372355	221879733	27370888	157	3519										
DUSP10	0	genome.wustl.edu	37	chr1	221912962	221912962	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtggcgatgacaggagggTggctgttactgcctgggttg	19	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	221912962	221912962	T	G	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.125	p.H42P	0.934	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	123	1	0.8	96	24	19.83	-	-	-	G	221912962	T	G	221912962	3	3	67	1	0	0	0	0	1	0	0	0	4845	1696	59	5	1335	5	DUSP10	1	221912962	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	33229	221912962	27337659	158	3520										
MIA3	0	genome.wustl.edu	37	chr1	222837366	222837366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggctccaaaagggcccccTcctttcccaggagtccctct	8	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	222837366	222837366	T	C	SNP	MIA3	ENST00000450260	human	ensembl	69_37n	1	known	missense	c.142	p.S48P	0.655	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MIA3	HGNC	ENSG00000154305	78	0	0	185	29	13.55	-	-	-	C	222837366	T	C	222837366	3	2	67	1	0	0	0	0	1	0	0	0	9636	1538	54	5	5395	5	MIA3	1	222837366	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	924404	222837366	26413255	159	3521										
SUSD4	0	genome.wustl.edu	37	chr1	223396674	223396674	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggttgtccgaagcagggTgggtgctctcttggcacctg	16	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	223396674	223396674	T	G	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.1361	p.H454P	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	106	0	0	96	28	22.58	-	-	-	G	223396674	T	G	223396674	3	3	67	1	0	0	0	0	1	0	0	0	15501	1696	59	5	119	5	SUSD4	1	223396674	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	559308	223396674	25853947	160	3522										
CAPN2	0	genome.wustl.edu	37	chr1	223943262	223943262	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggatggggagagcggctgcAccttcctggtggggctcatt	17	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	223943262	223943262	A	C	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.1216	p.T406P	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	203	1	0.49	260	36	12.04	-	-	-	C	223943262	A	C	223943262	3	2	67	1	0	0	0	0	1	0	0	0	2652	159	6	5	1261	5	CAPN2	1	223943262	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	546588	223943262	25307359	161	3523										
TMEM63A	0	genome.wustl.edu	37	chr1	226044690	226044690	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaggaccagagcaggagggTggggaagaactggctgatga	19	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	226044690	226044690	T	G	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1405	p.T469P	0.999	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	202	1	0.48	158	34	17.35	-	-	-	G	226044690	T	G	226044690	3	3	67	1	0	0	0	0	1	0	0	0	16285	1696	59	5	1054	5	TMEM63A	1	226044690	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2101428	226044690	23205931	162	3524										
TMEM63A	0	genome.wustl.edu	37	chr1	226053537	226053537	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taaggtgctcgccctgcgggTggggctgtgttggtcctacg	17	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	226053537	226053537	T	G	SNP	TMEM63A	ENST00000474478	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.803	-	-	-	no_errors	TMEM63A	HGNC	ENSG00000196187	43	0	0	59	17	21.52	-	-	-	G	226053537	T	G	226053537	1	3	67	0	1	0	0	0	0	0	0	0	16285	1711	59	5		5	TMEM63A	1	226053537	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8847	226053537	23197084	163	3525										
OBSCN	0	genome.wustl.edu	37	chr1	228432150	228432150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgagctccagctcaaaagTgggcatggaggtcaaagggt	15	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	228432150	228432150	T	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.3359	p.V1120G	0.221	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	190	1	0.52	271	35	11.36	-	-	-	G	228432150	T	G	228432150	3	3	67	1	0	0	0	0	1	0	0	0	10885	1696	59	5	3397	5	OBSCN	1	228432150	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2378613	228432150	20818471	164	3526										
PGBD5	0	genome.wustl.edu	37	chr1	230486837	230486837	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgatcaggggttcatgtagcAcctgccaggagggaaaaagc	14	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	230486837	230486837	A	C	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.851	p.V284G	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	99	0	0	162	26	13.76	-	-	-	C	230486837	A	C	230486837	3	2	67	1	0	0	0	0	1	0	0	0	11858	173	6	5	833	5	PGBD5	1	230486837	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2054687	230486837	18763784	165	3527										
TARBP1	0	genome.wustl.edu	37	chr1	234565989	234565989	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctggtctatggcctcacacAccatggccaaggcagccatg	10	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	234565989	234565989	A	C	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.2453	p.V818G	0.031	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	110	0	0	99	23	18.85	-	-	-	C	234565989	A	C	234565989	3	2	67	1	0	0	0	0	1	0	0	0	15647	159	6	5	2476	5	TARBP1	1	234565989	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4079152	234565989	14684632	166	3528										
MTR	0	genome.wustl.edu	37	chr1	237054515	237054515	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagaaactccgggcccggggTgtggttgggttctggccagc	17	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	237054515	237054515	T	G	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	silent	c.3090	p.G1030	0.144	superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	127	1	0.77	209	26	11.02	-	-	-	G	237054515	T	G	237054515	2	3	67	1	0	0	0	0	0	0	0	1	10030	1683	59	5		5	MTR	1	237054515	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2488526	237054515	12196106	167	3529										
ZNF496	0	genome.wustl.edu	37	chr1	247463774	247463774	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgctgatcagtaccaaggTgagggggcagcaccagccag	16	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	247463774	247463774	T	G	SNP	ZNF496	ENST00000461277	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF496	HGNC	ENSG00000162714	33	0	0	31	8	20	-	-	-	G	247463774	T	G	247463774	1	3	67	0	1	0	0	0	0	0	0	0	18041	1711	59	5		5	ZNF496	1	247463774	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10409259	247463774	1786847	168	3530										
OR2W3	0	genome.wustl.edu	37	chr1	248059346	248059346	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtgacctggggctgtggggTggccaactccttggccatgt	16	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	1	248059346	248059346	T	G	SNP	OR2W3	ENST00000360358	human	ensembl	69_37n	1	known	missense	c.458	p.V153G	0.095	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243	108	0	0	97	20	17.09	-	-	-	G	248059346	T	G	248059346	3	3	67	1	0	0	0	0	1	0	0	0	11106	1696	59	5	460	5	OR2W3	1	248059346	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	595572	248059346	1191275	169	3531										
KCNF1	0	genome.wustl.edu	37	chr2	11053760	11053760	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccatcgccctgcccatccAccccatcatcaacaactttg	4	20	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	11053760	11053760	A	C	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	missense	c.1208	p.H403P	1.000	pfam_Ion_trans_2,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	100	0	0	113	22	16.3	-	-	-	C	11053760	A	C	11053760	3	2	67	1	0	0	0	0	1	0	0	0	8080	159	6	5	1210	5	KCNF1	2	11053760	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		11053760	232145613	170	3532										
TRIB2	0	genome.wustl.edu	37	chr2	12863609	12863609	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gattgcctcggcagtggcccActgccatgacggggggctgg	17	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	12863609	12863609	A	C	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	missense	c.494	p.H165P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	59	0	0	28	10	26.32	-	-	-	C	12863609	A	C	12863609	3	2	67	1	0	0	0	0	1	0	0	0	16579	159	6	5	500	5	TRIB2	2	12863609	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1809849	12863609	230335764	171	3533										
APOB	0	genome.wustl.edu	37	chr2	21227221	21227221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacggtgcctacggctggggAggctgctgaggtggagatgc	19	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	21227221	21227221	A	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.12007	p.S4003P	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	146	1	0.67	229	70	23.41	-	-	-	G	21227221	A	G	21227221	3	3	67	1	0	0	0	0	1	0	0	0	787	304	11	5	1692	5	APOB	2	21227221	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8363612	21227221	221972152	172	3534										
TP53I3	0	genome.wustl.edu	37	chr2	24302509	24302509	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaataagattaactccagcAccttccataggaaacagatt	6	9	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	24302509	24302509	A	C	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	silent	c.621	p.G207	0.999	pfam_ADH_C,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	110	0	0	120	22	15.38	-	-	-	C	24302509	A	C	24302509	2	2	67	1	0	0	0	0	0	0	0	1	16483	173	6	5		5	TP53I3	2	24302509	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3075288	24302509	218896864	173	3535										
NCOA1	0	genome.wustl.edu	37	chr2	24952561	24952561	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgatgcctgttcaagtaacAcctccccgaggtgctttttc	8	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	24952561	24952561	A	C	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	silent	c.3078	p.T1026	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	161	1	0.61	147	29	16.48	-	-	-	C	24952561	A	C	24952561	2	2	67	1	0	0	0	0	0	0	0	1	10300	146	6	5		5	NCOA1	2	24952561	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	650052	24952561	218246812	174	3536										
NCOA1	0	genome.wustl.edu	37	chr2	24952582	24952582	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctccccgaggtgctttttcAcctggcatgggcatgcagcc	11	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	24952582	24952582	A	C	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	silent	c.3099	p.S1033	0.582	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	141	0	0	110	18	13.95	-	-	-	C	24952582	A	C	24952582	2	2	67	1	0	0	0	0	0	0	0	1	10300	146	6	5		5	NCOA1	2	24952582	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	21	24952582	218246791	175	3537										
DNMT3A	0	genome.wustl.edu	37	chr2	25470534	25470534	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcggctccggcccgtcatccAccaagacacaatgcggcctg	10	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	25470534	25470534	A	C	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.940	p.W314G	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	140	0	0	152	21	12.14	-	-	-	C	25470534	A	C	25470534	3	2	67	1	0	0	0	0	1	0	0	0	4711	159	6	5	1862	5	DNMT3A	2	25470534	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	517952	25470534	217728839	176	3538										
DNMT3A	0	genome.wustl.edu	37	chr2	25523042	25523042	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcttcctcccaggccgccccAccttccgtgccgtggtgctg	11	19	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	25523042	25523042	A	C	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.143	p.V48G	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	77	0	0	55	11	16.42	-	-	-	C	25523042	A	C	25523042	3	2	67	1	0	0	0	0	1	0	0	0	4711	159	6	5	2812	5	DNMT3A	2	25523042	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	52508	25523042	217676331	177	3539										
KIF3C	0	genome.wustl.edu	37	chr2	26203724	26203724	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcggttggcaaagcgcaaggTggagaggctctcatcgtagc	15	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	26203724	26203724	T	G	SNP	KIF3C	ENST00000264712	human	ensembl	69_37n	-1	known	missense	c.1063	p.T355P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731	160	1	0.61	107	26	19.55	-	-	-	G	26203724	T	G	26203724	3	3	67	1	0	0	0	0	1	0	0	0	8354	1696	59	5	1350	5	KIF3C	2	26203724	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	680682	26203724	216995649	178	3540										
ABHD1	0	genome.wustl.edu	37	chr2	27351322	27351322	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attacagaggcctcggctggTggctgggccgcagtttctgg	16	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27351322	27351322	T	G	SNP	ABHD1	ENST00000316470	human	ensembl	69_37n	1	known	missense	c.128	p.V43G	1.000	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD1	HGNC	ENSG00000143994	206	1	0.48	162	24	12.83	-	-	-	G	27351322	T	G	27351322	3	3	67	1	0	0	0	0	1	0	0	0	73	1696	59	5	134	5	ABHD1	2	27351322	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1147598	27351322	215848051	179	3541										
PREB	0	genome.wustl.edu	37	chr2	27356091	27356091	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggagctaaagtctgtctgcAccgcctgcaaattctctacc	8	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27356091	27356091	A	C	SNP	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	missense	c.440	p.V147G	1.000	smart_WD40_repeat	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	282	0	0	212	47	18.15	-	-	-	C	27356091	A	C	27356091	3	2	67	1	0	0	0	0	1	0	0	0	12551	159	6	5	841	5	PREB	2	27356091	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4769	27356091	215843282	180	3542										
CAD	0	genome.wustl.edu	37	chr2	27459320	27459320	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgtcaccaagggctaccgcAcccgacgcttggccgctgac	11	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27459320	27459320	A	C	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.4243	p.T1415P	1.000	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	83	0	0	45	13	22.03	-	-	-	C	27459320	A	C	27459320	3	2	67	1	0	0	0	0	1	0	0	0	2590	159	6	5	4345	5	CAD	2	27459320	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	103229	27459320	215740053	181	3543										
SLC30A3	0	genome.wustl.edu	37	chr2	27481074	27481074	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgcgggtggctggacgggTggagagccagagggagaaga	23	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27481074	27481074	T	G	SNP	SLC30A3	ENST00000233535	human	ensembl	69_37n	-1	known	missense	c.379	p.T127P	0.605	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194	120	1	0.82	44	14	24.14	-	-	-	G	27481074	T	G	27481074	3	3	67	1	0	0	0	0	1	0	0	0	14645	1696	59	5	811	5	SLC30A3	2	27481074	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21754	27481074	215718299	182	3544										
FNDC4	0	genome.wustl.edu	37	chr2	27716326	27716326	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtggccgctctccatccagAccttccactgtgatgtcacc	8	16	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27716326	27716326	A	C	SNP	FNDC4	ENST00000264703	human	ensembl	69_37n	-1	known	silent	c.474	p.G158	0.994	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226	130	1	0.76	126	28	18.06	-	-	-	C	27716326	A	C	27716326	2	2	67	1	0	0	0	0	0	0	0	1	6017	262	10	5		5	FNDC4	2	27716326	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	235252	27716326	215483047	183	3545										
GCKR	0	genome.wustl.edu	37	chr2	27745382	27745382	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagcctcctccgagcgatccActttccccagccactgtcag	8	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	27745382	27745382	A	C	SNP	GCKR	ENST00000264717	human	ensembl	69_37n	1	known	missense	c.1628	p.H543P	0.980	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734	86	0	0	70	14	16.47	-	-	-	C	27745382	A	C	27745382	3	2	67	1	0	0	0	0	1	0	0	0	6344	159	6	5	1698	5	GCKR	2	27745382	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	29056	27745382	215453991	184	3546										
FAM98A	0	genome.wustl.edu	37	chr2	33810293	33810293	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcttcctccccctcggccAccatggtcatagccaccacg	6	21	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	33810293	33810293	A	C	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	silent	c.1107	p.G369	0.904	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	235	1	0.42	313	47	13.06	-	-	-	C	33810293	A	C	33810293	2	2	67	1	0	0	0	0	0	0	0	1	5702	146	6	5		5	FAM98A	2	33810293	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6064911	33810293	209389080	185	3547										
VIT	0	genome.wustl.edu	37	chr2	36994344	36994344	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tagctgtggccacccccaccAccttgccaaggccatcccct	7	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	36994344	36994344	A	C	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	missense	c.595	p.T199P	0.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	134	1	0.74	92	21	18.58	-	-	-	C	36994344	A	C	36994344	3	2	67	1	0	0	0	0	1	0	0	0	17268	159	6	5	742	5	VIT	2	36994344	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3184051	36994344	206205029	186	3548										
C2orf56	0	genome.wustl.edu	37	chr2	37464936	37464936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcattagtgaatggatggccActggaaaaagcacagctttc	10	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	37464936	37464936	A	C	SNP	C2orf56	ENST00000002125	human	ensembl	69_37n	1	known	missense	c.334	p.T112P	0.029	pfam_MidA	pfam_MidA	-	no_errors	C2orf56	HGNC	ENSG00000003509	193	1	0.52	106	19	15.08	-	-	-	C	37464936	A	C	37464936	3	2	67	1	0	0	0	0	1	0	0	0	2197	159	6	5	348	5	C2orf56	2	37464936	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	470592	37464936	205734437	187	3549										
PRKCE	0	genome.wustl.edu	37	chr2	46211691	46211691	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatcttgccatccctgcaggTgggctcccagcggttcagcg	12	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	46211691	46211691	T	G	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	missense	c.695	p.V232G	1.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	122	1	0.81	73	18	19.57	-	-	-	G	46211691	T	G	46211691	3	3	67	1	0	0	0	0	1	0	0	0	12592	1710	59	5	717	5	PRKCE	2	46211691	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8746755	46211691	196987682	188	3550										
PRKCE	0	genome.wustl.edu	37	chr2	46386873	46386873	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagcagaagaagatcaagccAcccttcaaaccacgcattgt	8	12	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	46386873	46386873	A	C	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	silent	c.2049	p.P683	0.028	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	259	1	0.38	157	22	12.15	-	-	-	C	46386873	A	C	46386873	2	2	67	1	0	0	0	0	0	0	0	1	12592	146	6	5		5	PRKCE	2	46386873	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	175182	46386873	196812500	189	3551										
FSHR	0	genome.wustl.edu	37	chr2	49195883	49195883	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcaatggctgggataggTgaggctggcttccatgaggg	17	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	49195883	49195883	T	G	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.808	p.T270P	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	139	1	0.71	151	29	16.02	-	-	-	G	49195883	T	G	49195883	3	3	67	1	0	0	0	0	1	0	0	0	6122	1696	59	5	1287	5	FSHR	2	49195883	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2809010	49195883	194003490	190	3552										
GPR75	0	genome.wustl.edu	37	chr2	54081454	54081454	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gattaggctgtttccccaacAccatccggagccggtgcagg	12	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	54081454	54081454	A	C	SNP	GPR75	ENST00000394705	human	ensembl	69_37n	-1	known	missense	c.440	p.V147G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR75	HGNC	ENSG00000119737	142	1	0.69	75	17	18.48	-	-	-	C	54081454	A	C	54081454	3	2	67	1	0	0	0	0	1	0	0	0	6758	159	6	5	1186	5	GPR75	2	54081454	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4885571	54081454	189117919	191	3553										
BCL11A	0	genome.wustl.edu	37	chr2	60687509	60687509	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgaaaaagggggtgtcaggTgggagtgagggaggggtatt	22	1	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	60687509	60687509	T	G	SNP	BCL11A	ENST00000477659	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.969	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866	77	0	0	35	9	20.45	-	-	-	G	60687509	T	G	60687509	1	3	67	0	1	0	0	0	0	0	0	0	1367	1711	59	5		5	BCL11A	2	60687509	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6606055	60687509	182511864	192	3554										
BCL11A	0	genome.wustl.edu	37	chr2	60689267	60689267	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctaaacagggggggagtgggTggaaagcgcccttctgccag	17	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	60689267	60689267	T	G	SNP	BCL11A	ENST00000335712	human	ensembl	69_37n	-1	known	silent	c.780	p.P260	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866	77	0	0	49	18	26.87	-	-	-	G	60689267	T	G	60689267	2	3	67	1	0	0	0	0	0	0	0	1	1367	1683	59	5		5	BCL11A	2	60689267	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1758	60689267	182510106	193	3555										
ARHGAP25	0	genome.wustl.edu	37	chr2	69043315	69043315	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aacaggaatgactgccaaagTgttgtttctgcacagataca	9	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	69043315	69043315	T	G	SNP	ARHGAP25	ENST00000463483	human	ensembl	69_37n	1	known	missense	c.759	p.S253R	0.001	smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	45	0	0	38	11	22.45	-	-	-	G	69043315	T	G	69043315	3	3	67	1	0	0	0	0	1	0	0	0	876	1711	59	5		5	ARHGAP25	2	69043315	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8354048	69043315	174156058	194	3556										
AAK1	0	genome.wustl.edu	37	chr2	69723196	69723196	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagagtccacagtctgcccAcccttccttttttcagctgg	7	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	69723196	69723196	A	C	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.2286	p.G762	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	219	2	0.9	130	17	11.56	-	-	-	C	69723196	A	C	69723196	2	2	67	1	0	0	0	0	0	0	0	1	16	146	6	5		5	AAK1	2	69723196	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	679881	69723196	173476177	195	3557										
AAK1	0	genome.wustl.edu	37	chr2	69747979	69747979	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tacaaacctgcagcctgaggTgggggctgaacagtggccct	14	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	69747979	69747979	T	G	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.1197	p.P399	0.993	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	265	2	0.74	185	30	13.89	-	-	-	G	69747979	T	G	69747979	2	3	67	1	0	0	0	0	0	0	0	1	16	1683	59	5		5	AAK1	2	69747979	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24783	69747979	173451394	196	3558										
DYSF	0	genome.wustl.edu	37	chr2	71708016	71708016	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttttgtgtctcttgtaggggTgaagaagagaaccaaagtca	12	5	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	71708016	71708016	T	G	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.92	p.V31G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	352	1	0.28	220	25	10.16	-	-	-	G	71708016	T	G	71708016	3	3	67	1	0	0	0	0	1	0	0	0	4894	1696	59	5	193	5	DYSF	2	71708016	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1960037	71708016	171491357	197	3559										
DYSF	0	genome.wustl.edu	37	chr2	71909736	71909736	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctgtggcggcgtttccggTgggccatcatcctcttcatc	11	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	71909736	71909736	T	G	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.6226	p.W2076G	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	178	1	0.55	230	30	11.54	-	-	-	G	71909736	T	G	71909736	3	3	67	1	0	0	0	0	1	0	0	0	4894	1696	59	5	6606	5	DYSF	2	71909736	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	201720	71909736	171289637	198	3560										
EXOC6B	0	genome.wustl.edu	37	chr2	72742194	72742194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgttagatggaggttgaagtAccaaacgagcctgttttcgc	12	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	72742194	72742194	A	C	SNP	EXOC6B	ENST00000272427	human	ensembl	69_37n	-1	known	missense	c.977	p.V326G	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036	177	0	0	158	23	12.71	-	-	-	C	72742194	A	C	72742194	3	2	67	1	0	0	0	0	1	0	0	0	5345	391	14	5	1514	5	EXOC6B	2	72742194	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	832458	72742194	170457179	199	3561										
C2orf65	0	genome.wustl.edu	37	chr2	74785657	74785657	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagaaaggacaggctcgggTgtgtcgcttccagacttgag	16	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	74785657	74785657	T	G	SNP	C2orf65	ENST00000464686	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C2orf65	HGNC	ENSG00000159374	26	0	0	11	11	50	-	-	-	G	74785657	T	G	74785657	1	3	67	0	1	0	0	0	0	0	0	0	2204	1711	59	5		5	C2orf65	2	74785657	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2043463	74785657	168413716	200	3562										
HK2	0	genome.wustl.edu	37	chr2	75107666	75107666	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccccgtcaagatgctgcccAcctacgtgtgtgctaccccg	9	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	75107666	75107666	A	C	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	missense	c.1540	p.T514P	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	126	0	0	73	19	20.43	-	-	-	C	75107666	A	C	75107666	3	2	67	1	0	0	0	0	1	0	0	0	7242	159	6	5	1578	5	HK2	2	75107666	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	322009	75107666	168091707	201	3563										
TCF7L1	0	genome.wustl.edu	37	chr2	85533444	85533444	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaaggtggtggctgagtgcAccctgaaggaaagtgcagcc	15	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	85533444	85533444	A	C	SNP	TCF7L1	ENST00000282111	human	ensembl	69_37n	1	known	missense	c.1105	p.T369P	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L1	HGNC	ENSG00000152284	214	2	0.92	107	18	14.29	-	-	-	C	85533444	A	C	85533444	3	2	67	1	0	0	0	0	1	0	0	0	15792	159	6	5	1139	5	TCF7L1	2	85533444	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10425778	85533444	157665929	202	3564										
CAPG	0	genome.wustl.edu	37	chr2	85622707	85622707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgagatgaagccctcggccAcctgcagggctgcctgccgc	14	16	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	85622707	85622707	A	C	SNP	CAPG	ENST00000263867	human	ensembl	69_37n	-1	known	missense	c.935	p.V312G	0.998	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	CAPG	HGNC	ENSG00000042493	114	0	0	47	17	26.56	-	-	-	C	85622707	A	C	85622707	3	2	67	1	0	0	0	0	1	0	0	0	2646	159	6	5	119	5	CAPG	2	85622707	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	89263	85622707	157576666	203	3565										
GGCX	0	genome.wustl.edu	37	chr2	85781381	85781381	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagaggtcaagcagcagcccAccccagtgcacgaccagcag	12	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	85781381	85781381	A	C	SNP	GGCX	ENST00000233838	human	ensembl	69_37n	-1	known	silent	c.774	p.G258	0.732	pfam_VKG_COase,smart_HTTM	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	157	1	0.63	131	21	13.82	-	-	-	C	85781381	A	C	85781381	2	2	67	1	0	0	0	0	0	0	0	1	6408	146	6	5		5	GGCX	2	85781381	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	158674	85781381	157417992	204	3566										
POLR1A	0	genome.wustl.edu	37	chr2	86327177	86327177	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgaagtcctgcacgcaggTggagcacacctctttggaat	12	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	86327177	86327177	T	G	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.196	p.T66P	1.000	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	174	0	0	109	25	18.66	-	-	-	G	86327177	T	G	86327177	3	3	67	1	0	0	0	0	1	0	0	0	12283	1696	59	5	5098	5	POLR1A	2	86327177	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	545796	86327177	156872196	205	3567										
RNF103	0	genome.wustl.edu	37	chr2	86831014	86831014	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgttgtgcatatggctgCttttttttataagaaggcca	11	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	86831014	86831014	C	G	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	missense	c.2010	p.K670N	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	92	0	0	98	12	10.91	-	-	-	G	86831014	C	G	86831014	3	3	67	1	0	0	0	0	1	0	0	0	13509	796	28	4	51	4	RNF103	2	86831014	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	503837	86831014	156368359	206	3568										
SNRNP200	0	genome.wustl.edu	37	chr2	96949301	96949301	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttggatgtctgctgcacaggTggtgaggatgtcaatggcag	16	6	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	96949301	96949301	T	G	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.4735	p.T1579P	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	129	0	0	114	23	16.31	-	-	-	G	96949301	T	G	96949301	3	3	67	1	0	0	0	0	1	0	0	0	14941	1696	59	5	1727	5	SNRNP200	2	96949301	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10118287	96949301	146250072	207	3569										
SNRNP200	0	genome.wustl.edu	37	chr2	96952794	96952794	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcagctccaccttcagggTggagcgtgtgataggctgca	15	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	96952794	96952794	T	G	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.3589	p.T1197P	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	174	0	0	110	23	17.29	-	-	-	G	96952794	T	G	96952794	3	3	67	1	0	0	0	0	1	0	0	0	14941	1696	59	5	2897	5	SNRNP200	2	96952794	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3493	96952794	146246579	208	3570										
SNRNP200	0	genome.wustl.edu	37	chr2	96963381	96963381	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccctggatcctacctctccAccctggtcgagatccatggt	9	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	96963381	96963381	A	C	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.1197	p.G399	0.956	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	135	0	0	109	22	16.3	-	-	-	C	96963381	A	C	96963381	2	2	67	1	0	0	0	0	0	0	0	1	14941	146	6	5		5	SNRNP200	2	96963381	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10587	96963381	146235992	209	3571										
CNNM4	0	genome.wustl.edu	37	chr2	97465296	97465296	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgttttttcaggggaaggTggaggtggaggcagggaagg	21	2	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	97465296	97465296	T	G	SNP	CNNM4	ENST00000377075	human	ensembl	69_37n	1	known	missense	c.1859	p.V620G	1.000	superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_DUF21,pfam_Cysta_beta_synth_core,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158	229	1	0.43	224	26	10.36	-	-	-	G	97465296	T	G	97465296	3	3	67	1	0	0	0	0	1	0	0	0	3645	1696	59	5	1877	5	CNNM4	2	97465296	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	501915	97465296	145734077	210	3572										
FAHD2B	0	genome.wustl.edu	37	chr2	97751484	97751484	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggcccagagggcagaaggTgtcgaaggtttttcccagca	15	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	97751484	97751484	T	G	SNP	FAHD2B	ENST00000272610	human	ensembl	69_37n	-1	known	missense	c.637	p.T213P	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199	159	1	0.62	165	29	14.87	-	-	-	G	97751484	T	G	97751484	3	3	67	1	0	0	0	0	1	0	0	0	5414	1696	59	5	323	5	FAHD2B	2	97751484	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	286188	97751484	145447889	211	3573										
SEPT10	0	genome.wustl.edu	37	chr2	110303611	110303611	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagggctgccagggagggTggctgggcctcttacttctt	17	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	110303611	110303611	T	G	SNP	SEPT10	ENST00000468616	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEPT10	HGNC	ENSG00000186522	296	2	0.67	206	38	15.45	-	-	-	G	110303611	T	G	110303611	1	3	67	0	1	0	0	0	0	0	0	0	14148	1711	59	5		5	SEPT10	2	110303611	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12552127	110303611	132895762	212	3574										
BCL2L11	0	genome.wustl.edu	37	chr2	111881520	111881520	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcagggcccgctggccccAcctgccagccctggcccttt	10	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	111881520	111881520	A	C	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	silent	c.198	p.P66	0.955	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	102	1	0.95	65	23	26.14	-	-	-	C	111881520	A	C	111881520	2	2	67	1	0	0	0	0	0	0	0	1	1373	146	6	5		5	BCL2L11	2	111881520	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1577909	111881520	131317853	213	3575										
RALB	0	genome.wustl.edu	37	chr2	121047245	121047245	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctagaggagcggaggcaggTgcctgtggaggaggccagga	20	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	121047245	121047245	T	G	SNP	RALB	ENST00000474855	human	ensembl	69_37n	1	known	missense	c.479	p.V160G	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118	213	1	0.46	83	19	18.63	-	-	-	G	121047245	T	G	121047245	3	3	67	1	0	0	0	0	1	0	0	0	13094	1696	59	5	423	5	RALB	2	121047245	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9165725	121047245	122152128	214	3576										
GLI2	0	genome.wustl.edu	37	chr2	121728087	121728087	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctgatccagccctcacccAccttcctggcccagcagccc	6	23	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	121728087	121728087	A	C	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.964	p.T322P	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	120	1	0.82	130	25	16.13	-	-	-	C	121728087	A	C	121728087	3	2	67	1	0	0	0	0	1	0	0	0	6490	159	6	5	986	5	GLI2	2	121728087	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	680842	121728087	121471286	215	3577										
SAP130	0	genome.wustl.edu	37	chr2	128757654	128757654	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggtcgctgaaggaatggTgttggttgccaaaataggtg	16	4	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	128757654	128757654	T	G	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	missense	c.1162	p.T388P	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	348	1	0.29	253	32	11.23	-	-	-	G	128757654	T	G	128757654	3	3	67	1	0	0	0	0	1	0	0	0	13917	1696	59	5	2141	5	SAP130	2	128757654	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7029567	128757654	114441719	216	3578										
SAP130	0	genome.wustl.edu	37	chr2	128774074	128774074	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagtgacagggtagaaggTggagcaggagcaatgggacg	20	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	128774074	128774074	T	G	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	silent	c.474	p.P158	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	199	0	0	140	21	12.96	-	-	-	G	128774074	T	G	128774074	2	3	67	1	0	0	0	0	0	0	0	1	13917	1683	59	5		5	SAP130	2	128774074	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	16420	128774074	114425299	217	3579										
NEB	0	genome.wustl.edu	37	chr2	152435922	152435922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgggaaagcaagaccagcggTgcaggtaatggcgatagtcc	15	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	152435922	152435922	T	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.16634	p.H5545P	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	348	2	0.57	332	52	13.4	-	-	-	G	152435922	T	G	152435922	3	3	67	1	0	0	0	0	1	0	0	0	10374	1696	59	5	9364	5	NEB	2	152435922	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	23661848	152435922	90763451	218	3580										
TANC1	0	genome.wustl.edu	37	chr2	160076339	160076339	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagacaagaatggccgcacAcccttggacctggctgcctt	10	14	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	160076339	160076339	A	C	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.3639	p.T1213	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	138	1	0.71	80	18	18.18	-	-	-	C	160076339	A	C	160076339	2	2	67	1	0	0	0	0	0	0	0	1	15636	146	6	5		5	TANC1	2	160076339	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7640417	160076339	83123034	219	3581										
FIGN	0	genome.wustl.edu	37	chr2	164466228	164466228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtggctggcatggcatggAgggggcccaccactgcttcc	15	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	164466228	164466228	A	G	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.2114	p.L705P	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	80	0	0	73	21	22.34	-	-	-	G	164466228	A	G	164466228	3	3	67	1	0	0	0	0	1	0	0	0	5937	304	11	5	169	5	FIGN	2	164466228	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4389889	164466228	78733145	220	3582										
GRB14	0	genome.wustl.edu	37	chr2	165353754	165353754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagctctgtgaagaggcagTggggctaccgtgagtgccca	16	9	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	165353754	165353754	T	G	SNP	GRB14	ENST00000263915	human	ensembl	69_37n	-1	known	missense	c.1261	p.T421P	1.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	231	0	0	162	20	10.99	-	-	-	G	165353754	T	G	165353754	3	3	67	1	0	0	0	0	1	0	0	0	6808	1696	59	5	377	5	GRB14	2	165353754	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	887526	165353754	77845619	221	3583										
LRP2	0	genome.wustl.edu	37	chr2	170062882	170062882	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggatccctgaagacagggTggcataggaaatctgtccaa	12	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	170062882	170062882	T	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7348	p.T2450P	0.971	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	128	0	0	112	26	18.84	-	-	-	G	170062882	T	G	170062882	3	3	67	1	0	0	0	0	1	0	0	0	9022	1696	59	5	6783	5	LRP2	2	170062882	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4709128	170062882	73136491	222	3584										
KBTBD10	0	genome.wustl.edu	37	chr2	170367116	170367116	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccgcgaagactggggctggTgaggtgaatggtgatgttgg	20	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	170367116	170367116	T	G	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	silent	c.828	p.G276	0.736	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	306	1	0.33	242	37	13.21	-	-	-	G	170367116	T	G	170367116	2	3	67	1	0	0	0	0	0	0	0	1	8044	1683	59	5		5	KBTBD10	2	170367116	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	304234	170367116	72832257	223	3585										
KLHL23	0	genome.wustl.edu	37	chr2	170592338	170592338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagagatttcccagaggtccAcagccacaatgtatataatt	7	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	170592338	170592338	A	C	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	1	known	missense	c.814	p.T272P	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	84	0	0	56	13	18.84	-	-	-	C	170592338	A	C	170592338	3	2	67	1	0	0	0	0	1	0	0	0	8431	159	6	5	816	5	KLHL23	2	170592338	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	225222	170592338	72607035	224	3586										
DLX1	0	genome.wustl.edu	37	chr2	172950625	172950625	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggctacccctacgtcaacTcggtcagcagccacgcatcc	9	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	172950625	172950625	T	C	SNP	DLX1	ENST00000361725	human	ensembl	69_37n	1	known	missense	c.220	p.S74P	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX1	HGNC	ENSG00000144355	76	0	0	45	6	11.76	-	-	-	C	172950625	T	C	172950625	3	2	67	1	0	0	0	0	1	0	0	0	4606	1551	54	5	222	5	DLX1	2	172950625	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2358287	172950625	70248748	225	3587										
CHRNA1	0	genome.wustl.edu	37	chr2	175618248	175618248	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacctgagtctgtgggcaggTagaataccaggccagttaag	13	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	175618248	175618248	T	G	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	missense	c.836	p.Y279S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	221	2	0.88	222	29	11.42	-	-	-	G	175618248	T	G	175618248	3	3	67	1	0	0	0	0	1	0	0	0	3410	1638	57	5	628	5	CHRNA1	2	175618248	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2667623	175618248	67581125	226	3588										
WDR75	0	genome.wustl.edu	37	chr2	190306223	190306223	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgctactgcgcaaagatggTggaggaggagaacatccgcg	15	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	190306223	190306223	T	G	SNP	WDR75	ENST00000314761	human	ensembl	69_37n	1	known	missense	c.5	p.V2G	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR75	HGNC	ENSG00000115368	121	0	0	97	15	13.27	-	-	-	G	190306223	T	G	190306223	3	3	67	1	0	0	0	0	1	0	0	0	17422	1696	59	5	7	5	WDR75	2	190306223	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	14687975	190306223	52893150	227	3589										
CASP8	0	genome.wustl.edu	37	chr2	202122980	202122980	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaggcagaagagccagggTggttattgaaagtaaaagaa	16	3	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	202122980	202122980	T	G	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.26	p.V9G	0.000	NULL	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	172	1	0.57	129	38	22.75	-	-	-	G	202122980	T	G	202122980	3	3	67	1	0	0	0	0	1	0	0	0	2702	1696	59	5	28	5	CASP8	2	202122980	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	11816757	202122980	41076393	228	3590										
MPP4	0	genome.wustl.edu	37	chr2	202539951	202539951	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tagggttgacttgaggcaggTgtgaggctggtacggctgag	19	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	202539951	202539951	T	G	SNP	MPP4	ENST00000359962	human	ensembl	69_37n	-1	known	missense	c.973	p.T325P	0.695	superfamily_SH3_domain	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP4	HGNC	ENSG00000082126	137	0	0	105	24	18.46	-	-	-	G	202539951	T	G	202539951	3	3	67	1	0	0	0	0	1	0	0	0	9808	1696	59	5	988	5	MPP4	2	202539951	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	416971	202539951	40659422	229	3591										
BMPR2	0	genome.wustl.edu	37	chr2	203420216	203420216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caagtgtcaccagcctctccAccaacacaacaaccacaaac	3	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	203420216	203420216	A	C	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	missense	c.1828	p.T610P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	298	1	0.33	190	26	12.04	-	-	-	C	203420216	A	C	203420216	3	2	67	1	0	0	0	0	1	0	0	0	1476	159	6	5	1874	5	BMPR2	2	203420216	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	880265	203420216	39779157	230	3592										
PARD3B	0	genome.wustl.edu	37	chr2	206050531	206050531	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggccgagagtgaagttccAccttctccaacaccacattc	8	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	206050531	206050531	A	C	SNP	PARD3B	ENST00000406610	human	ensembl	69_37n	1	known	silent	c.1968	p.P656	0.887	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	199	2	0.99	217	44	16.79	-	-	-	C	206050531	A	C	206050531	2	2	67	1	0	0	0	0	0	0	0	1	11517	146	6	5		5	PARD3B	2	206050531	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2630315	206050531	37148842	231	3593										
CPS1	0	genome.wustl.edu	37	chr2	211466997	211466997	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgttccgcctatgcactgggTgggttaggctcaggcatctg	14	11	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	211466997	211466997	T	G	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	silent	c.1797	p.G599	0.873	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	187	1	0.53	116	22	15.94	-	-	-	G	211466997	T	G	211466997	2	3	67	1	0	0	0	0	0	0	0	1	3853	1683	59	5		5	CPS1	2	211466997	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5416466	211466997	31732376	232	3594										
ARPC2	0	genome.wustl.edu	37	chr2	219114442	219114442	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcctgggtcaatcccagggTgtatgttcccaaccgccctt	11	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	219114442	219114442	T	G	SNP	ARPC2	ENST00000487321	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARPC2	HGNC	ENSG00000163466	59	0	0	41	15	26.79	-	-	-	G	219114442	T	G	219114442	1	3	67	0	1	0	0	0	0	0	0	0	975	1711	59	5		5	ARPC2	2	219114442	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7647445	219114442	24084931	233	3595										
TMBIM1	0	genome.wustl.edu	37	chr2	219141821	219141821	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtgcacgaggtgaagtccAcctgccaggaagcaagaaag	13	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	219141821	219141821	A	C	SNP	TMBIM1	ENST00000258412	human	ensembl	69_37n	-1	known	missense	c.641	p.V214G	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM1	HGNC	ENSG00000135926	112	1	0.88	51	16	23.88	-	-	-	C	219141821	A	C	219141821	3	2	67	1	0	0	0	0	1	0	0	0	16076	173	6	5	306	5	TMBIM1	2	219141821	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	27379	219141821	24057552	234	3596										
ZNF142	0	genome.wustl.edu	37	chr2	219508240	219508240	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggagggactgggtcaaggTggtgcttcttaggggcctcc	17	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	219508240	219508240	T	G	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	missense	c.2999	p.H1000P	0.203	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	301	3	0.97	261	50	15.87	-	-	-	G	219508240	T	G	219508240	3	3	67	1	0	0	0	0	1	0	0	0	17827	1696	59	5	2076	5	ZNF142	2	219508240	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	366419	219508240	23691133	235	3597										
CCDC108	0	genome.wustl.edu	37	chr2	219870847	219870847	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagagcatgcctggcgagggTggctgggggcagggccagga	21	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	219870847	219870847	T	G	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	silent	c.4818	p.P1606	0.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	85	0	0	55	16	22.54	-	-	-	G	219870847	T	G	219870847	2	3	67	1	0	0	0	0	0	0	0	1	2768	1683	59	5		5	CCDC108	2	219870847	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	362607	219870847	23328526	236	3598										
SLC23A3	0	genome.wustl.edu	37	chr2	220034363	220034363	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gactgcaaagcaggagcaggTgggagacacagagcagagaa	16	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	220034363	220034363	T	G	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.200	p.H67P	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	215	2	0.91	76	12	13.48	-	-	-	G	220034363	T	G	220034363	3	3	67	1	0	0	0	0	1	0	0	0	14553	1696	59	5	1700	5	SLC23A3	2	220034363	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	163516	220034363	23165010	237	3599										
SLC23A3	0	genome.wustl.edu	37	chr2	220034597	220034597	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagagatccacacaaagggTcccaagagtgggtggaggga	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	220034597	220034597	T	G	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.110	p.D37A	0.033	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	126	0	0	115	15	11.45	-	-	-	G	220034597	T	G	220034597	3	3	67	1	0	0	0	0	1	0	0	0	14553	1667	58	5	1794	5	SLC23A3	2	220034597	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	234	220034597	23164776	238	3600										
DNAJB2	0	genome.wustl.edu	37	chr2	220147923	220147923	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctctgtttctacatctaccAcctttgtccaaggacgccgc	7	15	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	220147923	220147923	A	C	SNP	DNAJB2	ENST00000336576	human	ensembl	69_37n	1	known	missense	c.514	p.T172P	0.997	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB2	HGNC	ENSG00000135924	114	1	0.86	115	21	15.11	-	-	-	C	220147923	A	C	220147923	3	2	67	1	0	0	0	0	1	0	0	0	4655	159	6	5	536	5	DNAJB2	2	220147923	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	113326	220147923	23051450	239	3601										
SPEG	0	genome.wustl.edu	37	chr2	220326764	220326764	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgacactggctccaaggcAccccccaccttcaaggtcag	8	17	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	220326764	220326764	A	C	SNP	SPEG	ENST00000396695	human	ensembl	69_37n	1	known	silent	c.225	p.A75	0.936	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	56	0	0	27	14	34.15	-	-	-	C	220326764	A	C	220326764	2	2	67	1	0	0	0	0	0	0	0	1	15127	146	6	5		5	SPEG	2	220326764	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	178841	220326764	22872609	240	3602										
OBSL1	0	genome.wustl.edu	37	chr2	220427360	220427360	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgcacggctgccacatacAccttgccgctgggatacacg	12	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	220427360	220427360	A	C	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.2717	p.V906G	0.989	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	45	0	0	25	10	28.57	-	-	-	C	220427360	A	C	220427360	3	2	67	1	0	0	0	0	1	0	0	0	10886	159	6	5	3181	5	OBSL1	2	220427360	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	100596	220427360	22772013	241	3603										
PAX3	0	genome.wustl.edu	37	chr2	223084885	223084885	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagaggccattgccaatggTggggttcatggggttggagg	19	5	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	223084885	223084885	T	G	SNP	PAX3	ENST00000392069	human	ensembl	69_37n	-1	known	missense	c.1147	p.T383P	0.967	pfam_Pax7	pfam_Paired_dom,pfam_Pax7,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903	262	0	0	187	37	16.37	-	-	-	G	223084885	T	G	223084885	3	3	67	1	0	0	0	0	1	0	0	0	11553	1696	59	5	414	5	PAX3	2	223084885	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2657525	223084885	20114488	242	3604										
NCL	0	genome.wustl.edu	37	chr2	232321358	232321358	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttacggcttctggcattaggTgatcccctgggtccttgcaa	11	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	232321358	232321358	T	G	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	silent	c.1689	p.S563	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	240	1	0.41	125	30	19.11	-	-	-	G	232321358	T	G	232321358	2	3	67	1	0	0	0	0	0	0	0	1	10298	1683	59	5		5	NCL	2	232321358	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9236473	232321358	10878015	243	3605										
CHRNG	0	genome.wustl.edu	37	chr2	233407679	233407679	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagcaggccaccagaaggTggtgttctacctgctcatcc	12	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	233407679	233407679	T	G	SNP	CHRNG	ENST00000389494	human	ensembl	69_37n	1	known	missense	c.692	p.V231G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811	162	1	0.6	130	33	20.25	-	-	-	G	233407679	T	G	233407679	3	3	67	1	0	0	0	0	1	0	0	0	3425	1696	59	5	718	5	CHRNG	2	233407679	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1086321	233407679	9791694	244	3606										
UGT1A8	0	genome.wustl.edu	37	chr2	234527064	234527064	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcctctgaaattctccaaacAcctgtcacagcatatgatct	5	13	4	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	234527064	234527064	A	C	SNP	UGT1A8	ENST00000373450	human	ensembl	69_37n	1	known	silent	c.711	p.T237	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366	161	0	0	171	25	12.76	-	-	-	C	234527064	A	C	234527064	2	2	67	1	0	0	0	0	0	0	0	1	17048	146	6	5		5	UGT1A8	2	234527064	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1119385	234527064	8672309	245	3607										
TRPM8	0	genome.wustl.edu	37	chr2	234863874	234863874	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tagccaatgatgagattttcAccaatgaccgccgatgggag	11	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	234863874	234863874	A	C	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.1342	p.T448P	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	89	0	0	41	18	30.51	-	-	-	C	234863874	A	C	234863874	3	2	67	1	0	0	0	0	1	0	0	0	16688	159	6	5	1380	5	TRPM8	2	234863874	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	336810	234863874	8335499	246	3608										
TRPM8	0	genome.wustl.edu	37	chr2	234875330	234875330	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tattcctgtgaagcttggggTggaagcaactgtctggagct	14	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	234875330	234875330	T	G	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	silent	c.1956	p.G652	0.264	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	203	0	0	139	21	13.04	-	-	-	G	234875330	T	G	234875330	2	3	67	1	0	0	0	0	0	0	0	1	16688	1683	59	5		5	TRPM8	2	234875330	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	11456	234875330	8324043	247	3609										
CAPN10	0	genome.wustl.edu	37	chr2	241536234	241536234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaactttgcctcataccccAccaacccctgcttccccttc	4	20	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	241536234	241536234	A	C	SNP	CAPN10	ENST00000391984	human	ensembl	69_37n	1	known	missense	c.1618	p.T540P	0.075	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN10	HGNC	ENSG00000142330	32	0	0	23	10	30.3	-	-	-	C	241536234	A	C	241536234	3	2	67	1	0	0	0	0	1	0	0	0	2648	159	6	5	1652	5	CAPN10	2	241536234	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6660904	241536234	1663139	248	3610										
HDLBP	0	genome.wustl.edu	37	chr2	242181873	242181873	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacgctccctccccatgctcAccttctcctccgccagatgc	5	22	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	2	242181873	242181873	A	C	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	splice_site	c.2169+2	e15+2	1.000	-	-	-	no_errors	HDLBP	HGNC	ENSG00000115677	73	0	0	55	8	12.31	-	-	-	C	242181873	A	C	242181873	5	2	67	1	0	0	0	0	0	0	1	0	7076	173	6	5	1683	5	HDLBP	2	242181873	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	645639	242181873	1017500	249	3611										
ATP2B2	0	genome.wustl.edu	37	chr3	10382206	10382206	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaaggtgcccagcacgatggTgcagaagatggggttccgga	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	10382206	10382206	T	G	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.3100	p.T1034P	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	113	1	0.87	77	20	20.62	-	-	-	G	10382206	T	G	10382206	3	3	67	1	0	0	0	0	1	0	0	0	1144	1696	59	5	647	5	ATP2B2	3	10382206	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		10382206	187640224	250	3612										
SLC6A1	0	genome.wustl.edu	37	chr3	11058920	11058920	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgaccaacggcagcaaggTggccgacgggcagatctcca	15	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	11058920	11058920	T	G	SNP	SLC6A1	ENST00000287766	human	ensembl	69_37n	1	known	missense	c.23	p.V8G	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	-	no_errors	SLC6A1	HGNC	ENSG00000157103	49	0	0	9	10	50	-	-	-	G	11058920	T	G	11058920	3	3	67	1	0	0	0	0	1	0	0	0	14762	1696	59	5	25	5	SLC6A1	3	11058920	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	676714	11058920	186963510	251	3613										
C3orf20	0	genome.wustl.edu	37	chr3	14746010	14746010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgctcagactctcagccccAcctctcacccatcttctgcc	5	20	5	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	14746010	14746010	A	C	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	missense	c.1045	p.T349P	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	120	1	0.82	154	19	10.92	-	-	-	C	14746010	A	C	14746010	3	2	67	1	0	0	0	0	1	0	0	0	2233	159	6	5	1063	5	C3orf20	3	14746010	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3687090	14746010	183276420	252	3614										
HACL1	0	genome.wustl.edu	37	chr3	15609479	15609479	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atagcaaatcccaaaccaacTcccattgttccgaaagtacc	4	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	15609479	15609479	T	C	SNP	HACL1	ENST00000321169	human	ensembl	69_37n	-1	known	silent	c.1281	p.G427	1.000	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_Thiamin_PyroP_enz_cen_dom,pfam_TPP_enzyme-bd_C,pfam_CO_DH_CoA_synth	-	no_errors	HACL1	HGNC	ENSG00000131373	171	0	0	181	21	10.34	-	-	-	C	15609479	T	C	15609479	2	2	67	1	0	0	0	0	0	0	0	1	6992	1538	54	5		5	HACL1	3	15609479	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	863469	15609479	182412951	253	3615										
OXNAD1	0	genome.wustl.edu	37	chr3	16336476	16336476	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagtgaaatatacgaaccAccctcctgccctctgggttc	9	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	16336476	16336476	A	C	SNP	OXNAD1	ENST00000544043	human	ensembl	69_37n	1	known	missense	c.458	p.H153P	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814	117	1	0.85	154	33	17.55	-	-	-	C	16336476	A	C	16336476	3	2	67	1	0	0	0	0	1	0	0	0	11406	159	6	5	418	5	OXNAD1	3	16336476	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	726997	16336476	181685954	254	3616										
SATB1	0	genome.wustl.edu	37	chr3	18427909	18427909	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctggggaggacggctgggTggtgtgctgatgaggggggc	23	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	18427909	18427909	T	G	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	silent	c.1401	p.P467	0.001	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	244	2	0.79	145	37	20.33	-	-	-	G	18427909	T	G	18427909	2	3	67	1	0	0	0	0	0	0	0	1	13940	1683	59	5		5	SATB1	3	18427909	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2091433	18427909	179594521	255	3617										
TRANK1	0	genome.wustl.edu	37	chr3	36873102	36873102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atagaggccacggactatggAccctttggtgtgcacagggt	14	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	36873102	36873102	A	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.7840	p.S2614A	0.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	101	0	0	64	19	22.89	-	-	-	C	36873102	A	C	36873102	3	2	67	1	0	0	0	0	1	0	0	0	16550	275	10	5	949	5	TRANK1	3	36873102	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	18445193	36873102	161149328	256	3618										
DLEC1	0	genome.wustl.edu	37	chr3	38159298	38159298	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tacctctgtggctgcccaggTgctgagtgagctggtgacca	14	11	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	38159298	38159298	T	G	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	missense	c.4487	p.V1496G	1.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	108	1	0.9	31	18	36.73	-	-	-	G	38159298	T	G	38159298	3	3	67	1	0	0	0	0	1	0	0	0	4588	1710	59	5	4617	5	DLEC1	3	38159298	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1286196	38159298	159863132	257	3619										
MYD88	0	genome.wustl.edu	37	chr3	38182262	38182262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctaggtgccgccggatggTggtggttgtctctgatgatt	15	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	38182262	38182262	T	G	SNP	MYD88	ENST00000417037	human	ensembl	69_37n	1	known	missense	c.722	p.V241G	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_TIR_dom	pfam_TIR_dom,pfam_Death,superfamily_DEATH-like,superfamily_TIR_dom,smart_Death,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936	216	1	0.46	197	22	10	-	-	-	G	38182262	T	G	38182262	3	3	67	1	0	0	0	0	1	0	0	0	10095	1696	59	5	736	5	MYD88	3	38182262	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	22964	38182262	159840168	258	3620										
SCN5A	0	genome.wustl.edu	37	chr3	38592119	38592119	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcaaagagcgttgcagcaggTgcctgcggaaggctctctgg	15	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	38592119	38592119	T	G	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5744	p.H1915P	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	230	2	0.85	171	23	11.73	-	-	-	G	38592119	T	G	38592119	3	3	67	1	0	0	0	0	1	0	0	0	14010	1696	59	5	310	5	SCN5A	3	38592119	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	409857	38592119	159430311	259	3621										
SCN5A	0	genome.wustl.edu	37	chr3	38592335	38592335	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatggatgcggtccccactcAccatgggcaggtccatgttg	12	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	38592335	38592335	A	C	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5528	p.V1843G	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	184	0	0	135	22	13.92	-	-	-	C	38592335	A	C	38592335	3	2	67	1	0	0	0	0	1	0	0	0	14010	159	6	5	526	5	SCN5A	3	38592335	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	216	38592335	159430095	260	3622										
SCN5A	0	genome.wustl.edu	37	chr3	38645502	38645502	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggtctcgcctgcgaaaggTgaaaatgctcccgcggctgg	14	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	38645502	38645502	T	G	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.1591	p.T531P	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	59	0	0	71	15	17.44	-	-	-	G	38645502	T	G	38645502	3	3	67	1	0	0	0	0	1	0	0	0	14010	1696	59	5	4527	5	SCN5A	3	38645502	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	53167	38645502	159376928	261	3623										
SNRK	0	genome.wustl.edu	37	chr3	43388883	43388883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggaccttgaggatgacctcAcggccactcctttgtcccac	9	15	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	43388883	43388883	A	C	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	1	known	missense	c.1132	p.T378P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	89	0	0	41	5	10.87	-	-	-	C	43388883	A	C	43388883	3	2	67	1	0	0	0	0	1	0	0	0	14940	159	6	5	1150	5	SNRK	3	43388883	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4743381	43388883	154633547	262	3624										
CCR3	0	genome.wustl.edu	37	chr3	46306905	46306905	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggacctgctcttcctcgtcAcccttccattctggatccac	6	18	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	46306905	46306905	A	C	SNP	CCR3	ENST00000545097	human	ensembl	69_37n	1	known	missense	c.319	p.T107P	0.874	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	-	no_errors	CCR3	HGNC	ENSG00000183625	125	0	0	89	22	19.47	-	-	-	C	46306905	A	C	46306905	3	2	67	1	0	0	0	0	1	0	0	0	2971	159	6	5	325	5	CCR3	3	46306905	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2918022	46306905	151715525	263	3625										
NBEAL2	0	genome.wustl.edu	37	chr3	47036011	47036011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcagagccatggtccccccAcccatcggctgttgcaagag	11	15	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47036011	47036011	A	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.1264	p.T422P	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	84	0	0	59	17	22.08	-	-	-	C	47036011	A	C	47036011	3	2	67	1	0	0	0	0	1	0	0	0	10261	159	6	5	1310	5	NBEAL2	3	47036011	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	729106	47036011	150986419	264	3626										
NBEAL2	0	genome.wustl.edu	37	chr3	47043228	47043228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgcctgggagcctggccccAcctggccaacggcacagctg	13	17	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47043228	47043228	A	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.4694	p.H1565P	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	77	0	0	113	25	17.86	-	-	-	C	47043228	A	C	47043228	3	2	67	1	0	0	0	0	1	0	0	0	10261	159	6	5	4812	5	NBEAL2	3	47043228	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7217	47043228	150979202	265	3627										
KIF9	0	genome.wustl.edu	37	chr3	47277947	47277947	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgcacccatgagcaggcggTggcgacactgatccactagg	13	13	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47277947	47277947	T	G	SNP	KIF9	ENST00000265529	human	ensembl	69_37n	-1	known	missense	c.2087	p.H696P	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727	120	1	0.83	70	20	21.98	-	-	-	G	47277947	T	G	47277947	3	3	67	1	0	0	0	0	1	0	0	0	8362	1696	59	5	301	5	KIF9	3	47277947	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	234719	47277947	150744483	266	3628										
KLHL18	0	genome.wustl.edu	37	chr3	47324496	47324496	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagctggaggatctggtgcActtctccgtgtctgagttgc	15	9	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47324496	47324496	A	C	SNP	KLHL18	ENST00000232766	human	ensembl	69_37n	1	known	missense	c.41	p.H14P	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648	129	1	0.76	78	12	13.33	-	-	-	C	47324496	A	C	47324496	3	2	67	1	0	0	0	0	1	0	0	0	8426	159	6	5	43	5	KLHL18	3	47324496	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	46549	47324496	150697934	267	3629										
PTPN23	0	genome.wustl.edu	37	chr3	47449280	47449280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actggtacccatggctgcccAcgaggcctcgtcactgtaca	10	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47449280	47449280	A	C	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.1097	p.H366P	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	140	1	0.71	129	22	14.29	-	-	-	C	47449280	A	C	47449280	3	2	67	1	0	0	0	0	1	0	0	0	12871	159	6	5	1147	5	PTPN23	3	47449280	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	124784	47449280	150573150	268	3630										
DHX30	0	genome.wustl.edu	37	chr3	47859552	47859552	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtcagtgcaaacttcccccAccccgccttccacccatgtg	6	20	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	47859552	47859552	A	C	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	silent	c.69	p.P23	0.997	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	116	1	0.84	110	24	17.78	-	-	-	C	47859552	A	C	47859552	2	2	67	1	0	0	0	0	0	0	0	1	4540	146	6	5		5	DHX30	3	47859552	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	410272	47859552	150162878	269	3631										
ATRIP	0	genome.wustl.edu	37	chr3	48501287	48501287	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttctgagtctcctgctggcAcccccctgcagccaccaggg	11	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	48501287	48501287	A	C	SNP	ATRIP	ENST00000320211	human	ensembl	69_37n	1	known	missense	c.1027	p.T343P	0.840	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053	119	1	0.83	86	29	25.22	-	-	-	C	48501287	A	C	48501287	3	2	67	1	0	0	0	0	1	0	0	0	1209	159	6	5	1053	5	ATRIP	3	48501287	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	641735	48501287	149521143	270	3632										
SHISA5	0	genome.wustl.edu	37	chr3	48510836	48510836	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtactgcattgggtagggTgctgctggcatccctggctg	17	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	48510836	48510836	T	G	SNP	SHISA5	ENST00000296444	human	ensembl	69_37n	-1	known	silent	c.567	p.A189	0.999	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054	227	2	0.87	199	34	14.59	-	-	-	G	48510836	T	G	48510836	2	3	67	1	0	0	0	0	0	0	0	1	14372	1683	59	5		5	SHISA5	3	48510836	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9549	48510836	149511594	271	3633										
COL7A1	0	genome.wustl.edu	37	chr3	48606850	48606850	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctccccgaggtcctttgtcAccatccaagccccgaggccc	8	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	48606850	48606850	A	C	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.7644	p.G2548	1.000	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	204	0	0	209	30	12.55	-	-	-	C	48606850	A	C	48606850	2	2	67	1	0	0	0	0	0	0	0	1	3734	146	6	5		5	COL7A1	3	48606850	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	96014	48606850	149415580	272	3634										
COL7A1	0	genome.wustl.edu	37	chr3	48627147	48627147	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accgtcctcactgggcccagTgggtctagtggggagaggca	16	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	48627147	48627147	T	G	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.2055	p.P685	0.891	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	112	0	0	83	15	15.31	-	-	-	G	48627147	T	G	48627147	2	3	67	1	0	0	0	0	0	0	0	1	3734	1683	59	5		5	COL7A1	3	48627147	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20297	48627147	149395283	273	3635										
ARIH2	0	genome.wustl.edu	37	chr3	49012302	49012302	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggaggctgcaatcacatggTgagcagaagcctctgcagtt	13	9	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	49012302	49012302	T	G	SNP	ARIH2	ENST00000356401	human	ensembl	69_37n	1	known	splice_site	c.939+2	e8+2	1.000	-	-	-	no_errors	ARIH2	HGNC	ENSG00000177479	307	0	0	302	35	10.36	-	-	-	G	49012302	T	G	49012302	5	3	67	1	0	0	0	0	0	0	1	0	926	1710	59	5	971	5	ARIH2	3	49012302	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	385155	49012302	149010128	274	3636										
WDR6	0	genome.wustl.edu	37	chr3	49049680	49049680	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagcgttcgtatctggaaggTgggcgacctgcgagtgcctg	16	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	49049680	49049680	T	G	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.803	p.V268G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	99	1	0.99	63	19	23.17	-	-	-	G	49049680	T	G	49049680	3	3	67	1	0	0	0	0	1	0	0	0	17407	1696	59	5	809	5	WDR6	3	49049680	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	37378	49049680	148972750	275	3637										
QARS	0	genome.wustl.edu	37	chr3	49136807	49136807	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagttgttgatggcctcaggTgggaagccccgccgtcgcag	15	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	49136807	49136807	T	G	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	silent	c.1584	p.P528	0.004	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	197	1	0.5	112	20	15.15	-	-	-	G	49136807	T	G	49136807	2	3	67	1	0	0	0	0	0	0	0	1	12954	1683	59	5		5	QARS	3	49136807	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	87127	49136807	148885623	276	3638										
QARS	0	genome.wustl.edu	37	chr3	49137392	49137392	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccaccccattctacacccAccatttgtcccctgtgcggt	5	20	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	49137392	49137392	A	C	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	splice_site	c.1295+2	e14+2	0.998	-	-	-	no_errors	QARS	HGNC	ENSG00000172053	137	0	0	128	17	11.64	-	-	-	C	49137392	A	C	49137392	5	2	67	1	0	0	0	0	0	0	1	0	12954	173	6	5	1074	5	QARS	3	49137392	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	585	49137392	148885038	277	3639										
DAG1	0	genome.wustl.edu	37	chr3	49569309	49569309	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaaccaagaaaccacggacAccccggccagtgccccgggt	10	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	49569309	49569309	A	C	SNP	DAG1	ENST00000308775	human	ensembl	69_37n	1	known	silent	c.1365	p.T455	0.002	NULL	pfam_DAG1,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402	290	0	0	163	26	13.68	-	-	-	C	49569309	A	C	49569309	2	2	67	1	0	0	0	0	0	0	0	1	4257	146	6	5		5	DAG1	3	49569309	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	431917	49569309	148453121	278	3640										
ZMYND10	0	genome.wustl.edu	37	chr3	50380436	50380436	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctaagcatacggctcaaggTgctgagagagaggctagggg	17	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	50380436	50380436	T	G	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	missense	c.613	p.T205P	0.974	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	295	2	0.66	304	37	10.82	-	-	-	G	50380436	T	G	50380436	3	3	67	1	0	0	0	0	1	0	0	0	17801	1696	59	5	733	5	ZMYND10	3	50380436	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	811127	50380436	147641994	279	3641										
NPRL2	0	genome.wustl.edu	37	chr3	50386414	50386414	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtctggccgctgctcaatcAccttcaagtggatggtgttg	13	10	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	50386414	50386414	A	C	SNP	NPRL2	ENST00000232501	human	ensembl	69_37n	-1	known	missense	c.476	p.V159G	1.000	pfam_NPR2	pfam_NPR2	-	no_errors	NPRL2	HGNC	ENSG00000114388	120	1	0.81	52	11	17.46	-	-	-	C	50386414	A	C	50386414	3	2	67	1	0	0	0	0	1	0	0	0	10670	159	6	5	694	5	NPRL2	3	50386414	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5978	50386414	147636016	280	3642										
CACNA2D2	0	genome.wustl.edu	37	chr3	50415161	50415161	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccaaccctcccctttcctcAccttcttttccccagggcca	3	22	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	50415161	50415161	A	C	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	splice_site	c.1551+2	e16+2	0.956	-	-	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	91	0	0	122	23	15.75	-	-	-	C	50415161	A	C	50415161	5	2	67	1	0	0	0	0	0	0	1	0	2574	173	6	5	2001	5	CACNA2D2	3	50415161	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	28747	50415161	147607269	281	3643										
GRM2	0	genome.wustl.edu	37	chr3	51746747	51746747	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccgcaacatctgtgtggccAcctcggagaaagtgggccgt	13	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	51746747	51746747	A	C	SNP	GRM2	ENST00000395052	human	ensembl	69_37n	1	known	missense	c.709	p.T237P	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082	60	0	0	41	13	23.64	-	-	-	C	51746747	A	C	51746747	3	2	67	1	0	0	0	0	1	0	0	0	6848	159	6	5	715	5	GRM2	3	51746747	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1331586	51746747	146275683	282	3644										
IQCF3	0	genome.wustl.edu	37	chr3	51863730	51863730	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagacagaggcggcagaaggTaggtggggcccaggagggtg	21	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	51863730	51863730	T	G	SNP	IQCF3	ENST00000437810	human	ensembl	69_37n	1	known	splice_site	c.66+2	e2+2	0.997	-	-	-	no_errors	IQCF3	HGNC	ENSG00000229972	437	3	0.68	285	40	12.23	-	-	-	G	51863730	T	G	51863730	5	3	67	1	0	0	0	0	0	0	1	0	7863	1652	57	5	74	5	IQCF3	3	51863730	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	116983	51863730	146158700	283	3645										
RRP9	0	genome.wustl.edu	37	chr3	51967602	51967602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgagcctctttgattctccAccatcggccaagcctgcagg	9	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	51967602	51967602	A	C	SNP	RRP9	ENST00000232888	human	ensembl	69_37n	-1	known	missense	c.1348	p.W450G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RRP9	HGNC	ENSG00000114767	128	0	0	97	15	13.27	-	-	-	C	51967602	A	C	51967602	3	2	67	1	0	0	0	0	1	0	0	0	13777	159	6	5	83	5	RRP9	3	51967602	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	103872	51967602	146054828	284	3646										
STAB1	0	genome.wustl.edu	37	chr3	52555444	52555444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggacggcatgagtggcagTgggcagtgtctgtgccgttc	17	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	52555444	52555444	T	G	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.5976	p.S1992R	0.015	smart_EGF-like_Ca-bd,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	231	1	0.43	236	31	11.57	-	-	-	G	52555444	T	G	52555444	3	3	67	1	0	0	0	0	1	0	0	0	15328	1693	59	5	6198	5	STAB1	3	52555444	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	587842	52555444	145466986	285	3647										
C3orf78	0	genome.wustl.edu	37	chr3	52570791	52570791	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgttcaccagggcccaggTgagacggattctgcagcggg	15	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	52570791	52570791	T	G	SNP	C3orf78	ENST00000307106	human	ensembl	69_37n	1	putative	splice_site	c.18+2	e1+2	1.000	-	-	-	no_errors	C3orf78	HGNC	ENSG00000168273	199	2	0.98	162	23	12.23	-	-	-	G	52570791	T	G	52570791	5	3	67	1	0	0	0	0	0	0	1	0	2266	1696	59	5	22	5	C3orf78	3	52570791	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	15347	52570791	145451639	286	3648										
GNL3	0	genome.wustl.edu	37	chr3	52728121	52728121	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgaggagactacagcaggTgaggcaggcaaaaggggttc	16	7	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	52728121	52728121	T	G	SNP	GNL3	ENST00000418458	human	ensembl	69_37n	1	known	splice_site	c.1567+2	e14+2	0.982	-	-	-	no_errors	GNL3	HGNC	ENSG00000163938	181	0	0	116	15	11.28	-	-	-	G	52728121	T	G	52728121	5	3	67	1	0	0	0	0	0	0	1	0	6589	1710	59	5	1623	5	GNL3	3	52728121	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	157330	52728121	145294309	287	3649										
FLNB	0	genome.wustl.edu	37	chr3	58090879	58090879	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggggccctgggctccatggTgggattgtcgggcggtcagc	19	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	58090879	58090879	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	silent	c.1683	p.G561	0.001	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	256	0	0	246	29	10.55	-	-	-	G	58090879	T	G	58090879	2	3	67	1	0	0	0	0	0	0	0	1	5980	1683	59	5		5	FLNB	3	58090879	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5362758	58090879	139931551	288	3650										
FLNB	0	genome.wustl.edu	37	chr3	58156439	58156439	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attatgtgctggctgtgaagTggggggaggaacacatccct	15	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	58156439	58156439	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.7759	p.W2587G	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	174	0	0	119	16	11.85	-	-	-	G	58156439	T	G	58156439	3	3	67	1	0	0	0	0	1	0	0	0	5980	1696	59	5	8038	5	FLNB	3	58156439	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	65560	58156439	139865991	289	3651										
FAM3D	0	genome.wustl.edu	37	chr3	58635054	58635054	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atactcacggatctccttggTgggcgaggctgctggagaga	15	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	58635054	58635054	T	G	SNP	FAM3D	ENST00000358781	human	ensembl	69_37n	-1	known	missense	c.133	p.T45P	0.000	NULL	NULL	-	no_errors	FAM3D	HGNC	ENSG00000198643	175	0	0	131	16	10.88	-	-	-	G	58635054	T	G	58635054	3	3	67	1	0	0	0	0	1	0	0	0	5605	1696	59	5	569	5	FAM3D	3	58635054	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	478615	58635054	139387376	290	3652										
MAGI1	0	genome.wustl.edu	37	chr3	65376920	65376920	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagcttgggcctctgcaggTgggaactcggggagcacctg	18	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	65376920	65376920	T	G	SNP	MAGI1	ENST00000460329	human	ensembl	69_37n	-1	putative	missense	c.1955	p.H652P	0.998	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,smart_PDZ,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAGI1	HGNC	ENSG00000151276	157	0	0	177	28	13.66	-	-	-	G	65376920	T	G	65376920	3	3	67	1	0	0	0	0	1	0	0	0	9261	1683	59	5	2349	5	MAGI1	3	65376920	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6741866	65376920	132645510	291	3653										
MAGI1	0	genome.wustl.edu	37	chr3	65416463	65416463	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggttcatcccctccaaccAccgtgaagccaaagccacga	7	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	65416463	65416463	A	C	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.1457	p.V486G	0.997	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	165	0	0	152	26	14.61	-	-	-	C	65416463	A	C	65416463	3	2	67	1	0	0	0	0	1	0	0	0	9261	159	6	5	3217	5	MAGI1	3	65416463	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	39543	65416463	132605967	292	3654										
MITF	0	genome.wustl.edu	37	chr3	69928493	69928493	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taaacgtcagtgtgcccaccAcccttccctctgccacgcag	7	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	69928493	69928493	A	C	SNP	MITF	ENST00000448226	human	ensembl	69_37n	1	known	missense	c.313	p.T105P	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MITF	HGNC	ENSG00000187098	150	1	0.65	83	21	20.19	-	-	-	C	69928493	A	C	69928493	3	2	67	1	0	0	0	0	1	0	0	0	9667	159	6	5	484	5	MITF	3	69928493	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4512030	69928493	128093937	293	3655										
CNTN3	0	genome.wustl.edu	37	chr3	74347270	74347270	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caccactgtctggatccaggTggtaaccccaagagggcgga	13	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	74347270	74347270	T	G	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.2239	p.T747P	0.005	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	271	1	0.37	222	28	11.16	-	-	-	G	74347270	T	G	74347270	3	3	67	1	0	0	0	0	1	0	0	0	3672	1696	59	5	871	5	CNTN3	3	74347270	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4418777	74347270	123675160	294	3656										
CNTN3	0	genome.wustl.edu	37	chr3	74350638	74350638	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caacccgaaattcatattccAcccatgggtttaactcaact	4	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	74350638	74350638	A	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.2006	p.V669G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	180	1	0.55	234	42	15.22	-	-	-	C	74350638	A	C	74350638	3	2	67	1	0	0	0	0	1	0	0	0	3672	159	6	5	1112	5	CNTN3	3	74350638	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3368	74350638	123671792	295	3657										
CADM2	0	genome.wustl.edu	37	chr3	85961657	85961657	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcacgaatccctcaatgccAcccctcaggtagccatgcag	7	16	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	85961657	85961657	A	C	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.643	p.T215P	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	104	1	0.94	50	14	21.88	-	-	-	C	85961657	A	C	85961657	3	2	67	1	0	0	0	0	1	0	0	0	2592	159	6	5	726	5	CADM2	3	85961657	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	11611019	85961657	112060773	296	3658										
ARL13B	0	genome.wustl.edu	37	chr3	93768359	93768359	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaacgccacccccacccccTcctcctggtgagtaaattga	6	19	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	93768359	93768359	T	C	SNP	ARL13B	ENST00000394222	human	ensembl	69_37n	1	known	silent	c.1134	p.P378	0.001	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379	148	0	0	110	29	20.86	-	-	-	C	93768359	T	C	93768359	2	2	67	1	0	0	0	0	0	0	0	1	931	1538	54	5		5	ARL13B	3	93768359	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7806702	93768359	104254071	297	3659										
TBC1D23	0	genome.wustl.edu	37	chr3	100021000	100021000	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagtctggctccatagctggTggggagcacctctgttttat	13	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	100021000	100021000	T	G	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	silent	c.1182	p.G394	0.361	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	120	0	0	159	18	10.17	-	-	-	G	100021000	T	G	100021000	2	3	67	1	0	0	0	0	0	0	0	1	15705	1683	59	5		5	TBC1D23	3	100021000	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6252641	100021000	98001430	298	3660										
KIAA2018	0	genome.wustl.edu	37	chr3	113378738	113378738	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtcgaacagaaccaggaggTggagcagggaggagtggcaa	18	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	113378738	113378738	T	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	silent	c.1791	p.P597	0.951	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	260	1	0.38	254	62	19.62	-	-	-	G	113378738	T	G	113378738	2	3	67	1	0	0	0	0	0	0	0	1	8320	1683	59	5		5	KIAA2018	3	113378738	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	13357738	113378738	84643692	299	3661										
GRAMD1C	0	genome.wustl.edu	37	chr3	113649659	113649659	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtccacttactggaaaatgcActgctgccactgaaaagcag	9	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	113649659	113649659	A	C	SNP	GRAMD1C	ENST00000358160	human	ensembl	69_37n	1	known	missense	c.1189	p.T397P	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1C	HGNC	ENSG00000178075	128	0	0	117	26	18.18	-	-	-	C	113649659	A	C	113649659	3	2	67	1	0	0	0	0	1	0	0	0	6800	159	6	5	1231	5	GRAMD1C	3	113649659	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	270921	113649659	84372771	300	3662										
HGD	0	genome.wustl.edu	37	chr3	120347313	120347313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggtagttctcatccaaacAcctggaggccttgagtcccc	10	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	120347313	120347313	A	C	SNP	HGD	ENST00000283871	human	ensembl	69_37n	-1	known	missense	c.1252	p.C418G	0.939	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924	182	0	0	183	24	11.59	-	-	-	C	120347313	A	C	120347313	3	2	67	1	0	0	0	0	1	0	0	0	7135	159	6	5	89	5	HGD	3	120347313	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6697654	120347313	77675117	301	3663										
ILDR1	0	genome.wustl.edu	37	chr3	121712521	121712521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcagatcccagggcctggAgggaattggggtgagccact	15	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	121712521	121712521	A	G	SNP	ILDR1	ENST00000344209	human	ensembl	69_37n	-1	known	missense	c.1075	p.S359P	0.001	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103	119	1	0.83	94	18	16.07	-	-	-	G	121712521	A	G	121712521	3	3	67	1	0	0	0	0	1	0	0	0	7763	304	11	5	573	5	ILDR1	3	121712521	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1365208	121712521	76309909	302	3664										
PDIA5	0	genome.wustl.edu	37	chr3	122811280	122811280	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acaagggaccatctgctgggTggactgtgggtatgtgctgg	17	7	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	122811280	122811280	T	G	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.248	p.V83G	0.989	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	235	1	0.42	179	32	15.17	-	-	-	G	122811280	T	G	122811280	3	3	67	1	0	0	0	0	1	0	0	0	11744	1696	59	5	258	5	PDIA5	3	122811280	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1098759	122811280	75211150	303	3665										
CCDC37	0	genome.wustl.edu	37	chr3	126155150	126155150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagagaggcaggacactggTatgccgctcacgacccccag	13	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	126155150	126155150	T	G	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	missense	c.1742	p.V581G	0.942	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	246	2	0.8	193	29	13.06	-	-	-	G	126155150	T	G	126155150	3	3	67	1	0	0	0	0	1	0	0	0	2835	1638	57	5	1801	5	CCDC37	3	126155150	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3343870	126155150	71867280	304	3666										
UROC1	0	genome.wustl.edu	37	chr3	126222925	126222925	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctcaagggctgctttatccAcctggggccatgagacatgg	12	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	126222925	126222925	A	C	SNP	UROC1	ENST00000290868	human	ensembl	69_37n	-1	known	missense	c.815	p.V272G	1.000	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	107	1	0.91	72	23	24.21	-	-	-	C	126222925	A	C	126222925	3	2	67	1	0	0	0	0	1	0	0	0	17125	173	6	5	1447	5	UROC1	3	126222925	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	67775	126222925	71799505	305	3667										
PLXNA1	0	genome.wustl.edu	37	chr3	126722199	126722199	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggacctctcaaaccccggTggccggcctgccctggccta	12	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	126722199	126722199	T	G	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	silent	c.1404	p.G468	0.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	68	0	0	25	8	24.24	-	-	-	G	126722199	T	G	126722199	2	3	67	1	0	0	0	0	0	0	0	1	12193	1683	59	5		5	PLXNA1	3	126722199	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	499274	126722199	71300231	306	3668										
MCM2	0	genome.wustl.edu	37	chr3	127325147	127325147	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catccatgtccgcatctcccAcctgcctctggtggaggagc	10	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	127325147	127325147	A	C	SNP	MCM2	ENST00000265056	human	ensembl	69_37n	1	known	missense	c.860	p.H287P	1.000	superfamily_NA-bd_OB-fold-like	pfam_MCM_DNA-dep_ATPase,pfam_MCM_2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111	97	1	0.98	69	22	24.18	-	-	-	C	127325147	A	C	127325147	3	2	67	1	0	0	0	0	1	0	0	0	9457	159	6	5	878	5	MCM2	3	127325147	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	602948	127325147	70697283	307	3669										
RHO	0	genome.wustl.edu	37	chr3	129249835	129249835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatcatgggcgttgccttcAcctgggtcatggcgctggcc	13	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	129249835	129249835	A	C	SNP	RHO	ENST00000296271	human	ensembl	69_37n	1	known	missense	c.478	p.T160P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Rhodopsin,prints_7TM_GPCR_Rhodpsn,prints_Opsin,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	RHO	HGNC	ENSG00000163914	93	0	0	55	17	23.29	-	-	-	C	129249835	A	C	129249835	3	2	67	1	0	0	0	0	1	0	0	0	13414	159	6	5	484	5	RHO	3	129249835	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1924688	129249835	68772595	308	3670										
COL6A5	0	genome.wustl.edu	37	chr3	130095497	130095497	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccctgcagaaagacggggTgaaaattatctccgtggggg	15	8	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	130095497	130095497	T	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.485	p.V162G	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	154	1	0.64	84	19	18.45	-	-	-	G	130095497	T	G	130095497	3	3	67	1	0	0	0	0	1	0	0	0	3732	1696	59	5	491	5	COL6A5	3	130095497	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	845662	130095497	67926933	309	3671										
ESYT3	0	genome.wustl.edu	37	chr3	138178097	138178097	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgtgaacgggatccaggTgggtggagcccggtggggct	21	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	138178097	138178097	T	G	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	splice_site	c.648+2	e5+2	0.994	-	-	-	no_errors	ESYT3	HGNC	ENSG00000158220	179	1	0.55	180	25	12.2	-	-	-	G	138178097	T	G	138178097	5	3	67	1	0	0	0	0	0	0	1	0	5303	1710	59	5	668	5	ESYT3	3	138178097	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8082600	138178097	59844333	310	3672										
PIK3CB	0	genome.wustl.edu	37	chr3	138382746	138382746	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagatcctgaggagcagctcAcctggccagtttttttgacc	10	12	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	138382746	138382746	A	C	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	splice_site	c.2796+2	e19+2	1.000	-	-	-	no_errors	PIK3CB	HGNC	ENSG00000051382	91	0	0	138	19	12.03	-	-	-	C	138382746	A	C	138382746	5	2	67	1	0	0	0	0	0	0	1	0	11988	173	6	5	428	5	PIK3CB	3	138382746	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	204649	138382746	59639684	311	3673										
MME	0	genome.wustl.edu	37	chr3	154886405	154886405	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttttcctgggacctggcaggTggacagcacgtatgtcatta	12	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	154886405	154886405	T	G	SNP	MME	ENST00000360490	human	ensembl	69_37n	1	known	silent	c.1905	p.G635	0.998	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549	211	1	0.47	170	23	11.92	-	-	-	G	154886405	T	G	154886405	2	3	67	1	0	0	0	0	0	0	0	1	9716	1683	59	5		5	MME	3	154886405	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	16503659	154886405	43136025	312	3674										
LAMP3	0	genome.wustl.edu	37	chr3	182871809	182871809	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttccagttgtatgagctggTggggtgatggtgggtggcag	20	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	182871809	182871809	T	G	SNP	LAMP3	ENST00000265598	human	ensembl	69_37n	-1	known	silent	c.420	p.P140	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	566	2	0.35	558	66	10.58	-	-	-	G	182871809	T	G	182871809	2	3	67	1	0	0	0	0	0	0	0	1	8673	1683	59	5		5	LAMP3	3	182871809	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	27985404	182871809	15150621	313	3675										
ABCC5	0	genome.wustl.edu	37	chr3	183705620	183705620	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatggacaggatgagcctggTgcggcagaagatccacacaa	14	9	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	183705620	183705620	T	G	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.529	p.T177P	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	166	0	0	149	25	14.2	-	-	-	G	183705620	T	G	183705620	3	3	67	1	0	0	0	0	1	0	0	0	56	1696	59	5	3928	5	ABCC5	3	183705620	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	833811	183705620	14316810	314	3676										
EIF2B5	0	genome.wustl.edu	37	chr3	183859753	183859753	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagacctacctgtggcagggTgttcgagtggcggctggagc	17	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	183859753	183859753	T	G	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	silent	c.1197	p.G399	0.648	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	199	1	0.5	108	29	21.17	-	-	-	G	183859753	T	G	183859753	2	3	67	1	0	0	0	0	0	0	0	1	5039	1683	59	5		5	EIF2B5	3	183859753	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	154133	183859753	14162677	315	3677										
AP2M1	0	genome.wustl.edu	37	chr3	183898461	183898461	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagctcttccctcagcttccAcccttgcagctttgctttgt	6	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	183898461	183898461	A	C	SNP	AP2M1	ENST00000431779	human	ensembl	69_37n	1	novel	missense	c.452	p.H151P	0.000	NULL	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,prints_Clathrin_mu	-	no_stop_codon:bad_bp_length_for_coding_region	AP2M1	HGNC	ENSG00000161203	191	0	0	236	40	14.34	-	-	-	C	183898461	A	C	183898461	3	2	67	1	0	0	0	0	1	0	0	0	743	174	6	5		5	AP2M1	3	183898461	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	38708	183898461	14123969	316	3678										
EIF4G1	0	genome.wustl.edu	37	chr3	184043713	184043713	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaggtagccgccccattgacAcctcacgactcaccaagatc	7	16	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	184043713	184043713	A	C	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.3217	p.T1073P	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	158	0	0	143	20	12.12	-	-	-	C	184043713	A	C	184043713	3	2	67	1	0	0	0	0	1	0	0	0	5073	159	6	5	3270	5	EIF4G1	3	184043713	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	145252	184043713	13978717	317	3679										
CLCN2	0	genome.wustl.edu	37	chr3	184073188	184073188	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagaatgaagatgaccagggTgaggaagacgttggcacgtg	17	5	0	6			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	184073188	184073188	T	G	SNP	CLCN2	ENST00000265593	human	ensembl	69_37n	-1	known	missense	c.1300	p.T434P	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	203	0	0	105	19	15.32	-	-	-	G	184073188	T	G	184073188	3	3	67	1	0	0	0	0	1	0	0	0	3493	1696	59	5	1448	5	CLCN2	3	184073188	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	29475	184073188	13949242	318	3680										
CLCN2	0	genome.wustl.edu	37	chr3	184075201	184075201	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagatgaaggcactgaaggTggcagcgaagaagccccgcc	15	10	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	184075201	184075201	T	G	SNP	CLCN2	ENST00000265593	human	ensembl	69_37n	-1	known	missense	c.847	p.T283P	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	96	0	0	43	10	18.87	-	-	-	G	184075201	T	G	184075201	3	3	67	1	0	0	0	0	1	0	0	0	3493	1696	59	5	1917	5	CLCN2	3	184075201	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2013	184075201	13947229	319	3681										
CHRD	0	genome.wustl.edu	37	chr3	184100265	184100265	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcacttgtgacactcactcAcccttcaggggaggtctggg	13	12	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	184100265	184100265	A	C	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	1	known	missense	c.788	p.H263P	0.805	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	76	0	0	75	21	21.43	-	-	-	C	184100265	A	C	184100265	3	2	67	1	0	0	0	0	1	0	0	0	3401	159	6	5	814	5	CHRD	3	184100265	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	25064	184100265	13922165	320	3682										
ETV5	0	genome.wustl.edu	37	chr3	185774947	185774947	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgggtcatcaagaagggTgaccaggaactgccacagct	14	10	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	185774947	185774947	T	G	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.1252	p.T418P	0.998	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	249	2	0.8	156	33	17.28	-	-	-	G	185774947	T	G	185774947	3	3	67	1	0	0	0	0	1	0	0	0	5319	1696	59	5	418	5	ETV5	3	185774947	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1674682	185774947	12247483	321	3683										
HRG	0	genome.wustl.edu	37	chr3	186395248	186395248	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcatccccatggacaccAcccccatggacaccatcctc	5	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	186395248	186395248	A	C	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	missense	c.1154	p.H385P	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	130	0	0	103	16	13.45	-	-	-	C	186395248	A	C	186395248	3	2	67	1	0	0	0	0	1	0	0	0	7405	159	6	5	1180	5	HRG	3	186395248	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	620301	186395248	11627182	322	3684										
TP63	0	genome.wustl.edu	37	chr3	189612207	189612207	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccagaccatctctttcccAccccgagatgagtggaatga	9	14	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	189612207	189612207	A	C	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	silent	c.1959	p.P653	0.934	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	128	0	0	84	26	23.21	-	-	-	C	189612207	A	C	189612207	2	2	67	1	0	0	0	0	0	0	0	1	16488	146	6	5		5	TP63	3	189612207	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3216959	189612207	8410223	323	3685										
OPA1	0	genome.wustl.edu	37	chr3	193343892	193343892	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgtggcagggtctgcttggTgagctcattctcttacaaca	11	10	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	193343892	193343892	T	G	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	silent	c.690	p.G230	1.000	NULL	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	64	0	0	83	15	15.31	-	-	-	G	193343892	T	G	193343892	2	3	67	1	0	0	0	0	0	0	0	1	10944	1683	59	5		5	OPA1	3	193343892	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3731685	193343892	4678538	324	3686										
LRRC15	0	genome.wustl.edu	37	chr3	194080849	194080849	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgctgaagacattgtcgggTagagaagagatgtggttgtc	15	4	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	194080849	194080849	T	G	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.942	p.L314	0.002	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	165	0	0	79	21	21	-	-	-	G	194080849	T	G	194080849	2	3	67	1	0	0	0	0	0	0	0	1	9036	1625	57	5		5	LRRC15	3	194080849	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	736957	194080849	3941581	325	3687										
MUC20	0	genome.wustl.edu	37	chr3	195447928	195447928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccttttcttcttctgctgggAggttggggtctctgggagct	14	9	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195447928	195447928	A	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.50	p.E17G	0.072	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	389	2	0.51	457	53	10.29	-	-	-	G	195447928	A	G	195447928	3	3	67	1	0	0	0	0	1	0	0	0	10048	304	11	5	52	5	MUC20	3	195447928	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1367079	195447928	2574502	326	3688										
MUC4	0	genome.wustl.edu	37	chr3	195505258	195505258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtggaaatgatggtctgggAggttgtggggggtggtgatg	23	1	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195505258	195505258	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12859	p.S4287P	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	305	2	0.65	268	42	13.5	-	-	-	G	195505258	A	G	195505258	3	3	67	1	0	0	0	0	1	0	0	0	10050	304	11	5	3471	5	MUC4	3	195505258	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	57330	195505258	2517172	327	3689										
MUC4	0	genome.wustl.edu	37	chr3	195515552	195515552	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgctgatgagggccgtggTgaaggttttaccagaccctg	15	8	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195515552	195515552	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.2899	p.T967P	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	385	3	0.77	202	33	13.98	-	-	-	G	195515552	T	G	195515552	3	3	67	1	0	0	0	0	1	0	0	0	10050	1696	59	5		5	MUC4	3	195515552	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10294	195515552	2506878	328	3690										
MUC4	0	genome.wustl.edu	37	chr3	195516059	195516059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtagctgtgcccgctgaggTggttcgtgaccctgaggagg	18	9	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195516059	195516059	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.2392	p.T798P	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	292	1	0.34	199	50	20	-	-	-	G	195516059	T	G	195516059	3	3	67	1	0	0	0	0	1	0	0	0	10050	1696	59	5		5	MUC4	3	195516059	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	507	195516059	2506371	329	3691										
MUC4	0	genome.wustl.edu	37	chr3	195516437	195516437	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcgagtgcccactggctgTgaaggaagaacctggggtgg	19	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195516437	195516437	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.2014	p.T672P	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	262	0	0	214	27	11.16	-	-	-	G	195516437	T	G	195516437	3	3	67	1	0	0	0	0	1	0	0	0	10050	1696	59	5		5	MUC4	3	195516437	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	378	195516437	2505993	330	3692										
ZDHHC19	0	genome.wustl.edu	37	chr3	195938155	195938155	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggggatggggctccttcAccagcggcgtggcatccgtt	16	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	195938155	195938155	A	C	SNP	ZDHHC19	ENST00000296326	human	ensembl	69_37n	-1	known	missense	c.32	p.V11G	0.019	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958	224	1	0.44	151	29	15.85	-	-	-	C	195938155	A	C	195938155	3	2	67	1	0	0	0	0	1	0	0	0	17705	159	6	5	925	5	ZDHHC19	3	195938155	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	421718	195938155	2084275	331	3693										
WDR53	0	genome.wustl.edu	37	chr3	196288326	196288326	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggacaggagaagaatgcccAcccgtccacttgactgccat	10	13	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	196288326	196288326	A	C	SNP	WDR53	ENST00000332629	human	ensembl	69_37n	-1	known	silent	c.21	p.G7	0.132	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798	124	0	0	93	21	18.42	-	-	-	C	196288326	A	C	196288326	2	2	67	1	0	0	0	0	0	0	0	1	17402	146	6	5		5	WDR53	3	196288326	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	350171	196288326	1734104	332	3694										
LRCH3	0	genome.wustl.edu	37	chr3	197562545	197562545	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgtgtgtggtgtatacagTggaacatgatctggatcaga	14	4	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	3	197562545	197562545	T	G	SNP	LRCH3	ENST00000438796	human	ensembl	69_37n	1	known	missense	c.1103	p.V368G	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	93	0	0	72	10	12.2	-	-	-	G	197562545	T	G	197562545	3	3	67	1	0	0	0	0	1	0	0	0	9000	1710	59	5	1137	5	LRCH3	3	197562545	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1274219	197562545	459885	333	3695										
POLN	0	genome.wustl.edu	37	chr4	2082698	2082698	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactgacctggccgtcaaggTgtgggaagcagccactgcag	14	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	2082698	2082698	T	G	SNP	POLN	ENST00000382865	human	ensembl	69_37n	-1	known	missense	c.2374	p.T792P	0.219	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	143	1	0.68	65	11	14.1	-	-	-	G	2082698	T	G	2082698	3	3	67	1	0	0	0	0	1	0	0	0	12281	1696	59	5	344	5	POLN	4	2082698	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		2082698	189071578	334	3696										
HTT	0	genome.wustl.edu	37	chr4	3210586	3210586	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctctcctccagtctcttcccAcccgctggacggggatgggc	11	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	3210586	3210586	A	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.6239	p.H2080P	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	105	0	0	104	22	17.32	-	-	-	C	3210586	A	C	3210586	3	2	67	1	0	0	0	0	1	0	0	0	7511	159	6	5	6421	5	HTT	4	3210586	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1127888	3210586	187943690	335	3697										
ADRA2C	0	genome.wustl.edu	37	chr4	3769448	3769448	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcgtgtgccgccgcaaggTggcccaggcgcgcgagaagc	17	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	3769448	3769448	T	G	SNP	ADRA2C	ENST00000330055	human	ensembl	69_37n	1	known	missense	c.1115	p.V372G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2C	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2C,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2C	HGNC	ENSG00000184160	44	0	0	36	15	29.41	-	-	-	G	3769448	T	G	3769448	3	3	67	1	0	0	0	0	1	0	0	0	339	1696	59	5	1117	5	ADRA2C	4	3769448	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	558862	3769448	187384828	336	3698										
CRMP1	0	genome.wustl.edu	37	chr4	5827261	5827261	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtggaggtttctgatgggTgggggctggtgtttagaagg	21	2	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	5827261	5827261	T	G	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	silent	c.1929	p.P643	0.511	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	281	2	0.71	363	51	12.29	-	-	-	G	5827261	T	G	5827261	2	3	67	1	0	0	0	0	0	0	0	1	3920	1683	59	5		5	CRMP1	4	5827261	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2057813	5827261	185327015	337	3699										
JAKMIP1	0	genome.wustl.edu	37	chr4	6083439	6083439	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcatccgcttgttcttctccAccaggggcttcagctgaacc	8	15	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	6083439	6083439	A	C	SNP	JAKMIP1	ENST00000409021	human	ensembl	69_37n	-1	known	missense	c.998	p.V333G	1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969	150	1	0.65	210	28	11.62	-	-	-	C	6083439	A	C	6083439	3	2	67	1	0	0	0	0	1	0	0	0	7994	159	6	5	1636	5	JAKMIP1	4	6083439	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	256178	6083439	185070837	338	3700										
LDB2	0	genome.wustl.edu	37	chr4	16504486	16504486	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcagagttggctctcctaccAccatcacatcctgtgaacag	7	14	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	16504486	16504486	A	C	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.902	p.V301G	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	143	1	0.69	155	35	18.42	-	-	-	C	16504486	A	C	16504486	3	2	67	1	0	0	0	0	1	0	0	0	8750	159	6	5	223	5	LDB2	4	16504486	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10421047	16504486	174649790	339	3701										
GPR125	0	genome.wustl.edu	37	chr4	22414927	22414927	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttcagcaaatcgaaatcccAccgggctgcaacagcatctg	9	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	22414927	22414927	A	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2110	p.W704G	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	152	0	0	121	28	18.79	-	-	-	C	22414927	A	C	22414927	3	2	67	1	0	0	0	0	1	0	0	0	6689	159	6	5	1879	5	GPR125	4	22414927	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5910441	22414927	168739349	340	3702										
LIAS	0	genome.wustl.edu	37	chr4	39465211	39465211	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggagaatatgccaccgccAcagccacgatcatggtaggg	13	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	39465211	39465211	A	C	SNP	LIAS	ENST00000261434	human	ensembl	69_37n	1	known	missense	c.379	p.T127P	1.000	smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897	131	1	0.75	90	24	20.69	-	-	-	C	39465211	A	C	39465211	3	2	67	1	0	0	0	0	1	0	0	0	8833	159	6	5	393	5	LIAS	4	39465211	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	17050284	39465211	151689065	341	3703										
APBB2	0	genome.wustl.edu	37	chr4	40946936	40946936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctaagtgaccctttcctagaAccctggagatctgctgggat	10	11	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	40946936	40946936	A	C	SNP	APBB2	ENST00000513611	human	ensembl	69_37n	-1	novel	missense	c.958	p.F320V	0.642	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	APBB2	HGNC	ENSG00000163697	111	0	0	109	15	12.1	-	-	-	C	40946936	A	C	40946936	3	2	67	1	0	0	0	0	1	0	0	0	762	30	2	5	1337	5	APBB2	4	40946936	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1481725	40946936	150207340	342	3704										
LIMCH1	0	genome.wustl.edu	37	chr4	41689909	41689909	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttctctccctgttctcccAcccctcccggtcagtcacca	4	21	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	41689909	41689909	A	C	SNP	LIMCH1	ENST00000503057	human	ensembl	69_37n	1	known	missense	c.4141	p.T1381P	0.995	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042	124	1	0.8	106	20	15.87	-	-	-	C	41689909	A	C	41689909	3	2	67	1	0	0	0	0	1	0	0	0	8852	159	6	5	3111	5	LIMCH1	4	41689909	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	742973	41689909	149464367	343	3705										
SPATA18	0	genome.wustl.edu	37	chr4	52943021	52943021	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagatctgccagcccctccAccgctgtcaaggtcaggaga	11	15	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	52943021	52943021	A	C	SNP	SPATA18	ENST00000295213	human	ensembl	69_37n	1	known	missense	c.835	p.T279P	0.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	41	0	0	35	5	12.5	-	-	-	C	52943021	A	C	52943021	3	2	67	1	0	0	0	0	1	0	0	0	15094	159	6	5	861	5	SPATA18	4	52943021	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	11253112	52943021	138211255	344	3706										
SCFD2	0	genome.wustl.edu	37	chr4	54231506	54231506	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcgtagtggagtccacatcAcccaggcttcccagcttcct	9	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	54231506	54231506	A	C	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	silent	c.603	p.G201	0.123	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	122	0	0	79	17	17.71	-	-	-	C	54231506	A	C	54231506	2	2	67	1	0	0	0	0	0	0	0	1	13977	146	6	5		5	SCFD2	4	54231506	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1288485	54231506	136922770	345	3707										
LNX1	0	genome.wustl.edu	37	chr4	54342967	54342967	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatggggaccagtcactgggTggggccatgttgtggttgga	19	6	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	54342967	54342967	T	G	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	silent	c.1845	p.P615	0.001	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	296	2	0.67	204	25	10.92	-	-	-	G	54342967	T	G	54342967	2	3	67	1	0	0	0	0	0	0	0	1	8921	1683	59	5		5	LNX1	4	54342967	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	111461	54342967	136811309	346	3708										
PPAT	0	genome.wustl.edu	37	chr4	57301633	57301633	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctctcggatccccaactccTccagctccatgtcgccgccg	7	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	57301633	57301633	T	C	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	missense	c.11	p.E4G	1.000	pirsf_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	58	0	0	33	9	21.43	-	-	-	C	57301633	T	C	57301633	3	2	67	1	0	0	0	0	1	0	0	0	12375	1551	54	5	1586	5	PPAT	4	57301633	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2958666	57301633	133852643	347	3709										
TMPRSS11D	0	genome.wustl.edu	37	chr4	68688168	68688168	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcttactatccccacaataaAccaaagccgccgtgagtctt	6	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	68688168	68688168	A	C	SNP	TMPRSS11D	ENST00000283916	human	ensembl	69_37n	-1	known	missense	c.1144	p.F382V	0.993	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_SEA,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802	83	0	0	46	14	22.95	-	-	-	C	68688168	A	C	68688168	3	2	67	1	0	0	0	0	1	0	0	0	16336	43	2	5	116	5	TMPRSS11D	4	68688168	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	11386535	68688168	122466108	348	3710										
SHROOM3	0	genome.wustl.edu	37	chr4	77660025	77660025	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagcccagtggggcatacccAccctgtcatctttcccctgc	9	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	77660025	77660025	A	C	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	silent	c.699	p.P233	0.222	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	85	0	0	56	19	25	-	-	-	C	77660025	A	C	77660025	2	2	67	1	0	0	0	0	0	0	0	1	14384	146	6	5		5	SHROOM3	4	77660025	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8971857	77660025	113494251	349	3711										
FRAS1	0	genome.wustl.edu	37	chr4	79353723	79353723	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttactgttgccagtaaaagcAcagccataatcactaggtca	7	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	79353723	79353723	A	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.5182	p.T1728P	0.999	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	205	1	0.49	102	20	16.39	-	-	-	C	79353723	A	C	79353723	3	2	67	1	0	0	0	0	1	0	0	0	6090	159	6	5	5332	5	FRAS1	4	79353723	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1693698	79353723	111800553	350	3712										
GPRIN3	0	genome.wustl.edu	37	chr4	90169455	90169455	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agatggcaggctcaggctggTggctgtcttggtctgtctgt	16	8	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	90169455	90169455	T	G	SNP	GPRIN3	ENST00000333209	human	ensembl	69_37n	-1	known	missense	c.1807	p.T603P	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	94	0	0	64	14	17.72	-	-	-	G	90169455	T	G	90169455	3	3	67	1	0	0	0	0	1	0	0	0	6782	1696	59	5	527	5	GPRIN3	4	90169455	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10815732	90169455	100984821	351	3713										
SNCA	0	genome.wustl.edu	37	chr4	90743458	90743458	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caatgctccctgctccctccActgtcttctgggctactgct	7	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	90743458	90743458	A	C	SNP	SNCA	ENST00000336904	human	ensembl	69_37n	-1	known	missense	c.245	p.V82G	1.000	pfam_Synuclein,prints_Synuclein_gamma	pfam_Synuclein,prints_Synuclein,prints_Synuclein_alpha,prints_Synuclein_gamma	-	no_errors	SNCA	HGNC	ENSG00000145335	189	1	0.52	210	24	10.26	-	-	-	C	90743458	A	C	90743458	3	2	67	1	0	0	0	0	1	0	0	0	14929	159	6	5	189	5	SNCA	4	90743458	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	574003	90743458	100410818	352	3714										
GRID2	0	genome.wustl.edu	37	chr4	94006294	94006294	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaccccaaggagtggctgTggactcacccggagcaacag	15	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	94006294	94006294	T	G	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.393	p.C131W	0.998	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	129	1	0.77	88	26	22.61	-	-	-	G	94006294	T	G	94006294	3	3	67	1	0	0	0	0	1	0	0	0	6823	1702	59	5	403	5	GRID2	4	94006294	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3262836	94006294	97147982	353	3715										
NPNT	0	genome.wustl.edu	37	chr4	106859498	106859498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaaactgtcagtatggctgTgatgttgttaaaggacaaat	11	5	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	106859498	106859498	T	G	SNP	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	missense	c.426	p.C142W	0.999	smart_EGF-like	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	94	0	0	115	22	16.06	-	-	-	G	106859498	T	G	106859498	3	3	67	1	0	0	0	0	1	0	0	0	10663	1702	59	5	593	5	NPNT	4	106859498	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12853204	106859498	84294778	354	3716										
NPNT	0	genome.wustl.edu	37	chr4	106888465	106888465	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgtcattcaggcacaaggTgacggggctgcactctggca	13	12	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	106888465	106888465	T	G	SNP	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	missense	c.1466	p.V489G	0.998	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	87	0	0	37	6	13.95	-	-	-	G	106888465	T	G	106888465	3	3	67	1	0	0	0	0	1	0	0	0	10663	1696	59	5	1657	5	NPNT	4	106888465	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28967	106888465	84265811	355	3717										
ENPEP	0	genome.wustl.edu	37	chr4	111397746	111397746	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactgcgccagctccttcccAcctgccttcttccacggcca	6	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	111397746	111397746	A	C	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.176	p.H59P	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	99	1	0.99	76	33	29.73	-	-	-	C	111397746	A	C	111397746	3	2	67	1	0	0	0	0	1	0	0	0	5165	159	6	5	178	5	ENPEP	4	111397746	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4509281	111397746	79756530	356	3718										
ENPEP	0	genome.wustl.edu	37	chr4	111397760	111397760	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcccacctgccttcttccAcggccagcccctcaggtcct	6	21	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	111397760	111397760	A	C	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.190	p.T64P	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	100	0	0	77	19	19.59	-	-	-	C	111397760	A	C	111397760	3	2	67	1	0	0	0	0	1	0	0	0	5165	159	6	5	192	5	ENPEP	4	111397760	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14	111397760	79756516	357	3719										
SYNPO2	0	genome.wustl.edu	37	chr4	119948375	119948375	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agatgcgggactgccccgggTggaagtgatcctcgactgct	15	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	119948375	119948375	T	G	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.851	p.V284G	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	168	1	0.58	69	16	18.6	-	-	-	G	119948375	T	G	119948375	3	3	67	1	0	0	0	0	1	0	0	0	15549	1696	59	5	861	5	SYNPO2	4	119948375	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8550615	119948375	71205901	358	3720										
EXOSC9	0	genome.wustl.edu	37	chr4	122734398	122734398	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccacatacaggaaagaaggTggaaagtttggttttgcaga	12	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	122734398	122734398	T	G	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	silent	c.837	p.G279	0.998	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	301	1	0.33	209	33	13.52	-	-	-	G	122734398	T	G	122734398	2	3	67	1	0	0	0	0	0	0	0	1	5358	1683	59	5		5	EXOSC9	4	122734398	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2786023	122734398	68419878	359	3721										
KIAA1109	0	genome.wustl.edu	37	chr4	123156060	123156060	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcaaacttgaagagttgacAccttccagtagctctgcatt	7	10	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	123156060	123156060	A	C	SNP	KIAA1109	ENST00000424425	human	ensembl	69_37n	1	novel	missense	c.2950	p.T984P	0.966	NULL	pfam_MMADHC	-	no_start_codon:pseudogene	KIAA1109	HGNC	ENSG00000138688	217	2	0.91	183	31	14.49	-	-	-	C	123156060	A	C	123156060	3	2	67	1	0	0	0	0	1	0	0	0	8260	146	6	5	3554	5	KIAA1109	4	123156060	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	421662	123156060	67998216	360	3722										
ADAD1	0	genome.wustl.edu	37	chr4	123333833	123333833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttatctgactgtttactgtcCtaaagatggtgttaatagaa	8	5	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	123333833	123333833	C	T	SNP	ADAD1	ENST00000296513	human	ensembl	69_37n	1	known	missense	c.1118	p.P373L	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	156	0	0	133	57	30	-	-	-	T	123333833	C	T	123333833	3	4	67	1	0	0	0	0	1	0	0	0	231	681	24	4	1148	4	ADAD1	4	123333833	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	177773	123333833	67820443	361	3723										
PHF17	0	genome.wustl.edu	37	chr4	129776883	129776883	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgctgtgtccgaagaagggTggagctatgaagcccacccg	14	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	129776883	129776883	T	G	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	silent	c.795	p.G265	0.047	superfamily_Znf_FYVE_PHD	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	222	1	0.44	149	21	12.35	-	-	-	G	129776883	T	G	129776883	2	3	67	1	0	0	0	0	0	0	0	1	11902	1683	59	5		5	PHF17	4	129776883	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6443050	129776883	61377393	362	3724										
PHF17	0	genome.wustl.edu	37	chr4	129783115	129783115	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgggaggaggcccaccgggTgagtgtccgtaagcagaagc	17	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	129783115	129783115	T	G	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	missense	c.1238	p.V413G	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	130	1	0.76	89	19	17.59	-	-	-	G	129783115	T	G	129783115	3	3	67	1	0	0	0	0	1	0	0	0	11902	1696	59	5	1268	5	PHF17	4	129783115	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6232	129783115	61371161	363	3725										
LRBA	0	genome.wustl.edu	37	chr4	151749400	151749400	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggctccaaggcaggctggTggcagaagggcaggatccac	17	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	4	151749400	151749400	T	G	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.1061	p.H354P	0.973	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	193	1	0.52	107	25	18.94	-	-	-	G	151749400	T	G	151749400	3	3	67	1	0	0	0	0	1	0	0	0	8997	1683	59	5	3604	5	LRBA	4	151749400	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21966285	151749400	39404876	364	3726										
AHRR	0	genome.wustl.edu	37	chr5	434540	434540	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggggccagtgacaggagccAcccagccaccttccctacca	11	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	434540	434540	A	C	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	missense	c.1751	p.H584P	0.003	NULL	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	59	0	0	65	17	20.48	-	-	-	C	434540	A	C	434540	3	2	67	1	0	0	0	0	1	0	0	0	417	159	6	5	1797	5	AHRR	5	434540	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		434540	180480720	365	3727										
SLC6A19	0	genome.wustl.edu	37	chr5	1221900	1221900	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggctggagtgccctccctcAccatccctggctatgccatc	9	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	1221900	1221900	A	C	SNP	SLC6A19	ENST00000304460	human	ensembl	69_37n	1	known	missense	c.1786	p.T596P	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358	145	1	0.68	111	28	20	-	-	-	C	1221900	A	C	1221900	3	2	67	1	0	0	0	0	1	0	0	0	14771	159	6	5	1832	5	SLC6A19	5	1221900	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	787360	1221900	179693360	366	3728										
SLC6A18	0	genome.wustl.edu	37	chr5	1244398	1244398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctgggaactactggctggAgattttcgacaattttgccg	12	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	1244398	1244398	A	G	SNP	SLC6A18	ENST00000324642	human	ensembl	69_37n	1	known	missense	c.1406	p.E469G	0.987	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	123	1	0.81	156	38	19.39	-	-	-	G	1244398	A	G	1244398	3	3	67	1	0	0	0	0	1	0	0	0	14770	304	11	5	1444	5	SLC6A18	5	1244398	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	22498	1244398	179670862	367	3729										
ADAMTS16	0	genome.wustl.edu	37	chr5	5306780	5306780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccgcttccatgccccaggcAccccccatttgctgctgcgg	9	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	5306780	5306780	A	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.3350	p.H1117P	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	48	0	0	24	11	30.56	-	-	-	C	5306780	A	C	5306780	3	2	67	1	0	0	0	0	1	0	0	0	261	159	6	5	3432	5	ADAMTS16	5	5306780	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4062382	5306780	175608480	368	3730										
KIAA0947	0	genome.wustl.edu	37	chr5	5464643	5464643	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgtgcctggccgactcccAccctgtgcatctggccacgc	10	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	5464643	5464643	A	C	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	silent	c.5196	p.P1732	0.095	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	59	0	0	34	8	19.05	-	-	-	C	5464643	A	C	5464643	2	2	67	1	0	0	0	0	0	0	0	1	8254	146	6	5		5	KIAA0947	5	5464643	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	157863	5464643	175450617	369	3731										
SEMA5A	0	genome.wustl.edu	37	chr5	9044570	9044570	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggggcaggtgagacggggTggatgacagtcgcatcgtgg	22	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	9044570	9044570	T	G	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.3020	p.H1007P	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	207	2	0.95	166	32	16	-	-	-	G	9044570	T	G	9044570	3	3	67	1	0	0	0	0	1	0	0	0	14125	1696	59	5	212	5	SEMA5A	5	9044570	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3579927	9044570	171870690	370	3732										
DAP	0	genome.wustl.edu	37	chr5	10681156	10681156	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggccatggggcaggctggTggactccaggctcacttgcg	18	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	10681156	10681156	T	G	SNP	DAP	ENST00000432074	human	ensembl	69_37n	-1	putative	missense	c.278	p.H93P	0.000	NULL	NULL	-	no_errors	DAP	HGNC	ENSG00000112977	167	0	0	145	24	14.2	-	-	-	G	10681156	T	G	10681156	3	3	67	1	0	0	0	0	1	0	0	0	4265	1711	59	5		5	DAP	5	10681156	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1636586	10681156	170234104	371	3733										
DAP	0	genome.wustl.edu	37	chr5	10681247	10681247	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgcggcttctggtgagccAcctgcgcagccgccgggggg	17	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	10681247	10681247	A	C	SNP	DAP	ENST00000230895	human	ensembl	69_37n	-1	known	missense	c.230	p.V77G	1.000	NULL	NULL	-	no_errors	DAP	HGNC	ENSG00000112977	135	1	0.72	79	26	24.3	-	-	-	C	10681247	A	C	10681247	3	2	67	1	0	0	0	0	1	0	0	0	4265	159	6	5	82	5	DAP	5	10681247	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	91	10681247	170234013	372	3734										
ADAMTS12	0	genome.wustl.edu	37	chr5	33561244	33561244	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatctgggtgctgcactccAcccttctccagtaggccccc	8	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	33561244	33561244	A	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.4013	p.V1338G	0.996	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	105	0	0	81	14	14.58	-	-	-	C	33561244	A	C	33561244	3	2	67	1	0	0	0	0	1	0	0	0	257	159	6	5	791	5	ADAMTS12	5	33561244	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	22879997	33561244	147354016	373	3735										
MEF2C	0	genome.wustl.edu	37	chr5	88024382	88024382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccagttactgaaccaaggTgaagagcgctggcggtgtta	14	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	88024382	88024382	T	G	SNP	MEF2C	ENST00000437473	human	ensembl	69_37n	-1	known	missense	c.1028	p.H343P	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	140	0	0	134	20	12.9	-	-	-	G	88024382	T	G	88024382	3	3	67	1	0	0	0	0	1	0	0	0	9528	1696	59	5	401	5	MEF2C	5	88024382	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	54463138	88024382	92890878	374	3736										
ERAP1	0	genome.wustl.edu	37	chr5	96139334	96139334	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccctagatatctgcaggTggtgactatgcaggatgatg	14	7	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	96139334	96139334	T	G	SNP	ERAP1	ENST00000296754	human	ensembl	69_37n	-1	known	missense	c.296	p.H99P	0.002	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	269	2	0.74	250	30	10.68	-	-	-	G	96139334	T	G	96139334	3	3	67	1	0	0	0	0	1	0	0	0	5240	1696	59	5	2634	5	ERAP1	5	96139334	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8114952	96139334	84775926	375	3737										
C5orf56	0	genome.wustl.edu	37	chr5	131755622	131755622	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggagagttgaatgccagccAccagccatgggtgagtggag	16	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	131755622	131755622	A	C	SNP	C5orf56	ENST00000407797	human	ensembl	69_37n	1	putative	missense	c.38	p.H13P	0.000	NULL	NULL	-	no_errors	C5orf56	HGNC	ENSG00000197536	264	0	0	142	20	12.27	-	-	-	C	131755622	A	C	131755622	3	2	67	1	0	0	0	0	1	0	0	0	2333	159	6	5	40	5	C5orf56	5	131755622	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	35616288	131755622	49159638	376	3738										
IRF1	0	genome.wustl.edu	37	chr5	131825243	131825243	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgggcagtgacctgccccAcccgaggtcacttagttacc	10	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	131825243	131825243	A	C	SNP	IRF1	ENST00000476613	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	IRF1	HGNC	ENSG00000125347	65	0	0	50	11	18.03	-	-	-	C	131825243	A	C	131825243	1	2	67	0	1	0	0	0	0	0	0	0	7881	174	6	5		5	IRF1	5	131825243	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	69621	131825243	49090017	377	3739										
SEPT8	0	genome.wustl.edu	37	chr5	132087773	132087773	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagcactgtatggcgggccAccagctgctgcagttcaagg	14	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	132087773	132087773	A	C	SNP	SEPT8	ENST00000378719	human	ensembl	69_37n	-1	known	missense	c.1387	p.W463G	1.000	NULL	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402	53	0	0	30	14	31.82	-	-	-	C	132087773	A	C	132087773	3	2	67	1	0	0	0	0	1	0	0	0	14158	159	6	5	68	5	SEPT8	5	132087773	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	262530	132087773	48827487	378	3740										
GDF9	0	genome.wustl.edu	37	chr5	132199874	132199874	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttgtgccgggtacagggggTgaagagccgaacagtgttgt	17	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	132199874	132199874	T	G	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.352	p.T118P	1.000	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	282	0	0	175	29	14.15	-	-	-	G	132199874	T	G	132199874	3	3	67	1	0	0	0	0	1	0	0	0	6371	1696	59	5	1020	5	GDF9	5	132199874	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	112101	132199874	48715386	379	3741										
PHF15	0	genome.wustl.edu	37	chr5	133896532	133896532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggccattgagacgcaggAggggctgggcatcgagtacg	18	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	133896532	133896532	A	G	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.617	p.E206G	1.000	superfamily_Znf_FYVE_PHD	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	181	1	0.55	121	19	13.48	-	-	-	G	133896532	A	G	133896532	3	3	67	1	0	0	0	0	1	0	0	0	11900	304	11	5	587	5	PHF15	5	133896532	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1696658	133896532	47018728	380	3742										
KLHL3	0	genome.wustl.edu	37	chr5	137071327	137071327	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttatacatacatacctttcAccctccattgtgtgaggccc	5	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	137071327	137071327	A	C	SNP	KLHL3	ENST00000309755	human	ensembl	69_37n	-1	known	silent	c.9	p.G3	0.994	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021	224	1	0.44	230	36	13.53	-	-	-	C	137071327	A	C	137071327	2	2	67	1	0	0	0	0	0	0	0	1	8436	146	6	5		5	KLHL3	5	137071327	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3174795	137071327	43843933	381	3743										
KIF20A	0	genome.wustl.edu	37	chr5	137519736	137519736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggaagcaggaaacattaacAcctctctacacaccctgggc	8	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	137519736	137519736	A	C	SNP	KIF20A	ENST00000394894	human	ensembl	69_37n	1	known	missense	c.1294	p.T432P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	174	1	0.56	80	19	19	-	-	-	C	137519736	A	C	137519736	3	2	67	1	0	0	0	0	1	0	0	0	8338	159	6	5	1332	5	KIF20A	5	137519736	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	448409	137519736	43395524	382	3744										
CDC23	0	genome.wustl.edu	37	chr5	137524717	137524717	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaaactctgcgtgtgggggTattgttagcagagagtgaag	16	4	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	137524717	137524717	T	G	SNP	CDC23	ENST00000394886	human	ensembl	69_37n	-1	known	missense	c.1744	p.T582P	1.000	NULL	pfam_APC8,pfam_TPR-1,pfam_Transposase_InsH_N,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC23	HGNC	ENSG00000094880	323	2	0.61	202	31	13.3	-	-	-	G	137524717	T	G	137524717	3	3	67	1	0	0	0	0	1	0	0	0	3090	1638	57	5	53	5	CDC23	5	137524717	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4981	137524717	43390543	383	3745										
GFRA3	0	genome.wustl.edu	37	chr5	137589530	137589530	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgccactgcctcggcaggTgcagcttaaggcaacactgg	13	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	137589530	137589530	T	G	SNP	GFRA3	ENST00000274721	human	ensembl	69_37n	-1	known	missense	c.949	p.T317P	0.998	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	128	1	0.78	63	15	19.23	-	-	-	G	137589530	T	G	137589530	3	3	67	1	0	0	0	0	1	0	0	0	6401	1696	59	5	265	5	GFRA3	5	137589530	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	64813	137589530	43325730	384	3746										
FAM53C	0	genome.wustl.edu	37	chr5	137680989	137680989	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggcccaagattcctctcgAccctgcgccgcctcccctca	7	21	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	137680989	137680989	A	C	SNP	FAM53C	ENST00000239906	human	ensembl	69_37n	1	known	silent	c.612	p.R204	0.999	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	130	1	0.76	91	16	14.81	-	-	-	C	137680989	A	C	137680989	2	2	67	1	0	0	0	0	0	0	0	1	5627	262	10	5		5	FAM53C	5	137680989	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	91459	137680989	43234271	385	3747										
SIL1	0	genome.wustl.edu	37	chr5	138456756	138456756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgccactcatgcgtcgggTggaacacctccaggacttcg	11	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	138456756	138456756	T	G	SNP	SIL1	ENST00000265195	human	ensembl	69_37n	-1	known	missense	c.212	p.H71P	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725	206	2	0.96	140	24	14.2	-	-	-	G	138456756	T	G	138456756	3	3	67	1	0	0	0	0	1	0	0	0	14410	1696	59	5	1205	5	SIL1	5	138456756	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	775767	138456756	42458504	386	3748										
NRG2	0	genome.wustl.edu	37	chr5	139232027	139232027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgcctacctgtggctggAggtgggtgtggctgtggagc	20	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	139232027	139232027	A	G	SNP	NRG2	ENST00000545385	human	ensembl	69_37n	-1	known	missense	c.1540	p.S514P	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like	-	no_errors	NRG2	HGNC	ENSG00000158458	395	3	0.75	317	64	16.67	-	-	-	G	139232027	A	G	139232027	3	3	67	1	0	0	0	0	1	0	0	0	10721	304	11	5	1030	5	NRG2	5	139232027	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	775271	139232027	41683233	387	3749										
ANKHD1	0	genome.wustl.edu	37	chr5	139818175	139818175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacacggatgaaagcagaaaAcagccacaatgcaggacaag	11	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	139818175	139818175	A	C	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.590	p.N197T	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	149	1	0.67	88	23	20.72	-	-	-	C	139818175	A	C	139818175	3	2	67	1	0	0	0	0	1	0	0	0	628	43	2	5	600	5	ANKHD1	5	139818175	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	586148	139818175	41097085	388	3750										
HARS	0	genome.wustl.edu	37	chr5	140056374	140056374	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagcagccacactgcccacAcccaggggctcttcccctgc	8	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	140056374	140056374	A	C	SNP	HARS	ENST00000504156	human	ensembl	69_37n	-1	known	silent	c.1059	p.G353	0.743	pirsf_His-tRNA_synth_IIA,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-synth_IIa_subgr	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_His-tRNA_synth_IIA,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-synth_IIa_subgr	-	no_errors	HARS	HGNC	ENSG00000170445	117	1	0.84	116	22	15.83	-	-	-	C	140056374	A	C	140056374	2	2	67	1	0	0	0	0	0	0	0	1	7010	146	6	5		5	HARS	5	140056374	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	238199	140056374	40858886	389	3751										
PCDHA11	0	genome.wustl.edu	37	chr5	140249839	140249839	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcaggtgtcaacggacaggTgacctgctcgctgacgcccc	12	15	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	140249839	140249839	T	G	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1151	p.V384G	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	113	1	0.88	56	10	14.93	-	-	-	G	140249839	T	G	140249839	3	3	67	1	0	0	0	0	1	0	0	0	11594	1696	59	5	1153	5	PCDHA11	5	140249839	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	193465	140249839	40665421	390	3752										
PCDHA11	0	genome.wustl.edu	37	chr5	140250092	140250092	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcgtgaaggagaacaacccAccaggctgccacatcttcac	8	14	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	140250092	140250092	A	C	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	silent	c.1404	p.P468	0.069	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	120	0	0	53	14	20.59	-	-	-	C	140250092	A	C	140250092	2	2	67	1	0	0	0	0	0	0	0	1	11594	146	6	5		5	PCDHA11	5	140250092	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	253	140250092	40665168	391	3753										
PCDH1	0	genome.wustl.edu	37	chr5	141244740	141244740	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatgccccggatctcaatggTgggggcattgtcattcatgt	12	9	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	141244740	141244740	T	G	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	missense	c.1156	p.T386P	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	88	0	0	84	19	18.27	-	-	-	G	141244740	T	G	141244740	3	3	67	1	0	0	0	0	1	0	0	0	11579	1696	59	5	2653	5	PCDH1	5	141244740	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	994648	141244740	39670520	392	3754										
CSF1R	0	genome.wustl.edu	37	chr5	149433883	149433883	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccaagcctcaccccactcAcccgctctctcctgtcctct	3	24	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	149433883	149433883	A	C	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	splice_site	c.2763+2	e20+2	1.000	-	-	-	no_errors	CSF1R	HGNC	ENSG00000182578	98	1	1	40	10	19.61	-	-	-	C	149433883	A	C	149433883	5	2	67	1	0	0	0	0	0	0	1	0	3964	173	6	5	161	5	CSF1R	5	149433883	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8189143	149433883	31481377	393	3755										
PDGFRB	0	genome.wustl.edu	37	chr5	149497400	149497400	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctcagaaactcctcatccAcctgctggtacttctgctcc	5	17	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	149497400	149497400	A	C	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.2918	p.V973G	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	110	1	0.87	62	16	19.75	-	-	-	C	149497400	A	C	149497400	3	2	67	1	0	0	0	0	1	0	0	0	11735	159	6	5	410	5	PDGFRB	5	149497400	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	63517	149497400	31417860	394	3756										
TCOF1	0	genome.wustl.edu	37	chr5	149751663	149751663	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccccagcccctgggaaggTgggggatgtgacaccccagg	17	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	149751663	149751663	T	G	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	missense	c.734	p.V245G	0.253	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	88	0	0	51	12	18.75	-	-	-	G	149751663	T	G	149751663	3	3	67	1	0	0	0	0	1	0	0	0	15803	1696	59	5	760	5	TCOF1	5	149751663	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	254263	149751663	31163597	395	3757										
FAT2	0	genome.wustl.edu	37	chr5	150934068	150934068	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcatccaggtctgaagccAccagcctgtacacaggccca	8	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	150934068	150934068	A	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.3800	p.V1267G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	121	1	0.82	79	22	21.57	-	-	-	C	150934068	A	C	150934068	3	2	67	1	0	0	0	0	1	0	0	0	5736	159	6	5	9329	5	FAT2	5	150934068	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1182405	150934068	29981192	396	3758										
FAT2	0	genome.wustl.edu	37	chr5	150943058	150943058	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcttgggacatctggggTgggttgtcattggcatccgt	15	8	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	150943058	150943058	T	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.3402	p.P1134	0.951	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	121	0	0	88	13	12.87	-	-	-	G	150943058	T	G	150943058	2	3	67	1	0	0	0	0	0	0	0	1	5736	1683	59	5		5	FAT2	5	150943058	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8990	150943058	29972202	397	3759										
GALNT10	0	genome.wustl.edu	37	chr5	153783615	153783615	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgctggcctggcgggatggTgaactggaagcagaaacgtc	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	153783615	153783615	T	G	SNP	GALNT10	ENST00000377657	human	ensembl	69_37n	1	known	silent	c.21	p.G7	0.002	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	170	1	0.58	93	23	19.66	-	-	-	G	153783615	T	G	153783615	2	3	67	1	0	0	0	0	0	0	0	1	6258	1711	59	5		5	GALNT10	5	153783615	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2840557	153783615	27131645	398	3760										
C5orf4	0	genome.wustl.edu	37	chr5	154200868	154200868	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgaaggcaggaagggaaggTggtagccacagtgggagatg	20	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	154200868	154200868	T	G	SNP	C5orf4	ENST00000326080	human	ensembl	69_37n	-1	known	missense	c.797	p.H266P	1.000	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	C5orf4	HGNC	ENSG00000170271	357	0	0	286	61	17.43	-	-	-	G	154200868	T	G	154200868	3	3	67	1	0	0	0	0	1	0	0	0	2319	1696	59	5	212	5	C5orf4	5	154200868	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	417253	154200868	26714392	399	3761										
CYFIP2	0	genome.wustl.edu	37	chr5	156736761	156736761	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctttgcagcagctgcaggTggtgccccttttcggcgaca	12	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	156736761	156736761	T	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.911	p.V304G	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	114	0	0	132	20	13.16	-	-	-	G	156736761	T	G	156736761	3	3	67	1	0	0	0	0	1	0	0	0	4169	1696	59	5	945	5	CYFIP2	5	156736761	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2535893	156736761	24178499	400	3762										
CLINT1	0	genome.wustl.edu	37	chr5	157218852	157218852	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaatttgaggcagcaggaggTgggcctagagctgattgtga	17	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	157218852	157218852	T	G	SNP	CLINT1	ENST00000521615	human	ensembl	69_37n	-1	novel	missense	c.313	p.T105P	0.991	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	CLINT1	HGNC	ENSG00000113282	198	1	0.5	85	21	19.81	-	-	-	G	157218852	T	G	157218852	3	3	67	1	0	0	0	0	1	0	0	0	3561	1683	59	5	650	5	CLINT1	5	157218852	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	482091	157218852	23696408	401	3763										
CLINT1	0	genome.wustl.edu	37	chr5	157230673	157230673	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttacctgttgactggctggTgccatcaaacagatcaacaa	8	11	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	157230673	157230673	T	G	SNP	CLINT1	ENST00000296951	human	ensembl	69_37n	-1	known	missense	c.943	p.T315P	0.714	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	CLINT1	HGNC	ENSG00000113282	126	0	0	46	27	36.99	-	-	-	G	157230673	T	G	157230673	3	3	67	1	0	0	0	0	1	0	0	0	3561	1696	59	5	900	5	CLINT1	5	157230673	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	11821	157230673	23684587	402	3764										
EBF1	0	genome.wustl.edu	37	chr5	158139201	158139201	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agctgagccgttgaggaaggTgggggagccgcccaaattgg	18	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	158139201	158139201	T	G	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	missense	c.1510	p.T504P	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	94	0	0	68	23	25.27	-	-	-	G	158139201	T	G	158139201	3	3	67	1	0	0	0	0	1	0	0	0	4915	1696	59	5	277	5	EBF1	5	158139201	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	908528	158139201	22776059	403	3765										
RARS	0	genome.wustl.edu	37	chr5	167937620	167937620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacgttcgggtgaaacagtgCgcctcatggatcttctggga	13	10	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	167937620	167937620	C	T	SNP	RARS	ENST00000231572	human	ensembl	69_37n	1	known	missense	c.1381	p.R461C	1.000	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS	HGNC	ENSG00000113643	99	1	1	72	24	25	-	-	-	T	167937620	C	T	167937620	3	4	67	1	0	0	0	0	1	0	0	0	13141	768	27	1	1427	1	RARS	5	167937620	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	9798419	167937620	12977640	404	3766										
C5orf25	0	genome.wustl.edu	37	chr5	175751676	175751676	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctctccatagccgtagaggTggacaggacccccacctgca	11	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	175751676	175751676	T	G	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.2030	p.V677G	1.000	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	314	2	0.63	202	30	12.82	-	-	-	G	175751676	T	G	175751676	3	3	67	1	0	0	0	0	1	0	0	0	2309	1696	59	5	807	5	C5orf25	5	175751676	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7814056	175751676	5163584	405	3767										
CDHR2	0	genome.wustl.edu	37	chr5	176002429	176002429	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgaggatgcagccaaggTgcacgggggacctgtggggt	20	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	176002429	176002429	T	G	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	splice_site	c.768+2	e8+2	0.905	-	-	-	no_errors	CDHR2	HGNC	ENSG00000074276	119	1	0.81	97	15	13.39	-	-	-	G	176002429	T	G	176002429	5	3	67	1	0	0	0	0	0	0	1	0	3148	1710	59	5	800	5	CDHR2	5	176002429	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	250753	176002429	4912831	406	3768										
PDLIM7	0	genome.wustl.edu	37	chr5	176917535	176917535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcacgtgggcagagcgctggTggtgccagtcccggaggcgg	20	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	176917535	176917535	T	G	SNP	PDLIM7	ENST00000355572	human	ensembl	69_37n	-1	known	missense	c.632	p.H211P	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923	97	0	0	59	11	15.71	-	-	-	G	176917535	T	G	176917535	3	3	67	1	0	0	0	0	1	0	0	0	11757	1696	59	5	866	5	PDLIM7	5	176917535	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	915106	176917535	3997725	407	3769										
FAM193B	0	genome.wustl.edu	37	chr5	176951589	176951589	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgcccttctgtggcttcccAcctgaggacacaggctcagg	11	14	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	176951589	176951589	A	C	SNP	FAM193B	ENST00000524677	human	ensembl	69_37n	-1	novel	missense	c.949	p.W317G	0.517	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM193B	HGNC	ENSG00000146067	30	0	0	19	8	28.57	-	-	-	C	176951589	A	C	176951589	3	2	67	1	0	0	0	0	1	0	0	0	5567	146	6	5	587	5	FAM193B	5	176951589	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	34054	176951589	3963671	408	3770										
COL23A1	0	genome.wustl.edu	37	chr5	177669366	177669366	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctccacgctcgctccgatcAcctttctctcctcggggtcc	7	19	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	177669366	177669366	A	C	SNP	COL23A1	ENST00000390654	human	ensembl	69_37n	-1	known	silent	c.1470	p.G490	0.876	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767	127	0	0	129	17	11.56	-	-	-	C	177669366	A	C	177669366	2	2	67	1	0	0	0	0	0	0	0	1	3712	146	6	5		5	COL23A1	5	177669366	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	717777	177669366	3245894	409	3771										
TBC1D9B	0	genome.wustl.edu	37	chr5	179305400	179305400	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctcgttctggaaggcagggTgctcgggcatggagcggtgc	19	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	179305400	179305400	T	G	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.1691	p.H564P	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	97	0	0	54	12	17.91	-	-	-	G	179305400	T	G	179305400	3	3	67	1	0	0	0	0	1	0	0	0	15723	1696	59	5	2113	5	TBC1D9B	5	179305400	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1636034	179305400	1609860	410	3772										
TBC1D9B	0	genome.wustl.edu	37	chr5	179305499	179305499	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctcagcatagtacccggggTgagtcaccatctcattccag	10	13	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	179305499	179305499	T	G	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.1592	p.H531P	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	101	0	0	48	8	14.29	-	-	-	G	179305499	T	G	179305499	3	3	67	1	0	0	0	0	1	0	0	0	15723	1696	59	5	2212	5	TBC1D9B	5	179305499	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	99	179305499	1609761	411	3773										
RASGEF1C	0	genome.wustl.edu	37	chr5	179546420	179546420	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtcgatgaagaactcaatcAcctgggccctctgcttcttc	8	14	4	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	5	179546420	179546420	A	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.833	p.V278G	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	143	0	0	71	16	17.78	-	-	-	C	179546420	A	C	179546420	3	2	67	1	0	0	0	0	1	0	0	0	13154	159	6	5	595	5	RASGEF1C	5	179546420	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	240921	179546420	1368840	412	3774										
PHACTR1	0	genome.wustl.edu	37	chr6	13283673	13283673	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctcagtcaaaggcccacggTggaagagcttcgggaaagaa	14	9	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	13283673	13283673	T	G	SNP	PHACTR1	ENST00000379335	human	ensembl	69_37n	1	known	missense	c.221	p.V74G	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	131	0	0	77	16	17.2	-	-	-	G	13283673	T	G	13283673	3	3	67	1	0	0	0	0	1	0	0	0	11883	1696	59	5	1571	5	PHACTR1	6	13283673	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		13283673	157831394	413	3775										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043737	26043737	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgagatgccggtgtcggggTggacctgcttcagaaccttg	15	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	26043737	26043737	T	G	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.149	p.H50P	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	260	1	0.38	228	33	12.6	-	-	-	G	26043737	T	G	26043737	3	3	67	1	0	0	0	0	1	0	0	0	7192	1696	59	5	235	5	HIST1H2BB	6	26043737	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12760064	26043737	145071330	414	3776										
BTN2A2	0	genome.wustl.edu	37	chr6	26385288	26385288	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taatcccatcctggccatggTgggagaaaacactacattac	8	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	26385288	26385288	T	G	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	missense	c.140	p.V47G	0.949	pfam_Ig_V-set,smart_Ig_sub	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	211	0	0	175	25	12.44	-	-	-	G	26385288	T	G	26385288	3	3	67	1	0	0	0	0	1	0	0	0	1570	1696	59	5	146	5	BTN2A2	6	26385288	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	341551	26385288	144729779	415	3777										
BTN2A1	0	genome.wustl.edu	37	chr6	26459915	26459915	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggagtaccgaggaagaaccAcctttgtgagcaaagacatc	11	9	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	26459915	26459915	A	C	SNP	BTN2A1	ENST00000312541	human	ensembl	69_37n	1	known	missense	c.289	p.T97P	0.971	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A1	HGNC	ENSG00000112763	255	1	0.38	188	23	10.85	-	-	-	C	26459915	A	C	26459915	3	2	67	1	0	0	0	0	1	0	0	0	1569	159	6	5	295	5	BTN2A1	6	26459915	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	74627	26459915	144655152	416	3778										
HIST1H2BL	0	genome.wustl.edu	37	chr6	27775551	27775551	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggggtggacctgcttcagcAccttgtacacgtacacggag	13	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	27775551	27775551	A	C	SNP	HIST1H2BL	ENST00000377401	human	ensembl	69_37n	-1	known	missense	c.134	p.V45G	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BL	HGNC	ENSG00000185130	280	1	0.35	219	29	11.65	-	-	-	C	27775551	A	C	27775551	3	2	67	1	0	0	0	0	1	0	0	0	7202	159	6	5	250	5	HIST1H2BL	6	27775551	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1315636	27775551	143339516	417	3779										
MAS1L	0	genome.wustl.edu	37	chr6	29454652	29454652	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcctttttgttcctccccAcctctggcttatctgctaac	5	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	29454652	29454652	A	C	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.1028	p.V343G	0.005	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	255	1	0.39	257	38	12.75	-	-	-	C	29454652	A	C	29454652	3	2	67	1	0	0	0	0	1	0	0	0	9392	159	6	5	110	5	MAS1L	6	29454652	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1679101	29454652	141660415	418	3780										
MAS1L	0	genome.wustl.edu	37	chr6	29455339	29455339	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacgtcagcagcgaccaggTggaggatgtataccatgtag	13	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	29455339	29455339	T	G	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.341	p.H114P	0.818	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	98	1	1	41	11	21.15	-	-	-	G	29455339	T	G	29455339	3	3	67	1	0	0	0	0	1	0	0	0	9392	1696	59	5	797	5	MAS1L	6	29455339	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	687	29455339	141659728	419	3781										
VARS2	0	genome.wustl.edu	37	chr6	30885526	30885526	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcgactgcctggctgccccAcccccgtgtcttttggcctc	9	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	30885526	30885526	A	C	SNP	VARS2	ENST00000541562	human	ensembl	69_37n	1	known	missense	c.1018	p.T340P	0.045	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS2	HGNC	ENSG00000137411	190	1	0.52	198	34	14.66	-	-	-	C	30885526	A	C	30885526	3	2	67	1	0	0	0	0	1	0	0	0	17221	159	6	5	1056	5	VARS2	6	30885526	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1430187	30885526	140229541	420	3782										
DPCR1	0	genome.wustl.edu	37	chr6	30917697	30917697	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctacagaaaatagagaaacaAcagccaatgagaagaccaca	7	9	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	30917697	30917697	A	C	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	missense	c.1456	p.T486P	0.030	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	394	4	1	286	79	21.64	-	-	-	C	30917697	A	C	30917697	3	2	67	1	0	0	0	0	1	0	0	0	4747	43	2	5	1462	5	DPCR1	6	30917697	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	32171	30917697	140197370	421	3783										
CDSN	0	genome.wustl.edu	37	chr6	31084117	31084117	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgaaggagccggtgcctggTggggagcaggggctctggga	21	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	31084117	31084117	T	G	SNP	CDSN	ENST00000376288	human	ensembl	69_37n	-1	known	silent	c.1275	p.P425	0.005	NULL	NULL	-	no_errors	CDSN	HGNC	ENSG00000204539	129	1	0.76	71	13	15.48	-	-	-	G	31084117	T	G	31084117	2	3	67	1	0	0	0	0	0	0	0	1	3208	1683	59	5		5	CDSN	6	31084117	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	166420	31084117	140030950	422	3784										
POU5F1	0	genome.wustl.edu	37	chr6	31133755	31133755	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcctgtgtatatcccagggTgatcctcttctgcttcagga	11	11	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	31133755	31133755	T	G	SNP	POU5F1	ENST00000259915	human	ensembl	69_37n	-1	known	missense	c.475	p.T159P	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531	336	1	0.29	218	30	12	-	-	-	G	31133755	T	G	31133755	3	3	67	1	0	0	0	0	1	0	0	0	12354	1696	59	5	623	5	POU5F1	6	31133755	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	49638	31133755	139981312	423	3785										
CYP21A2	0	genome.wustl.edu	37	chr6	32008363	32008363	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaccacacggcccagcaggTgactcccgagggttggggat	15	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	32008363	32008363	T	G	SNP	CYP21A2	ENST00000418967	human	ensembl	69_37n	1	known	splice_site	c.1118+2	e8+2	1.000	-	-	-	no_errors	CYP21A2	HGNC	ENSG00000231852	63	0	0	50	10	16.67	-	-	-	G	32008363	T	G	32008363	5	3	67	1	0	0	0	0	0	0	1	0	4184	1710	59	5	2671	5	CYP21A2	6	32008363	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	874608	32008363	139106704	424	3786										
NOTCH4	0	genome.wustl.edu	37	chr6	32187939	32187939	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtccaggtcctggtggcaggTgggccccgaatagccaggct	16	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	32187939	32187939	T	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.1282	p.T428P	1.000	smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	103	1	0.96	56	23	29.11	-	-	-	G	32187939	T	G	32187939	3	3	67	1	0	0	0	0	1	0	0	0	10623	1696	59	5	4825	5	NOTCH4	6	32187939	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	179576	32187939	138927128	425	3787										
COL11A2	0	genome.wustl.edu	37	chr6	33154351	33154351	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaggaggagagatgcctgggTgtcttccctctctggggtgt	16	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	33154351	33154351	T	G	SNP	COL11A2	ENST00000395194	human	ensembl	69_37n	-1	putative	missense	c.851	p.H284P	0.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL11A2	HGNC	ENSG00000204248	251	2	0.78	227	37	13.96	-	-	-	G	33154351	T	G	33154351	3	3	67	1	0	0	0	0	1	0	0	0	3698	1696	59	5	4682	5	COL11A2	6	33154351	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	966412	33154351	137960716	426	3788										
B3GALT4	0	genome.wustl.edu	37	chr6	33246237	33246237	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagcctggaagctggtgggTggctctgacggggaaaggac	19	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	33246237	33246237	T	G	SNP	B3GALT4	ENST00000451237	human	ensembl	69_37n	1	known	silent	c.1041	p.G347	0.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863	199	2	0.99	92	15	14.02	-	-	-	G	33246237	T	G	33246237	2	3	67	1	0	0	0	0	0	0	0	1	1253	1683	59	5		5	B3GALT4	6	33246237	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	91886	33246237	137868830	427	3789										
KIFC1	0	genome.wustl.edu	37	chr6	33374265	33374265	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catggccctgagcaacaaggTgggaatgggagtggggtgag	19	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	33374265	33374265	T	G	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	splice_site	c.1827+2	e8+2	0.995	-	-	-	no_errors	KIFC1	HGNC	ENSG00000237649	88	0	0	42	14	24.56	-	-	-	G	33374265	T	G	33374265	5	3	67	1	0	0	0	0	0	0	1	0	8364	1710	59	5	1859	5	KIFC1	6	33374265	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	128028	33374265	137740802	428	3790										
IP6K3	0	genome.wustl.edu	37	chr6	33694552	33694552	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggagcacaggcgggtcaggTgggcctggtggcattgcagg	20	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	33694552	33694552	T	G	SNP	IP6K3	ENST00000293756	human	ensembl	69_37n	-1	known	missense	c.545	p.H182P	1.000	NULL	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896	102	1	0.96	50	18	26.47	-	-	-	G	33694552	T	G	33694552	3	3	67	1	0	0	0	0	1	0	0	0	7844	1696	59	5	699	5	IP6K3	6	33694552	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	320287	33694552	137420515	429	3791										
ZNF76	0	genome.wustl.edu	37	chr6	35260474	35260474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agacctaccggcagacctccAccttggccatgcacaagcgc	9	17	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	35260474	35260474	A	C	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	1	known	missense	c.1075	p.T359P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029	80	0	0	41	8	16.33	-	-	-	C	35260474	A	C	35260474	3	2	67	1	0	0	0	0	1	0	0	0	18229	159	6	5	1109	5	ZNF76	6	35260474	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1565922	35260474	135854593	430	3792										
C6orf222	0	genome.wustl.edu	37	chr6	36294354	36294354	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaaagctggacttcttgggTggccaggcctctggactgga	15	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	36294354	36294354	T	G	SNP	C6orf222	ENST00000437635	human	ensembl	69_37n	-1	known	silent	c.969	p.P323	0.006	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325	168	1	0.58	212	33	13.47	-	-	-	G	36294354	T	G	36294354	2	3	67	1	0	0	0	0	0	0	0	1	2377	1683	59	5		5	C6orf222	6	36294354	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1033880	36294354	134820713	431	3793										
C6orf89	0	genome.wustl.edu	37	chr6	36882204	36882204	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagaggctccatccactggTgatcaaggtgagcagaagcc	13	10	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	36882204	36882204	T	G	SNP	C6orf89	ENST00000355190	human	ensembl	69_37n	1	known	missense	c.569	p.V190G	1.000	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	152	0	0	86	13	13.13	-	-	-	G	36882204	T	G	36882204	3	3	67	1	0	0	0	0	1	0	0	0	2395	1696	59	5	583	5	C6orf89	6	36882204	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	587850	36882204	134232863	432	3794										
MDGA1	0	genome.wustl.edu	37	chr6	37605979	37605979	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacctccttcccgtcttgcAcctttattgggatccgtctg	7	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	37605979	37605979	A	C	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	splice_site	c.2788+2	e17+2	0.994	-	-	-	no_errors	MDGA1	HGNC	ENSG00000112139	186	1	0.53	228	37	13.81	-	-	-	C	37605979	A	C	37605979	5	2	67	1	0	0	0	0	0	0	1	0	9477	173	6	5	97	5	MDGA1	6	37605979	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	723775	37605979	133509088	433	3795										
KCNK16	0	genome.wustl.edu	37	chr6	39283146	39283146	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctctctggcttcccatggggTgtttggaaaggctcttgaga	13	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	39283146	39283146	T	G	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	silent	c.723	p.T241	0.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	173	0	0	147	19	11.45	-	-	-	G	39283146	T	G	39283146	2	3	67	1	0	0	0	0	0	0	0	1	8117	1683	59	5		5	KCNK16	6	39283146	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1677167	39283146	131831921	434	3796										
FRS3	0	genome.wustl.edu	37	chr6	41744671	41744671	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgggtaccttgaacttggTggggtggttgtctggaacgc	16	7	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	41744671	41744671	T	G	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.55	p.T19P	1.000	smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	327	1	0.3	299	35	10.48	-	-	-	G	41744671	T	G	41744671	3	3	67	1	0	0	0	0	1	0	0	0	6111	1696	59	5	1443	5	FRS3	6	41744671	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2461525	41744671	129370396	435	3797										
PRICKLE4	0	genome.wustl.edu	37	chr6	41751240	41751240	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagaactctggctggccccAccaagaagacagccccaagc	10	16	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	41751240	41751240	A	C	SNP	PRICKLE4	ENST00000335515	human	ensembl	69_37n	1	known	missense	c.29	p.H10P	0.000	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593	177	0	0	118	16	11.76	-	-	-	C	41751240	A	C	41751240	3	2	67	1	0	0	0	0	1	0	0	0	12570	159	6	5	31	5	PRICKLE4	6	41751240	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6569	41751240	129363827	436	3798										
KLC4	0	genome.wustl.edu	37	chr6	43040590	43040590	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctatcagccagacgaaggTggcagagctgcttggggaga	15	10	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	43040590	43040590	T	G	SNP	KLC4	ENST00000259708	human	ensembl	69_37n	1	known	missense	c.1571	p.V524G	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171	271	1	0.36	249	40	13.79	-	-	-	G	43040590	T	G	43040590	3	3	67	1	0	0	0	0	1	0	0	0	8389	1696	59	5	1690	5	KLC4	6	43040590	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1289350	43040590	128074477	437	3799										
PTK7	0	genome.wustl.edu	37	chr6	43127555	43127555	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacttccgccaggcctgggTgccgctgcgctggatgtccc	13	17	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	43127555	43127555	T	G	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	missense	c.2903	p.V968G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	92	0	0	69	19	21.11	-	-	-	G	43127555	T	G	43127555	3	3	67	1	0	0	0	0	1	0	0	0	12846	1696	59	5	2977	5	PTK7	6	43127555	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	86965	43127555	127987512	438	3800										
TJAP1	0	genome.wustl.edu	37	chr6	43472735	43472735	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgagtgagggtgtcccaggTgatccagccagtcccccggc	14	13	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	43472735	43472735	T	G	SNP	TJAP1	ENST00000372445	human	ensembl	69_37n	1	known	silent	c.816	p.G272	0.743	NULL	NULL	-	no_errors	TJAP1	HGNC	ENSG00000137221	61	0	0	36	11	22.92	-	-	-	G	43472735	T	G	43472735	2	3	67	1	0	0	0	0	0	0	0	1	16023	1683	59	5		5	TJAP1	6	43472735	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	345180	43472735	127642332	439	3801										
TMEM63B	0	genome.wustl.edu	37	chr6	44117659	44117659	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcttctcggccctccttcccAccatcgtctactactcagcc	5	20	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	44117659	44117659	A	C	SNP	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	missense	c.1477	p.T493P	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	166	1	0.6	226	42	15.67	-	-	-	C	44117659	A	C	44117659	3	2	67	1	0	0	0	0	1	0	0	0	16286	159	6	5	1535	5	TMEM63B	6	44117659	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	644924	44117659	126997408	440	3802										
TMEM63B	0	genome.wustl.edu	37	chr6	44121568	44121568	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctggctgctcttcttttccAccatgcgcacgggtgaggga	12	12	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	44121568	44121568	A	C	SNP	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	missense	c.2098	p.T700P	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	41	0	0	37	12	24.49	-	-	-	C	44121568	A	C	44121568	3	2	67	1	0	0	0	0	1	0	0	0	16286	159	6	5	2176	5	TMEM63B	6	44121568	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3909	44121568	126993499	441	3803										
HSP90AB1	0	genome.wustl.edu	37	chr6	44218084	44218084	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggcagaggaagagaaaggTgagaaagaagaggaagataa	17	1	0	6			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	44218084	44218084	T	G	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	silent	c.705	p.G235	0.014	pfam_Hsp90,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	120	1	0.82	85	19	18.1	-	-	-	G	44218084	T	G	44218084	2	3	67	1	0	0	0	0	0	0	0	1	7455	1683	59	5		5	HSP90AB1	6	44218084	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	96516	44218084	126896983	442	3804										
NFKBIE	0	genome.wustl.edu	37	chr6	44228253	44228253	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggttggttcttctgaagggTggcaatgtggagacaagcca	15	6	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	44228253	44228253	T	G	SNP	NFKBIE	ENST00000275015	human	ensembl	69_37n	-1	known	missense	c.1132	p.T378P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIE	HGNC	ENSG00000146232	260	1	0.38	274	41	13.02	-	-	-	G	44228253	T	G	44228253	3	3	67	1	0	0	0	0	1	0	0	0	10452	1696	59	5	382	5	NFKBIE	6	44228253	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10169	44228253	126886814	443	3805										
GPR116	0	genome.wustl.edu	37	chr6	46826738	46826738	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atagcacccactgctgtcccAcccccctgtgttgttggcaa	8	16	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	46826738	46826738	A	C	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.2902	p.W968G	0.999	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	135	1	0.73	133	20	13.07	-	-	-	C	46826738	A	C	46826738	3	2	67	1	0	0	0	0	1	0	0	0	6683	159	6	5	1158	5	GPR116	6	46826738	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2598485	46826738	124288329	444	3806										
GPR116	0	genome.wustl.edu	37	chr6	46867794	46867794	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttttgcctcagtgcctcttcAccagctggttcatgttcatg	8	12	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	46867794	46867794	A	C	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.129	p.G43	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	106	1	0.93	167	20	10.7	-	-	-	C	46867794	A	C	46867794	2	2	67	1	0	0	0	0	0	0	0	1	6683	146	6	5		5	GPR116	6	46867794	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	41056	46867794	124247273	445	3807										
BEND6	0	genome.wustl.edu	37	chr6	56857305	56857305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaaagaaaaactaacaaacAcccggaaagaaaacagccga	7	9	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	56857305	56857305	A	C	SNP	BEND6	ENST00000370746	human	ensembl	69_37n	1	known	missense	c.250	p.T84P	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917	300	1	0.33	157	30	15.96	-	-	-	C	56857305	A	C	56857305	3	2	67	1	0	0	0	0	1	0	0	0	1406	159	6	5	256	5	BEND6	6	56857305	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9989511	56857305	114257762	446	3808										
COL9A1	0	genome.wustl.edu	37	chr6	70944526	70944526	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggacaccaggcaggccggTggcaccctgttctccctgca	12	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	70944526	70944526	T	G	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.2230	p.T744P	0.979	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	69	0	0	34	9	20.45	-	-	-	G	70944526	T	G	70944526	3	3	67	1	0	0	0	0	1	0	0	0	3737	1696	59	5	555	5	COL9A1	6	70944526	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	14087221	70944526	100170541	447	3809										
MDN1	0	genome.wustl.edu	37	chr6	90482319	90482319	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgagccaagtattggatggTagaggttttgccagtcccgg							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	90482319	90482319	T	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.2056	p.T686P	0.917	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	200	1	0.5	154	39	20.21	-	-	-	G	90482319	T	G	90482319	3	3	67	1	0	0	0	0	1	0	0	0	9486	1638	57	5	15090	5	MDN1	6	90482319	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	19537793	90482319	80632748	448	3810	31	2								
MDN1	0	genome.wustl.edu	37	chr6	90482325	90482325	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caagtattggatggtagaggTtttgccagtcccggtctctc							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	90482325	90482325	T	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.2050	p.T684P	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	202	0	0	157	28	15.05	-	-	-	G	90482325	T	G	90482325	3	3	67	1	0	0	0	0	1	0	0	0	9486	1725	60	5	15096	5	MDN1	6	90482325	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6	90482325	80632742	449	3811	31	2								
CASP8AP2	0	genome.wustl.edu	37	chr6	90572238	90572238	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaagacttaagtactggctgTggtgatggtgaaccaaggat	13	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	90572238	90572238	T	G	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	118	0	0	103	16	13.45	-	-	-	G	90572238	T	G	90572238	1	3	67	0	1	0	0	0	0	0	0	0	2703	1702	59	5		5	CASP8AP2	6	90572238	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	89913	90572238	80542829	450	3812										
SIM1	0	genome.wustl.edu	37	chr6	100895273	100895273	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctgtagtacttggtggtcAcctgtcccttcaccagcact	8	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	100895273	100895273	A	C	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.869	p.V290G	1.000	pfam_PAS_fold_3	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	156	1	0.63	104	22	17.32	-	-	-	C	100895273	A	C	100895273	3	2	67	1	0	0	0	0	1	0	0	0	14412	159	6	5	1447	5	SIM1	6	100895273	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10323035	100895273	70219794	451	3813										
PDSS2	0	genome.wustl.edu	37	chr6	107780457	107780457	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccgaggctccaagataacgTggcaagtgcaacagcagctg	12	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	107780457	107780457	T	G	SNP	PDSS2	ENST00000369037	human	ensembl	69_37n	-1	known	silent	c.33	p.P11	0.287	NULL	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS2	HGNC	ENSG00000164494	66	0	0	23	7	23.33	-	-	-	G	107780457	T	G	107780457	2	3	67	1	0	0	0	0	0	0	0	1	11767	1683	59	5		5	PDSS2	6	107780457	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6885184	107780457	63334610	452	3814										
GOPC	0	genome.wustl.edu	37	chr6	117894639	117894639	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcaaacatacatggcctggTggtgcttgcattggtcgttt	12	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	117894639	117894639	T	G	SNP	GOPC	ENST00000368498	human	ensembl	69_37n	-1	known	silent	c.807	p.P269	0.032	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932	181	1	0.55	208	34	13.99	-	-	-	G	117894639	T	G	117894639	2	3	67	1	0	0	0	0	0	0	0	1	6622	1683	59	5		5	GOPC	6	117894639	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10114182	117894639	53220428	453	3815										
TRDN	0	genome.wustl.edu	37	chr6	123786109	123786109	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgttctgtcggtaagggaggTggaatggctgggctttgtcc	17	6	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	123786109	123786109	T	G	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	silent	c.873	p.P291	0.999	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	352	3	0.85	374	46	10.93	-	-	-	G	123786109	T	G	123786109	2	3	67	1	0	0	0	0	0	0	0	1	16564	1683	59	5		5	TRDN	6	123786109	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5891470	123786109	47328958	454	3816										
LAMA2	0	genome.wustl.edu	37	chr6	129714318	129714318	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaagttgatgatgcttgggAccttttgagagaagccacag	12	7	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	129714318	129714318	A	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.5363	p.D1788A	1.000	pfam_Laminin_I,superfamily_t-SNARE	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	170	1	0.58	125	26	17.11	-	-	-	C	129714318	A	C	129714318	3	2	67	1	0	0	0	0	1	0	0	0	8660	275	10	5	5509	5	LAMA2	6	129714318	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5928209	129714318	41400749	455	3817										
TAAR8	0	genome.wustl.edu	37	chr6	132874341	132874341	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgctgtgttctacacaggTgtcaatgatgatgggctgga	15	6	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	132874341	132874341	T	G	SNP	TAAR8	ENST00000275200	human	ensembl	69_37n	1	known	silent	c.510	p.G170	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAAR8	HGNC	ENSG00000146385	289	0	0	277	32	10.26	-	-	-	G	132874341	T	G	132874341	2	3	67	1	0	0	0	0	0	0	0	1	15585	1683	59	5		5	TAAR8	6	132874341	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3160023	132874341	38240726	456	3818										
MAP3K5	0	genome.wustl.edu	37	chr6	137041664	137041664	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatgctgaaactttctctcAccccaaggtggtaaaacaag	7	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	137041664	137041664	A	C	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.512	p.V171G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	162	1	0.61	131	29	18.12	-	-	-	C	137041664	A	C	137041664	3	2	67	1	0	0	0	0	1	0	0	0	9324	159	6	5	3728	5	MAP3K5	6	137041664	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4167323	137041664	34073403	457	3819										
CCDC28A	0	genome.wustl.edu	37	chr6	139106480	139106480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcctgaggataagagaaaaAcagccagtgactccaatctg	9	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	139106480	139106480	A	C	SNP	CCDC28A	ENST00000332797	human	ensembl	69_37n	1	known	missense	c.709	p.T237P	0.278	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862	171	0	0	104	24	18.75	-	-	-	C	139106480	A	C	139106480	3	2	67	1	0	0	0	0	1	0	0	0	2828	43	2	5	723	5	CCDC28A	6	139106480	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2064816	139106480	32008587	458	3820										
SYNE1	0	genome.wustl.edu	37	chr6	152671846	152671846	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accagttccaaaagagcttcAcccttctctctcactgactt	4	15	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	152671846	152671846	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.11640	p.G3880	0.406	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	183	1	0.54	202	28	12.12	-	-	-	C	152671846	A	C	152671846	2	2	67	1	0	0	0	0	0	0	0	1	15537	146	6	5		5	SYNE1	6	152671846	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13565366	152671846	18443221	459	3821										
SNX9	0	genome.wustl.edu	37	chr6	158349702	158349702	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgaaggagctgctgacggTggggcaggagcactggaagc	19	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	158349702	158349702	T	G	SNP	SNX9	ENST00000392185	human	ensembl	69_37n	1	known	missense	c.1256	p.V419G	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX9	HGNC	ENSG00000130340	105	1	0.94	40	13	24.53	-	-	-	G	158349702	T	G	158349702	3	3	67	1	0	0	0	0	1	0	0	0	14998	1696	59	5	1302	5	SNX9	6	158349702	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5677856	158349702	12765365	460	3822										
TULP4	0	genome.wustl.edu	37	chr6	158870056	158870056	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcacggccgatgggcaggTgattgtcatggattgccacg	16	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	158870056	158870056	T	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.572	p.V191G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	135	0	0	76	21	21.65	-	-	-	G	158870056	T	G	158870056	3	3	67	1	0	0	0	0	1	0	0	0	16873	1696	59	5	586	5	TULP4	6	158870056	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	520354	158870056	12245011	461	3823										
TULP4	0	genome.wustl.edu	37	chr6	158924082	158924082	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagtgggaccccatgctgggTgaggatgtttgggttcctca	15	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	158924082	158924082	T	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.3387	p.G1129	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	44	0	0	39	6	13.33	-	-	-	G	158924082	T	G	158924082	2	3	67	1	0	0	0	0	0	0	0	1	16873	1683	59	5		5	TULP4	6	158924082	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	54026	158924082	12190985	462	3824										
RSPH3	0	genome.wustl.edu	37	chr6	159420633	159420633	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagcttggctttgaagcaggTgggcgctaaggtgttgtggg	19	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	159420633	159420633	T	G	SNP	RSPH3	ENST00000252655	human	ensembl	69_37n	-1	known	missense	c.376	p.T126P	0.011	NULL	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363	128	1	0.77	112	25	18.25	-	-	-	G	159420633	T	G	159420633	3	3	67	1	0	0	0	0	1	0	0	0	13791	1696	59	5	1338	5	RSPH3	6	159420633	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	496551	159420633	11694434	463	3825										
RSPH3	0	genome.wustl.edu	37	chr6	159420645	159420645	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagcaggtgggcgctaaggTgttgtgggacccggagagat	19	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	159420645	159420645	T	G	SNP	RSPH3	ENST00000252655	human	ensembl	69_37n	-1	known	missense	c.364	p.T122P	0.000	NULL	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363	135	0	0	117	20	14.49	-	-	-	G	159420645	T	G	159420645	3	3	67	1	0	0	0	0	1	0	0	0	13791	1696	59	5	1350	5	RSPH3	6	159420645	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12	159420645	11694422	464	3826										
WDR27	0	genome.wustl.edu	37	chr6	170068160	170068160	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgcagtcaccgggcccaggTggccctgcagctcggcccga	14	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	6	170068160	170068160	T	G	SNP	WDR27	ENST00000448612	human	ensembl	69_37n	-1	known	missense	c.578	p.H193P	0.893	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR27	HGNC	ENSG00000184465	166	1	0.59	164	29	14.95	-	-	-	G	170068160	T	G	170068160	3	3	67	1	0	0	0	0	1	0	0	0	17381	1696	59	5	2079	5	WDR27	6	170068160	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10647515	170068160	1046907	465	3827										
MICALL2	0	genome.wustl.edu	37	chr7	1477592	1477592	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaatgagccagaaccagtccAccatgaggctatcctcagcg	10	13	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	1477592	1477592	A	C	SNP	MICALL2	ENST00000297508	human	ensembl	69_37n	-1	known	missense	c.2336	p.V779G	1.000	pfam_DUF3585	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL2	HGNC	ENSG00000164877	57	0	0	62	9	12.68	-	-	-	C	1477592	A	C	1477592	3	2	67	1	0	0	0	0	1	0	0	0	9645	159	6	5	398	5	MICALL2	7	1477592	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		1477592	157661071	466	3828										
INTS1	0	genome.wustl.edu	37	chr7	1510191	1510191	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgggacgggccggggcttggAggggggtcggctgccacagg	23	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	1510191	1510191	A	G	SNP	INTS1	ENST00000493446	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INTS1	HGNC	ENSG00000164880	38	0	0	24	11	31.43	-	-	-	G	1510191	A	G	1510191	1	3	67	0	1	0	0	0	0	0	0	0	7829	319	11	5		5	INTS1	7	1510191	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	32599	1510191	157628472	467	3829										
MAD1L1	0	genome.wustl.edu	37	chr7	1937861	1937861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agatgaggcagtcgcctgggTgctcggcgtacagcgaggtc	17	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	1937861	1937861	T	G	SNP	MAD1L1	ENST00000265854	human	ensembl	69_37n	-1	known	missense	c.1973	p.H658P	1.000	pfam_MAD	pfam_MAD	-	no_errors	MAD1L1	HGNC	ENSG00000002822	218	2	0.91	121	33	21.43	-	-	-	G	1937861	T	G	1937861	3	3	67	1	0	0	0	0	1	0	0	0	9214	1696	59	5	191	5	MAD1L1	7	1937861	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	427670	1937861	157200802	468	3830										
SDK1	0	genome.wustl.edu	37	chr7	4150296	4150296	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtgtctccctctgcacaggTgggagctatcggcgacgagg	15	11	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	4150296	4150296	T	G	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3326	p.V1109G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	186	1	0.53	89	22	19.82	-	-	-	G	4150296	T	G	4150296	3	3	67	1	0	0	0	0	1	0	0	0	14056	1710	59	5	3416	5	SDK1	7	4150296	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2212435	4150296	154988367	469	3831										
SDK1	0	genome.wustl.edu	37	chr7	4259753	4259753	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgcaggggtgagcaaggTggtgaccgtggaagtgagag	21	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	4259753	4259753	T	G	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.5552	p.V1851G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	146	1	0.68	88	24	21.43	-	-	-	G	4259753	T	G	4259753	3	3	67	1	0	0	0	0	1	0	0	0	14056	1696	59	5	5706	5	SDK1	7	4259753	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	109457	4259753	154878910	470	3832										
COL28A1	0	genome.wustl.edu	37	chr7	7400063	7400063	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgagcagtggcctgggggTggtggtggcctcagatgagg	21	7	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	7400063	7400063	T	G	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	missense	c.3163	p.T1055P	0.000	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	227	2	0.86	127	28	17.83	-	-	-	G	7400063	T	G	7400063	3	3	67	1	0	0	0	0	1	0	0	0	3716	1696	59	5	222	5	COL28A1	7	7400063	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3140310	7400063	151738600	471	3833										
TOMM7	0	genome.wustl.edu	37	chr7	22862394	22862394	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcctctttgctcagcttcAccatggcgacggccgtgtgg	13	13	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	22862394	22862394	A	C	SNP	TOMM7	ENST00000358435	human	ensembl	69_37n	-1	known	missense	c.5	p.V2G	1.000	NULL	pfam_Tom7	-	no_errors	TOMM7	HGNC	ENSG00000196683	166	0	0	94	26	21.49	-	-	-	C	22862394	A	C	22862394	3	2	67	1	0	0	0	0	1	0	0	0	16457	159	6	5	174	5	TOMM7	7	22862394	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	15462331	22862394	136276269	472	3834										
DFNA5	0	genome.wustl.edu	37	chr7	24745879	24745879	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctcggggcccggacacccAccctgtaagctgcaccccac	9	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	24745879	24745879	A	C	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	silent	c.1107	p.G369	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	58	0	0	56	19	25	-	-	-	C	24745879	A	C	24745879	2	2	67	1	0	0	0	0	0	0	0	1	4490	146	6	5		5	DFNA5	7	24745879	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1883485	24745879	134392784	473	3835										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26232150	26232150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaagctcagtatcggctccTcccaccataacccccacttc	5	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	26232150	26232150	T	C	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.1048	p.R350G	1.000	NULL	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	225	0	0	240	43	15.19	-	-	-	C	26232150	T	C	26232150	3	2	67	1	0	0	0	0	1	0	0	0	7310	1550	54	5	17	5	HNRNPA2B1	7	26232150	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1486271	26232150	132906513	474	3836										
JAZF1	0	genome.wustl.edu	37	chr7	28220124	28220124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcgatgaggtcggccagggTggggaagtggagtccgcagc	19	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	28220124	28220124	T	G	SNP	JAZF1	ENST00000283928	human	ensembl	69_37n	-1	known	missense	c.73	p.T25P	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	JAZF1	HGNC	ENSG00000153814	38	0	0	36	14	27.45	-	-	-	G	28220124	T	G	28220124	3	3	67	1	0	0	0	0	1	0	0	0	8000	1696	59	5	678	5	JAZF1	7	28220124	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1987974	28220124	130918539	475	3837										
CREB5	0	genome.wustl.edu	37	chr7	28844033	28844033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctcaccctcaaccccatcAccagcagaaccatccacatc	2	21	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	28844033	28844033	A	C	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	missense	c.920	p.H307P	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	523	1	0.19	254	35	12.07	-	-	-	C	28844033	A	C	28844033	3	2	67	1	0	0	0	0	1	0	0	0	3890	159	6	5	1001	5	CREB5	7	28844033	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	623909	28844033	130294630	476	3838										
CREB5	0	genome.wustl.edu	37	chr7	28844069	28844069	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acatcaccactcccattcccAccttcatgcacacccagcac	2	21	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	28844069	28844069	A	C	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	missense	c.956	p.H319P	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	521	1	0.19	191	57	22.89	-	-	-	C	28844069	A	C	28844069	3	2	67	1	0	0	0	0	1	0	0	0	3890	159	6	5	1037	5	CREB5	7	28844069	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	36	28844069	130294594	477	3839										
GHRHR	0	genome.wustl.edu	37	chr7	31009536	31009536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctgagccctttccaccttAccctgtggcctgccctgtgc	9	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	31009536	31009536	A	C	SNP	GHRHR	ENST00000326139	human	ensembl	69_37n	1	known	missense	c.323	p.Y108S	0.846	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt_1	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128	146	1	0.67	100	23	18.55	-	-	-	C	31009536	A	C	31009536	3	2	67	1	0	0	0	0	1	0	0	0	6425	391	14	5	337	5	GHRHR	7	31009536	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2165467	31009536	128129127	478	3840										
EEPD1	0	genome.wustl.edu	37	chr7	36327282	36327282	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgacccttgttaaccttcAcctggcagccctgaccctcc	6	19	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	36327282	36327282	A	C	SNP	EEPD1	ENST00000242108	human	ensembl	69_37n	1	known	missense	c.1211	p.H404P	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	105	1	0.93	95	21	18.1	-	-	-	C	36327282	A	C	36327282	3	2	67	1	0	0	0	0	1	0	0	0	4967	159	6	5	1229	5	EEPD1	7	36327282	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5317746	36327282	122811381	479	3841										
AEBP1	0	genome.wustl.edu	37	chr7	44146306	44146306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggagaagccacctaaggccAccaagaagcccaaggagaag	12	11	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	44146306	44146306	A	C	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.415	p.T139P	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	440	1	0.22	171	26	13.13	-	-	-	C	44146306	A	C	44146306	3	2	67	1	0	0	0	0	1	0	0	0	349	159	6	5	421	5	AEBP1	7	44146306	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7819024	44146306	114992357	480	3842										
AEBP1	0	genome.wustl.edu	37	chr7	44146362	44146362	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagaagcccaaagagaagccAcccaaggccaccaagaagcc	9	14	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	44146362	44146362	A	C	SNP	AEBP1	ENST00000455443	human	ensembl	69_37n	1	novel	missense	c.343	p.T115P	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AEBP1	HGNC	ENSG00000106624	371	3	0.8	136	16	10.53	-	-	-	C	44146362	A	C	44146362	3	2	67	1	0	0	0	0	1	0	0	0	349	146	6	5	477	5	AEBP1	7	44146362	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	56	44146362	114992301	481	3843										
AEBP1	0	genome.wustl.edu	37	chr7	44151651	44151651	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgaggtggcagcgcagatggTgggttgaagggtgaggctgg	22	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	44151651	44151651	T	G	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	splice_site	c.2037+2	e16+2	1.000	-	-	-	no_errors	AEBP1	HGNC	ENSG00000106624	86	0	0	36	9	19.57	-	-	-	G	44151651	T	G	44151651	5	3	67	1	0	0	0	0	0	0	1	0	349	1710	59	5	2101	5	AEBP1	7	44151651	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5289	44151651	114987012	482	3844										
GCK	0	genome.wustl.edu	37	chr7	44190553	44190553	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgcccctccacccggcccAccttatcgatgtcttcgtgc	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	44190553	44190553	A	C	SNP	GCK	ENST00000345378	human	ensembl	69_37n	-1	known	splice_site	c.486+2	e4+2	1.000	-	-	-	no_errors	GCK	HGNC	ENSG00000106633	102	0	0	127	18	12.33	-	-	-	C	44190553	A	C	44190553	5	2	67	1	0	0	0	0	0	0	1	0	6343	173	6	5	940	5	GCK	7	44190553	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	38902	44190553	114948110	483	3845										
OGDH	0	genome.wustl.edu	37	chr7	44733574	44733574	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcggccgagtggaggagcAccttccacaaggacgtggtt	16	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	44733574	44733574	A	C	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.1486	p.T496P	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	206	1	0.48	77	13	14.44	-	-	-	C	44733574	A	C	44733574	3	2	67	1	0	0	0	0	1	0	0	0	10912	159	6	5	1697	5	OGDH	7	44733574	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	543021	44733574	114405089	484	3846										
TBRG4	0	genome.wustl.edu	37	chr7	45141972	45141972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attggatgtgaaattcagggTggaggacggcttgcagctct	15	6	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	45141972	45141972	T	G	SNP	TBRG4	ENST00000258770	human	ensembl	69_37n	-1	known	missense	c.1295	p.H432P	0.000	pfam_FAST_Leu-rich	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	TBRG4	HGNC	ENSG00000136270	118	0	0	80	17	17.53	-	-	-	G	45141972	T	G	45141972	3	3	67	1	0	0	0	0	1	0	0	0	15744	1696	59	5	620	5	TBRG4	7	45141972	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	408398	45141972	113996691	485	3847										
DDC	0	genome.wustl.edu	37	chr7	50547559	50547559	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttaagtctgttctctttttcAccctggttttagagaacaaa	6	8	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	50547559	50547559	A	C	SNP	DDC	ENST00000357936	human	ensembl	69_37n	-1	known	missense	c.947	p.V316G	1.000	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437	224	0	0	188	24	11.32	-	-	-	C	50547559	A	C	50547559	3	2	67	1	0	0	0	0	1	0	0	0	4356	159	6	5	515	5	DDC	7	50547559	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5405587	50547559	108591104	486	3848										
AUTS2	0	genome.wustl.edu	37	chr7	70231288	70231288	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcccccacgccatcccacccAccgccatcatgccgacgcca	5	24	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	70231288	70231288	A	C	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	missense	c.1657	p.T553P	0.993	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	424	4	0.92	345	62	15.09	-	-	-	C	70231288	A	C	70231288	3	2	67	1	0	0	0	0	1	0	0	0	1229	159	6	5	1836	5	AUTS2	7	70231288	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	19683729	70231288	88907375	487	3849										
TRIM74	0	genome.wustl.edu	37	chr7	72436310	72436310	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcatgcggctgcagacggTggagacgggcgtgaccgggt	18	10	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	72436310	72436310	T	G	SNP	TRIM74	ENST00000285805	human	ensembl	69_37n	-1	known	missense	c.379	p.T127P	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM74	HGNC	ENSG00000155428	33	0	0	13	6	31.58	-	-	-	G	72436310	T	G	72436310	3	3	67	1	0	0	0	0	1	0	0	0	16643	1711	59	5		5	TRIM74	7	72436310	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2205022	72436310	86702353	488	3850										
NSUN5	0	genome.wustl.edu	37	chr7	72717683	72717683	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccggaggcagtgctcggcAcccgggaacgtgctcaggcc	16	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	72717683	72717683	A	C	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.1200	p.G400	0.001	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	118	0	0	88	17	16.19	-	-	-	C	72717683	A	C	72717683	2	2	67	1	0	0	0	0	0	0	0	1	10754	146	6	5		5	NSUN5	7	72717683	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	281373	72717683	86420980	489	3851										
TRIM50	0	genome.wustl.edu	37	chr7	72738436	72738436	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgtgaccgggtggtgttggTgggagcccagcagaccgcag	19	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	72738436	72738436	T	G	SNP	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	missense	c.350	p.H117P	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	101	1	0.98	40	14	25.45	-	-	-	G	72738436	T	G	72738436	3	3	67	1	0	0	0	0	1	0	0	0	16622	1696	59	5	1137	5	TRIM50	7	72738436	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20753	72738436	86400227	490	3852										
STX1A	0	genome.wustl.edu	37	chr7	73114731	73114731	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagtggagtggcagtttgggTggcttctaggcgaagatgcc	18	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	73114731	73114731	T	G	SNP	STX1A	ENST00000480126	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STX1A	HGNC	ENSG00000106089	94	0	0	52	20	27.78	-	-	-	G	73114731	T	G	73114731	1	3	67	0	1	0	0	0	0	0	0	0	15434	1711	59	5		5	STX1A	7	73114731	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	376295	73114731	86023932	491	3853										
ABHD11	0	genome.wustl.edu	37	chr7	73152301	73152301	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagggctggcctggctgggTggcaatctcggagaatgcca	17	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	73152301	73152301	T	G	SNP	ABHD11	ENST00000468998	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABHD11	HGNC	ENSG00000106077	104	1	0.93	49	20	28.99	-	-	-	G	73152301	T	G	73152301	1	3	67	0	1	0	0	0	0	0	0	0	75	1696	59	5		5	ABHD11	7	73152301	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	37570	73152301	85986362	492	3854										
WBSCR28	0	genome.wustl.edu	37	chr7	73280043	73280043	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccacctgcctggcctcccAcctgctgcaggctgcctttg	10	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	73280043	73280043	A	C	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	missense	c.638	p.H213P	1.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	128	1	0.76	91	33	26.61	-	-	-	C	73280043	A	C	73280043	3	2	67	1	0	0	0	0	1	0	0	0	17364	159	6	5	648	5	WBSCR28	7	73280043	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	127742	73280043	85858620	493	3855										
HIP1	0	genome.wustl.edu	37	chr7	75183428	75183428	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacagtcggcaggctcaggTggggctctgaggcaggtggt	18	9	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	75183428	75183428	T	G	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	silent	c.2142	p.P714	0.000	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	128	1	0.76	81	18	18.18	-	-	-	G	75183428	T	G	75183428	2	3	67	1	0	0	0	0	0	0	0	1	7165	1683	59	5		5	HIP1	7	75183428	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1903385	75183428	83955235	494	3856										
PCLO	0	genome.wustl.edu	37	chr7	82580503	82580503	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taggcattggctggctatggTgcatggcaggtaatgaagtc	15	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	82580503	82580503	T	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.9401	p.H3134P	0.901	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	98	0	0	73	16	17.98	-	-	-	G	82580503	T	G	82580503	3	3	67	1	0	0	0	0	1	0	0	0	11656	1696	59	5	6124	5	PCLO	7	82580503	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7397075	82580503	76558160	495	3857										
DLX5	0	genome.wustl.edu	37	chr7	96650195	96650195	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggactggttggaggtcggAgggtgggcatgagggtggtg	25	3	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	96650195	96650195	A	G	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	silent	c.723	p.P241	1.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	107	0	0	123	24	16.33	-	-	-	G	96650195	A	G	96650195	2	3	67	1	0	0	0	0	0	0	0	1	4610	291	11	5		5	DLX5	7	96650195	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14069692	96650195	62488468	496	3858										
TAF6	0	genome.wustl.edu	37	chr7	99711771	99711771	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcccatggattcagccaccAccttcatggactccgagggc	10	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	99711771	99711771	A	C	SNP	TAF6	ENST00000344095	human	ensembl	69_37n	-1	known	missense	c.62	p.V21G	1.000	pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_TAF_TATA-bd	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290	141	1	0.7	106	18	14.52	-	-	-	C	99711771	A	C	99711771	3	2	67	1	0	0	0	0	1	0	0	0	15622	159	6	5	2027	5	TAF6	7	99711771	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3061576	99711771	59426892	497	3859										
GATS	0	genome.wustl.edu	37	chr7	99820290	99820290	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgtcggggtccaggctggTgacacagaacctgttgctcg	15	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	99820290	99820290	T	G	SNP	GATS	ENST00000328453	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GATS	Clone_based_vega_gene	ENSG00000239521	332	2	0.6	302	43	12.46	-	-	-	G	99820290	T	G	99820290	1	3	67	0	1	0	0	0	0	0	0	0	6314	1711	59	5		5	GATS	7	99820290	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	108519	99820290	59318373	498	3860										
PILRB	0	genome.wustl.edu	37	chr7	99956696	99956696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggggaccaaactcaccatcAcccagggtgagtccagctgc	11	14	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	99956696	99956696	A	C	SNP	PILRB	ENST00000448382	human	ensembl	69_37n	1	known	missense	c.605	p.H202P	0.010	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716	105	1	0.93	40	16	28.57	-	-	-	C	99956696	A	C	99956696	3	2	67	1	0	0	0	0	1	0	0	0	12000	159	6	5	454	5	PILRB	7	99956696	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	136406	99956696	59181967	499	3861										
PILRA	0	genome.wustl.edu	37	chr7	99997475	99997475	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acccagagcacctcccagccAccgtcccctcaagagccccc	6	23	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	99997475	99997475	A	C	SNP	PILRA	ENST00000198536	human	ensembl	69_37n	1	known	missense	c.857	p.H286P	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PILRA	HGNC	ENSG00000085514	172	0	0	145	23	13.69	-	-	-	C	99997475	A	C	99997475	3	2	67	1	0	0	0	0	1	0	0	0	11999	159	6	5	883	5	PILRA	7	99997475	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	40779	99997475	59141188	500	3862										
FBXO24	0	genome.wustl.edu	37	chr7	100190493	100190493	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgcaggaagtggtgggtaccAccagcagccgggcctgtgac	16	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	100190493	100190493	A	C	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	missense	c.760	p.T254P	0.043	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	195	1	0.51	79	17	17.71	-	-	-	C	100190493	A	C	100190493	3	2	67	1	0	0	0	0	1	0	0	0	5781	159	6	5	821	5	FBXO24	7	100190493	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	193018	100190493	58948170	501	3863										
TFR2	0	genome.wustl.edu	37	chr7	100225367	100225367	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccctacccccccaacttacAcctcagcatcccagctggga	5	20	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	100225367	100225367	A	C	SNP	TFR2	ENST00000223051	human	ensembl	69_37n	-1	known	missense	c.1682	p.V561G	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327	92	0	0	78	17	17.89	-	-	-	C	100225367	A	C	100225367	3	2	67	1	0	0	0	0	1	0	0	0	15906	173	6	5	743	5	TFR2	7	100225367	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	34874	100225367	58913296	502	3864										
ZAN	0	genome.wustl.edu	37	chr7	100350750	100350750	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccaccccatcccagccccAcagccactgggctggcagcc	10	21	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	100350750	100350750	A	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.3022	p.T1008P	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	412	4	0.96	320	94	22.65	-	-	-	C	100350750	A	C	100350750	3	2	67	1	0	0	0	0	1	0	0	0	17610	159	6	5	3072	5	ZAN	7	100350750	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	125383	100350750	58787913	503	3865										
MUC17	0	genome.wustl.edu	37	chr7	100676639	100676639	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccagttctgaggctagcAccctttcaacaactcctgtt	8	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	100676639	100676639	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.1942	p.T648P	0.005	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	144	0	0	191	25	11.57	-	-	-	C	100676639	A	C	100676639	3	2	67	1	0	0	0	0	1	0	0	0	10046	159	6	5	1952	5	MUC17	7	100676639	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	325889	100676639	58462024	504	3866										
MYL10	0	genome.wustl.edu	37	chr7	101266275	101266275	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccggctgctggctcacccAcccagcgcggcaaaggtgtc	12	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	101266275	101266275	A	C	SNP	MYL10	ENST00000223167	human	ensembl	69_37n	-1	known	splice_site	c.349+2	e4+2	1.000	-	-	-	no_errors	MYL10	HGNC	ENSG00000106436	66	0	0	57	14	19.18	-	-	-	C	101266275	A	C	101266275	5	2	67	1	0	0	0	0	0	0	1	0	10116	173	6	5	349	5	MYL10	7	101266275	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	589636	101266275	57872388	505	3867										
ARMC10	0	genome.wustl.edu	37	chr7	102727368	102727368	+	Frame_Shift_Del	DEL	G	G	-													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacagaagagggagggacctGaactagccaataagaggtac							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	102727368	102727368	G	-	DEL	ARMC10	ENST00000323735	human	ensembl	69_37n	1	known	frame_shift_del	c.581	p.*194fs	0.000	NULL	pfam_ARM-rpt_dom,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold	-	no_errors	ARMC10	HGNC	ENSG00000170632	14	0	0	3	2	33.33	-	-	-	-	102727368	G	-	102727368	7	5	67	1	0	1	0	1	0	0	0	0	954	1305	45	0		0	ARMC10	7	102727368	Frame_Shift_Del	DEL	G	TCGA-A2-A0T5-01A-21D-A099-09	1461093	102727368	56411295	506	3868										
PRKAR2B	0	genome.wustl.edu	37	chr7	106786855	106786855	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggccttaatgtacaatacAcccagagcagctacaatcac	6	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	106786855	106786855	A	C	SNP	PRKAR2B	ENST00000265717	human	ensembl	69_37n	1	known	silent	c.690	p.T230	0.997	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249	184	0	0	218	37	14.45	-	-	-	C	106786855	A	C	106786855	2	2	67	1	0	0	0	0	0	0	0	1	12587	146	6	5		5	PRKAR2B	7	106786855	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4059487	106786855	52351808	507	3869										
NRCAM	0	genome.wustl.edu	37	chr7	107800919	107800919	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccctgagttgcaatatccAcctgccggcttgccatcgct	9	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	107800919	107800919	A	C	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.3485	p.V1162G	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	159	1	0.62	128	25	16.23	-	-	-	C	107800919	A	C	107800919	3	2	67	1	0	0	0	0	1	0	0	0	10717	159	6	5	471	5	NRCAM	7	107800919	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1014064	107800919	51337744	508	3870										
AASS	0	genome.wustl.edu	37	chr7	121717922	121717922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cattttggctgccatggcggTgggtaaccccacggttttag	13	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	121717922	121717922	T	G	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	missense	c.2632	p.T878P	0.859	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	132	0	0	80	30	27.03	-	-	-	G	121717922	T	G	121717922	3	3	67	1	0	0	0	0	1	0	0	0	24	1696	59	5	156	5	AASS	7	121717922	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	13917003	121717922	37420741	509	3871										
GCC1	0	genome.wustl.edu	37	chr7	127224901	127224901	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcatcttctaccccaaactcAcccttggtgctggtgagact	7	14	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	127224901	127224901	A	C	SNP	GCC1	ENST00000321407	human	ensembl	69_37n	-1	known	silent	c.336	p.G112	0.995	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562	123	1	0.79	74	21	21.88	-	-	-	C	127224901	A	C	127224901	2	2	67	1	0	0	0	0	0	0	0	1	6335	146	6	5		5	GCC1	7	127224901	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5506979	127224901	31913762	510	3872										
CALU	0	genome.wustl.edu	37	chr7	128394491	128394491	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaggagtataaaaatgccAcctacggctacgttttaggt	12	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	128394491	128394491	A	C	SNP	CALU	ENST00000249364	human	ensembl	69_37n	1	known	missense	c.397	p.T133P	1.000	pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALU	HGNC	ENSG00000128595	175	1	0.57	129	18	12.24	-	-	-	C	128394491	A	C	128394491	3	2	67	1	0	0	0	0	1	0	0	0	2619	159	6	5	403	5	CALU	7	128394491	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1169590	128394491	30744172	511	3873										
PODXL	0	genome.wustl.edu	37	chr7	131196049	131196049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcactggatacaccaagggTggtcgccttgaccgaggcca	13	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	131196049	131196049	T	G	SNP	PODXL	ENST00000541194	human	ensembl	69_37n	-1	known	missense	c.250	p.T84P	0.000	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	354	3	0.84	336	43	11.23	-	-	-	G	131196049	T	G	131196049	3	3	67	1	0	0	0	0	1	0	0	0	12254	1696	59	5	1464	5	PODXL	7	131196049	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2801558	131196049	27942614	512	3874										
PLXNA4	0	genome.wustl.edu	37	chr7	131870148	131870148	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtggatcttggccctgtccAcctgcaccgacaccttcatc	9	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	131870148	131870148	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.3068	p.V1023G	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	146	0	0	120	18	13.04	-	-	-	C	131870148	A	C	131870148	3	2	67	1	0	0	0	0	1	0	0	0	12196	159	6	5	2684	5	PLXNA4	7	131870148	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	674099	131870148	27268515	513	3875										
EXOC4	0	genome.wustl.edu	37	chr7	132937878	132937878	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggcggcagaagcagctggTgggaaatacagaagcacagt	15	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	132937878	132937878	T	G	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	silent	c.21	p.G7	0.997	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	161	1	0.61	88	21	19.09	-	-	-	G	132937878	T	G	132937878	2	3	67	1	0	0	0	0	0	0	0	1	5342	1683	59	5		5	EXOC4	7	132937878	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1067730	132937878	26200785	514	3876										
KIAA1549	0	genome.wustl.edu	37	chr7	138603681	138603681	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgaaaagctgaccgaaaggTgtggaaatgactggcggact	15	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	138603681	138603681	T	G	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.691	p.T231P	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	235	0	0	158	20	11.17	-	-	-	G	138603681	T	G	138603681	3	3	67	1	0	0	0	0	1	0	0	0	8296	1696	59	5	5237	5	KIAA1549	7	138603681	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5665803	138603681	20534982	515	3877										
ADCK2	0	genome.wustl.edu	37	chr7	140374485	140374485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attggcagccgagtcctgggAgttttgccaggcatcaagtg	14	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	140374485	140374485	A	G	SNP	ADCK2	ENST00000483369	human	ensembl	69_37n	1	putative	missense	c.520	p.S174G	0.001	pfam_UbiB_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADCK2	HGNC	ENSG00000133597	170	0	0	133	26	16.35	-	-	-	G	140374485	A	G	140374485	3	3	67	1	0	0	0	0	1	0	0	0	289	291	11	5	1014	5	ADCK2	7	140374485	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1770804	140374485	18764178	516	3878										
TRPV6	0	genome.wustl.edu	37	chr7	142574210	142574210	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaaaggggtgagaccctggTgattgggcacgaggtccagg	18	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	142574210	142574210	T	G	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	missense	c.713	p.H238P	0.985	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	209	1	0.47	238	32	11.81	-	-	-	G	142574210	T	G	142574210	3	3	67	1	0	0	0	0	1	0	0	0	16696	1696	59	5	1504	5	TRPV6	7	142574210	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2199725	142574210	16564453	517	3879										
C7orf34	0	genome.wustl.edu	37	chr7	142637571	142637571	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgttcacaagcactctttccAcctcagcttctgctttagtc	5	14	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	142637571	142637571	A	C	SNP	C7orf34	ENST00000409607	human	ensembl	69_37n	1	known	missense	c.341	p.H114P	0.448	NULL	NULL	-	no_errors	C7orf34	HGNC	ENSG00000165131	219	0	0	205	24	10.39	-	-	-	C	142637571	A	C	142637571	3	2	67	1	0	0	0	0	1	0	0	0	2412	159	6	5	347	5	C7orf34	7	142637571	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	63361	142637571	16501092	518	3880										
PIP	0	genome.wustl.edu	37	chr7	142829249	142829249	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgttcagggccagccctgccAccctgctcctggttctctgc	10	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	142829249	142829249	A	C	SNP	PIP	ENST00000291009	human	ensembl	69_37n	1	known	missense	c.40	p.T14P	0.000	pfam_SV_autoAg,pirsf_SV_autoAg	pfam_SV_autoAg,pirsf_SV_autoAg	-	no_errors	PIP	HGNC	ENSG00000159763	76	0	0	51	11	17.74	-	-	-	C	142829249	A	C	142829249	3	2	67	1	0	0	0	0	1	0	0	0	12009	159	6	5	42	5	PIP	7	142829249	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	191678	142829249	16309414	519	3881										
TPK1	0	genome.wustl.edu	37	chr7	144245657	144245657	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaataaggccacaccaatcAccctccattccagtgtctac	6	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	144245657	144245657	A	C	SNP	TPK1	ENST00000360057	human	ensembl	69_37n	-1	known	silent	c.540	p.G180	0.000	pfam_Thiamin_PyroPKinase_B1-bd,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511	216	0	0	162	34	17.35	-	-	-	C	144245657	A	C	144245657	2	2	67	1	0	0	0	0	0	0	0	1	16500	146	6	5		5	TPK1	7	144245657	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1416408	144245657	14893006	520	3882										
SSPO	0	genome.wustl.edu	37	chr7	149483201	149483201	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagtgacggtgaatggggTgagcgtgacgccccccaagg	18	10	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	149483201	149483201	T	G	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	48	0	0	30	7	18.92	-	-	-	G	149483201	T	G	149483201	1	3	67	0	1	0	0	0	0	0	0	0	15280	1696	59	5		5	SSPO	7	149483201	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5237544	149483201	9655462	521	3883										
SLC4A2	0	genome.wustl.edu	37	chr7	150768694	150768694	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctttggggggctgctgggTgaggagagccttcaggtagg	19	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	150768694	150768694	T	G	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	splice_site	c.2191+2	e13+2	1.000	-	-	-	no_errors	SLC4A2	HGNC	ENSG00000164889	49	0	0	42	5	10.64	-	-	-	G	150768694	T	G	150768694	5	3	67	1	0	0	0	0	0	0	1	0	14743	1710	59	5	2243	5	SLC4A2	7	150768694	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1285493	150768694	8369969	522	3884										
DNAJB6	0	genome.wustl.edu	37	chr7	157175008	157175008	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagaagccgagggacggggTcgtttttctctgcgttcagt	15	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	7	157175008	157175008	T	G	SNP	DNAJB6	ENST00000262177	human	ensembl	69_37n	1	known	missense	c.415	p.S139A	0.073	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB6	HGNC	ENSG00000105993	516	4	0.76	357	44	10.95	-	-	-	G	157175008	T	G	157175008	3	3	67	1	0	0	0	0	1	0	0	0	4659	1667	58	5	433	5	DNAJB6	7	157175008	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6406314	157175008	1963655	523	3885										
LGI3	0	genome.wustl.edu	37	chr8	22006075	22006075	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcaggcacctgggtcacctcAccctgggccacaaactgctt	9	16	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	22006075	22006075	A	C	SNP	LGI3	ENST00000306317	human	ensembl	69_37n	-1	known	silent	c.1245	p.G415	0.001	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481	107	0	0	66	18	21.43	-	-	-	C	22006075	A	C	22006075	2	2	67	1	0	0	0	0	0	0	0	1	8808	146	6	5		5	LGI3	8	22006075	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		22006075	124357947	524	3886										
SORBS3	0	genome.wustl.edu	37	chr8	22424566	22424566	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accctgcggtcctcgtccccAcctgcagggagctgactctg	11	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	22424566	22424566	A	C	SNP	SORBS3	ENST00000523348	human	ensembl	69_37n	1	putative	missense	c.16	p.T6P	0.005	pfam_SH3_2,smart_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SORBS3	HGNC	ENSG00000120896	61	0	0	36	6	14.29	-	-	-	C	22424566	A	C	22424566	3	2	67	1	0	0	0	0	1	0	0	0	15018	174	6	5		5	SORBS3	8	22424566	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	418491	22424566	123939456	525	3887										
ADRA1A	0	genome.wustl.edu	37	chr8	26614180	26614180	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggctcctgggctcctggggTggattccaaagacagtgggt	16	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	26614180	26614180	T	G	SNP	ADRA1A	ENST00000380581	human	ensembl	69_37n	-1	known	missense	c.1000	p.T334P	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Adrene_rcpt_A1Cs,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	97	0	0	82	24	22.64	-	-	-	G	26614180	T	G	26614180	3	3	67	1	0	0	0	0	1	0	0	0	334	1711	59	5		5	ADRA1A	8	26614180	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4189614	26614180	119749842	526	3888										
ZNF395	0	genome.wustl.edu	37	chr8	28206665	28206665	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaccactctgggcccggggTggagaagtgacgatcagatg	16	10	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	28206665	28206665	T	G	SNP	ZNF395	ENST00000344423	human	ensembl	69_37n	-1	known	silent	c.1407	p.P469	0.997	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	131	1	0.75	107	20	15.75	-	-	-	G	28206665	T	G	28206665	2	3	67	1	0	0	0	0	0	0	0	1	17977	1683	59	5		5	ZNF395	8	28206665	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1592485	28206665	118157357	527	3889										
INTS9	0	genome.wustl.edu	37	chr8	28671028	28671028	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caattttctgagaatatcccAccagctggattttactaagg	7	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	28671028	28671028	A	C	SNP	INTS9	ENST00000521022	human	ensembl	69_37n	-1	known	missense	c.590	p.V197G	1.000	NULL	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299	135	0	0	276	36	11.54	-	-	-	C	28671028	A	C	28671028	3	2	67	1	0	0	0	0	1	0	0	0	7839	159	6	5	1430	5	INTS9	8	28671028	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	464363	28671028	117692994	528	3890										
KIF13B	0	genome.wustl.edu	37	chr8	28997707	28997707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacgtgcagccgacctgccAcctgcagcaatgagggaagg	13	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	28997707	28997707	A	C	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.2486	p.V829G	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	120	1	0.82	69	17	19.77	-	-	-	C	28997707	A	C	28997707	3	2	67	1	0	0	0	0	1	0	0	0	8327	173	6	5	3074	5	KIF13B	8	28997707	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	326679	28997707	117366315	529	3891										
EIF4EBP1	0	genome.wustl.edu	37	chr8	37917603	37917603	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttctccctcactcagggcAcctgccccctcctcttcgtg	6	20	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	37917603	37917603	A	C	SNP	EIF4EBP1	ENST00000520657	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.878	-	-	-	no_errors	EIF4EBP1	HGNC	ENSG00000187840	27	0	0	22	5	18.52	-	-	-	C	37917603	A	C	37917603	1	2	67	0	1	0	0	0	0	0	0	0	5069	174	6	5		5	EIF4EBP1	8	37917603	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8919896	37917603	108446419	530	3892										
TACC1	0	genome.wustl.edu	37	chr8	38646276	38646276	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgaaaccccgatccgatcAcctttcaaggagtcctgtga	9	13	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	38646276	38646276	A	C	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	silent	c.216	p.S72	0.027	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	129	0	0	184	23	10.95	-	-	-	C	38646276	A	C	38646276	2	2	67	1	0	0	0	0	0	0	0	1	15593	146	6	5		5	TACC1	8	38646276	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	728673	38646276	107717746	531	3893										
TGS1	0	genome.wustl.edu	37	chr8	56723588	56723588	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgttgtgttcctcagcccAccttggggagggccagacta	13	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	56723588	56723588	A	C	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	silent	c.2292	p.P764	0.015	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	263	1	0.38	407	49	10.75	-	-	-	C	56723588	A	C	56723588	2	2	67	1	0	0	0	0	0	0	0	1	15932	146	6	5		5	TGS1	8	56723588	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	18077312	56723588	89640434	532	3894										
ASPH	0	genome.wustl.edu	37	chr8	62566125	62566125	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgaggatgaggacaagcttAcctgcctccacaggaacctg	11	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	62566125	62566125	A	C	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	splice_site	c.415+2	e4+2	1.000	-	-	-	no_errors	ASPH	HGNC	ENSG00000198363	165	1	0.6	134	18	11.84	-	-	-	C	62566125	A	C	62566125	5	2	67	1	0	0	0	0	0	0	1	0	1057	405	14	5	1959	5	ASPH	8	62566125	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5842537	62566125	83797897	533	3895										
TRIM55	0	genome.wustl.edu	37	chr8	67066551	67066551	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtggtaaggaaactagtgcAcctgcagctacttctcaggt	11	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	67066551	67066551	A	C	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	silent	c.1506	p.A502	0.998	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	120	1	0.83	103	21	16.94	-	-	-	C	67066551	A	C	67066551	2	2	67	1	0	0	0	0	0	0	0	1	16625	146	6	5		5	TRIM55	8	67066551	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4500426	67066551	79297471	534	3896										
PREX2	0	genome.wustl.edu	37	chr8	68942790	68942790	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcagcagtgatggaagcccTccaagccatgaaagctgtct	11	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	68942790	68942790	T	C	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.602	p.L201P	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	111	0	0	146	22	13.1	-	-	-	C	68942790	T	C	68942790	3	2	67	1	0	0	0	0	1	0	0	0	12558	1551	54	5	624	5	PREX2	8	68942790	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1876239	68942790	77421232	535	3897										
NCOA2	0	genome.wustl.edu	37	chr8	71069091	71069091	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggggaaaactgactgggTgggattcgagggctgccagc	18	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	71069091	71069091	T	G	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.1509	p.P503	0.902	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	125	1	0.79	167	32	15.84	-	-	-	G	71069091	T	G	71069091	2	3	67	1	0	0	0	0	0	0	0	1	10301	1683	59	5		5	NCOA2	8	71069091	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2126301	71069091	75294931	536	3898										
IMPA1	0	genome.wustl.edu	37	chr8	82598083	82598083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccagcgtaggagccaggccAccttcctttttgccacctgt	9	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	82598083	82598083	A	C	SNP	IMPA1	ENST00000449740	human	ensembl	69_37n	-1	known	missense	c.68	p.V23G	0.000	NULL	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	-	no_errors	IMPA1	HGNC	ENSG00000133731	49	0	0	122	18	12.86	-	-	-	C	82598083	A	C	82598083	3	2	67	1	0	0	0	0	1	0	0	0	7776	159	6	5	978	5	IMPA1	8	82598083	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	11528992	82598083	63765939	537	3899										
CPNE3	0	genome.wustl.edu	37	chr8	87570602	87570602	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatacatacaaactccttccTcccaagaacccagccacgaa	3	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	87570602	87570602	T	C	SNP	CPNE3	ENST00000198765	human	ensembl	69_37n	1	known	silent	c.1578	p.P526	0.995	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE3	HGNC	ENSG00000085719	203	0	0	181	46	20.18	-	-	-	C	87570602	T	C	87570602	2	2	67	1	0	0	0	0	0	0	0	1	3843	1538	54	5		5	CPNE3	8	87570602	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4972519	87570602	58793420	538	3900										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885140	88885140	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctccgaggcggggtatggggAgggtatggttgtgagcaggt	21	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	88885140	88885140	A	G	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.1060	p.S354P	0.216	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	179	0	0	164	27	13.99	-	-	-	G	88885140	A	G	88885140	3	3	67	1	0	0	0	0	1	0	0	0	4304	304	11	5	131	5	DCAF4L2	8	88885140	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1314538	88885140	57478882	539	3901										
CALB1	0	genome.wustl.edu	37	chr8	91094912	91094912	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgatgagggatgactgcaggTgggattctgccattgtacag	15	6	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	91094912	91094912	T	G	SNP	CALB1	ENST00000265431	human	ensembl	69_37n	-1	known	missense	c.14	p.H5P	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALB1	HGNC	ENSG00000104327	399	3	0.74	520	88	14.38	-	-	-	G	91094912	T	G	91094912	3	3	67	1	0	0	0	0	1	0	0	0	2598	1696	59	5	815	5	CALB1	8	91094912	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2209772	91094912	55269110	540	3902										
OTUD6B	0	genome.wustl.edu	37	chr8	92082538	92082538	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccaatggagccccgggtgAgggttgaggggtggaaggtg	21	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	92082538	92082538	A	G	SNP	OTUD6B	ENST00000285420	human	ensembl	69_37n	1	known	missense	c.16	p.R6G	0.971	NULL	pfam_OTU,pfam_Peptidase_C65_otubain,pfscan_OTU	-	no_errors	OTUD6B	HGNC	ENSG00000155100	255	1	0.39	293	56	16	-	-	-	G	92082538	A	G	92082538	3	3	67	1	0	0	0	0	1	0	0	0	11390	295	11	5	18	5	OTUD6B	8	92082538	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	987626	92082538	54281484	541	3903										
RGS22	0	genome.wustl.edu	37	chr8	101083657	101083657	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttatcttcttcagtggcaggAggtggtagactgggtggttt	15	5	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	101083657	101083657	A	G	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	silent	c.534	p.P178	0.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	770	0	0	293	69	19.01	-	-	-	G	101083657	A	G	101083657	2	3	67	1	0	0	0	0	0	0	0	1	13389	291	11	5		5	RGS22	8	101083657	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9001119	101083657	45280365	542	3904										
SYBU	0	genome.wustl.edu	37	chr8	110587743	110587743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggacgttagccccaggggTggaatgcacaagctccaggt	14	11	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	110587743	110587743	T	G	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.1384	p.T462P	0.008	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	223	1	0.44	258	34	11.6	-	-	-	G	110587743	T	G	110587743	3	3	67	1	0	0	0	0	1	0	0	0	15518	1696	59	5	611	5	SYBU	8	110587743	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9504086	110587743	35776279	543	3905										
KLHL38	0	genome.wustl.edu	37	chr8	124664055	124664055	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttctgtgggagtagcgggccAccagcatgggctcccccagc	14	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	124664055	124664055	A	C	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.1112	p.V371G	0.034	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	94	0	0	74	10	11.9	-	-	-	C	124664055	A	C	124664055	3	2	67	1	0	0	0	0	1	0	0	0	8443	159	6	5	645	5	KLHL38	8	124664055	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14076312	124664055	21699967	544	3906										
ANXA13	0	genome.wustl.edu	37	chr8	124748001	124748001	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aataaagtgcttacaggctgTggggcctctggctctccatt	11	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	124748001	124748001	T	G	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	silent	c.132	p.P44	0.002	prints_AnnexinXIII	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	247	0	0	220	26	10.48	-	-	-	G	124748001	T	G	124748001	2	3	67	1	0	0	0	0	0	0	0	1	716	1683	59	5		5	ANXA13	8	124748001	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	83946	124748001	21616021	545	3907										
TG	0	genome.wustl.edu	37	chr8	134042126	134042126	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtggcggctctgacctgggTgcagacccacatccgaggat	15	12	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	134042126	134042126	T	G	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.7097	p.V2366G	1.000	pfam_CarbesteraseB,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	174	1	0.57	102	23	18.25	-	-	-	G	134042126	T	G	134042126	3	3	67	1	0	0	0	0	1	0	0	0	15908	1696	59	5	7259	5	TG	8	134042126	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9294125	134042126	12321896	546	3908										
NDRG1	0	genome.wustl.edu	37	chr8	134296567	134296567	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgagacatgtccctgctgtcAcctgcctgcaaggagacaaa	10	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	134296567	134296567	A	C	SNP	NDRG1	ENST00000520230	human	ensembl	69_37n	-1	putative	silent	c.39	p.G13	1.000	NULL	pfam_Ndr	-	no_stop_codon:bad_bp_length_for_coding_region	NDRG1	HGNC	ENSG00000104419	113	1	0.87	187	21	10.05	-	-	-	C	134296567	A	C	134296567	2	2	67	1	0	0	0	0	0	0	0	1	10323	174	6	5		5	NDRG1	8	134296567	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	254441	134296567	12067455	547	3909										
TRAPPC9	0	genome.wustl.edu	37	chr8	141321387	141321387	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagggcaccggtggcagggTgaggccgccagggagggcga	22	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	141321387	141321387	T	G	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.1876	p.T626P	0.846	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	133	0	0	93	29	23.77	-	-	-	G	141321387	T	G	141321387	3	3	67	1	0	0	0	0	1	0	0	0	16561	1696	59	5	1920	5	TRAPPC9	8	141321387	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7024820	141321387	5042635	548	3910										
EIF2C2	0	genome.wustl.edu	37	chr8	141557699	141557699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actgcgtggccatccccagcAccgtgtctcccacgcgcttg	10	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	141557699	141557699	A	C	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.1616	p.V539G	0.999	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	90	0	0	135	24	15.09	-	-	-	C	141557699	A	C	141557699	3	2	67	1	0	0	0	0	1	0	0	0	5041	159	6	5	991	5	EIF2C2	8	141557699	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	236312	141557699	4806323	549	3911										
LYNX1	0	genome.wustl.edu	37	chr8	143856635	143856635	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgggggccagggccagggTggccggggtggcaaggccgg	24	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	143856635	143856635	T	G	SNP	LYNX1	ENST00000345173	human	ensembl	69_37n	-1	known	missense	c.301	p.T101P	0.000	smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYNX1	HGNC	ENSG00000180155	58	0	0	35	10	22.22	-	-	-	G	143856635	T	G	143856635	3	3	67	1	0	0	0	0	1	0	0	0	9175	1696	59	5	359	5	LYNX1	8	143856635	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2298936	143856635	2507387	550	3912										
TSTA3	0	genome.wustl.edu	37	chr8	144696577	144696577	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggggcccgaagacgttggTggggatgacagcggtgaagg	21	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	144696577	144696577	T	G	SNP	TSTA3	ENST00000425753	human	ensembl	69_37n	-1	known	missense	c.511	p.T171P	1.000	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522	138	1	0.71	106	15	12.4	-	-	-	G	144696577	T	G	144696577	3	3	67	1	0	0	0	0	1	0	0	0	16770	1696	59	5	478	5	TSTA3	8	144696577	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	839942	144696577	1667445	551	3913										
TSTA3	0	genome.wustl.edu	37	chr8	144697004	144697004	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttgtcagggaagatacaggTggacaggcaggacaccacct	13	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	144697004	144697004	T	G	SNP	TSTA3	ENST00000425753	human	ensembl	69_37n	-1	known	missense	c.343	p.T115P	1.000	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522	114	1	0.85	92	21	18.58	-	-	-	G	144697004	T	G	144697004	3	3	67	1	0	0	0	0	1	0	0	0	16770	1696	59	5	654	5	TSTA3	8	144697004	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	427	144697004	1667018	552	3914										
SCRIB	0	genome.wustl.edu	37	chr8	144893213	144893213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagggccttgagattgaggTgggtgagcgcgaacggcaga	18	7	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	144893213	144893213	T	G	SNP	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	missense	c.1136	p.H379P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	44	0	0	48	6	11.11	-	-	-	G	144893213	T	G	144893213	3	3	67	1	0	0	0	0	1	0	0	0	14025	1696	59	5	3939	5	SCRIB	8	144893213	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	196209	144893213	1470809	553	3915										
GRINA	0	genome.wustl.edu	37	chr8	145065974	145065974	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acaggccttcatccgcaaggTgggtaggggcatctccaagg	14	11	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145065974	145065974	T	G	SNP	GRINA	ENST00000313269	human	ensembl	69_37n	1	known	splice_site	c.492+2	e2+2	1.000	-	-	-	no_errors	GRINA	HGNC	ENSG00000178719	158	0	0	124	34	21.12	-	-	-	G	145065974	T	G	145065974	5	3	67	1	0	0	0	0	0	0	1	0	6836	1710	59	5	500	5	GRINA	8	145065974	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	172761	145065974	1298048	554	3916										
MAF1	0	genome.wustl.edu	37	chr8	145161369	145161369	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgaatgtgacatctacaggTgggccggcatccctgcagat	12	11	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145161369	145161369	T	G	SNP	MAF1	ENST00000322428	human	ensembl	69_37n	1	known	splice_site	c.500+2	e4+2	1.000	-	-	-	no_errors	MAF1	HGNC	ENSG00000179632	114	0	0	128	17	11.72	-	-	-	G	145161369	T	G	145161369	5	3	67	1	0	0	0	0	0	0	1	0	9223	1710	59	5	516	5	MAF1	8	145161369	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	95395	145161369	1202653	555	3917										
MAF1	0	genome.wustl.edu	37	chr8	145161923	145161923	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggagtgggtacaacagggTgggggcctcctctacttggt	16	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145161923	145161923	T	G	SNP	MAF1	ENST00000534811	human	ensembl	69_37n	1	putative	missense	c.260	p.V87G	0.000	NULL	pfam_Maf1	-	no_start_codon	MAF1	HGNC	ENSG00000179632	127	1	0.76	78	25	24.27	-	-	-	G	145161923	T	G	145161923	3	3	67	1	0	0	0	0	1	0	0	0	9223	1711	59	5		5	MAF1	8	145161923	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	554	145161923	1202099	556	3918										
HEATR7A	0	genome.wustl.edu	37	chr8	145255408	145255408	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgagaggacccgcgtgggcAccctgcaggtggtcagacat	15	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145255408	145255408	A	C	SNP	HEATR7A	ENST00000326134	human	ensembl	69_37n	1	known	missense	c.1105	p.T369P	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR7A	HGNC	ENSG00000179832	110	1	0.88	67	15	18.29	-	-	-	C	145255408	A	C	145255408	3	2	67	1	0	0	0	0	1	0	0	0	7085	159	6	5	1143	5	HEATR7A	8	145255408	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	93485	145255408	1108614	557	3919										
CPSF1	0	genome.wustl.edu	37	chr8	145619167	145619167	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccttcagtggccccccggcAcggggtcctccagaacgtgt	12	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145619167	145619167	A	C	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.3946	p.C1316G	0.996	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	123	0	0	159	23	12.37	-	-	-	C	145619167	A	C	145619167	3	2	67	1	0	0	0	0	1	0	0	0	3854	159	6	5	401	5	CPSF1	8	145619167	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	363759	145619167	744855	558	3920										
KIFC2	0	genome.wustl.edu	37	chr8	145697644	145697644	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctacaatgaggctgtcaggTgggctactccaccagggagg	14	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145697644	145697644	T	G	SNP	KIFC2	ENST00000301332	human	ensembl	69_37n	1	known	splice_site	c.1607+2	e14+2	0.812	-	-	-	no_errors	KIFC2	HGNC	ENSG00000167702	70	0	0	35	11	23.91	-	-	-	G	145697644	T	G	145697644	5	3	67	1	0	0	0	0	0	0	1	0	8365	1710	59	5	1663	5	KIFC2	8	145697644	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	78477	145697644	666378	559	3921										
MFSD3	0	genome.wustl.edu	37	chr8	145735753	145735753	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accacccaaggtgagcagggTgccagcagcctgtttcctct	11	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	145735753	145735753	T	G	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	1	known	silent	c.693	p.G231	0.088	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	67	0	0	62	22	26.19	-	-	-	G	145735753	T	G	145735753	2	3	67	1	0	0	0	0	0	0	0	1	9603	1683	59	5		5	MFSD3	8	145735753	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	38109	145735753	628269	560	3922										
RPL8	0	genome.wustl.edu	37	chr8	146015839	146015839	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgggtttgtcaattcggccAcctccagccaccacacctgt	8	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	8	146015839	146015839	A	C	SNP	RPL8	ENST00000262584	human	ensembl	69_37n	-1	known	silent	c.516	p.G172	0.968	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016	113	1	0.88	127	36	21.82	-	-	-	C	146015839	A	C	146015839	2	2	67	1	0	0	0	0	0	0	0	1	13688	146	6	5		5	RPL8	8	146015839	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	280086	146015839	348183	561	3923										
KIAA2026	0	genome.wustl.edu	37	chr9	5920431	5920431	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agactagttacattggatggTgccgaagccgtgtgaatggt	14	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	5920431	5920431	T	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	silent	c.5565	p.A1855	0.019	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	188	1	0.52	155	37	19.27	-	-	-	G	5920431	T	G	5920431	2	3	67	1	0	0	0	0	0	0	0	1	8322	1683	59	5		5	KIAA2026	9	5920431	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		5920431	135293000	562	3924										
FREM1	0	genome.wustl.edu	37	chr9	14737550	14737550	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgaaggcaacaggttcaccAccgatccactcccagtggcc	10	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	14737550	14737550	A	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.6387	p.G2129	0.065	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	123	1	0.81	81	20	19.42	-	-	-	C	14737550	A	C	14737550	2	2	67	1	0	0	0	0	0	0	0	1	6093	146	6	5		5	FREM1	9	14737550	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8817119	14737550	126475881	563	3925										
PLIN2	0	genome.wustl.edu	37	chr9	19116355	19116355	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgaggataaaagggacctAccagccagttgaggggcgtg	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	19116355	19116355	A	C	SNP	PLIN2	ENST00000464326	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	PLIN2	HGNC	ENSG00000147872	131	1	0.75	72	15	16.85	-	-	-	C	19116355	A	C	19116355	5	2	67	1	0	0	0	0	0	0	1	0	12164	391	14	5	112	5	PLIN2	9	19116355	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4378805	19116355	122097076	564	3926										
NFX1	0	genome.wustl.edu	37	chr9	33351758	33351758	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaccctgccataccagctcAccctgccctgtgactgcttg	8	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	33351758	33351758	A	C	SNP	NFX1	ENST00000379540	human	ensembl	69_37n	1	known	silent	c.2625	p.S875	0.109	smart_Znf_NFX1	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102	116	1	0.85	62	19	23.46	-	-	-	C	33351758	A	C	33351758	2	2	67	1	0	0	0	0	0	0	0	1	10459	146	6	5		5	NFX1	9	33351758	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14235403	33351758	107861673	565	3927										
UBAP2	0	genome.wustl.edu	37	chr9	33923997	33923997	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggccaaactttgtgacatcAcctaggaaagagcactgact	9	11	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	33923997	33923997	A	C	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	silent	c.2592	p.G864	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	341	3	0.87	200	41	16.94	-	-	-	C	33923997	A	C	33923997	2	2	67	1	0	0	0	0	0	0	0	1	16934	173	6	5		5	UBAP2	9	33923997	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	572239	33923997	107289434	566	3928										
CNTFR	0	genome.wustl.edu	37	chr9	34552233	34552233	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggacgctgaccaagaagggTgccgagggtcccccgccgct	16	14	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	34552233	34552233	T	G	SNP	CNTFR	ENST00000351266	human	ensembl	69_37n	-1	known	silent	c.1044	p.A348	0.002	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTFR	HGNC	ENSG00000122756	39	0	0	22	13	37.14	-	-	-	G	34552233	T	G	34552233	2	3	67	1	0	0	0	0	0	0	0	1	3668	1683	59	5		5	CNTFR	9	34552233	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	628236	34552233	106661198	567	3929										
FANCG	0	genome.wustl.edu	37	chr9	35075528	35075528	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggcctggccctgaagcaggTgggtggcagagacccagagt	17	10	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35075528	35075528	T	G	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	missense	c.1367	p.H456P	0.992	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	212	0	0	208	35	14.34	-	-	-	G	35075528	T	G	35075528	3	3	67	1	0	0	0	0	1	0	0	0	5714	1696	59	5	521	5	FANCG	9	35075528	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	523295	35075528	106137903	568	3930										
CD72	0	genome.wustl.edu	37	chr9	35616642	35616642	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactcctaacagcaggcaggTgaggagcaggccgagcagga	15	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35616642	35616642	T	G	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	missense	c.307	p.T103P	0.997	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	138	1	0.71	84	18	17.65	-	-	-	G	35616642	T	G	35616642	3	3	67	1	0	0	0	0	1	0	0	0	3063	1696	59	5	792	5	CD72	9	35616642	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	541114	35616642	105596789	569	3931										
TPM2	0	genome.wustl.edu	37	chr9	35689830	35689830	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccatggctgcggtggggggTgggccggccggcaggcggtg	23	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35689830	35689830	T	G	SNP	TPM2	ENST00000471212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.578	-	-	-	no_errors	TPM2	HGNC	ENSG00000198467	73	0	0	92	15	14.02	-	-	-	G	35689830	T	G	35689830	1	3	67	0	1	0	0	0	0	0	0	0	16502	1711	59	5		5	TPM2	9	35689830	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	73188	35689830	105523601	570	3932										
GBA2	0	genome.wustl.edu	37	chr9	35737781	35737781	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgccagcccgtagaccacAcccacccagacttcatcaga	7	18	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35737781	35737781	A	C	SNP	GBA2	ENST00000545786	human	ensembl	69_37n	-1	known	silent	c.2487	p.G829	0.845	pfam_Glucosylceramidase,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	136	1	0.73	110	20	15.38	-	-	-	C	35737781	A	C	35737781	2	2	67	1	0	0	0	0	0	0	0	1	6317	146	6	5		5	GBA2	9	35737781	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	47951	35737781	105475650	571	3933										
GBA2	0	genome.wustl.edu	37	chr9	35739052	35739052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccttttcacaggtgccatcAccccactcatcaggtaccgt	6	16	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35739052	35739052	A	C	SNP	GBA2	ENST00000545786	human	ensembl	69_37n	-1	known	missense	c.1760	p.V587G	0.000	pfam_Glucosylceramidase,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	141	1	0.69	99	17	14.66	-	-	-	C	35739052	A	C	35739052	3	2	67	1	0	0	0	0	1	0	0	0	6317	159	6	5	1069	5	GBA2	9	35739052	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1271	35739052	105474379	572	3934										
OR13J1	0	genome.wustl.edu	37	chr9	35870173	35870173	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcatcagaggcacaaaggTgggcgtgtagcagatgtcca	14	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	35870173	35870173	T	G	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.226	p.T76P	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	180	1	0.54	101	20	16.39	-	-	-	G	35870173	T	G	35870173	3	3	67	1	0	0	0	0	1	0	0	0	11017	1696	59	5	715	5	OR13J1	9	35870173	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	131121	35870173	105343258	573	3935										
TRPM3	0	genome.wustl.edu	37	chr9	73151469	73151469	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcctcttctagaagaaagggTgtggtggctaggtagcggct	16	7	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	73151469	73151469	T	G	SNP	TRPM3	ENST00000396280	human	ensembl	69_37n	-1	known	missense	c.4069	p.T1357P	0.003	NULL	pfam_Ion_trans_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPM3	HGNC	ENSG00000083067	372	1	0.27	334	42	11.11	-	-	-	G	73151469	T	G	73151469	3	3	67	1	0	0	0	0	1	0	0	0	16683	1683	59	5	603	5	TRPM3	9	73151469	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	37281296	73151469	68061962	574	3936										
GKAP1	0	genome.wustl.edu	37	chr9	86421331	86421331	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttccagtatttcgacctttAccttttccaggttcagaatc	5	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	86421331	86421331	A	C	SNP	GKAP1	ENST00000376371	human	ensembl	69_37n	-1	known	silent	c.102	p.G34	1.000	NULL	NULL	-	no_errors	GKAP1	HGNC	ENSG00000165113	234	0	0	168	29	14.57	-	-	-	C	86421331	A	C	86421331	2	2	67	1	0	0	0	0	0	0	0	1	6475	378	14	5		5	GKAP1	9	86421331	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13269862	86421331	54792100	575	3937										
GKAP1	0	genome.wustl.edu	37	chr9	86421358	86421358	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaggttcagaatcagagccActgccactatccacttgtaa	7	13	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	86421358	86421358	A	C	SNP	GKAP1	ENST00000376371	human	ensembl	69_37n	-1	known	missense	c.75	p.S25R	1.000	NULL	NULL	-	no_errors	GKAP1	HGNC	ENSG00000165113	261	1	0.38	153	24	13.56	-	-	-	C	86421358	A	C	86421358	3	2	67	1	0	0	0	0	1	0	0	0	6475	156	6	5	1069	5	GKAP1	9	86421358	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	27	86421358	54792073	576	3938										
FAM120AOS	0	genome.wustl.edu	37	chr9	96212843	96212843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggcagcagctgtccggccAcagcctgtcggttgcatcct	13	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	96212843	96212843	A	C	SNP	FAM120AOS	ENST00000375412	human	ensembl	69_37n	-1	known	missense	c.602	p.V201G	0.001	NULL	NULL	-	no_errors	FAM120AOS	HGNC	ENSG00000188938	140	0	0	81	15	15.62	-	-	-	C	96212843	A	C	96212843	3	2	67	1	0	0	0	0	1	0	0	0	5456	159	6	5	176	5	FAM120AOS	9	96212843	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9791485	96212843	45000588	577	3939										
FAM120A	0	genome.wustl.edu	37	chr9	96259763	96259763	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttttctcaggtccgggcccAccagctggtcttgccacctt	10	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	96259763	96259763	A	C	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	missense	c.815	p.H272P	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	140	1	0.71	160	31	16.23	-	-	-	C	96259763	A	C	96259763	3	2	67	1	0	0	0	0	1	0	0	0	5455	159	6	5	829	5	FAM120A	9	96259763	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	46920	96259763	44953668	578	3940										
ZNF169	0	genome.wustl.edu	37	chr9	97054651	97054651	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccttccgggatgtggctgTggccttcacccagaaggagt	15	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	97054651	97054651	T	G	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	1	known	missense	c.62	p.V21G	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	229	1	0.43	124	20	13.89	-	-	-	G	97054651	T	G	97054651	3	3	67	1	0	0	0	0	1	0	0	0	17838	1696	59	5	68	5	ZNF169	9	97054651	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	794888	97054651	44158780	579	3941										
C9orf3	0	genome.wustl.edu	37	chr9	97844865	97844865	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgccctgcaggccatgggTgtgtacctctacggggagct	15	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	97844865	97844865	T	G	SNP	C9orf3	ENST00000445181	human	ensembl	69_37n	1	known	missense	c.421	p.C141G	0.119	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C9orf3	HGNC	ENSG00000148120	123	1	0.8	51	14	21.54	-	-	-	G	97844865	T	G	97844865	3	3	67	1	0	0	0	0	1	0	0	0	2502	1683	59	5	2081	5	C9orf3	9	97844865	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	790214	97844865	43368566	580	3942										
FANCC	0	genome.wustl.edu	37	chr9	97869415	97869415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggaagttgaggagaaggTgcctgatcagctgttgtgca	16	6	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	97869415	97869415	T	G	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	missense	c.1466	p.H489P	0.667	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	346	2	0.57	270	32	10.46	-	-	-	G	97869415	T	G	97869415	3	3	67	1	0	0	0	0	1	0	0	0	5710	1696	59	5	218	5	FANCC	9	97869415	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24550	97869415	43344016	581	3943										
PTCH1	0	genome.wustl.edu	37	chr9	98209258	98209258	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgcagctcaatgacttccAccttcgaatccctcctctca	4	18	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	98209258	98209258	A	C	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.4280	p.V1427G	1.000	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	55	0	0	51	12	19.05	-	-	-	C	98209258	A	C	98209258	3	2	67	1	0	0	0	0	1	0	0	0	12810	159	6	5	67	5	PTCH1	9	98209258	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	339843	98209258	43004173	582	3944										
HABP4	0	genome.wustl.edu	37	chr9	99227700	99227700	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgcgcggcagaggcagaggTggccctgggaacagagtttt	17	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	99227700	99227700	T	G	SNP	HABP4	ENST00000375249	human	ensembl	69_37n	1	known	silent	c.594	p.G198	0.990	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956	307	1	0.32	151	28	15.56	-	-	-	G	99227700	T	G	99227700	2	3	67	1	0	0	0	0	0	0	0	1	6990	1683	59	5		5	HABP4	9	99227700	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1018442	99227700	41985731	583	3945										
ALDOB	0	genome.wustl.edu	37	chr9	104192215	104192215	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttctcttcagtgttttccAccttgatcctctgcaggcgg	10	12	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	104192215	104192215	A	C	SNP	ALDOB	ENST00000374855	human	ensembl	69_37n	-1	known	missense	c.146	p.V49G	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOB	HGNC	ENSG00000136872	127	0	0	155	21	11.73	-	-	-	C	104192215	A	C	104192215	3	2	67	1	0	0	0	0	1	0	0	0	508	159	6	5	976	5	ALDOB	9	104192215	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4964515	104192215	37021216	584	3946										
ABCA1	0	genome.wustl.edu	37	chr9	107593278	107593278	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttctcggtgcccgtcagcAccctgatgattgcctgctcc	9	16	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	107593278	107593278	A	C	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.1820	p.V607G	0.999	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	112	0	0	96	19	16.52	-	-	-	C	107593278	A	C	107593278	3	2	67	1	0	0	0	0	1	0	0	0	28	159	6	5	5113	5	ABCA1	9	107593278	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3401063	107593278	33620153	585	3947										
LPAR1	0	genome.wustl.edu	37	chr9	113637793	113637793	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagccttctgtggggccggTggggttctcactgcgctggc	17	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	113637793	113637793	T	G	SNP	LPAR1	ENST00000538760	human	ensembl	69_37n	-1	known	missense	c.1006	p.T336P	1.000	prints_LPA_rcpt_EDG2	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121	350	1	0.28	221	27	10.89	-	-	-	G	113637793	T	G	113637793	3	3	67	1	0	0	0	0	1	0	0	0	8970	1696	59	5	95	5	LPAR1	9	113637793	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6044515	113637793	27575638	586	3948										
COL27A1	0	genome.wustl.edu	37	chr9	117045991	117045991	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtctcctcctcttgtagggTgctccgggacgcatgggggc	16	12	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	117045991	117045991	T	G	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	silent	c.3882	p.G1294	0.999	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	116	0	0	92	21	18.58	-	-	-	G	117045991	T	G	117045991	2	3	67	1	0	0	0	0	0	0	0	1	3715	1683	59	5		5	COL27A1	9	117045991	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3408198	117045991	24167440	587	3949										
AKNA	0	genome.wustl.edu	37	chr9	117121928	117121928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgggcactgccttgggaggAccctggtggcctctgctttc	14	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	117121928	117121928	A	C	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.2438	p.V813G	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	119	1	0.83	73	17	18.89	-	-	-	C	117121928	A	C	117121928	3	2	67	1	0	0	0	0	1	0	0	0	463	275	10	5	1929	5	AKNA	9	117121928	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	75937	117121928	24091503	588	3950										
AKNA	0	genome.wustl.edu	37	chr9	117121964	117121964	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttccctggagttgcagccAccccatcaacttccagggag	9	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	117121964	117121964	A	C	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.2402	p.V801G	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	91	0	0	51	14	21.54	-	-	-	C	117121964	A	C	117121964	3	2	67	1	0	0	0	0	1	0	0	0	463	159	6	5	1965	5	AKNA	9	117121964	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	36	117121964	24091467	589	3951										
C9orf91	0	genome.wustl.edu	37	chr9	117379495	117379495	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catggcctgtgaaccacaggTggacccgggggccactggcc	15	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	117379495	117379495	T	G	SNP	C9orf91	ENST00000374049	human	ensembl	69_37n	1	known	missense	c.20	p.V7G	0.009	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	79	0	0	25	6	19.35	-	-	-	G	117379495	T	G	117379495	3	3	67	1	0	0	0	0	1	0	0	0	2530	1696	59	5	22	5	C9orf91	9	117379495	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	257531	117379495	23833936	590	3952										
TNC	0	genome.wustl.edu	37	chr9	117853232	117853232	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgactttcttgaggaccccAccttcggtagcgagggcaag	12	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	117853232	117853232	A	C	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.66	p.G22	0.984	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	118	1	0.83	73	16	17.98	-	-	-	C	117853232	A	C	117853232	2	2	67	1	0	0	0	0	0	0	0	1	16365	146	6	5		5	TNC	9	117853232	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	473737	117853232	23360199	591	3953										
DBC1	0	genome.wustl.edu	37	chr9	121971015	121971015	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctctctctaggcagctggTggttgggattgtggcgacag	15	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	121971015	121971015	T	G	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.1127	p.H376P	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	298	2	0.66	179	34	15.96	-	-	-	G	121971015	T	G	121971015	3	3	67	1	0	0	0	0	1	0	0	0	4279	1696	59	5	1166	5	DBC1	9	121971015	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4117783	121971015	19242416	592	3954										
GARNL3	0	genome.wustl.edu	37	chr9	130152975	130152975	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgccaaaggccaaatcaaaAccccggaagcggttagaaga	11	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	130152975	130152975	A	C	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.2799	p.K933N	0.344	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	186	0	0	74	14	15.73	-	-	-	C	130152975	A	C	130152975	3	2	67	1	0	0	0	0	1	0	0	0	6291	40	2	5	2905	5	GARNL3	9	130152975	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8181960	130152975	11060456	593	3955										
AK1	0	genome.wustl.edu	37	chr9	130634130	130634130	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaactcttctccttgctgcAcctcccgcgggtagccatca	7	17	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	130634130	130634130	A	C	SNP	AK1	ENST00000373176	human	ensembl	69_37n	-1	known	missense	c.296	p.V99G	1.000	pfam_Adenylate_kin,pfam_Zeta_toxin_domain,prints_Adenylate_kin,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Zeta_toxin_domain,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK1	HGNC	ENSG00000106992	164	0	0	172	29	14.43	-	-	-	C	130634130	A	C	130634130	3	2	67	1	0	0	0	0	1	0	0	0	439	159	6	5	300	5	AK1	9	130634130	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	481155	130634130	10579301	594	3956										
ST6GALNAC6	0	genome.wustl.edu	37	chr9	130658581	130658581	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggtgtcggcgtcctgcaggTggccctgggggcagggatgt	20	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	130658581	130658581	T	G	SNP	ST6GALNAC6	ENST00000291839	human	ensembl	69_37n	-1	known	silent	c.57	p.P19	0.452	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	206	2	0.96	225	37	14.12	-	-	-	G	130658581	T	G	130658581	2	3	67	1	0	0	0	0	0	0	0	1	15319	1683	59	5		5	ST6GALNAC6	9	130658581	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24451	130658581	10554850	595	3957										
DPM2	0	genome.wustl.edu	37	chr9	130698723	130698723	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaacaggaaaaccccacgggTgagttcggggcaagcagctt	14	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	130698723	130698723	T	G	SNP	DPM2	ENST00000373110	human	ensembl	69_37n	-1	putative	missense	c.305	p.H102P	0.000	NULL	pfam_DPM2	-	no_errors	DPM2	HGNC	ENSG00000136908	51	0	0	18	5	21.74	-	-	-	G	130698723	T	G	130698723	3	3	67	1	0	0	0	0	1	0	0	0	4760	1711	59	5		5	DPM2	9	130698723	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	40142	130698723	10514708	596	3958										
CIZ1	0	genome.wustl.edu	37	chr9	130928520	130928520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgaggtagtgggggctgggAgggtcgagccgtcaccttgc	19	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	130928520	130928520	A	G	SNP	CIZ1	ENST00000538431	human	ensembl	69_37n	-1	known	missense	c.2731	p.S911P	0.014	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337	108	1	0.91	110	23	17.16	-	-	-	G	130928520	A	G	130928520	3	3	67	1	0	0	0	0	1	0	0	0	3471	304	11	5	47	5	CIZ1	9	130928520	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	229797	130928520	10284911	597	3959										
GOLGA2	0	genome.wustl.edu	37	chr9	131020257	131020257	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgccaggagagactcattcAcctgcagcttctccatggcc	9	14	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	131020257	131020257	A	C	SNP	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	splice_site	c.2427+2	e22+2	1.000	-	-	-	no_errors	GOLGA2	HGNC	ENSG00000167110	42	0	0	29	11	27.5	-	-	-	C	131020257	A	C	131020257	5	2	67	1	0	0	0	0	0	0	1	0	6604	173	6	5	599	5	GOLGA2	9	131020257	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	91737	131020257	10193174	598	3960										
CERCAM	0	genome.wustl.edu	37	chr9	131196406	131196406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccaggggcctggcccgggTcctggtgtttgaggatgacg	18	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	131196406	131196406	T	G	SNP	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	missense	c.1229	p.V410G	0.808	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	120	1	0.82	73	22	22.92	-	-	-	G	131196406	T	G	131196406	3	3	67	1	0	0	0	0	1	0	0	0	3295	1667	58	5	1267	5	CERCAM	9	131196406	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	176149	131196406	10017025	599	3961										
GLE1	0	genome.wustl.edu	37	chr9	131300346	131300346	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccttgtcagatgtgacagccAccctcctctttgacttcctg	7	15	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	131300346	131300346	A	C	SNP	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	missense	c.1858	p.T620P	1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	142	0	0	138	24	14.81	-	-	-	C	131300346	A	C	131300346	3	2	67	1	0	0	0	0	1	0	0	0	6487	159	6	5	1908	5	GLE1	9	131300346	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	103940	131300346	9913085	600	3962										
FUBP3	0	genome.wustl.edu	37	chr9	133498199	133498199	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggattcagtttaaaccaggTgggtatgatgatttaaaaat	10	3	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	133498199	133498199	T	G	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	splice_site	c.874+2	e10+2	1.000	-	-	-	no_errors	FUBP3	HGNC	ENSG00000107164	252	0	0	233	31	11.74	-	-	-	G	133498199	T	G	133498199	5	3	67	1	0	0	0	0	0	0	1	0	6142	1710	59	5	914	5	FUBP3	9	133498199	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2197853	133498199	7715232	601	3963										
FUBP3	0	genome.wustl.edu	37	chr9	133501831	133501831	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggagcgtgggagcccctggTggcgtccaggagataacata	16	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	133501831	133501831	T	G	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	silent	c.1056	p.G352	0.945	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	102	1	0.96	56	15	21.13	-	-	-	G	133501831	T	G	133501831	2	3	67	1	0	0	0	0	0	0	0	1	6142	1683	59	5		5	FUBP3	9	133501831	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3632	133501831	7711600	602	3964										
CEL	0	genome.wustl.edu	37	chr9	135939814	135939814	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgccgtgtacacagaaggTgggttcgtggaaggcgtcaa	17	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	135939814	135939814	T	G	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	silent	c.99	p.G33	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	118	1	0.82	100	31	23.48	-	-	-	G	135939814	T	G	135939814	2	3	67	1	0	0	0	0	0	0	0	1	3238	1683	59	5		5	CEL	9	135939814	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2437983	135939814	5273617	603	3965										
MED22	0	genome.wustl.edu	37	chr9	136213393	136213393	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgggccaccccacccccAccttggcggtcttgatgatc	11	16	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	136213393	136213393	A	C	SNP	MED22	ENST00000343730	human	ensembl	69_37n	-1	known	splice_site	c.123+2	e1+2	0.998	-	-	-	no_errors	MED22	HGNC	ENSG00000148297	122	0	0	149	23	13.37	-	-	-	C	136213393	A	C	136213393	5	2	67	1	0	0	0	0	0	0	1	0	9511	173	6	5	503	5	MED22	9	136213393	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	273579	136213393	5000038	604	3966										
C9orf96	0	genome.wustl.edu	37	chr9	136268878	136268878	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccggacctcatcagccaggTgttggccacctaccctgcgg	11	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	136268878	136268878	T	G	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	missense	c.1529	p.V510G	0.006	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	68	0	0	37	7	15.56	-	-	-	G	136268878	T	G	136268878	3	3	67	1	0	0	0	0	1	0	0	0	2533	1696	59	5	1587	5	C9orf96	9	136268878	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	55485	136268878	4944553	605	3967										
SLC2A6	0	genome.wustl.edu	37	chr9	136343518	136343518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcgaaggtggccaggaacAcccttttgttctgcagggtc	14	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	136343518	136343518	A	C	SNP	SLC2A6	ENST00000371899	human	ensembl	69_37n	-1	known	missense	c.113	p.V38G	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326	164	1	0.59	98	18	15.52	-	-	-	C	136343518	A	C	136343518	3	2	67	1	0	0	0	0	1	0	0	0	14638	159	6	5	1446	5	SLC2A6	9	136343518	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	74640	136343518	4869913	606	3968										
BRD3	0	genome.wustl.edu	37	chr9	136905231	136905231	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgcttggcaggcggagccAccttggccttcttctcttcc	10	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	136905231	136905231	A	C	SNP	BRD3	ENST00000303407	human	ensembl	69_37n	-1	known	missense	c.1568	p.V523G	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925	75	0	0	73	17	18.48	-	-	-	C	136905231	A	C	136905231	3	2	67	1	0	0	0	0	1	0	0	0	1511	159	6	5	628	5	BRD3	9	136905231	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	561713	136905231	4308200	607	3969										
RXRA	0	genome.wustl.edu	37	chr9	137328499	137328499	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgcccacccgttctggccAccctgcctggacgccagctg	11	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	137328499	137328499	A	C	SNP	RXRA	ENST00000356384	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	37	0	0	30	17	35.42	-	-	-	C	137328499	A	C	137328499	1	2	67	0	1	0	0	0	0	0	0	0	13849	174	6	5		5	RXRA	9	137328499	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	423268	137328499	3884932	608	3970										
LCN9	0	genome.wustl.edu	37	chr9	138556570	138556570	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcctggctggcttccagggTgcagggggagtgtgtggctg	19	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	138556570	138556570	T	G	SNP	LCN9	ENST00000277526	human	ensembl	69_37n	1	known	missense	c.236	p.V79G	0.336	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Odour-bd,prints_Blactoglobulin	-	no_errors	LCN9	HGNC	ENSG00000148386	152	1	0.65	106	24	17.91	-	-	-	G	138556570	T	G	138556570	3	3	67	1	0	0	0	0	1	0	0	0	8741	1696	59	5	246	5	LCN9	9	138556570	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1228071	138556570	2656861	609	3971										
QSOX2	0	genome.wustl.edu	37	chr9	139118628	139118628	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgatactcacccggaaggTggggtagaagtggatgtcgt	16	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	139118628	139118628	T	G	SNP	QSOX2	ENST00000358701	human	ensembl	69_37n	-1	known	missense	c.421	p.T141P	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661	108	0	0	107	22	17.05	-	-	-	G	139118628	T	G	139118628	3	3	67	1	0	0	0	0	1	0	0	0	12967	1696	59	5	1719	5	QSOX2	9	139118628	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	562058	139118628	2094803	610	3972										
C9orf142	0	genome.wustl.edu	37	chr9	139888233	139888233	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccagtaagaaaccagctggTggcgtggacttcgatgagac	13	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	139888233	139888233	T	G	SNP	C9orf142	ENST00000371620	human	ensembl	69_37n	1	known	silent	c.591	p.G197	0.569	NULL	NULL	-	no_errors	C9orf142	HGNC	ENSG00000148362	132	0	0	132	20	13.07	-	-	-	G	139888233	T	G	139888233	2	3	67	1	0	0	0	0	0	0	0	1	2486	1683	59	5		5	C9orf142	9	139888233	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	769605	139888233	1325198	611	3973										
C9orf142	0	genome.wustl.edu	37	chr9	139888352	139888352	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccccccgccaccacctccAcctgcctgtcctgggccagg	9	22	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	9	139888352	139888352	A	C	SNP	C9orf142	ENST00000463765	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	C9orf142	HGNC	ENSG00000148362	69	0	0	24	13	33.33	-	-	-	C	139888352	A	C	139888352	1	2	67	0	1	0	0	0	0	0	0	0	2486	174	6	5		5	C9orf142	9	139888352	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	119	139888352	1325079	612	3974										
WDR37	0	genome.wustl.edu	37	chr10	1142162	1142162	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tacgcggtgcagctgccgacAccccagcctgttgctgacac	11	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	1142162	1142162	A	C	SNP	WDR37	ENST00000263150	human	ensembl	69_37n	1	known	silent	c.702	p.T234	0.057	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	169	0	0	118	20	14.49	-	-	-	C	1142162	A	C	1142162	2	2	67	1	0	0	0	0	0	0	0	1	17388	146	6	5		5	WDR37	10	1142162	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		1142162	134392585	613	3975										
WDR37	0	genome.wustl.edu	37	chr10	1175216	1175216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accccgtgtgcaatctgttcAcctgtgggtttgaccggcaa	11	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	1175216	1175216	A	C	SNP	WDR37	ENST00000263150	human	ensembl	69_37n	1	known	missense	c.1417	p.T473P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	122	1	0.8	73	17	18.89	-	-	-	C	1175216	A	C	1175216	3	2	67	1	0	0	0	0	1	0	0	0	17388	159	6	5	1467	5	WDR37	10	1175216	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	33054	1175216	134359531	614	3976										
PITRM1	0	genome.wustl.edu	37	chr10	3197854	3197854	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcttgagcttcgtggcttccAcctgtgcctgcttctcgtga	11	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	3197854	3197854	A	C	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.1550	p.V517G	0.975	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	141	0	0	137	21	13.21	-	-	-	C	3197854	A	C	3197854	3	2	67	1	0	0	0	0	1	0	0	0	12027	159	6	5	1619	5	PITRM1	10	3197854	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2022638	3197854	132336893	615	3977										
FBXO18	0	genome.wustl.edu	37	chr10	5948251	5948251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagtaaccaggctaccgggAccagccggtgggatggagtt	16	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	5948251	5948251	A	C	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	missense	c.562	p.T188P	0.013	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	50	0	0	19	8	28.57	-	-	-	C	5948251	A	C	5948251	3	2	67	1	0	0	0	0	1	0	0	0	5777	275	10	5	581	5	FBXO18	10	5948251	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2750397	5948251	129586496	616	3978										
PFKFB3	0	genome.wustl.edu	37	chr10	6268269	6268269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgaggagcatgtggcctccAcctcggccgccctgcccagc	12	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	6268269	6268269	A	C	SNP	PFKFB3	ENST00000540253	human	ensembl	69_37n	1	known	missense	c.1498	p.T500P	0.981	NULL	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525	79	0	0	49	11	18.33	-	-	-	C	6268269	A	C	6268269	3	2	67	1	0	0	0	0	1	0	0	0	11836	159	6	5	1530	5	PFKFB3	10	6268269	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	320018	6268269	129266478	617	3979										
GATA3	0	genome.wustl.edu	37	chr10	8111546	8111547	+	Frame_Shift_Ins	INS	-	-	TACT													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaatgcctgtgggctctacINStacaagcttcacaatgtaag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	8111546	8111547	-	TACT	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1035_1036	p.K346fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	166	0	0	92	34	26.98	-	-	-	TACT	8111547	-	TACT	8111546	7	5	67	1	0	1	1	0	0	0	0	0	6305	576	20	0	1049	0	GATA3	10	8111546	Frame_Shift_Ins	INS	-	TCGA-A2-A0T5-01A-21D-A099-09	1843277	8111546	127423201	618	3980										
SEC61A2	0	genome.wustl.edu	37	chr10	12197867	12197867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatttccctctttattgccAccaacatctgtgagaccatt	6	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	12197867	12197867	A	C	SNP	SEC61A2	ENST00000298428	human	ensembl	69_37n	1	known	missense	c.553	p.T185P	1.000	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A2	HGNC	ENSG00000065665	184	0	0	258	30	10.42	-	-	-	C	12197867	A	C	12197867	3	2	67	1	0	0	0	0	1	0	0	0	14089	159	6	5	579	5	SEC61A2	10	12197867	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4086321	12197867	123336880	619	3981										
MCM10	0	genome.wustl.edu	37	chr10	13231004	13231004	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaagtttgcccgcagaggcAccagcctcaaagaacggctg	12	12	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	13231004	13231004	A	C	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.1342	p.T448P	0.000	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	106	0	0	60	17	21.79	-	-	-	C	13231004	A	C	13231004	3	2	67	1	0	0	0	0	1	0	0	0	9456	159	6	5	1376	5	MCM10	10	13231004	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1033137	13231004	122303743	620	3982										
ITGA8	0	genome.wustl.edu	37	chr10	15760864	15760864	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacgatatcgggctggctggTgttggctttgggcgccccca	15	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	15760864	15760864	T	G	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.244	p.T82P	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	106	1	0.93	40	12	23.08	-	-	-	G	15760864	T	G	15760864	3	3	67	1	0	0	0	0	1	0	0	0	7936	1696	59	5	3063	5	ITGA8	10	15760864	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2529860	15760864	119773883	621	3983										
VIM	0	genome.wustl.edu	37	chr10	17272749	17272749	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actcgcagccgcctgaccccAcccaacacaacccacgagca	6	21	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	17272749	17272749	A	C	SNP	VIM	ENST00000485947	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.120	-	-	-	no_errors	VIM	HGNC	ENSG00000026025	118	0	0	95	17	15.04	-	-	-	C	17272749	A	C	17272749	1	2	67	0	1	0	0	0	0	0	0	0	17263	174	6	5		5	VIM	10	17272749	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1511885	17272749	118261998	622	3984										
STAM	0	genome.wustl.edu	37	chr10	17756740	17756740	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaggcagccaacagccaccTcagccacagcaaccatattc	8	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	17756740	17756740	T	C	SNP	STAM	ENST00000377524	human	ensembl	69_37n	1	known	silent	c.1584	p.P528	0.996	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	143	1	0.69	77	13	14.29	-	-	-	C	17756740	T	C	17756740	2	2	67	1	0	0	0	0	0	0	0	1	15339	1538	54	5		5	STAM	10	17756740	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	483991	17756740	117778007	623	3985										
SLC39A12	0	genome.wustl.edu	37	chr10	18242369	18242369	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttctctctgctggtgaccAcccaccccacaaccactcaa	6	18	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	18242369	18242369	A	C	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.164	p.H55P	0.017	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	152	0	0	110	31	21.99	-	-	-	C	18242369	A	C	18242369	3	2	67	1	0	0	0	0	1	0	0	0	14704	159	6	5	166	5	SLC39A12	10	18242369	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	485629	18242369	117292378	624	3986										
PLXDC2	0	genome.wustl.edu	37	chr10	20290784	20290784	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacacgcgtacagccacaggTggaaaagaaacttggacttt	10	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	20290784	20290784	T	G	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	missense	c.193	p.W65G	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	111	0	0	63	16	20.25	-	-	-	G	20290784	T	G	20290784	3	3	67	1	0	0	0	0	1	0	0	0	12192	1696	59	5	199	5	PLXDC2	10	20290784	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2048415	20290784	115243963	625	3987										
NEBL	0	genome.wustl.edu	37	chr10	21461251	21461251	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agttcttcaaaacaggcaggTccactggctctcaagctctg	9	12	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	21461251	21461251	T	G	SNP	NEBL	ENST00000464278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NEBL	HGNC	ENSG00000078114	160	0	0	130	23	15.03	-	-	-	G	21461251	T	G	21461251	1	3	67	0	1	0	0	0	0	0	0	0	10375	1682	58	5		5	NEBL	10	21461251	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1170467	21461251	114073496	626	3988										
KIAA1217	0	genome.wustl.edu	37	chr10	24790378	24790378	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgcctcccagccagcctccAcctgtgggcacctcagccat	9	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	24790378	24790378	A	C	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.1905	p.P635	0.004	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	57	0	0	46	16	25.81	-	-	-	C	24790378	A	C	24790378	2	2	67	1	0	0	0	0	0	0	0	1	8268	146	6	5		5	KIAA1217	10	24790378	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3329127	24790378	110744369	627	3989										
SVIL	0	genome.wustl.edu	37	chr10	29818674	29818674	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcagtggtgatgggctgggTgagggacctgtcctgcagac	17	8	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	29818674	29818674	T	G	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.2206	p.T736P	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	192	1	0.52	144	28	16.28	-	-	-	G	29818674	T	G	29818674	3	3	67	1	0	0	0	0	1	0	0	0	15512	1696	59	5	4546	5	SVIL	10	29818674	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5028296	29818674	105716073	628	3990										
KIAA1462	0	genome.wustl.edu	37	chr10	30317151	30317151	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttttggaactccgttctcccAcccatgcttcctgtgagggc	9	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	30317151	30317151	A	C	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	silent	c.1926	p.G642	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	255	2	0.78	200	36	15.13	-	-	-	C	30317151	A	C	30317151	2	2	67	1	0	0	0	0	0	0	0	1	8286	146	6	5		5	KIAA1462	10	30317151	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	498477	30317151	105217596	629	3991										
ZNF438	0	genome.wustl.edu	37	chr10	31138837	31138837	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtttgtacaggagttcagggTggtgaggtggggaaggggac							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	31138837	31138837	T	G	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.497	p.H166P	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	306	3	0.96	357	46	11.39	-	-	-	G	31138837	T	G	31138837	3	3	67	1	0	0	0	0	1	0	0	0	18006	1696	59	5	1997	5	ZNF438	10	31138837	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	821686	31138837	104395910	630	3992	32	2								
ZNF438	0	genome.wustl.edu	37	chr10	31138845	31138845	+	Silent	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggagttcagggtggtgaggTggggaaggggacatctgagg							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	31138845	31138845	T	G	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	silent	c.489	p.P163	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	318	2	0.62	365	55	13.06	-	-	-	G	31138845	T	G	31138845	2	3	67	1	0	0	0	0	0	0	0	1	18006	1683	59	5		5	ZNF438	10	31138845	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8	31138845	104395902	631	3993	32	2								
PARD3	0	genome.wustl.edu	37	chr10	34671590	34671590	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggtggttttcccgaggggTgtgcgctatgaggtagtctt	16	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	34671590	34671590	T	G	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.1277	p.H426P	0.285	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	136	0	0	120	28	18.67	-	-	-	G	34671590	T	G	34671590	3	3	67	1	0	0	0	0	1	0	0	0	11516	1696	59	5	2896	5	PARD3	10	34671590	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3532745	34671590	100863157	632	3994										
RET	0	genome.wustl.edu	37	chr10	43607604	43607604	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtcagcaagagacggctggAgtgtgaggagtgtggcggcc	19	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	43607604	43607604	A	G	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.1580	p.E527G	1.000	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	173	0	0	126	20	13.7	-	-	-	G	43607604	A	G	43607604	3	3	67	1	0	0	0	0	1	0	0	0	13318	304	11	5	1610	5	RET	10	43607604	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8936014	43607604	91927143	633	3995										
RBP3	0	genome.wustl.edu	37	chr10	48382140	48382140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctggcagcccccactggtcAcctccccaatgaccagggcc	10	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	48382140	48382140	A	C	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.3509	p.V1170G	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	90	0	0	45	18	28.57	-	-	-	C	48382140	A	C	48382140	3	2	67	1	0	0	0	0	1	0	0	0	13240	159	6	5	238	5	RBP3	10	48382140	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4774536	48382140	87152607	634	3996										
SLC16A9	0	genome.wustl.edu	37	chr10	61444009	61444009	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaaggagacaaacacaatcAcccagccccatccaccgtca	7	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	61444009	61444009	A	C	SNP	SLC16A9	ENST00000395347	human	ensembl	69_37n	-1	known	missense	c.41	p.V14G	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449	206	1	0.48	145	40	21.62	-	-	-	C	61444009	A	C	61444009	3	2	67	1	0	0	0	0	1	0	0	0	14504	159	6	5	1508	5	SLC16A9	10	61444009	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13061869	61444009	74090738	635	3997										
HNRNPH3	0	genome.wustl.edu	37	chr10	70101400	70101400	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaggcggctctggcatgggAggttctggaatgggaggcta	20	6	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	70101400	70101400	A	G	SNP	HNRNPH3	ENST00000265866	human	ensembl	69_37n	1	known	silent	c.834	p.G278	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746	313	2	0.63	318	37	10.36	-	-	-	G	70101400	A	G	70101400	2	3	67	1	0	0	0	0	0	0	0	1	7319	291	11	5		5	HNRNPH3	10	70101400	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8657391	70101400	65433347	636	3998										
COL13A1	0	genome.wustl.edu	37	chr10	71658488	71658488	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aattcagtgcgactggctccAcccccggtcataaaaaggcg	10	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	71658488	71658488	A	C	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	silent	c.750	p.P250	0.979	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	150	1	0.65	242	34	12.27	-	-	-	C	71658488	A	C	71658488	2	2	67	1	0	0	0	0	0	0	0	1	3700	146	6	5		5	COL13A1	10	71658488	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1557088	71658488	63876259	637	3999										
UNC5B	0	genome.wustl.edu	37	chr10	73050837	73050837	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccctgactggtggtttccAccccgtcaactttaagacgg	10	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	73050837	73050837	A	C	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	missense	c.1265	p.H422P	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	121	0	0	66	24	26.37	-	-	-	C	73050837	A	C	73050837	3	2	67	1	0	0	0	0	1	0	0	0	17089	159	6	5	1299	5	UNC5B	10	73050837	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1392349	73050837	62483910	638	4000										
CDH23	0	genome.wustl.edu	37	chr10	73551041	73551041	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgacaatgacaaccggcccAcctttagccctgccaccctc	6	18	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	73551041	73551041	A	C	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.6211	p.T2071P	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	113	0	0	85	14	14.14	-	-	-	C	73551041	A	C	73551041	3	2	67	1	0	0	0	0	1	0	0	0	3137	159	6	5	6729	5	CDH23	10	73551041	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	500204	73551041	61983706	639	4001										
SPOCK2	0	genome.wustl.edu	37	chr10	73831962	73831962	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtagccctgggcaatgcacAccttgtggcggctgcacttc	13	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	73831962	73831962	A	C	SNP	SPOCK2	ENST00000317376	human	ensembl	69_37n	-1	known	missense	c.299	p.V100G	1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742	146	1	0.66	151	23	12.99	-	-	-	C	73831962	A	C	73831962	3	2	67	1	0	0	0	0	1	0	0	0	15171	159	6	5	1007	5	SPOCK2	10	73831962	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	280921	73831962	61702785	640	4002										
ANAPC16	0	genome.wustl.edu	37	chr10	73983705	73983705	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcatcatcctcctcagctggTggggtcagtggaagttctgt	12	10	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	73983705	73983705	T	G	SNP	ANAPC16	ENST00000299381	human	ensembl	69_37n	1	known	silent	c.33	p.G11	0.954	NULL	NULL	-	no_errors	ANAPC16	HGNC	ENSG00000166295	176	1	0.56	153	21	12.07	-	-	-	G	73983705	T	G	73983705	2	3	67	1	0	0	0	0	0	0	0	1	602	1683	59	5		5	ANAPC16	10	73983705	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	151743	73983705	61551042	641	4003										
NUDT13	0	genome.wustl.edu	37	chr10	74886476	74886476	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgagaagttgcagaagaggTgggattggaggtggaaagcc	18	5	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	74886476	74886476	T	G	SNP	NUDT13	ENST00000357321	human	ensembl	69_37n	1	known	missense	c.749	p.V250G	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321	173	0	0	148	21	12.35	-	-	-	G	74886476	T	G	74886476	3	3	67	1	0	0	0	0	1	0	0	0	10802	1696	59	5	775	5	NUDT13	10	74886476	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	902771	74886476	60648271	642	4004										
USP54	0	genome.wustl.edu	37	chr10	75296096	75296096	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttggggaggcaggtcctgggTggaaactggggtaccctggg	20	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	75296096	75296096	T	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.1075	p.T359P	0.984	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	142	1	0.7	120	21	14.89	-	-	-	G	75296096	T	G	75296096	3	3	67	1	0	0	0	0	1	0	0	0	17182	1696	59	5	4035	5	USP54	10	75296096	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	409620	75296096	60238651	643	4005										
KIAA0913	0	genome.wustl.edu	37	chr10	75559187	75559187	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacccagctcaccctgcccAccccatgcctcacatgcccc	4	24	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	75559187	75559187	A	C	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.4604	p.H1535P	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	89	0	0	120	30	20	-	-	-	C	75559187	A	C	75559187	3	2	67	1	0	0	0	0	1	0	0	0	8252	159	6	5	4686	5	KIAA0913	10	75559187	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	263091	75559187	59975560	644	4006										
VCL	0	genome.wustl.edu	37	chr10	75849804	75849804	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcttgcagatccaaatggTggaccggaaggagaagagca	15	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	75849804	75849804	T	G	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	silent	c.1200	p.G400	0.998	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	181	0	0	116	26	18.18	-	-	-	G	75849804	T	G	75849804	2	3	67	1	0	0	0	0	0	0	0	1	17236	1683	59	5		5	VCL	10	75849804	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	290617	75849804	59684943	645	4007										
ZMIZ1	0	genome.wustl.edu	37	chr10	81067261	81067261	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgggcccccccagctctcccAccccccggacatgcccaaca	7	24	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	81067261	81067261	A	C	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.2768	p.H923P	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	98	1	1	86	17	16.5	-	-	-	C	81067261	A	C	81067261	3	2	67	1	0	0	0	0	1	0	0	0	17792	159	6	5	2842	5	ZMIZ1	10	81067261	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5217457	81067261	54467486	646	4008										
CDHR1	0	genome.wustl.edu	37	chr10	85968079	85968079	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtccatgaatgagcacccAccccagggagagatcctgcg	11	14	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	85968079	85968079	A	C	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	silent	c.1113	p.P371	0.037	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	136	0	0	80	18	18.18	-	-	-	C	85968079	A	C	85968079	2	2	67	1	0	0	0	0	0	0	0	1	3147	146	6	5		5	CDHR1	10	85968079	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4900818	85968079	49566668	647	4009										
GRID1	0	genome.wustl.edu	37	chr10	87966206	87966206	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acatcattgaggcggacgggTggtctcgaagccagtgtgta	15	8	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	87966206	87966206	T	G	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	0.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	124	0	0	65	13	16.67	-	-	-	G	87966206	T	G	87966206	2	3	67	1	0	0	0	0	0	0	0	1	6822	1683	59	5		5	GRID1	10	87966206	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1998127	87966206	47568541	648	4010										
CYP2C8	0	genome.wustl.edu	37	chr10	96796918	96796918	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagcagatctggtatgagggTggcagagaaacaatcccttt	12	7	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	96796918	96796918	T	G	SNP	CYP2C8	ENST00000371270	human	ensembl	69_37n	-1	known	silent	c.1440	p.P480	0.088	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115	347	3	0.85	190	37	16.23	-	-	-	G	96796918	T	G	96796918	2	3	67	1	0	0	0	0	0	0	0	1	4198	1683	59	5		5	CYP2C8	10	96796918	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8830712	96796918	38737829	649	4011										
SORBS1	0	genome.wustl.edu	37	chr10	97074670	97074670	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taaccttagacaggcttgggTtttaaacacaacacttctct	6	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	97074670	97074670	T	G	SNP	SORBS1	ENST00000470320	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SORBS1	HGNC	ENSG00000095637	38	0	0	22	10	31.25	-	-	-	G	97074670	T	G	97074670	1	3	67	0	1	0	0	0	0	0	0	0	15016	1740	60	5		5	SORBS1	10	97074670	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	277752	97074670	38460077	650	4012										
TLL2	0	genome.wustl.edu	37	chr10	98156999	98156999	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctgctgctgcggaactccAcccagagccggctgtccgtg	13	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	98156999	98156999	A	C	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.1328	p.V443G	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	96	0	0	55	10	15.38	-	-	-	C	98156999	A	C	98156999	3	2	67	1	0	0	0	0	1	0	0	0	16041	159	6	5	1763	5	TLL2	10	98156999	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1082329	98156999	37377748	651	4013										
PIK3AP1	0	genome.wustl.edu	37	chr10	98363713	98363713	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacccctaggacaggataggTggggtggagtcccagctctc	15	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	98363713	98363713	T	G	SNP	PIK3AP1	ENST00000489982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	159	0	0	96	26	21.31	-	-	-	G	98363713	T	G	98363713	1	3	67	0	1	0	0	0	0	0	0	0	11982	1711	59	5		5	PIK3AP1	10	98363713	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	206714	98363713	37171034	652	4014										
RRP12	0	genome.wustl.edu	37	chr10	99118365	99118365	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcctttcttcttcacatcAccttttgctttctgcttgcc	5	15	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	99118365	99118365	A	C	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	silent	c.3720	p.G1240	0.957	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	156	0	0	122	20	14.08	-	-	-	C	99118365	A	C	99118365	2	2	67	1	0	0	0	0	0	0	0	1	13772	146	6	5		5	RRP12	10	99118365	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	754652	99118365	36416382	653	4015										
ANKRD2	0	genome.wustl.edu	37	chr10	99342115	99342115	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagtccggacagggcaggTggagattgtggagcactttc	17	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	99342115	99342115	T	G	SNP	ANKRD2	ENST00000307518	human	ensembl	69_37n	1	known	missense	c.779	p.V260G	0.664	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD2	HGNC	ENSG00000165887	121	0	0	66	14	17.07	-	-	-	G	99342115	T	G	99342115	3	3	67	1	0	0	0	0	1	0	0	0	647	1696	59	5	805	5	ANKRD2	10	99342115	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	223750	99342115	36192632	654	4016										
ENTPD7	0	genome.wustl.edu	37	chr10	101464355	101464355	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcggctacgccgaattcaccAccgacaaacacgagcctcag	9	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	101464355	101464355	A	C	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.1730	p.H577P	0.980	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	153	0	0	91	29	23.77	-	-	-	C	101464355	A	C	101464355	3	2	67	1	0	0	0	0	1	0	0	0	5181	159	6	5	1776	5	ENTPD7	10	101464355	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2122240	101464355	34070392	655	4017										
NDUFB8	0	genome.wustl.edu	37	chr10	102286175	102286175	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacaggctggtagacagggTacacgtcccccacccagcac	10	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	102286175	102286175	T	G	SNP	NDUFB8	ENST00000299166	human	ensembl	69_37n	-1	known	missense	c.449	p.Y150S	0.979	pfam_NADH_UbQ_OxRdtase_ASHI_su,pirsf_NADH_UbQ_OxRdtase_b-cplx_su8	pfam_NADH_UbQ_OxRdtase_ASHI_su,pirsf_NADH_UbQ_OxRdtase_b-cplx_su8	-	no_errors	NDUFB8	HGNC	ENSG00000166136	133	1	0.74	66	13	16.46	-	-	-	G	102286175	T	G	102286175	3	3	67	1	0	0	0	0	1	0	0	0	10359	1638	57	5	119	5	NDUFB8	10	102286175	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	821820	102286175	33248572	656	4018										
SFXN3	0	genome.wustl.edu	37	chr10	102798332	102798332	+	RNA	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgatgggatagagctatggTgggtgaaatggggtgacagt							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	102798332	102798332	T	G	SNP	SFXN3	ENST00000466982	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SFXN3	HGNC	ENSG00000107819	290	1	0.34	243	40	14.08	-	-	-	G	102798332	T	G	102798332	1	3	67	0	1	0	0	0	0	0	0	0	14284	1711	59	5		5	SFXN3	10	102798332	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	512157	102798332	32736415	657	4019	33	2								
SFXN3	0	genome.wustl.edu	37	chr10	102798336	102798336	+	RNA	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggatagagctatggtgggTgaaatggggtgacagtgagg							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	102798336	102798336	T	G	SNP	SFXN3	ENST00000466982	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SFXN3	HGNC	ENSG00000107819	289	2	0.68	223	60	21.05	-	-	-	G	102798336	T	G	102798336	1	3	67	0	1	0	0	0	0	0	0	0	14284	1711	59	5		5	SFXN3	10	102798336	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4	102798336	32736411	658	4020	33	2								
POLL	0	genome.wustl.edu	37	chr10	103345129	103345129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaggagacacaggcctggTgggaggaggaggaggagaaa	22	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	103345129	103345129	T	G	SNP	POLL	ENST00000299206	human	ensembl	69_37n	-1	known	missense	c.517	p.T173P	0.000	NULL	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLL	HGNC	ENSG00000166169	295	3	1	245	31	11.19	-	-	-	G	103345129	T	G	103345129	3	3	67	1	0	0	0	0	1	0	0	0	12279	1696	59	5	1234	5	POLL	10	103345129	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	546793	103345129	32189618	659	4021										
DPCD	0	genome.wustl.edu	37	chr10	103368704	103368704	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgatcatctctgtaagattcAcccagacttcttggacactg	7	11	4	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	103368704	103368704	A	C	SNP	DPCD	ENST00000475443	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPCD	HGNC	ENSG00000166171	99	0	0	98	16	14.04	-	-	-	C	103368704	A	C	103368704	1	2	67	0	1	0	0	0	0	0	0	0	4746	174	6	5		5	DPCD	10	103368704	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	23575	103368704	32166043	660	4022										
PPRC1	0	genome.wustl.edu	37	chr10	103900659	103900659	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcccttgtcttgtcatcccAccagccccagccaagaagac	6	17	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	103900659	103900659	A	C	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	silent	c.2394	p.P798	0.021	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	116	0	0	54	15	21.74	-	-	-	C	103900659	A	C	103900659	2	2	67	1	0	0	0	0	0	0	0	1	12487	146	6	5		5	PPRC1	10	103900659	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	531955	103900659	31634088	661	4023										
CYP17A1	0	genome.wustl.edu	37	chr10	104596883	104596883	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcacctccttggccagctggTggtggccgacaatcactgta	12	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	104596883	104596883	T	G	SNP	CYP17A1	ENST00000369887	human	ensembl	69_37n	-1	known	missense	c.236	p.H79P	0.972	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795	127	0	0	106	22	17.05	-	-	-	G	104596883	T	G	104596883	3	3	67	1	0	0	0	0	1	0	0	0	4178	1696	59	5	1322	5	CYP17A1	10	104596883	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	696224	104596883	30937864	662	4024										
VTI1A	0	genome.wustl.edu	37	chr10	114298039	114298039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgataacacagagaggctggAaaggtcatctcggagactag	13	8	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	114298039	114298039	A	G	SNP	VTI1A	ENST00000393077	human	ensembl	69_37n	1	known	missense	c.377	p.E126G	1.000	smart_T_SNARE_dom	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1A	HGNC	ENSG00000151532	190	1	0.52	68	13	15.85	-	-	-	G	114298039	A	G	114298039	3	3	67	1	0	0	0	0	1	0	0	0	17332	246	9	5	395	5	VTI1A	10	114298039	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9701156	114298039	21236708	663	4025										
BTBD16	0	genome.wustl.edu	37	chr10	124036351	124036351	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcactggctcaaccaaccggTggcgtttgcccaaacagcct	9	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	124036351	124036351	T	G	SNP	BTBD16	ENST00000368994	human	ensembl	69_37n	1	known	missense	c.67	p.W23G	1.000	NULL	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152	186	0	0	112	24	17.65	-	-	-	G	124036351	T	G	124036351	3	3	67	1	0	0	0	0	1	0	0	0	1549	1696	59	5	70	5	BTBD16	10	124036351	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9738312	124036351	11498396	664	4026										
DMBT1	0	genome.wustl.edu	37	chr10	124335962	124335962	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgaatggagatggcaggTgtcagggccgagtggagatc	19	5	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	124335962	124335962	T	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.331	p.C111G	0.998	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	199	2	0.99	162	27	14.29	-	-	-	G	124335962	T	G	124335962	3	3	67	1	0	0	0	0	1	0	0	0	4613	1696	59	5	357	5	DMBT1	10	124335962	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	299611	124335962	11198785	665	4027										
CHST15	0	genome.wustl.edu	37	chr10	125804300	125804300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttgcgcagggcgtcgaaggTggagcggaagcgcttggagt	19	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	125804300	125804300	T	G	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	missense	c.682	p.T228P	0.998	NULL	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	142	1	0.67	122	17	12.06	-	-	-	G	125804300	T	G	125804300	3	3	67	1	0	0	0	0	1	0	0	0	3432	1696	59	5	1027	5	CHST15	10	125804300	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1468338	125804300	9730447	666	4028										
CTBP2	0	genome.wustl.edu	37	chr10	126714661	126714661	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgtattacttggttctggTgcaagcatggtggacacgat	13	6	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	126714661	126714661	T	G	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	silent	c.1668	p.A556	0.023	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	40	0	0	30	7	18.92	-	-	-	G	126714661	T	G	126714661	2	3	67	1	0	0	0	0	0	0	0	1	4030	1683	59	5		5	CTBP2	10	126714661	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	910361	126714661	8820086	667	4029										
DOCK1	0	genome.wustl.edu	37	chr10	128810561	128810561	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcccgtttttcacccagggTggcaggggagaatgacttcc	12	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	128810561	128810561	T	G	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.1061	p.V354G	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	131	0	0	111	26	18.98	-	-	-	G	128810561	T	G	128810561	3	3	67	1	0	0	0	0	1	0	0	0	4719	1696	59	5	1107	5	DOCK1	10	128810561	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2095900	128810561	6724186	668	4030										
TCERG1L	0	genome.wustl.edu	37	chr10	133107551	133107551	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctagggacggagaatggccAccaaacagccactgcaagcc	11	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	10	133107551	133107551	A	C	SNP	TCERG1L	ENST00000368642	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	0.044	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1L	HGNC	ENSG00000176769	101	0	0	39	19	32.76	-	-	-	C	133107551	A	C	133107551	2	2	67	1	0	0	0	0	0	0	0	1	15781	146	6	5		5	TCERG1L	10	133107551	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4296990	133107551	2427196	669	4031										
SCGB1C1	0	genome.wustl.edu	37	chr11	193136	193136	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctcctgctggtggccctcAccctgttctgcatctgccgt	9	18	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	193136	193136	A	C	SNP	SCGB1C1	ENST00000342878	human	ensembl	69_37n	1	known	missense	c.37	p.T13P	0.004	pfam_Uteroglobin-like_superfam	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB1C1	HGNC	ENSG00000188076	121	0	0	108	20	15.5	-	-	-	C	193136	A	C	193136	3	2	67	1	0	0	0	0	1	0	0	0	13982	159	6	5	39	5	SCGB1C1	11	193136	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		193136	134813380	670	4032										
PHRF1	0	genome.wustl.edu	37	chr11	609477	609477	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccacccctgccagagggcAcccaggagccacatttgctc	9	19	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	609477	609477	A	C	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	missense	c.4021	p.T1341P	0.115	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	34	0	0	19	8	29.63	-	-	-	C	609477	A	C	609477	3	2	67	1	0	0	0	0	1	0	0	0	11935	159	6	5	4068	5	PHRF1	11	609477	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	416341	609477	134397039	671	4033										
CDHR5	0	genome.wustl.edu	37	chr11	620137	620137	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaggttgcccgagtctgggTggatgatgaatgtaccattc	14	7	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	620137	620137	T	G	SNP	CDHR5	ENST00000358353	human	ensembl	69_37n	-1	known	missense	c.908	p.H303P	0.001	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834	127	1	0.78	111	25	18.12	-	-	-	G	620137	T	G	620137	3	3	67	1	0	0	0	0	1	0	0	0	3151	1696	59	5	1657	5	CDHR5	11	620137	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10660	620137	134386379	672	4034										
SLC25A22	0	genome.wustl.edu	37	chr11	792939	792939	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcacgatcacctggcaggTgccagccccacagcccgcca	11	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	792939	792939	T	G	SNP	SLC25A22	ENST00000320230	human	ensembl	69_37n	-1	known	missense	c.343	p.T115P	0.998	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542	36	0	0	28	12	30	-	-	-	G	792939	T	G	792939	3	3	67	1	0	0	0	0	1	0	0	0	14574	1696	59	5	648	5	SLC25A22	11	792939	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	172802	792939	134213577	673	4035										
MUC6	0	genome.wustl.edu	37	chr11	1016590	1016590	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagctgtgggtttggctggTcccactggtggtcactgtca	15	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	1016590	1016590	T	G	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.6211	p.T2071P	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	1064	9	0.83	740	131	15.02	-	-	-	G	1016590	T	G	1016590	3	3	67	1	0	0	0	0	1	0	0	0	10052	1667	58	5	1120	5	MUC6	11	1016590	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	223651	1016590	133989926	674	4036										
MUC2	0	genome.wustl.edu	37	chr11	1087446	1087446	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accagggtgttctccccaggTggaccccaagcccttctacg	10	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	1087446	1087446	T	G	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.3197	p.V1066G	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	125	0	0	57	18	24	-	-	-	G	1087446	T	G	1087446	3	3	67	1	0	0	0	0	1	0	0	0	10047	1710	59	5	3291	5	MUC2	11	1087446	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	70856	1087446	133919070	675	4037										
MUC2	0	genome.wustl.edu	37	chr11	1093528	1093528	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaccccaaccccaacacccAccagcacaaagagtacaacc	4	19	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	1093528	1093528	A	C	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.5347	p.T1783P	0.049	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	859	5	0.58	402	57	12.36	-	-	-	C	1093528	A	C	1093528	3	2	67	1	0	0	0	0	1	0	0	0	10047	159	6	5	5465	5	MUC2	11	1093528	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6082	1093528	133912988	676	4038										
MUC2	0	genome.wustl.edu	37	chr11	1093915	1093915	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactgtctccaccgcccagcAccaccacgtcccctccaggt	6	22	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	1093915	1093915	A	C	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.5734	p.T1912P	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	156	1	0.63	81	21	20.59	-	-	-	C	1093915	A	C	1093915	3	2	67	1	0	0	0	0	1	0	0	0	10047	159	6	5	5844	5	MUC2	11	1093915	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	387	1093915	133912601	677	4039										
INS-IGF2	0	genome.wustl.edu	37	chr11	2182116	2182116	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaggtgtgagccgcacaggTgttggttcacaaaggctgcg	15	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	2182116	2182116	T	G	SNP	INS-IGF2	ENST00000356578	human	ensembl	69_37n	-1	known	missense	c.86	p.H29P	1.000	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Insulin	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Insulin	-	no_errors	INS-IGF2	HGNC	ENSG00000129965	52	0	0	39	6	13.04	-	-	-	G	2182116	T	G	2182116	3	3	67	1	0	0	0	0	1	0	0	0	7817	1696	59	5	528	5	INS-IGF2	11	2182116	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1088201	2182116	132824400	678	4040										
TSPAN32	0	genome.wustl.edu	37	chr11	2339182	2339182	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccttggtgggctgcactctcAcctggaggctccggggaagc	15	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	2339182	2339182	A	C	SNP	TSPAN32	ENST00000486011	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN32	HGNC	ENSG00000064201	130	0	0	49	13	20.31	-	-	-	C	2339182	A	C	2339182	1	2	67	0	1	0	0	0	0	0	0	0	16743	174	6	5		5	TSPAN32	11	2339182	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	157066	2339182	132667334	679	4041										
SLC22A18	0	genome.wustl.edu	37	chr11	2929517	2929517	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccttcggctacctgcaaaccAccttcggggtgctgcagctg	11	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	2929517	2929517	A	C	SNP	SLC22A18	ENST00000312221	human	ensembl	69_37n	1	known	missense	c.199	p.T67P	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC22A18	HGNC	ENSG00000110628	127	0	0	98	32	24.24	-	-	-	C	2929517	A	C	2929517	3	2	67	1	0	0	0	0	1	0	0	0	14538	159	6	5	205	5	SLC22A18	11	2929517	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	590335	2929517	132076999	680	4042										
CARS	0	genome.wustl.edu	37	chr11	3063423	3063423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgaggctgttgtaaaggTggagtctgcatggctgggtc	18	5	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	3063423	3063423	T	G	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	missense	c.338	p.H113P	1.000	tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	111	0	0	160	21	11.48	-	-	-	G	3063423	T	G	3063423	3	3	67	1	0	0	0	0	1	0	0	0	2682	1696	59	5	2296	5	CARS	11	3063423	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	133906	3063423	131943093	681	4043										
OR52B4	0	genome.wustl.edu	37	chr11	4388713	4388713	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aacgggatgtggatacaaggTggaatgtggcgtccaaacct	14	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	4388713	4388713	T	G	SNP	OR52B4	ENST00000408920	human	ensembl	69_37n	-1	known	silent	c.813	p.P271	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996	180	1	0.55	130	23	14.94	-	-	-	G	4388713	T	G	4388713	2	3	67	1	0	0	0	0	0	0	0	1	11185	1683	59	5		5	OR52B4	11	4388713	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1325290	4388713	130617803	682	4044										
OR51S1	0	genome.wustl.edu	37	chr11	4870384	4870384	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgcccaccagcaagaaggTgggggccattgaagtgctgc	14	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	4870384	4870384	T	G	SNP	OR51S1	ENST00000322101	human	ensembl	69_37n	-1	known	missense	c.55	p.T19P	0.874	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922	184	1	0.53	117	17	12.69	-	-	-	G	4870384	T	G	4870384	3	3	67	1	0	0	0	0	1	0	0	0	11178	1696	59	5	919	5	OR51S1	11	4870384	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	481671	4870384	130136132	683	4045										
DNHD1	0	genome.wustl.edu	37	chr11	6580251	6580251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccctgcattgccactcgtcAcccccaagaccttcctagac	6	19	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	6580251	6580251	A	C	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.9331	p.T3111P	0.998	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	159	1	0.62	150	34	18.48	-	-	-	C	6580251	A	C	6580251	3	2	67	1	0	0	0	0	1	0	0	0	4703	159	6	5	9438	5	DNHD1	11	6580251	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1709867	6580251	128426265	684	4046										
CYB5R2	0	genome.wustl.edu	37	chr11	7690527	7690527	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaatactgagtcatcttcccAccttcaggatattgggggtg	10	9	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	7690527	7690527	A	C	SNP	CYB5R2	ENST00000299498	human	ensembl	69_37n	-1	known	silent	c.297	p.G99	0.749	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394	205	1	0.49	136	19	12.26	-	-	-	C	7690527	A	C	7690527	2	2	67	1	0	0	0	0	0	0	0	1	4158	146	6	5		5	CYB5R2	11	7690527	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1110276	7690527	127315989	685	4047										
TUB	0	genome.wustl.edu	37	chr11	8119262	8119262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcattccactccccaaggTgttcctcctggcgggaagga	10	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	8119262	8119262	T	G	SNP	TUB	ENST00000305253	human	ensembl	69_37n	1	known	missense	c.1052	p.V351G	1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	101	0	0	75	13	14.77	-	-	-	G	8119262	T	G	8119262	3	3	67	1	0	0	0	0	1	0	0	0	16839	1710	59	5	1128	5	TUB	11	8119262	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	428735	8119262	126887254	686	4048										
SCUBE2	0	genome.wustl.edu	37	chr11	9087458	9087458	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatgagcagccgccgtttcAcccgtttatccccatccacc	6	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	9087458	9087458	A	C	SNP	SCUBE2	ENST00000457346	human	ensembl	69_37n	-1	known	missense	c.830	p.V277G	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	163	1	0.6	126	20	13.7	-	-	-	C	9087458	A	C	9087458	3	2	67	1	0	0	0	0	1	0	0	0	14033	159	6	5	2324	5	SCUBE2	11	9087458	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	968196	9087458	125919058	687	4049										
LYVE1	0	genome.wustl.edu	37	chr11	10585615	10585615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaccacgaatccatctccaAcccagccatagctgtaaaag	6	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	10585615	10585615	A	C	SNP	LYVE1	ENST00000256178	human	ensembl	69_37n	-1	known	missense	c.269	p.V90G	0.983	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	-	no_errors	LYVE1	HGNC	ENSG00000133800	141	0	0	107	23	17.69	-	-	-	C	10585615	A	C	10585615	3	2	67	1	0	0	0	0	1	0	0	0	9196	43	2	5	715	5	LYVE1	11	10585615	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1498157	10585615	124420901	688	4050										
PARVA	0	genome.wustl.edu	37	chr11	12534909	12534909	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgaatgtggtgaaaaaggTgggaaaggggtgcctgggat	19	3	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	12534909	12534909	T	G	SNP	PARVA	ENST00000334956	human	ensembl	69_37n	1	known	splice_site	c.918+2	e9+2	1.000	-	-	-	no_errors	PARVA	HGNC	ENSG00000197702	174	0	0	231	30	11.49	-	-	-	G	12534909	T	G	12534909	5	3	67	1	0	0	0	0	0	0	1	0	11541	1710	59	5	834	5	PARVA	11	12534909	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1949294	12534909	122471607	689	4051										
C11orf58	0	genome.wustl.edu	37	chr11	16776453	16776453	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagaaggtgatgtggctggAgatgatgatgatgacgatga	18	2	0	8			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	16776453	16776453	A	G	SNP	C11orf58	ENST00000228136	human	ensembl	69_37n	1	known	silent	c.354	p.G118	1.000	NULL	NULL	-	no_errors	C11orf58	HGNC	ENSG00000110696	101	0	0	119	15	11.19	-	-	-	G	16776453	A	G	16776453	2	3	67	1	0	0	0	0	0	0	0	1	1662	291	11	5		5	C11orf58	11	16776453	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4241544	16776453	118230063	690	4052										
NAV2	0	genome.wustl.edu	37	chr11	19890545	19890545	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggggctgtctgcagaaggTgagtcagagcgcttgtcacg	16	9	3	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	19890545	19890545	T	G	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	splice_site	c.511+2	e4+2	1.000	-	-	-	no_errors	NAV2	HGNC	ENSG00000166833	130	0	0	93	16	14.68	-	-	-	G	19890545	T	G	19890545	5	3	67	1	0	0	0	0	0	0	1	0	10256	1710	59	5	606	5	NAV2	11	19890545	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3114092	19890545	115115971	691	4053										
NELL1	0	genome.wustl.edu	37	chr11	20950007	20950007	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagtgcacattgctggccagTgctgtaaggtctgccgacgt	13	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	20950007	20950007	T	G	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.979	p.C327G	1.000	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	164	0	0	175	25	12.5	-	-	-	G	20950007	T	G	20950007	3	3	67	1	0	0	0	0	1	0	0	0	10405	1696	59	5	1013	5	NELL1	11	20950007	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1059462	20950007	114056509	692	4054										
PDHX	0	genome.wustl.edu	37	chr11	34982031	34982031	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactggatgctagccagggcAcagccactggccctcggggg	15	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	34982031	34982031	A	C	SNP	PDHX	ENST00000227868	human	ensembl	69_37n	1	known	missense	c.607	p.T203P	1.000	pfam_E3-bd,superfamily_E3-bd	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	271	0	0	200	33	14.1	-	-	-	C	34982031	A	C	34982031	3	2	67	1	0	0	0	0	1	0	0	0	11740	159	6	5	744	5	PDHX	11	34982031	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14032024	34982031	100024485	693	4055										
PDHX	0	genome.wustl.edu	37	chr11	34988274	34988274	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccacagccactcccacagcAccttcgcccctacaggccac	5	23	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	34988274	34988274	A	C	SNP	PDHX	ENST00000227868	human	ensembl	69_37n	1	known	silent	c.729	p.A243	0.003	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	239	1	0.41	163	30	15.38	-	-	-	C	34988274	A	C	34988274	2	2	67	1	0	0	0	0	0	0	0	1	11740	146	6	5		5	PDHX	11	34988274	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6243	34988274	100018242	694	4056										
PDHX	0	genome.wustl.edu	37	chr11	34988328	34988328	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatccccggcctgtgatcccAccagtatcaactcctggaca	7	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	34988328	34988328	A	C	SNP	PDHX	ENST00000227868	human	ensembl	69_37n	1	known	silent	c.783	p.P261	0.994	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	248	1	0.4	172	22	11.28	-	-	-	C	34988328	A	C	34988328	2	2	67	1	0	0	0	0	0	0	0	1	11740	146	6	5		5	PDHX	11	34988328	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	54	34988328	100018188	695	4057										
ACCSL	0	genome.wustl.edu	37	chr11	44072135	44072135	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acatgaactgcattgaggacAccttgcttcagtaccctgat	8	11	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	44072135	44072135	A	C	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.598	p.T200P	0.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	191	1	0.52	134	26	16.15	-	-	-	C	44072135	A	C	44072135	3	2	67	1	0	0	0	0	1	0	0	0	134	159	6	5	608	5	ACCSL	11	44072135	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9083807	44072135	90934381	696	4058										
ACCS	0	genome.wustl.edu	37	chr11	44098953	44098953	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcttgacttcctaggtggaAcctgggcctgcctgtggtca	13	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	44098953	44098953	A	C	SNP	ACCS	ENST00000533208	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACCS	HGNC	ENSG00000110455	50	0	0	50	16	24.24	-	-	-	C	44098953	A	C	44098953	1	2	67	0	1	0	0	0	0	0	0	0	133	58	2	5		5	ACCS	11	44098953	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	26818	44098953	90907563	697	4059										
TP53I11	0	genome.wustl.edu	37	chr11	44958227	44958227	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcttcatcagaggccggggTgtgggcgcagcatctggccg	17	11	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	44958227	44958227	T	G	SNP	TP53I11	ENST00000531130	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TP53I11	HGNC	ENSG00000175274	11	0	0	4	4	50	-	-	-	G	44958227	T	G	44958227	1	3	67	0	1	0	0	0	0	0	0	0	16481	1711	59	5		5	TP53I11	11	44958227	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	859274	44958227	90048289	698	4060										
PHF21A	0	genome.wustl.edu	37	chr11	45967433	45967433	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggacacaggctgaacaggTgcagggaaagtgaatgtggt	17	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	45967433	45967433	T	G	SNP	PHF21A	ENST00000257821	human	ensembl	69_37n	-1	known	silent	c.1410	p.A470	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365	288	0	0	233	35	13.06	-	-	-	G	45967433	T	G	45967433	2	3	67	1	0	0	0	0	0	0	0	1	11907	1683	59	5		5	PHF21A	11	45967433	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1009206	45967433	89039083	699	4061										
CHRM4	0	genome.wustl.edu	37	chr11	46407130	46407130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggcccgcggctgcaggggAggggcgggcatggcgggcgt	24	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	46407130	46407130	A	G	SNP	CHRM4	ENST00000433765	human	ensembl	69_37n	-1	known	silent	c.978	p.P326	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Musac_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	119	0	0	92	17	15.6	-	-	-	G	46407130	A	G	46407130	2	3	67	1	0	0	0	0	0	0	0	1	3408	291	11	5		5	CHRM4	11	46407130	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	439697	46407130	88599386	700	4062										
AMBRA1	0	genome.wustl.edu	37	chr11	46567268	46567268	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggagctgagccgtagggTggaaagccagggaggcaatg	19	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	46567268	46567268	T	G	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.437	p.H146P	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	116	1	0.85	59	10	14.49	-	-	-	G	46567268	T	G	46567268	3	3	67	1	0	0	0	0	1	0	0	0	565	1696	59	5	3249	5	AMBRA1	11	46567268	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	160138	46567268	88439248	701	4063										
ZNF408	0	genome.wustl.edu	37	chr11	46723028	46723028	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggcctcaaagacgtcccAcccgagccgacccgagacat	10	17	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	46723028	46723028	A	C	SNP	ZNF408	ENST00000311764	human	ensembl	69_37n	1	known	silent	c.132	p.P44	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213	97	0	0	38	19	32.76	-	-	-	C	46723028	A	C	46723028	2	2	67	1	0	0	0	0	0	0	0	1	17984	146	6	5		5	ZNF408	11	46723028	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	155760	46723028	88283488	702	4064										
LRP4	0	genome.wustl.edu	37	chr11	46916322	46916322	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actcagagcggtgtggcagcAcctgccggatgtcgatgcga	15	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	46916322	46916322	A	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.1358	p.V453G	1.000	superfamily_Growth_fac_rcpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	160	1	0.61	74	17	18.28	-	-	-	C	46916322	A	C	46916322	3	2	67	1	0	0	0	0	1	0	0	0	9025	159	6	5	4467	5	LRP4	11	46916322	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	193294	46916322	88090194	703	4065										
MADD	0	genome.wustl.edu	37	chr11	47317507	47317507	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacttgagcagcaatgcaggTgatggaccaggtggcgaggg	18	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	47317507	47317507	T	G	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	silent	c.3660	p.G1220	0.988	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	240	1	0.41	157	23	12.78	-	-	-	G	47317507	T	G	47317507	2	3	67	1	0	0	0	0	0	0	0	1	9219	1683	59	5		5	MADD	11	47317507	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	401185	47317507	87689009	704	4066										
FNBP4	0	genome.wustl.edu	37	chr11	47754065	47754065	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagatgtcaaaggtgaaaggTgaaaaggggagaagagtgcg	18	2	1	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	47754065	47754065	T	G	SNP	FNBP4	ENST00000527894	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FNBP4	HGNC	ENSG00000109920	201	0	0	276	60	17.8	-	-	-	G	47754065	T	G	47754065	1	3	67	0	1	0	0	0	0	0	0	0	6013	1711	59	5		5	FNBP4	11	47754065	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	436558	47754065	87252451	705	4067										
FNBP4	0	genome.wustl.edu	37	chr11	47774516	47774516	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgccaaccagatgtttgggTggagtctgttccatttgaag	12	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	47774516	47774516	T	G	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.589	p.T197P	0.197	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	198	1	0.5	228	29	11.28	-	-	-	G	47774516	T	G	47774516	3	3	67	1	0	0	0	0	1	0	0	0	6013	1696	59	5	2520	5	FNBP4	11	47774516	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20451	47774516	87232000	706	4068										
OR5R1	0	genome.wustl.edu	37	chr11	56185393	56185393	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acactcagtgatcatgaaggTgagaaaacaacccagttggg	11	8	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	56185393	56185393	T	G	SNP	OR5R1	ENST00000312253	human	ensembl	69_37n	-1	known	missense	c.316	p.T106P	0.005	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	125	0	0	63	19	23.17	-	-	-	G	56185393	T	G	56185393	3	3	67	1	0	0	0	0	1	0	0	0	11253	1696	59	5	660	5	OR5R1	11	56185393	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8410877	56185393	78821123	707	4069										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57075952	57075952	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagacgaggagtaatcttcAccctgggtctctggcccact	11	12	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	57075952	57075952	A	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.4233	p.G1411	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	119	0	0	96	22	18.33	-	-	-	C	57075952	A	C	57075952	2	2	67	1	0	0	0	0	0	0	0	1	16415	146	6	5		5	TNKS1BP1	11	57075952	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	890559	57075952	77930564	708	4070										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57076399	57076399	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggaactctccggcctccacAcctgaccagtcagtctgccc	8	18	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	57076399	57076399	A	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.3786	p.G1262	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	56	0	0	70	9	11.39	-	-	-	C	57076399	A	C	57076399	2	2	67	1	0	0	0	0	0	0	0	1	16415	146	6	5		5	TNKS1BP1	11	57076399	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	447	57076399	77930117	709	4071										
OR10Q1	0	genome.wustl.edu	37	chr11	57995521	57995521	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaccaacgcgatttggctgTcctcatcctctgaggtgctg	11	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	57995521	57995521	T	G	SNP	OR10Q1	ENST00000316770	human	ensembl	69_37n	-1	known	missense	c.827	p.D276A	0.658	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475	142	1	0.7	53	22	29.33	-	-	-	G	57995521	T	G	57995521	3	3	67	1	0	0	0	0	1	0	0	0	10989	1667	58	5	136	5	OR10Q1	11	57995521	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	919122	57995521	77010995	710	4072										
OR5B21	0	genome.wustl.edu	37	chr11	58274798	58274798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgtccacggactggctggAgttgggctgtaagtacatga	15	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	58274798	58274798	A	G	SNP	OR5B21	ENST00000360374	human	ensembl	69_37n	-1	known	missense	c.781	p.S261P	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B21	HGNC	ENSG00000198283	193	0	0	157	30	16.04	-	-	-	G	58274798	A	G	58274798	3	3	67	1	0	0	0	0	1	0	0	0	11224	304	11	5	150	5	OR5B21	11	58274798	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	279277	58274798	76731718	711	4073										
PGA3	0	genome.wustl.edu	37	chr11	60971703	60971703	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcccccagtggaaggctcccAccctggtagatgaacagccc	10	16	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	60971703	60971703	A	C	SNP	PGA3	ENST00000325558	human	ensembl	69_37n	1	known	missense	c.181	p.T61P	0.000	superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA3	HGNC	ENSG00000229859	442	2	0.45	280	49	14.89	-	-	-	C	60971703	A	C	60971703	3	2	67	1	0	0	0	0	1	0	0	0	11845	159	6	5	187	5	PGA3	11	60971703	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2696905	60971703	74034813	712	4074										
PGA5	0	genome.wustl.edu	37	chr11	61018649	61018649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccagggcatgaacgtccccAccgaatctggagagctttgg	12	12	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	61018649	61018649	A	C	SNP	PGA5	ENST00000312403	human	ensembl	69_37n	1	known	missense	c.1063	p.T355P	0.002	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA5	HGNC	ENSG00000256713	346	2	0.57	253	35	12.11	-	-	-	C	61018649	A	C	61018649	3	2	67	1	0	0	0	0	1	0	0	0	11846	159	6	5	1097	5	PGA5	11	61018649	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	46946	61018649	73987867	713	4075										
AHNAK	0	genome.wustl.edu	37	chr11	62290775	62290775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttggggcccttgatgtccAcctcagggccttttagatca	10	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62290775	62290775	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.11114	p.V3705G	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	150	1	0.66	178	24	11.82	-	-	-	C	62290775	A	C	62290775	3	2	67	1	0	0	0	0	1	0	0	0	414	159	6	5	6678	5	AHNAK	11	62290775	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1272126	62290775	72715741	714	4076										
MTA2	0	genome.wustl.edu	37	chr11	62361441	62361441	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcaatcagcgttggcttcAccttcaggggcaagttgggt	13	10	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62361441	62361441	A	C	SNP	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	missense	c.1913	p.V638G	1.000	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	127	0	0	82	16	16	-	-	-	C	62361441	A	C	62361441	3	2	67	1	0	0	0	0	1	0	0	0	9981	159	6	5	97	5	MTA2	11	62361441	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	70666	62361441	72645075	715	4077										
NXF1	0	genome.wustl.edu	37	chr11	62572818	62572818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taccgctgtacgacttccccTcgtccgccatgccacagcga	8	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62572818	62572818	T	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.11	p.E4G	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	40	0	0	24	5	17.24	-	-	-	C	62572818	T	C	62572818	3	2	67	1	0	0	0	0	1	0	0	0	10855	1551	54	5	1987	5	NXF1	11	62572818	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	211377	62572818	72433698	716	4078										
WDR74	0	genome.wustl.edu	37	chr11	62603236	62603236	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcaaagcattctctttcccAcctgtggcaaccacatgggg	8	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62603236	62603236	A	C	SNP	WDR74	ENST00000278856	human	ensembl	69_37n	-1	known	silent	c.447	p.G149	0.928	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316	144	0	0	84	24	22.22	-	-	-	C	62603236	A	C	62603236	2	2	67	1	0	0	0	0	0	0	0	1	17421	146	6	5		5	WDR74	11	62603236	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	30418	62603236	72403280	717	4079										
CHRM1	0	genome.wustl.edu	37	chr11	62677354	62677354	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatggtgctgttgacgtagcAcagccagtagcccagctccc	12	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62677354	62677354	A	C	SNP	CHRM1	ENST00000306960	human	ensembl	69_37n	-1	known	missense	c.1219	p.C407G	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Musac_M1_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CHRM1	HGNC	ENSG00000168539	110	0	0	51	13	20.31	-	-	-	C	62677354	A	C	62677354	3	2	67	1	0	0	0	0	1	0	0	0	3405	159	6	5	167	5	CHRM1	11	62677354	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	74118	62677354	72329162	718	4080										
SLC22A8	0	genome.wustl.edu	37	chr11	62761320	62761320	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ataggcatcccttcccaaacAcagccaatactgtcctcacg	5	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62761320	62761320	A	C	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	missense	c.1247	p.V416G	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	173	0	0	102	16	13.45	-	-	-	C	62761320	A	C	62761320	3	2	67	1	0	0	0	0	1	0	0	0	14549	159	6	5	393	5	SLC22A8	11	62761320	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	83966	62761320	72245196	719	4081										
SLC22A8	0	genome.wustl.edu	37	chr11	62767238	62767238	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccatgtagatggggaaggTggggctgaaggctgcaccgg	19	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	62767238	62767238	T	G	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	missense	c.514	p.T172P	0.922	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	115	1	0.85	38	11	21.57	-	-	-	G	62767238	T	G	62767238	3	3	67	1	0	0	0	0	1	0	0	0	14549	1696	59	5	1146	5	SLC22A8	11	62767238	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5918	62767238	72239278	720	4082										
TRMT112	0	genome.wustl.edu	37	chr11	64084603	64084603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcaaccggccctttcggcAcctggatcagacgcaactgt	9	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64084603	64084603	A	C	SNP	TRMT112	ENST00000544844	human	ensembl	69_37n	-1	known	missense	c.197	p.V66G	1.000	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	TRMT112	HGNC	ENSG00000173113	117	0	0	101	20	16.39	-	-	-	C	64084603	A	C	64084603	3	2	67	1	0	0	0	0	1	0	0	0	16659	159	6	5	188	5	TRMT112	11	64084603	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1317365	64084603	70921913	721	4083										
PRDX5	0	genome.wustl.edu	37	chr11	64088235	64088235	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgcctttgtgactggcgagTggggccgagcccacaaggcg	16	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64088235	64088235	T	G	SNP	PRDX5	ENST00000265462	human	ensembl	69_37n	1	known	missense	c.409	p.W137G	1.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432	239	2	0.83	186	25	11.85	-	-	-	G	64088235	T	G	64088235	3	3	67	1	0	0	0	0	1	0	0	0	12549	1696	59	5	419	5	PRDX5	11	64088235	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3632	64088235	70918281	722	4084										
SLC22A11	0	genome.wustl.edu	37	chr11	64332745	64332745	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctctgcaaaggagccgcggTcggtgctggacctgttctgc	14	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64332745	64332745	T	G	SNP	SLC22A11	ENST00000301891	human	ensembl	69_37n	1	known	missense	c.994	p.S332A	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	137	1	0.72	73	15	17.05	-	-	-	G	64332745	T	G	64332745	3	3	67	1	0	0	0	0	1	0	0	0	14531	1667	58	5	1016	5	SLC22A11	11	64332745	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	244510	64332745	70673771	723	4085										
MAP4K2	0	genome.wustl.edu	37	chr11	64567687	64567687	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgctgagtcgtgaacgggTgctggaaagtgggggagggg	22	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64567687	64567687	T	G	SNP	MAP4K2	ENST00000294066	human	ensembl	69_37n	-1	known	missense	c.809	p.H270P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067	67	0	0	45	11	19.64	-	-	-	G	64567687	T	G	64567687	3	3	67	1	0	0	0	0	1	0	0	0	9331	1710	59	5	1737	5	MAP4K2	11	64567687	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	234942	64567687	70438829	724	4086										
SYVN1	0	genome.wustl.edu	37	chr11	64897220	64897220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccaaggaggccagcacggTgaggtactggttgatctgca	14	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64897220	64897220	T	G	SNP	SYVN1	ENST00000377190	human	ensembl	69_37n	-1	known	missense	c.1576	p.T526P	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298	118	0	0	81	19	19	-	-	-	G	64897220	T	G	64897220	3	3	67	1	0	0	0	0	1	0	0	0	15579	1696	59	5	289	5	SYVN1	11	64897220	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	329533	64897220	70109296	725	4087										
SPDYC	0	genome.wustl.edu	37	chr11	64938906	64938906	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggggctgcagccggcaaggTgggggcaatgggttcctccg	20	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	64938906	64938906	T	G	SNP	SPDYC	ENST00000377185	human	ensembl	69_37n	1	known	silent	c.135	p.G45	0.000	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710	64	0	0	92	14	13.21	-	-	-	G	64938906	T	G	64938906	2	3	67	1	0	0	0	0	0	0	0	1	15119	1683	59	5		5	SPDYC	11	64938906	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	41686	64938906	70067610	726	4088										
POLA2	0	genome.wustl.edu	37	chr11	65061635	65061635	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatactagctccggctcccAccttgtctttgtcccgtcat	6	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65061635	65061635	A	C	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	missense	c.1256	p.H419P	1.000	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	134	0	0	204	41	16.6	-	-	-	C	65061635	A	C	65061635	3	2	67	1	0	0	0	0	1	0	0	0	12262	159	6	5	1310	5	POLA2	11	65061635	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	122729	65061635	69944881	727	4089										
EHBP1L1	0	genome.wustl.edu	37	chr11	65349313	65349313	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggacaggccagaggccagTggggtggacactgagccaag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65349313	65349313	T	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.1170	p.S390R	0.004	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	295	0	0	154	19	10.98	-	-	-	G	65349313	T	G	65349313	3	3	67	1	0	0	0	0	1	0	0	0	5011	1693	59	5	1204	5	EHBP1L1	11	65349313	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	287678	65349313	69657203	728	4090	34	2								
EHBP1L1	0	genome.wustl.edu	37	chr11	65349318	65349318	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggccagaggccagtggggTggacactgagccaaggtcag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65349318	65349318	T	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.1175	p.V392G	0.007	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	297	2	0.66	131	40	23.39	-	-	-	G	65349318	T	G	65349318	3	3	67	1	0	0	0	0	1	0	0	0	5011	1696	59	5	1209	5	EHBP1L1	11	65349318	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5	65349318	69657198	729	4091	34	2								
EHBP1L1	0	genome.wustl.edu	37	chr11	65349335	65349335	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtggacactgagccaaggTcaggaggcagagaggcaaac	17	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65349335	65349335	T	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.1192	p.S398A	0.001	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	296	2	0.66	160	28	14.74	-	-	-	G	65349335	T	G	65349335	3	3	67	1	0	0	0	0	1	0	0	0	5011	1667	58	5	1226	5	EHBP1L1	11	65349335	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	17	65349335	69657181	730	4092										
SIPA1	0	genome.wustl.edu	37	chr11	65417952	65417952	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggaggacctgcagaaggTgaggggtgggctgagcttgg	21	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65417952	65417952	T	G	SNP	SIPA1	ENST00000394224	human	ensembl	69_37n	1	known	splice_site	c.2982+2	e14+2	1.000	-	-	-	no_errors	SIPA1	HGNC	ENSG00000213445	67	0	0	59	14	18.67	-	-	-	G	65417952	T	G	65417952	5	3	67	1	0	0	0	0	0	0	1	0	14417	1710	59	5	3038	5	SIPA1	11	65417952	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	68617	65417952	69588564	731	4093										
CFL1	0	genome.wustl.edu	37	chr11	65623676	65623676	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaccttcatgtcgttgaacAccttgatgacaccatcagag	8	12	2	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65623676	65623676	A	C	SNP	CFL1	ENST00000308162	human	ensembl	69_37n	-1	known	missense	c.41	p.V14G	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	CFL1	HGNC	ENSG00000172757	109	1	0.89	61	19	23.75	-	-	-	C	65623676	A	C	65623676	3	2	67	1	0	0	0	0	1	0	0	0	3319	159	6	5	471	5	CFL1	11	65623676	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	205724	65623676	69382840	732	4094										
EFEMP2	0	genome.wustl.edu	37	chr11	65634507	65634507	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtactcccgggggcccgtcAccggccgggcgaggaccagc	16	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65634507	65634507	A	C	SNP	EFEMP2	ENST00000307998	human	ensembl	69_37n	-1	known	missense	c.1214	p.V405G	1.000	NULL	pfam_EGF-like_Ca-bd,superfamily_TIL_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638	90	0	0	58	13	18.31	-	-	-	C	65634507	A	C	65634507	3	2	67	1	0	0	0	0	1	0	0	0	4977	159	6	5	121	5	EFEMP2	11	65634507	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10831	65634507	69372009	733	4095										
DRAP1	0	genome.wustl.edu	37	chr11	65688408	65688408	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggagacatcacaacccccAccccaggccagccacccctc	7	21	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65688408	65688408	A	C	SNP	DRAP1	ENST00000312515	human	ensembl	69_37n	1	known	silent	c.477	p.P159	0.968	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	DRAP1	HGNC	ENSG00000175550	126	1	0.78	106	24	18.18	-	-	-	C	65688408	A	C	65688408	2	2	67	1	0	0	0	0	0	0	0	1	4790	146	6	5		5	DRAP1	11	65688408	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	53901	65688408	69318108	734	4096										
CATSPER1	0	genome.wustl.edu	37	chr11	65793147	65793147	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggagactttccatgctggTgggcttcatgatgacgggac	15	8	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	65793147	65793147	T	G	SNP	CATSPER1	ENST00000312106	human	ensembl	69_37n	-1	known	missense	c.704	p.H235P	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	249	1	0.4	218	27	11.02	-	-	-	G	65793147	T	G	65793147	3	3	67	1	0	0	0	0	1	0	0	0	2712	1696	59	5	1686	5	CATSPER1	11	65793147	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	104739	65793147	69213369	735	4097										
YIF1A	0	genome.wustl.edu	37	chr11	66055553	66055553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccgggggcaggccacaccTccttgtgcaccatgtccttc	10	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	66055553	66055553	T	C	SNP	YIF1A	ENST00000376901	human	ensembl	69_37n	-1	known	missense	c.242	p.E81G	1.000	pfam_Hrf1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851	85	0	0	34	6	15	-	-	-	C	66055553	T	C	66055553	3	2	67	1	0	0	0	0	1	0	0	0	17572	1565	54	5	667	5	YIF1A	11	66055553	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	262406	66055553	68950963	736	4098										
CD248	0	genome.wustl.edu	37	chr11	66082606	66082606	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatgtgtagggctgatgggTgaggtctggttagtggggct	21	3	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	66082606	66082606	T	G	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	silent	c.1893	p.S631	0.000	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	112	0	0	81	20	19.61	-	-	-	G	66082606	T	G	66082606	2	3	67	1	0	0	0	0	0	0	0	1	3018	1683	59	5		5	CD248	11	66082606	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	27053	66082606	68923910	737	4099										
CD248	0	genome.wustl.edu	37	chr11	66082665	66082665	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggagggctgcgggctgggTggcagcaggcacagagattt	21	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	66082665	66082665	T	G	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	missense	c.1834	p.T612P	1.000	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	184	0	0	153	37	19.27	-	-	-	G	66082665	T	G	66082665	3	3	67	1	0	0	0	0	1	0	0	0	3018	1696	59	5	443	5	CD248	11	66082665	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	59	66082665	68923851	738	4100										
CCS	0	genome.wustl.edu	37	chr11	66366987	66366987	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcaccgtgcagggggtggTgcgcttcctacagctgaccc	15	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	66366987	66366987	T	G	SNP	CCS	ENST00000533244	human	ensembl	69_37n	1	known	missense	c.308	p.V103G	0.998	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom	pfam_SOD_Cu_Zn_dom,pfam_HeavyMe-assoc_HMA,superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_SOD_Cu_Zn_dom	-	no_errors	CCS	HGNC	ENSG00000173992	41	0	0	14	9	39.13	-	-	-	G	66366987	T	G	66366987	3	3	67	1	0	0	0	0	1	0	0	0	2981	1696	59	5	322	5	CCS	11	66366987	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	284322	66366987	68639529	739	4101										
PC	0	genome.wustl.edu	37	chr11	66638600	66638600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgatggggaagccgtaggTgttggagaactcgtgggcct	18	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	66638600	66638600	T	G	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.556	p.T186P	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	238	2	0.83	149	24	13.71	-	-	-	G	66638600	T	G	66638600	3	3	67	1	0	0	0	0	1	0	0	0	11570	1696	59	5	3048	5	PC	11	66638600	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	271613	66638600	68367916	740	4102										
RPS6KB2	0	genome.wustl.edu	37	chr11	67200889	67200889	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcactgcccccctacctcAccccagatgcccgggacctt	8	20	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	67200889	67200889	A	C	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	missense	c.877	p.T293P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	82	0	0	71	17	19.1	-	-	-	C	67200889	A	C	67200889	3	2	67	1	0	0	0	0	1	0	0	0	13743	159	6	5	915	5	RPS6KB2	11	67200889	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	562289	67200889	67805627	741	4103										
GPR152	0	genome.wustl.edu	37	chr11	67219117	67219117	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggctggagtgtggggttcAcctgaggctgggccacagga	19	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	67219117	67219117	A	C	SNP	GPR152	ENST00000312457	human	ensembl	69_37n	-1	known	missense	c.1079	p.V360G	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR152	HGNC	ENSG00000175514	133	1	0.74	50	10	16.67	-	-	-	C	67219117	A	C	67219117	3	2	67	1	0	0	0	0	1	0	0	0	6708	159	6	5	337	5	GPR152	11	67219117	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	18228	67219117	67787399	742	4104										
PITPNM1	0	genome.wustl.edu	37	chr11	67261773	67261773	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acatgaagcgcccgcttagcAcctgggggcggccctcgcac	13	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	67261773	67261773	A	C	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.2801	p.V934G	1.000	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	21	0	0	13	7	33.33	-	-	-	C	67261773	A	C	67261773	3	2	67	1	0	0	0	0	1	0	0	0	12024	159	6	5	957	5	PITPNM1	11	67261773	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42656	67261773	67744743	743	4105										
ALDH3B1	0	genome.wustl.edu	37	chr11	67789196	67789196	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgccctgcagagcaccatcAcccgtttctatggcgacgac	9	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	67789196	67789196	A	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	105	0	0	52	10	15.87	-	-	-	C	67789196	A	C	67789196	1	2	67	0	1	0	0	0	0	0	0	0	499	159	6	5		5	ALDH3B1	11	67789196	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	527423	67789196	67217320	744	4106										
TCIRG1	0	genome.wustl.edu	37	chr11	67818263	67818263	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctacaagctgagtcccttcAccttcgctgccacagatgac	8	15	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	67818263	67818263	A	C	SNP	TCIRG1	ENST00000265686	human	ensembl	69_37n	1	known	missense	c.2470	p.T824P	0.987	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	TCIRG1	HGNC	ENSG00000110719	87	0	0	52	11	17.46	-	-	-	C	67818263	A	C	67818263	3	2	67	1	0	0	0	0	1	0	0	0	15798	159	6	5	2544	5	TCIRG1	11	67818263	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	29067	67818263	67188253	745	4107										
FGF3	0	genome.wustl.edu	37	chr11	69631164	69631164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctgatggccacaatgcccAcctccactgccgttatctcc	6	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	69631164	69631164	A	C	SNP	FGF3	ENST00000334134	human	ensembl	69_37n	-1	known	missense	c.248	p.V83G	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF3	HGNC	ENSG00000186895	151	1	0.65	66	24	26.37	-	-	-	C	69631164	A	C	69631164	3	2	67	1	0	0	0	0	1	0	0	0	5899	159	6	5	479	5	FGF3	11	69631164	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1812901	69631164	65375352	746	4108										
SHANK2	0	genome.wustl.edu	37	chr11	70331454	70331454	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcggacttggctcccattggTgaatccagtccttcccccgg	11	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	70331454	70331454	T	G	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	silent	c.4947	p.S1649	0.002	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	70	0	0	47	12	20.34	-	-	-	G	70331454	T	G	70331454	2	3	67	1	0	0	0	0	0	0	0	1	14354	1683	59	5		5	SHANK2	11	70331454	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	700290	70331454	64675062	747	4109										
SHANK2	0	genome.wustl.edu	37	chr11	70348996	70348996	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgccggatcatgttcaccAcctgcctgtggccgactttg	10	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	70348996	70348996	A	C	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.2105	p.V702G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	75	0	0	75	26	25.74	-	-	-	C	70348996	A	C	70348996	3	2	67	1	0	0	0	0	1	0	0	0	14354	159	6	5	3483	5	SHANK2	11	70348996	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	17542	70348996	64657520	748	4110										
NADSYN1	0	genome.wustl.edu	37	chr11	71191835	71191835	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccctaccccagagtgaaggTggactttgccctctcgtgcc	10	16	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	71191835	71191835	T	G	SNP	NADSYN1	ENST00000319023	human	ensembl	69_37n	1	known	missense	c.908	p.V303G	1.000	pirsf_Gln-dep_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890	67	0	0	35	8	18.18	-	-	-	G	71191835	T	G	71191835	3	3	67	1	0	0	0	0	1	0	0	0	10210	1696	59	5	950	5	NADSYN1	11	71191835	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	842839	71191835	63814681	749	4111										
KRTAP5-9	0	genome.wustl.edu	37	chr11	71259913	71259913	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctgtgggggctccaagggAggctgtggttcttgtggctg	18	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	71259913	71259913	A	G	SNP	KRTAP5-9	ENST00000528743	human	ensembl	69_37n	1	known	silent	c.210	p.G70	0.453	NULL	NULL	-	no_errors	KRTAP5-9	HGNC	ENSG00000254997	261	2	0.75	258	41	13.62	-	-	-	G	71259913	A	G	71259913	2	3	67	1	0	0	0	0	0	0	0	1	8622	291	11	5		5	KRTAP5-9	11	71259913	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	68078	71259913	63746603	750	4112										
STARD10	0	genome.wustl.edu	37	chr11	72492156	72492156	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaagtcttggtcatcgggcAcctggacactctcacggccc	11	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	72492156	72492156	A	C	SNP	STARD10	ENST00000538536	human	ensembl	69_37n	-1	novel	splice_site	c.69+2	e1+2	1.000	-	-	-	no_errors	STARD10	HGNC	ENSG00000214530	71	0	0	55	13	19.12	-	-	-	C	72492156	A	C	72492156	5	2	67	1	0	0	0	0	0	0	1	0	15346	159	6	5	828	5	STARD10	11	72492156	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1232243	72492156	62514360	751	4113										
ARHGEF17	0	genome.wustl.edu	37	chr11	73021837	73021837	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcccaccttcaggttctggTgggagcgaattgagcaatgg	14	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	73021837	73021837	T	G	SNP	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	silent	c.2154	p.G718	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	38	0	0	17	5	22.73	-	-	-	G	73021837	T	G	73021837	2	3	67	1	0	0	0	0	0	0	0	1	902	1683	59	5		5	ARHGEF17	11	73021837	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	529681	73021837	61984679	752	4114										
RELT	0	genome.wustl.edu	37	chr11	73101617	73101617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctgccctggcctctcgccAccctgacatcaacaaccctt	6	19	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	73101617	73101617	A	C	SNP	RELT	ENST00000064780	human	ensembl	69_37n	1	known	missense	c.67	p.T23P	0.985	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967	102	0	0	64	11	14.67	-	-	-	C	73101617	A	C	73101617	3	2	67	1	0	0	0	0	1	0	0	0	13304	159	6	5	73	5	RELT	11	73101617	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	79780	73101617	61904899	753	4115										
RELT	0	genome.wustl.edu	37	chr11	73102243	73102243	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtcaaccatgttcctgggcAcctctgggtactcatggctg	11	12	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	73102243	73102243	A	C	SNP	RELT	ENST00000064780	human	ensembl	69_37n	1	known	silent	c.342	p.A114	0.927	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967	155	0	0	162	21	11.48	-	-	-	C	73102243	A	C	73102243	2	2	67	1	0	0	0	0	0	0	0	1	13304	146	6	5		5	RELT	11	73102243	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	626	73102243	61904273	754	4116										
SERPINH1	0	genome.wustl.edu	37	chr11	75280189	75280189	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccatctccttgcccaagggTgtggtggaggtgacccatga	14	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	75280189	75280189	T	G	SNP	SERPINH1	ENST00000358171	human	ensembl	69_37n	1	known	silent	c.927	p.G309	0.013	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257	125	0	0	67	12	15.19	-	-	-	G	75280189	T	G	75280189	2	3	67	1	0	0	0	0	0	0	0	1	14205	1683	59	5		5	SERPINH1	11	75280189	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2177946	75280189	59726327	755	4117										
WNT11	0	genome.wustl.edu	37	chr11	75898156	75898156	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgctcacacctgcggcaggTgacgtagcagcaccagtggt	13	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	75898156	75898156	T	G	SNP	WNT11	ENST00000322563	human	ensembl	69_37n	-1	known	missense	c.1018	p.T340P	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT11	HGNC	ENSG00000085741	106	0	0	40	22	35.48	-	-	-	G	75898156	T	G	75898156	3	3	67	1	0	0	0	0	1	0	0	0	17481	1696	59	5	50	5	WNT11	11	75898156	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	617967	75898156	59108360	756	4118										
GAB2	0	genome.wustl.edu	37	chr11	77937543	77937543	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgttgtccattgcagggAgggtgttgcgtctggggatg	19	6	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	77937543	77937543	A	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	missense	c.1175	p.L392P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	172	0	0	257	34	11.6	-	-	-	G	77937543	A	G	77937543	3	3	67	1	0	0	0	0	1	0	0	0	6198	304	11	5	883	5	GAB2	11	77937543	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2039387	77937543	57068973	757	4119										
ODZ4	0	genome.wustl.edu	37	chr11	78380178	78380178	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgagtggatcatagaggccAccatggtagcctatgatgat	13	7	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	78380178	78380178	A	C	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.7212	p.G2404	0.024	tigrfam_Rhs_assc_core	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	157	0	0	113	16	12.4	-	-	-	C	78380178	A	C	78380178	2	2	67	1	0	0	0	0	0	0	0	1	10910	146	6	5		5	ODZ4	11	78380178	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	442635	78380178	56626338	758	4120										
ODZ4	0	genome.wustl.edu	37	chr11	78399221	78399221	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatcacttcggaaactgctcAcctggccagtagggaaggtc	11	11	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	78399221	78399221	A	C	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.5138	p.V1713G	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	169	0	0	116	28	19.44	-	-	-	C	78399221	A	C	78399221	3	2	67	1	0	0	0	0	1	0	0	0	10910	159	6	5	3195	5	ODZ4	11	78399221	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	19043	78399221	56607295	759	4121										
GPR83	0	genome.wustl.edu	37	chr11	94134098	94134098	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgacgatgaagaggctggTggccgagtgcattcgctggt	17	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	94134098	94134098	T	G	SNP	GPR83	ENST00000243673	human	ensembl	69_37n	-1	known	missense	c.316	p.T106P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	141	1	0.7	73	20	21.51	-	-	-	G	94134098	T	G	94134098	3	3	67	1	0	0	0	0	1	0	0	0	6763	1696	59	5	971	5	GPR83	11	94134098	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	15734877	94134098	40872418	760	4122										
AMOTL1	0	genome.wustl.edu	37	chr11	94532825	94532825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaatggtctaccagtcagcaCgccaagaaccgcagggtcaa	10	12	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	94532825	94532825	C	T	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.469	p.R157C	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	126	0	0	42	28	40	-	-	-	T	94532825	C	T	94532825	3	4	67	1	0	0	0	0	1	0	0	0	583	536	19	1	479	1	AMOTL1	11	94532825	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	398727	94532825	40473691	761	4123										
DLAT	0	genome.wustl.edu	37	chr11	111904192	111904192	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcagagatgggaaaaaaaagTgggtgagaagctaagtgaag	15	2	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	111904192	111904192	T	G	SNP	DLAT	ENST00000280346	human	ensembl	69_37n	1	known	missense	c.725	p.V242G	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_AcTrfase_Pyrv_DH_cplx_L	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_AcTrfase_Pyrv_DH_cplx_L	-	no_errors	DLAT	HGNC	ENSG00000150768	169	0	0	151	19	11.11	-	-	-	G	111904192	T	G	111904192	3	3	67	1	0	0	0	0	1	0	0	0	4585	1696	59	5	743	5	DLAT	11	111904192	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	17371367	111904192	23102324	762	4124										
PAFAH1B2	0	genome.wustl.edu	37	chr11	117034545	117034545	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcagaagaagtagcaggTgggatcgaggccattgtaca	14	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	117034545	117034545	T	G	SNP	PAFAH1B2	ENST00000527958	human	ensembl	69_37n	1	known	silent	c.348	p.G116	0.999	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PAFAH1B2	HGNC	ENSG00000168092	202	1	0.49	165	30	15.31	-	-	-	G	117034545	T	G	117034545	2	3	67	1	0	0	0	0	0	0	0	1	11458	1683	59	5		5	PAFAH1B2	11	117034545	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5130353	117034545	17971971	763	4125										
PCSK7	0	genome.wustl.edu	37	chr11	117098987	117098987	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctccgtcatccactaccaccAccgtcacccctcgcccagtc	4	23	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	117098987	117098987	A	C	SNP	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	missense	c.548	p.V183G	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	192	0	0	96	19	16.52	-	-	-	C	117098987	A	C	117098987	3	2	67	1	0	0	0	0	1	0	0	0	11678	159	6	5	1865	5	PCSK7	11	117098987	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	64442	117098987	17907529	764	4126										
DSCAML1	0	genome.wustl.edu	37	chr11	117403166	117403166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttggtgatgcagcgataggTggagagggcgtcctccttct	15	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	117403166	117403166	T	G	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.763	p.T255P	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	122	1	0.79	56	19	25.33	-	-	-	G	117403166	T	G	117403166	3	3	67	1	0	0	0	0	1	0	0	0	4804	1696	59	5	5698	5	DSCAML1	11	117403166	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	304179	117403166	17603350	765	4127										
TMPRSS13	0	genome.wustl.edu	37	chr11	117789200	117789200	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgggtacagcccccactggTgttgctctaacaaggtacac	10	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	117789200	117789200	T	G	SNP	TMPRSS13	ENST00000445164	human	ensembl	69_37n	-1	known	silent	c.375	p.T125	0.039	pirsf_Peptidase_S1A_TMPRSS13	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_TMPRSS13,prints_Peptidase_S1A,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS13	HGNC	ENSG00000137747	176	0	0	133	16	10.74	-	-	-	G	117789200	T	G	117789200	2	3	67	1	0	0	0	0	0	0	0	1	16340	1683	59	5		5	TMPRSS13	11	117789200	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	386034	117789200	17217316	766	4128										
TMEM25	0	genome.wustl.edu	37	chr11	118403722	118403722	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtttgccctggtgcgtgccaAcccgccggccaatgtcacct	11	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	118403722	118403722	A	C	SNP	TMEM25	ENST00000533102	human	ensembl	69_37n	1	known	missense	c.473	p.N158T	1.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	TMEM25	HGNC	ENSG00000149582	134	1	0.74	60	11	15.49	-	-	-	C	118403722	A	C	118403722	3	2	67	1	0	0	0	0	1	0	0	0	16245	43	2	5	483	5	TMEM25	11	118403722	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	614522	118403722	16602794	767	4129										
BCL9L	0	genome.wustl.edu	37	chr11	118769686	118769686	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgttggggtgggccggatcAcctcgctcagctcggggtcg	17	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	118769686	118769686	A	C	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.3938	p.V1313G	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	41	0	0	32	11	23.91	-	-	-	C	118769686	A	C	118769686	3	2	67	1	0	0	0	0	1	0	0	0	1386	159	6	5	565	5	BCL9L	11	118769686	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	365964	118769686	16236830	768	4130										
BCL9L	0	genome.wustl.edu	37	chr11	118770852	118770852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggttcatgaggccgctgggAgggttggcgggaggtgctga	22	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	118770852	118770852	A	G	SNP	BCL9L	ENST00000525300	human	ensembl	69_37n	-1	novel	missense	c.1064	p.L355P	0.980	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCL9L	HGNC	ENSG00000186174	65	0	0	77	11	12.5	-	-	-	G	118770852	A	G	118770852	3	3	67	1	0	0	0	0	1	0	0	0	1386	291	11	5	1327	5	BCL9L	11	118770852	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1166	118770852	16235664	769	4131										
TRAPPC4	0	genome.wustl.edu	37	chr11	118895714	118895714	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgcacaaatcacttcagccAcccagaaggctgtgctccaa	7	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	118895714	118895714	A	C	SNP	TRAPPC4	ENST00000533058	human	ensembl	69_37n	1	putative	silent	c.729	p.P243	1.000	NULL	pfam_Sybindin,pfam_Sedlin,superfamily_Longin-like_dom	-	no_errors	TRAPPC4	HGNC	ENSG00000196655	74	0	0	39	5	11.36	-	-	-	C	118895714	A	C	118895714	2	2	67	1	0	0	0	0	0	0	0	1	16557	159	6	5		5	TRAPPC4	11	118895714	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	124862	118895714	16110802	770	4132										
C2CD2L	0	genome.wustl.edu	37	chr11	118984906	118984906	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttcacctccctcagacccAccagccatgtctccaggacc	5	20	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	118984906	118984906	A	C	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	silent	c.1743	p.P581	0.656	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	103	0	0	60	16	20.78	-	-	-	C	118984906	A	C	118984906	2	2	67	1	0	0	0	0	0	0	0	1	2173	146	6	5		5	C2CD2L	11	118984906	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	89192	118984906	16021610	771	4133										
ABCG4	0	genome.wustl.edu	37	chr11	119027364	119027364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gactcggcttgcattgccccAcctaccacaacccggctgac	8	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	119027364	119027364	A	C	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.901	p.T301P	1.000	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	98	1	1	74	23	23.71	-	-	-	C	119027364	A	C	119027364	3	2	67	1	0	0	0	0	1	0	0	0	70	159	6	5	927	5	ABCG4	11	119027364	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42458	119027364	15979152	772	4134										
PDZD3	0	genome.wustl.edu	37	chr11	119058162	119058162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggttttggcttcagtgtcAcccatggtgagcccagaggg	15	9	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	119058162	119058162	A	C	SNP	PDZD3	ENST00000392817	human	ensembl	69_37n	1	known	missense	c.712	p.T238P	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD3	HGNC	ENSG00000172367	57	0	0	26	7	21.21	-	-	-	C	119058162	A	C	119058162	3	2	67	1	0	0	0	0	1	0	0	0	11775	159	6	5	532	5	PDZD3	11	119058162	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	30798	119058162	15948354	773	4135										
PVRL1	0	genome.wustl.edu	37	chr11	119547861	119547861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttagcatcagctttgcaggTgagcttcacgtccatccgct	10	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	119547861	119547861	T	G	SNP	PVRL1	ENST00000264025	human	ensembl	69_37n	-1	known	missense	c.802	p.T268P	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL1	HGNC	ENSG00000110400	108	1	0.92	78	16	16.84	-	-	-	G	119547861	T	G	119547861	3	3	67	1	0	0	0	0	1	0	0	0	12922	1696	59	5	1209	5	PVRL1	11	119547861	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	489699	119547861	15458655	774	4136										
ARHGEF12	0	genome.wustl.edu	37	chr11	120349051	120349051	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatcgcaatcccagattcacAcctgcctgtctcagaagaac	6	14	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	120349051	120349051	A	C	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.3662	p.H1221P	0.985	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	42	0	0	38	13	25.49	-	-	-	C	120349051	A	C	120349051	3	2	67	1	0	0	0	0	1	0	0	0	899	159	6	5	3865	5	ARHGEF12	11	120349051	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	801190	120349051	14657465	775	4137										
GRIK4	0	genome.wustl.edu	37	chr11	120837987	120837987	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agatcctgaagcgcaaatggTgggaaggagggaagtgcccc	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	11	120837987	120837987	T	G	SNP	GRIK4	ENST00000527524	human	ensembl	69_37n	1	known	missense	c.2350	p.W784G	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	190	0	0	122	14	10.22	-	-	-	G	120837987	T	G	120837987	3	3	67	1	0	0	0	0	1	0	0	0	6827	1696	59	5	2416	5	GRIK4	11	120837987	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	488936	120837987	14168529	776	4138										
WNK1	0	genome.wustl.edu	37	chr12	1017844	1017844	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggacgggtggcccagcaccAcagccacttggccagttcca	13	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	1017844	1017844	A	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.8529	p.P2843	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	73	0	0	67	24	26.37	-	-	-	C	1017844	A	C	1017844	2	2	67	1	0	0	0	0	0	0	0	1	17474	146	6	5		5	WNK1	12	1017844	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		1017844	132834051	777	4139										
CACNA2D4	0	genome.wustl.edu	37	chr12	2027530	2027530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggccacgggcattggctggAggggaatccagcggctgctg	18	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	2027530	2027530	A	G	SNP	CACNA2D4	ENST00000382722	human	ensembl	69_37n	-1	known	missense	c.110	p.L37P	0.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062	91	0	0	55	16	22.54	-	-	-	G	2027530	A	G	2027530	3	3	67	1	0	0	0	0	1	0	0	0	2576	304	11	5	3455	5	CACNA2D4	12	2027530	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1009686	2027530	131824365	778	4140										
ITFG2	0	genome.wustl.edu	37	chr12	2929276	2929276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agatgggtgtcgtgagctggTggtgggctacacagaccgtg	18	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	2929276	2929276	T	G	SNP	ITFG2	ENST00000228799	human	ensembl	69_37n	1	known	missense	c.431	p.V144G	1.000	superfamily_WD40_repeat_dom	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203	222	1	0.45	155	21	11.86	-	-	-	G	2929276	T	G	2929276	3	3	67	1	0	0	0	0	1	0	0	0	7924	1696	59	5	449	5	ITFG2	12	2929276	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	901746	2929276	130922619	779	4141										
TSPAN9	0	genome.wustl.edu	37	chr12	3387650	3387650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtcccaaggcaactttgccAccttctcccccagcttccct	5	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	3387650	3387650	A	C	SNP	TSPAN9	ENST00000011898	human	ensembl	69_37n	1	known	missense	c.127	p.T43P	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN9	HGNC	ENSG00000011105	201	0	0	168	27	13.85	-	-	-	C	3387650	A	C	3387650	3	2	67	1	0	0	0	0	1	0	0	0	16750	159	6	5	133	5	TSPAN9	12	3387650	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	458374	3387650	130464245	780	4142										
NOP2	0	genome.wustl.edu	37	chr12	6669374	6669374	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtagaacgcagactggggTggaagcgcctttctcgaaag	16	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	6669374	6669374	T	G	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.1679	p.H560P	1.000	pfam_Fmu/NOL1/Nop2p,tigrfam_Nop2p	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	142	0	0	98	19	16.24	-	-	-	G	6669374	T	G	6669374	3	3	67	1	0	0	0	0	1	0	0	0	10610	1696	59	5	767	5	NOP2	12	6669374	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3281724	6669374	127182521	781	4143										
CHD4	0	genome.wustl.edu	37	chr12	6690831	6690831	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttaccagcaggtgggacaggTgcaggagtgttgggctgcgt	18	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	6690831	6690831	T	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.4749	p.A1583	0.367	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	390	1	0.25	274	41	13.02	-	-	-	G	6690831	T	G	6690831	2	3	67	1	0	0	0	0	0	0	0	1	3356	1683	59	5		5	CHD4	12	6690831	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21457	6690831	127161064	782	4144										
PTMS	0	genome.wustl.edu	37	chr12	6878794	6878794	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaggagaagaaggagaaggTggaggagaaggcaagccgga	20	3	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	6878794	6878794	T	G	SNP	PTMS	ENST00000389462	human	ensembl	69_37n	1	known	missense	c.71	p.V24G	1.000	pfam_Pro/parathymosin	pfam_Pro/parathymosin	-	no_errors	PTMS	HGNC	ENSG00000159335	531	2	0.37	317	51	13.78	-	-	-	G	6878794	T	G	6878794	3	3	67	1	0	0	0	0	1	0	0	0	12848	1696	59	5	77	5	PTMS	12	6878794	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	187963	6878794	126973101	783	4145										
USP5	0	genome.wustl.edu	37	chr12	6970210	6970210	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacagagaaggtgaagtacAcccagcgagttgactacatc	10	11	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	6970210	6970210	A	C	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.1438	p.T480P	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	95	0	0	85	20	19.05	-	-	-	C	6970210	A	C	6970210	3	2	67	1	0	0	0	0	1	0	0	0	17178	159	6	5	1484	5	USP5	12	6970210	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	91416	6970210	126881685	784	4146										
SPSB2	0	genome.wustl.edu	37	chr12	6981575	6981575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaccaccagcagtctctctGgcacctccagctgctcaccc	7	19	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	6981575	6981575	G	C	SNP	SPSB2	ENST00000523102	human	ensembl	69_37n	-1	known	missense	c.491	p.P164R	0.996	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB2	HGNC	ENSG00000111671	81	0	0	60	24	28.57	-	-	-	C	6981575	G	C	6981575	3	2	67	1	0	0	0	0	1	0	0	0	15204	1348	47	4	308	4	SPSB2	12	6981575	Missense_Mutation	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	11365	6981575	126870320	785	4147										
ATN1	0	genome.wustl.edu	37	chr12	7045659	7045659	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcattgcccagctacccccActctttccctcccccaacaa	4	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	7045659	7045659	A	C	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.1229	p.H410P	0.988	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	80	0	0	164	38	18.81	-	-	-	C	7045659	A	C	7045659	3	2	67	1	0	0	0	0	1	0	0	0	1115	159	6	5	1243	5	ATN1	12	7045659	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	64084	7045659	126806236	786	4148										
RBP5	0	genome.wustl.edu	37	chr12	7280933	7280933	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaaggtgctgagcgtcctcAccgtcatgtggttgccctgg	15	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	7280933	7280933	A	C	SNP	RBP5	ENST00000266560	human	ensembl	69_37n	-1	known	missense	c.155	p.V52G	0.999	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP5	HGNC	ENSG00000139194	180	1	0.54	179	23	11.39	-	-	-	C	7280933	A	C	7280933	3	2	67	1	0	0	0	0	1	0	0	0	13242	159	6	5	264	5	RBP5	12	7280933	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	235274	7280933	126570962	787	4149										
CLSTN3	0	genome.wustl.edu	37	chr12	7293957	7293957	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacaatggcctcatccacccAccccgaagggagcctgctct	9	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	7293957	7293957	A	C	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	silent	c.1443	p.P481	0.001	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	124	1	0.78	131	25	16.03	-	-	-	C	7293957	A	C	7293957	2	2	67	1	0	0	0	0	0	0	0	1	3593	146	6	5		5	CLSTN3	12	7293957	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13024	7293957	126557938	788	4150										
CD163L1	0	genome.wustl.edu	37	chr12	7559368	7559368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggtggcatacggtcccccAccttccttggattttcagct	9	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	7559368	7559368	A	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.847	p.W283G	0.983	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	242	1	0.41	288	38	11.62	-	-	-	C	7559368	A	C	7559368	3	2	67	1	0	0	0	0	1	0	0	0	2997	159	6	5	3574	5	CD163L1	12	7559368	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	265411	7559368	126292527	789	4151										
FOXJ2	0	genome.wustl.edu	37	chr12	8202045	8202045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgtgtgactccctcaaccActtccttactcagactggtc	6	15	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	8202045	8202045	A	C	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	missense	c.1415	p.H472P	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	159	1	0.61	43	10	18.87	-	-	-	C	8202045	A	C	8202045	3	2	67	1	0	0	0	0	1	0	0	0	6060	159	6	5	1445	5	FOXJ2	12	8202045	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	642677	8202045	125649850	790	4152										
RIMKLB	0	genome.wustl.edu	37	chr12	8866493	8866493	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtggctgccaagttgtggTttttgacagatcgtcgcatc	12	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	8866493	8866493	T	G	SNP	RIMKLB	ENST00000357529	human	ensembl	69_37n	1	known	missense	c.31	p.F11V	1.000	tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLB	HGNC	ENSG00000166532	351	2	0.56	286	33	10.34	-	-	-	G	8866493	T	G	8866493	3	3	67	1	0	0	0	0	1	0	0	0	13452	1725	60	5	33	5	RIMKLB	12	8866493	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	664448	8866493	124985402	791	4153										
A2ML1	0	genome.wustl.edu	37	chr12	8975286	8975286	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctaggaatgttggccctatcAccagccattgcagaagaact	9	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	8975286	8975286	A	C	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	silent	c.39	p.S13	0.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	128	1	0.78	138	28	16.77	-	-	-	C	8975286	A	C	8975286	2	2	67	1	0	0	0	0	0	0	0	1	5	146	6	5		5	A2ML1	12	8975286	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	108793	8975286	124876609	792	4154										
GRIN2B	0	genome.wustl.edu	37	chr12	13720038	13720038	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaactgccaatagaaaaggTgttcgcagatgaaggtgatg	14	5	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	13720038	13720038	T	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.2519	p.H840P	1.000	pfam_NMDAR2_C,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	182	0	0	142	18	11.25	-	-	-	G	13720038	T	G	13720038	3	3	67	1	0	0	0	0	1	0	0	0	6831	1696	59	5	1943	5	GRIN2B	12	13720038	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4744752	13720038	120131857	793	4155										
ATF7IP	0	genome.wustl.edu	37	chr12	14577417	14577417	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgtgtcccctggtgatgccAcctctggtgatgccactgct	11	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	14577417	14577417	A	C	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	missense	c.568	p.T190P	0.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	158	1	0.63	108	23	17.56	-	-	-	C	14577417	A	C	14577417	3	2	67	1	0	0	0	0	1	0	0	0	1091	159	6	5	570	5	ATF7IP	12	14577417	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	857379	14577417	119274478	794	4156										
DDX11	0	genome.wustl.edu	37	chr12	31250920	31250920	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagtggtcattgcggggggtAccatgcagccggtaaggaca	16	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	31250920	31250920	A	C	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.1864	p.T622P	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	197	1	0.5	160	37	18.78	-	-	-	C	31250920	A	C	31250920	3	2	67	1	0	0	0	0	1	0	0	0	4374	391	14	5	1930	5	DDX11	12	31250920	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	16673503	31250920	102600975	795	4157										
FGD4	0	genome.wustl.edu	37	chr12	32735053	32735053	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatacagataagactcagggTgcacagacttgtgtggccaa	12	8	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	32735053	32735053	T	G	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	silent	c.252	p.G84	0.022	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	138	1	0.71	86	22	20	-	-	-	G	32735053	T	G	32735053	2	3	67	1	0	0	0	0	0	0	0	1	5881	1683	59	5		5	FGD4	12	32735053	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1484133	32735053	101116842	796	4158										
SLC38A2	0	genome.wustl.edu	37	chr12	46764983	46764983	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttcagagcagcttgcttggTggggtaggagtagttgaagt	16	4	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	46764983	46764983	T	G	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	missense	c.94	p.T32P	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	215	0	0	216	27	11.11	-	-	-	G	46764983	T	G	46764983	3	3	67	1	0	0	0	0	1	0	0	0	14693	1696	59	5	1486	5	SLC38A2	12	46764983	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	14029930	46764983	87086912	797	4159										
SENP1	0	genome.wustl.edu	37	chr12	48491829	48491829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaaacctgtttgtggcaggAggtgggttttgaatacggag	16	4	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	48491829	48491829	A	G	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.83	p.L28P	0.975	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	287	2	0.69	185	43	18.86	-	-	-	G	48491829	A	G	48491829	3	3	67	1	0	0	0	0	1	0	0	0	14134	304	11	5	1912	5	SENP1	12	48491829	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1726846	48491829	85360066	798	4160										
PFKM	0	genome.wustl.edu	37	chr12	48526792	48526792	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagcctcactggggctgacAccttccgttctgagtggagt	13	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	48526792	48526792	A	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.379	p.T127P	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	103	0	0	48	18	27.27	-	-	-	C	48526792	A	C	48526792	3	2	67	1	0	0	0	0	1	0	0	0	11839	159	6	5	614	5	PFKM	12	48526792	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	34963	48526792	85325103	799	4161										
PFKM	0	genome.wustl.edu	37	chr12	48539459	48539459	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgcccacctggagcacatcAcccggaagcggtccggggaa	13	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	48539459	48539459	A	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.2311	p.T771P	0.735	NULL	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	126	1	0.79	85	15	14.85	-	-	-	C	48539459	A	C	48539459	3	2	67	1	0	0	0	0	1	0	0	0	11839	159	6	5	2618	5	PFKM	12	48539459	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12667	48539459	85312436	800	4162										
CACNB3	0	genome.wustl.edu	37	chr12	49220851	49220851	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttactggcgggccacgcaccAcccagcccctggccccggac	11	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	49220851	49220851	A	C	SNP	CACNB3	ENST00000301050	human	ensembl	69_37n	1	known	missense	c.1085	p.H362P	1.000	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	63	0	0	30	17	36.17	-	-	-	C	49220851	A	C	49220851	3	2	67	1	0	0	0	0	1	0	0	0	2579	159	6	5	1131	5	CACNB3	12	49220851	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	681392	49220851	84631044	801	4163										
MLL2	0	genome.wustl.edu	37	chr12	49445936	49445936	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctccagtggagaaaaaggTgatgattcaggtgggggaga	16	5	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	49445936	49445936	T	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.1530	p.S510	0.988	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	141	1	0.7	68	16	19.05	-	-	-	G	49445936	T	G	49445936	2	3	67	1	0	0	0	0	0	0	0	1	9692	1683	59	5		5	MLL2	12	49445936	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	225085	49445936	84405959	802	4164										
FAIM2	0	genome.wustl.edu	37	chr12	50295019	50295019	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggcttcctcataggagggTggggctgagggcactgctgg	19	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	50295019	50295019	T	G	SNP	FAIM2	ENST00000320634	human	ensembl	69_37n	-1	known	silent	c.105	p.P35	0.795	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	FAIM2	HGNC	ENSG00000135472	52	0	0	26	7	21.21	-	-	-	G	50295019	T	G	50295019	2	3	67	1	0	0	0	0	0	0	0	1	5416	1683	59	5		5	FAIM2	12	50295019	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	849083	50295019	83556876	803	4165										
BIN2	0	genome.wustl.edu	37	chr12	51685633	51685633	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcttgcagtggctctgggTggaggaggcctactaggggg	21	7	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	51685633	51685633	T	G	SNP	BIN2	ENST00000267012	human	ensembl	69_37n	-1	known	silent	c.1257	p.P419	0.993	NULL	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934	194	2	1	96	21	17.8	-	-	-	G	51685633	T	G	51685633	2	3	67	1	0	0	0	0	0	0	0	1	1438	1683	59	5		5	BIN2	12	51685633	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1390614	51685633	82166262	804	4166										
SLC4A8	0	genome.wustl.edu	37	chr12	51883518	51883518	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacctggacctactgatggTggccatcatgctgggtgtct	12	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	51883518	51883518	T	G	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	missense	c.2483	p.V828G	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	200	1	0.5	137	20	12.74	-	-	-	G	51883518	T	G	51883518	3	3	67	1	0	0	0	0	1	0	0	0	14748	1696	59	5	2557	5	SLC4A8	12	51883518	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	197885	51883518	81968377	805	4167										
ACVR1B	0	genome.wustl.edu	37	chr12	52370153	52370153	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccgtccatgtggggcccggTggagctggtaggcatcatcg	16	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	52370153	52370153	T	G	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	missense	c.374	p.V125G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	160	0	0	238	29	10.82	-	-	-	G	52370153	T	G	52370153	3	3	67	1	0	0	0	0	1	0	0	0	221	1696	59	5	384	5	ACVR1B	12	52370153	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	486635	52370153	81481742	806	4168										
NR4A1	0	genome.wustl.edu	37	chr12	52448895	52448895	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccggagcggggccccaggTggaagtgaaggccgctgtgc	19	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	52448895	52448895	T	G	SNP	NR4A1	ENST00000545748	human	ensembl	69_37n	1	known	silent	c.945	p.G315	0.604	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	61	0	0	43	8	15.69	-	-	-	G	52448895	T	G	52448895	2	3	67	1	0	0	0	0	0	0	0	1	10705	1683	59	5		5	NR4A1	12	52448895	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	78742	52448895	81403000	807	4169										
KRT83	0	genome.wustl.edu	37	chr12	52709711	52709711	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctccagcaggcgcctgtaggTggcgatctcgatatccaggc	13	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	52709711	52709711	T	G	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	missense	c.1228	p.T410P	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	84	0	0	61	10	14.08	-	-	-	G	52709711	T	G	52709711	3	3	67	1	0	0	0	0	1	0	0	0	8550	1696	59	5	265	5	KRT83	12	52709711	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	260816	52709711	81142184	808	4170										
KRT3	0	genome.wustl.edu	37	chr12	53189431	53189431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccaaagccaccagccccTccaaagccaccagcccctcc	4	24	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	53189431	53189431	T	C	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	silent	c.396	p.G132	0.032	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	600	5	0.82	576	76	11.59	-	-	-	C	53189431	T	C	53189431	2	2	67	1	0	0	0	0	0	0	0	1	8519	1538	54	5		5	KRT3	12	53189431	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	479720	53189431	80662464	809	4171										
KRT4	0	genome.wustl.edu	37	chr12	53203234	53203234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccttggcctccaactccAccttgttcaggtaggcagca	8	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	53203234	53203234	A	C	SNP	KRT4	ENST00000293774	human	ensembl	69_37n	-1	known	missense	c.989	p.V330G	1.000	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477	158	1	0.62	103	22	17.46	-	-	-	C	53203234	A	C	53203234	3	2	67	1	0	0	0	0	1	0	0	0	8530	159	6	5	819	5	KRT4	12	53203234	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13803	53203234	80648661	810	4172										
CSAD	0	genome.wustl.edu	37	chr12	53567205	53567205	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcccggagcaaggcttccAcagccactgggtccccagca	12	17	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	53567205	53567205	A	C	SNP	CSAD	ENST00000267085	human	ensembl	69_37n	-1	known	missense	c.131	p.V44G	0.172	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CSAD	HGNC	ENSG00000139631	106	1	0.93	73	12	14.12	-	-	-	C	53567205	A	C	53567205	3	2	67	1	0	0	0	0	1	0	0	0	3955	159	6	5	1487	5	CSAD	12	53567205	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	363971	53567205	80284690	811	4173										
ITGB7	0	genome.wustl.edu	37	chr12	53585710	53585710	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccggcggtcatagatttccAccgagagccggtaagccagg	13	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	53585710	53585710	A	C	SNP	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	missense	c.2249	p.V750G	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_cyt,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	112	1	0.88	77	18	18.95	-	-	-	C	53585710	A	C	53585710	3	2	67	1	0	0	0	0	1	0	0	0	7954	159	6	5	155	5	ITGB7	12	53585710	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	18505	53585710	80266185	812	4174										
AMHR2	0	genome.wustl.edu	37	chr12	53824046	53824046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgtccctacatcccatccAcctggcgctgctttgccaca	8	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	53824046	53824046	A	C	SNP	AMHR2	ENST00000257863	human	ensembl	69_37n	1	known	missense	c.1405	p.T469P	0.238	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	145	1	0.68	103	20	16	-	-	-	C	53824046	A	C	53824046	3	2	67	1	0	0	0	0	1	0	0	0	573	159	6	5	1443	5	AMHR2	12	53824046	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	238336	53824046	80027849	813	4175										
HOXC8	0	genome.wustl.edu	37	chr12	54405101	54405101	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcccgagatgaggagaaggTggaggaagaaggaaatgagg	19	3	0	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54405101	54405101	T	G	SNP	HOXC8	ENST00000040584	human	ensembl	69_37n	1	known	missense	c.665	p.V222G	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	HOXC8	HGNC	ENSG00000037965	340	2	0.58	238	37	13.45	-	-	-	G	54405101	T	G	54405101	3	3	67	1	0	0	0	0	1	0	0	0	7367	1696	59	5	671	5	HOXC8	12	54405101	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	581055	54405101	79446794	814	4176										
GPR84	0	genome.wustl.edu	37	chr12	54757388	54757388	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caccggtgcgccagtgcaggTggaggtaggtgtccacagag							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54757388	54757388	T	G	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.248	p.H83P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	271	1	0.36	140	35	20	-	-	-	G	54757388	T	G	54757388	3	3	67	1	0	0	0	0	1	0	0	0	6764	1696	59	5	946	5	GPR84	12	54757388	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	352287	54757388	79094507	815	4177	35	2								
GPR84	0	genome.wustl.edu	37	chr12	54757398	54757398	+	Missense_Mutation	SNP	T	T	G													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagtgcaggtggaggtaggTgtccacagagaagggctgaa							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54757398	54757398	T	G	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.238	p.T80P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	277	2	0.72	146	22	13.1	-	-	-	G	54757398	T	G	54757398	3	3	67	1	0	0	0	0	1	0	0	0	6764	1696	59	5	956	5	GPR84	12	54757398	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10	54757398	79094497	816	4178	35	2								
ZNF385A	0	genome.wustl.edu	37	chr12	54778214	54778214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggcaggctgctacttacggTgctgtagttgctgaagaggc	15	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54778214	54778214	T	G	SNP	ZNF385A	ENST00000338010	human	ensembl	69_37n	-1	known	missense	c.145	p.T49P	0.998	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642	150	1	0.65	110	25	18.38	-	-	-	G	54778214	T	G	54778214	3	3	67	1	0	0	0	0	1	0	0	0	17972	1696	59	5	1043	5	ZNF385A	12	54778214	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20816	54778214	79073681	817	4179										
NCKAP1L	0	genome.wustl.edu	37	chr12	54905822	54905822	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcagggctccctctacatcAcccttatccgtgaggatgtg	10	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54905822	54905822	A	C	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.874	p.T292P	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	202	0	0	214	38	15.08	-	-	-	C	54905822	A	C	54905822	3	2	67	1	0	0	0	0	1	0	0	0	10294	159	6	5	908	5	NCKAP1L	12	54905822	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	127608	54905822	78946073	818	4180										
PPP1R1A	0	genome.wustl.edu	37	chr12	54970872	54970872	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggagaggctcttcccaagTggggatgggttgaatgtagt	16	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54970872	54970872	T	G	SNP	PPP1R1A	ENST00000547431	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	43	0	0	16	4	20	-	-	-	G	54970872	T	G	54970872	1	3	67	0	1	0	0	0	0	0	0	0	12444	1711	59	5		5	PPP1R1A	12	54970872	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	65050	54970872	78881023	819	4181										
PPP1R1A	0	genome.wustl.edu	37	chr12	54975818	54975818	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgtgtctgggatcccaggTgggcgggactcctgggtttc	16	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	54975818	54975818	T	G	SNP	PPP1R1A	ENST00000257905	human	ensembl	69_37n	-1	known	silent	c.345	p.P115	0.998	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	137	0	0	99	18	15.25	-	-	-	G	54975818	T	G	54975818	2	3	67	1	0	0	0	0	0	0	0	1	12444	1683	59	5		5	PPP1R1A	12	54975818	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4946	54975818	78876077	820	4182										
METTL7B	0	genome.wustl.edu	37	chr12	56077678	56077678	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagcaagttttcgagcccAcctggaaacacattggggat	12	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56077678	56077678	A	C	SNP	METTL7B	ENST00000394252	human	ensembl	69_37n	1	known	missense	c.580	p.T194P	0.877	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	METTL7B	HGNC	ENSG00000170439	146	0	0	113	21	15.56	-	-	-	C	56077678	A	C	56077678	3	2	67	1	0	0	0	0	1	0	0	0	9577	159	6	5	586	5	METTL7B	12	56077678	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1101860	56077678	77774217	821	4183										
ORMDL2	0	genome.wustl.edu	37	chr12	56212797	56212797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctaggatgaatgtgggggTggcacacagcgaagtaaacc	16	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56212797	56212797	T	G	SNP	ORMDL2	ENST00000243045	human	ensembl	69_37n	1	known	missense	c.14	p.V5G	1.000	pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL2	HGNC	ENSG00000123353	151	0	0	81	32	28.32	-	-	-	G	56212797	T	G	56212797	3	3	67	1	0	0	0	0	1	0	0	0	11343	1696	59	5	16	5	ORMDL2	12	56212797	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	135119	56212797	77639098	822	4184										
DGKA	0	genome.wustl.edu	37	chr12	56346937	56346937	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccaagtgctctgagatcAccttccagtaaggaagactc	10	11	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56346937	56346937	A	C	SNP	DGKA	ENST00000331886	human	ensembl	69_37n	1	known	missense	c.2056	p.T686P	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357	128	1	0.78	91	21	18.75	-	-	-	C	56346937	A	C	56346937	3	2	67	1	0	0	0	0	1	0	0	0	4501	159	6	5	2138	5	DGKA	12	56346937	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	134140	56346937	77504958	823	4185										
ESYT1	0	genome.wustl.edu	37	chr12	56531112	56531112	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagcagtgtggatgccccAcctcgaccctgtcacacgac	11	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56531112	56531112	A	C	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	silent	c.1923	p.P641	0.984	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	221	2	0.9	145	29	16.48	-	-	-	C	56531112	A	C	56531112	2	2	67	1	0	0	0	0	0	0	0	1	5301	146	6	5		5	ESYT1	12	56531112	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	184175	56531112	77320783	824	4186										
SMARCC2	0	genome.wustl.edu	37	chr12	56563389	56563389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcgccaatgtcccgctccAcctttgtcttcctttccccc	4	21	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56563389	56563389	A	C	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.2546	p.V849G	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	145	1	0.68	199	30	13.1	-	-	-	C	56563389	A	C	56563389	3	2	67	1	0	0	0	0	1	0	0	0	14865	159	6	5	1118	5	SMARCC2	12	56563389	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	32277	56563389	77288506	825	4187										
PAN2	0	genome.wustl.edu	37	chr12	56720159	56720159	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagcccaccttcttcatggTgcgcagaatctctgcatcca	8	14	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56720159	56720159	T	G	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	missense	c.1297	p.T433P	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	72	0	0	43	8	15.69	-	-	-	G	56720159	T	G	56720159	3	3	67	1	0	0	0	0	1	0	0	0	11487	1696	59	5	2387	5	PAN2	12	56720159	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	156770	56720159	77131736	826	4188										
RBMS2	0	genome.wustl.edu	37	chr12	56982747	56982747	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaacagaaccaagtggcagTggacgcaccctcagagcatg	11	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	56982747	56982747	T	G	SNP	RBMS2	ENST00000262031	human	ensembl	69_37n	1	known	missense	c.1175	p.V392G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMS2	HGNC	ENSG00000076067	225	0	0	94	13	12.15	-	-	-	G	56982747	T	G	56982747	3	3	67	1	0	0	0	0	1	0	0	0	13232	1696	59	5	1225	5	RBMS2	12	56982747	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	262588	56982747	76869148	827	4189										
NACA	0	genome.wustl.edu	37	chr12	57113341	57113341	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttggcagttgtgggagccAccccggcagggtcagcactt	14	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57113341	57113341	A	C	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.1973	p.V658G	0.002	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	70	0	0	36	10	21.28	-	-	-	C	57113341	A	C	57113341	3	2	67	1	0	0	0	0	1	0	0	0	10205	159	6	5	4291	5	NACA	12	57113341	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	130594	57113341	76738554	828	4190										
NACA	0	genome.wustl.edu	37	chr12	57114602	57114602	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggggaagcgatggctagggTagttgtgggtgttgtctgag	20	3	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57114602	57114602	T	G	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.712	p.T238P	0.161	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	197	2	0.99	120	26	17.69	-	-	-	G	57114602	T	G	57114602	3	3	67	1	0	0	0	0	1	0	0	0	10205	1638	57	5	5552	5	NACA	12	57114602	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1261	57114602	76737293	829	4191										
MYO1A	0	genome.wustl.edu	37	chr12	57422605	57422605	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtagcttgctgttgtcaccAcctgcagggccctggacgac	12	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57422605	57422605	A	C	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	silent	c.3066	p.G1022	0.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	122	1	0.81	141	34	19.32	-	-	-	C	57422605	A	C	57422605	2	2	67	1	0	0	0	0	0	0	0	1	10140	146	6	5		5	MYO1A	12	57422605	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	308003	57422605	76429290	830	4192										
LRP1	0	genome.wustl.edu	37	chr12	57598231	57598231	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgagttccagtgcaacaacAccttgtgcaagccgctggcc	10	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57598231	57598231	A	C	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.10990	p.T3664P	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	147	1	0.66	75	16	17.58	-	-	-	C	57598231	A	C	57598231	3	2	67	1	0	0	0	0	1	0	0	0	9017	159	6	5	11272	5	LRP1	12	57598231	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	175626	57598231	76253664	831	4193										
R3HDM2	0	genome.wustl.edu	37	chr12	57663603	57663603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggtggtgcatggctagaggTggaatagttggaagtgggga	20	2	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57663603	57663603	T	G	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.1477	p.T493P	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	278	1	0.36	201	43	17.62	-	-	-	G	57663603	T	G	57663603	3	3	67	1	0	0	0	0	1	0	0	0	12971	1696	59	5	1493	5	R3HDM2	12	57663603	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	65372	57663603	76188292	832	4194										
INHBE	0	genome.wustl.edu	37	chr12	57849975	57849975	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggctgcacgtgctccccAcccttcctggcactctttgc	9	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57849975	57849975	A	C	SNP	INHBE	ENST00000266646	human	ensembl	69_37n	1	known	missense	c.397	p.T133P	0.967	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269	98	1	0.98	83	20	19.42	-	-	-	C	57849975	A	C	57849975	3	2	67	1	0	0	0	0	1	0	0	0	7798	159	6	5	403	5	INHBE	12	57849975	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	186372	57849975	76001920	833	4195										
MARS	0	genome.wustl.edu	37	chr12	57892008	57892008	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttacgtcaacaatgtcccccAccttgggaacatcattggtt	7	12	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57892008	57892008	A	C	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.839	p.H280P	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	203	1	0.49	210	27	11.3	-	-	-	C	57892008	A	C	57892008	3	2	67	1	0	0	0	0	1	0	0	0	9387	159	6	5	869	5	MARS	12	57892008	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42033	57892008	75959887	834	4196										
DCTN2	0	genome.wustl.edu	37	chr12	57928141	57928141	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcccagcagcttctccaggTgggaagcaaccagctgctgc	12	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57928141	57928141	T	G	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	missense	c.473	p.H158P	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	109	0	0	59	17	22.37	-	-	-	G	57928141	T	G	57928141	3	3	67	1	0	0	0	0	1	0	0	0	4338	1696	59	5	783	5	DCTN2	12	57928141	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	36133	57928141	75923754	835	4197										
PIP4K2C	0	genome.wustl.edu	37	chr12	57987893	57987893	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caagatcaaggtcaacaatcAccttttccacaggtaagtga	7	10	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	57987893	57987893	A	C	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	missense	c.260	p.H87P	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	120	0	0	105	28	21.05	-	-	-	C	57987893	A	C	57987893	3	2	67	1	0	0	0	0	1	0	0	0	12012	159	6	5	266	5	PIP4K2C	12	57987893	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	59752	57987893	75864002	836	4198										
AGAP2	0	genome.wustl.edu	37	chr12	58135793	58135793	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtttagagcctgcttggccAcctcatgtcgtctgacttct	10	12	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	58135793	58135793	A	C	SNP	AGAP2	ENST00000257897	human	ensembl	69_37n	-1	known	missense	c.62	p.V21G	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	127	0	0	123	18	12.77	-	-	-	C	58135793	A	C	58135793	3	2	67	1	0	0	0	0	1	0	0	0	368	159	6	5	3756	5	AGAP2	12	58135793	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	147900	58135793	75716102	837	4199										
CYP27B1	0	genome.wustl.edu	37	chr12	58158219	58158219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggacagaacagtggctgAggggtaggcactggagccag	18	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	58158219	58158219	A	G	SNP	CYP27B1	ENST00000228606	human	ensembl	69_37n	-1	known	missense	c.1078	p.S360P	0.023	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012	71	0	0	74	14	15.73	-	-	-	G	58158219	A	G	58158219	3	3	67	1	0	0	0	0	1	0	0	0	4190	304	11	5	464	5	CYP27B1	12	58158219	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	22426	58158219	75693676	838	4200										
PHLDA1	0	genome.wustl.edu	37	chr12	76424350	76424350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggtgctgcggagaagccggTgcccgtgcggctgcgagtgc	19	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	76424350	76424350	T	G	SNP	PHLDA1	ENST00000266671	human	ensembl	69_37n	-1	known	missense	c.1172	p.H391P	1.000	NULL	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289	320	2	0.61	312	37	10.51	-	-	-	G	76424350	T	G	76424350	3	3	67	1	0	0	0	0	1	0	0	0	11922	1696	59	5	37	5	PHLDA1	12	76424350	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	18266131	76424350	57427545	839	4201										
MYF5	0	genome.wustl.edu	37	chr12	81111311	81111311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacagagctgctcggagcccAccagccccacctccaactgc	9	19	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	81111311	81111311	A	C	SNP	MYF5	ENST00000228644	human	ensembl	69_37n	1	known	missense	c.469	p.T157P	1.000	pfam_Myf5,superfamily_HLH_DNA-bd	pfam_Basic,pfam_Myf5,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF5	HGNC	ENSG00000111049	96	0	0	40	11	21.57	-	-	-	C	81111311	A	C	81111311	3	2	67	1	0	0	0	0	1	0	0	0	10099	159	6	5	471	5	MYF5	12	81111311	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4686961	81111311	52740584	840	4202										
PAH	0	genome.wustl.edu	37	chr12	103246667	103246667	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagactcggaaggccaggccAcccaagaaatcccgagagga	12	12	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	103246667	103246667	A	C	SNP	PAH	ENST00000553106	human	ensembl	69_37n	-1	known	silent	c.768	p.G256	0.977	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759	220	1	0.45	110	21	16.03	-	-	-	C	103246667	A	C	103246667	2	2	67	1	0	0	0	0	0	0	0	1	11467	146	6	5		5	PAH	12	103246667	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	22135356	103246667	30605228	841	4203										
CRY1	0	genome.wustl.edu	37	chr12	107391781	107391781	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgaaaaaaggaactacaagAcagccacatccaacttccag	6	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	107391781	107391781	A	C	SNP	CRY1	ENST00000008527	human	ensembl	69_37n	-1	known	missense	c.1201	p.S401A	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405	141	0	0	111	19	14.62	-	-	-	C	107391781	A	C	107391781	3	2	67	1	0	0	0	0	1	0	0	0	3933	275	10	5	579	5	CRY1	12	107391781	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4145114	107391781	26460114	842	4204										
ACACB	0	genome.wustl.edu	37	chr12	109690861	109690861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acatccaacaaccagctgggTggcgttcagatcatgcatta	9	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	109690861	109690861	T	G	SNP	ACACB	ENST00000538526	human	ensembl	69_37n	1	known	missense	c.1942	p.W648G	0.486	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_Carboxyl_trans,pfam_AcCoA_COase_cen,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACACB	HGNC	ENSG00000076555	149	0	0	136	25	15.43	-	-	-	G	109690861	T	G	109690861	3	3	67	1	0	0	0	0	1	0	0	0	107	1683	59	5	6109	5	ACACB	12	109690861	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2299080	109690861	24161034	843	4205										
MYO1H	0	genome.wustl.edu	37	chr12	109831243	109831243	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcaatttctttgaactgccAccacatgtgtaagtagcatc	7	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	109831243	109831243	A	C	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	silent	c.234	p.P78	0.975	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	124	0	0	171	25	12.69	-	-	-	C	109831243	A	C	109831243	2	2	67	1	0	0	0	0	0	0	0	1	10147	146	6	5		5	MYO1H	12	109831243	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	140382	109831243	24020652	844	4206										
GPN3	0	genome.wustl.edu	37	chr12	110902884	110902884	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccttactgttcctgaaggTggggggagcctttgctcagg	15	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	110902884	110902884	T	G	SNP	GPN3	ENST00000547323	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.129	-	-	-	no_errors	GPN3	HGNC	ENSG00000111231	96	0	0	114	31	21.23	-	-	-	G	110902884	T	G	110902884	1	3	67	0	1	0	0	0	0	0	0	0	6669	1711	59	5		5	GPN3	12	110902884	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1071641	110902884	22949011	845	4207										
SH2B3	0	genome.wustl.edu	37	chr12	111885877	111885877	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcagagttgggccttccccAccttagttcttctggctgtc	9	13	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	111885877	111885877	A	C	SNP	SH2B3	ENST00000538307	human	ensembl	69_37n	1	known	missense	c.893	p.H298P	0.889	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252	191	0	0	204	28	12.07	-	-	-	C	111885877	A	C	111885877	3	2	67	1	0	0	0	0	1	0	0	0	14317	159	6	5	1525	5	SH2B3	12	111885877	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	982993	111885877	21966018	846	4208										
ATXN2	0	genome.wustl.edu	37	chr12	111891575	111891575	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcggcctggggaccgccgggTggctgtgtcgtcattagcat	17	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	111891575	111891575	T	G	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	silent	c.3819	p.P1273	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	201	0	0	142	20	12.35	-	-	-	G	111891575	T	G	111891575	2	3	67	1	0	0	0	0	0	0	0	1	1215	1683	59	5		5	ATXN2	12	111891575	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5698	111891575	21960320	847	4209										
ATXN2	0	genome.wustl.edu	37	chr12	111893857	111893857	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtacgtgggccatgtggggTgggttggtatacgccggctg	20	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	111893857	111893857	T	G	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	silent	c.3720	p.P1240	0.975	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	367	2	0.53	319	44	12.05	-	-	-	G	111893857	T	G	111893857	2	3	67	1	0	0	0	0	0	0	0	1	1215	1683	59	5		5	ATXN2	12	111893857	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2282	111893857	21958038	848	4210										
OAS3	0	genome.wustl.edu	37	chr12	113405882	113405882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcacggtcctggagctggtcAcccagtaccgccagctctgt	12	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	113405882	113405882	A	C	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	missense	c.3007	p.T1003P	0.001	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	90	0	0	45	12	21.05	-	-	-	C	113405882	A	C	113405882	3	2	67	1	0	0	0	0	1	0	0	0	10874	159	6	5	3061	5	OAS3	12	113405882	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1512025	113405882	20446013	849	4211										
CCDC42B	0	genome.wustl.edu	37	chr12	113593185	113593185	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcatcaggggcagcctcccAccctggacatcgaggacacg	12	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	113593185	113593185	A	C	SNP	CCDC42B	ENST00000335621	human	ensembl	69_37n	1	known	missense	c.811	p.T271P	0.000	NULL	NULL	-	no_errors	CCDC42B	HGNC	ENSG00000186710	83	0	0	40	11	21.57	-	-	-	C	113593185	A	C	113593185	3	2	67	1	0	0	0	0	1	0	0	0	2841	159	6	5	833	5	CCDC42B	12	113593185	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	187303	113593185	20258710	850	4212										
CCDC42B	0	genome.wustl.edu	37	chr12	113595408	113595408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgtgctgggcccccccaggTgaagctgttcatgcaggacc	13	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	113595408	113595408	T	G	SNP	CCDC42B	ENST00000335621	human	ensembl	69_37n	1	known	missense	c.851	p.V284G	1.000	NULL	NULL	-	no_errors	CCDC42B	HGNC	ENSG00000186710	62	0	0	41	14	25.45	-	-	-	G	113595408	T	G	113595408	3	3	67	1	0	0	0	0	1	0	0	0	2841	1710	59	5	877	5	CCDC42B	12	113595408	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2223	113595408	20256487	851	4213										
IQCD	0	genome.wustl.edu	37	chr12	113645596	113645596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaggaggcggtctctgagccAcccttcctcctcagcctctt	9	16	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	113645596	113645596	A	C	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	missense	c.376	p.W126G	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	134	1	0.74	81	14	14.58	-	-	-	C	113645596	A	C	113645596	3	2	67	1	0	0	0	0	1	0	0	0	7859	159	6	5	675	5	IQCD	12	113645596	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	50188	113645596	20206299	852	4214										
SDSL	0	genome.wustl.edu	37	chr12	113875868	113875868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgcaggctttgaaaacccAcctgggccaggtctgagggg	15	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	113875868	113875868	A	C	SNP	SDSL	ENST00000345635	human	ensembl	69_37n	1	known	missense	c.974	p.H325P	0.998	superfamily_PyrdxlP-dep_enz_bsu	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	SDSL	HGNC	ENSG00000139410	91	0	0	54	17	23.61	-	-	-	C	113875868	A	C	113875868	3	2	67	1	0	0	0	0	1	0	0	0	14064	159	6	5	1000	5	SDSL	12	113875868	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	230272	113875868	19976027	853	4215										
RBM19	0	genome.wustl.edu	37	chr12	114397982	114397982	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgaatgacttgcagaactccAcctgtgtgggaaagagagtg	13	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	114397982	114397982	A	C	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.221	p.V74G	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	149	1	0.66	186	38	16.96	-	-	-	C	114397982	A	C	114397982	3	2	67	1	0	0	0	0	1	0	0	0	13204	173	6	5	2749	5	RBM19	12	114397982	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	522114	114397982	19453913	854	4216										
CIT	0	genome.wustl.edu	37	chr12	120135488	120135488	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaggtggacgggccccggTggtgttcagtgccggactcc	19	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	120135488	120135488	T	G	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.5732	p.H1911P	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	160	1	0.61	115	28	19.58	-	-	-	G	120135488	T	G	120135488	3	3	67	1	0	0	0	0	1	0	0	0	3468	1696	59	5	363	5	CIT	12	120135488	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5737506	120135488	13716407	855	4217										
RAB35	0	genome.wustl.edu	37	chr12	120536706	120536706	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggcatcttccgtctccaccAccttccgctcagggtcgtca	8	17	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	120536706	120536706	A	C	SNP	RAB35	ENST00000229340	human	ensembl	69_37n	-1	known	missense	c.386	p.V129G	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB35	HGNC	ENSG00000111737	131	1	0.74	121	28	18.79	-	-	-	C	120536706	A	C	120536706	3	2	67	1	0	0	0	0	1	0	0	0	13008	159	6	5	227	5	RAB35	12	120536706	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	401218	120536706	13315189	856	4218										
MSI1	0	genome.wustl.edu	37	chr12	120791117	120791117	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttaccggggaactggtaggTgtagccaggggcgaggcctg	18	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	120791117	120791117	T	G	SNP	MSI1	ENST00000257552	human	ensembl	69_37n	-1	known	missense	c.718	p.T240P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097	126	0	0	82	15	15.31	-	-	-	G	120791117	T	G	120791117	3	3	67	1	0	0	0	0	1	0	0	0	9947	1696	59	5	390	5	MSI1	12	120791117	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	254411	120791117	13060778	857	4219										
ACADS	0	genome.wustl.edu	37	chr12	121175726	121175726	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggaaccaaagcctggatcAccaatgcctgggaggcttcg	12	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	121175726	121175726	A	C	SNP	ACADS	ENST00000242592	human	ensembl	69_37n	1	known	missense	c.559	p.T187P	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971	56	0	0	40	9	18.37	-	-	-	C	121175726	A	C	121175726	3	2	67	1	0	0	0	0	1	0	0	0	114	159	6	5	577	5	ACADS	12	121175726	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	384609	121175726	12676169	858	4220										
MORN3	0	genome.wustl.edu	37	chr12	122107341	122107341	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctctgggccttccggtcccAccccttccacagggactccg	9	20	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	122107341	122107341	A	C	SNP	MORN3	ENST00000355329	human	ensembl	69_37n	-1	known	missense	c.49	p.W17G	0.971	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714	92	0	0	140	29	17.16	-	-	-	C	122107341	A	C	122107341	3	2	67	1	0	0	0	0	1	0	0	0	9781	159	6	5	693	5	MORN3	12	122107341	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	931615	122107341	11744554	859	4221										
HPD	0	genome.wustl.edu	37	chr12	122287671	122287671	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgatgtagttcatcttctccAccagggtgtgtgtggtgtcc	12	10	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	122287671	122287671	A	C	SNP	HPD	ENST00000289004	human	ensembl	69_37n	-1	known	missense	c.440	p.V147G	1.000	pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104	157	0	0	110	21	15.67	-	-	-	C	122287671	A	C	122287671	3	2	67	1	0	0	0	0	1	0	0	0	7383	159	6	5	769	5	HPD	12	122287671	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	180330	122287671	11564224	860	4222										
CLIP1	0	genome.wustl.edu	37	chr12	122812693	122812693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgacactggttgtggcttGtttccattttcttttcctgc	8	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	122812693	122812693	G	T	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.3050	p.T1017K	0.001	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	193	0	0	261	50	16.08	-	-	-	T	122812693	G	T	122812693	3	4	67	1	0	0	0	0	1	0	0	0	3562	1377	48	4	1306	4	CLIP1	12	122812693	Missense_Mutation	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	525022	122812693	11039202	861	4223										
NCOR2	0	genome.wustl.edu	37	chr12	124882663	124882663	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaagccgccacacacccctcAcctttcttggctgtttccat	5	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	124882663	124882663	A	C	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	splice_site	c.1876+2	e16+2	0.999	-	-	-	no_errors	NCOR2	HGNC	ENSG00000196498	437	4	0.89	267	33	10.89	-	-	-	C	124882663	A	C	124882663	5	2	67	1	0	0	0	0	0	0	1	0	10308	173	6	5	5818	5	NCOR2	12	124882663	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2069970	124882663	8969232	862	4224										
ULK1	0	genome.wustl.edu	37	chr12	132392051	132392051	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcttgcagtactgcaacggTggggacctggccgactacct	12	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	132392051	132392051	T	G	SNP	ULK1	ENST00000321867	human	ensembl	69_37n	1	known	silent	c.291	p.G97	0.460	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	81	0	0	33	5	13.16	-	-	-	G	132392051	T	G	132392051	2	3	67	1	0	0	0	0	0	0	0	1	17072	1683	59	5		5	ULK1	12	132392051	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7509388	132392051	1459844	863	4225										
EP400	0	genome.wustl.edu	37	chr12	132502157	132502157	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgcagcgcatctgcaaccAccctgggctcgtcgagcccc	11	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	132502157	132502157	A	C	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.4109	p.H1370P	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	43	0	0	25	8	23.53	-	-	-	C	132502157	A	C	132502157	3	2	67	1	0	0	0	0	1	0	0	0	5186	159	6	5	4072	5	EP400	12	132502157	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	110106	132502157	1349738	864	4226										
EP400	0	genome.wustl.edu	37	chr12	132514309	132514309	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctacgggtgccgcggccgccAcccctgtacagccacagaat	11	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	132514309	132514309	A	C	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	silent	c.5553	p.P1851	0.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	62	0	0	26	12	31.58	-	-	-	C	132514309	A	C	132514309	2	2	67	1	0	0	0	0	0	0	0	1	5186	146	6	5		5	EP400	12	132514309	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12152	132514309	1337586	865	4227										
EP400	0	genome.wustl.edu	37	chr12	132539697	132539697	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgcaggggtcccagctgccAccttccagtccatcaacaag	9	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	132539697	132539697	A	C	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.7936	p.T2646P	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	131	1	0.75	50	12	19.35	-	-	-	C	132539697	A	C	132539697	3	2	67	1	0	0	0	0	1	0	0	0	5186	159	6	5	7999	5	EP400	12	132539697	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	25388	132539697	1312198	866	4228										
POLE	0	genome.wustl.edu	37	chr12	133218851	133218851	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgtcatcagcctcctttccAcccaggtcagggcgggctgt	11	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	133218851	133218851	A	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.5118	p.G1706	0.068	pfam_DNA_pol_e_suA_C	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	182	1	0.54	113	18	13.74	-	-	-	C	133218851	A	C	133218851	2	2	67	1	0	0	0	0	0	0	0	1	12270	146	6	5		5	POLE	12	133218851	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	679154	133218851	633044	867	4229										
POLE	0	genome.wustl.edu	37	chr12	133252388	133252388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcctggacgtgttcaaaccAcctttggatcagatgagcct	9	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	133252388	133252388	A	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.1072	p.W358G	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	91	0	0	76	20	20.83	-	-	-	C	133252388	A	C	133252388	3	2	67	1	0	0	0	0	1	0	0	0	12270	159	6	5	5977	5	POLE	12	133252388	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	33537	133252388	599507	868	4230										
CHFR	0	genome.wustl.edu	37	chr12	133448755	133448755	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgtgagcaagaaatggggTgtagccaggaggaacgttcc	15	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	12	133448755	133448755	T	G	SNP	CHFR	ENST00000536196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	46	0	0	22	9	29.03	-	-	-	G	133448755	T	G	133448755	1	3	67	0	1	0	0	0	0	0	0	0	3366	1711	59	5		5	CHFR	12	133448755	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	196367	133448755	403140	869	4231										
TUBA3C	0	genome.wustl.edu	37	chr13	19752498	19752498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggtgatcagctgctctgggTggaagagctgcctataggtt	15	8	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	19752498	19752498	T	G	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	missense	c.263	p.H88P	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	175	0	0	136	29	17.58	-	-	-	G	19752498	T	G	19752498	3	3	67	1	0	0	0	0	1	0	0	0	16843	1696	59	5	1101	5	TUBA3C	13	19752498	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		19752498	95417380	870	4232										
XPO4	0	genome.wustl.edu	37	chr13	21361137	21361137	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accaacgtgtagaaagcttcGccagccgcagtggtcatctc	10	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	21361137	21361137	G	C	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	silent	c.3225	p.G1075	0.009	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	234	2	0.84	109	27	19.85	-	-	-	C	21361137	G	C	21361137	2	2	67	1	0	0	0	0	0	0	0	1	17543	1074	38	3		3	XPO4	13	21361137	Silent	SNP	G	TCGA-A2-A0T5-01A-21D-A099-09	1608639	21361137	93808741	871	4233										
LATS2	0	genome.wustl.edu	37	chr13	21549155	21549155	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcaaagaaccttcggaaggTgaattcgtaaaatgcgtgct	10	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	21549155	21549155	T	G	SNP	LATS2	ENST00000382592	human	ensembl	69_37n	-1	known	missense	c.3121	p.T1041P	1.000	pfam_Pkinase_C,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	277	0	0	195	24	10.96	-	-	-	G	21549155	T	G	21549155	3	3	67	1	0	0	0	0	1	0	0	0	8701	1696	59	5	149	5	LATS2	13	21549155	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	188018	21549155	93620723	872	4234										
RNF17	0	genome.wustl.edu	37	chr13	25424488	25424488	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttctgttgtagaccagctggTgggagtgacaagtggacagc	15	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	25424488	25424488	T	G	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	silent	c.3111	p.G1037	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	182	0	0	190	34	15.18	-	-	-	G	25424488	T	G	25424488	2	3	67	1	0	0	0	0	0	0	0	1	13547	1683	59	5		5	RNF17	13	25424488	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3875333	25424488	89745390	873	4235										
FLT1	0	genome.wustl.edu	37	chr13	28942781	28942781	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgatgacgatgacgatggTgacgttgatgtatacagttc	13	5	0	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	28942781	28942781	T	G	SNP	FLT1	ENST00000541932	human	ensembl	69_37n	-1	known	silent	c.2136	p.S712	0.002	smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	302	0	0	267	35	11.59	-	-	-	G	28942781	T	G	28942781	2	3	67	1	0	0	0	0	0	0	0	1	5987	1683	59	5		5	FLT1	13	28942781	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3518293	28942781	86227097	874	4236										
SOHLH2	0	genome.wustl.edu	37	chr13	36748877	36748877	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctgggccataacggctggAgagattttctcccggatata	11	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	36748877	36748877	A	G	SNP	SOHLH2	ENST00000554962	human	ensembl	69_37n	-1	known	silent	c.1002	p.S334	0.996	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH2	HGNC	ENSG00000120669	201	0	0	137	40	22.47	-	-	-	G	36748877	A	G	36748877	2	3	67	1	0	0	0	0	0	0	0	1	15013	291	11	5		5	SOHLH2	13	36748877	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7806096	36748877	78421001	875	4237										
TSC22D1	0	genome.wustl.edu	37	chr13	45149603	45149603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caacattctgttgtggaaggTgaggcaaatgaggctgagga	15	5	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	45149603	45149603	T	G	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.608	p.H203P	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	195	1	0.51	88	15	14.42	-	-	-	G	45149603	T	G	45149603	3	3	67	1	0	0	0	0	1	0	0	0	16703	1696	59	5	2754	5	TSC22D1	13	45149603	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8400726	45149603	70020275	876	4238										
LRCH1	0	genome.wustl.edu	37	chr13	47127611	47127611	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcacccacttcatcatccccAccaccaccaccaccaccatc	1	24	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	47127611	47127611	A	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.80	p.H27P	0.972	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	22	0	0	10	6	37.5	-	-	-	C	47127611	A	C	47127611	3	2	67	1	0	0	0	0	1	0	0	0	8998	159	6	5	82	5	LRCH1	13	47127611	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1978008	47127611	68042267	877	4239										
LRCH1	0	genome.wustl.edu	37	chr13	47303080	47303080	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggtcaaccacatccgcccAcggtcggttgcaagcatcca	9	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	47303080	47303080	A	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	silent	c.1863	p.P621	0.111	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	163	0	0	124	18	12.59	-	-	-	C	47303080	A	C	47303080	2	2	67	1	0	0	0	0	0	0	0	1	8998	146	6	5		5	LRCH1	13	47303080	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	175469	47303080	67866798	878	4240										
RCBTB1	0	genome.wustl.edu	37	chr13	50123782	50123782	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacaggctgcaatctctaccAccctgaaaagttttaagaaa	7	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	50123782	50123782	A	C	SNP	RCBTB1	ENST00000258646	human	ensembl	69_37n	-1	known	missense	c.857	p.V286G	0.998	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_Reg_chr_condens,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	109	0	0	33	4	10.81	-	-	-	C	50123782	A	C	50123782	3	2	67	1	0	0	0	0	1	0	0	0	13254	159	6	5	758	5	RCBTB1	13	50123782	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2820702	50123782	65046096	879	4241										
SCEL	0	genome.wustl.edu	37	chr13	78143537	78143537	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttcattgaatgccaacaccTccaacaccatagcatccact	4	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	78143537	78143537	T	C	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.430	p.S144P	0.001	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	148	0	0	149	18	10.78	-	-	-	C	78143537	T	C	78143537	3	2	67	1	0	0	0	0	1	0	0	0	13975	1551	54	5	456	5	SCEL	13	78143537	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28019755	78143537	37026341	880	4242										
ABCC4	0	genome.wustl.edu	37	chr13	95735507	95735507	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgatccaaggaatcacggccAcagccacagagaccacacca	8	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	95735507	95735507	A	C	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.2573	p.V858G	0.123	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	217	1	0.46	129	21	14	-	-	-	C	95735507	A	C	95735507	3	2	67	1	0	0	0	0	1	0	0	0	55	159	6	5	1448	5	ABCC4	13	95735507	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	17591970	95735507	19434371	881	4243										
COL4A1	0	genome.wustl.edu	37	chr13	110813606	110813606	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgggcatgggctcaggggTggacagccagtacgagtagt	17	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	110813606	110813606	T	G	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.4573	p.T1525P	0.998	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	170	0	0	163	19	10.44	-	-	-	G	110813606	T	G	110813606	3	3	67	1	0	0	0	0	1	0	0	0	3719	1696	59	5	452	5	COL4A1	13	110813606	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	15078099	110813606	4356272	882	4244										
COL4A1	0	genome.wustl.edu	37	chr13	110845184	110845184	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgtgggtcttacctatttcTcccgggggtccctgtggccc	12	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	110845184	110845184	T	C	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	silent	c.1458	p.G486	0.999	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	152	0	0	118	23	16.2	-	-	-	C	110845184	T	C	110845184	2	2	67	1	0	0	0	0	0	0	0	1	3719	1538	54	5		5	COL4A1	13	110845184	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	31578	110845184	4324694	883	4245										
ARHGEF7	0	genome.wustl.edu	37	chr13	111919984	111919984	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcacgtattgtgccaatcAcccttctgcagtgaatgtcc	7	14	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	13	111919984	111919984	A	C	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	missense	c.1103	p.H368P	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	183	1	0.54	152	24	13.56	-	-	-	C	111919984	A	C	111919984	3	2	67	1	0	0	0	0	1	0	0	0	913	159	6	5	1141	5	ARHGEF7	13	111919984	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1074800	111919984	3249894	884	4246										
PARP2	0	genome.wustl.edu	37	chr14	20813206	20813206	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaaaagatgcctgtggctggAggaaaagctaataaggacag	13	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	20813206	20813206	A	G	SNP	PARP2	ENST00000250416	human	ensembl	69_37n	1	known	silent	c.162	p.G54	0.005	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484	245	2	0.81	186	53	22.08	-	-	-	G	20813206	A	G	20813206	2	3	67	1	0	0	0	0	0	0	0	1	11534	291	11	5		5	PARP2	14	20813206	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		20813206	86536334	885	4247										
TEP1	0	genome.wustl.edu	37	chr14	20851645	20851645	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccacctccttctcacactcAcccggggaagcttctttggg	8	17	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	20851645	20851645	A	C	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	splice_site	c.3867+2	e25+2	1.000	-	-	-	no_errors	TEP1	HGNC	ENSG00000129566	123	1	0.81	101	21	17.21	-	-	-	C	20851645	A	C	20851645	5	2	67	1	0	0	0	0	0	0	1	0	15854	173	6	5	4134	5	TEP1	14	20851645	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	38439	20851645	86497895	886	4248										
CHD8	0	genome.wustl.edu	37	chr14	21897328	21897328	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgcagctggatagttactAccttggcaggctgcccttgg	12	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	21897328	21897328	A	C	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.1010	p.V337G	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	267	1	0.37	206	25	10.73	-	-	-	C	21897328	A	C	21897328	3	2	67	1	0	0	0	0	1	0	0	0	3360	391	14	5	6879	5	CHD8	14	21897328	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1045683	21897328	85452212	887	4249										
ACIN1	0	genome.wustl.edu	37	chr14	23532180	23532180	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgctaatcttgccccggggTggggagggcacctgggcagt	17	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	23532180	23532180	T	G	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	silent	c.3015	p.P1005	0.614	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	152	0	0	140	23	14.02	-	-	-	G	23532180	T	G	23532180	2	3	67	1	0	0	0	0	0	0	0	1	142	1683	59	5		5	ACIN1	14	23532180	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1634852	23532180	83817360	888	4250										
IPO4	0	genome.wustl.edu	37	chr14	24655586	24655586	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgggatccaactggcctggTgggggctcagcagccacaat	14	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	24655586	24655586	T	G	SNP	IPO4	ENST00000354464	human	ensembl	69_37n	-1	known	silent	c.912	p.P304	0.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497	211	2	0.93	175	36	16.9	-	-	-	G	24655586	T	G	24655586	2	3	67	1	0	0	0	0	0	0	0	1	7849	1683	59	5		5	IPO4	14	24655586	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1123406	24655586	82693954	889	4251										
RABGGTA	0	genome.wustl.edu	37	chr14	24736012	24736012	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgcagggcagccagtgcaggTggcagggttcggaggcgatt	19	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	24736012	24736012	T	G	SNP	RABGGTA	ENST00000560521	human	ensembl	69_37n	-1	putative	missense	c.344	p.H115P	0.991	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RABGGTA	HGNC	ENSG00000100949	172	1	0.57	115	24	17.02	-	-	-	G	24736012	T	G	24736012	3	3	67	1	0	0	0	0	1	0	0	0	13050	1683	59	5	278	5	RABGGTA	14	24736012	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	80426	24736012	82613528	890	4252										
ADCY4	0	genome.wustl.edu	37	chr14	24787704	24787704	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagctgccctttgcctttcAccttgatgacaccccggctg	9	15	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	24787704	24787704	A	C	SNP	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	missense	c.3152	p.V1051G	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	187	1	0.53	202	25	11.01	-	-	-	C	24787704	A	C	24787704	3	2	67	1	0	0	0	0	1	0	0	0	296	159	6	5	85	5	ADCY4	14	24787704	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	51692	24787704	82561836	891	4253										
RIPK3	0	genome.wustl.edu	37	chr14	24808645	24808645	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccagattgcggctggggTcaaccggggtcactcacgag	16	11	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	24808645	24808645	T	G	SNP	RIPK3	ENST00000554338	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK3	HGNC	ENSG00000129465	65	0	0	57	17	22.97	-	-	-	G	24808645	T	G	24808645	1	3	67	0	1	0	0	0	0	0	0	0	13468	1682	58	5		5	RIPK3	14	24808645	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20941	24808645	82540895	892	4254										
NFATC4	0	genome.wustl.edu	37	chr14	24836313	24836313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcctcgccagtatctcccAccgagtcacgaatctcccat	6	18	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	24836313	24836313	A	C	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	missense	c.53	p.H18P	0.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	190	1	0.52	245	29	10.58	-	-	-	C	24836313	A	C	24836313	3	2	67	1	0	0	0	0	1	0	0	0	10437	159	6	5	55	5	NFATC4	14	24836313	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	27668	24836313	82513227	893	4255										
NUBPL	0	genome.wustl.edu	37	chr14	32030678	32030678	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcgtctgctgctttttggTggggtgtcgctccgggctgg	17	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	32030678	32030678	T	G	SNP	NUBPL	ENST00000281081	human	ensembl	69_37n	1	known	silent	c.33	p.G11	0.002	NULL	pfam_ATPase-like_ParA/MinD,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_ATPase_MipZ/NubP2/Cfd1	-	no_errors	NUBPL	HGNC	ENSG00000151413	68	0	0	54	13	19.4	-	-	-	G	32030678	T	G	32030678	2	3	67	1	0	0	0	0	0	0	0	1	10790	1683	59	5		5	NUBPL	14	32030678	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7194365	32030678	75318862	894	4256										
NID2	0	genome.wustl.edu	37	chr14	52505564	52505564	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacgttcagctgctgggtggTggggaaggacgggtgtctgg	20	7	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	52505564	52505564	T	G	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.2158	p.T720P	0.000	superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	274	1	0.36	238	36	13	-	-	-	G	52505564	T	G	52505564	3	3	67	1	0	0	0	0	1	0	0	0	10487	1696	59	5	2025	5	NID2	14	52505564	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	20474886	52505564	54843976	895	4257										
C14orf101	0	genome.wustl.edu	37	chr14	57075891	57075891	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtttgctgccctatgtccAccttcccatctcatcttacc	5	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	57075891	57075891	A	C	SNP	C14orf101	ENST00000261556	human	ensembl	69_37n	1	known	missense	c.704	p.H235P	1.000	NULL	pfam_DUF2723	-	no_errors	C14orf101	HGNC	ENSG00000070269	172	0	0	229	34	12.88	-	-	-	C	57075891	A	C	57075891	3	2	67	1	0	0	0	0	1	0	0	0	1746	159	6	5	726	5	C14orf101	14	57075891	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4570327	57075891	50273649	896	4258										
C14orf37	0	genome.wustl.edu	37	chr14	58605064	58605064	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgagacatctccgttctcAcctgagtctcttcattgtct	6	13	6	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	58605064	58605064	A	C	SNP	C14orf37	ENST00000557175	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.074	-	-	-	no_errors	C14orf37	HGNC	ENSG00000139971	116	1	0.85	128	16	11.11	-	-	-	C	58605064	A	C	58605064	5	2	67	1	0	0	0	0	0	0	1	0	1783	159	6	5	1339	5	C14orf37	14	58605064	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1529173	58605064	48744476	897	4259										
PLEKHH1	0	genome.wustl.edu	37	chr14	68042657	68042657	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttgctttcctcccactgcAccctggtgatccaccccaca	7	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	68042657	68042657	A	C	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	missense	c.2287	p.T763P	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	100	0	0	50	10	16.67	-	-	-	C	68042657	A	C	68042657	3	2	67	1	0	0	0	0	1	0	0	0	12150	159	6	5	2345	5	PLEKHH1	14	68042657	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9437593	68042657	39306883	898	4260										
ACTN1	0	genome.wustl.edu	37	chr14	69378871	69378871	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggaacaaagcagaaacccAccttccacggagatgtcctg	9	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	69378871	69378871	A	C	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	splice_site	c.427+2	e4+2	1.000	-	-	-	no_errors	ACTN1	HGNC	ENSG00000072110	180	0	0	122	22	15.17	-	-	-	C	69378871	A	C	69378871	5	2	67	1	0	0	0	0	0	0	1	0	204	173	6	5	2391	5	ACTN1	14	69378871	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1336214	69378871	37970669	899	4261										
KIAA0247	0	genome.wustl.edu	37	chr14	70125403	70125403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttccgctagtgatcctttgcAccctgcttggagacggactt	10	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	70125403	70125403	A	C	SNP	KIAA0247	ENST00000342745	human	ensembl	69_37n	1	known	missense	c.94	p.T32P	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	KIAA0247	HGNC	ENSG00000100647	251	1	0.39	192	30	13.39	-	-	-	C	70125403	A	C	70125403	3	2	67	1	0	0	0	0	1	0	0	0	8217	159	6	5	96	5	KIAA0247	14	70125403	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	746532	70125403	37224137	900	4262										
SLC8A3	0	genome.wustl.edu	37	chr14	70633415	70633415	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttcaaagtcctcaccgccAcccttggctgtcccttctac	5	18	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	70633415	70633415	A	C	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	silent	c.1725	p.G575	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	174	1	0.56	149	29	16.2	-	-	-	C	70633415	A	C	70633415	2	2	67	1	0	0	0	0	0	0	0	1	14797	146	6	5		5	SLC8A3	14	70633415	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	508012	70633415	36716125	901	4263										
MAP3K9	0	genome.wustl.edu	37	chr14	71206789	71206789	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgaaggcgaggaatgatggTggggcttgcaggaggactgg	20	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	71206789	71206789	T	G	SNP	MAP3K9	ENST00000555993	human	ensembl	69_37n	-1	known	missense	c.1660	p.T554P	1.000	pirsf_MAPKKK9/10/11,superfamily_Kinase-like_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	234	1	0.42	225	33	12.79	-	-	-	G	71206789	T	G	71206789	3	3	67	1	0	0	0	0	1	0	0	0	9328	1696	59	5	1724	5	MAP3K9	14	71206789	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	573374	71206789	36142751	902	4264										
ACOT1	0	genome.wustl.edu	37	chr14	74008280	74008280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggctagtctgctggctgggAagggttttgctgtgatggct	18	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	74008280	74008280	A	G	SNP	ACOT1	ENST00000311148	human	ensembl	69_37n	1	known	missense	c.541	p.K181E	0.001	pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT1	HGNC	ENSG00000184227	238	2	0.83	223	34	13.18	-	-	-	G	74008280	A	G	74008280	3	3	67	1	0	0	0	0	1	0	0	0	148	247	9	5	547	5	ACOT1	14	74008280	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2801491	74008280	33341260	903	4265										
ACOT2	0	genome.wustl.edu	37	chr14	74040175	74040175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggctagtctgctggctgggAagggttttgctgtgatggct	18	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	74040175	74040175	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	missense	c.727	p.K243E	0.223	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	466	1	0.21	413	63	13.24	-	-	-	G	74040175	A	G	74040175	3	3	67	1	0	0	0	0	1	0	0	0	152	247	9	5	733	5	ACOT2	14	74040175	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	31895	74040175	33309365	904	4266										
LTBP2	0	genome.wustl.edu	37	chr14	75019649	75019649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccgccctggctgtacagggTggtggtgtcgcccctctcac	14	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	75019649	75019649	T	G	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.1138	p.T380P	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	103	1	0.94	53	18	25	-	-	-	G	75019649	T	G	75019649	3	3	67	1	0	0	0	0	1	0	0	0	9140	1696	59	5	4455	5	LTBP2	14	75019649	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	979474	75019649	32329891	905	4267										
YLPM1	0	genome.wustl.edu	37	chr14	75279388	75279388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccagctccttcactgagccAccagcctcctccagctccac	6	21	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	75279388	75279388	A	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.5405	p.H1802P	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	137	1	0.72	68	14	17.07	-	-	-	C	75279388	A	C	75279388	3	2	67	1	0	0	0	0	1	0	0	0	17583	159	6	5	5447	5	YLPM1	14	75279388	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	259739	75279388	32070152	906	4268										
FLVCR2	0	genome.wustl.edu	37	chr14	76045476	76045476	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccccagcagttcggcccAccccagtgccttagcccaac	7	21	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	76045476	76045476	A	C	SNP	FLVCR2	ENST00000238667	human	ensembl	69_37n	1	known	missense	c.161	p.H54P	0.016	superfamily_Trimer_LpxA-like	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Trimer_LpxA-like,pfscan_MFS_dom	-	no_errors	FLVCR2	HGNC	ENSG00000119686	135	1	0.73	189	24	11.21	-	-	-	C	76045476	A	C	76045476	3	2	67	1	0	0	0	0	1	0	0	0	5992	159	6	5	163	5	FLVCR2	14	76045476	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	766088	76045476	31304064	907	4269										
FLVCR2	0	genome.wustl.edu	37	chr14	76112854	76112854	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcagggaacacgaacaccccAccttttccttcagcacagct	6	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	76112854	76112854	A	C	SNP	FLVCR2	ENST00000554496	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FLVCR2	HGNC	ENSG00000119686	144	1	0.68	79	29	26.61	-	-	-	C	76112854	A	C	76112854	1	2	67	0	1	0	0	0	0	0	0	0	5992	174	6	5		5	FLVCR2	14	76112854	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	67378	76112854	31236686	908	4270										
TTLL5	0	genome.wustl.edu	37	chr14	76349195	76349195	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccctggttcccaaacccccAcccaaccacgaacaagtgct	5	19	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	76349195	76349195	A	C	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	silent	c.3690	p.P1230	0.451	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	273	2	0.73	225	28	11.02	-	-	-	C	76349195	A	C	76349195	2	2	67	1	0	0	0	0	0	0	0	1	16827	146	6	5		5	TTLL5	14	76349195	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	236341	76349195	31000345	909	4271										
TMED8	0	genome.wustl.edu	37	chr14	77818024	77818024	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaagtggttacctgtggggTgaggagcagggttctggatc	17	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	77818024	77818024	T	G	SNP	TMED8	ENST00000216468	human	ensembl	69_37n	-1	known	silent	c.189	p.S63	0.566	NULL	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580	345	1	0.29	231	32	12.17	-	-	-	G	77818024	T	G	77818024	2	3	67	1	0	0	0	0	0	0	0	1	16106	1683	59	5		5	TMED8	14	77818024	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1468829	77818024	29531516	910	4272										
TMED8	0	genome.wustl.edu	37	chr14	77818047	77818047	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagcagggttctggatcggTggcagaagccaataaagagg	17	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	77818047	77818047	T	G	SNP	TMED8	ENST00000216468	human	ensembl	69_37n	-1	known	missense	c.166	p.T56P	0.992	NULL	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580	347	1	0.29	223	32	12.5	-	-	-	G	77818047	T	G	77818047	3	3	67	1	0	0	0	0	1	0	0	0	16106	1696	59	5	830	5	TMED8	14	77818047	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	23	77818047	29531493	911	4273										
STON2	0	genome.wustl.edu	37	chr14	81862359	81862359	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgctcagggctcccaggTggggaagctgcttcagagat	16	10	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	81862359	81862359	T	G	SNP	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	silent	c.252	p.P84	0.222	pfam_Stonin2_N,pirsf_Stonin	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	102	0	0	106	20	15.87	-	-	-	G	81862359	T	G	81862359	2	3	67	1	0	0	0	0	0	0	0	1	15409	1683	59	5		5	STON2	14	81862359	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4044312	81862359	25487181	912	4274										
ZC3H14	0	genome.wustl.edu	37	chr14	89073699	89073699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcctaccatcaccccatctcAccctgcaagtgagtaccatc	5	18	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	89073699	89073699	A	C	SNP	ZC3H14	ENST00000556000	human	ensembl	69_37n	1	known	missense	c.1607	p.H536P	0.991	NULL	smart_Znf_CCCH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZC3H14	HGNC	ENSG00000100722	112	1	0.87	89	24	21.05	-	-	-	C	89073699	A	C	89073699	3	2	67	1	0	0	0	0	1	0	0	0	17662	146	6	5	2299	5	ZC3H14	14	89073699	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7211340	89073699	18275841	913	4275										
CCDC88C	0	genome.wustl.edu	37	chr14	91749690	91749690	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacctttggtgcggcctgggTgccgggcgatgggggtggag	21	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	91749690	91749690	T	G	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.4613	p.H1538P	0.988	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	147	0	0	120	20	14.29	-	-	-	G	91749690	T	G	91749690	3	3	67	1	0	0	0	0	1	0	0	0	2892	1696	59	5	1493	5	CCDC88C	14	91749690	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2675991	91749690	15599850	914	4276										
EVL	0	genome.wustl.edu	37	chr14	100531785	100531785	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctctgatcaacataggctggTgggagtacaggactcgcctc	12	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	100531785	100531785	T	G	SNP	EVL	ENST00000553771	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVL	HGNC	ENSG00000196405	91	0	0	48	15	23.44	-	-	-	G	100531785	T	G	100531785	1	3	67	0	1	0	0	0	0	0	0	0	5328	1711	59	5		5	EVL	14	100531785	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8782095	100531785	6817755	915	4277										
DLK1	0	genome.wustl.edu	37	chr14	101195443	101195443	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacctcagctctgcgtccttAcctgcctgccctagccccta	6	20	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	101195443	101195443	A	C	SNP	DLK1	ENST00000556051	human	ensembl	69_37n	1	putative	missense	c.302	p.Y101S	0.001	NULL	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559	91	0	0	40	16	28.07	-	-	-	C	101195443	A	C	101195443	3	2	67	1	0	0	0	0	1	0	0	0	4600	406	14	5		5	DLK1	14	101195443	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	663658	101195443	6154097	916	4278										
DYNC1H1	0	genome.wustl.edu	37	chr14	102476251	102476251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggacatggccatcttcatcAccatgaaccctggctacgcg	9	15	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	102476251	102476251	A	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.6049	p.T2017P	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	93	0	0	54	11	16.42	-	-	-	C	102476251	A	C	102476251	3	2	67	1	0	0	0	0	1	0	0	0	4876	159	6	5	6167	5	DYNC1H1	14	102476251	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1280808	102476251	4873289	917	4279										
DYNC1H1	0	genome.wustl.edu	37	chr14	102483426	102483426	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgtgtcttccctccaaaggTggtgggtctcaacttctcca	9	12	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	102483426	102483426	T	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.7850	p.V2617G	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	178	1	0.55	117	27	18.75	-	-	-	G	102483426	T	G	102483426	3	3	67	1	0	0	0	0	1	0	0	0	4876	1710	59	5	8004	5	DYNC1H1	14	102483426	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7175	102483426	4866114	918	4280										
AHNAK2	0	genome.wustl.edu	37	chr14	105410029	105410029	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catcaggggctgtcacttccAccttggggtcttttaggtcc	11	12	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	105410029	105410029	A	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.11759	p.V3920G	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	232	0	0	271	37	11.97	-	-	-	C	105410029	A	C	105410029	3	2	67	1	0	0	0	0	1	0	0	0	415	159	6	5	5632	5	AHNAK2	14	105410029	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2926603	105410029	1939511	919	4281										
AHNAK2	0	genome.wustl.edu	37	chr14	105410785	105410785	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagactcacatcggcttccAccttgggtgcagacacatcc	10	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	14	105410785	105410785	A	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.11003	p.V3668G	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	142	1	0.69	124	20	13.79	-	-	-	C	105410785	A	C	105410785	3	2	67	1	0	0	0	0	1	0	0	0	415	159	6	5	6388	5	AHNAK2	14	105410785	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	756	105410785	1938755	920	4282										
GABRA5	0	genome.wustl.edu	37	chr15	27182428	27182428	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctccagactgaaccagtaccAcctgatggggcagacggtgg	13	12	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	27182428	27182428	A	C	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	missense	c.677	p.H226P	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	83	0	0	78	17	17.89	-	-	-	C	27182428	A	C	27182428	3	2	67	1	0	0	0	0	1	0	0	0	6213	159	6	5	699	5	GABRA5	15	27182428	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		27182428	75348964	921	4283										
HERC2	0	genome.wustl.edu	37	chr15	28519482	28519482	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtcgctctctccaccaccTccagccacacagaggacacg	8	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	28519482	28519482	T	C	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.755	p.E252G	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	101	0	0	48	11	18.64	-	-	-	C	28519482	T	C	28519482	3	2	67	1	0	0	0	0	1	0	0	0	7109	1551	54	5	14097	5	HERC2	15	28519482	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1337054	28519482	74011910	922	4284										
TMCO5A	0	genome.wustl.edu	37	chr15	38229057	38229057	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgttgtccaggctggaaagTgagatcattcagacgcgggg	16	7	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	38229057	38229057	T	G	SNP	TMCO5A	ENST00000319669	human	ensembl	69_37n	1	known	missense	c.150	p.S50R	0.927	NULL	NULL	-	no_errors	TMCO5A	HGNC	ENSG00000166069	219	1	0.45	134	16	10.67	-	-	-	G	38229057	T	G	38229057	3	3	67	1	0	0	0	0	1	0	0	0	16094	1693	59	5	156	5	TMCO5A	15	38229057	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9709575	38229057	64302335	923	4285										
TMCO5A	0	genome.wustl.edu	37	chr15	38229083	38229083	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cattcagacgcggggcctggTggaagatgaagagtgggaga	18	6	1	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	38229083	38229083	T	G	SNP	TMCO5A	ENST00000319669	human	ensembl	69_37n	1	known	missense	c.176	p.V59G	0.142	NULL	NULL	-	no_errors	TMCO5A	HGNC	ENSG00000166069	258	2	0.77	143	25	14.53	-	-	-	G	38229083	T	G	38229083	3	3	67	1	0	0	0	0	1	0	0	0	16094	1696	59	5	182	5	TMCO5A	15	38229083	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	26	38229083	64302309	924	4286										
FAM98B	0	genome.wustl.edu	37	chr15	38776776	38776776	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtggaagagggggctatggTggaagaggctatggagatcc	20	4	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	38776776	38776776	T	G	SNP	FAM98B	ENST00000397609	human	ensembl	69_37n	1	known	silent	c.1218	p.G406	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98B	HGNC	ENSG00000171262	121	0	0	63	17	21.25	-	-	-	G	38776776	T	G	38776776	2	3	67	1	0	0	0	0	0	0	0	1	5703	1683	59	5		5	FAM98B	15	38776776	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	547693	38776776	63754616	925	4287										
PAK6	0	genome.wustl.edu	37	chr15	40564626	40564626	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccagcgggatccccccgcAcctggcacgcccagatcagc	10	21	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	40564626	40564626	A	C	SNP	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	missense	c.1060	p.T354P	0.994	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	62	0	0	43	8	15.69	-	-	-	C	40564626	A	C	40564626	3	2	67	1	0	0	0	0	1	0	0	0	11477	159	6	5	1070	5	PAK6	15	40564626	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1787850	40564626	61966766	926	4288										
PLCB2	0	genome.wustl.edu	37	chr15	40596200	40596200	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcacacaagggttttctcAccttactttgatacgtccag	8	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	40596200	40596200	A	C	SNP	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	splice_site	c.162+2	e2+2	1.000	-	-	-	no_errors	PLCB2	HGNC	ENSG00000137841	142	0	0	141	20	12.35	-	-	-	C	40596200	A	C	40596200	5	2	67	1	0	0	0	0	0	0	1	0	12102	173	6	5	3517	5	PLCB2	15	40596200	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	31574	40596200	61935192	927	4289										
C15orf52	0	genome.wustl.edu	37	chr15	40631094	40631094	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgcccagttcctgctaaccAcccgcttttcctgcagaaca	6	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	40631094	40631094	A	C	SNP	C15orf52	ENST00000559313	human	ensembl	69_37n	-1	known	missense	c.374	p.V125G	1.000	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549	205	1	0.48	214	34	13.6	-	-	-	C	40631094	A	C	40631094	3	2	67	1	0	0	0	0	1	0	0	0	1812	159	6	5	1262	5	C15orf52	15	40631094	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	34894	40631094	61900298	928	4290										
BAHD1	0	genome.wustl.edu	37	chr15	40754251	40754251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcccccatcttcagacacccAcctcggagccccagacagta	6	19	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	40754251	40754251	A	C	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	missense	c.1573	p.T525P	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	66	0	0	49	9	15.52	-	-	-	C	40754251	A	C	40754251	3	2	67	1	0	0	0	0	1	0	0	0	1301	159	6	5	1579	5	BAHD1	15	40754251	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	123157	40754251	61777141	929	4291										
C15orf62	0	genome.wustl.edu	37	chr15	41063018	41063018	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacagcagcctactctgccAccctgccatcggcgctctct	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	41063018	41063018	A	C	SNP	C15orf62	ENST00000344320	human	ensembl	69_37n	1	known	missense	c.325	p.T109P	0.990	NULL	NULL	-	no_errors	C15orf62	HGNC	ENSG00000188277	103	1	0.95	67	18	21.18	-	-	-	C	41063018	A	C	41063018	3	2	67	1	0	0	0	0	1	0	0	0	1821	159	6	5	327	5	C15orf62	15	41063018	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	308767	41063018	61468374	930	4292										
SPINT1	0	genome.wustl.edu	37	chr15	41145364	41145364	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcaggcatagacttgaaggTacaaccccaggaacccctgg	12	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	41145364	41145364	T	G	SNP	SPINT1	ENST00000344051	human	ensembl	69_37n	1	known	missense	c.518	p.V173G	0.996	NULL	pfam_Prot_inh_Kunz-m,pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_Prot_inh_Kunz-m,superfamily_LDrepeatLR_classA_rpt,superfamily_PKD_dom,smart_MANSC_N,smart_Prot_inh_Kunz-m,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	SPINT1	HGNC	ENSG00000166145	225	0	0	127	17	11.81	-	-	-	G	41145364	T	G	41145364	3	3	67	1	0	0	0	0	1	0	0	0	15159	1638	57	5	524	5	SPINT1	15	41145364	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	82346	41145364	61386028	931	4293										
TTBK2	0	genome.wustl.edu	37	chr15	43038227	43038227	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccgtccagccctagatggTgaggaactagacgtgcgagg	16	10	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	43038227	43038227	T	G	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	silent	c.3501	p.S1167	0.978	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	264	2	0.75	255	29	10.1	-	-	-	G	43038227	T	G	43038227	2	3	67	1	0	0	0	0	0	0	0	1	16774	1683	59	5		5	TTBK2	15	43038227	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1892863	43038227	59493165	932	4294										
TGM5	0	genome.wustl.edu	37	chr15	43531130	43531130	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaagcttctgctccttcccTccctggacgagccaggacat	9	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	43531130	43531130	T	C	SNP	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	silent	c.1230	p.G410	0.080	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	167	1	0.59	235	40	14.55	-	-	-	C	43531130	T	C	43531130	2	2	67	1	0	0	0	0	0	0	0	1	15928	1538	54	5		5	TGM5	15	43531130	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	492903	43531130	59000262	933	4295										
TUBGCP4	0	genome.wustl.edu	37	chr15	43668321	43668321	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggacttccctttcctccAccccagtgagaccagtgtcc	8	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	43668321	43668321	A	C	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.104	p.H35P	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	134	1	0.74	81	16	16.49	-	-	-	C	43668321	A	C	43668321	3	2	67	1	0	0	0	0	1	0	0	0	16865	159	6	5	110	5	TUBGCP4	15	43668321	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	137191	43668321	58863071	934	4296										
CASC4	0	genome.wustl.edu	37	chr15	44581295	44581295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgctggtggtgctgctggTggtgatcgtcgtcctcgcct	16	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	44581295	44581295	T	G	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.68	p.V23G	1.000	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	40	0	0	17	7	28	-	-	-	G	44581295	T	G	44581295	3	3	67	1	0	0	0	0	1	0	0	0	2687	1696	59	5	70	5	CASC4	15	44581295	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	912974	44581295	57950097	935	4297										
DUOX1	0	genome.wustl.edu	37	chr15	45448102	45448102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcttctggctgacccaccAcctctacatcctgctctatg	8	16	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	45448102	45448102	A	C	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3677	p.H1226P	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	217	1	0.46	189	32	14.35	-	-	-	C	45448102	A	C	45448102	3	2	67	1	0	0	0	0	1	0	0	0	4835	159	6	5	3783	5	DUOX1	15	45448102	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	866807	45448102	57083290	936	4298										
DUOX1	0	genome.wustl.edu	37	chr15	45454504	45454504	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggagggggcattggggtcAccccttttgcctccatcctc	13	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	45454504	45454504	A	C	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.4177	p.T1393P	1.000	pfam_Fe_red_NAD-bd_6	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	151	0	0	155	28	15.14	-	-	-	C	45454504	A	C	45454504	3	2	67	1	0	0	0	0	1	0	0	0	4835	159	6	5	4295	5	DUOX1	15	45454504	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6402	45454504	57076888	937	4299										
SLC28A2	0	genome.wustl.edu	37	chr15	45564454	45564454	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatatacctgattgccttggTggggaaaagctgaagttatt	12	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	45564454	45564454	T	G	SNP	SLC28A2	ENST00000560767	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC28A2	HGNC	ENSG00000137860	50	0	0	33	14	29.79	-	-	-	G	45564454	T	G	45564454	1	3	67	0	1	0	0	0	0	0	0	0	14621	1711	59	5		5	SLC28A2	15	45564454	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	109950	45564454	56966938	938	4300										
GLDN	0	genome.wustl.edu	37	chr15	51687141	51687141	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcagaagggagaaaagggTgacaaaggagatgtgtccaa	17	4	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	51687141	51687141	T	G	SNP	GLDN	ENST00000335449	human	ensembl	69_37n	1	known	silent	c.651	p.G217	0.962	pfam_Collagen	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417	210	1	0.47	111	20	15.27	-	-	-	G	51687141	T	G	51687141	2	3	67	1	0	0	0	0	0	0	0	1	6486	1683	59	5		5	GLDN	15	51687141	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6122687	51687141	50844251	939	4301										
TLN2	0	genome.wustl.edu	37	chr15	62994308	62994308	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccctcatggatgatgaggTgggcagcggggaggacttgc	18	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	62994308	62994308	T	G	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.1814	p.V605G	1.000	pfam_Talin_cent,superfamily_Talin_cent	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	129	0	0	62	16	20.51	-	-	-	G	62994308	T	G	62994308	3	3	67	1	0	0	0	0	1	0	0	0	16043	1696	59	5	1872	5	TLN2	15	62994308	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	11307167	62994308	39537084	940	4302										
MEGF11	0	genome.wustl.edu	37	chr15	66206100	66206100	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggagtagtcggtgctggtCatcctcatggcaggtgtgta	16	7	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	66206100	66206100	C	T	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.2685	p.M895I	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	112	0	0	60	18	23.08	-	-	-	T	66206100	C	T	66206100	3	4	67	1	0	0	0	0	1	0	0	0	9532	826	29	2	465	2	MEGF11	15	66206100	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	3211792	66206100	36325292	941	4303										
CLN6	0	genome.wustl.edu	37	chr15	68504065	68504065	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttctcacggacagacaggTggtgctggtagccactgaag	15	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	68504065	68504065	T	G	SNP	CLN6	ENST00000249806	human	ensembl	69_37n	-1	known	missense	c.434	p.H145P	1.000	NULL	NULL	-	no_errors	CLN6	HGNC	ENSG00000128973	106	0	0	64	14	17.95	-	-	-	G	68504065	T	G	68504065	3	3	67	1	0	0	0	0	1	0	0	0	3575	1696	59	5	517	5	CLN6	15	68504065	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2297965	68504065	34027327	942	4304										
NEO1	0	genome.wustl.edu	37	chr15	73581572	73581572	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgccctttgactcccagccAccccagcgtaagtagaagca	8	15	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	73581572	73581572	A	C	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	silent	c.3735	p.P1245	0.869	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	174	1	0.57	104	14	11.86	-	-	-	C	73581572	A	C	73581572	2	2	67	1	0	0	0	0	0	0	0	1	10408	146	6	5		5	NEO1	15	73581572	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5077507	73581572	28949820	943	4305										
HCN4	0	genome.wustl.edu	37	chr15	73617775	73617775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaaggacatgtactgctccAcctgcttgtactgaggccgg	12	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	73617775	73617775	A	C	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.1601	p.V534G	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	118	1	0.83	68	16	18.18	-	-	-	C	73617775	A	C	73617775	3	2	67	1	0	0	0	0	1	0	0	0	7050	159	6	5	2026	5	HCN4	15	73617775	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	36203	73617775	28913617	944	4306										
STRA6	0	genome.wustl.edu	37	chr15	74477358	74477358	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgcatcaggaccaggaaggTgagtaagcaggacaagacca	14	9	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	74477358	74477358	T	G	SNP	STRA6	ENST00000563965	human	ensembl	69_37n	-1	known	missense	c.1246	p.T416P	1.000	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868	251	2	0.78	148	25	14.37	-	-	-	G	74477358	T	G	74477358	3	3	67	1	0	0	0	0	1	0	0	0	15413	1696	59	5	902	5	STRA6	15	74477358	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	859583	74477358	28054034	945	4307										
LMAN1L	0	genome.wustl.edu	37	chr15	75116718	75116718	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagccaaggccccccgcccAcctggccagcccccaagggc	11	22	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	75116718	75116718	A	C	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	silent	c.1350	p.P450	0.000	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	60	0	0	52	16	23.53	-	-	-	C	75116718	A	C	75116718	2	2	67	1	0	0	0	0	0	0	0	1	8893	146	6	5		5	LMAN1L	15	75116718	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	639360	75116718	27414674	946	4308										
CPLX3	0	genome.wustl.edu	37	chr15	75122506	75122506	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccagatccagatggcaggTggagacgtggagctgccccg	16	11	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	75122506	75122506	T	G	SNP	CPLX3	ENST00000395018	human	ensembl	69_37n	1	known	silent	c.288	p.G96	0.899	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX3	HGNC	ENSG00000213578	132	1	0.74	92	16	14.55	-	-	-	G	75122506	T	G	75122506	2	3	67	1	0	0	0	0	0	0	0	1	3836	1683	59	5		5	CPLX3	15	75122506	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5788	75122506	27408886	947	4309										
SCAMP5	0	genome.wustl.edu	37	chr15	75304189	75304189	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctggtaacatcatggcaggTaaggagaggggcaggctgtg	18	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	75304189	75304189	T	G	SNP	SCAMP5	ENST00000562212	human	ensembl	69_37n	1	known	splice_site	c.7+2	e1+2	1.000	-	-	-	no_errors	SCAMP5	HGNC	ENSG00000198794	360	3	0.82	285	69	19.44	-	-	-	G	75304189	T	G	75304189	5	3	67	1	0	0	0	0	0	0	1	0	13961	1652	57	5	11	5	SCAMP5	15	75304189	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	181683	75304189	27227203	948	4310										
SIN3A	0	genome.wustl.edu	37	chr15	75705122	75705122	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accttgctgactttggcaggTgggggctgaggagctggctg	18	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	75705122	75705122	T	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	silent	c.738	p.P246	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	290	0	0	268	43	13.69	-	-	-	G	75705122	T	G	75705122	2	3	67	1	0	0	0	0	0	0	0	1	14414	1683	59	5		5	SIN3A	15	75705122	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	400933	75705122	26826270	949	4311										
SIN3A	0	genome.wustl.edu	37	chr15	75705149	75705149	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaggagctggctgggcaggAgctggggctgactgggctga	21	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	75705149	75705149	A	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	silent	c.711	p.A237	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	352	2	0.56	318	38	10.64	-	-	-	G	75705149	A	G	75705149	2	3	67	1	0	0	0	0	0	0	0	1	14414	291	11	5		5	SIN3A	15	75705149	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	27	75705149	26826243	950	4312										
PSTPIP1	0	genome.wustl.edu	37	chr15	77310855	77310855	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagatcgcacggaaggcaggTggccagacggagatcaagta	15	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	77310855	77310855	T	G	SNP	PSTPIP1	ENST00000559785	human	ensembl	69_37n	1	known	silent	c.390	p.G130	0.229	pfam_FCH,superfamily_Prismane-like,smart_FCH,pfscan_FCH	pfam_FCH,superfamily_Prismane-like,smart_FCH,pfscan_FCH	-	no_errors	PSTPIP1	HGNC	ENSG00000140368	111	0	0	95	12	11.21	-	-	-	G	77310855	T	G	77310855	2	3	67	1	0	0	0	0	0	0	0	1	12801	1683	59	5		5	PSTPIP1	15	77310855	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1605706	77310855	25220537	951	4313										
CHRNB4	0	genome.wustl.edu	37	chr15	78921509	78921509	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagttcccatagaagttggAggggctggtggaggtggcgg	21	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	78921509	78921509	A	G	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.1138	p.S380P	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	169	1	0.59	100	22	17.89	-	-	-	G	78921509	A	G	78921509	3	3	67	1	0	0	0	0	1	0	0	0	3422	304	11	5	366	5	CHRNB4	15	78921509	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1610654	78921509	23609883	952	4314										
KIAA1199	0	genome.wustl.edu	37	chr15	81180038	81180038	+	Frame_Shift_Del	DEL	C	C	-													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtttttctttttttcagacaCccttggagttttctaactgt							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	81180038	81180038	C	-	DEL	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	frame_shift_del	c.801	p.P268fs	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	98	0	0	75	51	39.23	-	-	-	-	81180038	C	-	81180038	7	5	67	1	0	1	0	1	0	0	0	0	8265	506	18	0	823	0	KIAA1199	15	81180038	Frame_Shift_Del	DEL	C	TCGA-A2-A0T5-01A-21D-A099-09	2258529	81180038	21351354	953	4315										
WHAMM	0	genome.wustl.edu	37	chr15	83502038	83502038	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagagctcctctccggaaggTggaagtgccggcggtgcgcc	16	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	83502038	83502038	T	G	SNP	WHAMM	ENST00000286760	human	ensembl	69_37n	1	known	missense	c.2180	p.V727G	0.000	NULL	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232	100	0	0	77	15	16.3	-	-	-	G	83502038	T	G	83502038	3	3	67	1	0	0	0	0	1	0	0	0	17458	1696	59	5	2218	5	WHAMM	15	83502038	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2322000	83502038	19029354	954	4316										
TM6SF1	0	genome.wustl.edu	37	chr15	83781630	83781630	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcctcgtcaaaagaaaaccAccccgggacccactgttcta	7	15	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	83781630	83781630	A	C	SNP	TM6SF1	ENST00000379386	human	ensembl	69_37n	1	known	silent	c.174	p.P58	0.478	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF1	HGNC	ENSG00000136404	170	1	0.58	192	42	17.8	-	-	-	C	83781630	A	C	83781630	2	2	67	1	0	0	0	0	0	0	0	1	16067	146	6	5		5	TM6SF1	15	83781630	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	279592	83781630	18749762	955	4317										
ZNF592	0	genome.wustl.edu	37	chr15	85342434	85342434	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacagtaaagaagttctacAcctgcgggtgagtccctggg	12	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	85342434	85342434	A	C	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.3130	p.T1044P	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	235	1	0.42	167	22	11.64	-	-	-	C	85342434	A	C	85342434	3	2	67	1	0	0	0	0	1	0	0	0	18118	159	6	5	3152	5	ZNF592	15	85342434	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1560804	85342434	17188958	956	4318										
ALPK3	0	genome.wustl.edu	37	chr15	85399891	85399891	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcagataggaagacgcaggTggatgctgggacacaagaaa	15	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	85399891	85399891	T	G	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.2528	p.V843G	0.008	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	263	2	0.74	143	25	14.88	-	-	-	G	85399891	T	G	85399891	3	3	67	1	0	0	0	0	1	0	0	0	546	1696	59	5	2550	5	ALPK3	15	85399891	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	57457	85399891	17131501	957	4319										
AKAP13	0	genome.wustl.edu	37	chr15	86286963	86286963	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagccaggcccctgcgtccAcctctgcctctacccgcctg	9	20	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	86286963	86286963	A	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.8311	p.T2771P	0.084	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	115	0	0	61	16	20.25	-	-	-	C	86286963	A	C	86286963	3	2	67	1	0	0	0	0	1	0	0	0	449	159	6	5	8507	5	AKAP13	15	86286963	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	887072	86286963	16244429	958	4320										
ACAN	0	genome.wustl.edu	37	chr15	89388737	89388737	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctttgcccctcccctaggTgaagactttgtggacatccc	9	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	89388737	89388737	T	G	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	silent	c.1053	p.G351	1.000	superfamily_C-type_lectin_fold	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	46	0	0	18	5	20.83	-	-	-	G	89388737	T	G	89388737	2	3	67	1	0	0	0	0	0	0	0	1	117	1710	59	5		5	ACAN	15	89388737	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3101774	89388737	13142655	959	4321										
POLG	0	genome.wustl.edu	37	chr15	89870220	89870220	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtggctggttccttcttcAccttcttagctttcttctgc	7	13	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	89870220	89870220	A	C	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.1508	p.V503G	0.986	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	97	0	0	153	25	13.74	-	-	-	C	89870220	A	C	89870220	3	2	67	1	0	0	0	0	1	0	0	0	12274	159	6	5	2275	5	POLG	15	89870220	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	481483	89870220	12661172	960	4322										
PLIN1	0	genome.wustl.edu	37	chr15	90210289	90210289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgtgaggtgcagcacccTccctgccatgcccagcacag	12	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	90210289	90210289	T	C	SNP	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	missense	c.1087	p.R363G	0.001	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	80	0	0	29	14	32.56	-	-	-	C	90210289	T	C	90210289	3	2	67	1	0	0	0	0	1	0	0	0	12163	1550	54	5	489	5	PLIN1	15	90210289	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	340069	90210289	12321103	961	4323										
ANPEP	0	genome.wustl.edu	37	chr15	90344805	90344805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttcatgatgtcccgcacggTggtggggagttggatggacc	17	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	90344805	90344805	T	G	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	missense	c.1603	p.T535P	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	186	1	0.52	143	23	13.77	-	-	-	G	90344805	T	G	90344805	3	3	67	1	0	0	0	0	1	0	0	0	709	1696	59	5	1344	5	ANPEP	15	90344805	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	134516	90344805	12186587	962	4324										
ANPEP	0	genome.wustl.edu	37	chr15	90348550	90348550	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccgcaggcagggcccactcAcctttgggaagcatgttgga	14	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	90348550	90348550	A	C	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	splice_site	c.757+2	e2+2	0.983	-	-	-	no_errors	ANPEP	HGNC	ENSG00000166825	185	0	0	149	18	10.59	-	-	-	C	90348550	A	C	90348550	5	2	67	1	0	0	0	0	0	0	1	0	709	173	6	5	2220	5	ANPEP	15	90348550	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3745	90348550	12182842	963	4325										
SV2B	0	genome.wustl.edu	37	chr15	91803619	91803619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaacatgagagctaaggggAccccagagaaagtgttcacg	12	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	91803619	91803619	A	C	SNP	SV2B	ENST00000330276	human	ensembl	69_37n	1	known	missense	c.988	p.T330P	0.086	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2B	HGNC	ENSG00000185518	267	2	0.74	162	29	15.03	-	-	-	C	91803619	A	C	91803619	3	2	67	1	0	0	0	0	1	0	0	0	15509	275	10	5	1006	5	SV2B	15	91803619	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1455069	91803619	10727773	964	4326										
SYNM	0	genome.wustl.edu	37	chr15	99671031	99671031	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagaagtgacagaggcaggTgattcagagggcgagcagag	18	5	1	6			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	99671031	99671031	T	G	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	silent	c.2463	p.G821	0.996	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	118	1	0.84	60	12	16.67	-	-	-	G	99671031	T	G	99671031	2	3	67	1	0	0	0	0	0	0	0	1	15547	1683	59	5		5	SYNM	15	99671031	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7867412	99671031	2860361	965	4327										
PCSK6	0	genome.wustl.edu	37	chr15	101933464	101933464	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgtaggtggtggccagggTggaggcacactcttccaggt	17	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	15	101933464	101933464	T	G	SNP	PCSK6	ENST00000348070	human	ensembl	69_37n	-1	known	missense	c.1159	p.T387P	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_PLAC,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel,pfscan_PLAC	-	no_errors	PCSK6	HGNC	ENSG00000140479	114	0	0	90	29	24.17	-	-	-	G	101933464	T	G	101933464	3	3	67	1	0	0	0	0	1	0	0	0	11677	1696	59	5	2286	5	PCSK6	15	101933464	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2262433	101933464	597928	966	4328										
POLR3K	0	genome.wustl.edu	37	chr16	103474	103474	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcgccggccttcgggtcccAccttgcgggtgatgttgtgc	15	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	103474	103474	A	C	SNP	POLR3K	ENST00000293860	human	ensembl	69_37n	-1	known	splice_site	c.111+2	e1+2	1.000	-	-	-	no_errors	POLR3K	HGNC	ENSG00000161980	56	0	0	68	17	19.77	-	-	-	C	103474	A	C	103474	5	2	67	1	0	0	0	0	0	0	1	0	12311	173	6	5	225	5	POLR3K	16	103474	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		103474	90251279	967	4329										
WDR90	0	genome.wustl.edu	37	chr16	701847	701847	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccggccgggccgccttggcAcccaggcccttcccggaggt	14	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	701847	701847	A	C	SNP	WDR90	ENST00000549091	human	ensembl	69_37n	1	novel	silent	c.861	p.A287	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	54	0	0	42	9	17.65	-	-	-	C	701847	A	C	701847	2	2	67	1	0	0	0	0	0	0	0	1	17434	146	6	5		5	WDR90	16	701847	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	598373	701847	89652906	968	4330										
NARFL	0	genome.wustl.edu	37	chr16	784099	784099	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaccaggagggaacaagggTggaggtgtgctggggaaggc	21	5	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	784099	784099	T	G	SNP	NARFL	ENST00000562862	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NARFL	HGNC	ENSG00000103245	29	0	0	18	7	26.92	-	-	-	G	784099	T	G	784099	1	3	67	0	1	0	0	0	0	0	0	0	10240	1711	59	5		5	NARFL	16	784099	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	82252	784099	89570654	969	4331										
TPSAB1	0	genome.wustl.edu	37	chr16	1291838	1291838	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacctgcagagcgcctcccAccgccatttcctctgaagca	7	19	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	1291838	1291838	A	C	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	1	known	silent	c.510	p.P170	0.021	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	20	0	0	7	6	46.15	-	-	-	C	1291838	A	C	1291838	2	2	67	1	0	0	0	0	0	0	0	1	16519	146	6	5		5	TPSAB1	16	1291838	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	507739	1291838	89062915	970	4332										
TPSAB1	0	genome.wustl.edu	37	chr16	1291906	1291906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catttgtgacgcaaaataccAccttggcgcctacacgggag	10	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	1291906	1291906	A	C	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	1	known	missense	c.578	p.H193P	0.973	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	12	0	0	7	5	38.46	-	-	-	C	1291906	A	C	1291906	3	2	67	1	0	0	0	0	1	0	0	0	16519	159	6	5	592	5	TPSAB1	16	1291906	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	68	1291906	89062847	971	4333										
BAIAP3	0	genome.wustl.edu	37	chr16	1390984	1390984	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgagtgaggaaggccaaggTgaggccgccactgcctgggc	18	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	1390984	1390984	T	G	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	splice_site	c.573+2	e6+2	1.000	-	-	-	no_errors	BAIAP3	HGNC	ENSG00000007516	54	0	0	35	11	23.91	-	-	-	G	1390984	T	G	1390984	5	3	67	1	0	0	0	0	0	0	1	0	1308	1710	59	5	597	5	BAIAP3	16	1390984	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	99078	1390984	88963769	972	4334										
CRAMP1L	0	genome.wustl.edu	37	chr16	1675984	1675984	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctctccaaggagctgaaggTggtggatcatcgtctggaaa	13	8	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	1675984	1675984	T	G	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	silent	c.357	p.G119	0.090	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	135	1	0.72	125	24	16.11	-	-	-	G	1675984	T	G	1675984	2	3	67	1	0	0	0	0	0	0	0	1	3876	1683	59	5		5	CRAMP1L	16	1675984	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	285000	1675984	88678769	973	4335										
TSC2	0	genome.wustl.edu	37	chr16	2127644	2127644	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaggcttgaataactctccAcccgtgaaagaattcaagga	8	10	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	2127644	2127644	A	C	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	silent	c.2883	p.P961	0.998	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	104	1	0.95	97	20	17.09	-	-	-	C	2127644	A	C	2127644	2	2	67	1	0	0	0	0	0	0	0	1	16702	146	6	5		5	TSC2	16	2127644	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	451660	2127644	88227109	974	4336										
CASKIN1	0	genome.wustl.edu	37	chr16	2231334	2231334	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgggtggcaggtggctggAgggcttctcagtggtgggcc	22	7	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	2231334	2231334	A	G	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	missense	c.2035	p.S679P	0.223	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	31	0	0	31	5	13.89	-	-	-	G	2231334	A	G	2231334	3	3	67	1	0	0	0	0	1	0	0	0	2691	304	11	5	2272	5	CASKIN1	16	2231334	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	103690	2231334	88123419	975	4337										
E4F1	0	genome.wustl.edu	37	chr16	2282221	2282221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgctgaggcggagctgggAgacggtgagatggccgaggc	21	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	2282221	2282221	A	G	SNP	E4F1	ENST00000562589	human	ensembl	69_37n	1	known	missense	c.544	p.R182G	0.141	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	E4F1	HGNC	ENSG00000167967	48	0	0	32	7	17.95	-	-	-	G	2282221	A	G	2282221	3	3	67	1	0	0	0	0	1	0	0	0	4909	291	11	5	479	5	E4F1	16	2282221	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	50887	2282221	88072532	976	4338										
CLDN6	0	genome.wustl.edu	37	chr16	3065928	3065928	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgttgccgatgaaagcggtcAccttccacatgggcagggca	13	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	3065928	3065928	A	C	SNP	CLDN6	ENST00000572154	human	ensembl	69_37n	-1	putative	splice_site	c.93+2	e1+2	1.000	-	-	-	no_errors	CLDN6	HGNC	ENSG00000184697	163	1	0.6	94	22	18.8	-	-	-	C	3065928	A	C	3065928	5	2	67	1	0	0	0	0	0	0	1	0	3519	159	6	5	571	5	CLDN6	16	3065928	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	783707	3065928	87288825	977	4339										
MEFV	0	genome.wustl.edu	37	chr16	3293517	3293517	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtcttgtctccaacctccAcctcccagtaacggcggcca	7	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	3293517	3293517	A	C	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.1970	p.V657G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	84	0	0	164	25	13.16	-	-	-	C	3293517	A	C	3293517	3	2	67	1	0	0	0	0	1	0	0	0	9530	159	6	5	379	5	MEFV	16	3293517	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	227589	3293517	87061236	978	4340										
C16orf90	0	genome.wustl.edu	37	chr16	3543956	3543956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggactaggctgggggagggcAcccttgtctgggtccatgct	17	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	3543956	3543956	A	C	SNP	C16orf90	ENST00000399645	human	ensembl	69_37n	-1	putative	missense	c.457	p.C153G	0.968	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C16orf90	HGNC	ENSG00000215131	60	0	0	80	21	20.79	-	-	-	C	3543956	A	C	3543956	3	2	67	1	0	0	0	0	1	0	0	0	1856	146	6	5	120	5	C16orf90	16	3543956	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	250439	3543956	86810797	979	4341										
CORO7	0	genome.wustl.edu	37	chr16	4462374	4462374	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacctgaatggcagcccaggTgggccacgcgtcgcttgtcc	13	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	4462374	4462374	T	G	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	missense	c.215	p.H72P	0.870	pfam_WD40_repeat,smart_WD40_repeat	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	162	1	0.6	119	24	16.67	-	-	-	G	4462374	T	G	4462374	3	3	67	1	0	0	0	0	1	0	0	0	3789	1696	59	5	2666	5	CORO7	16	4462374	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	918418	4462374	85892379	980	4342										
GRIN2A	0	genome.wustl.edu	37	chr16	9862803	9862803	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggtgctcccagatgaaggTgatgaggctaagggccatgg	17	7	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	9862803	9862803	T	G	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.2500	p.T834P	1.000	prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	91	0	0	59	20	24.69	-	-	-	G	9862803	T	G	9862803	3	3	67	1	0	0	0	0	1	0	0	0	6830	1696	59	5	1902	5	GRIN2A	16	9862803	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5400429	9862803	80491950	981	4343										
ABCC1	0	genome.wustl.edu	37	chr16	16138369	16138369	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccgaaagagagttccaaggTggatgcgaatgaggaggtgg	18	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	16138369	16138369	T	G	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.872	p.V291G	0.811	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	192	1	0.52	240	31	11.36	-	-	-	G	16138369	T	G	16138369	3	3	67	1	0	0	0	0	1	0	0	0	49	1696	59	5	902	5	ABCC1	16	16138369	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6275566	16138369	74216384	982	4344										
SYT17	0	genome.wustl.edu	37	chr16	19195354	19195354	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccctgctcctgaccgtggTggattttgataagttctccc	10	12	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	19195354	19195354	T	G	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	missense	c.836	p.V279G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	112	0	0	111	25	18.38	-	-	-	G	19195354	T	G	19195354	3	3	67	1	0	0	0	0	1	0	0	0	15565	1696	59	5	854	5	SYT17	16	19195354	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3056985	19195354	71159399	983	4345										
IQCK	0	genome.wustl.edu	37	chr16	19746913	19746913	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcctgtgtttggggtcacttAcccagttccagccacaccat	9	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	19746913	19746913	A	C	SNP	IQCK	ENST00000568387	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IQCK	HGNC	ENSG00000174628	106	1	0.93	54	19	26.03	-	-	-	C	19746913	A	C	19746913	1	2	67	0	1	0	0	0	0	0	0	0	7867	406	14	5		5	IQCK	16	19746913	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	551559	19746913	70607840	984	4346										
ACSM1	0	genome.wustl.edu	37	chr16	20693617	20693617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagccacccttcacggctgTgatcagacaccaggagcttg	10	15	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	20693617	20693617	T	G	SNP	ACSM1	ENST00000307493	human	ensembl	69_37n	-1	known	missense	c.572	p.H191P	0.003	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743	69	0	0	110	13	10.57	-	-	-	G	20693617	T	G	20693617	3	3	67	1	0	0	0	0	1	0	0	0	182	1696	59	5	1205	5	ACSM1	16	20693617	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	946704	20693617	69661136	985	4347										
VWA3A	0	genome.wustl.edu	37	chr16	22159573	22159573	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcccctacctgcagcaggTgaagacagagctggttttgc	14	11	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	22159573	22159573	T	G	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.2930	p.V977G	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	169	0	0	268	38	12.38	-	-	-	G	22159573	T	G	22159573	3	3	67	1	0	0	0	0	1	0	0	0	17337	1696	59	5	3040	5	VWA3A	16	22159573	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1465956	22159573	68195180	986	4348										
POLR3E	0	genome.wustl.edu	37	chr16	22326411	22326411	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttccccttcccaccgcaggTgcggttctcccggccggagt	11	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	22326411	22326411	T	G	SNP	POLR3E	ENST00000299853	human	ensembl	69_37n	1	known	missense	c.524	p.V175G	1.000	pfam_RNA_pol_III_Rpc5	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	116	0	0	62	18	22.22	-	-	-	G	22326411	T	G	22326411	3	3	67	1	0	0	0	0	1	0	0	0	12306	1710	59	5	554	5	POLR3E	16	22326411	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	166838	22326411	68028342	987	4349										
EARS2	0	genome.wustl.edu	37	chr16	23541168	23541168	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaggacctgcagcttccccAccagctggcgcctctggctc	10	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	23541168	23541168	A	C	SNP	EARS2	ENST00000341597	human	ensembl	69_37n	-1	known	missense	c.1118	p.V373G	0.997	superfamily_aa-tRNA-synth_I_codon-bd,tigrfam_Glu-tRNA-synth_Ib_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Glu-tRNA-synth_Ib_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356	60	0	0	91	26	22.22	-	-	-	C	23541168	A	C	23541168	3	2	67	1	0	0	0	0	1	0	0	0	4913	159	6	5	469	5	EARS2	16	23541168	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1214757	23541168	66813585	988	4350										
EARS2	0	genome.wustl.edu	37	chr16	23541198	23541198	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcctctggctctcattgctcAccagccgctggaggtgcagt	12	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	23541198	23541198	A	C	SNP	EARS2	ENST00000341597	human	ensembl	69_37n	-1	known	missense	c.1088	p.V363G	0.951	superfamily_aa-tRNA-synth_I_codon-bd,tigrfam_Glu-tRNA-synth_Ib_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Glu-tRNA-synth_Ib_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356	50	0	0	63	44	41.12	-	-	-	C	23541198	A	C	23541198	3	2	67	1	0	0	0	0	1	0	0	0	4913	159	6	5	499	5	EARS2	16	23541198	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	30	23541198	66813555	989	4351										
CACNG3	0	genome.wustl.edu	37	chr16	24372911	24372911	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctacttttgcccgcctcccAccctacaggtatcgattccg	6	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	24372911	24372911	A	C	SNP	CACNG3	ENST00000005284	human	ensembl	69_37n	1	known	silent	c.675	p.P225	0.869	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	104	0	0	182	24	11.59	-	-	-	C	24372911	A	C	24372911	2	2	67	1	0	0	0	0	0	0	0	1	2583	146	6	5		5	CACNG3	16	24372911	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	831713	24372911	65981842	990	4352										
TNRC6A	0	genome.wustl.edu	37	chr16	24802508	24802508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacaaaaatcaagccaagggTggtctgtttctgccagtgat	11	8	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	24802508	24802508	T	G	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.2545	p.W849G	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	158	1	0.62	162	32	16.41	-	-	-	G	24802508	T	G	24802508	3	3	67	1	0	0	0	0	1	0	0	0	16435	1696	59	5	2567	5	TNRC6A	16	24802508	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	429597	24802508	65552245	991	4353										
ARHGAP17	0	genome.wustl.edu	37	chr16	24942175	24942175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagctgagtggacaccaggAggttgggggggtgggggcac	21	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	24942175	24942175	A	G	SNP	ARHGAP17	ENST00000573765	human	ensembl	69_37n	-1	putative	missense	c.547	p.S183P	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP17	HGNC	ENSG00000140750	115	0	0	184	33	15.21	-	-	-	G	24942175	A	G	24942175	3	3	67	1	0	0	0	0	1	0	0	0	869	291	11	5	208	5	ARHGAP17	16	24942175	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	139667	24942175	65412578	992	4354										
ARHGAP17	0	genome.wustl.edu	37	chr16	24942415	24942415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcaatgccatggggttgggAgggccctggctattgggttt	18	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	24942415	24942415	A	G	SNP	ARHGAP17	ENST00000573765	human	ensembl	69_37n	-1	putative	missense	c.307	p.S103P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP17	HGNC	ENSG00000140750	127	0	0	196	24	10.91	-	-	-	G	24942415	A	G	24942415	3	3	67	1	0	0	0	0	1	0	0	0	869	291	11	5	448	5	ARHGAP17	16	24942415	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	240	24942415	65412338	993	4355										
GTF3C1	0	genome.wustl.edu	37	chr16	27474860	27474860	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagccagaaccccacacccAcctttcccgtgctgcctggg	10	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	27474860	27474860	A	C	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	splice_site	c.5924+2	e35+2	1.000	-	-	-	no_errors	GTF3C1	HGNC	ENSG00000077235	97	0	0	104	20	16.13	-	-	-	C	27474860	A	C	27474860	5	2	67	1	0	0	0	0	0	0	1	0	6923	173	6	5	415	5	GTF3C1	16	27474860	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2532445	27474860	62879893	994	4356										
CLN3	0	genome.wustl.edu	37	chr16	28493927	28493927	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcaagccccacagggacatAccccagccatcatccgaacc	7	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	28493927	28493927	A	C	SNP	CLN3	ENST00000354630	human	ensembl	69_37n	-1	known	splice_site	c.855+2	e10+2	0.000	-	-	-	no_errors	CLN3	HGNC	ENSG00000188603	224	1	0.44	175	23	11.56	-	-	-	C	28493927	A	C	28493927	5	2	67	1	0	0	0	0	0	0	1	0	3573	406	14	5		5	CLN3	16	28493927	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1019067	28493927	61860826	995	4357										
ATXN2L	0	genome.wustl.edu	37	chr16	28848082	28848082	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcccagcagctccccttccAccccccggggaactgaagat	8	19	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	28848082	28848082	A	C	SNP	ATXN2L	ENST00000340394	human	ensembl	69_37n	1	known	missense	c.3119	p.H1040P	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	116	0	0	277	40	12.62	-	-	-	C	28848082	A	C	28848082	3	2	67	1	0	0	0	0	1	0	0	0	1216	159	6	5	3511	5	ATXN2L	16	28848082	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	354155	28848082	61506671	996	4358										
TAOK2	0	genome.wustl.edu	37	chr16	29999018	29999018	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taatccccgcaccacccaacAcccattagctctgttggcaa	5	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	29999018	29999018	A	C	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	missense	c.3425	p.H1142P	0.789	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	34	0	0	29	7	19.44	-	-	-	C	29999018	A	C	29999018	3	2	67	1	0	0	0	0	1	0	0	0	15640	159	6	5	3483	5	TAOK2	16	29999018	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1150936	29999018	60355735	997	4359										
HIRIP3	0	genome.wustl.edu	37	chr16	30006107	30006107	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggctgacttctgctgccAccccattctttgctgggggt	12	13	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30006107	30006107	A	C	SNP	HIRIP3	ENST00000279392	human	ensembl	69_37n	-1	known	missense	c.359	p.V120G	0.020	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929	90	0	0	137	35	20.23	-	-	-	C	30006107	A	C	30006107	3	2	67	1	0	0	0	0	1	0	0	0	7172	159	6	5	1327	5	HIRIP3	16	30006107	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7089	30006107	60348646	998	4360										
C16orf92	0	genome.wustl.edu	37	chr16	30035049	30035049	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagtttgcttgggtcctagcAcccagacccaagcgtgccac	11	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30035049	30035049	A	C	SNP	C16orf92	ENST00000561910	human	ensembl	69_37n	1	known	missense	c.52	p.T18P	0.001	NULL	NULL	-	no_errors	C16orf92	HGNC	ENSG00000167194	116	0	0	87	23	20.54	-	-	-	C	30035049	A	C	30035049	3	2	67	1	0	0	0	0	1	0	0	0	1858	173	6	5	152	5	C16orf92	16	30035049	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	28942	30035049	60319704	999	4361										
PRR14	0	genome.wustl.edu	37	chr16	30664296	30664296	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcatccaccggacctcttccAccctgaggcggcgatcaagg	11	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30664296	30664296	A	C	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	missense	c.376	p.T126P	0.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	68	0	0	97	23	19.01	-	-	-	C	30664296	A	C	30664296	3	2	67	1	0	0	0	0	1	0	0	0	12667	159	6	5	390	5	PRR14	16	30664296	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	629247	30664296	59690457	1000	4362										
FBRS	0	genome.wustl.edu	37	chr16	30676228	30676228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccgggcctgctgccaccccAcggcccccacatggtgagct	11	20	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30676228	30676228	A	C	SNP	FBRS	ENST00000356166	human	ensembl	69_37n	1	known	missense	c.1550	p.H517P	0.999	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860	304	2	0.65	493	57	10.31	-	-	-	C	30676228	A	C	30676228	3	2	67	1	0	0	0	0	1	0	0	0	5753	174	6	5		5	FBRS	16	30676228	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	11932	30676228	59678525	1001	4363										
SRCAP	0	genome.wustl.edu	37	chr16	30734381	30734381	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttcctccattggccccagcAccccggcctccgagctctgg	10	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30734381	30734381	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.3990	p.A1330	0.998	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	141	1	0.69	130	43	24.71	-	-	-	C	30734381	A	C	30734381	2	2	67	1	0	0	0	0	0	0	0	1	15226	146	6	5		5	SRCAP	16	30734381	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	58153	30734381	59620372	1002	4364										
RNF40	0	genome.wustl.edu	37	chr16	30779794	30779794	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgatcgggagaaggccaaggTggaagaaaccaagcggaagg	17	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30779794	30779794	T	G	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.1922	p.V641G	0.994	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	132	0	0	78	15	16.13	-	-	-	G	30779794	T	G	30779794	3	3	67	1	0	0	0	0	1	0	0	0	13579	1696	59	5	1968	5	RNF40	16	30779794	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	45413	30779794	59574959	1003	4365										
SETD1A	0	genome.wustl.edu	37	chr16	30972724	30972724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaggtagagatcctccttcAcccccgtacgcgcaagcacc	9	16	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	30972724	30972724	A	C	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	missense	c.383	p.H128P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	74	0	0	48	19	27.94	-	-	-	C	30972724	A	C	30972724	3	2	67	1	0	0	0	0	1	0	0	0	14218	159	6	5	393	5	SETD1A	16	30972724	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	192930	30972724	59382029	1004	4366										
ZNF646	0	genome.wustl.edu	37	chr16	31092019	31092019	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagagccactgtcctggggTgcagggaaggcaggtgggtg	19	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	31092019	31092019	T	G	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	silent	c.4374	p.G1458	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	144	1	0.68	178	30	14.42	-	-	-	G	31092019	T	G	31092019	2	3	67	1	0	0	0	0	0	0	0	1	18158	1683	59	5		5	ZNF646	16	31092019	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	119295	31092019	59262734	1005	4367										
PRSS36	0	genome.wustl.edu	37	chr16	31154978	31154978	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggtcttctggggctgggTgggaaaggcaggcccaggct	19	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	31154978	31154978	T	G	SNP	PRSS36	ENST00000268281	human	ensembl	69_37n	-1	known	missense	c.901	p.T301P	0.133	pirsf_Pept_S1A_polyserase-2	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS36	HGNC	ENSG00000178226	85	0	0	140	24	14.63	-	-	-	G	31154978	T	G	31154978	3	3	67	1	0	0	0	0	1	0	0	0	12705	1696	59	5	1702	5	PRSS36	16	31154978	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	62959	31154978	59199775	1006	4368										
PRSS36	0	genome.wustl.edu	37	chr16	31157217	31157217	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgtagagacattgacaggTggcctcgcccagcagcctta	12	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	31157217	31157217	T	G	SNP	PRSS36	ENST00000268281	human	ensembl	69_37n	-1	known	missense	c.613	p.T205P	0.549	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS36	HGNC	ENSG00000178226	90	0	0	92	14	13.08	-	-	-	G	31157217	T	G	31157217	3	3	67	1	0	0	0	0	1	0	0	0	12705	1696	59	5	1994	5	PRSS36	16	31157217	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2239	31157217	59197536	1007	4369										
ABCC11	0	genome.wustl.edu	37	chr16	48210907	48210907	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgatgccgtgaagcacggTgggtgtgttgtctctgtatt	15	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	48210907	48210907	T	G	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.3466	p.T1156P	0.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	156	1	0.63	79	20	20.2	-	-	-	G	48210907	T	G	48210907	3	3	67	1	0	0	0	0	1	0	0	0	51	1696	59	5	706	5	ABCC11	16	48210907	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	17053690	48210907	42143846	1008	4370										
CES1	0	genome.wustl.edu	37	chr16	55857561	55857561	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cataggttgatgccgcacccAccatcagcccccctccgtgg	9	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	55857561	55857561	A	C	SNP	CES1	ENST00000360526	human	ensembl	69_37n	-1	known	missense	c.440	p.V147G	0.013	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848	170	1	0.58	88	22	20	-	-	-	C	55857561	A	C	55857561	3	2	67	1	0	0	0	0	1	0	0	0	3298	159	6	5	1310	5	CES1	16	55857561	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7646654	55857561	34497192	1009	4371										
CETP	0	genome.wustl.edu	37	chr16	57017553	57017553	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttccctgagcacctgctggTggatttcctccagagcttga	10	13	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	57017553	57017553	T	G	SNP	CETP	ENST00000200676	human	ensembl	69_37n	1	known	missense	c.1457	p.V486G	0.997	pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237	157	0	0	103	17	14.17	-	-	-	G	57017553	T	G	57017553	3	3	67	1	0	0	0	0	1	0	0	0	3306	1696	59	5	1519	5	CETP	16	57017553	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1159992	57017553	33337200	1010	4372										
DOK4	0	genome.wustl.edu	37	chr16	57507498	57507498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacaaagcctcctggcaggTgggtgtggggcatggaagcg	17	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	57507498	57507498	T	G	SNP	DOK4	ENST00000566936	human	ensembl	69_37n	-1	putative	missense	c.889	p.T297P	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK4	HGNC	ENSG00000125170	145	1	0.66	93	18	16.07	-	-	-	G	57507498	T	G	57507498	3	3	67	1	0	0	0	0	1	0	0	0	4734	1711	59	5		5	DOK4	16	57507498	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	489945	57507498	32847255	1011	4373										
CNGB1	0	genome.wustl.edu	37	chr16	57965657	57965657	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagcttgggactataagggTgtctgatttggcaggagacg	16	5	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	57965657	57965657	T	G	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	missense	c.1498	p.T500P	1.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	204	0	0	92	19	17.12	-	-	-	G	57965657	T	G	57965657	3	3	67	1	0	0	0	0	1	0	0	0	3630	1696	59	5	2325	5	CNGB1	16	57965657	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	458159	57965657	32389096	1012	4374										
CNOT1	0	genome.wustl.edu	37	chr16	58579343	58579343	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtagctgtactgtggctgTggtggaaccgtggctgtaca	16	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	58579343	58579343	T	G	SNP	CNOT1	ENST00000567133	human	ensembl	69_37n	-1	novel	missense	c.178	p.T60P	0.988	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNOT1	HGNC	ENSG00000125107	361	1	0.28	280	43	13.27	-	-	-	G	58579343	T	G	58579343	3	3	67	1	0	0	0	0	1	0	0	0	3647	1683	59	5	3373	5	CNOT1	16	58579343	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	613686	58579343	31775410	1013	4375										
CES2	0	genome.wustl.edu	37	chr16	66971985	66971985	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccacacacacggggcaggTgctggggagtcttgtccatg	15	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	66971985	66971985	T	G	SNP	CES2	ENST00000317091	human	ensembl	69_37n	1	known	missense	c.314	p.V105G	0.953	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831	134	1	0.71	81	21	20.39	-	-	-	G	66971985	T	G	66971985	3	3	67	1	0	0	0	0	1	0	0	0	3299	1696	59	5	320	5	CES2	16	66971985	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8392642	66971985	23382768	1014	4376										
CES3	0	genome.wustl.edu	37	chr16	66995283	66995283	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctcctggcatgccctgccAcagccactggtaagacacac	9	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	66995283	66995283	A	C	SNP	CES3	ENST00000303334	human	ensembl	69_37n	1	known	missense	c.73	p.T25P	0.007	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828	208	1	0.47	118	22	15.71	-	-	-	C	66995283	A	C	66995283	3	2	67	1	0	0	0	0	1	0	0	0	3300	159	6	5	75	5	CES3	16	66995283	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	23298	66995283	23359470	1015	4377										
CBFB	0	genome.wustl.edu	37	chr16	67070629	67070638	+	Frame_Shift_Del	DEL	TATGTCGACT	TATGTCGACT	-													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacaaacacctagccgagagTatgtcgacttagaaagagaa							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	TATGTCGACT	TATGTCGACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	67070629	67070638	TATGTCGACT	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_del	c.253_262	p.Y85fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	110	0	0	47	21	30.43	-	-	-	-	67070638	TATGTCGACT	-	67070629	7	5	67	1	0	1	0	1	0	0	0	0	2724	1638	57	0	263	0	CBFB	16	67070629	Frame_Shift_Del	DEL	TATGTCGACT	TCGA-A2-A0T5-01A-21D-A099-09	75346	67070629	23284124	1016	4378										
RLTPR	0	genome.wustl.edu	37	chr16	67685161	67685161	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggggctgggccccagggTgaagccgctgtgcgccaggc	19	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	67685161	67685161	T	G	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	silent	c.2256	p.G752	0.995	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	106	1	0.93	58	17	22.67	-	-	-	G	67685161	T	G	67685161	2	3	67	1	0	0	0	0	0	0	0	1	13480	1683	59	5		5	RLTPR	16	67685161	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	614532	67685161	22669592	1017	4379										
RANBP10	0	genome.wustl.edu	37	chr16	67765339	67765339	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagcagagttagggacaggTgaggaagggaaaggggaaag	20	2	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	67765339	67765339	T	G	SNP	RANBP10	ENST00000425512	human	ensembl	69_37n	-1	known	missense	c.529	p.T177P	0.000	NULL	pfam_SPRY_rcpt,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation	-	no_errors	RANBP10	HGNC	ENSG00000141084	241	2	0.82	113	20	14.93	-	-	-	G	67765339	T	G	67765339	3	3	67	1	0	0	0	0	1	0	0	0	13109	1711	59	5		5	RANBP10	16	67765339	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	80178	67765339	22589414	1018	4380										
EDC4	0	genome.wustl.edu	37	chr16	67912515	67912515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggtgtacagtatcctggAcctgcctgcagactattcgg	12	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	67912515	67912515	A	C	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	missense	c.1165	p.T389P	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	148	0	0	90	15	14.29	-	-	-	C	67912515	A	C	67912515	3	2	67	1	0	0	0	0	1	0	0	0	4943	275	10	5	1203	5	EDC4	16	67912515	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	147176	67912515	22442238	1019	4381										
SF3B3	0	genome.wustl.edu	37	chr16	70590860	70590860	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgtgtatcgtggaaatgggTgggactgagaagcaggatga	17	3	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	70590860	70590860	T	G	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	silent	c.1938	p.G646	0.999	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	263	1	0.37	155	26	14.36	-	-	-	G	70590860	T	G	70590860	2	3	67	1	0	0	0	0	0	0	0	1	14240	1683	59	5		5	SF3B3	16	70590860	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2678345	70590860	19763893	1020	4382										
PHLPP2	0	genome.wustl.edu	37	chr16	71712726	71712726	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcaggacttccaggcaattTcctgccataaccactctatc	5	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	71712726	71712726	T	C	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	silent	c.1200	p.G400	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	113	0	0	84	31	26.96	-	-	-	C	71712726	T	C	71712726	2	2	67	1	0	0	0	0	0	0	0	1	11929	1770	62	5		5	PHLPP2	16	71712726	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1121866	71712726	18642027	1021	4383										
PHLPP2	0	genome.wustl.edu	37	chr16	71748603	71748603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgctccataaaggtaaacAcagcctctctttacatcttc	4	13	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	71748603	71748603	A	C	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.96	p.C32W	0.997	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	281	2	0.7	176	21	10.66	-	-	-	C	71748603	A	C	71748603	3	2	67	1	0	0	0	0	1	0	0	0	11929	157	6	5	3947	5	PHLPP2	16	71748603	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	35877	71748603	18606150	1022	4384										
GLG1	0	genome.wustl.edu	37	chr16	74526923	74526923	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcacgcgatcgcggaaggTtttccacattgcaccggtat	10	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	74526923	74526923	T	G	SNP	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	missense	c.1166	p.N389T	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	163	0	0	108	17	13.6	-	-	-	G	74526923	T	G	74526923	3	3	67	1	0	0	0	0	1	0	0	0	6488	1725	60	5	2533	5	GLG1	16	74526923	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2778320	74526923	15827830	1023	4385										
WDR59	0	genome.wustl.edu	37	chr16	74972100	74972100	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaatgtgctcgctgtctgggTgccagtccaggccatggatt	14	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	74972100	74972100	T	G	SNP	WDR59	ENST00000262144	human	ensembl	69_37n	-1	known	missense	c.599	p.H200P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_UBQ-conjugating_enzyme/RWD,smart_WD40_repeat,smart_RWD-domain,pfscan_RWD-domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR59	HGNC	ENSG00000103091	222	0	0	171	25	12.69	-	-	-	G	74972100	T	G	74972100	3	3	67	1	0	0	0	0	1	0	0	0	17405	1696	59	5	2401	5	WDR59	16	74972100	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	445177	74972100	15382653	1024	4386										
PKD1L2	0	genome.wustl.edu	37	chr16	81187735	81187735	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccatccaggccatacagggTgacagtcacctgaaatccag	9	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	81187735	81187735	T	G	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	missense	c.4237	p.T1413P	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	208	0	0	131	21	13.46	-	-	-	G	81187735	T	G	81187735	3	3	67	1	0	0	0	0	1	0	0	0	12039	1696	59	5	3213	5	PKD1L2	16	81187735	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6215635	81187735	9167018	1025	4387										
PLCG2	0	genome.wustl.edu	37	chr16	81888144	81888144	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaaagaagactgctgcttcAccatcctatatggcactcag	8	11	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	81888144	81888144	A	C	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.289	p.T97P	1.000	smart_Pleckstrin_homology,pirsf_PLC-gamma,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	161	0	0	87	20	18.69	-	-	-	C	81888144	A	C	81888144	3	2	67	1	0	0	0	0	1	0	0	0	12110	159	6	5	295	5	PLCG2	16	81888144	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	700409	81888144	8466609	1026	4388										
PLCG2	0	genome.wustl.edu	37	chr16	81973542	81973542	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctccaacacaggagaaggTgacatttgaaatttatgacc	10	8	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	81973542	81973542	T	G	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.3359	p.V1120G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	120	0	0	106	25	18.94	-	-	-	G	81973542	T	G	81973542	3	3	67	1	0	0	0	0	1	0	0	0	12110	1696	59	5	3473	5	PLCG2	16	81973542	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	85398	81973542	8381211	1027	4389										
GINS2	0	genome.wustl.edu	37	chr16	85711855	85711855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagtactctccagaggctggAggttcgtgcggagtttgtac	15	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	85711855	85711855	A	G	SNP	GINS2	ENST00000253462	human	ensembl	69_37n	-1	known	missense	c.521	p.L174P	1.000	pirsf_GINS_Psf2_subgr	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	-	no_errors	GINS2	HGNC	ENSG00000131153	223	0	0	137	34	19.65	-	-	-	G	85711855	A	G	85711855	3	3	67	1	0	0	0	0	1	0	0	0	6440	304	11	5	40	5	GINS2	16	85711855	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3738313	85711855	4642898	1028	4390										
FBXO31	0	genome.wustl.edu	37	chr16	87377347	87377347	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggggaggcaggtacatccAcccgatgatgaacaggccgt	14	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	87377347	87377347	A	C	SNP	FBXO31	ENST00000311635	human	ensembl	69_37n	-1	known	missense	c.514	p.W172G	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO31	HGNC	ENSG00000103264	110	1	0.89	73	14	15.91	-	-	-	C	87377347	A	C	87377347	3	2	67	1	0	0	0	0	1	0	0	0	5787	159	6	5	1129	5	FBXO31	16	87377347	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1665492	87377347	2977406	1029	4391										
GALNS	0	genome.wustl.edu	37	chr16	88901678	88901678	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgacgtgaagaagacgaaggTgttgtccgcgacgtgcaggt	16	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	16	88901678	88901678	T	G	SNP	GALNS	ENST00000268695	human	ensembl	69_37n	-1	known	missense	c.841	p.T281P	0.987	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	GALNS	HGNC	ENSG00000141012	145	1	0.68	55	14	20.29	-	-	-	G	88901678	T	G	88901678	3	3	67	1	0	0	0	0	1	0	0	0	6256	1696	59	5	755	5	GALNS	16	88901678	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1524331	88901678	1453075	1030	4392										
ABR	0	genome.wustl.edu	37	chr17	953811	953811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctccgctgtgtcccggaacAccctggttttggctttgctg	12	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	953811	953811	A	C	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.1625	p.V542G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	166	0	0	103	19	15.57	-	-	-	C	953811	A	C	953811	3	2	67	1	0	0	0	0	1	0	0	0	99	159	6	5	990	5	ABR	17	953811	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		953811	80241399	1031	4393										
PRPF8	0	genome.wustl.edu	37	chr17	1577787	1577787	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcagaagagacggatggggTgggcagcctcagtggctatg	18	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	1577787	1577787	T	G	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.3248	p.H1083P	1.000	superfamily_Cupredoxin	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	146	0	0	86	15	14.71	-	-	-	G	1577787	T	G	1577787	3	3	67	1	0	0	0	0	1	0	0	0	12656	1696	59	5	3851	5	PRPF8	17	1577787	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	623976	1577787	79617423	1032	4394										
SERPINF2	0	genome.wustl.edu	37	chr17	1649140	1649140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctggtggctcaaacgtccAcctgccccaacctcatcctg	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	1649140	1649140	A	C	SNP	SERPINF2	ENST00000324015	human	ensembl	69_37n	1	known	missense	c.304	p.T102P	0.962	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711	132	1	0.75	130	23	15.03	-	-	-	C	1649140	A	C	1649140	3	2	67	1	0	0	0	0	1	0	0	0	14203	159	6	5	328	5	SERPINF2	17	1649140	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	71353	1649140	79546070	1033	4395										
SMG6	0	genome.wustl.edu	37	chr17	2203370	2203370	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcgtcgtgggtttccctcAccccctccccttttcccatc	7	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	2203370	2203370	A	C	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.677	p.V226G	0.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	168	0	0	114	19	14.29	-	-	-	C	2203370	A	C	2203370	3	2	67	1	0	0	0	0	1	0	0	0	14886	159	6	5	3654	5	SMG6	17	2203370	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	554230	2203370	78991840	1034	4396										
RAP1GAP2	0	genome.wustl.edu	37	chr17	2883661	2883661	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtccctcagattgcaaaggTgagaaaccaacccgtgagag	11	10	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	2883661	2883661	T	G	SNP	RAP1GAP2	ENST00000542807	human	ensembl	69_37n	1	known	splice_site	c.675+2	e9+2	1.000	-	-	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359	165	0	0	101	21	17.21	-	-	-	G	2883661	T	G	2883661	5	3	67	1	0	0	0	0	0	0	1	0	13121	1710	59	5	711	5	RAP1GAP2	17	2883661	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	680291	2883661	78311549	1035	4397										
TRPV3	0	genome.wustl.edu	37	chr17	3421962	3421962	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttgaggaggagaacaaaggTgaggatgacataggtgatga	17	2	0	6			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	3421962	3421962	T	G	SNP	TRPV3	ENST00000301365	human	ensembl	69_37n	-1	known	missense	c.1993	p.T665P	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	194	1	0.51	151	20	11.49	-	-	-	G	3421962	T	G	3421962	3	3	67	1	0	0	0	0	1	0	0	0	16693	1696	59	5	395	5	TRPV3	17	3421962	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	538301	3421962	77773248	1036	4398										
P2RX1	0	genome.wustl.edu	37	chr17	3803053	3803053	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggtgatgccaaccactccAccctgccagggacacaagta	9	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	3803053	3803053	A	C	SNP	P2RX1	ENST00000225538	human	ensembl	69_37n	-1	known	silent	c.750	p.G250	0.049	pfam_P2X_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X1_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX1	HGNC	ENSG00000108405	132	1	0.75	85	21	19.81	-	-	-	C	3803053	A	C	3803053	2	2	67	1	0	0	0	0	0	0	0	1	11412	146	6	5		5	P2RX1	17	3803053	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	381091	3803053	77392157	1037	4399										
ZZEF1	0	genome.wustl.edu	37	chr17	3916827	3916827	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctggcgacaggccacgcccAccagccattcccaaattttt	7	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	3916827	3916827	A	C	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.8495	p.V2832G	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	76	0	0	39	14	26.42	-	-	-	C	3916827	A	C	3916827	3	2	67	1	0	0	0	0	1	0	0	0	18346	159	6	5	406	5	ZZEF1	17	3916827	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	113774	3916827	77278383	1038	4400										
ANKFY1	0	genome.wustl.edu	37	chr17	4074080	4074080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgactccctggttgttattcAccccgaggcgagcccccgac	10	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	4074080	4074080	A	C	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.3341	p.V1114G	0.992	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	162	1	0.61	71	16	17.98	-	-	-	C	4074080	A	C	4074080	3	2	67	1	0	0	0	0	1	0	0	0	626	159	6	5	306	5	ANKFY1	17	4074080	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	157253	4074080	77121130	1039	4401										
PELP1	0	genome.wustl.edu	37	chr17	4578608	4578608	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggtccaaggcctcaaggTggatagagggcagcagcagc	16	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	4578608	4578608	T	G	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.1550	p.H517P	1.000	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	110	0	0	57	12	17.14	-	-	-	G	4578608	T	G	4578608	3	3	67	1	0	0	0	0	1	0	0	0	11798	1696	59	5	2306	5	PELP1	17	4578608	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	504528	4578608	76616602	1040	4402										
ZMYND15	0	genome.wustl.edu	37	chr17	4647126	4647126	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcctgtgcccccacatccAccccggggtgtttttggtga	10	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	4647126	4647126	A	C	SNP	ZMYND15	ENST00000433935	human	ensembl	69_37n	1	known	silent	c.1362	p.P454	0.976	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497	80	0	0	58	19	24.36	-	-	-	C	4647126	A	C	4647126	2	2	67	1	0	0	0	0	0	0	0	1	17804	146	6	5		5	ZMYND15	17	4647126	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	68518	4647126	76548084	1041	4403										
SLC25A11	0	genome.wustl.edu	37	chr17	4841316	4841316	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccccagaatggcttcctcAccagcccgttcttgtattcc	7	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	4841316	4841316	A	C	SNP	SLC25A11	ENST00000225665	human	ensembl	69_37n	-1	known	splice_site	c.789+2	e7+2	1.000	-	-	-	no_errors	SLC25A11	HGNC	ENSG00000108528	121	1	0.82	150	25	14.2	-	-	-	C	4841316	A	C	4841316	5	2	67	1	0	0	0	0	0	0	1	0	14562	173	6	5	161	5	SLC25A11	17	4841316	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	194190	4841316	76353894	1042	4404										
ZNF594	0	genome.wustl.edu	37	chr17	5086844	5086844	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttattgcataaatatggcttCcccctactgtggattctctg	7	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	5086844	5086844	C	T	SNP	ZNF594	ENST00000399604	human	ensembl	69_37n	-1	known	silent	c.708	p.G236	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626	101	1	0.97	74	12	13.95	-	-	-	T	5086844	C	T	5086844	2	4	67	1	0	0	0	0	0	0	0	1	18120	842	30	2		2	ZNF594	17	5086844	Silent	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	245528	5086844	76108366	1043	4405										
PITPNM3	0	genome.wustl.edu	37	chr17	6376048	6376048	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgctgacaggcggcaccaggTggaacttgggctccagcagt	15	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	6376048	6376048	T	G	SNP	PITPNM3	ENST00000262483	human	ensembl	69_37n	-1	known	missense	c.1358	p.H453P	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	129	1	0.75	50	12	19.35	-	-	-	G	6376048	T	G	6376048	3	3	67	1	0	0	0	0	1	0	0	0	12026	1696	59	5	1606	5	PITPNM3	17	6376048	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1289204	6376048	74819162	1044	4406										
PITPNM3	0	genome.wustl.edu	37	chr17	6380367	6380367	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accttgagaggaaggcatggTgctgggtgatggcctcgcag	17	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	6380367	6380367	T	G	SNP	PITPNM3	ENST00000262483	human	ensembl	69_37n	-1	known	missense	c.1067	p.H356P	1.000	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	114	1	0.87	71	12	14.46	-	-	-	G	6380367	T	G	6380367	3	3	67	1	0	0	0	0	1	0	0	0	12026	1696	59	5	1905	5	PITPNM3	17	6380367	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4319	6380367	74814843	1045	4407										
BCL6B	0	genome.wustl.edu	37	chr17	6928491	6928491	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctcaagacacctctggatcAccctctgaacgggctcgtcc	9	16	4	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	6928491	6928491	A	C	SNP	BCL6B	ENST00000293805	human	ensembl	69_37n	1	known	silent	c.861	p.S287	0.077	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940	143	1	0.68	130	31	19.14	-	-	-	C	6928491	A	C	6928491	2	2	67	1	0	0	0	0	0	0	0	1	1381	146	6	5		5	BCL6B	17	6928491	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	548124	6928491	74266719	1046	4408										
ASGR1	0	genome.wustl.edu	37	chr17	7077497	7077497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccaccaggtgcgcgtccTccagccggcagtagttgtcg	12	16	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7077497	7077497	T	C	SNP	ASGR1	ENST00000269299	human	ensembl	69_37n	-1	known	missense	c.554	p.E185G	0.838	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR1	HGNC	ENSG00000141505	76	0	0	54	22	28.95	-	-	-	C	7077497	T	C	7077497	3	2	67	1	0	0	0	0	1	0	0	0	1043	1551	54	5	333	5	ASGR1	17	7077497	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	149006	7077497	74117713	1047	4409										
NEURL4	0	genome.wustl.edu	37	chr17	7226126	7226126	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgttgtccatggggccggTggcattggtgatggacactt	16	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7226126	7226126	T	G	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.2653	p.T885P	1.000	superfamily_ConA-like_lec_gl	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	174	1	0.57	121	21	14.79	-	-	-	G	7226126	T	G	7226126	3	3	67	1	0	0	0	0	1	0	0	0	10419	1696	59	5	2091	5	NEURL4	17	7226126	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	148629	7226126	73969084	1048	4410										
CHRNB1	0	genome.wustl.edu	37	chr17	7358701	7358701	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactgttcttctccaggaagTggctggggtcggggaacaga	15	9	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7358701	7358701	T	G	SNP	CHRNB1	ENST00000306071	human	ensembl	69_37n	1	known	missense	c.1143	p.S381R	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB1	HGNC	ENSG00000170175	119	1	0.83	120	17	12.41	-	-	-	G	7358701	T	G	7358701	3	3	67	1	0	0	0	0	1	0	0	0	3419	1693	59	5	1177	5	CHRNB1	17	7358701	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	132575	7358701	73836509	1049	4411										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7460122	7460122	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgggacagtgagtggctgggAggaagccagaatcaacagct	16	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7460122	7460122	A	G	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	missense	c.401	p.E134G	0.975	pfam_TNF,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	101	0	0	37	12	24.49	-	-	-	G	7460122	A	G	7460122	3	3	67	1	0	0	0	0	1	0	0	0	16399	304	11	5	423	5	TNFSF12-TNFSF13	17	7460122	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	101421	7460122	73735088	1050	4412										
DNAH2	0	genome.wustl.edu	37	chr17	7671381	7671381	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attagccaaagagtataaggTggggagaaacggcggggagg	18	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7671381	7671381	T	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	splice_site	c.3837+2	e22+2	0.979	-	-	-	no_errors	DNAH2	HGNC	ENSG00000183914	97	0	0	60	16	21.05	-	-	-	G	7671381	T	G	7671381	5	3	67	1	0	0	0	0	0	0	1	0	4638	1710	59	5	3925	5	DNAH2	17	7671381	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	211259	7671381	73523829	1051	4413										
DNAH2	0	genome.wustl.edu	37	chr17	7696445	7696445	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacatgtttgggtcccagccAcccctggagctgatccgcct	11	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7696445	7696445	A	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.7491	p.P2497	0.901	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	113	1	0.87	63	19	23.17	-	-	-	C	7696445	A	C	7696445	2	2	67	1	0	0	0	0	0	0	0	1	4638	146	6	5		5	DNAH2	17	7696445	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	25064	7696445	73498765	1052	4414										
CHD3	0	genome.wustl.edu	37	chr17	7812031	7812031	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtagccatggctatgcacggTggcaggacatccagaatgat	13	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7812031	7812031	T	G	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.5278	p.W1760G	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	120	1	0.83	153	24	13.48	-	-	-	G	7812031	T	G	7812031	3	3	67	1	0	0	0	0	1	0	0	0	3355	1696	59	5	5701	5	CHD3	17	7812031	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	115586	7812031	73383179	1053	4415										
KCNAB3	0	genome.wustl.edu	37	chr17	7826790	7826790	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcacctgtagcgcgcccaggTgttctatcaactgctccgca	9	15	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	7826790	7826790	T	G	SNP	KCNAB3	ENST00000303790	human	ensembl	69_37n	-1	known	missense	c.1121	p.H374P	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049	57	0	0	29	13	29.55	-	-	-	G	7826790	T	G	7826790	3	3	67	1	0	0	0	0	1	0	0	0	8065	1696	59	5	101	5	KCNAB3	17	7826790	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	14759	7826790	73368420	1054	4416										
PER1	0	genome.wustl.edu	37	chr17	8048062	8048062	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggctccaggaggccccaggTggctacctcgctcgccaagg	14	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8048062	8048062	T	G	SNP	PER1	ENST00000354903	human	ensembl	69_37n	-1	putative	missense	c.2420	p.H807P	0.899	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	33	0	0	12	8	40	-	-	-	G	8048062	T	G	8048062	3	3	67	1	0	0	0	0	1	0	0	0	11802	1711	59	5		5	PER1	17	8048062	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	221272	8048062	73147148	1055	4417										
PFAS	0	genome.wustl.edu	37	chr17	8158845	8158845	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccccccgtcagctgaggTggaagccattgctctggcta	11	15	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8158845	8158845	T	G	SNP	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	missense	c.410	p.V137G	0.613	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	112	0	0	66	12	15.38	-	-	-	G	8158845	T	G	8158845	3	3	67	1	0	0	0	0	1	0	0	0	11828	1696	59	5	424	5	PFAS	17	8158845	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	110783	8158845	73036365	1056	4418										
PFAS	0	genome.wustl.edu	37	chr17	8168691	8168691	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatgcctgtgaggctatggTggcagtgatggcagccctgg	18	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8168691	8168691	T	G	SNP	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	missense	c.2366	p.V789G	1.000	superfamily_PurM_N-like,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	143	0	0	92	17	15.6	-	-	-	G	8168691	T	G	8168691	3	3	67	1	0	0	0	0	1	0	0	0	11828	1696	59	5	2436	5	PFAS	17	8168691	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9846	8168691	73026519	1057	4419										
ARHGEF15	0	genome.wustl.edu	37	chr17	8222851	8222851	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtgttcagagtcgtctgcAcctgccaagactgaaggacg	12	11	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8222851	8222851	A	C	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	silent	c.2304	p.A768	0.005	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	161	1	0.61	88	28	24.14	-	-	-	C	8222851	A	C	8222851	2	2	67	1	0	0	0	0	0	0	0	1	900	146	6	5		5	ARHGEF15	17	8222851	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	54160	8222851	72972359	1058	4420										
ARHGEF15	0	genome.wustl.edu	37	chr17	8224238	8224238	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaacacgaaaggaggaggcAccttcgccagaaccagaggc	14	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8224238	8224238	A	C	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.2453	p.H818P	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	103	1	0.96	61	15	19.23	-	-	-	C	8224238	A	C	8224238	3	2	67	1	0	0	0	0	1	0	0	0	900	159	6	5	2511	5	ARHGEF15	17	8224238	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1387	8224238	72970972	1059	4421										
PIK3R5	0	genome.wustl.edu	37	chr17	8790438	8790438	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acaggacttcagggggcaggTgcatgaggcccagtacattg	15	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8790438	8790438	T	G	SNP	PIK3R5	ENST00000447110	human	ensembl	69_37n	-1	known	missense	c.1880	p.H627P	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	127	1	0.76	77	17	18.09	-	-	-	G	8790438	T	G	8790438	3	3	67	1	0	0	0	0	1	0	0	0	11996	1696	59	5	794	5	PIK3R5	17	8790438	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	566200	8790438	72404772	1060	4422										
PIK3R5	0	genome.wustl.edu	37	chr17	8794089	8794089	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggcccgggacgtcacagTgggccccaaaggtggcctgg	17	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	8794089	8794089	T	G	SNP	PIK3R5	ENST00000447110	human	ensembl	69_37n	-1	known	missense	c.623	p.H208P	0.981	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	175	0	0	70	12	14.46	-	-	-	G	8794089	T	G	8794089	3	3	67	1	0	0	0	0	1	0	0	0	11996	1696	59	5	2071	5	PIK3R5	17	8794089	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3651	8794089	72401121	1061	4423										
MYH1	0	genome.wustl.edu	37	chr17	10419332	10419332	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcctcggtaggctgtcaccAcctctgcattatacactggc	9	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	10419332	10419332	A	C	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.416	p.V139G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	273	1	0.36	233	26	10.04	-	-	-	C	10419332	A	C	10419332	3	2	67	1	0	0	0	0	1	0	0	0	10101	159	6	5	5547	5	MYH1	17	10419332	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1625243	10419332	70775878	1062	4424										
MYH2	0	genome.wustl.edu	37	chr17	10448749	10448749	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttttgcctcggtaggctgtcAccacctcgggcttatacaca							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	10448749	10448749	A	C	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.419	p.V140G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	273	1	0.36	180	34	15.81	-	-	-	C	10448749	A	C	10448749	3	2	67	1	0	0	0	0	1	0	0	0	10107	159	6	5	5550	5	MYH2	17	10448749	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	29417	10448749	70746461	1063	4425	36	2								
MYH2	0	genome.wustl.edu	37	chr17	10448752	10448752	+	Missense_Mutation	SNP	A	A	C													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcctcggtaggctgtcaccAcctcgggcttatacacaggc							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	10448752	10448752	A	C	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.416	p.V139G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	272	1	0.36	174	48	21.43	-	-	-	C	10448752	A	C	10448752	3	2	67	1	0	0	0	0	1	0	0	0	10107	159	6	5	5553	5	MYH2	17	10448752	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3	10448752	70746458	1064	4426	36	2								
MYH3	0	genome.wustl.edu	37	chr17	10535128	10535128	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcttcctctccctcccctcAcctgggtatgcagcagctgc	7	19	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	10535128	10535128	A	C	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	splice_site	c.5160+2	e33+2	1.000	-	-	-	no_errors	MYH3	HGNC	ENSG00000109063	122	0	0	107	20	15.62	-	-	-	C	10535128	A	C	10535128	5	2	67	1	0	0	0	0	0	0	1	0	10108	173	6	5	688	5	MYH3	17	10535128	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	86376	10535128	70660082	1065	4427										
TEKT3	0	genome.wustl.edu	37	chr17	15217422	15217422	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgttgcatcgaccctctccActccgcggaagtagccgaca	9	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	15217422	15217422	A	C	SNP	TEKT3	ENST00000338696	human	ensembl	69_37n	-1	known	missense	c.860	p.V287G	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409	137	1	0.72	117	26	18.18	-	-	-	C	15217422	A	C	15217422	3	2	67	1	0	0	0	0	1	0	0	0	15849	159	6	5	628	5	TEKT3	17	15217422	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4682294	15217422	65977788	1066	4428										
NCOR1	0	genome.wustl.edu	37	chr17	16029456	16029457	+	Frame_Shift_Ins	INS	-	-	T													0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttcttcttcttttttttctgINSttttttctgctttatcctct							TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	16029456	16029457	-	T	INS	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1574_1573	p.T525fs	1.000:1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	79	0	0	122	48	28.24	-	-	-	T	16029457	-	T	16029456	7	5	67	1	0	1	1	0	0	0	0	0	10307	1377	48	0	5876	0	NCOR1	17	16029456	Frame_Shift_Ins	INS	-	TCGA-A2-A0T5-01A-21D-A099-09	812034	16029456	65165754	1067	4429										
TNFRSF13B	0	genome.wustl.edu	37	chr17	16842968	16842968	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcctggtgtggcacccccAccttccagcacaagtggggt	13	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	16842968	16842968	A	C	SNP	TNFRSF13B	ENST00000437538	human	ensembl	69_37n	-1	known	splice_site	c.635+2	e4+2	0.000	-	-	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505	47	0	0	43	14	23.73	-	-	-	C	16842968	A	C	16842968	5	2	67	1	0	0	0	0	0	0	1	0	16382	159	6	5	110	5	TNFRSF13B	17	16842968	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	813512	16842968	64352242	1068	4430										
ALDH3A1	0	genome.wustl.edu	37	chr17	19643676	19643676	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgagtggcggcatccccggTgcccccataagccaccttct	11	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	19643676	19643676	T	G	SNP	ALDH3A1	ENST00000225740	human	ensembl	69_37n	-1	known	missense	c.922	p.T308P	0.426	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602	74	0	0	33	15	31.25	-	-	-	G	19643676	T	G	19643676	3	3	67	1	0	0	0	0	1	0	0	0	497	1696	59	5	459	5	ALDH3A1	17	19643676	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2800708	19643676	61551534	1069	4431										
LGALS9	0	genome.wustl.edu	37	chr17	25975952	25975952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcgcctgaggaacctgcccAccatcaacagactggaagtg	10	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	25975952	25975952	A	C	SNP	LGALS9	ENST00000395473	human	ensembl	69_37n	1	known	missense	c.1012	p.T338P	0.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS9	HGNC	ENSG00000168961	128	0	0	186	24	11.43	-	-	-	C	25975952	A	C	25975952	3	2	67	1	0	0	0	0	1	0	0	0	8803	159	6	5	1054	5	LGALS9	17	25975952	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6332276	25975952	55219258	1070	4432										
C17orf108	0	genome.wustl.edu	37	chr17	26207182	26207182	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagggaagcagctggctggTggcctcctccacagggacca	16	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	26207182	26207182	T	G	SNP	C17orf108	ENST00000508862	human	ensembl	69_37n	-1	novel	missense	c.247	p.T83P	0.000	NULL	NULL	-	no_errors	C17orf108	HGNC	ENSG00000232859	85	0	0	54	11	16.92	-	-	-	G	26207182	T	G	26207182	3	3	67	1	0	0	0	0	1	0	0	0	1867	1711	59	5		5	C17orf108	17	26207182	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	231230	26207182	54988028	1071	4433										
SLC13A2	0	genome.wustl.edu	37	chr17	26818809	26818809	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttcagcttcgccttccccAccatggtcatcttgctgctg	9	15	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	26818809	26818809	A	C	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	missense	c.964	p.T322P	0.978	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	222	2	0.88	211	24	10.13	-	-	-	C	26818809	A	C	26818809	3	2	67	1	0	0	0	0	1	0	0	0	14481	159	6	5	986	5	SLC13A2	17	26818809	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	611627	26818809	54376401	1072	4434										
ALDOC	0	genome.wustl.edu	37	chr17	26902013	26902013	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcccagctagaggcaccacAcccttgtcaacctgtagagg	10	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	26902013	26902013	A	C	SNP	ALDOC	ENST00000226253	human	ensembl	69_37n	-1	known	silent	c.336	p.G112	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107	178	0	0	116	14	10.77	-	-	-	C	26902013	A	C	26902013	2	2	67	1	0	0	0	0	0	0	0	1	509	146	6	5		5	ALDOC	17	26902013	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	83204	26902013	54293197	1073	4435										
SGK494	0	genome.wustl.edu	37	chr17	26939647	26939647	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcactcactaatgaaaaggTgccgttttccctgccagctg	9	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	26939647	26939647	T	G	SNP	SGK494	ENST00000301037	human	ensembl	69_37n	-1	known	missense	c.536	p.H179P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524	213	2	0.93	163	19	10.44	-	-	-	G	26939647	T	G	26939647	3	3	67	1	0	0	0	0	1	0	0	0	14301	1696	59	5	728	5	SGK494	17	26939647	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	37634	26939647	54255563	1074	4436										
SUPT6H	0	genome.wustl.edu	37	chr17	27028121	27028121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agccccagccctcttccagcTcccggcaacggcagcagcag	10	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27028121	27028121	T	C	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.4969	p.S1657P	1.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	190	1	0.52	186	27	12.62	-	-	-	C	27028121	T	C	27028121	3	2	67	1	0	0	0	0	1	0	0	0	15491	1551	54	5	5107	5	SUPT6H	17	27028121	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	88474	27028121	54167089	1075	4437										
ERAL1	0	genome.wustl.edu	37	chr17	27186250	27186250	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgtgggaggaaggaccaggTggggagctggttatccaaca	18	6	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27186250	27186250	T	G	SNP	ERAL1	ENST00000254928	human	ensembl	69_37n	1	known	silent	c.1140	p.G380	0.011	superfamily_KH_prok-type	pfam_GTP_binding_domain,pfam_MIRO-like,pfam_Dynamin_GTPase,pfam_AIG1,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,superfamily_KH_prok-type,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	ERAL1	HGNC	ENSG00000132591	315	1	0.32	173	24	12.12	-	-	-	G	27186250	T	G	27186250	2	3	67	1	0	0	0	0	0	0	0	1	5239	1683	59	5		5	ERAL1	17	27186250	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	158129	27186250	54008960	1076	4438										
FLOT2	0	genome.wustl.edu	37	chr17	27207547	27207547	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtgctggagggagggccgggTggctgctgaagagagtgggc	23	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27207547	27207547	T	G	SNP	FLOT2	ENST00000577789	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	FLOT2	HGNC	ENSG00000132589	114	1	0.86	77	21	21.21	-	-	-	G	27207547	T	G	27207547	1	3	67	0	1	0	0	0	0	0	0	0	5983	1711	59	5		5	FLOT2	17	27207547	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21297	27207547	53987663	1077	4439										
SEZ6	0	genome.wustl.edu	37	chr17	27287908	27287908	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcaagcagccagtgacaggTgaggttgttgctgtagttgc	14	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27287908	27287908	T	G	SNP	SEZ6	ENST00000317338	human	ensembl	69_37n	-1	known	missense	c.1324	p.T442P	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015	141	1	0.7	82	21	20.39	-	-	-	G	27287908	T	G	27287908	3	3	67	1	0	0	0	0	1	0	0	0	14230	1696	59	5	1721	5	SEZ6	17	27287908	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	80361	27287908	53907302	1078	4440										
PIPOX	0	genome.wustl.edu	37	chr17	27381663	27381663	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtggctgggcttgtgtccccAccacatctacggactgccca	11	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27381663	27381663	A	C	SNP	PIPOX	ENST00000323372	human	ensembl	69_37n	1	known	missense	c.761	p.H254P	0.925	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	-	no_errors	PIPOX	HGNC	ENSG00000179761	194	1	0.51	190	34	15.18	-	-	-	C	27381663	A	C	27381663	3	2	67	1	0	0	0	0	1	0	0	0	12017	159	6	5	779	5	PIPOX	17	27381663	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	93755	27381663	53813547	1079	4441										
CORO6	0	genome.wustl.edu	37	chr17	27946110	27946110	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggacattcctggcagtagggTgccaggagaggatgcccaca	15	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	27946110	27946110	T	G	SNP	CORO6	ENST00000345068	human	ensembl	69_37n	-1	known	missense	c.419	p.H140P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549	92	0	0	56	15	21.13	-	-	-	G	27946110	T	G	27946110	3	3	67	1	0	0	0	0	1	0	0	0	3788	1696	59	5	1031	5	CORO6	17	27946110	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	564447	27946110	53249100	1080	4442										
UTP6	0	genome.wustl.edu	37	chr17	30219317	30219317	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcgccaacatggcagagaatAccttgctaagtcgagtttta	9	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	30219317	30219317	A	C	SNP	UTP6	ENST00000261708	human	ensembl	69_37n	-1	known	missense	c.386	p.V129G	0.998	smart_HAT	pfam_U3_snoRNA_assoc-6,smart_HAT	-	no_errors	UTP6	HGNC	ENSG00000108651	152	0	0	111	20	15.04	-	-	-	C	30219317	A	C	30219317	3	2	67	1	0	0	0	0	1	0	0	0	17199	391	14	5	1463	5	UTP6	17	30219317	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2273207	30219317	50975893	1081	4443										
RHBDL3	0	genome.wustl.edu	37	chr17	30625152	30625152	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtggtgctgcagctgctggTgggggtgcccctggagatgg	20	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	30625152	30625152	T	G	SNP	RHBDL3	ENST00000269051	human	ensembl	69_37n	1	known	missense	c.710	p.V237G	1.000	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_HAND_2	-	no_errors	RHBDL3	HGNC	ENSG00000141314	214	1	0.47	113	24	17.52	-	-	-	G	30625152	T	G	30625152	3	3	67	1	0	0	0	0	1	0	0	0	13407	1696	59	5	732	5	RHBDL3	17	30625152	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	405835	30625152	50570058	1082	4444										
ZNF830	0	genome.wustl.edu	37	chr17	33289538	33289538	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatagagtgttaccgacgggTggaaaagctacggaatcgcc	14	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	33289538	33289538	T	G	SNP	ZNF830	ENST00000361952	human	ensembl	69_37n	1	known	missense	c.953	p.V318G	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783	105	0	0	66	15	18.52	-	-	-	G	33289538	T	G	33289538	3	3	67	1	0	0	0	0	1	0	0	0	18277	1696	59	5	955	5	ZNF830	17	33289538	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2664386	33289538	47905672	1083	4445										
LIG3	0	genome.wustl.edu	37	chr17	33325272	33325272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgacatgataacccgggTgatccaggagggattggagg	17	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	33325272	33325272	T	G	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.1946	p.V649G	1.000	pfam_DNA_ligase_ATP-dep_cent,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	292	2	0.67	299	37	10.95	-	-	-	G	33325272	T	G	33325272	3	3	67	1	0	0	0	0	1	0	0	0	8837	1696	59	5	1992	5	LIG3	17	33325272	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	35734	33325272	47869938	1084	4446										
UNC45B	0	genome.wustl.edu	37	chr17	33495247	33495247	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgcgagacggaccagctggTggccgtggaggccctcatcc	16	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	33495247	33495247	T	G	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	1	known	missense	c.1319	p.V440G	1.000	pfam_UNC-45/Ring3,superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	117	0	0	96	12	11.11	-	-	-	G	33495247	T	G	33495247	3	3	67	1	0	0	0	0	1	0	0	0	17086	1696	59	5	1353	5	UNC45B	17	33495247	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	169975	33495247	47699963	1085	4447										
AP2B1	0	genome.wustl.edu	37	chr17	33954684	33954684	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaagaatatgctacagaggTggatgttgactttgttcgaa	12	4	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	33954684	33954684	T	G	SNP	AP2B1	ENST00000312678	human	ensembl	69_37n	1	known	missense	c.1094	p.V365G	0.930	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP2B1	HGNC	ENSG00000006125	230	0	0	259	31	10.65	-	-	-	G	33954684	T	G	33954684	3	3	67	1	0	0	0	0	1	0	0	0	742	1696	59	5	1124	5	AP2B1	17	33954684	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	459437	33954684	47240526	1086	4448										
TAF15	0	genome.wustl.edu	37	chr17	34171776	34171776	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctatggaggagaccgaggTggaggctatggtggagaccg	20	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	34171776	34171776	T	G	SNP	TAF15	ENST00000588240	human	ensembl	69_37n	1	known	silent	c.1473	p.G491	0.004	NULL	pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	TAF15	HGNC	ENSG00000172660	441	0	0	384	49	11.26	-	-	-	G	34171776	T	G	34171776	2	3	67	1	0	0	0	0	0	0	0	1	15610	1683	59	5		5	TAF15	17	34171776	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	217092	34171776	47023434	1087	4449										
MYO19	0	genome.wustl.edu	37	chr17	34883455	34883455	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggaacaggcttgaaggggTtcaaggctaccagggtgcag	17	7	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	34883455	34883455	T	G	SNP	MYO19	ENST00000431794	human	ensembl	69_37n	-1	known	missense	c.227	p.N76T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO19	HGNC	ENSG00000141140	163	1	0.61	78	15	16.13	-	-	-	G	34883455	T	G	34883455	3	3	67	1	0	0	0	0	1	0	0	0	10139	1725	60	5	2833	5	MYO19	17	34883455	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	711679	34883455	46311755	1088	4450										
AATF	0	genome.wustl.edu	37	chr17	35413936	35413936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctctctttttggccagctccAccctcccgacgaaggccacg	8	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	35413936	35413936	A	C	SNP	AATF	ENST00000225402	human	ensembl	69_37n	1	known	missense	c.1655	p.H552P	0.001	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270	191	1	0.52	279	52	15.62	-	-	-	C	35413936	A	C	35413936	3	2	67	1	0	0	0	0	1	0	0	0	25	159	6	5	1701	5	AATF	17	35413936	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	530481	35413936	45781274	1089	4451										
AATF	0	genome.wustl.edu	37	chr17	35414128	35414128	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caagggcgctgtcccgcccaAccccgcctttaaacgccaca	8	19	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	35414128	35414128	A	C	SNP	AATF	ENST00000587618	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	AATF	HGNC	ENSG00000108270	37	0	0	17	8	32	-	-	-	C	35414128	A	C	35414128	1	2	67	0	1	0	0	0	0	0	0	0	25	58	2	5		5	AATF	17	35414128	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	192	35414128	45781082	1090	4452										
ACACA	0	genome.wustl.edu	37	chr17	35604997	35604997	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcataggacaagagcagtccAccgtcactcagccgatgtac	9	13	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	35604997	35604997	A	C	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	silent	c.2247	p.G749	1.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	151	0	0	170	23	11.92	-	-	-	C	35604997	A	C	35604997	2	2	67	1	0	0	0	0	0	0	0	1	106	146	6	5		5	ACACA	17	35604997	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	190869	35604997	45590213	1091	4453										
SYNRG	0	genome.wustl.edu	37	chr17	35913623	35913623	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagcagtcgagttttgtccAcccttcactgtgctgcccac	9	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	35913623	35913623	A	C	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	silent	c.2202	p.G734	0.045	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	119	1	0.83	77	16	16.84	-	-	-	C	35913623	A	C	35913623	2	2	67	1	0	0	0	0	0	0	0	1	15552	146	6	5		5	SYNRG	17	35913623	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	308626	35913623	45281587	1092	4454										
CISD3	0	genome.wustl.edu	37	chr17	36887634	36887634	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgaagacccccatcaaggTggagctggtggcagggaaaa	14	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	36887634	36887634	T	G	SNP	CISD3	ENST00000439660	human	ensembl	69_37n	1	known	missense	c.146	p.V49G	1.000	pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	-	no_errors	CISD3	HGNC	ENSG00000230055	127	0	0	95	16	14.29	-	-	-	G	36887634	T	G	36887634	3	3	67	1	0	0	0	0	1	0	0	0	3466	1696	59	5	156	5	CISD3	17	36887634	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	974011	36887634	44307576	1093	4455										
CACNB1	0	genome.wustl.edu	37	chr17	37333656	37333656	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggctgcggtagccatggTgcggttcagcagcggattgg	18	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	37333656	37333656	T	G	SNP	CACNB1	ENST00000394303	human	ensembl	69_37n	-1	known	missense	c.1279	p.T427P	1.000	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	112	0	0	69	14	16.87	-	-	-	G	37333656	T	G	37333656	3	3	67	1	0	0	0	0	1	0	0	0	2577	1696	59	5	630	5	CACNB1	17	37333656	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	446022	37333656	43861554	1094	4456										
GSDMA	0	genome.wustl.edu	37	chr17	38133243	38133243	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatatatgtgggacccagacAccctccctcgcctctgtgct	8	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	38133243	38133243	A	C	SNP	GSDMA	ENST00000301659	human	ensembl	69_37n	1	known	missense	c.1270	p.T424P	1.000	NULL	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914	224	1	0.44	160	30	15.62	-	-	-	C	38133243	A	C	38133243	3	2	67	1	0	0	0	0	1	0	0	0	6867	159	6	5	1312	5	GSDMA	17	38133243	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	799587	38133243	43061967	1095	4457										
NR1D1	0	genome.wustl.edu	37	chr17	38251774	38251774	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggggctgcatacacgtgggTggggcatagacggtgcccgt	18	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	38251774	38251774	T	G	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	missense	c.1171	p.T391P	0.996	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	120	1	0.81	135	27	16.56	-	-	-	G	38251774	T	G	38251774	3	3	67	1	0	0	0	0	1	0	0	0	10688	1696	59	5	689	5	NR1D1	17	38251774	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	118531	38251774	42943436	1096	4458										
NR1D1	0	genome.wustl.edu	37	chr17	38253472	38253472	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgtcatcactcaggctgggTggaatgctcccaaaggagcg	13	12	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	38253472	38253472	T	G	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	silent	c.216	p.P72	0.003	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	250	0	0	147	29	16.48	-	-	-	G	38253472	T	G	38253472	2	3	67	1	0	0	0	0	0	0	0	1	10688	1683	59	5		5	NR1D1	17	38253472	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1698	38253472	42941738	1097	4459										
NR1D1	0	genome.wustl.edu	37	chr17	38253500	38253500	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcccaaaggagcgagccgggTcttgggtgagggagccagtg	18	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	38253500	38253500	T	G	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	missense	c.188	p.D63A	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	288	1	0.34	176	34	16.11	-	-	-	G	38253500	T	G	38253500	3	3	67	1	0	0	0	0	1	0	0	0	10688	1667	58	5	1684	5	NR1D1	17	38253500	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28	38253500	42941710	1098	4460										
TNS4	0	genome.wustl.edu	37	chr17	38643342	38643342	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtctggctgttgctcctggTggctggacaggggttgctgg	19	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	38643342	38643342	T	G	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.1234	p.T412P	0.007	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	274	1	0.36	237	31	11.52	-	-	-	G	38643342	T	G	38643342	3	3	67	1	0	0	0	0	1	0	0	0	16440	1696	59	5	953	5	TNS4	17	38643342	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	389842	38643342	42551868	1099	4461										
KRTAP3-2	0	genome.wustl.edu	37	chr17	39155916	39155916	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagttgagcaggaagcaggTgggcacgcagggctgaggaa	20	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39155916	39155916	T	G	SNP	KRTAP3-2	ENST00000391587	human	ensembl	69_37n	-1	known	missense	c.190	p.T64P	1.000	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-2	HGNC	ENSG00000212900	263	1	0.37	161	23	12.37	-	-	-	G	39155916	T	G	39155916	3	3	67	1	0	0	0	0	1	0	0	0	8600	1696	59	5	110	5	KRTAP3-2	17	39155916	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	512574	39155916	42039294	1100	4462										
KRTAP3-1	0	genome.wustl.edu	37	chr17	39165112	39165112	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactcagtccgggagtcgggTgacagttgttgagcagccag	15	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39165112	39165112	T	G	SNP	KRTAP3-1	ENST00000391588	human	ensembl	69_37n	-1	known	missense	c.215	p.H72P	0.992	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-1	HGNC	ENSG00000212901	147	1	0.66	88	17	16.04	-	-	-	G	39165112	T	G	39165112	3	3	67	1	0	0	0	0	1	0	0	0	8599	1696	59	5	85	5	KRTAP3-1	17	39165112	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9196	39165112	42030098	1101	4463										
KRTAP9-8	0	genome.wustl.edu	37	chr17	39394379	39394379	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagcccaccactgtgaccAcctgcagcagcacaccctgc	9	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39394379	39394379	A	C	SNP	KRTAP9-8	ENST00000254072	human	ensembl	69_37n	1	known	missense	c.76	p.T26P	0.930	NULL	NULL	-	no_errors	KRTAP9-8	HGNC	ENSG00000187272	152	1	0.65	181	42	18.75	-	-	-	C	39394379	A	C	39394379	3	2	67	1	0	0	0	0	1	0	0	0	8630	159	6	5	78	5	KRTAP9-8	17	39394379	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	229267	39394379	41800831	1102	4464										
KRTAP9-4	0	genome.wustl.edu	37	chr17	39406399	39406399	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaccacttgcttccagcccAcctgtgtgtccagctgctgt	9	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39406399	39406399	A	C	SNP	KRTAP9-4	ENST00000334109	human	ensembl	69_37n	1	known	missense	c.427	p.T143P	0.001	NULL	NULL	-	no_errors	KRTAP9-4	HGNC	ENSG00000241595	240	2	0.83	259	41	13.58	-	-	-	C	39406399	A	C	39406399	3	2	67	1	0	0	0	0	1	0	0	0	8629	159	6	5	429	5	KRTAP9-4	17	39406399	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12020	39406399	41788811	1103	4465										
KRT33B	0	genome.wustl.edu	37	chr17	39522846	39522846	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctgttgatgtcggactccAccagctgccgcagggactgc	14	13	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39522846	39522846	A	C	SNP	KRT33B	ENST00000251646	human	ensembl	69_37n	-1	known	missense	c.464	p.V155G	1.000	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738	95	0	0	60	19	23.75	-	-	-	C	39522846	A	C	39522846	3	2	67	1	0	0	0	0	1	0	0	0	8523	159	6	5	770	5	KRT33B	17	39522846	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	116447	39522846	41672364	1104	4466										
KRT32	0	genome.wustl.edu	37	chr17	39622149	39622149	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccattgatgtcggcctccAccagctgccgcatggccagc	12	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39622149	39622149	A	C	SNP	KRT32	ENST00000225899	human	ensembl	69_37n	-1	known	missense	c.584	p.V195G	1.000	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	110	0	0	77	23	23	-	-	-	C	39622149	A	C	39622149	3	2	67	1	0	0	0	0	1	0	0	0	8521	159	6	5	782	5	KRT32	17	39622149	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	99303	39622149	41573061	1105	4467										
KRT15	0	genome.wustl.edu	37	chr17	39672354	39672354	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggcaggatataaggcccAccttgctgaagaaccaggcc	12	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39672354	39672354	A	C	SNP	KRT15	ENST00000254043	human	ensembl	69_37n	-1	known	splice_site	c.900+2	e4+2	1.000	-	-	-	no_errors	KRT15	HGNC	ENSG00000171346	89	0	0	95	20	17.24	-	-	-	C	39672354	A	C	39672354	5	2	67	1	0	0	0	0	0	0	1	0	8505	173	6	5	488	5	KRT15	17	39672354	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	50205	39672354	41522856	1106	4468										
KRT15	0	genome.wustl.edu	37	chr17	39674867	39674867	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgaaaacactaccagccccTccaccaaagccacagaccct	4	20	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39674867	39674867	T	C	SNP	KRT15	ENST00000254043	human	ensembl	69_37n	-1	known	silent	c.213	p.G71	0.698	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT15	HGNC	ENSG00000171346	573	3	0.52	475	64	11.81	-	-	-	C	39674867	T	C	39674867	2	2	67	1	0	0	0	0	0	0	0	1	8505	1538	54	5		5	KRT15	17	39674867	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2513	39674867	41520343	1107	4469										
KRT19	0	genome.wustl.edu	37	chr17	39681619	39681619	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaggggagcaaatgaatatAccccggcaccctagagacca	11	11	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39681619	39681619	A	C	SNP	KRT19	ENST00000593096	human	ensembl	69_37n	-1	putative	splice_site	c.1+2	e0+2	0.000	-	-	-	no_stop_codon	KRT19	HGNC	ENSG00000171345	56	0	0	34	5	12.2	-	-	-	C	39681619	A	C	39681619	5	2	67	1	0	0	0	0	0	0	1	0	8509	406	14	5		5	KRT19	17	39681619	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6752	39681619	41513591	1108	4470										
JUP	0	genome.wustl.edu	37	chr17	39777981	39777981	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacattgatctcaccacccAcctggcctcgcagggcgttc	8	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	39777981	39777981	A	C	SNP	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	missense	c.1175	p.V392G	1.000	pfam_F,superfamily_Prefoldin	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	180	0	0	107	20	15.75	-	-	-	C	39777981	A	C	39777981	3	2	67	1	0	0	0	0	1	0	0	0	8026	159	6	5		5	JUP	17	39777981	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	96362	39777981	41417229	1109	4471										
ACLY	0	genome.wustl.edu	37	chr17	40042517	40042517	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggatgttgtccagcatcccAcctgtgttgccaatcttaaa	8	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	40042517	40042517	A	C	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	silent	c.1920	p.G640	0.145	superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	120	0	0	76	17	18.28	-	-	-	C	40042517	A	C	40042517	2	2	67	1	0	0	0	0	0	0	0	1	143	146	6	5		5	ACLY	17	40042517	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	264536	40042517	41152693	1110	4472										
NAGLU	0	genome.wustl.edu	37	chr17	40689382	40689382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggccgtggaccctccagggTgggatgcgcccctgctcatg	16	14	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	40689382	40689382	T	G	SNP	NAGLU	ENST00000590358	human	ensembl	69_37n	1	putative	missense	c.38	p.V13G	0.002	NULL	pfam_NAGLU_tim-barrel	-	no_stop_codon:bad_bp_length_for_coding_region	NAGLU	HGNC	ENSG00000108784	84	0	0	49	17	25.76	-	-	-	G	40689382	T	G	40689382	3	3	67	1	0	0	0	0	1	0	0	0	10215	1711	59	5		5	NAGLU	17	40689382	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	646865	40689382	40505828	1111	4473										
TUBG1	0	genome.wustl.edu	37	chr17	40765753	40765753	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcccagatcaaccagctggTgggcccccactcctggactc	9	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	40765753	40765753	T	G	SNP	TUBG1	ENST00000251413	human	ensembl	69_37n	1	known	splice_site	c.693+2	e7+2	1.000	-	-	-	no_errors	TUBG1	HGNC	ENSG00000131462	301	1	0.33	180	23	11.33	-	-	-	G	40765753	T	G	40765753	5	3	67	1	0	0	0	0	0	0	1	0	16861	1710	59	5	721	5	TUBG1	17	40765753	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	76371	40765753	40429457	1112	4474										
IFI35	0	genome.wustl.edu	37	chr17	41165521	41165521	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagttgagtggccggagggTgttggtcactggatttcctg	16	8	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	41165521	41165521	T	G	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	missense	c.410	p.V137G	0.960	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	251	2	0.78	160	32	16.67	-	-	-	G	41165521	T	G	41165521	3	3	67	1	0	0	0	0	1	0	0	0	7570	1696	59	5	428	5	IFI35	17	41165521	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	399768	41165521	40029689	1113	4475										
TMEM106A	0	genome.wustl.edu	37	chr17	41369810	41369810	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccccaccagctgacccctcAcccaccatgacctgtctgct	6	21	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	41369810	41369810	A	C	SNP	TMEM106A	ENST00000331615	human	ensembl	69_37n	1	known	missense	c.779	p.H260P	0.071	NULL	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988	114	0	0	61	18	22.78	-	-	-	C	41369810	A	C	41369810	3	2	67	1	0	0	0	0	1	0	0	0	16115	159	6	5	805	5	TMEM106A	17	41369810	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	204289	41369810	39825400	1114	4476										
MPP2	0	genome.wustl.edu	37	chr17	41955329	41955329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatgcggctgctctcctccActgtccgtctcaggtccgcc	11	17	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	41955329	41955329	A	C	SNP	MPP2	ENST00000461854	human	ensembl	69_37n	-1	known	missense	c.1577	p.V526G	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP2	HGNC	ENSG00000108852	63	0	0	14	5	26.32	-	-	-	C	41955329	A	C	41955329	3	2	67	1	0	0	0	0	1	0	0	0	9806	159	6	5	157	5	MPP2	17	41955329	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	585519	41955329	39239881	1115	4477										
UBTF	0	genome.wustl.edu	37	chr17	42293020	42293020	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accttaactctcctccccccAccttcttcttctccggaagc	3	20	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	42293020	42293020	A	C	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	splice_site	c.474+2	e4+2	1.000	-	-	-	no_errors	UBTF	HGNC	ENSG00000108312	153	0	0	284	40	12.23	-	-	-	C	42293020	A	C	42293020	5	2	67	1	0	0	0	0	0	0	1	0	17006	173	6	5	1886	5	UBTF	17	42293020	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	337691	42293020	38902190	1116	4478										
SLC4A1	0	genome.wustl.edu	37	chr17	42335372	42335372	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acccaggaggccgccgaaggTgatggcgggtgacagtgcag	18	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	42335372	42335372	T	G	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.1264	p.T422P	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	122	0	0	50	17	24.64	-	-	-	G	42335372	T	G	42335372	3	3	67	1	0	0	0	0	1	0	0	0	14739	1696	59	5	1511	5	SLC4A1	17	42335372	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	42352	42335372	38859838	1117	4479										
GPATCH8	0	genome.wustl.edu	37	chr17	42478764	42478764	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcatctttatcatcttctccAccttcttcatctacagccac	1	16	8	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	42478764	42478764	A	C	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	silent	c.681	p.G227	0.994	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	174	0	0	80	22	21.57	-	-	-	C	42478764	A	C	42478764	2	2	67	1	0	0	0	0	0	0	0	1	6644	146	6	5		5	GPATCH8	17	42478764	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	143392	42478764	38716446	1118	4480										
ADAM11	0	genome.wustl.edu	37	chr17	42854935	42854935	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggagacatcagtagtgtcAccttctaccaccagggcaag	11	11	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	42854935	42854935	A	C	SNP	ADAM11	ENST00000200557	human	ensembl	69_37n	1	known	missense	c.1867	p.T623P	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670	86	0	0	68	20	22.73	-	-	-	C	42854935	A	C	42854935	3	2	67	1	0	0	0	0	1	0	0	0	235	159	6	5	1953	5	ADAM11	17	42854935	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	376171	42854935	38340275	1119	4481										
NMT1	0	genome.wustl.edu	37	chr17	43180407	43180407	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggtacttgaagcaatttcAccttacgcccgtcatgagcc	8	13	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	43180407	43180407	A	C	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	missense	c.1082	p.H361P	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	232	1	0.43	128	17	11.72	-	-	-	C	43180407	A	C	43180407	3	2	67	1	0	0	0	0	1	0	0	0	10575	159	6	5	1116	5	NMT1	17	43180407	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	325472	43180407	38014803	1120	4482										
PHB	0	genome.wustl.edu	37	chr17	47484119	47484119	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccatctggtcgaaggctcAccttttccaccacaaatctg	7	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	47484119	47484119	A	C	SNP	PHB	ENST00000300408	human	ensembl	69_37n	-1	known	splice_site	c.606+2	e5+2	1.000	-	-	-	no_errors	PHB	HGNC	ENSG00000167085	189	0	0	114	14	10.85	-	-	-	C	47484119	A	C	47484119	5	2	67	1	0	0	0	0	0	0	1	0	11888	173	6	5	218	5	PHB	17	47484119	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4303712	47484119	33711091	1121	4483										
ACSF2	0	genome.wustl.edu	37	chr17	48551154	48551154	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctttcacacacacccgaaggTgcaggaagtgcaggtgaggc	13	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	48551154	48551154	T	G	SNP	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	missense	c.1604	p.V535G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	133	0	0	120	18	12.86	-	-	-	G	48551154	T	G	48551154	3	3	67	1	0	0	0	0	1	0	0	0	175	1696	59	5	1654	5	ACSF2	17	48551154	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1067035	48551154	32644056	1122	4484										
SPAG9	0	genome.wustl.edu	37	chr17	49057223	49057223	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agacccacacgccatcccccAcccacgcaagctgtcgcact	6	21	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	49057223	49057223	A	C	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.3293	p.V1098G	1.000	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	251	2	0.78	134	28	17.28	-	-	-	C	49057223	A	C	49057223	3	2	67	1	0	0	0	0	1	0	0	0	15076	159	6	5	692	5	SPAG9	17	49057223	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	506069	49057223	32137987	1123	4485										
NOG	0	genome.wustl.edu	37	chr17	54672032	54672032	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagttacagatgtggctgTggtcgcagacattctgcccc	13	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	54672032	54672032	T	G	SNP	NOG	ENST00000332822	human	ensembl	69_37n	1	known	missense	c.448	p.W150G	1.000	pfam_Noggin,pirsf_Noggin	pfam_Noggin,pirsf_Noggin	-	no_errors	NOG	HGNC	ENSG00000183691	68	0	0	36	8	18.18	-	-	-	G	54672032	T	G	54672032	3	3	67	1	0	0	0	0	1	0	0	0	10591	1696	59	5	450	5	NOG	17	54672032	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	5614809	54672032	26523178	1124	4486										
CUEDC1	0	genome.wustl.edu	37	chr17	55943866	55943866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttctcgcaggccttcctccAccttgggtgcctcctgacgc	9	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	55943866	55943866	A	C	SNP	CUEDC1	ENST00000360238	human	ensembl	69_37n	-1	known	missense	c.1133	p.V378G	0.970	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	CUEDC1	HGNC	ENSG00000180891	122	1	0.8	66	21	23.86	-	-	-	C	55943866	A	C	55943866	3	2	67	1	0	0	0	0	1	0	0	0	4083	159	6	5	31	5	CUEDC1	17	55943866	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1271834	55943866	25251344	1125	4487										
TANC2	0	genome.wustl.edu	37	chr17	61497801	61497801	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagacctatcagtccacctcAcctgccctttctccaactca	3	19	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	61497801	61497801	A	C	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	silent	c.4458	p.S1486	0.826	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	147	1	0.67	126	25	16.56	-	-	-	C	61497801	A	C	61497801	2	2	67	1	0	0	0	0	0	0	0	1	15637	146	6	5		5	TANC2	17	61497801	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5553935	61497801	19697409	1126	4488										
CD79B	0	genome.wustl.edu	37	chr17	62007542	62007542	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaaccggatgccttggatggTgagggtggcgagagattcgt	17	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	62007542	62007542	T	G	SNP	CD79B	ENST00000392795	human	ensembl	69_37n	-1	known	missense	c.325	p.T109P	0.987	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like	-	no_errors	CD79B	HGNC	ENSG00000007312	148	0	0	182	34	15.74	-	-	-	G	62007542	T	G	62007542	3	3	67	1	0	0	0	0	1	0	0	0	3066	1696	59	5	383	5	CD79B	17	62007542	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	509741	62007542	19187668	1127	4489										
C17orf72	0	genome.wustl.edu	37	chr17	62078597	62078597	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccagcccccttcttccccAcccctgcttgtcagccctac	6	22	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	62078597	62078597	A	C	SNP	C17orf72	ENST00000425164	human	ensembl	69_37n	1	known	missense	c.397	p.T133P	0.000	NULL	NULL	-	no_errors	C17orf72	HGNC	ENSG00000224383	123	0	0	102	23	18.25	-	-	-	C	62078597	A	C	62078597	3	2	67	1	0	0	0	0	1	0	0	0	1894	159	6	5	411	5	C17orf72	17	62078597	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	71055	62078597	19116613	1128	4490										
AXIN2	0	genome.wustl.edu	37	chr17	63554620	63554620	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtgacctggcccttgcccAcccctggctgacacggtggg	14	15	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	63554620	63554620	A	C	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	missense	c.119	p.V40G	0.005	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	72	0	0	20	7	25	-	-	-	C	63554620	A	C	63554620	3	2	67	1	0	0	0	0	1	0	0	0	1241	159	6	5	2452	5	AXIN2	17	63554620	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1476023	63554620	17640590	1129	4491										
ABCA8	0	genome.wustl.edu	37	chr17	66871835	66871835	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tagtgggtggttaggagggcAcccctttccgtgtttctaaa	13	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	66871835	66871835	A	C	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	silent	c.4410	p.G1470	0.131	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	119	0	0	87	18	17.14	-	-	-	C	66871835	A	C	66871835	2	2	67	1	0	0	0	0	0	0	0	1	38	146	6	5		5	ABCA8	17	66871835	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3317215	66871835	14323375	1130	4492										
ABCA8	0	genome.wustl.edu	37	chr17	66872767	66872767	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caacaccaagccctgcccgtAcctttctctttattccctct	3	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	66872767	66872767	A	C	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	splice_site	c.4275+2	e32+2	0.993	-	-	-	no_errors	ABCA8	HGNC	ENSG00000141338	173	0	0	178	21	10.4	-	-	-	C	66872767	A	C	66872767	5	2	67	1	0	0	0	0	0	0	1	0	38	405	14	5	616	5	ABCA8	17	66872767	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	932	66872767	14322443	1131	4493										
SOX9	0	genome.wustl.edu	37	chr17	70120376	70120376	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccacgcggcaggccagggcAccggcctctactccaccttc	11	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	70120376	70120376	A	C	SNP	SOX9	ENST00000245479	human	ensembl	69_37n	1	known	missense	c.1378	p.T460P	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	127	1	0.77	81	30	26.79	-	-	-	C	70120376	A	C	70120376	3	2	67	1	0	0	0	0	1	0	0	0	15047	159	6	5	1388	5	SOX9	17	70120376	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3247609	70120376	11074834	1132	4494										
SDK2	0	genome.wustl.edu	37	chr17	71346887	71346887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccgaccagggcaatgaccAccaagaaccaccactcctca	8	17	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	71346887	71346887	A	C	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.5801	p.V1934G	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	179	1	0.55	69	16	18.6	-	-	-	C	71346887	A	C	71346887	3	2	67	1	0	0	0	0	1	0	0	0	14057	159	6	5	733	5	SDK2	17	71346887	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1226511	71346887	9848323	1133	4495										
KIF19	0	genome.wustl.edu	37	chr17	72338120	72338120	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcctttgacttcaccgccAcccaggtgagggagggcctg	14	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	72338120	72338120	A	C	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	missense	c.226	p.T76P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	65	0	0	38	12	24	-	-	-	C	72338120	A	C	72338120	3	2	67	1	0	0	0	0	1	0	0	0	8334	159	6	5	236	5	KIF19	17	72338120	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	991233	72338120	8857090	1134	4496										
CD300E	0	genome.wustl.edu	37	chr17	72613436	72613436	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacgcggccattcctctccAccttctcttctcccttggtc	5	19	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	72613436	72613436	A	C	SNP	CD300E	ENST00000426295	human	ensembl	69_37n	-1	known	missense	c.332	p.V111G	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300E	HGNC	ENSG00000186407	158	1	0.63	116	19	13.97	-	-	-	C	72613436	A	C	72613436	3	2	67	1	0	0	0	0	1	0	0	0	3027	159	6	5	420	5	CD300E	17	72613436	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	275316	72613436	8581774	1135	4497										
TMEM104	0	genome.wustl.edu	37	chr17	72832545	72832545	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgtcgtgtttcccaccatcAccctggtgccgcctgtgctg	11	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	72832545	72832545	A	C	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	missense	c.1210	p.T404P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	52	0	0	16	7	29.17	-	-	-	C	72832545	A	C	72832545	3	2	67	1	0	0	0	0	1	0	0	0	16113	159	6	5	1244	5	TMEM104	17	72832545	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	219109	72832545	8362665	1136	4498										
UNK	0	genome.wustl.edu	37	chr17	73812901	73812901	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcagctgtgtccagccccAcccagccaggtcctgtcctg	9	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	73812901	73812901	A	C	SNP	UNK	ENST00000293218	human	ensembl	69_37n	1	known	missense	c.1240	p.T414P	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478	71	0	0	57	14	19.72	-	-	-	C	73812901	A	C	73812901	3	2	67	1	0	0	0	0	1	0	0	0	17097	159	6	5	1274	5	UNK	17	73812901	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	980356	73812901	7382309	1137	4499										
UNK	0	genome.wustl.edu	37	chr17	73813573	73813573	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcgagagggaagaccaggTgggagccgagtacctgaaaa	15	8	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	73813573	73813573	T	G	SNP	UNK	ENST00000293218	human	ensembl	69_37n	1	known	missense	c.1499	p.V500G	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478	108	0	0	97	28	22.22	-	-	-	G	73813573	T	G	73813573	3	3	67	1	0	0	0	0	1	0	0	0	17097	1696	59	5	1537	5	UNK	17	73813573	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	672	73813573	7381637	1138	4500										
WBP2	0	genome.wustl.edu	37	chr17	73842839	73842839	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgggtcttcttatcttccggTgggtagtagggaggtggcgg	18	6	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	73842839	73842839	T	G	SNP	WBP2	ENST00000591831	human	ensembl	69_37n	-1	known	missense	c.685	p.T229P	0.993	NULL	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2	HGNC	ENSG00000132471	262	1	0.37	252	29	10.32	-	-	-	G	73842839	T	G	73842839	3	3	67	1	0	0	0	0	1	0	0	0	17356	1683	59	5	27	5	WBP2	17	73842839	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	29266	73842839	7352371	1139	4501										
EVPL	0	genome.wustl.edu	37	chr17	74005543	74005543	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtcacctccttgtactccAccgtgggcttctgggcccgc	12	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	74005543	74005543	A	C	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.3743	p.V1248G	1.000	superfamily_Ferritin/RR-like	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	64	0	0	28	8	21.62	-	-	-	C	74005543	A	C	74005543	3	2	67	1	0	0	0	0	1	0	0	0	5329	159	6	5	2362	5	EVPL	17	74005543	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	162704	74005543	7189667	1140	4502										
RHBDF2	0	genome.wustl.edu	37	chr17	74471120	74471120	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacccgactcaccagctgggTggtgacgtgctgggcaaagc	15	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	74471120	74471120	T	G	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.1306	p.T436P	0.996	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	72	0	0	30	10	25	-	-	-	G	74471120	T	G	74471120	3	3	67	1	0	0	0	0	1	0	0	0	13404	1696	59	5	1304	5	RHBDF2	17	74471120	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	465577	74471120	6724090	1141	4503										
SEC14L1	0	genome.wustl.edu	37	chr17	75209487	75209487	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccagcagccttccccgggTggacgacgtgcttgcgtccc	13	17	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	75209487	75209487	T	G	SNP	SEC14L1	ENST00000392476	human	ensembl	69_37n	1	known	missense	c.1955	p.V652G	1.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657	60	0	0	39	8	17.02	-	-	-	G	75209487	T	G	75209487	3	3	67	1	0	0	0	0	1	0	0	0	14069	1696	59	5	2009	5	SEC14L1	17	75209487	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	738367	75209487	5985723	1142	4504										
TNRC6C	0	genome.wustl.edu	37	chr17	76046343	76046343	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcaagtgaaggaagtagTgatggttctggcaaccacaa	12	7	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	76046343	76046343	T	G	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.1200	p.S400R	0.032	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	54	0	0	36	5	12.2	-	-	-	G	76046343	T	G	76046343	3	3	67	1	0	0	0	0	1	0	0	0	16437	1693	59	5	1202	5	TNRC6C	17	76046343	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	836856	76046343	5148867	1143	4505										
TNRC6C	0	genome.wustl.edu	37	chr17	76094508	76094508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtctcatgaactatggaaggTgcccagaaacagtactgcac	10	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	76094508	76094508	T	G	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.4499	p.V1500G	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	118	1	0.84	70	11	13.58	-	-	-	G	76094508	T	G	76094508	3	3	67	1	0	0	0	0	1	0	0	0	16437	1696	59	5	4570	5	TNRC6C	17	76094508	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	48165	76094508	5100702	1144	4506										
AFMID	0	genome.wustl.edu	37	chr17	76201794	76201794	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttcgactcccccgaattccAccgacagtcctgggagtttt	9	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	76201794	76201794	A	C	SNP	AFMID	ENST00000327898	human	ensembl	69_37n	1	known	missense	c.755	p.H252P	1.000	NULL	pfam_AB_hydrolase_3	-	no_errors	AFMID	HGNC	ENSG00000183077	108	1	0.89	69	15	17.86	-	-	-	C	76201794	A	C	76201794	3	2	67	1	0	0	0	0	1	0	0	0	362	159	6	5	789	5	AFMID	17	76201794	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	107286	76201794	4993416	1145	4507										
ENGASE	0	genome.wustl.edu	37	chr17	77079917	77079917	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttggagaacacaggctgggAggggatggccggggctgggt	21	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	77079917	77079917	A	G	SNP	ENGASE	ENST00000579016	human	ensembl	69_37n	1	known	silent	c.1326	p.G442	0.000	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	75	0	0	29	12	29.27	-	-	-	G	77079917	A	G	77079917	2	3	67	1	0	0	0	0	0	0	0	1	5155	291	11	5		5	ENGASE	17	77079917	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	878123	77079917	4115293	1146	4508										
CBX8	0	genome.wustl.edu	37	chr17	77768691	77768691	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagccatgtcggacccgggTgccattgggatctagggcac	15	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	77768691	77768691	T	G	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.913	p.T305P	0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	36	0	0	28	5	15.15	-	-	-	G	77768691	T	G	77768691	3	3	67	1	0	0	0	0	1	0	0	0	2749	1696	59	5	235	5	CBX8	17	77768691	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	688774	77768691	3426519	1147	4509										
SLC26A11	0	genome.wustl.edu	37	chr17	78219000	78219000	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgcctcctccccaggtctcAccaacatgttgggctccctc	7	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	78219000	78219000	A	C	SNP	SLC26A11	ENST00000361193	human	ensembl	69_37n	1	known	missense	c.1042	p.T348P	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045	157	1	0.63	232	36	13.38	-	-	-	C	78219000	A	C	78219000	3	2	67	1	0	0	0	0	1	0	0	0	14605	159	6	5	1076	5	SLC26A11	17	78219000	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	450309	78219000	2976210	1148	4510										
RNF213	0	genome.wustl.edu	37	chr17	78291004	78291004	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggtctggaggcggctggTggaaatccaattccccgcgg	16	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	78291004	78291004	T	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.2828	p.V943G	0.988	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	217	2	0.91	146	29	16.57	-	-	-	G	78291004	T	G	78291004	3	3	67	1	0	0	0	0	1	0	0	0	13563	1696	59	5	3037	5	RNF213	17	78291004	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	72004	78291004	2904206	1149	4511										
RNF213	0	genome.wustl.edu	37	chr17	78325568	78325568	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catcacaaaactgtcccgggTgggaagaggaacagcctatg	12	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	78325568	78325568	T	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.10268	p.V3423G	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	237	1	0.42	156	26	14.29	-	-	-	G	78325568	T	G	78325568	3	3	67	1	0	0	0	0	1	0	0	0	13563	1696	59	5	10709	5	RNF213	17	78325568	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	34564	78325568	2869642	1150	4512										
AZI1	0	genome.wustl.edu	37	chr17	79180991	79180991	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggcaggcctctttttcccActggggctgccctcgaagag	12	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	79180991	79180991	A	C	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	missense	c.321	p.S107R	0.000	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	99	1	1	77	16	17.02	-	-	-	C	79180991	A	C	79180991	3	2	67	1	0	0	0	0	1	0	0	0	1244	156	6	5	3013	5	AZI1	17	79180991	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	855423	79180991	2014219	1151	4513										
FASN	0	genome.wustl.edu	37	chr17	80042179	80042179	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggccaggcccttggcaggcAccagtcccatcacacgcttg	11	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	80042179	80042179	A	C	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.4850	p.V1617G	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	78	0	0	34	5	12.82	-	-	-	C	80042179	A	C	80042179	3	2	67	1	0	0	0	0	1	0	0	0	5729	159	6	5	2749	5	FASN	17	80042179	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	861188	80042179	1153031	1152	4514										
CCDC57	0	genome.wustl.edu	37	chr17	80085646	80085646	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctccacatgtcctggagggTgccactggcaaaggaggagg	15	11	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	80085646	80085646	T	G	SNP	CCDC57	ENST00000389641	human	ensembl	69_37n	-1	known	missense	c.2488	p.T830P	0.037	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155	132	1	0.75	111	28	20.14	-	-	-	G	80085646	T	G	80085646	3	3	67	1	0	0	0	0	1	0	0	0	2854	1696	59	5	270	5	CCDC57	17	80085646	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	43467	80085646	1109564	1153	4515										
NARF	0	genome.wustl.edu	37	chr17	80430544	80430544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcacagtgaggaggaacgcAccctgcccatgctgacctct	11	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	80430544	80430544	A	C	SNP	NARF	ENST00000309794	human	ensembl	69_37n	1	known	missense	c.490	p.T164P	0.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562	115	1	0.85	86	19	17.92	-	-	-	C	80430544	A	C	80430544	3	2	67	1	0	0	0	0	1	0	0	0	10239	159	6	5	508	5	NARF	17	80430544	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	344898	80430544	764666	1154	4516										
FN3KRP	0	genome.wustl.edu	37	chr17	80684372	80684372	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggtgaatgactggcaggAggactgggtcgtgttctatg	17	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	80684372	80684372	A	G	SNP	FN3KRP	ENST00000269373	human	ensembl	69_37n	1	known	missense	c.485	p.E162G	0.878	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	160	0	0	173	29	14.36	-	-	-	G	80684372	A	G	80684372	3	3	67	1	0	0	0	0	1	0	0	0	6010	304	11	5	503	5	FN3KRP	17	80684372	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	253828	80684372	510838	1155	4517										
TBCD	0	genome.wustl.edu	37	chr17	80858574	80858574	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacgcagccaatgatagaccAcctggttaccatgaagatca	8	12	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	80858574	80858574	A	C	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.1697	p.H566P	0.998	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	396	2	0.5	364	42	10.34	-	-	-	C	80858574	A	C	80858574	3	2	67	1	0	0	0	0	1	0	0	0	15728	159	6	5	1767	5	TBCD	17	80858574	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	174202	80858574	336636	1156	4518										
METRNL	0	genome.wustl.edu	37	chr17	81042855	81042855	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggaaggaggtggagcaggTgtatctgcgctgtgcggcgg	20	7	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	17	81042855	81042855	T	G	SNP	METRNL	ENST00000320095	human	ensembl	69_37n	1	known	missense	c.212	p.V71G	1.000	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845	135	1	0.73	72	14	16.09	-	-	-	G	81042855	T	G	81042855	3	3	67	1	0	0	0	0	1	0	0	0	9560	1696	59	5	218	5	METRNL	17	81042855	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	184281	81042855	152355	1157	4519										
L3MBTL4	0	genome.wustl.edu	37	chr18	6171877	6171877	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catcacaccatccgatcgggTggatatcagggctgtctgcc	11	13	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	6171877	6171877	T	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	missense	c.1046	p.H349P	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	154	1	0.64	93	17	15.45	-	-	-	G	6171877	T	G	6171877	3	3	67	1	0	0	0	0	1	0	0	0	8648	1696	59	5	857	5	L3MBTL4	18	6171877	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		6171877	71905371	1158	4520										
TUBB6	0	genome.wustl.edu	37	chr18	12310972	12310972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtgcccagggccgccctggTggacttagagccaggcacca	14	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	12310972	12310972	T	G	SNP	TUBB6	ENST00000317702	human	ensembl	69_37n	1	known	missense	c.197	p.V66G	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014	194	0	0	224	30	11.76	-	-	-	G	12310972	T	G	12310972	3	3	67	1	0	0	0	0	1	0	0	0	16857	1696	59	5	207	5	TUBB6	18	12310972	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	6139095	12310972	65766276	1159	4521										
AFG3L2	0	genome.wustl.edu	37	chr18	12353015	12353015	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accactcaccatccatctccAccagcagctggttgagtgtg	8	15	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	12353015	12353015	A	C	SNP	AFG3L2	ENST00000269143	human	ensembl	69_37n	-1	known	missense	c.1307	p.V436G	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385	562	3	0.53	315	40	11.24	-	-	-	C	12353015	A	C	12353015	3	2	67	1	0	0	0	0	1	0	0	0	360	159	6	5	1118	5	AFG3L2	18	12353015	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42043	12353015	65724233	1160	4522										
AFG3L2	0	genome.wustl.edu	37	chr18	12367317	12367317	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagaatcatctttcttgccAcctcgttttccaccgccacc	5	16	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	12367317	12367317	A	C	SNP	AFG3L2	ENST00000269143	human	ensembl	69_37n	-1	known	silent	c.357	p.G119	0.865	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385	187	1	0.53	144	34	18.99	-	-	-	C	12367317	A	C	12367317	2	2	67	1	0	0	0	0	0	0	0	1	360	146	6	5		5	AFG3L2	18	12367317	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	14302	12367317	65709931	1161	4523										
LAMA3	0	genome.wustl.edu	37	chr18	21533030	21533030	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctggacagatccccttcccAcctgccagcactcaagagcc	8	18	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	21533030	21533030	A	C	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	silent	c.9813	p.P3271	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	168	1	0.59	113	26	18.57	-	-	-	C	21533030	A	C	21533030	2	2	67	1	0	0	0	0	0	0	0	1	8661	146	6	5		5	LAMA3	18	21533030	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9165713	21533030	56544218	1162	4524										
FAM59A	0	genome.wustl.edu	37	chr18	29850214	29850214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaagaatagtaggacaaggTggggctgggagagcgagtct	18	4	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	29850214	29850214	T	G	SNP	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	missense	c.1699	p.T567P	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	296	2	0.67	239	36	13.04	-	-	-	G	29850214	T	G	29850214	3	3	67	1	0	0	0	0	1	0	0	0	5637	1696	59	5	936	5	FAM59A	18	29850214	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8317184	29850214	48227034	1163	4525										
ELP2	0	genome.wustl.edu	37	chr18	33750147	33750147	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcgtctgcccagtgctccAcccttctcaacggtcagtct	8	17	4	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	33750147	33750147	A	C	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	missense	c.2198	p.H733P	0.020	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	208	1	0.48	130	18	12.16	-	-	-	C	33750147	A	C	33750147	3	2	67	1	0	0	0	0	1	0	0	0	5117	159	6	5	2276	5	ELP2	18	33750147	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3899933	33750147	44327101	1164	4526										
SLC14A1	0	genome.wustl.edu	37	chr18	43314276	43314276	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctctatggctacaatgccAccctggtgggagtactcatg	12	11	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	43314276	43314276	A	C	SNP	SLC14A1	ENST00000415427	human	ensembl	69_37n	1	known	missense	c.547	p.T183P	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469	246	0	0	269	31	10.33	-	-	-	C	43314276	A	C	43314276	3	2	67	1	0	0	0	0	1	0	0	0	14485	159	6	5	561	5	SLC14A1	18	43314276	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9564129	43314276	34762972	1165	4527										
TCEB3C	0	genome.wustl.edu	37	chr18	44555106	44555106	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtacagctgatcgggcgtccAcccttccagaacgggttcaa	11	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	44555106	44555106	A	C	SNP	TCEB3C	ENST00000330682	human	ensembl	69_37n	-1	known	missense	c.1108	p.W370G	0.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3C	HGNC	ENSG00000183791	1401	6	0.42	1136	130	10.23	-	-	-	C	44555106	A	C	44555106	3	2	67	1	0	0	0	0	1	0	0	0	15778	159	6	5	2179	5	TCEB3C	18	44555106	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1240830	44555106	33522142	1166	4528										
KATNAL2	0	genome.wustl.edu	37	chr18	44589415	44589415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagtgaacttgccttgaacAccttcgaccataatccagac	6	14	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	44589415	44589415	A	C	SNP	KATNAL2	ENST00000245121	human	ensembl	69_37n	1	known	missense	c.406	p.T136P	0.999	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216	139	0	0	105	20	16	-	-	-	C	44589415	A	C	44589415	3	2	67	1	0	0	0	0	1	0	0	0	8040	159	6	5	424	5	KATNAL2	18	44589415	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	34309	44589415	33487833	1167	4529										
MYO5B	0	genome.wustl.edu	37	chr18	47379868	47379868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgctgaacgccgaattccAcctgggcctctggggagagc	13	14	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	47379868	47379868	A	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.4172	p.V1391G	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	161	1	0.61	107	13	10.57	-	-	-	C	47379868	A	C	47379868	3	2	67	1	0	0	0	0	1	0	0	0	10151	159	6	5	1414	5	MYO5B	18	47379868	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2790453	47379868	30697380	1168	4530										
ALPK2	0	genome.wustl.edu	37	chr18	56246892	56246892	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgaggaaatgctcacacccAcccaggcaatgctcaccgaa	8	15	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	56246892	56246892	A	C	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	silent	c.1116	p.G372	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	254	1	0.39	176	20	10.05	-	-	-	C	56246892	A	C	56246892	2	2	67	1	0	0	0	0	0	0	0	1	545	146	6	5		5	ALPK2	18	56246892	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8867024	56246892	21830356	1169	4531										
CNDP2	0	genome.wustl.edu	37	chr18	72179684	72179684	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcctttgtttccgtgcaggTggagtgcagcaacaaagacc	13	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	72179684	72179684	T	G	SNP	CNDP2	ENST00000324262	human	ensembl	69_37n	1	known	missense	c.659	p.V220G	1.000	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313	216	2	0.92	171	28	14.07	-	-	-	G	72179684	T	G	72179684	3	3	67	1	0	0	0	0	1	0	0	0	3624	1710	59	5	681	5	CNDP2	18	72179684	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	15932792	72179684	5897564	1170	4532										
ZADH2	0	genome.wustl.edu	37	chr18	72914130	72914130	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tactcagcaaaagaaccaggTgccatgtaagccacagcttg	9	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	72914130	72914130	T	G	SNP	ZADH2	ENST00000322342	human	ensembl	69_37n	-1	known	silent	c.375	p.A125	0.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011	85	0	0	47	9	15.79	-	-	-	G	72914130	T	G	72914130	2	3	67	1	0	0	0	0	0	0	0	1	17608	1683	59	5		5	ZADH2	18	72914130	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	734446	72914130	5163118	1171	4533										
ZNF516	0	genome.wustl.edu	37	chr18	74074435	74074435	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccgttacggggacctggggTgcgtcggaaacacgccttta	15	11	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	74074435	74074435	T	G	SNP	ZNF516	ENST00000524431	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF516	HGNC	ENSG00000101493	120	1	0.83	77	28	26.67	-	-	-	G	74074435	T	G	74074435	1	3	67	0	1	0	0	0	0	0	0	0	18056	1711	59	5		5	ZNF516	18	74074435	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1160305	74074435	4002813	1172	4534										
GALR1	0	genome.wustl.edu	37	chr18	74980572	74980572	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agttctggtggtggttgtggTgtttggaatctcctggctgc	16	6	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	74980572	74980572	T	G	SNP	GALR1	ENST00000299727	human	ensembl	69_37n	1	known	missense	c.764	p.V255G	0.111	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Galnin_1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573	112	0	0	107	18	14.4	-	-	-	G	74980572	T	G	74980572	3	3	67	1	0	0	0	0	1	0	0	0	6277	1696	59	5	774	5	GALR1	18	74980572	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	906137	74980572	3096676	1173	4535										
NFATC1	0	genome.wustl.edu	37	chr18	77208908	77208908	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggaagaccgtgtccaccAccagccacgaggccatcctc	10	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	18	77208908	77208908	A	C	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	missense	c.1513	p.T505P	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	58	0	0	47	13	21.67	-	-	-	C	77208908	A	C	77208908	3	2	67	1	0	0	0	0	1	0	0	0	10433	159	6	5	1619	5	NFATC1	18	77208908	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2228336	77208908	868340	1174	4536										
THEG	0	genome.wustl.edu	37	chr19	367128	367128	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggttttggcacggggtcccActcttccaagagggtggctg	16	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	367128	367128	A	C	SNP	THEG	ENST00000342640	human	ensembl	69_37n	-1	known	missense	c.850	p.W284G	0.995	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549	148	1	0.67	178	31	14.76	-	-	-	C	367128	A	C	367128	3	2	67	1	0	0	0	0	1	0	0	0	15952	159	6	5	297	5	THEG	19	367128	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		367128	58761855	1175	4537										
HCN2	0	genome.wustl.edu	37	chr19	610269	610269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctccccacagtacaagcaggTggagcagtacatgtccttcc	9	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	610269	610269	T	G	SNP	HCN2	ENST00000251287	human	ensembl	69_37n	1	known	missense	c.1448	p.V483G	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	81	0	0	54	12	17.91	-	-	-	G	610269	T	G	610269	3	3	67	1	0	0	0	0	1	0	0	0	7048	1696	59	5	1466	5	HCN2	19	610269	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	243141	610269	58518714	1176	4538										
LPPR3	0	genome.wustl.edu	37	chr19	815778	815778	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtcatagcactggaagcccAccttggccggcttgaagagg	14	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	815778	815778	A	C	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	missense	c.149	p.V50G	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	63	0	0	41	7	14.58	-	-	-	C	815778	A	C	815778	3	2	67	1	0	0	0	0	1	0	0	0	8992	159	6	5	2111	5	LPPR3	19	815778	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	205509	815778	58313205	1177	4539										
ABCA7	0	genome.wustl.edu	37	chr19	1057019	1057019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgagtcacccgagccaagcAcctgcagctcatggggggcc	14	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	1057019	1057019	A	C	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.4700	p.H1567P	1.000	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	120	1	0.82	84	19	18.45	-	-	-	C	1057019	A	C	1057019	3	2	67	1	0	0	0	0	1	0	0	0	37	159	6	5	4830	5	ABCA7	19	1057019	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	241241	1057019	58071964	1178	4540										
LMNB2	0	genome.wustl.edu	37	chr19	2432478	2432478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgtaggcgatctcctcccccTccaagacctgcctcttgatt	7	16	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	2432478	2432478	T	C	SNP	LMNB2	ENST00000325327	human	ensembl	69_37n	-1	known	missense	c.1526	p.E509G	0.017	pfam_Lamin_tail_dom	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	133	0	0	164	21	11.23	-	-	-	C	2432478	T	C	2432478	3	2	67	1	0	0	0	0	1	0	0	0	8906	1551	54	5	352	5	LMNB2	19	2432478	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1375459	2432478	56696505	1179	4541										
TNFAIP8L1	0	genome.wustl.edu	37	chr19	4651973	4651973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagtggtggccgtgctggTggatgacaccagcagtgagg	19	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	4651973	4651973	T	G	SNP	TNFAIP8L1	ENST00000327473	human	ensembl	69_37n	1	known	missense	c.92	p.V31G	0.570	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8L1	HGNC	ENSG00000185361	64	0	0	35	11	23.91	-	-	-	G	4651973	T	G	4651973	3	3	67	1	0	0	0	0	1	0	0	0	16372	1696	59	5	94	5	TNFAIP8L1	19	4651973	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2219495	4651973	54477010	1180	4542										
PTPRS	0	genome.wustl.edu	37	chr19	5244463	5244463	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtggctgtgttctcagtcAccatgggagtcccgggagct	15	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	5244463	5244463	A	C	SNP	PTPRS	ENST00000372412	human	ensembl	69_37n	-1	known	missense	c.1022	p.V341G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like	-	no_errors	PTPRS	HGNC	ENSG00000105426	273	2	0.71	158	22	12.22	-	-	-	C	5244463	A	C	5244463	3	2	67	1	0	0	0	0	1	0	0	0	12894	159	6	5	4939	5	PTPRS	19	5244463	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	592490	5244463	53884520	1181	4543										
LONP1	0	genome.wustl.edu	37	chr19	5693719	5693719	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccaggctgccatccttgtcAcccttggcatccttgtcctg	8	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	5693719	5693719	A	C	SNP	LONP1	ENST00000360614	human	ensembl	69_37n	-1	known	silent	c.2382	p.G794	0.502	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP1	HGNC	ENSG00000196365	102	1	0.94	97	26	21.14	-	-	-	C	5693719	A	C	5693719	2	2	67	1	0	0	0	0	0	0	0	1	8958	146	6	5		5	LONP1	19	5693719	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	449256	5693719	53435264	1182	4544										
LONP1	0	genome.wustl.edu	37	chr19	5700849	5700849	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtagtggtcttcctccagcActgcctgtgcccgcgccagg	12	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	5700849	5700849	A	C	SNP	LONP1	ENST00000360614	human	ensembl	69_37n	-1	known	missense	c.1457	p.V486G	1.000	pfam_Prk_AAA_dom,tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP1	HGNC	ENSG00000196365	91	0	0	95	15	13.64	-	-	-	C	5700849	A	C	5700849	3	2	67	1	0	0	0	0	1	0	0	0	8958	159	6	5	1462	5	LONP1	19	5700849	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	7130	5700849	53428134	1183	4545										
FUT6	0	genome.wustl.edu	37	chr19	5831962	5831962	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggctctggtagtagcgcAccctggcggagtttggcccc	15	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	5831962	5831962	A	C	SNP	FUT6	ENST00000592563	human	ensembl	69_37n	-1	known	missense	c.617	p.V206G	0.345	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT6	HGNC	ENSG00000156413	112	0	0	63	13	17.11	-	-	-	C	5831962	A	C	5831962	3	2	67	1	0	0	0	0	1	0	0	0	6157	159	6	5	466	5	FUT6	19	5831962	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	131113	5831962	53297021	1184	4546										
DENND1C	0	genome.wustl.edu	37	chr19	6478861	6478861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacctcgaaccaaggcaggTggctgtggagagaggagaca	15	9	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	6478861	6478861	T	G	SNP	DENND1C	ENST00000381480	human	ensembl	69_37n	-1	known	missense	c.299	p.H100P	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744	110	1	0.89	83	14	14.43	-	-	-	G	6478861	T	G	6478861	3	3	67	1	0	0	0	0	1	0	0	0	4464	1696	59	5	2178	5	DENND1C	19	6478861	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	646899	6478861	52650122	1185	4547										
GPR108	0	genome.wustl.edu	37	chr19	6735968	6735968	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccggctgagactgaaccccAcctggtgggtggaaaaaaaa	12	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	6735968	6735968	A	C	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	missense	c.242	p.V81G	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	118	0	0	79	16	16.67	-	-	-	C	6735968	A	C	6735968	3	2	67	1	0	0	0	0	1	0	0	0	6674	173	6	5	1453	5	GPR108	19	6735968	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	257107	6735968	52393015	1186	4548										
VAV1	0	genome.wustl.edu	37	chr19	6828887	6828887	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaactcaagatcacctcggTggaacggcgctccaagatgg	13	11	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	6828887	6828887	T	G	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	missense	c.1241	p.V414G	0.026	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	69	0	0	37	6	13.95	-	-	-	G	6828887	T	G	6828887	3	3	67	1	0	0	0	0	1	0	0	0	17228	1696	59	5	1291	5	VAV1	19	6828887	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	92919	6828887	52300096	1187	4549										
ZNF358	0	genome.wustl.edu	37	chr19	7585581	7585581	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctccccggctccagatccAcccccagccctactcctgtg	6	23	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	7585581	7585581	A	C	SNP	ZNF358	ENST00000394341	human	ensembl	69_37n	1	known	missense	c.1453	p.T485P	0.108	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816	56	0	0	47	13	21.67	-	-	-	C	7585581	A	C	7585581	3	2	67	1	0	0	0	0	1	0	0	0	17963	159	6	5	1455	5	ZNF358	19	7585581	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	756694	7585581	51543402	1188	4550										
MCOLN1	0	genome.wustl.edu	37	chr19	7591379	7591379	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgacattccgggaagagaacAccatcgccttccgacacctc	8	15	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	7591379	7591379	A	C	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.292	p.T98P	1.000	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	122	0	0	154	21	12	-	-	-	C	7591379	A	C	7591379	3	2	67	1	0	0	0	0	1	0	0	0	9466	159	6	5	302	5	MCOLN1	19	7591379	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5798	7591379	51537604	1189	4551										
LRRC8E	0	genome.wustl.edu	37	chr19	7964327	7964327	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcaaccacaccaaggcccAcctcttctccaagctggcct	6	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	7964327	7964327	A	C	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	1	known	missense	c.920	p.H307P	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	129	1	0.75	103	21	16.94	-	-	-	C	7964327	A	C	7964327	3	2	67	1	0	0	0	0	1	0	0	0	9091	159	6	5	926	5	LRRC8E	19	7964327	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	372948	7964327	51164656	1190	4552										
ELAVL1	0	genome.wustl.edu	37	chr19	8028615	8028615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggttgtagatgaaaatgcAccagccggaggaggcgtttc	14	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	8028615	8028615	A	C	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	missense	c.814	p.C272G	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	93	0	0	26	12	31.58	-	-	-	C	8028615	A	C	8028615	3	2	67	1	0	0	0	0	1	0	0	0	5086	159	6	5	251	5	ELAVL1	19	8028615	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	64288	8028615	51100368	1191	4553										
HNRNPM	0	genome.wustl.edu	37	chr19	8553625	8553625	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agaatgggaagtccaaggggTgtggcgtggttaagttcgag	18	4	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	8553625	8553625	T	G	SNP	HNRNPM	ENST00000325495	human	ensembl	69_37n	1	known	missense	c.2080	p.C694G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783	259	1	0.38	133	27	16.88	-	-	-	G	8553625	T	G	8553625	3	3	67	1	0	0	0	0	1	0	0	0	7322	1696	59	5	2142	5	HNRNPM	19	8553625	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	525010	8553625	50575358	1192	4554										
OR2Z1	0	genome.wustl.edu	37	chr19	8841877	8841877	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctccatccagacctccatcAccctgcattttccctactgt	3	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	8841877	8841877	A	C	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	missense	c.487	p.T163P	0.466	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	190	0	0	201	28	12.12	-	-	-	C	8841877	A	C	8841877	3	2	67	1	0	0	0	0	1	0	0	0	11109	159	6	5	489	5	OR2Z1	19	8841877	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	288252	8841877	50287106	1193	4555										
MUC16	0	genome.wustl.edu	37	chr19	8959700	8959700	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttccttcttccgccggcgggTggtcacctatgagggtgagg	15	11	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	8959700	8959700	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.43432	p.T14478P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	138	1	0.71	147	32	17.88	-	-	-	G	8959700	T	G	8959700	3	3	67	1	0	0	0	0	1	0	0	0	10045	1696	59	5	95	5	MUC16	19	8959700	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	117823	8959700	50169283	1194	4556										
MUC16	0	genome.wustl.edu	37	chr19	8976743	8976743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggaccagggtctcaccaggTgctgaaggaccccctcggtg	15	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	8976743	8976743	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.42323	p.H14108P	0.000	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	256	1	0.39	207	27	11.54	-	-	-	G	8976743	T	G	8976743	3	3	67	1	0	0	0	0	1	0	0	0	10045	1696	59	5	1248	5	MUC16	19	8976743	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	17043	8976743	50152240	1195	4557										
MUC16	0	genome.wustl.edu	37	chr19	9046759	9046759	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actacccctggtatactgggTgggatggttgtagttggaac	14	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	9046759	9046759	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.34872	p.P11624	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	244	1	0.4	176	25	12.44	-	-	-	G	9046759	T	G	9046759	2	3	67	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9046759	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	70016	9046759	50082224	1196	4558										
MUC16	0	genome.wustl.edu	37	chr19	9071635	9071635	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcaggaggacttgcttgggTggtgatcgtcatttctgcag	14	8	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	9071635	9071635	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.15811	p.T5271P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	305	1	0.33	272	38	12.14	-	-	-	G	9071635	T	G	9071635	3	3	67	1	0	0	0	0	1	0	0	0	10045	1696	59	5	28040	5	MUC16	19	9071635	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24876	9071635	50057348	1197	4559										
OR7D2	0	genome.wustl.edu	37	chr19	9296873	9296873	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatgatcatcatgaacccccAcctctgtggcctcctggttt	7	14	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	9296873	9296873	A	C	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.416	p.H139P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	140	1	0.7	185	31	14.22	-	-	-	C	9296873	A	C	9296873	3	2	67	1	0	0	0	0	1	0	0	0	11292	159	6	5	418	5	OR7D2	19	9296873	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	225238	9296873	49832110	1198	4560										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10218532	10218532	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaccttccaggtcaagaaggTgagaggggtggaggtggtac	18	6	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	10218532	10218532	T	G	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	splice_site	c.342+2	e4+2	0.992	-	-	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	213	2	0.93	202	26	11.4	-	-	-	G	10218532	T	G	10218532	5	3	67	1	0	0	0	0	0	0	1	0	12362	1710	59	5	358	5	PPAN-P2RY11	19	10218532	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	921659	10218532	48910451	1199	4561										
CARM1	0	genome.wustl.edu	37	chr19	11031537	11031537	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcacaacgccctcacccccAcccggctcccactacacatc	5	23	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	11031537	11031537	A	C	SNP	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	silent	c.1452	p.P484	0.574	NULL	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	114	0	0	80	15	15.79	-	-	-	C	11031537	A	C	11031537	2	2	67	1	0	0	0	0	0	0	0	1	2680	146	6	5		5	CARM1	19	11031537	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	813005	11031537	48097446	1200	4562										
RGL3	0	genome.wustl.edu	37	chr19	11527477	11527477	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccagttggggttctagggTggagaatacggaggttatgg	18	5	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	11527477	11527477	T	G	SNP	RGL3	ENST00000563436	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RGL3	HGNC	ENSG00000205517	99	1	1	58	17	22.67	-	-	-	G	11527477	T	G	11527477	1	3	67	0	1	0	0	0	0	0	0	0	13361	1711	59	5		5	RGL3	19	11527477	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	495940	11527477	47601506	1201	4563										
DNASE2	0	genome.wustl.edu	37	chr19	12989584	12989584	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatgcagcagaggaggccggTggagggaagttaggtacact	17	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	12989584	12989584	T	G	SNP	DNASE2	ENST00000222219	human	ensembl	69_37n	-1	known	silent	c.411	p.P137	0.032	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612	137	0	0	58	18	23.38	-	-	-	G	12989584	T	G	12989584	2	3	67	1	0	0	0	0	0	0	0	1	4699	1683	59	5		5	DNASE2	19	12989584	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1462107	12989584	46139399	1202	4564										
RAD23A	0	genome.wustl.edu	37	chr19	13059101	13059101	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcaggcatgtcccatcccccAcctgccgccagagaggacaa	9	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	13059101	13059101	A	C	SNP	RAD23A	ENST00000586534	human	ensembl	69_37n	1	known	silent	c.345	p.P115	0.002	tigrfam_Rad23	pfam_XPC-bd,pfam_UBA/transl_elong_EF1B_N,pfam_Ubiquitin,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,prints_Rad23,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	-	no_errors	RAD23A	HGNC	ENSG00000179262	144	1	0.68	64	22	25.29	-	-	-	C	13059101	A	C	13059101	2	2	67	1	0	0	0	0	0	0	0	1	13065	146	6	5		5	RAD23A	19	13059101	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	69517	13059101	46069882	1203	4565										
DAND5	0	genome.wustl.edu	37	chr19	13084301	13084301	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctggctcggaccccaccccActagtcctgtgcaacagctg	9	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	13084301	13084301	A	C	SNP	DAND5	ENST00000317060	human	ensembl	69_37n	1	known	silent	c.423	p.P141	0.000	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284	172	0	0	175	21	10.66	-	-	-	C	13084301	A	C	13084301	2	2	67	1	0	0	0	0	0	0	0	1	4262	146	6	5		5	DAND5	19	13084301	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	25200	13084301	46044682	1204	4566										
NANOS3	0	genome.wustl.edu	37	chr19	13991312	13991312	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgctctccctccatgtccAcctaggaggctgcctacacc	7	19	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	13991312	13991312	A	C	SNP	NANOS3	ENST00000339133	human	ensembl	69_37n	1	known	missense	c.574	p.T192P	0.056	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556	97	0	0	100	18	15.13	-	-	-	C	13991312	A	C	13991312	3	2	67	1	0	0	0	0	1	0	0	0	10225	159	6	5	580	5	NANOS3	19	13991312	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	907011	13991312	45137671	1205	4567										
C19orf57	0	genome.wustl.edu	37	chr19	14001111	14001111	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcatcaggctgagaatccccActgccgggcaccgcctgcac	10	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14001111	14001111	A	C	SNP	C19orf57	ENST00000454313	human	ensembl	69_37n	-1	known	missense	c.558	p.S186R	0.001	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016	63	0	0	73	13	15.12	-	-	-	C	14001111	A	C	14001111	3	2	67	1	0	0	0	0	1	0	0	0	1957	156	6	5	1367	5	C19orf57	19	14001111	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9799	14001111	45127872	1206	4568										
CC2D1A	0	genome.wustl.edu	37	chr19	14034388	14034388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaaccactcaaaccaattcAcccagctgggcaacatcact	5	15	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14034388	14034388	A	C	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1792	p.T598P	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	182	0	0	191	31	13.96	-	-	-	C	14034388	A	C	14034388	3	2	67	1	0	0	0	0	1	0	0	0	2751	159	6	5	1854	5	CC2D1A	19	14034388	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	33277	14034388	45094595	1207	4569										
PODNL1	0	genome.wustl.edu	37	chr19	14044698	14044698	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaccagcctgtacctgaaggTggtggcatccaggccactgt	12	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14044698	14044698	T	G	SNP	PODNL1	ENST00000339560	human	ensembl	69_37n	-1	known	missense	c.781	p.T261P	0.974	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODNL1	HGNC	ENSG00000132000	131	1	0.75	79	20	20.2	-	-	-	G	14044698	T	G	14044698	3	3	67	1	0	0	0	0	1	0	0	0	12253	1696	59	5	765	5	PODNL1	19	14044698	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	10310	14044698	45084285	1208	4570										
PKN1	0	genome.wustl.edu	37	chr19	14581076	14581076	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacgcgagctgtggactggTggggactgggtgtgctgctc	18	9	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14581076	14581076	T	G	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	1	known	missense	c.2413	p.W805G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	207	0	0	166	26	13.54	-	-	-	G	14581076	T	G	14581076	3	3	67	1	0	0	0	0	1	0	0	0	12053	1696	59	5	2512	5	PKN1	19	14581076	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	536378	14581076	44547907	1209	4571										
EMR3	0	genome.wustl.edu	37	chr19	14740913	14740913	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttggaggctgttgatgatggTgaagaggtaggccatgacct	16	5	0	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14740913	14740913	T	G	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.1750	p.T584P	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	244	2	0.81	143	22	13.33	-	-	-	G	14740913	T	G	14740913	3	3	67	1	0	0	0	0	1	0	0	0	5143	1696	59	5	220	5	EMR3	19	14740913	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	159837	14740913	44388070	1210	4572										
EMR2	0	genome.wustl.edu	37	chr19	14854490	14854490	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgcaggctgttgatgatggTgaagaggtaggccatgaccc	15	8	0	5			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	14854490	14854490	T	G	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.2290	p.T764P	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	186	1	0.53	135	21	13.46	-	-	-	G	14854490	T	G	14854490	3	3	67	1	0	0	0	0	1	0	0	0	5142	1696	59	5	193	5	EMR2	19	14854490	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	113577	14854490	44274493	1211	4573										
OR7C2	0	genome.wustl.edu	37	chr19	15053028	15053028	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttttccacctgtggttcccAcctctcagtggtcagcttgt	8	14	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	15053028	15053028	A	C	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	missense	c.728	p.H243P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	252	1	0.39	284	55	16.08	-	-	-	C	15053028	A	C	15053028	3	2	67	1	0	0	0	0	1	0	0	0	11291	159	6	5	730	5	OR7C2	19	15053028	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	198538	15053028	44075955	1212	4574										
NOTCH3	0	genome.wustl.edu	37	chr19	15300144	15300144	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgaagccgggaggacaggTgcaaatggcccggccgttca	16	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	15300144	15300144	T	G	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.1132	p.T378P	1.000	pfam_EGF-like_dom,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	85	0	0	56	13	18.84	-	-	-	G	15300144	T	G	15300144	3	3	67	1	0	0	0	0	1	0	0	0	10622	1696	59	5	5941	5	NOTCH3	19	15300144	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	247116	15300144	43828839	1213	4575										
WIZ	0	genome.wustl.edu	37	chr19	15547671	15547671	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgggtggaaagggcaccgTgagaggtaagcggggccgac	21	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	15547671	15547671	T	G	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.2542	p.T848P	0.712	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	39	0	0	27	6	18.18	-	-	-	G	15547671	T	G	15547671	3	3	67	1	0	0	0	0	1	0	0	0	17472	1696	59	5	1933	5	WIZ	19	15547671	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	247527	15547671	43581312	1214	4576										
PGLYRP2	0	genome.wustl.edu	37	chr19	15590171	15590171	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccgagtaggatccagaggacAccctgggccattgttgcagg	14	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	15590171	15590171	A	C	SNP	PGLYRP2	ENST00000292609	human	ensembl	69_37n	-1	known	silent	c.12	p.G4	0.000	NULL	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031	167	0	0	108	16	12.9	-	-	-	C	15590171	A	C	15590171	2	2	67	1	0	0	0	0	0	0	0	1	11868	146	6	5		5	PGLYRP2	19	15590171	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42500	15590171	43538812	1215	4577										
OR10H2	0	genome.wustl.edu	37	chr19	15838918	15838918	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcttctctgccttcccccAcctccaactgatgctcttcc	5	20	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	15838918	15838918	A	C	SNP	OR10H2	ENST00000305899	human	ensembl	69_37n	1	known	missense	c.65	p.H22P	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942	254	2	0.78	326	49	13.03	-	-	-	C	15838918	A	C	15838918	3	2	67	1	0	0	0	0	1	0	0	0	10979	159	6	5	67	5	OR10H2	19	15838918	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	248747	15838918	43290065	1216	4578										
CPAMD8	0	genome.wustl.edu	37	chr19	17025306	17025306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggacagtgccgtggatcccAccctgcaaggggactcacag	14	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	17025306	17025306	A	C	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.3962	p.V1321G	0.992	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	82	0	0	52	10	16.13	-	-	-	C	17025306	A	C	17025306	3	2	67	1	0	0	0	0	1	0	0	0	3825	146	6	5	1924	5	CPAMD8	19	17025306	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1186388	17025306	42103677	1217	4579										
BST2	0	genome.wustl.edu	37	chr19	17516117	17516117	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	taccacagtgtggttgcaggTggcggcctgggcctccacat	14	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	17516117	17516117	T	G	SNP	BST2	ENST00000252593	human	ensembl	69_37n	-1	known	missense	c.268	p.T90P	0.004	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	BST2	HGNC	ENSG00000130303	67	0	0	40	13	24.53	-	-	-	G	17516117	T	G	17516117	3	3	67	1	0	0	0	0	1	0	0	0	1542	1696	59	5	290	5	BST2	19	17516117	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	490811	17516117	41612866	1218	4580										
FAM129C	0	genome.wustl.edu	37	chr19	17662653	17662653	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccaggcagccagactctggTgcccagatccagccactctg	10	17	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	17662653	17662653	T	G	SNP	FAM129C	ENST00000332386	human	ensembl	69_37n	1	known	silent	c.1902	p.G634	0.000	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	141	0	0	74	13	14.94	-	-	-	G	17662653	T	G	17662653	2	3	67	1	0	0	0	0	0	0	0	1	5478	1683	59	5		5	FAM129C	19	17662653	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	146536	17662653	41466330	1219	4581										
IL12RB1	0	genome.wustl.edu	37	chr19	18179220	18179220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	attgcccccaaagtggtaggTggacaggaccgtagaccaca	12	11	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	18179220	18179220	T	G	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.1306	p.T436P	0.661	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	164	0	0	80	23	22.33	-	-	-	G	18179220	T	G	18179220	3	3	67	1	0	0	0	0	1	0	0	0	7680	1696	59	5	710	5	IL12RB1	19	18179220	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	516567	18179220	40949763	1220	4582										
IL12RB1	0	genome.wustl.edu	37	chr19	18179244	18179244	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggaccgtagaccacaaggTgagcttctcggggtgcgcag	15	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	18179244	18179244	T	G	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.1282	p.T428P	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	176	1	0.56	96	17	14.91	-	-	-	G	18179244	T	G	18179244	3	3	67	1	0	0	0	0	1	0	0	0	7680	1696	59	5	734	5	IL12RB1	19	18179244	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24	18179244	40949739	1221	4583										
MAST3	0	genome.wustl.edu	37	chr19	18245661	18245661	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagtacatagcccccgaggTgatcttccgccagggctatg	13	12	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	18245661	18245661	T	G	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	missense	c.1652	p.V551G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	158	1	0.62	126	25	16.34	-	-	-	G	18245661	T	G	18245661	3	3	67	1	0	0	0	0	1	0	0	0	9397	1696	59	5	1714	5	MAST3	19	18245661	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	66417	18245661	40883322	1222	4584										
TM6SF2	0	genome.wustl.edu	37	chr19	19378895	19378895	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctttctttgttcctcttgcAcctggcccaggggagagaaa	10	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	19378895	19378895	A	C	SNP	TM6SF2	ENST00000389363	human	ensembl	69_37n	-1	known	missense	c.611	p.V204G	0.673	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996	123	0	0	61	14	17.95	-	-	-	C	19378895	A	C	19378895	3	2	67	1	0	0	0	0	1	0	0	0	16068	173	6	5	538	5	TM6SF2	19	19378895	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1133234	19378895	39750088	1223	4585										
PBX4	0	genome.wustl.edu	37	chr19	19675752	19675752	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcactcaccggagctaggTgttgacaggcagctggcgtg	14	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	19675752	19675752	T	G	SNP	PBX4	ENST00000251203	human	ensembl	69_37n	-1	known	silent	c.915	p.T305	0.174	NULL	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX4	HGNC	ENSG00000105717	182	0	0	181	29	13.74	-	-	-	G	19675752	T	G	19675752	2	3	67	1	0	0	0	0	0	0	0	1	11568	1683	59	5		5	PBX4	19	19675752	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	296857	19675752	39453231	1224	4586										
TSHZ3	0	genome.wustl.edu	37	chr19	31769510	31769510	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcagtgagctcctgcagggTgtcatgcgagctcccacact	13	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	31769510	31769510	T	G	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.1189	p.T397P	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	145	0	0	124	24	16.22	-	-	-	G	31769510	T	G	31769510	3	3	67	1	0	0	0	0	1	0	0	0	16721	1696	59	5	2060	5	TSHZ3	19	31769510	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12093758	31769510	27359473	1225	4587										
SLC7A10	0	genome.wustl.edu	37	chr19	33703793	33703793	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcacccgggaggctgtggTgggggggatgcagttgggga	22	7	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	33703793	33703793	T	G	SNP	SLC7A10	ENST00000253188	human	ensembl	69_37n	-1	known	missense	c.472	p.T158P	0.354	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A10	HGNC	ENSG00000130876	89	0	0	53	15	22.06	-	-	-	G	33703793	T	G	33703793	3	3	67	1	0	0	0	0	1	0	0	0	14782	1696	59	5	1135	5	SLC7A10	19	33703793	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1934283	33703793	25425190	1226	4588										
GRAMD1A	0	genome.wustl.edu	37	chr19	35505210	35505210	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccagcctgacgggcccaccAccctgggccccttggatctg	11	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	35505210	35505210	A	C	SNP	GRAMD1A	ENST00000317991	human	ensembl	69_37n	1	known	missense	c.988	p.T330P	0.893	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	80	0	0	29	5	14.29	-	-	-	C	35505210	A	C	35505210	3	2	67	1	0	0	0	0	1	0	0	0	6798	159	6	5	1026	5	GRAMD1A	19	35505210	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1801417	35505210	23623773	1227	4589										
DMKN	0	genome.wustl.edu	37	chr19	35991002	35991002	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgctctggaataaacatcccAccttcctgcctggaccagac	7	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	35991002	35991002	A	C	SNP	DMKN	ENST00000469960	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DMKN	HGNC	ENSG00000161249	145	1	0.68	81	18	18.18	-	-	-	C	35991002	A	C	35991002	1	2	67	0	1	0	0	0	0	0	0	0	4618	174	6	5		5	DMKN	19	35991002	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	485792	35991002	23137981	1228	4590										
DMKN	0	genome.wustl.edu	37	chr19	35991278	35991278	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtccatggtagatgtctcAccttggaagttacagctgcc	12	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	35991278	35991278	A	C	SNP	DMKN	ENST00000462721	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.241	-	-	-	no_errors	DMKN	HGNC	ENSG00000161249	163	0	0	52	11	17.46	-	-	-	C	35991278	A	C	35991278	5	2	67	1	0	0	0	0	0	0	1	0	4618	173	6	5	157	5	DMKN	19	35991278	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	276	35991278	23137705	1229	4591										
GAPDHS	0	genome.wustl.edu	37	chr19	36029507	36029507	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtttaagtatgactccacccAcggccgatacaagggaagtg	11	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	36029507	36029507	A	C	SNP	GAPDHS	ENST00000222286	human	ensembl	69_37n	1	known	missense	c.371	p.H124P	0.998	pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,pirsf_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,pirsf_GlycerAld/Erythrose_P_DH,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDHS	HGNC	ENSG00000105679	129	0	0	106	13	10.92	-	-	-	C	36029507	A	C	36029507	3	2	67	1	0	0	0	0	1	0	0	0	6287	159	6	5	385	5	GAPDHS	19	36029507	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	38229	36029507	23099476	1230	4592										
ARHGAP33	0	genome.wustl.edu	37	chr19	36275162	36275162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtggtggagtttctgctcAcccatgtggacgtcctgttc	13	10	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	36275162	36275162	A	C	SNP	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	missense	c.1510	p.T504P	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	268	1	0.36	177	37	17.13	-	-	-	C	36275162	A	C	36275162	3	2	67	1	0	0	0	0	1	0	0	0	884	159	6	5	1572	5	ARHGAP33	19	36275162	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	245655	36275162	22853821	1231	4593										
SIPA1L3	0	genome.wustl.edu	37	chr19	38673348	38673348	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagagaacggaggagcccccAccacggccactccccttcag	10	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	38673348	38673348	A	C	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	silent	c.4398	p.P1466	0.005	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	97	0	0	53	17	24.29	-	-	-	C	38673348	A	C	38673348	2	2	67	1	0	0	0	0	0	0	0	1	14420	146	6	5		5	SIPA1L3	19	38673348	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2398186	38673348	20455635	1232	4594										
YIF1B	0	genome.wustl.edu	37	chr19	38798235	38798235	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgtgaagggcgggggtactcAcccgacatatttgtagccca	13	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	38798235	38798235	A	C	SNP	YIF1B	ENST00000339413	human	ensembl	69_37n	-1	known	splice_site	c.695+2	e6+2	1.000	-	-	-	no_errors	YIF1B	HGNC	ENSG00000167645	101	1	0.94	48	13	20.97	-	-	-	C	38798235	A	C	38798235	5	2	67	1	0	0	0	0	0	0	1	0	17573	173	6	5	340	5	YIF1B	19	38798235	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	124887	38798235	20330748	1233	4595										
RYR1	0	genome.wustl.edu	37	chr19	38959981	38959981	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcttgggacctggccaggTgggtcatctgaacctgggcc	15	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	38959981	38959981	T	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.3593	p.V1198G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	100	1	0.99	57	16	21.92	-	-	-	G	38959981	T	G	38959981	3	3	67	1	0	0	0	0	1	0	0	0	13854	1696	59	5	3699	5	RYR1	19	38959981	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	161746	38959981	20169002	1234	4596										
RYR1	0	genome.wustl.edu	37	chr19	38973712	38973712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgccgtcttcgtcctgcccAcccaccagaacgtcatccag	7	19	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	38973712	38973712	A	C	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.4666	p.T1556P	0.985	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	153	1	0.65	156	24	13.26	-	-	-	C	38973712	A	C	38973712	3	2	67	1	0	0	0	0	1	0	0	0	13854	159	6	5	4792	5	RYR1	19	38973712	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	13731	38973712	20155271	1235	4597										
FBXO17	0	genome.wustl.edu	37	chr19	39439300	39439300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgttcccgccatgctccaccTcccagcctctgaagccctct	6	21	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	39439300	39439300	T	C	SNP	FBXO17	ENST00000292852	human	ensembl	69_37n	-1	known	missense	c.368	p.E123G	1.000	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO17	HGNC	ENSG00000104835	158	1	0.63	109	21	16.15	-	-	-	C	39439300	T	C	39439300	3	2	67	1	0	0	0	0	1	0	0	0	5776	1551	54	5	484	5	FBXO17	19	39439300	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	465588	39439300	19689683	1236	4598										
FBL	0	genome.wustl.edu	37	chr19	40327237	40327237	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctccattacgcaggaaggTgtgggcattcagggccacaa	12	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	40327237	40327237	T	G	SNP	FBL	ENST00000221801	human	ensembl	69_37n	-1	known	missense	c.754	p.T252P	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202	146	1	0.68	153	21	12.07	-	-	-	G	40327237	T	G	40327237	3	3	67	1	0	0	0	0	1	0	0	0	5742	1696	59	5	223	5	FBL	19	40327237	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	887937	40327237	18801746	1237	4599										
FCGBP	0	genome.wustl.edu	37	chr19	40392455	40392455	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagatgcaatctttcaagggAccctggggatccaccagctt	10	11	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	40392455	40392455	A	C	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.8049	p.G2683	0.001	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	127	0	0	88	20	18.52	-	-	-	C	40392455	A	C	40392455	2	2	67	1	0	0	0	0	0	0	0	1	5824	262	10	5		5	FCGBP	19	40392455	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	65218	40392455	18736528	1238	4600										
AKT2	0	genome.wustl.edu	37	chr19	40741972	40741972	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catgaccacacccagcccccAccagtccacggcccggccat	7	22	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	40741972	40741972	A	C	SNP	AKT2	ENST00000392038	human	ensembl	69_37n	-1	known	missense	c.1000	p.W334G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT2	HGNC	ENSG00000105221	119	1	0.83	91	20	17.86	-	-	-	C	40741972	A	C	40741972	3	2	67	1	0	0	0	0	1	0	0	0	480	159	6	5	461	5	AKT2	19	40741972	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	349517	40741972	18387011	1239	4601										
PLD3	0	genome.wustl.edu	37	chr19	40873670	40873670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctccacggggaacccttccAccagccaggcctggctgggc	12	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	40873670	40873670	A	C	SNP	PLD3	ENST00000356508	human	ensembl	69_37n	1	known	missense	c.313	p.T105P	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223	60	0	0	39	8	17.02	-	-	-	C	40873670	A	C	40873670	3	2	67	1	0	0	0	0	1	0	0	0	12121	159	6	5	327	5	PLD3	19	40873670	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	131698	40873670	18255313	1240	4602										
SHKBP1	0	genome.wustl.edu	37	chr19	41094607	41094607	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tttccacccagcccggctccAccccactcgcttcctttaag	5	20	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	41094607	41094607	A	C	SNP	SHKBP1	ENST00000291842	human	ensembl	69_37n	1	known	missense	c.1414	p.T472P	1.000	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410	95	0	0	78	15	15.96	-	-	-	C	41094607	A	C	41094607	3	2	67	1	0	0	0	0	1	0	0	0	14373	159	6	5	1468	5	SHKBP1	19	41094607	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	220937	41094607	18034376	1241	4603										
CYP2F1	0	genome.wustl.edu	37	chr19	41622454	41622454	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agctgtgaaggaggccctggTggaccagggagaggagttta	18	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	41622454	41622454	T	G	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	1	known	missense	c.266	p.V89G	0.996	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	201	2	0.98	94	17	15.18	-	-	-	G	41622454	T	G	41622454	3	3	67	1	0	0	0	0	1	0	0	0	4202	1696	59	5	272	5	CYP2F1	19	41622454	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	527847	41622454	17506529	1242	4604										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41810134	41810134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctcaagcgccaataccagcAcccccaccgtcagcagctac	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	41810134	41810134	A	C	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.2230	p.T744P	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	115	1	0.85	46	13	22.03	-	-	-	C	41810134	A	C	41810134	3	2	67	1	0	0	0	0	1	0	0	0	7325	159	6	5	2280	5	HNRNPUL1	19	41810134	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	187680	41810134	17318849	1243	4605										
BCKDHA	0	genome.wustl.edu	37	chr19	41929027	41929027	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atctgctgagccaaggctggTgggatgaggagcaggagaag	18	6	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	41929027	41929027	T	G	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	1	known	missense	c.1120	p.W374G	1.000	pfam_DH_E1	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	144	1	0.68	75	18	19.35	-	-	-	G	41929027	T	G	41929027	3	3	67	1	0	0	0	0	1	0	0	0	1363	1696	59	5	1150	5	BCKDHA	19	41929027	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	118893	41929027	17199956	1244	4606										
ZNF574	0	genome.wustl.edu	37	chr19	42584233	42584233	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgttttgtgcatcggctggAgcggcgccataaatgcagca	13	10	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	42584233	42584233	A	G	SNP	ZNF574	ENST00000222339	human	ensembl	69_37n	1	known	missense	c.1745	p.E582G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732	75	0	0	28	15	34.09	-	-	-	G	42584233	A	G	42584233	3	3	67	1	0	0	0	0	1	0	0	0	18102	304	11	5	1477	5	ZNF574	19	42584233	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	655206	42584233	16544750	1245	4607										
POU2F2	0	genome.wustl.edu	37	chr19	42626661	42626661	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccctgctccctgcccacccAcctgtgtgctctgatgggga	10	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	42626661	42626661	A	C	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	splice_site	c.94+2	e2+2	0.986	-	-	-	no_errors	POU2F2	HGNC	ENSG00000028277	125	0	0	170	30	14.93	-	-	-	C	42626661	A	C	42626661	5	2	67	1	0	0	0	0	0	0	1	0	12345	173	6	5	1347	5	POU2F2	19	42626661	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	42428	42626661	16502322	1246	4608										
GSK3A	0	genome.wustl.edu	37	chr19	42736224	42736224	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttaccttgtgaggacggggTgagggtggtagtgcccgctg	18	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	42736224	42736224	T	G	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.1363	p.T455P	0.021	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	239	0	0	154	24	13.33	-	-	-	G	42736224	T	G	42736224	3	3	67	1	0	0	0	0	1	0	0	0	6874	1696	59	5	96	5	GSK3A	19	42736224	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	109563	42736224	16392759	1247	4609										
PRR19	0	genome.wustl.edu	37	chr19	42814039	42814039	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggtgccaggcagccccacActccccgccaagccctcccc	8	23	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	42814039	42814039	A	C	SNP	PRR19	ENST00000341747	human	ensembl	69_37n	1	known	silent	c.303	p.T101	0.000	NULL	NULL	-	no_errors	PRR19	HGNC	ENSG00000188368	81	0	0	36	8	18.18	-	-	-	C	42814039	A	C	42814039	2	2	67	1	0	0	0	0	0	0	0	1	12672	146	6	5		5	PRR19	19	42814039	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	77815	42814039	16314944	1248	4610										
XRCC1	0	genome.wustl.edu	37	chr19	44056989	44056989	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatggcgacagctgggctggTggtttgctgggggtcttctt	18	7	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	44056989	44056989	T	G	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	silent	c.783	p.P261	0.223	NULL	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	350	1	0.28	397	58	12.69	-	-	-	G	44056989	T	G	44056989	2	3	67	1	0	0	0	0	0	0	0	1	17549	1683	59	5		5	XRCC1	19	44056989	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1242950	44056989	15071994	1249	4611										
XRCC1	0	genome.wustl.edu	37	chr19	44057132	44057132	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caccaaagtctgatgatttcAccttggaggtgctgcctatg	10	10	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	44057132	44057132	A	C	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	splice_site	c.711+2	e7+2	1.000	-	-	-	no_errors	XRCC1	HGNC	ENSG00000073050	204	0	0	169	24	12.37	-	-	-	C	44057132	A	C	44057132	5	2	67	1	0	0	0	0	0	0	1	0	17549	173	6	5	1232	5	XRCC1	19	44057132	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	143	44057132	15071851	1250	4612										
ZNF229	0	genome.wustl.edu	37	chr19	44934529	44934529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcgtagatgctccttcccAcccttgatggggagcagcat	12	13	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	44934529	44934529	A	C	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.427	p.W143G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	121	0	0	122	25	16.89	-	-	-	C	44934529	A	C	44934529	3	2	67	1	0	0	0	0	1	0	0	0	17878	159	6	5	2054	5	ZNF229	19	44934529	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	877397	44934529	14194454	1251	4613										
CBLC	0	genome.wustl.edu	37	chr19	45284606	45284606	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcttcgagttcgacgtcttcAccaggctctttcaggtcagg	10	12	6	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	45284606	45284606	A	C	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	missense	c.643	p.T215P	1.000	pfam_Adaptor_Cbl_EF_hand-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	56	0	0	36	9	20	-	-	-	C	45284606	A	C	45284606	3	2	67	1	0	0	0	0	1	0	0	0	2727	159	6	5	653	5	CBLC	19	45284606	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	350077	45284606	13844377	1252	4614										
CBLC	0	genome.wustl.edu	37	chr19	45297490	45297490	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcggctcctccattgcccccAcggccagatctgccccccag	8	21	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	45297490	45297490	A	C	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	silent	c.1314	p.P438	0.638	NULL	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	178	1	0.56	140	23	14.11	-	-	-	C	45297490	A	C	45297490	2	2	67	1	0	0	0	0	0	0	0	1	2727	146	6	5		5	CBLC	19	45297490	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12884	45297490	13831493	1253	4615										
APOC4	0	genome.wustl.edu	37	chr19	45448078	45448078	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gatgagtcgctggagcctggTgaggggcaggatgaaggagc	20	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	45448078	45448078	T	G	SNP	APOC4	ENST00000419266	human	ensembl	69_37n	1	known	missense	c.149	p.V50G	0.438	NULL	NULL	-	no_errors	APOC4	HGNC	ENSG00000224916	320	1	0.31	244	29	10.58	-	-	-	G	45448078	T	G	45448078	3	3	67	1	0	0	0	0	1	0	0	0	802	1696	59	5	155	5	APOC4	19	45448078	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	150588	45448078	13680905	1254	4616										
EML2	0	genome.wustl.edu	37	chr19	46136353	46136353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttccttagtggttcccgccAcctgtcccgtggcgatggtg	12	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	46136353	46136353	A	C	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	missense	c.977	p.V326G	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	200	2	0.98	204	33	13.87	-	-	-	C	46136353	A	C	46136353	3	2	67	1	0	0	0	0	1	0	0	0	5134	159	6	5	1635	5	EML2	19	46136353	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	688275	46136353	12992630	1255	4617										
QPCTL	0	genome.wustl.edu	37	chr19	46198868	46198868	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatgactcgaagctcttcccAcccggatcgaccccctttgt	7	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	46198868	46198868	A	C	SNP	QPCTL	ENST00000012049	human	ensembl	69_37n	1	known	silent	c.525	p.P175	0.004	pfam_Peptidase_M28	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478	114	1	0.84	84	15	15.15	-	-	-	C	46198868	A	C	46198868	2	2	67	1	0	0	0	0	0	0	0	1	12958	146	6	5		5	QPCTL	19	46198868	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	62515	46198868	12930115	1256	4618										
PRKD2	0	genome.wustl.edu	37	chr19	47192799	47192799	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagggcagacgcacctgggTgatgaggaacttggtgaggc	18	8	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	47192799	47192799	T	G	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1966	p.T656P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	104	0	0	100	25	19.84	-	-	-	G	47192799	T	G	47192799	3	3	67	1	0	0	0	0	1	0	0	0	12600	1696	59	5	690	5	PRKD2	19	47192799	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	993931	47192799	11936184	1257	4619										
CCDC9	0	genome.wustl.edu	37	chr19	47773702	47773702	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctgcccatgaaccatcccAccgctatggtgagtgggtgc	11	15	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	47773702	47773702	A	C	SNP	CCDC9	ENST00000221922	human	ensembl	69_37n	1	known	missense	c.941	p.H314P	0.000	NULL	NULL	-	no_errors	CCDC9	HGNC	ENSG00000105321	137	1	0.71	173	29	14.08	-	-	-	C	47773702	A	C	47773702	3	2	67	1	0	0	0	0	1	0	0	0	2894	159	6	5	971	5	CCDC9	19	47773702	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	580903	47773702	11355281	1258	4620										
CCDC114	0	genome.wustl.edu	37	chr19	48809532	48809532	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgacggcgtaggcagaggTggaggagaggataagggtgc	20	6	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	48809532	48809532	T	G	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	missense	c.535	p.T179P	0.966	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	261	2	0.75	162	30	15.54	-	-	-	G	48809532	T	G	48809532	3	3	67	1	0	0	0	0	1	0	0	0	2776	1696	59	5	1513	5	CCDC114	19	48809532	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1035830	48809532	10319451	1259	4621										
TEAD2	0	genome.wustl.edu	37	chr19	49846611	49846611	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaccactgctgatgctgccAccggcccctgcctcctcacc	7	22	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	49846611	49846611	A	C	SNP	TEAD2	ENST00000377214	human	ensembl	69_37n	-1	known	silent	c.963	p.G321	0.019	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219	129	1	0.76	56	15	21.13	-	-	-	C	49846611	A	C	49846611	2	2	67	1	0	0	0	0	0	0	0	1	15834	146	6	5		5	TEAD2	19	49846611	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1037079	49846611	9282372	1260	4622										
CCDC155	0	genome.wustl.edu	37	chr19	49916250	49916250	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttccagggagagccagcgcAccctgaagaaggaaggaagg	15	10	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	49916250	49916250	A	C	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.1295	p.H432P	0.000	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	120	0	0	116	18	13.24	-	-	-	C	49916250	A	C	49916250	3	2	67	1	0	0	0	0	1	0	0	0	2814	159	6	5	1353	5	CCDC155	19	49916250	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	69639	49916250	9212733	1261	4623										
PIH1D1	0	genome.wustl.edu	37	chr19	49952841	49952841	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcggtcacgtcggcgggaggAgggatagagggggagtggca	22	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	49952841	49952841	A	G	SNP	PIH1D1	ENST00000262265	human	ensembl	69_37n	-1	known	silent	c.228	p.P76	0.926	NULL	NULL	-	no_errors	PIH1D1	HGNC	ENSG00000104872	207	0	0	138	28	16.77	-	-	-	G	49952841	A	G	49952841	2	3	67	1	0	0	0	0	0	0	0	1	11980	291	11	5		5	PIH1D1	19	49952841	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	36591	49952841	9176142	1262	4624										
CPT1C	0	genome.wustl.edu	37	chr19	50216020	50216020	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggagcagtggcagctgtccAccagccagatccctgttcag	12	14	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	50216020	50216020	A	C	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.2047	p.T683P	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	47	0	0	58	16	21.62	-	-	-	C	50216020	A	C	50216020	3	2	67	1	0	0	0	0	1	0	0	0	3863	159	6	5	2109	5	CPT1C	19	50216020	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	263179	50216020	8912963	1263	4625										
PTOV1	0	genome.wustl.edu	37	chr19	50360376	50360376	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccatccggcaggtcatcaccAcccgcaagcaggtgtgccag	11	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	50360376	50360376	A	C	SNP	PTOV1	ENST00000391842	human	ensembl	69_37n	1	known	missense	c.703	p.T235P	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960	61	0	0	32	16	33.33	-	-	-	C	50360376	A	C	50360376	3	2	67	1	0	0	0	0	1	0	0	0	12850	159	6	5	725	5	PTOV1	19	50360376	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	144356	50360376	8768607	1264	4626										
MYH14	0	genome.wustl.edu	37	chr19	50758520	50758520	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctttccttggctccttcccAccgtcgcccccaggatctgc	7	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	50758520	50758520	A	C	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	silent	c.1989	p.P663	0.093	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	131	1	0.75	141	25	14.88	-	-	-	C	50758520	A	C	50758520	2	2	67	1	0	0	0	0	0	0	0	1	10105	146	6	5		5	MYH14	19	50758520	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	398144	50758520	8370463	1265	4627										
MYH14	0	genome.wustl.edu	37	chr19	50762426	50762426	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaagctggagccacggctggTgctggaccagcttcgctgca	15	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	50762426	50762426	T	G	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.2258	p.V753G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	38	0	0	24	8	25	-	-	-	G	50762426	T	G	50762426	3	3	67	1	0	0	0	0	1	0	0	0	10105	1696	59	5	2328	5	MYH14	19	50762426	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3906	50762426	8366557	1266	4628										
MYBPC2	0	genome.wustl.edu	37	chr19	50947028	50947028	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgtttgtgggtgaccgggTggaaatggcagtggaggtgt	21	3	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	50947028	50947028	T	G	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.1088	p.V363G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	352	1	0.28	267	33	10.96	-	-	-	G	50947028	T	G	50947028	3	3	67	1	0	0	0	0	1	0	0	0	10084	1696	59	5	1130	5	MYBPC2	19	50947028	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	184602	50947028	8181955	1267	4629										
CLDND2	0	genome.wustl.edu	37	chr19	51871824	51871824	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cactctggaggctccgcttcAcccccatgccactgaggctg	10	17	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	51871824	51871824	A	C	SNP	CLDND2	ENST00000291715	human	ensembl	69_37n	-1	known	missense	c.8	p.V3G	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND2	HGNC	ENSG00000160318	54	0	0	30	12	28.57	-	-	-	C	51871824	A	C	51871824	3	2	67	1	0	0	0	0	1	0	0	0	3524	159	6	5	511	5	CLDND2	19	51871824	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	924796	51871824	7257159	1268	4630										
FPR2	0	genome.wustl.edu	37	chr19	52272006	52272006	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcggatcctcccattggtggTgcttggggtcacctttgtcc	13	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	52272006	52272006	T	G	SNP	FPR2	ENST00000340023	human	ensembl	69_37n	1	known	missense	c.95	p.V32G	0.131	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_P2_purnocptor,prints_DEZorph_rcpt	-	no_errors	FPR2	HGNC	ENSG00000171049	330	3	0.9	249	34	11.97	-	-	-	G	52272006	T	G	52272006	3	3	67	1	0	0	0	0	1	0	0	0	6087	1696	59	5	97	5	FPR2	19	52272006	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	400182	52272006	6856977	1269	4631										
ZNF350	0	genome.wustl.edu	37	chr19	52472356	52472356	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actcctcccaagtgaagtccAcagccacatcctccagtgtt	6	16	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	52472356	52472356	A	C	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	missense	c.44	p.V15G	0.085	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	253	1	0.39	177	29	14.01	-	-	-	C	52472356	A	C	52472356	3	2	67	1	0	0	0	0	1	0	0	0	17959	159	6	5	1566	5	ZNF350	19	52472356	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	200350	52472356	6656627	1270	4632										
ZNF614	0	genome.wustl.edu	37	chr19	52521719	52521719	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actcctcccagctgaattccAcagccacatcctccagggtc	6	18	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	52521719	52521719	A	C	SNP	ZNF614	ENST00000270649	human	ensembl	69_37n	-1	known	missense	c.44	p.V15G	0.986	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556	168	1	0.59	125	24	16.11	-	-	-	C	52521719	A	C	52521719	3	2	67	1	0	0	0	0	1	0	0	0	18135	159	6	5	1725	5	ZNF614	19	52521719	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	49363	52521719	6607264	1271	4633										
ZNF616	0	genome.wustl.edu	37	chr19	52633752	52633752	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttgagtaaagtatcactctAcctgagtagccatcactgac	7	11	3	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	52633752	52633752	A	C	SNP	ZNF616	ENST00000330123	human	ensembl	69_37n	-1	known	splice_site	c.12+2	e1+2	0.199	-	-	-	no_errors	ZNF616	HGNC	ENSG00000204611	295	1	0.34	193	30	13.45	-	-	-	C	52633752	A	C	52633752	5	2	67	1	0	0	0	0	0	0	1	0	18137	405	14	5	2343	5	ZNF616	19	52633752	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	112033	52633752	6495231	1272	4634										
VN1R2	0	genome.wustl.edu	37	chr19	53762017	53762017	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacagatttgattctcaggcAcctgactgtagctgactcct	8	12	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	53762017	53762017	A	C	SNP	VN1R2	ENST00000341702	human	ensembl	69_37n	1	known	missense	c.389	p.H130P	0.863	pfam_Vmron_rcpt_1,pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131	179	0	0	175	33	15.71	-	-	-	C	53762017	A	C	53762017	3	2	67	1	0	0	0	0	1	0	0	0	17276	159	6	5	391	5	VN1R2	19	53762017	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1128265	53762017	5366966	1273	4635										
MYADM	0	genome.wustl.edu	37	chr19	54377172	54377172	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctatgtccagttcctgtcccAcggccgttcgcgggaccacg	11	16	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	54377172	54377172	A	C	SNP	MYADM	ENST00000336967	human	ensembl	69_37n	1	known	missense	c.389	p.H130P	0.004	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	MYADM	HGNC	ENSG00000179820	102	0	0	87	20	18.69	-	-	-	C	54377172	A	C	54377172	3	2	67	1	0	0	0	0	1	0	0	0	10078	159	6	5	391	5	MYADM	19	54377172	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	615155	54377172	4751811	1274	4636										
PRKCG	0	genome.wustl.edu	37	chr19	54401267	54401267	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctccccttcccctagtcccAccgaccccaagcgctgcttc	5	23	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	54401267	54401267	A	C	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	missense	c.994	p.T332P	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	80	0	0	122	19	13.38	-	-	-	C	54401267	A	C	54401267	3	2	67	1	0	0	0	0	1	0	0	0	12593	159	6	5	1032	5	PRKCG	19	54401267	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	24095	54401267	4727716	1275	4637										
TFPT	0	genome.wustl.edu	37	chr19	54611423	54611423	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttccgcccactgggcccctcAccgggggctgggctgccggg	16	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	54611423	54611423	A	C	SNP	TFPT	ENST00000391757	human	ensembl	69_37n	-1	putative	missense	c.515	p.V172G	0.000	NULL	NULL	-	no_errors	TFPT	HGNC	ENSG00000105619	66	0	0	51	14	21.21	-	-	-	C	54611423	A	C	54611423	3	2	67	1	0	0	0	0	1	0	0	0	15905	146	6	5	217	5	TFPT	19	54611423	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	210156	54611423	4517560	1276	4638										
PRPF31	0	genome.wustl.edu	37	chr19	54626899	54626899	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcagatcctcaccaatgccAccatcatggtcgtcagcgtc	8	15	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	54626899	54626899	A	C	SNP	PRPF31	ENST00000321030	human	ensembl	69_37n	1	known	missense	c.487	p.T163P	1.000	NULL	pfam_SnoRNA-bd_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618	156	1	0.64	92	17	15.6	-	-	-	C	54626899	A	C	54626899	3	2	67	1	0	0	0	0	1	0	0	0	12647	159	6	5	505	5	PRPF31	19	54626899	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	15476	54626899	4502084	1277	4639										
LILRB5	0	genome.wustl.edu	37	chr19	54756347	54756347	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgggtcttcatgcagaattAcctcttctgcaggccctggt	10	11	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	54756347	54756347	A	C	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	splice_site	c.1511+2	e10+2	0.104	-	-	-	no_errors	LILRB5	HGNC	ENSG00000105609	173	0	0	205	32	13.39	-	-	-	C	54756347	A	C	54756347	5	2	67	1	0	0	0	0	0	0	1	0	8849	405	14	5	251	5	LILRB5	19	54756347	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	129448	54756347	4372636	1278	4640										
NCR1	0	genome.wustl.edu	37	chr19	55421416	55421416	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccttgcacctgaagaccccAcctttcctggtgagtaactg	9	14	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	55421416	55421416	A	C	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	1	known	missense	c.673	p.T225P	0.004	NULL	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	237	1	0.42	257	29	10.07	-	-	-	C	55421416	A	C	55421416	3	2	67	1	0	0	0	0	1	0	0	0	10309	159	6	5	691	5	NCR1	19	55421416	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	665069	55421416	3707567	1279	4641										
EPS8L1	0	genome.wustl.edu	37	chr19	55598951	55598951	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagaagcaaaagaagaaggTggaaggcgaggtggaaatgg	19	2	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	55598951	55598951	T	G	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	missense	c.2141	p.V714G	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	218	1	0.46	124	29	18.59	-	-	-	G	55598951	T	G	55598951	3	3	67	1	0	0	0	0	1	0	0	0	5232	1696	59	5	2267	5	EPS8L1	19	55598951	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	177535	55598951	3530032	1280	4642										
SYT5	0	genome.wustl.edu	37	chr19	55687437	55687437	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctagctcatgcttgtctgccAcctgctgccctggcccggat	10	16	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	55687437	55687437	A	C	SNP	SYT5	ENST00000354308	human	ensembl	69_37n	-1	known	missense	c.308	p.V103G	0.018	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990	140	0	0	141	29	16.96	-	-	-	C	55687437	A	C	55687437	3	2	67	1	0	0	0	0	1	0	0	0	15569	159	6	5	876	5	SYT5	19	55687437	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	88486	55687437	3441546	1281	4643										
ZSCAN5B	0	genome.wustl.edu	37	chr19	56701656	56701656	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggcttcttggccatctgggTgactgaccgggcccgcaggg	16	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	56701656	56701656	T	G	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	missense	c.1028	p.H343P	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	167	0	0	137	25	15.43	-	-	-	G	56701656	T	G	56701656	3	3	67	1	0	0	0	0	1	0	0	0	18330	1696	59	5	463	5	ZSCAN5B	19	56701656	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1014219	56701656	2427327	1282	4644										
RPS5	0	genome.wustl.edu	37	chr19	58899536	58899536	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggagacagcagcaccagcggTggcagagaccccagacatca	13	13	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	58899536	58899536	T	G	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.32	p.V11G	0.997	NULL	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	177	0	0	101	18	15	-	-	-	G	58899536	T	G	58899536	3	3	67	1	0	0	0	0	1	0	0	0	13734	1696	59	5	34	5	RPS5	19	58899536	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2197880	58899536	229447	1283	4645										
ZNF584	0	genome.wustl.edu	37	chr19	58926963	58926963	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcgtgggtgcccagctgggTggatgtgactccagtcagca	16	10	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	19	58926963	58926963	T	G	SNP	ZNF584	ENST00000306910	human	ensembl	69_37n	1	known	missense	c.242	p.V81G	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574	157	1	0.62	136	29	17.58	-	-	-	G	58926963	T	G	58926963	3	3	67	1	0	0	0	0	1	0	0	0	18112	1696	59	5	252	5	ZNF584	19	58926963	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	27427	58926963	202020	1284	4646										
SIRPG	0	genome.wustl.edu	37	chr20	1616206	1616206	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgacgtttacctggttccccAccctcatgggctgttgagta	10	12	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	1616206	1616206	A	C	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.788	p.V263G	0.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	127	0	0	156	23	12.78	-	-	-	C	1616206	A	C	1616206	3	2	67	1	0	0	0	0	1	0	0	0	14425	159	6	5	383	5	SIRPG	20	1616206	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		1616206	61409314	1285	4647										
SLC4A11	0	genome.wustl.edu	37	chr20	3211627	3211627	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagagacccgaaagcgatggTgggcaggaggcaggcgaagt	19	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	3211627	3211627	T	G	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.1249	p.T417P	0.991	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	284	0	0	258	30	10.38	-	-	-	G	3211627	T	G	3211627	3	3	67	1	0	0	0	0	1	0	0	0	14741	1696	59	5	1551	5	SLC4A11	20	3211627	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1595421	3211627	59813893	1286	4648										
ADAM33	0	genome.wustl.edu	37	chr20	3655672	3655672	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagcccatggaagcatctcAccgtgtggttgggggccagc	15	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	3655672	3655672	A	C	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	splice_site	c.333+2	e4+2	1.000	-	-	-	no_errors	ADAM33	HGNC	ENSG00000149451	66	0	0	35	9	20	-	-	-	C	3655672	A	C	3655672	5	2	67	1	0	0	0	0	0	0	1	0	250	173	6	5	2182	5	ADAM33	20	3655672	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	444045	3655672	59369848	1287	4649										
JAG1	0	genome.wustl.edu	37	chr20	10627700	10627700	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgttggaggaaatataccgcAccccttcaggtgtgtcgttg	12	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	10627700	10627700	A	C	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.1772	p.V591G	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	152	0	0	125	25	16.56	-	-	-	C	10627700	A	C	10627700	3	2	67	1	0	0	0	0	1	0	0	0	7988	159	6	5	1936	5	JAG1	20	10627700	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6972028	10627700	52397820	1288	4650										
BFSP1	0	genome.wustl.edu	37	chr20	17475140	17475140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttctttctcctgcagacccAcctgcccattctctaaaggg	6	16	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	17475140	17475140	A	C	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	missense	c.1577	p.V526G	0.000	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	63	0	0	35	11	23.91	-	-	-	C	17475140	A	C	17475140	3	2	67	1	0	0	0	0	1	0	0	0	1420	159	6	5	424	5	BFSP1	20	17475140	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6847440	17475140	45550380	1289	4651										
CSRP2BP	0	genome.wustl.edu	37	chr20	18163823	18163823	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgtcacagattcgttcccAcctgcacaggagcgaccctc	8	17	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	18163823	18163823	A	C	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.1865	p.H622P	1.000	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	150	0	0	131	24	15.48	-	-	-	C	18163823	A	C	18163823	3	2	67	1	0	0	0	0	1	0	0	0	4000	159	6	5	1895	5	CSRP2BP	20	18163823	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	688683	18163823	44861697	1290	4652										
C20orf79	0	genome.wustl.edu	37	chr20	18794549	18794549	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttctgggttcagttccagaAcctgccatgccacatcctct	8	14	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	18794549	18794549	A	C	SNP	C20orf79	ENST00000377428	human	ensembl	69_37n	1	known	missense	c.90	p.E30D	0.000	NULL	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	-	no_errors	C20orf79	HGNC	ENSG00000132631	168	1	0.59	98	28	22.22	-	-	-	C	18794549	A	C	18794549	3	2	67	1	0	0	0	0	1	0	0	0	2139	40	2	5	92	5	C20orf79	20	18794549	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	630726	18794549	44230971	1291	4653										
PLK1S1	0	genome.wustl.edu	37	chr20	21226994	21226994	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggtcaggtacatcatgtggTgtccctgttatgcattttgc	11	8	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	21226994	21226994	T	G	SNP	PLK1S1	ENST00000457464	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970	43	0	0	38	9	19.15	-	-	-	G	21226994	T	G	21226994	1	3	67	0	1	0	0	0	0	0	0	0	12169	1711	59	5		5	PLK1S1	20	21226994	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2432445	21226994	41798526	1292	4654										
CST11	0	genome.wustl.edu	37	chr20	23433219	23433219	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggcgggaagtcatacactcAcctgcctctggactttaagg	11	11	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	23433219	23433219	A	C	SNP	CST11	ENST00000377009	human	ensembl	69_37n	-1	known	splice_site	c.228+2	e1+2	0.312	-	-	-	no_errors	CST11	HGNC	ENSG00000125831	99	0	0	52	14	21.21	-	-	-	C	23433219	A	C	23433219	5	2	67	1	0	0	0	0	0	0	1	0	4003	173	6	5	198	5	CST11	20	23433219	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2206225	23433219	39592301	1293	4655										
ENTPD6	0	genome.wustl.edu	37	chr20	25203432	25203432	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aagcagctgtgaggcctgggTgctcggagcccactgaccgc	15	13	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	25203432	25203432	T	G	SNP	ENTPD6	ENST00000485936	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ENTPD6	HGNC	ENSG00000197586	81	0	0	38	11	22.45	-	-	-	G	25203432	T	G	25203432	1	3	67	0	1	0	0	0	0	0	0	0	5180	1711	59	5		5	ENTPD6	20	25203432	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1770213	25203432	37822088	1294	4656										
FAM83C	0	genome.wustl.edu	37	chr20	33875546	33875546	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttgatgctgctgaggctggTgctggagggcagggacgacg	19	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	33875546	33875546	T	G	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	missense	c.1036	p.T346P	0.125	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	233	1	0.43	125	24	16.11	-	-	-	G	33875546	T	G	33875546	3	3	67	1	0	0	0	0	1	0	0	0	5680	1696	59	5	1211	5	FAM83C	20	33875546	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	8672114	33875546	29149974	1295	4657										
CEP250	0	genome.wustl.edu	37	chr20	34053586	34053586	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggaccaatcccccagaggTgggaaaatgtggaggagcca	15	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	34053586	34053586	T	G	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.262	p.W88G	0.915	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	260	1	0.38	173	28	13.93	-	-	-	G	34053586	T	G	34053586	3	3	67	1	0	0	0	0	1	0	0	0	3281	1696	59	5	272	5	CEP250	20	34053586	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	178040	34053586	28971934	1296	4658										
RBM12	0	genome.wustl.edu	37	chr20	34242645	34242645	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggggaatggatggcattggTggcagagatggcatcgctgg	20	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	34242645	34242645	T	G	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	silent	c.600	p.P200	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	218	0	0	226	33	12.69	-	-	-	G	34242645	T	G	34242645	2	3	67	1	0	0	0	0	0	0	0	1	13196	1683	59	5		5	RBM12	20	34242645	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	189059	34242645	28782875	1297	4659										
RBM12	0	genome.wustl.edu	37	chr20	34242681	34242681	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctggaattggaggaattggTggcggcgggactgtgttcat	18	5	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	34242681	34242681	T	G	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	silent	c.564	p.P188	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	222	1	0.44	244	31	11.27	-	-	-	G	34242681	T	G	34242681	2	3	67	1	0	0	0	0	0	0	0	1	13196	1683	59	5		5	RBM12	20	34242681	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	36	34242681	28782839	1298	4660										
CHD6	0	genome.wustl.edu	37	chr20	40080655	40080655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgagtcaggatgtccttccAccggccccagctgacagtgg	12	13	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	40080655	40080655	A	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.3334	p.W1112G	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	122	0	0	154	27	14.92	-	-	-	C	40080655	A	C	40080655	3	2	67	1	0	0	0	0	1	0	0	0	3358	159	6	5	4877	5	CHD6	20	40080655	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5837974	40080655	22944865	1299	4661										
TOX2	0	genome.wustl.edu	37	chr20	42635272	42635272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccggagccatccctcctgcAcctgggggaccacgaagcca	11	18	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	42635272	42635272	A	C	SNP	TOX2	ENST00000341197	human	ensembl	69_37n	1	known	missense	c.251	p.H84P	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX2	HGNC	ENSG00000124191	199	1	0.5	119	20	14.29	-	-	-	C	42635272	A	C	42635272	3	2	67	1	0	0	0	0	1	0	0	0	16474	159	6	5	391	5	TOX2	20	42635272	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2554617	42635272	20390248	1300	4662										
WISP2	0	genome.wustl.edu	37	chr20	43355835	43355835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctgtgggctgggcatggccAcccgggtgtccaaccagaac	14	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	43355835	43355835	A	C	SNP	WISP2	ENST00000190983	human	ensembl	69_37n	1	known	missense	c.640	p.T214P	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205	28	0	0	50	18	26.09	-	-	-	C	43355835	A	C	43355835	3	2	67	1	0	0	0	0	1	0	0	0	17470	159	6	5	654	5	WISP2	20	43355835	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	720563	43355835	19669685	1301	4663										
CTSA	0	genome.wustl.edu	37	chr20	44521475	44521475	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atgctggcatctacatccccAccctggccgtgctggtcatg	10	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	44521475	44521475	A	C	SNP	CTSA	ENST00000372484	human	ensembl	69_37n	1	known	missense	c.610	p.T204P	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601	106	1	0.91	73	24	24.24	-	-	-	C	44521475	A	C	44521475	3	2	67	1	0	0	0	0	1	0	0	0	4061	159	6	5	632	5	CTSA	20	44521475	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1165640	44521475	18504045	1302	4664										
PCIF1	0	genome.wustl.edu	37	chr20	44575025	44575025	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctactttggctcccgcgggTgagggccaagggctgcccct	15	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	44575025	44575025	T	G	SNP	PCIF1	ENST00000372409	human	ensembl	69_37n	1	known	splice_site	c.1613+2	e12+2	1.000	-	-	-	no_errors	PCIF1	HGNC	ENSG00000100982	50	0	0	58	12	16.9	-	-	-	G	44575025	T	G	44575025	5	3	67	1	0	0	0	0	0	0	1	0	11653	1710	59	5	1661	5	PCIF1	20	44575025	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	53550	44575025	18450495	1303	4665										
SLC12A5	0	genome.wustl.edu	37	chr20	44664504	44664504	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttcctgcggctcacctgggTggtgggcattgcaggcatca	14	12	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	44664504	44664504	T	G	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.437	p.V146G	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	130	1	0.76	178	24	11.82	-	-	-	G	44664504	T	G	44664504	3	3	67	1	0	0	0	0	1	0	0	0	14475	1696	59	5	507	5	SLC12A5	20	44664504	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	89479	44664504	18361016	1304	4666										
EYA2	0	genome.wustl.edu	37	chr20	45633615	45633615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctcccccgccagccttccAcagccatggcagcctacggc	8	21	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	45633615	45633615	A	C	SNP	EYA2	ENST00000327619	human	ensembl	69_37n	1	known	missense	c.190	p.T64P	0.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655	115	0	0	117	19	13.87	-	-	-	C	45633615	A	C	45633615	3	2	67	1	0	0	0	0	1	0	0	0	5366	159	6	5	200	5	EYA2	20	45633615	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	969111	45633615	17391905	1305	4667										
EYA2	0	genome.wustl.edu	37	chr20	45633692	45633692	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctatacagcttacccaccTccagcacaagcctatggaat	5	16	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	45633692	45633692	T	C	SNP	EYA2	ENST00000327619	human	ensembl	69_37n	1	known	silent	c.267	p.P89	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655	110	1	0.89	68	15	18.07	-	-	-	C	45633692	T	C	45633692	2	2	67	1	0	0	0	0	0	0	0	1	5366	1538	54	5		5	EYA2	20	45633692	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	77	45633692	17391828	1306	4668										
ARFGEF2	0	genome.wustl.edu	37	chr20	47614927	47614927	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatgaactggcttccccccAccatcctcgcatgttcagct	8	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	47614927	47614927	A	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.3317	p.H1106P	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	155	1	0.64	167	34	16.92	-	-	-	C	47614927	A	C	47614927	3	2	67	1	0	0	0	0	1	0	0	0	855	159	6	5	3415	5	ARFGEF2	20	47614927	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1981235	47614927	15410593	1307	4669										
CSE1L	0	genome.wustl.edu	37	chr20	47711454	47711454	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtgaataaccccaaaattcAcctggcacagtcacttcaca	6	13	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	47711454	47711454	A	C	SNP	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	missense	c.2780	p.H927P	1.000	pfam_CAS_CSE1_C,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	109	0	0	92	23	20	-	-	-	C	47711454	A	C	47711454	3	2	67	1	0	0	0	0	1	0	0	0	3962	159	6	5	2870	5	CSE1L	20	47711454	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	96527	47711454	15314066	1308	4670										
SALL4	0	genome.wustl.edu	37	chr20	50400977	50400977	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccaaggaaaccgggagggTaggaacccccccactctgga	12	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	50400977	50400977	T	G	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	missense	c.2989	p.T997P	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	128	0	0	90	14	13.33	-	-	-	G	50400977	T	G	50400977	3	3	67	1	0	0	0	0	1	0	0	0	13899	1638	57	5	176	5	SALL4	20	50400977	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2689523	50400977	12624543	1309	4671										
ZFP64	0	genome.wustl.edu	37	chr20	50776679	50776679	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacccgtgtgggatcgcaggTggacagtgagctggctggag	18	9	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	50776679	50776679	T	G	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.746	p.H249P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	250	0	0	200	27	11.89	-	-	-	G	50776679	T	G	50776679	3	3	67	1	0	0	0	0	1	0	0	0	17748	1696	59	5	2498	5	ZFP64	20	50776679	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	375702	50776679	12248841	1310	4672										
NPEPL1	0	genome.wustl.edu	37	chr20	57287617	57287617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacaaggccagatgacatccAcctgctgtactcagggaagt	11	11	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	57287617	57287617	A	C	SNP	NPEPL1	ENST00000356091	human	ensembl	69_37n	1	known	missense	c.983	p.H328P	1.000	pfam_Peptidase_M17_C,prints_Peptidase_M17	pfam_Peptidase_M17_C,prints_Peptidase_M17	-	no_errors	NPEPL1	HGNC	ENSG00000215440	145	0	0	104	22	17.32	-	-	-	C	57287617	A	C	57287617	3	2	67	1	0	0	0	0	1	0	0	0	10646	159	6	5	859	5	NPEPL1	20	57287617	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6510938	57287617	5737903	1311	4673										
TH1L	0	genome.wustl.edu	37	chr20	57561217	57561217	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatgcctgcataaattttccAcccgggattatatcatggaa	7	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	57561217	57561217	A	C	SNP	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	missense	c.157	p.T53P	1.000	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	186	0	0	169	21	11.05	-	-	-	C	57561217	A	C	57561217	3	2	67	1	0	0	0	0	1	0	0	0	15934	159	6	5	163	5	TH1L	20	57561217	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	273600	57561217	5464303	1312	4674										
SLCO4A1	0	genome.wustl.edu	37	chr20	61303261	61303261	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgaccaccgcccgcgcccAcccggccacggcgggcactc	11	22	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	61303261	61303261	A	C	SNP	SLCO4A1	ENST00000466961	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLCO4A1	HGNC	ENSG00000101187	46	0	0	38	9	19.15	-	-	-	C	61303261	A	C	61303261	1	2	67	0	1	0	0	0	0	0	0	0	14818	174	6	5		5	SLCO4A1	20	61303261	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3742044	61303261	1722259	1313	4675										
COL9A3	0	genome.wustl.edu	37	chr20	61472048	61472048	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccaaggagccgtgttaggAggggtcggggagaaatcagg	19	6	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	61472048	61472048	A	G	SNP	COL9A3	ENST00000343916	human	ensembl	69_37n	1	known	silent	c.2019	p.G673	0.072	NULL	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	50	0	0	26	5	16.13	-	-	-	G	61472048	A	G	61472048	2	3	67	1	0	0	0	0	0	0	0	1	3739	291	11	5		5	COL9A3	20	61472048	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	168787	61472048	1553472	1314	4676										
NKAIN4	0	genome.wustl.edu	37	chr20	61880297	61880297	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaacacagctcccgggcacAcctgcttgcatccagccccc	8	19	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	61880297	61880297	A	C	SNP	NKAIN4	ENST00000472670	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NKAIN4	HGNC	ENSG00000101198	30	0	0	19	5	20	-	-	-	C	61880297	A	C	61880297	1	2	67	0	1	0	0	0	0	0	0	0	10510	174	6	5		5	NKAIN4	20	61880297	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	408249	61880297	1145223	1315	4677										
CHRNA4	0	genome.wustl.edu	37	chr20	61981886	61981886	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtggacgggatgatctcggTgatgagcagcaggaagacgg	19	6	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	61981886	61981886	T	G	SNP	CHRNA4	ENST00000370263	human	ensembl	69_37n	-1	known	missense	c.877	p.T293P	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	297	0	0	170	25	12.76	-	-	-	G	61981886	T	G	61981886	3	3	67	1	0	0	0	0	1	0	0	0	3414	1696	59	5	1014	5	CHRNA4	20	61981886	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	101589	61981886	1043634	1316	4678										
MYT1	0	genome.wustl.edu	37	chr20	62859271	62859271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccctcgtgcaaagaaaagTggagtcaaggtggcacccac	12	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	20	62859271	62859271	T	G	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.2703	p.S901R	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	220	1	0.45	140	18	11.32	-	-	-	G	62859271	T	G	62859271	3	3	67	1	0	0	0	0	1	0	0	0	10178	1693	59	5	2684	5	MYT1	20	62859271	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	877385	62859271	166249	1317	4679										
CCT8	0	genome.wustl.edu	37	chr21	30428850	30428850	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccacttggaggcttgggcccAccagctggttttgccatgat	12	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	30428850	30428850	A	C	SNP	CCT8	ENST00000432178	human	ensembl	69_37n	-1	putative	missense	c.268	p.W90G	1.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCT8	HGNC	ENSG00000156261	142	1	0.69	156	32	17.02	-	-	-	C	30428850	A	C	30428850	3	2	67	1	0	0	0	0	1	0	0	0	2989	146	6	5	57	5	CCT8	21	30428850	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		30428850	17701045	1318	4680										
KRTAP6-3	0	genome.wustl.edu	37	chr21	31964848	31964848	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatgggtgctgtggctacggAggcctgggctgtggttatgg	19	6	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	31964848	31964848	A	G	SNP	KRTAP6-3	ENST00000391624	human	ensembl	69_37n	1	known	silent	c.63	p.G21	1.000	NULL	NULL	-	no_errors	KRTAP6-3	HGNC	ENSG00000212938	411	2	0.48	402	49	10.86	-	-	-	G	31964848	A	G	31964848	2	3	67	1	0	0	0	0	0	0	0	1	8625	291	11	5		5	KRTAP6-3	21	31964848	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1535998	31964848	16165047	1319	4681										
TIAM1	0	genome.wustl.edu	37	chr21	32624467	32624467	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtagtggccccttcaatcccActgtctgcaaactcactgcc	7	16	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	32624467	32624467	A	C	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.1002	p.S334R	0.883	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	73	0	0	63	9	12.5	-	-	-	C	32624467	A	C	32624467	3	2	67	1	0	0	0	0	1	0	0	0	15985	156	6	5	3869	5	TIAM1	21	32624467	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	659619	32624467	15505428	1320	4682										
C21orf59	0	genome.wustl.edu	37	chr21	33975560	33975560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctcagctccttggctgcccAccacagctgcgcctctgcct	8	19	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	33975560	33975560	A	C	SNP	C21orf59	ENST00000290155	human	ensembl	69_37n	-1	known	missense	c.577	p.W193G	1.000	pfam_DUF2870	pfam_DUF2870	-	no_errors	C21orf59	HGNC	ENSG00000159079	144	0	0	191	27	12.39	-	-	-	C	33975560	A	C	33975560	3	2	67	1	0	0	0	0	1	0	0	0	2150	159	6	5	307	5	C21orf59	21	33975560	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1351093	33975560	14154335	1321	4683										
CBR1	0	genome.wustl.edu	37	chr21	37444933	37444933	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccagcagcgcatacggggTgacgaagattggcgtcaccg	15	12	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	37444933	37444933	T	G	SNP	CBR1	ENST00000290349	human	ensembl	69_37n	1	known	missense	c.587	p.V196G	0.851	prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR1	HGNC	ENSG00000159228	135	0	0	67	13	16.25	-	-	-	G	37444933	T	G	37444933	3	3	67	1	0	0	0	0	1	0	0	0	2733	1696	59	5	597	5	CBR1	21	37444933	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3469373	37444933	10684962	1322	4684										
CHAF1B	0	genome.wustl.edu	37	chr21	37785375	37785375	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacccagaccggtagagggaAcccctgccagcagaacccaa	11	15	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	37785375	37785375	A	C	SNP	CHAF1B	ENST00000314103	human	ensembl	69_37n	1	known	missense	c.1255	p.T419P	0.069	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	-	no_errors	CHAF1B	HGNC	ENSG00000159259	103	0	0	45	10	18.18	-	-	-	C	37785375	A	C	37785375	3	2	67	1	0	0	0	0	1	0	0	0	3341	43	2	5	1297	5	CHAF1B	21	37785375	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	340442	37785375	10344520	1323	4685										
CLDN14	0	genome.wustl.edu	37	chr21	37833355	37833355	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgtctttgtaggcagctggTggctggtaggcaggtgcggt	18	6	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	37833355	37833355	T	G	SNP	CLDN14	ENST00000342108	human	ensembl	69_37n	-1	known	silent	c.639	p.P213	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14,prints_Claudin,prints_Claudin2	-	no_errors	CLDN14	HGNC	ENSG00000159261	140	1	0.71	188	39	17.18	-	-	-	G	37833355	T	G	37833355	2	3	67	1	0	0	0	0	0	0	0	1	3505	1683	59	5		5	CLDN14	21	37833355	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	47980	37833355	10296540	1324	4686										
SIM2	0	genome.wustl.edu	37	chr21	38117439	38117439	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctggtgccaagctacgaaggTgggtcaggtctgctcgtggg	17	9	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	38117439	38117439	T	G	SNP	SIM2	ENST00000290399	human	ensembl	69_37n	1	known	splice_site	c.1576+2	e10+2	1.000	-	-	-	no_errors	SIM2	HGNC	ENSG00000159263	73	0	0	37	9	19.57	-	-	-	G	38117439	T	G	38117439	5	3	67	1	0	0	0	0	0	0	1	0	14413	1710	59	5	1616	5	SIM2	21	38117439	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	284084	38117439	10012456	1325	4687										
DSCAM	0	genome.wustl.edu	37	chr21	41465716	41465716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggctgaagtaacagccaccAcccagacgctgtactgacga	10	14	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	41465716	41465716	A	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.3782	p.V1261G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	130	0	0	79	22	21.78	-	-	-	C	41465716	A	C	41465716	3	2	67	1	0	0	0	0	1	0	0	0	4803	159	6	5	2308	5	DSCAM	21	41465716	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3348277	41465716	6664179	1326	4688										
SLC37A1	0	genome.wustl.edu	37	chr21	43985952	43985952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacagctctacatcttctccAccgtcagcaagatggggctt	8	14	4	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	43985952	43985952	A	C	SNP	SLC37A1	ENST00000352133	human	ensembl	69_37n	1	known	missense	c.1237	p.T413P	0.259	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190	98	0	0	91	14	13.33	-	-	-	C	43985952	A	C	43985952	3	2	67	1	0	0	0	0	1	0	0	0	14686	159	6	5	1291	5	SLC37A1	21	43985952	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2520236	43985952	4143943	1327	4689										
LSS	0	genome.wustl.edu	37	chr21	47611025	47611025	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtaggcatgttctcaggggTggccagcaagggctctctca	15	10	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	47611025	47611025	T	G	SNP	LSS	ENST00000356396	human	ensembl	69_37n	-1	known	missense	c.2192	p.H731P	0.000	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285	145	1	0.68	87	12	12.12	-	-	-	G	47611025	T	G	47611025	3	3	67	1	0	0	0	0	1	0	0	0	9131	1696	59	5	10	5	LSS	21	47611025	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3625073	47611025	518870	1328	4690										
LSS	0	genome.wustl.edu	37	chr21	47647420	47647420	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggccaggatcccaagggTgatccagggtggccatacca	14	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	21	47647420	47647420	T	G	SNP	LSS	ENST00000472272	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSS	HGNC	ENSG00000160285	99	1	0.98	73	25	25.51	-	-	-	G	47647420	T	G	47647420	1	3	67	0	1	0	0	0	0	0	0	0	9131	1711	59	5		5	LSS	21	47647420	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	36395	47647420	482475	1329	4691										
GAB4	0	genome.wustl.edu	37	chr22	17449245	17449245	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggccggctggcattccctccAccatgctgggtgtacttgcc	12	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	17449245	17449245	A	C	SNP	GAB4	ENST00000400588	human	ensembl	69_37n	-1	known	silent	c.966	p.G322	0.004	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568	181	1	0.55	95	15	13.51	-	-	-	C	17449245	A	C	17449245	2	2	67	1	0	0	0	0	0	0	0	1	6200	146	6	5		5	GAB4	22	17449245	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09		17449245	33855321	1330	4692										
MICAL3	0	genome.wustl.edu	37	chr22	18301616	18301616	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggtaggggatgggacagTggcctcggtggaaggctggg	22	6	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	18301616	18301616	T	G	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.3811	p.T1271P	0.941	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	34	0	0	32	8	20	-	-	-	G	18301616	T	G	18301616	3	3	67	1	0	0	0	0	1	0	0	0	9642	1696	59	5	2225	5	MICAL3	22	18301616	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	852371	18301616	33002950	1331	4693										
DGCR6	0	genome.wustl.edu	37	chr22	18898474	18898474	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctggagctggaccggaaggTggctgaccagcagagcacac	15	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	18898474	18898474	T	G	SNP	DGCR6	ENST00000331444	human	ensembl	69_37n	1	known	missense	c.446	p.V149G	1.000	pfam_DGCR6	pfam_DGCR6	-	no_errors	DGCR6	HGNC	ENSG00000183628	132	1	0.74	60	15	20	-	-	-	G	18898474	T	G	18898474	3	3	67	1	0	0	0	0	1	0	0	0	4498	1696	59	5	460	5	DGCR6	22	18898474	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	596858	18898474	32406092	1332	4694										
DGCR14	0	genome.wustl.edu	37	chr22	19130243	19130243	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacagggtcctcatacagggTggcgggggctcccgggacat	16	12	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	19130243	19130243	T	G	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	silent	c.300	p.P100	0.233	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	65	0	0	71	19	20.65	-	-	-	G	19130243	T	G	19130243	2	3	67	1	0	0	0	0	0	0	0	1	4496	1683	59	5		5	DGCR14	22	19130243	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	231769	19130243	32174323	1333	4695										
CDC45	0	genome.wustl.edu	37	chr22	19484919	19484919	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttccttacagtcagccatggTgatgtttgagctggcttgga	12	8	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	19484919	19484919	T	G	SNP	CDC45	ENST00000437685	human	ensembl	69_37n	1	known	missense	c.698	p.V233G	1.000	pfam_CDC45	pfam_CDC45	-	no_errors	CDC45	HGNC	ENSG00000093009	153	1	0.64	151	19	11.05	-	-	-	G	19484919	T	G	19484919	3	3	67	1	0	0	0	0	1	0	0	0	3110	1696	59	5	732	5	CDC45	22	19484919	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	354676	19484919	31819647	1334	4696										
TXNRD2	0	genome.wustl.edu	37	chr22	19870889	19870889	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtagatgtggggcacagaggTggcttcccgggagtccacca	16	10	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	19870889	19870889	T	G	SNP	TXNRD2	ENST00000535882	human	ensembl	69_37n	-1	known	missense	c.1042	p.T348P	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	206	0	0	165	24	12.63	-	-	-	G	19870889	T	G	19870889	3	3	67	1	0	0	0	0	1	0	0	0	16905	1696	59	5	553	5	TXNRD2	22	19870889	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	385970	19870889	31433677	1335	4697										
PI4KA	0	genome.wustl.edu	37	chr22	21119462	21119462	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggctccttgctgggaaaggTgagcaagggggacttagtgg	18	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	21119462	21119462	T	G	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.2500	p.T834P	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	141	0	0	85	13	13.27	-	-	-	G	21119462	T	G	21119462	3	3	67	1	0	0	0	0	1	0	0	0	11947	1696	59	5	3948	5	PI4KA	22	21119462	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1248573	21119462	30185104	1336	4698										
RIMBP3B	0	genome.wustl.edu	37	chr22	21742772	21742772	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcacctgccttctgtggcccAcctcgaggactttcaggggc	12	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	21742772	21742772	A	C	SNP	RIMBP3B	ENST00000434111	human	ensembl	69_37n	1	known	missense	c.4625	p.H1542P	0.099	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	RIMBP3B	HGNC	ENSG00000196934	255	1	0.39	239	31	11.36	-	-	-	C	21742772	A	C	21742772	3	2	67	1	0	0	0	0	1	0	0	0	13449	159	6	5	4627	5	RIMBP3B	22	21742772	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	623310	21742772	29561794	1337	4699										
RGL4	0	genome.wustl.edu	37	chr22	24039360	24039360	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cacccctccttggcacagggTgtggtccccttcctggggga	13	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	24039360	24039360	T	G	SNP	RGL4	ENST00000452208	human	ensembl	69_37n	1	novel	missense	c.208	p.C70G	0.145	superfamily_Ras_GEF_dom	superfamily_Ras_GEF_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RGL4	HGNC	ENSG00000159496	99	1	0.99	68	18	20.69	-	-	-	G	24039360	T	G	24039360	3	3	67	1	0	0	0	0	1	0	0	0	13362	1683	59	5	1194	5	RGL4	22	24039360	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2296588	24039360	27265206	1338	4700										
MMP11	0	genome.wustl.edu	37	chr22	24124572	24124572	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagggactactggcgtttccAccccagcacccggcgtgtag	12	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	24124572	24124572	A	C	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	1	known	missense	c.1235	p.H412P	0.994	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	58	0	0	26	11	29.73	-	-	-	C	24124572	A	C	24124572	3	2	67	1	0	0	0	0	1	0	0	0	9721	159	6	5	1261	5	MMP11	22	24124572	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	85212	24124572	27179994	1339	4701										
TMEM211	0	genome.wustl.edu	37	chr22	25331450	25331450	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atagcagtcatgtaaccccaAcccagccggcacttcccacc	6	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	25331450	25331450	A	C	SNP	TMEM211	ENST00000423535	human	ensembl	69_37n	-1	known	silent	c.453	p.G151	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	TMEM211	HGNC	ENSG00000206069	102	1	0.97	74	16	17.58	-	-	-	C	25331450	A	C	25331450	2	2	67	1	0	0	0	0	0	0	0	1	16230	30	2	5		5	TMEM211	22	25331450	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1206878	25331450	25973116	1340	4702										
MYO18B	0	genome.wustl.edu	37	chr22	26173713	26173713	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcaggtcctggaacacctggTggggatggcaggcagtgtgg	19	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	26173713	26173713	T	G	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.2033	p.V678G	0.992	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	127	0	0	186	26	12.09	-	-	-	G	26173713	T	G	26173713	3	3	67	1	0	0	0	0	1	0	0	0	10138	1696	59	5	2059	5	MYO18B	22	26173713	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	842263	26173713	25130853	1341	4703										
MYO18B	0	genome.wustl.edu	37	chr22	26224840	26224840	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agggcaaggaccgggcggccAcctttgaggagctgtgccac	16	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	26224840	26224840	A	C	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.2884	p.T962P	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	133	1	0.74	133	21	13.46	-	-	-	C	26224840	A	C	26224840	3	2	67	1	0	0	0	0	1	0	0	0	10138	159	6	5	2938	5	MYO18B	22	26224840	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	51127	26224840	25079726	1342	4704										
MYO18B	0	genome.wustl.edu	37	chr22	26299635	26299635	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctcacagctgaagcagcaggTggagatgctacaggaccata	12	10	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	26299635	26299635	T	G	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.4985	p.V1662G	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	145	0	0	82	19	18.81	-	-	-	G	26299635	T	G	26299635	3	3	67	1	0	0	0	0	1	0	0	0	10138	1696	59	5	5103	5	MYO18B	22	26299635	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	74795	26299635	25004931	1343	4705										
ASPHD2	0	genome.wustl.edu	37	chr22	26829825	26829825	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gttatcacgtgggcagggagCagccccggccctacgtctcc	13	15	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	26829825	26829825	C	A	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	missense	c.244	p.Q82K	1.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	53	0	0	33	7	17.5	-	-	-	A	26829825	C	A	26829825	3	1	67	1	0	0	0	0	1	0	0	0	1059	711	25	4	246	4	ASPHD2	22	26829825	Missense_Mutation	SNP	C	TCGA-A2-A0T5-01A-21D-A099-09	530190	26829825	24474741	1344	4706										
ZNRF3	0	genome.wustl.edu	37	chr22	29439324	29439324	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agacccgctcaagaggccggTggtgtatgtgaagggtgcag	17	8	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	29439324	29439324	T	G	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	missense	c.539	p.V180G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	132	0	0	57	12	16.9	-	-	-	G	29439324	T	G	29439324	3	3	67	1	0	0	0	0	1	0	0	0	18306	1696	59	5	249	5	ZNRF3	22	29439324	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	2609499	29439324	21865242	1345	4707										
AP1B1	0	genome.wustl.edu	37	chr22	29736711	29736711	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	accgaggaggtggccaggggTgggccgctcactggggggcc	21	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	29736711	29736711	T	G	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.1932	p.P644	0.800	pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	30	0	0	33	7	17.5	-	-	-	G	29736711	T	G	29736711	2	3	67	1	0	0	0	0	0	0	0	1	732	1683	59	5		5	AP1B1	22	29736711	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	297387	29736711	21567855	1346	4708										
NEFH	0	genome.wustl.edu	37	chr22	29886250	29886250	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaggctccaaagcccaaggTggaggagaagaaggaacctg	16	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	29886250	29886250	T	G	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.2621	p.V874G	0.000	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	279	1	0.35	86	19	18.1	-	-	-	G	29886250	T	G	29886250	3	3	67	1	0	0	0	0	1	0	0	0	10386	1696	59	5	2635	5	NEFH	22	29886250	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	149539	29886250	21418316	1347	4709										
THOC5	0	genome.wustl.edu	37	chr22	29908076	29908076	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aaacagagctggaaaacaggTgggatggaggagtagccagg	17	5	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	29908076	29908076	T	G	SNP	THOC5	ENST00000397871	human	ensembl	69_37n	-1	known	silent	c.1731	p.P577	0.972	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	180	0	0	212	27	11.25	-	-	-	G	29908076	T	G	29908076	2	3	67	1	0	0	0	0	0	0	0	1	15963	1683	59	5		5	THOC5	22	29908076	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	21826	29908076	21396490	1348	4710										
NF2	0	genome.wustl.edu	37	chr22	30051650	30051650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tactgcttggtacgcagagcAccgaggccgagccaggtgag	15	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	30051650	30051650	A	C	SNP	NF2	ENST00000338641	human	ensembl	69_37n	1	known	missense	c.584	p.H195P	1.000	pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,prints_Tropomyosin,pfscan_FERM_domain	-	no_errors	NF2	HGNC	ENSG00000186575	191	1	0.52	147	27	15.43	-	-	-	C	30051650	A	C	30051650	3	2	67	1	0	0	0	0	1	0	0	0	10429	159	6	5	606	5	NF2	22	30051650	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	143574	30051650	21252916	1349	4711										
MTMR3	0	genome.wustl.edu	37	chr22	30413991	30413991	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccctgcccatccccaaccAcccctgtggacgacagctgt	8	19	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	30413991	30413991	A	C	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.1750	p.T584P	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	85	0	0	76	21	21.65	-	-	-	C	30413991	A	C	30413991	3	2	67	1	0	0	0	0	1	0	0	0	10017	159	6	5	1804	5	MTMR3	22	30413991	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	362341	30413991	20890575	1350	4712										
SMTN	0	genome.wustl.edu	37	chr22	31486952	31486952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tcctgttccttctagagtccAccccccttgccagcggacct	7	18	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	31486952	31486952	A	C	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	missense	c.943	p.T315P	0.787	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	117	0	0	138	23	14.2	-	-	-	C	31486952	A	C	31486952	3	2	67	1	0	0	0	0	1	0	0	0	14903	159	6	5	977	5	SMTN	22	31486952	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1072961	31486952	19817614	1351	4713										
DEPDC5	0	genome.wustl.edu	37	chr22	32198762	32198762	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtggtgatcacgcccggggTgggtgtctttgaagtggacc	17	8	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	32198762	32198762	T	G	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.1019	p.V340G	1.000	pfam_DUF3608	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	258	1	0.39	232	31	11.74	-	-	-	G	32198762	T	G	32198762	3	3	67	1	0	0	0	0	1	0	0	0	4478	1696	59	5	1073	5	DEPDC5	22	32198762	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	711810	32198762	19105804	1352	4714										
DEPDC5	0	genome.wustl.edu	37	chr22	32289637	32289637	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaccgcacagaccggctggAgtggtgcagctgttattacc	12	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	32289637	32289637	A	G	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.4037	p.E1346G	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	200	0	0	103	20	16.26	-	-	-	G	32289637	A	G	32289637	3	3	67	1	0	0	0	0	1	0	0	0	4478	304	11	5	4244	5	DEPDC5	22	32289637	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	90875	32289637	19014929	1353	4715										
C22orf28	0	genome.wustl.edu	37	chr22	32793942	32793942	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atatacctgtggctacttggTggcccaagcctctgcttcca	9	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	32793942	32793942	T	G	SNP	C22orf28	ENST00000216038	human	ensembl	69_37n	-1	known	missense	c.800	p.H267P	1.000	pfam_RtcB_family,superfamily_RtcB_family	pfam_RtcB_family,superfamily_RtcB_family	-	no_errors	C22orf28	HGNC	ENSG00000100220	166	1	0.6	145	25	14.62	-	-	-	G	32793942	T	G	32793942	3	3	67	1	0	0	0	0	1	0	0	0	2160	1696	59	5	741	5	C22orf28	22	32793942	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	504305	32793942	18510624	1354	4716										
LARGE	0	genome.wustl.edu	37	chr22	34022256	34022256	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggacggatttgaccagggTgacgacatcccggctggcat	14	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	34022256	34022256	T	G	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.463	p.T155P	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	170	1	0.58	109	19	14.84	-	-	-	G	34022256	T	G	34022256	3	3	67	1	0	0	0	0	1	0	0	0	8681	1696	59	5	1855	5	LARGE	22	34022256	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1228314	34022256	17282310	1355	4717										
HMGXB4	0	genome.wustl.edu	37	chr22	35661298	35661298	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggggaactagaggctggggAgttagtgatagatgattctt	16	3	1	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	35661298	35661298	A	G	SNP	HMGXB4	ENST00000216106	human	ensembl	69_37n	1	known	missense	c.917	p.E306G	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	174	1	0.57	92	16	14.81	-	-	-	G	35661298	A	G	35661298	3	3	67	1	0	0	0	0	1	0	0	0	7290	304	11	5	931	5	HMGXB4	22	35661298	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1639042	35661298	15643268	1356	4718										
MCM5	0	genome.wustl.edu	37	chr22	35811871	35811871	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agctggactgacagcctcggTgatgagggacccttcgtccc	13	13	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	35811871	35811871	T	G	SNP	MCM5	ENST00000216122	human	ensembl	69_37n	1	known	missense	c.1253	p.V418G	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_5,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297	133	1	0.73	107	18	14.06	-	-	-	G	35811871	T	G	35811871	3	3	67	1	0	0	0	0	1	0	0	0	9461	1696	59	5	1287	5	MCM5	22	35811871	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	150573	35811871	15492695	1357	4719										
MYH9	0	genome.wustl.edu	37	chr22	36692887	36692887	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgggcaggcggggtcctcAcctggccagggcggcctgga	20	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	36692887	36692887	A	C	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	splice_site	c.3272+2	e24+2	1.000	-	-	-	no_errors	MYH9	HGNC	ENSG00000100345	58	0	0	41	8	16.33	-	-	-	C	36692887	A	C	36692887	5	2	67	1	0	0	0	0	0	0	1	0	10114	173	6	5	2676	5	MYH9	22	36692887	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	881016	36692887	14611679	1358	4720										
TRIOBP	0	genome.wustl.edu	37	chr22	38119536	38119536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acacccctagggcctcatccAcccaagaggacacccccagg	8	19	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38119536	38119536	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.973	p.T325P	0.004	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	218	2	0.9	179	32	14.95	-	-	-	C	38119536	A	C	38119536	3	2	67	1	0	0	0	0	1	0	0	0	16649	159	6	5	991	5	TRIOBP	22	38119536	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1426649	38119536	13185030	1359	4721										
TRIOBP	0	genome.wustl.edu	37	chr22	38119548	38119548	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcatccacccaagaggacAcccccagggcctcatctaca	6	19	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38119548	38119548	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.985	p.T329P	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	215	1	0.46	168	30	15.08	-	-	-	C	38119548	A	C	38119548	3	2	67	1	0	0	0	0	1	0	0	0	16649	159	6	5	1003	5	TRIOBP	22	38119548	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	12	38119548	13185018	1360	4722										
TRIOBP	0	genome.wustl.edu	37	chr22	38119578	38119578	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcatctacacagtggaacAcccccagagcttcctctccc	5	19	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38119578	38119578	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.1015	p.T339P	0.005	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	205	2	0.97	153	20	11.56	-	-	-	C	38119578	A	C	38119578	3	2	67	1	0	0	0	0	1	0	0	0	16649	159	6	5	1033	5	TRIOBP	22	38119578	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	30	38119578	13184988	1361	4723										
TRIOBP	0	genome.wustl.edu	37	chr22	38121721	38121721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccctgagagtgaaccgccccAccacgagcctccctatatac	7	18	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38121721	38121721	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.3158	p.H1053P	0.962	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	76	0	0	77	17	17.71	-	-	-	C	38121721	A	C	38121721	3	2	67	1	0	0	0	0	1	0	0	0	16649	159	6	5	3176	5	TRIOBP	22	38121721	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2143	38121721	13182845	1362	4724										
MICALL1	0	genome.wustl.edu	37	chr22	38327875	38327875	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccccagccacaaagaaggccAccaagggatccaagccagtg	10	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38327875	38327875	A	C	SNP	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	missense	c.1951	p.T651P	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	113	0	0	63	14	18.18	-	-	-	C	38327875	A	C	38327875	3	2	67	1	0	0	0	0	1	0	0	0	9644	159	6	5	1989	5	MICALL1	22	38327875	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	206154	38327875	12976691	1363	4725										
MICALL1	0	genome.wustl.edu	37	chr22	38327901	38327901	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggatccaagccagtgaggccAcctgcccctggacacggctt	12	15	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38327901	38327901	A	C	SNP	MICALL1	ENST00000454685	human	ensembl	69_37n	1	putative	missense	c.703	p.T235P	0.818	NULL	pfam_DUF3585	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MICALL1	HGNC	ENSG00000100139	109	1	0.91	65	18	21.18	-	-	-	C	38327901	A	C	38327901	3	2	67	1	0	0	0	0	1	0	0	0	9644	146	6	5	2015	5	MICALL1	22	38327901	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	26	38327901	12976665	1364	4726										
SOX10	0	genome.wustl.edu	37	chr22	38369836	38369836	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccccgcggtctctgtcttcAcctgggctttggcatccaca	10	16	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38369836	38369836	A	C	SNP	SOX10	ENST00000360880	human	ensembl	69_37n	-1	known	missense	c.1067	p.V356G	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX10	HGNC	ENSG00000100146	129	0	0	98	20	16.81	-	-	-	C	38369836	A	C	38369836	3	2	67	1	0	0	0	0	1	0	0	0	15030	159	6	5	337	5	SOX10	22	38369836	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	41935	38369836	12934730	1365	4727										
KCNJ4	0	genome.wustl.edu	37	chr22	38823993	38823993	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagcgcgtgtccacgcaggTggtgaagatgtccgccatgt	14	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	38823993	38823993	T	G	SNP	KCNJ4	ENST00000303592	human	ensembl	69_37n	-1	known	missense	c.145	p.T49P	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135	108	1	0.89	92	24	20.69	-	-	-	G	38823993	T	G	38823993	3	3	67	1	0	0	0	0	1	0	0	0	8107	1696	59	5	1196	5	KCNJ4	22	38823993	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	454157	38823993	12480573	1366	4728										
CACNA1I	0	genome.wustl.edu	37	chr22	40061535	40061535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggcgccgggcctgaagctggTggtggagacactcatctcct	15	12	2	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	40061535	40061535	T	G	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	missense	c.3902	p.V1301G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	138	0	0	144	23	13.69	-	-	-	G	40061535	T	G	40061535	3	3	67	1	0	0	0	0	1	0	0	0	2571	1696	59	5	3970	5	CACNA1I	22	40061535	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1237542	40061535	11243031	1367	4729										
TNRC6B	0	genome.wustl.edu	37	chr22	40708598	40708598	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggaagtgtgctggggggtAcagccacatctcccattgta	13	10	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	40708598	40708598	A	C	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.4525	p.T1509P	0.940	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	71	0	0	50	15	23.08	-	-	-	C	40708598	A	C	40708598	3	2	67	1	0	0	0	0	1	0	0	0	16436	391	14	5	4716	5	TNRC6B	22	40708598	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	647063	40708598	10595968	1368	4730										
EP300	0	genome.wustl.edu	37	chr22	41573243	41573243	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcggactggtgtggttgggcAgcaacagggcctcccttccc	15	13	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	41573243	41573243	A	C	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.5528	p.Q1843P	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	78	0	0	35	17	32.69	-	-	-	C	41573243	A	C	41573243	3	2	67	1	0	0	0	0	1	0	0	0	5185	188	7	5	5650	5	EP300	22	41573243	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	864645	41573243	9731323	1369	4731										
POLR3H	0	genome.wustl.edu	37	chr22	41940092	41940092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggacggtgtccaccatttccAccaggacgaacatcccggcc	10	16	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	41940092	41940092	A	C	SNP	POLR3H	ENST00000355209	human	ensembl	69_37n	-1	known	missense	c.14	p.V5G	1.000	superfamily_RNA_pol_Rpb7_N,tigrfam_RNAP_E/RPC8	pfam_RNA_pol_III_Rbc25,pfam_RNA_pol_Rpb7_N,superfamily_RNA_pol_Rpb7_N,superfamily_NA-bd_OB-fold-like,tigrfam_RNAP_E/RPC8	-	no_errors	POLR3H	HGNC	ENSG00000100413	38	0	0	39	11	22	-	-	-	C	41940092	A	C	41940092	3	2	67	1	0	0	0	0	1	0	0	0	12310	159	6	5	624	5	POLR3H	22	41940092	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	366849	41940092	9364474	1370	4732										
EFCAB6	0	genome.wustl.edu	37	chr22	43924730	43924730	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgctgggcacacagcaggggTgtctactggaggaatgcccg	16	11	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	43924730	43924730	T	G	SNP	EFCAB6	ENST00000461800	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB6	HGNC	ENSG00000186976	245	1	0.4	119	33	21.43	-	-	-	G	43924730	T	G	43924730	1	3	67	0	1	0	0	0	0	0	0	0	4974	1711	59	5		5	EFCAB6	22	43924730	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1984638	43924730	7379836	1371	4733										
CELSR1	0	genome.wustl.edu	37	chr22	46930439	46930439	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggatgaggatctctagggTggtggtgtctgatttctgcg	17	5	3	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	46930439	46930439	T	G	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.2629	p.T877P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	47	0	0	44	22	33.33	-	-	-	G	46930439	T	G	46930439	3	3	67	1	0	0	0	0	1	0	0	0	3250	1696	59	5	6555	5	CELSR1	22	46930439	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3005709	46930439	4374127	1372	4734										
ALG12	0	genome.wustl.edu	37	chr22	50301450	50301450	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtagctccttgtgtggcaggAgggagtagagtgccatgaag	17	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	50301450	50301450	A	G	SNP	ALG12	ENST00000330817	human	ensembl	69_37n	-1	known	missense	c.911	p.L304P	0.483	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858	110	1	0.9	71	14	16.47	-	-	-	G	50301450	A	G	50301450	3	3	67	1	0	0	0	0	1	0	0	0	514	304	11	5	571	5	ALG12	22	50301450	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3371011	50301450	1003116	1373	4735										
ALG12	0	genome.wustl.edu	37	chr22	50302935	50302935	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggacagtgttgtaccaaagcAcctttccttccggccaagtg	10	12	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	22	50302935	50302935	A	C	SNP	ALG12	ENST00000330817	human	ensembl	69_37n	-1	known	missense	c.725	p.V242G	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858	156	0	0	93	22	19.13	-	-	-	C	50302935	A	C	50302935	3	2	67	1	0	0	0	0	1	0	0	0	514	159	6	5	761	5	ALG12	22	50302935	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1485	50302935	1001631	1374	4736										
PLCXD1	0	genome.wustl.edu	37	chrX	207349	207349	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agagcagctggatgccggggTgcggtacctggacctgcgga	18	10	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	207349	207349	T	G	SNP	PLCXD1	ENST00000381657	human	ensembl	69_37n	1	known	missense	c.299	p.V100G	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378	260	1	0.38	165	22	11.52	-	-	-	G	207349	T	G	207349	3	3	67	1	0	0	0	0	1	0	0	0	12115	1696	59	5	309	5	PLCXD1	23	207349	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09		207349	155063211	1375	4737										
IL3RA	0	genome.wustl.edu	37	chrX	1501285	1501285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cctcctctcgtctctgcaggTggtctgggaggcgggcaaag	15	12	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	1501285	1501285	T	G	SNP	IL3RA	ENST00000331035	human	ensembl	69_37n	1	known	missense	c.1064	p.V355G	0.085	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291	319	1	0.31	275	39	12.34	-	-	-	G	1501285	T	G	1501285	3	3	67	1	0	0	0	0	1	0	0	0	7749	1710	59	5	1106	5	IL3RA	23	1501285	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1293936	1501285	153769275	1376	4738										
ASMTL	0	genome.wustl.edu	37	chrX	1536955	1536955	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgggaggtcaaacacagtcAcctgcatacgagggtactca	11	11	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	1536955	1536955	A	C	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	missense	c.1433	p.V478G	0.993	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	261	1	0.38	182	24	11.59	-	-	-	C	1536955	A	C	1536955	3	2	67	1	0	0	0	0	1	0	0	0	1050	159	6	5	444	5	ASMTL	23	1536955	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	35670	1536955	153733605	1377	4739										
CD99	0	genome.wustl.edu	37	chrX	2638451	2638451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccaaatccaaaccccaaccAccctagttcctccggtaaga	5	17	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	2638451	2638451	A	C	SNP	CD99	ENST00000381192	human	ensembl	69_37n	1	known	missense	c.248	p.H83P	0.002	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	773	2	0.26	699	95	11.93	-	-	-	C	2638451	A	C	2638451	3	2	67	1	0	0	0	0	1	0	0	0	3079	159	6	5	266	5	CD99	23	2638451	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1101496	2638451	152632109	1378	4740										
GYG2	0	genome.wustl.edu	37	chrX	2779637	2779637	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gagccgtgtgaaaattcaacAcccagtgcgggcgtgccgtg	14	11	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	2779637	2779637	A	C	SNP	GYG2	ENST00000381157	human	ensembl	69_37n	1	novel	missense	c.460	p.T154P	0.000	NULL	pfam_Glyco_trans_8	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GYG2	HGNC	ENSG00000056998	159	1	0.62	105	20	15.87	-	-	-	C	2779637	A	C	2779637	3	2	67	1	0	0	0	0	1	0	0	0	6957	146	6	5	1035	5	GYG2	23	2779637	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	141186	2779637	152490923	1379	4741										
PRKX	0	genome.wustl.edu	37	chrX	3592657	3592657	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acagcctgatgaggaacgggTggctgacttccttcaggaca	13	10	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	3592657	3592657	T	G	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.317	p.H106P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	346	1	0.29	144	17	10.56	-	-	-	G	3592657	T	G	3592657	3	3	67	1	0	0	0	0	1	0	0	0	12608	1696	59	5	787	5	PRKX	23	3592657	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	813020	3592657	151677903	1380	4742										
WWC3	0	genome.wustl.edu	37	chrX	10102555	10102555	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cggcccagccgccgggcccgAgggtcgccttttgttcggag	16	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	10102555	10102555	A	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	silent	c.2682	p.R894	0.221	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	159	0	0	143	17	10.49	-	-	-	G	10102555	A	G	10102555	2	3	67	1	0	0	0	0	0	0	0	1	17510	291	11	5		5	WWC3	23	10102555	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	6509898	10102555	145168005	1381	4743										
OFD1	0	genome.wustl.edu	37	chrX	13778450	13778450	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggtagttcccctgattctgAccttgagtttgtagccaata	10	9	1	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	13778450	13778450	A	C	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.1871	p.D624A	0.998	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	150	1	0.66	97	24	19.83	-	-	-	C	13778450	A	C	13778450	3	2	67	1	0	0	0	0	1	0	0	0	10911	275	10	5	1933	5	OFD1	23	13778450	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	3675895	13778450	141492110	1382	4744										
ACE2	0	genome.wustl.edu	37	chrX	15591571	15591571	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	catggggcacaggttccaccAccccaactatctctcgcctt	7	17	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	15591571	15591571	A	C	SNP	ACE2	ENST00000252519	human	ensembl	69_37n	-1	known	missense	c.1460	p.V487G	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234	143	1	0.69	134	16	10.53	-	-	-	C	15591571	A	C	15591571	3	2	67	1	0	0	0	0	1	0	0	0	137	159	6	5	989	5	ACE2	23	15591571	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1813121	15591571	139678989	1383	4745										
SCML2	0	genome.wustl.edu	37	chrX	18276274	18276274	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccggcgaagcaccacattcAccgggcccgggccgaagtgg	14	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	18276274	18276274	A	C	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.1163	p.V388G	0.978	pfam_DUF3588	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	169	1	0.59	146	28	15.91	-	-	-	C	18276274	A	C	18276274	3	2	67	1	0	0	0	0	1	0	0	0	13998	159	6	5	963	5	SCML2	23	18276274	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2684703	18276274	136994286	1384	4746										
SCML2	0	genome.wustl.edu	37	chrX	18323137	18323137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atctcctgtcaggcgacaccAcccagctgggaaaatatctc	8	14	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	18323137	18323137	A	C	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.685	p.W229G	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	117	0	0	142	17	10.62	-	-	-	C	18323137	A	C	18323137	3	2	67	1	0	0	0	0	1	0	0	0	13998	159	6	5	1453	5	SCML2	23	18323137	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	46863	18323137	136947423	1385	4747										
SYTL5	0	genome.wustl.edu	37	chrX	37932904	37932904	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagaaaagtcagacacttcAcctgttgctgggaagaaggc	12	9	2	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	37932904	37932904	A	C	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	silent	c.507	p.S169	0.017	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	199	0	0	132	27	16.88	-	-	-	C	37932904	A	C	37932904	2	2	67	1	0	0	0	0	0	0	0	1	15578	146	6	5		5	SYTL5	23	37932904	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	19609767	37932904	117337656	1386	4748										
CXorf36	0	genome.wustl.edu	37	chrX	45051237	45051237	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aatcgggaggcagtccaaggTgggaagccagccagttgtca	15	9	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	45051237	45051237	T	G	SNP	CXorf36	ENST00000398000	human	ensembl	69_37n	-1	known	missense	c.257	p.H86P	0.061	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	204	1	0.49	169	21	10.94	-	-	-	G	45051237	T	G	45051237	3	3	67	1	0	0	0	0	1	0	0	0	4137	1696	59	5	1115	5	CXorf36	23	45051237	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7118333	45051237	110219323	1387	4749										
PHF16	0	genome.wustl.edu	37	chrX	46898407	46898407	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acgaagatctcccacatcccAcccagtcggtgggccttagt	9	15	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	46898407	46898407	A	C	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	silent	c.912	p.P304	0.016	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	139	1	0.71	169	42	19.72	-	-	-	C	46898407	A	C	46898407	2	2	67	1	0	0	0	0	0	0	0	1	11901	146	6	5		5	PHF16	23	46898407	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1847170	46898407	108372153	1388	4750										
WAS	0	genome.wustl.edu	37	chrX	48543987	48543987	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actcacagcttgtctactccAcccccacccccttcttccac	2	22	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48543987	48543987	A	C	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	missense	c.325	p.T109P	0.001	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	133	0	0	134	26	16.15	-	-	-	C	48543987	A	C	48543987	3	2	67	1	0	0	0	0	1	0	0	0	17348	159	6	5	335	5	WAS	23	48543987	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1645580	48543987	106726573	1389	4751										
HDAC6	0	genome.wustl.edu	37	chrX	48672897	48672897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcagggtaggttctggccccAcctgaaggcctctaactggt	13	12	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48672897	48672897	A	C	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.899	p.H300P	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	152	1	0.65	204	23	10.13	-	-	-	C	48672897	A	C	48672897	3	2	67	1	0	0	0	0	1	0	0	0	7062	159	6	5	895	5	HDAC6	23	48672897	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	128910	48672897	106597663	1390	4752										
TIMM17B	0	genome.wustl.edu	37	chrX	48751344	48751344	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgagagcaggcagaacagggTggaaggggctggggccaggg	22	6	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48751344	48751344	T	G	SNP	TIMM17B	ENST00000466995	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIMM17B	HGNC	ENSG00000126768	104	1	0.95	33	9	20.93	-	-	-	G	48751344	T	G	48751344	1	3	67	0	1	0	0	0	0	0	0	0	16004	1711	59	5		5	TIMM17B	23	48751344	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	78447	48751344	106519216	1391	4753										
SLC35A2	0	genome.wustl.edu	37	chrX	48760728	48760728	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccagcggctaggaacccttcAccttggtgagcaacctgtgg	12	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48760728	48760728	A	C	SNP	SLC35A2	ENST00000247138	human	ensembl	69_37n	-1	known	missense	c.1178	p.V393G	1.000	NULL	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100	195	0	0	133	23	14.74	-	-	-	C	48760728	A	C	48760728	3	2	67	1	0	0	0	0	1	0	0	0	14660	159	6	5	16	5	SLC35A2	23	48760728	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	9384	48760728	106509832	1392	4754										
PIM2	0	genome.wustl.edu	37	chrX	48771452	48771452	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggggcagggcctcctttggAggggttgaggggtacatcct	18	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48771452	48771452	A	G	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	missense	c.892	p.S298P	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	98	1	0.98	101	19	15.83	-	-	-	G	48771452	A	G	48771452	3	3	67	1	0	0	0	0	1	0	0	0	12002	304	11	5	47	5	PIM2	23	48771452	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	10724	48771452	106499108	1393	4755										
PIM2	0	genome.wustl.edu	37	chrX	48771839	48771839	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tccactctggggggctgtacAcccttgtccctgcacacaag	10	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	48771839	48771839	A	C	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	missense	c.605	p.V202G	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	109	1	0.91	33	12	25	-	-	-	C	48771839	A	C	48771839	3	2	67	1	0	0	0	0	1	0	0	0	12002	159	6	5	338	5	PIM2	23	48771839	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	387	48771839	106498721	1394	4756										
CACNA1F	0	genome.wustl.edu	37	chrX	49088211	49088211	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggcagaagagtgcccgaggTgaccgctgggcactggccac	16	12	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	49088211	49088211	T	G	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.204	p.S68	0.999	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	110	1	0.9	63	15	18.99	-	-	-	G	49088211	T	G	49088211	2	3	67	1	0	0	0	0	0	0	0	1	2568	1683	59	5		5	CACNA1F	23	49088211	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	316372	49088211	106182349	1395	4757										
KDM5C	0	genome.wustl.edu	37	chrX	53247612	53247612	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggctcaaagaggctggccAccccctcccactgaccacta	8	17	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	53247612	53247612	A	C	SNP	KDM5C	ENST00000495519	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.650	-	-	-	no_errors	KDM5C	HGNC	ENSG00000126012	101	0	0	146	28	15.91	-	-	-	C	53247612	A	C	53247612	1	2	67	0	1	0	0	0	0	0	0	0	8188	174	6	5		5	KDM5C	23	53247612	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4159401	53247612	102022948	1396	4758										
SMC1A	0	genome.wustl.edu	37	chrX	53430528	53430528	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgatttcattctgccgtttcAccttttcttcctcaaactcc	3	15	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	53430528	53430528	A	C	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.2390	p.V797G	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	408	2	0.48	429	59	12.07	-	-	-	C	53430528	A	C	53430528	3	2	67	1	0	0	0	0	1	0	0	0	14870	159	6	5	1355	5	SMC1A	23	53430528	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	182916	53430528	101840032	1397	4759										
RIBC1	0	genome.wustl.edu	37	chrX	53454979	53454979	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ccaggccctgaacaaccaggTgggagaccgaaagcgtcggg	15	12	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	53454979	53454979	T	G	SNP	RIBC1	ENST00000375327	human	ensembl	69_37n	1	known	missense	c.146	p.V49G	0.980	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423	251	1	0.4	238	37	13.36	-	-	-	G	53454979	T	G	53454979	3	3	67	1	0	0	0	0	1	0	0	0	13436	1696	59	5	152	5	RIBC1	23	53454979	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	24451	53454979	101815581	1398	4760										
HUWE1	0	genome.wustl.edu	37	chrX	53587267	53587267	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	actgcgcccgatgccctgggTgagacgagttgttgaagagc	15	10	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	53587267	53587267	T	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.7618	p.T2540P	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	114	1	0.86	122	17	12.06	-	-	-	G	53587267	T	G	53587267	3	3	67	1	0	0	0	0	1	0	0	0	7515	1696	59	5	5622	5	HUWE1	23	53587267	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	132288	53587267	101683293	1399	4761										
MAGED2	0	genome.wustl.edu	37	chrX	54834237	54834237	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaactcgctggaggacaaggTgaggggcgttgatattgggg	19	5	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	54834237	54834237	T	G	SNP	MAGED2	ENST00000375053	human	ensembl	69_37n	1	known	splice_site	c.1+2	e0+2	0.795	-	-	-	no_errors	MAGED2	HGNC	ENSG00000102316	93	0	0	41	14	25.45	-	-	-	G	54834237	T	G	54834237	5	3	67	1	0	0	0	0	0	0	1	0	9255	1710	59	5		5	MAGED2	23	54834237	Splice_Site	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1246970	54834237	100436323	1400	4762										
ALAS2	0	genome.wustl.edu	37	chrX	55052360	55052360	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaactggtgagtcttaaccAccttgcctaggaggcttgtg	13	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	55052360	55052360	A	C	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.74	p.V25G	0.003	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	163	0	0	114	18	13.43	-	-	-	C	55052360	A	C	55052360	3	2	67	1	0	0	0	0	1	0	0	0	485	159	6	5	1729	5	ALAS2	23	55052360	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	218123	55052360	100218200	1401	4763										
FAM104B	0	genome.wustl.edu	37	chrX	55187406	55187406	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccaccggccaacactgtcAcctgcaggtcatgagagccg	11	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	55187406	55187406	A	C	SNP	FAM104B	ENST00000477847	human	ensembl	69_37n	-1	putative	splice_site	c.11+2	e1+2	0.001	-	-	-	no_errors	FAM104B	HGNC	ENSG00000182518	90	0	0	56	17	23.29	-	-	-	C	55187406	A	C	55187406	5	2	67	1	0	0	0	0	0	0	1	0	5426	173	6	5	466	5	FAM104B	23	55187406	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	135046	55187406	100083154	1402	4764										
FAM123B	0	genome.wustl.edu	37	chrX	63410060	63410060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tctgggaggcctgtggctggAggttatagcaagggcccatg	17	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	63410060	63410060	A	G	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.3107	p.L1036P	0.001	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	119	1	0.8	58	15	20.27	-	-	-	G	63410060	A	G	63410060	3	3	67	1	0	0	0	0	1	0	0	0	5463	304	11	5	304	5	FAM123B	23	63410060	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	8222654	63410060	91860500	1403	4765										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722083	64722083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggatcctcccatttcccccAccagaaggcctctttggagc	8	16	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	64722083	64722083	A	C	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.1505	p.H502P	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	123	0	0	171	19	10	-	-	-	C	64722083	A	C	64722083	3	2	67	1	0	0	0	0	1	0	0	0	17658	159	6	5	1523	5	ZC3H12B	23	64722083	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1312023	64722083	90548477	1404	4766										
IGBP1	0	genome.wustl.edu	37	chrX	69385790	69385790	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtgggatgactggaaggacAcccatcctaggggctatggg	16	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	69385790	69385790	A	C	SNP	IGBP1	ENST00000342206	human	ensembl	69_37n	1	known	missense	c.979	p.T327P	1.000	pfam_TAP42-like	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289	290	0	0	243	40	14.08	-	-	-	C	69385790	A	C	69385790	3	2	67	1	0	0	0	0	1	0	0	0	7621	159	6	5	1001	5	IGBP1	23	69385790	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4663707	69385790	85884770	1405	4767										
GDPD2	0	genome.wustl.edu	37	chrX	69649592	69649592	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgccaggaccccctctccccAccctgccttccctaggccat	6	22	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	69649592	69649592	A	C	SNP	GDPD2	ENST00000472623	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	GDPD2	HGNC	ENSG00000130055	79	0	0	44	17	27.87	-	-	-	C	69649592	A	C	69649592	1	2	67	0	1	0	0	0	0	0	0	0	6376	174	6	5		5	GDPD2	23	69649592	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	263802	69649592	85620968	1406	4768										
GDPD2	0	genome.wustl.edu	37	chrX	69652254	69652254	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caggggtggattcggtcaccAccaacgactgccagctgctg	13	13	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	69652254	69652254	A	C	SNP	GDPD2	ENST00000453994	human	ensembl	69_37n	1	known	missense	c.1558	p.T520P	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	186	1	0.53	225	30	11.76	-	-	-	C	69652254	A	C	69652254	3	2	67	1	0	0	0	0	1	0	0	0	6376	159	6	5	1608	5	GDPD2	23	69652254	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	2662	69652254	85618306	1407	4769										
FOXO4	0	genome.wustl.edu	37	chrX	70321368	70321368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccccagcagtctggttcccAccctttctatgatagcacca	7	16	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	70321368	70321368	A	C	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	missense	c.1288	p.T430P	0.001	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	98	0	0	80	18	18.37	-	-	-	C	70321368	A	C	70321368	3	2	67	1	0	0	0	0	1	0	0	0	6073	159	6	5	1294	5	FOXO4	23	70321368	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	669114	70321368	84949192	1408	4770										
MED12	0	genome.wustl.edu	37	chrX	70352256	70352256	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcgctctggtgtatggctggTggcccccctcattgctaaac	12	13	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	70352256	70352256	T	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.4283	p.V1428G	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	210	2	0.93	159	21	11.6	-	-	-	G	70352256	T	G	70352256	3	3	67	1	0	0	0	0	1	0	0	0	9499	1696	59	5	4405	5	MED12	23	70352256	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	30888	70352256	84918304	1409	4771										
PHKA1	0	genome.wustl.edu	37	chrX	71855032	71855032	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gctgtgtgagatggggaaggTgatggtgggctggcctgtca	20	5	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	71855032	71855032	T	G	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.1687	p.T563P	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	179	0	0	132	29	18.01	-	-	-	G	71855032	T	G	71855032	3	3	67	1	0	0	0	0	1	0	0	0	11917	1696	59	5	2052	5	PHKA1	23	71855032	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1502776	71855032	83415528	1410	4772										
TSPAN6	0	genome.wustl.edu	37	chrX	99890605	99890605	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggtagcaaaacaaccaaaggTgcccaaaagaataatgacgg	10	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	99890605	99890605	T	G	SNP	TSPAN6	ENST00000373020	human	ensembl	69_37n	-1	known	missense	c.226	p.T76P	0.997	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN6	HGNC	ENSG00000000003	102	1	0.95	57	14	19.72	-	-	-	G	99890605	T	G	99890605	3	3	67	1	0	0	0	0	1	0	0	0	16747	1696	59	5	535	5	TSPAN6	23	99890605	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	28035573	99890605	55379955	1411	4773										
SYTL4	0	genome.wustl.edu	37	chrX	99934402	99934402	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tggagctctcccccttccccAcctttacctgtaagggatgt	8	15	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	99934402	99934402	A	C	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	silent	c.1572	p.G524	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	155	0	0	122	48	28.07	-	-	-	C	99934402	A	C	99934402	2	2	67	1	0	0	0	0	0	0	0	1	15577	146	6	5		5	SYTL4	23	99934402	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	43797	99934402	55336158	1412	4774										
RPL36A	0	genome.wustl.edu	37	chrX	100646780	100646780	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	aggaagcagagtggctatggTgggcaaactaagccgatttt	14	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	100646780	100646780	T	G	SNP	RPL36A	ENST00000372849	human	ensembl	69_37n	1	known	missense	c.175	p.W59G	0.989	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPL36A	HGNC	ENSG00000241343	362	3	0.82	263	36	12.04	-	-	-	G	100646780	T	G	100646780	3	3	67	1	0	0	0	0	1	0	0	0	13673	1683	59	5	157	5	RPL36A	23	100646780	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	712378	100646780	54623780	1413	4775										
HNRNPH2	0	genome.wustl.edu	37	chrX	100668170	100668170	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tatggtagccaaatgatgggAgggatgggcttatccaacca	13	7	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	100668170	100668170	A	G	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	silent	c.1194	p.G398	0.999	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	177	1	0.56	177	23	11.5	-	-	-	G	100668170	A	G	100668170	2	3	67	1	0	0	0	0	0	0	0	1	7318	291	11	5		5	HNRNPH2	23	100668170	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	21390	100668170	54602390	1414	4776										
RIPPLY1	0	genome.wustl.edu	37	chrX	106144760	106144760	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	acctcagcagccgttgccccAccagcagcctgtccaaagca	8	18	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	106144760	106144760	A	C	SNP	RIPPLY1	ENST00000276173	human	ensembl	69_37n	-1	known	silent	c.240	p.G80	0.008	NULL	NULL	-	no_errors	RIPPLY1	HGNC	ENSG00000147223	114	0	0	102	22	17.74	-	-	-	C	106144760	A	C	106144760	2	2	67	1	0	0	0	0	0	0	0	1	13470	146	6	5		5	RIPPLY1	23	106144760	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	5476590	106144760	49125800	1415	4777										
RIPPLY1	0	genome.wustl.edu	37	chrX	106145377	106145377	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggctcgaactcaccaaatccAccagcttcctcatctgcctt	5	17	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	106145377	106145377	A	C	SNP	RIPPLY1	ENST00000276173	human	ensembl	69_37n	-1	known	missense	c.224	p.V75G	0.006	NULL	NULL	-	no_errors	RIPPLY1	HGNC	ENSG00000147223	173	0	0	165	21	11.29	-	-	-	C	106145377	A	C	106145377	3	2	67	1	0	0	0	0	1	0	0	0	13470	159	6	5	243	5	RIPPLY1	23	106145377	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	617	106145377	49125183	1416	4778										
TEX13B	0	genome.wustl.edu	37	chrX	107224369	107224369	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgttctgtgacctttgctggTgaagggggtatattgggtat	15	5	1	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	107224369	107224369	T	G	SNP	TEX13B	ENST00000302917	human	ensembl	69_37n	-1	known	missense	c.880	p.T294P	0.002	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925	169	1	0.58	180	22	10.89	-	-	-	G	107224369	T	G	107224369	3	3	67	1	0	0	0	0	1	0	0	0	15872	1696	59	5	62	5	TEX13B	23	107224369	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1078992	107224369	48046191	1417	4779										
COL4A6	0	genome.wustl.edu	37	chrX	107422038	107422038	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gtcccagggctgccccgctcAcctttggggcctagtaagcc	12	16	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	107422038	107422038	A	C	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.2394	p.G798	0.995	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	132	0	0	92	19	16.96	-	-	-	C	107422038	A	C	107422038	2	2	67	1	0	0	0	0	0	0	0	1	3725	146	6	5		5	COL4A6	23	107422038	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	197669	107422038	47848522	1418	4780										
COL4A5	0	genome.wustl.edu	37	chrX	107823935	107823935	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cccccaggtggtgagaaaggTgagaagggtgagcaaggaga	18	6	0	4			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	107823935	107823935	T	G	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	silent	c.858	p.G286	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	502	4	0.79	319	37	10.39	-	-	-	G	107823935	T	G	107823935	2	3	67	1	0	0	0	0	0	0	0	1	3724	1683	59	5		5	COL4A5	23	107823935	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	401897	107823935	47446625	1419	4781										
AMOT	0	genome.wustl.edu	37	chrX	112035178	112035178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcctgctgcatcttctccAccttgtcaacgtacacttgc	8	15	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	112035178	112035178	A	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1808	p.V603G	1.000	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	173	1	0.57	208	30	12.61	-	-	-	C	112035178	A	C	112035178	3	2	67	1	0	0	0	0	1	0	0	0	582	159	6	5	1470	5	AMOT	23	112035178	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	4211243	112035178	43235382	1420	4782										
AMOT	0	genome.wustl.edu	37	chrX	112065611	112065611	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttgcacactacagattggggTggcatgcccttgaagggata	13	8	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	112065611	112065611	T	G	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	silent	c.744	p.P248	0.995	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	231	2	0.85	190	28	12.73	-	-	-	G	112065611	T	G	112065611	2	3	67	1	0	0	0	0	0	0	0	1	582	1683	59	5		5	AMOT	23	112065611	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	30433	112065611	43204949	1421	4783										
FAM70A	0	genome.wustl.edu	37	chrX	119410811	119410811	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gccaacaatgttgaggatggTggcagaccagagcaggtggt	16	7	0	3			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	119410811	119410811	T	G	SNP	FAM70A	ENST00000309720	human	ensembl	69_37n	-1	known	missense	c.676	p.T226P	1.000	NULL	NULL	-	no_errors	FAM70A	HGNC	ENSG00000125355	182	0	0	128	22	14.67	-	-	-	G	119410811	T	G	119410811	3	3	67	1	0	0	0	0	1	0	0	0	5650	1696	59	5	385	5	FAM70A	23	119410811	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	7345200	119410811	35859749	1422	4784										
SASH3	0	genome.wustl.edu	37	chrX	128926673	128926673	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggcctactcaatggcaaggTgggctctttcaaattcatct	10	10	5	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	128926673	128926673	T	G	SNP	SASH3	ENST00000356892	human	ensembl	69_37n	1	known	missense	c.662	p.V221G	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122	146	1	0.68	166	23	11.98	-	-	-	G	128926673	T	G	128926673	3	3	67	1	0	0	0	0	1	0	0	0	13936	1696	59	5	684	5	SASH3	23	128926673	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9515862	128926673	26343887	1423	4785										
TFDP3	0	genome.wustl.edu	37	chrX	132352054	132352054	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaggcaaagtgagtgctgggTgggtttgggcttcctaccac	16	8	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	132352054	132352054	T	G	SNP	TFDP3	ENST00000310125	human	ensembl	69_37n	-1	known	silent	c.234	p.P78	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP3	HGNC	ENSG00000183434	209	2	0.93	261	29	10	-	-	-	G	132352054	T	G	132352054	2	3	67	1	0	0	0	0	0	0	0	1	15894	1683	59	5		5	TFDP3	23	132352054	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3425381	132352054	22918506	1424	4786										
FAM127B	0	genome.wustl.edu	37	chrX	134185326	134185326	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagctcggatacctccgaggTgagtccacatcactaggagc	11	13	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	134185326	134185326	T	G	SNP	FAM127B	ENST00000518153	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM127B	HGNC	ENSG00000203950	239	2	0.82	210	46	17.83	-	-	-	G	134185326	T	G	134185326	1	3	67	0	1	0	0	0	0	0	0	0	5472	1711	59	5		5	FAM127B	23	134185326	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	1833272	134185326	21085234	1425	4787										
RBMX	0	genome.wustl.edu	37	chrX	135960220	135960220	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atggtttggtggcttgttccAccttgatggcttttccatct	10	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	135960220	135960220	A	C	SNP	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	missense	c.242	p.V81G	1.000	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	163	1	0.61	154	20	11.43	-	-	-	C	135960220	A	C	135960220	3	2	67	1	0	0	0	0	1	0	0	0	13234	159	6	5	1012	5	RBMX	23	135960220	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1774894	135960220	19310340	1426	4788										
IDS	0	genome.wustl.edu	37	chrX	148584847	148584847	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gacatggagcagtaccagggTgaaagacttttcccaccgac	11	11	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	148584847	148584847	T	G	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	missense	c.413	p.H138P	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	552	2	0.36	141	17	10.76	-	-	-	G	148584847	T	G	148584847	3	3	67	1	0	0	0	0	1	0	0	0	7557	1696	59	5	1297	5	IDS	23	148584847	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	12624627	148584847	6685713	1427	4789										
CSAG1	0	genome.wustl.edu	37	chrX	151908826	151908826	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggaagctcggggagaccaggTggactggagtagactgtaca	17	7	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	151908826	151908826	T	G	SNP	CSAG1	ENST00000370287	human	ensembl	69_37n	1	known	missense	c.65	p.V22G	0.001	NULL	NULL	-	no_errors	CSAG1	HGNC	ENSG00000198930	307	3	0.95	321	44	11.92	-	-	-	G	151908826	T	G	151908826	3	3	67	1	0	0	0	0	1	0	0	0	3956	1696	59	5	71	5	CSAG1	23	151908826	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	3323979	151908826	3361734	1428	4790										
BGN	0	genome.wustl.edu	37	chrX	152773776	152773776	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ctgtcccatgggcttcggggTgaagcgggcctactacaacg	14	12	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	152773776	152773776	T	G	SNP	BGN	ENST00000331595	human	ensembl	69_37n	1	known	missense	c.980	p.V327G	0.939	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492	71	0	0	47	13	21.67	-	-	-	G	152773776	T	G	152773776	3	3	67	1	0	0	0	0	1	0	0	0	1423	1696	59	5	1006	5	BGN	23	152773776	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	864950	152773776	2496784	1429	4791										
SLC6A8	0	genome.wustl.edu	37	chrX	152956687	152956687	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gggagcacggccagcctgggTggggacataaaggggtggca	20	8	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	152956687	152956687	T	G	SNP	SLC6A8	ENST00000466243	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC6A8	HGNC	ENSG00000130821	35	0	0	28	12	29.27	-	-	-	G	152956687	T	G	152956687	1	3	67	0	1	0	0	0	0	0	0	0	14779	1711	59	5		5	SLC6A8	23	152956687	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	182911	152956687	2313873	1430	4792										
BCAP31	0	genome.wustl.edu	37	chrX	152966356	152966356	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agcagcaggcacgtgccaggTggaagccagctgcaggcagg	17	11	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	152966356	152966356	T	G	SNP	BCAP31	ENST00000477175	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCAP31	HGNC	ENSG00000185825	129	0	0	77	13	14.29	-	-	-	G	152966356	T	G	152966356	1	3	67	0	1	0	0	0	0	0	0	0	1351	1711	59	5		5	BCAP31	23	152966356	RNA	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	9669	152966356	2304204	1431	4793										
PDZD4	0	genome.wustl.edu	37	chrX	153070650	153070650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	atcccggtcgctgtccttccAccttttcgccagctgtggag	10	15	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153070650	153070650	A	C	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.664	p.W222G	0.989	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	124	0	0	122	38	23.46	-	-	-	C	153070650	A	C	153070650	3	2	67	1	0	0	0	0	1	0	0	0	11776	159	6	5	1653	5	PDZD4	23	153070650	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	104294	153070650	2199910	1432	4794										
L1CAM	0	genome.wustl.edu	37	chrX	153135597	153135597	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cgccatcatcctcctcgcccActttcagcagctgcagggtc	8	18	2	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153135597	153135597	A	C	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.911	p.V304G	0.953	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	102	1	0.97	114	20	14.81	-	-	-	C	153135597	A	C	153135597	3	2	67	1	0	0	0	0	1	0	0	0	8642	159	6	5	2952	5	L1CAM	23	153135597	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	64947	153135597	2134963	1433	4795										
L1CAM	0	genome.wustl.edu	37	chrX	153135897	153135897	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gcccctgcaaggccaccaggTggctgctggagttggtgggg	18	11	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153135897	153135897	T	G	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.758	p.H253P	0.994	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	160	0	0	137	22	13.58	-	-	-	G	153135897	T	G	153135897	3	3	67	1	0	0	0	0	1	0	0	0	8642	1696	59	5	3109	5	L1CAM	23	153135897	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	300	153135897	2134663	1434	4796										
NAA10	0	genome.wustl.edu	37	chrX	153197767	153197767	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cttccctcagcccggcttccAcctcttcctgacatgcaggg	8	18	2	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153197767	153197767	A	C	SNP	NAA10	ENST00000464845	human	ensembl	69_37n	-1	known	splice_site	c.341+2	e5+2	1.000	-	-	-	no_errors	NAA10	HGNC	ENSG00000102030	130	0	0	155	20	11.36	-	-	-	C	153197767	A	C	153197767	5	2	67	1	0	0	0	0	0	0	1	0	10188	173	6	5	380	5	NAA10	23	153197767	Splice_Site	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	61870	153197767	2072793	1435	4797										
HCFC1	0	genome.wustl.edu	37	chrX	153222819	153222819	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggggatggttttgatgatggTggtcgtgccgggcttggtgg	21	4	0	2			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153222819	153222819	T	G	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.2299	p.T767P	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	121	1	0.8	104	23	17.97	-	-	-	G	153222819	T	G	153222819	3	3	67	1	0	0	0	0	1	0	0	0	7042	1696	59	5	3864	5	HCFC1	23	153222819	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	25052	153222819	2047741	1436	4798										
IRAK1	0	genome.wustl.edu	37	chrX	153279769	153279769	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	agtatggctaccaggtggccAcacctgcagctgcagtcctc	11	14	0	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153279769	153279769	A	C	SNP	IRAK1	ENST00000467236	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	IRAK1	HGNC	ENSG00000184216	43	0	0	27	10	27.03	-	-	-	C	153279769	A	C	153279769	1	2	67	0	1	0	0	0	0	0	0	0	7875	174	6	5		5	IRAK1	23	153279769	RNA	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	56950	153279769	1990791	1437	4799										
IRAK1	0	genome.wustl.edu	37	chrX	153284456	153284456	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	gaaggggctggagatggcggTggaggccacagggaagcagg	22	6	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153284456	153284456	T	G	SNP	IRAK1	ENST00000369980	human	ensembl	69_37n	-1	known	silent	c.510	p.P170	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	195	1	0.51	117	26	18.18	-	-	-	G	153284456	T	G	153284456	2	3	67	1	0	0	0	0	0	0	0	1	7875	1683	59	5		5	IRAK1	23	153284456	Silent	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	4687	153284456	1986104	1438	4800										
OPN1MW2	0	genome.wustl.edu	37	chrX	153496171	153496171	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	caaccctggctaccccttccAccctttgatggctgccctgc	7	19	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153496171	153496171	A	C	SNP	OPN1MW2	ENST00000369929	human	ensembl	69_37n	1	known	missense	c.899	p.H300P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1MW2	HGNC	ENSG00000166160	210	1	0.47	273	65	19.06	-	-	-	C	153496171	A	C	153496171	3	2	67	1	0	0	0	0	1	0	0	0	10952	159	6	5	2036	5	OPN1MW2	23	153496171	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	211715	153496171	1774389	1439	4801										
TKTL1	0	genome.wustl.edu	37	chrX	153533455	153533455	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgcggttaggagctggcctcActgtgcacagggggaggggt	19	8	1	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153533455	153533455	A	C	SNP	TKTL1	ENST00000426203	human	ensembl	69_37n	1	putative	silent	c.60	p.S20	0.000	NULL	pfam_Transketolase_N,pfam_DH_E1	-	no_start_codon:pseudogene:no_stop_codon	TKTL1	HGNC	ENSG00000007350	25	0	0	15	4	21.05	-	-	-	C	153533455	A	C	153533455	2	2	67	1	0	0	0	0	0	0	0	1	16030	174	6	5		5	TKTL1	23	153533455	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	37284	153533455	1737105	1440	4802										
FLNA	0	genome.wustl.edu	37	chrX	153595194	153595194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	tgaactctgcccgcttcttcAccatgttgcctgtgggctcg	10	14	3	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153595194	153595194	A	C	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.893	p.V298G	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	110	0	0	123	17	11.97	-	-	-	C	153595194	A	C	153595194	3	2	67	1	0	0	0	0	1	0	0	0	5979	159	6	5	7222	5	FLNA	23	153595194	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	61739	153595194	1675366	1441	4803										
G6PD	0	genome.wustl.edu	37	chrX	153763482	153763482	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ggttggcctgtgaccccaggTggagggcattcatgtggctg	17	9	1	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	153763482	153763482	T	G	SNP	G6PD	ENST00000369620	human	ensembl	69_37n	-1	known	missense	c.386	p.H129P	0.799	pfam_G6P_DH_NAD-bd,pirsf_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211	164	1	0.61	72	23	24.21	-	-	-	G	153763482	T	G	153763482	3	3	67	1	0	0	0	0	1	0	0	0	6195	1696	59	5	1197	5	G6PD	23	153763482	Missense_Mutation	SNP	T	TCGA-A2-A0T5-01A-21D-A099-09	168288	153763482	1507078	1442	4804										
SPRY3	0	genome.wustl.edu	37	chrX	155003851	155003851	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	ttggccagcattacaccctcAccttcaggccaatccatcat	5	16	3	0			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	155003851	155003851	A	C	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	silent	c.318	p.S106	0.996	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	168	1	0.58	129	26	16.67	-	-	-	C	155003851	A	C	155003851	2	2	67	1	0	0	0	0	0	0	0	1	15198	146	6	5		5	SPRY3	23	155003851	Silent	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	1240369	155003851	266709	1443	4805										
IL9R	0	genome.wustl.edu	37	chrX	155233503	155233503	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.000696864111498258	1	0.905649215309131	1.01807088223273	0	1.59982567208001	1	1	0	cagcctggtggacccggagtAcctgccccggagacacggtg	15	14	0	1			TCGA-A2-A0T5-01A-21D-A099-09	TCGA-A2-A0T5-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93772a4b-d2bc-44e3-837e-fe71ecd4e9aa	a6f453e4-153d-489b-b138-b0a0e519e88c	X	155233503	155233503	A	C	SNP	IL9R	ENST00000244174	human	ensembl	69_37n	1	known	missense	c.416	p.Y139S	0.993	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334	196	0	0	150	27	15.17	-	-	-	C	155233503	A	C	155233503	3	2	67	1	0	0	0	0	1	0	0	0	7762	391	14	5	430	5	IL9R	23	155233503	Missense_Mutation	SNP	A	TCGA-A2-A0T5-01A-21D-A099-09	229652	155233503	37057	1444	4806										
AGRN	0	genome.wustl.edu	37	chr1	957654	957654	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gctggacggcggcaacaaggTggtgatcagcggctttggag	18	8	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	957654	957654	T	G	SNP	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	missense	c.275	p.V92G	1.000	pfam_Agrin_NtA,superfamily_TIMP-like_OB-fold,pfscan_Agrin_NtA	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	117	0	0	54	14	20.29	-	-	-	G	957654	T	G	957654	3	3	68	1	0	0	0	0	1	0	0	0	397	1696	59	5	281	5	AGRN	1	957654	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		957654	248292967	1	4807										
KIF17	0	genome.wustl.edu	37	chr1	21013963	21013963	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gtctggccagcttggcttccAcctcggcaaacgggtcctgc	12	15	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	21013963	21013963	A	C	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.1856	p.V619G	0.882	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	56	0	0	23	7	23.33	-	-	-	C	21013963	A	C	21013963	3	2	68	1	0	0	0	0	1	0	0	0	8331	159	6	5	1265	5	KIF17	1	21013963	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	20056309	21013963	228236658	2	4808										
LRRC41	0	genome.wustl.edu	37	chr1	46751084	46751084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	acacccaggagctcagcaggTggcatagtgtcagggctgcc	14	12	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	46751084	46751084	T	G	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1445	p.H482P	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	97	0	0	45	11	19.64	-	-	-	G	46751084	T	G	46751084	3	3	68	1	0	0	0	0	1	0	0	0	9065	1696	59	5	1021	5	LRRC41	1	46751084	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	25737121	46751084	202499537	3	4809										
NTNG1	0	genome.wustl.edu	37	chr1	107691449	107691449	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgtggagaccctcctgagacGttctgtgcaatggtgaggta	14	8	1	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	107691449	107691449	G	A	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	1	known	silent	c.234	p.T78	0.702	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	102	0	0	64	25	28.09	-	-	-	A	107691449	G	A	107691449	2	1	68	1	0	0	0	0	0	0	0	1	10777	1132	40	1		1	NTNG1	1	107691449	Silent	SNP	G	TCGA-A2-A0T6-01A-11D-A099-09	60940365	107691449	141559172	4	4810										
DEDD	0	genome.wustl.edu	37	chr1	161094221	161094221	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	caccatgctcttctggccacAcctggcttgcccgccgcttt	8	18	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	161094221	161094221	A	C	SNP	DEDD	ENST00000368005	human	ensembl	69_37n	-1	known	missense	c.32	p.V11G	1.000	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD	HGNC	ENSG00000158796	142	1	0.69	48	11	18.64	-	-	-	C	161094221	A	C	161094221	3	2	68	1	0	0	0	0	1	0	0	0	4415	159	6	5	940	5	DEDD	1	161094221	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	53402772	161094221	88156400	5	4811										
PPOX	0	genome.wustl.edu	37	chr1	161136696	161136696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cggcttggccgccagttaccAcctgagccgggccccctgcc	12	19	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	161136696	161136696	A	C	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	missense	c.59	p.H20P	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	71	0	0	49	8	13.79	-	-	-	C	161136696	A	C	161136696	3	2	68	1	0	0	0	0	1	0	0	0	12425	159	6	5	61	5	PPOX	1	161136696	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	42475	161136696	88113925	6	4812										
OR2B11	0	genome.wustl.edu	37	chr1	247614794	247614794	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gcaattgcaccgtcaggaccAcctgcacgaaggagttgccg	12	13	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	1	247614794	247614794	A	C	SNP	OR2B11	ENST00000318749	human	ensembl	69_37n	-1	known	missense	c.491	p.V164G	0.007	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2B11	HGNC	ENSG00000177535	91	0	0	34	8	19.05	-	-	-	C	247614794	A	C	247614794	3	2	68	1	0	0	0	0	1	0	0	0	11061	159	6	5	465	5	OR2B11	1	247614794	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	86478098	247614794	1635827	7	4813										
ASAP2	0	genome.wustl.edu	37	chr2	9517076	9517076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tccaccttgcagtcagatccGtggatcgaacctctcttcac	7	15	3	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	9517076	9517076	G	A	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	missense	c.1786	p.V596M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	131	0	0	146	25	14.62	-	-	-	A	9517076	G	A	9517076	3	1	68	1	0	0	0	0	1	0	0	0	1015	1145	40	1	1856	1	ASAP2	2	9517076	Missense_Mutation	SNP	G	TCGA-A2-A0T6-01A-11D-A099-09		9517076	233682297	8	4814										
OTOF	0	genome.wustl.edu	37	chr2	26696085	26696085	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	acggcatgggagcccaccagTgtgtagcgaccgaaggcccg	15	13	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	26696085	26696085	T	G	SNP	OTOF	ENST00000426958	human	ensembl	69_37n	-1	putative	missense	c.214	p.T72P	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OTOF	HGNC	ENSG00000115155	101	0	0	30	5	13.51	-	-	-	G	26696085	T	G	26696085	3	3	68	1	0	0	0	0	1	0	0	0	11376	1683	59	5	2602	5	OTOF	2	26696085	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	17179009	26696085	216503288	9	4815										
LIMS2	0	genome.wustl.edu	37	chr2	128400528	128400528	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgcagttgaagtggtcagggTggtaggcgtcgctcctgaac	16	8	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	128400528	128400528	T	G	SNP	LIMS2	ENST00000324938	human	ensembl	69_37n	-1	known	missense	c.551	p.H184P	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163	128	1	0.77	42	8	16	-	-	-	G	128400528	T	G	128400528	3	3	68	1	0	0	0	0	1	0	0	0	8859	1696	59	5	570	5	LIMS2	2	128400528	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	101704443	128400528	114798845	10	4816										
XIRP2	0	genome.wustl.edu	37	chr2	168104724	168104724	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gaaaggtccttgaatccaatCaactttaaccctgagaataa	6	9	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	168104724	168104724	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.6822	p.I2274	0.794	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	21	0	0	39	16	29.09	-	-	-	T	168104724	C	T	168104724	2	4	68	1	0	0	0	0	0	0	0	1	17527	816	29	2		2	XIRP2	2	168104724	Silent	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	39704196	168104724	75094649	11	4817										
ZSWIM2	0	genome.wustl.edu	37	chr2	187713647	187713647	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	atgccagtgggggaacctggTgggcggggatgatggccaac	19	8	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	187713647	187713647	T	G	SNP	ZSWIM2	ENST00000419862	human	ensembl	69_37n	-1	known	missense	c.211	p.T71P	0.000	NULL	NULL	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	20	0	0	10	6	37.5	-	-	-	G	187713647	T	G	187713647	3	3	68	1	0	0	0	0	1	0	0	0	18332	1711	59	5		5	ZSWIM2	2	187713647	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	19608923	187713647	55485726	12	4818										
OR6B3	0	genome.wustl.edu	37	chr2	240984826	240984826	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gatgcgcaggacagccagggTgatgtgcgcatatgacagca	15	9	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	2	240984826	240984826	T	G	SNP	OR6B3	ENST00000319423	human	ensembl	69_37n	-1	known	missense	c.664	p.T222P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6B3	HGNC	ENSG00000178586	168	1	0.59	49	18	26.47	-	-	-	G	240984826	T	G	240984826	3	3	68	1	0	0	0	0	1	0	0	0	11262	1696	59	5	334	5	OR6B3	2	240984826	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	53271179	240984826	2214547	13	4819										
VILL	0	genome.wustl.edu	37	chr3	38039036	38039036	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggtggtcgtgcacagattggTgtggtggatgatgaggccaa	18	5	0	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	38039036	38039036	T	G	SNP	VILL	ENST00000283713	human	ensembl	69_37n	1	known	silent	c.624	p.G208	0.379	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	200	2	0.99	53	13	19.7	-	-	-	G	38039036	T	G	38039036	2	3	68	1	0	0	0	0	0	0	0	1	17262	1683	59	5		5	VILL	3	38039036	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		38039036	159983394	14	4820										
NBEAL2	0	genome.wustl.edu	37	chr3	47045885	47045885	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgcctcaggccttacccaggTgagagccctgggtgtgaggg	16	11	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	47045885	47045885	T	G	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	splice_site	c.6198+2	e37+2	0.999	-	-	-	no_errors	NBEAL2	HGNC	ENSG00000160796	68	0	0	33	7	17.5	-	-	-	G	47045885	T	G	47045885	5	3	68	1	0	0	0	0	0	0	1	0	10261	1710	59	5	6346	5	NBEAL2	3	47045885	Splice_Site	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	9006849	47045885	150976545	15	4821										
SETD2	0	genome.wustl.edu	37	chr3	47129736	47129736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gagcttctagctctccatccAcctaccacagcaaataaaaa	4	14	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	47129736	47129736	A	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.5144	p.V1715G	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	51	0	0	107	17	13.49	-	-	-	C	47129736	A	C	47129736	3	2	68	1	0	0	0	0	1	0	0	0	14219	173	6	5	2598	5	SETD2	3	47129736	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	83851	47129736	150892694	16	4822										
LAMB2	0	genome.wustl.edu	37	chr3	49159431	49159431	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gccactgccccccggatggcAccctgggcaataccctgtgc	11	18	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	49159431	49159431	A	C	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	silent	c.4869	p.G1623	0.323	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	132	1	0.75	44	12	21.43	-	-	-	C	49159431	A	C	49159431	2	2	68	1	0	0	0	0	0	0	0	1	8665	146	6	5		5	LAMB2	3	49159431	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	2029695	49159431	148862999	17	4823										
MAPKAPK3	0	genome.wustl.edu	37	chr3	50683586	50683586	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cccagcctttgtggcttcccAcccttctactccaacacggg	7	18	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	50683586	50683586	A	C	SNP	MAPKAPK3	ENST00000357955	human	ensembl	69_37n	1	known	silent	c.720	p.P240	0.917	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738	143	1	0.69	61	17	21.25	-	-	-	C	50683586	A	C	50683586	2	2	68	1	0	0	0	0	0	0	0	1	9361	146	6	5		5	MAPKAPK3	3	50683586	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	1524155	50683586	147338844	18	4824										
POC1A	0	genome.wustl.edu	37	chr3	52183914	52183914	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aggagagaagttcacacaggTgacggcatccttgtggccag	14	9	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	52183914	52183914	T	G	SNP	POC1A	ENST00000296484	human	ensembl	69_37n	-1	known	missense	c.193	p.T65P	0.992	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1A	HGNC	ENSG00000164087	144	1	0.69	30	10	25	-	-	-	G	52183914	T	G	52183914	3	3	68	1	0	0	0	0	1	0	0	0	12249	1696	59	5	1066	5	POC1A	3	52183914	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	1500328	52183914	145838516	19	4825										
PDIA5	0	genome.wustl.edu	37	chr3	122842988	122842988	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	acagcgtgcgcggcttccccAccatctgctattttgagtac	9	14	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	122842988	122842988	A	C	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.685	p.T229P	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	108	0	0	64	8	11.11	-	-	-	C	122842988	A	C	122842988	3	2	68	1	0	0	0	0	1	0	0	0	11744	159	6	5	719	5	PDIA5	3	122842988	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	70659074	122842988	75179442	20	4826										
SLC7A14	0	genome.wustl.edu	37	chr3	170198117	170198117	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aaaccggatccatgtgatggTggagagctttagcatgagat	13	6	0	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	3	170198117	170198117	T	G	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	missense	c.1954	p.T652P	1.000	NULL	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	100	0	0	37	7	15.56	-	-	-	G	170198117	T	G	170198117	3	3	68	1	0	0	0	0	1	0	0	0	14785	1696	59	5	369	5	SLC7A14	3	170198117	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	47355129	170198117	27824313	21	4827										
PLA2G12A	0	genome.wustl.edu	37	chr4	110650902	110650902	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggtctgggcctgctcctggcAcctgacaacagcggccatga	13	14	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	4	110650902	110650902	A	C	SNP	PLA2G12A	ENST00000243501	human	ensembl	69_37n	-1	known	missense	c.64	p.C22G	0.665	pfam_PLipase_A2_secretory_G12	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	-	no_errors	PLA2G12A	HGNC	ENSG00000123739	135	0	0	41	9	17.65	-	-	-	C	110650902	A	C	110650902	3	2	68	1	0	0	0	0	1	0	0	0	12064	159	6	5	521	5	PLA2G12A	4	110650902	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		110650902	80503374	22	4828										
RAI14	0	genome.wustl.edu	37	chr5	34823772	34823772	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aagaagcccaagaagaaatcAtgaaattaaaagacacacta	6	7	1	5			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	5	34823772	34823772	A	T	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	1	known	missense	c.1834	p.M612L	0.656	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	19	0	0	49	31	38.75	-	-	-	T	34823772	A	T	34823772	3	4	68	1	0	0	0	0	1	0	0	0	13091	217	8	5	1944	5	RAI14	5	34823772	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		34823772	146091488	23	4829										
GEMIN5	0	genome.wustl.edu	37	chr5	154317530	154317530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ccaagggtggtgagttacctCgaaacgggggtgtccctgga	16	9	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	5	154317530	154317530	C	T	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	missense	c.164	p.R55Q	1.000	smart_WD40_repeat	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	32	0	0	12	10	45.45	-	-	-	T	154317530	C	T	154317530	3	4	68	1	0	0	0	0	1	0	0	0	6383	884	31	1	4474	1	GEMIN5	5	154317530	Missense_Mutation	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	119493758	154317530	26597730	24	4830										
TUBB2B	0	genome.wustl.edu	37	chr6	3227744	3227744	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggcgccgatctggttgccgcActggcccgcctggatgtgca	15	14	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	3227744	3227744	A	C	SNP	TUBB2B	ENST00000259818	human	ensembl	69_37n	-1	known	missense	c.34	p.C12G	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	54	0	0	15	5	25	-	-	-	C	3227744	A	C	3227744	3	2	68	1	0	0	0	0	1	0	0	0	16852	159	6	5	1319	5	TUBB2B	6	3227744	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		3227744	167887323	25	4831										
GNL1	0	genome.wustl.edu	37	chr6	30514036	30514036	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cctcgtcacctgctggccccAccctgccctgcaaaaccacc	6	22	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	30514036	30514036	A	C	SNP	GNL1	ENST00000376621	human	ensembl	69_37n	-1	known	missense	c.1637	p.V546G	1.000	NULL	pfam_GTP_binding_domain	-	no_errors	GNL1	HGNC	ENSG00000204590	128	1	0.77	68	15	18.07	-	-	-	C	30514036	A	C	30514036	3	2	68	1	0	0	0	0	1	0	0	0	6587	159	6	5	190	5	GNL1	6	30514036	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	27286292	30514036	140601031	26	4832										
FLOT1	0	genome.wustl.edu	37	chr6	30698753	30698753	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ccgcttccgctggcttccgcAcccgggcctccagctccttc	9	21	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	30698753	30698753	A	C	SNP	FLOT1	ENST00000376389	human	ensembl	69_37n	-1	known	missense	c.848	p.V283G	0.981	NULL	pfam_Band_7,smart_Band_7	-	no_errors	FLOT1	HGNC	ENSG00000137312	54	0	0	24	5	17.24	-	-	-	C	30698753	A	C	30698753	3	2	68	1	0	0	0	0	1	0	0	0	5982	159	6	5	455	5	FLOT1	6	30698753	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	184717	30698753	140416314	27	4833										
BAK1	0	genome.wustl.edu	37	chr6	33541881	33541881	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agtcgaccacgaagcgggtcAcctggcctaggaagccagtc	13	13	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	33541881	33541881	A	C	SNP	BAK1	ENST00000360661	human	ensembl	69_37n	-1	known	missense	c.461	p.V154G	0.970	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BAK1	HGNC	ENSG00000030110	67	0	0	30	5	13.89	-	-	-	C	33541881	A	C	33541881	3	2	68	1	0	0	0	0	1	0	0	0	1309	159	6	5	182	5	BAK1	6	33541881	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	2843128	33541881	137573186	28	4834										
FTSJD2	0	genome.wustl.edu	37	chr6	37418099	37418099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctgacactcaggaaatgagcGattggatggtggtgggaaag	16	5	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	37418099	37418099	G	A	SNP	FTSJD2	ENST00000373451	human	ensembl	69_37n	1	known	missense	c.517	p.D173N	0.998	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_Rsp5_WWP,pfscan_G_patch_dom	-	no_errors	FTSJD2	HGNC	ENSG00000137200	298	0	0	122	50	29.07	-	-	-	A	37418099	G	A	37418099	3	1	68	1	0	0	0	0	1	0	0	0	6140	1058	37	1	531	1	FTSJD2	6	37418099	Missense_Mutation	SNP	G	TCGA-A2-A0T6-01A-11D-A099-09	3876218	37418099	133696968	29	4835										
MED23	0	genome.wustl.edu	37	chr6	131912472	131912472	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctttggaatgagagaaagttGtccgatgctagaatggtgcc	13	6	0	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	131912472	131912472	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.3685	p.Q1229*	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	47	0	0	38	18	32.14	-	-	-	A	131912472	G	A	131912472	4	1	68	1	0	0	0	0	0	1	0	0	9512	1386	48	4	462	4	MED23	6	131912472	Nonsense_Mutation	SNP	G	TCGA-A2-A0T6-01A-11D-A099-09	94494373	131912472	39202595	30	4836										
PHACTR2	0	genome.wustl.edu	37	chr6	143929461	143929461	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgagacatggacaacgccggTgggtaaatcaagcatgaatt	12	7	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	143929461	143929461	T	G	SNP	PHACTR2	ENST00000427704	human	ensembl	69_37n	1	known	splice_site	c.13+2	e1+2	1.000	-	-	-	no_errors	PHACTR2	HGNC	ENSG00000112419	180	1	0.55	47	11	18.64	-	-	-	G	143929461	T	G	143929461	5	3	68	1	0	0	0	0	0	0	1	0	11884	1710	59	5	17	5	PHACTR2	6	143929461	Splice_Site	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	12016989	143929461	27185606	31	4837										
FNDC1	0	genome.wustl.edu	37	chr6	159650900	159650900	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	catttggagcaaagtccctcAcctatcctggagacactact	7	13	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	6	159650900	159650900	A	C	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.1234	p.T412P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	143	1	0.69	66	10	13.16	-	-	-	C	159650900	A	C	159650900	3	2	68	1	0	0	0	0	1	0	0	0	6014	159	6	5	1272	5	FNDC1	6	159650900	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	15721439	159650900	11464167	32	4838										
UFSP1	0	genome.wustl.edu	37	chr7	100486564	100486564	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cactcacctcttgccagcccAcccacccagcagcctgtagt	6	20	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	7	100486564	100486564	A	C	SNP	UFSP1	ENST00000388761	human	ensembl	69_37n	-1	known	missense	c.329	p.V110G	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP1	HGNC	ENSG00000176125	133	1	0.75	58	15	20.55	-	-	-	C	100486564	A	C	100486564	3	2	68	1	0	0	0	0	1	0	0	0	17034	159	6	5	103	5	UFSP1	7	100486564	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		100486564	58652099	33	4839										
BLK	0	genome.wustl.edu	37	chr8	11412359	11412359	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	actacatctccccccggatcAccttcccctcgctccaggcc	5	22	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	11412359	11412359	A	C	SNP	BLK	ENST00000259089	human	ensembl	69_37n	1	known	missense	c.580	p.T194P	0.937	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	35	0	0	25	6	19.35	-	-	-	C	11412359	A	C	11412359	3	2	68	1	0	0	0	0	1	0	0	0	1449	159	6	5	602	5	BLK	8	11412359	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		11412359	134951663	34	4840										
CHRNA2	0	genome.wustl.edu	37	chr8	27319270	27319270	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	catacttccagtcctccttcAcctgtggggaagacagcaca	8	14	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	27319270	27319270	A	C	SNP	CHRNA2	ENST00000407991	human	ensembl	69_37n	-1	known	missense	c.1466	p.V489G	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903	188	1	0.53	70	13	15.66	-	-	-	C	27319270	A	C	27319270	3	2	68	1	0	0	0	0	1	0	0	0	3412	173	6	5	127	5	CHRNA2	8	27319270	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	15906911	27319270	119044752	35	4841										
ANK1	0	genome.wustl.edu	37	chr8	41566342	41566342	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gtttcgagagcagcagagccAccatctctgcgtggccctcc	11	15	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	41566342	41566342	A	C	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.1952	p.V651G	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	89	0	0	25	5	16.13	-	-	-	C	41566342	A	C	41566342	3	2	68	1	0	0	0	0	1	0	0	0	620	159	6	5	4151	5	ANK1	8	41566342	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	14247072	41566342	104797680	36	4842										
RP1	0	genome.wustl.edu	37	chr8	55534763	55534763	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aaaccaggaaattatgacatCcaaaaatacttgcttcctgc	5	10	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	55534763	55534763	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	silent	c.702	p.I234	0.987	superfamily_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	176	0	0	153	53	25.73	-	-	-	T	55534763	C	T	55534763	2	4	68	1	0	0	0	0	0	0	0	1	13618	845	30	2		2	RP1	8	55534763	Silent	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	13968421	55534763	90829259	37	4843										
CPSF1	0	genome.wustl.edu	37	chr8	145621651	145621651	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggccgtcgatggccatggggTgtagccgcagagcccctcgg	17	13	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	145621651	145621651	T	G	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.2891	p.H964P	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	37	0	0	17	7	29.17	-	-	-	G	145621651	T	G	145621651	3	3	68	1	0	0	0	0	1	0	0	0	3854	1696	59	5	1492	5	CPSF1	8	145621651	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	90086888	145621651	742371	38	4844										
CPSF1	0	genome.wustl.edu	37	chr8	145623023	145623023	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ccgagctcgtcacgggccccAcccaggcggctctcagtggt	13	17	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	8	145623023	145623023	A	C	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	silent	c.2145	p.G715	0.243	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	29	0	0	13	6	31.58	-	-	-	C	145623023	A	C	145623023	2	2	68	1	0	0	0	0	0	0	0	1	3854	146	6	5		5	CPSF1	8	145623023	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	1372	145623023	740999	39	4845										
CDK20	0	genome.wustl.edu	37	chr9	90588982	90588982	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aaggcagacactgccagcccAccctcggctgggaaagagag	13	13	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	9	90588982	90588982	A	C	SNP	CDK20	ENST00000336654	human	ensembl	69_37n	-1	known	missense	c.83	p.V28G	0.007	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK20	HGNC	ENSG00000156345	63	0	0	28	8	22.22	-	-	-	C	90588982	A	C	90588982	3	2	68	1	0	0	0	0	1	0	0	0	3166	159	6	5	1024	5	CDK20	9	90588982	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		90588982	50624449	40	4846										
PPP2R4	0	genome.wustl.edu	37	chr9	131891338	131891339	+	Frame_Shift_Del	DEL	CT	CT	-													0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	actcctccagtggaccagccCtctcggtttgggaataaggc							TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	9	131891338	131891339	CT	-	DEL	PPP2R4	ENST00000452489	human	ensembl	69_37n	1	known	frame_shift_del	c.396_397	p.R134fs	1.000:1.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383	120	0	0	61	8	11.59	-	-	-	-	131891339	CT	-	131891338	7	5	68	1	0	1	0	1	0	0	0	0	12468	668	24	0	414	0	PPP2R4	9	131891338	Frame_Shift_Del	DEL	CT	TCGA-A2-A0T6-01A-11D-A099-09	41302356	131891338	9322093	41	4847	37	2								
PPP2R4	0	genome.wustl.edu	37	chr9	131891344	131891347	+	Frame_Shift_Del	DEL	GTTT	GTTT	-													0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ccagtggaccagccctctcgGtttgggaataaggcatacag							TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	GTTT	GTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	9	131891344	131891347	GTTT	-	DEL	PPP2R4	ENST00000452489	human	ensembl	69_37n	1	known	frame_shift_del	c.402_405	p.F135fs	0.836:1.000:1.000:0.999	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383	108	0	0	60	8	11.76	-	-	-	-	131891347	GTTT	-	131891344	7	5	68	1	0	1	0	1	0	0	0	0	12468	1248	44	0	420	0	PPP2R4	9	131891344	Frame_Shift_Del	DEL	GTTT	TCGA-A2-A0T6-01A-11D-A099-09	6	131891344	9322087	42	4848	37	2								
KCNT1	0	genome.wustl.edu	37	chr9	138676624	138676624	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cagatgaaaatcaccgagggCgacctgtggatccgcacgta	12	11	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	9	138676624	138676624	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	silent	c.3045	p.G1015	0.961	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	43	0	0	12	5	29.41	-	-	-	T	138676624	C	T	138676624	2	4	68	1	0	0	0	0	0	0	0	1	8145	755	27	1		1	KCNT1	9	138676624	Silent	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	6785280	138676624	2536807	43	4849										
FAM107B	0	genome.wustl.edu	37	chr10	14816537	14816537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgagtatcagccacgccggaCtgattgaaggaagcactctc	11	11	2	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	10	14816537	14816537	C	T	SNP	FAM107B	ENST00000181796	human	ensembl	69_37n	-1	known	silent	c.126	p.Q42	0.950	NULL	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809	118	0	0	36	16	30.77	-	-	-	T	14816537	C	T	14816537	2	4	68	1	0	0	0	0	0	0	0	1	5430	564	20	4		4	FAM107B	10	14816537	Silent	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09		14816537	120718210	44	4850										
DRGX	0	genome.wustl.edu	37	chr10	50574265	50574265	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agggccggggctgctgctggTggaaggcaggaggttggctg	22	7	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	10	50574265	50574265	T	G	SNP	DRGX	ENST00000434016	human	ensembl	69_37n	-1	known	missense	c.703	p.T235P	0.012	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DRGX	HGNC	ENSG00000165606	147	1	0.68	38	8	17.39	-	-	-	G	50574265	T	G	50574265	3	3	68	1	0	0	0	0	1	0	0	0	4798	1696	59	5	106	5	DRGX	10	50574265	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	35757728	50574265	84960482	45	4851										
NDST2	0	genome.wustl.edu	37	chr10	75567934	75567934	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggaggcctggggggccgaggTggaactggaggccgtgcagg	23	8	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	10	75567934	75567934	T	G	SNP	NDST2	ENST00000309979	human	ensembl	69_37n	-1	known	silent	c.213	p.P71	0.954	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST2	HGNC	ENSG00000166507	73	0	0	33	4	10.81	-	-	-	G	75567934	T	G	75567934	2	3	68	1	0	0	0	0	0	0	0	1	10328	1683	59	5		5	NDST2	10	75567934	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	24993669	75567934	59966813	46	4852										
EBF3	0	genome.wustl.edu	37	chr10	131761677	131761677	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aagcggtcctttcaatctccAccggctgcccctgcctatcg	8	17	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	10	131761677	131761677	A	C	SNP	EBF3	ENST00000355311	human	ensembl	69_37n	-1	known	missense	c.245	p.V82G	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF3	HGNC	ENSG00000108001	102	0	0	60	13	17.81	-	-	-	C	131761677	A	C	131761677	3	2	68	1	0	0	0	0	1	0	0	0	4917	159	6	5	1470	5	EBF3	10	131761677	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	56193743	131761677	3773070	47	4853										
DEAF1	0	genome.wustl.edu	37	chr11	688337	688337	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aggcaccgctgtacctggggTgaggggagctgccgggcctt	18	11	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	688337	688337	T	G	SNP	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	missense	c.511	p.T171P	0.999	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	75	0	0	47	13	21.67	-	-	-	G	688337	T	G	688337	3	3	68	1	0	0	0	0	1	0	0	0	4411	1696	59	5	1226	5	DEAF1	11	688337	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		688337	134318179	48	4854										
ABCC8	0	genome.wustl.edu	37	chr11	17449890	17449890	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctggggaccaggctctgcagTgggccggtgaggccccgaca	17	13	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	17449890	17449890	T	G	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	silent	c.1986	p.P662	0.003	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	66	0	0	27	4	12.9	-	-	-	G	17449890	T	G	17449890	2	3	68	1	0	0	0	0	0	0	0	1	58	1683	59	5		5	ABCC8	11	17449890	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	16761553	17449890	117556626	49	4855										
METTL12	0	genome.wustl.edu	37	chr11	62434166	62434166	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	atgaatagcctcctggagggTggcccaggccaaacacctct	11	13	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	62434166	62434166	T	G	SNP	METTL12	ENST00000532971	human	ensembl	69_37n	1	known	silent	c.366	p.G122	0.652	pfam_Methyltransf_11	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756	46	0	0	28	7	20	-	-	-	G	62434166	T	G	62434166	2	3	68	1	0	0	0	0	0	0	0	1	9567	1683	59	5		5	METTL12	11	62434166	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	44984276	62434166	72572350	50	4856										
DNAJC4	0	genome.wustl.edu	37	chr11	63999906	63999906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tcctgccccaccccagctgcAcccagaccgggaccctggga	10	20	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	63999906	63999906	A	C	SNP	DNAJC4	ENST00000321685	human	ensembl	69_37n	1	known	missense	c.185	p.H62P	0.998	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC4	HGNC	ENSG00000110011	48	0	0	32	5	13.51	-	-	-	C	63999906	A	C	63999906	3	2	68	1	0	0	0	0	1	0	0	0	4684	159	6	5	195	5	DNAJC4	11	63999906	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	1565740	63999906	71006610	51	4857										
RELA	0	genome.wustl.edu	37	chr11	65422220	65422220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgttccttccccagcctgggTgggcttgggggcaggtgggg	19	11	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	65422220	65422220	T	G	SNP	RELA	ENST00000406246	human	ensembl	69_37n	-1	known	missense	c.1285	p.T429P	0.896	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	RELA	HGNC	ENSG00000173039	59	0	0	29	4	12.12	-	-	-	G	65422220	T	G	65422220	3	3	68	1	0	0	0	0	1	0	0	0	13299	1696	59	5	374	5	RELA	11	65422220	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	1422314	65422220	69584296	52	4858										
ALDH3B2	0	genome.wustl.edu	37	chr11	67433785	67433785	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gctggggcagggccaccctcAcctggtccaggtactggggc	16	14	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	67433785	67433785	A	C	SNP	ALDH3B2	ENST00000349015	human	ensembl	69_37n	-1	known	splice_site	c.237+2	e3+2	1.000	-	-	-	no_errors	ALDH3B2	HGNC	ENSG00000132746	52	0	0	33	5	12.82	-	-	-	C	67433785	A	C	67433785	5	2	68	1	0	0	0	0	0	0	1	0	500	173	6	5	942	5	ALDH3B2	11	67433785	Splice_Site	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	2011565	67433785	67572731	53	4859										
PDE2A	0	genome.wustl.edu	37	chr11	72300262	72300262	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tggacttcttgtcttccaccAcctggcccaggcatcctgtc	8	16	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	72300262	72300262	A	C	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	missense	c.896	p.V299G	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642	99	1	0.98	51	7	12.07	-	-	-	C	72300262	A	C	72300262	3	2	68	1	0	0	0	0	1	0	0	0	11709	159	6	5	2009	5	PDE2A	11	72300262	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	4866477	72300262	62706254	54	4860										
ADAMTS15	0	genome.wustl.edu	37	chr11	130340998	130340998	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctatgtgctggcacccaaggTgagtgagcctggggcctgag	16	10	0	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	11	130340998	130340998	T	G	SNP	ADAMTS15	ENST00000299164	human	ensembl	69_37n	1	known	splice_site	c.1902+2	e6+2	1.000	-	-	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	53	0	0	37	7	15.56	-	-	-	G	130340998	T	G	130340998	5	3	68	1	0	0	0	0	0	0	1	0	260	1710	59	5	1926	5	ADAMTS15	11	130340998	Splice_Site	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	58040736	130340998	4665518	55	4861										
IQSEC3	0	genome.wustl.edu	37	chr12	247490	247490	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgtcccggcgcgccgcttgcAccatccaaaccgccttccgc	9	20	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	12	247490	247490	A	C	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.961	p.T321P	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	110	0	0	39	7	15.22	-	-	-	C	247490	A	C	247490	3	2	68	1	0	0	0	0	1	0	0	0	7873	159	6	5	975	5	IQSEC3	12	247490	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		247490	133604405	56	4862										
KRT83	0	genome.wustl.edu	37	chr12	52708539	52708539	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cactgcagacgctgcccgtcAccggccgggagcccgacacg	13	18	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	12	52708539	52708539	A	C	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	missense	c.1358	p.V453G	0.388	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	35	0	0	18	4	17.39	-	-	-	C	52708539	A	C	52708539	3	2	68	1	0	0	0	0	1	0	0	0	8550	159	6	5	127	5	KRT83	12	52708539	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	52461049	52708539	81143356	57	4863										
MYO1A	0	genome.wustl.edu	37	chr12	57422605	57422605	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgtagcttgctgttgtcaccAcctgcagggccctggacgac	12	14	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	12	57422605	57422605	A	C	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	silent	c.3066	p.G1022	0.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	252	2	0.78	96	26	21.14	-	-	-	C	57422605	A	C	57422605	2	2	68	1	0	0	0	0	0	0	0	1	10140	146	6	5		5	MYO1A	12	57422605	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	4714066	57422605	76429290	58	4864										
NAB2	0	genome.wustl.edu	37	chr12	57488479	57488479	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tcgcaggagcagcgtgaaagTggaggctgaggccagccggc	18	10	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	12	57488479	57488479	T	G	SNP	NAB2	ENST00000300131	human	ensembl	69_37n	1	known	missense	c.1553	p.V518G	1.000	NULL	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886	126	0	0	31	6	16.22	-	-	-	G	57488479	T	G	57488479	3	3	68	1	0	0	0	0	1	0	0	0	10204	1696	59	5	1579	5	NAB2	12	57488479	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	65874	57488479	76363416	59	4865										
HS6ST3	0	genome.wustl.edu	37	chr13	97485222	97485222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tcaacgagggtgcccgccaaCgcattgaggatctaaacttc	10	12	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	13	97485222	97485222	C	T	SNP	HS6ST3	ENST00000376705	human	ensembl	69_37n	1	known	missense	c.1186	p.R396C	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	120	0	0	60	18	23.08	-	-	-	T	97485222	C	T	97485222	3	4	68	1	0	0	0	0	1	0	0	0	7423	536	19	1	1192	1	HS6ST3	13	97485222	Missense_Mutation	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09		97485222	17684656	60	4866										
COL4A1	0	genome.wustl.edu	37	chr13	110833735	110833735	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tctccaggtaagccgtcaacAcctgttttaaagagtcaaaa	7	10	3	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	13	110833735	110833735	A	C	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	silent	c.2097	p.G699	0.769	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	45	0	0	35	9	20.45	-	-	-	C	110833735	A	C	110833735	2	2	68	1	0	0	0	0	0	0	0	1	3719	173	6	5		5	COL4A1	13	110833735	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	13348513	110833735	4336143	61	4867										
KHNYN	0	genome.wustl.edu	37	chr14	24901064	24901064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctggtgcaggaggcgtctagTgggcaggggccaggagcact	19	9	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	14	24901064	24901064	T	G	SNP	KHNYN	ENST00000251343	human	ensembl	69_37n	1	known	missense	c.597	p.S199R	0.032	NULL	pfam_RNase_Zc3h12	-	no_errors	KHNYN	HGNC	ENSG00000100441	27	0	0	30	6	16.22	-	-	-	G	24901064	T	G	24901064	3	3	68	1	0	0	0	0	1	0	0	0	8202	1693	59	5	603	5	KHNYN	14	24901064	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		24901064	82448476	62	4868										
SDR39U1	0	genome.wustl.edu	37	chr14	24910213	24910213	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tggaggctccccttggcctcAccttctctggcccttaggat	10	15	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	14	24910213	24910213	A	C	SNP	SDR39U1	ENST00000399390	human	ensembl	69_37n	-1	known	splice_site	c.43+2	e1+2	0.001	-	-	-	no_errors	SDR39U1	HGNC	ENSG00000100445	45	0	0	37	8	17.78	-	-	-	C	24910213	A	C	24910213	5	2	68	1	0	0	0	0	0	0	1	0	14060	174	6	5		5	SDR39U1	14	24910213	Splice_Site	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	9149	24910213	82439327	63	4869										
CDC42BPB	0	genome.wustl.edu	37	chr14	103404703	103404703	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aggctggcgagccaggttggTgggagcggggcccggccttt	20	10	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	14	103404703	103404703	T	G	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.4873	p.T1625P	0.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	155	0	0	53	12	18.46	-	-	-	G	103404703	T	G	103404703	3	3	68	1	0	0	0	0	1	0	0	0	3102	1696	59	5	274	5	CDC42BPB	14	103404703	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	78494490	103404703	3944837	64	4870										
AHNAK2	0	genome.wustl.edu	37	chr14	105421045	105421045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggctctgcctgcctctccccAcccttggtttggagatgagt	11	14	2	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	14	105421045	105421045	A	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.743	p.V248G	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	72	0	0	47	15	23.81	-	-	-	C	105421045	A	C	105421045	3	2	68	1	0	0	0	0	1	0	0	0	415	159	6	5	16648	5	AHNAK2	14	105421045	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	2016342	105421045	1928495	65	4871										
TUBGCP4	0	genome.wustl.edu	37	chr15	43668321	43668321	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gcaggacttccctttcctccAccccagtgagaccagtgtcc	8	17	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	15	43668321	43668321	A	C	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.104	p.H35P	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	241	0	0	63	14	17.95	-	-	-	C	43668321	A	C	43668321	3	2	68	1	0	0	0	0	1	0	0	0	16865	159	6	5	110	5	TUBGCP4	15	43668321	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		43668321	58863071	66	4872										
SMAD3	0	genome.wustl.edu	37	chr15	67479838	67479838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cttcgtcaaaggctggggagCggagtacaggtcagttatgg	16	7	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	15	67479838	67479838	C	T	SNP	SMAD3	ENST00000327367	human	ensembl	69_37n	1	known	missense	c.1145	p.A382V	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949	214	0	0	61	26	28.89	-	-	-	T	67479838	C	T	67479838	3	4	68	1	0	0	0	0	1	0	0	0	14848	768	27	1	1253	1	SMAD3	15	67479838	Missense_Mutation	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	23811517	67479838	35051554	67	4873										
CSPG4	0	genome.wustl.edu	37	chr15	75982208	75982208	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ccaagcctcaggggccagggTggagaaagcttcataatgtc	13	10	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	15	75982208	75982208	T	G	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.1198	p.T400P	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	27	0	0	11	6	35.29	-	-	-	G	75982208	T	G	75982208	3	3	68	1	0	0	0	0	1	0	0	0	3992	1696	59	5	5802	5	CSPG4	15	75982208	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	8502370	75982208	26549184	68	4874										
ITFG3	0	genome.wustl.edu	37	chr16	314064	314064	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgtcctgtgtagcctagcccTcccgagcctccctgggggtc	12	17	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	314064	314064	T	C	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	missense	c.1238	p.L413P	0.076	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	62	0	0	23	6	20.69	-	-	-	C	314064	T	C	314064	3	2	68	1	0	0	0	0	1	0	0	0	7925	1551	54	5	1272	5	ITFG3	16	314064	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		314064	90040689	69	4875										
SRCAP	0	genome.wustl.edu	37	chr16	30736382	30736382	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgacgccagccccccccaccAcctcgttcccctttttatct	4	22	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	30736382	30736382	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.5637	p.P1879	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	50	0	0	15	6	28.57	-	-	-	C	30736382	A	C	30736382	2	2	68	1	0	0	0	0	0	0	0	1	15226	146	6	5		5	SRCAP	16	30736382	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	30422318	30736382	59618371	70	4876										
CDH16	0	genome.wustl.edu	37	chr16	66944217	66944217	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgtggggttgggaccaagggTgaagctgtagggaccgtgcc	19	8	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	66944217	66944217	T	G	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	missense	c.2113	p.T705P	0.979	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	285	2	0.69	71	15	17.05	-	-	-	G	66944217	T	G	66944217	3	3	68	1	0	0	0	0	1	0	0	0	3130	1696	59	5	392	5	CDH16	16	66944217	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	36207835	66944217	23410536	71	4877										
CDH1	0	genome.wustl.edu	37	chr16	68867233	68867234	+	Frame_Shift_Ins	INS	-	-	TGAT													0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gaccccacagccccgccttaINStgattctctgctcgtgtttg							TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	68867233	68867234	-	TGAT	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2480_2481	p.S829fs	1.000:0.967	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	129	0	0	52	20	27.78	-	-	-	TGAT	68867234	-	TGAT	68867233	7	5	68	1	0	1	1	0	0	0	0	0	3124	449	16	0	2542	0	CDH1	16	68867233	Frame_Shift_Ins	INS	-	TCGA-A2-A0T6-01A-11D-A099-09	1923016	68867233	21487520	72	4878										
GAN	0	genome.wustl.edu	37	chr16	81397481	81397481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tggtgaaaaggagctgatttCcatggagtgttacgatattt	12	4	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	81397481	81397481	C	A	SNP	GAN	ENST00000248272	human	ensembl	69_37n	1	known	missense	c.1169	p.S390Y	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000127688	397	0	0	189	25	11.68	-	-	-	A	81397481	C	A	81397481	3	1	68	1	0	0	0	0	1	0	0	0	6282	855	30	2	1195	2	GAN	16	81397481	Missense_Mutation	SNP	C	TCGA-A2-A0T6-01A-11D-A099-09	12530248	81397481	8957272	73	4879										
KIAA0182	0	genome.wustl.edu	37	chr16	85667564	85667564	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cttcgctagggatgctttccAccgcgaccaggaccaccgcc	10	17	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	16	85667564	85667564	A	C	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	missense	c.52	p.T18P	1.000	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	123	1	0.8	26	7	21.21	-	-	-	C	85667564	A	C	85667564	3	2	68	1	0	0	0	0	1	0	0	0	8211	159	6	5	58	5	KIAA0182	16	85667564	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	4270083	85667564	4687189	74	4880										
FLII	0	genome.wustl.edu	37	chr17	18155869	18155869	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aagtttcctcagctttgggcAcctgtgaagacagggccagc	12	11	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	18155869	18155869	A	C	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.1015	p.C339G	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	58	0	0	37	5	11.9	-	-	-	C	18155869	A	C	18155869	3	2	68	1	0	0	0	0	1	0	0	0	5971	173	6	5	2878	5	FLII	17	18155869	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		18155869	63039341	75	4881										
SHMT1	0	genome.wustl.edu	37	chr17	18232119	18232119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aggcgaagctctcaacctccTcccggagagcctgcacggcc	11	17	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	18232119	18232119	T	C	SNP	SHMT1	ENST00000316694	human	ensembl	69_37n	-1	known	missense	c.1397	p.E466G	0.868	superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT1	HGNC	ENSG00000176974	71	0	0	40	6	13.04	-	-	-	C	18232119	T	C	18232119	3	2	68	1	0	0	0	0	1	0	0	0	14374	1551	54	5	58	5	SHMT1	17	18232119	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	76250	18232119	62963091	76	4882										
LGALS9C	0	genome.wustl.edu	37	chr17	18390968	18390968	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tctcctctggcaggtgatggTgaacgggagcctcttcgtgc	14	11	3	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	18390968	18390968	T	G	SNP	LGALS9C	ENST00000328114	human	ensembl	69_37n	1	known	missense	c.341	p.V114G	0.999	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS9C	HGNC	ENSG00000171916	70	0	0	26	4	13.33	-	-	-	G	18390968	T	G	18390968	3	3	68	1	0	0	0	0	1	0	0	0	8805	1696	59	5	355	5	LGALS9C	17	18390968	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	158849	18390968	62804242	77	4883										
ERBB2	0	genome.wustl.edu	37	chr17	37879658	37879658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgggatcctcatcaagcgacGgcagcagaagatccggaagt	13	10	2	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	37879658	37879658	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2033	p.R678Q	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	246	0	0	79	25	23.81	-	-	-	A	37879658	G	A	37879658	3	1	68	1	0	0	0	0	1	0	0	0	5243	1116	39	1	2099	1	ERBB2	17	37879658	Missense_Mutation	SNP	G	TCGA-A2-A0T6-01A-11D-A099-09	19488690	37879658	43315552	78	4884										
ERBB2	0	genome.wustl.edu	37	chr17	37880219	37880219	+	Nonsense_Mutation	SNP	T	T	A													0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ttccagtggccatcaaagtgTtgagggaaaacacatccccc							TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	37880219	37880219	T	A	SNP	ERBB2	ENST00000580074	human	ensembl	69_37n	1	novel	nonsense	c.369	p.C123*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERBB2	HGNC	ENSG00000141736	195	0	0	115	45	28.12	-	-	-	A	37880219	T	A	37880219	4	1	68	1	0	0	0	0	0	1	0	0	5243	1722	60	5	2337	5	ERBB2	17	37880219	Nonsense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	561	37880219	43314991	79	4885	38	2								
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	G													0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tccagtggccatcaaagtgtTgagggaaaacacatccccca							TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	37880220	37880220	T	G	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755W	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	194	0	0	115	46	28.57	-	-	-	G	37880220	T	G	37880220	3	3	68	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	1	37880220	43314990	80	4886	38	2								
AARSD1	0	genome.wustl.edu	37	chr17	41103846	41103846	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agggtctccacagacgcaggTggccctgccagtaagaagag	14	11	1	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	41103846	41103846	T	G	SNP	AARSD1	ENST00000409399	human	ensembl	69_37n	-1	known	silent	c.1596	p.P532	0.005	NULL	pfam_tRNA_SAD,pfam_CS_domain,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS-like_domain,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	AARSD1	HGNC	ENSG00000108825	72	0	0	37	12	23.53	-	-	-	G	41103846	T	G	41103846	2	3	68	1	0	0	0	0	0	0	0	1	21	1683	59	5		5	AARSD1	17	41103846	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	3223626	41103846	40091364	81	4887										
C17orf28	0	genome.wustl.edu	37	chr17	72948400	72948400	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tctccacctgcggaaccagcAcctgcagcagcctcatgatg	9	16	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	72948400	72948400	A	C	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	missense	c.2108	p.V703G	1.000	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	79	0	0	36	8	18.18	-	-	-	C	72948400	A	C	72948400	3	2	68	1	0	0	0	0	1	0	0	0	1868	159	6	5	270	5	C17orf28	17	72948400	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	31844554	72948400	8246810	82	4888										
FBF1	0	genome.wustl.edu	37	chr17	73924155	73924155	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ttctcactggctactgacccAcctgcaggcttggggtggtt	12	12	1	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	73924155	73924155	A	C	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	splice_site	c.355+2	e6+2	0.000	-	-	-	no_errors	FBF1	HGNC	ENSG00000188878	161	1	0.62	111	39	26	-	-	-	C	73924155	A	C	73924155	5	2	68	1	0	0	0	0	0	0	1	0	5741	173	6	5	3136	5	FBF1	17	73924155	Splice_Site	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	975755	73924155	7271055	83	4889										
C17orf101	0	genome.wustl.edu	37	chr17	80356194	80356194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agtcgaaggagccgtaggtcAcctgagggcagagccgggag	18	9	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	17	80356194	80356194	A	C	SNP	C17orf101	ENST00000329197	human	ensembl	69_37n	-1	known	missense	c.701	p.V234G	1.000	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	C17orf101	HGNC	ENSG00000181396	83	0	0	40	11	21.57	-	-	-	C	80356194	A	C	80356194	3	2	68	1	0	0	0	0	1	0	0	0	1861	173	6	5	443	5	C17orf101	17	80356194	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	6432039	80356194	839016	84	4890										
PIP5K1C	0	genome.wustl.edu	37	chr19	3633481	3633481	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggggggcctgggcgctatagTggagcggggagtacacccag	20	9	0	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	3633481	3633481	T	G	SNP	PIP5K1C	ENST00000335312	human	ensembl	69_37n	-1	known	missense	c.1958	p.H653P	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	49	0	0	19	5	20.83	-	-	-	G	3633481	T	G	3633481	3	3	68	1	0	0	0	0	1	0	0	0	12015	1696	59	5	56	5	PIP5K1C	19	3633481	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09		3633481	55495502	85	4891										
XAB2	0	genome.wustl.edu	37	chr19	7687733	7687733	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	acacgcttgccaggtcatccAcctgcttgaagttcaccttg	8	14	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	7687733	7687733	A	C	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	missense	c.1286	p.V429G	1.000	smart_HAT,pfscan_TPR-contain_dom	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	131	0	0	41	6	12.77	-	-	-	C	7687733	A	C	7687733	3	2	68	1	0	0	0	0	1	0	0	0	17515	159	6	5	1321	5	XAB2	19	7687733	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	4054252	7687733	51441250	86	4892										
MUC16	0	genome.wustl.edu	37	chr19	8976382	8976382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cggggcccacagggtcagggTggtaggtgcaggtggtgtcc	20	9	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	8976382	8976382	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.42446	p.H14149P	0.000	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	47	0	0	57	8	12.31	-	-	-	G	8976382	T	G	8976382	3	3	68	1	0	0	0	0	1	0	0	0	10045	1696	59	5	1117	5	MUC16	19	8976382	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	1288649	8976382	50152601	87	4893										
ANGPTL6	0	genome.wustl.edu	37	chr19	10205446	10205446	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgacttacccacaggcttggTggggaccgcagggtgacctg	15	12	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	10205446	10205446	T	G	SNP	ANGPTL6	ENST00000253109	human	ensembl	69_37n	-1	known	missense	c.751	p.T251P	0.992	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL6	HGNC	ENSG00000130812	124	0	0	72	14	16.09	-	-	-	G	10205446	T	G	10205446	3	3	68	1	0	0	0	0	1	0	0	0	618	1696	59	5	677	5	ANGPTL6	19	10205446	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	1229064	10205446	48923537	88	4894										
FDX1L	0	genome.wustl.edu	37	chr19	10426603	10426603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agtgcccccaggtctgttccAccaggtgcccctggcagcct	11	17	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	10426603	10426603	A	C	SNP	FDX1L	ENST00000393708	human	ensembl	69_37n	-1	known	missense	c.70	p.W24G	0.018	NULL	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	-	no_errors	FDX1L	Clone_based_vega_gene	ENSG00000267673	26	0	0	29	6	16.67	-	-	-	C	10426603	A	C	10426603	3	2	68	1	0	0	0	0	1	0	0	0	5851	159	6	5	501	5	FDX1L	19	10426603	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	221157	10426603	48702380	89	4895										
TMEM205	0	genome.wustl.edu	37	chr19	11453680	11453680	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tggctgcctggtacctccccAcccaggcctcgctccttctc	8	20	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	11453680	11453680	A	C	SNP	TMEM205	ENST00000592952	human	ensembl	69_37n	-1	putative	missense	c.217	p.W73G	0.007	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM205	HGNC	ENSG00000105518	128	0	0	49	11	18.33	-	-	-	C	11453680	A	C	11453680	3	2	68	1	0	0	0	0	1	0	0	0	16225	146	6	5	192	5	TMEM205	19	11453680	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	1027077	11453680	47675303	90	4896										
MYO9B	0	genome.wustl.edu	37	chr19	17311482	17311482	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cagcatcgccacgctgcaggTgagaagcgcaccaaggaacc	12	14	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	17311482	17311482	T	G	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	silent	c.4407	p.G1469	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	204	2	0.96	87	20	18.52	-	-	-	G	17311482	T	G	17311482	2	3	68	1	0	0	0	0	0	0	0	1	10157	1683	59	5		5	MYO9B	19	17311482	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	5857802	17311482	41817501	91	4897										
HPN	0	genome.wustl.edu	37	chr19	35540195	35540195	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agcatggtgtctgttgcaggTggccggactgtgccatgctg	16	9	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	35540195	35540195	T	G	SNP	HPN	ENST00000262626	human	ensembl	69_37n	1	known	silent	c.18	p.G6	1.000	NULL	pfam_Peptidase_S1_S6,pfam_Hepsin-SRCR,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707	90	0	0	39	9	18.37	-	-	-	G	35540195	T	G	35540195	2	3	68	1	0	0	0	0	0	0	0	1	7387	1710	59	5		5	HPN	19	35540195	Silent	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	18228713	35540195	23588788	92	4898										
DMRTC2	0	genome.wustl.edu	37	chr19	42351833	42351833	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cagggtcatggctgcccaggTggccttgcgtaggcagcagg	17	11	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	42351833	42351833	T	G	SNP	DMRTC2	ENST00000269945	human	ensembl	69_37n	1	known	missense	c.254	p.V85G	1.000	smart_DM_DNA-bd,pfscan_DM_DNA-bd	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025	57	0	0	28	8	22.22	-	-	-	G	42351833	T	G	42351833	3	3	68	1	0	0	0	0	1	0	0	0	4627	1696	59	5	260	5	DMRTC2	19	42351833	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	6811638	42351833	16777150	93	4899										
CBLC	0	genome.wustl.edu	37	chr19	45285673	45285673	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gcagctcctggcagtcaaccAcccaggctacatggccttcc	9	17	1	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	45285673	45285673	A	C	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	missense	c.704	p.H235P	1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	114	1	0.85	35	9	20	-	-	-	C	45285673	A	C	45285673	3	2	68	1	0	0	0	0	1	0	0	0	2727	159	6	5	718	5	CBLC	19	45285673	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	2933840	45285673	13843310	94	4900										
SIX5	0	genome.wustl.edu	37	chr19	46269274	46269274	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ctgggagacgagcatgctggTggggaaggtggcggtgagga	22	5	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	46269274	46269274	T	G	SNP	SIX5	ENST00000317578	human	ensembl	69_37n	-1	known	missense	c.1705	p.T569P	0.992	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX5	HGNC	ENSG00000177045	101	1	0.98	40	5	10.87	-	-	-	G	46269274	T	G	46269274	3	3	68	1	0	0	0	0	1	0	0	0	14439	1696	59	5	518	5	SIX5	19	46269274	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	983601	46269274	12859709	95	4901										
MYBPC2	0	genome.wustl.edu	37	chr19	50939296	50939296	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	cgcagtggtcgtggccaaggTgaacgggaaggagctcccag	17	10	0	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	50939296	50939296	T	G	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.224	p.V75G	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	125	0	0	51	11	17.46	-	-	-	G	50939296	T	G	50939296	3	3	68	1	0	0	0	0	1	0	0	0	10084	1696	59	5	238	5	MYBPC2	19	50939296	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	4670022	50939296	8189687	96	4902										
KLK3	0	genome.wustl.edu	37	chr19	51358236	51358236	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gggtcccggttgtcttcctcAccctgtccgtgacgtggatt	12	13	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	51358236	51358236	A	C	SNP	KLK3	ENST00000326003	human	ensembl	69_37n	1	known	missense	c.25	p.T9P	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK3	HGNC	ENSG00000142515	107	0	0	58	14	19.18	-	-	-	C	51358236	A	C	51358236	3	2	68	1	0	0	0	0	1	0	0	0	8458	159	6	5	27	5	KLK3	19	51358236	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	418940	51358236	7770747	97	4903										
FIZ1	0	genome.wustl.edu	37	chr19	56109047	56109047	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggttggctaggttgaagctgTgcttgaaacccttgccgcag	14	9	0	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	19	56109047	56109047	T	G	SNP	FIZ1	ENST00000221665	human	ensembl	69_37n	-1	known	missense	c.185	p.H62P	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943	57	0	0	25	4	13.79	-	-	-	G	56109047	T	G	56109047	3	3	68	1	0	0	0	0	1	0	0	0	5946	1696	59	5	1313	5	FIZ1	19	56109047	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	4750811	56109047	3019936	98	4904										
XKR7	0	genome.wustl.edu	37	chr20	30556255	30556255	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	aacacacctacttcagcctcAccttgctgttcgtgctcctg	6	16	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	20	30556255	30556255	A	C	SNP	XKR7	ENST00000217299	human	ensembl	69_37n	1	known	missense	c.277	p.T93P	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000101321	120	1	0.83	26	6	18.75	-	-	-	C	30556255	A	C	30556255	3	2	68	1	0	0	0	0	1	0	0	0	17533	159	6	5	279	5	XKR7	20	30556255	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		30556255	32469265	99	4905										
UBE2C	0	genome.wustl.edu	37	chr20	44441931	44441931	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	ggatcgtcctgtggatctggTgagtataccctgagctgagc	14	9	1	3			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	20	44441931	44441931	T	G	SNP	UBE2C	ENST00000372568	human	ensembl	69_37n	1	known	splice_site	c.1+2	e0+2	0.000	-	-	-	no_errors	UBE2C	HGNC	ENSG00000175063	26	0	0	24	5	17.24	-	-	-	G	44441931	T	G	44441931	5	3	68	1	0	0	0	0	0	0	1	0	16943	1710	59	5		5	UBE2C	20	44441931	Splice_Site	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	13885676	44441931	18583589	100	4906										
GNAZ	0	genome.wustl.edu	37	chr22	23465518	23465518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gaccaaggagatctactcccActtcacctgcgccaccgaca	7	17	2	1			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	22	23465518	23465518	A	C	SNP	GNAZ	ENST00000248996	human	ensembl	69_37n	1	known	missense	c.968	p.H323P	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	217	1	0.46	49	16	24.62	-	-	-	C	23465518	A	C	23465518	3	2	68	1	0	0	0	0	1	0	0	0	6566	159	6	5	974	5	GNAZ	22	23465518	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		23465518	27839048	101	4907										
BCR	0	genome.wustl.edu	37	chr22	23656229	23656229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	tgccggaggccaacctgctcAccttccttttccttctggac	8	16	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	22	23656229	23656229	A	C	SNP	BCR	ENST00000305877	human	ensembl	69_37n	1	known	missense	c.3532	p.T1178P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	168	1	0.59	47	6	11.11	-	-	-	C	23656229	A	C	23656229	3	2	68	1	0	0	0	0	1	0	0	0	1392	159	6	5	3614	5	BCR	22	23656229	Missense_Mutation	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09	190711	23656229	27648337	102	4908										
PMM1	0	genome.wustl.edu	37	chr22	41980363	41980363	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	gcagcagctcctcccccaggTggttctggatggtctggcca	13	14	2	0			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	22	41980363	41980363	T	G	SNP	PMM1	ENST00000216259	human	ensembl	69_37n	-1	known	missense	c.296	p.H99P	1.000	pfam_PMM,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM1	HGNC	ENSG00000100417	104	0	0	33	7	17.5	-	-	-	G	41980363	T	G	41980363	3	3	68	1	0	0	0	0	1	0	0	0	12210	1696	59	5	512	5	PMM1	22	41980363	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	18324134	41980363	9324203	103	4909										
NHSL2	0	genome.wustl.edu	37	chrX	71359432	71359432	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agctcagagtctcttgcctcAccttccacctccagagccac	6	18	3	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	X	71359432	71359432	A	C	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	silent	c.2034	p.S678	0.992	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	55	0	0	39	9	18.75	-	-	-	C	71359432	A	C	71359432	2	2	68	1	0	0	0	0	0	0	0	1	10484	146	6	5		5	NHSL2	23	71359432	Silent	SNP	A	TCGA-A2-A0T6-01A-11D-A099-09		71359432	83911128	104	4910										
HS6ST2	0	genome.wustl.edu	37	chrX	131762942	131762942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00970873786407767	1	0.904872247913239	1.0536013400335	NA	1.0536013400335	1	1	0	agggacagtccataaactctTtgagggggcagccagaccag	13	10	1	2			TCGA-A2-A0T6-01A-11D-A099-09	TCGA-A2-A0T6-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4dcb280-c309-4ebb-a58d-e6389a0306ee	f0f5e37a-90f7-4800-b7d2-a514e8be3a13	X	131762942	131762942	T	C	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1247	p.K416R	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	162	0	0	62	23	27.06	-	-	-	C	131762942	T	C	131762942	3	2	68	1	0	0	0	0	1	0	0	0	7422	1841	64	5	694	5	HS6ST2	23	131762942	Missense_Mutation	SNP	T	TCGA-A2-A0T6-01A-11D-A099-09	60403510	131762942	23507618	105	4911										
GBP6	0	genome.wustl.edu	37	chr1	89844123	89844123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gagctgaagttgaacggtcaCcctatcacagaagatgaata	10	8	2	5			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	1	89844123	89844123	C	A	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	missense	c.576	p.H192Q	0.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	188	0	0	105	38	26.39	-	-	-	A	89844123	C	A	89844123	3	1	69	1	0	0	0	0	1	0	0	0	6328	506	18	4	590	4	GBP6	1	89844123	Missense_Mutation	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09		89844123	159406498	1	4912										
RBM15	0	genome.wustl.edu	37	chr1	110883275	110883281	+	Frame_Shift_Del	DEL	CGGCTTT	CGGCTTT	-													0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	cgcggccagactagtacttaCggctttctcaaatttgagaa							TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	CGGCTTT	CGGCTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	1	110883275	110883281	CGGCTTT	-	DEL	RBM15	ENST00000369784	human	ensembl	69_37n	1	known	frame_shift_del	c.1248_1254	p.G417fs	1.000:1.000:1.000:0.753:1.000:1.000:0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	78	0	0	38	7	14.89	-	-	-	-	110883281	CGGCTTT	-	110883275	7	5	69	1	0	1	0	1	0	0	0	0	13199	547	19	0	1250	0	RBM15	1	110883275	Frame_Shift_Del	DEL	CGGCTTT	TCGA-A2-A0T7-01A-21D-A099-09	21039152	110883275	138367346	2	4913										
IARS2	0	genome.wustl.edu	37	chr1	220269535	220269535	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gatggacctccttatgcaaaCggtgaccctcatgttggaca	10	11	1	1			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	1	220269535	220269535	C	T	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	silent	c.357	p.N119	0.999	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	233	0	0	134	26	16.15	-	-	-	T	220269535	C	T	220269535	2	4	69	1	0	0	0	0	0	0	0	1	7528	535	19	1		1	IARS2	1	220269535	Silent	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09	109386260	220269535	28981086	3	4914										
FMN2	0	genome.wustl.edu	37	chr1	240492411	240492411	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gaactcgaaaaaatagaaaaGcatggccgatcttccaaaga	8	8	1	2			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	1	240492411	240492411	G	C	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4251	p.K1417N	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	130	0	0	141	25	14.97	-	-	-	C	240492411	G	C	240492411	3	2	69	1	0	0	0	0	1	0	0	0	5996	962	34	4	4285	4	FMN2	1	240492411	Missense_Mutation	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09	20222876	240492411	8758210	4	4915										
ALLC	0	genome.wustl.edu	37	chr2	3729305	3729305	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gtttgaagccattgctgaggTacatctcccccaaatgaatt	8	10	1	3			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	2	3729305	3729305	T	C	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	1	known	splice_site	c.378+2	e5+2	0.953	-	-	-	no_errors	ALLC	HGNC	ENSG00000151360	134	0	0	73	14	16.09	-	-	-	C	3729305	T	C	3729305	5	2	69	1	0	0	0	0	0	0	1	0	534	1652	57	5	398	5	ALLC	2	3729305	Splice_Site	SNP	T	TCGA-A2-A0T7-01A-21D-A099-09		3729305	239470068	5	4916										
PTPN23	0	genome.wustl.edu	37	chr3	47451454	47451454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ccgccgccacggcccacagcCccaaagccgctgctgccccg	10	23	0	0			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	3	47451454	47451454	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	silent	c.2166	p.A722	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	28	0	0	26	8	23.53	-	-	-	T	47451454	C	T	47451454	2	4	69	1	0	0	0	0	0	0	0	1	12871	610	22	4		4	PTPN23	3	47451454	Silent	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09		47451454	150570976	6	4917										
COL7A1	0	genome.wustl.edu	37	chr3	48629346	48629346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ctgaccagtctcacgccgccAttccaaccggtagccacggg	10	17	1	1			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	3	48629346	48629346	A	G	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.1342	p.W448R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	92	0	0	56	16	22.22	-	-	-	G	48629346	A	G	48629346	3	3	69	1	0	0	0	0	1	0	0	0	3734	217	8	5	7928	5	COL7A1	3	48629346	Missense_Mutation	SNP	A	TCGA-A2-A0T7-01A-21D-A099-09	1177892	48629346	149393084	7	4918										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	125	0	0	107	20	15.75	-	-	-	A	178936082	G	A	178936082	3	1	69	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09	130306736	178936082	19086348	8	4919										
PIK3CA	0	genome.wustl.edu	37	chr3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gagtatttcatgaaacaaatGaatgatgcacatcatggtgg	10	5	2	3			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	3	178952074	178952074	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3129	p.M1043I	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	134	0	0	41	12	21.82	-	-	-	A	178952074	G	A	178952074	3	1	69	1	0	0	0	0	1	0	0	0	11987	1290	45	2	3207	2	PIK3CA	3	178952074	Missense_Mutation	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09	15992	178952074	19070356	9	4920										
NEK1	0	genome.wustl.edu	37	chr4	170506525	170506525	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gagagagaaacttttcaatgCgtttggctataaaacctttc	8	7	1	2			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	4	170506525	170506525	C	A	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	missense	c.782	p.R261L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	179	0	0	74	12	13.95	-	-	-	A	170506525	C	A	170506525	3	1	69	1	0	0	0	0	1	0	0	0	10393	768	27	3	3098	3	NEK1	4	170506525	Missense_Mutation	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09		170506525	20647751	10	4921										
HLA-B	0	genome.wustl.edu	37	chr6	31322932	31322933	+	Frame_Shift_Ins	INS	-	-	AG													0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gcgaccacagctccgatgacINScacaactgctaggacagcca							TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	6	31322932	31322933	-	AG	INS	HLA-B	ENST00000412585	human	ensembl	69_37n	-1	known	frame_shift_ins	c.964_963	p.V321fs	0.000:0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-B	HGNC	ENSG00000234745	40	0	0	38	5	11.63	-	-	-	AG	31322933	-	AG	31322932	7	5	69	1	0	1	1	0	0	0	0	0	7247	507	18	0	136	0	HLA-B	6	31322932	Frame_Shift_Ins	INS	-	TCGA-A2-A0T7-01A-21D-A099-09		31322932	139792135	11	4922	39	2								
HLA-B	0	genome.wustl.edu	37	chr6	31322933	31322934	+	Frame_Shift_Ins	INS	-	-	T													0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	cgaccacagctccgatgaccINSacaactgctaggacagccag							TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	6	31322933	31322934	-	T	INS	HLA-B	ENST00000412585	human	ensembl	69_37n	-1	known	frame_shift_ins	c.963_962	p.V322fs	0.000:0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-B	HGNC	ENSG00000234745	41	0	0	39	5	11.36	-	-	-	T	31322934	-	T	31322933	7	5	69	1	0	1	1	0	0	0	0	0	7247	581	21	0	137	0	HLA-B	6	31322933	Frame_Shift_Ins	INS	-	TCGA-A2-A0T7-01A-21D-A099-09	1	31322933	139792134	12	4923	39	2								
CD164	0	genome.wustl.edu	37	chr6	109703447	109703448	+	In_Frame_Ins	INS	-	-	GCCGAG													0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gcgggagggacgtcaccggcINSgccgaggttacgttggagat							TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	6	109703447	109703448	-	GCCGAG	INS	CD164	ENST00000310786	human	ensembl	69_37n	-1	known	in_frame_ins	c.135_134	p.46in_frame_insSA	0.002:0.000	pfam_CD164_MGC24	pfam_CD164_MGC24,prints_CD164_MGC24	-	no_errors	CD164	HGNC	ENSG00000135535	56	0	0	24	3	11.11	-	-	-	GCCGAG	109703448	-	GCCGAG	109703447	7	5	69	1	0	1	1	0	0	0	0	0	2998	755	27	0	533	0	CD164	6	109703447	In_Frame_Ins	INS	-	TCGA-A2-A0T7-01A-21D-A099-09	78380514	109703447	61411620	13	4924										
ANKRD2	0	genome.wustl.edu	37	chr10	99337563	99337563	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ctttggatcaccagaaactcCgaggagacgcacgccagaag	11	12	1	3			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	10	99337563	99337563	C	T	SNP	ANKRD2	ENST00000307518	human	ensembl	69_37n	1	known	nonsense	c.175	p.R59*	0.160	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD2	HGNC	ENSG00000165887	27	0	0	24	7	22.58	-	-	-	T	99337563	C	T	99337563	4	4	69	1	0	0	0	0	0	1	0	0	647	644	23	1	181	1	ANKRD2	10	99337563	Nonsense_Mutation	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09		99337563	36197184	14	4925										
DIO2	0	genome.wustl.edu	37	chr14	80672615	80672619	+	Frame_Shift_Del	DEL	TATAA	TATAA	-													0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gtagaccagtagtctgctttTataagcttcatatactagtc							TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	TATAA	TATAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	14	80672615	80672619	TATAA	-	DEL	DIO2	ENST00000555750	human	ensembl	69_37n	-1	known	frame_shift_del	c.289_285	p.Y96fs	0.034:0.001:0.001:0.000:0.001	NULL	pfam_Iodothyronine_deiodinase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	pseudogene	DIO2	HGNC	ENSG00000211448	234	0	0	160	43	20.67	-	-	-	-	80672619	TATAA	-	80672615	7	5	69	1	0	1	0	1	0	0	0	0	4561	1763	61	0	648	0	DIO2	14	80672615	Frame_Shift_Del	DEL	TATAA	TCGA-A2-A0T7-01A-21D-A099-09		80672615	26676925	15	4926										
ATPBD4	0	genome.wustl.edu	37	chr15	35814394	35814394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ttggagtcctgtaaacaatcGcctggctgcccactttcaaa	8	12	1	0			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	15	35814394	35814394	G	A	SNP	ATPBD4	ENST00000440392	human	ensembl	69_37n	-1	known	missense	c.398	p.A133V	1.000	NULL	pfam_DUF71_ATP-bd_dom	-	no_errors	ATPBD4	HGNC	ENSG00000134146	163	0	0	48	16	25	-	-	-	A	35814394	G	A	35814394	3	1	69	1	0	0	0	0	1	0	0	0	1206	1087	38	1	619	1	ATPBD4	15	35814394	Missense_Mutation	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09		35814394	66716998	16	4927										
LRRK1	0	genome.wustl.edu	37	chr15	101565085	101565085	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	gtcaaccagtgcttcttcacGgacaaggccctgtacgtggt	11	12	3	0			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	15	101565085	101565085	G	A	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	silent	c.2145	p.T715	0.018	pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	67	0	0	26	8	22.86	-	-	-	A	101565085	G	A	101565085	2	1	69	1	0	0	0	0	0	0	0	1	9098	1103	39	1		1	LRRK1	15	101565085	Silent	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09	65750691	101565085	966307	17	4928										
VPS4B	0	genome.wustl.edu	37	chr18	61071018	61071018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	ggctccttcaagtccagcaaCgtcactccatttcacatttg	6	14	3	0			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	18	61071018	61071018	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.406	p.V136I	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	174	0	0	92	17	15.45	-	-	-	T	61071018	C	T	61071018	3	4	69	1	0	0	0	0	1	0	0	0	17310	536	19	1	956	1	VPS4B	18	61071018	Missense_Mutation	SNP	C	TCGA-A2-A0T7-01A-21D-A099-09		61071018	17006230	18	4929										
ZNF548	0	genome.wustl.edu	37	chr19	57910903	57910903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	agacaccagagagtccacacGggagaaaggccttatgagtg	13	9	0	4			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	19	57910903	57910903	G	A	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	silent	c.1284	p.T428	0.893	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	82	0	0	48	16	25	-	-	-	A	57910903	G	A	57910903	2	1	69	1	0	0	0	0	0	0	0	1	18076	1103	39	1		1	ZNF548	19	57910903	Silent	SNP	G	TCGA-A2-A0T7-01A-21D-A099-09		57910903	1218080	19	4930										
CXorf65	0	genome.wustl.edu	37	chrX	70324242	70324242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.843743695016429	1.2156862745098	0	1.35076252723312	0.333333333333333	0.930327025915261	0	tctccagggcatcacattgtAtgcgcagtgcaactaagaac	9	11	2	1			TCGA-A2-A0T7-01A-21D-A099-09	TCGA-A2-A0T7-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3ea4d98d-f8d9-433e-94f1-b0199bfdb198	605ddfcb-4ee9-4dd3-bc87-4460cb63662f	X	70324242	70324242	A	G	SNP	CXorf65	ENST00000374251	human	ensembl	69_37n	-1	known	missense	c.332	p.I111T	0.731	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165	81	0	0	141	37	20.79	-	-	-	G	70324242	A	G	70324242	3	3	69	1	0	0	0	0	1	0	0	0	4148	449	16	5	227	5	CXorf65	23	70324242	Missense_Mutation	SNP	A	TCGA-A2-A0T7-01A-21D-A099-09		70324242	84946318	20	4931										
MYOM3	0	genome.wustl.edu	37	chr1	24409111	24409111	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tgcttgaccctgatgggctcGgtggcggctgagctctcgcc	15	13	1	3			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	24409111	24409111	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	silent	c.2067	p.T689	0.020	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	25	0	0	39	13	25	-	-	-	A	24409111	G	A	24409111	2	1	70	1	0	0	0	0	0	0	0	1	10165	1103	39	1		1	MYOM3	1	24409111	Silent	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09		24409111	224841510	1	4932										
FAAH	0	genome.wustl.edu	37	chr1	46872015	46872015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	gttccgcttggaccccactgTgcctcccttgcccttcagag	9	17	1	1			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	46872015	46872015	T	C	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	missense	c.926	p.V309A	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	36	0	0	47	7	12.96	-	-	-	C	46872015	T	C	46872015	3	2	70	1	0	0	0	0	1	0	0	0	5393	1696	59	5	952	5	FAAH	1	46872015	Missense_Mutation	SNP	T	TCGA-A2-A0YC-01A-11D-A117-09	22462904	46872015	202378606	2	4933										
CKAP2L	0	genome.wustl.edu	37	chr2	113514535	113514535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	ctatattaagtgaccccacaGgttttcttgacagttctcct	6	11	2	2			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	2	113514535	113514535	G	T	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.413	p.P138H	0.017	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	174	0	0	128	76	37.25	-	-	-	T	113514535	G	T	113514535	3	4	70	1	0	0	0	0	1	0	0	0	3473	1000	35	4	1848	4	CKAP2L	2	113514535	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09		113514535	129684838	3	4934										
PPARG	0	genome.wustl.edu	37	chr3	12447485	12447485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	agtccgctgacctccgggccCtggcaaaacatttgtatgac	10	13	0	2			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	12447485	12447485	C	G	SNP	PPARG	ENST00000287820	human	ensembl	69_37n	1	known	missense	c.724	p.L242V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	70	0	0	63	28	30.77	-	-	-	G	12447485	C	G	12447485	3	3	70	1	0	0	0	0	1	0	0	0	12372	680	24	4	742	4	PPARG	3	12447485	Missense_Mutation	SNP	C	TCGA-A2-A0YC-01A-11D-A117-09		12447485	185574945	4	4935										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	134	0	0	87	40	31.25	-	-	-	A	178936091	G	A	178936091	3	1	70	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09	166488606	178936091	19086339	5	4936										
C4orf29	0	genome.wustl.edu	37	chr4	128951784	128951784	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	gtgaaatccgatacttagaaGggggtcatattagtgcttat	11	5	1	2			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	4	128951784	128951784	G	C	SNP	C4orf29	ENST00000398965	human	ensembl	69_37n	1	known	missense	c.1198	p.G400R	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074	99	0	0	90	12	11.76	-	-	-	C	128951784	G	C	128951784	3	2	70	1	0	0	0	0	1	0	0	0	2280	1000	35	4	1236	4	C4orf29	4	128951784	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09		128951784	62202492	6	4937										
ANKRD32	0	genome.wustl.edu	37	chr5	94027917	94027917	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tcctttgcatgatgcactgtCaaacggacatgtagaaattg	9	8	1	2			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	94027917	94027917	C	T	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	1	known	missense	c.2651	p.S884L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	79	0	0	71	38	34.86	-	-	-	T	94027917	C	T	94027917	3	4	70	1	0	0	0	0	1	0	0	0	659	838	29	2	2725	2	ANKRD32	5	94027917	Missense_Mutation	SNP	C	TCGA-A2-A0YC-01A-11D-A117-09		94027917	86887343	7	4938										
DIAPH1	0	genome.wustl.edu	37	chr5	140903779	140903787	+	In_Frame_Del	DEL	CACCTGTCT	CACCTGTCT	-													0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	ttctagaagactgtccatcaCacctgtctcatcgccctctg							TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	CACCTGTCT	CACCTGTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	140903779	140903787	CACCTGTCT	-	DEL	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	in_frame_del	c.3595_3587	p.ETG1196in_frame_del	1.000:0.994:1.000:1.000:0.164:1.000:1.000:1.000:1.000	smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	64	0	0	60	18	23.08	-	-	-	-	140903787	CACCTGTCT	-	140903779	7	5	70	1	0	1	0	1	0	0	0	0	4554	478	17	0	234	0	DIAPH1	5	140903779	In_Frame_Del	DEL	CACCTGTCT	TCGA-A2-A0YC-01A-11D-A117-09	46875862	140903779	40011481	8	4939										
MATN2	0	genome.wustl.edu	37	chr8	98900392	98900392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	agatcgtcctcctccctgccGaggccagggagcggtcacgt	13	15	1	1			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	98900392	98900392	G	A	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.64	p.E22K	0.387	NULL	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	29	0	0	28	12	30	-	-	-	A	98900392	G	A	98900392	3	1	70	1	0	0	0	0	1	0	0	0	9405	1059	37	1	66	1	MATN2	8	98900392	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09		98900392	47463630	9	4940										
ANGPT1	0	genome.wustl.edu	37	chr8	108297075	108297075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	caccggagggatttccaaaaCcctgggaaacaatatagaga	10	9	0	1			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	108297075	108297075	C	A	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.1040	p.G347V	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	102	0	0	80	34	29.57	-	-	-	A	108297075	C	A	108297075	3	1	70	1	0	0	0	0	1	0	0	0	610	521	18	4	468	4	ANGPT1	8	108297075	Missense_Mutation	SNP	C	TCGA-A2-A0YC-01A-11D-A117-09	9396683	108297075	38066947	10	4941										
GREM1	0	genome.wustl.edu	37	chr15	33023223	33023223	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	cgaggaaggctgcaacagtcGcaccatcatcaaccgcttct	9	14	3	0			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	33023223	33023223	G	C	SNP	GREM1	ENST00000300177	human	ensembl	69_37n	1	known	missense	c.332	p.R111P	1.000	pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor	pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor	-	no_errors	GREM1	HGNC	ENSG00000166923	23	0	0	43	11	20.37	-	-	-	C	33023223	G	C	33023223	3	2	70	1	0	0	0	0	1	0	0	0	6812	1087	38	3	334	3	GREM1	15	33023223	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09		33023223	69508169	11	4942										
OR4F6	0	genome.wustl.edu	37	chr15	102346617	102346617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tcagaaaaaatcttcaggtgGtatattcaaggctttctcta	7	7	5	1			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	102346617	102346617	G	T	SNP	OR4F6	ENST00000328882	human	ensembl	69_37n	1	known	missense	c.695	p.G232V	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140	255	0	0	181	97	34.89	-	-	-	T	102346617	G	T	102346617	3	4	70	1	0	0	0	0	1	0	0	0	11139	1261	44	4	697	4	OR4F6	15	102346617	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09	69323394	102346617	184775	12	4943										
NCOR1	0	genome.wustl.edu	37	chr17	15984026	15984027	+	Frame_Shift_Ins	INS	-	-	AGGC													0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tgattatgagaagtcaaataINSagtgcctggtgttccctaag							TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	17	15984026	15984027	-	AGGC	INS	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3193_3192	p.Y1064fs	0.999:0.529	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	152	0	0	68	48	41.38	-	-	-	AGGC	15984027	-	AGGC	15984026	7	5	70	1	0	1	1	0	0	0	0	0	10307	362	13	0	4221	0	NCOR1	17	15984026	Frame_Shift_Ins	INS	-	TCGA-A2-A0YC-01A-11D-A117-09		15984026	65211184	13	4944										
ZNF90	0	genome.wustl.edu	37	chr19	20228851	20228855	+	Frame_Shift_Del	DEL	ATAAG	ATAAG	-													0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	attttcaaattcaaacagacAtaagataagagatactggaa							TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	ATAAG	ATAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	19	20228851	20228855	ATAAG	-	DEL	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	frame_shift_del	c.488_492	p.I165fs	0.010:0.012:0.000:0.000:0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	112	0	0	91	27	22.69	-	-	-	-	20228855	ATAAG	-	20228851	7	5	70	1	0	1	0	1	0	0	0	0	18292	217	8	0	502	0	ZNF90	19	20228851	Frame_Shift_Del	DEL	ATAAG	TCGA-A2-A0YC-01A-11D-A117-09		20228851	38900132	14	4945										
MYO18B	0	genome.wustl.edu	37	chr22	26291174	26291174	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tcagatggagaacgagttccTcagaaagcgtctgcagcaat	11	9	3	3			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	26291174	26291174	T	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.4595	p.L1532H	0.993	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	37	0	0	30	27	47.37	-	-	-	A	26291174	T	A	26291174	3	1	70	1	0	0	0	0	1	0	0	0	10138	1551	54	5	4701	5	MYO18B	22	26291174	Missense_Mutation	SNP	T	TCGA-A2-A0YC-01A-11D-A117-09		26291174	25013392	15	4946										
TNRC6B	0	genome.wustl.edu	37	chr22	40661511	40661511	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	tgggagtgttggatcttgggGtgcagctagggggccttctg	19	6	2	0			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	40661511	40661511	G	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.1277	p.G426V	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	77	0	0	73	28	27.72	-	-	-	T	40661511	G	T	40661511	3	4	70	1	0	0	0	0	1	0	0	0	16436	1261	44	4	1416	4	TNRC6B	22	40661511	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09	14370337	40661511	10643055	16	4947										
NKAP	0	genome.wustl.edu	37	chrX	119077497	119077497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	ctgggcttcggactcttcgaCgaactgcgacgtcttccccc	10	16	2	0			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	119077497	119077497	C	T	SNP	NKAP	ENST00000371410	human	ensembl	69_37n	-1	known	silent	c.72	p.S24	0.001	NULL	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	24	0	0	23	13	36.11	-	-	-	T	119077497	C	T	119077497	2	4	70	1	0	0	0	0	0	0	0	1	10511	523	19	1		1	NKAP	23	119077497	Silent	SNP	C	TCGA-A2-A0YC-01A-11D-A117-09		119077497	36193063	17	4948										
FGF13	0	genome.wustl.edu	37	chrX	137793117	137793117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.722627789076628	1.55288461538462	0	2.48461538461538	0.333333333333333	0.930327025915261	0	gttggatttctcgcgctcgcGggcttgcctcttctgacgga	13	12	3	1			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	137793117	137793117	G	T	SNP	FGF13	ENST00000315930	human	ensembl	69_37n	-1	known	missense	c.49	p.R17S	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	94	0	0	109	60	35.5	-	-	-	T	137793117	G	T	137793117	3	4	70	1	0	0	0	0	1	0	0	0	5888	1116	39	3	708	3	FGF13	23	137793117	Missense_Mutation	SNP	G	TCGA-A2-A0YC-01A-11D-A117-09	18715620	137793117	17477443	18	4949										
C1orf127	0	genome.wustl.edu	37	chr1	11017751	11017751	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	atgtccacatacagtcccatCaggctggcgtcttcaagaga	9	12	3	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	11017751	11017751	C	T	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	silent	c.615	p.L205	1.000	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	34	0	0	22	5	18.52	-	-	-	T	11017751	C	T	11017751	2	4	71	1	0	0	0	0	0	0	0	1	2013	813	29	2		2	C1orf127	1	11017751	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		11017751	238232870	1	4950										
C1QB	0	genome.wustl.edu	37	chr1	22987403	22987403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tcggccccaagggccccatgGgccctaaaggtggcccaggg	15	15	0	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	22987403	22987403	G	A	SNP	C1QB	ENST00000314933	human	ensembl	69_37n	1	known	missense	c.286	p.G96S	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QB	HGNC	ENSG00000173369	48	0	0	34	10	22.73	-	-	-	A	22987403	G	A	22987403	3	1	71	1	0	0	0	0	1	0	0	0	1974	1232	43	4	292	4	C1QB	1	22987403	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	11969652	22987403	226263218	2	4951										
FUBP1	0	genome.wustl.edu	37	chr1	78444657	78444657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	cgccaccagctgagccagaaGaggggggaggcactgttgaa	16	10	0	4			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	78444657	78444657	G	T	SNP	FUBP1	ENST00000436586	human	ensembl	69_37n	-1	known	missense	c.32	p.S11Y	0.117	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	62	0	0	44	7	13.73	-	-	-	T	78444657	G	T	78444657	3	4	71	1	0	0	0	0	1	0	0	0	6141	942	33	2	1982	2	FUBP1	1	78444657	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	55457254	78444657	170805964	3	4952										
TXNIP	0	genome.wustl.edu	37	chr1	145439000	145439000	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tcccagcagtgcaaacagacTtcggagtacctgcgctatga	10	12	0	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	145439000	145439000	T	C	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	1	known	silent	c.198	p.T66	0.829	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	142	0	0	70	37	34.58	-	-	-	C	145439000	T	C	145439000	2	2	71	1	0	0	0	0	0	0	0	1	16900	1596	56	5		5	TXNIP	1	145439000	Silent	SNP	T	TCGA-A2-A0YD-01A-11D-A10G-09	66994343	145439000	103811621	4	4953										
F11R	0	genome.wustl.edu	37	chr1	160970527	160970527	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	cgtgtcacggacttgaaggtGataccagttggcaagaaggt	14	7	1	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	160970527	160970527	G	C	SNP	F11R	ENST00000436182	human	ensembl	69_37n	-1	known	missense	c.294	p.I98M	0.986	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	F11R	HGNC	ENSG00000158769	101	0	0	46	9	16.36	-	-	-	C	160970527	G	C	160970527	3	2	71	1	0	0	0	0	1	0	0	0	5375	1280	45	2	645	2	F11R	1	160970527	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	15531527	160970527	88280094	5	4954										
ALDH9A1	0	genome.wustl.edu	37	chr1	165667703	165667703	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	taattgagcggctgcgacacGacgaaggtgccagtgctcat	13	10	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	165667703	165667703	G	A	SNP	ALDH9A1	ENST00000354775	human	ensembl	69_37n	-1	known	silent	c.93	p.V31	0.369	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149	11	0	0	31	8	20.51	-	-	-	A	165667703	G	A	165667703	2	1	71	1	0	0	0	0	0	0	0	1	506	1045	37	1		1	ALDH9A1	1	165667703	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	4697176	165667703	83582918	6	4955										
PLXNA2	0	genome.wustl.edu	37	chr1	208255805	208255805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gaaattgccgttccacaccaCagcgaaatccacggccagat	8	14	0	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	208255805	208255805	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.2347	p.V783M	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	89	0	0	53	9	14.52	-	-	-	T	208255805	C	T	208255805	3	4	71	1	0	0	0	0	1	0	0	0	12194	478	17	4	3425	4	PLXNA2	1	208255805	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	42588102	208255805	40994816	7	4956										
ITPKB	0	genome.wustl.edu	37	chr1	226836376	226836376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gggagagctgtgtctacctgCgtgtcctgccagctggatcc	14	12	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	226836376	226836376	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.2029	p.A677T	1.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	166	0	0	65	8	10.96	-	-	-	T	226836376	C	T	226836376	3	4	71	1	0	0	0	0	1	0	0	0	7972	768	27	1	835	1	ITPKB	1	226836376	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	18580571	226836376	22414245	8	4957										
CAD	0	genome.wustl.edu	37	chr2	27465222	27465222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	caatgctggggatggggtcgGagagcaccccacccaggccc	15	14	0	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	27465222	27465222	G	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.6149	p.G2050E	1.000	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,tigrfam_Asp_carbamoyltransf_euk	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	42	0	0	31	7	18.42	-	-	-	A	27465222	G	A	27465222	3	1	71	1	0	0	0	0	1	0	0	0	2590	1174	41	2	6307	2	CAD	2	27465222	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09		27465222	215734151	9	4958										
CDKL4	0	genome.wustl.edu	37	chr2	39417556	39417556	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	caatagcccatatatcgactGaagaaccatactgagtatct	6	10	1	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	39417556	39417556	G	A	SNP	CDKL4	ENST00000378803	human	ensembl	69_37n	-1	known	missense	c.542	p.S181L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	123	0	0	14	6	30	-	-	-	A	39417556	G	A	39417556	3	1	71	1	0	0	0	0	1	0	0	0	3185	1294	45	2	421	2	CDKL4	2	39417556	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	11952334	39417556	203781817	10	4959										
ANKRD53	0	genome.wustl.edu	37	chr2	71211878	71211878	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	accccagagcaacgggaatcGcagcgttccaggagcttcca	11	14	0	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	71211878	71211878	G	A	SNP	ANKRD53	ENST00000360589	human	ensembl	69_37n	1	putative	silent	c.1041	p.S347	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD53	HGNC	ENSG00000144031	45	0	0	44	7	13.73	-	-	-	A	71211878	G	A	71211878	2	1	71	1	0	0	0	0	0	0	0	1	678	1074	38	1		1	ANKRD53	2	71211878	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	31794322	71211878	171987495	11	4960										
UBA6	0	genome.wustl.edu	37	chr4	68529634	68529634	+	Frame_Shift_Del	DEL	T	T	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	taaaatccacaataaggcacTttggatgttttaactgcctc							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	4	68529634	68529634	T	-	DEL	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	frame_shift_del	c.929	p.K310fs	0.998	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	212	0	0	5	2	28.57	-	-	-	-	68529634	T	-	68529634	7	5	71	1	0	1	0	1	0	0	0	0	16929	1609	56	0	2321	0	UBA6	4	68529634	Frame_Shift_Del	DEL	T	TCGA-A2-A0YD-01A-11D-A10G-09		68529634	122624642	12	4961										
DSPP	0	genome.wustl.edu	37	chr4	88537234	88537234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gatagcagtgacagcagcaaCagcagtgacagcagtgacag	13	9	0	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	4	88537234	88537234	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3420	p.N1140	0.263	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	178	0	0	74	9	10.84	-	-	-	T	88537234	C	T	88537234	2	4	71	1	0	0	0	0	0	0	0	1	4817	477	17	4		4	DSPP	4	88537234	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	20007600	88537234	102617042	13	4962										
MAP3K1	0	genome.wustl.edu	37	chr5	56178672	56178673	+	Frame_Shift_Ins	INS	-	-	A													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aggttgaaaatggagaagatINSatcatcattattcaacagga							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	56178672	56178673	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3645_3646	p.I1215fs	0.977:0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	82	0	0	12	6	33.33	-	-	-	A	56178673	-	A	56178672	7	5	71	1	0	1	1	0	0	0	0	0	9314	1403	49	0	3699	0	MAP3K1	5	56178672	Frame_Shift_Ins	INS	-	TCGA-A2-A0YD-01A-11D-A10G-09		56178672	124736588	14	4963										
CYFIP2	0	genome.wustl.edu	37	chr5	156817668	156817671	+	Frame_Shift_Del	DEL	AAGA	AAGA	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	acgggaaggatgaaatcattAagaatgtggtgagcaggctg							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	156817668	156817671	AAGA	-	DEL	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	frame_shift_del	c.3661_3664	p.K1221fs	1.000:1.000:1.000:1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	111	0	0	63	11	14.67	-	-	-	-	156817671	AAGA	-	156817668	7	5	71	1	0	1	0	1	0	0	0	0	4169	363	13	0	3700	0	CYFIP2	5	156817668	Frame_Shift_Del	DEL	AAGA	TCGA-A2-A0YD-01A-11D-A10G-09	100638996	156817668	24097592	15	4964										
SAMD3	0	genome.wustl.edu	37	chr6	130497064	130497064	+	Frame_Shift_Del	DEL	T	T	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tggcctcttcggtgtccaaaTttacacttatttctaatcac							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	6	130497064	130497064	T	-	DEL	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	frame_shift_del	c.744	p.K248fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	263	0	0	9	2	18.18	-	-	-	-	130497064	T	-	130497064	7	5	71	1	0	1	0	1	0	0	0	0	13906	1490	52	0	838	0	SAMD3	6	130497064	Frame_Shift_Del	DEL	T	TCGA-A2-A0YD-01A-11D-A10G-09		130497064	40618003	16	4965										
CALN1	0	genome.wustl.edu	37	chr7	71868340	71868340	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ggcttcccctctccgggttgCtctggcagccgcatcggggg	15	15	2	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	7	71868340	71868340	C	T	SNP	CALN1	ENST00000395275	human	ensembl	69_37n	-1	known	silent	c.15	p.E5	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALN1	HGNC	ENSG00000183166	42	0	0	7	4	36.36	-	-	-	T	71868340	C	T	71868340	2	4	71	1	0	0	0	0	0	0	0	1	2616	796	28	4		4	CALN1	7	71868340	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		71868340	87270323	17	4966										
DENND4C	0	genome.wustl.edu	37	chr9	19361904	19361904	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	atattcagctgttatgggatAatatcaaccttcatcaggaa							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	19361904	19361904	A	-	DEL	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	frame_shift_del	c.4612	p.N1538fs	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	182	0	0	7	2	22.22	-	-	-	-	19361904	A	-	19361904	7	5	71	1	0	1	0	1	0	0	0	0	4471	362	13	0	4710	0	DENND4C	9	19361904	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09		19361904	121851527	18	4967										
RORB	0	genome.wustl.edu	37	chr9	77300402	77300402	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	atagccaagataccaaccatCacggcagtttgcaacttgca	7	12	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	77300402	77300402	C	T	SNP	RORB	ENST00000396204	human	ensembl	69_37n	1	known	silent	c.1281	p.I427	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963	116	0	0	27	4	12.9	-	-	-	T	77300402	C	T	77300402	2	4	71	1	0	0	0	0	0	0	0	1	13615	816	29	2		2	RORB	9	77300402	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	57938498	77300402	63913029	19	4968										
DBC1	0	genome.wustl.edu	37	chr9	121929944	121929944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	cagccctccgaatggctcccGctaaaggggttgacatagac	11	13	0	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	121929944	121929944	G	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1704	p.S568	0.822	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	39	0	0	18	4	18.18	-	-	-	A	121929944	G	A	121929944	2	1	71	1	0	0	0	0	0	0	0	1	4279	1078	38	1		1	DBC1	9	121929944	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	44629542	121929944	19283487	20	4969										
NUP214	0	genome.wustl.edu	37	chr9	134015982	134015982	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ccagttctcatgttactttcAacagatggtgtgctttgtcc							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	134015982	134015982	A	-	DEL	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	frame_shift_del	c.1179	p.T394fs	0.998	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	277	0	0	12	2	14.29	-	-	-	-	134015982	A	-	134015982	7	5	71	1	0	1	0	1	0	0	0	0	10835	117	5	0	1221	0	NUP214	9	134015982	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09	12086038	134015982	7197449	21	4970										
TMEM141	0	genome.wustl.edu	37	chr9	139686770	139686770	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aaatgcaacaacctctggctCttcctggagaccgggcagct	10	13	2	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139686770	139686770	C	G	SNP	TMEM141	ENST00000290079	human	ensembl	69_37n	1	known	silent	c.273	p.L91	1.000	NULL	NULL	-	no_errors	TMEM141	HGNC	ENSG00000244187	84	0	0	37	8	17.78	-	-	-	G	139686770	C	G	139686770	2	3	71	1	0	0	0	0	0	0	0	1	16151	900	32	2		2	TMEM141	9	139686770	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	5670788	139686770	1526661	22	4971										
KIAA1984	0	genome.wustl.edu	37	chr9	139699835	139699835	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gaaaagagacctccacagcaGaaatggaataccagtcgggc	11	10	0	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139699835	139699835	G	A	SNP	KIAA1984	ENST00000338005	human	ensembl	69_37n	1	known	missense	c.874	p.E292K	0.010	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	83	0	0	57	15	20.83	-	-	-	A	139699835	G	A	139699835	3	1	71	1	0	0	0	0	1	0	0	0	8318	943	33	2	908	2	KIAA1984	9	139699835	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	13065	139699835	1513596	23	4972										
KIAA1984	0	genome.wustl.edu	37	chr9	139700996	139700996	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aaatgacagacatgctaaaaGaggaagaagagaggctccag	12	6	0	5			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139700996	139700996	G	C	SNP	KIAA1984	ENST00000338005	human	ensembl	69_37n	1	known	missense	c.1150	p.E384Q	0.850	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	41	0	0	29	10	25.64	-	-	-	C	139700996	G	C	139700996	3	2	71	1	0	0	0	0	1	0	0	0	8318	943	33	2	1192	2	KIAA1984	9	139700996	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	1161	139700996	1512435	24	4973										
MINPP1	0	genome.wustl.edu	37	chr10	89311854	89311854	+	Frame_Shift_Del	DEL	T	T	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tgaaggtctcagccaatttcTtctccagtcatcctccagtt							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	89311854	89311854	T	-	DEL	MINPP1	ENST00000371996	human	ensembl	69_37n	1	known	frame_shift_del	c.1083	p.S362fs	0.991	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789	148	0	0	11	2	15.38	-	-	-	-	89311854	T	-	89311854	7	5	71	1	0	1	0	1	0	0	0	0	9659	1609	56	0	1139	0	MINPP1	10	89311854	Frame_Shift_Del	DEL	T	TCGA-A2-A0YD-01A-11D-A10G-09		89311854	46222893	25	4974										
NOLC1	0	genome.wustl.edu	37	chr10	103920079	103920079	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ctccagcaaagaaagcagcaGagagctcttcagacagctca	9	12	3	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	103920079	103920079	G	C	SNP	NOLC1	ENST00000405356	human	ensembl	69_37n	1	known	missense	c.1108	p.E370Q	0.995	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197	95	0	0	14	4	22.22	-	-	-	C	103920079	G	C	103920079	3	2	71	1	0	0	0	0	1	0	0	0	10601	943	33	2	1112	2	NOLC1	10	103920079	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	14608225	103920079	31614668	26	4975										
PTDSS2	0	genome.wustl.edu	37	chr11	489482	489482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	agccggcctccagcctgcgtCgctggctggccgtgtgcggc	16	16	0	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	489482	489482	C	T	SNP	PTDSS2	ENST00000308020	human	ensembl	69_37n	1	known	missense	c.937	p.R313C	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915	38	0	0	35	10	22.22	-	-	-	T	489482	C	T	489482	3	4	71	1	0	0	0	0	1	0	0	0	12817	884	31	1	971	1	PTDSS2	11	489482	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		489482	134517034	27	4976										
MUC5B	0	genome.wustl.edu	37	chr11	1254322	1254322	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	cagcccacttgccgcggcctGagtgaggccgacgtcacctg	13	16	1	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	1254322	1254322	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.2154	p.L718	0.979	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	33	0	0	33	18	35.29	-	-	-	A	1254322	G	A	1254322	2	1	71	1	0	0	0	0	0	0	0	1	10051	1277	45	2		2	MUC5B	11	1254322	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	764840	1254322	133752194	28	4977										
OR52N5	0	genome.wustl.edu	37	chr11	5799613	5799613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	agtgcattgggtagagtggtGgtgcaggtaaggaggtcaat	18	3	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	5799613	5799613	G	A	SNP	OR52N5	ENST00000317093	human	ensembl	69_37n	-1	known	silent	c.252	p.T84	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009	72	0	0	8	7	46.67	-	-	-	A	5799613	G	A	5799613	2	1	71	1	0	0	0	0	0	0	0	1	11203	1335	47	4		4	OR52N5	11	5799613	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	4545291	5799613	129206903	29	4978										
SPTY2D1	0	genome.wustl.edu	37	chr11	18636609	18636609	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gatcgctcaggtcctgagctGgagctgccattctggcgcct	13	13	2	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	18636609	18636609	G	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	silent	c.1212	p.S404	0.681	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	27	0	0	19	5	20.83	-	-	-	A	18636609	G	A	18636609	2	1	71	1	0	0	0	0	0	0	0	1	15217	1335	47	4		4	SPTY2D1	11	18636609	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	12836996	18636609	116369907	30	4979										
NAV2	0	genome.wustl.edu	37	chr11	19967967	19967967	+	Frame_Shift_Del	DEL	C	C	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gggaagatcctgaggctcggCggctgcggacagtgaagaac							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	19967967	19967967	C	-	DEL	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	frame_shift_del	c.2236	p.R746fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	97	0	0	16	2	11.11	-	-	-	-	19967967	C	-	19967967	7	5	71	1	0	1	0	1	0	0	0	0	10256	759	27	0	2280	0	NAV2	11	19967967	Frame_Shift_Del	DEL	C	TCGA-A2-A0YD-01A-11D-A10G-09	1331358	19967967	115038549	31	4980										
CD5	0	genome.wustl.edu	37	chr11	60885726	60885726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ctcaaggacggatggcacatGgtttgcagccagagctgggg	16	9	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	60885726	60885726	G	A	SNP	CD5	ENST00000347785	human	ensembl	69_37n	1	known	missense	c.174	p.M58I	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	127	0	0	44	8	15.38	-	-	-	A	60885726	G	A	60885726	3	1	71	1	0	0	0	0	1	0	0	0	3050	1348	47	4	184	4	CD5	11	60885726	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	40917759	60885726	74120790	32	4981										
TAS2R30	0	genome.wustl.edu	37	chr12	11286524	11286524	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	agaaattggcaatcctgagcAaataaaacatgctgaggcta							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	11286524	11286524	A	-	DEL	TAS2R30	ENST00000539585	human	ensembl	69_37n	-1	known	frame_shift_del	c.320	p.L107fs	0.622	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R30	HGNC	ENSG00000256188	142	0	0	7	2	22.22	-	-	-	-	11286524	A	-	11286524	7	5	71	1	0	1	0	1	0	0	0	0	15665	131	5	0	643	0	TAS2R30	12	11286524	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09		11286524	122565371	33	4982										
STAC3	0	genome.wustl.edu	37	chr12	57638000	57638000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aaaaatccgaccttctccccGattttcccctagggaagata	6	13	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	57638000	57638000	G	A	SNP	STAC3	ENST00000557176	human	ensembl	69_37n	-1	known	missense	c.242	p.S81L	0.715	NULL	NULL	-	no_errors	STAC3	HGNC	ENSG00000185482	120	1	0.83	44	15	25.42	-	-	-	A	57638000	G	A	57638000	3	1	71	1	0	0	0	0	1	0	0	0	15332	1048	37	1	235	1	STAC3	12	57638000	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	46351476	57638000	76213895	34	4983										
RIMBP2	0	genome.wustl.edu	37	chr12	130892283	130892283	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gctggtacctcgacatcgacGttgggcgagctttctctggg	14	11	1	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	130892283	130892283	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.2913	p.N971	0.999	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	125	0	0	53	11	17.19	-	-	-	A	130892283	G	A	130892283	2	1	71	1	0	0	0	0	0	0	0	1	13447	1136	40	1		1	RIMBP2	12	130892283	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	73254283	130892283	2959612	35	4984										
ZDHHC20	0	genome.wustl.edu	37	chr13	21955625	21955625	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tccagccactgagattcactGtccaacaagcggttttttga	8	11	1	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	21955625	21955625	G	A	SNP	ZDHHC20	ENST00000400590	human	ensembl	69_37n	-1	known	silent	c.1008	p.D336	0.996	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776	273	0	0	34	8	19.05	-	-	-	A	21955625	G	A	21955625	2	1	71	1	0	0	0	0	0	0	0	1	17707	1368	48	4		4	ZDHHC20	13	21955625	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09		21955625	93214253	36	4985										
ERCC5	0	genome.wustl.edu	37	chr13	103514694	103514694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	agagagctcttgacgatgacGaagatgtaaaagtgtgtgct	13	5	1	4			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	103514694	103514694	G	A	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	missense	c.1195	p.E399K	0.940	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	76	0	0	16	10	38.46	-	-	-	A	103514694	G	A	103514694	3	1	71	1	0	0	0	0	1	0	0	0	5253	1059	37	1	1225	1	ERCC5	13	103514694	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	81559069	103514694	11655184	37	4986										
CTSG	0	genome.wustl.edu	37	chr14	25044494	25044494	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ccccagcaatgagctgctgtCagcacaaagtcttctcgcac	8	15	3	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	25044494	25044494	C	T	SNP	CTSG	ENST00000216336	human	ensembl	69_37n	-1	known	silent	c.180	p.L60	0.993	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448	125	0	0	68	17	20	-	-	-	T	25044494	C	T	25044494	2	4	71	1	0	0	0	0	0	0	0	1	4067	813	29	2		2	CTSG	14	25044494	Silent	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		25044494	82305046	38	4987										
ACTN1	0	genome.wustl.edu	37	chr14	69387787	69387787	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aaatccagggccttgttgacGttggagatcttgtgcactct	11	9	2	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	69387787	69387787	G	A	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	silent	c.276	p.N92	0.785	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	200	1	0.5	41	32	43.84	-	-	-	A	69387787	G	A	69387787	2	1	71	1	0	0	0	0	0	0	0	1	204	1136	40	1		1	ACTN1	14	69387787	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	44343293	69387787	37961753	39	4988										
CATSPER2	0	genome.wustl.edu	37	chr15	43925010	43925010	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ggtactctctcttttttgacAaggtctcttctgtttttgat							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	43925010	43925010	A	-	DEL	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	frame_shift_del	c.1301	p.L434fs	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	213	0	0	10	2	16.67	-	-	-	-	43925010	A	-	43925010	7	5	71	1	0	1	0	1	0	0	0	0	2713	131	5	0	303	0	CATSPER2	15	43925010	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09		43925010	58606382	40	4989										
GLCE	0	genome.wustl.edu	37	chr15	69561032	69561032	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gtaagttaggggaagggttcAagtctttagagccaggatgg							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	69561032	69561032	A	-	DEL	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	frame_shift_del	c.1303	p.K435fs	0.999	pfam_C5-epim	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	67	0	0	17	2	10.53	-	-	-	-	69561032	A	-	69561032	7	5	71	1	0	1	0	1	0	0	0	0	6484	131	5	0	1313	0	GLCE	15	69561032	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09	25636022	69561032	32970360	41	4990										
AKAP13	0	genome.wustl.edu	37	chr15	86198828	86198828	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	acagccatgggatgggagctGagggtcgagaaagtgagagt	18	5	0	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	86198828	86198828	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.4555	p.E1519K	0.987	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	167	0	0	55	23	29.49	-	-	-	A	86198828	G	A	86198828	3	1	71	1	0	0	0	0	1	0	0	0	449	1291	45	2	4593	2	AKAP13	15	86198828	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	16637796	86198828	16332564	42	4991										
PKD1	0	genome.wustl.edu	37	chr16	2159446	2159446	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gccggcagccagcaggatctGaaaatggaccagctgcccgg	14	13	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	2159446	2159446	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	nonsense	c.5722	p.Q1908*	0.002	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	13	0	0	16	4	20	-	-	-	A	2159446	G	A	2159446	4	1	71	1	0	0	0	0	0	1	0	0	12037	1299	45	2	7317	2	PKD1	16	2159446	Nonsense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09		2159446	88195307	43	4992										
PPP4C	0	genome.wustl.edu	37	chr16	30094768	30094768	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ggcaaccatgagagtcgccaGatcacgcaggtctatggctt	12	11	2	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	30094768	30094768	G	C	SNP	PPP4C	ENST00000279387	human	ensembl	69_37n	1	known	missense	c.357	p.Q119H	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923	58	0	0	64	34	34.69	-	-	-	C	30094768	G	C	30094768	3	2	71	1	0	0	0	0	1	0	0	0	12479	933	33	2	375	2	PPP4C	16	30094768	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	27935322	30094768	60259985	44	4993										
ABCC11	0	genome.wustl.edu	37	chr16	48209200	48209200	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tgagagcagcactggatcttGagggatcactgagagcttgg	15	7	2	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	48209200	48209200	G	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.3667	p.Q1223E	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	47	0	0	29	12	29.27	-	-	-	C	48209200	G	C	48209200	3	2	71	1	0	0	0	0	1	0	0	0	51	1299	45	2	501	2	ABCC11	16	48209200	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	18114432	48209200	42145553	45	4994										
CDH1	0	genome.wustl.edu	37	chr16	68846043	68846043	+	Frame_Shift_Del	DEL	C	C	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tcgatctctctgcagagtttCcctacgtataccctggtggt							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	68846043	68846043	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.1014	p.P339fs	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	243	0	0	28	16	35.56	-	-	-	-	68846043	C	-	68846043	7	5	71	1	0	1	0	1	0	0	0	0	3124	854	30	0	1044	0	CDH1	16	68846043	Frame_Shift_Del	DEL	C	TCGA-A2-A0YD-01A-11D-A10G-09	20636843	68846043	21508710	46	4995										
HYDIN	0	genome.wustl.edu	37	chr16	70891628	70891628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	caatgaggagagagctgaagTtgaggtgtgacttgttcaga	15	4	1	6			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	70891628	70891628	T	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.12272	p.N4091S	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	502	1	0.2	91	11	10.78	-	-	-	C	70891628	T	C	70891628	3	2	71	1	0	0	0	0	1	0	0	0	7521	1725	60	5	3150	5	HYDIN	16	70891628	Missense_Mutation	SNP	T	TCGA-A2-A0YD-01A-11D-A10G-09	2045585	70891628	19463125	47	4996										
TRAPPC2L	0	genome.wustl.edu	37	chr16	88926159	88926159	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gagacaacgaaattcgcagcGtaagtcagggagttagaggg	15	6	1	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	88926159	88926159	G	A	SNP	TRAPPC2L	ENST00000301021	human	ensembl	69_37n	1	known	splice_site	c.294+1	e3+1	1.000	-	-	-	no_errors	TRAPPC2L	HGNC	ENSG00000167515	165	0	0	25	6	19.35	-	-	-	A	88926159	G	A	88926159	5	1	71	1	0	0	0	0	0	0	1	0	16555	1159	40	1	305	1	TRAPPC2L	16	88926159	Splice_Site	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	18034531	88926159	1428594	48	4997										
MYH1	0	genome.wustl.edu	37	chr17	10408307	10408307	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aggaggggtttgatcttgaaAtacagcttcatccagggcca	12	8	2	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	10408307	10408307	A	G	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.2511	p.Y837	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	331	0	0	18	7	28	-	-	-	G	10408307	A	G	10408307	2	3	71	1	0	0	0	0	0	0	0	1	10101	108	4	5		5	MYH1	17	10408307	Silent	SNP	A	TCGA-A2-A0YD-01A-11D-A10G-09		10408307	70786903	49	4998										
TMEM104	0	genome.wustl.edu	37	chr17	72786402	72786402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ttctcatccgggacaactacGagcgggcagagaagcggccc	13	13	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	72786402	72786402	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	missense	c.313	p.E105K	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	74	0	0	46	6	11.54	-	-	-	A	72786402	G	A	72786402	3	1	71	1	0	0	0	0	1	0	0	0	16113	1059	37	1	327	1	TMEM104	17	72786402	Missense_Mutation	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	62378095	72786402	8408808	50	4999										
NPC1	0	genome.wustl.edu	37	chr18	21114508	21114508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tatgtggctgcagaactccaCggagatgccacagctctgaa	11	11	1	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	18	21114508	21114508	C	T	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.3493	p.V1165M	1.000	pfam_Patched,tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	55	0	0	49	19	27.94	-	-	-	T	21114508	C	T	21114508	3	4	71	1	0	0	0	0	1	0	0	0	10642	536	19	1	355	1	NPC1	18	21114508	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		21114508	56962740	51	5000										
OR7A5	0	genome.wustl.edu	37	chr19	14938475	14938475	+	Frame_Shift_Del	DEL	A	A	-													0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tatatcaccatgtgattaagAaagctatcagaacaagcaag							TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	19	14938475	14938475	A	-	DEL	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	frame_shift_del	c.579	p.N195fs	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	81	0	0	11	2	15.38	-	-	-	-	14938475	A	-	14938475	7	5	71	1	0	1	0	1	0	0	0	0	11289	243	9	0	384	0	OR7A5	19	14938475	Frame_Shift_Del	DEL	A	TCGA-A2-A0YD-01A-11D-A10G-09		14938475	44190508	52	5001										
UBOX5	0	genome.wustl.edu	37	chr20	3096074	3096074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ggtggatgccaaggcaatttCcaagctttgtgacagcttct	11	9	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	3096074	3096074	C	T	SNP	UBOX5	ENST00000217173	human	ensembl	69_37n	-1	known	missense	c.1294	p.E432K	1.000	NULL	pfam_Ubox_domain,smart_Ubox_domain,pfscan_Znf_RING	-	no_errors	UBOX5	HGNC	ENSG00000185019	52	0	0	49	11	18.33	-	-	-	T	3096074	C	T	3096074	3	4	71	1	0	0	0	0	1	0	0	0	16991	864	30	2	339	2	UBOX5	20	3096074	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		3096074	59929446	53	5002										
CTNNBL1	0	genome.wustl.edu	37	chr20	36361374	36361374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ctcgagaacgcggccgctatCgggaagaagaaatgactgtg	14	9	0	4			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	36361374	36361374	C	T	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	missense	c.43	p.R15W	0.840	NULL	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	111	0	0	46	11	19.3	-	-	-	T	36361374	C	T	36361374	3	4	71	1	0	0	0	0	1	0	0	0	4050	875	31	1	130	1	CTNNBL1	20	36361374	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	33265300	36361374	26664146	54	5003										
ZNFX1	0	genome.wustl.edu	37	chr20	47882678	47882678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	cctataagtattaccttccaGaaactggtccaaagcatgat	6	10	0	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	47882678	47882678	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.1996	p.L666	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	136	0	0	7	4	36.36	-	-	-	A	47882678	G	A	47882678	2	1	71	1	0	0	0	0	0	0	0	1	18298	933	33	2		2	ZNFX1	20	47882678	Silent	SNP	G	TCGA-A2-A0YD-01A-11D-A10G-09	11521304	47882678	15142842	55	5004										
TRMT2A	0	genome.wustl.edu	37	chr22	20102144	20102144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gaaggtcagccctagcaggtCctcgtggatgcaccggtccc	13	14	1	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	22	20102144	20102144	C	T	SNP	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396N	1.000	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	79	0	0	34	19	35.85	-	-	-	T	20102144	C	T	20102144	3	4	71	1	0	0	0	0	1	0	0	0	16661	855	30	2	715	2	TRMT2A	22	20102144	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		20102144	31202422	56	5005										
MXRA5	0	genome.wustl.edu	37	chrX	3242309	3242309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	aatcattacccagcttctgcCccgagcctgccttgtatctt	6	15	3	0			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	3242309	3242309	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.1417	p.G473S	0.049	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	75	0	0	29	6	17.14	-	-	-	T	3242309	C	T	3242309	3	4	71	1	0	0	0	0	1	0	0	0	10075	623	22	4	7081	4	MXRA5	23	3242309	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09		3242309	152028251	57	5006										
FAM120C	0	genome.wustl.edu	37	chrX	54143207	54143207	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	ccctttataggcagaccactCtttaaggatcactgaaggaa	8	10	2	2			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	54143207	54143207	C	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2083	p.E695Q	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	115	0	0	14	6	30	-	-	-	G	54143207	C	G	54143207	3	3	71	1	0	0	0	0	1	0	0	0	5458	922	32	2	1235	2	FAM120C	23	54143207	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	50900898	54143207	101127353	58	5007										
GRIA3	0	genome.wustl.edu	37	chrX	122551281	122551281	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	tatagctgttgctccactcaCtataacattggtccgtgaag	8	10	1	1			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	122551281	122551281	C	G	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.1529	p.T510S	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	171	0	0	33	8	19.51	-	-	-	G	122551281	C	G	122551281	3	3	71	1	0	0	0	0	1	0	0	0	6820	565	20	4	1571	4	GRIA3	23	122551281	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	68408074	122551281	32719279	59	5008										
MAGEC3	0	genome.wustl.edu	37	chrX	140969318	140969318	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283333333333333	17	0.000152467729823292	3.08139534883721	6.9281045751634	2.06314878892734	1	1	11	gagatgcagatgaatgtcatCaacacatacacgggctactt	9	9	2	3			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	140969318	140969318	C	G	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.645	p.I215M	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	188	0	0	22	6	21.43	-	-	-	G	140969318	C	G	140969318	3	3	71	1	0	0	0	0	1	0	0	0	9253	816	29	2	659	2	MAGEC3	23	140969318	Missense_Mutation	SNP	C	TCGA-A2-A0YD-01A-11D-A10G-09	18418037	140969318	14301242	60	5009										
CASZ1	0	genome.wustl.edu	37	chr1	10705025	10705025	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gtatttgaagccattggctgCccgccgctccgccttctcat	9	15	1	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	1	10705025	10705025	C	G	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.3817	p.A1273P	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	108	1	0.92	85	22	20.56	-	-	-	G	10705025	C	G	10705025	3	3	72	1	0	0	0	0	1	0	0	0	2710	739	26	4	1478	4	CASZ1	1	10705025	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		10705025	238545596	1	5010										
AKIRIN1	0	genome.wustl.edu	37	chr1	39463917	39463917	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	atttagaagttgttcttaatCagagtgaagcttgtgcttcg	10	5	2	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	1	39463917	39463917	C	T	SNP	AKIRIN1	ENST00000432648	human	ensembl	69_37n	1	known	nonsense	c.295	p.Q99*	1.000	NULL	NULL	-	no_errors	AKIRIN1	HGNC	ENSG00000174574	152	0	0	181	81	30.92	-	-	-	T	39463917	C	T	39463917	4	4	72	1	0	0	0	0	0	1	0	0	461	827	29	2	301	2	AKIRIN1	1	39463917	Nonsense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	28758892	39463917	209786704	2	5011										
VPRBP	0	genome.wustl.edu	37	chr3	51457513	51457513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ctgccgcaacactctgatttTcctgccattgcagggtgatg	10	12	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	3	51457513	51457513	T	C	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.1564	p.K522E	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	238	1	0.42	262	54	17.03	-	-	-	C	51457513	T	C	51457513	3	2	72	1	0	0	0	0	1	0	0	0	17282	1792	62	5	1656	5	VPRBP	3	51457513	Missense_Mutation	SNP	T	TCGA-A2-A0YE-01A-11D-A10G-09		51457513	146564917	3	5012										
BAP1	0	genome.wustl.edu	37	chr3	52442611	52442611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	atttgaacaggaagataaatCcatatacagggctgggggaa	12	5	0	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	3	52442611	52442611	C	T	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.134	p.G45E	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	61	0	0	38	67	63.81	-	-	-	T	52442611	C	T	52442611	3	4	72	1	0	0	0	0	1	0	0	0	1315	855	30	2	2111	2	BAP1	3	52442611	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	985098	52442611	145579819	4	5013										
C3orf37	0	genome.wustl.edu	37	chr3	129009605	129009605	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tgtcagggaacaaaccagagGcagccatacttcatctattt	8	10	3	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	3	129009605	129009605	G	C	SNP	C3orf37	ENST00000383463	human	ensembl	69_37n	1	known	missense	c.411	p.R137S	0.940	pfam_DUF159	pfam_DUF159	-	no_errors	C3orf37	HGNC	ENSG00000183624	202	2	0.98	206	35	14.34	-	-	-	C	129009605	G	C	129009605	3	2	72	1	0	0	0	0	1	0	0	0	2247	1194	42	4	421	4	C3orf37	3	129009605	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	76566994	129009605	69012825	5	5014										
GOLIM4	0	genome.wustl.edu	37	chr3	167747569	167747569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	taaggaaggggaaggctaccGgagctgctcctggtgctgcg	17	9	0	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	3	167747569	167747569	G	A	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.1432	p.R478W	0.218	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	60	0	0	40	32	43.84	-	-	-	A	167747569	G	A	167747569	3	1	72	1	0	0	0	0	1	0	0	0	6615	1130	39	1	686	1	GOLIM4	3	167747569	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	38737964	167747569	30274861	6	5015										
CRIPAK	0	genome.wustl.edu	37	chr4	1388650	1388650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ccatgtggagtgcccgcctgCtcacacgtgccgatgcggag	14	14	1	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	4	1388650	1388650	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	silent	c.351	p.C117	0.000	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	154	0	0	69	24	25.81	-	-	-	T	1388650	C	T	1388650	2	4	72	1	0	0	0	0	0	0	0	1	3907	805	28	4		4	CRIPAK	4	1388650	Silent	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		1388650	189765626	7	5016										
SHROOM3	0	genome.wustl.edu	37	chr4	77675780	77675780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gacagcctctcccgccctacAcccctgccatgatgcacaga	7	19	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	4	77675780	77675780	A	C	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.4144	p.T1382P	0.018	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	56	0	0	31	16	34.04	-	-	-	C	77675780	A	C	77675780	3	2	72	1	0	0	0	0	1	0	0	0	14384	159	6	5	4170	5	SHROOM3	4	77675780	Missense_Mutation	SNP	A	TCGA-A2-A0YE-01A-11D-A10G-09	76287130	77675780	113478496	8	5017										
PLAC8	0	genome.wustl.edu	37	chr4	84026091	84026091	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tagagagtcctcattgcgacGcttgttccacacagacagca	9	12	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	4	84026091	84026091	G	A	SNP	PLAC8	ENST00000311507	human	ensembl	69_37n	-1	known	silent	c.201	p.S67	0.021	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8	HGNC	ENSG00000145287	138	0	0	61	112	64.37	-	-	-	A	84026091	G	A	84026091	2	1	72	1	0	0	0	0	0	0	0	1	12089	1078	38	1		1	PLAC8	4	84026091	Silent	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	6350311	84026091	107128185	9	5018										
TRPC7	0	genome.wustl.edu	37	chr5	135692614	135692614	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aagcgcgtgccgtcctcgtcGtaggcatagaagtcgtcgtc	13	12	0	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	5	135692614	135692614	G	A	SNP	TRPC7	ENST00000503275	human	ensembl	69_37n	-1	known	nonsense	c.460	p.R154*	0.908	superfamily_Ankyrin_rpt-contain_dom	pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC7_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPC7	HGNC	ENSG00000069018	108	0	0	89	10	10.1	-	-	-	A	135692614	G	A	135692614	4	1	72	1	0	0	0	0	0	1	0	0	16680	1140	40	1	2170	1	TRPC7	5	135692614	Nonsense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		135692614	45222646	10	5019										
ADAMTS2	0	genome.wustl.edu	37	chr5	178548677	178548677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gttacttgacgagatcttccGgatgggcgagtcggggtccg	16	9	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	5	178548677	178548677	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.3163	p.R1055W	0.028	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	132	0	0	97	13	11.82	-	-	-	A	178548677	G	A	178548677	3	1	72	1	0	0	0	0	1	0	0	0	265	1115	39	1	480	1	ADAMTS2	5	178548677	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	42856063	178548677	2366583	11	5020										
EPHA7	0	genome.wustl.edu	37	chr6	94120423	94120423	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tggaaagatagctaagttctCaataatggaccagcacttct	8	8	2	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	6	94120423	94120423	C	A	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	nonsense	c.628	p.E210*	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	149	1	0.67	219	36	14.12	-	-	-	A	94120423	C	A	94120423	4	1	72	1	0	0	0	0	0	1	0	0	5209	835	29	2	2428	2	EPHA7	6	94120423	Nonsense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		94120423	76994644	12	5021										
RSPH10B	0	genome.wustl.edu	37	chr7	5978378	5978378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gttcaaagttgctgtcaattCcatcatatatgaaacgatta	6	7	3	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	7	5978378	5978378	C	G	SNP	RSPH10B	ENST00000337579	human	ensembl	69_37n	-1	known	missense	c.1841	p.G614A	0.896	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B	HGNC	ENSG00000155026	17	0	0	14	54	79.41	-	-	-	G	5978378	C	G	5978378	3	3	72	1	0	0	0	0	1	0	0	0	13789	855	30	2	795	2	RSPH10B	7	5978378	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		5978378	153160285	13	5022										
EZH2	0	genome.wustl.edu	37	chr7	148506190	148506190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	caaaaaacagctcttcgccaGtctggatggctctcttggca	9	12	3	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	7	148506190	148506190	G	A	SNP	EZH2	ENST00000320356	human	ensembl	69_37n	-1	known	missense	c.2168	p.T723I	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462	164	0	0	160	151	48.55	-	-	-	A	148506190	G	A	148506190	3	1	72	1	0	0	0	0	1	0	0	0	5371	1029	36	4	95	4	EZH2	7	148506190	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	142527812	148506190	10632473	14	5023										
REPIN1	0	genome.wustl.edu	37	chr7	150066656	150066656	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tgtggggcttatggctggtgCgtgtggctttgtggggggag	22	4	0	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	7	150066656	150066656	C	G	SNP	REPIN1	ENST00000518462	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	REPIN1	HGNC	ENSG00000214022	23	0	0	7	15	68.18	-	-	-	G	150066656	C	G	150066656	1	3	72	0	1	0	0	0	0	0	0	0	13310	783	27	3		3	REPIN1	7	150066656	RNA	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	1560466	150066656	9072007	15	5024										
C8orf86	0	genome.wustl.edu	37	chr8	38385862	38385862	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gtgacgtgtagaagtggctgTgctcgtggcatcaggcaccc	15	10	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	8	38385862	38385862	T	G	SNP	C8orf86	ENST00000358138	human	ensembl	69_37n	-1	known	silent	c.294	p.A98	0.001	NULL	NULL	-	no_errors	C8orf86	HGNC	ENSG00000196166	173	0	0	162	39	19.12	-	-	-	G	38385862	T	G	38385862	2	3	72	1	0	0	0	0	0	0	0	1	2467	1683	59	5		5	C8orf86	8	38385862	Silent	SNP	T	TCGA-A2-A0YE-01A-11D-A10G-09		38385862	107978160	16	5025										
PLEKHA2	0	genome.wustl.edu	37	chr8	38827055	38827055	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ttggaggaaaagaaagccctCtgcaaagccccctctgtggc	11	12	2	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	8	38827055	38827055	C	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	silent	c.1032	p.L344	0.846	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	53	0	0	56	19	25.33	-	-	-	T	38827055	C	T	38827055	2	4	72	1	0	0	0	0	0	0	0	1	12130	900	32	2		2	PLEKHA2	8	38827055	Silent	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	441193	38827055	107536967	17	5026										
VPS28	0	genome.wustl.edu	37	chr8	145649456	145649456	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gtctggcggccctcaaagtcGggtgggaggtggctcatgcg	18	10	3	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	8	145649456	145649456	G	A	SNP	VPS28	ENST00000377348	human	ensembl	69_37n	-1	known	silent	c.516	p.P172	0.091	pfam_VPS28,pirsf_VPS28	pfam_VPS28,pirsf_VPS28	-	no_errors	VPS28	HGNC	ENSG00000160948	46	0	0	21	7	25	-	-	-	A	145649456	G	A	145649456	2	1	72	1	0	0	0	0	0	0	0	1	17296	1103	39	1		1	VPS28	8	145649456	Silent	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	106822401	145649456	714566	18	5027										
IL11RA	0	genome.wustl.edu	37	chr9	34661484	34661484	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tcctgcttcttctaggagctCcaaacctgtagaggacccag	9	13	2	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	9	34661484	34661484	C	A	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	missense	c.1258	p.P420T	0.995	NULL	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	186	0	0	81	123	60	-	-	-	A	34661484	C	A	34661484	3	1	72	1	0	0	0	0	1	0	0	0	7677	855	30	2	1308	2	IL11RA	9	34661484	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		34661484	106551947	19	5028										
RBM17	0	genome.wustl.edu	37	chr10	6150611	6150611	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tcgtttgggagtctggcatcGgaaacctcctttaatgcttg	11	9	1	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	10	6150611	6150611	G	T	SNP	RBM17	ENST00000481147	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RBM17	HGNC	ENSG00000134453	179	0	0	156	116	42.65	-	-	-	T	6150611	G	T	6150611	1	4	72	0	1	0	0	0	0	0	0	0	13202	1131	39	3		3	RBM17	10	6150611	RNA	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		6150611	129384136	20	5029										
C10orf2	0	genome.wustl.edu	37	chr10	102748742	102748742	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tgattagtcgtcgagatgctGaggtggtactgacgagtcgt	15	6	0	4			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	10	102748742	102748742	G	A	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.775	p.E259K	1.000	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	74	0	0	31	36	53.73	-	-	-	A	102748742	G	A	102748742	3	1	72	1	0	0	0	0	1	0	0	0	1607	1291	45	2	777	2	C10orf2	10	102748742	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	96598131	102748742	32786005	21	5030										
STX5	0	genome.wustl.edu	37	chr11	62574965	62574965	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gcaaggaagaccacaaagatGatgaagaagacaatgaggat	12	5	0	7			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	11	62574965	62574965	G	T	SNP	STX5	ENST00000294179	human	ensembl	69_37n	-1	known	silent	c.1044	p.I348	1.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX5	HGNC	ENSG00000162236	236	0	0	479	93	16.26	-	-	-	T	62574965	G	T	62574965	2	4	72	1	0	0	0	0	0	0	0	1	15439	1280	45	2		2	STX5	11	62574965	Silent	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		62574965	72431551	22	5031										
ARL2	0	genome.wustl.edu	37	chr11	64786087	64786087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gggtggccagaagtccctgcGgtcctactggcggaactact	14	12	0	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	11	64786087	64786087	G	T	SNP	ARL2	ENST00000246747	human	ensembl	69_37n	1	known	missense	c.221	p.R74L	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL2	HGNC	ENSG00000213465	74	0	0	84	17	16.67	-	-	-	T	64786087	G	T	64786087	3	4	72	1	0	0	0	0	1	0	0	0	937	1116	39	3	231	3	ARL2	11	64786087	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	2211122	64786087	70220429	23	5032										
EI24	0	genome.wustl.edu	37	chr11	125445240	125445240	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aaaagagagaggagcagcgtCgaagaagggcaagtagtgtc	16	5	0	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	11	125445240	125445240	C	T	SNP	EI24	ENST00000278903	human	ensembl	69_37n	1	known	nonsense	c.124	p.R42*	0.996	NULL	NULL	-	no_errors	EI24	HGNC	ENSG00000149547	125	0	0	86	248	74.03	-	-	-	T	125445240	C	T	125445240	4	4	72	1	0	0	0	0	0	1	0	0	5020	876	31	1	130	1	EI24	11	125445240	Nonsense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	60659153	125445240	9561276	24	5033										
MYF6	0	genome.wustl.edu	37	chr12	81102680	81102680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gatgcctttcttccatcgtgGacagtatttcctcggaggaa	10	10	1	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	12	81102680	81102680	G	T	SNP	MYF6	ENST00000228641	human	ensembl	69_37n	1	known	missense	c.670	p.D224Y	1.000	NULL	pfam_Basic,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF6	HGNC	ENSG00000111046	154	0	0	134	87	39.19	-	-	-	T	81102680	G	T	81102680	3	4	72	1	0	0	0	0	1	0	0	0	10100	1174	41	2	680	2	MYF6	12	81102680	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		81102680	52749215	25	5034										
RB1	0	genome.wustl.edu	37	chr13	48934162	48934162	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ttttttttcaggggaagtatTacaaatggaagatgatctgg	11	3	2	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	13	48934162	48934162	T	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.617	p.L206*	1.000	pfam_DUF3452_retinoblatoma-assoc	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	110	0	0	77	168	68.57	-	-	-	G	48934162	T	G	48934162	4	3	72	1	0	0	0	0	0	1	0	0	13181	1764	61	5	643	5	RB1	13	48934162	Nonsense_Mutation	SNP	T	TCGA-A2-A0YE-01A-11D-A10G-09		48934162	66235716	26	5035										
MDGA2	0	genome.wustl.edu	37	chr14	47504278	47504278	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aatccattgtattggctggtCtgacatctgtacattcctga	8	9	2	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	14	47504278	47504278	C	G	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.1755	p.Q585H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	135	0	0	90	50	35.46	-	-	-	G	47504278	C	G	47504278	3	3	72	1	0	0	0	0	1	0	0	0	9478	912	32	2	1362	2	MDGA2	14	47504278	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		47504278	59845262	27	5036										
NPC2	0	genome.wustl.edu	37	chr14	74946861	74946861	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	acagagcacctcctcttcaaCgaatcactggataccattgg	7	13	3	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	14	74946861	74946861	C	T	SNP	NPC2	ENST00000553490	human	ensembl	69_37n	-1	novel	silent	c.588	p.S196	0.000	NULL	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	-	no_stop_codon:bad_bp_length_for_coding_region	NPC2	HGNC	ENSG00000119655	41	0	0	65	16	19.75	-	-	-	T	74946861	C	T	74946861	2	4	72	1	0	0	0	0	0	0	0	1	10644	551	19	1		1	NPC2	14	74946861	Silent	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	27442583	74946861	32402679	28	5037										
KIF26A	0	genome.wustl.edu	37	chr14	104639413	104639413	+	Missense_Mutation	SNP	G	G	A													0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	caggctcatcgaggagcgcaGggagaggacgggcacccgct							TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	14	104639413	104639413	G	A	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	missense	c.1520	p.R507K	0.013	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	28	0	0	19	12	38.71	-	-	-	A	104639413	G	A	104639413	3	1	72	1	0	0	0	0	1	0	0	0	8346	1000	35	4	1550	4	KIF26A	14	104639413	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	29692552	104639413	2710127	29	5038	40	2								
KIF26A	0	genome.wustl.edu	37	chr14	104639414	104639414	+	Silent	SNP	G	G	A													0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aggctcatcgaggagcgcagGgagaggacgggcacccgctt							TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	14	104639414	104639414	G	A	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	silent	c.1521	p.R507	0.025	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	28	0	0	18	13	41.94	-	-	-	A	104639414	G	A	104639414	2	1	72	1	0	0	0	0	0	0	0	1	8346	1223	43	4		4	KIF26A	14	104639414	Silent	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	1	104639414	2710126	30	5039	40	2								
JAG2	0	genome.wustl.edu	37	chr14	105617992	105617992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aggtgggcccgctccagcccGatgggcagtggcattcgaag	16	12	0	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	14	105617992	105617992	G	A	SNP	JAG2	ENST00000331782	human	ensembl	69_37n	-1	known	missense	c.1124	p.S375L	0.991	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916	23	0	0	17	9	33.33	-	-	-	A	105617992	G	A	105617992	3	1	72	1	0	0	0	0	1	0	0	0	7989	1059	37	1	2668	1	JAG2	14	105617992	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	978578	105617992	1731548	31	5040										
MAPK6	0	genome.wustl.edu	37	chr15	52356350	52356350	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	caaatattgtgatctggagtGtagccatacttgtaactaca	8	7	1	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	15	52356350	52356350	G	T	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.1319	p.C440F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	113	1	0.88	96	30	23.81	-	-	-	T	52356350	G	T	52356350	3	4	72	1	0	0	0	0	1	0	0	0	9352	1377	48	4	1337	4	MAPK6	15	52356350	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		52356350	50175042	32	5041										
IGDCC4	0	genome.wustl.edu	37	chr15	65693239	65693239	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ccactgtggtgttctctgggGctgccacaatgaccacgtcc	11	14	1	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	15	65693239	65693239	G	C	SNP	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	missense	c.746	p.A249G	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	79	0	0	54	18	25	-	-	-	C	65693239	G	C	65693239	3	2	72	1	0	0	0	0	1	0	0	0	7623	1203	42	4	3070	4	IGDCC4	15	65693239	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	13336889	65693239	36838153	33	5042										
RNF40	0	genome.wustl.edu	37	chr16	30780540	30780540	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tgctctcagagatggatgtgAcaggtcaggcttttgaggac	14	7	2	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	16	30780540	30780540	A	G	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.2281	p.T761A	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	223	0	0	350	157	30.84	-	-	-	G	30780540	A	G	30780540	3	3	72	1	0	0	0	0	1	0	0	0	13579	275	10	5	2339	5	RNF40	16	30780540	Missense_Mutation	SNP	A	TCGA-A2-A0YE-01A-11D-A10G-09		30780540	59574213	34	5043										
TCF25	0	genome.wustl.edu	37	chr16	89940218	89940218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ggagcttggtgtccggcgtcCcgggggcgcagggaaggagg	22	9	0	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	16	89940218	89940218	C	A	SNP	TCF25	ENST00000263346	human	ensembl	69_37n	1	known	missense	c.143	p.P48H	0.353	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	20	0	0	10	12	54.55	-	-	-	A	89940218	C	A	89940218	3	1	72	1	0	0	0	0	1	0	0	0	15788	623	22	4	145	4	TCF25	16	89940218	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09	59159678	89940218	414535	35	5044										
TP53	0	genome.wustl.edu	37	chr17	7578445	7578445	+	Frame_Shift_Del	DEL	A	A	-													0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	tgtgctgtgactgcttgtagAtggccatggcgcggacgcgg							TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	17	7578445	7578445	A	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.485	p.I162fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	59	0	0	42	81	64.29	-	-	-	-	7578445	A	-	7578445	7	5	72	1	0	1	0	1	0	0	0	0	16477	333	12	0	813	0	TP53	17	7578445	Frame_Shift_Del	DEL	A	TCGA-A2-A0YE-01A-11D-A10G-09		7578445	73616765	36	5045										
STAC2	0	genome.wustl.edu	37	chr17	37371458	37371458	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	ccatagcgcagggtctcgtaGacagggtccaccttcccact	10	15	1	1			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	17	37371458	37371458	G	T	SNP	STAC2	ENST00000584501	human	ensembl	69_37n	-1	known	missense	c.410	p.S137Y	0.982	NULL	NULL	-	no_errors	STAC2	HGNC	ENSG00000141750	171	1	0.58	204	84	29.17	-	-	-	T	37371458	G	T	37371458	3	4	72	1	0	0	0	0	1	0	0	0	15331	929	33	2	651	2	STAC2	17	37371458	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	29793013	37371458	43823752	37	5046										
CTAGE1	0	genome.wustl.edu	37	chr18	19995673	19995673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	cccttggagaaaaataatctGgagaagctccaaacacggtt	9	9	1	2			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	18	19995673	19995673	G	A	SNP	CTAGE1	ENST00000391403	human	ensembl	69_37n	-1	known	missense	c.2102	p.P701L	0.373	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710	64	0	0	31	78	71.56	-	-	-	A	19995673	G	A	19995673	3	1	72	1	0	0	0	0	1	0	0	0	4024	1348	47	4	139	4	CTAGE1	18	19995673	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		19995673	58081575	38	5047										
RYR1	0	genome.wustl.edu	37	chr19	39018370	39018370	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	gaggacgccgatgaccccgaGaaaatcgtgcgcagagtcca	13	12	0	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	19	39018370	39018370	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.10770	p.E3590	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	66	0	0	66	8	10.81	-	-	-	A	39018370	G	A	39018370	2	1	72	1	0	0	0	0	0	0	0	1	13854	933	33	2		2	RYR1	19	39018370	Silent	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		39018370	20110613	39	5048										
ZNF114	0	genome.wustl.edu	37	chr19	48785718	48785718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	agaggaatctctacagagacGtgatgctggaaaattctagg	12	6	2	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	19	48785718	48785718	G	A	SNP	ZNF114	ENST00000315849	human	ensembl	69_37n	1	known	missense	c.100	p.V34M	0.670	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	87	0	0	85	91	51.7	-	-	-	A	48785718	G	A	48785718	3	1	72	1	0	0	0	0	1	0	0	0	17812	1145	40	1	106	1	ZNF114	19	48785718	Missense_Mutation	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	9767348	48785718	10343265	40	5049										
ZFP64	0	genome.wustl.edu	37	chr20	50701502	50701502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	agtggactctgctgtgcacgCgcagggcggccgcgctggag	18	12	1	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	20	50701502	50701502	C	T	SNP	ZFP64	ENST00000361387	human	ensembl	69_37n	-1	known	missense	c.1532	p.R511H	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	47	0	0	22	18	45	-	-	-	T	50701502	C	T	50701502	3	4	72	1	0	0	0	0	1	0	0	0	17748	768	27	1	409	1	ZFP64	20	50701502	Missense_Mutation	SNP	C	TCGA-A2-A0YE-01A-11D-A10G-09		50701502	12324018	41	5050										
CSF2RA	0	genome.wustl.edu	37	chrX	1404639	1404639	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	aaaaaaggaaaagaaaagagGaaattctgaacccagtgccc	9	7	1	3			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	X	1404639	1404639	G	T	SNP	CSF2RA	ENST00000477940	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223	86	0	0	79	52	38.24	-	-	-	T	1404639	G	T	1404639	1	4	72	0	1	0	0	0	0	0	0	0	3966	1189	41	2		2	CSF2RA	23	1404639	RNA	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09		1404639	153865921	42	5051										
HAUS7	0	genome.wustl.edu	37	chrX	152720739	152720739	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.119047619047619	5	0.470388168039594	1.65283018867925	1.37735849056604	1.73982125124131	0.282051282051282	0.930327025915261	0	acacgcaggaccccacaccgGatctgggcctagctagtgcc	11	16	1	0			TCGA-A2-A0YE-01A-11D-A10G-09	TCGA-A2-A0YE-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a4ca2a3-9918-465b-823f-403419bd9740	55851e9c-80b4-4bde-a645-c29a84f61a20	X	152720739	152720739	G	A	SNP	HAUS7	ENST00000484394	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HAUS7	HGNC	ENSG00000213397	11	0	0	7	5	41.67	-	-	-	A	152720739	G	A	152720739	1	1	72	0	1	0	0	0	0	0	0	0	7022	1189	41	2		2	HAUS7	23	152720739	RNA	SNP	G	TCGA-A2-A0YE-01A-11D-A10G-09	151316100	152720739	2549821	43	5052										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150527109	150527109	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggtcaggagacagcacaggTggtgagtggtctgcagaagg	19	6	2	3			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	1	150527109	150527109	T	C	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	silent	c.1302	p.G434	0.001	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	10	0	0	11	8	42.11	-	-	-	C	150527109	T	C	150527109	2	2	73	1	0	0	0	0	0	0	0	1	277	1711	59	5		5	ADAMTSL4	1	150527109	Silent	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09		150527109	98723512	1	5053										
MNDA	0	genome.wustl.edu	37	chr1	158817523	158817523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatcttcttttgcagaaaagCgtacacaagaagaacacaat	6	8	2	3			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	1	158817523	158817523	C	T	SNP	MNDA	ENST00000438394	human	ensembl	69_37n	1	known	missense	c.109	p.R37C	0.000	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MNDA	HGNC	ENSG00000163563	56	0	0	75	38	33.63	-	-	-	T	158817523	C	T	158817523	3	4	73	1	0	0	0	0	1	0	0	0	9748	767	27	1	1011	1	MNDA	1	158817523	Missense_Mutation	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09	8290414	158817523	90433098	2	5054										
TPR	0	genome.wustl.edu	37	chr1	186304588	186304588	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggactttagcgcagtaatgCgaacatccaattcatctttc	8	10	2	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	1	186304588	186304588	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.4793	p.R1598P	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	214	0	0	176	83	32.05	-	-	-	G	186304588	C	G	186304588	3	3	73	1	0	0	0	0	1	0	0	0	16512	768	27	3	2370	3	TPR	1	186304588	Missense_Mutation	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09	27487065	186304588	62946033	3	5055										
REG1A	0	genome.wustl.edu	37	chr2	79350284	79350284	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgacttataggattccagaaAtggaaggatgtgccttgtga	12	5	0	3			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	2	79350284	79350284	A	G	SNP	REG1A	ENST00000233735	human	ensembl	69_37n	1	known	silent	c.444	p.K148	0.082	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386	106	0	0	90	63	41.18	-	-	-	G	79350284	A	G	79350284	2	3	73	1	0	0	0	0	0	0	0	1	13293	98	4	5		5	REG1A	2	79350284	Silent	SNP	A	TCGA-A2-A0YF-01A-21D-A10G-09		79350284	163849089	4	5056										
FAM117B	0	genome.wustl.edu	37	chr2	203630190	203630190	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaaaacagcttcatgaaatCccagccttttattgtcctga	5	12	1	2			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	2	203630190	203630190	C	A	SNP	FAM117B	ENST00000392238	human	ensembl	69_37n	1	known	silent	c.1473	p.I491	0.999	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	39	0	0	82	28	25.45	-	-	-	A	203630190	C	A	203630190	2	1	73	1	0	0	0	0	0	0	0	1	5450	845	30	2		2	FAM117B	2	203630190	Silent	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09	124279906	203630190	39569183	5	5057										
CYP27A1	0	genome.wustl.edu	37	chr2	219647024	219647024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgccctcccctcggacaaggCcaccggagctcccggagccg	12	20	0	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	2	219647024	219647024	C	T	SNP	CYP27A1	ENST00000258415	human	ensembl	69_37n	1	known	missense	c.119	p.A40V	0.001	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP27A1	HGNC	ENSG00000135929	13	0	0	24	17	41.46	-	-	-	T	219647024	C	T	219647024	3	4	73	1	0	0	0	0	1	0	0	0	4189	739	26	4	121	4	CYP27A1	2	219647024	Missense_Mutation	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09	16016834	219647024	23552349	6	5058										
PDE12	0	genome.wustl.edu	37	chr3	57543003	57543003	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctctcatccgcactgtctcTtacaacatcctggcagacac	6	16	2	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	3	57543003	57543003	T	C	SNP	PDE12	ENST00000311180	human	ensembl	69_37n	1	known	silent	c.897	p.S299	0.937	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	17	0	0	28	29	50.88	-	-	-	C	57543003	T	C	57543003	2	2	73	1	0	0	0	0	0	0	0	1	11705	1596	56	5		5	PDE12	3	57543003	Silent	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09		57543003	140479427	7	5059										
OR5K4	0	genome.wustl.edu	37	chr3	98073612	98073612	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaaaaattatgaggaattaTaacattcttaaacaaacttg	4	4	1	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	3	98073612	98073612	T	C	SNP	OR5K4	ENST00000354924	human	ensembl	69_37n	1	known	silent	c.915	p.Y305	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5K4	HGNC	ENSG00000196098	58	0	0	13	21	61.76	-	-	-	C	98073612	T	C	98073612	2	2	73	1	0	0	0	0	0	0	0	1	11242	1413	49	5		5	OR5K4	3	98073612	Silent	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09	40530609	98073612	99948818	8	5060										
GPR160	0	genome.wustl.edu	37	chr3	169802155	169802155	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taaaacaaccaagctttcatTtaagtgtcaaaaattatttt	3	6	2	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	3	169802155	169802155	T	A	SNP	GPR160	ENST00000355897	human	ensembl	69_37n	1	known	missense	c.395	p.F132Y	0.000	pfscan_GPCR_Rhodpsn_supfam	pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR160	HGNC	ENSG00000173890	131	0	0	61	33	34.74	-	-	-	A	169802155	T	A	169802155	3	1	73	1	0	0	0	0	1	0	0	0	6714	1841	64	5	397	5	GPR160	3	169802155	Missense_Mutation	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09	71728543	169802155	28220275	9	5061										
MAP3K1	0	genome.wustl.edu	37	chr5	56181812	56181814	+	In_Frame_Del	DEL	GTT	GTT	-													0	0	1	0	0	0	1	1	0	gagccttcaaagaatcagtaGttattaactacactgaacag							TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	5	56181812	56181814	GTT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	in_frame_del	c.4036_4038	p.V1346in_frame_del	0.983:1.000:0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	139	0	0	104	50	31.45	-	-	-	-	56181814	GTT	-	56181812	7	5	73	1	0	1	0	1	0	0	0	0	9314	1029	36	0	4102	0	MAP3K1	5	56181812	In_Frame_Del	DEL	GTT	TCGA-A2-A0YF-01A-21D-A10G-09		56181812	124733448	10	5062										
RIOK2	0	genome.wustl.edu	37	chr5	96506986	96506986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atggtcactttcatccaaaaTgagattaaattcattaaaat	4	6	3	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	5	96506986	96506986	T	C	SNP	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	missense	c.703	p.I235V	1.000	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	115	0	0	81	53	39.55	-	-	-	C	96506986	T	C	96506986	3	2	73	1	0	0	0	0	1	0	0	0	13464	1464	51	5	1003	5	RIOK2	5	96506986	Missense_Mutation	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09	40325174	96506986	84408274	11	5063										
IMPG1	0	genome.wustl.edu	37	chr6	76640790	76640790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggtttgcagcgacactccGcttcctcagtccgttcgttc	9	15	1	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	6	76640790	76640790	G	A	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.2123	p.A708V	0.876	pfscan_EG-like_dom	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	31	0	0	99	61	38.12	-	-	-	A	76640790	G	A	76640790	3	1	73	1	0	0	0	0	1	0	0	0	7782	1087	38	1	282	1	IMPG1	6	76640790	Missense_Mutation	SNP	G	TCGA-A2-A0YF-01A-21D-A10G-09		76640790	94474277	12	5064										
CALD1	0	genome.wustl.edu	37	chr7	134645312	134645312	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggcttgaaggtaggggtttCtagccgcatcaatgaatggc	14	7	2	2			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	7	134645312	134645312	C	A	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.1541	p.S514Y	1.000	pfam_Caldesmon_LSP,prints_Caldesmon	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	93	0	0	119	67	35.83	-	-	-	A	134645312	C	A	134645312	3	1	73	1	0	0	0	0	1	0	0	0	2606	913	32	2	2327	2	CALD1	7	134645312	Missense_Mutation	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09		134645312	24493351	13	5065										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123239714	123239714	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcagctcttcatagtctgaTgattgtttcttttcctggaa	7	8	5	2			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	9	123239714	123239714	T	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	silent	c.1641	p.S547	0.998	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	203	0	0	211	111	34.47	-	-	-	A	123239714	T	A	123239714	2	1	73	1	0	0	0	0	0	0	0	1	3175	1451	51	5		5	CDK5RAP2	9	123239714	Silent	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09		123239714	17973717	14	5066										
SORCS1	0	genome.wustl.edu	37	chr10	108427518	108427518	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatggattgaaccaaaatgcCggcaggcactggccattgct	12	10	0	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	10	108427518	108427518	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	silent	c.2232	p.P744	0.008	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	37	0	0	68	26	27.66	-	-	-	T	108427518	C	T	108427518	2	4	73	1	0	0	0	0	0	0	0	1	15019	639	23	1		1	SORCS1	10	108427518	Silent	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09		108427518	27107229	15	5067										
TMEM218	0	genome.wustl.edu	37	chr11	124967604	124967604	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gcactaaggaaagccagcagGacatagcggccaatgaaaaa	11	9	0	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	11	124967604	124967604	G	A	SNP	TMEM218	ENST00000455225	human	ensembl	69_37n	-1	known	silent	c.246	p.V82	1.000	NULL	NULL	-	no_errors	TMEM218	HGNC	ENSG00000150433	39	0	0	20	57	74.03	-	-	-	A	124967604	G	A	124967604	2	1	73	1	0	0	0	0	0	0	0	1	16236	1161	41	2		2	TMEM218	11	124967604	Silent	SNP	G	TCGA-A2-A0YF-01A-21D-A10G-09		124967604	10038912	16	5068										
BAIAP3	0	genome.wustl.edu	37	chr16	1397942	1397942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctgggcccaccgcatctcTttccactggtccgcagccag	10	17	1	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	16	1397942	1397942	T	C	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	missense	c.3178	p.F1060L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	8	0	0	18	6	25	-	-	-	C	1397942	T	C	1397942	3	2	73	1	0	0	0	0	1	0	0	0	1308	1609	56	5	3304	5	BAIAP3	16	1397942	Missense_Mutation	SNP	T	TCGA-A2-A0YF-01A-21D-A10G-09		1397942	88956811	17	5069										
RBBP6	0	genome.wustl.edu	37	chr16	24567190	24567190	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cctccatcttacacgtgtttCcgttgtggtaaacctggaca	8	12	1	0			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	16	24567190	24567190	C	T	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	silent	c.486	p.F162	0.998	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	120	0	0	167	52	23.74	-	-	-	T	24567190	C	T	24567190	2	4	73	1	0	0	0	0	0	0	0	1	13186	854	30	2		2	RBBP6	16	24567190	Silent	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09	23169248	24567190	65787563	18	5070										
CTCF	0	genome.wustl.edu	37	chr16	67645853	67645854	+	Splice_Site	INS	-	-	TAC													0	0	1	0	0	0	1	1	0	gtgttttattttgcacatagINSgtgtaaagaagacattccag							TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	16	67645853	67645854	-	TAC	INS	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	splice_site_ins	c.782-1_782-1	e2-1	1.000:1.000	-	-	-	no_errors	CTCF	HGNC	ENSG00000102974	61	0	0	40	51	56.04	-	-	-	TAC	67645854	-	TAC	67645853	8	5	73	1	0	1	1	0	0	0	1	0	4032	1014	35	0	787	0	CTCF	16	67645853	Splice_Site	INS	-	TCGA-A2-A0YF-01A-21D-A10G-09	43078663	67645853	22708900	19	5071										
PIP5K1C	0	genome.wustl.edu	37	chr19	3633459	3633460	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	cgctctcgccgtcggaggccINSgggggggcctgggcgctata							TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	19	3633459	3633460	-	G	INS	PIP5K1C	ENST00000335312	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1980_1979	p.A661fs	0.922:0.997	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	10	0	0	15	5	25	-	-	-	G	3633460	-	G	3633459	7	5	73	1	0	1	1	0	0	0	0	0	12015	639	23	0	34	0	PIP5K1C	19	3633459	Frame_Shift_Ins	INS	-	TCGA-A2-A0YF-01A-21D-A10G-09		3633459	55495524	20	5072										
ZNF627	0	genome.wustl.edu	37	chr19	11727643	11727643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagcagtgtgtgtggagaaGttggcatgggtccttcatca	14	6	2	1			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	19	11727643	11727643	G	T	SNP	ZNF627	ENST00000361113	human	ensembl	69_37n	1	known	missense	c.325	p.V109F	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF627	HGNC	ENSG00000198551	105	0	0	128	82	39.05	-	-	-	T	11727643	G	T	11727643	3	4	73	1	0	0	0	0	1	0	0	0	18147	1029	36	4	339	4	ZNF627	19	11727643	Missense_Mutation	SNP	G	TCGA-A2-A0YF-01A-21D-A10G-09	8094184	11727643	47401340	21	5073										
ZNF486	0	genome.wustl.edu	37	chr19	20308876	20308877	+	Frame_Shift_Del	DEL	AA	AA	-													0	0	1	0	0	0	1	1	0	cctcagaccttaataaacatAagagaattcatattggacag							TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	19	20308876	20308877	AA	-	DEL	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	frame_shift_del	c.1357_1358	p.K453fs	0.994:0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	114	0	0	84	10	10.42	-	-	-	-	20308877	AA	-	20308876	7	5	73	1	0	1	0	1	0	0	0	0	18035	363	13	0	1371	0	ZNF486	19	20308876	Frame_Shift_Del	DEL	AA	TCGA-A2-A0YF-01A-21D-A10G-09	8581233	20308876	38820107	22	5074										
CYTH4	0	genome.wustl.edu	37	chr22	37707034	37707034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attggccttgcgcagggggcCgcgtgaagacgtggaaacgg	18	9	0	2			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	22	37707034	37707034	C	T	SNP	CYTH4	ENST00000248901	human	ensembl	69_37n	1	known	missense	c.814	p.R272C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH4	HGNC	ENSG00000100055	18	0	0	41	8	16.33	-	-	-	T	37707034	C	T	37707034	3	4	73	1	0	0	0	0	1	0	0	0	4237	652	23	1	852	1	CYTH4	22	37707034	Missense_Mutation	SNP	C	TCGA-A2-A0YF-01A-21D-A10G-09		37707034	13597532	23	5075										
HDAC8	0	genome.wustl.edu	37	chrX	71571588	71571588	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggggcggtgctcacctttgAtgtagttgaggatttgttgg	16	5	1	2			TCGA-A2-A0YF-01A-21D-A10G-09	TCGA-A2-A0YF-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11571107-fe70-4140-afff-f4792a4fd473	0cf57576-caf9-46f4-9500-c7d5f1579b51	X	71571588	71571588	A	T	SNP	HDAC8	ENST00000373573	human	ensembl	69_37n	-1	known	missense	c.1106	p.I369N	1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099	89	0	0	243	136	35.79	-	-	-	T	71571588	A	T	71571588	3	4	73	1	0	0	0	0	1	0	0	0	7064	333	12	5	35	5	HDAC8	23	71571588	Missense_Mutation	SNP	A	TCGA-A2-A0YF-01A-21D-A10G-09		71571588	83698972	24	5076										
PTCHD2	0	genome.wustl.edu	37	chr1	11591050	11591050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aaggccatcgcagccaactcCgagctggtgaagccgggtgg	15	12	0	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	1	11591050	11591050	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	silent	c.3189	p.S1063	0.003	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	24	0	0	21	15	41.67	-	-	-	T	11591050	C	T	11591050	2	4	74	1	0	0	0	0	0	0	0	1	12813	639	23	1		1	PTCHD2	1	11591050	Silent	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		11591050	237659571	1	5077										
NBPF1	0	genome.wustl.edu	37	chr1	16891340	16891340	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tgatcttcttccccttctttTcttccccttctccttctttt	1	16	6	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	1	16891340	16891340	T	A	SNP	NBPF1	ENST00000401007	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	19	0	0	25	6	19.35	-	-	-	A	16891340	T	A	16891340	1	1	74	0	1	0	0	0	0	0	0	0	10264	1780	62	5		5	NBPF1	1	16891340	RNA	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	5300290	16891340	232359281	2	5078										
CROCC	0	genome.wustl.edu	37	chr1	17274957	17274957	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aaggagcacgctggcctggcTgtgcagctggtggctgcgga	18	10	0	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	1	17274957	17274957	T	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.2646	p.A882	0.152	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	10	0	0	10	4	28.57	-	-	-	C	17274957	T	C	17274957	2	2	74	1	0	0	0	0	0	0	0	1	3923	1567	55	5		5	CROCC	1	17274957	Silent	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	383617	17274957	231975664	3	5079										
ABL2	0	genome.wustl.edu	37	chr1	179079445	179079445	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aaactggaagcagaattttcTgtggcatcttgtgccccttc	9	10	2	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	1	179079445	179079445	T	A	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	silent	c.1797	p.T599	0.739	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	202	0	0	419	76	15.35	-	-	-	A	179079445	T	A	179079445	2	1	74	1	0	0	0	0	0	0	0	1	93	1567	55	5		5	ABL2	1	179079445	Silent	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	161804488	179079445	70171176	4	5080										
THADA	0	genome.wustl.edu	37	chr2	43805695	43805695	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ggtgaaacatagtcttaataAaaagaataatagctaatcca	6	5	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	2	43805695	43805695	A	C	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.773	p.F258C	0.998	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	81	0	0	48	11	18.33	-	-	-	C	43805695	A	C	43805695	3	2	74	1	0	0	0	0	1	0	0	0	15935	14	1	5	5208	5	THADA	2	43805695	Missense_Mutation	SNP	A	TCGA-A2-A0YG-01A-21D-A10G-09		43805695	199393678	5	5081										
PAX8	0	genome.wustl.edu	37	chr2	113994287	113994287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gtgctgttgagcaagggcagCgggtagaggccctggggagc	20	8	0	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	2	113994287	113994287	C	T	SNP	PAX8	ENST00000468980	human	ensembl	69_37n	-1	putative	missense	c.145	p.A49T	0.097	NULL	pfam_Pax2_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PAX8	HGNC	ENSG00000125618	19	0	0	28	9	24.32	-	-	-	T	113994287	C	T	113994287	3	4	74	1	0	0	0	0	1	0	0	0	11558	755	27	1		1	PAX8	2	113994287	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09	70188592	113994287	129205086	6	5082										
SP110	0	genome.wustl.edu	37	chr2	231033848	231033848	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tacagaacagggtcaaggaaGagtccagaaaccgccgtcat	11	10	2	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	2	231033848	231033848	G	A	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.2134	p.L712F	0.000	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	71	0	0	104	21	16.8	-	-	-	A	231033848	G	A	231033848	3	1	74	1	0	0	0	0	1	0	0	0	15050	942	33	2	11	2	SP110	2	231033848	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	117039561	231033848	12165525	7	5083										
SP110	0	genome.wustl.edu	37	chr2	231077653	231077653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tggtgggggcagcgccagtgGggtatggagggagcttcctt	20	7	0	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	2	231077653	231077653	G	T	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.406	p.P136T	0.011	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	47	0	0	147	34	18.68	-	-	-	T	231077653	G	T	231077653	3	4	74	1	0	0	0	0	1	0	0	0	15050	1232	43	4	1863	4	SP110	2	231077653	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	43805	231077653	12121720	8	5084										
MUC4	0	genome.wustl.edu	37	chr3	195516064	195516064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ctgtgcccgctgaggtggttCgtgaccctgaggaggccggt	17	11	0	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	3	195516064	195516064	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.2387	p.R796Q	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	69	0	0	193	38	16.38	-	-	-	T	195516064	C	T	195516064	3	4	74	1	0	0	0	0	1	0	0	0	10050	884	31	1		1	MUC4	3	195516064	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		195516064	2506366	9	5085										
BMPR1B	0	genome.wustl.edu	37	chr4	96035920	96035920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aagaggatgactctgggttgCctgtggtcacttctggttgc	14	8	3	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	4	96035920	96035920	C	T	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	missense	c.283	p.P95S	0.914	pfam_Activin_rcpt	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	169	0	0	151	117	43.66	-	-	-	T	96035920	C	T	96035920	3	4	74	1	0	0	0	0	1	0	0	0	1475	739	26	4	199	4	BMPR1B	4	96035920	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		96035920	95118356	10	5086										
PPWD1	0	genome.wustl.edu	37	chr5	64865548	64865548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tgaatttgttaaacattttcGtagtcacctgggtaagaatt	8	5	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	5	64865548	64865548	G	A	SNP	PPWD1	ENST00000261308	human	ensembl	69_37n	1	known	missense	c.389	p.R130H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593	165	0	0	132	31	19.02	-	-	-	A	64865548	G	A	64865548	3	1	74	1	0	0	0	0	1	0	0	0	12491	1145	40	1	399	1	PPWD1	5	64865548	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09		64865548	116049712	11	5087										
CMYA5	0	genome.wustl.edu	37	chr5	79033448	79033448	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tttctgaaggctgtgagataTtgaatattcatgctccggcc	10	8	2	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	5	79033448	79033448	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.8860	p.L2954	0.551	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	64	0	0	40	27	40.3	-	-	-	C	79033448	T	C	79033448	2	2	74	1	0	0	0	0	0	0	0	1	3620	1490	52	5		5	CMYA5	5	79033448	Silent	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	14167900	79033448	101881812	12	5088										
VCAN	0	genome.wustl.edu	37	chr5	82815167	82815167	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tctttgaaattatttttctaGctaaagaggctacaaccatc	5	8	2	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	5	82815167	82815167	G	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	splice_site	c.1043-1	e6-1	1.000	-	-	-	no_errors	VCAN	HGNC	ENSG00000038427	57	0	0	52	6	10.34	-	-	-	C	82815167	G	C	82815167	5	2	74	1	0	0	0	0	0	0	1	0	17235	985	34	4	1064	4	VCAN	5	82815167	Splice_Site	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	3781719	82815167	98100093	13	5089										
VCAN	0	genome.wustl.edu	37	chr5	82817148	82817148	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tcaagacatacttgtcattgAtcagactcgccttgaagcga	8	10	3	4			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	5	82817148	82817148	A	G	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.3023	p.D1008G	0.994	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	81	0	0	108	29	21.17	-	-	-	G	82817148	A	G	82817148	3	3	74	1	0	0	0	0	1	0	0	0	17235	333	12	5	3045	5	VCAN	5	82817148	Missense_Mutation	SNP	A	TCGA-A2-A0YG-01A-21D-A10G-09	1981	82817148	98098112	14	5090										
PDE6A	0	genome.wustl.edu	37	chr5	149310662	149310662	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gaaagcacggactgtgtacaGggctttgtggaactgtcgtt	14	7	0	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	5	149310662	149310662	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	silent	c.787	p.L263	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	100	0	0	104	64	38.1	-	-	-	A	149310662	G	A	149310662	2	1	74	1	0	0	0	0	0	0	0	1	11718	991	35	4		4	PDE6A	5	149310662	Silent	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	66493514	149310662	31604598	15	5091										
NUP153	0	genome.wustl.edu	37	chr6	17688750	17688750	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gcgtggaacctcgcttgtgtCtgttgaacagctgcatacat	11	10	1	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	6	17688750	17688750	C	T	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.211	p.D71N	0.567	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	121	0	0	186	53	22.18	-	-	-	T	17688750	C	T	17688750	3	4	74	1	0	0	0	0	1	0	0	0	10828	913	32	2	4300	2	NUP153	6	17688750	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		17688750	153426317	16	5092										
DSE	0	genome.wustl.edu	37	chr6	116720421	116720421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	atctgatgccacgatgaggaCtcacacacggggggctccca	12	13	2	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	6	116720421	116720421	C	T	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.65	p.T22I	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	32	0	0	58	13	18.31	-	-	-	T	116720421	C	T	116720421	3	4	74	1	0	0	0	0	1	0	0	0	4809	565	20	4	10	4	DSE	6	116720421	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09	99031671	116720421	54394646	17	5093										
TNFAIP3	0	genome.wustl.edu	37	chr6	138198386	138198386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gcacaactcatctcatcaatGccgcaaagtaagcagtttat	6	11	3	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	6	138198386	138198386	G	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	missense	c.979	p.A327S	1.000	NULL	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	67	0	0	81	55	40.44	-	-	-	T	138198386	G	T	138198386	3	4	74	1	0	0	0	0	1	0	0	0	16369	1319	46	4	997	4	TNFAIP3	6	138198386	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	21477965	138198386	32916681	18	5094										
RELN	0	genome.wustl.edu	37	chr7	103234235	103234235	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ctgatggtgtggcagcacagAaggtttcatttttaaccatt	10	7	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	7	103234235	103234235	A	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.3806	p.F1269C	1.000	superfamily_Growth_fac_rcpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	135	0	0	263	47	15.16	-	-	-	C	103234235	A	C	103234235	3	2	74	1	0	0	0	0	1	0	0	0	13303	246	9	5	6732	5	RELN	7	103234235	Missense_Mutation	SNP	A	TCGA-A2-A0YG-01A-21D-A10G-09		103234235	55904428	19	5095										
STRA8	0	genome.wustl.edu	37	chr7	134925368	134925368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gcttgagcatcgggtggcccGgagacggctgtcccaggccc	16	14	0	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	7	134925368	134925368	G	A	SNP	STRA8	ENST00000275764	human	ensembl	69_37n	1	known	missense	c.158	p.R53Q	0.006	superfamily_HLH_DNA-bd	superfamily_HLH_DNA-bd	-	no_errors	STRA8	HGNC	ENSG00000146857	25	0	0	34	10	22.73	-	-	-	A	134925368	G	A	134925368	3	1	74	1	0	0	0	0	1	0	0	0	15414	1116	39	1	164	1	STRA8	7	134925368	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	31691133	134925368	24213295	20	5096										
C8orf86	0	genome.wustl.edu	37	chr8	38385938	38385938	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gtctgcaaatgatttgcattCttggctctttggaactgcct	9	9	3	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	8	38385938	38385938	C	T	SNP	C8orf86	ENST00000358138	human	ensembl	69_37n	-1	known	missense	c.218	p.R73K	0.999	NULL	NULL	-	no_errors	C8orf86	HGNC	ENSG00000196166	134	0	0	167	53	24.09	-	-	-	T	38385938	C	T	38385938	3	4	74	1	0	0	0	0	1	0	0	0	2467	913	32	2	465	2	C8orf86	8	38385938	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		38385938	107978084	21	5097										
ZFHX4	0	genome.wustl.edu	37	chr8	77764150	77764150	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	taaacagcaaagatacccatTtagatgccaaagaattaaat	5	7	0	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	8	77764150	77764150	T	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.4993	p.L1665I	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	63	0	0	117	41	25.79	-	-	-	A	77764150	T	A	77764150	3	1	74	1	0	0	0	0	1	0	0	0	17731	1838	64	5	5027	5	ZFHX4	8	77764150	Missense_Mutation	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	39378212	77764150	68599872	22	5098										
POP1	0	genome.wustl.edu	37	chr8	99146755	99146755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aagcgccaagggagccttgtGctttatcgggtgaataaata	12	7	0	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	8	99146755	99146755	G	A	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	silent	c.879	p.V293	0.436	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	121	0	0	141	137	49.28	-	-	-	A	99146755	G	A	99146755	2	1	74	1	0	0	0	0	0	0	0	1	12325	1306	46	4		4	POP1	8	99146755	Silent	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	21382605	99146755	47217267	23	5099										
EPPK1	0	genome.wustl.edu	37	chr8	144941883	144941883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ctcccctctgatggccgccaCtttgatgccttggttttgcg	10	14	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	8	144941883	144941883	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	missense	c.5539	p.V1847M	0.897	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	165	0	0	280	131	31.8	-	-	-	T	144941883	C	T	144941883	3	4	74	1	0	0	0	0	1	0	0	0	5227	565	20	4	1727	4	EPPK1	8	144941883	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09	45795128	144941883	1422139	24	5100										
VCP	0	genome.wustl.edu	37	chr9	35057429	35057429	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tgggcaaacatctcatacttCcgaatgtcattgtcactgac	7	11	3	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	9	35057429	35057429	C	T	SNP	VCP	ENST00000358901	human	ensembl	69_37n	-1	known	silent	c.2259	p.R753	1.000	pfam_Vps4_C,tigrfam_ATPase_AAA_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	27	0	0	54	14	20.59	-	-	-	T	35057429	C	T	35057429	2	4	74	1	0	0	0	0	0	0	0	1	17237	842	30	2		2	VCP	9	35057429	Silent	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		35057429	106156002	25	5101										
TLE4	0	genome.wustl.edu	37	chr9	82227582	82227582	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tttttgcaggcagagattgtCaagaggctgaatgctatctg	12	6	2	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	9	82227582	82227582	C	T	SNP	TLE4	ENST00000376520	human	ensembl	69_37n	1	known	silent	c.264	p.V88	1.000	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829	222	0	0	308	94	23.33	-	-	-	T	82227582	C	T	82227582	2	4	74	1	0	0	0	0	0	0	0	1	16036	813	29	2		2	TLE4	9	82227582	Silent	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09	47170153	82227582	58985849	26	5102										
DBC1	0	genome.wustl.edu	37	chr9	121930072	121930072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cttgttgctcttgagagtgaGggacatgcgcttgcgccacc	13	11	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	9	121930072	121930072	G	T	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.1576	p.L526I	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	28	0	0	70	19	21.35	-	-	-	T	121930072	G	T	121930072	3	4	74	1	0	0	0	0	1	0	0	0	4279	1000	35	4	713	4	DBC1	9	121930072	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	39702490	121930072	19283359	27	5103										
CYP2C19	0	genome.wustl.edu	37	chr10	96535205	96535205	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cggcgtttctccctcatgacGctgcggaattttgggatggg	14	10	2	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	10	96535205	96535205	G	A	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	silent	c.390	p.T130	0.075	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	183	0	0	264	87	24.79	-	-	-	A	96535205	G	A	96535205	2	1	74	1	0	0	0	0	0	0	0	1	4197	1074	38	1		1	CYP2C19	10	96535205	Silent	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09		96535205	38999542	28	5104										
FBXO3	0	genome.wustl.edu	37	chr11	33795959	33795959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cttgattagatcccgatagtCcaaaaaggataagatgagga	10	6	0	4			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	11	33795959	33795959	C	T	SNP	FBXO3	ENST00000265651	human	ensembl	69_37n	-1	known	missense	c.85	p.D29N	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_ApaG_domain,pfam_F-box_dom_cyclin-like,superfamily_ApaG_domain,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cell_wall_assmbl_KNR4-like,pfscan_ApaG_domain,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO3	HGNC	ENSG00000110429	25	0	0	20	9	31.03	-	-	-	T	33795959	C	T	33795959	3	4	74	1	0	0	0	0	1	0	0	0	5785	855	30	2	1383	2	FBXO3	11	33795959	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		33795959	101210557	29	5105										
MBD6	0	genome.wustl.edu	37	chr12	57922185	57922185	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gcagccggcgggagcctggcCgactggccctcaaatggggg	18	13	1	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	12	57922185	57922185	C	T	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	nonsense	c.2662	p.R888*	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987	17	0	0	13	12	48	-	-	-	T	57922185	C	T	57922185	4	4	74	1	0	0	0	0	0	1	0	0	9419	644	23	1	2692	1	MBD6	12	57922185	Nonsense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		57922185	75929710	30	5106										
KDM2B	0	genome.wustl.edu	37	chr12	121880585	121880585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gggttcctgcttgaagcgccGgaggggcttgttggccagcg	18	10	0	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	12	121880585	121880585	G	A	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	missense	c.2659	p.R887W	0.930	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	16	0	0	19	15	44.12	-	-	-	A	121880585	G	A	121880585	3	1	74	1	0	0	0	0	1	0	0	0	8179	1115	39	1	1423	1	KDM2B	12	121880585	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	63958400	121880585	11971310	31	5107										
VPS37B	0	genome.wustl.edu	37	chr12	123355506	123355506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ctggtatttctgggtcaagcGtgctttcaacgtgtccagct	11	10	3	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	12	123355506	123355506	G	C	SNP	VPS37B	ENST00000267202	human	ensembl	69_37n	-1	known	missense	c.214	p.R72G	0.000	pfam_Mod_r	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722	114	0	0	120	79	39.5	-	-	-	C	123355506	G	C	123355506	3	2	74	1	0	0	0	0	1	0	0	0	17303	1145	40	3	655	3	VPS37B	12	123355506	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	1474921	123355506	10496389	32	5108										
ZNF268	0	genome.wustl.edu	37	chr12	133780735	133780737	+	In_Frame_Del	DEL	ACT	ACT	-													0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aaagccttcatttggaaatcActactcattgtacatgagcg							TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	ACT	ACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	12	133780735	133780737	ACT	-	DEL	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	in_frame_del	c.2463_2465	p.L823in_frame_del	0.001:0.000:0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	96	0	0	96	25	20.33	-	-	-	-	133780737	ACT	-	133780735	7	5	74	1	0	1	0	1	0	0	0	0	17903	146	6	0		0	ZNF268	12	133780735	In_Frame_Del	DEL	ACT	TCGA-A2-A0YG-01A-21D-A10G-09	10425229	133780735	71160	33	5109										
NALCN	0	genome.wustl.edu	37	chr13	101726980	101726980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	gaagctcttgtacatgctgaCgaccactgtcaagaggagca	11	10	2	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	13	101726980	101726980	C	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3988	p.V1330I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	74	0	0	56	18	24.32	-	-	-	T	101726980	C	T	101726980	3	4	74	1	0	0	0	0	1	0	0	0	10220	536	19	1	1264	1	NALCN	13	101726980	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		101726980	13442898	34	5110										
GATM	0	genome.wustl.edu	37	chr15	45661631	45661631	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tattgcacatttcttcaattTcagcaacagcctttttcaaa	3	10	4	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	15	45661631	45661631	T	A	SNP	GATM	ENST00000396659	human	ensembl	69_37n	-1	known	missense	c.377	p.E126V	1.000	NULL	NULL	-	no_errors	GATM	HGNC	ENSG00000171766	234	0	0	253	68	21.18	-	-	-	A	45661631	T	A	45661631	3	1	74	1	0	0	0	0	1	0	0	0	6313	1783	62	5	922	5	GATM	15	45661631	Missense_Mutation	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09		45661631	56869761	35	5111										
TRIP4	0	genome.wustl.edu	37	chr15	64717756	64717756	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cagatgtggaatttcctaatGactatccgtcaggttgtctt	9	8	2	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	15	64717756	64717756	G	A	SNP	TRIP4	ENST00000261884	human	ensembl	69_37n	1	known	missense	c.1501	p.D501N	1.000	pfam_ASCH_domain,superfamily_PUA-like_domain	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671	220	0	0	227	65	22.26	-	-	-	A	64717756	G	A	64717756	3	1	74	1	0	0	0	0	1	0	0	0	16654	1290	45	2	1543	2	TRIP4	15	64717756	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	19056125	64717756	37813636	36	5112										
SIN3A	0	genome.wustl.edu	37	chr15	75684981	75684981	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	agagcaaatctggaataaaaTgatgcatgatttgttttatc	8	4	1	3			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	15	75684981	75684981	T	C	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.2453	p.H818R	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	167	0	0	104	88	45.83	-	-	-	C	75684981	T	C	75684981	3	2	74	1	0	0	0	0	1	0	0	0	14414	1464	51	5	1396	5	SIN3A	15	75684981	Missense_Mutation	SNP	T	TCGA-A2-A0YG-01A-21D-A10G-09	10967225	75684981	26846411	37	5113										
ZCCHC14	0	genome.wustl.edu	37	chr16	87452476	87452476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ccagacacgcccatcacggtAcctactttagaaagggaggg	11	12	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	16	87452476	87452476	A	G	SNP	ZCCHC14	ENST00000561928	human	ensembl	69_37n	-1	known	missense	c.316	p.Y106H	0.001	superfamily_Phox	pfam_Znf_CCHC,pfam_SAM_type1,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC14	HGNC	ENSG00000140948	78	0	0	79	29	26.85	-	-	-	G	87452476	A	G	87452476	3	3	74	1	0	0	0	0	1	0	0	0	17679	378	14	5	2211	5	ZCCHC14	16	87452476	Missense_Mutation	SNP	A	TCGA-A2-A0YG-01A-21D-A10G-09		87452476	2902277	38	5114										
TP53	0	genome.wustl.edu	37	chr17	7579311	7579311	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cagcccctcagggcaactgaCcgtgcaagtcacagacttgg	11	14	2	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	17	7579311	7579311	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.375+1	e3+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	12	0	0	6	10	62.5	-	-	-	A	7579311	C	A	7579311	5	1	74	1	0	0	0	0	0	0	1	0	16477	521	18	4	926	4	TP53	17	7579311	Splice_Site	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		7579311	73615899	39	5115										
ZNF91	0	genome.wustl.edu	37	chr19	23545146	23545146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	aggttttttcacattctttaCatttacaggacttctctgta	5	8	3	0			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	19	23545146	23545146	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.635	p.C212S	0.394	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	220	0	0	129	55	29.89	-	-	-	G	23545146	C	G	23545146	3	3	74	1	0	0	0	0	1	0	0	0	18293	478	17	4	2944	4	ZNF91	19	23545146	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		23545146	35583837	40	5116										
ANKRD27	0	genome.wustl.edu	37	chr19	33095253	33095253	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	agcagaagcagctctaccacGaagacgtgcttttcaatcac	8	12	3	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	19	33095253	33095253	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.2571	p.F857	0.015	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	11	0	0	48	11	18.64	-	-	-	A	33095253	G	A	33095253	2	1	74	1	0	0	0	0	0	0	0	1	655	1049	37	1		1	ANKRD27	19	33095253	Silent	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	9550107	33095253	26033730	41	5117										
ZNF585A	0	genome.wustl.edu	37	chr19	37643072	37643072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	acactcagtgcatacataggGtttctctcctgtatgaattt	7	9	2	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	19	37643072	37643072	G	A	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	missense	c.1729	p.P577S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	100	0	0	79	26	24.76	-	-	-	A	37643072	G	A	37643072	3	1	74	1	0	0	0	0	1	0	0	0	18113	1261	44	4	584	4	ZNF585A	19	37643072	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	4547819	37643072	21485911	42	5118										
BIRC8	0	genome.wustl.edu	37	chr19	53793146	53793146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	tctgattcaattcattttctGtagtgtctttctgagcgctc	7	9	6	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	19	53793146	53793146	G	A	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	missense	c.482	p.T161I	0.000	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	141	0	0	101	62	38.04	-	-	-	A	53793146	G	A	53793146	3	1	74	1	0	0	0	0	1	0	0	0	1445	1377	48	4	232	4	BIRC8	19	53793146	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09	16150074	53793146	5335837	43	5119										
DIDO1	0	genome.wustl.edu	37	chr20	61512792	61512792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	ggccatggagaccccgacggCggccctctgctgcctgagag	15	15	1	2			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	20	61512792	61512792	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.4516	p.A1506T	0.995	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	43	0	0	81	13	13.68	-	-	-	T	61512792	C	T	61512792	3	4	74	1	0	0	0	0	1	0	0	0	4558	768	27	1	2210	1	DIDO1	20	61512792	Missense_Mutation	SNP	C	TCGA-A2-A0YG-01A-21D-A10G-09		61512792	1512728	44	5120										
ATP2B3	0	genome.wustl.edu	37	chrX	152827663	152827663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.841065505936394	1.08117816091954	0	1.20592948717949	0.00793650793650794	0.114145658263305	0	cacagaacagtggctctggtGcctgtttgttggtgttgggg	16	7	1	1			TCGA-A2-A0YG-01A-21D-A10G-09	TCGA-A2-A0YG-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf82035c-9cd1-4355-acdd-8a007708e976	d2825bbf-6083-40da-bd62-f6e7c0cb0204	X	152827663	152827663	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.3122	p.C1041Y	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	42	0	0	71	26	26.8	-	-	-	A	152827663	G	A	152827663	3	1	74	1	0	0	0	0	1	0	0	0	1145	1319	46	4	3192	4	ATP2B3	23	152827663	Missense_Mutation	SNP	G	TCGA-A2-A0YG-01A-21D-A10G-09		152827663	2442897	45	5121										
HNRNPCL1	0	genome.wustl.edu	37	chr1	12907682	12907682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tgaagccacttttgccccttCgtgaggtgtttcctgataga	10	10	0	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	1	12907682	12907682	C	T	SNP	HNRNPCL1	ENST00000317869	human	ensembl	69_37n	-1	known	missense	c.461	p.R154Q	0.963	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172	178	0	0	46	18	28.12	-	-	-	T	12907682	C	T	12907682	3	4	75	1	0	0	0	0	1	0	0	0	7314	884	31	1	422	1	HNRNPCL1	1	12907682	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		12907682	236342939	1	5122										
RHCE	0	genome.wustl.edu	37	chr1	25688942	25688942	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tgctgtcatgagcgtttctcAcgtacaaatgcaggcaacag	10	10	2	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	1	25688942	25688942	A	C	SNP	RHCE	ENST00000413854	human	ensembl	69_37n	-1	known	silent	c.1176	p.R392	0.000	NULL	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHCE	HGNC	ENSG00000188672	313	1	0.32	70	24	25.53	-	-	-	C	25688942	A	C	25688942	2	2	75	1	0	0	0	0	0	0	0	1	13409	174	6	5		5	RHCE	1	25688942	Silent	SNP	A	TCGA-A2-A0YH-01A-11D-A10G-09	12781260	25688942	223561679	2	5123										
PBX1	0	genome.wustl.edu	37	chr1	164815893	164815893	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cagaaggccctggcagtgttCactctgatacctccaactga	9	13	2	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	1	164815893	164815893	C	A	SNP	PBX1	ENST00000420696	human	ensembl	69_37n	1	known	missense	c.1273	p.H425N	1.000	NULL	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX1	HGNC	ENSG00000185630	156	0	0	44	5	10.2	-	-	-	A	164815893	C	A	164815893	3	1	75	1	0	0	0	0	1	0	0	0	11565	826	29	2	1307	2	PBX1	1	164815893	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	139126951	164815893	84434728	3	5124										
CR1	0	genome.wustl.edu	37	chr1	207760857	207760857	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtattttgggaaaatgttctCtatctcctgcctagaaaact	7	8	2	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	1	207760857	207760857	C	G	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.5657	p.S1886C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	156	0	0	84	12	12.5	-	-	-	G	207760857	C	G	207760857	3	3	75	1	0	0	0	0	1	0	0	0	3870	913	32	2	5791	2	CR1	1	207760857	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	42944964	207760857	41489764	4	5125										
MTA3	0	genome.wustl.edu	37	chr2	42871362	42871362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ggacctagatatcaagcagaCattccagaaatgctgttaga	9	8	1	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	42871362	42871362	C	T	SNP	MTA3	ENST00000405094	human	ensembl	69_37n	1	known	silent	c.477	p.D159	1.000	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	209	0	0	43	13	23.21	-	-	-	T	42871362	C	T	42871362	2	4	75	1	0	0	0	0	0	0	0	1	9982	477	17	4		4	MTA3	2	42871362	Silent	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		42871362	200328011	5	5126										
FSHR	0	genome.wustl.edu	37	chr2	49295407	49295407	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tgcacctttttggatgactcGaagcttggtgaggacaaacc	11	9	0	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	49295407	49295407	G	A	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	nonsense	c.175	p.R59*	1.000	prints_FSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	91	0	0	32	7	17.95	-	-	-	A	49295407	G	A	49295407	4	1	75	1	0	0	0	0	0	1	0	0	6122	1066	37	1	1948	1	FSHR	2	49295407	Nonsense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	6424045	49295407	193903966	6	5127										
GPR75	0	genome.wustl.edu	37	chr2	54081234	54081234	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tgagcaatcatgatgtaagaGacagagaccacagcaacaca	9	9	1	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	54081234	54081234	G	C	SNP	GPR75	ENST00000394705	human	ensembl	69_37n	-1	known	silent	c.660	p.V220	0.977	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR75	HGNC	ENSG00000119737	136	0	0	26	7	21.21	-	-	-	C	54081234	G	C	54081234	2	2	75	1	0	0	0	0	0	0	0	1	6758	929	33	2		2	GPR75	2	54081234	Silent	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	4785827	54081234	189118139	7	5128										
SCN9A	0	genome.wustl.edu	37	chr2	167149874	167149874	+	Frame_Shift_Del	DEL	G	G	-													0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tcacacaggtgtacccctctGgacactgactacacacgaga							TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	167149874	167149874	G	-	DEL	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	frame_shift_del	c.977	p.P326fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	84	0	0	11	2	15.38	-	-	-	-	167149874	G	-	167149874	7	5	75	1	0	1	0	1	0	0	0	0	14013	1348	47	0	5035	0	SCN9A	2	167149874	Frame_Shift_Del	DEL	G	TCGA-A2-A0YH-01A-11D-A10G-09	113068640	167149874	76049499	8	5129										
TTN	0	genome.wustl.edu	37	chr2	179445267	179445267	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cttttactggtacatatagtCtcatagtaactccagcacgt	6	10	1	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	179445267	179445267	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.59135	p.R19712K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	144	0	0	55	12	17.91	-	-	-	T	179445267	C	T	179445267	3	4	75	1	0	0	0	0	1	0	0	0	16832	913	32	2	41324	2	TTN	2	179445267	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	12295393	179445267	63754106	9	5130										
C2orf62	0	genome.wustl.edu	37	chr2	219232206	219232206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	agcccctggtatgggaggagGatatggagctctattcgaag	15	7	1	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	2	219232206	219232206	G	A	SNP	C2orf62	ENST00000289388	human	ensembl	69_37n	1	known	missense	c.886	p.D296N	0.993	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428	111	0	0	23	7	23.33	-	-	-	A	219232206	G	A	219232206	3	1	75	1	0	0	0	0	1	0	0	0	2201	1174	41	2	920	2	C2orf62	2	219232206	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	39786939	219232206	23967167	10	5131										
PTPRG	0	genome.wustl.edu	37	chr3	61975361	61975361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtgggggccgtcaccagtctCctattgacattttagaccag	11	11	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	3	61975361	61975361	C	G	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.253	p.P85A	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	166	0	0	25	6	19.35	-	-	-	G	61975361	C	G	61975361	3	3	75	1	0	0	0	0	1	0	0	0	12885	855	30	2	263	2	PTPRG	3	61975361	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		61975361	136047069	11	5132										
PDZRN3	0	genome.wustl.edu	37	chr3	73453303	73453303	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	agattaggttacttactcctCtggcaagagatagggatcca	10	8	1	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	3	73453303	73453303	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.1162	p.E388K	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	108	0	0	24	10	29.41	-	-	-	T	73453303	C	T	73453303	3	4	75	1	0	0	0	0	1	0	0	0	11782	922	32	2	2066	2	PDZRN3	3	73453303	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	11477942	73453303	124569127	12	5133										
GPR87	0	genome.wustl.edu	37	chr3	151017872	151017872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tacttggtaattttgcaagcGtcaagttgaaccccattctt	7	9	2	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	3	151017872	151017872	G	A	SNP	GPR87	ENST00000260843	human	ensembl	69_37n	-1	known	missense	c.17	p.T6M	0.719	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_P2Y13_purnocptor,prints_UDPG_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271	175	1	0.57	52	10	16.13	-	-	-	A	151017872	G	A	151017872	3	1	75	1	0	0	0	0	1	0	0	0	6766	1145	40	1	1067	1	GPR87	3	151017872	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	77564569	151017872	47004558	13	5134										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	42	11	20.75	-	-	-	A	178921553	T	A	178921553	3	1	75	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-A2-A0YH-01A-11D-A10G-09	27903681	178921553	19100877	14	5135										
POLR2H	0	genome.wustl.edu	37	chr3	184082777	184082777	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctcgactgcattgtgagagtGaatctttcaagatggatcta	10	7	3	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	3	184082777	184082777	G	A	SNP	POLR2H	ENST00000296223	human	ensembl	69_37n	1	known	missense	c.97	p.E33K	1.000	pfam_RNA_pol_Rpb8,superfamily_NA-bd_OB-fold-like,smart_RNA_pol_Rpb8,pirsf_RNA_pol_Rpb8	pfam_RNA_pol_Rpb8,superfamily_NA-bd_OB-fold-like,smart_RNA_pol_Rpb8,pirsf_RNA_pol_Rpb8	-	no_errors	POLR2H	HGNC	ENSG00000163882	136	0	0	67	12	15.19	-	-	-	A	184082777	G	A	184082777	3	1	75	1	0	0	0	0	1	0	0	0	12295	1291	45	2	103	2	POLR2H	3	184082777	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	5161224	184082777	13939653	15	5136										
STAP1	0	genome.wustl.edu	37	chr4	68459065	68459065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	catttatatgttcaactgatGaaaacactggtatgtttttc	6	6	1	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	68459065	68459065	G	A	SNP	STAP1	ENST00000265404	human	ensembl	69_37n	1	known	missense	c.817	p.E273K	0.932	pfscan_SH2	pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	STAP1	HGNC	ENSG00000035720	160	0	0	75	20	21.05	-	-	-	A	68459065	G	A	68459065	3	1	75	1	0	0	0	0	1	0	0	0	15343	1291	45	2	847	2	STAP1	4	68459065	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		68459065	122695211	16	5137										
WDFY3	0	genome.wustl.edu	37	chr4	85617213	85617213	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttgtagatatccacttgaccCtcataaaaaagatgatggaa	7	7	1	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	85617213	85617213	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.8811	p.E2937	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	88	0	0	33	11	25	-	-	-	T	85617213	C	T	85617213	2	4	75	1	0	0	0	0	0	0	0	1	17367	680	24	4		4	WDFY3	4	85617213	Silent	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	17158148	85617213	105537063	17	5138										
NFKB1	0	genome.wustl.edu	37	chr4	103522129	103522129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	agtcacatctggtttgatttCtgatgacattatcaacatga	7	7	4	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	103522129	103522129	C	T	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	missense	c.1715	p.S572F	0.997	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	159	0	0	67	12	15.19	-	-	-	T	103522129	C	T	103522129	3	4	75	1	0	0	0	0	1	0	0	0	10447	913	32	2	1773	2	NFKB1	4	103522129	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	17904916	103522129	87632147	18	5139										
C4orf21	0	genome.wustl.edu	37	chr4	113468473	113468473	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tcgatcaaaaagagtttgttCcaatccattttcatgagctg	7	8	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	113468473	113468473	C	A	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	nonsense	c.5566	p.E1856*	1.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	104	0	0	35	7	16.28	-	-	-	A	113468473	C	A	113468473	4	1	75	1	0	0	0	0	0	1	0	0	2275	864	30	2	768	2	C4orf21	4	113468473	Nonsense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	9946344	113468473	77685803	19	5140										
CCNA2	0	genome.wustl.edu	37	chr4	122743651	122743651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	aaaagccagggcatcttcacGctctattttttgagattcag	8	9	4	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	122743651	122743651	G	A	SNP	CCNA2	ENST00000274026	human	ensembl	69_37n	-1	known	missense	c.364	p.R122C	0.000	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA2	HGNC	ENSG00000145386	242	0	0	72	11	13.25	-	-	-	A	122743651	G	A	122743651	3	1	75	1	0	0	0	0	1	0	0	0	2939	1087	38	1	962	1	CCNA2	4	122743651	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	9275178	122743651	68410625	20	5141										
RXFP1	0	genome.wustl.edu	37	chr4	159547979	159547979	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttttatgttccagggaccttGaaggcaaccatatccataat	7	9	0	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	4	159547979	159547979	G	A	SNP	RXFP1	ENST00000307765	human	ensembl	69_37n	1	known	missense	c.763	p.E255K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP1	HGNC	ENSG00000171509	308	0	0	181	39	17.73	-	-	-	A	159547979	G	A	159547979	3	1	75	1	0	0	0	0	1	0	0	0	13845	1291	45	2	801	2	RXFP1	4	159547979	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	36804328	159547979	31606297	21	5142										
PHF3	0	genome.wustl.edu	37	chr6	64356702	64356702	+	Splice_Site	DEL	T	T	-													0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cagatgccttgttcaacaggTaattcttacttttttttttt							TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	6	64356702	64356702	T	-	DEL	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	splice_site_del	c.244+2	e1+2	1.000	-	-	-	no_errors	PHF3	HGNC	ENSG00000118482	48	0	0	10	2	16.67	-	-	-	-	64356702	T	-	64356702	8	5	75	1	0	1	0	1	0	0	1	0	11910	1652	57	0	248	0	PHF3	6	64356702	Splice_Site	DEL	T	TCGA-A2-A0YH-01A-11D-A10G-09		64356702	106758365	22	5143										
COL12A1	0	genome.wustl.edu	37	chr6	75857512	75857512	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtgctagtttccattcgactCacataaaactagggggaaaa	9	8	1	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	6	75857512	75857512	C	G	SNP	COL12A1	ENST00000419671	human	ensembl	69_37n	-1	novel	missense	c.520	p.E174Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon	COL12A1	HGNC	ENSG00000111799	197	0	0	55	19	25.68	-	-	-	G	75857512	C	G	75857512	3	3	75	1	0	0	0	0	1	0	0	0	3699	813	29	2	5071	2	COL12A1	6	75857512	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	11500810	75857512	95257555	23	5144										
SENP6	0	genome.wustl.edu	37	chr6	76385620	76385620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttatattaaatacctctgatCtaactaaatgtgaatggtgt	6	5	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	6	76385620	76385620	C	G	SNP	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	missense	c.1471	p.L491V	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	127	0	0	70	15	17.65	-	-	-	G	76385620	C	G	76385620	3	3	75	1	0	0	0	0	1	0	0	0	14138	912	32	2	1521	2	SENP6	6	76385620	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	528108	76385620	94729447	24	5145										
SYNE1	0	genome.wustl.edu	37	chr6	152563452	152563452	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtctcctgccatcttctcctGaccagtttctagcaggtcag	8	14	5	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	6	152563452	152563452	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.19816	p.Q6606K	0.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	281	0	0	99	18	15.38	-	-	-	T	152563452	G	T	152563452	3	4	75	1	0	0	0	0	1	0	0	0	15537	1299	45	2	6810	2	SYNE1	6	152563452	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	76177832	152563452	18551615	25	5146										
COX19	0	genome.wustl.edu	37	chr7	966263	966263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctggctctcgcggcgtcgttCccgtgggaggccatgaactg	15	13	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	7	966263	966263	C	T	SNP	COX19	ENST00000457254	human	ensembl	69_37n	-1	known	missense	c.343	p.E115K	0.996	NULL	pfam_CHCH,superfamily_MTCP1	-	no_errors	COX19	HGNC	ENSG00000240230	113	0	0	15	5	25	-	-	-	T	966263	C	T	966263	3	4	75	1	0	0	0	0	1	0	0	0	3798	842	30	2		2	COX19	7	966263	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		966263	158172400	26	5147										
SEPT14	0	genome.wustl.edu	37	chr7	55910784	55910784	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttcttcttgaagataggcctCaaattgggcatctatgtagt	9	7	4	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	7	55910784	55910784	C	G	SNP	SEPT14	ENST00000388975	human	ensembl	69_37n	-1	known	missense	c.409	p.E137Q	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	170	0	0	75	14	15.73	-	-	-	G	55910784	C	G	55910784	3	3	75	1	0	0	0	0	1	0	0	0	14151	835	29	2	913	2	SEPT14	7	55910784	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	54944521	55910784	103227879	27	5148										
STAU2	0	genome.wustl.edu	37	chr8	74526082	74526082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtaagacggtggtcgcagcgCgcttcttggagagttttttg	15	7	1	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	8	74526082	74526082	C	T	SNP	STAU2	ENST00000524300	human	ensembl	69_37n	-1	known	missense	c.788	p.R263H	0.997	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU2	HGNC	ENSG00000040341	188	0	0	123	17	12.14	-	-	-	T	74526082	C	T	74526082	3	4	75	1	0	0	0	0	1	0	0	0	15364	768	27	1	1076	1	STAU2	8	74526082	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		74526082	71837940	28	5149										
ZFHX4	0	genome.wustl.edu	37	chr8	77616868	77616868	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gaagagtgatcagtctgcttCtgcacctatgtcgttctacc	9	11	4	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	8	77616868	77616868	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.545	p.S182F	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	95	0	0	69	11	13.75	-	-	-	T	77616868	C	T	77616868	3	4	75	1	0	0	0	0	1	0	0	0	17731	913	32	2	547	2	ZFHX4	8	77616868	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	3090786	77616868	68747154	29	5150										
ZFHX4	0	genome.wustl.edu	37	chr8	77776717	77776717	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cagaagctagaagacttagaTaattctttggaagtgaaggc	11	5	1	5			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	8	77776717	77776717	T	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.10767	p.D3589E	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	67	0	0	71	8	10.13	-	-	-	A	77776717	T	A	77776717	3	1	75	1	0	0	0	0	1	0	0	0	17731	1403	49	5	10805	5	ZFHX4	8	77776717	Missense_Mutation	SNP	T	TCGA-A2-A0YH-01A-11D-A10G-09	159849	77776717	68587305	30	5151										
MTSS1	0	genome.wustl.edu	37	chr8	125575147	125575147	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gagcctgctgggccaggttgGagctgcggtagcggtaatgt	18	8	0	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	8	125575147	125575147	G	C	SNP	MTSS1	ENST00000518547	human	ensembl	69_37n	-1	known	missense	c.911	p.S304C	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873	74	0	0	53	7	11.67	-	-	-	C	125575147	G	C	125575147	3	2	75	1	0	0	0	0	1	0	0	0	10034	1174	41	2	1376	2	MTSS1	8	125575147	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	47798430	125575147	20788875	31	5152										
KDM4C	0	genome.wustl.edu	37	chr9	6887970	6887970	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttctttttaggttttttcccAagcagctcccaagggtgtga	9	9	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	9	6887970	6887970	A	T	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	silent	c.690	p.P230	0.868	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	279	0	0	122	23	15.86	-	-	-	T	6887970	A	T	6887970	2	4	75	1	0	0	0	0	0	0	0	1	8184	117	5	5		5	KDM4C	9	6887970	Silent	SNP	A	TCGA-A2-A0YH-01A-11D-A10G-09		6887970	134325461	32	5153										
FAM75A2	0	genome.wustl.edu	37	chr9	39887042	39887042	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gagaggcctgcaggagacttCggacctgctttcacaactgc	12	12	1	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	9	39887042	39887042	C	A	SNP	FAM75A2	ENST00000456183	human	ensembl	69_37n	1	known	nonsense	c.284	p.S95*	0.000	NULL	NULL	-	no_errors	FAM75A2	HGNC	ENSG00000204848	392	0	0	55	10	15.38	-	-	-	A	39887042	C	A	39887042	4	1	75	1	0	0	0	0	0	1	0	0	5665	893	31	3	4354	3	FAM75A2	9	39887042	Nonsense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	32999072	39887042	101326389	33	5154										
DLG5	0	genome.wustl.edu	37	chr10	79595622	79595622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	acagagccttgcactgctttCgaaggatttcaacctccttg	8	12	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	10	79595622	79595622	C	T	SNP	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	missense	c.1496	p.R499Q	1.000	NULL	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	203	1	0.49	28	4	12.5	-	-	-	T	79595622	C	T	79595622	3	4	75	1	0	0	0	0	1	0	0	0	4594	884	31	1	4363	1	DLG5	10	79595622	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		79595622	55939125	34	5155										
BTAF1	0	genome.wustl.edu	37	chr10	93768685	93768685	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctttacagtccatctgcattCtagcaggagatcattgtcat	7	10	4	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	10	93768685	93768685	C	G	SNP	BTAF1	ENST00000265990	human	ensembl	69_37n	1	known	missense	c.3913	p.L1305V	1.000	pfam_SNF2_N,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564	134	0	0	55	15	21.43	-	-	-	G	93768685	C	G	93768685	3	3	75	1	0	0	0	0	1	0	0	0	1544	912	32	2	4019	2	BTAF1	10	93768685	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	14173063	93768685	41766062	35	5156										
ABCC2	0	genome.wustl.edu	37	chr10	101567986	101567986	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	atgatctcctccatgctccaGgtaggtcggcattctcactg	9	13	2	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	10	101567986	101567986	G	C	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.1815	p.Q605H	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	148	0	0	29	8	21.05	-	-	-	C	101567986	G	C	101567986	3	2	75	1	0	0	0	0	1	0	0	0	53	1014	35	4	1865	4	ABCC2	10	101567986	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	7799301	101567986	33966761	36	5157										
PLEKHA1	0	genome.wustl.edu	37	chr10	124189401	124189401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	aaaatggccctcaggaaaaaGattgtgacctagtagacttg	10	7	1	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	10	124189401	124189401	G	C	SNP	PLEKHA1	ENST00000368990	human	ensembl	69_37n	1	known	missense	c.1162	p.D388H	0.169	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679	91	0	0	16	8	33.33	-	-	-	C	124189401	G	C	124189401	3	2	75	1	0	0	0	0	1	0	0	0	12129	942	33	2	1204	2	PLEKHA1	10	124189401	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	22621415	124189401	11345346	37	5158										
OR5T2	0	genome.wustl.edu	37	chr11	56000599	56000599	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cagttcatattatgacaaaaAgaatgaacaacaccatgact	5	8	1	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	11	56000599	56000599	A	T	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	silent	c.63	p.S21	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	66	0	0	23	5	17.86	-	-	-	T	56000599	A	T	56000599	2	4	75	1	0	0	0	0	0	0	0	1	11255	59	3	5		5	OR5T2	11	56000599	Silent	SNP	A	TCGA-A2-A0YH-01A-11D-A10G-09		56000599	79005917	38	5159										
SORL1	0	genome.wustl.edu	37	chr11	121425982	121425982	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gctttggcttttgaacccctCagccagctgctttactgggt	10	12	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	11	121425982	121425982	C	T	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.2526	p.L842	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	205	0	0	47	9	16.07	-	-	-	T	121425982	C	T	121425982	2	4	75	1	0	0	0	0	0	0	0	1	15023	813	29	2		2	SORL1	11	121425982	Silent	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	65425383	121425982	13580534	39	5160										
GNB3	0	genome.wustl.edu	37	chr12	6952186	6952186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ccagatgcggacgcggcggaCgttaaggggacacctggcca	16	12	0	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	12	6952186	6952186	C	T	SNP	GNB3	ENST00000229264	human	ensembl	69_37n	1	known	missense	c.149	p.T50M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664	164	0	0	21	5	19.23	-	-	-	T	6952186	C	T	6952186	3	4	75	1	0	0	0	0	1	0	0	0	6571	536	19	1	159	1	GNB3	12	6952186	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		6952186	126899709	40	5161										
NR4A1	0	genome.wustl.edu	37	chr12	52451198	52451198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ggtgctacaccggctgcagtGtgcccgtggcttcggggact	16	12	0	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	12	52451198	52451198	G	A	SNP	NR4A1	ENST00000545748	human	ensembl	69_37n	1	known	missense	c.1586	p.C529Y	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	172	0	0	25	5	16.67	-	-	-	A	52451198	G	A	52451198	3	1	75	1	0	0	0	0	1	0	0	0	10705	1377	48	4	1442	4	NR4A1	12	52451198	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	45499012	52451198	81400697	41	5162										
SLITRK5	0	genome.wustl.edu	37	chr13	88329051	88329051	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	acctgaatggcaacaggatcGagaggctgagcccggagtta	14	9	0	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	13	88329051	88329051	G	C	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	missense	c.1408	p.E470Q	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	72	0	0	10	5	33.33	-	-	-	C	88329051	G	C	88329051	3	2	75	1	0	0	0	0	1	0	0	0	14835	1059	37	3	1410	3	SLITRK5	13	88329051	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		88329051	26840827	42	5163										
PSMA3	0	genome.wustl.edu	37	chr14	58724656	58724656	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	tccatagcatcttgcagacaGagtggccatgtatgtgcatg	11	9	1	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	14	58724656	58724656	G	C	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	1	known	missense	c.344	p.R115T	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567	225	0	0	61	12	16.44	-	-	-	C	58724656	G	C	58724656	3	2	75	1	0	0	0	0	1	0	0	0	12748	942	33	2	362	2	PSMA3	14	58724656	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		58724656	48624884	43	5164										
ATXN2L	0	genome.wustl.edu	37	chr16	28844517	28844517	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gggtctcccgtctcctccaaGacagagtccgtatcggataa	10	13	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	16	28844517	28844517	G	A	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	silent	c.1797	p.K599	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	77	0	0	32	5	13.51	-	-	-	A	28844517	G	A	28844517	2	1	75	1	0	0	0	0	0	0	0	1	1216	933	33	2		2	ATXN2L	16	28844517	Silent	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		28844517	61510236	44	5165										
TP53	0	genome.wustl.edu	37	chr17	7577105	7577105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctgtgcgccggtctctcccaGgacaggcacaaacacgcacc	10	17	1	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	17	7577105	7577105	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.833	p.P278L	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	171	0	0	19	16	45.71	-	-	-	A	7577105	G	A	7577105	3	1	75	1	0	0	0	0	1	0	0	0	16477	1000	35	4	453	4	TP53	17	7577105	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		7577105	73618105	45	5166										
TRPV2	0	genome.wustl.edu	37	chr17	16335539	16335539	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctcacctacatcctgctgctCaacatgctcatcgccctcat	4	18	4	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	17	16335539	16335539	C	G	SNP	TRPV2	ENST00000580788	human	ensembl	69_37n	1	putative	missense	c.160	p.Q54E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPV2	HGNC	ENSG00000187688	72	0	0	8	6	42.86	-	-	-	G	16335539	C	G	16335539	3	3	75	1	0	0	0	0	1	0	0	0	16692	813	29	2	1956	2	TRPV2	17	16335539	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	8758434	16335539	64859671	46	5167										
SUZ12	0	genome.wustl.edu	37	chr17	30315462	30315462	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ctcttgccactagaaattcaGagagtctccatcaggaaaac	7	11	4	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	17	30315462	30315462	G	A	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.1147	p.E383K	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	148	0	0	56	14	20	-	-	-	A	30315462	G	A	30315462	3	1	75	1	0	0	0	0	1	0	0	0	15507	943	33	2	1185	2	SUZ12	17	30315462	Missense_Mutation	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	13979923	30315462	50879748	47	5168										
ZNF532	0	genome.wustl.edu	37	chr18	56587811	56587811	+	Frame_Shift_Del	DEL	G	G	-													0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gagtgtaatgaagtcttccaGgacgagacatcactggctac							TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	18	56587811	56587811	G	-	DEL	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	frame_shift_del	c.2292	p.D765fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	53	0	0	12	2	14.29	-	-	-	-	56587811	G	-	56587811	7	5	75	1	0	1	0	1	0	0	0	0	18068	991	35	0	2294	0	ZNF532	18	56587811	Frame_Shift_Del	DEL	G	TCGA-A2-A0YH-01A-11D-A10G-09		56587811	21489437	48	5169										
DOT1L	0	genome.wustl.edu	37	chr19	2211749	2211749	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gtgttccgcctctcttcccaGagtccttcaagatccagtac	7	15	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	19	2211749	2211749	G	T	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	splice_site	c.1466-1	e16-1	1.000	-	-	-	no_errors	DOT1L	HGNC	ENSG00000104885	153	0	0	6	13	68.42	-	-	-	T	2211749	G	T	2211749	5	4	75	1	0	0	0	0	0	0	1	0	4744	956	33	2	1527	2	DOT1L	19	2211749	Splice_Site	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09		2211749	56917234	49	5170										
PSG1	0	genome.wustl.edu	37	chr19	43376163	43376163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	atggtctccctgggatttaaGttgctgctggagatggaggg	16	6	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	19	43376163	43376163	G	A	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	silent	c.465	p.N155	0.011	pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	262	0	0	51	35	40.7	-	-	-	A	43376163	G	A	43376163	2	1	75	1	0	0	0	0	0	0	0	1	12733	1020	36	4		4	PSG1	19	43376163	Silent	SNP	G	TCGA-A2-A0YH-01A-11D-A10G-09	41164414	43376163	15752820	50	5171										
CDC25B	0	genome.wustl.edu	37	chr20	3783790	3783790	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	acgggcaagttcagcaacatCgtggataagtttgtgattgt	12	6	1	1			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	20	3783790	3783790	C	G	SNP	CDC25B	ENST00000245960	human	ensembl	69_37n	1	known	missense	c.1293	p.I431M	0.992	superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224	113	1	0.88	27	13	32.5	-	-	-	G	3783790	C	G	3783790	3	3	75	1	0	0	0	0	1	0	0	0	3092	874	31	3	1343	3	CDC25B	20	3783790	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		3783790	59241730	51	5172										
PYGB	0	genome.wustl.edu	37	chr20	25257355	25257355	+	Frame_Shift_Del	DEL	G	G	-													0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cgtcaacaccatgcggctgtGgtccgccaaggctcccaacg							TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	20	25257355	25257355	G	-	DEL	PYGB	ENST00000216962	human	ensembl	69_37n	1	known	frame_shift_del	c.734	p.W245fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	66	0	0	12	2	14.29	-	-	-	-	25257355	G	-	25257355	7	5	75	1	0	1	0	1	0	0	0	0	12943	1357	47	0	756	0	PYGB	20	25257355	Frame_Shift_Del	DEL	G	TCGA-A2-A0YH-01A-11D-A10G-09	21473565	25257355	37768165	52	5173										
USP25	0	genome.wustl.edu	37	chr21	17177479	17177479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ttatgcgtgagctgaggtatCtatttgcacttcttgttggt	11	6	2	2			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	21	17177479	17177479	C	G	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.682	p.L228V	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	219	0	0	71	17	19.32	-	-	-	G	17177479	C	G	17177479	3	3	75	1	0	0	0	0	1	0	0	0	17153	912	32	2	708	2	USP25	21	17177479	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		17177479	30952416	53	5174										
CLTCL1	0	genome.wustl.edu	37	chr22	19220950	19220950	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	cacaagtgtttctaccttatCttctttcagccacttctcta	3	13	5	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	22	19220950	19220950	C	A	SNP	CLTCL1	ENST00000263200	human	ensembl	69_37n	-1	known	missense	c.1363	p.D455Y	1.000	superfamily_ARM-type_fold,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	86	0	0	35	5	12.5	-	-	-	A	19220950	C	A	19220950	3	1	75	1	0	0	0	0	1	0	0	0	3597	913	32	2	3659	2	CLTCL1	22	19220950	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		19220950	32083616	54	5175										
RTN4R	0	genome.wustl.edu	37	chr22	20230142	20230142	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	gcccaggtcgcggaaggtgtCatcaggcagtgcctgcagcg	16	12	2	0			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	22	20230142	20230142	C	T	SNP	RTN4R	ENST00000043402	human	ensembl	69_37n	-1	known	missense	c.514	p.D172N	0.952	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608	26	0	0	7	4	36.36	-	-	-	T	20230142	C	T	20230142	3	4	75	1	0	0	0	0	1	0	0	0	13816	826	29	2	911	2	RTN4R	22	20230142	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	1009192	20230142	31074424	55	5176										
TBC1D8B	0	genome.wustl.edu	37	chrX	106066621	106066621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	ggaacagctggcaaactatgCcattagaagactttttgata	9	7	0	3			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	X	106066621	106066621	C	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.752	p.A251V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	143	0	0	77	13	14.44	-	-	-	T	106066621	C	T	106066621	3	4	75	1	0	0	0	0	1	0	0	0	15721	739	26	4	770	4	TBC1D8B	23	106066621	Missense_Mutation	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09		106066621	49203939	56	5177										
FLNA	0	genome.wustl.edu	37	chrX	153580297	153580297	+	Frame_Shift_Del	DEL	G	G	-													0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	accacaggagccgtccttgcGgtcctcaaaagagatctcag							TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	X	153580297	153580297	G	-	DEL	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	frame_shift_del	c.6862	p.R2288fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	104	0	0	17	2	10.53	-	-	-	-	153580297	G	-	153580297	7	5	75	1	0	1	0	1	0	0	0	0	5979	1116	39	0	1109	0	FLNA	23	153580297	Frame_Shift_Del	DEL	G	TCGA-A2-A0YH-01A-11D-A10G-09	47513676	153580297	1690263	57	5178										
VAMP7	0	genome.wustl.edu	37	chrX	155130211	155130211	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.362068965517241	21	3.51810582667858e-05	2.79781420765027	3.7304189435337	2.27970046549282	1	1	13	aaagtgatggagactcaagcCcaagtggatgaactgaaagg	13	6	1	4			TCGA-A2-A0YH-01A-11D-A10G-09	TCGA-A2-A0YH-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5558a39-eab2-4216-ba88-b63c2de48b01	b5036146-9005-41b6-ad70-1906a7c6c8c7	X	155130211	155130211	C	T	SNP	VAMP7	ENST00000262640	human	ensembl	69_37n	1	known	silent	c.393	p.A131	1.000	NULL	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	VAMP7	HGNC	ENSG00000124333	237	0	0	72	10	12.2	-	-	-	T	155130211	C	T	155130211	2	4	75	1	0	0	0	0	0	0	0	1	17214	610	22	4		4	VAMP7	23	155130211	Silent	SNP	C	TCGA-A2-A0YH-01A-11D-A10G-09	1549914	155130211	140349	58	5179										
SPEN	0	genome.wustl.edu	37	chr1	16258660	16258661	+	Frame_Shift_Del	DEL	CA	CA	-													0	0	1	0	0	0	1	1	0	aaggaacctgcagaaacactCaagccacctgagggatggcg							TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	1	16258660	16258661	CA	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.5925_5926	p.K1976fs	0.124:0.296	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	13	0	0	6	3	33.33	-	-	-	-	16258661	CA	-	16258660	7	5	76	1	0	1	0	1	0	0	0	0	15129	813	29	0	5967	0	SPEN	1	16258660	Frame_Shift_Del	DEL	CA	TCGA-A2-A0YI-01A-31D-A10M-09		16258660	232991961	1	5180										
POTEE	0	genome.wustl.edu	37	chr2	132022031	132022031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accaacacagtgctgtctggCggcaccaccatgtaccctgg	10	15	1	0			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	8	0	0	8	8	50	-	-	-	T	132022031	C	T	132022031	2	4	76	1	0	0	0	0	0	0	0	1	12338	755	27	1		1	POTEE	2	132022031	Silent	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09		132022031	111177342	2	5181										
SCN9A	0	genome.wustl.edu	37	chr2	167099093	167099093	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	acaatcttgtagcaggttttCctgatgttccaccagatttt	7	9	1	2			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	2	167099093	167099093	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.3549	p.R1183	0.995	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	149	0	0	135	27	16.67	-	-	-	T	167099093	C	T	167099093	2	4	76	1	0	0	0	0	0	0	0	1	14013	854	30	2		2	SCN9A	2	167099093	Silent	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09	35077062	167099093	76100280	3	5182										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0	39	10	20.41	-	-	-	A	178921553	T	A	178921553	3	1	76	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-A2-A0YI-01A-31D-A10M-09		178921553	19100877	4	5183										
RASGEF1C	0	genome.wustl.edu	37	chr5	179564989	179564989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ctgttcgccatctgtgggctCggtggggggtgggctgaggc	20	9	1	1			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	5	179564989	179564989	C	T	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.64	p.E22K	0.454	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	64	0	0	36	21	36.21	-	-	-	T	179564989	C	T	179564989	3	4	76	1	0	0	0	0	1	0	0	0	13154	893	31	1	1388	1	RASGEF1C	5	179564989	Missense_Mutation	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09		179564989	1350271	5	5184										
THSD7A	0	genome.wustl.edu	37	chr7	11509516	11509516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaccataccttctttacaCgaagaggggcatgatgtcca	9	11	1	3			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	7	11509516	11509516	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.2358	p.S786	0.006	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	70	0	0	52	12	18.75	-	-	-	T	11509516	C	T	11509516	2	4	76	1	0	0	0	0	0	0	0	1	15974	523	19	1		1	THSD7A	7	11509516	Silent	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09		11509516	147629147	6	5185										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123210362	123210362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atacatatttcctaatgaccGggatggttttattaggattg	9	5	0	1			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	9	123210362	123210362	G	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.2836	p.R946W	0.008	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	156	0	0	139	22	13.66	-	-	-	A	123210362	G	A	123210362	3	1	76	1	0	0	0	0	1	0	0	0	3175	1115	39	1	2913	1	CDK5RAP2	9	123210362	Missense_Mutation	SNP	G	TCGA-A2-A0YI-01A-31D-A10M-09		123210362	18003069	7	5186										
CTAGE5	0	genome.wustl.edu	37	chr14	39788473	39788473	+	Silent	SNP	T	T	A													0	0	1	0	0	0	1	1	0	gatccttatgcactcgatgtTccaaatacagcatttggcag							TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	14	39788473	39788473	T	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.1536	p.V512	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	114	0	0	101	32	24.06	-	-	-	A	39788473	T	A	39788473	2	1	76	1	0	0	0	0	0	0	0	1	4026	1770	62	5		5	CTAGE5	14	39788473	Silent	SNP	T	TCGA-A2-A0YI-01A-31D-A10M-09		39788473	67561067	8	5187	41	2								
CTAGE5	0	genome.wustl.edu	37	chr14	39788474	39788474	+	Missense_Mutation	SNP	C	C	A													0	0	1	0	0	0	1	1	0	atccttatgcactcgatgttCcaaatacagcatttggcaga							TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	14	39788474	39788474	C	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	missense	c.1537	p.P513T	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	114	0	0	99	33	25	-	-	-	A	39788474	C	A	39788474	3	1	76	1	0	0	0	0	1	0	0	0	4026	855	30	2	1623	2	CTAGE5	14	39788474	Missense_Mutation	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09	1	39788474	67561066	9	5188	41	2								
MAP2K5	0	genome.wustl.edu	37	chr15	67873162	67873162	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgcagatatttccaagagGtaatgttgagcaaattctaa	8	6	2	3			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	15	67873162	67873162	G	C	SNP	MAP2K5	ENST00000178640	human	ensembl	69_37n	1	known	splice_site	c.322+1	e4+1	1.000	-	-	-	no_errors	MAP2K5	HGNC	ENSG00000137764	169	0	0	137	41	23.03	-	-	-	C	67873162	G	C	67873162	5	2	76	1	0	0	0	0	0	0	1	0	9311	1275	44	4	337	4	MAP2K5	15	67873162	Splice_Site	SNP	G	TCGA-A2-A0YI-01A-31D-A10M-09		67873162	34658230	10	5189										
MEFV	0	genome.wustl.edu	37	chr16	3306365	3306365	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggcgctggttgatggcccGcaggacctgcagggtgagct	17	11	0	2			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	16	3306365	3306365	G	T	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	silent	c.223	p.R75	0.351	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	26	0	0	17	6	26.09	-	-	-	T	3306365	G	T	3306365	2	4	76	1	0	0	0	0	0	0	0	1	9530	1086	38	3		3	MEFV	16	3306365	Silent	SNP	G	TCGA-A2-A0YI-01A-31D-A10M-09		3306365	87048388	11	5190										
SIPA1L3	0	genome.wustl.edu	37	chr19	38655323	38655323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gcatgtccctggccaaggctCcacggcccgccaagccacac	10	19	0	0			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	19	38655323	38655323	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.3985	p.P1329S	0.016	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	38	0	0	32	5	13.51	-	-	-	T	38655323	C	T	38655323	3	4	76	1	0	0	0	0	1	0	0	0	14420	855	30	2	4035	2	SIPA1L3	19	38655323	Missense_Mutation	SNP	C	TCGA-A2-A0YI-01A-31D-A10M-09		38655323	20473660	12	5191										
ZNFX1	0	genome.wustl.edu	37	chr20	47881273	47881273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actcatgtaggcccttcggaGgtgcatggggaggttgcggc	17	9	1	0			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	20	47881273	47881273	G	T	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	missense	c.2131	p.L711I	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	162	0	0	118	27	18.62	-	-	-	T	47881273	G	T	47881273	3	4	76	1	0	0	0	0	1	0	0	0	18298	1000	35	4	3665	4	ZNFX1	20	47881273	Missense_Mutation	SNP	G	TCGA-A2-A0YI-01A-31D-A10M-09		47881273	15144247	13	5192										
TRPC5	0	genome.wustl.edu	37	chrX	111155993	111155993	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccagcatgatgggagtgatGtccggtgtgaattcagagaa	15	6	1	4			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	X	111155993	111155993	G	T	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.426	p.D142E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	136	0	0	96	28	22.58	-	-	-	T	111155993	G	T	111155993	3	4	76	1	0	0	0	0	1	0	0	0	16678	1368	48	4	2531	4	TRPC5	23	111155993	Missense_Mutation	SNP	G	TCGA-A2-A0YI-01A-31D-A10M-09		111155993	44114567	14	5193										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17958870	17958870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gtgagacgttgacggagaccGtgtacggtgaccgcgggcag	18	9	0	4			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	1	17958870	17958870	G	T	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	missense	c.1639	p.V547L	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	8	0	0	37	12	24	-	-	-	T	17958870	G	T	17958870	3	4	77	1	0	0	0	0	1	0	0	0	897	1145	40	3	1697	3	ARHGEF10L	1	17958870	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		17958870	231291751	1	5194										
CELSR2	0	genome.wustl.edu	37	chr1	109794101	109794101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ccctcttgactatgagacgaCcaaggagtacaccctacggg	10	13	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	1	109794101	109794101	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.1400	p.T467I	0.126	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	12	0	0	25	5	16.67	-	-	-	T	109794101	C	T	109794101	3	4	77	1	0	0	0	0	1	0	0	0	3251	507	18	4	1402	4	CELSR2	1	109794101	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	91835231	109794101	139456520	2	5195										
TCHHL1	0	genome.wustl.edu	37	chr1	152058008	152058008	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gactttctaacagagtattcTgggcctctgttgctcttcct	8	11	4	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	1	152058008	152058008	T	A	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.2150	p.Q717L	0.025	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	127	0	0	378	62	14.06	-	-	-	A	152058008	T	A	152058008	3	1	77	1	0	0	0	0	1	0	0	0	15796	1580	55	5	568	5	TCHHL1	1	152058008	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09	42263907	152058008	97192613	3	5196										
NDUFS2	0	genome.wustl.edu	37	chr1	161183954	161183954	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	cctctcacctaggtacccaaGatattgtatttggagaagta	8	9	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	1	161183954	161183954	G	A	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.1363	p.D455N	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	46	0	0	184	28	13.21	-	-	-	A	161183954	G	A	161183954	3	1	77	1	0	0	0	0	1	0	0	0	10364	942	33	2	1437	2	NDUFS2	1	161183954	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	9125946	161183954	88066667	4	5197										
RDH14	0	genome.wustl.edu	37	chr2	18736890	18736890	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tgtctccgtatttataaagtTtggaagaaactaccacaatc	6	8	1	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	2	18736890	18736890	T	C	SNP	RDH14	ENST00000381249	human	ensembl	69_37n	-1	known	missense	c.578	p.K193R	1.000	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH14	HGNC	ENSG00000240857	50	0	0	94	13	12.15	-	-	-	C	18736890	T	C	18736890	3	2	77	1	0	0	0	0	1	0	0	0	13276	1841	64	5	436	5	RDH14	2	18736890	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09		18736890	224462483	5	5198										
CCDC141	0	genome.wustl.edu	37	chr2	179702153	179702153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ggcaacaggtggtggaagaaCagattcctgggcatcccctg	14	10	0	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	2	179702153	179702153	C	G	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	missense	c.3793	p.V1265L	0.179	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	24	0	0	79	16	16.84	-	-	-	G	179702153	C	G	179702153	3	3	77	1	0	0	0	0	1	0	0	0	2800	478	17	4	563	4	CCDC141	2	179702153	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	160965263	179702153	63497220	6	5199										
CCR2	0	genome.wustl.edu	37	chr3	46399864	46399864	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	aactgtgaaagcaccagtcaActggaccaagccacgcaggt	10	12	1	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	3	46399864	46399864	A	T	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	1	known	missense	c.846	p.Q282H	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	37	0	0	120	21	14.89	-	-	-	T	46399864	A	T	46399864	3	4	77	1	0	0	0	0	1	0	0	0	2970	40	2	5	848	5	CCR2	3	46399864	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09		46399864	151622566	7	5200										
HYAL2	0	genome.wustl.edu	37	chr3	50357070	50357070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	agactgggagtgcatggttgGcatggtgggtgcgagccaca	18	7	0	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	3	50357070	50357070	G	C	SNP	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	missense	c.851	p.A284G	0.490	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	20	0	0	43	12	21.82	-	-	-	C	50357070	G	C	50357070	3	2	77	1	0	0	0	0	1	0	0	0	7518	1203	42	4	582	4	HYAL2	3	50357070	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	3957206	50357070	147665360	8	5201										
COL6A6	0	genome.wustl.edu	37	chr3	130327755	130327755	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tctcgccacagggaacagcaGgcatcccaggaccagatgga	12	13	1	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	3	130327755	130327755	G	C	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.4699	p.G1567R	0.545	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	39	0	0	74	12	13.95	-	-	-	C	130327755	G	C	130327755	3	2	77	1	0	0	0	0	1	0	0	0	3733	1000	35	4	4781	4	COL6A6	3	130327755	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	79970685	130327755	67694675	9	5202										
MECOM	0	genome.wustl.edu	37	chr3	168833597	168833597	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	acatggaagggtaaggtaaaGctccaacttttttgtcttgc	10	7	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	3	168833597	168833597	G	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.2063	p.A688D	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	240	0	0	490	94	16.1	-	-	-	T	168833597	G	T	168833597	3	4	77	1	0	0	0	0	1	0	0	0	9493	971	34	4	1696	4	MECOM	3	168833597	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	38505842	168833597	29188833	10	5203										
SNX25	0	genome.wustl.edu	37	chr4	186180136	186180136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tgcaccacagactgagtcacGtggatgtggttaaagttgtc	12	8	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	4	186180136	186180136	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	missense	c.157	p.V53M	0.998	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	55	0	0	76	20	20.83	-	-	-	A	186180136	G	A	186180136	3	1	77	1	0	0	0	0	1	0	0	0	14985	1145	40	1	163	1	SNX25	4	186180136	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		186180136	4974140	11	5204										
PARP8	0	genome.wustl.edu	37	chr5	50091197	50091197	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ggcaggaggctctctcttacCtcagggcttattggtatcct	11	11	3	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	5	50091197	50091197	C	A	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	silent	c.1374	p.T458	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	32	0	0	22	13	37.14	-	-	-	A	50091197	C	A	50091197	2	1	77	1	0	0	0	0	0	0	0	1	11538	668	24	4		4	PARP8	5	50091197	Silent	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		50091197	130824063	12	5205										
HIST1H2AD	0	genome.wustl.edu	37	chr6	26199312	26199312	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ggtcaggtactccaacaccgCcgccagatacactggcgcgc	11	16	1	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	6	26199312	26199312	C	A	SNP	HIST1H2AD	ENST00000341023	human	ensembl	69_37n	-1	known	missense	c.160	p.A54S	0.999	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866	20	0	0	91	14	13.08	-	-	-	A	26199312	C	A	26199312	3	1	77	1	0	0	0	0	1	0	0	0	7182	739	26	4	236	4	HIST1H2AD	6	26199312	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		26199312	144915755	13	5206										
GPR110	0	genome.wustl.edu	37	chr6	46977783	46977783	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ggtctgacccaattaacacaCggcctctgatgggaatagat	10	10	2	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	6	46977783	46977783	C	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.1388	p.R463L	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	45	0	0	135	26	16.15	-	-	-	A	46977783	C	A	46977783	3	1	77	1	0	0	0	0	1	0	0	0	6677	536	19	3	1364	3	GPR110	6	46977783	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	20778471	46977783	124137284	14	5207										
SNAP91	0	genome.wustl.edu	37	chr6	84366485	84366485	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ccacctaccgagtaagttaaTaacaccatcattgtagcaag	6	11	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	6	84366485	84366485	T	C	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.646	p.I216V	1.000	pfam_ANTH	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	67	0	0	164	26	13.68	-	-	-	C	84366485	T	C	84366485	3	2	77	1	0	0	0	0	1	0	0	0	14922	1406	49	5	2165	5	SNAP91	6	84366485	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09	37388702	84366485	86748582	15	5208										
FAM184A	0	genome.wustl.edu	37	chr6	119301436	119301436	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	taagccgctgtcgttcttgcGtaaactgggcttgcagttgt	12	9	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	6	119301436	119301436	G	C	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	missense	c.2168	p.T723R	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	55	0	0	216	44	16.92	-	-	-	C	119301436	G	C	119301436	3	2	77	1	0	0	0	0	1	0	0	0	5552	1145	40	3	1290	3	FAM184A	6	119301436	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	34934951	119301436	51813631	16	5209										
MAGI2	0	genome.wustl.edu	37	chr7	77762343	77762343	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tgcgccatgggactctgcttCtctgagctgggtgccgaggt	15	11	2	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	7	77762343	77762343	C	G	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.3066	p.E1022D	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	51	0	0	186	22	10.58	-	-	-	G	77762343	C	G	77762343	3	3	77	1	0	0	0	0	1	0	0	0	9262	912	32	2	1321	2	MAGI2	7	77762343	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		77762343	81376320	17	5210										
PPP1R9A	0	genome.wustl.edu	37	chr7	94750069	94750069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tattggaatgggtgttggagCagatgctggacttgaaaagc	15	4	0	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	7	94750069	94750069	C	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	missense	c.1574	p.A525V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	72	0	0	234	30	11.36	-	-	-	T	94750069	C	T	94750069	3	4	77	1	0	0	0	0	1	0	0	0	12455	710	25	4	1584	4	PPP1R9A	7	94750069	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	16987726	94750069	64388594	18	5211										
ABCF2	0	genome.wustl.edu	37	chr7	150916218	150916219	+	Frame_Shift_Ins	INS	-	-	C													0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ttctcctccagctctagccgINScgtcttcacgtactgatcat							TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	7	150916218	150916219	-	C	INS	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.949_948	p.R316fs	0.995:0.690	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	43	0	0	144	21	12.73	-	-	-	C	150916219	-	C	150916218	7	5	77	1	0	1	1	0	0	0	0	0	66	1086	38	0	995	0	ABCF2	7	150916218	Frame_Shift_Ins	INS	-	TCGA-A2-A0YJ-01A-11D-A10G-09	56166149	150916218	8222445	19	5212										
RBM33	0	genome.wustl.edu	37	chr7	155537935	155537935	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	cagacaaaatgtgaagaacaGacttcttgttaaaaaccagg	8	7	1	4			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	7	155537935	155537935	G	T	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.2618	p.R873I	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	24	0	0	61	12	16.44	-	-	-	T	155537935	G	T	155537935	3	4	77	1	0	0	0	0	1	0	0	0	13213	942	33	2	2672	2	RBM33	7	155537935	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	4621717	155537935	3600728	20	5213										
TAF1L	0	genome.wustl.edu	37	chr9	32634818	32634818	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gcgtaacacttttccaggtcGaaattctggaaaaagttcgg	10	8	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	9	32634818	32634818	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	nonsense	c.760	p.R254*	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	70	0	0	139	77	35.65	-	-	-	A	32634818	G	A	32634818	4	1	77	1	0	0	0	0	0	1	0	0	15615	1066	37	1	4724	1	TAF1L	9	32634818	Nonsense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		32634818	108578613	21	5214										
PTCHD3	0	genome.wustl.edu	37	chr10	27687828	27687828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gacagaaccaaatgggaaacAgcagaactttttaaatgagg	10	6	0	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	10	27687828	27687828	A	C	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	missense	c.1699	p.C567G	0.998	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	55	0	0	198	24	10.81	-	-	-	C	27687828	A	C	27687828	3	2	77	1	0	0	0	0	1	0	0	0	12814	188	7	5	608	5	PTCHD3	10	27687828	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09		27687828	107846919	22	5215										
RRP12	0	genome.wustl.edu	37	chr10	99133604	99133604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tacctgccactggagtgtgtCgtagatcttagattccactg	10	10	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	10	99133604	99133604	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	missense	c.1846	p.D616N	1.000	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	38	0	0	62	7	10.14	-	-	-	T	99133604	C	T	99133604	3	4	77	1	0	0	0	0	1	0	0	0	13772	884	31	1	2123	1	RRP12	10	99133604	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	71445776	99133604	36401143	23	5216										
OR52N2	0	genome.wustl.edu	37	chr11	5842404	5842404	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ccacatacacatcatcgtggCcaacctttatctgctactgc	5	15	2	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	11	5842404	5842404	C	G	SNP	OR52N2	ENST00000317037	human	ensembl	69_37n	1	known	missense	c.839	p.A280G	0.755	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988	68	0	0	123	30	19.61	-	-	-	G	5842404	C	G	5842404	3	3	77	1	0	0	0	0	1	0	0	0	11201	739	26	4	841	4	OR52N2	11	5842404	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		5842404	129164112	24	5217										
NARS2	0	genome.wustl.edu	37	chr11	78154716	78154716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ctgaccagtacctggctaagCgctcctctaagaaatggtat	9	11	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	11	78154716	78154716	C	T	SNP	NARS2	ENST00000281038	human	ensembl	69_37n	-1	known	missense	c.1253	p.R418H	0.423	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS2	HGNC	ENSG00000137513	44	0	0	147	21	12.5	-	-	-	T	78154716	C	T	78154716	3	4	77	1	0	0	0	0	1	0	0	0	10243	768	27	1	192	1	NARS2	11	78154716	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	72312312	78154716	56851800	25	5218										
DSCAML1	0	genome.wustl.edu	37	chr11	117376409	117376409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gtagagcagctggccgatggAggcgggtgggaattcgaagg	20	6	0	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	11	117376409	117376409	A	G	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.2002	p.S668P	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	19	0	0	73	21	22.11	-	-	-	G	117376409	A	G	117376409	3	3	77	1	0	0	0	0	1	0	0	0	4804	304	11	5	4439	5	DSCAML1	11	117376409	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09	39221693	117376409	17630107	26	5219										
MLL	0	genome.wustl.edu	37	chr11	118375750	118375750	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tgttcccatccagaaccagaAgtatgtgcccaattctactg	7	12	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	11	118375750	118375750	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.9134	p.K3045T	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	31	0	0	78	12	13.33	-	-	-	C	118375750	A	C	118375750	3	2	77	1	0	0	0	0	1	0	0	0	9691	72	3	5	9240	5	MLL	11	118375750	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09	999341	118375750	16630766	27	5220										
LRRK2	0	genome.wustl.edu	37	chr12	40745469	40745469	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	aatgcaagcatttggctgggCtgtgggcacaccgacagagg	15	9	0	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	12	40745469	40745469	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	silent	c.6510	p.G2170	0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	31	0	0	83	19	18.63	-	-	-	T	40745469	C	T	40745469	2	4	77	1	0	0	0	0	0	0	0	1	9099	784	28	4		4	LRRK2	12	40745469	Silent	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		40745469	93106426	28	5221										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100451829	100451829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	taaagatgactgtgatttaaGtgttctaactgggggggtct	13	4	2	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	12	100451829	100451829	G	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.3226	p.L1076V	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	55	0	0	48	10	17.24	-	-	-	C	100451829	G	C	100451829	3	2	77	1	0	0	0	0	1	0	0	0	17066	1029	36	4	1200	4	UHRF1BP1L	12	100451829	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	59706360	100451829	33400066	29	5222										
TCTN2	0	genome.wustl.edu	37	chr12	124191572	124191572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	agtatgactgcaacagaaatGaggtgtgttggccgcagctt	13	7	0	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	12	124191572	124191572	G	A	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	missense	c.1936	p.E646K	1.000	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	94	0	0	217	31	12.5	-	-	-	A	124191572	G	A	124191572	3	1	77	1	0	0	0	0	1	0	0	0	15818	1291	45	2	2002	2	TCTN2	12	124191572	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	23739743	124191572	9660323	30	5223										
FAM155A	0	genome.wustl.edu	37	chr13	108518036	108518036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ccgagggttcctaccttacaGtcttcaggacaggatttcac	9	12	3	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	13	108518036	108518036	G	T	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	missense	c.909	p.D303E	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	30	0	0	85	13	13.27	-	-	-	T	108518036	G	T	108518036	3	4	77	1	0	0	0	0	1	0	0	0	5505	1020	36	4	479	4	FAM155A	13	108518036	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		108518036	6651842	31	5224										
HEATR5A	0	genome.wustl.edu	37	chr14	31763097	31763097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	aatttagtgctgacacttacGatggtgttcttcagcaacag	9	8	2	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	14	31763097	31763097	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.5815	p.R1939C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	78	0	0	129	30	18.87	-	-	-	A	31763097	G	A	31763097	3	1	77	1	0	0	0	0	1	0	0	0	7082	1072	37	1	315	1	HEATR5A	14	31763097	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		31763097	75586443	32	5225										
HSPA2	0	genome.wustl.edu	37	chr14	65007620	65007620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	cctgggcaccacctattcgtGcgtcggggtcttccaacatg	11	14	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	14	65007620	65007620	G	A	SNP	HSPA2	ENST00000247207	human	ensembl	69_37n	1	known	missense	c.53	p.C18Y	1.000	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	13	0	0	37	9	19.57	-	-	-	A	65007620	G	A	65007620	3	1	77	1	0	0	0	0	1	0	0	0	7464	1319	46	4	55	4	HSPA2	14	65007620	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	33244523	65007620	42341920	33	5226										
VASH1	0	genome.wustl.edu	37	chr14	77244414	77244414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gaacagccgcagtgaaagacGgtgagagagggaccacgcct	15	10	0	4			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	14	77244414	77244414	G	T	SNP	VASH1	ENST00000167106	human	ensembl	69_37n	1	known	missense	c.1025	p.R342L	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246	17	0	0	26	12	31.58	-	-	-	T	77244414	G	T	77244414	3	4	77	1	0	0	0	0	1	0	0	0	17222	1130	39	3	1047	3	VASH1	14	77244414	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	12236794	77244414	30105126	34	5227										
DYNC1H1	0	genome.wustl.edu	37	chr14	102514950	102514950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	agatgtcgtccaggtgtgcgAaggaaagaagaagcagacca	14	7	0	4			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	14	102514950	102514950	A	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.13316	p.E4439G	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	18	0	0	69	12	14.81	-	-	-	G	102514950	A	G	102514950	3	3	77	1	0	0	0	0	1	0	0	0	4876	246	9	5	13610	5	DYNC1H1	14	102514950	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09	25270536	102514950	4834590	35	5228										
SHPK	0	genome.wustl.edu	37	chr17	3524661	3524661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	cccgccacactgccaggctcGgcgatgtctgggagcaggtg	15	14	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	17	3524661	3524661	G	A	SNP	SHPK	ENST00000225519	human	ensembl	69_37n	-1	known	silent	c.693	p.A231	0.000	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_N	-	no_errors	SHPK	HGNC	ENSG00000197417	13	0	0	5	33	86.84	-	-	-	A	3524661	G	A	3524661	2	1	77	1	0	0	0	0	0	0	0	1	14379	1103	39	1		1	SHPK	17	3524661	Silent	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		3524661	77670549	36	5229										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	10	0	0	19	31	62	-	-	-	A	7574003	G	A	7574003	4	1	77	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	4049342	7574003	73621207	37	5230										
ARHGEF15	0	genome.wustl.edu	37	chr17	8219162	8219162	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tgcccacgctgtggggccttTctcggtgtatgtggattatg	14	9	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	17	8219162	8219162	T	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.1511	p.F504Y	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	37	0	0	146	20	12.05	-	-	-	A	8219162	T	A	8219162	3	1	77	1	0	0	0	0	1	0	0	0	900	1783	62	5	1537	5	ARHGEF15	17	8219162	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09	645159	8219162	72976048	38	5231										
UNC119	0	genome.wustl.edu	37	chr17	26875691	26875691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	aaacctgacaaagtcgatctTgtagatattctcctcagggg	9	9	3	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	17	26875691	26875691	T	C	SNP	UNC119	ENST00000335765	human	ensembl	69_37n	-1	known	missense	c.253	p.K85E	1.000	pfam_GMP_PDE_delta,superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119	HGNC	ENSG00000109103	33	0	0	29	50	63.29	-	-	-	C	26875691	T	C	26875691	3	2	77	1	0	0	0	0	1	0	0	0	17079	1821	63	5	538	5	UNC119	17	26875691	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09	18656529	26875691	54319519	39	5232										
SUZ12	0	genome.wustl.edu	37	chr17	30267315	30267315	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tattacctagagccaacacaGatctatagatttcttcgaac	5	10	2	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	17	30267315	30267315	G	C	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.285	p.Q95H	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	111	0	0	123	17	12.14	-	-	-	C	30267315	G	C	30267315	3	2	77	1	0	0	0	0	1	0	0	0	15507	933	33	2	291	2	SUZ12	17	30267315	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	3391624	30267315	50927895	40	5233										
APCDD1	0	genome.wustl.edu	37	chr18	10471922	10471922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gcatgaacttcagctcatccGggtggagaagcagtaccttc	11	11	2	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	18	10471922	10471922	G	A	SNP	APCDD1	ENST00000355285	human	ensembl	69_37n	1	known	missense	c.638	p.R213Q	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	9	0	0	40	19	32.2	-	-	-	A	10471922	G	A	10471922	3	1	77	1	0	0	0	0	1	0	0	0	766	1116	39	1	648	1	APCDD1	18	10471922	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		10471922	67605326	41	5234										
FAM69C	0	genome.wustl.edu	37	chr18	72109212	72109212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ggttgttgtttacgcgctgcGctccgcatttgttgactcgt	12	10	0	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	18	72109212	72109212	G	A	SNP	FAM69C	ENST00000343998	human	ensembl	69_37n	-1	known	missense	c.1016	p.A339V	0.984	pfam_Uncharacterised_FAM69	pfam_Uncharacterised_FAM69,superfamily_Kinase-like_dom	-	no_errors	FAM69C	HGNC	ENSG00000187773	42	0	0	153	50	24.63	-	-	-	A	72109212	G	A	72109212	3	1	77	1	0	0	0	0	1	0	0	0	5649	1087	38	1	251	1	FAM69C	18	72109212	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	61637290	72109212	5968036	42	5235										
FBN3	0	genome.wustl.edu	37	chr19	8174244	8174244	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ctgtcccctcggtcatgcgtCtccaggaaacagttcccggc	10	16	2	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	19	8174244	8174244	C	G	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.4485	p.E1495D	0.256	superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	16	0	0	34	7	17.07	-	-	-	G	8174244	C	G	8174244	3	3	77	1	0	0	0	0	1	0	0	0	5750	912	32	2	4060	2	FBN3	19	8174244	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		8174244	50954739	43	5236										
CLEC17A	0	genome.wustl.edu	37	chr19	14705309	14705309	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	atcctcagcccagccctcacCctgagcttctcttctccagg	6	19	4	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	19	14705309	14705309	C	T	SNP	CLEC17A	ENST00000397439	human	ensembl	69_37n	1	known	silent	c.207	p.T69	0.000	NULL	superfamily_C-type_lectin_fold	-	no_errors	CLEC17A	HGNC	ENSG00000187912	55	0	0	117	24	17.02	-	-	-	T	14705309	C	T	14705309	2	4	77	1	0	0	0	0	0	0	0	1	3531	610	22	4		4	CLEC17A	19	14705309	Silent	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	6531065	14705309	44423674	44	5237										
ZNF430	0	genome.wustl.edu	37	chr19	21240799	21240799	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ccttattgaacaaagtaattCatactggagagaaaccctac	6	9	1	2			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	19	21240799	21240799	C	A	SNP	ZNF430	ENST00000261560	human	ensembl	69_37n	1	known	nonsense	c.1685	p.S562*	0.969	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620	66	0	0	48	15	23.81	-	-	-	A	21240799	C	A	21240799	4	1	77	1	0	0	0	0	0	1	0	0	18000	838	29	2	1703	2	ZNF430	19	21240799	Nonsense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09	6535490	21240799	37888184	45	5238										
NLRP5	0	genome.wustl.edu	37	chr19	56569642	56569642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ctgacttctgattgctgtgaGgcactctccttggccctttc	9	13	2	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	19	56569642	56569642	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	silent	c.3336	p.E1112	0.009	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	71	0	0	145	40	21.62	-	-	-	A	56569642	G	A	56569642	2	1	77	1	0	0	0	0	0	0	0	1	10552	991	35	4		4	NLRP5	19	56569642	Silent	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	35328843	56569642	2559341	46	5239										
DLGAP4	0	genome.wustl.edu	37	chr20	35128703	35128703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gtcatctgagaggagcctccCggactgtacccctcacccca	9	17	3	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	20	35128703	35128703	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.2201	p.P734L	0.992	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	23	0	0	94	19	16.81	-	-	-	T	35128703	C	T	35128703	3	4	77	1	0	0	0	0	1	0	0	0	4598	652	23	1	2350	1	DLGAP4	20	35128703	Missense_Mutation	SNP	C	TCGA-A2-A0YJ-01A-11D-A10G-09		35128703	27896817	47	5240										
RAE1	0	genome.wustl.edu	37	chr20	55949798	55949798	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tagatcagcccatctcagctTgctgtttcaatcacaatgga	7	11	4	1			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	20	55949798	55949798	T	A	SNP	RAE1	ENST00000371242	human	ensembl	69_37n	1	known	missense	c.961	p.C321S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	28	0	0	123	17	12.14	-	-	-	A	55949798	T	A	55949798	3	1	77	1	0	0	0	0	1	0	0	0	13081	1812	63	5	999	5	RAE1	20	55949798	Missense_Mutation	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09	20821095	55949798	7075722	48	5241										
ADAMTS5	0	genome.wustl.edu	37	chr21	28302261	28302261	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	ctggagttgtctcctccacaTactccgcacttgtcatactg	7	14	2	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	21	28302261	28302261	T	C	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	silent	c.2169	p.V723	0.009	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	53	0	0	139	20	12.58	-	-	-	C	28302261	T	C	28302261	2	2	77	1	0	0	0	0	0	0	0	1	269	1393	49	5		5	ADAMTS5	21	28302261	Silent	SNP	T	TCGA-A2-A0YJ-01A-11D-A10G-09		28302261	19827634	49	5242										
KRTAP10-1	0	genome.wustl.edu	37	chr21	45959988	45959988	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	gcaggcatccacctgccaggAgtcggagcaagcgctggagc	15	13	0	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	21	45959988	45959988	A	T	SNP	KRTAP10-1	ENST00000400375	human	ensembl	69_37n	-1	known	missense	c.46	p.S16T	0.109	NULL	NULL	-	no_errors	KRTAP10-1	HGNC	ENSG00000215455	56	0	0	252	35	12.03	-	-	-	T	45959988	A	T	45959988	3	4	77	1	0	0	0	0	1	0	0	0	8558	304	11	5	806	5	KRTAP10-1	21	45959988	Missense_Mutation	SNP	A	TCGA-A2-A0YJ-01A-11D-A10G-09	17657727	45959988	2169907	50	5243										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31836773	31836773	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	agagagggtgactagcagcaGgtaaagggtaaaagggctga	17	4	0	3			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	22	31836773	31836773	G	C	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.2633	p.P878R	0.774	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	57	0	0	93	96	50.79	-	-	-	C	31836773	G	C	31836773	3	2	77	1	0	0	0	0	1	0	0	0	5072	1000	35	4	332	4	EIF4ENIF1	22	31836773	Missense_Mutation	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09		31836773	19467793	51	5244										
SFI1	0	genome.wustl.edu	37	chr22	31942922	31942922	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.656262759423648	1.31738708110733	2.29225352112676	0.804299481097109	1	1	0	tggtgggttttccagcacgaGtggaaactctgtgttcgagc	14	8	1	0			TCGA-A2-A0YJ-01A-11D-A10G-09	TCGA-A2-A0YJ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fe8e99f-dce5-4df9-983e-efe63d56bdd5	0fb6d352-b236-4ecf-9d79-39d49a387277	22	31942922	31942922	G	A	SNP	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	silent	c.414	p.E138	0.998	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	32	0	0	58	18	23.68	-	-	-	A	31942922	G	A	31942922	2	1	77	1	0	0	0	0	0	0	0	1	14244	1020	36	4		4	SFI1	22	31942922	Silent	SNP	G	TCGA-A2-A0YJ-01A-11D-A10G-09	106149	31942922	19361644	52	5245										
SLC25A34	0	genome.wustl.edu	37	chr1	16063212	16063212	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggggctggctgccggccttCtgtaccaaggcctcatgaat	13	12	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	16063212	16063212	C	T	SNP	SLC25A34	ENST00000294454	human	ensembl	69_37n	1	known	silent	c.232	p.L78	0.994	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A34	HGNC	ENSG00000162461	40	0	0	27	4	12.9	-	-	-	T	16063212	C	T	16063212	2	4	78	1	0	0	0	0	0	0	0	1	14587	912	32	2		2	SLC25A34	1	16063212	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		16063212	233187409	1	5246										
ASAP3	0	genome.wustl.edu	37	chr1	23768756	23768756	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	atctggctctccccggctttGagcagatactaggaggaggg	14	10	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	23768756	23768756	G	C	SNP	ASAP3	ENST00000336689	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	0.972	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	226	0	0	160	20	11.11	-	-	-	C	23768756	G	C	23768756	2	2	78	1	0	0	0	0	0	0	0	1	1016	1277	45	2		2	ASAP3	1	23768756	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	7705544	23768756	225481865	2	5247										
PPP1R8	0	genome.wustl.edu	37	chr1	28169711	28169711	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcttagaacctgacagagttCaacactgcccacaacaagcg	8	13	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	28169711	28169711	C	G	SNP	PPP1R8	ENST00000311772	human	ensembl	69_37n	1	known	missense	c.507	p.F169L	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	PPP1R8	HGNC	ENSG00000117751	102	0	0	77	12	13.48	-	-	-	G	28169711	C	G	28169711	3	3	78	1	0	0	0	0	1	0	0	0	12454	825	29	2	525	2	PPP1R8	1	28169711	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	4400955	28169711	221080910	3	5248										
PUM1	0	genome.wustl.edu	37	chr1	31406059	31406059	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aacagcgggtgacactgcctCagatgataccattagggggg	14	9	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	31406059	31406059	C	G	SNP	PUM1	ENST00000426105	human	ensembl	69_37n	-1	known	nonstop	c.3566	p.*1189S	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	115	0	0	76	13	14.61	-	-	-	G	31406059	C	G	31406059	4	3	78	1	0	0	0	0	0	0	0	0	12908	837	29	2	4	2	PUM1	1	31406059	Nonstop_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3236348	31406059	217844562	4	5249										
ZCCHC17	0	genome.wustl.edu	37	chr1	31811816	31811816	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tctttcagatgaaaaatgatAgaataaaagtatccctctcc	5	8	3	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	31811816	31811816	A	T	SNP	ZCCHC17	ENST00000422613	human	ensembl	69_37n	1	known	nonsense	c.166	p.R56*	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	ZCCHC17	HGNC	ENSG00000121766	155	0	0	131	22	14.38	-	-	-	T	31811816	A	T	31811816	4	4	78	1	0	0	0	0	0	1	0	0	17681	412	15	5	252	5	ZCCHC17	1	31811816	Nonsense_Mutation	SNP	A	TCGA-A2-A0YK-01A-22D-A117-09	405757	31811816	217438805	5	5250										
HCRTR1	0	genome.wustl.edu	37	chr1	32092459	32092459	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcctgggtccctgcggctctCtgaaggcccctagtccccgc	12	18	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	32092459	32092459	C	G	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	1	known	missense	c.1156	p.L386V	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	86	0	0	71	8	10.13	-	-	-	G	32092459	C	G	32092459	3	3	78	1	0	0	0	0	1	0	0	0	7052	912	32	2	1182	2	HCRTR1	1	32092459	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	280643	32092459	217158162	6	5251										
MAST2	0	genome.wustl.edu	37	chr1	46496719	46496719	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tgtctgagtcatcccacacaGagagtgactcaagccctcca	8	14	3	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	46496719	46496719	G	C	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.2749	p.E917Q	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	43	0	0	30	4	11.76	-	-	-	C	46496719	G	C	46496719	3	2	78	1	0	0	0	0	1	0	0	0	9396	943	33	2	2839	2	MAST2	1	46496719	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	14404260	46496719	202753902	7	5252										
C1orf177	0	genome.wustl.edu	37	chr1	55277548	55277548	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agaatgcctggaaccggtctCattccgagggcctcatgtgc	12	12	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	55277548	55277548	C	G	SNP	C1orf177	ENST00000371273	human	ensembl	69_37n	1	known	missense	c.562	p.H188D	0.978	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398	70	0	0	62	7	10.14	-	-	-	G	55277548	C	G	55277548	3	3	78	1	0	0	0	0	1	0	0	0	2036	826	29	2	580	2	C1orf177	1	55277548	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	8780829	55277548	193973073	8	5253										
RPAP2	0	genome.wustl.edu	37	chr1	92789578	92789578	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gttggaaagagaaacttactTaaagttttgaaggagacttt	10	3	0	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	92789578	92789578	T	G	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	silent	c.1101	p.L367	1.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	135	0	0	90	21	18.92	-	-	-	G	92789578	T	G	92789578	2	3	78	1	0	0	0	0	0	0	0	1	13628	1741	61	5		5	RPAP2	1	92789578	Silent	SNP	T	TCGA-A2-A0YK-01A-22D-A117-09	37512030	92789578	156461043	9	5254										
FNBP1L	0	genome.wustl.edu	37	chr1	93989865	93989865	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	caatatcttgacatgtgctgGaaacagatggataatgtgag	11	5	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	93989865	93989865	G	C	SNP	FNBP1L	ENST00000271234	human	ensembl	69_37n	1	known	missense	c.390	p.W130C	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942	153	1	0.65	119	15	11.19	-	-	-	C	93989865	G	C	93989865	3	2	78	1	0	0	0	0	1	0	0	0	6012	1183	41	2	408	2	FNBP1L	1	93989865	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	1200287	93989865	155260756	10	5255										
ARHGAP29	0	genome.wustl.edu	37	chr1	94650459	94650459	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aagctctattttcaatctctGaggcacatattttgagtata	6	7	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	94650459	94650459	G	C	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	nonsense	c.2078	p.S693*	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	167	0	0	91	16	14.95	-	-	-	C	94650459	G	C	94650459	4	2	78	1	0	0	0	0	0	1	0	0	880	1294	45	2	1731	2	ARHGAP29	1	94650459	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	660594	94650459	154600162	11	5256										
COL11A1	0	genome.wustl.edu	37	chr1	103412488	103412488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aattgggccagctgtacctgCtgacccacgttctcctggtg	11	13	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	103412488	103412488	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.3229	p.A1077T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	39	0	0	28	7	20	-	-	-	T	103412488	C	T	103412488	3	4	78	1	0	0	0	0	1	0	0	0	3697	797	28	4	2331	4	COL11A1	1	103412488	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	8762029	103412488	145838133	12	5257										
NTNG1	0	genome.wustl.edu	37	chr1	107961246	107961246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggccgaatatttcttcccttGaggtttctaacccaaaacaa	6	11	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	107961246	107961246	G	C	SNP	NTNG1	ENST00000370061	human	ensembl	69_37n	1	known	missense	c.1132	p.E378Q	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	245	0	0	193	31	13.84	-	-	-	C	107961246	G	C	107961246	3	2	78	1	0	0	0	0	1	0	0	0	10777	1291	45	2	1150	2	NTNG1	1	107961246	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	4548758	107961246	141289375	13	5258										
WDR47	0	genome.wustl.edu	37	chr1	109554133	109554133	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agcttcacttagcttcctatCagcagggatgaattctgcaa	8	10	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	109554133	109554133	C	A	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.556	p.D186Y	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	187	0	0	137	20	12.74	-	-	-	A	109554133	C	A	109554133	3	1	78	1	0	0	0	0	1	0	0	0	17397	826	29	2	2271	2	WDR47	1	109554133	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1592887	109554133	139696488	14	5259										
GNAT2	0	genome.wustl.edu	37	chr1	110148667	110148667	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	atgatgcaggtgactccctcGaagcagtggatccacttctt	10	11	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	110148667	110148667	G	A	SNP	GNAT2	ENST00000351050	human	ensembl	69_37n	-1	known	silent	c.645	p.F215	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT2	HGNC	ENSG00000134183	159	1	0.62	124	15	10.79	-	-	-	A	110148667	G	A	110148667	2	1	78	1	0	0	0	0	0	0	0	1	6564	1049	37	1		1	GNAT2	1	110148667	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	594534	110148667	139101954	15	5260										
WARS2	0	genome.wustl.edu	37	chr1	119683237	119683237	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccggatgaagctccagcgctCacgcgctttccgcattgagt	11	14	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	119683237	119683237	C	A	SNP	WARS2	ENST00000235521	human	ensembl	69_37n	-1	known	nonsense	c.31	p.E11*	0.929	NULL	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-synth,tigrfam_Trp-tRNA-synth	-	no_errors	WARS2	HGNC	ENSG00000116874	54	0	0	48	7	12.73	-	-	-	A	119683237	C	A	119683237	4	1	78	1	0	0	0	0	0	1	0	0	17347	835	29	2	1104	2	WARS2	1	119683237	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	9534570	119683237	129567384	16	5261										
SNX27	0	genome.wustl.edu	37	chr1	151641007	151641007	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acattcagaattatacatcaGctgtgccaggcacctgcttg	8	11	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	151641007	151641007	G	T	SNP	SNX27	ENST00000368843	human	ensembl	69_37n	1	known	missense	c.1045	p.A349S	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376	196	1	0.5	134	17	11.26	-	-	-	T	151641007	G	T	151641007	3	4	78	1	0	0	0	0	1	0	0	0	14986	971	34	4	1071	4	SNX27	1	151641007	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	31957770	151641007	97609614	17	5262										
SHE	0	genome.wustl.edu	37	chr1	154471712	154471712	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcatagtcttctaaaatgatGacctgaaaaagaacaagaga	8	6	2	5			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	154471712	154471712	G	A	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	silent	c.594	p.V198	0.999	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	176	1	0.56	154	24	13.48	-	-	-	A	154471712	G	A	154471712	2	1	78	1	0	0	0	0	0	0	0	1	14365	1277	45	2		2	SHE	1	154471712	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	2830705	154471712	94778909	18	5263										
SCAMP3	0	genome.wustl.edu	37	chr1	155231934	155231934	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gggtttccgccgtctctgctCtgagccatgtttgcaactgc	11	13	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	155231934	155231934	C	T	SNP	SCAMP3	ENST00000302631	human	ensembl	69_37n	-1	known	silent	c.9	p.Q3	0.850	NULL	pfam_SCAMP	-	no_errors	SCAMP3	HGNC	ENSG00000116521	89	0	0	66	10	13.16	-	-	-	T	155231934	C	T	155231934	2	4	78	1	0	0	0	0	0	0	0	1	13959	912	32	2		2	SCAMP3	1	155231934	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	760222	155231934	94018687	19	5264										
RIT1	0	genome.wustl.edu	37	chr1	155880559	155880559	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gttccagaatccattgtcctCttggggccttcctcggttgc	10	13	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	155880559	155880559	C	T	SNP	RIT1	ENST00000368322	human	ensembl	69_37n	-1	putative	silent	c.45	p.K15	0.006	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT1	HGNC	ENSG00000143622	108	0	0	83	14	14.43	-	-	-	T	155880559	C	T	155880559	2	4	78	1	0	0	0	0	0	0	0	1	13472	928	32	2		2	RIT1	1	155880559	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	648625	155880559	93370062	20	5265										
IQGAP3	0	genome.wustl.edu	37	chr1	156500030	156500030	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggagggagtgagctgtcagtGagcggtgtcgtcgcagtggc	20	7	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	156500030	156500030	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.4271	p.S1424L	0.999	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	93	0	0	73	12	13.95	-	-	-	A	156500030	G	A	156500030	3	1	78	1	0	0	0	0	1	0	0	0	7870	1294	45	2	644	2	IQGAP3	1	156500030	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	619471	156500030	92750591	21	5266										
RCSD1	0	genome.wustl.edu	37	chr1	167663386	167663386	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctgcctggggcctcacccaaGagtcctggactcaaggctat	11	14	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	167663386	167663386	G	C	SNP	RCSD1	ENST00000367854	human	ensembl	69_37n	1	known	missense	c.321	p.K107N	1.000	NULL	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771	87	0	0	62	11	15.07	-	-	-	C	167663386	G	C	167663386	3	2	78	1	0	0	0	0	1	0	0	0	13268	933	33	2	339	2	RCSD1	1	167663386	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	11163356	167663386	81587235	22	5267										
ZNF648	0	genome.wustl.edu	37	chr1	182025757	182025757	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tggatgcgctggtggcgcacGaggcgcgagggctgcgcgaa	20	10	0	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	182025757	182025757	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	silent	c.1389	p.L463	0.571	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	48	0	0	35	6	14.63	-	-	-	A	182025757	G	A	182025757	2	1	78	1	0	0	0	0	0	0	0	1	18159	1045	37	1		1	ZNF648	1	182025757	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	14362371	182025757	67224864	23	5268										
PTPN7	0	genome.wustl.edu	37	chr1	202121761	202121761	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cagcaggggcccagctgattCtggtgtctgatggtctggcc	15	11	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	202121761	202121761	C	T	SNP	PTPN7	ENST00000309017	human	ensembl	69_37n	-1	known	missense	c.1099	p.E367K	0.970	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN7	HGNC	ENSG00000143851	122	0	0	72	10	12.2	-	-	-	T	202121761	C	T	202121761	3	4	78	1	0	0	0	0	1	0	0	0	12876	922	32	2	310	2	PTPN7	1	202121761	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	20096004	202121761	47128860	24	5269										
SYT2	0	genome.wustl.edu	37	chr1	202568369	202568369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aatctgctcgaaggggatctCaaagctgaaggactcgttga	12	8	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	202568369	202568369	C	G	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	missense	c.1030	p.E344Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	391	0	0	356	52	12.71	-	-	-	G	202568369	C	G	202568369	3	3	78	1	0	0	0	0	1	0	0	0	15566	835	29	2	237	2	SYT2	1	202568369	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	446608	202568369	46682252	25	5270										
PROX1	0	genome.wustl.edu	37	chr1	214170738	214170738	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctcggagatcctggatgccaGggcccaggactctgtcggaa	14	12	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	214170738	214170738	G	C	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.860	p.R287T	0.981	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	70	0	0	62	7	10.14	-	-	-	C	214170738	G	C	214170738	3	2	78	1	0	0	0	0	1	0	0	0	12641	1000	35	4	862	4	PROX1	1	214170738	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	11602369	214170738	35079883	26	5271										
USH2A	0	genome.wustl.edu	37	chr1	216390820	216390820	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccagtgacaaattgtttacaGaaacactggcctgtgaccaa	8	10	0	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	216390820	216390820	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3066	p.F1022L	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	100	0	0	112	22	16.3	-	-	-	C	216390820	G	C	216390820	3	2	78	1	0	0	0	0	1	0	0	0	17133	933	33	2	12788	2	USH2A	1	216390820	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	2220082	216390820	32859801	27	5272										
SMYD3	0	genome.wustl.edu	37	chr1	246078940	246078940	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	atatccaggtagcagatggtGagctgtgcaggccagagaga	15	7	0	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	246078940	246078940	G	A	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	silent	c.705	p.L235	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	105	0	0	78	14	15.22	-	-	-	A	246078940	G	A	246078940	2	1	78	1	0	0	0	0	0	0	0	1	14912	1277	45	2		2	SMYD3	1	246078940	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	29688120	246078940	3171681	28	5273										
SMYD3	0	genome.wustl.edu	37	chr1	246670372	246670372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcacccgagaaggcagcggtCgcagacgacgccacgactcc	13	16	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	1	246670372	246670372	C	T	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	missense	c.148	p.D50N	0.999	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_Znf_MYND	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	19	0	0	12	4	25	-	-	-	T	246670372	C	T	246670372	3	4	78	1	0	0	0	0	1	0	0	0	14912	884	31	1	1186	1	SMYD3	1	246670372	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	591432	246670372	2580249	29	5274										
PRKD3	0	genome.wustl.edu	37	chr2	37516501	37516501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttaccttagaatacgtacctCttcactgggaagggctacat	8	10	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	37516501	37516501	C	G	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	missense	c.715	p.E239Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	157	0	0	122	17	12.23	-	-	-	G	37516501	C	G	37516501	3	3	78	1	0	0	0	0	1	0	0	0	12601	922	32	2	2017	2	PRKD3	2	37516501	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		37516501	205682872	30	5275										
DYNC2LI1	0	genome.wustl.edu	37	chr2	44032338	44032338	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggaccctgcgagagatcctCagtatgctgaaaatgaagtc	11	9	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	44032338	44032338	C	T	SNP	DYNC2LI1	ENST00000260605	human	ensembl	69_37n	1	known	nonsense	c.946	p.Q316*	1.000	NULL	pfam_Dynein_light_int_chain	-	no_errors	DYNC2LI1	HGNC	ENSG00000138036	132	0	0	67	19	22.09	-	-	-	T	44032338	C	T	44032338	4	4	78	1	0	0	0	0	0	1	0	0	4882	827	29	2	1091	2	DYNC2LI1	2	44032338	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	6515837	44032338	199167035	31	5276										
MBD5	0	genome.wustl.edu	37	chr2	149226685	149226685	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtccactctcaggtacctatGatgaatgtaagcatgcctcc	8	12	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	149226685	149226685	G	C	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	missense	c.1173	p.M391I	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	104	0	0	76	12	13.48	-	-	-	C	149226685	G	C	149226685	3	2	78	1	0	0	0	0	1	0	0	0	9418	1290	45	2	1187	2	MBD5	2	149226685	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	105194347	149226685	93972688	32	5277										
GORASP2	0	genome.wustl.edu	37	chr2	171807955	171807955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttacaccaaattctgcatggGgtggagaaggcaggtaaggt	14	6	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	171807955	171807955	G	A	SNP	GORASP2	ENST00000452526	human	ensembl	69_37n	1	known	missense	c.589	p.G197S	1.000	pfam_GRASP55/65_PDZ,superfamily_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806	184	0	0	124	25	16.78	-	-	-	A	171807955	G	A	171807955	3	1	78	1	0	0	0	0	1	0	0	0	6625	1232	43	4	571	4	GORASP2	2	171807955	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	22581270	171807955	71391418	33	5278										
TTN	0	genome.wustl.edu	37	chr2	179592543	179592543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cttaaattccactgtagaatCaggtatggcttgctgtcgcc	9	10	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	179592543	179592543	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.16030	p.D5344H	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	115	0	0	92	12	11.54	-	-	-	G	179592543	C	G	179592543	3	3	78	1	0	0	0	0	1	0	0	0	16832	826	29	2	84947	2	TTN	2	179592543	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	7784588	179592543	63606830	34	5279										
MFF	0	genome.wustl.edu	37	chr2	228211994	228211994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtcctccccatatgttacctGaagatggagctaatctttcc	7	12	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	228211994	228211994	G	A	SNP	MFF	ENST00000353339	human	ensembl	69_37n	1	known	missense	c.646	p.E216K	1.000	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958	226	0	0	143	31	17.82	-	-	-	A	228211994	G	A	228211994	3	1	78	1	0	0	0	0	1	0	0	0	9590	1291	45	2	668	2	MFF	2	228211994	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	48619451	228211994	14987379	35	5280										
ECEL1	0	genome.wustl.edu	37	chr2	233347817	233347817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggcagggtcagggcccacctCatactccttgtccacagcat	10	15	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	233347817	233347817	C	G	SNP	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	missense	c.1579	p.E527Q	1.000	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	51	0	0	28	7	20	-	-	-	G	233347817	C	G	233347817	3	3	78	1	0	0	0	0	1	0	0	0	4926	835	29	2	788	2	ECEL1	2	233347817	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	5135823	233347817	9851556	36	5281										
PER2	0	genome.wustl.edu	37	chr2	239181776	239181776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cacggtgtaggagggcacgtCtgctccacaggggtgaccct	15	12	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	2	239181776	239181776	C	G	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.505	p.D169H	0.924	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	88	0	0	58	8	12.12	-	-	-	G	239181776	C	G	239181776	3	3	78	1	0	0	0	0	1	0	0	0	11803	913	32	2	3338	2	PER2	2	239181776	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	5833959	239181776	4017597	37	5282										
C3orf20	0	genome.wustl.edu	37	chr3	14725873	14725873	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gggagaagtggctacagcagCggacagttgtggaaaggtgg	19	5	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	14725873	14725873	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	114	0	0	96	17	15.04	-	-	-	T	14725873	C	T	14725873	2	4	78	1	0	0	0	0	0	0	0	1	2233	767	27	1		1	C3orf20	3	14725873	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		14725873	183296557	38	5283										
FGD5	0	genome.wustl.edu	37	chr3	14963443	14963443	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agctcctgtgcagagagggaCgagtggtatggctgtctgag	17	7	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	14963443	14963443	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.3588	p.D1196	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	41	0	0	39	5	11.36	-	-	-	T	14963443	C	T	14963443	2	4	78	1	0	0	0	0	0	0	0	1	5882	535	19	1		1	FGD5	3	14963443	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	237570	14963443	183058987	39	5284										
LRRFIP2	0	genome.wustl.edu	37	chr3	37146954	37146954	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aatcatgctcaccacactctCccttcgtccacgactggcac	5	18	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	37146954	37146954	C	G	SNP	LRRFIP2	ENST00000336686	human	ensembl	69_37n	-1	known	missense	c.775	p.E259Q	1.000	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	153	0	0	101	17	14.41	-	-	-	G	37146954	C	G	37146954	3	3	78	1	0	0	0	0	1	0	0	0	9094	864	30	2	1450	2	LRRFIP2	3	37146954	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	22183511	37146954	160875476	40	5285										
ZNF662	0	genome.wustl.edu	37	chr3	42956022	42956022	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtatggaaagttctacaaatGatattatagaagtgattgtc	9	3	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	42956022	42956022	G	A	SNP	ZNF662	ENST00000328199	human	ensembl	69_37n	1	known	missense	c.535	p.D179N	0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983	147	0	0	104	14	11.86	-	-	-	A	42956022	G	A	42956022	3	1	78	1	0	0	0	0	1	0	0	0	18167	1290	45	2	658	2	ZNF662	3	42956022	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	5809068	42956022	155066408	41	5286										
SNRK	0	genome.wustl.edu	37	chr3	43384891	43384891	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccacatacttcctgctggctGaaaggatcctgagagaaaag	10	10	0	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	43384891	43384891	G	C	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	1	known	missense	c.1000	p.E334Q	1.000	pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	101	0	0	74	13	14.94	-	-	-	C	43384891	G	C	43384891	3	2	78	1	0	0	0	0	1	0	0	0	14940	1291	45	2	1014	2	SNRK	3	43384891	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	428869	43384891	154637539	42	5287										
KIAA1143	0	genome.wustl.edu	37	chr3	44795848	44795848	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cccatcttcatctgggggctGaggctgaattctctagggaa	12	10	4	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	44795848	44795848	G	T	SNP	KIAA1143	ENST00000296121	human	ensembl	69_37n	-1	known	missense	c.121	p.Q41K	1.000	NULL	NULL	-	no_errors	KIAA1143	HGNC	ENSG00000163807	229	0	0	191	33	14.73	-	-	-	T	44795848	G	T	44795848	3	4	78	1	0	0	0	0	1	0	0	0	8261	1299	45	2	351	2	KIAA1143	3	44795848	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	1410957	44795848	153226582	43	5288										
QRICH1	0	genome.wustl.edu	37	chr3	49083950	49083950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccgtgtcattagacagagccCataattcaactctgccacag	7	13	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	49083950	49083950	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	missense	c.1579	p.G527R	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	113	0	0	87	12	12.12	-	-	-	T	49083950	C	T	49083950	3	4	78	1	0	0	0	0	1	0	0	0	12962	594	21	4	775	4	QRICH1	3	49083950	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	4288102	49083950	148938480	44	5289										
CACNA2D2	0	genome.wustl.edu	37	chr3	50413289	50413289	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tctgcttgtggcccttgttgCcatcaatcatgctccgacgg	10	13	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	50413289	50413289	C	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.1796	p.G599V	1.000	pfam_VDCC_a2/dsu	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	61	0	0	51	6	10.53	-	-	-	A	50413289	C	A	50413289	3	1	78	1	0	0	0	0	1	0	0	0	2574	739	26	4	1742	4	CACNA2D2	3	50413289	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1329339	50413289	147609141	45	5290										
ARHGAP31	0	genome.wustl.edu	37	chr3	119101244	119101244	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtgtgggcgccaaacctcctCaggtaaccactctaccctcc	8	17	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	119101244	119101244	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	silent	c.537	p.L179	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	113	0	0	64	12	15.79	-	-	-	T	119101244	C	T	119101244	2	4	78	1	0	0	0	0	0	0	0	1	882	813	29	2		2	ARHGAP31	3	119101244	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	68687955	119101244	78921186	46	5291										
CPA3	0	genome.wustl.edu	37	chr3	148603939	148603939	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cgatatgaaacccgctacatCtatggcccaatagaatcaac	6	12	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	148603939	148603939	C	A	SNP	CPA3	ENST00000296046	human	ensembl	69_37n	1	known	silent	c.1041	p.I347	0.976	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA3	HGNC	ENSG00000163751	234	0	0	175	21	10.71	-	-	-	A	148603939	C	A	148603939	2	1	78	1	0	0	0	0	0	0	0	1	3821	903	32	2		2	CPA3	3	148603939	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	29502695	148603939	49418491	47	5292										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	118	0	0	108	13	10.74	-	-	-	T	178952085	A	T	178952085	3	4	78	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0YK-01A-22D-A117-09	30348146	178952085	19070345	48	5293										
SLC26A1	0	genome.wustl.edu	37	chr4	985117	985117	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	atgaggcaaagcaggctgaaGatgcccacggagacatgccg	14	10	0	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	985117	985117	G	C	SNP	SLC26A1	ENST00000361661	human	ensembl	69_37n	-1	known	missense	c.375	p.I125M	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A1	HGNC	ENSG00000145217	32	0	0	30	5	14.29	-	-	-	C	985117	G	C	985117	3	2	78	1	0	0	0	0	1	0	0	0	14603	932	33	2	1841	2	SLC26A1	4	985117	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		985117	190169159	49	5294										
HAUS3	0	genome.wustl.edu	37	chr4	2233655	2233655	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	attcagttttcagtaattttCaatcttcaagactaacagcc	4	9	5	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	2233655	2233655	C	G	SNP	HAUS3	ENST00000243706	human	ensembl	69_37n	-1	known	nonstop	c.1811	p.*604S	1.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367	66	0	0	62	7	10.14	-	-	-	G	2233655	C	G	2233655	4	3	78	1	0	0	0	0	0	0	0	0	7018	837	29	2	4	2	HAUS3	4	2233655	Nonstop_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1248538	2233655	188920621	50	5295										
RGS12	0	genome.wustl.edu	37	chr4	3344728	3344728	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acgcacgtctgctcggagatCatttgggagatccaagagat	12	9	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	3344728	3344728	C	T	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	missense	c.1946	p.S649L	0.845	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	231	1	0.43	168	24	12.5	-	-	-	T	3344728	C	T	3344728	3	4	78	1	0	0	0	0	1	0	0	0	13379	838	29	2	1952	2	RGS12	4	3344728	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1111073	3344728	187809548	51	5296										
G3BP2	0	genome.wustl.edu	37	chr4	76570799	76570799	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cctaatatccctgcgatcatCaccaccacctctggtttctc	4	17	4	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	76570799	76570799	C	A	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.1264	p.D422Y	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	458	0	0	357	58	13.98	-	-	-	A	76570799	C	A	76570799	3	1	78	1	0	0	0	0	1	0	0	0	6191	826	29	2	188	2	G3BP2	4	76570799	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	73226071	76570799	114583477	52	5297										
PAQR3	0	genome.wustl.edu	37	chr4	79856355	79856355	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggtaacacagatgtcatgtCatatattcccagggtgaaga	10	7	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	79856355	79856355	C	G	SNP	PAQR3	ENST00000511594	human	ensembl	69_37n	-1	known	missense	c.268	p.D90H	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291	142	1	0.7	93	13	12.26	-	-	-	G	79856355	C	G	79856355	3	3	78	1	0	0	0	0	1	0	0	0	11509	826	29	2	687	2	PAQR3	4	79856355	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3285556	79856355	111297921	53	5298										
INTU	0	genome.wustl.edu	37	chr4	128626754	128626754	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gttaaattcaagggttatttGatatgcagtcatttgcccaa	8	6	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	4	128626754	128626754	G	C	SNP	INTU	ENST00000335251	human	ensembl	69_37n	1	known	missense	c.1575	p.L525F	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	239	1	0.41	184	23	11.11	-	-	-	C	128626754	G	C	128626754	3	2	78	1	0	0	0	0	1	0	0	0	7840	1281	45	2	1617	2	INTU	4	128626754	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	48770399	128626754	62527522	54	5299										
CDH10	0	genome.wustl.edu	37	chr5	24511615	24511615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggattcaagaactcgaagatGaatagtgtctgtaaagtata	10	4	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	24511615	24511615	G	A	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	missense	c.823	p.H275Y	0.995	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	58	0	0	49	10	16.95	-	-	-	A	24511615	G	A	24511615	3	1	78	1	0	0	0	0	1	0	0	0	3125	1290	45	2	1571	2	CDH10	5	24511615	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		24511615	156403645	55	5300										
MAP3K1	0	genome.wustl.edu	37	chr5	56178257	56178257	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aagtaaacagggagatccctCaaaaaatagcatgacacttg	8	8	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	56178257	56178257	C	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3230	p.S1077*	0.756	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	100	0	0	74	11	12.94	-	-	-	G	56178257	C	G	56178257	4	3	78	1	0	0	0	0	0	1	0	0	9314	838	29	2	3284	2	MAP3K1	5	56178257	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	31666642	56178257	124737003	56	5301										
CCDC125	0	genome.wustl.edu	37	chr5	68581193	68581193	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gagcatcttaaggacctcttGaggactgtcctggtcttcca	10	11	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	68581193	68581193	G	A	SNP	CCDC125	ENST00000396496	human	ensembl	69_37n	-1	known	nonsense	c.1201	p.Q401*	0.999	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	143	0	0	107	12	10.08	-	-	-	A	68581193	G	A	68581193	4	1	78	1	0	0	0	0	0	1	0	0	2786	1299	45	2	342	2	CCDC125	5	68581193	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	12402936	68581193	112334067	57	5302										
AP3B1	0	genome.wustl.edu	37	chr5	77590302	77590302	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaatcgctgctaaagaggccGaaggcccccgagggggaaat	14	10	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	77590302	77590302	G	A	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	silent	c.102	p.F34	0.998	pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	109	0	0	73	13	15.12	-	-	-	A	77590302	G	A	77590302	2	1	78	1	0	0	0	0	0	0	0	1	745	1049	37	1		1	AP3B1	5	77590302	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	9009109	77590302	103324958	58	5303										
PAPD4	0	genome.wustl.edu	37	chr5	78919237	78919237	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cattatgtaccagatatagtCagatgtgttccaccttttcg	7	9	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	78919237	78919237	C	T	SNP	PAPD4	ENST00000296783	human	ensembl	69_37n	1	known	silent	c.390	p.V130	1.000	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329	165	0	0	99	12	10.81	-	-	-	T	78919237	C	T	78919237	2	4	78	1	0	0	0	0	0	0	0	1	11497	813	29	2		2	PAPD4	5	78919237	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1328935	78919237	101996023	59	5304										
UBE2D2	0	genome.wustl.edu	37	chr5	138994175	138994175	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcttgttatttttcagtgttCcattggcaagctacaataat	6	7	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	138994175	138994175	C	G	SNP	UBE2D2	ENST00000398733	human	ensembl	69_37n	1	known	missense	c.93	p.F31L	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D2	HGNC	ENSG00000131508	328	0	0	209	31	12.92	-	-	-	G	138994175	C	G	138994175	3	3	78	1	0	0	0	0	1	0	0	0	16946	854	30	2	103	2	UBE2D2	5	138994175	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	60074938	138994175	41921085	60	5305										
PCDHB14	0	genome.wustl.edu	37	chr5	140604293	140604293	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	actttttcactctagtttctGaaaaagcactggacagagag	8	8	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	140604293	140604293	G	C	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	missense	c.1216	p.E406Q	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	115	0	0	121	15	11.03	-	-	-	C	140604293	G	C	140604293	3	2	78	1	0	0	0	0	1	0	0	0	11612	1291	45	2	1218	2	PCDHB14	5	140604293	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	1610118	140604293	40310967	61	5306										
G3BP1	0	genome.wustl.edu	37	chr5	151179471	151179471	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cccgtccagagtctaagcctGaatctcagattccaccacaa	6	15	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	5	151179471	151179471	G	A	SNP	G3BP1	ENST00000356245	human	ensembl	69_37n	1	known	missense	c.865	p.E289K	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907	89	0	0	70	8	10.26	-	-	-	A	151179471	G	A	151179471	3	1	78	1	0	0	0	0	1	0	0	0	6190	1291	45	2	895	2	G3BP1	5	151179471	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	10575178	151179471	29735789	62	5307										
KIF13A	0	genome.wustl.edu	37	chr6	17796927	17796927	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcagtgttcttgtcttagcaTgaagagaatcgacctcccag	10	10	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	17796927	17796927	T	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.2915	p.H972R	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	79	0	0	52	7	11.67	-	-	-	C	17796927	T	C	17796927	3	2	78	1	0	0	0	0	1	0	0	0	8326	1464	51	5	2595	5	KIF13A	6	17796927	Missense_Mutation	SNP	T	TCGA-A2-A0YK-01A-22D-A117-09		17796927	153318140	63	5308										
ZNF165	0	genome.wustl.edu	37	chr6	28056897	28056897	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cagagaatccacactggagaGagatgctatgaatgtaatga	11	6	0	5			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	28056897	28056897	G	C	SNP	ZNF165	ENST00000377325	human	ensembl	69_37n	1	known	missense	c.1107	p.E369D	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279	83	0	0	62	7	10.14	-	-	-	C	28056897	G	C	28056897	3	2	78	1	0	0	0	0	1	0	0	0	17836	933	33	2	1117	2	ZNF165	6	28056897	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	10259970	28056897	143058170	64	5309										
TCP11	0	genome.wustl.edu	37	chr6	35086222	35086222	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcctccaggaaggtctaataGagaccgctgcacaccaagaa	10	12	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	35086222	35086222	G	T	SNP	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	missense	c.1375	p.L459I	1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	133	1	0.74	76	12	13.64	-	-	-	T	35086222	G	T	35086222	3	4	78	1	0	0	0	0	1	0	0	0	15808	933	33	2	179	2	TCP11	6	35086222	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	7029325	35086222	136028845	65	5310										
ABCC10	0	genome.wustl.edu	37	chr6	43403563	43403563	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccttgggtgatcaatggtctCctggaggccaaagtgtcctt	12	10	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	43403563	43403563	C	G	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	silent	c.1683	p.L561	0.999	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	157	0	0	102	20	16.39	-	-	-	G	43403563	C	G	43403563	2	3	78	1	0	0	0	0	0	0	0	1	50	842	30	2		2	ABCC10	6	43403563	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	8317341	43403563	127711504	66	5311										
GPR6	0	genome.wustl.edu	37	chr6	110301388	110301388	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agtgccctttcgttccaggtCtcccagcgaggtctgaaggg	13	12	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	110301388	110301388	C	G	SNP	GPR6	ENST00000414000	human	ensembl	69_37n	1	known	missense	c.1118	p.S373C	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR6_rcpt,prints_GPR_orph_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360	74	0	0	66	8	10.81	-	-	-	G	110301388	C	G	110301388	3	3	78	1	0	0	0	0	1	0	0	0	6751	913	32	2	1075	2	GPR6	6	110301388	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	66897825	110301388	60813679	67	5312										
PTPRK	0	genome.wustl.edu	37	chr6	128410949	128410949	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cagatggttcacaacatgctGaggggctttggggtccatgt	14	8	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	128410949	128410949	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	nonsense	c.1351	p.Q451*	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	270	1	0.37	231	26	10.12	-	-	-	A	128410949	G	A	128410949	4	1	78	1	0	0	0	0	0	1	0	0	12888	1299	45	2	3085	2	PTPRK	6	128410949	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	18109561	128410949	42704118	68	5313										
CTGF	0	genome.wustl.edu	37	chr6	132271151	132271151	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcacaggcggctctgcttctCtagcctgcaggaggcgttgt	14	12	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	132271151	132271151	C	G	SNP	CTGF	ENST00000367976	human	ensembl	69_37n	-1	known	missense	c.691	p.E231Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523	116	0	0	88	12	12	-	-	-	G	132271151	C	G	132271151	3	3	78	1	0	0	0	0	1	0	0	0	4040	922	32	2	366	2	CTGF	6	132271151	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3860202	132271151	38843916	69	5314										
UTRN	0	genome.wustl.edu	37	chr6	145103087	145103087	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tagagttgagtacaacaaatGaaattttcaaacagcacaag	7	6	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	145103087	145103087	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.8662	p.E2888K	1.000	pfam_EF-hand_dom_typ1,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	142	0	0	126	20	13.7	-	-	-	A	145103087	G	A	145103087	3	1	78	1	0	0	0	0	1	0	0	0	17200	1291	45	2	8900	2	UTRN	6	145103087	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	12831936	145103087	26011980	70	5315										
UST	0	genome.wustl.edu	37	chr6	149395130	149395130	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcaagtttggacttaagtctCacgtcagcaagccccccctg	9	14	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	149395130	149395130	C	T	SNP	UST	ENST00000367463	human	ensembl	69_37n	1	known	missense	c.1099	p.H367Y	0.051	NULL	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	-	no_errors	UST	HGNC	ENSG00000111962	134	0	0	108	13	10.74	-	-	-	T	149395130	C	T	149395130	3	4	78	1	0	0	0	0	1	0	0	0	17190	826	29	2	1129	2	UST	6	149395130	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	4292043	149395130	21719937	71	5316										
PNLDC1	0	genome.wustl.edu	37	chr6	160222208	160222208	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agtgttcagcaatttacagtCtgtcagattggtgagtttaa	10	5	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	6	160222208	160222208	C	A	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	silent	c.165	p.V55	0.988	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	231	0	0	164	26	13.68	-	-	-	A	160222208	C	A	160222208	2	1	78	1	0	0	0	0	0	0	0	1	12222	900	32	2		2	PNLDC1	6	160222208	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	10827078	160222208	10892859	72	5317										
PEX1	0	genome.wustl.edu	37	chr7	92147080	92147080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	attgaaaggaaaaaatgcttCctatcatagtccataaactt	5	7	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	92147080	92147080	C	T	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.749	p.G250E	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	202	0	0	137	23	14.37	-	-	-	T	92147080	C	T	92147080	3	4	78	1	0	0	0	0	1	0	0	0	11809	855	30	2	3182	2	PEX1	7	92147080	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		92147080	66991583	73	5318										
SLC25A13	0	genome.wustl.edu	37	chr7	95906630	95906630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggggacatgaaaaattcaccGtttttctcaatgcttgcata	8	8	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	95906630	95906630	G	A	SNP	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	silent	c.90	p.N30	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	113	0	0	80	15	15.79	-	-	-	A	95906630	G	A	95906630	2	1	78	1	0	0	0	0	0	0	0	1	14564	1136	40	1		1	SLC25A13	7	95906630	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	3759550	95906630	63232033	74	5319										
ARPC1A	0	genome.wustl.edu	37	chr7	98951679	98951679	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtaagcttctctgccagtggGagccgcctggcctgggtcag	15	12	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	98951679	98951679	G	C	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	silent	c.648	p.G216	0.977	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	109	1	0.9	80	13	13.98	-	-	-	C	98951679	G	C	98951679	2	2	78	1	0	0	0	0	0	0	0	1	973	1161	41	2		2	ARPC1A	7	98951679	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	3045049	98951679	60186984	75	5320										
CYP3A43	0	genome.wustl.edu	37	chr7	99457509	99457509	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcatcatttttgctgcctatGacacaactagcaccactctc	4	14	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	99457509	99457509	G	C	SNP	CYP3A43	ENST00000222382	human	ensembl	69_37n	1	known	missense	c.922	p.D308H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP3A43	HGNC	ENSG00000021461	210	0	0	177	24	11.94	-	-	-	C	99457509	G	C	99457509	3	2	78	1	0	0	0	0	1	0	0	0	4210	1290	45	2	960	2	CYP3A43	7	99457509	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	505830	99457509	59681154	76	5321										
COPS6	0	genome.wustl.edu	37	chr7	99687264	99687264	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gggctctgattggcaagcagGagggccgaaatatcgaggtg	17	7	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	99687264	99687264	G	T	SNP	COPS6	ENST00000303904	human	ensembl	69_37n	1	known	nonsense	c.229	p.E77*	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	COPS6	HGNC	ENSG00000168090	179	0	0	108	18	14.29	-	-	-	T	99687264	G	T	99687264	4	4	78	1	0	0	0	0	0	1	0	0	3767	1175	41	2	239	2	COPS6	7	99687264	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	229755	99687264	59451399	77	5322										
ARMC10	0	genome.wustl.edu	37	chr7	102738803	102738803	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tagcaaaggagattcttcttCgagtacttacgctatttcag	8	8	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	102738803	102738803	C	T	SNP	ARMC10	ENST00000323716	human	ensembl	69_37n	1	known	nonsense	c.835	p.R279*	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC10	HGNC	ENSG00000170632	142	0	0	88	10	10.2	-	-	-	T	102738803	C	T	102738803	4	4	78	1	0	0	0	0	0	1	0	0	954	876	31	1	861	1	ARMC10	7	102738803	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3051539	102738803	56399860	78	5323										
EPHB6	0	genome.wustl.edu	37	chr7	142564664	142564664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtggctgttacccccaggcaGaagacgaatcccactccttc	9	15	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	142564664	142564664	G	C	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	missense	c.1588	p.E530Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	49	0	0	32	5	13.51	-	-	-	C	142564664	G	C	142564664	3	2	78	1	0	0	0	0	1	0	0	0	5215	943	33	2	1614	2	EPHB6	7	142564664	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	39825861	142564664	16573999	79	5324										
ABCB8	0	genome.wustl.edu	37	chr7	150732799	150732799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	accctgatgggctcaggcctCcgaaaattgtctcgccagtg	11	13	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	7	150732799	150732799	C	T	SNP	ABCB8	ENST00000491920	human	ensembl	69_37n	1	putative	missense	c.94	p.P32S	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	ABCB8	HGNC	ENSG00000197150	40	0	0	31	5	13.89	-	-	-	T	150732799	C	T	150732799	3	4	78	1	0	0	0	0	1	0	0	0	47	842	30	2	919	2	ABCB8	7	150732799	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	8168135	150732799	8405864	80	5325										
CSMD1	0	genome.wustl.edu	37	chr8	3045463	3045463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aagggagtcccagttctgctCcgtggcaaaactgatcactt	10	11	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	3045463	3045463	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.5551	p.E1851K	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	66	0	0	40	8	16.67	-	-	-	T	3045463	C	T	3045463	3	4	78	1	0	0	0	0	1	0	0	0	3976	864	30	2	5286	2	CSMD1	8	3045463	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		3045463	143318559	81	5326										
ST18	0	genome.wustl.edu	37	chr8	53038648	53038648	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cttgatggtcatgagttcttCagaaaccttgccctttttga	8	9	3	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	53038648	53038648	C	T	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2719	p.E907K	0.999	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	209	0	0	124	19	13.29	-	-	-	T	53038648	C	T	53038648	3	4	78	1	0	0	0	0	1	0	0	0	15303	835	29	2	440	2	ST18	8	53038648	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	49993185	53038648	93325374	82	5327										
KCNB2	0	genome.wustl.edu	37	chr8	73480017	73480017	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aacaggaagacttcaaggtcGacactttcccttcctccaga	7	13	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	73480017	73480017	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	silent	c.48	p.S16	0.352	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	60	0	0	43	8	15.69	-	-	-	A	73480017	G	A	73480017	2	1	78	1	0	0	0	0	0	0	0	1	8067	1045	37	1		1	KCNB2	8	73480017	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	20441369	73480017	72884005	83	5328										
LRRCC1	0	genome.wustl.edu	37	chr8	86047157	86047157	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttatttgggctcaacgaaaaGaaaatgagtcttcctcttta	7	7	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	86047157	86047157	G	C	SNP	LRRCC1	ENST00000360375	human	ensembl	69_37n	1	known	missense	c.2044	p.E682Q	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	131	0	0	105	15	12.5	-	-	-	C	86047157	G	C	86047157	3	2	78	1	0	0	0	0	1	0	0	0	9092	943	33	2	2094	2	LRRCC1	8	86047157	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	12567140	86047157	60316865	84	5329										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885220	88885220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggcccacggccgccacgactCcttcttcttcgttcacatgc	8	18	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	88885220	88885220	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.980	p.G327E	0.995	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	138	0	0	105	15	12.5	-	-	-	T	88885220	C	T	88885220	3	4	78	1	0	0	0	0	1	0	0	0	4304	855	30	2	211	2	DCAF4L2	8	88885220	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	2838063	88885220	57478802	85	5330										
VPS13B	0	genome.wustl.edu	37	chr8	100729481	100729481	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaagaaagaagccgcattctGataggaccatgttgtgctac	10	8	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	100729481	100729481	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.6612	p.L2204	0.578	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	124	0	0	87	11	11.22	-	-	-	A	100729481	G	A	100729481	2	1	78	1	0	0	0	0	0	0	0	1	17287	1277	45	2		2	VPS13B	8	100729481	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	11844261	100729481	45634541	86	5331										
DENND3	0	genome.wustl.edu	37	chr8	142166000	142166000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcatgggagcatcacctactCcaagtccacggacgataacg	9	13	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	8	142166000	142166000	C	G	SNP	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	missense	c.887	p.S296C	0.681	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	114	0	0	93	15	13.89	-	-	-	G	142166000	C	G	142166000	3	3	78	1	0	0	0	0	1	0	0	0	4468	855	30	2	913	2	DENND3	8	142166000	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	41436519	142166000	4198022	87	5332										
GLIS3	0	genome.wustl.edu	37	chr9	4117903	4117903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcccctttgcgctggtcgatGtggaccttctcgatgtgccg	12	13	1	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	9	4117903	4117903	G	A	SNP	GLIS3	ENST00000381971	human	ensembl	69_37n	-1	known	silent	c.1575	p.H525	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249	109	0	0	91	13	12.5	-	-	-	A	4117903	G	A	4117903	2	1	78	1	0	0	0	0	0	0	0	1	6499	1368	48	4		4	GLIS3	9	4117903	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		4117903	137095528	88	5333										
FRMPD1	0	genome.wustl.edu	37	chr9	37735702	37735702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aagagtctgagaaagtgagcGtcgtcaaagtgtatcttcag	12	6	4	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	9	37735702	37735702	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.1372	p.V458I	0.999	pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	108	0	0	76	11	12.64	-	-	-	A	37735702	G	A	37735702	3	1	78	1	0	0	0	0	1	0	0	0	6106	1145	40	1	1418	1	FRMPD1	9	37735702	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	33617799	37735702	103477729	89	5334										
TLR4	0	genome.wustl.edu	37	chr9	120476002	120476002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aatatgagccacaacaacttCttttcattggatacgtttcc	5	10	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	9	120476002	120476002	C	G	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.1596	p.F532L	0.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	186	0	0	132	16	10.81	-	-	-	G	120476002	C	G	120476002	3	3	78	1	0	0	0	0	1	0	0	0	16048	912	32	2	1606	2	TLR4	9	120476002	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	82740300	120476002	20737429	90	5335										
AKR1C2	0	genome.wustl.edu	37	chr10	5038048	5038048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tctctggttgaagtaaggatGacattccacctgcagacgag	11	9	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	5038048	5038048	G	C	SNP	AKR1C2	ENST00000380753	human	ensembl	69_37n	-1	known	missense	c.580	p.H194D	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C2	HGNC	ENSG00000151632	127	0	0	94	16	14.55	-	-	-	C	5038048	G	C	5038048	3	2	78	1	0	0	0	0	1	0	0	0	470	1290	45	2	407	2	AKR1C2	10	5038048	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		5038048	130496699	91	5336										
ECHDC3	0	genome.wustl.edu	37	chr10	11789450	11789450	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gacgctgacagcaacgatctGaaagtcattatcatctcggg	10	10	4	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	11789450	11789450	G	C	SNP	ECHDC3	ENST00000379215	human	ensembl	69_37n	1	known	silent	c.273	p.L91	0.984	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC3	HGNC	ENSG00000134463	80	0	0	58	11	15.94	-	-	-	C	11789450	G	C	11789450	2	2	78	1	0	0	0	0	0	0	0	1	4930	1277	45	2		2	ECHDC3	10	11789450	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	6751402	11789450	123745297	92	5337										
DCLRE1C	0	genome.wustl.edu	37	chr10	14951176	14951176	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agctctgcatacactctgctCtgcagcatcctggggtttgt	10	12	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	14951176	14951176	C	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.1310	p.R437T	0.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	165	1	0.6	138	21	13.21	-	-	-	G	14951176	C	G	14951176	3	3	78	1	0	0	0	0	1	0	0	0	4327	913	32	2	772	2	DCLRE1C	10	14951176	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3161726	14951176	120583571	93	5338										
BMI1	0	genome.wustl.edu	37	chr10	22616543	22616543	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggtcagataaaactctccaaGatattgtatacaaattagtt	6	6	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	22616543	22616543	G	C	SNP	BMI1	ENST00000376663	human	ensembl	69_37n	1	known	missense	c.229	p.D77H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283	87	0	0	75	10	11.76	-	-	-	C	22616543	G	C	22616543	3	2	78	1	0	0	0	0	1	0	0	0	1460	942	33	2	239	2	BMI1	10	22616543	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	7665367	22616543	112918204	94	5339										
ANKRD26	0	genome.wustl.edu	37	chr10	27342293	27342293	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttccctttcttgctcttcttCtgatgctacttctaagtcat	4	12	6	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	27342293	27342293	C	G	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.1639	p.E547Q	0.011	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	308	0	0	270	37	12.05	-	-	-	G	27342293	C	G	27342293	3	3	78	1	0	0	0	0	1	0	0	0	654	922	32	2	3617	2	ANKRD26	10	27342293	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	4725750	27342293	108192454	95	5340										
AIFM2	0	genome.wustl.edu	37	chr10	71874694	71874694	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acccggcttgtaggcctggaGaggccgctgcttcacagagt	14	12	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	71874694	71874694	G	C	SNP	AIFM2	ENST00000307864	human	ensembl	69_37n	-1	known	missense	c.952	p.L318V	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286	69	0	0	40	5	11.11	-	-	-	C	71874694	G	C	71874694	3	2	78	1	0	0	0	0	1	0	0	0	427	942	33	2	177	2	AIFM2	10	71874694	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	44532401	71874694	63660053	96	5341										
PPA1	0	genome.wustl.edu	37	chr10	71969403	71969403	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaaccagtccacagtagcttCtaagtagccaggtttcagcc	8	12	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	71969403	71969403	C	T	SNP	PPA1	ENST00000373232	human	ensembl	69_37n	-1	known	missense	c.550	p.E184K	1.000	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA1	HGNC	ENSG00000180817	200	0	0	135	19	12.34	-	-	-	T	71969403	C	T	71969403	3	4	78	1	0	0	0	0	1	0	0	0	12359	922	32	2	339	2	PPA1	10	71969403	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	94709	71969403	63565344	97	5342										
PAPSS2	0	genome.wustl.edu	37	chr10	89474611	89474611	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	caccaggtagtggaacttctGcaagagcaggtaggtgaacc	13	9	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	10	89474611	89474611	G	A	SNP	PAPSS2	ENST00000456849	human	ensembl	69_37n	1	known	silent	c.630	p.L210	1.000	tigrfam_APS_kinase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	224	2	0.88	150	17	10.18	-	-	-	A	89474611	G	A	89474611	2	1	78	1	0	0	0	0	0	0	0	1	11508	1306	46	4		4	PAPSS2	10	89474611	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	17505208	89474611	46060136	98	5343										
ST5	0	genome.wustl.edu	37	chr11	8728716	8728716	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gactccatgagacttctcatGaaaggatagaccaatgcagc	9	10	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	8728716	8728716	G	A	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	silent	c.2487	p.F829	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	131	1	0.76	107	18	14.4	-	-	-	A	8728716	G	A	8728716	2	1	78	1	0	0	0	0	0	0	0	1	15311	1281	45	2		2	ST5	11	8728716	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		8728716	126277800	99	5344										
PLEKHA7	0	genome.wustl.edu	37	chr11	16810673	16810673	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tctccagggagcggccggctGaggtagcgagatgagggcag	19	9	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	16810673	16810673	G	A	SNP	PLEKHA7	ENST00000530489	human	ensembl	69_37n	-1	known	missense	c.2222	p.S741L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHA7	HGNC	ENSG00000166689	56	0	0	43	6	12.24	-	-	-	A	16810673	G	A	16810673	3	1	78	1	0	0	0	0	1	0	0	0	12135	1277	45	2	42	2	PLEKHA7	11	16810673	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	8081957	16810673	118195843	100	5345										
SLC17A6	0	genome.wustl.edu	37	chr11	22397575	22397575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tggtcgttggctattctcatActagaggggtagcaatctca	11	8	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	22397575	22397575	A	G	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	missense	c.1222	p.T408A	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	245	2	0.8	171	21	10.94	-	-	-	G	22397575	A	G	22397575	3	3	78	1	0	0	0	0	1	0	0	0	14510	391	14	5	1260	5	SLC17A6	11	22397575	Missense_Mutation	SNP	A	TCGA-A2-A0YK-01A-22D-A117-09	5586902	22397575	112608941	101	5346										
CKAP5	0	genome.wustl.edu	37	chr11	46786748	46786748	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	caacaataaaaataggcccgGatttgtcttcatcctccttt	5	11	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	46786748	46786748	G	C	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.3470	p.S1157C	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	332	0	0	304	39	11.34	-	-	-	C	46786748	G	C	46786748	3	2	78	1	0	0	0	0	1	0	0	0	3475	1174	41	2	2696	2	CKAP5	11	46786748	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	24389173	46786748	88219768	102	5347										
MADD	0	genome.wustl.edu	37	chr11	47300612	47300612	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gaaccagaatcactagagctGaaaaagcatttaaagcaggt	9	7	1	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	47300612	47300612	G	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	silent	c.1272	p.L424	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	158	0	0	95	16	14.41	-	-	-	T	47300612	G	T	47300612	2	4	78	1	0	0	0	0	0	0	0	1	9219	1277	45	2		2	MADD	11	47300612	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	513864	47300612	87705904	103	5348										
OR4B1	0	genome.wustl.edu	37	chr11	48238979	48238979	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aacagtggattattctctgtCttctccttcctcatcttggt	6	11	5	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	48238979	48238979	C	G	SNP	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	silent	c.618	p.V206	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	136	1	0.72	104	15	12.61	-	-	-	G	48238979	C	G	48238979	2	3	78	1	0	0	0	0	0	0	0	1	11117	900	32	2		2	OR4B1	11	48238979	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	938367	48238979	86767537	104	5349										
OR8H1	0	genome.wustl.edu	37	chr11	56058164	56058164	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gggtaacgtagaggactgcaGatagctacgtagcgatcata	13	7	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	56058164	56058164	G	A	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	silent	c.375	p.I125	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	160	0	0	115	16	12.12	-	-	-	A	56058164	G	A	56058164	2	1	78	1	0	0	0	0	0	0	0	1	11310	932	33	2		2	OR8H1	11	56058164	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	7819185	56058164	78948352	105	5350										
CPSF7	0	genome.wustl.edu	37	chr11	61187439	61187439	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acgtttccgagcctgtgcctCaaactgtgacaggttctgcc	10	13	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	61187439	61187439	C	T	SNP	CPSF7	ENST00000340437	human	ensembl	69_37n	-1	known	missense	c.634	p.E212K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF7	HGNC	ENSG00000149532	191	0	0	131	16	10.88	-	-	-	T	61187439	C	T	61187439	3	4	78	1	0	0	0	0	1	0	0	0	3860	835	29	2	930	2	CPSF7	11	61187439	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	5129275	61187439	73819077	106	5351										
AHNAK	0	genome.wustl.edu	37	chr11	62297871	62297871	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggcaaggacacatccacatCtcccttcaattttggcccct	6	15	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	62297871	62297871	C	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.4018	p.D1340H	0.950	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	364	0	0	243	44	15.33	-	-	-	G	62297871	C	G	62297871	3	3	78	1	0	0	0	0	1	0	0	0	414	913	32	2	13774	2	AHNAK	11	62297871	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1110432	62297871	72708645	107	5352										
AHNAK	0	genome.wustl.edu	37	chr11	62297991	62297991	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cagctttccttccgggccctCaaggctcacatctgggactt	9	15	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	62297991	62297991	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.3898	p.E1300K	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	256	0	0	170	26	13.27	-	-	-	T	62297991	C	T	62297991	3	4	78	1	0	0	0	0	1	0	0	0	414	835	29	2	13894	2	AHNAK	11	62297991	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	120	62297991	72708525	108	5353										
SF1	0	genome.wustl.edu	37	chr11	64534715	64534715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcccacaggcgtacttcccaGgtactgatcttgatggaagg	12	11	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	64534715	64534715	G	A	SNP	SF1	ENST00000377394	human	ensembl	69_37n	-1	known	missense	c.1355	p.P452L	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	127	0	0	81	14	14.74	-	-	-	A	64534715	G	A	64534715	3	1	78	1	0	0	0	0	1	0	0	0	14233	1000	35	4	714	4	SF1	11	64534715	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	2236724	64534715	70471801	109	5354										
KCNK7	0	genome.wustl.edu	37	chr11	65360593	65360593	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtcacaggaccactgggtctGaagaacttccccatggcacg	11	13	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	65360593	65360593	G	C	SNP	KCNK7	ENST00000340313	human	ensembl	69_37n	-1	known	missense	c.807	p.F269L	0.410	pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TWIK	-	no_errors	KCNK7	HGNC	ENSG00000173338	73	0	0	49	10	16.95	-	-	-	C	65360593	G	C	65360593	3	2	78	1	0	0	0	0	1	0	0	0	8125	1281	45	2	120	2	KCNK7	11	65360593	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	825878	65360593	69645923	110	5355										
PITPNM1	0	genome.wustl.edu	37	chr11	67265000	67265000	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gcagggacgtcacctgttctGagagccctcgggctcaggac	14	13	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	67265000	67265000	G	C	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.1933	p.Q645E	0.785	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	56	0	0	59	8	11.94	-	-	-	C	67265000	G	C	67265000	3	2	78	1	0	0	0	0	1	0	0	0	12024	1299	45	2	1849	2	PITPNM1	11	67265000	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	1904407	67265000	67741516	111	5356										
C11orf30	0	genome.wustl.edu	37	chr11	76255449	76255449	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcacagtcagctaaacagcaGaaacttagccagcccccgct	7	15	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	76255449	76255449	G	C	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.2856	p.Q952H	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	51	0	0	45	9	16.67	-	-	-	C	76255449	G	C	76255449	3	2	78	1	0	0	0	0	1	0	0	0	1647	933	33	2	2926	2	C11orf30	11	76255449	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	8990449	76255449	58751067	112	5357										
FAM76B	0	genome.wustl.edu	37	chr11	95521679	95521679	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaacctctcttgttgaaattCtgatctgcagtaagtacatt	6	8	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	95521679	95521679	C	T	SNP	FAM76B	ENST00000358780	human	ensembl	69_37n	-1	known	missense	c.136	p.E46K	1.000	NULL	NULL	-	no_errors	FAM76B	HGNC	ENSG00000077458	162	0	0	96	11	10.28	-	-	-	T	95521679	C	T	95521679	3	4	78	1	0	0	0	0	1	0	0	0	5670	922	32	2	919	2	FAM76B	11	95521679	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	19266230	95521679	39484837	113	5358										
ATM	0	genome.wustl.edu	37	chr11	108200998	108200998	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gaattagccctgcgtgcactGaaagaggatcgtaaacgctt	11	9	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	108200998	108200998	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	silent	c.7365	p.L2455	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	187	1	0.53	125	24	16.11	-	-	-	A	108200998	G	A	108200998	2	1	78	1	0	0	0	0	0	0	0	1	1113	1277	45	2		2	ATM	11	108200998	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	12679319	108200998	26805518	114	5359										
ATM	0	genome.wustl.edu	37	chr11	108206578	108206578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	taattattctgaagggccgtGatgacctgagacaagatgct	11	7	1	5			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	108206578	108206578	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.8158	p.D2720N	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	146	1	0.67	80	13	13.98	-	-	-	A	108206578	G	A	108206578	3	1	78	1	0	0	0	0	1	0	0	0	1113	1290	45	2	8376	2	ATM	11	108206578	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	5580	108206578	26799938	115	5360										
SIDT2	0	genome.wustl.edu	37	chr11	117052583	117052583	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctgtgtcagccccccaccaaGaatgagtcggagattcagtt	10	12	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	117052583	117052583	G	A	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.366	p.K122	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	127	0	0	89	10	10.1	-	-	-	A	117052583	G	A	117052583	2	1	78	1	0	0	0	0	0	0	0	1	14392	933	33	2		2	SIDT2	11	117052583	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	8846005	117052583	17953933	116	5361										
FEZ1	0	genome.wustl.edu	37	chr11	125351488	125351488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttggatccctccagtcttctGagagtgaagggatgtaattg	12	7	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	11	125351488	125351488	G	A	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	missense	c.353	p.S118L	0.247	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	197	0	0	119	17	12.5	-	-	-	A	125351488	G	A	125351488	3	1	78	1	0	0	0	0	1	0	0	0	5869	1294	45	2	857	2	FEZ1	11	125351488	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	8298905	125351488	9655028	117	5362										
CHD4	0	genome.wustl.edu	37	chr12	6702638	6702638	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	attgtcttcaaaggagaactCattctctcggatgatggcac	9	9	4	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	6702638	6702638	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2458	p.E820K	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	149	1	0.67	84	18	17.65	-	-	-	T	6702638	C	T	6702638	3	4	78	1	0	0	0	0	1	0	0	0	3356	835	29	2	3380	2	CHD4	12	6702638	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		6702638	127149257	118	5363										
LRRC23	0	genome.wustl.edu	37	chr12	7019087	7019087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tgaagaaggtggaaggcttgGaggatctgagcaatctcacc	14	7	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	7019087	7019087	G	C	SNP	LRRC23	ENST00000007969	human	ensembl	69_37n	1	known	missense	c.655	p.E219Q	1.000	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC23	HGNC	ENSG00000010626	123	0	0	102	13	11.3	-	-	-	C	7019087	G	C	7019087	3	2	78	1	0	0	0	0	1	0	0	0	9044	1175	41	2	673	2	LRRC23	12	7019087	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	316449	7019087	126832808	119	5364										
CCDC65	0	genome.wustl.edu	37	chr12	49298848	49298848	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cataaggacattgagatcctCagccaaacatttgaacgagt	8	9	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	49298848	49298848	C	T	SNP	CCDC65	ENST00000266984	human	ensembl	69_37n	1	known	silent	c.252	p.L84	1.000	NULL	NULL	-	no_errors	CCDC65	HGNC	ENSG00000139537	137	0	0	76	17	18.28	-	-	-	T	49298848	C	T	49298848	2	4	78	1	0	0	0	0	0	0	0	1	2864	813	29	2		2	CCDC65	12	49298848	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	42279761	49298848	84553047	120	5365										
ESPL1	0	genome.wustl.edu	37	chr12	53666536	53666536	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agtaatttggcctacagcttCtatagtcacaagctctatgc	7	10	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	53666536	53666536	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.1401	p.F467L	1.000	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	167	0	0	117	16	12.03	-	-	-	A	53666536	C	A	53666536	3	1	78	1	0	0	0	0	1	0	0	0	5290	912	32	2	1419	2	ESPL1	12	53666536	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	4367688	53666536	80185359	121	5366										
OR9K2	0	genome.wustl.edu	37	chr12	55524054	55524054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tgtccacacgtctgtgtactCagttggtggctggttcctat	11	10	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	55524054	55524054	C	G	SNP	OR9K2	ENST00000305377	human	ensembl	69_37n	1	known	missense	c.502	p.Q168E	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9K2	HGNC	ENSG00000170605	163	0	0	138	17	10.97	-	-	-	G	55524054	C	G	55524054	3	3	78	1	0	0	0	0	1	0	0	0	11327	827	29	2	504	2	OR9K2	12	55524054	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1857518	55524054	78327841	122	5367										
ZDHHC17	0	genome.wustl.edu	37	chr12	77243248	77243248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acgtctattgaaagcccattCaagtatgtacatatttataa	5	7	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	77243248	77243248	C	G	SNP	ZDHHC17	ENST00000334822	human	ensembl	69_37n	1	known	missense	c.1758	p.F586L	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase,prints_Ankyrin_rpt	-	no_errors	ZDHHC17	HGNC	ENSG00000186908	125	0	0	73	9	10.98	-	-	-	G	77243248	C	G	77243248	3	3	78	1	0	0	0	0	1	0	0	0	17703	825	29	2	1820	2	ZDHHC17	12	77243248	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	21719194	77243248	56608647	123	5368										
PPP1R12A	0	genome.wustl.edu	37	chr12	80190988	80190988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctgttacctcatcatacgttCtggagtacttttgtttatat	6	8	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	80190988	80190988	C	T	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	missense	c.2279	p.R760K	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	465	0	0	427	51	10.67	-	-	-	T	80190988	C	T	80190988	3	4	78	1	0	0	0	0	1	0	0	0	12431	913	32	2	853	2	PPP1R12A	12	80190988	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	2947740	80190988	53660907	124	5369										
KDM2B	0	genome.wustl.edu	37	chr12	121986850	121986850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtctgcttctccttcagatgCtggggccacatgttgtccac	10	13	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	12	121986850	121986850	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	silent	c.615	p.Q205	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	273	1	0.36	229	27	10.55	-	-	-	T	121986850	C	T	121986850	2	4	78	1	0	0	0	0	0	0	0	1	8179	796	28	4		4	KDM2B	12	121986850	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	41795862	121986850	11865045	125	5370										
IPO5	0	genome.wustl.edu	37	chr13	98660331	98660331	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agttcatgcaggatgcatcaGatgtgatgcagcttttgtta	11	6	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	13	98660331	98660331	G	C	SNP	IPO5	ENST00000261574	human	ensembl	69_37n	1	known	missense	c.1789	p.D597H	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150	169	0	0	100	12	10.71	-	-	-	C	98660331	G	C	98660331	3	2	78	1	0	0	0	0	1	0	0	0	7850	942	33	2	1851	2	IPO5	13	98660331	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		98660331	16509547	126	5371										
ARHGEF7	0	genome.wustl.edu	37	chr13	111930018	111930018	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggatgagtggctttatctatCaggtaaaacacaatttaaat	8	5	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	13	111930018	111930018	C	T	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	nonsense	c.1567	p.Q523*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	344	0	0	222	31	12.25	-	-	-	T	111930018	C	T	111930018	4	4	78	1	0	0	0	0	0	1	0	0	913	827	29	2	1621	2	ARHGEF7	13	111930018	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	13269687	111930018	3239860	127	5372										
MYH6	0	genome.wustl.edu	37	chr14	23855274	23855274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	caggttgttgcgccgctccaCgatggcgatgttctccttca	11	13	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	23855274	23855274	C	T	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.5026	p.V1676M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	108	0	0	66	8	10.81	-	-	-	T	23855274	C	T	23855274	3	4	78	1	0	0	0	0	1	0	0	0	10110	536	19	1	817	1	MYH6	14	23855274	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		23855274	83494266	128	5373										
IRF9	0	genome.wustl.edu	37	chr14	24631447	24631447	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttcccggagtgtgctgggatGatacagctaagaccatgttc	12	9	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	24631447	24631447	G	A	SNP	IRF9	ENST00000396864	human	ensembl	69_37n	1	known	missense	c.94	p.D32N	0.967	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	81	0	0	68	13	16.05	-	-	-	A	24631447	G	A	24631447	3	1	78	1	0	0	0	0	1	0	0	0	7891	1290	45	2	96	2	IRF9	14	24631447	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	776173	24631447	82718093	129	5374										
REC8	0	genome.wustl.edu	37	chr14	24642177	24642177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggcctgccgcggccccgcttCtccctctatctctcagccca	8	21	4	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	24642177	24642177	C	G	SNP	REC8	ENST00000311457	human	ensembl	69_37n	1	known	missense	c.195	p.F65L	1.000	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	96	0	0	43	6	12.24	-	-	-	G	24642177	C	G	24642177	3	3	78	1	0	0	0	0	1	0	0	0	13282	912	32	2	205	2	REC8	14	24642177	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	10730	24642177	82707363	130	5375										
C14orf37	0	genome.wustl.edu	37	chr14	58604848	58604848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tttggagcaagttcacaatgGaaactttcatgtcttccatc	7	9	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	58604848	58604848	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.1229	p.S410F	0.002	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	99	0	0	77	12	13.48	-	-	-	A	58604848	G	A	58604848	3	1	78	1	0	0	0	0	1	0	0	0	1783	1174	41	2	1123	2	C14orf37	14	58604848	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	33962671	58604848	48744692	131	5376										
FAM161B	0	genome.wustl.edu	37	chr14	74409190	74409190	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tttctcttcttttggctgctCttctctggaaggccttgtaa	8	10	4	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	74409190	74409190	C	G	SNP	FAM161B	ENST00000286544	human	ensembl	69_37n	-1	known	missense	c.1343	p.R448T	0.486	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050	238	0	0	187	28	13.02	-	-	-	G	74409190	C	G	74409190	3	3	78	1	0	0	0	0	1	0	0	0	5513	913	32	2	813	2	FAM161B	14	74409190	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	15804342	74409190	32940350	132	5377										
POMT2	0	genome.wustl.edu	37	chr14	77751976	77751976	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tttgagtcccctgttccattCtgccataaaagccaagaaaa	6	11	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	77751976	77751976	C	G	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	splice_site	c.1333-1	e13-1	1.000	-	-	-	no_errors	POMT2	HGNC	ENSG00000009830	70	0	0	47	8	14.55	-	-	-	G	77751976	C	G	77751976	5	3	78	1	0	0	0	0	0	0	1	0	12320	927	32	2	956	2	POMT2	14	77751976	Splice_Site	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	3342786	77751976	29597564	133	5378										
TSHR	0	genome.wustl.edu	37	chr14	81606069	81606069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cccttccatccaaaggcctgGagcacctgaaggaactgata	9	13	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	14	81606069	81606069	G	A	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.739	p.E247K	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	124	0	0	70	15	17.65	-	-	-	A	81606069	G	A	81606069	3	1	78	1	0	0	0	0	1	0	0	0	16718	1175	41	2	910	2	TSHR	14	81606069	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	3854093	81606069	25743471	134	5379										
RYR3	0	genome.wustl.edu	37	chr15	33927951	33927951	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gacatgcgagtcggctgggcGaggccaggctgtcgacctga	17	11	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	15	33927951	33927951	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.3312	p.A1104	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	169	0	0	125	17	11.97	-	-	-	A	33927951	G	A	33927951	2	1	78	1	0	0	0	0	0	0	0	1	13856	1045	37	1		1	RYR3	15	33927951	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		33927951	68603441	135	5380										
TGM5	0	genome.wustl.edu	37	chr15	43525482	43525482	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tggatctgcctttgtccactCttgaaggggacggtctccag	12	11	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	15	43525482	43525482	C	A	SNP	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	missense	c.2070	p.K690N	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	331	1	0.3	240	29	10.78	-	-	-	A	43525482	C	A	43525482	3	1	78	1	0	0	0	0	1	0	0	0	15928	912	32	2	96	2	TGM5	15	43525482	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	9597531	43525482	59005910	136	5381										
UNC13C	0	genome.wustl.edu	37	chr15	54305910	54305910	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cgagggcacgtcaatgctctCaagcactccatcgatgagat	10	12	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	15	54305910	54305910	C	G	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.810	p.L270	0.992	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	61	0	0	37	9	19.57	-	-	-	G	54305910	C	G	54305910	2	3	78	1	0	0	0	0	0	0	0	1	17083	813	29	2		2	UNC13C	15	54305910	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	10780428	54305910	48225482	137	5382										
NR2E3	0	genome.wustl.edu	37	chr15	72109926	72109926	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctcctgctcctcccgtctttGaggtttatcactgcggaacg	9	14	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	15	72109926	72109926	G	C	SNP	NR2E3	ENST00000326995	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NR2E3	HGNC	ENSG00000031544	116	0	0	81	16	16.49	-	-	-	C	72109926	G	C	72109926	1	2	78	0	1	0	0	0	0	0	0	0	10699	1281	45	2		2	NR2E3	15	72109926	RNA	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	17804016	72109926	30421466	138	5383										
CYP11A1	0	genome.wustl.edu	37	chr15	74631005	74631005	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cccaagttccggaagtaggtGatgttcttgtctttgctcag	11	9	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	15	74631005	74631005	G	A	SNP	CYP11A1	ENST00000268053	human	ensembl	69_37n	-1	known	silent	c.1341	p.I447	0.003	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459	214	0	0	145	25	14.71	-	-	-	A	74631005	G	A	74631005	2	1	78	1	0	0	0	0	0	0	0	1	4175	1280	45	2		2	CYP11A1	15	74631005	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	2521079	74631005	27900387	139	5384										
CORO7	0	genome.wustl.edu	37	chr16	4415517	4415517	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctgccaggaccaggagcccaGagtcagggtccagcagaggc	15	13	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	4415517	4415517	G	T	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	missense	c.815	p.S272Y	0.995	pfam_DUF1900	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	114	0	0	58	12	17.14	-	-	-	T	4415517	G	T	4415517	3	4	78	1	0	0	0	0	1	0	0	0	3789	942	33	2	2038	2	CORO7	16	4415517	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		4415517	85939236	140	5385										
GPR114	0	genome.wustl.edu	37	chr16	57601828	57601828	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	catgcctccgtgctgctcctGaacatcgccttcctgctgag	9	16	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	57601828	57601828	G	A	SNP	GPR114	ENST00000340339	human	ensembl	69_37n	1	known	silent	c.882	p.L294	0.995	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	84	0	0	66	8	10.81	-	-	-	A	57601828	G	A	57601828	2	1	78	1	0	0	0	0	0	0	0	1	6681	1277	45	2		2	GPR114	16	57601828	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	53186311	57601828	32752925	141	5386										
CDH1	0	genome.wustl.edu	37	chr16	68835596	68835596	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	attttgaagattgcaccggtCgacaaaggacagcctatttt	9	8	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	68835596	68835596	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.187	p.R63*	0.175	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	208	0	0	120	18	13.04	-	-	-	T	68835596	C	T	68835596	4	4	78	1	0	0	0	0	0	1	0	0	3124	876	31	1	197	1	CDH1	16	68835596	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	11233768	68835596	21519157	142	5387										
NFAT5	0	genome.wustl.edu	37	chr16	69726330	69726330	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctggaatgttttcctcaacaGagccaacagtccataccaga	7	12	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	69726330	69726330	G	C	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	missense	c.2602	p.E868Q	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	143	0	0	65	13	16.67	-	-	-	C	69726330	G	C	69726330	3	2	78	1	0	0	0	0	1	0	0	0	10432	943	33	2	2652	2	NFAT5	16	69726330	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	890734	69726330	20628423	143	5388										
ZNF778	0	genome.wustl.edu	37	chr16	89293913	89293913	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaaatattttagaaattcctCatgccttaataatcatgttc	3	7	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	89293913	89293913	C	T	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	missense	c.1133	p.S378L	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	162	1	0.6	121	15	11.03	-	-	-	T	89293913	C	T	89293913	3	4	78	1	0	0	0	0	1	0	0	0	18244	838	29	2	1151	2	ZNF778	16	89293913	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	19567583	89293913	1060840	144	5389										
ANKRD11	0	genome.wustl.edu	37	chr16	89351969	89351969	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gggttcttggccttgtgcttGaggcctttttcgaactcgga	13	9	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	16	89351969	89351969	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	silent	c.981	p.L327	0.632	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	228	1	0.43	149	26	14.86	-	-	-	A	89351969	G	A	89351969	2	1	78	1	0	0	0	0	0	0	0	1	639	1277	45	2		2	ANKRD11	16	89351969	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	58056	89351969	1002784	145	5390										
SMCR7	0	genome.wustl.edu	37	chr17	18167940	18167940	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	caagccctggagctgctcatCggcagcctggagcaggccag	14	14	1	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	18167940	18167940	C	T	SNP	SMCR7	ENST00000323019	human	ensembl	69_37n	1	known	silent	c.1227	p.I409	0.005	NULL	NULL	-	no_errors	SMCR7	HGNC	ENSG00000177427	30	0	0	18	4	18.18	-	-	-	T	18167940	C	T	18167940	2	4	78	1	0	0	0	0	0	0	0	1	14879	874	31	1		1	SMCR7	17	18167940	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		18167940	63027270	146	5391										
NF1	0	genome.wustl.edu	37	chr17	29546065	29546065	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aaacccaaggcagtacagcaGaattaattacagggctcgtc	9	10	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	29546065	29546065	G	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.1570	p.E524Q	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	147	0	0	68	11	13.92	-	-	-	C	29546065	G	C	29546065	3	2	78	1	0	0	0	0	1	0	0	0	10428	943	33	2	1624	2	NF1	17	29546065	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	11378125	29546065	51649145	147	5392										
SLFN5	0	genome.wustl.edu	37	chr17	33592664	33592664	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gacaggcttctaacagcaatGaggaagagaaaactgtctca	10	8	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	33592664	33592664	G	A	SNP	SLFN5	ENST00000299977	human	ensembl	69_37n	1	known	missense	c.2433	p.M811I	0.889	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN5	HGNC	ENSG00000166750	117	0	0	69	12	14.81	-	-	-	A	33592664	G	A	33592664	3	1	78	1	0	0	0	0	1	0	0	0	14826	1290	45	2	2447	2	SLFN5	17	33592664	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	4046599	33592664	47602546	148	5393										
AP2B1	0	genome.wustl.edu	37	chr17	33984663	33984663	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggcactaccactgcaacgaaCctggaacagcctcaggttat	9	13	1	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	33984663	33984663	C	T	SNP	AP2B1	ENST00000312678	human	ensembl	69_37n	1	known	silent	c.1842	p.N614	1.000	pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP2B1	HGNC	ENSG00000006125	137	0	0	118	15	11.28	-	-	-	T	33984663	C	T	33984663	2	4	78	1	0	0	0	0	0	0	0	1	742	506	18	4		4	AP2B1	17	33984663	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	391999	33984663	47210547	149	5394										
NPEPPS	0	genome.wustl.edu	37	chr17	45608784	45608784	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ctcgccgccgcctccacagcCtgggcctcgccgcgatgccg	12	21	0	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	45608784	45608784	C	T	SNP	NPEPPS	ENST00000322157	human	ensembl	69_37n	1	known	silent	c.118	p.L40	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279	9	0	0	3	3	50	-	-	-	T	45608784	C	T	45608784	2	4	78	1	0	0	0	0	0	0	0	1	10647	680	24	4		4	NPEPPS	17	45608784	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	11624121	45608784	35586426	150	5395										
KIF2B	0	genome.wustl.edu	37	chr17	51902101	51902101	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggatgttaaaaagtcacatCggaaattcagaaatgtccct	8	7	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	51902101	51902101	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	silent	c.1707	p.I569	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	99	0	0	63	10	13.51	-	-	-	T	51902101	C	T	51902101	2	4	78	1	0	0	0	0	0	0	0	1	8350	874	31	1		1	KIF2B	17	51902101	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	6293317	51902101	29293109	151	5396										
C17orf77	0	genome.wustl.edu	37	chr17	72588661	72588661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggagcaggaggagccaggagGaacccaagcattgaggagct	17	8	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	17	72588661	72588661	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	69_37n	1	known	missense	c.476	p.G159E	0.005	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352	145	0	0	76	13	14.61	-	-	-	A	72588661	G	A	72588661	3	1	78	1	0	0	0	0	1	0	0	0	1898	1174	41	2	478	2	C17orf77	17	72588661	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	20686560	72588661	8606549	152	5397										
ASXL3	0	genome.wustl.edu	37	chr18	31226305	31226305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ccgaggcaaatgcccatggaGaagaaaatggaggtaagtgt	14	6	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	18	31226305	31226305	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.343	p.E115K	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	220	0	0	128	23	15.23	-	-	-	A	31226305	G	A	31226305	3	1	78	1	0	0	0	0	1	0	0	0	1072	943	33	2	357	2	ASXL3	18	31226305	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		31226305	46850943	153	5398										
CPLX4	0	genome.wustl.edu	37	chr18	56985530	56985530	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gaaatagcatgtactcacttCtcctcaatcatttgcttttg	5	10	4	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	18	56985530	56985530	C	G	SNP	CPLX4	ENST00000299721	human	ensembl	69_37n	-1	known	missense	c.165	p.E55D	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX4	HGNC	ENSG00000166569	279	0	0	209	35	14.34	-	-	-	G	56985530	C	G	56985530	3	3	78	1	0	0	0	0	1	0	0	0	3837	912	32	2	329	2	CPLX4	18	56985530	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	25759225	56985530	21091718	154	5399										
CDH19	0	genome.wustl.edu	37	chr18	64221726	64221726	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	attaccacttgagggatcgtCagcatcacttgctgtcacct	8	12	3	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	18	64221726	64221726	C	T	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	missense	c.526	p.D176N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	139	0	0	102	16	13.56	-	-	-	T	64221726	C	T	64221726	3	4	78	1	0	0	0	0	1	0	0	0	3133	826	29	2	1828	2	CDH19	18	64221726	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	7236196	64221726	13855522	155	5400										
GALR1	0	genome.wustl.edu	37	chr18	74962762	74962762	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gccgacctggcctacctgctCttctgcatccccttccaggc	8	19	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	18	74962762	74962762	C	G	SNP	GALR1	ENST00000299727	human	ensembl	69_37n	1	known	silent	c.258	p.L86	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Galnin_1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573	72	0	0	43	7	14	-	-	-	G	74962762	C	G	74962762	2	3	78	1	0	0	0	0	0	0	0	1	6277	900	32	2		2	GALR1	18	74962762	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	10741036	74962762	3114486	156	5401										
LRRC8E	0	genome.wustl.edu	37	chr19	7964304	7964304	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtcacgggctacgccagcttCtgctgcaaccacaccaaggc	10	16	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	7964304	7964304	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	1	known	silent	c.897	p.F299	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	164	0	0	126	15	10.64	-	-	-	T	7964304	C	T	7964304	2	4	78	1	0	0	0	0	0	0	0	1	9091	912	32	2		2	LRRC8E	19	7964304	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		7964304	51164679	157	5402										
MUC16	0	genome.wustl.edu	37	chr19	9091122	9091122	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggaaggaagaataaagtgtCccaaatgatgggtttgtcct	12	5	0	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	9091122	9091122	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.693	p.G231	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	182	1	0.54	154	19	10.98	-	-	-	G	9091122	C	G	9091122	2	3	78	1	0	0	0	0	0	0	0	1	10045	842	30	2		2	MUC16	19	9091122	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	1126818	9091122	50037861	158	5403										
SLC1A6	0	genome.wustl.edu	37	chr19	15082654	15082654	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gatctggcggtaggtgagctGatatgggcgcagggcaaagg	19	6	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	15082654	15082654	G	T	SNP	SLC1A6	ENST00000430939	human	ensembl	69_37n	-1	known	nonsense	c.251	p.S84*	0.883	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	121	0	0	78	10	11.36	-	-	-	T	15082654	G	T	15082654	4	4	78	1	0	0	0	0	0	1	0	0	14525	1299	45	2	1488	2	SLC1A6	19	15082654	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	5991532	15082654	44046329	159	5404										
UNC13A	0	genome.wustl.edu	37	chr19	17780393	17780393	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcaaagcgcgtgtccaggagGatgcggtggaaggtggggtc	19	7	1	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	17780393	17780393	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	silent	c.627	p.I209	0.998	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	73	0	0	49	8	14.04	-	-	-	A	17780393	G	A	17780393	2	1	78	1	0	0	0	0	0	0	0	1	17081	1164	41	2		2	UNC13A	19	17780393	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	2697739	17780393	41348590	160	5405										
GGN	0	genome.wustl.edu	37	chr19	38876804	38876804	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	atgcctccgccagccccgttGaagcggaagtggcgttcagg	14	13	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	38876804	38876804	G	A	SNP	GGN	ENST00000334928	human	ensembl	69_37n	-1	known	silent	c.1098	p.F366	1.000	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168	26	0	0	33	5	13.16	-	-	-	A	38876804	G	A	38876804	2	1	78	1	0	0	0	0	0	0	0	1	6410	1281	45	2		2	GGN	19	38876804	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	21096411	38876804	20252179	161	5406										
NLRP12	0	genome.wustl.edu	37	chr19	54313212	54313212	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tggctcctggtctcctcgttCaggagtccaaacaggaagcg	12	12	2	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	19	54313212	54313212	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	silent	c.1701	p.L567	0.469	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	42	0	0	36	7	16.28	-	-	-	T	54313212	C	T	54313212	2	4	78	1	0	0	0	0	0	0	0	1	10546	813	29	2		2	NLRP12	19	54313212	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	15436408	54313212	4815771	162	5407										
ATRN	0	genome.wustl.edu	37	chr20	3540081	3540081	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gtggcttccactaaaccgttCtgtgaacaatgtggttgtta	10	8	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	20	3540081	3540081	C	T	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.1154	p.S385F	0.998	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	339	0	0	267	33	11	-	-	-	T	3540081	C	T	3540081	3	4	78	1	0	0	0	0	1	0	0	0	1210	913	32	2	1180	2	ATRN	20	3540081	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09		3540081	59485439	163	5408										
PLCB4	0	genome.wustl.edu	37	chr20	9370583	9370583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	catcagaatatcctgtaattCtctcctttgaaaatcactgc	4	11	3	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	20	9370583	9370583	C	G	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.1216	p.L406V	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	212	0	0	140	19	11.95	-	-	-	G	9370583	C	G	9370583	3	3	78	1	0	0	0	0	1	0	0	0	12104	913	32	2	1266	2	PLCB4	20	9370583	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	5830502	9370583	53654937	164	5409										
RALGAPB	0	genome.wustl.edu	37	chr20	37202806	37202806	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcttaagatctacaactcttGaaaaagaagttcctgtcatc	5	9	4	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	20	37202806	37202806	G	C	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.4156	p.E1386Q	1.000	pfscan_Rap_GAP	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	173	1	0.56	100	13	11.5	-	-	-	C	37202806	G	C	37202806	3	2	78	1	0	0	0	0	1	0	0	0	13098	1291	45	2	4266	2	RALGAPB	20	37202806	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	27832223	37202806	25822714	165	5410										
R3HDML	0	genome.wustl.edu	37	chr20	42972038	42972038	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	taccggtccgtagtggatctCatgaagtcctggtctgagga	13	9	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	20	42972038	42972038	C	T	SNP	R3HDML	ENST00000217043	human	ensembl	69_37n	1	known	silent	c.402	p.L134	0.012	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074	89	0	0	65	8	10.96	-	-	-	T	42972038	C	T	42972038	2	4	78	1	0	0	0	0	0	0	0	1	12972	813	29	2		2	R3HDML	20	42972038	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	5769232	42972038	20053482	166	5411										
YTHDF1	0	genome.wustl.edu	37	chr20	61835143	61835143	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acaggtaggggtcgctcattGaggggtaactgttactctgc	14	8	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	20	61835143	61835143	G	C	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	nonsense	c.149	p.S50*	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	131	0	0	94	11	10.48	-	-	-	C	61835143	G	C	61835143	4	2	78	1	0	0	0	0	0	1	0	0	17595	1294	45	2	1538	2	YTHDF1	20	61835143	Nonsense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	18863105	61835143	1190377	167	5412										
CCT8	0	genome.wustl.edu	37	chr21	30434457	30434457	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gctgatactgacccttgtaaGaactttgaaagtattaacac	7	8	0	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	21	30434457	30434457	G	C	SNP	CCT8	ENST00000286788	human	ensembl	69_37n	-1	known	missense	c.1204	p.L402V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_theta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	-	no_errors	CCT8	HGNC	ENSG00000156261	275	0	0	177	22	11.06	-	-	-	C	30434457	G	C	30434457	3	2	78	1	0	0	0	0	1	0	0	0	2989	942	33	2	462	2	CCT8	21	30434457	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		30434457	17695438	168	5413										
GRIK1	0	genome.wustl.edu	37	chr21	30925922	30925922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttcgaatccctctctcctctCgaattaatttaccacattct	2	14	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	21	30925922	30925922	C	T	SNP	GRIK1	ENST00000309434	human	ensembl	69_37n	-1	known	missense	c.2717	p.R906Q	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	147	0	0	95	17	15.18	-	-	-	T	30925922	C	T	30925922	3	4	78	1	0	0	0	0	1	0	0	0	6824	884	31	1	209	1	GRIK1	21	30925922	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	491465	30925922	17203973	169	5414										
ETS2	0	genome.wustl.edu	37	chr21	40194639	40194639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	aggaaaaataagcccaagatGaactacgagaagctgagccg	11	8	0	4			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	21	40194639	40194639	G	C	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.1236	p.M412I	1.000	pfam_Ets,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	129	0	0	90	18	16.51	-	-	-	C	40194639	G	C	40194639	3	2	78	1	0	0	0	0	1	0	0	0	5313	1290	45	2	1270	2	ETS2	21	40194639	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	9268717	40194639	7935256	170	5415										
HIRA	0	genome.wustl.edu	37	chr22	19344476	19344476	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	agcctgtgcaatgcaaagtaGagatcggggatggcaggagg	17	6	0	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	22	19344476	19344476	G	C	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	missense	c.2333	p.S778C	1.000	pfam_Hira	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	198	0	0	131	18	12.08	-	-	-	C	19344476	G	C	19344476	3	2	78	1	0	0	0	0	1	0	0	0	7171	942	33	2	748	2	HIRA	22	19344476	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		19344476	31960090	171	5416										
SUSD2	0	genome.wustl.edu	37	chr22	24583679	24583679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcaaccccagcctggcacaaGaggcagccaaactatgtggg	11	13	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	22	24583679	24583679	G	C	SNP	SUSD2	ENST00000358321	human	ensembl	69_37n	1	known	missense	c.2032	p.E678Q	0.150	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Complement_control_module,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994	177	0	0	120	16	11.76	-	-	-	C	24583679	G	C	24583679	3	2	78	1	0	0	0	0	1	0	0	0	15499	943	33	2	2078	2	SUSD2	22	24583679	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	5239203	24583679	26720887	172	5417										
TRIOBP	0	genome.wustl.edu	37	chr22	38131375	38131375	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gaggaccagcgaccgcaactCtggcaggcctggagcagacg	15	13	1	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	22	38131375	38131375	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	silent	c.5032	p.L1678	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	43	0	0	24	6	20	-	-	-	T	38131375	C	T	38131375	2	4	78	1	0	0	0	0	0	0	0	1	16649	912	32	2		2	TRIOBP	22	38131375	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	13547696	38131375	13173191	173	5418										
TTLL1	0	genome.wustl.edu	37	chr22	43464475	43464475	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	gagagcttgttgataaggaaGatgccctttccctgggcctt	12	9	0	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	22	43464475	43464475	G	C	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	missense	c.444	p.I148M	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	107	0	0	73	12	14.12	-	-	-	C	43464475	G	C	43464475	3	2	78	1	0	0	0	0	1	0	0	0	16819	932	33	2	855	2	TTLL1	22	43464475	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	5333100	43464475	7840091	174	5419										
MSL3	0	genome.wustl.edu	37	chrX	11778559	11778559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	cagaagatcatgtgcttcgtGataccgatgaaaatcgtaga	10	7	1	5			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	11778559	11778559	G	A	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	missense	c.223	p.D75N	1.000	superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	133	0	0	85	12	12.37	-	-	-	A	11778559	G	A	11778559	3	1	78	1	0	0	0	0	1	0	0	0	9951	1290	45	2	233	2	MSL3	23	11778559	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09		11778559	143492001	175	5420										
CXorf58	0	genome.wustl.edu	37	chrX	23934361	23934361	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ggtgaaacgtttccacctttCatcgtgtttaaaatttttct	6	8	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	23934361	23934361	C	A	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.339	p.F113L	0.996	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	255	0	0	182	22	10.78	-	-	-	A	23934361	C	A	23934361	3	1	78	1	0	0	0	0	1	0	0	0	4145	825	29	2	353	2	CXorf58	23	23934361	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	12155802	23934361	131336199	176	5421										
RPGR	0	genome.wustl.edu	37	chrX	38146055	38146055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	ttctccttctccatgctcctCctcccctccctcctccatct	1	23	3	0			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	38146055	38146055	C	T	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.2197	p.E733K	0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	480	0	0	483	55	10.2	-	-	-	T	38146055	C	T	38146055	3	4	78	1	0	0	0	0	1	0	0	0	13634	864	30	2	1824	2	RPGR	23	38146055	Missense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	14211694	38146055	117124505	177	5422										
DDX3X	0	genome.wustl.edu	37	chrX	41204737	41204737	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	acctctgaaaacatcacacaGaaagtagtttgggtggaaga	10	7	2	3			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	41204737	41204737	G	A	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	silent	c.1251	p.Q417	1.000	smart_Helicase_ATP-bd,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	202	1	0.49	148	21	12.35	-	-	-	A	41204737	G	A	41204737	2	1	78	1	0	0	0	0	0	0	0	1	4389	933	33	2		2	DDX3X	23	41204737	Silent	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	3058682	41204737	114065823	178	5423										
KDM5C	0	genome.wustl.edu	37	chrX	53225894	53225894	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tccaggcagaggtgggctttCtcctcccagcgttcagcaat	11	13	2	1			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	53225894	53225894	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.2955	p.E985	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	76	0	0	53	7	11.67	-	-	-	T	53225894	C	T	53225894	2	4	78	1	0	0	0	0	0	0	0	1	8188	912	32	2		2	KDM5C	23	53225894	Silent	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	12021157	53225894	102044666	179	5424										
HDAC8	0	genome.wustl.edu	37	chrX	71715093	71715093	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tcccaggacagcatcattgaGataacaaaaaccagatgctt	7	10	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	71715093	71715093	G	C	SNP	HDAC8	ENST00000373573	human	ensembl	69_37n	-1	known	missense	c.463	p.L155V	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099	178	1	0.55	137	25	15.43	-	-	-	C	71715093	G	C	71715093	3	2	78	1	0	0	0	0	1	0	0	0	7064	942	33	2	736	2	HDAC8	23	71715093	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	18489199	71715093	83555467	180	5425										
MID2	0	genome.wustl.edu	37	chrX	107169922	107169922	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tatgcaattggcattgcctaCaaatcagctccaaagaatga	7	9	1	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	107169922	107169922	C	G	SNP	MID2	ENST00000262843	human	ensembl	69_37n	1	known	nonsense	c.1827	p.Y609*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561	98	0	0	66	8	10.81	-	-	-	G	107169922	C	G	107169922	4	3	78	1	0	0	0	0	0	1	0	0	9649	489	17	4	1865	4	MID2	23	107169922	Nonsense_Mutation	SNP	C	TCGA-A2-A0YK-01A-22D-A117-09	35454829	107169922	48100638	181	5426										
CUL4B	0	genome.wustl.edu	37	chrX	119678470	119678470	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.637362637362637	116	8.77893473684951e-51	4.46107660455487	5.25867579908676	3.79943181818182	0.381038289621895	0.991179622791967	90	tttctgatcacttataatatGagccctaaataactccagtc	4	10	2	2			TCGA-A2-A0YK-01A-22D-A117-09	TCGA-A2-A0YK-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c27f81e-62fb-478c-9cee-8e20db9300f2	134d71cc-c1c7-40b7-9cc1-927b8f6f393d	X	119678470	119678470	G	A	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.1003	p.H335Y	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	80	0	0	76	12	13.64	-	-	-	A	119678470	G	A	119678470	3	1	78	1	0	0	0	0	1	0	0	0	4089	1290	45	2	1798	2	CUL4B	23	119678470	Missense_Mutation	SNP	G	TCGA-A2-A0YK-01A-22D-A117-09	12508548	119678470	35592090	182	5427										
ETNK2	0	genome.wustl.edu	37	chr1	204103702	204103702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	atgagggcccagagagcccaGaagaagtgagacgcctggaa	15	9	0	5			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	1	204103702	204103702	G	C	SNP	ETNK2	ENST00000367201	human	ensembl	69_37n	-1	known	missense	c.1135	p.L379V	1.000	NULL	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	ETNK2	HGNC	ENSG00000143845	99	0	0	82	10	10.87	-	-	-	C	204103702	G	C	204103702	3	2	79	1	0	0	0	0	1	0	0	0	5311	933	33	2	139	2	ETNK2	1	204103702	Missense_Mutation	SNP	G	TCGA-A2-A0YL-01A-21D-A10G-09		204103702	45146919	1	5428										
RGS7	0	genome.wustl.edu	37	chr1	240976995	240976995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	ggtggcaaaagaaacgggtcGtattctaaatactgttccgt	11	7	1	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	1	240976995	240976995	G	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	silent	c.879	p.Y293	0.963	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	179	0	0	122	51	29.31	-	-	-	A	240976995	G	A	240976995	2	1	79	1	0	0	0	0	0	0	0	1	13394	1140	40	1		1	RGS7	1	240976995	Silent	SNP	G	TCGA-A2-A0YL-01A-21D-A10G-09	36873293	240976995	8273626	2	5429										
MAP2	0	genome.wustl.edu	37	chr2	210574677	210574677	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	agcagggaagagtggtacctCaacacccactacccctgggt	11	13	1	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	2	210574677	210574677	C	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	nonsense	c.4772	p.S1591*	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	155	0	0	107	12	10.08	-	-	-	G	210574677	C	G	210574677	4	3	79	1	0	0	0	0	0	1	0	0	9306	838	29	2	4981	2	MAP2	2	210574677	Nonsense_Mutation	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		210574677	32624696	3	5430										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0	110	17	13.39	-	-	-	G	178952085	A	G	178952085	3	3	79	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A0YL-01A-21D-A10G-09		178952085	19070345	4	5431										
MSX2	0	genome.wustl.edu	37	chr5	174156269	174156269	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	ccctggagcgcaagttccgtCagaaacagtacctctccatt	8	14	2	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	5	174156269	174156269	C	T	SNP	MSX2	ENST00000239243	human	ensembl	69_37n	1	known	nonsense	c.487	p.Q163*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149	82	0	0	52	11	17.19	-	-	-	T	174156269	C	T	174156269	4	4	79	1	0	0	0	0	0	1	0	0	9968	827	29	2	493	2	MSX2	5	174156269	Nonsense_Mutation	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		174156269	6758991	5	5432										
ILK	0	genome.wustl.edu	37	chr11	6631001	6631001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	gtgaagtttgctttggacatGgcaaggggcatggccttcct	14	8	0	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	11	6631001	6631001	G	A	SNP	ILK	ENST00000299421	human	ensembl	69_37n	1	known	missense	c.903	p.M301I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333	101	0	0	75	18	19.35	-	-	-	A	6631001	G	A	6631001	3	1	79	1	0	0	0	0	1	0	0	0	7767	1348	47	4	937	4	ILK	11	6631001	Missense_Mutation	SNP	G	TCGA-A2-A0YL-01A-21D-A10G-09		6631001	128375515	6	5433										
EIF5	0	genome.wustl.edu	37	chr14	103803097	103803097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	gttacattgtcaatggatctCatgaggcgaataagctgcaa	10	7	2	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	14	103803097	103803097	C	T	SNP	EIF5	ENST00000216554	human	ensembl	69_37n	1	known	missense	c.238	p.H80Y	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664	174	0	0	165	19	10.27	-	-	-	T	103803097	C	T	103803097	3	4	79	1	0	0	0	0	1	0	0	0	5077	826	29	2	248	2	EIF5	14	103803097	Missense_Mutation	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		103803097	3546443	7	5434										
TRPM2	0	genome.wustl.edu	37	chr21	45833784	45833784	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	ccaacgccaggtgtgaacttCaacccggagcactgcagccc	10	16	1	1			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	21	45833784	45833784	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.2973	p.F991	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	118	0	0	61	12	16	-	-	-	T	45833784	C	T	45833784	2	4	79	1	0	0	0	0	0	0	0	1	16682	825	29	2		2	TRPM2	21	45833784	Silent	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		45833784	2296111	8	5435										
CABIN1	0	genome.wustl.edu	37	chr22	24573575	24573575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	acagctgccagctccaaggcCcccagcagtgggagtgccca	12	16	0	0			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	22	24573575	24573575	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	silent	c.6309	p.A2103	0.970	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	48	0	0	33	6	15.38	-	-	-	T	24573575	C	T	24573575	2	4	79	1	0	0	0	0	0	0	0	1	2553	610	22	4		4	CABIN1	22	24573575	Silent	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		24573575	26730991	9	5436										
TTLL1	0	genome.wustl.edu	37	chr22	43435850	43435850	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	tgctctgggccccagagactGaccctgacggcttctcagct	11	15	2	3			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	22	43435850	43435850	G	C	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	missense	c.1204	p.Q402E	0.847	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	47	0	0	23	4	14.81	-	-	-	C	43435850	G	C	43435850	3	2	79	1	0	0	0	0	1	0	0	0	16819	1299	45	2	71	2	TTLL1	22	43435850	Missense_Mutation	SNP	G	TCGA-A2-A0YL-01A-21D-A10G-09	18862275	43435850	7868716	10	5437										
HSD17B10	0	genome.wustl.edu	37	chrX	53460760	53460760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	ccagaagcacagcagaggctCcctgccccacaagtcgctcc	9	18	0	2			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	53460760	53460760	C	T	SNP	HSD17B10	ENST00000168216	human	ensembl	69_37n	-1	known	missense	c.101	p.G34E	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect,prints_DHB_DH	-	no_errors	HSD17B10	HGNC	ENSG00000072506	43	0	0	29	7	19.44	-	-	-	T	53460760	C	T	53460760	3	4	79	1	0	0	0	0	1	0	0	0	7430	855	30	2	704	2	HSD17B10	23	53460760	Missense_Mutation	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09		53460760	101809800	11	5438										
GABRE	0	genome.wustl.edu	37	chrX	151128423	151128423	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	ttgaaattttcccacttgtaGatcatctcattctcaggata	5	9	3	2			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	151128423	151128423	G	A	SNP	GABRE	ENST00000370328	human	ensembl	69_37n	-1	known	silent	c.672	p.I224	0.249	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287	178	0	0	178	20	10	-	-	-	A	151128423	G	A	151128423	2	1	79	1	0	0	0	0	0	0	0	1	6219	932	33	2		2	GABRE	23	151128423	Silent	SNP	G	TCGA-A2-A0YL-01A-21D-A10G-09	97667663	151128423	4142137	12	5439										
FAM50A	0	genome.wustl.edu	37	chrX	153674859	153674859	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.538461538461538	7	0.00218010400026392	4.73148148148148	8.11111111111111	3.60493827160494	1	1	6	gaggaggaagaagagggaggCgaggaggaagaggaggcggc	24	3	0	3			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	153674859	153674859	C	T	SNP	FAM50A	ENST00000393600	human	ensembl	69_37n	1	known	silent	c.393	p.G131	0.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50A	HGNC	ENSG00000071859	160	0	0	106	21	16.54	-	-	-	T	153674859	C	T	153674859	2	4	79	1	0	0	0	0	0	0	0	1	5623	755	27	1		1	FAM50A	23	153674859	Silent	SNP	C	TCGA-A2-A0YL-01A-21D-A10G-09	2546436	153674859	1595701	13	5440										
KIF1B	0	genome.wustl.edu	37	chr1	10355754	10355754	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gctgagcggcgccaggacatAgtgctgagcggggctcacat	16	11	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	10355754	10355754	A	T	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	silent	c.1569	p.I523	0.989	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	75	0	0	37	9	19.57	-	-	-	T	10355754	A	T	10355754	2	4	80	1	0	0	0	0	0	0	0	1	8336	410	15	5		5	KIF1B	1	10355754	Silent	SNP	A	TCGA-A2-A0YM-01A-11D-A10G-09		10355754	238894867	1	5441										
HIVEP3	0	genome.wustl.edu	37	chr1	42048715	42048715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ccggctggcgcttcagcatcCgggggtgggaggtaaacacg	17	11	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	42048715	42048715	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.1754	p.R585Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	45	0	0	285	83	22.49	-	-	-	T	42048715	C	T	42048715	3	4	80	1	0	0	0	0	1	0	0	0	7239	652	23	1	5490	1	HIVEP3	1	42048715	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	31692961	42048715	207201906	2	5442										
WDR65	0	genome.wustl.edu	37	chr1	43672428	43672428	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gaatgcagatgatagcaaacTgatttctggtggcacagatg	12	6	1	4			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	43672428	43672428	T	C	SNP	WDR65	ENST00000528956	human	ensembl	69_37n	1	known	missense	c.1580	p.L527P	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710	121	0	0	117	283	70.75	-	-	-	C	43672428	T	C	43672428	3	2	80	1	0	0	0	0	1	0	0	0	17413	1580	55	5	1614	5	WDR65	1	43672428	Missense_Mutation	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	1623713	43672428	205578193	3	5443										
FNDC7	0	genome.wustl.edu	37	chr1	109273351	109273351	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	atcacccagtcagtaatcaaCgtgagctggactattgggag	11	9	3	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	109273351	109273351	C	G	SNP	FNDC7	ENST00000271311	human	ensembl	69_37n	1	known	missense	c.1683	p.N561K	0.996	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107	127	0	0	108	18	14.29	-	-	-	G	109273351	C	G	109273351	3	3	80	1	0	0	0	0	1	0	0	0	6019	535	19	3	1714	3	FNDC7	1	109273351	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	65600923	109273351	139977270	4	5444										
DENND2D	0	genome.wustl.edu	37	chr1	111742287	111742287	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ataggctcgtaatcatcctcTgaacgcttctttttgagaga	8	9	3	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	111742287	111742287	T	C	SNP	DENND2D	ENST00000357640	human	ensembl	69_37n	-1	known	silent	c.201	p.S67	0.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777	62	0	0	41	16	28.07	-	-	-	C	111742287	T	C	111742287	2	2	80	1	0	0	0	0	0	0	0	1	4467	1567	55	5		5	DENND2D	1	111742287	Silent	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	2468936	111742287	137508334	5	5445										
ZNF687	0	genome.wustl.edu	37	chr1	151261988	151261988	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ttgtcctctgctctttgcccAaaaaaggaccatgctggaac	8	12	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	151261988	151261988	A	G	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.2606	p.Q869R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	86	0	0	125	15	10.64	-	-	-	G	151261988	A	G	151261988	3	3	80	1	0	0	0	0	1	0	0	0	18188	130	5	5	2620	5	ZNF687	1	151261988	Missense_Mutation	SNP	A	TCGA-A2-A0YM-01A-11D-A10G-09	39519701	151261988	97988633	6	5446										
FLG	0	genome.wustl.edu	37	chr1	152278649	152278649	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agcagacccagaccacctctCagagtcttctgaatgtccct	7	15	3	4			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	152278649	152278649	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8713	p.E2905Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	304	1	0.33	333	92	21.65	-	-	-	G	152278649	C	G	152278649	3	3	80	1	0	0	0	0	1	0	0	0	5968	835	29	2	3476	2	FLG	1	152278649	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	1016661	152278649	96971972	7	5447										
OR6K2	0	genome.wustl.edu	37	chr1	158669827	158669827	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cacagctgtaataatctccaCtgcatgaatgacatccacta	5	12	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	1	158669827	158669827	C	A	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	missense	c.616	p.V206L	0.551	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	87	0	0	85	30	26.09	-	-	-	A	158669827	C	A	158669827	3	1	80	1	0	0	0	0	1	0	0	0	11275	565	20	4	362	4	OR6K2	1	158669827	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	6391178	158669827	90580794	8	5448										
NLRC4	0	genome.wustl.edu	37	chr2	32476335	32476335	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gctgagacggaggaagaagaCgaatttgaacttggtcagag	15	5	1	5			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	32476335	32476335	C	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.598	p.V200F	0.982	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	94	0	0	61	10	14.08	-	-	-	A	32476335	C	A	32476335	3	1	80	1	0	0	0	0	1	0	0	0	10541	536	19	3	2500	3	NLRC4	2	32476335	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		32476335	210723038	9	5449										
SRBD1	0	genome.wustl.edu	37	chr2	45774701	45774701	+	Frame_Shift_Del	DEL	G	G	-													0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctttattttctccgcctctcGgaagccttgtccacaatgca							TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	45774701	45774701	G	-	DEL	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	frame_shift_del	c.1726	p.R576fs	1.000	smart_YqgF/RNaseH-like_dom	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	133	0	0	118	29	19.59	-	-	-	-	45774701	G	-	45774701	7	5	80	1	0	1	0	1	0	0	0	0	15224	1124	39	0	1297	0	SRBD1	2	45774701	Frame_Shift_Del	DEL	G	TCGA-A2-A0YM-01A-11D-A10G-09	13298366	45774701	197424672	10	5450	42	2								
SRBD1	0	genome.wustl.edu	37	chr2	45774705	45774705	+	Silent	SNP	G	G	A													0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	attttctccgcctctcggaaGccttgtccacaatgcaagta							TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	45774705	45774705	G	A	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	silent	c.1722	p.G574	0.985	smart_YqgF/RNaseH-like_dom	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	135	0	0	121	33	21.29	-	-	-	A	45774705	G	A	45774705	2	1	80	1	0	0	0	0	0	0	0	1	15224	958	34	4		4	SRBD1	2	45774705	Silent	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	4	45774705	197424668	11	5451	42	2								
CTNNA2	0	genome.wustl.edu	37	chr2	80801302	80801302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	acccagtgatgccacgcttcGctgaacaagtagaggttgcc	11	12	0	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	80801302	80801302	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1858	p.A620T	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	157	0	0	81	32	28.32	-	-	-	A	80801302	G	A	80801302	3	1	80	1	0	0	0	0	1	0	0	0	4045	1087	38	1	1594	1	CTNNA2	2	80801302	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	35026597	80801302	162398071	12	5452										
TUBA3D	0	genome.wustl.edu	37	chr2	132237879	132237879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctgactgtgccttcatggtcGacaatgaagccatctatgac	9	11	2	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	132237879	132237879	G	A	SNP	TUBA3D	ENST00000321253	human	ensembl	69_37n	1	known	missense	c.613	p.D205N	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	236	1	0.42	204	45	18.07	-	-	-	A	132237879	G	A	132237879	3	1	80	1	0	0	0	0	1	0	0	0	16844	1058	37	1	627	1	TUBA3D	2	132237879	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	51436577	132237879	110961494	13	5453										
DYTN	0	genome.wustl.edu	37	chr2	207557962	207557962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ccagcagctgctgccttctcGctgcttctttcttcctacag	7	16	3	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	207557962	207557962	G	A	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	missense	c.917	p.A306V	0.000	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	108	0	0	78	22	22	-	-	-	A	207557962	G	A	207557962	3	1	80	1	0	0	0	0	1	0	0	0	4896	1087	38	1	835	1	DYTN	2	207557962	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	75320083	207557962	35641411	14	5454										
COL6A3	0	genome.wustl.edu	37	chr2	238245104	238245104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ttgtggtggtcaccggcttcGtcgtagtcaccggcttcgtt	13	11	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	2	238245104	238245104	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.8639	p.T2880M	0.001	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	265	0	0	205	66	24.35	-	-	-	A	238245104	G	A	238245104	3	1	80	1	0	0	0	0	1	0	0	0	3731	1145	40	1	914	1	COL6A3	2	238245104	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	30687142	238245104	4954269	15	5455										
PLCL2	0	genome.wustl.edu	37	chr3	17051565	17051565	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagatgttgcaaacatctggGttacaggactgcggtaccta	11	9	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	17051565	17051565	G	C	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.349	p.V117L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	96	0	0	66	11	14.29	-	-	-	C	17051565	G	C	17051565	3	2	80	1	0	0	0	0	1	0	0	0	12114	1261	44	4	727	4	PLCL2	3	17051565	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		17051565	180970865	16	5456										
SCN11A	0	genome.wustl.edu	37	chr3	38924780	38924780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	aaagctctcaaaccagctgtGtttcactatttggtagcagg	9	9	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	38924780	38924780	G	T	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.3163	p.H1055N	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	90	0	0	76	22	22.45	-	-	-	T	38924780	G	T	38924780	3	4	80	1	0	0	0	0	1	0	0	0	14001	1377	48	4	2248	4	SCN11A	3	38924780	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	21873215	38924780	159097650	17	5457										
GNL3	0	genome.wustl.edu	37	chr3	52726938	52726938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gatcacaatcatagatagtcCgagcttcatcgtatctccac	6	12	4	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	52726938	52726938	C	T	SNP	GNL3	ENST00000418458	human	ensembl	69_37n	1	known	missense	c.920	p.P307L	1.000	pfam_GTP_binding_domain	pfam_Gnl3_N_dom,pfam_GTP_binding_domain	-	no_errors	GNL3	HGNC	ENSG00000163938	93	0	0	72	24	25	-	-	-	T	52726938	C	T	52726938	3	4	80	1	0	0	0	0	1	0	0	0	6589	652	23	1	958	1	GNL3	3	52726938	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	13802158	52726938	145295492	18	5458										
GLT8D1	0	genome.wustl.edu	37	chr3	52729961	52729961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tacctggtttcctgctccacGgatgacaactttagtagagg	10	10	0	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	52729961	52729961	G	A	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.628	p.R210C	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	110	0	0	94	21	18.26	-	-	-	A	52729961	G	A	52729961	3	1	80	1	0	0	0	0	1	0	0	0	6521	1116	39	1	503	1	GLT8D1	3	52729961	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	3023	52729961	145292469	19	5459										
MYH15	0	genome.wustl.edu	37	chr3	108220616	108220616	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgcagcacggatgcctcattGaggtgagtcagcattgccat	12	10	2	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	108220616	108220616	G	C	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	silent	c.342	p.L114	0.997	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	94	0	0	96	19	16.52	-	-	-	C	108220616	G	C	108220616	2	2	80	1	0	0	0	0	0	0	0	1	10106	1277	45	2		2	MYH15	3	108220616	Silent	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	55490655	108220616	89801814	20	5460										
C3orf30	0	genome.wustl.edu	37	chr3	118867057	118867057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagaaattgaccaaggaaagGgttatcatatacgcaatcaa	8	7	2	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	118867057	118867057	G	T	SNP	C3orf30	ENST00000295622	human	ensembl	69_37n	1	known	missense	c.1429	p.G477C	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	130	0	0	165	21	11.29	-	-	-	T	118867057	G	T	118867057	3	4	80	1	0	0	0	0	1	0	0	0	2240	1232	43	4	1435	4	C3orf30	3	118867057	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	10646441	118867057	79155373	21	5461										
C3orf36	0	genome.wustl.edu	37	chr3	133647451	133647451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	caggagccccttccagtgtaGactccaggagggtactctga	12	12	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	133647451	133647451	G	C	SNP	C3orf36	ENST00000408895	human	ensembl	69_37n	-1	known	missense	c.197	p.S66C	0.004	NULL	NULL	-	no_errors	C3orf36	HGNC	ENSG00000221972	65	0	0	56	9	13.85	-	-	-	C	133647451	G	C	133647451	3	2	80	1	0	0	0	0	1	0	0	0	2246	942	33	2	304	2	C3orf36	3	133647451	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	14780394	133647451	64374979	22	5462										
ABCF3	0	genome.wustl.edu	37	chr3	183905743	183905743	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	aatcctatgatgtgcgaattGagaactttgatgtgtctttt	9	5	1	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	183905743	183905743	G	C	SNP	ABCF3	ENST00000429586	human	ensembl	69_37n	1	known	missense	c.541	p.E181Q	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204	154	0	0	128	23	15.23	-	-	-	C	183905743	G	C	183905743	3	2	80	1	0	0	0	0	1	0	0	0	67	1291	45	2	563	2	ABCF3	3	183905743	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	50258292	183905743	14116687	23	5463										
TRA2B	0	genome.wustl.edu	37	chr3	185644497	185644497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tccccgatccgtgagcacttCcacttctggaagcagaacgg	10	14	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	3	185644497	185644497	C	T	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	missense	c.62	p.G21E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	65	0	0	98	15	13.27	-	-	-	T	185644497	C	T	185644497	3	4	80	1	0	0	0	0	1	0	0	0	16530	855	30	2	836	2	TRA2B	3	185644497	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	1738754	185644497	12377933	24	5464										
NSUN7	0	genome.wustl.edu	37	chr4	40810797	40810797	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ttttcaagtccccaagggatCagatctcggatgccaactca	8	12	4	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	4	40810797	40810797	C	G	SNP	NSUN7	ENST00000381782	human	ensembl	69_37n	1	known	missense	c.1998	p.I666M	0.023	NULL	pfam_Fmu/NOL1/Nop2p	-	no_errors	NSUN7	HGNC	ENSG00000179299	111	0	0	75	23	23.47	-	-	-	G	40810797	C	G	40810797	3	3	80	1	0	0	0	0	1	0	0	0	10756	816	29	2	2040	2	NSUN7	4	40810797	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		40810797	150343479	25	5465										
SDAD1	0	genome.wustl.edu	37	chr4	76891502	76891502	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgaatggctgaaaagttaaaCacctctggttttttcttctt	7	7	3	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	4	76891502	76891502	C	G	SNP	SDAD1	ENST00000356260	human	ensembl	69_37n	-1	known	silent	c.843	p.V281	1.000	superfamily_ARM-type_fold	pfam_SDA1,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	125	0	0	96	47	32.87	-	-	-	G	76891502	C	G	76891502	2	3	80	1	0	0	0	0	0	0	0	1	14038	465	17	4		4	SDAD1	4	76891502	Silent	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	36080705	76891502	114262774	26	5466										
PRKG2	0	genome.wustl.edu	37	chr4	82092953	82092953	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cccttggaacacctctagtcGaccctctatcaagcagaatt	6	14	3	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	4	82092953	82092953	G	A	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	nonsense	c.634	p.R212*	0.009	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	134	1	0.74	93	41	30.6	-	-	-	A	82092953	G	A	82092953	4	1	80	1	0	0	0	0	0	1	0	0	12604	1066	37	1	1718	1	PRKG2	4	82092953	Nonsense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	5201451	82092953	109061323	27	5467										
HPGDS	0	genome.wustl.edu	37	chr4	95223325	95223325	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	caataagccattctctccccCctaaatatgtgtccaagtct	4	14	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	4	95223325	95223325	C	A	SNP	HPGDS	ENST00000295256	human	ensembl	69_37n	-1	known	missense	c.407	p.G136V	0.723	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	HPGDS	HGNC	ENSG00000163106	145	0	0	102	66	39.29	-	-	-	A	95223325	C	A	95223325	3	1	80	1	0	0	0	0	1	0	0	0	7386	623	22	4	200	4	HPGDS	4	95223325	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	13130372	95223325	95930951	28	5468										
AP3B1	0	genome.wustl.edu	37	chr5	77590365	77590365	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agctccgtcgcctcccctccTccggactgctcattgtaagg	9	17	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	5	77590365	77590365	T	A	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	silent	c.39	p.G13	0.796	pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	72	0	0	37	12	24.49	-	-	-	A	77590365	T	A	77590365	2	1	80	1	0	0	0	0	0	0	0	1	745	1538	54	5		5	AP3B1	5	77590365	Silent	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09		77590365	103324895	29	5469										
PCDHA12	0	genome.wustl.edu	37	chr5	140256728	140256728	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctgcaggtgttcgtgctggaCgagaacgacaacgcgccggc	15	12	0	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	5	140256728	140256728	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.1671	p.D557	0.527	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	43	0	0	26	6	18.75	-	-	-	T	140256728	C	T	140256728	2	4	80	1	0	0	0	0	0	0	0	1	11595	535	19	1		1	PCDHA12	5	140256728	Silent	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	62666363	140256728	40658532	30	5470										
HIST1H4L	0	genome.wustl.edu	37	chr6	27841182	27841182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctccacgccgtgccaggcgtCggatggcgggcttggtgatg	17	12	0	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	6	27841182	27841182	C	T	SNP	HIST1H4L	ENST00000355981	human	ensembl	69_37n	-1	known	missense	c.107	p.R36Q	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4L	HGNC	ENSG00000198558	66	0	0	71	15	17.44	-	-	-	T	27841182	C	T	27841182	3	4	80	1	0	0	0	0	1	0	0	0	7227	884	31	1	208	1	HIST1H4L	6	27841182	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		27841182	143273885	31	5471										
WDR46	0	genome.wustl.edu	37	chr6	33248585	33248585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gttcaagggagggtgggctgGccttgccctgccctgcccag	16	13	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	6	33248585	33248585	G	A	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	missense	c.1295	p.A432V	0.983	superfamily_WD40_repeat_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	50	0	0	53	12	18.18	-	-	-	A	33248585	G	A	33248585	3	1	80	1	0	0	0	0	1	0	0	0	17396	1203	42	4	557	4	WDR46	6	33248585	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	5407403	33248585	137866482	32	5472										
SYNGAP1	0	genome.wustl.edu	37	chr6	33410890	33410890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gggtgatgggcctggtggccGcctcaacagcagcagtgttt	16	10	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	6	33410890	33410890	G	A	SNP	SYNGAP1	ENST00000418600	human	ensembl	69_37n	1	known	missense	c.2561	p.R854H	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283	36	0	0	30	6	16.67	-	-	-	A	33410890	G	A	33410890	3	1	80	1	0	0	0	0	1	0	0	0	15539	1087	38	1	2619	1	SYNGAP1	6	33410890	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	162305	33410890	137704177	33	5473										
PEX6	0	genome.wustl.edu	37	chr6	42934186	42934186	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgccaggacactgaggggatCtaggagatggaaagtgcgtg	17	6	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	6	42934186	42934186	C	T	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	splice_site	c.2095-1	e11-1	1.000	-	-	-	no_errors	PEX6	HGNC	ENSG00000124587	45	0	0	46	9	16.36	-	-	-	T	42934186	C	T	42934186	5	4	80	1	0	0	0	0	0	0	1	0	11824	927	32	2	876	2	PEX6	6	42934186	Splice_Site	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	9523296	42934186	128180881	34	5474										
TNRC18	0	genome.wustl.edu	37	chr7	5396789	5396789	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ttttcgatttccccccagcaCtgtccgaaaacttgaagggc	8	13	0	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	7	5396789	5396789	C	G	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.4952	p.S1651T	0.056	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	84	0	0	51	14	21.54	-	-	-	G	5396789	C	G	5396789	3	3	80	1	0	0	0	0	1	0	0	0	16434	565	20	4	4014	4	TNRC18	7	5396789	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		5396789	153741874	35	5475										
AKAP9	0	genome.wustl.edu	37	chr7	91729014	91729014	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tttccagcccagcttggtgtCcccaagtacttcttgtggct	9	13	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	7	91729014	91729014	C	A	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.10739	p.S3580Y	0.012	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	97	0	0	40	20	33.33	-	-	-	A	91729014	C	A	91729014	3	1	80	1	0	0	0	0	1	0	0	0	459	855	30	2	10901	2	AKAP9	7	91729014	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	86332225	91729014	67409649	36	5476										
AP1S1	0	genome.wustl.edu	37	chr7	100802408	100802408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctggatgagtttttgatgggGggggatgtccaggacacctc	16	7	0	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	7	100802408	100802408	G	T	SNP	AP1S1	ENST00000429457	human	ensembl	69_37n	1	putative	missense	c.485	p.G162V	0.052	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	-	no_start_codon:pseudogene:no_stop_codon	AP1S1	HGNC	ENSG00000106367	84	0	0	36	24	40	-	-	-	T	100802408	G	T	100802408	3	4	80	1	0	0	0	0	1	0	0	0	737	1219	43	4	374	4	AP1S1	7	100802408	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	9073394	100802408	58336255	37	5477										
KCND2	0	genome.wustl.edu	37	chr7	119915032	119915032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	acgagtgcatctctgcttacGatgaagaactggccttcttt	9	10	2	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	7	119915032	119915032	G	A	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.346	p.D116N	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	36	0	0	22	5	17.86	-	-	-	A	119915032	G	A	119915032	3	1	80	1	0	0	0	0	1	0	0	0	8073	1058	37	1	348	1	KCND2	7	119915032	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	19112624	119915032	39223631	38	5478										
DMRTA1	0	genome.wustl.edu	37	chr9	22451752	22451752	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gagggttatctggttttatgTcaccctacctaacacctggg	10	10	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	9	22451752	22451752	T	C	SNP	DMRTA1	ENST00000325870	human	ensembl	69_37n	1	known	missense	c.1357	p.S453P	1.000	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTA1	HGNC	ENSG00000176399	161	0	0	130	28	17.72	-	-	-	C	22451752	T	C	22451752	3	2	80	1	0	0	0	0	1	0	0	0	4624	1667	58	5	1363	5	DMRTA1	9	22451752	Missense_Mutation	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09		22451752	118761679	39	5479										
ARID3C	0	genome.wustl.edu	37	chr9	34622463	34622463	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cctctggtgccaatttctccCgtgtaggtcccagtgccagg	11	14	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	9	34622463	34622463	C	G	SNP	ARID3C	ENST00000378909	human	ensembl	69_37n	-1	known	missense	c.929	p.R310P	0.912	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3C	HGNC	ENSG00000205143	52	0	0	39	9	18	-	-	-	G	34622463	C	G	34622463	3	3	80	1	0	0	0	0	1	0	0	0	920	652	23	3	320	3	ARID3C	9	34622463	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	12170711	34622463	106590968	40	5480										
KIAA0368	0	genome.wustl.edu	37	chr9	114156470	114156470	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ttgtgggtacttagcttcctGacaagggaaaggagccagat	13	7	0	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	9	114156470	114156470	G	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	silent	c.3426	p.V1142	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	142	0	0	62	45	42.06	-	-	-	A	114156470	G	A	114156470	2	1	80	1	0	0	0	0	0	0	0	1	8223	1277	45	2		2	KIAA0368	9	114156470	Silent	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	79534007	114156470	27056961	41	5481										
NMT2	0	genome.wustl.edu	37	chr10	15151734	15151734	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gtacctggacacctccaattGtacaggtaatactgcaaatt	7	10	0	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	10	15151734	15151734	G	T	SNP	NMT2	ENST00000378143	human	ensembl	69_37n	-1	known	nonsense	c.1536	p.Y512*	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465	153	0	0	95	40	29.41	-	-	-	T	15151734	G	T	15151734	4	4	80	1	0	0	0	0	0	1	0	0	10576	1372	48	4	61	4	NMT2	10	15151734	Nonsense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		15151734	120383013	42	5482										
SVIL	0	genome.wustl.edu	37	chr10	29813436	29813436	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagtgtgactggctgagtttGatagcgagcgttcattctcc	12	9	2	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	10	29813436	29813436	G	A	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	nonsense	c.2551	p.Q851*	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	231	0	0	142	98	40.66	-	-	-	A	29813436	G	A	29813436	4	1	80	1	0	0	0	0	0	1	0	0	15512	1299	45	2	4193	2	SVIL	10	29813436	Nonsense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	14661702	29813436	105721311	43	5483										
DNA2	0	genome.wustl.edu	37	chr10	70190364	70190364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agaatattgtcaacagcagaGtgtgtatagctggtcaacaa	10	6	2	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	10	70190364	70190364	G	A	SNP	DNA2	ENST00000440722	human	ensembl	69_37n	-1	putative	missense	c.1	p.L1F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNA2	HGNC	ENSG00000138346	130	0	0	116	18	13.43	-	-	-	A	70190364	G	A	70190364	3	1	80	1	0	0	0	0	1	0	0	0	4632	1020	36	4	1177	4	DNA2	10	70190364	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	40376928	70190364	65344383	44	5484										
IGSF22	0	genome.wustl.edu	37	chr11	18733928	18733928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ggccctgtggaggctttggaCggtctggggacagagaacag	18	8	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	18733928	18733928	C	T	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	missense	c.2099	p.R700H	0.591	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	74	0	0	46	11	19.3	-	-	-	T	18733928	C	T	18733928	3	4	80	1	0	0	0	0	1	0	0	0	7654	536	19	1	1917	1	IGSF22	11	18733928	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		18733928	116272588	45	5485										
OR5T3	0	genome.wustl.edu	37	chr11	56019960	56019960	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	atgtattattttcttagtgtTttatcattcttggatgcttg	7	4	3	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	56019960	56019960	T	C	SNP	OR5T3	ENST00000303059	human	ensembl	69_37n	1	known	silent	c.285	p.V95	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T3	HGNC	ENSG00000172489	161	0	0	147	44	23.04	-	-	-	C	56019960	T	C	56019960	2	2	80	1	0	0	0	0	0	0	0	1	11256	1828	64	5		5	OR5T3	11	56019960	Silent	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	37286032	56019960	78986556	46	5486										
CCDC83	0	genome.wustl.edu	37	chr11	85623726	85623726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	attcctgtcccacctctaatCctcgtcatctgctgctgctg	6	16	3	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	85623726	85623726	C	T	SNP	CCDC83	ENST00000280245	human	ensembl	69_37n	1	known	missense	c.829	p.P277S	0.000	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676	250	0	0	169	54	24.11	-	-	-	T	85623726	C	T	85623726	3	4	80	1	0	0	0	0	1	0	0	0	2884	855	30	2	859	2	CCDC83	11	85623726	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	29603766	85623726	49382790	47	5487										
TYR	0	genome.wustl.edu	37	chr11	88911667	88911667	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tttgtctggatgcattattaTgtgtcaatggatgcactgct	10	6	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	88911667	88911667	T	C	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	silent	c.546	p.Y182	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	94	0	0	70	21	23.08	-	-	-	C	88911667	T	C	88911667	2	2	80	1	0	0	0	0	0	0	0	1	16910	1471	51	5		5	TYR	11	88911667	Silent	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	3287941	88911667	46094849	48	5488										
SDHD	0	genome.wustl.edu	37	chr11	111958687	111958687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagcacatacacttgtcaccGagccaccattgtatgttctc	6	14	2	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	111958687	111958687	G	A	SNP	SDHD	ENST00000530923	human	ensembl	69_37n	1	known	missense	c.149	p.R50Q	0.071	pfam_Cyt_b_succ_DH_CybS	pfam_Cyt_b_succ_DH_CybS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SDHD	HGNC	ENSG00000204370	113	0	0	46	30	39.47	-	-	-	A	111958687	G	A	111958687	3	1	80	1	0	0	0	0	1	0	0	0	14055	1045	37	1	165	1	SDHD	11	111958687	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	23047020	111958687	23047829	49	5489										
GRAMD1B	0	genome.wustl.edu	37	chr11	123479407	123479407	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gaggacctgagtggccggcaGtacgtgaatgaagtcttcaa	14	8	2	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	11	123479407	123479407	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	silent	c.1125	p.Q375	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	86	0	0	14	28	66.67	-	-	-	A	123479407	G	A	123479407	2	1	80	1	0	0	0	0	0	0	0	1	6799	1020	36	4		4	GRAMD1B	11	123479407	Silent	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	11520720	123479407	11527109	50	5490										
ALG10B	0	genome.wustl.edu	37	chr12	38712083	38712083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgggatcccatgattactacAttacctggcttgtacctggt	9	10	0	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	12	38712083	38712083	A	C	SNP	ALG10B	ENST00000548240	human	ensembl	69_37n	1	known	missense	c.166	p.I56L	0.443	NULL	pfam_Glycosyltransferase_ALG10	-	no_errors	ALG10B	HGNC	ENSG00000175548	224	0	0	308	42	12	-	-	-	C	38712083	A	C	38712083	3	2	80	1	0	0	0	0	1	0	0	0	512	204	8	5	198	5	ALG10B	12	38712083	Missense_Mutation	SNP	A	TCGA-A2-A0YM-01A-11D-A10G-09		38712083	95139812	51	5491										
POU6F1	0	genome.wustl.edu	37	chr12	51584232	51584232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgaaggaggtgcggcgtttgCgtttcttggagggctcgcct	17	8	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	12	51584232	51584232	C	T	SNP	POU6F1	ENST00000333640	human	ensembl	69_37n	-1	known	missense	c.704	p.R235H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU6F1	HGNC	ENSG00000184271	64	0	0	34	15	30.61	-	-	-	T	51584232	C	T	51584232	3	4	80	1	0	0	0	0	1	0	0	0	12357	768	27	1	205	1	POU6F1	12	51584232	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	12872149	51584232	82267663	52	5492										
HECTD1	0	genome.wustl.edu	37	chr14	31675003	31675003	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tgatgaaggaatgtacttacGtttcaaaacaacgatccacg	8	8	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	14	31675003	31675003	G	C	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.140	p.T47R	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	116	0	0	59	31	34.07	-	-	-	C	31675003	G	C	31675003	3	2	80	1	0	0	0	0	1	0	0	0	7090	1159	40	3	7860	3	HECTD1	14	31675003	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		31675003	75674537	53	5493										
PSTPIP1	0	genome.wustl.edu	37	chr15	77310845	77310845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ggagctggtgcagatcgcacGgaaggcaggtggccagacgg	19	9	0	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	15	77310845	77310845	G	A	SNP	PSTPIP1	ENST00000559785	human	ensembl	69_37n	1	known	missense	c.380	p.R127Q	1.000	pfam_FCH,superfamily_Prismane-like,smart_FCH,pfscan_FCH	pfam_FCH,superfamily_Prismane-like,smart_FCH,pfscan_FCH	-	no_errors	PSTPIP1	HGNC	ENSG00000140368	70	0	0	35	10	22.22	-	-	-	A	77310845	G	A	77310845	3	1	80	1	0	0	0	0	1	0	0	0	12801	1116	39	1	195	1	PSTPIP1	15	77310845	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		77310845	25220547	54	5494										
CLDN9	0	genome.wustl.edu	37	chr16	3063852	3063852	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	aagcgggagctgggggcctcCctctacctgggctgggcggc	18	13	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	16	3063852	3063852	C	G	SNP	CLDN9	ENST00000445369	human	ensembl	69_37n	1	known	silent	c.489	p.S163	0.951	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937	15	0	0	6	4	40	-	-	-	G	3063852	C	G	3063852	2	3	80	1	0	0	0	0	0	0	0	1	3522	610	22	4		4	CLDN9	16	3063852	Silent	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		3063852	87290901	55	5495										
SYCE1L	0	genome.wustl.edu	37	chr16	77240349	77240349	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tttctacagggcaagccaagTctttgaagactgaagacttg	10	8	2	4			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	16	77240349	77240349	T	A	SNP	SYCE1L	ENST00000378644	human	ensembl	69_37n	1	known	missense	c.73	p.S25T	0.002	NULL	NULL	-	no_errors	SYCE1L	HGNC	ENSG00000205078	115	0	0	61	19	23.46	-	-	-	A	77240349	T	A	77240349	3	1	80	1	0	0	0	0	1	0	0	0	15520	1667	58	5	79	5	SYCE1L	16	77240349	Missense_Mutation	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	74176497	77240349	13114404	56	5496										
TP53	0	genome.wustl.edu	37	chr17	7574030	7574030	+	Frame_Shift_Del	DEL	G	G	-													0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctcgaagcgctcacgcccacGgatctgcagcaacagaggag							TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	7574030	7574030	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.997	p.R333fs	0.645	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	43	0	0	16	20	55.56	-	-	-	-	7574030	G	-	7574030	7	5	80	1	0	1	0	1	0	0	0	0	16477	1116	39	0	192	0	TP53	17	7574030	Frame_Shift_Del	DEL	G	TCGA-A2-A0YM-01A-11D-A10G-09		7574030	73621180	57	5497										
DNAH2	0	genome.wustl.edu	37	chr17	7708622	7708622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agagatcaagtcttatggacGgcccccagcccaagtggaga	12	11	2	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	7708622	7708622	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.9353	p.R3118Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	100	1	0.98	36	54	60	-	-	-	A	7708622	G	A	7708622	3	1	80	1	0	0	0	0	1	0	0	0	4638	1116	39	1	9591	1	DNAH2	17	7708622	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	134592	7708622	73486588	58	5498										
CHD3	0	genome.wustl.edu	37	chr17	7800561	7800561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gatggaggagaagtactatcGttttggcatcaagccagagt	13	6	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	7800561	7800561	G	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.1868	p.R623H	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	54	0	0	34	4	10.53	-	-	-	A	7800561	G	A	7800561	3	1	80	1	0	0	0	0	1	0	0	0	3355	1145	40	1	2191	1	CHD3	17	7800561	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09	91939	7800561	73394649	59	5499										
SHMT1	0	genome.wustl.edu	37	chr17	18232668	18232668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gtcagtgctggggtccccagCcgcagtccactgggccgcag	15	15	1	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	18232668	18232668	C	G	SNP	SHMT1	ENST00000316694	human	ensembl	69_37n	-1	known	silent	c.1206	p.R402	0.466	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT1	HGNC	ENSG00000176974	57	0	0	59	8	11.94	-	-	-	G	18232668	C	G	18232668	2	3	80	1	0	0	0	0	0	0	0	1	14374	726	26	4		4	SHMT1	17	18232668	Silent	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	10432107	18232668	62962542	60	5500										
TAOK1	0	genome.wustl.edu	37	chr17	27825439	27825439	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagcagccaaagcagtagtgTtaacagtcttccagatgtct	9	10	2	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	27825439	27825439	T	G	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	missense	c.1103	p.V368G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	65	0	0	38	26	40.62	-	-	-	G	27825439	T	G	27825439	3	3	80	1	0	0	0	0	1	0	0	0	15639	1725	60	5	1145	5	TAOK1	17	27825439	Missense_Mutation	SNP	T	TCGA-A2-A0YM-01A-11D-A10G-09	9592771	27825439	53369771	61	5501										
ATAD5	0	genome.wustl.edu	37	chr17	29196617	29196617	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agacaaacaaggtgtaaactCacaaaaaccctgttttttta	5	8	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	29196617	29196617	C	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	nonsense	c.3560	p.S1187*	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	167	0	0	121	40	24.84	-	-	-	G	29196617	C	G	29196617	4	3	80	1	0	0	0	0	0	1	0	0	1080	838	29	2	3614	2	ATAD5	17	29196617	Nonsense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	1371178	29196617	51998593	62	5502										
CD79B	0	genome.wustl.edu	37	chr17	62007688	62007688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	agcagtgcattttcaccgtgAagccccgtttcctggctatg	10	12	1	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	62007688	62007688	A	G	SNP	CD79B	ENST00000392795	human	ensembl	69_37n	-1	known	missense	c.179	p.F60S	0.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like	-	no_errors	CD79B	HGNC	ENSG00000007312	55	0	0	62	13	17.33	-	-	-	G	62007688	A	G	62007688	3	3	80	1	0	0	0	0	1	0	0	0	3066	246	9	5	529	5	CD79B	17	62007688	Missense_Mutation	SNP	A	TCGA-A2-A0YM-01A-11D-A10G-09	32811071	62007688	19187522	63	5503										
HN1	0	genome.wustl.edu	37	chr17	73132265	73132265	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	tggcactggggccggggccaCcgggctgggcacaggcgcag	20	13	0	0			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	17	73132265	73132265	C	A	SNP	HN1	ENST00000409753	human	ensembl	69_37n	-1	known	missense	c.397	p.V133L	0.987	NULL	NULL	-	no_errors	HN1	HGNC	ENSG00000189159	21	0	0	26	7	21.21	-	-	-	A	73132265	C	A	73132265	3	1	80	1	0	0	0	0	1	0	0	0	7300	507	18	4	171	4	HN1	17	73132265	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	11124577	73132265	8062945	64	5504										
UNC13A	0	genome.wustl.edu	37	chr19	17756618	17756618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	gtcatcctcgtcccagacgcGcaccttgatgcggtcggagg	13	14	1	2			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	19	17756618	17756618	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.2485	p.R829C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	100	1	0.99	45	36	44.44	-	-	-	A	17756618	G	A	17756618	3	1	80	1	0	0	0	0	1	0	0	0	17081	1087	38	1	2990	1	UNC13A	19	17756618	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		17756618	41372365	65	5505										
NUP62	0	genome.wustl.edu	37	chr19	50411501	50411501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	cagggctgctgtcgctcagtCaaaggtgatccggaagctgc	14	11	2	1			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	19	50411501	50411501	C	G	SNP	NUP62	ENST00000352066	human	ensembl	69_37n	-1	known	missense	c.1564	p.D522H	0.991	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024	37	0	0	18	9	33.33	-	-	-	G	50411501	C	G	50411501	3	3	80	1	0	0	0	0	1	0	0	0	10841	826	29	2	8	2	NUP62	19	50411501	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09	32654883	50411501	8717482	66	5506										
TASP1	0	genome.wustl.edu	37	chr20	13610600	13610601	+	In_Frame_Ins	INS	-	-	CCT													0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	ctgcatgcaccaacacaaagINScctcctcgtttctctttata							TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	20	13610600	13610601	-	CCT	INS	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	in_frame_ins	c.126_125	p.43in_frame_insG	1.000:1.000	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	173	0	0	126	21	14.29	-	-	-	CCT	13610601	-	CCT	13610600	7	5	80	1	0	1	1	0	0	0	0	0	15681	958	34	0	1188	0	TASP1	20	13610600	In_Frame_Ins	INS	-	TCGA-A2-A0YM-01A-11D-A10G-09		13610600	49414920	67	5507										
SH3BGR	0	genome.wustl.edu	37	chr21	40834367	40834367	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	aaatcgactttaaggaattaGatattgctggagatgaagac	10	4	0	4			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	21	40834367	40834367	G	A	SNP	SH3BGR	ENST00000333634	human	ensembl	69_37n	1	known	missense	c.301	p.D101N	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437	172	0	0	291	50	14.62	-	-	-	A	40834367	G	A	40834367	3	1	80	1	0	0	0	0	1	0	0	0	14328	942	33	2	307	2	SH3BGR	21	40834367	Missense_Mutation	SNP	G	TCGA-A2-A0YM-01A-11D-A10G-09		40834367	7295528	68	5508										
CACNA1F	0	genome.wustl.edu	37	chrX	49065105	49065105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161764705882353	11	0.114737499973655	1.86631016042781	3.48377896613191	1.02968836437396	0.394855918075732	0.991179622791967	0	aggcagagacacagaaatccCggagccccggcgagctgagg	15	12	0	3			TCGA-A2-A0YM-01A-11D-A10G-09	TCGA-A2-A0YM-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1125ec93-6d24-4537-9c89-526f2d6b2299	1b5a4092-b33a-442c-808c-abbaf60d033c	X	49065105	49065105	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.5026	p.G1676R	0.066	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	67	0	0	12	19	61.29	-	-	-	T	49065105	C	T	49065105	3	4	80	1	0	0	0	0	1	0	0	0	2568	652	23	1	931	1	CACNA1F	23	49065105	Missense_Mutation	SNP	C	TCGA-A2-A0YM-01A-11D-A10G-09		49065105	106205455	69	5509										
MRTO4	0	genome.wustl.edu	37	chr1	19584466	19584466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ggcagctgggcctgcccaccGccctcaagagaggtatgggc	15	14	1	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	1	19584466	19584466	G	A	SNP	MRTO4	ENST00000330263	human	ensembl	69_37n	1	known	missense	c.481	p.A161T	0.898	NULL	pfam_Ribosomal_L10/acidic_P0	-	no_errors	MRTO4	HGNC	ENSG00000053372	34	0	0	6	10	62.5	-	-	-	A	19584466	G	A	19584466	3	1	81	1	0	0	0	0	1	0	0	0	9924	1087	38	1	503	1	MRTO4	1	19584466	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		19584466	229666155	1	5510										
RUSC1	0	genome.wustl.edu	37	chr1	155295350	155295350	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	cttggctgactgcaccccacGttctcaggctccagcacccg	9	18	1	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	1	155295350	155295350	G	A	SNP	RUSC1	ENST00000473331	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	RUSC1	HGNC	ENSG00000160753	63	0	0	29	12	29.27	-	-	-	A	155295350	G	A	155295350	1	1	81	0	1	0	0	0	0	0	0	0	13836	1160	40	1		1	RUSC1	1	155295350	RNA	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	135710884	155295350	93955271	2	5511										
SLAMF7	0	genome.wustl.edu	37	chr1	160718252	160718252	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	atctactatgtggggatataCagctcatcactccagcagcc	8	12	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	1	160718252	160718252	C	A	SNP	SLAMF7	ENST00000368043	human	ensembl	69_37n	1	known	nonsense	c.324	p.Y108*	0.004	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF7	HGNC	ENSG00000026751	96	0	0	56	9	13.85	-	-	-	A	160718252	C	A	160718252	4	1	81	1	0	0	0	0	0	1	0	0	14458	489	17	4	330	4	SLAMF7	1	160718252	Nonsense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	5422902	160718252	88532369	3	5512										
NID1	0	genome.wustl.edu	37	chr1	236192956	236192956	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tccgtgtcgatggtcaggtgCccatgctcatcgatgccgct	12	13	2	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	1	236192956	236192956	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	silent	c.1632	p.G544	0.789	pfam_G2_nidogen/fibulin_G2F,superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	31	0	0	4	5	55.56	-	-	-	T	236192956	C	T	236192956	2	4	81	1	0	0	0	0	0	0	0	1	10486	726	26	4		4	NID1	1	236192956	Silent	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	75474704	236192956	13057665	4	5513										
SPTBN1	0	genome.wustl.edu	37	chr2	54753679	54753679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gctctgcgcggctttttgagCggtcccgcatcaaggctctg	13	13	3	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	2	54753679	54753679	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.124	p.R42W	1.000	pirsf_Spectrin_bsu,superfamily_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	97	0	0	42	17	28.81	-	-	-	T	54753679	C	T	54753679	3	4	81	1	0	0	0	0	1	0	0	0	15210	759	27	1	126	1	SPTBN1	2	54753679	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		54753679	188445694	5	5514										
TTN	0	genome.wustl.edu	37	chr2	179452261	179452261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	acctaatactctgacatttaCgaatacagccttttctcctg	4	12	2	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	2	179452261	179452261	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.56071	p.V18691L	1.000	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	152	0	0	64	29	31.18	-	-	-	G	179452261	C	G	179452261	3	3	81	1	0	0	0	0	1	0	0	0	16832	536	19	3	44432	3	TTN	2	179452261	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	124698582	179452261	63747112	6	5515										
GRM7	0	genome.wustl.edu	37	chr3	7728066	7728066	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tgtataccaccagtaagaaaGagtgtacaaaagtctgttac	8	7	1	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	3	7728066	7728066	G	C	SNP	GRM7	ENST00000402647	human	ensembl	69_37n	1	known	missense	c.2721	p.K907N	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	137	0	0	118	17	12.59	-	-	-	C	7728066	G	C	7728066	3	2	81	1	0	0	0	0	1	0	0	0	6853	933	33	2	2759	2	GRM7	3	7728066	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		7728066	190294364	7	5516										
ATXN7	0	genome.wustl.edu	37	chr3	63965739	63965739	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ggtgttcttagcgcatcctcAtcaagttccaagttgttgaa	9	9	3	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	3	63965739	63965739	A	C	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	silent	c.648	p.S216	0.034	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	136	0	0	35	14	28.57	-	-	-	C	63965739	A	C	63965739	2	2	81	1	0	0	0	0	0	0	0	1	1219	204	8	5		5	ATXN7	3	63965739	Silent	SNP	A	TCGA-A2-A0YT-01A-11D-A10G-09	56237673	63965739	134056691	8	5517										
ATP6V1A	0	genome.wustl.edu	37	chr3	113507649	113507649	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tctatccaagtattctaacaGtgatgtaatcatctatgtag	6	7	4	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	3	113507649	113507649	G	C	SNP	ATP6V1A	ENST00000273398	human	ensembl	69_37n	1	known	missense	c.806	p.S269T	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	218	0	0	105	17	13.93	-	-	-	C	113507649	G	C	113507649	3	2	81	1	0	0	0	0	1	0	0	0	1181	1029	36	4	828	4	ATP6V1A	3	113507649	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	49541910	113507649	84514781	9	5518										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	120	0	0	39	64	61.54	-	-	-	A	178936091	G	A	178936091	3	1	81	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	65428442	178936091	19086339	10	5519										
INPP4B	0	genome.wustl.edu	37	chr4	143094874	143094874	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	taggtctgcatgggttgctaTaagaggttgtagttgattga	14	3	1	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	4	143094874	143094874	T	G	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.1270	p.I424L	0.997	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	584	0	0	268	50	15.72	-	-	-	G	143094874	T	G	143094874	3	3	81	1	0	0	0	0	1	0	0	0	7807	1406	49	5	1548	5	INPP4B	4	143094874	Missense_Mutation	SNP	T	TCGA-A2-A0YT-01A-11D-A10G-09		143094874	48059402	11	5520										
GAB1	0	genome.wustl.edu	37	chr4	144380559	144380559	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	caagccagcgcctttagaaaTaaaacctttgccagaatggg	9	10	0	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	4	144380559	144380559	T	C	SNP	GAB1	ENST00000262995	human	ensembl	69_37n	1	known	missense	c.1697	p.I566T	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458	196	0	0	207	32	13.39	-	-	-	C	144380559	T	C	144380559	3	2	81	1	0	0	0	0	1	0	0	0	6197	1406	49	5	1727	5	GAB1	4	144380559	Missense_Mutation	SNP	T	TCGA-A2-A0YT-01A-11D-A10G-09	1285685	144380559	46773717	12	5521										
GET4	0	genome.wustl.edu	37	chr7	930646	930646	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	caacatgctggtggagtattCcacgtcccgcggcttccgca	11	14	0	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	7	930646	930646	C	T	SNP	GET4	ENST00000265857	human	ensembl	69_37n	1	known	missense	c.548	p.S183F	1.000	pfam_UPF0363	pfam_UPF0363	-	no_errors	GET4	HGNC	ENSG00000239857	157	0	0	41	12	22.64	-	-	-	T	930646	C	T	930646	3	4	81	1	0	0	0	0	1	0	0	0	6388	855	30	2	566	2	GET4	7	930646	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		930646	158208017	13	5522										
MLL3	0	genome.wustl.edu	37	chr7	151945659	151945660	+	Frame_Shift_Ins	INS	-	-	T													0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	cttcactatcaacttcattaINSgaaatctgtttttccaattc							TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	7	151945659	151945660	-	T	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1860_1859	p.N621fs	0.365:0.435	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	35	0	0	21	29	58	-	-	-	T	151945660	-	T	151945659	7	5	81	1	0	1	1	0	0	0	0	0	9693	407	15	0	13059	0	MLL3	7	151945659	Frame_Shift_Ins	INS	-	TCGA-A2-A0YT-01A-11D-A10G-09	151015013	151945659	7193004	14	5523										
SGCZ	0	genome.wustl.edu	37	chr8	14412342	14412342	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gaagtataagcacctctttcGccatccataaattcccactg	5	13	1	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	8	14412342	14412342	G	A	SNP	SGCZ	ENST00000382080	human	ensembl	69_37n	-1	known	nonsense	c.133	p.R45*	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053	314	0	0	51	71	58.2	-	-	-	A	14412342	G	A	14412342	4	1	81	1	0	0	0	0	0	1	0	0	14292	1095	38	1	833	1	SGCZ	8	14412342	Nonsense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		14412342	131951680	15	5524										
OPLAH	0	genome.wustl.edu	37	chr8	145107769	145107769	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tgagattaccaaacacctccGgcccagtgccgctgaagtca	9	14	1	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	8	145107769	145107769	G	C	SNP	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.505	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	37	0	0	38	8	17.39	-	-	-	C	145107769	G	C	145107769	1	2	81	0	1	0	0	0	0	0	0	0	10949	1116	39	3		3	OPLAH	8	145107769	RNA	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	130695427	145107769	1256253	16	5525										
ODF2	0	genome.wustl.edu	37	chr9	131246313	131246313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ccaaagaggctgagaacagtCgcctgtgcatgcagattaag	12	9	0	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	9	131246313	131246313	C	T	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.1084	p.R362C	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	91	0	0	31	8	20	-	-	-	T	131246313	C	T	131246313	3	4	81	1	0	0	0	0	1	0	0	0	10900	884	31	1	1177	1	ODF2	9	131246313	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		131246313	9967118	17	5526										
ABCC2	0	genome.wustl.edu	37	chr10	101591523	101591523	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tctaaaatcttcaatagcacCgactatccagcatctcagag	5	12	4	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	10	101591523	101591523	C	T	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	silent	c.3039	p.T1013	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	133	0	0	67	44	39.64	-	-	-	T	101591523	C	T	101591523	2	4	81	1	0	0	0	0	0	0	0	1	53	639	23	1		1	ABCC2	10	101591523	Silent	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		101591523	33943224	18	5527										
RGS10	0	genome.wustl.edu	37	chr10	121275051	121275051	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	agtttctggaacatcagaggGtgcggttcttccaggatctt	12	8	4	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	10	121275051	121275051	G	C	SNP	RGS10	ENST00000369103	human	ensembl	69_37n	-1	known	missense	c.369	p.H123Q	0.998	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS10	HGNC	ENSG00000148908	257	0	0	98	25	20.16	-	-	-	C	121275051	G	C	121275051	3	2	81	1	0	0	0	0	1	0	0	0	13377	1252	44	4	184	4	RGS10	10	121275051	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	19683528	121275051	14259696	19	5528										
NUP160	0	genome.wustl.edu	37	chr11	47833684	47833684	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gcagatcaggaaacgagtacTggcgattttatgcacccctc	10	11	1	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	47833684	47833684	T	G	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.2173	p.S725R	0.993	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	232	0	0	72	52	41.94	-	-	-	G	47833684	T	G	47833684	3	3	81	1	0	0	0	0	1	0	0	0	10830	1580	55	5	2217	5	NUP160	11	47833684	Missense_Mutation	SNP	T	TCGA-A2-A0YT-01A-11D-A10G-09		47833684	87172832	20	5529										
OR5D13	0	genome.wustl.edu	37	chr11	55541605	55541605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	cactaccattatgaagatgcGatctgcaagtgggcgccaga	11	10	1	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	55541605	55541605	G	A	SNP	OR5D13	ENST00000361760	human	ensembl	69_37n	1	known	missense	c.692	p.R231Q	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877	194	0	0	78	45	36.59	-	-	-	A	55541605	G	A	55541605	3	1	81	1	0	0	0	0	1	0	0	0	11227	1058	37	1	694	1	OR5D13	11	55541605	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	7707921	55541605	79464911	21	5530										
ZP1	0	genome.wustl.edu	37	chr11	60637860	60637860	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tcagggcacctcccctgcatCgtgagaagaacttcaaaaga	9	12	2	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	60637860	60637860	C	T	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	silent	c.738	p.I246	0.000	superfamily_P_trefoil,smart_P_trefoil	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	82	0	0	25	9	26.47	-	-	-	T	60637860	C	T	60637860	2	4	81	1	0	0	0	0	0	0	0	1	18308	874	31	1		1	ZP1	11	60637860	Silent	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	5096255	60637860	74368656	22	5531										
ZP1	0	genome.wustl.edu	37	chr11	60640695	60640695	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	cccattcaggcatccattttCccacccccatcgcctgctcc	4	21	1	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	60640695	60640695	C	T	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	silent	c.1173	p.F391	0.012	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	113	0	0	42	33	44	-	-	-	T	60640695	C	T	60640695	2	4	81	1	0	0	0	0	0	0	0	1	18308	854	30	2		2	ZP1	11	60640695	Silent	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	2835	60640695	74365821	23	5532										
NPAS4	0	genome.wustl.edu	37	chr11	66189989	66189989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	agctgaccacctcactgtgcGccagcaactcaccctgccct	7	19	2	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	66189989	66189989	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.395	p.R132H	1.000	smart_PAS,pfscan_PAS	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	178	1	0.56	39	26	40	-	-	-	A	66189989	G	A	66189989	3	1	81	1	0	0	0	0	1	0	0	0	10637	1087	38	1	405	1	NPAS4	11	66189989	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	5549294	66189989	68816527	24	5533										
GUCY1A2	0	genome.wustl.edu	37	chr11	106810893	106810893	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	aaatcttttttgaatttcctCaaacttcaaacctagaggta	4	8	3	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	106810893	106810893	C	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	nonsense	c.499	p.E167*	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	17	0	0	12	5	29.41	-	-	-	A	106810893	C	A	106810893	4	1	81	1	0	0	0	0	0	1	0	0	6944	835	29	2	1719	2	GUCY1A2	11	106810893	Nonsense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	40620904	106810893	28195623	25	5534										
BACE1	0	genome.wustl.edu	37	chr11	117164599	117164599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ctactcaccatgctccctccGacagaggccagcacttcaga	7	17	2	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	117164599	117164599	G	A	SNP	BACE1	ENST00000504995	human	ensembl	69_37n	-1	putative	missense	c.481	p.R161W	0.102	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE1	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE1,prints_Pept_A1_BACE	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BACE1	HGNC	ENSG00000186318	99	0	0	24	35	59.32	-	-	-	A	117164599	G	A	117164599	3	1	81	1	0	0	0	0	1	0	0	0	1285	1045	37	1	836	1	BACE1	11	117164599	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	10353706	117164599	17841917	26	5535										
TMPRSS4	0	genome.wustl.edu	37	chr11	117988053	117988053	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ggcccctgatgtaccaatctGaccagtggcatgtggtgggc	14	11	1	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	11	117988053	117988053	G	A	SNP	TMPRSS4	ENST00000437212	human	ensembl	69_37n	1	known	missense	c.1186	p.D396N	0.340	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648	162	0	0	147	58	28.29	-	-	-	A	117988053	G	A	117988053	3	1	81	1	0	0	0	0	1	0	0	0	16344	1290	45	2	1232	2	TMPRSS4	11	117988053	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	823454	117988053	17018463	27	5536										
VWF	0	genome.wustl.edu	37	chr12	6230460	6230460	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	acttccgaaaaggctgcatcGggccgtggatgacctgccgc	13	13	0	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	12	6230460	6230460	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	nonsense	c.100	p.R34*	0.642	pirsf_VWF,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	93	0	0	12	26	68.42	-	-	-	A	6230460	G	A	6230460	4	1	81	1	0	0	0	0	0	1	0	0	17343	1124	39	1	8541	1	VWF	12	6230460	Nonsense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		6230460	127621435	28	5537										
ZFC3H1	0	genome.wustl.edu	37	chr12	72027055	72027055	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	aataattacttgttcctgaaGcttcttcaaaaacattctgt	4	8	3	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	12	72027055	72027055	G	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.2674	p.L892V	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	101	0	0	150	18	10.71	-	-	-	C	72027055	G	C	72027055	3	2	81	1	0	0	0	0	1	0	0	0	17729	971	34	4	3387	4	ZFC3H1	12	72027055	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	65796595	72027055	61824840	29	5538										
DNAH10	0	genome.wustl.edu	37	chr12	124414242	124414242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	aattctgaacacgtacttaaCgaaagccttccagcaacggg	8	11	1	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	12	124414242	124414242	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.12194	p.T4065M	0.997	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	111	0	0	42	12	22.22	-	-	-	T	124414242	C	T	124414242	3	4	81	1	0	0	0	0	1	0	0	0	4634	536	19	1	12476	1	DNAH10	12	124414242	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	52387187	124414242	9437653	30	5539										
VPS36	0	genome.wustl.edu	37	chr13	52990193	52990193	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gacattcccacaagcttagcAaactcttctgatgttaggga	8	10	2	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	13	52990193	52990193	A	G	SNP	VPS36	ENST00000378060	human	ensembl	69_37n	-1	known	silent	c.1026	p.F342	1.000	pfam_EAP30	pfam_EAP30,pfam_VPS36_GLUE	-	no_errors	VPS36	HGNC	ENSG00000136100	128	0	0	64	17	20.99	-	-	-	G	52990193	A	G	52990193	2	3	81	1	0	0	0	0	0	0	0	1	17301	127	5	5		5	VPS36	13	52990193	Silent	SNP	A	TCGA-A2-A0YT-01A-11D-A10G-09		52990193	62179685	31	5540										
LECT1	0	genome.wustl.edu	37	chr13	53298164	53298164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gatgctctgtttggtcacggCgcccacctcaggaatacgag	12	12	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	13	53298164	53298164	C	T	SNP	LECT1	ENST00000377962	human	ensembl	69_37n	-1	known	missense	c.436	p.A146T	0.732	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110	122	0	0	41	19	31.67	-	-	-	T	53298164	C	T	53298164	3	4	81	1	0	0	0	0	1	0	0	0	8766	768	27	1	584	1	LECT1	13	53298164	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	307971	53298164	61871714	32	5541										
GPC6	0	genome.wustl.edu	37	chr13	93879855	93879855	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	cagcctggcggacatcccctAccaggagatcgcaggtaagc	12	14	0	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	13	93879855	93879855	A	T	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.146	p.Y49F	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	60	0	0	14	19	57.58	-	-	-	T	93879855	A	T	93879855	3	4	81	1	0	0	0	0	1	0	0	0	6652	391	14	5	148	5	GPC6	13	93879855	Missense_Mutation	SNP	A	TCGA-A2-A0YT-01A-11D-A10G-09	40581691	93879855	21290023	33	5542										
MAX	0	genome.wustl.edu	37	chr14	65569045	65569045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gctctccacctcgatgtcatCgttatcgctcatttcctacg	6	15	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	14	65569045	65569045	C	T	SNP	MAX	ENST00000358664	human	ensembl	69_37n	-1	known	missense	c.13	p.D5N	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MAX	HGNC	ENSG00000125952	61	0	0	7	13	65	-	-	-	T	65569045	C	T	65569045	3	4	81	1	0	0	0	0	1	0	0	0	9410	884	31	1	829	1	MAX	14	65569045	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		65569045	41780495	34	5543										
TMC7	0	genome.wustl.edu	37	chr16	19063095	19063095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tcctgttggtgttgttgatcGggctgtgtttggcaataata	13	5	0	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	16	19063095	19063095	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.1828	p.G610R	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	309	0	0	157	32	16.93	-	-	-	A	19063095	G	A	19063095	3	1	81	1	0	0	0	0	1	0	0	0	16085	1116	39	1	1878	1	TMC7	16	19063095	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		19063095	71291658	35	5544										
PLD2	0	genome.wustl.edu	37	chr17	4722079	4722079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tttctctcaggaccctgtgtCgtggggagtattcaatcctg	11	10	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	17	4722079	4722079	C	T	SNP	PLD2	ENST00000263088	human	ensembl	69_37n	1	known	missense	c.2134	p.R712C	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219	173	0	0	33	63	65.62	-	-	-	T	4722079	C	T	4722079	3	4	81	1	0	0	0	0	1	0	0	0	12120	884	31	1	2212	1	PLD2	17	4722079	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		4722079	76473131	36	5545										
TP53	0	genome.wustl.edu	37	chr17	7577517	7577517	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	acctggagtcttccagtgtgAtgatggtgaggatgggcctc	15	8	1	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	17	7577517	7577517	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.764	p.I255S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	146	0	0	10	30	75	-	-	-	C	7577517	A	C	7577517	3	2	81	1	0	0	0	0	1	0	0	0	16477	333	12	5	526	5	TP53	17	7577517	Missense_Mutation	SNP	A	TCGA-A2-A0YT-01A-11D-A10G-09	2855438	7577517	73617693	37	5546										
OR7G2	0	genome.wustl.edu	37	chr19	9213395	9213395	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gccagttcacagaagaagagCgggatttccaggtctgtgca	13	9	2	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	19	9213395	9213395	C	T	SNP	OR7G2	ENST00000305456	human	ensembl	69_37n	-1	known	silent	c.588	p.P196	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G2	HGNC	ENSG00000170923	101	0	0	55	12	17.65	-	-	-	T	9213395	C	T	9213395	2	4	81	1	0	0	0	0	0	0	0	1	11296	755	27	1		1	OR7G2	19	9213395	Silent	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		9213395	49915588	38	5547										
NLRP7	0	genome.wustl.edu	37	chr19	55449557	55449557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gcagaaatctgtccagaggcGaagagagcgaagatcctgcc	13	10	1	4			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	19	55449557	55449557	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.2068	p.R690C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	68	0	0	9	24	72.73	-	-	-	A	55449557	G	A	55449557	3	1	81	1	0	0	0	0	1	0	0	0	10554	1058	37	1	1157	1	NLRP7	19	55449557	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	46236162	55449557	3679426	39	5548										
NLRP9	0	genome.wustl.edu	37	chr19	56243942	56243942	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gccctcagactcagataaccCattcctccggagatccccat	6	17	2	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	19	56243942	56243942	C	A	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.1255	p.G419W	0.006	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	133	0	0	52	12	18.75	-	-	-	A	56243942	C	A	56243942	3	1	81	1	0	0	0	0	1	0	0	0	10556	594	21	4	1752	4	NLRP9	19	56243942	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	794385	56243942	2885041	40	5549										
C20orf132	0	genome.wustl.edu	37	chr20	35788533	35788533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	tggtgacaaagacctcctggCgcatggaactggacagagaa	13	9	0	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	20	35788533	35788533	C	T	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.695	p.R232H	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	67	0	0	38	13	25.49	-	-	-	T	35788533	C	T	35788533	3	4	81	1	0	0	0	0	1	0	0	0	2106	768	27	1	2521	1	C20orf132	20	35788533	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		35788533	27236987	41	5550										
CECR5	0	genome.wustl.edu	37	chr22	17623996	17623996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gacctctcttaccttcaatgCgggggaagtcattcctcggg	11	12	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	22	17623996	17623996	C	T	SNP	CECR5	ENST00000336737	human	ensembl	69_37n	-1	known	missense	c.563	p.R188H	0.964	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998	89	0	0	14	26	63.41	-	-	-	T	17623996	C	T	17623996	3	4	81	1	0	0	0	0	1	0	0	0	3236	768	27	1	724	1	CECR5	22	17623996	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09		17623996	33680570	42	5551										
BCL2L13	0	genome.wustl.edu	37	chr22	18185061	18185061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gcttttggaattgacaagacGtggtcaagaacctttgagcg	12	7	1	4			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	22	18185061	18185061	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	69_37n	1	known	missense	c.509	p.R170H	0.953	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L13	HGNC	ENSG00000099968	158	0	0	36	39	52	-	-	-	A	18185061	G	A	18185061	3	1	81	1	0	0	0	0	1	0	0	0	1375	1145	40	1	527	1	BCL2L13	22	18185061	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	561065	18185061	33119505	43	5552										
OFD1	0	genome.wustl.edu	37	chrX	13778585	13778585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	aagcccactagcagcaaagaGcccaccatctctgcacttgc	7	16	1	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	13778585	13778585	G	A	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.2006	p.S669N	0.001	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	86	0	0	39	32	45.07	-	-	-	A	13778585	G	A	13778585	3	1	81	1	0	0	0	0	1	0	0	0	10911	971	34	4	2068	4	OFD1	23	13778585	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09		13778585	141491975	44	5553										
MAP7D2	0	genome.wustl.edu	37	chrX	20070998	20070998	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gtctacatgttcacttgcctCggtctggggaataggatatt	11	8	3	0			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	20070998	20070998	C	G	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	missense	c.593	p.R198P	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	248	0	0	155	22	12.43	-	-	-	G	20070998	C	G	20070998	3	3	81	1	0	0	0	0	1	0	0	0	9339	884	31	3	1776	3	MAP7D2	23	20070998	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	6292413	20070998	135199562	45	5554										
MAGEB16	0	genome.wustl.edu	37	chrX	35820494	35820494	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ctgctgctaaggcagagagtCctcttgaggttcctcagagt	12	10	2	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	35820494	35820494	C	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	missense	c.277	p.P93T	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	124	1	0.8	49	44	47.31	-	-	-	A	35820494	C	A	35820494	3	1	81	1	0	0	0	0	1	0	0	0	9245	855	30	2	183	2	MAGEB16	23	35820494	Missense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	15749496	35820494	119450066	46	5555										
CASK	0	genome.wustl.edu	37	chrX	41419042	41419042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	gagtcattacctcacaggacGaagactgagtgcggtaactt	11	9	2	2			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	41419042	41419042	G	A	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.1727	p.S576L	0.998	superfamily_SH3_domain,superfamily_PDZ	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	182	0	0	78	47	37.6	-	-	-	A	41419042	G	A	41419042	3	1	81	1	0	0	0	0	1	0	0	0	2690	1059	37	1	1093	1	CASK	23	41419042	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	5598548	41419042	113851518	47	5556										
MSN	0	genome.wustl.edu	37	chrX	64957138	64957138	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	ccaaggagcgtcaagaagctGaagaggccaaggaggccttg	15	9	1	3			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	64957138	64957138	G	A	SNP	MSN	ENST00000360270	human	ensembl	69_37n	1	known	missense	c.1189	p.E397K	1.000	pirsf_ERM,pfam_ERM_C	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	54	0	0	23	12	34.29	-	-	-	A	64957138	G	A	64957138	3	1	81	1	0	0	0	0	1	0	0	0	9957	1291	45	2	1227	2	MSN	23	64957138	Missense_Mutation	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	23538096	64957138	90313422	48	5557										
RHOXF2	0	genome.wustl.edu	37	chrX	119293026	119293026	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	agcaggagaaaagttaaagtCggcaggagcccaaggcggag	16	7	0	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	119293026	119293026	C	A	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	1	known	nonsense	c.185	p.S62*	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	88	0	0	27	23	46	-	-	-	A	119293026	C	A	119293026	4	1	81	1	0	0	0	0	0	1	0	0	13432	893	31	3	1074	3	RHOXF2	23	119293026	Nonsense_Mutation	SNP	C	TCGA-A2-A0YT-01A-11D-A10G-09	54335888	119293026	35977534	49	5558										
GRIA3	0	genome.wustl.edu	37	chrX	122536950	122536950	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	4	0.999962424367031	0.698283188849227	0.807389937106918	0.66818477553676	0.523809523809524	1	0	aagtcagtggctctcgaaaaGtaagtaaccaaaacagacat	8	8	2	1			TCGA-A2-A0YT-01A-11D-A10G-09	TCGA-A2-A0YT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	827c6a2f-fb1b-4845-9cb1-11013a16da3f	75eb756e-e38e-4f94-867e-b4eabdf71c79	X	122536950	122536950	G	C	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	splice_site	c.1185+1	e8+1	1.000	-	-	-	no_errors	GRIA3	HGNC	ENSG00000125675	162	0	0	116	25	17.73	-	-	-	C	122536950	G	C	122536950	5	2	81	1	0	0	0	0	0	0	1	0	6820	1043	36	4	1216	4	GRIA3	23	122536950	Splice_Site	SNP	G	TCGA-A2-A0YT-01A-11D-A10G-09	3243924	122536950	32733610	50	5559										
LDLRAD1	0	genome.wustl.edu	37	chr1	54479914	54479914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cttggccgccctgacctgggGtgcatgatgggagtccaaga	15	11	0	3			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	54479914	54479914	G	A	SNP	LDLRAD1	ENST00000371360	human	ensembl	69_37n	-1	known	missense	c.197	p.T66I	0.002	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985	21	0	0	31	13	29.55	-	-	-	A	54479914	G	A	54479914	3	1	82	1	0	0	0	0	1	0	0	0	8759	1261	44	4	436	4	LDLRAD1	1	54479914	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		54479914	194770707	1	5560										
MCOLN2	0	genome.wustl.edu	37	chr1	85397158	85397158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	actgaacagccacaccaagaTgctcttctgctggatttggg	10	11	2	2			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	85397158	85397158	T	G	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1429	p.I477L	0.001	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	33	0	0	18	16	47.06	-	-	-	G	85397158	T	G	85397158	3	3	82	1	0	0	0	0	1	0	0	0	9467	1464	51	5	283	5	MCOLN2	1	85397158	Missense_Mutation	SNP	T	TCGA-A2-A1FV-01A-11D-A13L-09	30917244	85397158	163853463	2	5561										
GPR61	0	genome.wustl.edu	37	chr1	110086977	110086977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	acagctacctccgtcctgccGcctcaccccggctggagtca	9	19	2	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	110086977	110086977	G	A	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	1	known	missense	c.1333	p.A445T	0.617	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	17	0	0	17	7	29.17	-	-	-	A	110086977	G	A	110086977	3	1	82	1	0	0	0	0	1	0	0	0	6752	1087	38	1	1335	1	GPR61	1	110086977	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	24689819	110086977	139163644	3	5562										
OR2L3	0	genome.wustl.edu	37	chr1	248224884	248224884	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	aggaggtgatgggggccctgAcacgagtgagtcagagaatc	17	7	1	4			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	248224884	248224884	A	G	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	missense	c.901	p.T301A	0.052	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	46	0	0	29	24	45.28	-	-	-	G	248224884	A	G	248224884	3	3	82	1	0	0	0	0	1	0	0	0	11081	275	10	5	903	5	OR2L3	1	248224884	Missense_Mutation	SNP	A	TCGA-A2-A1FV-01A-11D-A13L-09	138137907	248224884	1025737	4	5563										
SSFA2	0	genome.wustl.edu	37	chr2	182765477	182765477	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cctgaagaaattctttataaTcttggatttggacgtgatga	9	5	2	4			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	182765477	182765477	T	G	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.558	p.N186K	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	86	0	0	47	60	56.07	-	-	-	G	182765477	T	G	182765477	3	3	82	1	0	0	0	0	1	0	0	0	15274	1432	50	5	584	5	SSFA2	2	182765477	Missense_Mutation	SNP	T	TCGA-A2-A1FV-01A-11D-A13L-09		182765477	60433896	5	5564										
GIGYF2	0	genome.wustl.edu	37	chr2	233655446	233655446	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gctggcgggaacacatggaaCgacgtcggaggtttgagttt	16	7	0	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	233655446	233655446	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	nonsense	c.817	p.R273*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	91	0	0	64	76	54.29	-	-	-	T	233655446	C	T	233655446	4	4	82	1	0	0	0	0	0	1	0	0	6430	528	19	1	851	1	GIGYF2	2	233655446	Nonsense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	50889969	233655446	9543927	6	5565										
PARP14	0	genome.wustl.edu	37	chr3	122419979	122419979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tgaagagagagggcagactcCtaccgggcaatgccaccatc	12	12	0	4			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	122419979	122419979	C	G	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.2578	p.L860V	0.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	20	0	0	12	10	45.45	-	-	-	G	122419979	C	G	122419979	3	3	82	1	0	0	0	0	1	0	0	0	11531	680	24	4	2600	4	PARP14	3	122419979	Missense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09		122419979	75602451	7	5566										
SRPRB	0	genome.wustl.edu	37	chr3	133524816	133524816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	caacgctgttgtcagtagtgGtggcggttcttgcggtgctg	16	8	2	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	133524816	133524816	G	A	SNP	SRPRB	ENST00000466490	human	ensembl	69_37n	1	known	missense	c.124	p.V42M	0.838	NULL	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA	-	no_errors	SRPRB	HGNC	ENSG00000144867	38	0	0	33	18	35.29	-	-	-	A	133524816	G	A	133524816	3	1	82	1	0	0	0	0	1	0	0	0	15254	1261	44	4	126	4	SRPRB	3	133524816	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	11104837	133524816	64497614	8	5567										
KIAA1109	0	genome.wustl.edu	37	chr4	123227196	123227197	+	Frame_Shift_Ins	INS	-	-	A													0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cacagcctgtggcctttgatINSagaggtaagataaagtcaat							TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	4	123227196	123227197	-	A	INS	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	frame_shift_ins	c.9837_9838	p.R3279fs	0.992:1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	73	0	0	43	26	37.68	-	-	-	A	123227197	-	A	123227196	7	5	82	1	0	1	1	0	0	0	0	0	8260	1403	49	0	10055	0	KIAA1109	4	123227196	Frame_Shift_Ins	INS	-	TCGA-A2-A1FV-01A-11D-A13L-09		123227196	67927080	9	5568										
NUP155	0	genome.wustl.edu	37	chr5	37310654	37310654	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	taggtaataaagtatcatacCttagaacaaattgcatcatc	5	7	2	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	37310654	37310654	C	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2628	p.K876N	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	36	0	0	45	19	29.69	-	-	-	G	37310654	C	G	37310654	3	3	82	1	0	0	0	0	1	0	0	0	10829	695	24	4	1599	4	NUP155	5	37310654	Missense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09		37310654	143604606	10	5569										
GRIA1	0	genome.wustl.edu	37	chr5	153143997	153143997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	ttccctttggcctgcaggtcCctgtctggtcgcatcgttgg	12	13	1	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153143997	153143997	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	silent	c.1857	p.S619	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	73	0	0	41	16	28.07	-	-	-	T	153143997	C	T	153143997	2	4	82	1	0	0	0	0	0	0	0	1	6818	610	22	4		4	GRIA1	5	153143997	Silent	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	115833343	153143997	27771263	11	5570										
GRIA1	0	genome.wustl.edu	37	chr5	153175111	153175111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	ctgaaaagcaaatggtggtaCgataaaggggaatgtggaag	15	3	0	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153175111	153175111	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	silent	c.2376	p.Y792	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	111	0	0	71	23	24.47	-	-	-	T	153175111	C	T	153175111	2	4	82	1	0	0	0	0	0	0	0	1	6818	547	19	1		1	GRIA1	5	153175111	Silent	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	31114	153175111	27740149	12	5571										
SHPRH	0	genome.wustl.edu	37	chr6	146240555	146240555	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	aggatcacgcactcttagtcGttctgtagccattgcaagtt	9	10	3	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	146240555	146240555	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	nonsense	c.4093	p.R1365*	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	57	0	0	48	38	44.19	-	-	-	A	146240555	G	A	146240555	4	1	82	1	0	0	0	0	0	1	0	0	14380	1153	40	1	1023	1	SHPRH	6	146240555	Nonsense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		146240555	24874512	13	5572										
UST	0	genome.wustl.edu	37	chr6	149275038	149275038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	ttaaaaatataagtactgccGaacaaccctatttattcact	3	9	1	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	149275038	149275038	G	A	SNP	UST	ENST00000367463	human	ensembl	69_37n	1	known	missense	c.478	p.E160K	0.999	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	-	no_errors	UST	HGNC	ENSG00000111962	88	0	0	93	19	16.96	-	-	-	A	149275038	G	A	149275038	3	1	82	1	0	0	0	0	1	0	0	0	17190	1059	37	1	492	1	UST	6	149275038	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	3034483	149275038	21840029	14	5573										
TCP10	0	genome.wustl.edu	37	chr6	167787875	167787876	+	Frame_Shift_Del	DEL	CT	CT	-													0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tctggggcagaactggcgaaCtcgtcagcttgaacgcggct							TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	167787875	167787876	CT	-	DEL	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	frame_shift_del	c.753_752	p.E251fs	0.000:0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	122	0	0	40	61	59.22	-	-	-	-	167787876	CT	-	167787875	7	5	82	1	0	1	0	1	0	0	0	0	15805	564	20	0	235	0	TCP10	6	167787875	Frame_Shift_Del	DEL	CT	TCGA-A2-A1FV-01A-11D-A13L-09	18512837	167787875	3327192	15	5574										
TBP	0	genome.wustl.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	170871004	170871004	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	1	known	silent	c.180	p.Q60	0.991	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	17	0	0	40	8	16.67	-	-	-	A	170871004	G	A	170871004	2	1	82	1	0	0	0	0	0	0	0	1	15739	962	34	4		4	TBP	6	170871004	Silent	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	3083129	170871004	244063	16	5575										
ARFGEF1	0	genome.wustl.edu	37	chr8	68130367	68130367	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gcaagttgttgtcatccattCagctttctggggaaaaaagt	10	7	3	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	68130367	68130367	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.4345	p.E1449K	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	27	0	0	46	13	22.03	-	-	-	T	68130367	C	T	68130367	3	4	82	1	0	0	0	0	1	0	0	0	854	835	29	2	1240	2	ARFGEF1	8	68130367	Missense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09		68130367	78233655	17	5576										
UBE2W	0	genome.wustl.edu	37	chr8	74717957	74717957	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	aaaaagaattatccggtggtCgtctctgaaacaaaaaataa	7	6	1	2			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	74717957	74717957	C	T	SNP	UBE2W	ENST00000419880	human	ensembl	69_37n	-1	known	missense	c.404	p.R135Q	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2W	HGNC	ENSG00000104343	105	0	0	121	101	45.5	-	-	-	T	74717957	C	T	74717957	3	4	82	1	0	0	0	0	1	0	0	0	16974	884	31	1	92	1	UBE2W	8	74717957	Missense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	6587590	74717957	71646065	18	5577										
TRPM6	0	genome.wustl.edu	37	chr9	77354721	77354721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	caggaagaaaggacttgacaAtgaaaacttgtcccggcttg	11	8	0	3			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	77354721	77354721	A	G	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.5417	p.I1806T	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	42	0	0	23	29	55.77	-	-	-	G	77354721	A	G	77354721	3	3	82	1	0	0	0	0	1	0	0	0	16686	101	4	5	687	5	TRPM6	9	77354721	Missense_Mutation	SNP	A	TCGA-A2-A1FV-01A-11D-A13L-09		77354721	63858710	19	5578										
RMI1	0	genome.wustl.edu	37	chr9	86617623	86617623	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cctcttcaataccaaaagttCctggaagggttgcagaaatg	9	9	2	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	86617623	86617623	C	T	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	silent	c.1722	p.F574	0.982	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	82	0	0	88	22	20	-	-	-	T	86617623	C	T	86617623	2	4	82	1	0	0	0	0	0	0	0	1	13481	854	30	2		2	RMI1	9	86617623	Silent	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	9262902	86617623	54595808	20	5579										
PTPN3	0	genome.wustl.edu	37	chr9	112151535	112151535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gccctcgttctgtgagagtcGtcaacatgacaatgagtgac	11	10	2	4			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	112151535	112151535	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	69_37n	-1	known	missense	c.2231	p.T744M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN3	HGNC	ENSG00000070159	39	0	0	24	24	50	-	-	-	A	112151535	G	A	112151535	3	1	82	1	0	0	0	0	1	0	0	0	12872	1145	40	1	530	1	PTPN3	9	112151535	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	25533912	112151535	29061896	21	5580										
SVEP1	0	genome.wustl.edu	37	chr9	113219551	113219551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tttacctgtatatccaagtgGacagagacaaacataaccac	6	10	0	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	113219551	113219551	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.3658	p.P1220S	0.705	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	74	0	0	51	16	23.88	-	-	-	A	113219551	G	A	113219551	3	1	82	1	0	0	0	0	1	0	0	0	15511	1174	41	2	7169	2	SVEP1	9	113219551	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	1068016	113219551	27993880	22	5581										
LOXL4	0	genome.wustl.edu	37	chr10	100013398	100013398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gtagatctgtgtggagaagcGcaataggcggcggtatccgt	16	7	1	2			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	10	100013398	100013398	G	T	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	missense	c.1747	p.R583S	1.000	pfam_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	67	0	0	55	26	32.1	-	-	-	T	100013398	G	T	100013398	3	4	82	1	0	0	0	0	1	0	0	0	8968	1087	38	3	543	3	LOXL4	10	100013398	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		100013398	35521349	23	5582										
HOXC4	0	genome.wustl.edu	37	chr12	54448950	54448950	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cactcccagagcgccacgccGccggagcagcaacgggcaga	13	17	0	2			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	54448950	54448950	G	A	SNP	HOXC4	ENST00000303406	human	ensembl	69_37n	1	known	silent	c.756	p.P252	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	HGNC	ENSG00000198353	10	0	0	4	6	60	-	-	-	A	54448950	G	A	54448950	2	1	82	1	0	0	0	0	0	0	0	1	7364	1074	38	1		1	HOXC4	12	54448950	Silent	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		54448950	79402945	24	5583										
ZFC3H1	0	genome.wustl.edu	37	chr12	72037937	72037937	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tcgattgtactgttcttcctGatttgagagatctcgaattt	8	7	2	3			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	72037937	72037937	G	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.1441	p.Q481K	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	210	0	0	139	101	42.08	-	-	-	T	72037937	G	T	72037937	3	4	82	1	0	0	0	0	1	0	0	0	17729	1299	45	2	4652	2	ZFC3H1	12	72037937	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	17588987	72037937	61813958	25	5584										
RYR3	0	genome.wustl.edu	37	chr15	33961576	33961576	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tcaacatgctgcttaactttCaactgggagagaactgcccc	8	12	2	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	33961576	33961576	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	nonsense	c.5641	p.Q1881*	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	61	0	0	36	32	47.06	-	-	-	T	33961576	C	T	33961576	4	4	82	1	0	0	0	0	0	1	0	0	13856	827	29	2	5787	2	RYR3	15	33961576	Nonsense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09		33961576	68569816	26	5585										
ABCC6	0	genome.wustl.edu	37	chr16	16255417	16255417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gagctccacattggccgcaaGccacctgcaaagggaagcga	12	13	0	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	16255417	16255417	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.3511	p.L1171F	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	22	0	0	13	18	58.06	-	-	-	A	16255417	G	A	16255417	3	1	82	1	0	0	0	0	1	0	0	0	57	971	34	4	1028	4	ABCC6	16	16255417	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		16255417	74099336	27	5586										
CDH1	0	genome.wustl.edu	37	chr16	68842417	68842418	+	Frame_Shift_Ins	INS	-	-	G													0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gagagactgggttattcctcINSccatcagctgcccagaaaat							TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	68842417	68842418	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.478_479	p.P160fs	1.000:0.999	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	65	0	0	16	17	51.52	-	-	-	G	68842418	-	G	68842417	7	5	82	1	0	1	1	0	0	0	0	0	3124	855	30	0	492	0	CDH1	16	68842417	Frame_Shift_Ins	INS	-	TCGA-A2-A1FV-01A-11D-A13L-09	52587000	68842417	21512336	28	5587										
TBC1D26	0	genome.wustl.edu	37	chr17	15640806	15640806	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gttgccttacagtgagatggAgctgccccacgtcagtgccc	12	13	1	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	15640806	15640806	A	C	SNP	TBC1D26	ENST00000437605	human	ensembl	69_37n	1	known	missense	c.167	p.E56A	0.285	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946	47	0	0	27	10	27.03	-	-	-	C	15640806	A	C	15640806	3	2	82	1	0	0	0	0	1	0	0	0	15708	304	11	5	177	5	TBC1D26	17	15640806	Missense_Mutation	SNP	A	TCGA-A2-A1FV-01A-11D-A13L-09		15640806	65554404	29	5588										
CCL13	0	genome.wustl.edu	37	chr17	32683553	32683554	+	Frame_Shift_Ins	INS	-	-	C													0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	ttaaccttcaacatgaaagtINSctctgcagtgcttctgtgcc							TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	32683553	32683554	-	C	INS	CCL13	ENST00000225844	human	ensembl	69_37n	1	known	frame_shift_ins	c.8_9	p.S4fs	0.324:0.310	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL13	HGNC	ENSG00000181374	122	0	0	74	42	36.21	-	-	-	C	32683554	-	C	32683553	7	5	82	1	0	1	1	0	0	0	0	0	2911	1667	58	0	10	0	CCL13	17	32683553	Frame_Shift_Ins	INS	-	TCGA-A2-A1FV-01A-11D-A13L-09	17042747	32683553	48511657	30	5589										
TTC25	0	genome.wustl.edu	37	chr17	40091966	40091966	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gggaattcagagttggcattCagaaagcccaggaagccatc	12	9	2	2			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	40091966	40091966	C	T	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	82	0	0	37	22	37.29	-	-	-	T	40091966	C	T	40091966	1	4	82	0	1	0	0	0	0	0	0	0	16790	827	29	2		2	TTC25	17	40091966	RNA	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	7408413	40091966	41103244	31	5590										
SGCA	0	genome.wustl.edu	37	chr17	48248012	48248012	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tttccacaggctgaagagagAcctggctacctccgagtgag	12	11	0	4			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	48248012	48248012	A	G	SNP	SGCA	ENST00000262018	human	ensembl	69_37n	1	known	missense	c.968	p.D323G	1.000	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823	35	0	0	20	17	45.95	-	-	-	G	48248012	A	G	48248012	3	3	82	1	0	0	0	0	1	0	0	0	14287	275	10	5	998	5	SGCA	17	48248012	Missense_Mutation	SNP	A	TCGA-A2-A1FV-01A-11D-A13L-09	8156046	48248012	32947198	32	5591										
RAB37	0	genome.wustl.edu	37	chr17	72739280	72739280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	cttcccagatctgggacaccGctgggcaggaacggttccga	13	13	1	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	72739280	72739280	G	A	SNP	RAB37	ENST00000392614	human	ensembl	69_37n	1	known	missense	c.274	p.A92T	0.999	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794	66	0	0	35	13	27.08	-	-	-	A	72739280	G	A	72739280	3	1	82	1	0	0	0	0	1	0	0	0	13010	1087	38	1	576	1	RAB37	17	72739280	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	24491268	72739280	8455930	33	5592										
ICAM4	0	genome.wustl.edu	37	chr19	10398280	10398280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	aatacactttgcgctgccacGtgacgcaggtgttcccggtg	12	12	0	1			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	19	10398280	10398280	G	A	SNP	ICAM4	ENST00000380770	human	ensembl	69_37n	1	known	missense	c.463	p.V155M	0.886	prints_ICAM_VCAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371	44	0	0	16	16	50	-	-	-	A	10398280	G	A	10398280	3	1	82	1	0	0	0	0	1	0	0	0	7536	1145	40	1	469	1	ICAM4	19	10398280	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09		10398280	48730703	34	5593										
DLGAP4	0	genome.wustl.edu	37	chr20	35060343	35060343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gcagcacctttccccgcatcCactacaactcccacttcgag	5	19	0	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	35060343	35060343	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.223	p.H75Y	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	58	0	0	27	19	41.3	-	-	-	T	35060343	C	T	35060343	3	4	82	1	0	0	0	0	1	0	0	0	4598	594	21	4	225	4	DLGAP4	20	35060343	Missense_Mutation	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09		35060343	27965177	35	5594										
PHACTR3	0	genome.wustl.edu	37	chr20	58381222	58381222	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	tgaagaaagacaggagatccGgcagcagatcgagatgaagc	14	7	0	7			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	58381222	58381222	G	C	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	missense	c.1301	p.R434P	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	37	0	0	25	4	13.79	-	-	-	C	58381222	G	C	58381222	3	2	82	1	0	0	0	0	1	0	0	0	11885	1116	39	3	1331	3	PHACTR3	20	58381222	Missense_Mutation	SNP	G	TCGA-A2-A1FV-01A-11D-A13L-09	23320879	58381222	4644298	36	5595										
USP9X	0	genome.wustl.edu	37	chrX	40990740	40990741	+	Frame_Shift_Del	DEL	AG	AG	-													0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gtggttccagttttgccgaaAggggaattagaagtgctttt							TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	40990740	40990741	AG	-	DEL	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	frame_shift_del	c.273_274	p.E93fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	139	0	0	68	74	50.68	-	-	-	-	40990741	AG	-	40990740	7	5	82	1	0	1	0	1	0	0	0	0	17187	69	3	0	283	0	USP9X	23	40990740	Frame_Shift_Del	DEL	AG	TCGA-A2-A1FV-01A-11D-A13L-09		40990740	114279820	37	5596										
SMARCA1	0	genome.wustl.edu	37	chrX	128657222	128657222	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.904872247913239	0.964090909090909	0	1.09555785123967	0.142857142857143	0.62934362934363	0	gccgcggtggcttcggtggcCgcggcggccgctccctcctc	16	18	0	0			TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	128657222	128657222	C	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	silent	c.126	p.A42	0.999	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	61	0	0	87	51	36.96	-	-	-	T	128657222	C	T	128657222	2	4	82	1	0	0	0	0	0	0	0	1	14857	639	23	1		1	SMARCA1	23	128657222	Silent	SNP	C	TCGA-A2-A1FV-01A-11D-A13L-09	87666482	128657222	26613338	38	5597										
SLC2A7	0	genome.wustl.edu	37	chr1	9079361	9079361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	caggatggcggggatgatggCaaagatgttgttgatcagca	16	5	1	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	9079361	9079361	C	T	SNP	SLC2A7	ENST00000400906	human	ensembl	69_37n	-1	known	missense	c.343	p.A115T	0.937	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241	29	0	0	33	19	36.54	-	-	-	T	9079361	C	T	9079361	3	4	83	1	0	0	0	0	1	0	0	0	14639	710	25	4	1231	4	SLC2A7	1	9079361	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		9079361	240171260	1	5598										
BMP8B	0	genome.wustl.edu	37	chr1	40230633	40230633	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gctgagcctcagtttccacaTctgaagcctggagtccttgg	11	12	2	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	40230633	40230633	T	A	SNP	BMP8B	ENST00000397360	human	ensembl	69_37n	-1	known	missense	c.721	p.M241L	0.658	NULL	pfam_TGF-b_N	-	no_errors	BMP8B	HGNC	ENSG00000116985	8	0	0	3	4	57.14	-	-	-	A	40230633	T	A	40230633	3	1	83	1	0	0	0	0	1	0	0	0	1472	1450	50	5		5	BMP8B	1	40230633	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	31151272	40230633	209019988	2	5599										
CACHD1	0	genome.wustl.edu	37	chr1	65157044	65157044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cacaggaggacagtgaaaatCctccatgcaacaatgacccc	8	13	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	65157044	65157044	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.3625	p.P1209S	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	41	0	0	62	29	31.87	-	-	-	T	65157044	C	T	65157044	3	4	83	1	0	0	0	0	1	0	0	0	2562	855	30	2	3578	2	CACHD1	1	65157044	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	24926411	65157044	184093577	3	5600										
ZNF648	0	genome.wustl.edu	37	chr1	182025787	182025787	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ggctgcgcgaaggccacgccGcagtcagcgcacttgaaagg	15	13	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	182025787	182025787	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	silent	c.1359	p.C453	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	19	0	0	37	10	21.28	-	-	-	A	182025787	G	A	182025787	2	1	83	1	0	0	0	0	0	0	0	1	18159	1079	38	1		1	ZNF648	1	182025787	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	116868743	182025787	67224834	4	5601										
CACNA1S	0	genome.wustl.edu	37	chr1	201009077	201009077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgccctctggggcctctcgtCctttcagtagctctgttgcc	10	15	4	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	201009077	201009077	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.5504	p.G1835E	0.054	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	60	0	0	260	34	11.56	-	-	-	T	201009077	C	T	201009077	3	4	83	1	0	0	0	0	1	0	0	0	2572	855	30	2	121	2	CACNA1S	1	201009077	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	18983290	201009077	48241544	5	5602										
SRGAP2	0	genome.wustl.edu	37	chr1	206611342	206611342	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cccctggctggggaccagaaCgaccatgacatggattccat	11	13	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	206611342	206611342	C	T	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	nonsense	c.1402	p.R468*	0.995	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	57	0	0	19	64	77.11	-	-	-	T	206611342	C	T	206611342	4	4	83	1	0	0	0	0	0	1	0	0	15237	535	19	1	1452	1	SRGAP2	1	206611342	Nonsense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	5602265	206611342	42639279	6	5603										
DISC1	0	genome.wustl.edu	37	chr1	231885724	231885724	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gaacaagagaaaatcagcctGcactttcaacttccttcaag	6	11	3	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	231885724	231885724	G	T	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	silent	c.1170	p.L390	0.869	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	52	0	0	131	29	18.12	-	-	-	T	231885724	G	T	231885724	2	4	83	1	0	0	0	0	0	0	0	1	4574	1306	46	4		4	DISC1	1	231885724	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	25274382	231885724	17364897	7	5604										
CHRM3	0	genome.wustl.edu	37	chr1	240071786	240071786	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	aacaatgatgctgctgcctcCctggagaactccgcctcctc	8	16	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	240071786	240071786	C	A	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	silent	c.1035	p.S345	0.982	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	10	0	0	28	9	24.32	-	-	-	A	240071786	C	A	240071786	2	1	83	1	0	0	0	0	0	0	0	1	3407	610	22	4		4	CHRM3	1	240071786	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	8186062	240071786	9178835	8	5605										
OR2G2	0	genome.wustl.edu	37	chr1	247752384	247752384	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	accaggagacagaaagcattCgggacctgcttctcccacct	9	14	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	247752384	247752384	C	T	SNP	OR2G2	ENST00000320065	human	ensembl	69_37n	1	known	silent	c.723	p.F241	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489	69	0	0	158	20	11.24	-	-	-	T	247752384	C	T	247752384	2	4	83	1	0	0	0	0	0	0	0	1	11071	883	31	1		1	OR2G2	1	247752384	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	7680598	247752384	1498237	9	5606										
GLI2	0	genome.wustl.edu	37	chr2	121729565	121729565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gcagcaccgtcaaccctgtcGccattcacaagcgcagcaag	9	16	2	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	121729565	121729565	G	A	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.1108	p.A370T	0.303	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	18	0	0	35	17	32.08	-	-	-	A	121729565	G	A	121729565	3	1	83	1	0	0	0	0	1	0	0	0	6490	1087	38	1	1134	1	GLI2	2	121729565	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		121729565	121469808	10	5607										
TTN	0	genome.wustl.edu	37	chr2	179632645	179632645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acatatttctccttctgaatCtttattctatggatgaaatg	5	7	4	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	179632645	179632645	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.9312	p.K3104N	0.931	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0	74	22	22.92	-	-	-	G	179632645	C	G	179632645	3	3	83	1	0	0	0	0	1	0	0	0	16832	912	32	2	101968	2	TTN	2	179632645	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	57903080	179632645	63566728	11	5608										
NCKAP1	0	genome.wustl.edu	37	chr2	183847589	183847589	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	actcttctttggcatgttatCtgcatgacgaagtagccaga	9	9	3	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	183847589	183847589	C	A	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396Y	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	53	0	0	95	27	22.13	-	-	-	A	183847589	C	A	183847589	3	1	83	1	0	0	0	0	1	0	0	0	10293	913	32	2	2298	2	NCKAP1	2	183847589	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	4214944	183847589	59351784	12	5609										
SLC6A1	0	genome.wustl.edu	37	chr3	11064046	11064046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	aacatgcatcagatgacggaCgggctggataagccaggtca	13	9	2	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	11064046	11064046	C	T	SNP	SLC6A1	ENST00000287766	human	ensembl	69_37n	1	known	silent	c.606	p.D202	0.980	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	-	no_errors	SLC6A1	HGNC	ENSG00000157103	50	0	0	105	21	16.67	-	-	-	T	11064046	C	T	11064046	2	4	83	1	0	0	0	0	0	0	0	1	14762	535	19	1		1	SLC6A1	3	11064046	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		11064046	186958384	13	5610										
NR1D2	0	genome.wustl.edu	37	chr3	24003871	24003871	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgcggcaatgggcttagcagCcattttccctgtagtgagag	13	9	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	24003871	24003871	C	T	SNP	NR1D2	ENST00000312521	human	ensembl	69_37n	1	known	silent	c.921	p.S307	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738	47	0	0	70	25	26.04	-	-	-	T	24003871	C	T	24003871	2	4	83	1	0	0	0	0	0	0	0	1	10689	738	26	4		4	NR1D2	3	24003871	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	12939825	24003871	174018559	14	5611										
ADAMTS9	0	genome.wustl.edu	37	chr3	64518862	64518862	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cggcgacttcttgatgtcagAgacagcataattcccttgtg	10	10	2	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	64518862	64518862	A	G	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.5698	p.S1900P	1.000	pfam_Pept_M12B_GON-ADAMTSs,pfscan_Pept_M12B_GON-ADAMTSs	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	40	0	0	92	34	26.98	-	-	-	G	64518862	A	G	64518862	3	3	83	1	0	0	0	0	1	0	0	0	273	304	11	5	117	5	ADAMTS9	3	64518862	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	40514991	64518862	133503568	15	5612										
CCDC80	0	genome.wustl.edu	37	chr3	112326098	112326098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cttcagaatggttatgtggcGcagacctgagagaaaaaaga	12	6	1	5			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	112326098	112326098	G	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.2431	p.R811C	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	58	0	0	58	22	27.5	-	-	-	A	112326098	G	A	112326098	3	1	83	1	0	0	0	0	1	0	0	0	2881	1087	38	1	429	1	CCDC80	3	112326098	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	47807236	112326098	85696332	16	5613										
NIPAL1	0	genome.wustl.edu	37	chr4	48038079	48038079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	catccactgctaagaaagaaGccgtctctctgaatgtcaat	7	11	3	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	48038079	48038079	G	A	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	1	known	missense	c.1123	p.A375T	0.003	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	46	0	0	56	27	32.53	-	-	-	A	48038079	G	A	48038079	3	1	83	1	0	0	0	0	1	0	0	0	10496	971	34	4	1145	4	NIPAL1	4	48038079	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		48038079	143116197	17	5614										
AIMP1	0	genome.wustl.edu	37	chr4	107249280	107249280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ctccactgcacgctaattctAtggtttctgaaaatgtgata	7	9	2	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	107249280	107249280	A	G	SNP	AIMP1	ENST00000394701	human	ensembl	69_37n	1	known	missense	c.343	p.M115V	0.000	NULL	pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_t-SNARE,pfscan_tRNA-bd_dom	-	no_errors	AIMP1	HGNC	ENSG00000164022	69	0	0	108	49	31.21	-	-	-	G	107249280	A	G	107249280	3	3	83	1	0	0	0	0	1	0	0	0	433	449	16	5	357	5	AIMP1	4	107249280	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	59211201	107249280	83904996	18	5615										
KIAA1109	0	genome.wustl.edu	37	chr4	123111228	123111228	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acatctactactacatggatGagccaggtattgttgttgtt	9	7	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	123111228	123111228	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	nonsense	c.895	p.E299*	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	74	0	0	135	40	22.73	-	-	-	T	123111228	G	T	123111228	4	4	83	1	0	0	0	0	0	1	0	0	8260	1291	45	2	925	2	KIAA1109	4	123111228	Nonsense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	15861948	123111228	68043048	19	5616										
SLC45A2	0	genome.wustl.edu	37	chr5	33963829	33963829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tttttgttttttgctccctgCattgccagctctggatttac	7	10	1	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	5	33963829	33963829	C	T	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.855	p.M285I	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	75	0	0	198	53	21.12	-	-	-	T	33963829	C	T	33963829	3	4	83	1	0	0	0	0	1	0	0	0	14730	710	25	4	772	4	SLC45A2	5	33963829	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		33963829	146951431	20	5617										
AQPEP	0	genome.wustl.edu	37	chr5	115329524	115329524	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tattttgagtttgaagtaatTaactactttaatcctaaact	4	5	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	5	115329524	115329524	T	A	SNP	AQPEP	ENST00000357872	human	ensembl	69_37n	1	known	silent	c.1347	p.I449	0.051	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LVRN	Clone_based_vega_gene	ENSG00000172901	56	0	0	105	28	21.05	-	-	-	A	115329524	T	A	115329524	2	1	83	1	0	0	0	0	0	0	0	1	836	1742	61	5		5	AQPEP	5	115329524	Silent	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	81365695	115329524	65585736	21	5618										
TDRD6	0	genome.wustl.edu	37	chr6	46660616	46660616	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	atacagagaagatggacattAttatagggcacttatcacta	8	6	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	6	46660616	46660616	A	T	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.4751	p.Y1584F	0.997	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	97	0	0	163	37	18.5	-	-	-	T	46660616	A	T	46660616	3	4	83	1	0	0	0	0	1	0	0	0	15829	449	16	5	4753	5	TDRD6	6	46660616	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09		46660616	124454451	22	5619										
SEMA3D	0	genome.wustl.edu	37	chr7	84670042	84670042	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tttctttcatctcttgtgggGagtaaataaatatcttctat	6	6	5	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	84670042	84670042	G	A	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	silent	c.993	p.L331	0.959	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	66	0	0	67	12	15	-	-	-	A	84670042	G	A	84670042	2	1	83	1	0	0	0	0	0	0	0	1	14115	1161	41	2		2	SEMA3D	7	84670042	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		84670042	74468621	23	5620										
COL1A2	0	genome.wustl.edu	37	chr7	94034183	94034183	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gctcgtggtccagctggcccTcctggcaaggctggtgaaga	15	12	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	94034183	94034183	T	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	silent	c.411	p.P137	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	47	0	0	41	28	40.58	-	-	-	A	94034183	T	A	94034183	2	1	83	1	0	0	0	0	0	0	0	1	3708	1538	54	5		5	COL1A2	7	94034183	Silent	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	9364141	94034183	65104480	24	5621										
MUC17	0	genome.wustl.edu	37	chr7	100684336	100684336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gctgaaggtaccagcattccAacctcaactcctagtgaagg	9	12	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	100684336	100684336	A	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.9639	p.P3213	0.493	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	150	0	0	141	76	35.02	-	-	-	G	100684336	A	G	100684336	2	3	83	1	0	0	0	0	0	0	0	1	10046	117	5	5		5	MUC17	7	100684336	Silent	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	6650153	100684336	58454327	25	5622										
PREX2	0	genome.wustl.edu	37	chr8	69011939	69011939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tcttgaagccctggctaaaaGtgatgagcattttgtacaaa	9	7	1	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	69011939	69011939	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.2576	p.S859N	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	66	0	0	198	38	16.1	-	-	-	A	69011939	G	A	69011939	3	1	83	1	0	0	0	0	1	0	0	0	12558	1029	36	4	2666	4	PREX2	8	69011939	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		69011939	77352083	26	5623										
NUDCD1	0	genome.wustl.edu	37	chr8	110287602	110287602	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	agttcttcagaggtcaaatgCatcaaacgttcagctattgc	8	9	5	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	110287602	110287602	C	G	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	missense	c.1152	p.M384I	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	65	0	0	261	119	31.32	-	-	-	G	110287602	C	G	110287602	3	3	83	1	0	0	0	0	1	0	0	0	10795	710	25	4	615	4	NUDCD1	8	110287602	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	41275663	110287602	36076420	27	5624										
ZNF251	0	genome.wustl.edu	37	chr8	145947416	145947416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ccatggttaaaggctctgccGtgcttctctccagtgggaat	11	11	2	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	145947416	145947416	G	A	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	silent	c.1629	p.H543	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	32	0	0	106	17	13.82	-	-	-	A	145947416	G	A	145947416	2	1	83	1	0	0	0	0	0	0	0	1	17892	1136	40	1		1	ZNF251	8	145947416	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	35659814	145947416	416606	28	5625										
TLR4	0	genome.wustl.edu	37	chr9	120474689	120474689	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gtgaaatccagacaattgaaGatggggcatatcagagccta	11	7	1	5			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	9	120474689	120474689	G	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.283	p.D95Y	1.000	pirsf_Toll-like_receptor,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	29	0	0	32	7	17.95	-	-	-	T	120474689	G	T	120474689	3	4	83	1	0	0	0	0	1	0	0	0	16048	942	33	2	293	2	TLR4	9	120474689	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		120474689	20738742	29	5626										
CEL	0	genome.wustl.edu	37	chr9	135944524	135944524	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acgacctttgatgtctacacCgagtcctgggcccaggaccc	10	15	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	9	135944524	135944524	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	silent	c.1173	p.T391	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	12	0	0	21	9	30	-	-	-	T	135944524	C	T	135944524	2	4	83	1	0	0	0	0	0	0	0	1	3238	639	23	1		1	CEL	9	135944524	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	15469835	135944524	5268907	30	5627										
LDB3	0	genome.wustl.edu	37	chr10	88476372	88476372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgccccgggcaagagcaccaCctccatcagcaagcagaccc	9	18	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	10	88476372	88476372	C	T	SNP	LDB3	ENST00000429277	human	ensembl	69_37n	1	known	missense	c.1535	p.T512I	0.996	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367	17	0	0	59	15	19.74	-	-	-	T	88476372	C	T	88476372	3	4	83	1	0	0	0	0	1	0	0	0	8751	507	18	4	1890	4	LDB3	10	88476372	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		88476372	47058375	31	5628										
USH1C	0	genome.wustl.edu	37	chr11	17545007	17545007	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gaagtcgacgccattgacttCgacaatctggtcccctatct	8	13	2	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	17545007	17545007	C	A	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	nonsense	c.778	p.E260*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	48	0	0	192	34	15.04	-	-	-	A	17545007	C	A	17545007	4	1	83	1	0	0	0	0	0	1	0	0	17131	893	31	3	2071	3	USH1C	11	17545007	Nonsense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		17545007	117461509	32	5629										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57080520	57080520	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ctgggtgagggacatgcttgGatcatccccctgcacccagg	13	13	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	57080520	57080520	G	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.1642	p.P548A	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	12	0	0	17	5	22.73	-	-	-	C	57080520	G	C	57080520	3	2	83	1	0	0	0	0	1	0	0	0	16415	1174	41	2	3575	2	TNKS1BP1	11	57080520	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	39535513	57080520	77925996	33	5630										
SART1	0	genome.wustl.edu	37	chr11	65744012	65744012	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cccacctacgggctggctggCaatcgcgaggagcaggagga	16	12	0	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	65744012	65744012	C	T	SNP	SART1	ENST00000312397	human	ensembl	69_37n	1	known	silent	c.1719	p.G573	0.999	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	14	0	0	33	20	37.04	-	-	-	T	65744012	C	T	65744012	2	4	83	1	0	0	0	0	0	0	0	1	13933	697	25	4		4	SART1	11	65744012	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	8663492	65744012	69262504	34	5631										
KRT6B	0	genome.wustl.edu	37	chr12	52844400	52844400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgttctgctgctctaggaacCgcacctggaggggaagcaaa	13	10	2	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	12	52844400	52844400	C	T	SNP	KRT6B	ENST00000252252	human	ensembl	69_37n	-1	known	missense	c.545	p.R182Q	0.986	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479	68	0	0	160	64	28.57	-	-	-	T	52844400	C	T	52844400	3	4	83	1	0	0	0	0	1	0	0	0	8534	652	23	1	1181	1	KRT6B	12	52844400	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		52844400	81007495	35	5632										
TESC	0	genome.wustl.edu	37	chr12	117494644	117494644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	aggcacgaacaattttggatCggatggggttgagctccagg	15	7	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	12	117494644	117494644	C	T	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	missense	c.335	p.R112Q	0.999	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	69	0	0	173	29	14.36	-	-	-	T	117494644	C	T	117494644	3	4	83	1	0	0	0	0	1	0	0	0	15861	884	31	1	492	1	TESC	12	117494644	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	64650244	117494644	16357251	36	5633										
SLC39A2	0	genome.wustl.edu	37	chr14	21467657	21467660	+	Frame_Shift_Del	DEL	CTCA	CTCA	-													0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gcctgtttgccctgttggctCtcactctgggctgtggcctt							TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	CTCA	CTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	21467657	21467660	CTCA	-	DEL	SLC39A2	ENST00000298681	human	ensembl	69_37n	1	known	frame_shift_del	c.52_55	p.T19fs	0.113:0.990:0.996:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A2	HGNC	ENSG00000165794	76	0	0	183	46	19.91	-	-	-	-	21467660	CTCA	-	21467657	7	5	83	1	0	1	0	1	0	0	0	0	14707	913	32	0	54	0	SLC39A2	14	21467657	Frame_Shift_Del	DEL	CTCA	TCGA-A2-A1FW-01A-11D-A13L-09		21467657	85881883	37	5634										
HECTD1	0	genome.wustl.edu	37	chr14	31605749	31605749	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	aaactcaccattttcaaaagGtactgttccagagattcaac	5	10	3	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	31605749	31605749	G	C	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	nonsense	c.3102	p.Y1034*	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	75	0	0	155	40	20.51	-	-	-	C	31605749	G	C	31605749	4	2	83	1	0	0	0	0	0	1	0	0	7090	1256	44	4	4826	4	HECTD1	14	31605749	Nonsense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	10138092	31605749	75743791	38	5635										
SYNE2	0	genome.wustl.edu	37	chr14	64608223	64608223	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ataactcaacttccagatatTcaagaaaaacttcaccaggt	4	10	3	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	64608223	64608223	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.15141	p.I5047M	0.993	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	34	0	0	85	31	26.72	-	-	-	G	64608223	T	G	64608223	3	3	83	1	0	0	0	0	1	0	0	0	15538	1771	62	5	15459	5	SYNE2	14	64608223	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	33002474	64608223	42741317	39	5636										
FAM71D	0	genome.wustl.edu	37	chr14	67671595	67671595	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgtcagggacagcatagattTcccagaattcacagacatca	8	10	3	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	67671595	67671595	T	G	SNP	FAM71D	ENST00000311864	human	ensembl	69_37n	1	known	missense	c.701	p.F234C	1.000	NULL	pfam_DUF3699	-	no_errors	FAM71D	HGNC	ENSG00000172717	32	0	0	53	10	15.62	-	-	-	G	67671595	T	G	67671595	3	3	83	1	0	0	0	0	1	0	0	0	5655	1783	62	5	711	5	FAM71D	14	67671595	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	3063372	67671595	39677945	40	5637										
CHGA	0	genome.wustl.edu	37	chr14	93397599	93397599	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgtgctgtgtctgcagaggcGgtggaagagccatcatccaa	14	9	2	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	93397599	93397599	G	A	SNP	CHGA	ENST00000216492	human	ensembl	69_37n	1	known	silent	c.360	p.A120	0.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGA	HGNC	ENSG00000100604	19	0	0	31	11	26.19	-	-	-	A	93397599	G	A	93397599	2	1	83	1	0	0	0	0	0	0	0	1	3367	1103	39	1		1	CHGA	14	93397599	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	25726004	93397599	13951941	41	5638										
DUOX1	0	genome.wustl.edu	37	chr15	45448061	45448061	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tatgtctttgcctcccaccaCttccgccgccgcagtttccg	7	18	1	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	45448061	45448061	C	A	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3636	p.H1212Q	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	78	0	0	186	66	26.19	-	-	-	A	45448061	C	A	45448061	3	1	83	1	0	0	0	0	1	0	0	0	4835	564	20	4	3742	4	DUOX1	15	45448061	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		45448061	57083331	42	5639										
CEP152	0	genome.wustl.edu	37	chr15	49044602	49044602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gagcatggtgtccagcagcaGgtccagggtctccttggcca	14	12	1	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	49044602	49044602	G	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.3410	p.P1137H	0.006	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	30	0	0	46	41	46.59	-	-	-	T	49044602	G	T	49044602	3	4	83	1	0	0	0	0	1	0	0	0	3277	1000	35	4	1578	4	CEP152	15	49044602	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	3596541	49044602	53486790	43	5640										
MYO5A	0	genome.wustl.edu	37	chr15	52643662	52643662	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tcttcagttttttgttttctGattctagttcttgacgctgt	7	7	5	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	52643662	52643662	G	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	nonsense	c.3638	p.S1213*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	95	0	0	181	53	22.65	-	-	-	T	52643662	G	T	52643662	4	4	83	1	0	0	0	0	0	1	0	0	10150	1294	45	2	1985	2	MYO5A	15	52643662	Nonsense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	3599060	52643662	49887730	44	5641										
TBC1D21	0	genome.wustl.edu	37	chr15	74177166	74177166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acaaagatcccctgggcaacGtcctcatcgacaagaagagg	10	12	1	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	74177166	74177166	G	T	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	missense	c.412	p.V138F	0.458	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	21	0	0	54	22	28.57	-	-	-	T	74177166	G	T	74177166	3	4	83	1	0	0	0	0	1	0	0	0	15702	1145	40	3	430	3	TBC1D21	15	74177166	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	21533504	74177166	28354226	45	5642										
AMDHD2	0	genome.wustl.edu	37	chr16	2580551	2580551	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ctttctctccatttgagttcTggggtgggtggctcccttcc	11	12	2	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	16	2580551	2580551	T	A	SNP	AMDHD2	ENST00000413459	human	ensembl	69_37n	1	known	missense	c.1576	p.W526R	0.019	NULL	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	51	0	0	145	45	23.68	-	-	-	A	2580551	T	A	2580551	3	1	83	1	0	0	0	0	1	0	0	0	568	1580	55	5	1656	5	AMDHD2	16	2580551	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09		2580551	87774202	46	5643										
DPEP3	0	genome.wustl.edu	37	chr16	68011676	68011676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acccttcttatcaaggtgtcCgatgcataggacaaatctat	7	10	3	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	16	68011676	68011676	C	T	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	silent	c.888	p.S296	0.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	31	0	0	84	19	18.1	-	-	-	T	68011676	C	T	68011676	2	4	83	1	0	0	0	0	0	0	0	1	4750	639	23	1		1	DPEP3	16	68011676	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	65431125	68011676	22343077	47	5644										
OR1A1	0	genome.wustl.edu	37	chr17	3119269	3119269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gctatattttggctgcaatgGcatatgatcgagctgtggcc	12	8	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	3119269	3119269	G	A	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	missense	c.355	p.A119T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	93	0	0	95	43	31.16	-	-	-	A	3119269	G	A	3119269	3	1	83	1	0	0	0	0	1	0	0	0	11022	1203	42	4	357	4	OR1A1	17	3119269	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		3119269	78075941	48	5645										
CNTNAP1	0	genome.wustl.edu	37	chr17	40837254	40837254	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gaggccgacatactctatttCgacggcgacgatgccatctc	10	13	2	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	40837254	40837254	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	silent	c.531	p.F177	0.992	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	26	0	0	20	15	41.67	-	-	-	T	40837254	C	T	40837254	2	4	83	1	0	0	0	0	0	0	0	1	3676	883	31	1		1	CNTNAP1	17	40837254	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	37717985	40837254	40357956	49	5646										
MRC2	0	genome.wustl.edu	37	chr17	60768334	60768334	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cactctggtctggcaggacaAcacagctgtgaactactcca	9	13	2	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	60768334	60768334	A	G	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	missense	c.4037	p.N1346S	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	20	0	0	55	9	14.06	-	-	-	G	60768334	A	G	60768334	3	3	83	1	0	0	0	0	1	0	0	0	9830	43	2	5	4147	5	MRC2	17	60768334	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	19931080	60768334	20426876	50	5647										
SCN4A	0	genome.wustl.edu	37	chr17	62049998	62049998	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	acctccggcggggggtctccGtagatcatgggtaggttctt	15	10	3	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	62049998	62049998	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.204	p.Y68	0.430	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	42	0	0	204	50	19.69	-	-	-	A	62049998	G	A	62049998	2	1	83	1	0	0	0	0	0	0	0	1	14008	1140	40	1		1	SCN4A	17	62049998	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	1281664	62049998	19145212	51	5648										
ODF3L2	0	genome.wustl.edu	37	chr19	463919	463919	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gccatggtgctggcccgtttCgagtggcggatgcccataga	15	11	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	463919	463919	C	T	SNP	ODF3L2	ENST00000315489	human	ensembl	69_37n	-1	known	silent	c.795	p.S265	0.002	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	22	0	0	15	17	53.12	-	-	-	T	463919	C	T	463919	2	4	83	1	0	0	0	0	0	0	0	1	10905	871	31	1		1	ODF3L2	19	463919	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		463919	58665064	52	5649										
RFX1	0	genome.wustl.edu	37	chr19	14076542	14076542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gcacgggctcgaacttggagAggagcaccaggatggctttg	16	9	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	14076542	14076542	A	C	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	missense	c.2009	p.L670R	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	29	0	0	57	23	28.75	-	-	-	C	14076542	A	C	14076542	3	2	83	1	0	0	0	0	1	0	0	0	13345	304	11	5	958	5	RFX1	19	14076542	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	13612623	14076542	45052441	53	5650										
JAK3	0	genome.wustl.edu	37	chr19	17937697	17937697	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	cctgtgggctaggggcccagCacagcttcatgagctcgtga	14	12	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	17937697	17937697	C	A	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.3230	p.C1077F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	22	0	0	32	8	20	-	-	-	A	17937697	C	A	17937697	3	1	83	1	0	0	0	0	1	0	0	0	7993	710	25	4	148	4	JAK3	19	17937697	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	3861155	17937697	41191286	54	5651										
ZNF507	0	genome.wustl.edu	37	chr19	32845865	32845865	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	agaatccttccattataaggTaagcattggttcaggaagtc	9	7	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	32845865	32845865	T	C	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	1	known	splice_site	c.2127+2	e1+2	1.000	-	-	-	no_errors	ZNF507	HGNC	ENSG00000168813	31	0	0	42	22	34.38	-	-	-	C	32845865	T	C	32845865	5	2	83	1	0	0	0	0	0	0	1	0	18049	1652	57	5	2131	5	ZNF507	19	32845865	Splice_Site	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	14908168	32845865	26283118	55	5652										
MEGF8	0	genome.wustl.edu	37	chr19	42855839	42855839	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tgccggagctgcgatggcttCctgacctgccatgagtgtct	13	12	1	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	42855839	42855839	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	silent	c.3027	p.F1009	0.993	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	15	0	0	23	21	47.73	-	-	-	T	42855839	C	T	42855839	2	4	83	1	0	0	0	0	0	0	0	1	9534	854	30	2		2	MEGF8	19	42855839	Silent	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09	10009974	42855839	16273144	56	5653										
SIGLEC1	0	genome.wustl.edu	37	chr20	3687268	3687268	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ggcacctccacgtcggcaggGaagctgaagatgcaggggat	16	10	0	2			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	3687268	3687268	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.135	p.F45	0.987	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	11	0	0	41	10	19.23	-	-	-	A	3687268	G	A	3687268	2	1	83	1	0	0	0	0	0	0	0	1	14394	1165	41	2		2	SIGLEC1	20	3687268	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		3687268	59338252	57	5654										
PAK7	0	genome.wustl.edu	37	chr20	9561437	9561437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tcttccgcgtggcctggaccGtggctggaggctccctgatc	14	14	1	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	9561437	9561437	G	A	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	silent	c.345	p.H115	0.016	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	59	0	0	101	33	24.63	-	-	-	A	9561437	G	A	9561437	2	1	83	1	0	0	0	0	0	0	0	1	11478	1136	40	1		1	PAK7	20	9561437	Silent	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	5874169	9561437	53464083	58	5655										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31975264	31975264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gccggggaaggtcccggtagGcatcaggaccagccaaaata	14	11	1	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	31975264	31975264	G	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.620	p.A207V	1.000	tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	16	0	0	40	11	21.57	-	-	-	A	31975264	G	A	31975264	3	1	83	1	0	0	0	0	1	0	0	0	3174	1203	42	4	1179	4	CDK5RAP1	20	31975264	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09	22413827	31975264	31050256	59	5656										
KRTAP6-3	0	genome.wustl.edu	37	chr21	31965011	31965011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	tggactgtggctatggctgtGgctatggctatgtctcccac	13	10	1	0			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	21	31965011	31965011	G	A	SNP	KRTAP6-3	ENST00000391624	human	ensembl	69_37n	1	known	missense	c.226	p.G76S	1.000	NULL	NULL	-	no_errors	KRTAP6-3	HGNC	ENSG00000212938	155	0	0	185	65	25.9	-	-	-	A	31965011	G	A	31965011	3	1	83	1	0	0	0	0	1	0	0	0	8625	1348	47	4	249	4	KRTAP6-3	21	31965011	Missense_Mutation	SNP	G	TCGA-A2-A1FW-01A-11D-A13L-09		31965011	16164884	60	5657										
PIGA	0	genome.wustl.edu	37	chrX	15349901	15349901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	gagagagctggtaaatgtggCtttccacgcctcccatattt	10	10	0	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	15349901	15349901	C	T	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.152	p.S51N	1.000	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	46	0	0	88	60	40.54	-	-	-	T	15349901	C	T	15349901	3	4	83	1	0	0	0	0	1	0	0	0	11958	797	28	4	1322	4	PIGA	23	15349901	Missense_Mutation	SNP	C	TCGA-A2-A1FW-01A-11D-A13L-09		15349901	139920659	61	5658										
HUWE1	0	genome.wustl.edu	37	chrX	53652126	53652126	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	ggaatcaaataccatgtcgtAtgccatctgagaaagcaggg	11	8	2	1			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	53652126	53652126	A	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.1583	p.I528T	1.000	pfam_E3_Ub_ligase_DUF913,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	62	0	0	149	31	17.22	-	-	-	G	53652126	A	G	53652126	3	3	83	1	0	0	0	0	1	0	0	0	7515	449	16	5	11809	5	HUWE1	23	53652126	Missense_Mutation	SNP	A	TCGA-A2-A1FW-01A-11D-A13L-09	38302225	53652126	101618434	62	5659										
WBP5	0	genome.wustl.edu	37	chrX	102612872	102612872	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	aaggagagtcagaaacaaacTtatagtgatgcgttggaagg	13	4	1	3			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	102612872	102612872	T	G	SNP	WBP5	ENST00000372656	human	ensembl	69_37n	1	known	missense	c.260	p.L87R	0.996	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	WBP5	HGNC	ENSG00000185222	51	0	0	103	27	20.77	-	-	-	G	102612872	T	G	102612872	3	3	83	1	0	0	0	0	1	0	0	0	17359	1609	56	5	262	5	WBP5	23	102612872	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	48960746	102612872	52657688	63	5660										
TBC1D8B	0	genome.wustl.edu	37	chrX	106096864	106096864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015625	1	1	0.190954043048284	1.71858638743456	0	1	1	0	agtggatattacagatttgaTtagagaatcaaatgaggtaa	10	2	1	4			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	106096864	106096864	T	C	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.2237	p.I746T	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	61	0	0	108	23	17.56	-	-	-	C	106096864	T	C	106096864	3	2	83	1	0	0	0	0	1	0	0	0	15721	1493	52	5	2353	5	TBC1D8B	23	106096864	Missense_Mutation	SNP	T	TCGA-A2-A1FW-01A-11D-A13L-09	3483992	106096864	49173696	64	5661										
PIK3C2B	0	genome.wustl.edu	37	chr1	204438798	204438798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	ctgcttggctctgttctcctCcttgtcatgccggagccggg	12	14	3	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	204438798	204438798	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	50	0	0	10	19	65.52	-	-	-	T	204438798	C	T	204438798	3	4	84	1	0	0	0	0	1	0	0	0	11984	864	30	2	4899	2	PIK3C2B	1	204438798	Missense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		204438798	44811823	1	5662										
PLD5	0	genome.wustl.edu	37	chr1	242451687	242451687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	acatgctgatggatgagtgtGgttgagatcccaatgggaag	15	5	0	3			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	242451687	242451687	G	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.472	p.H158N	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	84	0	0	18	24	57.14	-	-	-	T	242451687	G	T	242451687	3	4	84	1	0	0	0	0	1	0	0	0	12123	1348	47	4	1170	4	PLD5	1	242451687	Missense_Mutation	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09	38012889	242451687	6798934	2	5663										
ACVR2B	0	genome.wustl.edu	37	chr3	38519699	38519699	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	gcctactcactgctgcccatCgggggcctttccctcatcgt	9	17	2	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	38519699	38519699	C	T	SNP	ACVR2B	ENST00000352511	human	ensembl	69_37n	1	known	silent	c.438	p.I146	0.363	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2B	HGNC	ENSG00000114739	25	0	0	33	14	29.17	-	-	-	T	38519699	C	T	38519699	2	4	84	1	0	0	0	0	0	0	0	1	224	874	31	1		1	ACVR2B	3	38519699	Silent	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		38519699	159502731	3	5664										
ZBTB38	0	genome.wustl.edu	37	chr3	141164333	141164333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	acatgagatgtcacaccgggGagaagccataccagtgcaag	12	10	1	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	141164333	141164333	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	missense	c.3106	p.E1036K	0.998	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	27	0	0	27	17	38.64	-	-	-	A	141164333	G	A	141164333	3	1	84	1	0	0	0	0	1	0	0	0	17635	1175	41	2	3105	2	ZBTB38	3	141164333	Missense_Mutation	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09	102644634	141164333	56858097	4	5665										
PLCH1	0	genome.wustl.edu	37	chr3	155232586	155232586	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tgtgaaactatcaggatcttCtttatctcgaatttgagatt	7	6	4	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	155232586	155232586	C	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	nonsense	c.1522	p.E508*	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	76	0	0	17	5	22.73	-	-	-	A	155232586	C	A	155232586	4	1	84	1	0	0	0	0	0	1	0	0	12111	922	32	2	3626	2	PLCH1	3	155232586	Nonsense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09	14068253	155232586	42789844	5	5666										
GYPA	0	genome.wustl.edu	37	chr4	145035868	145035868	+	Frame_Shift_Del	DEL	A	A	-													0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tttctatttcaacagaacttAaaggcacgtctgtgtcaggt							TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	4	145035868	145035868	A	-	DEL	GYPA	ENST00000360771	human	ensembl	69_37n	-1	known	frame_shift_del	c.410	p.L137fs	0.001	pfam_Glycophorin,pirsf_Glycophorin	pfam_Glycophorin,pirsf_Glycophorin	-	no_errors	GYPA	HGNC	ENSG00000170180	74	0	0	8	2	20	-	-	-	-	145035868	A	-	145035868	7	5	84	1	0	1	0	1	0	0	0	0	6959	372	13	0	50	0	GYPA	4	145035868	Frame_Shift_Del	DEL	A	TCGA-A2-A1FX-01A-11D-A13L-09		145035868	46118408	6	5667										
CTNNA1	0	genome.wustl.edu	37	chr5	138264934	138264934	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tgatctttgtctgggtggcaGacccctgaggagttggatga	15	7	2	4			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	5	138264934	138264934	G	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	splice_site	c.1900-1	e13-1	1.000	-	-	-	no_errors	CTNNA1	HGNC	ENSG00000044115	39	0	0	46	15	24.59	-	-	-	T	138264934	G	T	138264934	5	4	84	1	0	0	0	0	0	0	1	0	4044	956	33	2	1949	2	CTNNA1	5	138264934	Splice_Site	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09		138264934	42650326	7	5668										
ATXN1	0	genome.wustl.edu	37	chr6	16306707	16306707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	cacctcctcttcctcgttgcCgcgggcttgctgggttctat	10	15	2	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	16306707	16306707	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	silent	c.2301	p.A767	0.012	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	78	0	0	96	12	11.11	-	-	-	T	16306707	C	T	16306707	2	4	84	1	0	0	0	0	0	0	0	1	1213	639	23	1		1	ATXN1	6	16306707	Silent	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		16306707	154808360	8	5669										
ITPR3	0	genome.wustl.edu	37	chr6	33631568	33631568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	ggggagaagatcaagtactgCctggtggctgtgcctcatgg	16	8	2	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	33631568	33631568	C	G	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.1059	p.C353W	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	30	0	0	77	21	21.21	-	-	-	G	33631568	C	G	33631568	3	3	84	1	0	0	0	0	1	0	0	0	7976	747	26	4	1101	4	ITPR3	6	33631568	Missense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09	17324861	33631568	137483499	9	5670										
TRRAP	0	genome.wustl.edu	37	chr7	98527687	98527687	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tcacagtgaagaaaatggctCgaaaggaatggatcctttgg	12	6	1	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	7	98527687	98527687	C	T	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	nonsense	c.2395	p.R799*	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	62	0	0	20	12	37.5	-	-	-	T	98527687	C	T	98527687	4	4	84	1	0	0	0	0	0	1	0	0	16697	893	31	1	3341	1	TRRAP	7	98527687	Nonsense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		98527687	60610976	10	5671										
ATXN3	0	genome.wustl.edu	37	chr14	92562444	92562444	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tgtgactacttacctgaataGagaaaaaaccactgtcatcc	6	10	1	3			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	14	92562444	92562444	G	A	SNP	ATXN3	ENST00000545170	human	ensembl	69_37n	-1	known	missense	c.227	p.S76F	1.000	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427	60	0	0	17	4	19.05	-	-	-	A	92562444	G	A	92562444	3	1	84	1	0	0	0	0	1	0	0	0	1217	942	33	2	894	2	ATXN3	14	92562444	Missense_Mutation	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09		92562444	14787096	11	5672										
RGMA	0	genome.wustl.edu	37	chr15	93588269	93588269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	ggccaggagcgggacgagggCgcccaggaggggccgggggg	25	10	0	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	15	93588269	93588269	C	T	SNP	RGMA	ENST00000329082	human	ensembl	69_37n	-1	known	missense	c.1312	p.A438T	0.000	NULL	pfam_RGM_N,pfam_RGM_C	-	no_errors	RGMA	HGNC	ENSG00000182175	8	0	0	12	6	31.58	-	-	-	T	93588269	C	T	93588269	3	4	84	1	0	0	0	0	1	0	0	0	13363	768	27	1	44	1	RGMA	15	93588269	Missense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		93588269	8943123	12	5673										
ZNF629	0	genome.wustl.edu	37	chr16	30793176	30793176	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	ttgcccttccccatggctgcTgctctctgtgggggtagggg	15	12	1	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	16	30793176	30793176	T	C	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	missense	c.2473	p.S825G	0.855	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	36	0	0	44	10	18.52	-	-	-	C	30793176	T	C	30793176	3	2	84	1	0	0	0	0	1	0	0	0	18149	1580	55	5	140	5	ZNF629	16	30793176	Missense_Mutation	SNP	T	TCGA-A2-A1FX-01A-11D-A13L-09		30793176	59561577	13	5674										
UNC13D	0	genome.wustl.edu	37	chr17	73836636	73836636	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	aagtcgtcctggcctttgtcCttccgggcctctttaaagat	9	12	1	1			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	17	73836636	73836636	C	T	SNP	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	silent	c.705	p.K235	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	UNC13D	HGNC	ENSG00000092929	64	0	0	23	12	34.29	-	-	-	T	73836636	C	T	73836636	2	4	84	1	0	0	0	0	0	0	0	1	17084	680	24	4		4	UNC13D	17	73836636	Silent	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		73836636	7358574	14	5675										
STXBP2	0	genome.wustl.edu	37	chr19	7712614	7712614	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	cctctgcccctgcacaggctCctcacacatcctcaccccga	5	22	3	0			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	19	7712614	7712614	C	G	SNP	STXBP2	ENST00000441779	human	ensembl	69_37n	1	known	missense	c.1733	p.S578C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	58	0	0	39	16	28.57	-	-	-	G	7712614	C	G	7712614	3	3	84	1	0	0	0	0	1	0	0	0	15444	855	30	2	1774	2	STXBP2	19	7712614	Missense_Mutation	SNP	C	TCGA-A2-A1FX-01A-11D-A13L-09		7712614	51416369	15	5676										
KRTAP19-2	0	genome.wustl.edu	37	chr21	31859634	31859634	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	gccatagcccagtctgcagaAgctgccacatccacagccgt	9	16	1	1			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	31859634	31859634	A	T	SNP	KRTAP19-2	ENST00000334055	human	ensembl	69_37n	-1	known	missense	c.34	p.F12I	0.013	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-2	HGNC	ENSG00000186965	63	0	0	29	19	38.78	-	-	-	T	31859634	A	T	31859634	3	4	84	1	0	0	0	0	1	0	0	0	8582	72	3	5	126	5	KRTAP19-2	21	31859634	Missense_Mutation	SNP	A	TCGA-A2-A1FX-01A-11D-A13L-09		31859634	16270261	16	5677										
ERG	0	genome.wustl.edu	37	chr21	39755519	39755519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	gtgataggagcccatgtacgGgaggtctgaggggtacttgt	17	6	1	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	39755519	39755519	G	T	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	missense	c.1267	p.P423T	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	53	0	0	35	6	14.63	-	-	-	T	39755519	G	T	39755519	3	4	84	1	0	0	0	0	1	0	0	0	5259	1232	43	4	197	4	ERG	21	39755519	Missense_Mutation	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09	7895885	39755519	8374376	17	5678										
KRTAP10-7	0	genome.wustl.edu	37	chr21	46020889	46020889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	gcccgtctgctgcaagactgTctgctgcaagcctgtgtact	11	13	2	1			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	46020889	46020889	T	A	SNP	KRTAP10-7	ENST00000380102	human	ensembl	69_37n	1	known	missense	c.368	p.V123D	0.009	NULL	NULL	-	no_errors	KRTAP10-7	HGNC	ENSG00000205441	43	0	0	33	16	32.65	-	-	-	A	46020889	T	A	46020889	3	1	84	1	0	0	0	0	1	0	0	0	8567	1667	58	5	359	5	KRTAP10-7	21	46020889	Missense_Mutation	SNP	T	TCGA-A2-A1FX-01A-11D-A13L-09	6265370	46020889	2109006	18	5679										
NRK	0	genome.wustl.edu	37	chrX	105132399	105132399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	gctgagtccccctggtcagcGgcaccaactttgggtatgtt	12	12	1	1			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	105132399	105132399	G	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.365	p.R122Q	0.954	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	134	1	0.74	40	7	14.89	-	-	-	A	105132399	G	A	105132399	3	1	84	1	0	0	0	0	1	0	0	0	10728	1116	39	1	383	1	NRK	23	105132399	Missense_Mutation	SNP	G	TCGA-A2-A1FX-01A-11D-A13L-09		105132399	50138161	19	5680										
SMARCA1	0	genome.wustl.edu	37	chrX	128631871	128631871	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.98427669967513	0.732323232323232	0	0.895061728395062	1	1	0	tccagaactaccattttaccActgttgctgacaatatgctc	5	12	0	2			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	128631871	128631871	A	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.1455	p.S485R	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	82	0	0	19	10	34.48	-	-	-	T	128631871	A	T	128631871	3	4	84	1	0	0	0	0	1	0	0	0	14857	156	6	5	1765	5	SMARCA1	23	128631871	Missense_Mutation	SNP	A	TCGA-A2-A1FX-01A-11D-A13L-09	23499472	128631871	26638689	20	5681										
OSBPL9	0	genome.wustl.edu	37	chr1	52227617	52227617	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gttggctaccttgggacatcAtcagactcctacaccaaata	7	12	2	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	1	52227617	52227617	A	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	1	known	missense	c.806	p.H269L	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	82	0	0	30	5	14.29	-	-	-	T	52227617	A	T	52227617	3	4	85	1	0	0	0	0	1	0	0	0	11357	217	8	5	898	5	OSBPL9	1	52227617	Missense_Mutation	SNP	A	TCGA-A2-A1FZ-01A-51D-A17G-09		52227617	197023004	1	5682										
LYSMD1	0	genome.wustl.edu	37	chr1	151137721	151137721	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cccctggcgggggctgtctaGacggggaagccatctcttca	14	13	3	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	1	151137721	151137721	G	A	SNP	LYSMD1	ENST00000368908	human	ensembl	69_37n	-1	known	missense	c.14	p.S5F	0.995	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD1	HGNC	ENSG00000163155	17	0	0	11	4	26.67	-	-	-	A	151137721	G	A	151137721	3	1	85	1	0	0	0	0	1	0	0	0	9191	942	33	2	681	2	LYSMD1	1	151137721	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09	98910104	151137721	98112900	2	5683										
SCN9A	0	genome.wustl.edu	37	chr2	167141168	167141171	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gctcctggggtctgtggggcAcaaacagtgagccccttctg							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	2	167141168	167141171	ACAA	-	DEL	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	frame_shift_del	c.1772_1769	p.F590fs	1.000:0.499:0.383:1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	47	0	0	40	8	16	-	-	-	-	167141171	ACAA	-	167141168	7	5	85	1	0	1	0	1	0	0	0	0	14013	159	6	0	4228	0	SCN9A	2	167141168	Frame_Shift_Del	DEL	ACAA	TCGA-A2-A1FZ-01A-51D-A17G-09		167141168	76058205	3	5684										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0	28	21	42.86	-	-	-	G	178952085	A	G	178952085	3	3	85	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A1FZ-01A-51D-A17G-09		178952085	19070345	4	5685										
SEC24A	0	genome.wustl.edu	37	chr5	133996823	133996823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	tggaaggtcctgtccaaaatGcattgctgtcttcacaagag	10	9	2	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	5	133996823	133996823	G	A	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.112	p.A38T	0.648	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	40	0	0	18	5	21.74	-	-	-	A	133996823	G	A	133996823	3	1	85	1	0	0	0	0	1	0	0	0	14082	1319	46	4	118	4	SEC24A	5	133996823	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		133996823	46918437	5	5686										
MYB	0	genome.wustl.edu	37	chr6	135511266	135511266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	tttgtgtgtttatctgaaggTgatagagcttgtacagaaat	11	3	1	4			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	6	135511266	135511266	T	C	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	missense	c.308	p.V103A	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	77	0	0	28	5	15.15	-	-	-	C	135511266	T	C	135511266	3	2	85	1	0	0	0	0	1	0	0	0	10079	1710	59	5	326	5	MYB	6	135511266	Missense_Mutation	SNP	T	TCGA-A2-A1FZ-01A-51D-A17G-09		135511266	35603801	6	5687										
DUS4L	0	genome.wustl.edu	37	chr7	107215657	107215657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gcaatggcagaaggttatggGgcttgcttaataaacaagcc	12	7	0	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	7	107215657	107215657	G	T	SNP	DUS4L	ENST00000422290	human	ensembl	69_37n	1	known	missense	c.263	p.G88V	0.999	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS4L	HGNC	ENSG00000105865	55	0	0	28	4	12.5	-	-	-	T	107215657	G	T	107215657	3	4	85	1	0	0	0	0	1	0	0	0	4843	1219	43	4	395	4	DUS4L	7	107215657	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		107215657	51923006	7	5688										
LUC7L2	0	genome.wustl.edu	37	chr7	139083442	139083445	+	Frame_Shift_Del	DEL	ATGT	ATGT	-													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	agattttttctttgaacttgAtgtatgtgattttgctttaa							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	ATGT	ATGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	7	139083442	139083445	ATGT	-	DEL	LUC7L2	ENST00000541515	human	ensembl	69_37n	1	known	frame_shift_del	c.452_453	p.D151fs	1.000:1.000	pfam_LUC7-rel	pfam_LUC7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000146963	107	0	0	62	9	12.68	-	-	-	-	139083445	ATGT	-	139083442	7	5	85	1	0	1	0	1	0	0	0	0	9149	347	12	0	264	0	LUC7L2	7	139083442	Frame_Shift_Del	DEL	ATGT	TCGA-A2-A1FZ-01A-51D-A17G-09	31867785	139083442	20055221	8	5689										
MATN2	0	genome.wustl.edu	37	chr8	99039661	99039661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	tagaatgcactgaaggcccaAttgacctggtctttgtgatc	10	9	1	4			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	8	99039661	99039661	A	C	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.1960	p.I654L	0.004	smart_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	31	0	0	11	6	35.29	-	-	-	C	99039661	A	C	99039661	3	2	85	1	0	0	0	0	1	0	0	0	9405	101	4	5	2010	5	MATN2	8	99039661	Missense_Mutation	SNP	A	TCGA-A2-A1FZ-01A-51D-A17G-09		99039661	47324361	9	5690										
EHMT1	0	genome.wustl.edu	37	chr9	140710464	140710464	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	atcttcgaatgcaaccacgcGtgctcctgctggaggaactg	11	12	1	0			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	9	140710464	140710464	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.3324	p.A1108	0.912	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	31	0	0	17	5	22.73	-	-	-	A	140710464	G	A	140710464	2	1	85	1	0	0	0	0	0	0	0	1	5018	1132	40	1		1	EHMT1	9	140710464	Silent	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		140710464	502967	10	5691										
RHOBTB1	0	genome.wustl.edu	37	chr10	62671216	62671216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cgccctggcacagatcaagcGcgtcttccccacggcattgt	10	16	2	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	10	62671216	62671216	G	A	SNP	RHOBTB1	ENST00000337910	human	ensembl	69_37n	-1	known	missense	c.85	p.R29C	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB1	HGNC	ENSG00000072422	65	0	0	34	15	30.61	-	-	-	A	62671216	G	A	62671216	3	1	85	1	0	0	0	0	1	0	0	0	13417	1087	38	1	2041	1	RHOBTB1	10	62671216	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		62671216	72863531	11	5692										
FOLR1	0	genome.wustl.edu	37	chr11	71906691	71906691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cgcaaagagcgggtactgaaCgtgcccctgtgcaaagagga	14	10	0	3			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	11	71906691	71906691	C	T	SNP	FOLR1	ENST00000312293	human	ensembl	69_37n	1	known	silent	c.393	p.N131	0.328	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR1	HGNC	ENSG00000110195	43	0	0	26	10	27.78	-	-	-	T	71906691	C	T	71906691	2	4	85	1	0	0	0	0	0	0	0	1	6027	535	19	1		1	FOLR1	11	71906691	Silent	SNP	C	TCGA-A2-A1FZ-01A-51D-A17G-09		71906691	63099825	12	5693										
FLI1	0	genome.wustl.edu	37	chr11	128628222	128628222	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gaccacatgaatggatccagGtaagctcaccaggcctgtgc	11	12	1	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	11	128628222	128628222	G	A	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	splice_site	c.230+1	e2+1	1.000	-	-	-	no_errors	FLI1	HGNC	ENSG00000151702	48	0	0	25	7	21.88	-	-	-	A	128628222	G	A	128628222	5	1	85	1	0	0	0	0	0	0	1	0	5970	1275	44	4	237	4	FLI1	11	128628222	Splice_Site	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09	56721531	128628222	6378294	13	5694										
NUP107	0	genome.wustl.edu	37	chr12	69135710	69135710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gtactggtcagtatcaggaaTgcctacagttagcagatatg	11	7	2	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	12	69135710	69135710	T	C	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.2620	p.C874R	0.997	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	107	0	0	33	12	26.67	-	-	-	C	69135710	T	C	69135710	3	2	85	1	0	0	0	0	1	0	0	0	10826	1464	51	5	2726	5	NUP107	12	69135710	Missense_Mutation	SNP	T	TCGA-A2-A1FZ-01A-51D-A17G-09		69135710	64716185	14	5695										
FOXA1	0	genome.wustl.edu	37	chr14	38060747	38060748	+	Frame_Shift_Ins	INS	-	-	T													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cgtatgccttgaagtccagcINSttatgctgctgctccgagga							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	14	38060747	38060748	-	T	INS	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1242_1241	p.L415fs	1.000:1.000	pfam_Forkhead_box_C	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	55	0	0	31	6	16.22	-	-	-	T	38060748	-	T	38060747	7	5	85	1	0	1	1	0	0	0	0	0	6035	796	28	0	180	0	FOXA1	14	38060747	Frame_Shift_Ins	INS	-	TCGA-A2-A1FZ-01A-51D-A17G-09		38060747	69288793	15	5696										
FAM179B	0	genome.wustl.edu	37	chr14	45465069	45465069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	acttatttcagaatagtcggGattttaacccagattgtctt	7	7	2	2			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	14	45465069	45465069	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.2167	p.D723Y	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	95	0	0	49	10	16.95	-	-	-	T	45465069	G	T	45465069	3	4	85	1	0	0	0	0	1	0	0	0	5546	1174	41	2	2173	2	FAM179B	14	45465069	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09	7404322	45465069	61884471	16	5697										
ULK3	0	genome.wustl.edu	37	chr15	75131031	75131031	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cctgcctcagcagggcctgaTtggaagaggagacgatggcc	15	11	1	3			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	15	75131031	75131031	T	C	SNP	ULK3	ENST00000440863	human	ensembl	69_37n	-1	known	missense	c.1055	p.N352S	1.000	smart_MIT	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIT,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_MIT,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK3	HGNC	ENSG00000140474	19	0	0	14	6	30	-	-	-	C	75131031	T	C	75131031	3	2	85	1	0	0	0	0	1	0	0	0	17074	1493	52	5	391	5	ULK3	15	75131031	Missense_Mutation	SNP	T	TCGA-A2-A1FZ-01A-51D-A17G-09		75131031	27400361	17	5698										
ADAMTS7	0	genome.wustl.edu	37	chr15	79058298	79058298	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	ccatgagcctggtcctggggTtgggaaggagggagtccccg	18	10	0	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	15	79058298	79058298	T	C	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	missense	c.3955	p.T1319A	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	8	0	0	3	3	50	-	-	-	C	79058298	T	C	79058298	3	2	85	1	0	0	0	0	1	0	0	0	271	1725	60	5	1129	5	ADAMTS7	15	79058298	Missense_Mutation	SNP	T	TCGA-A2-A1FZ-01A-51D-A17G-09	3927267	79058298	23473094	18	5699										
CHTF18	0	genome.wustl.edu	37	chr16	845185	845186	+	Frame_Shift_Del	DEL	TG	TG	-													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cgagactccagcctgggtgcTgtgtgtgtggccctcgactg							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	16	845185	845186	TG	-	DEL	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	frame_shift_del	c.2631_2632	p.V880fs	0.001:0.996	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	27	0	0	15	2	11.76	-	-	-	-	845186	TG	-	845185	7	5	85	1	0	1	0	1	0	0	0	0	3443	1567	55	0	2066	0	CHTF18	16	845185	Frame_Shift_Del	DEL	TG	TCGA-A2-A1FZ-01A-51D-A17G-09		845185	89509568	19	5700										
PLD6	0	genome.wustl.edu	37	chr17	17106185	17106185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gcttccgtgacttttctttgGtgggaaaaaggtatactttg	11	6	1	1			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	17	17106185	17106185	G	A	SNP	PLD6	ENST00000321560	human	ensembl	69_37n	-1	known	missense	c.655	p.P219S	0.054	NULL	smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD6	HGNC	ENSG00000179598	42	0	0	43	10	18.87	-	-	-	A	17106185	G	A	17106185	3	1	85	1	0	0	0	0	1	0	0	0	12124	1261	44	4	107	4	PLD6	17	17106185	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		17106185	64089025	20	5701										
ANKRD12	0	genome.wustl.edu	37	chr18	9255050	9255051	+	Frame_Shift_Del	DEL	AA	AA	-													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	gaattcttgccagaaagttcAagtgtaaaatcttgtaagca							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	18	9255050	9255051	AA	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.1785_1786	p.S596fs	0.892:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	18	0	0	10	4	28.57	-	-	-	-	9255051	AA	-	9255050	7	5	85	1	0	1	0	1	0	0	0	0	640	117	5	0	1815	0	ANKRD12	18	9255050	Frame_Shift_Del	DEL	AA	TCGA-A2-A1FZ-01A-51D-A17G-09		9255050	68822198	21	5702										
FBXO15	0	genome.wustl.edu	37	chr18	71797870	71797870	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	ttgcaggtgaaaaagcagttGagtagattccgatccaaata	10	6	0	3			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	18	71797870	71797870	G	C	SNP	FBXO15	ENST00000419743	human	ensembl	69_37n	-1	known	nonsense	c.356	p.S119*	0.955	superfamily_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO15	HGNC	ENSG00000141665	60	0	0	31	11	26.19	-	-	-	C	71797870	G	C	71797870	4	2	85	1	0	0	0	0	0	1	0	0	5774	1294	45	2	1204	2	FBXO15	18	71797870	Nonsense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09	62542820	71797870	6279378	22	5703										
KRI1	0	genome.wustl.edu	37	chr19	10676488	10676488	+	Frame_Shift_Del	DEL	C	C	-													0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	tgcgggacacagacgggatgCccccccccaggtcagccggc							TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	19	10676488	10676488	C	-	DEL	KRI1	ENST00000361821	human	ensembl	69_37n	-1	putative	frame_shift_del	c.79	p.A27fs	0.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	10	0	0	4	2	33.33	-	-	-	-	10676488	C	-	10676488	7	5	85	1	0	1	0	1	0	0	0	0	8497	754	26	0		0	KRI1	19	10676488	Frame_Shift_Del	DEL	C	TCGA-A2-A1FZ-01A-51D-A17G-09		10676488	48452495	23	5704										
TTYH1	0	genome.wustl.edu	37	chr19	54941109	54941109	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	cccttatgttctgaacctgaCccaggaggagacagggctca	11	12	2	3			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	19	54941109	54941109	C	G	SNP	TTYH1	ENST00000376531	human	ensembl	69_37n	1	known	missense	c.857	p.T286S	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614	48	0	0	25	4	13.79	-	-	-	G	54941109	C	G	54941109	3	3	85	1	0	0	0	0	1	0	0	0	16836	507	18	4	883	4	TTYH1	19	54941109	Missense_Mutation	SNP	C	TCGA-A2-A1FZ-01A-51D-A17G-09	44264621	54941109	4187874	24	5705										
LAMA5	0	genome.wustl.edu	37	chr20	60937537	60937537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	ctctgccaccagcgctccgtGccatcgatggcattgctcgc	10	17	1	0			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	20	60937537	60937537	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	silent	c.369	p.G123	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	38	0	0	21	8	27.59	-	-	-	A	60937537	G	A	60937537	2	1	85	1	0	0	0	0	0	0	0	1	8663	1306	46	4		4	LAMA5	20	60937537	Silent	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		60937537	2087983	25	5706										
VSIG1	0	genome.wustl.edu	37	chrX	107310235	107310235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	atcgaattacagggtccaacGatccaggtaatgcatctatc	8	10	1	0			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	X	107310235	107310235	G	T	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.391	p.D131Y	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	53	0	0	35	4	10.26	-	-	-	T	107310235	G	T	107310235	3	4	85	1	0	0	0	0	1	0	0	0	17319	1058	37	3	405	3	VSIG1	23	107310235	Missense_Mutation	SNP	G	TCGA-A2-A1FZ-01A-51D-A17G-09		107310235	47960325	26	5707										
SLC6A14	0	genome.wustl.edu	37	chrX	115574821	115574821	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.785323410705996	1.41311475409836	3.5327868852459	0.883196721311475	1	1	0	tcctctttagtaactcactgTaatgtgagtacagtgaataa	7	7	2	2			TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	X	115574821	115574821	T	C	SNP	SLC6A14	ENST00000371900	human	ensembl	69_37n	1	known	silent	c.519	p.C173	0.998	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916	53	0	0	24	10	29.41	-	-	-	C	115574821	T	C	115574821	2	2	85	1	0	0	0	0	0	0	0	1	14766	1644	57	5		5	SLC6A14	23	115574821	Silent	SNP	T	TCGA-A2-A1FZ-01A-51D-A17G-09	8264586	115574821	39695739	27	5708										
MYT1L	0	genome.wustl.edu	37	chr2	1842924	1842924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	cagacgcggccactcacctgCggtgtgtgaggaagctgccg	15	13	1	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	2	1842924	1842924	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.3077	p.R1026H	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	9	0	0	6	4	40	-	-	-	T	1842924	C	T	1842924	3	4	86	1	0	0	0	0	1	0	0	0	10179	768	27	1	503	1	MYT1L	2	1842924	Missense_Mutation	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09		1842924	241356449	1	5709										
C2orf16	0	genome.wustl.edu	37	chr2	27802528	27802528	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gcttcctgtcctggtaaagtCagagtcttccctcagcatat	8	12	3	1			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	2	27802528	27802528	C	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	nonsense	c.3089	p.S1030*	0.128	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	40	0	0	52	13	20	-	-	-	A	27802528	C	A	27802528	4	1	86	1	0	0	0	0	0	1	0	0	2177	838	29	2	3091	2	C2orf16	2	27802528	Nonsense_Mutation	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09	25959604	27802528	215396845	2	5710										
XIRP2	0	genome.wustl.edu	37	chr2	168104843	168104843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	atttcctcttcctcctccacCtcctttgatgatgtttcctg	4	15	1	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	2	168104843	168104843	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.6941	p.P2314L	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	40	0	0	50	17	25.37	-	-	-	T	168104843	C	T	168104843	3	4	86	1	0	0	0	0	1	0	0	0	17527	681	24	4	6971	4	XIRP2	2	168104843	Missense_Mutation	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09	140302315	168104843	75094530	3	5711										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0	89	34	27.64	-	-	-	A	178936082	G	A	178936082	3	1	86	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09		178936082	19086348	4	5712										
EXOSC9	0	genome.wustl.edu	37	chr4	122737961	122737961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gtgcaaaacaagaaaaagcaCcaagtaaaaagccagtgaaa	8	7	0	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	4	122737961	122737961	C	T	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	missense	c.1321	p.P441S	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	63	0	0	84	26	23.64	-	-	-	T	122737961	C	T	122737961	3	4	86	1	0	0	0	0	1	0	0	0	5358	507	18	4	1371	4	EXOSC9	4	122737961	Missense_Mutation	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09		122737961	68416315	5	5713										
FAM153B	0	genome.wustl.edu	37	chr5	175540973	175540973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	catcaggaaaaccagaaagcCcaagaagaaaaccaggaagc	9	10	1	3			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	5	175540973	175540973	C	T	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	missense	c.1085	p.P362L	0.000	NULL	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	26	0	0	40	13	24.07	-	-	-	T	175540973	C	T	175540973	3	4	86	1	0	0	0	0	1	0	0	0	5501	623	22	4	1167	4	FAM153B	5	175540973	Missense_Mutation	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09		175540973	5374287	6	5714										
TNXB	0	genome.wustl.edu	37	chr6	32041597	32041597	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ccttgtactggactatgaagGagtcaaactggccctcgggg	13	10	1	1			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	6	32041597	32041597	G	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.4508	p.S1503Y	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	10	0	0	4	5	55.56	-	-	-	T	32041597	G	T	32041597	3	4	86	1	0	0	0	0	1	0	0	0	16441	1174	41	2	10337	2	TNXB	6	32041597	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09		32041597	139073470	7	5715										
ARL4A	0	genome.wustl.edu	37	chr7	12728294	12728294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ttgctaacaaacaagatttgAggaactcattgtcactttca	6	8	3	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	7	12728294	12728294	A	G	SNP	ARL4A	ENST00000356797	human	ensembl	69_37n	1	known	missense	c.415	p.R139G	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4A	HGNC	ENSG00000122644	67	0	0	119	25	17.36	-	-	-	G	12728294	A	G	12728294	3	3	86	1	0	0	0	0	1	0	0	0	940	295	11	5	417	5	ARL4A	7	12728294	Missense_Mutation	SNP	A	TCGA-A2-A1G0-01A-11D-A13L-09		12728294	146410369	8	5716										
LRRC4C	0	genome.wustl.edu	37	chr11	40137268	40137268	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	agttggacagaccttcaaagGcaccttctgagatgtatgaa	10	8	2	3			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	11	40137268	40137268	G	C	SNP	LRRC4C	ENST00000527150	human	ensembl	69_37n	-1	known	missense	c.575	p.A192G	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	LRRC4C	HGNC	ENSG00000148948	44	0	0	54	28	34.15	-	-	-	C	40137268	G	C	40137268	3	2	86	1	0	0	0	0	1	0	0	0	9074	1203	42	4	1351	4	LRRC4C	11	40137268	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09		40137268	94869248	9	5717										
GRIN2B	0	genome.wustl.edu	37	chr12	13715969	13715969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	tgcctgaagaagtaggatttGctgccatggagcaagcactg	13	8	0	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	12	13715969	13715969	G	T	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.4203	p.S1401R	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	42	0	0	36	13	26.53	-	-	-	T	13715969	G	T	13715969	3	4	86	1	0	0	0	0	1	0	0	0	6831	1310	46	4	255	4	GRIN2B	12	13715969	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09		13715969	120135926	10	5718										
MAP3K12	0	genome.wustl.edu	37	chr12	53876974	53876974	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ccgtcttgaggatatctggcCtggaagaagaggaaaagtaa	13	6	2	3			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	12	53876974	53876974	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	splice_site	c.1515-1	e11-1	1.000	-	-	-	no_errors	MAP3K12	HGNC	ENSG00000139625	32	0	0	35	15	30	-	-	-	T	53876974	C	T	53876974	5	4	86	1	0	0	0	0	0	0	1	0	9317	695	24	4	1081	4	MAP3K12	12	53876974	Splice_Site	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09	40161005	53876974	79974921	11	5719										
WSCD2	0	genome.wustl.edu	37	chr12	108618544	108618544	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gcagtgttccggggctgcttCcgcaggcccgacaacctttc	12	15	0	0			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	12	108618544	108618544	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	silent	c.711	p.F237	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	27	0	0	25	12	32.43	-	-	-	T	108618544	C	T	108618544	2	4	86	1	0	0	0	0	0	0	0	1	17504	854	30	2		2	WSCD2	12	108618544	Silent	SNP	C	TCGA-A2-A1G0-01A-11D-A13L-09	54741570	108618544	25233351	12	5720										
MEFV	0	genome.wustl.edu	37	chr16	3293864	3293864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	tgatctgggcacttaccagcAtgtgcctgagcgccaatcag	11	12	2	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	16	3293864	3293864	A	G	SNP	MEFV	ENST00000541159	human	ensembl	69_37n	-1	putative	missense	c.1330	p.C444R	0.911	NULL	pfam_DAPIN,pfam_Znf_B-box,superfamily_DEATH-like,smart_Znf_B-box,pfscan_DAPIN,pfscan_Znf_B-box	-	no_errors	MEFV	HGNC	ENSG00000103313	34	0	0	44	16	26.67	-	-	-	G	3293864	A	G	3293864	3	3	86	1	0	0	0	0	1	0	0	0	9530	214	8	5	565	5	MEFV	16	3293864	Missense_Mutation	SNP	A	TCGA-A2-A1G0-01A-11D-A13L-09		3293864	87060889	13	5721										
ARMC5	0	genome.wustl.edu	37	chr16	31474092	31474092	+	Splice_Site	SNP	G	G	A													0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ggggccctgggccggctgcaGgctctgggacttgtgcctct							TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	16	31474092	31474092	G	A	SNP	ARMC5	ENST00000412665	human	ensembl	69_37n	1	known	splice_site	c.157-1	e3-1	1.000	-	-	-	no_errors	ARMC5	HGNC	ENSG00000140691	49	0	0	63	18	22.22	-	-	-	A	31474092	G	A	31474092	5	1	86	1	0	0	0	0	0	0	1	0	958	991	35	4	1234	4	ARMC5	16	31474092	Splice_Site	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09	28180228	31474092	58880661	14	5722	43	2								
ARMC5	0	genome.wustl.edu	37	chr16	31474093	31474093	+	Missense_Mutation	SNP	G	G	T													0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gggccctgggccggctgcagGctctgggacttgtgcctctc							TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	16	31474093	31474093	G	T	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	missense	c.1510	p.A504S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	47	0	0	62	18	22.5	-	-	-	T	31474093	G	T	31474093	3	4	86	1	0	0	0	0	1	0	0	0	958	1203	42	4	1235	4	ARMC5	16	31474093	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09	1	31474093	58880660	15	5723	43	2								
CDH1	0	genome.wustl.edu	37	chr16	68867353	68867353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	ctacttgaacgaatggggcaAtcgcttcaagaagctggctg	12	9	1	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	16	68867353	68867353	A	G	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.2600	p.N867S	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	39	0	0	35	22	38.6	-	-	-	G	68867353	A	G	68867353	3	3	86	1	0	0	0	0	1	0	0	0	3124	101	4	5	2662	5	CDH1	16	68867353	Missense_Mutation	SNP	A	TCGA-A2-A1G0-01A-11D-A13L-09	37393260	68867353	21487400	16	5724										
MAP2K4	0	genome.wustl.edu	37	chr17	12032516	12032517	+	Frame_Shift_Del	DEL	AC	AC	-													0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	atagtgtatttgatcaactaAcacaagtcgtgaaaggagat							TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	17	12032516	12032517	AC	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_del	c.985_986	p.Q330fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	53	0	0	39	23	36.51	-	-	-	-	12032517	AC	-	12032516	7	5	86	1	0	1	0	1	0	0	0	0	9310	43	2	0	986	0	MAP2K4	17	12032516	Frame_Shift_Del	DEL	AC	TCGA-A2-A1G0-01A-11D-A13L-09		12032516	69162694	17	5725										
SHANK3	0	genome.wustl.edu	37	chr22	51121781	51121781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gcaacaggagagctgtgctcGtgtcctgctcttccgtggag	14	11	1	1			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	22	51121781	51121781	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	69_37n	1	known	missense	c.899	p.R300H	0.951	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	46	0	0	86	57	39.58	-	-	-	A	51121781	G	A	51121781	3	1	86	1	0	0	0	0	1	0	0	0	14355	1145	40	1	929	1	SHANK3	22	51121781	Missense_Mutation	SNP	G	TCGA-A2-A1G0-01A-11D-A13L-09		51121781	182785	18	5726										
TLR8	0	genome.wustl.edu	37	chrX	12937900	12937900	+	Frame_Shift_Del	DEL	T	T	-													0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	gatttcaagggattgataaaTttaacattactagatttaag							TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	X	12937900	12937900	T	-	DEL	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	frame_shift_del	c.741	p.L248fs	0.827	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	49	0	0	36	14	26.42	-	-	-	-	12937900	T	-	12937900	7	5	86	1	0	1	0	1	0	0	0	0	16052	1490	52	0	747	0	TLR8	23	12937900	Frame_Shift_Del	DEL	T	TCGA-A2-A1G0-01A-11D-A13L-09		12937900	142332660	19	5727										
HDX	0	genome.wustl.edu	37	chrX	83730290	83730290	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.993476777398216	0.679012345679012	0	0.763888888888889	1	1	0	tgaagtccagcttagtctccTgtgcacactgtaatatgagc	9	10	1	2			TCGA-A2-A1G0-01A-11D-A13L-09	TCGA-A2-A1G0-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7eacf95-478d-4d81-a5e3-f5a8938c83ec	eb1176bf-f7d8-4fdf-ae03-a998c8bdc047	X	83730290	83730290	T	G	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.116	p.Q39P	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	65	0	0	90	33	26.83	-	-	-	G	83730290	T	G	83730290	3	3	86	1	0	0	0	0	1	0	0	0	7077	1580	55	5	1992	5	HDX	23	83730290	Missense_Mutation	SNP	T	TCGA-A2-A1G0-01A-11D-A13L-09	70792390	83730290	71540270	20	5728										
ATPAF1	0	genome.wustl.edu	37	chr1	47119504	47119504	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	cttacaggaataactgcgtaGactgtatcttttgctgcaaa	8	8	1	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	1	47119504	47119504	G	A	SNP	ATPAF1	ENST00000576409	human	ensembl	69_37n	-1	known	silent	c.594	p.V198	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472	88	0	0	64	19	22.89	-	-	-	A	47119504	G	A	47119504	2	1	87	1	0	0	0	0	0	0	0	1	1204	929	33	2		2	ATPAF1	1	47119504	Silent	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09		47119504	202131117	1	5729										
TRIB2	0	genome.wustl.edu	37	chr2	12880637	12880637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	gctgtacaccatgttggtggGgcggtaccctttccatgaca	12	11	0	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	12880637	12880637	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	missense	c.749	p.G250E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	40	0	0	25	12	32.43	-	-	-	A	12880637	G	A	12880637	3	1	87	1	0	0	0	0	1	0	0	0	16579	1232	43	4	759	4	TRIB2	2	12880637	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09		12880637	230318736	2	5730										
HS6ST1	0	genome.wustl.edu	37	chr2	129075961	129075961	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ttctcgtagtgggggtcgggTgtggggaacaggtccaggtc	19	7	1	0			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	129075961	129075961	T	C	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	silent	c.177	p.T59	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	12	0	0	6	7	53.85	-	-	-	C	129075961	T	C	129075961	2	2	87	1	0	0	0	0	0	0	0	1	7421	1683	59	5		5	HS6ST1	2	129075961	Silent	SNP	T	TCGA-A2-A1G1-01A-21D-A13L-09	116195324	129075961	114123412	3	5731										
XIRP2	0	genome.wustl.edu	37	chr2	168102346	168102346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	agacagtcactcaggaagatGtgcagaaaggtgatgttaag	13	5	2	4			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	168102346	168102346	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.4444	p.V1482L	0.656	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	40	0	0	35	9	20.45	-	-	-	T	168102346	G	T	168102346	3	4	87	1	0	0	0	0	1	0	0	0	17527	1377	48	4	4474	4	XIRP2	2	168102346	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09	39026385	168102346	75097027	4	5732										
TTN	0	genome.wustl.edu	37	chr2	179469435	179469435	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	aaatattcagaagagtttacCccatatcttttctctacagc	4	10	3	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	179469435	179469435	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.46677	p.G15559	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	85	0	0	53	22	29.33	-	-	-	G	179469435	C	G	179469435	2	3	87	1	0	0	0	0	0	0	0	1	16832	637	22	4		4	TTN	2	179469435	Silent	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09	11367089	179469435	63729938	5	5733										
AOX1	0	genome.wustl.edu	37	chr2	201467067	201467070	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tgcatgcaagactttctgtaAagtaagtggaaaggaccaca							TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	201467067	201467070	AAGT	-	DEL	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	frame_shift_del	c.497_498	p.K166fs	1.000:0.998	superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	91	0	0	39	8	17.02	-	-	-	-	201467070	AAGT	-	201467067	7	5	87	1	0	1	0	1	0	0	0	0	730	28	1	0	519	0	AOX1	2	201467067	Frame_Shift_Del	DEL	AAGT	TCGA-A2-A1G1-01A-21D-A13L-09	21997632	201467067	41732306	6	5734										
SLC41A3	0	genome.wustl.edu	37	chr3	125727702	125727702	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ccaccagcaagagcaggactCgagctgacatggaattgatt	11	10	0	3			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	125727702	125727702	C	T	SNP	SLC41A3	ENST00000315891	human	ensembl	69_37n	-1	known	missense	c.1127	p.R376Q	1.000	pfam_MgtE_Mg_transptr_membr	pfam_MgtE_Mg_transptr_membr,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	SLC41A3	HGNC	ENSG00000114544	28	0	0	11	12	52.17	-	-	-	T	125727702	C	T	125727702	3	4	87	1	0	0	0	0	1	0	0	0	14720	884	31	1	506	1	SLC41A3	3	125727702	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		125727702	72294728	7	5735										
ZBTB38	0	genome.wustl.edu	37	chr3	141161656	141161656	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ttctgtattactgaaaagggAgtggttaaagaagaaaaaaa	10	2	1	3			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	141161656	141161656	A	C	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	silent	c.429	p.G143	0.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	47	0	0	33	6	15.38	-	-	-	C	141161656	A	C	141161656	2	2	87	1	0	0	0	0	0	0	0	1	17635	291	11	5		5	ZBTB38	3	141161656	Silent	SNP	A	TCGA-A2-A1G1-01A-21D-A13L-09	15433954	141161656	56860774	8	5736										
MAP3K1	0	genome.wustl.edu	37	chr5	56177035	56177035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	atagactgttgttggaatttCctgctgaattttatcctcat	7	7	1	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	5	56177035	56177035	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.2305	p.P769S	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	139	0	0	81	15	15.62	-	-	-	T	56177035	C	T	56177035	3	4	87	1	0	0	0	0	1	0	0	0	9314	855	30	2	2355	2	MAP3K1	5	56177035	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		56177035	124738225	9	5737										
CENPK	0	genome.wustl.edu	37	chr5	64814460	64814460	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	aaataatctatttataagaaTctaggagaaaatatcattca	4	4	4	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	5	64814460	64814460	T	A	SNP	CENPK	ENST00000242872	human	ensembl	69_37n	-1	known	missense	c.652	p.I218F	1.000	pfam_Centromere_CenpK	pfam_Centromere_CenpK,superfamily_Prefoldin	-	no_errors	CENPK	HGNC	ENSG00000123219	48	0	0	28	10	26.32	-	-	-	A	64814460	T	A	64814460	3	1	87	1	0	0	0	0	1	0	0	0	3264	1449	50	5	161	5	CENPK	5	64814460	Missense_Mutation	SNP	T	TCGA-A2-A1G1-01A-21D-A13L-09	8637425	64814460	116100800	10	5738										
TSPAN12	0	genome.wustl.edu	37	chr7	120446741	120446741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	aaatatactactccacagcaCttaaactgcaaaaaaaatca	2	10	1	0			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	7	120446741	120446741	C	A	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	missense	c.474	p.K158N	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	47	0	0	34	6	15	-	-	-	A	120446741	C	A	120446741	3	1	87	1	0	0	0	0	1	0	0	0	16732	564	20	4	451	4	TSPAN12	7	120446741	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		120446741	38691922	11	5739										
PTPRZ1	0	genome.wustl.edu	37	chr7	121659196	121659196	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	agaggccagtaatagtagccAtgagtctcgtattggtctag	12	7	2	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	7	121659196	121659196	A	G	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.4862	p.H1621R	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	138	0	0	78	12	13.33	-	-	-	G	121659196	A	G	121659196	3	3	87	1	0	0	0	0	1	0	0	0	12897	217	8	5	4912	5	PTPRZ1	7	121659196	Missense_Mutation	SNP	A	TCGA-A2-A1G1-01A-21D-A13L-09	1212455	121659196	37479467	12	5740										
FAM86B1	0	genome.wustl.edu	37	chr8	12044262	12044262	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	cattctgcaaggtagagggcGgcatcccatgtgaccaggcc	13	12	1	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	8	12044262	12044262	G	A	SNP	FAM86B1	ENST00000321602	human	ensembl	69_37n	-1	known	missense	c.5	p.P2L	0.966	NULL	NULL	-	no_errors	FAM86B1	HGNC	ENSG00000186523	10	0	0	13	7	35	-	-	-	A	12044262	G	A	12044262	3	1	87	1	0	0	0	0	1	0	0	0	5689	1103	39	1	585	1	FAM86B1	8	12044262	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09		12044262	134319760	13	5741										
NFIB	0	genome.wustl.edu	37	chr9	14307139	14307139	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tccaaggggatgcctttgaaCaggatcaccatgactagatc	10	10	1	3			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	9	14307139	14307139	C	G	SNP	NFIB	ENST00000397581	human	ensembl	69_37n	-1	known	silent	c.411	p.L137	1.000	pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIB	HGNC	ENSG00000147862	85	0	0	42	8	16	-	-	-	G	14307139	C	G	14307139	2	3	87	1	0	0	0	0	0	0	0	1	10443	465	17	4		4	NFIB	9	14307139	Silent	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		14307139	126906292	14	5742										
CORO2A	0	genome.wustl.edu	37	chr9	100888910	100888910	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ttttcttctcctccagcctgTgttctgctgcccaccttggc	7	16	3	0			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	9	100888910	100888910	T	G	SNP	CORO2A	ENST00000343933	human	ensembl	69_37n	-1	known	missense	c.1367	p.H456P	0.002	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789	74	0	0	45	9	16.67	-	-	-	G	100888910	T	G	100888910	3	3	87	1	0	0	0	0	1	0	0	0	3786	1696	59	5	218	5	CORO2A	9	100888910	Missense_Mutation	SNP	T	TCGA-A2-A1G1-01A-21D-A13L-09	86581771	100888910	40324521	15	5743										
SEPHS1	0	genome.wustl.edu	37	chr10	13378339	13378339	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tcactgaggacattggcacaCgctatcctgccctgggaaga	11	12	1	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	10	13378339	13378339	C	T	SNP	SEPHS1	ENST00000327347	human	ensembl	69_37n	-1	known	silent	c.309	p.A103	0.756	pfam_AIR_synth,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475	59	0	0	35	14	28.57	-	-	-	T	13378339	C	T	13378339	2	4	87	1	0	0	0	0	0	0	0	1	14142	523	19	1		1	SEPHS1	10	13378339	Silent	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		13378339	122156408	16	5744										
EPS8L2	0	genome.wustl.edu	37	chr11	722123	722125	+	In_Frame_Del	DEL	CGC	CGC	-													0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	aagcacatccagaaccccagCgccgcggagctcgtgcactt							TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	CGC	CGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	11	722123	722125	CGC	-	DEL	EPS8L2	ENST00000318562	human	ensembl	69_37n	1	known	in_frame_del	c.1017_1019	p.A341in_frame_del	0.999:1.000:0.998	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106	17	0	0	11	2	15.38	-	-	-	-	722125	CGC	-	722123	7	5	87	1	0	1	0	1	0	0	0	0	5233	767	27	0	1059	0	EPS8L2	11	722123	In_Frame_Del	DEL	CGC	TCGA-A2-A1G1-01A-21D-A13L-09		722123	134284393	17	5745										
SF3B2	0	genome.wustl.edu	37	chr11	65826508	65826508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tctttaagaggatctttgagGcttttaaggtacaaggagag	12	4	2	3			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	11	65826508	65826508	G	A	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	missense	c.1174	p.A392T	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	52	0	0	32	7	17.95	-	-	-	A	65826508	G	A	65826508	3	1	87	1	0	0	0	0	1	0	0	0	14239	1203	42	4	1212	4	SF3B2	11	65826508	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09	65104385	65826508	69180008	18	5746										
MCAM	0	genome.wustl.edu	37	chr11	119185262	119185262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	gacttgaggaatggggtaccCgttcctccctacacaggtag	12	11	0	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	11	119185262	119185262	C	T	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	missense	c.496	p.G166R	0.981	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	29	0	0	12	12	50	-	-	-	T	119185262	C	T	119185262	3	4	87	1	0	0	0	0	1	0	0	0	9439	652	23	1	1492	1	MCAM	11	119185262	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09	53358754	119185262	15821254	19	5747										
SLC7A8	0	genome.wustl.edu	37	chr14	23609736	23609736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	agaaagttccagcctccataGgcaaaggagccctgaaggaa	11	10	0	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	14	23609736	23609736	G	T	SNP	SLC7A8	ENST00000339733	human	ensembl	69_37n	-1	known	missense	c.368	p.P123H	1.000	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC7A8	HGNC	ENSG00000092068	59	0	0	35	4	10.26	-	-	-	T	23609736	G	T	23609736	3	4	87	1	0	0	0	0	1	0	0	0	14793	987	35	4	903	4	SLC7A8	14	23609736	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09		23609736	83739804	20	5748										
CREBBP	0	genome.wustl.edu	37	chr16	3827658	3827658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ctggcagggacaggggtccaTctatggtggcaaaacaaaaa	13	8	1	0			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	16	3827658	3827658	T	C	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.2114	p.N705S	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	43	0	0	30	13	30.23	-	-	-	C	3827658	T	C	3827658	3	2	87	1	0	0	0	0	1	0	0	0	3891	1449	50	5	5298	5	CREBBP	16	3827658	Missense_Mutation	SNP	T	TCGA-A2-A1G1-01A-21D-A13L-09		3827658	86527095	21	5749										
TP53	0	genome.wustl.edu	37	chr17	7577609	7577609	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	gtggtacagtcagagccaacCtaggagataacacaggccca	11	11	1	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	7577609	7577609	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.673-1	e6-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	63	0	0	17	17	50	-	-	-	T	7577609	C	T	7577609	5	4	87	1	0	0	0	0	0	0	1	0	16477	695	24	4	618	4	TP53	17	7577609	Splice_Site	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		7577609	73617601	22	5750										
KRT31	0	genome.wustl.edu	37	chr17	39551243	39551243	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	agctgggactccacgttggtGatcaggctctgcacctggga	14	11	2	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	39551243	39551243	G	T	SNP	KRT31	ENST00000251645	human	ensembl	69_37n	-1	known	silent	c.954	p.I318	0.997	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796	110	0	0	99	87	46.77	-	-	-	T	39551243	G	T	39551243	2	4	87	1	0	0	0	0	0	0	0	1	8520	1280	45	2		2	KRT31	17	39551243	Silent	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09	31973634	39551243	41643967	23	5751										
MRPS7	0	genome.wustl.edu	37	chr17	73259535	73259536	+	Frame_Shift_Del	DEL	TG	TG	-													0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tccatcaagcactgaaaaacTgtgagcctatgattgggctg							TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	73259535	73259536	TG	-	DEL	MRPS7	ENST00000245539	human	ensembl	69_37n	1	known	frame_shift_del	c.454_455	p.C152fs	1.000:1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	-	no_errors	MRPS7	HGNC	ENSG00000125445	67	0	0	47	13	21.31	-	-	-	-	73259536	TG	-	73259535	7	5	87	1	0	1	0	1	0	0	0	0	9920	1580	55	0	468	0	MRPS7	17	73259535	Frame_Shift_Del	DEL	TG	TCGA-A2-A1G1-01A-21D-A13L-09	33708292	73259535	7935675	24	5752										
MOCOS	0	genome.wustl.edu	37	chr18	33785062	33785062	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ggaatggagaatataaagcaGcacaccttcaccttggctca	9	10	2	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	18	33785062	33785062	G	A	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	silent	c.1041	p.Q347	0.656	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	50	0	0	34	11	24.44	-	-	-	A	33785062	G	A	33785062	2	1	87	1	0	0	0	0	0	0	0	1	9761	962	34	4		4	MOCOS	18	33785062	Silent	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09		33785062	44292186	25	5753										
LPPR2	0	genome.wustl.edu	37	chr19	11475316	11475316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	tctatccctcccccttccacCgggacaacttcagcccttac	4	20	2	0			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	19	11475316	11475316	C	T	SNP	LPPR2	ENST00000591608	human	ensembl	69_37n	1	known	missense	c.1234	p.R412W	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	42	0	0	15	4	19.05	-	-	-	T	11475316	C	T	11475316	3	4	87	1	0	0	0	0	1	0	0	0	8991	643	23	1	1339	1	LPPR2	19	11475316	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		11475316	47653667	26	5754										
MXRA5	0	genome.wustl.edu	37	chrX	3242907	3242907	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	attgaaggcttcagacaagtCatgtccttcagcttgtgtat	9	8	3	2			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	X	3242907	3242907	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.819	p.M273I	0.000	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	70	0	0	39	10	20.41	-	-	-	A	3242907	C	A	3242907	3	1	87	1	0	0	0	0	1	0	0	0	10075	826	29	2	7679	2	MXRA5	23	3242907	Missense_Mutation	SNP	C	TCGA-A2-A1G1-01A-21D-A13L-09		3242907	152027653	27	5755										
PHKA2	0	genome.wustl.edu	37	chrX	18911702	18911702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	1	0.489878542510121	0	0.578947368421053	1	1	0	ccataagccccactcggagcGctgtcataaaagaagtggca	10	12	1	1			TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	X	18911702	18911702	G	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.3609	p.S1203R	0.755	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	86	0	0	38	8	17.39	-	-	-	T	18911702	G	T	18911702	3	4	87	1	0	0	0	0	1	0	0	0	11918	1078	38	3	102	3	PHKA2	23	18911702	Missense_Mutation	SNP	G	TCGA-A2-A1G1-01A-21D-A13L-09	15668795	18911702	136358858	28	5756										
SPATA21	0	genome.wustl.edu	37	chr1	16730302	16730302	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	atctcaaagagtagagtgtgGgggttgtggggagccatgtc	17	5	1	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	16730302	16730302	G	C	SNP	SPATA21	ENST00000335496	human	ensembl	69_37n	-1	known	silent	c.921	p.P307	0.995	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SPATA21	HGNC	ENSG00000187144	46	0	0	58	25	30.12	-	-	-	C	16730302	G	C	16730302	2	2	88	1	0	0	0	0	0	0	0	1	15098	1219	43	4		4	SPATA21	1	16730302	Silent	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09		16730302	232520319	1	5757										
YBX1	0	genome.wustl.edu	37	chr1	43166508	43166508	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	caatgaagaagataaagaaaAtcaaggagatgagacccaag	10	5	1	6			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	43166508	43166508	A	G	SNP	YBX1	ENST00000321358	human	ensembl	69_37n	1	known	missense	c.797	p.N266S	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX1	HGNC	ENSG00000065978	39	0	0	39	26	40	-	-	-	G	43166508	A	G	43166508	3	3	88	1	0	0	0	0	1	0	0	0	17566	101	4	5	823	5	YBX1	1	43166508	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	26436206	43166508	206084113	2	5758										
SLC9A4	0	genome.wustl.edu	37	chr2	103095467	103095467	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ccacccatcgttctggagggCggctacttcatgcccacccg	10	17	2	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	103095467	103095467	C	T	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	1	known	silent	c.426	p.G142	0.002	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	85	0	0	44	21	32.31	-	-	-	T	103095467	C	T	103095467	2	4	88	1	0	0	0	0	0	0	0	1	14805	755	27	1		1	SLC9A4	2	103095467	Silent	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09		103095467	140103906	3	5759										
ITGA4	0	genome.wustl.edu	37	chr2	182339788	182339788	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	agccaggagaaaatggatccAtcgtggtaggtattggaact	13	6	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	182339788	182339788	A	G	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.421	p.I141V	0.138	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	73	0	0	76	39	33.91	-	-	-	G	182339788	A	G	182339788	3	3	88	1	0	0	0	0	1	0	0	0	7932	217	8	5	431	5	ITGA4	2	182339788	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	79244321	182339788	60859585	4	5760										
COL6A5	0	genome.wustl.edu	37	chr3	130159404	130159407	+	Frame_Shift_Del	DEL	CTAT	CTAT	-													0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	aatctttttccagaaacaccCtatctaagaaaacacaaggt							TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	CTAT	CTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	130159404	130159407	CTAT	-	DEL	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	frame_shift_del	c.6222_6225	p.Y2075fs	0.000:0.000:0.004:0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	78	0	0	83	45	35.16	-	-	-	-	130159407	CTAT	-	130159404	7	5	88	1	0	1	0	1	0	0	0	0	3732	668	24	0	6356	0	COL6A5	3	130159404	Frame_Shift_Del	DEL	CTAT	TCGA-A2-A1G4-01A-11D-A13L-09		130159404	67863026	5	5761										
ETV5	0	genome.wustl.edu	37	chr3	185783693	185783693	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	cctggcatgcccgggaccccAtgttcatagagtgggtcatg	13	12	2	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	185783693	185783693	A	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.945	p.H315Q	0.076	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	38	0	0	47	22	31.43	-	-	-	T	185783693	A	T	185783693	3	4	88	1	0	0	0	0	1	0	0	0	5319	214	8	5	737	5	ETV5	3	185783693	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	55624289	185783693	12238737	6	5762										
S100P	0	genome.wustl.edu	37	chr4	6695772	6695774	+	In_Frame_Del	DEL	AGA	AGA	-													0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ggagctcaaggtgctgatggAgaaggagctaccaggcttcc							TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	6695772	6695774	AGA	-	DEL	S100P	ENST00000296370	human	ensembl	69_37n	1	known	in_frame_del	c.113_115	p.K39in_frame_del	0.995:0.995:0.994	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100P	HGNC	ENSG00000163993	18	0	0	23	9	28.12	-	-	-	-	6695774	AGA	-	6695772	7	5	88	1	0	1	0	1	0	0	0	0	13876	304	11	0	115	0	S100P	4	6695772	In_Frame_Del	DEL	AGA	TCGA-A2-A1G4-01A-11D-A13L-09		6695772	184458504	7	5763										
PPARGC1A	0	genome.wustl.edu	37	chr4	23816043	23816043	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ggacttgctgagttgtgcatAcaactcggattgctccggcc	12	11	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	23816043	23816043	A	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	missense	c.1063	p.Y355N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	90	0	0	80	53	39.55	-	-	-	T	23816043	A	T	23816043	3	4	88	1	0	0	0	0	1	0	0	0	12373	391	14	5	1357	5	PPARGC1A	4	23816043	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	17120271	23816043	167338233	8	5764										
MYO6	0	genome.wustl.edu	37	chr6	76538265	76538265	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tttatgtcttaggttcactaAtgtatttaaatgaagccaca	6	6	2	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	76538265	76538265	A	T	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.196	p.M66L	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	197	0	0	114	59	34.1	-	-	-	T	76538265	A	T	76538265	3	4	88	1	0	0	0	0	1	0	0	0	10153	101	4	5	206	5	MYO6	6	76538265	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09		76538265	94576802	9	5765										
IBTK	0	genome.wustl.edu	37	chr6	82924534	82924534	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gatgatgaggacacagctggAatttcataaaggctagaaag	12	5	1	3			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	82924534	82924534	A	G	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	silent	c.1614	p.I538	1.000	superfamily_BTB/POZ_fold	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	31	0	0	34	22	39.29	-	-	-	G	82924534	A	G	82924534	2	3	88	1	0	0	0	0	0	0	0	1	7530	242	9	5		5	IBTK	6	82924534	Silent	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	6386269	82924534	88190533	10	5766										
SLC22A16	0	genome.wustl.edu	37	chr6	110763635	110763635	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tggggctattactaacaggaCcttgtaggtccagtgataaa	11	7	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	110763635	110763635	C	A	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.995	p.G332V	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	123	0	0	55	40	42.11	-	-	-	A	110763635	C	A	110763635	3	1	88	1	0	0	0	0	1	0	0	0	14536	507	18	4	758	4	SLC22A16	6	110763635	Missense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	27839101	110763635	60351432	11	5767										
MCM9	0	genome.wustl.edu	37	chr6	119245057	119245057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gagaggcaagtgaatttagaGgaatcacagctctccaagct	11	8	2	3			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	119245057	119245057	G	A	SNP	MCM9	ENST00000316316	human	ensembl	69_37n	-1	known	silent	c.540	p.S180	0.625	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	44	0	0	73	43	37.07	-	-	-	A	119245057	G	A	119245057	2	1	88	1	0	0	0	0	0	0	0	1	9465	987	35	4		4	MCM9	6	119245057	Silent	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09	8481422	119245057	51870010	12	5768										
POM121	0	genome.wustl.edu	37	chr7	72413443	72413443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	cgggagccaacccccagcccGcatttggggccgctgagggg	16	15	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	7	72413443	72413443	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.2911	p.A971T	0.007	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	17	0	0	42	16	27.59	-	-	-	A	72413443	G	A	72413443	3	1	88	1	0	0	0	0	1	0	0	0	12313	1087	38	1	2154	1	POM121	7	72413443	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09		72413443	86725220	13	5769										
FOXD4L3	0	genome.wustl.edu	37	chr9	70918829	70918829	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gcgtcgccaccgggaggcggAtgcatctctttcagcattga	13	12	2	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	70918829	70918829	A	T	SNP	FOXD4L3	ENST00000342833	human	ensembl	69_37n	1	known	missense	c.962	p.D321V	0.110	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559	38	0	0	23	10	30.3	-	-	-	T	70918829	A	T	70918829	3	4	88	1	0	0	0	0	1	0	0	0	6048	333	12	5	964	5	FOXD4L3	9	70918829	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09		70918829	70294602	14	5770										
OBP2B	0	genome.wustl.edu	37	chr9	136083528	136083528	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ggaggggctcacaggcgctgTatttgccaggctcctccgtc	14	13	1	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	136083528	136083528	T	A	SNP	OBP2B	ENST00000372034	human	ensembl	69_37n	-1	known	missense	c.269	p.Y90F	0.224	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102	35	0	0	32	5	13.51	-	-	-	A	136083528	T	A	136083528	3	1	88	1	0	0	0	0	1	0	0	0	10884	1638	57	5	259	5	OBP2B	9	136083528	Missense_Mutation	SNP	T	TCGA-A2-A1G4-01A-11D-A13L-09	65164699	136083528	5129903	15	5771										
RXRA	0	genome.wustl.edu	37	chr9	137309085	137309085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	cagcgccaacgaggacatgcCggtggagaggatcctggagg	17	10	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	137309085	137309085	C	T	SNP	RXRA	ENST00000481739	human	ensembl	69_37n	1	known	missense	c.692	p.P231L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	22	0	0	36	27	42.86	-	-	-	T	137309085	C	T	137309085	3	4	88	1	0	0	0	0	1	0	0	0	13849	652	23	1	710	1	RXRA	9	137309085	Missense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	1225557	137309085	3904346	16	5772										
RET	0	genome.wustl.edu	37	chr10	43613868	43613868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	acctgctgtcagagttcaacGtcctgaagcaggtcaaccac	9	13	3	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	10	43613868	43613868	G	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.2332	p.V778I	1.000	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	21	0	0	32	20	38.46	-	-	-	A	43613868	G	A	43613868	3	1	88	1	0	0	0	0	1	0	0	0	13318	1145	40	1	2382	1	RET	10	43613868	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09		43613868	91920879	17	5773										
MYOF	0	genome.wustl.edu	37	chr10	95085598	95085598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tttacctgggaaatgttgggCtggaaggtgctgtgcaaagt	15	5	0	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	10	95085598	95085598	C	T	SNP	MYOF	ENST00000463743	human	ensembl	69_37n	-1	known	missense	c.3437	p.S1146N	1.000	NULL	pfam_Ferlin_B-domain,pfam_C2_Ca-dep,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peroxin/Ferlin,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYOF	HGNC	ENSG00000138119	100	0	0	61	56	47.86	-	-	-	T	95085598	C	T	95085598	3	4	88	1	0	0	0	0	1	0	0	0	10161	796	28	4	965	4	MYOF	10	95085598	Missense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	51471730	95085598	40449149	18	5774										
OR52B4	0	genome.wustl.edu	37	chr11	4389301	4389301	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tgaggaatggtgcacgtggaGaggacaatgtctgctccagc	15	8	1	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	4389301	4389301	G	A	SNP	OR52B4	ENST00000408920	human	ensembl	69_37n	-1	known	silent	c.225	p.L75	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996	182	0	0	82	53	39.26	-	-	-	A	4389301	G	A	4389301	2	1	88	1	0	0	0	0	0	0	0	1	11185	929	33	2		2	OR52B4	11	4389301	Silent	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09		4389301	130617215	19	5775										
HNRNPUL2	0	genome.wustl.edu	37	chr11	62487502	62487502	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ctaagacacccacctttcatCtccagcattatagattcagg	5	13	3	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	62487502	62487502	C	T	SNP	HNRNPUL2	ENST00000301785	human	ensembl	69_37n	-1	known	silent	c.1773	p.E591	1.000	pfam_Chromatin_KTI12	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753	147	0	0	129	397	75.33	-	-	-	T	62487502	C	T	62487502	2	4	88	1	0	0	0	0	0	0	0	1	7326	912	32	2		2	HNRNPUL2	11	62487502	Silent	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	58098201	62487502	72519014	20	5776										
PRDX5	0	genome.wustl.edu	37	chr11	64087239	64087239	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tcccagcagtggaggtgtttGaaggggagccagggaacaag	17	7	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	64087239	64087239	G	A	SNP	PRDX5	ENST00000265462	human	ensembl	69_37n	1	known	missense	c.205	p.E69K	1.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432	23	0	0	46	118	71.52	-	-	-	A	64087239	G	A	64087239	3	1	88	1	0	0	0	0	1	0	0	0	12549	1291	45	2	211	2	PRDX5	11	64087239	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09	1599737	64087239	70919277	21	5777										
KDM2A	0	genome.wustl.edu	37	chr11	66995613	66995613	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	cccacctaactaaggaatttCagaaagagtccctcagcatg	7	12	2	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	66995613	66995613	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	nonsense	c.1063	p.Q355*	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	58	0	0	134	266	66.33	-	-	-	T	66995613	C	T	66995613	4	4	88	1	0	0	0	0	0	1	0	0	8178	827	29	2	1101	2	KDM2A	11	66995613	Nonsense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	2908374	66995613	68010903	22	5778										
AMOTL1	0	genome.wustl.edu	37	chr11	94533105	94533105	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ggcgcataaggacgaggcgcTgaaggaactgaagcagggcc	17	9	0	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	94533105	94533105	T	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.749	p.L250Q	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	37	0	0	10	14	58.33	-	-	-	A	94533105	T	A	94533105	3	1	88	1	0	0	0	0	1	0	0	0	583	1580	55	5	759	5	AMOTL1	11	94533105	Missense_Mutation	SNP	T	TCGA-A2-A1G4-01A-11D-A13L-09	27537492	94533105	40473411	23	5779										
LRP1	0	genome.wustl.edu	37	chr12	57589072	57589072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	agaaggcaagacgtgcggccCctcctccttctcctgccctg	10	17	1	2			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	12	57589072	57589072	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.8327	p.P2776L	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	20	0	0	37	28	43.08	-	-	-	T	57589072	C	T	57589072	3	4	88	1	0	0	0	0	1	0	0	0	9017	623	22	4	8533	4	LRP1	12	57589072	Missense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09		57589072	76262823	24	5780										
CIDEB	0	genome.wustl.edu	37	chr14	24775709	24775710	+	Frame_Shift_Ins	INS	-	-	T													0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ccagggttagcactccattcINSagcagtagggtctccaatgc							TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775709	24775710	-	T	INS	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	frame_shift_ins	c.207_206	p.N70fs	0.974:1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	84	0	0	126	29	18.71	-	-	-	T	24775710	-	T	24775709	7	5	88	1	0	1	1	0	0	0	0	0	3455	813	29	0	464	0	CIDEB	14	24775709	Frame_Shift_Ins	INS	-	TCGA-A2-A1G4-01A-11D-A13L-09		24775709	82573831	25	5781	44	3								
CIDEB	0	genome.wustl.edu	37	chr14	24775714	24775714	+	Missense_Mutation	SNP	G	G	C													0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ggttagcactccattcagcaGtagggtctccaatgcctgcc							TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775714	24775714	G	C	SNP	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	missense	c.202	p.L68V	1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	89	0	0	121	27	18.24	-	-	-	C	24775714	G	C	24775714	3	2	88	1	0	0	0	0	1	0	0	0	3455	1020	36	4	469	4	CIDEB	14	24775714	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09	5	24775714	82573826	26	5782	44	3								
CIDEB	0	genome.wustl.edu	37	chr14	24775715	24775715	+	Silent	SNP	T	T	C													0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gttagcactccattcagcagTagggtctccaatgcctgccc							TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775715	24775715	T	C	SNP	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	silent	c.201	p.L67	1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	87	0	0	120	24	16.67	-	-	-	C	24775715	T	C	24775715	2	2	88	1	0	0	0	0	0	0	0	1	3455	1625	57	5		5	CIDEB	14	24775715	Silent	SNP	T	TCGA-A2-A1G4-01A-11D-A13L-09	1	24775715	82573825	27	5783	44	3								
SERPINA12	0	genome.wustl.edu	37	chr14	94964133	94964133	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tataatttgcaagaagcatcAcagtgccggggtctatattc	9	8	2	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	94964133	94964133	A	G	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	missense	c.602	p.V201A	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	75	0	0	60	36	37.5	-	-	-	G	94964133	A	G	94964133	3	3	88	1	0	0	0	0	1	0	0	0	14177	159	6	5	658	5	SERPINA12	14	94964133	Missense_Mutation	SNP	A	TCGA-A2-A1G4-01A-11D-A13L-09	70188418	94964133	12385407	28	5784										
USP8	0	genome.wustl.edu	37	chr15	50769138	50769138	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	tatccccagtatacaacaaaTgctaaggtcactccaccccc	4	16	1	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	50769138	50769138	T	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	silent	c.942	p.N314	1.000	superfamily_Rhodanese-like_dom	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	67	0	0	95	36	27.48	-	-	-	C	50769138	T	C	50769138	2	2	88	1	0	0	0	0	0	0	0	1	17186	1461	51	5		5	USP8	15	50769138	Silent	SNP	T	TCGA-A2-A1G4-01A-11D-A13L-09		50769138	51762254	29	5785										
MAP2K4	0	genome.wustl.edu	37	chr17	12016616	12016616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gctctgtgacttcggcatcaGtggacagcttgtggactcta	12	10	3	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	17	12016616	12016616	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.785	p.S262I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	67	0	0	18	30	62.5	-	-	-	T	12016616	G	T	12016616	3	4	88	1	0	0	0	0	1	0	0	0	9310	1029	36	4	778	4	MAP2K4	17	12016616	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09		12016616	69178594	30	5786										
VCX3B	0	genome.wustl.edu	37	chrX	8433833	8433833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gcagttcgtagagggagacgCgggaagaaaggggctgcgac	19	7	0	3			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	8433833	8433833	C	T	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	silent	c.150	p.R50	0.000	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	8	0	0	102	50	32.89	-	-	-	T	8433833	C	T	8433833	2	4	88	1	0	0	0	0	0	0	0	1	17242	755	27	1		1	VCX3B	23	8433833	Silent	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09		8433833	146836727	31	5787										
SH3BGRL	0	genome.wustl.edu	37	chrX	80552725	80552725	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	gcaagcaaagcagcaagcatGaaccttaagcactgtgcttt	9	10	0	1			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	80552725	80552725	G	A	SNP	SH3BGRL	ENST00000373212	human	ensembl	69_37n	1	known	silent	c.344	p.*115	0.982	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171	163	0	0	75	55	42.31	-	-	-	A	80552725	G	A	80552725	2	1	88	1	0	0	0	0	0	0	0	1	14329	1285	45	2		2	SH3BGRL	23	80552725	Silent	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09	72118892	80552725	74717835	32	5788										
BEX4	0	genome.wustl.edu	37	chrX	102471238	102471238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	ctggaggaaatatcaggcggGggcgagttaggcgacttgtc	17	7	1	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	102471238	102471238	G	A	SNP	BEX4	ENST00000372691	human	ensembl	69_37n	1	known	missense	c.157	p.G53R	0.000	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	BEX4	HGNC	ENSG00000102409	48	0	0	48	31	39.24	-	-	-	A	102471238	G	A	102471238	3	1	88	1	0	0	0	0	1	0	0	0	1417	1232	43	4	159	4	BEX4	23	102471238	Missense_Mutation	SNP	G	TCGA-A2-A1G4-01A-11D-A13L-09	21918513	102471238	52799322	33	5789										
ATP6AP1	0	genome.wustl.edu	37	chrX	153657488	153657488	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.15625	5	0.0894504192840861	2.96296296296296	0	3.17460317460317	0.00793650793650794	0.114145658263305	0	atcccgccctggagctgggtCccaggaatgtgctgctgttc	13	13	0	0			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	153657488	153657488	C	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	69_37n	1	known	missense	c.256	p.P86T	0.983	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	25	0	0	37	23	38.33	-	-	-	A	153657488	C	A	153657488	3	1	88	1	0	0	0	0	1	0	0	0	1169	855	30	2	262	2	ATP6AP1	23	153657488	Missense_Mutation	SNP	C	TCGA-A2-A1G4-01A-11D-A13L-09	51186250	153657488	1613072	34	5790										
PM20D1	0	genome.wustl.edu	37	chr1	205819079	205819079	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	1	0.613887543383297	3.33333333333333	6.66666666666667	0	1	1	0	gttcctctttgctgaactgaGaagggattcgcgacgccctt	11	11	1	2			TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	1	205819079	205819079	G	C	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	missense	c.122	p.S41C	0.373	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	46	0	0	65	9	12.16	-	-	-	C	205819079	G	C	205819079	3	2	89	1	0	0	0	0	1	0	0	0	12202	942	33	2	1438	2	PM20D1	1	205819079	Missense_Mutation	SNP	G	TCGA-A2-A1G6-01A-11D-A13L-09		205819079	43431542	1	5791										
AGAP7	0	genome.wustl.edu	37	chr10	51465920	51465920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	1	0.613887543383297	3.33333333333333	6.66666666666667	0	1	1	0	cacctccatttctgttcttcGtaatgtgcacggtggaaacc	8	12	2	0			TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	10	51465920	51465920	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.536	p.T179M	0.892	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	10	0	0	3	7	70	-	-	-	A	51465920	G	A	51465920	3	1	89	1	0	0	0	0	1	0	0	0	373	1145	40	1	1459	1	AGAP7	10	51465920	Missense_Mutation	SNP	G	TCGA-A2-A1G6-01A-11D-A13L-09		51465920	84068827	2	5792										
SLC38A10	0	genome.wustl.edu	37	chr17	79220335	79220335	+	Frame_Shift_Del	DEL	G	G	-													0.25	1	0.613887543383297	3.33333333333333	6.66666666666667	0	1	1	0	gctggttaaggtcctgggatGgagcagggcggcccccagga							TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	17	79220335	79220335	G	-	DEL	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	frame_shift_del	c.2381	p.P794fs	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	11	0	0	4	2	33.33	-	-	-	-	79220335	G	-	79220335	7	5	89	1	0	1	0	1	0	0	0	0	14691	1348	47	0	982	0	SLC38A10	17	79220335	Frame_Shift_Del	DEL	G	TCGA-A2-A1G6-01A-11D-A13L-09		79220335	1974875	3	5793										
R3HDML	0	genome.wustl.edu	37	chr20	42965985	42965985	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	1	0.613887543383297	3.33333333333333	6.66666666666667	0	1	1	0	ccacatctctgtgagagacaTgaatgccttactggattatc	8	10	1	3			TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	20	42965985	42965985	T	A	SNP	R3HDML	ENST00000217043	human	ensembl	69_37n	1	known	missense	c.188	p.M63K	1.000	superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074	19	0	0	24	5	17.24	-	-	-	A	42965985	T	A	42965985	3	1	89	1	0	0	0	0	1	0	0	0	12972	1464	51	5	190	5	R3HDML	20	42965985	Missense_Mutation	SNP	T	TCGA-A2-A1G6-01A-11D-A13L-09		42965985	20059535	4	5794										
SLC4A10	0	genome.wustl.edu	37	chr2	162815009	162815009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	ttttacagtttattcccatgCcagtgctatatggagtgttt	8	7	0	0			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	2	162815009	162815009	C	T	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	missense	c.2806	p.P936S	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	265	0	0	243	64	20.71	-	-	-	T	162815009	C	T	162815009	3	4	90	1	0	0	0	0	1	0	0	0	14740	739	26	4	2973	4	SLC4A10	2	162815009	Missense_Mutation	SNP	C	TCGA-A2-A259-01A-11D-A16D-09		162815009	80384364	1	5795										
OSBPL11	0	genome.wustl.edu	37	chr3	125297815	125297815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	tctacatacctttccaatagCttcagtatgatgctgtgtac	6	10	2	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	125297815	125297815	C	G	SNP	OSBPL11	ENST00000296220	human	ensembl	69_37n	-1	known	missense	c.478	p.A160P	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	93	0	0	82	21	20.39	-	-	-	G	125297815	C	G	125297815	3	3	90	1	0	0	0	0	1	0	0	0	11349	797	28	4	1805	4	OSBPL11	3	125297815	Missense_Mutation	SNP	C	TCGA-A2-A259-01A-11D-A16D-09		125297815	72724615	2	5796										
CEP70	0	genome.wustl.edu	37	chr3	138290122	138290122	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	aattacctttgagatctgttCttttgactagagacaaaggt	8	6	2	3			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	138290122	138290122	C	T	SNP	CEP70	ENST00000264982	human	ensembl	69_37n	-1	known	missense	c.146	p.R49K	0.700	NULL	pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CEP70	HGNC	ENSG00000114107	55	0	0	75	17	18.48	-	-	-	T	138290122	C	T	138290122	3	4	90	1	0	0	0	0	1	0	0	0	3288	913	32	2	1707	2	CEP70	3	138290122	Missense_Mutation	SNP	C	TCGA-A2-A259-01A-11D-A16D-09	12992307	138290122	59732308	3	5797										
MAP3K1	0	genome.wustl.edu	37	chr5	56184093	56184093	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	tggaaggagctgtgatgtatGgagtgttggctgtgctatta	16	3	0	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	5	56184093	56184093	G	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.4298	p.W1433S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	156	0	0	192	39	16.88	-	-	-	C	56184093	G	C	56184093	3	2	90	1	0	0	0	0	1	0	0	0	9314	1357	47	4	4372	4	MAP3K1	5	56184093	Missense_Mutation	SNP	G	TCGA-A2-A259-01A-11D-A16D-09		56184093	124731167	4	5798										
GPR110	0	genome.wustl.edu	37	chr6	46976736	46976736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	aagccagattctggctgtccActattgttcctattccaaag	7	11	1	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	6	46976736	46976736	A	C	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.2435	p.V812G	0.452	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	31	0	0	44	6	11.76	-	-	-	C	46976736	A	C	46976736	3	2	90	1	0	0	0	0	1	0	0	0	6677	159	6	5	317	5	GPR110	6	46976736	Missense_Mutation	SNP	A	TCGA-A2-A259-01A-11D-A16D-09		46976736	124138331	5	5799										
MLL3	0	genome.wustl.edu	37	chr7	152027750	152027750	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	ttcctcagacacagatcgctGaagagttggaattagctgtt	10	8	1	4			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	7	152027750	152027750	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.325	p.Q109*	0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	157	0	0	153	49	24.26	-	-	-	A	152027750	G	A	152027750	4	1	90	1	0	0	0	0	0	1	0	0	9693	1299	45	2	14638	2	MLL3	7	152027750	Nonsense_Mutation	SNP	G	TCGA-A2-A259-01A-11D-A16D-09		152027750	7110913	6	5800										
ZHX2	0	genome.wustl.edu	37	chr8	123964746	123964746	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	gtggaggaggcccggaagaaGatgttcaacggcaccatcca	14	10	1	2			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	8	123964746	123964746	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	silent	c.996	p.K332	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	25	0	0	19	37	66.07	-	-	-	A	123964746	G	A	123964746	2	1	90	1	0	0	0	0	0	0	0	1	17772	933	33	2		2	ZHX2	8	123964746	Silent	SNP	G	TCGA-A2-A259-01A-11D-A16D-09		123964746	22399276	7	5801										
WDR72	0	genome.wustl.edu	37	chr15	54025259	54025259	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	acttccagtcacaatcgttcGctggtcatcagtgatcatga	8	11	4	2			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	15	54025259	54025259	G	A	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	nonsense	c.88	p.R30*	0.928	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	32	0	0	59	16	21.33	-	-	-	A	54025259	G	A	54025259	4	1	90	1	0	0	0	0	0	1	0	0	17419	1095	38	1	3296	1	WDR72	15	54025259	Nonsense_Mutation	SNP	G	TCGA-A2-A259-01A-11D-A16D-09		54025259	48506133	8	5802										
ILF3	0	genome.wustl.edu	37	chr19	10781834	10781834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	cagcgagcaggcagagtccgAtaacatggatgtgcccccag	13	12	0	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	10781834	10781834	A	G	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	missense	c.188	p.D63G	0.137	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	31	0	0	55	16	22.54	-	-	-	G	10781834	A	G	10781834	3	3	90	1	0	0	0	0	1	0	0	0	7766	333	12	5	194	5	ILF3	19	10781834	Missense_Mutation	SNP	A	TCGA-A2-A259-01A-11D-A16D-09		10781834	48347149	9	5803										
RPS5	0	genome.wustl.edu	37	chr19	58904526	58904526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	gcatcgtcaagcatgccttcGagatcatacacctgctcaca	7	14	3	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	58904526	58904526	G	A	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.292	p.E98K	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	42	0	0	41	10	19.61	-	-	-	A	58904526	G	A	58904526	3	1	90	1	0	0	0	0	1	0	0	0	13734	1059	37	1	298	1	RPS5	19	58904526	Missense_Mutation	SNP	G	TCGA-A2-A259-01A-11D-A16D-09	48122692	58904526	224457	10	5804										
AFF2	0	genome.wustl.edu	37	chrX	148039966	148039966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	gcatctcaccagccccacccCacaagcctcccaacactaga	4	21	1	1			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	148039966	148039966	C	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.2668	p.H890Y	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	84	0	0	102	29	22.14	-	-	-	T	148039966	C	T	148039966	3	4	90	1	0	0	0	0	1	0	0	0	357	594	21	4	2769	4	AFF2	23	148039966	Missense_Mutation	SNP	C	TCGA-A2-A259-01A-11D-A16D-09		148039966	7230594	11	5805										
PLXNA3	0	genome.wustl.edu	37	chrX	153696522	153696522	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.344894097038568	2.45454545454545	0	3.15584415584416	0.1	0.5224358974359	0	cggacttacgccgtgcgcgtGctcttcccgggcatcgaggc	14	15	1	0			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	153696522	153696522	G	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.3918	p.V1306	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	39	0	0	22	6	21.43	-	-	-	T	153696522	G	T	153696522	2	4	90	1	0	0	0	0	0	0	0	1	12195	1306	46	4		4	PLXNA3	23	153696522	Silent	SNP	G	TCGA-A2-A259-01A-11D-A16D-09	5656556	153696522	1574038	12	5806										
PEX14	0	genome.wustl.edu	37	chr1	10596278	10596278	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctctctcaccagattgccacGgcagtgaagtttctacagaa	8	12	3	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	10596278	10596278	G	T	SNP	PEX14	ENST00000356607	human	ensembl	69_37n	1	known	silent	c.93	p.T31	0.895	pfam_Pex14_N	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655	50	0	0	84	14	14.29	-	-	-	T	10596278	G	T	10596278	2	4	91	1	0	0	0	0	0	0	0	1	11816	1103	39	3		3	PEX14	1	10596278	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		10596278	238654343	1	5807										
HPCAL4	0	genome.wustl.edu	37	chr1	40150207	40150207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cactgcttcagctcctgctcGctgaactcagtgttctgaac	8	14	3	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	40150207	40150207	G	T	SNP	HPCAL4	ENST00000372844	human	ensembl	69_37n	-1	known	missense	c.69	p.S23R	1.000	prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983	25	0	0	45	13	22.41	-	-	-	T	40150207	G	T	40150207	3	4	91	1	0	0	0	0	1	0	0	0	7382	1078	38	3	518	3	HPCAL4	1	40150207	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	29553929	40150207	209100414	2	5808										
ERI3	0	genome.wustl.edu	37	chr1	44750563	44750563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cactggcaagcccaagtactGgcactggcctgggagcctac	12	14	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	44750563	44750563	G	T	SNP	ERI3	ENST00000372257	human	ensembl	69_37n	-1	known	missense	c.775	p.Q259K	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI3	HGNC	ENSG00000117419	51	0	0	95	13	12.04	-	-	-	T	44750563	G	T	44750563	3	4	91	1	0	0	0	0	1	0	0	0	5266	1357	47	4	250	4	ERI3	1	44750563	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	4600356	44750563	204500058	3	5809										
ASH1L	0	genome.wustl.edu	37	chr1	155429604	155429604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tagcctgttgaagaagtactCtcagatgaagaccttttccg	9	9	1	5			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	155429604	155429604	C	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.5070	p.E1690D	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	66	0	0	223	31	12.2	-	-	-	G	155429604	C	G	155429604	3	3	91	1	0	0	0	0	1	0	0	0	1045	912	32	2	3924	2	ASH1L	1	155429604	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	110679041	155429604	93821017	4	5810										
SELP	0	genome.wustl.edu	37	chr1	169565174	169565174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tcaccttacctctgcatgctGgagttactgctgtccattgt	8	12	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	169565174	169565174	G	T	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.2090	p.P697Q	0.108	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	50	0	0	126	18	12.5	-	-	-	T	169565174	G	T	169565174	3	4	91	1	0	0	0	0	1	0	0	0	14107	1348	47	4	422	4	SELP	1	169565174	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	14135570	169565174	79685447	5	5811										
ASPM	0	genome.wustl.edu	37	chr1	197099176	197099176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cttccaaagatatgagttctCcataagttgtctgaaaataa	6	7	2	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	197099176	197099176	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.2498	p.G833E	1.000	superfamily_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	42	0	0	114	13	10.24	-	-	-	T	197099176	C	T	197099176	3	4	91	1	0	0	0	0	1	0	0	0	1060	855	30	2	8019	2	ASPM	1	197099176	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	27534002	197099176	52151445	6	5812										
LAMB3	0	genome.wustl.edu	37	chr1	209791254	209791254	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gaagccataatgcctcacctCagcaaccctgtcctggataa	7	14	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	209791254	209791254	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.3049	p.E1017K	0.996	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	37	0	0	78	19	19.59	-	-	-	T	209791254	C	T	209791254	3	4	91	1	0	0	0	0	1	0	0	0	8666	835	29	2	485	2	LAMB3	1	209791254	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	12692078	209791254	39459367	7	5813										
MARK1	0	genome.wustl.edu	37	chr1	220825486	220825486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agacggctctgaagcttaccGgcctgggtaatgtgttggtt	14	8	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	220825486	220825486	G	T	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.1730	p.R577L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	67	0	0	143	19	11.73	-	-	-	T	220825486	G	T	220825486	3	4	91	1	0	0	0	0	1	0	0	0	9383	1116	39	3	1788	3	MARK1	1	220825486	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	11034232	220825486	28425135	8	5814										
CDC42BPA	0	genome.wustl.edu	37	chr1	227288919	227288919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttctatgctgcatactcctgGtgagtaactaatttgttttt	7	7	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	1	227288919	227288919	G	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.2023	p.P675T	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	76	0	0	162	28	14.74	-	-	-	T	227288919	G	T	227288919	3	4	91	1	0	0	0	0	1	0	0	0	3101	1261	44	4	3224	4	CDC42BPA	1	227288919	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	6463433	227288919	21961702	9	5815										
RRM2	0	genome.wustl.edu	37	chr2	10269209	10269209	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cctgtgaagctcattgggatGaattgcactctaatgaagca	10	8	2	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	2	10269209	10269209	G	A	SNP	RRM2	ENST00000360566	human	ensembl	69_37n	1	known	missense	c.1125	p.M375I	1.000	pfam_Ribonucl_Rdtase_small,superfamily_Ferritin/RR-like	pfam_Ribonucl_Rdtase_small,superfamily_Ferritin/RR-like	-	no_errors	RRM2	HGNC	ENSG00000171848	105	0	0	240	30	11.11	-	-	-	A	10269209	G	A	10269209	3	1	91	1	0	0	0	0	1	0	0	0	13768	1290	45	2	1159	2	RRM2	2	10269209	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		10269209	232930164	10	5816										
ASXL2	0	genome.wustl.edu	37	chr2	25978922	25978922	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ccttccagccttgggctgctGaagtgaagaattcattgtta	10	9	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	2	25978922	25978922	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1001	p.S334L	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	33	0	0	65	13	16.67	-	-	-	A	25978922	G	A	25978922	3	1	91	1	0	0	0	0	1	0	0	0	1071	1294	45	2	3322	2	ASXL2	2	25978922	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	15709713	25978922	217220451	11	5817										
HS6ST1	0	genome.wustl.edu	37	chr2	129026227	129026227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggccagcatgcgcacctggcGgttgttggccaggttgtacg	16	11	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	2	129026227	129026227	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.745	p.R249S	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	21	0	0	16	6	27.27	-	-	-	T	129026227	G	T	129026227	3	4	91	1	0	0	0	0	1	0	0	0	7421	1116	39	3	494	3	HS6ST1	2	129026227	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	103047305	129026227	114173146	12	5818										
USP40	0	genome.wustl.edu	37	chr2	234429703	234429703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aactggcataaatttttaacGtggagccagtcaatctcatt	7	8	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	2	234429703	234429703	G	T	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	missense	c.2292	p.H764Q	0.930	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC	ENSG00000085982	120	0	0	191	22	10.33	-	-	-	T	234429703	G	T	234429703	3	4	91	1	0	0	0	0	1	0	0	0	17169	1136	40	3	1515	3	USP40	2	234429703	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	105403476	234429703	8769670	13	5819										
HDAC4	0	genome.wustl.edu	37	chr2	240016733	240016733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ccaccgcaagggagccggacGaacacggaggcgagcgagcc	16	14	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	2	240016733	240016733	G	T	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	missense	c.2238	p.F746L	0.191	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	27	0	0	12	6	33.33	-	-	-	T	240016733	G	T	240016733	3	4	91	1	0	0	0	0	1	0	0	0	7060	1049	37	3	1060	3	HDAC4	2	240016733	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	5587030	240016733	3182640	14	5820										
HHATL	0	genome.wustl.edu	37	chr3	42740389	42740389	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tacacagcatacatccaggaGcggagctgtgggcagggaga	15	9	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	42740389	42740389	G	T	SNP	HHATL	ENST00000310417	human	ensembl	69_37n	-1	known	silent	c.294	p.R98	1.000	NULL	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282	31	0	0	32	7	17.95	-	-	-	T	42740389	G	T	42740389	2	4	91	1	0	0	0	0	0	0	0	1	7141	958	34	4		4	HHATL	3	42740389	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		42740389	155282041	15	5821										
DOCK3	0	genome.wustl.edu	37	chr3	51417596	51417596	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gacgccttccaccaccctctGggtgatacccccccagccct	7	21	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	51417596	51417596	G	T	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	silent	c.5541	p.L1847	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	70	0	0	66	14	17.5	-	-	-	T	51417596	G	T	51417596	2	4	91	1	0	0	0	0	0	0	0	1	4723	1335	47	4		4	DOCK3	3	51417596	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	8677207	51417596	146604834	16	5822										
TEX264	0	genome.wustl.edu	37	chr3	51718482	51718482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agcatcctgagtgaaggtgaGgaatcgccctcccctgagct	12	12	0	4			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	51718482	51718482	G	T	SNP	TEX264	ENST00000341333	human	ensembl	69_37n	1	known	missense	c.312	p.E104D	0.959	superfamily_Reg_factor_effector_bac	superfamily_Reg_factor_effector_bac	-	no_errors	TEX264	HGNC	ENSG00000164081	36	0	0	36	6	14.29	-	-	-	T	51718482	G	T	51718482	3	4	91	1	0	0	0	0	1	0	0	0	15878	991	35	4	318	4	TEX264	3	51718482	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	300886	51718482	146303948	17	5823										
ACTR8	0	genome.wustl.edu	37	chr3	53908306	53908306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	atccattttatttgttaactGgcattctctgtaagggaacc	7	8	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	53908306	53908306	G	T	SNP	ACTR8	ENST00000335754	human	ensembl	69_37n	-1	known	missense	c.997	p.Q333K	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR8	HGNC	ENSG00000113812	44	0	0	95	11	10.38	-	-	-	T	53908306	G	T	53908306	3	4	91	1	0	0	0	0	1	0	0	0	217	1357	47	4	901	4	ACTR8	3	53908306	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	2189824	53908306	144114124	18	5824										
ARGFX	0	genome.wustl.edu	37	chr3	121305394	121305394	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttgaagcctacagtctaacaGatagcctggaattccagaaa	8	9	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	121305394	121305394	G	C	SNP	ARGFX	ENST00000334384	human	ensembl	69_37n	1	known	missense	c.895	p.D299H	0.003	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ARGFX	HGNC	ENSG00000186103	35	0	0	51	6	10.53	-	-	-	C	121305394	G	C	121305394	3	2	91	1	0	0	0	0	1	0	0	0	861	942	33	2	909	2	ARGFX	3	121305394	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	67397088	121305394	76717036	19	5825										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	67	0	0	115	23	16.67	-	-	-	A	178936082	G	A	178936082	3	1	91	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	57630688	178936082	19086348	20	5826										
SORCS2	0	genome.wustl.edu	37	chr4	7714483	7714483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctttggccacatcagcttccGctccgattgggagctggtca	11	13	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	4	7714483	7714483	G	T	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	1	known	missense	c.1892	p.R631L	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	34	0	0	32	4	11.11	-	-	-	T	7714483	G	T	7714483	3	4	91	1	0	0	0	0	1	0	0	0	15020	1087	38	3	1950	3	SORCS2	4	7714483	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		7714483	183439793	21	5827										
ADAMTS3	0	genome.wustl.edu	37	chr4	73148964	73148964	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	attgaatcactggctgcaaaGaaggaagcagcagccatttg	11	8	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	4	73148964	73148964	G	T	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.3507	p.F1169L	0.105	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	53	0	0	148	20	11.83	-	-	-	T	73148964	G	T	73148964	3	4	91	1	0	0	0	0	1	0	0	0	267	933	33	2	114	2	ADAMTS3	4	73148964	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	65434481	73148964	118005312	22	5828										
MANBA	0	genome.wustl.edu	37	chr4	103578858	103578858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ccttttctaatgtactgaagGacggccaggactgatatcca	9	10	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	4	103578858	103578858	G	T	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	missense	c.1685	p.S562Y	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	30	0	0	78	10	11.36	-	-	-	T	103578858	G	T	103578858	3	4	91	1	0	0	0	0	1	0	0	0	9290	1174	41	2	978	2	MANBA	4	103578858	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	30429894	103578858	87575418	23	5829										
RAPGEF2	0	genome.wustl.edu	37	chr4	160235812	160235812	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cagcagtggattccgaagacGacgacgatgaagaagacatt	12	8	0	4			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	4	160235812	160235812	G	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	missense	c.262	p.D88Y	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	69	0	0	79	12	13.19	-	-	-	T	160235812	G	T	160235812	3	4	91	1	0	0	0	0	1	0	0	0	13127	1058	37	3	272	3	RAPGEF2	4	160235812	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	56656954	160235812	30918464	24	5830										
OSMR	0	genome.wustl.edu	37	chr5	38933388	38933388	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tggcttcacccatgtttggaGacaaggacagtctcccaaca	9	12	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	5	38933388	38933388	G	T	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	missense	c.2782	p.D928Y	0.937	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	34	0	0	61	15	19.74	-	-	-	T	38933388	G	T	38933388	3	4	91	1	0	0	0	0	1	0	0	0	11365	942	33	2	2886	2	OSMR	5	38933388	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		38933388	141981872	25	5831										
SPOCK1	0	genome.wustl.edu	37	chr5	136328289	136328289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gcaactccttgtctgtgcagGctagagaaaagcaaacagaa	10	9	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	5	136328289	136328289	G	T	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	missense	c.590	p.A197D	0.998	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	44	0	0	80	13	13.98	-	-	-	T	136328289	G	T	136328289	3	4	91	1	0	0	0	0	1	0	0	0	15170	1217	42	4	749	4	SPOCK1	5	136328289	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	97394901	136328289	44586971	26	5832										
BRD8	0	genome.wustl.edu	37	chr5	137503631	137503631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gtggtaacttacctgatgcaGcaggggaggctgcaacagta	14	8	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	5	137503631	137503631	G	T	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	missense	c.779	p.A260D	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	32	0	0	45	9	16.67	-	-	-	T	137503631	G	T	137503631	3	4	91	1	0	0	0	0	1	0	0	0	1514	971	34	4	3068	4	BRD8	5	137503631	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	1175342	137503631	43411629	27	5833										
PCDH1	0	genome.wustl.edu	37	chr5	141244076	141244076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gcataaatttggggtcattgTcattgcagtccagcacattg	10	8	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	5	141244076	141244076	T	C	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	missense	c.1820	p.D607G	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	33	0	0	54	14	20.59	-	-	-	C	141244076	T	C	141244076	3	2	91	1	0	0	0	0	1	0	0	0	11579	1667	58	5	1989	5	PCDH1	5	141244076	Missense_Mutation	SNP	T	TCGA-A2-A25A-01A-12D-A16D-09	3740445	141244076	39671184	28	5834										
DCDC2	0	genome.wustl.edu	37	chr6	24174967	24174967	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttaaaaatgttctaagccacGgcagcatagtccttgttttg	8	8	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	24174967	24174967	G	T	SNP	DCDC2	ENST00000378454	human	ensembl	69_37n	-1	known	silent	c.1422	p.A474	0.001	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2	HGNC	ENSG00000146038	114	0	0	268	33	10.96	-	-	-	T	24174967	G	T	24174967	2	4	91	1	0	0	0	0	0	0	0	1	4316	1103	39	3		3	DCDC2	6	24174967	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		24174967	146940100	29	5835										
HCRTR2	0	genome.wustl.edu	37	chr6	55147109	55147109	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aggatcggctcaccaggggaCgaactagcacagagagccgg	15	11	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	55147109	55147109	C	T	SNP	HCRTR2	ENST00000370862	human	ensembl	69_37n	1	known	nonsense	c.1192	p.R398*	0.180	pfam_Orexin_rcpt_2,prints_Orexin_rcpt_2	pfam_7TM_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252	37	0	0	61	22	26.51	-	-	-	T	55147109	C	T	55147109	4	4	91	1	0	0	0	0	0	1	0	0	7053	528	19	1	1218	1	HCRTR2	6	55147109	Nonsense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	30972142	55147109	115967958	30	5836										
KHDRBS2	0	genome.wustl.edu	37	chr6	62604590	62604590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aggaggtgccctgtatcctgGcactgttggtgccccccggg	15	13	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	62604590	62604590	G	T	SNP	KHDRBS2	ENST00000281156	human	ensembl	69_37n	-1	known	missense	c.760	p.P254T	0.998	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232	55	0	0	59	8	11.94	-	-	-	T	62604590	G	T	62604590	3	4	91	1	0	0	0	0	1	0	0	0	8199	1203	42	4	305	4	KHDRBS2	6	62604590	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	7457481	62604590	108510477	31	5837										
FHL5	0	genome.wustl.edu	37	chr6	97058632	97058632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agcctgttccaaacccattaGtggtgagttcttcagttcaa	8	10	3	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	97058632	97058632	G	T	SNP	FHL5	ENST00000326771	human	ensembl	69_37n	1	known	missense	c.689	p.S230I	0.921	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214	61	0	0	68	8	10.53	-	-	-	T	97058632	G	T	97058632	3	4	91	1	0	0	0	0	1	0	0	0	5927	1029	36	4	703	4	FHL5	6	97058632	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	34454042	97058632	74056435	32	5838										
CDC40	0	genome.wustl.edu	37	chr6	110534290	110534290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctgtaatacctttttataggGcgtcagtgcagtcagattgt	10	7	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	110534290	110534290	G	T	SNP	CDC40	ENST00000307731	human	ensembl	69_37n	1	known	missense	c.869	p.G290V	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	99	0	0	151	29	16.11	-	-	-	T	110534290	G	T	110534290	3	4	91	1	0	0	0	0	1	0	0	0	3099	1217	42	4	899	4	CDC40	6	110534290	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	13475658	110534290	60580777	33	5839										
ASF1A	0	genome.wustl.edu	37	chr6	119226836	119226836	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggctgatgcacctaatccagGactcattccagatgcagatg	10	11	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	119226836	119226836	G	T	SNP	ASF1A	ENST00000229595	human	ensembl	69_37n	1	known	missense	c.245	p.G82V	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875	47	0	0	97	12	11.01	-	-	-	T	119226836	G	T	119226836	3	4	91	1	0	0	0	0	1	0	0	0	1041	1174	41	2	142	2	ASF1A	6	119226836	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	8692546	119226836	51888231	34	5840										
PTPRK	0	genome.wustl.edu	37	chr6	128294905	128294905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agaatgaccttttggatccaGgcacttctcgatgagaagcc	10	10	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	128294905	128294905	G	T	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	missense	c.4088	p.P1363H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	38	0	0	61	8	11.59	-	-	-	T	128294905	G	T	128294905	3	4	91	1	0	0	0	0	1	0	0	0	12888	1000	35	4	297	4	PTPRK	6	128294905	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	9068069	128294905	42820162	35	5841										
MAP3K4	0	genome.wustl.edu	37	chr6	161470388	161470388	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aacggataatggagctgctaGagtacatagaagcactttat	10	6	0	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	161470388	161470388	G	T	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	nonsense	c.1084	p.E362*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	46	0	0	72	12	14.29	-	-	-	T	161470388	G	T	161470388	4	4	91	1	0	0	0	0	0	1	0	0	9323	943	33	2	1094	2	MAP3K4	6	161470388	Nonsense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	33175483	161470388	9644679	36	5842										
AGPAT4	0	genome.wustl.edu	37	chr6	161570318	161570318	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gtgtacagtcatatacagctGaaactataaaaaataaaaca	5	6	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	6	161570318	161570318	G	A	SNP	AGPAT4	ENST00000437165	human	ensembl	69_37n	-1	known	nonsense	c.4	p.Q2*	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AGPAT4	HGNC	ENSG00000026652	62	0	0	96	23	19.33	-	-	-	A	161570318	G	A	161570318	4	1	91	1	0	0	0	0	0	1	0	0	389	1294	45	2	484	2	AGPAT4	6	161570318	Nonsense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	99930	161570318	9544749	37	5843										
OR6B1	0	genome.wustl.edu	37	chr7	143701740	143701740	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctctttattactgtcctgtcCtacggatgcattctggccac	7	13	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	7	143701740	143701740	C	G	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	silent	c.651	p.S217	0.976	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	62	0	0	165	24	12.7	-	-	-	G	143701740	C	G	143701740	2	3	91	1	0	0	0	0	0	0	0	1	11260	668	24	4		4	OR6B1	7	143701740	Silent	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09		143701740	15436923	38	5844										
KIAA1967	0	genome.wustl.edu	37	chr8	22464825	22464825	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cctcaccggattcccccactCtttcctcagaagcgtgagta	7	16	3	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	8	22464825	22464825	C	G	SNP	KIAA1967	ENST00000523801	human	ensembl	69_37n	1	putative	missense	c.496	p.L166V	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_start_codon:pseudogene:no_stop_codon	KIAA1967	HGNC	ENSG00000158941	49	0	0	98	19	16.24	-	-	-	G	22464825	C	G	22464825	3	3	91	1	0	0	0	0	1	0	0	0	8317	900	32	2	492	2	KIAA1967	8	22464825	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09		22464825	123899197	39	5845										
ZFHX4	0	genome.wustl.edu	37	chr8	77765961	77765961	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gttctcaatctgcctacccgGgttattgttgtatggttcca	9	10	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	8	77765961	77765961	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.6804	p.R2268	0.997	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	65	0	0	112	20	15.15	-	-	-	T	77765961	G	T	77765961	2	4	91	1	0	0	0	0	0	0	0	1	17731	1219	43	4		4	ZFHX4	8	77765961	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	55301136	77765961	68598061	40	5846										
TMEM67	0	genome.wustl.edu	37	chr8	94770765	94770765	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cttgccctagtgacttaactGccgaaggaaaatgtcactgt	9	10	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	8	94770765	94770765	G	T	SNP	TMEM67	ENST00000453321	human	ensembl	69_37n	1	known	missense	c.367	p.A123S	1.000	superfamily_Growth_fac_rcpt	pfam_Meckelin,superfamily_Growth_fac_rcpt	-	no_errors	TMEM67	HGNC	ENSG00000164953	58	0	0	91	13	12.5	-	-	-	T	94770765	G	T	94770765	3	4	91	1	0	0	0	0	1	0	0	0	16291	1319	46	4	377	4	TMEM67	8	94770765	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	17004804	94770765	51593257	41	5847										
WDR67	0	genome.wustl.edu	37	chr8	124154635	124154635	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggaagtagccaaactccttaGggaaaacagaaggaaagaaa	11	6	0	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	8	124154635	124154635	G	T	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.2774	p.R925M	0.073	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	54	0	0	51	9	15	-	-	-	T	124154635	G	T	124154635	3	4	91	1	0	0	0	0	1	0	0	0	17415	1000	35	4	2848	4	WDR67	8	124154635	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	29383870	124154635	22209387	42	5848										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123171418	123171418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ccactacctgctcagctcctGgccgctgcagcggacctcct	9	19	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	9	123171418	123171418	G	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.4591	p.Q1531K	0.003	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	69	0	0	116	13	10.08	-	-	-	T	123171418	G	T	123171418	3	4	91	1	0	0	0	0	1	0	0	0	3175	1357	47	4	1126	4	CDK5RAP2	9	123171418	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		123171418	18042013	43	5849										
RBM18	0	genome.wustl.edu	37	chr9	125023778	125023778	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gtttctgcttccatcaatgtCtatgaaatactaaaggaaat	6	7	3	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	9	125023778	125023778	C	T	SNP	RBM18	ENST00000483428	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBM18	HGNC	ENSG00000119446	70	0	0	102	19	15.7	-	-	-	T	125023778	C	T	125023778	1	4	91	0	1	0	0	0	0	0	0	0	13203	928	32	2		2	RBM18	9	125023778	RNA	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	1852360	125023778	16189653	44	5850										
C9orf50	0	genome.wustl.edu	37	chr9	132381848	132381848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tgagtgatcacccttcagggGccccagaataggtgtctgct	12	11	3	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	9	132381848	132381848	G	T	SNP	C9orf50	ENST00000372478	human	ensembl	69_37n	-1	known	missense	c.667	p.P223T	0.000	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058	65	0	0	115	13	10.16	-	-	-	T	132381848	G	T	132381848	3	4	91	1	0	0	0	0	1	0	0	0	2512	1203	42	4	648	4	C9orf50	9	132381848	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	7358070	132381848	8831583	45	5851										
C9orf37	0	genome.wustl.edu	37	chr9	140510463	140510463	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gaaggctctgggttcaaattCcagttctcctttagggcgaa	11	9	3	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	9	140510463	140510463	C	T	SNP	C9orf37	ENST00000371417	human	ensembl	69_37n	-1	known	nonsense	c.189	p.W63*	0.268	NULL	NULL	-	no_errors	C9orf37	HGNC	ENSG00000203993	46	0	0	90	13	12.62	-	-	-	T	140510463	C	T	140510463	4	4	91	1	0	0	0	0	0	1	0	0	2504	856	30	2	345	2	C9orf37	9	140510463	Nonsense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	8128615	140510463	702968	46	5852										
OGDHL	0	genome.wustl.edu	37	chr10	50954843	50954843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	accattggtcgtgtaggaggGcaggtcgctcaggtggaagg	18	7	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	50954843	50954843	G	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.1249	p.P417T	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	40	0	0	64	9	12.33	-	-	-	T	50954843	G	T	50954843	3	4	91	1	0	0	0	0	1	0	0	0	10913	1203	42	4	1839	4	OGDHL	10	50954843	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		50954843	84579904	47	5853										
CCAR1	0	genome.wustl.edu	37	chr10	70520826	70520826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tccaaaggattaaaatcccaGttaatagcccgattgacaaa	6	9	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	70520826	70520826	G	T	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.1983	p.Q661H	1.000	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	45	0	0	44	6	12	-	-	-	T	70520826	G	T	70520826	3	4	91	1	0	0	0	0	1	0	0	0	2755	1020	36	4	2041	4	CCAR1	10	70520826	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	19565983	70520826	65013921	48	5854										
CYP26A1	0	genome.wustl.edu	37	chr10	94836960	94836960	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agctggccaggcattgtgacTggcagcttctaaatggacct	12	10	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	94836960	94836960	T	A	SNP	CYP26A1	ENST00000224356	human	ensembl	69_37n	1	known	missense	c.1393	p.W465R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596	20	0	0	39	7	15.22	-	-	-	A	94836960	T	A	94836960	3	1	91	1	0	0	0	0	1	0	0	0	4186	1580	55	5	1419	5	CYP26A1	10	94836960	Missense_Mutation	SNP	T	TCGA-A2-A25A-01A-12D-A16D-09	24316134	94836960	40697787	49	5855										
ABCC2	0	genome.wustl.edu	37	chr10	101601847	101601847	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tttgttctgtccaatgcactCaatgtgagtttgaaggttgg	11	6	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	101601847	101601847	C	G	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	silent	c.3738	p.L1246	0.996	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	117	0	0	275	58	17.42	-	-	-	G	101601847	C	G	101601847	2	3	91	1	0	0	0	0	0	0	0	1	53	813	29	2		2	ABCC2	10	101601847	Silent	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	6764887	101601847	33932900	50	5856										
DNMBP	0	genome.wustl.edu	37	chr10	101637038	101637038	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tcttgagtttctgattggctGacacgctcagctcatttggg	11	9	4	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	101637038	101637038	G	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	nonsense	c.4676	p.S1559*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	70	0	0	207	27	11.54	-	-	-	T	101637038	G	T	101637038	4	4	91	1	0	0	0	0	0	1	0	0	4709	1294	45	2	133	2	DNMBP	10	101637038	Nonsense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	35191	101637038	33897709	51	5857										
C10orf76	0	genome.wustl.edu	37	chr10	103771512	103771512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agcagagaaaaaaccactttGgtgttcttcttccttgtctt	7	9	3	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	10	103771512	103771512	G	T	SNP	C10orf76	ENST00000370033	human	ensembl	69_37n	-1	known	missense	c.799	p.Q267K	1.000	superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	90	0	0	114	31	21.38	-	-	-	T	103771512	G	T	103771512	3	4	91	1	0	0	0	0	1	0	0	0	1626	1357	47	4	1334	4	C10orf76	10	103771512	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	2134474	103771512	31763235	52	5858										
B4GALNT4	0	genome.wustl.edu	37	chr11	380848	380848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	actgggaggtgaacggctttGgcctttttgggatctacaag	14	7	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	380848	380848	G	T	SNP	B4GALNT4	ENST00000329962	human	ensembl	69_37n	1	known	missense	c.2893	p.G965C	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	36	0	0	59	8	11.94	-	-	-	T	380848	G	T	380848	3	4	91	1	0	0	0	0	1	0	0	0	1273	1348	47	4	2967	4	B4GALNT4	11	380848	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		380848	134625668	53	5859										
DNHD1	0	genome.wustl.edu	37	chr11	6570103	6570103	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ccagcccacagcctgggcatCaccaggattctaaaccctcc	7	18	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	6570103	6570103	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.7327	p.H2443Y	0.001	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	30	0	0	53	8	13.11	-	-	-	T	6570103	C	T	6570103	3	4	91	1	0	0	0	0	1	0	0	0	4703	826	29	2	7422	2	DNHD1	11	6570103	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	6189255	6570103	128436413	54	5860										
OR5L2	0	genome.wustl.edu	37	chr11	55595570	55595570	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aaccccctgatctacagcctGagaaataaggatgtgaacaa	8	10	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	55595570	55595570	G	A	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	silent	c.876	p.L292	0.994	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	17	0	0	47	10	17.54	-	-	-	A	55595570	G	A	55595570	2	1	91	1	0	0	0	0	0	0	0	1	11244	1277	45	2		2	OR5L2	11	55595570	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	49025467	55595570	79410946	55	5861										
OR8K1	0	genome.wustl.edu	37	chr11	56113597	56113597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggggattacagacaaccctgGgctgcaggctccactgtttg	13	11	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	56113597	56113597	G	A	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.83	p.G28E	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	50	0	0	101	13	11.3	-	-	-	A	56113597	G	A	56113597	3	1	91	1	0	0	0	0	1	0	0	0	11316	1232	43	4	85	4	OR8K1	11	56113597	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	518027	56113597	78892919	56	5862										
MCAM	0	genome.wustl.edu	37	chr11	119182249	119182249	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cacccgctcaccgtgccgttGacgttccaggagatggtggg	14	13	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	119182249	119182249	G	T	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	silent	c.1398	p.V466	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	49	0	0	54	9	14.29	-	-	-	T	119182249	G	T	119182249	2	4	91	1	0	0	0	0	0	0	0	1	9439	1277	45	2		2	MCAM	11	119182249	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	63068652	119182249	15824267	57	5863										
OR8B3	0	genome.wustl.edu	37	chr11	124266647	124266647	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gatattaatacccacaacaaTgagaacaaccacctcgttga	5	11	0	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	11	124266647	124266647	T	C	SNP	OR8B3	ENST00000354597	human	ensembl	69_37n	-1	known	missense	c.601	p.I201V	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B3	HGNC	ENSG00000196661	30	0	0	86	19	18.1	-	-	-	C	124266647	T	C	124266647	3	2	91	1	0	0	0	0	1	0	0	0	11301	1464	51	5	342	5	OR8B3	11	124266647	Missense_Mutation	SNP	T	TCGA-A2-A25A-01A-12D-A16D-09	5084398	124266647	10739869	58	5864										
KRT76	0	genome.wustl.edu	37	chr12	53164973	53164973	+	Frame_Shift_Del	DEL	C	C	-													0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	catctctccacgctgctcagCctctgcaattgccgtctgca							TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	12	53164973	53164973	C	-	DEL	KRT76	ENST00000332411	human	ensembl	69_37n	-1	known	frame_shift_del	c.1294	p.A432fs	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	60	0	0	130	37	21.89	-	-	-	-	53164973	C	-	53164973	7	5	91	1	0	1	0	1	0	0	0	0	8542	739	26	0	634	0	KRT76	12	53164973	Frame_Shift_Del	DEL	C	TCGA-A2-A25A-01A-12D-A16D-09		53164973	80686922	59	5865										
OR6C76	0	genome.wustl.edu	37	chr12	55820958	55820959	+	Frame_Shift_Ins	INS	-	-	A													0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttctgagaaagatttcccacINSaaaaaaaaaaaacactgatt							TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	12	55820958	55820959	-	A	INS	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	frame_shift_ins	c.921_922	p.K311fs	0.003:0.016	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	9	0	0	22	8	26.67	-	-	-	A	55820959	-	A	55820958	7	5	91	1	0	1	1	0	0	0	0	0	11273	477	17	0	923	0	OR6C76	12	55820958	Frame_Shift_Ins	INS	-	TCGA-A2-A25A-01A-12D-A16D-09	2655985	55820958	78030937	60	5866										
KIF5A	0	genome.wustl.edu	37	chr12	57975311	57975311	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tcttccagaactaccagaatCtctacctgcaggccacaccc	5	17	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	12	57975311	57975311	C	G	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	missense	c.2869	p.L957V	0.354	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	36	0	0	56	14	20	-	-	-	G	57975311	C	G	57975311	3	3	91	1	0	0	0	0	1	0	0	0	8357	913	32	2	2967	2	KIF5A	12	57975311	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	2154353	57975311	75876584	61	5867										
ATP2B1	0	genome.wustl.edu	37	chr12	90010583	90010583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cagaatgtttcaccacctcaGgtctcacaggatcttcaatc	6	13	5	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	12	90010583	90010583	G	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.2063	p.P688H	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	51	0	0	103	12	10.43	-	-	-	T	90010583	G	T	90010583	3	4	91	1	0	0	0	0	1	0	0	0	1143	1000	35	4	1797	4	ATP2B1	12	90010583	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	32035272	90010583	43841312	62	5868										
DNAH10	0	genome.wustl.edu	37	chr12	124298415	124298415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tcatggaactcagatataggGacgtccaggagcgataccgt	12	9	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	12	124298415	124298415	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.3382	p.D1128Y	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	62	0	0	95	18	15.93	-	-	-	T	124298415	G	T	124298415	3	4	91	1	0	0	0	0	1	0	0	0	4634	1174	41	2	3460	2	DNAH10	12	124298415	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	34287832	124298415	9553480	63	5869										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20235848	20235848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	accaacacaggattccagtgGaatgacactggtgatgcttg	11	9	0	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	13	20235848	20235848	G	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.1802	p.G601V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	25	0	0	42	7	14.29	-	-	-	T	20235848	G	T	20235848	3	4	91	1	0	0	0	0	1	0	0	0	9799	1174	41	2	1832	2	MPHOSPH8	13	20235848	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		20235848	94934030	64	5870										
EML1	0	genome.wustl.edu	37	chr14	100364613	100364613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tcacgatagcaacaggacaaGttgcgggcacatcgaaggat	12	9	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	14	100364613	100364613	G	T	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	missense	c.928	p.V310F	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	48	0	0	104	14	11.86	-	-	-	T	100364613	G	T	100364613	3	4	91	1	0	0	0	0	1	0	0	0	5133	1029	36	4	962	4	EML1	14	100364613	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		100364613	6984927	65	5871										
PIAS1	0	genome.wustl.edu	37	chr15	68438931	68438931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttccacctacaaaaaatggcGtggaaccaaagcgacccagc	8	13	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	15	68438931	68438931	G	T	SNP	PIAS1	ENST00000249636	human	ensembl	69_37n	1	known	missense	c.721	p.V241L	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS1	HGNC	ENSG00000033800	53	0	0	99	16	13.91	-	-	-	T	68438931	G	T	68438931	3	4	91	1	0	0	0	0	1	0	0	0	11949	1145	40	3	743	3	PIAS1	15	68438931	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		68438931	34092461	66	5872			1	8		2	2	14	G		4.115338e-05
PIAS1	0	genome.wustl.edu	37	chr15	68438944	68438944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aaatggcgtggaaccaaagcGacccagccgaccaattaata	9	11	0	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	15	68438944	68438944	G	T	SNP	PIAS1	ENST00000249636	human	ensembl	69_37n	1	known	missense	c.734	p.R245L	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS1	HGNC	ENSG00000033800	61	0	0	90	30	24.59	-	-	-	T	68438944	G	T	68438944	3	4	91	1	0	0	0	0	1	0	0	0	11949	1058	37	3	756	3	PIAS1	15	68438944	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	13	68438944	34092448	67	5873			1	8		2	2	14	G		4.115338e-05
HBA2	0	genome.wustl.edu	37	chr16	223549	223549	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctgcggtgcacgcctccctgGacaagttcctggcttctgtg	12	14	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	16	223549	223549	G	T	SNP	HBA2	ENST00000251595	human	ensembl	69_37n	1	known	missense	c.379	p.D127Y	1.000	superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a,prints_Haemoglobin_pi	-	no_errors	HBA2	HGNC	ENSG00000188536	39	0	0	42	6	12.5	-	-	-	T	223549	G	T	223549	3	4	91	1	0	0	0	0	1	0	0	0	7028	1174	41	2	389	2	HBA2	16	223549	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		223549	90131204	68	5874										
RNF40	0	genome.wustl.edu	37	chr16	30779332	30779332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agaagtacaagctgagattgGcaaggtgagaaggggcctgc	16	6	0	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	16	30779332	30779332	G	T	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.1547	p.G516V	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	32	0	0	52	6	10.34	-	-	-	T	30779332	G	T	30779332	3	4	91	1	0	0	0	0	1	0	0	0	13579	1203	42	4	1589	4	RNF40	16	30779332	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	30555783	30779332	59575421	69	5875										
CDH1	0	genome.wustl.edu	37	chr16	68862107	68862107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gctgctcttgctgtttcttcGgaggagagcggtggtcaaag	15	8	3	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	16	68862107	68862107	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.2195	p.R732Q	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	98	0	0	151	38	20.11	-	-	-	A	68862107	G	A	68862107	3	1	91	1	0	0	0	0	1	0	0	0	3124	1116	39	1	2249	1	CDH1	16	68862107	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	38082775	68862107	21492646	70	5876										
SMYD4	0	genome.wustl.edu	37	chr17	1703986	1703986	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggatctacgcataagccgatGgatgatgaggcattggaaag	14	6	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	1703986	1703986	G	T	SNP	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	silent	c.702	p.S234	0.667	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	64	0	0	92	11	10.68	-	-	-	T	1703986	G	T	1703986	2	4	91	1	0	0	0	0	0	0	0	1	14913	1335	47	4		4	SMYD4	17	1703986	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		1703986	79491224	71	5877										
ULK2	0	genome.wustl.edu	37	chr17	19728468	19728468	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agcttccagagacagaaccaGaatacatgggcactggaact	10	10	0	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	19728468	19728468	G	T	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	missense	c.863	p.S288Y	0.871	superfamily_Kinase-like_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	42	0	0	35	7	16.67	-	-	-	T	19728468	G	T	19728468	3	4	91	1	0	0	0	0	1	0	0	0	17073	942	33	2	2311	2	ULK2	17	19728468	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	18024482	19728468	61466742	72	5878										
SUPT6H	0	genome.wustl.edu	37	chr17	27002030	27002030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	aaatgtcagatgacgaggacGatgacgaggaggaatatggc	15	5	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	27002030	27002030	G	T	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.388	p.D130Y	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	41	0	0	62	16	20.51	-	-	-	T	27002030	G	T	27002030	3	4	91	1	0	0	0	0	1	0	0	0	15491	1058	37	3	402	3	SUPT6H	17	27002030	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	7273562	27002030	54193180	73	5879										
FLOT2	0	genome.wustl.edu	37	chr17	27208299	27208299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gagcttcatccgctcagcctCtgccttgcccatcgcctcga	8	18	3	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	27208299	27208299	C	T	SNP	FLOT2	ENST00000394908	human	ensembl	69_37n	-1	known	missense	c.1009	p.E337K	1.000	NULL	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589	32	0	0	40	8	16.67	-	-	-	T	27208299	C	T	27208299	3	4	91	1	0	0	0	0	1	0	0	0	5983	922	32	2	289	2	FLOT2	17	27208299	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	206269	27208299	53986911	74	5880										
CCL14	0	genome.wustl.edu	37	chr17	34312816	34312816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gctgtattttaacaaccttcGgtttccccccagtttctgaa	6	12	1	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	34312816	34312816	G	T	SNP	CCL14	ENST00000435911	human	ensembl	69_37n	-1	known	missense	c.95	p.P32Q	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL14	HGNC	ENSG00000213494	74	0	0	119	21	15	-	-	-	T	34312816	G	T	34312816	3	4	91	1	0	0	0	0	1	0	0	0	2912	1116	39	3	246	3	CCL14	17	34312816	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	7104517	34312816	46882394	75	5881										
KPNB1	0	genome.wustl.edu	37	chr17	45750492	45750492	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gctgtccagaaaacgactttGgtcatcatggaacgactgca	10	10	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	45750492	45750492	G	T	SNP	KPNB1	ENST00000290158	human	ensembl	69_37n	1	known	missense	c.1656	p.L552F	0.952	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	56	0	0	68	20	22.73	-	-	-	T	45750492	G	T	45750492	3	4	91	1	0	0	0	0	1	0	0	0	8488	1339	47	4	1706	4	KPNB1	17	45750492	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	11437676	45750492	35444718	76	5882										
GH2	0	genome.wustl.edu	37	chr17	61957710	61957710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	acagctgccctccacagagcGgcactgcacgatgcgcagga	12	15	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	17	61957710	61957710	G	T	SNP	GH2	ENST00000423893	human	ensembl	69_37n	-1	known	missense	c.625	p.R209S	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	69	0	0	119	15	11.19	-	-	-	T	61957710	G	T	61957710	3	4	91	1	0	0	0	0	1	0	0	0	6420	1116	39	3	120	3	GH2	17	61957710	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	16207218	61957710	19237500	77	5883										
RBBP8	0	genome.wustl.edu	37	chr18	20596862	20596862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggagagaagaaaactgcttgGgcacacgtgtaaggaatgtg	15	5	0	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	18	20596862	20596862	G	T	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	missense	c.2429	p.G810V	1.000	pfam_DNA-repair_Sae2/CtIP	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	79	0	0	97	25	20.33	-	-	-	T	20596862	G	T	20596862	3	4	91	1	0	0	0	0	1	0	0	0	13188	1232	43	4	2491	4	RBBP8	18	20596862	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		20596862	57480386	78	5884										
OSBPL1A	0	genome.wustl.edu	37	chr18	21761133	21761133	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	atcctttccacaggatcagaGagtgaactggccttgtggat	11	9	1	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	18	21761133	21761133	G	T	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	silent	c.1788	p.L596	0.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	36	0	0	78	19	19.59	-	-	-	T	21761133	G	T	21761133	2	4	91	1	0	0	0	0	0	0	0	1	11350	929	33	2		2	OSBPL1A	18	21761133	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	1164271	21761133	56316115	79	5885										
TMPRSS9	0	genome.wustl.edu	37	chr19	2415770	2415770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ggtcagcctgaaggaagggtCccggcacttctgcggagcaa	15	11	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	2415770	2415770	C	T	SNP	TMPRSS9	ENST00000332578	human	ensembl	69_37n	1	known	missense	c.1574	p.S525F	0.296	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	20	0	0	16	4	20	-	-	-	T	2415770	C	T	2415770	3	4	91	1	0	0	0	0	1	0	0	0	16348	855	30	2	1612	2	TMPRSS9	19	2415770	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09		2415770	56713213	80	5886										
ZNF554	0	genome.wustl.edu	37	chr19	2834252	2834252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	caaccggaggcattctttgaGcgaacatcaaagaattcaca	8	10	3	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	2834252	2834252	G	T	SNP	ZNF554	ENST00000317243	human	ensembl	69_37n	1	known	missense	c.1019	p.S340I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006	37	0	0	58	9	13.43	-	-	-	T	2834252	G	T	2834252	3	4	91	1	0	0	0	0	1	0	0	0	18081	971	34	4	1037	4	ZNF554	19	2834252	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	418482	2834252	56294731	81	5887										
ZNF791	0	genome.wustl.edu	37	chr19	12738936	12738936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gcaatgtggaaaagctcttaGttgttccagttcgcttcgag	11	8	1	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	12738936	12738936	G	T	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.593	p.S198I	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	65	0	0	100	13	11.4	-	-	-	T	12738936	G	T	12738936	3	4	91	1	0	0	0	0	1	0	0	0	18256	1029	36	4	607	4	ZNF791	19	12738936	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	9904684	12738936	46390047	82	5888										
TMEM38A	0	genome.wustl.edu	37	chr19	16798954	16798954	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tccctggccaccccacctcaGgtgtttctgacagccaccca	7	19	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	16798954	16798954	G	T	SNP	TMEM38A	ENST00000187762	human	ensembl	69_37n	1	known	splice_site	c.673-1	e6-1	1.000	-	-	-	no_errors	TMEM38A	HGNC	ENSG00000072954	35	0	0	46	6	11.54	-	-	-	T	16798954	G	T	16798954	5	4	91	1	0	0	0	0	0	0	1	0	16254	1014	35	4	694	4	TMEM38A	19	16798954	Splice_Site	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	4060018	16798954	42330029	83	5889										
RAB3A	0	genome.wustl.edu	37	chr19	18309636	18309636	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gcacctgggcattgtcccatGagtaggtcttgatctgggtg	14	9	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	18309636	18309636	G	A	SNP	RAB3A	ENST00000222256	human	ensembl	69_37n	-1	known	missense	c.371	p.S124L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3A	HGNC	ENSG00000105649	41	0	0	96	14	12.73	-	-	-	A	18309636	G	A	18309636	3	1	91	1	0	0	0	0	1	0	0	0	13014	1294	45	2	299	2	RAB3A	19	18309636	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	1510682	18309636	40819347	84	5890										
GATAD2A	0	genome.wustl.edu	37	chr19	19603408	19603408	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	agaaaagcagtcctgaagaaCgagaaaggatgatcaagcag	12	6	1	5			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	19603408	19603408	C	T	SNP	GATAD2A	ENST00000404158	human	ensembl	69_37n	1	known	nonsense	c.421	p.R141*	0.998	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2A	HGNC	ENSG00000167491	38	0	0	63	18	22.22	-	-	-	T	19603408	C	T	19603408	4	4	91	1	0	0	0	0	0	1	0	0	6310	528	19	1	431	1	GATAD2A	19	19603408	Nonsense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	1293772	19603408	39525575	85	5891										
MAG	0	genome.wustl.edu	37	chr19	35793545	35793545	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tgtcacccgaggatgatggaGagtactggtgtgtggctgag	17	6	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	35793545	35793545	G	A	SNP	MAG	ENST00000392213	human	ensembl	69_37n	1	known	missense	c.1165	p.E389K	0.966	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MAG	HGNC	ENSG00000105695	27	0	0	72	10	12.2	-	-	-	A	35793545	G	A	35793545	3	1	91	1	0	0	0	0	1	0	0	0	9229	943	33	2	1183	2	MAG	19	35793545	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	16190137	35793545	23335438	86	5892										
DMPK	0	genome.wustl.edu	37	chr19	46283223	46283223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctgtctgtctccccttctctCtgcctctcagcttcacccta	4	19	6	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	19	46283223	46283223	C	T	SNP	DMPK	ENST00000343373	human	ensembl	69_37n	-1	known	missense	c.95	p.R32K	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	DMPK	HGNC	ENSG00000104936	64	0	0	64	18	21.95	-	-	-	T	46283223	C	T	46283223	3	4	91	1	0	0	0	0	1	0	0	0	4620	913	32	2	1887	2	DMPK	19	46283223	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	10489678	46283223	12845760	87	5893										
NINL	0	genome.wustl.edu	37	chr20	25498423	25498423	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ctactgtcttcatctgagggGcgaacaccagcatttgaaga	10	10	3	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	20	25498423	25498423	G	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	silent	c.243	p.R81	0.003	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	81	0	0	111	23	17.16	-	-	-	T	25498423	G	T	25498423	2	4	91	1	0	0	0	0	0	0	0	1	10492	1190	42	4		4	NINL	20	25498423	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		25498423	37527097	88	5894										
TM9SF4	0	genome.wustl.edu	37	chr20	30729674	30729674	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cagtttgaacacggctaccgGctcggcttcacagatgtcaa	10	12	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	20	30729674	30729674	G	T	SNP	TM9SF4	ENST00000398022	human	ensembl	69_37n	1	known	silent	c.504	p.R168	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337	49	0	0	68	8	10.39	-	-	-	T	30729674	G	T	30729674	2	4	91	1	0	0	0	0	0	0	0	1	16075	1190	42	4		4	TM9SF4	20	30729674	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	5231251	30729674	32295846	89	5895										
ZNFX1	0	genome.wustl.edu	37	chr20	47865238	47865238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gagcctgggcaaggatgcccGcagtccaagatagtgccaca	13	12	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	20	47865238	47865238	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.4323	p.C1441	0.268	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	30	0	0	41	9	17.31	-	-	-	A	47865238	G	A	47865238	2	1	91	1	0	0	0	0	0	0	0	1	18298	1079	38	1		1	ZNFX1	20	47865238	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	17135564	47865238	15160282	90	5896										
SLCO4A1	0	genome.wustl.edu	37	chr20	61297777	61297777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	tggcggcaccttcctgggcgGcttctttgtgaacaagctca	12	12	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	20	61297777	61297777	G	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	69_37n	1	known	missense	c.1322	p.G441V	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187	48	0	0	50	6	10.71	-	-	-	T	61297777	G	T	61297777	3	4	91	1	0	0	0	0	1	0	0	0	14818	1203	42	4	1344	4	SLCO4A1	20	61297777	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	13432539	61297777	1727743	91	5897										
CHEK2	0	genome.wustl.edu	37	chr22	29095912	29095912	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	caccactttgtcaaacagctCtcccccttccatcctgaaac	3	18	2	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	22	29095912	29095912	C	G	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.1051	p.E351Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	75	0	0	120	18	13.04	-	-	-	G	29095912	C	G	29095912	3	3	91	1	0	0	0	0	1	0	0	0	3364	922	32	2	737	2	CHEK2	22	29095912	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09		29095912	22208654	92	5898										
POLDIP3	0	genome.wustl.edu	37	chr22	42992321	42992321	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gcatcattctgaaccactttGgtgagagggagggccttgga	14	8	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	22	42992321	42992321	G	T	SNP	POLDIP3	ENST00000252115	human	ensembl	69_37n	-1	known	silent	c.684	p.T228	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	POLDIP3	HGNC	ENSG00000100227	75	0	0	104	19	15.45	-	-	-	T	42992321	G	T	42992321	2	4	91	1	0	0	0	0	0	0	0	1	12269	1335	47	4		4	POLDIP3	22	42992321	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	13896409	42992321	8312245	93	5899										
MAGEB1	0	genome.wustl.edu	37	chrX	30268639	30268639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gggtcagaagagtaagctccGtgctcgtgagaaacgccgca	14	10	1	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	X	30268639	30268639	G	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.29	p.R10H	0.491	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	31	0	0	41	7	14.58	-	-	-	A	30268639	G	A	30268639	3	1	91	1	0	0	0	0	1	0	0	0	9243	1145	40	1	31	1	MAGEB1	23	30268639	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09		30268639	125001921	94	5900										
MED12	0	genome.wustl.edu	37	chrX	70345962	70345962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gaagatatctttgctaagttCcagcacctttcacattatga	6	9	2	2			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	X	70345962	70345962	C	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.2499	p.F833L	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	25	0	0	57	18	24	-	-	-	G	70345962	C	G	70345962	3	3	91	1	0	0	0	0	1	0	0	0	9499	854	30	2	2569	2	MED12	23	70345962	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	40077323	70345962	84924598	95	5901										
HMGN5	0	genome.wustl.edu	37	chrX	80371790	80371790	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	ttggtttcagcaactgcttgGgcacttgtatctatgttttc	9	8	2	0			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	X	80371790	80371790	G	T	SNP	HMGN5	ENST00000358130	human	ensembl	69_37n	-1	known	silent	c.180	p.A60	0.020	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	150	0	0	247	64	20.58	-	-	-	T	80371790	G	T	80371790	2	4	91	1	0	0	0	0	0	0	0	1	7289	1219	43	4		4	HMGN5	23	80371790	Silent	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	10025828	80371790	74898770	96	5902										
GLRA4	0	genome.wustl.edu	37	chrX	102968564	102968564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	cacaaagagcagacacacagCcatccagatgtcgattgcct	8	13	0	3			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	X	102968564	102968564	C	T	SNP	GLRA4	ENST00000372617	human	ensembl	69_37n	-1	known	missense	c.967	p.A323T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828	69	0	0	116	15	11.45	-	-	-	T	102968564	C	T	102968564	3	4	91	1	0	0	0	0	1	0	0	0	6509	739	26	4	293	4	GLRA4	23	102968564	Missense_Mutation	SNP	C	TCGA-A2-A25A-01A-12D-A16D-09	22596774	102968564	52301996	97	5903										
AIFM1	0	genome.wustl.edu	37	chrX	129263972	129263972	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.193877551020408	19	2.92757504353347e-08	4.36281651057926	5.53643966547192	3.88269794721408	0.249161201009994	0.879709944360195	15	gctattggcattcggttaaaGatgttccatagcacaatccc	8	10	0	1			TCGA-A2-A25A-01A-12D-A16D-09	TCGA-A2-A25A-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5739a7e1-7fa3-434c-b1c3-c0a9e570c858	ad66f1d8-3521-4acf-a50f-76c6842df466	X	129263972	129263972	G	C	SNP	AIFM1	ENST00000287295	human	ensembl	69_37n	-1	known	missense	c.1743	p.I581M	1.000	superfamily_FAD/NAD-linked_Rdtase_dimer	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709	41	0	0	61	7	10.29	-	-	-	C	129263972	G	C	129263972	3	2	91	1	0	0	0	0	1	0	0	0	426	932	33	2	106	2	AIFM1	23	129263972	Missense_Mutation	SNP	G	TCGA-A2-A25A-01A-12D-A16D-09	26295408	129263972	26006588	98	5904										
PRAMEF11	0	genome.wustl.edu	37	chr1	12888424	12888424	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	agcttggaaggcctccagacAaggcatctttatcagaggcc	11	11	2	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	12888424	12888424	A	G	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.100	p.C34R	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	36	0	0	19	4	17.39	-	-	-	G	12888424	A	G	12888424	3	3	92	1	0	0	0	0	1	0	0	0	12504	130	5	5	1222	5	PRAMEF11	1	12888424	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09		12888424	236362197	1	5905										
RPA2	0	genome.wustl.edu	37	chr1	28233517	28233517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	taaacaatgttggttggagcCttctctgcatgtctgatgat	10	7	2	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	28233517	28233517	C	A	SNP	RPA2	ENST00000313433	human	ensembl	69_37n	-1	known	missense	c.519	p.K173N	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA2	HGNC	ENSG00000117748	78	0	0	26	25	49.02	-	-	-	A	28233517	C	A	28233517	3	1	92	1	0	0	0	0	1	0	0	0	13623	680	24	4	581	4	RPA2	1	28233517	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	15345093	28233517	221017104	2	5906										
HCRTR1	0	genome.wustl.edu	37	chr1	32089153	32089153	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	accacctcagcactggtgcgGaactggaagcgcccctcaga	11	15	2	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	32089153	32089153	G	A	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	1	known	silent	c.768	p.R256	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_Orexin_rcpt_1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	13	0	0	7	6	46.15	-	-	-	A	32089153	G	A	32089153	2	1	92	1	0	0	0	0	0	0	0	1	7052	1161	41	2		2	HCRTR1	1	32089153	Silent	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	3855636	32089153	217161468	3	5907										
MAN1A2	0	genome.wustl.edu	37	chr1	118039456	118039456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ggagaatggaagaatgggcaCttggaaaaaaagatggggca	16	3	0	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	118039456	118039456	C	T	SNP	MAN1A2	ENST00000449370	human	ensembl	69_37n	1	known	missense	c.554	p.T185I	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN1A2	HGNC	ENSG00000198162	68	0	0	42	19	31.15	-	-	-	T	118039456	C	T	118039456	3	4	92	1	0	0	0	0	1	0	0	0	9282	564	20	4	1394	4	MAN1A2	1	118039456	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	85950303	118039456	131211165	4	5908										
TARS2	0	genome.wustl.edu	37	chr1	150469022	150469022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gcagagagtgtcagggatttCcttccccacaacagaattgc	10	11	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	150469022	150469022	C	T	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.839	p.S280F	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	69	0	0	87	18	17.14	-	-	-	T	150469022	C	T	150469022	3	4	92	1	0	0	0	0	1	0	0	0	15652	855	30	2	869	2	TARS2	1	150469022	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	32429566	150469022	98781599	5	5909										
APOB	0	genome.wustl.edu	37	chr2	21232258	21232258	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cttaaagcctcctgtaaccaAttgatgattaaggttatttt	6	7	0	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	21232258	21232258	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.7482	p.N2494K	0.888	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	136	1	0.73	61	15	19.74	-	-	-	C	21232258	A	C	21232258	3	2	92	1	0	0	0	0	1	0	0	0	787	98	4	5	6225	5	APOB	2	21232258	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09		21232258	221967115	6	5910										
AGBL5	0	genome.wustl.edu	37	chr2	27275875	27275875	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tcagttctcgctttgattcaGggaatctagcccacgtggag	11	10	4	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	27275875	27275875	G	C	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	missense	c.49	p.G17R	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	58	0	0	20	26	56.52	-	-	-	C	27275875	G	C	27275875	3	2	92	1	0	0	0	0	1	0	0	0	378	1000	35	4	51	4	AGBL5	2	27275875	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	6043617	27275875	215923498	7	5911										
PRKCE	0	genome.wustl.edu	37	chr2	46313346	46313346	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cattttcttctctcctttcaGgaccgcctctttttcgtcat	4	14	5	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	46313346	46313346	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	splice_site	c.1438-1	e11-1	1.000	-	-	-	no_errors	PRKCE	HGNC	ENSG00000171132	87	0	0	57	13	18.57	-	-	-	A	46313346	G	A	46313346	5	1	92	1	0	0	0	0	0	0	1	0	12592	1014	35	4	1479	4	PRKCE	2	46313346	Splice_Site	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	19037471	46313346	196886027	8	5912										
NPAS2	0	genome.wustl.edu	37	chr2	101594255	101594255	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cagagcacgcccgctcccatGgcacaggtgagtctgggacc	13	15	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	101594255	101594255	G	C	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.1671	p.M557I	0.826	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	36	0	0	23	8	25.81	-	-	-	C	101594255	G	C	101594255	3	2	92	1	0	0	0	0	1	0	0	0	10635	1348	47	4	1530	4	NPAS2	2	101594255	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	55280909	101594255	141605118	9	5913										
MGAT5	0	genome.wustl.edu	37	chr2	135206253	135206253	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgccaaagctcagagctggcCaaggacatcctggtgccctc	11	14	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	135206253	135206253	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	69_37n	1	known	silent	c.2061	p.A687	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	58	0	0	32	12	27.27	-	-	-	T	135206253	C	T	135206253	2	4	92	1	0	0	0	0	0	0	0	1	9619	581	21	4		4	MGAT5	2	135206253	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	33611998	135206253	107993120	10	5914										
RBMS1	0	genome.wustl.edu	37	chr2	161159925	161159925	+	Frame_Shift_Del	DEL	T	T	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gtccaaatggtttgagcataTtttctagttcttgctcatcc							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	161159925	161159925	T	-	DEL	RBMS1	ENST00000392753	human	ensembl	69_37n	-1	known	frame_shift_del	c.476	p.N159fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250	77	0	0	57	19	25	-	-	-	-	161159925	T	-	161159925	7	5	92	1	0	1	0	1	0	0	0	0	13231	1493	52	0	780	0	RBMS1	2	161159925	Frame_Shift_Del	DEL	T	TCGA-A2-A25B-01A-11D-A167-09	25953672	161159925	82039448	11	5915										
FAP	0	genome.wustl.edu	37	chr2	163083083	163083083	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aagaaaatgttccatttaaaAtatccttcagtgtgagtgct	7	6	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	163083083	163083083	A	T	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.140	p.I47N	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	107	0	0	49	28	36.36	-	-	-	T	163083083	A	T	163083083	3	4	92	1	0	0	0	0	1	0	0	0	5719	101	4	5	2238	5	FAP	2	163083083	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	1923158	163083083	80116290	12	5916										
TTN	0	genome.wustl.edu	37	chr2	179408789	179408789	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	caagcgcaaggaggccccagCcctgatggtcacagtcttct	11	14	3	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	179408789	179408789	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.88378	p.A29460S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	75	0	0	53	11	17.19	-	-	-	A	179408789	C	A	179408789	3	1	92	1	0	0	0	0	1	0	0	0	16832	739	26	4	11965	4	TTN	2	179408789	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	16325706	179408789	63790584	13	5917										
SSFA2	0	genome.wustl.edu	37	chr2	182766619	182766619	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	agtgacctctaacaaggagaCagacccacctccacctttaa	6	14	1	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	182766619	182766619	C	A	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.839	p.T280K	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	47	0	0	27	17	37.78	-	-	-	A	182766619	C	A	182766619	3	1	92	1	0	0	0	0	1	0	0	0	15274	478	17	4	869	4	SSFA2	2	182766619	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	3357830	182766619	60432754	14	5918										
DUSP19	0	genome.wustl.edu	37	chr2	183943850	183943850	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gtgcaggaccttagctcggaCctgcaagttggcgttattaa	12	9	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	183943850	183943850	C	A	SNP	DUSP19	ENST00000354221	human	ensembl	69_37n	1	known	missense	c.189	p.D63E	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP19	HGNC	ENSG00000162999	126	0	0	87	27	23.68	-	-	-	A	183943850	C	A	183943850	3	1	92	1	0	0	0	0	1	0	0	0	4853	506	18	4	191	4	DUSP19	2	183943850	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	1177231	183943850	59255523	15	5919										
SLC22A14	0	genome.wustl.edu	37	chr3	38347782	38347782	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tcttcatgtttgctgaccacTtcgtgttcacagcccagaag	8	12	3	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	38347782	38347782	T	A	SNP	SLC22A14	ENST00000273173	human	ensembl	69_37n	1	known	missense	c.265	p.F89I	0.207	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	54	0	0	30	6	16.67	-	-	-	A	38347782	T	A	38347782	3	1	92	1	0	0	0	0	1	0	0	0	14534	1609	56	5	267	5	SLC22A14	3	38347782	Missense_Mutation	SNP	T	TCGA-A2-A25B-01A-11D-A167-09		38347782	159674648	16	5920										
ARHGAP31	0	genome.wustl.edu	37	chr3	119134300	119134300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgctcatgcactgacaggccGccgtaactcagctcctgtga	10	14	2	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	119134300	119134300	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.3524	p.R1175H	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	42	0	0	33	8	19.51	-	-	-	A	119134300	G	A	119134300	3	1	92	1	0	0	0	0	1	0	0	0	882	1087	38	1	3570	1	ARHGAP31	3	119134300	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	80786518	119134300	78888130	17	5921										
KALRN	0	genome.wustl.edu	37	chr3	124174098	124174098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aaaggccacattcatgccacGgagataaggaaatgggtgac	12	8	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	124174098	124174098	G	A	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	1	novel	missense	c.3527	p.R1176Q	0.964	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	43	0	0	18	6	25	-	-	-	A	124174098	G	A	124174098	3	1	92	1	0	0	0	0	1	0	0	0	8029	1103	39	1	3707	1	KALRN	3	124174098	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	5039798	124174098	73848332	18	5922										
COL6A6	0	genome.wustl.edu	37	chr3	130380981	130380981	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aatccttgcgagccaaatgtCagggatatgccttatttgtg	10	8	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	130380981	130380981	C	G	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.6331	p.Q2111E	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	98	0	0	52	18	25.71	-	-	-	G	130380981	C	G	130380981	3	3	92	1	0	0	0	0	1	0	0	0	3733	827	29	2	6465	2	COL6A6	3	130380981	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	6206883	130380981	67641449	19	5923										
EPHB1	0	genome.wustl.edu	37	chr3	134884889	134884889	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ggggtcgtgttcgttgtgtcCttggtggccatctctatcgt	14	9	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	134884889	134884889	C	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.1665	p.S555	0.133	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	42	0	0	24	17	41.46	-	-	-	A	134884889	C	A	134884889	2	1	92	1	0	0	0	0	0	0	0	1	5211	668	24	4		4	EPHB1	3	134884889	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	4503908	134884889	63137541	20	5924										
SLC2A2	0	genome.wustl.edu	37	chr3	170736404	170736404	+	Frame_Shift_Del	DEL	C	C	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	atgacagtgaaaaccagggtCccagtgacctgcagggggcg							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	170736404	170736404	C	-	DEL	SLC2A2	ENST00000314251	human	ensembl	69_37n	-1	known	frame_shift_del	c.24	p.T9fs	0.760	superfamily_MFS_dom_general_subst_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	39	0	0	42	22	33.33	-	-	-	-	170736404	C	-	170736404	7	5	92	1	0	1	0	1	0	0	0	0	14633	842	30	0	1590	0	SLC2A2	3	170736404	Frame_Shift_Del	DEL	C	TCGA-A2-A25B-01A-11D-A167-09	35851515	170736404	27286026	21	5925										
UGDH	0	genome.wustl.edu	37	chr4	39505533	39505533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tagttcattgtggagcccatCcaggacacgccgtccatcga	10	13	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	39505533	39505533	C	T	SNP	UGDH	ENST00000316423	human	ensembl	69_37n	-1	known	missense	c.1336	p.D446N	1.000	pfam_UDP-Glc/GDP-Man_DH_C,superfamily_UDP-Glc/GDP-Man_DH_C	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Nucleotide_sugar_DH	-	no_errors	UGDH	HGNC	ENSG00000109814	69	0	0	54	7	11.48	-	-	-	T	39505533	C	T	39505533	3	4	92	1	0	0	0	0	1	0	0	0	17037	855	30	2	156	2	UGDH	4	39505533	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		39505533	151648743	22	5926										
NUP54	0	genome.wustl.edu	37	chr4	77038880	77038881	+	Frame_Shift_Del	DEL	AA	AA	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tcttcagatctgactgctccAaaatgattctgcatcctgat							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	77038880	77038881	AA	-	DEL	NUP54	ENST00000264883	human	ensembl	69_37n	-1	known	frame_shift_del	c.1332_1331	p.F444fs	1.000:1.000	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750	60	0	0	34	13	27.66	-	-	-	-	77038881	AA	-	77038880	7	5	92	1	0	1	0	1	0	0	0	0	10840	127	5	0	199	0	NUP54	4	77038880	Frame_Shift_Del	DEL	AA	TCGA-A2-A25B-01A-11D-A167-09	37533347	77038880	114115396	23	5927										
DNAH5	0	genome.wustl.edu	37	chr5	13700790	13700790	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ttatgacaggcatcaactcaAagagcacttttggctttgat	8	8	2	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	13700790	13700790	A	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.13682	p.F4561Y	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	79	0	0	85	11	11.46	-	-	-	T	13700790	A	T	13700790	3	4	92	1	0	0	0	0	1	0	0	0	4640	14	1	5	200	5	DNAH5	5	13700790	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09		13700790	167214470	24	5928										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712271	140712271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ggatctccgacatcctggccGacctgggcagcctcgagccc	12	17	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	140712271	140712271	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.2020	p.D674N	0.981	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	34	0	0	26	10	27.78	-	-	-	A	140712271	G	A	140712271	3	1	92	1	0	0	0	0	1	0	0	0	11623	1058	37	1	2022	1	PCDHGA1	5	140712271	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	127011481	140712271	40202989	25	5929										
RBM27	0	genome.wustl.edu	37	chr5	145651050	145651050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ttttgttgttattcaggctgCacggttaggtattttacctg	10	6	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	145651050	145651050	C	T	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.2801	p.A934V	1.000	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	120	0	0	74	11	12.94	-	-	-	T	145651050	C	T	145651050	3	4	92	1	0	0	0	0	1	0	0	0	13210	710	25	4	2875	4	RBM27	5	145651050	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	4938779	145651050	35264210	26	5930										
HIST1H2BJ	0	genome.wustl.edu	37	chr6	27100352	27100352	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aaacgaattcatgatgcccaTggccttggacgaaatgccgg	11	10	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	27100352	27100352	T	G	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	69_37n	-1	known	missense	c.178	p.M60L	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635	88	0	0	88	21	19.27	-	-	-	G	27100352	T	G	27100352	3	3	92	1	0	0	0	0	1	0	0	0	7200	1464	51	5	206	5	HIST1H2BJ	6	27100352	Missense_Mutation	SNP	T	TCGA-A2-A25B-01A-11D-A167-09		27100352	144014715	27	5931										
ENPP1	0	genome.wustl.edu	37	chr6	132206110	132206110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgacaccctactgcgaaagtAtgctgaagaaagaaatggtg	11	7	0	4			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	132206110	132206110	A	G	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.2351	p.Y784C	0.996	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	132	0	0	68	9	11.69	-	-	-	G	132206110	A	G	132206110	3	3	92	1	0	0	0	0	1	0	0	0	5166	449	16	5	2441	5	ENPP1	6	132206110	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	105105758	132206110	38908957	28	5932										
CRCP	0	genome.wustl.edu	37	chr7	65579837	65579837	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgcagcgcggcgatcccggcGagcaccttggcgcgcggagc	17	15	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	65579837	65579837	G	T	SNP	CRCP	ENST00000431089	human	ensembl	69_37n	1	putative	nonsense	c.22	p.E8*	0.993	NULL	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	CRCP	HGNC	ENSG00000241258	38	0	0	28	8	22.22	-	-	-	T	65579837	G	T	65579837	4	4	92	1	0	0	0	0	0	1	0	0	3882	1059	37	3	24	3	CRCP	7	65579837	Nonsense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09		65579837	93558826	29	5933										
ASNS	0	genome.wustl.edu	37	chr7	97481770	97481770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gggctgcatttgccatcattGcatcatcaacctgtaagaat	8	10	3	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	97481770	97481770	G	A	SNP	ASNS	ENST00000175506	human	ensembl	69_37n	-1	known	missense	c.1487	p.A496V	0.134	NULL	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669	79	0	0	68	12	15	-	-	-	A	97481770	G	A	97481770	3	1	92	1	0	0	0	0	1	0	0	0	1052	1319	46	4	202	4	ASNS	7	97481770	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	31901933	97481770	61656893	30	5934										
PRSS55	0	genome.wustl.edu	37	chr8	10383206	10383206	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	atcctaggcagggctaggggAgcccaccgccctcagccccc	12	18	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	10383206	10383206	A	G	SNP	PRSS55	ENST00000328655	human	ensembl	69_37n	1	known	silent	c.111	p.G37	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647	23	0	0	18	8	30.77	-	-	-	G	10383206	A	G	10383206	2	3	92	1	0	0	0	0	0	0	0	1	12714	291	11	5		5	PRSS55	8	10383206	Silent	SNP	A	TCGA-A2-A25B-01A-11D-A167-09		10383206	135980816	31	5935										
BLK	0	genome.wustl.edu	37	chr8	11412989	11412989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ggacaattcggcgaagtctgGatgggtgagtgtgtgcacac	16	7	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	11412989	11412989	G	T	SNP	BLK	ENST00000259089	human	ensembl	69_37n	1	known	missense	c.768	p.W256C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	76	0	0	21	40	65.57	-	-	-	T	11412989	G	T	11412989	3	4	92	1	0	0	0	0	1	0	0	0	1449	1183	41	2	794	2	BLK	8	11412989	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	1029783	11412989	134951033	32	5936										
PSD3	0	genome.wustl.edu	37	chr8	18457916	18457916	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cccttcagtacagcataaaaGgttttccatcctcgttttcc	5	13	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	18457916	18457916	G	T	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	silent	c.2445	p.T815	0.994	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	154	1	0.65	69	27	28.12	-	-	-	T	18457916	G	T	18457916	2	4	92	1	0	0	0	0	0	0	0	1	12728	987	35	4		4	PSD3	8	18457916	Silent	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	7044927	18457916	127906106	33	5937										
PMP2	0	genome.wustl.edu	37	chr8	82355662	82355662	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ctcatagattctggtgcacaCcacgcccttcattttacatt	5	13	3	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	82355662	82355662	C	A	SNP	PMP2	ENST00000256103	human	ensembl	69_37n	-1	known	missense	c.370	p.V124L	0.900	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	PMP2	HGNC	ENSG00000147588	95	0	0	111	28	20.14	-	-	-	A	82355662	C	A	82355662	3	1	92	1	0	0	0	0	1	0	0	0	12212	507	18	4	32	4	PMP2	8	82355662	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	63897746	82355662	64008360	34	5938										
RIPK2	0	genome.wustl.edu	37	chr8	90777697	90777697	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gacttgaagactcagaatatCttattggacaatgaatttca	7	6	3	4			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	90777697	90777697	C	T	SNP	RIPK2	ENST00000220751	human	ensembl	69_37n	1	known	silent	c.456	p.I152	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_CARD,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312	61	0	0	49	22	30.99	-	-	-	T	90777697	C	T	90777697	2	4	92	1	0	0	0	0	0	0	0	1	13467	903	32	2		2	RIPK2	8	90777697	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	8422035	90777697	55586325	35	5939										
SLC30A8	0	genome.wustl.edu	37	chr8	118165274	118165274	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ctgctcagtctcttctccctGtggttgtcatcgaagcctcc	8	15	4	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	118165274	118165274	G	C	SNP	SLC30A8	ENST00000456015	human	ensembl	69_37n	1	known	silent	c.363	p.L121	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756	80	0	0	85	14	14.14	-	-	-	C	118165274	G	C	118165274	2	2	92	1	0	0	0	0	0	0	0	1	14650	1364	48	4		4	SLC30A8	8	118165274	Silent	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	27387577	118165274	28198748	36	5940										
TG	0	genome.wustl.edu	37	chr8	133910025	133910025	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	agcctgtgcagtgccacgctGggactggtaaggagggatag	17	8	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133910025	133910025	G	A	SNP	TG	ENST00000523756	human	ensembl	69_37n	1	known	nonsense	c.92	p.W31*	0.005	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TG	HGNC	ENSG00000042832	27	0	0	31	19	38	-	-	-	A	133910025	G	A	133910025	4	1	92	1	0	0	0	0	0	1	0	0	15908	1348	47	4	3179	4	TG	8	133910025	Nonsense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	15744751	133910025	12453997	37	5941										
TG	0	genome.wustl.edu	37	chr8	133953777	133953777	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gatggcttcgtcctcacacaGgttcaaggaggtaatgttgg	13	8	2	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133953777	133953777	G	C	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.5223	p.Q1741H	0.200	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	44	0	0	41	26	38.81	-	-	-	C	133953777	G	C	133953777	3	2	92	1	0	0	0	0	1	0	0	0	15908	991	35	4	5325	4	TG	8	133953777	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	43752	133953777	12410245	38	5942										
WISP1	0	genome.wustl.edu	37	chr8	134237778	134237778	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tggcctgagcaagagagccgCctctgcaacttgcggccatg	13	13	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	134237778	134237778	C	A	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	1	known	silent	c.756	p.R252	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	32	0	0	29	4	12.12	-	-	-	A	134237778	C	A	134237778	2	1	92	1	0	0	0	0	0	0	0	1	17469	726	26	4		4	WISP1	8	134237778	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	284001	134237778	12126244	39	5943										
GLDC	0	genome.wustl.edu	37	chr9	6533047	6533048	+	Frame_Shift_Ins	INS	-	-	GG													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ccctcttttgttcagaaaatINSggagactcataaacttccat							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	6533047	6533048	-	GG	INS	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3033_3032	p.F1012fs	0.009:1.000	NULL	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	79	0	0	39	6	13.33	-	-	-	GG	6533048	-	GG	6533047	7	5	92	1	0	1	1	0	0	0	0	0	6485	1451	51	0	33	0	GLDC	9	6533047	Frame_Shift_Ins	INS	-	TCGA-A2-A25B-01A-11D-A167-09		6533047	134680384	40	5944										
PDCL	0	genome.wustl.edu	37	chr9	125588988	125588988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gcctcggtccttgtcctcgtGgtcactgtcctcatcctcac	8	17	3	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	125588988	125588988	G	T	SNP	PDCL	ENST00000259467	human	ensembl	69_37n	-1	known	missense	c.79	p.H27N	0.461	NULL	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940	96	0	0	55	7	11.29	-	-	-	T	125588988	G	T	125588988	3	4	92	1	0	0	0	0	1	0	0	0	11699	1348	47	4	838	4	PDCL	9	125588988	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	119055941	125588988	15624443	41	5945										
CRAT	0	genome.wustl.edu	37	chr9	131860611	131860611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gggaagtcttttccaaaatgGtggaacaccatcacggtgat	11	8	2	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	131860611	131860611	G	A	SNP	CRAT	ENST00000455396	human	ensembl	69_37n	-1	novel	missense	c.40	p.P14S	0.782	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRAT	HGNC	ENSG00000095321	40	0	0	27	6	18.18	-	-	-	A	131860611	G	A	131860611	3	1	92	1	0	0	0	0	1	0	0	0	3877	1252	44	4	655	4	CRAT	9	131860611	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	6271623	131860611	9352820	42	5946										
GATA3	0	genome.wustl.edu	37	chr10	8115852	8115853	+	Frame_Shift_Del	DEL	AT	AT	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cggccgccctctccagacacAtgtcctccctgagccacatc							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	8115852	8115853	AT	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1201_1202	p.M401fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	70	0	0	34	13	26.53	-	-	-	-	8115853	AT	-	8115852	7	5	92	1	0	1	0	1	0	0	0	0	6305	217	8	0	1219	0	GATA3	10	8115852	Frame_Shift_Del	DEL	AT	TCGA-A2-A25B-01A-11D-A167-09		8115852	127418895	43	5947										
KIAA1217	0	genome.wustl.edu	37	chr10	24833030	24833030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tctatgaagaagaggaagagGatggcaccctgaaacagcac	12	8	1	5			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	24833030	24833030	G	T	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	missense	c.4831	p.D1611Y	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	49	0	0	36	4	10	-	-	-	T	24833030	G	T	24833030	3	4	92	1	0	0	0	0	1	0	0	0	8268	1174	41	2	4905	2	KIAA1217	10	24833030	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	16717178	24833030	110701717	44	5948										
FAM13C	0	genome.wustl.edu	37	chr10	61023859	61023859	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	atttacctttgagctgtttaCgacctttagccaaatcattc	5	10	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	61023859	61023859	C	G	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.1010	p.R337P	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	101	0	0	53	13	19.7	-	-	-	G	61023859	C	G	61023859	3	3	92	1	0	0	0	0	1	0	0	0	5494	536	19	3	771	3	FAM13C	10	61023859	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	36190829	61023859	74510888	45	5949										
DTX4	0	genome.wustl.edu	37	chr11	58949292	58949292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tggtgtgggagtgggagaacGacaatggctcctggacgccc	17	9	0	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	58949292	58949292	G	A	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	1	known	missense	c.292	p.D98N	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	37	0	0	28	8	22.22	-	-	-	A	58949292	G	A	58949292	3	1	92	1	0	0	0	0	1	0	0	0	4832	1058	37	1	298	1	DTX4	11	58949292	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09		58949292	76057224	46	5950										
ODZ4	0	genome.wustl.edu	37	chr11	78381001	78381001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ctgtggtgatgatctggttaAtgtcatagtaaatgacacca	10	6	2	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	78381001	78381001	A	G	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.6389	p.I2130T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	39	0	0	19	9	31.03	-	-	-	G	78381001	A	G	78381001	3	3	92	1	0	0	0	0	1	0	0	0	10910	101	4	5	1932	5	ODZ4	11	78381001	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	19431709	78381001	56625515	47	5951										
FAT3	0	genome.wustl.edu	37	chr11	92614034	92614034	+	Frame_Shift_Del	DEL	G	G	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tcatctgcaattgtaaagctGggctcactggagtcacgtaa							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	92614034	92614034	G	-	DEL	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_del	c.12265	p.L4090fs	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	51	0	0	13	2	12.5	-	-	-	-	92614034	G	-	92614034	7	5	92	1	0	1	0	1	0	0	0	0	5737	1348	47	0	12351	0	FAT3	11	92614034	Frame_Shift_Del	DEL	G	TCGA-A2-A25B-01A-11D-A167-09	14233033	92614034	42392482	48	5952										
CARD17	0	genome.wustl.edu	37	chr11	104971500	104971500	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gctttctcttctccttcaggAccttgtctgtttggagcaca	8	12	4	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	104971500	104971500	A	T	SNP	CARD17	ENST00000375707	human	ensembl	69_37n	-1	known	missense	c.14	p.V5D	0.090	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD17	HGNC	ENSG00000255221	137	0	0	61	16	20.78	-	-	-	T	104971500	A	T	104971500	3	4	92	1	0	0	0	0	1	0	0	0	2673	275	10	5	326	5	CARD17	11	104971500	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	12357466	104971500	30035016	49	5953										
SORL1	0	genome.wustl.edu	37	chr11	121458742	121458742	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cttacagagcccctctgtacGcacttcatggactttgtgtg	9	12	2	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	121458742	121458742	G	A	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.3828	p.T1276	0.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	81	0	0	42	7	14.29	-	-	-	A	121458742	G	A	121458742	2	1	92	1	0	0	0	0	0	0	0	1	15023	1074	38	1		1	SORL1	11	121458742	Silent	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	16487242	121458742	13547774	50	5954										
ERC1	0	genome.wustl.edu	37	chr12	1137553	1137553	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	agacacagctgaaggaagtaTtaagagaaaatgatctcttg	10	5	1	4			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	1137553	1137553	T	C	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	silent	c.484	p.L162	0.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	50	0	0	19	7	26.92	-	-	-	C	1137553	T	C	1137553	2	2	92	1	0	0	0	0	0	0	0	1	5247	1490	52	5		5	ERC1	12	1137553	Silent	SNP	T	TCGA-A2-A25B-01A-11D-A167-09		1137553	132714342	51	5955										
CD9	0	genome.wustl.edu	37	chr12	6344725	6344725	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gacgtactcgaaaccttcacCgtgaaggtaaactcagacca	8	12	2	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	6344725	6344725	C	G	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	silent	c.531	p.T177	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	84	0	0	37	13	26	-	-	-	G	6344725	C	G	6344725	2	3	92	1	0	0	0	0	0	0	0	1	3075	639	23	3		3	CD9	12	6344725	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	5207172	6344725	127507170	52	5956										
GAPDH	0	genome.wustl.edu	37	chr12	6646882	6646882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ctgccaaggctgtgggcaagGtcatccctgagctgaacggg	15	11	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	6646882	6646882	G	C	SNP	GAPDH	ENST00000229239	human	ensembl	69_37n	1	known	missense	c.658	p.V220L	1.000	pfam_GlycerAld_3-P_DH_cat,pirsf_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,pirsf_GlycerAld/Erythrose_P_DH,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDH	HGNC	ENSG00000111640	20	0	0	10	5	33.33	-	-	-	C	6646882	G	C	6646882	3	2	92	1	0	0	0	0	1	0	0	0	6286	1261	44	4	684	4	GAPDH	12	6646882	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	302157	6646882	127205013	53	5957										
KIAA0528	0	genome.wustl.edu	37	chr12	22627752	22627752	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	taacttcatccgagctttctGattgagatcttagaagtctt	7	8	4	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	22627752	22627752	G	C	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	nonsense	c.1976	p.S659*	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	112	0	0	53	25	32.05	-	-	-	C	22627752	G	C	22627752	4	2	92	1	0	0	0	0	0	1	0	0	8234	1294	45	2	1066	2	KIAA0528	12	22627752	Nonsense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	15980870	22627752	111224143	54	5958										
TMED2	0	genome.wustl.edu	37	chr12	124074976	124074976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	acaggaatacatggaagtccGggagagaatacacagagcca	12	8	0	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	124074976	124074976	G	A	SNP	TMED2	ENST00000262225	human	ensembl	69_37n	1	known	missense	c.461	p.R154Q	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598	76	0	0	50	12	19.35	-	-	-	A	124074976	G	A	124074976	3	1	92	1	0	0	0	0	1	0	0	0	16099	1116	39	1	471	1	TMED2	12	124074976	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	101447224	124074976	9776919	55	5959										
FRY	0	genome.wustl.edu	37	chr13	32863812	32863812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tatataagctacacttccagCtgctattgctttttcagtcc	5	11	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	32863812	32863812	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	silent	c.8512	p.L2838	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	60	0	0	40	9	18.37	-	-	-	T	32863812	C	T	32863812	2	4	92	1	0	0	0	0	0	0	0	1	6112	796	28	4		4	FRY	13	32863812	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		32863812	82306066	56	5960										
TBC1D4	0	genome.wustl.edu	37	chr13	75936460	75936460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gcaggcagtctccgggggacCcgggcaccaccacctccaag	13	17	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	75936460	75936460	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.782	p.G261E	0.000	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	27	0	0	19	4	17.39	-	-	-	T	75936460	C	T	75936460	3	4	92	1	0	0	0	0	1	0	0	0	15717	623	22	4	3194	4	TBC1D4	13	75936460	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	43072648	75936460	39233418	57	5961										
OR4N5	0	genome.wustl.edu	37	chr14	20612251	20612251	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ttcctcctcgttgtgatggcCtttgaccgctacatcgccat	8	14	0	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	14	20612251	20612251	C	G	SNP	OR4N5	ENST00000333629	human	ensembl	69_37n	1	known	silent	c.357	p.A119	0.984	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4N5	HGNC	ENSG00000184394	80	0	0	54	8	12.9	-	-	-	G	20612251	C	G	20612251	2	3	92	1	0	0	0	0	0	0	0	1	11152	668	24	4		4	OR4N5	14	20612251	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		20612251	86737289	58	5962										
ZFYVE19	0	genome.wustl.edu	37	chr15	41099910	41099910	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gtgggcgtgtggggcggggcAgggcagggaagggaagggcg	27	5	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	41099910	41099910	A	G	SNP	ZFYVE19	ENST00000568062	human	ensembl	69_37n	1	known	missense	c.71	p.Q24R	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE19	HGNC	ENSG00000166140	20	0	0	20	5	20	-	-	-	G	41099910	A	G	41099910	3	3	92	1	0	0	0	0	1	0	0	0	17761	175	7	5	125	5	ZFYVE19	15	41099910	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09		41099910	61431482	59	5963										
PLA2G4D	0	genome.wustl.edu	37	chr15	42379619	42379619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	acagctgtaggatcacgtaaGggtcggcctcactcactgcc	11	13	3	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42379619	42379619	G	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.134	p.P45H	0.860	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	54	0	0	37	10	21.28	-	-	-	T	42379619	G	T	42379619	3	4	92	1	0	0	0	0	1	0	0	0	12078	1000	35	4	2394	4	PLA2G4D	15	42379619	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	1279709	42379619	60151773	60	5964										
TMEM87A	0	genome.wustl.edu	37	chr15	42531871	42531871	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aatataaagtcacttacaatCatcaagggatagtcttcaag	6	7	5	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42531871	42531871	C	T	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.681	p.M227I	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	80	0	0	36	11	23.4	-	-	-	T	42531871	C	T	42531871	3	4	92	1	0	0	0	0	1	0	0	0	16305	826	29	2	1038	2	TMEM87A	15	42531871	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	152252	42531871	59999521	61	5965										
TMOD3	0	genome.wustl.edu	37	chr15	52181319	52181319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tataatgggaagtagtaatgGtgttgaccaagaacattttt	10	3	0	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	52181319	52181319	G	A	SNP	TMOD3	ENST00000308580	human	ensembl	69_37n	1	known	missense	c.473	p.G158D	1.000	NULL	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	66	0	0	45	7	13.46	-	-	-	A	52181319	G	A	52181319	3	1	92	1	0	0	0	0	1	0	0	0	16330	1261	44	4	487	4	TMOD3	15	52181319	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	9649448	52181319	50350073	62	5966										
ABCC6	0	genome.wustl.edu	37	chr16	16263518	16263518	+	Frame_Shift_Del	DEL	G	G	-													0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cgtaccttggagacagccgaGgagcccgaagatcccgccac							TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	16263518	16263518	G	-	DEL	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	frame_shift_del	c.2980	p.L994fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	14	0	0	5	3	37.5	-	-	-	-	16263518	G	-	16263518	7	5	92	1	0	1	0	1	0	0	0	0	57	1000	35	0	1571	0	ABCC6	16	16263518	Frame_Shift_Del	DEL	G	TCGA-A2-A25B-01A-11D-A167-09		16263518	74091235	63	5967										
ATP2A1	0	genome.wustl.edu	37	chr16	28899040	28899040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tggctgtggctgccatccccGaaggtatgaaagcctttctt	11	11	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	28899040	28899040	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.925	p.E309K	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	54	0	0	38	13	25.49	-	-	-	A	28899040	G	A	28899040	3	1	92	1	0	0	0	0	1	0	0	0	1140	1059	37	1	955	1	ATP2A1	16	28899040	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	12635522	28899040	61455713	64	5968										
HYDIN	0	genome.wustl.edu	37	chr16	70954761	70954761	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ctctcccggtccttgcggccCctgcgcccacccaaggggac	11	20	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	70954761	70954761	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.7515	p.R2505S	0.422	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	50	0	0	38	8	17.39	-	-	-	A	70954761	C	A	70954761	3	1	92	1	0	0	0	0	1	0	0	0	7521	622	22	4	8011	4	HYDIN	16	70954761	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	42055721	70954761	19399992	65	5969										
PRPF8	0	genome.wustl.edu	37	chr17	1582137	1582137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aaacgcagaacttcccgacaCaggtggaaagcattcccaaa	8	12	0	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	1582137	1582137	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	silent	c.1638	p.L546	0.994	pfam_PROCN,superfamily_Histone-fold	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	47	0	0	25	12	32.43	-	-	-	T	1582137	C	T	1582137	2	4	92	1	0	0	0	0	0	0	0	1	12656	465	17	4		4	PRPF8	17	1582137	Silent	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		1582137	79613073	66	5970										
SLFN12L	0	genome.wustl.edu	37	chr17	33802086	33802086	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gtttgagctgttgtccaataGtaggattcagggtaaattac	11	5	1	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	33802086	33802086	G	T	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	nonsense	c.1716	p.Y572*	0.010	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	166	0	0	204	23	10.13	-	-	-	T	33802086	G	T	33802086	4	4	92	1	0	0	0	0	0	1	0	0	14824	1024	36	4	147	4	SLFN12L	17	33802086	Nonsense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	32219949	33802086	47393124	67	5971										
BRCA1	0	genome.wustl.edu	37	chr17	41245390	41245390	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aaggctaggattgacaaattCtttaagttcactggtatttg	9	5	2	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	41245390	41245390	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	nonsense	c.2158	p.E720*	0.008	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	82	0	0	9	33	78.57	-	-	-	A	41245390	C	A	41245390	4	1	92	1	0	0	0	0	0	1	0	0	1506	922	32	2	3559	2	BRCA1	17	41245390	Nonsense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	7443304	41245390	39949820	68	5972										
ABCA9	0	genome.wustl.edu	37	chr17	66979929	66979929	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ttgtgccaggttcttcagctTcatctccagcaggtagtctt	9	11	5	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	66979929	66979929	T	C	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.4561	p.K1521E	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	101	0	0	101	17	14.41	-	-	-	C	66979929	T	C	66979929	3	2	92	1	0	0	0	0	1	0	0	0	39	1792	62	5	329	5	ABCA9	17	66979929	Missense_Mutation	SNP	T	TCGA-A2-A25B-01A-11D-A167-09	25734539	66979929	14215281	69	5973										
CHST9	0	genome.wustl.edu	37	chr18	24497140	24497140	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cttgttaaaaacagtcttagCtccttgacgtttttcaatca	5	9	3	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	24497140	24497140	C	A	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.415	p.A139S	0.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	105	1	0.94	86	30	25.86	-	-	-	A	24497140	C	A	24497140	3	1	92	1	0	0	0	0	1	0	0	0	3440	797	28	4	920	4	CHST9	18	24497140	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		24497140	53580108	70	5974										
KIAA1328	0	genome.wustl.edu	37	chr18	34646885	34646885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	aaaagcactctccagtgttcAtctgtggaactggatggttc	10	9	3	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	34646885	34646885	A	C	SNP	KIAA1328	ENST00000587139	human	ensembl	69_37n	1	putative	missense	c.572	p.H191P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1328	HGNC	ENSG00000150477	70	0	0	31	11	26.19	-	-	-	C	34646885	A	C	34646885	3	2	92	1	0	0	0	0	1	0	0	0	8277	204	8	5	635	5	KIAA1328	18	34646885	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	10149745	34646885	43430363	71	5975										
SMAD4	0	genome.wustl.edu	37	chr18	48575132	48575132	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgatcttcacaaaaatgaacTaaaacatgttaaatattgtc	4	6	2	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	48575132	48575132	T	G	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	missense	c.326	p.L109R	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	80	0	0	37	7	15.91	-	-	-	G	48575132	T	G	48575132	3	3	92	1	0	0	0	0	1	0	0	0	14849	1522	53	5	332	5	SMAD4	18	48575132	Missense_Mutation	SNP	T	TCGA-A2-A25B-01A-11D-A167-09	13928247	48575132	29502116	72	5976										
DNMT1	0	genome.wustl.edu	37	chr19	10291057	10291057	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ccatcggacttgctcctcctGggcgtgcgaggtttggaaag	14	11	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	10291057	10291057	G	A	SNP	DNMT1	ENST00000590619	human	ensembl	69_37n	-1	novel	nonsense	c.1	p.Q1*	0.013	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	DNMT1	HGNC	ENSG00000130816	93	0	0	39	17	30.36	-	-	-	A	10291057	G	A	10291057	4	1	92	1	0	0	0	0	0	1	0	0	4710	1335	47	4	4636	4	DNMT1	19	10291057	Nonsense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09		10291057	48837926	73	5977										
DOCK6	0	genome.wustl.edu	37	chr19	11313275	11313275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	cgtgcctccagccggtgtgaGatctctgccagcttcgtgat	12	13	1	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	11313275	11313275	G	A	SNP	DOCK6	ENST00000587656	human	ensembl	69_37n	-1	novel	missense	c.3211	p.L1071F	0.988	NULL	pfam_DOCK	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK6	HGNC	ENSG00000130158	36	0	0	14	6	30	-	-	-	A	11313275	G	A	11313275	3	1	92	1	0	0	0	0	1	0	0	0	4726	932	33	2	825	2	DOCK6	19	11313275	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	1022218	11313275	47815708	74	5978										
PSG2	0	genome.wustl.edu	37	chr19	43585335	43585335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	ccttcccctcggaaacttttGgtggctgggcttcaatcgtg	11	12	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	43585335	43585335	G	A	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	missense	c.128	p.P43L	0.005	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG2	HGNC	ENSG00000242221	204	0	0	180	29	13.88	-	-	-	A	43585335	G	A	43585335	3	1	92	1	0	0	0	0	1	0	0	0	12735	1348	47	4	895	4	PSG2	19	43585335	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	32272060	43585335	15543648	75	5979										
ZNF544	0	genome.wustl.edu	37	chr19	58773419	58773419	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gctatgagttagttacacatAaaagaacgcacactggagaa	9	7	0	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	58773419	58773419	A	G	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.1447	p.K483E	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	64	0	0	51	11	17.74	-	-	-	G	58773419	A	G	58773419	3	3	92	1	0	0	0	0	1	0	0	0	18073	363	13	5	1461	5	ZNF544	19	58773419	Missense_Mutation	SNP	A	TCGA-A2-A25B-01A-11D-A167-09	15188084	58773419	355564	76	5980										
NRK	0	genome.wustl.edu	37	chrX	105168991	105168991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	atggtccaggattgaagagaCctgcgtctcaggactttgaa	12	8	1	3			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	105168991	105168991	C	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.3283	p.P1095T	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	38	0	0	16	9	36	-	-	-	A	105168991	C	A	105168991	3	1	92	1	0	0	0	0	1	0	0	0	10728	507	18	4	3354	4	NRK	23	105168991	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09		105168991	50101569	77	5981										
SMARCA1	0	genome.wustl.edu	37	chrX	128641922	128641922	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gatattgataacttaccttaGatttttcattctttattctg	4	6	3	2			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	128641922	128641922	G	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.962	p.S321Y	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	72	0	0	38	6	13.64	-	-	-	T	128641922	G	T	128641922	3	4	92	1	0	0	0	0	1	0	0	0	14857	942	33	2	2274	2	SMARCA1	23	128641922	Missense_Mutation	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	23472931	128641922	26628638	78	5982										
RAB33A	0	genome.wustl.edu	37	chrX	129318289	129318289	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	gggacacagcaggtcaggaaCgtttccgcaaaagcatggtc	13	10	1	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	129318289	129318289	C	A	SNP	RAB33A	ENST00000257017	human	ensembl	69_37n	1	known	missense	c.289	p.R97S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594	55	0	0	13	4	23.53	-	-	-	A	129318289	C	A	129318289	3	1	92	1	0	0	0	0	1	0	0	0	13005	536	19	3	295	3	RAB33A	23	129318289	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	676367	129318289	25952271	79	5983										
FHL1	0	genome.wustl.edu	37	chrX	135288738	135288738	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgccgcaagcccatcggtgcGgactccaaggtaacgggcat	13	13	0	0			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	135288738	135288738	G	A	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	1	known	silent	c.147	p.A49	0.084	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	32	0	0	17	4	19.05	-	-	-	A	135288738	G	A	135288738	2	1	92	1	0	0	0	0	0	0	0	1	5924	1103	39	1		1	FHL1	23	135288738	Silent	SNP	G	TCGA-A2-A25B-01A-11D-A167-09	5970449	135288738	19981822	80	5984										
ATP2B3	0	genome.wustl.edu	37	chrX	152835130	152835130	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0617283950617284	5	0.884157066679131	0.990559937928359	1.46602870813397	0.814460393407762	1	1	0	tgcgccggcggtcttcggtcCtcagccagcttcatgacgta	12	14	3	1			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	152835130	152835130	C	A	SNP	ATP2B3	ENST00000359149	human	ensembl	69_37n	1	known	missense	c.3412	p.L1138I	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_ATP_Ca_trans_C,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	126	0	0	104	21	16.8	-	-	-	A	152835130	C	A	152835130	3	1	92	1	0	0	0	0	1	0	0	0	1145	681	24	4	3490	4	ATP2B3	23	152835130	Missense_Mutation	SNP	C	TCGA-A2-A25B-01A-11D-A167-09	17546392	152835130	2435430	81	5985										
HMCN1	0	genome.wustl.edu	37	chr1	185962313	185962313	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tatatggtttctttcttttaGacacacattcctcccttctg	4	11	3	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	1	185962313	185962313	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	splice_site	c.3378-1	e23-1	1.000	-	-	-	no_errors	HMCN1	HGNC	ENSG00000143341	91	0	0	104	26	20	-	-	-	C	185962313	G	C	185962313	5	2	93	1	0	0	0	0	0	0	1	0	7271	956	33	2	3467	2	HMCN1	1	185962313	Splice_Site	SNP	G	TCGA-A2-A25C-01A-11D-A167-09		185962313	63288308	1	5986										
ENAH	0	genome.wustl.edu	37	chr1	225707102	225707102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tgccgctccaggcgttcctgCcgttcccgttcttgtctctc	9	17	2	0			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	1	225707102	225707102	C	T	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	silent	c.600	p.R200	0.028	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	73	0	0	94	39	29.1	-	-	-	T	225707102	C	T	225707102	2	4	93	1	0	0	0	0	0	0	0	1	5148	726	26	4		4	ENAH	1	225707102	Silent	SNP	C	TCGA-A2-A25C-01A-11D-A167-09	39744789	225707102	23543519	2	5987										
TTN	0	genome.wustl.edu	37	chr2	179446724	179446724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	gtaacacggaactcatattcGgtaccttcttgaagacctgt	8	10	2	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	2	179446724	179446724	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.58668	p.T19556	0.045	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0	31	17	35.42	-	-	-	A	179446724	G	A	179446724	2	1	93	1	0	0	0	0	0	0	0	1	16832	1103	39	1		1	TTN	2	179446724	Silent	SNP	G	TCGA-A2-A25C-01A-11D-A167-09		179446724	63752649	3	5988										
TTN	0	genome.wustl.edu	37	chr2	179465819	179465819	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	acaggggagcccccatcattCttcgggggtttccatgacag	12	12	2	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	2	179465819	179465819	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.48108	p.K16036N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0	25	4	13.79	-	-	-	A	179465819	C	A	179465819	3	1	93	1	0	0	0	0	1	0	0	0	16832	912	32	2	52181	2	TTN	2	179465819	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09	19095	179465819	63733554	4	5989										
CP	0	genome.wustl.edu	37	chr3	148930428	148930428	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tactgaagataaagggccttCttatatagtctcccaattct	6	9	3	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	3	148930428	148930428	C	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.204	p.K68N	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	37	0	0	37	22	37.29	-	-	-	A	148930428	C	A	148930428	3	1	93	1	0	0	0	0	1	0	0	0	3817	912	32	2	3065	2	CP	3	148930428	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09		148930428	49092002	5	5990										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	54	0	0	23	16	41.03	-	-	-	G	178952085	A	G	178952085	3	3	93	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A25C-01A-11D-A167-09	30021657	178952085	19070345	6	5991										
CPE	0	genome.wustl.edu	37	chr4	166403460	166403460	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	cttttgtgctttctgccaatCtccatggaggagaccttgtg	10	10	2	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	4	166403460	166403460	C	T	SNP	CPE	ENST00000402744	human	ensembl	69_37n	1	known	missense	c.739	p.L247F	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPE	HGNC	ENSG00000109472	77	0	0	40	18	31.03	-	-	-	T	166403460	C	T	166403460	3	4	93	1	0	0	0	0	1	0	0	0	3829	913	32	2	753	2	CPE	4	166403460	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09		166403460	24750816	7	5992										
MCTP1	0	genome.wustl.edu	37	chr5	94289001	94289001	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	acagggttgaggttcttgtgTattatcttacttctaaaaac	8	6	3	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	5	94289001	94289001	T	C	SNP	MCTP1	ENST00000515393	human	ensembl	69_37n	-1	known	missense	c.903	p.I301M	0.999	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	80	0	0	66	18	21.43	-	-	-	C	94289001	T	C	94289001	3	2	93	1	0	0	0	0	1	0	0	0	9471	1628	57	5	2180	5	MCTP1	5	94289001	Missense_Mutation	SNP	T	TCGA-A2-A25C-01A-11D-A167-09		94289001	86626259	8	5993										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801420	140801420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	ccgagagaaagaggctgctcAcctgctcctcctcacagctt	9	15	2	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	5	140801420	140801420	A	G	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.626	p.H209R	0.138	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	16	0	0	12	5	29.41	-	-	-	G	140801420	A	G	140801420	3	3	93	1	0	0	0	0	1	0	0	0	11625	159	6	5	628	5	PCDHGA11	5	140801420	Missense_Mutation	SNP	A	TCGA-A2-A25C-01A-11D-A167-09	46512419	140801420	40113840	9	5994										
EEF1A1	0	genome.wustl.edu	37	chr6	74229730	74229730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	caatgacgacaatgttgataTgagtcttttcctttcccatt	6	9	1	3			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	6	74229730	74229730	T	C	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.20	p.H7R	1.000	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	34	0	0	31	13	29.55	-	-	-	C	74229730	T	C	74229730	3	2	93	1	0	0	0	0	1	0	0	0	4958	1464	51	5	1396	5	EEF1A1	6	74229730	Missense_Mutation	SNP	T	TCGA-A2-A25C-01A-11D-A167-09		74229730	96885337	10	5995										
AKAP7	0	genome.wustl.edu	37	chr6	131602771	131602771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	ctgtccagcagtatctggagGaaacacagaataaaaacaag	9	8	1	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	6	131602771	131602771	G	A	SNP	AKAP7	ENST00000368123	human	ensembl	69_37n	1	known	missense	c.886	p.E296K	1.000	pfam_Kinase-A_anchor_RI-RII-bd_dom	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507	34	0	0	18	16	47.06	-	-	-	A	131602771	G	A	131602771	3	1	93	1	0	0	0	0	1	0	0	0	456	1175	41	2	1038	2	AKAP7	6	131602771	Missense_Mutation	SNP	G	TCGA-A2-A25C-01A-11D-A167-09	57373041	131602771	39512296	11	5996										
MED23	0	genome.wustl.edu	37	chr6	131921249	131921249	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	agtgaaactcatgatggtctGaagtatgtctttacaccaag	9	7	3	3			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	6	131921249	131921249	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.2167	p.Q723*	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	43	0	0	13	17	56.67	-	-	-	A	131921249	G	A	131921249	4	1	93	1	0	0	0	0	0	1	0	0	9512	1299	45	2	2012	2	MED23	6	131921249	Nonsense_Mutation	SNP	G	TCGA-A2-A25C-01A-11D-A167-09	318478	131921249	39193818	12	5997										
PLXNA4	0	genome.wustl.edu	37	chr7	132169630	132169630	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	aaagcagaggctggactctcTgatctgatattgctttgtga	11	7	2	4			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	7	132169630	132169630	T	A	SNP	PLXNA4	ENST00000378539	human	ensembl	69_37n	-1	known	missense	c.1514	p.Q505L	0.003	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	39	0	0	23	7	23.33	-	-	-	A	132169630	T	A	132169630	3	1	93	1	0	0	0	0	1	0	0	0	12196	1580	55	5	4600	5	PLXNA4	7	132169630	Missense_Mutation	SNP	T	TCGA-A2-A25C-01A-11D-A167-09		132169630	26969033	13	5998										
KIAA1147	0	genome.wustl.edu	37	chr7	141365078	141365078	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tcaggaatggtgcccccgatGccaggcagtgaaacgttggc	14	11	1	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	7	141365078	141365078	G	A	SNP	KIAA1147	ENST00000536163	human	ensembl	69_37n	-1	known	silent	c.861	p.G287	0.996	pfam_DUF2347	pfam_DUF2347	-	no_errors	KIAA1147	HGNC	ENSG00000257093	39	0	0	25	14	35.9	-	-	-	A	141365078	G	A	141365078	2	1	93	1	0	0	0	0	0	0	0	1	8262	1306	46	4		4	KIAA1147	7	141365078	Silent	SNP	G	TCGA-A2-A25C-01A-11D-A167-09	9195448	141365078	17773585	14	5999										
KCNK9	0	genome.wustl.edu	37	chr8	140715207	140715207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tgaaggtgcagacgatgaggGacagagtccgcacgttctgc	15	9	1	4			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	8	140715207	140715207	G	A	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.29	p.S10F	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	12	0	0	8	5	35.71	-	-	-	A	140715207	G	A	140715207	3	1	93	1	0	0	0	0	1	0	0	0	8126	1174	41	2	1103	2	KCNK9	8	140715207	Missense_Mutation	SNP	G	TCGA-A2-A25C-01A-11D-A167-09		140715207	5648815	15	6000										
OR1J1	0	genome.wustl.edu	37	chr9	125240172	125240172	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	ggggaggcccaggaggaggaActcggacacgctgctctggt	18	10	1	0			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	9	125240172	125240172	A	G	SNP	OR1J1	ENST00000259357	human	ensembl	69_37n	-1	known	missense	c.34	p.F12L	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J1	HGNC	ENSG00000136834	50	0	0	35	14	28.57	-	-	-	G	125240172	A	G	125240172	3	3	93	1	0	0	0	0	1	0	0	0	11032	43	2	5	937	5	OR1J1	9	125240172	Missense_Mutation	SNP	A	TCGA-A2-A25C-01A-11D-A167-09		125240172	15973259	16	6001										
OR8A1	0	genome.wustl.edu	37	chr11	124440230	124440230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tctgtcactcatggatctctGctactcctccgtcattaccc	5	16	5	0			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	11	124440230	124440230	G	A	SNP	OR8A1	ENST00000284287	human	ensembl	69_37n	1	known	missense	c.266	p.C89Y	0.999	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8A1	HGNC	ENSG00000196119	72	0	0	37	9	19.57	-	-	-	A	124440230	G	A	124440230	3	1	93	1	0	0	0	0	1	0	0	0	11298	1319	46	4	268	4	OR8A1	11	124440230	Missense_Mutation	SNP	G	TCGA-A2-A25C-01A-11D-A167-09		124440230	10566286	17	6002										
RNF6	0	genome.wustl.edu	37	chr13	26788550	26788550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	gagaactcagttctccaaacCcagtcatgatctgccttaaa	6	12	4	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	13	26788550	26788550	C	T	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	missense	c.1469	p.G490E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	45	0	0	28	24	46.15	-	-	-	T	26788550	C	T	26788550	3	4	93	1	0	0	0	0	1	0	0	0	13584	623	22	4	592	4	RNF6	13	26788550	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09		26788550	88381328	18	6003										
PCNX	0	genome.wustl.edu	37	chr14	71445273	71445273	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	gctatctttattaggacgggCttcccagttagagacagtca	10	9	2	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	14	71445273	71445273	C	A	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.2219	p.A740D	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	29	0	0	35	6	14.63	-	-	-	A	71445273	C	A	71445273	3	1	93	1	0	0	0	0	1	0	0	0	11664	797	28	4	2241	4	PCNX	14	71445273	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09		71445273	35904267	19	6004										
KCNK13	0	genome.wustl.edu	37	chr14	90650606	90650606	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	atcatgaagtcgtgccaccaGcggcagctccggagacgagg	14	12	1	2			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	14	90650606	90650606	G	T	SNP	KCNK13	ENST00000282146	human	ensembl	69_37n	1	known	missense	c.486	p.Q162H	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315	50	0	0	40	8	16.67	-	-	-	T	90650606	G	T	90650606	3	4	93	1	0	0	0	0	1	0	0	0	8115	962	34	4	492	4	KCNK13	14	90650606	Missense_Mutation	SNP	G	TCGA-A2-A25C-01A-11D-A167-09	19205333	90650606	16698934	20	6005										
ZNF473	0	genome.wustl.edu	37	chr19	50548576	50548576	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	cacactggagaaaaaccatgTaagagtcaagatagtgacca	9	8	1	4			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	19	50548576	50548576	T	C	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	silent	c.876	p.C292	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	27	0	0	16	13	44.83	-	-	-	C	50548576	T	C	50548576	2	2	93	1	0	0	0	0	0	0	0	1	18027	1644	57	5		5	ZNF473	19	50548576	Silent	SNP	T	TCGA-A2-A25C-01A-11D-A167-09		50548576	8580407	21	6006										
NCAM2	0	genome.wustl.edu	37	chr21	22881175	22881175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	tttttttactttttaagacaCgctgtttaatggtcttgggc	8	6	1	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	21	22881175	22881175	C	T	SNP	NCAM2	ENST00000400546	human	ensembl	69_37n	1	known	missense	c.2081	p.T694M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	32	0	0	19	8	29.63	-	-	-	T	22881175	C	T	22881175	3	4	93	1	0	0	0	0	1	0	0	0	10275	536	19	1	2143	1	NCAM2	21	22881175	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09		22881175	25248720	22	6007										
WDR4	0	genome.wustl.edu	37	chr21	44282454	44282454	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.130434782608696	3	0.664648933878084	1.47272727272727	5.4	1.08	1	1	0	gcggcccagctgactcggatCttctcgtcccggtcggcagt	13	15	2	1			TCGA-A2-A25C-01A-11D-A167-09	TCGA-A2-A25C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2411fc4a-c0d7-4a60-a861-f4d954ef1ed5	68b035a9-7582-43b2-9a33-cda050ee234f	21	44282454	44282454	C	A	SNP	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	missense	c.504	p.K168N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	11	0	0	9	5	35.71	-	-	-	A	44282454	C	A	44282454	3	1	93	1	0	0	0	0	1	0	0	0	17390	912	32	2	762	2	WDR4	21	44282454	Missense_Mutation	SNP	C	TCGA-A2-A25C-01A-11D-A167-09	21401279	44282454	3847441	23	6008										
UBR4	0	genome.wustl.edu	37	chr1	19518987	19518987	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	cttcttacctcaccaccagcCcggcgagaactgctgattgc	8	16	2	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	19518987	19518987	C	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.1191	p.R397	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	64	0	0	9	12	57.14	-	-	-	A	19518987	C	A	19518987	2	1	94	1	0	0	0	0	0	0	0	1	17001	610	22	4		4	UBR4	1	19518987	Silent	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		19518987	229731634	1	6009										
C1QA	0	genome.wustl.edu	37	chr1	22965464	22965464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tggcatcccgggaattaaagGcaccaagggcagcccaggaa	13	11	0	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	22965464	22965464	G	A	SNP	C1QA	ENST00000374642	human	ensembl	69_37n	1	known	missense	c.302	p.G101D	0.997	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QA	HGNC	ENSG00000173372	34	0	0	19	10	34.48	-	-	-	A	22965464	G	A	22965464	3	1	94	1	0	0	0	0	1	0	0	0	1973	1203	42	4	308	4	C1QA	1	22965464	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	3446477	22965464	226285157	2	6010										
SRRM1	0	genome.wustl.edu	37	chr1	24972547	24972547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tgaagcagctgaaatttgcaGaatgcctagaaaaaaaggta	10	5	0	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	24972547	24972547	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	missense	c.94	p.E32K	1.000	superfamily_PWI	pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	77	0	0	36	10	21.74	-	-	-	A	24972547	G	A	24972547	3	1	94	1	0	0	0	0	1	0	0	0	15259	943	33	2	100	2	SRRM1	1	24972547	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	2007083	24972547	224278074	3	6011										
IGSF3	0	genome.wustl.edu	37	chr1	117131545	117131545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	taagtaccgtattcaaaggcGgagttgtgggtggtcttcag	14	6	3	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	117131545	117131545	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	silent	c.2271	p.S757	0.887	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	53	0	0	26	12	31.58	-	-	-	A	117131545	G	A	117131545	2	1	94	1	0	0	0	0	0	0	0	1	7655	1103	39	1		1	IGSF3	1	117131545	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	92158998	117131545	132119076	4	6012										
LBR	0	genome.wustl.edu	37	chr1	225609856	225609856	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ctggtgggaagcagaagcagAtcggcgggcacttttaggtg	17	7	0	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	225609856	225609856	A	C	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.289	p.S97A	0.000	NULL	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	35	0	0	63	9	12.5	-	-	-	C	225609856	A	C	225609856	3	2	94	1	0	0	0	0	1	0	0	0	8706	333	12	5	1606	5	LBR	1	225609856	Missense_Mutation	SNP	A	TCGA-A2-A25D-01A-12D-A16D-09	108478311	225609856	23640765	5	6013										
GTF3C2	0	genome.wustl.edu	37	chr2	27551716	27551716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gaaaggggggctcacccaaaCggtgccttttcgaggagcag	15	10	1	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	27551716	27551716	C	T	SNP	GTF3C2	ENST00000264720	human	ensembl	69_37n	-1	known	missense	c.2122	p.V708I	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207	54	0	0	19	9	32.14	-	-	-	T	27551716	C	T	27551716	3	4	94	1	0	0	0	0	1	0	0	0	6924	536	19	1	633	1	GTF3C2	2	27551716	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		27551716	215647657	6	6014										
LTBP1	0	genome.wustl.edu	37	chr2	33585833	33585833	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tgcgaaatcttcccctgcccGgtcttgggaactggtaagaa	11	11	2	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	33585833	33585833	G	T	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	silent	c.4173	p.P1391	0.005	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	45	0	0	29	13	30.95	-	-	-	T	33585833	G	T	33585833	2	4	94	1	0	0	0	0	0	0	0	1	9139	1103	39	3		3	LTBP1	2	33585833	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	6034117	33585833	209613540	7	6015										
PROKR1	0	genome.wustl.edu	37	chr2	68882542	68882542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gagcaacagcatgatcaacaCtctgtgcttcgtgaccgtca	9	12	3	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	68882542	68882542	C	T	SNP	PROKR1	ENST00000303786	human	ensembl	69_37n	1	known	missense	c.1016	p.T339I	0.997	prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PROKR1	HGNC	ENSG00000169618	83	0	0	39	12	23.53	-	-	-	T	68882542	C	T	68882542	3	4	94	1	0	0	0	0	1	0	0	0	12633	565	20	4	1022	4	PROKR1	2	68882542	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	35296709	68882542	174316831	8	6016										
ALMS1	0	genome.wustl.edu	37	chr2	73635817	73635817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	caatagtagaacacaaatttCtgatactaatgtggtctgtt	7	6	2	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	73635817	73635817	C	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.392	p.S131C	0.535	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	148	0	0	72	31	30.1	-	-	-	G	73635817	C	G	73635817	3	3	94	1	0	0	0	0	1	0	0	0	535	913	32	2	398	2	ALMS1	2	73635817	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	4753275	73635817	169563556	9	6017										
CWC22	0	genome.wustl.edu	37	chr2	180858042	180858042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tttaagtttcaaacacttacTtttatctgtgccacactact	3	10	2	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	180858042	180858042	T	G	SNP	CWC22	ENST00000295749	human	ensembl	69_37n	-1	known	missense	c.27	p.K9N	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	210	0	0	146	55	27.36	-	-	-	G	180858042	T	G	180858042	3	3	94	1	0	0	0	0	1	0	0	0	4099	1623	56	5	2775	5	CWC22	2	180858042	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	107222225	180858042	62341331	10	6018										
COL6A3	0	genome.wustl.edu	37	chr2	238277616	238277616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gtatggcgtccagcaccgggGcctgggatctgtaggttttc	15	10	1	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	238277616	238277616	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.4490	p.A1497V	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	56	0	0	40	18	31.03	-	-	-	A	238277616	G	A	238277616	3	1	94	1	0	0	0	0	1	0	0	0	3731	1203	42	4	5183	4	COL6A3	2	238277616	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	57419574	238277616	4921757	11	6019										
OR5H1	0	genome.wustl.edu	37	chr3	97852403	97852403	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tcattcctttgttaaatcctAtcatctacagtctgagaaat	4	9	4	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	97852403	97852403	A	G	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.862	p.I288V	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	120	0	0	72	34	32.08	-	-	-	G	97852403	A	G	97852403	3	3	94	1	0	0	0	0	1	0	0	0	11232	449	16	5	864	5	OR5H1	3	97852403	Missense_Mutation	SNP	A	TCGA-A2-A25D-01A-12D-A16D-09		97852403	100170027	12	6020										
ATR	0	genome.wustl.edu	37	chr3	142234359	142234359	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	cttctgagaactcttgtatcTgtaattttgaaaatttgttt	6	5	3	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	142234359	142234359	T	C	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	splice_site	c.4383-2	e25-2	1.000	-	-	-	no_errors	ATR	HGNC	ENSG00000175054	47	0	0	51	14	21.54	-	-	-	C	142234359	T	C	142234359	5	2	94	1	0	0	0	0	0	0	1	0	1208	1594	55	5	3645	5	ATR	3	142234359	Splice_Site	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	44381956	142234359	55788071	13	6021										
PLD1	0	genome.wustl.edu	37	chr3	171406629	171406629	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tctcatggtgagcccacaaaTagacggtggatgacacatga	11	9	1	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	171406629	171406629	T	C	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.1376	p.Y459C	0.996	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_PLipase_D/transphosphatidylase	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	49	0	0	23	6	20.69	-	-	-	C	171406629	T	C	171406629	3	2	94	1	0	0	0	0	1	0	0	0	12119	1406	49	5	1904	5	PLD1	3	171406629	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	29172270	171406629	26615801	14	6022										
PIK3CA	0	genome.wustl.edu	37	chr3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-													0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ttgaaccagtaggcaaccgtGaagaaaagatcctcaatcga							TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	178916938	178916940	GAA	-	DEL	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	in_frame_del	c.325_327	p.E110in_frame_del	1.000:1.000:1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	47	0	0	34	19	35.85	-	-	-	-	178916940	GAA	-	178916938	7	5	94	1	0	1	0	1	0	0	0	0	11987	1291	45	0	327	0	PIK3CA	3	178916938	In_Frame_Del	DEL	GAA	TCGA-A2-A25D-01A-12D-A16D-09	7510309	178916938	19105492	15	6023										
ATP10D	0	genome.wustl.edu	37	chr4	47560135	47560135	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ggtggactttgctgctttggGaccattaacatttcaactcc	9	10	1	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	47560135	47560135	G	C	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.2279	p.G760A	0.998	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	84	0	0	33	16	32.65	-	-	-	C	47560135	G	C	47560135	3	2	94	1	0	0	0	0	1	0	0	0	1122	1174	41	2	2321	2	ATP10D	4	47560135	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		47560135	143594141	16	6024										
NEUROG2	0	genome.wustl.edu	37	chr4	113436099	113436099	+	Frame_Shift_Del	DEL	C	C	-													0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gcgcccccggcaggcccccgCcgccgcccccgcagtgatcc							TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	113436099	113436099	C	-	DEL	NEUROG2	ENST00000313341	human	ensembl	69_37n	-1	known	frame_shift_del	c.533	p.G178fs	0.949	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	NEUROG2	HGNC	ENSG00000178403	17	0	0	7	4	30.77	-	-	-	-	113436099	C	-	113436099	7	5	94	1	0	1	0	1	0	0	0	0	10425	739	26	0	289	0	NEUROG2	4	113436099	Frame_Shift_Del	DEL	C	TCGA-A2-A25D-01A-12D-A16D-09	65875964	113436099	77718177	17	6025										
GUCY1B3	0	genome.wustl.edu	37	chr4	156724917	156724917	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tagatggtgaatctgttcagGttagtaaatgaagtagatat	11	2	2	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	156724917	156724917	G	A	SNP	GUCY1B3	ENST00000264424	human	ensembl	69_37n	1	known	splice_site	c.1554+1	e11+1	1.000	-	-	-	no_errors	GUCY1B3	HGNC	ENSG00000061918	44	0	0	28	7	20	-	-	-	A	156724917	G	A	156724917	5	1	94	1	0	0	0	0	0	0	1	0	6946	1275	44	4	1597	4	GUCY1B3	4	156724917	Splice_Site	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	43288818	156724917	34429359	18	6026										
PRLR	0	genome.wustl.edu	37	chr5	35072754	35072754	+	Frame_Shift_Del	DEL	G	G	-													0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	accagtttttaagtcaatcaGggtaggtggagaccatttaa							TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	35072754	35072754	G	-	DEL	PRLR	ENST00000382002	human	ensembl	69_37n	-1	known	frame_shift_del	c.466	p.L156fs	0.018	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PRLR	HGNC	ENSG00000113494	119	0	0	73	32	30.19	-	-	-	-	35072754	G	-	35072754	7	5	94	1	0	1	0	1	0	0	0	0	12612	991	35	0	1422	0	PRLR	5	35072754	Frame_Shift_Del	DEL	G	TCGA-A2-A25D-01A-12D-A16D-09		35072754	145842506	19	6027										
PSD2	0	genome.wustl.edu	37	chr5	139193009	139193009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gcagcctcgactccctagacGggctgagcctcacggatgag	13	14	1	3			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	139193009	139193009	G	A	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	missense	c.487	p.G163R	1.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	20	0	0	16	5	23.81	-	-	-	A	139193009	G	A	139193009	3	1	94	1	0	0	0	0	1	0	0	0	12727	1116	39	1	493	1	PSD2	5	139193009	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	104120255	139193009	41722251	20	6028										
PCDHA12	0	genome.wustl.edu	37	chr5	140255068	140255068	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	attttctgcaatggtgattaTcggaccaagaggcccgggat	12	8	1	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	140255068	140255068	T	C	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	missense	c.11	p.I4T	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	65	0	0	38	9	19.15	-	-	-	C	140255068	T	C	140255068	3	2	94	1	0	0	0	0	1	0	0	0	11595	1435	50	5	13	5	PCDHA12	5	140255068	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	1062059	140255068	40660192	21	6029										
ELOVL5	0	genome.wustl.edu	37	chr6	53133926	53133926	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gggtttcaattctttgacttCaatccttccgcagcttcctt	6	12	3	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	6	53133926	53133926	C	T	SNP	ELOVL5	ENST00000541407	human	ensembl	69_37n	-1	known	silent	c.980	p.*327	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660	119	0	0	65	23	26.14	-	-	-	T	53133926	C	T	53133926	2	4	94	1	0	0	0	0	0	0	0	1	5114	837	29	2		2	ELOVL5	6	53133926	Silent	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		53133926	117981141	22	6030										
DDX58	0	genome.wustl.edu	37	chr9	32459494	32459494	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	atctctgatgaatttttcatGagtctgtatatgcagaatct	7	6	4	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	9	32459494	32459494	G	A	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	missense	c.2356	p.H786Y	0.006	NULL	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	254	0	0	177	109	37.98	-	-	-	A	32459494	G	A	32459494	3	1	94	1	0	0	0	0	1	0	0	0	4406	1290	45	2	429	2	DDX58	9	32459494	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		32459494	108753937	23	6031										
ADAMTS13	0	genome.wustl.edu	37	chr9	136324188	136324189	+	Frame_Shift_Ins	INS	-	-	A													0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gccaggctgagatggagttcINSagcgagggcttcctgaaggc							TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	9	136324188	136324189	-	A	INS	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	frame_shift_ins	c.4170_4171	p.S1390fs	0.518:0.519	superfamily_CUB	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	19	0	0	11	11	50	-	-	-	A	136324189	-	A	136324188	7	5	94	1	0	1	1	0	0	0	0	0	258	825	29	0	4284	0	ADAMTS13	9	136324188	Frame_Shift_Ins	INS	-	TCGA-A2-A25D-01A-12D-A16D-09	103864694	136324188	4889243	24	6032										
OR2AG2	0	genome.wustl.edu	37	chr11	6789589	6789589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aggaaagtcacacctgtcacGtatattataagctcatacct	6	10	3	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	11	6789589	6789589	G	A	SNP	OR2AG2	ENST00000338569	human	ensembl	69_37n	-1	novel	silent	c.600	p.Y200	0.018	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124	71	0	0	34	13	27.66	-	-	-	A	6789589	G	A	6789589	2	1	94	1	0	0	0	0	0	0	0	1	11058	1140	40	1		1	OR2AG2	11	6789589	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		6789589	128216927	25	6033										
ABCC8	0	genome.wustl.edu	37	chr11	17434216	17434216	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	agggaacttgcactcaccaaGaagacaacgttggcgtgctg	12	10	1	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	11	17434216	17434216	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	silent	c.2556	p.F852	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	43	0	0	20	9	31.03	-	-	-	A	17434216	G	A	17434216	2	1	94	1	0	0	0	0	0	0	0	1	58	933	33	2		2	ABCC8	11	17434216	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	10644627	17434216	117572300	26	6034										
IQSEC3	0	genome.wustl.edu	37	chr12	266274	266274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ggcacacatccgtgtgcaggGggaggctcagaaggtggagc	18	9	1	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	266274	266274	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.2237	p.G746E	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	30	0	0	14	11	44	-	-	-	A	266274	G	A	266274	3	1	94	1	0	0	0	0	1	0	0	0	7873	1232	43	4	2259	4	IQSEC3	12	266274	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		266274	133585621	27	6035										
ITPR2	0	genome.wustl.edu	37	chr12	26755633	26755633	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ctgcactggacttaaaatgtTtgattcctaaaaggaacaca	7	8	0	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	26755633	26755633	T	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.3469	p.N1157D	0.865	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	170	0	0	93	49	34.51	-	-	-	C	26755633	T	C	26755633	3	2	94	1	0	0	0	0	1	0	0	0	7975	1841	64	5	4760	5	ITPR2	12	26755633	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	26489359	26755633	107096262	28	6036										
SLC38A2	0	genome.wustl.edu	37	chr12	46754960	46754960	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aaggccatgcttccggtcatCaccagtacaccacttaacag	7	14	2	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	46754960	46754960	C	T	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	silent	c.1455	p.V485	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	69	0	0	44	20	31.25	-	-	-	T	46754960	C	T	46754960	2	4	94	1	0	0	0	0	0	0	0	1	14693	813	29	2		2	SLC38A2	12	46754960	Silent	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	19999327	46754960	87096935	29	6037										
ESPL1	0	genome.wustl.edu	37	chr12	53670885	53670885	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	agctctgctctggatgctatCcgggaagccctgcagcttct	11	13	3	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	53670885	53670885	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	silent	c.1959	p.I653	0.997	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	22	0	0	7	6	46.15	-	-	-	A	53670885	C	A	53670885	2	1	94	1	0	0	0	0	0	0	0	1	5290	845	30	2		2	ESPL1	12	53670885	Silent	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	6915925	53670885	80181010	30	6038										
CDK2	0	genome.wustl.edu	37	chr12	56362611	56362611	+	Frame_Shift_Del	DEL	G	G	-													0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	agctttctgccattctcatcGggtcctccaccgagacctta							TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	56362611	56362611	G	-	DEL	CDK2	ENST00000266970	human	ensembl	69_37n	1	known	frame_shift_del	c.365	p.V123fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK2	HGNC	ENSG00000123374	112	0	0	78	26	25	-	-	-	-	56362611	G	-	56362611	7	5	94	1	0	1	0	1	0	0	0	0	3165	1116	39	0	379	0	CDK2	12	56362611	Frame_Shift_Del	DEL	G	TCGA-A2-A25D-01A-12D-A16D-09	2691726	56362611	77489284	31	6039										
MYH6	0	genome.wustl.edu	37	chr14	23858706	23858706	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	cgcctccttttcctctagctGccgggccaactctcctggag	9	17	2	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	14	23858706	23858706	G	A	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	nonsense	c.3874	p.Q1292*	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	62	0	0	51	15	22.73	-	-	-	A	23858706	G	A	23858706	4	1	94	1	0	0	0	0	0	1	0	0	10110	1328	46	4	1993	4	MYH6	14	23858706	Nonsense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		23858706	83490834	32	6040										
DDX24	0	genome.wustl.edu	37	chr14	94524189	94524189	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tggtaatggatgacatgctgGactttaggaatatccagacc	11	7	0	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	14	94524189	94524189	G	T	SNP	DDX24	ENST00000330836	human	ensembl	69_37n	-1	known	silent	c.1968	p.V656	0.977	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737	37	0	0	22	8	26.67	-	-	-	T	94524189	G	T	94524189	2	4	94	1	0	0	0	0	0	0	0	1	4382	1161	41	2		2	DDX24	14	94524189	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	70665483	94524189	12825351	33	6041										
ZFP106	0	genome.wustl.edu	37	chr15	42743987	42743987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	tttttcctagtattattaaaGccatctttttcccatttcca	2	10	1	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	15	42743987	42743987	G	A	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	silent	c.414	p.G138	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	70	0	0	68	11	13.92	-	-	-	A	42743987	G	A	42743987	2	1	94	1	0	0	0	0	0	0	0	1	17733	958	34	4		4	ZFP106	15	42743987	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		42743987	59787405	34	6042										
SEPT12	0	genome.wustl.edu	37	chr16	4835875	4835875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	cgtcagcttcagcttcacacCcttctcctctatgactgtgg	7	15	5	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	16	4835875	4835875	C	T	SNP	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	missense	c.307	p.G103S	0.999	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	65	0	0	37	11	22.45	-	-	-	T	4835875	C	T	4835875	3	4	94	1	0	0	0	0	1	0	0	0	14150	623	22	4	797	4	SEPT12	16	4835875	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		4835875	85518878	35	6043										
SEPT1	0	genome.wustl.edu	37	chr16	30393472	30393472	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gtgaggaagaggctgttgatGagggtggatttccctaggcc	17	6	0	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	16	30393472	30393472	G	C	SNP	SEPT1	ENST00000321367	human	ensembl	69_37n	-1	known	silent	c.138	p.L46	1.000	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	41	0	0	16	10	38.46	-	-	-	C	30393472	G	C	30393472	2	2	94	1	0	0	0	0	0	0	0	1	14147	1277	45	2		2	SEPT1	16	30393472	Silent	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09	25557597	30393472	59961281	36	6044										
MMP28	0	genome.wustl.edu	37	chr17	34105965	34105965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aagtcactgatcctctcagcCcaggccgcataactgttggt	9	13	2	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	34105965	34105965	C	A	SNP	MMP28	ENST00000587639	human	ensembl	69_37n	-1	known	missense	c.306	p.W102C	0.997	NULL	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	-	no_errors	MMP28	HGNC	ENSG00000129270	72	0	0	45	10	18.18	-	-	-	A	34105965	C	A	34105965	3	1	94	1	0	0	0	0	1	0	0	0	9737	624	22	4	1293	4	MMP28	17	34105965	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		34105965	47089245	37	6045										
FBF1	0	genome.wustl.edu	37	chr17	73924235	73924235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gctaggggctgaattagattTcttcagacctaagatatcag	10	7	3	4			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	73924235	73924235	T	C	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.277	p.K93E	0.975	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	86	0	0	70	20	22.22	-	-	-	C	73924235	T	C	73924235	3	2	94	1	0	0	0	0	1	0	0	0	5741	1792	62	5	3216	5	FBF1	17	73924235	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	39818270	73924235	7270975	38	6046										
ENPP7	0	genome.wustl.edu	37	chr17	77705092	77705092	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	ggcccgagacggggtgaaggCacgctacatgacccccgcct	14	15	0	3			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	77705092	77705092	C	A	SNP	ENPP7	ENST00000328313	human	ensembl	69_37n	1	known	missense	c.191	p.A64E	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156	23	0	0	27	5	15.62	-	-	-	A	77705092	C	A	77705092	3	1	94	1	0	0	0	0	1	0	0	0	5172	710	25	4	193	4	ENPP7	17	77705092	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	3780857	77705092	3490118	39	6047										
LAMA1	0	genome.wustl.edu	37	chr18	7042194	7042194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	taatacagacagaactgaggGaccccacagggtcacaatta	9	10	1	3			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	7042194	7042194	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.1211	p.S404F	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	25	0	0	19	8	28.57	-	-	-	A	7042194	G	A	7042194	3	1	94	1	0	0	0	0	1	0	0	0	8659	1174	41	2	8236	2	LAMA1	18	7042194	Missense_Mutation	SNP	G	TCGA-A2-A25D-01A-12D-A16D-09		7042194	71035054	40	6048										
APCDD1	0	genome.wustl.edu	37	chr18	10487617	10487617	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gaaggtcacccccatggatgCggccacagcctcactgctca	10	16	3	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	10487617	10487617	C	A	SNP	APCDD1	ENST00000578882	human	ensembl	69_37n	1	novel	nonsense	c.516	p.C172*	0.008	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	36	0	0	12	5	29.41	-	-	-	A	10487617	C	A	10487617	4	1	94	1	0	0	0	0	0	1	0	0	766	768	27	3	1145	3	APCDD1	18	10487617	Nonsense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	3445423	10487617	67589631	41	6049										
MUC16	0	genome.wustl.edu	37	chr19	9060763	9060763	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gcttgtgtccaacatgtctgTggtcttcatcatgacagggg	12	9	4	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	9060763	9060763	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.26683	p.T8895P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	110	1	0.9	37	24	39.34	-	-	-	G	9060763	T	G	9060763	3	3	94	1	0	0	0	0	1	0	0	0	10045	1696	59	5	17168	5	MUC16	19	9060763	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09		9060763	50068220	42	6050										
LPPR2	0	genome.wustl.edu	37	chr19	11470279	11470279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gacaccttccctgtgcacacCcagggattcttctgctatga	8	14	2	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	11470279	11470279	C	T	SNP	LPPR2	ENST00000251473	human	ensembl	69_37n	1	known	silent	c.138	p.T46	0.974	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	48	0	0	23	10	29.41	-	-	-	T	11470279	C	T	11470279	2	4	94	1	0	0	0	0	0	0	0	1	8991	610	22	4		4	LPPR2	19	11470279	Silent	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09	2409516	11470279	47658704	43	6051										
ZNF208	0	genome.wustl.edu	37	chr19	22154320	22154320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	acaaagcctttgccacattcTtcacatttgtagggtttctc	6	11	3	0			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	22154320	22154320	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.3516	p.E1172D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	16	0	0	23	5	17.86	-	-	-	G	22154320	T	G	22154320	3	3	94	1	0	0	0	0	1	0	0	0	17862	1606	56	5	330	5	ZNF208	19	22154320	Missense_Mutation	SNP	T	TCGA-A2-A25D-01A-12D-A16D-09	10684041	22154320	36974663	44	6052										
ZNF780A	0	genome.wustl.edu	37	chr19	40581727	40581727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aaatttctgatgtcgagtaaAttgtatgtgaagtcgaaagg	11	3	1	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	40581727	40581727	A	C	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	missense	c.625	p.F209V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	102	0	0	73	25	25.51	-	-	-	C	40581727	A	C	40581727	3	2	94	1	0	0	0	0	1	0	0	0	18245	101	4	5	1434	5	ZNF780A	19	40581727	Missense_Mutation	SNP	A	TCGA-A2-A25D-01A-12D-A16D-09	18427407	40581727	18547256	45	6053										
GZF1	0	genome.wustl.edu	37	chr20	23345750	23345750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aaaagaaatatacgagaagaCtccgagagcagcagaaaact	9	7	0	5			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	23345750	23345750	C	A	SNP	GZF1	ENST00000338121	human	ensembl	69_37n	1	known	missense	c.730	p.L244I	0.273	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	34	0	0	18	8	30.77	-	-	-	A	23345750	C	A	23345750	3	1	94	1	0	0	0	0	1	0	0	0	6965	565	20	4	732	4	GZF1	20	23345750	Missense_Mutation	SNP	C	TCGA-A2-A25D-01A-12D-A16D-09		23345750	39679770	46	6054										
KIAA1755	0	genome.wustl.edu	37	chr20	36841476	36841476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	aaggggacttgtctggggtgAgtcctcaagggatgtctgtg	17	6	3	1			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	36841476	36841476	A	G	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.3571	p.S1191P	0.998	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	19	0	0	10	4	28.57	-	-	-	G	36841476	A	G	36841476	3	3	94	1	0	0	0	0	1	0	0	0	8309	304	11	5	35	5	KIAA1755	20	36841476	Missense_Mutation	SNP	A	TCGA-A2-A25D-01A-12D-A16D-09	13495726	36841476	26184044	47	6055										
SEMG2	0	genome.wustl.edu	37	chr20	43851070	43851070	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145833333333333	7	0.234028692705567	1.8564263322884	3.88965517241379	1.53539019963702	0.286130536130536	0.930327025915261	0	gctcctagtatataacaagaAtcaacaccagacaaaaaatc	4	10	1	2			TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	43851070	43851070	A	T	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	missense	c.797	p.N266I	0.001	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	74	0	0	31	16	34.04	-	-	-	T	43851070	A	T	43851070	3	4	94	1	0	0	0	0	1	0	0	0	14133	101	4	5	803	5	SEMG2	20	43851070	Missense_Mutation	SNP	A	TCGA-A2-A25D-01A-12D-A16D-09	7009594	43851070	19174450	48	6056										
MAP3K6	0	genome.wustl.edu	37	chr1	27682955	27682955	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gcccgctgcaccagggcctgGtactcccgttccttccccgc	10	20	0	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	27682955	27682955	G	C	SNP	MAP3K6	ENST00000357582	human	ensembl	69_37n	-1	known	nonsense	c.3561	p.Y1187*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	21	0	0	10	10	50	-	-	-	C	27682955	G	C	27682955	4	2	95	1	0	0	0	0	0	1	0	0	9325	1256	44	4	321	4	MAP3K6	1	27682955	Nonsense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		27682955	221567666	1	6057										
USP1	0	genome.wustl.edu	37	chr1	62905637	62905637	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ttttttcagaaaaaggaaacTaagagagctttggatttcac	8	5	2	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	62905637	62905637	T	G	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	silent	c.99	p.T33	0.997	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	29	0	0	29	19	39.58	-	-	-	G	62905637	T	G	62905637	2	3	95	1	0	0	0	0	0	0	0	1	17137	1509	53	5		5	USP1	1	62905637	Silent	SNP	T	TCGA-A2-A25E-01A-11D-A167-09	35222682	62905637	186344984	2	6058										
ATP1A4	0	genome.wustl.edu	37	chr1	160134150	160134150	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gggctatggttggctggaggCtatcatttttctcattggca	13	7	2	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	160134150	160134150	C	G	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.983	p.A328G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	80	0	0	103	29	21.97	-	-	-	G	160134150	C	G	160134150	3	3	95	1	0	0	0	0	1	0	0	0	1135	797	28	4	1009	4	ATP1A4	1	160134150	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	97228513	160134150	89116471	3	6059										
TNFSF4	0	genome.wustl.edu	37	chr1	173157660	173157660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaacttttgacaatacttacCggtaaattgtactttgatac	5	7	0	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	173157660	173157660	C	T	SNP	TNFSF4	ENST00000281834	human	ensembl	69_37n	-1	known	missense	c.202	p.E68K	0.009	superfamily_Tumour_necrosis_fac-like,smart_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	-	no_errors	TNFSF4	HGNC	ENSG00000117586	50	0	0	70	21	23.08	-	-	-	T	173157660	C	T	173157660	3	4	95	1	0	0	0	0	1	0	0	0	16405	666	23	1	357	1	TNFSF4	1	173157660	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	13023510	173157660	76092961	4	6060										
LIN9	0	genome.wustl.edu	37	chr1	226426761	226426761	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aacaattgttgcatatctccGctgaaattcaatgctgatgg	8	8	2	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	226426761	226426761	G	T	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	silent	c.1204	p.R402	1.000	NULL	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	65	0	0	52	45	46.39	-	-	-	T	226426761	G	T	226426761	2	4	95	1	0	0	0	0	0	0	0	1	8869	1086	38	3		3	LIN9	1	226426761	Silent	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	53269101	226426761	22823860	5	6061										
LYST	0	genome.wustl.edu	37	chr1	235891402	235891402	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ttcaactgtatcagaagcatTatcttccacaaaatacattc	3	10	3	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	235891402	235891402	T	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.9136	p.N3046D	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	55	0	0	59	22	27.16	-	-	-	C	235891402	T	C	235891402	3	2	95	1	0	0	0	0	1	0	0	0	9195	1754	61	5	2333	5	LYST	1	235891402	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09	9464641	235891402	13359219	6	6062										
FIGLA	0	genome.wustl.edu	37	chr2	71012744	71012744	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	tgattcagaactgttgttacTatagctctgctcatctgggt	9	8	4	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	71012744	71012744	T	C	SNP	FIGLA	ENST00000332372	human	ensembl	69_37n	-1	known	missense	c.412	p.S138G	0.120	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FIGLA	HGNC	ENSG00000183733	106	0	0	86	22	20.18	-	-	-	C	71012744	T	C	71012744	3	2	95	1	0	0	0	0	1	0	0	0	5936	1522	53	5	259	5	FIGLA	2	71012744	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09		71012744	172186629	7	6063										
GLI2	0	genome.wustl.edu	37	chr2	121685040	121685040	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cattctgtccacggtgtgcaCgggtaagtcctgccctctgc	11	14	2	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	121685040	121685040	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.252	p.H84Q	0.904	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	35	0	0	22	16	42.11	-	-	-	G	121685040	C	G	121685040	3	3	95	1	0	0	0	0	1	0	0	0	6490	535	19	3	258	3	GLI2	2	121685040	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	50672296	121685040	121514333	8	6064										
WDR33	0	genome.wustl.edu	37	chr2	128526530	128526530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	attgtaataacctgcatcagGctgaattgcccgcatatctc	7	11	2	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	128526530	128526530	G	A	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.250	p.P84S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	53	0	0	45	28	37.84	-	-	-	A	128526530	G	A	128526530	3	1	95	1	0	0	0	0	1	0	0	0	17384	1203	42	4	4249	4	WDR33	2	128526530	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	6841490	128526530	114672843	9	6065										
CX3CR1	0	genome.wustl.edu	37	chr3	39306996	39306997	+	Frame_Shift_Del	DEL	TC	TC	-													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaattgctgctcagaacactTccatgcctgctcctttgtga							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	39306996	39306997	TC	-	DEL	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	frame_shift_del	c.1101_1100	p.G367fs	0.002:0.002	prints_Chemokine_fractalkine_CX3CR1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	21	0	0	13	8	38.1	-	-	-	-	39306997	TC	-	39306996	7	5	95	1	0	1	0	1	0	0	0	0	4106	1770	62	0	66	0	CX3CR1	3	39306996	Frame_Shift_Del	DEL	TC	TCGA-A2-A25E-01A-11D-A167-09		39306996	158715434	10	6066	45	2								
CX3CR1	0	genome.wustl.edu	37	chr3	39307000	39307000	+	Frame_Shift_Del	DEL	T	T	-													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	tgctgctcagaacacttccaTgcctgctcctttgtgattca							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	39307000	39307000	T	-	DEL	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	frame_shift_del	c.1097	p.H366fs	0.003	prints_Chemokine_fractalkine_CX3CR1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	23	0	0	12	8	36.36	-	-	-	-	39307000	T	-	39307000	7	5	95	1	0	1	0	1	0	0	0	0	4106	1464	51	0	70	0	CX3CR1	3	39307000	Frame_Shift_Del	DEL	T	TCGA-A2-A25E-01A-11D-A167-09	4	39307000	158715430	11	6067	45	2								
MAP3K13	0	genome.wustl.edu	37	chr3	185165736	185165736	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	tctgaaaaagttgatatatgGtgagtggcgccaccagttgt	12	6	1	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	185165736	185165736	G	A	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	splice_site	c.1010+1	e4+1	1.000	-	-	-	no_errors	MAP3K13	HGNC	ENSG00000073803	26	0	0	23	8	25.81	-	-	-	A	185165736	G	A	185165736	5	1	95	1	0	0	0	0	0	0	1	0	9318	1275	44	4	1025	4	MAP3K13	3	185165736	Splice_Site	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	145858736	185165736	12856694	12	6068										
RBM46	0	genome.wustl.edu	37	chr4	155719029	155719029	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaaaatacctcgtgatatgtAtgaagatgagttagttcctg	9	5	0	4			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	4	155719029	155719029	A	T	SNP	RBM46	ENST00000281722	human	ensembl	69_37n	1	known	missense	c.218	p.Y73F	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962	79	0	0	65	27	29.35	-	-	-	T	155719029	A	T	155719029	3	4	95	1	0	0	0	0	1	0	0	0	13223	449	16	5	224	5	RBM46	4	155719029	Missense_Mutation	SNP	A	TCGA-A2-A25E-01A-11D-A167-09		155719029	35435247	13	6069										
IQGAP2	0	genome.wustl.edu	37	chr5	75970488	75970488	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ttgaaggagaaaatgagcatCtctcatctatgaacaattat	7	6	3	4			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	5	75970488	75970488	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	missense	c.3481	p.L1161F	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	28	0	0	15	15	50	-	-	-	T	75970488	C	T	75970488	3	4	95	1	0	0	0	0	1	0	0	0	7869	913	32	2	3587	2	IQGAP2	5	75970488	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09		75970488	104944772	14	6070										
ATXN1	0	genome.wustl.edu	37	chr6	16326909	16326909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ctgggcctgcaccatggctgGgtaggcggcctgggtgacca	17	12	0	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	16326909	16326909	G	T	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.1633	p.P545T	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	22	0	0	19	9	32.14	-	-	-	T	16326909	G	T	16326909	3	4	95	1	0	0	0	0	1	0	0	0	1213	1232	43	4	822	4	ATXN1	6	16326909	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		16326909	154788158	15	6071										
KIAA0319	0	genome.wustl.edu	37	chr6	24559272	24559272	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	accctcaagaccttgaaaagCaagaagtcagccttctcctt	6	13	3	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	24559272	24559272	C	G	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.2703	p.L901F	1.000	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	37	0	0	33	11	25	-	-	-	G	24559272	C	G	24559272	3	3	95	1	0	0	0	0	1	0	0	0	8220	709	25	4	535	4	KIAA0319	6	24559272	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	8232363	24559272	146555795	16	6072										
HIST1H2BE	0	genome.wustl.edu	37	chr6	26184396	26184397	+	In_Frame_Ins	INS	-	-	TGG													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cgttaccaagtacaccagctINSccaagtaaacttgtccctgc							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	26184396	26184397	-	TGG	INS	HIST1H2BE	ENST00000356530	human	ensembl	69_37n	1	known	in_frame_ins	c.373_374	p.S125in_frame_insLA	1.000:1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BE	HGNC	ENSG00000197697	33	0	0	19	6	24	-	-	-	TGG	26184397	-	TGG	26184396	7	5	95	1	0	1	1	0	0	0	0	0	7195	1551	54	0	375	0	HIST1H2BE	6	26184396	In_Frame_Ins	INS	-	TCGA-A2-A25E-01A-11D-A167-09	1625124	26184396	144930671	17	6073										
HIST1H2AI	0	genome.wustl.edu	37	chr6	27776320	27776320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cagggtggcgtcctgcccaaCatccaggccgtgctactgcc	12	16	0	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	27776320	27776320	C	A	SNP	HIST1H2AI	ENST00000358739	human	ensembl	69_37n	1	known	missense	c.333	p.N111K	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AI	HGNC	ENSG00000196747	49	0	0	35	17	32.69	-	-	-	A	27776320	C	A	27776320	3	1	95	1	0	0	0	0	1	0	0	0	7186	477	17	4	335	4	HIST1H2AI	6	27776320	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	1591924	27776320	143338747	18	6074										
TRIM50	0	genome.wustl.edu	37	chr7	72727112	72727112	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gcatcgaagaaggtgagttcGccctgctcatagtgcaggta	13	9	1	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	72727112	72727112	G	T	SNP	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	silent	c.1269	p.G423	0.034	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	9	0	0	11	4	26.67	-	-	-	T	72727112	G	T	72727112	2	4	95	1	0	0	0	0	0	0	0	1	16622	1074	38	3		3	TRIM50	7	72727112	Silent	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		72727112	86411551	19	6075										
MOGAT3	0	genome.wustl.edu	37	chr7	100842014	100842014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gggagaagccattgctctcgGtggagaaattacagaggaag	15	6	1	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	100842014	100842014	G	C	SNP	MOGAT3	ENST00000440203	human	ensembl	69_37n	-1	known	missense	c.386	p.T129S	0.955	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	26	0	0	14	11	44	-	-	-	C	100842014	G	C	100842014	3	2	95	1	0	0	0	0	1	0	0	0	9768	1261	44	4	655	4	MOGAT3	7	100842014	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	28114902	100842014	58296649	20	6076										
GIMAP6	0	genome.wustl.edu	37	chr7	150325382	150325382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cacctctggcgagacctgggGggacagaatgttgggtgtgt	17	8	1	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	150325382	150325382	G	T	SNP	GIMAP6	ENST00000328902	human	ensembl	69_37n	-1	known	missense	c.304	p.P102T	0.805	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP6	HGNC	ENSG00000133561	30	0	0	29	7	19.44	-	-	-	T	150325382	G	T	150325382	3	4	95	1	0	0	0	0	1	0	0	0	6435	1232	43	4	578	4	GIMAP6	7	150325382	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	49483368	150325382	8813281	21	6077										
ZNF16	0	genome.wustl.edu	37	chr8	146157623	146157623	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gaaactctggccacccatgtCatatggatgtggcctctctt	9	12	3	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	8	146157623	146157623	C	T	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.550	p.D184N	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	30	0	0	44	10	18.18	-	-	-	T	146157623	C	T	146157623	3	4	95	1	0	0	0	0	1	0	0	0	17834	826	29	2	1502	2	ZNF16	8	146157623	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09		146157623	206399	22	6078										
NTRK2	0	genome.wustl.edu	37	chr9	87563383	87563383	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	acacccatccccagaccctgAaggatgccagtgacaatgca	8	15	0	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	9	87563383	87563383	A	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	nonsense	c.1771	p.K591*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	35	0	0	28	6	17.65	-	-	-	T	87563383	A	T	87563383	4	4	95	1	0	0	0	0	0	1	0	0	10780	247	9	5	1904	5	NTRK2	9	87563383	Nonsense_Mutation	SNP	A	TCGA-A2-A25E-01A-11D-A167-09		87563383	53650048	23	6079										
C5	0	genome.wustl.edu	37	chr9	123789552	123789552	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	actactttattataaaaataTctgtcagacaatagcataaa	3	6	2	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	9	123789552	123789552	T	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.759	p.R253S	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	73	0	0	56	29	34.12	-	-	-	A	123789552	T	A	123789552	3	1	95	1	0	0	0	0	1	0	0	0	2301	1449	50	5	4407	5	C5	9	123789552	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09	36226169	123789552	17423879	24	6080										
ITIH2	0	genome.wustl.edu	37	chr10	7773943	7773943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	attggatcaaatagagagcgTtatcacggcgacttcggtac	11	8	2	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	10	7773943	7773943	T	C	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	missense	c.1631	p.V544A	0.342	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	53	0	0	35	20	36.36	-	-	-	C	7773943	T	C	7773943	3	2	95	1	0	0	0	0	1	0	0	0	7958	1725	60	5	1681	5	ITIH2	10	7773943	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09		7773943	127760804	25	6081										
TMEM86A	0	genome.wustl.edu	37	chr11	18723330	18723330	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gcgagctatggcagggctgcGgctggccggggcagactggc	20	11	0	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	18723330	18723330	G	C	SNP	TMEM86A	ENST00000280734	human	ensembl	69_37n	1	known	missense	c.497	p.R166P	1.000	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117	27	0	0	24	14	36.84	-	-	-	C	18723330	G	C	18723330	3	2	95	1	0	0	0	0	1	0	0	0	16303	1116	39	3	507	3	TMEM86A	11	18723330	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		18723330	116283186	26	6082										
TTC17	0	genome.wustl.edu	37	chr11	43411360	43411360	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	acatacataactttggagagCaaagacatcaggtaaagaag	9	6	1	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	43411360	43411360	C	T	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	silent	c.408	p.S136	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	43	0	0	44	32	42.11	-	-	-	T	43411360	C	T	43411360	2	4	95	1	0	0	0	0	0	0	0	1	16781	709	25	4		4	TTC17	11	43411360	Silent	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	24688030	43411360	91595156	27	6083										
KBTBD4	0	genome.wustl.edu	37	chr11	47599443	47599444	+	Frame_Shift_Ins	INS	-	-	A													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	agctcctcctctagacacagINStttcatgatgccttgagcca							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	47599443	47599444	-	A	INS	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	frame_shift_ins	c.157_156	p.L52fs	1.000:1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	33	0	0	27	5	15.62	-	-	-	A	47599444	-	A	47599443	7	5	95	1	0	1	1	0	0	0	0	0	8049	1020	36	0	1459	0	KBTBD4	11	47599443	Frame_Shift_Ins	INS	-	TCGA-A2-A25E-01A-11D-A167-09	4188083	47599443	87407073	28	6084										
SLC3A2	0	genome.wustl.edu	37	chr11	62652118	62652118	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ttctaggatgcatcctcattCttggctgagtggcaaaatat	9	8	3	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	62652118	62652118	C	T	SNP	SLC3A2	ENST00000377892	human	ensembl	69_37n	1	known	silent	c.1170	p.F390	0.102	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003	96	0	0	64	30	31.91	-	-	-	T	62652118	C	T	62652118	2	4	95	1	0	0	0	0	0	0	0	1	14716	912	32	2		2	SLC3A2	11	62652118	Silent	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	15052675	62652118	72354398	29	6085										
MLL	0	genome.wustl.edu	37	chr11	118344574	118344575	+	Frame_Shift_Ins	INS	-	-	TAAA													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaaagggatcagaaattcagINSagtagttctgctttgtatcc							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	118344574	118344575	-	TAAA	INS	MLL	ENST00000389506	human	ensembl	69_37n	1	known	frame_shift_ins	c.2700_2701	p.S900fs	1.000:1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	89	0	0	22	16	42.11	-	-	-	TAAA	118344575	-	TAAA	118344574	7	5	95	1	0	1	1	0	0	0	0	0	9691	933	33	0	2710	0	MLL	11	118344574	Frame_Shift_Ins	INS	-	TCGA-A2-A25E-01A-11D-A167-09	55692456	118344574	16661942	30	6086										
ERC1	0	genome.wustl.edu	37	chr12	1517405	1517405	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaacaaatcacaagccctccCcagaccaggtaagatggctc	7	14	1	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	1517405	1517405	C	G	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.3016	p.P1006A	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	49	0	0	47	20	29.85	-	-	-	G	1517405	C	G	1517405	3	3	95	1	0	0	0	0	1	0	0	0	5247	623	22	4	3078	4	ERC1	12	1517405	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09		1517405	132334490	31	6087										
CHPT1	0	genome.wustl.edu	37	chr12	102117039	102117039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cagcaactgatgtgtttgaaAagcatccttgtctttatatc	7	8	1	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	102117039	102117039	A	C	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	1	known	missense	c.874	p.K292Q	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	83	0	0	79	41	34.17	-	-	-	C	102117039	A	C	102117039	3	2	95	1	0	0	0	0	1	0	0	0	3399	15	1	5	896	5	CHPT1	12	102117039	Missense_Mutation	SNP	A	TCGA-A2-A25E-01A-11D-A167-09	100599634	102117039	31734856	32	6088										
SART3	0	genome.wustl.edu	37	chr12	108920132	108920132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gcaggttgctgacaaagacgGtgatgctgtccttgctgctg	14	9	0	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	108920132	108920132	G	A	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.2114	p.T705I	0.998	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	34	0	0	22	33	60	-	-	-	A	108920132	G	A	108920132	3	1	95	1	0	0	0	0	1	0	0	0	13934	1261	44	4	793	4	SART3	12	108920132	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	6803093	108920132	24931763	33	6089										
CCDC60	0	genome.wustl.edu	37	chr12	119966483	119966483	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cttgtctcaaattttcaaaaGgacatagcaaaaatgagaca	6	7	2	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	119966483	119966483	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	silent	c.1293	p.K431	1.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	46	0	0	28	11	28.21	-	-	-	A	119966483	G	A	119966483	2	1	95	1	0	0	0	0	0	0	0	1	2858	991	35	4		4	CCDC60	12	119966483	Silent	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	11046351	119966483	13885412	34	6090										
LNX2	0	genome.wustl.edu	37	chr13	28134091	28134091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gctggggtttccctggtctaGcaattgttaaattcactctc	9	10	3	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	13	28134091	28134091	G	T	SNP	LNX2	ENST00000316334	human	ensembl	69_37n	-1	known	missense	c.1256	p.A419D	0.996	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517	115	0	0	89	50	35.97	-	-	-	T	28134091	G	T	28134091	3	4	95	1	0	0	0	0	1	0	0	0	8922	971	34	4	836	4	LNX2	13	28134091	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		28134091	87035787	35	6091										
TTLL5	0	genome.wustl.edu	37	chr14	76246009	76246011	+	In_Frame_Del	DEL	AAC	AAC	-													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ctcactctaaaatttctaagAacaacaacaattattctgat							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	14	76246009	76246011	AAC	-	DEL	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	in_frame_del	c.2479_2481	p.N830in_frame_del	0.983:1.000:1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	67	0	0	31	28	47.46	-	-	-	-	76246011	AAC	-	76246009	7	5	95	1	0	1	0	1	0	0	0	0	16827	246	9	0	2569	0	TTLL5	14	76246009	In_Frame_Del	DEL	AAC	TCGA-A2-A25E-01A-11D-A167-09		76246009	31103531	36	6092										
ITGAX	0	genome.wustl.edu	37	chr16	31384615	31384615	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aacctggagctgaacgcagaAgtgatggtgtggaatgacgg	16	6	0	4			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	16	31384615	31384615	A	G	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.2412	p.E804	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	21	0	0	20	8	28.57	-	-	-	G	31384615	A	G	31384615	2	3	95	1	0	0	0	0	0	0	0	1	7943	69	3	5		5	ITGAX	16	31384615	Silent	SNP	A	TCGA-A2-A25E-01A-11D-A167-09		31384615	58970138	37	6093										
RNASEK	0	genome.wustl.edu	37	chr17	6917541	6917541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cgctgcaggcctttacctccTcctcggaggcttctctttct	8	16	2	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	6917541	6917541	T	C	SNP	RNASEK	ENST00000548577	human	ensembl	69_37n	1	known	missense	c.350	p.L117P	1.000	NULL	NULL	-	no_errors	RNASEK	HGNC	ENSG00000219200	26	0	0	17	11	39.29	-	-	-	C	6917541	T	C	6917541	3	2	95	1	0	0	0	0	1	0	0	0	13501	1551	54	5	243	5	RNASEK	17	6917541	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09		6917541	74277669	38	6094										
ULK2	0	genome.wustl.edu	37	chr17	19699025	19699025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ttgttgatctgataacttccCggtactgacagatctaaaaa	7	8	2	4			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	19699025	19699025	C	T	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	missense	c.2011	p.G671R	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	75	0	0	72	27	27	-	-	-	T	19699025	C	T	19699025	3	4	95	1	0	0	0	0	1	0	0	0	17073	652	23	1	1131	1	ULK2	17	19699025	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	12781484	19699025	61496185	39	6095										
ABCA10	0	genome.wustl.edu	37	chr17	67190107	67190107	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gtcagttatttcagagagttGagtattataaatagtggctg	11	3	2	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	67190107	67190107	G	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	nonsense	c.1369	p.Q457*	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	69	0	0	74	29	28.16	-	-	-	A	67190107	G	A	67190107	4	1	95	1	0	0	0	0	0	1	0	0	29	1299	45	2	3370	2	ABCA10	17	67190107	Nonsense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	47491082	67190107	14005103	40	6096										
RHBDF2	0	genome.wustl.edu	37	chr17	74470176	74470176	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gcccagatcagacttgtccaTggggggcccagtgtcatcct	12	13	2	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	74470176	74470176	T	C	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.1600	p.M534V	0.984	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	23	0	0	16	9	36	-	-	-	C	74470176	T	C	74470176	3	2	95	1	0	0	0	0	1	0	0	0	13404	1464	51	5	998	5	RHBDF2	17	74470176	Missense_Mutation	SNP	T	TCGA-A2-A25E-01A-11D-A167-09	7280069	74470176	6725034	41	6097										
ROCK1	0	genome.wustl.edu	37	chr18	18586456	18586456	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ctcttgcaactctctgttcaGggactctaactgactaattg	7	11	4	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	18	18586456	18586456	G	C	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.1741	p.L581V	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	63	0	0	53	29	35.37	-	-	-	C	18586456	G	C	18586456	3	2	95	1	0	0	0	0	1	0	0	0	13603	991	35	4	2395	4	ROCK1	18	18586456	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		18586456	59490792	42	6098										
ONECUT2	0	genome.wustl.edu	37	chr18	55103476	55103477	+	In_Frame_Ins	INS	-	-	CAC													0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ctcacccgcaccaccatccgINScaccaccaccaccaccacca							TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	18	55103476	55103477	-	CAC	INS	ONECUT2	ENST00000262095	human	ensembl	69_37n	1	known	in_frame_ins	c.528_529	p.180in_frame_insH	0.715:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547	16	0	0	21	10	32.26	-	-	-	CAC	55103477	-	CAC	55103476	7	5	95	1	0	1	1	0	0	0	0	0	10942	1074	38	0	530	0	ONECUT2	18	55103476	In_Frame_Ins	INS	-	TCGA-A2-A25E-01A-11D-A167-09	36517020	55103476	22973772	43	6099										
ZNF546	0	genome.wustl.edu	37	chr19	40520249	40520249	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	atactggtgagaggccttatGaatgtaaggtttgtggcaag	14	4	0	2			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	40520249	40520249	G	A	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	missense	c.1072	p.E358K	0.044	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	47	0	0	50	25	33.33	-	-	-	A	40520249	G	A	40520249	3	1	95	1	0	0	0	0	1	0	0	0	18074	1291	45	2	1090	2	ZNF546	19	40520249	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		40520249	18608734	44	6100										
GSK3A	0	genome.wustl.edu	37	chr19	42744148	42744148	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	aaccttcttgatggcgactaGttccctggtctctgccagcc	9	14	2	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	42744148	42744148	G	C	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.430	p.L144V	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	42	0	0	38	17	30.91	-	-	-	C	42744148	G	C	42744148	3	2	95	1	0	0	0	0	1	0	0	0	6874	1020	36	4	1061	4	GSK3A	19	42744148	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	2223899	42744148	16384835	45	6101										
LILRA6	0	genome.wustl.edu	37	chr19	54745496	54745496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cactggggtgggaccacaccCggggggtgtttgtataatag	16	8	0	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	54745496	54745496	C	T	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.614	p.R205Q	0.036	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	22	0	0	14	6	30	-	-	-	T	54745496	C	T	54745496	3	4	95	1	0	0	0	0	1	0	0	0	8844	652	23	1	851	1	LILRA6	19	54745496	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	12001348	54745496	4383487	46	6102										
NSFL1C	0	genome.wustl.edu	37	chr20	1435746	1435746	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gggagggccaacaatctgctGtccacttctctctgagcccc	10	15	3	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	20	1435746	1435746	G	C	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.316	p.Q106E	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	63	0	0	69	19	21.59	-	-	-	C	1435746	G	C	1435746	3	2	95	1	0	0	0	0	1	0	0	0	10745	1386	48	4	826	4	NSFL1C	20	1435746	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09		1435746	61589774	47	6103										
ATP9A	0	genome.wustl.edu	37	chr20	50238636	50238636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ccgaaaaacgtggatgtcttGgtttctggtcaccagatgtg	12	8	3	1			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	20	50238636	50238636	G	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.2092	p.Q698K	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	46	0	0	74	17	18.68	-	-	-	T	50238636	G	T	50238636	3	4	95	1	0	0	0	0	1	0	0	0	1202	1357	47	4	1091	4	ATP9A	20	50238636	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	48802890	50238636	12786884	48	6104										
WWC3	0	genome.wustl.edu	37	chrX	10102560	10102560	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	cagccgccgggcccgagggtCgccttttgttcggagtggca	16	13	0	0			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	10102560	10102560	C	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.2687	p.S896W	0.336	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	47	0	0	27	37	57.81	-	-	-	G	10102560	C	G	10102560	3	3	95	1	0	0	0	0	1	0	0	0	17510	893	31	3	2757	3	WWC3	23	10102560	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09		10102560	145168000	49	6105										
PHKA2	0	genome.wustl.edu	37	chrX	18942252	18942252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	gaatgtctgagccatcatttGctaaggaaaaaaagtgatga	10	5	2	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	18942252	18942252	G	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1715	p.T572K	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	29	0	0	29	9	23.68	-	-	-	T	18942252	G	T	18942252	3	4	95	1	0	0	0	0	1	0	0	0	11918	1333	46	4	2060	4	PHKA2	23	18942252	Missense_Mutation	SNP	G	TCGA-A2-A25E-01A-11D-A167-09	8839692	18942252	136328308	50	6106										
AWAT2	0	genome.wustl.edu	37	chrX	69263413	69263413	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	ggggtgatgccaggaaatatCttggagaagcctgaggcctc	15	8	1	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	69263413	69263413	C	A	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	missense	c.387	p.K129N	0.998	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	50	0	0	29	19	39.58	-	-	-	A	69263413	C	A	69263413	3	1	95	1	0	0	0	0	1	0	0	0	1239	912	32	2	630	2	AWAT2	23	69263413	Missense_Mutation	SNP	C	TCGA-A2-A25E-01A-11D-A167-09	50321161	69263413	86007147	51	6107										
BRWD3	0	genome.wustl.edu	37	chrX	79999555	79999555	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0980392156862745	5	0.683080497494884	1.28304597701149	0	2.36870026525199	0.0151515151515152	0.179340149574026	0	atggaagtaatagaagctgaAtggccctgaaggactgcaac	12	7	0	3			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	79999555	79999555	A	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.789	p.H263	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	45	0	0	39	24	38.1	-	-	-	G	79999555	A	G	79999555	2	3	95	1	0	0	0	0	0	0	0	1	1534	98	4	5		5	BRWD3	23	79999555	Silent	SNP	A	TCGA-A2-A25E-01A-11D-A167-09	10736142	79999555	75271005	52	6108										
PER3	0	genome.wustl.edu	37	chr1	7890055	7890055	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcccatcctactgccagcgcTctgtccacaggatcgcctcc	7	19	1	0			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	18	0	0	25	7	21.88	-	-	-	A	7890055	T	A	7890055	2	1	96	1	0	0	0	0	0	0	0	1	11804	1538	54	5		5	PER3	1	7890055	Silent	SNP	T	TCGA-A2-A25F-01A-11D-A167-09		7890055	241360566	1	6109										
KLK5	0	genome.wustl.edu	37	chr19	51452257	51452257	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgagcatgaggttgttagaGtggccagggtgggagtagcc	18	5	0	3			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	19	51452257	51452257	G	A	SNP	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	silent	c.450	p.H150	0.980	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	38	0	0	53	6	10.17	-	-	-	A	51452257	G	A	51452257	2	1	96	1	0	0	0	0	0	0	0	1	8460	1020	36	4		4	KLK5	19	51452257	Silent	SNP	G	TCGA-A2-A25F-01A-11D-A167-09		51452257	7676726	2	6110										
SHROOM4	0	genome.wustl.edu	37	chrX	50350782	50350782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctgctgttgctgcttctgCtgctgggctgcacgaaagag	14	10	1	1			TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	X	50350782	50350782	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.3360	p.Q1120	0.943	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	21	0	0	18	11	37.93	-	-	-	T	50350782	C	T	50350782	2	4	96	1	0	0	0	0	0	0	0	1	14385	796	28	4		4	SHROOM4	23	50350782	Silent	SNP	C	TCGA-A2-A25F-01A-11D-A167-09		50350782	104919778	3	6111										
TRAPPC3	0	genome.wustl.edu	37	chr1	36603290	36603290	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caccatctcaggcagtaaagCgctggggtgagccaaagccc	12	13	1	1			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	36603290	36603290	C	T	SNP	TRAPPC3	ENST00000462715	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	55	0	0	32	6	15.79	-	-	-	T	36603290	C	T	36603290	1	4	97	0	1	0	0	0	0	0	0	0	16556	783	27	1		1	TRAPPC3	1	36603290	RNA	SNP	C	TCGA-A2-A3KC-01A-11D-A20S-09		36603290	212647331	1	6112										
EPHX1	0	genome.wustl.edu	37	chr1	226026576	226026578	+	In_Frame_Del	DEL	AAG	AAG	-													0	0	1	0	NA	0	1	1	0	gcttctcagaggcatcctccAagaagggtacggggctgcta							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	226026576	226026578	AAG	-	DEL	EPHX1	ENST00000272167	human	ensembl	69_37n	1	known	in_frame_del	c.586_588	p.K197in_frame_del	1.000:1.000:1.000	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	47	0	0	37	21	35	-	-	-	-	226026578	AAG	-	226026576	7	5	97	1	0	1	0	1	0	0	0	0	5216	131	5	0	596	0	EPHX1	1	226026576	In_Frame_Del	DEL	AAG	TCGA-A2-A3KC-01A-11D-A20S-09	189423286	226026576	23224045	2	6113										
GALNT2	0	genome.wustl.edu	37	chr1	230417408	230417408	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccttgtgcggcccatgcccTgggggcggcgtcctgtccct	14	17	0	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	1	230417408	230417408	T	C	SNP	GALNT2	ENST00000485438	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GALNT2	HGNC	ENSG00000143641	39	0	0	47	6	11.32	-	-	-	C	230417408	T	C	230417408	1	2	97	0	1	0	0	0	0	0	0	0	6263	1595	55	5		5	GALNT2	1	230417408	RNA	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09	4390832	230417408	18833213	3	6114										
ANKRD36B	0	genome.wustl.edu	37	chr2	98165911	98165911	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atttttctccatccttttttTctctggctatattcaaaaca	2	10	3	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	113	1	0.88	73	11	13.1	-	-	-	C	98165911	T	C	98165911	1	2	97	0	1	0	0	0	0	0	0	0	665	1783	62	5		5	ANKRD36B	2	98165911	RNA	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09		98165911	145033462	4	6115										
DNPEP	0	genome.wustl.edu	37	chr2	220250745	220250745	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gatatttcgctgcagatggaTggccaggtgtgggatgcgaa	16	6	0	1			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	2	220250745	220250745	T	A	SNP	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	missense	c.535	p.I179F	1.000	pfam_Peptidase_M18,prints_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	80	0	0	45	12	21.05	-	-	-	A	220250745	T	A	220250745	3	1	97	1	0	0	0	0	1	0	0	0	4714	1464	51	5	962	5	DNPEP	2	220250745	Missense_Mutation	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09	122084834	220250745	22948628	5	6116										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	12	0	0	12	4	25	-	-	-	G	178952085	A	G	178952085	3	3	97	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A2-A3KC-01A-11D-A20S-09		178952085	19070345	6	6117										
PCDHB12	0	genome.wustl.edu	37	chr5	140589906	140589906	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	catcggcagcatcagcgccaCagacagagactcgggcacca	11	15	1	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	5	140589906	140589906	C	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.1427	p.T476K	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	88	0	0	65	25	27.78	-	-	-	A	140589906	C	A	140589906	3	1	97	1	0	0	0	0	1	0	0	0	11610	478	17	4	1429	4	PCDHB12	5	140589906	Missense_Mutation	SNP	C	TCGA-A2-A3KC-01A-11D-A20S-09		140589906	40325354	7	6118										
GPRIN1	0	genome.wustl.edu	37	chr5	176025940	176025940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccatgctttccaagggcatgGgatctgcctttcccgagggc	12	13	1	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	5	176025940	176025940	G	T	SNP	GPRIN1	ENST00000303991	human	ensembl	69_37n	-1	known	missense	c.896	p.P299H	0.018	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	53	0	0	27	9	25	-	-	-	T	176025940	G	T	176025940	3	4	97	1	0	0	0	0	1	0	0	0	6780	1232	43	4	2134	4	GPRIN1	5	176025940	Missense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09	35436034	176025940	4889320	8	6119										
MED23	0	genome.wustl.edu	37	chr6	131925356	131925356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccaaagactctatttccataTagaccaataaacgactgtaa	4	10	1	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	6	131925356	131925356	T	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1736	p.Y579C	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	28	0	0	16	6	27.27	-	-	-	C	131925356	T	C	131925356	3	2	97	1	0	0	0	0	1	0	0	0	9512	1406	49	5	2455	5	MED23	6	131925356	Missense_Mutation	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09		131925356	39189711	9	6120										
GPC2	0	genome.wustl.edu	37	chr7	99767587	99767587	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agccccagccttagagggctAgagactataccttctaagga	10	11	1	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	99767587	99767587	A	G	SNP	GPC2	ENST00000471050	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPC2	HGNC	ENSG00000213420	32	0	0	43	7	14	-	-	-	G	99767587	A	G	99767587	1	3	97	0	1	0	0	0	0	0	0	0	6648	435	15	5		5	GPC2	7	99767587	RNA	SNP	A	TCGA-A2-A3KC-01A-11D-A20S-09		99767587	59371076	10	6121										
GCC1	0	genome.wustl.edu	37	chr7	127224987	127224987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgagtggagcaccggtcatCcacagagtcaggaaaggtga	15	8	2	3			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	127224987	127224987	C	A	SNP	GCC1	ENST00000321407	human	ensembl	69_37n	-1	known	missense	c.250	p.D84Y	1.000	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562	40	0	0	27	12	30.77	-	-	-	A	127224987	C	A	127224987	3	1	97	1	0	0	0	0	1	0	0	0	6335	855	30	2	2085	2	GCC1	7	127224987	Missense_Mutation	SNP	C	TCGA-A2-A3KC-01A-11D-A20S-09	27457400	127224987	31913676	11	6122										
ZNF467	0	genome.wustl.edu	37	chr7	149461958	149461960	+	In_Frame_Del	DEL	AGG	AGG	-													0	0	1	0	NA	0	1	1	0	gctctttccgcactgcgggcAggagaaggggcgggagcctg							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	149461958	149461960	AGG	-	DEL	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	in_frame_del	c.1633_1631	p.S544in_frame_del	0.991:0.317:0.255	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	62	0	0	24	12	33.33	-	-	-	-	149461960	AGG	-	149461958	7	5	97	1	0	1	0	1	0	0	0	0	18023	188	7	0	158	0	ZNF467	7	149461958	In_Frame_Del	DEL	AGG	TCGA-A2-A3KC-01A-11D-A20S-09	22236971	149461958	9676705	12	6123										
MLL3	0	genome.wustl.edu	37	chr7	151848016	151848019	+	Frame_Shift_Del	DEL	GATG	GATG	-													0	0	1	0	NA	0	1	1	0	agtttttcgcttgtgcagttGatgaataaagaataaagcag							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	GATG	GATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	7	151848016	151848019	GATG	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.12914_12911	p.S4304fs	1.000:0.999:0.998:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	32	0	0	34	8	19.05	-	-	-	-	151848019	GATG	-	151848016	7	5	97	1	0	1	0	1	0	0	0	0	9693	1294	45	0	2028	0	MLL3	7	151848016	Frame_Shift_Del	DEL	GATG	TCGA-A2-A3KC-01A-11D-A20S-09	2386058	151848016	7290647	13	6124										
NOL6	0	genome.wustl.edu	37	chr9	33468140	33468140	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agacagccgtgcctcatgctGtacctggagccacagaaggg	13	12	1	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	9	33468140	33468140	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	nonsense	c.1312	p.Q438*	0.999	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	56	0	0	31	4	11.43	-	-	-	A	33468140	G	A	33468140	4	1	97	1	0	0	0	0	0	1	0	0	10597	1386	48	4	2192	4	NOL6	9	33468140	Nonsense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09		33468140	107745291	14	6125										
RABEPK	0	genome.wustl.edu	37	chr9	127996096	127996096	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agattccaactctctcactcTgaaccatgaagctgagaaag	7	11	3	4			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	9	127996096	127996096	T	C	SNP	RABEPK	ENST00000373538	human	ensembl	69_37n	1	known	missense	c.956	p.L319P	0.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933	41	0	0	32	18	36	-	-	-	C	127996096	T	C	127996096	3	2	97	1	0	0	0	0	1	0	0	0	13046	1580	55	5	982	5	RABEPK	9	127996096	Missense_Mutation	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09	94527956	127996096	13217335	15	6126										
DMBT1	0	genome.wustl.edu	37	chr10	124339284	124339284	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccaggaaatgcccagtttggCcagggctcaggacccattgt	12	12	1	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	10	124339284	124339284	C	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	silent	c.870	p.G290	0.019	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	136	0	0	91	20	18.02	-	-	-	T	124339284	C	T	124339284	2	4	97	1	0	0	0	0	0	0	0	1	4613	726	26	4		4	DMBT1	10	124339284	Silent	SNP	C	TCGA-A2-A3KC-01A-11D-A20S-09		124339284	11195463	16	6127										
PTPRE	0	genome.wustl.edu	37	chr10	129883933	129883933	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tttaactaagttgtgtttaaCttatgtgcagtctttataat	6	4	1	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	10	129883933	129883933	C	T	SNP	PTPRE	ENST00000479896	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTPRE	HGNC	ENSG00000132334	52	0	0	33	5	13.16	-	-	-	T	129883933	C	T	129883933	1	4	97	0	1	0	0	0	0	0	0	0	12883	580	20	4		4	PTPRE	10	129883933	RNA	SNP	C	TCGA-A2-A3KC-01A-11D-A20S-09	5544649	129883933	5650814	17	6128										
RNH1	0	genome.wustl.edu	37	chr11	499583	499583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgtcgggtcctggggcagctGtgccttgcaaaggacaactg	15	11	0	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	11	499583	499583	G	A	SNP	RNH1	ENST00000531149	human	ensembl	69_37n	-1	putative	missense	c.461	p.T154I	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_stop_codon	RNH1	HGNC	ENSG00000023191	9	0	0	13	6	31.58	-	-	-	A	499583	G	A	499583	3	1	97	1	0	0	0	0	1	0	0	0	13590	1392	48	4		4	RNH1	11	499583	Missense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09		499583	134506933	18	6129										
MUC5B	0	genome.wustl.edu	37	chr11	1280246	1280246	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggggacacccaggacccaacGgtgcaatgtcaggaggatgc	15	11	1	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	11	1280246	1280246	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.16677	p.T5559	0.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	35	0	0	26	14	35	-	-	-	A	1280246	G	A	1280246	2	1	97	1	0	0	0	0	0	0	0	1	10051	1103	39	1		1	MUC5B	11	1280246	Silent	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09	780663	1280246	133726270	19	6130										
TXNRD1	0	genome.wustl.edu	37	chr12	104703836	104703836	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agctctgcctttcaccccctAcatctgatagtaggcaagag	8	13	3	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	104703836	104703836	A	G	SNP	TXNRD1	ENST00000427956	human	ensembl	69_37n	1	known	missense	c.268	p.T90A	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	40	0	0	26	5	16.13	-	-	-	G	104703836	A	G	104703836	3	3	97	1	0	0	0	0	1	0	0	0	16904	406	14	5		5	TXNRD1	12	104703836	Missense_Mutation	SNP	A	TCGA-A2-A3KC-01A-11D-A20S-09		104703836	29148059	20	6131										
TBX3	0	genome.wustl.edu	37	chr12	115115441	115115443	+	In_Frame_Del	DEL	GTC	GTC	-													0	0	1	0	NA	0	1	1	0	ccttttgcaaaagggttgttGtctatttttaactgggttat							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	12	115115441	115115443	GTC	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	in_frame_del	c.885_883	p.D295in_frame_del	1.000:1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	42	0	0	31	5	13.89	-	-	-	-	115115443	GTC	-	115115441	7	5	97	1	0	1	0	1	0	0	0	0	15754	1368	48	0	1362	0	TBX3	12	115115441	In_Frame_Del	DEL	GTC	TCGA-A2-A3KC-01A-11D-A20S-09	10411605	115115441	18736454	21	6132										
SRL	0	genome.wustl.edu	37	chr16	4257777	4257777	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcccctcctggagggagggcGcttgccactggtgggccatt	16	13	0	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	16	4257777	4257777	G	A	SNP	SRL	ENST00000572111	human	ensembl	69_37n	-1	known	silent	c.390	p.S130	0.000	NULL	NULL	-	no_errors	SRL	HGNC	ENSG00000185739	97	0	0	89	11	10.89	-	-	-	A	4257777	G	A	4257777	2	1	97	1	0	0	0	0	0	0	0	1	15241	1102	38	1		1	SRL	16	4257777	Silent	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09		4257777	86096976	22	6133										
CDH1	0	genome.wustl.edu	37	chr16	68862155	68862155	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	actgcccccagaggatgacaCccgggacaacgtttattact							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	16	68862155	68862155	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2243	p.R749fs	0.997	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	75	0	0	41	11	20.75	-	-	-	-	68862155	C	-	68862155	7	5	97	1	0	1	0	1	0	0	0	0	3124	507	18	0	2297	0	CDH1	16	68862155	Frame_Shift_Del	DEL	C	TCGA-A2-A3KC-01A-11D-A20S-09	64604378	68862155	21492598	23	6134										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7463369	7463369	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacactctcacctccagatgActccgatgtgacagaggtga	9	13	1	5			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	17	7463369	7463369	A	T	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	missense	c.629	p.D210V	1.000	superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	29	0	0	21	4	16	-	-	-	T	7463369	A	T	7463369	3	4	97	1	0	0	0	0	1	0	0	0	16399	275	10	5	663	5	TNFSF12-TNFSF13	17	7463369	Missense_Mutation	SNP	A	TCGA-A2-A3KC-01A-11D-A20S-09		7463369	73731841	24	6135										
RECQL5	0	genome.wustl.edu	37	chr17	73657112	73657112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	accttctcctccatccagtcGttctgcaccagcgttctttc	5	17	3	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	17	73657112	73657112	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	silent	c.909	p.N303	0.976	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	29	0	0	23	4	14.81	-	-	-	A	73657112	G	A	73657112	2	1	97	1	0	0	0	0	0	0	0	1	13286	1136	40	1		1	RECQL5	17	73657112	Silent	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09	66193743	73657112	7538098	25	6136										
KATNAL2	0	genome.wustl.edu	37	chr18	44610718	44610718	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	catagtaaccacatgcatttTtgggctccaggaagaagctg	10	9	0	1			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	18	44610718	44610718	T	C	SNP	KATNAL2	ENST00000592005	human	ensembl	69_37n	1	putative	silent	c.270	p.F90	0.000	NULL	pfam_ATPase_AAA_core	-	no_errors	KATNAL2	HGNC	ENSG00000167216	35	0	0	35	4	10.26	-	-	-	C	44610718	T	C	44610718	2	2	97	1	0	0	0	0	0	0	0	1	8040	1856	64	5		5	KATNAL2	18	44610718	Silent	SNP	T	TCGA-A2-A3KC-01A-11D-A20S-09		44610718	33466530	26	6137										
FAM108A1	0	genome.wustl.edu	37	chr19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	NA	0	1	1	0	ccggggcagggcgggcagcaGaagaggcagcagagctcact							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	1881527	1881527	G	-	DEL	FAM108A1	ENST00000250974	human	ensembl	69_37n	-1	known	frame_shift_del	c.39	p.C14fs	1.000	NULL	pfam_Dienelactn_hydro	-	no_errors	FAM108A1	HGNC	ENSG00000129968	9	0	0	4	3	42.86	-	-	-	-	1881527	G	-	1881527	7	5	97	1	0	1	0	1	0	0	0	0	5431	933	33	0	1066	0	FAM108A1	19	1881527	Frame_Shift_Del	DEL	G	TCGA-A2-A3KC-01A-11D-A20S-09		1881527	57247456	27	6138	46	2								
FAM108A1	0	genome.wustl.edu	37	chr19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	NA	0	1	1	0	ggggcagggcgggcagcagaAgaggcagcagagctcactca							TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	1881529	1881530	AG	-	DEL	FAM108A1	ENST00000250974	human	ensembl	69_37n	-1	known	frame_shift_del	c.37_36	p.F13fs	1.000:0.997	NULL	pfam_Dienelactn_hydro	-	no_errors	FAM108A1	HGNC	ENSG00000129968	10	0	0	4	3	42.86	-	-	-	-	1881530	AG	-	1881529	7	5	97	1	0	1	0	1	0	0	0	0	5431	72	3	0	1068	0	FAM108A1	19	1881529	Frame_Shift_Del	DEL	AG	TCGA-A2-A3KC-01A-11D-A20S-09	2	1881529	57247454	28	6139	46	2								
NLRP9	0	genome.wustl.edu	37	chr19	56226512	56226512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggcatttgagcccagatcgaGgagggacagggacttactgc	15	9	0	2			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	19	56226512	56226512	G	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.2410	p.L804I	0.011	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	16	0	0	16	6	27.27	-	-	-	T	56226512	G	T	56226512	3	4	97	1	0	0	0	0	1	0	0	0	10556	1000	35	4	581	4	NLRP9	19	56226512	Missense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09	54344983	56226512	2902471	29	6140										
INPP5J	0	genome.wustl.edu	37	chr22	31521404	31521404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagcatccacggcatcaggcGcagcctctgtgggacagaca	12	14	2	1			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	22	31521404	31521404	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	1	known	missense	c.679	p.A227T	0.011	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	25	0	0	26	4	13.33	-	-	-	A	31521404	G	A	31521404	3	1	97	1	0	0	0	0	1	0	0	0	7813	1102	38	1		1	INPP5J	22	31521404	Missense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09		31521404	19783162	30	6141										
CXorf22	0	genome.wustl.edu	37	chrX	35989851	35989851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atcgattgttaaccaccaggGgtatagcatctcaggaggaa	11	8	1	0			TCGA-A2-A3KC-01A-11D-A20S-09	TCGA-A2-A3KC-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd	abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef	X	35989851	35989851	G	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.2119	p.G707C	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	36	0	0	23	11	32.35	-	-	-	T	35989851	G	T	35989851	3	4	97	1	0	0	0	0	1	0	0	0	4133	1232	43	4	2165	4	CXorf22	23	35989851	Missense_Mutation	SNP	G	TCGA-A2-A3KC-01A-11D-A20S-09		35989851	119280709	31	6142										
FCRL3	0	genome.wustl.edu	37	chr1	157666256	157666256	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	agtaggaaataagaaattaaTtgtgtatacgattataaagg	9	1	0	1			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	1	157666256	157666256	T	C	SNP	FCRL3	ENST00000473231	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856	8	0	0	3	10	76.92	-	-	-	C	157666256	T	C	157666256	1	2	98	0	1	0	0	0	0	0	0	0	5842	1508	52	5		5	FCRL3	1	157666256	RNA	SNP	T	TCGA-A2-A3KD-01A-12D-A20S-09		157666256	91584365	1	6143										
OR6K6	0	genome.wustl.edu	37	chr1	158724608	158724608	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	aactcattacagaaaggaatGaagcaatattcagtgggtaa	9	5	2	2			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	1	158724608	158724608	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	32	0	0	67	8	10.67	-	-	-	A	158724608	G	A	158724608	3	1	98	1	0	0	0	0	1	0	0	0	11277	1290	45	2	5	2	OR6K6	1	158724608	Missense_Mutation	SNP	G	TCGA-A2-A3KD-01A-12D-A20S-09	1058352	158724608	90526013	2	6144										
LMCD1	0	genome.wustl.edu	37	chr3	8609232	8609232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	gagcggccgggcgtacatcgTcaccaagggtcagcttctgt	14	12	3	0			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	3	8609232	8609232	T	C	SNP	LMCD1	ENST00000157600	human	ensembl	69_37n	1	known	missense	c.1046	p.V349A	0.998	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282	47	0	0	25	8	23.53	-	-	-	C	8609232	T	C	8609232	3	2	98	1	0	0	0	0	1	0	0	0	8900	1667	58	5	1068	5	LMCD1	3	8609232	Missense_Mutation	SNP	T	TCGA-A2-A3KD-01A-12D-A20S-09		8609232	189413198	3	6145										
DGKG	0	genome.wustl.edu	37	chr3	185879390	185879390	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	ctcaaagattggcaagactcAccgtgcaacatggctgcatc	9	12	2	2			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	3	185879390	185879390	A	G	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	splice_site	c.2277+2	e23+2	1.000	-	-	-	no_errors	DGKG	HGNC	ENSG00000058866	50	0	0	34	12	25.53	-	-	-	G	185879390	A	G	185879390	5	3	98	1	0	0	0	0	0	0	1	0	4505	173	6	5	104	5	DGKG	3	185879390	Splice_Site	SNP	A	TCGA-A2-A3KD-01A-12D-A20S-09	177270158	185879390	12143040	4	6146										
FOXI1	0	genome.wustl.edu	37	chr5	169535084	169535084	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	tactggaccctggaccccaaCtgtgagaaaatgttcgacaa	9	11	0	1			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	5	169535084	169535084	C	T	SNP	FOXI1	ENST00000306268	human	ensembl	69_37n	1	known	silent	c.606	p.N202	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269	17	0	0	6	4	40	-	-	-	T	169535084	C	T	169535084	2	4	98	1	0	0	0	0	0	0	0	1	6057	564	20	4		4	FOXI1	5	169535084	Silent	SNP	C	TCGA-A2-A3KD-01A-12D-A20S-09		169535084	11380176	5	6147										
SLC39A9	0	genome.wustl.edu	37	chr14	69920016	69920016	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	accacgctgggtctggttgtCcatgctgcaggtagggttgg	16	9	1	0			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	14	69920016	69920016	C	T	SNP	SLC39A9	ENST00000555840	human	ensembl	69_37n	1	known	silent	c.462	p.V154	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A9	HGNC	ENSG00000029364	66	0	0	47	35	42.17	-	-	-	T	69920016	C	T	69920016	2	4	98	1	0	0	0	0	0	0	0	1	14714	842	30	2		2	SLC39A9	14	69920016	Silent	SNP	C	TCGA-A2-A3KD-01A-12D-A20S-09		69920016	37429524	6	6148										
MED1	0	genome.wustl.edu	37	chr17	37584005	37584005	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	agtcttgtcatccagtaggtCagaaggagagacatagtact	11	7	3	2			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	17	37584005	37584005	C	T	SNP	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	missense	c.688	p.D230N	1.000	pfam_Mediator_Med1_met/fun	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	38	0	0	25	4	13.79	-	-	-	T	37584005	C	T	37584005	3	4	98	1	0	0	0	0	1	0	0	0	9496	826	29	2	4089	2	MED1	17	37584005	Missense_Mutation	SNP	C	TCGA-A2-A3KD-01A-12D-A20S-09		37584005	43611205	7	6149										
HPS4	0	genome.wustl.edu	37	chr22	26868810	26868810	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	acttgtacctcataagctagGgaaacaggtccattgtaaaa	8	8	1	0			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	22	26868810	26868810	G	A	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	silent	c.357	p.S119	0.088	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	39	0	0	26	7	21.21	-	-	-	A	26868810	G	A	26868810	2	1	98	1	0	0	0	0	0	0	0	1	7392	1219	43	4		4	HPS4	22	26868810	Silent	SNP	G	TCGA-A2-A3KD-01A-12D-A20S-09		26868810	24435756	8	6150										
CXCR3	0	genome.wustl.edu	37	chrX	70837002	70837002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	cagcgtccactgcccagagcGgcagtgtcagcaccagcagc	12	16	1	1			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	X	70837002	70837002	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.461	p.P154L	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	56	0	0	40	21	34.43	-	-	-	A	70837002	G	A	70837002	3	1	98	1	0	0	0	0	1	0	0	0	4123	1116	39	1	790	1	CXCR3	23	70837002	Missense_Mutation	SNP	G	TCGA-A2-A3KD-01A-12D-A20S-09		70837002	84433558	9	6151										
ZNF275	0	genome.wustl.edu	37	chrX	152613219	152613219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	2	0.541331764953536	2.24175824175824	NA	2.24175824175824	0.333333333333333	0.930327025915261	0	cgagtgtggcaaggccttccGtgggccctctgacctcatca	12	14	3	1			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	X	152613219	152613219	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	1	known	missense	c.1166	p.R389H	0.797	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	67	0	0	59	18	23.38	-	-	-	A	152613219	G	A	152613219	3	1	98	1	0	0	0	0	1	0	0	0	17906	1132	40	1	992	1	ZNF275	23	152613219	Missense_Mutation	SNP	G	TCGA-A2-A3KD-01A-12D-A20S-09	81776217	152613219	2657341	10	6152										
AMPD1	0	genome.wustl.edu	37	chr1	115221144	115221144	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggctgcatggatatgggtgTccacctgtatgtatattcaa	11	8	1	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	1	115221144	115221144	T	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.1001	p.D334G	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	48	0	0	43	6	12	-	-	-	C	115221144	T	C	115221144	3	2	99	1	0	0	0	0	1	0	0	0	585	1667	58	5	1377	5	AMPD1	1	115221144	Missense_Mutation	SNP	T	TCGA-A2-A3XS-01A-11D-A22X-09		115221144	134029477	1	6153										
SPTA1	0	genome.wustl.edu	37	chr1	158650380	158650380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctcccacctcacctcggcaCactcattggcatattggttc	7	16	2	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	1	158650380	158650380	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.671	p.C224Y	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	105	0	0	104	13	11.11	-	-	-	T	158650380	C	T	158650380	3	4	99	1	0	0	0	0	1	0	0	0	15207	478	17	4	6780	4	SPTA1	1	158650380	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	43429236	158650380	90600241	2	6154										
NRXN1	0	genome.wustl.edu	37	chr2	51255149	51255149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggagaagctgagctgcaggCggccgccgcgcgtcagaatc	16	12	1	3			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	2	51255149	51255149	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.263	p.R88H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	13	0	0	16	5	23.81	-	-	-	T	51255149	C	T	51255149	3	4	99	1	0	0	0	0	1	0	0	0	10738	768	27	1	4735	1	NRXN1	2	51255149	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09		51255149	191944224	3	6155										
ALPPL2	0	genome.wustl.edu	37	chr2	233274416	233274416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcaggagcagaccttcatagCgcacgtcatggccttcgccg	12	14	2	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	2	233274416	233274416	C	T	SNP	ALPPL2	ENST00000295453	human	ensembl	69_37n	1	known	missense	c.1433	p.A478V	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286	39	0	0	15	16	51.61	-	-	-	T	233274416	C	T	233274416	3	4	99	1	0	0	0	0	1	0	0	0	549	768	27	1	1475	1	ALPPL2	2	233274416	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	182019267	233274416	9924957	4	6156										
ITPR1	0	genome.wustl.edu	37	chr3	4821278	4821278	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccatcatggaaagcaggcaCgacagtgaaaacgcagagag	13	9	1	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	4821278	4821278	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	silent	c.6291	p.H2097	0.986	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	59	0	0	64	11	14.47	-	-	-	T	4821278	C	T	4821278	2	4	99	1	0	0	0	0	0	0	0	1	7974	535	19	1		1	ITPR1	3	4821278	Silent	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09		4821278	193201152	5	6157										
KAT2B	0	genome.wustl.edu	37	chr3	20167543	20167543	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggctggttggcctacagaaCgttttctcccaccagctgcc	10	14	1	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	20167543	20167543	C	T	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	silent	c.1560	p.N520	0.918	pirsf_Hist_acetylase_PCAF,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	81	0	0	78	13	14.29	-	-	-	T	20167543	C	T	20167543	2	4	99	1	0	0	0	0	0	0	0	1	8036	535	19	1		1	KAT2B	3	20167543	Silent	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	15346265	20167543	177854887	6	6158										
PROS1	0	genome.wustl.edu	37	chr3	93619729	93619729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctgggatgttcttgcacaCagctgtgccacaaatgcttg	10	11	1	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	93619729	93619729	C	T	SNP	PROS1	ENST00000394236	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	0.998	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	76	0	0	38	39	50.65	-	-	-	T	93619729	C	T	93619729	3	4	99	1	0	0	0	0	1	0	0	0	12639	478	17	4	1420	4	PROS1	3	93619729	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	73452186	93619729	104402701	7	6159										
NAA11	0	genome.wustl.edu	37	chr4	80246828	80246828	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgaggtgatatggccatgCgggacatcatctggttcctc	13	9	2	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	4	80246828	80246828	C	T	SNP	NAA11	ENST00000286794	human	ensembl	69_37n	-1	known	silent	c.204	p.P68	0.615	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269	34	0	0	34	8	19.05	-	-	-	T	80246828	C	T	80246828	2	4	99	1	0	0	0	0	0	0	0	1	10189	755	27	1		1	NAA11	4	80246828	Silent	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09		80246828	110907448	8	6160										
GRID2	0	genome.wustl.edu	37	chr4	94138242	94138242	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgcgtctttgttctttttgAtctcattatagaaaaatttc	5	6	3	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	4	94138242	94138242	A	T	SNP	GRID2	ENST00000505687	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	8	0	0	4	4	50	-	-	-	T	94138242	A	T	94138242	1	4	99	0	1	0	0	0	0	0	0	0	6823	348	12	5		5	GRID2	4	94138242	RNA	SNP	A	TCGA-A2-A3XS-01A-11D-A22X-09	13891414	94138242	97016034	9	6161										
NDUFS6	0	genome.wustl.edu	37	chr5	1814783	1814783	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgaaaaccccctttcaactgTgaagtggtgggcggcatgtt	12	10	1	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	5	1814783	1814783	T	C	SNP	NDUFS6	ENST00000469176	human	ensembl	69_37n	1	putative	nonstop	c.517	p.*173R	0.001	NULL	pfam_Znf_CHCC	-	no_errors	NDUFS6	HGNC	ENSG00000145494	18	0	0	14	4	22.22	-	-	-	C	1814783	T	C	1814783	4	2	99	1	0	0	0	0	0	0	0	0	10368	1711	59	5		5	NDUFS6	5	1814783	Nonstop_Mutation	SNP	T	TCGA-A2-A3XS-01A-11D-A22X-09		1814783	179100477	10	6162										
ELN	0	genome.wustl.edu	37	chr7	73457489	73457489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagccggagtgaagcctgggAaagtgccgggtcagtgcgga	19	8	1	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	7	73457489	73457489	A	G	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.418	p.K140E	1.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	38	0	0	23	17	42.5	-	-	-	G	73457489	A	G	73457489	3	3	99	1	0	0	0	0	1	0	0	0	5108	247	9	5	463	5	ELN	7	73457489	Missense_Mutation	SNP	A	TCGA-A2-A3XS-01A-11D-A22X-09		73457489	85681174	11	6163										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	32	0	0	41	7	14.58	-	-	-	-	150884268	AG	-	150884267	7	5	99	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-A2-A3XS-01A-11D-A22X-09	77426778	150884267	8254396	12	6164										
PTK2B	0	genome.wustl.edu	37	chr8	27287611	27287611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaccacctatttctccaggCggttcttcaaggatatgccc	7	15	3	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	8	27287611	27287611	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	missense	c.553	p.R185W	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	127	0	0	84	20	19.23	-	-	-	T	27287611	C	T	27287611	3	4	99	1	0	0	0	0	1	0	0	0	12844	782	27	1	571	1	PTK2B	8	27287611	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09		27287611	119076411	13	6165										
LMX1B	0	genome.wustl.edu	37	chr9	129458653	129458653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcttcctcggctcctcagacGtgggctccctgcaggcccgc	12	18	1	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	9	129458653	129458653	G	C	SNP	LMX1B	ENST00000355497	human	ensembl	69_37n	1	known	missense	c.1144	p.V382L	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1B	HGNC	ENSG00000136944	39	0	0	21	27	56.25	-	-	-	C	129458653	G	C	129458653	3	2	99	1	0	0	0	0	1	0	0	0	8918	1145	40	3	1195	3	LMX1B	9	129458653	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09		129458653	11754778	14	6166										
CIZ1	0	genome.wustl.edu	37	chr9	130940822	130940822	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccccaggcccaagagctgcCttctccgtccgcagccagaa	9	18	1	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	9	130940822	130940822	C	T	SNP	CIZ1	ENST00000475471	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CIZ1	HGNC	ENSG00000148337	34	0	0	25	4	13.79	-	-	-	T	130940822	C	T	130940822	1	4	99	0	1	0	0	0	0	0	0	0	3471	696	24	4		4	CIZ1	9	130940822	RNA	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	1482169	130940822	10272609	15	6167										
LRRC32	0	genome.wustl.edu	37	chr11	76377014	76377014	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcatggctctgtgtaaggcGgagaggaaaggggaacactg	16	7	2	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	11	76377014	76377014	G	A	SNP	LRRC32	ENST00000464145	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC32	HGNC	ENSG00000137507	50	0	0	22	17	43.59	-	-	-	A	76377014	G	A	76377014	1	1	99	0	1	0	0	0	0	0	0	0	9053	1131	39	1		1	LRRC32	11	76377014	RNA	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09		76377014	58629502	16	6168										
RPS25	0	genome.wustl.edu	37	chr11	118888095	118888095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tactaaggagctcctgaaggGctgccctggccagggagcct	14	12	0	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	11	118888095	118888095	G	C	SNP	RPS25	ENST00000527673	human	ensembl	69_37n	-1	known	missense	c.260	p.A87G	1.000	pfam_Ribosomal_S25	pfam_Ribosomal_S25	-	no_errors	RPS25	HGNC	ENSG00000118181	48	0	0	35	11	23.91	-	-	-	C	118888095	G	C	118888095	3	2	99	1	0	0	0	0	1	0	0	0	13722	1203	42	4	125	4	RPS25	11	118888095	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09	42511081	118888095	16118421	17	6169										
RB1	0	genome.wustl.edu	37	chr13	48947596	48947597	+	Frame_Shift_Ins	INS	-	-	AA													0	0	1	0	0	0	1	1	0	tttaaattcagcaagtgatcINSaaccttcagaaaatctgatt							TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	48947596	48947597	-	AA	INS	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_ins	c.1183_1184	p.P396fs	1.000:1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	27	0	0	32	17	34.69	-	-	-	AA	48947597	-	AA	48947596	7	5	99	1	0	1	1	0	0	0	0	0	13181	827	29	0	1229	0	RB1	13	48947596	Frame_Shift_Ins	INS	-	TCGA-A2-A3XS-01A-11D-A22X-09		48947596	66222282	18	6170	47	2								
RB1	0	genome.wustl.edu	37	chr13	48947599	48947599	+	Missense_Mutation	SNP	C	C	T													0	0	1	0	0	0	1	1	0	taaattcagcaagtgatcaaCcttcagaaaatctgatttcc							TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	48947599	48947599	C	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	missense	c.1186	p.P396S	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	27	0	0	30	19	38	-	-	-	T	48947599	C	T	48947599	3	4	99	1	0	0	0	0	1	0	0	0	13181	507	18	4	1232	4	RB1	13	48947599	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	3	48947599	66222279	19	6171	47	2								
PCDH20	0	genome.wustl.edu	37	chr13	61987039	61987039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcctggtccattagcaaggAtggtgagcttgtgggactcc	14	9	0	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	61987039	61987039	A	G	SNP	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	missense	c.1193	p.I398T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	37	0	0	15	18	54.55	-	-	-	G	61987039	A	G	61987039	3	3	99	1	0	0	0	0	1	0	0	0	11588	333	12	5	1666	5	PCDH20	13	61987039	Missense_Mutation	SNP	A	TCGA-A2-A3XS-01A-11D-A22X-09	13039440	61987039	53182839	20	6172										
FARP1	0	genome.wustl.edu	37	chr13	99088137	99088137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agttcagaatcattgtgttcGgaggagataaagcaatcctc	10	7	2	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	99088137	99088137	G	A	SNP	FARP1	ENST00000423063	human	ensembl	69_37n	1	known	missense	c.359	p.R120Q	0.000	NULL	superfamily_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FARP1	HGNC	ENSG00000152767	115	0	0	184	32	14.81	-	-	-	A	99088137	G	A	99088137	3	1	99	1	0	0	0	0	1	0	0	0	5722	1131	39	1		1	FARP1	13	99088137	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09	37101098	99088137	16081741	21	6173										
CACNA1H	0	genome.wustl.edu	37	chr16	1252141	1252141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcgccaccttccccaggccGcggaccccccgacgcagagt	10	21	0	1			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	16	1252141	1252141	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.1691	p.R564H	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	12	0	0	11	4	26.67	-	-	-	A	1252141	G	A	1252141	3	1	99	1	0	0	0	0	1	0	0	0	2570	1087	38	1	1721	1	CACNA1H	16	1252141	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09		1252141	89102612	22	6174										
TUBB3	0	genome.wustl.edu	37	chr16	90001580	90001580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcggagtcaccacctccttgCgcttcccgggccagctcaac	10	18	2	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	16	90001580	90001580	C	T	SNP	TUBB3	ENST00000315491	human	ensembl	69_37n	1	known	missense	c.721	p.R241C	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Clone_based_vega_gene	ENSG00000258947	142	0	0	113	27	19.29	-	-	-	T	90001580	C	T	90001580	3	4	99	1	0	0	0	0	1	0	0	0	16854	768	27	1	735	1	TUBB3	16	90001580	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	88749439	90001580	353173	23	6175										
TP53	0	genome.wustl.edu	37	chr17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	cggttcatgccgcccatgcaGgaactgttacacatgtagtt							TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	112	0	0	64	46	41.07	-	-	-	-	7577558	G	-	7577558	7	5	99	1	0	1	0	1	0	0	0	0	16477	987	35	0	567	0	TP53	17	7577558	Frame_Shift_Del	DEL	G	TCGA-A2-A3XS-01A-11D-A22X-09		7577558	73617652	24	6176										
FASN	0	genome.wustl.edu	37	chr17	80047015	80047015	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggatagaggtgctgagccAgcgggctgaacgtggcttcg	19	8	0	3			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	17	80047015	80047015	A	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.2134	p.W712R	1.000	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,smart_PKS_acyl_transferase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	139	0	0	52	85	62.04	-	-	-	T	80047015	A	T	80047015	3	4	99	1	0	0	0	0	1	0	0	0	5729	188	7	5	5521	5	FASN	17	80047015	Missense_Mutation	SNP	A	TCGA-A2-A3XS-01A-11D-A22X-09	72469457	80047015	1148195	25	6177										
ADAT3	0	genome.wustl.edu	37	chr19	1912236	1912236	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctggtgctggcctacgccGcgcccgtcctggacaagcgc	14	16	0	0			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	1912236	1912236	G	T	SNP	ADAT3	ENST00000329478	human	ensembl	69_37n	1	known	missense	c.142	p.A48S	0.675	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT3	HGNC	ENSG00000213638	13	0	0	5	7	58.33	-	-	-	T	1912236	G	T	1912236	3	4	99	1	0	0	0	0	1	0	0	0	286	1087	38	3	144	3	ADAT3	19	1912236	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09		1912236	57216747	26	6178										
KLC3	0	genome.wustl.edu	37	chr19	45848849	45848849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcagggctgggcccagagcGcctgagccctgaggagctgg	18	12	0	3			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	45848849	45848849	G	A	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	1	known	missense	c.92	p.R31H	0.999	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	23	0	0	10	7	41.18	-	-	-	A	45848849	G	A	45848849	3	1	99	1	0	0	0	0	1	0	0	0	8388	1087	38	1	52	1	KLC3	19	45848849	Missense_Mutation	SNP	G	TCGA-A2-A3XS-01A-11D-A22X-09	43936613	45848849	13280134	27	6179										
ZNF613	0	genome.wustl.edu	37	chr19	52443551	52443551	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaaggacctgtaccgagaCgtgatgttggagaactatag	13	7	0	4			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	52443551	52443551	C	T	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	silent	c.105	p.D35	0.958	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	112	0	0	104	26	20	-	-	-	T	52443551	C	T	52443551	2	4	99	1	0	0	0	0	0	0	0	1	18134	535	19	1		1	ZNF613	19	52443551	Silent	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09	6594702	52443551	6685432	28	6180										
F8	0	genome.wustl.edu	37	chrX	154156942	154156942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgttttcttttgaaagctgCgggggctctgattttcatcc	11	8	3	2			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	X	154156942	154156942	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5123	p.R1708H	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	50	0	0	71	9	11.25	-	-	-	T	154156942	C	T	154156942	3	4	99	1	0	0	0	0	1	0	0	0	5387	768	27	1	2012	1	F8	23	154156942	Missense_Mutation	SNP	C	TCGA-A2-A3XS-01A-11D-A22X-09		154156942	1113618	29	6181										
C1orf127	0	genome.wustl.edu	37	chr1	11026510	11026510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gccacatttagcaagagaagAatccaggtggtcaggggacc	13	9	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	11026510	11026510	A	G	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.277	p.S93P	0.001	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	40	0	0	41	11	21.15	-	-	-	G	11026510	A	G	11026510	3	3	100	1	0	0	0	0	1	0	0	0	2013	246	9	5	2230	5	C1orf127	1	11026510	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09		11026510	238224111	1	6182										
CASP9	0	genome.wustl.edu	37	chr1	15844722	15844722	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggtaaggttttctagggttgGcttcgacaactttgctgctt	12	7	1	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	15844722	15844722	G	C	SNP	CASP9	ENST00000333868	human	ensembl	69_37n	-1	known	missense	c.301	p.P101A	0.000	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP9	HGNC	ENSG00000132906	162	0	0	125	41	24.7	-	-	-	C	15844722	G	C	15844722	3	2	100	1	0	0	0	0	1	0	0	0	2704	1203	42	4	981	4	CASP9	1	15844722	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	4818212	15844722	233405899	2	6183										
IGSF21	0	genome.wustl.edu	37	chr1	18691740	18691740	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tatttcaaacgagatggggaAccaatcgacgcagtgcccct	10	11	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	18691740	18691740	A	G	SNP	IGSF21	ENST00000412684	human	ensembl	69_37n	1	known	missense	c.421	p.T141A	0.266	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	IGSF21	HGNC	ENSG00000117154	30	0	0	17	7	29.17	-	-	-	G	18691740	A	G	18691740	3	3	100	1	0	0	0	0	1	0	0	0	7653	40	2	5	586	5	IGSF21	1	18691740	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	2847018	18691740	230558881	3	6184										
MACF1	0	genome.wustl.edu	37	chr1	39950403	39950403	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgccaaaactaatcgggcagGtaagtacctgccccgtgacc	10	13	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	39950403	39950403	G	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	splice_site	c.16036+1	e92+1	1.000	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603	26	0	0	38	8	17.39	-	-	-	A	39950403	G	A	39950403	5	1	100	1	0	0	0	0	0	0	1	0	9211	1275	44	4	22580	4	MACF1	1	39950403	Splice_Site	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	21258663	39950403	209300218	4	6185										
TOE1	0	genome.wustl.edu	37	chr1	45809422	45809422	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aacagaggtattttgggtctCtctagcctgaaatgtcatcc	9	9	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	45809422	45809422	C	G	SNP	TOE1	ENST00000495703	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TOE1	HGNC	ENSG00000132773	17	0	0	18	6	25	-	-	-	G	45809422	C	G	45809422	1	3	100	0	1	0	0	0	0	0	0	0	16444	928	32	2		2	TOE1	1	45809422	RNA	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	5859019	45809422	203441199	5	6186										
LRRC8C	0	genome.wustl.edu	37	chr1	90179573	90179573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	accagtgttctgtcaaaatcCacagtgcggcgctctctttc	8	13	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	90179573	90179573	C	T	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.1444	p.H482Y	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	40	0	0	43	10	18.87	-	-	-	T	90179573	C	T	90179573	3	4	100	1	0	0	0	0	1	0	0	0	9089	594	21	4	1450	4	LRRC8C	1	90179573	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	44370151	90179573	159071048	6	6187										
GFI1	0	genome.wustl.edu	37	chr1	92945969	92945969	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cgaaggtcttgccgcacatcTcgcaggcaaagggtctggta	13	11	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	92945969	92945969	T	G	SNP	GFI1	ENST00000294702	human	ensembl	69_37n	-1	known	missense	c.860	p.E287A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1	HGNC	ENSG00000162676	74	0	0	97	34	25.95	-	-	-	G	92945969	T	G	92945969	3	3	100	1	0	0	0	0	1	0	0	0	6391	1551	54	5	420	5	GFI1	1	92945969	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	2766396	92945969	156304652	7	6188										
SPAG17	0	genome.wustl.edu	37	chr1	118584483	118584483	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tcttctgttacttcttggatCttgacttgttcttctttaga	6	8	6	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	118584483	118584483	C	G	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.2997	p.K999N	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	157	0	0	113	53	31.93	-	-	-	G	118584483	C	G	118584483	3	3	100	1	0	0	0	0	1	0	0	0	15070	912	32	2	3786	2	SPAG17	1	118584483	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	25638514	118584483	130666138	8	6189										
SEMA4A	0	genome.wustl.edu	37	chr1	156146717	156146717	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gagagcaacacctccagtctCccaaggaatgcaggacctct	9	14	2	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	156146717	156146717	C	G	SNP	SEMA4A	ENST00000355014	human	ensembl	69_37n	1	known	missense	c.2215	p.P739A	0.034	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4A	HGNC	ENSG00000196189	74	0	0	106	62	36.9	-	-	-	G	156146717	C	G	156146717	3	3	100	1	0	0	0	0	1	0	0	0	14119	855	30	2	2269	2	SEMA4A	1	156146717	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	37562234	156146717	93103904	9	6190										
C1orf61	0	genome.wustl.edu	37	chr1	156386464	156386464	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	acaacggccattctgccacgCggactccaacctcttccctt	6	18	2	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	156386464	156386464	C	T	SNP	C1orf61	ENST00000462458	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf61	HGNC	ENSG00000125462	22	0	0	19	17	47.22	-	-	-	T	156386464	C	T	156386464	1	4	100	0	1	0	0	0	0	0	0	0	2072	783	27	1		1	C1orf61	1	156386464	RNA	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	239747	156386464	92864157	10	6191										
TPR	0	genome.wustl.edu	37	chr1	186322968	186322968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gatatccttcaacattatctTgcagcatttcataactggta	5	9	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	186322968	186322968	T	A	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.2186	p.Q729L	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	88	0	0	116	18	13.43	-	-	-	A	186322968	T	A	186322968	3	1	100	1	0	0	0	0	1	0	0	0	16512	1812	63	5	5041	5	TPR	1	186322968	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	29936504	186322968	62927653	11	6192										
PIGR	0	genome.wustl.edu	37	chr1	207110625	207110625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	caaaggctggggccctcttcCccagggtgttgacgaccacg	13	14	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	1	207110625	207110625	C	T	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.860	p.G287E	0.068	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	62	0	0	99	29	22.66	-	-	-	T	207110625	C	T	207110625	3	4	100	1	0	0	0	0	1	0	0	0	11971	623	22	4	1466	4	PIGR	1	207110625	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	20787657	207110625	42139996	12	6193										
C2orf71	0	genome.wustl.edu	37	chr2	29295688	29295688	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctgtcctcgctgtcactaagAgatgaagcgtccatcggcct	10	13	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	29295688	29295688	A	G	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.1440	p.S480	0.005	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	121	0	0	158	30	15.87	-	-	-	G	29295688	A	G	29295688	2	3	100	1	0	0	0	0	0	0	0	1	2211	291	11	5		5	C2orf71	2	29295688	Silent	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09		29295688	213903685	13	6194										
ACVR1	0	genome.wustl.edu	37	chr2	158655952	158655952	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cacttaccttccatactaggGgaggggagagcaatcatgat	11	9	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	158655952	158655952	G	T	SNP	ACVR1	ENST00000263640	human	ensembl	69_37n	-1	known	silent	c.54	p.S18	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR1	HGNC	ENSG00000115170	28	0	0	25	4	13.79	-	-	-	T	158655952	G	T	158655952	2	4	100	1	0	0	0	0	0	0	0	1	220	1219	43	4		4	ACVR1	2	158655952	Silent	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	129360264	158655952	84543421	14	6195										
TTN	0	genome.wustl.edu	37	chr2	179428450	179428450	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	caggtgttgagggaggacctGgtggcttataaggattacag	16	5	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	179428450	179428450	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.74705	p.P24902Q	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	99	0	0	91	20	18.02	-	-	-	T	179428450	G	T	179428450	3	4	100	1	0	0	0	0	1	0	0	0	16832	1348	47	4	25718	4	TTN	2	179428450	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	20772498	179428450	63770923	15	6196										
TTN	0	genome.wustl.edu	37	chr2	179560939	179560939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tctgaacctctttctttctgGttatagtcattatttttact	4	8	5	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	179560939	179560939	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.27128	p.T9043N	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	59	0	0	43	12	21.82	-	-	-	T	179560939	G	T	179560939	3	4	100	1	0	0	0	0	1	0	0	0	16832	1261	44	4	73665	4	TTN	2	179560939	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	132489	179560939	63638434	16	6197										
TTN	0	genome.wustl.edu	37	chr2	179659960	179659960	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gatgggggatgtggagattcTtgctgctggagacacggacc	17	7	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	179659960	179659960	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.934	p.R312G	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	34	0	0	38	9	19.15	-	-	-	C	179659960	T	C	179659960	3	2	100	1	0	0	0	0	1	0	0	0	16832	1617	56	5	110478	5	TTN	2	179659960	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	99021	179659960	63539413	17	6198										
ERBB4	0	genome.wustl.edu	37	chr2	212288987	212288987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gcgttggaattccatcatagGgttttcctccaaaggtcatc	9	10	2	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	212288987	212288987	G	C	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.2759	p.P920R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	69	0	0	59	10	14.49	-	-	-	C	212288987	G	C	212288987	3	2	100	1	0	0	0	0	1	0	0	0	5246	1232	43	4	1191	4	ERBB4	2	212288987	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	32629027	212288987	30910386	18	6199										
FARP2	0	genome.wustl.edu	37	chr2	242381025	242381025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gttctgtctgtgctggggggCagagtttcagtgccttagac	15	8	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	2	242381025	242381025	C	A	SNP	FARP2	ENST00000413432	human	ensembl	69_37n	1	novel	missense	c.526	p.Q176K	0.542	NULL	pfam_FERM-adjacent	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	FARP2	HGNC	ENSG00000006607	59	0	0	39	15	27.78	-	-	-	A	242381025	C	A	242381025	3	1	100	1	0	0	0	0	1	0	0	0	5723	725	25	4		4	FARP2	2	242381025	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	30092038	242381025	818348	19	6200										
PRRT3	0	genome.wustl.edu	37	chr3	9991723	9991723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gcctgggaaagcccctccccAgggcagggccagtccccagg	14	17	0	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	3	9991723	9991723	A	G	SNP	PRRT3	ENST00000295984	human	ensembl	69_37n	-1	known	missense	c.77	p.L26P	0.983	NULL	NULL	-	no_errors	PRRT3	HGNC	ENSG00000163704	44	0	0	51	14	21.54	-	-	-	G	9991723	A	G	9991723	3	3	100	1	0	0	0	0	1	0	0	0	12691	188	7	5	2880	5	PRRT3	3	9991723	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09		9991723	188030707	20	6201										
KLHL5	0	genome.wustl.edu	37	chr4	39104910	39104910	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tatatattactatgaaggagCaacaagcattgaaaagtatg	8	4	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	4	39104910	39104910	C	A	SNP	KLHL5	ENST00000359687	human	ensembl	69_37n	1	known	missense	c.1442	p.A481E	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL5	HGNC	ENSG00000109790	39	0	0	31	13	29.55	-	-	-	A	39104910	C	A	39104910	3	1	100	1	0	0	0	0	1	0	0	0	8445	710	25	4	1468	4	KLHL5	4	39104910	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		39104910	152049366	21	6202										
GABRG1	0	genome.wustl.edu	37	chr4	46125919	46125919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggggagaagagaaaagctttCaaaggacccatcggaatcgc	13	8	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	4	46125919	46125919	C	G	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.12	p.L4F	0.989	prints_GABBAg1_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	16	0	0	9	6	40	-	-	-	G	46125919	C	G	46125919	3	3	100	1	0	0	0	0	1	0	0	0	6220	825	29	2	1421	2	GABRG1	4	46125919	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	7021009	46125919	145028357	22	6203										
FBXW7	0	genome.wustl.edu	37	chr4	153271249	153271249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	caaagaaaaagagcggacctCagaaccatggtccaactttc	8	11	1	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	4	153271249	153271249	C	G	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.529	p.E177Q	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	47	0	0	20	10	33.33	-	-	-	G	153271249	C	G	153271249	3	3	100	1	0	0	0	0	1	0	0	0	5815	835	29	2	1634	2	FBXW7	4	153271249	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	107145330	153271249	37883027	23	6204										
SEMA6A	0	genome.wustl.edu	37	chr5	115823874	115823874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tataatctccgtaatccacgGcttgaacaaagtatggttct	7	9	2	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	5	115823874	115823874	G	T	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.674	p.A225D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	97	0	0	37	28	43.08	-	-	-	T	115823874	G	T	115823874	3	4	100	1	0	0	0	0	1	0	0	0	14127	1203	42	4	2462	4	SEMA6A	5	115823874	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09		115823874	65091386	24	6205										
C5orf20	0	genome.wustl.edu	37	chr5	134782577	134782577	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aggaccccagctggcaaggtTttgttcctccctggagggta	13	11	0	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	5	134782577	134782577	T	C	SNP	C5orf20	ENST00000503143	human	ensembl	69_37n	-1	known	silent	c.222	p.K74	0.001	NULL	NULL	-	no_errors	C5orf20	HGNC	ENSG00000251380	43	0	0	17	15	46.88	-	-	-	C	134782577	T	C	134782577	2	2	100	1	0	0	0	0	0	0	0	1	2305	1838	64	5		5	C5orf20	5	134782577	Silent	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	18958703	134782577	46132683	25	6206										
ABT1	0	genome.wustl.edu	37	chr6	26598278	26598278	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cgcgtggcggccagtctacaCaacacgcctatgggtgcccg	13	15	1	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	26598278	26598278	C	A	SNP	ABT1	ENST00000274849	human	ensembl	69_37n	1	known	missense	c.378	p.H126Q	1.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109	30	0	0	28	5	15.15	-	-	-	A	26598278	C	A	26598278	3	1	100	1	0	0	0	0	1	0	0	0	101	477	17	4	384	4	ABT1	6	26598278	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		26598278	144516789	26	6207										
TRIM26	0	genome.wustl.edu	37	chr6	30153878	30153878	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gcccagatgccggaggaggaGaggcgcagcgcccacacgcc	16	15	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	30153878	30153878	G	C	SNP	TRIM26	ENST00000437089	human	ensembl	69_37n	-1	known	silent	c.1395	p.L465	0.044	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127	58	0	0	64	24	27.27	-	-	-	C	30153878	G	C	30153878	2	2	100	1	0	0	0	0	0	0	0	1	16596	929	33	2		2	TRIM26	6	30153878	Silent	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	3555600	30153878	140961189	27	6208										
HLA-DOA	0	genome.wustl.edu	37	chr6	32975108	32975108	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cccaatgcctgaggagtggcGcatccaggccccagtgctcc	12	16	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	32975108	32975108	G	C	SNP	HLA-DOA	ENST00000229829	human	ensembl	69_37n	-1	known	missense	c.593	p.A198G	0.000	pfam_Ig_C1-set,smart_Ig_C1-set	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DOA	HGNC	ENSG00000204252	54	0	0	27	15	35.71	-	-	-	C	32975108	G	C	32975108	3	2	100	1	0	0	0	0	1	0	0	0	7251	1087	38	3	171	3	HLA-DOA	6	32975108	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	2821230	32975108	138139959	28	6209										
ANKS1A	0	genome.wustl.edu	37	chr6	35050934	35050934	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cactgctcgcccccacagtaTctgggctccatgctgatcaa	8	16	2	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	35050934	35050934	T	C	SNP	ANKS1A	ENST00000360359	human	ensembl	69_37n	1	known	silent	c.2838	p.Y946	0.867	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999	46	0	0	32	14	30.43	-	-	-	C	35050934	T	C	35050934	2	2	100	1	0	0	0	0	0	0	0	1	687	1442	50	5		5	ANKS1A	6	35050934	Silent	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	2075826	35050934	136064133	29	6210										
ZNF451	0	genome.wustl.edu	37	chr6	56965700	56965700	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gaatctttggcctcttctgaGgtcaaagagaatttacgtat	9	7	4	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	56965700	56965700	G	C	SNP	ZNF451	ENST00000370708	human	ensembl	69_37n	1	known	missense	c.486	p.E162D	1.000	NULL	pfam_LAP2alpha	-	no_errors	ZNF451	HGNC	ENSG00000112200	55	0	0	67	33	33	-	-	-	C	56965700	G	C	56965700	3	2	100	1	0	0	0	0	1	0	0	0	18018	1015	35	4		4	ZNF451	6	56965700	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	21914766	56965700	114149367	30	6211										
RAB23	0	genome.wustl.edu	37	chr6	57054942	57054942	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aaatctgtaacaatatatttAggcatttcatttatgttttc	4	5	2	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	57054942	57054942	A	G	SNP	RAB23	ENST00000344445	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	RAB23	HGNC	ENSG00000112210	17	0	0	5	12	70.59	-	-	-	G	57054942	A	G	57054942	1	3	100	0	1	0	0	0	0	0	0	0	12993	435	15	5		5	RAB23	6	57054942	RNA	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	89242	57054942	114060125	31	6212										
SEC63	0	genome.wustl.edu	37	chr6	108279120	108279120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	atctcggggccagaggtagtAtgtcgccgggatcacgatga	15	9	2	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	108279120	108279120	A	G	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	missense	c.94	p.Y32H	0.998	NULL	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	16	0	0	12	6	33.33	-	-	-	G	108279120	A	G	108279120	3	3	100	1	0	0	0	0	1	0	0	0	14093	449	16	5	2272	5	SEC63	6	108279120	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	51224178	108279120	62835947	32	6213										
AKD1	0	genome.wustl.edu	37	chr6	109931716	109931716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctatcaagtcttctgttgggGctaaagtaaaataagctgat	9	6	3	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	109931716	109931716	G	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.1694	p.A565D	0.000	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	81	0	0	67	36	34.95	-	-	-	T	109931716	G	T	109931716	3	4	100	1	0	0	0	0	1	0	0	0	460	1217	42	4	4141	4	AKD1	6	109931716	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	1652596	109931716	61183351	33	6214										
AIG1	0	genome.wustl.edu	37	chr6	143382177	143382177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	accagacctacggagggagcTggaaattcctgacgttcatt	11	10	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	6	143382177	143382177	T	A	SNP	AIG1	ENST00000275235	human	ensembl	69_37n	1	known	missense	c.115	p.W39R	1.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	AIG1	HGNC	ENSG00000146416	70	0	0	55	40	42.11	-	-	-	A	143382177	T	A	143382177	3	1	100	1	0	0	0	0	1	0	0	0	429	1580	55	5	117	5	AIG1	6	143382177	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	33450461	143382177	27732890	34	6215										
GPNMB	0	genome.wustl.edu	37	chr7	23300074	23300074	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tttgggggatgtatcttttaGatcagattcctgtgtttgtg	12	4	2	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	7	23300074	23300074	G	T	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	splice_site	c.701-1	e6-1	1.000	-	-	-	no_errors	GPNMB	HGNC	ENSG00000136235	36	0	0	30	11	26.83	-	-	-	T	23300074	G	T	23300074	5	4	100	1	0	0	0	0	0	0	1	0	6670	956	33	2	722	2	GPNMB	7	23300074	Splice_Site	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09		23300074	135838589	35	6216										
DFNA5	0	genome.wustl.edu	37	chr7	24745946	24745946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gctgctgccggggcttcagcTcccccagcaccgccactgtg	12	18	1	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	7	24745946	24745946	T	C	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	missense	c.1040	p.E347G	0.956	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	41	0	0	15	19	55.88	-	-	-	C	24745946	T	C	24745946	3	2	100	1	0	0	0	0	1	0	0	0	4490	1551	54	5	462	5	DFNA5	7	24745946	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	1445872	24745946	134392717	36	6217										
ANLN	0	genome.wustl.edu	37	chr7	36450289	36450289	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gacacatcttcatctactacCcatttagcacaacagctcaa	3	14	4	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	7	36450289	36450289	C	G	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	silent	c.1263	p.T421	0.110	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	56	0	0	47	16	25.4	-	-	-	G	36450289	C	G	36450289	2	3	100	1	0	0	0	0	0	0	0	1	693	610	22	4		4	ANLN	7	36450289	Silent	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	11704343	36450289	122688374	37	6218										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99110156	99110156	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tcctgcagcccccatcccctGaccgtggacacccagcctga	8	20	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	7	99110156	99110156	G	A	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	silent	c.495	p.L165	0.002	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	137	0	0	112	42	27.27	-	-	-	A	99110156	G	A	99110156	2	1	100	1	0	0	0	0	0	0	0	1	17786	1277	45	2		2	ZKSCAN5	7	99110156	Silent	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	62659867	99110156	60028507	38	6219										
CPA6	0	genome.wustl.edu	37	chr8	68397009	68397009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tctcatggctgggtcactctTatatgttagaagagcctaaa	9	8	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	8	68397009	68397009	T	C	SNP	CPA6	ENST00000297770	human	ensembl	69_37n	-1	known	missense	c.652	p.K218E	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078	27	0	0	33	5	13.16	-	-	-	C	68397009	T	C	68397009	3	2	100	1	0	0	0	0	1	0	0	0	3824	1763	61	5	681	5	CPA6	8	68397009	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09		68397009	77967013	39	6220										
FREM1	0	genome.wustl.edu	37	chr9	14819423	14819423	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgacctccctcagtcactttCagagggttggtgaacgccta	10	12	3	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	9	14819423	14819423	C	G	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.2358	p.L786	0.998	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	66	0	0	96	25	20.66	-	-	-	G	14819423	C	G	14819423	2	3	100	1	0	0	0	0	0	0	0	1	6093	813	29	2		2	FREM1	9	14819423	Silent	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		14819423	126394008	40	6221										
ZNF169	0	genome.wustl.edu	37	chr9	97062216	97062216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tcttcccaagctcatctgcaGgaggtgacttccaactagaa	8	12	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	9	97062216	97062216	G	A	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	1	known	missense	c.376	p.G126R	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	27	0	0	28	8	22.22	-	-	-	A	97062216	G	A	97062216	3	1	100	1	0	0	0	0	1	0	0	0	17838	1001	35	4	390	4	ZNF169	9	97062216	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	82242793	97062216	44151215	41	6222										
NOTCH1	0	genome.wustl.edu	37	chr9	139405185	139405185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggcagcggtagccgccgtggGtgttctggcaggatgcgccg	19	11	1	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	9	139405185	139405185	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.2660	p.T887I	0.996	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	41	0	0	19	14	42.42	-	-	-	A	139405185	G	A	139405185	3	1	100	1	0	0	0	0	1	0	0	0	10619	1261	44	4	5079	4	NOTCH1	9	139405185	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	42342969	139405185	1808246	42	6223										
WAC	0	genome.wustl.edu	37	chr10	28872359	28872359	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tctccacaagaaaattcacaCaaccacagtgctcttcatag	4	13	4	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	28872359	28872359	C	G	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.306	p.H102Q	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	40	0	0	39	13	25	-	-	-	G	28872359	C	G	28872359	3	3	100	1	0	0	0	0	1	0	0	0	17344	477	17	4	320	4	WAC	10	28872359	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		28872359	106662388	43	6224										
MTPAP	0	genome.wustl.edu	37	chr10	30653864	30653864	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctcacacccaccccacccccAcccccacagaggtgctgcaa	5	23	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	30653864	30653864	A	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	0.011	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	80	0	0	40	23	35.94	-	-	-	C	30653864	A	C	30653864	2	2	100	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653864	Silent	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	1781505	30653864	104880883	44	6225										
EPC1	0	genome.wustl.edu	37	chr10	32573961	32573961	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cactgtcatagtctgaatgaGctctgtccagtaagacccta	8	11	3	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	32573961	32573961	G	T	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.1409	p.A470D	1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	30	0	0	20	3	13.04	-	-	-	T	32573961	G	T	32573961	3	4	100	1	0	0	0	0	1	0	0	0	5197	971	34	4	1125	4	EPC1	10	32573961	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	1920097	32573961	102960786	45	6226										
CDH23	0	genome.wustl.edu	37	chr10	73556871	73556871	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tggtccacaggatctgtaatGgtgaagtcccccatgaatcg	11	10	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	73556871	73556871	G	C	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.6732	p.M2244I	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	110	0	0	44	34	43.59	-	-	-	C	73556871	G	C	73556871	3	2	100	1	0	0	0	0	1	0	0	0	3137	1348	47	4	7258	4	CDH23	10	73556871	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	40982910	73556871	61977876	46	6227										
ANKRD22	0	genome.wustl.edu	37	chr10	90591731	90591731	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	catagctgctgtcttctttcAcccaccgccacacttgtcca	5	17	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	90591731	90591731	A	C	SNP	ANKRD22	ENST00000371930	human	ensembl	69_37n	-1	known	missense	c.74	p.V25G	0.023	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766	103	0	0	40	33	45.21	-	-	-	C	90591731	A	C	90591731	3	2	100	1	0	0	0	0	1	0	0	0	651	159	6	5	521	5	ANKRD22	10	90591731	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	17034860	90591731	44943016	47	6228										
PKD2L1	0	genome.wustl.edu	37	chr10	102055882	102055882	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gtgggaatcccaggtaccttGatccaggcgaagaagaggtt	14	8	0	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	102055882	102055882	G	C	SNP	PKD2L1	ENST00000318222	human	ensembl	69_37n	-1	known	missense	c.1353	p.I451M	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593	77	0	0	49	18	26.87	-	-	-	C	102055882	G	C	102055882	3	2	100	1	0	0	0	0	1	0	0	0	12041	1280	45	2	1104	2	PKD2L1	10	102055882	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	11464151	102055882	33478865	48	6229										
CNNM2	0	genome.wustl.edu	37	chr10	104809536	104809536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tccattttatgaagttctggGaatcgtcaccttagaagatg	9	7	2	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	10	104809536	104809536	G	A	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	missense	c.1694	p.G565E	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	72	0	0	59	13	18.06	-	-	-	A	104809536	G	A	104809536	3	1	100	1	0	0	0	0	1	0	0	0	3643	1174	41	2	1742	2	CNNM2	10	104809536	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	2753654	104809536	30725211	49	6230										
OR10A5	0	genome.wustl.edu	37	chr11	6867817	6867817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	atagcgaggtgaagaatgccCtcagcaggaccttccacaag	11	11	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	6867817	6867817	C	T	SNP	OR10A5	ENST00000379831	human	ensembl	69_37n	1	known	missense	c.916	p.L306F	0.262	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363	31	0	0	23	16	41.03	-	-	-	T	6867817	C	T	6867817	3	4	100	1	0	0	0	0	1	0	0	0	10966	681	24	4	906	4	OR10A5	11	6867817	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		6867817	128138699	50	6231										
CKAP5	0	genome.wustl.edu	37	chr11	46775039	46775039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tcccgggcaaggctctctatCtgaaacagctatccagacat	8	13	2	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	46775039	46775039	C	G	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.4878	p.Q1626H	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	36	0	0	40	8	16.67	-	-	-	G	46775039	C	G	46775039	3	3	100	1	0	0	0	0	1	0	0	0	3475	912	32	2	1252	2	CKAP5	11	46775039	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	39907222	46775039	88231477	51	6232										
DDB2	0	genome.wustl.edu	37	chr11	47237948	47237948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctggctggcccacagatcctGccaccatgccgcagcatcgt	10	17	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	47237948	47237948	G	A	SNP	DDB2	ENST00000256996	human	ensembl	69_37n	1	known	silent	c.189	p.L63	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574	43	0	0	35	15	30	-	-	-	A	47237948	G	A	47237948	2	1	100	1	0	0	0	0	0	0	0	1	4355	1306	46	4		4	DDB2	11	47237948	Silent	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	462909	47237948	87768568	52	6233										
KCTD14	0	genome.wustl.edu	37	chr11	77728118	77728118	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gatgtgctgtgtgggcacttGcccagtgcgcaggtagtcca	15	10	0	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	77728118	77728118	G	C	SNP	KCTD14	ENST00000353172	human	ensembl	69_37n	-1	known	missense	c.289	p.Q97E	0.998	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364	37	0	0	44	16	26.67	-	-	-	C	77728118	G	C	77728118	3	2	100	1	0	0	0	0	1	0	0	0	8155	1328	46	4	482	4	KCTD14	11	77728118	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	30490170	77728118	57278398	53	6234										
TMPRSS5	0	genome.wustl.edu	37	chr11	113565113	113565113	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	caaaaagctggagacagttgGacacgaacatttgatacagg	11	7	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	113565113	113565113	G	C	SNP	TMPRSS5	ENST00000545412	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	TMPRSS5	HGNC	ENSG00000166682	34	0	0	32	16	33.33	-	-	-	C	113565113	G	C	113565113	1	2	100	0	1	0	0	0	0	0	0	0	16345	1189	41	2		2	TMPRSS5	11	113565113	RNA	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	35836995	113565113	21441403	54	6235										
TECTA	0	genome.wustl.edu	37	chr11	121016479	121016479	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aaccctgatgatgacctggaGatgcccatgggtctgcttgc	12	11	1	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	121016479	121016479	G	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.3759	p.E1253D	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	103	0	0	141	18	11.32	-	-	-	T	121016479	G	T	121016479	3	4	100	1	0	0	0	0	1	0	0	0	15842	933	33	2	3801	2	TECTA	11	121016479	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	7451366	121016479	13990037	55	6236										
OR8B4	0	genome.wustl.edu	37	chr11	124294625	124294625	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggctaggatttatcccaattAaggtgatcaagcccaagttg	10	8	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	11	124294625	124294625	A	G	SNP	OR8B4	ENST00000356130	human	ensembl	69_37n	-1	putative	missense	c.143	p.L48S	0.225	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8B4	HGNC	ENSG00000198657	24	0	0	16	5	23.81	-	-	-	G	124294625	A	G	124294625	3	3	100	1	0	0	0	0	1	0	0	0	11302	372	13	5	788	5	OR8B4	11	124294625	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	3278146	124294625	10711891	56	6237										
UTP20	0	genome.wustl.edu	37	chr12	101748661	101748661	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgaggccatggaattagagcGtgtggatgaggaagagaagg	18	3	0	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	12	101748661	101748661	G	C	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.5159	p.R1720P	0.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	40	0	0	40	13	24.53	-	-	-	C	101748661	G	C	101748661	3	2	100	1	0	0	0	0	1	0	0	0	17196	1145	40	3	5321	3	UTP20	12	101748661	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09		101748661	32103234	57	6238										
DOCK9	0	genome.wustl.edu	37	chr13	99478200	99478200	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cccactggactgcttctaaaCatgaggaaatgcatcacctg	8	12	2	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	13	99478200	99478200	C	G	SNP	DOCK9	ENST00000481051	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.907	-	-	-	no_errors	DOCK9	HGNC	ENSG00000088387	73	0	0	34	19	35.85	-	-	-	G	99478200	C	G	99478200	1	3	100	0	1	0	0	0	0	0	0	0	4729	493	17	4		4	DOCK9	13	99478200	RNA	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		99478200	15691678	58	6239										
MIPOL1	0	genome.wustl.edu	37	chr14	37739693	37739693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tttaagctggaactccaagaGaaagaaacagaagctaaaat	8	6	0	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	14	37739693	37739693	G	C	SNP	MIPOL1	ENST00000327441	human	ensembl	69_37n	1	known	missense	c.456	p.E152D	0.992	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338	12	0	0	17	4	19.05	-	-	-	C	37739693	G	C	37739693	3	2	100	1	0	0	0	0	1	0	0	0	9664	933	33	2	470	2	MIPOL1	14	37739693	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09		37739693	69609847	59	6240										
FUT8	0	genome.wustl.edu	37	chr14	65878620	65878620	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gggcggcgcgctccggtcctCccgctcagctggcggtctgg	17	16	2	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	14	65878620	65878620	C	A	SNP	FUT8	ENST00000549235	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.277	-	-	-	no_errors	FUT8	HGNC	ENSG00000033170	61	0	0	56	13	18.84	-	-	-	A	65878620	C	A	65878620	1	1	100	0	1	0	0	0	0	0	0	0	6159	870	30	2		2	FUT8	14	65878620	RNA	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	28138927	65878620	41470920	60	6241										
OR4M2	0	genome.wustl.edu	37	chr15	22369004	22369004	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aatcaacgtctctgctgtatCctggtggctctctcctggag	10	12	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	22369004	22369004	C	A	SNP	OR4M2	ENST00000332663	human	ensembl	69_37n	1	known	silent	c.429	p.I143	0.031	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974	365	0	0	308	39	11.24	-	-	-	A	22369004	C	A	22369004	2	1	100	1	0	0	0	0	0	0	0	1	11149	845	30	2		2	OR4M2	15	22369004	Silent	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		22369004	80162388	61	6242										
BUB1B	0	genome.wustl.edu	37	chr15	40491905	40491905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	taaaagaaatccaaactactCagcaagaaagaacaggtgat	7	7	1	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	40491905	40491905	C	G	SNP	BUB1B	ENST00000412359	human	ensembl	69_37n	1	known	missense	c.1420	p.Q474E	0.999	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	25	0	0	21	6	22.22	-	-	-	G	40491905	C	G	40491905	3	3	100	1	0	0	0	0	1	0	0	0	1580	827	29	2	1416	2	BUB1B	15	40491905	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	18122901	40491905	62039487	62	6243										
BUB1B	0	genome.wustl.edu	37	chr15	40498656	40498656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gactctcagcatcaagaagcTgaggtgattggggatttaca	12	7	2	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	40498656	40498656	T	C	SNP	BUB1B	ENST00000412359	human	ensembl	69_37n	1	known	missense	c.2048	p.L683P	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	105	0	0	76	35	31.53	-	-	-	C	40498656	T	C	40498656	3	2	100	1	0	0	0	0	1	0	0	0	1580	1580	55	5	2064	5	BUB1B	15	40498656	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	6751	40498656	62032736	63	6244										
LCMT2	0	genome.wustl.edu	37	chr15	43622236	43622236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggatgcagtagtctgcgctcTcaaagcacagcgcggacgcg	14	12	2	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	43622236	43622236	T	C	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.452	p.E151G	0.705	pfam_LCM_MeTrfase	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	23	0	0	14	7	33.33	-	-	-	C	43622236	T	C	43622236	3	2	100	1	0	0	0	0	1	0	0	0	8733	1551	54	5	1612	5	LCMT2	15	43622236	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	3123580	43622236	58909156	64	6245										
CCPG1	0	genome.wustl.edu	37	chr15	55664092	55664092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gtttactcaactccttagaaGgttcagtttcttgttcagca	7	9	4	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	55664092	55664092	G	T	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.605	p.P202H	0.018	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	42	0	0	35	4	10.26	-	-	-	T	55664092	G	T	55664092	3	4	100	1	0	0	0	0	1	0	0	0	2967	1000	35	4	1680	4	CCPG1	15	55664092	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	12041856	55664092	46867300	65	6246										
DAPK2	0	genome.wustl.edu	37	chr15	64200774	64200774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctttcctcctggcgatgtccTcctcagtgtcactctcacag	7	16	3	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	15	64200774	64200774	T	C	SNP	DAPK2	ENST00000261891	human	ensembl	69_37n	-1	known	missense	c.1058	p.E353G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664	87	0	0	102	26	20.31	-	-	-	C	64200774	T	C	64200774	3	2	100	1	0	0	0	0	1	0	0	0	4268	1551	54	5	58	5	DAPK2	15	64200774	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	8536682	64200774	38330618	66	6247										
UBE2I	0	genome.wustl.edu	37	chr16	1370586	1370586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gccaaggccgcctggcaggaCgggagtggaggacacaggct	18	11	0	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	16	1370586	1370586	C	T	SNP	UBE2I	ENST00000402301	human	ensembl	69_37n	1	putative	missense	c.481	p.R161W	0.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2I	HGNC	ENSG00000103275	46	0	0	28	27	49.09	-	-	-	T	1370586	C	T	1370586	3	4	100	1	0	0	0	0	1	0	0	0	16956	551	19	1		1	UBE2I	16	1370586	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		1370586	88984167	67	6248										
TMCO7	0	genome.wustl.edu	37	chr16	68901011	68901011	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gatgtgaagacacagatgagGtgtcgggccccagcttggct	15	9	0	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	16	68901011	68901011	G	T	SNP	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	missense	c.882	p.R294S	0.001	NULL	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	61	0	0	36	4	10	-	-	-	T	68901011	G	T	68901011	3	4	100	1	0	0	0	0	1	0	0	0	16096	1252	44	4	896	4	TMCO7	16	68901011	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	67530425	68901011	21453742	68	6249										
TP53	0	genome.wustl.edu	37	chr17	7578527	7578527	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gcaggtcttggccagttggcAaaacatcttgttgagggcag	14	8	2	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	17	7578527	7578527	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.403	p.C135R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	42	0	0	22	15	40.54	-	-	-	G	7578527	A	G	7578527	3	3	100	1	0	0	0	0	1	0	0	0	16477	130	5	5	895	5	TP53	17	7578527	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09		7578527	73616683	69	6250										
GAS2L2	0	genome.wustl.edu	37	chr17	34072743	34072743	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgctccttgttcccgcccaaGggcagaggtgtgtaccgccc	12	15	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	17	34072743	34072743	G	A	SNP	GAS2L2	ENST00000254466	human	ensembl	69_37n	-1	known	silent	c.1773	p.P591	0.002	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139	50	0	0	30	21	41.18	-	-	-	A	34072743	G	A	34072743	2	1	100	1	0	0	0	0	0	0	0	1	6297	987	35	4		4	GAS2L2	17	34072743	Silent	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	26494216	34072743	47122467	70	6251										
CDK5RAP3	0	genome.wustl.edu	37	chr17	46057970	46057970	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgtcctcagcttgagatcttCttagcccagagagcagtgga	11	10	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	17	46057970	46057970	C	A	SNP	CDK5RAP3	ENST00000338399	human	ensembl	69_37n	1	known	missense	c.1089	p.F363L	1.000	pfam_DUF773	pfam_DUF773	-	no_errors	CDK5RAP3	HGNC	ENSG00000108465	80	0	0	71	30	29.7	-	-	-	A	46057970	C	A	46057970	3	1	100	1	0	0	0	0	1	0	0	0	3176	912	32	2	1135	2	CDK5RAP3	17	46057970	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	11985227	46057970	35137240	71	6252										
NR2C2AP	0	genome.wustl.edu	37	chr19	19313894	19313894	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gttccacaagacctcgcaggGcttaggattgggcacagcct	12	12	0	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	19	19313894	19313894	G	A	SNP	NR2C2AP	ENST00000590907	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NR2C2AP	HGNC	ENSG00000184162	41	0	0	49	6	10.91	-	-	-	A	19313894	G	A	19313894	1	1	100	0	1	0	0	0	0	0	0	0	10697	1218	42	4		4	NR2C2AP	19	19313894	RNA	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09		19313894	39815089	72	6253										
ZNF540	0	genome.wustl.edu	37	chr19	38103256	38103256	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	taaaaccctacgaatgtaagGaatgtggaaagacctttaga	9	6	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	19	38103256	38103256	G	C	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1075	p.E359Q	0.110	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	46	0	0	26	4	13.33	-	-	-	C	38103256	G	C	38103256	3	2	100	1	0	0	0	0	1	0	0	0	18071	1175	41	2	1089	2	ZNF540	19	38103256	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	18789362	38103256	21025727	73	6254										
ZNF611	0	genome.wustl.edu	37	chr19	53208833	53208833	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ttaaaagatctgaattttgaCcaaaggtcttcccacattca	5	9	3	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	19	53208833	53208833	C	A	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.1475	p.G492V	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	39	0	0	36	4	10	-	-	-	A	53208833	C	A	53208833	3	1	100	1	0	0	0	0	1	0	0	0	18133	507	18	4	646	4	ZNF611	19	53208833	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	15105577	53208833	5920150	74	6255										
RPS9	0	genome.wustl.edu	37	chr19	54735619	54735619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gatgctccatttaaacaggcGggagcctctgattcctggcg	12	11	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	19	54735619	54735619	G	A	SNP	RPS9	ENST00000448962	human	ensembl	69_37n	1	known	missense	c.223	p.G75R	0.008	NULL	pfam_Ribosomal_S4/S9_N,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889	31	0	0	15	3	16.67	-	-	-	A	54735619	G	A	54735619	3	1	100	1	0	0	0	0	1	0	0	0	13748	1131	39	1		1	RPS9	19	54735619	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	1526786	54735619	4393364	75	6256										
JAG1	0	genome.wustl.edu	37	chr20	10621851	10621851	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	gaaacattcttcaaaatattCaaattcctcaattcactgca	2	10	5	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	20	10621851	10621851	C	G	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.2958	p.L986F	1.000	NULL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	36	0	0	32	6	15.79	-	-	-	G	10621851	C	G	10621851	3	3	100	1	0	0	0	0	1	0	0	0	7988	825	29	2	710	2	JAG1	20	10621851	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		10621851	52403669	76	6257										
PHACTR3	0	genome.wustl.edu	37	chr20	58322830	58322830	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cagcgctggagaagaagatgGccggcaggcaaggccgagag	18	9	0	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	20	58322830	58322830	G	C	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	missense	c.298	p.A100P	0.982	smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	57	0	0	31	23	42.59	-	-	-	C	58322830	G	C	58322830	3	2	100	1	0	0	0	0	1	0	0	0	11885	1203	42	4	308	4	PHACTR3	20	58322830	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	47700979	58322830	4702690	77	6258										
NRIP1	0	genome.wustl.edu	37	chr21	16337149	16337149	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tatggctattgtaagggcttCttaaattaaagaaagaagct	9	4	1	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	21	16337149	16337149	C	G	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.3365	p.R1122T	0.999	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	85	0	0	80	12	13.04	-	-	-	G	16337149	C	G	16337149	3	3	100	1	0	0	0	0	1	0	0	0	10725	913	32	2	115	2	NRIP1	21	16337149	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09		16337149	31792746	78	6259										
GAL3ST1	0	genome.wustl.edu	37	chr22	30951295	30951295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cgttgaagtggcggtagaggTgggagtccagcatgttccag	17	7	0	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	22	30951295	30951295	T	G	SNP	GAL3ST1	ENST00000338911	human	ensembl	69_37n	-1	known	missense	c.917	p.H306P	0.539	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242	106	1	0.93	35	22	38.6	-	-	-	G	30951295	T	G	30951295	3	3	100	1	0	0	0	0	1	0	0	0	6247	1696	59	5	358	5	GAL3ST1	22	30951295	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09		30951295	20353271	79	6260										
TCF20	0	genome.wustl.edu	37	chr22	42607383	42607383	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aggaatctctcttagggataGacttgatatcctgactgtga	10	7	2	4			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	22	42607383	42607383	G	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.3929	p.S1310C	0.940	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	41	0	0	46	8	14.81	-	-	-	C	42607383	G	C	42607383	3	2	100	1	0	0	0	0	1	0	0	0	15785	942	33	2	1991	2	TCF20	22	42607383	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	11656088	42607383	8697183	80	6261										
TBL1X	0	genome.wustl.edu	37	chrX	9661204	9661204	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ctcagaccaatggaacactcTtggctacgggttcatatgac	9	11	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	9661204	9661204	T	C	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	silent	c.907	p.L303	0.002	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	155	0	0	108	55	33.74	-	-	-	C	9661204	T	C	9661204	2	2	100	1	0	0	0	0	0	0	0	1	15734	1606	56	5		5	TBL1X	23	9661204	Silent	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09		9661204	145609356	81	6262										
MAGED1	0	genome.wustl.edu	37	chrX	51641057	51641057	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	ggagtttcacgtagatcaggGtccagggttcagggtcacat	14	8	4	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	51641057	51641057	G	T	SNP	MAGED1	ENST00000485420	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	MAGED1	HGNC	ENSG00000179222	56	0	0	49	8	14.04	-	-	-	T	51641057	G	T	51641057	1	4	100	0	1	0	0	0	0	0	0	0	9254	1276	44	4		4	MAGED1	23	51641057	RNA	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	41979853	51641057	103629503	82	6263										
HUWE1	0	genome.wustl.edu	37	chrX	53575991	53575991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	agcttggggatggatgtggaCggtggagccaccgcttgcat	17	8	0	0			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	53575991	53575991	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.9964	p.V3322I	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	64	0	0	53	13	19.7	-	-	-	T	53575991	C	T	53575991	3	4	100	1	0	0	0	0	1	0	0	0	7515	536	19	1	3232	1	HUWE1	23	53575991	Missense_Mutation	SNP	C	TCGA-A2-A3XT-01A-11D-A22X-09	1934934	53575991	101694569	83	6264										
DIAPH2	0	genome.wustl.edu	37	chrX	96200577	96200577	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	aagtgaacaaaaagctgcagAgttttcaaagaaggtaagct	10	5	1	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	96200577	96200577	A	G	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.1496	p.E499G	0.993	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	64	0	0	62	14	18.42	-	-	-	G	96200577	A	G	96200577	3	3	100	1	0	0	0	0	1	0	0	0	4555	304	11	5	1550	5	DIAPH2	23	96200577	Missense_Mutation	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	42624586	96200577	59069983	84	6265										
IL1RAPL2	0	genome.wustl.edu	37	chrX	104512185	104512185	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	catgtgaacttaaatatgaaGgaaaacttgtaagacgaaca	8	5	0	3			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	104512185	104512185	G	C	SNP	IL1RAPL2	ENST00000344799	human	ensembl	69_37n	1	known	missense	c.658	p.G220R	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_Interleukin-1_rcpt_II	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108	39	0	0	32	21	39.62	-	-	-	C	104512185	G	C	104512185	3	2	100	1	0	0	0	0	1	0	0	0	7716	1001	35	4	672	4	IL1RAPL2	23	104512185	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	8311608	104512185	50758375	85	6266										
GPR112	0	genome.wustl.edu	37	chrX	135405034	135405034	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	cctgaactcagccgattcacAgcatgcattgatctggtatt	8	11	3	2			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	135405034	135405034	A	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.168	p.T56	0.978	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	71	0	0	60	22	26.83	-	-	-	T	135405034	A	T	135405034	2	4	100	1	0	0	0	0	0	0	0	1	6679	175	7	5		5	GPR112	23	135405034	Silent	SNP	A	TCGA-A2-A3XT-01A-11D-A22X-09	30892849	135405034	19865526	86	6267										
FLNA	0	genome.wustl.edu	37	chrX	153581202	153581202	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tgcctggctctgtggggcagTaggtgaccctgcacgtcccg	15	13	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	153581202	153581202	T	G	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.6317	p.Y2106S	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	74	0	0	66	68	50.75	-	-	-	G	153581202	T	G	153581202	3	3	100	1	0	0	0	0	1	0	0	0	5979	1638	57	5	1666	5	FLNA	23	153581202	Missense_Mutation	SNP	T	TCGA-A2-A3XT-01A-11D-A22X-09	18176168	153581202	1689358	87	6268										
MPP1	0	genome.wustl.edu	37	chrX	154033610	154033610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	14	0.0154483825918983	2.21133933118316	3.15341501564129	0.452798053527981	5.91102298313207e-05	0.00206965530159246	8	tcggagagcgccgtgtgcatGctgcccccactctcgccctc	11	18	1	1			TCGA-A2-A3XT-01A-11D-A22X-09	TCGA-A2-A3XT-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5afb86a-e57a-422a-abdb-6bab20273cc0	47db5812-3372-46bd-a59f-5fac0d3d1a97	X	154033610	154033610	G	T	SNP	MPP1	ENST00000369534	human	ensembl	69_37n	-1	known	missense	c.39	p.S13R	1.000	NULL	pfam_Guanylate_kin,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP1	HGNC	ENSG00000130830	119	0	0	131	56	29.95	-	-	-	T	154033610	G	T	154033610	3	4	100	1	0	0	0	0	1	0	0	0	9805	1310	46	4	1425	4	MPP1	23	154033610	Missense_Mutation	SNP	G	TCGA-A2-A3XT-01A-11D-A22X-09	452408	154033610	1236950	88	6269										
C1orf65	0	genome.wustl.edu	37	chr1	223568468	223568468	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	acatcctgaaactgaaagccGagaaggaggaaaagtgtcac	11	8	1	3			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	1	223568468	223568468	G	T	SNP	C1orf65	ENST00000366875	human	ensembl	69_37n	1	known	nonsense	c.1651	p.E551*	0.996	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	27	0	0	56	12	17.65	-	-	-	T	223568468	G	T	223568468	4	4	101	1	0	0	0	0	0	1	0	0	2075	1059	37	3	1653	3	C1orf65	1	223568468	Nonsense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09		223568468	25682153	1	6270										
PARP1	0	genome.wustl.edu	37	chr1	226549141	226549141	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	ataccagagccaccgggtgtGactcggctacctctcccaat	9	15	1	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	1	226549141	226549141	G	A	SNP	PARP1	ENST00000463968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PARP1	HGNC	ENSG00000143799	37	0	0	25	38	59.38	-	-	-	A	226549141	G	A	226549141	1	1	101	0	1	0	0	0	0	0	0	0	11527	1305	45	2		2	PARP1	1	226549141	RNA	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	2980673	226549141	22701480	2	6271										
OR14I1	0	genome.wustl.edu	37	chr1	248845530	248845530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	aatcagcagaaacagcccggCgtgcagcacctgcagctccc	10	16	1	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	1	248845530	248845530	C	T	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	missense	c.76	p.A26T	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	31	0	0	64	20	23.81	-	-	-	T	248845530	C	T	248845530	3	4	101	1	0	0	0	0	1	0	0	0	11020	768	27	1	863	1	OR14I1	1	248845530	Missense_Mutation	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09	22296389	248845530	405091	3	6272										
AGBL5	0	genome.wustl.edu	37	chr2	27280266	27280266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	tgccagcccccctcccccgcCggctttcccctccagataca	6	23	0	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	2	27280266	27280266	C	T	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	missense	c.1631	p.P544L	0.995	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	59	0	0	45	34	42.5	-	-	-	T	27280266	C	T	27280266	3	4	101	1	0	0	0	0	1	0	0	0	378	652	23	1	1661	1	AGBL5	2	27280266	Missense_Mutation	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09		27280266	215919107	4	6273										
CXCR6	0	genome.wustl.edu	37	chr3	45988437	45988437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	caaggtcaccagcttgctcaTctgggtgatatccctgctgg	11	12	3	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	3	45988437	45988437	T	C	SNP	CXCR6	ENST00000304552	human	ensembl	69_37n	1	known	missense	c.464	p.I155T	0.526	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR6,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR6	HGNC	ENSG00000172215	51	0	0	41	22	34.92	-	-	-	C	45988437	T	C	45988437	3	2	101	1	0	0	0	0	1	0	0	0	4126	1435	50	5	466	5	CXCR6	3	45988437	Missense_Mutation	SNP	T	TCGA-A2-A3XU-01A-12D-A22X-09		45988437	152033993	5	6274										
IK	0	genome.wustl.edu	37	chr5	140027592	140027593	+	Splice_Site	INS	-	-	GT													0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	agcttctgagcttaagccggINSgtgtgtgtgtgtgtgtgtgt							TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	5	140027592	140027593	-	GT	INS	IK	ENST00000523672	human	ensembl	69_37n	1	known	splice_site_ins	c.NULL	NULL	0.000:0.000	-	-	-	no_errors	IK	HGNC	ENSG00000113141	11	0	0	22	8	26.67	-	-	-	GT	140027593	-	GT	140027592	8	5	101	1	0	1	1	0	0	0	1	0	7662	1247	43	0		0	IK	5	140027592	Splice_Site	INS	-	TCGA-A2-A3XU-01A-12D-A22X-09		140027592	40887668	6	6275										
EIF2AK1	0	genome.wustl.edu	37	chr7	6080848	6080848	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	catttttaacaccacattgcTctctgaaaaaaaaaaaaata	2	8	1	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	7	6080848	6080848	T	A	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	missense	c.794	p.E265V	0.468	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	36	0	0	21	12	34.29	-	-	-	A	6080848	T	A	6080848	3	1	101	1	0	0	0	0	1	0	0	0	5031	1551	54	5	1126	5	EIF2AK1	7	6080848	Missense_Mutation	SNP	T	TCGA-A2-A3XU-01A-12D-A22X-09		6080848	153057815	7	6276										
HECW1	0	genome.wustl.edu	37	chr7	43484586	43484586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gggctcagcgaggtggacacGgtggccgctgacccgtctgc	17	13	2	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	7	43484586	43484586	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.1815	p.T605	0.042	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	14	0	0	2	5	71.43	-	-	-	A	43484586	G	A	43484586	2	1	101	1	0	0	0	0	0	0	0	1	7093	1103	39	1		1	HECW1	7	43484586	Silent	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	37403738	43484586	115654077	8	6277										
LINGO2	0	genome.wustl.edu	37	chr9	28295319	28295319	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	taattcccgcatgtcatgggCagcagcatctctcagagtcc	9	13	3	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	9	28295319	28295319	C	T	SNP	LINGO2	ENST00000493941	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.691	-	-	-	no_errors	LINGO2	HGNC	ENSG00000174482	62	0	0	28	18	39.13	-	-	-	T	28295319	C	T	28295319	1	4	101	0	1	0	0	0	0	0	0	0	8871	725	25	4		4	LINGO2	9	28295319	RNA	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09		28295319	112918112	9	6278										
BAAT	0	genome.wustl.edu	37	chr9	104130496	104130496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	ggtcttcatagttatggtaaGccaaggccaaggaggcgaag	14	7	2	0			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	9	104130496	104130496	G	T	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	missense	c.575	p.A192D	0.959	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	56	0	0	38	5	11.63	-	-	-	T	104130496	G	T	104130496	3	4	101	1	0	0	0	0	1	0	0	0	1284	971	34	4	689	4	BAAT	9	104130496	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	75835177	104130496	37082935	10	6279										
TMEM41B	0	genome.wustl.edu	37	chr11	9310063	9310063	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	actgagaaatatagagcctgGaatagcaaatgtttgcaagc	10	6	0	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	11	9310063	9310063	G	T	SNP	TMEM41B	ENST00000299596	human	ensembl	69_37n	-1	known	missense	c.388	p.P130T	1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41B	HGNC	ENSG00000166471	25	0	0	31	4	11.43	-	-	-	T	9310063	G	T	9310063	3	4	101	1	0	0	0	0	1	0	0	0	16260	1174	41	2	503	2	TMEM41B	11	9310063	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09		9310063	125696453	11	6280										
ABCC8	0	genome.wustl.edu	37	chr11	17424297	17424297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gtgtcatccagctgctgcagGtccctgtggcggggaacaga	15	11	1	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	11	17424297	17424297	G	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.3564	p.D1188E	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	72	0	0	45	35	43.75	-	-	-	T	17424297	G	T	17424297	3	4	101	1	0	0	0	0	1	0	0	0	58	1252	44	4	1228	4	ABCC8	11	17424297	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	8114234	17424297	117582219	12	6281										
EI24	0	genome.wustl.edu	37	chr11	125454349	125454349	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	aaacctgaacttttcaactcCgttggtggtgggaggcagcg	13	9	1	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	11	125454349	125454349	C	G	SNP	EI24	ENST00000530985	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	EI24	HGNC	ENSG00000149547	42	0	0	20	9	31.03	-	-	-	G	125454349	C	G	125454349	1	3	101	0	1	0	0	0	0	0	0	0	5020	667	23	3		3	EI24	11	125454349	RNA	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09	108030052	125454349	9552167	13	6282										
GLTP	0	genome.wustl.edu	37	chr12	110290498	110290498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	acattctgccccttggagagCgctttcaggaagtcagactt	10	11	3	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	12	110290498	110290498	C	T	SNP	GLTP	ENST00000540772	human	ensembl	69_37n	-1	putative	missense	c.412	p.A138T	0.072	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLTP	HGNC	ENSG00000139433	52	0	0	56	8	12.5	-	-	-	T	110290498	C	T	110290498	3	4	101	1	0	0	0	0	1	0	0	0	6523	755	27	1	141	1	GLTP	12	110290498	Missense_Mutation	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09		110290498	23561397	14	6283										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256924	69256925	+	Frame_Shift_Ins	INS	-	-	GC													0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	cggcacagctccgtcttgtaINSgcggctggagttgacctggc							TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	14	69256924	69256925	-	GC	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.343_342	p.Y114fs	1.000:1.000	smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	121	0	0	21	45	68.18	-	-	-	GC	69256925	-	GC	69256924	7	5	101	1	0	1	1	0	0	0	0	0	17742	420	15	0	677	0	ZFP36L1	14	69256924	Frame_Shift_Ins	INS	-	TCGA-A2-A3XU-01A-12D-A22X-09		69256924	38092616	15	6284										
ARID3B	0	genome.wustl.edu	37	chr15	74889163	74889163	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	ttttattttaaaatttttatCgtagcaccaaagaaatgaaa	4	4	0	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	15	74889163	74889163	C	T	SNP	ARID3B	ENST00000563567	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ARID3B	HGNC	ENSG00000179361	43	0	0	15	4	21.05	-	-	-	T	74889163	C	T	74889163	1	4	101	0	1	0	0	0	0	0	0	0	919	899	31	1		1	ARID3B	15	74889163	RNA	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09		74889163	27642229	16	6285										
KIAA0430	0	genome.wustl.edu	37	chr16	15696479	15696480	+	Frame_Shift_Del	DEL	GA	GA	-													0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gaagaagaaaggaggaggagGaaggaaagaaggaagaggag							TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	16	15696479	15696480	GA	-	DEL	KIAA0430	ENST00000344181	human	ensembl	69_37n	-1	known	frame_shift_del	c.3340_3339	p.P1114fs	0.000:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	10	0	0	9	5	31.25	-	-	-	-	15696480	GA	-	15696479	7	5	101	1	0	1	0	1	0	0	0	0	8229	1189	41	0		0	KIAA0430	16	15696479	Frame_Shift_Del	DEL	GA	TCGA-A2-A3XU-01A-12D-A22X-09		15696479	74658274	17	6286										
ARHGEF15	0	genome.wustl.edu	37	chr17	8219172	8219172	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gtggggcctttctcggtgtaTgtggattatgtgcggaacca	15	7	1	0			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	17	8219172	8219172	T	C	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	silent	c.1521	p.Y507	0.972	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	58	0	0	27	23	46	-	-	-	C	8219172	T	C	8219172	2	2	101	1	0	0	0	0	0	0	0	1	900	1471	51	5		5	ARHGEF15	17	8219172	Silent	SNP	T	TCGA-A2-A3XU-01A-12D-A22X-09		8219172	72976038	18	6287										
SMCR8	0	genome.wustl.edu	37	chr17	18220650	18220650	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	caggaccatcagcgaggacaGtattgaagtcctcagtacct	10	11	2	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	17	18220650	18220650	G	C	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	missense	c.1547	p.S516T	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	38	0	0	34	14	29.17	-	-	-	C	18220650	G	C	18220650	3	2	101	1	0	0	0	0	1	0	0	0	14881	1029	36	4	1549	4	SMCR8	17	18220650	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	10001478	18220650	62974560	19	6288										
NPLOC4	0	genome.wustl.edu	37	chr17	79534473	79534473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	ataacttcattggtgaccagGaacagcaagaggtggaaatc	11	7	1	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	17	79534473	79534473	G	T	SNP	NPLOC4	ENST00000374747	human	ensembl	69_37n	-1	known	missense	c.1536	p.F512L	0.764	pfam_NPL4,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446	40	0	0	26	15	36.59	-	-	-	T	79534473	G	T	79534473	3	4	101	1	0	0	0	0	1	0	0	0	10659	1165	41	2	302	2	NPLOC4	17	79534473	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	61313823	79534473	1660737	20	6289										
SH2D3A	0	genome.wustl.edu	37	chr19	6755277	6755277	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gcaggggccttcagcaacacCgggtcactgctcgttcgggg	15	13	2	0			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	19	6755277	6755277	C	T	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	silent	c.546	p.P182	0.020	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	82	0	0	39	32	45.07	-	-	-	T	6755277	C	T	6755277	2	4	101	1	0	0	0	0	0	0	0	1	14321	639	23	1		1	SH2D3A	19	6755277	Silent	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09		6755277	52373706	21	6290										
HIC2	0	genome.wustl.edu	37	chr22	21800989	21800989	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	gggcaagttcacccagcagcGcaacctcatcagccacctgc	9	17	3	0			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	22	21800989	21800989	G	C	SNP	HIC2	ENST00000407464	human	ensembl	69_37n	1	known	missense	c.1805	p.R602P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635	88	0	0	61	9	12.86	-	-	-	C	21800989	G	C	21800989	3	2	101	1	0	0	0	0	1	0	0	0	7153	1087	38	3	1811	3	HIC2	22	21800989	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09		21800989	29503577	22	6291										
DMD	0	genome.wustl.edu	37	chrX	31950256	31950256	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	tccaggttcaagtgggatacTagcaatgttatctgcttcct	9	9	2	0			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	X	31950256	31950256	T	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.6703	p.S2235C	0.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	82	0	0	35	29	45.31	-	-	-	A	31950256	T	A	31950256	3	1	101	1	0	0	0	0	1	0	0	0	4616	1522	53	5	4638	5	DMD	23	31950256	Missense_Mutation	SNP	T	TCGA-A2-A3XU-01A-12D-A22X-09		31950256	123320304	23	6292										
TSPAN7	0	genome.wustl.edu	37	chrX	38482195	38482195	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	taagaagctgggtttctcctCatttacataacaagtaatat	6	7	2	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	X	38482195	38482195	C	T	SNP	TSPAN7	ENST00000475216	human	ensembl	69_37n	1	known	missense	c.121	p.H41Y	0.037	NULL	NULL	-	no_errors	TSPAN7	HGNC	ENSG00000156298	34	0	0	34	4	10.53	-	-	-	T	38482195	C	T	38482195	3	4	101	1	0	0	0	0	1	0	0	0	16748	841	29	2		2	TSPAN7	23	38482195	Missense_Mutation	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09	6531939	38482195	116788365	24	6293										
CASK	0	genome.wustl.edu	37	chrX	41416285	41416285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	tgtggagctaaagttcttacCgaaacagaattgttagtgct	10	6	1	1			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	X	41416285	41416285	C	T	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	silent	c.1806	p.S602	1.000	superfamily_SH3_domain	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	60	0	0	37	32	46.38	-	-	-	T	41416285	C	T	41416285	2	4	101	1	0	0	0	0	0	0	0	1	2690	666	23	1		1	CASK	23	41416285	Silent	SNP	C	TCGA-A2-A3XU-01A-12D-A22X-09	2934090	41416285	113854275	25	6294										
UBE2A	0	genome.wustl.edu	37	chrX	118717178	118717178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.842220722787211	1.21794871794872	0	1.58333333333333	0.333333333333333	0.930327025915261	0	caaacgggaatatgaaaagcGtgtttctgcaatagtagaac	10	6	1	2			TCGA-A2-A3XU-01A-12D-A22X-09	TCGA-A2-A3XU-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	468cd8a6-60b1-465a-b44f-1e3515166a34	b9a3f99c-a15f-4552-aa83-d22cbbd3c921	X	118717178	118717178	G	T	SNP	UBE2A	ENST00000371558	human	ensembl	69_37n	1	known	missense	c.419	p.R140L	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2A	HGNC	ENSG00000077721	67	0	0	30	35	53.85	-	-	-	T	118717178	G	T	118717178	3	4	101	1	0	0	0	0	1	0	0	0	16941	1145	40	3	441	3	UBE2A	23	118717178	Missense_Mutation	SNP	G	TCGA-A2-A3XU-01A-12D-A22X-09	77300893	118717178	36553382	26	6295										
CLSTN1	0	genome.wustl.edu	37	chr1	9801173	9801173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgccagcaagcccccaccaCgagctgagtttctatcttgg	9	14	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	9801173	9801173	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	69_37n	-1	known	missense	c.1498	p.V500M	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603	66	0	0	41	30	42.25	-	-	-	T	9801173	C	T	9801173	3	4	102	1	0	0	0	0	1	0	0	0	3591	536	19	1	1487	1	CLSTN1	1	9801173	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09		9801173	239449448	1	6296										
CLCNKA	0	genome.wustl.edu	37	chr1	16350315	16350315	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggcctggagtggctaaagCagaaggtgttccgcctggga	17	8	0	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	16350315	16350315	C	T	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	nonsense	c.121	p.Q41*	0.936	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	119	0	0	129	24	15.69	-	-	-	T	16350315	C	T	16350315	4	4	102	1	0	0	0	0	0	1	0	0	3499	711	25	4	127	4	CLCNKA	1	16350315	Nonsense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	6549142	16350315	232900306	2	6297										
LRRC41	0	genome.wustl.edu	37	chr1	46751042	46751042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cagggtgctcaccattgtagGagagtgtgaggctctccagt	14	9	2	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	46751042	46751042	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1487	p.S496F	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	58	0	0	38	20	34.48	-	-	-	A	46751042	G	A	46751042	3	1	102	1	0	0	0	0	1	0	0	0	9065	1174	41	2	979	2	LRRC41	1	46751042	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	30400727	46751042	202499579	3	6298										
VAV3	0	genome.wustl.edu	37	chr1	108226109	108226109	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaggtttaatcagaaacacaCctggatccacctgtttagga	8	9	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	108226109	108226109	C	A	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	splice_site	c.1777+1	e19+1	1.000	-	-	-	no_errors	VAV3	HGNC	ENSG00000134215	43	0	0	47	21	30.88	-	-	-	A	108226109	C	A	108226109	5	1	102	1	0	0	0	0	0	0	1	0	17230	521	18	4	801	4	VAV3	1	108226109	Splice_Site	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	61475067	108226109	141024512	4	6299										
ZNF648	0	genome.wustl.edu	37	chr1	182026518	182026518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggggtggccgacgcctgggCtggtgtatgtgtctcttgcg	18	9	1	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	182026518	182026518	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.628	p.A210T	0.222	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	85	0	0	52	39	42.86	-	-	-	T	182026518	C	T	182026518	3	4	102	1	0	0	0	0	1	0	0	0	18159	797	28	4	1082	4	ZNF648	1	182026518	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	73800409	182026518	67224103	5	6300										
PRG4	0	genome.wustl.edu	37	chr1	186277898	186277898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagagctactaattctaaagCgacaactcctaaacctcaaa	4	12	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	186277898	186277898	C	T	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	missense	c.3047	p.A1016V	0.004	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	26	0	0	21	10	32.26	-	-	-	T	186277898	C	T	186277898	3	4	102	1	0	0	0	0	1	0	0	0	12562	768	27	1	3069	1	PRG4	1	186277898	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	4251380	186277898	62972723	6	6301										
PREPL	0	genome.wustl.edu	37	chr2	44553850	44553850	+	Splice_Site	DEL	C	C	-													0	0	1	0	0	0	1	1	0	gtagagacagagcgtactcaCctccaaagtcaccgctctca							TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	44553850	44553850	C	-	DEL	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	splice_site_del	c.1746+1	e10+1	1.000	-	-	-	no_errors	PREPL	HGNC	ENSG00000138078	42	0	0	50	29	35.8	-	-	-	-	44553850	C	-	44553850	8	5	102	1	0	1	0	1	0	0	1	0	12556	521	18	0	456	0	PREPL	2	44553850	Splice_Site	DEL	C	TCGA-A2-A3XV-01A-21D-A23C-09		44553850	198645523	7	6302										
CCT7	0	genome.wustl.edu	37	chr2	73476273	73476273	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ggacatgttctgtgctggccGagtacctgaggaggatctga	15	8	2	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	73476273	73476273	G	C	SNP	CCT7	ENST00000258091	human	ensembl	69_37n	1	known	missense	c.938	p.R313P	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624	73	0	0	60	33	35.48	-	-	-	C	73476273	G	C	73476273	3	2	102	1	0	0	0	0	1	0	0	0	2988	1058	37	3	968	3	CCT7	2	73476273	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	28922423	73476273	169723100	8	6303										
ALMS1	0	genome.wustl.edu	37	chr2	73717262	73717262	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcaccgacattctaaatgcAtttccaattcctctgttgtt	4	12	3	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	73717262	73717262	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.8173	p.I2725V	0.992	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	67	0	0	40	22	35.48	-	-	-	G	73717262	A	G	73717262	3	3	102	1	0	0	0	0	1	0	0	0	535	217	8	5	8211	5	ALMS1	2	73717262	Missense_Mutation	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09	240989	73717262	169482111	9	6304										
NEU4	0	genome.wustl.edu	37	chr2	242758079	242758079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcccacccagtggggcgcaGggctcggctacacatgggta	14	14	0	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	242758079	242758079	G	A	SNP	NEU4	ENST00000325935	human	ensembl	69_37n	1	known	missense	c.1199	p.R400K	0.873	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU4	HGNC	ENSG00000204099	64	0	0	59	24	28.92	-	-	-	A	242758079	G	A	242758079	3	1	102	1	0	0	0	0	1	0	0	0	10416	1000	35	4	1213	4	NEU4	2	242758079	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	169040817	242758079	441294	10	6305										
MUC4	0	genome.wustl.edu	37	chr3	195507242	195507242	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtgacgtgacctgtggatgCtgaggaagggctggtgacat	18	6	0	4			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	3	195507242	195507242	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11209	p.A3737S	0.018	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	76	0	0	78	9	10.34	-	-	-	A	195507242	C	A	195507242	3	1	102	1	0	0	0	0	1	0	0	0	10050	797	28	4		4	MUC4	3	195507242	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09		195507242	2515188	11	6306										
SRP72	0	genome.wustl.edu	37	chr4	57355634	57355634	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcacacaagctatccagtgGtatcaaaaccatcaggtaaa	6	10	3	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	4	57355634	57355634	G	T	SNP	SRP72	ENST00000342756	human	ensembl	69_37n	1	known	missense	c.1305	p.W435C	1.000	smart_TPR_repeat	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780	39	0	0	18	6	25	-	-	-	T	57355634	G	T	57355634	3	4	102	1	0	0	0	0	1	0	0	0	15248	1270	44	4	1355	4	SRP72	4	57355634	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		57355634	133798642	12	6307										
CFB	0	genome.wustl.edu	37	chr6	31916210	31916210	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acatatgccacataccccaaAatttgggtcaaagtgtctga	7	10	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	31916210	31916210	A	T	SNP	CFB	ENST00000556679	human	ensembl	69_37n	1	known	missense	c.2463	p.K821N	0.002	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Peptidase_S1_S6,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649	89	0	0	110	30	21.43	-	-	-	T	31916210	A	T	31916210	3	4	102	1	0	0	0	0	1	0	0	0	3307	11	1	5	983	5	CFB	6	31916210	Missense_Mutation	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09		31916210	139198857	13	6308										
DST	0	genome.wustl.edu	37	chr6	56473029	56473029	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttaaaattgatgctgtgtTgttgtctataattcctagct	7	5	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	56473029	56473029	T	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.6298	p.N2100Y	0.034	superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	27	0	0	46	9	16.36	-	-	-	A	56473029	T	A	56473029	3	1	102	1	0	0	0	0	1	0	0	0	4818	1827	63	5		5	DST	6	56473029	Missense_Mutation	SNP	T	TCGA-A2-A3XV-01A-21D-A23C-09	24556819	56473029	114642038	14	6309										
SOBP	0	genome.wustl.edu	37	chr6	107854723	107854723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagaaagtgggaatcaagcGctattccctgagtatgggaa	12	8	1	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	107854723	107854723	G	A	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	1	known	missense	c.482	p.R161H	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	62	0	0	40	15	27.27	-	-	-	A	107854723	G	A	107854723	3	1	102	1	0	0	0	0	1	0	0	0	15001	1087	38	1	496	1	SOBP	6	107854723	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	51381694	107854723	63260344	15	6310										
PDE10A	0	genome.wustl.edu	37	chr6	165848788	165848788	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acataagcagagacggtggtGccctgagtgatgggcccagc	15	10	0	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	165848788	165848788	G	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	silent	c.474	p.G158	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	50	0	0	34	4	10.53	-	-	-	T	165848788	G	T	165848788	2	4	102	1	0	0	0	0	0	0	0	1	11703	1306	46	4		4	PDE10A	6	165848788	Silent	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	57994065	165848788	5266279	16	6311										
MLLT4	0	genome.wustl.edu	37	chr6	168344142	168344143	+	Frame_Shift_Del	DEL	CT	CT	-													0	0	1	0	0	0	1	1	0	atggacgaagtctggttggaCtctctcaggaaaggtatcat							TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	168344142	168344143	CT	-	DEL	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	frame_shift_del	c.3205_3206	p.Q1071fs	0.999:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	49	0	0	44	27	36.99	-	-	-	-	168344143	CT	-	168344142	7	5	102	1	0	1	0	1	0	0	0	0	9700	565	20	0	3299	0	MLLT4	6	168344142	Frame_Shift_Del	DEL	CT	TCGA-A2-A3XV-01A-21D-A23C-09	2495354	168344142	2770925	17	6312										
PDE1C	0	genome.wustl.edu	37	chr7	32209536	32209536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctgtgagcccatcgatgaGggagttccacagacagttct	11	12	1	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	7	32209536	32209536	G	C	SNP	PDE1C	ENST00000396193	human	ensembl	69_37n	-1	novel	missense	c.169	p.L57V	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	73	0	0	70	27	27.84	-	-	-	C	32209536	G	C	32209536	3	2	102	1	0	0	0	0	1	0	0	0	11708	1015	35	4		4	PDE1C	7	32209536	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		32209536	126929127	18	6313										
AOAH	0	genome.wustl.edu	37	chr7	36554094	36554095	+	Frame_Shift_Del	DEL	CG	CG	-													0	0	1	0	0	0	1	1	0	ttactctctggttctgctgtCgcatgtcaggtttcccttta							TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	7	36554094	36554095	CG	-	DEL	AOAH	ENST00000431169	human	ensembl	69_37n	-1	putative	frame_shift_del	c.1702_1701	p.C567fs	0.000:0.000	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	134	0	0	119	50	29.07	-	-	-	-	36554095	CG	-	36554094	7	5	102	1	0	1	0	1	0	0	0	0	727	884	31	0	370	0	AOAH	7	36554094	Frame_Shift_Del	DEL	CG	TCGA-A2-A3XV-01A-21D-A23C-09	4344558	36554094	122584569	19	6314										
NEFM	0	genome.wustl.edu	37	chr8	24772014	24772014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggtggccttcctgcggagCaaccacgaggaggaggtggc	18	10	0	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	8	24772014	24772014	C	T	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	silent	c.708	p.S236	1.000	pfam_F	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	47	0	0	41	16	28.07	-	-	-	T	24772014	C	T	24772014	2	4	102	1	0	0	0	0	0	0	0	1	10388	709	25	4		4	NEFM	8	24772014	Silent	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09		24772014	121592008	20	6315										
ADCK5	0	genome.wustl.edu	37	chr8	145616200	145616200	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accacctgcttccccccgagTatacccggaccctgcgcgtg	9	19	0	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	8	145616200	145616200	T	C	SNP	ADCK5	ENST00000308860	human	ensembl	69_37n	1	known	missense	c.487	p.Y163H	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK5	HGNC	ENSG00000173137	57	0	0	44	20	31.25	-	-	-	C	145616200	T	C	145616200	3	2	102	1	0	0	0	0	1	0	0	0	291	1638	57	5	505	5	ADCK5	8	145616200	Missense_Mutation	SNP	T	TCGA-A2-A3XV-01A-21D-A23C-09	120844186	145616200	747822	21	6316										
IFNA10	0	genome.wustl.edu	37	chr9	21206881	21206881	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	acagagatggcttgagccttCtggaactggttgccatcaaa							TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	21206881	21206881	C	-	DEL	IFNA10	ENST00000357374	human	ensembl	69_37n	-1	known	frame_shift_del	c.216	p.K73fs	0.624	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803	146	0	0	48	48	47.52	-	-	-	-	21206881	C	-	21206881	7	5	102	1	0	1	0	1	0	0	0	0	7586	912	32	0	357	0	IFNA10	9	21206881	Frame_Shift_Del	DEL	C	TCGA-A2-A3XV-01A-21D-A23C-09		21206881	120006550	22	6317										
PTCH1	0	genome.wustl.edu	37	chr9	98218572	98218572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccataccaaagcaacgtgaaCggtgaactccactcctatgc	7	14	0	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	98218572	98218572	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3292	p.V1098I	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	40	0	0	50	10	16.67	-	-	-	T	98218572	C	T	98218572	3	4	102	1	0	0	0	0	1	0	0	0	12810	536	19	1	1071	1	PTCH1	9	98218572	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	77011691	98218572	42994859	23	6318										
ORM1	0	genome.wustl.edu	37	chr9	117085526	117085526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccaacgccaccctggaccGggtgagtgcctgggctagcc	13	16	0	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	117085526	117085526	G	A	SNP	ORM1	ENST00000259396	human	ensembl	69_37n	1	known	missense	c.113	p.R38Q	0.001	superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM1	HGNC	ENSG00000229314	54	0	0	72	8	10	-	-	-	A	117085526	G	A	117085526	3	1	102	1	0	0	0	0	1	0	0	0	11340	1130	39	1	115	1	ORM1	9	117085526	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	18866954	117085526	24127905	24	6319										
COL5A1	0	genome.wustl.edu	37	chr9	137710523	137710523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagaagccggcttggaaggcCctcctgggaagactggcccc	15	13	0	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	137710523	137710523	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.4252	p.P1418S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	73	0	0	72	13	15.29	-	-	-	T	137710523	C	T	137710523	3	4	102	1	0	0	0	0	1	0	0	0	3726	623	22	4	4470	4	COL5A1	9	137710523	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	20624997	137710523	3502908	25	6320										
PBLD	0	genome.wustl.edu	37	chr10	70055968	70055968	+	RNA	DEL	A	A	-													0	0	1	0	0	0	1	1	0	aaaagtgtgtgtgagaacttAaaaaaaaaaaagccatttgc							TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	10	70055968	70055968	A	-	DEL	PBLD	ENST00000478192	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PBLD	HGNC	ENSG00000108187	14	0	0	12	3	20	-	-	-	-	70055968	A	-	70055968	6	5	102	0	1	1	0	1	0	0	0	0	11562	377	13	0		0	PBLD	10	70055968	RNA	DEL	A	TCGA-A2-A3XV-01A-21D-A23C-09		70055968	65478779	26	6321										
EMX2	0	genome.wustl.edu	37	chr10	119307895	119307895	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agggagcagcggaatgcggcGaagactctggacagcgaggg	19	8	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	10	119307895	119307895	G	A	SNP	EMX2	ENST00000442245	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.274	-	-	-	no_errors	EMX2	HGNC	ENSG00000170370	45	0	0	34	11	24.44	-	-	-	A	119307895	G	A	119307895	1	1	102	0	1	0	0	0	0	0	0	0	5145	1073	37	1		1	EMX2	10	119307895	RNA	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	49251927	119307895	16226852	27	6322										
SCYL1	0	genome.wustl.edu	37	chr11	65294577	65294577	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagaaaccaacctcttcctgGaggagattcaggtgagcccc	10	12	2	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	11	65294577	65294577	G	T	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	nonsense	c.838	p.E280*	1.000	superfamily_ARM-type_fold,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	34	0	0	35	4	10.26	-	-	-	T	65294577	G	T	65294577	4	4	102	1	0	0	0	0	0	1	0	0	14035	1175	41	2	860	2	SCYL1	11	65294577	Nonsense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		65294577	69711939	28	6323										
SLCO2B1	0	genome.wustl.edu	37	chr11	74880301	74880301	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccccctccaatggcaactgcTcaagctacacagaaacccag	6	17	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	11	74880301	74880301	T	A	SNP	SLCO2B1	ENST00000289575	human	ensembl	69_37n	1	known	missense	c.532	p.S178T	0.015	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491	56	0	0	59	20	25.32	-	-	-	A	74880301	T	A	74880301	3	1	102	1	0	0	0	0	1	0	0	0	14816	1551	54	5	550	5	SLCO2B1	11	74880301	Missense_Mutation	SNP	T	TCGA-A2-A3XV-01A-21D-A23C-09	9585724	74880301	60126215	29	6324										
VWF	0	genome.wustl.edu	37	chr12	6128145	6128145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgaaacccccaagagccccGggcccacagtgacttgtgcc	10	17	0	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	6128145	6128145	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.4439	p.P1480L	0.432	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	64	0	0	50	37	42.05	-	-	-	A	6128145	G	A	6128145	3	1	102	1	0	0	0	0	1	0	0	0	17343	1116	39	1	4102	1	VWF	12	6128145	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		6128145	127723750	30	6325										
PDE3A	0	genome.wustl.edu	37	chr12	20766424	20766424	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcgccgtcatgggcgaggcCcacggcctcattaccgacct	11	16	2	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	20766424	20766424	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.1059	p.A353	0.034	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	52	0	0	58	18	23.68	-	-	-	T	20766424	C	T	20766424	2	4	102	1	0	0	0	0	0	0	0	1	11710	610	22	4		4	PDE3A	12	20766424	Silent	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	14638279	20766424	113085471	31	6326										
ERBB3	0	genome.wustl.edu	37	chr12	56481922	56481922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaccaagtatcagtatggaGgagtttgtgtagccagctgt	12	7	1	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	56481922	56481922	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.850	p.G284R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	29	0	0	20	21	51.22	-	-	-	A	56481922	G	A	56481922	3	1	102	1	0	0	0	0	1	0	0	0	5245	1001	35	4	1007	4	ERBB3	12	56481922	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	35715498	56481922	77369973	32	6327										
MRPL42	0	genome.wustl.edu	37	chr12	93894779	93894779	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gattaggtaaagaaaagaaaAcaaattttcacaatgggaga	9	3	1	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	93894779	93894779	A	T	SNP	MRPL42	ENST00000552938	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.045	-	-	-	no_errors	MRPL42	HGNC	ENSG00000198015	16	0	0	26	6	18.75	-	-	-	T	93894779	A	T	93894779	1	4	102	0	1	0	0	0	0	0	0	0	9878	58	2	5		5	MRPL42	12	93894779	RNA	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09	37412857	93894779	39957116	33	6328										
MCF2L	0	genome.wustl.edu	37	chr13	113750783	113750783	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggagctggtgcaggagggCgacgagggcctctggtaaga	20	7	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	13	113750783	113750783	C	T	SNP	MCF2L	ENST00000397017	human	ensembl	69_37n	1	novel	nonsense	c.2230	p.R744*	0.034	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MCF2L	HGNC	ENSG00000126217	64	0	0	47	28	37.33	-	-	-	T	113750783	C	T	113750783	4	4	102	1	0	0	0	0	0	1	0	0	9450	755	27	1	3550	1	MCF2L	13	113750783	Nonsense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09		113750783	1419095	34	6329										
GPR137C	0	genome.wustl.edu	37	chr14	53098909	53098909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgccagactgtcgtcgtggGctctgtagtcattcttctgt	12	10	4	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	14	53098909	53098909	G	A	SNP	GPR137C	ENST00000321662	human	ensembl	69_37n	1	known	missense	c.749	p.G250D	1.000	NULL	NULL	-	no_errors	GPR137C	HGNC	ENSG00000180998	61	0	0	63	22	25.88	-	-	-	A	53098909	G	A	53098909	3	1	102	1	0	0	0	0	1	0	0	0	6697	1203	42	4	763	4	GPR137C	14	53098909	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		53098909	54250631	35	6330										
ACTN1	0	genome.wustl.edu	37	chr14	69349628	69349628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatctcctgaggcgtgatggTtgtgtaggggttggtgcccg	18	7	1	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	14	69349628	69349628	T	C	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	missense	c.1780	p.T594A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	137	0	0	116	39	25.16	-	-	-	C	69349628	T	C	69349628	3	2	102	1	0	0	0	0	1	0	0	0	204	1725	60	5	996	5	ACTN1	14	69349628	Missense_Mutation	SNP	T	TCGA-A2-A3XV-01A-21D-A23C-09	16250719	69349628	37999912	36	6331										
FBRS	0	genome.wustl.edu	37	chr16	30678913	30678913	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggcagctcccggggcccacGgacccttcctgagccccagc	12	20	0	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	30678913	30678913	G	T	SNP	FBRS	ENST00000356166	human	ensembl	69_37n	1	known	nonsense	c.2044	p.G682*	1.000	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860	74	0	0	65	23	26.14	-	-	-	T	30678913	G	T	30678913	4	4	102	1	0	0	0	0	0	1	0	0	5753	1117	39	3	514	3	FBRS	16	30678913	Nonsense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		30678913	59675840	37	6332										
LDHD	0	genome.wustl.edu	37	chr16	75146546	75146546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaccctgcccagttcctcggCgtcatcagggttgaccagca	11	15	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	75146546	75146546	C	A	SNP	LDHD	ENST00000300051	human	ensembl	69_37n	-1	known	missense	c.1312	p.A438S	0.000	pfam_FAD-linked_oxidase_C,superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-linked_Oxase-like_C,superfamily_FAD-bd_2	-	no_errors	LDHD	HGNC	ENSG00000166816	53	0	0	60	22	26.83	-	-	-	A	75146546	C	A	75146546	3	1	102	1	0	0	0	0	1	0	0	0	8757	768	27	3	219	3	LDHD	16	75146546	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	44467633	75146546	15208207	38	6333										
MAF	0	genome.wustl.edu	37	chr16	79632803	79632803	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgcaccagcctggagatctCctgcttgaggtggtcgactt	13	12	1	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	79632803	79632803	C	A	SNP	MAF	ENST00000326043	human	ensembl	69_37n	-1	known	nonsense	c.997	p.E333*	1.000	pfam_bZIP_Maf,smart_bZIP,pfscan_bZIP	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573	56	0	0	52	31	37.35	-	-	-	A	79632803	C	A	79632803	4	1	102	1	0	0	0	0	0	1	0	0	9222	864	30	2	226	2	MAF	16	79632803	Nonsense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	4486257	79632803	10721950	39	6334										
TP53	0	genome.wustl.edu	37	chr17	7578526	7578526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcaggtcttggccagttggCaaaacatcttgttgagggca	14	8	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	7578526	7578526	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.404	p.C135F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	54	0	0	18	20	52.63	-	-	-	A	7578526	C	A	7578526	3	1	102	1	0	0	0	0	1	0	0	0	16477	710	25	4	894	4	TP53	17	7578526	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09		7578526	73616684	40	6335										
ERBB2	0	genome.wustl.edu	37	chr17	37868208	37868208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cctttctacggacgtgggatCctgcaccctcgtctgccccc	9	18	2	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	37868208	37868208	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.929	p.S310F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	88	0	0	74	148	66.67	-	-	-	T	37868208	C	T	37868208	3	4	102	1	0	0	0	0	1	0	0	0	5243	855	30	2	959	2	ERBB2	17	37868208	Missense_Mutation	SNP	C	TCGA-A2-A3XV-01A-21D-A23C-09	30289682	37868208	43327002	41	6336										
OR4D2	0	genome.wustl.edu	37	chr17	56247845	56247845	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtgtccatcggccacacaGtcatgacccccatgctcaac	7	16	2	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	56247845	56247845	G	T	SNP	OR4D2	ENST00000545221	human	ensembl	69_37n	1	known	missense	c.829	p.V277F	0.689	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713	90	0	0	101	28	21.71	-	-	-	T	56247845	G	T	56247845	3	4	102	1	0	0	0	0	1	0	0	0	11129	1029	36	4	831	4	OR4D2	17	56247845	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	18379637	56247845	24947365	42	6337										
CABYR	0	genome.wustl.edu	37	chr18	21739776	21739776	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgagatatgttgcaatgcaAgtgcccattgctgttcctgc	10	9	0	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	18	21739776	21739776	A	C	SNP	CABYR	ENST00000399496	human	ensembl	69_37n	1	known	missense	c.882	p.Q294H	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	98	0	0	63	27	30	-	-	-	C	21739776	A	C	21739776	3	2	102	1	0	0	0	0	1	0	0	0	2561	69	3	5	1837	5	CABYR	18	21739776	Missense_Mutation	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09		21739776	56337472	43	6338										
ZNF555	0	genome.wustl.edu	37	chr19	2853678	2853678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagagaagccctatgaatgtAaggaatgtgggaaggtcttc	13	5	1	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	2853678	2853678	A	G	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	1	known	missense	c.1615	p.K539E	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	42	0	0	41	19	31.67	-	-	-	G	2853678	A	G	2853678	3	3	102	1	0	0	0	0	1	0	0	0	18082	363	13	5	1629	5	ZNF555	19	2853678	Missense_Mutation	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09		2853678	56275305	44	6339										
SMARCA4	0	genome.wustl.edu	37	chr19	11152150	11152150	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaagaagcgcgggcggccGcctgccgagaaactctcccc	13	16	1	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	11152150	11152150	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	silent	c.4434	p.P1478	0.037	superfamily_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	105	0	0	111	28	20.14	-	-	-	A	11152150	G	A	11152150	2	1	102	1	0	0	0	0	0	0	0	1	14859	1074	38	1		1	SMARCA4	19	11152150	Silent	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	8298472	11152150	47976833	45	6340										
EPS15L1	0	genome.wustl.edu	37	chr19	16528437	16528437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aactccccggagccgagagaGcctgaactgtcctagaattg	11	12	0	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	16528437	16528437	G	A	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.1119	p.G373	0.151	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	53	0	0	41	20	32.79	-	-	-	A	16528437	G	A	16528437	2	1	102	1	0	0	0	0	0	0	0	1	5230	958	34	4		4	EPS15L1	19	16528437	Silent	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	5376287	16528437	42600546	46	6341										
SLC35E1	0	genome.wustl.edu	37	chr19	16678946	16678946	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggtgacggtggccagcaggAcaccgctgatgatggggatg	18	9	0	3			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	16678946	16678946	A	C	SNP	SLC35E1	ENST00000409648	human	ensembl	69_37n	-1	known	missense	c.527	p.V176G	1.000	pfam_DMT,pfam_UAA	pfam_DUF250,pfam_DMT,pfam_UAA	-	no_errors	SLC35E1	HGNC	ENSG00000127526	34	0	0	37	23	38.33	-	-	-	C	16678946	A	C	16678946	3	2	102	1	0	0	0	0	1	0	0	0	14673	275	10	5	721	5	SLC35E1	19	16678946	Missense_Mutation	SNP	A	TCGA-A2-A3XV-01A-21D-A23C-09	150509	16678946	42450037	47	6342										
KRTAP15-1	0	genome.wustl.edu	37	chr21	31812899	31812899	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagaattccatcttctgcaGtccccgccagactaactaca	5	14	2	2			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	21	31812899	31812899	G	T	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	1	known	missense	c.254	p.S85I	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	71	0	0	55	20	26.67	-	-	-	T	31812899	G	T	31812899	3	4	102	1	0	0	0	0	1	0	0	0	8579	1029	36	4	256	4	KRTAP15-1	21	31812899	Missense_Mutation	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		31812899	16316996	48	6343										
DGCR6	0	genome.wustl.edu	37	chr22	18899484	18899484	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	acctgcactggggcccactcGagcgcttgttctggtctcag	12	14	2	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	22	18899484	18899484	G	A	SNP	DGCR6	ENST00000436645	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGCR6	HGNC	ENSG00000183628	8	0	0	7	6	46.15	-	-	-	A	18899484	G	A	18899484	1	1	102	0	1	0	0	0	0	0	0	0	4498	1073	37	1		1	DGCR6	22	18899484	RNA	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09		18899484	32405082	49	6344										
SLC38A5	0	genome.wustl.edu	37	chrX	48317085	48317085	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctcctcctcctcctcttcTtcctcctcctcctcctccca	0	25	2	0			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	X	48317085	48317085	T	C	SNP	SLC38A5	ENST00000462359	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC38A5	HGNC	ENSG00000017483	40	0	0	48	6	11.11	-	-	-	C	48317085	T	C	48317085	1	2	102	0	1	0	0	0	0	0	0	0	14696	1624	56	5		5	SLC38A5	23	48317085	RNA	SNP	T	TCGA-A2-A3XV-01A-21D-A23C-09		48317085	106953475	50	6345										
STAG2	0	genome.wustl.edu	37	chrX	123200024	123200024	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttttttttttttttttacaGtgcccatgacctttcaaagt	4	7	1	1			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	X	123200024	123200024	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	splice_site	c.2097-1	e20-1	1.000	-	-	-	no_errors	STAG2	HGNC	ENSG00000101972	25	0	0	28	10	26.32	-	-	-	A	123200024	G	A	123200024	5	1	102	1	0	0	0	0	0	0	1	0	15334	1043	36	4	2174	4	STAG2	23	123200024	Splice_Site	SNP	G	TCGA-A2-A3XV-01A-21D-A23C-09	74882939	123200024	32070536	51	6346										
PDE4DIP	0	genome.wustl.edu	37	chr1	145039866	145039866	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcagtaggaggctggactcAgagcggcgcggcgcccgggg	19	12	2	1			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	1	145039866	145039866	A	G	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	10	0	0	10	7	41.18	-	-	-	G	145039866	A	G	145039866	1	3	103	0	1	0	0	0	0	0	0	0	11716	203	7	5		5	PDE4DIP	1	145039866	RNA	SNP	A	TCGA-A2-A3XW-01A-11D-A23C-09		145039866	104210755	1	6347										
BTN3A1	0	genome.wustl.edu	37	chr6	26406396	26406396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctgctctccgaatacacaaCgtcacagcctctgacagtgg	9	14	3	1			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	6	26406396	26406396	C	T	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	silent	c.345	p.N115	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	14	0	0	21	7	25	-	-	-	T	26406396	C	T	26406396	2	4	103	1	0	0	0	0	0	0	0	1	1571	535	19	1		1	BTN3A1	6	26406396	Silent	SNP	C	TCGA-A2-A3XW-01A-11D-A23C-09		26406396	144708671	2	6348										
ZFHX4	0	genome.wustl.edu	37	chr8	77618657	77618657	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tgtgattatgaaaccaatgtCgccaggaacctccgaattca	8	10	1	2			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	8	77618657	77618657	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.2334	p.V778	0.657	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	31	0	0	35	5	12.5	-	-	-	T	77618657	C	T	77618657	2	4	103	1	0	0	0	0	0	0	0	1	17731	871	31	1		1	ZFHX4	8	77618657	Silent	SNP	C	TCGA-A2-A3XW-01A-11D-A23C-09		77618657	68745365	3	6349										
CCNJ	0	genome.wustl.edu	37	chr10	97818297	97818297	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acagaaaatttggacagactTcaatttgccattttgagatt	7	6	1	3			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	10	97818297	97818297	T	C	SNP	CCNJ	ENST00000471424	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCNJ	HGNC	ENSG00000107443	45	0	0	46	7	13.21	-	-	-	C	97818297	T	C	97818297	1	2	103	0	1	0	0	0	0	0	0	0	2957	1798	62	5		5	CCNJ	10	97818297	RNA	SNP	T	TCGA-A2-A3XW-01A-11D-A23C-09		97818297	37716450	4	6350										
CRTAC1	0	genome.wustl.edu	37	chr10	99640046	99640046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcgttgggctcgtagccccgActgcacttcttgttggtccg	12	13	1	0			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	10	99640046	99640046	A	G	SNP	CRTAC1	ENST00000298819	human	ensembl	69_37n	-1	known	missense	c.1736	p.V579A	0.998	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC	-	no_errors	CRTAC1	HGNC	ENSG00000095713	77	0	0	82	12	12.77	-	-	-	G	99640046	A	G	99640046	3	3	103	1	0	0	0	0	1	0	0	0	3926	272	10	5	214	5	CRTAC1	10	99640046	Missense_Mutation	SNP	A	TCGA-A2-A3XW-01A-11D-A23C-09	1821749	99640046	35894701	5	6351										
PHKB	0	genome.wustl.edu	37	chr16	47703133	47703133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgccacttgtaggtaactcTgggtgcctttgggcatgaag	13	9	1	1			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	16	47703133	47703133	T	C	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	1	known	missense	c.2435	p.L812P	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	41	0	0	24	3	10.71	-	-	-	C	47703133	T	C	47703133	3	2	103	1	0	0	0	0	1	0	0	0	11919	1580	55	5	2691	5	PHKB	16	47703133	Missense_Mutation	SNP	T	TCGA-A2-A3XW-01A-11D-A23C-09		47703133	42651620	6	6352										
LAMA1	0	genome.wustl.edu	37	chr18	6942135	6942135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgtgcagttcgaacgctctGctgaagtcaaaggactgcac	11	12	2	1			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	18	6942135	6942135	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.9171	p.S3057R	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	31	0	0	30	4	11.43	-	-	-	T	6942135	G	T	6942135	3	4	103	1	0	0	0	0	1	0	0	0	8659	1310	46	4	60	4	LAMA1	18	6942135	Missense_Mutation	SNP	G	TCGA-A2-A3XW-01A-11D-A23C-09		6942135	71135113	7	6353										
PLCB4	0	genome.wustl.edu	37	chr20	9460030	9460030	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acaaaaacaaaaaacagtgcAttagcaatttcatagcaagt	5	7	1	0			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	20	9460030	9460030	A	G	SNP	PLCB4	ENST00000464199	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLCB4	HGNC	ENSG00000101333	24	0	0	33	4	10.81	-	-	-	G	9460030	A	G	9460030	1	3	103	0	1	0	0	0	0	0	0	0	12104	232	8	5		5	PLCB4	20	9460030	RNA	SNP	A	TCGA-A2-A3XW-01A-11D-A23C-09		9460030	53565490	8	6354										
ENAH	0	genome.wustl.edu	37	chr1	225707103	225707103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gccgctccaggcgttcctgcCgttcccgttcttgtctctct	9	17	3	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	1	225707103	225707103	C	G	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.599	p.R200P	0.457	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	179	0	0	269	32	10.63	-	-	-	G	225707103	C	G	225707103	3	3	104	1	0	0	0	0	1	0	0	0	5148	652	23	3	1220	3	ENAH	1	225707103	Missense_Mutation	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09		225707103	23543518	1	6355										
GEN1	0	genome.wustl.edu	37	chr2	17941357	17941357	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	aaaatgatgggcagcgtcatGaagccccacctcaggtatag	11	10	2	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	2	17941357	17941357	G	A	SNP	GEN1	ENST00000317402	human	ensembl	69_37n	1	known	missense	c.147	p.M49I	0.953	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	GEN1	HGNC	ENSG00000178295	79	0	0	57	10	14.93	-	-	-	A	17941357	G	A	17941357	3	1	104	1	0	0	0	0	1	0	0	0	6387	1290	45	2	149	2	GEN1	2	17941357	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		17941357	225258016	2	6356										
DYSF	0	genome.wustl.edu	37	chr2	71891438	71891438	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	ctctgcctctggagaaggacCtaaagatcactctctatgac	8	12	4	3			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	2	71891438	71891438	C	G	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.5020	p.L1674V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	56	0	0	32	15	31.91	-	-	-	G	71891438	C	G	71891438	3	3	104	1	0	0	0	0	1	0	0	0	4894	680	24	4	5364	4	DYSF	2	71891438	Missense_Mutation	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09	53950081	71891438	171307935	3	6357										
PCDP1	0	genome.wustl.edu	37	chr2	120303820	120303820	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	ggagccgaaaaaaagaaaagAagtacctaatcacctcctag	8	9	1	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	2	120303820	120303820	A	T	SNP	PCDP1	ENST00000413369	human	ensembl	69_37n	1	known	missense	c.113	p.E38V	0.996	NULL	NULL	-	no_errors	AC069154.2	Clone_based_vega_gene	ENSG00000163075	12	0	0	5	6	54.55	-	-	-	T	120303820	A	T	120303820	3	4	104	1	0	0	0	0	1	0	0	0	11645	261	9	5		5	PCDP1	2	120303820	Missense_Mutation	SNP	A	TCGA-A2-A3XX-01A-21D-A23C-09	48412382	120303820	122895553	4	6358										
ATXN7	0	genome.wustl.edu	37	chr3	63898572	63898572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	agtcgtggaatctgtgggttGaggcttccaaacttcctggg	14	8	1	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	3	63898572	63898572	G	A	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	missense	c.298	p.E100K	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	48	0	0	26	4	13.33	-	-	-	A	63898572	G	A	63898572	3	1	104	1	0	0	0	0	1	0	0	0	1219	1291	45	2	300	2	ATXN7	3	63898572	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		63898572	134123858	5	6359										
FAM19A4	0	genome.wustl.edu	37	chr3	68788351	68788351	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	tttctgaatcacaatggaagCtggaaaacaaaggccaaata	8	7	2	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	3	68788351	68788351	C	A	SNP	FAM19A4	ENST00000295569	human	ensembl	69_37n	-1	known	splice_site	c.287-1	e4-1	1.000	-	-	-	no_errors	FAM19A4	HGNC	ENSG00000163377	90	0	0	56	13	18.84	-	-	-	A	68788351	C	A	68788351	5	1	104	1	0	0	0	0	0	0	1	0	5576	811	28	4	144	4	FAM19A4	3	68788351	Splice_Site	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09	4889779	68788351	129234079	6	6360										
OR5K4	0	genome.wustl.edu	37	chr3	98072873	98072873	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gcgtcgtcttctcacaccaaTgtacatctttctgggcaacc	7	14	4	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	3	98072873	98072873	T	A	SNP	OR5K4	ENST00000354924	human	ensembl	69_37n	1	known	missense	c.176	p.M59K	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5K4	HGNC	ENSG00000196098	93	0	0	38	48	55.81	-	-	-	A	98072873	T	A	98072873	3	1	104	1	0	0	0	0	1	0	0	0	11242	1464	51	5	178	5	OR5K4	3	98072873	Missense_Mutation	SNP	T	TCGA-A2-A3XX-01A-21D-A23C-09	29284522	98072873	99949557	7	6361										
ARAP2	0	genome.wustl.edu	37	chr4	36160390	36160390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	ctgaagagagtttagaagcaGcagaaggagcttgatataaa	12	4	0	5			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	4	36160390	36160390	G	T	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.2714	p.A905D	0.850	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	36	0	0	36	4	10	-	-	-	T	36160390	G	T	36160390	3	4	104	1	0	0	0	0	1	0	0	0	841	971	34	4	2476	4	ARAP2	4	36160390	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		36160390	154993886	8	6362										
SKIV2L2	0	genome.wustl.edu	37	chr5	54642950	54642950	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gaagcctatgcacttcaaatGaccaaattagatttcaacac	5	10	2	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	5	54642950	54642950	G	A	SNP	SKIV2L2	ENST00000230640	human	ensembl	69_37n	1	known	missense	c.1218	p.M406I	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	41	0	0	29	4	12.12	-	-	-	A	54642950	G	A	54642950	3	1	104	1	0	0	0	0	1	0	0	0	14449	1290	45	2	1260	2	SKIV2L2	5	54642950	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		54642950	126272310	9	6363										
PCDHB12	0	genome.wustl.edu	37	chr5	140590534	140590534	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gcccaggcccaggccgactcGctcactgtctacctggtggt	12	16	2	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	5	140590534	140590534	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	silent	c.2055	p.S685	0.012	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	216	0	0	100	56	35.9	-	-	-	A	140590534	G	A	140590534	2	1	104	1	0	0	0	0	0	0	0	1	11610	1074	38	1		1	PCDHB12	5	140590534	Silent	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	85947584	140590534	40324726	10	6364										
PI16	0	genome.wustl.edu	37	chr6	36930968	36930968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	caacagaggctccaccttgcGtaacaactgaggtcccttcc	8	15	0	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	6	36930968	36930968	G	A	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	missense	c.850	p.V284I	0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	84	0	0	91	22	19.47	-	-	-	A	36930968	G	A	36930968	3	1	104	1	0	0	0	0	1	0	0	0	11943	1145	40	1	868	1	PI16	6	36930968	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		36930968	134184099	11	6365										
ANKRD7	0	genome.wustl.edu	37	chr7	117868028	117868028	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	cttttatcctacaccactccGctgaatgactttataaggta	5	11	0	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	7	117868028	117868028	G	A	SNP	ANKRD7	ENST00000357099	human	ensembl	69_37n	1	known	silent	c.222	p.P74	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013	62	0	0	44	11	20	-	-	-	A	117868028	G	A	117868028	2	1	104	1	0	0	0	0	0	0	0	1	685	1102	38	1		1	ANKRD7	7	117868028	Silent	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		117868028	41270635	12	6366										
TRPV5	0	genome.wustl.edu	37	chr7	142605793	142605793	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	tcggtgactgctgctctgggAcgcggtccgggacagggagg	19	10	1	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	7	142605793	142605793	A	T	SNP	TRPV5	ENST00000265310	human	ensembl	69_37n	-1	known	missense	c.2077	p.S693T	0.993	prints_TRPV5_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV5_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412	71	0	0	55	14	20.29	-	-	-	T	142605793	A	T	142605793	3	4	104	1	0	0	0	0	1	0	0	0	16695	275	10	5	116	5	TRPV5	7	142605793	Missense_Mutation	SNP	A	TCGA-A2-A3XX-01A-21D-A23C-09	24737765	142605793	16532870	13	6367										
KIAA0196	0	genome.wustl.edu	37	chr8	126073417	126073417	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	atttgttttgagatctctctGaaccaagcttgaaggttttc	8	7	2	3			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	8	126073417	126073417	G	A	SNP	KIAA0196	ENST00000523273	human	ensembl	69_37n	-1	putative	missense	c.278	p.S93L	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0196	HGNC	ENSG00000164961	28	0	0	24	41	63.08	-	-	-	A	126073417	G	A	126073417	3	1	104	1	0	0	0	0	1	0	0	0	8213	1281	45	2	2123	2	KIAA0196	8	126073417	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		126073417	20290605	14	6368										
PDCD11	0	genome.wustl.edu	37	chr10	105173781	105173781	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	tgaggccttcaagccagggaAcactcacaagtgtagaatta	10	9	2	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	10	105173781	105173781	A	G	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.1244	p.N415S	0.689	superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	95	0	0	62	36	36.73	-	-	-	G	105173781	A	G	105173781	3	3	104	1	0	0	0	0	1	0	0	0	11690	43	2	5	1278	5	PDCD11	10	105173781	Missense_Mutation	SNP	A	TCGA-A2-A3XX-01A-21D-A23C-09		105173781	30360966	15	6369										
BUB3	0	genome.wustl.edu	37	chr10	124917337	124917337	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	ctggaagttgggatcagacaGttaaactgtgggatcccaga	13	7	1	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	10	124917337	124917337	G	C	SNP	BUB3	ENST00000368865	human	ensembl	69_37n	1	known	missense	c.358	p.V120L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BUB3	HGNC	ENSG00000154473	105	0	0	82	27	24.77	-	-	-	C	124917337	G	C	124917337	3	2	104	1	0	0	0	0	1	0	0	0	1581	1029	36	4	368	4	BUB3	10	124917337	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	19743556	124917337	10617410	16	6370										
TUBGCP2	0	genome.wustl.edu	37	chr10	135113636	135113636	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	acctcaaaagcacaaacatgAgtgatttaatgacggtaatt	7	7	1	3			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	10	135113636	135113636	A	T	SNP	TUBGCP2	ENST00000487796	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	28	0	0	45	15	25	-	-	-	T	135113636	A	T	135113636	1	4	104	0	1	0	0	0	0	0	0	0	16863	319	11	5		5	TUBGCP2	10	135113636	RNA	SNP	A	TCGA-A2-A3XX-01A-21D-A23C-09	10196299	135113636	421111	17	6371										
CRABP1	0	genome.wustl.edu	37	chr15	78632841	78632841	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	cgagctgctcaaggcactggGtaagctggtgcagagggcgc	17	10	1	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	15	78632841	78632841	G	C	SNP	CRABP1	ENST00000299529	human	ensembl	69_37n	1	known	splice_site	c.70+1	e1+1	1.000	-	-	-	no_errors	CRABP1	HGNC	ENSG00000166426	117	0	0	55	18	24.66	-	-	-	C	78632841	G	C	78632841	5	2	104	1	0	0	0	0	0	0	1	0	3873	1275	44	4	73	4	CRABP1	15	78632841	Splice_Site	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		78632841	23898551	18	6372										
KIAA1024	0	genome.wustl.edu	37	chr15	79750273	79750273	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	ggaagaagagctgaagaccaGtgtgtgcaaactggtgctca	14	7	1	4			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	15	79750273	79750273	G	C	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	missense	c.1784	p.S595T	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	45	0	0	25	5	16.67	-	-	-	C	79750273	G	C	79750273	3	2	104	1	0	0	0	0	1	0	0	0	8257	1029	36	4	1786	4	KIAA1024	15	79750273	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	1117432	79750273	22781119	19	6373										
OTOA	0	genome.wustl.edu	37	chr16	21771829	21771829	+	Silent	SNP	C	C	T													0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gtctttggcttggttgtcccCtgctggttctaatggccaag							TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	16	21771829	21771829	C	T	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	silent	c.3430	p.L1144	0.750	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	125	0	0	98	40	28.99	-	-	-	T	21771829	C	T	21771829	2	4	104	1	0	0	0	0	0	0	0	1	11375	680	24	4		4	OTOA	16	21771829	Silent	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09		21771829	68582924	20	6374	48	2								
OTOA	0	genome.wustl.edu	37	chr16	21771830	21771830	+	Missense_Mutation	SNP	T	T	G													0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	tctttggcttggttgtccccTgctggttctaatggccaagc							TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	16	21771830	21771830	T	G	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.3431	p.L1144R	0.836	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	125	0	0	97	39	28.68	-	-	-	G	21771830	T	G	21771830	3	3	104	1	0	0	0	0	1	0	0	0	11375	1580	55	5	3545	5	OTOA	16	21771830	Missense_Mutation	SNP	T	TCGA-A2-A3XX-01A-21D-A23C-09	1	21771830	68582923	21	6375	48	2								
TP53	0	genome.wustl.edu	37	chr17	7579355	7579355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	tcccagaatgcaagaagcccAgacggaaaccgtagctgccc	10	14	0	3			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	17	7579355	7579355	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.332	p.L111P	0.684	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	80	0	0	20	41	67.21	-	-	-	G	7579355	A	G	7579355	3	3	104	1	0	0	0	0	1	0	0	0	16477	188	7	5	970	5	TP53	17	7579355	Missense_Mutation	SNP	A	TCGA-A2-A3XX-01A-21D-A23C-09		7579355	73615855	22	6376										
REXO1	0	genome.wustl.edu	37	chr19	1827048	1827050	+	In_Frame_Del	DEL	TGG	TGG	-													0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gaggaggaggaggaggaggaTggggcgggggaggggggcgg							TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	1827048	1827050	TGG	-	DEL	REXO1	ENST00000170168	human	ensembl	69_37n	-1	known	in_frame_del	c.1740_1738	p.P580in_frame_del	0.000:0.001:0.001	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	11	0	0	4	2	33.33	-	-	-	-	1827050	TGG	-	1827048	7	5	104	1	0	1	0	1	0	0	0	0	13324	1451	51	0	1985	0	REXO1	19	1827048	In_Frame_Del	DEL	TGG	TCGA-A2-A3XX-01A-21D-A23C-09		1827048	57301935	23	6377										
MUC16	0	genome.wustl.edu	37	chr19	9027223	9027223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gactggtacttactcgtgggGctggggctggaggatggagt	19	6	0	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	9027223	9027223	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.36663	p.S12221R	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	77	0	0	48	14	22.58	-	-	-	T	9027223	G	T	9027223	3	4	104	1	0	0	0	0	1	0	0	0	10045	1194	42	4	7148	4	MUC16	19	9027223	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	7200175	9027223	50101760	24	6378										
ZNF536	0	genome.wustl.edu	37	chr19	30935398	30935398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gttgtgcgacttcgcggcttCgcaggaggaggagctcatca	15	10	2	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	30935398	30935398	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.929	p.S310L	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	87	0	0	51	34	40	-	-	-	T	30935398	C	T	30935398	3	4	104	1	0	0	0	0	1	0	0	0	18070	893	31	1	931	1	ZNF536	19	30935398	Missense_Mutation	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09	21908175	30935398	28193585	25	6379										
PPM1N	0	genome.wustl.edu	37	chr19	46002919	46002919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gggcgtggtcttttggaaagGggcgattctgggtcgtagga	19	5	2	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	46002919	46002919	G	T	SNP	PPM1N	ENST00000324688	human	ensembl	69_37n	1	known	missense	c.955	p.G319W	0.006	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1N	HGNC	ENSG00000213889	93	0	0	96	22	18.64	-	-	-	T	46002919	G	T	46002919	3	4	104	1	0	0	0	0	1	0	0	0	12423	1247	43	4		4	PPM1N	19	46002919	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	15067521	46002919	13126064	26	6380										
PRPF31	0	genome.wustl.edu	37	chr19	54627965	54627965	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gcgcaagacgctgtcgggctTctcgtctacctcagtgctgc	12	14	3	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	54627965	54627965	T	A	SNP	PRPF31	ENST00000321030	human	ensembl	69_37n	1	known	missense	c.785	p.F262Y	1.000	pfam_SnoRNA-bd_dom	pfam_SnoRNA-bd_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618	176	0	0	52	34	39.53	-	-	-	A	54627965	T	A	54627965	3	1	104	1	0	0	0	0	1	0	0	0	12647	1783	62	5	811	5	PRPF31	19	54627965	Missense_Mutation	SNP	T	TCGA-A2-A3XX-01A-21D-A23C-09	8625046	54627965	4501018	27	6381										
ZNF784	0	genome.wustl.edu	37	chr19	56133136	56133136	+	Frame_Shift_Del	DEL	T	T	-													0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	cctactggtcggcctccaccTtcaccttcgcggtctccccc							TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	56133136	56133136	T	-	DEL	ZNF784	ENST00000325351	human	ensembl	69_37n	-1	known	frame_shift_del	c.953	p.K318fs	0.113	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF784	HGNC	ENSG00000179922	42	0	0	13	2	13.33	-	-	-	-	56133136	T	-	56133136	7	5	104	1	0	1	0	1	0	0	0	0	18249	1609	56	0	22	0	ZNF784	19	56133136	Frame_Shift_Del	DEL	T	TCGA-A2-A3XX-01A-21D-A23C-09	1505171	56133136	2995847	28	6382										
NLRP4	0	genome.wustl.edu	37	chr19	56370215	56370215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	gtgtacaggaattgctagttGccaattttgaaaaagcaagg	11	5	0	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	19	56370215	56370215	G	T	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	missense	c.1456	p.A486S	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	57	0	0	33	12	26.67	-	-	-	T	56370215	G	T	56370215	3	4	104	1	0	0	0	0	1	0	0	0	10551	1319	46	4	1462	4	NLRP4	19	56370215	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	237079	56370215	2758768	29	6383										
SLC4A11	0	genome.wustl.edu	37	chr20	3209991	3209991	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	caccgcccggccccaactcaCtctcgatttcccggaagcca	7	20	2	0			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	20	3209991	3209991	C	T	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	splice_site	c.1978+1	e15+1	1.000	-	-	-	no_errors	SLC4A11	HGNC	ENSG00000088836	73	0	0	37	36	48.65	-	-	-	T	3209991	C	T	3209991	5	4	104	1	0	0	0	0	0	0	1	0	14741	579	20	4	801	4	SLC4A11	20	3209991	Splice_Site	SNP	C	TCGA-A2-A3XX-01A-21D-A23C-09		3209991	59815529	30	6384										
PTPRT	0	genome.wustl.edu	37	chr20	41306714	41306714	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	aggatgatggggccatccccGatgatggagttggcatttgg	16	7	0	2			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	20	41306714	41306714	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.945	p.I315	0.209	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	116	0	0	103	19	15.57	-	-	-	A	41306714	G	A	41306714	2	1	104	1	0	0	0	0	0	0	0	1	12895	1048	37	1		1	PTPRT	20	41306714	Silent	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09	38096723	41306714	21718806	31	6385										
HTR2C	0	genome.wustl.edu	37	chrX	114141666	114141666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.129032258064516	4	0.43133704843654	1.85411764705882	0	2.78117647058824	0.0285714285714286	0.251737451737452	0	cttctgaatgtgtttgtttgGattggctatgtttgttcagg	12	4	2	1			TCGA-A2-A3XX-01A-21D-A23C-09	TCGA-A2-A3XX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67409b2-ac25-42a0-8543-4636ef132fe4	e96d5811-4736-40dd-966d-e0e172aeb0af	X	114141666	114141666	G	T	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	missense	c.1065	p.W355C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	62	0	0	35	11	23.91	-	-	-	T	114141666	G	T	114141666	3	4	104	1	0	0	0	0	1	0	0	0	7497	1183	41	2	1079	2	HTR2C	23	114141666	Missense_Mutation	SNP	G	TCGA-A2-A3XX-01A-21D-A23C-09		114141666	41128894	32	6386										
CASZ1	0	genome.wustl.edu	37	chr1	10713493	10713493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ccagcctggccatcatgggcGagatgaggcccttgcttgca	13	13	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	1	10713493	10713493	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.2621	p.S874L	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	198	0	0	138	22	13.75	-	-	-	A	10713493	G	A	10713493	3	1	105	1	0	0	0	0	1	0	0	0	2710	1059	37	1	2706	1	CASZ1	1	10713493	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09		10713493	238537128	1	6387										
NBPF1	0	genome.wustl.edu	37	chr1	16889890	16889891	+	RNA	DEL	TG	TG	-													0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ccaattggaggctgaaggacTgtggcttctctaaccaaagg							TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	1	16889890	16889891	TG	-	DEL	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	11	0	0	4	2	33.33	-	-	-	-	16889891	TG	-	16889890	6	5	105	0	1	1	0	1	0	0	0	0	10264	1595	55	0		0	NBPF1	1	16889890	RNA	DEL	TG	TCGA-A2-A3XY-01A-11D-A23C-09	6176397	16889890	232360731	2	6388										
SPRED2	0	genome.wustl.edu	37	chr2	65561392	65561392	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tgggcccgccagaatccattCtctacttctgagccaagaca	8	14	2	3			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	2	65561392	65561392	C	T	SNP	SPRED2	ENST00000426832	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	0.254	NULL	pfam_EVH1,pfscan_EVH1	-	no_start_codon	SPRED2	HGNC	ENSG00000198369	38	0	0	25	4	13.79	-	-	-	T	65561392	C	T	65561392	2	4	105	1	0	0	0	0	0	0	0	1	15184	928	32	2		2	SPRED2	2	65561392	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		65561392	177637981	3	6389										
TTLL4	0	genome.wustl.edu	37	chr2	219602492	219602492	+	Frame_Shift_Del	DEL	G	G	-													0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tcaggcacagtacctgccacGccacctgagaaaccctcgga							TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	2	219602492	219602492	G	-	DEL	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	frame_shift_del	c.93	p.P32fs	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	52	0	0	52	7	11.86	-	-	-	-	219602492	G	-	219602492	7	5	105	1	0	1	0	1	0	0	0	0	16826	1074	38	0	95	0	TTLL4	2	219602492	Frame_Shift_Del	DEL	G	TCGA-A2-A3XY-01A-11D-A23C-09	154041100	219602492	23596881	4	6390										
ZFYVE20	0	genome.wustl.edu	37	chr3	15126258	15126258	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ctacttgccaagggaaggctGatgagctccatacacttctt	9	11	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	3	15126258	15126258	G	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	silent	c.582	p.I194	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	35	0	0	23	7	23.33	-	-	-	A	15126258	G	A	15126258	2	1	105	1	0	0	0	0	0	0	0	1	17762	1280	45	2		2	ZFYVE20	3	15126258	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09		15126258	182896172	5	6391										
DALRD3	0	genome.wustl.edu	37	chr3	49055154	49055154	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	aggggacagtgtcctcccgtCattagcagaggtaagttctt	12	9	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	3	49055154	49055154	C	A	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.610	p.D204Y	0.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	114	0	0	108	17	13.6	-	-	-	A	49055154	C	A	49055154	3	1	105	1	0	0	0	0	1	0	0	0	4261	826	29	2	1061	2	DALRD3	3	49055154	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	33928896	49055154	148967276	6	6392										
GNAT1	0	genome.wustl.edu	37	chr3	50231619	50231619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tcttcatcgcggcgctgagcGcctacgacatggtgctagtg	13	12	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	3	50231619	50231619	G	A	SNP	GNAT1	ENST00000232461	human	ensembl	69_37n	1	known	missense	c.673	p.A225T	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT1	HGNC	ENSG00000114349	90	0	0	58	13	18.31	-	-	-	A	50231619	G	A	50231619	3	1	105	1	0	0	0	0	1	0	0	0	6563	1087	38	1	695	1	GNAT1	3	50231619	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	1176465	50231619	147790811	7	6393										
ITIH1	0	genome.wustl.edu	37	chr3	52814347	52814347	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gatgcccaggcctctttcctGccgaaggaactggcagccca	11	15	1	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	3	52814347	52814347	G	T	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	silent	c.636	p.L212	0.678	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	47	0	0	36	4	10	-	-	-	T	52814347	G	T	52814347	2	4	105	1	0	0	0	0	0	0	0	1	7957	1306	46	4		4	ITIH1	3	52814347	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	2582728	52814347	145208083	8	6394										
COL6A5	0	genome.wustl.edu	37	chr3	130190630	130190630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	attagggaacaatcatagtaGtggttctgagacagctactg	11	6	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	3	130190630	130190630	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.7679	p.S2560N	0.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	57	0	0	37	5	11.9	-	-	-	A	130190630	G	A	130190630	3	1	105	1	0	0	0	0	1	0	0	0	3732	1044	36	4		4	COL6A5	3	130190630	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	77376283	130190630	67831800	9	6395										
HAUS3	0	genome.wustl.edu	37	chr4	2240617	2240617	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	agcaatctgcagatcaaaatCtccctttaccactggcatat	5	12	3	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	4	2240617	2240617	C	G	SNP	HAUS3	ENST00000243706	human	ensembl	69_37n	-1	known	missense	c.1063	p.D355H	1.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367	52	0	0	39	8	17.02	-	-	-	G	2240617	C	G	2240617	3	3	105	1	0	0	0	0	1	0	0	0	7018	913	32	2	760	2	HAUS3	4	2240617	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		2240617	188913659	10	6396										
AGPAT9	0	genome.wustl.edu	37	chr4	84516078	84516078	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	cctcatgtctggtttgaacgCtcagaaatgaaggatcgaca	10	9	3	3			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	4	84516078	84516078	C	T	SNP	AGPAT9	ENST00000264409	human	ensembl	69_37n	1	known	silent	c.819	p.R273	0.670	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT9	HGNC	ENSG00000138678	125	0	0	70	10	12.5	-	-	-	T	84516078	C	T	84516078	2	4	105	1	0	0	0	0	0	0	0	1	392	784	28	4		4	AGPAT9	4	84516078	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	82275461	84516078	106638198	11	6397										
MAST4	0	genome.wustl.edu	37	chr5	66088133	66088133	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tgtctaccccttgcccctgtCgtagagctgtaagccatcct	8	15	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	5	66088133	66088133	C	T	SNP	MAST4	ENST00000451144	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MAST4	HGNC	ENSG00000069020	155	0	0	107	17	13.6	-	-	-	T	66088133	C	T	66088133	1	4	105	0	1	0	0	0	0	0	0	0	9398	899	31	1		1	MAST4	5	66088133	RNA	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		66088133	114827127	12	6398										
LRFN2	0	genome.wustl.edu	37	chr6	40399625	40399625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ctctccgcccccactgcctcCacctccccggctggtcttgc	7	23	2	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	6	40399625	40399625	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	missense	c.1228	p.G410R	0.916	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	51	0	0	70	8	10.26	-	-	-	T	40399625	C	T	40399625	3	4	105	1	0	0	0	0	1	0	0	0	9004	603	21	4	1149	4	LRFN2	6	40399625	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		40399625	130715442	13	6399										
LRFN2	0	genome.wustl.edu	37	chr6	40400198	40400198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	agccgaagcctgggagcgggCaaagatgggatcagggggca	19	8	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	6	40400198	40400198	C	A	SNP	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	missense	c.655	p.A219S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	84	0	0	74	20	21.28	-	-	-	A	40400198	C	A	40400198	3	1	105	1	0	0	0	0	1	0	0	0	9004	710	25	4	1722	4	LRFN2	6	40400198	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	573	40400198	130714869	14	6400										
CUL7	0	genome.wustl.edu	37	chr6	43010839	43010839	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tccaccacggcccgccaacaGcgcgtcaggtttctcatgat	9	16	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	6	43010839	43010839	G	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	silent	c.3687	p.R1229	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	38	0	0	36	4	10	-	-	-	T	43010839	G	T	43010839	2	4	105	1	0	0	0	0	0	0	0	1	4091	958	34	4		4	CUL7	6	43010839	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	2610641	43010839	128104228	15	6401										
PAQR8	0	genome.wustl.edu	37	chr6	52268978	52268978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gacccctatctgtccacatgGcctgcctctccttcttcttc	5	18	4	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	6	52268978	52268978	G	T	SNP	PAQR8	ENST00000360726	human	ensembl	69_37n	1	known	missense	c.967	p.A323S	0.998	NULL	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915	33	0	0	47	7	12.96	-	-	-	T	52268978	G	T	52268978	3	4	105	1	0	0	0	0	1	0	0	0	11514	1203	42	4	969	4	PAQR8	6	52268978	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	9258139	52268978	118846089	16	6402										
NAMPT	0	genome.wustl.edu	37	chr7	105913026	105913026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tggatctgtgttttccaccgTgaagagaacatttcctctgg	10	9	2	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	7	105913026	105913026	T	G	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	missense	c.397	p.T133P	1.000	pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835	87	0	0	49	7	12.5	-	-	-	G	105913026	T	G	105913026	3	3	105	1	0	0	0	0	1	0	0	0	10221	1696	59	5	1110	5	NAMPT	7	105913026	Missense_Mutation	SNP	T	TCGA-A2-A3XY-01A-11D-A23C-09		105913026	53225637	17	6403										
IMMP2L	0	genome.wustl.edu	37	chr7	110303527	110303527	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tatttaataatacagatcgtTttaatgtgctgtaaatattt	5	3	0	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	7	110303527	110303527	T	C	SNP	IMMP2L	ENST00000489381	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IMMP2L	HGNC	ENSG00000184903	23	0	0	7	3	30	-	-	-	C	110303527	T	C	110303527	1	2	105	0	1	0	0	0	0	0	0	0	7771	1856	64	5		5	IMMP2L	7	110303527	RNA	SNP	T	TCGA-A2-A3XY-01A-11D-A23C-09	4390501	110303527	48835136	18	6404										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885923	88885923	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gtacttggagcctccagcttCgacttggttcactgtgaaga	11	10	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	8	88885923	88885923	C	A	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	nonsense	c.277	p.E93*	0.055	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	131	0	0	160	34	17.35	-	-	-	A	88885923	C	A	88885923	4	1	105	1	0	0	0	0	0	1	0	0	4304	893	31	3	914	3	DCAF4L2	8	88885923	Nonsense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		88885923	57478099	19	6405										
CIZ1	0	genome.wustl.edu	37	chr9	130940822	130940822	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tccccaggcccaagagctgcCttctccgtccgcagccagaa	9	18	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	9	130940822	130940822	C	T	SNP	CIZ1	ENST00000475471	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CIZ1	HGNC	ENSG00000148337	28	0	0	20	4	16.67	-	-	-	T	130940822	C	T	130940822	1	4	105	0	1	0	0	0	0	0	0	0	3471	696	24	4		4	CIZ1	9	130940822	RNA	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		130940822	10272609	20	6406										
SPTAN1	0	genome.wustl.edu	37	chr9	131394575	131394575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gctgggcatgcgcatgcagcAcaacctggagcagcagatcc	13	13	0	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	9	131394575	131394575	A	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.6932	p.H2311R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	43	0	0	32	8	20	-	-	-	G	131394575	A	G	131394575	3	3	105	1	0	0	0	0	1	0	0	0	15208	159	6	5	7138	5	SPTAN1	9	131394575	Missense_Mutation	SNP	A	TCGA-A2-A3XY-01A-11D-A23C-09	453753	131394575	9818856	21	6407										
DPP7	0	genome.wustl.edu	37	chr9	140006171	140006171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tgcccaggggtccaggttccCgttggagaagatgatgttgc	15	9	0	3			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	9	140006171	140006171	C	T	SNP	DPP7	ENST00000371579	human	ensembl	69_37n	-1	known	missense	c.1243	p.G415R	0.978	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978	103	0	0	45	9	16.67	-	-	-	T	140006171	C	T	140006171	3	4	105	1	0	0	0	0	1	0	0	0	4766	652	23	1	247	1	DPP7	9	140006171	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	8611596	140006171	1207260	22	6408										
TTC17	0	genome.wustl.edu	37	chr11	43511840	43511840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	cagccctctactggagggtgAaaggccaaggaaagaaggca	14	9	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	43511840	43511840	A	G	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.3082	p.K1028E	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	55	0	0	26	9	25.71	-	-	-	G	43511840	A	G	43511840	3	3	105	1	0	0	0	0	1	0	0	0	16781	247	9	5	3168	5	TTC17	11	43511840	Missense_Mutation	SNP	A	TCGA-A2-A3XY-01A-11D-A23C-09		43511840	91494676	23	6409										
CHST1	0	genome.wustl.edu	37	chr11	45671968	45671968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ggaccaggtcggctggccccGgagggtcgcacacaggccgg	18	14	0	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	45671968	45671968	G	A	SNP	CHST1	ENST00000308064	human	ensembl	69_37n	-1	known	missense	c.506	p.P169L	0.002	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264	58	0	0	35	5	12.5	-	-	-	A	45671968	G	A	45671968	3	1	105	1	0	0	0	0	1	0	0	0	3426	1116	39	1	733	1	CHST1	11	45671968	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	2160128	45671968	89334548	24	6410										
FOLH1	0	genome.wustl.edu	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	48	0	0	33	7	17.5	-	-	-	T	49204779	C	T	49204779	3	4	105	1	0	0	0	0	1	0	0	0	6025	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	3532811	49204779	85801737	25	6411			1	9		2	2	12	N	C_A	1.883255e-05
FOLH1	0	genome.wustl.edu	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	44	0	0	30	9	23.08	-	-	-	G	49204790	A	G	49204790	2	3	105	1	0	0	0	0	0	0	0	1	6025	224	8	5		5	FOLH1	11	49204790	Silent	SNP	A	TCGA-A2-A3XY-01A-11D-A23C-09	11	49204790	85801726	26	6412			1	9		2	2	12	N	C_A	1.883255e-05
OR5T2	0	genome.wustl.edu	37	chr11	56000263	56000263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	acctgtgctacacatccaagGaatgaaatgactttattctt	6	9	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	56000263	56000263	G	T	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	missense	c.399	p.F133L	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	65	0	0	58	24	29.27	-	-	-	T	56000263	G	T	56000263	3	4	105	1	0	0	0	0	1	0	0	0	11255	1165	41	2	679	2	OR5T2	11	56000263	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	6795473	56000263	79006253	27	6413										
OR5M11	0	genome.wustl.edu	37	chr11	56310545	56310545	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tccacaaaggctaagttagtGaggaagaagtacatgggcgt	13	6	0	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	56310545	56310545	G	A	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	silent	c.189	p.L63	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	58	0	0	85	13	13.27	-	-	-	A	56310545	G	A	56310545	2	1	105	1	0	0	0	0	0	0	0	1	11247	1277	45	2		2	OR5M11	11	56310545	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	310282	56310545	78695971	28	6414										
TUT1	0	genome.wustl.edu	37	chr11	62344705	62344705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gagggtgtacacgaggggccGgactcgaccatccagctcag	15	12	1	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	62344705	62344705	G	A	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	missense	c.1333	p.R445W	0.989	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	35	0	0	34	6	15	-	-	-	A	62344705	G	A	62344705	3	1	105	1	0	0	0	0	1	0	0	0	16877	1115	39	1	1421	1	TUT1	11	62344705	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	6034160	62344705	72661811	29	6415										
C11orf30	0	genome.wustl.edu	37	chr11	76239376	76239376	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tagtgaacaaacaagacagcTagtaacagaaacattacagc	7	8	0	3			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	76239376	76239376	T	C	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.2060	p.L687P	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	29	0	0	41	7	14.58	-	-	-	C	76239376	T	C	76239376	3	2	105	1	0	0	0	0	1	0	0	0	1647	1522	53	5	2110	5	C11orf30	11	76239376	Missense_Mutation	SNP	T	TCGA-A2-A3XY-01A-11D-A23C-09	13894671	76239376	58767140	30	6416										
MYO7A	0	genome.wustl.edu	37	chr11	76872063	76872063	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tggattgtggacaagatcaaCgcagcaatttacaagcctcc	9	10	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	11	76872063	76872063	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	silent	c.1245	p.N415	0.042	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	128	0	0	101	13	11.4	-	-	-	T	76872063	C	T	76872063	2	4	105	1	0	0	0	0	0	0	0	1	10154	535	19	1		1	MYO7A	11	76872063	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	632687	76872063	58134453	31	6417										
PPP1R1A	0	genome.wustl.edu	37	chr12	54969998	54969998	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gtggggtggtggggaggcagActgcttcaagcttgggagtc	20	6	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	12	54969998	54969998	A	G	SNP	PPP1R1A	ENST00000547431	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	9	0	0	5	10	66.67	-	-	-	G	54969998	A	G	54969998	1	3	105	0	1	0	0	0	0	0	0	0	12444	290	10	5		5	PPP1R1A	12	54969998	RNA	SNP	A	TCGA-A2-A3XY-01A-11D-A23C-09		54969998	78881897	32	6418										
SUDS3	0	genome.wustl.edu	37	chr12	118828801	118828801	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gaaagcttgttctcagacacActgttactgcaagtgtgtgt	10	8	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	12	118828801	118828801	A	G	SNP	SUDS3	ENST00000397564	human	ensembl	69_37n	1	known	silent	c.345	p.T115	0.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707	50	0	0	27	5	15.62	-	-	-	G	118828801	A	G	118828801	2	3	105	1	0	0	0	0	0	0	0	1	15458	174	6	5		5	SUDS3	12	118828801	Silent	SNP	A	TCGA-A2-A3XY-01A-11D-A23C-09	63858803	118828801	15023094	33	6419										
RASA3	0	genome.wustl.edu	37	chr13	114786882	114786882	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ggtgcaacatcatcttaccaCgcctcgtaggagctggactg	11	12	2	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	13	114786882	114786882	C	T	SNP	RASA3	ENST00000334062	human	ensembl	69_37n	-1	known	silent	c.783	p.A261	0.960	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,prints_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASA3	HGNC	ENSG00000185989	54	0	0	42	10	19.23	-	-	-	T	114786882	C	T	114786882	2	4	105	1	0	0	0	0	0	0	0	1	13145	523	19	1		1	RASA3	13	114786882	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		114786882	382996	34	6420										
HEATR5A	0	genome.wustl.edu	37	chr14	31858209	31858209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	gcgaatgctttgacgtgaggCtgctatgacaaagaacaaaa	11	7	0	4			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	14	31858209	31858209	C	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.757	p.A253T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	68	0	0	43	5	10.42	-	-	-	T	31858209	C	T	31858209	3	4	105	1	0	0	0	0	1	0	0	0	7082	812	28	4		4	HEATR5A	14	31858209	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		31858209	75491331	35	6421										
CRIP1	0	genome.wustl.edu	37	chr14	105953599	105953599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	accggacccggagccgtcatGcccaagtgtcccaagtgcaa	11	15	1	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	14	105953599	105953599	G	T	SNP	CRIP1	ENST00000330233	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CRIP1	HGNC	ENSG00000213145	25	0	0	19	4	17.39	-	-	-	T	105953599	G	T	105953599	3	4	105	1	0	0	0	0	1	0	0	0	3904	1319	46	4	5	4	CRIP1	14	105953599	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	74095390	105953599	1395941	36	6422										
SLC28A2	0	genome.wustl.edu	37	chr15	45557310	45557310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ttcctgaactacactgtggcCggctccagttttgtctttgg	10	11	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	15	45557310	45557310	C	T	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	1	known	silent	c.726	p.A242	0.802	pfam_Nuclsd_transpt2,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	64	0	0	45	20	30.77	-	-	-	T	45557310	C	T	45557310	2	4	105	1	0	0	0	0	0	0	0	1	14621	639	23	1		1	SLC28A2	15	45557310	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		45557310	56974082	37	6423										
C15orf39	0	genome.wustl.edu	37	chr15	75498684	75498684	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tgttctaccgctcgccagcaGaaggccctgagaagatgcag	12	12	1	3			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	15	75498684	75498684	G	T	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	nonsense	c.295	p.E99*	0.401	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	54	0	0	47	8	14.55	-	-	-	T	75498684	G	T	75498684	4	4	105	1	0	0	0	0	0	1	0	0	1805	943	33	2	297	2	C15orf39	15	75498684	Nonsense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	29941374	75498684	27032708	38	6424										
WHAMM	0	genome.wustl.edu	37	chr15	83491923	83491923	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ttaaagtcattgactgtgtgGtggggctgcaggatgataag	15	4	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	15	83491923	83491923	G	C	SNP	WHAMM	ENST00000286760	human	ensembl	69_37n	1	known	missense	c.1342	p.V448L	0.005	NULL	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232	106	0	0	75	11	12.79	-	-	-	C	83491923	G	C	83491923	3	2	105	1	0	0	0	0	1	0	0	0	17458	1261	44	4	1364	4	WHAMM	15	83491923	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	7993239	83491923	19039469	39	6425										
AKAP13	0	genome.wustl.edu	37	chr15	86286780	86286780	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	cgttcttccccagtcctgagGagcccccctcgccatctgca	8	19	2	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	15	86286780	86286780	G	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.8128	p.E2710Q	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	67	0	0	57	13	18.57	-	-	-	C	86286780	G	C	86286780	3	2	105	1	0	0	0	0	1	0	0	0	449	1175	41	2	8324	2	AKAP13	15	86286780	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	2794857	86286780	16244612	40	6426										
ZNF747	0	genome.wustl.edu	37	chr16	30544048	30544048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tcgccagtgtgaacgcgcagGtgagaagtcagcgccgtgcg	16	11	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	16	30544048	30544048	G	A	SNP	ZNF747	ENST00000535210	human	ensembl	69_37n	-1	known	silent	c.765	p.H255	0.982	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF747	HGNC	ENSG00000169955	152	0	0	105	17	13.93	-	-	-	A	30544048	G	A	30544048	2	1	105	1	0	0	0	0	0	0	0	1	18224	1276	44	4		4	ZNF747	16	30544048	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09		30544048	59810705	41	6427										
TP53	0	genome.wustl.edu	37	chr17	7578370	7578370	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tctccagccccagctgctcaCcatcgctatctgagcagcgc	8	18	3	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	17	7578370	7578370	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	43	0	0	24	9	27.27	-	-	-	T	7578370	C	T	7578370	5	4	105	1	0	0	0	0	0	0	1	0	16477	521	18	4	738	4	TP53	17	7578370	Splice_Site	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		7578370	73616840	42	6428										
ITGB4	0	genome.wustl.edu	37	chr17	73753041	73753041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	cagggccagccaccgcattcCgggtggatggagacagcccc	14	15	0	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	17	73753041	73753041	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.5071	p.R1691W	1.000	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	47	0	0	48	8	14.29	-	-	-	T	73753041	C	T	73753041	3	4	105	1	0	0	0	0	1	0	0	0	7951	643	23	1	5380	1	ITGB4	17	73753041	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	66174671	73753041	7442169	43	6429										
CNDP1	0	genome.wustl.edu	37	chr18	72223592	72223594	+	In_Frame_Del	DEL	TGC	TGC	-													0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ggctgcgtccctgctggctgTgctgctgctgctgctggagc							TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	18	72223592	72223594	TGC	-	DEL	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	in_frame_del	c.44_46	p.L19in_frame_del	0.574:0.612:0.628	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	72	0	0	36	4	10	-	-	-	-	72223594	TGC	-	72223592	7	5	105	1	0	1	0	1	0	0	0	0	3623	1696	59	0	50	0	CNDP1	18	72223592	In_Frame_Del	DEL	TGC	TCGA-A2-A3XY-01A-11D-A23C-09		72223592	5853656	44	6430										
NLRP13	0	genome.wustl.edu	37	chr19	56424072	56424072	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	attcactaatgaggccttaaGatctctcacaaaccaggtct	6	11	4	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	19	56424072	56424072	G	T	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	missense	c.1111	p.L371I	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	47	0	0	35	9	20.45	-	-	-	T	56424072	G	T	56424072	3	4	105	1	0	0	0	0	1	0	0	0	10547	942	33	2	2046	2	NLRP13	19	56424072	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09		56424072	2704911	45	6431										
NOP56	0	genome.wustl.edu	37	chr20	2633420	2633421	+	RNA	INS	-	-	G													0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ctgcgcctgcgcctgcgcctINSgccctgggaacgggttccgg							TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	20	2633420	2633421	-	G	INS	NOP56	ENST00000469588	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003:0.000	-	-	-	no_errors	NOP56	HGNC	ENSG00000101361	11	0	0	2	5	71.43	-	-	-	G	2633421	-	G	2633420	6	5	105	0	1	1	1	0	0	0	0	0	10611	1595	55	0		0	NOP56	20	2633420	RNA	INS	-	TCGA-A2-A3XY-01A-11D-A23C-09		2633420	60392100	46	6432										
MYBL2	0	genome.wustl.edu	37	chr20	42340188	42340188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	tgcgttctgaggctggcatcGaactcatcatcgaggacgac	12	11	3	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	20	42340188	42340188	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.1666	p.E556K	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	45	0	0	49	7	12.5	-	-	-	A	42340188	G	A	42340188	3	1	105	1	0	0	0	0	1	0	0	0	10082	1059	37	1	1708	1	MYBL2	20	42340188	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	39706768	42340188	20685332	47	6433										
PRIC285	0	genome.wustl.edu	37	chr20	62191954	62191954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	agggcagctctccttgccagCgtggcccaggacactgggcg	15	14	1	0			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	20	62191954	62191954	C	T	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	missense	c.7378	p.A2460T	0.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	56	0	0	45	8	15.09	-	-	-	T	62191954	C	T	62191954	3	4	105	1	0	0	0	0	1	0	0	0	12566	768	27	1	587	1	PRIC285	20	62191954	Missense_Mutation	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09	19851766	62191954	833566	48	6434										
NIPSNAP1	0	genome.wustl.edu	37	chr22	29951936	29951936	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	aggcagcatcactgcagaggCgagatcttcaaggggatcat	13	9	4	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	22	29951936	29951936	C	T	SNP	NIPSNAP1	ENST00000216121	human	ensembl	69_37n	-1	known	silent	c.843	p.S281	0.068	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP1	HGNC	ENSG00000184117	38	0	0	22	6	21.43	-	-	-	T	29951936	C	T	29951936	2	4	105	1	0	0	0	0	0	0	0	1	10501	755	27	1		1	NIPSNAP1	22	29951936	Silent	SNP	C	TCGA-A2-A3XY-01A-11D-A23C-09		29951936	21352630	49	6435										
TIMP3	0	genome.wustl.edu	37	chr22	33253339	33253339	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	ggtcaacaagtaccagtaccTgctgacaggtaatggccaac	10	11	1	1			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	22	33253339	33253339	T	C	SNP	TIMP3	ENST00000266085	human	ensembl	69_37n	1	known	missense	c.308	p.L103P	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234	78	0	0	47	14	22.95	-	-	-	C	33253339	T	C	33253339	3	2	105	1	0	0	0	0	1	0	0	0	16014	1580	55	5	318	5	TIMP3	22	33253339	Missense_Mutation	SNP	T	TCGA-A2-A3XY-01A-11D-A23C-09	3301403	33253339	18051227	50	6436										
CPT1B	0	genome.wustl.edu	37	chr22	51015382	51015382	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	agggtttggcggaagaagaaGatgcccgtcacccagacgcc	14	11	1	4			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	22	51015382	51015382	G	A	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	silent	c.363	p.I121	1.000	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	62	0	0	31	6	16.22	-	-	-	A	51015382	G	A	51015382	2	1	105	1	0	0	0	0	0	0	0	1	3862	932	33	2		2	CPT1B	22	51015382	Silent	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09	17762043	51015382	289184	51	6437										
HUWE1	0	genome.wustl.edu	37	chrX	53561637	53561637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	agaagccttctaagaaagccGccaactgcttgcggatggct	11	11	1	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	X	53561637	53561637	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12671	p.A4224V	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	43	0	0	25	6	19.35	-	-	-	A	53561637	G	A	53561637	3	1	105	1	0	0	0	0	1	0	0	0	7515	1087	38	1	465	1	HUWE1	23	53561637	Missense_Mutation	SNP	G	TCGA-A2-A3XY-01A-11D-A23C-09		53561637	101708923	52	6438										
CHM	0	genome.wustl.edu	37	chrX	85302527	85302527	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.635774605960771	1.3435960591133	2.59761904761905	1.1989010989011	0.282051282051282	0.930327025915261	0	atcaaactccgaagggagagTatccgccatcttgacgggaa	11	10	2	2			TCGA-A2-A3XY-01A-11D-A23C-09	TCGA-A2-A3XY-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5978cf32-c471-4f15-879f-398acec6a866	7a45c59e-841d-4e59-8c8c-f071064f28fc	X	85302527	85302527	T	C	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.10	p.T4A	0.982	pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	64	0	0	38	6	13.04	-	-	-	C	85302527	T	C	85302527	3	2	105	1	0	0	0	0	1	0	0	0	3379	1638	57	5	2034	5	CHM	23	85302527	Missense_Mutation	SNP	T	TCGA-A2-A3XY-01A-11D-A23C-09	31740890	85302527	69968033	53	6439										
SEMA6C	0	genome.wustl.edu	37	chr1	151107088	151107088	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tgcaacagcagctgcctcttCtgtttaccttggcagtcacc	8	14	3	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	1	151107088	151107088	C	T	SNP	SEMA6C	ENST00000489944	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SEMA6C	HGNC	ENSG00000143434	42	0	0	25	5	16.67	-	-	-	T	151107088	C	T	151107088	1	4	106	0	1	0	0	0	0	0	0	0	14129	928	32	2		2	SEMA6C	1	151107088	RNA	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		151107088	98143533	1	6440										
LINGO4	0	genome.wustl.edu	37	chr1	151774341	151774341	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	ggattctgggacagatccagGaccctgaggaagctgaggtg	16	8	1	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	1	151774341	151774341	G	T	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	silent	c.840	p.V280	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	83	0	0	38	24	38.71	-	-	-	T	151774341	G	T	151774341	2	4	106	1	0	0	0	0	0	0	0	1	8873	1161	41	2		2	LINGO4	1	151774341	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	667253	151774341	97476280	2	6441										
GPR113	0	genome.wustl.edu	37	chr2	26534175	26534175	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	ttgagcagggcggcgtggcgGaaataggagatcttgttccg	17	7	1	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	26534175	26534175	G	A	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	silent	c.1824	p.F608	0.994	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	32	0	0	18	7	28	-	-	-	A	26534175	G	A	26534175	2	1	106	1	0	0	0	0	0	0	0	1	6680	1165	41	2		2	GPR113	2	26534175	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		26534175	216665198	3	6442										
EIF2AK2	0	genome.wustl.edu	37	chr2	37334464	37334464	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gggcttttcttccacacagtCaaggtccttagtatttcaga	8	10	3	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	37334464	37334464	C	G	SNP	EIF2AK2	ENST00000233057	human	ensembl	69_37n	-1	known	missense	c.1608	p.L536F	0.815	pfam_Ser-Thr/Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ds-RNA-bd,superfamily_Kinase-like_dom,smart_Ds-RNA-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ds-RNA-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332	158	0	0	113	20	15.04	-	-	-	G	37334464	C	G	37334464	3	3	106	1	0	0	0	0	1	0	0	0	5032	825	29	2	51	2	EIF2AK2	2	37334464	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	10800289	37334464	205864909	4	6443										
NEB	0	genome.wustl.edu	37	chr2	152507221	152507221	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	acttcttggccagtaccactCccaacatgtccactgggctg	8	15	1	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	152507221	152507221	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.7094	p.G2365A	0.987	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	108	0	0	65	25	27.78	-	-	-	G	152507221	C	G	152507221	3	3	106	1	0	0	0	0	1	0	0	0	10374	855	30	2	19112	2	NEB	2	152507221	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	115172757	152507221	90692152	5	6444										
ICA1L	0	genome.wustl.edu	37	chr2	203693719	203693719	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tatcttctggtctgggttgcCcaaaggaatccatggagtga	12	8	3	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	203693719	203693719	C	G	SNP	ICA1L	ENST00000358299	human	ensembl	69_37n	-1	known	missense	c.14	p.G5A	0.909	NULL	pfam_Islet_autoAg_Ica1_C,pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596	99	0	0	52	16	23.19	-	-	-	G	203693719	C	G	203693719	3	3	106	1	0	0	0	0	1	0	0	0	7532	623	22	4	1496	4	ICA1L	2	203693719	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	51186498	203693719	39505654	6	6445										
RUFY4	0	genome.wustl.edu	37	chr2	218940228	218940228	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gactcacaaaaaggaagcagAgtggagtcacgtccagaggc	13	9	2	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	218940228	218940228	A	T	SNP	RUFY4	ENST00000374155	human	ensembl	69_37n	1	known	missense	c.1073	p.E358V	0.043	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,pfscan_Run	-	no_errors	RUFY4	HGNC	ENSG00000188282	61	0	0	32	8	20	-	-	-	T	218940228	A	T	218940228	3	4	106	1	0	0	0	0	1	0	0	0	13827	304	11	5	1039	5	RUFY4	2	218940228	Missense_Mutation	SNP	A	TCGA-A2-A3XZ-01A-42D-A23C-09	15246509	218940228	24259145	7	6446										
ARMC9	0	genome.wustl.edu	37	chr2	232220647	232220647	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gtcctgcgtctcctcttcatGtaagaatgtgggcagcacac	10	12	3	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	2	232220647	232220647	G	A	SNP	ARMC9	ENST00000483477	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931	50	0	0	26	4	13.33	-	-	-	A	232220647	G	A	232220647	5	1	106	1	0	0	0	0	0	0	1	0	962	1392	48	4		4	ARMC9	2	232220647	Splice_Site	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	13280419	232220647	10978726	8	6447										
KAT2B	0	genome.wustl.edu	37	chr3	20168950	20168950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tgctttaattaaagatggccGtgttattggtggtatctgtt	11	4	1	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	3	20168950	20168950	G	A	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	missense	c.1658	p.R553H	1.000	pirsf_Hist_acetylase_PCAF,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	107	0	0	84	16	16	-	-	-	A	20168950	G	A	20168950	3	1	106	1	0	0	0	0	1	0	0	0	8036	1145	40	1	1700	1	KAT2B	3	20168950	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		20168950	177853480	9	6448										
RBM5	0	genome.wustl.edu	37	chr3	50152930	50152930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tggtggagagacttgagagtGaggaagagaagctagctgac	17	4	0	5			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	3	50152930	50152930	G	A	SNP	RBM5	ENST00000347869	human	ensembl	69_37n	1	known	missense	c.1909	p.E637K	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	121	0	0	52	14	21.21	-	-	-	A	50152930	G	A	50152930	3	1	106	1	0	0	0	0	1	0	0	0	13226	1291	45	2	1987	2	RBM5	3	50152930	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	29983980	50152930	147869500	10	6449										
DNAH12	0	genome.wustl.edu	37	chr3	57327764	57327764	+	RNA	DEL	T	T	-													0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tatattttaagtaggacaggTttttttttttttaaactttt							TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	3	57327764	57327764	T	-	DEL	DNAH12	ENST00000462713	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAH12	HGNC	ENSG00000174844	12	0	0	7	4	36.36	-	-	-	-	57327764	T	-	57327764	6	5	106	0	1	1	0	1	0	0	0	0	4636	1740	60	0		0	DNAH12	3	57327764	RNA	DEL	T	TCGA-A2-A3XZ-01A-42D-A23C-09	7174834	57327764	140694666	11	6450										
USP46	0	genome.wustl.edu	37	chr4	53468094	53468094	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	actgcatcactggaggtgttGaagagccggagttccagagg	15	8	1	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	4	53468094	53468094	G	A	SNP	USP46	ENST00000441222	human	ensembl	69_37n	-1	known	silent	c.849	p.F283	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP46	HGNC	ENSG00000109189	159	0	0	78	15	16.13	-	-	-	A	53468094	G	A	53468094	2	1	106	1	0	0	0	0	0	0	0	1	17174	1281	45	2		2	USP46	4	53468094	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		53468094	137686182	12	6451										
KLHL8	0	genome.wustl.edu	37	chr4	88099658	88099658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	agattacacccacatgtcgcCttcgactattcatttctggt	6	12	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	4	88099658	88099658	C	T	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.1067	p.R356K	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	57	0	0	25	9	26.47	-	-	-	T	88099658	C	T	88099658	3	4	106	1	0	0	0	0	1	0	0	0	8448	681	24	4	819	4	KLHL8	4	88099658	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	34631564	88099658	103054618	13	6452										
CENPE	0	genome.wustl.edu	37	chr4	104065751	104065751	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tgtcatcttaagaaactgatAttctttttcttgagattctt	5	6	5	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	4	104065751	104065751	A	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.4882	p.Y1628H	0.001	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	69	0	0	50	18	26.47	-	-	-	G	104065751	A	G	104065751	3	3	106	1	0	0	0	0	1	0	0	0	3259	449	16	5	3291	5	CENPE	4	104065751	Missense_Mutation	SNP	A	TCGA-A2-A3XZ-01A-42D-A23C-09	15966093	104065751	87088525	14	6453										
ANK2	0	genome.wustl.edu	37	chr4	114251449	114251449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	ccgaggtggtgctatgcgagGatgcagacacaatgggctcc	15	10	0	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	4	114251449	114251449	G	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2948	p.G983V	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	83	0	0	45	5	10	-	-	-	T	114251449	G	T	114251449	3	4	106	1	0	0	0	0	1	0	0	0	621	1174	41	2	3119	2	ANK2	4	114251449	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	10185698	114251449	76902827	15	6454										
NR2E1	0	genome.wustl.edu	37	chr6	108497706	108497706	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tttctctgtttgcctctgcaGccgtgcagcacgagcggggg	14	12	2	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	6	108497706	108497706	G	A	SNP	NR2E1	ENST00000368986	human	ensembl	69_37n	1	known	splice_site	c.260-1	e4-1	1.000	-	-	-	no_errors	NR2E1	HGNC	ENSG00000112333	69	0	0	30	6	16.67	-	-	-	A	108497706	G	A	108497706	5	1	106	1	0	0	0	0	0	0	1	0	10698	985	34	4	273	4	NR2E1	6	108497706	Splice_Site	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		108497706	62617361	16	6455										
PPIL4	0	genome.wustl.edu	37	chr6	149867100	149867100	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	cgttcttcggtgtacaagtcGatgacgacgtcgcctaaagt	11	10	1	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	6	149867100	149867100	G	A	SNP	PPIL4	ENST00000253329	human	ensembl	69_37n	-1	known	silent	c.42	p.I14	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013	101	0	0	65	11	14.47	-	-	-	A	149867100	G	A	149867100	2	1	106	1	0	0	0	0	0	0	0	1	12406	1048	37	1		1	PPIL4	6	149867100	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	41369394	149867100	21247967	17	6456										
DLL1	0	genome.wustl.edu	37	chr6	170592883	170592883	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	ggtggcccctctcgtggcagGtggccccattgtggcagggt	17	12	1	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	6	170592883	170592883	G	C	SNP	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	missense	c.1484	p.T495S	1.000	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	32	0	0	13	5	27.78	-	-	-	C	170592883	G	C	170592883	3	2	106	1	0	0	0	0	1	0	0	0	4602	1261	44	4	699	4	DLL1	6	170592883	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	20725783	170592883	522184	18	6457										
FSCN1	0	genome.wustl.edu	37	chr7	5643182	5643182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	accggcgcatcacactgaggGcgtccaatggcaagtttgtg	13	11	1	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	7	5643182	5643182	G	T	SNP	FSCN1	ENST00000382361	human	ensembl	69_37n	1	known	missense	c.1045	p.A349S	0.996	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618	71	0	0	38	9	19.15	-	-	-	T	5643182	G	T	5643182	3	4	106	1	0	0	0	0	1	0	0	0	6116	1203	42	4	1055	4	FSCN1	7	5643182	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		5643182	153495481	19	6458										
ELMO1	0	genome.wustl.edu	37	chr7	37053009	37053009	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gatctgtcgtgggtgaagaaCatcgggtggaagtcgttgca	16	6	1	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	7	37053009	37053009	C	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.1332	p.M444I	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	34	0	0	36	5	12.2	-	-	-	A	37053009	C	A	37053009	3	1	106	1	0	0	0	0	1	0	0	0	5102	478	17	4	879	4	ELMO1	7	37053009	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	31409827	37053009	122085654	20	6459										
GIGYF1	0	genome.wustl.edu	37	chr7	100281706	100281706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gctgctgctgctgctgctgtGgcggcggcggtggtggcggt	21	10	0	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	7	100281706	100281706	G	A	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.1805	p.P602L	0.121	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	36	0	0	18	4	18.18	-	-	-	A	100281706	G	A	100281706	3	1	106	1	0	0	0	0	1	0	0	0	6429	1348	47	4	1342	4	GIGYF1	7	100281706	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	63228697	100281706	58856957	21	6460										
GIMAP8	0	genome.wustl.edu	37	chr7	150171141	150171141	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	agtccacaggacccgagcagAatccggggacatcagaactg	12	12	1	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	7	150171141	150171141	A	T	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.724	p.N242Y	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	95	0	0	72	8	10	-	-	-	T	150171141	A	T	150171141	3	4	106	1	0	0	0	0	1	0	0	0	6437	246	9	5	734	5	GIMAP8	7	150171141	Missense_Mutation	SNP	A	TCGA-A2-A3XZ-01A-42D-A23C-09	49889435	150171141	8967522	22	6461										
GOLGA7	0	genome.wustl.edu	37	chr8	41367260	41367260	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	ttccacacctggagtgacctCtagtcgctcagcatccactt	7	15	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	8	41367260	41367260	C	G	SNP	GOLGA7	ENST00000521417	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.104	-	-	-	no_errors	GOLGA7	HGNC	ENSG00000147533	58	0	0	33	6	15.38	-	-	-	G	41367260	C	G	41367260	1	3	106	0	1	0	0	0	0	0	0	0	6611	928	32	2		2	GOLGA7	8	41367260	RNA	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		41367260	104996762	23	6462										
BHLHE22	0	genome.wustl.edu	37	chr8	65494021	65494023	+	In_Frame_Del	DEL	GCA	GCA	-													0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tagcggtagcggcagcggcgGcagcagcagcagcagcagca							TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	8	65494021	65494023	GCA	-	DEL	BHLHE22	ENST00000321870	human	ensembl	69_37n	1	known	in_frame_del	c.674_676	p.S229in_frame_del	0.703:0.675:0.587	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	BHLHE22	HGNC	ENSG00000180828	12	0	0	9	3	25	-	-	-	-	65494023	GCA	-	65494021	7	5	106	1	0	1	0	1	0	0	0	0	1426	1203	42	0	676	0	BHLHE22	8	65494021	In_Frame_Del	DEL	GCA	TCGA-A2-A3XZ-01A-42D-A23C-09	24126761	65494021	80870001	24	6463										
UBR5	0	genome.wustl.edu	37	chr8	103291367	103291367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	atgtcatggagtctgaacgtCggaaaaatggatggttttgg	14	4	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	8	103291367	103291367	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.6071	p.R2024Q	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	56	0	0	31	4	11.43	-	-	-	T	103291367	C	T	103291367	3	4	106	1	0	0	0	0	1	0	0	0	17002	884	31	1	2396	1	UBR5	8	103291367	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	37797346	103291367	43072655	25	6464										
RECK	0	genome.wustl.edu	37	chr9	36087761	36087761	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	aagagaatcctgatgtccaaGaaaacggaaatggagattgt	11	5	0	4			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	9	36087761	36087761	G	T	SNP	RECK	ENST00000377966	human	ensembl	69_37n	1	known	missense	c.708	p.K236N	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Prot_inh_PMP,smart_Prot_inh_Kazal	-	no_errors	RECK	HGNC	ENSG00000122707	133	0	0	72	11	13.25	-	-	-	T	36087761	G	T	36087761	3	4	106	1	0	0	0	0	1	0	0	0	13283	933	33	2	742	2	RECK	9	36087761	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		36087761	105125670	26	6465										
XPA	0	genome.wustl.edu	37	chr9	100449497	100449497	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gtctttcagaagatattcttGttttgcctctgttttggtta	8	6	4	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	9	100449497	100449497	G	T	SNP	XPA	ENST00000375128	human	ensembl	69_37n	-1	known	missense	c.436	p.Q146K	1.000	pfam_XPA_C,superfamily_DNA-bd_dom_put,tigrfam_XPA	pfam_XPA_C,pfam_Znf_XPA_CS,superfamily_DNA-bd_dom_put,tigrfam_XPA	-	no_errors	XPA	HGNC	ENSG00000136936	31	0	0	18	3	14.29	-	-	-	T	100449497	G	T	100449497	3	4	106	1	0	0	0	0	1	0	0	0	17537	1386	48	4	397	4	XPA	9	100449497	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	64361736	100449497	40763934	27	6466										
SH2D3C	0	genome.wustl.edu	37	chr9	130500738	130500738	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gtgaggaggcgtgagcagccTgcctcccatggctcgaaaac	14	12	0	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	9	130500738	130500738	T	C	SNP	SH2D3C	ENST00000473535	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SH2D3C	HGNC	ENSG00000095370	71	0	0	44	11	20	-	-	-	C	130500738	T	C	130500738	1	2	106	0	1	0	0	0	0	0	0	0	14322	1595	55	5		5	SH2D3C	9	130500738	RNA	SNP	T	TCGA-A2-A3XZ-01A-42D-A23C-09	30051241	130500738	10712693	28	6467										
UCP2	0	genome.wustl.edu	37	chr11	73689402	73689402	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	agtggcagtagggggcacatCtgtggccttgaacccaacca	13	11	1	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	11	73689402	73689402	C	T	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	missense	c.22	p.D8N	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	49	0	0	37	6	13.95	-	-	-	T	73689402	C	T	73689402	3	4	106	1	0	0	0	0	1	0	0	0	17028	913	32	2	931	2	UCP2	11	73689402	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		73689402	61317114	29	6468										
CWF19L2	0	genome.wustl.edu	37	chr11	107299906	107299906	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	cttgattttgccttgggttaGattctcttctacacgtttct	7	9	3	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	11	107299906	107299906	G	C	SNP	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	missense	c.1052	p.S351C	0.000	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	100	0	0	46	9	16.36	-	-	-	C	107299906	G	C	107299906	3	2	106	1	0	0	0	0	1	0	0	0	4103	942	33	2	1676	2	CWF19L2	11	107299906	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09	33610504	107299906	27706610	30	6469										
CCDC15	0	genome.wustl.edu	37	chr11	124862526	124862526	+	Frame_Shift_Del	DEL	G	G	-													0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gtgagagaagaattgcctctGgactatcatcaatatgttgt							TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	11	124862526	124862526	G	-	DEL	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	frame_shift_del	c.2082	p.D695fs	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	36	0	0	10	2	16.67	-	-	-	-	124862526	G	-	124862526	7	5	106	1	0	1	0	1	0	0	0	0	2809	1335	47	0	2116	0	CCDC15	11	124862526	Frame_Shift_Del	DEL	G	TCGA-A2-A3XZ-01A-42D-A23C-09	17562620	124862526	10143990	31	6470										
GPRC5D	0	genome.wustl.edu	37	chr12	13102974	13102974	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	acacaaccccgaaccagcttCactagattggaggcatgagc	9	13	1	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	12	13102974	13102974	C	T	SNP	GPRC5D	ENST00000228887	human	ensembl	69_37n	-1	known	silent	c.345	p.V115	0.933	pfam_GPCR_3_C	pfam_GPCR_3_C	-	no_errors	GPRC5D	HGNC	ENSG00000111291	92	0	0	52	8	13.33	-	-	-	T	13102974	C	T	13102974	2	4	106	1	0	0	0	0	0	0	0	1	6778	813	29	2		2	GPRC5D	12	13102974	Silent	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		13102974	120748921	32	6471										
GNS	0	genome.wustl.edu	37	chr12	65116868	65116868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	attccaccaggacatctgatCgccaggtcaagttactggca	9	12	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	12	65116868	65116868	C	T	SNP	GNS	ENST00000258145	human	ensembl	69_37n	-1	known	missense	c.1226	p.R409Q	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677	75	0	0	43	5	10.42	-	-	-	T	65116868	C	T	65116868	3	4	106	1	0	0	0	0	1	0	0	0	6602	884	31	1	448	1	GNS	12	65116868	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	52013894	65116868	68735027	33	6472										
LATS2	0	genome.wustl.edu	37	chr13	21563388	21563388	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tggtaggacgcaaacgaatcGccggttccttcgaagctggg	14	10	0	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	13	21563388	21563388	G	T	SNP	LATS2	ENST00000382592	human	ensembl	69_37n	-1	known	silent	c.531	p.G177	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	90	0	0	55	10	15.38	-	-	-	T	21563388	G	T	21563388	2	4	106	1	0	0	0	0	0	0	0	1	8701	1074	38	3		3	LATS2	13	21563388	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		21563388	93606490	34	6473										
ATP8A2	0	genome.wustl.edu	37	chr13	26138117	26138117	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gatgcctcctccctgtagtgAttcctgtgactttgatgacc	9	12	0	4			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	13	26138117	26138117	A	T	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	missense	c.1421	p.D474V	0.874	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC	ENSG00000132932	70	0	0	37	8	17.78	-	-	-	T	26138117	A	T	26138117	3	4	106	1	0	0	0	0	1	0	0	0	1197	333	12	5	1483	5	ATP8A2	13	26138117	Missense_Mutation	SNP	A	TCGA-A2-A3XZ-01A-42D-A23C-09	4574729	26138117	89031761	35	6474										
SLC43A2	0	genome.wustl.edu	37	chr17	1486601	1486601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tagtgatcttctggatctgcCggtcccgcttcttctttttc	8	12	5	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	17	1486601	1486601	C	T	SNP	SLC43A2	ENST00000382147	human	ensembl	69_37n	-1	known	missense	c.1259	p.R420Q	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703	136	0	0	52	21	28.77	-	-	-	T	1486601	C	T	1486601	3	4	106	1	0	0	0	0	1	0	0	0	14722	652	23	1	478	1	SLC43A2	17	1486601	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		1486601	79708609	36	6475										
GRN	0	genome.wustl.edu	37	chr17	42427675	42427675	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tccacgtgctgtgttatggtCgatggctcctgggggtgctg	16	9	0	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	17	42427675	42427675	C	A	SNP	GRN	ENST00000053867	human	ensembl	69_37n	1	known	silent	c.429	p.V143	0.000	pfam_Granulin,smart_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582	89	0	0	55	8	12.7	-	-	-	A	42427675	C	A	42427675	2	1	106	1	0	0	0	0	0	0	0	1	6855	871	31	3		3	GRN	17	42427675	Silent	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	40941074	42427675	38767535	37	6476										
DCAF7	0	genome.wustl.edu	37	chr17	61661011	61661011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	cacagcatcacccactgcttCgcctctgctggaacaagcag	8	16	2	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	17	61661011	61661011	C	T	SNP	DCAF7	ENST00000310827	human	ensembl	69_37n	1	known	missense	c.676	p.R226C	0.996	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485	108	0	0	69	10	12.66	-	-	-	T	61661011	C	T	61661011	3	4	106	1	0	0	0	0	1	0	0	0	4307	893	31	1	695	1	DCAF7	17	61661011	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	19233336	61661011	19534199	38	6477										
KLHL14	0	genome.wustl.edu	37	chr18	30260203	30260203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	aagtgtgaattgcacgttttGtgttcatatcttgttttcga	9	5	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	18	30260203	30260203	G	T	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	missense	c.1517	p.T506K	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	70	0	0	41	5	10.87	-	-	-	T	30260203	G	T	30260203	3	4	106	1	0	0	0	0	1	0	0	0	8423	1377	48	4	381	4	KLHL14	18	30260203	Missense_Mutation	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		30260203	47817045	39	6478										
SIGLEC10	0	genome.wustl.edu	37	chr19	51920149	51920149	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	aacacacagatgaccgtcacCggctgcccgggctccagggt	12	15	1	2			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	19	51920149	51920149	C	T	SNP	SIGLEC10	ENST00000339313	human	ensembl	69_37n	-1	known	silent	c.477	p.P159	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC10	HGNC	ENSG00000142512	201	1	0.5	106	16	13.11	-	-	-	T	51920149	C	T	51920149	2	4	106	1	0	0	0	0	0	0	0	1	14395	639	23	1		1	SIGLEC10	19	51920149	Silent	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		51920149	7208834	40	6479										
ZNF83	0	genome.wustl.edu	37	chr19	53117169	53117169	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	atgttgtgcaaggtgtgaaaTttgatggaagacctttccac	11	6	0	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	19	53117169	53117169	T	A	SNP	ZNF83	ENST00000301096	human	ensembl	69_37n	-1	known	missense	c.649	p.I217F	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766	41	0	0	35	7	16.67	-	-	-	A	53117169	T	A	53117169	3	1	106	1	0	0	0	0	1	0	0	0	18276	1493	52	5	905	5	ZNF83	19	53117169	Missense_Mutation	SNP	T	TCGA-A2-A3XZ-01A-42D-A23C-09	1197020	53117169	6011814	41	6480										
TOMM34	0	genome.wustl.edu	37	chr20	43577409	43577409	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gattccaggttactacacaaGaggctttcactgtacttctc	7	11	2	1			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	20	43577409	43577409	G	C	SNP	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	silent	c.660	p.L220	0.980	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	122	0	0	88	10	10.2	-	-	-	C	43577409	G	C	43577409	2	2	106	1	0	0	0	0	0	0	0	1	16452	929	33	2		2	TOMM34	20	43577409	Silent	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		43577409	19448111	42	6481										
IFT27	0	genome.wustl.edu	37	chr22	37157021	37157021	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tggcgccagcccttggctgcGtctcaagctgcgtttgctta	12	13	1	0			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	22	37157021	37157021	G	A	SNP	IFT27	ENST00000474616	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IFT27	HGNC	ENSG00000100360	152	0	0	73	14	16.09	-	-	-	A	37157021	G	A	37157021	1	1	106	0	1	0	0	0	0	0	0	0	7613	1160	40	1		1	IFT27	22	37157021	RNA	SNP	G	TCGA-A2-A3XZ-01A-42D-A23C-09		37157021	14147545	43	6482										
PCYT1B	0	genome.wustl.edu	37	chrX	24625919	24625919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	tgcttgcataagggctcttgCatgacctgagtggaagaggt	14	7	1	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	X	24625919	24625919	C	T	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.277	p.A93T	1.000	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	63	0	0	35	8	18.6	-	-	-	T	24625919	C	T	24625919	3	4	106	1	0	0	0	0	1	0	0	0	11684	710	25	4	893	4	PCYT1B	23	24625919	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09		24625919	130644641	44	6483										
CXorf22	0	genome.wustl.edu	37	chrX	35969264	35969264	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gtagagtgattttgcaaggtCaacctgagatgctcttgagt	12	6	2	4			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	X	35969264	35969264	C	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	nonsense	c.673	p.Q225*	0.007	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	42	0	0	25	6	19.35	-	-	-	T	35969264	C	T	35969264	4	4	106	1	0	0	0	0	0	1	0	0	4133	827	29	2	691	2	CXorf22	23	35969264	Nonsense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	11343345	35969264	119301296	45	6484										
MSN	0	genome.wustl.edu	37	chrX	64959699	64959699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	10	0.0232933241422878	2.49458874458874	3.99134199134199	1.995670995671	0.66992140985949	1	6	gagacaaatacaagaccctgCgccagatccggcagggcaac	11	13	0	3			TCGA-A2-A3XZ-01A-42D-A23C-09	TCGA-A2-A3XZ-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c2a05d-7caa-4362-9be1-17ac4bbeb721	7bcc1bd0-f9a3-4d1c-ba0d-1cc038653aae	X	64959699	64959699	C	T	SNP	MSN	ENST00000360270	human	ensembl	69_37n	1	known	missense	c.1678	p.R560C	1.000	pirsf_ERM,pfam_ERM_C,superfamily_Moesin,prints_Ez/rad/moesin	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	82	0	0	57	11	16.18	-	-	-	T	64959699	C	T	64959699	3	4	106	1	0	0	0	0	1	0	0	0	9957	768	27	1	1728	1	MSN	23	64959699	Missense_Mutation	SNP	C	TCGA-A2-A3XZ-01A-42D-A23C-09	28990435	64959699	90310861	46	6485										
CALML6	0	genome.wustl.edu	37	chr1	1848258	1848258	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	taccatgagaaggcccagaaCcaggagagcgagctgagggc	15	10	0	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	1848258	1848258	C	G	SNP	CALML6	ENST00000307786	human	ensembl	69_37n	1	known	missense	c.321	p.N107K	0.991	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML6	HGNC	ENSG00000169885	39	0	0	62	9	12.68	-	-	-	G	1848258	C	G	1848258	3	3	107	1	0	0	0	0	1	0	0	0	2615	506	18	4	335	4	CALML6	1	1848258	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		1848258	247402363	1	6486										
PRKCZ	0	genome.wustl.edu	37	chr1	2103743	2103743	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	taactttgcccccacaggaaGgcctgggccctggtgacaca	11	14	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	2103743	2103743	G	C	SNP	PRKCZ	ENST00000378567	human	ensembl	69_37n	1	known	missense	c.1201	p.G401R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606	47	0	0	22	31	58.49	-	-	-	C	2103743	G	C	2103743	3	2	107	1	0	0	0	0	1	0	0	0	12598	1000	35	4	1251	4	PRKCZ	1	2103743	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	255485	2103743	247146878	2	6487										
CCDC27	0	genome.wustl.edu	37	chr1	3683150	3683150	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aagagatgatggggctcattGaaaaggacaaccagctcctc	11	9	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	3683150	3683150	G	A	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	missense	c.1504	p.E502K	0.975	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	43	0	0	24	37	60.66	-	-	-	A	3683150	G	A	3683150	3	1	107	1	0	0	0	0	1	0	0	0	2827	1291	45	2	1538	2	CCDC27	1	3683150	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	1579407	3683150	245567471	3	6488										
KCNAB2	0	genome.wustl.edu	37	chr1	6100694	6100694	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cggcagacgggctcccccggGatgatctacaggtgaccccc	13	16	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	6100694	6100694	G	C	SNP	KCNAB2	ENST00000472700	human	ensembl	69_37n	1	putative	missense	c.17	p.G6A	1.000	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNAB2	HGNC	ENSG00000069424	19	0	0	7	16	69.57	-	-	-	C	6100694	G	C	6100694	3	2	107	1	0	0	0	0	1	0	0	0	8064	1161	41	2	68	2	KCNAB2	1	6100694	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	2417544	6100694	243149927	4	6489										
ATPIF1	0	genome.wustl.edu	37	chr1	28562699	28562699	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgcagctccagcagcaatggCagtgacggcgttggcggcgc	16	12	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	28562699	28562699	C	G	SNP	ATPIF1	ENST00000335514	human	ensembl	69_37n	1	known	missense	c.5	p.A2G	0.979	NULL	pfam_ATPase_inhibitor_IATP_mt	-	no_errors	ATPIF1	HGNC	ENSG00000130770	166	0	0	179	29	13.94	-	-	-	G	28562699	C	G	28562699	3	3	107	1	0	0	0	0	1	0	0	0	1207	710	25	4	7	4	ATPIF1	1	28562699	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	22462005	28562699	220687922	5	6490										
CCDC30	0	genome.wustl.edu	37	chr1	43042704	43042704	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cctctagataaagattgaacTaaagcatgcccaacagaagt	7	9	1	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	43042704	43042704	T	G	SNP	CCDC30	ENST00000340612	human	ensembl	69_37n	1	known	missense	c.869	p.L290R	1.000	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409	31	0	0	42	7	14.29	-	-	-	G	43042704	T	G	43042704	3	3	107	1	0	0	0	0	1	0	0	0	2831	1522	53	5	891	5	CCDC30	1	43042704	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	14480005	43042704	206207917	6	6491										
CCDC17	0	genome.wustl.edu	37	chr1	46087625	46087625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggggatctctcctccccttcGgttgtaggctggcatccccc	11	16	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	46087625	46087625	G	A	SNP	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	missense	c.914	p.P305L	0.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	61	0	0	68	25	26.6	-	-	-	A	46087625	G	A	46087625	3	1	107	1	0	0	0	0	1	0	0	0	2819	1116	39	1	882	1	CCDC17	1	46087625	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	3044921	46087625	203162996	7	6492										
FAM69A	0	genome.wustl.edu	37	chr1	93309463	93309463	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgaacagctgatccatgcttCttctgaacccagatggaata	8	10	2	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	93309463	93309463	C	G	SNP	FAM69A	ENST00000370310	human	ensembl	69_37n	-1	known	missense	c.764	p.R255T	1.000	pfam_Uncharacterised_FAM69	pfam_Uncharacterised_FAM69	-	no_errors	FAM69A	HGNC	ENSG00000154511	49	0	0	52	31	37.35	-	-	-	G	93309463	C	G	93309463	3	3	107	1	0	0	0	0	1	0	0	0	5647	913	32	2	526	2	FAM69A	1	93309463	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	47221838	93309463	155941158	8	6493										
DENND2C	0	genome.wustl.edu	37	chr1	115127989	115127989	+	RNA	DEL	A	A	-													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cacatagaaaaggctgctatAaaaaaaaaatggagacagag							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	115127989	115127989	A	-	DEL	DENND2C	ENST00000495031	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DENND2C	HGNC	ENSG00000175984	12	0	0	18	3	14.29	-	-	-	-	115127989	A	-	115127989	6	5	107	0	1	1	0	1	0	0	0	0	4466	377	13	0		0	DENND2C	1	115127989	RNA	DEL	A	TCGA-A2-A3Y0-01A-11D-A23C-09	21818526	115127989	134122632	9	6494										
HSD3B1	0	genome.wustl.edu	37	chr1	120056825	120056825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgttaacccagtctatgttGgcaatgtggcctgggcccac	11	12	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	120056825	120056825	G	A	SNP	HSD3B1	ENST00000235547	human	ensembl	69_37n	1	known	missense	c.685	p.G229S	1.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857	56	0	0	97	38	28.15	-	-	-	A	120056825	G	A	120056825	3	1	107	1	0	0	0	0	1	0	0	0	7441	1348	47	4	689	4	HSD3B1	1	120056825	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	4928836	120056825	129193796	10	6495										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150528007	150528007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgggaccctgtgtcagcctgGagcccctgacatctgtgtgg	14	12	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	150528007	150528007	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	missense	c.1406	p.G469E	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	29	0	0	33	22	40	-	-	-	A	150528007	G	A	150528007	3	1	107	1	0	0	0	0	1	0	0	0	277	1174	41	2	1359	2	ADAMTSL4	1	150528007	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	30471182	150528007	98722614	11	6496										
RFX5	0	genome.wustl.edu	37	chr1	151316744	151316744	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggtcttcctccttatgccacTgtagcaatatctgatgcaag	8	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	151316744	151316744	T	A	SNP	RFX5	ENST00000290524	human	ensembl	69_37n	-1	known	missense	c.484	p.S162C	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390	42	0	0	54	22	28.95	-	-	-	A	151316744	T	A	151316744	3	1	107	1	0	0	0	0	1	0	0	0	13349	1580	55	5	1382	5	RFX5	1	151316744	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	788737	151316744	97933877	12	6497										
LELP1	0	genome.wustl.edu	37	chr1	153177231	153177231	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aatgaccccaagactgagccCaagaactgcgatcccaagtg	9	13	0	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	153177231	153177231	C	T	SNP	LELP1	ENST00000368747	human	ensembl	69_37n	1	known	silent	c.48	p.P16	0.906	NULL	NULL	-	no_errors	LELP1	HGNC	ENSG00000203784	32	0	0	73	11	12.94	-	-	-	T	153177231	C	T	153177231	2	4	107	1	0	0	0	0	0	0	0	1	8772	581	21	4		4	LELP1	1	153177231	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1860487	153177231	96073390	13	6498										
SNAPIN	0	genome.wustl.edu	37	chr1	153631808	153631808	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tttcagggatgtcttaaatcTctaatggctgtggcccgttt	10	8	3	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	153631808	153631808	T	G	SNP	SNAPIN	ENST00000478558	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNAPIN	HGNC	ENSG00000143553	28	0	0	36	19	34.55	-	-	-	G	153631808	T	G	153631808	1	3	107	0	1	0	0	0	0	0	0	0	14928	1566	54	5		5	SNAPIN	1	153631808	RNA	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	454577	153631808	95618813	14	6499										
ADAM15	0	genome.wustl.edu	37	chr1	155028475	155028475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agtggccctcttgctggacaCagtgagtgctggacagggca	15	10	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	155028475	155028475	C	T	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	missense	c.743	p.T248I	0.986	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	56	0	0	83	39	31.97	-	-	-	T	155028475	C	T	155028475	3	4	107	1	0	0	0	0	1	0	0	0	237	492	17	4	773	4	ADAM15	1	155028475	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1396667	155028475	94222146	15	6500										
IGSF9	0	genome.wustl.edu	37	chr1	159901663	159901663	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agcaggggatgagcagctccCgccctacttcttggaaatat	11	11	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	159901663	159901663	C	G	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	missense	c.1301	p.R434P	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	50	0	0	55	28	33.73	-	-	-	G	159901663	C	G	159901663	3	3	107	1	0	0	0	0	1	0	0	0	7659	652	23	3	2282	3	IGSF9	1	159901663	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	4873188	159901663	89348958	16	6501										
SELE	0	genome.wustl.edu	37	chr1	169700791	169700791	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atcttgtcaaggtgccaaaaTaaataactggtgaatctagg	9	6	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	169700791	169700791	T	A	SNP	SELE	ENST00000461085	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SELE	HGNC	ENSG00000007908	8	0	0	12	4	25	-	-	-	A	169700791	T	A	169700791	1	1	107	0	1	0	0	0	0	0	0	0	14101	1421	49	5		5	SELE	1	169700791	RNA	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	9799128	169700791	79549830	17	6502										
IGFN1	0	genome.wustl.edu	37	chr1	201178470	201178470	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggttacaggggtggtttaagGggttctggggaaatggggtt	20	2	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	201178470	201178470	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	silent	c.4449	p.R1483	0.092	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	21	0	0	24	8	25	-	-	-	A	201178470	G	A	201178470	2	1	107	1	0	0	0	0	0	0	0	1	7644	1223	43	4		4	IGFN1	1	201178470	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	31477679	201178470	48072151	18	6503										
PCNXL2	0	genome.wustl.edu	37	chr1	233136225	233136225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	accttcttctcgaaggactgGatggcctcgtagaggactgc	12	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	233136225	233136225	G	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.5154	p.I1718M	1.000	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	28	0	0	21	9	30	-	-	-	C	233136225	G	C	233136225	3	2	107	1	0	0	0	0	1	0	0	0	11665	1164	41	2	1279	2	PCNXL2	1	233136225	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	31957755	233136225	16114396	19	6504										
RYR2	0	genome.wustl.edu	37	chr1	237620028	237620028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	attctgaattctctgtatgaGttgctgggtaagaagcatga	11	5	2	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	237620028	237620028	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1599	p.E533D	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	24	0	0	41	13	24.07	-	-	-	T	237620028	G	T	237620028	3	4	107	1	0	0	0	0	1	0	0	0	13855	1020	36	4	1667	4	RYR2	1	237620028	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	4483803	237620028	11630593	20	6505										
OR6F1	0	genome.wustl.edu	37	chr1	247875785	247875785	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agacagcttgtaaatgatatGgtctgacttctccccagtag	9	9	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	1	247875785	247875785	G	T	SNP	OR6F1	ENST00000302084	human	ensembl	69_37n	-1	known	silent	c.273	p.T91	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	48	0	0	54	13	19.4	-	-	-	T	247875785	G	T	247875785	2	4	107	1	0	0	0	0	0	0	0	1	11274	1335	47	4		4	OR6F1	1	247875785	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	10255757	247875785	1374836	21	6506										
FAM150B	0	genome.wustl.edu	37	chr2	283135	283135	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcctccatgcacactggactGacagccagccgggtaagaag	11	13	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	283135	283135	G	A	SNP	FAM150B	ENST00000401489	human	ensembl	69_37n	-1	novel	missense	c.281	p.S94L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM150B	HGNC	ENSG00000189292	85	0	0	131	15	10.27	-	-	-	A	283135	G	A	283135	3	1	107	1	0	0	0	0	1	0	0	0	5497	1277	45	2	37	2	FAM150B	2	283135	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		283135	242916238	22	6507										
CCDC121	0	genome.wustl.edu	37	chr2	27850034	27850034	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gccgttagtttctgggcttgCtcaattagctgcagtaattc	10	9	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	27850034	27850034	C	G	SNP	CCDC121	ENST00000394775	human	ensembl	69_37n	-1	known	missense	c.1119	p.E373D	0.000	NULL	NULL	-	no_errors	CCDC121	HGNC	ENSG00000176714	83	0	0	96	57	37.25	-	-	-	G	27850034	C	G	27850034	3	3	107	1	0	0	0	0	1	0	0	0	2782	796	28	4	207	4	CCDC121	2	27850034	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	27566899	27850034	215349339	23	6508										
DYNC2LI1	0	genome.wustl.edu	37	chr2	44023934	44023934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tattatggagcatcattaatGgtttgtacatttcttgtcct	7	6	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	44023934	44023934	G	T	SNP	DYNC2LI1	ENST00000260605	human	ensembl	69_37n	1	known	missense	c.654	p.M218I	1.000	NULL	pfam_Dynein_light_int_chain	-	no_errors	DYNC2LI1	HGNC	ENSG00000138036	44	0	0	108	14	11.48	-	-	-	T	44023934	G	T	44023934	3	4	107	1	0	0	0	0	1	0	0	0	4882	1362	47	4	783	4	DYNC2LI1	2	44023934	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	16173900	44023934	199175439	24	6509										
MTIF2	0	genome.wustl.edu	37	chr2	55467276	55467276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgcagctgactgttggataaCattgcctgcattcacattaa	8	9	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	55467276	55467276	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	69_37n	-1	known	missense	c.1741	p.V581I	0.918	pfam_TIF_IF2_dom3,superfamily_TIF_IF2_dom3	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	49	0	0	80	31	27.93	-	-	-	T	55467276	C	T	55467276	3	4	107	1	0	0	0	0	1	0	0	0	10006	478	17	4	454	4	MTIF2	2	55467276	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	11443342	55467276	187732097	25	6510										
DQX1	0	genome.wustl.edu	37	chr2	74751035	74751035	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcaggctgttttttttgtttTgttttgttttttacctcctc	7	7	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	74751035	74751035	T	C	SNP	DQX1	ENST00000495597	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DQX1	HGNC	ENSG00000144045	27	0	0	38	15	28.3	-	-	-	C	74751035	T	C	74751035	1	2	107	0	1	0	0	0	0	0	0	0	4786	1827	63	5		5	DQX1	2	74751035	RNA	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	19283759	74751035	168448338	26	6511										
LRRTM1	0	genome.wustl.edu	37	chr2	80529855	80529855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggtgggctcggccccatcctCgcacaggtggaaggcgtaca	15	13	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	80529855	80529855	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	missense	c.1090	p.E364K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	50	0	0	43	22	33.85	-	-	-	T	80529855	C	T	80529855	3	4	107	1	0	0	0	0	1	0	0	0	9105	893	31	1	482	1	LRRTM1	2	80529855	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	5778820	80529855	162669518	27	6512										
MERTK	0	genome.wustl.edu	37	chr2	112704979	112704979	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttttctccgcaggacttcctCactttactaagcagcctgag	7	13	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	112704979	112704979	C	T	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	missense	c.592	p.H198Y	0.840	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	64	0	0	92	11	10.68	-	-	-	T	112704979	C	T	112704979	3	4	107	1	0	0	0	0	1	0	0	0	9550	826	29	2	606	2	MERTK	2	112704979	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	32175124	112704979	130494394	28	6513										
ARHGEF4	0	genome.wustl.edu	37	chr2	131673316	131673316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acggtgtctcactgcggcccCggggctgaggagggtgaaca	17	11	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	131673316	131673316	C	T	SNP	ARHGEF4	ENST00000409359	human	ensembl	69_37n	1	putative	silent	c.807	p.P269	0.000	NULL	NULL	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	39	0	0	42	5	10.64	-	-	-	T	131673316	C	T	131673316	2	4	107	1	0	0	0	0	0	0	0	1	910	667	23	1		1	ARHGEF4	2	131673316	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	18968337	131673316	111526057	29	6514										
TTN	0	genome.wustl.edu	37	chr2	179410772	179410772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcctccgtcttcctgcggaaGgctccaggctaaagtgcact	10	14	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	179410772	179410772	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.87487	p.L29163F	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	41	0	0	60	23	27.71	-	-	-	A	179410772	G	A	179410772	3	1	107	1	0	0	0	0	1	0	0	0	16832	1000	35	4	12868	4	TTN	2	179410772	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	47737456	179410772	63788601	30	6515										
CCDC141	0	genome.wustl.edu	37	chr2	179718298	179718298	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tttgtcttgcactctgtggaAtattttccaactcttacaac	5	10	3	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	179718298	179718298	A	G	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	silent	c.3114	p.Y1038	1.000	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	82	0	0	89	28	23.93	-	-	-	G	179718298	A	G	179718298	2	3	107	1	0	0	0	0	0	0	0	1	2800	108	4	5		5	CCDC141	2	179718298	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	307526	179718298	63481075	31	6516										
ALS2CR11	0	genome.wustl.edu	37	chr2	202483806	202483806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acttggacctgcccgctgcgGttatcaagtgtgctgaaagg	13	10	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	202483806	202483806	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	silent	c.48	p.N16	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	112	0	0	126	72	36.36	-	-	-	A	202483806	G	A	202483806	2	1	107	1	0	0	0	0	0	0	0	1	552	1252	44	4		4	ALS2CR11	2	202483806	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	22765508	202483806	40715567	32	6517										
PNKD	0	genome.wustl.edu	37	chr2	219209616	219209616	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acaggaggctctggggccggGgccgggccccactggggatg	20	12	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	219209616	219209616	G	C	SNP	PNKD	ENST00000273077	human	ensembl	69_37n	1	known	missense	c.1070	p.G357A	0.606	tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_errors	PNKD	HGNC	ENSG00000127838	47	0	0	52	7	11.86	-	-	-	C	219209616	G	C	219209616	3	2	107	1	0	0	0	0	1	0	0	0	12220	1232	43	4	1473	4	PNKD	2	219209616	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	16725810	219209616	23989757	33	6518										
VIL1	0	genome.wustl.edu	37	chr2	219301895	219301895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acgaggaggagaagaaggccGcagcaaccactgcacaggaa	14	10	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	219301895	219301895	G	A	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	missense	c.2020	p.A674T	0.987	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	52	0	0	46	22	32.35	-	-	-	A	219301895	G	A	219301895	3	1	107	1	0	0	0	0	1	0	0	0	17261	1087	38	1	2082	1	VIL1	2	219301895	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	92279	219301895	23897478	34	6519										
WDR69	0	genome.wustl.edu	37	chr2	228777092	228777092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccgagttatgtcacgttcttGgtaatcatgtttgatgttat	9	6	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	228777092	228777092	G	T	SNP	WDR69	ENST00000373666	human	ensembl	69_37n	1	novel	missense	c.1096	p.G366C	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR69	HGNC	ENSG00000123977	72	0	0	99	42	29.79	-	-	-	T	228777092	G	T	228777092	3	4	107	1	0	0	0	0	1	0	0	0	17416	1363	47	4		4	WDR69	2	228777092	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	9475197	228777092	14422281	35	6520										
PASK	0	genome.wustl.edu	37	chr2	242076635	242076635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tttaagctcagagggaaggtGgtaccgtccctggctcttcc	12	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	2	242076635	242076635	G	C	SNP	PASK	ENST00000433589	human	ensembl	69_37n	-1	novel	missense	c.365	p.P122R	0.966	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PASK	HGNC	ENSG00000115687	64	0	0	64	36	36	-	-	-	C	242076635	G	C	242076635	3	2	107	1	0	0	0	0	1	0	0	0	11545	1335	47	4	3098	4	PASK	2	242076635	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	13299543	242076635	1122738	36	6521										
CHL1	0	genome.wustl.edu	37	chr3	402080	402080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	caaatgtccatggaactatcCttgccaatgccaatattgat	6	10	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	402080	402080	C	T	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	missense	c.1279	p.L427F	0.995	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	98	0	0	138	29	17.37	-	-	-	T	402080	C	T	402080	3	4	107	1	0	0	0	0	1	0	0	0	3378	681	24	4	1317	4	CHL1	3	402080	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		402080	197620350	37	6522										
TRNT1	0	genome.wustl.edu	37	chr3	3189339	3189339	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aggaaagatttaattaaagcAacagatagttcagacccatt	7	6	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	3189339	3189339	A	G	SNP	TRNT1	ENST00000251607	human	ensembl	69_37n	1	known	silent	c.1008	p.A336	0.015	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756	39	0	0	50	11	18.03	-	-	-	G	3189339	A	G	3189339	2	3	107	1	0	0	0	0	0	0	0	1	16669	117	5	5		5	TRNT1	3	3189339	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	2787259	3189339	194833091	38	6523										
RPUSD3	0	genome.wustl.edu	37	chr3	9880852	9880852	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcacctgtagttgactggagAacactgggcaacaggaaagc	13	9	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	9880852	9880852	A	T	SNP	RPUSD3	ENST00000383820	human	ensembl	69_37n	-1	known	missense	c.728	p.F243Y	0.826	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD3	HGNC	ENSG00000156990	78	0	0	113	25	18.12	-	-	-	T	9880852	A	T	9880852	3	4	107	1	0	0	0	0	1	0	0	0	13754	246	9	5	335	5	RPUSD3	3	9880852	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	6691513	9880852	188141578	39	6524										
LTF	0	genome.wustl.edu	37	chr3	46488803	46488803	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgctaactccacttactgtaGttctctgccaggacaggcac	8	13	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	46488803	46488803	G	C	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	missense	c.1299	p.N433K	0.008	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	75	0	0	69	36	34.29	-	-	-	C	46488803	G	C	46488803	3	2	107	1	0	0	0	0	1	0	0	0	9145	1020	36	4	865	4	LTF	3	46488803	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	36607951	46488803	151533627	40	6525										
SNTN	0	genome.wustl.edu	37	chr3	63645407	63645407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttcttctctcctagctctgaGgaagtgctcagatctggaaa	9	10	5	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	63645407	63645407	G	A	SNP	SNTN	ENST00000343837	human	ensembl	69_37n	1	known	missense	c.152	p.R51K	0.034	NULL	NULL	-	no_errors	SNTN	HGNC	ENSG00000188817	9	0	0	20	5	20	-	-	-	A	63645407	G	A	63645407	3	1	107	1	0	0	0	0	1	0	0	0	14965	1000	35	4	162	4	SNTN	3	63645407	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	17156604	63645407	134377023	41	6526										
MAGI1	0	genome.wustl.edu	37	chr3	65350532	65350532	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	accagtcatgtctgaccttgTctcctgggtcccttgctgag	10	13	3	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	65350532	65350532	T	C	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3286	p.T1096A	0.998	superfamily_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	31	0	0	44	11	20	-	-	-	C	65350532	T	C	65350532	3	2	107	1	0	0	0	0	1	0	0	0	9261	1667	58	5	1265	5	MAGI1	3	65350532	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	1705125	65350532	132671898	42	6527										
PDZRN3	0	genome.wustl.edu	37	chr3	73651605	73651605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cttcactggatgatccatcgTggttatcctttgggttaaaa	9	8	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	73651605	73651605	T	C	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.818	p.H273R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	49	0	0	61	14	18.42	-	-	-	C	73651605	T	C	73651605	3	2	107	1	0	0	0	0	1	0	0	0	11782	1696	59	5	2414	5	PDZRN3	3	73651605	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	8301073	73651605	124370825	43	6528										
CHST2	0	genome.wustl.edu	37	chr3	142840143	142840143	+	Missense_Mutation	SNP	A	A	T													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gggcaccgggggcgtcggggAcaagcggcagctggtgtacg							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	142840143	142840143	A	T	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	missense	c.485	p.D162V	0.827	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	40	0	0	42	20	32.26	-	-	-	T	142840143	A	T	142840143	3	4	107	1	0	0	0	0	1	0	0	0	3433	275	10	5	487	5	CHST2	3	142840143	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	69188538	142840143	55182287	44	6529	49	2								
CHST2	0	genome.wustl.edu	37	chr3	142840144	142840144	+	Missense_Mutation	SNP	C	C	A													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggcaccgggggcgtcggggaCaagcggcagctggtgtacgt							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	142840144	142840144	C	A	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	missense	c.486	p.D162E	0.929	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	40	0	0	41	19	31.67	-	-	-	A	142840144	C	A	142840144	3	1	107	1	0	0	0	0	1	0	0	0	3433	477	17	4	488	4	CHST2	3	142840144	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1	142840144	55182286	45	6530	49	2								
IGSF10	0	genome.wustl.edu	37	chr3	151155222	151155222	+	Frame_Shift_Del	DEL	C	C	-													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtccattggaaaatcgtgtgCcatttggtaaaatccagatt							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	151155222	151155222	C	-	DEL	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	frame_shift_del	c.7127	p.G2376fs	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	18	0	0	19	6	24	-	-	-	-	151155222	C	-	151155222	7	5	107	1	0	1	0	1	0	0	0	0	7651	739	26	0	748	0	IGSF10	3	151155222	Frame_Shift_Del	DEL	C	TCGA-A2-A3Y0-01A-11D-A23C-09	8315078	151155222	46867208	46	6531										
UBXN7	0	genome.wustl.edu	37	chr3	196088786	196088786	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ataccgcaacatcagctgtgCttttggtcctaaaggaaggg	11	9	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	3	196088786	196088786	C	G	SNP	UBXN7	ENST00000296328	human	ensembl	69_37n	-1	known	missense	c.1237	p.A413P	1.000	pfam_UBX,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960	41	0	0	60	13	17.81	-	-	-	G	196088786	C	G	196088786	3	3	107	1	0	0	0	0	1	0	0	0	17015	797	28	4	240	4	UBXN7	3	196088786	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	44933564	196088786	1933644	47	6532										
GABRA4	0	genome.wustl.edu	37	chr4	46967110	46967110	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtgaaatagttgacagcagcAaactcgataagggccgaaaa	11	7	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	46967110	46967110	A	C	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1011	p.F337L	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	55	0	0	84	20	19.23	-	-	-	C	46967110	A	C	46967110	3	2	107	1	0	0	0	0	1	0	0	0	6212	127	5	5	661	5	GABRA4	4	46967110	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09		46967110	144187166	48	6533										
UGT2B4	0	genome.wustl.edu	37	chr4	70351053	70351053	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atcaggttgatctgcaaacaAtggaacgcccaccataggga	10	10	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	70351053	70351053	A	G	SNP	UGT2B4	ENST00000305107	human	ensembl	69_37n	-1	known	silent	c.1183	p.L395	0.555	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	129	0	0	172	37	17.7	-	-	-	G	70351053	A	G	70351053	2	3	107	1	0	0	0	0	0	0	0	1	17058	98	4	5		5	UGT2B4	4	70351053	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	23383943	70351053	120803223	49	6534										
SMR3B	0	genome.wustl.edu	37	chr4	71255410	71255410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtcaaagaggccccaggggaCcatatccacctggaccgctg	12	14	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	71255410	71255410	C	T	SNP	SMR3B	ENST00000304915	human	ensembl	69_37n	1	known	missense	c.85	p.P29S	0.005	NULL	NULL	-	no_errors	SMR3B	HGNC	ENSG00000171201	58	0	0	62	29	31.87	-	-	-	T	71255410	C	T	71255410	3	4	107	1	0	0	0	0	1	0	0	0	14901	507	18	4	91	4	SMR3B	4	71255410	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	904357	71255410	119898866	50	6535										
AMBN	0	genome.wustl.edu	37	chr4	71472137	71472137	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cccagctttccttacagagcTagaacctgctccccacgcag	7	17	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	71472137	71472137	T	C	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.1034	p.L345P	0.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	31	0	0	24	5	17.24	-	-	-	C	71472137	T	C	71472137	3	2	107	1	0	0	0	0	1	0	0	0	563	1522	53	5	1084	5	AMBN	4	71472137	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	216727	71472137	119682139	51	6536										
ANKRD17	0	genome.wustl.edu	37	chr4	73962844	73962844	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aattactcaccttcttacaaCttctttccatccttcttccc	0	16	4	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	73962844	73962844	C	A	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.5167	p.V1723F	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	94	0	0	130	26	16.67	-	-	-	A	73962844	C	A	73962844	3	1	107	1	0	0	0	0	1	0	0	0	646	565	20	4	2676	4	ANKRD17	4	73962844	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	2490707	73962844	117191432	52	6537										
GSTCD	0	genome.wustl.edu	37	chr4	106746941	106746941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aaatatggaatattttactgGgatgtttaatattggagtaa	9	1	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	106746941	106746941	G	A	SNP	GSTCD	ENST00000360505	human	ensembl	69_37n	1	known	missense	c.1514	p.G505E	1.000	NULL	pfam_rRNA_ssu_MeTfrase_G,pfam_Small_mtfrase_dom,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GSTCD	HGNC	ENSG00000138780	23	0	0	32	12	27.27	-	-	-	A	106746941	G	A	106746941	3	1	107	1	0	0	0	0	1	0	0	0	6886	1232	43	4	1540	4	GSTCD	4	106746941	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	32784097	106746941	84407335	53	6538										
LRBA	0	genome.wustl.edu	37	chr4	151656509	151656509	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agatgatccttcattgtctgGctaagcaacctgtaagaaat	8	8	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	4	151656509	151656509	G	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.5655	p.S1885R	1.000	pfam_DUF1088	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	80	0	0	95	26	21.49	-	-	-	C	151656509	G	C	151656509	3	2	107	1	0	0	0	0	1	0	0	0	8997	1194	42	4	3028	4	LRBA	4	151656509	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	44909568	151656509	39497767	54	6539										
HEATR7B2	0	genome.wustl.edu	37	chr5	41018468	41018468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tatcatttgtcagcactttcGcagtgatctggaaggctctt	9	9	4	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	41018468	41018468	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.2738	p.A913V	0.016	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	50	0	0	31	28	47.46	-	-	-	A	41018468	G	A	41018468	3	1	107	1	0	0	0	0	1	0	0	0	7086	1087	38	1	2083	1	HEATR7B2	5	41018468	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		41018468	139896792	55	6540										
MAP3K1	0	genome.wustl.edu	37	chr5	56160701	56160701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgcagcagatagggcctaaCtctttcctgattggaggaga	12	9	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	56160701	56160701	C	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.975	p.N325K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	49	0	0	55	7	11.29	-	-	-	A	56160701	C	A	56160701	3	1	107	1	0	0	0	0	1	0	0	0	9314	564	20	4	989	4	MAP3K1	5	56160701	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	15142233	56160701	124754559	56	6541										
BDP1	0	genome.wustl.edu	37	chr5	70754468	70754468	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tagatcttcctctactgtttCacagagaagaaagcgaatat	7	8	3	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	70754468	70754468	C	T	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.275	p.S92L	0.897	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	63	0	0	49	8	14.04	-	-	-	T	70754468	C	T	70754468	3	4	107	1	0	0	0	0	1	0	0	0	1399	838	29	2	281	2	BDP1	5	70754468	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	14593767	70754468	110160792	57	6542										
TSSK1B	0	genome.wustl.edu	37	chr5	112769590	112769590	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtgcctggggctgtgcctctCcctcaggctccagcttggtg	14	14	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	112769590	112769590	C	G	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	missense	c.947	p.G316A	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	40	0	0	54	8	12.7	-	-	-	G	112769590	C	G	112769590	3	3	107	1	0	0	0	0	1	0	0	0	16764	855	30	2	160	2	TSSK1B	5	112769590	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	42015122	112769590	68145670	58	6543										
GFRA3	0	genome.wustl.edu	37	chr5	137589525	137589525	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgcaggttgccactgcctcgGcaggtgcagcttaaggcaac	13	12	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	137589525	137589525	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	69_37n	-1	known	silent	c.954	p.C318	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	48	0	0	36	21	36.21	-	-	-	A	137589525	G	A	137589525	2	1	107	1	0	0	0	0	0	0	0	1	6401	1195	42	4		4	GFRA3	5	137589525	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	24819935	137589525	43325735	59	6544										
CDC25C	0	genome.wustl.edu	37	chr5	137654919	137654919	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acactttacctttgcttcttGatctttcagggaaaactcca	5	11	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	137654919	137654919	G	C	SNP	CDC25C	ENST00000323760	human	ensembl	69_37n	-1	known	missense	c.604	p.Q202E	1.000	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402	90	0	0	123	45	26.79	-	-	-	C	137654919	G	C	137654919	3	2	107	1	0	0	0	0	1	0	0	0	3093	1299	45	2	849	2	CDC25C	5	137654919	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	65394	137654919	43260341	60	6545										
LRRTM2	0	genome.wustl.edu	37	chr5	138210118	138210118	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccctgagagtcgcagtagaaGagcagcttctcgcagcggca	13	12	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	138210118	138210118	G	C	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	silent	c.132	p.L44	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	32	0	0	28	5	15.15	-	-	-	C	138210118	G	C	138210118	2	2	107	1	0	0	0	0	0	0	0	1	9106	929	33	2		2	LRRTM2	5	138210118	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	555199	138210118	42705142	61	6546										
PCDHA6	0	genome.wustl.edu	37	chr5	140209511	140209511	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtggctttcgtatgagctgcAgcccccggcaagcagcgctc	13	14	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	140209511	140209511	A	C	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.1835	p.Q612P	0.010	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	121	0	0	151	36	19.25	-	-	-	C	140209511	A	C	140209511	3	2	107	1	0	0	0	0	1	0	0	0	11601	188	7	5	1837	5	PCDHA6	5	140209511	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	1999393	140209511	40705749	62	6547										
CAMK2A	0	genome.wustl.edu	37	chr5	149669201	149669201	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtggccatcctggcgctgggCaggcaggtgaggcttgggac	19	10	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	149669201	149669201	C	A	SNP	CAMK2A	ENST00000507995	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CAMK2A	HGNC	ENSG00000070808	90	0	0	100	42	29.58	-	-	-	A	149669201	C	A	149669201	1	1	107	0	1	0	0	0	0	0	0	0	2624	725	25	4		4	CAMK2A	5	149669201	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	9459690	149669201	31246059	63	6548										
EBF1	0	genome.wustl.edu	37	chr5	158140136	158140136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gggcctcggcaatgtcggccGctctcttcagaatgatttcc	11	13	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	158140136	158140136	G	A	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	missense	c.1211	p.A404V	1.000	superfamily_HLH_DNA-bd	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	89	0	0	88	10	10.2	-	-	-	A	158140136	G	A	158140136	3	1	107	1	0	0	0	0	1	0	0	0	4915	1087	38	1	580	1	EBF1	5	158140136	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	8470935	158140136	22775124	64	6549										
RNF145	0	genome.wustl.edu	37	chr5	158630600	158630600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcagggccacatttaacactGcctccagtttctcctttgca	6	14	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	158630600	158630600	G	A	SNP	RNF145	ENST00000274542	human	ensembl	69_37n	-1	known	missense	c.110	p.A37V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860	47	0	0	40	30	41.1	-	-	-	A	158630600	G	A	158630600	3	1	107	1	0	0	0	0	1	0	0	0	13533	1319	46	4	2005	4	RNF145	5	158630600	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	490464	158630600	22284660	65	6550										
FABP6	0	genome.wustl.edu	37	chr5	159640763	159640763	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gttctgagagctgtgttgtcTgcgtgcacatgggtgagccg	16	8	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	159640763	159640763	T	G	SNP	FABP6	ENST00000393980	human	ensembl	69_37n	1	known	silent	c.72	p.S24	0.000	NULL	superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP6	HGNC	ENSG00000170231	40	0	0	60	16	21.05	-	-	-	G	159640763	T	G	159640763	2	3	107	1	0	0	0	0	0	0	0	1	5401	1567	55	5		5	FABP6	5	159640763	Silent	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	1010163	159640763	21274497	66	6551										
SQSTM1	0	genome.wustl.edu	37	chr5	179260248	179260248	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtccgaggggcgccctgaggCaagcctgtgcccctcccgcc	14	18	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	5	179260248	179260248	C	G	SNP	SQSTM1	ENST00000389805	human	ensembl	69_37n	1	known	splice_site	c.969+2	e6+2	0.965	-	-	-	no_errors	SQSTM1	HGNC	ENSG00000161011	13	0	0	9	6	40	-	-	-	G	179260248	C	G	179260248	5	3	107	1	0	0	0	0	0	0	1	0	15221	724	25	4	993	4	SQSTM1	5	179260248	Splice_Site	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	19619485	179260248	1655012	67	6552										
FAM65B	0	genome.wustl.edu	37	chr6	24843451	24843451	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cagcacctgaggactgtcggCggcaagcctcagatggggcc	15	13	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	24843451	24843451	C	A	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.1559	p.R520L	0.006	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	73	0	0	67	29	30.21	-	-	-	A	24843451	C	A	24843451	3	1	107	1	0	0	0	0	1	0	0	0	5645	768	27	3	1697	3	FAM65B	6	24843451	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		24843451	146271616	68	6553										
SLC39A7	0	genome.wustl.edu	37	chr6	33169360	33169360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tggacatgaccatgagcataGccatggaggctatggggagt	15	7	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	33169360	33169360	G	C	SNP	SLC39A7	ENST00000374675	human	ensembl	69_37n	1	known	missense	c.338	p.S113T	1.000	prints_Kininogen	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473	61	0	0	89	10	10.1	-	-	-	C	33169360	G	C	33169360	3	2	107	1	0	0	0	0	1	0	0	0	14712	971	34	4	340	4	SLC39A7	6	33169360	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	8325909	33169360	137945707	69	6554										
USP49	0	genome.wustl.edu	37	chr6	41764309	41764309	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tctgccttcatcattgttgcTggactgcacctgagcttgga	10	11	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	41764309	41764309	T	G	SNP	USP49	ENST00000373009	human	ensembl	69_37n	-1	known	missense	c.2029	p.S677R	0.999	NULL	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP49	HGNC	ENSG00000164663	74	0	0	108	49	31.21	-	-	-	G	41764309	T	G	41764309	3	3	107	1	0	0	0	0	1	0	0	0	17177	1595	55	5		5	USP49	6	41764309	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	8594949	41764309	129350758	70	6555										
HSP90AB1	0	genome.wustl.edu	37	chr6	44220997	44220997	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gaggccgacaagaatgataaGgcagttaaggacctggtggt	15	6	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	44220997	44220997	G	A	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	silent	c.1947	p.K649	1.000	pfam_Hsp90,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	59	0	0	123	17	12.14	-	-	-	A	44220997	G	A	44220997	2	1	107	1	0	0	0	0	0	0	0	1	7455	991	35	4		4	HSP90AB1	6	44220997	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	2456688	44220997	126894070	71	6556										
COL12A1	0	genome.wustl.edu	37	chr6	75833729	75833729	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tctgcacaaaaacagtgacaCcataatcagtgtctggtgaa	8	9	3	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	75833729	75833729	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.6806	p.G2269V	0.008	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	82	0	0	78	31	28.44	-	-	-	A	75833729	C	A	75833729	3	1	107	1	0	0	0	0	1	0	0	0	3699	507	18	4	2485	4	COL12A1	6	75833729	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	31612732	75833729	95281338	72	6557										
FOXO3	0	genome.wustl.edu	37	chr6	108985251	108985251	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcccagccatcgcccactggGggactcatgcagcggagctc	12	16	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	108985251	108985251	G	A	SNP	FOXO3	ENST00000343882	human	ensembl	69_37n	1	known	silent	c.1215	p.G405	0.003	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689	74	0	0	70	34	32.69	-	-	-	A	108985251	G	A	108985251	2	1	107	1	0	0	0	0	0	0	0	1	6072	1219	43	4		4	FOXO3	6	108985251	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	33151522	108985251	62129816	73	6558										
AHI1	0	genome.wustl.edu	37	chr6	135611584	135611584	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tattagagtgacttttctgcCtgcttgcttgttcttcctca	7	10	3	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	135611584	135611584	C	G	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.3565	p.G1189R	0.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	152	0	0	140	91	39.39	-	-	-	G	135611584	C	G	135611584	3	3	107	1	0	0	0	0	1	0	0	0	413	681	24	4	33	4	AHI1	6	135611584	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	26626333	135611584	35503483	74	6559										
SYTL3	0	genome.wustl.edu	37	chr6	159084348	159084348	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctcaaggagttagaacgcgaGgccattctccaggtcctgta	11	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	159084348	159084348	G	A	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	silent	c.48	p.E16	0.005	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	44	0	0	41	25	37.88	-	-	-	A	159084348	G	A	159084348	2	1	107	1	0	0	0	0	0	0	0	1	15576	991	35	4		4	SYTL3	6	159084348	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	23472764	159084348	12030719	75	6560										
C6orf118	0	genome.wustl.edu	37	chr6	165693507	165693507	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	catgctacatacatggaagtTaagaatttccactggccatt	7	9	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	6	165693507	165693507	T	A	SNP	C6orf118	ENST00000494696	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6orf118	HGNC	ENSG00000112539	42	0	0	55	11	16.42	-	-	-	A	165693507	T	A	165693507	1	1	107	0	1	0	0	0	0	0	0	0	2344	1769	61	5		5	C6orf118	6	165693507	RNA	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	6609159	165693507	5421560	76	6561										
AMZ1	0	genome.wustl.edu	37	chr7	2748833	2748833	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcccccctgcaggacaggggCtgggccctgtgcttcagtgc	15	15	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	2748833	2748833	C	A	SNP	AMZ1	ENST00000312371	human	ensembl	69_37n	1	known	silent	c.726	p.G242	0.004	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945	21	0	0	12	6	33.33	-	-	-	A	2748833	C	A	2748833	2	1	107	1	0	0	0	0	0	0	0	1	596	784	28	4		4	AMZ1	7	2748833	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		2748833	156389830	77	6562										
GPNMB	0	genome.wustl.edu	37	chr7	23313462	23313462	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aactttacaaaattatgtcaActtaattttaacatgatagt	3	5	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	23313462	23313462	A	G	SNP	GPNMB	ENST00000470994	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GPNMB	HGNC	ENSG00000136235	21	0	0	15	3	16.67	-	-	-	G	23313462	A	G	23313462	1	3	107	0	1	0	0	0	0	0	0	0	6670	58	2	5		5	GPNMB	7	23313462	RNA	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	20564629	23313462	135825201	78	6563										
CCDC146	0	genome.wustl.edu	37	chr7	76909802	76909802	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgttaccatcagagagagcaTgcaaaacgatgtgcgcaaaa	10	8	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	76909802	76909802	T	C	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	missense	c.1751	p.M584T	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	34	0	0	22	13	37.14	-	-	-	C	76909802	T	C	76909802	3	2	107	1	0	0	0	0	1	0	0	0	2805	1464	51	5	1801	5	CCDC146	7	76909802	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	53596340	76909802	82228861	79	6564										
TRIP6	0	genome.wustl.edu	37	chr7	100470343	100470343	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttgctctggatcgaagttttCacattggctgttacaagtgc	10	8	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	100470343	100470343	C	T	SNP	TRIP6	ENST00000200457	human	ensembl	69_37n	1	known	missense	c.1276	p.H426Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077	52	0	0	72	9	11.11	-	-	-	T	100470343	C	T	100470343	3	4	107	1	0	0	0	0	1	0	0	0	16655	826	29	2	1306	2	TRIP6	7	100470343	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	23560541	100470343	58668320	80	6565										
RNF148	0	genome.wustl.edu	37	chr7	122342506	122342506	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gttcgatgagggccagccatGagtctgcctgtttgggcctg	15	10	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	122342506	122342506	G	T	SNP	RNF148	ENST00000434824	human	ensembl	69_37n	-1	known	nonsense	c.299	p.S100*	0.434	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	93	0	0	136	18	11.69	-	-	-	T	122342506	G	T	122342506	4	4	107	1	0	0	0	0	0	1	0	0	13535	1294	45	2	622	2	RNF148	7	122342506	Nonsense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	21872163	122342506	36796157	81	6566										
CPA2	0	genome.wustl.edu	37	chr7	129913559	129913559	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tttaaagaagagttctggtcGtatgcagaaggatgatggac	13	4	1	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	129913559	129913559	G	C	SNP	CPA2	ENST00000416698	human	ensembl	69_37n	1	known	missense	c.494	p.R165P	0.001	pfam_Peptidase_M14	pfam_Prot_inh_M14A,pfam_Peptidase_M14,superfamily_Prot_inh_propept	-	no_errors	CPA2	HGNC	ENSG00000158516	22	0	0	17	9	34.62	-	-	-	C	129913559	G	C	129913559	3	2	107	1	0	0	0	0	1	0	0	0	3820	1160	40	3		3	CPA2	7	129913559	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	7571053	129913559	29225104	82	6567										
KIAA1549	0	genome.wustl.edu	37	chr7	138601731	138601731	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gctggttgtgctcacttccgTggaggtgttcagtggcacct	14	10	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	138601731	138601731	T	C	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.2641	p.T881A	0.002	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	77	0	0	101	29	22.14	-	-	-	C	138601731	T	C	138601731	3	2	107	1	0	0	0	0	1	0	0	0	8296	1696	59	5	3287	5	KIAA1549	7	138601731	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	8688172	138601731	20536932	83	6568										
OR2A14	0	genome.wustl.edu	37	chr7	143826250	143826250	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acagacatcaccttgccgcgAttccaggttggtccagcact	9	14	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	7	143826250	143826250	A	T	SNP	OR2A14	ENST00000408899	human	ensembl	69_37n	1	known	silent	c.45	p.R15	0.203	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938	96	0	0	191	51	21.07	-	-	-	T	143826250	A	T	143826250	2	4	107	1	0	0	0	0	0	0	0	1	11049	320	12	5		5	OR2A14	7	143826250	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	5224519	143826250	15312413	84	6569										
PENK	0	genome.wustl.edu	37	chr8	57358343	57358343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcggaaactctgtctcacaaGgtgcgcaacactcgccgcgc	11	15	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	57358343	57358343	G	A	SNP	PENK	ENST00000518770	human	ensembl	69_37n	-1	putative	missense	c.170	p.P57L	0.001	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A	-	no_errors	PENK	HGNC	ENSG00000181195	96	0	0	120	42	25.77	-	-	-	A	57358343	G	A	57358343	3	1	107	1	0	0	0	0	1	0	0	0	11800	1015	35	4		4	PENK	8	57358343	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		57358343	89005679	85	6570										
VCPIP1	0	genome.wustl.edu	37	chr8	67547063	67547063	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tccattgaagcctgaatagaAgaaaccatttcctgcaattt	6	9	0	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	67547063	67547063	A	C	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	silent	c.3342	p.S1114	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	46	0	0	49	31	38.75	-	-	-	C	67547063	A	C	67547063	2	2	107	1	0	0	0	0	0	0	0	1	17238	59	3	5		5	VCPIP1	8	67547063	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	10188720	67547063	78816959	86	6571										
SULF1	0	genome.wustl.edu	37	chr8	70571438	70571438	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgttcaccatggccaccgcaGaacaccgaagtaattccagc	8	14	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	70571438	70571438	G	C	SNP	SULF1	ENST00000521946	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SULF1	HGNC	ENSG00000137573	25	0	0	37	14	27.45	-	-	-	C	70571438	G	C	70571438	1	2	107	0	1	0	0	0	0	0	0	0	15461	957	33	2		2	SULF1	8	70571438	RNA	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	3024375	70571438	75792584	87	6572										
SLC25A32	0	genome.wustl.edu	37	chr8	104419955	104419955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtccatcaagtttccaaatgGtagtcaagcaatgtaaaatt	7	7	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	104419955	104419955	G	T	SNP	SLC25A32	ENST00000297578	human	ensembl	69_37n	-1	known	missense	c.212	p.T71N	0.990	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A32	HGNC	ENSG00000164933	38	0	0	66	29	30.53	-	-	-	T	104419955	G	T	104419955	3	4	107	1	0	0	0	0	1	0	0	0	14585	1261	44	4	759	4	SLC25A32	8	104419955	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	33848517	104419955	41944067	88	6573										
COL14A1	0	genome.wustl.edu	37	chr8	121379445	121379445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aaggagaaaaaggaaatccaGgcgttggaacccaaggtcca	12	8	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	121379445	121379445	G	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.5113	p.G1705C	1.000	pfam_Collagen	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	19	0	0	26	18	40.91	-	-	-	T	121379445	G	T	121379445	3	4	107	1	0	0	0	0	1	0	0	0	3701	1000	35	4	5291	4	COL14A1	8	121379445	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	16959490	121379445	24984577	89	6574										
SNTB1	0	genome.wustl.edu	37	chr8	121583404	121583404	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgtgagaacaaggctatgtaCgagggtaaattttattttca	10	4	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	121583404	121583404	C	T	SNP	SNTB1	ENST00000519177	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNTB1	HGNC	ENSG00000172164	12	0	0	20	8	28.57	-	-	-	T	121583404	C	T	121583404	1	4	107	0	1	0	0	0	0	0	0	0	14961	551	19	1		1	SNTB1	8	121583404	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	203959	121583404	24780618	90	6575										
MAPK15	0	genome.wustl.edu	37	chr8	144803948	144803948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccaagcgggaggggagctgcGccctccctgacctcccaggc	14	17	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	8	144803948	144803948	G	A	SNP	MAPK15	ENST00000338033	human	ensembl	69_37n	1	known	silent	c.1356	p.A452	0.213	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085	35	0	0	77	15	16.13	-	-	-	A	144803948	G	A	144803948	2	1	107	1	0	0	0	0	0	0	0	1	9348	1074	38	1		1	MAPK15	8	144803948	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	23220544	144803948	1560074	91	6576										
DCAF12	0	genome.wustl.edu	37	chr9	34125207	34125207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgacttcccggttcttcaaGtagtatactaaggatctctt	7	10	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	34125207	34125207	G	A	SNP	DCAF12	ENST00000361264	human	ensembl	69_37n	-1	known	silent	c.147	p.Y49	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	48	0	0	48	33	40.74	-	-	-	A	34125207	G	A	34125207	2	1	107	1	0	0	0	0	0	0	0	1	4295	1024	36	4		4	DCAF12	9	34125207	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		34125207	107088224	92	6577										
C9orf131	0	genome.wustl.edu	37	chr9	35044014	35044014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcaaagtagagaaaatatttGggtccctgcagacccagttt	10	8	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	35044014	35044014	G	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.1388	p.W463S	0.001	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	24	0	0	26	8	23.53	-	-	-	C	35044014	G	C	35044014	3	2	107	1	0	0	0	0	1	0	0	0	2482	1357	47	4	1410	4	C9orf131	9	35044014	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	918807	35044014	106169417	93	6578										
TLN1	0	genome.wustl.edu	37	chr9	35700198	35700198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggatttctaccttgcaagccCgaagcatatctgcaatagca	8	11	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	35700198	35700198	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.6650	p.R2217Q	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	66	0	0	92	28	23.33	-	-	-	T	35700198	C	T	35700198	3	4	107	1	0	0	0	0	1	0	0	0	16042	652	23	1	1011	1	TLN1	9	35700198	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	656184	35700198	105513233	94	6579										
DCAF10	0	genome.wustl.edu	37	chr9	37854783	37854784	+	Frame_Shift_Ins	INS	-	-	T													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtttctcctgtaggtatacaINSgaagatgggtgtccacataa							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	37854783	37854784	-	T	INS	DCAF10	ENST00000377724	human	ensembl	69_37n	1	known	frame_shift_ins	c.858_859	p.E286fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF10	HGNC	ENSG00000122741	43	0	0	46	10	17.86	-	-	-	T	37854784	-	T	37854783	7	5	107	1	0	1	1	0	0	0	0	0	4293	175	7	0	872	0	DCAF10	9	37854783	Frame_Shift_Ins	INS	-	TCGA-A2-A3Y0-01A-11D-A23C-09	2154585	37854783	103358648	95	6580	50	3								
DCAF10	0	genome.wustl.edu	37	chr9	37854784	37854785	+	Frame_Shift_Ins	INS	-	-	GT													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tttctcctgtaggtatacagINSaagatgggtgtccacataag							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	37854784	37854785	-	GT	INS	DCAF10	ENST00000377724	human	ensembl	69_37n	1	known	frame_shift_ins	c.859_860	p.E287fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF10	HGNC	ENSG00000122741	44	0	0	45	10	18.18	-	-	-	GT	37854785	-	GT	37854784	7	5	107	1	0	1	1	0	0	0	0	0	4293	943	33	0	873	0	DCAF10	9	37854784	Frame_Shift_Ins	INS	-	TCGA-A2-A3Y0-01A-11D-A23C-09	1	37854784	103358647	96	6581	50	3								
DCAF10	0	genome.wustl.edu	37	chr9	37854785	37854786	+	Frame_Shift_Ins	INS	-	-	T													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttctcctgtaggtatacagaINSagatgggtgtccacataaga							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	37854785	37854786	-	T	INS	DCAF10	ENST00000377724	human	ensembl	69_37n	1	known	frame_shift_ins	c.860_861	p.E287fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF10	HGNC	ENSG00000122741	45	0	0	45	10	18.18	-	-	-	T	37854786	-	T	37854785	7	5	107	1	0	1	1	0	0	0	0	0	4293	246	9	0	874	0	DCAF10	9	37854785	Frame_Shift_Ins	INS	-	TCGA-A2-A3Y0-01A-11D-A23C-09	1	37854785	103358646	97	6582	50	3								
TDRD7	0	genome.wustl.edu	37	chr9	100235835	100235835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctctgatgggacactctactGccaggtgccttgtaagggtc	12	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	100235835	100235835	G	T	SNP	TDRD7	ENST00000355295	human	ensembl	69_37n	1	known	missense	c.2006	p.C669F	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	78	0	0	53	63	54.31	-	-	-	T	100235835	G	T	100235835	3	4	107	1	0	0	0	0	1	0	0	0	15830	1319	46	4	2044	4	TDRD7	9	100235835	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	62381050	100235835	40977596	98	6583										
PTGES2	0	genome.wustl.edu	37	chr9	130883327	130883327	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggacaaggggcagaatgatcCtgcccccaaccagtatcgcc	11	14	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	130883327	130883327	C	T	SNP	PTGES2	ENST00000476811	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PTGES2	HGNC	ENSG00000148334	35	0	0	40	10	20	-	-	-	T	130883327	C	T	130883327	1	4	107	0	1	0	0	0	0	0	0	0	12828	696	24	4		4	PTGES2	9	130883327	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	30647492	130883327	10330104	99	6584										
KIAA1984	0	genome.wustl.edu	37	chr9	139694614	139694614	+	Frame_Shift_Del	DEL	T	T	-													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cagcaaggaggagctgcggcTgctgcaggtggagaggcggg							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	9	139694614	139694614	T	-	DEL	KIAA1984	ENST00000338005	human	ensembl	69_37n	1	known	frame_shift_del	c.431	p.L144fs	0.028	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	9	0	0	5	3	37.5	-	-	-	-	139694614	T	-	139694614	7	5	107	1	0	1	0	1	0	0	0	0	8318	1580	55	0	445	0	KIAA1984	9	139694614	Frame_Shift_Del	DEL	T	TCGA-A2-A3Y0-01A-11D-A23C-09	8811287	139694614	1518817	100	6585										
ANKRD30A	0	genome.wustl.edu	37	chr10	37508106	37508106	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccctaaaactgaaagaggaaTcattaactaaaagggcatct	7	8	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	10	37508106	37508106	T	C	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	missense	c.3298	p.S1100P	0.133	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	47	0	0	60	24	28.57	-	-	-	C	37508106	T	C	37508106	3	2	107	1	0	0	0	0	1	0	0	0	658	1435	50	5	3432	5	ANKRD30A	10	37508106	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09		37508106	98026641	101	6586										
ACTR1A	0	genome.wustl.edu	37	chr10	104239003	104239003	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agctgacgtgtctatcggaaCgactttatttcagtacactg	9	9	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	10	104239003	104239003	C	T	SNP	ACTR1A	ENST00000470322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ACTR1A	HGNC	ENSG00000138107	21	0	0	15	4	21.05	-	-	-	T	104239003	C	T	104239003	1	4	107	0	1	0	0	0	0	0	0	0	209	551	19	1		1	ACTR1A	10	104239003	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	66730897	104239003	31295744	102	6587										
PRDX3	0	genome.wustl.edu	37	chr10	120928938	120928938	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcccttttaggtctttaattCtccttttaataaaatattta	2	7	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	10	120928938	120928938	C	T	SNP	PRDX3	ENST00000494433	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PRDX3	HGNC	ENSG00000165672	26	0	0	21	5	19.23	-	-	-	T	120928938	C	T	120928938	1	4	107	0	1	0	0	0	0	0	0	0	12547	928	32	2		2	PRDX3	10	120928938	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	16689935	120928938	14605809	103	6588										
LRRC27	0	genome.wustl.edu	37	chr10	134158188	134158188	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gatttatgacaaatcacattAacgttgaagttacagctttt	6	6	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	10	134158188	134158188	A	G	SNP	LRRC27	ENST00000489204	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC27	HGNC	ENSG00000148814	51	0	0	74	10	11.9	-	-	-	G	134158188	A	G	134158188	1	3	107	0	1	0	0	0	0	0	0	0	9047	377	13	5		5	LRRC27	10	134158188	RNA	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	13229250	134158188	1376559	104	6589										
MUC6	0	genome.wustl.edu	37	chr11	1031654	1031654	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gacttccagctccagctccaGctgcttggccaccagccgca	9	18	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	1031654	1031654	G	C	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.436	p.L146V	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	77	0	0	38	43	53.09	-	-	-	C	1031654	G	C	1031654	3	2	107	1	0	0	0	0	1	0	0	0	10052	962	34	4	7003	4	MUC6	11	1031654	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		1031654	133974862	105	6590										
MRPL23	0	genome.wustl.edu	37	chr11	1973402	1973402	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tacctcgagggcatctataaCgtgcccgtggctgctgtgcg	13	12	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	1973402	1973402	C	A	SNP	MRPL23	ENST00000381519	human	ensembl	69_37n	1	known	missense	c.186	p.N62K	0.062	pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom	pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	MRPL23	HGNC	ENSG00000214026	89	0	0	81	11	11.96	-	-	-	A	1973402	C	A	1973402	3	1	107	1	0	0	0	0	1	0	0	0	9861	535	19	3	196	3	MRPL23	11	1973402	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	941748	1973402	133033114	106	6591										
LUZP2	0	genome.wustl.edu	37	chr11	24750806	24750806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgacaaagacatcaagagaaCttgatggaattaaagtcaat	8	5	2	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	24750806	24750806	C	T	SNP	LUZP2	ENST00000336930	human	ensembl	69_37n	1	known	missense	c.154	p.L52F	1.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	34	0	0	44	5	10.2	-	-	-	T	24750806	C	T	24750806	3	4	107	1	0	0	0	0	1	0	0	0	9153	565	20	4	160	4	LUZP2	11	24750806	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	22777404	24750806	110255710	107	6592										
ANO3	0	genome.wustl.edu	37	chr11	26660720	26660720	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agtggctgtttgatagacctCtgcctccagatgggtgtcat	12	9	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	26660720	26660720	C	G	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	silent	c.2073	p.L691	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	78	0	0	69	55	44.35	-	-	-	G	26660720	C	G	26660720	2	3	107	1	0	0	0	0	0	0	0	1	697	900	32	2		2	ANO3	11	26660720	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1909914	26660720	108345796	108	6593										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57080067	57080067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agctccagctccccgccttgCaccgccaccactgggtggtg	11	18	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	57080067	57080067	C	G	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.2095	p.A699P	0.003	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	34	0	0	47	18	27.69	-	-	-	G	57080067	C	G	57080067	3	3	107	1	0	0	0	0	1	0	0	0	16415	710	25	4	3122	4	TNKS1BP1	11	57080067	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	30419347	57080067	77926449	109	6594										
NPAS4	0	genome.wustl.edu	37	chr11	66189985	66189985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acccagctgaccacctcactGtgcgccagcaactcaccctg	7	19	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	66189985	66189985	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.391	p.V131M	1.000	smart_PAS,pfscan_PAS	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	67	0	0	46	24	34.29	-	-	-	A	66189985	G	A	66189985	3	1	107	1	0	0	0	0	1	0	0	0	10637	1377	48	4	401	4	NPAS4	11	66189985	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	9109918	66189985	68816531	110	6595										
FAT3	0	genome.wustl.edu	37	chr11	92088166	92088166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttggcttgagacccatgatcCagatcttggactggggggtc	14	9	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	92088166	92088166	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.2888	p.P963L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	77	0	0	57	42	42.42	-	-	-	T	92088166	C	T	92088166	3	4	107	1	0	0	0	0	1	0	0	0	5737	594	21	4	2890	4	FAT3	11	92088166	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	25898181	92088166	42918350	111	6596										
RNF214	0	genome.wustl.edu	37	chr11	117109606	117109606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agagcctccatccagtcactCggtctcttaaggcagggtgc	11	13	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	117109606	117109606	C	T	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	missense	c.397	p.R133W	0.995	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257	72	0	0	79	10	10.99	-	-	-	T	117109606	C	T	117109606	3	4	107	1	0	0	0	0	1	0	0	0	13564	875	31	1	403	1	RNF214	11	117109606	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	25021440	117109606	17896910	112	6597										
MLL	0	genome.wustl.edu	37	chr11	118373416	118373416	+	Frame_Shift_Del	DEL	A	A	-													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttccacctcttcaaatttgcAaaggacagtggttactgtag							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	118373416	118373416	A	-	DEL	MLL	ENST00000389506	human	ensembl	69_37n	1	known	frame_shift_del	c.6800	p.R2268fs	0.815	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	27	0	0	16	10	38.46	-	-	-	-	118373416	A	-	118373416	7	5	107	1	0	1	0	1	0	0	0	0	9691	130	5	0	6906	0	MLL	11	118373416	Frame_Shift_Del	DEL	A	TCGA-A2-A3Y0-01A-11D-A23C-09	1263810	118373416	16633100	113	6598										
MLL	0	genome.wustl.edu	37	chr11	118373824	118373824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tactgaagtcaaaaccttgaAgctatctggaatgagcaaca	8	8	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	118373824	118373824	A	G	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.7208	p.K2403R	0.980	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	37	0	0	27	12	30.77	-	-	-	G	118373824	A	G	118373824	3	3	107	1	0	0	0	0	1	0	0	0	9691	72	3	5	7314	5	MLL	11	118373824	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	408	118373824	16632692	114	6599										
KIRREL3	0	genome.wustl.edu	37	chr11	126294819	126294819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgtgggcacacgctgcttgcCcgcaggacgcaggtcgggct	16	13	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	126294819	126294819	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	69_37n	-1	known	missense	c.1993	p.G665S	0.992	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL3	HGNC	ENSG00000149571	32	0	0	12	15	55.56	-	-	-	T	126294819	C	T	126294819	3	4	107	1	0	0	0	0	1	0	0	0	8379	623	22	4	347	4	KIRREL3	11	126294819	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	7920995	126294819	8711697	115	6600										
PRDM10	0	genome.wustl.edu	37	chr11	129802065	129802065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcggataaattttggaggacGccccggccgtcgacctggac	14	12	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	11	129802065	129802065	G	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.1219	p.R407C	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	72	0	0	76	27	26.21	-	-	-	A	129802065	G	A	129802065	3	1	107	1	0	0	0	0	1	0	0	0	12532	1087	38	1	2315	1	PRDM10	11	129802065	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	3507246	129802065	5204451	116	6601										
LRTM2	0	genome.wustl.edu	37	chr12	1943943	1943943	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggagagcacacggcattgctCagccacagctcccaccttga	10	15	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	1943943	1943943	C	G	SNP	LRTM2	ENST00000543730	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	LRTM2	HGNC	ENSG00000166159	16	0	0	23	10	30.3	-	-	-	G	1943943	C	G	1943943	1	3	107	0	1	0	0	0	0	0	0	0	9111	841	29	2		2	LRTM2	12	1943943	RNA	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		1943943	131907952	117	6602										
SLCO1B3	0	genome.wustl.edu	37	chr12	21036396	21036396	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gaagtaactggtctccagaaCagaaattactcagcacactt	7	10	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	21036396	21036396	C	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.1542	p.N514K	0.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	36	0	0	64	28	30.43	-	-	-	G	21036396	C	G	21036396	3	3	107	1	0	0	0	0	1	0	0	0	14813	477	17	4	1584	4	SLCO1B3	12	21036396	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	19092453	21036396	112815499	118	6603										
SLC38A1	0	genome.wustl.edu	37	chr12	46662748	46662748	+	RNA	DEL	A	A	-													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cttgtgatggtttaacgcggAcaggccattcctccccgtcc							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	46662748	46662748	A	-	DEL	SLC38A1	ENST00000549633	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.139	-	-	-	no_errors	SLC38A1	HGNC	ENSG00000111371	24	0	0	22	12	35.29	-	-	-	-	46662748	A	-	46662748	6	5	107	0	1	1	0	1	0	0	0	0	14690	290	10	0		0	SLC38A1	12	46662748	RNA	DEL	A	TCGA-A2-A3Y0-01A-11D-A23C-09	25626352	46662748	87189147	119	6604										
SCN8A	0	genome.wustl.edu	37	chr12	52164368	52164368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atcgaggaagggctaggcaaGtcttggtggatcctgcggaa	16	7	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	52164368	52164368	G	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.3546	p.K1182N	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	73	0	0	101	27	21.09	-	-	-	C	52164368	G	C	52164368	3	2	107	1	0	0	0	0	1	0	0	0	14012	1020	36	4	3616	4	SCN8A	12	52164368	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	5501620	52164368	81687527	120	6605										
KRT3	0	genome.wustl.edu	37	chr12	53189396	53189396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	caccaaagccaccagacccaCcaaagccaccaggaccacca	5	20	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	53189396	53189396	C	T	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	missense	c.431	p.G144D	0.964	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	129	0	0	103	45	30.41	-	-	-	T	53189396	C	T	53189396	3	4	107	1	0	0	0	0	1	0	0	0	8519	507	18	4	1491	4	KRT3	12	53189396	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1025028	53189396	80662499	121	6606										
LRP1	0	genome.wustl.edu	37	chr12	57556676	57556676	+	Missense_Mutation	SNP	T	T	C													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gccgggtgaacaatggcggcTgcagcagcctgtgcttggcc							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	57556676	57556676	T	C	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.2440	p.C814R	1.000	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	139	0	0	161	19	10.44	-	-	-	C	57556676	T	C	57556676	3	2	107	1	0	0	0	0	1	0	0	0	9017	1580	55	5	2498	5	LRP1	12	57556676	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	4367280	57556676	76295219	122	6607	51	2								
LRP1	0	genome.wustl.edu	37	chr12	57556677	57556677	+	Missense_Mutation	SNP	G	G	T													0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccgggtgaacaatggcggctGcagcagcctgtgcttggcca							TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	57556677	57556677	G	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.2441	p.C814F	1.000	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	137	0	0	158	18	10.23	-	-	-	T	57556677	G	T	57556677	3	4	107	1	0	0	0	0	1	0	0	0	9017	1319	46	4	2499	4	LRP1	12	57556677	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	1	57556677	76295218	123	6608	51	2								
LRP1	0	genome.wustl.edu	37	chr12	57591445	57591445	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	accttaacgggagcaatgtgCaggtgaggcgggcggccctc	16	11	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	57591445	57591445	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	nonsense	c.9280	p.Q3094*	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	46	0	0	48	21	30.43	-	-	-	T	57591445	C	T	57591445	4	4	107	1	0	0	0	0	0	1	0	0	9017	711	25	4	9510	4	LRP1	12	57591445	Nonsense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	34768	57591445	76260450	124	6609										
HAL	0	genome.wustl.edu	37	chr12	96389672	96389672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gccattccccacgtacgtgcAccgtgtatctgggcatggct	11	14	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	96389672	96389672	A	G	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.17	p.V6A	1.000	NULL	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	60	0	0	58	10	14.71	-	-	-	G	96389672	A	G	96389672	3	3	107	1	0	0	0	0	1	0	0	0	6998	159	6	5	2036	5	HAL	12	96389672	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	38798227	96389672	37462223	125	6610										
NR1H4	0	genome.wustl.edu	37	chr12	100957179	100957179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gactgaattacggacattcaAtcatcaccacgctgagatgc	8	11	3	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	100957179	100957179	A	G	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	missense	c.1373	p.N458S	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	30	0	0	22	24	52.17	-	-	-	G	100957179	A	G	100957179	3	3	107	1	0	0	0	0	1	0	0	0	10692	101	4	5	1365	5	NR1H4	12	100957179	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	4567507	100957179	32894716	126	6611										
ZCCHC8	0	genome.wustl.edu	37	chr12	122975062	122975062	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atcatttttctgctgttcctCaaatctttttactaaatttg	3	8	4	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	122975062	122975062	C	G	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.370	p.E124Q	1.000	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	61	0	0	38	31	44.93	-	-	-	G	122975062	C	G	122975062	3	3	107	1	0	0	0	0	1	0	0	0	17690	835	29	2	1797	2	ZCCHC8	12	122975062	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	22017883	122975062	10876833	127	6612										
DNAH10	0	genome.wustl.edu	37	chr12	124332600	124332600	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctggcgaaagccttgggcttGctctgtgttgtcaccaactg	12	11	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	12	124332600	124332600	G	C	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.5553	p.L1851F	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	56	0	0	43	45	51.14	-	-	-	C	124332600	G	C	124332600	3	2	107	1	0	0	0	0	1	0	0	0	4634	1310	46	4	5679	4	DNAH10	12	124332600	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	1357538	124332600	9519295	128	6613										
TPTE2	0	genome.wustl.edu	37	chr13	20049728	20049728	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	catacccaaatgcaaaggatGatacaattgaatgcacaatt	6	8	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	13	20049728	20049728	G	T	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	nonsense	c.215	p.S72*	0.067	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	48	0	0	51	23	31.08	-	-	-	T	20049728	G	T	20049728	4	4	107	1	0	0	0	0	0	1	0	0	16527	1294	45	2	1417	2	TPTE2	13	20049728	Nonsense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		20049728	95120150	129	6614										
LHFP	0	genome.wustl.edu	37	chr13	40175303	40175303	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	caggaggtggcagcacaaagAaaagacagcaaagcccagat	12	9	0	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	13	40175303	40175303	A	G	SNP	LHFP	ENST00000379589	human	ensembl	69_37n	-1	known	silent	c.51	p.F17	0.985	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFP	HGNC	ENSG00000183722	21	0	0	12	6	33.33	-	-	-	G	40175303	A	G	40175303	2	3	107	1	0	0	0	0	0	0	0	1	8818	243	9	5		5	LHFP	13	40175303	Silent	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	20125575	40175303	74994575	130	6615										
TSC22D1	0	genome.wustl.edu	37	chr13	45149669	45149669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccccaggtgtctcggcttccTggaagttatttagggtctct	11	11	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	13	45149669	45149669	T	G	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.542	p.Q181P	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	77	0	0	50	18	26.47	-	-	-	G	45149669	T	G	45149669	3	3	107	1	0	0	0	0	1	0	0	0	16703	1580	55	5	2820	5	TSC22D1	13	45149669	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	4974366	45149669	70020209	131	6616										
REC8	0	genome.wustl.edu	37	chr14	24648629	24648629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccctagaggcagctgaagagGagaagtcccgcatcagcctc	12	13	1	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	14	24648629	24648629	G	A	SNP	REC8	ENST00000311457	human	ensembl	69_37n	1	known	missense	c.1276	p.E426K	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	47	0	0	24	24	50	-	-	-	A	24648629	G	A	24648629	3	1	107	1	0	0	0	0	1	0	0	0	13282	1175	41	2	1338	2	REC8	14	24648629	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		24648629	82700911	132	6617										
NEK9	0	genome.wustl.edu	37	chr14	75576564	75576564	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tactacagcaatgggtgcttCagtcacagtgcttgacctgc	10	11	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	14	75576564	75576564	C	G	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	missense	c.1006	p.E336Q	1.000	superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	21	0	0	14	15	51.72	-	-	-	G	75576564	C	G	75576564	3	3	107	1	0	0	0	0	1	0	0	0	10403	835	29	2	1985	2	NEK9	14	75576564	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	50927935	75576564	31772976	133	6618										
GANC	0	genome.wustl.edu	37	chr15	42621623	42621623	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aattgggagcacagagagctCcacaacatctacggttttta	9	9	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	42621623	42621623	C	G	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	silent	c.1620	p.L540	0.984	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	74	0	0	86	48	35.56	-	-	-	G	42621623	C	G	42621623	2	3	107	1	0	0	0	0	0	0	0	1	6284	842	30	2		2	GANC	15	42621623	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		42621623	59909769	134	6619										
DTWD1	0	genome.wustl.edu	37	chr15	49917567	49917567	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tggtggttccagaatgttctActgctatacatgttatgttc	9	7	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	49917567	49917567	A	G	SNP	DTWD1	ENST00000251250	human	ensembl	69_37n	1	known	missense	c.203	p.Y68C	1.000	pfam_DTW	pfam_DTW	-	no_errors	DTWD1	HGNC	ENSG00000104047	103	0	0	135	21	13.46	-	-	-	G	49917567	A	G	49917567	3	3	107	1	0	0	0	0	1	0	0	0	4826	391	14	5	205	5	DTWD1	15	49917567	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	7295944	49917567	52613825	135	6620										
NEDD4	0	genome.wustl.edu	37	chr15	56126305	56126305	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tactttgtatgttccctccaGtcattcacatcaacatctcc	3	14	4	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	56126305	56126305	G	C	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	missense	c.3618	p.D1206E	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	61	0	0	64	16	20	-	-	-	C	56126305	G	C	56126305	3	2	107	1	0	0	0	0	1	0	0	0	10382	1020	36	4	357	4	NEDD4	15	56126305	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	6208738	56126305	46405087	136	6621										
PIF1	0	genome.wustl.edu	37	chr15	65114490	65114490	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aaggcatggagggtggtgccCccgatgtggcaggctgccac	17	11	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	65114490	65114490	C	G	SNP	PIF1	ENST00000333425	human	ensembl	69_37n	-1	known	silent	c.792	p.G264	1.000	pfam_DNA_helicase_PIF1	pfam_DNA_helicase_PIF1,pfam_DNA_helicase	-	no_errors	PIF1	HGNC	ENSG00000140451	56	0	0	33	9	21.43	-	-	-	G	65114490	C	G	65114490	2	3	107	1	0	0	0	0	0	0	0	1	11957	610	22	4		4	PIF1	15	65114490	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	8988185	65114490	37416902	137	6622										
ACAN	0	genome.wustl.edu	37	chr15	89416111	89416111	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cttccccactcccacccacaGcaatttgagaactggcgccc	6	19	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	89416111	89416111	G	C	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	splice_site	c.7189-1	e15-1	1.000	-	-	-	no_errors	ACAN	HGNC	ENSG00000157766	21	0	0	13	11	45.83	-	-	-	C	89416111	G	C	89416111	5	2	107	1	0	0	0	0	0	0	1	0	117	985	34	4	7246	4	ACAN	15	89416111	Splice_Site	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	24301621	89416111	13115281	138	6623										
CHD2	0	genome.wustl.edu	37	chr15	93524061	93524061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acagctcaaatccttttaatAaagaagagctgacagctatt	6	8	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	15	93524061	93524061	A	G	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.2893	p.K965E	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	27	0	0	58	16	21.62	-	-	-	G	93524061	A	G	93524061	3	3	107	1	0	0	0	0	1	0	0	0	3354	363	13	5	2983	5	CHD2	15	93524061	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	4107950	93524061	9007331	139	6624										
PKD1	0	genome.wustl.edu	37	chr16	2161709	2161709	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtgtaaagaacacccccaggCgagggcagcgggtgcgggta	17	10	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	2161709	2161709	C	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	silent	c.3459	p.S1153	0.000	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	152	0	0	161	62	27.68	-	-	-	A	2161709	C	A	2161709	2	1	107	1	0	0	0	0	0	0	0	1	12037	755	27	3		3	PKD1	16	2161709	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		2161709	88193044	140	6625										
CCNF	0	genome.wustl.edu	37	chr16	2499874	2499874	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggacctcaccggattctcctAtgaagacctcattccctgcg	8	15	3	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	2499874	2499874	A	G	SNP	CCNF	ENST00000397066	human	ensembl	69_37n	1	known	missense	c.1445	p.Y482C	0.023	pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,pfam_F-box_dom_cyclin-like,superfamily_Cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	CCNF	HGNC	ENSG00000162063	47	0	0	62	12	16.22	-	-	-	G	2499874	A	G	2499874	3	3	107	1	0	0	0	0	1	0	0	0	2951	449	16	5	1495	5	CCNF	16	2499874	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	338165	2499874	87854879	141	6626										
CIITA	0	genome.wustl.edu	37	chr16	10997664	10997664	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctcccaacatctccagaccgGccaggctccaccagcccctt	6	21	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	10997664	10997664	G	T	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	silent	c.849	p.R283	0.673	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	55	0	0	64	17	20.99	-	-	-	T	10997664	G	T	10997664	2	4	107	1	0	0	0	0	0	0	0	1	3457	1190	42	4		4	CIITA	16	10997664	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	8497790	10997664	79357089	142	6627										
ZNF423	0	genome.wustl.edu	37	chr16	49672766	49672766	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gacgaggccacccaggagagTtgtgggtcgtcatcaccatc	13	12	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	49672766	49672766	T	C	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	silent	c.297	p.Q99	0.563	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	29	0	0	21	17	44.74	-	-	-	C	49672766	T	C	49672766	2	2	107	1	0	0	0	0	0	0	0	1	17994	1722	60	5		5	ZNF423	16	49672766	Silent	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	38675102	49672766	40681987	143	6628										
MMP2	0	genome.wustl.edu	37	chr16	55536778	55536778	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atccccgataacctggatgcCgtcgtggacctgcagggcgg	14	13	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	55536778	55536778	C	G	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	silent	c.1857	p.A619	0.644	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	37	0	0	40	11	21.57	-	-	-	G	55536778	C	G	55536778	2	3	107	1	0	0	0	0	0	0	0	1	9729	639	23	3		3	MMP2	16	55536778	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	5864012	55536778	34817975	144	6629										
NFATC3	0	genome.wustl.edu	37	chr16	68156617	68156617	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgtgggaaacggaggcactcCagtgctgaagtttgttatgc	14	7	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	68156617	68156617	C	T	SNP	NFATC3	ENST00000570212	human	ensembl	69_37n	1	putative	nonsense	c.784	p.Q262*	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NFATC3	HGNC	ENSG00000072736	41	0	0	55	15	21.43	-	-	-	T	68156617	C	T	68156617	4	4	107	1	0	0	0	0	0	1	0	0	10436	581	21	4	837	4	NFATC3	16	68156617	Nonsense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	12619839	68156617	22198136	145	6630										
HPR	0	genome.wustl.edu	37	chr16	72110338	72110338	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acaggggccacgctgatcaaTgaacaatggctgctgaccac	11	12	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	72110338	72110338	T	A	SNP	HPR	ENST00000228226	human	ensembl	69_37n	1	known	missense	c.516	p.N172K	0.998	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Haptoglobin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Peptidase_S1_S6,pirsf_Haptoglobin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HPR	HGNC	ENSG00000261701	41	0	0	53	21	28.38	-	-	-	A	72110338	T	A	72110338	3	1	107	1	0	0	0	0	1	0	0	0	7388	1461	51	5	423	5	HPR	16	72110338	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	3953721	72110338	18244415	146	6631										
ZFHX3	0	genome.wustl.edu	37	chr16	72821415	72821415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttgagtgagcggcagactgcGaggtagatgcggtgctagga	18	6	0	4			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	72821415	72821415	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.10760	p.S3587L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	33	0	0	50	25	33.33	-	-	-	A	72821415	G	A	72821415	3	1	107	1	0	0	0	0	1	0	0	0	17730	1059	37	1	355	1	ZFHX3	16	72821415	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	711077	72821415	17533338	147	6632										
BCAR1	0	genome.wustl.edu	37	chr16	75263783	75263783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggcctcacactgctccaggtAgaagagcagcagctgccggt	13	13	1	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	75263783	75263783	A	G	SNP	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	missense	c.2377	p.Y793H	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	100	0	0	86	38	30.65	-	-	-	G	75263783	A	G	75263783	3	3	107	1	0	0	0	0	1	0	0	0	1352	420	15	5	377	5	BCAR1	16	75263783	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	2442368	75263783	15090970	148	6633										
C16orf46	0	genome.wustl.edu	37	chr16	81095551	81095551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gctggggccctggggggctgCctgagtctgggaggggctgc	22	10	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	81095551	81095551	C	T	SNP	C16orf46	ENST00000299578	human	ensembl	69_37n	-1	known	missense	c.403	p.A135T	0.002	NULL	NULL	-	no_errors	C16orf46	HGNC	ENSG00000166455	38	0	0	53	15	22.06	-	-	-	T	81095551	C	T	81095551	3	4	107	1	0	0	0	0	1	0	0	0	1828	739	26	4	816	4	C16orf46	16	81095551	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	5831768	81095551	9259202	149	6634										
C16orf7	0	genome.wustl.edu	37	chr16	89776248	89776248	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gttcctcaatgcaggccaggCagcggtccttggaggcagct	14	12	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	16	89776248	89776248	C	A	SNP	C16orf7	ENST00000389386	human	ensembl	69_37n	-1	known	missense	c.1325	p.C442F	1.000	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	C16orf7	HGNC	ENSG00000075399	64	0	0	61	20	24.69	-	-	-	A	89776248	C	A	89776248	3	1	107	1	0	0	0	0	1	0	0	0	1841	710	25	4	590	4	C16orf7	16	89776248	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	8680697	89776248	578505	150	6635										
TEKT1	0	genome.wustl.edu	37	chr17	6704183	6704183	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccaagcgcgtatgagccaccTtggctggcccttcttggtca	11	14	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	6704183	6704183	T	G	SNP	TEKT1	ENST00000338694	human	ensembl	69_37n	-1	known	missense	c.932	p.K311T	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858	97	0	0	44	56	56	-	-	-	G	6704183	T	G	6704183	3	3	107	1	0	0	0	0	1	0	0	0	15847	1609	56	5	332	5	TEKT1	17	6704183	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09		6704183	74491027	151	6636										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	27	0	0	17	12	41.38	-	-	-	A	7574003	G	A	7574003	4	1	107	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	869820	7574003	73621207	152	6637										
WSB1	0	genome.wustl.edu	37	chr17	25630544	25630544	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cttttgggtcatcagttccaGaaaaacagagtcgctgtgta	10	8	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	25630544	25630544	G	C	SNP	WSB1	ENST00000262394	human	ensembl	69_37n	1	known	missense	c.361	p.E121Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,prints_G-protein_beta_WD-40_rep,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WSB1	HGNC	ENSG00000109046	56	0	0	55	7	11.29	-	-	-	C	25630544	G	C	25630544	3	2	107	1	0	0	0	0	1	0	0	0	17501	943	33	2	371	2	WSB1	17	25630544	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	18056541	25630544	55564666	153	6638										
WNT3	0	genome.wustl.edu	37	chr17	44851158	44851158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	acgccctcggccacgctgggCatgatctcgatgtaattgcg	12	13	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	44851158	44851158	C	A	SNP	WNT3	ENST00000225512	human	ensembl	69_37n	-1	known	missense	c.198	p.M66I	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3	HGNC	ENSG00000108379	65	0	0	36	44	55	-	-	-	A	44851158	C	A	44851158	3	1	107	1	0	0	0	0	1	0	0	0	17485	710	25	4	881	4	WNT3	17	44851158	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	19220614	44851158	36344052	154	6639										
TNRC6C	0	genome.wustl.edu	37	chr17	76083110	76083110	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tcgcacccacagactcccggCctacctgacctgcagaccaa	7	19	0	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	76083110	76083110	C	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	silent	c.3729	p.G1243	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	77	0	0	84	30	26.32	-	-	-	A	76083110	C	A	76083110	2	1	107	1	0	0	0	0	0	0	0	1	16437	726	26	4		4	TNRC6C	17	76083110	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	31231952	76083110	5112100	155	6640										
DNAH17	0	genome.wustl.edu	37	chr17	76445507	76445507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agacattacctgaaacgtaaCttgtgccaggaaaatgagtt	9	7	0	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	17	76445507	76445507	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.11158	p.V3720F	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	58	0	0	38	36	48.65	-	-	-	A	76445507	C	A	76445507	3	1	107	1	0	0	0	0	1	0	0	0	4637	565	20	4	2240	4	DNAH17	17	76445507	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	362397	76445507	4749703	156	6641										
TCEB3C	0	genome.wustl.edu	37	chr18	44554806	44554806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tccggggtcagcggctcctgCagacttctcttgcctcctgg	12	15	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	18	44554806	44554806	C	G	SNP	TCEB3C	ENST00000330682	human	ensembl	69_37n	-1	known	missense	c.1408	p.A470P	0.004	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3C	HGNC	ENSG00000183791	31	0	0	19	4	17.39	-	-	-	G	44554806	C	G	44554806	3	3	107	1	0	0	0	0	1	0	0	0	15778	710	25	4	1879	4	TCEB3C	18	44554806	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		44554806	33522442	157	6642										
PHLPP1	0	genome.wustl.edu	37	chr18	60572515	60572515	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgtcctacatggatgtttcAaggtaagaagtcaagtctta	9	7	3	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	18	60572515	60572515	A	G	SNP	PHLPP1	ENST00000591386	human	ensembl	69_37n	1	novel	missense	c.76	p.K26E	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_start_codon:pseudogene:no_stop_codon	PHLPP1	HGNC	ENSG00000081913	54	0	0	68	11	13.92	-	-	-	G	60572515	A	G	60572515	3	3	107	1	0	0	0	0	1	0	0	0	11928	117	5	5	2736	5	PHLPP1	18	60572515	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	16017709	60572515	17504733	158	6643										
ZNF236	0	genome.wustl.edu	37	chr18	74536333	74536333	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	catgggcctttgtgggctgcTggagagatgttggctgcacc	16	9	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	18	74536333	74536333	T	C	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	missense	c.20	p.L7P	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	85	0	0	118	17	12.5	-	-	-	C	74536333	T	C	74536333	3	2	107	1	0	0	0	0	1	0	0	0	17885	1580	55	5	22	5	ZNF236	18	74536333	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	13963818	74536333	3540915	159	6644										
NDUFA7	0	genome.wustl.edu	37	chr19	8381404	8381404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgctggcttgcctgacaccAgcgccttctgcgacgacatg	11	15	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	8381404	8381404	A	G	SNP	NDUFA7	ENST00000301457	human	ensembl	69_37n	-1	known	missense	c.227	p.L76P	0.971	pfam_NADH-UbQ_OxRdtase_B14.5a_su	pfam_NADH-UbQ_OxRdtase_B14.5a_su	-	no_errors	NDUFA7	HGNC	ENSG00000167774	28	0	0	30	9	23.08	-	-	-	G	8381404	A	G	8381404	3	3	107	1	0	0	0	0	1	0	0	0	10342	188	7	5	122	5	NDUFA7	19	8381404	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09		8381404	50747579	160	6645										
ZNF799	0	genome.wustl.edu	37	chr19	12502700	12502700	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aggacttcccacattctttaCaattatatggtttctttcca	4	10	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	12502700	12502700	C	G	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	missense	c.512	p.C171S	0.662	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	104	0	0	154	42	21.43	-	-	-	G	12502700	C	G	12502700	3	3	107	1	0	0	0	0	1	0	0	0	18259	478	17	4	1423	4	ZNF799	19	12502700	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	4121296	12502700	46626283	161	6646										
ZNF253	0	genome.wustl.edu	37	chr19	20003546	20003546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgttcctccacttttaattaGcataagataattcatactgg	5	8	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	20003546	20003546	G	T	SNP	ZNF253	ENST00000589717	human	ensembl	69_37n	1	known	missense	c.1490	p.S497I	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771	27	0	0	35	4	10.26	-	-	-	T	20003546	G	T	20003546	3	4	107	1	0	0	0	0	1	0	0	0	17893	971	34	4	1504	4	ZNF253	19	20003546	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	7500846	20003546	39125437	162	6647										
ZNF565	0	genome.wustl.edu	37	chr19	36673716	36673716	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tagggtctgtcgccagtatgGactctctgatgtcgtgtgag	14	8	2	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	36673716	36673716	G	C	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	silent	c.1152	p.V384	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	55	0	0	68	17	20	-	-	-	C	36673716	G	C	36673716	2	2	107	1	0	0	0	0	0	0	0	1	18092	1161	41	2		2	ZNF565	19	36673716	Silent	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	16670170	36673716	22455267	163	6648										
KCNK6	0	genome.wustl.edu	37	chr19	38817294	38817294	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ttctccatcgcctttgcgctCctgggcgtgccgaccaccat	9	17	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	38817294	38817294	C	G	SNP	KCNK6	ENST00000263372	human	ensembl	69_37n	1	known	silent	c.384	p.L128	0.961	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TWIK2,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TWIK1	-	no_errors	KCNK6	HGNC	ENSG00000099337	103	0	0	98	50	33.78	-	-	-	G	38817294	C	G	38817294	2	3	107	1	0	0	0	0	0	0	0	1	8124	842	30	2		2	KCNK6	19	38817294	Silent	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	2143578	38817294	20311689	164	6649										
NFKBIB	0	genome.wustl.edu	37	chr19	39390822	39390822	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctgtcgtgggctcccctcgtCttcggctacgtcactgagga	12	14	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	39390822	39390822	C	G	SNP	NFKBIB	ENST00000392079	human	ensembl	69_37n	1	known	missense	c.110	p.S37C	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825	138	0	0	224	30	11.81	-	-	-	G	39390822	C	G	39390822	3	3	107	1	0	0	0	0	1	0	0	0	10450	913	32	2	152	2	NFKBIB	19	39390822	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	573528	39390822	19738161	165	6650										
TPRX1	0	genome.wustl.edu	37	chr19	48306017	48306017	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cagctgggatgcccttctggGctctgcacccagggccaccc	12	17	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	48306017	48306017	G	C	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.542	p.A181G	0.001	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	101	0	0	89	44	33.08	-	-	-	C	48306017	G	C	48306017	3	2	107	1	0	0	0	0	1	0	0	0	16518	1203	42	4	988	4	TPRX1	19	48306017	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	8915195	48306017	10822966	166	6651										
HRC	0	genome.wustl.edu	37	chr19	49657150	49657150	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tctttgaccatggccagtttCttcatcttggtggctttgcc	9	11	4	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	49657150	49657150	C	G	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.1345	p.E449Q	0.123	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	99	0	0	114	52	31.33	-	-	-	G	49657150	C	G	49657150	3	3	107	1	0	0	0	0	1	0	0	0	7403	922	32	2	778	2	HRC	19	49657150	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	1351133	49657150	9471833	167	6652										
TMC4	0	genome.wustl.edu	37	chr19	54666835	54666835	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gagtcgcccccacaagtgatCtgattccagagagagaagag	12	10	1	5			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	54666835	54666835	C	A	SNP	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	missense	c.1335	p.Q445H	1.000	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	36	0	0	40	7	14.89	-	-	-	A	54666835	C	A	54666835	3	1	107	1	0	0	0	0	1	0	0	0	16082	912	32	2	813	2	TMC4	19	54666835	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	5009685	54666835	4462148	168	6653										
NLRP8	0	genome.wustl.edu	37	chr19	56466905	56466905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ccttggcatgagtattcttcGgagaattgcaggtgaggaag	14	6	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	19	56466905	56466905	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.1481	p.R494Q	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	87	0	0	113	49	30.25	-	-	-	A	56466905	G	A	56466905	3	1	107	1	0	0	0	0	1	0	0	0	10555	1116	39	1	1491	1	NLRP8	19	56466905	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	1800070	56466905	2662078	169	6654										
TASP1	0	genome.wustl.edu	37	chr20	13605842	13605842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtgttcataccttctgacaaGctcgtttgcatacatgttta	7	9	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	20	13605842	13605842	G	A	SNP	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	missense	c.203	p.A68V	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	62	0	0	87	37	29.6	-	-	-	A	13605842	G	A	13605842	3	1	107	1	0	0	0	0	1	0	0	0	15681	971	34	4	1107	4	TASP1	20	13605842	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		13605842	49419678	170	6655										
PROCR	0	genome.wustl.edu	37	chr20	33764193	33764193	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gtatgaactgcgggaattccTggaggacacctgtgtgcagt	14	8	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	20	33764193	33764193	T	G	SNP	PROCR	ENST00000216968	human	ensembl	69_37n	1	known	missense	c.545	p.L182R	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000	63	0	0	58	12	17.14	-	-	-	G	33764193	T	G	33764193	3	3	107	1	0	0	0	0	1	0	0	0	12628	1580	55	5	555	5	PROCR	20	33764193	Missense_Mutation	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	20158351	33764193	29261327	171	6656										
SPATA2	0	genome.wustl.edu	37	chr20	48523167	48523167	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	agctcggagtagcccttgtcCttcacttgtgagtggatttc	11	10	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	20	48523167	48523167	C	G	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	missense	c.552	p.K184N	1.000	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	34	0	0	49	7	12.5	-	-	-	G	48523167	C	G	48523167	3	3	107	1	0	0	0	0	1	0	0	0	15096	680	24	4	1014	4	SPATA2	20	48523167	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	14758974	48523167	14502353	172	6657										
BRWD1	0	genome.wustl.edu	37	chr21	40590186	40590186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	aatcaacagggcctgcaaaaGctgctgctatatctgttagg	10	9	2	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	21	40590186	40590186	G	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.3551	p.A1184G	0.999	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	55	0	0	102	13	11.21	-	-	-	C	40590186	G	C	40590186	3	2	107	1	0	0	0	0	1	0	0	0	1533	971	34	4	3698	4	BRWD1	21	40590186	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09		40590186	7539709	173	6658										
FTCD	0	genome.wustl.edu	37	chr21	47575476	47575476	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gatgctcctctctgggcagaTggaaggacagggccagtgct	15	10	1	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	21	47575476	47575476	T	G	SNP	FTCD	ENST00000498355	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FTCD	HGNC	ENSG00000160282	30	0	0	22	8	26.67	-	-	-	G	47575476	T	G	47575476	1	3	107	0	1	0	0	0	0	0	0	0	6130	1479	51	5		5	FTCD	21	47575476	RNA	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	6985290	47575476	554419	174	6659										
GPM6B	0	genome.wustl.edu	37	chrX	13795518	13795518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggcagagccacatatttttcCggggaaagcattccaaggaa	11	9	0	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	13795518	13795518	C	T	SNP	GPM6B	ENST00000316715	human	ensembl	69_37n	-1	known	missense	c.724	p.G242R	1.000	pfam_Myelin_PLP,smart_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653	33	0	0	38	22	36.67	-	-	-	T	13795518	C	T	13795518	3	4	107	1	0	0	0	0	1	0	0	0	6666	661	23	1	359	1	GPM6B	23	13795518	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09		13795518	141475042	175	6660										
SYN1	0	genome.wustl.edu	37	chrX	47432351	47432351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ggctaaggctgggcctgggcGgggctggctctggaaggttg	21	8	1	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	47432351	47432351	G	T	SNP	SYN1	ENST00000295987	human	ensembl	69_37n	-1	known	missense	c.2030	p.P677Q	1.000	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056	104	0	0	89	31	25.83	-	-	-	T	47432351	G	T	47432351	3	4	107	1	0	0	0	0	1	0	0	0	15532	1116	39	3	91	3	SYN1	23	47432351	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	33636833	47432351	107838209	176	6661										
CFP	0	genome.wustl.edu	37	chrX	47485563	47485563	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	actccactctgaccatgatcCtttcactgcaatgaggggta	8	12	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	47485563	47485563	C	A	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	nonsense	c.1138	p.G380*	0.997	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	69	0	0	52	13	20	-	-	-	A	47485563	C	A	47485563	4	1	107	1	0	0	0	0	0	1	0	0	3322	690	24	4	279	4	CFP	23	47485563	Nonsense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	53212	47485563	107784997	177	6662										
WDR13	0	genome.wustl.edu	37	chrX	48458724	48458724	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	cagtcccaagggtgcgcttcGccaatgatgaccgacaccgc	11	15	0	2			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	48458724	48458724	G	A	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	missense	c.541	p.A181T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	64	0	0	68	20	22.73	-	-	-	A	48458724	G	A	48458724	3	1	107	1	0	0	0	0	1	0	0	0	17372	1087	38	1	559	1	WDR13	23	48458724	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	973161	48458724	106811836	178	6663										
CCNB3	0	genome.wustl.edu	37	chrX	50053904	50053904	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gaaagagaccctcctcaaaaAgccattagccttgaagatgt	8	10	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	50053904	50053904	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.2735	p.K912T	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	30	0	0	26	18	40.91	-	-	-	C	50053904	A	C	50053904	3	2	107	1	0	0	0	0	1	0	0	0	2943	72	3	5	2749	5	CCNB3	23	50053904	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	1595180	50053904	105216656	179	6664										
FAAH2	0	genome.wustl.edu	37	chrX	57458464	57458464	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	atgtcagcaaagggacatgaTgggaaggtatttttacctct	11	6	2	1			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	57458464	57458464	T	C	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	1	known	silent	c.1110	p.D370	0.995	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591	92	0	0	83	26	23.85	-	-	-	C	57458464	T	C	57458464	2	2	107	1	0	0	0	0	0	0	0	1	5394	1461	51	5		5	FAAH2	23	57458464	Silent	SNP	T	TCGA-A2-A3Y0-01A-11D-A23C-09	7404560	57458464	97812096	180	6665										
COL4A6	0	genome.wustl.edu	37	chrX	107420161	107420161	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gcctggatttccaggaaggcCttttagccctggcagccctt	11	13	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	107420161	107420161	C	G	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.2599	p.G867R	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	97	0	0	77	11	12.5	-	-	-	G	107420161	C	G	107420161	3	3	107	1	0	0	0	0	1	0	0	0	3725	681	24	4	2548	4	COL4A6	23	107420161	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	49961697	107420161	47850399	181	6666										
PLS3	0	genome.wustl.edu	37	chrX	114879343	114879343	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgtgaatattcttaacaggaGaaactcgtgaagaaagaacc	9	6	1	5			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	114879343	114879343	G	A	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.1186	p.E396K	1.000	superfamily_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	78	0	0	93	33	26.19	-	-	-	A	114879343	G	A	114879343	3	1	107	1	0	0	0	0	1	0	0	0	12182	943	33	2	1224	2	PLS3	23	114879343	Missense_Mutation	SNP	G	TCGA-A2-A3Y0-01A-11D-A23C-09	7459182	114879343	40391217	182	6667										
MAGEA11	0	genome.wustl.edu	37	chrX	148798081	148798081	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	tgagcagagcatgcccaagtCtggcctcctgataatagtcc	10	12	1	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	148798081	148798081	C	G	SNP	MAGEA11	ENST00000355220	human	ensembl	69_37n	1	known	missense	c.935	p.S312C	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	71	0	0	93	28	23.14	-	-	-	G	148798081	C	G	148798081	3	3	107	1	0	0	0	0	1	0	0	0	9232	913	32	2	962	2	MAGEA11	23	148798081	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	33918738	148798081	6472479	183	6668										
MAMLD1	0	genome.wustl.edu	37	chrX	149631069	149631069	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	ctcgtggatggaggaagaagAtttatcttttctctacaaga	10	6	2	3			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	149631069	149631069	A	T	SNP	MAMLD1	ENST00000262858	human	ensembl	69_37n	1	known	missense	c.128	p.D43V	0.015	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	39	0	0	43	27	38.57	-	-	-	T	149631069	A	T	149631069	3	4	107	1	0	0	0	0	1	0	0	0	9279	333	12	5	134	5	MAMLD1	23	149631069	Missense_Mutation	SNP	A	TCGA-A2-A3Y0-01A-11D-A23C-09	832988	149631069	5639491	184	6669										
PLXNA3	0	genome.wustl.edu	37	chrX	153693508	153693508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104972375690608	19	0.177965685243989	1.4881595609962	2.01684782608696	1.02675889328063	0.22314250965169	0.829784693685752	0	gggtgcaggggcggcagcagCgggtgcctgccgtgcgcttc	20	12	0	0			TCGA-A2-A3Y0-01A-11D-A23C-09	TCGA-A2-A3Y0-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8fbb398-d1da-4444-984a-22c8523625da	46e1fd58-c2ea-46ef-bfc9-26d61e7be608	X	153693508	153693508	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.2191	p.R731W	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	106	0	0	147	36	19.67	-	-	-	T	153693508	C	T	153693508	3	4	107	1	0	0	0	0	1	0	0	0	12195	759	27	1	2229	1	PLXNA3	23	153693508	Missense_Mutation	SNP	C	TCGA-A2-A3Y0-01A-11D-A23C-09	4062439	153693508	1577052	185	6670										
UBR4	0	genome.wustl.edu	37	chr1	19428097	19428097	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtagcgcttggctgtctcaaTgcacacagccatgaaggcct	11	12	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	19428097	19428097	T	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.12940	p.I4314F	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	63	0	0	22	8	26.67	-	-	-	A	19428097	T	A	19428097	3	1	108	1	0	0	0	0	1	0	0	0	17001	1464	51	5	2687	5	UBR4	1	19428097	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09		19428097	229822524	1	6671										
UBXN11	0	genome.wustl.edu	37	chr1	26620739	26620739	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtcatccagtccctctcgccAtgctctgagactgtcttgct	8	15	4	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	26620739	26620739	A	T	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.516	p.H172Q	0.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	65	0	0	26	12	31.58	-	-	-	T	26620739	A	T	26620739	3	4	108	1	0	0	0	0	1	0	0	0	17010	214	8	5	1078	5	UBXN11	1	26620739	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	7192642	26620739	222629882	2	6672										
ARID1A	0	genome.wustl.edu	37	chr1	27092809	27092809	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tggctggcatgatcaaccctCagggacccccatattccatg	9	14	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	27092809	27092809	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.2830	p.Q944*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	66	0	0	29	14	32.56	-	-	-	T	27092809	C	T	27092809	4	4	108	1	0	0	0	0	0	1	0	0	915	827	29	2	2864	2	ARID1A	1	27092809	Nonsense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	472070	27092809	222157812	3	6673										
PABPC4	0	genome.wustl.edu	37	chr1	40041514	40041514	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggcagacccggatggacagcAcaggccccgcggggctgaac	16	14	0	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	40041514	40041514	A	T	SNP	PABPC4	ENST00000372858	human	ensembl	69_37n	-1	known	missense	c.110	p.V37E	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	109	0	0	83	43	33.86	-	-	-	T	40041514	A	T	40041514	3	4	108	1	0	0	0	0	1	0	0	0	11439	159	6	5	1932	5	PABPC4	1	40041514	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	12948705	40041514	209209107	4	6674										
EPS8L3	0	genome.wustl.edu	37	chr1	110300157	110300157	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tcaggggcacttgtctccttCagccaggtggccagccttcc	11	15	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	110300157	110300157	C	T	SNP	EPS8L3	ENST00000369805	human	ensembl	69_37n	-1	known	silent	c.918	p.L306	0.225	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758	99	0	0	100	15	13.04	-	-	-	T	110300157	C	T	110300157	2	4	108	1	0	0	0	0	0	0	0	1	5234	813	29	2		2	EPS8L3	1	110300157	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	70258643	110300157	138950464	5	6675										
ST7L	0	genome.wustl.edu	37	chr1	113161562	113161562	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ttctcacacagcctcaaaggGatcctcagggcgtaaagcag	10	12	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	113161562	113161562	G	T	SNP	ST7L	ENST00000358039	human	ensembl	69_37n	-1	known	silent	c.174	p.I58	0.933	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341	55	0	0	38	10	20.83	-	-	-	T	113161562	G	T	113161562	2	4	108	1	0	0	0	0	0	0	0	1	15321	1164	41	2		2	ST7L	1	113161562	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	2861405	113161562	136089059	6	6676										
HSD3B2	0	genome.wustl.edu	37	chr1	119965062	119965062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aatttactcctatcaaccccCcttcaaccgccacacagtca	2	18	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	119965062	119965062	C	T	SNP	HSD3B2	ENST00000369416	human	ensembl	69_37n	1	known	missense	c.938	p.P313L	0.809	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	71	0	0	52	12	18.75	-	-	-	T	119965062	C	T	119965062	3	4	108	1	0	0	0	0	1	0	0	0	7442	623	22	4	948	4	HSD3B2	1	119965062	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	6803500	119965062	129285559	7	6677										
F5	0	genome.wustl.edu	37	chr1	169510087	169510087	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aaagatctgtctcaccaaggTctggagaaagtgtcatctgg	11	8	5	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	169510087	169510087	T	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4256	p.D1419V	0.085	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	78	0	0	105	17	13.93	-	-	-	A	169510087	T	A	169510087	3	1	108	1	0	0	0	0	1	0	0	0	5385	1667	58	5	2485	5	F5	1	169510087	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	49545025	169510087	79740534	8	6678										
F5	0	genome.wustl.edu	37	chr1	169510415	169510415	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtttgtctgactgagttctgGagagagagtcatatggctga	14	5	3	5			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	169510415	169510415	G	C	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3928	p.P1310A	0.096	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	188	0	0	211	29	12.08	-	-	-	C	169510415	G	C	169510415	3	2	108	1	0	0	0	0	1	0	0	0	5385	1174	41	2	2813	2	F5	1	169510415	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	328	169510415	79740206	9	6679										
CACNA1E	0	genome.wustl.edu	37	chr1	181727244	181727244	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aatactgttgtgctgatgatGaaggtgagaggagagaggca	16	3	0	5			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	181727244	181727244	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.4491	p.M1497I	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	51	0	0	35	13	27.08	-	-	-	A	181727244	G	A	181727244	3	1	108	1	0	0	0	0	1	0	0	0	2567	1290	45	2	4613	2	CACNA1E	1	181727244	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	12216829	181727244	67523377	10	6680										
AIDA	0	genome.wustl.edu	37	chr1	222885594	222885594	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	accagctggccccaagagtcGaagtcggcgcctctcctaaa	10	15	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	222885594	222885594	G	A	SNP	AIDA	ENST00000340020	human	ensembl	69_37n	-1	known	silent	c.66	p.F22	1.000	pfam_AIDA,superfamily_AIDA_N	pfam_AIDA,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063	42	0	0	39	9	18.75	-	-	-	A	222885594	G	A	222885594	2	1	108	1	0	0	0	0	0	0	0	1	423	1049	37	1		1	AIDA	1	222885594	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	41158350	222885594	26365027	11	6681										
CEP170	0	genome.wustl.edu	37	chr1	243333040	243333040	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aaacccaacgtttgcttccaGatgaagatgtgccttcctaa	7	11	0	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	1	243333040	243333040	G	C	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.1733	p.S578C	0.995	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	54	0	0	57	8	12.31	-	-	-	C	243333040	G	C	243333040	3	2	108	1	0	0	0	0	1	0	0	0	3279	942	33	2	3087	2	CEP170	1	243333040	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	20447446	243333040	5917581	12	6682										
PEX13	0	genome.wustl.edu	37	chr2	61258835	61258835	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgttcagcaagctgaagaaaGcagcaggggtgcatttcagt	13	7	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	2	61258835	61258835	G	C	SNP	PEX13	ENST00000295030	human	ensembl	69_37n	1	known	missense	c.374	p.S125T	1.000	pfam_Peroxin-13_N	pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PEX13	HGNC	ENSG00000162928	56	0	0	58	10	14.71	-	-	-	C	61258835	G	C	61258835	3	2	108	1	0	0	0	0	1	0	0	0	11815	971	34	4	380	4	PEX13	2	61258835	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		61258835	181940538	13	6683										
ARHGAP15	0	genome.wustl.edu	37	chr2	144381782	144381782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgaagatgtttttccgggagCtgcctgagccgctcttccct	11	12	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	2	144381782	144381782	C	T	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	silent	c.1084	p.L362	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	65	0	0	40	18	31.03	-	-	-	T	144381782	C	T	144381782	2	4	108	1	0	0	0	0	0	0	0	1	868	796	28	4		4	ARHGAP15	2	144381782	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	83122947	144381782	98817591	14	6684										
ABCA12	0	genome.wustl.edu	37	chr2	215896643	215896643	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gaagtaataatttttatataGgtaaacatttaacatgtttg	6	2	0	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	2	215896643	215896643	G	A	SNP	ABCA12	ENST00000389661	human	ensembl	69_37n	-1	known	silent	c.9	p.T3	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	54	0	0	47	7	12.96	-	-	-	A	215896643	G	A	215896643	2	1	108	1	0	0	0	0	0	0	0	1	30	987	35	4		4	ABCA12	2	215896643	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	71514861	215896643	27302730	15	6685										
ING5	0	genome.wustl.edu	37	chr2	242648663	242648663	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	agattgacatcctggctgcaGagtacatctccacggtgaag	11	10	1	4			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	2	242648663	242648663	G	C	SNP	ING5	ENST00000313552	human	ensembl	69_37n	1	known	missense	c.142	p.E48Q	0.994	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING5	HGNC	ENSG00000168395	53	0	0	51	11	17.74	-	-	-	C	242648663	G	C	242648663	3	2	108	1	0	0	0	0	1	0	0	0	7793	943	33	2	152	2	ING5	2	242648663	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	26752020	242648663	550710	16	6686										
HRH1	0	genome.wustl.edu	37	chr3	11301539	11301539	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gatgctggtggtggatctgtCttgaagtcaccatcccaaac	11	10	3	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	11301539	11301539	C	G	SNP	HRH1	ENST00000397056	human	ensembl	69_37n	1	known	silent	c.816	p.V272	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H1_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH1	HGNC	ENSG00000196639	14	0	0	14	4	22.22	-	-	-	G	11301539	C	G	11301539	2	3	108	1	0	0	0	0	0	0	0	1	7406	900	32	2		2	HRH1	3	11301539	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		11301539	186720891	17	6687										
SH3BP5	0	genome.wustl.edu	37	chr3	15297790	15297790	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tttgtcacttgttttattctCtgccccttctgccctgtctc	5	14	4	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	15297790	15297790	C	G	SNP	SH3BP5	ENST00000383791	human	ensembl	69_37n	-1	known	missense	c.1171	p.E391Q	1.000	NULL	pfam_SH3-bd_5	-	no_errors	SH3BP5	HGNC	ENSG00000131370	138	0	0	124	31	20	-	-	-	G	15297790	C	G	15297790	3	3	108	1	0	0	0	0	1	0	0	0	14335	922	32	2	200	2	SH3BP5	3	15297790	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	3996251	15297790	182724640	18	6688										
DOCK3	0	genome.wustl.edu	37	chr3	51378757	51378757	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tccactacccatcgcagacaGagtggcagcggaaggaggga	14	11	0	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	51378757	51378757	G	C	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.3856	p.E1286Q	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	68	0	0	27	11	28.95	-	-	-	C	51378757	G	C	51378757	3	2	108	1	0	0	0	0	1	0	0	0	4723	943	33	2	4006	2	DOCK3	3	51378757	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	36080967	51378757	146643673	19	6689										
VPRBP	0	genome.wustl.edu	37	chr3	51464977	51464977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	catttccacaatctgttcatGagtatatgagcatgcctata	6	9	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	51464977	51464977	G	A	SNP	VPRBP	ENST00000423656	human	ensembl	69_37n	-1	known	missense	c.406	p.H136Y	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_start_codon	VPRBP	HGNC	ENSG00000145041	26	0	0	14	6	30	-	-	-	A	51464977	G	A	51464977	3	1	108	1	0	0	0	0	1	0	0	0	17282	1290	45	2	2882	2	VPRBP	3	51464977	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	86220	51464977	146557453	20	6690										
MGLL	0	genome.wustl.edu	37	chr3	127434724	127434724	+	Nonstop_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gacgtggaatccaaaactttAacattcttgatgccttttcc	6	10	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	127434724	127434724	A	T	SNP	MGLL	ENST00000496306	human	ensembl	69_37n	-1	novel	nonstop	c.169	p.*57K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGLL	HGNC	ENSG00000074416	43	0	0	34	7	17.07	-	-	-	T	127434724	A	T	127434724	4	4	108	1	0	0	0	0	0	0	0	0	9627	377	13	5		5	MGLL	3	127434724	Nonstop_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	75969747	127434724	70587706	21	6691										
SAMD7	0	genome.wustl.edu	37	chr3	169644815	169644815	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gccaacacctgtggagagctCgagcccacccataggaaacc	10	15	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	169644815	169644815	C	G	SNP	SAMD7	ENST00000335556	human	ensembl	69_37n	1	known	silent	c.765	p.L255	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD7	HGNC	ENSG00000187033	35	0	0	17	6	26.09	-	-	-	G	169644815	C	G	169644815	2	3	108	1	0	0	0	0	0	0	0	1	13910	871	31	3		3	SAMD7	3	169644815	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	42210091	169644815	28377615	22	6692										
YEATS2	0	genome.wustl.edu	37	chr3	183446539	183446539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctcataagtggatggtatatGtccgagggtcccgtagagaa	13	7	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	183446539	183446539	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.712	p.V238I	1.000	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	46	0	0	27	9	25	-	-	-	A	183446539	G	A	183446539	3	1	108	1	0	0	0	0	1	0	0	0	17569	1377	48	4	734	4	YEATS2	3	183446539	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	13801724	183446539	14575891	23	6693										
MUC4	0	genome.wustl.edu	37	chr3	195538696	195538696	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtgcccccttcatggctgcgGcaaaagtccccctggctccc	10	18	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	3	195538696	195538696	G	A	SNP	MUC4	ENST00000478685	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC4	HGNC	ENSG00000145113	26	0	0	20	4	16.67	-	-	-	A	195538696	G	A	195538696	1	1	108	0	1	0	0	0	0	0	0	0	10050	1218	42	4		4	MUC4	3	195538696	RNA	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	12092157	195538696	2483734	24	6694										
SORCS2	0	genome.wustl.edu	37	chr4	7730093	7730093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccagatcaatttcaagtcatGcctctgcagttttccaagga	7	11	4	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	4	7730093	7730093	G	A	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	1	known	missense	c.2886	p.M962I	0.999	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	28	0	0	20	8	28.57	-	-	-	A	7730093	G	A	7730093	3	1	108	1	0	0	0	0	1	0	0	0	15020	1319	46	4	2972	4	SORCS2	4	7730093	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		7730093	183424183	25	6695										
PDHA2	0	genome.wustl.edu	37	chr4	96761627	96761627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgaggccggcataaacccctCggatcacgtcattacatcct	8	14	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	4	96761627	96761627	C	T	SNP	PDHA2	ENST00000295266	human	ensembl	69_37n	1	known	missense	c.326	p.S109L	0.794	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114	89	0	0	61	17	21.79	-	-	-	T	96761627	C	T	96761627	3	4	108	1	0	0	0	0	1	0	0	0	11738	893	31	1	328	1	PDHA2	4	96761627	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	89031534	96761627	94392649	26	6696										
CENPE	0	genome.wustl.edu	37	chr4	104057412	104057412	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gagaggtttgctttaactctCattgaaagctctttttggaa	9	6	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	4	104057412	104057412	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.6408	p.M2136I	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	84	0	0	39	33	45.83	-	-	-	G	104057412	C	G	104057412	3	3	108	1	0	0	0	0	1	0	0	0	3259	826	29	2	1737	2	CENPE	4	104057412	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	7295785	104057412	87096864	27	6697										
TMEM184C	0	genome.wustl.edu	37	chr4	148550836	148550836	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggttataataaacaacatgtCacagttggtaagtaaaatgt	8	4	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	4	148550836	148550836	C	T	SNP	TMEM184C	ENST00000296582	human	ensembl	69_37n	1	known	missense	c.659	p.S220L	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184C	HGNC	ENSG00000164168	36	0	0	36	4	10	-	-	-	T	148550836	C	T	148550836	3	4	108	1	0	0	0	0	1	0	0	0	16201	838	29	2	681	2	TMEM184C	4	148550836	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	44493424	148550836	42603440	28	6698										
SH3D19	0	genome.wustl.edu	37	chr4	152054357	152054357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctcatccttctgctctccaaTatattcaaaccgagcaacac	3	15	4	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	4	152054357	152054357	T	C	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.1747	p.I583V	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	25	0	0	18	3	14.29	-	-	-	C	152054357	T	C	152054357	3	2	108	1	0	0	0	0	1	0	0	0	14337	1406	49	5	645	5	SH3D19	4	152054357	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	3503521	152054357	39099919	29	6699										
WDR36	0	genome.wustl.edu	37	chr5	110446555	110446555	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgacagttacaactggtagtGaaggattactcaaattctgg	10	6	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	5	110446555	110446555	G	T	SNP	WDR36	ENST00000506538	human	ensembl	69_37n	1	known	nonsense	c.1678	p.E560*	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	32	0	0	36	4	10	-	-	-	T	110446555	G	T	110446555	4	4	108	1	0	0	0	0	0	1	0	0	17387	1291	45	2	1732	2	WDR36	5	110446555	Nonsense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		110446555	70468705	30	6700										
MARCH3	0	genome.wustl.edu	37	chr5	126213929	126213929	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cgacagtgagtgcaatcagtCcgacggcttccagccgacta	11	13	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	5	126213929	126213929	C	G	SNP	MARCH3	ENST00000308660	human	ensembl	69_37n	-1	known	missense	c.551	p.G184A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH3	HGNC	ENSG00000173926	36	0	0	21	10	32.26	-	-	-	G	126213929	C	G	126213929	3	3	108	1	0	0	0	0	1	0	0	0	9373	855	30	2	218	2	MARCH3	5	126213929	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	15767374	126213929	54701331	31	6701										
FAM71B	0	genome.wustl.edu	37	chr5	156589753	156589753	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gttcctgagttgttctcgacTcctttttggtggagctgtgg	13	8	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	5	156589753	156589753	T	A	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.1523	p.E508V	0.978	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	170	0	0	104	54	34.18	-	-	-	A	156589753	T	A	156589753	3	1	108	1	0	0	0	0	1	0	0	0	5653	1551	54	5	298	5	FAM71B	5	156589753	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	30375824	156589753	24325507	32	6702										
PDLIM7	0	genome.wustl.edu	37	chr5	176917060	176917060	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acgaggcagggctcccgcttCtgaggcagctcctggggttc	15	13	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	5	176917060	176917060	C	A	SNP	PDLIM7	ENST00000505074	human	ensembl	69_37n	-1	novel	nonsense	c.613	p.E205*	0.007	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_stop_codon	PDLIM7	HGNC	ENSG00000196923	48	0	0	37	5	11.9	-	-	-	A	176917060	C	A	176917060	4	1	108	1	0	0	0	0	0	1	0	0	11757	928	32	2		2	PDLIM7	5	176917060	Nonsense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	20327307	176917060	3998200	33	6703										
DSP	0	genome.wustl.edu	37	chr6	7567658	7567658	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aagtgcattgatgttcatctGaaagaaaatgctgcctactt	8	7	2	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	7567658	7567658	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	silent	c.1116	p.L372	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	56	0	0	58	17	22.67	-	-	-	A	7567658	G	A	7567658	2	1	108	1	0	0	0	0	0	0	0	1	4816	1277	45	2		2	DSP	6	7567658	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		7567658	163547409	34	6704										
HIVEP1	0	genome.wustl.edu	37	chr6	12161680	12161680	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgtttttattagatgaaaaaCagagattcagttatgagcga	9	3	1	4			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	12161680	12161680	C	G	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.6496	p.Q2166E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	13	0	0	23	9	27.27	-	-	-	G	12161680	C	G	12161680	3	3	108	1	0	0	0	0	1	0	0	0	7237	479	17	4	6522	4	HIVEP1	6	12161680	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	4594022	12161680	158953387	35	6705										
NOTCH4	0	genome.wustl.edu	37	chr6	32187943	32187943	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aggtcctggtggcaggtgggCcccgaatagccaggctgaca	16	11	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	32187943	32187943	C	A	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	silent	c.1278	p.G426	0.991	smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	58	0	0	39	9	18.75	-	-	-	A	32187943	C	A	32187943	2	1	108	1	0	0	0	0	0	0	0	1	10623	726	26	4		4	NOTCH4	6	32187943	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	20026263	32187943	138927124	36	6706										
ITPR3	0	genome.wustl.edu	37	chr6	33646572	33646572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgcacaccgtcattaaggccGagggcaagtacgtcaagaag	12	10	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	33646572	33646572	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.3928	p.E1310K	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	37	0	0	15	10	40	-	-	-	A	33646572	G	A	33646572	3	1	108	1	0	0	0	0	1	0	0	0	7976	1059	37	1	4046	1	ITPR3	6	33646572	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	1458629	33646572	137468495	37	6707										
ZNF318	0	genome.wustl.edu	37	chr6	43325259	43325259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggcctcccggctcctttcttCagatcgtatggagtagcctt	10	13	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	43325259	43325259	C	G	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.793	p.E265Q	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	77	0	0	81	17	17	-	-	-	G	43325259	C	G	43325259	3	3	108	1	0	0	0	0	1	0	0	0	17932	835	29	2	6078	2	ZNF318	6	43325259	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	9678687	43325259	127789808	38	6708										
PHF3	0	genome.wustl.edu	37	chr6	64421231	64421231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtgccacagataaaattccaCaccctcttgtgccttttgat	6	12	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	64421231	64421231	C	T	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.3970	p.H1324Y	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	49	0	0	42	6	12.5	-	-	-	T	64421231	C	T	64421231	3	4	108	1	0	0	0	0	1	0	0	0	11910	478	17	4	4024	4	PHF3	6	64421231	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	21095972	64421231	106693836	39	6709										
BAI3	0	genome.wustl.edu	37	chr6	70071070	70071070	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	catagtccatcctcaagaaaGaatgatggaaagtgactata	8	7	1	4			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	70071070	70071070	G	C	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.3905	p.R1302T	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	20	0	0	22	18	45	-	-	-	C	70071070	G	C	70071070	3	2	108	1	0	0	0	0	1	0	0	0	1304	942	33	2	4011	2	BAI3	6	70071070	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	5649839	70071070	101043997	40	6710										
DOPEY1	0	genome.wustl.edu	37	chr6	83834448	83834448	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acactgcatgtgagacttcaGattggacctggagatagtaa	11	7	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	83834448	83834448	G	C	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.1365	p.Q455H	0.995	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	44	0	0	49	9	15.52	-	-	-	C	83834448	G	C	83834448	3	2	108	1	0	0	0	0	1	0	0	0	4742	933	33	2	1407	2	DOPEY1	6	83834448	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	13763378	83834448	87280619	41	6711										
CASP8AP2	0	genome.wustl.edu	37	chr6	90566808	90566808	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tttgtggtgttttagaatttCagcttaataaacgaaaacca	7	5	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	90566808	90566808	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	85	0	0	61	16	20.51	-	-	-	T	90566808	C	T	90566808	1	4	108	0	1	0	0	0	0	0	0	0	2703	825	29	2		2	CASP8AP2	6	90566808	RNA	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	6732360	90566808	80548259	42	6712										
CCR6	0	genome.wustl.edu	37	chr6	167550687	167550687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gcttttattgggcagaagttCagaaactactttctgaagat	9	6	2	4			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	6	167550687	167550687	C	G	SNP	CCR6	ENST00000341935	human	ensembl	69_37n	1	known	missense	c.969	p.F323L	0.072	prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR6,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CXC/IL8_rcpt	-	no_errors	CCR6	HGNC	ENSG00000112486	46	0	0	31	13	29.55	-	-	-	G	167550687	C	G	167550687	3	3	108	1	0	0	0	0	1	0	0	0	2974	825	29	2	975	2	CCR6	6	167550687	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	76983879	167550687	3564380	43	6713										
FERD3L	0	genome.wustl.edu	37	chr7	19184757	19184757	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tccgcgctcctcttcctcctCctcttctccgtccccctggt	5	22	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	19184757	19184757	C	A	SNP	FERD3L	ENST00000275461	human	ensembl	69_37n	-1	known	nonsense	c.229	p.E77*	0.930	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FERD3L	HGNC	ENSG00000146618	18	0	0	29	7	18.92	-	-	-	A	19184757	C	A	19184757	4	1	108	1	0	0	0	0	0	1	0	0	5862	864	30	2	275	2	FERD3L	7	19184757	Nonsense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		19184757	139953906	44	6714										
GPNMB	0	genome.wustl.edu	37	chr7	23286540	23286540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	caagattgccacttgatgccGccaaacgtgagtaaccctta	8	12	0	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	23286540	23286540	G	A	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	missense	c.64	p.A22T	0.838	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	70	0	0	60	20	25	-	-	-	A	23286540	G	A	23286540	3	1	108	1	0	0	0	0	1	0	0	0	6670	1087	38	1	66	1	GPNMB	7	23286540	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	4101783	23286540	135852123	45	6715										
BBS9	0	genome.wustl.edu	37	chr7	33573688	33573688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	atacccaaagacacaagccaActgaagaaacatatcacctt	4	12	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	33573688	33573688	A	G	SNP	BBS9	ENST00000434373	human	ensembl	69_37n	1	known	missense	c.1120	p.T374A	0.041	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BBS9	HGNC	ENSG00000122507	49	0	0	38	6	13.64	-	-	-	G	33573688	A	G	33573688	3	3	108	1	0	0	0	0	1	0	0	0	1346	40	2	5	2499	5	BBS9	7	33573688	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	10287148	33573688	125564975	46	6716										
TPST1	0	genome.wustl.edu	37	chr7	65751514	65751514	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tcagagtggagagatctacaGaccaagtaatcaagccagtc	10	9	3	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	65751514	65751514	G	C	SNP	TPST1	ENST00000304842	human	ensembl	69_37n	1	known	missense	c.862	p.D288H	1.000	NULL	pfam_Sulfotransferase_dom	-	no_errors	TPST1	HGNC	ENSG00000169902	44	0	0	36	8	18.18	-	-	-	C	65751514	G	C	65751514	3	2	108	1	0	0	0	0	1	0	0	0	16523	942	33	2	868	2	TPST1	7	65751514	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	32177826	65751514	93387149	47	6717										
CYP3A5	0	genome.wustl.edu	37	chr7	99250398	99250398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccacggcatcataggtaggtGgtgcctggaaggaaagaaac	14	8	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	99250398	99250398	G	A	SNP	CYP3A5	ENST00000222982	human	ensembl	69_37n	-1	known	missense	c.1031	p.P344L	0.002	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A5	HGNC	ENSG00000106258	63	0	0	43	11	20.37	-	-	-	A	99250398	G	A	99250398	3	1	108	1	0	0	0	0	1	0	0	0	4211	1348	47	4	489	4	CYP3A5	7	99250398	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	33498884	99250398	59888265	48	6718										
CCDC136	0	genome.wustl.edu	37	chr7	128452016	128452016	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tggaagaaatgcagctgcttCaagtccagtccccttctata	8	11	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	7	128452016	128452016	C	G	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.2191	p.Q731E	0.586	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	24	0	0	27	6	18.18	-	-	-	G	128452016	C	G	128452016	3	3	108	1	0	0	0	0	1	0	0	0	2795	827	29	2	2241	2	CCDC136	7	128452016	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	29201618	128452016	30686647	49	6719										
POTEA	0	genome.wustl.edu	37	chr8	43218150	43218150	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	catgaaaatagcatgatgcaGgaagaaattgccatgctaag	10	6	0	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	8	43218150	43218150	G	A	SNP	POTEA	ENST00000522175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	35	0	0	53	16	23.19	-	-	-	A	43218150	G	A	43218150	1	1	108	0	1	0	0	0	0	0	0	0	12335	1015	35	4		4	POTEA	8	43218150	RNA	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		43218150	103145872	50	6720										
COL22A1	0	genome.wustl.edu	37	chr8	139647307	139647307	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cctggaactccaggatgaccCtaggaaaacacaagatgcaa	9	11	0	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	8	139647307	139647307	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	splice_site	c.3556-1	e48-1	1.000	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436	34	0	0	44	15	25.42	-	-	-	A	139647307	C	A	139647307	5	1	108	1	0	0	0	0	0	0	1	0	3711	695	24	4	1393	4	COL22A1	8	139647307	Splice_Site	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	96429157	139647307	6716715	51	6721										
KDM4C	0	genome.wustl.edu	37	chr9	7169948	7169948	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgaattccttgtcctcacctCatgtttcccaagcccagcag	6	15	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	9	7169948	7169948	C	G	SNP	KDM4C	ENST00000381306	human	ensembl	69_37n	1	known	missense	c.3052	p.H1018D	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	43	0	0	27	10	27.03	-	-	-	G	7169948	C	G	7169948	3	3	108	1	0	0	0	0	1	0	0	0	8184	826	29	2	3222	2	KDM4C	9	7169948	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		7169948	134043483	52	6722										
IFNA7	0	genome.wustl.edu	37	chr9	21201849	21201849	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aagttcagtggaaaatttttCtaggaggctctgttcccaag	10	7	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	9	21201849	21201849	C	G	SNP	IFNA7	ENST00000239347	human	ensembl	69_37n	-1	known	missense	c.316	p.E106Q	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA7	HGNC	ENSG00000214042	80	0	0	72	12	14.29	-	-	-	G	21201849	C	G	21201849	3	3	108	1	0	0	0	0	1	0	0	0	7596	922	32	2	257	2	IFNA7	9	21201849	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	14031901	21201849	120011582	53	6723										
INVS	0	genome.wustl.edu	37	chr9	103055138	103055138	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggaggctggagacatctaccCtgtccgaggactttcaggta	13	10	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	9	103055138	103055138	C	A	SNP	INVS	ENST00000262457	human	ensembl	69_37n	1	known	missense	c.2599	p.L867M	0.000	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509	81	0	0	65	25	27.47	-	-	-	A	103055138	C	A	103055138	3	1	108	1	0	0	0	0	1	0	0	0	7841	680	24	4	2649	4	INVS	9	103055138	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	81853289	103055138	38158293	54	6724										
MYO3A	0	genome.wustl.edu	37	chr10	26491957	26491957	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ttttgcccagtcgttctggaCcaaaggaacatagccctagt	9	11	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	10	26491957	26491957	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.4651	p.P1551S	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	47	0	0	34	15	30.61	-	-	-	T	26491957	C	T	26491957	3	4	108	1	0	0	0	0	1	0	0	0	10148	507	18	4	4777	4	MYO3A	10	26491957	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		26491957	109042790	55	6725										
SVIL	0	genome.wustl.edu	37	chr10	29811407	29811407	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cctgtcggcgttttgatctcTccagcagcaaacatcgcaca	8	14	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	10	29811407	29811407	T	C	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	silent	c.3321	p.G1107	0.978	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	56	0	0	25	11	30.56	-	-	-	C	29811407	T	C	29811407	2	2	108	1	0	0	0	0	0	0	0	1	15512	1538	54	5		5	SVIL	10	29811407	Silent	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	3319450	29811407	105723340	56	6726										
GOT1	0	genome.wustl.edu	37	chr10	101163403	101163403	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctctctcatctaaagagaggGaccagaatcagctgtggctg	11	10	4	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	10	101163403	101163403	G	C	SNP	GOT1	ENST00000489349	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOT1	HGNC	ENSG00000120053	48	0	0	33	9	21.43	-	-	-	C	101163403	G	C	101163403	1	2	108	0	1	0	0	0	0	0	0	0	6628	1189	41	2		2	GOT1	10	101163403	RNA	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	71351996	101163403	34371344	57	6727										
IFITM2	0	genome.wustl.edu	37	chr11	308202	308202	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cgctggtcaccatgaaccacAttgtgcaaaccttctctcct	6	15	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	308202	308202	A	T	SNP	IFITM2	ENST00000399817	human	ensembl	69_37n	1	known	missense	c.10	p.I4F	0.001	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM2	HGNC	ENSG00000185201	49	0	0	35	9	20.45	-	-	-	T	308202	A	T	308202	3	4	108	1	0	0	0	0	1	0	0	0	7581	217	8	5	12	5	IFITM2	11	308202	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09		308202	134698314	58	6728										
CHST1	0	genome.wustl.edu	37	chr11	45671789	45671789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtctcggaccagctggatgaCcttgaggtttaatcgcgggt	14	9	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	45671789	45671789	C	T	SNP	CHST1	ENST00000308064	human	ensembl	69_37n	-1	known	missense	c.685	p.V229I	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264	78	0	0	35	9	20.45	-	-	-	T	45671789	C	T	45671789	3	4	108	1	0	0	0	0	1	0	0	0	3426	507	18	4	554	4	CHST1	11	45671789	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	45363587	45671789	89334727	59	6729										
PSMC3	0	genome.wustl.edu	37	chr11	47446006	47446006	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtctcctggctttagcttttCagcatccaccaacccaatca	5	15	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	47446006	47446006	C	G	SNP	PSMC3	ENST00000298852	human	ensembl	69_37n	-1	known	missense	c.427	p.E143Q	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916	63	0	0	47	22	31.88	-	-	-	G	47446006	C	G	47446006	3	3	108	1	0	0	0	0	1	0	0	0	12767	835	29	2	924	2	PSMC3	11	47446006	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	1774217	47446006	87560510	60	6730										
TMEM216	0	genome.wustl.edu	37	chr11	61165359	61165359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgctgcagacctacgtactcCgcctggaagccatcatgaat	9	13	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	61165359	61165359	C	T	SNP	TMEM216	ENST00000334888	human	ensembl	69_37n	1	known	missense	c.343	p.R115C	1.000	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM216	HGNC	ENSG00000187049	86	0	0	60	21	25.93	-	-	-	T	61165359	C	T	61165359	3	4	108	1	0	0	0	0	1	0	0	0	16234	652	23	1	357	1	TMEM216	11	61165359	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	13719353	61165359	73841157	61	6731										
AHNAK	0	genome.wustl.edu	37	chr11	62288700	62288700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cacatcacctttcactttggGacccttcaagttaaagtcaa	5	12	4	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	62288700	62288700	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.13189	p.P4397S	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	96	0	0	111	31	21.83	-	-	-	A	62288700	G	A	62288700	3	1	108	1	0	0	0	0	1	0	0	0	414	1174	41	2	4603	2	AHNAK	11	62288700	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	1123341	62288700	72717816	62	6732										
PCNXL3	0	genome.wustl.edu	37	chr11	65387069	65387069	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aggcggacccaggccattcgGagacgccacaatgcaggcag	14	13	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	65387069	65387069	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	silent	c.1767	p.R589	0.996	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	26	0	0	26	6	18.75	-	-	-	A	65387069	G	A	65387069	2	1	108	1	0	0	0	0	0	0	0	1	11666	1161	41	2		2	PCNXL3	11	65387069	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	3098369	65387069	69619447	63	6733										
BARX2	0	genome.wustl.edu	37	chr11	129312660	129312660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tggagcctgtctggagcctgCcagcaggatcccatctctcc	11	15	2	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	11	129312660	129312660	C	T	SNP	BARX2	ENST00000531946	human	ensembl	69_37n	1	putative	missense	c.53	p.A18V	0.001	smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	BARX2	HGNC	ENSG00000043039	78	0	0	37	5	11.9	-	-	-	T	129312660	C	T	129312660	3	4	108	1	0	0	0	0	1	0	0	0	1320	754	26	4		4	BARX2	11	129312660	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	63925591	129312660	5693856	64	6734										
PPFIBP1	0	genome.wustl.edu	37	chr12	27799034	27799034	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggaacggagatgtgtatcaaGaaaggctggcacgtttagaa	14	5	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	12	27799034	27799034	G	T	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	nonsense	c.310	p.E104*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	34	0	0	39	9	18.75	-	-	-	T	27799034	G	T	27799034	4	4	108	1	0	0	0	0	0	1	0	0	12386	943	33	2	320	2	PPFIBP1	12	27799034	Nonsense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		27799034	106052861	65	6735										
ARHGAP9	0	genome.wustl.edu	37	chr12	57872469	57872469	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gggaagtggaggaggctgctCcgagctagcctgagccctgc	17	11	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	12	57872469	57872469	C	G	SNP	ARHGAP9	ENST00000356411	human	ensembl	69_37n	-1	known	missense	c.388	p.E130Q	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	37	0	0	25	10	28.57	-	-	-	G	57872469	C	G	57872469	3	3	108	1	0	0	0	0	1	0	0	0	891	864	30	2	1871	2	ARHGAP9	12	57872469	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	30073435	57872469	75979426	66	6736										
LGR5	0	genome.wustl.edu	37	chr12	71978369	71978369	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctctgatgatgtcgaaaaacAgtcctgtgactcaactcaag	8	10	3	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	12	71978369	71978369	A	G	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	missense	c.2579	p.Q860R	1.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	45	0	0	35	6	14.63	-	-	-	G	71978369	A	G	71978369	3	3	108	1	0	0	0	0	1	0	0	0	8812	188	7	5	2649	5	LGR5	12	71978369	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	14105900	71978369	61873526	67	6737										
CRADD	0	genome.wustl.edu	37	chr12	94244020	94244020	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cgggctgtggaggtggacccCtcgctgctcctgcacatgtt	14	13	0	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	12	94244020	94244020	C	G	SNP	CRADD	ENST00000332896	human	ensembl	69_37n	1	known	silent	c.573	p.P191	0.965	smart_Death	pfam_CARD,pfam_Death,superfamily_DEATH-like,smart_CARD,smart_Death,pfscan_CARD,pfscan_Death	-	no_errors	CRADD	HGNC	ENSG00000169372	29	0	0	16	5	23.81	-	-	-	G	94244020	C	G	94244020	2	3	108	1	0	0	0	0	0	0	0	1	3875	668	24	4		4	CRADD	12	94244020	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	22265651	94244020	39607875	68	6738										
MYO1H	0	genome.wustl.edu	37	chr12	109839002	109839005	+	Frame_Shift_Del	DEL	GGCA	GGCA	-													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cacatcttctaccagctgctGgcaggtggcgaagaggagcg							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	GGCA	GGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	12	109839002	109839005	GGCA	-	DEL	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	frame_shift_del	c.627_630	p.A210fs	0.720:1.000:1.000:0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	75	0	0	74	9	10.84	-	-	-	-	109839005	GGCA	-	109839002	7	5	108	1	0	1	0	1	0	0	0	0	10147	1335	47	0	645	0	MYO1H	12	109839002	Frame_Shift_Del	DEL	GGCA	TCGA-A2-A4RW-01A-21D-A25Q-09	15594982	109839002	24012893	69	6739										
FAM179B	0	genome.wustl.edu	37	chr14	45496657	45496657	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aaaatatttcatcatatcttGatgttgagaatgaaaaagat	6	3	3	4			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	14	45496657	45496657	G	C	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.3484	p.D1162H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	29	0	0	23	6	20.69	-	-	-	C	45496657	G	C	45496657	3	2	108	1	0	0	0	0	1	0	0	0	5546	1290	45	2	3518	2	FAM179B	14	45496657	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		45496657	61852883	70	6740										
ADAM20	0	genome.wustl.edu	37	chr14	70990617	70990617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgttgtagtcgattattaagGttataattcttccaaataga	7	4	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	14	70990617	70990617	G	T	SNP	ADAM20	ENST00000256389	human	ensembl	69_37n	-1	known	missense	c.1008	p.N336K	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	17	0	0	13	5	27.78	-	-	-	T	70990617	G	T	70990617	3	4	108	1	0	0	0	0	1	0	0	0	242	1252	44	4	1326	4	ADAM20	14	70990617	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	25493960	70990617	36358923	71	6741										
BCL11B	0	genome.wustl.edu	37	chr14	99723900	99723900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cttggatcccgatctccaccGgctcggacactttcctgagc	9	16	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	14	99723900	99723900	G	A	SNP	BCL11B	ENST00000357195	human	ensembl	69_37n	-1	known	missense	c.335	p.P112L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152	94	0	0	62	13	17.33	-	-	-	A	99723900	G	A	99723900	3	1	108	1	0	0	0	0	1	0	0	0	1368	1116	39	1	2361	1	BCL11B	14	99723900	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	28733283	99723900	7625640	72	6742										
RASGRF1	0	genome.wustl.edu	37	chr15	79277356	79277356	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctcctgcccgcacctgcttaGagactttgagccacgtcttt	8	15	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	15	79277356	79277356	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.3455	p.S1152F	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	76	0	0	82	13	13.68	-	-	-	A	79277356	G	A	79277356	3	1	108	1	0	0	0	0	1	0	0	0	13155	942	33	2	386	2	RASGRF1	15	79277356	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		79277356	23254036	73	6743										
AKAP13	0	genome.wustl.edu	37	chr15	86123427	86123427	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cacccgatgcctcccactgtGaagacccacaggctcataca	7	17	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	15	86123427	86123427	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.2128	p.E710K	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	40	0	0	30	12	28.57	-	-	-	A	86123427	G	A	86123427	3	1	108	1	0	0	0	0	1	0	0	0	449	1291	45	2	2150	2	AKAP13	15	86123427	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	6846071	86123427	16407965	74	6744										
KIF7	0	genome.wustl.edu	37	chr15	90190234	90190234	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccagcctggccgcaccagctCtaaccgcagccgcagttcca	9	19	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	15	90190234	90190234	C	T	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.1615	p.E539K	0.997	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	78	0	0	76	18	18.95	-	-	-	T	90190234	C	T	90190234	3	4	108	1	0	0	0	0	1	0	0	0	8361	922	32	2	2468	2	KIF7	15	90190234	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	4066807	90190234	12341158	75	6745										
IGF1R	0	genome.wustl.edu	37	chr15	99465386	99465386	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cctccttgcagacctgaaagGaagcggagagatgtcatgca	12	10	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	15	99465386	99465386	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	silent	c.2211	p.R737	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	33	0	0	73	10	12.05	-	-	-	A	99465386	G	A	99465386	2	1	108	1	0	0	0	0	0	0	0	1	7625	1165	41	2		2	IGF1R	15	99465386	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	9275152	99465386	3066006	76	6746										
LRRK1	0	genome.wustl.edu	37	chr15	101593547	101593547	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tcgtggcgctcatcggcatcAgcatccacccgctctgcttc	9	17	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	15	101593547	101593547	A	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.3976	p.S1326C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	36	0	0	43	13	23.21	-	-	-	T	101593547	A	T	101593547	3	4	108	1	0	0	0	0	1	0	0	0	9098	188	7	5	4074	5	LRRK1	15	101593547	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	2128161	101593547	937845	77	6747										
C16orf59	0	genome.wustl.edu	37	chr16	2510695	2510695	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tggagaggacccccttccagGtaaacctccaccacccgcct	8	18	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	16	2510695	2510695	G	C	SNP	C16orf59	ENST00000361837	human	ensembl	69_37n	1	known	splice_site	c.196+1	e3+1	1.000	-	-	-	no_errors	C16orf59	HGNC	ENSG00000162062	87	0	0	54	14	20.59	-	-	-	C	2510695	G	C	2510695	5	2	108	1	0	0	0	0	0	0	1	0	1836	1275	44	4	207	4	C16orf59	16	2510695	Splice_Site	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		2510695	87844058	78	6748										
PRSS22	0	genome.wustl.edu	37	chr16	2903953	2903953	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cctgctccccgccagtacagAtggctgcagacttccgagtc	10	16	0	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	16	2903953	2903953	A	G	SNP	PRSS22	ENST00000161006	human	ensembl	69_37n	-1	known	silent	c.630	p.H210	0.947	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS22	HGNC	ENSG00000005001	110	0	0	58	26	30.95	-	-	-	G	2903953	A	G	2903953	2	3	108	1	0	0	0	0	0	0	0	1	12699	330	12	5		5	PRSS22	16	2903953	Silent	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	393258	2903953	87450800	79	6749										
ACSM5	0	genome.wustl.edu	37	chr16	20442356	20442356	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aaaggcatgaaaatcaagtcTggatccatggggaaggcgtc	13	7	2	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	16	20442356	20442356	T	A	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	silent	c.1167	p.S389	0.991	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	92	0	0	84	18	17.65	-	-	-	A	20442356	T	A	20442356	2	1	108	1	0	0	0	0	0	0	0	1	187	1567	55	5		5	ACSM5	16	20442356	Silent	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	17538403	20442356	69912397	80	6750										
ABCC12	0	genome.wustl.edu	37	chr16	48138177	48138177	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctgcagaaagttctctgcgtGaaacggcagcctcacatcca	9	13	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	16	48138177	48138177	G	T	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.2776	p.H926N	0.993	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	53	0	0	53	11	17.19	-	-	-	T	48138177	G	T	48138177	3	4	108	1	0	0	0	0	1	0	0	0	52	1290	45	2	1343	2	ABCC12	16	48138177	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	27695821	48138177	42216576	81	6751										
SYNRG	0	genome.wustl.edu	37	chr17	35956267	35956268	+	Splice_Site	DEL	TA	TA	-													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aaaccaactaaagaagtaagTacctgcatagcaataggtcc							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	35956267	35956268	TA	0	DEL	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	splice_site_del	c.240+2_240+1	e3+2	0.997:1.000	-	-	-	no_errors	SYNRG	HGNC	ENSG00000006114	76	0	0	44	10	18.52	-	-	-	-	35956268	TA	-	35956267	8	5	108	1	0	1	0	1	0	0	1	0	15552	1653	57	0		0	SYNRG	17	35956267	Splice_Site	DEL	TA	TCGA-A2-A4RW-01A-21D-A25Q-09		35956267	45238943	82	6752										
KRT34	0	genome.wustl.edu	37	chr17	39534312	39534312	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	caaagaggatacaagcttttCaattacagcaacccttttga	6	9	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	39534312	39534312	C	G	SNP	KRT34	ENST00000394001	human	ensembl	69_37n	-1	known	nonstop	c.1310	p.*437S	0.001	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737	43	0	0	27	9	25	-	-	-	G	39534312	C	G	39534312	4	3	108	1	0	0	0	0	0	0	0	0	8524	837	29	2	4	2	KRT34	17	39534312	Nonstop_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	3578045	39534312	41660898	83	6753										
COASY	0	genome.wustl.edu	37	chr17	40714739	40714739	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acctcggcggcccggctggtGaatcacacactctatgttca	10	14	3	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	40714739	40714739	G	A	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	silent	c.186	p.V62	1.000	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	81	0	0	53	19	26.39	-	-	-	A	40714739	G	A	40714739	2	1	108	1	0	0	0	0	0	0	0	1	3682	1277	45	2		2	COASY	17	40714739	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	1180427	40714739	40480471	84	6754										
SAMD14	0	genome.wustl.edu	37	chr17	48195544	48195544	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccttgcctccgggcccatccGagccttcaccatcctccgcg	8	21	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	48195544	48195544	G	C	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.191	p.S64W	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	43	0	0	33	7	17.5	-	-	-	C	48195544	G	C	48195544	3	2	108	1	0	0	0	0	1	0	0	0	13905	1059	37	3	1182	3	SAMD14	17	48195544	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	7480805	48195544	32999666	85	6755										
TEX14	0	genome.wustl.edu	37	chr17	56647814	56647814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	atgccttaacaaggctggggGatccagccccaataaatgaa	10	10	0	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	56647814	56647814	G	A	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	missense	c.3887	p.S1296F	0.082	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	29	0	0	33	10	23.26	-	-	-	A	56647814	G	A	56647814	3	1	108	1	0	0	0	0	1	0	0	0	15873	1174	41	2	638	2	TEX14	17	56647814	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	8452270	56647814	24547396	86	6756										
BRIP1	0	genome.wustl.edu	37	chr17	59885858	59885858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tctagcaattccatgcacttCtcatttctgttgaagttacc	5	11	3	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	17	59885858	59885858	C	G	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.888	p.E296D	1.000	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	21	0	0	32	8	20	-	-	-	G	59885858	C	G	59885858	3	3	108	1	0	0	0	0	1	0	0	0	1522	912	32	2	2917	2	BRIP1	17	59885858	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	3238044	59885858	21309352	87	6757										
RIOK3	0	genome.wustl.edu	37	chr18	21057146	21057146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gttctgtattgaaataggtcTggttgatcgatgtcagtcag	12	5	4	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	18	21057146	21057146	T	C	SNP	RIOK3	ENST00000339486	human	ensembl	69_37n	1	known	missense	c.1258	p.W420R	1.000	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	-	no_errors	RIOK3	HGNC	ENSG00000101782	53	0	0	39	16	29.09	-	-	-	C	21057146	T	C	21057146	3	2	108	1	0	0	0	0	1	0	0	0	13465	1580	55	5	1300	5	RIOK3	18	21057146	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09		21057146	57020102	88	6758										
MUC16	0	genome.wustl.edu	37	chr19	9089883	9089883	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acggagactgggacaccgttCgtggccagagtcaaatctgc	13	11	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	9089883	9089883	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.1932	p.T644	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	79	0	0	61	18	22.78	-	-	-	T	9089883	C	T	9089883	2	4	108	1	0	0	0	0	0	0	0	1	10045	871	31	1		1	MUC16	19	9089883	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		9089883	50039100	89	6759										
CCDC159	0	genome.wustl.edu	37	chr19	11462756	11462756	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	cgcaggaggatgagatctcaGagaacttggtgaacattcag	13	7	2	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	11462756	11462756	G	C	SNP	CCDC159	ENST00000458408	human	ensembl	69_37n	1	known	missense	c.514	p.E172Q	0.935	NULL	NULL	-	no_errors	CCDC159	HGNC	ENSG00000183401	49	0	0	39	14	26.42	-	-	-	C	11462756	G	C	11462756	3	2	108	1	0	0	0	0	1	0	0	0	2817	943	33	2	540	2	CCDC159	19	11462756	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	2372873	11462756	47666227	90	6760										
USHBP1	0	genome.wustl.edu	37	chr19	17369072	17369072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccatggcagcctcctcttgtGccagcagcctccatgcttcc	8	18	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	17369072	17369072	G	T	SNP	USHBP1	ENST00000252597	human	ensembl	69_37n	-1	known	missense	c.1169	p.A390E	0.616	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	36	0	0	23	4	14.81	-	-	-	T	17369072	G	T	17369072	3	4	108	1	0	0	0	0	1	0	0	0	17134	1319	46	4	966	4	USHBP1	19	17369072	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	5906316	17369072	41759911	91	6761										
UNC13A	0	genome.wustl.edu	37	chr19	17750006	17750006	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	accacctggctggctcggggCgggctctggagttcttgtac	15	12	2	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	17750006	17750006	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	silent	c.3231	p.P1077	0.232	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	39	0	0	63	13	16.88	-	-	-	T	17750006	C	T	17750006	2	4	108	1	0	0	0	0	0	0	0	1	17081	755	27	1		1	UNC13A	19	17750006	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	380934	17750006	41378977	92	6762										
FXYD3	0	genome.wustl.edu	37	chr19	35612200	35612200	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acaaccccacatactgcttgGtgccaagggttcccatacag	8	14	0	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	35612200	35612200	G	C	SNP	FXYD3	ENST00000454903	human	ensembl	69_37n	1	known	missense	c.148	p.V50L	0.000	NULL	NULL	-	no_errors	FXYD3	HGNC	ENSG00000089356	43	0	0	37	13	26	-	-	-	C	35612200	G	C	35612200	3	2	108	1	0	0	0	0	1	0	0	0	6168	1261	44	4	337	4	FXYD3	19	35612200	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	17862194	35612200	23516783	93	6763										
ZBTB32	0	genome.wustl.edu	37	chr19	36205602	36205602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acagctagcagccaggctccGgccagcactctgtgatactc	10	15	1	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	36205602	36205602	G	A	SNP	ZBTB32	ENST00000262630	human	ensembl	69_37n	1	known	missense	c.74	p.R25Q	0.983	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590	54	0	0	37	5	11.9	-	-	-	A	36205602	G	A	36205602	3	1	108	1	0	0	0	0	1	0	0	0	17631	1116	39	1	76	1	ZBTB32	19	36205602	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	593402	36205602	22923381	94	6764										
PSG2	0	genome.wustl.edu	37	chr19	43579653	43579653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctgaaacctatgagtcatagGgaggctctgaccattcatcc	9	11	3	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	43579653	43579653	G	A	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	missense	c.562	p.P188S	0.007	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG2	HGNC	ENSG00000242221	163	0	0	142	49	25.65	-	-	-	A	43579653	G	A	43579653	3	1	108	1	0	0	0	0	1	0	0	0	12735	1232	43	4	457	4	PSG2	19	43579653	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	7374051	43579653	15549330	95	6765										
NLRP12	0	genome.wustl.edu	37	chr19	54308693	54308693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	aggctgagctggagatgcggCacctcttcagcctggggtgg	17	10	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	19	54308693	54308693	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	missense	c.2258	p.C753Y	0.900	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	37	0	0	26	7	21.21	-	-	-	T	54308693	C	T	54308693	3	4	108	1	0	0	0	0	1	0	0	0	10546	710	25	4	954	4	NLRP12	19	54308693	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	10729040	54308693	4820290	96	6766										
SEL1L2	0	genome.wustl.edu	37	chr20	13912405	13912405	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgataaatattgtttgatttCgttcactgatacctacaaag	6	6	1	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	20	13912405	13912405	C	A	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	nonsense	c.127	p.E43*	0.001	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	43	0	0	27	7	20.59	-	-	-	A	13912405	C	A	13912405	4	1	108	1	0	0	0	0	0	1	0	0	14099	893	31	3	2011	3	SEL1L2	20	13912405	Nonsense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09		13912405	49113115	97	6767										
LAMA5	0	genome.wustl.edu	37	chr20	60928253	60928253	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ggaccgctccagcacccagaGgtccggccggggtgagttgg	17	13	0	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	20	60928253	60928253	G	C	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.505	p.L169V	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	126	0	0	66	27	29.03	-	-	-	C	60928253	G	C	60928253	3	2	108	1	0	0	0	0	1	0	0	0	8663	1000	35	4	10894	4	LAMA5	20	60928253	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	47015848	60928253	2097267	98	6768										
NRIP1	0	genome.wustl.edu	37	chr21	16338244	16338244	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gtaagtcatcacaaggctcaGattttattttcaccatcagt	6	9	5	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	21	16338244	16338244	G	C	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.2270	p.S757C	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	57	0	0	57	13	18.57	-	-	-	C	16338244	G	C	16338244	3	2	108	1	0	0	0	0	1	0	0	0	10725	942	33	2	1210	2	NRIP1	21	16338244	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		16338244	31791651	99	6769										
NRIP1	0	genome.wustl.edu	37	chr21	16338289	16338289	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gttcacttaaagctctctctGagtgttcctgagtactttca	7	10	4	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	21	16338289	16338289	G	C	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	nonsense	c.2225	p.S742*	0.082	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	36	0	0	41	13	24.07	-	-	-	C	16338289	G	C	16338289	4	2	108	1	0	0	0	0	0	1	0	0	10725	1294	45	2	1255	2	NRIP1	21	16338289	Nonsense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	45	16338289	31791606	100	6770										
TIAM1	0	genome.wustl.edu	37	chr21	32639231	32639231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	agtgtgcttgcgccccaggcTggcatgcttttctccataaa	10	12	1	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	21	32639231	32639231	T	C	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.58	p.S20G	0.996	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	48	0	0	30	10	25	-	-	-	C	32639231	T	C	32639231	3	2	108	1	0	0	0	0	1	0	0	0	15985	1580	55	5	4817	5	TIAM1	21	32639231	Missense_Mutation	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	16300942	32639231	15490664	101	6771										
BCR	0	genome.wustl.edu	37	chr22	23658007	23658007	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gagacagggtgaagggagtgGtttttatgaacttaacttag	14	3	0	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	22	23658007	23658007	G	A	SNP	BCR	ENST00000436990	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	25	0	0	21	4	16	-	-	-	A	23658007	G	A	23658007	1	1	108	0	1	0	0	0	0	0	0	0	1392	1276	44	4		4	BCR	22	23658007	RNA	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		23658007	27646559	102	6772										
CELSR1	0	genome.wustl.edu	37	chr22	46760558	46760558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccttcaggcggggcttgccgCtggggtcctcactgtcactc	13	15	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	22	46760558	46760558	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.8630	p.S2877N	0.001	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	34	0	0	35	8	18.6	-	-	-	T	46760558	C	T	46760558	3	4	108	1	0	0	0	0	1	0	0	0	3250	797	28	4	426	4	CELSR1	22	46760558	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	23102551	46760558	4544008	103	6773										
FRMPD4	0	genome.wustl.edu	37	chrX	12735862	12735862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	agtcctcgcacgccctggctGctaggccagcaaccgacctc	10	18	0	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	12735862	12735862	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.2917	p.A973T	0.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	33	0	0	22	9	29.03	-	-	-	A	12735862	G	A	12735862	3	1	108	1	0	0	0	0	1	0	0	0	6108	1319	46	4	2979	4	FRMPD4	23	12735862	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09		12735862	142534698	104	6774										
MAP3K15	0	genome.wustl.edu	37	chrX	19387187	19387187	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctcacctgttggtctcctgtCtgagctcacccagctggagg	11	14	4	1			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	19387187	19387187	C	G	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.3551	p.R1184T	0.008	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	104	0	0	54	10	15.62	-	-	-	G	19387187	C	G	19387187	3	3	108	1	0	0	0	0	1	0	0	0	9320	913	32	2	410	2	MAP3K15	23	19387187	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	6651325	19387187	135883373	105	6775										
ZFX	0	genome.wustl.edu	37	chrX	24197366	24197366	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	acaagaaactgtttttgtttCagatgttgtggattcagaca	9	5	2	3			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	24197366	24197366	C	G	SNP	ZFX	ENST00000540034	human	ensembl	69_37n	1	known	nonsense	c.242	p.S81*	1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	68	0	0	60	21	25.93	-	-	-	G	24197366	C	G	24197366	4	3	108	1	0	0	0	0	0	1	0	0	17757	838	29	2	131	2	ZFX	23	24197366	Nonsense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	4810179	24197366	131073194	106	6776										
CXorf22	0	genome.wustl.edu	37	chrX	35993902	35993902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	gctagtattgagaccacgagGcttcttcatgaaaacatgtt	9	8	2	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	35993902	35993902	G	A	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.2585	p.G862D	0.039	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	45	0	0	45	13	22.41	-	-	-	A	35993902	G	A	35993902	3	1	108	1	0	0	0	0	1	0	0	0	4133	1203	42	4	2643	4	CXorf22	23	35993902	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	11796536	35993902	119276658	107	6777										
GSPT2	0	genome.wustl.edu	37	chrX	51487622	51487622	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tttgtcccaaatatgattggTggtgcttctcaagctgattt	9	7	1	2			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	51487622	51487622	T	A	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	silent	c.900	p.G300	0.991	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	43	0	0	45	5	10	-	-	-	A	51487622	T	A	51487622	2	1	108	1	0	0	0	0	0	0	0	1	6878	1683	59	5		5	GSPT2	23	51487622	Silent	SNP	T	TCGA-A2-A4RW-01A-21D-A25Q-09	15493720	51487622	103782938	108	6778										
NOX1	0	genome.wustl.edu	37	chrX	100117162	100117162	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tgcccgtagggctcttacctCagggggatgcccttcaaact	11	13	3	0			TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	100117162	100117162	C	G	SNP	NOX1	ENST00000372966	human	ensembl	69_37n	-1	known	missense	c.802	p.E268Q	1.000	NULL	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952	40	0	0	27	14	34.15	-	-	-	G	100117162	C	G	100117162	3	3	108	1	0	0	0	0	1	0	0	0	10628	835	29	2	920	2	NOX1	23	100117162	Missense_Mutation	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	48629540	100117162	55153398	109	6779										
FATE1	0	genome.wustl.edu	37	chrX	150884668	150884668	+	Missense_Mutation	SNP	G	G	T													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	actgaatcatggacgccaagGggaaaaccaagagcacctgg							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	150884668	150884668	G	T	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	missense	c.77	p.G26V	0.000	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	49	0	0	21	6	22.22	-	-	-	T	150884668	G	T	150884668	3	4	108	1	0	0	0	0	1	0	0	0	5739	1232	43	4	79	4	FATE1	23	150884668	Missense_Mutation	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	50767506	150884668	4385892	110	6780	52	2								
FATE1	0	genome.wustl.edu	37	chrX	150884669	150884669	+	Silent	SNP	G	G	T													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ctgaatcatggacgccaaggGgaaaaccaagagcacctggt							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	150884669	150884669	G	T	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	silent	c.78	p.G26	0.000	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	48	0	0	20	5	20	-	-	-	T	150884669	G	T	150884669	2	4	108	1	0	0	0	0	0	0	0	1	5739	1219	43	4		4	FATE1	23	150884669	Silent	SNP	G	TCGA-A2-A4RW-01A-21D-A25Q-09	1	150884669	4385891	111	6781	52	2								
GABRA3	0	genome.wustl.edu	37	chrX	151358349	151358349	+	Silent	SNP	C	C	A													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	tccatggccgtcgcatatgcCactttaggtaaggaatttct							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	151358349	151358349	C	A	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	silent	c.996	p.V332	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	51	0	0	39	5	11.36	-	-	-	A	151358349	C	A	151358349	2	1	108	1	0	0	0	0	0	0	0	1	6211	581	21	4		4	GABRA3	23	151358349	Silent	SNP	C	TCGA-A2-A4RW-01A-21D-A25Q-09	473680	151358349	3912211	112	6782	53	2								
GABRA3	0	genome.wustl.edu	37	chrX	151358350	151358350	+	Missense_Mutation	SNP	A	A	C													0.315315315315315	35	1.44885968113274e-08	2.94174208144796	4.37058823529412	1.71701680672269	0.0059225966445677	0.0981745681082578	23	ccatggccgtcgcatatgccActttaggtaaggaatttctg							TCGA-A2-A4RW-01A-21D-A25Q-09	TCGA-A2-A4RW-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d0a7623-cc2d-443f-9798-df420fc50d17	abd9cb0d-01de-478e-8dd7-b8b93e099f58	X	151358350	151358350	A	C	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.995	p.V332G	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	52	0	0	38	5	11.63	-	-	-	C	151358350	A	C	151358350	3	2	108	1	0	0	0	0	1	0	0	0	6211	159	6	5	491	5	GABRA3	23	151358350	Missense_Mutation	SNP	A	TCGA-A2-A4RW-01A-21D-A25Q-09	1	151358350	3912210	113	6783	53	2								
CLCA4	0	genome.wustl.edu	37	chr1	87045231	87045231	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	atgaggataagattattcttAcatggacagcaccaggagat	10	6	1	3			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	87045231	87045231	A	G	SNP	CLCA4	ENST00000370563	human	ensembl	69_37n	1	known	missense	c.2317	p.T773A	0.922	superfamily_Fibronectin_type3,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602	39	0	0	47	12	20.34	-	-	-	G	87045231	A	G	87045231	3	3	109	1	0	0	0	0	1	0	0	0	3489	391	14	5	2367	5	CLCA4	1	87045231	Missense_Mutation	SNP	A	TCGA-A2-A4RX-01A-11D-A25Q-09		87045231	162205390	1	6784										
TARS2	0	genome.wustl.edu	37	chr1	150479466	150479466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	atcgtcgccttggggagtggGacttgcctgaggctgtgcag	17	9	0	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	150479466	150479466	G	A	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.2083	p.D695N	0.003	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	51	0	0	40	18	31.03	-	-	-	A	150479466	G	A	150479466	3	1	109	1	0	0	0	0	1	0	0	0	15652	1174	41	2	2153	2	TARS2	1	150479466	Missense_Mutation	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09	63434235	150479466	98771155	2	6785										
FLAD1	0	genome.wustl.edu	37	chr1	154960671	154960671	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	gagtctcagttgtacctgatGaggtagccaccattgcagct	11	10	1	2			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	154960671	154960671	G	A	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	missense	c.463	p.E155K	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	145	0	0	119	41	25.62	-	-	-	A	154960671	G	A	154960671	3	1	109	1	0	0	0	0	1	0	0	0	5966	1291	45	2	544	2	FLAD1	1	154960671	Missense_Mutation	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09	4481205	154960671	94289950	3	6786										
LMNA	0	genome.wustl.edu	37	chr1	156108280	156108280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	gccttgtctcccttcccaggGctcccactgcagcagctcgg	10	18	1	0			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	156108280	156108280	G	T	SNP	LMNA	ENST00000368300	human	ensembl	69_37n	1	known	missense	c.1700	p.G567V	1.000	NULL	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	23	0	0	34	11	24.44	-	-	-	T	156108280	G	T	156108280	3	4	109	1	0	0	0	0	1	0	0	0	8904	1217	42	4	1763	4	LMNA	1	156108280	Missense_Mutation	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09	1147609	156108280	93142341	4	6787										
APOA2	0	genome.wustl.edu	37	chr1	161192845	161192846	+	RNA	INS	-	-	CA													0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	tccgaaccaaagctcctgccINScacacacacacacacacaca							TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	161192845	161192846	-	CA	INS	APOA2	ENST00000481413	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006:0.011	-	-	-	no_errors	APOA2	HGNC	ENSG00000158874	18	0	0	34	8	19.05	-	-	-	CA	161192846	-	CA	161192845	6	5	109	0	1	1	1	0	0	0	0	0	784	638	22	0		0	APOA2	1	161192845	RNA	INS	-	TCGA-A2-A4RX-01A-11D-A25Q-09	5084565	161192845	88057776	5	6788										
BATF3	0	genome.wustl.edu	37	chr1	212870819	212870819	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	actggaaagctgggtgggggTggggggcggtggagagatct	23	4	1	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	1	212870819	212870819	T	G	SNP	BATF3	ENST00000478275	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BATF3	HGNC	ENSG00000123685	19	0	0	4	8	66.67	-	-	-	G	212870819	T	G	212870819	1	3	109	0	1	0	0	0	0	0	0	0	1331	1711	59	5		5	BATF3	1	212870819	RNA	SNP	T	TCGA-A2-A4RX-01A-11D-A25Q-09	51677974	212870819	36379802	6	6789										
SUCLG1	0	genome.wustl.edu	37	chr2	84650707	84650707	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	taatacaatgtggtgaaaacAtcttaattcaggacatcttc	6	7	3	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	2	84650707	84650707	A	G	SNP	SUCLG1	ENST00000491123	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SUCLG1	HGNC	ENSG00000163541	22	0	0	37	6	13.95	-	-	-	G	84650707	A	G	84650707	1	3	109	0	1	0	0	0	0	0	0	0	15455	232	8	5		5	SUCLG1	2	84650707	RNA	SNP	A	TCGA-A2-A4RX-01A-11D-A25Q-09		84650707	158548666	7	6790										
COL6A5	0	genome.wustl.edu	37	chr3	130159257	130159257	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	tccaggagaaagatgggtacAgtaaaaacagagtttgattt	11	4	0	4			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	3	130159257	130159257	A	G	SNP	COL6A5	ENST00000512836	human	ensembl	69_37n	1	putative	missense	c.829	p.S277G	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL6A5	HGNC	ENSG00000172752	50	0	0	54	13	19.4	-	-	-	G	130159257	A	G	130159257	3	3	109	1	0	0	0	0	1	0	0	0	3732	175	7	5	6209	5	COL6A5	3	130159257	Missense_Mutation	SNP	A	TCGA-A2-A4RX-01A-11D-A25Q-09		130159257	67863173	8	6791										
STAG1	0	genome.wustl.edu	37	chr3	136170958	136170958	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	cctcctctttgctaatgcttCttctgcttgtgggtcatgtc	8	12	4	0			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	3	136170958	136170958	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.1345	p.E449Q	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	187	1	0.53	151	40	20.94	-	-	-	G	136170958	C	G	136170958	3	3	109	1	0	0	0	0	1	0	0	0	15333	922	32	2	2515	2	STAG1	3	136170958	Missense_Mutation	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09	6011701	136170958	61851472	9	6792										
PIK3R1	0	genome.wustl.edu	37	chr5	67591105	67591107	+	In_Frame_Del	DEL	TAA	TAA	-													0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	gacaaacgtatgaacagcatTaaaccagaccttatccagct							TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	5	67591105	67591107	TAA	-	DEL	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_del	c.1698_1700	p.K567in_frame_del	0.993:1.000:1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	57	0	0	73	16	17.98	-	-	-	-	67591107	TAA	-	67591105	7	5	109	1	0	1	0	1	0	0	0	0	11992	1742	61	0	1874	0	PIK3R1	5	67591105	In_Frame_Del	DEL	TAA	TCGA-A2-A4RX-01A-11D-A25Q-09		67591105	113324155	10	6793										
KIAA0319	0	genome.wustl.edu	37	chr6	24596724	24596724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	gctggacaggtcacagcaagCggccgtgcagtctacgacag	14	12	2	0			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	6	24596724	24596724	C	T	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.178	p.A60T	0.996	smart_MANSC_N,pfscan_MANSC	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	24	0	0	35	13	27.08	-	-	-	T	24596724	C	T	24596724	3	4	109	1	0	0	0	0	1	0	0	0	8220	768	27	1	3116	1	KIAA0319	6	24596724	Missense_Mutation	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09		24596724	146518343	11	6794										
ATG5	0	genome.wustl.edu	37	chr6	106633695	106633695	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	cctatgccctatatccacccCatgccaatgacgaccagtca	5	17	1	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	6	106633695	106633695	C	A	SNP	ATG5	ENST00000475645	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG5	HGNC	ENSG00000057663	8	0	0	13	4	23.53	-	-	-	A	106633695	C	A	106633695	1	1	109	0	1	0	0	0	0	0	0	0	1104	609	21	4		4	ATG5	6	106633695	RNA	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09	82036971	106633695	64481372	12	6795										
LACE1	0	genome.wustl.edu	37	chr6	108843570	108843570	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	atttcagcgcacaatttcccGactcacggaaatgcagactg	8	12	2	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	6	108843570	108843570	G	A	SNP	LACE1	ENST00000368977	human	ensembl	69_37n	1	known	missense	c.1388	p.R463Q	1.000	NULL	pfam_ATPase_AFG1-like	-	no_errors	LACE1	HGNC	ENSG00000135537	35	0	0	39	9	18.75	-	-	-	A	108843570	G	A	108843570	3	1	109	1	0	0	0	0	1	0	0	0	8649	1058	37	1	1438	1	LACE1	6	108843570	Missense_Mutation	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09	2209875	108843570	62271497	13	6796										
CENPP	0	genome.wustl.edu	37	chr9	95094596	95094596	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	ataagaaatcactccaagcaGacagaagacctaacaagcac	6	11	1	4			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	9	95094596	95094596	G	A	SNP	CENPP	ENST00000375587	human	ensembl	69_37n	1	known	silent	c.252	p.Q84	0.280	NULL	NULL	-	no_errors	CENPP	HGNC	ENSG00000188312	39	0	0	46	12	20.69	-	-	-	A	95094596	G	A	95094596	2	1	109	1	0	0	0	0	0	0	0	1	3269	933	33	2		2	CENPP	9	95094596	Silent	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09		95094596	46118835	14	6797										
PNPLA7	0	genome.wustl.edu	37	chr9	140372521	140372521	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	ccaagcaccagggcaatggcGttgcccgtcagcaccctcgc	11	17	1	0			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	9	140372521	140372521	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	silent	c.2847	p.N949	0.679	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	118	0	0	123	48	28.07	-	-	-	A	140372521	G	A	140372521	2	1	109	1	0	0	0	0	0	0	0	1	12244	1136	40	1		1	PNPLA7	9	140372521	Silent	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09	45277925	140372521	840910	15	6798										
MPEG1	0	genome.wustl.edu	37	chr11	58979531	58979531	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	ctgcaccctggagttggttcGgtttgagaggtagctcttgg	15	8	1	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	11	58979531	58979531	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	nonsense	c.808	p.R270*	0.997	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	102	0	0	106	15	12.4	-	-	-	A	58979531	G	A	58979531	4	1	109	1	0	0	0	0	0	1	0	0	9795	1124	39	1	1346	1	MPEG1	11	58979531	Nonsense_Mutation	SNP	G	TCGA-A2-A4RX-01A-11D-A25Q-09		58979531	76026985	16	6799										
SIPA1L1	0	genome.wustl.edu	37	chr14	72138262	72138262	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	attgaacaggaaacaaagagCgtggtcttcaattgttcctg	10	7	2	2			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	14	72138262	72138262	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.2682	p.S894	0.139	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	44	0	0	65	18	21.69	-	-	-	T	72138262	C	T	72138262	2	4	109	1	0	0	0	0	0	0	0	1	14418	767	27	1		1	SIPA1L1	14	72138262	Silent	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09		72138262	35211278	17	6800										
LLGL2	0	genome.wustl.edu	37	chr17	73560440	73560440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	tctgtgcctgccaggttgccCttcaccatcttccagggtgg	11	14	3	0			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	17	73560440	73560440	C	T	SNP	LLGL2	ENST00000578638	human	ensembl	69_37n	1	known	missense	c.40	p.L14F	0.980	pfam_LLGL2	pfam_LLGL2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LLGL2	HGNC	ENSG00000073350	149	0	0	114	18	13.64	-	-	-	T	73560440	C	T	73560440	3	4	109	1	0	0	0	0	1	0	0	0	8890	668	24	4	922	4	LLGL2	17	73560440	Missense_Mutation	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09		73560440	7634770	18	6801										
TPRX1	0	genome.wustl.edu	37	chr19	48305634	48305634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	tgggcctgagattgggcctgAgattgggcctgggatcgggc	19	8	0	2			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	19	48305634	48305634	A	G	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.925	p.S309P	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	133	1	0.75	182	24	11.59	-	-	-	G	48305634	A	G	48305634	3	3	109	1	0	0	0	0	1	0	0	0	16518	304	11	5	605	5	TPRX1	19	48305634	Missense_Mutation	SNP	A	TCGA-A2-A4RX-01A-11D-A25Q-09		48305634	10823349	19	6802										
FAM65C	0	genome.wustl.edu	37	chr20	49209055	49209055	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.397684953415155	2.25568181818182	4.13541666666667	1.83796296296296	1	1	0	cggaccaccttggcctgtccCgcacagtgaagctcctcgat	10	16	0	1			TCGA-A2-A4RX-01A-11D-A25Q-09	TCGA-A2-A4RX-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	056e8bbf-115e-4226-b2c3-fec4a965f01f	8e67ed48-58b5-403c-8e4c-d0a3fbd299bc	20	49209055	49209055	C	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	silent	c.2403	p.A801	0.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	60	0	0	44	28	38.89	-	-	-	G	49209055	C	G	49209055	2	3	109	1	0	0	0	0	0	0	0	1	5646	639	23	3		3	FAM65C	20	49209055	Silent	SNP	C	TCGA-A2-A4RX-01A-11D-A25Q-09		49209055	13816465	20	6803										
TMEM53	0	genome.wustl.edu	37	chr1	45119965	45119965	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	cacaggaatcagcagcctgaCtgttgcacttgtccaaacac	8	13	1	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	1	45119965	45119965	C	T	SNP	TMEM53	ENST00000468117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM53	HGNC	ENSG00000126106	10	0	0	9	4	30.77	-	-	-	T	45119965	C	T	45119965	1	4	110	0	1	0	0	0	0	0	0	0	16274	580	20	4		4	TMEM53	1	45119965	RNA	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09		45119965	204130656	1	6804										
MYBPHL	0	genome.wustl.edu	37	chr1	109839483	109839483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ctggttttcagcaaagacacGgaaggcataggagttgccga	13	8	1	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	1	109839483	109839483	G	A	SNP	MYBPHL	ENST00000357155	human	ensembl	69_37n	-1	known	missense	c.652	p.R218C	0.994	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPHL	HGNC	ENSG00000221986	124	0	0	95	12	11.21	-	-	-	A	109839483	G	A	109839483	3	1	110	1	0	0	0	0	1	0	0	0	10087	1116	39	1	428	1	MYBPHL	1	109839483	Missense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09	64719518	109839483	139411138	2	6805										
UAP1	0	genome.wustl.edu	37	chr1	162557578	162557578	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	aattcatctttcctgaggatCacttatcaaatggacattta	5	8	4	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	1	162557578	162557578	C	T	SNP	UAP1	ENST00000474728	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UAP1	HGNC	ENSG00000117143	11	0	0	20	5	20	-	-	-	T	162557578	C	T	162557578	1	4	110	0	1	0	0	0	0	0	0	0	16922	841	29	2		2	UAP1	1	162557578	RNA	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09	52718095	162557578	86693043	3	6806										
DTYMK	0	genome.wustl.edu	37	chr2	242615462	242615462	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	aagttgtggggtctggactcTgctggggacggggccttccg	18	9	2	0			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	2	242615462	242615462	T	C	SNP	DTYMK	ENST00000472618	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DTYMK	HGNC	ENSG00000168393	9	0	0	15	12	44.44	-	-	-	C	242615462	T	C	242615462	1	2	110	0	1	0	0	0	0	0	0	0	4833	1595	55	5		5	DTYMK	2	242615462	RNA	SNP	T	TCGA-A2-A4RY-01A-31D-A25Q-09		242615462	583911	4	6807										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	71	0	0	58	10	14.71	-	-	-	A	178936091	G	A	178936091	3	1	110	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		178936091	19086339	5	6808										
TLR1	0	genome.wustl.edu	37	chr4	38798935	38798935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	cagctctggaagaaatcagcCgatgggtgggaaactgaatt	13	7	2	2			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	4	38798935	38798935	C	T	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	silent	c.1518	p.S506	0.002	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	120	0	0	126	14	10	-	-	-	T	38798935	C	T	38798935	2	4	110	1	0	0	0	0	0	0	0	1	16044	639	23	1		1	TLR1	4	38798935	Silent	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09		38798935	152355341	6	6809										
POLK	0	genome.wustl.edu	37	chr5	74894333	74894333	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	gcataagtggttttcttcagGaaaataaatatcacagtatt	7	5	3	0			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	5	74894333	74894333	G	C	SNP	POLK	ENST00000506928	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.859	-	-	-	no_errors	POLK	HGNC	ENSG00000122008	22	0	0	33	7	17.5	-	-	-	C	74894333	G	C	74894333	1	2	110	0	1	0	0	0	0	0	0	0	12278	1189	41	2		2	POLK	5	74894333	RNA	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		74894333	106020927	7	6810										
CDO1	0	genome.wustl.edu	37	chr5	115152249	115152249	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	attagagtgccgaaacgtaaGgatgtcgtcgcagagacagc	13	8	0	2			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	5	115152249	115152249	G	A	SNP	CDO1	ENST00000504613	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	CDO1	HGNC	ENSG00000129596	22	0	0	22	4	15.38	-	-	-	A	115152249	G	A	115152249	1	1	110	0	1	0	0	0	0	0	0	0	3198	1015	35	4		4	CDO1	5	115152249	RNA	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09	40257916	115152249	65763011	8	6811										
SKIV2L	0	genome.wustl.edu	37	chr6	31928496	31928496	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	acacacgggaggaggctgagGaggagatagactttgagaaa	16	5	0	4			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	6	31928496	31928496	G	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	nonsense	c.523	p.E175*	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	29	0	0	35	4	10.26	-	-	-	T	31928496	G	T	31928496	4	4	110	1	0	0	0	0	0	1	0	0	14448	1175	41	2	545	2	SKIV2L	6	31928496	Nonsense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		31928496	139186571	9	6812										
GPR63	0	genome.wustl.edu	37	chr6	97247453	97247453	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	aggaactcaaaccagtgggaGccatggtttcaaaactatat	9	8	2	0			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	6	97247453	97247453	G	C	SNP	GPR63	ENST00000229955	human	ensembl	69_37n	-1	known	missense	c.155	p.A52G	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218	75	0	0	57	12	17.39	-	-	-	C	97247453	G	C	97247453	3	2	110	1	0	0	0	0	1	0	0	0	6754	971	34	4	1108	4	GPR63	6	97247453	Missense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09	65318957	97247453	73867614	10	6813										
ACTB	0	genome.wustl.edu	37	chr7	5567112	5567112	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	caagggacttcctgtaacaaCgcatctcatatttggaatga	8	9	1	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	7	5567112	5567112	C	T	SNP	ACTB	ENST00000464611	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ACTB	HGNC	ENSG00000075624	43	0	0	33	4	10.81	-	-	-	T	5567112	C	T	5567112	1	4	110	0	1	0	0	0	0	0	0	0	193	551	19	1		1	ACTB	7	5567112	RNA	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09		5567112	153571551	11	6814										
CASP2	0	genome.wustl.edu	37	chr7	142997325	142997325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ggtttttcagctctttgacaAcgccaactgcccaagcctac	7	14	2	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	7	142997325	142997325	A	G	SNP	CASP2	ENST00000310447	human	ensembl	69_37n	1	known	missense	c.905	p.N302S	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144	49	0	0	45	5	10	-	-	-	G	142997325	A	G	142997325	3	3	110	1	0	0	0	0	1	0	0	0	2696	43	2	5	935	5	CASP2	7	142997325	Missense_Mutation	SNP	A	TCGA-A2-A4RY-01A-31D-A25Q-09	137430213	142997325	16141338	12	6815										
ESRP1	0	genome.wustl.edu	37	chr8	95718733	95718733	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ttttaaaacacctgaagataAattagaagaaattgtgcacc	6	6	0	4			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	8	95718733	95718733	A	T	SNP	ESRP1	ENST00000523347	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ESRP1	HGNC	ENSG00000104413	17	0	0	17	5	22.73	-	-	-	T	95718733	A	T	95718733	1	4	110	0	1	0	0	0	0	0	0	0	5295	29	1	5		5	ESRP1	8	95718733	RNA	SNP	A	TCGA-A2-A4RY-01A-31D-A25Q-09		95718733	50645289	13	6816										
FER1L6	0	genome.wustl.edu	37	chr8	125047692	125047692	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ccccatctaacctgctctacCaaggtagggtccccactggg	9	16	2	0			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	8	125047692	125047692	C	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.2461	p.Q821K	0.996	superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	83	0	0	67	10	12.99	-	-	-	A	125047692	C	A	125047692	3	1	110	1	0	0	0	0	1	0	0	0	5861	595	21	4	2531	4	FER1L6	8	125047692	Missense_Mutation	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09	29328959	125047692	21316330	14	6817										
TPM2	0	genome.wustl.edu	37	chr9	35689839	35689839	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	gcggtggggggtgggccggcCggcaggcggtgaggaccgga	25	9	0	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	9	35689839	35689839	C	T	SNP	TPM2	ENST00000471212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPM2	HGNC	ENSG00000198467	129	0	0	87	11	11.22	-	-	-	T	35689839	C	T	35689839	1	4	110	0	1	0	0	0	0	0	0	0	16502	667	23	1		1	TPM2	9	35689839	RNA	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09		35689839	105523592	15	6818										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	tattgaaaaagaaagcaagtTcacatgccgttgataggctg	10	6	1	3			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	26	0	0	23	8	25.81	-	-	-	A	69390020	T	A	69390020	3	1	110	1	0	0	0	0	1	0	0	0	650	1783	62	5	588	5	ANKRD20A4	9	69390020	Missense_Mutation	SNP	T	TCGA-A2-A4RY-01A-31D-A25Q-09	33700181	69390020	71823411	16	6819										
TRDMT1	0	genome.wustl.edu	37	chr10	17194026	17194026	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	aaaacaaaaaagcactgaagAaaagctgaggaattcatttt	7	5	1	3			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	10	17194026	17194026	A	G	SNP	TRDMT1	ENST00000452380	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRDMT1	HGNC	ENSG00000107614	57	0	0	46	8	14.81	-	-	-	G	17194026	A	G	17194026	1	3	110	0	1	0	0	0	0	0	0	0	16563	261	9	5		5	TRDMT1	10	17194026	RNA	SNP	A	TCGA-A2-A4RY-01A-31D-A25Q-09		17194026	118340721	17	6820										
CYP2C18	0	genome.wustl.edu	37	chr10	96495284	96495284	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ttggcctctcccttctctctGtgagggatattttctctgac	8	12	4	2			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	10	96495284	96495284	G	A	SNP	CYP2C18	ENST00000476630	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP2C18	HGNC	ENSG00000108242	44	0	0	52	6	10.34	-	-	-	A	96495284	G	A	96495284	1	1	110	0	1	0	0	0	0	0	0	0	4196	1392	48	4		4	CYP2C18	10	96495284	RNA	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09	79301258	96495284	39039463	18	6821										
ZNF518A	0	genome.wustl.edu	37	chr10	97922999	97922999	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	tttgttaacttaagttattcTgagggaggcagacctgctta	10	6	1	2			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	10	97922999	97922999	T	A	SNP	ZNF518A	ENST00000534948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	51	0	0	50	7	12.28	-	-	-	A	97922999	T	A	97922999	1	1	110	0	1	0	0	0	0	0	0	0	18058	1595	55	5		5	ZNF518A	10	97922999	RNA	SNP	T	TCGA-A2-A4RY-01A-31D-A25Q-09	1427715	97922999	37611748	19	6822										
ANKRD49	0	genome.wustl.edu	37	chr11	94231847	94231847	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	caagtgaattgcctgactttGatgtcaaaatgtatttgaaa	8	5	1	4			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	11	94231847	94231847	G	A	SNP	ANKRD49	ENST00000538535	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.932	-	-	-	no_errors	ANKRD49	HGNC	ENSG00000168876	19	0	0	15	5	25	-	-	-	A	94231847	G	A	94231847	1	1	110	0	1	0	0	0	0	0	0	0	674	1305	45	2		2	ANKRD49	11	94231847	RNA	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		94231847	40774669	20	6823										
C1S	0	genome.wustl.edu	37	chr12	7169068	7169068	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ctttgaaggtgacactgagcCccaggtgacgccgcaccacc	11	15	0	4			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	12	7169068	7169068	C	T	SNP	C1S	ENST00000541647	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1S	HGNC	ENSG00000182326	36	0	0	34	7	17.07	-	-	-	T	7169068	C	T	7169068	1	4	110	0	1	0	0	0	0	0	0	0	1993	638	22	4		4	C1S	12	7169068	RNA	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09		7169068	126682827	21	6824										
ULK1	0	genome.wustl.edu	37	chr12	132399950	132399950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ggagctgagatgcggggtggCaggtcccctcgtccaggtgg	19	10	0	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	12	132399950	132399950	C	T	SNP	ULK1	ENST00000538444	human	ensembl	69_37n	1	putative	missense	c.137	p.A46V	0.999	NULL	NULL	-	no_errors	ULK1	HGNC	ENSG00000177169	57	0	0	36	7	16.28	-	-	-	T	132399950	C	T	132399950	3	4	110	1	0	0	0	0	1	0	0	0	17072	697	25	4	1663	4	ULK1	12	132399950	Missense_Mutation	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09	125230882	132399950	1451945	22	6825										
CBX8	0	genome.wustl.edu	37	chr17	77772068	77772068	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	ccaccgctcttcccaacgtgGgcggcggacatcctgcgaga	12	16	1	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	17	77772068	77772068	G	A	SNP	CBX8	ENST00000413392	human	ensembl	69_37n	-1	putative	silent	c.12	p.A4	0.003	smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_stop_codon	CBX8	HGNC	ENSG00000141570	19	0	0	10	3	23.08	-	-	-	A	77772068	G	A	77772068	2	1	110	1	0	0	0	0	0	0	0	1	2749	1247	43	4		4	CBX8	17	77772068	Silent	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		77772068	3423142	23	6826										
KIR2DL3	0	genome.wustl.edu	37	chr19	55275387	55275387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	cacccactgaaccaagctccAaaaccggtgagtacagaacc	7	15	0	3			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	19	55275387	55275387	A	G	SNP	KIR2DL3	ENST00000434419	human	ensembl	69_37n	1	known	missense	c.709	p.K237E	0.051	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772	80	0	0	84	11	11.58	-	-	-	G	55275387	A	G	55275387	3	3	110	1	0	0	0	0	1	0	0	0	8370	145	5	5		5	KIR2DL3	19	55275387	Missense_Mutation	SNP	A	TCGA-A2-A4RY-01A-31D-A25Q-09		55275387	3853596	24	6827										
ZNF417	0	genome.wustl.edu	37	chr19	58420699	58420699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	gcctttctccagtgtgaacaCgctgatggctaataaggctg	11	10	1	2			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	19	58420699	58420699	C	A	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.947	p.R316L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	194	0	0	175	20	10.2	-	-	-	A	58420699	C	A	58420699	3	1	110	1	0	0	0	0	1	0	0	0	17990	536	19	3	784	3	ZNF417	19	58420699	Missense_Mutation	SNP	C	TCGA-A2-A4RY-01A-31D-A25Q-09	3145312	58420699	708284	25	6828										
PLA2G6	0	genome.wustl.edu	37	chr22	38512402	38512402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	tccggcagtgctggaggagtGtcagattggtccaaccttgg	15	9	1	1			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	22	38512402	38512402	G	A	SNP	PLA2G6	ENST00000454670	human	ensembl	69_37n	-1	known	missense	c.403	p.H135Y	0.050	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLA2G6	HGNC	ENSG00000184381	44	0	0	35	4	10.26	-	-	-	A	38512402	G	A	38512402	3	1	110	1	0	0	0	0	1	0	0	0	12082	1392	48	4		4	PLA2G6	22	38512402	Missense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		38512402	12792164	26	6829										
NLGN3	0	genome.wustl.edu	37	chrX	70375090	70375090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.842573691990793	1.13771626297578	0	1.28941176470588	0.1	0.5224358974359	0	gggacagtggtgctaaacccGtcatggtctacatccacgga	12	11	2	0			TCGA-A2-A4RY-01A-31D-A25Q-09	TCGA-A2-A4RY-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4c400e78-37d6-45e8-a080-08edaa1fd748	89b85d2b-73e8-4256-96f0-0cd90ad601de	X	70375090	70375090	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.604	p.V202I	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	83	0	0	52	6	10.34	-	-	-	A	70375090	G	A	70375090	3	1	110	1	0	0	0	0	1	0	0	0	10535	1145	40	1	618	1	NLGN3	23	70375090	Missense_Mutation	SNP	G	TCGA-A2-A4RY-01A-31D-A25Q-09		70375090	84895470	27	6830										
SAMD11	0	genome.wustl.edu	37	chr1	879085	879085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcccccttccaggtcttcaGggagcaggggatcgacgggg	15	13	2	0			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	1	879085	879085	G	T	SNP	SAMD11	ENST00000342066	human	ensembl	69_37n	1	known	missense	c.1697	p.R566M	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD11	HGNC	ENSG00000187634	34	0	0	23	4	14.81	-	-	-	T	879085	G	T	879085	3	4	111	1	0	0	0	0	1	0	0	0	13902	1000	35	4	1743	4	SAMD11	1	879085	Missense_Mutation	SNP	G	TCGA-A2-A4S0-01A-21D-A25Q-09		879085	248371536	1	6831										
PCNXL2	0	genome.wustl.edu	37	chr1	233119951	233119951	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	aggaggagtccctcatggatCgcggtattggttggttgtgg	17	6	1	0			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	1	233119951	233119951	C	T	SNP	PCNXL2	ENST00000462762	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCNXL2	HGNC	ENSG00000135749	27	0	0	31	5	13.51	-	-	-	T	233119951	C	T	233119951	1	4	111	0	1	0	0	0	0	0	0	0	11665	899	31	1		1	PCNXL2	1	233119951	RNA	SNP	C	TCGA-A2-A4S0-01A-21D-A25Q-09	232240866	233119951	16130670	2	6832										
SLC12A7	0	genome.wustl.edu	37	chr5	1075565	1075565	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtaccaggagcagatgaacaTcagcgccaggcacaggctca	12	12	2	2			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	5	1075565	1075565	T	C	SNP	SLC12A7	ENST00000264930	human	ensembl	69_37n	-1	known	missense	c.1888	p.M630V	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504	44	0	0	14	9	39.13	-	-	-	C	1075565	T	C	1075565	3	2	111	1	0	0	0	0	1	0	0	0	14477	1435	50	5	1403	5	SLC12A7	5	1075565	Missense_Mutation	SNP	T	TCGA-A2-A4S0-01A-21D-A25Q-09		1075565	179839695	3	6833										
FBXL21	0	genome.wustl.edu	37	chr5	135276438	135276438	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccttttgaaaattatataccTatgaagcataaattatttaa	3	5	0	2			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	5	135276438	135276438	T	C	SNP	FBXL21	ENST00000467490	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FBXL21	HGNC	ENSG00000164616	30	0	0	20	3	13.04	-	-	-	C	135276438	T	C	135276438	1	2	111	0	1	0	0	0	0	0	0	0	5764	1537	53	5		5	FBXL21	5	135276438	RNA	SNP	T	TCGA-A2-A4S0-01A-21D-A25Q-09	134200873	135276438	45638822	4	6834										
FAM83B	0	genome.wustl.edu	37	chr6	54805818	54805818	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctggaaatagtaagcattaTgtatatagtacacttaccag	7	7	0	0			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	6	54805818	54805818	T	C	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	silent	c.2049	p.Y683	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	53	0	0	30	19	38.78	-	-	-	C	54805818	T	C	54805818	2	2	111	1	0	0	0	0	0	0	0	1	5679	1471	51	5		5	FAM83B	6	54805818	Silent	SNP	T	TCGA-A2-A4S0-01A-21D-A25Q-09		54805818	116309249	5	6835										
NOD1	0	genome.wustl.edu	37	chr7	30492497	30492498	+	Frame_Shift_Del	DEL	CT	CT	-													0	0	1	0	NA	0	1	1	0	ggtccaggaggcaggccaggCtgttcaggctgcccaggctc							TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	7	30492497	30492498	CT	-	DEL	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	frame_shift_del	c.536_535	p.S179fs	0.732:0.095	NULL	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	50	0	0	26	23	46.94	-	-	-	-	30492498	CT	-	30492497	7	5	111	1	0	1	0	1	0	0	0	0	10588	797	28	0	2361	0	NOD1	7	30492497	Frame_Shift_Del	DEL	CT	TCGA-A2-A4S0-01A-21D-A25Q-09		30492497	128646166	6	6836										
LIMK1	0	genome.wustl.edu	37	chr7	73535625	73535625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctgcccaccctgaggtcccCgactgagccagggccactca	10	19	1	2			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	7	73535625	73535625	C	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	silent	c.1938	p.P646	0.275	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	24	0	0	12	8	40	-	-	-	T	73535625	C	T	73535625	2	4	111	1	0	0	0	0	0	0	0	1	8856	639	23	1		1	LIMK1	7	73535625	Silent	SNP	C	TCGA-A2-A4S0-01A-21D-A25Q-09	43043128	73535625	85603038	7	6837										
USP5	0	genome.wustl.edu	37	chr12	6964624	6964624	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgggctttgggaaacagtaTgtggagagacatttcaataa	12	5	1	1			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	12	6964624	6964624	T	C	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	silent	c.171	p.Y57	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	59	0	0	37	15	28.85	-	-	-	C	6964624	T	C	6964624	2	2	111	1	0	0	0	0	0	0	0	1	17178	1471	51	5		5	USP5	12	6964624	Silent	SNP	T	TCGA-A2-A4S0-01A-21D-A25Q-09		6964624	126887271	8	6838										
USP44	0	genome.wustl.edu	37	chr12	95926683	95926683	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agtttcctttgagaagtgggGataagagctggtaaactggt	14	4	0	2			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	12	95926683	95926683	G	T	SNP	USP44	ENST00000258499	human	ensembl	69_37n	-1	known	silent	c.1350	p.I450	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP44	HGNC	ENSG00000136014	38	0	0	22	3	12	-	-	-	T	95926683	G	T	95926683	2	4	111	1	0	0	0	0	0	0	0	1	17172	1164	41	2		2	USP44	12	95926683	Silent	SNP	G	TCGA-A2-A4S0-01A-21D-A25Q-09	88962059	95926683	37925212	9	6839										
SMG1	0	genome.wustl.edu	37	chr16	18877754	18877754	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gccactaattcttcagtaagAaaggcactcaagtattgctg	8	9	3	1			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	16	18877754	18877754	A	G	SNP	SMG1	ENST00000566328	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	SMG1	HGNC	ENSG00000157106	55	0	0	35	4	10.26	-	-	-	G	18877754	A	G	18877754	1	3	111	0	1	0	0	0	0	0	0	0	14884	261	9	5		5	SMG1	16	18877754	RNA	SNP	A	TCGA-A2-A4S0-01A-21D-A25Q-09		18877754	71476999	10	6840										
BRCA1	0	genome.wustl.edu	37	chr17	41258536	41258536	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctttcttctggttgagaagtTtcagcatgcaaaatctataa	7	7	4	1			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	17	41258536	41258536	T	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.149	p.K50T	1.000	pirsf_BRCA1,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	47	0	0	35	14	28.57	-	-	-	G	41258536	T	G	41258536	3	3	111	1	0	0	0	0	1	0	0	0	1506	1841	64	5	5592	5	BRCA1	17	41258536	Missense_Mutation	SNP	T	TCGA-A2-A4S0-01A-21D-A25Q-09		41258536	39936674	11	6841										
B4GALNT2	0	genome.wustl.edu	37	chr17	47247044	47247044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctcacccgggtccagttcaAgctggccctccactacttca	7	18	3	0			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	17	47247044	47247044	A	G	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	missense	c.1655	p.K552R	1.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	79	0	0	39	31	44.29	-	-	-	G	47247044	A	G	47247044	3	3	111	1	0	0	0	0	1	0	0	0	1271	72	3	5	1715	5	B4GALNT2	17	47247044	Missense_Mutation	SNP	A	TCGA-A2-A4S0-01A-21D-A25Q-09	5988508	47247044	33948166	12	6842										
VCX3B	0	genome.wustl.edu	37	chrX	8434192	8434193	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	ctgagtcaggagagcgaggtINSggaagaaccactgagtcagg							TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	X	8434192	8434193	-	C	INS	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	frame_shift_ins	c.419_420	p.E141fs	0.000:0.001	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	36	0	0	9	2	18.18	-	-	-	C	8434193	-	C	8434192	7	5	111	1	0	1	1	0	0	0	0	0	17242	1696	59	0	429	0	VCX3B	23	8434192	Frame_Shift_Ins	INS	-	TCGA-A2-A4S0-01A-21D-A25Q-09		8434192	146836368	13	6843										
RIMS3	0	genome.wustl.edu	37	chr1	41107465	41107465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ggcacccaggctgctccgccGcttcttggcggtggtggtcc	15	15	1	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	1	41107465	41107465	G	A	SNP	RIMS3	ENST00000372683	human	ensembl	69_37n	-1	known	missense	c.133	p.R45W	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RIMS3	HGNC	ENSG00000117016	65	0	0	37	35	48.61	-	-	-	A	41107465	G	A	41107465	3	1	112	1	0	0	0	0	1	0	0	0	13455	1086	38	1	817	1	RIMS3	1	41107465	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		41107465	208143156	1	6844										
MAGOH	0	genome.wustl.edu	37	chr1	53699120	53699120	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ttgtccatagtagttagtaaGtgagataggcaacaaaagct	10	5	0	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	1	53699120	53699120	G	T	SNP	MAGOH	ENST00000462941	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	MAGOH	HGNC	ENSG00000162385	42	0	0	33	4	10.81	-	-	-	T	53699120	G	T	53699120	1	4	112	0	1	0	0	0	0	0	0	0	9265	1044	36	4		4	MAGOH	1	53699120	RNA	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	12591655	53699120	195551501	2	6845										
GREB1	0	genome.wustl.edu	37	chr2	11725303	11725303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ctaggtatcttgtcaaactcCgggccccccaaaaaacgcca	7	15	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	2	11725303	11725303	C	A	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.918	p.S306	0.492	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	48	0	0	35	13	27.08	-	-	-	A	11725303	C	A	11725303	2	1	112	1	0	0	0	0	0	0	0	1	6811	639	23	3		3	GREB1	2	11725303	Silent	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		11725303	231474070	3	6846										
GFPT1	0	genome.wustl.edu	37	chr2	69554198	69554198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ctccttatcacaaattaccaCaggccgcccctaggaaagaa	6	14	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	2	69554198	69554198	C	A	SNP	GFPT1	ENST00000357308	human	ensembl	69_37n	-1	known	missense	c.1903	p.V635L	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380	74	0	0	41	12	22.64	-	-	-	A	69554198	C	A	69554198	3	1	112	1	0	0	0	0	1	0	0	0	6397	478	17	4	204	4	GFPT1	2	69554198	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	57828895	69554198	173645175	4	6847										
EXOC6B	0	genome.wustl.edu	37	chr2	72692351	72692351	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aatgaggtctaccaggtaatCactagctttgttgcccaaat	8	9	2	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	2	72692351	72692351	C	T	SNP	EXOC6B	ENST00000272427	human	ensembl	69_37n	-1	known	missense	c.1918	p.D640N	1.000	pfam_Sec15,pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036	75	0	0	72	18	20	-	-	-	T	72692351	C	T	72692351	3	4	112	1	0	0	0	0	1	0	0	0	5345	826	29	2	537	2	EXOC6B	2	72692351	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	3138153	72692351	170507022	5	6848										
LRP1B	0	genome.wustl.edu	37	chr2	141773300	141773300	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	attcaaaaatactttttcaaTatgatcgtaataggcatcac	4	7	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	2	141773300	141773300	T	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.2155	p.I719F	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	54	0	0	17	7	29.17	-	-	-	A	141773300	T	A	141773300	3	1	112	1	0	0	0	0	1	0	0	0	9021	1406	49	5	11960	5	LRP1B	2	141773300	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	69080949	141773300	101426073	6	6849										
ITGB6	0	genome.wustl.edu	37	chr2	160983046	160983046	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aggagtccgtgctggtggtgCagttgcagtactcgccagtc	15	10	0	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	2	160983046	160983046	C	A	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	missense	c.1727	p.C576F	1.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	31	0	0	26	8	23.53	-	-	-	A	160983046	C	A	160983046	3	1	112	1	0	0	0	0	1	0	0	0	7953	710	25	4	659	4	ITGB6	2	160983046	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	19209746	160983046	82216327	7	6850										
SETD5	0	genome.wustl.edu	37	chr3	9482144	9482144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aatttgttttctacagaattCtccctctgaagcacagaatt	5	9	3	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	9482144	9482144	C	G	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.572	p.S191C	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	55	0	0	35	22	38.6	-	-	-	G	9482144	C	G	9482144	3	3	112	1	0	0	0	0	1	0	0	0	14222	913	32	2	594	2	SETD5	3	9482144	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		9482144	188540286	8	6851										
RBMS3	0	genome.wustl.edu	37	chr3	29938890	29938890	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	attttattcttcaccgtacaGtattgcaaccaaccgcatga	5	11	2	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	29938890	29938890	G	C	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.812	p.S271T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	43	0	0	20	8	28.57	-	-	-	C	29938890	G	C	29938890	3	2	112	1	0	0	0	0	1	0	0	0	13233	1029	36	4	889	4	RBMS3	3	29938890	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	20456746	29938890	168083540	9	6852										
FEZF2	0	genome.wustl.edu	37	chr3	62355985	62355985	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acatttgtactgcttctcgcCgctgtgggtcagcttgtggt	12	10	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	62355985	62355985	C	G	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	missense	c.1153	p.G385R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	170	0	0	85	19	18.27	-	-	-	G	62355985	C	G	62355985	3	3	112	1	0	0	0	0	1	0	0	0	5872	652	23	3	230	3	FEZF2	3	62355985	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	32417095	62355985	135666445	10	6853										
GUCA1C	0	genome.wustl.edu	37	chr3	108626879	108626879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	attctcacagctacttcattTtcaccttccctagaccagcc	3	16	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	108626879	108626879	T	C	SNP	GUCA1C	ENST00000261047	human	ensembl	69_37n	-1	known	missense	c.620	p.K207R	0.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472	75	0	0	40	24	37.5	-	-	-	C	108626879	T	C	108626879	3	2	112	1	0	0	0	0	1	0	0	0	6941	1841	64	5	13	5	GUCA1C	3	108626879	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	46270894	108626879	89395551	11	6854										
XRN1	0	genome.wustl.edu	37	chr3	142131500	142131500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ggtgagtcttcattggtcatCaaatgctgtgaaaatatgaa	10	5	4	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	142131500	142131500	C	T	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	silent	c.1599	p.L533	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	82	0	0	64	14	17.95	-	-	-	T	142131500	C	T	142131500	2	4	112	1	0	0	0	0	0	0	0	1	17556	825	29	2		2	XRN1	3	142131500	Silent	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	33504621	142131500	55890930	12	6855										
DLG1	0	genome.wustl.edu	37	chr3	197009567	197009567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cacctctacactagggctaaGgctgcttggcagtgtctctg	11	12	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	3	197009567	197009567	G	T	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.301	p.L101I	1.000	pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	50	0	0	42	5	10.64	-	-	-	T	197009567	G	T	197009567	3	4	112	1	0	0	0	0	1	0	0	0	4590	1000	35	4	2609	4	DLG1	3	197009567	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	54878067	197009567	1012863	13	6856										
SLIT2	0	genome.wustl.edu	37	chr4	20530616	20530616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	taagtggagactgctttgcgGatctggcttgccctgaaaag	13	8	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	4	20530616	20530616	G	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.1507	p.D503Y	1.000	NULL	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	50	0	0	29	14	32.56	-	-	-	T	20530616	G	T	20530616	3	4	112	1	0	0	0	0	1	0	0	0	14829	1174	41	2	1569	2	SLIT2	4	20530616	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		20530616	170623660	14	6857										
KDR	0	genome.wustl.edu	37	chr4	55976929	55976929	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cacttccaaaagcaacaaaaGgtttttctggaagaaaataa	6	7	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	4	55976929	55976929	G	T	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.983	p.P328H	1.000	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	38	0	0	35	15	30	-	-	-	T	55976929	G	T	55976929	3	4	112	1	0	0	0	0	1	0	0	0	8192	1000	35	4	3179	4	KDR	4	55976929	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	35446313	55976929	135177347	15	6858										
KDR	0	genome.wustl.edu	37	chr4	55981116	55981116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ttcacagaagaccatgccagCatagctgatcatgtagctgg	10	10	2	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	4	55981116	55981116	C	A	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.583	p.A195S	1.000	smart_Ig_sub,prints_Tyr_kinase_VEGFR2_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	59	0	0	41	10	19.61	-	-	-	A	55981116	C	A	55981116	3	1	112	1	0	0	0	0	1	0	0	0	8192	710	25	4	3591	4	KDR	4	55981116	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	4187	55981116	135173160	16	6859										
TSPAN5	0	genome.wustl.edu	37	chr4	99399882	99399882	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	atggaacgccacatcgctctCgacttgcattggaatctgtg	10	11	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	4	99399882	99399882	C	A	SNP	TSPAN5	ENST00000508798	human	ensembl	69_37n	-1	known	nonsense	c.466	p.E156*	1.000	NULL	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785	50	0	0	29	14	32.56	-	-	-	A	99399882	C	A	99399882	4	1	112	1	0	0	0	0	0	1	0	0	16746	884	31	3	292	3	TSPAN5	4	99399882	Nonsense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	43418766	99399882	91754394	17	6860										
SLC25A4	0	genome.wustl.edu	37	chr4	186066173	186066173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acctggcgtccggtggggccGctggggccacctccctttgc	15	16	0	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	4	186066173	186066173	G	A	SNP	SLC25A4	ENST00000281456	human	ensembl	69_37n	1	known	missense	c.367	p.A123T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Aden_trnslctor	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729	61	0	0	37	9	19.57	-	-	-	A	186066173	G	A	186066173	3	1	112	1	0	0	0	0	1	0	0	0	14593	1087	38	1	373	1	SLC25A4	4	186066173	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	86666291	186066173	5088103	18	6861										
DTWD2	0	genome.wustl.edu	37	chr5	118176659	118176659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ttccattttcctgagtttgcGtttgttctttggcattggtt	9	7	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	5	118176659	118176659	G	A	SNP	DTWD2	ENST00000510708	human	ensembl	69_37n	-1	known	missense	c.850	p.R284C	1.000	NULL	pfam_DTW	-	no_errors	DTWD2	HGNC	ENSG00000169570	112	0	0	112	14	11.11	-	-	-	A	118176659	G	A	118176659	3	1	112	1	0	0	0	0	1	0	0	0	4827	1145	40	1	50	1	DTWD2	5	118176659	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		118176659	62738601	19	6862										
COL11A2	0	genome.wustl.edu	37	chr6	33130533	33130533	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aagctgggcacagggtcctgGgagtcccttccatatgccac	12	13	0	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	6	33130533	33130533	G	A	SNP	COL11A2	ENST00000477772	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	COL11A2	HGNC	ENSG00000204248	63	0	0	34	16	32	-	-	-	A	33130533	G	A	33130533	1	1	112	0	1	0	0	0	0	0	0	0	3698	1247	43	4		4	COL11A2	6	33130533	RNA	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		33130533	137984534	20	6863										
IL6	0	genome.wustl.edu	37	chr7	22767176	22767176	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	atgtagccgccccacacagaCagccactcacctcttcagaa	6	17	3	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	7	22767176	22767176	C	A	SNP	IL6	ENST00000420258	human	ensembl	69_37n	1	known	missense	c.295	p.Q99K	0.000	NULL	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,prints_Interleukin_6,prints_IL6_MGF_GCSF	-	no_errors	IL6	HGNC	ENSG00000136244	90	0	0	51	20	27.78	-	-	-	A	22767176	C	A	22767176	3	1	112	1	0	0	0	0	1	0	0	0	7755	479	17	4	139	4	IL6	7	22767176	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		22767176	136371487	21	6864										
ZNF107	0	genome.wustl.edu	37	chr7	64167462	64167462	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aacctattctcaaatcttacTaaccataagagaattcatgc	3	10	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	7	64167462	64167462	T	C	SNP	ZNF107	ENST00000344930	human	ensembl	69_37n	1	known	silent	c.780	p.T260	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247	33	0	0	28	11	28.21	-	-	-	C	64167462	T	C	64167462	2	2	112	1	0	0	0	0	0	0	0	1	17811	1509	53	5		5	ZNF107	7	64167462	Silent	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	41400286	64167462	94971201	22	6865										
HOOK3	0	genome.wustl.edu	37	chr8	42823321	42823321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gaagagttaagaaaggccaaCgcagcgcgaagtcaacttga	12	8	1	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	8	42823321	42823321	C	G	SNP	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	missense	c.1086	p.N362K	1.000	pfam_HOOK	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	24	0	0	13	9	40.91	-	-	-	G	42823321	C	G	42823321	3	3	112	1	0	0	0	0	1	0	0	0	7335	535	19	3	1128	3	HOOK3	8	42823321	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		42823321	103540701	23	6866										
FER1L6	0	genome.wustl.edu	37	chr8	125072506	125072506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ggttcctgccaacattcggcCggtgctgagcaaataccgag	12	12	0	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	8	125072506	125072506	C	T	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.2960	p.P987L	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	110	0	0	84	18	17.65	-	-	-	T	125072506	C	T	125072506	3	4	112	1	0	0	0	0	1	0	0	0	5861	652	23	1	3046	1	FER1L6	8	125072506	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	82249185	125072506	21291516	24	6867										
C9orf85	0	genome.wustl.edu	37	chr9	74562026	74562026	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ccattatcaaaacctaaaaaGtggtgagttaagattcttca	6	7	3	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	9	74562026	74562026	G	C	SNP	C9orf85	ENST00000377031	human	ensembl	69_37n	1	known	missense	c.207	p.K69N	1.000	pfam_DUF2039	pfam_DUF2039	-	no_errors	C9orf85	HGNC	ENSG00000155621	75	0	0	49	20	28.99	-	-	-	C	74562026	G	C	74562026	3	2	112	1	0	0	0	0	1	0	0	0	2526	1020	36	4	213	4	C9orf85	9	74562026	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		74562026	66651405	25	6868										
LAMC3	0	genome.wustl.edu	37	chr9	133967273	133967273	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	tgcccatacagacattccccGgagccggctgctgtgaactc	10	15	0	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	9	133967273	133967273	G	C	SNP	LAMC3	ENST00000462567	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LAMC3	HGNC	ENSG00000050555	21	0	0	5	4	44.44	-	-	-	C	133967273	G	C	133967273	1	2	112	0	1	0	0	0	0	0	0	0	8670	1131	39	3		3	LAMC3	9	133967273	RNA	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	59405247	133967273	7246158	26	6869										
GPRIN2	0	genome.wustl.edu	37	chr10	46999522	46999522	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	agcagcagtgcccaggctgaGcccaaagctgctgaacagct	12	13	0	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	10	46999522	46999522	G	A	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	silent	c.642	p.E214	0.003	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	96	0	0	62	12	16	-	-	-	A	46999522	G	A	46999522	2	1	112	1	0	0	0	0	0	0	0	1	6781	962	34	4		4	GPRIN2	10	46999522	Silent	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		46999522	88535225	27	6870										
CDH23	0	genome.wustl.edu	37	chr10	73377107	73377107	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cactgagctggcacaggtcgGctttgcccttccactcttca	9	15	2	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	10	73377107	73377107	G	C	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.1106	p.G369A	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	74	0	0	50	8	13.79	-	-	-	C	73377107	G	C	73377107	3	2	112	1	0	0	0	0	1	0	0	0	3137	1203	42	4	1129	4	CDH23	10	73377107	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	26377585	73377107	62157640	28	6871										
CYP2C19	0	genome.wustl.edu	37	chr10	96522609	96522609	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ctacagatagatattaaggaTgtcagcaaatccttaaccaa	6	8	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	10	96522609	96522609	T	A	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.147	p.D49E	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	76	0	0	44	13	22.81	-	-	-	A	96522609	T	A	96522609	3	1	112	1	0	0	0	0	1	0	0	0	4197	1461	51	5	149	5	CYP2C19	10	96522609	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	23145502	96522609	39012138	29	6872										
TRIM21	0	genome.wustl.edu	37	chr11	4406636	4406636	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gcagaggtcctgtaaaggcaCattcagagaaggagtagatg	14	6	1	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	11	4406636	4406636	C	G	SNP	TRIM21	ENST00000254436	human	ensembl	69_37n	-1	known	missense	c.1307	p.C436S	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109	58	0	0	36	13	26.53	-	-	-	G	4406636	C	G	4406636	3	3	112	1	0	0	0	0	1	0	0	0	16591	478	17	4	124	4	TRIM21	11	4406636	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		4406636	130599880	30	6873										
ADM	0	genome.wustl.edu	37	chr11	10327891	10327891	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gcccgcagcagtccggatgcCgcccgcatccgagtcaagcg	13	17	1	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	11	10327891	10327891	C	G	SNP	ADM	ENST00000526492	human	ensembl	69_37n	1	putative	missense	c.292	p.R98G	0.001	NULL	pfam_Procalcitonin/adrenomedullin,prints_Adrenomedullin	-	no_errors	ADM	HGNC	ENSG00000148926	82	0	0	51	7	12.07	-	-	-	G	10327891	C	G	10327891	3	3	112	1	0	0	0	0	1	0	0	0	321	639	23	3	271	3	ADM	11	10327891	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	5921255	10327891	124678625	31	6874										
LGR4	0	genome.wustl.edu	37	chr11	27390453	27390453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cccaccaaatgccaaattcaGcgaatctgccccaggacaca	6	16	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	11	27390453	27390453	G	A	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	missense	c.1817	p.A606V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	50	0	0	50	9	15.25	-	-	-	A	27390453	G	A	27390453	3	1	112	1	0	0	0	0	1	0	0	0	8811	971	34	4	1042	4	LGR4	11	27390453	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	17062562	27390453	107616063	32	6875										
TRAF6	0	genome.wustl.edu	37	chr11	36511783	36511783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cggtaactgaaggtgcaagcGcatgcacagtttgtacccgg	13	10	0	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	11	36511783	36511783	G	A	SNP	TRAF6	ENST00000348124	human	ensembl	69_37n	-1	known	missense	c.1174	p.R392C	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104	106	0	0	60	12	16.44	-	-	-	A	36511783	G	A	36511783	3	1	112	1	0	0	0	0	1	0	0	0	16541	1087	38	1	398	1	TRAF6	11	36511783	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	9121330	36511783	98494733	33	6876										
MRE11A	0	genome.wustl.edu	37	chr11	94219175	94219175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acaatattttcttaataactCgaggcaggtatgtaatgttt	7	5	1	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	11	94219175	94219175	C	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.229	p.E77K	0.994	pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	29	0	0	21	4	16	-	-	-	T	94219175	C	T	94219175	3	4	112	1	0	0	0	0	1	0	0	0	9831	893	31	1	1965	1	MRE11A	11	94219175	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	57707392	94219175	40787341	34	6877										
TMEM19	0	genome.wustl.edu	37	chr12	72091146	72091146	+	Frame_Shift_Del	DEL	G	G	-													0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acatgatagaaaatggccccGgggaaatcccagtcgatttt							TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	12	72091146	72091146	G	-	DEL	TMEM19	ENST00000266673	human	ensembl	69_37n	1	known	frame_shift_del	c.469	p.E158fs	1.000	pfam_DUF92_TMEM19	pfam_DUF92_TMEM19	-	no_errors	TMEM19	HGNC	ENSG00000139291	80	0	0	41	13	24.07	-	-	-	-	72091146	G	-	72091146	7	5	112	1	0	1	0	1	0	0	0	0	16208	1116	39	0	483	0	TMEM19	12	72091146	Frame_Shift_Del	DEL	G	TCGA-A2-A4S1-01A-21D-A25Q-09		72091146	61760749	35	6878										
LHX5	0	genome.wustl.edu	37	chr12	113909155	113909155	+	Frame_Shift_Del	DEL	A	A	-													0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aaaagtcatttttgcagtagAgcttgccctcgcgcgagaag							TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	12	113909155	113909155	A	-	DEL	LHX5	ENST00000261731	human	ensembl	69_37n	-1	known	frame_shift_del	c.149	p.L50fs	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX5	HGNC	ENSG00000089116	93	0	0	50	8	13.56	-	-	-	-	113909155	A	-	113909155	7	5	112	1	0	1	0	1	0	0	0	0	8829	304	11	0	1079	0	LHX5	12	113909155	Frame_Shift_Del	DEL	A	TCGA-A2-A4S1-01A-21D-A25Q-09	41818009	113909155	19942740	36	6879										
NCOR2	0	genome.wustl.edu	37	chr12	124816871	124816871	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	tgcaggccccttactgtattCaggctcattccggttgtggg	12	11	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	12	124816871	124816871	C	A	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	nonsense	c.6919	p.E2307*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	122	0	0	52	11	17.46	-	-	-	A	124816871	C	A	124816871	4	1	112	1	0	0	0	0	0	1	0	0	10308	835	29	2	666	2	NCOR2	12	124816871	Nonsense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	10907716	124816871	9035024	37	6880										
TMEM132D	0	genome.wustl.edu	37	chr12	129569157	129569157	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cgtcatctccagggggctgcTcaggtgctggtaggtgaagt	16	9	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	12	129569157	129569157	T	C	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.1534	p.S512G	0.057	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	81	0	0	58	7	10.77	-	-	-	C	129569157	T	C	129569157	3	2	112	1	0	0	0	0	1	0	0	0	16142	1551	54	5	1781	5	TMEM132D	12	129569157	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	4752286	129569157	4282738	38	6881										
CHFR	0	genome.wustl.edu	37	chr12	133418098	133418098	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gtattttaaaaacacgctctCttcacctccagtgctgaaag	6	11	2	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	12	133418098	133418098	C	A	SNP	CHFR	ENST00000535527	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	31	0	0	11	7	38.89	-	-	-	A	133418098	C	A	133418098	1	1	112	0	1	0	0	0	0	0	0	0	3366	928	32	2		2	CHFR	12	133418098	RNA	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	3848941	133418098	433797	39	6882										
ARGLU1	0	genome.wustl.edu	37	chr13	107210040	107210040	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	tttataaagaaacaacatacAaggaaggctgagctgaggaa	10	5	0	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	13	107210040	107210040	A	T	SNP	ARGLU1	ENST00000472226	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARGLU1	HGNC	ENSG00000134884	23	0	0	12	8	40	-	-	-	T	107210040	A	T	107210040	1	4	112	0	1	0	0	0	0	0	0	0	862	145	5	5		5	ARGLU1	13	107210040	RNA	SNP	A	TCGA-A2-A4S1-01A-21D-A25Q-09		107210040	7959838	40	6883										
POMT2	0	genome.wustl.edu	37	chr14	77762553	77762553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cggggtagaggtgcctgtggGagtgcagatagccgatggcc	19	8	0	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	14	77762553	77762553	G	A	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	missense	c.1070	p.S357F	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830	69	0	0	59	18	23.38	-	-	-	A	77762553	G	A	77762553	3	1	112	1	0	0	0	0	1	0	0	0	12320	1174	41	2	1234	2	POMT2	14	77762553	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		77762553	29586987	41	6884										
TC2N	0	genome.wustl.edu	37	chr14	92264128	92264128	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	caaatacaaacagccacttaCgttggaaccttccttggctg	7	12	0	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	14	92264128	92264128	C	A	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	splice_site	c.855+1	e7+1	0.996	-	-	-	no_errors	TC2N	HGNC	ENSG00000165929	67	0	0	38	5	11.63	-	-	-	A	92264128	C	A	92264128	5	1	112	1	0	0	0	0	0	0	1	0	15760	550	19	3	636	3	TC2N	14	92264128	Splice_Site	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	14501575	92264128	15085412	42	6885										
TP53BP1	0	genome.wustl.edu	37	chr15	43772084	43772084	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	agcatccacatcagacagccTggtataaccagagttggtgg	11	10	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	15	43772084	43772084	T	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.631	p.R211W	0.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	151	0	0	154	46	22.89	-	-	-	A	43772084	T	A	43772084	3	1	112	1	0	0	0	0	1	0	0	0	16479	1579	55	5	5394	5	TP53BP1	15	43772084	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09		43772084	58759308	43	6886										
SOX8	0	genome.wustl.edu	37	chr16	1034797	1034797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gaagctggagggacgccggcCggtggacagcgggcgccaga	20	11	0	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	16	1034797	1034797	C	T	SNP	SOX8	ENST00000293894	human	ensembl	69_37n	1	known	missense	c.752	p.P251L	0.011	NULL	pfam_HMG_superfamily,pfam_Sox_N,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX8	HGNC	ENSG00000005513	72	0	0	98	19	16.1	-	-	-	T	1034797	C	T	1034797	3	4	112	1	0	0	0	0	1	0	0	0	15046	652	23	1	762	1	SOX8	16	1034797	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		1034797	89319956	44	6887										
CETP	0	genome.wustl.edu	37	chr16	57003847	57003847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ctgtgactctggtagagtgcGgaccgatgcccctgactgct	13	12	1	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	16	57003847	57003847	G	A	SNP	CETP	ENST00000200676	human	ensembl	69_37n	1	known	missense	c.461	p.R154Q	0.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237	106	0	0	75	66	46.81	-	-	-	A	57003847	G	A	57003847	3	1	112	1	0	0	0	0	1	0	0	0	3306	1116	39	1	479	1	CETP	16	57003847	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	55969050	57003847	33350906	45	6888										
TP53	0	genome.wustl.edu	37	chr17	7577098	7577098	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	tcttcctctgtgcgccggtcTctcccaggacaggcacaaac	9	16	3	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	17	7577098	7577098	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.840	p.R280S	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	63	0	0	23	19	45.24	-	-	-	G	7577098	T	G	7577098	3	3	112	1	0	0	0	0	1	0	0	0	16477	1548	54	5	446	5	TP53	17	7577098	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09		7577098	73618112	46	6889										
SSH2	0	genome.wustl.edu	37	chr17	28022491	28022491	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acttaccagcctgatgttgtCttctgggcggagtaaaatga	11	8	2	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	17	28022491	28022491	C	A	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	missense	c.262	p.D88Y	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	39	0	0	20	11	35.48	-	-	-	A	28022491	C	A	28022491	3	1	112	1	0	0	0	0	1	0	0	0	15276	913	32	2	4057	2	SSH2	17	28022491	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	20445393	28022491	53172719	47	6890										
ANKFN1	0	genome.wustl.edu	37	chr17	54428239	54428239	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aacgcctgtacaggaacctcTctgagaaactgaaagggagc	11	10	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	17	54428239	54428239	T	G	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.310	p.S104A	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	31	0	0	17	11	39.29	-	-	-	G	54428239	T	G	54428239	3	3	112	1	0	0	0	0	1	0	0	0	625	1551	54	5	324	5	ANKFN1	17	54428239	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	26405748	54428239	26766971	48	6891										
SEH1L	0	genome.wustl.edu	37	chr18	12984155	12984155	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	taggttcaactattccaagtCttcagaattcattaaatgga	6	7	4	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	18	12984155	12984155	C	T	SNP	SEH1L	ENST00000399892	human	ensembl	69_37n	1	known	missense	c.1036	p.L346F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEH1L	HGNC	ENSG00000085415	64	0	0	47	6	11.32	-	-	-	T	12984155	C	T	12984155	3	4	112	1	0	0	0	0	1	0	0	0	14097	913	32	2	1066	2	SEH1L	18	12984155	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09		12984155	65093093	49	6892			1	10		2	2	26	C		5.006861e-05
SEH1L	0	genome.wustl.edu	37	chr18	12984180	12984180	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gaattcattaaatggatcttCtgctggcaggtaggctgctt	11	7	3	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	18	12984180	12984180	C	T	SNP	SEH1L	ENST00000399892	human	ensembl	69_37n	1	known	missense	c.1061	p.S354F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEH1L	HGNC	ENSG00000085415	62	0	0	43	6	12.24	-	-	-	T	12984180	C	T	12984180	3	4	112	1	0	0	0	0	1	0	0	0	14097	913	32	2	1091	2	SEH1L	18	12984180	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	25	12984180	65093068	50	6893			1	10		2	2	26	C		5.006861e-05
CSNK1G2	0	genome.wustl.edu	37	chr19	1978887	1978887	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	atggagtatgtgcacaccaaGagcctaatctaccgggacgt	11	10	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	19	1978887	1978887	G	A	SNP	CSNK1G2	ENST00000589385	human	ensembl	69_37n	1	novel	missense	c.520	p.E174K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSNK1G2	HGNC	ENSG00000133275	44	0	0	38	9	19.15	-	-	-	A	1978887	G	A	1978887	3	1	112	1	0	0	0	0	1	0	0	0	3987	933	33	2	495	2	CSNK1G2	19	1978887	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		1978887	57150096	51	6894										
GTPBP3	0	genome.wustl.edu	37	chr19	17448867	17448867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	agcccccggctccggcgccaCcatcttcgcgctaagctctg	10	19	2	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	19	17448867	17448867	C	A	SNP	GTPBP3	ENST00000358792	human	ensembl	69_37n	1	known	missense	c.104	p.T35N	1.000	pfam_GTP-bd_TrmE_N	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299	29	0	0	26	12	31.58	-	-	-	A	17448867	C	A	17448867	3	1	112	1	0	0	0	0	1	0	0	0	6932	507	18	4	110	4	GTPBP3	19	17448867	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	15469980	17448867	41680116	52	6895										
RASGRP4	0	genome.wustl.edu	37	chr19	38911597	38911597	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cagctcctgggtgtcccctgTggccttctggtatttgagtt	12	11	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	19	38911597	38911597	T	G	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	missense	c.328	p.T110P	0.547	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	102	0	0	72	12	14.29	-	-	-	G	38911597	T	G	38911597	3	3	112	1	0	0	0	0	1	0	0	0	13160	1696	59	5	1749	5	RASGRP4	19	38911597	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09	21462730	38911597	20217386	53	6896										
KIR3DL2	0	genome.wustl.edu	37	chr19	55365320	55365320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	cacttctttctgcacagagaGgggatctctgaggacccctc	10	13	3	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	19	55365320	55365320	G	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.474	p.E158D	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	17	0	0	8	3	27.27	-	-	-	T	55365320	G	T	55365320	3	4	112	1	0	0	0	0	1	0	0	0	8374	991	35	4	488	4	KIR3DL2	19	55365320	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	16453723	55365320	3763663	54	6897										
NLRP5	0	genome.wustl.edu	37	chr19	56565030	56565030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aaagtgtcatctcaccgccgCgtgctgtgagagtctgtcct	11	12	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	19	56565030	56565030	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	missense	c.3155	p.A1052V	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	68	0	0	29	36	55.38	-	-	-	T	56565030	C	T	56565030	3	4	112	1	0	0	0	0	1	0	0	0	10552	768	27	1	3205	1	NLRP5	19	56565030	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	1199710	56565030	2563953	55	6898										
ADAMTS1	0	genome.wustl.edu	37	chr21	28210246	28210246	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acccatgctgaaaaagtgggGatagcattgaaagattcctt	10	7	0	3			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	21	28210246	28210246	G	C	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	missense	c.2556	p.I852M	0.954	superfamily_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	97	0	0	65	30	31.58	-	-	-	C	28210246	G	C	28210246	3	2	112	1	0	0	0	0	1	0	0	0	255	1164	41	2	351	2	ADAMTS1	21	28210246	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		28210246	19919649	56	6899										
PITPNB	0	genome.wustl.edu	37	chr22	28315170	28315170	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	acccactcacaattccttgaTcagcaccatcttcccggaac	4	17	3	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	22	28315170	28315170	T	A	SNP	PITPNB	ENST00000320996	human	ensembl	69_37n	-1	known	missense	c.10	p.I4F	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNB	HGNC	ENSG00000180957	62	0	0	30	25	45.45	-	-	-	A	28315170	T	A	28315170	3	1	112	1	0	0	0	0	1	0	0	0	12022	1435	50	5	849	5	PITPNB	22	28315170	Missense_Mutation	SNP	T	TCGA-A2-A4S1-01A-21D-A25Q-09		28315170	22989396	57	6900										
CASK	0	genome.wustl.edu	37	chrX	41530686	41530686	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ttaaagcagtcttacctccaGctacaagtccagactcccct	5	15	1	1			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	X	41530686	41530686	G	C	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.527	p.A176G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	140	0	0	73	28	27.72	-	-	-	C	41530686	G	C	41530686	3	2	112	1	0	0	0	0	1	0	0	0	2690	971	34	4	2341	4	CASK	23	41530686	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09		41530686	113739874	58	6901										
FUNDC1	0	genome.wustl.edu	37	chrX	44386524	44386524	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	ttcaggtgctgctttgttcgCtcgtttcttaatctgtcttt	8	9	4	0			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	X	44386524	44386524	C	A	SNP	FUNDC1	ENST00000378045	human	ensembl	69_37n	-1	known	missense	c.349	p.A117S	1.000	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC1	HGNC	ENSG00000069509	67	0	0	38	18	32.14	-	-	-	A	44386524	C	A	44386524	3	1	112	1	0	0	0	0	1	0	0	0	6146	797	28	4	126	4	FUNDC1	23	44386524	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	2855838	44386524	110884036	59	6902										
MAGED1	0	genome.wustl.edu	37	chrX	51644929	51644929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	gaatgcccgctccagattccCtcagacctttgccggtccca	8	17	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	X	51644929	51644929	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	missense	c.2408	p.P803L	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	73	0	0	46	23	33.33	-	-	-	T	51644929	C	T	51644929	3	4	112	1	0	0	0	0	1	0	0	0	9254	681	24	4	2454	4	MAGED1	23	51644929	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	7258405	51644929	103625631	60	6903										
PCDH11X	0	genome.wustl.edu	37	chrX	91456404	91456404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	aggttgtgcgatcttgcaccCccatgaaagagtctacaact	9	11	2	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	X	91456404	91456404	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3064	p.P1022T	0.182	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	97	0	0	80	12	13.04	-	-	-	A	91456404	C	A	91456404	3	1	112	1	0	0	0	0	1	0	0	0	11581	623	22	4	3156	4	PCDH11X	23	91456404	Missense_Mutation	SNP	C	TCGA-A2-A4S1-01A-21D-A25Q-09	39811475	91456404	63814156	61	6904										
IGSF1	0	genome.wustl.edu	37	chrX	130409477	130409477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	6	0.520686212944282	1.48502994011976	0.675013609145346	1.95398676331547	0.131221719457014	0.62934362934363	0	actaggagttccagggtgttGctaggttgtatcttgataga	13	5	1	2			TCGA-A2-A4S1-01A-21D-A25Q-09	TCGA-A2-A4S1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3a3dd048-d442-48aa-a6fe-40fcfbe48c7a	413a32b3-920e-41ae-b24d-321a0796645a	X	130409477	130409477	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3174	p.S1058R	1.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	98	0	0	69	14	16.87	-	-	-	T	130409477	G	T	130409477	3	4	112	1	0	0	0	0	1	0	0	0	7650	1310	46	4	871	4	IGSF1	23	130409477	Missense_Mutation	SNP	G	TCGA-A2-A4S1-01A-21D-A25Q-09	38953073	130409477	24861083	62	6905										
SYNC	0	genome.wustl.edu	37	chr1	33160553	33160553	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ttttgcaggcggagctgccgGgcctctgcttgcaggggtct	16	11	2	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	33160553	33160553	G	A	SNP	SYNC	ENST00000409190	human	ensembl	69_37n	-1	known	silent	c.1146	p.A382	0.467	pfam_F	pfam_F	-	no_errors	SYNC	HGNC	ENSG00000162520	58	0	0	44	10	18.52	-	-	-	A	33160553	G	A	33160553	2	1	113	1	0	0	0	0	0	0	0	1	15535	1219	43	4		4	SYNC	1	33160553	Silent	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		33160553	216090068	1	6906										
DOCK7	0	genome.wustl.edu	37	chr1	63090858	63090858	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ccatacatgtatagtacaatCactacctttctgaaattaaa	3	9	2	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	63090858	63090858	C	T	SNP	DOCK7	ENST00000464312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	43	0	0	27	4	12.9	-	-	-	T	63090858	C	T	63090858	1	4	113	0	1	0	0	0	0	0	0	0	4727	841	29	2		2	DOCK7	1	63090858	RNA	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09	29930305	63090858	186159763	2	6907										
FLG	0	genome.wustl.edu	37	chr1	152283148	152283148	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ctgacactgactgtgtgtctGagtcttctgaatgtccctca	9	11	4	4			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	152283148	152283148	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	nonsense	c.4214	p.S1405*	0.029	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	254	0	0	316	53	14.36	-	-	-	T	152283148	G	T	152283148	4	4	113	1	0	0	0	0	0	1	0	0	5968	1294	45	2	7975	2	FLG	1	152283148	Nonsense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	89192290	152283148	96967473	3	6908										
FLAD1	0	genome.wustl.edu	37	chr1	154956253	154956253	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gatctggttagagaagactaGggtcttcctcgaaggaagca	13	7	2	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	154956253	154956253	G	C	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	missense	c.83	p.R28T	0.001	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	46	0	0	42	10	19.23	-	-	-	C	154956253	G	C	154956253	3	2	113	1	0	0	0	0	1	0	0	0	5966	1000	35	4	85	4	FLAD1	1	154956253	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	2673105	154956253	94294368	4	6909										
CLK2	0	genome.wustl.edu	37	chr1	155233769	155233769	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gtttgcagttctcacgaacaTagcgcccagctgatgtgttc	10	11	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	155233769	155233769	T	C	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.1289	p.Y430C	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	54	0	0	31	35	53.03	-	-	-	C	155233769	T	C	155233769	3	2	113	1	0	0	0	0	1	0	0	0	3567	1406	49	5	218	5	CLK2	1	155233769	Missense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09	277516	155233769	94016852	5	6910										
GLUL	0	genome.wustl.edu	37	chr1	182353775	182353775	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	atccagttagacgtcgggcaTtgtccaggcctcccttggga	12	12	0	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	182353775	182353775	T	C	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	missense	c.887	p.N296S	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	74	0	0	69	10	12.66	-	-	-	C	182353775	T	C	182353775	3	2	113	1	0	0	0	0	1	0	0	0	6530	1493	52	5	238	5	GLUL	1	182353775	Missense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09	27120006	182353775	66896846	6	6911										
TAF1B	0	genome.wustl.edu	37	chr2	10008444	10008444	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gtcattcagactgggctagtGagcctgagctgctaagtgat	13	8	2	4			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	10008444	10008444	G	A	SNP	TAF1B	ENST00000263663	human	ensembl	69_37n	1	known	missense	c.439	p.E147K	0.933	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	31	0	0	22	3	12	-	-	-	A	10008444	G	A	10008444	3	1	113	1	0	0	0	0	1	0	0	0	15612	1291	45	2	461	2	TAF1B	2	10008444	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		10008444	233190929	7	6912										
MARCO	0	genome.wustl.edu	37	chr2	119735465	119735465	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gggggtctcattggcccaaaAggggaaactggaactaaggg	16	7	1	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	119735465	119735465	A	G	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	1	known	silent	c.720	p.K240	0.990	NULL	pfam_Collagen,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MARCO	HGNC	ENSG00000019169	39	0	0	18	8	30.77	-	-	-	G	119735465	A	G	119735465	2	3	113	1	0	0	0	0	0	0	0	1	9382	69	3	5		5	MARCO	2	119735465	Silent	SNP	A	TCGA-A2-A4S2-01A-12D-A25Q-09	109727021	119735465	123463908	8	6913										
ANKRD28	0	genome.wustl.edu	37	chr3	15736712	15736712	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tacaacatctagaggagtttCacttgcaatctgaaataaaa	6	7	3	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	3	15736712	15736712	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1678	p.E560K	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	37	0	0	36	5	12.2	-	-	-	T	15736712	C	T	15736712	3	4	113	1	0	0	0	0	1	0	0	0	656	835	29	2	1634	2	ANKRD28	3	15736712	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		15736712	182285718	9	6914										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	67	0	0	47	14	22.95	-	-	-	A	178936091	G	A	178936091	3	1	113	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	163199379	178936091	19086339	10	6915										
PCDHB2	0	genome.wustl.edu	37	chr5	140474744	140474744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	agttttttcaggcggagctaCggattagggacgtaaatgat	13	5	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	5	140474744	140474744	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.370	p.R124W	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	37	0	0	35	5	12.5	-	-	-	T	140474744	C	T	140474744	3	4	113	1	0	0	0	0	1	0	0	0	11615	527	19	1	372	1	PCDHB2	5	140474744	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		140474744	40440516	11	6916										
TBC1D22B	0	genome.wustl.edu	37	chr6	37252159	37252159	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	aggaagttgaccctgcagcgGaagcgggaggaatattttgg	16	6	0	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	37252159	37252159	G	T	SNP	TBC1D22B	ENST00000373491	human	ensembl	69_37n	1	known	silent	c.720	p.R240	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	59	0	0	33	5	13.16	-	-	-	T	37252159	G	T	37252159	2	4	113	1	0	0	0	0	0	0	0	1	15704	1161	41	2		2	TBC1D22B	6	37252159	Silent	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		37252159	133862908	12	6917										
ENPP4	0	genome.wustl.edu	37	chr6	46108830	46108830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	aactgaaaaactgtagccctCatatgaatgtttatctcaaa	5	8	2	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	46108830	46108830	C	T	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.868	p.H290Y	0.996	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	33	0	0	35	13	27.08	-	-	-	T	46108830	C	T	46108830	3	4	113	1	0	0	0	0	1	0	0	0	5169	826	29	2	874	2	ENPP4	6	46108830	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09	8856671	46108830	125006237	13	6918										
AIM1	0	genome.wustl.edu	37	chr6	106967352	106967352	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	aaaccaaagttaccgtctcgGaagaagagattctgccagca	9	10	2	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	106967352	106967352	G	A	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.1045	p.E349K	0.003	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	31	0	0	15	3	16.67	-	-	-	A	106967352	G	A	106967352	3	1	113	1	0	0	0	0	1	0	0	0	430	1175	41	2	1051	2	AIM1	6	106967352	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	60858522	106967352	64147715	14	6919										
LRRC17	0	genome.wustl.edu	37	chr7	102574414	102574414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ttttgcaaagcggctgagctGcgcaaagcaagcccaggcag	13	11	0	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	7	102574414	102574414	G	A	SNP	LRRC17	ENST00000339431	human	ensembl	69_37n	1	known	silent	c.54	p.L18	0.969	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606	72	0	0	58	16	21.62	-	-	-	A	102574414	G	A	102574414	2	1	113	1	0	0	0	0	0	0	0	1	9039	1306	46	4		4	LRRC17	7	102574414	Silent	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		102574414	56564249	15	6920										
TNKS	0	genome.wustl.edu	37	chr8	9627729	9627729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	cattggtagaccgagcgtcaAtgggctggcatatgctgaat	13	8	1	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	8	9627729	9627729	A	G	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	missense	c.3854	p.N1285S	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	41	0	0	24	16	40	-	-	-	G	9627729	A	G	9627729	3	3	113	1	0	0	0	0	1	0	0	0	16414	101	4	5	3956	5	TNKS	8	9627729	Missense_Mutation	SNP	A	TCGA-A2-A4S2-01A-12D-A25Q-09		9627729	136736293	16	6921										
NINJ1	0	genome.wustl.edu	37	chr9	95887400	95887400	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	agcccagacgcagcgccccaGcctgggacagtggaagggga	16	13	0	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	9	95887400	95887400	G	A	SNP	NINJ1	ENST00000489274	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NINJ1	HGNC	ENSG00000131669	65	0	0	53	23	30.26	-	-	-	A	95887400	G	A	95887400	1	1	113	0	1	0	0	0	0	0	0	0	10490	986	34	4		4	NINJ1	9	95887400	RNA	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		95887400	45326031	17	6922										
NT5C2	0	genome.wustl.edu	37	chr10	104850710	104850710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	taccttaatacgtctctggaTggaactgatgtctggacgct	10	9	2	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	10	104850710	104850710	T	C	SNP	NT5C2	ENST00000343289	human	ensembl	69_37n	-1	known	missense	c.1255	p.I419V	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685	29	0	0	23	4	14.81	-	-	-	C	104850710	T	C	104850710	3	2	113	1	0	0	0	0	1	0	0	0	10760	1464	51	5	442	5	NT5C2	10	104850710	Missense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09		104850710	30684037	18	6923										
QSER1	0	genome.wustl.edu	37	chr11	32979425	32979425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	aacattgcagaactgttcaaGctaagccaagtagtagcagt	9	8	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	32979425	32979425	G	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.4375	p.A1459S	0.136	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	33	0	0	33	4	10.81	-	-	-	T	32979425	G	T	32979425	3	4	113	1	0	0	0	0	1	0	0	0	12965	971	34	4	4397	4	QSER1	11	32979425	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		32979425	102027091	19	6924										
AHNAK	0	genome.wustl.edu	37	chr11	62294600	62294600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tcaatttgccctctggtcccTcaatgtcaatgtctggccca	7	14	5	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	62294600	62294600	T	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.7289	p.E2430A	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	106	0	0	89	31	25.83	-	-	-	G	62294600	T	G	62294600	3	3	113	1	0	0	0	0	1	0	0	0	414	1551	54	5	10503	5	AHNAK	11	62294600	Missense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09	29315175	62294600	72711916	20	6925										
SPTBN2	0	genome.wustl.edu	37	chr11	66466533	66466533	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ggcccagaaattgctgcgctGcgtcttgattcttcttgtgc	11	11	3	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	66466533	66466533	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.3797	p.A1266E	0.975	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	45	0	0	28	17	37.78	-	-	-	T	66466533	G	T	66466533	3	4	113	1	0	0	0	0	1	0	0	0	15211	1319	46	4	3455	4	SPTBN2	11	66466533	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	4171933	66466533	68539983	21	6926										
BCL9L	0	genome.wustl.edu	37	chr11	118779095	118779095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	agctgaaagggggcacccctGcctgggggttcttcagactt	14	11	2	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	118779095	118779095	G	A	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.296	p.A99V	0.985	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	63	0	0	37	8	17.78	-	-	-	A	118779095	G	A	118779095	3	1	113	1	0	0	0	0	1	0	0	0	1386	1319	46	4	4231	4	BCL9L	11	118779095	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	52312562	118779095	16227421	22	6927										
CHD4	0	genome.wustl.edu	37	chr12	6710219	6710219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gcttcctccgagcattgggaCctaaaatcaggatatatcca	8	11	1	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	6710219	6710219	C	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.800	p.G267V	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	61	0	0	39	21	35	-	-	-	A	6710219	C	A	6710219	3	1	113	1	0	0	0	0	1	0	0	0	3356	521	18	4	5074	4	CHD4	12	6710219	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		6710219	127141676	23	6928										
CD163L1	0	genome.wustl.edu	37	chr12	7559399	7559399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	attttcagctctactctcccCatacagcggttagttccacc	5	15	3	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	7559399	7559399	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.816	p.M272I	0.014	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	29	0	0	25	6	19.35	-	-	-	T	7559399	C	T	7559399	3	4	113	1	0	0	0	0	1	0	0	0	2997	594	21	4	3605	4	CD163L1	12	7559399	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09	849180	7559399	126292496	24	6929										
TBX3	0	genome.wustl.edu	37	chr12	115118792	115118793	+	Frame_Shift_Ins	INS	-	-	CT													0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tgtccgggtgaatgtacatcINSctctttggcatttcggggtc							TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	115118792	115118793	-	CT	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.549_548	p.M184fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	52	0	0	39	11	22	-	-	-	CT	115118793	-	CT	115118792	7	5	113	1	0	1	1	0	0	0	0	0	15754	854	30	0	1710	0	TBX3	12	115118792	Frame_Shift_Ins	INS	-	TCGA-A2-A4S2-01A-12D-A25Q-09	107559393	115118792	18733103	25	6930										
NYNRIN	0	genome.wustl.edu	37	chr14	24884073	24884073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ccctttcggaggagatcctgCggtgcctcagcctccatgat	11	14	1	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	24884073	24884073	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.3118	p.R1040W	1.000	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	57	0	0	39	18	31.58	-	-	-	T	24884073	C	T	24884073	3	4	113	1	0	0	0	0	1	0	0	0	10869	759	27	1	3148	1	NYNRIN	14	24884073	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		24884073	82465467	26	6931										
FOXA1	0	genome.wustl.edu	37	chr14	38061222	38061223	+	Frame_Shift_Del	DEL	TT	TT	-													0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ggcggcgcaagtagcagccgTtctcgaacatgttgccggag							TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	38061222	38061223	TT	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.767_766	p.N256fs	1.000:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	67	0	0	61	11	15.07	-	-	-	-	38061223	TT	-	38061222	7	5	113	1	0	1	0	1	0	0	0	0	6035	1725	60	0	655	0	FOXA1	14	38061222	Frame_Shift_Del	DEL	TT	TCGA-A2-A4S2-01A-12D-A25Q-09	13177149	38061222	69288318	27	6932	54	2								
FOXA1	0	genome.wustl.edu	37	chr14	38061225	38061228	+	Frame_Shift_Del	DEL	TCGA	TCGA	-													0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ggcgcaagtagcagccgttcTcgaacatgttgccggagtcc							TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	TCGA	TCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	38061225	38061228	TCGA	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.764_761	p.F254fs	1.000:1.000:1.000:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	72	0	0	65	11	14.1	-	-	-	-	38061228	TCGA	-	38061225	7	5	113	1	0	1	0	1	0	0	0	0	6035	1551	54	0	658	0	FOXA1	14	38061225	Frame_Shift_Del	DEL	TCGA	TCGA-A2-A4S2-01A-12D-A25Q-09	3	38061225	69288315	28	6933	54	2								
TRAPPC6B	0	genome.wustl.edu	37	chr14	39623467	39623467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	cagacatctgagtaagcaggCgaaatttgttgtcctgaagt	11	7	1	3			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	39623467	39623467	C	T	SNP	TRAPPC6B	ENST00000330149	human	ensembl	69_37n	-1	novel	missense	c.299	p.R100H	0.936	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	-	no_errors	TRAPPC6B	HGNC	ENSG00000182400	22	0	0	17	4	19.05	-	-	-	T	39623467	C	T	39623467	3	4	113	1	0	0	0	0	1	0	0	0	16560	768	27	1	189	1	TRAPPC6B	14	39623467	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09	1562242	39623467	67726073	29	6934										
PALB2	0	genome.wustl.edu	37	chr16	23647523	23647523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ctgttctttgtataggtaatCctcctgggccatctccaggg	10	11	2	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	16	23647523	23647523	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.344	p.G115E	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	103	0	0	91	19	17.27	-	-	-	T	23647523	C	T	23647523	3	4	113	1	0	0	0	0	1	0	0	0	11479	855	30	2	3256	2	PALB2	16	23647523	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		23647523	66707230	30	6935										
CDH1	0	genome.wustl.edu	37	chr16	68867258	68867258	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tctctgctcgtgtttgactaTgaaggaagcggttccgaagc	12	9	1	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	16	68867258	68867258	T	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.2505	p.Y835*	0.988	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	83	0	0	28	27	49.09	-	-	-	A	68867258	T	A	68867258	4	1	113	1	0	0	0	0	0	1	0	0	3124	1471	51	5	2567	5	CDH1	16	68867258	Nonsense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09	45219735	68867258	21487495	31	6936										
GSDMB	0	genome.wustl.edu	37	chr17	38063216	38063216	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	cttggctatcacccttacctAaacaggatgaagcaccatcc	6	14	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	17	38063216	38063216	A	G	SNP	GSDMB	ENST00000360317	human	ensembl	69_37n	-1	known	missense	c.725	p.L242S	0.094	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMB	HGNC	ENSG00000073605	23	0	0	24	7	22.58	-	-	-	G	38063216	A	G	38063216	3	3	113	1	0	0	0	0	1	0	0	0	6868	372	13	5	545	5	GSDMB	17	38063216	Missense_Mutation	SNP	A	TCGA-A2-A4S2-01A-12D-A25Q-09		38063216	43131994	32	6937										
SLC25A41	0	genome.wustl.edu	37	chr19	6430137	6430137	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	accatgctctgtagccccccCagcaggttggtgaagttcgt	11	13	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	6430137	6430137	C	A	SNP	SLC25A41	ENST00000458275	human	ensembl	69_37n	-1	known	missense	c.497	p.W166L	0.984	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	83	0	0	67	17	20.24	-	-	-	A	6430137	C	A	6430137	3	1	113	1	0	0	0	0	1	0	0	0	14595	581	21	4	733	4	SLC25A41	19	6430137	Missense_Mutation	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		6430137	52698846	33	6938										
CPAMD8	0	genome.wustl.edu	37	chr19	17062885	17062885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ccacgaagaagggcttgaagGtcttcagcagggagggctcg	16	9	2	2			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	17062885	17062885	G	T	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.2543	p.T848N	1.000	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	54	0	0	37	13	25.49	-	-	-	T	17062885	G	T	17062885	3	4	113	1	0	0	0	0	1	0	0	0	3825	1261	44	4	3347	4	CPAMD8	19	17062885	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	10632748	17062885	42066098	34	6939										
SYMPK	0	genome.wustl.edu	37	chr19	46333417	46333417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tcggtaaggggcttcagcacGtcgctgagacggaaaatttt	13	8	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	46333417	46333417	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	silent	c.1644	p.D548	0.086	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	183	0	0	149	40	21.16	-	-	-	A	46333417	G	A	46333417	2	1	113	1	0	0	0	0	0	0	0	1	15531	1136	40	1		1	SYMPK	19	46333417	Silent	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	29270532	46333417	12795566	35	6940										
USP29	0	genome.wustl.edu	37	chr19	57640903	57640903	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	acagcaactgcagcaggggtTccccaatttgggaaacacct	10	12	0	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	57640903	57640903	T	C	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	missense	c.860	p.F287S	0.978	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	57	0	0	36	16	30.77	-	-	-	C	57640903	T	C	57640903	3	2	113	1	0	0	0	0	1	0	0	0	17156	1783	62	5	862	5	USP29	19	57640903	Missense_Mutation	SNP	T	TCGA-A2-A4S2-01A-12D-A25Q-09	11307486	57640903	1488080	36	6941										
WISP2	0	genome.wustl.edu	37	chr20	43353470	43353470	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	tgcagcatccgctgccgctgCgaggacggcggcttcacctg	14	15	1	0			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	20	43353470	43353470	C	T	SNP	WISP2	ENST00000190983	human	ensembl	69_37n	1	known	silent	c.369	p.C123	0.002	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205	177	0	0	137	49	26.34	-	-	-	T	43353470	C	T	43353470	2	4	113	1	0	0	0	0	0	0	0	1	17470	776	27	1		1	WISP2	20	43353470	Silent	SNP	C	TCGA-A2-A4S2-01A-12D-A25Q-09		43353470	19672050	37	6942										
PRKX	0	genome.wustl.edu	37	chrX	3592644	3592644	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	caggaggggactcacagcctGatgaggaacgggtggctgac	17	9	1	3			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	3592644	3592644	G	A	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	silent	c.330	p.I110	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	99	0	0	84	31	26.96	-	-	-	A	3592644	G	A	3592644	2	1	113	1	0	0	0	0	0	0	0	1	12608	1280	45	2		2	PRKX	23	3592644	Silent	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09		3592644	151677916	38	6943										
FAM47A	0	genome.wustl.edu	37	chrX	34149179	34149179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	ggcggagatggcacactccaGtcttgggaggcactgggtgg	18	9	1	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	34149179	34149179	G	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1217	p.T406N	0.048	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	107	0	0	117	46	28.22	-	-	-	T	34149179	G	T	34149179	3	4	113	1	0	0	0	0	1	0	0	0	5615	1029	36	4	1162	4	FAM47A	23	34149179	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	30556535	34149179	121121381	39	6944										
RPL36A	0	genome.wustl.edu	37	chrX	100646803	100646803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	6	0.181923827489075	2.15504587155963	0	2.26846933848382	0.00466200466200466	0.0844340844340844	0	gcaaactaagccgattttccGgaaaaaggtgagtggtagtt	12	6	0	1			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	100646803	100646803	G	A	SNP	RPL36A	ENST00000427805	human	ensembl	69_37n	1	known	missense	c.278	p.R93Q	1.000	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	-	no_errors	RPL36A	HGNC	ENSG00000241343	72	0	0	52	10	16.13	-	-	-	A	100646803	G	A	100646803	3	1	113	1	0	0	0	0	1	0	0	0	13673	1116	39	1	180	1	RPL36A	23	100646803	Missense_Mutation	SNP	G	TCGA-A2-A4S2-01A-12D-A25Q-09	66497624	100646803	54623757	40	6945										
SLC45A1	0	genome.wustl.edu	37	chr1	8385447	8385447	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctttcattcttgtcctggctAtaggtctgttgttttggcat	9	8	3	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	8385447	8385447	A	G	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	1	known	missense	c.589	p.I197V	0.725	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	53	0	0	13	11	45.83	-	-	-	G	8385447	A	G	8385447	3	3	114	1	0	0	0	0	1	0	0	0	14729	449	16	5	493	5	SLC45A1	1	8385447	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09		8385447	240865174	1	6946										
DMBX1	0	genome.wustl.edu	37	chr1	46977811	46977811	+	Missense_Mutation	SNP	G	G	A													0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gtccccgctgagcctcttccGtctgcaggagcaattccgcc							TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	46977811	46977811	G	A	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	1	known	missense	c.794	p.R265H	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	133	0	0	37	37	50	-	-	-	A	46977811	G	A	46977811	3	1	114	1	0	0	0	0	1	0	0	0	4614	1145	40	1	808	1	DMBX1	1	46977811	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	38592364	46977811	202272810	2	6947	55	2								
DMBX1	0	genome.wustl.edu	37	chr1	46977813	46977813	+	Silent	SNP	C	C	T													0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ccccgctgagcctcttccgtCtgcaggagcaattccgccag							TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	46977813	46977813	C	T	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	1	known	silent	c.796	p.L266	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	135	0	0	40	38	48.72	-	-	-	T	46977813	C	T	46977813	2	4	114	1	0	0	0	0	0	0	0	1	4614	912	32	2		2	DMBX1	1	46977813	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	2	46977813	202272808	3	6948	55	2								
RPAP2	0	genome.wustl.edu	37	chr1	92789425	92789425	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aaagcgtcagaaaattctgaAagtgaatacagtaggtcaga	10	5	3	4			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	92789425	92789425	A	T	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	missense	c.948	p.E316D	0.076	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	19	0	0	9	6	40	-	-	-	T	92789425	A	T	92789425	3	4	114	1	0	0	0	0	1	0	0	0	13628	11	1	5	978	5	RPAP2	1	92789425	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	45811612	92789425	156461196	4	6949										
ATP1A1	0	genome.wustl.edu	37	chr1	116931552	116931552	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctcctcgctcactggtgaatCagaaccccagactaggtctc	8	15	3	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	116931552	116931552	C	G	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	nonsense	c.665	p.S222*	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	27	0	0	22	10	31.25	-	-	-	G	116931552	C	G	116931552	4	3	114	1	0	0	0	0	0	1	0	0	1132	838	29	2	707	2	ATP1A1	1	116931552	Nonsense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	24142127	116931552	132319069	5	6950										
PTGFRN	0	genome.wustl.edu	37	chr1	117504034	117504034	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	agcgacaatgtggtgaccagCgagctgcttgcagtcatgga	14	9	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	117504034	117504034	C	T	SNP	PTGFRN	ENST00000393203	human	ensembl	69_37n	1	known	silent	c.1383	p.S461	0.683	smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PTGFRN	HGNC	ENSG00000134247	66	0	0	47	17	26.56	-	-	-	T	117504034	C	T	117504034	2	4	114	1	0	0	0	0	0	0	0	1	12831	767	27	1		1	PTGFRN	1	117504034	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	572482	117504034	131746587	6	6951										
KCNN3	0	genome.wustl.edu	37	chr1	154680665	154680665	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gcggtgagatgctccagcttCgactccaggctgccaatctg	12	13	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	154680665	154680665	C	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.1983	p.S661	0.426	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	49	0	0	36	19	34.55	-	-	-	T	154680665	C	T	154680665	2	4	114	1	0	0	0	0	0	0	0	1	8134	871	31	1		1	KCNN3	1	154680665	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	37176631	154680665	94569956	7	6952										
COPA	0	genome.wustl.edu	37	chr1	160261648	160261648	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tgttctagagtctctttgggCagcttcttcctttctgtctc	8	11	5	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	160261648	160261648	C	T	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.3246	p.L1082	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	101	0	0	95	28	22.76	-	-	-	T	160261648	C	T	160261648	2	4	114	1	0	0	0	0	0	0	0	1	3757	697	25	4		4	COPA	1	160261648	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	5580983	160261648	88988973	8	6953										
SERPINC1	0	genome.wustl.edu	37	chr1	173878701	173878701	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tagacaaacctgggagtttgGacttttcagggctgaacaga	12	7	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	173878701	173878701	G	C	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.1142	p.S381C	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	31	0	0	37	5	11.63	-	-	-	C	173878701	G	C	173878701	3	2	114	1	0	0	0	0	1	0	0	0	14197	1174	41	2	264	2	SERPINC1	1	173878701	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	13617053	173878701	75371920	9	6954										
PTPN7	0	genome.wustl.edu	37	chr1	202130671	202130671	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggcaggctccttgcgggccaGcagcccagccggttcatgct	14	15	1	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	202130671	202130671	G	T	SNP	PTPN7	ENST00000477554	human	ensembl	69_37n	-1	putative	nonsense	c.39	p.C13*	0.242	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon	PTPN7	HGNC	ENSG00000143851	52	0	0	62	9	12.68	-	-	-	T	202130671	G	T	202130671	4	4	114	1	0	0	0	0	0	1	0	0	12876	986	34	4		4	PTPN7	1	202130671	Nonsense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	28251970	202130671	47119950	10	6955										
VSNL1	0	genome.wustl.edu	37	chr2	17836578	17836578	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tggataagaacaaagatgacCagattacactggatgaattc	9	6	0	5			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	17836578	17836578	C	G	SNP	VSNL1	ENST00000295156	human	ensembl	69_37n	1	known	missense	c.493	p.Q165E	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	VSNL1	HGNC	ENSG00000163032	8	0	0	24	5	17.24	-	-	-	G	17836578	C	G	17836578	3	3	114	1	0	0	0	0	1	0	0	0	17324	595	21	4	503	4	VSNL1	2	17836578	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09		17836578	225362795	11	6956										
ZNF638	0	genome.wustl.edu	37	chr2	71576941	71576941	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	caataatcggtcctttttctCagttgagagtggaaccaaga	9	8	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	71576941	71576941	C	T	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.857	p.S286L	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	53	0	0	35	4	10.26	-	-	-	T	71576941	C	T	71576941	3	4	114	1	0	0	0	0	1	0	0	0	18151	838	29	2	859	2	ZNF638	2	71576941	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	53740363	71576941	171622432	12	6957										
EXOC6B	0	genome.wustl.edu	37	chr2	72802668	72802668	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	atccagaattcctgaatcctGttcagacttcggactagtac	7	11	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	72802668	72802668	G	A	SNP	EXOC6B	ENST00000272427	human	ensembl	69_37n	-1	known	nonsense	c.799	p.Q267*	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036	94	0	0	37	21	36.21	-	-	-	A	72802668	G	A	72802668	4	1	114	1	0	0	0	0	0	1	0	0	5345	1386	48	4	1700	4	EXOC6B	2	72802668	Nonsense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	1225727	72802668	170396705	13	6958										
TRIM43	0	genome.wustl.edu	37	chr2	96265165	96265165	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tccccagtgtttcctcactaCatagagaaacctctgggccg	8	14	2	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	96265165	96265165	C	T	SNP	TRIM43	ENST00000272395	human	ensembl	69_37n	1	known	silent	c.1185	p.Y395	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM43	HGNC	ENSG00000144015	8	0	0	7	5	41.67	-	-	-	T	96265165	C	T	96265165	2	4	114	1	0	0	0	0	0	0	0	1	16614	489	17	4		4	TRIM43	2	96265165	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	23462497	96265165	146934208	14	6959										
IL18R1	0	genome.wustl.edu	37	chr2	103013176	103013176	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttactgacttcacattcttgCcccaatcactaaagcttttg	4	12	3	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	103013176	103013176	C	A	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	1	known	missense	c.1456	p.P486T	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	54	0	0	28	15	34.88	-	-	-	A	103013176	C	A	103013176	3	1	114	1	0	0	0	0	1	0	0	0	7701	739	26	4	1494	4	IL18R1	2	103013176	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	6748011	103013176	140186197	15	6960										
PPIG	0	genome.wustl.edu	37	chr2	170470979	170470979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gatgatttccaaaagaacaaCgaaaccaactcctcatttag	5	10	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	170470979	170470979	C	G	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	1	known	missense	c.383	p.T128R	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	35	0	0	28	4	12.5	-	-	-	G	170470979	C	G	170470979	3	3	114	1	0	0	0	0	1	0	0	0	12401	536	19	3	405	3	PPIG	2	170470979	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	67457803	170470979	72728394	16	6961										
ZNF804A	0	genome.wustl.edu	37	chr2	185800789	185800789	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tttgcatttccaaagaaagcGtccgtgaagctagagtcctc	9	10	0	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	185800789	185800789	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	silent	c.666	p.A222	0.003	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	42	0	0	23	22	48.89	-	-	-	A	185800789	G	A	185800789	2	1	114	1	0	0	0	0	0	0	0	1	18263	1132	40	1		1	ZNF804A	2	185800789	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	15329810	185800789	57398584	17	6962										
FSIP2	0	genome.wustl.edu	37	chr2	186627943	186627943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttcaggccaaggttcaattaTttcagcgcaggtatcaccca	8	11	4	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	186627943	186627943	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.1541	p.I514T	0.149	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	34	0	0	33	4	10.81	-	-	-	C	186627943	T	C	186627943	3	2	114	1	0	0	0	0	1	0	0	0	6124	1493	52	5	1587	5	FSIP2	2	186627943	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	827154	186627943	56571430	18	6963										
EEF1B2	0	genome.wustl.edu	37	chr2	207026111	207026111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tttgggcaaatatggtcctgCcgatgtggaagacactacag	12	8	0	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	207026111	207026111	C	T	SNP	EEF1B2	ENST00000236957	human	ensembl	69_37n	1	known	missense	c.245	p.A82V	0.884	NULL	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942	76	0	0	49	11	18.33	-	-	-	T	207026111	C	T	207026111	3	4	114	1	0	0	0	0	1	0	0	0	4960	739	26	4	255	4	EEF1B2	2	207026111	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	20398168	207026111	36173262	19	6964										
ITPR1	0	genome.wustl.edu	37	chr3	4836817	4836817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gcatttcgtttaacctggccGtcctgatgaacctgctggtg	11	11	0	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	4836817	4836817	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.6832	p.V2278I	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	114	0	0	134	39	22.54	-	-	-	A	4836817	G	A	4836817	3	1	114	1	0	0	0	0	1	0	0	0	7974	1145	40	1	7079	1	ITPR1	3	4836817	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		4836817	193185613	20	6965										
FBXL2	0	genome.wustl.edu	37	chr3	33416911	33416911	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttgaactgtccgcgactgcaGtgagtacactgcactttttg	10	10	0	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	33416911	33416911	G	T	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	1	known	splice_site	c.788+1	e10+1	1.000	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558	58	0	0	53	43	44.79	-	-	-	T	33416911	G	T	33416911	5	4	114	1	0	0	0	0	0	0	1	0	5762	1043	36	4	827	4	FBXL2	3	33416911	Splice_Site	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	28580094	33416911	164605519	21	6966										
ZNF167	0	genome.wustl.edu	37	chr3	44612064	44612064	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gactcactgaccaccagagaAcccatactggggagaaacct	9	13	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	44612064	44612064	A	G	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.1462	p.T488A	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	37	0	0	24	11	31.43	-	-	-	G	44612064	A	G	44612064	3	3	114	1	0	0	0	0	1	0	0	0	17837	43	2	5	1480	5	ZNF167	3	44612064	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	11195153	44612064	153410366	22	6967										
MGLL	0	genome.wustl.edu	37	chr3	127434754	127434754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	atgccttttccatcaagtgtTtcaaaatcctcgaatagtcc	5	11	2	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	127434754	127434754	T	G	SNP	MGLL	ENST00000496306	human	ensembl	69_37n	-1	novel	missense	c.139	p.N47H	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGLL	HGNC	ENSG00000074416	47	0	0	23	8	25.81	-	-	-	G	127434754	T	G	127434754	3	3	114	1	0	0	0	0	1	0	0	0	9627	1856	64	5		5	MGLL	3	127434754	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	82822690	127434754	70587676	23	6968										
GP5	0	genome.wustl.edu	37	chr3	194118419	194118419	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggttcgagtggagcagaagtCtctcgagcttagcctgtgct	14	9	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	194118419	194118419	C	G	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	missense	c.593	p.R198T	0.001	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	31	0	0	25	13	34.21	-	-	-	G	194118419	C	G	194118419	3	3	114	1	0	0	0	0	1	0	0	0	6633	913	32	2	1093	2	GP5	3	194118419	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	66683665	194118419	3904011	24	6969										
MUC4	0	genome.wustl.edu	37	chr3	195506483	195506483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	acctgtggatactgaggaagTgtcggtgacaggaagggggg	19	5	0	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	195506483	195506483	T	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11968	p.T3990A	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	12	0	0	18	9	31.03	-	-	-	C	195506483	T	C	195506483	3	2	114	1	0	0	0	0	1	0	0	0	10050	1696	59	5		5	MUC4	3	195506483	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	1388064	195506483	2515947	25	6970										
HS3ST1	0	genome.wustl.edu	37	chr4	11401364	11401364	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aatgctcctcccagtcgaagAagtggacctcgttctccgcg	10	14	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	11401364	11401364	A	T	SNP	HS3ST1	ENST00000002596	human	ensembl	69_37n	-1	known	missense	c.266	p.F89Y	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST1	HGNC	ENSG00000002587	57	0	0	28	5	15.15	-	-	-	T	11401364	A	T	11401364	3	4	114	1	0	0	0	0	1	0	0	0	7414	246	9	5	661	5	HS3ST1	4	11401364	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09		11401364	179752912	26	6971										
SLC34A2	0	genome.wustl.edu	37	chr4	25664351	25664351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	taacactgaggcacctgtaaCcaagattgaacttctgccgt	8	11	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	25664351	25664351	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	1	known	missense	c.137	p.T46I	0.005	NULL	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	43	0	0	35	17	32.69	-	-	-	T	25664351	C	T	25664351	3	4	114	1	0	0	0	0	1	0	0	0	14657	507	18	4	143	4	SLC34A2	4	25664351	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	14262987	25664351	165489925	27	6972										
GRXCR1	0	genome.wustl.edu	37	chr4	43032455	43032455	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tccgtgtgccatgggagcaaGatgtccatgtttcgaaactg	12	9	0	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	43032455	43032455	G	T	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	1	known	missense	c.771	p.K257N	1.000	superfamily_HSP_DnaJ_Cys-rich_dom	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	79	0	0	69	25	26.6	-	-	-	T	43032455	G	T	43032455	3	4	114	1	0	0	0	0	1	0	0	0	6863	933	33	2	785	2	GRXCR1	4	43032455	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	17368104	43032455	148121821	28	6973										
BBS12	0	genome.wustl.edu	37	chr4	123664881	123664881	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	acactgccaattactcatcaGaatttgaagccagcacatac	5	12	2	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	123664881	123664881	G	T	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	1	known	nonsense	c.1834	p.E612*	0.997	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	36	0	0	25	3	10.71	-	-	-	T	123664881	G	T	123664881	4	4	114	1	0	0	0	0	0	1	0	0	1341	943	33	2	1836	2	BBS12	4	123664881	Nonsense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	80632426	123664881	67489395	29	6974										
DCHS2	0	genome.wustl.edu	37	chr4	155219402	155219402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gacatatacttttataattaCagtggtgcttcgtgaaccct	7	8	0	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	155219402	155219402	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.4699	p.V1567I	0.062	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	58	0	0	44	18	29.03	-	-	-	T	155219402	C	T	155219402	3	4	114	1	0	0	0	0	1	0	0	0	4319	478	17	4	4083	4	DCHS2	4	155219402	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	31554521	155219402	35934874	30	6975										
LRAT	0	genome.wustl.edu	37	chr4	155665479	155665479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gacgccctcttccctgcaggAtgaagaaccccatgctggag	11	14	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	155665479	155665479	A	G	SNP	LRAT	ENST00000336356	human	ensembl	69_37n	1	known	missense	c.1	p.M1V	1.000	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207	42	0	0	26	12	31.58	-	-	-	G	155665479	A	G	155665479	3	3	114	1	0	0	0	0	1	0	0	0	8996	347	12	5	3	5	LRAT	4	155665479	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	446077	155665479	35488797	31	6976										
CMYA5	0	genome.wustl.edu	37	chr5	79084846	79084846	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aagttaacctccaacccaatGataactactttttctatgtg	4	10	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	79084846	79084846	G	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.11608	p.D3870H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	49	0	0	33	18	35.29	-	-	-	C	79084846	G	C	79084846	3	2	114	1	0	0	0	0	1	0	0	0	3620	1290	45	2	11646	2	CMYA5	5	79084846	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		79084846	101830414	32	6977										
SERINC5	0	genome.wustl.edu	37	chr5	79439630	79439630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctctcgatgttggcactttcGtagctgtggaaacaagacac	10	10	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	79439630	79439630	G	A	SNP	SERINC5	ENST00000512721	human	ensembl	69_37n	-1	novel	silent	c.1242	p.Y414	0.984	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	24	0	0	10	4	28.57	-	-	-	A	79439630	G	A	79439630	2	1	114	1	0	0	0	0	0	0	0	1	14171	1140	40	1		1	SERINC5	5	79439630	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	354784	79439630	101475630	33	6978										
OR2Y1	0	genome.wustl.edu	37	chr5	180166248	180166248	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ataaaaaagggcaacaaattTtccctcacgctcagaataat	5	9	2	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	180166248	180166248	T	C	SNP	OR2Y1	ENST00000307832	human	ensembl	69_37n	-1	known	missense	c.811	p.K271E	0.158	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339	53	0	0	28	18	39.13	-	-	-	C	180166248	T	C	180166248	3	2	114	1	0	0	0	0	1	0	0	0	11108	1850	64	5	128	5	OR2Y1	5	180166248	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	100726618	180166248	749012	34	6979										
HIST1H1E	0	genome.wustl.edu	37	chr6	26156885	26156885	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggtctcaagagcctggtgagCaagggcaccctggtgcagac	15	11	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	26156885	26156885	C	G	SNP	HIST1H1E	ENST00000304218	human	ensembl	69_37n	1	known	missense	c.267	p.S89R	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	92	0	0	63	25	28.41	-	-	-	G	26156885	C	G	26156885	3	3	114	1	0	0	0	0	1	0	0	0	7177	709	25	4	269	4	HIST1H1E	6	26156885	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09		26156885	144958182	35	6980										
CASP8AP2	0	genome.wustl.edu	37	chr6	90566870	90566870	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	agcacttatcaaaactgccaGagtggaaataaaccgcaagg	9	9	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	90566870	90566870	G	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	53	0	0	53	22	29.33	-	-	-	T	90566870	G	T	90566870	1	4	114	0	1	0	0	0	0	0	0	0	2703	942	33	2		2	CASP8AP2	6	90566870	RNA	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	64409985	90566870	80548197	36	6981										
FAM26D	0	genome.wustl.edu	37	chr6	116875493	116875493	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gtaagagatgaaatagctctTctgcacagataccagtcaca	8	9	3	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	116875493	116875493	T	C	SNP	FAM26D	ENST00000368596	human	ensembl	69_37n	1	known	silent	c.537	p.L179	1.000	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	32	0	0	21	3	12.5	-	-	-	C	116875493	T	C	116875493	2	2	114	1	0	0	0	0	0	0	0	1	5595	1798	62	5		5	FAM26D	6	116875493	Silent	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	26308623	116875493	54239574	37	6982										
SLC35F1	0	genome.wustl.edu	37	chr6	118588284	118588284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gaatgggctgcatggtgggaGcagatgtgcttgtgggaaga	19	4	0	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	118588284	118588284	G	A	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	missense	c.604	p.A202T	1.000	pfam_DUF914_euk	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	130	0	0	110	41	27.15	-	-	-	A	118588284	G	A	118588284	3	1	114	1	0	0	0	0	1	0	0	0	14677	971	34	4	618	4	SLC35F1	6	118588284	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	1712791	118588284	52526783	38	6983										
EGFR	0	genome.wustl.edu	37	chr7	55223574	55223574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	cgtccgagcctgtggggccgAcagctatgagatggaggaag	17	9	0	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	7	55223574	55223574	A	G	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	missense	c.941	p.D314G	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	85	0	0	69	28	28.57	-	-	-	G	55223574	A	G	55223574	3	3	114	1	0	0	0	0	1	0	0	0	5002	275	10	5	971	5	EGFR	7	55223574	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09		55223574	103915089	39	6984										
CSMD1	0	genome.wustl.edu	37	chr8	2824186	2824186	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tagccttcccagcaggcataGatgaccgagctggagaacag	12	11	0	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	2824186	2824186	G	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.7258	p.L2420I	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	64	0	0	35	5	12.5	-	-	-	T	2824186	G	T	2824186	3	4	114	1	0	0	0	0	1	0	0	0	3976	932	33	2	1740	2	CSMD1	8	2824186	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		2824186	143539836	40	6985										
INTS9	0	genome.wustl.edu	37	chr8	28627466	28627466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ccgctcaacaaaggcttcagGactttgcagtctggtacgtc	10	12	3	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	28627466	28627466	G	A	SNP	INTS9	ENST00000517383	human	ensembl	69_37n	-1	novel	missense	c.161	p.S54F	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS9	HGNC	ENSG00000104299	56	0	0	23	26	53.06	-	-	-	A	28627466	G	A	28627466	3	1	114	1	0	0	0	0	1	0	0	0	7839	1161	41	2	244	2	INTS9	8	28627466	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	25803280	28627466	117736556	41	6986										
FGFR1	0	genome.wustl.edu	37	chr8	38273484	38273484	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tcctctgggttgtggctgggGttgtagcagtattccagccc	14	10	1	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	38273484	38273484	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.1851	p.N617	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	62	0	0	111	18	13.95	-	-	-	A	38273484	G	A	38273484	2	1	114	1	0	0	0	0	0	0	0	1	5909	1252	44	4		4	FGFR1	8	38273484	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	9646018	38273484	108090538	42	6987										
OXR1	0	genome.wustl.edu	37	chr8	107715274	107715274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gaggtgatgtcagctgcaatGtacaaagaaattttggatag	12	4	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	107715274	107715274	G	A	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.819	p.M273I	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	59	0	0	58	20	25.64	-	-	-	A	107715274	G	A	107715274	3	1	114	1	0	0	0	0	1	0	0	0	11407	1377	48	4	1045	4	OXR1	8	107715274	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	69441790	107715274	38648748	43	6988										
CBWD1	0	genome.wustl.edu	37	chr9	121751	121751	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	atcaaagtcacattggtcctTggattaaccacttttctaaa	5	9	3	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	121751	121751	T	A	SNP	CBWD1	ENST00000475990	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785	34	0	0	26	6	18.18	-	-	-	A	121751	T	A	121751	1	1	114	0	1	0	0	0	0	0	0	0	2737	1827	63	5		5	CBWD1	9	121751	RNA	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09		121751	141091680	44	6989										
OR13J1	0	genome.wustl.edu	37	chr9	35870121	35870121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggatggcacagacagcaaagGagatggtcttccgggatgac	15	8	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	35870121	35870121	G	A	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.278	p.S93F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	37	0	0	32	12	27.27	-	-	-	A	35870121	G	A	35870121	3	1	114	1	0	0	0	0	1	0	0	0	11017	1174	41	2	663	2	OR13J1	9	35870121	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	35748370	35870121	105343310	45	6990										
DAPK1	0	genome.wustl.edu	37	chr9	90301529	90301529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gagtgtgaggagccgcagcaTgatgttcgagccgggtctta	16	8	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	90301529	90301529	T	C	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	missense	c.2288	p.M763T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	95	0	0	53	25	32.05	-	-	-	C	90301529	T	C	90301529	3	2	114	1	0	0	0	0	1	0	0	0	4267	1464	51	5	2366	5	DAPK1	9	90301529	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	54431408	90301529	50911902	46	6991										
ANP32B	0	genome.wustl.edu	37	chr9	100757043	100757043	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctcagtttcaaatctccccaAgctgcctaaattgaaaaagg	6	11	3	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	100757043	100757043	A	T	SNP	ANP32B	ENST00000339399	human	ensembl	69_37n	1	known	missense	c.185	p.K62M	1.000	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32B	HGNC	ENSG00000136938	65	0	0	46	7	13.21	-	-	-	T	100757043	A	T	100757043	3	4	114	1	0	0	0	0	1	0	0	0	705	72	3	5	191	5	ANP32B	9	100757043	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	10455514	100757043	40456388	47	6992										
ENG	0	genome.wustl.edu	37	chr9	130578203	130578203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gggcccggcatgctcactgtGggggcctggggtactcacgc	17	13	2	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	130578203	130578203	G	T	SNP	ENG	ENST00000344849	human	ensembl	69_37n	-1	known	missense	c.1871	p.P624Q	0.600	NULL	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	36	0	0	23	5	17.86	-	-	-	T	130578203	G	T	130578203	3	4	114	1	0	0	0	0	1	0	0	0	5154	1348	47	4	139	4	ENG	9	130578203	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	29821160	130578203	10635228	48	6993										
ZNF239	0	genome.wustl.edu	37	chr10	44053585	44053585	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	agatcctgaagtgttttctgCtgaagattctccacagaatt	8	8	2	5			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	44053585	44053585	C	T	SNP	ZNF239	ENST00000491188	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.654	-	-	-	no_errors	ZNF239	HGNC	ENSG00000196793	26	0	0	29	4	12.12	-	-	-	T	44053585	C	T	44053585	1	4	114	0	1	0	0	0	0	0	0	0	17887	812	28	4		4	ZNF239	10	44053585	RNA	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09		44053585	91481162	49	6994										
ANXA11	0	genome.wustl.edu	37	chr10	81915536	81915536	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	atttgtggatttgttagaaaCagacattcttttggcctttt	8	5	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	81915536	81915536	C	G	SNP	ANXA11	ENST00000463340	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANXA11	HGNC	ENSG00000122359	115	0	0	87	27	23.68	-	-	-	G	81915536	C	G	81915536	1	3	114	0	1	0	0	0	0	0	0	0	715	493	17	4		4	ANXA11	10	81915536	RNA	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	37861951	81915536	53619211	50	6995										
FAM24A	0	genome.wustl.edu	37	chr10	124672467	124672467	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tgtgacataaatgagggcctCtgacttgggaaagctgggca	14	7	1	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	124672467	124672467	C	A	SNP	FAM24A	ENST00000368894	human	ensembl	69_37n	1	known	silent	c.315	p.L105	0.088	NULL	NULL	-	no_errors	FAM24A	HGNC	ENSG00000203795	68	0	0	50	23	31.51	-	-	-	A	124672467	C	A	124672467	2	1	114	1	0	0	0	0	0	0	0	1	5590	900	32	2		2	FAM24A	10	124672467	Silent	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	42756931	124672467	10862280	51	6996										
C11orf9	0	genome.wustl.edu	37	chr11	61537881	61537881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	cagcgggatctgtacatgaaGgccgagcccccgatccccca	11	16	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	11	61537881	61537881	G	A	SNP	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	silent	c.624	p.K208	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	25	0	0	24	11	31.43	-	-	-	A	61537881	G	A	61537881	2	1	114	1	0	0	0	0	0	0	0	1	1682	991	35	4		4	C11orf9	11	61537881	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		61537881	73468635	52	6997										
TMEM25	0	genome.wustl.edu	37	chr11	118404580	118404580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctttctccacaggcccctccCggcacccatctctgatatca	5	19	3	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	11	118404580	118404580	C	A	SNP	TMEM25	ENST00000526853	human	ensembl	69_37n	1	putative	missense	c.317	p.P106Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM25	HGNC	ENSG00000149582	72	0	0	28	24	46.15	-	-	-	A	118404580	C	A	118404580	3	1	114	1	0	0	0	0	1	0	0	0	16245	643	23	3	832	3	TMEM25	11	118404580	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	56866699	118404580	16601936	53	6998										
MDM1	0	genome.wustl.edu	37	chr12	68696589	68696589	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	agaatcttcccgcaaaggcaGaggatcaactgtttttatac	8	9	2	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	12	68696589	68696589	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	silent	c.1783	p.L595	0.820	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	35	0	0	27	15	35.71	-	-	-	A	68696589	G	A	68696589	2	1	114	1	0	0	0	0	0	0	0	1	9483	933	33	2		2	MDM1	12	68696589	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		68696589	65155306	54	6999										
MTERFD3	0	genome.wustl.edu	37	chr12	107371522	107371522	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gtactatctgtggtgttaatTcaagaaccattggcgtctct	9	8	3	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	12	107371522	107371522	T	A	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	missense	c.971	p.E324V	1.000	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	98	0	0	88	39	30.71	-	-	-	A	107371522	T	A	107371522	3	1	114	1	0	0	0	0	1	0	0	0	9993	1783	62	5	190	5	MTERFD3	12	107371522	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	38674933	107371522	26480373	55	7000										
PSPC1	0	genome.wustl.edu	37	chr13	20283700	20283700	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	acctcccatgtttattgctcCacggggacccatatcaccca	6	16	1	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	13	20283700	20283700	C	A	SNP	PSPC1	ENST00000338910	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.G400*	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390	98	0	0	77	48	38.4	-	-	-	A	20283700	C	A	20283700	4	1	114	1	0	0	0	0	0	1	0	0	12796	603	21	4	385	4	PSPC1	13	20283700	Nonsense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09		20283700	94886178	56	7001										
TRIM9	0	genome.wustl.edu	37	chr14	51561358	51561358	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggcatagccgggggaaacacGcggacgccgttgggggactt	18	10	0	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	14	51561358	51561358	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	69_37n	-1	known	silent	c.300	p.R100	0.191	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	68	0	0	35	16	31.37	-	-	-	A	51561358	G	A	51561358	2	1	114	1	0	0	0	0	0	0	0	1	16645	1074	38	1		1	TRIM9	14	51561358	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		51561358	55788182	57	7002										
RIN3	0	genome.wustl.edu	37	chr14	93107614	93107614	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ccttcacactgcggctacccCaggccatccttgaggccagc	9	18	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	14	93107614	93107614	C	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	missense	c.472	p.Q158K	1.000	pfscan_SH2	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	78	0	0	28	22	44	-	-	-	A	93107614	C	A	93107614	3	1	114	1	0	0	0	0	1	0	0	0	13459	595	21	4	490	4	RIN3	14	93107614	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	41546256	93107614	14241926	58	7003										
AQR	0	genome.wustl.edu	37	chr15	35198909	35198909	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aagcatacatcatgcttacgAagacctggtaagatataaag	8	7	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	15	35198909	35198909	A	G	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	silent	c.1668	p.L556	0.998	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	87	0	0	30	23	43.4	-	-	-	G	35198909	A	G	35198909	2	3	114	1	0	0	0	0	0	0	0	1	837	233	9	5		5	AQR	15	35198909	Silent	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09		35198909	67332483	59	7004										
MYO5A	0	genome.wustl.edu	37	chr15	52659300	52659300	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttgcttcagcaaagtattttCttccttcagatttgatacca	5	9	3	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	15	52659300	52659300	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.3088	p.E1030K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	116	0	0	43	27	38.57	-	-	-	T	52659300	C	T	52659300	3	4	114	1	0	0	0	0	1	0	0	0	10150	922	32	2	2555	2	MYO5A	15	52659300	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	17460391	52659300	49872092	60	7005										
COG7	0	genome.wustl.edu	37	chr16	23457182	23457182	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aattttttaatgtcctccttGacaagaatcatctgttcttt	4	8	3	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	23457182	23457182	G	T	SNP	COG7	ENST00000307149	human	ensembl	69_37n	-1	known	silent	c.270	p.V90	0.999	pfam_COG_su7	pfam_COG_su7	-	no_errors	COG7	HGNC	ENSG00000168434	51	0	0	61	19	23.75	-	-	-	T	23457182	G	T	23457182	2	4	114	1	0	0	0	0	0	0	0	1	3693	1277	45	2		2	COG7	16	23457182	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		23457182	66897571	61	7006										
PRKCB	0	genome.wustl.edu	37	chr16	24196452	24196452	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ataattgcttatcagccctaTgggaagtccgtggattggtg	12	7	1	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	24196452	24196452	T	C	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	silent	c.1554	p.Y518	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	116	0	0	79	33	29.46	-	-	-	C	24196452	T	C	24196452	2	2	114	1	0	0	0	0	0	0	0	1	12589	1471	51	5		5	PRKCB	16	24196452	Silent	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	739270	24196452	66158301	62	7007										
CD19	0	genome.wustl.edu	37	chr16	28948386	28948386	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	aggcctggggggcactgcccCgtcttatggaaacccgagca	14	13	1	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	28948386	28948386	C	G	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	missense	c.1127	p.P376R	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	41	0	0	31	19	38	-	-	-	G	28948386	C	G	28948386	3	3	114	1	0	0	0	0	1	0	0	0	3002	652	23	3	1157	3	CD19	16	28948386	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	4751934	28948386	61406367	63	7008										
HIRIP3	0	genome.wustl.edu	37	chr16	30005877	30005877	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gggttctgcctcgctctcctCactttcttccctggcctgct	8	17	4	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	30005877	30005877	C	T	SNP	HIRIP3	ENST00000279392	human	ensembl	69_37n	-1	known	missense	c.589	p.E197K	0.008	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929	163	0	0	142	59	29.35	-	-	-	T	30005877	C	T	30005877	3	4	114	1	0	0	0	0	1	0	0	0	7172	835	29	2	1097	2	HIRIP3	16	30005877	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	1057491	30005877	60348876	64	7009										
KIAA0753	0	genome.wustl.edu	37	chr17	6503709	6503709	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	agatagattacctgggccttGaccaagagaggcttcaaacg	11	9	1	4			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	6503709	6503709	G	C	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	silent	c.2079	p.V693	0.929	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	48	0	0	24	8	25	-	-	-	C	6503709	G	C	6503709	2	2	114	1	0	0	0	0	0	0	0	1	8243	1277	45	2		2	KIAA0753	17	6503709	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		6503709	74691501	65	7010										
TP53	0	genome.wustl.edu	37	chr17	7578536	7578536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggccagttggcaaaacatctTgttgagggcaggggagtact	15	7	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	7578536	7578536	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.394	p.K132E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	33	0	0	20	12	37.5	-	-	-	C	7578536	T	C	7578536	3	2	114	1	0	0	0	0	1	0	0	0	16477	1821	63	5	904	5	TP53	17	7578536	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	1074827	7578536	73616674	66	7011										
CSF3	0	genome.wustl.edu	37	chr17	38172764	38172764	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tgcttgagccaactccatagCggccttttcctctaccaggg	9	14	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	38172764	38172764	C	G	SNP	CSF3	ENST00000225474	human	ensembl	69_37n	1	known	missense	c.339	p.S113R	0.000	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_IL6_MGF_GCSF	-	no_errors	CSF3	HGNC	ENSG00000108342	56	0	0	18	23	54.76	-	-	-	G	38172764	C	G	38172764	3	3	114	1	0	0	0	0	1	0	0	0	3968	767	27	3	353	3	CSF3	17	38172764	Missense_Mutation	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	30594228	38172764	43022446	67	7012										
KRTAP17-1	0	genome.wustl.edu	37	chr17	39471766	39471767	+	Frame_Shift_Ins	INS	-	-	C													0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gcagctgcccccgcagccagINSagcccccgcagccagagccc							TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	39471766	39471767	-	C	INS	KRTAP17-1	ENST00000334202	human	ensembl	69_37n	-1	known	frame_shift_ins	c.137_136	p.S46fs	0.000:0.001	NULL	NULL	-	no_errors	KRTAP17-1	HGNC	ENSG00000186860	18	0	0	14	3	17.65	-	-	-	C	39471767	-	C	39471766	7	5	114	1	0	1	1	0	0	0	0	0	8580	942	33	0	184	0	KRTAP17-1	17	39471766	Frame_Shift_Ins	INS	-	TCGA-A2-A4S3-01A-21D-A25Q-09	1299002	39471766	41723444	68	7013										
BAIAP2	0	genome.wustl.edu	37	chr17	79079916	79079916	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ctcctacacccgggtcttggAcagcgatggcagtgacaggc	13	13	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	79079916	79079916	A	T	SNP	BAIAP2	ENST00000321300	human	ensembl	69_37n	1	known	missense	c.1307	p.D436V	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866	52	0	0	60	17	21.79	-	-	-	T	79079916	A	T	79079916	3	4	114	1	0	0	0	0	1	0	0	0	1305	275	10	5	1349	5	BAIAP2	17	79079916	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	39608150	79079916	2115294	69	7014										
LAMA1	0	genome.wustl.edu	37	chr18	7013948	7013948	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gtctctgtaacccaaggaacActgatcgcaggcccggccac	10	15	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	18	7013948	7013948	A	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.3229	p.C1077G	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	52	0	0	32	8	20	-	-	-	C	7013948	A	C	7013948	3	2	114	1	0	0	0	0	1	0	0	0	8659	159	6	5	6162	5	LAMA1	18	7013948	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09		7013948	71063300	70	7015										
RGL3	0	genome.wustl.edu	37	chr19	11507967	11507967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gctgatagtcacaggcccagGgctggggcacattgtgcttc	14	11	1	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	11507967	11507967	G	A	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	missense	c.1985	p.P662L	0.113	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	61	0	0	60	15	20	-	-	-	A	11507967	G	A	11507967	3	1	114	1	0	0	0	0	1	0	0	0	13361	1232	43	4	173	4	RGL3	19	11507967	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		11507967	47621016	71	7016										
OR7A17	0	genome.wustl.edu	37	chr19	14991371	14991371	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttgcacttgtgtgtgagttgTgggttgcagcagaagtaagg	16	4	0	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	14991371	14991371	T	C	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	missense	c.797	p.H266R	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	81	0	0	62	24	27.91	-	-	-	C	14991371	T	C	14991371	3	2	114	1	0	0	0	0	1	0	0	0	11288	1696	59	5	134	5	OR7A17	19	14991371	Missense_Mutation	SNP	T	TCGA-A2-A4S3-01A-21D-A25Q-09	3483404	14991371	44137612	72	7017										
FXYD3	0	genome.wustl.edu	37	chr19	35613803	35613803	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ggggctcccctcccctgaccActcagctctccccaacaggt	8	20	2	1			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	35613803	35613803	A	G	SNP	FXYD3	ENST00000346446	human	ensembl	69_37n	1	known	missense	c.232	p.T78A	0.000	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD3	HGNC	ENSG00000089356	29	0	0	32	13	28.89	-	-	-	G	35613803	A	G	35613803	3	3	114	1	0	0	0	0	1	0	0	0	6168	159	6	5	514	5	FXYD3	19	35613803	Missense_Mutation	SNP	A	TCGA-A2-A4S3-01A-21D-A25Q-09	20622432	35613803	23515180	73	7018										
SPATA2	0	genome.wustl.edu	37	chr20	48524761	48524761	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	cccaccgtctccagcatgctGaaggcgccgtgcagagcccg	12	17	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	20	48524761	48524761	G	A	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	silent	c.267	p.F89	0.994	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	32	0	0	31	8	20.51	-	-	-	A	48524761	G	A	48524761	2	1	114	1	0	0	0	0	0	0	0	1	15096	1281	45	2		2	SPATA2	20	48524761	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		48524761	14500759	74	7019										
PRIC285	0	genome.wustl.edu	37	chr20	62195420	62195420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	gggggactgcccccgccgccGtgcaggtggtggccgaggtg	20	13	0	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	20	62195420	62195420	G	A	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	silent	c.4755	p.H1585	0.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	64	0	0	32	13	28.89	-	-	-	A	62195420	G	A	62195420	2	1	114	1	0	0	0	0	0	0	0	1	12566	1136	40	1		1	PRIC285	20	62195420	Silent	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	13670659	62195420	830100	75	7020										
WDR44	0	genome.wustl.edu	37	chrX	117527021	117527021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	tatctactaaagattttgccGctgtggaagaagtggcccct	10	9	1	2			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	117527021	117527021	G	A	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.613	p.A205T	0.637	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	30	0	0	13	22	62.86	-	-	-	A	117527021	G	A	117527021	3	1	114	1	0	0	0	0	1	0	0	0	17393	1087	38	1	627	1	WDR44	23	117527021	Missense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09		117527021	37743539	76	7021										
SLC25A14	0	genome.wustl.edu	37	chrX	129506981	129506981	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ttctactcctttgcccttttCccgtgttctaatgtattttg	5	11	2	0			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	129506981	129506981	C	A	SNP	SLC25A14	ENST00000465988	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078	113	0	0	67	10	12.99	-	-	-	A	129506981	C	A	129506981	1	1	114	0	1	0	0	0	0	0	0	0	14565	870	30	2		2	SLC25A14	23	129506981	RNA	SNP	C	TCGA-A2-A4S3-01A-21D-A25Q-09	11979960	129506981	25763579	77	7022										
FATE1	0	genome.wustl.edu	37	chrX	150884628	150884628	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.116883116883117	9	0.250745699741526	1.68925739005047	2.59360730593607	1.32081853543041	1	1	0	ccaacaccaaggcggagatgGaaatgtccctggcagaagaa	12	10	0	3			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	150884628	150884628	G	T	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	nonsense	c.37	p.E13*	0.001	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	40	0	0	35	4	10.26	-	-	-	T	150884628	G	T	150884628	4	4	114	1	0	0	0	0	0	1	0	0	5739	1175	41	2	39	2	FATE1	23	150884628	Nonsense_Mutation	SNP	G	TCGA-A2-A4S3-01A-21D-A25Q-09	21377647	150884628	4385932	78	7023										
ZC3H12A	0	genome.wustl.edu	37	chr1	37941282	37941282	+	Frame_Shift_Del	DEL	C	C	-													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ccggaagctgggctattcatCcacggagatccacagcgtcc							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	37941282	37941282	C	-	DEL	ZC3H12A	ENST00000373082	human	ensembl	69_37n	1	known	frame_shift_del	c.185	p.T63fs	0.013	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	37	0	0	10	2	16.67	-	-	-	-	37941282	C	-	37941282	7	5	115	1	0	1	0	1	0	0	0	0	17657	855	30	0	187	0	ZC3H12A	1	37941282	Frame_Shift_Del	DEL	C	TCGA-A7-A0CD-01A-11W-A019-09		37941282	211309339	1	7024										
LPHN2	0	genome.wustl.edu	37	chr1	82456779	82456779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ttaacaaagaagggtgtattCcagaaggagatgttagagaa	12	3	0	4			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	82456779	82456779	C	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.4375	p.P1459T	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	84	0	0	65	24	26.97	-	-	-	A	82456779	C	A	82456779	3	1	115	1	0	0	0	0	1	0	0	0	8982	855	30	2	4236	2	LPHN2	1	82456779	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	44515497	82456779	166793842	2	7025										
C1orf53	0	genome.wustl.edu	37	chr1	197875018	197875018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ggtgaatgttgtggctctgcGtgcagacatgtgagtagcaa	15	6	1	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	197875018	197875018	G	A	SNP	C1orf53	ENST00000436652	human	ensembl	69_37n	1	putative	missense	c.166	p.V56M	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf53	HGNC	ENSG00000203724	197	0	0	112	23	17.04	-	-	-	A	197875018	G	A	197875018	3	1	115	1	0	0	0	0	1	0	0	0	2065	1132	40	1	363	1	C1orf53	1	197875018	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	115418239	197875018	51375603	3	7026										
RGPD3	0	genome.wustl.edu	37	chr2	107051114	107051116	+	In_Frame_Del	DEL	AAC	AAC	-													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	agtgcaagattccaataagaAacaacactttttatagattc							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	2	107051114	107051116	AAC	-	DEL	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	in_frame_del	c.2037_2035	p.V679in_frame_del	1.000:1.000:1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	8	0	0	5	3	37.5	-	-	-	-	107051116	AAC	-	107051114	7	5	115	1	0	1	0	1	0	0	0	0	13370	1	1	0	3279	0	RGPD3	2	107051114	In_Frame_Del	DEL	AAC	TCGA-A7-A0CD-01A-11W-A019-09		107051114	136148259	4	7027										
CD200R1	0	genome.wustl.edu	37	chr3	112648015	112648015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	aatctggtgatgtgaaatacCtcaatatatgatgctcctta	7	7	2	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	3	112648015	112648015	C	G	SNP	CD200R1	ENST00000440122	human	ensembl	69_37n	-1	known	missense	c.542	p.R181T	0.001	NULL	NULL	-	no_errors	CD200R1	HGNC	ENSG00000163606	561	0	0	337	257	43.27	-	-	-	G	112648015	C	G	112648015	3	3	115	1	0	0	0	0	1	0	0	0	3010	681	24	4	571	4	CD200R1	3	112648015	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09		112648015	85374415	5	7028										
PLXNA1	0	genome.wustl.edu	37	chr3	126724942	126724943	+	Frame_Shift_Del	DEL	CT	CT	-													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	gagaccagcgggtggtgaaaCtctacctaaagtccaaggag							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	3	126724942	126724943	CT	-	DEL	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	frame_shift_del	c.1918_1919	p.Y641fs	1.000:1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	9	0	0	1	3	75	-	-	-	-	126724943	CT	-	126724942	7	5	115	1	0	1	0	1	0	0	0	0	12193	565	20	0	1944	0	PLXNA1	3	126724942	Frame_Shift_Del	DEL	CT	TCGA-A7-A0CD-01A-11W-A019-09	14076927	126724942	71297488	6	7029										
NIPBL	0	genome.wustl.edu	37	chr5	37006526	37006526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ggagagagttacaaaatcagCggatgcttgtcttacaacta	10	7	2	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	37006526	37006526	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.3923	p.A1308V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	102	0	0	60	31	34.07	-	-	-	T	37006526	C	T	37006526	3	4	115	1	0	0	0	0	1	0	0	0	10500	768	27	1	3985	1	NIPBL	5	37006526	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09		37006526	143908734	7	7030										
AFF4	0	genome.wustl.edu	37	chr5	132232866	132232866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cactgaagaggcgggtgacaCtttatgtgggttcactttat	12	7	1	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	132232866	132232866	C	T	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	missense	c.1456	p.V486M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	137	0	0	179	121	40.33	-	-	-	T	132232866	C	T	132232866	3	4	115	1	0	0	0	0	1	0	0	0	359	565	20	4	2079	4	AFF4	5	132232866	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	95226340	132232866	48682394	8	7031										
FGF18	0	genome.wustl.edu	37	chr5	170883698	170883698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	acccgggagaaccagcaggaCgtgcatttcatgaagcgcta	12	11	1	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	170883698	170883698	C	T	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	silent	c.513	p.D171	0.882	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	47	0	0	19	19	50	-	-	-	T	170883698	C	T	170883698	2	4	115	1	0	0	0	0	0	0	0	1	5892	535	19	1		1	FGF18	5	170883698	Silent	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	38650832	170883698	10031562	9	7032										
CARD11	0	genome.wustl.edu	37	chr7	2983933	2983933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	atggctaagttgtagttgtcGtccttcaccttgaccagctc	9	11	1	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	2983933	2983933	G	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.597	p.D199	0.968	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	77	0	0	13	42	76.36	-	-	-	A	2983933	G	A	2983933	2	1	115	1	0	0	0	0	0	0	0	1	2670	1136	40	1		1	CARD11	7	2983933	Silent	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09		2983933	156154730	10	7033										
CPSF4	0	genome.wustl.edu	37	chr7	99054076	99054076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	gtggcgagaaaggacactacGccaacagatgcaccaaaggg	13	10	0	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	99054076	99054076	G	A	SNP	CPSF4	ENST00000292476	human	ensembl	69_37n	1	known	missense	c.763	p.A255T	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917	34	0	0	5	20	80	-	-	-	A	99054076	G	A	99054076	3	1	115	1	0	0	0	0	1	0	0	0	3858	1087	38	1	793	1	CPSF4	7	99054076	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	96070143	99054076	60084587	11	7034										
LAMB1	0	genome.wustl.edu	37	chr7	107638937	107638937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	tatgaagcattttttgtcctCctacaaacaaagttgagttc	6	8	0	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	107638937	107638937	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	126	0	0	22	14	38.89	-	-	-	T	107638937	C	T	107638937	3	4	115	1	0	0	0	0	1	0	0	0	8664	869	30	2	5270	2	LAMB1	7	107638937	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	8584861	107638937	51499726	12	7035										
ATG9B	0	genome.wustl.edu	37	chr7	150718275	150718276	+	RNA	INS	-	-	G													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	acacagccacccagctcaccINSggggggatgtgcagggcctc							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	150718275	150718276	-	G	INS	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	18	0	0	6	2	25	-	-	-	G	150718276	-	G	150718275	6	5	115	0	1	1	1	0	0	0	0	0	1107	666	23	0		0	ATG9B	7	150718275	RNA	INS	-	TCGA-A7-A0CD-01A-11W-A019-09	43079338	150718275	8420388	13	7036										
NLRP10	0	genome.wustl.edu	37	chr11	7982638	7982638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ttgtctttccagtgccagccGacccctgtagcacaactaag	8	14	1	0			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	11	7982638	7982638	G	A	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	106	0	0	110	77	41.18	-	-	-	A	7982638	G	A	7982638	3	1	115	1	0	0	0	0	1	0	0	0	10544	1059	37	1	1450	1	NLRP10	11	7982638	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09		7982638	127023878	14	7037										
PRKRIR	0	genome.wustl.edu	37	chr11	76062581	76062581	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	tggttgccaaatttgtggctTcctcaaaccaaaattcatga	7	9	2	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	11	76062581	76062581	T	A	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1613	p.E538V	1.000	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	221	0	0	199	134	40.24	-	-	-	A	76062581	T	A	76062581	3	1	115	1	0	0	0	0	1	0	0	0	12607	1783	62	5	676	5	PRKRIR	11	76062581	Missense_Mutation	SNP	T	TCGA-A7-A0CD-01A-11W-A019-09	68079943	76062581	58943935	15	7038										
FOXM1	0	genome.wustl.edu	37	chr12	2977870	2977870	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	atgtaagagtagggtggccgCtcagacacagagttctgcca	13	9	2	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	12	2977870	2977870	C	T	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	silent	c.705	p.E235	0.613	smart_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	106	0	0	90	76	45.78	-	-	-	T	2977870	C	T	2977870	2	4	115	1	0	0	0	0	0	0	0	1	6066	796	28	4		4	FOXM1	12	2977870	Silent	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09		2977870	130874025	16	7039										
HSD11B2	0	genome.wustl.edu	37	chr16	67470244	67470245	+	Frame_Shift_Ins	INS	-	-	G													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cagctgtgaactccttccctINSggggggtcaaggtcagcatc							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	16	67470244	67470245	-	G	INS	HSD11B2	ENST00000326152	human	ensembl	69_37n	1	known	frame_shift_ins	c.757_758	p.V255fs	1.000:1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	-	no_errors	HSD11B2	HGNC	ENSG00000176387	43	0	0	18	2	10	-	-	-	G	67470245	-	G	67470244	7	5	115	1	0	1	1	0	0	0	0	0	7428	1580	55	0	771	0	HSD11B2	16	67470244	Frame_Shift_Ins	INS	-	TCGA-A7-A0CD-01A-11W-A019-09		67470244	22884509	17	7040										
NEURL4	0	genome.wustl.edu	37	chr17	7227492	7227492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cgacgacagcatagacgcccGggggcacgttccaggcagca	14	14	0	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	7227492	7227492	G	A	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.1997	p.P666L	0.998	superfamily_ConA-like_lec_gl,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	22	0	0	7	5	41.67	-	-	-	A	7227492	G	A	7227492	3	1	115	1	0	0	0	0	1	0	0	0	10419	1116	39	1	2767	1	NEURL4	17	7227492	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09		7227492	73967718	18	7041										
POLR2A	0	genome.wustl.edu	37	chr17	7412461	7412461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	agctggatcggaagcacatgActgaccggaagctcaccatg	12	11	1	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	7412461	7412461	A	G	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	missense	c.3664	p.T1222A	1.000	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_7	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	86	0	0	3	37	92.5	-	-	-	G	7412461	A	G	7412461	3	3	115	1	0	0	0	0	1	0	0	0	12288	275	10	5	3746	5	POLR2A	17	7412461	Missense_Mutation	SNP	A	TCGA-A7-A0CD-01A-11W-A019-09	184969	7412461	73782749	19	7042										
MYH3	0	genome.wustl.edu	37	chr17	10543517	10543517	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	agtttcatccagggccagtgCttgacgttcatgaatgagcg	12	9	2	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	10543517	10543517	C	T	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.2478	p.K826	0.999	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	231	0	0	33	93	73.81	-	-	-	T	10543517	C	T	10543517	2	4	115	1	0	0	0	0	0	0	0	1	10108	796	28	4		4	MYH3	17	10543517	Silent	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	3131056	10543517	70651693	20	7043										
ORMDL3	0	genome.wustl.edu	37	chr17	38079470	38079470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	tcgccttgccctggtccgggGtctcaaagggtgtccccttc	12	15	1	0			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	38079470	38079470	G	A	SNP	ORMDL3	ENST00000304046	human	ensembl	69_37n	-1	known	missense	c.221	p.T74I	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL3	HGNC	ENSG00000172057	93	0	0	74	19	20.43	-	-	-	A	38079470	G	A	38079470	3	1	115	1	0	0	0	0	1	0	0	0	11344	1261	44	4	248	4	ORMDL3	17	38079470	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	27535953	38079470	43115740	21	7044										
SCN4A	0	genome.wustl.edu	37	chr17	62034875	62034875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cttggccagcttgaagacccGcagctgccaagcagggaggg	15	12	0	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	62034875	62034875	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.2023	p.R675W	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	26	0	0	12	20	62.5	-	-	-	A	62034875	G	A	62034875	3	1	115	1	0	0	0	0	1	0	0	0	14008	1086	38	1	3535	1	SCN4A	17	62034875	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	23955405	62034875	19160335	22	7045										
COG1	0	genome.wustl.edu	37	chr17	71199175	71199175	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	tcacccagtcattacttctaGatgatgctggctcagttctg	8	11	5	2			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	71199175	71199175	G	A	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.2110	p.D704N	0.796	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	49	0	0	46	60	56.6	-	-	-	A	71199175	G	A	71199175	3	1	115	1	0	0	0	0	1	0	0	0	3687	942	33	2	2140	2	COG1	17	71199175	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	9164300	71199175	9996035	23	7046										
CBX4	0	genome.wustl.edu	37	chr17	77808750	77808751	+	Frame_Shift_Ins	INS	-	-	G													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ggggccggcatcattccgttINSgggggggcccttctcggagc							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	77808750	77808751	-	G	INS	CBX4	ENST00000269397	human	ensembl	69_37n	-1	known	frame_shift_ins	c.691_690	p.N230fs	1.000:1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582	21	0	0	14	2	12.5	-	-	-	G	77808751	-	G	77808750	7	5	115	1	0	1	1	0	0	0	0	0	2745	1812	63	0	995	0	CBX4	17	77808750	Frame_Shift_Ins	INS	-	TCGA-A7-A0CD-01A-11W-A019-09	6609575	77808750	3386460	24	7047										
ZNF208	0	genome.wustl.edu	37	chr19	22157191	22157191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	gcactcttataataagtaagGgttgaggaccagttaaaagc	10	6	1	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	19	22157191	22157191	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.645	p.T215	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	501	1	0.2	308	199	39.25	-	-	-	T	22157191	G	T	22157191	2	4	115	1	0	0	0	0	0	0	0	1	17862	1219	43	4		4	ZNF208	19	22157191	Silent	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09		22157191	36971792	25	7048										
ASXL1	0	genome.wustl.edu	37	chr20	31023224	31023224	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cattggatacccatcccatcGaatgatgaggtagtgaaaca	9	9	0	3			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	20	31023224	31023224	G	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.2709	p.S903	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	168	0	0	59	47	44.34	-	-	-	T	31023224	G	T	31023224	2	4	115	1	0	0	0	0	0	0	0	1	1070	1045	37	3		3	ASXL1	20	31023224	Silent	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09		31023224	32002296	26	7049										
CHD6	0	genome.wustl.edu	37	chr20	40050464	40050464	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	catccaggaaggacagctggGggtcgttcatgatgtaacag	14	8	1	1			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	20	40050464	40050464	G	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.4811	p.P1604R	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	88	0	0	73	53	42.06	-	-	-	C	40050464	G	C	40050464	3	2	115	1	0	0	0	0	1	0	0	0	3358	1232	43	4	3364	4	CHD6	20	40050464	Missense_Mutation	SNP	G	TCGA-A7-A0CD-01A-11W-A019-09	9027240	40050464	22975056	27	7050										
GYG2	0	genome.wustl.edu	37	chrX	2779579	2779580	+	Frame_Shift_Ins	INS	-	-	G													0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	cagctttgccacagtgatgtINSgggggggccgtgtgcggatt							TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	2779579	2779580	-	G	INS	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	frame_shift_ins	c.947_948	p.P319fs	0.000:0.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	27	0	0	19	4	17.39	-	-	-	G	2779580	-	G	2779579	7	5	115	1	0	1	1	0	0	0	0	0	6957	1696	59	0	977	0	GYG2	23	2779579	Frame_Shift_Ins	INS	-	TCGA-A7-A0CD-01A-11W-A019-09		2779579	152490981	28	7051										
PHKA2	0	genome.wustl.edu	37	chrX	18954268	18954268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	ggcctctcggtattcttggaCctggaaaacagccccatcat	9	13	3	0			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	18954268	18954268	C	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1042	p.V348F	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	26	0	0	25	8	24.24	-	-	-	A	18954268	C	A	18954268	3	1	115	1	0	0	0	0	1	0	0	0	11918	521	18	4	2757	4	PHKA2	23	18954268	Missense_Mutation	SNP	C	TCGA-A7-A0CD-01A-11W-A019-09	16174689	18954268	136316292	29	7052										
POLA1	0	genome.wustl.edu	37	chrX	24859809	24859809	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.379934210526316	0	0.434210526315789	1	1	0	agagttcatcattatcataaAgatgaagagaatgatgctct	8	5	4	5			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	24859809	24859809	A	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.3777	p.K1259N	1.000	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	193	0	0	53	70	56.91	-	-	-	T	24859809	A	T	24859809	3	4	115	1	0	0	0	0	1	0	0	0	12261	69	3	5	3889	5	POLA1	23	24859809	Missense_Mutation	SNP	A	TCGA-A7-A0CD-01A-11W-A019-09	5905541	24859809	130410751	30	7053										
NPPA	0	genome.wustl.edu	37	chr1	11907684	11907684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	attagctctggtctgacctaGgagctggaatgccagtaaaa	11	8	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	11907684	11907684	G	C	SNP	NPPA	ENST00000376480	human	ensembl	69_37n	-1	known	missense	c.58	p.L20V	0.123	prints_Natriuretic_peptide_atrial	pfam_Natr_peptide,smart_Natr_peptide,prints_Natriuretic_peptide_atrial,prints_Natr_peptide	-	no_errors	NPPA	HGNC	ENSG00000175206	108	0	0	55	13	19.12	-	-	-	C	11907684	G	C	11907684	3	2	116	1	0	0	0	0	1	0	0	0	10664	991	35	4	409	4	NPPA	1	11907684	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		11907684	237342937	1	7054										
KIF17	0	genome.wustl.edu	37	chr1	20991082	20991082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggcaagcagctgtgctcacaGaggctcactgccaaagttgc	12	12	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	20991082	20991082	G	C	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.3085	p.L1029V	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	73	0	0	32	10	23.26	-	-	-	C	20991082	G	C	20991082	3	2	116	1	0	0	0	0	1	0	0	0	8331	933	33	2	8	2	KIF17	1	20991082	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	9083398	20991082	228259539	2	7055										
LDLRAD2	0	genome.wustl.edu	37	chr1	22140944	22140945	+	Frame_Shift_Ins	INS	-	-	A													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gggggacgggctgctgctgcINSgctcgcacgccgcatcgcgc							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	22140944	22140945	-	A	INS	LDLRAD2	ENST00000344642	human	ensembl	69_37n	1	known	frame_shift_ins	c.139_140	p.R47fs	1.000:1.000	superfamily_CUB	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942	20	0	0	7	3	30	-	-	-	A	22140945	-	A	22140944	7	5	116	1	0	1	1	0	0	0	0	0	8760	768	27	0	145	0	LDLRAD2	1	22140944	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	1149862	22140944	227109677	3	7056										
LDLRAP1	0	genome.wustl.edu	37	chr1	25889626	25889627	+	Frame_Shift_Ins	INS	-	-	C													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gggggcccgccaagactgcaINSccccctccttgaagagctgt							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	25889626	25889627	-	C	INS	LDLRAP1	ENST00000374338	human	ensembl	69_37n	1	known	frame_shift_ins	c.598_599	p.S202fs	0.384:0.477	NULL	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	LDLRAP1	HGNC	ENSG00000157978	44	0	0	44	7	13.73	-	-	-	C	25889627	-	C	25889626	7	5	116	1	0	1	1	0	0	0	0	0	8762	159	6	0	620	0	LDLRAP1	1	25889626	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	3748682	25889626	223360995	4	7057										
IPP	0	genome.wustl.edu	37	chr1	46206690	46206690	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagaatccattgcattgcagCtaagaagacctggtattcat	8	9	1	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	46206690	46206690	C	A	SNP	IPP	ENST00000396478	human	ensembl	69_37n	-1	known	missense	c.607	p.A203S	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IPP	HGNC	ENSG00000197429	210	0	0	89	16	15.24	-	-	-	A	46206690	C	A	46206690	3	1	116	1	0	0	0	0	1	0	0	0	7854	797	28	4	1277	4	IPP	1	46206690	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	20317064	46206690	203043931	5	7058										
CDC7	0	genome.wustl.edu	37	chr1	91989621	91989621	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aatcaatattatgtagcaaaGaagttccagcacaagacttg	7	7	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	91989621	91989621	G	C	SNP	CDC7	ENST00000234626	human	ensembl	69_37n	1	known	missense	c.1354	p.E452Q	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC7	HGNC	ENSG00000097046	274	0	0	366	109	22.95	-	-	-	C	91989621	G	C	91989621	3	2	116	1	0	0	0	0	1	0	0	0	3113	943	33	2	1396	2	CDC7	1	91989621	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	45782931	91989621	157261000	6	7059										
TRIM46	0	genome.wustl.edu	37	chr1	155152365	155152365	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gctgcaacaaggccggctacGgcgaatacagtgaagatgtg	14	9	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	155152365	155152365	G	T	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1543	p.G515C	1.000	superfamily_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	17	0	0	7	8	53.33	-	-	-	T	155152365	G	T	155152365	3	4	116	1	0	0	0	0	1	0	0	0	16617	1116	39	3	1573	3	TRIM46	1	155152365	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	63162744	155152365	94098256	7	7060										
OR6K6	0	genome.wustl.edu	37	chr1	158724637	158724637	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttcagtgggtaatcaacattCcaattataggagtctcttgt	8	7	3	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	158724637	158724637	C	G	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	missense	c.32	p.S11C	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	389	0	0	409	187	31.38	-	-	-	G	158724637	C	G	158724637	3	3	116	1	0	0	0	0	1	0	0	0	11277	855	30	2	34	2	OR6K6	1	158724637	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	3572272	158724637	90525984	8	7061										
FMO2	0	genome.wustl.edu	37	chr1	171174757	171174757	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gaacttcaagctcgttgggtGacaagagttttcaaaggtaa	11	6	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	171174757	171174757	G	C	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	silent	c.1167	p.V389	0.065	pfam_Flavin_mOase-like,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	123	0	0	153	32	17.3	-	-	-	C	171174757	G	C	171174757	2	2	116	1	0	0	0	0	0	0	0	1	6001	1277	45	2		2	FMO2	1	171174757	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	12450120	171174757	78075864	9	7062										
KDM5B	0	genome.wustl.edu	37	chr1	202722080	202722080	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggggttcatgatggtcacaaGctgatggaggagatccggct	16	7	2	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	202722080	202722080	G	C	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.1654	p.L552V	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	127	0	0	114	60	34.29	-	-	-	C	202722080	G	C	202722080	3	2	116	1	0	0	0	0	1	0	0	0	8187	971	34	4	3044	4	KDM5B	1	202722080	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	31547323	202722080	46528541	10	7063										
CDC42BPA	0	genome.wustl.edu	37	chr1	227198691	227198691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagaattaacagtcatgtgaTagatgtgttcaaagttgatc	9	5	2	4			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	227198691	227198691	T	C	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.4826	p.Y1609C	1.000	smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	79	0	0	50	22	30.56	-	-	-	C	227198691	T	C	227198691	3	2	116	1	0	0	0	0	1	0	0	0	3101	1421	49	5		5	CDC42BPA	1	227198691	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	24476611	227198691	22051930	11	7064										
OR2T3	0	genome.wustl.edu	37	chr1	248637179	248637179	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agcttccccttttgccagtcTaggaaaatcctgagtttttt	7	10	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	248637179	248637179	T	A	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	silent	c.528	p.S176	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	338	0	0	343	268	43.72	-	-	-	A	248637179	T	A	248637179	2	1	116	1	0	0	0	0	0	0	0	1	11096	1509	53	5		5	OR2T3	1	248637179	Silent	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	21438488	248637179	613442	12	7065										
OR2G6	0	genome.wustl.edu	37	chr1	248685865	248685865	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gccttgaggaccctgatactGggtagtgctgctggacaaag	14	9	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	1	248685865	248685865	G	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	silent	c.918	p.L306	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	175	0	0	255	149	36.88	-	-	-	T	248685865	G	T	248685865	2	4	116	1	0	0	0	0	0	0	0	1	11073	1335	47	4		4	OR2G6	1	248685865	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	48686	248685865	564756	13	7066										
LHCGR	0	genome.wustl.edu	37	chr2	48958413	48958413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aaagcttgagatgggatcacTttgacagggaggtaggcaag	15	5	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	2	48958413	48958413	T	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.186	p.K62N	1.000	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	163	0	0	196	52	20.97	-	-	-	G	48958413	T	G	48958413	3	3	116	1	0	0	0	0	1	0	0	0	8817	1606	56	5	1953	5	LHCGR	2	48958413	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		48958413	194240960	14	7067										
DYSF	0	genome.wustl.edu	37	chr2	71743347	71743347	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gtttgactctcctggggagcTgtttgatgagcccatcttta	11	9	2	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	2	71743347	71743347	T	G	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.923	p.L308R	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	52	0	0	54	16	22.86	-	-	-	G	71743347	T	G	71743347	3	3	116	1	0	0	0	0	1	0	0	0	4894	1580	55	5	1052	5	DYSF	2	71743347	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	22784934	71743347	171456026	15	7068										
VWA3B	0	genome.wustl.edu	37	chr2	98928506	98928507	+	Frame_Shift_Ins	INS	-	-	G													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gagcccagggtttgggtgatINSggggggggaacacaacatcg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	4c81cd23-413c-45a2-bd6e-73212e75ab8c	2	98928506	98928507	-	G	INS	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1977_1978	p.T662fs	0.000:0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	18	0	0	21	3	12.5	-	-	-	G	98928507	-	G	98928506	7	5	116	1	0	1	1	0	0	0	0	0	17338	1479	51	0		0	VWA3B	2	98928506	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	27185159	98928506	144270867	16	7069										
MGAT4A	0	genome.wustl.edu	37	chr2	99279578	99279578	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aggttatcaataagggaatgAagagtttctatgaggtaaga	12	2	2	4			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	2	99279578	99279578	A	C	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	silent	c.468	p.L156	0.999	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	410	0	0	348	169	32.69	-	-	-	C	99279578	A	C	99279578	2	2	116	1	0	0	0	0	0	0	0	1	9616	233	9	5		5	MGAT4A	2	99279578	Silent	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	351072	99279578	143919795	17	7070										
TTN	0	genome.wustl.edu	37	chr2	179641483	179641483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgagttttttcttgaaaaatGgtttctgttgtttctctttg	8	4	3	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	2	179641483	179641483	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.5108	p.P1703L	1.000	superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	167	0	0	82	37	31.09	-	-	-	A	179641483	G	A	179641483	3	1	116	1	0	0	0	0	1	0	0	0	16832	1348	47	4	106220	4	TTN	2	179641483	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	80361905	179641483	63557890	18	7071										
FAM117B	0	genome.wustl.edu	37	chr2	203591010	203591010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gcagttgcagagaagtaaacAcagcagtcggcatcatcgag	12	9	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	2	203591010	203591010	A	G	SNP	FAM117B	ENST00000392238	human	ensembl	69_37n	1	known	missense	c.884	p.H295R	1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	480	0	0	105	41	28.08	-	-	-	G	203591010	A	G	203591010	3	3	116	1	0	0	0	0	1	0	0	0	5450	159	6	5	898	5	FAM117B	2	203591010	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	23949527	203591010	39608363	19	7072										
IMPDH2	0	genome.wustl.edu	37	chr3	49062341	49062341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgtcccacctgaaatatctgTtctggctgctgaggtgcttg	11	10	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	49062341	49062341	T	C	SNP	IMPDH2	ENST00000326739	human	ensembl	69_37n	-1	known	missense	c.1283	p.N428S	0.998	pfam_IMP_DH_GMPRt,pirsf_IMP_DH-rel,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_2Npropane_dOase,pfam_FMN-dep_DH,pfam_NanE,smart_Cysta_beta_synth_core,pirsf_IMP_DH-rel,tigrfam_IMP_DH	-	no_errors	IMPDH2	HGNC	ENSG00000178035	72	0	0	20	15	42.86	-	-	-	C	49062341	T	C	49062341	3	2	116	1	0	0	0	0	1	0	0	0	7781	1725	60	5	277	5	IMPDH2	3	49062341	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		49062341	148960089	20	7073										
DUSP7	0	genome.wustl.edu	37	chr3	52088078	52088078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cgttgggtaggttgggtgtgAcattgaggatatacttgatg	16	3	0	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	52088078	52088078	A	C	SNP	DUSP7	ENST00000296483	human	ensembl	69_37n	-1	known	missense	c.677	p.V226G	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP7	HGNC	ENSG00000164086	50	0	0	12	4	25	-	-	-	C	52088078	A	C	52088078	3	2	116	1	0	0	0	0	1	0	0	0	4865	275	10	5	437	5	DUSP7	3	52088078	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	3025737	52088078	145934352	21	7074										
MYH15	0	genome.wustl.edu	37	chr3	108158716	108158716	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gctgctctgttaagtttgctGatatcctcatttagaaactc	7	9	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	108158716	108158716	G	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	silent	c.3003	p.I1001	0.004	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	509	0	0	106	153	59.07	-	-	-	T	108158716	G	T	108158716	2	4	116	1	0	0	0	0	0	0	0	1	10106	1280	45	2		2	MYH15	3	108158716	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	56070638	108158716	89863714	22	7075										
HCLS1	0	genome.wustl.edu	37	chr3	121361820	121361820	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tctcctttataatcaaagccGactgctgactacagagaaga	7	10	2	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	121361820	121361820	G	A	SNP	HCLS1	ENST00000314583	human	ensembl	69_37n	-1	known	silent	c.408	p.V136	0.999	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	168	0	0	180	56	23.73	-	-	-	A	121361820	G	A	121361820	2	1	116	1	0	0	0	0	0	0	0	1	7046	1045	37	1		1	HCLS1	3	121361820	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	13203104	121361820	76660610	23	7076										
BCHE	0	genome.wustl.edu	37	chr3	165491226	165491226	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atcgttaaattgatttttccAgtccatcatgtaattgttcc	5	8	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	165491226	165491226	A	T	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	missense	c.1753	p.W585R	1.000	pfam_AChE_tetra	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	80	0	0	133	24	15.29	-	-	-	T	165491226	A	T	165491226	3	4	116	1	0	0	0	0	1	0	0	0	1362	188	7	5	59	5	BCHE	3	165491226	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	44129406	165491226	32531204	24	7077										
NCEH1	0	genome.wustl.edu	37	chr3	172428805	172428805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctcggctcgccagcgggctgGcaaagaggaaagggcgatac	16	11	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	172428805	172428805	G	C	SNP	NCEH1	ENST00000538775	human	ensembl	69_37n	-1	known	missense	c.66	p.C22W	0.000	NULL	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	NCEH1	HGNC	ENSG00000144959	55	0	0	24	8	25	-	-	-	C	172428805	G	C	172428805	3	2	116	1	0	0	0	0	1	0	0	0	10287	1195	42	4	1300	4	NCEH1	3	172428805	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	6937579	172428805	25593625	25	7078										
SPATA16	0	genome.wustl.edu	37	chr3	172835390	172835390	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagtttttcttaatctcttgTgacatttccaggatgttagg	8	7	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	172835390	172835390	T	A	SNP	SPATA16	ENST00000351008	human	ensembl	69_37n	-1	known	silent	c.132	p.S44	0.000	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962	470	0	0	678	203	22.94	-	-	-	A	172835390	T	A	172835390	2	1	116	1	0	0	0	0	0	0	0	1	15092	1683	59	5		5	SPATA16	3	172835390	Silent	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	406585	172835390	25187040	26	7079										
FXR1	0	genome.wustl.edu	37	chr3	180685864	180685864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aattctgagctgtctaacccCtctgaaacggaatctgagcg	9	11	4	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	180685864	180685864	C	T	SNP	FXR1	ENST00000482125	human	ensembl	69_37n	1	novel	missense	c.26	p.P9L	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FXR1	HGNC	ENSG00000114416	193	0	0	157	51	24.52	-	-	-	T	180685864	C	T	180685864	3	4	116	1	0	0	0	0	1	0	0	0	6164	668	24	4	1278	4	FXR1	3	180685864	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	7850474	180685864	17336566	27	7080										
HTR3E	0	genome.wustl.edu	37	chr3	183823579	183823579	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atcaggcgcaggcccagtctCtatgtcataaaccttctcgt	8	13	4	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	3	183823579	183823579	C	A	SNP	HTR3E	ENST00000335304	human	ensembl	69_37n	1	known	silent	c.792	p.L264	0.903	superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038	246	0	0	213	68	24.2	-	-	-	A	183823579	C	A	183823579	2	1	116	1	0	0	0	0	0	0	0	1	7502	900	32	2		2	HTR3E	3	183823579	Silent	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	3137715	183823579	14198851	28	7081										
PIGG	0	genome.wustl.edu	37	chr4	502620	502620	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttttcctttgccttaaaggaGagagagacgcctttacccaa	8	10	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	4	502620	502620	G	C	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.762	p.E254D	0.933	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	342	0	0	132	54	29.03	-	-	-	C	502620	G	C	502620	3	2	116	1	0	0	0	0	1	0	0	0	11962	933	33	2	780	2	PIGG	4	502620	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		502620	190651656	29	7082										
LDB2	0	genome.wustl.edu	37	chr4	16587601	16587601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cctggtgatgtttttggacaGctgatccaggacctgaggat	13	8	0	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	4	16587601	16587601	G	T	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.559	p.L187M	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	220	0	0	124	46	27.06	-	-	-	T	16587601	G	T	16587601	3	4	116	1	0	0	0	0	1	0	0	0	8750	962	34	4	687	4	LDB2	4	16587601	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	16084981	16587601	174566675	30	7083										
RASL11B	0	genome.wustl.edu	37	chr4	53731706	53731706	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctgacctgttgcacatcaaaCaggttgaccctcagcttgga	9	12	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	4	53731706	53731706	C	G	SNP	RASL11B	ENST00000248706	human	ensembl	69_37n	1	known	missense	c.481	p.Q161E	1.000	pfam_Small_GTPase,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11B	HGNC	ENSG00000128045	137	0	0	47	38	44.71	-	-	-	G	53731706	C	G	53731706	3	3	116	1	0	0	0	0	1	0	0	0	13165	479	17	4	495	4	RASL11B	4	53731706	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	37144105	53731706	137422570	31	7084										
SYNPO2	0	genome.wustl.edu	37	chr4	119948056	119948056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctgactcccaaagaggacgcGtggcagaagagctgatctta	12	10	1	5			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	4	119948056	119948056	G	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.532	p.V178M	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	97	0	0	99	35	26.12	-	-	-	A	119948056	G	A	119948056	3	1	116	1	0	0	0	0	1	0	0	0	15549	1145	40	1	542	1	SYNPO2	4	119948056	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	66216350	119948056	71206220	32	7085										
NIPBL	0	genome.wustl.edu	37	chr5	37008133	37008134	+	Frame_Shift_Ins	INS	-	-	T													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	catctatgggaataacaccaINSttttttgtggaaaatgtcag							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	5	37008133	37008134	-	T	INS	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	frame_shift_ins	c.4263_4264	p.V1423fs	0.998:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	51	0	0	20	18	47.37	-	-	-	T	37008134	-	T	37008133	7	5	116	1	0	1	1	0	0	0	0	0	10500	204	8	0	4333	0	NIPBL	5	37008133	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09		37008133	143907127	33	7086										
FYB	0	genome.wustl.edu	37	chr5	39135064	39135064	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tcagttcattctttcctcctTtgacatcacaacaagctttt	3	12	4	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	5	39135064	39135064	T	A	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	missense	c.1598	p.K533I	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	301	0	0	385	130	25.24	-	-	-	A	39135064	T	A	39135064	3	1	116	1	0	0	0	0	1	0	0	0	6173	1841	64	5	969	5	FYB	5	39135064	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	2126931	39135064	141780196	34	7087										
VCAN	0	genome.wustl.edu	37	chr5	82843850	82843850	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cacttgtgttgatggttttaAcacattcaggtgcctctgcc	9	10	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	5	82843850	82843850	A	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.9440	p.N3147T	0.991	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	150	0	0	109	32	22.7	-	-	-	C	82843850	A	C	82843850	3	2	116	1	0	0	0	0	1	0	0	0	17235	43	2	5	9474	5	VCAN	5	82843850	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	43708786	82843850	98071410	35	7088										
PCDHB2	0	genome.wustl.edu	37	chr5	140476160	140476160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ccaaggtggtggcggtggacGgcgactcgggccagaacgcc	18	12	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	5	140476160	140476160	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.1786	p.G596S	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	68	0	0	11	2	15.38	-	-	-	A	140476160	G	A	140476160	3	1	116	1	0	0	0	0	1	0	0	0	11615	1116	39	1	1788	1	PCDHB2	5	140476160	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	57632310	140476160	40439100	36	7089										
TRERF1	0	genome.wustl.edu	37	chr6	42224823	42224823	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggatttctgcttggaatctcAagccaatgttgatgcgtctt	10	8	3	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	6	42224823	42224823	A	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	nonsense	c.2414	p.L805*	0.997	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	184	0	0	53	69	56.56	-	-	-	T	42224823	A	T	42224823	4	4	116	1	0	0	0	0	0	1	0	0	16571	131	5	5	1280	5	TRERF1	6	42224823	Nonsense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09		42224823	128890244	37	7090										
CDC5L	0	genome.wustl.edu	37	chr6	44360503	44360503	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttgatgccaactcagtggagGaccattgctccaatcattgg	10	10	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	6	44360503	44360503	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	silent	c.249	p.R83	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	176	0	0	76	82	51.9	-	-	-	A	44360503	G	A	44360503	2	1	116	1	0	0	0	0	0	0	0	1	3111	1165	41	2		2	CDC5L	6	44360503	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	2135680	44360503	126754564	38	7091										
MYCT1	0	genome.wustl.edu	37	chr6	153043116	153043116	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tggccagtctcaccttccagCgacaagcttccctggaacaa	8	15	1	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	6	153043116	153043116	C	T	SNP	MYCT1	ENST00000367245	human	ensembl	69_37n	1	known	nonsense	c.436	p.R146*	0.999	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	506	0	0	291	79	21.35	-	-	-	T	153043116	C	T	153043116	4	4	116	1	0	0	0	0	0	1	0	0	10094	760	27	1	442	1	MYCT1	6	153043116	Nonsense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	108682613	153043116	18071951	39	7092										
COL28A1	0	genome.wustl.edu	37	chr7	7571011	7571011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aattttatctacaagggttgGatcactcaacagtaaagtgg	9	6	3	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	7571011	7571011	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	missense	c.649	p.P217S	0.048	smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	217	0	0	275	58	17.42	-	-	-	A	7571011	G	A	7571011	3	1	116	1	0	0	0	0	1	0	0	0	3716	1174	41	2	2860	2	COL28A1	7	7571011	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		7571011	151567652	40	7093										
ANLN	0	genome.wustl.edu	37	chr7	36438976	36438976	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aaaacttgcagagcaacggcGccgttgggataatgatgata	12	7	0	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	36438976	36438976	G	C	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	missense	c.461	p.R154P	0.990	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	275	0	0	106	28	20.9	-	-	-	C	36438976	G	C	36438976	3	2	116	1	0	0	0	0	1	0	0	0	693	1087	38	3	471	3	ANLN	7	36438976	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	28867965	36438976	122699687	41	7094										
HECW1	0	genome.wustl.edu	37	chr7	43546850	43546850	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atttggtcagggtccggggaAaattaagtgagtgctccagt	14	6	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	43546850	43546850	A	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.3746	p.K1249I	1.000	superfamily_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	198	0	0	146	51	25.89	-	-	-	T	43546850	A	T	43546850	3	4	116	1	0	0	0	0	1	0	0	0	7093	14	1	5	3824	5	HECW1	7	43546850	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	7107874	43546850	115591813	42	7095										
CDK14	0	genome.wustl.edu	37	chr7	90741993	90741993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cacggctatgggaactcaccGacagtgagtatgacaaatcc	10	11	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	90741993	90741993	G	A	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	missense	c.1291	p.D431N	0.998	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	210	1	0.47	337	51	13.14	-	-	-	A	90741993	G	A	90741993	3	1	116	1	0	0	0	0	1	0	0	0	3159	1058	37	1	1283	1	CDK14	7	90741993	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	47195143	90741993	68396670	43	7096										
AGFG2	0	genome.wustl.edu	37	chr7	100159886	100159886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttccacaactgcccagggagCagccaggggactccatttgg	12	13	0	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	100159886	100159886	C	T	SNP	AGFG2	ENST00000429987	human	ensembl	69_37n	1	putative	missense	c.107	p.A36V	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AGFG2	HGNC	ENSG00000106351	78	0	0	59	15	20.27	-	-	-	T	100159886	C	T	100159886	3	4	116	1	0	0	0	0	1	0	0	0	381	709	25	4	908	4	AGFG2	7	100159886	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	9417893	100159886	58978777	44	7097										
ZAN	0	genome.wustl.edu	37	chr7	100377343	100377343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ccagagccaggggctcaagcCcccactctggagaaacagca	11	15	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	100377343	100377343	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.6590	p.P2197L	0.010	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	11	0	0	7	5	41.67	-	-	-	T	100377343	C	T	100377343	3	4	116	1	0	0	0	0	1	0	0	0	17610	623	22	4	6726	4	ZAN	7	100377343	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	217457	100377343	58761320	45	7098										
SRRT	0	genome.wustl.edu	37	chr7	100479395	100479395	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gccaccctgacgtccacatcAtgcagcaccatgtcctgcct	7	18	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	4c81cd23-413c-45a2-bd6e-73212e75ab8c	7	100479395	100479395	A	T	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.367	p.M123L	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	24	0	0	46	32	41.03	-	-	-	T	100479395	A	T	100479395	3	4	116	1	0	0	0	0	1	0	0	0	15263	217	8	5	377	5	SRRT	7	100479395	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	102052	100479395	58659268	46	7099										
SLC26A3	0	genome.wustl.edu	37	chr7	107427288	107427288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttacccaggattcatgtcccCaaccacagccactttaaacc	4	16	1	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	107427288	107427288	C	A	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	missense	c.955	p.G319W	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	153	1	0.65	140	86	38.05	-	-	-	A	107427288	C	A	107427288	3	1	116	1	0	0	0	0	1	0	0	0	14607	594	21	4	1395	4	SLC26A3	7	107427288	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	6947893	107427288	51711375	47	7100										
PTPRZ1	0	genome.wustl.edu	37	chr7	121695092	121695092	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgaagaacacaaatgtctatCtaatgaggaaaaacttataa	6	5	2	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	121695092	121695092	C	G	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.6479	p.S2160C	0.998	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	204	0	0	353	77	17.91	-	-	-	G	121695092	C	G	121695092	3	3	116	1	0	0	0	0	1	0	0	0	12897	913	32	2	6585	2	PTPRZ1	7	121695092	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	14267804	121695092	37443571	48	7101										
KLF14	0	genome.wustl.edu	37	chr7	130418081	130418082	+	Frame_Shift_Ins	INS	-	-	C													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tccgggagaactgcttggggINScagagggggcaggagaagcg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	130418081	130418082	-	C	INS	KLF14	ENST00000310992	human	ensembl	69_37n	-1	known	frame_shift_ins	c.780_779	p.C260fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF14	HGNC	ENSG00000174595	33	0	0	5	3	37.5	-	-	-	C	130418082	-	C	130418081	7	5	116	1	0	1	1	0	0	0	0	0	8395	1195	42	0	195	0	KLF14	7	130418081	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	8722989	130418081	28720582	49	7102										
PRKAG2	0	genome.wustl.edu	37	chr7	151265913	151265913	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttatttttgatcaaggagtaTacagcatcgaagaggctgtg	11	5	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	7	151265913	151265913	T	C	SNP	PRKAG2	ENST00000287878	human	ensembl	69_37n	-1	known	silent	c.1122	p.V374	0.995	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG2	HGNC	ENSG00000106617	130	0	0	143	28	16.37	-	-	-	C	151265913	T	C	151265913	2	2	116	1	0	0	0	0	0	0	0	1	12582	1393	49	5		5	PRKAG2	7	151265913	Silent	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	20847832	151265913	7872750	50	7103										
ANK1	0	genome.wustl.edu	37	chr8	41615631	41615631	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gttacctgatcttgctgctcTcagaaagctggtagcagcat	10	10	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	8	41615631	41615631	T	A	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	nonsense	c.52	p.R18*	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	1132	2	0.18	366	92	20.04	-	-	-	A	41615631	T	A	41615631	4	1	116	1	0	0	0	0	0	1	0	0	620	1559	54	5	6111	5	ANK1	8	41615631	Nonsense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		41615631	104748391	51	7104										
ATP6V1C1	0	genome.wustl.edu	37	chr8	104078638	104078638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agaagtattacatgaattgtAtaaacatctagacagcagtg	8	5	1	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	8	104078638	104078638	A	G	SNP	ATP6V1C1	ENST00000395862	human	ensembl	69_37n	1	known	missense	c.1016	p.Y339C	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097	126	0	0	83	64	43.54	-	-	-	G	104078638	A	G	104078638	3	3	116	1	0	0	0	0	1	0	0	0	1184	449	16	5	1058	5	ATP6V1C1	8	104078638	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	62463007	104078638	42285384	52	7105										
NOL6	0	genome.wustl.edu	37	chr9	33464968	33464968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aatcgaaggaagccaacctgGggggaactaaagggctggag	16	7	0	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	9	33464968	33464968	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	silent	c.2688	p.P896	0.921	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	58	0	0	48	17	26.15	-	-	-	A	33464968	G	A	33464968	2	1	116	1	0	0	0	0	0	0	0	1	10597	1219	43	4		4	NOL6	9	33464968	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		33464968	107748463	53	7106										
CRB2	0	genome.wustl.edu	37	chr9	126132756	126132757	+	Frame_Shift_Ins	INS	-	-	T													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctgcccgctgggaccttggcINScactcgcaatgacaccaagg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	9	126132756	126132757	-	T	INS	CRB2	ENST00000373631	human	ensembl	69_37n	1	known	frame_shift_ins	c.1424_1425	p.T476fs	0.997:0.945	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204	21	0	0	4	2	33.33	-	-	-	T	126132757	-	T	126132756	7	5	116	1	0	1	1	0	0	0	0	0	3879	739	26	0	1450	0	CRB2	9	126132756	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	92667788	126132756	15080675	54	7107										
PTGDS	0	genome.wustl.edu	37	chr9	139875223	139875224	+	Frame_Shift_Del	DEL	CA	CA	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tacgggaggaacaggaagccCagtgggaaaattggcctaag							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	9	139875223	139875224	CA	-	DEL	PTGDS	ENST00000444903	human	ensembl	69_37n	1	known	frame_shift_del	c.122_123	p.P41fs	0.000:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTGDS	HGNC	ENSG00000107317	23	0	0	7	4	36.36	-	-	-	-	139875224	CA	-	139875223	7	5	116	1	0	1	0	1	0	0	0	0	12822	609	21	0		0	PTGDS	9	139875223	Frame_Shift_Del	DEL	CA	TCGA-A7-A0CE-01A-11W-A019-09	13742467	139875223	1338208	55	7108										
PFKP	0	genome.wustl.edu	37	chr10	3172105	3172106	+	Frame_Shift_Ins	INS	-	-	G													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgtggctacctggccaacatINSgggggggctcgcggccggag							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	10	3172105	3172106	-	G	INS	PFKP	ENST00000381125	human	ensembl	69_37n	1	known	frame_shift_ins	c.1778_1779	p.L596fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	23	0	0	18	3	14.29	-	-	-	G	3172106	-	G	3172105	7	5	116	1	0	1	1	0	0	0	0	0	11840	1464	51	0	1844	0	PFKP	10	3172105	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09		3172105	132362642	56	7109										
FAM171A1	0	genome.wustl.edu	37	chr10	15255345	15255345	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cttccgggctgattttggttCattcatatctacgccagagt	9	10	3	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	10	15255345	15255345	C	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	nonsense	c.2242	p.E748*	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	169	0	0	59	13	18.06	-	-	-	A	15255345	C	A	15255345	4	1	116	1	0	0	0	0	0	1	0	0	5530	835	29	2	434	2	FAM171A1	10	15255345	Nonsense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	12083240	15255345	120279402	57	7110										
LZTS2	0	genome.wustl.edu	37	chr10	102763592	102763592	+	Frame_Shift_Del	DEL	A	A	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	caccagctccccaggcgggcAcctgccttcccatggctctg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	10	102763592	102763592	A	-	DEL	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	frame_shift_del	c.737	p.H246fs	0.986	NULL	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	90	0	0	6	17	70.83	-	-	-	-	102763592	A	-	102763592	7	5	116	1	0	1	0	1	0	0	0	0	9206	159	6	0	743	0	LZTS2	10	102763592	Frame_Shift_Del	DEL	A	TCGA-A7-A0CE-01A-11W-A019-09	87508247	102763592	32771155	58	7111										
OR5T1	0	genome.wustl.edu	37	chr11	56043581	56043581	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acccagagtctatgtgccacTcatcactgcttcctatgttg	7	13	3	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	56043581	56043581	T	A	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.467	p.L156H	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	1330	0	0	356	183	33.89	-	-	-	A	56043581	T	A	56043581	3	1	116	1	0	0	0	0	1	0	0	0	11254	1551	54	5	469	5	OR5T1	11	56043581	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		56043581	78962935	59	7112										
SMTNL1	0	genome.wustl.edu	37	chr11	57314020	57314020	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagctggagcagtggtatggCcttctgtgccctcatccaca	11	13	2	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	57314020	57314020	C	A	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	missense	c.1289	p.A430D	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	37	0	0	17	13	41.94	-	-	-	A	57314020	C	A	57314020	3	1	116	1	0	0	0	0	1	0	0	0	14904	739	26	4	1315	4	SMTNL1	11	57314020	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	1270439	57314020	77692496	60	7113										
ZFPL1	0	genome.wustl.edu	37	chr11	64853916	64853916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	actgggcctgcctcaatgaaCgtgctgcccagctaccccga	10	16	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	64853916	64853916	C	T	SNP	ZFPL1	ENST00000294258	human	ensembl	69_37n	1	known	missense	c.244	p.R82C	1.000	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300	405	0	0	93	53	36.3	-	-	-	T	64853916	C	T	64853916	3	4	116	1	0	0	0	0	1	0	0	0	17752	536	19	1	254	1	ZFPL1	11	64853916	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	7539896	64853916	70152600	61	7114										
IGHMBP2	0	genome.wustl.edu	37	chr11	68678969	68678969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aaagaagcggttttatttgcGctgtctcagaaagaacttgc	10	7	1	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	4c81cd23-413c-45a2-bd6e-73212e75ab8c	11	68678969	68678969	G	A	SNP	IGHMBP2	ENST00000539224	human	ensembl	69_37n	1	novel	missense	c.511	p.A171T	0.012	NULL	NULL	-	no_errors	IGHMBP2	HGNC	ENSG00000132740	29	0	0	25	13	34.21	-	-	-	A	68678969	G	A	68678969	3	1	116	1	0	0	0	0	1	0	0	0	7645	1074	38	1	627	1	IGHMBP2	11	68678969	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	3825053	68678969	66327547	62	7115										
IGHMBP2	0	genome.wustl.edu	37	chr11	68704370	68704370	+	Frame_Shift_Del	DEL	G	G	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gcccagcccctctccagccaGtgccccctacccctgcgcag							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	68704370	68704370	G	-	DEL	IGHMBP2	ENST00000255078	human	ensembl	69_37n	1	known	frame_shift_del	c.2422	p.V808fs	0.000	NULL	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740	16	0	0	7	5	41.67	-	-	-	-	68704370	G	-	68704370	7	5	116	1	0	1	0	1	0	0	0	0	7645	1029	36	0	2472	0	IGHMBP2	11	68704370	Frame_Shift_Del	DEL	G	TCGA-A7-A0CE-01A-11W-A019-09	25401	68704370	66302146	63	7116										
STARD10	0	genome.wustl.edu	37	chr11	72470286	72470287	+	Frame_Shift_Ins	INS	-	-	C													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acgcctgctcacaggagtaaINStagcccacgtcagcgttgac							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	72470286	72470287	-	C	INS	STARD10	ENST00000334805	human	ensembl	69_37n	-1	known	frame_shift_ins	c.348_347	p.Y116fs	1.000:1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD10	HGNC	ENSG00000214530	160	0	0	18	5	21.74	-	-	-	C	72470287	-	C	72470286	7	5	116	1	0	1	1	0	0	0	0	0	15346	108	4	0	547	0	STARD10	11	72470286	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	3765916	72470286	62536230	64	7117										
MYO7A	0	genome.wustl.edu	37	chr11	76903246	76903246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cgccctggcacagcccctccGaggacaacgtggccaccaac	10	19	0	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	76903246	76903246	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.4075	p.E1359K	0.997	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	95	0	0	41	7	14.58	-	-	-	A	76903246	G	A	76903246	3	1	116	1	0	0	0	0	1	0	0	0	10154	1059	37	1	4227	1	MYO7A	11	76903246	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	4432960	76903246	58103270	65	7118										
NARS2	0	genome.wustl.edu	37	chr11	78189715	78189715	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atcattgttgtagccttgaaCagttcctctataacctaaga	6	9	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	78189715	78189715	C	G	SNP	NARS2	ENST00000281038	human	ensembl	69_37n	-1	known	silent	c.837	p.L279	0.917	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS2	HGNC	ENSG00000137513	171	0	0	154	40	20.62	-	-	-	G	78189715	C	G	78189715	2	3	116	1	0	0	0	0	0	0	0	1	10243	465	17	4		4	NARS2	11	78189715	Silent	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	1286469	78189715	56816801	66	7119										
PHLDB1	0	genome.wustl.edu	37	chr11	118498674	118498674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tcagtcaacccaccagcattCctggcagccccaagtttcag	7	16	3	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	118498674	118498674	C	T	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.1135	p.P379S	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	306	0	0	17	46	73.02	-	-	-	T	118498674	C	T	118498674	3	4	116	1	0	0	0	0	1	0	0	0	11925	855	30	2	1153	2	PHLDB1	11	118498674	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	40308959	118498674	16507842	67	7120										
TREH	0	genome.wustl.edu	37	chr11	118533617	118533617	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cccagcttcttccagagctgAtgcagctgccctgcccaggc	10	17	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	11	118533617	118533617	A	T	SNP	TREH	ENST00000264029	human	ensembl	69_37n	-1	known	missense	c.396	p.H132Q	0.943	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like,prints_Glyco_hydro_37	-	no_errors	TREH	HGNC	ENSG00000118094	26	0	0	6	14	70	-	-	-	T	118533617	A	T	118533617	3	4	116	1	0	0	0	0	1	0	0	0	16565	330	12	5	1402	5	TREH	11	118533617	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	34943	118533617	16472899	68	7121										
PIK3C2G	0	genome.wustl.edu	37	chr12	18644449	18644449	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agatgtaaatacttgtcatcTtcctctgaaccctgccctat	5	12	3	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	12	18644449	18644449	T	A	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	missense	c.2750	p.L917H	0.998	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	339	1	0.29	249	65	20.63	-	-	-	A	18644449	T	A	18644449	3	1	116	1	0	0	0	0	1	0	0	0	11985	1609	56	5	2697	5	PIK3C2G	12	18644449	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		18644449	115207446	69	7122										
DRAM1	0	genome.wustl.edu	37	chr12	102302031	102302031	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgtctgtggtgtcgtgtacaCgctcctacagtccatcatct	9	12	3	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	12	102302031	102302031	C	G	SNP	DRAM1	ENST00000258534	human	ensembl	69_37n	1	known	missense	c.410	p.T137R	0.972	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048	226	0	0	138	52	27.37	-	-	-	G	102302031	C	G	102302031	3	3	116	1	0	0	0	0	1	0	0	0	4788	536	19	3	424	3	DRAM1	12	102302031	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	83657582	102302031	31549864	70	7123										
CORO1C	0	genome.wustl.edu	37	chr12	109051186	109051186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgggtcttgctccttcatgtGctttctccttctcctggaga	9	12	4	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	12	109051186	109051186	G	A	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	missense	c.803	p.A268V	1.000	superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	80	0	0	13	8	38.1	-	-	-	A	109051186	G	A	109051186	3	1	116	1	0	0	0	0	1	0	0	0	3785	1319	46	4	804	4	CORO1C	12	109051186	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	6749155	109051186	24800709	71	7124										
HNF1A	0	genome.wustl.edu	37	chr12	121432116	121432117	+	Frame_Shift_Ins	INS	-	-	C													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gccatggacacgtacagcggINSgccccccccagggccaggcc							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	12	121432116	121432117	-	C	INS	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	frame_shift_ins	c.863_864	p.P289fs	0.997:0.998	pfam_HNF1b_C,superfamily_Homeodomain-like	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	18	0	0	9	4	30.77	-	-	-	C	121432117	-	C	121432116	7	5	116	1	0	1	1	0	0	0	0	0	7302	1232	43	0	877	0	HNF1A	12	121432116	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	12380930	121432116	12419779	72	7125										
GRK1	0	genome.wustl.edu	37	chr13	114325966	114325966	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cgagaacgtgctgctggacaAtgacggtaggaggtgccctc	15	10	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	13	114325966	114325966	A	C	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	missense	c.980	p.N327T	0.989	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	50	0	0	30	6	16.67	-	-	-	C	114325966	A	C	114325966	3	2	116	1	0	0	0	0	1	0	0	0	6841	101	4	5	990	5	GRK1	13	114325966	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09		114325966	843912	73	7126										
ISM2	0	genome.wustl.edu	37	chr14	77950743	77950743	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagctccagcagcaagggagTaacctcctgggtcctgggag	14	12	0	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	14	77950743	77950743	T	A	SNP	ISM2	ENST00000342219	human	ensembl	69_37n	-1	known	missense	c.550	p.T184S	0.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593	192	0	0	41	42	50.6	-	-	-	A	77950743	T	A	77950743	3	1	116	1	0	0	0	0	1	0	0	0	7915	1638	57	5	1185	5	ISM2	14	77950743	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		77950743	29398797	74	7127										
HERC1	0	genome.wustl.edu	37	chr15	63901449	63901449	+	Frame_Shift_Del	DEL	G	G	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agaagcaggtctgtgaggtaGgcagactgtcgtaaggctgt							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	15	63901449	63901449	G	-	DEL	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	frame_shift_del	c.14417	p.P4806fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	26	0	0	13	3	18.75	-	-	-	-	63901449	G	-	63901449	7	5	116	1	0	1	0	1	0	0	0	0	7108	1000	35	0	172	0	HERC1	15	63901449	Frame_Shift_Del	DEL	G	TCGA-A7-A0CE-01A-11W-A019-09		63901449	38629943	75	7128										
MAN2C1	0	genome.wustl.edu	37	chr15	75653492	75653493	+	Frame_Shift_Ins	INS	-	-	T													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gaggaaggcactgtggttggINScccgccccttgtcccggttg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	15	75653492	75653493	-	T	INS	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1355_1354	p.A452fs	1.000:0.999	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	8	0	0	5	3	37.5	-	-	-	T	75653493	-	T	75653492	7	5	116	1	0	1	1	0	0	0	0	0	9289	1203	42	0	1827	0	MAN2C1	15	75653492	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	11752043	75653492	26877900	76	7129										
RAB26	0	genome.wustl.edu	37	chr16	2203026	2203027	+	Frame_Shift_Del	DEL	GA	GA	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agcgtgtggtgaagagggagGacggggagaagctggccaag							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	2203026	2203027	GA	-	DEL	RAB26	ENST00000210187	human	ensembl	69_37n	1	known	frame_shift_del	c.571_572	p.D191fs	1.000:0.997	pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB26	HGNC	ENSG00000167964	20	0	0	2	2	50	-	-	-	-	2203027	GA	-	2203026	7	5	116	1	0	1	0	1	0	0	0	0	12996	1174	41	0	597	0	RAB26	16	2203026	Frame_Shift_Del	DEL	GA	TCGA-A7-A0CE-01A-11W-A019-09		2203026	88151727	77	7130										
SEPT12	0	genome.wustl.edu	37	chr16	4827934	4827935	+	Frame_Shift_Ins	INS	-	-	A													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	caggtggctttcattgagtcINStgatgacgcggtagttctca							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	4827934	4827935	-	A	INS	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	frame_shift_ins	c.941_940	p.R314fs	0.952:0.900	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	11	0	0	7	4	36.36	-	-	-	A	4827935	-	A	4827934	7	5	116	1	0	1	1	0	0	0	0	0	14150	913	32	0	139	0	SEPT12	16	4827934	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	2624908	4827934	85526819	78	7131										
SEC14L5	0	genome.wustl.edu	37	chr16	5061151	5061152	+	Frame_Shift_Ins	INS	-	-	C													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctccagtggcaaatgcacagINScccccccagcagcgtggcct							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	5061151	5061152	-	C	INS	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	frame_shift_ins	c.1856_1857	p.S622fs	0.002:0.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	10	0	0	5	2	28.57	-	-	-	C	5061152	-	C	5061151	7	5	116	1	0	1	1	0	0	0	0	0	14073	971	34	0	1910	0	SEC14L5	16	5061151	Frame_Shift_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	233217	5061151	85293602	79	7132										
ITGAX	0	genome.wustl.edu	37	chr16	31373464	31373464	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gccttcctgtaccccccaaaTatgagccctaccttcatcaa	4	17	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	31373464	31373464	T	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.1155	p.N385K	0.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	78	0	0	57	12	17.39	-	-	-	A	31373464	T	A	31373464	3	1	116	1	0	0	0	0	1	0	0	0	7943	1403	49	5	1197	5	ITGAX	16	31373464	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	26312313	31373464	58981289	80	7133										
SALL1	0	genome.wustl.edu	37	chr16	51172798	51172798	+	Frame_Shift_Del	DEL	G	G	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atgtggcagaggaagacagaGgcccagacgggacgtgactg							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	51172798	51172798	G	-	DEL	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	frame_shift_del	c.3335	p.P1112fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	73	0	0	16	33	64.71	-	-	-	-	51172798	G	-	51172798	7	5	116	1	0	1	0	1	0	0	0	0	13896	1000	35	0	647	0	SALL1	16	51172798	Frame_Shift_Del	DEL	G	TCGA-A7-A0CE-01A-11W-A019-09	19799334	51172798	39181955	81	7134										
HYDIN	0	genome.wustl.edu	37	chr16	71052178	71052178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tcctttgtctcaaagctgagGttggggtaatgcacttctcc	10	10	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	71052178	71052178	G	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.3498	p.N1166K	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	25	0	0	32	7	17.95	-	-	-	T	71052178	G	T	71052178	3	4	116	1	0	0	0	0	1	0	0	0	7521	1252	44	4	12120	4	HYDIN	16	71052178	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	19879380	71052178	19302575	82	7135										
GLG1	0	genome.wustl.edu	37	chr16	74514249	74514249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	accgtgggtgtggcaaagacGagaagcgtctccctggcact	14	11	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	16	74514249	74514249	G	C	SNP	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	missense	c.1717	p.R573G	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	123	0	0	86	75	46.58	-	-	-	C	74514249	G	C	74514249	3	2	116	1	0	0	0	0	1	0	0	0	6488	1058	37	3	1966	3	GLG1	16	74514249	Missense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	3462071	74514249	15840504	83	7136										
RTN4RL1	0	genome.wustl.edu	37	chr17	1840864	1840864	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	atgtaggtgatgttgttcgaGtagatccacagggtgaccat	13	6	0	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	1840864	1840864	G	C	SNP	RTN4RL1	ENST00000331238	human	ensembl	69_37n	-1	known	nonsense	c.252	p.Y84*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924	22	0	0	18	10	35.71	-	-	-	C	1840864	G	C	1840864	4	2	116	1	0	0	0	0	0	1	0	0	13817	1024	36	4	1077	4	RTN4RL1	17	1840864	Nonsense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		1840864	79354346	84	7137										
ZZEF1	0	genome.wustl.edu	37	chr17	3954156	3954156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggtggtggcactgctgcgcgTctgggggtccagcttctccc	16	13	2	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	3954156	3954156	T	C	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.5782	p.T1928A	0.103	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	167	0	0	74	33	30.84	-	-	-	C	3954156	T	C	3954156	3	2	116	1	0	0	0	0	1	0	0	0	18346	1667	58	5	3183	5	ZZEF1	17	3954156	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	2113292	3954156	77241054	85	7138										
TP53	0	genome.wustl.edu	37	chr17	7578467	7578467	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggccatggcgcggacgcgggTgccgggcgggggtgtggaat	23	9	0	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	4c81cd23-413c-45a2-bd6e-73212e75ab8c	17	7578467	7578467	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.463	p.T155P	0.003	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0	18	84	82.35	-	-	-	G	7578467	T	G	7578467	3	3	116	1	0	0	0	0	1	0	0	0	16477	1696	59	5	835	5	TP53	17	7578467	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09	3624311	7578467	73616743	86	7139										
TRPV2	0	genome.wustl.edu	37	chr17	16335509	16335509	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gtgctgctgctgctgctggcCtacgtgctgctcacctacat	11	14	1	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	16335509	16335509	C	A	SNP	TRPV2	ENST00000580788	human	ensembl	69_37n	1	putative	missense	c.130	p.L44I	0.712	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPV2	HGNC	ENSG00000187688	70	0	0	65	16	19.75	-	-	-	A	16335509	C	A	16335509	3	1	116	1	0	0	0	0	1	0	0	0	16692	668	24	4	1926	4	TRPV2	17	16335509	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	8757042	16335509	64859701	87	7140										
LRRC37A2	0	genome.wustl.edu	37	chr17	44627117	44627117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	agcaggaagtaaaggcatccAagatagaatgggatacggac	13	6	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	44627117	44627117	A	G	SNP	LRRC37A2	ENST00000333412	human	ensembl	69_37n	1	known	missense	c.4612	p.K1538E	0.005	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A2	HGNC	ENSG00000238083	37	0	0	9	3	25	-	-	-	G	44627117	A	G	44627117	3	3	116	1	0	0	0	0	1	0	0	0	9058	131	5	5	4646	5	LRRC37A2	17	44627117	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	28291608	44627117	36568093	88	7141										
HLF	0	genome.wustl.edu	37	chr17	53398079	53398079	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acatggcagccaagcgctccCgcgacgcccggaggctgaaa	13	15	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	53398079	53398079	C	G	SNP	HLF	ENST00000226067	human	ensembl	69_37n	1	known	missense	c.727	p.R243G	1.000	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	66	0	0	45	12	21.05	-	-	-	G	53398079	C	G	53398079	3	3	116	1	0	0	0	0	1	0	0	0	7265	652	23	3	741	3	HLF	17	53398079	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	8770962	53398079	27797131	89	7142										
MTMR4	0	genome.wustl.edu	37	chr17	56581186	56581186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgttttcttccccaagtgtgCatggagatgatgctggcaga	12	8	1	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	56581186	56581186	C	T	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.1730	p.C577Y	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	356	0	0	176	242	57.89	-	-	-	T	56581186	C	T	56581186	3	4	116	1	0	0	0	0	1	0	0	0	10018	710	25	4	1877	4	MTMR4	17	56581186	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	3183107	56581186	24614024	90	7143										
BPTF	0	genome.wustl.edu	37	chr17	65955782	65955783	+	In_Frame_Ins	INS	-	-	GCC													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cagcccctccagcccctccaINSccttcacctccccctccacc							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	65955782	65955783	-	GCC	INS	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	in_frame_ins	c.8430_8431	p.2810in_frame_insA	0.069:0.577	superfamily_Bromodomain	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	88	0	0	92	11	10.68	-	-	-	GCC	65955783	-	GCC	65955782	7	5	116	1	0	1	1	0	0	0	0	0	1503	146	6	0	8532	0	BPTF	17	65955782	In_Frame_Ins	INS	-	TCGA-A7-A0CE-01A-11W-A019-09	9374596	65955782	15239428	91	7144										
ABCA9	0	genome.wustl.edu	37	chr17	67020435	67020435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctgtcaatttggcatcagagAtgtgctgcttaaccagtgat	10	8	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	17	67020435	67020435	A	G	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.2201	p.I734T	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	111	0	0	75	24	24.24	-	-	-	G	67020435	A	G	67020435	3	3	116	1	0	0	0	0	1	0	0	0	39	333	12	5	2765	5	ABCA9	17	67020435	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	1064653	67020435	14174775	92	7145										
MAPK4	0	genome.wustl.edu	37	chr18	48252421	48252421	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	aacacccctacatgagcccaTactcgtgccctgaggacgag	9	15	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	18	48252421	48252421	T	A	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.943	p.Y315N	0.997	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	160	0	0	37	6	13.95	-	-	-	A	48252421	T	A	48252421	3	1	116	1	0	0	0	0	1	0	0	0	9351	1406	49	5	957	5	MAPK4	18	48252421	Missense_Mutation	SNP	T	TCGA-A7-A0CE-01A-11W-A019-09		48252421	29824827	93	7146										
DCC	0	genome.wustl.edu	37	chr18	50976883	50976883	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttcccagagccgccaattggAcaaatgcaccccccgcatgg	9	16	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	18	50976883	50976883	A	T	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	silent	c.3243	p.G1081	0.866	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	169	0	0	124	34	21.52	-	-	-	T	50976883	A	T	50976883	2	4	116	1	0	0	0	0	0	0	0	1	4313	262	10	5		5	DCC	18	50976883	Silent	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	2724462	50976883	27100365	94	7147										
ONECUT2	0	genome.wustl.edu	37	chr18	55143875	55143875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acttcttcatgaacgcccggCgccgcagcctggagaagtgg	13	13	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	18	55143875	55143875	C	T	SNP	ONECUT2	ENST00000262095	human	ensembl	69_37n	1	known	missense	c.1435	p.R479C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547	91	0	0	51	18	26.09	-	-	-	T	55143875	C	T	55143875	3	4	116	1	0	0	0	0	1	0	0	0	10942	768	27	1	1441	1	ONECUT2	18	55143875	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	4166992	55143875	22933373	95	7148										
TMIGD2	0	genome.wustl.edu	37	chr19	4298081	4298081	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acgccccgctgtggttgaggCtcacagggtccagctgcagg	15	13	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	4298081	4298081	C	A	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	missense	c.308	p.S103I	0.000	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	58	0	0	16	16	50	-	-	-	A	4298081	C	A	4298081	3	1	116	1	0	0	0	0	1	0	0	0	16326	797	28	4	556	4	TMIGD2	19	4298081	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09		4298081	54830902	96	7149										
RFX1	0	genome.wustl.edu	37	chr19	14076329	14076329	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ccagctctccaggctcttggCaaagttccggatcgcttggg	12	13	2	0			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	14076329	14076329	C	G	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	missense	c.2143	p.A715P	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	18	0	0	9	6	40	-	-	-	G	14076329	C	G	14076329	3	3	116	1	0	0	0	0	1	0	0	0	13345	710	25	4	820	4	RFX1	19	14076329	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	9778248	14076329	45052654	97	7150										
CYP4F8	0	genome.wustl.edu	37	chr19	15730493	15730493	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	acaagtggagacaccaccgtCgcttgtgacgcctgccttcc	10	15	0	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	15730493	15730493	C	T	SNP	CYP4F8	ENST00000441682	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.924	-	-	-	no_errors	CYP4F8	HGNC	ENSG00000186526	95	0	0	43	16	26.67	-	-	-	T	15730493	C	T	15730493	1	4	116	0	1	0	0	0	0	0	0	0	4222	884	31	1		1	CYP4F8	19	15730493	RNA	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	1654164	15730493	43398490	98	7151										
TSHZ3	0	genome.wustl.edu	37	chr19	31767507	31767507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tggtcttccggagatttcccGtgtgttttgctaaggtgaag	13	7	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	31767507	31767507	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.3192	p.H1064	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	79	0	0	56	40	41.67	-	-	-	A	31767507	G	A	31767507	2	1	116	1	0	0	0	0	0	0	0	1	16721	1136	40	1		1	TSHZ3	19	31767507	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	16037014	31767507	27361476	99	7152										
FCGBP	0	genome.wustl.edu	37	chr19	40392553	40392553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctgatacttcttctccagctCgggaggacactcctcgctgg	10	14	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	40392553	40392553	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.7951	p.E2651K	0.100	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	107	0	0	33	18	35.29	-	-	-	T	40392553	C	T	40392553	3	4	116	1	0	0	0	0	1	0	0	0	5824	893	31	1	8350	1	FCGBP	19	40392553	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	8625046	40392553	18736430	100	7153										
CEACAM5	0	genome.wustl.edu	37	chr19	42213656	42213656	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	caagctcactattgaatccaCgccgttcaatgtcgcagagg	9	12	2	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	42213656	42213656	C	G	SNP	CEACAM5	ENST00000221992	human	ensembl	69_37n	1	known	missense	c.122	p.T41R	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM5	HGNC	ENSG00000105388	472	0	0	356	103	22.44	-	-	-	G	42213656	C	G	42213656	3	3	116	1	0	0	0	0	1	0	0	0	3224	536	19	3	128	3	CEACAM5	19	42213656	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	1821103	42213656	16915327	101	7154										
QPCTL	0	genome.wustl.edu	37	chr19	46196814	46196814	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ggaaatctccaagtcagaaaGgtaaagggacccacctccag	10	11	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	46196814	46196814	G	A	SNP	QPCTL	ENST00000012049	human	ensembl	69_37n	1	known	silent	c.351	p.K117	1.000	NULL	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478	106	0	0	41	10	19.61	-	-	-	A	46196814	G	A	46196814	2	1	116	1	0	0	0	0	0	0	0	1	12958	1014	35	4		4	QPCTL	19	46196814	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	3983158	46196814	12932169	102	7155										
STRN4	0	genome.wustl.edu	37	chr19	47240084	47240084	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ccccgagcacactcactgtcGgagaagctgccgcccctcct	9	19	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	47240084	47240084	G	A	SNP	STRN4	ENST00000391910	human	ensembl	69_37n	-1	known	nonsense	c.535	p.R179*	1.000	pfam_Striatin_N	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372	173	0	0	51	16	23.88	-	-	-	A	47240084	G	A	47240084	4	1	116	1	0	0	0	0	0	1	0	0	15422	1124	39	1	1803	1	STRN4	19	47240084	Nonsense_Mutation	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09	1043270	47240084	11888899	103	7156										
CCDC9	0	genome.wustl.edu	37	chr19	47769965	47769965	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctggaagcaggagagggagaAgatcgaccaggagcggctgc	18	8	0	3			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	47769965	47769965	A	T	SNP	CCDC9	ENST00000221922	human	ensembl	69_37n	1	known	missense	c.818	p.K273M	0.998	NULL	NULL	-	no_errors	CCDC9	HGNC	ENSG00000105321	23	0	0	5	5	50	-	-	-	T	47769965	A	T	47769965	3	4	116	1	0	0	0	0	1	0	0	0	2894	72	3	5	844	5	CCDC9	19	47769965	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	529881	47769965	11359018	104	7157										
LILRA1	0	genome.wustl.edu	37	chr19	55107753	55107753	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tcagtcatgggggccgttccAcactttccttctgaccaagg	10	13	3	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	19	55107753	55107753	A	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.1058	p.H353L	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	79	0	0	64	31	32.63	-	-	-	T	55107753	A	T	55107753	3	4	116	1	0	0	0	0	1	0	0	0	8839	159	6	5	1080	5	LILRA1	19	55107753	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	7337788	55107753	4021230	105	7158										
MAVS	0	genome.wustl.edu	37	chr20	3846668	3846668	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cccaggccacaagccgaccgGaagttccaggagagggaggt	15	12	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	20	3846668	3846668	G	C	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	silent	c.1497	p.R499	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	19	0	0	8	10	55.56	-	-	-	C	3846668	G	C	3846668	2	2	116	1	0	0	0	0	0	0	0	1	9409	1161	41	2		2	MAVS	20	3846668	Silent	SNP	G	TCGA-A7-A0CE-01A-11W-A019-09		3846668	59178852	106	7159										
CYTH4	0	genome.wustl.edu	37	chr22	37699430	37699430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	caatggtagcgacctgcccgAggaccagctgcgggtgagag	16	11	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	22	37699430	37699430	A	G	SNP	CYTH4	ENST00000248901	human	ensembl	69_37n	1	known	missense	c.683	p.E228G	0.999	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH4	HGNC	ENSG00000100055	31	0	0	30	12	28.57	-	-	-	G	37699430	A	G	37699430	3	3	116	1	0	0	0	0	1	0	0	0	4237	304	11	5	713	5	CYTH4	22	37699430	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09		37699430	13605136	107	7160										
MOV10L1	0	genome.wustl.edu	37	chr22	50528920	50528920	+	Frame_Shift_Del	DEL	G	G	-													0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tctccatgtcgttcctccctGtccgcagcgtcattggcggt							TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	22	50528920	50528920	G	-	DEL	MOV10L1	ENST00000540615	human	ensembl	69_37n	1	known	frame_shift_del	c.16	p.V6fs	0.002	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	11	0	0	4	2	33.33	-	-	-	-	50528920	G	-	50528920	7	5	116	1	0	1	0	1	0	0	0	0	9791	1377	48	0	119	0	MOV10L1	22	50528920	Frame_Shift_Del	DEL	G	TCGA-A7-A0CE-01A-11W-A019-09	12829490	50528920	775646	108	7161										
TBC1D25	0	genome.wustl.edu	37	chrX	48418941	48418941	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ctttattgaactccccagacCcactgctctcctccttttcc	3	18	1	2			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	X	48418941	48418941	C	G	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1645	p.P549A	0.157	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	164	0	0	37	50	57.47	-	-	-	G	48418941	C	G	48418941	3	3	116	1	0	0	0	0	1	0	0	0	15707	623	22	4	1667	4	TBC1D25	23	48418941	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09		48418941	106851619	109	7162										
MED12	0	genome.wustl.edu	37	chrX	70357092	70357092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	ttaccaatgcagaagctgccCacccgaccaacttaccctgg	7	16	0	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	X	70357092	70357092	C	T	SNP	MED12	ENST00000444034	human	ensembl	69_37n	1	known	missense	c.269	p.P90L	0.001	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_catenin-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MED12	HGNC	ENSG00000184634	111	0	0	41	20	32.79	-	-	-	T	70357092	C	T	70357092	3	4	116	1	0	0	0	0	1	0	0	0	9499	581	21	4	5761	4	MED12	23	70357092	Missense_Mutation	SNP	C	TCGA-A7-A0CE-01A-11W-A019-09	21938151	70357092	84913468	110	7163										
CYSLTR1	0	genome.wustl.edu	37	chrX	77528443	77528443	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	tgcattctaaggacagaatcAcagggtttagtttcattgtg	10	6	3	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	X	77528443	77528443	A	C	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	missense	c.801	p.C267W	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,prints_CLT1_recept,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	201	1	0.49	97	47	32.41	-	-	-	C	77528443	A	C	77528443	3	2	116	1	0	0	0	0	1	0	0	0	4232	157	6	5	216	5	CYSLTR1	23	77528443	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	7171351	77528443	77742117	111	7164										
SATL1	0	genome.wustl.edu	37	chrX	84349172	84349172	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	cataaaagtcctctaggtaaAgtaccttgccagtccatgag	8	10	1	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	X	84349172	84349172	A	T	SNP	SATL1	ENST00000509231	human	ensembl	69_37n	-1	known	missense	c.1838	p.L613H	1.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	223	0	0	56	106	65.03	-	-	-	T	84349172	A	T	84349172	3	4	116	1	0	0	0	0	1	0	0	0	13942	72	3	5	68	5	SATL1	23	84349172	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	6820729	84349172	70921388	112	7165										
CXorf66	0	genome.wustl.edu	37	chrX	139038828	139038828	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0442477876106195	5	0.987094234114834	0.791111111111111	1.78	0	0.0256410256410257	0.251737451737452	0	gggttgtgtttctggactgcAttgagaggctgtcttggctt	15	6	2	1			TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8c1bd4a-69aa-4496-96d0-d580d1ccc04c	40f1c52b-2063-4541-8600-865735b708b0	X	139038828	139038828	A	T	SNP	CXorf66	ENST00000370540	human	ensembl	69_37n	-1	known	missense	c.313	p.C105S	0.000	NULL	NULL	-	no_errors	CXorf66	HGNC	ENSG00000203933	523	0	0	349	88	20.09	-	-	-	T	139038828	A	T	139038828	3	4	116	1	0	0	0	0	1	0	0	0	4149	217	8	5	776	5	CXorf66	23	139038828	Missense_Mutation	SNP	A	TCGA-A7-A0CE-01A-11W-A019-09	54689656	139038828	16231732	113	7166										
CFH	0	genome.wustl.edu	37	chr1	196684769	196684769	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	aatgccagaactaaaaatgaCttcacatggtttaagctgaa	7	7	1	3			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	1	196684769	196684769	C	A	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.1566	p.D522E	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	193	0	0	314	64	16.89	-	-	-	A	196684769	C	A	196684769	3	1	117	1	0	0	0	0	1	0	0	0	3312	564	20	4	1626	4	CFH	1	196684769	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09		196684769	52565852	1	7167										
SEMA3B	0	genome.wustl.edu	37	chr3	50311832	50311832	+	RNA	DEL	G	G	-													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ggcaccttcagttccaccaaGgacttcccagacgatgtcat							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	3	50311832	50311832	G	-	DEL	SEMA3B	ENST00000316347	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171	69	0	0	13	2	13.33	-	-	-	-	50311832	G	-	50311832	6	5	117	0	1	1	0	1	0	0	0	0	14113	991	35	0		0	SEMA3B	3	50311832	RNA	DEL	G	TCGA-A7-A0CG-01A-11W-A019-09		50311832	147710598	2	7168										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	185	1	0.54	310	82	20.87	-	-	-	G	178952085	A	G	178952085	3	3	117	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A7-A0CG-01A-11W-A019-09	128640253	178952085	19070345	3	7169										
ARAP2	0	genome.wustl.edu	37	chr4	36212227	36212227	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tttgaattttttcttcttaaActctgaaagcattcttctac	3	8	5	2			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	4	36212227	36212227	A	T	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.1272	p.S424R	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	373	0	0	471	99	17.34	-	-	-	T	36212227	A	T	36212227	3	4	117	1	0	0	0	0	1	0	0	0	841	40	2	5	3954	5	ARAP2	4	36212227	Missense_Mutation	SNP	A	TCGA-A7-A0CG-01A-11W-A019-09		36212227	154942049	4	7170										
EXOC3	0	genome.wustl.edu	37	chr5	457086	457087	+	In_Frame_Ins	INS	-	-	AGG													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	gctttctccacacgtggtctINSctgagctgcttgacacgtac							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	5	457086	457087	-	AGG	INS	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	in_frame_ins	c.1129_1130	p.SELL377in_frame_ins*	1.000:1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	14	0	0	19	12	38.71	-	-	-	AGG	457087	-	AGG	457086	7	5	117	1	0	1	1	0	0	0	0	0	5339	1551	54	0	1143	0	EXOC3	5	457086	In_Frame_Ins	INS	-	TCGA-A7-A0CG-01A-11W-A019-09		457086	180458174	5	7171										
B3GAT2	0	genome.wustl.edu	37	chr6	71603840	71603840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	acactgctcacctgccatgtCgatggcaaaaggcctgtctg	10	13	2	0			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	6	71603840	71603840	C	T	SNP	B3GAT2	ENST00000230053	human	ensembl	69_37n	-1	known	missense	c.727	p.D243N	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT2	HGNC	ENSG00000112309	142	0	0	123	28	18.54	-	-	-	T	71603840	C	T	71603840	3	4	117	1	0	0	0	0	1	0	0	0	1258	884	31	1	256	1	B3GAT2	6	71603840	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09		71603840	99511227	6	7172										
EIF3B	0	genome.wustl.edu	37	chr7	2409146	2409146	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ggtggtaacataatcgccttCtgggtgcctgaagacaaaga	12	8	1	3			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	7	2409146	2409146	C	T	SNP	EIF3B	ENST00000360876	human	ensembl	69_37n	1	known	silent	c.1443	p.F481	0.993	pirsf_eIF3b	pfam_TIF2A_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3b,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263	165	0	0	354	137	27.79	-	-	-	T	2409146	C	T	2409146	2	4	117	1	0	0	0	0	0	0	0	1	5048	912	32	2		2	EIF3B	7	2409146	Silent	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09		2409146	156729517	7	7173										
PAPOLB	0	genome.wustl.edu	37	chr7	4900572	4900572	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ttaagattccgttcttcaggCtccttcagtaacactgggtt	8	10	3	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	7	4900572	4900572	C	T	SNP	PAPOLB	ENST00000404991	human	ensembl	69_37n	-1	known	silent	c.867	p.E289	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823	315	0	0	108	23	17.56	-	-	-	T	4900572	C	T	4900572	2	4	117	1	0	0	0	0	0	0	0	1	11503	796	28	4		4	PAPOLB	7	4900572	Silent	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	2491426	4900572	154238091	8	7174										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138394499	138394499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tccccagcctcgcgtctgaaGgccgctgttcatcaccatag	9	16	3	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	7	138394499	138394499	G	C	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	missense	c.2299	p.L767V	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	245	0	0	345	87	20.09	-	-	-	C	138394499	G	C	138394499	3	2	117	1	0	0	0	0	1	0	0	0	1174	1000	35	4	231	4	ATP6V0A4	7	138394499	Missense_Mutation	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09	133493927	138394499	20744164	9	7175										
KLF4	0	genome.wustl.edu	37	chr9	110249348	110249348	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tgccttgagatgggaactctTtgtgtaggttttgccgcagc	13	8	1	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	9	110249348	110249348	T	G	SNP	KLF4	ENST00000374672	human	ensembl	69_37n	-1	known	missense	c.1225	p.K409Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826	70	0	0	11	6	35.29	-	-	-	G	110249348	T	G	110249348	3	3	117	1	0	0	0	0	1	0	0	0	8401	1850	64	5	222	5	KLF4	9	110249348	Missense_Mutation	SNP	T	TCGA-A7-A0CG-01A-11W-A019-09		110249348	30964083	10	7176										
OR13A1	0	genome.wustl.edu	37	chr10	45799219	45799219	+	Frame_Shift_Del	DEL	C	C	-													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	gtagaaagcatccgccaggaCaatcatgacaccgttgacgt							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	10	45799219	45799219	C	-	DEL	OR13A1	ENST00000374401	human	ensembl	69_37n	-1	known	frame_shift_del	c.652	p.V218fs	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574	133	0	0	100	94	47.96	-	-	-	-	45799219	C	-	45799219	7	5	117	1	0	1	0	1	0	0	0	0	11006	478	17	0	338	0	OR13A1	10	45799219	Frame_Shift_Del	DEL	C	TCGA-A7-A0CG-01A-11W-A019-09		45799219	89735528	11	7177										
DNTT	0	genome.wustl.edu	37	chr10	98064304	98064304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ccctcggaagaagagaccccGgcagacgggtgccttgatgg	15	12	0	4			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	10	98064304	98064304	G	A	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.50	p.R17Q	0.144	pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	93	0	0	91	29	24.17	-	-	-	A	98064304	G	A	98064304	3	1	117	1	0	0	0	0	1	0	0	0	4715	1116	39	1	52	1	DNTT	10	98064304	Missense_Mutation	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09	52265085	98064304	37470443	12	7178										
MRPL43	0	genome.wustl.edu	37	chr10	102746498	102746499	+	Frame_Shift_Ins	INS	-	-	C													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tggggcaactcttcactgtgINScttgcacctgggctggggca							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	10	102746498	102746499	-	C	INS	MRPL43	ENST00000318364	human	ensembl	69_37n	-1	known	frame_shift_ins	c.473_472	p.A158fs	0.000:0.000	NULL	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	-	no_errors	MRPL43	HGNC	ENSG00000055950	21	0	0	5	3	37.5	-	-	-	C	102746499	-	C	102746498	7	5	117	1	0	1	1	0	0	0	0	0	9879	1319	46	0	417	0	MRPL43	10	102746498	Frame_Shift_Ins	INS	-	TCGA-A7-A0CG-01A-11W-A019-09	4682194	102746498	32788249	13	7179										
LYVE1	0	genome.wustl.edu	37	chr11	10590003	10590003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tgagaaacctaccttctgcaCgcaaagagccttggaccagg	10	12	1	2			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	11	10590003	10590003	C	T	SNP	LYVE1	ENST00000256178	human	ensembl	69_37n	-1	known	missense	c.77	p.R26H	0.000	NULL	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	-	no_errors	LYVE1	HGNC	ENSG00000133800	83	0	0	77	19	19.79	-	-	-	T	10590003	C	T	10590003	3	4	117	1	0	0	0	0	1	0	0	0	9196	536	19	1	915	1	LYVE1	11	10590003	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09		10590003	124416513	14	7180										
MADD	0	genome.wustl.edu	37	chr11	47304060	47304060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ctcctttctagcctcacgtcCccggcagactccttttgccg	7	18	2	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	11	47304060	47304060	C	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.1598	p.P533L	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	97	0	0	187	39	17.26	-	-	-	T	47304060	C	T	47304060	3	4	117	1	0	0	0	0	1	0	0	0	9219	623	22	4	1628	4	MADD	11	47304060	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	36714057	47304060	87702456	15	7181										
KBTBD4	0	genome.wustl.edu	37	chr11	47599398	47599398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	gagctgaaactcccggccttCcaccgaaatggtgacatcag	10	13	1	2			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	11	47599398	47599398	C	T	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	missense	c.202	p.E68K	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	43	0	0	41	301	75.44	-	-	-	T	47599398	C	T	47599398	3	4	117	1	0	0	0	0	1	0	0	0	8049	864	30	2	1414	2	KBTBD4	11	47599398	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	295338	47599398	87407118	16	7182										
WNK1	0	genome.wustl.edu	37	chr12	970284	970284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	gagagcagcggcagttggtaCgggaggagcaagaaaaaaaa	16	5	0	2			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	12	970284	970284	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.1726	p.R576W	0.957	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	402	1	0.24	430	96	18.01	-	-	-	T	970284	C	T	970284	3	4	117	1	0	0	0	0	1	0	0	0	17474	527	19	1	1752	1	WNK1	12	970284	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09		970284	132881611	17	7183										
GALNT6	0	genome.wustl.edu	37	chr12	51758021	51758021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tggactctgcccctctggacGggcttggcgaactcaaaagt	12	12	3	0			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	12	51758021	51758021	G	A	SNP	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	silent	c.933	p.P311	0.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	102	0	0	49	33	40.24	-	-	-	A	51758021	G	A	51758021	2	1	117	1	0	0	0	0	0	0	0	1	6267	1103	39	1		1	GALNT6	12	51758021	Silent	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09	50787737	51758021	82093874	18	7184										
GANC	0	genome.wustl.edu	37	chr15	42602936	42602936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ttgctgctaaacaaaaggtcAgatctcgcactcatgtgcac	8	11	3	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	15	42602936	42602936	A	G	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	missense	c.949	p.R317G	0.073	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	321	1	0.31	352	81	18.71	-	-	-	G	42602936	A	G	42602936	3	3	117	1	0	0	0	0	1	0	0	0	6284	180	7	5	987	5	GANC	15	42602936	Missense_Mutation	SNP	A	TCGA-A7-A0CG-01A-11W-A019-09		42602936	59928456	19	7185										
FGF7	0	genome.wustl.edu	37	chr15	49716681	49716681	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	atgattacatggaaggagggGatataagagtgagaagactc	14	3	0	4			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	15	49716681	49716681	G	C	SNP	FGF7	ENST00000267843	human	ensembl	69_37n	1	known	missense	c.187	p.D63H	1.000	superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF7	HGNC	ENSG00000140285	272	0	0	293	74	20.16	-	-	-	C	49716681	G	C	49716681	3	2	117	1	0	0	0	0	1	0	0	0	5903	1174	41	2	189	2	FGF7	15	49716681	Missense_Mutation	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09	7113745	49716681	52814711	20	7186										
DDX28	0	genome.wustl.edu	37	chr16	68055678	68055679	+	Frame_Shift_Ins	INS	-	-	G													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ggatgtaatcttgcagcgttINSggggggaaatcataattgac							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	16	68055678	68055679	-	G	INS	DDX28	ENST00000332395	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1428_1427	p.T477fs	0.173:0.181	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810	62	0	0	23	5	17.86	-	-	-	G	68055679	-	G	68055678	7	5	117	1	0	1	1	0	0	0	0	0	4386	1799	63	0	198	0	DDX28	16	68055678	Frame_Shift_Ins	INS	-	TCGA-A7-A0CG-01A-11W-A019-09		68055678	22299075	21	7187										
CRHR1	0	genome.wustl.edu	37	chr17	43911164	43911165	+	Frame_Shift_Ins	INS	-	-	T													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	tcaatcccggggaggatgagINSgtctcccgggtcgtcttcat							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	17	43911164	43911165	-	T	INS	CRHR1	ENST00000398285	human	ensembl	69_37n	1	known	frame_shift_ins	c.1101_1102	p.V367fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088	29	0	0	13	27	67.5	-	-	-	T	43911165	-	T	43911164	7	5	117	1	0	1	1	0	0	0	0	0	3901	991	35	0	1147	0	CRHR1	17	43911164	Frame_Shift_Ins	INS	-	TCGA-A7-A0CG-01A-11W-A019-09		43911164	37284046	22	7188	56	2								
CRHR1	0	genome.wustl.edu	37	chr17	43911167	43911168	+	Frame_Shift_Ins	INS	-	-	A													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	atcccggggaggatgaggtcINStcccgggtcgtcttcatcta							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	17	43911167	43911168	-	A	INS	CRHR1	ENST00000398285	human	ensembl	69_37n	1	known	frame_shift_ins	c.1104_1105	p.S368fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088	31	0	0	15	27	64.29	-	-	-	A	43911168	-	A	43911167	7	5	117	1	0	1	1	0	0	0	0	0	3901	900	32	0	1150	0	CRHR1	17	43911167	Frame_Shift_Ins	INS	-	TCGA-A7-A0CG-01A-11W-A019-09	3	43911167	37284043	23	7189	56	2								
MYO5B	0	genome.wustl.edu	37	chr18	47431047	47431047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	agagtggctactcacctggcGgtaggttctccgcacaaaca	11	12	2	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	18	47431047	47431047	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.2566	p.R856C	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	34	0	0	27	9	25	-	-	-	A	47431047	G	A	47431047	3	1	117	1	0	0	0	0	1	0	0	0	10151	1116	39	1	3064	1	MYO5B	18	47431047	Missense_Mutation	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09		47431047	30646201	24	7190										
CXADR	0	genome.wustl.edu	37	chr21	18931412	18931412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	cagtatgagtggcaaaaattGtctgactcacagaaaatgcc	9	8	2	3			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	21	18931412	18931412	G	A	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	silent	c.534	p.L178	0.762	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CXADR	HGNC	ENSG00000154639	279	0	0	272	61	18.32	-	-	-	A	18931412	G	A	18931412	2	1	117	1	0	0	0	0	0	0	0	1	4107	1368	48	4		4	CXADR	21	18931412	Silent	SNP	G	TCGA-A7-A0CG-01A-11W-A019-09		18931412	29198483	25	7191										
MICALL1	0	genome.wustl.edu	37	chr22	38327919	38327919	+	Frame_Shift_Del	DEL	C	C	-													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ccacctgcccctggacacggCtttccactcatcaaacgcaa							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	22	38327919	38327919	C	-	DEL	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	frame_shift_del	c.1995	p.P667fs	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	37	0	0	24	66	68.04	-	-	-	-	38327919	C	-	38327919	7	5	117	1	0	1	0	1	0	0	0	0	9644	784	28	0	2033	0	MICALL1	22	38327919	Frame_Shift_Del	DEL	C	TCGA-A7-A0CG-01A-11W-A019-09		38327919	12976647	26	7192	57	2								
MICALL1	0	genome.wustl.edu	37	chr22	38327923	38327924	+	Frame_Shift_Del	DEL	CC	CC	-													0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ctgcccctggacacggctttCcactcatcaaacgcaaggta							TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	22	38327923	38327924	CC	-	DEL	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	frame_shift_del	c.1999_2000	p.P667fs	1.000:1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	34	0	0	23	66	74.16	-	-	-	-	38327924	CC	-	38327923	7	5	117	1	0	1	0	1	0	0	0	0	9644	855	30	0	2037	0	MICALL1	22	38327923	Frame_Shift_Del	DEL	CC	TCGA-A7-A0CG-01A-11W-A019-09	4	38327923	12976643	27	7193	57	2								
ATXN3L	0	genome.wustl.edu	37	chrX	13337012	13337012	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ttcccctttgattttcaaatTctttctcataatttctaaaa	1	9	4	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	X	13337012	13337012	T	A	SNP	ATXN3L	ENST00000380622	human	ensembl	69_37n	-1	known	missense	c.1042	p.N348Y	0.006	NULL	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3L	HGNC	ENSG00000123594	366	0	0	425	98	18.74	-	-	-	A	13337012	T	A	13337012	3	1	117	1	0	0	0	0	1	0	0	0	1218	1783	62	5	29	5	ATXN3L	23	13337012	Missense_Mutation	SNP	T	TCGA-A7-A0CG-01A-11W-A019-09		13337012	141933548	28	7194										
CXorf58	0	genome.wustl.edu	37	chrX	23934438	23934438	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	aaaaaatgtattaatgccgtCaagtaaggtgacgtttcatg	9	5	2	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	X	23934438	23934438	C	A	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	nonsense	c.416	p.S139*	0.803	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	71	0	0	76	26	25.49	-	-	-	A	23934438	C	A	23934438	4	1	117	1	0	0	0	0	0	1	0	0	4145	838	29	2	430	2	CXorf58	23	23934438	Nonsense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	10597426	23934438	131336122	29	7195										
FAM47C	0	genome.wustl.edu	37	chrX	37027582	37027582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	agactcgcgtatctcctctcCgccagctgcctcccgaggct	9	18	2	1			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	X	37027582	37027582	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.1099	p.R367C	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	237	0	0	233	60	20.48	-	-	-	T	37027582	C	T	37027582	3	4	117	1	0	0	0	0	1	0	0	0	5617	652	23	1	1101	1	FAM47C	23	37027582	Missense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	13093144	37027582	118242978	30	7196										
ZCCHC16	0	genome.wustl.edu	37	chrX	111698592	111698592	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	1	0.385361552028219	0	0.449588477366255	1	1	0	ccagacctgatcactcagtgCattcagttggacaagaaaca	8	11	3	3			TCGA-A7-A0CG-01A-11W-A019-09	TCGA-A7-A0CG-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351275c7-70ca-4ddc-be76-a6ff4dc7655e	b7b01df0-5282-4fbd-89f4-d52e050d047a	X	111698592	111698592	C	A	SNP	ZCCHC16	ENST00000340433	human	ensembl	69_37n	1	known	nonsense	c.636	p.C212*	0.999	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823	873	0	0	808	189	18.96	-	-	-	A	111698592	C	A	111698592	4	1	117	1	0	0	0	0	0	1	0	0	17680	718	25	4	638	4	ZCCHC16	23	111698592	Nonsense_Mutation	SNP	C	TCGA-A7-A0CG-01A-11W-A019-09	74671010	111698592	43571968	31	7197										
C1orf198	0	genome.wustl.edu	37	chr1	230979500	230979500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	tggtggggcccagggcgtccAggctggaggacctgctgcct	18	12	0	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	1	230979500	230979500	A	G	SNP	C1orf198	ENST00000366663	human	ensembl	69_37n	-1	known	missense	c.527	p.L176P	0.131	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280	125	0	0	196	60	23.26	-	-	-	G	230979500	A	G	230979500	3	3	118	1	0	0	0	0	1	0	0	0	2045	188	7	5	464	5	C1orf198	1	230979500	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09		230979500	18271121	1	7198										
RYR2	0	genome.wustl.edu	37	chr1	237947546	237947546	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ttcatatttgacgtggtcaaCgaaggcggagagaaagagaa	13	5	2	3			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	1	237947546	237947546	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.12552	p.N4184	0.242	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	265	0	0	211	59	21.85	-	-	-	T	237947546	C	T	237947546	2	4	118	1	0	0	0	0	0	0	0	1	13855	535	19	1		1	RYR2	1	237947546	Silent	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09	6968046	237947546	11303075	2	7199										
AFTPH	0	genome.wustl.edu	37	chr2	64780391	64780391	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ttggagaccagcaggctactGaatctcatcatcgaaaggaa	10	9	2	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	2	64780391	64780391	G	A	SNP	AFTPH	ENST00000422803	human	ensembl	69_37n	1	known	missense	c.1783	p.E595K	0.977	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844	206	0	0	144	29	16.67	-	-	-	A	64780391	G	A	64780391	3	1	118	1	0	0	0	0	1	0	0	0	364	1291	45	2	1785	2	AFTPH	2	64780391	Missense_Mutation	SNP	G	TCGA-A7-A0CH-01A-21W-A019-09		64780391	178418982	3	7200										
WNT7A	0	genome.wustl.edu	37	chr3	13916460	13916460	+	Frame_Shift_Del	DEL	C	C	-													0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	atacccactttgagctccttCccgaagacggtgcgctctcc							TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-11A-32W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6	3	13916460	13916460	C	-	DEL	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	frame_shift_del	c.282	p.K95fs	0.699	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	61	0	0	15	2	11.76	-	-	-	-	13916460	C	-	13916460	7	5	118	1	0	1	0	1	0	0	0	0	17491	842	30	0	779	0	WNT7A	3	13916460	Frame_Shift_Del	DEL	C	TCGA-A7-A0CH-01A-21W-A019-09		13916460	184105970	4	7201										
DHX36	0	genome.wustl.edu	37	chr3	153995455	153995455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gtctgtttgctccacattaaCagatttaggatgaacagcaa	8	8	1	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	153995455	153995455	C	T	SNP	DHX36	ENST00000496811	human	ensembl	69_37n	-1	known	missense	c.2620	p.V874I	1.000	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953	158	0	0	52	51	49.51	-	-	-	T	153995455	C	T	153995455	3	4	118	1	0	0	0	0	1	0	0	0	4545	478	17	4	418	4	DHX36	3	153995455	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09	140078995	153995455	44026975	5	7202										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	97	0	0	36	43	54.43	-	-	-	A	178936091	G	A	178936091	3	1	118	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A7-A0CH-01A-21W-A019-09	24940636	178936091	19086339	6	7203										
KLHL24	0	genome.wustl.edu	37	chr3	183368623	183368623	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	tgcatgtgccaagttcttggAggagcaacttgatccttgta	11	8	1	1			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	183368623	183368623	A	C	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.479	p.E160A	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	188	0	0	166	91	35.27	-	-	-	C	183368623	A	C	183368623	3	2	118	1	0	0	0	0	1	0	0	0	8432	304	11	5	481	5	KLHL24	3	183368623	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09	4432532	183368623	14653807	7	7204										
MAN2B2	0	genome.wustl.edu	37	chr4	6590876	6590877	+	Frame_Shift_Ins	INS	-	-	AA													0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gcaccccgtcccacatccctINSttctccaacaggtacgtgcc							TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	4	6590876	6590877	-	AA	INS	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	frame_shift_ins	c.669_670	p.F223fs	0.947:1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	16	0	0	42	21	33.33	-	-	-	AA	6590877	-	AA	6590876	7	5	118	1	0	1	1	0	0	0	0	0	9288	1596	56	0	687	0	MAN2B2	4	6590876	Frame_Shift_Ins	INS	-	TCGA-A7-A0CH-01A-21W-A019-09		6590876	184563400	8	7205										
CLNK	0	genome.wustl.edu	37	chr4	10566399	10566399	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	tgcaaccttgaaatagtgtgTatctatgcaaacagaaaaat	7	6	1	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	4	10566399	10566399	T	C	SNP	CLNK	ENST00000226951	human	ensembl	69_37n	-1	known	missense	c.295	p.T99A	0.623	NULL	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	66	0	0	38	25	39.68	-	-	-	C	10566399	T	C	10566399	3	2	118	1	0	0	0	0	1	0	0	0	3577	1638	57	5	1043	5	CLNK	4	10566399	Missense_Mutation	SNP	T	TCGA-A7-A0CH-01A-21W-A019-09	3975523	10566399	180587877	9	7206										
FRYL	0	genome.wustl.edu	37	chr4	48588708	48588708	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ccttggaatcgcagcaatacAagttctaaacaaatcaatct	5	10	3	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	4	48588708	48588708	A	G	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.1678	p.C560R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	341	0	0	149	100	40.16	-	-	-	G	48588708	A	G	48588708	3	3	118	1	0	0	0	0	1	0	0	0	6113	130	5	5	7547	5	FRYL	4	48588708	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09	38022309	48588708	142565568	10	7207										
PELO	0	genome.wustl.edu	37	chr5	52097628	52097628	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	cattctccgcttccctgttcCcgaactttctgaccaagagg	7	15	2	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	5	52097628	52097628	C	A	SNP	PELO	ENST00000274311	human	ensembl	69_37n	1	known	missense	c.1112	p.P371H	1.000	NULL	pfam_eRF1_1_Pelota,pfam_eRF1_2,pfam_eRF1_3,tigrfam_Transl_rel_pelota-like	-	no_errors	PELO	HGNC	ENSG00000152684	39	0	0	43	28	39.44	-	-	-	A	52097628	C	A	52097628	3	1	118	1	0	0	0	0	1	0	0	0	11797	623	22	4	1118	4	PELO	5	52097628	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		52097628	128817632	11	7208										
HIST1H2AI	0	genome.wustl.edu	37	chr6	27776209	27776209	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ggcaacgcggcccgcgacaaCaagaagactcgcatcatccc	10	16	1	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	6	27776209	27776209	C	G	SNP	HIST1H2AI	ENST00000358739	human	ensembl	69_37n	1	known	missense	c.222	p.N74K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AI	HGNC	ENSG00000196747	40	0	0	40	24	37.5	-	-	-	G	27776209	C	G	27776209	3	3	118	1	0	0	0	0	1	0	0	0	7186	477	17	4	224	4	HIST1H2AI	6	27776209	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		27776209	143338858	12	7209										
MDGA1	0	genome.wustl.edu	37	chr6	37622129	37622129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	cagttgtagtagccagagtcCcgggcctgcactgaagggat	14	10	0	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	6	37622129	37622129	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	silent	c.903	p.R301	0.821	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	22	0	0	17	12	41.38	-	-	-	T	37622129	C	T	37622129	2	4	118	1	0	0	0	0	0	0	0	1	9477	610	22	4		4	MDGA1	6	37622129	Silent	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09	9845920	37622129	133492938	13	7210										
WDR91	0	genome.wustl.edu	37	chr7	134890683	134890683	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ccgtcacacacactcacagtTccgagtcccccaggcggtcc	8	19	2	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	7	134890683	134890683	T	C	SNP	WDR91	ENST00000354475	human	ensembl	69_37n	-1	known	missense	c.722	p.E241G	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875	90	0	0	59	40	40.4	-	-	-	C	134890683	T	C	134890683	3	2	118	1	0	0	0	0	1	0	0	0	17435	1783	62	5	1565	5	WDR91	7	134890683	Missense_Mutation	SNP	T	TCGA-A7-A0CH-01A-21W-A019-09		134890683	24247980	14	7211										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138738313	138738313	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ggagttttccttcttccttcAtctgcgatttcttcctaata	5	11	4	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	7	138738313	138738313	A	T	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.2333	p.M778K	0.992	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	187	0	0	139	82	36.94	-	-	-	T	138738313	A	T	138738313	3	4	118	1	0	0	0	0	1	0	0	0	17671	217	8	5	383	5	ZC3HAV1	7	138738313	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09	3847630	138738313	20400350	15	7212										
UNC5D	0	genome.wustl.edu	37	chr8	35425642	35425642	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	aggtccgcgaagtgttcatcAatgttactaggcaacaggtg	12	8	2	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	8	35425642	35425642	A	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.349	p.N117Y	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	268	0	0	184	74	28.68	-	-	-	T	35425642	A	T	35425642	3	4	118	1	0	0	0	0	1	0	0	0	17092	130	5	5	359	5	UNC5D	8	35425642	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09		35425642	110938380	16	7213										
ABCA1	0	genome.wustl.edu	37	chr9	107581011	107581011	+	Frame_Shift_Del	DEL	T	T	-													0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gggaggattccacatctttcTtgaccaaggtcaggtagtag							TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	9	107581011	107581011	T	-	DEL	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	frame_shift_del	c.3395	p.K1132fs	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	123	0	0	103	25	19.53	-	-	-	-	107581011	T	-	107581011	7	5	118	1	0	1	0	1	0	0	0	0	28	1609	56	0	3502	0	ABCA1	9	107581011	Frame_Shift_Del	DEL	T	TCGA-A7-A0CH-01A-21W-A019-09		107581011	33632420	17	7214										
SORCS3	0	genome.wustl.edu	37	chr10	106959855	106959855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	caccaaggaggactatcagaCctggcacctgctcaatcagg	10	13	3	1			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	10	106959855	106959855	C	G	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.2108	p.T703S	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	213	0	0	91	55	37.67	-	-	-	G	106959855	C	G	106959855	3	3	118	1	0	0	0	0	1	0	0	0	15021	507	18	4	2166	4	SORCS3	10	106959855	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		106959855	28574892	18	7215										
RDH16	0	genome.wustl.edu	37	chr12	57348901	57348901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	cttggtgagcaactcattggGagccgtgggcaaggagatgc	16	8	1	2			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	12	57348901	57348901	G	A	SNP	RDH16	ENST00000398138	human	ensembl	69_37n	-1	known	missense	c.361	p.P121S	1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH16	HGNC	ENSG00000139547	40	0	0	38	6	13.64	-	-	-	A	57348901	G	A	57348901	3	1	118	1	0	0	0	0	1	0	0	0	13277	1174	41	2	604	2	RDH16	12	57348901	Missense_Mutation	SNP	G	TCGA-A7-A0CH-01A-21W-A019-09		57348901	76502994	19	7216										
TBX3	0	genome.wustl.edu	37	chr12	115118819	115118820	+	Frame_Shift_Ins	INS	-	-	C													0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gcatttcggggtcggccttaINSccagccaccatccaccgaga							TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	12	115118819	115118820	-	C	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.522_521	p.K175fs	0.995:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	80	0	0	54	30	35.71	-	-	-	C	115118820	-	C	115118819	7	5	118	1	0	1	1	0	0	0	0	0	15754	378	14	0	1737	0	TBX3	12	115118819	Frame_Shift_Ins	INS	-	TCGA-A7-A0CH-01A-21W-A019-09	57769918	115118819	18733076	20	7217										
SLCO3A1	0	genome.wustl.edu	37	chr15	92647538	92647538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	acatcactccggacgaccccCgctggatcggagcctggtgg	13	15	1	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	15	92647538	92647538	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	69_37n	1	known	missense	c.775	p.R259C	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	340	0	0	157	41	20.71	-	-	-	T	92647538	C	T	92647538	3	4	118	1	0	0	0	0	1	0	0	0	14817	652	23	1	789	1	SLCO3A1	15	92647538	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		92647538	9883854	21	7218										
ZNF434	0	genome.wustl.edu	37	chr16	3447282	3447282	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	tccctcacccaggtctggatCtcctctggcaagatagtcag	9	14	5	1			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	16	3447282	3447282	C	G	SNP	ZNF434	ENST00000396846	human	ensembl	69_37n	-1	known	missense	c.276	p.E92D	0.417	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF434	HGNC	ENSG00000140987	9	0	0	11	4	26.67	-	-	-	G	3447282	C	G	3447282	3	3	118	1	0	0	0	0	1	0	0	0	18004	928	32	2		2	ZNF434	16	3447282	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		3447282	86907471	22	7219										
SULT1A4	0	genome.wustl.edu	37	chr16	29472811	29472811	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gggcccctgcagagcttccaAgcccgacctgatgacctgct	11	16	0	3			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-11A-32W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	37	0	0	2	2	50	-	-	-	G	29472811	A	G	29472811	2	3	118	1	0	0	0	0	0	0	0	1	15466	69	3	5		5	SULT1A4	16	29472811	Silent	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09	26025529	29472811	60881942	23	7220										
DSC2	0	genome.wustl.edu	37	chr18	28669470	28669470	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gtttccagtgtctctctccaCataaaataaattccgaggtt	6	10	2	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	18	28669470	28669470	C	A	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.562	p.V188L	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	76	0	0	43	22	33.85	-	-	-	A	28669470	C	A	28669470	3	1	118	1	0	0	0	0	1	0	0	0	4801	478	17	4	2231	4	DSC2	18	28669470	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		28669470	49407778	24	7221										
KANK2	0	genome.wustl.edu	37	chr19	11289393	11289393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	attcggcaggaacttctgggAggcctggagggacaggaaat	16	7	1	0			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-11A-32W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6	19	11289393	11289393	A	G	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.1253	p.L418P	0.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	12	0	0	9	6	40	-	-	-	G	11289393	A	G	11289393	3	3	118	1	0	0	0	0	1	0	0	0	8031	304	11	5	1362	5	KANK2	19	11289393	Missense_Mutation	SNP	A	TCGA-A7-A0CH-01A-21W-A019-09		11289393	47839590	25	7222										
LILRA6	0	genome.wustl.edu	37	chr19	54745682	54745682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	atcccttctgtgagccacatCggagggtcatattcccccct	8	15	2	1			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-11A-32W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6	19	54745682	54745682	C	T	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.428	p.R143Q	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	27	0	0	31	6	16.22	-	-	-	T	54745682	C	T	54745682	3	4	118	1	0	0	0	0	1	0	0	0	8844	884	31	1	1037	1	LILRA6	19	54745682	Missense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09	43456289	54745682	4383301	26	7223										
SMCR7L	0	genome.wustl.edu	37	chr22	39910165	39910165	+	Frame_Shift_Del	DEL	A	A	-													0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	gctggccgaccgtttcctgcAggccttgaggggacttatca							TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	22	39910165	39910165	A	-	DEL	SMCR7L	ENST00000325301	human	ensembl	69_37n	1	known	frame_shift_del	c.1229	p.Q410fs	1.000	NULL	NULL	-	no_errors	SMCR7L	HGNC	ENSG00000100335	40	0	0	77	34	30.36	-	-	-	-	39910165	A	-	39910165	7	5	118	1	0	1	0	1	0	0	0	0	14880	188	7	0	1243	0	SMCR7L	22	39910165	Frame_Shift_Del	DEL	A	TCGA-A7-A0CH-01A-21W-A019-09		39910165	11394401	27	7224										
STAG2	0	genome.wustl.edu	37	chrX	123220476	123220476	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.563863862959083	1.71478873239437	2.28638497652582	1.52425665101721	1	1	0	ggcttccactgatgtcttacCgaaattctttgctagctggt	9	10	2	1			TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	X	123220476	123220476	C	T	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	nonsense	c.3133	p.R1045*	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	276	0	0	159	78	32.77	-	-	-	T	123220476	C	T	123220476	4	4	118	1	0	0	0	0	0	1	0	0	15334	644	23	1	3243	1	STAG2	23	123220476	Nonsense_Mutation	SNP	C	TCGA-A7-A0CH-01A-21W-A019-09		123220476	32050084	28	7225										
PRDM2	0	genome.wustl.edu	37	chr1	14106177	14106177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gatcttcctaaagagcctttGggcagcacaaatagtgaggc	11	9	1	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	14106177	14106177	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	silent	c.1887	p.L629	0.006	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	95	0	0	115	139	54.72	-	-	-	A	14106177	G	A	14106177	2	1	119	1	0	0	0	0	0	0	0	1	12539	1339	47	4		4	PRDM2	1	14106177	Silent	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		14106177	235144444	1	7226										
CCDC30	0	genome.wustl.edu	37	chr1	43032078	43032078	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	actcagctgaaaatgagcttCgatatgaacgagggcagaac	11	8	1	4			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	43032078	43032078	C	T	SNP	CCDC30	ENST00000340612	human	ensembl	69_37n	1	known	nonsense	c.787	p.R263*	0.978	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409	129	0	0	165	69	29.49	-	-	-	T	43032078	C	T	43032078	4	4	119	1	0	0	0	0	0	1	0	0	2831	876	31	1	805	1	CCDC30	1	43032078	Nonsense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	28925901	43032078	206218543	2	7227										
ZNF326	0	genome.wustl.edu	37	chr1	90470614	90470614	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ggaggtctgacattcaaggaTatttatctaaaaattcttct	7	6	5	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	90470614	90470614	T	C	SNP	ZNF326	ENST00000394583	human	ensembl	69_37n	1	known	silent	c.114	p.D38	1.000	NULL	NULL	-	no_errors	ZNF326	HGNC	ENSG00000162664	163	0	0	154	63	29.03	-	-	-	C	90470614	T	C	90470614	2	2	119	1	0	0	0	0	0	0	0	1	17942	1421	49	5		5	ZNF326	1	90470614	Silent	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09	47438536	90470614	158780007	3	7228										
SHISA4	0	genome.wustl.edu	37	chr1	201858587	201858588	+	Frame_Shift_Ins	INS	-	-	T													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	cgcagtgctggccggcgaggINSactgcctgtggtacctggac							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	201858587	201858588	-	T	INS	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	frame_shift_ins	c.88_89	p.D30fs	1.000:1.000	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	23	0	0	16	29	64.44	-	-	-	T	201858588	-	T	201858587	7	5	119	1	0	1	1	0	0	0	0	0	14371	1174	41	0	94	0	SHISA4	1	201858587	Frame_Shift_Ins	INS	-	TCGA-A7-A0CJ-01A-21W-A019-09	111387973	201858587	47392034	4	7229										
TMCC2	0	genome.wustl.edu	37	chr1	205238746	205238746	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	acactcgtctccagccccaaGtatggcagcgatgatgagtg	11	12	1	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	205238746	205238746	G	C	SNP	TMCC2	ENST00000358024	human	ensembl	69_37n	1	known	missense	c.1416	p.K472N	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069	22	0	0	19	5	20.83	-	-	-	C	205238746	G	C	205238746	3	2	119	1	0	0	0	0	1	0	0	0	16088	1020	36	4	1426	4	TMCC2	1	205238746	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	3380159	205238746	44011875	5	7230										
CDK18	0	genome.wustl.edu	37	chr1	205494290	205494290	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gacattggctttgggaaactGgaaacatacgtgaaactgga	12	6	0	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	205494290	205494290	G	T	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.513	p.L171	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	27	0	0	24	7	22.58	-	-	-	T	205494290	G	T	205494290	2	4	119	1	0	0	0	0	0	0	0	1	3163	1335	47	4		4	CDK18	1	205494290	Silent	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	255544	205494290	43756331	6	7231										
NT5C1B	0	genome.wustl.edu	37	chr2	18745290	18745290	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gctgcactcctagctgtaacCaggtaggtcctgataggaca	11	11	0	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	18745290	18745290	C	G	SNP	NT5C1B	ENST00000418427	human	ensembl	69_37n	-1	putative	missense	c.568	p.G190R	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5C1B	HGNC	ENSG00000185013	75	0	0	69	29	29.59	-	-	-	G	18745290	C	G	18745290	3	3	119	1	0	0	0	0	1	0	0	0	10759	581	21	4	231	4	NT5C1B	2	18745290	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		18745290	224454083	7	7232										
CD8B	0	genome.wustl.edu	37	chr2	87085413	87085414	+	Frame_Shift_Ins	INS	-	-	A													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	actgctcggtgcctggcgctINSgtctcagccagtagatgcgc							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	87085413	87085414	-	A	INS	CD8B	ENST00000331469	human	ensembl	69_37n	-1	known	frame_shift_ins	c.170_169	p.Q57fs	0.004:0.031	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8B	HGNC	ENSG00000172116	36	0	0	41	26	38.81	-	-	-	A	87085414	-	A	87085413	7	5	119	1	0	1	1	0	0	0	0	0	3074	1580	55	0	756	0	CD8B	2	87085413	Frame_Shift_Ins	INS	-	TCGA-A7-A0CJ-01A-21W-A019-09	68340123	87085413	156113960	8	7233										
TTN	0	genome.wustl.edu	37	chr2	179597266	179597266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ggtttttactaaatagagttCcagggaactctctaaagctt	8	7	1	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	179597266	179597266	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.12790	p.E4264K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	90	0	0	133	26	16.35	-	-	-	T	179597266	C	T	179597266	3	4	119	1	0	0	0	0	1	0	0	0	16832	864	30	2	88235	2	TTN	2	179597266	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	92511853	179597266	63602107	9	7234										
ZSWIM2	0	genome.wustl.edu	37	chr2	187693402	187693402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tgtttgaaacagactgatgtGcttgtccattcactgctgaa	9	8	1	4			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	187693402	187693402	G	A	SNP	ZSWIM2	ENST00000295131	human	ensembl	69_37n	-1	known	missense	c.1211	p.A404V	0.000	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	58	0	0	105	28	21.05	-	-	-	A	187693402	G	A	187693402	3	1	119	1	0	0	0	0	1	0	0	0	18332	1319	46	4	694	4	ZSWIM2	2	187693402	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	8096136	187693402	55505971	10	7235										
SGOL1	0	genome.wustl.edu	37	chr3	20212538	20212538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	acaaaccaaatacttacgaaGcgagggtgggctccttatag	10	9	0	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	20212538	20212538	G	A	SNP	SGOL1	ENST00000263753	human	ensembl	69_37n	-1	known	missense	c.1469	p.A490V	0.023	pfam_Shugoshin_C	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810	82	0	0	38	25	39.68	-	-	-	A	20212538	G	A	20212538	3	1	119	1	0	0	0	0	1	0	0	0	14304	971	34	4	248	4	SGOL1	3	20212538	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		20212538	177809892	11	7236										
CADM2	0	genome.wustl.edu	37	chr3	85935421	85935421	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gcagctgacttgcaaaacatCtggtagtaaacctgcagctg	10	10	1	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	85935421	85935421	C	G	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.452	p.S151C	0.996	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Ig_C1-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	64	0	0	81	42	34.15	-	-	-	G	85935421	C	G	85935421	3	3	119	1	0	0	0	0	1	0	0	0	2592	913	32	2	531	2	CADM2	3	85935421	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	65722883	85935421	112087009	12	7237										
CBLB	0	genome.wustl.edu	37	chr3	105495384	105495384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gggacagttttgtgagatttCgtctgtaggcacaagggaaa	14	5	1	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	105495384	105495384	C	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.422	p.R141Q	1.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	193	0	0	460	58	11.18	-	-	-	T	105495384	C	T	105495384	3	4	119	1	0	0	0	0	1	0	0	0	2726	884	31	1	2590	1	CBLB	3	105495384	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	19559963	105495384	92527046	13	7238										
POLQ	0	genome.wustl.edu	37	chr3	121151152	121151152	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gacttcatcaacagcacagtTacacatcaaagtcctttagc	5	12	3	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	121151152	121151152	T	G	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	nonstop	c.7772	p.*2591S	0.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	82	0	0	79	71	47.33	-	-	-	G	121151152	T	G	121151152	4	3	119	1	0	0	0	0	0	0	0	0	12282	1761	61	5	4	5	POLQ	3	121151152	Nonstop_Mutation	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09	15655768	121151152	76871278	14	7239										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	74	0	0	85	79	48.17	-	-	-	G	178936095	A	G	178936095	3	3	119	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-A7-A0CJ-01A-21W-A019-09	57784943	178936095	19086335	15	7240										
PPARGC1B	0	genome.wustl.edu	37	chr5	149226989	149226989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	taagttgctcactgccttccCctcttccctgcctcttcacc	4	19	4	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	5	149226989	149226989	C	T	SNP	PPARGC1B	ENST00000434684	human	ensembl	69_37n	1	putative	missense	c.2165	p.P722L	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPARGC1B	HGNC	ENSG00000155846	101	0	0	40	149	78.84	-	-	-	T	149226989	C	T	149226989	3	4	119	1	0	0	0	0	1	0	0	0	12374	638	22	4		4	PPARGC1B	5	149226989	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		149226989	31688271	16	7241										
C5orf25	0	genome.wustl.edu	37	chr5	175717932	175717932	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	atcacctcttctttcagacgCtaataccggataaagacaca	5	12	4	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	5	175717932	175717932	C	G	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.1348	p.L450V	0.656	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	63	0	0	250	74	22.84	-	-	-	G	175717932	C	G	175717932	3	3	119	1	0	0	0	0	1	0	0	0	2309	812	28	4		4	C5orf25	5	175717932	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	26490943	175717932	5197328	17	7242										
AGPAT1	0	genome.wustl.edu	37	chr6	32138201	32138201	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	catttccccaggatgactcaCgtcctgggtgagcagggtct	12	12	2	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	6	32138201	32138201	C	T	SNP	AGPAT1	ENST00000336984	human	ensembl	69_37n	-1	known	splice_site	c.510+1	e3+1	1.000	-	-	-	no_errors	AGPAT1	HGNC	ENSG00000204310	56	0	0	76	23	23.23	-	-	-	T	32138201	C	T	32138201	5	4	119	1	0	0	0	0	0	0	1	0	386	550	19	1	356	1	AGPAT1	6	32138201	Splice_Site	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		32138201	138976866	18	7243										
TUBE1	0	genome.wustl.edu	37	chr6	112397208	112397208	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	aagggcttcttatgctgcttTtttaaagccccagaacttga	8	9	1	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	6	112397208	112397208	T	C	SNP	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	silent	c.744	p.K248	0.023	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	151	0	0	121	46	27.54	-	-	-	C	112397208	T	C	112397208	2	2	119	1	0	0	0	0	0	0	0	1	16860	1838	64	5		5	TUBE1	6	112397208	Silent	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09	80259007	112397208	58717859	19	7244										
HOXA2	0	genome.wustl.edu	37	chr7	27140422	27140422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gctgtcagctgaaatatctaCgggactgtcgagggaacctg	13	9	2	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	7	27140422	27140422	C	T	SNP	HOXA2	ENST00000222718	human	ensembl	69_37n	-1	known	missense	c.1054	p.V352I	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996	135	0	0	88	21	19.27	-	-	-	T	27140422	C	T	27140422	3	4	119	1	0	0	0	0	1	0	0	0	7343	536	19	1	80	1	HOXA2	7	27140422	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		27140422	131998241	20	7245										
FAM3C	0	genome.wustl.edu	37	chr7	121011389	121011389	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	cagattttgggtcccaccacGttggctgctccacttgccat	9	14	0	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	7	121011389	121011389	G	A	SNP	FAM3C	ENST00000359943	human	ensembl	69_37n	-1	known	silent	c.237	p.N79	1.000	NULL	NULL	-	no_errors	FAM3C	HGNC	ENSG00000196937	125	0	0	155	50	24.39	-	-	-	A	121011389	G	A	121011389	2	1	119	1	0	0	0	0	0	0	0	1	5604	1136	40	1		1	FAM3C	7	121011389	Silent	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	93870967	121011389	38127274	21	7246										
SLCO5A1	0	genome.wustl.edu	37	chr8	70744434	70744434	+	Frame_Shift_Del	DEL	G	G	-													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ggaactcttcagactgtagcGcctttcaatggtggtaatta							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	8	70744434	70744434	G	-	DEL	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	frame_shift_del	c.475	p.R159fs	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	50	0	0	51	225	80.36	-	-	-	-	70744434	G	-	70744434	7	5	119	1	0	1	0	1	0	0	0	0	14820	1087	38	0	2107	0	SLCO5A1	8	70744434	Frame_Shift_Del	DEL	G	TCGA-A7-A0CJ-01A-21W-A019-09		70744434	75619588	22	7247										
RCL1	0	genome.wustl.edu	37	chr9	4841274	4841274	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	cagatggcgaaccggattgtGgattctgcaaggagcatcct	13	9	1	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	9	4841274	4841274	G	T	SNP	RCL1	ENST00000381750	human	ensembl	69_37n	1	known	silent	c.627	p.V209	1.000	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'_term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,pirsf_RNA3'_term_phos_cyc,tigrfam_RNA3'_term_phos_cyc_type_2	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'_term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,pirsf_RNA3'_term_phos_cyc,tigrfam_RNA3'_term_phos_cyc_type_2	-	no_errors	RCL1	HGNC	ENSG00000120158	240	0	0	94	198	67.81	-	-	-	T	4841274	G	T	4841274	2	4	119	1	0	0	0	0	0	0	0	1	13261	1335	47	4		4	RCL1	9	4841274	Silent	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		4841274	136372157	23	7248										
C9orf131	0	genome.wustl.edu	37	chr9	35044467	35044467	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	accccaagacctgcatggagCcagccctctgggagtcttgt	11	14	2	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	9	35044467	35044467	C	A	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.1841	p.A614D	0.001	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	446	0	0	103	293	73.62	-	-	-	A	35044467	C	A	35044467	3	1	119	1	0	0	0	0	1	0	0	0	2482	739	26	4	1863	4	C9orf131	9	35044467	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	30203193	35044467	106168964	24	7249										
DIP2C	0	genome.wustl.edu	37	chr10	327200	327200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	caatgtcgattgggtggtacCgcatgccccgcagctccatg	12	13	0	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	10	327200	327200	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.4358	p.R1453Q	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	51	0	0	21	11	34.38	-	-	-	T	327200	C	T	327200	3	4	119	1	0	0	0	0	1	0	0	0	4565	652	23	1	320	1	DIP2C	10	327200	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		327200	135207547	25	7250										
OR10A4	0	genome.wustl.edu	37	chr11	6898202	6898202	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	atgtatttcttcttctttttTggggctgctgagtgctgcct	10	8	3	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	11	6898202	6898202	T	G	SNP	OR10A4	ENST00000379829	human	ensembl	69_37n	1	known	missense	c.324	p.F108L	0.950	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10A4	HGNC	ENSG00000170782	220	0	0	283	225	44.29	-	-	-	G	6898202	T	G	6898202	3	3	119	1	0	0	0	0	1	0	0	0	10965	1809	63	5	326	5	OR10A4	11	6898202	Missense_Mutation	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09		6898202	128108314	26	7251										
ZBTB39	0	genome.wustl.edu	37	chr12	57397309	57397309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gatgtggccccggaccacatGgaaatctttggccaatactt	10	11	1	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	12	57397309	57397309	G	A	SNP	ZBTB39	ENST00000300101	human	ensembl	69_37n	-1	known	missense	c.1393	p.H465Y	1.000	smart_Znf_C2H2-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860	63	0	0	20	14	41.18	-	-	-	A	57397309	G	A	57397309	3	1	119	1	0	0	0	0	1	0	0	0	17636	1348	47	4	749	4	ZBTB39	12	57397309	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		57397309	76454586	27	7252										
ACOT2	0	genome.wustl.edu	37	chr14	74042019	74042019	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ccccagatcatctgttacccAgagacagggcactatattga	8	12	2	3			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	14	74042019	74042019	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	silent	c.1254	p.P418	0.010	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	93	0	0	133	20	13.07	-	-	-	G	74042019	A	G	74042019	2	3	119	1	0	0	0	0	0	0	0	1	152	175	7	5		5	ACOT2	14	74042019	Silent	SNP	A	TCGA-A7-A0CJ-01A-21W-A019-09		74042019	33307521	28	7253										
TMEM219	0	genome.wustl.edu	37	chr16	29979452	29979452	+	Missense_Mutation	SNP	C	C	A													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ccaggaatcctaccctccagCcagccacccatatcctgctc							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	16	29979452	29979452	C	A	SNP	TMEM219	ENST00000279396	human	ensembl	69_37n	1	known	missense	c.462	p.S154R	1.000	NULL	NULL	-	no_errors	TMEM219	HGNC	ENSG00000149932	87	0	0	43	15	25.86	-	-	-	A	29979452	C	A	29979452	3	1	119	1	0	0	0	0	1	0	0	0	16237	738	26	4	472	4	TMEM219	16	29979452	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		29979452	60375301	29	7254	58	2								
TMEM219	0	genome.wustl.edu	37	chr16	29979453	29979453	+	Missense_Mutation	SNP	C	C	G													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	caggaatcctaccctccagcCagccacccatatcctgctca							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	16	29979453	29979453	C	G	SNP	TMEM219	ENST00000279396	human	ensembl	69_37n	1	known	missense	c.463	p.Q155E	1.000	NULL	NULL	-	no_errors	TMEM219	HGNC	ENSG00000149932	88	0	0	42	15	26.32	-	-	-	G	29979453	C	G	29979453	3	3	119	1	0	0	0	0	1	0	0	0	16237	595	21	4	473	4	TMEM219	16	29979453	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	1	29979453	60375300	30	7255	58	2								
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	42	0	0	20	61	75.31	-	-	-	T	7578406	C	T	7578406	3	4	119	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09		7578406	73616804	31	7256										
MYO15A	0	genome.wustl.edu	37	chr17	18044985	18044985	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	aggtactgctgtctagtggcCctcaagcatgacctgccggc	12	13	2	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	17	18044985	18044985	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	silent	c.5550	p.A1850	0.984	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	33	0	0	17	8	32	-	-	-	T	18044985	C	T	18044985	2	4	119	1	0	0	0	0	0	0	0	1	10135	610	22	4		4	MYO15A	17	18044985	Silent	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	10466579	18044985	63150225	32	7257										
DSG4	0	genome.wustl.edu	37	chr18	28979503	28979503	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	aggaaaccctgcaacagatgTcaggtactgcaactattttc	8	10	1	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	18	28979503	28979503	T	A	SNP	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	missense	c.1274	p.V425D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	115	0	0	268	87	24.51	-	-	-	A	28979503	T	A	28979503	3	1	119	1	0	0	0	0	1	0	0	0	4814	1667	58	5	1308	5	DSG4	18	28979503	Missense_Mutation	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09		28979503	49097745	33	7258										
ATP8B1	0	genome.wustl.edu	37	chr18	55328529	55328529	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gacgcggcagcagatgactgCgctgcactcgcaggccaggt	15	13	0	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	18	55328529	55328529	C	A	SNP	ATP8B1	ENST00000283684	human	ensembl	69_37n	-1	known	missense	c.2584	p.A862S	1.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B1	HGNC	ENSG00000081923	65	0	0	218	28	11.38	-	-	-	A	55328529	C	A	55328529	3	1	119	1	0	0	0	0	1	0	0	0	1198	768	27	3	1199	3	ATP8B1	18	55328529	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	26349026	55328529	22748719	34	7259										
MUC16	0	genome.wustl.edu	37	chr19	9070608	9070608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tccatgacacatctccagggGttctgctccgaagagtggtt	11	11	2	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	9070608	9070608	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16838	p.T5613I	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	177	0	0	455	123	21.28	-	-	-	A	9070608	G	A	9070608	3	1	119	1	0	0	0	0	1	0	0	0	10045	1261	44	4	27013	4	MUC16	19	9070608	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		9070608	50058375	35	7260										
LSM14A	0	genome.wustl.edu	37	chr19	34699901	34699901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	accttaccccaaagtagtgcGgttggttctgcctttacaca	8	12	1	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	34699901	34699901	G	A	SNP	LSM14A	ENST00000433627	human	ensembl	69_37n	1	known	silent	c.483	p.A161	0.996	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14A	HGNC	ENSG00000257103	64	0	0	91	35	27.78	-	-	-	A	34699901	G	A	34699901	2	1	119	1	0	0	0	0	0	0	0	1	9120	1103	39	1		1	LSM14A	19	34699901	Silent	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	25629293	34699901	24429082	36	7261										
ACTN4	0	genome.wustl.edu	37	chr19	39196735	39196735	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gtgccagagaaagacagcccCgtataagaacgtcaatgtgc	11	10	1	3			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	39196735	39196735	C	G	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	missense	c.536	p.P179R	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	36	0	0	21	8	27.59	-	-	-	G	39196735	C	G	39196735	3	3	119	1	0	0	0	0	1	0	0	0	207	652	23	3	554	3	ACTN4	19	39196735	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	4496834	39196735	19932248	37	7262										
PRKD2	0	genome.wustl.edu	37	chr19	47193909	47193909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tctcctgcttggtagggaagCgcagtttgtcaatgacctta	11	9	2	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	47193909	47193909	C	T	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1757	p.R586H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	34	0	0	38	11	22.45	-	-	-	T	47193909	C	T	47193909	3	4	119	1	0	0	0	0	1	0	0	0	12600	768	27	1	903	1	PRKD2	19	47193909	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	7997174	47193909	11935074	38	7263										
SIGLEC1	0	genome.wustl.edu	37	chr20	3687076	3687077	+	Frame_Shift_Ins	INS	-	-	C													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	ggaagttgtaggaaccagagINStcctcgggctgcaggtcctt							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	3687076	3687077	-	C	INS	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.327_326	p.D109fs	0.724:0.890	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	10	0	0	53	35	39.77	-	-	-	C	3687077	-	C	3687076	7	5	119	1	0	1	1	0	0	0	0	0	14394	1020	36	0	4882	0	SIGLEC1	20	3687076	Frame_Shift_Ins	INS	-	TCGA-A7-A0CJ-01A-21W-A019-09		3687076	59338444	39	7264										
C20orf160	0	genome.wustl.edu	37	chr20	30605793	30605793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tccctgcagcagctgaaggaGctgccgctgaagaccacggc	13	14	0	3			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	30605793	30605793	G	T	SNP	C20orf160	ENST00000300415	human	ensembl	69_37n	1	known	missense	c.294	p.E98D	1.000	NULL	NULL	-	no_errors	C20orf160	HGNC	ENSG00000101331	34	0	0	39	14	26.42	-	-	-	T	30605793	G	T	30605793	3	4	119	1	0	0	0	0	1	0	0	0	2113	962	34	4	308	4	C20orf160	20	30605793	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	26918717	30605793	32419727	40	7265										
FAM83C	0	genome.wustl.edu	37	chr20	33875143	33875143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tgccaggtacccatcgacccCgcagggggctgggctcttgg	15	14	1	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	33875143	33875143	C	T	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	missense	c.1439	p.R480Q	0.003	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	24	0	0	29	12	29.27	-	-	-	T	33875143	C	T	33875143	3	4	119	1	0	0	0	0	1	0	0	0	5680	652	23	1	808	1	FAM83C	20	33875143	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	3269350	33875143	29150377	41	7266										
CHD6	0	genome.wustl.edu	37	chr20	40161841	40161841	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tccttggccttcttcggctcCttggcctttctgggttcctt	9	14	2	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	40161841	40161841	C	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.402	p.K134N	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	244	0	0	515	76	12.86	-	-	-	A	40161841	C	A	40161841	3	1	119	1	0	0	0	0	1	0	0	0	3358	680	24	4	7885	4	CHD6	20	40161841	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	6286698	40161841	22863679	42	7267										
ZFP64	0	genome.wustl.edu	37	chr20	50769369	50769369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	agaacggtcacgtccgagttCttactctcactgtactcact	7	13	4	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	50769369	50769369	C	G	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1362	p.K454N	0.043	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	51	0	0	74	48	39.34	-	-	-	G	50769369	C	G	50769369	3	3	119	1	0	0	0	0	1	0	0	0	17748	912	32	2	1878	2	ZFP64	20	50769369	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	10607528	50769369	12256151	43	7268										
STX16	0	genome.wustl.edu	37	chr20	57242358	57242358	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	aatcctagcagttatcaaaaGcaagtttataatacaggcaa	6	7	1	0			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	57242358	57242358	G	C	SNP	STX16	ENST00000361770	human	ensembl	69_37n	1	known	splice_site	c.93+1	e2+1	0.006	-	-	-	no_errors	STX16	HGNC	ENSG00000124222	13	0	0	5	11	68.75	-	-	-	C	57242358	G	C	57242358	5	2	119	1	0	0	0	0	0	0	1	0	15430	986	34	4		4	STX16	20	57242358	Splice_Site	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09	6472989	57242358	5783162	44	7269										
SGSM3	0	genome.wustl.edu	37	chr22	40804998	40804998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	acaaatggatgtgaagctccGctcactgatctgcgtggggc	13	10	2	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	22	40804998	40804998	G	A	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	missense	c.1964	p.R655H	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	13	0	0	9	5	35.71	-	-	-	A	40804998	G	A	40804998	3	1	119	1	0	0	0	0	1	0	0	0	14312	1087	38	1	2034	1	SGSM3	22	40804998	Missense_Mutation	SNP	G	TCGA-A7-A0CJ-01A-21W-A019-09		40804998	10499568	45	7270										
GPR34	0	genome.wustl.edu	37	chrX	41555293	41555293	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	tgtgggaacactgttttataTgaacatgtacattagcatta	8	5	0	1			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	41555293	41555293	T	A	SNP	GPR34	ENST00000378138	human	ensembl	69_37n	1	known	missense	c.407	p.M136K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR34	HGNC	ENSG00000171659	235	0	0	142	71	33.33	-	-	-	A	41555293	T	A	41555293	3	1	119	1	0	0	0	0	1	0	0	0	6739	1464	51	5	409	5	GPR34	23	41555293	Missense_Mutation	SNP	T	TCGA-A7-A0CJ-01A-21W-A019-09		41555293	113715267	46	7271										
TRO	0	genome.wustl.edu	37	chrX	54955461	54955461	+	Frame_Shift_Del	DEL	C	C	-													0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gcacccagcaccagtgccagCttcagcaatacagccagcat							TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	54955461	54955461	C	-	DEL	TRO	ENST00000173898	human	ensembl	69_37n	1	known	frame_shift_del	c.2304	p.F769fs	0.934	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	89	0	0	39	14	26.42	-	-	-	-	54955461	C	-	54955461	7	5	119	1	0	1	0	1	0	0	0	0	16670	796	28	0	2346	0	TRO	23	54955461	Frame_Shift_Del	DEL	C	TCGA-A7-A0CJ-01A-21W-A019-09	13400168	54955461	100315099	47	7272										
ARHGAP36	0	genome.wustl.edu	37	chrX	130219619	130219619	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	2	1	0.548804137039431	2.03841536614646	0	0.333333333333333	0.930327025915261	0	gctggtctacctgatgccacCctgccacagtgataccctgg	10	15	1	2			TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	130219619	130219619	C	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1013	p.P338H	0.984	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	709	0	0	140	434	75.61	-	-	-	A	130219619	C	A	130219619	3	1	119	1	0	0	0	0	1	0	0	0	885	623	22	4	1039	4	ARHGAP36	23	130219619	Missense_Mutation	SNP	C	TCGA-A7-A0CJ-01A-21W-A019-09	75264158	130219619	25050941	48	7273										
RPL5	0	genome.wustl.edu	37	chr1	93300436	93300436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tggcctgacaaattatgctgCagcatattgtactggcctgc	10	10	0	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	1	93300436	93300436	C	G	SNP	RPL5	ENST00000370321	human	ensembl	69_37n	1	known	missense	c.290	p.A97G	1.000	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	-	no_errors	RPL5	HGNC	ENSG00000122406	134	0	0	89	50	35.97	-	-	-	G	93300436	C	G	93300436	3	3	120	1	0	0	0	0	1	0	0	0	13683	710	25	4	304	4	RPL5	1	93300436	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09		93300436	155950185	1	7274										
ZRANB3	0	genome.wustl.edu	37	chr2	135966549	135966549	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	catcttctttggttatgtatCtaaaacaatgatatgttaaa	5	5	3	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	2	135966549	135966549	C	A	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	splice_site	c.2496-1	e17-1	1.000	-	-	-	no_errors	ZRANB3	HGNC	ENSG00000121988	62	0	0	46	30	39.47	-	-	-	A	135966549	C	A	135966549	5	1	120	1	0	0	0	0	0	0	1	0	18317	927	32	2	760	2	ZRANB3	2	135966549	Splice_Site	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09		135966549	107232824	2	7275										
ZPLD1	0	genome.wustl.edu	37	chr3	102196287	102196287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	gtgtgttttattatttgcagGttctccaagtatgcctccct	8	9	1	0			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	3	102196287	102196287	G	A	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	missense	c.1121	p.G374D	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	353	0	0	272	153	35.92	-	-	-	A	102196287	G	A	102196287	3	1	120	1	0	0	0	0	1	0	0	0	18314	1275	44	4	1163	4	ZPLD1	3	102196287	Missense_Mutation	SNP	G	TCGA-A7-A0D9-01A-31W-A071-09		102196287	95826143	3	7276										
PIK3CA	0	genome.wustl.edu	37	chr3	178921552	178921552	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tctttgtgcaacctacgtgaAtgtaaatattcgagacattg	8	7	1	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	3	178921552	178921552	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1034	p.N345T	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	118	0	0	60	36	37.5	-	-	-	C	178921552	A	C	178921552	3	2	120	1	0	0	0	0	1	0	0	0	11987	101	4	5	1048	5	PIK3CA	3	178921552	Missense_Mutation	SNP	A	TCGA-A7-A0D9-01A-31W-A071-09	76725265	178921552	19100878	4	7277										
IDUA	0	genome.wustl.edu	37	chr4	997898	997899	+	Frame_Shift_Ins	INS	-	-	CT													0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	aacctctttgtgttcagcccINSaggtgcgcccaccacccgct							TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	4	997898	997899	-	CT	INS	IDUA	ENST00000453894	human	ensembl	69_37n	1	known	frame_shift_ins	c.1892_1893	p.D632fs	1.000:1.000	superfamily_Fibronectin_type3	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415	20	0	0	14	7	33.33	-	-	-	CT	997899	-	CT	997898	7	5	120	1	0	1	1	0	0	0	0	0	7558	594	21	0	1876	0	IDUA	4	997898	Frame_Shift_Ins	INS	-	TCGA-A7-A0D9-01A-31W-A071-09		997898	190156378	5	7278										
PCDHB13	0	genome.wustl.edu	37	chr5	140595229	140595229	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ccatcaacgcggacaacggcCacctgttcgccctcaggtct	9	17	3	0			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	5	140595229	140595229	C	A	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	missense	c.1534	p.H512N	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	197	0	0	243	66	21.36	-	-	-	A	140595229	C	A	140595229	3	1	120	1	0	0	0	0	1	0	0	0	11611	594	21	4	1536	4	PCDHB13	5	140595229	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09		140595229	40320031	6	7279										
LRRN3	0	genome.wustl.edu	37	chr7	110762901	110762901	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	cactagtacaagctgtagatAaaaaagtggattgtccacgg	10	7	0	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	7	110762901	110762901	A	T	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	nonsense	c.73	p.K25*	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	283	0	0	237	77	24.52	-	-	-	T	110762901	A	T	110762901	4	4	120	1	0	0	0	0	0	1	0	0	9102	363	13	5	75	5	LRRN3	7	110762901	Nonsense_Mutation	SNP	A	TCGA-A7-A0D9-01A-31W-A071-09		110762901	48375762	7	7280										
CSMD1	0	genome.wustl.edu	37	chr8	3165943	3165943	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ttgcaactgtacagaactacAgtgtcggtaaagtggccttc	10	9	0	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	8	3165943	3165943	A	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.2155	p.C719S	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	54	0	0	20	18	47.37	-	-	-	T	3165943	A	T	3165943	3	4	120	1	0	0	0	0	1	0	0	0	3976	175	7	5	7168	5	CSMD1	8	3165943	Missense_Mutation	SNP	A	TCGA-A7-A0D9-01A-31W-A071-09		3165943	143198079	8	7281										
UBR5	0	genome.wustl.edu	37	chr8	103335715	103335715	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tgataaagaggattatttctCaagcatacctagcaaacaaa	6	7	1	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	8	103335715	103335715	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.1608	p.L536F	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	149	0	0	162	47	22.38	-	-	-	A	103335715	C	A	103335715	3	1	120	1	0	0	0	0	1	0	0	0	17002	825	29	2	6975	2	UBR5	8	103335715	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09	100169772	103335715	43028307	9	7282										
RET	0	genome.wustl.edu	37	chr10	43601945	43601945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctgggcccagcagaccttccGggtggaacactggcccaacg	13	15	0	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	10	43601945	43601945	G	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.989	p.R330Q	0.974	pirsf_Tyr_kinase_Ret_rcpt,superfamily_Cadherin-like	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	14	0	0	7	6	46.15	-	-	-	A	43601945	G	A	43601945	3	1	120	1	0	0	0	0	1	0	0	0	13318	1116	39	1	1007	1	RET	10	43601945	Missense_Mutation	SNP	G	TCGA-A7-A0D9-01A-31W-A071-09		43601945	91932802	10	7283										
MAPK8	0	genome.wustl.edu	37	chr10	49609776	49609776	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctacattcacagtcctgaaaCgatatcagaatttaaaacct	4	10	2	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	10	49609776	49609776	C	T	SNP	MAPK8	ENST00000360332	human	ensembl	69_37n	1	known	nonsense	c.73	p.R25*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK8	HGNC	ENSG00000107643	98	0	0	36	27	42.86	-	-	-	T	49609776	C	T	49609776	4	4	120	1	0	0	0	0	0	1	0	0	9354	528	19	1	75	1	MAPK8	10	49609776	Nonsense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09	6007831	49609776	85924971	11	7284										
IFIT1B	0	genome.wustl.edu	37	chr10	91143442	91143442	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctggacaaggtggagaacacTtgcaagaagtttgcaaatcc	11	8	0	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	10	91143442	91143442	T	C	SNP	IFIT1B	ENST00000371809	human	ensembl	69_37n	1	known	silent	c.372	p.T124	0.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1B	HGNC	ENSG00000204010	356	0	0	103	55	34.81	-	-	-	C	91143442	T	C	91143442	2	2	120	1	0	0	0	0	0	0	0	1	7576	1596	56	5		5	IFIT1B	10	91143442	Silent	SNP	T	TCGA-A7-A0D9-01A-31W-A071-09	41533666	91143442	44391305	12	7285										
MRPL21	0	genome.wustl.edu	37	chr11	68671254	68671255	+	Frame_Shift_Ins	INS	-	-	A													0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	gacgccagccgccctaaggtINSgaccgtcagggaagatgctg							TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-11A-53W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f539c3f0-3eb3-4279-8979-d81cb7db8e58	11	68671254	68671255	-	A	INS	MRPL21	ENST00000362034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.25_24	p.T8fs	0.001:0.011	NULL	pfam_Ribosomal_L21,tigrfam_Ribosomal_L21	-	no_errors	MRPL21	HGNC	ENSG00000197345	13	0	0	15	11	42.31	-	-	-	A	68671255	-	A	68671254	7	5	120	1	0	1	1	0	0	0	0	0	9859	1696	59	0	620	0	MRPL21	11	68671254	Frame_Shift_Ins	INS	-	TCGA-A7-A0D9-01A-31W-A071-09		68671254	66335262	13	7286										
ERC1	0	genome.wustl.edu	37	chr12	1553842	1553842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tgatcctccgtggactcactCcaccagcttcctataacttg	6	15	1	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	12	1553842	1553842	C	T	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.3139	p.P1047S	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	84	0	0	99	15	13.16	-	-	-	T	1553842	C	T	1553842	3	4	120	1	0	0	0	0	1	0	0	0	5247	855	30	2	3205	2	ERC1	12	1553842	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09		1553842	132298053	14	7287										
SLCO1B1	0	genome.wustl.edu	37	chr12	21329823	21329823	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tagagcatcacctgagatagTgggaaaaggtaagaattaat	11	4	1	3			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	12	21329823	21329823	T	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	69_37n	1	known	missense	c.473	p.V158A	0.002	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	197	0	0	112	72	39.13	-	-	-	C	21329823	T	C	21329823	3	2	120	1	0	0	0	0	1	0	0	0	14812	1696	59	5	487	5	SLCO1B1	12	21329823	Missense_Mutation	SNP	T	TCGA-A7-A0D9-01A-31W-A071-09	19775981	21329823	112522072	15	7288										
KLHL1	0	genome.wustl.edu	37	chr13	70514225	70514225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	aatgcatccttgagcatctgCgaaggctcgaattcctaaac	8	11	1	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	13	70514225	70514225	C	T	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.961	p.A321T	1.000	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	66	0	0	54	23	29.87	-	-	-	T	70514225	C	T	70514225	3	4	120	1	0	0	0	0	1	0	0	0	8418	768	27	1	1317	1	KLHL1	13	70514225	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09		70514225	44655653	16	7289										
PFAS	0	genome.wustl.edu	37	chr17	8158827	8158828	+	Frame_Shift_Ins	INS	-	-	C													0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctgcacccctagtttgcccaINSccccccgtcagctgaggtgg							TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	17	8158827	8158828	-	C	INS	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	frame_shift_ins	c.392_393	p.S134fs	0.177:0.018	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	24	0	0	23	3	11.54	-	-	-	C	8158828	-	C	8158827	7	5	120	1	0	1	1	0	0	0	0	0	11828	159	6	0	406	0	PFAS	17	8158827	Frame_Shift_Ins	INS	-	TCGA-A7-A0D9-01A-31W-A071-09		8158827	73036383	17	7290										
MMD	0	genome.wustl.edu	37	chr17	53488766	53488766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ggcactgcccacgatggccgGaacaatgaggaactgaggga	15	10	0	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	17	53488766	53488766	G	A	SNP	MMD	ENST00000262065	human	ensembl	69_37n	-1	known	missense	c.121	p.P41S	1.000	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960	87	0	0	49	18	26.87	-	-	-	A	53488766	G	A	53488766	3	1	120	1	0	0	0	0	1	0	0	0	9714	1174	41	2	615	2	MMD	17	53488766	Missense_Mutation	SNP	G	TCGA-A7-A0D9-01A-31W-A071-09	45329939	53488766	27706444	18	7291										
PRR11	0	genome.wustl.edu	37	chr17	57262856	57262856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	tcgtatctgccaccgagaacTttacagtgtaaaacaacagt	7	10	1	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	17	57262856	57262856	T	C	SNP	PRR11	ENST00000262293	human	ensembl	69_37n	1	known	missense	c.335	p.L112P	0.885	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489	128	0	0	183	30	14.08	-	-	-	C	57262856	T	C	57262856	3	2	120	1	0	0	0	0	1	0	0	0	12664	1609	56	5	345	5	PRR11	17	57262856	Missense_Mutation	SNP	T	TCGA-A7-A0D9-01A-31W-A071-09	3774090	57262856	23932354	19	7292										
ARFGEF2	0	genome.wustl.edu	37	chr20	47569307	47569307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ggtactatcctgcagacagtGagaacatgttacaatatcta	8	8	1	2			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	20	47569307	47569307	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	silent	c.489	p.V163	0.997	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	158	0	0	239	366	60.5	-	-	-	A	47569307	G	A	47569307	2	1	120	1	0	0	0	0	0	0	0	1	855	1277	45	2		2	ARFGEF2	20	47569307	Silent	SNP	G	TCGA-A7-A0D9-01A-31W-A071-09		47569307	15456213	20	7293										
DIDO1	0	genome.wustl.edu	37	chr20	61542268	61542268	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctccaacttactctctctgtCatctttcccagcctgggaca	5	16	4	0			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-11A-53W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f539c3f0-3eb3-4279-8979-d81cb7db8e58	20	61542268	61542268	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.697	p.D233N	0.004	superfamily_Znf_FYVE_PHD	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	90	0	0	117	24	17.02	-	-	-	T	61542268	C	T	61542268	3	4	120	1	0	0	0	0	1	0	0	0	4558	826	29	2	6211	2	DIDO1	20	61542268	Missense_Mutation	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09	13972961	61542268	1483252	21	7294										
DIDO1	0	genome.wustl.edu	37	chr20	61542482	61542482	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	aggcgattctgaagctctttCaaggtcaggccatcgctgtc	11	11	4	1			TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	20	61542482	61542482	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.483	p.L161	0.993	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	22	0	0	90	19	17.43	-	-	-	T	61542482	C	T	61542482	2	4	120	1	0	0	0	0	0	0	0	1	4558	825	29	2		2	DIDO1	20	61542482	Silent	SNP	C	TCGA-A7-A0D9-01A-31W-A071-09	214	61542482	1483038	22	7295										
WDR13	0	genome.wustl.edu	37	chrX	48457777	48457777	+	Frame_Shift_Del	DEL	G	G	-													0.130434782608696	3	0.406819229316526	2.2125	0	2.45833333333333	0.166666666666667	0.696581196581198	0	ctcgggccctgggggcccgtGggcaccgtcgttctgtcagc							TCGA-A7-A0D9-01A-31W-A071-09	TCGA-A7-A0D9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c730a631-f3d0-4d7d-945a-b65c7a5a4d58	f671adda-19b8-4329-85a0-e25c344a92db	X	48457777	48457777	G	-	DEL	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	frame_shift_del	c.319	p.H108fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	29	0	0	9	3	23.08	-	-	-	-	48457777	G	-	48457777	7	5	120	1	0	1	0	1	0	0	0	0	17372	1348	47	0	329	0	WDR13	23	48457777	Frame_Shift_Del	DEL	G	TCGA-A7-A0D9-01A-31W-A071-09		48457777	106812783	23	7296										
DVL1	0	genome.wustl.edu	37	chr1	1273446	1273446	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agcagggtgggggtcccgggTactggtaggggtagccctga	20	8	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	1273446	1273446	T	A	SNP	DVL1	ENST00000378888	human	ensembl	69_37n	-1	known	missense	c.1625	p.Y542F	1.000	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_1,prints_Dishevelled	-	no_errors	DVL1	HGNC	ENSG00000107404	27	0	0	12	8	38.1	-	-	-	A	1273446	T	A	1273446	3	1	121	1	0	0	0	0	1	0	0	0	4870	1638	57	5	470	5	DVL1	1	1273446	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09		1273446	247977175	1	7297										
PIK3CD	0	genome.wustl.edu	37	chr1	9777151	9777151	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccgcgtgccaaaccacctccCattcctgcgaagaaggtgag	10	15	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	9777151	9777151	C	G	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	silent	c.810	p.P270	0.315	smart_PI3K_Ras-bd_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	140	0	0	92	34	26.98	-	-	-	G	9777151	C	G	9777151	2	3	121	1	0	0	0	0	0	0	0	1	11989	581	21	4		4	PIK3CD	1	9777151	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	8503705	9777151	239473470	2	7298										
PLA2G2C	0	genome.wustl.edu	37	chr1	20501650	20501650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gggtgggggctgccaccaccGatgagaaaaaaaggaagaag	16	7	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	20501650	20501650	G	A	SNP	PLA2G2C	ENST00000247992	human	ensembl	69_37n	-1	known	missense	c.38	p.S13L	0.000	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2C	HGNC	ENSG00000187980	189	0	0	200	62	23.57	-	-	-	A	20501650	G	A	20501650	3	1	121	1	0	0	0	0	1	0	0	0	12070	1059	37	1	426	1	PLA2G2C	1	20501650	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	10724499	20501650	228748971	3	7299										
EIF2C3	0	genome.wustl.edu	37	chr1	36411332	36411332	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cctactcatggtgcccagaaGacctggctatggcaccatgg	11	13	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	36411332	36411332	G	T	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	missense	c.59	p.R20I	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	95	0	0	184	41	18.22	-	-	-	T	36411332	G	T	36411332	3	4	121	1	0	0	0	0	1	0	0	0	5042	942	33	2	65	2	EIF2C3	1	36411332	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	15909682	36411332	212839289	4	7300										
GRIK3	0	genome.wustl.edu	37	chr1	37270745	37270745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tttcctcctcaggacacccgCtgccccgccaccacttctcc	5	22	2	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	37270745	37270745	C	G	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	missense	c.2408	p.S803T	1.000	pfam_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	53	0	0	63	11	14.86	-	-	-	G	37270745	C	G	37270745	3	3	121	1	0	0	0	0	1	0	0	0	6826	797	28	4	359	4	GRIK3	1	37270745	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	859413	37270745	211979876	5	7301										
EPS15	0	genome.wustl.edu	37	chr1	51912687	51912687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tttcaagaatatttcacggaCctccaatccagacacaaatc	4	12	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	51912687	51912687	C	A	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	missense	c.742	p.V248F	1.000	smart_EPS15_homology,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_EPS15_homology	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	136	0	0	310	97	23.77	-	-	-	A	51912687	C	A	51912687	3	1	121	1	0	0	0	0	1	0	0	0	5229	507	18	4	2110	4	EPS15	1	51912687	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	14641942	51912687	197337934	6	7302										
DNAJC6	0	genome.wustl.edu	37	chr1	65860643	65860643	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gtcaggatttgctgggttctTttctgaacacatccagtgct	10	9	3	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	65860643	65860643	T	A	SNP	DNAJC6	ENST00000371069	human	ensembl	69_37n	1	known	missense	c.1966	p.F656I	1.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DnaJ_N,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	DNAJC6	HGNC	ENSG00000116675	212	0	0	376	89	19.14	-	-	-	A	65860643	T	A	65860643	3	1	121	1	0	0	0	0	1	0	0	0	4688	1841	64	5	1845	5	DNAJC6	1	65860643	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	13947956	65860643	183389978	7	7303										
HIAT1	0	genome.wustl.edu	37	chr1	100535194	100535194	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tgaaattttcaccagaaagtGttgcagcgtttatagcagtc	9	7	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	100535194	100535194	G	C	SNP	HIAT1	ENST00000370152	human	ensembl	69_37n	1	known	missense	c.844	p.V282L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	HIAT1	HGNC	ENSG00000156875	262	0	0	460	214	31.75	-	-	-	C	100535194	G	C	100535194	3	2	121	1	0	0	0	0	1	0	0	0	7148	1377	48	4	874	4	HIAT1	1	100535194	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	34674551	100535194	148715427	8	7304										
KCNA10	0	genome.wustl.edu	37	chr1	111060445	111060445	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gctctgtctcctggactagcTctgtgatgagagttgcaaag	12	9	3	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	111060445	111060445	T	A	SNP	KCNA10	ENST00000369771	human	ensembl	69_37n	-1	known	missense	c.965	p.E322V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105	180	1	0.55	224	54	19.42	-	-	-	A	111060445	T	A	111060445	3	1	121	1	0	0	0	0	1	0	0	0	8056	1551	54	5	574	5	KCNA10	1	111060445	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	10525251	111060445	138190176	9	7305										
SPAG17	0	genome.wustl.edu	37	chr1	118623811	118623811	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gactgagagtttgagattatTcaagtcagaatgcttcatat	9	5	3	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	118623811	118623811	T	C	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.2122	p.N708D	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	243	0	0	363	113	23.74	-	-	-	C	118623811	T	C	118623811	3	2	121	1	0	0	0	0	1	0	0	0	15070	1783	62	5	4685	5	SPAG17	1	118623811	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	7563366	118623811	130626810	10	7306										
ZNF687	0	genome.wustl.edu	37	chr1	151262465	151262465	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gatgaatacgtggcccacatGaagaaggagcatggcaaggt	14	7	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	151262465	151262465	G	T	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.2946	p.M982I	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	64	0	0	80	23	22.33	-	-	-	T	151262465	G	T	151262465	3	4	121	1	0	0	0	0	1	0	0	0	18188	1290	45	2	2964	2	ZNF687	1	151262465	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	32638654	151262465	97988156	11	7307										
ATP8B2	0	genome.wustl.edu	37	chr1	154302873	154302873	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cagcatcattttgttgcagaAgaagaaaggagggcgcgggc	15	7	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	154302873	154302873	A	C	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.132	p.E44D	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	160	0	0	292	47	13.86	-	-	-	C	154302873	A	C	154302873	3	2	121	1	0	0	0	0	1	0	0	0	1199	86	3	5	142	5	ATP8B2	1	154302873	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	3040408	154302873	94947748	12	7308										
UBQLN4	0	genome.wustl.edu	37	chr1	156012608	156012608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gggcaagcgtctgcatcatgCtgcgcatgtagggtgctgag	16	9	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	156012608	156012608	C	G	SNP	UBQLN4	ENST00000368309	human	ensembl	69_37n	-1	known	missense	c.1223	p.S408T	1.000	superfamily_XPC-bd,smart_STI1_HS-bd	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803	271	0	0	521	101	16.24	-	-	-	G	156012608	C	G	156012608	3	3	121	1	0	0	0	0	1	0	0	0	16996	797	28	4	602	4	UBQLN4	1	156012608	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	1709735	156012608	93238013	13	7309										
NCSTN	0	genome.wustl.edu	37	chr1	160314596	160314596	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tgttcgcctgctcaacgccaCtcatcagattggctgccagt	9	14	3	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	160314596	160314596	C	G	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	missense	c.170	p.T57S	1.000	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	172	0	0	380	65	14.61	-	-	-	G	160314596	C	G	160314596	3	3	121	1	0	0	0	0	1	0	0	0	10313	565	20	4	176	4	NCSTN	1	160314596	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	4301988	160314596	88936025	14	7310										
SELL	0	genome.wustl.edu	37	chr1	169670813	169670813	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tcaccctccttaatcattgaGaaacttttgtccaattctga	4	11	3	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	169670813	169670813	G	T	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.1008	p.F336L	0.627	pirsf_L-selectin	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	83	0	0	321	57	15.08	-	-	-	T	169670813	G	T	169670813	3	4	121	1	0	0	0	0	1	0	0	0	14104	933	33	2	161	2	SELL	1	169670813	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	9356217	169670813	79579808	15	7311										
CEP350	0	genome.wustl.edu	37	chr1	180047635	180047635	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gaatctccagtacctctgtaCtctcatctaaacagtgaaag	6	11	4	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	180047635	180047635	C	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	nonsense	c.5805	p.Y1935*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	119	0	0	241	62	20.39	-	-	-	G	180047635	C	G	180047635	4	3	121	1	0	0	0	0	0	1	0	0	3283	576	20	4	5915	4	CEP350	1	180047635	Nonsense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	10376822	180047635	69202986	16	7312										
NR5A2	0	genome.wustl.edu	37	chr1	200017390	200017390	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gaagcaacagaaaaaagcccTcatccgagccaatggactta	8	11	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	200017390	200017390	T	A	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.554	p.L185H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	146	1	0.67	297	52	14.9	-	-	-	A	200017390	T	A	200017390	3	1	121	1	0	0	0	0	1	0	0	0	10709	1551	54	5	572	5	NR5A2	1	200017390	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	19969755	200017390	49233231	17	7313										
LPGAT1	0	genome.wustl.edu	37	chr1	211924401	211924401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccaggggtacatctttaattGgaaagatcctattaagggtt	10	6	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	211924401	211924401	G	A	SNP	LPGAT1	ENST00000366996	human	ensembl	69_37n	-1	known	missense	c.863	p.P288L	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPGAT1	HGNC	ENSG00000123684	107	0	0	184	130	41.4	-	-	-	A	211924401	G	A	211924401	3	1	121	1	0	0	0	0	1	0	0	0	8980	1348	47	4	257	4	LPGAT1	1	211924401	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	11907011	211924401	37326220	18	7314										
SPATA17	0	genome.wustl.edu	37	chr1	217842375	217842375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ctttttttcttgattcacagGtagcatattatactatgatg	6	6	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	217842375	217842375	G	T	SNP	SPATA17	ENST00000366933	human	ensembl	69_37n	1	known	missense	c.241	p.V81L	0.998	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814	214	1	0.47	565	105	15.67	-	-	-	T	217842375	G	T	217842375	3	4	121	1	0	0	0	0	1	0	0	0	15093	1275	44	4	255	4	SPATA17	1	217842375	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	5917974	217842375	31408246	19	7315										
HHIPL2	0	genome.wustl.edu	37	chr1	222717112	222717112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggttgctccaggcgactcccAtcagggaggtagacccacac	12	14	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	222717112	222717112	A	T	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	missense	c.741	p.D247E	0.984	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	120	0	0	158	39	19.8	-	-	-	T	222717112	A	T	222717112	3	4	121	1	0	0	0	0	1	0	0	0	7145	214	8	5	1465	5	HHIPL2	1	222717112	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	4874737	222717112	26533509	20	7316										
COG2	0	genome.wustl.edu	37	chr1	230822805	230822805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aggaagtggtccttcggaaaCaaagcctgtggtttccattt	11	8	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	230822805	230822805	C	T	SNP	COG2	ENST00000366669	human	ensembl	69_37n	1	known	missense	c.1505	p.T502I	0.774	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	78	0	0	230	30	11.54	-	-	-	T	230822805	C	T	230822805	3	4	121	1	0	0	0	0	1	0	0	0	3688	478	17	4	1555	4	COG2	1	230822805	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	8105693	230822805	18427816	21	7317										
LYST	0	genome.wustl.edu	37	chr1	235922289	235922289	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tacctgtgagcacttgcagtTcggttgtaatttggctcata	10	8	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	235922289	235922289	T	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.6864	p.R2288	0.006	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	67	0	0	315	38	10.76	-	-	-	A	235922289	T	A	235922289	2	1	121	1	0	0	0	0	0	0	0	1	9195	1770	62	5		5	LYST	1	235922289	Silent	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	5099484	235922289	13328332	22	7318										
FMN2	0	genome.wustl.edu	37	chr1	240601454	240601454	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ttcagtatctggcatgaattCagctctgactttaaagactt	7	8	4	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	1	240601454	240601454	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.5004	p.F1668	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	158	0	0	402	139	25.69	-	-	-	T	240601454	C	T	240601454	2	4	121	1	0	0	0	0	0	0	0	1	5996	825	29	2		2	FMN2	1	240601454	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	4679165	240601454	8649167	23	7319										
MYT1L	0	genome.wustl.edu	37	chr2	1946873	1946873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cgatctcctcctcctcctccCggtccccctcctcgtcctcc	4	25	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	1946873	1946873	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.386	p.R129Q	0.990	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	652	0	0	782	179	18.61	-	-	-	T	1946873	C	T	1946873	3	4	121	1	0	0	0	0	1	0	0	0	10179	652	23	1	3236	1	MYT1L	2	1946873	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		1946873	241252500	24	7320										
C2orf71	0	genome.wustl.edu	37	chr2	29294720	29294720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	taggcagagggggaaagataGgtgctaagggcttccagcct	16	7	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	29294720	29294720	G	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.2408	p.P803H	0.001	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	65	0	0	84	25	22.73	-	-	-	T	29294720	G	T	29294720	3	4	121	1	0	0	0	0	1	0	0	0	2211	1000	35	4	1466	4	C2orf71	2	29294720	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	27347847	29294720	213904653	25	7321										
USP34	0	genome.wustl.edu	37	chr2	61520625	61520625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccatgattcctgctctttagGctctagaattccagaattaa	6	10	2	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	61520625	61520625	G	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.4522	p.P1508A	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	117	0	0	329	49	12.96	-	-	-	C	61520625	G	C	61520625	3	2	121	1	0	0	0	0	1	0	0	0	17162	1203	42	4	6310	4	USP34	2	61520625	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	32225905	61520625	181678748	26	7322										
TIA1	0	genome.wustl.edu	37	chr2	70454946	70454946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gagatcaccaacaaagacatGgaaatgatcttataagggga	10	6	2	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	70454946	70454946	G	A	SNP	TIA1	ENST00000433529	human	ensembl	69_37n	-1	known	missense	c.319	p.H107Y	1.000	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	119	0	0	154	62	28.7	-	-	-	A	70454946	G	A	70454946	3	1	121	1	0	0	0	0	1	0	0	0	15982	1348	47	4	873	4	TIA1	2	70454946	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	8934321	70454946	172744427	27	7323										
CD8A	0	genome.wustl.edu	37	chr2	87016512	87016512	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	acaagtcccggccaagggcgCccagatgtagatatcacagg	12	12	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	87016512	87016512	C	A	SNP	CD8A	ENST00000538832	human	ensembl	69_37n	-1	known	missense	c.682	p.A228S	0.888	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8A	HGNC	ENSG00000153563	67	0	0	74	22	22.92	-	-	-	A	87016512	C	A	87016512	3	1	121	1	0	0	0	0	1	0	0	0	3073	739	26	4	160	4	CD8A	2	87016512	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	16561566	87016512	156182861	28	7324										
VWA3B	0	genome.wustl.edu	37	chr2	98834413	98834413	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcaaacaggtttttgaaagaGgttgctgctttgactggagg	14	5	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	98834413	98834413	G	C	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	missense	c.1941	p.E647D	0.555	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	310	0	0	505	145	22.27	-	-	-	C	98834413	G	C	98834413	3	2	121	1	0	0	0	0	1	0	0	0	17338	991	35	4	1991	4	VWA3B	2	98834413	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	11817901	98834413	144364960	29	7325										
COL5A2	0	genome.wustl.edu	37	chr2	189904113	189904113	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ctactgagtgacttcagggtAgcatgaacccctgggtccgt	12	11	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	189904113	189904113	A	T	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	silent	c.3810	p.A1270	0.855	smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	223	0	0	207	109	34.49	-	-	-	T	189904113	A	T	189904113	2	4	121	1	0	0	0	0	0	0	0	1	3727	407	15	5		5	COL5A2	2	189904113	Silent	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	91069700	189904113	53295260	30	7326										
STAT4	0	genome.wustl.edu	37	chr2	191898277	191898277	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agatggctttcactgaatctTaataaaaaggtgccaggcat	9	7	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	2	191898277	191898277	T	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.1791	p.L597F	0.916	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	110	0	0	175	70	28.46	-	-	-	A	191898277	T	A	191898277	3	1	121	1	0	0	0	0	1	0	0	0	15358	1751	61	5	475	5	STAT4	2	191898277	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	1994164	191898277	51301096	31	7327										
VILL	0	genome.wustl.edu	37	chr3	38039808	38039808	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agatctatgtgtggcagggaCgcatgtctagcctccaggag	14	9	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	3	38039808	38039808	C	A	SNP	VILL	ENST00000283713	human	ensembl	69_37n	1	known	missense	c.895	p.R299S	0.994	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	218	1	0.45	121	134	52.55	-	-	-	A	38039808	C	A	38039808	3	1	121	1	0	0	0	0	1	0	0	0	17262	536	19	3	925	3	VILL	3	38039808	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		38039808	159982622	32	7328										
DZIP3	0	genome.wustl.edu	37	chr3	108355480	108355480	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tagagttttagtgggaaaaaAtgtttgaaggaaggatgtac	13	1	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	3	108355480	108355480	A	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.936	p.K312N	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	112	0	0	266	74	21.76	-	-	-	T	108355480	A	T	108355480	3	4	121	1	0	0	0	0	1	0	0	0	4900	98	4	5	974	5	DZIP3	3	108355480	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	70315672	108355480	89666950	33	7329										
KLHL24	0	genome.wustl.edu	37	chr3	183390243	183390243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	atccagttgaagattactggAtgcacgtacagaatacattc	8	8	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	3	183390243	183390243	A	G	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.1573	p.M525V	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	81	0	0	141	48	25.4	-	-	-	G	183390243	A	G	183390243	3	3	121	1	0	0	0	0	1	0	0	0	8432	333	12	5	1591	5	KLHL24	3	183390243	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	75034763	183390243	14632187	34	7330										
ECE2	0	genome.wustl.edu	37	chr3	183994723	183994723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	acagctgttaggctcacgcaCgcagctggagctggtcttag	13	11	2	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	3	183994723	183994723	C	T	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	missense	c.524	p.T175M	0.892	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	103	0	0	153	39	20.31	-	-	-	T	183994723	C	T	183994723	3	4	121	1	0	0	0	0	1	0	0	0	4925	536	19	1	1098	1	ECE2	3	183994723	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	604480	183994723	14027707	35	7331										
MRFAP1	0	genome.wustl.edu	37	chr4	6642829	6642829	+	Frame_Shift_Del	DEL	C	C	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tcggaggagagcgccctcaaCcacctccagaacccgggcga							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	4	6642829	6642829	C	-	DEL	MRFAP1	ENST00000320912	human	ensembl	69_37n	1	known	frame_shift_del	c.240	p.H81fs	0.000	NULL	NULL	-	no_errors	MRFAP1	HGNC	ENSG00000179010	54	0	0	91	21	18.75	-	-	-	-	6642829	C	-	6642829	7	5	121	1	0	1	0	1	0	0	0	0	9833	506	18	0	242	0	MRFAP1	4	6642829	Frame_Shift_Del	DEL	C	TCGA-A7-A0DA-01A-31D-A10Y-09		6642829	184511447	36	7332										
CATSPER3	0	genome.wustl.edu	37	chr5	134346160	134346160	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cttggatgattttggcactaGcttacccttcatcgatatct	7	10	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	5	134346160	134346160	G	C	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	missense	c.1034	p.S345T	0.863	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	323	0	0	172	107	38.35	-	-	-	C	134346160	G	C	134346160	3	2	121	1	0	0	0	0	1	0	0	0	2714	971	34	4	1060	4	CATSPER3	5	134346160	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09		134346160	46569100	37	7333										
ATP10B	0	genome.wustl.edu	37	chr5	160063260	160063260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gggaaggaagctgccattggCatctggcacatcgaagggag	16	8	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	5	160063260	160063260	C	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1057	p.A353S	0.592	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	101	0	0	63	46	42.2	-	-	-	A	160063260	C	A	160063260	3	1	121	1	0	0	0	0	1	0	0	0	1121	710	25	4	3392	4	ATP10B	5	160063260	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	25717100	160063260	20852000	38	7334										
HIST1H3A	0	genome.wustl.edu	37	chr6	26020728	26020728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tttttccgtcatggctcgcaCtaagcaaactgctcggaagt	9	11	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	26020728	26020728	C	T	SNP	HIST1H3A	ENST00000357647	human	ensembl	69_37n	1	known	missense	c.11	p.T4I	0.989	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3A	HGNC	ENSG00000198366	143	0	0	179	38	17.51	-	-	-	T	26020728	C	T	26020728	3	4	121	1	0	0	0	0	1	0	0	0	7206	565	20	4	13	4	HIST1H3A	6	26020728	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		26020728	145094339	39	7335										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043523	26043523	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	acttatttagagctagtgtaCttggtaactgccttagtgcc	9	8	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	26043523	26043523	C	G	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.363	p.K121N	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	81	0	0	152	41	21.24	-	-	-	G	26043523	C	G	26043523	3	3	121	1	0	0	0	0	1	0	0	0	7192	564	20	4	21	4	HIST1H2BB	6	26043523	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	22795	26043523	145071544	40	7336										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043604	26043604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aggcgcacagccgtctgaatCtccctggaggtgatggtcga	14	11	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	26043604	26043604	C	G	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.282	p.E94D	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	237	0	0	346	100	22.42	-	-	-	G	26043604	C	G	26043604	3	3	121	1	0	0	0	0	1	0	0	0	7192	912	32	2	102	2	HIST1H2BB	6	26043604	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	81	26043604	145071463	41	7337										
HIST1H1T	0	genome.wustl.edu	37	chr6	26108318	26108318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agctgcaggcacggtttcagAcataacaacagagaaacgca	10	10	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	26108318	26108318	A	G	SNP	HIST1H1T	ENST00000338379	human	ensembl	69_37n	-1	known	missense	c.4	p.S2P	0.994	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475	56	0	0	100	94	48.45	-	-	-	G	26108318	A	G	26108318	3	3	121	1	0	0	0	0	1	0	0	0	7178	275	10	5	623	5	HIST1H1T	6	26108318	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	64714	26108318	145006749	42	7338										
HIST1H3I	0	genome.wustl.edu	37	chr6	27840056	27840056	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcttgcgcggcgctttgccgCcggtggacttgcgagctgtt	16	12	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	27840056	27840056	C	A	SNP	HIST1H3I	ENST00000328488	human	ensembl	69_37n	-1	known	missense	c.38	p.G13V	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3I	HGNC	ENSG00000182572	74	0	0	68	19	21.84	-	-	-	A	27840056	C	A	27840056	3	1	121	1	0	0	0	0	1	0	0	0	7214	739	26	4	376	4	HIST1H3I	6	27840056	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	1731738	27840056	143275011	43	7339										
ZNF318	0	genome.wustl.edu	37	chr6	43304909	43304909	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tttattcttagttgtgaacaCtggattctgtgtggtcctgg	11	6	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	43304909	43304909	C	G	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.6827	p.S2276T	0.712	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	152	1	0.65	325	73	18.34	-	-	-	G	43304909	C	G	43304909	3	3	121	1	0	0	0	0	1	0	0	0	17932	565	20	4	16	4	ZNF318	6	43304909	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	15464853	43304909	127810158	44	7340										
SIM1	0	genome.wustl.edu	37	chr6	100897470	100897470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcatgtgtctaccttaccctGcacgaagtgagagtggtagg	13	9	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	100897470	100897470	G	T	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.454	p.Q152K	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	208	0	0	177	53	23.04	-	-	-	T	100897470	G	T	100897470	3	4	121	1	0	0	0	0	1	0	0	0	14412	1328	46	4	1878	4	SIM1	6	100897470	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	57592561	100897470	70217597	45	7341										
HDAC2	0	genome.wustl.edu	37	chr6	114274578	114274578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aatatataagactctctgatGatacctgaaaacaaatccat	4	8	1	4			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	114274578	114274578	G	A	SNP	HDAC2	ENST00000398283	human	ensembl	69_37n	-1	known	missense	c.784	p.H262Y	1.000	pfam_His_deacetylse_dom,prints_His_deacetylse_1	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591	108	0	0	180	40	18.18	-	-	-	A	114274578	G	A	114274578	3	1	121	1	0	0	0	0	1	0	0	0	7058	1290	45	2	1000	2	HDAC2	6	114274578	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	13377108	114274578	56840489	46	7342										
OR2A4	0	genome.wustl.edu	37	chr6	132022337	132022337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gttgcaggcgtaggcgatgtCgacgaccgccaggtgtgaga	17	9	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	6	132022337	132022337	C	T	SNP	OR2A4	ENST00000315453	human	ensembl	69_37n	-1	known	missense	c.205	p.D69N	0.919	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658	30	0	0	29	9	23.68	-	-	-	T	132022337	C	T	132022337	3	4	121	1	0	0	0	0	1	0	0	0	11052	884	31	1	730	1	OR2A4	6	132022337	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	17747759	132022337	39092730	47	7343										
LSM5	0	genome.wustl.edu	37	chr7	32529929	32529929	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gctccccaaaggacggcgatTacctaagggcagcagctgcg	13	13	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	32529929	32529929	T	A	SNP	LSM5	ENST00000223084	human	ensembl	69_37n	-1	known	missense	c.49	p.N17Y	0.997	NULL	NULL	-	no_errors	LSM5	HGNC	ENSG00000106355	194	0	0	120	54	30.86	-	-	-	A	32529929	T	A	32529929	3	1	121	1	0	0	0	0	1	0	0	0	9125	1769	61	5		5	LSM5	7	32529929	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09		32529929	126608734	48	7344										
TAF6	0	genome.wustl.edu	37	chr7	99707866	99707866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ctgcgatggagccataacgaGtcgtccagggcgtcttctcg	13	12	2	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	99707866	99707866	G	A	SNP	TAF6	ENST00000344095	human	ensembl	69_37n	-1	known	missense	c.1115	p.T372I	0.969	pfam_DUF1546,superfamily_ARM-type_fold	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290	287	0	0	376	89	19.14	-	-	-	A	99707866	G	A	99707866	3	1	121	1	0	0	0	0	1	0	0	0	15622	1029	36	4	938	4	TAF6	7	99707866	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	67177937	99707866	59430797	49	7345										
PVRIG	0	genome.wustl.edu	37	chr7	99818572	99818572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	caccaagccaggcctcccagGctgctcttcacgtcccttat	7	18	2	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	99818572	99818572	G	A	SNP	PVRIG	ENST00000317271	human	ensembl	69_37n	1	known	missense	c.679	p.A227T	0.000	NULL	NULL	-	no_errors	PVRIG	HGNC	ENSG00000213413	118	0	0	203	40	16.33	-	-	-	A	99818572	G	A	99818572	3	1	121	1	0	0	0	0	1	0	0	0	12921	1203	42	4	697	4	PVRIG	7	99818572	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	110706	99818572	59320091	50	7346										
SRRT	0	genome.wustl.edu	37	chr7	100485995	100485995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gggaggttatcctgggaaacCtcgcaacaggtgaggagggc	17	8	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	100485995	100485995	C	G	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.2543	p.P848R	1.000	pfam_Arsenite-R_2	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	133	0	0	189	45	19.15	-	-	-	G	100485995	C	G	100485995	3	3	121	1	0	0	0	0	1	0	0	0	15263	681	24	4	2616	4	SRRT	7	100485995	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	667423	100485995	58652668	51	7347										
TSPAN12	0	genome.wustl.edu	37	chr7	120428909	120428909	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aaacctcagcacctgcagttGtttggttcctctcaaaaagg	8	11	2	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	120428909	120428909	G	A	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	nonsense	c.655	p.Q219*	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	59	0	0	196	40	16.95	-	-	-	A	120428909	G	A	120428909	4	1	121	1	0	0	0	0	0	1	0	0	16732	1386	48	4	266	4	TSPAN12	7	120428909	Nonsense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	19942914	120428909	38709754	52	7348										
HYAL4	0	genome.wustl.edu	37	chr7	123516844	123516844	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tgaagcagtttgtgagttctGatttagggagctacatagcc	12	6	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	123516844	123516844	G	A	SNP	HYAL4	ENST00000223026	human	ensembl	69_37n	1	known	missense	c.1081	p.D361N	0.999	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase,prints_Glyco_hydro_56_PH20	-	no_errors	HYAL4	HGNC	ENSG00000106302	196	1	0.51	293	58	16.52	-	-	-	A	123516844	G	A	123516844	3	1	121	1	0	0	0	0	1	0	0	0	7520	1290	45	2	1091	2	HYAL4	7	123516844	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	3087935	123516844	35621819	53	7349										
GIMAP8	0	genome.wustl.edu	37	chr7	150171337	150171337	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cattgatgctccggacatctCatctttaaagaacattgact	6	10	2	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	7	150171337	150171337	C	T	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.920	p.S307L	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	76	0	0	139	28	16.77	-	-	-	T	150171337	C	T	150171337	3	4	121	1	0	0	0	0	1	0	0	0	6437	838	29	2	930	2	GIMAP8	7	150171337	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	26654493	150171337	8967326	54	7350										
TMEM66	0	genome.wustl.edu	37	chr8	29924354	29924354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	caagcctgtccagaaccctgGtcctgaattttcatatcctt	6	13	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	29924354	29924354	G	A	SNP	TMEM66	ENST00000256255	human	ensembl	69_37n	-1	known	missense	c.781	p.P261S	0.998	pfam_DUF1183_TMEM66	pfam_DUF1183_TMEM66	-	no_errors	TMEM66	HGNC	ENSG00000133872	334	1	0.3	542	107	16.46	-	-	-	A	29924354	G	A	29924354	3	1	121	1	0	0	0	0	1	0	0	0	16290	1261	44	4	250	4	TMEM66	8	29924354	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09		29924354	116439668	55	7351										
ADAM2	0	genome.wustl.edu	37	chr8	39634664	39634664	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	taactgcaagtgattccagaCttatggttctggggtgctga	12	7	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	39634664	39634664	C	A	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	missense	c.908	p.S303I	0.056	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	46	0	0	100	36	26.47	-	-	-	A	39634664	C	A	39634664	3	1	121	1	0	0	0	0	1	0	0	0	241	565	20	4	1339	4	ADAM2	8	39634664	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	9710310	39634664	106729358	56	7352										
IMPA1	0	genome.wustl.edu	37	chr8	82598029	82598029	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	caaagccataaacacctgaaCtgtttcctgctgtttctgtc	6	12	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	82598029	82598029	C	G	SNP	IMPA1	ENST00000449740	human	ensembl	69_37n	-1	known	missense	c.122	p.S41T	0.002	NULL	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	-	no_errors	IMPA1	HGNC	ENSG00000133731	207	0	0	265	127	32.4	-	-	-	G	82598029	C	G	82598029	3	3	121	1	0	0	0	0	1	0	0	0	7776	565	20	4	924	4	IMPA1	8	82598029	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	42963365	82598029	63765993	57	7353										
CSMD3	0	genome.wustl.edu	37	chr8	113353841	113353841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gccaataacagtactagtttCtgaggatccacttcgtactt	7	10	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	113353841	113353841	C	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.6517	p.E2173Q	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	177	0	0	610	91	12.96	-	-	-	G	113353841	C	G	113353841	3	3	121	1	0	0	0	0	1	0	0	0	3978	922	32	2	4726	2	CSMD3	8	113353841	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	30755812	113353841	33010181	58	7354										
KLHL38	0	genome.wustl.edu	37	chr8	124663967	124663967	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	atgctgtcatacctttccatGgagcccatgagctcctgccc	8	15	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	124663967	124663967	G	T	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	silent	c.1200	p.S400	0.986	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	197	0	0	340	113	24.94	-	-	-	T	124663967	G	T	124663967	2	4	121	1	0	0	0	0	0	0	0	1	8443	1335	47	4		4	KLHL38	8	124663967	Silent	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	11310126	124663967	21700055	59	7355										
FAM135B	0	genome.wustl.edu	37	chr8	139209858	139209858	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gagcaacaggcacaggtctcGgtgccacttgtgtgcgtgct	14	11	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	8	139209858	139209858	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	nonsense	c.724	p.R242*	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	152	0	0	227	103	31.21	-	-	-	A	139209858	G	A	139209858	4	1	121	1	0	0	0	0	0	1	0	0	5489	1124	39	1	3548	1	FAM135B	8	139209858	Nonsense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	14545891	139209858	7154164	60	7356										
KCNV2	0	genome.wustl.edu	37	chr9	2729625	2729625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tatgagtataccaccatacgCagggagaggggagaggtgaa	15	6	0	4			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	2729625	2729625	C	T	SNP	KCNV2	ENST00000382082	human	ensembl	69_37n	1	known	silent	c.1536	p.R512	0.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	109	0	0	267	200	42.83	-	-	-	T	2729625	C	T	2729625	2	4	121	1	0	0	0	0	0	0	0	1	8149	697	25	4		4	KCNV2	9	2729625	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		2729625	138483806	61	7357										
UBAP2	0	genome.wustl.edu	37	chr9	33935827	33935827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	atgacaagagtagcttgctgCtatacttactgtctagtgtc	9	8	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	33935827	33935827	C	T	SNP	UBAP2	ENST00000379225	human	ensembl	69_37n	-1	known	missense	c.878	p.S293N	0.000	NULL	pfam_DUF3697_Uba2	-	no_errors	UBAP2	HGNC	ENSG00000137073	115	0	0	205	60	22.64	-	-	-	T	33935827	C	T	33935827	3	4	121	1	0	0	0	0	1	0	0	0	16934	812	28	4		4	UBAP2	9	33935827	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	31206202	33935827	107277604	62	7358										
FGD3	0	genome.wustl.edu	37	chr9	95738615	95738615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gccagacactgggcctggcaGttcctccctagggaagcttc	12	14	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	95738615	95738615	G	T	SNP	FGD3	ENST00000337352	human	ensembl	69_37n	1	known	missense	c.77	p.S26I	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084	30	0	0	17	16	48.48	-	-	-	T	95738615	G	T	95738615	3	4	121	1	0	0	0	0	1	0	0	0	5880	1029	36	4	79	4	FGD3	9	95738615	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	61802788	95738615	45474816	63	7359										
ZNF462	0	genome.wustl.edu	37	chr9	109773238	109773238	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gatagacttttccctaaagaAtgaaacagtagccatctgtg	8	8	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	109773238	109773238	A	G	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.7628	p.N2543S	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	61	0	0	87	97	52.72	-	-	-	G	109773238	A	G	109773238	3	3	121	1	0	0	0	0	1	0	0	0	18022	101	4	5	7494	5	ZNF462	9	109773238	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	14034623	109773238	31440193	64	7360										
RGS3	0	genome.wustl.edu	37	chr9	116356374	116356374	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccatttcctggctcctcctgTctgagtcccagccccggctt	8	18	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	116356374	116356374	T	C	SNP	RGS3	ENST00000462403	human	ensembl	69_37n	1	known	missense	c.175	p.S59P	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	48	0	0	39	12	23.53	-	-	-	C	116356374	T	C	116356374	3	2	121	1	0	0	0	0	1	0	0	0	13390	1667	58	5	3594	5	RGS3	9	116356374	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	6583136	116356374	24857057	65	7361										
NPDC1	0	genome.wustl.edu	37	chr9	139935565	139935565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	taggggcggagttgagtgtcCagactccttccgggcaagct	15	10	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	9	139935565	139935565	C	T	SNP	NPDC1	ENST00000371600	human	ensembl	69_37n	-1	known	missense	c.568	p.G190R	0.007	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281	77	0	0	74	15	16.85	-	-	-	T	139935565	C	T	139935565	3	4	121	1	0	0	0	0	1	0	0	0	10645	603	21	4	671	4	NPDC1	9	139935565	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	23579191	139935565	1277866	66	7362										
BEND7	0	genome.wustl.edu	37	chr10	13522910	13522910	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cagaccaaccttttattgcaCccacaatattttggtctagt	5	11	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	13522910	13522910	C	G	SNP	BEND7	ENST00000396900	human	ensembl	69_37n	-1	known	missense	c.1052	p.G351A	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND7	HGNC	ENSG00000165626	244	0	0	619	106	14.62	-	-	-	G	13522910	C	G	13522910	3	3	121	1	0	0	0	0	1	0	0	0	1407	507	18	4	538	4	BEND7	10	13522910	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		13522910	122011837	67	7363										
CUBN	0	genome.wustl.edu	37	chr10	16893262	16893262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aatcataaaggcatctttgcCtagtacttgctgcctccaga	7	11	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	16893262	16893262	C	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.9635	p.R3212T	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	117	0	0	357	65	15.4	-	-	-	G	16893262	C	G	16893262	3	3	121	1	0	0	0	0	1	0	0	0	4082	681	24	4	1268	4	CUBN	10	16893262	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	3370352	16893262	118641485	68	7364										
CTNNA3	0	genome.wustl.edu	37	chr10	69299408	69299408	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tcatctgtaaatctctcagcTgatactttcagagcttcacc	5	12	6	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	69299408	69299408	T	A	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	silent	c.312	p.S104	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	47	0	0	54	31	36.47	-	-	-	A	69299408	T	A	69299408	2	1	121	1	0	0	0	0	0	0	0	1	4046	1567	55	5		5	CTNNA3	10	69299408	Silent	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	52406146	69299408	66235339	69	7365										
CHST3	0	genome.wustl.edu	37	chr10	73767504	73767506	+	In_Frame_Del	DEL	AAG	AAG	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccgtctgtacgcccttcgtcAagaaggtcttcgagaagtac							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	73767504	73767506	AAG	-	DEL	CHST3	ENST00000373115	human	ensembl	69_37n	1	known	in_frame_del	c.715_717	p.K240in_frame_del	1.000:1.000:1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863	24	0	0	19	7	26.92	-	-	-	-	73767506	AAG	-	73767504	7	5	121	1	0	1	0	1	0	0	0	0	3434	131	5	0	721	0	CHST3	10	73767504	In_Frame_Del	DEL	AAG	TCGA-A7-A0DA-01A-31D-A10Y-09	4468096	73767504	61767243	70	7366										
TTC18	0	genome.wustl.edu	37	chr10	75071672	75071672	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agattttatactaggtgcctGctgaaagaaaatgaacacac	8	7	0	4			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	75071672	75071672	G	C	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	missense	c.1294	p.Q432E	0.158	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	106	0	0	164	42	20.39	-	-	-	C	75071672	G	C	75071672	3	2	121	1	0	0	0	0	1	0	0	0	16782	1333	46	4	2139	4	TTC18	10	75071672	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	1304168	75071672	60463075	71	7367										
DNMBP	0	genome.wustl.edu	37	chr10	101643811	101643811	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ttctggctgcccatggggtcTtttttcttaatcacacccac	7	13	4	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	101643811	101643811	T	G	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.4026	p.K1342N	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	100	0	0	117	50	29.94	-	-	-	G	101643811	T	G	101643811	3	3	121	1	0	0	0	0	1	0	0	0	4709	1606	56	5	791	5	DNMBP	10	101643811	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	26572139	101643811	33890936	72	7368										
NFKB2	0	genome.wustl.edu	37	chr10	104158163	104158163	+	Frame_Shift_Del	DEL	C	C	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	atgccattgtgttccggacaCccccctatcacaagatgaag							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	10	104158163	104158163	C	-	DEL	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	frame_shift_del	c.874	p.Y294fs	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NF_Rel_dor	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	310	0	0	248	91	26.15	-	-	-	-	104158163	C	-	104158163	7	5	121	1	0	1	0	1	0	0	0	0	10448	507	18	0	912	0	NFKB2	10	104158163	Frame_Shift_Del	DEL	C	TCGA-A7-A0DA-01A-31D-A10Y-09	2514352	104158163	31376584	73	7369										
OR5I1	0	genome.wustl.edu	37	chr11	55703812	55703812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggacaatctgcagttcagggCgagttggaaaacctaataga	12	7	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	55703812	55703812	C	T	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.65	p.R22H	0.003	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	29	0	0	64	53	45.3	-	-	-	T	55703812	C	T	55703812	3	4	121	1	0	0	0	0	1	0	0	0	11237	768	27	1	882	1	OR5I1	11	55703812	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		55703812	79302704	74	7370										
SMTNL1	0	genome.wustl.edu	37	chr11	57313409	57313409	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ctgagtccccttcctcagggGagaagaaggagaaggcacca	13	11	1	4			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	57313409	57313409	G	T	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	nonsense	c.1027	p.E343*	0.235	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	59	0	0	94	28	22.95	-	-	-	T	57313409	G	T	57313409	4	4	121	1	0	0	0	0	0	1	0	0	14904	1175	41	2	1045	2	SMTNL1	11	57313409	Nonsense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	1609597	57313409	77693107	75	7371										
OR10Q1	0	genome.wustl.edu	37	chr11	57996010	57996010	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccaagaggaaacagtccgtgCtgccgagggtgacaaagaag	14	9	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	57996010	57996010	C	A	SNP	OR10Q1	ENST00000316770	human	ensembl	69_37n	-1	known	missense	c.338	p.S113I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475	167	0	0	185	51	21.61	-	-	-	A	57996010	C	A	57996010	3	1	121	1	0	0	0	0	1	0	0	0	10989	797	28	4	625	4	OR10Q1	11	57996010	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	682601	57996010	77010506	76	7372										
NAALAD2	0	genome.wustl.edu	37	chr11	89916133	89916133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aactgatgctcctggaaagaGcattcatcgatcctcttggt	9	10	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	89916133	89916133	G	A	SNP	NAALAD2	ENST00000534061	human	ensembl	69_37n	1	known	missense	c.1990	p.A664T	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616	135	0	0	314	68	17.8	-	-	-	A	89916133	G	A	89916133	3	1	121	1	0	0	0	0	1	0	0	0	10200	971	34	4	2060	4	NAALAD2	11	89916133	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	31920123	89916133	45090383	77	7373										
SIDT2	0	genome.wustl.edu	37	chr11	117060946	117060946	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggctgcttttcctgctcatcAtcctgcaacgggagatcaac	9	13	3	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	117060946	117060946	A	C	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.1621	p.I541L	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	264	2	0.75	343	78	18.53	-	-	-	C	117060946	A	C	117060946	3	2	121	1	0	0	0	0	1	0	0	0	14392	217	8	5	1624	5	SIDT2	11	117060946	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	27144813	117060946	17945570	78	7374										
CEP164	0	genome.wustl.edu	37	chr11	117280410	117280410	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cggcagatcagcagccagctGagcagtgtcctcagcatcct	11	14	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	11	117280410	117280410	G	A	SNP	CEP164	ENST00000278935	human	ensembl	69_37n	1	known	silent	c.3825	p.L1275	0.068	NULL	superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	CEP164	HGNC	ENSG00000110274	70	0	0	52	34	39.53	-	-	-	A	117280410	G	A	117280410	2	1	121	1	0	0	0	0	0	0	0	1	3278	1277	45	2		2	CEP164	11	117280410	Silent	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	219464	117280410	17726106	79	7375										
SLCO1C1	0	genome.wustl.edu	37	chr12	20858927	20858927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ttagctactttggagccaaaCttcacaggccaaaaataatt	6	9	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	12	20858927	20858927	C	T	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.316	p.L106F	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	145	0	0	192	71	27	-	-	-	T	20858927	C	T	20858927	3	4	121	1	0	0	0	0	1	0	0	0	14814	565	20	4	326	4	SLCO1C1	12	20858927	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		20858927	112992968	80	7376										
TSPAN31	0	genome.wustl.edu	37	chr12	58140421	58140421	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	catgagcaacaagactcgggAtgaactggaaagaagttttg	12	6	0	4			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	12	58140421	58140421	A	G	SNP	TSPAN31	ENST00000257910	human	ensembl	69_37n	1	known	missense	c.362	p.D121G	0.987	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	TSPAN31	HGNC	ENSG00000135452	227	0	0	230	92	28.57	-	-	-	G	58140421	A	G	58140421	3	3	121	1	0	0	0	0	1	0	0	0	16742	333	12	5	376	5	TSPAN31	12	58140421	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	37281494	58140421	75711474	81	7377										
CEP290	0	genome.wustl.edu	37	chr12	88513938	88513938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	catcaaggaaatcactgatcTtcaattcaagtttattgatt	5	7	5	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	12	88513938	88513938	T	C	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.1475	p.K492R	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	143	0	0	137	250	64.43	-	-	-	C	88513938	T	C	88513938	3	2	121	1	0	0	0	0	1	0	0	0	3282	1609	56	5	6124	5	CEP290	12	88513938	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	30373517	88513938	45337957	82	7378										
ARL1	0	genome.wustl.edu	37	chr12	101790184	101790184	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcatgatacttgccattccaTtgcctcatcaaggccggtgc	9	13	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	12	101790184	101790184	T	C	SNP	ARL1	ENST00000261636	human	ensembl	69_37n	-1	known	missense	c.508	p.M170V	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL1	HGNC	ENSG00000120805	274	1	0.36	336	72	17.65	-	-	-	C	101790184	T	C	101790184	3	2	121	1	0	0	0	0	1	0	0	0	927	1493	52	5	45	5	ARL1	12	101790184	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	13276246	101790184	32061711	83	7379										
DHRS12	0	genome.wustl.edu	37	chr13	52345531	52345531	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ttcgagctgtgtccttgtggCtggcatttaccttcatgcat	10	10	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	13	52345531	52345531	C	G	SNP	DHRS12	ENST00000280056	human	ensembl	69_37n	-1	known	missense	c.660	p.Q220H	0.000	NULL	pfam_DH_sc/Rdtase_SDR	-	no_errors	DHRS12	HGNC	ENSG00000102796	339	1	0.29	389	213	35.32	-	-	-	G	52345531	C	G	52345531	3	3	121	1	0	0	0	0	1	0	0	0	4524	796	28	4	333	4	DHRS12	13	52345531	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		52345531	62824347	84	7380										
HEATR5A	0	genome.wustl.edu	37	chr14	31787465	31787465	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agtgacatcaggtggtgtctCtgaagtgaaggctggtctaa	14	6	3	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	14	31787465	31787465	C	G	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.3985	p.E1329Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	167	0	0	376	55	12.76	-	-	-	G	31787465	C	G	31787465	3	3	121	1	0	0	0	0	1	0	0	0	7082	922	32	2	2181	2	HEATR5A	14	31787465	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		31787465	75562075	85	7381										
LRFN5	0	genome.wustl.edu	37	chr14	42356845	42356845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agatctctggtgtatgataaCggaacacttgacattcttat	8	7	2	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	14	42356845	42356845	C	G	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	missense	c.1017	p.N339K	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	115	0	0	169	109	39.21	-	-	-	G	42356845	C	G	42356845	3	3	121	1	0	0	0	0	1	0	0	0	9007	535	19	3	1019	3	LRFN5	14	42356845	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	10569380	42356845	64992695	86	7382										
FANCM	0	genome.wustl.edu	37	chr14	45644732	45644732	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gaaccgtgtgtgttattaacAgagtgtcagtttacaaataa	9	5	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	14	45644732	45644732	A	G	SNP	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	silent	c.2775	p.T925	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	35	0	0	71	113	61.41	-	-	-	G	45644732	A	G	45644732	2	3	121	1	0	0	0	0	0	0	0	1	5717	175	7	5		5	FANCM	14	45644732	Silent	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	3287887	45644732	61704808	87	7383										
WDR20	0	genome.wustl.edu	37	chr14	102606230	102606230	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcggtgggcgtgatccgggcActtagggcaggatgaacgct	18	9	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	14	102606230	102606230	A	C	SNP	WDR20	ENST00000561154	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WDR20	HGNC	ENSG00000140153	95	0	0	81	16	16.49	-	-	-	C	102606230	A	C	102606230	1	2	121	0	1	0	0	0	0	0	0	0	17377	174	6	5		5	WDR20	14	102606230	RNA	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	56961498	102606230	4743310	88	7384										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32929935	32929935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	atttcttctgggataaataaCagggtccttaggagaccatc	9	8	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	15	32929935	32929935	C	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	missense	c.2961	p.N987K	0.019	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	74	0	0	75	23	23.47	-	-	-	A	32929935	C	A	32929935	3	1	121	1	0	0	0	0	1	0	0	0	865	477	17	4	3030	4	ARHGAP11A	15	32929935	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		32929935	69601457	89	7385										
ETFA	0	genome.wustl.edu	37	chr15	76578063	76578063	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agccactctgatatttccacTggtgaagtacttgatgctgc	9	10	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	15	76578063	76578063	T	A	SNP	ETFA	ENST00000559973	human	ensembl	69_37n	-1	putative	missense	c.289	p.S97C	0.987	NULL	pfam_ETF_asu_C,pfam_ETF_a/b_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ETFA	HGNC	ENSG00000140374	210	0	0	511	91	15.12	-	-	-	A	76578063	T	A	76578063	3	1	121	1	0	0	0	0	1	0	0	0	5306	1567	55	5	446	5	ETFA	15	76578063	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	43648128	76578063	25953329	90	7386										
ZNF774	0	genome.wustl.edu	37	chr15	90904480	90904482	+	In_Frame_Del	DEL	CAT	CAT	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	agagcttccgtcagaaagcgCatcttttatgccatcaaaac							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	15	90904480	90904482	CAT	-	DEL	ZNF774	ENST00000354377	human	ensembl	69_37n	1	known	in_frame_del	c.1417_1419	p.H473in_frame_del	0.305:0.665:0.813	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF774	HGNC	ENSG00000196391	69	0	0	158	27	14.59	-	-	-	-	90904482	CAT	-	90904480	7	5	121	1	0	1	0	1	0	0	0	0	18240	710	25	0	1427	0	ZNF774	15	90904480	In_Frame_Del	DEL	CAT	TCGA-A7-A0DA-01A-31D-A10Y-09	14326417	90904480	11626912	91	7387										
ASB7	0	genome.wustl.edu	37	chr15	101152633	101152636	+	Splice_Site	DEL	GTGA	GTGA	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggtttttctagaacacggagGtgagttttgtagaagcaaat							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	15	101152633	101152636	GTGA	-	DEL	ASB7	ENST00000332783	human	ensembl	69_37n	1	known	splice_site_del	c.211+1_211+1	e1+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	ASB7	HGNC	ENSG00000183475	198	0	0	375	104	21.71	-	-	-	-	101152636	GTGA	-	101152633	8	5	121	1	0	1	0	1	0	0	1	0	1032	1275	44	0	214	0	ASB7	15	101152633	Splice_Site	DEL	GTGA	TCGA-A7-A0DA-01A-31D-A10Y-09	10248153	101152633	1378759	92	7388										
TRAF7	0	genome.wustl.edu	37	chr16	2226284	2226285	+	Frame_Shift_Del	DEL	AT	AT	-													0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aggtctggagtatggacaacAtgatctgcacgcagaccctg							TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	16	2226284	2226285	AT	-	DEL	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	frame_shift_del	c.1897_1898	p.M633fs	1.000:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	43	0	0	48	10	17.24	-	-	-	-	2226285	AT	-	2226284	7	5	121	1	0	1	0	1	0	0	0	0	16542	217	8	0	1971	0	TRAF7	16	2226284	Frame_Shift_Del	DEL	AT	TCGA-A7-A0DA-01A-31D-A10Y-09		2226284	88128469	93	7389										
CASKIN1	0	genome.wustl.edu	37	chr16	2240078	2240078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cctcggctagtcttgcctttGttgtccttgatgtccacagc	9	13	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	16	2240078	2240078	G	T	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	missense	c.240	p.N80K	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	45	0	0	33	7	17.5	-	-	-	T	2240078	G	T	2240078	3	4	121	1	0	0	0	0	1	0	0	0	2691	1368	48	4	4127	4	CASKIN1	16	2240078	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	13794	2240078	88114675	94	7390										
SRRM2	0	genome.wustl.edu	37	chr16	2816694	2816694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gctatccgccgccgctccagAtcccgtactccacgaacagc	8	19	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	16	2816694	2816694	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.6165	p.R2055S	0.633	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	71	0	0	86	19	18.1	-	-	-	C	2816694	A	C	2816694	3	2	121	1	0	0	0	0	1	0	0	0	15260	330	12	5	6203	5	SRRM2	16	2816694	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	576616	2816694	87538059	95	7391										
ZNF174	0	genome.wustl.edu	37	chr16	3458760	3458760	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	acaggagagagaccctacacGtgcggagagtgtggaaactg	15	8	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	16	3458760	3458760	G	A	SNP	ZNF174	ENST00000268655	human	ensembl	69_37n	1	known	silent	c.1065	p.T355	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	81	0	0	127	39	23.49	-	-	-	A	3458760	G	A	3458760	2	1	121	1	0	0	0	0	0	0	0	1	17840	1132	40	1		1	ZNF174	16	3458760	Silent	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	642066	3458760	86895993	96	7392										
NDRG4	0	genome.wustl.edu	37	chr16	58543214	58543214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gccctccgcagccagggaagCtgactgaagccttcaaatac	10	14	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	16	58543214	58543214	C	G	SNP	NDRG4	ENST00000394282	human	ensembl	69_37n	1	known	missense	c.979	p.L327V	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG4	HGNC	ENSG00000103034	166	0	0	168	47	21.76	-	-	-	G	58543214	C	G	58543214	3	3	121	1	0	0	0	0	1	0	0	0	10326	796	28	4	1037	4	NDRG4	16	58543214	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	55084454	58543214	31811539	97	7393										
OR3A1	0	genome.wustl.edu	37	chr17	3195848	3195848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggatgaactcagcaatgactGttccattggccccagattct	9	11	2	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	3195848	3195848	G	A	SNP	OR3A1	ENST00000323404	human	ensembl	69_37n	-1	known	missense	c.29	p.T10I	0.171	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090	54	0	0	75	13	14.77	-	-	-	A	3195848	G	A	3195848	3	1	121	1	0	0	0	0	1	0	0	0	11110	1377	48	4	922	4	OR3A1	17	3195848	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09		3195848	77999362	98	7394										
CLEC10A	0	genome.wustl.edu	37	chr17	6978705	6978705	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccggtcgcatagtctgttccAtccacccacttccaggctcc	7	18	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	6978705	6978705	A	C	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	missense	c.756	p.D252E	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC10A	HGNC	ENSG00000132514	196	1	0.51	259	74	22.22	-	-	-	C	6978705	A	C	6978705	3	2	121	1	0	0	0	0	1	0	0	0	3525	214	8	5	202	5	CLEC10A	17	6978705	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	3782857	6978705	74216505	99	7395										
TP53	0	genome.wustl.edu	37	chr17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcaaatttccttccactcggAtaagatgctgaggaggggcc	12	10	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	7578265	7578265	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.584	p.I195T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	272	0	0	150	180	54.55	-	-	-	G	7578265	A	G	7578265	3	3	121	1	0	0	0	0	1	0	0	0	16477	333	12	5	710	5	TP53	17	7578265	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	599560	7578265	73616945	100	7396										
SUPT6H	0	genome.wustl.edu	37	chr17	27028471	27028471	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tcccaggtccaacagccatgCagccatcgactggggaaaaa	10	13	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	27028471	27028471	C	G	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.5009	p.A1670G	1.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	85	0	0	78	30	27.78	-	-	-	G	27028471	C	G	27028471	3	3	121	1	0	0	0	0	1	0	0	0	15491	710	25	4	5151	4	SUPT6H	17	27028471	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	19450206	27028471	54166739	101	7397										
MSL1	0	genome.wustl.edu	37	chr17	38290099	38290099	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gttgaaagtttgatgattacCcccttcttgcctgttgtagc	9	9	1	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	38290099	38290099	C	T	SNP	MSL1	ENST00000398532	human	ensembl	69_37n	1	known	silent	c.1701	p.T567	1.000	NULL	NULL	-	no_errors	MSL1	HGNC	ENSG00000188895	322	1	0.31	324	126	28	-	-	-	T	38290099	C	T	38290099	2	4	121	1	0	0	0	0	0	0	0	1	9949	610	22	4		4	MSL1	17	38290099	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	11261628	38290099	42905111	102	7398										
MARCH10	0	genome.wustl.edu	37	chr17	60814611	60814611	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ttctcagtcattggctgtgaCgatgggaccaagtttcttct	10	9	4	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	17	60814611	60814611	C	A	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	silent	c.618	p.S206	0.003	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	284	0	0	409	114	21.8	-	-	-	A	60814611	C	A	60814611	2	1	121	1	0	0	0	0	0	0	0	1	9370	523	19	3		3	MARCH10	17	60814611	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	22524512	60814611	20380599	103	7399										
ATP8B1	0	genome.wustl.edu	37	chr18	55361813	55361813	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	actgagatgaaaaataaataCcgtgtaaaccatgtagttca	7	6	1	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	18	55361813	55361813	C	T	SNP	ATP8B1	ENST00000283684	human	ensembl	69_37n	-1	known	splice_site	c.1029+1	e10+1	1.000	-	-	-	no_errors	ATP8B1	HGNC	ENSG00000081923	267	0	0	266	40	13.07	-	-	-	T	55361813	C	T	55361813	5	4	121	1	0	0	0	0	0	0	1	0	1198	521	18	4	2797	4	ATP8B1	18	55361813	Splice_Site	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		55361813	22715435	104	7400										
LDLR	0	genome.wustl.edu	37	chr19	11216199	11216199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cttcgagttccactgcctaaGtggcgagtgcatccactcca	9	14	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	11216199	11216199	G	T	SNP	LDLR	ENST00000558518	human	ensembl	69_37n	1	known	missense	c.617	p.S206I	0.999	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164	55	0	0	28	18	39.13	-	-	-	T	11216199	G	T	11216199	3	4	121	1	0	0	0	0	1	0	0	0	8758	1029	36	4	631	4	LDLR	19	11216199	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09		11216199	47912784	105	7401										
ATP1A3	0	genome.wustl.edu	37	chr19	42474581	42474581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gcagaggatggtgatggtgcCcaggggcagcgggatgttgg	21	6	0	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	42474581	42474581	C	A	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	missense	c.2416	p.G806C	1.000	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	383	0	0	394	101	20.4	-	-	-	A	42474581	C	A	42474581	3	1	121	1	0	0	0	0	1	0	0	0	1134	623	22	4	692	4	ATP1A3	19	42474581	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	31258382	42474581	16654402	106	7402										
PPP1R13L	0	genome.wustl.edu	37	chr19	45900186	45900186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gtcccttgggggacagcgggCtgtaggggtgtagggttggg	22	6	0	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	45900186	45900186	C	T	SNP	PPP1R13L	ENST00000360957	human	ensembl	69_37n	-1	known	missense	c.329	p.S110N	0.996	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881	82	0	0	74	12	13.95	-	-	-	T	45900186	C	T	45900186	3	4	121	1	0	0	0	0	1	0	0	0	12435	797	28	4	2197	4	PPP1R13L	19	45900186	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	3425605	45900186	13228797	107	7403										
BCAT2	0	genome.wustl.edu	37	chr19	49302971	49302971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cgaccccgcccacccaggccCggatgaaggctgggtcggcc	14	18	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	49302971	49302971	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	missense	c.656	p.R219Q	0.998	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	42	0	0	49	36	41.86	-	-	-	T	49302971	C	T	49302971	3	4	121	1	0	0	0	0	1	0	0	0	1359	652	23	1	546	1	BCAT2	19	49302971	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	3402785	49302971	9826012	108	7404										
KLK15	0	genome.wustl.edu	37	chr19	51330004	51330004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tggcacaatgcaacgtatctGggagactcactggggaagac	13	9	2	2			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	51330004	51330004	G	T	SNP	KLK15	ENST00000326856	human	ensembl	69_37n	-1	known	missense	c.491	p.P164Q	0.534	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	215	0	0	250	51	16.94	-	-	-	T	51330004	G	T	51330004	3	4	121	1	0	0	0	0	1	0	0	0	8456	1348	47	4	287	4	KLK15	19	51330004	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	2027033	51330004	7798979	109	7405										
LILRA6	0	genome.wustl.edu	37	chr19	54744774	54744774	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gagaggttgtgtgcaccataGcacctgtactggcccccgtg	13	12	0	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	19	54744774	54744774	G	T	SNP	LILRA6	ENST00000419410	human	ensembl	69_37n	-1	known	nonsense	c.888	p.C296*	0.864	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	214	0	0	258	48	15.69	-	-	-	T	54744774	G	T	54744774	4	4	121	1	0	0	0	0	0	1	0	0	8844	963	34	4	573	4	LILRA6	19	54744774	Nonsense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	3414770	54744774	4384209	110	7406										
NSFL1C	0	genome.wustl.edu	37	chr20	1434913	1434913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cataggcagactcttcctctGgtgctgccccaaggcggtag	12	13	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	20	1434913	1434913	G	A	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.488	p.P163L	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	135	0	0	316	49	13.42	-	-	-	A	1434913	G	A	1434913	3	1	121	1	0	0	0	0	1	0	0	0	10745	1348	47	4	650	4	NSFL1C	20	1434913	Missense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09		1434913	61590607	111	7407										
CDC25B	0	genome.wustl.edu	37	chr20	3782017	3782017	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gatgatggatttgtggacatCctagagagtgacttaaaggt	13	4	0	3			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	20	3782017	3782017	C	T	SNP	CDC25B	ENST00000245960	human	ensembl	69_37n	1	known	silent	c.822	p.I274	1.000	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224	51	0	0	56	67	54.47	-	-	-	T	3782017	C	T	3782017	2	4	121	1	0	0	0	0	0	0	0	1	3092	845	30	2		2	CDC25B	20	3782017	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	2347104	3782017	59243503	112	7408										
COX4I2	0	genome.wustl.edu	37	chr20	30227892	30227892	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ccagctgacccacgccgaaaAggtggcctgtaagtgtcagg	13	12	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	20	30227892	30227892	A	G	SNP	COX4I2	ENST00000376075	human	ensembl	69_37n	1	known	missense	c.239	p.K80R	1.000	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam,prints_Cyt_c_oxidase_su4	-	no_errors	COX4I2	HGNC	ENSG00000131055	50	0	0	64	17	20.99	-	-	-	G	30227892	A	G	30227892	3	3	121	1	0	0	0	0	1	0	0	0	3800	72	3	5	245	5	COX4I2	20	30227892	Missense_Mutation	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	26445875	30227892	32797628	113	7409										
PI4KA	0	genome.wustl.edu	37	chr22	21173951	21173951	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gagagatgctggacacactgCtggttttcctcttcagggta	12	9	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	22	21173951	21173951	C	G	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.767	p.S256T	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	68	0	0	51	65	56.03	-	-	-	G	21173951	C	G	21173951	3	3	121	1	0	0	0	0	1	0	0	0	11947	797	28	4	5741	4	PI4KA	22	21173951	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09		21173951	30130615	114	7410										
MXRA5	0	genome.wustl.edu	37	chrX	3241923	3241923	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tgggcttcgggtattgctaaAgcattgcaaggcaatgtcac	12	8	1	0			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	3241923	3241923	A	G	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.1803	p.A601	0.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	266	0	0	407	76	15.73	-	-	-	G	3241923	A	G	3241923	2	3	121	1	0	0	0	0	0	0	0	1	10075	59	3	5		5	MXRA5	23	3241923	Silent	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09		3241923	152028637	115	7411										
VCX3B	0	genome.wustl.edu	37	chrX	8434392	8434392	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	tggaagaaccactgagtcagGagagcgagatggaagaacta	14	6	1	5			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	8434392	8434392	G	T	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	nonsense	c.619	p.E207*	0.909	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	431	1	0.23	561	178	24.05	-	-	-	T	8434392	G	T	8434392	4	4	121	1	0	0	0	0	0	1	0	0	17242	1175	41	2	629	2	VCX3B	23	8434392	Nonsense_Mutation	SNP	G	TCGA-A7-A0DA-01A-31D-A10Y-09	5192469	8434392	146836168	116	7412										
UBA1	0	genome.wustl.edu	37	chrX	47061807	47061807	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	gactttgtggtgacggacttCgccaagttttctcgccctgc	11	12	1	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	47061807	47061807	C	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.960	p.F320	0.938	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	285	0	0	315	136	30.09	-	-	-	T	47061807	C	T	47061807	2	4	121	1	0	0	0	0	0	0	0	1	16924	883	31	1		1	UBA1	23	47061807	Silent	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	38627415	47061807	108208753	117	7413										
TRO	0	genome.wustl.edu	37	chrX	54949939	54949939	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	ggccccacttgccactcagaTagtcacaaaccaagccctgg	8	16	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	54949939	54949939	T	A	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.974	p.I325K	0.404	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	37	0	0	66	17	20.48	-	-	-	A	54949939	T	A	54949939	3	1	121	1	0	0	0	0	1	0	0	0	16670	1406	49	5	980	5	TRO	23	54949939	Missense_Mutation	SNP	T	TCGA-A7-A0DA-01A-31D-A10Y-09	7888132	54949939	100320621	118	7414										
PAGE2	0	genome.wustl.edu	37	chrX	55117826	55117826	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	aagatagaggatgagcctggAgatggtcctgatgtcaggga	16	5	1	5			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	55117826	55117826	A	G	SNP	PAGE2	ENST00000374968	human	ensembl	69_37n	1	known	silent	c.255	p.G85	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE2	HGNC	ENSG00000234068	579	2	0.34	748	237	24.06	-	-	-	G	55117826	A	G	55117826	2	3	121	1	0	0	0	0	0	0	0	1	11463	291	11	5		5	PAGE2	23	55117826	Silent	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	167887	55117826	100152734	119	7415										
MST4	0	genome.wustl.edu	37	chrX	131202597	131202597	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	cagtcagcttatgactcaaaAgtaaagtattacctgtacaa	6	8	2	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	131202597	131202597	A	G	SNP	MST4	ENST00000394334	human	ensembl	69_37n	1	known	silent	c.597	p.K199	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MST4	Clone_based_vega_gene	ENSG00000134602	35	0	0	66	34	34	-	-	-	G	131202597	A	G	131202597	2	3	121	1	0	0	0	0	0	0	0	1	9964	86	3	5		5	MST4	23	131202597	Silent	SNP	A	TCGA-A7-A0DA-01A-31D-A10Y-09	76084771	131202597	24067963	120	7416										
FLNA	0	genome.wustl.edu	37	chrX	153586901	153586901	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0743801652892562	9	0.79133532817198	1.09633684641359	0.883160237388724	1.24681445278408	0.400323058285099	0.991179622791967	0	attgacggtctgggtgccatCagcgttgtctaccacgtcca	11	12	3	1			TCGA-A7-A0DA-01A-31D-A10Y-09	TCGA-A7-A0DA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	878337fe-9f41-44f5-9760-3977e7d75308	47723567-39d1-40e9-a8ea-1bf9548db03e	X	153586901	153586901	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.4510	p.D1504N	0.999	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	196	1	0.51	88	78	46.99	-	-	-	T	153586901	C	T	153586901	3	4	121	1	0	0	0	0	1	0	0	0	5979	826	29	2	3521	2	FLNA	23	153586901	Missense_Mutation	SNP	C	TCGA-A7-A0DA-01A-31D-A10Y-09	22384304	153586901	1683659	121	7417										
THEM5	0	genome.wustl.edu	37	chr1	151819728	151819728	+	Frame_Shift_Del	DEL	A	A	-													0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	caggggaggcaggaggcaggAggcaggcaggggaggcagga							TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	1	151819728	151819728	A	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.651	p.P218fs	0.690	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	33	0	0	33	4	10.81	-	-	-	-	151819728	A	-	151819728	7	5	122	1	0	1	0	1	0	0	0	0	15954	319	11	0		0	THEM5	1	151819728	Frame_Shift_Del	DEL	A	TCGA-A7-A0DB-01A-11D-A272-09		151819728	97430893	1	7418										
HRNR	0	genome.wustl.edu	37	chr1	152188847	152188847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	cagactcatgttgaccaaagAcagaagagtgacccgagcga	11	10	1	6			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	1	152188847	152188847	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5258	p.V1753A	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	25	0	0	50	11	18.03	-	-	-	G	152188847	A	G	152188847	3	3	122	1	0	0	0	0	1	0	0	0	7410	275	10	5	3298	5	HRNR	1	152188847	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09	369119	152188847	97061774	2	7419										
LCE3D	0	genome.wustl.edu	37	chr1	152552176	152552176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tggccgcagccagagcccccGccttgctgaccactgcccct	10	20	0	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	1	152552176	152552176	G	A	SNP	LCE3D	ENST00000368787	human	ensembl	69_37n	-1	known	silent	c.237	p.G79	0.026	NULL	NULL	-	no_errors	LCE3D	HGNC	ENSG00000163202	80	0	0	109	23	17.42	-	-	-	A	152552176	G	A	152552176	2	1	122	1	0	0	0	0	0	0	0	1	8726	1074	38	1		1	LCE3D	1	152552176	Silent	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	363329	152552176	96698445	3	7420										
SPTA1	0	genome.wustl.edu	37	chr1	158608014	158608014	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	aaatcttcagccaatgtattCaggtccttgagtgcatccta	7	10	3	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	1	158608014	158608014	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.4998	p.L1666	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	37	0	0	31	4	11.43	-	-	-	T	158608014	C	T	158608014	2	4	122	1	0	0	0	0	0	0	0	1	15207	813	29	2		2	SPTA1	1	158608014	Silent	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	6055838	158608014	90642607	4	7421										
HEATR1	0	genome.wustl.edu	37	chr1	236715300	236715300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ggaatagtttgggaattaccTtccatcaactctgctaagaa	8	8	2	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	1	236715300	236715300	T	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.6345	p.E2115D	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	39	0	0	66	10	13.16	-	-	-	G	236715300	T	G	236715300	3	3	122	1	0	0	0	0	1	0	0	0	7078	1623	56	5	97	5	HEATR1	1	236715300	Missense_Mutation	SNP	T	TCGA-A7-A0DB-01A-11D-A272-09	78107286	236715300	12535321	5	7422										
SLC9A2	0	genome.wustl.edu	37	chr2	103300760	103300760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	aaaaattgtttattacggctGccattgttgtcatattcttt	6	6	2	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	2	103300760	103300760	G	T	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.1390	p.A464S	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	114	0	0	95	21	18.1	-	-	-	T	103300760	G	T	103300760	3	4	122	1	0	0	0	0	1	0	0	0	14801	1319	46	4	1408	4	SLC9A2	2	103300760	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		103300760	139898613	6	7423										
BAZ2B	0	genome.wustl.edu	37	chr2	160317645	160317645	+	RNA	DEL	T	T	-													0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	agaactgaagcacaaacacgTtttttttttacatgtatgtg							TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	2	160317645	160317645	T	-	DEL	BAZ2B	ENST00000483316	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	15	0	0	15	3	16.67	-	-	-	-	160317645	T	-	160317645	6	5	122	0	1	1	0	1	0	0	0	0	1336	1740	60	0		0	BAZ2B	2	160317645	RNA	DEL	T	TCGA-A7-A0DB-01A-11D-A272-09	57016885	160317645	82881728	7	7424										
SCN2A	0	genome.wustl.edu	37	chr2	166245948	166245948	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	agatggatgcccttcgaataCagatggaagagcgattcatg	12	7	1	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	2	166245948	166245948	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.5632	p.Q1878K	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	23	0	0	30	6	16.67	-	-	-	A	166245948	C	A	166245948	3	1	122	1	0	0	0	0	1	0	0	0	14004	479	17	4	5830	4	SCN2A	2	166245948	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	5928303	166245948	76953425	8	7425										
NGEF	0	genome.wustl.edu	37	chr2	233839577	233839577	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ttcctccgggtcttttccaaAtcttcagattccctggtctc	6	14	4	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	2	233839577	233839577	A	G	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	silent	c.24	p.D8	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	41	0	0	32	9	21.95	-	-	-	G	233839577	A	G	233839577	2	3	122	1	0	0	0	0	0	0	0	1	10466	98	4	5		5	NGEF	2	233839577	Silent	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09	67593629	233839577	9359796	9	7426										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	19	0	0	20	10	33.33	-	-	-	G	178952085	A	G	178952085	3	3	122	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09		178952085	19070345	10	7427										
KLHL8	0	genome.wustl.edu	37	chr4	88106756	88106756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ggctgcatataagagaggctGgacattgtcaacagtcaaag	12	7	2	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	4	88106756	88106756	G	T	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.412	p.Q138K	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	31	0	0	30	4	11.76	-	-	-	T	88106756	G	T	88106756	3	4	122	1	0	0	0	0	1	0	0	0	8448	1357	47	4	1482	4	KLHL8	4	88106756	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		88106756	103047520	11	7428										
NUDT6	0	genome.wustl.edu	37	chr4	123814028	123814028	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	taattctctggcagttccttAtgatagagtttataaaacag	7	6	1	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	4	123814028	123814028	A	G	SNP	NUDT6	ENST00000304430	human	ensembl	69_37n	-1	known	silent	c.906	p.H302	1.000	superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917	22	0	0	32	15	31.91	-	-	-	G	123814028	A	G	123814028	2	3	122	1	0	0	0	0	0	0	0	1	10816	446	16	5		5	NUDT6	4	123814028	Silent	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09	35707272	123814028	67340248	12	7429										
MAP3K1	0	genome.wustl.edu	37	chr5	56167801	56167802	+	Frame_Shift_Ins	INS	-	-	T													0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	catgcttgatgaagaaagtcINSttacagtgtgtgaagacggc							TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	5	56167801	56167802	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1366_1367	p.T457fs	0.999:0.992	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	17	0	0	20	10	33.33	-	-	-	T	56167802	-	T	56167801	7	5	122	1	0	1	1	0	0	0	0	0	9314	913	32	0	1392	0	MAP3K1	5	56167801	Frame_Shift_Ins	INS	-	TCGA-A7-A0DB-01A-11D-A272-09		56167801	124747459	13	7430										
MAP3K1	0	genome.wustl.edu	37	chr5	56174851	56174852	+	Frame_Shift_Ins	INS	-	-	GC													0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	atactccttgccacagtttaINSgcggaaagaatcaaacttca							TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	5	56174851	56174852	-	GC	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.2010_2011	p.E671fs	0.964:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	21	0	0	29	11	27.5	-	-	-	GC	56174852	-	GC	56174851	7	5	122	1	0	1	1	0	0	0	0	0	9314	417	15	0	2052	0	MAP3K1	5	56174851	Frame_Shift_Ins	INS	-	TCGA-A7-A0DB-01A-11D-A272-09	7050	56174851	124740409	14	7431										
BDP1	0	genome.wustl.edu	37	chr5	70782424	70782424	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	atcacagtttaaaggagaagAaatccaccaaaccacggaaa	7	9	1	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	5	70782424	70782424	A	G	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.1183	p.K395E	0.991	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	34	0	0	45	7	13.46	-	-	-	G	70782424	A	G	70782424	3	3	122	1	0	0	0	0	1	0	0	0	1399	247	9	5	1217	5	BDP1	5	70782424	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09	14607573	70782424	110132836	15	7432										
PAM	0	genome.wustl.edu	37	chr5	102201820	102201820	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	atgaagtagcggctgctggcGgcgccgctgcccaaccgcca	14	15	0	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	5	102201820	102201820	G	A	SNP	PAM	ENST00000509523	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PAM	HGNC	ENSG00000145730	13	0	0	6	4	40	-	-	-	A	102201820	G	A	102201820	1	1	122	0	1	0	0	0	0	0	0	0	11485	1131	39	1		1	PAM	5	102201820	RNA	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	31419396	102201820	78713440	16	7433										
HIST1H2AH	0	genome.wustl.edu	37	chr6	27115267	27115267	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	gccgtgctgctgcctaagaaGactgagagccaccataaggc	12	12	0	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	6	27115267	27115267	G	A	SNP	HIST1H2AH	ENST00000377459	human	ensembl	69_37n	1	known	silent	c.360	p.K120	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AH	HGNC	ENSG00000184825	110	0	0	69	24	25.81	-	-	-	A	27115267	G	A	27115267	2	1	122	1	0	0	0	0	0	0	0	1	7185	933	33	2		2	HIST1H2AH	6	27115267	Silent	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		27115267	143999800	17	7434										
C7orf53	0	genome.wustl.edu	37	chr7	112124979	112124979	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	aaactaaacctctgtccagcCggatcgcagcatctgttccg	8	14	2	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	7	112124979	112124979	C	G	SNP	C7orf53	ENST00000312849	human	ensembl	69_37n	1	known	silent	c.108	p.A36	0.000	NULL	NULL	-	no_errors	C7orf53	HGNC	ENSG00000181016	19	0	0	41	10	19.61	-	-	-	G	112124979	C	G	112124979	2	3	122	1	0	0	0	0	0	0	0	1	2425	639	23	3		3	C7orf53	7	112124979	Silent	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09		112124979	47013684	18	7435										
LRRC14	0	genome.wustl.edu	37	chr8	145745252	145745252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	caagaagacagtggtactgcGcgagttggtacacacgtggc	14	9	0	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	8	145745252	145745252	G	A	SNP	LRRC14	ENST00000292524	human	ensembl	69_37n	1	known	missense	c.143	p.R48H	0.138	NULL	NULL	-	no_errors	LRRC14	HGNC	ENSG00000160959	102	0	0	50	19	27.54	-	-	-	A	145745252	G	A	145745252	3	1	122	1	0	0	0	0	1	0	0	0	9034	1087	38	1	145	1	LRRC14	8	145745252	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		145745252	618770	19	7436										
FOXD4L5	0	genome.wustl.edu	37	chr9	70177573	70177573	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tatgggaagcggccactaatGaaggcgcagatgccgctgag	15	9	0	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	9	70177573	70177573	G	A	SNP	FOXD4L5	ENST00000377420	human	ensembl	69_37n	-1	known	silent	c.411	p.F137	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779	56	0	0	43	13	23.21	-	-	-	A	70177573	G	A	70177573	2	1	122	1	0	0	0	0	0	0	0	1	6050	1281	45	2		2	FOXD4L5	9	70177573	Silent	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		70177573	71035858	20	7437										
C10orf99	0	genome.wustl.edu	37	chr10	85944486	85944486	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	aagcttgagccagagccccgCctttgggtggtgcctggggc	16	12	0	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	10	85944486	85944486	C	A	SNP	C10orf99	ENST00000372126	human	ensembl	69_37n	1	known	silent	c.210	p.R70	0.000	NULL	NULL	-	no_errors	C10orf99	HGNC	ENSG00000188373	38	0	0	36	4	10	-	-	-	A	85944486	C	A	85944486	2	1	122	1	0	0	0	0	0	0	0	1	1638	726	26	4		4	C10orf99	10	85944486	Silent	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09		85944486	49590261	21	7438										
FAM22D	0	genome.wustl.edu	37	chr10	89124859	89124859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ccgagaaacaacgggaagagGgcgaagtgaagcagccacag	15	9	0	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	10	89124859	89124859	G	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1417	p.G473S	0.001	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	9	0	0	5	5	50	-	-	-	A	89124859	G	A	89124859	3	1	122	1	0	0	0	0	1	0	0	0	5586	1232	43	4	1435	4	FAM22D	10	89124859	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	3180373	89124859	46409888	22	7439										
CCKBR	0	genome.wustl.edu	37	chr11	6291530	6291530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ggcctcgtgtgctgcagtgcGtgcatcgctggcccagtgcg	16	13	0	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	11	6291530	6291530	G	A	SNP	CCKBR	ENST00000525462	human	ensembl	69_37n	1	known	missense	c.616	p.V206M	0.421	pfam_7TM_GPCR_Rhodpsn,prints_Gastrin_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCKBR	HGNC	ENSG00000110148	28	0	0	20	11	35.48	-	-	-	A	6291530	G	A	6291530	3	1	122	1	0	0	0	0	1	0	0	0	2908	1145	40	1	626	1	CCKBR	11	6291530	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		6291530	128714986	23	7440										
UNC93B1	0	genome.wustl.edu	37	chr11	67759196	67759196	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	gtcctcctccaagtagcggtAaccgcgcaccttgtgctggg	12	14	0	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	11	67759196	67759196	A	C	SNP	UNC93B1	ENST00000227471	human	ensembl	69_37n	-1	known	missense	c.1612	p.Y538D	1.000	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	19	0	0	4	5	55.56	-	-	-	C	67759196	A	C	67759196	3	2	122	1	0	0	0	0	1	0	0	0	17094	362	13	5	182	5	UNC93B1	11	67759196	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09	61467666	67759196	67247320	24	7441										
WNT5B	0	genome.wustl.edu	37	chr12	1740546	1740546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	cagcctgctgctgctgttcaCggctgctctgctgtccagct	11	15	2	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	12	1740546	1740546	C	T	SNP	WNT5B	ENST00000310594	human	ensembl	69_37n	1	known	missense	c.26	p.T9M	0.092	NULL	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	58	0	0	42	20	32.26	-	-	-	T	1740546	C	T	1740546	3	4	122	1	0	0	0	0	1	0	0	0	17489	536	19	1	28	1	WNT5B	12	1740546	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09		1740546	132111349	25	7442										
CD163L1	0	genome.wustl.edu	37	chr12	7527952	7527952	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tgtcatttgacagttatccaGaagtgactcattccctaagc	7	10	2	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	12	7527952	7527952	G	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.2926	p.L976M	0.015	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	59	0	0	49	25	33.78	-	-	-	T	7527952	G	T	7527952	3	4	122	1	0	0	0	0	1	0	0	0	2997	933	33	2	1471	2	CD163L1	12	7527952	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	5787406	7527952	126323943	26	7443										
SYNE2	0	genome.wustl.edu	37	chr14	64447873	64447873	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	gcttgctttgaggagacaaaGaaggaagaaattaaagaggt	13	3	0	5			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	14	64447873	64447873	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.1818	p.K606N	0.871	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	24	0	0	32	4	11.11	-	-	-	C	64447873	G	C	64447873	3	2	122	1	0	0	0	0	1	0	0	0	15538	933	33	2	1876	2	SYNE2	14	64447873	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		64447873	42901667	27	7444										
SYNE2	0	genome.wustl.edu	37	chr14	64580096	64580096	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tgaggctgacactctggactCttctgacgcgcaaggaggtt	13	10	3	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	14	64580096	64580096	C	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.12647	p.S4216C	0.856	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	52	0	0	32	18	36	-	-	-	G	64580096	C	G	64580096	3	3	122	1	0	0	0	0	1	0	0	0	15538	913	32	2	12905	2	SYNE2	14	64580096	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	132223	64580096	42769444	28	7445										
YLPM1	0	genome.wustl.edu	37	chr14	75283664	75283664	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	atgaatatgaagctgagatgGaggagacttaccgcaccagc	12	8	0	4			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	14	75283664	75283664	G	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.5716	p.E1906Q	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	48	0	0	53	8	13.11	-	-	-	C	75283664	G	C	75283664	3	2	122	1	0	0	0	0	1	0	0	0	17583	1175	41	2	5770	2	YLPM1	14	75283664	Missense_Mutation	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	10703568	75283664	32065876	29	7446										
MC1R	0	genome.wustl.edu	37	chr16	89981358	89981358	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tgcacatttgtgtgtgtgtgTgcctgtgtgtgtgggtgcac	16	6	0	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	16	89981358	89981358	T	C	SNP	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	69	0	0	35	4	10.26	-	-	-	C	89981358	T	C	89981358	1	2	122	0	1	0	0	0	0	0	0	0	9434	1711	59	5		5	MC1R	16	89981358	RNA	SNP	T	TCGA-A7-A0DB-01A-11D-A272-09		89981358	373395	30	7447										
TANC2	0	genome.wustl.edu	37	chr17	61315386	61315386	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ttggaaacagtgttatctcaAtcagtacagtctattccttt	6	8	3	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	17	61315386	61315386	A	G	SNP	TANC2	ENST00000583356	human	ensembl	69_37n	1	putative	missense	c.545	p.N182S	0.387	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	73	0	0	76	12	13.64	-	-	-	G	61315386	A	G	61315386	3	3	122	1	0	0	0	0	1	0	0	0	15637	98	4	5	781	5	TANC2	17	61315386	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09		61315386	19879824	31	7448										
FBN3	0	genome.wustl.edu	37	chr19	8130997	8130997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	catgcgaaagaaaccttgctCgtttccgcggacgatgacgt	11	11	0	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	8130997	8130997	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.8236	p.E2746K	0.001	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	29	0	0	19	30	61.22	-	-	-	T	8130997	C	T	8130997	3	4	122	1	0	0	0	0	1	0	0	0	5750	893	31	1	197	1	FBN3	19	8130997	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09		8130997	50997986	32	7449										
USHBP1	0	genome.wustl.edu	37	chr19	17362429	17362429	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tccctgttcagctcggcactCtgagaccgtctggctcgccc	10	17	3	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	17362429	17362429	C	G	SNP	USHBP1	ENST00000252597	human	ensembl	69_37n	-1	known	missense	c.1884	p.Q628H	0.925	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	45	0	0	35	6	14.63	-	-	-	G	17362429	C	G	17362429	3	3	122	1	0	0	0	0	1	0	0	0	17134	912	32	2	235	2	USHBP1	19	17362429	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	9231432	17362429	41766554	33	7450										
ZNF506	0	genome.wustl.edu	37	chr19	19906463	19906463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ggtcttgggcaaaatgagaaTacataactgaaagaaacaat	9	5	1	3			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	19906463	19906463	T	C	SNP	ZNF506	ENST00000443905	human	ensembl	69_37n	-1	known	missense	c.233	p.Y78C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665	76	0	0	86	25	22.52	-	-	-	C	19906463	T	C	19906463	3	2	122	1	0	0	0	0	1	0	0	0	18048	1406	49	5	1105	5	ZNF506	19	19906463	Missense_Mutation	SNP	T	TCGA-A7-A0DB-01A-11D-A272-09	2544034	19906463	39222520	34	7451										
CEACAM20	0	genome.wustl.edu	37	chr19	45010264	45010264	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ttgggctctggattcacaagCtcctgttaaacaaagagaaa	9	8	2	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	45010264	45010264	C	G	SNP	CEACAM20	ENST00000412211	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	81	0	0	69	20	22.47	-	-	-	G	45010264	C	G	45010264	1	3	122	0	1	0	0	0	0	0	0	0	3220	796	28	4		4	CEACAM20	19	45010264	RNA	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	25103801	45010264	14118719	35	7452										
ZNF432	0	genome.wustl.edu	37	chr19	52537525	52537525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tgatgtacaatcagccgactCttcaaggggaagcctttccc	9	12	3	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	52537525	52537525	C	G	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.1407	p.K469N	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	77	0	0	74	9	10.84	-	-	-	G	52537525	C	G	52537525	3	3	122	1	0	0	0	0	1	0	0	0	18002	912	32	2	555	2	ZNF432	19	52537525	Missense_Mutation	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	7527261	52537525	6591458	36	7453										
ZNF749	0	genome.wustl.edu	37	chr19	57956493	57956493	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tacaaactcattattcatcaGagagttcatactggagaaaa	6	7	4	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	19	57956493	57956493	G	A	SNP	ZNF749	ENST00000334181	human	ensembl	69_37n	1	known	silent	c.1977	p.Q659	0.020	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	16	0	0	27	10	27.03	-	-	-	A	57956493	G	A	57956493	2	1	122	1	0	0	0	0	0	0	0	1	18225	933	33	2		2	ZNF749	19	57956493	Silent	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09	5418968	57956493	1172490	37	7454										
TMEM189-UBE2V1	0	genome.wustl.edu	37	chr20	48700722	48700722	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	ttttgttacaaatcttacaaAggggggtgcttctgggtatt	11	5	2	0			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	20	48700722	48700722	A	C	SNP	TMEM189-UBE2V1	ENST00000341698	human	ensembl	69_37n	-1	known	missense	c.910	p.F304V	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_KuaUb-conj-enz_UEV1,pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	TMEM189-UBE2V1	HGNC	ENSG00000124208	35	0	0	23	22	48.89	-	-	-	C	48700722	A	C	48700722	3	2	122	1	0	0	0	0	1	0	0	0	16207	72	3	5	210	5	TMEM189-UBE2V1	20	48700722	Missense_Mutation	SNP	A	TCGA-A7-A0DB-01A-11D-A272-09		48700722	14324798	38	7455										
PDHA1	0	genome.wustl.edu	37	chrX	19362212	19362212	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	tctggcgcttctcagaagccGgtgagacctcccgggcgggc	15	14	2	2			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	X	19362212	19362212	G	A	SNP	PDHA1	ENST00000379806	human	ensembl	69_37n	1	known	silent	c.57	p.P19	1.000	NULL	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828	22	0	0	10	9	47.37	-	-	-	A	19362212	G	A	19362212	2	1	122	1	0	0	0	0	0	0	0	1	11737	1130	39	1		1	PDHA1	23	19362212	Silent	SNP	G	TCGA-A7-A0DB-01A-11D-A272-09		19362212	135908348	39	7456										
NUDT11	0	genome.wustl.edu	37	chrX	51238952	51238952	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	8	0.0308748744442734	2.68828828828829	3.84041184041184	2.06791406791407	1	1	5	actttgaaccactctcgcttCctcccaatgctaaccgaatc	4	16	1	1			TCGA-A7-A0DB-01A-11D-A272-09	TCGA-A7-A0DB-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0fd4e0e-e23b-46f0-a8d9-17d3c0235cf1	b9e04a17-821c-4e9f-a161-459e74727817	X	51238952	51238952	C	T	SNP	NUDT11	ENST00000375992	human	ensembl	69_37n	-1	known	silent	c.345	p.R115	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT11	HGNC	ENSG00000196368	67	0	0	57	34	37.36	-	-	-	T	51238952	C	T	51238952	2	4	122	1	0	0	0	0	0	0	0	1	10800	854	30	2		2	NUDT11	23	51238952	Silent	SNP	C	TCGA-A7-A0DB-01A-11D-A272-09	31876740	51238952	104031608	40	7457										
NF1	0	genome.wustl.edu	37	chr17	29483100	29483100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	NA	NA	NA	1	1	0	ccaaatacaagttttctttgGttataagcggcctcactact	6	10	2	0			TCGA-A7-A0DC-01B-04D-A22N-09	TCGA-A7-A0DC-10A-01X-A025-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	532e757d-f1f4-49a8-8b7b-942f55f98d0a	9e5d8dab-ccaa-41b2-81d8-f1d28a027156	17	29483100	29483100	G	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.160	p.V54F	1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	81	0	0	80	55	40.74	-	-	-	T	29483100	G	T	29483100	3	4	123	1	0	0	0	0	1	0	0	0	10428	1261	44	4	166	4	NF1	17	29483100	Missense_Mutation	SNP	G	TCGA-A7-A0DC-01B-04D-A22N-09		29483100	51712110	1	7458										
SPEN	0	genome.wustl.edu	37	chr1	16261459	16261459	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gtgaaggccgataggccatcCttggagaagcccgagcccat	13	12	0	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	16261459	16261459	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.8724	p.S2908	0.049	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	13	0	0	7	6	46.15	-	-	-	T	16261459	C	T	16261459	2	4	124	1	0	0	0	0	0	0	0	1	15129	668	24	4		4	SPEN	1	16261459	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09		16261459	232989162	1	7459										
EPHB2	0	genome.wustl.edu	37	chr1	23236889	23236889	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tcccaggtaatcaatgccatTgagcaggactatcggctgcc	10	12	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	23236889	23236889	T	G	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	missense	c.2517	p.I839M	0.736	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	49	0	0	20	6	23.08	-	-	-	G	23236889	T	G	23236889	3	3	124	1	0	0	0	0	1	0	0	0	5212	1800	63	5	2574	5	EPHB2	1	23236889	Missense_Mutation	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	6975430	23236889	226013732	2	7460										
IL22RA1	0	genome.wustl.edu	37	chr1	24448186	24448186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gggatcaggacgtgctcctgGatgaagcgcagcggctggaa	17	9	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	24448186	24448186	G	C	SNP	IL22RA1	ENST00000270800	human	ensembl	69_37n	-1	known	missense	c.834	p.I278M	1.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677	28	0	0	12	6	33.33	-	-	-	C	24448186	G	C	24448186	3	2	124	1	0	0	0	0	1	0	0	0	7727	1164	41	2	894	2	IL22RA1	1	24448186	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	1211297	24448186	224802435	3	7461										
BAI2	0	genome.wustl.edu	37	chr1	32203298	32203298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gcagggtgagcagcgccatgCacgacactgcacagccgatc	13	14	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	32203298	32203298	C	G	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	missense	c.2831	p.C944S	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	29	0	0	17	10	37.04	-	-	-	G	32203298	C	G	32203298	3	3	124	1	0	0	0	0	1	0	0	0	1303	710	25	4	1986	4	BAI2	1	32203298	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	7755112	32203298	217047323	4	7462										
SYNC	0	genome.wustl.edu	37	chr1	33160479	33160479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ggcctaccctgtactgctgcAcctcttcatctcgtttttgc	7	15	3	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	33160479	33160479	A	G	SNP	SYNC	ENST00000409190	human	ensembl	69_37n	-1	known	missense	c.1220	p.V407A	1.000	pfam_F	pfam_F	-	no_errors	SYNC	HGNC	ENSG00000162520	56	0	0	38	19	33.33	-	-	-	G	33160479	A	G	33160479	3	3	124	1	0	0	0	0	1	0	0	0	15535	159	6	5	306	5	SYNC	1	33160479	Missense_Mutation	SNP	A	TCGA-A7-A13D-01A-13D-A272-09	957181	33160479	216090142	5	7463										
ZC3H12A	0	genome.wustl.edu	37	chr1	37949403	37949403	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tctggcccatgcagcacctcTagctgtctgcctcagtgggt	11	14	4	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	37949403	37949403	T	C	SNP	ZC3H12A	ENST00000492829	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	8	0	0	5	4	44.44	-	-	-	C	37949403	T	C	37949403	1	2	124	0	1	0	0	0	0	0	0	0	17657	1537	53	5		5	ZC3H12A	1	37949403	RNA	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	4788924	37949403	211301218	6	7464										
MACF1	0	genome.wustl.edu	37	chr1	39799297	39799297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gacttgtgagtctttgacaaCtgaagaagtcattaatgaag	10	5	2	5			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	39799297	39799297	C	T	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.7148	p.T2383I	1.000	superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	56	0	0	42	26	38.24	-	-	-	T	39799297	C	T	39799297	3	4	124	1	0	0	0	0	1	0	0	0	9211	565	20	4	7128	4	MACF1	1	39799297	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	1849894	39799297	209451324	7	7465										
LRRC8C	0	genome.wustl.edu	37	chr1	90152042	90152042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ttctcagaaacatgattcccGtgacagaattccggcagttc	8	11	1	4			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	90152042	90152042	G	A	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.10	p.V4M	0.999	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	63	0	0	27	9	25	-	-	-	A	90152042	G	A	90152042	3	1	124	1	0	0	0	0	1	0	0	0	9089	1145	40	1	12	1	LRRC8C	1	90152042	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	50352745	90152042	159098579	8	7466										
PRPF38B	0	genome.wustl.edu	37	chr1	109241420	109241423	+	Frame_Shift_Del	DEL	AGAC	AGAC	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaggaaggtgctgaggaaatAgacagacatgttgaacgcag							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	AGAC	AGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	109241420	109241423	AGAC	-	DEL	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	frame_shift_del	c.753_756	p.R253fs	1.000:1.000:1.000:0.998	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	29	0	0	25	11	30.56	-	-	-	-	109241423	AGAC	-	109241420	7	5	124	1	0	1	0	1	0	0	0	0	12649	410	15	0	771	0	PRPF38B	1	109241420	Frame_Shift_Del	DEL	AGAC	TCGA-A7-A13D-01A-13D-A272-09	19089378	109241420	140009201	9	7467										
TTF2	0	genome.wustl.edu	37	chr1	117620594	117620594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaatcacaagtgaagccatcGgtcaactgcatcgctcactt	7	12	3	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	117620594	117620594	G	A	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	missense	c.1630	p.G544S	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	65	0	0	41	9	18	-	-	-	A	117620594	G	A	117620594	3	1	124	1	0	0	0	0	1	0	0	0	16816	1116	39	1	1660	1	TTF2	1	117620594	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	8379174	117620594	131630027	10	7468										
FLG2	0	genome.wustl.edu	37	chr1	152329634	152329634	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	agaagggctaatgtgtgactTgtttattctttctctcagtt	9	6	3	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	152329634	152329634	T	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	nonsense	c.628	p.K210*	0.804	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	96	0	0	83	15	15.31	-	-	-	A	152329634	T	A	152329634	4	1	124	1	0	0	0	0	0	1	0	0	5969	1821	63	5	6551	5	FLG2	1	152329634	Nonsense_Mutation	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	34709040	152329634	96920987	11	7469										
NME7	0	genome.wustl.edu	37	chr1	169256497	169256497	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atcaagaaaataaacattgcTctcctattaacaaaatgtac	3	8	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	169256497	169256497	T	A	SNP	NME7	ENST00000469474	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.137	-	-	-	no_errors	NME7	HGNC	ENSG00000143156	26	0	0	15	9	37.5	-	-	-	A	169256497	T	A	169256497	1	1	124	0	1	0	0	0	0	0	0	0	10568	1566	54	5		5	NME7	1	169256497	RNA	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	16926863	169256497	79994124	12	7470										
ATF3	0	genome.wustl.edu	37	chr1	212791561	212791561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aacaagaagaaggagaagacGgagtgcctgcagaaagtgag	15	5	0	6			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	212791561	212791561	G	A	SNP	ATF3	ENST00000341491	human	ensembl	69_37n	1	known	silent	c.333	p.T111	0.349	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772	34	0	0	10	5	33.33	-	-	-	A	212791561	G	A	212791561	2	1	124	1	0	0	0	0	0	0	0	1	1085	1103	39	1		1	ATF3	1	212791561	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	43535064	212791561	36459060	13	7471										
ARID4B	0	genome.wustl.edu	37	chr1	235345422	235345422	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaaaagctctttcagcgtttTtttaggccactgtccctgaa	7	10	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	235345422	235345422	T	G	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.2812	p.K938Q	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	63	0	0	56	47	45.63	-	-	-	G	235345422	T	G	235345422	3	3	124	1	0	0	0	0	1	0	0	0	922	1850	64	5	1146	5	ARID4B	1	235345422	Missense_Mutation	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	22553861	235345422	13905199	14	7472										
RGS7	0	genome.wustl.edu	37	chr1	240966282	240966282	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gaatcacttttcatcagtttGtaaatgtgctcctaaaaaga	6	7	3	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	1	240966282	240966282	G	C	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	nonsense	c.1281	p.Y427*	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	87	0	0	113	23	16.91	-	-	-	C	240966282	G	C	240966282	4	2	124	1	0	0	0	0	0	1	0	0	13394	1372	48	4	194	4	RGS7	1	240966282	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	5620860	240966282	8284339	15	7473										
AUP1	0	genome.wustl.edu	37	chr2	74756062	74756062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ggggggactattgagtagagGctgggaaccaggagaagaga	19	4	0	4			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	74756062	74756062	G	A	SNP	AUP1	ENST00000377526	human	ensembl	69_37n	-1	known	missense	c.340	p.P114S	1.000	NULL	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307	45	0	0	18	14	43.75	-	-	-	A	74756062	G	A	74756062	3	1	124	1	0	0	0	0	1	0	0	0	1224	1217	42	4	928	4	AUP1	2	74756062	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		74756062	168443311	16	7474										
ANKRD23	0	genome.wustl.edu	37	chr2	97490563	97490563	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tctgcctggggggccttgtgCagatgggcatgagcccactg	16	11	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	97490563	97490563	C	T	SNP	ANKRD23	ENST00000476975	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD23	HGNC	ENSG00000163126	83	0	0	62	7	10.14	-	-	-	T	97490563	C	T	97490563	1	4	124	0	1	0	0	0	0	0	0	0	652	725	25	4		4	ANKRD23	2	97490563	RNA	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	22734501	97490563	145708810	17	7475										
CDCA7	0	genome.wustl.edu	37	chr2	174224156	174224156	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aacgaactggccggtattttTcatgccgactctgacgatga	10	10	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	174224156	174224156	T	C	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	silent	c.321	p.F107	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	100	0	0	106	17	13.82	-	-	-	C	174224156	T	C	174224156	2	2	124	1	0	0	0	0	0	0	0	1	3119	1780	62	5		5	CDCA7	2	174224156	Silent	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	76733593	174224156	68975217	18	7476										
CDCA7	0	genome.wustl.edu	37	chr2	174224198	174224198	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tcattttgcggtttctcagaGagtgagatacaagatggaat	11	5	2	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	174224198	174224198	G	A	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	silent	c.363	p.E121	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	95	0	0	90	13	12.62	-	-	-	A	174224198	G	A	174224198	2	1	124	1	0	0	0	0	0	0	0	1	3119	933	33	2		2	CDCA7	2	174224198	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	42	174224198	68975175	19	7477										
FKBP7	0	genome.wustl.edu	37	chr2	179343153	179343153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgctctcctctttcttttgtCtctgagcagtaaaaaggccc	7	12	4	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	179343153	179343153	C	G	SNP	FKBP7	ENST00000424785	human	ensembl	69_37n	-1	known	missense	c.74	p.R25T	0.129	NULL	pfam_PPIase_FKBP_dom,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP7	HGNC	ENSG00000079150	36	0	0	55	9	14.06	-	-	-	G	179343153	C	G	179343153	3	3	124	1	0	0	0	0	1	0	0	0	5959	913	32	2	610	2	FKBP7	2	179343153	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	5118955	179343153	63856220	20	7478										
SLC23A3	0	genome.wustl.edu	37	chr2	220032945	220032945	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gccggaagacagggagaggaGtgtgagttgatgacgttgaa	18	4	0	6			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	220032945	220032945	G	C	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.794	p.T265S	0.001	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	47	0	0	21	6	22.22	-	-	-	C	220032945	G	C	220032945	3	2	124	1	0	0	0	0	1	0	0	0	14553	1029	36	4	1090	4	SLC23A3	2	220032945	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	40689792	220032945	23166428	21	7479										
NGEF	0	genome.wustl.edu	37	chr2	233785249	233785249	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tcctgttgcctcctggtttcGatttcttggagagtcgattt	10	9	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	2	233785249	233785249	G	A	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	silent	c.573	p.I191	0.850	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	115	0	0	34	16	32	-	-	-	A	233785249	G	A	233785249	2	1	124	1	0	0	0	0	0	0	0	1	10466	1048	37	1		1	NGEF	2	233785249	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	13752304	233785249	9414124	22	7480										
GHRL	0	genome.wustl.edu	37	chr3	10328735	10328735	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gcactctcatgcctctcagcCttagcctctaatgggattgc	8	14	3	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	3	10328735	10328735	C	G	SNP	GHRL	ENST00000475759	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GHRL	HGNC	ENSG00000157017	71	0	0	42	10	19.23	-	-	-	G	10328735	C	G	10328735	1	3	124	0	1	0	0	0	0	0	0	0	6426	696	24	4		4	GHRL	3	10328735	RNA	SNP	C	TCGA-A7-A13D-01A-13D-A272-09		10328735	187693695	23	7481										
CELSR3	0	genome.wustl.edu	37	chr3	48694701	48694701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ccacatgttctcaaggcgcaCggtcaggctgttggccagca	12	13	2	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	3	48694701	48694701	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.3829	p.V1277M	1.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	33	0	0	32	5	13.51	-	-	-	T	48694701	C	T	48694701	3	4	124	1	0	0	0	0	1	0	0	0	3252	536	19	1	6245	1	CELSR3	3	48694701	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	38365966	48694701	149327729	24	7482										
ADCY5	0	genome.wustl.edu	37	chr3	123021902	123021902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	agcccctgtgcacccagtacCtcggggaagttgcagttggg	14	12	0	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	3	123021902	123021902	C	A	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.2724	p.E908D	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	71	0	0	51	11	17.74	-	-	-	A	123021902	C	A	123021902	3	1	124	1	0	0	0	0	1	0	0	0	297	695	24	4	1093	4	ADCY5	3	123021902	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	74327201	123021902	75000528	25	7483										
EHHADH	0	genome.wustl.edu	37	chr3	184911054	184911054	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctcaaatactgcttcaatgaCtaaatctacaccaccaagct	3	13	3	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	3	184911054	184911054	C	G	SNP	EHHADH	ENST00000231887	human	ensembl	69_37n	-1	known	missense	c.1132	p.V378L	1.000	pfam_3-OHacyl-CoA_DH_NAD-bd	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790	93	0	0	53	32	37.65	-	-	-	G	184911054	C	G	184911054	3	3	124	1	0	0	0	0	1	0	0	0	5017	565	20	4	1043	4	EHHADH	3	184911054	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	61889152	184911054	13111376	26	7484										
FYTTD1	0	genome.wustl.edu	37	chr3	197505308	197505308	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cctaaaggtgttcccctgcaGtttgacataaacagtgtcgg	10	10	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	3	197505308	197505308	G	A	SNP	FYTTD1	ENST00000241502	human	ensembl	69_37n	1	known	silent	c.831	p.Q277	1.000	pfam_DUF1346	pfam_DUF1346	-	no_errors	FYTTD1	HGNC	ENSG00000122068	89	0	0	54	21	28	-	-	-	A	197505308	G	A	197505308	2	1	124	1	0	0	0	0	0	0	0	1	6176	1020	36	4		4	FYTTD1	3	197505308	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	12594254	197505308	517122	27	7485										
CRMP1	0	genome.wustl.edu	37	chr4	5844877	5844877	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gtgatgcccatctccaggatCcgcttttgttcctacaagac	8	13	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	4	5844877	5844877	C	T	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	silent	c.975	p.R325	0.907	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	51	0	0	28	4	12.5	-	-	-	T	5844877	C	T	5844877	2	4	124	1	0	0	0	0	0	0	0	1	3920	842	30	2		2	CRMP1	4	5844877	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09		5844877	185309399	28	7486										
PDCD6	0	genome.wustl.edu	37	chr5	314701	314701	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cagttcctatctgtgagggaAtggagcacaggtgcagttag	14	7	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	5	314701	314701	A	G	SNP	PDCD6	ENST00000502359	human	ensembl	69_37n	1	putative	missense	c.329	p.N110S	0.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PDCD6	HGNC	ENSG00000249915	63	0	0	42	52	55.32	-	-	-	G	314701	A	G	314701	3	3	124	1	0	0	0	0	1	0	0	0	11696	116	4	5		5	PDCD6	5	314701	Missense_Mutation	SNP	A	TCGA-A7-A13D-01A-13D-A272-09		314701	180600559	29	7487										
F2R	0	genome.wustl.edu	37	chr5	76029028	76029028	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgcatcttcatcatttgcttCggacccacaaacgtcctcct	5	15	3	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	5	76029028	76029028	C	G	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	missense	c.978	p.F326L	0.998	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	109	0	0	45	11	19.64	-	-	-	G	76029028	C	G	76029028	3	3	124	1	0	0	0	0	1	0	0	0	5380	883	31	3	984	3	F2R	5	76029028	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	75714327	76029028	104886232	30	7488										
AFF4	0	genome.wustl.edu	37	chr5	132228002	132228002	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctgactaatagtcctcttccGagagccatgctctgtttttg	8	11	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	5	132228002	132228002	G	C	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	missense	c.2491	p.R831G	0.998	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	54	0	0	31	27	46.55	-	-	-	C	132228002	G	C	132228002	3	2	124	1	0	0	0	0	1	0	0	0	359	1057	37	3	1036	3	AFF4	5	132228002	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	56198974	132228002	48687258	31	7489										
FAM13B	0	genome.wustl.edu	37	chr5	137289955	137289955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	actgcggtgtgataatactgGaggacagtcctcttccaagg	12	9	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	5	137289955	137289955	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.1552	p.P518S	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	42	0	0	14	15	51.72	-	-	-	A	137289955	G	A	137289955	3	1	124	1	0	0	0	0	1	0	0	0	5493	1174	41	2	1235	2	FAM13B	5	137289955	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	5061953	137289955	43625305	32	7490										
NMUR2	0	genome.wustl.edu	37	chr5	151784051	151784051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaattgtagatccacatgggCttgatgaccgtacaggtggc	12	8	0	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	5	151784051	151784051	C	A	SNP	NMUR2	ENST00000255262	human	ensembl	69_37n	-1	known	missense	c.624	p.K208N	0.963	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911	114	0	0	29	13	30.95	-	-	-	A	151784051	C	A	151784051	3	1	124	1	0	0	0	0	1	0	0	0	10579	796	28	4	639	4	NMUR2	5	151784051	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	14494096	151784051	29131209	33	7491										
TUBB	0	genome.wustl.edu	37	chr6	30691194	30691194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tggttgattctgtcctggatGtggtacggaaggaggcagag	17	5	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	6	30691194	30691194	G	A	SNP	TUBB	ENST00000327892	human	ensembl	69_37n	1	known	missense	c.355	p.V119M	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB	HGNC	ENSG00000196230	116	0	0	30	29	49.15	-	-	-	A	30691194	G	A	30691194	3	1	124	1	0	0	0	0	1	0	0	0	16849	1377	48	4	369	4	TUBB	6	30691194	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		30691194	140423873	34	7492										
GCLC	0	genome.wustl.edu	37	chr6	53373506	53373506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gggagatgcagcactcaaagCcatctaaaaacaaacaaaag	8	9	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	6	53373506	53373506	C	G	SNP	GCLC	ENST00000229416	human	ensembl	69_37n	-1	known	missense	c.832	p.A278P	1.000	pfam_GCS	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084	23	0	0	13	16	55.17	-	-	-	G	53373506	C	G	53373506	3	3	124	1	0	0	0	0	1	0	0	0	6345	739	26	4	1117	4	GCLC	6	53373506	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	22682312	53373506	117741561	35	7493										
ZNF451	0	genome.wustl.edu	37	chr6	56955148	56955148	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgttttctgcggtctgaggcCtggtgctccgtcgcagcctc	13	13	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	6	56955148	56955148	C	T	SNP	ZNF451	ENST00000477046	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.763	-	-	-	no_errors	ZNF451	HGNC	ENSG00000112200	136	0	0	67	16	19.28	-	-	-	T	56955148	C	T	56955148	1	4	124	0	1	0	0	0	0	0	0	0	18018	696	24	4		4	ZNF451	6	56955148	RNA	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	3581642	56955148	114159919	36	7494										
RGS17	0	genome.wustl.edu	37	chr6	153345454	153345454	+	Frame_Shift_Del	DEL	A	A	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atcatcctagccttttcttcAattacttttttgttctgctc							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	6	153345454	153345454	A	-	DEL	RGS17	ENST00000206262	human	ensembl	69_37n	-1	known	frame_shift_del	c.387	p.I129fs	0.949	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS17	HGNC	ENSG00000091844	42	0	0	10	26	70.27	-	-	-	-	153345454	A	-	153345454	7	5	124	1	0	1	0	1	0	0	0	0	13383	126	5	0	253	0	RGS17	6	153345454	Frame_Shift_Del	DEL	A	TCGA-A7-A13D-01A-13D-A272-09	96390306	153345454	17769613	37	7495										
RPS6KA2	0	genome.wustl.edu	37	chr6	166918092	166918092	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aacttgacatcctcctccgtGaacatgacctagtaagaaaa	6	11	0	4			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	6	166918092	166918092	G	C	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	missense	c.543	p.F181L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	49	0	0	6	14	70	-	-	-	C	166918092	G	C	166918092	3	2	124	1	0	0	0	0	1	0	0	0	13737	1281	45	2	1797	2	RPS6KA2	6	166918092	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	13572638	166918092	4196975	38	7496										
NUPL2	0	genome.wustl.edu	37	chr7	23239963	23239963	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctgctccagcttttggatttGggaagcctgaagtcacatcg	11	10	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	23239963	23239963	G	C	SNP	NUPL2	ENST00000258742	human	ensembl	69_37n	1	known	missense	c.871	p.G291R	0.999	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243	75	0	0	43	23	34.85	-	-	-	C	23239963	G	C	23239963	3	2	124	1	0	0	0	0	1	0	0	0	10848	1348	47	4	897	4	NUPL2	7	23239963	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		23239963	135898700	39	7497										
RUNDC3B	0	genome.wustl.edu	37	chr7	87258230	87258230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgagcgcccgcaatgctgcgGtggagaggaggaacctgatc	16	10	0	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	87258230	87258230	G	T	SNP	RUNDC3B	ENST00000338056	human	ensembl	69_37n	1	known	missense	c.91	p.V31L	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784	15	0	0	15	8	34.78	-	-	-	T	87258230	G	T	87258230	3	4	124	1	0	0	0	0	1	0	0	0	13831	1261	44	4	93	4	RUNDC3B	7	87258230	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	64018267	87258230	71880433	40	7498										
FLNC	0	genome.wustl.edu	37	chr7	128485245	128485245	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cccaaattccccacccgtgtCcatgtgcagcctgcggtcga	9	17	0	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	128485245	128485245	C	T	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	silent	c.3726	p.V1242	0.927	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	104	0	0	68	16	19.05	-	-	-	T	128485245	C	T	128485245	2	4	124	1	0	0	0	0	0	0	0	1	5981	842	30	2		2	FLNC	7	128485245	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	41227015	128485245	30653418	41	7499										
TSGA13	0	genome.wustl.edu	37	chr7	130357607	130357607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctcgcttggatgtgggatcaTccgacagtatcaaagggaag	13	8	2	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	130357607	130357607	T	A	SNP	TSGA13	ENST00000356588	human	ensembl	69_37n	-1	known	missense	c.497	p.D166V	0.000	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265	100	0	0	79	21	21	-	-	-	A	130357607	T	A	130357607	3	1	124	1	0	0	0	0	1	0	0	0	16715	1435	50	5	342	5	TSGA13	7	130357607	Missense_Mutation	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	1872362	130357607	28781056	42	7500										
NUP205	0	genome.wustl.edu	37	chr7	135287613	135287613	+	Frame_Shift_Del	DEL	A	A	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	acttctcaatcttactctgcAaaaggaaaatctttttatgg							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	135287613	135287613	A	-	DEL	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	frame_shift_del	c.2573	p.K859fs	1.000	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	80	0	0	95	26	21.49	-	-	-	-	135287613	A	-	135287613	7	5	124	1	0	1	0	1	0	0	0	0	10832	130	5	0	2643	0	NUP205	7	135287613	Frame_Shift_Del	DEL	A	TCGA-A7-A13D-01A-13D-A272-09	4930006	135287613	23851050	43	7501										
SSPO	0	genome.wustl.edu	37	chr7	149482817	149482817	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tctggagggcactgttgtgcAcatgctcagaggtggctgca	15	9	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	149482817	149482817	A	C	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	66	0	0	45	24	34.78	-	-	-	C	149482817	A	C	149482817	1	2	124	0	1	0	0	0	0	0	0	0	15280	159	6	5		5	SSPO	7	149482817	RNA	SNP	A	TCGA-A7-A13D-01A-13D-A272-09	14195204	149482817	9655846	44	7502										
PAXIP1	0	genome.wustl.edu	37	chr7	154760837	154760837	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gctgaaagagtctgtaagatCtacaaaacaaaagttaggtg	10	5	2	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	154760837	154760837	C	T	SNP	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	splice_site	c.1075-1	e7-1	1.000	-	-	-	no_errors	PAXIP1	HGNC	ENSG00000157212	103	0	0	98	15	13.27	-	-	-	T	154760837	C	T	154760837	5	4	124	1	0	0	0	0	0	0	1	0	11560	927	32	2	2195	2	PAXIP1	7	154760837	Splice_Site	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	5278020	154760837	4377826	45	7503										
RBM33	0	genome.wustl.edu	37	chr7	155473489	155473489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaggacagtatgaaggccacGaagctgagttgacagaagac	13	7	0	5			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	155473489	155473489	G	A	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.454	p.E152K	0.041	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	72	0	0	49	17	25.76	-	-	-	A	155473489	G	A	155473489	3	1	124	1	0	0	0	0	1	0	0	0	13213	1059	37	1	472	1	RBM33	7	155473489	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	712652	155473489	3665174	46	7504										
UBE3C	0	genome.wustl.edu	37	chr7	157046809	157046809	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gtcgtcagcctcgagtggctCcgaatgtttgatcagcaaga	12	10	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	7	157046809	157046809	C	G	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	silent	c.2856	p.L952	0.993	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	67	0	0	72	31	30.1	-	-	-	G	157046809	C	G	157046809	2	3	124	1	0	0	0	0	0	0	0	1	16978	842	30	2		2	UBE3C	7	157046809	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	1573320	157046809	2091854	47	7505										
MAK16	0	genome.wustl.edu	37	chr8	33354179	33354179	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	acttccccattcatgccttcGacaaagccctggaacaacag	6	15	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	8	33354179	33354179	G	C	SNP	MAK16	ENST00000360128	human	ensembl	69_37n	1	known	missense	c.559	p.D187H	1.000	pfam_Mak16,pirsf_Mak16	pfam_Mak16,pirsf_Mak16	-	no_errors	MAK16	HGNC	ENSG00000198042	66	0	0	17	5	22.73	-	-	-	C	33354179	G	C	33354179	3	2	124	1	0	0	0	0	1	0	0	0	9269	1058	37	3	589	3	MAK16	8	33354179	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		33354179	113009843	48	7506										
PRKDC	0	genome.wustl.edu	37	chr8	48730110	48730110	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gtctcttaaggggaacttgaGatgataaattgcctaaaaat	9	5	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	8	48730110	48730110	G	C	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.9455	p.S3152C	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	65	0	0	65	33	33.67	-	-	-	C	48730110	G	C	48730110	3	2	124	1	0	0	0	0	1	0	0	0	12602	942	33	2	3004	2	PRKDC	8	48730110	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	15375931	48730110	97633912	49	7507										
HAS2	0	genome.wustl.edu	37	chr8	122626391	122626391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tattgttgtcccttcttccgCctgccacacttattgatgag	7	12	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	8	122626391	122626391	C	A	SNP	HAS2	ENST00000303924	human	ensembl	69_37n	-1	known	missense	c.1617	p.R539S	1.000	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	37	0	0	30	11	26.83	-	-	-	A	122626391	C	A	122626391	3	1	124	1	0	0	0	0	1	0	0	0	7013	738	26	4	45	4	HAS2	8	122626391	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	73896281	122626391	23737631	50	7508										
NDRG1	0	genome.wustl.edu	37	chr8	134251151	134251151	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	acctccatggacttgggcccGgcgctgttcccagcagcacc	11	17	0	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	8	134251151	134251151	G	C	SNP	NDRG1	ENST00000323851	human	ensembl	69_37n	-1	known	silent	c.1155	p.A385	0.005	NULL	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	46	0	0	47	23	32.86	-	-	-	C	134251151	G	C	134251151	2	2	124	1	0	0	0	0	0	0	0	1	10323	1103	39	3		3	NDRG1	8	134251151	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	11624760	134251151	12112871	51	7509										
PLEC	0	genome.wustl.edu	37	chr8	144995865	144995865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gcggcgtaaacactcagcttCtcattggtggccttcagcaa	10	12	3	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	8	144995865	144995865	C	G	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.8535	p.E2845D	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	31	0	0	26	4	13.33	-	-	-	G	144995865	C	G	144995865	3	3	124	1	0	0	0	0	1	0	0	0	12126	912	32	2	5523	2	PLEC	8	144995865	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	10744714	144995865	1368157	52	7510										
VPS13A	0	genome.wustl.edu	37	chr9	79890418	79890418	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gttctgtgaaatgtagattcAgaggaggaattttttgatgc	12	3	2	4			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	9	79890418	79890418	A	G	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	silent	c.2517	p.S839	0.986	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	58	0	0	16	20	55.56	-	-	-	G	79890418	A	G	79890418	2	3	124	1	0	0	0	0	0	0	0	1	17286	175	7	5		5	VPS13A	9	79890418	Silent	SNP	A	TCGA-A7-A13D-01A-13D-A272-09		79890418	61323013	53	7511										
POLE3	0	genome.wustl.edu	37	chr9	116171999	116172001	+	In_Frame_Del	DEL	GTT	GTT	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cgctttcctttcattgcaaaGttgttagcactgagagaaga							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	9	116171999	116172001	GTT	-	DEL	POLE3	ENST00000374169	human	ensembl	69_37n	-1	known	in_frame_del	c.162_160	p.N54in_frame_del	1.000:1.000:1.000	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	-	no_errors	POLE3	HGNC	ENSG00000148229	63	0	0	26	13	33.33	-	-	-	-	116172001	GTT	-	116171999	7	5	124	1	0	1	0	1	0	0	0	0	12272	1020	36	0	289	0	POLE3	9	116171999	In_Frame_Del	DEL	GTT	TCGA-A7-A13D-01A-13D-A272-09	36281581	116171999	25041432	54	7512										
ZNF79	0	genome.wustl.edu	37	chr9	130207444	130207444	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tccggtgcagctctgccttcGttagacatcagagactccac	9	14	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	9	130207444	130207444	G	C	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	missense	c.1465	p.V489L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	62	0	0	20	18	47.37	-	-	-	C	130207444	G	C	130207444	3	2	124	1	0	0	0	0	1	0	0	0	18254	1145	40	3	1483	3	ZNF79	9	130207444	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	14035445	130207444	11005987	55	7513										
APBB1IP	0	genome.wustl.edu	37	chr10	26781288	26781288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	agtgaagacatagaccaaatGttcagcactttgctgggaga	11	7	1	4			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	10	26781288	26781288	G	A	SNP	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	missense	c.33	p.M11I	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	67	0	0	36	37	50.68	-	-	-	A	26781288	G	A	26781288	3	1	124	1	0	0	0	0	1	0	0	0	761	1377	48	4	35	4	APBB1IP	10	26781288	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		26781288	108753459	56	7514										
FAM21C	0	genome.wustl.edu	37	chr10	46261214	46261214	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aagcaaaagcctccgagctcTccaaaaagaaagcatctgcc	7	13	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	10	46261214	46261214	T	A	SNP	FAM21C	ENST00000374362	human	ensembl	69_37n	1	known	missense	c.1825	p.S609T	0.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661	201	0	0	140	64	31.37	-	-	-	A	46261214	T	A	46261214	3	1	124	1	0	0	0	0	1	0	0	0	5584	1551	54	5	1899	5	FAM21C	10	46261214	Missense_Mutation	SNP	T	TCGA-A7-A13D-01A-13D-A272-09	19479926	46261214	89273533	57	7515										
PPA1	0	genome.wustl.edu	37	chr10	71978538	71978538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	acctccatttttgcattagaCcagcgtggtacttcaactac	6	12	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	10	71978538	71978538	C	A	SNP	PPA1	ENST00000373232	human	ensembl	69_37n	-1	known	missense	c.159	p.W53C	1.000	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA1	HGNC	ENSG00000180817	38	0	0	24	5	17.24	-	-	-	A	71978538	C	A	71978538	3	1	124	1	0	0	0	0	1	0	0	0	12359	508	18	4	746	4	PPA1	10	71978538	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	25717324	71978538	63556209	58	7516										
WNT8B	0	genome.wustl.edu	37	chr10	102242188	102242188	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ggtggacctgctgcagggtgCtggcaacagcgcggccggcc	18	13	0	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	10	102242188	102242188	C	G	SNP	WNT8B	ENST00000343737	human	ensembl	69_37n	1	known	missense	c.671	p.A224G	0.990	pfam_Wnt,smart_Wnt,prints_Wnt8	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8B	HGNC	ENSG00000075290	37	0	0	8	9	52.94	-	-	-	G	102242188	C	G	102242188	3	3	124	1	0	0	0	0	1	0	0	0	17494	797	28	4	693	4	WNT8B	10	102242188	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	30263650	102242188	33292559	59	7517										
RASSF7	0	genome.wustl.edu	37	chr11	561784	561784	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	caggcatgttgttgggactgGcggccatggagctgaaggtg	18	7	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	561784	561784	G	C	SNP	RASSF7	ENST00000344375	human	ensembl	69_37n	1	known	missense	c.16	p.A6P	0.000	smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF7	HGNC	ENSG00000099849	102	0	0	24	24	50	-	-	-	C	561784	G	C	561784	3	2	124	1	0	0	0	0	1	0	0	0	13174	1203	42	4	18	4	RASSF7	11	561784	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		561784	134444732	60	7518										
OR52D1	0	genome.wustl.edu	37	chr11	5510400	5510400	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctttgttgggctattccgtaGtgtggctattgtctccccct	10	11	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	5510400	5510400	G	C	SNP	OR52D1	ENST00000322641	human	ensembl	69_37n	1	known	missense	c.464	p.S155T	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609	60	0	0	18	8	30.77	-	-	-	C	5510400	G	C	5510400	3	2	124	1	0	0	0	0	1	0	0	0	11187	1029	36	4	466	4	OR52D1	11	5510400	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	4948616	5510400	129496116	61	7519										
ILK	0	genome.wustl.edu	37	chr11	6630488	6630490	+	RNA	DEL	GCA	GCA	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	agttagtgggcaaggaagtgGcagcaacatttcaagcctcc							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	6630488	6630490	GCA	-	DEL	ILK	ENST00000526711	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	ILK	HGNC	ENSG00000166333	26	0	0	15	3	16.67	-	-	-	-	6630490	GCA	-	6630488	6	5	124	0	1	1	0	1	0	0	0	0	7767	1218	42	0		0	ILK	11	6630488	RNA	DEL	GCA	TCGA-A7-A13D-01A-13D-A272-09	1120088	6630488	128376028	62	7520										
OVCH2	0	genome.wustl.edu	37	chr11	7723282	7723282	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ccttcagttaagcggccccaGcctgcagttgtacaaataaa	8	12	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	7723282	7723282	G	C	SNP	OVCH2	ENST00000454689	human	ensembl	69_37n	-1	known	silent	c.540	p.G180	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,pfscan_CUB,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378	29	0	0	11	3	21.43	-	-	-	C	7723282	G	C	7723282	2	2	124	1	0	0	0	0	0	0	0	1	11397	958	34	4		4	OVCH2	11	7723282	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	1092794	7723282	127283234	63	7521										
OR5T3	0	genome.wustl.edu	37	chr11	56020650	56020650	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atctatagtttgaggaacaaAgaagtaaaaaaggcagtgaa	10	3	1	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	56020650	56020650	A	G	SNP	OR5T3	ENST00000303059	human	ensembl	69_37n	1	known	silent	c.975	p.K325	0.749	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T3	HGNC	ENSG00000172489	77	0	0	31	20	39.22	-	-	-	G	56020650	A	G	56020650	2	3	124	1	0	0	0	0	0	0	0	1	11256	69	3	5		5	OR5T3	11	56020650	Silent	SNP	A	TCGA-A7-A13D-01A-13D-A272-09	48297368	56020650	78985866	64	7522										
MMP13	0	genome.wustl.edu	37	chr11	102826194	102826194	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tcaggattcccgcgagatttGtaggatggtagtatgatctc	12	7	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	11	102826194	102826194	G	C	SNP	MMP13	ENST00000340273	human	ensembl	69_37n	-1	novel	missense	c.149	p.T50R	0.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP13	HGNC	ENSG00000137745	77	0	0	34	14	29.17	-	-	-	C	102826194	G	C	102826194	3	2	124	1	0	0	0	0	1	0	0	0	9723	1377	48	4	1302	4	MMP13	11	102826194	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	46805544	102826194	32180322	65	7523										
RARG	0	genome.wustl.edu	37	chr12	53609502	53609502	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ttgcacacgaagcatggcttGtagacccgaggaggcggagg	16	9	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	12	53609502	53609502	G	C	SNP	RARG	ENST00000394426	human	ensembl	69_37n	-1	known	nonsense	c.261	p.Y87*	1.000	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC	ENSG00000172819	87	0	0	48	9	15.79	-	-	-	C	53609502	G	C	53609502	4	2	124	1	0	0	0	0	0	1	0	0	13137	1372	48	4	1131	4	RARG	12	53609502	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		53609502	80242393	66	7524										
PCBP2	0	genome.wustl.edu	37	chr12	53853067	53853067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tttctgtaggacataagcagCtctatgaccaatagcacagc	8	10	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	12	53853067	53853067	C	G	SNP	PCBP2	ENST00000546463	human	ensembl	69_37n	1	known	missense	c.255	p.S85R	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP2	HGNC	ENSG00000197111	74	0	0	31	20	39.22	-	-	-	G	53853067	C	G	53853067	3	3	124	1	0	0	0	0	1	0	0	0	11574	796	28	4	273	4	PCBP2	12	53853067	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	243565	53853067	79998828	67	7525										
PTPRB	0	genome.wustl.edu	37	chr12	70974955	70974955	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gagatgctttcatttttaatGaccacattttcatggatcag	7	7	3	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	12	70974955	70974955	G	C	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.2439	p.V813	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	104	0	0	27	34	55.74	-	-	-	C	70974955	G	C	70974955	2	2	124	1	0	0	0	0	0	0	0	1	12879	1277	45	2		2	PTPRB	12	70974955	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	17121888	70974955	62876940	68	7526										
ACACB	0	genome.wustl.edu	37	chr12	109654723	109654723	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	accagctggtgatcatgttgAtcgtaagcaggaagagggcc	14	8	1	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	12	109654723	109654723	A	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.3562	p.I1188F	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	96	0	0	33	18	35.29	-	-	-	T	109654723	A	T	109654723	3	4	124	1	0	0	0	0	1	0	0	0	107	333	12	5	3652	5	ACACB	12	109654723	Missense_Mutation	SNP	A	TCGA-A7-A13D-01A-13D-A272-09	38679768	109654723	24197172	69	7527										
TMEM120B	0	genome.wustl.edu	37	chr12	122213016	122213016	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgtttgagctctccagccacGaggaatgcagagaatggcag	13	9	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	12	122213016	122213016	G	T	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	nonsense	c.886	p.E296*	0.990	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	69	0	0	23	23	50	-	-	-	T	122213016	G	T	122213016	4	4	124	1	0	0	0	0	0	1	0	0	16129	1059	37	3	928	3	TMEM120B	12	122213016	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	12558293	122213016	11638879	70	7528										
USPL1	0	genome.wustl.edu	37	chr13	31205414	31205414	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atgtacatcatttccccaggCtttatgtgtccagtggaaaa	8	9	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	13	31205414	31205414	C	A	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.671	p.A224D	0.018	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	100	0	0	37	25	40.32	-	-	-	A	31205414	C	A	31205414	3	1	124	1	0	0	0	0	1	0	0	0	17189	797	28	4	681	4	USPL1	13	31205414	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09		31205414	83964464	71	7529										
RASA3	0	genome.wustl.edu	37	chr13	114773080	114773080	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gaggacgaaatcagatccaaGaactaaagttggaagaaatc	10	6	1	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	13	114773080	114773080	G	C	SNP	RASA3	ENST00000334062	human	ensembl	69_37n	-1	known	missense	c.1671	p.F557L	0.997	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,prints_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASA3	HGNC	ENSG00000185989	86	0	0	22	26	54.17	-	-	-	C	114773080	G	C	114773080	3	2	124	1	0	0	0	0	1	0	0	0	13145	933	33	2	861	2	RASA3	13	114773080	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	83567666	114773080	396798	72	7530										
TJP1	0	genome.wustl.edu	37	chr15	30025016	30025016	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tgtacactggctagctgctcAgctctacacaagaaaggaga	10	10	2	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	15	30025016	30025016	A	C	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	silent	c.1740	p.A580	1.000	pfam_SH3_2,superfamily_SH3_domain,pfscan_SH3_domain	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	35	0	0	5	9	64.29	-	-	-	C	30025016	A	C	30025016	2	2	124	1	0	0	0	0	0	0	0	1	16024	175	7	5		5	TJP1	15	30025016	Silent	SNP	A	TCGA-A7-A13D-01A-13D-A272-09		30025016	72506376	73	7531										
PTPLAD1	0	genome.wustl.edu	37	chr15	65851018	65851020	+	In_Frame_Del	DEL	GAA	GAA	-													0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aacttttgtctaaattctagGaagaagagcgcctaaataaa							TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	15	65851018	65851020	GAA	-	DEL	PTPLAD1	ENST00000261875	human	ensembl	69_37n	1	known	in_frame_del	c.370_372	p.E126in_frame_del	1.000:1.000:1.000	NULL	pfam_Tyr_Pase-like_PTPLA,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTPLAD1	HGNC	ENSG00000074696	75	0	0	82	13	13.54	-	-	-	-	65851020	GAA	-	65851018	7	5	124	1	0	1	0	1	0	0	0	0	12856	1188	41	0	388	0	PTPLAD1	15	65851018	In_Frame_Del	DEL	GAA	TCGA-A7-A13D-01A-13D-A272-09	35826002	65851018	36680374	74	7532										
MYO9A	0	genome.wustl.edu	37	chr15	72311424	72311424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atcccagctctgtctgagggGtttctttgttatctgaaagt	10	8	4	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	15	72311424	72311424	G	T	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.1111	p.P371T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	41	0	0	24	4	14.29	-	-	-	T	72311424	G	T	72311424	3	4	124	1	0	0	0	0	1	0	0	0	10156	1261	44	4	6683	4	MYO9A	15	72311424	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	6460406	72311424	30219968	75	7533										
STRA6	0	genome.wustl.edu	37	chr15	74472355	74472355	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctgggaggagagccggggagGgaggaggatggtaggcagga	24	4	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	15	74472355	74472355	G	C	SNP	STRA6	ENST00000574439	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868	86	0	0	44	11	20	-	-	-	C	74472355	G	C	74472355	1	2	124	0	1	0	0	0	0	0	0	0	15413	1247	43	4		4	STRA6	15	74472355	RNA	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	2160931	74472355	28059037	76	7534										
TEKT5	0	genome.wustl.edu	37	chr16	10769864	10769864	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ttcacatccgtcacctcagaGatgcgggcgttgaaggccag	12	12	3	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	16	10769864	10769864	G	T	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	silent	c.1038	p.I346	0.999	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	66	0	0	43	6	12.24	-	-	-	T	10769864	G	T	10769864	2	4	124	1	0	0	0	0	0	0	0	1	15851	932	33	2		2	TEKT5	16	10769864	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		10769864	79584889	77	7535										
C16orf93	0	genome.wustl.edu	37	chr16	30772925	30772925	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cgccgccgccgtcgtccactGagtccgcacactcgcacgcg	11	20	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	16	30772925	30772925	G	A	SNP	C16orf93	ENST00000543610	human	ensembl	69_37n	-1	known	nonsense	c.145	p.Q49*	0.022	NULL	NULL	-	no_errors	C16orf93	HGNC	ENSG00000196118	141	0	0	33	54	62.07	-	-	-	A	30772925	G	A	30772925	4	1	124	1	0	0	0	0	0	1	0	0	1859	1305	45	2		2	C16orf93	16	30772925	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	20003061	30772925	59581828	78	7536										
C16orf87	0	genome.wustl.edu	37	chr16	46858381	46858381	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaccacaaggacatgatttaCatgcaacaggaacctgtagg	9	9	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	16	46858381	46858381	C	A	SNP	C16orf87	ENST00000285697	human	ensembl	69_37n	-1	known	missense	c.80	p.C27F	1.000	pfam_UPF0547	pfam_UPF0547	-	no_errors	C16orf87	HGNC	ENSG00000155330	51	0	0	16	9	36	-	-	-	A	46858381	C	A	46858381	3	1	124	1	0	0	0	0	1	0	0	0	1853	478	17	4	396	4	C16orf87	16	46858381	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	16085456	46858381	43496372	79	7537										
SIAH1	0	genome.wustl.edu	37	chr16	48396330	48396330	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aggtaatgctgtagcagtctGacggctcatttctgaaataa	10	7	3	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	16	48396330	48396330	G	A	SNP	SIAH1	ENST00000356721	human	ensembl	69_37n	-1	known	nonsense	c.103	p.Q35*	1.000	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH1	HGNC	ENSG00000196470	49	0	0	20	9	31.03	-	-	-	A	48396330	G	A	48396330	4	1	124	1	0	0	0	0	0	1	0	0	14388	1299	45	2	842	2	SIAH1	16	48396330	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	1537949	48396330	41958423	80	7538										
TP53	0	genome.wustl.edu	37	chr17	7578188	7578188	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aaaccagacctcaggcggctCatagggcaccaccacactat	8	15	2	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	17	7578188	7578188	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.661	p.E221*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	80	0	0	34	48	58.54	-	-	-	A	7578188	C	A	7578188	4	1	124	1	0	0	0	0	0	1	0	0	16477	835	29	2	633	2	TP53	17	7578188	Nonsense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09		7578188	73617022	81	7539										
TMEM220	0	genome.wustl.edu	37	chr17	10632347	10632347	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctggaagcggctcatactcaCcacccacacctctgcatctg	7	17	4	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	17	10632347	10632347	C	A	SNP	TMEM220	ENST00000341871	human	ensembl	69_37n	-1	known	splice_site	c.102+1	e2+1	1.000	-	-	-	no_errors	TMEM220	HGNC	ENSG00000187824	57	0	0	36	14	28	-	-	-	A	10632347	C	A	10632347	5	1	124	1	0	0	0	0	0	0	1	0	16239	521	18	4	399	4	TMEM220	17	10632347	Splice_Site	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	3054159	10632347	70562863	82	7540										
NOS2	0	genome.wustl.edu	37	chr17	26101297	26101297	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cctaacctgatagtagtagaAaggggacaggacgtagttca	12	7	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	17	26101297	26101297	A	C	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.1462	p.F488V	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	40	0	0	19	14	42.42	-	-	-	C	26101297	A	C	26101297	3	2	124	1	0	0	0	0	1	0	0	0	10615	14	1	5	2063	5	NOS2	17	26101297	Missense_Mutation	SNP	A	TCGA-A7-A13D-01A-13D-A272-09	15468950	26101297	55093913	83	7541										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40629720	40629720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aagagtcctcatccctcttgGagccaagtgagatgggaaga	12	9	2	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	17	40629720	40629720	G	A	SNP	ATP6V0A1	ENST00000264649	human	ensembl	69_37n	1	known	missense	c.487	p.E163K	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	40	0	0	83	12	12.63	-	-	-	A	40629720	G	A	40629720	3	1	124	1	0	0	0	0	1	0	0	0	1172	1175	41	2	505	2	ATP6V0A1	17	40629720	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	14528423	40629720	40565490	84	7542										
SGSH	0	genome.wustl.edu	37	chr17	78188424	78188424	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cgactcataccggtcatcctGagtctgcaggaatttccgga	10	12	3	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	17	78188424	78188424	G	C	SNP	SGSH	ENST00000572257	human	ensembl	69_37n	-1	putative	nonsense	c.98	p.S33*	0.962	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SGSH	HGNC	ENSG00000181523	82	0	0	62	31	33.33	-	-	-	C	78188424	G	C	78188424	4	2	124	1	0	0	0	0	0	1	0	0	14309	1299	45	2	1032	2	SGSH	17	78188424	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	37558704	78188424	3006786	85	7543										
RANBP3	0	genome.wustl.edu	37	chr19	5917815	5917815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cccgactcaccagctgcggtGgcccctgaaggagccaggac	13	16	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	19	5917815	5917815	G	A	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	silent	c.1650	p.A550	0.004	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	124	0	0	41	29	41.43	-	-	-	A	5917815	G	A	5917815	2	1	124	1	0	0	0	0	0	0	0	1	13112	1335	47	4		4	RANBP3	19	5917815	Silent	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		5917815	53211168	86	7544										
DENND1C	0	genome.wustl.edu	37	chr19	6476917	6476917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ctcttctctcggccaggagcGccgcgaacagccccacgatg	11	17	2	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	19	6476917	6476917	G	A	SNP	DENND1C	ENST00000381480	human	ensembl	69_37n	-1	known	missense	c.629	p.A210V	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744	42	0	0	27	6	18.18	-	-	-	A	6476917	G	A	6476917	3	1	124	1	0	0	0	0	1	0	0	0	4464	1087	38	1	1832	1	DENND1C	19	6476917	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	559102	6476917	52652066	87	7545										
EMR2	0	genome.wustl.edu	37	chr19	14876520	14876520	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ggattccgtgtctgggcttcCagcctgggcggcagcggcag	17	12	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	19	14876520	14876520	C	T	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	nonsense	c.731	p.W244*	0.046	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	54	0	0	29	14	32.56	-	-	-	T	14876520	C	T	14876520	4	4	124	1	0	0	0	0	0	1	0	0	5142	595	21	4	1796	4	EMR2	19	14876520	Nonsense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	8399603	14876520	44252463	88	7546										
KCNN4	0	genome.wustl.edu	37	chr19	44278610	44278610	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	cccaggaatcccggccagggCtgcggggaggtcagcggcgc	18	14	1	0			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	19	44278610	44278610	C	T	SNP	KCNN4	ENST00000262888	human	ensembl	69_37n	-1	known	silent	c.417	p.Q139	0.264	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom	-	no_errors	KCNN4	HGNC	ENSG00000104783	48	0	0	46	22	32.35	-	-	-	T	44278610	C	T	44278610	2	4	124	1	0	0	0	0	0	0	0	1	8135	796	28	4		4	KCNN4	19	44278610	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	29402090	44278610	14850373	89	7547										
EPN1	0	genome.wustl.edu	37	chr19	56200357	56200357	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	atgagcaaggaggaggccgaCcaggtactgggcgtgcagct	17	9	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	19	56200357	56200357	C	T	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	silent	c.933	p.D311	1.000	smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	56	0	0	33	19	36.54	-	-	-	T	56200357	C	T	56200357	2	4	124	1	0	0	0	0	0	0	0	1	5222	506	18	4		4	EPN1	19	56200357	Silent	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	11921747	56200357	2928626	90	7548										
KIF3B	0	genome.wustl.edu	37	chr20	30904100	30904100	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gcagaaaatcctggagcagaAacgacaggaaattgcagagc	12	8	0	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	20	30904100	30904100	A	T	SNP	KIF3B	ENST00000375712	human	ensembl	69_37n	1	known	missense	c.1484	p.K495I	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	46	0	0	44	21	32.31	-	-	-	T	30904100	A	T	30904100	3	4	124	1	0	0	0	0	1	0	0	0	8353	14	1	5	1490	5	KIF3B	20	30904100	Missense_Mutation	SNP	A	TCGA-A7-A13D-01A-13D-A272-09		30904100	32121420	91	7549										
CDH26	0	genome.wustl.edu	37	chr20	58547126	58547126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	tctagaagatcatgagaacgGaaggatatatgttcaccgcc	10	8	3	3			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	20	58547126	58547126	G	A	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.341	p.G114E	0.783	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	84	0	0	81	17	17.35	-	-	-	A	58547126	G	A	58547126	3	1	124	1	0	0	0	0	1	0	0	0	3139	1174	41	2	355	2	CDH26	20	58547126	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	27643026	58547126	4478394	92	7550										
ARFGAP1	0	genome.wustl.edu	37	chr20	61907987	61907987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gtacaacagcagagccgcggCcctctttagggataaggtag	13	10	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	20	61907987	61907987	C	A	SNP	ARFGAP1	ENST00000353546	human	ensembl	69_37n	1	known	missense	c.326	p.A109D	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199	53	0	0	32	19	37.25	-	-	-	A	61907987	C	A	61907987	3	1	124	1	0	0	0	0	1	0	0	0	851	739	26	4	336	4	ARFGAP1	20	61907987	Missense_Mutation	SNP	C	TCGA-A7-A13D-01A-13D-A272-09	3360861	61907987	1117533	93	7551										
UMODL1	0	genome.wustl.edu	37	chr21	43542941	43542941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	ttcctccttgtgccttgcagGtgactctcctggcaatgaaa	9	12	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	21	43542941	43542941	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.3212	p.G1071V	0.979	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	59	0	0	48	16	25	-	-	-	T	43542941	G	T	43542941	3	4	124	1	0	0	0	0	1	0	0	0	17077	1275	44	4	3274	4	UMODL1	21	43542941	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		43542941	4586954	94	7552										
TRMT2A	0	genome.wustl.edu	37	chr22	20100266	20100266	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	aggtccactgccacagccttGaccggccggaagggaatgcc	13	14	0	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	22	20100266	20100266	G	C	SNP	TRMT2A	ENST00000444256	human	ensembl	69_37n	-1	novel	nonsense	c.251	p.S84*	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	TRMT2A	HGNC	ENSG00000099899	49	0	0	33	16	32.65	-	-	-	C	20100266	G	C	20100266	4	2	124	1	0	0	0	0	0	1	0	0	16661	1277	45	2	183	2	TRMT2A	22	20100266	Nonsense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		20100266	31204300	95	7553										
SHROOM2	0	genome.wustl.edu	37	chrX	9864381	9864381	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	agcaaacctgttccccagagGcctgcccagaagcaagctct	9	15	1	2			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	X	9864381	9864381	G	C	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2433	p.R811S	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	63	0	0	44	14	24.14	-	-	-	C	9864381	G	C	9864381	3	2	124	1	0	0	0	0	1	0	0	0	14383	1194	42	4	2447	4	SHROOM2	23	9864381	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09		9864381	145406179	96	7554										
PCDH19	0	genome.wustl.edu	37	chrX	99551448	99551448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123711340206186	12	0.356030377341679	1.43408320493066	1.81958944281525	1.00727272727273	0.251859828599632	0.88603925313108	0	gacatactgctccagatcacGggctgggggagccagggcaa	15	11	1	1			TCGA-A7-A13D-01A-13D-A272-09	TCGA-A7-A13D-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3e0f9b90-88f4-41f1-91b2-2f4bcdfaaebb	2fc0129f-0a1c-4f01-85a1-d447fc9d348b	X	99551448	99551448	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.3274	p.R1092S	0.979	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	76	0	0	16	19	54.29	-	-	-	T	99551448	G	T	99551448	3	4	124	1	0	0	0	0	1	0	0	0	11587	1116	39	3	176	3	PCDH19	23	99551448	Missense_Mutation	SNP	G	TCGA-A7-A13D-01A-13D-A272-09	89687067	99551448	55719112	97	7555										
PTPRU	0	genome.wustl.edu	37	chr1	29609420	29609420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	caccacttgagcctaggaagGcctatctcatctacttccag	7	14	2	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	29609420	29609420	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.2101	p.A701T	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	58	0	0	45	16	25.81	-	-	-	A	29609420	G	A	29609420	3	1	125	1	0	0	0	0	1	0	0	0	12896	1203	42	4	2147	4	PTPRU	1	29609420	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		29609420	219641201	1	7556										
CSMD2	0	genome.wustl.edu	37	chr1	34181939	34181939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tggagaaatcagagatgaagCggacctgggcagtgaagttg	16	5	1	4			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	34181939	34181939	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.3164	p.R1055H	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	46	0	0	16	25	60.98	-	-	-	T	34181939	C	T	34181939	3	4	125	1	0	0	0	0	1	0	0	0	3977	768	27	1	7619	1	CSMD2	1	34181939	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	4572519	34181939	215068682	2	7557										
LRRC42	0	genome.wustl.edu	37	chr1	54417888	54417888	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aaagagaagactgatcatttCatcttcacatacacccgaga	6	10	4	4			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	54417888	54417888	C	A	SNP	LRRC42	ENST00000319223	human	ensembl	69_37n	1	known	missense	c.216	p.F72L	1.000	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212	73	0	0	55	14	20.29	-	-	-	A	54417888	C	A	54417888	3	1	125	1	0	0	0	0	1	0	0	0	9066	825	29	2	218	2	LRRC42	1	54417888	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	20235949	54417888	194832733	3	7558										
RBMXL1	0	genome.wustl.edu	37	chr1	89448782	89448782	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tggaatgaccataatcacggTaagtataatctcgtggtggt	11	6	2	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	89448782	89448782	T	G	SNP	RBMXL1	ENST00000321792	human	ensembl	69_37n	-1	known	missense	c.728	p.Y243S	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	142	1	0.7	68	36	34.29	-	-	-	G	89448782	T	G	89448782	3	3	125	1	0	0	0	0	1	0	0	0	13236	1638	57	5	448	5	RBMXL1	1	89448782	Missense_Mutation	SNP	T	TCGA-A7-A13E-01A-11D-A272-09	35030894	89448782	159801839	4	7559										
MAGI3	0	genome.wustl.edu	37	chr1	114225905	114225905	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cagaggaacatttggataagAttcctagtcctctaaaaaat	7	7	1	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	114225905	114225905	A	C	SNP	MAGI3	ENST00000307546	human	ensembl	69_37n	1	novel	missense	c.3715	p.I1239L	0.002	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	18	0	0	11	11	50	-	-	-	C	114225905	A	C	114225905	3	2	125	1	0	0	0	0	1	0	0	0	9263	333	12	5	3851	5	MAGI3	1	114225905	Missense_Mutation	SNP	A	TCGA-A7-A13E-01A-11D-A272-09	24777123	114225905	135024716	5	7560										
TNN	0	genome.wustl.edu	37	chr1	175067673	175067673	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	ggtatggagtacatggtgcaCgtgtgggcccagaaggggga	19	6	0	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	175067673	175067673	C	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.2061	p.H687Q	0.088	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	107	0	0	59	62	51.24	-	-	-	A	175067673	C	A	175067673	3	1	125	1	0	0	0	0	1	0	0	0	16418	535	19	3	2091	3	TNN	1	175067673	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	60841768	175067673	74182948	6	7561										
PAPPA2	0	genome.wustl.edu	37	chr1	176709226	176709226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgctgaatttctcatccccaCgggtcggcatctcagctgtg	10	13	2	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	176709226	176709226	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4045	p.R1349W	0.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	58	0	0	64	35	35.35	-	-	-	T	176709226	C	T	176709226	3	4	125	1	0	0	0	0	1	0	0	0	11506	527	19	1	4148	1	PAPPA2	1	176709226	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	1641553	176709226	72541395	7	7562										
PLXNA2	0	genome.wustl.edu	37	chr1	208207852	208207852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tctcaccgtatctgctgatgGacgtccgggagatgctggca	13	11	2	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	208207852	208207852	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.4850	p.S1617F	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	70	0	0	92	18	16.36	-	-	-	A	208207852	G	A	208207852	3	1	125	1	0	0	0	0	1	0	0	0	12194	1174	41	2	858	2	PLXNA2	1	208207852	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	31498626	208207852	41042769	8	7563										
ARID4B	0	genome.wustl.edu	37	chr1	235418998	235419001	+	Frame_Shift_Del	DEL	GTTA	GTTA	-													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cagtgtaccaactcgcatctGttagtttattgataacagct							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	GTTA	GTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	1	235418998	235419001	GTTA	-	DEL	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	frame_shift_del	c.251_248	p.L83fs	1.000:1.000:1.000:1.000	smart_Tudor	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	59	0	0	90	10	10	-	-	-	-	235419001	GTTA	-	235418998	7	5	125	1	0	1	0	1	0	0	0	0	922	1377	48	0	3767	0	ARID4B	1	235418998	Frame_Shift_Del	DEL	GTTA	TCGA-A7-A13E-01A-11D-A272-09	27211146	235418998	13831623	9	7564										
ASXL2	0	genome.wustl.edu	37	chr2	25967215	25967215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tctgtgctttgaccagttggGcttttgctttgatgtctgca	11	8	2	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	25967215	25967215	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1991	p.A664V	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	30	0	0	42	14	25	-	-	-	A	25967215	G	A	25967215	3	1	125	1	0	0	0	0	1	0	0	0	1071	1203	42	4	2320	4	ASXL2	2	25967215	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		25967215	217232158	10	7565										
OTOF	0	genome.wustl.edu	37	chr2	26687737	26687737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgcatccagtgccccattacCgttctcgtcctcaatctcag	6	16	3	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	26687737	26687737	C	T	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.4960	p.G1654S	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	130	0	0	172	32	15.69	-	-	-	T	26687737	C	T	26687737	3	4	125	1	0	0	0	0	1	0	0	0	11376	666	23	1	1250	1	OTOF	2	26687737	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	720522	26687737	216511636	11	7566										
RGPD2	0	genome.wustl.edu	37	chr2	88071774	88071774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gaagaaggctctctctctcaCtacctggcttcaagaaaatg	8	11	4	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	88071774	88071774	C	T	SNP	RGPD2	ENST00000398146	human	ensembl	69_37n	-1	known	missense	c.5150	p.S1717N	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304	29	0	0	13	16	55.17	-	-	-	T	88071774	C	T	88071774	3	4	125	1	0	0	0	0	1	0	0	0	13369	565	20	4	5491	4	RGPD2	2	88071774	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	61384037	88071774	155127599	12	7567										
COX5B	0	genome.wustl.edu	37	chr2	98262609	98262609	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gcgcaggccctgagggctcgCggccccagtggcgcggccgc	18	17	0	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	98262609	98262609	C	A	SNP	COX5B	ENST00000258424	human	ensembl	69_37n	1	known	silent	c.60	p.R20	0.896	NULL	pfam_Cyt_c_oxidase_su5b	-	no_errors	COX5B	HGNC	ENSG00000135940	111	0	0	12	66	84.62	-	-	-	A	98262609	C	A	98262609	2	1	125	1	0	0	0	0	0	0	0	1	3803	755	27	3		3	COX5B	2	98262609	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	10190835	98262609	144936764	13	7568										
KCNH7	0	genome.wustl.edu	37	chr2	163374255	163374255	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cataccttcgctggcatgtcGgtctctaaatatgttcttgg	9	10	2	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	163374255	163374255	G	T	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	silent	c.877	p.R293	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	37	0	0	13	9	40.91	-	-	-	T	163374255	G	T	163374255	2	4	125	1	0	0	0	0	0	0	0	1	8091	1124	39	3		3	KCNH7	2	163374255	Silent	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	65111646	163374255	79825118	14	7569										
GPR1	0	genome.wustl.edu	37	chr2	207041683	207041683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	ccagtggaaattcatggccaCataggagatgtacaggggca	13	8	1	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	207041683	207041683	C	T	SNP	GPR1	ENST00000407325	human	ensembl	69_37n	-1	known	missense	c.289	p.V97M	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_ATII_rcpt	-	no_errors	GPR1	HGNC	ENSG00000183671	29	0	0	15	9	37.5	-	-	-	T	207041683	C	T	207041683	3	4	125	1	0	0	0	0	1	0	0	0	6671	478	17	4	782	4	GPR1	2	207041683	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	43667428	207041683	36157690	15	7570										
ABCA12	0	genome.wustl.edu	37	chr2	215839540	215839540	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cacatgttgtcaattccaggGaagtcccacattgctgagac	9	11	1	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	2	215839540	215839540	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	silent	c.5430	p.F1810	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	42	0	0	18	9	33.33	-	-	-	A	215839540	G	A	215839540	2	1	125	1	0	0	0	0	0	0	0	1	30	1165	41	2		2	ABCA12	2	215839540	Silent	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	8797857	215839540	27359833	16	7571										
FANCD2	0	genome.wustl.edu	37	chr3	10119819	10119819	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgcttttcttgctggaagatCtctcccagaagctggagagt	11	9	2	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	3	10119819	10119819	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.2914	p.L972F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	60	0	0	19	24	55.81	-	-	-	T	10119819	C	T	10119819	3	4	125	1	0	0	0	0	1	0	0	0	5711	913	32	2	3028	2	FANCD2	3	10119819	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		10119819	187902611	17	7572										
CDHR4	0	genome.wustl.edu	37	chr3	49829169	49829169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gactcatgacactgctgggtGcctgggacatctccatcttc	10	13	3	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	3	49829169	49829169	G	A	SNP	CDHR4	ENST00000412678	human	ensembl	69_37n	-1	known	missense	c.2261	p.A754V	0.006	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492	91	0	0	52	14	21.21	-	-	-	A	49829169	G	A	49829169	3	1	125	1	0	0	0	0	1	0	0	0	3150	1319	46	4	117	4	CDHR4	3	49829169	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	39709350	49829169	148193261	18	7573										
MECOM	0	genome.wustl.edu	37	chr3	168849290	168849290	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	agcagaagctcctctcccggCgcaatgtctgcaactactct	8	15	3	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	3	168849290	168849290	C	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	0.075	smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	58	0	0	29	12	29.27	-	-	-	T	168849290	C	T	168849290	2	4	125	1	0	0	0	0	0	0	0	1	9493	755	27	1		1	MECOM	3	168849290	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	119020121	168849290	29173140	19	7574										
EIF4G1	0	genome.wustl.edu	37	chr3	184035124	184035124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gacagcacttctaccctagcCgggcccagcccccgagcagt	10	18	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	3	184035124	184035124	C	T	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.184	p.R62W	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	41	0	0	38	18	32.14	-	-	-	T	184035124	C	T	184035124	3	4	125	1	0	0	0	0	1	0	0	0	5073	643	23	1	173	1	EIF4G1	3	184035124	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	15185834	184035124	13987306	20	7575										
KIAA1211	0	genome.wustl.edu	37	chr4	57181827	57181827	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gccagtcaatgcaaagttctCtattatgcctgcctggcaga	9	11	2	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	57181827	57181827	C	G	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	missense	c.2159	p.S720C	1.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	49	0	0	36	13	26.53	-	-	-	G	57181827	C	G	57181827	3	3	125	1	0	0	0	0	1	0	0	0	8267	913	32	2	2177	2	KIAA1211	4	57181827	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		57181827	133972449	21	7576			1	11		2	2	38	C		7.529579e-05
KIAA1211	0	genome.wustl.edu	37	chr4	57181864	57181864	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cagaaattttccgatggtggCacggagacctccaaacagag	11	10	0	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	57181864	57181864	C	A	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	silent	c.2196	p.G732	0.041	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	39	0	0	28	16	36.36	-	-	-	A	57181864	C	A	57181864	2	1	125	1	0	0	0	0	0	0	0	1	8267	697	25	4		4	KIAA1211	4	57181864	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	37	57181864	133972412	22	7577			1	11		2	2	38	C		7.529579e-05
USO1	0	genome.wustl.edu	37	chr4	76725346	76725346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	ttaaaatgtcaaaatgaacaGctccagacggcagtcacaca	7	10	2	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	76725346	76725346	G	T	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.2073	p.Q691H	1.000	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	37	0	0	32	4	11.11	-	-	-	T	76725346	G	T	76725346	3	4	125	1	0	0	0	0	1	0	0	0	17136	962	34	4	1957	4	USO1	4	76725346	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	19543482	76725346	114428930	23	7578										
ADH1C	0	genome.wustl.edu	37	chr4	100273815	100273815	+	Frame_Shift_Del	DEL	T	T	-													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gtaatatattttttgcttacTtttcctgctgtgctcatatt							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	100273815	100273815	T	-	DEL	ADH1C	ENST00000515683	human	ensembl	69_37n	-1	known	frame_shift_del	c.18	p.V7fs	1.000	NULL	NULL	-	pseudogene	ADH1C	HGNC	ENSG00000248144	73	0	0	71	13	15.48	-	-	-	-	100273815	T	-	100273815	7	5	125	1	0	1	0	1	0	0	0	0	309	1623	56	0	1145	0	ADH1C	4	100273815	Frame_Shift_Del	DEL	T	TCGA-A7-A13E-01A-11D-A272-09	23548469	100273815	90880461	24	7579										
RAPGEF2	0	genome.wustl.edu	37	chr4	160162389	160162389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aaaatgaagaatattttcagCggcaagcttcccatagacag	8	8	1	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	160162389	160162389	C	T	SNP	RAPGEF2	ENST00000505478	human	ensembl	69_37n	1	putative	missense	c.379	p.R127W	1.000	superfamily_cNMP-bd-like	superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	RAPGEF2	HGNC	ENSG00000109756	73	0	0	23	23	50	-	-	-	T	160162389	C	T	160162389	3	4	125	1	0	0	0	0	1	0	0	0	13127	783	27	1		1	RAPGEF2	4	160162389	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	59888574	160162389	30991887	25	7580										
PALLD	0	genome.wustl.edu	37	chr4	169589473	169589473	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cgctacacctgtttggctacGaatcccagcggctcagacac	9	15	1	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	4	169589473	169589473	G	A	SNP	PALLD	ENST00000261509	human	ensembl	69_37n	1	known	silent	c.1041	p.T347	0.289	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	71	0	0	38	17	30.91	-	-	-	A	169589473	G	A	169589473	2	1	125	1	0	0	0	0	0	0	0	1	11480	1045	37	1		1	PALLD	4	169589473	Silent	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	9427084	169589473	21564803	26	7581										
PLEKHG4B	0	genome.wustl.edu	37	chr5	171449	171449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tcaaggaggccagctgtggcCtggcccaggggcaggagctg	18	11	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	5	171449	171449	C	G	SNP	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	missense	c.2872	p.L958V	0.001	superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	32	0	0	40	13	24.53	-	-	-	G	171449	C	G	171449	3	3	125	1	0	0	0	0	1	0	0	0	12146	680	24	4	2926	4	PLEKHG4B	5	171449	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		171449	180743811	27	7582										
CDH9	0	genome.wustl.edu	37	chr5	26881404	26881404	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tcattcccttcataggcataCgttgccagcgaatcatatgg	8	11	3	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	5	26881404	26881404	C	T	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	silent	c.2211	p.T737	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	47	0	0	25	16	39.02	-	-	-	T	26881404	C	T	26881404	2	4	125	1	0	0	0	0	0	0	0	1	3146	523	19	1		1	CDH9	5	26881404	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	26709955	26881404	154033856	28	7583										
PITX1	0	genome.wustl.edu	37	chr5	134367104	134367106	+	In_Frame_Del	DEL	CTT	CTT	-													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgcgtacgttgccgccgctgCttcttcttcttggctgggtc							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	5	134367104	134367106	CTT	-	DEL	PITX1	ENST00000265340	human	ensembl	69_37n	-1	known	in_frame_del	c.264_262	p.K88in_frame_del	1.000:1.000:1.000	superfamily_Homeodomain-like,pirsf_Homeobox_Pitx/unc30,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX1	HGNC	ENSG00000069011	164	0	0	71	27	27.27	-	-	-	-	134367106	CTT	-	134367104	7	5	125	1	0	1	0	1	0	0	0	0	12028	796	28	0	688	0	PITX1	5	134367104	In_Frame_Del	DEL	CTT	TCGA-A7-A13E-01A-11D-A272-09	107485700	134367104	46548156	29	7584										
CCNJL	0	genome.wustl.edu	37	chr5	159679911	159679911	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aactcaggcccctctgcataGagccagggaaagaaaagcac	10	12	2	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	5	159679911	159679911	G	C	SNP	CCNJL	ENST00000377503	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CCNJL	HGNC	ENSG00000135083	38	0	0	9	22	70.97	-	-	-	C	159679911	G	C	159679911	1	2	125	0	1	0	0	0	0	0	0	0	2958	957	33	2		2	CCNJL	5	159679911	RNA	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	25312807	159679911	21235349	30	7585										
RNF182	0	genome.wustl.edu	37	chr6	13977596	13977596	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gatgaagttagtagcctgccCgatgacaacaacatccttgt	9	10	0	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	6	13977596	13977596	C	G	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	silent	c.246	p.P82	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	34	0	0	33	10	23.26	-	-	-	G	13977596	C	G	13977596	2	3	125	1	0	0	0	0	0	0	0	1	13552	639	23	3		3	RNF182	6	13977596	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		13977596	157137471	31	7586										
DAAM2	0	genome.wustl.edu	37	chr6	39836695	39836695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tcatcaatgctgtcctcaatGctggagctggagaggtgggg	15	8	3	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	6	39836695	39836695	G	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	missense	c.859	p.A287T	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	38	0	0	25	10	28.57	-	-	-	A	39836695	G	A	39836695	3	1	125	1	0	0	0	0	1	0	0	0	4248	1319	46	4	881	4	DAAM2	6	39836695	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	25859099	39836695	131278372	32	7587										
XPO5	0	genome.wustl.edu	37	chr6	43516145	43516145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tctccatttgtgtcaggagtAgctcattggagaggagttgc	13	7	3	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	6	43516145	43516145	A	G	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.1913	p.L638P	0.924	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	105	0	0	51	53	50.96	-	-	-	G	43516145	A	G	43516145	3	3	125	1	0	0	0	0	1	0	0	0	17544	420	15	5	1761	5	XPO5	6	43516145	Missense_Mutation	SNP	A	TCGA-A7-A13E-01A-11D-A272-09	3679450	43516145	127598922	33	7588										
CDK19	0	genome.wustl.edu	37	chr6	111136364	111136364	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgcttcccccatagaggcacGggacgcgggggccgccgccg	16	16	0	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	6	111136364	111136364	G	C	SNP	CDK19	ENST00000460913	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CDK19	HGNC	ENSG00000155111	81	0	0	48	15	23.81	-	-	-	C	111136364	G	C	111136364	1	2	125	0	1	0	0	0	0	0	0	0	3164	1131	39	3		3	CDK19	6	111136364	RNA	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	67620219	111136364	59978703	34	7589										
HECA	0	genome.wustl.edu	37	chr6	139487770	139487770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aaaaagaagaagtctggctcCgagaagaacacagggaggcc	13	8	1	4			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	6	139487770	139487770	C	T	SNP	HECA	ENST00000367658	human	ensembl	69_37n	1	known	silent	c.621	p.S207	0.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406	36	0	0	33	15	31.25	-	-	-	T	139487770	C	T	139487770	2	4	125	1	0	0	0	0	0	0	0	1	7089	639	23	1		1	HECA	6	139487770	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	28351406	139487770	31627297	35	7590										
GPR141	0	genome.wustl.edu	37	chr7	37780129	37780129	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tcttttcctcctggtgaaaaTgaacacccggtcagtgacca	8	12	2	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	7	37780129	37780129	T	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.134	p.M45T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	56	0	0	47	15	24.19	-	-	-	C	37780129	T	C	37780129	3	2	125	1	0	0	0	0	1	0	0	0	6699	1464	51	5	136	5	GPR141	7	37780129	Missense_Mutation	SNP	T	TCGA-A7-A13E-01A-11D-A272-09		37780129	121358534	36	7591										
CUX1	0	genome.wustl.edu	37	chr7	101713690	101713690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gtctacaaaagattgattgaCgtcccaggtaagccccggca	10	11	1	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	7	101713690	101713690	C	T	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	silent	c.294	p.D98	0.998	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	14	0	0	8	8	50	-	-	-	T	101713690	C	T	101713690	2	4	125	1	0	0	0	0	0	0	0	1	4095	535	19	1		1	CUX1	7	101713690	Silent	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	63933561	101713690	57424973	37	7592										
TG	0	genome.wustl.edu	37	chr8	133935699	133935699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tctgtgtggacggcgaggggCggaggctgccatggtgggaa	21	7	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	8	133935699	133935699	C	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.4645	p.R1549W	0.074	superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	73	0	0	78	9	10.34	-	-	-	T	133935699	C	T	133935699	3	4	125	1	0	0	0	0	1	0	0	0	15908	759	27	1	4731	1	TG	8	133935699	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		133935699	12428323	38	7593										
CD72	0	genome.wustl.edu	37	chr9	35616245	35616245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgacttccagaaccctgttcGtctgctggagctgctgagac	11	12	1	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	9	35616245	35616245	G	A	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	missense	c.383	p.T128M	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	22	0	0	37	13	26	-	-	-	A	35616245	G	A	35616245	3	1	125	1	0	0	0	0	1	0	0	0	3063	1145	40	1	712	1	CD72	9	35616245	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		35616245	105597186	39	7594										
ROR2	0	genome.wustl.edu	37	chr9	94485838	94485838	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgcaaacaagcccactggccGgcgggctcttgtgattgctg	13	12	1	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	9	94485838	94485838	G	A	SNP	ROR2	ENST00000550066	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ROR2	HGNC	ENSG00000169071	69	0	0	36	22	37.93	-	-	-	A	94485838	G	A	94485838	1	1	125	0	1	0	0	0	0	0	0	0	13613	1131	39	1		1	ROR2	9	94485838	RNA	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	58869593	94485838	46727593	40	7595										
SPTAN1	0	genome.wustl.edu	37	chr9	131346108	131346108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	accagcaacagcaatttaatCgcaatgttgaggatattgaa	8	7	0	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	9	131346108	131346108	C	T	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.2053	p.R685C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	40	0	0	9	9	50	-	-	-	T	131346108	C	T	131346108	3	4	125	1	0	0	0	0	1	0	0	0	15208	884	31	1	2111	1	SPTAN1	9	131346108	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	36860270	131346108	9867323	41	7596										
HPSE2	0	genome.wustl.edu	37	chr10	100503739	100503739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	ggagttattgggattacgacGcagtgcatttagagcaaata	12	5	0	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	10	100503739	100503739	G	A	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	missense	c.685	p.R229C	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	52	0	0	19	21	52.5	-	-	-	A	100503739	G	A	100503739	3	1	125	1	0	0	0	0	1	0	0	0	7396	1087	38	1	1167	1	HPSE2	10	100503739	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		100503739	35031008	42	7597										
IGSF9B	0	genome.wustl.edu	37	chr11	133791086	133791086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgctgatgagctcgatgggcGtggtggcctctgcctcggcc	16	12	1	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	11	133791086	133791086	G	A	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.2534	p.T845M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	42	0	0	20	8	28.57	-	-	-	A	133791086	G	A	133791086	3	1	125	1	0	0	0	0	1	0	0	0	7660	1145	40	1	1523	1	IGSF9B	11	133791086	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		133791086	1215430	43	7598										
ARID2	0	genome.wustl.edu	37	chr12	46245837	46245837	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tacctccttcaaactcagggAaaattcaaagtgagactaat	6	9	3	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	12	46245837	46245837	A	G	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.3931	p.K1311E	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	23	0	0	9	8	47.06	-	-	-	G	46245837	A	G	46245837	3	3	125	1	0	0	0	0	1	0	0	0	917	247	9	5	3989	5	ARID2	12	46245837	Missense_Mutation	SNP	A	TCGA-A7-A13E-01A-11D-A272-09		46245837	87606058	44	7599										
IRAK3	0	genome.wustl.edu	37	chr12	66597504	66597504	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tccacagcagagagactttcAagcagctggctggatgttcg	12	10	1	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	12	66597504	66597504	A	C	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	1	known	silent	c.147	p.S49	0.963	pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	22	0	0	16	9	36	-	-	-	C	66597504	A	C	66597504	2	2	125	1	0	0	0	0	0	0	0	1	7878	117	5	5		5	IRAK3	12	66597504	Silent	SNP	A	TCGA-A7-A13E-01A-11D-A272-09	20351667	66597504	67254391	45	7600										
RPH3A	0	genome.wustl.edu	37	chr12	113321203	113321203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aggacatgcaaaggaagaccCtcaggtacctggcaggcaga	13	10	1	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	12	113321203	113321203	C	A	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.1432	p.L478I	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	34	0	0	1	12	92.31	-	-	-	A	113321203	C	A	113321203	3	1	125	1	0	0	0	0	1	0	0	0	13637	681	24	4	1486	4	RPH3A	12	113321203	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	46723699	113321203	20530692	46	7601										
USP12	0	genome.wustl.edu	37	chr13	27664021	27664021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cataaagctctaaaattaccGtttgtgtgcttcctgtttgc	7	9	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	13	27664021	27664021	G	A	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.733	p.R245W	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	29	0	0	15	3	16.67	-	-	-	A	27664021	G	A	27664021	3	1	125	1	0	0	0	0	1	0	0	0	17140	1159	40	1	395	1	USP12	13	27664021	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		27664021	87505857	47	7602										
PRMT5	0	genome.wustl.edu	37	chr14	23398540	23398540	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cccgctggacacgcggctccCaccagcacccccgaccgcca	9	23	0	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	14	23398540	23398540	C	A	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	missense	c.31	p.G11W	1.000	pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	104	0	0	43	34	44.16	-	-	-	A	23398540	C	A	23398540	3	1	125	1	0	0	0	0	1	0	0	0	12620	594	21	4	2013	4	PRMT5	14	23398540	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		23398540	83951000	48	7603										
SLC10A1	0	genome.wustl.edu	37	chr14	70243092	70243092	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gttgtggcagctgtgtagatCatttttgttttatctgtaaa	10	4	2	1			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	14	70243092	70243092	C	G	SNP	SLC10A1	ENST00000216540	human	ensembl	69_37n	-1	known	missense	c.957	p.M319I	0.998	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A1	HGNC	ENSG00000100652	49	0	0	21	11	34.38	-	-	-	G	70243092	C	G	70243092	3	3	125	1	0	0	0	0	1	0	0	0	14462	826	29	2	96	2	SLC10A1	14	70243092	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	46844552	70243092	37106448	49	7604										
IL21R	0	genome.wustl.edu	37	chr16	27441412	27441412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	catgccgcgtggctgggccgCccccttgctcctgctgctgc	13	18	0	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	16	27441412	27441412	C	T	SNP	IL21R	ENST00000337929	human	ensembl	69_37n	1	known	missense	c.20	p.A7V	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522	58	0	0	29	32	52.46	-	-	-	T	27441412	C	T	27441412	3	4	125	1	0	0	0	0	1	0	0	0	7725	739	26	4	22	4	IL21R	16	27441412	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		27441412	62913341	50	7605										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	36	0	0	32	10	23.81	-	-	-	T	7578406	C	T	7578406	3	4	125	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09		7578406	73616804	51	7606										
H3F3B	0	genome.wustl.edu	37	chr17	73774801	73774803	+	In_Frame_Del	DEL	CCT	CCT	-													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	caccaggtacgcttcgctagCctcctgttgaggacgagagc							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	17	73774801	73774803	CCT	-	DEL	H3F3B	ENST00000254810	human	ensembl	69_37n	-1	known	in_frame_del	c.286_284	p.E95in_frame_del	1.000:1.000:1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3B	HGNC	ENSG00000132475	49	0	0	31	9	22.5	-	-	-	-	73774803	CCT	-	73774801	7	5	125	1	0	1	0	1	0	0	0	0	6985	739	26	0	128	0	H3F3B	17	73774801	In_Frame_Del	DEL	CCT	TCGA-A7-A13E-01A-11D-A272-09	66196395	73774801	7420409	52	7607										
ACP5	0	genome.wustl.edu	37	chr19	11687535	11687535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gctgagggtggctcaccagcGcttggagatcttagagtatg	15	8	2	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	11687535	11687535	G	A	SNP	ACP5	ENST00000218758	human	ensembl	69_37n	-1	known	missense	c.385	p.R129C	1.000	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom	-	no_errors	ACP5	HGNC	ENSG00000102575	79	0	0	134	136	50	-	-	-	A	11687535	G	A	11687535	3	1	125	1	0	0	0	0	1	0	0	0	164	1087	38	1	604	1	ACP5	19	11687535	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09		11687535	47441448	53	7608										
AP1M1	0	genome.wustl.edu	37	chr19	16339652	16339652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	attcccgtgcccaatgatgcCgactcacccaagttcaagac	7	15	2	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	16339652	16339652	C	T	SNP	AP1M1	ENST00000586543	human	ensembl	69_37n	1	putative	missense	c.230	p.P77L	0.981	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,prints_Clathrin_mu,pfscan_Clathrin_mu_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AP1M1	HGNC	ENSG00000072958	96	0	0	15	114	88.37	-	-	-	T	16339652	C	T	16339652	3	4	125	1	0	0	0	0	1	0	0	0	735	639	23	1	1034	1	AP1M1	19	16339652	Missense_Mutation	SNP	C	TCGA-A7-A13E-01A-11D-A272-09	4652117	16339652	42789331	54	7609										
ZNF565	0	genome.wustl.edu	37	chr19	36674067	36674067	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	gtgtgagttctttgatgcagAatcagctgtgaatgctgcct	12	7	2	4			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	36674067	36674067	A	G	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	silent	c.801	p.I267	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	43	0	0	151	22	12.72	-	-	-	G	36674067	A	G	36674067	2	3	125	1	0	0	0	0	0	0	0	1	18092	242	9	5		5	ZNF565	19	36674067	Silent	SNP	A	TCGA-A7-A13E-01A-11D-A272-09	20334415	36674067	22454916	55	7610										
PLEKHG2	0	genome.wustl.edu	37	chr19	39915205	39915205	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	actcaggttccagctaccacAcctttgcccctgccacaagt	6	17	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	39915205	39915205	A	T	SNP	PLEKHG2	ENST00000205135	human	ensembl	69_37n	1	putative	missense	c.3035	p.H1012L	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHG2	HGNC	ENSG00000090924	89	0	0	383	162	29.51	-	-	-	T	39915205	A	T	39915205	3	4	125	1	0	0	0	0	1	0	0	0	12143	146	6	5	3502	5	PLEKHG2	19	39915205	Missense_Mutation	SNP	A	TCGA-A7-A13E-01A-11D-A272-09	3241138	39915205	19213778	56	7611										
PLA2G4C	0	genome.wustl.edu	37	chr19	48578070	48578070	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tgctcctgcttttccagggaGgtcctggtccaattctcgag	11	12	1	0			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	48578070	48578070	G	A	SNP	PLA2G4C	ENST00000413144	human	ensembl	69_37n	-1	known	silent	c.960	p.T320	0.000	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4C	HGNC	ENSG00000105499	84	0	0	7	50	87.72	-	-	-	A	48578070	G	A	48578070	2	1	125	1	0	0	0	0	0	0	0	1	12077	987	35	4		4	PLA2G4C	19	48578070	Silent	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	8662865	48578070	10550913	57	7612										
CCDC155	0	genome.wustl.edu	37	chr19	49913081	49913081	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	cagtgggaggaagtcatccaTgagaccagtgaggaaactga	14	7	1	3			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	19	49913081	49913081	T	G	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.1218	p.H406Q	0.000	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	46	0	0	7	32	82.05	-	-	-	G	49913081	T	G	49913081	3	3	125	1	0	0	0	0	1	0	0	0	2814	1461	51	5	1272	5	CCDC155	19	49913081	Missense_Mutation	SNP	T	TCGA-A7-A13E-01A-11D-A272-09	1335011	49913081	9215902	58	7613										
TLR8	0	genome.wustl.edu	37	chrX	12937861	12937862	+	Frame_Shift_Ins	INS	-	-	A													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	ttctgagcaacacccagatcINSaaatacattagtgaagaaga							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	X	12937861	12937862	-	A	INS	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	frame_shift_ins	c.702_703	p.Y235fs	0.115:0.064	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	50	0	0	13	2	13.33	-	-	-	A	12937862	-	A	12937861	7	5	125	1	0	1	1	0	0	0	0	0	16052	816	29	0	708	0	TLR8	23	12937861	Frame_Shift_Ins	INS	-	TCGA-A7-A13E-01A-11D-A272-09		12937861	142332699	59	7614										
FAM47C	0	genome.wustl.edu	37	chrX	37029580	37029580	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aagacgtcacagatgcatcgGaagaagattagatggttttg	12	5	1	5			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	X	37029580	37029580	G	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	nonsense	c.3097	p.E1033*	0.001	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	105	0	0	25	3	10.71	-	-	-	T	37029580	G	T	37029580	4	4	125	1	0	0	0	0	0	1	0	0	5617	1175	41	2	3099	2	FAM47C	23	37029580	Nonsense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	24091719	37029580	118240980	60	7615										
ZNF711	0	genome.wustl.edu	37	chrX	84525889	84525890	+	Frame_Shift_Ins	INS	-	-	T													0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	aagtcgacaaaacccatgaaINStttacagaatacacacgaag							TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	X	84525889	84525890	-	T	INS	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	frame_shift_ins	c.1365_1366	p.T456fs	1.000:1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	57	0	0	12	2	14.29	-	-	-	T	84525890	-	T	84525889	7	5	125	1	0	1	1	0	0	0	0	0	18212	98	4	0	1367	0	ZNF711	23	84525889	Frame_Shift_Ins	INS	-	TCGA-A7-A13E-01A-11D-A272-09	47496309	84525889	70744671	61	7616										
HTATSF1	0	genome.wustl.edu	37	chrX	135592323	135592323	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	tcagactctcgatggaagatGgtttggtggccgtcaaatca	12	8	4	2			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	X	135592323	135592323	G	C	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1007	p.W336S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	87	0	0	15	18	54.55	-	-	-	C	135592323	G	C	135592323	3	2	125	1	0	0	0	0	1	0	0	0	7487	1357	47	4	1037	4	HTATSF1	23	135592323	Missense_Mutation	SNP	G	TCGA-A7-A13E-01A-11D-A272-09	51066434	135592323	19678237	62	7617										
ATP6AP1	0	genome.wustl.edu	37	chrX	153660070	153660070	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0634920634920635	4	0.994628167771038	0.720558301831928	2.93370165745856	0.220816253787204	0.523809523809524	1	0	atactgaacctgactctcagTgagactttgctggccctgag	10	11	1	4			TCGA-A7-A13E-01A-11D-A272-09	TCGA-A7-A13E-10A-02D-A272-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6744be0d-06f5-48a8-b0b6-8cd72bba0aea	9bd41c60-2384-4ea1-99a2-cc4a8ebf19cc	X	153660070	153660070	T	C	SNP	ATP6AP1	ENST00000484908	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	44	0	0	20	3	13.04	-	-	-	C	153660070	T	C	153660070	1	2	125	0	1	0	0	0	0	0	0	0	1169	1711	59	5		5	ATP6AP1	23	153660070	RNA	SNP	T	TCGA-A7-A13E-01A-11D-A272-09	18067747	153660070	1610490	63	7618										
DDR2	0	genome.wustl.edu	37	chr1	162743378	162743378	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ctccgagcagatgccaacaaGaatgccaggtctgtggtcta	11	11	2	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	162743378	162743378	G	C	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.1848	p.K616N	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	150	0	0	130	126	49.22	-	-	-	C	162743378	G	C	162743378	3	2	126	1	0	0	0	0	1	0	0	0	4368	933	33	2	1894	2	DDR2	1	162743378	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09		162743378	86507243	1	7619										
OBSCN	0	genome.wustl.edu	37	chr1	228506585	228506585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	tagtcttttgccttcctcagTggcactgagcccagcctctg	9	14	3	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	228506585	228506585	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.14132	p.V4711A	0.993	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	20	0	0	27	5	15.62	-	-	-	C	228506585	T	C	228506585	3	2	126	1	0	0	0	0	1	0	0	0	10885	1710	59	5	14342	5	OBSCN	1	228506585	Missense_Mutation	SNP	T	TCGA-A7-A13F-01A-11D-A12Q-09	65763207	228506585	20744036	2	7620										
ATAD2B	0	genome.wustl.edu	37	chr2	24092569	24092569	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ccatgctctttgatttccttCtttcaaagcgttcctcatca	4	13	5	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	24092569	24092569	C	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.1040	p.R347I	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	485	0	0	358	112	23.83	-	-	-	A	24092569	C	A	24092569	3	1	126	1	0	0	0	0	1	0	0	0	1076	913	32	2	3416	2	ATAD2B	2	24092569	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		24092569	219106804	3	7621										
BIRC6	0	genome.wustl.edu	37	chr2	32822992	32822992	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gcctctgtcttcatcctctaGtgtgtttgtacgctgtgatg	10	10	4	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	32822992	32822992	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.13787	p.S4596I	1.000	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	195	0	0	93	89	48.9	-	-	-	T	32822992	G	T	32822992	3	4	126	1	0	0	0	0	1	0	0	0	1443	1029	36	4	14061	4	BIRC6	2	32822992	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	8730423	32822992	210376381	4	7622										
PRKCE	0	genome.wustl.edu	37	chr2	46070194	46070194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	catcgatctctcagggtcgtCgggtgaaggtaggagagcgt	16	8	2	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	46070194	46070194	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	missense	c.404	p.S135L	0.749	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	503	0	0	300	96	24.24	-	-	-	T	46070194	C	T	46070194	3	4	126	1	0	0	0	0	1	0	0	0	12592	893	31	1	410	1	PRKCE	2	46070194	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09	13247202	46070194	197129179	5	7623										
YSK4	0	genome.wustl.edu	37	chr2	135745195	135745195	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gtaatgaaactctttttgaaGcagctttattatttctcatc	5	7	2	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	135745195	135745195	G	C	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.1247	p.A416G	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	215	0	0	152	41	21.24	-	-	-	C	135745195	G	C	135745195	3	2	126	1	0	0	0	0	1	0	0	0	17592	971	34	4	2755	4	YSK4	2	135745195	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	89675001	135745195	107454178	6	7624										
TRPC1	0	genome.wustl.edu	37	chr3	142503607	142503607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ttggtttggacagatgtcggGttaccgacgcaagcccacct	12	11	0	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	3	142503607	142503607	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.1022	p.G341D	1.000	tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	226	1	0.44	196	142	42.01	-	-	-	A	142503607	G	A	142503607	3	1	126	1	0	0	0	0	1	0	0	0	16674	1261	44	4	942	4	TRPC1	3	142503607	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09		142503607	55518823	7	7625										
DSPP	0	genome.wustl.edu	37	chr4	88535329	88535329	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	aaagataatggcaatggcagTgactcaaaaggagcagaaga	12	5	1	4			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	4	88535329	88535329	T	A	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.1515	p.S505R	0.998	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	276	0	0	242	68	21.86	-	-	-	A	88535329	T	A	88535329	3	1	126	1	0	0	0	0	1	0	0	0	4817	1693	59	5	1529	5	DSPP	4	88535329	Missense_Mutation	SNP	T	TCGA-A7-A13F-01A-11D-A12Q-09		88535329	102618947	8	7626										
FAM169A	0	genome.wustl.edu	37	chr5	74077801	74077803	+	In_Frame_Del	DEL	CAT	CAT	-													0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	tcatcagatgtgccttcatcCatcaacatttctgagtcagg							TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	5	74077801	74077803	CAT	-	DEL	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	in_frame_del	c.1497_1495	p.M499in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	76	0	0	75	20	21.05	-	-	-	-	74077803	CAT	-	74077801	7	5	126	1	0	1	0	1	0	0	0	0	5527	594	21	0	519	0	FAM169A	5	74077801	In_Frame_Del	DEL	CAT	TCGA-A7-A13F-01A-11D-A12Q-09		74077801	106837459	9	7627										
TFAP2A	0	genome.wustl.edu	37	chr6	10410138	10410138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ttgcgcggcctcttaccgggAcctcctcgatggcgtgaggt	14	13	1	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	10410138	10410138	A	G	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.476	p.V159A	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	37	0	0	37	9	19.57	-	-	-	G	10410138	A	G	10410138	3	3	126	1	0	0	0	0	1	0	0	0	15882	275	10	5	861	5	TFAP2A	6	10410138	Missense_Mutation	SNP	A	TCGA-A7-A13F-01A-11D-A12Q-09		10410138	160704929	10	7628										
FAM46A	0	genome.wustl.edu	37	chr6	82459981	82459982	+	Frame_Shift_Del	DEL	TC	TC	-													0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gattattgtggggtgaaatgTctcagtcattgggttctctg							TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	82459981	82459982	TC	-	DEL	FAM46A	ENST00000369756	human	ensembl	69_37n	-1	known	frame_shift_del	c.1003_1002	p.E334fs	1.000:1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46A	HGNC	ENSG00000112773	168	0	0	94	14	12.96	-	-	-	-	82459982	TC	-	82459981	7	5	126	1	0	1	0	1	0	0	0	0	5611	1667	58	0	572	0	FAM46A	6	82459981	Frame_Shift_Del	DEL	TC	TCGA-A7-A13F-01A-11D-A12Q-09	72049843	82459981	88655086	11	7629										
FAM26D	0	genome.wustl.edu	37	chr6	116879271	116879271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	tatttcagtacccactctttTatgcatgggtgatgacttgc	8	9	2	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	116879271	116879271	T	C	SNP	FAM26D	ENST00000368596	human	ensembl	69_37n	1	known	missense	c.842	p.L281S	0.033	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	215	0	0	56	89	61.38	-	-	-	C	116879271	T	C	116879271	3	2	126	1	0	0	0	0	1	0	0	0	5595	1764	61	5	286	5	FAM26D	6	116879271	Missense_Mutation	SNP	T	TCGA-A7-A13F-01A-11D-A12Q-09	34419290	116879271	54235796	12	7630										
ABCB8	0	genome.wustl.edu	37	chr7	150741305	150741305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	atggccgatggccgtgtctgGgaggttagttgtcctggggg	19	7	1	0			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	7	150741305	150741305	G	T	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	missense	c.2064	p.W688C	0.995	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	112	0	0	93	20	17.7	-	-	-	T	150741305	G	T	150741305	3	4	126	1	0	0	0	0	1	0	0	0	47	1241	43	4	2071	4	ABCB8	7	150741305	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09		150741305	8397358	13	7631										
PEX2	0	genome.wustl.edu	37	chr8	77895909	77895909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	cagaatgaatacctaggagaCgttctgtcaaagttgcaaac	9	8	2	3			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-11A-42D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	9b12ed02-9183-4b84-b638-fd56f00f411a	8	77895909	77895909	C	T	SNP	PEX2	ENST00000357039	human	ensembl	69_37n	-1	known	missense	c.506	p.R169H	1.000	pfam_Pex_N	pfam_Pex_N,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX2	HGNC	ENSG00000164751	138	0	0	143	26	15.38	-	-	-	T	77895909	C	T	77895909	3	4	126	1	0	0	0	0	1	0	0	0	11819	536	19	1	415	1	PEX2	8	77895909	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		77895909	68468113	14	7632										
KCNIP2	0	genome.wustl.edu	37	chr10	103588945	103588945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ggtggacaattcaaattcatCgtccacgctgtctgcgggag	12	10	3	0			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	10	103588945	103588945	C	T	SNP	KCNIP2	ENST00000461105	human	ensembl	69_37n	-1	known	missense	c.280	p.D94N	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	KCNIP2	HGNC	ENSG00000120049	58	0	0	44	18	29.03	-	-	-	T	103588945	C	T	103588945	3	4	126	1	0	0	0	0	1	0	0	0	8094	884	31	1	673	1	KCNIP2	10	103588945	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		103588945	31945802	15	7633										
MUC2	0	genome.wustl.edu	37	chr11	1101090	1101090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	agaggtgcagccagaagcccGttacccactgcgtggaagac	13	12	0	3			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	11	1101090	1101090	G	A	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.7489	p.V2497I	0.000	smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	102	0	0	68	14	16.87	-	-	-	A	1101090	G	A	1101090	3	1	126	1	0	0	0	0	1	0	0	0	10047	1145	40	1	7643	1	MUC2	11	1101090	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09		1101090	133905426	16	7634										
OR5R1	0	genome.wustl.edu	37	chr11	56185039	56185039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	agagcggatccttaggatagCggcaataataaagatgtagg	13	5	0	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	11	56185039	56185039	C	T	SNP	OR5R1	ENST00000312253	human	ensembl	69_37n	-1	known	missense	c.670	p.A224T	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	242	0	0	118	111	48.47	-	-	-	T	56185039	C	T	56185039	3	4	126	1	0	0	0	0	1	0	0	0	11253	768	27	1	306	1	OR5R1	11	56185039	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09	55083949	56185039	78821477	17	7635										
BAZ2A	0	genome.wustl.edu	37	chr12	56992725	56992725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gatgcgccggtacccactcaCcaaacgtgggttcacaggct	11	14	2	0			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	12	56992725	56992725	C	A	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.5479	p.V1827L	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	83	0	0	69	41	37.27	-	-	-	A	56992725	C	A	56992725	3	1	126	1	0	0	0	0	1	0	0	0	1335	507	18	4	246	4	BAZ2A	12	56992725	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		56992725	76859170	18	7636										
RPGRIP1	0	genome.wustl.edu	37	chr14	21796707	21796707	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gagctactcaagaagaaaacAtggcaaaagaataggtgttc	10	6	1	3			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	14	21796707	21796707	A	T	SNP	RPGRIP1	ENST00000206660	human	ensembl	69_37n	1	known	missense	c.3020	p.H1007L	1.000	NULL	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	216	0	0	41	111	73.03	-	-	-	T	21796707	A	T	21796707	3	4	126	1	0	0	0	0	1	0	0	0	13635	217	8	5	3090	5	RPGRIP1	14	21796707	Missense_Mutation	SNP	A	TCGA-A7-A13F-01A-11D-A12Q-09		21796707	85552833	19	7637										
LTBP2	0	genome.wustl.edu	37	chr14	74975371	74975371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	cacagacagaagaaagacccGtggctgttgaggcactcgcc	12	12	0	5			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	14	74975371	74975371	G	A	SNP	LTBP2	ENST00000556206	human	ensembl	69_37n	-1	novel	missense	c.385	p.R129W	0.304	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon	LTBP2	HGNC	ENSG00000119681	64	0	0	22	13	37.14	-	-	-	A	74975371	G	A	74975371	3	1	126	1	0	0	0	0	1	0	0	0	9140	1136	40	1	1929	1	LTBP2	14	74975371	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	53178664	74975371	32374169	20	7638										
CAMKK1	0	genome.wustl.edu	37	chr17	3776749	3776749	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	tgacgccagtggcccatacaTccaaggcctggaaagaaaca	10	12	0	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	3776749	3776749	T	G	SNP	CAMKK1	ENST00000381771	human	ensembl	69_37n	-1	known	missense	c.1118	p.D373A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	185	0	0	99	21	17.5	-	-	-	G	3776749	T	G	3776749	3	3	126	1	0	0	0	0	1	0	0	0	2631	1435	50	5	541	5	CAMKK1	17	3776749	Missense_Mutation	SNP	T	TCGA-A7-A13F-01A-11D-A12Q-09		3776749	77418461	21	7639										
SMCR8	0	genome.wustl.edu	37	chr17	18221324	18221324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	tggtcctgggggaagatgagGccatagtcaggaaactcgtg	16	7	1	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	18221324	18221324	G	A	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	missense	c.2221	p.A741T	0.280	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	156	0	0	77	35	31.25	-	-	-	A	18221324	G	A	18221324	3	1	126	1	0	0	0	0	1	0	0	0	14881	1203	42	4	2223	4	SMCR8	17	18221324	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	14444575	18221324	62973886	22	7640										
C17orf101	0	genome.wustl.edu	37	chr17	80369359	80369359	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ccgctccgcttcctccctggTgatgacgacatcggtgacac	10	16	0	3			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	80369359	80369359	T	A	SNP	C17orf101	ENST00000329197	human	ensembl	69_37n	-1	known	missense	c.352	p.T118S	1.000	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	C17orf101	HGNC	ENSG00000181396	81	0	0	61	19	23.75	-	-	-	A	80369359	T	A	80369359	3	1	126	1	0	0	0	0	1	0	0	0	1861	1696	59	5	812	5	C17orf101	17	80369359	Missense_Mutation	SNP	T	TCGA-A7-A13F-01A-11D-A12Q-09	62148035	80369359	825851	23	7641										
VAV1	0	genome.wustl.edu	37	chr19	6833625	6833625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gagggtccctccatgtggccGacatgggcaaggtacgagtg	16	10	0	0			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	6833625	6833625	G	A	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	missense	c.1697	p.R566Q	0.665	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	384	0	0	303	80	20.89	-	-	-	A	6833625	G	A	6833625	3	1	126	1	0	0	0	0	1	0	0	0	17228	1058	37	1	1763	1	VAV1	19	6833625	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09		6833625	52295358	24	7642										
DPY19L3	0	genome.wustl.edu	37	chr19	32968544	32968544	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ctatgaagacagcagcctgaGagagcggaccagagcggtga	15	9	0	6			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	32968544	32968544	G	A	SNP	DPY19L3	ENST00000342179	human	ensembl	69_37n	1	known	missense	c.1814	p.R605K	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	150	1	0.66	122	38	23.75	-	-	-	A	32968544	G	A	32968544	3	1	126	1	0	0	0	0	1	0	0	0	4777	942	33	2	1876	2	DPY19L3	19	32968544	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	26134919	32968544	26160439	25	7643										
SPHK2	0	genome.wustl.edu	37	chr19	49129267	49129267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	agcaccccgctcctccatggCgagtttggctcctacccagc	9	18	0	0			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	49129267	49129267	C	T	SNP	SPHK2	ENST00000443164	human	ensembl	69_37n	1	known	silent	c.345	p.G115	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176	18	0	0	13	5	27.78	-	-	-	T	49129267	C	T	49129267	2	4	126	1	0	0	0	0	0	0	0	1	15138	755	27	1		1	SPHK2	19	49129267	Silent	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09	16160723	49129267	9999716	26	7644										
CNOT3	0	genome.wustl.edu	37	chr19	54650352	54650352	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	ctcaggaaaactctgaagatGataagaagaggggacgttcc	12	7	2	5			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	54650352	54650352	G	C	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.853	p.D285H	1.000	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	211	0	0	128	36	21.95	-	-	-	C	54650352	G	C	54650352	3	2	126	1	0	0	0	0	1	0	0	0	3650	1290	45	2	887	2	CNOT3	19	54650352	Missense_Mutation	SNP	G	TCGA-A7-A13F-01A-11D-A12Q-09	5521085	54650352	4478631	27	7645										
SNAI1	0	genome.wustl.edu	37	chr20	48604456	48604456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	gcagccgtgccttcgctgacCgctccaacctgcgggcccac	11	19	0	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	20	48604456	48604456	C	T	SNP	SNAI1	ENST00000244050	human	ensembl	69_37n	1	known	missense	c.658	p.R220C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI1	HGNC	ENSG00000124216	165	0	0	83	34	29.06	-	-	-	T	48604456	C	T	48604456	3	4	126	1	0	0	0	0	1	0	0	0	14915	652	23	1	668	1	SNAI1	20	48604456	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		48604456	14421064	28	7646										
WDR44	0	genome.wustl.edu	37	chrX	117540916	117540916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	aagaccagttaaattcaaagCagcacacggtttcaaaggac	8	9	2	1			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	X	117540916	117540916	C	T	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1460	p.A487V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	468	0	0	292	153	34.38	-	-	-	T	117540916	C	T	117540916	3	4	126	1	0	0	0	0	1	0	0	0	17393	710	25	4	1498	4	WDR44	23	117540916	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09		117540916	37729644	29	7647										
BCORL1	0	genome.wustl.edu	37	chrX	129150177	129150177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.827819862835829	1.19263089851325	4.50549450549451	0.482731554160126	1	1	0	aaggccgtggtccggagttcCcacagacccaaggtgagtgc	14	12	0	2			TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	X	129150177	129150177	C	T	SNP	BCORL1	ENST00000441294	human	ensembl	69_37n	1	known	missense	c.1735	p.P579S	0.070	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCORL1	HGNC	ENSG00000085185	20	0	0	22	5	18.52	-	-	-	T	129150177	C	T	129150177	3	4	126	1	0	0	0	0	1	0	0	0	1391	610	22	4	3439	4	BCORL1	23	129150177	Missense_Mutation	SNP	C	TCGA-A7-A13F-01A-11D-A12Q-09	11609261	129150177	26120383	30	7648										
PRAMEF1	0	genome.wustl.edu	37	chr1	12853415	12853415	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	cccagactactggagctggcAgggcagagcctgctgagaga	15	11	0	4			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	12853415	12853415	A	G	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	silent	c.39	p.A13	0.003	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	102	1	0.97	65	8	10.96	-	-	-	G	12853415	A	G	12853415	2	3	127	1	0	0	0	0	0	0	0	1	12502	175	7	5		5	PRAMEF1	1	12853415	Silent	SNP	A	TCGA-A7-A13G-01A-11D-A13L-09		12853415	236397206	1	7649										
NBPF1	0	genome.wustl.edu	37	chr1	16905869	16905869	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	gctgataccaccatgctgacGtttgtggcagaagaggtggg	15	8	0	4			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	16905869	16905869	G	A	SNP	NBPF1	ENST00000430580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.241	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	32	0	0	30	6	16.67	-	-	-	A	16905869	G	A	16905869	1	1	127	0	1	0	0	0	0	0	0	0	10264	1136	40	1		1	NBPF1	1	16905869	RNA	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	4052454	16905869	232344752	2	7650										
USP48	0	genome.wustl.edu	37	chr1	22073561	22073561	+	Frame_Shift_Del	DEL	T	T	-													0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	tcctcagtaaaaatattaccTttatgttccacataaggctc							TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	22073561	22073561	T	-	DEL	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	frame_shift_del	c.990	p.G331fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	56	0	0	69	48	40.34	-	-	-	-	22073561	T	-	22073561	7	5	127	1	0	1	0	1	0	0	0	0	17176	1623	56	0	2205	0	USP48	1	22073561	Frame_Shift_Del	DEL	T	TCGA-A7-A13G-01A-11D-A13L-09	5167692	22073561	227177060	3	7651										
GBP5	0	genome.wustl.edu	37	chr1	89732807	89732807	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ggtcgggtgagtttcttgccTtgagcagatctgtcagttct	13	8	4	3			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	89732807	89732807	T	C	SNP	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	missense	c.458	p.K153R	0.003	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	102	0	0	42	40	48.78	-	-	-	C	89732807	T	C	89732807	3	2	127	1	0	0	0	0	1	0	0	0	6327	1609	56	5	1330	5	GBP5	1	89732807	Missense_Mutation	SNP	T	TCGA-A7-A13G-01A-11D-A13L-09	67659246	89732807	159517814	4	7652										
PLEKHA6	0	genome.wustl.edu	37	chr1	204210567	204210567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ccactgctgatggggtcaccTcatcatcagtgggcgatttt	11	11	4	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	204210567	204210567	T	C	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.2345	p.E782G	0.046	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	47	0	0	48	15	23.81	-	-	-	C	204210567	T	C	204210567	3	2	127	1	0	0	0	0	1	0	0	0	12134	1551	54	5	825	5	PLEKHA6	1	204210567	Missense_Mutation	SNP	T	TCGA-A7-A13G-01A-11D-A13L-09	114477760	204210567	45040054	5	7653										
DYSF	0	genome.wustl.edu	37	chr2	71891541	71891541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	gctgtccaagtttggggctcGctgtggactcccacagacct	12	13	0	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	71891541	71891541	G	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.5123	p.R1708L	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	43	0	0	33	4	10.81	-	-	-	T	71891541	G	T	71891541	3	4	127	1	0	0	0	0	1	0	0	0	4894	1087	38	3	5467	3	DYSF	2	71891541	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09		71891541	171307832	6	7654										
VWC2L	0	genome.wustl.edu	37	chr2	215440482	215440482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	acatctgtcattgtcacaacGgggactggtggaagcctgct	12	10	3	0			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	215440482	215440482	G	A	SNP	VWC2L	ENST00000312504	human	ensembl	69_37n	1	known	missense	c.607	p.G203R	1.000	NULL	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453	121	0	0	40	37	48.05	-	-	-	A	215440482	G	A	215440482	3	1	127	1	0	0	0	0	1	0	0	0	17341	1116	39	1	617	1	VWC2L	2	215440482	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	143548941	215440482	27758891	7	7655										
PPP1R7	0	genome.wustl.edu	37	chr2	242098694	242098694	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	aggagctacagagtcttcgaGagctggatctttacgacaac	11	9	2	2			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	242098694	242098694	G	A	SNP	PPP1R7	ENST00000234038	human	ensembl	69_37n	1	known	missense	c.370	p.E124K	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	PPP1R7	HGNC	ENSG00000115685	84	0	0	40	22	34.92	-	-	-	A	242098694	G	A	242098694	3	1	127	1	0	0	0	0	1	0	0	0	12453	943	33	2	388	2	PPP1R7	2	242098694	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	26658212	242098694	1100679	8	7656										
PTPN23	0	genome.wustl.edu	37	chr3	47451185	47451185	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ccctggtggcctcgtatgaaGcctatgaggacctgatgaag	13	10	0	4			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	3	47451185	47451185	G	C	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.1990	p.A664P	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	56	0	0	12	12	50	-	-	-	C	47451185	G	C	47451185	3	2	127	1	0	0	0	0	1	0	0	0	12871	971	34	4	2064	4	PTPN23	3	47451185	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09		47451185	150571245	9	7657										
CSN1S1	0	genome.wustl.edu	37	chr4	70810640	70810640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	atccacaaatcatgcagtatGttcctttcccaccgttttcc	4	14	1	0			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	4	70810640	70810640	G	A	SNP	CSN1S1	ENST00000246891	human	ensembl	69_37n	1	known	missense	c.475	p.V159I	0.000	NULL	NULL	-	no_errors	CSN1S1	HGNC	ENSG00000126545	281	1	0.35	83	63	43.15	-	-	-	A	70810640	G	A	70810640	3	1	127	1	0	0	0	0	1	0	0	0	3979	1377	48	4	529	4	CSN1S1	4	70810640	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09		70810640	120343636	10	7658										
LRBA	0	genome.wustl.edu	37	chr4	151223869	151223869	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ctgagagaatgtagcaatttCccccaatatatgactcagaa	7	9	1	4			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	4	151223869	151223869	C	G	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.7958	p.G2653A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	121	0	0	60	48	44.44	-	-	-	G	151223869	C	G	151223869	3	3	127	1	0	0	0	0	1	0	0	0	8997	855	30	2	653	2	LRBA	4	151223869	Missense_Mutation	SNP	C	TCGA-A7-A13G-01A-11D-A13L-09	80413229	151223869	39930407	11	7659										
MEF2C	0	genome.wustl.edu	37	chr5	88047758	88047758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	agggtgagccagtggcaataGgttggggtttcccagtgagc	17	7	0	2			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	5	88047758	88047758	G	A	SNP	MEF2C	ENST00000437473	human	ensembl	69_37n	-1	known	silent	c.505	p.L169	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	210	0	0	82	50	37.88	-	-	-	A	88047758	G	A	88047758	2	1	127	1	0	0	0	0	0	0	0	1	9528	991	35	4		4	MEF2C	5	88047758	Silent	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09		88047758	92867502	12	7660										
CDC25C	0	genome.wustl.edu	37	chr5	137666850	137666850	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ttccttcctctcttgtggatGagaagagttccgtagacatg	10	9	1	3			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	5	137666850	137666850	G	A	SNP	CDC25C	ENST00000323760	human	ensembl	69_37n	-1	known	missense	c.20	p.S7L	0.084	NULL	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402	80	0	0	46	29	38.67	-	-	-	A	137666850	G	A	137666850	3	1	127	1	0	0	0	0	1	0	0	0	3093	1294	45	2	1453	2	CDC25C	5	137666850	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	49619092	137666850	43248410	13	7661										
FNDC1	0	genome.wustl.edu	37	chr6	159635993	159635993	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	taagaaaaggaagtgcccaaCaagcccttgcgtgtgcgtgt	12	9	0	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	6	159635993	159635993	C	T	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	1	novel	nonsense	c.352	p.Q118*	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	62	0	0	28	18	39.13	-	-	-	T	159635993	C	T	159635993	4	4	127	1	0	0	0	0	0	1	0	0	6014	477	17	4	495	4	FNDC1	6	159635993	Nonsense_Mutation	SNP	C	TCGA-A7-A13G-01A-11D-A13L-09		159635993	11479074	14	7662										
CHD7	0	genome.wustl.edu	37	chr8	61777594	61777594	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	gggttttgttcctgagtcgaTgtttgaccgccttctcactg	11	10	1	2			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	8	61777594	61777594	T	A	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.8096	p.M2699K	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	20	0	0	5	8	61.54	-	-	-	A	61777594	T	A	61777594	3	1	127	1	0	0	0	0	1	0	0	0	3359	1464	51	5	8242	5	CHD7	8	61777594	Missense_Mutation	SNP	T	TCGA-A7-A13G-01A-11D-A13L-09		61777594	84586428	15	7663										
GPT	0	genome.wustl.edu	37	chr8	145730243	145730243	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	gcggagcgcatcttgcaggcGtgtgggggccacagtctggg	19	10	2	0			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	8	145730243	145730243	G	T	SNP	GPT	ENST00000394955	human	ensembl	69_37n	1	known	silent	c.342	p.A114	0.005	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	GPT	HGNC	ENSG00000167701	49	0	0	21	16	43.24	-	-	-	T	145730243	G	T	145730243	2	4	127	1	0	0	0	0	0	0	0	1	6788	1132	40	3		3	GPT	8	145730243	Silent	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	83952649	145730243	633779	16	7664										
DHTKD1	0	genome.wustl.edu	37	chr10	12111089	12111089	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ctcggccgggctctccctctCttctggcgtggctaccagac	11	17	3	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	10	12111089	12111089	C	G	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	silent	c.57	p.L19	0.000	pirsf_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	16	0	0	8	6	42.86	-	-	-	G	12111089	C	G	12111089	2	3	127	1	0	0	0	0	0	0	0	1	4536	900	32	2		2	DHTKD1	10	12111089	Silent	SNP	C	TCGA-A7-A13G-01A-11D-A13L-09		12111089	123423658	17	7665										
ASAH2B	0	genome.wustl.edu	37	chr10	52502735	52502735	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	acgcattatctgcttacattCagctcttcagaaaccttgct	5	12	4	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	10	52502735	52502735	C	T	SNP	ASAH2B	ENST00000374006	human	ensembl	69_37n	1	known	silent	c.51	p.F17	1.000	NULL	pfam_Ceramidase_alk	-	no_errors	ASAH2B	HGNC	ENSG00000204147	318	0	0	86	71	44.94	-	-	-	T	52502735	C	T	52502735	2	4	127	1	0	0	0	0	0	0	0	1	1012	825	29	2		2	ASAH2B	10	52502735	Silent	SNP	C	TCGA-A7-A13G-01A-11D-A13L-09	40391646	52502735	83032012	18	7666										
KCNK4	0	genome.wustl.edu	37	chr11	64064626	64064626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ccctgcgcacagatgccgggCgcctcttctgcatcttttat	9	15	3	1			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	64064626	64064626	C	T	SNP	KCNK4	ENST00000394525	human	ensembl	69_37n	1	known	missense	c.349	p.R117C	1.000	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450	31	0	0	17	13	43.33	-	-	-	T	64064626	C	T	64064626	3	4	127	1	0	0	0	0	1	0	0	0	8122	768	27	1	359	1	KCNK4	11	64064626	Missense_Mutation	SNP	C	TCGA-A7-A13G-01A-11D-A13L-09		64064626	70941890	19	7667										
FAT3	0	genome.wustl.edu	37	chr11	92531298	92531298	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	ccctcatttatgaagtcaaaGatggagacattaatgggatc	9	7	2	3			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	92531298	92531298	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.5119	p.D1707Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	90	0	0	30	30	50	-	-	-	T	92531298	G	T	92531298	3	4	127	1	0	0	0	0	1	0	0	0	5737	942	33	2	5153	2	FAT3	11	92531298	Missense_Mutation	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09	28466672	92531298	42475218	20	7668										
CD163L1	0	genome.wustl.edu	37	chr12	7550864	7550864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	caagaacaagtcttacctgaGcaggttacaatcacatcctc	6	12	2	2			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	12	7550864	7550864	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	silent	c.1725	p.C575	0.998	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	128	0	0	59	42	41.58	-	-	-	A	7550864	G	A	7550864	2	1	127	1	0	0	0	0	0	0	0	1	2997	963	34	4		4	CD163L1	12	7550864	Silent	SNP	G	TCGA-A7-A13G-01A-11D-A13L-09		7550864	126301031	21	7669										
RABEP1	0	genome.wustl.edu	37	chr17	5266266	5266267	+	Frame_Shift_Del	DEL	AC	AC	-													0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	atgtgttccaattacgaaaaAcagttacaaggaattcagat							TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	17	5266266	5266267	AC	-	DEL	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	frame_shift_del	c.1623_1624	p.Q542fs	1.000:1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	129	0	0	64	35	35.35	-	-	-	-	5266267	AC	-	5266266	7	5	127	1	0	1	0	1	0	0	0	0	13044	40	2	0	1661	0	RABEP1	17	5266266	Frame_Shift_Del	DEL	AC	TCGA-A7-A13G-01A-11D-A13L-09		5266266	75928944	22	7670										
ZNF180	0	genome.wustl.edu	37	chr19	44981511	44981511	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.418121773458281	1.87076923076923	2.02666666666667	1.824	0.523809523809524	1	0	gagttctctgatgggaaacaAggtgcgagctccggctgaag	15	8	1	2			TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	19	44981511	44981511	A	T	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	missense	c.1187	p.L396H	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	74	0	0	41	38	48.1	-	-	-	T	44981511	A	T	44981511	3	4	127	1	0	0	0	0	1	0	0	0	17844	72	3	5	895	5	ZNF180	19	44981511	Missense_Mutation	SNP	A	TCGA-A7-A13G-01A-11D-A13L-09		44981511	14147472	23	7671										
GMEB1	0	genome.wustl.edu	37	chr1	29041512	29041512	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	taggtcattcaatgtcctaaTcatcttacaccaagaaagta	5	9	4	1			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	1	29041512	29041512	T	C	SNP	GMEB1	ENST00000480454	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.106	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419	33	0	0	12	7	36.84	-	-	-	C	29041512	T	C	29041512	1	2	128	0	1	0	0	0	0	0	0	0	6539	1450	50	5		5	GMEB1	1	29041512	RNA	SNP	T	TCGA-A7-A13H-01A-11D-A228-09		29041512	220209109	1	7672										
SLC3A1	0	genome.wustl.edu	37	chr2	44540999	44540999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	ccttcgctcaaagtcaccaaTgcagtgggacaatagttcaa	8	11	3	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	2	44540999	44540999	T	C	SNP	SLC3A1	ENST00000260649	human	ensembl	69_37n	1	known	missense	c.1526	p.M509T	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079	86	0	0	49	11	18.33	-	-	-	C	44540999	T	C	44540999	3	2	128	1	0	0	0	0	1	0	0	0	14715	1464	51	5	1560	5	SLC3A1	2	44540999	Missense_Mutation	SNP	T	TCGA-A7-A13H-01A-11D-A228-09		44540999	198658374	2	7673										
ATG4B	0	genome.wustl.edu	37	chr2	242590740	242590740	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	tttacatacaggaaaaacttTccagccattggtaagtactc	6	9	0	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	2	242590740	242590740	T	C	SNP	ATG4B	ENST00000474739	human	ensembl	69_37n	1	known	missense	c.41	p.F14S	1.000	NULL	pfam_Peptidase_C54	-	no_errors	ATG4B	HGNC	ENSG00000168397	90	0	0	58	12	17.14	-	-	-	C	242590740	T	C	242590740	3	2	128	1	0	0	0	0	1	0	0	0	1101	1780	62	5	184	5	ATG4B	2	242590740	Missense_Mutation	SNP	T	TCGA-A7-A13H-01A-11D-A228-09	198049741	242590740	608633	3	7674										
MUC4	0	genome.wustl.edu	37	chr3	195510227	195510228	+	Frame_Shift_Ins	INS	-	-	G													0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cctgtggatactgaggaagtINSctcggtgacaagaagagggg							TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	3	195510227	195510228	-	G	INS	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8224_8223	p.T2741fs	0.000:0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	50	0	0	31	8	20.51	-	-	-	G	195510228	-	G	195510227	7	5	128	1	0	1	1	0	0	0	0	0	10050	1667	58	0		0	MUC4	3	195510227	Frame_Shift_Ins	INS	-	TCGA-A7-A13H-01A-11D-A228-09		195510227	2512203	4	7675	59	2								
MUC4	0	genome.wustl.edu	37	chr3	195510230	195510230	+	Frame_Shift_Del	DEL	C	C	-													0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	tgtggatactgaggaagtctCggtgacaagaagaggggtgg							TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	3	195510230	195510230	C	-	DEL	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	frame_shift_del	c.8221	p.E2741fs	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	46	0	0	28	8	22.22	-	-	-	-	195510230	C	-	195510230	7	5	128	1	0	1	0	1	0	0	0	0	10050	893	31	0		0	MUC4	3	195510230	Frame_Shift_Del	DEL	C	TCGA-A7-A13H-01A-11D-A228-09	3	195510230	2512200	5	7676	59	2								
SPEF2	0	genome.wustl.edu	37	chr5	35646801	35646801	+	Frame_Shift_Del	DEL	A	A	-													0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	agaagacgacaaaatgaaatAatggccaaaatccaagcagc							TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	5	35646801	35646801	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	frame_shift_del	c.618	p.M207fs	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	23	0	0	6	2	25	-	-	-	-	35646801	A	-	35646801	7	5	128	1	0	1	0	1	0	0	0	0	15126	352	13	0	636	0	SPEF2	5	35646801	Frame_Shift_Del	DEL	A	TCGA-A7-A13H-01A-11D-A228-09		35646801	145268459	6	7677										
TRIM10	0	genome.wustl.edu	37	chr6	30122026	30122026	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	gccgaagctcccccttccgcTgcacatcctcgctcaccacg	7	21	1	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	6	30122026	30122026	T	A	SNP	TRIM10	ENST00000449742	human	ensembl	69_37n	-1	known	missense	c.1166	p.Q389L	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613	57	0	0	30	13	30.23	-	-	-	A	30122026	T	A	30122026	3	1	128	1	0	0	0	0	1	0	0	0	16582	1580	55	5	371	5	TRIM10	6	30122026	Missense_Mutation	SNP	T	TCGA-A7-A13H-01A-11D-A228-09		30122026	140993041	7	7678										
PPP1R9A	0	genome.wustl.edu	37	chr7	94740610	94740610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	atgaagactatgacaggagaAatgacgaagttgaccctgtg	12	6	0	6			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	7	94740610	94740610	A	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	missense	c.1435	p.N479D	1.000	superfamily_PDZ	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	90	0	0	52	14	21.21	-	-	-	G	94740610	A	G	94740610	3	3	128	1	0	0	0	0	1	0	0	0	12455	14	1	5	1441	5	PPP1R9A	7	94740610	Missense_Mutation	SNP	A	TCGA-A7-A13H-01A-11D-A228-09		94740610	64398053	8	7679										
SMC5	0	genome.wustl.edu	37	chr9	72930414	72930414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	tatttgatgcacctgatcctGtaatgagttacctttgctgt	8	8	0	3			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	9	72930414	72930414	G	T	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	missense	c.1726	p.V576L	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	64	0	0	34	4	10.53	-	-	-	T	72930414	G	T	72930414	3	4	128	1	0	0	0	0	1	0	0	0	14875	1377	48	4	1776	4	SMC5	9	72930414	Missense_Mutation	SNP	G	TCGA-A7-A13H-01A-11D-A228-09		72930414	68283017	9	7680										
PKN3	0	genome.wustl.edu	37	chr9	131467742	131467742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	gctgctgcggtcctccaaccGccgcctggagcagctgcatg	13	16	0	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	9	131467742	131467742	G	A	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	missense	c.185	p.R62H	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	56	0	0	35	8	18.6	-	-	-	A	131467742	G	A	131467742	3	1	128	1	0	0	0	0	1	0	0	0	12055	1087	38	1	191	1	PKN3	9	131467742	Missense_Mutation	SNP	G	TCGA-A7-A13H-01A-11D-A228-09	58537328	131467742	9745689	10	7681										
SEC16A	0	genome.wustl.edu	37	chr9	139370344	139370344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	ggctcacagtggtctcgtctGtttcacctcctacgggagaa	11	12	4	1			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	9	139370344	139370344	G	T	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.1724	p.T575K	0.004	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	53	0	0	29	4	12.12	-	-	-	T	139370344	G	T	139370344	3	4	128	1	0	0	0	0	1	0	0	0	14074	1377	48	4	5469	4	SEC16A	9	139370344	Missense_Mutation	SNP	G	TCGA-A7-A13H-01A-11D-A228-09	7902602	139370344	1843087	11	7682										
DCHS1	0	genome.wustl.edu	37	chr11	6646586	6646586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	ggggccccgtgagggagacaCggcctccatagcggccaaca	15	14	0	2			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	11	6646586	6646586	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.6989	p.R2330H	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	27	0	0	13	5	27.78	-	-	-	T	6646586	C	T	6646586	3	4	128	1	0	0	0	0	1	0	0	0	4318	536	19	1	2919	1	DCHS1	11	6646586	Missense_Mutation	SNP	C	TCGA-A7-A13H-01A-11D-A228-09		6646586	128359930	12	7683										
FANCM	0	genome.wustl.edu	37	chr14	45650865	45650865	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	gaaaaatagtgaagttgattCtccacttcatgctgtcaaaa	7	7	3	2			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	14	45650865	45650865	C	T	SNP	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	missense	c.4343	p.S1448F	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	49	0	0	29	4	12.12	-	-	-	T	45650865	C	T	45650865	3	4	128	1	0	0	0	0	1	0	0	0	5717	913	32	2	4405	2	FANCM	14	45650865	Missense_Mutation	SNP	C	TCGA-A7-A13H-01A-11D-A228-09		45650865	61698675	13	7684										
TMEM63C	0	genome.wustl.edu	37	chr14	77714719	77714719	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cctgccagacaacggcgcctTctttgtcaactacgtgatca	8	14	3	2			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	14	77714719	77714719	T	G	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	missense	c.1631	p.F544C	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	56	0	0	19	8	29.63	-	-	-	G	77714719	T	G	77714719	3	3	128	1	0	0	0	0	1	0	0	0	16287	1783	62	5	1697	5	TMEM63C	14	77714719	Missense_Mutation	SNP	T	TCGA-A7-A13H-01A-11D-A228-09	32063854	77714719	29634821	14	7685										
FBLN5	0	genome.wustl.edu	37	chr14	92349417	92349417	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cagagaagctgcactcgtccAtatctggggtgacaagtcac	11	11	2	2			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	14	92349417	92349417	A	G	SNP	FBLN5	ENST00000342058	human	ensembl	69_37n	-1	known	missense	c.743	p.M248T	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,superfamily_TIL_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	FBLN5	HGNC	ENSG00000140092	47	0	0	24	4	14.29	-	-	-	G	92349417	A	G	92349417	3	3	128	1	0	0	0	0	1	0	0	0	5746	217	8	5	619	5	FBLN5	14	92349417	Missense_Mutation	SNP	A	TCGA-A7-A13H-01A-11D-A228-09	14634698	92349417	15000123	15	7686										
YY1	0	genome.wustl.edu	37	chr14	100741061	100741061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	gccaagaaaaattaaagaagAtgatgctccaagaacaatag	8	6	0	5			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	14	100741061	100741061	A	G	SNP	YY1	ENST00000262238	human	ensembl	69_37n	1	known	missense	c.869	p.D290G	1.000	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811	24	0	0	15	6	28.57	-	-	-	G	100741061	A	G	100741061	3	3	128	1	0	0	0	0	1	0	0	0	17604	333	12	5	879	5	YY1	14	100741061	Missense_Mutation	SNP	A	TCGA-A7-A13H-01A-11D-A228-09	8391644	100741061	6608479	16	7687										
SNRNP25	0	genome.wustl.edu	37	chr16	103923	103923	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	gccctggaggagacggaggcCgcgggtgggcccgaggcgca	21	12	0	1			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	16	103923	103923	C	G	SNP	SNRNP25	ENST00000493672	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNRNP25	HGNC	ENSG00000161981	18	0	0	16	4	20	-	-	-	G	103923	C	G	103923	1	3	128	0	1	0	0	0	0	0	0	0	14942	667	23	3		3	SNRNP25	16	103923	RNA	SNP	C	TCGA-A7-A13H-01A-11D-A228-09		103923	90250830	17	7688										
CDH1	0	genome.wustl.edu	37	chr16	68835697	68835697	+	Frame_Shift_Del	DEL	C	C	-													0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cggtttcataacccacagatCcatttcttggtctacgcctg							TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	16	68835697	68835697	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.288	p.H97fs	0.040	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	41	0	0	20	11	34.38	-	-	-	-	68835697	C	-	68835697	7	5	128	1	0	1	0	1	0	0	0	0	3124	845	30	0	298	0	CDH1	16	68835697	Frame_Shift_Del	DEL	C	TCGA-A7-A13H-01A-11D-A228-09	68731774	68835697	21519056	18	7689										
TBX21	0	genome.wustl.edu	37	chr17	45822177	45822177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cccaactgtcaattccttggGggagatcactactctcctct	7	14	4	1			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	17	45822177	45822177	G	A	SNP	TBX21	ENST00000177694	human	ensembl	69_37n	1	known	silent	c.1053	p.G351	0.981	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861	112	0	0	67	13	16.25	-	-	-	A	45822177	G	A	45822177	2	1	128	1	0	0	0	0	0	0	0	1	15752	1219	43	4		4	TBX21	17	45822177	Silent	SNP	G	TCGA-A7-A13H-01A-11D-A228-09		45822177	35373033	19	7690										
KDM4B	0	genome.wustl.edu	37	chr19	5135512	5135512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	tgcctgccaactcctacatcGgcgacgacgggaccagcccc	10	18	0	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	19	5135512	5135512	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	missense	c.2248	p.G750S	0.641	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	90	0	0	55	11	16.67	-	-	-	A	5135512	G	A	5135512	3	1	128	1	0	0	0	0	1	0	0	0	8183	1116	39	1	2298	1	KDM4B	19	5135512	Missense_Mutation	SNP	G	TCGA-A7-A13H-01A-11D-A228-09		5135512	53993471	20	7691										
CYP2A13	0	genome.wustl.edu	37	chr19	41596102	41596102	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	cgccctccggggcacgcacgGtgagtaggggaccccgagtg	17	14	0	1			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	19	41596102	41596102	G	T	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	splice_site	c.493+1	e3+1	0.996	-	-	-	no_errors	CYP2A13	HGNC	ENSG00000197838	87	0	0	65	11	14.47	-	-	-	T	41596102	G	T	41596102	5	4	128	1	0	0	0	0	0	0	1	0	4192	1275	44	4	504	4	CYP2A13	19	41596102	Splice_Site	SNP	G	TCGA-A7-A13H-01A-11D-A228-09	36460590	41596102	17532881	21	7692										
TBX22	0	genome.wustl.edu	37	chrX	79279632	79279632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0476190476190476	1	0.871886716160037	1.30718954248366	0	1.56862745098039	1	1	0	agcagtaccatgtggccatcGatgtggtgccggtggattcc	14	10	0	0			TCGA-A7-A13H-01A-11D-A228-09	TCGA-A7-A13H-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627a43c-a8fc-4f43-8774-746689bf1246	6f9cf2eb-b5fd-4530-a92f-6460811f111f	X	79279632	79279632	G	T	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.427	p.D143Y	0.994	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	104	0	0	46	10	17.86	-	-	-	T	79279632	G	T	79279632	3	4	128	1	0	0	0	0	1	0	0	0	15753	1058	37	3	437	3	TBX22	23	79279632	Missense_Mutation	SNP	G	TCGA-A7-A13H-01A-11D-A228-09		79279632	75990928	22	7693										
FLG	0	genome.wustl.edu	37	chr1	152282658	152282658	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tgtgagtgtctagagctgccGgcccgagtggaaggttcatg	16	8	2	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	1	152282658	152282658	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.4704	p.A1568	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	199	0	0	108	87	44.62	-	-	-	A	152282658	G	A	152282658	2	1	129	1	0	0	0	0	0	0	0	1	5968	1103	39	1		1	FLG	1	152282658	Silent	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		152282658	96967963	1	7694										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tgctgctgctgctgctgctgAagctgcggaggctgaggctg	17	10	0	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	18	0	0	24	14	36.84	-	-	-	C	154842243	A	C	154842243	2	2	129	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-A7-A26E-01A-11D-A167-09	2559585	154842243	94408378	2	7695										
PCGF1	0	genome.wustl.edu	37	chr2	74734188	74734188	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	caagtatgaagacactctgtGatggtggtggcatccacgaa	12	8	1	3			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	74734188	74734188	G	A	SNP	PCGF1	ENST00000233630	human	ensembl	69_37n	-1	known	silent	c.180	p.I60	0.996	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF1	HGNC	ENSG00000115289	63	0	0	41	25	37.88	-	-	-	A	74734188	G	A	74734188	2	1	129	1	0	0	0	0	0	0	0	1	11647	1280	45	2		2	PCGF1	2	74734188	Silent	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		74734188	168465185	3	7696										
HK2	0	genome.wustl.edu	37	chr2	75117929	75117929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tcccaccttttccagctttgCcaaagtcatgcatgagacag	7	13	1	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	75117929	75117929	C	T	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	missense	c.2615	p.A872V	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	87	0	0	49	22	30.99	-	-	-	T	75117929	C	T	75117929	3	4	129	1	0	0	0	0	1	0	0	0	7242	739	26	4	2685	4	HK2	2	75117929	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	383741	75117929	168081444	4	7697										
LRP1B	0	genome.wustl.edu	37	chr2	141283540	141283540	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gttttcactccaagcttataGaaatgtgtgcagtctgtgtt	9	7	2	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	141283540	141283540	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.7899	p.F2633	1.000	superfamily_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	77	0	0	38	22	36.67	-	-	-	A	141283540	G	A	141283540	2	1	129	1	0	0	0	0	0	0	0	1	9021	933	33	2		2	LRP1B	2	141283540	Silent	SNP	G	TCGA-A7-A26E-01A-11D-A167-09	66165611	141283540	101915833	5	7698										
NFE2L2	0	genome.wustl.edu	37	chr2	178098803	178098803	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gctgaattgggagaaattcaCctgtctcttcatctagttgt	9	8	4	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	178098803	178098803	C	T	SNP	NFE2L2	ENST00000449627	human	ensembl	69_37n	-1	novel	splice_site	c.193+1	e1+1	1.000	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	NFE2L2	HGNC	ENSG00000116044	154	0	0	91	41	31.06	-	-	-	T	178098803	C	T	178098803	5	4	129	1	0	0	0	0	0	0	1	0	10440	507	18	4	1591	4	NFE2L2	2	178098803	Splice_Site	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	36815263	178098803	65100570	6	7699										
PRKAG3	0	genome.wustl.edu	37	chr2	219692583	219692583	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ggtctcaatcttatgttgttCaatctcatagatctggacct	7	9	5	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	219692583	219692583	C	T	SNP	PRKAG3	ENST00000233944	human	ensembl	69_37n	-1	known	missense	c.793	p.E265K	1.000	NULL	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG3	HGNC	ENSG00000115592	102	0	0	42	17	28.81	-	-	-	T	219692583	C	T	219692583	3	4	129	1	0	0	0	0	1	0	0	0	12583	835	29	2	704	2	PRKAG3	2	219692583	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	41593780	219692583	23506790	7	7700										
FAM134A	0	genome.wustl.edu	37	chr2	220045923	220045923	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgcatcacaaacacgacaaGaggagtaaggggctgcccta	11	11	1	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	220045923	220045923	G	A	SNP	FAM134A	ENST00000430297	human	ensembl	69_37n	1	known	silent	c.780	p.K260	1.000	NULL	pfam_Reticulon	-	no_errors	FAM134A	HGNC	ENSG00000144567	52	0	0	26	19	42.22	-	-	-	A	220045923	G	A	220045923	2	1	129	1	0	0	0	0	0	0	0	1	5485	933	33	2		2	FAM134A	2	220045923	Silent	SNP	G	TCGA-A7-A26E-01A-11D-A167-09	353340	220045923	23153450	8	7701										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	89	0	0	54	28	34.15	-	-	-	A	178936091	G	A	178936091	3	1	129	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		178936091	19086339	9	7702										
SLC10A4	0	genome.wustl.edu	37	chr4	48486056	48486056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tggccttcctgctggccctcGccttcaagctggacgaggtg	13	14	1	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	4	48486056	48486056	G	A	SNP	SLC10A4	ENST00000273861	human	ensembl	69_37n	1	known	missense	c.478	p.A160T	0.000	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248	13	0	0	2	5	71.43	-	-	-	A	48486056	G	A	48486056	3	1	129	1	0	0	0	0	1	0	0	0	14465	1087	38	1	480	1	SLC10A4	4	48486056	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		48486056	142668220	10	7703										
CWC27	0	genome.wustl.edu	37	chr5	64267547	64267547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tagaggaagaagcccctccaGatggtgctgttgccgaatac	12	10	0	3			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	5	64267547	64267547	G	A	SNP	CWC27	ENST00000381070	human	ensembl	69_37n	1	known	missense	c.1060	p.D354N	0.998	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	43	0	0	25	15	37.5	-	-	-	A	64267547	G	A	64267547	3	1	129	1	0	0	0	0	1	0	0	0	4101	942	33	2	1106	2	CWC27	5	64267547	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		64267547	116647713	11	7704										
SLC4A2	0	genome.wustl.edu	37	chr7	150773425	150773425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	atgagcgggagggtgtggacGagtacaatgagatgcccatg	17	6	0	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	7	150773425	150773425	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.3697	p.E1233K	0.999	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	36	0	0	13	6	31.58	-	-	-	A	150773425	G	A	150773425	3	1	129	1	0	0	0	0	1	0	0	0	14743	1059	37	1	3783	1	SLC4A2	7	150773425	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		150773425	8365238	12	7705										
QSOX2	0	genome.wustl.edu	37	chr9	139101011	139101011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgcttcaagaatgtgagcaCgtggccttcatcccagctgg	11	12	2	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	9	139101011	139101011	C	T	SNP	QSOX2	ENST00000358701	human	ensembl	69_37n	-1	known	missense	c.1660	p.V554M	1.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661	30	0	0	24	16	40	-	-	-	T	139101011	C	T	139101011	3	4	129	1	0	0	0	0	1	0	0	0	12967	536	19	1	440	1	QSOX2	9	139101011	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09		139101011	2112420	13	7706										
HECTD2	0	genome.wustl.edu	37	chr10	93256090	93256090	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	caaaatataccagtaggcatCtgcaatgttaccgtggacga	9	9	1	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	10	93256090	93256090	C	T	SNP	HECTD2	ENST00000446394	human	ensembl	69_37n	1	known	silent	c.1653	p.I551	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	78	0	0	53	11	17.19	-	-	-	T	93256090	C	T	93256090	2	4	129	1	0	0	0	0	0	0	0	1	7091	903	32	2		2	HECTD2	10	93256090	Silent	SNP	C	TCGA-A7-A26E-01A-11D-A167-09		93256090	42278657	14	7707										
CEP55	0	genome.wustl.edu	37	chr10	95279501	95279501	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	cgtcaacatgtgcagcatcaAttgcatgtaattcttaagga	8	8	3	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	10	95279501	95279501	A	G	SNP	CEP55	ENST00000371485	human	ensembl	69_37n	1	known	silent	c.1128	p.Q376	0.945	NULL	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180	61	0	0	37	11	22.92	-	-	-	G	95279501	A	G	95279501	2	3	129	1	0	0	0	0	0	0	0	1	3284	98	4	5		5	CEP55	10	95279501	Silent	SNP	A	TCGA-A7-A26E-01A-11D-A167-09	2023411	95279501	40255246	15	7708										
TEAD1	0	genome.wustl.edu	37	chr11	12902571	12902571	+	Frame_Shift_Del	DEL	A	A	-													0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gttctggccgggaatgattcAaacagggcagccaggatcct							TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	11	12902571	12902571	A	-	DEL	TEAD1	ENST00000361905	human	ensembl	69_37n	1	known	frame_shift_del	c.440	p.T148fs	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD1	HGNC	ENSG00000187079	80	0	0	21	23	52.27	-	-	-	-	12902571	A	-	12902571	7	5	129	1	0	1	0	1	0	0	0	0	15833	130	5	0	503	0	TEAD1	11	12902571	Frame_Shift_Del	DEL	A	TCGA-A7-A26E-01A-11D-A167-09		12902571	122103945	16	7709										
E2F8	0	genome.wustl.edu	37	chr11	19256462	19256462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgctcggcgtacttattctCctccccgatgctcttcaagg	8	15	3	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	11	19256462	19256462	C	T	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	missense	c.595	p.E199K	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	89	0	0	23	27	54	-	-	-	T	19256462	C	T	19256462	3	4	129	1	0	0	0	0	1	0	0	0	4908	864	30	2	2044	2	E2F8	11	19256462	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	6353891	19256462	115750054	17	7710										
TPH2	0	genome.wustl.edu	37	chr12	72338138	72338138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gcgaagaagttctgaggttgAaatctttgtggactgtgagt	14	4	2	4			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	72338138	72338138	A	G	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	missense	c.320	p.E107G	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	126	0	0	59	36	37.5	-	-	-	G	72338138	A	G	72338138	3	3	129	1	0	0	0	0	1	0	0	0	16498	246	9	5	330	5	TPH2	12	72338138	Missense_Mutation	SNP	A	TCGA-A7-A26E-01A-11D-A167-09		72338138	61513757	18	7711										
BRAP	0	genome.wustl.edu	37	chr12	112121094	112121094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tgtcgtcttttttatctcctCatcagacatttccccggcta	5	13	4	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	112121094	112121094	C	T	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.100	p.E34K	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	86	0	0	59	22	27.16	-	-	-	T	112121094	C	T	112121094	3	4	129	1	0	0	0	0	1	0	0	0	1505	835	29	2	1722	2	BRAP	12	112121094	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	39782956	112121094	21730801	19	7712										
KDM2B	0	genome.wustl.edu	37	chr12	121878877	121878877	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctggcccagggctcaccaggCagccggttgatgagccagct	14	14	1	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	121878877	121878877	C	A	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	silent	c.3444	p.L1148	0.991	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	46	0	0	14	15	51.72	-	-	-	A	121878877	C	A	121878877	2	1	129	1	0	0	0	0	0	0	0	1	8179	697	25	4		4	KDM2B	12	121878877	Silent	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	9757783	121878877	11973018	20	7713										
FAM179B	0	genome.wustl.edu	37	chr14	45513889	45513889	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgctgtggtctgtttaagtGatcttttcacttatttgaaa	8	6	3	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	14	45513889	45513889	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.3970	p.D1324N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	115	0	0	62	19	23.46	-	-	-	A	45513889	G	A	45513889	3	1	129	1	0	0	0	0	1	0	0	0	5546	1290	45	2	4020	2	FAM179B	14	45513889	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		45513889	61835651	21	7714										
CASC5	0	genome.wustl.edu	37	chr15	40913336	40913336	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	agtgtcatacagccaatattCagacattgattcccacatcc	5	12	2	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	15	40913336	40913336	C	T	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	nonsense	c.952	p.Q318*	1.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	52	0	0	15	18	54.55	-	-	-	T	40913336	C	T	40913336	4	4	129	1	0	0	0	0	0	1	0	0	2688	827	29	2	990	2	CASC5	15	40913336	Nonsense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09		40913336	61618056	22	7715										
TCF12	0	genome.wustl.edu	37	chr15	57213290	57213290	+	Frame_Shift_Del	DEL	G	G	-													0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tgggaagcagtcaattcagtGgatcaggtaagatgatgtct							TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	15	57213290	57213290	G	-	DEL	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	frame_shift_del	c.142	p.G48fs	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	54	0	0	37	6	13.64	-	-	-	-	57213290	G	-	57213290	7	5	129	1	0	1	0	1	0	0	0	0	15782	1349	47	0	148	0	TCF12	15	57213290	Frame_Shift_Del	DEL	G	TCGA-A7-A26E-01A-11D-A167-09	16299954	57213290	45318102	23	7716										
CSPG4	0	genome.wustl.edu	37	chr15	75967903	75967903	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gccaggcctcacacccagtaCtggccattcttaagggcagg	11	14	2	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	15	75967903	75967903	C	G	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.6957	p.Q2319H	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	10	0	0	13	9	40.91	-	-	-	G	75967903	C	G	75967903	3	3	129	1	0	0	0	0	1	0	0	0	3992	564	20	4	15	4	CSPG4	15	75967903	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	18754613	75967903	26563489	24	7717										
MYO15A	0	genome.wustl.edu	37	chr17	18058670	18058670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	agctcctagctgtgtcccacGtgggcatcaaactcctgagg	11	13	1	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	18058670	18058670	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.8383	p.V2795M	0.082	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	19	0	0	19	6	24	-	-	-	A	18058670	G	A	18058670	3	1	129	1	0	0	0	0	1	0	0	0	10135	1145	40	1	8561	1	MYO15A	17	18058670	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		18058670	63136540	25	7718										
ABCA8	0	genome.wustl.edu	37	chr17	66871785	66871785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	cagataccatgatggccactCggtcacacacggcctcagcc	9	16	2	2			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	66871785	66871785	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.4460	p.R1487Q	0.997	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	61	0	0	41	5	10.87	-	-	-	T	66871785	C	T	66871785	3	4	129	1	0	0	0	0	1	0	0	0	38	884	31	1	425	1	ABCA8	17	66871785	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	48813115	66871785	14323425	26	7719										
SDK2	0	genome.wustl.edu	37	chr17	71375348	71375348	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gatgtctccattctggctgtCcagcggaggtggctcccaag	13	12	2	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	71375348	71375348	C	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.4948	p.D1650Y	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	51	0	0	19	17	47.22	-	-	-	A	71375348	C	A	71375348	3	1	129	1	0	0	0	0	1	0	0	0	14057	855	30	2	1610	2	SDK2	17	71375348	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	4503563	71375348	9819862	27	7720										
SPHK1	0	genome.wustl.edu	37	chr17	74383309	74383309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	agtcctggcactgctgcactCgcacctgggcagtgagatgt	13	12	0	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	74383309	74383309	C	T	SNP	SPHK1	ENST00000323374	human	ensembl	69_37n	1	known	missense	c.1055	p.S352L	0.999	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK1	HGNC	ENSG00000176170	32	0	0	24	7	22.58	-	-	-	T	74383309	C	T	74383309	3	4	129	1	0	0	0	0	1	0	0	0	15137	893	31	1	1119	1	SPHK1	17	74383309	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	3007961	74383309	6811901	28	7721										
ARHGAP28	0	genome.wustl.edu	37	chr18	6890051	6890051	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	actgcggcccacatcatccgCctaatgcttaagtaccagaa	7	14	1	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	18	6890051	6890051	C	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	silent	c.1701	p.R567	0.993	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	78	0	0	50	11	18.03	-	-	-	A	6890051	C	A	6890051	2	1	129	1	0	0	0	0	0	0	0	1	879	726	26	4		4	ARHGAP28	18	6890051	Silent	SNP	C	TCGA-A7-A26E-01A-11D-A167-09		6890051	71187197	29	7722										
FHOD3	0	genome.wustl.edu	37	chr18	34359414	34359414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgcaccaccactgcagtgcGaagaaccctgaagagcggcc	11	15	0	3			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	18	34359414	34359414	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.4241	p.R1414Q	1.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	37	0	0	24	17	41.46	-	-	-	A	34359414	G	A	34359414	3	1	129	1	0	0	0	0	1	0	0	0	5929	1058	37	1	4339	1	FHOD3	18	34359414	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09	27469363	34359414	43717834	30	7723										
PLVAP	0	genome.wustl.edu	37	chr19	17476399	17476399	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	gggccacgcgttcgatatccGcccggaggctccgggccagc	15	16	0	0			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	19	17476399	17476399	G	T	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	missense	c.875	p.A292E	0.000	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300	23	0	0	23	6	20.69	-	-	-	T	17476399	G	T	17476399	3	4	129	1	0	0	0	0	1	0	0	0	12190	1087	38	3	469	3	PLVAP	19	17476399	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		17476399	41652584	31	7724										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	C													0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	21	36252994	36252995	-	C	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	95	0	0	34	12	26.09	-	-	-	C	36252995	-	C	36252994	7	5	129	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-A7-A26E-01A-11D-A167-09		36252994	11876901	32	7725										
UMODL1	0	genome.wustl.edu	37	chr21	43496126	43496126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	tctttcagaaaaaggcctctCcctgttgggctaccagctat	8	12	3	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	21	43496126	43496126	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.89	p.S30F	0.999	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	24	0	0	12	8	40	-	-	-	T	43496126	C	T	43496126	3	4	129	1	0	0	0	0	1	0	0	0	17077	855	30	2	95	2	UMODL1	21	43496126	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	7243132	43496126	4633769	33	7726										
SFI1	0	genome.wustl.edu	37	chr22	32003986	32003986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	accgacagcaggaggactgtGccatctgggaggcccagaag	15	11	1	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	22	32003986	32003986	G	T	SNP	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	missense	c.2221	p.A741S	0.002	superfamily_Cyclin-like	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	32	0	0	7	13	65	-	-	-	T	32003986	G	T	32003986	3	4	129	1	0	0	0	0	1	0	0	0	14244	1319	46	4	2303	4	SFI1	22	32003986	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09		32003986	19300580	34	7727										
TOM1	0	genome.wustl.edu	37	chr22	35713945	35713945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgcgacatcatcaacgagaCggaggaagggtaagggcccc	14	11	2	1			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	22	35713945	35713945	C	T	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	1	known	missense	c.128	p.T43M	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	32	0	0	9	10	52.63	-	-	-	T	35713945	C	T	35713945	3	4	129	1	0	0	0	0	1	0	0	0	16446	536	19	1	134	1	TOM1	22	35713945	Missense_Mutation	SNP	C	TCGA-A7-A26E-01A-11D-A167-09	3709959	35713945	15590621	35	7728										
KDM5C	0	genome.wustl.edu	37	chrX	53224485	53224486	+	In_Frame_Ins	INS	-	-	GGT													0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ccctccaggagtgcgctgtcINSagtacctgtagctctagctg							TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	53224485	53224486	-	GGT	INS	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	in_frame_ins	c.3228_3227	p.1077in_frame_insP	1.000:1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	67	0	0	47	8	14.55	-	-	-	GGT	53224486	-	GGT	53224485	7	5	129	1	0	1	1	0	0	0	0	0	8188	813	29	0	1576	0	KDM5C	23	53224485	In_Frame_Ins	INS	-	TCGA-A7-A26E-01A-11D-A167-09		53224485	102046075	36	7729										
HMGB3	0	genome.wustl.edu	37	chrX	150155775	150155775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.27027027027027	10	0.00889348196223445	2.85714285714286	0	2.98136645962733	1.0825088224469e-05	0.000588163126862816	7	ctgaaggagaagtatgagaaGgtaaggtggggctggaagcc	18	4	0	3			TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	150155775	150155775	G	T	SNP	HMGB3	ENST00000325307	human	ensembl	69_37n	1	known	missense	c.465	p.K155N	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB3	HGNC	ENSG00000029993	57	0	0	31	16	34.04	-	-	-	T	150155775	G	T	150155775	3	4	129	1	0	0	0	0	1	0	0	0	7278	1014	35	4	475	4	HMGB3	23	150155775	Missense_Mutation	SNP	G	TCGA-A7-A26E-01A-11D-A167-09	96931290	150155775	5114785	37	7730										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939659	12939659	+	Frame_Shift_Del	DEL	C	C	-													0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cagaagctgaaggtgttgagCtcaaagcagcggctcagggc							TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	12939659	12939659	C	-	DEL	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	frame_shift_del	c.1143	p.E381fs	0.021	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	72	0	0	76	40	33.06	-	-	-	-	12939659	C	-	12939659	7	5	130	1	0	1	0	1	0	0	0	0	12517	796	28	0	297	0	PRAMEF4	1	12939659	Frame_Shift_Del	DEL	C	TCGA-A7-A26F-01A-21D-A167-09		12939659	236310962	1	7731										
ABCA4	0	genome.wustl.edu	37	chr1	94522223	94522223	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cacaggatgtgtggcaggtaGagggtgaaatagatgacacc	15	6	0	4			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	94522223	94522223	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.2316	p.L772	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	32	0	0	40	11	21.57	-	-	-	A	94522223	G	A	94522223	2	1	130	1	0	0	0	0	0	0	0	1	34	929	33	2		2	ABCA4	1	94522223	Silent	SNP	G	TCGA-A7-A26F-01A-21D-A167-09	81582564	94522223	154728398	2	7732										
ASH1L	0	genome.wustl.edu	37	chr1	155448988	155448988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	agaaacatgctcaaaagaatGcctcctctttttttgcccac	5	12	2	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	155448988	155448988	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.3673	p.H1225Y	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	60	0	0	73	32	30.48	-	-	-	A	155448988	G	A	155448988	3	1	130	1	0	0	0	0	1	0	0	0	1045	1319	46	4	5325	4	ASH1L	1	155448988	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09	60926765	155448988	93801633	3	7733										
CACYBP	0	genome.wustl.edu	37	chr1	174977786	174977786	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	atattgtgtagaaagaaagtGgaaaacacaaggtgggatta	12	2	0	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	174977786	174977786	G	A	SNP	CACYBP	ENST00000367679	human	ensembl	69_37n	1	known	silent	c.474	p.V158	0.001	superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_SGS	pfam_Siah-Interact_N,pfam_CS_domain,pfam_SGS,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_SGS	-	no_errors	CACYBP	HGNC	ENSG00000116161	54	0	0	59	37	38.54	-	-	-	A	174977786	G	A	174977786	2	1	130	1	0	0	0	0	0	0	0	1	2589	1335	47	4		4	CACYBP	1	174977786	Silent	SNP	G	TCGA-A7-A26F-01A-21D-A167-09	19528798	174977786	74272835	4	7734										
ATP6V1G3	0	genome.wustl.edu	37	chr1	198498240	198498240	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	ttttagtcgaaactctttatCtctctgcattctgtactggt	6	9	4	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	198498240	198498240	C	A	SNP	ATP6V1G3	ENST00000367381	human	ensembl	69_37n	-1	known	missense	c.172	p.D58Y	0.997	pfam_V-ATPase_G,tigrfam_V-ATPase_G	pfam_V-ATPase_G,tigrfam_V-ATPase_G	-	no_errors	ATP6V1G3	HGNC	ENSG00000151418	67	0	0	77	35	31.25	-	-	-	A	198498240	C	A	198498240	3	1	130	1	0	0	0	0	1	0	0	0	1192	913	32	2	210	2	ATP6V1G3	1	198498240	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	23520454	198498240	50752381	5	7735										
EPB41L5	0	genome.wustl.edu	37	chr2	120831738	120831738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cctcagaaccaaataaccttCgtgaggagctaacccggtaa	8	12	1	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	120831738	120831738	C	T	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	missense	c.391	p.R131C	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	49	0	0	101	24	19.2	-	-	-	T	120831738	C	T	120831738	3	4	130	1	0	0	0	0	1	0	0	0	5194	884	31	1	405	1	EPB41L5	2	120831738	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09		120831738	122367635	6	7736										
CHN1	0	genome.wustl.edu	37	chr2	175742762	175742762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	atagagagtaatcaagccatCagtcaccagatcgtggatgg	11	8	3	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	175742762	175742762	C	T	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	missense	c.355	p.D119N	1.000	smart_SH2,pirsf_N-chimaerin	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	71	0	0	98	31	24.03	-	-	-	T	175742762	C	T	175742762	3	4	130	1	0	0	0	0	1	0	0	0	3391	826	29	2	1056	2	CHN1	2	175742762	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	54911024	175742762	67456611	7	7737										
AQP12A	0	genome.wustl.edu	37	chr2	241631392	241631392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cttcgccctctgtgaggcggCcaggcgggcctccaaggccc	14	17	1	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	241631392	241631392	C	T	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.62	p.A21V	0.812	pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	41	0	0	25	20	44.44	-	-	-	T	241631392	C	T	241631392	3	4	130	1	0	0	0	0	1	0	0	0	826	739	26	4	64	4	AQP12A	2	241631392	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	65888630	241631392	1567981	8	7738										
RFC1	0	genome.wustl.edu	37	chr4	39347084	39347084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	tttgaagtcatcctctttacGggagctatttacctataaac	6	9	2	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	4	39347084	39347084	G	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.145	p.R49C	0.753	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	71	0	0	120	30	20	-	-	-	A	39347084	G	A	39347084	3	1	130	1	0	0	0	0	1	0	0	0	13327	1116	39	1	3390	1	RFC1	4	39347084	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		39347084	151807192	9	7739										
CEP120	0	genome.wustl.edu	37	chr5	122713082	122713082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	tccaacctgttgctgaaggcGgtgtttatcctcttcgagct	10	11	1	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	5	122713082	122713082	G	A	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.2344	p.R782C	0.722	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	69	0	0	106	27	20.3	-	-	-	A	122713082	G	A	122713082	3	1	130	1	0	0	0	0	1	0	0	0	3275	1116	39	1	636	1	CEP120	5	122713082	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		122713082	58202178	10	7740										
LARS	0	genome.wustl.edu	37	chr5	145531429	145531429	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	aaaaattattacttacacccTcataaaatccttttagatat	1	8	1	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	5	145531429	145531429	T	A	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	missense	c.1421	p.E474V	1.000	pfam_aa-tRNA-synth_Ia,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	68	0	0	111	43	27.92	-	-	-	A	145531429	T	A	145531429	3	1	130	1	0	0	0	0	1	0	0	0	8688	1551	54	5	2185	5	LARS	5	145531429	Missense_Mutation	SNP	T	TCGA-A7-A26F-01A-21D-A167-09	22818347	145531429	35383831	11	7741										
HS3ST5	0	genome.wustl.edu	37	chr6	114378876	114378876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cctctccttcccctctagcaCctgagtataatcagaaatag	5	14	3	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	6	114378876	114378876	C	T	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	missense	c.586	p.V196M	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	72	0	0	110	29	20.86	-	-	-	T	114378876	C	T	114378876	3	4	130	1	0	0	0	0	1	0	0	0	7419	507	18	4	458	4	HS3ST5	6	114378876	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09		114378876	56736191	12	7742										
GPR22	0	genome.wustl.edu	37	chr7	107115253	107115253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	gcacaagattttcaacagggCagaagaagaaagcaagaaag	11	6	1	5			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	7	107115253	107115253	C	A	SNP	GPR22	ENST00000304402	human	ensembl	69_37n	1	known	missense	c.748	p.Q250K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR22	HGNC	ENSG00000172209	43	0	0	84	56	40	-	-	-	A	107115253	C	A	107115253	3	1	130	1	0	0	0	0	1	0	0	0	6732	711	25	4	750	4	GPR22	7	107115253	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09		107115253	52023410	13	7743										
PIP	0	genome.wustl.edu	37	chr7	142829239	142829239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	ctccagctcctgttcagggcCagccctgccaccctgctcct	8	20	1	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	7	142829239	142829239	C	T	SNP	PIP	ENST00000291009	human	ensembl	69_37n	1	known	silent	c.30	p.A10	0.000	pfam_SV_autoAg,pirsf_SV_autoAg	pfam_SV_autoAg,pirsf_SV_autoAg	-	no_errors	PIP	HGNC	ENSG00000159763	19	0	0	30	15	33.33	-	-	-	T	142829239	C	T	142829239	2	4	130	1	0	0	0	0	0	0	0	1	12009	581	21	4		4	PIP	7	142829239	Silent	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	35713986	142829239	16309424	14	7744										
COL14A1	0	genome.wustl.edu	37	chr8	121237326	121237326	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	tatgacttatttctttgacaGgttgaagtcgatcctattac	7	7	1	3			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	8	121237326	121237326	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	splice_site	c.1738-1	e14-1	1.000	-	-	-	no_errors	COL14A1	HGNC	ENSG00000187955	50	0	0	93	19	16.96	-	-	-	A	121237326	G	A	121237326	5	1	130	1	0	0	0	0	0	0	1	0	3701	1014	35	4	1791	4	COL14A1	8	121237326	Splice_Site	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		121237326	25126696	15	7745										
GPRIN2	0	genome.wustl.edu	37	chr10	46999608	46999608	+	Frame_Shift_Del	DEL	C	C	-													0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	tggcatgagggaggtgagggCtggtggctgctgccatgccc							TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	10	46999608	46999608	C	-	DEL	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	frame_shift_del	c.728	p.A243fs	0.001	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	24	0	0	38	7	14	-	-	-	-	46999608	C	-	46999608	7	5	130	1	0	1	0	1	0	0	0	0	6781	797	28	0	730	0	GPRIN2	10	46999608	Frame_Shift_Del	DEL	C	TCGA-A7-A26F-01A-21D-A167-09		46999608	88535139	16	7746										
PTEN	0	genome.wustl.edu	37	chr10	89690810	89690811	+	Frame_Shift_Del	DEL	GA	GA	-													0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	acttttcttttagttgtgctGaaagacattatgacaccgcc							TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	10	89690810	89690811	GA	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.217_218	p.E73fs	1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	42	0	0	46	31	38.75	-	-	-	-	89690811	GA	-	89690810	7	5	130	1	0	1	0	1	0	0	0	0	12818	1291	45	0	231	0	PTEN	10	89690810	Frame_Shift_Del	DEL	GA	TCGA-A7-A26F-01A-21D-A167-09	42691202	89690810	45843937	17	7747										
ACTN3	0	genome.wustl.edu	37	chr11	66319055	66319055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	gcttccacaaaatcgccaacGttaacaaggccctggacttc	7	14	0	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	11	66319055	66319055	G	A	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	missense	c.448	p.V150I	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	43	0	0	65	20	23.53	-	-	-	A	66319055	G	A	66319055	3	1	130	1	0	0	0	0	1	0	0	0	206	1145	40	1	329	1	ACTN3	11	66319055	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		66319055	68687461	18	7748										
IFNG	0	genome.wustl.edu	37	chr12	68551735	68551735	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	aagtcatctcgtttctttttGttgctattgaaaaacttgac	6	7	3	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	12	68551735	68551735	G	C	SNP	IFNG	ENST00000229135	human	ensembl	69_37n	-1	known	missense	c.324	p.N108K	0.000	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537	77	0	0	97	38	28.15	-	-	-	C	68551735	G	C	68551735	3	2	130	1	0	0	0	0	1	0	0	0	7602	1368	48	4	184	4	IFNG	12	68551735	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		68551735	65300160	19	7749										
STX2	0	genome.wustl.edu	37	chr12	131306288	131306288	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	gtggtttttctttacttcttCaacatattgagttattttat	5	5	3	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	12	131306288	131306288	C	G	SNP	STX2	ENST00000392373	human	ensembl	69_37n	-1	known	missense	c.151	p.E51Q	0.734	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX2	HGNC	ENSG00000111450	95	0	0	128	43	25.15	-	-	-	G	131306288	C	G	131306288	3	3	130	1	0	0	0	0	1	0	0	0	15436	835	29	2	829	2	STX2	12	131306288	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	62754553	131306288	2545607	20	7750										
SMAD9	0	genome.wustl.edu	37	chr13	37453577	37453577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cacatggggcaggcccttgcGgtgggacacctgcagccgcc	15	15	0	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	13	37453577	37453577	G	A	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.250	p.R84C	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	17	0	0	19	6	24	-	-	-	A	37453577	G	A	37453577	3	1	130	1	0	0	0	0	1	0	0	0	14853	1116	39	1	1177	1	SMAD9	13	37453577	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		37453577	77716301	21	7751										
ABCC4	0	genome.wustl.edu	37	chr13	95830023	95830023	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	agaggatcgtccaggagataGatgtcagcatcttgatacac	11	8	2	4			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	13	95830023	95830023	G	A	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	silent	c.1665	p.I555	1.000	pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	40	0	0	52	28	35	-	-	-	A	95830023	G	A	95830023	2	1	130	1	0	0	0	0	0	0	0	1	55	932	33	2		2	ABCC4	13	95830023	Silent	SNP	G	TCGA-A7-A26F-01A-21D-A167-09	58376446	95830023	19339855	22	7752										
POLR2C	0	genome.wustl.edu	37	chr16	57504903	57504903	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	ctaggttttactacaatgtgGagtcctgtggctctctgcgt	11	9	1	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	16	57504903	57504903	G	T	SNP	POLR2C	ENST00000219252	human	ensembl	69_37n	1	known	nonsense	c.700	p.E234*	1.000	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_insert,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978	50	0	0	74	11	12.94	-	-	-	T	57504903	G	T	57504903	4	4	130	1	0	0	0	0	0	1	0	0	12290	1175	41	2	734	2	POLR2C	16	57504903	Nonsense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		57504903	32849850	23	7753										
ALOX15	0	genome.wustl.edu	37	chr17	4540413	4540413	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	atcctgagtcctctcacctgGatgaccatgggcaagagttt	10	11	1	3			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	4540413	4540413	G	C	SNP	ALOX15	ENST00000545513	human	ensembl	69_37n	-1	known	missense	c.1014	p.I338M	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX15	HGNC	ENSG00000161905	29	0	0	20	16	44.44	-	-	-	C	4540413	G	C	4540413	3	2	130	1	0	0	0	0	1	0	0	0	538	1164	41	2	1072	2	ALOX15	17	4540413	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		4540413	76654797	24	7754										
TP53	0	genome.wustl.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	32	0	0	32	14	30.43	-	-	-	A	7578403	C	A	7578403	3	1	130	1	0	0	0	0	1	0	0	0	16477	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	3037990	7578403	73616807	25	7755										
GPRC5C	0	genome.wustl.edu	37	chr17	72436047	72436047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	ctgtactacaacctgtgtgaCcgctctggggcgtggggcat	14	11	1	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	72436047	72436047	C	T	SNP	GPRC5C	ENST00000392628	human	ensembl	69_37n	1	putative	missense	c.190	p.P64S	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPRC5C	HGNC	ENSG00000170412	19	0	0	16	12	42.86	-	-	-	T	72436047	C	T	72436047	3	4	130	1	0	0	0	0	1	0	0	0	6777	506	18	4	281	4	GPRC5C	17	72436047	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	64857644	72436047	8759163	26	7756										
TMEM104	0	genome.wustl.edu	37	chr17	72832376	72832376	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	aacttcgcgcgctgtgacgtCgtgggcctggccgctgtgcg	16	13	0	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	72832376	72832376	C	T	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	silent	c.1041	p.V347	0.496	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	37	0	0	26	8	23.53	-	-	-	T	72832376	C	T	72832376	2	4	130	1	0	0	0	0	0	0	0	1	16113	871	31	1		1	TMEM104	17	72832376	Silent	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	396329	72832376	8362834	27	7757										
NWD1	0	genome.wustl.edu	37	chr19	16926010	16926010	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	gaacttcaagaaggcaatgtGgatggtcaaatccaggcaga	12	7	2	2			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	16926010	16926010	G	A	SNP	NWD1	ENST00000339803	human	ensembl	69_37n	1	known	nonsense	c.4160	p.W1387*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	35	0	0	46	10	17.86	-	-	-	A	16926010	G	A	16926010	4	1	130	1	0	0	0	0	0	1	0	0	10854	1357	47	4	4222	4	NWD1	19	16926010	Nonsense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09		16926010	42202973	28	7758										
MEGF8	0	genome.wustl.edu	37	chr19	42841015	42841015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	cgtggatcggcatgtgtggaCgacgctgaaggggcgggatg	20	7	0	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	42841015	42841015	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.1301	p.T434M	0.987	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	26	0	0	13	10	43.48	-	-	-	T	42841015	C	T	42841015	3	4	130	1	0	0	0	0	1	0	0	0	9534	536	19	1	1327	1	MEGF8	19	42841015	Missense_Mutation	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	25915005	42841015	16287968	29	7759										
GRIN2D	0	genome.wustl.edu	37	chr19	48945083	48945083	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	aattacatggcccgcaaggaCgagggctgcaagcttgtcac	12	11	1	0			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	48945083	48945083	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	silent	c.2310	p.D770	0.944	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	13	0	0	18	5	21.74	-	-	-	T	48945083	C	T	48945083	2	4	130	1	0	0	0	0	0	0	0	1	6833	535	19	1		1	GRIN2D	19	48945083	Silent	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	6104068	48945083	10183900	30	7760										
MYBPC2	0	genome.wustl.edu	37	chr19	50939080	50939080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	ctgcagaggagcccaccggcGttttcctgaagaagccggac	13	13	0	3			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	50939080	50939080	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.157	p.V53I	0.001	pfam_Ig_I-set	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	32	0	0	27	17	38.64	-	-	-	A	50939080	G	A	50939080	3	1	130	1	0	0	0	0	1	0	0	0	10084	1145	40	1	167	1	MYBPC2	19	50939080	Missense_Mutation	SNP	G	TCGA-A7-A26F-01A-21D-A167-09	1993997	50939080	8189903	31	7761										
SERPINA7	0	genome.wustl.edu	37	chrX	105278233	105278233	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	tttatcaacttacattggaaAgtttcagaccattgtcctct	5	9	3	1			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	X	105278233	105278233	A	T	SNP	SERPINA7	ENST00000327674	human	ensembl	69_37n	-1	known	missense	c.1037	p.L346H	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA7	HGNC	ENSG00000123561	36	0	0	71	20	21.98	-	-	-	T	105278233	A	T	105278233	3	4	130	1	0	0	0	0	1	0	0	0	14182	72	3	5	218	5	SERPINA7	23	105278233	Missense_Mutation	SNP	A	TCGA-A7-A26F-01A-21D-A167-09		105278233	49992327	32	7762										
RBM41	0	genome.wustl.edu	37	chrX	106310811	106310811	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.121212121212121	4	0.838150888885889	1.11851851851852	1.67777777777778	1.00666666666667	0.523809523809524	1	0	gcacatgatatgagagaagtCgcttggagatttgaccgttg	13	6	0	5			TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	X	106310811	106310811	C	G	SNP	RBM41	ENST00000372479	human	ensembl	69_37n	-1	known	silent	c.1188	p.A396	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682	52	0	0	141	24	14.55	-	-	-	G	106310811	C	G	106310811	2	3	130	1	0	0	0	0	0	0	0	1	13218	871	31	3		3	RBM41	23	106310811	Silent	SNP	C	TCGA-A7-A26F-01A-21D-A167-09	1032578	106310811	48959749	33	7763										
FLG2	0	genome.wustl.edu	37	chr1	152327936	152327936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gccagatgactgacttgagcCagaactgtgttggccatagc	12	10	0	5			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	1	152327936	152327936	C	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.2326	p.G776C	0.118	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	182	0	0	181	26	12.56	-	-	-	A	152327936	C	A	152327936	3	1	131	1	0	0	0	0	1	0	0	0	5969	594	21	4	4853	4	FLG2	1	152327936	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		152327936	96922685	1	7764										
FAM5C	0	genome.wustl.edu	37	chr1	190067488	190067488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tatagcccaggttccgggaaGggtcaataaactccagaggt	12	9	1	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	1	190067488	190067488	G	T	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1961	p.P654H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	56	0	0	63	14	18.18	-	-	-	T	190067488	G	T	190067488	3	4	131	1	0	0	0	0	1	0	0	0	5639	1000	35	4	343	4	FAM5C	1	190067488	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	37739552	190067488	59183133	2	7765										
DISC1	0	genome.wustl.edu	37	chr1	231830117	231830117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cccctcctggctctcacagtGcctttacctcaagctttagc	6	17	2	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	1	231830117	231830117	G	T	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	missense	c.613	p.A205S	0.000	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	21	0	0	20	4	16.67	-	-	-	T	231830117	G	T	231830117	3	4	131	1	0	0	0	0	1	0	0	0	4574	1319	46	4	619	4	DISC1	1	231830117	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	41762629	231830117	17420504	3	7766										
SEMA4C	0	genome.wustl.edu	37	chr2	97531630	97531630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gttcttccctttctggatacActcagtcttcttctccacgg	6	14	6	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	2	97531630	97531630	A	G	SNP	SEMA4C	ENST00000305476	human	ensembl	69_37n	-1	known	missense	c.295	p.C99R	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4C	HGNC	ENSG00000168758	71	0	0	61	14	18.42	-	-	-	G	97531630	A	G	97531630	3	3	131	1	0	0	0	0	1	0	0	0	14121	159	6	5	2254	5	SEMA4C	2	97531630	Missense_Mutation	SNP	A	TCGA-A7-A26G-01A-21D-A167-09		97531630	145667743	4	7767										
CNTNAP5	0	genome.wustl.edu	37	chr2	125530458	125530458	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tctccttctcttctgaatgaCaaccaatggcactatgtccg	6	13	3	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	2	125530458	125530458	C	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.2613	p.D871E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	89	0	0	80	17	17.53	-	-	-	A	125530458	C	A	125530458	3	1	131	1	0	0	0	0	1	0	0	0	3680	477	17	4	2679	4	CNTNAP5	2	125530458	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	27998828	125530458	117668915	5	7768										
SCN1A	0	genome.wustl.edu	37	chr2	166912953	166912953	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gtccaatcaggagggttactCattgtcataaacacacagtt	8	9	3	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	2	166912953	166912953	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.441	p.M147I	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	84	0	0	61	13	17.57	-	-	-	T	166912953	C	T	166912953	3	4	131	1	0	0	0	0	1	0	0	0	14002	826	29	2	5684	2	SCN1A	2	166912953	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	41382495	166912953	76286420	6	7769										
UBE2F	0	genome.wustl.edu	37	chr2	238933990	238933990	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctctgtgttgcagcctcccaAagtgaaatgcctgaccaaga	9	12	1	3			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	2	238933990	238933990	A	C	SNP	UBE2F	ENST00000272930	human	ensembl	69_37n	1	known	missense	c.290	p.K97T	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2F	HGNC	ENSG00000184182	92	0	0	69	15	17.86	-	-	-	C	238933990	A	C	238933990	3	2	131	1	0	0	0	0	1	0	0	0	16952	14	1	5	308	5	UBE2F	2	238933990	Missense_Mutation	SNP	A	TCGA-A7-A26G-01A-21D-A167-09	72021037	238933990	4265383	7	7770										
OSBPL10	0	genome.wustl.edu	37	chr3	31725409	31725409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tgaaatgtctcgcctatgatGgggttgtagggcttcttggc	14	7	2	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	31725409	31725409	G	A	SNP	OSBPL10	ENST00000429492	human	ensembl	69_37n	-1	putative	missense	c.749	p.P250L	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OSBPL10	HGNC	ENSG00000144645	40	0	0	46	17	26.98	-	-	-	A	31725409	G	A	31725409	3	1	131	1	0	0	0	0	1	0	0	0	11348	1335	47	4	871	4	OSBPL10	3	31725409	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		31725409	166297021	8	7771										
ARL6IP5	0	genome.wustl.edu	37	chr3	69134375	69134376	+	Splice_Site	INS	-	-	T													0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tgatgatttccattgtggggINStaagtggggtccccctaccc							TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	69134375	69134376	-	T	INS	ARL6IP5	ENST00000273258	human	ensembl	69_37n	1	known	splice_site_ins	c.176+1_176+1	e1+1	1.000:1.000	-	-	-	no_errors	ARL6IP5	HGNC	ENSG00000144746	28	0	0	23	5	17.86	-	-	-	T	69134376	-	T	69134375	8	5	131	1	0	1	1	0	0	0	1	0	948	1275	44	0	179	0	ARL6IP5	3	69134375	Splice_Site	INS	-	TCGA-A7-A26G-01A-21D-A167-09	37408966	69134375	128888055	9	7772										
PCCB	0	genome.wustl.edu	37	chr3	135974724	135974724	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctaacagccagggagaggatCagtctcttgctggaccctgg	13	11	2	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	135974724	135974724	C	T	SNP	PCCB	ENST00000462542	human	ensembl	69_37n	1	putative	missense	c.77	p.S26L	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C,prints_Acetyl_CoA_COase_Trfase_b_su	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PCCB	HGNC	ENSG00000114054	71	0	0	66	9	12	-	-	-	T	135974724	C	T	135974724	3	4	131	1	0	0	0	0	1	0	0	0	11578	816	29	2	216	2	PCCB	3	135974724	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	66840349	135974724	62047706	10	7773										
VEPH1	0	genome.wustl.edu	37	chr3	156979018	156979018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ttcttctgcattcttctcatCcttggccttaaagacatagg	6	11	4	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	156979018	156979018	C	G	SNP	VEPH1	ENST00000362010	human	ensembl	69_37n	-1	known	missense	c.2407	p.D803H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415	59	0	0	92	14	13.21	-	-	-	G	156979018	C	G	156979018	3	3	131	1	0	0	0	0	1	0	0	0	17251	855	30	2	98	2	VEPH1	3	156979018	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	21004294	156979018	41043412	11	7774										
EPHB3	0	genome.wustl.edu	37	chr3	184298863	184298863	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctgggtgcgggaccggaaccTcaggcccaaattctcccaga	12	14	2	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	184298863	184298863	T	A	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	missense	c.2642	p.L881H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	43	0	0	36	10	21.74	-	-	-	A	184298863	T	A	184298863	3	1	131	1	0	0	0	0	1	0	0	0	5213	1551	54	5	2696	5	EPHB3	3	184298863	Missense_Mutation	SNP	T	TCGA-A7-A26G-01A-21D-A167-09	27319845	184298863	13723567	12	7775										
LPP	0	genome.wustl.edu	37	chr3	188202440	188202440	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cagtgcccttccatctatctCtggaaactttcctcctccac	4	17	2	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	3	188202440	188202440	C	G	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.254	p.S85C	0.951	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	76	0	0	91	13	12.5	-	-	-	G	188202440	C	G	188202440	3	3	131	1	0	0	0	0	1	0	0	0	8989	913	32	2	260	2	LPP	3	188202440	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	3903577	188202440	9819990	13	7776										
COL25A1	0	genome.wustl.edu	37	chr4	109817822	109817822	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tcatgtcttacaaaactgtaCcttttcgcctgtgtcaccct	5	13	3	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	4	109817822	109817822	C	G	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	splice_site	c.906+1	e15+1	1.000	-	-	-	no_errors	COL25A1	HGNC	ENSG00000188517	57	0	0	64	12	15.79	-	-	-	G	109817822	C	G	109817822	5	3	131	1	0	0	0	0	0	0	1	0	3714	521	18	4	1233	4	COL25A1	4	109817822	Splice_Site	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		109817822	81336454	14	7777										
DNAH5	0	genome.wustl.edu	37	chr5	13901544	13901544	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gcccacaaaatctttccagcGatgggaggctggtttcgagc	12	11	1	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	5	13901544	13901544	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.1869	p.I623	0.884	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	56	0	0	37	10	21.28	-	-	-	A	13901544	G	A	13901544	2	1	131	1	0	0	0	0	0	0	0	1	4640	1048	37	1		1	DNAH5	5	13901544	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		13901544	167013716	15	7778										
NSD1	0	genome.wustl.edu	37	chr5	176637364	176637364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cctggatcccatagaacacaGctcagagtctgataacagtg	9	11	2	3			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	5	176637364	176637364	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.1964	p.S655N	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	42	0	0	28	19	40.43	-	-	-	A	176637364	G	A	176637364	3	1	131	1	0	0	0	0	1	0	0	0	10742	971	34	4	1978	4	NSD1	5	176637364	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	162735820	176637364	4277896	16	7779										
PPARD	0	genome.wustl.edu	37	chr6	35393844	35393844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctgctccaggagatctacaaGgacatgtactaacggcggca	11	11	1	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	6	35393844	35393844	G	A	SNP	PPARD	ENST00000311565	human	ensembl	69_37n	1	known	silent	c.1314	p.K438	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033	20	0	0	34	9	20.93	-	-	-	A	35393844	G	A	35393844	2	1	131	1	0	0	0	0	0	0	0	1	12371	991	35	4		4	PPARD	6	35393844	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		35393844	135721223	17	7780										
GFRAL	0	genome.wustl.edu	37	chr6	55216082	55216082	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	atgtggtcctgtttggaagtGgcagaggcatgtgtagggga	18	4	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	6	55216082	55216082	G	A	SNP	GFRAL	ENST00000340465	human	ensembl	69_37n	1	known	silent	c.402	p.V134	0.939	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871	93	0	0	68	13	16.05	-	-	-	A	55216082	G	A	55216082	2	1	131	1	0	0	0	0	0	0	0	1	6403	1335	47	4		4	GFRAL	6	55216082	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	19822238	55216082	115898985	18	7781										
PDE10A	0	genome.wustl.edu	37	chr6	165846532	165846532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cgagaataccaatcaagtcaCcaattgcagtgacaattggt	8	9	2	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	6	165846532	165846532	C	A	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.623	p.G208V	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	39	0	0	48	7	12.73	-	-	-	A	165846532	C	A	165846532	3	1	131	1	0	0	0	0	1	0	0	0	11703	507	18	4	1810	4	PDE10A	6	165846532	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	110630450	165846532	5268535	19	7782										
ABCA13	0	genome.wustl.edu	37	chr7	48318080	48318080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ggcaagacttctggatacaaTtttacactctcctaataagg	7	9	2	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	7	48318080	48318080	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.7289	p.I2430T	0.004	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	39	0	0	63	10	13.7	-	-	-	C	48318080	T	C	48318080	3	2	131	1	0	0	0	0	1	0	0	0	31	1493	52	5	7188	5	ABCA13	7	48318080	Missense_Mutation	SNP	T	TCGA-A7-A26G-01A-21D-A167-09		48318080	110820583	20	7783										
PCLO	0	genome.wustl.edu	37	chr7	82579110	82579110	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cggaggtgagatgaataaccAatctctaaaggtgttgggcg	14	6	1	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	7	82579110	82579110	A	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.10794	p.I3598	0.195	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	69	0	0	70	12	14.63	-	-	-	T	82579110	A	T	82579110	2	4	131	1	0	0	0	0	0	0	0	1	11656	126	5	5		5	PCLO	7	82579110	Silent	SNP	A	TCGA-A7-A26G-01A-21D-A167-09	34261030	82579110	76559553	21	7784										
ASNS	0	genome.wustl.edu	37	chr7	97498300	97498300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tcgaattggctgcattccaaAcagcgggtcaactaccgcca	9	13	1	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	7	97498300	97498300	A	G	SNP	ASNS	ENST00000175506	human	ensembl	69_37n	-1	known	missense	c.169	p.F57L	1.000	tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669	65	0	0	40	11	21.57	-	-	-	G	97498300	A	G	97498300	3	3	131	1	0	0	0	0	1	0	0	0	1052	43	2	5	1560	5	ASNS	7	97498300	Missense_Mutation	SNP	A	TCGA-A7-A26G-01A-21D-A167-09	14919190	97498300	61640363	22	7785										
C9orf142	0	genome.wustl.edu	37	chr9	139887830	139887830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctgtcagcccgaggaagagcCcccggcctgcagggcctcag	14	16	2	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	9	139887830	139887830	C	A	SNP	C9orf142	ENST00000371620	human	ensembl	69_37n	1	known	missense	c.457	p.P153T	0.000	NULL	NULL	-	no_errors	C9orf142	HGNC	ENSG00000148362	18	0	0	9	10	52.63	-	-	-	A	139887830	C	A	139887830	3	1	131	1	0	0	0	0	1	0	0	0	2486	623	22	4	475	4	C9orf142	9	139887830	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		139887830	1325601	23	7786										
PTEN	0	genome.wustl.edu	37	chr10	89692920	89692920	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gggacgaactggtgtaatgaTatgtgcatatttattacatc	10	5	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	10	89692920	89692920	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.404	p.I135K	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	57	0	0	51	9	15	-	-	-	A	89692920	T	A	89692920	3	1	131	1	0	0	0	0	1	0	0	0	12818	1406	49	5	422	5	PTEN	10	89692920	Missense_Mutation	SNP	T	TCGA-A7-A26G-01A-21D-A167-09		89692920	45841827	24	7787										
MUC5B	0	genome.wustl.edu	37	chr11	1266561	1266561	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	agccctcaccctagcagcagGaccaccgagtcacccccttc	7	20	2	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	11	1266561	1266561	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.8460	p.R2820	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	87	0	0	63	11	14.86	-	-	-	A	1266561	G	A	1266561	2	1	131	1	0	0	0	0	0	0	0	1	10051	1165	41	2		2	MUC5B	11	1266561	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		1266561	133739955	25	7788										
OR4C15	0	genome.wustl.edu	37	chr11	55322874	55322874	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctgatggtggtttctgatgaGaaagaaaatattaaacttta	9	3	1	4			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	11	55322874	55322874	G	T	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	missense	c.1092	p.E364D	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	25	0	0	40	9	18.37	-	-	-	T	55322874	G	T	55322874	3	4	131	1	0	0	0	0	1	0	0	0	11121	933	33	2	1094	2	OR4C15	11	55322874	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	54056313	55322874	79683642	26	7789										
OR5T1	0	genome.wustl.edu	37	chr11	56043960	56043960	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tccagctacacttcggacaaTgacatgatagtgtcaatatt	7	9	1	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	11	56043960	56043960	T	A	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.846	p.N282K	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	64	0	0	65	23	26.14	-	-	-	A	56043960	T	A	56043960	3	1	131	1	0	0	0	0	1	0	0	0	11254	1461	51	5	848	5	OR5T1	11	56043960	Missense_Mutation	SNP	T	TCGA-A7-A26G-01A-21D-A167-09	721086	56043960	78962556	27	7790										
AHNAK	0	genome.wustl.edu	37	chr11	62300539	62300539	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gtaggcagtgtcacatcaatCccagtttcctctccctttgc	7	14	3	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	11	62300539	62300539	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.1350	p.G450	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	58	0	0	79	25	24.04	-	-	-	A	62300539	C	A	62300539	2	1	131	1	0	0	0	0	0	0	0	1	414	842	30	2		2	AHNAK	11	62300539	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	6256579	62300539	72705977	28	7791										
FLI1	0	genome.wustl.edu	37	chr11	128680835	128680835	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	taccccaaccccaacgtcccCcgccatcctaacacccacgt	3	23	0	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	11	128680835	128680835	C	A	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	silent	c.1311	p.P437	0.552	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	53	0	0	45	9	16.67	-	-	-	A	128680835	C	A	128680835	2	1	131	1	0	0	0	0	0	0	0	1	5970	610	22	4		4	FLI1	11	128680835	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	66380296	128680835	6325681	29	7792										
PDZRN4	0	genome.wustl.edu	37	chr12	41967119	41967119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tatgcaaacatcccagcacaCgcccggcattatcaaagcta	6	14	1	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	12	41967119	41967119	C	T	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	silent	c.2538	p.H846	0.768	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	53	0	0	29	14	32.56	-	-	-	T	41967119	C	T	41967119	2	4	131	1	0	0	0	0	0	0	0	1	11783	535	19	1		1	PDZRN4	12	41967119	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		41967119	91884776	30	7793										
REC8	0	genome.wustl.edu	37	chr14	24649088	24649088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tcagcccccgcaggatggctGcccgggtcttctacctgctc	11	17	3	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	14	24649088	24649088	G	A	SNP	REC8	ENST00000311457	human	ensembl	69_37n	1	known	missense	c.1531	p.A511T	0.056	pfam_Rad21/Rec8_C_eu	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	38	0	0	40	11	21.57	-	-	-	A	24649088	G	A	24649088	3	1	131	1	0	0	0	0	1	0	0	0	13282	1319	46	4	1601	4	REC8	14	24649088	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		24649088	82700452	31	7794										
SNRPN	0	genome.wustl.edu	37	chr15	25223448	25223448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gcctccgggaatgagaccccCtccaccaggcattagaggtg	12	14	0	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	15	25223448	25223448	C	T	SNP	SNRPN	ENST00000444203	human	ensembl	69_37n	1	known	missense	c.680	p.P227L	1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739	55	0	0	74	18	19.57	-	-	-	T	25223448	C	T	25223448	3	4	131	1	0	0	0	0	1	0	0	0	14959	681	24	4	690	4	SNRPN	15	25223448	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		25223448	77307944	32	7795										
OTUD7A	0	genome.wustl.edu	37	chr15	31776558	31776558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	gctggccgacgcaccagactCctccttgctgcccttgcgcg	11	18	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	15	31776558	31776558	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.1741	p.E581K	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	28	0	0	15	5	25	-	-	-	T	31776558	C	T	31776558	3	4	131	1	0	0	0	0	1	0	0	0	11391	864	30	2	1064	2	OTUD7A	15	31776558	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	6553110	31776558	70754834	33	7796										
TEKT5	0	genome.wustl.edu	37	chr16	10788509	10788509	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	agtgtgggcaggatggtgggCggccgcagggtactggtgct	21	7	0	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	16	10788509	10788509	C	T	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	silent	c.222	p.P74	0.027	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	71	0	0	38	13	25.49	-	-	-	T	10788509	C	T	10788509	2	4	131	1	0	0	0	0	0	0	0	1	15851	755	27	1		1	TEKT5	16	10788509	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		10788509	79566244	34	7797										
ACSF3	0	genome.wustl.edu	37	chr16	89220512	89220512	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ctgcagaaatgtcctggcccCgtacgcggtgccctcggagc	13	15	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	16	89220512	89220512	C	G	SNP	ACSF3	ENST00000317447	human	ensembl	69_37n	1	known	missense	c.1628	p.P543R	0.973	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	22	0	0	27	10	27.03	-	-	-	G	89220512	C	G	89220512	3	3	131	1	0	0	0	0	1	0	0	0	176	652	23	3	1662	3	ACSF3	16	89220512	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	78432003	89220512	1134241	35	7798										
TP53	0	genome.wustl.edu	37	chr17	7578191	7578191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ccagacctcaggcggctcatAgggcaccaccacactatgtc	9	16	2	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	17	7578191	7578191	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.658	p.Y220H	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	70	0	0	42	19	31.15	-	-	-	G	7578191	A	G	7578191	3	3	131	1	0	0	0	0	1	0	0	0	16477	420	15	5	636	5	TP53	17	7578191	Missense_Mutation	SNP	A	TCGA-A7-A26G-01A-21D-A167-09		7578191	73617019	36	7799										
SPAG5	0	genome.wustl.edu	37	chr17	26912598	26912598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ggcctctgaattcccgcatgGatgctaggtcctgttccagc	11	13	1	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	17	26912598	26912598	G	A	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.1814	p.S605F	0.037	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	50	0	0	56	7	11.11	-	-	-	A	26912598	G	A	26912598	3	1	131	1	0	0	0	0	1	0	0	0	15072	1174	41	2	1835	2	SPAG5	17	26912598	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	19334407	26912598	54282612	37	7800										
CDK12	0	genome.wustl.edu	37	chr17	37666015	37666016	+	Splice_Site	INS	-	-	T													0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tctataactctgaagagaggINStaaggcattaattaaaatta							TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	17	37666015	37666016	-	T	INS	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	splice_site_ins	c.2666+1_2666+1	e7+1	1.000:1.000	-	-	-	no_errors	CDK12	HGNC	ENSG00000167258	90	0	0	69	17	19.77	-	-	-	T	37666016	-	T	37666015	8	5	131	1	0	1	1	0	0	0	1	0	3157	1275	44	0	2693	0	CDK12	17	37666015	Splice_Site	INS	-	TCGA-A7-A26G-01A-21D-A167-09	10753417	37666015	43529195	38	7801										
ROCK1	0	genome.wustl.edu	37	chr18	18534990	18534990	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	atcttttctacattcaccttCatttgcatatagtatctaca	2	10	5	0			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	18	18534990	18534990	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.3607	p.E1203K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	85	0	0	81	15	15.62	-	-	-	T	18534990	C	T	18534990	3	4	131	1	0	0	0	0	1	0	0	0	13603	835	29	2	469	2	ROCK1	18	18534990	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		18534990	59542258	39	7802										
LGALS13	0	genome.wustl.edu	37	chr19	40095975	40095975	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	caacagactacgtgccctttGaggatggcaaacaatttgag	10	9	0	3			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	19	40095975	40095975	G	A	SNP	LGALS13	ENST00000221797	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	0.024	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS13	HGNC	ENSG00000105198	70	0	0	66	22	25	-	-	-	A	40095975	G	A	40095975	3	1	131	1	0	0	0	0	1	0	0	0	8794	1291	45	2	260	2	LGALS13	19	40095975	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		40095975	19033008	40	7803										
FCGBP	0	genome.wustl.edu	37	chr19	40399508	40399508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tgtgctgacgggctggcagcCgtgctggccggatggcagga	19	10	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	19	40399508	40399508	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.6187	p.G2063S	0.977	smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	25	0	0	11	3	21.43	-	-	-	T	40399508	C	T	40399508	3	4	131	1	0	0	0	0	1	0	0	0	5824	652	23	1	10126	1	FCGBP	19	40399508	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	303533	40399508	18729475	41	7804										
EPS8L1	0	genome.wustl.edu	37	chr19	55598981	55598981	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ggtggaaatggaggtcatttGacctgccaggcgcccttcgc	14	11	1	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	19	55598981	55598981	G	A	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	silent	c.2171	p.*724	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	60	0	0	41	7	14.58	-	-	-	A	55598981	G	A	55598981	2	1	131	1	0	0	0	0	0	0	0	1	5232	1285	45	2		2	EPS8L1	19	55598981	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09	15199473	55598981	3530002	42	7805										
ZNF470	0	genome.wustl.edu	37	chr19	57089783	57089783	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	aaagccttcagccaggttgcCcatcttactctacataagag	7	12	3	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	19	57089783	57089783	C	A	SNP	ZNF470	ENST00000330619	human	ensembl	69_37n	1	known	silent	c.1986	p.A662	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	55	0	0	56	10	15.15	-	-	-	A	57089783	C	A	57089783	2	1	131	1	0	0	0	0	0	0	0	1	18025	610	22	4		4	ZNF470	19	57089783	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	1490802	57089783	2039200	43	7806										
RNF24	0	genome.wustl.edu	37	chr20	3944669	3944669	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ggaaatccgagctcatggatGaactgtgggggaagaaaaga	15	5	1	3			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	20	3944669	3944669	G	A	SNP	RNF24	ENST00000432261	human	ensembl	69_37n	-1	known	missense	c.59	p.S20L	0.998	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF24	HGNC	ENSG00000101236	34	0	0	38	19	33.33	-	-	-	A	3944669	G	A	3944669	3	1	131	1	0	0	0	0	1	0	0	0	13570	1294	45	2	470	2	RNF24	20	3944669	Missense_Mutation	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		3944669	59080851	44	7807										
PCBP3	0	genome.wustl.edu	37	chr21	47349884	47349884	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	caaaccccctttcctcccctCggacagaccaaccccgcttt	4	21	0	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	21	47349884	47349884	C	T	SNP	PCBP3	ENST00000400314	human	ensembl	69_37n	1	known	silent	c.771	p.L257	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570	60	0	0	60	9	13.04	-	-	-	T	47349884	C	T	47349884	2	4	131	1	0	0	0	0	0	0	0	1	11575	871	31	1		1	PCBP3	21	47349884	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09		47349884	780011	45	7808										
GRIPAP1	0	genome.wustl.edu	37	chrX	48838243	48838243	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tgctgctcccgacactgcttGagggcttcctcttgttcctg	10	14	1	1			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	X	48838243	48838243	G	C	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	silent	c.1641	p.L547	0.005	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	77	0	0	37	9	19.57	-	-	-	C	48838243	G	C	48838243	2	2	131	1	0	0	0	0	0	0	0	1	6840	1277	45	2		2	GRIPAP1	23	48838243	Silent	SNP	G	TCGA-A7-A26G-01A-21D-A167-09		48838243	106432317	46	7809										
GPR174	0	genome.wustl.edu	37	chrX	78427390	78427390	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	cagtcatatactacttttccActaatgagttccgaagacgg	7	10	1	2			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	X	78427390	78427390	A	T	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	1	known	missense	c.886	p.T296S	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	83	0	0	69	18	20.69	-	-	-	T	78427390	A	T	78427390	3	4	131	1	0	0	0	0	1	0	0	0	6722	159	6	5	888	5	GPR174	23	78427390	Missense_Mutation	SNP	A	TCGA-A7-A26G-01A-21D-A167-09	29589147	78427390	76843170	47	7810										
FAM46D	0	genome.wustl.edu	37	chrX	79699057	79699057	+	Missense_Mutation	SNP	C	C	A													0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	tggagaactaaatattctacCcaatacacaaaaggtaactt							TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	X	79699057	79699057	C	A	SNP	FAM46D	ENST00000308293	human	ensembl	69_37n	1	known	missense	c.1019	p.P340H	1.000	NULL	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	53	0	0	43	13	23.21	-	-	-	A	79699057	C	A	79699057	3	1	131	1	0	0	0	0	1	0	0	0	5614	623	22	4	1021	4	FAM46D	23	79699057	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	1271667	79699057	75571503	48	7811	60	2								
FAM46D	0	genome.wustl.edu	37	chrX	79699058	79699058	+	Silent	SNP	C	C	A													0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	ggagaactaaatattctaccCaatacacaaaaggtaacttg							TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	X	79699058	79699058	C	A	SNP	FAM46D	ENST00000308293	human	ensembl	69_37n	1	known	silent	c.1020	p.P340	0.983	NULL	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	53	0	0	43	13	23.21	-	-	-	A	79699058	C	A	79699058	2	1	131	1	0	0	0	0	0	0	0	1	5614	581	21	4		4	FAM46D	23	79699058	Silent	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	1	79699058	75571502	49	7812	60	2								
MTM1	0	genome.wustl.edu	37	chrX	149787533	149787533	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.0460603632339614	2.55232	3.1904	2.3928	0.153434800493624	0.661053898161957	5	catgagaaacctgaggttcgCtttgaaacaggaaggccaca	11	9	0	3			TCGA-A7-A26G-01A-21D-A167-09	TCGA-A7-A26G-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36d1a85e-a09b-4537-86e0-eaf1eb03aed8	5f0452c9-2310-4118-b895-cf8aa79f1ccf	X	149787533	149787533	C	A	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.365	p.A122D	0.999	NULL	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	59	0	0	73	11	13.1	-	-	-	A	149787533	C	A	149787533	3	1	131	1	0	0	0	0	1	0	0	0	10009	797	28	4	383	4	MTM1	23	149787533	Missense_Mutation	SNP	C	TCGA-A7-A26G-01A-21D-A167-09	70088475	149787533	5483027	50	7813										
NADK	0	genome.wustl.edu	37	chr1	1688035	1688035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cactttcttttccacatacaCgatcatgttctcctggaagc	5	13	3	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	1688035	1688035	C	T	SNP	NADK	ENST00000344463	human	ensembl	69_37n	-1	known	missense	c.841	p.V281M	1.000	superfamily_ATP-NAD_kinase_PpnK-typ	pfam_polyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130	44	0	0	33	9	21.43	-	-	-	T	1688035	C	T	1688035	3	4	132	1	0	0	0	0	1	0	0	0	10209	536	19	1	966	1	NADK	1	1688035	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		1688035	247562586	1	7814										
DNAJC16	0	genome.wustl.edu	37	chr1	15890821	15890821	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctctgcttctgactacatctCagactgctgggatagcattt	8	11	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	15890821	15890821	C	G	SNP	DNAJC16	ENST00000375847	human	ensembl	69_37n	1	known	nonsense	c.1565	p.S522*	0.993	NULL	pfam_DnaJ_N,pfam_Thioredoxin_domain,superfamily_DnaJ_N,superfamily_Thioredoxin-like_fold,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC16	HGNC	ENSG00000116138	102	0	0	48	22	31.43	-	-	-	G	15890821	C	G	15890821	4	3	132	1	0	0	0	0	0	1	0	0	4670	838	29	2	1603	2	DNAJC16	1	15890821	Nonsense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	14202786	15890821	233359800	2	7815										
NBPF1	0	genome.wustl.edu	37	chr1	16901095	16901095	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ttttcctatgtggctggttgGagtcataagggccatggcta	13	7	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	16901095	16901095	G	C	SNP	NBPF1	ENST00000287968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	144	0	0	89	30	25.21	-	-	-	C	16901095	G	C	16901095	1	2	132	0	1	0	0	0	0	0	0	0	10264	1174	41	2		2	NBPF1	1	16901095	RNA	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	1010274	16901095	232349526	3	7816										
ZNHIT6	0	genome.wustl.edu	37	chr1	86173517	86173517	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atccttctcttccttcacttCtgaccagtccattacctctt	2	16	4	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	86173517	86173517	C	G	SNP	ZNHIT6	ENST00000370574	human	ensembl	69_37n	-1	known	missense	c.451	p.E151Q	0.152	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT6	HGNC	ENSG00000117174	132	1	0.75	63	38	37.25	-	-	-	G	86173517	C	G	86173517	3	3	132	1	0	0	0	0	1	0	0	0	18302	922	32	2	1001	2	ZNHIT6	1	86173517	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	69272422	86173517	163077104	4	7817										
ASTN1	0	genome.wustl.edu	37	chr1	176915214	176915214	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	caggtctccgtgatgagttgGcaagagcgtccatccacacc	11	13	1	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	176915214	176915214	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	nonsense	c.2121	p.C707*	1.000	smart_EGF-like	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	33	0	0	28	5	15.15	-	-	-	T	176915214	G	T	176915214	4	4	132	1	0	0	0	0	0	1	0	0	1068	1195	42	4	1835	4	ASTN1	1	176915214	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	90741697	176915214	72335407	5	7818										
XPR1	0	genome.wustl.edu	37	chr1	180651527	180651527	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tatgctgtattcagctcaggAccaggcaccttctgtggaag	11	10	3	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	180651527	180651527	A	G	SNP	XPR1	ENST00000367590	human	ensembl	69_37n	1	known	missense	c.101	p.D34G	1.000	pfam_SPX_N	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324	25	0	0	29	18	38.3	-	-	-	G	180651527	A	G	180651527	3	3	132	1	0	0	0	0	1	0	0	0	17548	275	10	5	107	5	XPR1	1	180651527	Missense_Mutation	SNP	A	TCGA-A7-A26H-01A-11D-A167-09	3736313	180651527	68599094	6	7819										
CDC42BPA	0	genome.wustl.edu	37	chr1	227261635	227261635	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ggcctgtttggctcttatttCtgcatccagagccgactgca	10	12	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	1	227261635	227261635	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.2665	p.E889K	1.000	pfam_Myotonic_dystrophy_kinase_coil	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	125	0	0	104	27	20.61	-	-	-	T	227261635	C	T	227261635	3	4	132	1	0	0	0	0	1	0	0	0	3101	922	32	2	2566	2	CDC42BPA	1	227261635	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	46610108	227261635	21988986	7	7820										
ALMS1	0	genome.wustl.edu	37	chr2	73799946	73799946	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cacattctctccaggtctcaGaaagtacacatgatgatagc	7	11	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	73799946	73799946	G	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	nonsense	c.10939	p.E3647*	0.993	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	43	0	0	30	11	26.83	-	-	-	T	73799946	G	T	73799946	4	4	132	1	0	0	0	0	0	1	0	0	535	943	33	2	11001	2	ALMS1	2	73799946	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		73799946	169399427	8	7821										
FMNL2	0	genome.wustl.edu	37	chr2	153496517	153496517	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ggaaaaagcaggaacaagctCtcatggaaaaactcctagag	10	8	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	153496517	153496517	C	T	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	missense	c.2992	p.L998F	0.678	superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	46	0	0	39	5	11.36	-	-	-	T	153496517	C	T	153496517	3	4	132	1	0	0	0	0	1	0	0	0	5998	913	32	2	3086	2	FMNL2	2	153496517	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	79696571	153496517	89702856	9	7822										
PRPF40A	0	genome.wustl.edu	37	chr2	153533228	153533228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cggcagcagccatggtgctcAttgtggtcggaatttctgtt	13	9	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	153533228	153533228	A	C	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	missense	c.722	p.M241R	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	180	0	0	74	29	28.16	-	-	-	C	153533228	A	C	153533228	3	2	132	1	0	0	0	0	1	0	0	0	12652	217	8	5	2138	5	PRPF40A	2	153533228	Missense_Mutation	SNP	A	TCGA-A7-A26H-01A-11D-A167-09	36711	153533228	89666145	10	7823										
LRP2	0	genome.wustl.edu	37	chr2	170044543	170044543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gttgcagagtttcatcatctCgatgcagcgcccattgtcac	9	12	4	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	170044543	170044543	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.9265	p.E3089K	0.906	pfam_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	44	0	0	21	6	22.22	-	-	-	T	170044543	C	T	170044543	3	4	132	1	0	0	0	0	1	0	0	0	9022	893	31	1	4826	1	LRP2	2	170044543	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	16511315	170044543	73154830	11	7824										
IDH1	0	genome.wustl.edu	37	chr2	209113243	209113243	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ggtgatttccacatttgtttCaacttgaactcctcaaccct	5	12	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	209113243	209113243	C	T	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	silent	c.264	p.L88	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	109	0	0	49	11	18.33	-	-	-	T	209113243	C	T	209113243	2	4	132	1	0	0	0	0	0	0	0	1	7548	825	29	2		2	IDH1	2	209113243	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	39068700	209113243	34086130	12	7825										
MAP2	0	genome.wustl.edu	37	chr2	210558835	210558835	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcacagagttatccatcagaTttacctgaagaacccagttc	7	11	1	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	210558835	210558835	T	C	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	silent	c.1941	p.D647	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	46	0	0	22	12	35.29	-	-	-	C	210558835	T	C	210558835	2	2	132	1	0	0	0	0	0	0	0	1	9306	1490	52	5		5	MAP2	2	210558835	Silent	SNP	T	TCGA-A7-A26H-01A-11D-A167-09	1445592	210558835	32640538	13	7826										
CCDC108	0	genome.wustl.edu	37	chr2	219895964	219895964	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcctggcctggctccaggagCcccgtggcgggcagcatctg	16	15	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	2	219895964	219895964	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	silent	c.879	p.G293	0.466	superfamily_PapD-like	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	21	0	0	8	5	38.46	-	-	-	T	219895964	C	T	219895964	2	4	132	1	0	0	0	0	0	0	0	1	2768	726	26	4		4	CCDC108	2	219895964	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	9337129	219895964	23303409	14	7827										
CTNNB1	0	genome.wustl.edu	37	chr3	41280699	41280699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tggaccccatgatggaacatGagatgggtggccaccaccct	12	12	0	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	3	41280699	41280699	G	A	SNP	CTNNB1	ENST00000349496	human	ensembl	69_37n	1	known	missense	c.2212	p.E738K	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	CTNNB1	HGNC	ENSG00000168036	36	0	0	12	5	29.41	-	-	-	A	41280699	G	A	41280699	3	1	132	1	0	0	0	0	1	0	0	0	4048	1291	45	2	2266	2	CTNNB1	3	41280699	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		41280699	156741731	15	7828										
OR5K3	0	genome.wustl.edu	37	chr3	98110426	98110426	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gaaaaaaattatgaagaagaGaaaattttgtcacattctga	7	3	2	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	3	98110426	98110426	G	A	SNP	OR5K3	ENST00000383695	human	ensembl	69_37n	1	known	missense	c.917	p.R306K	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536	19	0	0	17	7	29.17	-	-	-	A	98110426	G	A	98110426	3	1	132	1	0	0	0	0	1	0	0	0	11241	942	33	2	919	2	OR5K3	3	98110426	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	56829727	98110426	99912004	16	7829										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0	32	19	37.25	-	-	-	G	178952085	A	G	178952085	3	3	132	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A7-A26H-01A-11D-A167-09	80841659	178952085	19070345	17	7830										
CRMP1	0	genome.wustl.edu	37	chr4	5830394	5830394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cgaagatgttgtactccaccGcctgcaccaacagcctcagt	8	15	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	4	5830394	5830394	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.1625	p.A542V	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	47	0	0	10	6	37.5	-	-	-	A	5830394	G	A	5830394	3	1	132	1	0	0	0	0	1	0	0	0	3920	1101	38	1	447	1	CRMP1	4	5830394	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		5830394	185323882	18	7831										
FNIP2	0	genome.wustl.edu	37	chr4	159791486	159791486	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tctcagagcatcagcacccaGaatgtaaggaactttggccg	10	11	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	4	159791486	159791486	G	A	SNP	FNIP2	ENST00000379346	human	ensembl	69_37n	1	known	silent	c.2883	p.Q961	0.002	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795	56	0	0	25	8	24.24	-	-	-	A	159791486	G	A	159791486	2	1	132	1	0	0	0	0	0	0	0	1	6022	933	33	2		2	FNIP2	4	159791486	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	153961092	159791486	31362790	19	7832										
FAM105B	0	genome.wustl.edu	37	chr5	14693019	14693019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	accatccaggtgtaccggctCtccaagtacaacacggaaga	9	13	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	5	14693019	14693019	C	G	SNP	FAM105B	ENST00000506417	human	ensembl	69_37n	1	novel	missense	c.115	p.L39V	0.999	prints_FAM105	prints_FAM105	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM105B	HGNC	ENSG00000154124	47	0	0	15	11	42.31	-	-	-	G	14693019	C	G	14693019	3	3	132	1	0	0	0	0	1	0	0	0	5428	900	32	2	947	2	FAM105B	5	14693019	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		14693019	166222241	20	7833										
BDP1	0	genome.wustl.edu	37	chr5	70757714	70757714	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tcgttcaaaaatgactatgaGagacttcatatattatctac	5	7	3	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	5	70757714	70757714	G	A	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.560	p.R187K	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	26	0	0	13	4	23.53	-	-	-	A	70757714	G	A	70757714	3	1	132	1	0	0	0	0	1	0	0	0	1399	942	33	2	570	2	BDP1	5	70757714	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	56064695	70757714	110157546	21	7834										
PCDHA9	0	genome.wustl.edu	37	chr5	140228399	140228399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cggagtgcagcatccacctgGaggtgatcgtagacaggccg	15	11	0	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	5	140228399	140228399	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.319	p.E107K	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	54	0	0	43	9	17.31	-	-	-	A	140228399	G	A	140228399	3	1	132	1	0	0	0	0	1	0	0	0	11604	1175	41	2	321	2	PCDHA9	5	140228399	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	69470685	140228399	40686861	22	7835										
PCDHB4	0	genome.wustl.edu	37	chr5	140503864	140503864	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	caggagactctgggactggtGagttcaagttcctgaagcca	13	9	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	5	140503864	140503864	G	T	SNP	PCDHB4	ENST00000194152	human	ensembl	69_37n	1	known	nonsense	c.2284	p.E762*	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	39	0	0	19	5	20.83	-	-	-	T	140503864	G	T	140503864	4	4	132	1	0	0	0	0	0	1	0	0	11617	1291	45	2	2286	2	PCDHB4	5	140503864	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	275465	140503864	40411396	23	7836										
GFPT2	0	genome.wustl.edu	37	chr5	179757778	179757778	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ttgtcgaacacatatttaatCagcttggcgatggtctctgt	9	8	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	5	179757778	179757778	C	G	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	silent	c.456	p.L152	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	149	0	0	88	16	15.38	-	-	-	G	179757778	C	G	179757778	2	3	132	1	0	0	0	0	0	0	0	1	6398	813	29	2		2	GFPT2	5	179757778	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	39253914	179757778	1157482	24	7837										
COL9A1	0	genome.wustl.edu	37	chr6	70948982	70948982	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cctttgggccaggtaatcctAtatctccctaaatcaataaa	5	11	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	6	70948982	70948982	A	T	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.2087	p.I696K	0.983	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	34	0	0	25	10	28.57	-	-	-	T	70948982	A	T	70948982	3	4	132	1	0	0	0	0	1	0	0	0	3737	449	16	5	702	5	COL9A1	6	70948982	Missense_Mutation	SNP	A	TCGA-A7-A26H-01A-11D-A167-09		70948982	100166085	25	7838										
RNGTT	0	genome.wustl.edu	37	chr6	89638949	89638949	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	catttcggtcatagaaccttGaagtatttgtcaggtccacc	8	10	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	6	89638949	89638949	G	A	SNP	RNGTT	ENST00000369485	human	ensembl	69_37n	-1	known	missense	c.212	p.S71L	0.997	pfam_Dual-sp_phosphatase_cat-dom,pirsf_mRNA_cap_enz_bifunc	pfam_mRNA_cap_enzyme,pfam_mRNA_cap_enzyme_C,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_NA-bd_OB-fold-like,pirsf_mRNA_cap_enz_bifunc,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	RNGTT	HGNC	ENSG00000111880	16	0	0	21	5	19.23	-	-	-	A	89638949	G	A	89638949	3	1	132	1	0	0	0	0	1	0	0	0	13589	1294	45	2	1637	2	RNGTT	6	89638949	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	18689967	89638949	81476118	26	7839										
IL20RA	0	genome.wustl.edu	37	chr6	137330612	137330612	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atctgtagtcagtgccacctCtggtgggccaatttgtgctt	11	10	3	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	6	137330612	137330612	C	A	SNP	IL20RA	ENST00000316649	human	ensembl	69_37n	-1	known	nonsense	c.421	p.E141*	0.443	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL20RA	HGNC	ENSG00000016402	43	0	0	29	5	14.71	-	-	-	A	137330612	C	A	137330612	4	1	132	1	0	0	0	0	0	1	0	0	7722	922	32	2	1256	2	IL20RA	6	137330612	Nonsense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	47691663	137330612	33784455	27	7840										
IGF2R	0	genome.wustl.edu	37	chr6	160461698	160461698	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aaggagaaggaagacctcctCtgcggtgccaccgacgggaa	14	11	1	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	6	160461698	160461698	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.1422	p.L474	1.000	pfam_CIMR	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	33	0	0	16	5	23.81	-	-	-	T	160461698	C	T	160461698	2	4	132	1	0	0	0	0	0	0	0	1	7630	900	32	2		2	IGF2R	6	160461698	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	23131086	160461698	10653369	28	7841										
C7orf50	0	genome.wustl.edu	37	chr7	1166897	1166897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcacaggcggccttaccttgGagccggctccttcgccactt	11	16	0	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	7	1166897	1166897	G	C	SNP	C7orf50	ENST00000357429	human	ensembl	69_37n	-1	known	missense	c.125	p.S42C	0.000	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540	48	0	0	33	11	25	-	-	-	C	1166897	G	C	1166897	3	2	132	1	0	0	0	0	1	0	0	0	2422	1174	41	2	475	2	C7orf50	7	1166897	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		1166897	157971766	29	7842										
GRM3	0	genome.wustl.edu	37	chr7	86415885	86415885	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cgcaagtcctacgacagcgtGatccgagaactgttgcagaa	11	11	0	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	7	86415885	86415885	G	A	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	silent	c.777	p.V259	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	19	0	0	19	7	26.92	-	-	-	A	86415885	G	A	86415885	2	1	132	1	0	0	0	0	0	0	0	1	6849	1277	45	2		2	GRM3	7	86415885	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	85248988	86415885	72722778	30	7843										
LRGUK	0	genome.wustl.edu	37	chr7	133863335	133863335	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	acccatgttgtcaacagcgtGatgcagccgcagaggatctt	11	11	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	7	133863335	133863335	G	A	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	silent	c.1188	p.V396	1.000	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	35	0	0	20	6	23.08	-	-	-	A	133863335	G	A	133863335	2	1	132	1	0	0	0	0	0	0	0	1	9009	1277	45	2		2	LRGUK	7	133863335	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	47447450	133863335	25275328	31	7844										
HIPK2	0	genome.wustl.edu	37	chr7	139299077	139299077	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gagagcttgctggaacgggtCaggccgggcacaaatctggg	17	9	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	7	139299077	139299077	C	G	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.1945	p.D649H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	58	0	0	36	8	18.18	-	-	-	G	139299077	C	G	139299077	3	3	132	1	0	0	0	0	1	0	0	0	7168	826	29	2	1683	2	HIPK2	7	139299077	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	5435742	139299077	19839586	32	7845										
ABCF2	0	genome.wustl.edu	37	chr7	150916170	150916170	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cttcatgtgtgcaatctgatCttgctcccagtgaaacctct	7	12	4	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	7	150916170	150916170	C	G	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	missense	c.997	p.D333H	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	48	0	0	35	8	18.6	-	-	-	G	150916170	C	G	150916170	3	3	132	1	0	0	0	0	1	0	0	0	66	913	32	2	947	2	ABCF2	7	150916170	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	11617093	150916170	8222493	33	7846										
CHD7	0	genome.wustl.edu	37	chr8	61765855	61765855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aggagaaatgtgagggcaaaGaagaggaagaagaaaccgat	15	3	0	6			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	8	61765855	61765855	G	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.6571	p.E2191Q	0.990	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	22	0	0	16	4	20	-	-	-	C	61765855	G	C	61765855	3	2	132	1	0	0	0	0	1	0	0	0	3359	943	33	2	6689	2	CHD7	8	61765855	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		61765855	84598167	34	7847										
GABBR2	0	genome.wustl.edu	37	chr9	101235526	101235526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cagattcttccggaggcagcGggatgagttggcttccgtgt	15	9	1	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	9	101235526	101235526	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	missense	c.901	p.R301C	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	75	0	0	33	7	17.5	-	-	-	A	101235526	G	A	101235526	3	1	132	1	0	0	0	0	1	0	0	0	6205	1116	39	1	1980	1	GABBR2	9	101235526	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		101235526	39977905	35	7848										
RGS3	0	genome.wustl.edu	37	chr9	116247927	116247927	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctgtccaagaggaggatgatCagaagcgtctcttggttact	12	8	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	9	116247927	116247927	C	T	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	nonsense	c.643	p.Q215*	0.974	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	78	0	0	50	7	12.28	-	-	-	T	116247927	C	T	116247927	4	4	132	1	0	0	0	0	0	1	0	0	13390	827	29	2	752	2	RGS3	9	116247927	Nonsense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	15012401	116247927	24965504	36	7849										
DENND1A	0	genome.wustl.edu	37	chr9	126345542	126345542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	catcatccagggccatgtttCtgactttctgcaaggagaaa	9	10	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	9	126345542	126345542	C	G	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	missense	c.677	p.R226T	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	59	0	0	29	7	19.44	-	-	-	G	126345542	C	G	126345542	3	3	132	1	0	0	0	0	1	0	0	0	4462	913	32	2	2407	2	DENND1A	9	126345542	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	10097615	126345542	14867889	37	7850										
MKI67	0	genome.wustl.edu	37	chr10	129913274	129913274	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgtccagctgtagtgcccaaTttctcaggcttgctgaggga	12	10	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	10	129913274	129913274	T	G	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.1398	p.K466N	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	64	0	0	28	5	15.15	-	-	-	G	129913274	T	G	129913274	3	3	132	1	0	0	0	0	1	0	0	0	9669	1490	52	5	8408	5	MKI67	10	129913274	Missense_Mutation	SNP	T	TCGA-A7-A26H-01A-11D-A167-09		129913274	5621473	38	7851										
MUC2	0	genome.wustl.edu	37	chr11	1093757	1093757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tccgcctgagtcctcaacccCtcagacctctcggtccacct	6	20	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	1093757	1093757	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.5576	p.P1859L	0.035	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	69	0	0	35	22	38.6	-	-	-	T	1093757	C	T	1093757	3	4	132	1	0	0	0	0	1	0	0	0	10047	681	24	4	5686	4	MUC2	11	1093757	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		1093757	133912759	39	7852										
KCNQ1	0	genome.wustl.edu	37	chr11	2591933	2591933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ccggctgccgcagcaagtacGtgggcctctgggggcggctg	18	13	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	2591933	2591933	G	A	SNP	KCNQ1	ENST00000155840	human	ensembl	69_37n	1	known	missense	c.553	p.V185M	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918	72	0	0	37	7	15.91	-	-	-	A	2591933	G	A	2591933	3	1	132	1	0	0	0	0	1	0	0	0	8136	1145	40	1	572	1	KCNQ1	11	2591933	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	1498176	2591933	132414583	40	7853										
OR51D1	0	genome.wustl.edu	37	chr11	4661647	4661647	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	actgacaccagggtcaatgtGgtttatggactcttcatcat	9	9	4	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	4661647	4661647	G	A	SNP	OR51D1	ENST00000357605	human	ensembl	69_37n	1	known	silent	c.627	p.V209	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51D1	HGNC	ENSG00000197428	171	0	0	82	22	21.15	-	-	-	A	4661647	G	A	4661647	2	1	132	1	0	0	0	0	0	0	0	1	11166	1335	47	4		4	OR51D1	11	4661647	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	2069714	4661647	130344869	41	7854										
SLC6A5	0	genome.wustl.edu	37	chr11	20636348	20636348	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	caataagacatttgtcagtgGaagtgaagagtacttcaagt	10	5	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	20636348	20636348	G	T	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	missense	c.1109	p.G370V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	61	0	0	36	11	23.4	-	-	-	T	20636348	G	T	20636348	3	4	132	1	0	0	0	0	1	0	0	0	14776	1174	41	2	1131	2	SLC6A5	11	20636348	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	15974701	20636348	114370168	42	7855										
OR5D14	0	genome.wustl.edu	37	chr11	55563055	55563055	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atgatggttttaaggaatctGagcatggagcccacctttgc	11	8	1	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	55563055	55563055	G	A	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	silent	c.24	p.L8	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	39	0	0	35	9	20.45	-	-	-	A	55563055	G	A	55563055	2	1	132	1	0	0	0	0	0	0	0	1	11228	1277	45	2		2	OR5D14	11	55563055	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	34926707	55563055	79443461	43	7856										
CTSF	0	genome.wustl.edu	37	chr11	66331579	66331579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cttctcaccccagtcagtgcCccagctgttcttgatggccc	8	17	3	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	11	66331579	66331579	C	T	SNP	CTSF	ENST00000310325	human	ensembl	69_37n	-1	known	missense	c.1360	p.G454S	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSF	HGNC	ENSG00000174080	50	0	0	30	5	14.29	-	-	-	T	66331579	C	T	66331579	3	4	132	1	0	0	0	0	1	0	0	0	4066	623	22	4	102	4	CTSF	11	66331579	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	10768524	66331579	68674937	44	7857										
TMEM117	0	genome.wustl.edu	37	chr12	44238546	44238546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctttaacttcttaatatttgCggaggacccagtttctcata	6	9	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	44238546	44238546	C	T	SNP	TMEM117	ENST00000266534	human	ensembl	69_37n	1	known	missense	c.92	p.A31V	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	93	0	0	65	16	19.75	-	-	-	T	44238546	C	T	44238546	3	4	132	1	0	0	0	0	1	0	0	0	16126	768	27	1	94	1	TMEM117	12	44238546	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		44238546	89613349	45	7858										
PCBP2	0	genome.wustl.edu	37	chr12	53854905	53854906	+	Frame_Shift_Ins	INS	-	-	T													0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atcattgagtgtgtcaaacaINSgatctgcgtggtcatgttgg							TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	53854905	53854906	-	T	INS	PCBP2	ENST00000546463	human	ensembl	69_37n	1	known	frame_shift_ins	c.482_483	p.Q161fs	1.000:1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP2	HGNC	ENSG00000197111	81	0	0	26	20	43.48	-	-	-	T	53854906	-	T	53854905	7	5	132	1	0	1	1	0	0	0	0	0	11574	188	7	0	504	0	PCBP2	12	53854905	Frame_Shift_Ins	INS	-	TCGA-A7-A26H-01A-11D-A167-09	9616359	53854905	79996990	46	7859										
MYO1A	0	genome.wustl.edu	37	chr12	57436929	57436929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgttcttagccagggcgtccCgagcatactgagcctgtggg	14	11	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	57436929	57436929	C	T	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	80	0	0	36	13	26.53	-	-	-	T	57436929	C	T	57436929	3	4	132	1	0	0	0	0	1	0	0	0	10140	652	23	1	2174	1	MYO1A	12	57436929	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	3582024	57436929	76414966	47	7860										
MDM1	0	genome.wustl.edu	37	chr12	68716927	68716927	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	taattttggttctttcactgGagataaacccttgaaatttc	6	7	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	68716927	68716927	G	C	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	missense	c.727	p.P243A	1.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	129	0	0	84	16	16	-	-	-	C	68716927	G	C	68716927	3	2	132	1	0	0	0	0	1	0	0	0	9483	1174	41	2	1457	2	MDM1	12	68716927	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	11279998	68716927	65134968	48	7861										
ATXN2	0	genome.wustl.edu	37	chr12	111923644	111923644	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gttgtgcttgaggccgaggtGaagttggggtagtagaaggc	19	4	0	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	111923644	111923644	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.2810	p.S937L	0.998	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	102	0	0	54	17	23.94	-	-	-	A	111923644	G	A	111923644	3	1	132	1	0	0	0	0	1	0	0	0	1215	1294	45	2	1167	2	ATXN2	12	111923644	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	43206717	111923644	21928251	49	7862										
HNF1A	0	genome.wustl.edu	37	chr12	121426687	121426687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aagtcctacctgcagcagcaCaacatcccacagcgggaggt	10	14	0	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	12	121426687	121426687	C	A	SNP	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	missense	c.378	p.H126Q	1.000	pfam_HNF-1_N,superfamily_Lambda_DNA-bd_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	45	0	0	24	6	20	-	-	-	A	121426687	C	A	121426687	3	1	132	1	0	0	0	0	1	0	0	0	7302	477	17	4	384	4	HNF1A	12	121426687	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	9503043	121426687	12425208	50	7863										
PDS5B	0	genome.wustl.edu	37	chr13	33315238	33315238	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cttccagggaaaaagacaacTaaactttgggttccagatga	9	8	0	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	13	33315238	33315238	T	G	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	silent	c.2427	p.T809	0.986	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	45	0	0	40	5	11.11	-	-	-	G	33315238	T	G	33315238	2	3	132	1	0	0	0	0	0	0	0	1	11765	1509	53	5		5	PDS5B	13	33315238	Silent	SNP	T	TCGA-A7-A26H-01A-11D-A167-09		33315238	81854640	51	7864										
DIAPH3	0	genome.wustl.edu	37	chr13	60545069	60545069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aaatggcaggattggtagagGaggagaattttgtcctccaa	13	5	0	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	13	60545069	60545069	G	A	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	missense	c.1876	p.P626S	0.208	superfamily_FH2_actin-bd	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	55	0	0	28	5	15.15	-	-	-	A	60545069	G	A	60545069	3	1	132	1	0	0	0	0	1	0	0	0	4556	1174	41	2	1777	2	DIAPH3	13	60545069	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	27229831	60545069	54624809	52	7865										
SLITRK1	0	genome.wustl.edu	37	chr13	84453665	84453665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgtctgtagggaattaatctCggacgcggaggagttggcat	15	6	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	13	84453665	84453665	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.1978	p.E660K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	32	0	0	19	7	26.92	-	-	-	T	84453665	C	T	84453665	3	4	132	1	0	0	0	0	1	0	0	0	14831	893	31	1	116	1	SLITRK1	13	84453665	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	23908596	84453665	30716213	53	7866										
ITGBL1	0	genome.wustl.edu	37	chr13	102250555	102250555	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgcaaagcaggctggtatggGaagaagtgtgagcacccaca	14	8	0	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	13	102250555	102250555	G	A	SNP	ITGBL1	ENST00000376180	human	ensembl	69_37n	1	known	silent	c.921	p.G307	0.999	pfam_EGF_extracell,smart_EGF-like	pfam_EGF_extracell,smart_EGF-like	-	no_errors	ITGBL1	HGNC	ENSG00000198542	59	0	0	30	6	16.67	-	-	-	A	102250555	G	A	102250555	2	1	132	1	0	0	0	0	0	0	0	1	7956	1161	41	2		2	ITGBL1	13	102250555	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	17796890	102250555	12919323	54	7867										
MNAT1	0	genome.wustl.edu	37	chr14	61434964	61434964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	taggtatttaaaccatgtcaGagctgcctcaccacaggacc	8	12	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	14	61434964	61434964	G	C	SNP	MNAT1	ENST00000261245	human	ensembl	69_37n	1	known	missense	c.827	p.R276T	1.000	pirsf_MAT1_metazoa,tigrfam_MAT1	pirsf_MAT1_metazoa,pfam_Cdk-activating_kinase_MAT1_cen,smart_Znf_RING,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING,tigrfam_MAT1	-	no_errors	MNAT1	HGNC	ENSG00000020426	65	0	0	38	12	24	-	-	-	C	61434964	G	C	61434964	3	2	132	1	0	0	0	0	1	0	0	0	9746	942	33	2	857	2	MNAT1	14	61434964	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		61434964	45914576	55	7868										
PPP1R13B	0	genome.wustl.edu	37	chr14	104263855	104263855	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	caagaaaacagttaatatcaTctgtaagacaaaagagtaaa	6	5	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	14	104263855	104263855	T	A	SNP	PPP1R13B	ENST00000202556	human	ensembl	69_37n	-1	known	missense	c.10	p.M4L	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	53	0	0	24	8	25	-	-	-	A	104263855	T	A	104263855	3	1	132	1	0	0	0	0	1	0	0	0	12434	1449	50	5	3326	5	PPP1R13B	14	104263855	Missense_Mutation	SNP	T	TCGA-A7-A26H-01A-11D-A167-09	42828891	104263855	3085685	56	7869										
CACNA1H	0	genome.wustl.edu	37	chr16	1254329	1254329	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gccccgggcgagccaggctgGatgggccgcctctgggttac	17	14	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	16	1254329	1254329	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	nonsense	c.2322	p.W774*	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	12	0	0	7	7	50	-	-	-	A	1254329	G	A	1254329	4	1	132	1	0	0	0	0	0	1	0	0	2570	1183	41	2	2356	2	CACNA1H	16	1254329	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		1254329	89100424	57	7870										
ADCY9	0	genome.wustl.edu	37	chr16	4015842	4015842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tctattcctgtttcgtcacaGtcgtctttctctatggcttt	6	11	4	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	16	4015842	4015842	G	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.3996	p.D1332E	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	133	0	0	89	25	21.93	-	-	-	T	4015842	G	T	4015842	3	4	132	1	0	0	0	0	1	0	0	0	301	1020	36	4	69	4	ADCY9	16	4015842	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	2761513	4015842	86338911	58	7871										
POLR3E	0	genome.wustl.edu	37	chr16	22337485	22337485	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctgagcgaactcaagcgcctCttcaatctgcacttggccag	9	14	4	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	16	22337485	22337485	C	T	SNP	POLR3E	ENST00000299853	human	ensembl	69_37n	1	known	silent	c.1752	p.L584	1.000	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	20	0	0	15	6	28.57	-	-	-	T	22337485	C	T	22337485	2	4	132	1	0	0	0	0	0	0	0	1	12306	900	32	2		2	POLR3E	16	22337485	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	18321643	22337485	68017268	59	7872										
RBBP6	0	genome.wustl.edu	37	chr16	24579150	24579150	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	agctagatgagtttacaaatGattttgctaaggaattgatg	10	3	0	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	16	24579150	24579150	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.1990	p.D664N	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	46	0	0	41	9	18	-	-	-	A	24579150	G	A	24579150	3	1	132	1	0	0	0	0	1	0	0	0	13186	1290	45	2	2106	2	RBBP6	16	24579150	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	2241665	24579150	65775603	60	7873										
KRBA2	0	genome.wustl.edu	37	chr17	8272527	8272527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ggagtgggatccatgtcatcGtccatatcagatctgtctgc	11	10	4	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	8272527	8272527	G	A	SNP	KRBA2	ENST00000331336	human	ensembl	69_37n	-1	known	silent	c.1404	p.D468	0.000	NULL	pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core	-	no_errors	KRBA2	HGNC	ENSG00000184619	73	0	0	26	9	25.71	-	-	-	A	8272527	G	A	8272527	2	1	132	1	0	0	0	0	0	0	0	1	8493	1136	40	1		1	KRBA2	17	8272527	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		8272527	72922683	61	7874										
MAP2K4	0	genome.wustl.edu	37	chr17	12044531	12044531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atgctatgtttgtaaaatccTggatcaaatgccagctactc	7	9	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	12044531	12044531	T	C	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.1187	p.L396P	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	77	0	0	16	19	54.29	-	-	-	C	12044531	T	C	12044531	3	2	132	1	0	0	0	0	1	0	0	0	9310	1580	55	5	1196	5	MAP2K4	17	12044531	Missense_Mutation	SNP	T	TCGA-A7-A26H-01A-11D-A167-09	3772004	12044531	69150679	62	7875										
TAOK1	0	genome.wustl.edu	37	chr17	27818872	27818872	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aagatcgacctacatcagagGaacttttaaaggtcagttct	8	8	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	27818872	27818872	G	T	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	nonsense	c.820	p.E274*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	52	0	0	44	12	21.43	-	-	-	T	27818872	G	T	27818872	4	4	132	1	0	0	0	0	0	1	0	0	15639	1175	41	2	854	2	TAOK1	17	27818872	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	15774341	27818872	53376338	63	7876										
NF1	0	genome.wustl.edu	37	chr17	29556189	29556189	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcccttgggggagtgtgcctCcagcagagaagcaattctgg	15	10	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	29556189	29556189	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	silent	c.2556	p.L852	0.979	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	30	0	0	24	6	20	-	-	-	T	29556189	C	T	29556189	2	4	132	1	0	0	0	0	0	0	0	1	10428	842	30	2		2	NF1	17	29556189	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1737317	29556189	51639021	64	7877										
MAP2K6	0	genome.wustl.edu	37	chr17	67537883	67537883	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	catcttttgtaaaactgattCttggagactaaaaagcagtg	8	6	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	67537883	67537883	C	A	SNP	MAP2K6	ENST00000590474	human	ensembl	69_37n	1	known	missense	c.994	p.L332I	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K6	HGNC	ENSG00000108984	56	0	0	22	26	54.17	-	-	-	A	67537883	C	A	67537883	3	1	132	1	0	0	0	0	1	0	0	0	9312	913	32	2	1040	2	MAP2K6	17	67537883	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	37981694	67537883	13657327	65	7878										
KIAA0195	0	genome.wustl.edu	37	chr17	73489641	73489641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctgcacagacttctgggacgGagctgacatctaccctctct	9	14	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	17	73489641	73489641	G	T	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.2156	p.G719V	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	48	0	0	19	6	24	-	-	-	T	73489641	G	T	73489641	3	4	132	1	0	0	0	0	1	0	0	0	8212	1174	41	2	2218	2	KIAA0195	17	73489641	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	5951758	73489641	7705569	66	7879										
WDR7	0	genome.wustl.edu	37	chr18	54354174	54354174	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ttgtgcatttacacaaaggtCacttttggttgtgtgttcca	9	7	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	18	54354174	54354174	C	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	missense	c.686	p.S229L	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	77	0	0	49	9	15.52	-	-	-	T	54354174	C	T	54354174	3	4	132	1	0	0	0	0	1	0	0	0	17417	838	29	2	708	2	WDR7	18	54354174	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		54354174	23723074	67	7880										
GPX4	0	genome.wustl.edu	37	chr19	1106407	1106407	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gtctctccacagttcctcatCgacaagaacggctgcgtggt	10	13	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	1106407	1106407	C	T	SNP	GPX4	ENST00000593032	human	ensembl	69_37n	1	novel	nonsense	c.547	p.R183*	0.669	NULL	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon	GPX4	HGNC	ENSG00000167468	29	0	0	11	6	35.29	-	-	-	T	1106407	C	T	1106407	4	4	132	1	0	0	0	0	0	1	0	0	6793	876	31	1	753	1	GPX4	19	1106407	Nonsense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		1106407	58022576	68	7881										
FBXW9	0	genome.wustl.edu	37	chr19	12800969	12800969	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gagggatatcagagcccctcGaaggccccccccagcccatg	11	17	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	12800969	12800969	G	C	SNP	FBXW9	ENST00000380339	human	ensembl	69_37n	-1	known	missense	c.929	p.S310W	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004	29	0	0	17	6	26.09	-	-	-	C	12800969	G	C	12800969	3	2	132	1	0	0	0	0	1	0	0	0	5817	1073	37	3		3	FBXW9	19	12800969	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	11694562	12800969	46328014	69	7882										
CACNA1A	0	genome.wustl.edu	37	chr19	13387897	13387897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	actcaccttgatcaccatctCaaaggtaaagacgcctgtaa	6	12	3	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	13387897	13387897	C	G	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.3868	p.E1290Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	62	0	0	46	14	23.33	-	-	-	G	13387897	C	G	13387897	3	3	132	1	0	0	0	0	1	0	0	0	2563	835	29	2	3854	2	CACNA1A	19	13387897	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	586928	13387897	45741086	70	7883										
BRD4	0	genome.wustl.edu	37	chr19	15366988	15366988	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	cttttgtgcttttcttttttCttttccttcttgtctttctc	3	10	5	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	15366988	15366988	C	G	SNP	BRD4	ENST00000263377	human	ensembl	69_37n	-1	known	missense	c.1638	p.K546N	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867	212	0	0	142	27	15.98	-	-	-	G	15366988	C	G	15366988	3	3	132	1	0	0	0	0	1	0	0	0	1512	912	32	2	2513	2	BRD4	19	15366988	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1979091	15366988	43761995	71	7884										
ZNF792	0	genome.wustl.edu	37	chr19	35450195	35450195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcctggccctcctccgttctGatagggttgtgtacgttctg	12	12	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	35450195	35450195	G	C	SNP	ZNF792	ENST00000404801	human	ensembl	69_37n	-1	known	missense	c.564	p.I188M	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	33	0	0	26	7	21.21	-	-	-	C	35450195	G	C	35450195	3	2	132	1	0	0	0	0	1	0	0	0	18257	1280	45	2	1338	2	ZNF792	19	35450195	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	20083207	35450195	23678788	72	7885										
ZNF461	0	genome.wustl.edu	37	chr19	37129791	37129791	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	agtatgaattctttgatgttGaataaggtgtgaatgaagtc	11	2	1	5			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	37129791	37129791	G	A	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	nonsense	c.1456	p.Q486*	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	48	0	0	44	7	13.73	-	-	-	A	37129791	G	A	37129791	4	1	132	1	0	0	0	0	0	1	0	0	18021	1299	45	2	239	2	ZNF461	19	37129791	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	1679596	37129791	21999192	73	7886			1	12		4	4	589	G		9.729282e-10
ZNF461	0	genome.wustl.edu	37	chr19	37129879	37129879	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgaattctctgatgtcttttGaggtgtgaacactgtctaaa	9	6	3	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	37129879	37129879	G	C	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	silent	c.1368	p.L456	0.063	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	51	0	0	34	6	15	-	-	-	C	37129879	G	C	37129879	2	2	132	1	0	0	0	0	0	0	0	1	18021	1277	45	2		2	ZNF461	19	37129879	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	88	37129879	21999104	74	7887			1	12		4	4	589	G		9.729282e-10
ZNF461	0	genome.wustl.edu	37	chr19	37130138	37130138	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tctgatgtatagtaagatgtGagcgatgcctaaaagtcttt	10	5	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	37130138	37130138	G	C	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	nonsense	c.1109	p.S370*	0.014	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	58	0	0	42	9	17.65	-	-	-	C	37130138	G	C	37130138	4	2	132	1	0	0	0	0	0	1	0	0	18021	1294	45	2	586	2	ZNF461	19	37130138	Nonsense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	259	37130138	21998845	75	7888			1	12		4	4	589	G		9.729282e-10
ZNF461	0	genome.wustl.edu	37	chr19	37130379	37130379	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	agtgtgaattctttgatgtaGagtaagttctgagccataat	10	4	2	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	37130379	37130379	G	C	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	missense	c.868	p.L290V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	72	0	0	43	9	17.31	-	-	-	C	37130379	G	C	37130379	3	2	132	1	0	0	0	0	1	0	0	0	18021	933	33	2	827	2	ZNF461	19	37130379	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	241	37130379	21998604	76	7889			1	12		4	4	589	G		9.729282e-10
ZNF701	0	genome.wustl.edu	37	chr19	53086613	53086613	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tcatcgtagacttcatactgGagagaaaccttacaagtgta	8	8	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	53086613	53086613	G	C	SNP	ZNF701	ENST00000301093	human	ensembl	69_37n	1	known	missense	c.1499	p.G500A	0.889	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	52	0	0	26	11	29.73	-	-	-	C	53086613	G	C	53086613	3	2	132	1	0	0	0	0	1	0	0	0	18201	1174	41	2	1513	2	ZNF701	19	53086613	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	15956234	53086613	6042370	77	7890										
OSCAR	0	genome.wustl.edu	37	chr19	54598516	54598516	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ataccagcaggagcgcggttCtgactgcgccagtcaaaagt	12	11	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	54598516	54598516	C	G	SNP	OSCAR	ENST00000356532	human	ensembl	69_37n	-1	known	missense	c.774	p.Q258H	0.004	NULL	smart_Ig_sub	-	no_errors	OSCAR	HGNC	ENSG00000170909	31	0	0	17	4	19.05	-	-	-	G	54598516	C	G	54598516	3	3	132	1	0	0	0	0	1	0	0	0	11358	912	32	2	33	2	OSCAR	19	54598516	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1511903	54598516	4530467	78	7891										
LILRB2	0	genome.wustl.edu	37	chr19	54780306	54780306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgttggaaatcagcctttctCtgggctgggggaagaaggac	15	7	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	54780306	54780306	C	T	SNP	LILRB2	ENST00000455108	human	ensembl	69_37n	-1	known	missense	c.515	p.R172K	0.004	NULL	smart_Ig_sub	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LILRB2	HGNC	ENSG00000131042	35	0	0	23	8	25.81	-	-	-	T	54780306	C	T	54780306	3	4	132	1	0	0	0	0	1	0	0	0	8846	912	32	2	324	2	LILRB2	19	54780306	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	181790	54780306	4348677	79	7892										
NLRP7	0	genome.wustl.edu	37	chr19	55451233	55451233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	aggaagccctccacccttacGtagatcggctgctgcgccag	11	15	0	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	19	55451233	55451233	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	silent	c.1038	p.Y346	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	30	0	0	23	4	14.81	-	-	-	A	55451233	G	A	55451233	2	1	132	1	0	0	0	0	0	0	0	1	10554	1140	40	1		1	NLRP7	19	55451233	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	670927	55451233	3677750	80	7893										
PCIF1	0	genome.wustl.edu	37	chr20	44574946	44574946	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ggcgtcagcttcgagtgcttCgcctcacccctcaactgcta	9	16	3	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	20	44574946	44574946	C	T	SNP	PCIF1	ENST00000372409	human	ensembl	69_37n	1	known	silent	c.1536	p.F512	0.897	pfam_PCIF1_WW	pfam_PCIF1_WW,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	PCIF1	HGNC	ENSG00000100982	52	0	0	33	8	19.51	-	-	-	T	44574946	C	T	44574946	2	4	132	1	0	0	0	0	0	0	0	1	11653	883	31	1		1	PCIF1	20	44574946	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		44574946	18450574	81	7894										
PCIF1	0	genome.wustl.edu	37	chr20	44576059	44576059	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gcatgagtaccgcagtggctCccagcacatctgcaagaagt	11	12	1	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	20	44576059	44576059	C	G	SNP	PCIF1	ENST00000372409	human	ensembl	69_37n	1	known	missense	c.1865	p.S622C	1.000	NULL	pfam_PCIF1_WW,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	PCIF1	HGNC	ENSG00000100982	22	0	0	25	11	30.56	-	-	-	G	44576059	C	G	44576059	3	3	132	1	0	0	0	0	1	0	0	0	11653	855	30	2	1919	2	PCIF1	20	44576059	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1113	44576059	18449461	82	7895										
NCOA3	0	genome.wustl.edu	37	chr20	46271054	46271054	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tattggaccagctgcacactCttctcagcaacacagatgcc	7	14	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	20	46271054	46271054	C	T	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.3178	p.L1060F	0.691	pfam_Nuc_rcpt_coact_Ncoa-typ,superfamily_Nuc_rcpt_coact,pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	85	0	0	56	9	13.85	-	-	-	T	46271054	C	T	46271054	3	4	132	1	0	0	0	0	1	0	0	0	10302	913	32	2	3266	2	NCOA3	20	46271054	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1694995	46271054	16754466	83	7896										
B4GALT5	0	genome.wustl.edu	37	chr20	48260137	48260137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgggtctttggagaagagttCatgaatgtaatccattccaa	10	6	2	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	20	48260137	48260137	C	G	SNP	B4GALT5	ENST00000371711	human	ensembl	69_37n	-1	known	missense	c.415	p.E139Q	0.918	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT5	HGNC	ENSG00000158470	117	0	0	68	15	18.07	-	-	-	G	48260137	C	G	48260137	3	3	132	1	0	0	0	0	1	0	0	0	1278	835	29	2	775	2	B4GALT5	20	48260137	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	1989083	48260137	14765383	84	7897										
COL6A1	0	genome.wustl.edu	37	chr21	47402592	47402592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tgctggacacctctgagagcGtggccctgaggctgaagccc	14	13	1	3			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	21	47402592	47402592	G	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	1	known	missense	c.142	p.V48L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	27	0	0	8	11	57.89	-	-	-	T	47402592	G	T	47402592	3	4	132	1	0	0	0	0	1	0	0	0	3729	1145	40	3	148	3	COL6A1	21	47402592	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		47402592	727303	85	7898										
LGALS1	0	genome.wustl.edu	37	chr22	38073045	38073045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	tggagagtgccttcgagtgcGaggcgaggtggctcctgacg	18	9	0	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	22	38073045	38073045	G	A	SNP	LGALS1	ENST00000215909	human	ensembl	69_37n	1	known	missense	c.62	p.R21Q	0.567	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS1	HGNC	ENSG00000100097	52	0	0	23	8	25.81	-	-	-	A	38073045	G	A	38073045	3	1	132	1	0	0	0	0	1	0	0	0	8792	1058	37	1	68	1	LGALS1	22	38073045	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09		38073045	13231521	86	7899										
TNRC6B	0	genome.wustl.edu	37	chr22	40704525	40704525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctcctttttaggcttcagctCtggcggcatggactatggca	11	11	2	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	22	40704525	40704525	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.4130	p.S1377F	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	82	0	0	53	10	15.87	-	-	-	T	40704525	C	T	40704525	3	4	132	1	0	0	0	0	1	0	0	0	16436	913	32	2	4313	2	TNRC6B	22	40704525	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	2631480	40704525	10600041	87	7900										
KAL1	0	genome.wustl.edu	37	chrX	8553307	8553307	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gggaagaaaaggaagactgaCctttggaagaacggaagtgt	15	4	0	4			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	8553307	8553307	C	A	SNP	KAL1	ENST00000262648	human	ensembl	69_37n	-1	known	splice_site	c.856+1	e6+1	1.000	-	-	-	no_errors	KAL1	HGNC	ENSG00000011201	51	0	0	26	10	27.78	-	-	-	A	8553307	C	A	8553307	5	1	132	1	0	0	0	0	0	0	1	0	8028	521	18	4	1221	4	KAL1	23	8553307	Splice_Site	SNP	C	TCGA-A7-A26H-01A-11D-A167-09		8553307	146717253	88	7901										
SCML1	0	genome.wustl.edu	37	chrX	17768235	17768235	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	ctggaggaggacccgatcctCagccgcactccgagtccagt	12	15	1	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	17768235	17768235	C	T	SNP	SCML1	ENST00000380041	human	ensembl	69_37n	1	known	silent	c.525	p.L175	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634	45	0	0	25	5	16.67	-	-	-	T	17768235	C	T	17768235	2	4	132	1	0	0	0	0	0	0	0	1	13997	813	29	2		2	SCML1	23	17768235	Silent	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	9214928	17768235	137502325	89	7902										
TSPYL2	0	genome.wustl.edu	37	chrX	53114174	53114174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	caaccccaatccgctggcacCggggccaggaaccccaggcc	11	19	0	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	53114174	53114174	C	T	SNP	TSPYL2	ENST00000375442	human	ensembl	69_37n	1	known	missense	c.1036	p.R346W	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	25	0	0	13	4	23.53	-	-	-	T	53114174	C	T	53114174	3	4	132	1	0	0	0	0	1	0	0	0	16756	643	23	1	1050	1	TSPYL2	23	53114174	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	35345939	53114174	102156386	90	7903										
PGK1	0	genome.wustl.edu	37	chrX	77369391	77369391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gtagaactcaaatctctgctGggcaagtaagtgccaggctc	11	10	2	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	77369391	77369391	G	A	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	silent	c.267	p.L89	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	56	0	0	36	4	10	-	-	-	A	77369391	G	A	77369391	2	1	132	1	0	0	0	0	0	0	0	1	11864	1335	47	4		4	PGK1	23	77369391	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	24255217	77369391	77901169	91	7904										
ALG13	0	genome.wustl.edu	37	chrX	110970673	110970673	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	taacttctcttatagatctcGgtaagtattgtgttgaaagt	8	5	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	110970673	110970673	G	T	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	missense	c.1778	p.R593L	1.000	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	31	0	0	28	10	26.32	-	-	-	T	110970673	G	T	110970673	3	4	132	1	0	0	0	0	1	0	0	0	515	1130	39	3	2298	3	ALG13	23	110970673	Missense_Mutation	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	33601282	110970673	44299887	92	7905										
SMARCA1	0	genome.wustl.edu	37	chrX	128602783	128602783	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gacctcctcaggggatttgcCctctacctctcgagctatgt	9	14	3	0			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	128602783	128602783	C	A	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.2665	p.G889C	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	79	0	0	45	10	18.18	-	-	-	A	128602783	C	A	128602783	3	1	132	1	0	0	0	0	1	0	0	0	14857	623	22	4	515	4	SMARCA1	23	128602783	Missense_Mutation	SNP	C	TCGA-A7-A26H-01A-11D-A167-09	17632110	128602783	26667777	93	7906										
L1CAM	0	genome.wustl.edu	37	chrX	153129444	153129444	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	atgaaccagccctcagtggcGaagccagcaggagggagcct	14	12	1	1			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	153129444	153129444	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	silent	c.3357	p.F1119	0.915	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	48	0	0	20	10	33.33	-	-	-	A	153129444	G	A	153129444	2	1	132	1	0	0	0	0	0	0	0	1	8642	1049	37	1		1	L1CAM	23	153129444	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	24526661	153129444	2141116	94	7907										
ATP6AP1	0	genome.wustl.edu	37	chrX	153662003	153662003	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	40	1.28255974565494e-12	3.45539906103286	4.53333333333333	2.93888888888889	0.284393200724413	0.930327025915261	28	gaggtcatcgggcaggtcctGagcacactcaagtccgaaga	13	11	2	2			TCGA-A7-A26H-01A-11D-A167-09	TCGA-A7-A26H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbeade79-28ef-4e85-8282-67e691630ca3	73459869-08fc-408a-bdf0-6ca346113171	X	153662003	153662003	G	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	69_37n	1	known	silent	c.621	p.L207	1.000	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	54	0	0	24	5	17.24	-	-	-	A	153662003	G	A	153662003	2	1	132	1	0	0	0	0	0	0	0	1	1169	1277	45	2		2	ATP6AP1	23	153662003	Silent	SNP	G	TCGA-A7-A26H-01A-11D-A167-09	532559	153662003	1608557	95	7908										
C1orf85	0	genome.wustl.edu	37	chr1	156263310	156263310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ccccggcttctgggagtaagCcactggtcgccactgtgcaa	12	14	1	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	1	156263310	156263310	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	69_37n	-1	known	missense	c.856	p.A286T	1.000	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715	33	0	0	53	14	20.9	-	-	-	T	156263310	C	T	156263310	3	4	133	1	0	0	0	0	1	0	0	0	2082	739	26	4	372	4	C1orf85	1	156263310	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		156263310	92987311	1	7909										
COPA	0	genome.wustl.edu	37	chr1	160264342	160264342	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ttcttcctgtcccttgccaaGagcatcatcccccaaacctt	4	17	2	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	1	160264342	160264342	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.2635	p.L879F	0.983	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	113	0	0	129	54	29.51	-	-	-	A	160264342	G	A	160264342	3	1	133	1	0	0	0	0	1	0	0	0	3757	942	33	2	1102	2	COPA	1	160264342	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09	4001032	160264342	88986279	2	7910										
TMEM17	0	genome.wustl.edu	37	chr2	62729608	62729608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	cccacgtagcccagatacaaCcggatggcttcaattaaggt	9	12	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	2	62729608	62729608	C	T	SNP	TMEM17	ENST00000335390	human	ensembl	69_37n	-1	known	silent	c.282	p.R94	0.968	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM17	HGNC	ENSG00000186889	79	0	0	79	13	14.13	-	-	-	T	62729608	C	T	62729608	2	4	133	1	0	0	0	0	0	0	0	1	16180	494	18	4		4	TMEM17	2	62729608	Silent	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		62729608	180469765	3	7911										
POTEF	0	genome.wustl.edu	37	chr2	130833036	130833036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	aatatttcttttctcttagcTggctctgatgtttcattgtg	7	7	4	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	2	130833036	130833036	T	C	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2009	p.Q670R	0.067	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	47	0	0	12	26	66.67	-	-	-	C	130833036	T	C	130833036	3	2	133	1	0	0	0	0	1	0	0	0	12339	1580	55	5	1222	5	POTEF	2	130833036	Missense_Mutation	SNP	T	TCGA-A7-A26I-01A-11D-A167-09	68103428	130833036	112366337	4	7912										
TTN	0	genome.wustl.edu	37	chr2	179615822	179615822	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ggcatgtggattttgcacaaTactctcagctgaatgatcta	9	8	2	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	2	179615822	179615822	T	A	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.11305	p.I3769F	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	59	0	0	47	7	12.96	-	-	-	A	179615822	T	A	179615822	3	1	133	1	0	0	0	0	1	0	0	0	16832	1406	49	5	98992	5	TTN	2	179615822	Missense_Mutation	SNP	T	TCGA-A7-A26I-01A-11D-A167-09	48782786	179615822	63583551	5	7913										
PEX5L	0	genome.wustl.edu	37	chr3	179605499	179605499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ctggccttgctattgcttccGatttggtttcacagagaaag	10	9	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	3	179605499	179605499	G	A	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.272	p.S91L	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	131	0	0	79	19	19.19	-	-	-	A	179605499	G	A	179605499	3	1	133	1	0	0	0	0	1	0	0	0	11823	1059	37	1	1656	1	PEX5L	3	179605499	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		179605499	18416931	6	7914										
CHD7	0	genome.wustl.edu	37	chr8	61773610	61773610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ggctggtgggggaagatgctCctaaaaataaggatttagtt	14	4	0	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	8	61773610	61773610	C	T	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.7756	p.P2586S	0.993	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	31	0	0	46	17	26.98	-	-	-	T	61773610	C	T	61773610	3	4	133	1	0	0	0	0	1	0	0	0	3359	855	30	2	7890	2	CHD7	8	61773610	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		61773610	84590412	7	7915										
FRMD3	0	genome.wustl.edu	37	chr9	85863339	85863339	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ttttattttatcttcctcttCactagggggatcttcatact	5	9	5	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	9	85863339	85863339	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.1288	p.E430K	0.997	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	68	0	0	20	21	51.22	-	-	-	T	85863339	C	T	85863339	3	4	133	1	0	0	0	0	1	0	0	0	6099	835	29	2	509	2	FRMD3	9	85863339	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		85863339	55350092	8	7916										
ADARB2	0	genome.wustl.edu	37	chr10	1405909	1405909	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	cctcagctcgtgcagctgcaCcagcgcgttcttgggcgcca	12	16	2	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	10	1405909	1405909	C	G	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	missense	c.391	p.V131L	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	12	0	0	19	11	36.67	-	-	-	G	1405909	C	G	1405909	3	3	133	1	0	0	0	0	1	0	0	0	283	507	18	4	1860	4	ADARB2	10	1405909	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		1405909	134128838	9	7917										
DRGX	0	genome.wustl.edu	37	chr10	50594777	50594777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	tccgggcttggtccccagggGgcggggagttgatgtttctc	17	10	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	10	50594777	50594777	G	T	SNP	DRGX	ENST00000434016	human	ensembl	69_37n	-1	known	missense	c.377	p.P126H	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DRGX	HGNC	ENSG00000165606	61	0	0	64	11	14.67	-	-	-	T	50594777	G	T	50594777	3	4	133	1	0	0	0	0	1	0	0	0	4798	1232	43	4	440	4	DRGX	10	50594777	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09	49188868	50594777	84939970	10	7918										
TNKS2	0	genome.wustl.edu	37	chr10	93572900	93572900	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ggtgcagaccccaatgctcgAgataattggaattatactcc	9	10	0	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	10	93572900	93572900	A	G	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	silent	c.360	p.R120	0.884	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	83	0	0	53	7	11.67	-	-	-	G	93572900	A	G	93572900	2	3	133	1	0	0	0	0	0	0	0	1	16416	291	11	5		5	TNKS2	10	93572900	Silent	SNP	A	TCGA-A7-A26I-01A-11D-A167-09	42978123	93572900	41961847	11	7919										
C10orf2	0	genome.wustl.edu	37	chr10	102753070	102753070	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	atgtaggtgtcttcccgcttGagttcaacaagaactccctc	8	12	2	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	10	102753070	102753070	G	C	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.1858	p.E620Q	1.000	pfscan_DNA_helicase_DnaB-like_C	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	65	0	0	39	16	29.09	-	-	-	C	102753070	G	C	102753070	3	2	133	1	0	0	0	0	1	0	0	0	1607	1291	45	2	1891	2	C10orf2	10	102753070	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09	9180170	102753070	32781677	12	7920										
DMBT1	0	genome.wustl.edu	37	chr10	124351807	124351807	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ggatctgaatccagtttgacCctgaggctggtgaatggaag	14	7	1	4			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	10	124351807	124351807	C	A	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	silent	c.2196	p.T732	0.000	superfamily_Srcr_rcpt-rel	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	157	0	0	111	24	17.78	-	-	-	A	124351807	C	A	124351807	2	1	133	1	0	0	0	0	0	0	0	1	4613	610	22	4		4	DMBT1	10	124351807	Silent	SNP	C	TCGA-A7-A26I-01A-11D-A167-09	21598737	124351807	11182940	13	7921										
NELL1	0	genome.wustl.edu	37	chr11	20699549	20699549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ttgaccttgtgaacaccaccCttggagttgctcaggtgtct	10	11	2	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	11	20699549	20699549	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.127	p.L43F	0.002	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	75	0	0	41	31	43.06	-	-	-	T	20699549	C	T	20699549	3	4	133	1	0	0	0	0	1	0	0	0	10405	681	24	4	133	4	NELL1	11	20699549	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		20699549	114306967	14	7922										
FCHSD2	0	genome.wustl.edu	37	chr11	72552500	72552500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	tgcccaggagaacccttaccGtttgctgaaggagaccgggg	14	11	0	3			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	11	72552500	72552500	G	A	SNP	FCHSD2	ENST00000409418	human	ensembl	69_37n	-1	known	silent	c.2055	p.N685	0.829	NULL	pfam_SH3_domain,pfam_FCH,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	FCHSD2	HGNC	ENSG00000137478	54	0	0	26	16	38.1	-	-	-	A	72552500	G	A	72552500	2	1	133	1	0	0	0	0	0	0	0	1	5836	1159	40	1		1	FCHSD2	11	72552500	Silent	SNP	G	TCGA-A7-A26I-01A-11D-A167-09	51852951	72552500	62454016	15	7923										
ARHGAP9	0	genome.wustl.edu	37	chr12	57873203	57873203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	atagcattgtagccagcactGtcacctgtgagaaaaaggga	11	8	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	12	57873203	57873203	G	T	SNP	ARHGAP9	ENST00000393797	human	ensembl	69_37n	-1	putative	missense	c.200	p.T67K	0.280	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	11	0	0	1	8	88.89	-	-	-	T	57873203	G	T	57873203	3	4	133	1	0	0	0	0	1	0	0	0	891	1392	48	4		4	ARHGAP9	12	57873203	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		57873203	75978692	16	7924										
ALKBH2	0	genome.wustl.edu	37	chr12	109530530	109530530	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ctggctcttctccagttggcTcttgctcctcctgcttcctc	7	17	3	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	12	109530530	109530530	T	C	SNP	ALKBH2	ENST00000343075	human	ensembl	69_37n	-1	known	missense	c.62	p.E21G	0.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH2	HGNC	ENSG00000189046	125	0	0	73	20	21.51	-	-	-	C	109530530	T	C	109530530	3	2	133	1	0	0	0	0	1	0	0	0	527	1551	54	5	735	5	ALKBH2	12	109530530	Missense_Mutation	SNP	T	TCGA-A7-A26I-01A-11D-A167-09	51657327	109530530	24321365	17	7925										
CLYBL	0	genome.wustl.edu	37	chr13	100425236	100425236	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	agattgtgcagtgctcgactGtgaggatggagtggctgcaa	16	6	0	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	13	100425236	100425236	G	C	SNP	CLYBL	ENST00000339105	human	ensembl	69_37n	1	known	missense	c.221	p.C74S	1.000	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246	55	0	0	25	7	21.88	-	-	-	C	100425236	G	C	100425236	3	2	133	1	0	0	0	0	1	0	0	0	3603	1377	48	4	227	4	CLYBL	13	100425236	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		100425236	14744642	18	7926										
HERC2	0	genome.wustl.edu	37	chr15	28483866	28483866	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	ttctccaaatcagctttgcgTataagtgtcacttcctcatt	5	11	4	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	15	28483866	28483866	T	C	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.3630	p.I1210M	0.993	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	111	0	0	55	20	26.67	-	-	-	C	28483866	T	C	28483866	3	2	133	1	0	0	0	0	1	0	0	0	7109	1628	57	5	11154	5	HERC2	15	28483866	Missense_Mutation	SNP	T	TCGA-A7-A26I-01A-11D-A167-09		28483866	74047526	19	7927										
THAP10	0	genome.wustl.edu	37	chr15	71184461	71184461	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gtggtcagagcagatgaccgAgcggtcattgcctccgtacc	13	12	2	3			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	15	71184461	71184461	A	T	SNP	THAP10	ENST00000249861	human	ensembl	69_37n	-1	known	missense	c.151	p.S51T	0.275	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP10	HGNC	ENSG00000129028	21	0	0	10	8	44.44	-	-	-	T	71184461	A	T	71184461	3	4	133	1	0	0	0	0	1	0	0	0	15937	304	11	5	634	5	THAP10	15	71184461	Missense_Mutation	SNP	A	TCGA-A7-A26I-01A-11D-A167-09	42700595	71184461	31346931	20	7928										
ZNF500	0	genome.wustl.edu	37	chr16	4802807	4802807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gctggtgcttggtcaagtggGacgtcttgctgaagcctttg	15	8	2	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	16	4802807	4802807	G	A	SNP	ZNF500	ENST00000219478	human	ensembl	69_37n	-1	known	missense	c.1013	p.S338F	0.622	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF500	HGNC	ENSG00000103199	53	0	0	49	10	16.95	-	-	-	A	4802807	G	A	4802807	3	1	133	1	0	0	0	0	1	0	0	0	18044	1174	41	2	433	2	ZNF500	16	4802807	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		4802807	85551946	21	7929										
TP53	0	genome.wustl.edu	37	chr17	7577141	7577141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gcacctcaaagctgttccgtCccagtagattaccactactc	6	15	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	17	7577141	7577141	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.797	p.G266E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	26	0	0	19	23	54.76	-	-	-	T	7577141	C	T	7577141	3	4	133	1	0	0	0	0	1	0	0	0	16477	855	30	2	489	2	TP53	17	7577141	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09		7577141	73618069	22	7930										
FLOT2	0	genome.wustl.edu	37	chr17	27211282	27211282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gttaaagctaccccctcggcCgtctctacgtcctcgcagcg	9	17	1	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	17	27211282	27211282	C	A	SNP	FLOT2	ENST00000580805	human	ensembl	69_37n	-1	known	missense	c.274	p.G92C	1.000	NULL	NULL	-	no_errors	FLOT2	HGNC	ENSG00000132589	25	0	0	23	8	25.81	-	-	-	A	27211282	C	A	27211282	3	1	133	1	0	0	0	0	1	0	0	0	5983	639	23	3	1139	3	FLOT2	17	27211282	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09	19634141	27211282	53983928	23	7931										
FMNL1	0	genome.wustl.edu	37	chr17	43321319	43321319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gctatgcttcagccgcatccCgcgcctgccggagcgcatga	12	16	1	1			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	17	43321319	43321319	C	T	SNP	FMNL1	ENST00000328118	human	ensembl	69_37n	1	known	missense	c.2375	p.P792L	0.988	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL1	HGNC	ENSG00000184922	45	0	0	16	11	40.74	-	-	-	T	43321319	C	T	43321319	3	4	133	1	0	0	0	0	1	0	0	0	5997	652	23	1	2445	1	FMNL1	17	43321319	Missense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09	16110037	43321319	37873891	24	7932										
ZNF681	0	genome.wustl.edu	37	chr19	23927048	23927048	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	tcttatgttcagtaaggtttGaggattggttagaagctttg	12	3	2	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	19	23927048	23927048	G	A	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	missense	c.1304	p.S435L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	90	0	0	23	32	58.18	-	-	-	A	23927048	G	A	23927048	3	1	133	1	0	0	0	0	1	0	0	0	18184	1294	45	2	637	2	ZNF681	19	23927048	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		23927048	35201935	25	7933										
LGALS14	0	genome.wustl.edu	37	chr19	40199876	40199876	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	gcatttacaactttgcccatCgattcccgccagcatctgtg	7	14	1	0			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	19	40199876	40199876	C	T	SNP	LGALS14	ENST00000360675	human	ensembl	69_37n	1	known	nonsense	c.430	p.R144*	0.009	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659	57	0	0	89	31	25.83	-	-	-	T	40199876	C	T	40199876	4	4	133	1	0	0	0	0	0	1	0	0	8795	876	31	1	463	1	LGALS14	19	40199876	Nonsense_Mutation	SNP	C	TCGA-A7-A26I-01A-11D-A167-09	16272828	40199876	18929107	26	7934										
SOX10	0	genome.wustl.edu	37	chr22	38370136	38370136	+	Frame_Shift_Del	DEL	G	G	-													0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	tggagcgcccgtcccgcttcGggtctgccttgcccgactgc							TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	22	38370136	38370136	G	-	DEL	SOX10	ENST00000360880	human	ensembl	69_37n	-1	known	frame_shift_del	c.767	p.P256fs	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX10	HGNC	ENSG00000100146	24	0	0	12	7	36.84	-	-	-	-	38370136	G	-	38370136	7	5	133	1	0	1	0	1	0	0	0	0	15030	1116	39	0	637	0	SOX10	22	38370136	Frame_Shift_Del	DEL	G	TCGA-A7-A26I-01A-11D-A167-09		38370136	12934430	27	7935										
OCRL	0	genome.wustl.edu	37	chrX	128722977	128722977	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	tgactctgcttatgatccccGgatctgccgacaggtgggtt	12	11	2	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	X	128722977	128722977	G	C	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.2456	p.R819P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	71	0	0	38	28	42.42	-	-	-	C	128722977	G	C	128722977	3	2	133	1	0	0	0	0	1	0	0	0	10896	1116	39	3	2542	3	OCRL	23	128722977	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09		128722977	26547583	28	7936										
ZNF185	0	genome.wustl.edu	37	chrX	152128305	152128305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.52239136765282	1.675	1.884375	1.61517857142857	0.485714285714286	1	0	cggagaggcctggcaggacaGgcctggagccccaagaggtg	18	11	0	2			TCGA-A7-A26I-01A-11D-A167-09	TCGA-A7-A26I-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fff2d1-d6ed-4963-a5f6-5899cde6b359	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	X	152128305	152128305	G	A	SNP	ZNF185	ENST00000535861	human	ensembl	69_37n	1	known	missense	c.1565	p.R522K	0.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394	58	0	0	56	7	11.11	-	-	-	A	152128305	G	A	152128305	3	1	133	1	0	0	0	0	1	0	0	0	17848	1000	35	4	1779	4	ZNF185	23	152128305	Missense_Mutation	SNP	G	TCGA-A7-A26I-01A-11D-A167-09	23405328	152128305	3142255	29	7937										
TP53	0	genome.wustl.edu	37	chr17	7577141	7577141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gcacctcaaagctgttccgtCccagtagattaccactactc	6	15	1	1			TCGA-A7-A26I-01B-06D-A22N-09	TCGA-A7-A26I-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0467a2fb-339a-4bd6-b5a0-8359626bc9db	d4ad0739-04d5-4d68-a794-7fe9aa13ff38	17	7577141	7577141	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.797	p.G266E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	131	0	0	64	47	42.34	-	-	-	T	7577141	C	T	7577141	3	4	134	1	0	0	0	0	1	0	0	0	16477	855	30	2	489	2	TP53	17	7577141	Missense_Mutation	SNP	C	TCGA-A7-A26I-01B-06D-A22N-09		7577141	73618069	1	7938										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939782	12939782	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	aggagaatttggagaggcacAagactgtaattggtcagtct	13	5	2	3			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	1	12939782	12939782	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	36	0	0	39	12	23.53	-	-	-	G	12939782	A	G	12939782	2	3	135	1	0	0	0	0	0	0	0	1	12517	117	5	5		5	PRAMEF4	1	12939782	Silent	SNP	A	TCGA-A7-A26J-01A-11D-A167-09		12939782	236310839	1	7939										
OMA1	0	genome.wustl.edu	37	chr1	58946709	58946709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	ttttgaataggaagagtatcCattttctgtttcttcgtgat	8	5	2	3			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	1	58946709	58946709	C	T	SNP	OMA1	ENST00000371226	human	ensembl	69_37n	-1	known	missense	c.1503	p.M501I	0.414	NULL	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	155	0	0	29	50	63.29	-	-	-	T	58946709	C	T	58946709	3	4	135	1	0	0	0	0	1	0	0	0	10937	594	21	4	75	4	OMA1	1	58946709	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09	46006927	58946709	190303912	2	7940										
FAM72B	0	genome.wustl.edu	37	chr1	120839839	120839839	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	ccttcctgcgacgccatgtcTaccaacatttgtagtttcaa	6	13	2	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	1	120839839	120839839	T	C	SNP	FAM72B	ENST00000369390	human	ensembl	69_37n	1	known	silent	c.6	p.S2	1.000	NULL	NULL	-	no_errors	FAM72B	HGNC	ENSG00000188610	36	0	0	18	3	14.29	-	-	-	C	120839839	T	C	120839839	2	2	135	1	0	0	0	0	0	0	0	1	5660	1509	53	5		5	FAM72B	1	120839839	Silent	SNP	T	TCGA-A7-A26J-01A-11D-A167-09	61893130	120839839	128410782	3	7941										
DPP10	0	genome.wustl.edu	37	chr2	116101439	116101439	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	agattgtctttggaagacctCtttaggaaagactttgtgct	10	6	2	3			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	2	116101439	116101439	C	T	SNP	DPP10	ENST00000429914	human	ensembl	69_37n	1	known	missense	c.86	p.S29F	1.000	NULL	NULL	-	no_errors	DPP10	HGNC	ENSG00000175497	72	0	0	35	12	25.53	-	-	-	T	116101439	C	T	116101439	3	4	135	1	0	0	0	0	1	0	0	0	4762	900	32	2	403	2	DPP10	2	116101439	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09		116101439	127097934	4	7942										
COL5A2	0	genome.wustl.edu	37	chr2	189918668	189918668	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	aactaaacctcgaggaccagGttcaccctagaaagcagatt	8	11	1	2			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	2	189918668	189918668	G	C	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.2452	p.P818A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	26	0	0	9	6	40	-	-	-	C	189918668	G	C	189918668	3	2	135	1	0	0	0	0	1	0	0	0	3727	1261	44	4	2119	4	COL5A2	2	189918668	Missense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09	73817229	189918668	53280705	5	7943										
IL17RC	0	genome.wustl.edu	37	chr3	9959658	9959658	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	cgtgcctgctccgggccccgTgctggcgcctacgcacctgc	13	19	0	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	3	9959658	9959658	T	G	SNP	IL17RC	ENST00000295981	human	ensembl	69_37n	1	known	missense	c.392	p.V131G	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702	41	0	0	13	11	45.83	-	-	-	G	9959658	T	G	9959658	3	3	135	1	0	0	0	0	1	0	0	0	7695	1696	59	5	402	5	IL17RC	3	9959658	Missense_Mutation	SNP	T	TCGA-A7-A26J-01A-11D-A167-09		9959658	188062772	6	7944										
FLNB	0	genome.wustl.edu	37	chr3	58084492	58084492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	agatccccaggggaagaacaCcgtggagttgctcgtggaag	15	9	0	2			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	3	58084492	58084492	C	A	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.1202	p.T401N	0.059	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	125	1	0.79	53	7	11.67	-	-	-	A	58084492	C	A	58084492	3	1	135	1	0	0	0	0	1	0	0	0	5980	507	18	4	1232	4	FLNB	3	58084492	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09	48124834	58084492	139937938	7	7945										
ROBO2	0	genome.wustl.edu	37	chr3	77611806	77611806	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	cttctgtgcacactagatttCtgatactggcacttatactt	6	10	2	2			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	3	77611806	77611806	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1442	p.S481F	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	109	0	0	37	27	42.19	-	-	-	T	77611806	C	T	77611806	3	4	135	1	0	0	0	0	1	0	0	0	13600	913	32	2	1482	2	ROBO2	3	77611806	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09	19527314	77611806	120410624	8	7946										
PCDH1	0	genome.wustl.edu	37	chr5	141244045	141244045	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	ttctccatcactgagaagttGtagccactcagcataaattt	6	10	3	1			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	5	141244045	141244045	G	T	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	nonsense	c.1851	p.Y617*	1.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	47	0	0	30	6	16.67	-	-	-	T	141244045	G	T	141244045	4	4	135	1	0	0	0	0	0	1	0	0	11579	1372	48	4	1958	4	PCDH1	5	141244045	Nonsense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09		141244045	39671215	9	7947										
HIST1H3G	0	genome.wustl.edu	37	chr6	26271575	26271575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	gcttgcgcggcgctttgccaCcggtggacttgcgtgcagtc	15	13	0	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	6	26271575	26271575	C	T	SNP	HIST1H3G	ENST00000305910	human	ensembl	69_37n	-1	known	missense	c.38	p.G13D	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	21	0	0	10	8	44.44	-	-	-	T	26271575	C	T	26271575	3	4	135	1	0	0	0	0	1	0	0	0	7212	507	18	4	376	4	HIST1H3G	6	26271575	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09		26271575	144843492	10	7948										
NR6A1	0	genome.wustl.edu	37	chr9	127285049	127285049	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	aaagaggaggggcagctgctCcaggggcacattcaccatct	13	11	2	1			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	9	127285049	127285049	C	A	SNP	NR6A1	ENST00000487099	human	ensembl	69_37n	-1	known	nonsense	c.1378	p.E460*	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	29	0	0	9	4	30.77	-	-	-	A	127285049	C	A	127285049	4	1	135	1	0	0	0	0	0	1	0	0	10710	864	30	2	68	2	NR6A1	9	127285049	Nonsense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09		127285049	13928382	11	7949										
PRKCQ	0	genome.wustl.edu	37	chr10	6528089	6528089	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	ctttgtctggcatctatgatGcacattcatgccacatgctg	8	11	3	1			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	10	6528089	6528089	G	T	SNP	PRKCQ	ENST00000397178	human	ensembl	69_37n	-1	known	nonsense	c.126	p.C42*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKCQ	HGNC	ENSG00000065675	45	0	0	8	6	42.86	-	-	-	T	6528089	G	T	6528089	4	4	135	1	0	0	0	0	0	1	0	0	12596	1319	46	4	1352	4	PRKCQ	10	6528089	Nonsense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09		6528089	129006658	12	7950										
PTPRE	0	genome.wustl.edu	37	chr10	129845722	129845722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	tgccgctgctgctcctcctcCtcgtgctccttctcgccgcc	8	21	1	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	10	129845722	129845722	C	T	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	missense	c.178	p.L60F	0.226	pirsf_Tyr_Pase_rcpt_a/e-type	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	28	0	0	7	4	36.36	-	-	-	T	129845722	C	T	129845722	3	4	135	1	0	0	0	0	1	0	0	0	12883	681	24	4	184	4	PTPRE	10	129845722	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09	123317633	129845722	5689025	13	7951										
MS4A2	0	genome.wustl.edu	37	chr11	59861502	59861502	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	agtgctgtgtcactcacaatCtgtggagctggggaagaact	13	8	3	1			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	11	59861502	59861502	C	T	SNP	MS4A2	ENST00000278888	human	ensembl	69_37n	1	known	silent	c.603	p.I201	0.001	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	42	0	0	36	29	44.62	-	-	-	T	59861502	C	T	59861502	2	4	135	1	0	0	0	0	0	0	0	1	9932	903	32	2		2	MS4A2	11	59861502	Silent	SNP	C	TCGA-A7-A26J-01A-11D-A167-09		59861502	75145014	14	7952										
CPNE8	0	genome.wustl.edu	37	chr12	39079360	39079360	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	tgtacagatttcagactcctGtaataagcctccatgacccc	6	13	1	3			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	12	39079360	39079360	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	nonsense	c.1203	p.Y401*	1.000	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	81	0	0	57	8	12.31	-	-	-	T	39079360	G	T	39079360	4	4	135	1	0	0	0	0	0	1	0	0	3848	1372	48	4	511	4	CPNE8	12	39079360	Nonsense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09		39079360	94772535	15	7953										
DLST	0	genome.wustl.edu	37	chr14	75352289	75352289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	agttattttgtttcttgcagGggtctccttatgccagggac	11	8	2	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	14	75352289	75352289	G	T	SNP	DLST	ENST00000334220	human	ensembl	69_37n	1	known	missense	c.98	p.G33V	1.000	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	-	no_errors	DLST	HGNC	ENSG00000119689	64	0	0	34	25	42.37	-	-	-	T	75352289	G	T	75352289	3	4	135	1	0	0	0	0	1	0	0	0	4605	1246	43	4	108	4	DLST	14	75352289	Missense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09		75352289	31997251	16	7954										
TOX2	0	genome.wustl.edu	37	chr20	42683025	42683025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	aagaaggaccccaatgagccGcagaagcctgtgtcggccta	12	12	0	3			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	20	42683025	42683025	G	A	SNP	TOX2	ENST00000413823	human	ensembl	69_37n	1	known	missense	c.35	p.R12H	0.649	NULL	NULL	-	no_start_codon	TOX2	HGNC	ENSG00000124191	42	0	0	29	17	36.96	-	-	-	A	42683025	G	A	42683025	3	1	135	1	0	0	0	0	1	0	0	0	16474	1074	38	1	886	1	TOX2	20	42683025	Missense_Mutation	SNP	G	TCGA-A7-A26J-01A-11D-A167-09		42683025	20342495	17	7955										
PTGIS	0	genome.wustl.edu	37	chr20	48124536	48124536	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	cgtacctgctgaggtcaaacTcagggatctccacatctgcg	10	13	4	1			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	20	48124536	48124536	T	G	SNP	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	missense	c.1424	p.E475A	0.015	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	51	0	0	6	12	66.67	-	-	-	G	48124536	T	G	48124536	3	3	135	1	0	0	0	0	1	0	0	0	12833	1551	54	5	82	5	PTGIS	20	48124536	Missense_Mutation	SNP	T	TCGA-A7-A26J-01A-11D-A167-09	5441511	48124536	14900984	18	7956										
DEPDC5	0	genome.wustl.edu	37	chr22	32293469	32293469	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	tttctgtactttccgccaggTccaaggttggcatcggaaag	11	10	1	0			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	22	32293469	32293469	T	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.4139	p.V1380D	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	54	0	0	12	12	50	-	-	-	A	32293469	T	A	32293469	3	1	135	1	0	0	0	0	1	0	0	0	4478	1681	58	5	4350	5	DEPDC5	22	32293469	Missense_Mutation	SNP	T	TCGA-A7-A26J-01A-11D-A167-09		32293469	19011097	19	7957										
USP9X	0	genome.wustl.edu	37	chrX	41082490	41082490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.387013341630276	2.25268817204301	0	2.8963133640553	0.1	0.5224358974359	0	gtgtggcagagaagacacagCttctgaaattgagtgtacct	12	7	1	4			TCGA-A7-A26J-01A-11D-A167-09	TCGA-A7-A26J-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be2ca34f-5c15-4b38-a207-52df296a98ee	7e2e9858-0372-46bf-b46d-0f83d9ea87f6	X	41082490	41082490	C	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.6586	p.L2196V	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	98	0	0	57	14	19.72	-	-	-	G	41082490	C	G	41082490	3	3	135	1	0	0	0	0	1	0	0	0	17187	797	28	4	6736	4	USP9X	23	41082490	Missense_Mutation	SNP	C	TCGA-A7-A26J-01A-11D-A167-09		41082490	114188070	20	7958										
LUZP1	0	genome.wustl.edu	37	chr1	23418607	23418607	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gctctgacagatttcacagaTtcattctccattccagcatc	5	13	4	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	23418607	23418607	T	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	silent	c.2148	p.E716	0.050	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	47	0	0	55	18	24.66	-	-	-	C	23418607	T	C	23418607	2	2	136	1	0	0	0	0	0	0	0	1	9152	1490	52	5		5	LUZP1	1	23418607	Silent	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09		23418607	225832014	1	7959										
SLC44A5	0	genome.wustl.edu	37	chr1	75685020	75685020	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tatacaggtacccccgatgtCgccaagaaactgaataaact	7	11	0	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	75685020	75685020	C	T	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	silent	c.1188	p.A396	0.993	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	37	0	0	76	11	12.64	-	-	-	T	75685020	C	T	75685020	2	4	136	1	0	0	0	0	0	0	0	1	14728	871	31	1		1	SLC44A5	1	75685020	Silent	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	52266413	75685020	173565601	2	7960										
ARHGAP29	0	genome.wustl.edu	37	chr1	94668512	94668512	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tttccaaagctcttttatttCtttcctttgtttttccattt	2	9	2	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	94668512	94668512	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	nonsense	c.916	p.E306*	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	52	0	0	57	20	25.97	-	-	-	A	94668512	C	A	94668512	4	1	136	1	0	0	0	0	0	1	0	0	880	922	32	2	2925	2	ARHGAP29	1	94668512	Nonsense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	18983492	94668512	154582109	3	7961										
RPRD2	0	genome.wustl.edu	37	chr1	150444409	150444409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cccacgtcaggcgtggagaaAgtcctggcctccaccatttc	10	15	1	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	150444409	150444409	A	G	SNP	RPRD2	ENST00000539519	human	ensembl	69_37n	1	known	missense	c.2767	p.S923G	0.994	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	23	0	0	59	11	15.71	-	-	-	G	150444409	A	G	150444409	3	3	136	1	0	0	0	0	1	0	0	0	13703	69	3	5	3027	5	RPRD2	1	150444409	Missense_Mutation	SNP	A	TCGA-A7-A2KD-01A-31D-A21Q-09	55775897	150444409	98806212	4	7962										
HMCN1	0	genome.wustl.edu	37	chr1	186057750	186057750	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	acctctagaaaattctgactCactggaagttcgtattttgt	7	8	3	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	186057750	186057750	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9590	p.S3197L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	26	0	0	58	19	24.68	-	-	-	T	186057750	C	T	186057750	3	4	136	1	0	0	0	0	1	0	0	0	7271	838	29	2	9840	2	HMCN1	1	186057750	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	35613341	186057750	63192871	5	7963										
HMCN1	0	genome.wustl.edu	37	chr1	186092173	186092173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tgaagcagatggcctccctcCgcctgacattacatggcata	9	13	0	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	186092173	186092173	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.12320	p.P4107L	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	39	0	0	73	27	27	-	-	-	T	186092173	C	T	186092173	3	4	136	1	0	0	0	0	1	0	0	0	7271	652	23	1	12642	1	HMCN1	1	186092173	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	34423	186092173	63158448	6	7964										
LBR	0	genome.wustl.edu	37	chr1	225599097	225599097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tgagatcaaaagtaccaattCgagggtttaattcacggcca	9	8	2	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	225599097	225599097	C	T	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.1130	p.R377Q	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	22	0	0	53	20	27.4	-	-	-	T	225599097	C	T	225599097	3	4	136	1	0	0	0	0	1	0	0	0	8706	884	31	1	741	1	LBR	1	225599097	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	39506924	225599097	23651524	7	7965										
FAM123C	0	genome.wustl.edu	37	chr2	131519756	131519756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agggaggggacaggcccctgGtcagtccttccaggagggca	17	11	1	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	2	131519756	131519756	G	T	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	missense	c.111	p.W37C	0.010	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	34	0	0	45	14	23.73	-	-	-	T	131519756	G	T	131519756	3	4	136	1	0	0	0	0	1	0	0	0	5464	1270	44	4	113	4	FAM123C	2	131519756	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		131519756	111679617	8	7966										
ALS2	0	genome.wustl.edu	37	chr2	202645634	202645634	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gcagcaccgcgctccgcatcCggcgcgagcttggcaaccca	12	18	0	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	2	202645634	202645634	C	G	SNP	ALS2	ENST00000462747	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.322	-	-	-	no_errors	ALS2	HGNC	ENSG00000003393	8	0	0	12	19	61.29	-	-	-	G	202645634	C	G	202645634	1	3	136	0	1	0	0	0	0	0	0	0	550	667	23	3		3	ALS2	2	202645634	RNA	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	71125878	202645634	40553739	9	7967										
TMCC1	0	genome.wustl.edu	37	chr3	129389467	129389467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	actgaaagtttgaaatcactCccaaagccttccccgcatca	5	14	2	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	3	129389467	129389467	C	T	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1217	p.G406E	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	35	0	0	61	14	18.67	-	-	-	T	129389467	C	T	129389467	3	4	136	1	0	0	0	0	1	0	0	0	16087	855	30	2	756	2	TMCC1	3	129389467	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09		129389467	68632963	10	7968										
TNK2	0	genome.wustl.edu	37	chr3	195603552	195603552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	ggctggtggcccagggggaaGgagcccccagagccccacca	16	15	0	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	3	195603552	195603552	G	T	SNP	TNK2	ENST00000411741	human	ensembl	69_37n	-1	novel	missense	c.56	p.P19H	0.002	NULL	pfam_GTPase_binding,superfamily_SH3_domain	-	no_start_codon:no_stop_codon	TNK2	HGNC	ENSG00000061938	18	0	0	20	17	45.95	-	-	-	T	195603552	G	T	195603552	3	4	136	1	0	0	0	0	1	0	0	0	16413	1015	35	4		4	TNK2	3	195603552	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	66214085	195603552	2418878	11	7969										
MSX1	0	genome.wustl.edu	37	chr4	4864485	4864485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	caagacgaaccgtaagccgcGgacgcccttcaccaccgcgc	10	18	1	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	4	4864485	4864485	G	A	SNP	MSX1	ENST00000382723	human	ensembl	69_37n	1	known	missense	c.527	p.R176Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132	24	0	0	63	12	16	-	-	-	A	4864485	G	A	4864485	3	1	136	1	0	0	0	0	1	0	0	0	9967	1116	39	1	533	1	MSX1	4	4864485	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		4864485	186289791	12	7970										
HSD17B11	0	genome.wustl.edu	37	chr4	88258484	88258484	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	aaacttaacactgattttttGttttaaaactgccaggaaac	5	7	0	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	4	88258484	88258484	G	A	SNP	HSD17B11	ENST00000358290	human	ensembl	69_37n	-1	known	nonsense	c.847	p.Q283*	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B11	HGNC	ENSG00000198189	44	0	0	66	8	10.81	-	-	-	A	88258484	G	A	88258484	4	1	136	1	0	0	0	0	0	1	0	0	7431	1386	48	4	59	4	HSD17B11	4	88258484	Nonsense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	83393999	88258484	102895792	13	7971										
TMEM14B	0	genome.wustl.edu	37	chr6	10750060	10750060	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gtccccaagctggagtgcagGcttccttgtcagtcttgcag	12	12	2	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	6	10750060	10750060	G	A	SNP	TMEM14B	ENST00000492297	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	38	0	0	30	22	42.31	-	-	-	A	10750060	G	A	10750060	1	1	136	0	1	0	0	0	0	0	0	0	16159	1218	42	4		4	TMEM14B	6	10750060	RNA	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		10750060	160365007	14	7972										
HECW1	0	genome.wustl.edu	37	chr7	43482155	43482155	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gtggtcagctacacacttggCcgcaggcttccaacagatca	10	13	2	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	7	43482155	43482155	C	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.972	p.G324	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	33	0	0	83	20	19.42	-	-	-	T	43482155	C	T	43482155	2	4	136	1	0	0	0	0	0	0	0	1	7093	726	26	4		4	HECW1	7	43482155	Silent	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09		43482155	115656508	15	7973										
ZNF703	0	genome.wustl.edu	37	chr8	37556061	37556061	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gcctaagccggtaccaccccTatggcaagagccacttatcc	8	16	0	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	8	37556061	37556061	T	A	SNP	ZNF703	ENST00000331569	human	ensembl	69_37n	1	known	missense	c.1642	p.Y548N	1.000	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF703	HGNC	ENSG00000183779	29	0	0	42	15	26.32	-	-	-	A	37556061	T	A	37556061	3	1	136	1	0	0	0	0	1	0	0	0	18202	1522	53	5	1648	5	ZNF703	8	37556061	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09		37556061	108807961	16	7974										
RUNX1T1	0	genome.wustl.edu	37	chr8	92998437	92998437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cctttttttaagtcctcggcGtcactgtaccgccggatcca	8	14	1	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	8	92998437	92998437	G	A	SNP	RUNX1T1	ENST00000521751	human	ensembl	69_37n	-1	known	missense	c.293	p.T98M	0.034	pfam_NHR2	pfam_NHR2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RUNX1T1	HGNC	ENSG00000079102	42	0	0	122	24	16.44	-	-	-	A	92998437	G	A	92998437	3	1	136	1	0	0	0	0	1	0	0	0	13833	1136	40	1	636	1	RUNX1T1	8	92998437	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	55442376	92998437	53365585	17	7975										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tattgaaaaagaaagcaagtTcacatgccgttgataggctg	10	6	1	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	11	0	0	17	10	37.04	-	-	-	A	69390020	T	A	69390020	3	1	136	1	0	0	0	0	1	0	0	0	650	1783	62	5	588	5	ANKRD20A4	9	69390020	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09		69390020	71823411	18	7976										
ABCA2	0	genome.wustl.edu	37	chr9	139912699	139912699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gggcccaggccgccagtaggCgcggcggatctcgttggttt	17	12	1	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	9	139912699	139912699	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	69_37n	-1	known	missense	c.1924	p.A642T	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331	56	0	0	144	30	17.24	-	-	-	T	139912699	C	T	139912699	3	4	136	1	0	0	0	0	1	0	0	0	32	768	27	1	5530	1	ABCA2	9	139912699	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	70522679	139912699	1300732	19	7977										
ERCC6	0	genome.wustl.edu	37	chr10	50732557	50732557	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tttgtttttattttgcactgGggctggaggcgtgactgggg	16	5	0	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	50732557	50732557	G	C	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.919	p.P307A	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	58	0	0	68	52	43.33	-	-	-	C	50732557	G	C	50732557	3	2	136	1	0	0	0	0	1	0	0	0	5254	1232	43	4	3630	4	ERCC6	10	50732557	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		50732557	84802190	20	7978										
ERCC6	0	genome.wustl.edu	37	chr10	50732756	50732756	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	ggtgtcatctggccagtgcgGatgagctcttcccaggcagt	14	11	3	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	50732756	50732756	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	silent	c.720	p.I240	0.915	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	45	0	0	93	65	41.14	-	-	-	A	50732756	G	A	50732756	2	1	136	1	0	0	0	0	0	0	0	1	5254	1164	41	2		2	ERCC6	10	50732756	Silent	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	199	50732756	84801991	21	7979										
BTAF1	0	genome.wustl.edu	37	chr10	93768598	93768598	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tctatcaggatggtgtgaacTggttagcatttcttaataag	10	5	3	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	93768598	93768598	T	G	SNP	BTAF1	ENST00000265990	human	ensembl	69_37n	1	known	missense	c.3826	p.W1276G	1.000	pfam_SNF2_N,superfamily_ARM-type_fold,smart_Helicase_ATP-bd	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564	39	0	0	33	24	42.11	-	-	-	G	93768598	T	G	93768598	3	3	136	1	0	0	0	0	1	0	0	0	1544	1580	55	5	3932	5	BTAF1	10	93768598	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	43035842	93768598	41766149	22	7980										
GAS2	0	genome.wustl.edu	37	chr11	22777476	22777476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cccaaggaagataccgagtgGgagaaaagatcctcttcatt	10	9	2	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	22777476	22777476	G	A	SNP	GAS2	ENST00000278187	human	ensembl	69_37n	1	known	missense	c.700	p.G234R	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935	41	0	0	83	28	25	-	-	-	A	22777476	G	A	22777476	3	1	136	1	0	0	0	0	1	0	0	0	6295	1233	43	4	722	4	GAS2	11	22777476	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		22777476	112229040	23	7981										
OR4C15	0	genome.wustl.edu	37	chr11	55322053	55322054	+	Frame_Shift_Ins	INS	-	-	T													0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gtttgtctacattgcaactgINSttgggggcaacatgctaatt							TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	55322053	55322054	-	T	INS	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	frame_shift_ins	c.271_272	p.G92fs	0.000:0.008	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	98	0	0	148	22	12.94	-	-	-	T	55322054	-	T	55322053	7	5	136	1	0	1	1	0	0	0	0	0	11121	1377	48	0	273	0	OR4C15	11	55322053	Frame_Shift_Ins	INS	-	TCGA-A7-A2KD-01A-31D-A21Q-09	32544577	55322053	79684463	24	7982										
ZFP91	0	genome.wustl.edu	37	chr11	58384773	58384773	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gttttcttgcaatatctgtgGcaaaaaatttgagaagaagg	10	4	2	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	58384773	58384773	G	C	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1307	p.G436A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	27	0	0	33	5	13.16	-	-	-	C	58384773	G	C	58384773	3	2	136	1	0	0	0	0	1	0	0	0	17751	1203	42	4	1349	4	ZFP91	11	58384773	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	3062720	58384773	76621743	25	7983										
COL4A2	0	genome.wustl.edu	37	chr13	111077189	111077189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agggtgaaaggggagcccccGgagtaacgggacccaagggc	18	10	0	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	13	111077189	111077189	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.289	p.G97R	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	31	0	0	61	14	18.67	-	-	-	A	111077189	G	A	111077189	3	1	136	1	0	0	0	0	1	0	0	0	3720	1117	39	1	303	1	COL4A2	13	111077189	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		111077189	4092689	26	7984										
RYR3	0	genome.wustl.edu	37	chr15	34151848	34151848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	atgaaattgaagaccctgctGgtgatccttatgaaatgtat	9	6	0	5			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	15	34151848	34151848	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.14215	p.G4739S	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	106	0	0	147	32	17.88	-	-	-	A	34151848	G	A	34151848	3	1	136	1	0	0	0	0	1	0	0	0	13856	1348	47	4	14613	4	RYR3	15	34151848	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		34151848	68379544	27	7985										
THBS1	0	genome.wustl.edu	37	chr15	39874437	39874437	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tttgacatctttgaactcacCggggccgcccgcaaggggtc	12	13	2	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	15	39874437	39874437	C	T	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	silent	c.111	p.T37	0.057	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	23	0	0	35	6	14.63	-	-	-	T	39874437	C	T	39874437	2	4	136	1	0	0	0	0	0	0	0	1	15948	639	23	1		1	THBS1	15	39874437	Silent	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	5722589	39874437	62656955	28	7986										
DEXI	0	genome.wustl.edu	37	chr16	11023406	11023406	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tgttggcacgaagcttttgaGgggagcaggtctaacaagaa	14	6	1	2			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	16	11023406	11023406	G	T	SNP	DEXI	ENST00000469379	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.114	-	-	-	no_errors	DEXI	HGNC	ENSG00000182108	8	0	0	1	4	80	-	-	-	T	11023406	G	T	11023406	1	4	136	0	1	0	0	0	0	0	0	0	4487	1015	35	4		4	DEXI	16	11023406	RNA	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09		11023406	79331347	29	7987										
TCF25	0	genome.wustl.edu	37	chr16	89952461	89952461	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tctgcggctgcccttctctgTggctgccacagagacttcgt	11	14	2	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	16	89952461	89952461	T	C	SNP	TCF25	ENST00000565404	human	ensembl	69_37n	1	putative	missense	c.400	p.W134R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF25	HGNC	ENSG00000141002	36	0	0	41	12	22.22	-	-	-	C	89952461	T	C	89952461	3	2	136	1	0	0	0	0	1	0	0	0	15788	1711	59	5		5	TCF25	16	89952461	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	78929055	89952461	402292	30	7988										
TP53	0	genome.wustl.edu	37	chr17	7579409	7579410	+	Frame_Shift_Del	DEL	AG	AG	-													0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	gggaagggacagaagatgacAggggccaggagggggctggt							TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	7579409	7579410	AG	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.278_277	p.L93fs	1.000:1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	43	0	0	7	10	55.56	-	-	-	-	7579410	AG	-	7579409	7	5	136	1	0	1	0	1	0	0	0	0	16477	188	7	0	1024	0	TP53	17	7579409	Frame_Shift_Del	DEL	AG	TCGA-A7-A2KD-01A-31D-A21Q-09		7579409	73615801	31	7989										
DNAH2	0	genome.wustl.edu	37	chr17	7646583	7646583	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	ttctcatacaatatgtttgcTatcgtcattttacttttttt	3	7	2	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	7646583	7646583	T	C	SNP	DNAH2	ENST00000082259	human	ensembl	69_37n	1	known	missense	c.2273	p.L758P	0.000	NULL	pfam_Dynein_heavy_dom-1	-	no_errors	DNAH2	HGNC	ENSG00000183914	49	0	0	36	5	12.2	-	-	-	C	7646583	T	C	7646583	3	2	136	1	0	0	0	0	1	0	0	0	4638	1537	53	5		5	DNAH2	17	7646583	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	67174	7646583	73548627	32	7990										
KIAA0100	0	genome.wustl.edu	37	chr17	26965606	26965606	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	ccaagttgaatggaaatgttGacattggagatggaggtgct	14	4	0	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	26965606	26965606	G	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.1284	p.V428	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	36	0	0	71	17	19.32	-	-	-	C	26965606	G	C	26965606	2	2	136	1	0	0	0	0	0	0	0	1	8206	1277	45	2		2	KIAA0100	17	26965606	Silent	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	19319023	26965606	54229604	33	7991										
MRPL45	0	genome.wustl.edu	37	chr17	36478436	36478436	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	ctgaaaccagaagaagaataTgaagaggcacaaggagaggc	13	6	0	7			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	36478436	36478436	T	A	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	nonsense	c.879	p.Y293*	0.998	NULL	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	25	0	0	570	137	19.35	-	-	-	A	36478436	T	A	36478436	4	1	136	1	0	0	0	0	0	1	0	0	9881	1471	51	5	839	5	MRPL45	17	36478436	Nonsense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	9512830	36478436	44716774	34	7992										
SOCS6	0	genome.wustl.edu	37	chr18	67993118	67993118	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agcaaacgtgccagatggttCttttcttgttcgggacagtt	11	8	2	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	18	67993118	67993118	C	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.1214	p.S405F	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	20	0	0	49	8	14.04	-	-	-	T	67993118	C	T	67993118	3	4	136	1	0	0	0	0	1	0	0	0	15007	913	32	2	1216	2	SOCS6	18	67993118	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09		67993118	10084130	35	7993										
SOCS6	0	genome.wustl.edu	37	chr18	67993262	67993262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agatgtggaaggacatacgtCcatagttgatctaattgagc	11	6	1	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	18	67993262	67993262	C	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.1358	p.S453F	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	27	0	0	67	8	10.67	-	-	-	T	67993262	C	T	67993262	3	4	136	1	0	0	0	0	1	0	0	0	15007	855	30	2	1360	2	SOCS6	18	67993262	Missense_Mutation	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	144	67993262	10083986	36	7994										
POLRMT	0	genome.wustl.edu	37	chr19	629640	629640	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cgaccagcaggtggtgggcgAggggcagctggtcagtgagc	20	9	1	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	629640	629640	A	T	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.767	p.L256H	0.007	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	36	0	0	40	16	28.57	-	-	-	T	629640	A	T	629640	3	4	136	1	0	0	0	0	1	0	0	0	12312	304	11	5	3046	5	POLRMT	19	629640	Missense_Mutation	SNP	A	TCGA-A7-A2KD-01A-31D-A21Q-09		629640	58499343	37	7995										
ZNF208	0	genome.wustl.edu	37	chr19	22155166	22155166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cctttgccacattcttcacaTttgtagggtttctctccagt	6	12	3	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	22155166	22155166	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2670	p.K890N	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	32	0	0	59	16	21.33	-	-	-	G	22155166	T	G	22155166	3	3	136	1	0	0	0	0	1	0	0	0	17862	1490	52	5	1176	5	ZNF208	19	22155166	Missense_Mutation	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	21525526	22155166	36973817	38	7996										
DPY19L3	0	genome.wustl.edu	37	chr19	32959574	32959574	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tatctttttttcatttaatcTtagtgatagttgtgggtgta	8	3	3	1			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	32959574	32959574	T	A	SNP	DPY19L3	ENST00000592178	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	DPY19L3	HGNC	ENSG00000178904	25	0	0	16	9	36	-	-	-	A	32959574	T	A	32959574	1	1	136	0	1	0	0	0	0	0	0	0	4777	1624	56	5		5	DPY19L3	19	32959574	RNA	SNP	T	TCGA-A7-A2KD-01A-31D-A21Q-09	10804408	32959574	26169409	39	7997										
HAS1	0	genome.wustl.edu	37	chr19	52217306	52217306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	tgtctgctggctcagccaccGcaggaaggacgagggcgtct	15	12	3	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	52217306	52217306	G	A	SNP	HAS1	ENST00000222115	human	ensembl	69_37n	-1	known	missense	c.1111	p.R371W	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509	37	0	0	53	20	27.4	-	-	-	A	52217306	G	A	52217306	3	1	136	1	0	0	0	0	1	0	0	0	7012	1086	38	1	629	1	HAS1	19	52217306	Missense_Mutation	SNP	G	TCGA-A7-A2KD-01A-31D-A21Q-09	19257732	52217306	6911677	40	7998										
CRELD2	0	genome.wustl.edu	37	chr22	50315537	50315537	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agatgtccaaggaagcttcgAgggcccagaaggatgaatga	14	7	0	4			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	22	50315537	50315537	A	G	SNP	CRELD2	ENST00000498354	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CRELD2	HGNC	ENSG00000184164	10	0	0	1	12	92.31	-	-	-	G	50315537	A	G	50315537	1	3	136	0	1	0	0	0	0	0	0	0	3897	319	11	5		5	CRELD2	22	50315537	RNA	SNP	A	TCGA-A7-A2KD-01A-31D-A21Q-09		50315537	989029	41	7999										
FRMPD4	0	genome.wustl.edu	37	chrX	12722603	12722603	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	cttggtaccaccgggtaaaaAggtatcacatttccatctta	7	10	2	0			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	X	12722603	12722603	A	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.1196	p.K399M	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	39	0	0	61	10	14.08	-	-	-	T	12722603	A	T	12722603	3	4	136	1	0	0	0	0	1	0	0	0	6108	86	3	5	1238	5	FRMPD4	23	12722603	Missense_Mutation	SNP	A	TCGA-A7-A2KD-01A-31D-A21Q-09		12722603	142547957	42	8000										
WAS	0	genome.wustl.edu	37	chrX	48547822	48547822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.924965530131156	0.894957983193277	1.78991596638655	0.715966386554622	1	1	0	agcagagccatccactcctcCggtgagctgatcctgccggg	12	15	0	3			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	X	48547822	48547822	C	T	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	silent	c.1452	p.S484	0.951	superfamily_WASP_C	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	52	0	0	55	27	32.93	-	-	-	T	48547822	C	T	48547822	2	4	136	1	0	0	0	0	0	0	0	1	17348	666	23	1		1	WAS	23	48547822	Silent	SNP	C	TCGA-A7-A2KD-01A-31D-A21Q-09	35825219	48547822	106722738	43	8001										
MYT1L	0	genome.wustl.edu	37	chr2	1819997	1819997	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccattactaacacatcacaCaagcactttccagctcaggt	4	14	2	0			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	2	1819997	1819997	C	T	SNP	MYT1L	ENST00000471668	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	MYT1L	HGNC	ENSG00000186487	56	0	0	63	17	21.25	-	-	-	T	1819997	C	T	1819997	1	4	137	0	1	0	0	0	0	0	0	0	10179	493	17	4		4	MYT1L	2	1819997	RNA	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09		1819997	241379376	1	8002										
LRP2	0	genome.wustl.edu	37	chr2	170100025	170100025	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgactaggttggcatgtctcTgtcgaatctaatgtcatccg	10	9	3	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	2	170100025	170100025	T	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.3438	p.T1146	0.001	superfamily_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	60	0	0	51	12	19.05	-	-	-	C	170100025	T	C	170100025	2	2	137	1	0	0	0	0	0	0	0	1	9022	1567	55	5		5	LRP2	2	170100025	Silent	SNP	T	TCGA-A7-A3IY-01A-21D-A21Q-09	168280028	170100025	73099348	2	8003										
FSIP2	0	genome.wustl.edu	37	chr2	186670925	186670925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caagctctttcagttatcctCcttgaagtccaagagaaatc	6	11	2	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	2	186670925	186670925	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.17159	p.S5720Y	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	21	0	0	17	6	26.09	-	-	-	A	186670925	C	A	186670925	3	1	137	1	0	0	0	0	1	0	0	0	6124	855	30	2	17225	2	FSIP2	2	186670925	Missense_Mutation	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09	16570900	186670925	56528448	3	8004										
COL6A3	0	genome.wustl.edu	37	chr2	238303516	238303516	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actacgataacctgagggacTccgtcaccggcccggcttcc	10	16	1	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	2	238303516	238303516	T	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.423	p.G141	0.984	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	30	0	0	36	6	14.29	-	-	-	A	238303516	T	A	238303516	2	1	137	1	0	0	0	0	0	0	0	1	3731	1538	54	5		5	COL6A3	2	238303516	Silent	SNP	T	TCGA-A7-A3IY-01A-21D-A21Q-09	51632591	238303516	4895857	4	8005										
SEMA5B	0	genome.wustl.edu	37	chr3	122631793	122631793	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgcacgttctcttgcggacGcggaagcccagctcgcagtc	13	14	1	0			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	3	122631793	122631793	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	silent	c.2784	p.R928	0.976	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	26	0	0	33	19	36.54	-	-	-	A	122631793	G	A	122631793	2	1	137	1	0	0	0	0	0	0	0	1	14126	1074	38	1		1	SEMA5B	3	122631793	Silent	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09		122631793	75390637	5	8006										
PHC3	0	genome.wustl.edu	37	chr3	169847202	169847202	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	ggggtgggtcttgagttgaaTtctgaagtgtgattggctga							TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	3	169847202	169847202	T	-	DEL	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	frame_shift_del	c.1058	p.N353fs	0.075	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	85	0	0	155	39	20.1	-	-	-	-	169847202	T	-	169847202	7	5	137	1	0	1	0	1	0	0	0	0	11892	1493	52	0	1961	0	PHC3	3	169847202	Frame_Shift_Del	DEL	T	TCGA-A7-A3IY-01A-21D-A21Q-09	47215409	169847202	28175228	6	8007										
LRP2BP	0	genome.wustl.edu	37	chr4	186299270	186299270	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccactggaaaaatttttggTttttagcagcatactgagat	8	6	0	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	4	186299270	186299270	T	G	SNP	LRP2BP	ENST00000362004	human	ensembl	69_37n	-1	known	missense	c.71	p.N24T	0.003	NULL	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771	45	0	0	38	8	17.39	-	-	-	G	186299270	T	G	186299270	3	3	137	1	0	0	0	0	1	0	0	0	9023	1725	60	5	1004	5	LRP2BP	4	186299270	Missense_Mutation	SNP	T	TCGA-A7-A3IY-01A-21D-A21Q-09		186299270	4855006	7	8008										
PCDHGB1	0	genome.wustl.edu	37	chr5	140731009	140731009	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ttcaaattagaatccacctcGaagaattattacaagctggt	6	8	1	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	5	140731009	140731009	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.1182	p.S394	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	21	0	0	23	7	23.33	-	-	-	A	140731009	G	A	140731009	2	1	137	1	0	0	0	0	0	0	0	1	11635	1045	37	1		1	PCDHGB1	5	140731009	Silent	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09		140731009	40184251	8	8009										
SMOC2	0	genome.wustl.edu	37	chr6	168928398	168928398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgtggcccacaagacgcccCggtgcccgggtaggtctgac	14	16	1	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	6	168928398	168928398	C	T	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.454	p.R152W	0.406	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	46	0	0	35	14	28.57	-	-	-	T	168928398	C	T	168928398	3	4	137	1	0	0	0	0	1	0	0	0	14891	643	23	1	468	1	SMOC2	6	168928398	Missense_Mutation	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09		168928398	2186669	9	8010										
THBS2	0	genome.wustl.edu	37	chr6	169641884	169641884	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgaggttctcgctgagctgGttcacgaggacgtggagccc	15	10	2	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	6	169641884	169641884	G	A	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	silent	c.864	p.N288	1.000	NULL	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	52	0	0	54	12	18.18	-	-	-	A	169641884	G	A	169641884	2	1	137	1	0	0	0	0	0	0	0	1	15949	1252	44	4		4	THBS2	6	169641884	Silent	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09	713486	169641884	1473183	10	8011										
SLC35D2	0	genome.wustl.edu	37	chr9	99083270	99083270	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctagaagagcagctggggCtccacctaccgagtcccagt	11	15	0	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	9	99083270	99083270	C	G	SNP	SLC35D2	ENST00000490599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SLC35D2	HGNC	ENSG00000130958	25	0	0	13	18	58.06	-	-	-	G	99083270	C	G	99083270	1	3	137	0	1	0	0	0	0	0	0	0	14671	812	28	4		4	SLC35D2	9	99083270	RNA	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09		99083270	42130161	11	8012										
CCDC73	0	genome.wustl.edu	37	chr11	32635498	32635498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagcagttttcacatctttgGcttgtgaagcatgactattc	8	9	2	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	11	32635498	32635498	G	T	SNP	CCDC73	ENST00000335185	human	ensembl	69_37n	-1	known	missense	c.2366	p.A789D	0.829	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714	34	0	0	36	4	10	-	-	-	T	32635498	G	T	32635498	3	4	137	1	0	0	0	0	1	0	0	0	2873	1203	42	4	885	4	CCDC73	11	32635498	Missense_Mutation	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09		32635498	102371018	12	8013										
RTN3	0	genome.wustl.edu	37	chr11	63487290	63487290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatcaaaggtgtgcaaggcaAtatgcagaaacaggatgaca	11	6	1	2			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	11	63487290	63487290	A	G	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	missense	c.1316	p.N439S	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	36	0	0	41	12	22.64	-	-	-	G	63487290	A	G	63487290	3	3	137	1	0	0	0	0	1	0	0	0	13813	101	4	5	1326	5	RTN3	11	63487290	Missense_Mutation	SNP	A	TCGA-A7-A3IY-01A-21D-A21Q-09	30851792	63487290	71519226	13	8014										
ORAOV1	0	genome.wustl.edu	37	chr11	69471746	69471746	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ggattcagtggagacctcgtCccttgttggagtatctgcgc	13	10	2	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	11	69471746	69471746	C	T	SNP	ORAOV1	ENST00000542515	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ORAOV1	HGNC	ENSG00000149716	10	0	0	8	5	38.46	-	-	-	T	69471746	C	T	69471746	1	4	137	0	1	0	0	0	0	0	0	0	11333	870	30	2		2	ORAOV1	11	69471746	RNA	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09	5984456	69471746	65534770	14	8015										
TMX1	0	genome.wustl.edu	37	chr14	51707075	51707075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgttgctttggggtgctcCctggacgcacgggcggcgga	18	11	0	0			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	14	51707075	51707075	C	T	SNP	TMX1	ENST00000457354	human	ensembl	69_37n	1	known	missense	c.65	p.P22L	0.924	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX1	HGNC	ENSG00000139921	61	0	0	54	20	26.67	-	-	-	T	51707075	C	T	51707075	3	4	137	1	0	0	0	0	1	0	0	0	16361	623	22	4	67	4	TMX1	14	51707075	Missense_Mutation	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09		51707075	55642465	15	8016										
KIAA0430	0	genome.wustl.edu	37	chr16	15696497	15696498	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	ggaaggaaagaaggaagaggINSagaaagaaaaggaggaggga							TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	16	15696497	15696498	-	C	INS	KIAA0430	ENST00000344181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3322_3321	p.P1107fs	0.001:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	19	0	0	14	6	30	-	-	-	C	15696498	-	C	15696497	7	5	137	1	0	1	1	0	0	0	0	0	8229	1189	41	0		0	KIAA0430	16	15696497	Frame_Shift_Ins	INS	-	TCGA-A7-A3IY-01A-21D-A21Q-09		15696497	74658256	16	8017										
HOXB3	0	genome.wustl.edu	37	chr17	46627865	46627865	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcccggaagggtgatgggaaAggtggttgaggccatagagg	19	5	0	3			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	17	46627865	46627865	A	G	SNP	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	missense	c.1127	p.L376P	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	62	0	0	77	24	23.76	-	-	-	G	46627865	A	G	46627865	3	3	137	1	0	0	0	0	1	0	0	0	7353	72	3	5	172	5	HOXB3	17	46627865	Missense_Mutation	SNP	A	TCGA-A7-A3IY-01A-21D-A21Q-09		46627865	34567345	17	8018										
C19orf42	0	genome.wustl.edu	37	chr19	16757702	16757702	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taacactgaatgtccaaaaaTacggctgtgttaaactaaca	6	8	0	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	19	16757702	16757702	T	C	SNP	C19orf42	ENST00000397349	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C19orf42	HGNC	ENSG00000214046	31	0	0	30	4	11.76	-	-	-	C	16757702	T	C	16757702	1	2	137	0	1	0	0	0	0	0	0	0	1943	1421	49	5		5	C19orf42	19	16757702	RNA	SNP	T	TCGA-A7-A3IY-01A-21D-A21Q-09		16757702	42371281	18	8019										
ZFP36	0	genome.wustl.edu	37	chr19	39899009	39899009	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctccttctcgccctccagCtccccaccaccacctgggga	7	21	1	0			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	19	39899009	39899009	C	G	SNP	ZFP36	ENST00000248673	human	ensembl	69_37n	1	known	missense	c.651	p.S217R	0.994	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016	126	0	0	145	26	15.2	-	-	-	G	39899009	C	G	39899009	3	3	137	1	0	0	0	0	1	0	0	0	17741	796	28	4	657	4	ZFP36	19	39899009	Missense_Mutation	SNP	C	TCGA-A7-A3IY-01A-21D-A21Q-09	23141307	39899009	19229974	19	8020										
BCR	0	genome.wustl.edu	37	chr22	23658000	23658000	+	RNA	SNP	G	G	A													0	0	1	0	0	0	1	1	0	gccctgggagacagggtgaaGggagtggtttttatgaactt							TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	22	23658000	23658000	G	A	SNP	BCR	ENST00000436990	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	36	0	0	42	8	16	-	-	-	A	23658000	G	A	23658000	1	1	137	0	1	0	0	0	0	0	0	0	1392	1015	35	4		4	BCR	22	23658000	RNA	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09		23658000	27646566	20	8021	61	2								
BCR	0	genome.wustl.edu	37	chr22	23658002	23658002	+	RNA	SNP	G	G	C													0	0	1	0	0	0	1	1	0	cctgggagacagggtgaaggGagtggtttttatgaacttaa							TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	22	23658002	23658002	G	C	SNP	BCR	ENST00000436990	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.329	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	35	0	0	40	8	16.67	-	-	-	C	23658002	G	C	23658002	1	2	137	0	1	0	0	0	0	0	0	0	1392	1189	41	2		2	BCR	22	23658002	RNA	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09	2	23658002	27646564	21	8022	61	2								
ODZ1	0	genome.wustl.edu	37	chrX	123519751	123519751	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatagtcttggataaaagaaGtgctactgtccggtggggtg	14	5	1	1			TCGA-A7-A3IY-01A-21D-A21Q-09	TCGA-A7-A3IY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48173064-ea1c-4cf2-89a3-f08baae2ea05	d4ab2281-9ee9-45c9-9e97-686602678727	X	123519751	123519751	G	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.5852	p.T1951N	0.996	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	77	0	0	83	11	11.7	-	-	-	T	123519751	G	T	123519751	3	4	137	1	0	0	0	0	1	0	0	0	10907	1029	36	4	2362	4	ODZ1	23	123519751	Missense_Mutation	SNP	G	TCGA-A7-A3IY-01A-21D-A21Q-09		123519751	31750809	22	8023										
PLEKHN1	0	genome.wustl.edu	37	chr1	907800	907800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgccgagagcttcccagggtCgcaggtgaggggtcaatagg	17	9	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	907800	907800	C	T	SNP	PLEKHN1	ENST00000379409	human	ensembl	69_37n	1	known	missense	c.1154	p.S385L	0.007	NULL	smart_Pleckstrin_homology	-	no_errors	PLEKHN1	HGNC	ENSG00000187583	17	0	0	18	7	28	-	-	-	T	907800	C	T	907800	3	4	138	1	0	0	0	0	1	0	0	0	12157	893	31	1	1072	1	PLEKHN1	1	907800	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		907800	248342821	1	8024										
ALDH4A1	0	genome.wustl.edu	37	chr1	19209063	19209063	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	catccaaatctttctctgctCcatcatttatttactagtca	2	12	4	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	19209063	19209063	C	T	SNP	ALDH4A1	ENST00000454547	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALDH4A1	HGNC	ENSG00000159423	85	0	0	48	28	36.36	-	-	-	T	19209063	C	T	19209063	1	4	138	0	1	0	0	0	0	0	0	0	501	870	30	2		2	ALDH4A1	1	19209063	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	18301263	19209063	230041558	2	8025										
CELA3B	0	genome.wustl.edu	37	chr1	22304463	22304463	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	cctcccgcctcggcctctcaAagcactaggattacaggtgt	9	15	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	22304463	22304463	A	G	SNP	CELA3B	ENST00000374666	human	ensembl	69_37n	1	known	silent	c.75	p.Q25	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_stop_codon:bad_bp_length_for_coding_region	CELA3B	HGNC	ENSG00000219073	15	0	0	11	5	31.25	-	-	-	G	22304463	A	G	22304463	2	3	138	1	0	0	0	0	0	0	0	1	3243	29	1	5		5	CELA3B	1	22304463	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	3095400	22304463	226946158	3	8026										
RUNX3	0	genome.wustl.edu	37	chr1	25256116	25256116	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	cgtcttgttgcagcgccagtGcgagggcagcacggagcaga	16	11	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	25256116	25256116	G	T	SNP	RUNX3	ENST00000338888	human	ensembl	69_37n	-1	known	missense	c.286	p.H96N	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,prints_AML1_Runt,pfscan_AML1/Runt_N	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,prints_AML1_Runt,pfscan_AML1/Runt_N	-	no_errors	RUNX3	HGNC	ENSG00000020633	26	0	0	6	3	33.33	-	-	-	T	25256116	G	T	25256116	3	4	138	1	0	0	0	0	1	0	0	0	13835	1319	46	4	1023	4	RUNX3	1	25256116	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	2951653	25256116	223994505	4	8027										
ZNF687	0	genome.wustl.edu	37	chr1	151260644	151260644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agctgtcccacctgtctctgGacctctggccttgcctgcct	9	17	2	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	151260644	151260644	G	C	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.1877	p.G626A	0.131	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	50	0	0	43	17	28.33	-	-	-	C	151260644	G	C	151260644	3	2	138	1	0	0	0	0	1	0	0	0	18188	1174	41	2	1879	2	ZNF687	1	151260644	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	126004528	151260644	97989977	5	8028										
RNASEL	0	genome.wustl.edu	37	chr1	182551306	182551306	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttcctcatctggagaaagttGaaccacctcttcattacttt	5	11	4	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	182551306	182551306	G	A	SNP	RNASEL	ENST00000367559	human	ensembl	69_37n	-1	known	nonsense	c.1654	p.Q552*	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RNASEL	HGNC	ENSG00000135828	31	0	0	28	12	30	-	-	-	A	182551306	G	A	182551306	4	1	138	1	0	0	0	0	0	1	0	0	13502	1299	45	2	587	2	RNASEL	1	182551306	Nonsense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	31290662	182551306	66699315	6	8029										
HMCN1	0	genome.wustl.edu	37	chr1	186106712	186106712	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atccaaaagaggagtcgtctGtgcaaccagccccttccagc	9	14	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	186106712	186106712	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.13665	p.L4555	0.953	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	32	0	0	36	4	10	-	-	-	T	186106712	G	T	186106712	2	4	138	1	0	0	0	0	0	0	0	1	7271	1364	48	4		4	HMCN1	1	186106712	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	3555406	186106712	63143909	7	8030										
RGS18	0	genome.wustl.edu	37	chr1	192150504	192150504	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tggatagcctgtgaagatttCaagaaaagcaagggacctca	11	7	2	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	192150504	192150504	C	T	SNP	RGS18	ENST00000367460	human	ensembl	69_37n	1	known	silent	c.366	p.F122	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS18	HGNC	ENSG00000150681	84	0	0	79	28	26.17	-	-	-	T	192150504	C	T	192150504	2	4	138	1	0	0	0	0	0	0	0	1	13384	825	29	2		2	RGS18	1	192150504	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	6043792	192150504	57100117	8	8031										
GPR25	0	genome.wustl.edu	37	chr1	200843069	200843069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tggccttcgtcaacagctgcGccaacccgctcatctacctc	7	18	3	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	200843069	200843069	G	T	SNP	GPR25	ENST00000304244	human	ensembl	69_37n	1	known	missense	c.904	p.A302S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR25	HGNC	ENSG00000170128	22	0	0	17	3	15	-	-	-	T	200843069	G	T	200843069	3	4	138	1	0	0	0	0	1	0	0	0	6733	1087	38	3	906	3	GPR25	1	200843069	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	8692565	200843069	48407552	9	8032										
OR2T8	0	genome.wustl.edu	37	chr1	248085011	248085011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcacatgcgctctacagaagCccgcaagaaggcctttgcca	10	14	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	1	248085011	248085011	C	G	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.692	p.A231G	0.131	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	20	0	0	24	5	17.24	-	-	-	G	248085011	C	G	248085011	3	3	138	1	0	0	0	0	1	0	0	0	11103	739	26	4	694	4	OR2T8	1	248085011	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	47241942	248085011	1165610	10	8033										
GRHL1	0	genome.wustl.edu	37	chr2	10098918	10098918	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atgtgtgctaatatcaggttCcaagagagagaaggtcatca	11	6	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	10098918	10098918	C	G	SNP	GRHL1	ENST00000324907	human	ensembl	69_37n	1	known	missense	c.211	p.P71A	1.000	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317	18	0	0	3	10	76.92	-	-	-	G	10098918	C	G	10098918	3	3	138	1	0	0	0	0	1	0	0	0	6814	855	30	2	221	2	GRHL1	2	10098918	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		10098918	233100455	11	8034										
REL	0	genome.wustl.edu	37	chr2	61128216	61128216	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ggcaggaatcaatccattcaAtggtaagtatgtttgataaa	9	5	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	61128216	61128216	A	G	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	missense	c.392	p.N131S	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	23	0	0	13	11	45.83	-	-	-	G	61128216	A	G	61128216	3	3	138	1	0	0	0	0	1	0	0	0	13298	101	4	5	406	5	REL	2	61128216	Missense_Mutation	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	51029298	61128216	182071157	12	8035										
ARHGAP25	0	genome.wustl.edu	37	chr2	69002760	69002760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tcctccaggaagcaccaggaCgggcactgtggagtttccta	12	12	0	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	69002760	69002760	C	T	SNP	ARHGAP25	ENST00000473986	human	ensembl	69_37n	1	known	missense	c.200	p.T67M	0.000	NULL	NULL	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	31	0	0	35	4	10.26	-	-	-	T	69002760	C	T	69002760	3	4	138	1	0	0	0	0	1	0	0	0	876	551	19	1		1	ARHGAP25	2	69002760	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	7874544	69002760	174196613	13	8036										
IL1RL1	0	genome.wustl.edu	37	chr2	102957716	102957716	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atactcattggattcaaagtCtaatgagaggctttgtgatg	10	5	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	102957716	102957716	C	T	SNP	IL1RL1	ENST00000393393	human	ensembl	69_37n	1	known	silent	c.679	p.L227	0.001	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,prints_IL1_rcpt_I/II,pfscan_Ig-like	-	no_errors	IL1RL1	HGNC	ENSG00000115602	37	0	0	43	5	10.42	-	-	-	T	102957716	C	T	102957716	2	4	138	1	0	0	0	0	0	0	0	1	7717	928	32	2		2	IL1RL1	2	102957716	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	33954956	102957716	140241657	14	8037										
CCDC74B	0	genome.wustl.edu	37	chr2	130900188	130900188	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ccctaggcactgccccagctAcgatgttcccaggctggctc	10	17	0	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	130900188	130900188	A	G	SNP	CCDC74B	ENST00000392984	human	ensembl	69_37n	-1	known	missense	c.368	p.V123A	0.000	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	29	0	0	26	8	23.53	-	-	-	G	130900188	A	G	130900188	3	3	138	1	0	0	0	0	1	0	0	0	2875	406	14	5		5	CCDC74B	2	130900188	Missense_Mutation	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	27942472	130900188	112299185	15	8038										
STAT1	0	genome.wustl.edu	37	chr2	191863009	191863009	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgttcttgtttctgatcactCtttgccacaccattggtctc	6	12	5	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	191863009	191863009	C	G	SNP	STAT1	ENST00000361099	human	ensembl	69_37n	-1	known	missense	c.567	p.K189N	0.253	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	37	0	0	22	20	47.62	-	-	-	G	191863009	C	G	191863009	3	3	138	1	0	0	0	0	1	0	0	0	15355	912	32	2	1761	2	STAT1	2	191863009	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	60962821	191863009	51336364	16	8039										
RAB17	0	genome.wustl.edu	37	chr2	238483164	238483164	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ggggcaacttcaccaagatgTggaaatcctgggcccacccc	11	14	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	2	238483164	238483164	T	C	SNP	RAB17	ENST00000409576	human	ensembl	69_37n	-1	putative	silent	c.75	p.P25	0.000	NULL	NULL	-	no_errors	RAB17	HGNC	ENSG00000124839	36	0	0	33	4	10.81	-	-	-	C	238483164	T	C	238483164	2	2	138	1	0	0	0	0	0	0	0	1	12985	1711	59	5		5	RAB17	2	238483164	Silent	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	46620155	238483164	4716209	17	8040										
SYN2	0	genome.wustl.edu	37	chr3	12224979	12224979	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tttcaaagcagaaattttaaGccaaaaacaaacgaaaggaa	6	6	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	12224979	12224979	G	T	SNP	SYN2	ENST00000425297	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	34	0	0	45	19	29.69	-	-	-	T	12224979	G	T	12224979	1	4	138	0	1	0	0	0	0	0	0	0	15533	986	34	4		4	SYN2	3	12224979	RNA	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		12224979	185797451	18	8041										
GUCA1C	0	genome.wustl.edu	37	chr3	108626979	108626979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tctcagcacattggagaagtCgaagctcttgtaaacaatct	8	9	3	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	108626979	108626979	C	T	SNP	GUCA1C	ENST00000261047	human	ensembl	69_37n	-1	known	missense	c.520	p.D174N	0.114	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472	28	0	0	38	11	22.45	-	-	-	T	108626979	C	T	108626979	3	4	138	1	0	0	0	0	1	0	0	0	6941	884	31	1	113	1	GUCA1C	3	108626979	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	96402000	108626979	89395451	19	8042										
MORC1	0	genome.wustl.edu	37	chr3	108682297	108682297	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aacaatagtgccagttttatAcgaagattcttcagcttatc	6	8	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	108682297	108682297	A	G	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	silent	c.2763	p.R921	0.032	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	50	0	0	49	11	18.33	-	-	-	G	108682297	A	G	108682297	2	3	138	1	0	0	0	0	0	0	0	1	9773	378	14	5		5	MORC1	3	108682297	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	55318	108682297	89340133	20	8043										
CPNE4	0	genome.wustl.edu	37	chr3	131253669	131253669	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	accaagtatatttcgtctatCaacattcagtaaatgtttca	4	8	4	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	131253669	131253669	C	G	SNP	CPNE4	ENST00000503204	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	CPNE4	HGNC	ENSG00000196353	22	0	0	16	16	50	-	-	-	G	131253669	C	G	131253669	1	3	138	0	1	0	0	0	0	0	0	0	3844	841	29	2		2	CPNE4	3	131253669	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	22571372	131253669	66768761	21	8044										
CPNE4	0	genome.wustl.edu	37	chr3	131253786	131253786	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttttatttcaaggcgacatgCtgtaatgtaaatagtaagtt	8	4	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	131253786	131253786	C	T	SNP	CPNE4	ENST00000503204	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CPNE4	HGNC	ENSG00000196353	40	0	0	22	14	38.89	-	-	-	T	131253786	C	T	131253786	1	4	138	0	1	0	0	0	0	0	0	0	3844	812	28	4		4	CPNE4	3	131253786	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	117	131253786	66768644	22	8045										
PLCH1	0	genome.wustl.edu	37	chr3	155311860	155311860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaggtccagggactccatgtGgttgccatggtagatggtga	16	7	0	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	155311860	155311860	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.304	p.H102Y	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	53	0	0	37	11	22.92	-	-	-	A	155311860	G	A	155311860	3	1	138	1	0	0	0	0	1	0	0	0	12111	1348	47	4	4876	4	PLCH1	3	155311860	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	24058074	155311860	42710570	23	8046										
MUC4	0	genome.wustl.edu	37	chr3	195509955	195509955	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaagggatggtgacaggaagAgaggtggcatgacctgtgaa	18	4	0	4			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	195509955	195509955	A	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.8496	p.S2832	0.089	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	75	0	0	114	14	10.94	-	-	-	C	195509955	A	C	195509955	2	2	138	1	0	0	0	0	0	0	0	1	10050	291	11	5		5	MUC4	3	195509955	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	40198095	195509955	2512475	24	8047										
MUC4	0	genome.wustl.edu	37	chr3	195513102	195513102	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gtgtcatctgtggaagctgaAgaaaggccggtgacaggaag	16	6	2	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	3	195513102	195513102	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5349	p.S1783	0.011	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	52	0	0	94	12	11.32	-	-	-	G	195513102	A	G	195513102	2	3	138	1	0	0	0	0	0	0	0	1	10050	59	3	5		5	MUC4	3	195513102	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	3147	195513102	2509328	25	8048										
ITGA2	0	genome.wustl.edu	37	chr5	52361805	52361805	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tttggacaagtggttcaactCtggtgagtcaggaagagcca	13	7	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	52361805	52361805	C	T	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	silent	c.1941	p.L647	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	38	0	0	36	26	41.94	-	-	-	T	52361805	C	T	52361805	2	4	138	1	0	0	0	0	0	0	0	1	7929	900	32	2		2	ITGA2	5	52361805	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		52361805	128553455	26	8049										
CRHBP	0	genome.wustl.edu	37	chr5	76264653	76264653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tatcgtcagctggagccgtaCgagctggaaaacccaaatgg	12	10	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	76264653	76264653	C	T	SNP	CRHBP	ENST00000274368	human	ensembl	69_37n	1	known	silent	c.912	p.Y304	0.000	pfam_CRF-bd,pirsf_CRF-bd	pfam_CRF-bd,superfamily_CUB,pirsf_CRF-bd	-	no_errors	CRHBP	HGNC	ENSG00000145708	36	0	0	31	18	36.73	-	-	-	T	76264653	C	T	76264653	2	4	138	1	0	0	0	0	0	0	0	1	3900	547	19	1		1	CRHBP	5	76264653	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	23902848	76264653	104650607	27	8050										
APC	0	genome.wustl.edu	37	chr5	112155003	112155006	+	Frame_Shift_Del	DEL	AAGC	AAGC	-													0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aacctgttgggagtggcaggAagctcatgaaccaggcatgg							TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	AAGC	AAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	112155003	112155006	AAGC	-	DEL	APC	ENST00000257430	human	ensembl	69_37n	1	known	frame_shift_del	c.1274_1277	p.E425fs	1.000:1.000:1.000:1.000	superfamily_ARM-type_fold	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	43	0	0	23	7	20.59	-	-	-	-	112155006	AAGC	-	112155003	7	5	138	1	0	1	0	1	0	0	0	0	764	246	9	0	1308	0	APC	5	112155003	Frame_Shift_Del	DEL	AAGC	TCGA-A7-A3IZ-01A-11D-A20S-09	35890350	112155003	68760257	28	8051										
LMNB1	0	genome.wustl.edu	37	chr5	126172195	126172195	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	cttaataactgtgtactgttCggaaggggttcctcaaattt	9	7	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	126172195	126172195	C	T	SNP	LMNB1	ENST00000460265	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.210	-	-	-	no_errors	LMNB1	HGNC	ENSG00000113368	24	0	0	28	7	20	-	-	-	T	126172195	C	T	126172195	1	4	138	0	1	0	0	0	0	0	0	0	8905	899	31	1		1	LMNB1	5	126172195	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	14017192	126172195	54743065	29	8052										
SPOCK1	0	genome.wustl.edu	37	chr5	136315033	136315033	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttactcaccacagctcacagCaccctgtttcctggagccag	7	16	2	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	136315033	136315033	C	T	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	missense	c.1117	p.A373T	0.062	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	30	0	0	22	4	15.38	-	-	-	T	136315033	C	T	136315033	3	4	138	1	0	0	0	0	1	0	0	0	15170	710	25	4	210	4	SPOCK1	5	136315033	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	10142838	136315033	44600227	30	8053										
ARAP3	0	genome.wustl.edu	37	chr5	141052602	141052602	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tcgctctctgtgcggaacacGaacaccctctggccggtgat	11	14	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	141052602	141052602	G	A	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	silent	c.1071	p.F357	0.995	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	13	0	0	10	4	28.57	-	-	-	A	141052602	G	A	141052602	2	1	138	1	0	0	0	0	0	0	0	1	842	1049	37	1		1	ARAP3	5	141052602	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	4737569	141052602	39862658	31	8054										
FAT2	0	genome.wustl.edu	37	chr5	150925106	150925106	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aatcattcacatctctgacaTgaatgatgacttgggcaggt	9	8	3	4			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	150925106	150925106	T	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.5582	p.H1861L	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	18	0	0	14	8	36.36	-	-	-	A	150925106	T	A	150925106	3	1	138	1	0	0	0	0	1	0	0	0	5736	1464	51	5	7527	5	FAT2	5	150925106	Missense_Mutation	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	9872504	150925106	29990154	32	8055										
UNC5A	0	genome.wustl.edu	37	chr5	176295946	176295946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcacgtcgccgcagcgcctcCgctgctgtcatcgtctacgg	12	17	2	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	176295946	176295946	C	T	SNP	UNC5A	ENST00000509580	human	ensembl	69_37n	1	novel	missense	c.598	p.R200C	0.104	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UNC5A	HGNC	ENSG00000113763	45	0	0	19	10	34.48	-	-	-	T	176295946	C	T	176295946	3	4	138	1	0	0	0	0	1	0	0	0	17088	639	23	1	720	1	UNC5A	5	176295946	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	25370840	176295946	4619314	33	8056										
TBC1D9B	0	genome.wustl.edu	37	chr5	179290741	179290741	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaccaccgagtaggaggacaTggacatgtcgtctttggttt	13	8	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	5	179290741	179290741	T	C	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.3460	p.M1154V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	22	0	0	16	9	36	-	-	-	C	179290741	T	C	179290741	3	2	138	1	0	0	0	0	1	0	0	0	15723	1464	51	5	296	5	TBC1D9B	5	179290741	Missense_Mutation	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	2994795	179290741	1624519	34	8057										
TFAP2A	0	genome.wustl.edu	37	chr6	10415192	10415192	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	acctcgcagtcctcgtacttGatattatccgtcaatttcca	5	13	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	6	10415192	10415192	G	A	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	silent	c.27	p.I9	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	27	0	0	16	7	30.43	-	-	-	A	10415192	G	A	10415192	2	1	138	1	0	0	0	0	0	0	0	1	15882	1280	45	2		2	TFAP2A	6	10415192	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		10415192	160699875	35	8058										
OR2W1	0	genome.wustl.edu	37	chr6	29012878	29012878	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcgacaactcctgacaggatCatctccatttttggatggtt	9	10	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	6	29012878	29012878	C	T	SNP	OR2W1	ENST00000377175	human	ensembl	69_37n	-1	known	missense	c.75	p.M25I	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2W1	HGNC	ENSG00000204704	32	0	0	33	15	31.25	-	-	-	T	29012878	C	T	29012878	3	4	138	1	0	0	0	0	1	0	0	0	11105	826	29	2	891	2	OR2W1	6	29012878	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	18597686	29012878	142102189	36	8059										
CD2AP	0	genome.wustl.edu	37	chr6	47549883	47549883	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	attatttctccacactgagtTatttacactgatttttaaca	3	8	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	6	47549883	47549883	T	C	SNP	CD2AP	ENST00000479857	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD2AP	HGNC	ENSG00000198087	23	0	0	18	5	21.74	-	-	-	C	47549883	T	C	47549883	1	2	138	0	1	0	0	0	0	0	0	0	3023	1769	61	5		5	CD2AP	6	47549883	RNA	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	18537005	47549883	123565184	37	8060										
DST	0	genome.wustl.edu	37	chr6	56323956	56323956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	acatctgagcacacggactgGatttctgaaatgtcaaagtc	9	9	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	6	56323956	56323956	G	A	SNP	DST	ENST00000523292	human	ensembl	69_37n	-1	novel	missense	c.626	p.S209F	1.000	NULL	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DST	HGNC	ENSG00000151914	32	0	0	18	14	43.75	-	-	-	A	56323956	G	A	56323956	3	1	138	1	0	0	0	0	1	0	0	0	4818	1164	41	2	156	2	DST	6	56323956	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	8774073	56323956	114791111	38	8061										
TCP10L2	0	genome.wustl.edu	37	chr6	167591956	167591956	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aaagtcctcccgggagacgtCaagacagaagtccagcaccc	10	14	1	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	6	167591956	167591956	C	T	SNP	TCP10L2	ENST00000283507	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	0.005	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984	72	0	0	37	7	15.91	-	-	-	T	167591956	C	T	167591956	4	4	138	1	0	0	0	0	0	1	0	0	15807	827	29	2	597	2	TCP10L2	6	167591956	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	111268000	167591956	3523111	39	8062										
ABCA13	0	genome.wustl.edu	37	chr7	48547582	48547582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agggtgattggagccaaaagGttgcagcacataagtggcct	14	7	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	48547582	48547582	G	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.13461	p.R4487S	0.039	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	57	0	0	28	27	49.09	-	-	-	T	48547582	G	T	48547582	3	4	138	1	0	0	0	0	1	0	0	0	31	1252	44	4	13488	4	ABCA13	7	48547582	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		48547582	110591081	40	8063										
MLL5	0	genome.wustl.edu	37	chr7	104748202	104748202	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tggaggttggaggaggcttcCgaataagtgagtcaaagtgc	16	5	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	104748202	104748202	C	T	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	nonsense	c.3298	p.R1100*	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	50	0	0	32	11	25.58	-	-	-	T	104748202	C	T	104748202	4	4	138	1	0	0	0	0	0	1	0	0	9695	644	23	1	3376	1	MLL5	7	104748202	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	56200620	104748202	54390461	41	8064										
NAMPT	0	genome.wustl.edu	37	chr7	105910666	105910666	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tatcatggcttagaaattcaCttcttcattctaagatcata	4	8	6	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	105910666	105910666	C	T	SNP	NAMPT	ENST00000393618	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	NAMPT	HGNC	ENSG00000105835	42	0	0	22	3	12	-	-	-	T	105910666	C	T	105910666	1	4	138	0	1	0	0	0	0	0	0	0	10221	580	20	4		4	NAMPT	7	105910666	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	1162464	105910666	53227997	42	8065										
FAM3C	0	genome.wustl.edu	37	chr7	120990532	120990532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ccattagtcttgcttctgggGgatgcatccttccatttcta	8	11	3	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	120990532	120990532	G	A	SNP	FAM3C	ENST00000359943	human	ensembl	69_37n	-1	known	missense	c.667	p.P223S	1.000	NULL	NULL	-	no_errors	FAM3C	HGNC	ENSG00000196937	28	0	0	26	14	35	-	-	-	A	120990532	G	A	120990532	3	1	138	1	0	0	0	0	1	0	0	0	5604	1232	43	4	20	4	FAM3C	7	120990532	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	15079866	120990532	38148131	43	8066										
OPN1SW	0	genome.wustl.edu	37	chr7	128412693	128412693	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atggccttcccacacaccatCttcatgatgcaagcttggaa	7	13	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	128412693	128412693	C	T	SNP	OPN1SW	ENST00000249389	human	ensembl	69_37n	-1	known	silent	c.948	p.K316	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Opsin_blue	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_blue,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617	37	0	0	27	14	34.15	-	-	-	T	128412693	C	T	128412693	2	4	138	1	0	0	0	0	0	0	0	1	10953	912	32	2		2	OPN1SW	7	128412693	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	7422161	128412693	30725970	44	8067										
ZNF777	0	genome.wustl.edu	37	chr7	149152835	149152835	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgggaagccagggggccctgGagagaagtctcttgctcaga	16	9	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	7	149152835	149152835	G	C	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	silent	c.279	p.L93	0.331	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	20	0	0	11	14	56	-	-	-	C	149152835	G	C	149152835	2	2	138	1	0	0	0	0	0	0	0	1	18243	1161	41	2		2	ZNF777	7	149152835	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	20740142	149152835	9985828	45	8068										
ERICH1	0	genome.wustl.edu	37	chr8	565232	565232	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	accacagctggttaaggcagCccctctctctttcctcttct	6	16	4	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	8	565232	565232	C	G	SNP	ERICH1	ENST00000522706	human	ensembl	69_37n	-1	novel	silent	c.1029	p.G343	0.000	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714	66	0	0	31	6	16.22	-	-	-	G	565232	C	G	565232	2	3	138	1	0	0	0	0	0	0	0	1	5267	754	26	4		4	ERICH1	8	565232	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		565232	145798790	46	8069										
FAM82B	0	genome.wustl.edu	37	chr8	87486571	87486571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgaaacttgtaagcaactgaGcagcttctgtctgtatctaa	8	8	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	8	87486571	87486571	G	T	SNP	FAM82B	ENST00000406452	human	ensembl	69_37n	-1	known	missense	c.911	p.A304D	0.993	NULL	NULL	-	no_errors	FAM82B	HGNC	ENSG00000176623	27	0	0	34	4	10.53	-	-	-	T	87486571	G	T	87486571	3	4	138	1	0	0	0	0	1	0	0	0	5677	971	34	4	37	4	FAM82B	8	87486571	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	86921339	87486571	58877451	47	8070										
GLI4	0	genome.wustl.edu	37	chr8	144357213	144357213	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	acctgcgccagtggccccacGtggactcctgccggccccag	12	19	0	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	8	144357213	144357213	G	C	SNP	GLI4	ENST00000521682	human	ensembl	69_37n	1	putative	missense	c.289	p.V97L	0.249	NULL	NULL	-	no_errors	GLI4	HGNC	ENSG00000250571	29	0	0	26	4	13.33	-	-	-	C	144357213	G	C	144357213	3	2	138	1	0	0	0	0	1	0	0	0	6492	1160	40	3		3	GLI4	8	144357213	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	56870642	144357213	2006809	48	8071										
KIAA2026	0	genome.wustl.edu	37	chr9	5968235	5968235	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gtggctctgtagtgactgctCtaatagaatatcccttacaa	8	9	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	5968235	5968235	C	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.1996	p.E666Q	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	16	0	0	15	6	28.57	-	-	-	G	5968235	C	G	5968235	3	3	138	1	0	0	0	0	1	0	0	0	8322	922	32	2	4339	2	KIAA2026	9	5968235	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		5968235	135245196	49	8072			1	13		3	3	467	C		1.152131e-06
KIAA2026	0	genome.wustl.edu	37	chr9	5968452	5968452	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ccagtaacttcccctggactCcttggtttctctaaattttc	5	13	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	5968452	5968452	C	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.1779	p.R593S	0.004	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	40	0	0	29	14	32.56	-	-	-	G	5968452	C	G	5968452	3	3	138	1	0	0	0	0	1	0	0	0	8322	854	30	2	4556	2	KIAA2026	9	5968452	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	217	5968452	135244979	50	8073			1	13		3	3	467	C		1.152131e-06
KIAA2026	0	genome.wustl.edu	37	chr9	5968701	5968701	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	acatagtcacacttcaatttCtccaatttaatccgaggtac	4	11	3	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	5968701	5968701	C	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.1530	p.E510D	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	11	0	0	15	11	42.31	-	-	-	G	5968701	C	G	5968701	3	3	138	1	0	0	0	0	1	0	0	0	8322	912	32	2	4805	2	KIAA2026	9	5968701	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	249	5968701	135244730	51	8074			1	13		3	3	467	C		1.152131e-06
PRUNE2	0	genome.wustl.edu	37	chr9	79259592	79259592	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ggagaagtctagactcacttCatgattttaaataaaatggc	8	6	3	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	79259592	79259592	C	T	SNP	PRUNE2	ENST00000488346	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRUNE2	HGNC	ENSG00000106772	31	0	0	42	7	14.29	-	-	-	T	79259592	C	T	79259592	1	4	138	0	1	0	0	0	0	0	0	0	12721	841	29	2		2	PRUNE2	9	79259592	RNA	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	73290891	79259592	61953839	52	8075										
PTCH1	0	genome.wustl.edu	37	chr9	98209357	98209357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agcctgggcagagtccccctCgggggttccgcccaggccca	14	17	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	98209357	98209357	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.4181	p.R1394Q	0.991	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	37	0	0	26	10	27.78	-	-	-	T	98209357	C	T	98209357	3	4	138	1	0	0	0	0	1	0	0	0	12810	884	31	1	166	1	PTCH1	9	98209357	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	18949765	98209357	43004074	53	8076										
SARDH	0	genome.wustl.edu	37	chr9	136559429	136559429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tggtggctgggtgccaggcgGctgacagtcaggtcactctc	16	11	3	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	136559429	136559429	G	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	missense	c.1872	p.S624R	0.990	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	93	0	0	65	36	35.64	-	-	-	T	136559429	G	T	136559429	3	4	138	1	0	0	0	0	1	0	0	0	13928	1194	42	4	912	4	SARDH	9	136559429	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	38350072	136559429	4654002	54	8077										
C9orf116	0	genome.wustl.edu	37	chr9	138391299	138391299	+	Nonstop_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ggagactcacccgacacaaaTcagtggagctgagaccacaa	10	12	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	9	138391299	138391299	T	A	SNP	C9orf116	ENST00000419770	human	ensembl	69_37n	-1	putative	nonstop	c.66	p.*22C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C9orf116	HGNC	ENSG00000160345	48	0	0	38	5	11.63	-	-	-	A	138391299	T	A	138391299	4	1	138	1	0	0	0	0	0	0	0	0	2475	1450	50	5		5	C9orf116	9	138391299	Nonstop_Mutation	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	1831870	138391299	2822132	55	8078										
SLC25A28	0	genome.wustl.edu	37	chr10	101373387	101373387	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aaccatgctgagactggaaaGcactgacagcagcaaagccc	10	12	0	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	10	101373387	101373387	G	T	SNP	SLC25A28	ENST00000479722	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC25A28	HGNC	ENSG00000155287	26	0	0	29	4	12.12	-	-	-	T	101373387	G	T	101373387	1	4	138	0	1	0	0	0	0	0	0	0	14580	986	34	4		4	SLC25A28	10	101373387	RNA	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		101373387	34161360	56	8079										
ACTR1A	0	genome.wustl.edu	37	chr10	104239100	104239100	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agagaagggaggtgagttggTtaagcgcactgcagtccgcg	17	7	0	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	10	104239100	104239100	T	C	SNP	ACTR1A	ENST00000470322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	ACTR1A	HGNC	ENSG00000138107	24	0	0	17	3	15	-	-	-	C	104239100	T	C	104239100	1	2	138	0	1	0	0	0	0	0	0	0	209	1740	60	5		5	ACTR1A	10	104239100	RNA	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	2865713	104239100	31295647	57	8080										
IGSF22	0	genome.wustl.edu	37	chr11	18731134	18731134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tcatctcaaggatgtagccaGagggtgggtctccctctgca	12	11	4	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	18731134	18731134	G	C	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	missense	c.2798	p.S933C	0.538	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	26	0	0	32	17	34.69	-	-	-	C	18731134	G	C	18731134	3	2	138	1	0	0	0	0	1	0	0	0	7654	942	33	2	1206	2	IGSF22	11	18731134	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		18731134	116275382	58	8081										
MPEG1	0	genome.wustl.edu	37	chr11	58979628	58979628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aaggcaagtccagcagaggcGgtcacggcactacgactgct	13	12	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	58979628	58979628	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	silent	c.711	p.T237	0.001	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	22	0	0	2	8	80	-	-	-	A	58979628	G	A	58979628	2	1	138	1	0	0	0	0	0	0	0	1	9795	1103	39	1		1	MPEG1	11	58979628	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	40248494	58979628	76026888	59	8082										
TMEM216	0	genome.wustl.edu	37	chr11	61165731	61165732	+	Splice_Site	INS	-	-	A													0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttttctttctttctgccatcINSgtatggacaggatttgaagt							TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	61165731	61165732	0	A	INS	TMEM216	ENST00000334888	human	ensembl	69_37n	1	known	splice_site_ins	c.432-2_432-1	e5-1	0.960:1.000	-	-	-	no_errors	TMEM216	HGNC	ENSG00000187049	10	0	0	1	15	93.75	-	-	-	A	61165732	-	A	61165731	8	5	138	1	0	1	1	0	0	0	1	0	16234	898	31	0	448	0	TMEM216	11	61165731	Splice_Site	INS	-	TCGA-A7-A3IZ-01A-11D-A20S-09	2186103	61165731	73840785	60	8083										
ARAP1	0	genome.wustl.edu	37	chr11	72404378	72404378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ggggccacttacccggacctCcttgtagagccgcaagcagc	12	15	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	72404378	72404378	C	T	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.3946	p.E1316K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	59	0	0	97	20	16.95	-	-	-	T	72404378	C	T	72404378	3	4	138	1	0	0	0	0	1	0	0	0	840	864	30	2	434	2	ARAP1	11	72404378	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	11238647	72404378	62602138	61	8084										
BIRC3	0	genome.wustl.edu	37	chr11	102207781	102207781	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgctccttctttaagaaagtGtcctatttgtaggagtacaa	8	7	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	102207781	102207781	G	T	SNP	BIRC3	ENST00000263464	human	ensembl	69_37n	1	known	missense	c.1763	p.C588F	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445	52	0	0	40	5	11.11	-	-	-	T	102207781	G	T	102207781	3	4	138	1	0	0	0	0	1	0	0	0	1441	1377	48	4	1793	4	BIRC3	11	102207781	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	29803403	102207781	32798735	62	8085										
ESAM	0	genome.wustl.edu	37	chr11	124622534	124622534	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcatctctccatttccagagCcactccattttaggggcaga	8	13	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	124622534	124622534	C	T	SNP	ESAM	ENST00000442070	human	ensembl	69_37n	-1	known	nonsense	c.369	p.W123*	0.000	NULL	NULL	-	no_errors	ESAM	HGNC	ENSG00000149564	37	0	0	27	4	12.5	-	-	-	T	124622534	C	T	124622534	4	4	138	1	0	0	0	0	0	1	0	0	5284	754	26	4		4	ESAM	11	124622534	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	22414753	124622534	10383982	63	8086										
FEZ1	0	genome.wustl.edu	37	chr11	125325838	125325838	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ctgctccttctgcttgttctGaacctcaataagcaccgtga	7	13	3	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	11	125325838	125325838	G	A	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	nonsense	c.832	p.Q278*	1.000	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	32	0	0	14	21	60	-	-	-	A	125325838	G	A	125325838	4	1	138	1	0	0	0	0	0	1	0	0	5869	1299	45	2	366	2	FEZ1	11	125325838	Nonsense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	703304	125325838	9680678	64	8087										
LYRM5	0	genome.wustl.edu	37	chr12	25357011	25357011	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	attgtttagaaatatataatCtttctttttgaagctgctgt	6	4	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	12	25357011	25357011	C	G	SNP	LYRM5	ENST00000554266	human	ensembl	69_37n	1	putative	missense	c.115	p.L39V	0.712	NULL	NULL	-	no_errors	LYRM5	HGNC	ENSG00000205707	36	0	0	23	30	56.6	-	-	-	G	25357011	C	G	25357011	3	3	138	1	0	0	0	0	1	0	0	0	9189	928	32	2		2	LYRM5	12	25357011	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		25357011	108494884	65	8088										
CACNB3	0	genome.wustl.edu	37	chr12	49220574	49220574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ctcattcgctcccgggggaaGtcacagatgaagcacctgac	11	13	2	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	12	49220574	49220574	G	T	SNP	CACNB3	ENST00000301050	human	ensembl	69_37n	1	known	missense	c.927	p.K309N	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	37	0	0	33	4	10.53	-	-	-	T	49220574	G	T	49220574	3	4	138	1	0	0	0	0	1	0	0	0	2579	1020	36	4	969	4	CACNB3	12	49220574	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	23863563	49220574	84631321	66	8089										
CKAP2	0	genome.wustl.edu	37	chr13	53035902	53035902	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	aataagaaataagactctatCaagatccatagcatctgaag	6	7	3	4			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	13	53035902	53035902	C	G	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	nonsense	c.944	p.S315*	0.011	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	20	0	0	23	9	28.12	-	-	-	G	53035902	C	G	53035902	4	3	138	1	0	0	0	0	0	1	0	0	3472	838	29	2	958	2	CKAP2	13	53035902	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		53035902	62133976	67	8090										
ARHGAP5	0	genome.wustl.edu	37	chr14	32615468	32615468	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	catatttctttattctcttaGggttatgtaccgaaggactc	7	8	2	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	14	32615468	32615468	G	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	splice_site	c.3866-1	e3-1	1.000	-	-	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	36	0	0	33	4	10.81	-	-	-	T	32615468	G	T	32615468	5	4	138	1	0	0	0	0	0	0	1	0	888	1014	35	4	3875	4	ARHGAP5	14	32615468	Splice_Site	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		32615468	74734072	68	8091										
AHNAK2	0	genome.wustl.edu	37	chr14	105414242	105414242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	catggaggagaggctcccgtCggcctccaccttcggcgcag	14	15	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	14	105414242	105414242	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.7546	p.D2516N	0.572	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	52	0	0	39	30	43.48	-	-	-	T	105414242	C	T	105414242	3	4	138	1	0	0	0	0	1	0	0	0	415	884	31	1	9845	1	AHNAK2	14	105414242	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	72798774	105414242	1935298	69	8092										
OR4N4	0	genome.wustl.edu	37	chr15	22383258	22383258	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttcatctacatgtgccctttCagggccttaccagctgacaa	7	13	3	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	15	22383258	22383258	C	G	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	missense	c.786	p.F262L	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	95	0	0	81	29	26.36	-	-	-	G	22383258	C	G	22383258	3	3	138	1	0	0	0	0	1	0	0	0	11151	825	29	2	788	2	OR4N4	15	22383258	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		22383258	80148134	70	8093										
CHRNA7	0	genome.wustl.edu	37	chr15	32460485	32460485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaggtccgctacattgccaaCcgcttccgctgccaggacga	11	15	0	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	15	32460485	32460485	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	1	known	silent	c.1422	p.N474	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	14	0	0	14	8	36.36	-	-	-	T	32460485	C	T	32460485	2	4	138	1	0	0	0	0	0	0	0	1	3417	506	18	4		4	CHRNA7	15	32460485	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	10077227	32460485	70070907	71	8094										
EXD1	0	genome.wustl.edu	37	chr15	41518645	41518645	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agaaatagaacaagacctttCttcaggacaacaatcttatt	5	8	3	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	15	41518645	41518645	C	T	SNP	EXD1	ENST00000458580	human	ensembl	69_37n	-1	putative	silent	c.129	p.K43	0.996	NULL	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997	20	0	0	16	11	40.74	-	-	-	T	41518645	C	T	41518645	2	4	138	1	0	0	0	0	0	0	0	1	5333	928	32	2		2	EXD1	15	41518645	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	9058160	41518645	61012747	72	8095										
TLN2	0	genome.wustl.edu	37	chr15	63032864	63032864	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atccaagtgatagggaacctCaagaatatctcgatggcatc	9	9	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	15	63032864	63032864	C	G	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	silent	c.3921	p.L1307	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	47	0	0	39	22	36.07	-	-	-	G	63032864	C	G	63032864	2	3	138	1	0	0	0	0	0	0	0	1	16043	813	29	2		2	TLN2	15	63032864	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	21514219	63032864	39498528	73	8096										
USP7	0	genome.wustl.edu	37	chr16	8996318	8996318	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tgcttgcatgggccacaatcGaatttgatcttgtggaaatc	10	8	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	16	8996318	8996318	G	A	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	nonsense	c.1861	p.R621*	1.000	NULL	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	24	0	0	16	8	33.33	-	-	-	A	8996318	G	A	8996318	4	1	138	1	0	0	0	0	0	1	0	0	17185	1066	37	1	1507	1	USP7	16	8996318	Nonsense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		8996318	81358435	74	8097										
SULT1A1	0	genome.wustl.edu	37	chr16	28617552	28617552	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atcttttgaatctcccttttCgggttctgagcagcagaggg	11	9	3	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	16	28617552	28617552	C	G	SNP	SULT1A1	ENST00000314752	human	ensembl	69_37n	-1	known	silent	c.600	p.P200	0.986	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1A1	HGNC	ENSG00000196502	35	0	0	31	6	16.22	-	-	-	G	28617552	C	G	28617552	2	3	138	1	0	0	0	0	0	0	0	1	15463	871	31	3		3	SULT1A1	16	28617552	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	19621234	28617552	61737201	75	8098										
SRCAP	0	genome.wustl.edu	37	chr16	30727792	30727792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	taagggccacggatgtccatCccctccaggtaagtatgatt	10	11	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	16	30727792	30727792	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.2809	p.P937S	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	35	0	0	31	4	11.43	-	-	-	T	30727792	C	T	30727792	3	4	138	1	0	0	0	0	1	0	0	0	15226	855	30	2	2871	2	SRCAP	16	30727792	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	2110240	30727792	59626961	76	8099										
CDH1	0	genome.wustl.edu	37	chr16	68845757	68845757	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tggtcaccactgggctggacCgagaggtcaggggtcaggag	18	9	3	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	16	68845757	68845757	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1003	p.R335*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	34	0	0	8	12	57.14	-	-	-	T	68845757	C	T	68845757	4	4	138	1	0	0	0	0	0	1	0	0	3124	644	23	1	1029	1	CDH1	16	68845757	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	38117965	68845757	21508996	77	8100										
C17orf97	0	genome.wustl.edu	37	chr17	263516	263516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaccccgaggccctcaagggCttccaccccgaccccaaggc	10	20	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	263516	263516	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	silent	c.882	p.G294	0.002	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	62	0	0	51	6	10.53	-	-	-	T	263516	C	T	263516	2	4	138	1	0	0	0	0	0	0	0	1	1909	784	28	4		4	C17orf97	17	263516	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		263516	80931694	78	8101										
HS3ST3A1	0	genome.wustl.edu	37	chr17	13399616	13399616	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	accacctcgcggtcgatctcAggatgggtcctgcccttggt	12	14	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	13399616	13399616	A	T	SNP	HS3ST3A1	ENST00000284110	human	ensembl	69_37n	-1	known	silent	c.1119	p.P373	0.998	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST3A1	HGNC	ENSG00000153976	41	0	0	33	5	13.16	-	-	-	T	13399616	A	T	13399616	2	4	138	1	0	0	0	0	0	0	0	1	7416	175	7	5		5	HS3ST3A1	17	13399616	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	13136100	13399616	67795594	79	8102										
G6PC	0	genome.wustl.edu	37	chr17	41059644	41059644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	taaagccgacctacagatttCggtaagaactcaccactggg	9	11	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	41059644	41059644	C	T	SNP	G6PC	ENST00000253801	human	ensembl	69_37n	1	known	missense	c.445	p.R149W	0.927	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC	HGNC	ENSG00000131482	22	0	0	16	13	44.83	-	-	-	T	41059644	C	T	41059644	3	4	138	1	0	0	0	0	1	0	0	0	6192	898	31	1	455	1	G6PC	17	41059644	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	27660028	41059644	40135566	80	8103										
C17orf53	0	genome.wustl.edu	37	chr17	42225833	42225833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcctgccatccacaaagcggGtatcatgtccgcccaggatg	11	14	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	42225833	42225833	G	A	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	missense	c.662	p.G221D	0.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319	52	0	0	41	6	12.5	-	-	-	A	42225833	G	A	42225833	3	1	138	1	0	0	0	0	1	0	0	0	1877	1261	44	4	672	4	C17orf53	17	42225833	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	1166189	42225833	38969377	81	8104										
ANKRD40	0	genome.wustl.edu	37	chr17	48776840	48776840	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ctgcatacgtcccattttgaGgctccagagacattggtggc	11	11	0	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	48776840	48776840	G	C	SNP	ANKRD40	ENST00000285243	human	ensembl	69_37n	-1	known	missense	c.698	p.P233R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	58	0	0	33	18	35.29	-	-	-	C	48776840	G	C	48776840	3	2	138	1	0	0	0	0	1	0	0	0	668	1000	35	4	420	4	ANKRD40	17	48776840	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	6551007	48776840	32418370	82	8105										
MARCH10	0	genome.wustl.edu	37	chr17	60821780	60821780	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tttgcaggccactgctgtttCtgtctgcttctgtccccaga	9	13	3	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	17	60821780	60821780	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	silent	c.492	p.Q164	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	24	0	0	11	10	47.62	-	-	-	T	60821780	C	T	60821780	2	4	138	1	0	0	0	0	0	0	0	1	9370	912	32	2		2	MARCH10	17	60821780	Silent	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	12044940	60821780	20373430	83	8106										
ZFP161	0	genome.wustl.edu	37	chr18	5291276	5291276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ctgtgtggtgaaaccttttgTgcacatttcacaaacaaatg	8	8	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	18	5291276	5291276	T	C	SNP	ZFP161	ENST00000357006	human	ensembl	69_37n	-1	known	missense	c.931	p.T311A	0.965	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZFP161	HGNC	ENSG00000198081	93	0	0	59	30	33.71	-	-	-	C	5291276	T	C	5291276	3	2	138	1	0	0	0	0	1	0	0	0	17736	1696	59	5	422	5	ZFP161	18	5291276	Missense_Mutation	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09		5291276	72785972	84	8107										
TAF4B	0	genome.wustl.edu	37	chr18	23901109	23901109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agcaacacaggaacgactacGaggccttctagaaaaactga	9	10	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	18	23901109	23901109	G	A	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	missense	c.2078	p.R693Q	1.000	pfam_TAF4,superfamily_Histone-fold	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	11	0	0	17	6	26.09	-	-	-	A	23901109	G	A	23901109	3	1	138	1	0	0	0	0	1	0	0	0	15619	1058	37	1	2120	1	TAF4B	18	23901109	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	18609833	23901109	54176139	85	8108										
ZNF397	0	genome.wustl.edu	37	chr18	32825849	32825849	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	atcaaagaattcacactggtGagaaaccttatgagtgtaat	8	6	2	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	18	32825849	32825849	G	A	SNP	ZNF397	ENST00000330501	human	ensembl	69_37n	1	known	missense	c.1180	p.E394K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	33	0	0	15	12	44.44	-	-	-	A	32825849	G	A	32825849	3	1	138	1	0	0	0	0	1	0	0	0	17979	1291	45	2	1190	2	ZNF397	18	32825849	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	8924740	32825849	45251399	86	8109										
MALT1	0	genome.wustl.edu	37	chr18	56377273	56377273	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gtatataatgatcgagacagTcaagatagcaagaaggtaga	11	4	1	5			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	18	56377273	56377273	T	A	SNP	MALT1	ENST00000348428	human	ensembl	69_37n	1	known	missense	c.894	p.S298R	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Pept_C14_cat,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_DEATH-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Pept_C14_ICE_p20,pfscan_Ig-like	-	no_errors	MALT1	HGNC	ENSG00000172175	18	0	0	23	9	28.12	-	-	-	A	56377273	T	A	56377273	3	1	138	1	0	0	0	0	1	0	0	0	9273	1664	58	5	916	5	MALT1	18	56377273	Missense_Mutation	SNP	T	TCGA-A7-A3IZ-01A-11D-A20S-09	23551424	56377273	21699975	87	8110										
TYK2	0	genome.wustl.edu	37	chr19	10467350	10467350	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	agtgtggccagctgtgggcaGgagggctcgggcagccggtg	21	9	0	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	19	10467350	10467350	G	A	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	silent	c.2511	p.S837	0.019	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	85	0	0	59	26	30.59	-	-	-	A	10467350	G	A	10467350	2	1	138	1	0	0	0	0	0	0	0	1	16907	987	35	4		4	TYK2	19	10467350	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		10467350	48661633	88	8111										
ZNF799	0	genome.wustl.edu	37	chr19	12501313	12501313	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttatgtctatgcaaggaactGagagaagcaaatgctttccc	9	8	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	19	12501313	12501313	G	C	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	silent	c.1899	p.L633	0.008	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	67	0	0	37	31	45.59	-	-	-	C	12501313	G	C	12501313	2	2	138	1	0	0	0	0	0	0	0	1	18259	1277	45	2		2	ZNF799	19	12501313	Silent	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	2033963	12501313	46627670	89	8112										
C19orf54	0	genome.wustl.edu	37	chr19	41255500	41255500	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tctccaggccgaagacatgaCggggagcaggccctgtggca	15	12	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	19	41255500	41255500	C	G	SNP	C19orf54	ENST00000378313	human	ensembl	69_37n	-1	known	missense	c.209	p.R70P	1.000	NULL	NULL	-	no_errors	C19orf54	HGNC	ENSG00000188493	32	0	0	43	7	13.73	-	-	-	G	41255500	C	G	41255500	3	3	138	1	0	0	0	0	1	0	0	0	1954	536	19	3	870	3	C19orf54	19	41255500	Missense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	28754187	41255500	17873483	90	8113										
SIGLEC6	0	genome.wustl.edu	37	chr19	52033094	52033094	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gctccaggaccccggtattgGagatgggggtggcgttcagg	18	9	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	19	52033094	52033094	G	C	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	missense	c.896	p.S299C	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	29	0	0	17	10	37.04	-	-	-	C	52033094	G	C	52033094	3	2	138	1	0	0	0	0	1	0	0	0	14401	1174	41	2	481	2	SIGLEC6	19	52033094	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	10777594	52033094	7095889	91	8114										
LILRB4	0	genome.wustl.edu	37	chr19	55174362	55174362	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ttcccttcctgtgggctgctGatggaacaaccccatgacga	10	13	0	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	19	55174362	55174362	G	C	SNP	LILRB4	ENST00000494796	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	LILRB4	HGNC	ENSG00000186818	21	0	0	11	10	47.62	-	-	-	C	55174362	G	C	55174362	1	2	138	0	1	0	0	0	0	0	0	0	8848	1305	45	2		2	LILRB4	19	55174362	RNA	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	3141268	55174362	3954621	92	8115										
SLC4A11	0	genome.wustl.edu	37	chr20	3218634	3218634	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gcctctccccctctctcctcGgatgccaaggcgggggatct	11	17	3	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	20	3218634	3218634	G	C	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.77	p.P26R	0.000	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	47	0	0	48	8	14.04	-	-	-	C	3218634	G	C	3218634	3	2	138	1	0	0	0	0	1	0	0	0	14741	1116	39	3	2850	3	SLC4A11	20	3218634	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		3218634	59806886	93	8116										
RTEL1	0	genome.wustl.edu	37	chr20	62303913	62303913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tctcttcctcctgtagagccGcagagcacacaacattgacc	7	15	1	3			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	20	62303913	62303913	G	T	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	missense	c.704	p.R235L	1.000	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	34	0	0	26	4	13.33	-	-	-	T	62303913	G	T	62303913	3	4	138	1	0	0	0	0	1	0	0	0	13806	1087	38	3	734	3	RTEL1	20	62303913	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	59085279	62303913	721607	94	8117										
ICOSLG	0	genome.wustl.edu	37	chr21	45648918	45648918	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	tctgggcggtgagctccggtCaaacgtggccttggaaggga	17	9	2	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	21	45648918	45648918	C	G	SNP	ICOSLG	ENST00000407780	human	ensembl	69_37n	-1	known	nonstop	c.908	p.*303S	0.019	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	58	0	0	34	21	38.18	-	-	-	G	45648918	C	G	45648918	4	3	138	1	0	0	0	0	0	0	0	0	7541	837	29	2	4	2	ICOSLG	21	45648918	Nonstop_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09		45648918	2480977	95	8118										
MYH9	0	genome.wustl.edu	37	chr22	36705366	36705366	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gacaaacttgtcagaggactGgtggagcagtgtggcgatgt	16	6	1	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	22	36705366	36705366	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	nonsense	c.1804	p.Q602*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	29	0	0	25	12	32.43	-	-	-	A	36705366	G	A	36705366	4	1	138	1	0	0	0	0	0	1	0	0	10114	1357	47	4	4186	4	MYH9	22	36705366	Nonsense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		36705366	14599200	96	8119										
NRK	0	genome.wustl.edu	37	chrX	105153826	105153826	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	caaaggcgccaacgcagatgGgaagatatctttaatcagca	10	9	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	X	105153826	105153826	G	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	nonsense	c.2196	p.W732*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	43	0	0	25	18	41.86	-	-	-	A	105153826	G	A	105153826	4	1	138	1	0	0	0	0	0	1	0	0	10728	1241	43	4	2243	4	NRK	23	105153826	Nonsense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09		105153826	50116734	97	8120										
MUM1L1	0	genome.wustl.edu	37	chrX	105450896	105450896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ctttcacgggctctttgcttGagtattatgctgctgatatt	9	8	2	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	X	105450896	105450896	G	C	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	missense	c.1471	p.E491Q	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	52	0	0	33	39	53.42	-	-	-	C	105450896	G	C	105450896	3	2	138	1	0	0	0	0	1	0	0	0	10058	1291	45	2	1473	2	MUM1L1	23	105450896	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	297070	105450896	49819664	98	8121										
ZBTB33	0	genome.wustl.edu	37	chrX	119388921	119388921	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	acacaggggagcgaaggtatCagtgtttggcctgtggcaaa	15	7	1	0			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	X	119388921	119388921	C	T	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	nonsense	c.1651	p.Q551*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	61	0	0	45	21	31.82	-	-	-	T	119388921	C	T	119388921	4	4	138	1	0	0	0	0	0	1	0	0	17632	827	29	2	1653	2	ZBTB33	23	119388921	Nonsense_Mutation	SNP	C	TCGA-A7-A3IZ-01A-11D-A20S-09	13938025	119388921	35881639	99	8122										
ATP1B4	0	genome.wustl.edu	37	chrX	119513401	119513401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	ccaagcagtgcctgtgcagtGccaactgaagggcaaaggcg	14	11	0	1			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	X	119513401	119513401	G	T	SNP	ATP1B4	ENST00000218008	human	ensembl	69_37n	1	known	missense	c.986	p.C329F	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B4	HGNC	ENSG00000101892	30	0	0	34	4	10.53	-	-	-	T	119513401	G	T	119513401	3	4	138	1	0	0	0	0	1	0	0	0	1139	1319	46	4	1016	4	ATP1B4	23	119513401	Missense_Mutation	SNP	G	TCGA-A7-A3IZ-01A-11D-A20S-09	124480	119513401	35757159	100	8123										
PRRG3	0	genome.wustl.edu	37	chrX	150868724	150868724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267326732673267	27	1.20141732960411e-05	2.64342857142857	3.56373333333333	2.13214814814815	1	1	17	gaccaatcagaagcaaggaaAgacacccagcctaaggcata	9	11	1	2			TCGA-A7-A3IZ-01A-11D-A20S-09	TCGA-A7-A3IZ-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b27faf2-1488-45a4-b1ff-fec511f1fb58	46160082-58d4-47f5-a49a-505ca987fd79	X	150868724	150868724	A	G	SNP	PRRG3	ENST00000370354	human	ensembl	69_37n	1	known	silent	c.288	p.K96	0.001	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	47	0	0	40	5	11.11	-	-	-	G	150868724	A	G	150868724	2	3	138	1	0	0	0	0	0	0	0	1	12687	87	3	5		5	PRRG3	23	150868724	Silent	SNP	A	TCGA-A7-A3IZ-01A-11D-A20S-09	31355323	150868724	4401836	101	8124										
KLHL17	0	genome.wustl.edu	37	chr1	900505	900505	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	agcagtgtgggtgtggcggtGctggagctgctcaatttccc	16	9	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	900505	900505	G	C	SNP	KLHL17	ENST00000338591	human	ensembl	69_37n	1	known	silent	c.1863	p.V621	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961	128	0	0	61	8	11.43	-	-	-	C	900505	G	C	900505	2	2	139	1	0	0	0	0	0	0	0	1	8425	1306	46	4		4	KLHL17	1	900505	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		900505	248350116	1	8125										
ATAD3B	0	genome.wustl.edu	37	chr1	1421991	1421991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggacgtggcccccatggggcGggaaggcgtgaccgccatgc	18	13	0	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	1421991	1421991	G	A	SNP	ATAD3B	ENST00000308647	human	ensembl	69_37n	1	known	missense	c.1157	p.R386Q	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	52	0	0	36	4	10	-	-	-	A	1421991	G	A	1421991	3	1	139	1	0	0	0	0	1	0	0	0	1078	1116	39	1	1199	1	ATAD3B	1	1421991	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	521486	1421991	247828630	2	8126										
TESK2	0	genome.wustl.edu	37	chr1	45810091	45810091	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tctgggaaacagccatgaccAttacggcctcttgatcagct	9	12	3	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	45810091	45810091	A	G	SNP	TESK2	ENST00000486676	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	27	0	0	31	5	13.89	-	-	-	G	45810091	A	G	45810091	1	3	139	0	1	0	0	0	0	0	0	0	15863	232	8	5		5	TESK2	1	45810091	RNA	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	44388100	45810091	203440530	3	8127										
C1orf87	0	genome.wustl.edu	37	chr1	60456257	60456257	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ctccactctgacaatgcctcCgccactacacttaggctggg	8	16	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	60456257	60456257	C	T	SNP	C1orf87	ENST00000486478	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf87	HGNC	ENSG00000162598	22	0	0	27	4	12.9	-	-	-	T	60456257	C	T	60456257	1	4	139	0	1	0	0	0	0	0	0	0	2084	667	23	1		1	C1orf87	1	60456257	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	14646166	60456257	188794364	4	8128										
KANK4	0	genome.wustl.edu	37	chr1	62739852	62739852	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggtggcgggggtggaatctcGctgatgttgagctcgatttc	17	7	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	62739852	62739852	G	A	SNP	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	silent	c.924	p.S308	0.474	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	30	0	0	21	10	32.26	-	-	-	A	62739852	G	A	62739852	2	1	139	1	0	0	0	0	0	0	0	1	8033	1078	38	1		1	KANK4	1	62739852	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	2283595	62739852	186510769	5	8129										
ABCD3	0	genome.wustl.edu	37	chr1	94983203	94983203	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cagcgtttattatacagtggCagatttctttagctgccaca	8	9	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	94983203	94983203	C	T	SNP	ABCD3	ENST00000464165	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528	49	0	0	34	5	12.82	-	-	-	T	94983203	C	T	94983203	1	4	139	0	1	0	0	0	0	0	0	0	62	725	25	4		4	ABCD3	1	94983203	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	32243351	94983203	154267418	6	8130										
FCGR2C	0	genome.wustl.edu	37	chr1	161565479	161565479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gcaaaattaaaatggagactGggcctgaaaactcctgagca	10	8	0	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	161565479	161565479	G	A	SNP	FCGR2C	ENST00000543859	human	ensembl	69_37n	1	known	silent	c.135	p.L45	0.301	NULL	NULL	-	no_start_codon	FCGR2C	HGNC	ENSG00000244682	20	0	0	15	4	21.05	-	-	-	A	161565479	G	A	161565479	2	1	139	1	0	0	0	0	0	0	0	1	5829	1363	47	4		4	FCGR2C	1	161565479	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	66582276	161565479	87685142	7	8131										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185267114	185267114	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ttattcacaagtgtacctctActaaccataattacatcact	2	11	3	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	185267114	185267114	A	G	SNP	IVNS1ABP	ENST00000459929	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	51	0	0	63	7	10	-	-	-	G	185267114	A	G	185267114	1	3	139	0	1	0	0	0	0	0	0	0	7984	406	14	5		5	IVNS1ABP	1	185267114	RNA	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	23701635	185267114	63983507	8	8132										
HMCN1	0	genome.wustl.edu	37	chr1	185880813	185880813	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ttctgtctttcagggaagctGataaaaaagggatttggcct	11	6	3	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	185880813	185880813	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.801	p.L267	0.998	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	14	0	0	14	4	22.22	-	-	-	A	185880813	G	A	185880813	2	1	139	1	0	0	0	0	0	0	0	1	7271	1277	45	2		2	HMCN1	1	185880813	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	613699	185880813	63369808	9	8133										
CDK18	0	genome.wustl.edu	37	chr1	205501181	205501181	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	agtgccggcatacgctttgcTggcatgcttggatgcccagc	13	12	0	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	205501181	205501181	T	C	SNP	CDK18	ENST00000509056	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266	26	0	0	13	6	31.58	-	-	-	C	205501181	T	C	205501181	1	2	139	0	1	0	0	0	0	0	0	0	3163	1595	55	5		5	CDK18	1	205501181	RNA	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	19620368	205501181	43749440	10	8134										
GALNT2	0	genome.wustl.edu	37	chr1	230417408	230417408	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cccttgtgcggcccatgcccTgggggcggcgtcctgtccct	14	17	0	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	1	230417408	230417408	T	C	SNP	GALNT2	ENST00000485438	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GALNT2	HGNC	ENSG00000143641	42	0	0	36	4	10	-	-	-	C	230417408	T	C	230417408	1	2	139	0	1	0	0	0	0	0	0	0	6263	1595	55	5		5	GALNT2	1	230417408	RNA	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	24916227	230417408	18833213	11	8135										
ARHGAP25	0	genome.wustl.edu	37	chr2	69002760	69002760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tcctccaggaagcaccaggaCgggcactgtggagtttccta	12	12	0	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	2	69002760	69002760	C	T	SNP	ARHGAP25	ENST00000473986	human	ensembl	69_37n	1	known	missense	c.200	p.T67M	0.000	NULL	NULL	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	44	0	0	34	4	10.53	-	-	-	T	69002760	C	T	69002760	3	4	139	1	0	0	0	0	1	0	0	0	876	551	19	1		1	ARHGAP25	2	69002760	Missense_Mutation	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		69002760	174196613	12	8136										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73302777	73302777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ctggctcagctcccgctcccGctgcaggagcaggctgatga	13	15	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	2	73302777	73302777	G	A	SNP	RAB11FIP5	ENST00000258098	human	ensembl	69_37n	-1	known	missense	c.1834	p.R612W	1.000	pfam_Rab-bd_FIP-RBD	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	32	0	0	12	6	31.58	-	-	-	A	73302777	G	A	73302777	3	1	139	1	0	0	0	0	1	0	0	0	12980	1086	38	1	131	1	RAB11FIP5	2	73302777	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	4300017	73302777	169896596	13	8137										
STEAP3	0	genome.wustl.edu	37	chr2	120015164	120015164	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cctcggagcttctgctgctcActtgtgcctgtgtccacccc	9	17	2	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	2	120015164	120015164	A	G	SNP	STEAP3	ENST00000409811	human	ensembl	69_37n	1	known	silent	c.1317	p.S439	0.000	NULL	pfam_NADP_OxRdtase_F420,pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107	45	0	0	36	4	10	-	-	-	G	120015164	A	G	120015164	2	3	139	1	0	0	0	0	0	0	0	1	15370	174	6	5		5	STEAP3	2	120015164	Silent	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	46712387	120015164	123184209	14	8138										
POTEF	0	genome.wustl.edu	37	chr2	130832873	130832873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	aagacagcccggggggcatcGtcgcccgcaaagccggcctt	14	15	0	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	47	0	0	41	10	19.61	-	-	-	A	130832873	G	A	130832873	2	1	139	1	0	0	0	0	0	0	0	1	12339	1136	40	1		1	POTEF	2	130832873	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	10817709	130832873	112366500	15	8139										
FSIP2	0	genome.wustl.edu	37	chr2	186625770	186625770	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	agttcaaataattttacgaaAaaaaactcagcttctgttgt	5	6	3	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	2	186625770	186625770	A	G	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	silent	c.1401	p.K467	0.002	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	40	0	0	26	5	16.13	-	-	-	G	186625770	A	G	186625770	2	3	139	1	0	0	0	0	0	0	0	1	6124	11	1	5		5	FSIP2	2	186625770	Silent	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	55792897	186625770	56573603	16	8140										
JAGN1	0	genome.wustl.edu	37	chr3	9932337	9932337	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cgggggcgcaaatagggtcaGtgggccgcttggcggtgtcg	20	9	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	9932337	9932337	G	C	SNP	JAGN1	ENST00000489724	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JAGN1	HGNC	ENSG00000171135	78	0	0	50	10	16.67	-	-	-	C	9932337	G	C	9932337	1	2	139	0	1	0	0	0	0	0	0	0	7990	1044	36	4		4	JAGN1	3	9932337	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		9932337	188090093	17	8141										
SATB1	0	genome.wustl.edu	37	chr3	18392819	18392819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gctcacctgaggagcagcacCgagccatggtgcaggggtcg	16	12	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	18392819	18392819	C	T	SNP	SATB1	ENST00000476178	human	ensembl	69_37n	-1	putative	missense	c.8	p.R3Q	0.998	prints_Antifreeze_1	prints_Antifreeze_1	-	no_errors	SATB1	HGNC	ENSG00000182568	35	0	0	22	4	15.38	-	-	-	T	18392819	C	T	18392819	3	4	139	1	0	0	0	0	1	0	0	0	13940	667	23	1		1	SATB1	3	18392819	Missense_Mutation	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	8460482	18392819	179629611	18	8142										
GADL1	0	genome.wustl.edu	37	chr3	30769729	30769729	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tgcctctgggggaccaaagcCacagctacatgtctttaccc	9	14	2	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	30769729	30769729	C	A	SNP	GADL1	ENST00000498387	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GADL1	HGNC	ENSG00000144644	23	0	0	20	9	31.03	-	-	-	A	30769729	C	A	30769729	1	1	139	0	1	0	0	0	0	0	0	0	6234	609	21	4		4	GADL1	3	30769729	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	12376910	30769729	167252701	19	8143										
DNAH12	0	genome.wustl.edu	37	chr3	57414071	57414071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	aactcataaactcactaaatGtacattgagtttttagaggc	6	7	2	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	57414071	57414071	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.5288	p.T1763I	0.004	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	46	0	0	33	4	10.81	-	-	-	A	57414071	G	A	57414071	3	1	139	1	0	0	0	0	1	0	0	0	4636	1377	48	4	4090	4	DNAH12	3	57414071	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	26644342	57414071	140608359	20	8144										
SUCLG2	0	genome.wustl.edu	37	chr3	67411166	67411166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ttcttgttttatgtgcatatAacttccttttttttccataa	3	7	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	67411166	67411166	A	G	SNP	SUCLG2	ENST00000493112	human	ensembl	69_37n	-1	novel	missense	c.1210	p.Y404H	0.001	pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLG2	HGNC	ENSG00000172340	53	0	0	47	6	11.32	-	-	-	G	67411166	A	G	67411166	3	3	139	1	0	0	0	0	1	0	0	0	15456	362	13	5	116	5	SUCLG2	3	67411166	Missense_Mutation	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	9997095	67411166	130611264	21	8145										
B3GNT5	0	genome.wustl.edu	37	chr3	182987515	182987515	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	acacctactctacgaaacacGaagttctatggtctcgaaga	7	11	3	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	3	182987515	182987515	G	A	SNP	B3GNT5	ENST00000488301	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	B3GNT5	HGNC	ENSG00000176597	43	0	0	37	7	15.91	-	-	-	A	182987515	G	A	182987515	1	1	139	0	1	0	0	0	0	0	0	0	1264	1073	37	1		1	B3GNT5	3	182987515	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	115576349	182987515	15034915	22	8146										
WDR1	0	genome.wustl.edu	37	chr4	10076860	10076860	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tacagacaccctgcagagacGagggtcatgactgggccctc	12	13	1	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	4	10076860	10076860	G	A	SNP	WDR1	ENST00000515743	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR1	HGNC	ENSG00000071127	54	0	0	40	5	11.11	-	-	-	A	10076860	G	A	10076860	1	1	139	0	1	0	0	0	0	0	0	0	17369	1073	37	1		1	WDR1	4	10076860	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		10076860	181077416	23	8147										
WDR17	0	genome.wustl.edu	37	chr4	177041169	177041169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	agcttcttgtctgatatctgTatgttcagatggcatacaca	8	8	4	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	4	177041169	177041169	T	C	SNP	WDR17	ENST00000505894	human	ensembl	69_37n	1	novel	missense	c.152	p.V51A	0.951	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon	WDR17	HGNC	ENSG00000150627	65	0	0	26	12	31.58	-	-	-	C	177041169	T	C	177041169	3	2	139	1	0	0	0	0	1	0	0	0	17374	1644	57	5	545	5	WDR17	4	177041169	Missense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	166964309	177041169	14113107	24	8148										
MICA	0	genome.wustl.edu	37	chr6	31379931	31379931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggtggccaccaggatttgccGaggagaggagcagaggttca	17	8	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	6	31379931	31379931	G	A	SNP	MICA	ENST00000364810	human	ensembl	69_37n	1	known	missense	c.821	p.R274Q	0.001	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	MICA	HGNC	ENSG00000204520	49	0	0	31	5	13.89	-	-	-	A	31379931	G	A	31379931	3	1	139	1	0	0	0	0	1	0	0	0	9639	1058	37	1	835	1	MICA	6	31379931	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		31379931	139735136	25	8149										
HLA-DMA	0	genome.wustl.edu	37	chr6	32920165	32920165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	caaagacagcaatgggagaaGtgaccccataactgcataaa	9	9	0	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	6	32920165	32920165	G	A	SNP	HLA-DMA	ENST00000456800	human	ensembl	69_37n	-1	known	missense	c.74	p.T25I	0.000	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	HLA-DMA	HGNC	ENSG00000204257	55	0	0	40	6	13.04	-	-	-	A	32920165	G	A	32920165	3	1	139	1	0	0	0	0	1	0	0	0	7249	1044	36	4		4	HLA-DMA	6	32920165	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	1540234	32920165	138194902	26	8150										
NFE2L3	0	genome.wustl.edu	37	chr7	26224737	26224737	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggctactacccagaacccagTaagctttgtcacttggatca	8	12	2	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	26224737	26224737	T	C	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	silent	c.1419	p.S473	0.000	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	63	0	0	34	24	41.38	-	-	-	C	26224737	T	C	26224737	2	2	139	1	0	0	0	0	0	0	0	1	10441	1635	57	5		5	NFE2L3	7	26224737	Silent	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09		26224737	132913926	27	8151										
CRHR2	0	genome.wustl.edu	37	chr7	30728472	30728472	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cggcaaccagagaatgtttaCcaccttctgccagtttccct	7	14	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	30728472	30728472	C	G	SNP	CRHR2	ENST00000462882	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	CRHR2	HGNC	ENSG00000106113	58	0	0	36	4	10	-	-	-	G	30728472	C	G	30728472	1	3	139	0	1	0	0	0	0	0	0	0	3902	522	18	4		4	CRHR2	7	30728472	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	4503735	30728472	128410191	28	8152										
CRHR2	0	genome.wustl.edu	37	chr7	30728557	30728557	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tgccagcccagctgacttccAtcgtgggagctgggaatggg	15	11	0	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	30728557	30728557	A	G	SNP	CRHR2	ENST00000462882	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CRHR2	HGNC	ENSG00000106113	57	0	0	28	5	15.15	-	-	-	G	30728557	A	G	30728557	1	3	139	0	1	0	0	0	0	0	0	0	3902	232	8	5		5	CRHR2	7	30728557	RNA	SNP	A	TCGA-A7-A3J0-01A-11D-A20S-09	85	30728557	128410106	29	8153										
POM121	0	genome.wustl.edu	37	chr7	72413874	72413874	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	agtgggagctttgggatcaaTgtggccaccccaggctccag	14	11	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	72413874	72413874	T	C	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	silent	c.3342	p.N1114	0.018	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	71	0	0	49	7	12.5	-	-	-	C	72413874	T	C	72413874	2	2	139	1	0	0	0	0	0	0	0	1	12313	1461	51	5		5	POM121	7	72413874	Silent	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	41685317	72413874	86724789	30	8154										
TES	0	genome.wustl.edu	37	chr7	115892650	115892650	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ctcctaagtagaaagcaaatTattcctaccacagggtgtta	7	9	0	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	115892650	115892650	T	G	SNP	TES	ENST00000393484	human	ensembl	69_37n	1	putative	nonsense	c.557	p.L186*	0.001	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TES	HGNC	ENSG00000135269	25	0	0	22	5	18.52	-	-	-	G	115892650	T	G	115892650	4	3	139	1	0	0	0	0	0	1	0	0	15860	1769	61	5		5	TES	7	115892650	Nonsense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	43478776	115892650	43246013	31	8155										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138764145	138764145	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	acatcagtagttttatccacTacttgactagagccatttgg	7	9	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	7	138764145	138764145	T	C	SNP	ZC3HAV1	ENST00000464606	human	ensembl	69_37n	-1	novel	silent	c.1542	p.V514	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	48	0	0	24	4	14.29	-	-	-	C	138764145	T	C	138764145	2	2	139	1	0	0	0	0	0	0	0	1	17671	1537	53	5		5	ZC3HAV1	7	138764145	Silent	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	22871495	138764145	20374518	32	8156										
ALDH1A1	0	genome.wustl.edu	37	chr9	75545879	75545879	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gaagcatccatagtacgccaCggggatccaatctgaaaagc	10	11	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	9	75545879	75545879	C	T	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	silent	c.228	p.P76	0.961	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	17	0	0	17	5	22.73	-	-	-	T	75545879	C	T	75545879	2	4	139	1	0	0	0	0	0	0	0	1	490	523	19	1		1	ALDH1A1	9	75545879	Silent	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		75545879	65667552	33	8157										
C9orf89	0	genome.wustl.edu	37	chr9	95874070	95874070	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tcggcctggcggccccaggaGgcagcagcaaccttgggctt	15	14	0	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	9	95874070	95874070	G	C	SNP	C9orf89	ENST00000488630	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf89	HGNC	ENSG00000165233	48	0	0	30	6	16.67	-	-	-	C	95874070	G	C	95874070	1	2	139	0	1	0	0	0	0	0	0	0	2528	1015	35	4		4	C9orf89	9	95874070	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	20328191	95874070	45339361	34	8158										
NUP214	0	genome.wustl.edu	37	chr9	134021677	134021677	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gccattgaagtcctcagtctTgccctcaccatcaggtatga	8	13	4	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	9	134021677	134021677	T	C	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.1931	p.L644S	0.192	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	54	0	0	46	17	26.98	-	-	-	C	134021677	T	C	134021677	3	2	139	1	0	0	0	0	1	0	0	0	10835	1821	63	5	1981	5	NUP214	9	134021677	Missense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	38147607	134021677	7191754	35	8159										
FAM22D	0	genome.wustl.edu	37	chr10	89124914	89124914	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gcccccagacccgggcctccTgagctacactgacaagctgt	10	17	0	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	10	89124914	89124914	T	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1472	p.L491Q	0.092	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	19	0	0	13	5	27.78	-	-	-	A	89124914	T	A	89124914	3	1	139	1	0	0	0	0	1	0	0	0	5586	1580	55	5	1490	5	FAM22D	10	89124914	Missense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09		89124914	46409833	36	8160										
TRIM6	0	genome.wustl.edu	37	chr11	5617987	5617987	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gaacggaacggagcagagtcGtgcgtggttgagtttagata	16	5	0	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	11	5617987	5617987	G	A	SNP	TRIM6	ENST00000511284	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM6	HGNC	ENSG00000121236	18	0	0	15	4	21.05	-	-	-	A	5617987	G	A	5617987	1	1	139	0	1	0	0	0	0	0	0	0	16629	1160	40	1		1	TRIM6	11	5617987	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		5617987	129388529	37	8161										
ANO3	0	genome.wustl.edu	37	chr11	26484602	26484602	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggaaaagataaggattacacGgatgaatcagaacacgctac	10	7	1	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	11	26484602	26484602	G	A	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	silent	c.339	p.T113	0.669	NULL	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	76	0	0	57	25	30.49	-	-	-	A	26484602	G	A	26484602	2	1	139	1	0	0	0	0	0	0	0	1	697	1103	39	1		1	ANO3	11	26484602	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	20866615	26484602	108521914	38	8162										
TIGD3	0	genome.wustl.edu	37	chr11	65124038	65124038	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ttggcacagtttgaccgggaCatgggacagcagggccgaca	15	10	0	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	11	65124038	65124038	C	T	SNP	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	silent	c.759	p.D253	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	64	0	0	57	14	19.72	-	-	-	T	65124038	C	T	65124038	2	4	139	1	0	0	0	0	0	0	0	1	15992	477	17	4		4	TIGD3	11	65124038	Silent	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	38639436	65124038	69882478	39	8163										
MTL5	0	genome.wustl.edu	37	chr11	68475807	68475807	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tcaatcccttagatttaaacTcagtgtggagaatctgtgat	8	7	3	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	11	68475807	68475807	T	A	SNP	MTL5	ENST00000255087	human	ensembl	69_37n	-1	known	missense	c.1496	p.E499V	1.000	NULL	pfam_TCR,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749	43	0	0	28	7	20	-	-	-	A	68475807	T	A	68475807	3	1	139	1	0	0	0	0	1	0	0	0	10008	1551	54	5	34	5	MTL5	11	68475807	Missense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	3351769	68475807	66530709	40	8164										
PRMT8	0	genome.wustl.edu	37	chr12	3702789	3702789	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tgtgcggtggtgtgcgtgtgCgtgcatgtgtgaatgtgagc	19	5	0	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	12	3702789	3702789	C	A	SNP	PRMT8	ENST00000261252	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.223	-	-	-	no_errors	PRMT8	HGNC	ENSG00000111218	46	0	0	34	4	10.53	-	-	-	A	3702789	C	A	3702789	1	1	139	0	1	0	0	0	0	0	0	0	12623	783	27	3		3	PRMT8	12	3702789	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		3702789	130149106	41	8165										
MCF2L	0	genome.wustl.edu	37	chr13	113698785	113698785	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tgcagaattctgattttcatGtaaacctaggacatgttcag	8	7	3	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	13	113698785	113698785	G	A	SNP	MCF2L	ENST00000480321	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCF2L	HGNC	ENSG00000126217	9	0	0	6	4	40	-	-	-	A	113698785	G	A	113698785	1	1	139	0	1	0	0	0	0	0	0	0	9450	1392	48	4		4	MCF2L	13	113698785	RNA	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		113698785	1471093	42	8166										
MCF2L	0	genome.wustl.edu	37	chr13	113708697	113708697	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ttttaggagtgatggcctcaCgcacacggcagcggccattc	12	12	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	13	113708697	113708697	C	T	SNP	MCF2L	ENST00000494043	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MCF2L	HGNC	ENSG00000126217	54	0	0	50	6	10.71	-	-	-	T	113708697	C	T	113708697	1	4	139	0	1	0	0	0	0	0	0	0	9450	551	19	1		1	MCF2L	13	113708697	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	9912	113708697	1461181	43	8167										
SYT16	0	genome.wustl.edu	37	chr14	62550943	62550943	+	Silent	SNP	G	G	T													0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tctccgctcagcccatctgcGgtttctcacagtgatagtac							TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	14	62550943	62550943	G	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	silent	c.1464	p.A488	0.270	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	53	0	0	24	10	29.41	-	-	-	T	62550943	G	T	62550943	2	4	139	1	0	0	0	0	0	0	0	1	15564	1103	39	3		3	SYT16	14	62550943	Silent	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09		62550943	44798597	44	8168	62	2								
SYT16	0	genome.wustl.edu	37	chr14	62550944	62550944	+	Missense_Mutation	SNP	G	G	T													0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ctccgctcagcccatctgcgGtttctcacagtgatagtact							TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	14	62550944	62550944	G	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	missense	c.1465	p.V489F	0.982	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	53	0	0	24	10	29.41	-	-	-	T	62550944	G	T	62550944	3	4	139	1	0	0	0	0	1	0	0	0	15564	1261	44	4	1483	4	SYT16	14	62550944	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	1	62550944	44798596	45	8169	62	2								
C14orf43	0	genome.wustl.edu	37	chr14	74196792	74196792	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cctttggaacttagtctgccTaccacacccaccaaggcaag	7	15	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	14	74196792	74196792	T	C	SNP	C14orf43	ENST00000451078	human	ensembl	69_37n	-1	known	missense	c.1306	p.R436G	0.000	NULL	NULL	-	no_start_codon	C14orf43	HGNC	ENSG00000156030	42	0	0	33	6	15.38	-	-	-	C	74196792	T	C	74196792	3	2	139	1	0	0	0	0	1	0	0	0	1786	1537	53	5		5	C14orf43	14	74196792	Missense_Mutation	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	11645848	74196792	33152748	46	8170										
CALM1	0	genome.wustl.edu	37	chr14	90870839	90870839	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gaagcagatattgatggagaCggacaagtcaactatgaagg	13	5	1	4			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	14	90870839	90870839	C	T	SNP	CALM1	ENST00000356978	human	ensembl	69_37n	1	known	silent	c.402	p.D134	0.948	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	CALM1	HGNC	ENSG00000198668	32	0	0	25	10	28.57	-	-	-	T	90870839	C	T	90870839	2	4	139	1	0	0	0	0	0	0	0	1	2609	535	19	1		1	CALM1	14	90870839	Silent	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	16674047	90870839	16478701	47	8171										
LEO1	0	genome.wustl.edu	37	chr15	52258527	52258527	+	Frame_Shift_Del	DEL	T	T	-													0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ctgatctttcagagtgattaTcactaccactatgatgtgaa							TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	15	52258527	52258527	T	-	DEL	LEO1	ENST00000299601	human	ensembl	69_37n	-1	known	frame_shift_del	c.233	p.D78fs	1.000	NULL	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477	49	0	0	27	12	30	-	-	-	-	52258527	T	-	52258527	7	5	139	1	0	1	0	1	0	0	0	0	8780	1435	50	0	1811	0	LEO1	15	52258527	Frame_Shift_Del	DEL	T	TCGA-A7-A3J0-01A-11D-A20S-09		52258527	50272865	48	8172										
KIAA1199	0	genome.wustl.edu	37	chr15	81225627	81225627	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggagagcctgggccctggttCaaccagctggacatggatgg	16	10	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	15	81225627	81225627	C	T	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	silent	c.2835	p.F945	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	62	0	0	32	4	11.11	-	-	-	T	81225627	C	T	81225627	2	4	139	1	0	0	0	0	0	0	0	1	8265	825	29	2		2	KIAA1199	15	81225627	Silent	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	28967100	81225627	21305765	49	8173										
ORMDL3	0	genome.wustl.edu	37	chr17	38078892	38078892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cagggacacggtgttgagcaCaaaatggatctggtcgtact	13	8	1	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	17	38078892	38078892	C	T	SNP	ORMDL3	ENST00000304046	human	ensembl	69_37n	-1	known	missense	c.373	p.V125M	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL3	HGNC	ENSG00000172057	42	0	0	24	10	29.41	-	-	-	T	38078892	C	T	38078892	3	4	139	1	0	0	0	0	1	0	0	0	11344	478	17	4	92	4	ORMDL3	17	38078892	Missense_Mutation	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		38078892	43116318	50	8174										
JUP	0	genome.wustl.edu	37	chr17	39777867	39777867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tgctgaagaaccaatcctcgGcatccttgcggttcttctct	8	13	2	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	17	39777867	39777867	G	A	SNP	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	missense	c.1289	p.A430V	0.905	pfam_F,superfamily_Prefoldin	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	111	0	0	60	29	32.58	-	-	-	A	39777867	G	A	39777867	3	1	139	1	0	0	0	0	1	0	0	0	8026	1203	42	4		4	JUP	17	39777867	Missense_Mutation	SNP	G	TCGA-A7-A3J0-01A-11D-A20S-09	1698975	39777867	41417343	51	8175										
DLX4	0	genome.wustl.edu	37	chr17	48046696	48046696	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	aagaggctcagagagacactTtctccgggatcttaagtgtg	12	8	3	3			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	17	48046696	48046696	T	G	SNP	DLX4	ENST00000505318	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.566	-	-	-	no_errors	DLX4	HGNC	ENSG00000108813	10	0	0	5	6	54.55	-	-	-	G	48046696	T	G	48046696	1	3	139	0	1	0	0	0	0	0	0	0	4609	1856	64	5		5	DLX4	17	48046696	RNA	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09	8268829	48046696	33148514	52	8176										
LAMA3	0	genome.wustl.edu	37	chr18	21534701	21534701	+	RNA	SNP	C	C	A													0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	cagctcgagatcattcttcaCtcaggacacaaaccagacag							TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	18	21534701	21534701	C	A	SNP	LAMA3	ENST00000588770	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMA3	HGNC	ENSG00000053747	22	0	0	27	5	15.62	-	-	-	A	21534701	C	A	21534701	1	1	139	0	1	0	0	0	0	0	0	0	8661	580	20	4		4	LAMA3	18	21534701	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		21534701	56542547	53	8177	63	2								
LAMA3	0	genome.wustl.edu	37	chr18	21534703	21534703	+	RNA	SNP	C	C	T													0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gctcgagatcattcttcactCaggacacaaaccagacaggt							TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	18	21534703	21534703	C	T	SNP	LAMA3	ENST00000588770	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMA3	HGNC	ENSG00000053747	23	0	0	26	5	16.13	-	-	-	T	21534703	C	T	21534703	1	4	139	0	1	0	0	0	0	0	0	0	8661	841	29	2		2	LAMA3	18	21534703	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	2	21534703	56542545	54	8178	63	2								
TCEB3B	0	genome.wustl.edu	37	chr18	44561516	44561516	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gtctccgccaggatgtctgcCgtcatgggcaaggcggagag	16	11	3	1			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	18	44561516	44561516	C	G	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	silent	c.120	p.T40	0.000	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	61	0	0	25	7	21.88	-	-	-	G	44561516	C	G	44561516	2	3	139	1	0	0	0	0	0	0	0	1	15777	639	23	3		3	TCEB3B	18	44561516	Silent	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	23026813	44561516	33515732	55	8179										
CXXC1	0	genome.wustl.edu	37	chr18	47813835	47813835	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tcattctgcccatagactccCgccgttcagtccacagactc	6	17	3	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	18	47813835	47813835	C	T	SNP	CXXC1	ENST00000587396	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CXXC1	HGNC	ENSG00000154832	100	0	0	62	8	11.43	-	-	-	T	47813835	C	T	47813835	1	4	139	0	1	0	0	0	0	0	0	0	4128	667	23	1		1	CXXC1	18	47813835	RNA	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09	3252319	47813835	30263413	56	8180										
SBNO2	0	genome.wustl.edu	37	chr19	1122920	1122920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	gcgtaggtgatggcctctagCtgcagggcagacagggcccc	16	12	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	19	1122920	1122920	C	A	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	missense	c.753	p.Q251H	1.000	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	29	0	0	9	5	35.71	-	-	-	A	1122920	C	A	1122920	3	1	139	1	0	0	0	0	1	0	0	0	13950	796	28	4	3447	4	SBNO2	19	1122920	Missense_Mutation	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		1122920	58006063	57	8181										
NINL	0	genome.wustl.edu	37	chr20	25433536	25433536	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	tttgcaataaacaccatcatTcctgagtccacagataaggt	6	10	1	2			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	20	25433536	25433536	T	C	SNP	NINL	ENST00000464285	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.621	-	-	-	no_errors	NINL	HGNC	ENSG00000101004	51	0	0	23	6	20.69	-	-	-	C	25433536	T	C	25433536	1	2	139	0	1	0	0	0	0	0	0	0	10492	1798	62	5		5	NINL	20	25433536	RNA	SNP	T	TCGA-A7-A3J0-01A-11D-A20S-09		25433536	37591984	58	8182										
SGSM3	0	genome.wustl.edu	37	chr22	40800334	40800334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0350877192982456	2	1	0.512586805555556	0	0.630876068376068	0.333333333333333	0.930327025915261	0	ggctgcggtggcaggcccacCtggagttcacccataaccac	12	15	1	0			TCGA-A7-A3J0-01A-11D-A20S-09	TCGA-A7-A3J0-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fe4edb4-9780-457f-95a5-346ca22eac20	e7ddf4f3-409f-496f-be72-e3115f128136	22	40800334	40800334	C	G	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	missense	c.241	p.L81V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	54	0	0	46	7	13.21	-	-	-	G	40800334	C	G	40800334	3	3	139	1	0	0	0	0	1	0	0	0	14312	680	24	4	255	4	SGSM3	22	40800334	Missense_Mutation	SNP	C	TCGA-A7-A3J0-01A-11D-A20S-09		40800334	10504232	59	8183										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939782	12939782	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	aggagaatttggagaggcacAagactgtaattggtcagtct	13	5	2	3			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	1	12939782	12939782	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	39	0	0	44	6	12	-	-	-	G	12939782	A	G	12939782	2	3	140	1	0	0	0	0	0	0	0	1	12517	117	5	5		5	PRAMEF4	1	12939782	Silent	SNP	A	TCGA-A7-A3J1-01A-11D-A20S-09		12939782	236310839	1	8184										
YY1AP1	0	genome.wustl.edu	37	chr1	155644863	155644863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	gttgcaggtggcaagaaggtGgatttgtgtcaagagctgaa	16	4	1	3			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	1	155644863	155644863	G	A	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.763	p.H255Y	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	50	0	0	51	27	34.62	-	-	-	A	155644863	G	A	155644863	3	1	140	1	0	0	0	0	1	0	0	0	17605	1348	47	4	1927	4	YY1AP1	1	155644863	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09	142705081	155644863	93605758	2	8185										
MGAT4A	0	genome.wustl.edu	37	chr2	99279812	99279812	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	acaagggcatacctgtaataCtgtaattcattttcacatgg	7	8	2	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	99279812	99279812	C	A	SNP	MGAT4A	ENST00000414521	human	ensembl	69_37n	-1	known	missense	c.11	p.S4I	0.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	18	0	0	10	3	23.08	-	-	-	A	99279812	C	A	99279812	3	1	140	1	0	0	0	0	1	0	0	0	9616	565	20	4	1343	4	MGAT4A	2	99279812	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09		99279812	143919561	3	8186										
ALS2CR11	0	genome.wustl.edu	37	chr2	202357559	202357559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	taagtcctccttggtgatatGtcctgattctgaaagtcttt	8	8	2	3			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	202357559	202357559	G	T	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.3505	p.H1169N	0.981	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	22	0	0	16	3	15.79	-	-	-	T	202357559	G	T	202357559	3	4	140	1	0	0	0	0	1	0	0	0	552	1377	48	4	1965	4	ALS2CR11	2	202357559	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09	103077747	202357559	40841814	4	8187										
MTERFD2	0	genome.wustl.edu	37	chr2	242026649	242026649	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	acatgacctttatgttagacAttttaatacatcaataggag	6	6	1	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	242026649	242026649	A	G	SNP	MTERFD2	ENST00000455202	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTERFD2	HGNC	ENSG00000122085	22	0	0	12	3	20	-	-	-	G	242026649	A	G	242026649	1	3	140	0	1	0	0	0	0	0	0	0	9992	232	8	5		5	MTERFD2	2	242026649	RNA	SNP	A	TCGA-A7-A3J1-01A-11D-A20S-09	39669090	242026649	1172724	5	8188										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	21	8	27.59	-	-	-	A	178921553	T	A	178921553	3	1	140	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-A7-A3J1-01A-11D-A20S-09		178921553	19100877	6	8189										
VEGFC	0	genome.wustl.edu	37	chr4	177713372	177713373	+	In_Frame_Ins	INS	-	-	GGC													0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	aggtcgagtccggactcgaaINSggcggcggcggcggcgggcg							TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	4	177713372	177713373	-	GGC	INS	VEGFC	ENST00000280193	human	ensembl	69_37n	-1	known	in_frame_ins	c.94_93	p.31in_frame_insA	0.904:0.984	NULL	pfam_PD_growth_factor,pfam_CXCXC_repeat,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFC	HGNC	ENSG00000150630	18	0	0	29	13	30.95	-	-	-	GGC	177713373	-	GGC	177713372	7	5	140	1	0	1	1	0	0	0	0	0	17249	72	3	0	1196	0	VEGFC	4	177713372	In_Frame_Ins	INS	-	TCGA-A7-A3J1-01A-11D-A20S-09		177713372	13440904	7	8190										
ADAMTS2	0	genome.wustl.edu	37	chr5	178566948	178566948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ccgtgccacaggtacgtgagCaggagccaaacggactccaa	12	13	0	1			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	5	178566948	178566948	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.1718	p.C573Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	31	0	0	22	9	29.03	-	-	-	T	178566948	C	T	178566948	3	4	140	1	0	0	0	0	1	0	0	0	265	710	25	4	1965	4	ADAMTS2	5	178566948	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09		178566948	2348312	8	8191										
SLC35F1	0	genome.wustl.edu	37	chr6	118475629	118475629	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	gagatgttaatctctgtggcCctaggccaggtgttatccct	11	10	1	1			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	6	118475629	118475629	C	T	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	silent	c.195	p.A65	0.996	pfam_DUF914_euk	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	49	0	0	32	16	33.33	-	-	-	T	118475629	C	T	118475629	2	4	140	1	0	0	0	0	0	0	0	1	14677	610	22	4		4	SLC35F1	6	118475629	Silent	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09		118475629	52639438	9	8192										
MAP3K5	0	genome.wustl.edu	37	chr6	137019648	137019648	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	tagaacttgcttgtgccaccTtcaaaagttgaataaaacga	7	8	1	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	6	137019648	137019648	T	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.785	p.K262M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	34	0	0	19	3	13.64	-	-	-	A	137019648	T	A	137019648	3	1	140	1	0	0	0	0	1	0	0	0	9324	1609	56	5	3447	5	MAP3K5	6	137019648	Missense_Mutation	SNP	T	TCGA-A7-A3J1-01A-11D-A20S-09	18544019	137019648	34095419	10	8193										
TSTD2	0	genome.wustl.edu	37	chr9	100368543	100368543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	cacctggggataaatggattCctaaaaccaaaccaaaaaaa	6	9	0	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	9	100368543	100368543	C	T	SNP	TSTD2	ENST00000341170	human	ensembl	69_37n	-1	known	missense	c.836	p.G279E	1.000	superfamily_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925	47	0	0	31	9	22.5	-	-	-	T	100368543	C	T	100368543	3	4	140	1	0	0	0	0	1	0	0	0	16772	869	30	2	730	2	TSTD2	9	100368543	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09		100368543	40844888	11	8194										
OR51A7	0	genome.wustl.edu	37	chr11	4929467	4929467	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	cgccccttatgaaccccattGtgtactgtgtaaagactcga	8	12	0	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	11	4929467	4929467	G	T	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	1	known	missense	c.868	p.V290L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	36	0	0	34	9	20.93	-	-	-	T	4929467	G	T	4929467	3	4	140	1	0	0	0	0	1	0	0	0	11161	1377	48	4	870	4	OR51A7	11	4929467	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09		4929467	130077049	12	8195										
RPS6KL1	0	genome.wustl.edu	37	chr14	75375556	75375556	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ccagcccagccactcaccatTcccgtcagcagttcatacag	6	18	3	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	75375556	75375556	T	G	SNP	RPS6KL1	ENST00000553971	human	ensembl	69_37n	-1	novel	missense	c.199	p.N67H	0.897	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPS6KL1	HGNC	ENSG00000198208	15	0	0	12	10	45.45	-	-	-	G	75375556	T	G	75375556	3	3	140	1	0	0	0	0	1	0	0	0	13745	1770	62	5	294	5	RPS6KL1	14	75375556	Missense_Mutation	SNP	T	TCGA-A7-A3J1-01A-11D-A20S-09		75375556	31973984	13	8196										
SERPINA4	0	genome.wustl.edu	37	chr14	95029840	95029840	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	atgcatcttatcgactacctGctcctcctgctggttggact	8	13	1	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	95029840	95029840	G	T	SNP	SERPINA4	ENST00000298841	human	ensembl	69_37n	1	known	silent	c.21	p.L7	0.199	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	30	0	0	17	3	15	-	-	-	T	95029840	G	T	95029840	2	4	140	1	0	0	0	0	0	0	0	1	14179	1306	46	4		4	SERPINA4	14	95029840	Silent	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09	19654284	95029840	12319700	14	8197										
USP8	0	genome.wustl.edu	37	chr15	50782481	50782481	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ttcttgacccaatcactggaAcctttcgttattatcattca	4	11	4	1			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	15	50782481	50782481	A	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.1993	p.T665P	1.000	superfamily_WW_Rsp5_WWP	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	21	0	0	7	7	50	-	-	-	C	50782481	A	C	50782481	3	2	140	1	0	0	0	0	1	0	0	0	17186	43	2	5	2043	5	USP8	15	50782481	Missense_Mutation	SNP	A	TCGA-A7-A3J1-01A-11D-A20S-09		50782481	51748911	15	8198										
PKD1	0	genome.wustl.edu	37	chr16	2147330	2147330	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	cccagctcacctgatgctgaGaaggatttggcaggcgagta	13	10	1	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	2147330	2147330	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	silent	c.10395	p.F3465	0.905	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	46	0	0	58	25	30.12	-	-	-	A	2147330	G	A	2147330	2	1	140	1	0	0	0	0	0	0	0	1	12037	933	33	2		2	PKD1	16	2147330	Silent	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09		2147330	88207423	16	8199										
GPT2	0	genome.wustl.edu	37	chr16	46918827	46918827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ggagtacgccgtgcggggacCcatcgtgctcaaggccggcg	17	13	1	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	46918827	46918827	C	T	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	1	known	missense	c.200	p.P67L	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	15	0	0	16	6	27.27	-	-	-	T	46918827	C	T	46918827	3	4	140	1	0	0	0	0	1	0	0	0	6789	623	22	4	202	4	GPT2	16	46918827	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09	44771497	46918827	43435926	17	8200										
CDH1	0	genome.wustl.edu	37	chr16	68857496	68857496	+	Frame_Shift_Del	DEL	C	C	-													0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	gattgcaaattcctgccattCtggggattcttggaggaatt							TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	68857496	68857496	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2131	p.L711fs	0.273	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0	16	11	40.74	-	-	-	-	68857496	C	-	68857496	7	5	140	1	0	1	0	1	0	0	0	0	3124	912	32	0	2181	0	CDH1	16	68857496	Frame_Shift_Del	DEL	C	TCGA-A7-A3J1-01A-11D-A20S-09	21938669	68857496	21497257	18	8201										
MYH8	0	genome.wustl.edu	37	chr17	10299647	10299647	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	taatacaaggtaatatgtacCtctgcttcctctaaagcagc	6	10	2	0			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	17	10299647	10299647	C	A	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4653	p.E1551D	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	62	0	0	52	15	22.39	-	-	-	A	10299647	C	A	10299647	3	1	140	1	0	0	0	0	1	0	0	0	10113	695	24	4	1192	4	MYH8	17	10299647	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09		10299647	70895563	19	8202										
ADAMTSL5	0	genome.wustl.edu	37	chr19	1506309	1506309	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	ggtggcccagcactcgggccTggaacactgttgaggggacg	17	11	0	1			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	1506309	1506309	T	G	SNP	ADAMTSL5	ENST00000395467	human	ensembl	69_37n	-1	known	splice_site	c.350-2	e3-2	1.000	-	-	-	no_errors	ADAMTSL5	HGNC	ENSG00000185761	17	0	0	16	4	20	-	-	-	G	1506309	T	G	1506309	5	3	140	1	0	0	0	0	0	0	1	0	278	1580	55	5	298	5	ADAMTSL5	19	1506309	Splice_Site	SNP	T	TCGA-A7-A3J1-01A-11D-A20S-09		1506309	57622674	20	8203										
ZNF540	0	genome.wustl.edu	37	chr19	38090640	38090640	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	atgttggagaattataataaCttggtctcactgggtaaggt	11	4	1	1			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	38090640	38090640	C	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.123	p.N41K	0.008	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	27	0	0	20	7	25.93	-	-	-	A	38090640	C	A	38090640	3	1	140	1	0	0	0	0	1	0	0	0	18071	564	20	4	129	4	ZNF540	19	38090640	Missense_Mutation	SNP	C	TCGA-A7-A3J1-01A-11D-A20S-09	36584331	38090640	21038343	21	8204										
LILRA2	0	genome.wustl.edu	37	chr19	55098805	55098805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	gaagcctacaagatgcagccGggaggtgaacagcagagagg	16	8	0	3			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	55098805	55098805	G	A	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	missense	c.1444	p.G482R	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	44	0	0	44	14	24.14	-	-	-	A	55098805	G	A	55098805	3	1	140	1	0	0	0	0	1	0	0	0	8840	1116	39	1	1474	1	LILRA2	19	55098805	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09	17008165	55098805	4030178	22	8205										
SGSM1	0	genome.wustl.edu	37	chr22	25280109	25280109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	tgtctccagacttgccctgcGatgctggacagggactgaca	12	12	1	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	22	25280109	25280109	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.1750	p.D584N	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	32	0	0	27	8	22.86	-	-	-	A	25280109	G	A	25280109	3	1	140	1	0	0	0	0	1	0	0	0	14310	1058	37	1	1812	1	SGSM1	22	25280109	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09		25280109	26024457	23	8206										
HUWE1	0	genome.wustl.edu	37	chrX	53602625	53602625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.965830697851541	0.807909604519774	NA	0.807909604519774	1	1	0	taatggaaaaacctgactgcGtatcaaagtcactgctctga	8	9	3	2			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	X	53602625	53602625	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.6008	p.T2003M	0.163	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	30	0	0	28	8	22.22	-	-	-	A	53602625	G	A	53602625	3	1	140	1	0	0	0	0	1	0	0	0	7515	1145	40	1	7276	1	HUWE1	23	53602625	Missense_Mutation	SNP	G	TCGA-A7-A3J1-01A-11D-A20S-09		53602625	101667935	24	8207										
AHDC1	0	genome.wustl.edu	37	chr1	27875353	27875355	+	In_Frame_Del	DEL	AGG	AGG	-													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gttctcgggcgagggctggaAggaggaggaggaggaggagg							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	27875353	27875355	AGG	-	DEL	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	in_frame_del	c.3274_3272	p.S1091in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	60	0	0	33	4	10.81	-	-	-	-	27875355	AGG	-	27875353	7	5	141	1	0	1	0	1	0	0	0	0	412	72	3	0	1541	0	AHDC1	1	27875353	In_Frame_Del	DEL	AGG	TCGA-A7-A3RF-01A-11D-A228-09		27875353	221375268	1	8208										
KIAA1522	0	genome.wustl.edu	37	chr1	33233706	33233706	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ggctgggaccatggagacacCcagagtatccaggtgagccc	14	12	0	3			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	33233706	33233706	C	A	SNP	KIAA1522	ENST00000401073	human	ensembl	69_37n	1	known	silent	c.450	p.T150	1.000	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522	48	0	0	16	8	33.33	-	-	-	A	33233706	C	A	33233706	2	1	141	1	0	0	0	0	0	0	0	1	8290	610	22	4		4	KIAA1522	1	33233706	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	5358353	33233706	216016915	2	8209										
CSMD2	0	genome.wustl.edu	37	chr1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gatcaaagctgtcccccaaaCggatgccatgagccgggatc	11	13	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	34011768	34011768	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.8969	p.R2990H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	57	0	0	22	13	37.14	-	-	-	T	34011768	C	T	34011768	3	4	141	1	0	0	0	0	1	0	0	0	3977	536	19	1	1982	1	CSMD2	1	34011768	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	778062	34011768	215238853	3	8210										
RNF220	0	genome.wustl.edu	37	chr1	44877815	44877815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agatggagaactcatcctacCttcccaaccctctggcatcc	6	16	2	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	44877815	44877815	C	T	SNP	RNF220	ENST00000355387	human	ensembl	69_37n	1	known	missense	c.46	p.L16F	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147	106	0	0	50	10	16.67	-	-	-	T	44877815	C	T	44877815	3	4	141	1	0	0	0	0	1	0	0	0	13569	681	24	4	48	4	RNF220	1	44877815	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	10866047	44877815	204372806	4	8211										
RPRD2	0	genome.wustl.edu	37	chr1	150445838	150445838	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	caagggaaaggcattttgaaCagtctagagaacattggaag	12	5	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	150445838	150445838	C	A	SNP	RPRD2	ENST00000492220	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125	33	0	0	23	4	14.81	-	-	-	A	150445838	C	A	150445838	1	1	141	0	1	0	0	0	0	0	0	0	13703	493	17	4		4	RPRD2	1	150445838	RNA	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	105568023	150445838	98804783	5	8212										
SPRR2G	0	genome.wustl.edu	37	chr1	153122539	153122539	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cactttggcgtggggcacacAggaggtggctggcagggctg	19	9	0	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	153122539	153122539	A	G	SNP	SPRR2G	ENST00000368748	human	ensembl	69_37n	-1	known	silent	c.48	p.P16	0.345	NULL	NULL	-	no_errors	SPRR2G	HGNC	ENSG00000159516	164	0	0	99	30	23.26	-	-	-	G	153122539	A	G	153122539	2	3	141	1	0	0	0	0	0	0	0	1	15193	175	7	5		5	SPRR2G	1	153122539	Silent	SNP	A	TCGA-A7-A3RF-01A-11D-A228-09	2676701	153122539	96128082	6	8213										
PVRL4	0	genome.wustl.edu	37	chr1	161042511	161042511	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cccgtgggcttggcccgtagGgtcccattctcctgaacaaa	11	14	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	161042511	161042511	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	69_37n	-1	known	silent	c.1473	p.T491	0.962	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PVRL4	HGNC	ENSG00000143217	115	0	0	41	28	40	-	-	-	A	161042511	G	A	161042511	2	1	141	1	0	0	0	0	0	0	0	1	12925	1219	43	4		4	PVRL4	1	161042511	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	7919972	161042511	88208110	7	8214										
USH2A	0	genome.wustl.edu	37	chr1	216390733	216390733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	accagagttcacttacttttGctgcaacccaatagattgtt	6	10	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	216390733	216390733	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.3153	p.S1051	1.000	pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	53	0	0	31	5	13.89	-	-	-	A	216390733	G	A	216390733	2	1	141	1	0	0	0	0	0	0	0	1	17133	1310	46	4		4	USH2A	1	216390733	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	55348222	216390733	32859888	8	8215										
CAPN2	0	genome.wustl.edu	37	chr1	223900497	223900497	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cttccaggacccgtccttccCggccatcccctcggccctgg	9	21	0	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	223900497	223900497	C	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.155	p.P52Q	0.988	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	46	0	0	20	4	16.67	-	-	-	A	223900497	C	A	223900497	3	1	141	1	0	0	0	0	1	0	0	0	2652	652	23	3	164	3	CAPN2	1	223900497	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	7509764	223900497	25350124	9	8216										
KIAA1383	0	genome.wustl.edu	37	chr1	232943640	232943640	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gaaaaccagatagatcaaaaTagtatgcacaattctgaaat	6	6	2	3			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	232943640	232943640	T	C	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	silent	c.2871	p.N957	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	26	0	0	18	12	40	-	-	-	C	232943640	T	C	232943640	2	2	141	1	0	0	0	0	0	0	0	1	8280	1403	49	5		5	KIAA1383	1	232943640	Silent	SNP	T	TCGA-A7-A3RF-01A-11D-A228-09	9043143	232943640	16306981	10	8217										
KIAA1804	0	genome.wustl.edu	37	chr1	233512266	233512266	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ttggcttcattgtttgtggaCcagccaggtaaatgtgtttc	11	7	1	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	1	233512266	233512266	C	T	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	silent	c.1917	p.D639	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	87	0	0	30	20	40	-	-	-	T	233512266	C	T	233512266	2	4	141	1	0	0	0	0	0	0	0	1	8311	506	18	4		4	KIAA1804	1	233512266	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	568626	233512266	15738355	11	8218										
APOB	0	genome.wustl.edu	37	chr2	21229322	21229322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgtggtcaactgctcctttaGcggtagagtacagcattgaa	11	8	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	21229322	21229322	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.10418	p.A3473V	0.860	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	38	0	0	16	7	30.43	-	-	-	A	21229322	G	A	21229322	3	1	141	1	0	0	0	0	1	0	0	0	787	971	34	4	3289	4	APOB	2	21229322	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		21229322	221970051	12	8219										
ADCY3	0	genome.wustl.edu	37	chr2	25046212	25046212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tccaatctcatcatacgtctGgctatacagctcctaaaaag	5	12	3	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25046212	25046212	G	T	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	missense	c.2749	p.Q917K	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	71	0	0	35	4	10.26	-	-	-	T	25046212	G	T	25046212	3	4	141	1	0	0	0	0	1	0	0	0	295	1357	47	4	705	4	ADCY3	2	25046212	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	3816890	25046212	218153161	13	8220										
DNMT3A	0	genome.wustl.edu	37	chr2	25469630	25469630	+	Frame_Shift_Del	DEL	C	C	-													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	caccgggaacagcttccccgCgcggctgctggccacctgga							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25469630	25469630	C	-	DEL	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	frame_shift_del	c.1138	p.A380fs	0.983	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	31	0	0	9	6	40	-	-	-	-	25469630	C	-	25469630	7	5	141	1	0	1	0	1	0	0	0	0	4711	768	27	0	1656	0	DNMT3A	2	25469630	Frame_Shift_Del	DEL	C	TCGA-A7-A3RF-01A-11D-A228-09	423418	25469630	217729743	14	8221	64	2								
DNMT3A	0	genome.wustl.edu	37	chr2	25469632	25469632	+	Frame_Shift_Del	DEL	C	C	-													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ccgggaacagcttccccgcgCggctgctggccacctggagg							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	25469632	25469632	C	-	DEL	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	frame_shift_del	c.1136	p.R379fs	0.997	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	28	0	0	7	6	42.86	-	-	-	-	25469632	C	-	25469632	7	5	141	1	0	1	0	1	0	0	0	0	4711	768	27	0	1658	0	DNMT3A	2	25469632	Frame_Shift_Del	DEL	C	TCGA-A7-A3RF-01A-11D-A228-09	2	25469632	217729741	15	8222	64	2								
EPAS1	0	genome.wustl.edu	37	chr2	46574117	46574117	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gcccatgagctgcctctgccCcacagtgtgagctcccatct	9	17	2	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	46574117	46574117	C	A	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	silent	c.132	p.P44	0.014	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	92	0	0	30	5	14.29	-	-	-	A	46574117	C	A	46574117	2	1	141	1	0	0	0	0	0	0	0	1	5187	610	22	4		4	EPAS1	2	46574117	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	21104485	46574117	196625256	16	8223										
NRXN1	0	genome.wustl.edu	37	chr2	50201237	50201237	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgaaatcaatactggtgacaGgagagctccctgactcagtg	11	9	2	4			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	50201237	50201237	G	T	SNP	NRXN1	ENST00000412315	human	ensembl	69_37n	-1	novel	silent	c.105	p.S35	1.000	NULL	smart_Neurexin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRXN1	HGNC	ENSG00000179915	51	0	0	28	4	12.5	-	-	-	T	50201237	G	T	50201237	2	4	141	1	0	0	0	0	0	0	0	1	10738	1015	35	4		4	NRXN1	2	50201237	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	3627120	50201237	192998136	17	8224										
USP34	0	genome.wustl.edu	37	chr2	61484057	61484057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	acctcacagtataaaactctTcagcagtttgactaacatgt	5	10	3	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	61484057	61484057	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.6077	p.E2026G	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	32	0	0	49	10	16.95	-	-	-	C	61484057	T	C	61484057	3	2	141	1	0	0	0	0	1	0	0	0	17162	1783	62	5	4699	5	USP34	2	61484057	Missense_Mutation	SNP	T	TCGA-A7-A3RF-01A-11D-A228-09	11282820	61484057	181715316	18	8225										
RTKN	0	genome.wustl.edu	37	chr2	74659597	74659597	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gtctcccccttgctcaccgcCggcttgtcttccccagcacc	7	21	3	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	74659597	74659597	C	A	SNP	RTKN	ENST00000272430	human	ensembl	69_37n	-1	known	missense	c.308	p.R103L	1.000	NULL	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	105	0	0	35	4	10.26	-	-	-	A	74659597	C	A	74659597	3	1	141	1	0	0	0	0	1	0	0	0	13808	652	23	3	1427	3	RTKN	2	74659597	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	13175540	74659597	168539776	19	8226										
SH3RF3	0	genome.wustl.edu	37	chr2	110107366	110107366	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tccatggctgccatccgcccCgagcccaagctgttgcccag	10	18	0	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	110107366	110107366	C	A	SNP	SH3RF3	ENST00000309415	human	ensembl	69_37n	1	known	silent	c.2454	p.P818	0.002	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox	-	no_errors	SH3RF3	HGNC	ENSG00000172985	45	0	0	27	5	15.62	-	-	-	A	110107366	C	A	110107366	2	1	141	1	0	0	0	0	0	0	0	1	14349	639	23	3		3	SH3RF3	2	110107366	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	35447769	110107366	133092007	20	8227										
ZAK	0	genome.wustl.edu	37	chr2	174086217	174086219	+	In_Frame_Del	DEL	GAC	GAC	-													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gtgacgatgatgatgatgatGacggtgaggaggaggataat							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	2	174086217	174086219	GAC	-	DEL	ZAK	ENST00000338983	human	ensembl	69_37n	1	known	in_frame_del	c.1327_1329	p.D443in_frame_del	1.000:0.982:0.676	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	52	0	0	13	2	13.33	-	-	-	-	174086219	GAC	-	174086217	7	5	141	1	0	1	0	1	0	0	0	0	17609	1290	45	0	1369	0	ZAK	2	174086217	In_Frame_Del	DEL	GAC	TCGA-A7-A3RF-01A-11D-A228-09	63978851	174086217	69113156	21	8228										
KIAA1524	0	genome.wustl.edu	37	chr3	108298527	108298527	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agagttcgataaaaagatttCacattactctgaggaaaaaa	7	5	2	3			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	3	108298527	108298527	C	A	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	silent	c.558	p.V186	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	27	0	0	25	21	45.65	-	-	-	A	108298527	C	A	108298527	2	1	141	1	0	0	0	0	0	0	0	1	8291	813	29	2		2	KIAA1524	3	108298527	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		108298527	89723903	22	8229										
VCAN	0	genome.wustl.edu	37	chr5	82815219	82815219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cctcgcagaaactgcatcacCcagtttatccaaagaaccac	5	15	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	5	82815219	82815219	C	A	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.1094	p.P365H	0.967	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	51	0	0	29	4	12.12	-	-	-	A	82815219	C	A	82815219	3	1	141	1	0	0	0	0	1	0	0	0	17235	623	22	4	1116	4	VCAN	5	82815219	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		82815219	98100041	23	8230										
ZNF608	0	genome.wustl.edu	37	chr5	123972613	123972614	+	RNA	INS	-	-	A													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cagacaagaagccattatttINSaaaaaaaaaaaaacttttta							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	5	123972613	123972614	-	A	INS	ZNF608	ENST00000513985	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.291:0.200	-	-	-	no_errors	ZNF608	HGNC	ENSG00000168916	9	0	0	13	10	43.48	-	-	-	A	123972614	-	A	123972613	6	5	141	0	1	1	1	0	0	0	0	0	18130	1769	61	0		0	ZNF608	5	123972613	RNA	INS	-	TCGA-A7-A3RF-01A-11D-A228-09	41157394	123972613	56942647	24	8231										
EXOC2	0	genome.wustl.edu	37	chr6	619510	619510	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tcagcactcattccatggaaTagcatttctaagtccttctg	6	11	4	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	619510	619510	T	C	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	silent	c.456	p.L152	0.939	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	63	0	0	19	9	32.14	-	-	-	C	619510	T	C	619510	2	2	141	1	0	0	0	0	0	0	0	1	5338	1393	49	5		5	EXOC2	6	619510	Silent	SNP	T	TCGA-A7-A3RF-01A-11D-A228-09		619510	170495557	25	8232										
PHF3	0	genome.wustl.edu	37	chr6	64404655	64404655	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agaaaaagcttcaaaaccagGtagtgagatgaacagaaaaa	9	5	1	4			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	64404655	64404655	G	C	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	splice_site	c.2680+1	e5+1	1.000	-	-	-	no_errors	PHF3	HGNC	ENSG00000118482	28	0	0	28	4	12.5	-	-	-	C	64404655	G	C	64404655	5	2	141	1	0	0	0	0	0	0	1	0	11910	1275	44	4	2699	4	PHF3	6	64404655	Splice_Site	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	63785145	64404655	106710412	26	8233										
HIVEP2	0	genome.wustl.edu	37	chr6	143075010	143075010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agcctggatgttcataagcaCcttcttggtctccatagaga	9	10	3	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	6	143075010	143075010	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.6575	p.G2192D	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	39	0	0	49	7	12.5	-	-	-	T	143075010	C	T	143075010	3	4	141	1	0	0	0	0	1	0	0	0	7238	507	18	4	769	4	HIVEP2	6	143075010	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	78670355	143075010	28040057	27	8234										
LIMK1	0	genome.wustl.edu	37	chr7	73520486	73520486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tcacgatacactgggccacgGgctggggcctgagaccagcc	14	14	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	73520486	73520486	G	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	missense	c.794	p.G265V	0.242	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	54	0	0	34	4	10.53	-	-	-	T	73520486	G	T	73520486	3	4	141	1	0	0	0	0	1	0	0	0	8856	1232	43	4	820	4	LIMK1	7	73520486	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		73520486	85618177	28	8235										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74564167	74564167	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gtcacaaaactgaagtccagGgtggcgacgttctgcaaggg	14	9	2	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	74564167	74564167	G	T	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	missense	c.1914	p.R638S	0.106	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	45	0	0	26	4	13.33	-	-	-	T	74564167	G	T	74564167	3	4	141	1	0	0	0	0	1	0	0	0	6921	1223	43	4	1972	4	GTF2IRD2B	7	74564167	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	1043681	74564167	84574496	29	8236										
TFPI2	0	genome.wustl.edu	37	chr7	93519971	93519972	+	Frame_Shift_Ins	INS	-	-	G													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cagcagaatcgacagccccaINSgggggcgagcggggtccatg							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	93519971	93519972	-	G	INS	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	frame_shift_ins	c.20_19	p.L7fs	0.001:0.000	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	9	0	0	10	2	16.67	-	-	-	G	93519972	-	G	93519971	7	5	141	1	0	1	1	0	0	0	0	0	15904	188	7	0	707	0	TFPI2	7	93519971	Frame_Shift_Ins	INS	-	TCGA-A7-A3RF-01A-11D-A228-09	18955804	93519971	65618692	30	8237										
MLL3	0	genome.wustl.edu	37	chr7	151879136	151879136	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgctgttgtctcattcatttGaaggggcctagataccgatg	11	8	2	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	7	151879136	151879136	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5809	p.Q1937*	0.047	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	70	0	0	26	18	40.91	-	-	-	A	151879136	G	A	151879136	4	1	141	1	0	0	0	0	0	1	0	0	9693	1299	45	2	9022	2	MLL3	7	151879136	Nonsense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	58359165	151879136	7259527	31	8238										
PRKDC	0	genome.wustl.edu	37	chr8	48812933	48812933	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	aacactgaagcaaaacgtacCtaaggacttctcatctgcat	6	11	2	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	48812933	48812933	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.3364	p.G1122C	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	60	0	0	30	4	11.76	-	-	-	A	48812933	C	A	48812933	3	1	141	1	0	0	0	0	1	0	0	0	12602	695	24	4	9257	4	PRKDC	8	48812933	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		48812933	97551089	32	8239										
RPS20	0	genome.wustl.edu	37	chr8	56986993	56986993	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgttcctcggcgagagcgaaCagcggtgagtcaggagcagg	17	9	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	56986993	56986993	C	T	SNP	RPS20	ENST00000520490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPS20	HGNC	ENSG00000008988	19	0	0	9	4	30.77	-	-	-	T	56986993	C	T	56986993	1	4	141	0	1	0	0	0	0	0	0	0	13718	493	17	4		4	RPS20	8	56986993	RNA	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	8174060	56986993	89377029	33	8240										
GSDMC	0	genome.wustl.edu	37	chr8	130789734	130789734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tcgtaatataacaaactgacGtaatttggtggcactcaata	7	7	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	130789734	130789734	G	A	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	missense	c.100	p.R34C	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	131	0	0	31	15	32.61	-	-	-	A	130789734	G	A	130789734	3	1	141	1	0	0	0	0	1	0	0	0	6869	1145	40	1	1478	1	GSDMC	8	130789734	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	73802741	130789734	15574288	34	8241										
JRK	0	genome.wustl.edu	37	chr8	143740215	143740215	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ataacctcaagggcactggtGgggacagaggggtcttaccc	14	10	2	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	143740215	143740215	G	T	SNP	JRK	ENST00000507178	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	43	0	0	21	3	12.5	-	-	-	T	143740215	G	T	143740215	1	4	141	0	1	0	0	0	0	0	0	0	8018	1363	47	4		4	JRK	8	143740215	RNA	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	12950481	143740215	2623807	35	8242										
PPP1R16A	0	genome.wustl.edu	37	chr8	145722633	145722633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	catggtgggcaggatgagcaCacaggagcggctgaagcatg	17	8	0	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	8	145722633	145722633	C	T	SNP	PPP1R16A	ENST00000292539	human	ensembl	69_37n	1	known	missense	c.56	p.T19I	1.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972	51	0	0	21	4	16	-	-	-	T	145722633	C	T	145722633	3	4	141	1	0	0	0	0	1	0	0	0	12442	478	17	4	58	4	PPP1R16A	8	145722633	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	1982418	145722633	641389	36	8243										
STOX1	0	genome.wustl.edu	37	chr10	70644056	70644056	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gatattctttataccactctGggaacgctgattaaagaaag	8	7	2	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	10	70644056	70644056	G	T	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	silent	c.504	p.L168	1.000	pfam_Storkhead-box_winged-helix	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	44	0	0	15	3	16.67	-	-	-	T	70644056	G	T	70644056	2	4	141	1	0	0	0	0	0	0	0	1	15410	1335	47	4		4	STOX1	10	70644056	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		70644056	64890691	37	8244										
SLC22A8	0	genome.wustl.edu	37	chr11	62761059	62761059	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	cagcggggacaccatgcttcCcacgcgggtccacaggttac	12	15	0	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	62761059	62761059	C	A	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	nonsense	c.1366	p.G456*	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	61	0	0	33	4	10.81	-	-	-	A	62761059	C	A	62761059	4	1	141	1	0	0	0	0	0	1	0	0	14549	632	22	4	270	4	SLC22A8	11	62761059	Nonsense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		62761059	72245457	38	8245										
C11orf63	0	genome.wustl.edu	37	chr11	122805129	122805129	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	accaaaaatatctctttagaAttaccaggaacactggtctc	5	10	2	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	11	122805129	122805129	A	T	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.980	p.N327I	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	61	0	0	31	20	39.22	-	-	-	T	122805129	A	T	122805129	3	4	141	1	0	0	0	0	1	0	0	0	1665	115	4	5	1058	5	C11orf63	11	122805129	Missense_Mutation	SNP	A	TCGA-A7-A3RF-01A-11D-A228-09	60044070	122805129	12201387	39	8246										
CLSTN3	0	genome.wustl.edu	37	chr12	7303269	7303269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gaatggccgttactccagcaAtgaattcatcgtggaggtac	11	9	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	12	7303269	7303269	A	G	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	missense	c.2375	p.N792S	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	51	0	0	19	15	44.12	-	-	-	G	7303269	A	G	7303269	3	3	141	1	0	0	0	0	1	0	0	0	3593	101	4	5	2433	5	CLSTN3	12	7303269	Missense_Mutation	SNP	A	TCGA-A7-A3RF-01A-11D-A228-09		7303269	126548626	40	8247										
GALNT6	0	genome.wustl.edu	37	chr12	51758037	51758037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ggacgggcttggcgaactcaAaagtattaaggtcgatggtg	15	6	1	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	12	51758037	51758037	A	G	SNP	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	missense	c.917	p.F306S	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	221	1	0.45	114	15	11.63	-	-	-	G	51758037	A	G	51758037	3	3	141	1	0	0	0	0	1	0	0	0	6267	14	1	5	979	5	GALNT6	12	51758037	Missense_Mutation	SNP	A	TCGA-A7-A3RF-01A-11D-A228-09	44454768	51758037	82093858	41	8248										
ATP7B	0	genome.wustl.edu	37	chr13	52518395	52518395	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ctggggacgccatgggtaatGgtgccagtcttgtcaaacat	13	9	2	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	52518395	52518395	G	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.3093	p.T1031	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	100	0	0	35	4	10.26	-	-	-	T	52518395	G	T	52518395	2	4	141	1	0	0	0	0	0	0	0	1	1195	1335	47	4		4	ATP7B	13	52518395	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		52518395	62651483	42	8249										
COL4A1	0	genome.wustl.edu	37	chr13	110847433	110847433	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tccaggaggaccctggtcacCtggaggtccgggctgacatt	14	12	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	110847433	110847433	C	A	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.1318	p.G440C	0.872	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	53	0	0	30	4	11.76	-	-	-	A	110847433	C	A	110847433	3	1	141	1	0	0	0	0	1	0	0	0	3719	681	24	4	3815	4	COL4A1	13	110847433	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	58329038	110847433	4322445	43	8250										
COL4A2	0	genome.wustl.edu	37	chr13	111143635	111143635	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ggtgacatcggcttccctggGataacaggcgtgactggagt	15	9	0	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	13	111143635	111143635	G	C	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	silent	c.3402	p.G1134	0.492	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	42	0	0	18	13	41.94	-	-	-	C	111143635	G	C	111143635	2	2	141	1	0	0	0	0	0	0	0	1	3720	1161	41	2		2	COL4A2	13	111143635	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	296202	111143635	4026243	44	8251										
RPAP1	0	genome.wustl.edu	37	chr15	41828343	41828343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ctacctgtgtgtcccgcgagCgaaggaacacagcagggaaa	13	11	0	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	15	41828343	41828343	C	T	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	missense	c.404	p.R135H	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	50	0	0	28	5	15.15	-	-	-	T	41828343	C	T	41828343	3	4	141	1	0	0	0	0	1	0	0	0	13627	768	27	1	3865	1	RPAP1	15	41828343	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		41828343	60703049	45	8252										
ITFG3	0	genome.wustl.edu	37	chr16	314108	314108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgtccgccagcctgccgaccGcagaccaccgctcagccttc	9	20	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	16	314108	314108	G	A	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	missense	c.1282	p.A428T	0.926	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	70	0	0	33	23	41.07	-	-	-	A	314108	G	A	314108	3	1	141	1	0	0	0	0	1	0	0	0	7925	1087	38	1	1316	1	ITFG3	16	314108	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		314108	90040645	46	8253										
PLA2G15	0	genome.wustl.edu	37	chr16	68293091	68293091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	catcgggcccctgaagatccGggagcagcagcggtcagctg	15	13	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	16	68293091	68293091	G	T	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	1	known	missense	c.770	p.R257L	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	70	0	0	36	4	10	-	-	-	T	68293091	G	T	68293091	3	4	141	1	0	0	0	0	1	0	0	0	12066	1116	39	3	792	3	PLA2G15	16	68293091	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	67978983	68293091	22061662	47	8254										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	64	0	0	31	4	11.43	-	-	-	T	7577120	C	T	7577120	3	4	141	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		7577120	73618090	48	8255										
LRRC48	0	genome.wustl.edu	37	chr17	17907781	17907781	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ttcgatgcgctcatgacgctGgagatgcagctggtggagca	15	9	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	17907781	17907781	G	A	SNP	LRRC48	ENST00000313838	human	ensembl	69_37n	1	known	silent	c.1104	p.L368	0.998	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	82	0	0	32	14	29.79	-	-	-	A	17907781	G	A	17907781	2	1	141	1	0	0	0	0	0	0	0	1	9071	1335	47	4		4	LRRC48	17	17907781	Silent	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	10330661	17907781	63287429	49	8256										
EFTUD2	0	genome.wustl.edu	37	chr17	42928692	42928692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tttggcaagttccagcaacaTaggatcatcgaagaatttgc	9	8	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	42928692	42928692	T	C	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2869	p.M957V	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	32	0	0	13	3	18.75	-	-	-	C	42928692	T	C	42928692	3	2	141	1	0	0	0	0	1	0	0	0	4996	1406	49	5	53	5	EFTUD2	17	42928692	Missense_Mutation	SNP	T	TCGA-A7-A3RF-01A-11D-A228-09	25020911	42928692	38266518	50	8257										
ACE	0	genome.wustl.edu	37	chr17	61562387	61562387	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	accagcagccagacaaccacCcaccaggcgacggcccacca	8	20	0	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	61562387	61562387	C	A	SNP	ACE	ENST00000490216	human	ensembl	69_37n	1	known	silent	c.159	p.T53	0.001	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	57	0	0	28	5	15.15	-	-	-	A	61562387	C	A	61562387	2	1	141	1	0	0	0	0	0	0	0	1	136	610	22	4		4	ACE	17	61562387	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	18633695	61562387	19632823	51	8258										
FAM20A	0	genome.wustl.edu	37	chr17	66533883	66533883	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	aaagtgttttcttttttatcCtgaaaagacaaagttacagg	7	5	1	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	66533883	66533883	C	A	SNP	FAM20A	ENST00000592554	human	ensembl	69_37n	-1	known	splice_site	c.1362-1	e11-1	1.000	-	-	-	no_errors	FAM20A	HGNC	ENSG00000108950	36	0	0	18	3	14.29	-	-	-	A	66533883	C	A	66533883	5	1	141	1	0	0	0	0	0	0	1	0	5579	695	24	4	268	4	FAM20A	17	66533883	Splice_Site	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	4971496	66533883	14661327	52	8259										
SDK2	0	genome.wustl.edu	37	chr17	71375613	71375613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ccccaacaaagacctcctgcGgggggctggagggcccctca	13	16	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	71375613	71375613	G	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.4838	p.P1613Q	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	51	0	0	22	3	12	-	-	-	T	71375613	G	T	71375613	3	4	141	1	0	0	0	0	1	0	0	0	14057	1116	39	3	1724	3	SDK2	17	71375613	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	4841730	71375613	9819597	53	8260										
PRPSAP1	0	genome.wustl.edu	37	chr17	74324845	74324845	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tagcatttttgaccataggcGgggagtgacgaccatcgtcc	12	10	0	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	74324845	74324845	G	T	SNP	PRPSAP1	ENST00000446526	human	ensembl	69_37n	-1	known	missense	c.734	p.P245Q	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542	111	0	0	38	5	11.63	-	-	-	T	74324845	G	T	74324845	3	4	141	1	0	0	0	0	1	0	0	0	12662	1116	39	3	439	3	PRPSAP1	17	74324845	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	2949232	74324845	6870365	54	8261										
CCDC40	0	genome.wustl.edu	37	chr17	78064032	78064032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gaagaacacgggacgcgcgcAggcacgtgcacgaacaacac	13	13	0	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	17	78064032	78064032	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	1	known	missense	c.2927	p.Q976R	0.006	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	67	0	0	14	15	51.72	-	-	-	G	78064032	A	G	78064032	3	3	141	1	0	0	0	0	1	0	0	0	2838	203	7	5		5	CCDC40	17	78064032	Missense_Mutation	SNP	A	TCGA-A7-A3RF-01A-11D-A228-09	3739187	78064032	3131178	55	8262										
HNRNPL	0	genome.wustl.edu	37	chr19	39336615	39336615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agagtagttgacaaaagctgGgtgaccagcaatgtatattt	11	5	0	3			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	39336615	39336615	G	T	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	missense	c.502	p.P168T	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	82	0	0	60	7	10.45	-	-	-	T	39336615	G	T	39336615	3	4	141	1	0	0	0	0	1	0	0	0	7321	1232	43	4	1311	4	HNRNPL	19	39336615	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09		39336615	19792368	56	8263										
BBC3	0	genome.wustl.edu	37	chr19	47725123	47725123	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gcaggagtcccatgatgagaTtgtacaggaccctccagggt	13	10	0	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	47725123	47725123	T	C	SNP	BBC3	ENST00000439096	human	ensembl	69_37n	-1	known	missense	c.518	p.N173S	1.000	NULL	NULL	-	no_errors	BBC3	HGNC	ENSG00000105327	112	0	0	49	32	39.51	-	-	-	C	47725123	T	C	47725123	3	2	141	1	0	0	0	0	1	0	0	0	1337	1493	52	5	168	5	BBC3	19	47725123	Missense_Mutation	SNP	T	TCGA-A7-A3RF-01A-11D-A228-09	8388508	47725123	11403860	57	8264										
SLC8A2	0	genome.wustl.edu	37	chr19	47960788	47960789	+	Frame_Shift_Ins	INS	-	-	G													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tagaagagcagccgcttgtcINSggccatccaggcgaatacca							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	47960788	47960789	-	G	INS	SLC8A2	ENST00000236877	human	ensembl	69_37n	-1	known	frame_shift_ins	c.739_738	p.D246fs	1.000:0.926	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	37	0	0	5	2	28.57	-	-	-	G	47960789	-	G	47960788	7	5	141	1	0	1	1	0	0	0	0	0	14796	884	31	0	2058	0	SLC8A2	19	47960788	Frame_Shift_Ins	INS	-	TCGA-A7-A3RF-01A-11D-A228-09	235665	47960788	11168195	58	8265										
ZNF814	0	genome.wustl.edu	37	chr19	58384274	58384274	+	Frame_Shift_Del	DEL	A	A	-													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	ttcccacatttctcacatttAtaaggcttttctccagtgtg							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	19	58384274	58384274	A	-	DEL	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	frame_shift_del	c.2484	p.Y828fs	0.364	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	134	0	0	62	43	40.57	-	-	-	-	58384274	A	-	58384274	7	5	141	1	0	1	0	1	0	0	0	0	18269	456	16	0	87	0	ZNF814	19	58384274	Frame_Shift_Del	DEL	A	TCGA-A7-A3RF-01A-11D-A228-09	10423486	58384274	744709	59	8266										
USP25	0	genome.wustl.edu	37	chr21	17250132	17250132	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	aagaaattaaatgagcaagcCgcagaactcttcgaatctgg	9	8	2	3			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	17250132	17250132	C	A	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	silent	c.3027	p.A1009	0.774	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	38	0	0	34	4	10.53	-	-	-	A	17250132	C	A	17250132	2	1	141	1	0	0	0	0	0	0	0	1	17153	639	23	3		3	USP25	21	17250132	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		17250132	30879763	60	8267										
SYNJ1	0	genome.wustl.edu	37	chr21	34018835	34018835	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgaagagctgggggaagtacCaaggccggaacttgaagatg	16	6	0	4			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	34018835	34018835	C	A	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	missense	c.3232	p.G1078C	0.998	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	55	0	0	27	4	12.9	-	-	-	A	34018835	C	A	34018835	3	1	141	1	0	0	0	0	1	0	0	0	15544	594	21	4	1667	4	SYNJ1	21	34018835	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	16768703	34018835	14111060	61	8268										
DNMT3L	0	genome.wustl.edu	37	chr21	45670991	45670991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gcctgggtctgagggatcccCctgcccctgtccctccagca	11	18	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	21	45670991	45670991	C	A	SNP	DNMT3L	ENST00000436357	human	ensembl	69_37n	-1	putative	missense	c.131	p.G44V	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNMT3L	HGNC	ENSG00000142182	36	0	0	17	4	19.05	-	-	-	A	45670991	C	A	45670991	3	1	141	1	0	0	0	0	1	0	0	0	4713	638	22	4		4	DNMT3L	21	45670991	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	11652156	45670991	2458904	62	8269										
TXNRD2	0	genome.wustl.edu	37	chr22	19886581	19886581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gcaaaggatacagctggcccCgaccaccaacctgttagaga	10	13	0	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	19886581	19886581	C	A	SNP	TXNRD2	ENST00000535882	human	ensembl	69_37n	-1	known	missense	c.670	p.G224W	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	54	0	0	23	3	11.54	-	-	-	A	19886581	C	A	19886581	3	1	141	1	0	0	0	0	1	0	0	0	16905	652	23	3	937	3	TXNRD2	22	19886581	Missense_Mutation	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09		19886581	31417985	63	8270										
HMGXB4	0	genome.wustl.edu	37	chr22	35661431	35661431	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	agaagtttaggactttctgcCgtgccagtgggagaggtcac	14	8	2	2			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	35661431	35661431	C	A	SNP	HMGXB4	ENST00000216106	human	ensembl	69_37n	1	known	silent	c.1050	p.A350	0.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	61	0	0	30	4	11.76	-	-	-	A	35661431	C	A	35661431	2	1	141	1	0	0	0	0	0	0	0	1	7290	639	23	3		3	HMGXB4	22	35661431	Silent	SNP	C	TCGA-A7-A3RF-01A-11D-A228-09	15774850	35661431	15643135	64	8271										
SUN2	0	genome.wustl.edu	37	chr22	39137043	39137043	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgacttcagctgctggatgcGagcctcggactcctgtgtag	13	11	1	1			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	22	39137043	39137043	G	T	SNP	SUN2	ENST00000216064	human	ensembl	69_37n	-1	known	missense	c.1159	p.R387S	0.510	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	74	0	0	27	3	10	-	-	-	T	39137043	G	T	39137043	3	4	141	1	0	0	0	0	1	0	0	0	15483	1058	37	3	1026	3	SUN2	22	39137043	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	3475612	39137043	12167523	65	8272										
COL4A5	0	genome.wustl.edu	37	chrX	107834821	107834822	+	Frame_Shift_Ins	INS	-	-	C													0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	tgtgaaccaggccctccaggINSccccccaggatctccaggtg							TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	X	107834821	107834822	-	C	INS	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	frame_shift_ins	c.1370_1371	p.G460fs	0.871:0.765	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	89	0	0	51	20	28.17	-	-	-	C	107834822	-	C	107834821	7	5	141	1	0	1	1	0	0	0	0	0	3724	1203	42	0	1452	0	COL4A5	23	107834821	Frame_Shift_Ins	INS	-	TCGA-A7-A3RF-01A-11D-A228-09		107834821	47435739	66	8273										
DKC1	0	genome.wustl.edu	37	chrX	154002897	154002897	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0151515151515152	1	1	0.47741935483871	0	0.541075268817204	1	1	0	gcaagtcagaagaagctgatGatcaagcagggccttctgga	13	8	3	4			TCGA-A7-A3RF-01A-11D-A228-09	TCGA-A7-A3RF-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8de39bb8-b65a-4494-9201-441fe4f91057	3f6d602b-9a9f-4ed7-9155-14868319e688	X	154002897	154002897	G	T	SNP	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	missense	c.1176	p.M392I	1.000	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	58	0	0	22	4	15.38	-	-	-	T	154002897	G	T	154002897	3	4	141	1	0	0	0	0	1	0	0	0	4578	1290	45	2	1222	2	DKC1	23	154002897	Missense_Mutation	SNP	G	TCGA-A7-A3RF-01A-11D-A228-09	46168076	154002897	1267663	67	8274										
DHDDS	0	genome.wustl.edu	37	chr1	26774101	26774101	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tcccgtcatgagatcagcaaTgctgtgagagagatggcctg	13	9	2	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	1	26774101	26774101	T	A	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	missense	c.492	p.N164K	1.000	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	28	0	0	27	7	20.59	-	-	-	A	26774101	T	A	26774101	3	1	142	1	0	0	0	0	1	0	0	0	4514	1461	51	5	510	5	DHDDS	1	26774101	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09		26774101	222476520	1	8275										
MIER1	0	genome.wustl.edu	37	chr1	67450388	67450388	+	Frame_Shift_Del	DEL	A	A	-													0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gatactaatggttatgaaacAgataaccttaccactgaccc							TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	1	67450388	67450388	A	-	DEL	MIER1	ENST00000401041	human	ensembl	69_37n	1	known	frame_shift_del	c.1503	p.D502fs	0.338	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160	39	0	0	29	12	29.27	-	-	-	-	67450388	A	-	67450388	7	5	142	1	0	1	0	1	0	0	0	0	9651	175	7	0	1634	0	MIER1	1	67450388	Frame_Shift_Del	DEL	A	TCGA-A7-A425-01A-11D-A243-09	40676287	67450388	181800233	2	8276										
WLS	0	genome.wustl.edu	37	chr1	68603629	68603629	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tccgttacctgcggagaaagGatggtgatattcaattgaaa	11	6	1	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	1	68603629	68603629	G	T	SNP	WLS	ENST00000498615	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	WLS	HGNC	ENSG00000116729	27	0	0	27	4	12.9	-	-	-	T	68603629	G	T	68603629	1	4	142	0	1	0	0	0	0	0	0	0	17473	1189	41	2		2	WLS	1	68603629	RNA	SNP	G	TCGA-A7-A425-01A-11D-A243-09	1153241	68603629	180646992	3	8277										
CASQ2	0	genome.wustl.edu	37	chr1	116280880	116280880	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tcttgaaaaagccaatgagtTtgatgtagtcttcaatgcgt	9	6	3	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	1	116280880	116280880	T	C	SNP	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	missense	c.497	p.K166R	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	51	0	0	31	11	26.19	-	-	-	C	116280880	T	C	116280880	3	2	142	1	0	0	0	0	1	0	0	0	2706	1841	64	5	734	5	CASQ2	1	116280880	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09	47677251	116280880	132969741	4	8278										
DHX57	0	genome.wustl.edu	37	chr2	39053707	39053707	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	aacatagacaacatcatcgaTggttatggatgtctcagcaa	8	8	2	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	2	39053707	39053707	T	A	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.2764	p.I922F	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	53	0	0	22	7	24.14	-	-	-	A	39053707	T	A	39053707	3	1	142	1	0	0	0	0	1	0	0	0	4549	1464	51	5	1436	5	DHX57	2	39053707	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09		39053707	204145666	5	8279										
ARHGEF4	0	genome.wustl.edu	37	chr2	131673702	131673702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tgcttcggaagagacgccgaGcacagaggagcccccgggag	16	12	0	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	2	131673702	131673702	G	A	SNP	ARHGEF4	ENST00000409359	human	ensembl	69_37n	1	putative	missense	c.1193	p.S398N	0.002	NULL	NULL	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	12	0	0	2	4	66.67	-	-	-	A	131673702	G	A	131673702	3	1	142	1	0	0	0	0	1	0	0	0	910	986	34	4		4	ARHGEF4	2	131673702	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	92619995	131673702	111525671	6	8280										
TTN	0	genome.wustl.edu	37	chr2	179424989	179424989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	agcattttctgcataaacacGatattcatattcacatcctt	3	10	3	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	2	179424989	179424989	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.78166	p.R26056S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	43	0	0	21	3	12.5	-	-	-	T	179424989	G	T	179424989	3	4	142	1	0	0	0	0	1	0	0	0	16832	1058	37	3	22257	3	TTN	2	179424989	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	47751287	179424989	63774384	7	8281										
NRP2	0	genome.wustl.edu	37	chr2	206605294	206605294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tggttctgaacaagctccacGctccactgctgacaaggttt	9	12	1	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	2	206605294	206605294	G	T	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.1198	p.A400S	0.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	43	0	0	34	4	10.53	-	-	-	T	206605294	G	T	206605294	3	4	142	1	0	0	0	0	1	0	0	0	10734	1087	38	3	1228	3	NRP2	2	206605294	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	27180305	206605294	36594079	8	8282										
PHLDB2	0	genome.wustl.edu	37	chr3	111604096	111604096	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ttgtggatctgtggaatttgAtgaggcagatttggaaagcc	14	4	1	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	3	111604096	111604096	A	T	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.1172	p.D391V	0.997	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	30	0	0	25	5	16.67	-	-	-	T	111604096	A	T	111604096	3	4	142	1	0	0	0	0	1	0	0	0	11926	333	12	5	1259	5	PHLDB2	3	111604096	Missense_Mutation	SNP	A	TCGA-A7-A425-01A-11D-A243-09		111604096	86418334	9	8283										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	24	0	0	10	3	23.08	-	-	-	G	178952085	A	G	178952085	3	3	142	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A7-A425-01A-11D-A243-09	67347989	178952085	19070345	10	8284										
ADIPOQ	0	genome.wustl.edu	37	chr3	186572124	186572124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	agtgtgggattggagacttaCgttactatccccaacatgcc	10	10	0	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	3	186572124	186572124	C	T	SNP	ADIPOQ	ENST00000320741	human	ensembl	69_37n	1	known	silent	c.366	p.Y122	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	ADIPOQ	HGNC	ENSG00000181092	28	0	0	27	5	15.62	-	-	-	T	186572124	C	T	186572124	2	4	142	1	0	0	0	0	0	0	0	1	317	547	19	1		1	ADIPOQ	3	186572124	Silent	SNP	C	TCGA-A7-A425-01A-11D-A243-09	7620039	186572124	11450306	11	8285										
ZFYVE28	0	genome.wustl.edu	37	chr4	2307064	2307064	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ctcctggtcgtcgtactgcaTggagcaggccagctctgcat	12	13	1	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	4	2307064	2307064	T	C	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	missense	c.1003	p.M335V	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	29	0	0	9	8	47.06	-	-	-	C	2307064	T	C	2307064	3	2	142	1	0	0	0	0	1	0	0	0	17766	1464	51	5	1684	5	ZFYVE28	4	2307064	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09		2307064	188847212	12	8286										
LRBA	0	genome.wustl.edu	37	chr4	151231452	151231452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gaatatagcggttgtctgaaGtgatgacaaagcactgggaa	13	5	1	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	4	151231452	151231452	G	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.7811	p.T2604N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	47	0	0	12	3	20	-	-	-	T	151231452	G	T	151231452	3	4	142	1	0	0	0	0	1	0	0	0	8997	1029	36	4	804	4	LRBA	4	151231452	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	148924388	151231452	39922824	13	8287										
RELL2	0	genome.wustl.edu	37	chr5	141017339	141017339	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ggccaggtggtcagggtgggAgaaaccaaaaagggagaggg	20	5	1	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	5	141017339	141017339	A	C	SNP	RELL2	ENST00000518025	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.593	-	-	-	no_errors	RELL2	HGNC	ENSG00000164620	9	0	0	9	12	57.14	-	-	-	C	141017339	A	C	141017339	1	2	142	0	1	0	0	0	0	0	0	0	13302	319	11	5		5	RELL2	5	141017339	RNA	SNP	A	TCGA-A7-A425-01A-11D-A243-09		141017339	39897921	14	8288										
ZNF311	0	genome.wustl.edu	37	chr6	28966539	28966539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gagcagcttagggactccctGtcctgtggatcctgcacaca	11	13	0	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	6	28966539	28966539	G	T	SNP	ZNF311	ENST00000377179	human	ensembl	69_37n	-1	known	missense	c.387	p.D129E	0.001	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935	31	0	0	29	4	12.12	-	-	-	T	28966539	G	T	28966539	3	4	142	1	0	0	0	0	1	0	0	0	17930	1368	48	4	1621	4	ZNF311	6	28966539	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09		28966539	142148528	15	8289										
FAM120B	0	genome.wustl.edu	37	chr6	170627674	170627674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tacaggccctgaatccaggcGagaagttcccatgtgttcag	11	11	1	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	6	170627674	170627674	G	A	SNP	FAM120B	ENST00000537664	human	ensembl	69_37n	1	known	missense	c.1265	p.R422Q	0.000	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584	42	0	0	28	5	15.15	-	-	-	A	170627674	G	A	170627674	3	1	142	1	0	0	0	0	1	0	0	0	5457	1058	37	1	1198	1	FAM120B	6	170627674	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	141661135	170627674	487393	16	8290			1	14		2	2	18	N	T_G	2.031846e-05
FAM120B	0	genome.wustl.edu	37	chr6	170627691	170627691	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ggcgagaagttcccatgtgtTcagaccctgaacccaggcaa	11	12	1	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	6	170627691	170627691	T	A	SNP	FAM120B	ENST00000537664	human	ensembl	69_37n	1	known	missense	c.1282	p.S428T	0.000	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584	43	0	0	34	8	19.05	-	-	-	A	170627691	T	A	170627691	3	1	142	1	0	0	0	0	1	0	0	0	5457	1783	62	5	1215	5	FAM120B	6	170627691	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09	17	170627691	487376	17	8291			1	14		2	2	18	N	T_G	2.031846e-05
RECQL4	0	genome.wustl.edu	37	chr8	145742025	145742025	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ctggggctcagggagctgtgGaggctcatcactgacttttt	14	9	3	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	8	145742025	145742025	G	A	SNP	RECQL4	ENST00000428558	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RECQL4	HGNC	ENSG00000160957	59	0	0	43	13	23.21	-	-	-	A	145742025	G	A	145742025	1	1	142	0	1	0	0	0	0	0	0	0	13285	1174	41	2		2	RECQL4	8	145742025	RNA	SNP	G	TCGA-A7-A425-01A-11D-A243-09		145742025	621997	18	8292										
CNTNAP3	0	genome.wustl.edu	37	chr9	39074000	39074000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	caaaataaatatcaccactgCtatcacacctagggagagaa	6	10	2	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	9	39074000	39074000	C	A	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.3754	p.A1252S	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	25	0	0	20	5	20	-	-	-	A	39074000	C	A	39074000	3	1	142	1	0	0	0	0	1	0	0	0	3678	797	28	4	116	4	CNTNAP3	9	39074000	Missense_Mutation	SNP	C	TCGA-A7-A425-01A-11D-A243-09		39074000	102139431	19	8293										
KIAA0368	0	genome.wustl.edu	37	chr9	114182309	114182309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	aaacttacggatctcctgcaGccagtagcagcaaatatctg	8	11	2	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	9	114182309	114182309	G	T	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.2081	p.A694D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	31	0	0	21	4	16	-	-	-	T	114182309	G	T	114182309	3	4	142	1	0	0	0	0	1	0	0	0	8223	971	34	4	4112	4	KIAA0368	9	114182309	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	75108309	114182309	27031122	20	8294										
PLCE1	0	genome.wustl.edu	37	chr10	95791183	95791183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	acaattttatgaaatgtacaActctgttgctgaggaagact	8	6	1	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	10	95791183	95791183	A	G	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.380	p.N127S	0.278	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	24	0	0	8	4	33.33	-	-	-	G	95791183	A	G	95791183	3	3	142	1	0	0	0	0	1	0	0	0	12108	43	2	5	382	5	PLCE1	10	95791183	Missense_Mutation	SNP	A	TCGA-A7-A425-01A-11D-A243-09		95791183	39743564	21	8295										
DOCK1	0	genome.wustl.edu	37	chr10	129202640	129202640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tcaaagtgatcaggcccaagCctgactattttgctgttggc	10	10	2	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	10	129202640	129202640	C	G	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.4006	p.P1336A	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	52	0	0	35	13	27.08	-	-	-	G	129202640	C	G	129202640	3	3	142	1	0	0	0	0	1	0	0	0	4719	739	26	4	4164	4	DOCK1	10	129202640	Missense_Mutation	SNP	C	TCGA-A7-A425-01A-11D-A243-09	33411457	129202640	6332107	22	8296										
XPO4	0	genome.wustl.edu	37	chr13	21417130	21417130	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	agcattgaggttttcccgccTgctgaactcctgcagaactt	9	12	0	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	13	21417130	21417130	T	G	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	silent	c.631	p.R211	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	54	0	0	25	8	24.24	-	-	-	G	21417130	T	G	21417130	2	3	142	1	0	0	0	0	0	0	0	1	17543	1579	55	5		5	XPO4	13	21417130	Silent	SNP	T	TCGA-A7-A425-01A-11D-A243-09		21417130	93752748	23	8297										
SEC23A	0	genome.wustl.edu	37	chr14	39545203	39545203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	catgccacgatcttataggtGtcttcaactcatctccaacc	5	14	5	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	14	39545203	39545203	G	T	SNP	SEC23A	ENST00000307712	human	ensembl	69_37n	-1	known	missense	c.923	p.T308K	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934	47	0	0	30	4	11.76	-	-	-	T	39545203	G	T	39545203	3	4	142	1	0	0	0	0	1	0	0	0	14079	1377	48	4	1426	4	SEC23A	14	39545203	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09		39545203	67804337	24	8298										
TP53BP1	0	genome.wustl.edu	37	chr15	43748472	43748472	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ttctccactccctccaaaggTtcacaagaaacatcaactct	3	15	4	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	15	43748472	43748472	T	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.2334	p.E778D	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	27	0	0	16	4	20	-	-	-	A	43748472	T	A	43748472	3	1	142	1	0	0	0	0	1	0	0	0	16479	1722	60	5	3667	5	TP53BP1	15	43748472	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09		43748472	58782920	25	8299										
HAP1	0	genome.wustl.edu	37	chr17	39883371	39883371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ttctgagctcctcagccagcGtctcctggaaaccaggaaga	10	13	3	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	17	39883371	39883371	G	A	SNP	HAP1	ENST00000310778	human	ensembl	69_37n	-1	known	missense	c.1457	p.T486M	0.099	NULL	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805	24	0	0	15	6	28.57	-	-	-	A	39883371	G	A	39883371	3	1	142	1	0	0	0	0	1	0	0	0	7004	1145	40	1	570	1	HAP1	17	39883371	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09		39883371	41311839	26	8300										
MTMR4	0	genome.wustl.edu	37	chr17	56591766	56591766	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gagacgcgggcggtcaggctCatggtcgcgggcggtctggg	21	10	3	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	17	56591766	56591766	C	G	SNP	MTMR4	ENST00000582390	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	MTMR4	HGNC	ENSG00000108389	22	0	0	21	7	24.14	-	-	-	G	56591766	C	G	56591766	3	3	142	1	0	0	0	0	1	0	0	0	10018	841	29	2		2	MTMR4	17	56591766	Missense_Mutation	SNP	C	TCGA-A7-A425-01A-11D-A243-09	16708395	56591766	24603444	27	8301										
MED13	0	genome.wustl.edu	37	chr17	60043939	60043939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tttctgatagtttctttgatGcagtagatccaactctcatg	7	8	3	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	17	60043939	60043939	G	T	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.4265	p.A1422E	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	43	0	0	32	4	11.11	-	-	-	T	60043939	G	T	60043939	3	4	142	1	0	0	0	0	1	0	0	0	9501	1319	46	4	2307	4	MED13	17	60043939	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	3452173	60043939	21151271	28	8302										
CSH2	0	genome.wustl.edu	37	chr17	61949664	61949664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	tgaggatctgcccagtccggCggctgccgtcttccagcctc	12	16	2	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	17	61949664	61949664	C	T	SNP	CSH2	ENST00000392886	human	ensembl	69_37n	-1	known	missense	c.476	p.R159H	0.895	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH2	HGNC	ENSG00000213218	112	0	0	91	21	18.75	-	-	-	T	61949664	C	T	61949664	3	4	142	1	0	0	0	0	1	0	0	0	3973	768	27	1	181	1	CSH2	17	61949664	Missense_Mutation	SNP	C	TCGA-A7-A425-01A-11D-A243-09	1905725	61949664	19245546	29	8303										
EMILIN2	0	genome.wustl.edu	37	chr18	2885065	2885065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gagggggagattgccaagaaGgtcccaaagaccccgtgaag	15	9	0	4			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	18	2885065	2885065	G	T	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.361	p.G121C	1.000	NULL	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	30	0	0	31	4	11.43	-	-	-	T	2885065	G	T	2885065	3	4	142	1	0	0	0	0	1	0	0	0	5131	1000	35	4	371	4	EMILIN2	18	2885065	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09		2885065	75192183	30	8304										
KLHL14	0	genome.wustl.edu	37	chr18	30260233	30260233	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	cttgttttcgagcccagacaTccattactgggtcatagcaa	8	11	1	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	18	30260233	30260233	T	A	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	missense	c.1487	p.D496V	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	26	0	0	21	4	16	-	-	-	A	30260233	T	A	30260233	3	1	142	1	0	0	0	0	1	0	0	0	8423	1435	50	5	411	5	KLHL14	18	30260233	Missense_Mutation	SNP	T	TCGA-A7-A425-01A-11D-A243-09	27375168	30260233	47817015	31	8305										
ARHGAP33	0	genome.wustl.edu	37	chr19	36273541	36273541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	aggaggagcgtctggtgcggGtgcacgatgtcatccagcag	17	9	2	0			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	19	36273541	36273541	G	T	SNP	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	missense	c.1273	p.V425L	0.986	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	25	0	0	25	14	35	-	-	-	T	36273541	G	T	36273541	3	4	142	1	0	0	0	0	1	0	0	0	884	1261	44	4	1327	4	ARHGAP33	19	36273541	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09		36273541	22855442	32	8306										
ZNF790	0	genome.wustl.edu	37	chr19	37310012	37310012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	gccagtatgaattcgctgatGtcgagcaaggtgtgagctcc	13	9	0	3			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	19	37310012	37310012	G	A	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1234	p.H412Y	0.748	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	54	0	0	27	7	20.59	-	-	-	A	37310012	G	A	37310012	3	1	142	1	0	0	0	0	1	0	0	0	18255	1377	48	4	680	4	ZNF790	19	37310012	Missense_Mutation	SNP	G	TCGA-A7-A425-01A-11D-A243-09	1036471	37310012	21818971	33	8307										
GART	0	genome.wustl.edu	37	chr21	34889372	34889372	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	ccaccagtaatatgggcaaaGgctttgacatgtcctgaacg	10	10	0	2			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	21	34889372	34889372	G	T	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	silent	c.2031	p.A677	0.976	pfam_AIR_synth_C,superfamily_AIR_synth_C,tigrfam_PurM_cligase	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	37	0	0	18	3	14.29	-	-	-	T	34889372	G	T	34889372	2	4	142	1	0	0	0	0	0	0	0	1	6293	987	35	4		4	GART	21	34889372	Silent	SNP	G	TCGA-A7-A425-01A-11D-A243-09		34889372	13240523	34	8308										
TMPRSS3	0	genome.wustl.edu	37	chr21	43792094	43792094	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	aaaataggccttaaacgagtCattcctagattaacctcccc	5	12	1	1			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	21	43792094	43792094	C	A	SNP	TMPRSS3	ENST00000474596	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	TMPRSS3	HGNC	ENSG00000160183	11	0	0	6	9	60	-	-	-	A	43792094	C	A	43792094	1	1	142	0	1	0	0	0	0	0	0	0	16343	841	29	2		2	TMPRSS3	21	43792094	RNA	SNP	C	TCGA-A7-A425-01A-11D-A243-09	8902722	43792094	4337801	35	8309										
ZC4H2	0	genome.wustl.edu	37	chrX	64137066	64137066	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	aagaattttagtatatgtggGagacagaagtggagaaagct	13	2	0	4			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	X	64137066	64137066	G	A	SNP	ZC4H2	ENST00000488608	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC4H2	HGNC	ENSG00000126970	8	0	0	4	4	50	-	-	-	A	64137066	G	A	64137066	1	1	142	0	1	0	0	0	0	0	0	0	17674	1189	41	2		2	ZC4H2	23	64137066	RNA	SNP	G	TCGA-A7-A425-01A-11D-A243-09		64137066	91133494	36	8310										
DLG3	0	genome.wustl.edu	37	chrX	69712379	69712379	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.998683936524967	0.608333333333333	3.04166666666667	0	1	1	0	attccaaaacagggtggaaaAgaaagaaagagctcgattga	11	5	0	4			TCGA-A7-A425-01A-11D-A243-09	TCGA-A7-A425-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c67181dd-3934-4e63-b0b0-ddb61a5d1306	1a65e4d5-1db5-44b8-8c9c-c014a6e22760	X	69712379	69712379	A	G	SNP	DLG3	ENST00000194900	human	ensembl	69_37n	1	known	missense	c.1760	p.K587R	1.000	superfamily_SH3_domain,smart_SH3_domain,pirsf_M-assoc_guanylate_kinase,pfscan_SH3_domain	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG3	HGNC	ENSG00000082458	40	0	0	41	5	10.87	-	-	-	G	69712379	A	G	69712379	3	3	142	1	0	0	0	0	1	0	0	0	4592	72	3	5	1890	5	DLG3	23	69712379	Missense_Mutation	SNP	A	TCGA-A7-A425-01A-11D-A243-09	5575313	69712379	85558181	37	8311										
CHD5	0	genome.wustl.edu	37	chr1	6191719	6191719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ctgtcgattgcctcctgccgGaggcccccggtgatgccacc	12	17	0	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	1	6191719	6191719	G	T	SNP	CHD5	ENST00000462991	human	ensembl	69_37n	-1	known	missense	c.1381	p.P461T	0.611	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_DUF1086,pfam_DUF1087,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHD5	HGNC	ENSG00000116254	66	0	0	35	4	10.26	-	-	-	T	6191719	G	T	6191719	3	4	143	1	0	0	0	0	1	0	0	0	3357	1161	41	2	2714	2	CHD5	1	6191719	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		6191719	243058902	1	8312										
SELP	0	genome.wustl.edu	37	chr1	169578896	169578896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	gagcaatccatgcttccgtgGacaggactctccagcggctc	11	14	1	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	1	169578896	169578896	G	A	SNP	SELP	ENST00000446728	human	ensembl	69_37n	-1	known	missense	c.991	p.P331S	0.007	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SELP	HGNC	ENSG00000174175	67	0	0	33	4	10.81	-	-	-	A	169578896	G	A	169578896	3	1	143	1	0	0	0	0	1	0	0	0	14107	1161	41	2	1349	2	SELP	1	169578896	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	163387177	169578896	79671725	2	8313										
RASGRP3	0	genome.wustl.edu	37	chr2	33752360	33752360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ttttcccagactggacagagGagaacaaagtgaacattgtg	11	7	0	4			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	2	33752360	33752360	G	A	SNP	RASGRP3	ENST00000402538	human	ensembl	69_37n	1	known	missense	c.964	p.E322K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	61	0	0	33	4	10.81	-	-	-	A	33752360	G	A	33752360	3	1	143	1	0	0	0	0	1	0	0	0	13159	1175	41	2	994	2	RASGRP3	2	33752360	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		33752360	209447013	3	8314										
MAP2	0	genome.wustl.edu	37	chr2	210570443	210570443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tatctcttcttcagcacggcGgaccaccagtaggtttattt	8	11	3	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	2	210570443	210570443	G	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.4724	p.R1575Q	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	49	0	0	40	8	16.67	-	-	-	A	210570443	G	A	210570443	3	1	143	1	0	0	0	0	1	0	0	0	9306	1116	39	1	4929	1	MAP2	2	210570443	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	176818083	210570443	32628930	4	8315										
ITGA9	0	genome.wustl.edu	37	chr3	37544783	37544783	+	Frame_Shift_Del	DEL	C	C	-													0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	acgaagtgatcatgaacaggCggtacacctacctgggtgag							TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	37544783	37544783	C	-	DEL	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	frame_shift_del	c.727	p.R243fs	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	35	0	0	11	2	15.38	-	-	-	-	37544783	C	-	37544783	7	5	143	1	0	1	0	1	0	0	0	0	7937	759	27	0	749	0	ITGA9	3	37544783	Frame_Shift_Del	DEL	C	TCGA-A7-A426-01A-22D-A243-09		37544783	160477647	5	8316										
APPL1	0	genome.wustl.edu	37	chr3	57303610	57303610	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ttgatagctgcttccagtagAccaaaccaagccagtagtga	9	10	0	3			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	57303610	57303610	A	T	SNP	APPL1	ENST00000288266	human	ensembl	69_37n	1	known	missense	c.2025	p.R675S	1.000	NULL	pfam_PTyr_interaction_dom,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL1	HGNC	ENSG00000157500	78	0	0	32	6	15.79	-	-	-	T	57303610	A	T	57303610	3	4	143	1	0	0	0	0	1	0	0	0	819	272	10	5	2111	5	APPL1	3	57303610	Missense_Mutation	SNP	A	TCGA-A7-A426-01A-22D-A243-09	19758827	57303610	140718820	6	8317										
ALG1L	0	genome.wustl.edu	37	chr3	125649445	125649445	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tcctcaaagaccaggccattTtcttcatgtttcaccagctc	5	14	4	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	125649445	125649445	T	A	SNP	ALG1L	ENST00000340333	human	ensembl	69_37n	-1	known	missense	c.303	p.E101D	0.999	NULL	NULL	-	no_errors	ALG1L	HGNC	ENSG00000189366	162	0	0	62	23	27.06	-	-	-	A	125649445	T	A	125649445	3	1	143	1	0	0	0	0	1	0	0	0	517	1838	64	5	268	5	ALG1L	3	125649445	Missense_Mutation	SNP	T	TCGA-A7-A426-01A-22D-A243-09	68345835	125649445	72372985	7	8318										
SLC30A9	0	genome.wustl.edu	37	chr4	42051496	42051496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ttatctgatacttgtaatcaGgtgaggactaaagctttttt	8	5	2	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	42051496	42051496	G	T	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	missense	c.840	p.Q280H	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	51	0	0	33	4	10.81	-	-	-	T	42051496	G	T	42051496	3	4	143	1	0	0	0	0	1	0	0	0	14651	1014	35	4	874	4	SLC30A9	4	42051496	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		42051496	149102780	8	8319										
TSPAN5	0	genome.wustl.edu	37	chr4	99399888	99399888	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cgccacatcgctctcgacttGcattggaatctgtgcaattg	9	12	2	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	99399888	99399888	G	T	SNP	TSPAN5	ENST00000305798	human	ensembl	69_37n	-1	known	missense	c.524	p.A175E	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785	56	0	0	33	5	13.16	-	-	-	T	99399888	G	T	99399888	3	4	143	1	0	0	0	0	1	0	0	0	16746	1319	46	4	298	4	TSPAN5	4	99399888	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	57348392	99399888	91754388	9	8320										
SORBS2	0	genome.wustl.edu	37	chr4	186528172	186528172	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ggtaaggctgggctgcagccGaggccacacccgcgtgagtg	17	12	0	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	186528172	186528172	G	A	SNP	SORBS2	ENST00000498125	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	SORBS2	HGNC	ENSG00000154556	37	0	0	25	4	13.79	-	-	-	A	186528172	G	A	186528172	1	1	143	0	1	0	0	0	0	0	0	0	15017	1073	37	1		1	SORBS2	4	186528172	RNA	SNP	G	TCGA-A7-A426-01A-22D-A243-09	87128284	186528172	4626104	10	8321										
SEMA6A	0	genome.wustl.edu	37	chr5	115818155	115818156	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	atacctgggcttaggaactcINSgttcatcaggaactggtgtc							TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	5	115818155	115818156	-	G	INS	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1079_1078	p.R360fs	0.994:0.966	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	26	0	0	16	3	15.79	-	-	-	G	115818156	-	G	115818155	7	5	143	1	0	1	1	0	0	0	0	0	14127	884	31	0	2049	0	SEMA6A	5	115818155	Frame_Shift_Ins	INS	-	TCGA-A7-A426-01A-22D-A243-09		115818155	65097105	11	8322										
SPRY4	0	genome.wustl.edu	37	chr5	141694224	141694224	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	aagaagtgcttgtccagctcGggtgggaccgccgggccctt	15	12	0	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	5	141694224	141694224	G	A	SNP	SPRY4	ENST00000344120	human	ensembl	69_37n	-1	known	silent	c.519	p.P173	0.003	NULL	pfam_Sprouty	-	no_errors	SPRY4	HGNC	ENSG00000187678	53	0	0	27	5	15.62	-	-	-	A	141694224	G	A	141694224	2	1	143	1	0	0	0	0	0	0	0	1	15199	1103	39	1		1	SPRY4	5	141694224	Silent	SNP	G	TCGA-A7-A426-01A-22D-A243-09	25876069	141694224	39221036	12	8323										
GTPBP2	0	genome.wustl.edu	37	chr6	43593284	43593284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cattccccaggacggccacaCggaggtctaggaactgtgga	13	12	1	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	6	43593284	43593284	C	A	SNP	GTPBP2	ENST00000307126	human	ensembl	69_37n	-1	known	missense	c.521	p.R174L	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	GTPBP2	HGNC	ENSG00000172432	62	0	0	29	4	11.76	-	-	-	A	43593284	C	A	43593284	3	1	143	1	0	0	0	0	1	0	0	0	6931	536	19	3	1319	3	GTPBP2	6	43593284	Missense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09		43593284	127521783	13	8324										
CLDN4	0	genome.wustl.edu	37	chr7	73245798	73245798	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ctcgtcatcatcagcatcatCgtggctgctctgggcgtgct	11	13	5	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	7	73245798	73245798	C	A	SNP	CLDN4	ENST00000340958	human	ensembl	69_37n	1	known	silent	c.267	p.I89	0.998	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143	74	0	0	36	7	16.28	-	-	-	A	73245798	C	A	73245798	2	1	143	1	0	0	0	0	0	0	0	1	3517	874	31	3		3	CLDN4	7	73245798	Silent	SNP	C	TCGA-A7-A426-01A-22D-A243-09		73245798	85892865	14	8325										
ARPC1A	0	genome.wustl.edu	37	chr7	98942098	98942098	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ttgctgtgggaagtggagcaCgactcatttctgtttgttac	12	7	2	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	7	98942098	98942098	C	T	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	nonsense	c.352	p.R118*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	37	0	0	22	5	18.52	-	-	-	T	98942098	C	T	98942098	4	4	143	1	0	0	0	0	0	1	0	0	973	528	19	1	362	1	ARPC1A	7	98942098	Nonsense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09	25696300	98942098	60196565	15	8326										
NCOA2	0	genome.wustl.edu	37	chr8	71087081	71087081	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tgcacttcatctatgttggcAgctgctgctttctctgcaat	8	11	3	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	8	71087081	71087081	A	C	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.273	p.A91	0.992	superfamily_HLH_DNA-bd,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	75	0	0	43	11	20.37	-	-	-	C	71087081	A	C	71087081	2	2	143	1	0	0	0	0	0	0	0	1	10301	175	7	5		5	NCOA2	8	71087081	Silent	SNP	A	TCGA-A7-A426-01A-22D-A243-09		71087081	75276941	16	8327										
C10orf71	0	genome.wustl.edu	37	chr10	50532913	50532913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	atgagaaggagaatgtgatgCggaaggatgagctgcagtac	16	4	0	4			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	50532913	50532913	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.2323	p.R775W	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	44	0	0	25	8	24.24	-	-	-	T	50532913	C	T	50532913	3	4	143	1	0	0	0	0	1	0	0	0	1624	759	27	1	2325	1	C10orf71	10	50532913	Missense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09		50532913	85001834	17	8328										
CDHR1	0	genome.wustl.edu	37	chr10	85974550	85974550	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tctggcgcaacaagaagttgCgctctgacagggctctagtc	12	11	3	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	85974550	85974550	C	A	SNP	CDHR1	ENST00000459673	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CDHR1	HGNC	ENSG00000148600	8	0	0	5	4	44.44	-	-	-	A	85974550	C	A	85974550	1	1	143	0	1	0	0	0	0	0	0	0	3147	783	27	3		3	CDHR1	10	85974550	RNA	SNP	C	TCGA-A7-A426-01A-22D-A243-09	35441637	85974550	49560197	18	8329										
BMPR1A	0	genome.wustl.edu	37	chr10	88635786	88635786	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	caattgaacaatgcctcagcTatacatttacatcagattat	4	9	2	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	88635786	88635786	T	A	SNP	BMPR1A	ENST00000224764	human	ensembl	69_37n	1	known	missense	c.11	p.L4Q	0.204	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR1A	HGNC	ENSG00000107779	135	0	0	69	24	25.81	-	-	-	A	88635786	T	A	88635786	3	1	143	1	0	0	0	0	1	0	0	0	1474	1522	53	5	13	5	BMPR1A	10	88635786	Missense_Mutation	SNP	T	TCGA-A7-A426-01A-22D-A243-09	2661236	88635786	46898961	19	8330										
DCDC1	0	genome.wustl.edu	37	chr11	31263112	31263112	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ctcccttagagacccaaagtAgtcctcgcaaaggtgtgatg	10	11	0	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	11	31263112	31263112	A	G	SNP	DCDC1	ENST00000534722	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DCDC1	HGNC	ENSG00000188682	37	0	0	33	4	10.81	-	-	-	G	31263112	A	G	31263112	1	3	143	0	1	0	0	0	0	0	0	0	4315	435	15	5		5	DCDC1	11	31263112	RNA	SNP	A	TCGA-A7-A426-01A-22D-A243-09		31263112	103743404	20	8331										
TPCN2	0	genome.wustl.edu	37	chr11	68845965	68845965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cccagcacccgccgaggcccGagtaccagtctccgtttctg	10	18	2	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	11	68845965	68845965	G	A	SNP	TPCN2	ENST00000294309	human	ensembl	69_37n	1	known	missense	c.1246	p.E416K	0.411	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	106	0	0	45	14	23.73	-	-	-	A	68845965	G	A	68845965	3	1	143	1	0	0	0	0	1	0	0	0	16492	1059	37	1	1300	1	TPCN2	11	68845965	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	37582853	68845965	66160551	21	8332										
CSRP2	0	genome.wustl.edu	37	chr12	77253422	77253422	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	aacagtttttgtgccagggcTggaagagatgaatgtgtcag	14	5	1	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	77253422	77253422	T	C	SNP	CSRP2	ENST00000311083	human	ensembl	69_37n	-1	known	splice_site	c.412-2	e4-2	0.998	-	-	-	no_errors	CSRP2	HGNC	ENSG00000175183	66	0	0	35	8	18.6	-	-	-	C	77253422	T	C	77253422	5	2	143	1	0	0	0	0	0	0	1	0	3999	1594	55	5	179	5	CSRP2	12	77253422	Splice_Site	SNP	T	TCGA-A7-A426-01A-22D-A243-09		77253422	56598473	22	8333										
HAL	0	genome.wustl.edu	37	chr12	96389632	96389632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cagcccacagtgagctgcgcGtcctggcagggcactgccag	14	15	0	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	96389632	96389632	G	T	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.57	p.D19E	0.003	NULL	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	55	0	0	23	4	14.81	-	-	-	T	96389632	G	T	96389632	3	4	143	1	0	0	0	0	1	0	0	0	6998	1136	40	3	1996	3	HAL	12	96389632	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	19136210	96389632	37462263	23	8334										
TMEM120B	0	genome.wustl.edu	37	chr12	122199620	122199620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	caccctgaccattcgggagaGcattctcatcagcaacggct	9	14	2	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	122199620	122199620	G	T	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	missense	c.527	p.S176I	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	52	0	0	11	3	21.43	-	-	-	T	122199620	G	T	122199620	3	4	143	1	0	0	0	0	1	0	0	0	16129	971	34	4	549	4	TMEM120B	12	122199620	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	25809988	122199620	11652275	24	8335										
SLC24A4	0	genome.wustl.edu	37	chr14	92959216	92959216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	agccccaggaagccttgatcGagggacaaggaggaaggcag	16	9	0	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	14	92959216	92959216	G	A	SNP	SLC24A4	ENST00000525557	human	ensembl	69_37n	1	putative	missense	c.1358	p.R453Q	0.000	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC24A4	HGNC	ENSG00000140090	53	0	0	33	5	13.16	-	-	-	A	92959216	G	A	92959216	3	1	143	1	0	0	0	0	1	0	0	0	14557	1073	37	1		1	SLC24A4	14	92959216	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		92959216	14390324	25	8336										
SLC28A2	0	genome.wustl.edu	37	chr15	45558340	45558340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	agagaccctggctgtggcagGaaacatctttgtgggtatgg	15	7	1	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	45558340	45558340	G	C	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	1	known	missense	c.923	p.G308A	1.000	pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	72	0	0	34	14	29.17	-	-	-	C	45558340	G	C	45558340	3	2	143	1	0	0	0	0	1	0	0	0	14621	1174	41	2	957	2	SLC28A2	15	45558340	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		45558340	56973052	26	8337										
ADPGK	0	genome.wustl.edu	37	chr15	73044812	73044812	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	aggatattccctctctgtgcCattctactactggcttgttt	7	11	2	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	73044812	73044812	C	T	SNP	ADPGK	ENST00000311669	human	ensembl	69_37n	-1	known	nonsense	c.1361	p.W454*	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	54	0	0	33	4	10.81	-	-	-	T	73044812	C	T	73044812	4	4	143	1	0	0	0	0	0	1	0	0	330	595	21	4	133	4	ADPGK	15	73044812	Nonsense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09	27486472	73044812	29486580	27	8338										
TARSL2	0	genome.wustl.edu	37	chr15	102241331	102241331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ttataaatgaaggctcctctGggaaggaaaaaacagcttcc	9	8	1	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	102241331	102241331	G	A	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	silent	c.1278	p.P426	0.848	tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	45	0	0	27	4	12.9	-	-	-	A	102241331	G	A	102241331	2	1	143	1	0	0	0	0	0	0	0	1	15653	1335	47	4		4	TARSL2	15	102241331	Silent	SNP	G	TCGA-A7-A426-01A-22D-A243-09	29196519	102241331	290061	28	8339										
ATP2A1	0	genome.wustl.edu	37	chr16	28909621	28909621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	caccacccgggtgccactgaCggggccggtgaaggaaaaga	15	12	0	3			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	28909621	28909621	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.1613	p.T538M	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	70	0	0	66	25	27.47	-	-	-	T	28909621	C	T	28909621	3	4	143	1	0	0	0	0	1	0	0	0	1140	536	19	1	1667	1	ATP2A1	16	28909621	Missense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09		28909621	61445132	29	8340										
FAM65A	0	genome.wustl.edu	37	chr16	67579729	67579729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tgctgtcagcacccagctccGgagcctgtcactgggcccta	11	16	2	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	67579729	67579729	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.3413	p.R1138Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	57	0	0	14	6	30	-	-	-	A	67579729	G	A	67579729	3	1	143	1	0	0	0	0	1	0	0	0	5644	1116	39	1	3423	1	FAM65A	16	67579729	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09	38670108	67579729	22775024	30	8341										
CDH1	0	genome.wustl.edu	37	chr16	68862095	68862095	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	agttctgattctgctgctctTgctgtttcttcggaggagag	12	8	4	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	68862095	68862095	T	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.2183	p.L728*	0.983	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	164	0	0	64	24	27.27	-	-	-	A	68862095	T	A	68862095	4	1	143	1	0	0	0	0	0	1	0	0	3124	1821	63	5	2237	5	CDH1	16	68862095	Nonsense_Mutation	SNP	T	TCGA-A7-A426-01A-22D-A243-09	1282366	68862095	21492658	31	8342										
NCOR1	0	genome.wustl.edu	37	chr17	16075275	16075275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cactggggatgggcctggatGaaacggttcataactagttc	13	8	1	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	16075275	16075275	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.277	p.H93Y	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	89	0	0	33	4	10.81	-	-	-	A	16075275	G	A	16075275	3	1	143	1	0	0	0	0	1	0	0	0	10307	1290	45	2	7217	2	NCOR1	17	16075275	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		16075275	65119935	32	8343										
TRIM16L	0	genome.wustl.edu	37	chr17	18602476	18602476	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tcttgccacagtttttggcaAaatgctggcaattcccagga	9	10	1	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	18602476	18602476	A	G	SNP	TRIM16L	ENST00000449697	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.726	-	-	-	no_errors	TRIM16L	HGNC	ENSG00000108448	39	0	0	32	5	13.51	-	-	-	G	18602476	A	G	18602476	1	3	143	0	1	0	0	0	0	0	0	0	16588	29	1	5		5	TRIM16L	17	18602476	RNA	SNP	A	TCGA-A7-A426-01A-22D-A243-09	2527201	18602476	62592734	33	8344										
AANAT	0	genome.wustl.edu	37	chr17	74464756	74464756	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	cttgctgttctccaacaggtGctgggaggccctccttggct	12	13	1	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	74464756	74464756	G	T	SNP	AANAT	ENST00000250615	human	ensembl	69_37n	1	known	silent	c.63	p.V21	0.228	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	AANAT	HGNC	ENSG00000129673	35	0	0	32	4	11.11	-	-	-	T	74464756	G	T	74464756	2	4	143	1	0	0	0	0	0	0	0	1	18	1306	46	4		4	AANAT	17	74464756	Silent	SNP	G	TCGA-A7-A426-01A-22D-A243-09	55862280	74464756	6730454	34	8345										
GCDH	0	genome.wustl.edu	37	chr19	13010643	13010643	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	tcttgagaggagagtgacatGgaagcaactccgtctgctgc	13	9	2	3			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	13010643	13010643	G	T	SNP	GCDH	ENST00000588242	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCDH	HGNC	ENSG00000105607	38	0	0	16	3	15.79	-	-	-	T	13010643	G	T	13010643	1	4	143	0	1	0	0	0	0	0	0	0	6337	1363	47	4		4	GCDH	19	13010643	RNA	SNP	G	TCGA-A7-A426-01A-22D-A243-09		13010643	46118340	35	8346										
ZNF676	0	genome.wustl.edu	37	chr19	22364026	22364026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	acatttgtaggaattctctcTagtataaattctttcatgtt	5	6	4	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	22364026	22364026	T	C	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.493	p.R165G	0.900	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	82	0	0	45	13	22.41	-	-	-	C	22364026	T	C	22364026	3	2	143	1	0	0	0	0	1	0	0	0	18179	1530	53	5	1277	5	ZNF676	19	22364026	Missense_Mutation	SNP	T	TCGA-A7-A426-01A-22D-A243-09	9353383	22364026	36764957	36	8347										
RCN3	0	genome.wustl.edu	37	chr19	50045943	50045943	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	gaggtgggccactgggtgctGccccctgcccaggaccagcc	15	16	0	0			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	50045943	50045943	G	T	SNP	RCN3	ENST00000270645	human	ensembl	69_37n	1	known	silent	c.813	p.L271	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN3	HGNC	ENSG00000142552	60	0	0	32	7	17.95	-	-	-	T	50045943	G	T	50045943	2	4	143	1	0	0	0	0	0	0	0	1	13264	1306	46	4		4	RCN3	19	50045943	Silent	SNP	G	TCGA-A7-A426-01A-22D-A243-09	27681917	50045943	9083040	37	8348										
ZSWIM3	0	genome.wustl.edu	37	chr20	44506742	44506742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	ctgtgccacaatgagtgggaGgtggtacagaactccaccca	12	11	0	2			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	20	44506742	44506742	G	T	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	1	known	missense	c.1545	p.E515D	1.000	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	41	0	0	18	3	14.29	-	-	-	T	44506742	G	T	44506742	3	4	143	1	0	0	0	0	1	0	0	0	18333	991	35	4	1551	4	ZSWIM3	20	44506742	Missense_Mutation	SNP	G	TCGA-A7-A426-01A-22D-A243-09		44506742	18518778	38	8349										
COL6A1	0	genome.wustl.edu	37	chr21	47423622	47423622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.532552083333333	0	0.568055555555556	1	1	0	gctatgtgacccgcttctacCgcgaggcctcgtccggcgct	12	16	1	1			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	21	47423622	47423622	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	1	known	missense	c.2782	p.R928C	0.892	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	107	0	0	43	5	10.42	-	-	-	T	47423622	C	T	47423622	3	4	143	1	0	0	0	0	1	0	0	0	3729	652	23	1	2920	1	COL6A1	21	47423622	Missense_Mutation	SNP	C	TCGA-A7-A426-01A-22D-A243-09		47423622	706273	39	8350										
TCTEX1D1	0	genome.wustl.edu	37	chr1	67242962	67242962	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	agcccaggtcaaggacttgaTgattccacggtataaactaa	9	9	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	67242962	67242962	T	C	SNP	TCTEX1D1	ENST00000282670	human	ensembl	69_37n	1	known	missense	c.365	p.M122T	1.000	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D1	HGNC	ENSG00000152760	37	0	0	64	13	16.88	-	-	-	C	67242962	T	C	67242962	3	2	144	1	0	0	0	0	1	0	0	0	15814	1464	51	5	379	5	TCTEX1D1	1	67242962	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09		67242962	182007659	1	8351										
THEM5	0	genome.wustl.edu	37	chr1	151819720	151819721	+	Frame_Shift_Ins	INS	-	-	C													0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aggcaggcaggggaggcaggINSaggcaggaggcaggcagggg							TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	151819720	151819721	-	C	INS	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_ins	c.659_658	p.S220fs	0.672:0.662	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	47	0	0	58	7	10.77	-	-	-	C	151819721	-	C	151819720	7	5	144	1	0	1	1	0	0	0	0	0	15954	1189	41	0		0	THEM5	1	151819720	Frame_Shift_Ins	INS	-	TCGA-A7-A4SA-01A-11D-A25Q-09	84576758	151819720	97430901	2	8352										
OR10J5	0	genome.wustl.edu	37	chr1	159505095	159505095	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gacacaggtggcaaaggtctTcttccggccctcagctgagg	13	12	3	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	159505095	159505095	T	C	SNP	OR10J5	ENST00000334857	human	ensembl	69_37n	-1	known	missense	c.703	p.K235E	0.996	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10J5	HGNC	ENSG00000184155	37	0	0	72	21	22.58	-	-	-	C	159505095	T	C	159505095	3	2	144	1	0	0	0	0	1	0	0	0	10985	1792	62	5	228	5	OR10J5	1	159505095	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	7685375	159505095	89745526	3	8353										
CD244	0	genome.wustl.edu	37	chr1	160808754	160808754	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgcttctccttcctctttctCctccacacacagaagcaggc	5	17	3	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	160808754	160808754	C	G	SNP	CD244	ENST00000368033	human	ensembl	69_37n	-1	known	missense	c.756	p.R252S	0.757	NULL	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like	-	no_errors	CD244	HGNC	ENSG00000122223	60	0	0	75	11	12.79	-	-	-	G	160808754	C	G	160808754	3	3	144	1	0	0	0	0	1	0	0	0	3016	854	30	2	380	2	CD244	1	160808754	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	1303659	160808754	88441867	4	8354										
FCGR3B	0	genome.wustl.edu	37	chr1	161599571	161599571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ccccttcatcaactcaccgaTatggacttctagctgcaccg	6	16	4	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	161599571	161599571	T	C	SNP	FCGR3B	ENST00000294800	human	ensembl	69_37n	-1	known	missense	c.316	p.I106V	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCGR3B	HGNC	ENSG00000162747	38	0	0	62	10	13.7	-	-	-	C	161599571	T	C	161599571	3	2	144	1	0	0	0	0	1	0	0	0	5831	1406	49	5	397	5	FCGR3B	1	161599571	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	790817	161599571	87651050	5	8355										
TNR	0	genome.wustl.edu	37	chr1	175355301	175355301	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ggaggctgcagccggaaggtGgtcctcccaccttccccgcc	13	17	0	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	175355301	175355301	G	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	silent	c.1644	p.T548	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	48	0	0	69	23	25	-	-	-	T	175355301	G	T	175355301	2	4	144	1	0	0	0	0	0	0	0	1	16433	1335	47	4		4	TNR	1	175355301	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	13755730	175355301	73895320	6	8356										
CEP350	0	genome.wustl.edu	37	chr1	180065244	180065244	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cccaacttaaatcaacctgtCtggatgaagccatgtagaat	7	10	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	180065244	180065244	C	G	SNP	CEP350	ENST00000429851	human	ensembl	69_37n	1	novel	missense	c.3514	p.L1172V	0.969	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP350	HGNC	ENSG00000135837	55	0	0	116	15	11.45	-	-	-	G	180065244	C	G	180065244	3	3	144	1	0	0	0	0	1	0	0	0	3283	900	32	2	9129	2	CEP350	1	180065244	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	4709943	180065244	69185377	7	8357										
LAX1	0	genome.wustl.edu	37	chr1	203743475	203743475	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aaggcagctctgggtggcttTtcagtgctgcagagactatg	14	8	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	203743475	203743475	T	G	SNP	LAX1	ENST00000442561	human	ensembl	69_37n	1	known	missense	c.863	p.F288C	0.004	NULL	NULL	-	no_errors	LAX1	HGNC	ENSG00000122188	40	0	0	104	20	16.13	-	-	-	G	203743475	T	G	203743475	3	3	144	1	0	0	0	0	1	0	0	0	8702	1841	64	5	926	5	LAX1	1	203743475	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	23678231	203743475	45507146	8	8358										
ETNK2	0	genome.wustl.edu	37	chr1	204116010	204116010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gggcacttgccagagggccaAggatgggatgattgcaagtc	16	8	0	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	204116010	204116010	A	C	SNP	ETNK2	ENST00000452983	human	ensembl	69_37n	-1	putative	missense	c.79	p.L27V	0.000	NULL	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	ETNK2	HGNC	ENSG00000143845	35	0	0	81	18	18.18	-	-	-	C	204116010	A	C	204116010	3	2	144	1	0	0	0	0	1	0	0	0	5311	87	3	5		5	ETNK2	1	204116010	Missense_Mutation	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09	372535	204116010	45134611	9	8359										
LBR	0	genome.wustl.edu	37	chr1	225610003	225610003	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gaaagggggaagaaggcaaaGagctttaccacaaatcataa	11	6	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	225610003	225610003	G	C	SNP	LBR	ENST00000488632	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LBR	HGNC	ENSG00000143815	25	0	0	35	8	18.6	-	-	-	C	225610003	G	C	225610003	1	2	144	0	1	0	0	0	0	0	0	0	8706	957	33	2		2	LBR	1	225610003	RNA	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	21493993	225610003	23640618	10	8360										
URB2	0	genome.wustl.edu	37	chr1	229781694	229781694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tctgttgtggcgtgcgtgtcCccagatagtcacagctttaa	11	10	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	229781694	229781694	C	T	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.3884	p.P1295L	0.999	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	107	0	0	97	29	23.02	-	-	-	T	229781694	C	T	229781694	3	4	144	1	0	0	0	0	1	0	0	0	17122	623	22	4	3902	4	URB2	1	229781694	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	4171691	229781694	19468927	11	8361										
ARID4B	0	genome.wustl.edu	37	chr1	235345440	235345440	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ttttttaggccactgtccctGaatacttgaccagacatctt	6	11	1	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	235345440	235345440	G	C	SNP	ARID4B	ENST00000474953	human	ensembl	69_37n	-1	known	nonsense	c.734	p.S245*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARID4B	HGNC	ENSG00000054267	45	0	0	120	14	10.45	-	-	-	C	235345440	G	C	235345440	4	2	144	1	0	0	0	0	0	1	0	0	922	1299	45	2	1164	2	ARID4B	1	235345440	Nonsense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	5563746	235345440	13905181	12	8362										
OR2G3	0	genome.wustl.edu	37	chr1	247769547	247769547	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	atctccatctcctatggcttCataactcaagctgtgctgag	7	12	4	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	1	247769547	247769547	C	T	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	silent	c.660	p.F220	0.672	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	134	0	0	177	35	16.51	-	-	-	T	247769547	C	T	247769547	2	4	144	1	0	0	0	0	0	0	0	1	11072	825	29	2		2	OR2G3	1	247769547	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	12424107	247769547	1481074	13	8363										
ALK	0	genome.wustl.edu	37	chr2	29462567	29462567	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ctggggcaggcgtcctctccCtgctgcccaaccaggatgta	12	15	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	29462567	29462567	C	G	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.2334	p.Q778H	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	69	0	0	49	10	16.95	-	-	-	G	29462567	C	G	29462567	3	3	144	1	0	0	0	0	1	0	0	0	525	680	24	4	2596	4	ALK	2	29462567	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		29462567	213736806	14	8364										
THADA	0	genome.wustl.edu	37	chr2	43793725	43793725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aagaattataaggtaagaatGaaacctcaaagaaaggcaac	8	5	1	4			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	43793725	43793725	G	A	SNP	THADA	ENST00000403856	human	ensembl	69_37n	-1	putative	missense	c.2423	p.S808L	0.009	NULL	superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	44	0	0	71	9	11.25	-	-	-	A	43793725	G	A	43793725	3	1	144	1	0	0	0	0	1	0	0	0	15935	1305	45	2		2	THADA	2	43793725	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	14331158	43793725	199405648	15	8365										
ADD2	0	genome.wustl.edu	37	chr2	70905837	70905837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtcctgggctcccccttaccGtggtcttgggtcgggggctg	16	13	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	70905837	70905837	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.1382	p.T461M	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	124	0	0	121	44	26.51	-	-	-	A	70905837	G	A	70905837	3	1	144	1	0	0	0	0	1	0	0	0	305	1159	40	1	999	1	ADD2	2	70905837	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	27112112	70905837	172293536	16	8366										
IL1RL1	0	genome.wustl.edu	37	chr2	102954653	102954653	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgtgtggtgaccttcactgtCgtatgccagtgactcatctg	11	10	3	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	2	102954653	102954653	C	T	SNP	IL1RL1	ENST00000473175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	IL1RL1	HGNC	ENSG00000115602	26	0	0	36	4	10	-	-	-	T	102954653	C	T	102954653	1	4	144	0	1	0	0	0	0	0	0	0	7717	899	31	1		1	IL1RL1	2	102954653	RNA	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	32048816	102954653	140244720	17	8367										
UBXN4	0	genome.wustl.edu	37	chr2	136513204	136513204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtgaaaactctcagtccagaAatgcagagctttgtgagata	10	7	1	4			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	136513204	136513204	A	C	SNP	UBXN4	ENST00000272638	human	ensembl	69_37n	1	known	missense	c.451	p.N151H	0.010	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224	38	0	0	64	13	16.88	-	-	-	C	136513204	A	C	136513204	3	2	144	1	0	0	0	0	1	0	0	0	17013	14	1	5	469	5	UBXN4	2	136513204	Missense_Mutation	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09	33558551	136513204	106686169	18	8368										
RBM43	0	genome.wustl.edu	37	chr2	152107795	152107795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtgctttcataagatccacaCttgtgtttcaggtaaagaaa	8	7	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	152107795	152107795	C	A	SNP	RBM43	ENST00000331426	human	ensembl	69_37n	-1	known	missense	c.699	p.K233N	0.000	NULL	pfscan_RRM_dom	-	no_errors	RBM43	HGNC	ENSG00000184898	67	0	0	86	20	18.87	-	-	-	A	152107795	C	A	152107795	3	1	144	1	0	0	0	0	1	0	0	0	13220	564	20	4	378	4	RBM43	2	152107795	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	15594591	152107795	91091578	19	8369										
COBLL1	0	genome.wustl.edu	37	chr2	165550995	165550995	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gcaccaaaagttttcaaagtCttcagattttgtgtggatac	8	7	3	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	165550995	165550995	C	G	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.3222	p.K1074N	1.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	26	0	0	47	16	25.4	-	-	-	G	165550995	C	G	165550995	3	3	144	1	0	0	0	0	1	0	0	0	3684	912	32	2	491	2	COBLL1	2	165550995	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	13443200	165550995	77648378	20	8370										
HJURP	0	genome.wustl.edu	37	chr2	234750144	234750144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aatctccctctgacggttctCtccatggccctgtcgtattg	8	14	3	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	2	234750144	234750144	C	G	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.1282	p.E428Q	0.000	pfam_HJURP_C	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	79	0	0	111	36	24.49	-	-	-	G	234750144	C	G	234750144	3	3	144	1	0	0	0	0	1	0	0	0	7240	922	32	2	972	2	HJURP	2	234750144	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	69199149	234750144	8449229	21	8371										
LMCD1	0	genome.wustl.edu	37	chr3	8556671	8556671	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aatactggagattggtgcatTtcgaccgcatgtaagttttc	10	7	0	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	3	8556671	8556671	T	G	SNP	LMCD1	ENST00000415597	human	ensembl	69_37n	1	novel	missense	c.50	p.F17C	0.001	NULL	pfam_PET_domain	-	no_stop_codon:bad_bp_length_for_coding_region	LMCD1	HGNC	ENSG00000071282	39	0	0	62	7	10.14	-	-	-	G	8556671	T	G	8556671	3	3	144	1	0	0	0	0	1	0	0	0	8900	1856	64	5		5	LMCD1	3	8556671	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09		8556671	189465759	22	8372										
NFKBIZ	0	genome.wustl.edu	37	chr3	101572246	101572246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ctgtaccagtattctccacaGaaccagcatgtagagcagca	8	12	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	3	101572246	101572246	G	C	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	missense	c.876	p.Q292H	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	56	0	0	68	17	20	-	-	-	C	101572246	G	C	101572246	3	2	144	1	0	0	0	0	1	0	0	0	10455	933	33	2	894	2	NFKBIZ	3	101572246	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	93015575	101572246	96450184	23	8373										
BCHE	0	genome.wustl.edu	37	chr3	165547581	165547581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	caacatcacccaaggcctcaCggtagttttcaggtctctga	8	13	4	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	3	165547581	165547581	C	T	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	missense	c.1241	p.R414H	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	22	0	0	55	13	19.12	-	-	-	T	165547581	C	T	165547581	3	4	144	1	0	0	0	0	1	0	0	0	1362	536	19	1	579	1	BCHE	3	165547581	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	63975335	165547581	32474849	24	8374										
MUC20	0	genome.wustl.edu	37	chr3	195453258	195453258	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gacaccgaccatggacatcgCaaccaaggggcccttcccca	9	17	0	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	3	195453258	195453258	C	A	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.1784	p.A595E	0.001	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	38	0	0	82	15	15.46	-	-	-	A	195453258	C	A	195453258	3	1	144	1	0	0	0	0	1	0	0	0	10048	710	25	4	1281	4	MUC20	3	195453258	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	29905677	195453258	2569172	25	8375										
SLC30A9	0	genome.wustl.edu	37	chr4	42080253	42080253	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ttcaagaagtgaaaactcctGaagaactagagacctttatg	8	7	1	5			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	4	42080253	42080253	G	A	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	missense	c.1573	p.E525K	1.000	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	42	0	0	60	14	18.92	-	-	-	A	42080253	G	A	42080253	3	1	144	1	0	0	0	0	1	0	0	0	14651	1291	45	2	1639	2	SLC30A9	4	42080253	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		42080253	149074023	26	8376										
C4orf26	0	genome.wustl.edu	37	chr4	76481299	76481299	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gctcagtagaagccatggctCgcagacactgcttctcctac	9	14	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	4	76481299	76481299	C	G	SNP	C4orf26	ENST00000311623	human	ensembl	69_37n	1	known	missense	c.7	p.R3G	0.000	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792	104	0	0	152	30	16.39	-	-	-	G	76481299	C	G	76481299	3	3	144	1	0	0	0	0	1	0	0	0	2278	884	31	3	9	3	C4orf26	4	76481299	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	34401046	76481299	114672977	27	8377										
CCDC158	0	genome.wustl.edu	37	chr4	77317569	77317569	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aaaaaaggaacctgtgtcaaAgtcccagctgaagatgtgtt	10	7	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	4	77317569	77317569	A	T	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	silent	c.141	p.T47	0.994	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	59	0	0	71	13	15.48	-	-	-	T	77317569	A	T	77317569	2	4	144	1	0	0	0	0	0	0	0	1	2816	59	3	5		5	CCDC158	4	77317569	Silent	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09	836270	77317569	113836707	28	8378										
SORBS2	0	genome.wustl.edu	37	chr4	186545551	186545551	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tcccgagggacatccaagtgCtgtctgtaagtgctacagta	11	10	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	4	186545551	186545551	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	silent	c.1020	p.Q340	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	41	0	0	53	18	25.35	-	-	-	T	186545551	C	T	186545551	2	4	144	1	0	0	0	0	0	0	0	1	15017	796	28	4		4	SORBS2	4	186545551	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	109227982	186545551	4608725	29	8379										
SLIT3	0	genome.wustl.edu	37	chr5	168181006	168181006	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tccttgatcttattgttactCagatttctagaaggaagaaa	7	6	3	4			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	5	168181006	168181006	C	G	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	silent	c.1692	p.L564	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	35	0	0	56	10	15.15	-	-	-	G	168181006	C	G	168181006	2	3	144	1	0	0	0	0	0	0	0	1	14830	813	29	2		2	SLIT3	5	168181006	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		168181006	12734254	30	8380										
KIF13A	0	genome.wustl.edu	37	chr6	17773763	17773763	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	agttccataacatgctacatCttggtaactggagctatagt	8	8	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	6	17773763	17773763	C	G	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.4270	p.D1424H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	72	0	0	102	16	13.56	-	-	-	G	17773763	C	G	17773763	3	3	144	1	0	0	0	0	1	0	0	0	8326	913	32	2	1188	2	KIF13A	6	17773763	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		17773763	153341304	31	8381										
ZNF192	0	genome.wustl.edu	37	chr6	28121251	28121251	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aggcctgattctgcaccagaGaatccacactggggagaagc	12	11	1	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	6	28121251	28121251	G	A	SNP	ZNF192	ENST00000330236	human	ensembl	69_37n	1	known	missense	c.1193	p.R398K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF192	HGNC	ENSG00000198315	50	0	0	49	7	12.5	-	-	-	A	28121251	G	A	28121251	3	1	144	1	0	0	0	0	1	0	0	0	17852	942	33	2	1211	2	ZNF192	6	28121251	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	10347488	28121251	142993816	32	8382										
POLM	0	genome.wustl.edu	37	chr7	44121874	44121874	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aggcgtcaaggacgcggaagCctttggagcgcgccaggcct	16	12	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	44121874	44121874	C	G	SNP	POLM	ENST00000242248	human	ensembl	69_37n	-1	known	missense	c.164	p.G55A	1.000	superfamily_BRCT_dom,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678	19	0	0	11	5	31.25	-	-	-	G	44121874	C	G	44121874	3	3	144	1	0	0	0	0	1	0	0	0	12280	739	26	4	1364	4	POLM	7	44121874	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		44121874	115016789	33	8383										
C7orf57	0	genome.wustl.edu	37	chr7	48094195	48094195	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgtactttttattacagagtCttctcaaagtgagtacttat	6	6	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	48094195	48094195	C	A	SNP	C7orf57	ENST00000348904	human	ensembl	69_37n	1	known	missense	c.833	p.S278Y	0.994	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746	54	0	0	49	13	20.97	-	-	-	A	48094195	C	A	48094195	3	1	144	1	0	0	0	0	1	0	0	0	2427	913	32	2	859	2	C7orf57	7	48094195	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	3972321	48094195	111044468	34	8384										
HEPACAM2	0	genome.wustl.edu	37	chr7	92818293	92818293	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gatatttcatacaaaacttaTgaggaaacccctgtcacttt	5	9	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	7	92818293	92818293	T	C	SNP	HEPACAM2	ENST00000492616	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	37	0	0	32	4	11.11	-	-	-	C	92818293	T	C	92818293	1	2	144	0	1	0	0	0	0	0	0	0	7104	1479	51	5		5	HEPACAM2	7	92818293	RNA	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	44724098	92818293	66320370	35	8385										
BRI3	0	genome.wustl.edu	37	chr7	97921989	97921989	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gctttacacgtatcctttgaGagtctgtacctgattcaaac	7	10	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	97921989	97921989	G	C	SNP	BRI3	ENST00000539286	human	ensembl	69_37n	1	known	missense	c.284	p.R95T	0.000	NULL	pfam_Brain_I3	-	no_errors	BRI3	HGNC	ENSG00000164713	53	0	0	63	14	18.18	-	-	-	C	97921989	G	C	97921989	3	2	144	1	0	0	0	0	1	0	0	0	1520	942	33	2	431	2	BRI3	7	97921989	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	5103696	97921989	61216674	36	8386										
PIK3CG	0	genome.wustl.edu	37	chr7	106509637	106509637	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cccggaaggggaccgggttcGagcagaaatgcccaaccagc	14	13	0	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	106509637	106509637	G	C	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	missense	c.1631	p.R544P	0.999	superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	29	0	0	31	7	18.42	-	-	-	C	106509637	G	C	106509637	3	2	144	1	0	0	0	0	1	0	0	0	11990	1058	37	3	1633	3	PIK3CG	7	106509637	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	8587648	106509637	52629026	37	8387										
NDUFB2	0	genome.wustl.edu	37	chr7	140397150	140397150	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	atgctgaaaaatcactctggCtgcagggagtggaggctgtc	14	8	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	140397150	140397150	C	G	SNP	NDUFB2	ENST00000471136	human	ensembl	69_37n	1	putative	silent	c.21	p.G7	0.000	NULL	NULL	-	no_errors	NDUFB2	HGNC	ENSG00000090266	114	0	0	173	23	11.73	-	-	-	G	140397150	C	G	140397150	2	3	144	1	0	0	0	0	0	0	0	1	10353	812	28	4		4	NDUFB2	7	140397150	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	33887513	140397150	18741513	38	8388										
C7orf33	0	genome.wustl.edu	37	chr7	148311310	148311310	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tcctcagatccagttgtcggCaccttgtcttccagttacct	7	14	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	7	148311310	148311310	C	A	SNP	C7orf33	ENST00000307003	human	ensembl	69_37n	1	known	silent	c.381	p.G127	0.001	NULL	NULL	-	no_errors	C7orf33	HGNC	ENSG00000170279	47	0	0	95	11	10.38	-	-	-	A	148311310	C	A	148311310	2	1	144	1	0	0	0	0	0	0	0	1	2411	697	25	4		4	C7orf33	7	148311310	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	7914160	148311310	10827353	39	8389										
GOLGA7	0	genome.wustl.edu	37	chr8	41367608	41367608	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cccagatttcaaagaattacTggttttaccatgactcaaat	5	9	2	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	8	41367608	41367608	T	C	SNP	GOLGA7	ENST00000521417	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	GOLGA7	HGNC	ENSG00000147533	36	0	0	30	5	14.29	-	-	-	C	41367608	T	C	41367608	1	2	144	0	1	0	0	0	0	0	0	0	6611	1595	55	5		5	GOLGA7	8	41367608	RNA	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09		41367608	104996414	40	8390										
PREX2	0	genome.wustl.edu	37	chr8	68995526	68995526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ttgctattaatggtgacctaGtttttatgagacctttcaat	7	6	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	8	68995526	68995526	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.1930	p.V644I	1.000	superfamily_PDZ,smart_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	65	0	0	140	18	11.32	-	-	-	A	68995526	G	A	68995526	3	1	144	1	0	0	0	0	1	0	0	0	12558	1029	36	4	2000	4	PREX2	8	68995526	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	27627918	68995526	77368496	41	8391										
PAG1	0	genome.wustl.edu	37	chr8	81897317	81897317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tccaggtgtgcagctgcagcCacctccttgatctctttcac	8	15	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	8	81897317	81897317	C	T	SNP	PAG1	ENST00000220597	human	ensembl	69_37n	-1	known	silent	c.570	p.V190	0.733	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641	57	0	0	145	17	10.37	-	-	-	T	81897317	C	T	81897317	2	4	144	1	0	0	0	0	0	0	0	1	11461	581	21	4		4	PAG1	8	81897317	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	12901791	81897317	64466705	42	8392										
PAG1	0	genome.wustl.edu	37	chr8	81905418	81905418	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gccagacttccccacagggtGatctgcatctgtccgctgcc	10	16	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	8	81905418	81905418	G	T	SNP	PAG1	ENST00000220597	human	ensembl	69_37n	-1	known	silent	c.45	p.I15	0.000	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641	28	0	0	52	12	18.75	-	-	-	T	81905418	G	T	81905418	2	4	144	1	0	0	0	0	0	0	0	1	11461	1280	45	2		2	PAG1	8	81905418	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	8101	81905418	64458604	43	8393										
GARNL3	0	genome.wustl.edu	37	chr9	130005533	130005533	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	agtcccaggtcaacctgtaaGtaagtaaaagaagcatcatc	8	9	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	9	130005533	130005533	G	C	SNP	GARNL3	ENST00000441134	human	ensembl	69_37n	1	known	splice_site	c.147+1	e1+1	1.000	-	-	-	no_errors	GARNL3	HGNC	ENSG00000136895	78	0	0	87	12	12	-	-	-	C	130005533	G	C	130005533	5	2	144	1	0	0	0	0	0	0	1	0	6291	1044	36	4		4	GARNL3	9	130005533	Splice_Site	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		130005533	11207898	44	8394										
AKR1C1	0	genome.wustl.edu	37	chr10	5010526	5010526	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgaggaagtgatcccaaaagAtgaaaatggaaaaatactat	9	4	0	4			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	10	5010526	5010526	A	T	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	1	known	missense	c.395	p.D132V	0.929	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	30	0	0	38	5	11.36	-	-	-	T	5010526	A	T	5010526	3	4	144	1	0	0	0	0	1	0	0	0	469	333	12	5	409	5	AKR1C1	10	5010526	Missense_Mutation	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09		5010526	130524221	45	8395										
ARMC3	0	genome.wustl.edu	37	chr10	23321928	23321928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	catgtcaaaaaaggaatcttCtaccatcgagctttgctttt	6	9	3	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	10	23321928	23321928	C	G	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	missense	c.2385	p.F795L	0.997	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	70	0	0	95	25	20.83	-	-	-	G	23321928	C	G	23321928	3	3	144	1	0	0	0	0	1	0	0	0	956	912	32	2	2451	2	ARMC3	10	23321928	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	18311402	23321928	112212819	46	8396										
VCL	0	genome.wustl.edu	37	chr10	75874588	75874588	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ccaaccataagcacccagctCaaaatcctgtccacagtgaa	5	15	1	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	10	75874588	75874588	C	G	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	silent	c.3189	p.L1063	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	46	0	0	46	11	19.3	-	-	-	G	75874588	C	G	75874588	2	3	144	1	0	0	0	0	0	0	0	1	17236	813	29	2		2	VCL	10	75874588	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	52552660	75874588	59660159	47	8397										
MORN4	0	genome.wustl.edu	37	chr10	99379309	99379309	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgtcctccagcaaatgaagtGttcatcatggatactcccca	7	12	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	10	99379309	99379309	G	C	SNP	MORN4	ENST00000370635	human	ensembl	69_37n	-1	novel	missense	c.102	p.N34K	0.001	NULL	NULL	-	no_errors	MORN4	HGNC	ENSG00000171160	34	0	0	48	25	34.25	-	-	-	C	99379309	G	C	99379309	3	2	144	1	0	0	0	0	1	0	0	0	9782	1392	48	4		4	MORN4	10	99379309	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	23504721	99379309	36155438	48	8398										
FAM45A	0	genome.wustl.edu	37	chr10	120896927	120896927	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cccattgaatataaaagtgtGtaggactgaaacagtgacct	9	7	0	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	10	120896927	120896927	G	A	SNP	FAM45A	ENST00000489988	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM45A	HGNC	ENSG00000119979	34	0	0	30	6	16.67	-	-	-	A	120896927	G	A	120896927	1	1	144	0	1	0	0	0	0	0	0	0	5610	1392	48	4		4	FAM45A	10	120896927	RNA	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	21517618	120896927	14637820	49	8399										
TACC2	0	genome.wustl.edu	37	chr10	124008183	124008183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gaacagagagagaagtcagtCtcccaccagacggtgcagca	12	11	2	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	10	124008183	124008183	C	G	SNP	TACC2	ENST00000490979	human	ensembl	69_37n	1	putative	missense	c.149	p.S50C	0.986	pfam_TACC	pfam_TACC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TACC2	HGNC	ENSG00000138162	71	0	0	79	26	24.76	-	-	-	G	124008183	C	G	124008183	3	3	144	1	0	0	0	0	1	0	0	0	15594	900	32	2	8564	2	TACC2	10	124008183	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	3111256	124008183	11526564	50	8400										
HPX	0	genome.wustl.edu	37	chr11	6452495	6452495	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tggggttgcggaagggccttGgctgcattcagtttctccac	14	10	2	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	11	6452495	6452495	G	C	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	silent	c.1335	p.A445	0.784	superfamily_Hemopexin/matrixin,pirsf_Hemopexin_chordata	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	63	0	0	53	19	26.39	-	-	-	C	6452495	G	C	6452495	2	2	144	1	0	0	0	0	0	0	0	1	7397	1335	47	4		4	HPX	11	6452495	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		6452495	128554021	51	8401										
MRGPRX2	0	genome.wustl.edu	37	chr11	19077008	19077008	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtgccctgacggaagcatccTtcactgtgatccacctcagc	9	15	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	11	19077008	19077008	T	C	SNP	MRGPRX2	ENST00000329773	human	ensembl	69_37n	-1	known	silent	c.942	p.E314	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695	47	0	0	64	18	21.43	-	-	-	C	19077008	T	C	19077008	2	2	144	1	0	0	0	0	0	0	0	1	9839	1606	56	5		5	MRGPRX2	11	19077008	Silent	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	12624513	19077008	115929508	52	8402										
XRRA1	0	genome.wustl.edu	37	chr11	74556118	74556118	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	aaggatatgccctcacatacCctttggctcaatgaaggctg	9	11	2	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	11	74556118	74556118	C	A	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	nonsense	c.1903	p.G635*	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	152	0	0	182	47	20.52	-	-	-	A	74556118	C	A	74556118	4	1	144	1	0	0	0	0	0	1	0	0	17558	637	22	4	491	4	XRRA1	11	74556118	Nonsense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	55479110	74556118	60450398	53	8403										
HOXC13	0	genome.wustl.edu	37	chr12	54333415	54333415	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtccgcccacctctggaagtCtcccttcccaggtaaggaag	10	15	2	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	12	54333415	54333415	C	A	SNP	HOXC13	ENST00000243056	human	ensembl	69_37n	1	known	missense	c.725	p.S242Y	1.000	NULL	pfam_Homeodomain,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXC13	HGNC	ENSG00000123364	19	0	0	30	6	16.67	-	-	-	A	54333415	C	A	54333415	3	1	144	1	0	0	0	0	1	0	0	0	7363	913	32	2	727	2	HOXC13	12	54333415	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		54333415	79518480	54	8404										
UBE3B	0	genome.wustl.edu	37	chr12	109935652	109935652	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgctgcacagttctcagacaAtctgattcggccgttcctca	8	13	3	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	12	109935652	109935652	A	G	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.743	p.N248S	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	76	0	0	88	26	22.81	-	-	-	G	109935652	A	G	109935652	3	3	144	1	0	0	0	0	1	0	0	0	16977	101	4	5	773	5	UBE3B	12	109935652	Missense_Mutation	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09	55602237	109935652	23916243	55	8405										
IFT81	0	genome.wustl.edu	37	chr12	110566802	110566802	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tggaagtaaacctgtaatttAcccagtgctccactggcttc	8	11	0	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	12	110566802	110566802	A	G	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.296	p.Y99C	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	36	0	0	73	11	13.1	-	-	-	G	110566802	A	G	110566802	3	3	144	1	0	0	0	0	1	0	0	0	7619	391	14	5	306	5	IFT81	12	110566802	Missense_Mutation	SNP	A	TCGA-A7-A4SA-01A-11D-A25Q-09	631150	110566802	23285093	56	8406										
ERP29	0	genome.wustl.edu	37	chr12	112460145	112460145	+	Frame_Shift_Del	DEL	C	C	-													0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	taggtatgcctggttgcctgCctgtatacgacgccctggcc							TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	12	112460145	112460145	C	-	DEL	ERP29	ENST00000261735	human	ensembl	69_37n	1	known	frame_shift_del	c.475	p.P159fs	0.971	pfam_ER_p29_C,superfamily_ER_p29_C,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248	57	0	0	70	15	17.24	-	-	-	-	112460145	C	-	112460145	7	5	144	1	0	1	0	1	0	0	0	0	5279	739	26	0	485	0	ERP29	12	112460145	Frame_Shift_Del	DEL	C	TCGA-A7-A4SA-01A-11D-A25Q-09	1893343	112460145	21391750	57	8407										
TMTC4	0	genome.wustl.edu	37	chr13	101288907	101288907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cttaatgagggggatgcagcCcattgaccaatcaaaacaca	9	10	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	13	101288907	101288907	C	T	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.1081	p.G361S	1.000	pfam_DUF1736	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	54	0	0	47	21	30.88	-	-	-	T	101288907	C	T	101288907	3	4	144	1	0	0	0	0	1	0	0	0	16358	623	22	4	1241	4	TMTC4	13	101288907	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		101288907	13880971	58	8408										
OTUD7A	0	genome.wustl.edu	37	chr15	31819475	31819475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tcatggtatagagagctttcCgtaacaccaggtcccggtcg	11	11	1	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	15	31819475	31819475	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.689	p.R230Q	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	77	0	0	96	23	19.17	-	-	-	T	31819475	C	T	31819475	3	4	144	1	0	0	0	0	1	0	0	0	11391	652	23	1	2119	1	OTUD7A	15	31819475	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09		31819475	70711917	59	8409										
GOLGA6B	0	genome.wustl.edu	37	chr15	72955060	72955060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tctcccagaaccacaagctcGacaagcagctggccgagcca	9	16	1	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-11A-44D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	53c7f39c-b4c7-48b6-8e7d-674f3dbb7811	15	72955060	72955060	G	A	SNP	GOLGA6B	ENST00000421285	human	ensembl	69_37n	1	known	missense	c.1315	p.D439N	0.995	NULL	NULL	-	no_errors	GOLGA6B	HGNC	ENSG00000215186	120	1	0.83	84	13	13.4	-	-	-	A	72955060	G	A	72955060	3	1	144	1	0	0	0	0	1	0	0	0	6610	1058	37	1	1357	1	GOLGA6B	15	72955060	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	41135585	72955060	29576332	60	8410										
IL32	0	genome.wustl.edu	37	chr16	3131810	3131810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cagacctggtggcacggggtTctggcctgggtgaaggagaa	18	8	1	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	16	3131810	3131810	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	1	putative	silent	c.516	p.V172	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	24	0	0	22	10	31.25	-	-	-	C	3131810	T	C	3131810	2	2	144	1	0	0	0	0	0	0	0	1	7746	1798	62	5		5	IL32	16	3131810	Silent	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09		3131810	87222943	61	8411										
ATP2A1	0	genome.wustl.edu	37	chr16	28895954	28895954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	atcaaatccaccacgctgcgGgttgaccagtccatcctgac	8	15	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	16	28895954	28895954	G	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	silent	c.522	p.R174	0.966	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	58	0	0	89	16	15.24	-	-	-	T	28895954	G	T	28895954	2	4	144	1	0	0	0	0	0	0	0	1	1140	1219	43	4		4	ATP2A1	16	28895954	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	25764144	28895954	61458799	62	8412										
TP53	0	genome.wustl.edu	37	chr17	7578479	7578479	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gacgcgggtgccgggcggggGtgtggaatcaacccacagct	18	11	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	17	7578479	7578479	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.451	p.P151A	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	38	0	0	37	18	32.73	-	-	-	C	7578479	G	C	7578479	3	2	144	1	0	0	0	0	1	0	0	0	16477	1261	44	4	847	4	TP53	17	7578479	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		7578479	73616731	63	8413										
GIT1	0	genome.wustl.edu	37	chr17	27902412	27902412	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gctgggaagcccaggatctaGgtctccatccaggctttcca	11	13	2	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	17	27902412	27902412	G	T	SNP	GIT1	ENST00000394869	human	ensembl	69_37n	-1	known	missense	c.1930	p.L644I	0.997	pfam_GIT1_C	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262	40	0	0	54	17	23.94	-	-	-	T	27902412	G	T	27902412	3	4	144	1	0	0	0	0	1	0	0	0	6448	991	35	4	394	4	GIT1	17	27902412	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	20323933	27902412	53292798	64	8414										
PSMD12	0	genome.wustl.edu	37	chr17	65337029	65337029	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tgttaaccagagacattaatGagttcagtttctgagaccag	9	7	2	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	17	65337029	65337029	G	C	SNP	PSMD12	ENST00000356126	human	ensembl	69_37n	-1	known	nonsense	c.1301	p.S434*	1.000	smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170	67	0	0	113	22	16.3	-	-	-	C	65337029	G	C	65337029	4	2	144	1	0	0	0	0	0	1	0	0	12775	1294	45	2	73	2	PSMD12	17	65337029	Nonsense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	37434617	65337029	15858181	65	8415										
LDLR	0	genome.wustl.edu	37	chr19	11241989	11241989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	agtctggaggatgacgtggcGtgaacatctgcctggagtcc	15	9	2	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	19	11241989	11241989	G	A	SNP	LDLR	ENST00000557933	human	ensembl	69_37n	1	novel	missense	c.2642	p.R881H	0.180	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164	51	0	0	72	22	23.4	-	-	-	A	11241989	G	A	11241989	3	1	144	1	0	0	0	0	1	0	0	0	8758	1132	40	1	2650	1	LDLR	19	11241989	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		11241989	47886994	66	8416										
PRDX2	0	genome.wustl.edu	37	chr19	12907948	12907948	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	atccacgttgggcttaatcgTgtcactgccaggcttccagc	10	13	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	19	12907948	12907948	T	A	SNP	PRDX2	ENST00000301522	human	ensembl	69_37n	-1	known	missense	c.544	p.T182S	1.000	pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX2	HGNC	ENSG00000167815	74	0	0	92	11	10.58	-	-	-	A	12907948	T	A	12907948	3	1	144	1	0	0	0	0	1	0	0	0	12546	1696	59	5	56	5	PRDX2	19	12907948	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	1665959	12907948	46221035	67	8417										
DNASE2	0	genome.wustl.edu	37	chr19	12987168	12987168	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gggctgctgccaaccagccgGagtacaggtctgcaaaggat	14	11	1	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	19	12987168	12987168	G	C	SNP	DNASE2	ENST00000222219	human	ensembl	69_37n	-1	known	missense	c.719	p.S240C	0.468	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612	40	0	0	80	10	11.11	-	-	-	C	12987168	G	C	12987168	3	2	144	1	0	0	0	0	1	0	0	0	4699	1174	41	2	367	2	DNASE2	19	12987168	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	79220	12987168	46141815	68	8418										
LTBP4	0	genome.wustl.edu	37	chr19	41123062	41123062	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cccacgccgtgtgccagaacCtgcccggctccttccagtgc	10	19	0	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	19	41123062	41123062	C	T	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	silent	c.3202	p.L1068	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	165	0	0	136	38	21.84	-	-	-	T	41123062	C	T	41123062	2	4	144	1	0	0	0	0	0	0	0	1	9142	680	24	4		4	LTBP4	19	41123062	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	28135894	41123062	18005921	69	8419										
ZNF880	0	genome.wustl.edu	37	chr19	52888048	52888048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	catagaatgcacacgggagaGcaaccttacaaatgtaatga	9	8	0	3			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	19	52888048	52888048	G	A	SNP	ZNF880	ENST00000422689	human	ensembl	69_37n	1	known	silent	c.1215	p.E405	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	26	0	0	46	6	11.54	-	-	-	A	52888048	G	A	52888048	2	1	144	1	0	0	0	0	0	0	0	1	18290	962	34	4		4	ZNF880	19	52888048	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	11764986	52888048	6240935	70	8420										
TMC2	0	genome.wustl.edu	37	chr20	2591085	2591085	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gtagagatcgtgatgtccctGcttggaatgttttgtccccc	11	10	0	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	20	2591085	2591085	G	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	silent	c.1434	p.L478	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	99	0	0	181	28	13.4	-	-	-	A	2591085	G	A	2591085	2	1	144	1	0	0	0	0	0	0	0	1	16080	1306	46	4		4	TMC2	20	2591085	Silent	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		2591085	60434435	71	8421										
SLC4A11	0	genome.wustl.edu	37	chr20	3215479	3215479	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gagttggcagtgtcgaaggcCtcatcccccaggatctcctc	11	14	2	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	20	3215479	3215479	C	G	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.279	p.E93D	0.512	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	50	0	0	53	6	10	-	-	-	G	3215479	C	G	3215479	3	3	144	1	0	0	0	0	1	0	0	0	14741	680	24	4	2549	4	SLC4A11	20	3215479	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	624394	3215479	59810041	72	8422										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31980029	31980029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ctgatgtaaacggttccagaTggtctgctcagccttctccc	9	13	3	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	20	31980029	31980029	T	C	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.463	p.I155V	1.000	pfam_Methylthiotransferase_N,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	72	0	0	133	26	16.35	-	-	-	C	31980029	T	C	31980029	3	2	144	1	0	0	0	0	1	0	0	0	3174	1464	51	5	1340	5	CDK5RAP1	20	31980029	Missense_Mutation	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09	28764550	31980029	31045491	73	8423										
SLA2	0	genome.wustl.edu	37	chr20	35262008	35262008	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	tctctgcctgagacttcagaCagcaccgtccaccagtctcc	7	17	3	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	20	35262008	35262008	C	G	SNP	SLA2	ENST00000262866	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	0.944	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	28	0	0	44	7	13.46	-	-	-	G	35262008	C	G	35262008	2	3	144	1	0	0	0	0	0	0	0	1	14453	465	17	4		4	SLA2	20	35262008	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	3281979	35262008	27763512	74	8424										
PCK1	0	genome.wustl.edu	37	chr20	56136552	56136552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gcctaccccaggcagtgaggGagtttctcgagaataacgct	12	11	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	20	56136552	56136552	G	A	SNP	PCK1	ENST00000319441	human	ensembl	69_37n	1	known	missense	c.85	p.E29K	0.998	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253	27	0	0	72	9	11.11	-	-	-	A	56136552	G	A	56136552	3	1	144	1	0	0	0	0	1	0	0	0	11654	1175	41	2	87	2	PCK1	20	56136552	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09	20874544	56136552	6888968	75	8425										
KRTAP19-6	0	genome.wustl.edu	37	chr21	31914008	31914008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	agagaatccatatccttcacGgcatgatgggcggcagcagc	12	11	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	21	31914008	31914008	G	A	SNP	KRTAP19-6	ENST00000334046	human	ensembl	69_37n	-1	known	missense	c.145	p.R49C	0.000	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-6	HGNC	ENSG00000186925	77	0	0	106	26	19.55	-	-	-	A	31914008	G	A	31914008	3	1	144	1	0	0	0	0	1	0	0	0	8586	1116	39	1	35	1	KRTAP19-6	21	31914008	Missense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		31914008	16215887	76	8426										
NPTXR	0	genome.wustl.edu	37	chr22	39222746	39222746	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	catctggaggactgtaggctGaggaccctgagggtgggcaa	17	8	1	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	22	39222746	39222746	G	T	SNP	NPTXR	ENST00000333039	human	ensembl	69_37n	-1	known	nonsense	c.857	p.S286*	0.660	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	30	0	0	30	6	16.22	-	-	-	T	39222746	G	T	39222746	4	4	144	1	0	0	0	0	0	1	0	0	10677	1294	45	2	657	2	NPTXR	22	39222746	Nonsense_Mutation	SNP	G	TCGA-A7-A4SA-01A-11D-A25Q-09		39222746	12081820	77	8427										
EP300	0	genome.wustl.edu	37	chr22	41572386	41572386	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	cgctggcaagggacaagcacCtggagttctcttcactccga	11	13	2	0			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	22	41572386	41572386	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	silent	c.4915	p.L1639	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	62	0	0	82	19	18.81	-	-	-	T	41572386	C	T	41572386	2	4	144	1	0	0	0	0	0	0	0	1	5185	680	24	4		4	EP300	22	41572386	Silent	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	2349640	41572386	9732180	78	8428										
KDM5C	0	genome.wustl.edu	37	chrX	53250992	53250992	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	ctgactgtggtggcaaagaaTgggaggatttggggagggaa	19	3	0	2			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	X	53250992	53250992	T	C	SNP	KDM5C	ENST00000467093	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KDM5C	HGNC	ENSG00000126012	31	0	0	25	14	35.9	-	-	-	C	53250992	T	C	53250992	1	2	144	0	1	0	0	0	0	0	0	0	8188	1479	51	5		5	KDM5C	23	53250992	RNA	SNP	T	TCGA-A7-A4SA-01A-11D-A25Q-09		53250992	102019568	79	8429										
BRWD3	0	genome.wustl.edu	37	chrX	79989644	79989644	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225	18	0.0011792372909834	2.48877551020408	3.51296296296296	1.23181818181818	0.00508887706549192	0.0888736030366268	11	gactctaattcagcaattttCtcaggaacctcagaacccaa	5	12	4	1			TCGA-A7-A4SA-01A-11D-A25Q-09	TCGA-A7-A4SA-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d76ae66f-5c29-4e62-a943-b54b8c2c3dd6	16213e15-1e04-43d3-969a-3c0de008d69e	X	79989644	79989644	C	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.1059	p.E353D	1.000	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	122	0	0	101	29	22.31	-	-	-	G	79989644	C	G	79989644	3	3	144	1	0	0	0	0	1	0	0	0	1534	912	32	2	4473	2	BRWD3	23	79989644	Missense_Mutation	SNP	C	TCGA-A7-A4SA-01A-11D-A25Q-09	26738652	79989644	75280916	80	8430										
PRDM16	0	genome.wustl.edu	37	chr1	3328444	3328444	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	gccctgcccctggtctccgcCgtcagcaacagcagccaggg	12	18	2	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	1	3328444	3328444	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	silent	c.1683	p.A561	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	45	0	0	70	14	16.67	-	-	-	T	3328444	C	T	3328444	2	4	145	1	0	0	0	0	0	0	0	1	12538	639	23	1		1	PRDM16	1	3328444	Silent	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		3328444	245922177	1	8431										
PINK1	0	genome.wustl.edu	37	chr1	20977380	20977380	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	gtcctctgctcacagacatcTgaaaagtgaatggccaagct	9	11	3	3			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	1	20977380	20977380	T	C	SNP	PINK1	ENST00000400490	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PINK1	HGNC	ENSG00000158828	10	0	0	13	7	35	-	-	-	C	20977380	T	C	20977380	1	2	145	0	1	0	0	0	0	0	0	0	12006	1595	55	5		5	PINK1	1	20977380	RNA	SNP	T	TCGA-A7-A4SB-01A-21D-A25Q-09	17648936	20977380	228273241	2	8432										
ARID1A	0	genome.wustl.edu	37	chr1	27057874	27057874	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	agccatcccagcctccacatCagcagtccccggctccatac	6	20	1	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	1	27057874	27057874	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.1582	p.Q528*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	90	0	0	48	44	47.83	-	-	-	T	27057874	C	T	27057874	4	4	145	1	0	0	0	0	0	1	0	0	915	827	29	2	1592	2	ARID1A	1	27057874	Nonsense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09	6080494	27057874	222192747	3	8433										
KCNT2	0	genome.wustl.edu	37	chr1	196342320	196342320	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ataagtgtagatgttgctggGcatatacagtttaaagctaa	10	4	0	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	1	196342320	196342320	G	C	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1353	p.C451W	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	21	0	0	34	18	34.62	-	-	-	C	196342320	G	C	196342320	3	2	145	1	0	0	0	0	1	0	0	0	8146	1195	42	4	2114	4	KCNT2	1	196342320	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	169284446	196342320	52908301	4	8434										
OR2L2	0	genome.wustl.edu	37	chr1	248201808	248201808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ctccaccattgttccaaagaTggtttatgattttctgtatg	7	8	1	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	1	248201808	248201808	T	C	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	missense	c.239	p.M80T	0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	177	0	0	202	83	29.12	-	-	-	C	248201808	T	C	248201808	3	2	145	1	0	0	0	0	1	0	0	0	11080	1464	51	5	241	5	OR2L2	1	248201808	Missense_Mutation	SNP	T	TCGA-A7-A4SB-01A-21D-A25Q-09	51859488	248201808	1048813	5	8435										
SPEG	0	genome.wustl.edu	37	chr2	220312892	220312892	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cccccacgtcgccccaccgtCgcactcaggagcctgtgctg	10	20	1	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	2	220312892	220312892	C	G	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.1012	p.R338G	0.203	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	32	0	0	30	10	25	-	-	-	G	220312892	C	G	220312892	3	3	145	1	0	0	0	0	1	0	0	0	15127	884	31	3	1026	3	SPEG	2	220312892	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		220312892	22886481	6	8436										
TMPRSS7	0	genome.wustl.edu	37	chr3	111757148	111757148	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cctagcagtcatagcctggaCacttctgtggctgtatatca	9	11	3	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	3	111757148	111757148	C	G	SNP	TMPRSS7	ENST00000452346	human	ensembl	69_37n	1	novel	missense	c.278	p.T93R	0.993	NULL	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	27	0	0	21	6	22.22	-	-	-	G	111757148	C	G	111757148	3	3	145	1	0	0	0	0	1	0	0	0	16347	493	17	4		4	TMPRSS7	3	111757148	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		111757148	86265282	7	8437										
PIK3CA	0	genome.wustl.edu	37	chr3	178948136	178948136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	tgattagtaaaggagcccaaGaatgcacaaagacaagagaa	10	6	0	4			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	3	178948136	178948136	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2908	p.E970K	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	30	0	0	26	12	31.58	-	-	-	A	178948136	G	A	178948136	3	1	145	1	0	0	0	0	1	0	0	0	11987	943	33	2	2982	2	PIK3CA	3	178948136	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	67190988	178948136	19074294	8	8438										
FAT4	0	genome.wustl.edu	37	chr4	126237986	126237986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	gttttcccggacccctctatCgtggtcactttcaaggaaga	9	12	3	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	4	126237986	126237986	C	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.420	p.I140M	0.995	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	29	0	0	43	31	41.89	-	-	-	G	126237986	C	G	126237986	3	3	145	1	0	0	0	0	1	0	0	0	5738	874	31	3	422	3	FAT4	4	126237986	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		126237986	64916290	9	8439										
SNX25	0	genome.wustl.edu	37	chr4	186284580	186284580	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	attgaactgtgtcctgagctGagagttcatttagatcaact	9	7	2	4			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	4	186284580	186284580	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	silent	c.2484	p.L828	0.962	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	45	0	0	40	29	42.03	-	-	-	A	186284580	G	A	186284580	2	1	145	1	0	0	0	0	0	0	0	1	14985	1277	45	2		2	SNX25	4	186284580	Silent	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	60046594	186284580	4869696	10	8440										
MAP3K1	0	genome.wustl.edu	37	chr5	56177802	56177802	+	Frame_Shift_Del	DEL	G	G	-													0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	aaattgagtgccagttcagaGgacatttctgagagactggc							TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	5	56177802	56177802	G	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2775	p.D926fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	35	0	0	8	11	57.89	-	-	-	-	56177802	G	-	56177802	7	5	145	1	0	1	0	1	0	0	0	0	9314	991	35	0	2829	0	MAP3K1	5	56177802	Frame_Shift_Del	DEL	G	TCGA-A7-A4SB-01A-21D-A25Q-09		56177802	124737458	11	8441										
PCDHA13	0	genome.wustl.edu	37	chr5	140263790	140263790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ggtggacgcgccgcaccaccGccttctggtgctggtgaagg	16	13	1	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	5	140263790	140263790	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1937	p.R646H	0.025	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	83	0	0	46	86	64.66	-	-	-	A	140263790	G	A	140263790	3	1	145	1	0	0	0	0	1	0	0	0	11596	1087	38	1	1939	1	PCDHA13	5	140263790	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	84085988	140263790	40651470	12	8442										
SLC22A1	0	genome.wustl.edu	37	chr6	160577016	160577016	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ttcctttgaagcggtgttggGcctgcttgccgcgggagtga	16	9	0	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	6	160577016	160577016	G	T	SNP	SLC22A1	ENST00000366963	human	ensembl	69_37n	1	known	missense	c.1508	p.G503V	0.795	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A1	HGNC	ENSG00000175003	82	0	0	64	18	21.69	-	-	-	T	160577016	G	T	160577016	3	4	145	1	0	0	0	0	1	0	0	0	14529	1203	42	4	1546	4	SLC22A1	6	160577016	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09		160577016	10538051	13	8443										
TRPV5	0	genome.wustl.edu	37	chr7	142626581	142626581	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	gtgcctgtggctctggcagaGacactggccctgcgggtgag	17	11	1	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	7	142626581	142626581	G	C	SNP	TRPV5	ENST00000265310	human	ensembl	69_37n	-1	known	silent	c.429	p.V143	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV5_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412	38	0	0	39	21	35	-	-	-	C	142626581	G	C	142626581	2	2	145	1	0	0	0	0	0	0	0	1	16695	929	33	2		2	TRPV5	7	142626581	Silent	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09		142626581	16512082	14	8444										
FBXO16	0	genome.wustl.edu	37	chr8	28286174	28286174	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	tttcagctgtggtggcagtgTctgggagtcccactgactca	13	10	3	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	8	28286174	28286174	T	G	SNP	FBXO16	ENST00000346498	human	ensembl	69_37n	-1	novel	missense	c.887	p.D296A	0.004	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO16	HGNC	ENSG00000214050	26	0	0	28	4	12.5	-	-	-	G	28286174	T	G	28286174	3	3	145	1	0	0	0	0	1	0	0	0	5775	1682	58	5		5	FBXO16	8	28286174	Missense_Mutation	SNP	T	TCGA-A7-A4SB-01A-21D-A25Q-09		28286174	118077848	15	8445										
GLI4	0	genome.wustl.edu	37	chr8	144358399	144358399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	gggccaagccgcacaggtgcGaggcctgcggcaagagtttc	16	12	0	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	8	144358399	144358399	G	A	SNP	GLI4	ENST00000340042	human	ensembl	69_37n	1	known	missense	c.556	p.E186K	0.075	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI4	HGNC	ENSG00000250571	47	0	0	23	17	42.5	-	-	-	A	144358399	G	A	144358399	3	1	145	1	0	0	0	0	1	0	0	0	6492	1059	37	1	566	1	GLI4	8	144358399	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	116072225	144358399	2005623	16	8446										
CNTNAP3	0	genome.wustl.edu	37	chr9	39178266	39178266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ctctgcatggctttaaatttCaaagaaataacgtctcttat	5	8	3	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	9	39178266	39178266	C	G	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.630	p.L210F	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	114	0	0	90	33	26.83	-	-	-	G	39178266	C	G	39178266	3	3	145	1	0	0	0	0	1	0	0	0	3678	825	29	2	3316	2	CNTNAP3	9	39178266	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		39178266	102035165	17	8447										
ODF2	0	genome.wustl.edu	37	chr9	131223278	131223278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	atgtgcggcggagtgtccggGtgaaaaccaaggtaccttgg	16	8	0	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	9	131223278	131223278	G	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.181	p.V61M	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	35	0	0	24	13	35.14	-	-	-	A	131223278	G	A	131223278	3	1	145	1	0	0	0	0	1	0	0	0	10900	1261	44	4	303	4	ODF2	9	131223278	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	92045012	131223278	9990153	18	8448										
JMJD1C	0	genome.wustl.edu	37	chr10	64974188	64974188	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	catttcctgaagaagcatttGtaacacttgattgggttaga	9	6	0	4			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	10	64974188	64974188	G	C	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.1739	p.T580R	0.556	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	25	0	0	19	29	60.42	-	-	-	C	64974188	G	C	64974188	3	2	145	1	0	0	0	0	1	0	0	0	8004	1377	48	4	5959	4	JMJD1C	10	64974188	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09		64974188	70560559	19	8449										
C2CD3	0	genome.wustl.edu	37	chr11	73785550	73785550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ggagtccagctcatgagtggGctcaaggtgtgaggaaagag	17	6	2	3			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	11	73785550	73785550	G	A	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.4699	p.P1567S	0.171	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	67	0	0	1423	181	11.28	-	-	-	A	73785550	G	A	73785550	3	1	145	1	0	0	0	0	1	0	0	0	2174	1203	42	4	1224	4	C2CD3	11	73785550	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09		73785550	61220966	20	8450										
UVRAG	0	genome.wustl.edu	37	chr11	75623074	75623074	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	caattcttacgatgtcttctCtttgctacggtaagaaactt	6	9	3	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	11	75623074	75623074	C	T	SNP	UVRAG	ENST00000356136	human	ensembl	69_37n	1	known	missense	c.584	p.S195F	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	UVRAG	HGNC	ENSG00000198382	42	0	0	19	485	96.23	-	-	-	T	75623074	C	T	75623074	3	4	145	1	0	0	0	0	1	0	0	0	17205	913	32	2	606	2	UVRAG	11	75623074	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09	1837524	75623074	59383442	21	8451										
SIK3	0	genome.wustl.edu	37	chr11	116827720	116827720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cttcataatttgaacttcccGgaaaatcttcttcaagtttt	4	9	4	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	11	116827720	116827720	G	A	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	missense	c.334	p.R112W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	39	0	0	11	6	35.29	-	-	-	A	116827720	G	A	116827720	3	1	145	1	0	0	0	0	1	0	0	0	14408	1115	39	1	3719	1	SIK3	11	116827720	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	41204646	116827720	18178796	22	8452										
DDN	0	genome.wustl.edu	37	chr12	49390678	49390678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	tggcgaactgtttccaacctCgggcagggtcctctcattcc	10	14	1	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	12	49390678	49390678	C	T	SNP	DDN	ENST00000421952	human	ensembl	69_37n	-1	known	missense	c.1981	p.E661K	0.000	NULL	NULL	-	no_errors	DDN	HGNC	ENSG00000181418	42	0	0	52	31	37.35	-	-	-	T	49390678	C	T	49390678	3	4	145	1	0	0	0	0	1	0	0	0	4364	893	31	1	158	1	DDN	12	49390678	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		49390678	84461217	23	8453										
C12orf74	0	genome.wustl.edu	37	chr12	93100574	93100574	+	Frame_Shift_Del	DEL	C	C	-													0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cactttgaggagattaaggaCccgtggctgtgggacaaggc							TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	12	93100574	93100574	C	-	DEL	C12orf74	ENST00000397833	human	ensembl	69_37n	1	known	frame_shift_del	c.167	p.R57fs	0.224	NULL	NULL	-	no_errors	C12orf74	HGNC	ENSG00000214215	25	0	0	33	30	47.62	-	-	-	-	93100574	C	-	93100574	7	5	145	1	0	1	0	1	0	0	0	0	1726	507	18	0	169	0	C12orf74	12	93100574	Frame_Shift_Del	DEL	C	TCGA-A7-A4SB-01A-21D-A25Q-09	43709896	93100574	40751321	24	8454										
TRPM1	0	genome.wustl.edu	37	chr15	31332453	31332453	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ttgaggcaggtcgagttgctCcagtttttcagctcgtaggt	13	8	1	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	15	31332453	31332453	C	A	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.2235	p.W745C	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	64	0	0	60	15	20	-	-	-	A	31332453	C	A	31332453	3	1	145	1	0	0	0	0	1	0	0	0	16681	856	30	2	2737	2	TRPM1	15	31332453	Missense_Mutation	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		31332453	71198939	25	8455										
TYRO3	0	genome.wustl.edu	37	chr15	41865525	41865525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ggctggcagaggacatgacaGtgtgtgtggctgacttcgga	17	7	0	3			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	15	41865525	41865525	G	T	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	1	known	missense	c.2005	p.V669L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	35	0	0	59	8	11.94	-	-	-	T	41865525	G	T	41865525	3	4	145	1	0	0	0	0	1	0	0	0	16911	1029	36	4	2071	4	TYRO3	15	41865525	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	10533072	41865525	60665867	26	8456										
CEP152	0	genome.wustl.edu	37	chr15	49048645	49048645	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	taactcaagttccttctgaaGagaatgaatcttctcttcca	5	10	4	3			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	15	49048645	49048645	G	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.2800	p.L934F	0.999	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	41	0	0	26	19	42.22	-	-	-	A	49048645	G	A	49048645	3	1	145	1	0	0	0	0	1	0	0	0	3277	942	33	2	2192	2	CEP152	15	49048645	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	7183120	49048645	53482747	27	8457										
MFGE8	0	genome.wustl.edu	37	chr15	89444793	89444793	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ctgacccacctgcagccactGatcgttaccgtagctccccg	8	18	0	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	15	89444793	89444793	G	A	SNP	MFGE8	ENST00000268150	human	ensembl	69_37n	-1	known	nonsense	c.859	p.Q287*	0.973	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545	57	0	0	50	36	41.86	-	-	-	A	89444793	G	A	89444793	4	1	145	1	0	0	0	0	0	1	0	0	9591	1299	45	2	316	2	MFGE8	15	89444793	Nonsense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	40396148	89444793	13086599	28	8458										
RBL2	0	genome.wustl.edu	37	chr16	53524699	53524699	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	attcctgacaaaggagagcaCacccaggtttggaggtccta	11	10	0	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	16	53524699	53524699	C	G	SNP	RBL2	ENST00000379935	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RBL2	HGNC	ENSG00000103479	32	0	0	14	21	60	-	-	-	G	53524699	C	G	53524699	1	3	145	0	1	0	0	0	0	0	0	0	13193	493	17	4		4	RBL2	16	53524699	RNA	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		53524699	36830054	29	8459										
CDH1	0	genome.wustl.edu	37	chr16	68855995	68855996	+	Frame_Shift_Ins	INS	-	-	T													0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cagaacctcgaactatattcINSttctgtgagaggaatccaaa							TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	16	68855995	68855996	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1803_1804	p.C602fs	0.000:0.327	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	61	0	0	30	34	53.12	-	-	-	T	68855996	-	T	68855995	7	5	145	1	0	1	1	0	0	0	0	0	3124	912	32	0	1849	0	CDH1	16	68855995	Frame_Shift_Ins	INS	-	TCGA-A7-A4SB-01A-21D-A25Q-09	15331296	68855995	21498758	30	8460										
ACLY	0	genome.wustl.edu	37	chr17	40054937	40054937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	tgcagtgtgggccgctgtggGtggctggttggggatgggcc	22	7	0	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	17	40054937	40054937	G	T	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.1285	p.P429T	1.000	pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	75	0	0	78	45	36.59	-	-	-	T	40054937	G	T	40054937	3	4	145	1	0	0	0	0	1	0	0	0	143	1261	44	4	2092	4	ACLY	17	40054937	Missense_Mutation	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09		40054937	41140273	31	8461										
SERTAD3	0	genome.wustl.edu	37	chr19	40947664	40947664	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	ggattctgagggggctcagtCccatccatggaggtgtccag	15	10	2	1			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	19	40947664	40947664	C	T	SNP	SERTAD3	ENST00000322354	human	ensembl	69_37n	-1	known	silent	c.324	p.G108	0.227	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD3	HGNC	ENSG00000167565	37	0	0	34	25	42.37	-	-	-	T	40947664	C	T	40947664	2	4	145	1	0	0	0	0	0	0	0	1	14210	842	30	2		2	SERTAD3	19	40947664	Silent	SNP	C	TCGA-A7-A4SB-01A-21D-A25Q-09		40947664	18181319	32	8462										
CABIN1	0	genome.wustl.edu	37	chr22	24432554	24432554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	tagattcgaattgcagccttAaatgccagctccaccattga	7	11	0	2			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	22	24432554	24432554	A	C	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	missense	c.21	p.L7F	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	62	0	0	66	55	45.45	-	-	-	C	24432554	A	C	24432554	3	2	145	1	0	0	0	0	1	0	0	0	2553	359	13	5	27	5	CABIN1	22	24432554	Missense_Mutation	SNP	A	TCGA-A7-A4SB-01A-21D-A25Q-09		24432554	26872012	33	8463										
IFT27	0	genome.wustl.edu	37	chr22	37172131	37172131	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.235294117647059	8	0.0423759826946745	2.59323671497585	1.86388888888889	2.98222222222222	0.131934731934732	0.62934362934363	5	cgatcacaagtaccgggccgGatgcactctccaagcaacca	9	15	2	0			TCGA-A7-A4SB-01A-21D-A25Q-09	TCGA-A7-A4SB-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ec022e6-a735-448d-86b4-2854b80669f6	7888d0dc-9a75-417a-8dd6-3897de85f24b	22	37172131	37172131	G	A	SNP	IFT27	ENST00000476548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IFT27	HGNC	ENSG00000100360	34	0	0	28	4	12.5	-	-	-	A	37172131	G	A	37172131	1	1	145	0	1	0	0	0	0	0	0	0	7613	1189	41	2		2	IFT27	22	37172131	RNA	SNP	G	TCGA-A7-A4SB-01A-21D-A25Q-09	12739577	37172131	14132435	34	8464										
ADORA3	0	genome.wustl.edu	37	chr1	112032289	112032289	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tgaagagcctgaggcttaccGttaggaggccctctgtccct	12	12	1	3			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	1	112032289	112032289	G	A	SNP	ADORA3	ENST00000463993	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADORA3	HGNC	ENSG00000121933	56	0	0	24	13	35.14	-	-	-	A	112032289	G	A	112032289	1	1	146	0	1	0	0	0	0	0	0	0	329	1160	40	1		1	ADORA3	1	112032289	RNA	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09		112032289	137218332	1	8465										
NOTCH2	0	genome.wustl.edu	37	chr1	120465373	120465373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tgagtcttgaacacactggcGgttgtcaatttccagaaaga	10	8	2	4			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-11A-52D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	53bc33db-9b12-467b-aa69-b594ce0debee	1	120465373	120465373	G	C	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.4888	p.R1630G	1.000	pirsf_Notch,pfam_Notch_NODP_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	73	0	0	19	5	20.83	-	-	-	C	120465373	G	C	120465373	3	2	146	1	0	0	0	0	1	0	0	0	10620	1116	39	3	2559	3	NOTCH2	1	120465373	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	8433084	120465373	128785248	2	8466										
NOTCH2NL	0	genome.wustl.edu	37	chr1	145290819	145290819	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	cgaatcactgatggaattgcGcagtgcatggagatggctca	13	8	2	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-11A-52D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	53bc33db-9b12-467b-aa69-b594ce0debee	1	145290819	145290819	G	A	SNP	NOTCH2NL	ENST00000479995	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NOTCH2NL	HGNC	ENSG00000213240	35	0	0	30	5	14.29	-	-	-	A	145290819	G	A	145290819	1	1	146	0	1	0	0	0	0	0	0	0	10621	1102	38	1		1	NOTCH2NL	1	145290819	RNA	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	24825446	145290819	103959802	3	8467										
LYSMD1	0	genome.wustl.edu	37	chr1	151137721	151137721	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	cccctggcgggggctgtctaGacggggaagccatctcttca	14	13	3	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	1	151137721	151137721	G	A	SNP	LYSMD1	ENST00000368908	human	ensembl	69_37n	-1	known	missense	c.14	p.S5F	0.995	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD1	HGNC	ENSG00000163155	27	0	0	20	10	33.33	-	-	-	A	151137721	G	A	151137721	3	1	146	1	0	0	0	0	1	0	0	0	9191	942	33	2	681	2	LYSMD1	1	151137721	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	5846902	151137721	98112900	4	8468										
CACNA1E	0	genome.wustl.edu	37	chr1	181765969	181765969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	atccaggtcacccagtgaggGcaggtcacagacgcccaaca	11	14	2	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	1	181765969	181765969	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.6374	p.G2125V	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	38	0	0	33	12	26.67	-	-	-	T	181765969	G	T	181765969	3	4	146	1	0	0	0	0	1	0	0	0	2567	1203	42	4	6427	4	CACNA1E	1	181765969	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	30628248	181765969	67484652	5	8469										
F13B	0	genome.wustl.edu	37	chr1	197026274	197026274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	aaatcttagagtgtaaatttGctgcaccattttcaatgaag	7	6	2	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	1	197026274	197026274	G	T	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	missense	c.1040	p.A347E	0.020	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	35	0	0	53	12	18.46	-	-	-	T	197026274	G	T	197026274	3	4	146	1	0	0	0	0	1	0	0	0	5378	1319	46	4	969	4	F13B	1	197026274	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	15260305	197026274	52224347	6	8470										
ZP4	0	genome.wustl.edu	37	chr1	238048465	238048465	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	catggaagggaacatcctacCggtcccctgagggcctgttt	12	12	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	1	238048465	238048465	C	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	silent	c.1311	p.P437	0.901	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	32	0	0	42	8	16	-	-	-	T	238048465	C	T	238048465	2	4	146	1	0	0	0	0	0	0	0	1	18311	666	23	1		1	ZP4	1	238048465	Silent	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	41022191	238048465	11202156	7	8471										
PLCL2	0	genome.wustl.edu	37	chr3	17052497	17052497	+	Frame_Shift_Del	DEL	T	T	-													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tcacccaatgttgaggaatcTtatctaccatccccagatgt							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	3	17052497	17052497	T	-	DEL	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	frame_shift_del	c.1281	p.Y428fs	0.992	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	21	0	0	19	7	26.92	-	-	-	-	17052497	T	-	17052497	7	5	146	1	0	1	0	1	0	0	0	0	12114	1596	56	0	1659	0	PLCL2	3	17052497	Frame_Shift_Del	DEL	T	TCGA-A7-A4SC-01A-12D-A25Q-09		17052497	180969933	8	8472										
TRAT1	0	genome.wustl.edu	37	chr3	108541770	108541770	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	aaagatttctctgaaaaaaaGaagcatgtcaggtaagtggc	10	5	2	3			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	3	108541770	108541770	G	T	SNP	TRAT1	ENST00000493604	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.255	-	-	-	no_errors	TRAT1	HGNC	ENSG00000163519	61	0	0	49	18	26.87	-	-	-	T	108541770	G	T	108541770	1	4	146	0	1	0	0	0	0	0	0	0	16562	957	33	2		2	TRAT1	3	108541770	RNA	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	91489273	108541770	89480660	9	8473										
C3orf52	0	genome.wustl.edu	37	chr3	111805270	111805270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ggcacatggacctggcccaaCcctcacagccagtagacgag	11	15	1	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	3	111805270	111805270	C	T	SNP	C3orf52	ENST00000431717	human	ensembl	69_37n	1	known	missense	c.16	p.P6S	0.000	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529	69	0	0	39	11	22	-	-	-	T	111805270	C	T	111805270	3	4	146	1	0	0	0	0	1	0	0	0	2252	507	18	4	18	4	C3orf52	3	111805270	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	3263500	111805270	86217160	10	8474										
ANK2	0	genome.wustl.edu	37	chr4	114267087	114267087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gactcaggaaccttgcggacGactatcatttatgaaggagc	11	9	2	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	4	114267087	114267087	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.4280	p.R1427Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	45	0	0	36	16	30.77	-	-	-	A	114267087	G	A	114267087	3	1	146	1	0	0	0	0	1	0	0	0	621	1058	37	1	4483	1	ANK2	4	114267087	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09		114267087	76887189	11	8475										
CDKL3	0	genome.wustl.edu	37	chr5	133644285	133644285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ctttcccaaaactgaactacTtagcagtgtattggtataaa	6	8	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	5	133644285	133644285	T	G	SNP	CDKL3	ENST00000265334	human	ensembl	69_37n	-1	known	missense	c.1015	p.S339R	0.126	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL3	HGNC	ENSG00000006837	45	0	0	26	5	16.13	-	-	-	G	133644285	T	G	133644285	3	3	146	1	0	0	0	0	1	0	0	0	3184	1609	56	5	791	5	CDKL3	5	133644285	Missense_Mutation	SNP	T	TCGA-A7-A4SC-01A-12D-A25Q-09		133644285	47270975	12	8476										
CD74	0	genome.wustl.edu	37	chr5	149784309	149784309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	catttcaaacaggagccaatGgtgcatccagctctcaaaga	8	11	2	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	5	149784309	149784309	G	T	SNP	CD74	ENST00000009530	human	ensembl	69_37n	-1	known	missense	c.559	p.H187N	1.000	pfam_MHC_II-assoc_invariant_trimer,superfamily_MHC_II-assoc_invariant_trimer,superfamily_Thyroglobulin_1,pirsf_MHC_II-assoc_invar_chain,prints_MHC_II-assoc_invar_chain	pfam_MHC_II-assoc_invar/CLIP_MHC-bd,pfam_MHC_II-assoc_invariant_trimer,pfam_Thyroglobulin_1,superfamily_MHC_II-assoc_invariant_trimer,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_MHC_II-assoc_invar_chain,pfscan_Thyroglobulin_1,prints_MHC_II-assoc_invar_chain	-	no_errors	CD74	HGNC	ENSG00000019582	28	0	0	17	4	19.05	-	-	-	T	149784309	G	T	149784309	3	4	146	1	0	0	0	0	1	0	0	0	3064	1348	47	4	347	4	CD74	5	149784309	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	16140024	149784309	31130951	13	8477										
YIPF3	0	genome.wustl.edu	37	chr6	43483923	43483923	+	Frame_Shift_Del	DEL	C	C	-													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gggtttagggctttgttcttCcactgctgaggatacggctt							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	6	43483923	43483923	C	-	DEL	YIPF3	ENST00000490447	human	ensembl	69_37n	-1	known	frame_shift_del	c.87	p.W29fs	0.002	NULL	NULL	-	no_errors	YIPF3	HGNC	ENSG00000137207	9	0	0	3	2	40	-	-	-	-	43483923	C	-	43483923	7	5	146	1	0	1	0	1	0	0	0	0	17576	870	30	0		0	YIPF3	6	43483923	Frame_Shift_Del	DEL	C	TCGA-A7-A4SC-01A-12D-A25Q-09		43483923	127631144	14	8478										
VEGFA	0	genome.wustl.edu	37	chr6	43739002	43739003	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	catgaactttctgctgtcttINSgggtgcattggagccttgcc							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-11A-52D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	53bc33db-9b12-467b-aa69-b594ce0debee	6	43739002	43739003	-	G	INS	VEGFA	ENST00000372055	human	ensembl	69_37n	1	known	frame_shift_ins	c.559_560	p.V188fs	1.000:1.000	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFA	HGNC	ENSG00000112715	49	0	0	16	2	11.11	-	-	-	G	43739003	-	G	43739002	7	5	146	1	0	1	1	0	0	0	0	0	17247	1812	63	0	561	0	VEGFA	6	43739002	Frame_Shift_Ins	INS	-	TCGA-A7-A4SC-01A-12D-A25Q-09	255079	43739002	127376065	15	8479										
HOXA3	0	genome.wustl.edu	37	chr7	27148062	27148062	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ccaccggctccggggggcacGgggctgcgacttggagactg	18	13	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	7	27148062	27148062	G	A	SNP	HOXA3	ENST00000317201	human	ensembl	69_37n	-1	known	silent	c.804	p.P268	0.002	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997	53	0	0	46	16	25.81	-	-	-	A	27148062	G	A	27148062	2	1	146	1	0	0	0	0	0	0	0	1	7344	1103	39	1		1	HOXA3	7	27148062	Silent	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09		27148062	131990601	16	8480										
CHD7	0	genome.wustl.edu	37	chr8	61655528	61655528	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	catcttttcagcagttgccaAcctgtcctccactgcagcct	6	16	2	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	8	61655528	61655528	A	T	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.1537	p.T513S	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	29	0	0	31	7	18.42	-	-	-	T	61655528	A	T	61655528	3	4	146	1	0	0	0	0	1	0	0	0	3359	43	2	5	1539	5	CHD7	8	61655528	Missense_Mutation	SNP	A	TCGA-A7-A4SC-01A-12D-A25Q-09		61655528	84708494	17	8481										
C8orf47	0	genome.wustl.edu	37	chr8	99101489	99101489	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gtgttaaacccctccaagaaCagcccctggccaaggacgta	9	14	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	8	99101489	99101489	C	A	SNP	C8orf47	ENST00000318528	human	ensembl	69_37n	1	known	missense	c.244	p.Q82K	0.025	NULL	NULL	-	no_errors	C8orf47	HGNC	ENSG00000177459	21	0	0	16	6	27.27	-	-	-	A	99101489	C	A	99101489	3	1	146	1	0	0	0	0	1	0	0	0	2456	479	17	4	250	4	C8orf47	8	99101489	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	37445961	99101489	47262533	18	8482										
EIF2C2	0	genome.wustl.edu	37	chr8	141549448	141549448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	cttgtcagtgcagaagagccGggtgtggtgcctcttctgca	14	10	3	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	8	141549448	141549448	G	A	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.2140	p.R714W	0.083	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	56	0	0	73	35	32.41	-	-	-	A	141549448	G	A	141549448	3	1	146	1	0	0	0	0	1	0	0	0	5041	1115	39	1	455	1	EIF2C2	8	141549448	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	42447959	141549448	4814574	19	8483										
FAM83H	0	genome.wustl.edu	37	chr8	144808720	144808720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gcccttggggctcagcagctGcctaagacgcaaggagcctt	13	13	1	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-11A-52D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	53bc33db-9b12-467b-aa69-b594ce0debee	8	144808720	144808720	G	T	SNP	FAM83H	ENST00000388913	human	ensembl	69_37n	-1	known	missense	c.2911	p.Q971K	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921	24	0	0	5	3	37.5	-	-	-	T	144808720	G	T	144808720	3	4	146	1	0	0	0	0	1	0	0	0	5685	1328	46	4	632	4	FAM83H	8	144808720	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	3259272	144808720	1555302	20	8484										
ANKRD20A1	0	genome.wustl.edu	37	chr9	67934804	67934804	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tattgaaaaagaaagcaagtTcacatgccgttgataggctg	10	6	1	3			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	9	67934804	67934804	T	A	SNP	ANKRD20A1	ENST00000377477	human	ensembl	69_37n	1	known	missense	c.574	p.S192T	0.007	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A1	HGNC	ENSG00000196774	30	0	0	37	14	27.45	-	-	-	A	67934804	T	A	67934804	3	1	146	1	0	0	0	0	1	0	0	0	648	1783	62	5	588	5	ANKRD20A1	9	67934804	Missense_Mutation	SNP	T	TCGA-A7-A4SC-01A-12D-A25Q-09		67934804	73278627	21	8485										
DAPK1	0	genome.wustl.edu	37	chr9	90321697	90321697	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ctgaccgtgaagcattacctGagcccccagcagctgcggga	12	14	0	3			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	9	90321697	90321697	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	silent	c.3786	p.L1262	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	23	0	0	20	4	16.67	-	-	-	A	90321697	G	A	90321697	2	1	146	1	0	0	0	0	0	0	0	1	4267	1277	45	2		2	DAPK1	9	90321697	Silent	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	22386893	90321697	50891734	22	8486										
HK1	0	genome.wustl.edu	37	chr10	71129355	71129355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ttgacagggagatagaccggGgatccctcaaccctggaaaa	12	10	1	3			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	10	71129355	71129355	G	A	SNP	HK1	ENST00000448642	human	ensembl	69_37n	1	known	missense	c.955	p.G319R	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515	36	0	0	40	11	21.57	-	-	-	A	71129355	G	A	71129355	3	1	146	1	0	0	0	0	1	0	0	0	7241	1233	43	4	1054	4	HK1	10	71129355	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09		71129355	64405392	23	8487										
BTBD11	0	genome.wustl.edu	37	chr12	108011110	108011110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tggttagtttgctgttggagCgtggtgccgatcccctgata	14	8	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	12	108011110	108011110	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	69_37n	1	known	missense	c.2128	p.R710C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	69	0	0	50	15	23.08	-	-	-	T	108011110	C	T	108011110	3	4	146	1	0	0	0	0	1	0	0	0	1547	768	27	1	2267	1	BTBD11	12	108011110	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09		108011110	25840785	24	8488										
RIMBP2	0	genome.wustl.edu	37	chr12	130921495	130921495	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	aggatgcggctgggtgagggCgaccgccttccggggcccac	18	13	0	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	12	130921495	130921495	C	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.1947	p.S649	0.001	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	46	0	0	24	8	25	-	-	-	A	130921495	C	A	130921495	2	1	146	1	0	0	0	0	0	0	0	1	13447	755	27	3		3	RIMBP2	12	130921495	Silent	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	22910385	130921495	2930400	25	8489										
DAAM1	0	genome.wustl.edu	37	chr14	59836141	59836141	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	accagctttgaatttctgacAttggtgtggggatacagtct	11	7	2	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	14	59836141	59836141	A	G	SNP	DAAM1	ENST00000553966	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592	85	0	0	67	17	20.24	-	-	-	G	59836141	A	G	59836141	1	3	146	0	1	0	0	0	0	0	0	0	4247	232	8	5		5	DAAM1	14	59836141	RNA	SNP	A	TCGA-A7-A4SC-01A-12D-A25Q-09		59836141	47513399	26	8490										
CDH1	0	genome.wustl.edu	37	chr16	68845617	68845618	+	Frame_Shift_Del	DEL	AC	AC	-													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gatggaggtcacagccacagAcgcggacgatgatgtgaaca							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	16	68845617	68845618	AC	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.863_864	p.D288fs	0.991:0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	85	0	0	43	7	13.73	-	-	-	-	68845618	AC	-	68845617	7	5	146	1	0	1	0	1	0	0	0	0	3124	275	10	0	889	0	CDH1	16	68845617	Frame_Shift_Del	DEL	AC	TCGA-A7-A4SC-01A-12D-A25Q-09		68845617	21509136	27	8491										
ODF3L2	0	genome.wustl.edu	37	chr19	463881	463881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gcagcctgtgccccgcaggcCgggagggcgtggtggcggcc	20	14	0	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	463881	463881	C	T	SNP	ODF3L2	ENST00000315489	human	ensembl	69_37n	-1	known	missense	c.833	p.R278Q	0.000	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	32	0	0	14	3	17.65	-	-	-	T	463881	C	T	463881	3	4	146	1	0	0	0	0	1	0	0	0	10905	652	23	1	40	1	ODF3L2	19	463881	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09		463881	58665102	28	8492										
ACTL9	0	genome.wustl.edu	37	chr19	8807880	8807880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	cccagcaggactggaaggcgCgcagggaggccaggatggag	19	10	0	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	8807880	8807880	C	T	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	missense	c.1172	p.R391H	0.971	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	68	0	0	46	15	24.19	-	-	-	T	8807880	C	T	8807880	3	4	146	1	0	0	0	0	1	0	0	0	203	768	27	1	82	1	ACTL9	19	8807880	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	8343999	8807880	50321103	29	8493										
ZNF846	0	genome.wustl.edu	37	chr19	9869048	9869048	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ataaggtgtgaggaattactGaaggctttcccacattcctt	9	8	0	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	9869048	9869048	G	A	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	silent	c.705	p.F235	0.081	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	70	0	0	65	20	23.53	-	-	-	A	9869048	G	A	9869048	2	1	146	1	0	0	0	0	0	0	0	1	18285	1281	45	2		2	ZNF846	19	9869048	Silent	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	1061168	9869048	49259935	30	8494										
ZNF333	0	genome.wustl.edu	37	chr19	14817558	14817558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	cagtgcctactctgggccacCgcaacccatgggtggccagg	13	15	1	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	14817558	14817558	C	T	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	missense	c.484	p.R162C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	54	0	0	36	9	20	-	-	-	T	14817558	C	T	14817558	3	4	146	1	0	0	0	0	1	0	0	0	17946	652	23	1	506	1	ZNF333	19	14817558	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	4948510	14817558	44311425	31	8495										
CYP2A13	0	genome.wustl.edu	37	chr19	41596408	41596408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tgactatgaggacaaagagtTcctgtcactgttgcgcatga	11	8	1	4			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	41596408	41596408	T	G	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.593	p.F198C	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	183	0	0	127	36	22.09	-	-	-	G	41596408	T	G	41596408	3	3	146	1	0	0	0	0	1	0	0	0	4192	1783	62	5	607	5	CYP2A13	19	41596408	Missense_Mutation	SNP	T	TCGA-A7-A4SC-01A-12D-A25Q-09	26778850	41596408	17532575	32	8496										
ZNF8	0	genome.wustl.edu	37	chr19	58797478	58797478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gtttttccccatttccaggtCctgagcttccgaagcctgaa	8	13	0	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	19	58797478	58797478	C	T	SNP	ZNF8	ENST00000196548	human	ensembl	69_37n	1	known	missense	c.196	p.P66S	0.976	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	HGNC	ENSG00000083842	88	0	0	74	15	16.85	-	-	-	T	58797478	C	T	58797478	3	4	146	1	0	0	0	0	1	0	0	0	18260	855	30	2	206	2	ZNF8	19	58797478	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	17201070	58797478	331505	33	8497										
SEL1L2	0	genome.wustl.edu	37	chr20	13830252	13830252	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	agttccatctcgttgtgaacTgctggcaagagacattctct	9	10	2	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	20	13830252	13830252	T	A	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	splice_site	c.1948-2	e20-2	0.998	-	-	-	no_errors	SEL1L2	HGNC	ENSG00000101251	39	0	0	26	8	23.53	-	-	-	A	13830252	T	A	13830252	5	1	146	1	0	0	0	0	0	0	1	0	14099	1594	55	5	124	5	SEL1L2	20	13830252	Splice_Site	SNP	T	TCGA-A7-A4SC-01A-12D-A25Q-09		13830252	49195268	34	8498										
PYGB	0	genome.wustl.edu	37	chr20	25273190	25273190	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	atggccgaggaggccggggcCgagaacctcttcatcttcgg	15	12	3	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	20	25273190	25273190	C	G	SNP	PYGB	ENST00000428458	human	ensembl	69_37n	1	known	missense	c.374	p.P125R	0.017	pfam_Glyco_trans_35	pfam_Glyco_trans_35	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PYGB	HGNC	ENSG00000100994	93	0	0	63	25	28.09	-	-	-	G	25273190	C	G	25273190	3	3	146	1	0	0	0	0	1	0	0	0	12943	639	23	3	2184	3	PYGB	20	25273190	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	11442938	25273190	37752330	35	8499										
CBLN4	0	genome.wustl.edu	37	chr20	54579033	54579033	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	gcgaccttggagttggccgcCcggaccgatatccccagcgg	14	15	0	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-11A-52D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	53bc33db-9b12-467b-aa69-b594ce0debee	20	54579033	54579033	C	T	SNP	CBLN4	ENST00000064571	human	ensembl	69_37n	-1	known	silent	c.195	p.R65	1.000	smart_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN4	HGNC	ENSG00000054803	59	0	0	26	4	13.33	-	-	-	T	54579033	C	T	54579033	2	4	146	1	0	0	0	0	0	0	0	1	2732	610	22	4		4	CBLN4	20	54579033	Silent	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09	29305843	54579033	8446487	36	8500										
CSNK1E	0	genome.wustl.edu	37	chr22	38710134	38710134	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tcccgatcttccgtcccaggCggtacttgttccccacacgt	8	17	1	0			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	22	38710134	38710134	C	A	SNP	CSNK1E	ENST00000359867	human	ensembl	69_37n	-1	known	missense	c.29	p.R10L	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923	53	0	0	27	5	15.62	-	-	-	A	38710134	C	A	38710134	3	1	146	1	0	0	0	0	1	0	0	0	3985	768	27	3	1257	3	CSNK1E	22	38710134	Missense_Mutation	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09		38710134	12594432	37	8501										
CBY1	0	genome.wustl.edu	37	chr22	39069235	39069235	+	Frame_Shift_Del	DEL	A	A	-													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	ctgaggatcagccggaagagAaaatgaagaccccagagaca							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	22	39069235	39069235	A	-	DEL	CBY1	ENST00000216029	human	ensembl	69_37n	1	known	frame_shift_del	c.375	p.K126fs	0.949	NULL	NULL	-	no_errors	CBY1	HGNC	ENSG00000100211	105	0	0	42	21	33.33	-	-	-	-	39069235	A	-	39069235	7	5	146	1	0	1	0	1	0	0	0	0	2750	243	9	0	389	0	CBY1	22	39069235	Frame_Shift_Del	DEL	A	TCGA-A7-A4SC-01A-12D-A25Q-09	359101	39069235	12235331	38	8502										
KLHL15	0	genome.wustl.edu	37	chrX	24006791	24006791	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	tgcagccaggagttctgtctCgggtcatacctgaatacttt	10	10	3	1			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	X	24006791	24006791	C	T	SNP	KLHL15	ENST00000328046	human	ensembl	69_37n	-1	known	silent	c.1062	p.P354	0.159	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	46	0	0	36	14	28	-	-	-	T	24006791	C	T	24006791	2	4	146	1	0	0	0	0	0	0	0	1	8424	871	31	1		1	KLHL15	23	24006791	Silent	SNP	C	TCGA-A7-A4SC-01A-12D-A25Q-09		24006791	131263769	39	8503										
PRICKLE3	0	genome.wustl.edu	37	chrX	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-													0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	agaaataggttcccacctgaGtgtgtgtgtgtgtgtgagca							TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	69_37n	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	50	0	0	25	3	10.71	-	-	-	-	49040117	GT	-	49040116	7	5	146	1	0	1	0	1	0	0	0	0	12569	1044	36	0		0	PRICKLE3	23	49040116	Frame_Shift_Del	DEL	GT	TCGA-A7-A4SC-01A-12D-A25Q-09	25033325	49040116	106230444	40	8504										
NRK	0	genome.wustl.edu	37	chrX	105179171	105179171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0731707317073171	3	0.79133532817198	1.25368421052632	0	1.39298245614035	0.142857142857143	0.62934362934363	0	catctttgcagtatacgctgGattcgtagaagtacctgagg	11	8	1	2			TCGA-A7-A4SC-01A-12D-A25Q-09	TCGA-A7-A4SC-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c40d9be5-f017-4344-b3da-05330706ccfb	548fcaa0-101b-4c84-b65e-1bec3a6a4354	X	105179171	105179171	G	T	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.3512	p.G1171V	0.058	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	81	0	0	66	13	16.46	-	-	-	T	105179171	G	T	105179171	3	4	146	1	0	0	0	0	1	0	0	0	10728	1174	41	2	3591	2	NRK	23	105179171	Missense_Mutation	SNP	G	TCGA-A7-A4SC-01A-12D-A25Q-09	56139055	105179171	50091389	41	8505										
NBPF1	0	genome.wustl.edu	37	chr1	16889890	16889891	+	RNA	DEL	TG	TG	-													0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ccaattggaggctgaaggacTgtggcttctctaaccaaagg							TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-11A-43D-A25Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	727808a9-5f85-47b1-ad15-2f6bb5a231dd	1	16889890	16889891	TG	-	DEL	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	9	0	0	7	4	36.36	-	-	-	-	16889891	TG	-	16889890	6	5	147	0	1	1	0	1	0	0	0	0	10264	1595	55	0		0	NBPF1	1	16889890	RNA	DEL	TG	TCGA-A7-A4SD-01A-11D-A25Q-09		16889890	232360731	1	8506										
GPBP1L1	0	genome.wustl.edu	37	chr1	46121010	46121010	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gactaagatgatgaagtatgGagaggcaaatggataaatag	13	2	0	4			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	46121010	46121010	G	A	SNP	GPBP1L1	ENST00000496278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPBP1L1	HGNC	ENSG00000159592	66	0	0	72	19	20.88	-	-	-	A	46121010	G	A	46121010	1	1	147	0	1	0	0	0	0	0	0	0	6646	1189	41	2		2	GPBP1L1	1	46121010	RNA	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	29231120	46121010	203129611	2	8507										
LRRC8D	0	genome.wustl.edu	37	chr1	90400208	90400208	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgccactgccctgcaaaagtTgaacagactgcttttagctt	8	11	0	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	90400208	90400208	T	C	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	silent	c.1581	p.V527	0.002	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	53	0	0	69	18	20.69	-	-	-	C	90400208	T	C	90400208	2	2	147	1	0	0	0	0	0	0	0	1	9090	1799	63	5		5	LRRC8D	1	90400208	Silent	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09	44279198	90400208	158850413	3	8508										
ADORA3	0	genome.wustl.edu	37	chr1	112042833	112042833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	aacaagaaaagaaccagaaaCaaggacttagccgtcttgaa	8	8	1	4			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	112042833	112042833	C	T	SNP	ADORA3	ENST00000241356	human	ensembl	69_37n	-1	known	silent	c.696	p.L232	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA3	HGNC	ENSG00000121933	41	0	0	24	6	20	-	-	-	T	112042833	C	T	112042833	2	4	147	1	0	0	0	0	0	0	0	1	329	477	17	4		4	ADORA3	1	112042833	Silent	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	21642625	112042833	137207788	4	8509										
KPRP	0	genome.wustl.edu	37	chr1	152732300	152732300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gaagtgccagtctaagaccaAgcaggtgaagggccaggctc	14	10	1	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	152732300	152732300	A	G	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	missense	c.236	p.K79R	0.031	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	65	0	0	79	15	15.96	-	-	-	G	152732300	A	G	152732300	3	3	147	1	0	0	0	0	1	0	0	0	8489	72	3	5	238	5	KPRP	1	152732300	Missense_Mutation	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09	40689467	152732300	96518321	5	8510										
LCE1D	0	genome.wustl.edu	37	chr1	152770503	152770503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ctgcctgagccaccacaggcGccacaggtcccaccgtcgca	10	19	0	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	152770503	152770503	G	A	SNP	LCE1D	ENST00000326233	human	ensembl	69_37n	1	known	missense	c.233	p.R78H	0.956	NULL	NULL	-	no_errors	LCE1D	HGNC	ENSG00000172155	51	0	0	81	13	13.83	-	-	-	A	152770503	G	A	152770503	3	1	147	1	0	0	0	0	1	0	0	0	8716	1087	38	1	235	1	LCE1D	1	152770503	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	38203	152770503	96480118	6	8511										
SLAMF9	0	genome.wustl.edu	37	chr1	159923336	159923336	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gtgagaggaccagatgatgtTctcaacctcttcatctggtg	11	9	4	3			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	159923336	159923336	T	A	SNP	SLAMF9	ENST00000368093	human	ensembl	69_37n	-1	known	missense	c.154	p.N52Y	0.000	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF9	HGNC	ENSG00000162723	45	0	0	93	14	13.08	-	-	-	A	159923336	T	A	159923336	3	1	147	1	0	0	0	0	1	0	0	0	14460	1783	62	5	727	5	SLAMF9	1	159923336	Missense_Mutation	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09	7152833	159923336	89327285	7	8512										
IGFN1	0	genome.wustl.edu	37	chr1	201176353	201176353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	acaaaactggccctggaggcCcaggagaccccagaggctgc	13	14	0	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	201176353	201176353	C	T	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.2332	p.P778S	0.009	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	28	0	0	53	6	10.17	-	-	-	T	201176353	C	T	201176353	3	4	147	1	0	0	0	0	1	0	0	0	7644	623	22	4	2374	4	IGFN1	1	201176353	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	41253017	201176353	48074268	8	8513										
CENPF	0	genome.wustl.edu	37	chr1	214795494	214795494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	agaaatgaaaggccaagtgaAtaagtttcaagaactccaac	8	7	1	4			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	1	214795494	214795494	A	G	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.938	p.N313S	0.970	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	50	0	0	32	9	21.95	-	-	-	G	214795494	A	G	214795494	3	3	147	1	0	0	0	0	1	0	0	0	3260	101	4	5	960	5	CENPF	1	214795494	Missense_Mutation	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09	13619141	214795494	34455127	9	8514										
SIX3	0	genome.wustl.edu	37	chr2	45169910	45169910	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ggactcggagcctgttgcggGagtggtacctacaggacccc	15	12	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	2	45169910	45169910	G	T	SNP	SIX3	ENST00000260653	human	ensembl	69_37n	1	known	nonsense	c.667	p.E223*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX3	HGNC	ENSG00000138083	80	0	0	68	17	20	-	-	-	T	45169910	G	T	45169910	4	4	147	1	0	0	0	0	0	1	0	0	14437	1175	41	2	669	2	SIX3	2	45169910	Nonsense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09		45169910	198029463	10	8515										
PROC	0	genome.wustl.edu	37	chr2	128178906	128178906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	cccaccaggtgctgcggatcCgcaaacgtgccaactccttc	9	17	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	2	128178906	128178906	C	T	SNP	PROC	ENST00000453608	human	ensembl	69_37n	1	known	missense	c.181	p.R61C	0.881	pirsf_Pept_S1A_FX,smart_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROC	HGNC	ENSG00000115718	24	0	0	19	4	17.39	-	-	-	T	128178906	C	T	128178906	3	4	147	1	0	0	0	0	1	0	0	0	12626	652	23	1	124	1	PROC	2	128178906	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	83008996	128178906	115020467	11	8516										
R3HDM1	0	genome.wustl.edu	37	chr2	136379141	136379141	+	Frame_Shift_Del	DEL	G	G	-													0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gatgaagcagaaaaagaaaaGgccagtgataagttgcccag							TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	2	136379141	136379141	G	-	DEL	R3HDM1	ENST00000264160	human	ensembl	69_37n	1	known	frame_shift_del	c.381	p.A128fs	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	73	0	0	83	10	10.53	-	-	-	-	136379141	G	-	136379141	7	5	147	1	0	1	0	1	0	0	0	0	12970	991	35	0	395	0	R3HDM1	2	136379141	Frame_Shift_Del	DEL	G	TCGA-A7-A4SD-01A-11D-A25Q-09	8200235	136379141	106820232	12	8517										
FSIP2	0	genome.wustl.edu	37	chr2	186673617	186673617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gttccacatgttggaaaaaaAccagtcaaaatagatccaaa	6	8	1	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	2	186673617	186673617	A	C	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.19851	p.K6617N	0.460	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	39	0	0	59	7	10.45	-	-	-	C	186673617	A	C	186673617	3	2	147	1	0	0	0	0	1	0	0	0	6124	40	2	5	19917	5	FSIP2	2	186673617	Missense_Mutation	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09	50294476	186673617	56525756	13	8518										
ATP2B2	0	genome.wustl.edu	37	chr3	10491115	10491115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgaccacagcctcagtgcccCgcagctccatgagggagcgg	13	15	1	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	3	10491115	10491115	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.113	p.R38Q	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	98	0	0	120	27	18.37	-	-	-	T	10491115	C	T	10491115	3	4	147	1	0	0	0	0	1	0	0	0	1144	652	23	1	3706	1	ATP2B2	3	10491115	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		10491115	187531315	14	8519										
HEG1	0	genome.wustl.edu	37	chr3	124732410	124732410	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	agaggcaaaggaggccctgaAgaagaagaagaggaggagga	18	4	0	6			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-11A-43D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	727808a9-5f85-47b1-ad15-2f6bb5a231dd	3	124732410	124732410	A	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	silent	c.2013	p.S671	0.018	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	26	0	0	28	7	20	-	-	-	G	124732410	A	G	124732410	2	3	147	1	0	0	0	0	0	0	0	1	7095	59	3	5		5	HEG1	3	124732410	Silent	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09	114241295	124732410	73290020	15	8520										
PCDHA13	0	genome.wustl.edu	37	chr5	140263298	140263298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	cacggtgtctgctcaggacgCggacgcacaggagaacgcgc	15	13	2	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	5	140263298	140263298	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1445	p.A482V	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	193	0	0	152	48	24	-	-	-	T	140263298	C	T	140263298	3	4	147	1	0	0	0	0	1	0	0	0	11596	768	27	1	1447	1	PCDHA13	5	140263298	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		140263298	40651962	16	8521										
PCDHGB7	0	genome.wustl.edu	37	chr5	140798221	140798221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	acctccatcctgagagtgaaGgccactgaccaggacgaggg	13	12	0	3			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	5	140798221	140798221	G	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.795	p.K265N	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	64	0	0	40	12	23.08	-	-	-	T	140798221	G	T	140798221	3	4	147	1	0	0	0	0	1	0	0	0	11641	991	35	4	797	4	PCDHGB7	5	140798221	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	534923	140798221	40117039	17	8522										
ADAM19	0	genome.wustl.edu	37	chr5	156907975	156907975	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gtctagattttcgagctaatCatccctccagccctctgtga	7	13	3	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	5	156907975	156907975	C	T	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	missense	c.2745	p.M915I	0.010	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	45	0	0	53	6	10.17	-	-	-	T	156907975	C	T	156907975	3	4	147	1	0	0	0	0	1	0	0	0	240	826	29	2	21	2	ADAM19	5	156907975	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	16109754	156907975	24007285	18	8523										
DDO	0	genome.wustl.edu	37	chr6	110729556	110729556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ccctgataccaaatgaacacCagcatctccagcttctgcag	6	15	2	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	6	110729556	110729556	C	T	SNP	DDO	ENST00000368924	human	ensembl	69_37n	-1	known	missense	c.346	p.G116S	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DDO	HGNC	ENSG00000203797	63	0	0	76	48	38.71	-	-	-	T	110729556	C	T	110729556	3	4	147	1	0	0	0	0	1	0	0	0	4365	594	21	4	775	4	DDO	6	110729556	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		110729556	60385511	19	8524										
BLVRA	0	genome.wustl.edu	37	chr7	43846680	43846680	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gaatgtgccaaatgtaggagTgaataagaacatatttctga	10	4	1	3			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	7	43846680	43846680	T	C	SNP	BLVRA	ENST00000265523	human	ensembl	69_37n	1	known	missense	c.737	p.V246A	0.009	pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605	42	0	0	30	6	16.67	-	-	-	C	43846680	T	C	43846680	3	2	147	1	0	0	0	0	1	0	0	0	1456	1696	59	5	763	5	BLVRA	7	43846680	Missense_Mutation	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09		43846680	115291983	20	8525										
SMURF1	0	genome.wustl.edu	37	chr7	98645333	98645333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gatttcttctctggacacttCgatgcggcaatgaccagctt	9	11	2	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	7	98645333	98645333	C	T	SNP	SMURF1	ENST00000361125	human	ensembl	69_37n	-1	known	missense	c.1204	p.E402K	1.000	superfamily_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF1	HGNC	ENSG00000198742	54	0	0	61	29	32.22	-	-	-	T	98645333	C	T	98645333	3	4	147	1	0	0	0	0	1	0	0	0	14908	893	31	1	1105	1	SMURF1	7	98645333	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	54798653	98645333	60493330	21	8526										
MLL3	0	genome.wustl.edu	37	chr7	151945694	151945694	+	Frame_Shift_Del	DEL	G	G	-													0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	caattcagtattcactgtatGttgggatgatactacaaaat							TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	7	151945694	151945694	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.1825	p.H609fs	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	29	0	0	14	17	53.12	-	-	-	-	151945694	G	-	151945694	7	5	147	1	0	1	0	1	0	0	0	0	9693	1377	48	0	13094	0	MLL3	7	151945694	Frame_Shift_Del	DEL	G	TCGA-A7-A4SD-01A-11D-A25Q-09	53300361	151945694	7192969	22	8527										
SFRP1	0	genome.wustl.edu	37	chr8	41122697	41122697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ccgggagaatcacttaaacaCggactgaaaggtggggcact	13	9	1	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	8	41122697	41122697	C	T	SNP	SFRP1	ENST00000220772	human	ensembl	69_37n	-1	known	missense	c.934	p.V312M	0.951	NULL	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332	42	0	0	68	18	20.93	-	-	-	T	41122697	C	T	41122697	3	4	147	1	0	0	0	0	1	0	0	0	14249	536	19	1	14	1	SFRP1	8	41122697	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		41122697	105241325	23	8528										
ZNF704	0	genome.wustl.edu	37	chr8	81553683	81553683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tctccatcccgtacaccttcCgacactttttgccctctccc	3	20	2	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	8	81553683	81553683	C	T	SNP	ZNF704	ENST00000327835	human	ensembl	69_37n	-1	known	missense	c.1157	p.R386Q	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	148	0	0	205	35	14.58	-	-	-	T	81553683	C	T	81553683	3	4	147	1	0	0	0	0	1	0	0	0	18203	652	23	1	85	1	ZNF704	8	81553683	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	40430986	81553683	64810339	24	8529										
RHPN1	0	genome.wustl.edu	37	chr8	144462047	144462047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ggaccatggcccagccacccGtccacgactacgtgcctgtc	10	18	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	8	144462047	144462047	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	69_37n	1	known	missense	c.994	p.V332I	0.694	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106	160	0	0	180	41	18.55	-	-	-	A	144462047	G	A	144462047	3	1	147	1	0	0	0	0	1	0	0	0	13434	1145	40	1	1028	1	RHPN1	8	144462047	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	62908364	144462047	1901975	25	8530										
DBC1	0	genome.wustl.edu	37	chr9	121929581	121929581	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	aagaggagcatcactgacgaAgaggaatagaactggccgcc	13	9	1	4			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	9	121929581	121929581	A	C	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.2067	p.S689	0.058	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	16	0	0	27	9	25	-	-	-	C	121929581	A	C	121929581	2	2	147	1	0	0	0	0	0	0	0	1	4279	59	3	5		5	DBC1	9	121929581	Silent	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09		121929581	19283850	26	8531										
MRPS2	0	genome.wustl.edu	37	chr9	138395623	138395623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ggggcggcatgctgaccaacGcgcgcctcctctttggcccc	13	17	1	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	9	138395623	138395623	G	A	SNP	MRPS2	ENST00000241600	human	ensembl	69_37n	1	known	missense	c.535	p.A179T	0.998	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	39	0	0	30	10	25	-	-	-	A	138395623	G	A	138395623	3	1	147	1	0	0	0	0	1	0	0	0	9903	1087	38	1	549	1	MRPS2	9	138395623	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	16466042	138395623	2817808	27	8532										
PPYR1	0	genome.wustl.edu	37	chr10	47087803	47087803	+	Frame_Shift_Del	DEL	C	C	-													0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	aaggccctggtgctgacttgCcagcagagcgcccccctgga							TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	10	47087803	47087803	C	-	DEL	PPYR1	ENST00000374312	human	ensembl	69_37n	1	known	frame_shift_del	c.1020	p.Q341fs	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_NPY4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PPYR1	HGNC	ENSG00000204174	188	0	0	275	65	18.9	-	-	-	-	47087803	C	-	47087803	7	5	147	1	0	1	0	1	0	0	0	0	12493	747	26	0	1022	0	PPYR1	10	47087803	Frame_Shift_Del	DEL	C	TCGA-A7-A4SD-01A-11D-A25Q-09		47087803	88446944	28	8533										
RGR	0	genome.wustl.edu	37	chr10	86017648	86017648	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	cctgtgacaatttctccccaGgtaaacaccactctgccagc	6	16	2	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	10	86017648	86017648	G	T	SNP	RGR	ENST00000359452	human	ensembl	69_37n	1	known	splice_site	c.643-1	e6-1	1.000	-	-	-	no_errors	RGR	HGNC	ENSG00000148604	33	0	0	35	4	10.26	-	-	-	T	86017648	G	T	86017648	5	4	147	1	0	0	0	0	0	0	1	0	13375	1014	35	4	664	4	RGR	10	86017648	Splice_Site	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	38929845	86017648	49517099	29	8534										
PCGF6	0	genome.wustl.edu	37	chr10	105110525	105110527	+	In_Frame_Del	DEL	TCC	TCC	-													0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tcaacgagaagtgactcatgTcctcctcctcctcctcttct							TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	10	105110525	105110527	TCC	-	DEL	PCGF6	ENST00000369847	human	ensembl	69_37n	-1	known	in_frame_del	c.299_297	p.E99in_frame_del	0.531:0.557:0.476	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	133	0	0	88	76	45.78	-	-	-	-	105110527	TCC	-	105110525	7	5	147	1	0	1	0	1	0	0	0	0	11651	1667	58	0	793	0	PCGF6	10	105110525	In_Frame_Del	DEL	TCC	TCGA-A7-A4SD-01A-11D-A25Q-09	19092877	105110525	30424222	30	8535										
PCSK7	0	genome.wustl.edu	37	chr11	117076708	117076708	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgtcccacactgtcaggcccTgaggtcagcagatctgctcc	10	15	3	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-11A-43D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	727808a9-5f85-47b1-ad15-2f6bb5a231dd	11	117076708	117076708	T	C	SNP	PCSK7	ENST00000529458	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PCSK7	HGNC	ENSG00000160613	9	0	0	12	8	40	-	-	-	C	117076708	T	C	117076708	1	2	147	0	1	0	0	0	0	0	0	0	11678	1595	55	5		5	PCSK7	11	117076708	RNA	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09		117076708	17929808	31	8536										
HIST4H4	0	genome.wustl.edu	37	chr12	14923963	14923963	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgtcccgcagcaccttccggTggcgcttggcgcctccctta	11	17	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	12	14923963	14923963	T	A	SNP	HIST4H4	ENST00000358064	human	ensembl	69_37n	-1	known	missense	c.56	p.H19L	1.000	superfamily_Histone-fold,smart_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST4H4	HGNC	ENSG00000197837	45	0	0	71	14	16.47	-	-	-	A	14923963	T	A	14923963	3	1	147	1	0	0	0	0	1	0	0	0	7236	1696	59	5	259	5	HIST4H4	12	14923963	Missense_Mutation	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09		14923963	118927932	32	8537										
CPNE8	0	genome.wustl.edu	37	chr12	39047620	39047620	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gcctggttcattacagagcaCcaggcacaaagcattaactc	8	12	1	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	12	39047620	39047620	C	A	SNP	CPNE8	ENST00000546603	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CPNE8	HGNC	ENSG00000139117	72	0	0	135	24	15.09	-	-	-	A	39047620	C	A	39047620	1	1	147	0	1	0	0	0	0	0	0	0	3848	522	18	4		4	CPNE8	12	39047620	RNA	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	24123657	39047620	94804275	33	8538										
PDE1B	0	genome.wustl.edu	37	chr12	54955324	54955324	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	cttgggggccctggggctccTggggtcaggattttgatact	16	9	1	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-11A-43D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	727808a9-5f85-47b1-ad15-2f6bb5a231dd	12	54955324	54955324	T	C	SNP	PDE1B	ENST00000394277	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE1B	HGNC	ENSG00000123360	42	0	0	71	8	10.13	-	-	-	C	54955324	T	C	54955324	1	2	147	0	1	0	0	0	0	0	0	0	11707	1595	55	5		5	PDE1B	12	54955324	RNA	SNP	T	TCGA-A7-A4SD-01A-11D-A25Q-09	15907704	54955324	78896571	34	8539										
MAB21L1	0	genome.wustl.edu	37	chr13	36049883	36049883	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgagccaccagcgtctgaaaCctggaccggattttgcgcgc	12	13	1	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	13	36049883	36049883	C	T	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	silent	c.393	p.R131	0.992	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	44	0	0	27	17	38.64	-	-	-	T	36049883	C	T	36049883	2	4	147	1	0	0	0	0	0	0	0	1	9208	506	18	4		4	MAB21L1	13	36049883	Silent	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		36049883	79119995	35	8540										
AGBL1	0	genome.wustl.edu	37	chr15	86807904	86807904	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	aatagataagcttctgcagaCacatctgaagcgtgtccctt	8	10	2	3			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	15	86807904	86807904	C	G	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.1364	p.T455R	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	59	0	0	54	19	25.33	-	-	-	G	86807904	C	G	86807904	3	3	147	1	0	0	0	0	1	0	0	0	375	478	17	4	1398	4	AGBL1	15	86807904	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		86807904	15723488	36	8541										
TOX3	0	genome.wustl.edu	37	chr16	52473349	52473349	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gcgctgctgcagctgctgctGcagctgctgttgattaattt	12	10	0	1			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	16	52473349	52473349	G	A	SNP	TOX3	ENST00000219746	human	ensembl	69_37n	-1	known	nonsense	c.1519	p.Q507*	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX3	HGNC	ENSG00000103460	51	0	0	58	11	15.94	-	-	-	A	52473349	G	A	52473349	4	1	147	1	0	0	0	0	0	1	0	0	16475	1328	46	4	215	4	TOX3	16	52473349	Nonsense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09		52473349	37881404	37	8542										
HYDIN	0	genome.wustl.edu	37	chr16	70928402	70928402	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ttcaattgcaggggctgcttCgcctcctctgtgaccctgac	10	14	2	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	16	70928402	70928402	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.9195	p.A3065	0.896	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	38	0	0	41	5	10.87	-	-	-	T	70928402	C	T	70928402	2	4	147	1	0	0	0	0	0	0	0	1	7521	871	31	1		1	HYDIN	16	70928402	Silent	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	18455053	70928402	19426351	38	8543										
BCL6B	0	genome.wustl.edu	37	chr17	6927077	6927077	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gacgtgctgggcaacctcaaCgagctgcgcctgcgcgggat	15	13	1	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	17	6927077	6927077	C	T	SNP	BCL6B	ENST00000293805	human	ensembl	69_37n	1	known	silent	c.87	p.N29	0.634	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940	75	0	0	87	22	20.18	-	-	-	T	6927077	C	T	6927077	2	4	147	1	0	0	0	0	0	0	0	1	1381	535	19	1		1	BCL6B	17	6927077	Silent	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		6927077	74268133	39	8544										
TP53	0	genome.wustl.edu	37	chr17	7577570	7577570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	cccatgcaggaactgttacaCatgtagttgtagtggatggt	12	7	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	17	7577570	7577570	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.711	p.M237I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	83	0	0	51	48	48	-	-	-	T	7577570	C	T	7577570	3	4	147	1	0	0	0	0	1	0	0	0	16477	478	17	4	579	4	TP53	17	7577570	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09	650493	7577570	73617640	40	8545										
CASKIN2	0	genome.wustl.edu	37	chr17	73497206	73497206	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tcagccagggcgtcgaacatGgtgctgatgtcatccagaat	12	10	2	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	17	73497206	73497206	G	A	SNP	CASKIN2	ENST00000321617	human	ensembl	69_37n	-1	known	silent	c.3564	p.T1188	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain	-	no_errors	CASKIN2	HGNC	ENSG00000177303	65	0	0	37	30	44.78	-	-	-	A	73497206	G	A	73497206	2	1	147	1	0	0	0	0	0	0	0	1	2692	1335	47	4		4	CASKIN2	17	73497206	Silent	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	65919636	73497206	7698004	41	8546										
ENGASE	0	genome.wustl.edu	37	chr17	77081765	77081765	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ctcgtttgcttctcacggccGccgggtagtcgggaggagga	16	11	1	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	17	77081765	77081765	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	69_37n	1	known	silent	c.1764	p.P588	0.002	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	79	0	0	75	16	17.58	-	-	-	A	77081765	G	A	77081765	2	1	147	1	0	0	0	0	0	0	0	1	5155	1074	38	1		1	ENGASE	17	77081765	Silent	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	3584559	77081765	4113445	42	8547										
MYO5B	0	genome.wustl.edu	37	chr18	47511089	47511089	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	caactaagaagctccttaccGaggagtgtgaaggcttgtcg	12	9	0	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	18	47511089	47511089	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	silent	c.945	p.L315	0.069	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	65	0	0	77	47	37.9	-	-	-	A	47511089	G	A	47511089	2	1	147	1	0	0	0	0	0	0	0	1	10151	1072	37	1		1	MYO5B	18	47511089	Silent	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09		47511089	30566159	43	8548										
DOCK6	0	genome.wustl.edu	37	chr19	11325067	11325067	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	ccccaagacgctctcccgggCttctgaaagcatcaccgtct	8	17	4	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	19	11325067	11325067	C	A	SNP	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	missense	c.4222	p.A1408S	1.000	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	42	0	0	32	4	11.11	-	-	-	A	11325067	C	A	11325067	3	1	147	1	0	0	0	0	1	0	0	0	4726	797	28	4	1981	4	DOCK6	19	11325067	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		11325067	47803916	44	8549										
GRIN2D	0	genome.wustl.edu	37	chr19	48922957	48922957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	accaccagcaaaatcatggtGctggtgtgggccttcttcgc	11	12	2	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	19	48922957	48922957	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	silent	c.1977	p.V659	0.983	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	61	0	0	114	18	13.64	-	-	-	A	48922957	G	A	48922957	2	1	147	1	0	0	0	0	0	0	0	1	6833	1306	46	4		4	GRIN2D	19	48922957	Silent	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	37597890	48922957	10206026	45	8550										
SLC37A1	0	genome.wustl.edu	37	chr21	43988519	43988519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	gcacgccctctccaccgtgaCggccatcattgacgggacgg	12	16	2	2			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	21	43988519	43988519	C	T	SNP	SLC37A1	ENST00000352133	human	ensembl	69_37n	1	known	missense	c.1394	p.T465M	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190	73	0	0	48	20	29.41	-	-	-	T	43988519	C	T	43988519	3	4	147	1	0	0	0	0	1	0	0	0	14686	536	19	1	1456	1	SLC37A1	21	43988519	Missense_Mutation	SNP	C	TCGA-A7-A4SD-01A-11D-A25Q-09		43988519	4141376	46	8551										
MYO18B	0	genome.wustl.edu	37	chr22	26291146	26291146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	acgagtggcagatgcgcttcGactgtgctcagatggagaac	14	9	1	3			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	22	26291146	26291146	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.4567	p.D1523N	0.987	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	71	0	0	50	29	36.71	-	-	-	A	26291146	G	A	26291146	3	1	147	1	0	0	0	0	1	0	0	0	10138	1058	37	1	4673	1	MYO18B	22	26291146	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09		26291146	25013420	47	8552										
TTC38	0	genome.wustl.edu	37	chr22	46684349	46684349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	tgggccagcggtggcaggatGtcctgcctgtggcccggaag	18	11	0	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	22	46684349	46684349	G	A	SNP	TTC38	ENST00000445282	human	ensembl	69_37n	1	known	missense	c.772	p.V258I	0.046	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	74	0	0	127	28	18.06	-	-	-	A	46684349	G	A	46684349	3	1	147	1	0	0	0	0	1	0	0	0	16803	1377	48	4	988	4	TTC38	22	46684349	Missense_Mutation	SNP	G	TCGA-A7-A4SD-01A-11D-A25Q-09	20393203	46684349	4620217	48	8553										
FLNA	0	genome.wustl.edu	37	chrX	153594795	153594795	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.302270011947431	0	0.313895781637717	1	1	0	acttatccacgtacacctcgAaggggctcttggcgatgtgc	11	12	1	0			TCGA-A7-A4SD-01A-11D-A25Q-09	TCGA-A7-A4SD-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afa9f1e-e155-41ea-9284-baca6943f237	183446dc-6ca8-4d0d-ad38-73b34d833ba4	X	153594795	153594795	A	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.1109	p.F370Y	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	112	0	0	160	60	27.27	-	-	-	T	153594795	A	T	153594795	3	4	147	1	0	0	0	0	1	0	0	0	5979	246	9	5	6998	5	FLNA	23	153594795	Missense_Mutation	SNP	A	TCGA-A7-A4SD-01A-11D-A25Q-09		153594795	1675765	49	8554										
TAS1R2	0	genome.wustl.edu	37	chr1	19166499	19166499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	catcggggtcagtacgggtgGtgggactgaggcccgtggcc	19	10	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	19166499	19166499	G	C	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	missense	c.2114	p.T705S	0.974	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	86	0	0	69	35	33.65	-	-	-	C	19166499	G	C	19166499	3	2	148	1	0	0	0	0	1	0	0	0	15655	1261	44	4	409	4	TAS1R2	1	19166499	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		19166499	230084122	1	8555										
SFPQ	0	genome.wustl.edu	37	chr1	35658567	35658567	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggcggagaacggaagtcgtgGaggccgccgcggccgccgcc	19	14	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	35658567	35658567	G	T	SNP	SFPQ	ENST00000357214	human	ensembl	69_37n	-1	known	silent	c.84	p.L28	0.985	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560	15	0	0	15	11	42.31	-	-	-	T	35658567	G	T	35658567	2	4	148	1	0	0	0	0	0	0	0	1	14248	1161	41	2		2	SFPQ	1	35658567	Silent	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	16492068	35658567	213592054	2	8556										
CCBL2	0	genome.wustl.edu	37	chr1	89426969	89426969	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gcagttcctctctgttatacAcctacacataataaaggaaa	5	10	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	89426969	89426969	A	T	SNP	CCBL2	ENST00000260508	human	ensembl	69_37n	-1	known	missense	c.668	p.V223E	0.999	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CCBL2	HGNC	ENSG00000137944	40	0	0	60	29	32.22	-	-	-	T	89426969	A	T	89426969	3	4	148	1	0	0	0	0	1	0	0	0	2758	173	6	5	724	5	CCBL2	1	89426969	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	53768402	89426969	159823652	3	8557										
PRUNE	0	genome.wustl.edu	37	chr1	150997190	150997190	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tttcagttgagctggtggggTcctgtgctaccctggtgacc	14	10	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	150997190	150997190	T	G	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	1	known	missense	c.439	p.S147A	1.000	pfam_Pesterase_RecJ	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	50	0	0	48	42	46.67	-	-	-	G	150997190	T	G	150997190	3	3	148	1	0	0	0	0	1	0	0	0	12720	1667	58	5	453	5	PRUNE	1	150997190	Missense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	61570221	150997190	98253431	4	8558										
FLG2	0	genome.wustl.edu	37	chr1	152329692	152329692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tgtctgtctttgccaccactCcatgaatgaccacagctgga	8	13	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	152329692	152329692	C	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.570	p.W190C	0.945	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	77	0	0	202	42	17.21	-	-	-	G	152329692	C	G	152329692	3	3	148	1	0	0	0	0	1	0	0	0	5969	856	30	2	6609	2	FLG2	1	152329692	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1332502	152329692	96920929	5	8559										
SPTA1	0	genome.wustl.edu	37	chr1	158592829	158592829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tctgtggactgccgaggcttCcagcaactgttcccagcgct	11	14	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	158592829	158592829	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6064	p.E2022K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	40	0	0	19	27	57.45	-	-	-	T	158592829	C	T	158592829	3	4	148	1	0	0	0	0	1	0	0	0	15207	864	30	2	1235	2	SPTA1	1	158592829	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	6263137	158592829	90657792	6	8560										
CCDC19	0	genome.wustl.edu	37	chr1	159843016	159843016	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	agctggcccaggccaggaaaGgtggtgggggagcctcctgg	19	10	0	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	159843016	159843016	G	C	SNP	CCDC19	ENST00000479861	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC19	HGNC	ENSG00000213085	15	0	0	41	8	16.33	-	-	-	C	159843016	G	C	159843016	1	2	148	0	1	0	0	0	0	0	0	0	2821	1015	35	4		4	CCDC19	1	159843016	RNA	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	1250187	159843016	89407605	7	8561										
ABCB10	0	genome.wustl.edu	37	chr1	229676430	229676430	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gtccactttgctggcatattTctcgatttcagtcatttctt	6	10	4	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	1	229676430	229676430	T	C	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.1126	p.K376E	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	59	0	0	96	21	17.95	-	-	-	C	229676430	T	C	229676430	3	2	148	1	0	0	0	0	1	0	0	0	41	1792	62	5	1126	5	ABCB10	1	229676430	Missense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	69833414	229676430	19574191	8	8562										
SLC4A5	0	genome.wustl.edu	37	chr2	74459643	74459643	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ccaggggcactggtctctgtCtccatcttgaggctgtcgat	12	12	3	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	74459643	74459643	C	G	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.2727	p.E909D	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	31	0	0	36	8	18.18	-	-	-	G	74459643	C	G	74459643	3	3	148	1	0	0	0	0	1	0	0	0	14746	912	32	2	718	2	SLC4A5	2	74459643	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		74459643	168739730	9	8563										
ACTR1B	0	genome.wustl.edu	37	chr2	98274896	98274896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tcgccccttgtcacctctttGattgtccggacaacctcaaa	6	15	3	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	98274896	98274896	G	C	SNP	ACTR1B	ENST00000289228	human	ensembl	69_37n	-1	known	missense	c.651	p.I217M	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1B	HGNC	ENSG00000115073	61	0	0	89	19	17.59	-	-	-	C	98274896	G	C	98274896	3	2	148	1	0	0	0	0	1	0	0	0	210	1280	45	2	503	2	ACTR1B	2	98274896	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	23815253	98274896	144924477	10	8564										
BAZ2B	0	genome.wustl.edu	37	chr2	160318652	160318652	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	taggatagatctctctctccAacattaaatgtggcagaatt	7	8	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	160318652	160318652	A	C	SNP	BAZ2B	ENST00000483316	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	8	0	0	6	8	57.14	-	-	-	C	160318652	A	C	160318652	1	2	148	0	1	0	0	0	0	0	0	0	1336	145	5	5		5	BAZ2B	2	160318652	RNA	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	62043756	160318652	82880721	11	8565										
TANK	0	genome.wustl.edu	37	chr2	162087687	162087687	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tttccacctatggacaatgaCtcaactttcttacatagcac	4	12	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	2	162087687	162087687	C	G	SNP	TANK	ENST00000259075	human	ensembl	69_37n	1	known	missense	c.726	p.D242E	1.000	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560	15	0	0	16	6	27.27	-	-	-	G	162087687	C	G	162087687	3	3	148	1	0	0	0	0	1	0	0	0	15638	564	20	4	781	4	TANK	2	162087687	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1769035	162087687	81111686	12	8566										
COL3A1	0	genome.wustl.edu	37	chr2	189849533	189849533	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gtcagtcctatgcggatagaGatgtctggaagccagaacca	12	9	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	189849533	189849533	G	C	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.127	p.D43H	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	35	0	0	45	10	18.18	-	-	-	C	189849533	G	C	189849533	3	2	148	1	0	0	0	0	1	0	0	0	3718	942	33	2	133	2	COL3A1	2	189849533	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	27761846	189849533	53349840	13	8567										
COL3A1	0	genome.wustl.edu	37	chr2	189854152	189854152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gacctcctggtgctataggtCcatctggtcctgctggaaaa	11	11	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	189854152	189854152	C	T	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.667	p.P223S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	35	0	0	20	6	23.08	-	-	-	T	189854152	C	T	189854152	3	4	148	1	0	0	0	0	1	0	0	0	3718	855	30	2	697	2	COL3A1	2	189854152	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	4619	189854152	53345221	14	8568										
DYTN	0	genome.wustl.edu	37	chr2	207564451	207564451	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	aatgctgctgatgactgtacCtgagtcccgtgattgggaaa	12	8	0	4			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	207564451	207564451	C	A	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	missense	c.719	p.R240I	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	28	0	0	22	15	40.54	-	-	-	A	207564451	C	A	207564451	3	1	148	1	0	0	0	0	1	0	0	0	4896	695	24	4	1041	4	DYTN	2	207564451	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	17710299	207564451	35634922	15	8569										
CPS1	0	genome.wustl.edu	37	chr2	211481258	211481258	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tggaaaagacactgaaaggcCtcaacaggtaaggcagtgct	12	8	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	2	211481258	211481258	C	G	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.2698	p.L900V	0.969	pfam_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_lsu_oligo,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	28	0	0	45	9	16.67	-	-	-	G	211481258	C	G	211481258	3	3	148	1	0	0	0	0	1	0	0	0	3853	681	24	4	2784	4	CPS1	2	211481258	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	3916807	211481258	31718115	16	8570										
CNTN6	0	genome.wustl.edu	37	chr3	1427412	1427412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ataccatctactttgcttccGtaagagcttacaacactgct	5	12	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	3	1427412	1427412	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.2635	p.V879I	0.977	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	46	0	0	71	34	32.38	-	-	-	A	1427412	G	A	1427412	3	1	148	1	0	0	0	0	1	0	0	0	3675	1145	40	1	2709	1	CNTN6	3	1427412	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		1427412	196595018	17	8571										
GATA2	0	genome.wustl.edu	37	chr3	128199595	128199595	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctgtcccgtcccctccttttCtctacataaagttgtccttg	5	15	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	3	128199595	128199595	C	G	SNP	GATA2	ENST00000489987	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GATA2	HGNC	ENSG00000179348	45	0	0	71	10	12.35	-	-	-	G	128199595	C	G	128199595	1	3	148	0	1	0	0	0	0	0	0	0	6304	928	32	2		2	GATA2	3	128199595	RNA	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	126772183	128199595	69822835	18	8572										
CLDN18	0	genome.wustl.edu	37	chr3	137717874	137717874	+	Missense_Mutation	SNP	G	G	T													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gctgtggcgctcctgtgtccGagagagctctggcttcaccg							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	3	137717874	137717874	G	T	SNP	CLDN18	ENST00000343735	human	ensembl	69_37n	1	known	missense	c.164	p.R55L	0.996	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405	50	0	0	96	45	31.69	-	-	-	T	137717874	G	T	137717874	3	4	148	1	0	0	0	0	1	0	0	0	3509	1058	37	3	166	3	CLDN18	3	137717874	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	9518279	137717874	60304556	19	8573	65	2								
CLDN18	0	genome.wustl.edu	37	chr3	137717875	137717875	+	Silent	SNP	A	A	T													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctgtggcgctcctgtgtccgAgagagctctggcttcaccga							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	3	137717875	137717875	A	T	SNP	CLDN18	ENST00000343735	human	ensembl	69_37n	1	known	silent	c.165	p.R55	0.987	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405	50	0	0	97	45	31.69	-	-	-	T	137717875	A	T	137717875	2	4	148	1	0	0	0	0	0	0	0	1	3509	291	11	5		5	CLDN18	3	137717875	Silent	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	1	137717875	60304555	20	8574	65	2								
XRN1	0	genome.wustl.edu	37	chr3	142095339	142095339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	actttctcctagatcctcttCcaataaaaatacttcctgta	2	12	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	3	142095339	142095339	C	G	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.2813	p.G938A	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	50	0	0	70	11	13.58	-	-	-	G	142095339	C	G	142095339	3	3	148	1	0	0	0	0	1	0	0	0	17556	855	30	2	2383	2	XRN1	3	142095339	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	4377464	142095339	55927091	21	8575										
GPR125	0	genome.wustl.edu	37	chr4	22439915	22439915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tgtttaccaccctctctggaGgacagtactgtgcagaactc	9	12	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	4	22439915	22439915	G	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.1049	p.P350L	1.000	pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	37	0	0	64	12	15.79	-	-	-	A	22439915	G	A	22439915	3	1	148	1	0	0	0	0	1	0	0	0	6689	1000	35	4	2964	4	GPR125	4	22439915	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		22439915	168714361	22	8576										
LNX1	0	genome.wustl.edu	37	chr4	54327695	54327695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	attcttcataacctcctacaAtgcagaagcccagacttcca	4	14	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	4	54327695	54327695	A	G	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.1958	p.I653T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	32	0	0	46	12	20.69	-	-	-	G	54327695	A	G	54327695	3	3	148	1	0	0	0	0	1	0	0	0	8921	101	4	5	236	5	LNX1	4	54327695	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	31887780	54327695	136826581	23	8577										
ENC1	0	genome.wustl.edu	37	chr5	73931271	73931271	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ccccattttcagacccccgcCccccagtaatgtacactttg	5	18	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	5	73931271	73931271	C	A	SNP	ENC1	ENST00000302351	human	ensembl	69_37n	-1	known	missense	c.1040	p.G347V	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617	15	0	0	2	8	80	-	-	-	A	73931271	C	A	73931271	3	1	148	1	0	0	0	0	1	0	0	0	5150	623	22	4	733	4	ENC1	5	73931271	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		73931271	106983989	24	8578										
SH3TC2	0	genome.wustl.edu	37	chr5	148421116	148421116	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	aactcattcttgcaaagtgtCaagcattccccttccttctc	4	14	4	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	5	148421116	148421116	C	T	SNP	SH3TC2	ENST00000515425	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	0.374	superfamily_SH3_domain	pfam_SH3_domain,pfam_TPR-1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247	34	0	0	40	5	11.11	-	-	-	T	148421116	C	T	148421116	2	4	148	1	0	0	0	0	0	0	0	1	14351	825	29	2		2	SH3TC2	5	148421116	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	74489845	148421116	32494144	25	8579										
C5orf54	0	genome.wustl.edu	37	chr5	159821012	159821012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gccactagctcgtaattcagCaagatcatttttcattaaat	5	9	3	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	5	159821012	159821012	C	T	SNP	C5orf54	ENST00000408953	human	ensembl	69_37n	-1	known	missense	c.1486	p.A496T	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	C5orf54	HGNC	ENSG00000221886	31	0	0	21	25	53.19	-	-	-	T	159821012	C	T	159821012	3	4	148	1	0	0	0	0	1	0	0	0	2331	710	25	4	302	4	C5orf54	5	159821012	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	11399896	159821012	21094248	26	8580										
RASGEF1C	0	genome.wustl.edu	37	chr5	179528345	179528345	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggtctcctgtgcccgtatggCcactgtgggggggggggggg	22	9	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	5	179528345	179528345	C	G	SNP	RASGEF1C	ENST00000519456	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	34	0	0	30	7	18.92	-	-	-	G	179528345	C	G	179528345	1	3	148	0	1	0	0	0	0	0	0	0	13154	754	26	4		4	RASGEF1C	5	179528345	RNA	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	19707333	179528345	1386915	27	8581										
DSP	0	genome.wustl.edu	37	chr6	7583868	7583868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gagaaaccggaatgcgcctgCtggaagcccagattgcttca	12	11	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	6	7583868	7583868	C	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	silent	c.6373	p.L2125	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	38	0	0	30	5	14.29	-	-	-	T	7583868	C	T	7583868	2	4	148	1	0	0	0	0	0	0	0	1	4816	796	28	4		4	DSP	6	7583868	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		7583868	163531199	28	8582										
PHF1	0	genome.wustl.edu	37	chr6	33382315	33382315	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctctgctcttaacagccacaAggaccggtgagttggaggga	13	10	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	33382315	33382315	A	G	SNP	PHF1	ENST00000374516	human	ensembl	69_37n	1	known	missense	c.938	p.K313R	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF1	HGNC	ENSG00000112511	44	0	0	83	14	14.43	-	-	-	G	33382315	A	G	33382315	3	3	148	1	0	0	0	0	1	0	0	0	11894	72	3	5	972	5	PHF1	6	33382315	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	25798447	33382315	137732752	29	8583										
LEMD2	0	genome.wustl.edu	37	chr6	33747884	33747884	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tgcccacactcaccagatgcCcacgtccttgttactgctca	6	17	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	33747884	33747884	C	T	SNP	LEMD2	ENST00000442696	human	ensembl	69_37n	-1	novel	nonsense	c.600	p.W200*	1.000	pfam_Inner-Nucl-membr_MAN1	pfam_Inner-Nucl-membr_MAN1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LEMD2	HGNC	ENSG00000161904	102	0	0	229	34	12.88	-	-	-	T	33747884	C	T	33747884	4	4	148	1	0	0	0	0	0	1	0	0	8774	623	22	4	528	4	LEMD2	6	33747884	Nonsense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	365569	33747884	137367183	30	8584										
PKHD1	0	genome.wustl.edu	37	chr6	51776625	51776625	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gcattggcctcctggcatgaAacaagcagcttctccctctc	8	15	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	51776625	51776625	A	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.6462	p.V2154	0.009	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	31	0	0	26	19	42.22	-	-	-	T	51776625	A	T	51776625	2	4	148	1	0	0	0	0	0	0	0	1	12045	1	1	5		5	PKHD1	6	51776625	Silent	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	18028741	51776625	119338442	31	8585										
LRRC1	0	genome.wustl.edu	37	chr6	53784344	53784344	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gccttgaagttgaaggctctGtggctatctgacaaccagtc	11	10	2	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	53784344	53784344	G	A	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	silent	c.1155	p.L385	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	55	0	0	45	19	29.69	-	-	-	A	53784344	G	A	53784344	2	1	148	1	0	0	0	0	0	0	0	1	9032	1364	48	4		4	LRRC1	6	53784344	Silent	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	2007719	53784344	117330723	32	8586										
MCM9	0	genome.wustl.edu	37	chr6	119136169	119136169	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	aggaggggagcttgggcctcTctcacctcggttcttccttt	12	12	3	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	119136169	119136169	T	G	SNP	MCM9	ENST00000316316	human	ensembl	69_37n	-1	known	silent	c.3250	p.R1084	0.004	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	39	0	0	38	19	33.33	-	-	-	G	119136169	T	G	119136169	2	3	148	1	0	0	0	0	0	0	0	1	9465	1566	54	5		5	MCM9	6	119136169	Silent	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	65351825	119136169	51978898	33	8587										
ALDH8A1	0	genome.wustl.edu	37	chr6	135271075	135271075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tcgtcttttccactatttggCactctgcaatacacttcccc	4	15	2	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	6	135271075	135271075	C	T	SNP	ALDH8A1	ENST00000265605	human	ensembl	69_37n	-1	known	silent	c.117	p.V39	0.140	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514	32	0	0	69	22	24.18	-	-	-	T	135271075	C	T	135271075	2	4	148	1	0	0	0	0	0	0	0	1	505	697	25	4		4	ALDH8A1	6	135271075	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	16134906	135271075	35843992	34	8588										
ETV1	0	genome.wustl.edu	37	chr7	13940403	13940403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	catagtaatagcggagtgaaCggctaagtttatcatagttc	10	6	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	7	13940403	13940403	C	A	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	missense	c.1172	p.R391L	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	97	0	0	43	32	42.67	-	-	-	A	13940403	C	A	13940403	3	1	148	1	0	0	0	0	1	0	0	0	5314	536	19	3	269	3	ETV1	7	13940403	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		13940403	145198260	35	8589										
TMEM140	0	genome.wustl.edu	37	chr7	134849503	134849503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ccccccagcctctcctcctaGcccagtgcaacagtgatgag	8	18	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	7	134849503	134849503	G	C	SNP	TMEM140	ENST00000275767	human	ensembl	69_37n	1	known	missense	c.310	p.A104P	0.977	NULL	NULL	-	no_errors	TMEM140	HGNC	ENSG00000146859	60	0	0	18	50	73.53	-	-	-	C	134849503	G	C	134849503	3	2	148	1	0	0	0	0	1	0	0	0	16150	971	34	4	312	4	TMEM140	7	134849503	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	120909100	134849503	24289160	36	8590										
MGAM	0	genome.wustl.edu	37	chr7	141738387	141738387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	acagttcttatgggggcccgGcctcctcatcactccagttc	9	15	3	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	7	141738387	141738387	G	A	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.2288	p.G763D	0.279	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	25	0	0	14	23	62.16	-	-	-	A	141738387	G	A	141738387	3	1	148	1	0	0	0	0	1	0	0	0	9612	1203	42	4	2358	4	MGAM	7	141738387	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	6888884	141738387	17400276	37	8591										
MGAM	0	genome.wustl.edu	37	chr7	141794453	141794453	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cagcctcttcggcatatcctAtgtgagtgtccttgggatcc	10	12	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	7	141794453	141794453	A	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.4652	p.Y1551F	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	62	0	0	98	15	13.27	-	-	-	T	141794453	A	T	141794453	3	4	148	1	0	0	0	0	1	0	0	0	9612	463	16	5	4802	5	MGAM	7	141794453	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	56066	141794453	17344210	38	8592										
TNFRSF10D	0	genome.wustl.edu	37	chr8	23005964	23005965	+	Frame_Shift_Del	DEL	TG	TG	-													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tctgtacctgatttacaaacTgtacatagcaggcaagaagg							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	8	23005964	23005965	TG	-	DEL	TNFRSF10D	ENST00000312584	human	ensembl	69_37n	-1	known	frame_shift_del	c.357_356	p.T119fs	0.000:0.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10	-	no_errors	TNFRSF10D	HGNC	ENSG00000173530	31	0	0	41	25	36.23	-	-	-	-	23005965	TG	-	23005964	7	5	148	1	0	1	0	1	0	0	0	0	16378	1567	55	0	831	0	TNFRSF10D	8	23005964	Frame_Shift_Del	DEL	TG	TCGA-A7-A4SE-01A-11D-A25Q-09		23005964	123358058	39	8593										
PMP2	0	genome.wustl.edu	37	chr8	82359614	82359614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tccaggtgcccaggaatttgTtgctcatcgtgatgggtgag	14	8	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	8	82359614	82359614	T	C	SNP	PMP2	ENST00000256103	human	ensembl	69_37n	-1	known	missense	c.8	p.N3S	1.000	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	PMP2	HGNC	ENSG00000147588	30	0	0	51	11	17.74	-	-	-	C	82359614	T	C	82359614	3	2	148	1	0	0	0	0	1	0	0	0	12212	1725	60	5	406	5	PMP2	8	82359614	Missense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	59353650	82359614	64004408	40	8594										
ZFPM2	0	genome.wustl.edu	37	chr8	106815176	106815176	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctcagctcattgctacaaaaGaagaaaacagacatttgttt	6	8	2	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	8	106815176	106815176	G	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	nonsense	c.2866	p.E956*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	19	0	0	28	9	24.32	-	-	-	T	106815176	G	T	106815176	4	4	148	1	0	0	0	0	0	1	0	0	17754	943	33	2	2896	2	ZFPM2	8	106815176	Nonsense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	24455562	106815176	39548846	41	8595										
RECQL4	0	genome.wustl.edu	37	chr8	145738069	145738069	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gcagggcccccagggcagttCagacggcaatgggtataggt	16	10	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	8	145738069	145738069	C	G	SNP	RECQL4	ENST00000301323	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RECQL4	HGNC	ENSG00000160957	25	0	0	30	13	30.23	-	-	-	G	145738069	C	G	145738069	1	3	148	0	1	0	0	0	0	0	0	0	13285	813	29	2		2	RECQL4	8	145738069	RNA	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	38922893	145738069	625953	42	8596										
TYRP1	0	genome.wustl.edu	37	chr9	12708043	12708043	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gcccctattggacataatagAcaatacaacatggtgccatt	7	10	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	9	12708043	12708043	A	G	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	silent	c.1308	p.R436	0.996	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	37	0	0	73	20	21.51	-	-	-	G	12708043	A	G	12708043	2	3	148	1	0	0	0	0	0	0	0	1	16913	272	10	5		5	TYRP1	9	12708043	Silent	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09		12708043	128505388	43	8597										
PTCH1	0	genome.wustl.edu	37	chr9	98238441	98238441	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	caggcactccccggtcctgtCctgggaataaaaaaacacag	9	13	0	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	9	98238441	98238441	C	A	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.1603	p.D535Y	1.000	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	18	0	0	10	14	58.33	-	-	-	A	98238441	C	A	98238441	3	1	148	1	0	0	0	0	1	0	0	0	12810	869	30	2	2788	2	PTCH1	9	98238441	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	85530398	98238441	42974990	44	8598										
ZNF462	0	genome.wustl.edu	37	chr9	109686591	109686591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cactagaaaggtccatggagCtcaagctgaagggagttcat	12	8	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	9	109686591	109686591	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.398	p.A133V	0.996	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	28	0	0	17	13	43.33	-	-	-	T	109686591	C	T	109686591	3	4	148	1	0	0	0	0	1	0	0	0	18022	797	28	4	404	4	ZNF462	9	109686591	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	11448150	109686591	31526840	45	8599										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112898773	112898773	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cagagcctggtgcagtggttCtggtgggcggcctaagcccc	16	12	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	9	112898773	112898773	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	silent	c.949	p.L317	0.005	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	40	0	0	38	21	35.59	-	-	-	T	112898773	C	T	112898773	2	4	148	1	0	0	0	0	0	0	0	1	11483	912	32	2		2	PALM2-AKAP2	9	112898773	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	3212182	112898773	28314658	46	8600										
FAM69B	0	genome.wustl.edu	37	chr9	139616392	139616392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gtgtgaccagtaccgcaaggGgatcatctcgggctccgtct	13	12	3	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	9	139616392	139616392	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	69_37n	1	known	missense	c.218	p.G73E	1.000	NULL	pfam_Uncharacterised_FAM69	-	no_errors	FAM69B	HGNC	ENSG00000165716	182	1	0.55	78	124	60.78	-	-	-	A	139616392	G	A	139616392	3	1	148	1	0	0	0	0	1	0	0	0	5648	1232	43	4	228	4	FAM69B	9	139616392	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	26717619	139616392	1597039	47	8601										
PLXDC2	0	genome.wustl.edu	37	chr10	20534365	20534365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	atcctggtcctcattgtagcCacagccattcttgtgacagt	8	12	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	10	20534365	20534365	C	T	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	silent	c.1404	p.A468	0.173	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	78	0	0	62	51	45.13	-	-	-	T	20534365	C	T	20534365	2	4	148	1	0	0	0	0	0	0	0	1	12192	581	21	4		4	PLXDC2	10	20534365	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		20534365	115000382	48	8602										
RET	0	genome.wustl.edu	37	chr10	43619204	43619204	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctcctgagcggctcttcaacCttctgaagaccggccaccgg	10	16	3	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	10	43619204	43619204	C	G	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.2887	p.L963V	1.000	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	47	0	0	49	11	18.33	-	-	-	G	43619204	C	G	43619204	3	3	148	1	0	0	0	0	1	0	0	0	13318	681	24	4	2953	4	RET	10	43619204	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	23084839	43619204	91915543	49	8603										
MAT1A	0	genome.wustl.edu	37	chr10	82034939	82034939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ccacaataatcttacggccaGtgacacccgcatccccctgc	6	18	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	10	82034939	82034939	G	T	SNP	MAT1A	ENST00000372206	human	ensembl	69_37n	-1	known	missense	c.785	p.T262N	1.000	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT1A	HGNC	ENSG00000151224	39	0	0	35	11	23.91	-	-	-	T	82034939	G	T	82034939	3	4	148	1	0	0	0	0	1	0	0	0	9400	1029	36	4	414	4	MAT1A	10	82034939	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	38415735	82034939	53499808	50	8604										
TRPM5	0	genome.wustl.edu	37	chr11	2434134	2434134	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tacatgaccacgttccccagGaacacagtcacgggagcgcc	10	15	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	2434134	2434134	G	C	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2211	p.F737L	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	31	0	0	53	6	10.17	-	-	-	C	2434134	G	C	2434134	3	2	148	1	0	0	0	0	1	0	0	0	16685	1165	41	2	1332	2	TRPM5	11	2434134	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		2434134	132572382	51	8605										
OR52W1	0	genome.wustl.edu	37	chr11	6221358	6221358	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cctcatctatggggcccgcaCcaagcagatcagagaccgac	10	15	3	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	6221358	6221358	C	A	SNP	OR52W1	ENST00000311352	human	ensembl	69_37n	1	known	missense	c.905	p.T302N	0.998	prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485	49	0	0	56	21	27.27	-	-	-	A	6221358	C	A	6221358	3	1	148	1	0	0	0	0	1	0	0	0	11205	507	18	4	907	4	OR52W1	11	6221358	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	3787224	6221358	128785158	52	8606										
RIC3	0	genome.wustl.edu	37	chr11	8148332	8148332	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tagcaaccgtttctcttggtCagaagtcacagtctgtgctc	9	11	4	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	8148332	8148332	C	T	SNP	RIC3	ENST00000309737	human	ensembl	69_37n	-1	known	missense	c.544	p.D182N	1.000	NULL	NULL	-	no_errors	RIC3	HGNC	ENSG00000166405	46	0	0	20	29	59.18	-	-	-	T	8148332	C	T	8148332	3	4	148	1	0	0	0	0	1	0	0	0	13438	826	29	2	573	2	RIC3	11	8148332	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1926974	8148332	126858184	53	8607										
LGALS12	0	genome.wustl.edu	37	chr11	63279229	63279229	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cccttgttccttcaggaggtGccctgctcacatgctcttcc	8	16	3	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	63279229	63279229	G	T	SNP	LGALS12	ENST00000340246	human	ensembl	69_37n	1	known	silent	c.633	p.V211	0.982	superfamily_ConA-like_lec_gl	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS12	HGNC	ENSG00000133317	39	0	0	44	11	20	-	-	-	T	63279229	G	T	63279229	2	4	148	1	0	0	0	0	0	0	0	1	8793	1306	46	4		4	LGALS12	11	63279229	Silent	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	55130897	63279229	71727287	54	8608										
RTN3	0	genome.wustl.edu	37	chr11	63487409	63487409	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tacctgatgaccacctgaaaGatgaaatggactggcagagc	11	9	0	6			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	63487409	63487409	G	C	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	missense	c.1435	p.D479H	0.162	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	34	0	0	49	21	29.58	-	-	-	C	63487409	G	C	63487409	3	2	148	1	0	0	0	0	1	0	0	0	13813	942	33	2	1445	2	RTN3	11	63487409	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	208180	63487409	71519107	55	8609										
APOA1	0	genome.wustl.edu	37	chr11	116708076	116708076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cctacccgtcaggaagagcaCggccaaggtcagcaccgcag	12	15	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	116708076	116708076	C	T	SNP	APOA1	ENST00000236850	human	ensembl	69_37n	-1	known	missense	c.28	p.V10M	0.934	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137	54	0	0	40	19	32.2	-	-	-	T	116708076	C	T	116708076	3	4	148	1	0	0	0	0	1	0	0	0	782	536	19	1	787	1	APOA1	11	116708076	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	53220667	116708076	18298440	56	8610										
ROBO3	0	genome.wustl.edu	37	chr11	124748259	124748259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tgccctctctgaactggccaGaagccctgcccccacctcct	7	20	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	11	124748259	124748259	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.3247	p.E1083K	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	27	0	0	6	11	64.71	-	-	-	A	124748259	G	A	124748259	3	1	148	1	0	0	0	0	1	0	0	0	13601	943	33	2	3333	2	ROBO3	11	124748259	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	8040183	124748259	10258257	57	8611										
GDF3	0	genome.wustl.edu	37	chr12	7842582	7842582	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggagacagcttggtggggatAcacacagcctgggggatctc	16	9	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	12	7842582	7842582	A	G	SNP	GDF3	ENST00000329913	human	ensembl	69_37n	-1	known	silent	c.987	p.C329	0.663	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344	50	0	0	40	24	36.92	-	-	-	G	7842582	A	G	7842582	2	3	148	1	0	0	0	0	0	0	0	1	6367	389	14	5		5	GDF3	12	7842582	Silent	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09		7842582	126009313	58	8612										
SLC4A8	0	genome.wustl.edu	37	chr12	51888749	51888749	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ttctttgatcgtctaaagctCtttgggatgcccgcaaagca	9	10	3	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	12	51888749	51888749	C	G	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	silent	c.2790	p.L930	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	58	0	0	70	16	18.6	-	-	-	G	51888749	C	G	51888749	2	3	148	1	0	0	0	0	0	0	0	1	14748	900	32	2		2	SLC4A8	12	51888749	Silent	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	44046167	51888749	81963146	59	8613										
NT5DC3	0	genome.wustl.edu	37	chr12	104174077	104174077	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ttcaatacaggcctctcttaCcgcatctccttcctttcctt	3	16	3	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	12	104174077	104174077	C	G	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	splice_site	c.1394+1	e13+1	1.000	-	-	-	no_errors	NT5DC3	HGNC	ENSG00000111696	70	0	0	40	49	55.06	-	-	-	G	104174077	C	G	104174077	5	3	148	1	0	0	0	0	0	0	1	0	10765	521	18	4	259	4	NT5DC3	12	104174077	Splice_Site	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	52285328	104174077	29677818	60	8614										
MIPEP	0	genome.wustl.edu	37	chr13	24411757	24411757	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	atgtcccatttcatggaaaaGattttccatcatgctaggag	8	8	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	13	24411757	24411757	G	C	SNP	MIPEP	ENST00000382172	human	ensembl	69_37n	-1	known	missense	c.1477	p.L493V	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001	40	0	0	29	16	35.56	-	-	-	C	24411757	G	C	24411757	3	2	148	1	0	0	0	0	1	0	0	0	9663	942	33	2	692	2	MIPEP	13	24411757	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		24411757	90758121	61	8615										
DGKH	0	genome.wustl.edu	37	chr13	42748218	42748218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggagtataatgacatatgaaCtcaaattgccaccaaaagct	7	8	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	13	42748218	42748218	C	T	SNP	DGKH	ENST00000337343	human	ensembl	69_37n	1	known	missense	c.1390	p.L464F	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	49	0	0	21	4	16	-	-	-	T	42748218	C	T	42748218	3	4	148	1	0	0	0	0	1	0	0	0	4506	565	20	4	1436	4	DGKH	13	42748218	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	18336461	42748218	72421660	62	8616										
OR11G2	0	genome.wustl.edu	37	chr14	20665929	20665929	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ttctactttttcttctccttGggctctacagaatgcttttt	5	10	4	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	14	20665929	20665929	G	C	SNP	OR11G2	ENST00000357366	human	ensembl	69_37n	1	known	missense	c.435	p.L145F	0.974	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	50	0	0	42	27	39.13	-	-	-	C	20665929	G	C	20665929	3	2	148	1	0	0	0	0	1	0	0	0	10998	1339	47	4	437	4	OR11G2	14	20665929	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		20665929	86683611	63	8617										
ARHGAP5	0	genome.wustl.edu	37	chr14	32561632	32561632	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggatcatggccgcttaagatTatatcacgatagtaccaata	8	8	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	14	32561632	32561632	T	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	nonsense	c.1757	p.L586*	0.986	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	27	0	0	16	15	48.39	-	-	-	A	32561632	T	A	32561632	4	1	148	1	0	0	0	0	0	1	0	0	888	1764	61	5	1759	5	ARHGAP5	14	32561632	Nonsense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	11895703	32561632	74787908	64	8618										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562165	32562165	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ttaaacacaatttggatgtgGtgagcccaattcctgccaat	8	9	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	14	32562165	32562165	G	C	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.2290	p.V764L	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	22	0	0	11	19	63.33	-	-	-	C	32562165	G	C	32562165	3	2	148	1	0	0	0	0	1	0	0	0	888	1261	44	4	2292	4	ARHGAP5	14	32562165	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	533	32562165	74787375	65	8619										
UBE3A	0	genome.wustl.edu	37	chr15	25585358	25585358	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gttcatctgtaaatgaatgaAcgatttcccagaactcccta	6	10	2	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	15	25585358	25585358	A	T	SNP	UBE3A	ENST00000397954	human	ensembl	69_37n	-1	known	missense	c.2381	p.V794D	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	35	0	0	34	8	19.05	-	-	-	T	25585358	A	T	25585358	3	4	148	1	0	0	0	0	1	0	0	0	16976	43	2	5	254	5	UBE3A	15	25585358	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09		25585358	76946034	66	8620										
ALPK3	0	genome.wustl.edu	37	chr15	85402487	85402487	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ctctcagccccacaggtgatCcggaagattcgggtggagca	13	12	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	15	85402487	85402487	C	G	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.4437	p.I1479M	0.931	pfscan_Ig-like	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	65	0	0	45	62	57.41	-	-	-	G	85402487	C	G	85402487	3	3	148	1	0	0	0	0	1	0	0	0	546	845	30	2	4463	2	ALPK3	15	85402487	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	59817129	85402487	17128905	67	8621										
AGBL1	0	genome.wustl.edu	37	chr15	86791010	86791010	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	cgcctacgtgcagatccgacGgggcttgctgctctgcctca	12	15	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	15	86791010	86791010	G	C	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.497	p.R166P	0.809	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	62	0	0	57	11	16.18	-	-	-	C	86791010	G	C	86791010	3	2	148	1	0	0	0	0	1	0	0	0	375	1116	39	3	515	3	AGBL1	15	86791010	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	1388523	86791010	15740382	68	8622										
SYNM	0	genome.wustl.edu	37	chr15	99670771	99670771	+	Frame_Shift_Del	DEL	G	G	-													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tcatcaacctcggcctgaaaGggagggaggggagagcaaag							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	15	99670771	99670771	G	-	DEL	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	frame_shift_del	c.2203	p.R736fs	0.998	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	23	0	0	10	33	71.74	-	-	-	-	99670771	G	-	99670771	7	5	148	1	0	1	0	1	0	0	0	0	15547	1000	35	0	2219	0	SYNM	15	99670771	Frame_Shift_Del	DEL	G	TCGA-A7-A4SE-01A-11D-A25Q-09	12879761	99670771	2860621	69	8623										
SMG6	0	genome.wustl.edu	37	chr17	1990895	1990895	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	agccccttgagcttggggtgCctggtcctgggcttgcctcc	14	14	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	1990895	1990895	C	T	SNP	SMG6	ENST00000573166	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.058	-	-	-	no_errors	SMG6	HGNC	ENSG00000070366	9	0	0	8	9	52.94	-	-	-	T	1990895	C	T	1990895	1	4	148	0	1	0	0	0	0	0	0	0	14886	754	26	4		4	SMG6	17	1990895	RNA	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		1990895	79204315	70	8624										
TP53	0	genome.wustl.edu	37	chr17	7577156	7577156	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tccgtcccagtagattaccaCtactcaggataggaaaagag	9	10	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	7577156	7577156	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.783-1	e7-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	18	0	0	14	27	65.85	-	-	-	A	7577156	C	A	7577156	5	1	148	1	0	0	0	0	0	0	1	0	16477	579	20	4	504	4	TP53	17	7577156	Splice_Site	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	5586261	7577156	73618054	71	8625										
WSB1	0	genome.wustl.edu	37	chr17	25621392	25621392	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tctgttgttgggtccgcatcGtattcccggaatcagacggt	12	10	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	25621392	25621392	G	A	SNP	WSB1	ENST00000578312	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.215	-	-	-	no_errors	WSB1	HGNC	ENSG00000109046	35	0	0	28	33	54.1	-	-	-	A	25621392	G	A	25621392	1	1	148	0	1	0	0	0	0	0	0	0	17501	1160	40	1		1	WSB1	17	25621392	RNA	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	18044236	25621392	55573818	72	8626										
RUNDC3A	0	genome.wustl.edu	37	chr17	42390505	42390505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	aggtccagtgagctggttcaGctcagacgggcagcggggct	17	10	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	42390505	42390505	G	T	SNP	RUNDC3A	ENST00000426726	human	ensembl	69_37n	1	known	missense	c.257	p.S86I	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3A	HGNC	ENSG00000108309	53	0	0	34	13	27.66	-	-	-	T	42390505	G	T	42390505	3	4	148	1	0	0	0	0	1	0	0	0	13830	971	34	4	267	4	RUNDC3A	17	42390505	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	16769113	42390505	38804705	73	8627										
BPTF	0	genome.wustl.edu	37	chr17	65908221	65908221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	agaacaagtacatttcaaatAaatggaaaagataataaacc	5	5	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	65908221	65908221	A	G	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.4599	p.I1533M	0.997	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	30	0	0	16	7	30.43	-	-	-	G	65908221	A	G	65908221	3	3	148	1	0	0	0	0	1	0	0	0	1503	352	13	5	4649	5	BPTF	17	65908221	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	23517716	65908221	15286989	74	8628										
ABCA6	0	genome.wustl.edu	37	chr17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ttaccaaagataagccatatAaaaaaaagagtataaatatg							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	67125767	67125767	A	-	DEL	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	frame_shift_del	c.917	p.L306fs	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	12	0	0	18	2	10	-	-	-	-	67125767	A	-	67125767	7	5	148	1	0	1	0	1	0	0	0	0	36	372	13	0	4068	0	ABCA6	17	67125767	Frame_Shift_Del	DEL	A	TCGA-A7-A4SE-01A-11D-A25Q-09	1217546	67125767	14069443	75	8629										
QRICH2	0	genome.wustl.edu	37	chr17	74273320	74273320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggcggctgcggtggtaggggTaggtgagggtgtggctgccc	23	7	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	17	74273320	74273320	T	C	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.4691	p.Y1564C	1.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	149	1	0.66	48	65	56.52	-	-	-	C	74273320	T	C	74273320	3	2	148	1	0	0	0	0	1	0	0	0	12963	1638	57	5	316	5	QRICH2	17	74273320	Missense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	7147553	74273320	6921890	76	8630										
SLC38A10	0	genome.wustl.edu	37	chr17	79226306	79226306	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gctcttgtttctctctttctGagtcgggcagaggcggcgcc	13	12	4	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	17	79226306	79226306	G	A	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.1634	p.S545L	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	25	0	0	16	20	55.56	-	-	-	A	79226306	G	A	79226306	3	1	148	1	0	0	0	0	1	0	0	0	14691	1294	45	2	2019	2	SLC38A10	17	79226306	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	4952986	79226306	1968904	77	8631										
PLIN5	0	genome.wustl.edu	37	chr19	4529549	4529550	+	Frame_Shift_Del	DEL	CT	CT	-													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tatacacatatacatatataCttatacgtatatatacatat							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	4529549	4529550	CT	-	DEL	PLIN5	ENST00000588887	human	ensembl	69_37n	-1	putative	frame_shift_del	c.389_388	p.S130fs	0.012:0.016	NULL	pfam_Perilipin	-	no_stop_codon	PLIN5	HGNC	ENSG00000214456	8	0	0	8	5	38.46	-	-	-	-	4529550	CT	-	4529549	7	5	148	1	0	1	0	1	0	0	0	0	12167	580	20	0		0	PLIN5	19	4529549	Frame_Shift_Del	DEL	CT	TCGA-A7-A4SE-01A-11D-A25Q-09		4529549	54599434	78	8632										
KANK2	0	genome.wustl.edu	37	chr19	11289299	11289299	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tccctgtgggtgggctcctgGgtgggcactcggcctgtgct	17	12	0	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	11289299	11289299	G	T	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	silent	c.1347	p.T449	0.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	90	0	0	105	54	33.75	-	-	-	T	11289299	G	T	11289299	2	4	148	1	0	0	0	0	0	0	0	1	8031	1219	43	4		4	KANK2	19	11289299	Silent	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	6759750	11289299	47839684	79	8633										
HOOK2	0	genome.wustl.edu	37	chr19	12885350	12885350	+	RNA	DEL	A	A	-													0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gggtgagtactccatagatgAatggatgaacaaatggttga							TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	12885350	12885350	A	-	DEL	HOOK2	ENST00000589965	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HOOK2	HGNC	ENSG00000095066	82	0	0	102	40	28.17	-	-	-	-	12885350	A	-	12885350	6	5	148	0	1	1	0	1	0	0	0	0	7334	261	9	0		0	HOOK2	19	12885350	RNA	DEL	A	TCGA-A7-A4SE-01A-11D-A25Q-09	1596051	12885350	46243633	80	8634										
CD97	0	genome.wustl.edu	37	chr19	14508585	14508585	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tggaagcccagacacggaatCccgaataaccaaaaggacac	9	12	0	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	19	14508585	14508585	C	G	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	missense	c.741	p.I247M	0.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	13	0	0	7	4	36.36	-	-	-	G	14508585	C	G	14508585	3	3	148	1	0	0	0	0	1	0	0	0	3078	845	30	2	767	2	CD97	19	14508585	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1623235	14508585	44620398	81	8635										
EMR2	0	genome.wustl.edu	37	chr19	14876501	14876501	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gtgtccttttggttattcggGattccgtgtctgggcttcca	12	9	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	14876501	14876501	G	C	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.750	p.I250M	0.002	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	39	0	0	72	9	11.11	-	-	-	C	14876501	G	C	14876501	3	2	148	1	0	0	0	0	1	0	0	0	5142	1164	41	2	1777	2	EMR2	19	14876501	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	367916	14876501	44252482	82	8636										
NWD1	0	genome.wustl.edu	37	chr19	16842052	16842052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	agcactgcctaccctgaagtGccagaccttctgccagaggc	10	15	1	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	19	16842052	16842052	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.44	p.C15F	0.578	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	30	0	0	33	4	10.81	-	-	-	T	16842052	G	T	16842052	3	4	148	1	0	0	0	0	1	0	0	0	10854	1334	46	4		4	NWD1	19	16842052	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	1965551	16842052	42286931	83	8637										
ELL	0	genome.wustl.edu	37	chr19	18557189	18557189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gggtgaaccgccgcgtgatgCgctcaatgcgggcgtgcagg	18	11	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	18557189	18557189	C	T	SNP	ELL	ENST00000262809	human	ensembl	69_37n	-1	known	missense	c.1634	p.R545H	0.783	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656	17	0	0	10	11	52.38	-	-	-	T	18557189	C	T	18557189	3	4	148	1	0	0	0	0	1	0	0	0	5099	768	27	1	243	1	ELL	19	18557189	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1715137	18557189	40571794	84	8638										
ZNF99	0	genome.wustl.edu	37	chr19	22952765	22952765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	acagaataagtcttgtacatTtttcagaccaaaaagacatg	6	7	2	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	22952765	22952765	T	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.20	p.K7I	0.020	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	27	0	0	38	23	37.7	-	-	-	A	22952765	T	A	22952765	3	1	148	1	0	0	0	0	1	0	0	0	18297	1841	64	5	3120	5	ZNF99	19	22952765	Missense_Mutation	SNP	T	TCGA-A7-A4SE-01A-11D-A25Q-09	4395576	22952765	36176218	85	8639										
GLTSCR1	0	genome.wustl.edu	37	chr19	48205643	48205643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	caccctccagtcacaacggtGgcctcggcgccaggacgttg	12	16	1	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-11A-61D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	5a3f2e8d-3fb3-472d-8ac2-e4983a438de9	19	48205643	48205643	G	A	SNP	GLTSCR1	ENST00000396720	human	ensembl	69_37n	1	known	missense	c.4654	p.G1552S	0.949	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169	22	0	0	18	4	18.18	-	-	-	A	48205643	G	A	48205643	3	1	148	1	0	0	0	0	1	0	0	0	6526	1348	47	4	4704	4	GLTSCR1	19	48205643	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	25252878	48205643	10923340	86	8640										
ZNF582	0	genome.wustl.edu	37	chr19	56896446	56896446	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	atcttggaaacttgaacactCaagaccataacttgtaaggc	7	9	2	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	56896446	56896446	C	G	SNP	ZNF582	ENST00000301310	human	ensembl	69_37n	-1	known	missense	c.340	p.E114Q	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	52	0	0	59	8	11.94	-	-	-	G	56896446	C	G	56896446	3	3	148	1	0	0	0	0	1	0	0	0	18110	835	29	2	1217	2	ZNF582	19	56896446	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	8690803	56896446	2232537	87	8641										
ZNF17	0	genome.wustl.edu	37	chr19	57931914	57931914	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tcattagacatcagaaagttCacactggagaaaggcctttt	8	8	3	3			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	19	57931914	57931914	C	T	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.1054	p.H352Y	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	54	0	0	39	13	25	-	-	-	T	57931914	C	T	57931914	3	4	148	1	0	0	0	0	1	0	0	0	17839	826	29	2	1064	2	ZNF17	19	57931914	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	1035468	57931914	1197069	88	8642										
SIRPA	0	genome.wustl.edu	37	chr20	1905491	1905491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	ggtggccctactgatggcggCcctctacctcgtccgaatca	11	15	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	20	1905491	1905491	C	T	SNP	SIRPA	ENST00000400068	human	ensembl	69_37n	1	known	missense	c.1169	p.A390V	0.942	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPA	HGNC	ENSG00000198053	101	0	0	76	35	31.53	-	-	-	T	1905491	C	T	1905491	3	4	148	1	0	0	0	0	1	0	0	0	14421	739	26	4	1187	4	SIRPA	20	1905491	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09		1905491	61120029	89	8643										
MYLK2	0	genome.wustl.edu	37	chr20	30422261	30422261	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gtgagagagagggcgcccagCccaggcctggtggaggggga	21	9	0	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	20	30422261	30422261	C	A	SNP	MYLK2	ENST00000468730	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MYLK2	HGNC	ENSG00000101306	27	0	0	32	11	25.58	-	-	-	A	30422261	C	A	30422261	1	1	148	0	1	0	0	0	0	0	0	0	10129	754	26	4		4	MYLK2	20	30422261	RNA	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	28516770	30422261	32603259	90	8644										
EIF2S2	0	genome.wustl.edu	37	chr20	32677589	32677589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	gcccgtgacagcctggaagcCggttttgatactggcaacag	13	11	0	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	20	32677589	32677589	C	A	SNP	EIF2S2	ENST00000374980	human	ensembl	69_37n	-1	known	missense	c.949	p.G317C	1.000	NULL	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977	28	0	0	72	13	15.29	-	-	-	A	32677589	C	A	32677589	3	1	148	1	0	0	0	0	1	0	0	0	5045	652	23	3	56	3	EIF2S2	20	32677589	Missense_Mutation	SNP	C	TCGA-A7-A4SE-01A-11D-A25Q-09	2255328	32677589	30347931	91	8645										
CTNNBL1	0	genome.wustl.edu	37	chr20	36470666	36470666	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	taagggagcgacagtgagatGaataggagtgccactgttct	14	6	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	20	36470666	36470666	G	C	SNP	CTNNBL1	ENST00000472237	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.455	-	-	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	28	0	0	27	15	35.71	-	-	-	C	36470666	G	C	36470666	1	2	148	0	1	0	0	0	0	0	0	0	4050	1305	45	2		2	CTNNBL1	20	36470666	RNA	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	3793077	36470666	26554854	92	8646										
POLA1	0	genome.wustl.edu	37	chrX	24721368	24721368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	tgaaacttgtataatggtagGtcgaggacttcacaggtgtt	12	5	1	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	X	24721368	24721368	G	C	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.169	p.V57L	1.000	pfam_DNA_pol_a_cat_su_N,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	29	0	0	27	8	22.86	-	-	-	C	24721368	G	C	24721368	3	2	148	1	0	0	0	0	1	0	0	0	12261	1275	44	4	161	4	POLA1	23	24721368	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09		24721368	130549192	93	8647										
WDR13	0	genome.wustl.edu	37	chrX	48459020	48459020	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	aacaacctcactgtggtcagGctccaggacacccactcacc	7	17	3	0			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	X	48459020	48459020	G	T	SNP	WDR13	ENST00000482760	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940	74	0	0	72	36	33.03	-	-	-	T	48459020	G	T	48459020	1	4	148	0	1	0	0	0	0	0	0	0	17372	1218	42	4		4	WDR13	23	48459020	RNA	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	23737652	48459020	106811540	94	8648										
SLC25A43	0	genome.wustl.edu	37	chrX	118540557	118540557	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	caaaacccggttgatcatgcAgaacatactggaaccatcgt	8	11	1	2			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	X	118540557	118540557	A	T	SNP	SLC25A43	ENST00000217909	human	ensembl	69_37n	1	known	missense	c.410	p.Q137L	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713	54	0	0	59	31	34.44	-	-	-	T	118540557	A	T	118540557	3	4	148	1	0	0	0	0	1	0	0	0	14597	188	7	5	416	5	SLC25A43	23	118540557	Missense_Mutation	SNP	A	TCGA-A7-A4SE-01A-11D-A25Q-09	70081537	118540557	36730003	95	8649										
NDUFA1	0	genome.wustl.edu	37	chrX	119007279	119007279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.168421052631579	16	0.0118627280153532	2.16553176553177	2.65857694429123	1.65422565422565	0.302829060851577	0.930327025915261	9	atttgaaggaaaaaagggttGctcattttgggtatcactgg	12	4	2	1			TCGA-A7-A4SE-01A-11D-A25Q-09	TCGA-A7-A4SE-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e477299-592b-4018-bd17-0c2a646c7672	15e93d8f-1db4-4cf1-99dd-81d3fd90a898	X	119007279	119007279	G	A	SNP	NDUFA1	ENST00000371437	human	ensembl	69_37n	1	known	missense	c.115	p.A39T	0.971	pirsf_NADH_Ub_cplx-1_asu_su-1	pirsf_NADH_Ub_cplx-1_asu_su-1	-	no_errors	NDUFA1	HGNC	ENSG00000125356	48	0	0	86	14	14	-	-	-	A	119007279	G	A	119007279	3	1	148	1	0	0	0	0	1	0	0	0	10331	1319	46	4	121	4	NDUFA1	23	119007279	Missense_Mutation	SNP	G	TCGA-A7-A4SE-01A-11D-A25Q-09	466722	119007279	36263281	96	8650										
KIF17	0	genome.wustl.edu	37	chr1	20998492	20998492	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ttccagaagccgttatcttcGtcccagcaggactcacgcag	9	14	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	20998492	20998492	G	A	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	silent	c.2661	p.D887	0.899	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	125	0	0	98	54	35.29	-	-	-	A	20998492	G	A	20998492	2	1	149	1	0	0	0	0	0	0	0	1	8331	1136	40	1		1	KIF17	1	20998492	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		20998492	228252129	1	8651										
RHD	0	genome.wustl.edu	37	chr1	25634205	25634205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aggagctgatgcgtttggacGtgtctcagagaaatcatgga	14	6	2	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	25634205	25634205	G	A	SNP	RHD	ENST00000342055	human	ensembl	69_37n	1	putative	missense	c.1141	p.V381M	0.009	NULL	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010	79	0	0	19	4	17.39	-	-	-	A	25634205	G	A	25634205	3	1	149	1	0	0	0	0	1	0	0	0	13411	1160	40	1		1	RHD	1	25634205	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	4635713	25634205	223616416	2	8652										
LEPR	0	genome.wustl.edu	37	chr1	66088677	66088678	+	RNA	INS	-	-	T													0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcagaaggttgctttttcaaINSttttttttaacccagaatat							TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	66088677	66088678	-	T	INS	LEPR	ENST00000471762	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	LEPR	HGNC	ENSG00000116678	46	0	0	31	23	42.59	-	-	-	T	66088678	-	T	66088677	6	5	149	0	1	1	1	0	0	0	0	0	8782	116	4	0		0	LEPR	1	66088677	RNA	INS	-	TCGA-A7-A4SF-01A-11D-A25Q-09	40454472	66088677	183161944	3	8653										
IVL	0	genome.wustl.edu	37	chr1	152882383	152882383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcaggagcaaatgaaacagcCaactccactgcctcccccat	6	16	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	152882383	152882383	C	T	SNP	IVL	ENST00000368764	human	ensembl	69_37n	1	known	missense	c.110	p.P37L	0.023	pfam_Involucrin_N	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207	36	0	0	94	16	14.55	-	-	-	T	152882383	C	T	152882383	3	4	149	1	0	0	0	0	1	0	0	0	7983	594	21	4	112	4	IVL	1	152882383	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	86793706	152882383	96368238	4	8654										
ZBTB7B	0	genome.wustl.edu	37	chr1	154988894	154988894	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ctgcagcgccacctcaaaggCcagaactgcctggaggtgcg	13	14	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	154988894	154988894	C	A	SNP	ZBTB7B	ENST00000417934	human	ensembl	69_37n	1	known	silent	c.1455	p.G485	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685	59	0	0	132	20	13.07	-	-	-	A	154988894	C	A	154988894	2	1	149	1	0	0	0	0	0	0	0	1	17650	726	26	4		4	ZBTB7B	1	154988894	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	2106511	154988894	94261727	5	8655										
GON4L	0	genome.wustl.edu	37	chr1	155792255	155792256	+	Frame_Shift_Del	DEL	TT	TT	-													0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tccttttctcactttcttcaTtgtcttgttcttctgcaaat							TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	155792255	155792256	TT	-	DEL	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	frame_shift_del	c.710_709	p.N237fs	0.000:0.002	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	38	0	0	51	49	45.37	-	-	-	-	155792256	TT	-	155792255	7	5	149	1	0	1	0	1	0	0	0	0	6621	1493	52	0	6245	0	GON4L	1	155792255	Frame_Shift_Del	DEL	TT	TCGA-A7-A4SF-01A-11D-A25Q-09	803361	155792255	93458366	6	8656										
GON4L	0	genome.wustl.edu	37	chr1	155823536	155823536	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cctttatgctgtagggactcTgtcactgtagttcttctctt	8	10	4	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	155823536	155823536	T	C	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.36	p.T12	0.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	98	0	0	180	34	15.89	-	-	-	C	155823536	T	C	155823536	2	2	149	1	0	0	0	0	0	0	0	1	6621	1567	55	5		5	GON4L	1	155823536	Silent	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	31281	155823536	93427085	7	8657										
CCT3	0	genome.wustl.edu	37	chr1	156280797	156280797	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	acagttctggatcagggtacGaggaatgacctctagggcct	13	9	3	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	156280797	156280797	G	T	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	missense	c.1345	p.R449S	0.999	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	42	0	0	55	13	19.12	-	-	-	T	156280797	G	T	156280797	3	4	149	1	0	0	0	0	1	0	0	0	2983	1058	37	3	304	3	CCT3	1	156280797	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	457261	156280797	92969824	8	8658										
F5	0	genome.wustl.edu	37	chr1	169487737	169487737	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ccccaccaagatttcttaaaCgaagaagctgtgatttgctt	7	10	1	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	169487737	169487737	C	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	silent	c.6273	p.S2091	0.066	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	67	0	0	85	69	44.81	-	-	-	A	169487737	C	A	169487737	2	1	149	1	0	0	0	0	0	0	0	1	5385	523	19	3		3	F5	1	169487737	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	13206940	169487737	79762884	9	8659										
LGR6	0	genome.wustl.edu	37	chr1	202287564	202287564	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ctggcctcagtgggagaataCggggcctccccactctgcct	12	15	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	202287564	202287564	C	T	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	silent	c.2133	p.Y711	0.572	pfam_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	49	0	0	113	21	15.67	-	-	-	T	202287564	C	T	202287564	2	4	149	1	0	0	0	0	0	0	0	1	8813	547	19	1		1	LGR6	1	202287564	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	32799827	202287564	46963057	10	8660										
PARP1	0	genome.wustl.edu	37	chr1	226562032	226562032	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ttggtgccaggatttactgtCagcttcttcactgcctcttc	8	12	4	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	226562032	226562032	C	T	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	silent	c.1965	p.L655	1.000	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	76	0	0	108	27	20	-	-	-	T	226562032	C	T	226562032	2	4	149	1	0	0	0	0	0	0	0	1	11527	813	29	2		2	PARP1	1	226562032	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	24274468	226562032	22688589	11	8661										
ACTA1	0	genome.wustl.edu	37	chr1	229567561	229567561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gtggtgccccccgacatgacGttgttggcatacaggtcctt	12	12	0	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	1	229567561	229567561	G	A	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	silent	c.897	p.N299	0.967	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	52	0	0	108	27	20	-	-	-	A	229567561	G	A	229567561	2	1	149	1	0	0	0	0	0	0	0	1	191	1136	40	1		1	ACTA1	1	229567561	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	3005529	229567561	19683060	12	8662										
MYT1L	0	genome.wustl.edu	37	chr2	1820060	1820060	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcgatcattctgagctacgcTgtatggattagcgaatgaag	12	7	2	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	1820060	1820060	T	C	SNP	MYT1L	ENST00000471668	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MYT1L	HGNC	ENSG00000186487	47	0	0	77	9	10.47	-	-	-	C	1820060	T	C	1820060	1	2	149	0	1	0	0	0	0	0	0	0	10179	1595	55	5		5	MYT1L	2	1820060	RNA	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09		1820060	241379313	13	8663										
KIDINS220	0	genome.wustl.edu	37	chr2	8943114	8943114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	agcagatcctgcacaatctcCgtatgtccctcctttgatgc	7	14	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	8943114	8943114	C	T	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	silent	c.747	p.T249	0.114	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	66	0	0	71	46	39.32	-	-	-	T	8943114	C	T	8943114	2	4	149	1	0	0	0	0	0	0	0	1	8323	639	23	1		1	KIDINS220	2	8943114	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	7123054	8943114	234256259	14	8664										
CIB4	0	genome.wustl.edu	37	chr2	26846282	26846282	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	accattcccaccccacctacTtttaggatttcttgaaaggc	5	14	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	26846282	26846282	T	C	SNP	CIB4	ENST00000405346	human	ensembl	69_37n	-1	putative	silent	c.192	p.K64	0.001	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CIB4	HGNC	ENSG00000157884	28	0	0	29	5	14.71	-	-	-	C	26846282	T	C	26846282	2	2	149	1	0	0	0	0	0	0	0	1	3452	1624	56	5		5	CIB4	2	26846282	Silent	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	17903168	26846282	216353091	15	8665										
LRRTM4	0	genome.wustl.edu	37	chr2	77746565	77746565	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	agattgcaatgtctgaagctTattgtaggagaggtccagat	12	5	1	4			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	77746565	77746565	T	G	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	missense	c.433	p.K145Q	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	63	0	0	46	23	33.33	-	-	-	G	77746565	T	G	77746565	3	3	149	1	0	0	0	0	1	0	0	0	9108	1763	61	5	1356	5	LRRTM4	2	77746565	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	50900283	77746565	165452808	16	8666										
LRRTM1	0	genome.wustl.edu	37	chr2	80530244	80530244	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcaggcagagcgagtgcaggGagatgaggcgcgggaagtgg	22	6	0	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	80530244	80530244	G	C	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	missense	c.701	p.S234C	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	110	0	0	139	38	21.35	-	-	-	C	80530244	G	C	80530244	3	2	149	1	0	0	0	0	1	0	0	0	9105	1174	41	2	871	2	LRRTM1	2	80530244	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	2783679	80530244	162669129	17	8667										
ABCB11	0	genome.wustl.edu	37	chr2	169851868	169851868	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cagctacttactcagagaatCttgtattcagctcccccact	5	14	3	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	169851868	169851868	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.602	p.R201K	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	44	0	0	37	17	31.48	-	-	-	T	169851868	C	T	169851868	3	4	149	1	0	0	0	0	1	0	0	0	42	913	32	2	3451	2	ABCB11	2	169851868	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	89321624	169851868	73347505	18	8668										
SPHKAP	0	genome.wustl.edu	37	chr2	228882097	228882097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcatggctgagttcagaatgCtgctggcgttcttgccagca	13	10	2	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	228882097	228882097	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.3473	p.S1158N	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	16	0	0	35	9	20.45	-	-	-	T	228882097	C	T	228882097	3	4	149	1	0	0	0	0	1	0	0	0	15139	797	28	4	1653	4	SPHKAP	2	228882097	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	59030229	228882097	14317276	19	8669										
SPHKAP	0	genome.wustl.edu	37	chr2	228883414	228883414	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gactcatcttcttgaacgtgAagcatatcacatctaaaagc	6	10	5	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	228883414	228883414	A	G	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.2156	p.F719S	0.999	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	53	0	0	63	24	27.59	-	-	-	G	228883414	A	G	228883414	3	3	149	1	0	0	0	0	1	0	0	0	15139	246	9	5	2970	5	SPHKAP	2	228883414	Missense_Mutation	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09	1317	228883414	14315959	20	8670										
GPR55	0	genome.wustl.edu	37	chr2	231775322	231775322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ggtaacggatggccaagaacCggtccatgctgatgaagcag	14	9	0	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	231775322	231775322	C	T	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	missense	c.356	p.R119Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	48	0	0	55	11	16.67	-	-	-	T	231775322	C	T	231775322	3	4	149	1	0	0	0	0	1	0	0	0	6749	652	23	1	607	1	GPR55	2	231775322	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	2891908	231775322	11424051	21	8671										
GIGYF2	0	genome.wustl.edu	37	chr2	233680382	233680382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gtgtatgggatcttcctctgGacaccacgacaccaggccct	10	14	2	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	233680382	233680382	G	T	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	missense	c.2209	p.D737Y	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	203	0	0	233	83	26.27	-	-	-	T	233680382	G	T	233680382	3	4	149	1	0	0	0	0	1	0	0	0	6430	1174	41	2	2279	2	GIGYF2	2	233680382	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	1905060	233680382	9518991	22	8672										
TRPM8	0	genome.wustl.edu	37	chr2	234891789	234891789	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	atccttaggcagaatgagcaGcgctggaggtggatattccg	14	8	0	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	2	234891789	234891789	G	C	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.2682	p.Q894H	0.356	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	60	0	0	100	34	25.37	-	-	-	C	234891789	G	C	234891789	3	2	149	1	0	0	0	0	1	0	0	0	16688	962	34	4	2756	4	TRPM8	2	234891789	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	1211407	234891789	8307584	23	8673										
CNTN4	0	genome.wustl.edu	37	chr3	3085388	3085388	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcggaagtaaaaggatacaaAgtaggtaatttcttttttgc	9	4	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	3085388	3085388	A	G	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	silent	c.2811	p.K937	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	49	0	0	28	27	49.09	-	-	-	G	3085388	A	G	3085388	2	3	149	1	0	0	0	0	0	0	0	1	3673	86	3	5		5	CNTN4	3	3085388	Silent	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09		3085388	194937042	24	8674										
LMCD1	0	genome.wustl.edu	37	chr3	8578971	8578971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcttgctgatggactccaagTattccaccctcactgctcgg	9	14	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	8578971	8578971	T	C	SNP	LMCD1	ENST00000157600	human	ensembl	69_37n	1	known	missense	c.232	p.Y78H	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282	35	0	0	34	20	37.04	-	-	-	C	8578971	T	C	8578971	3	2	149	1	0	0	0	0	1	0	0	0	8900	1638	57	5	242	5	LMCD1	3	8578971	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	5493583	8578971	189443459	25	8675										
LTF	0	genome.wustl.edu	37	chr3	46497446	46497446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cccttcttcaccacagccacGgcataatagtgagttcgtgg	9	13	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	46497446	46497446	G	A	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	silent	c.339	p.A113	0.602	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	56	0	0	61	7	10.14	-	-	-	A	46497446	G	A	46497446	2	1	149	1	0	0	0	0	0	0	0	1	9145	1103	39	1		1	LTF	3	46497446	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	37918475	46497446	151524984	26	8676										
STAG1	0	genome.wustl.edu	37	chr3	136059362	136059362	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aaccatggtgtcctcaaattCttcattcatatcttctaact	3	11	6	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	136059362	136059362	C	T	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.3643	p.E1215K	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	36	0	0	20	12	37.5	-	-	-	T	136059362	C	T	136059362	3	4	149	1	0	0	0	0	1	0	0	0	15333	922	32	2	145	2	STAG1	3	136059362	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	89561916	136059362	61963068	27	8677										
CHST2	0	genome.wustl.edu	37	chr3	142840236	142840236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gaatcccgaggtgttctttcTctacgagccagtgtggcatg	12	10	2	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	142840236	142840236	T	C	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	missense	c.578	p.L193P	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	60	0	0	40	24	36.92	-	-	-	C	142840236	T	C	142840236	3	2	149	1	0	0	0	0	1	0	0	0	3433	1551	54	5	580	5	CHST2	3	142840236	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	6780874	142840236	55182194	28	8678										
IGSF10	0	genome.wustl.edu	37	chr3	151163264	151163264	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aggattcgtgcagcttgaccActgtatttgtcataagcccg	10	10	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	151163264	151163264	A	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.4505	p.V1502E	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	61	0	0	41	24	36.92	-	-	-	T	151163264	A	T	151163264	3	4	149	1	0	0	0	0	1	0	0	0	7651	159	6	5	3426	5	IGSF10	3	151163264	Missense_Mutation	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09	8323028	151163264	46859166	29	8679										
LEKR1	0	genome.wustl.edu	37	chr3	156544156	156544156	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cgtttcacacccgtcctagtCgaagtcgaggtgagggacga	13	11	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	156544156	156544156	C	G	SNP	LEKR1	ENST00000489350	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-6F2.7	Clone_based_vega_gene	ENSG00000197980	81	0	0	54	31	36.47	-	-	-	G	156544156	C	G	156544156	1	3	149	0	1	0	0	0	0	0	0	0	8771	899	31	3		3	LEKR1	3	156544156	RNA	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	5380892	156544156	41478274	30	8680										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	52	0	0	19	46	70.77	-	-	-	A	178936082	G	A	178936082	3	1	149	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	22391926	178936082	19086348	31	8681										
LIPH	0	genome.wustl.edu	37	chr3	185229372	185229372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcctgagcttgtaccttgggCctattagagatcctgtagag	11	9	0	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	3	185229372	185229372	C	T	SNP	LIPH	ENST00000296252	human	ensembl	69_37n	-1	known	missense	c.1208	p.G403D	1.000	superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPH	HGNC	ENSG00000163898	59	0	0	57	26	30.95	-	-	-	T	185229372	C	T	185229372	3	4	149	1	0	0	0	0	1	0	0	0	8880	739	26	4	155	4	LIPH	3	185229372	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	6293290	185229372	12793058	32	8682										
CYP2U1	0	genome.wustl.edu	37	chr4	108866300	108866300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	agaccccttctgccctttctCcatcatcagcaatgccgtct	5	17	5	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	4	108866300	108866300	C	T	SNP	CYP2U1	ENST00000332884	human	ensembl	69_37n	1	known	missense	c.665	p.S222F	0.997	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016	55	0	0	38	20	34.48	-	-	-	T	108866300	C	T	108866300	3	4	149	1	0	0	0	0	1	0	0	0	4206	855	30	2	671	2	CYP2U1	4	108866300	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		108866300	82287976	33	8683										
SEPP1	0	genome.wustl.edu	37	chr5	42808293	42808293	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	caggtatcagctggcttgaaGaagagcaaccacagtcactg	11	10	2	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	42808293	42808293	G	C	SNP	SEPP1	ENST00000506577	human	ensembl	69_37n	-1	known	missense	c.163	p.L55V	1.000	pfam_Selenoprotein-P_N	pfam_Selenoprotein-P_N,pfam_SelP_C	-	pseudogene	SEPP1	HGNC	ENSG00000250722	81	0	0	125	18	12.59	-	-	-	C	42808293	G	C	42808293	3	2	149	1	0	0	0	0	1	0	0	0	14145	942	33	2	998	2	SEPP1	5	42808293	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		42808293	138106967	34	8684										
BHMT2	0	genome.wustl.edu	37	chr5	78384371	78384371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cttcaggcagacctttctgtCcttcgctgtcaaagccagac	8	14	3	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	78384371	78384371	C	G	SNP	BHMT2	ENST00000255192	human	ensembl	69_37n	1	known	missense	c.1066	p.P356A	1.000	superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840	36	0	0	19	15	44.12	-	-	-	G	78384371	C	G	78384371	3	3	149	1	0	0	0	0	1	0	0	0	1431	855	30	2	1096	2	BHMT2	5	78384371	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	35576078	78384371	102530889	35	8685										
CMYA5	0	genome.wustl.edu	37	chr5	79095233	79095233	+	Missense_Mutation	SNP	G	G	T													0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gtattgtgagtgatgttcatGtgactgagcgtccagccaga							TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	79095233	79095233	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.12004	p.V4002L	0.993	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	62	0	0	68	29	29.9	-	-	-	T	79095233	G	T	79095233	3	4	149	1	0	0	0	0	1	0	0	0	3620	1377	48	4	12054	4	CMYA5	5	79095233	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	710862	79095233	101820027	36	8686	66	2								
CMYA5	0	genome.wustl.edu	37	chr5	79095234	79095234	+	Missense_Mutation	SNP	T	T	G													0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tattgtgagtgatgttcatgTgactgagcgtccagccagag							TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	79095234	79095234	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.12005	p.V4002G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	62	0	0	68	28	29.17	-	-	-	G	79095234	T	G	79095234	3	3	149	1	0	0	0	0	1	0	0	0	3620	1696	59	5	12055	5	CMYA5	5	79095234	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	1	79095234	101820026	37	8687	66	2								
PCDHA11	0	genome.wustl.edu	37	chr5	140250555	140250555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gctcgcgcatcccgttccgcGtggggctgtacacgggcgag	16	14	0	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	140250555	140250555	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1867	p.V623M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	143	0	0	120	67	35.83	-	-	-	A	140250555	G	A	140250555	3	1	149	1	0	0	0	0	1	0	0	0	11594	1145	40	1	1869	1	PCDHA11	5	140250555	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	61155321	140250555	40664705	38	8688										
PCDHB6	0	genome.wustl.edu	37	chr5	140531179	140531179	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gacgtcaatgacaacgtcccCgccttcacccaaacctccta	5	18	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	140531179	140531179	C	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	silent	c.1341	p.P447	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	122	0	0	113	51	31.1	-	-	-	A	140531179	C	A	140531179	2	1	149	1	0	0	0	0	0	0	0	1	11619	639	23	3		3	PCDHB6	5	140531179	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	280624	140531179	40384081	39	8689										
PWWP2A	0	genome.wustl.edu	37	chr5	159520690	159520690	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aacactgtttttacatttatCacacagaacttgcctgggtc	6	10	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	5	159520690	159520690	C	G	SNP	PWWP2A	ENST00000307063	human	ensembl	69_37n	-1	known	missense	c.967	p.D323H	1.000	NULL	pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	PWWP2A	HGNC	ENSG00000170234	70	0	0	86	11	11.34	-	-	-	G	159520690	C	G	159520690	3	3	149	1	0	0	0	0	1	0	0	0	12928	826	29	2	1446	2	PWWP2A	5	159520690	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	18989511	159520690	21394570	40	8690										
ELOVL4	0	genome.wustl.edu	37	chr6	80629179	80629179	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cgtttccaccaaagatatttCtgaatccatgggccaaatgc	7	11	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	6	80629179	80629179	C	A	SNP	ELOVL4	ENST00000369816	human	ensembl	69_37n	-1	known	missense	c.627	p.Q209H	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402	34	0	0	45	12	21.05	-	-	-	A	80629179	C	A	80629179	3	1	149	1	0	0	0	0	1	0	0	0	5113	912	32	2	325	2	ELOVL4	6	80629179	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		80629179	90485888	41	8691										
PDE1C	0	genome.wustl.edu	37	chr7	31917594	31917594	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcgtattacctttaatgcctCaataacagctggtggatagc	8	9	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	7	31917594	31917594	C	A	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	nonsense	c.481	p.E161*	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	47	0	0	80	18	18.18	-	-	-	A	31917594	C	A	31917594	4	1	149	1	0	0	0	0	0	1	0	0	11708	835	29	2	1475	2	PDE1C	7	31917594	Nonsense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		31917594	127221069	42	8692										
RP1L1	0	genome.wustl.edu	37	chr8	10480628	10480628	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ttcttggctggcgtgaccttGgtgaccgagggggtgcgagc	18	9	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	8	10480628	10480628	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	silent	c.84	p.T28	0.998	superfamily_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	24	0	0	29	15	34.09	-	-	-	T	10480628	G	T	10480628	2	4	149	1	0	0	0	0	0	0	0	1	13619	1335	47	4		4	RP1L1	8	10480628	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		10480628	135883394	43	8693										
BAI1	0	genome.wustl.edu	37	chr8	143566039	143566039	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gggccccaacgccaaggagcTgttccggctggtggaggact	16	12	0	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	8	143566039	143566039	T	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.2222	p.L741Q	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	81	0	0	100	65	39.39	-	-	-	A	143566039	T	A	143566039	3	1	149	1	0	0	0	0	1	0	0	0	1302	1580	55	5	2268	5	BAI1	8	143566039	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	133085411	143566039	2797983	44	8694										
CD274	0	genome.wustl.edu	37	chr9	5465705	5465705	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cgacttaacctctgcaaggtGgtgcaaaggcattccactgt	10	11	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	9	5465705	5465705	G	T	SNP	CD274	ENST00000492923	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD274	HGNC	ENSG00000120217	14	0	0	16	5	23.81	-	-	-	T	5465705	G	T	5465705	1	4	149	0	1	0	0	0	0	0	0	0	3020	1363	47	4		4	CD274	9	5465705	RNA	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		5465705	135747726	45	8695										
PRKACG	0	genome.wustl.edu	37	chr9	71628481	71628481	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	acctgcaggtagccctgctgGtcgatgaggagattctcggg	15	10	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	9	71628481	71628481	G	C	SNP	PRKACG	ENST00000377276	human	ensembl	69_37n	-1	known	missense	c.528	p.D176E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	50	0	0	44	32	42.11	-	-	-	C	71628481	G	C	71628481	3	2	149	1	0	0	0	0	1	0	0	0	12580	1252	44	4	531	4	PRKACG	9	71628481	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	66162776	71628481	69584950	46	8696										
ACBD5	0	genome.wustl.edu	37	chr10	27506953	27506953	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ttccagtttgccccaagtttTcatcaatgggctttacttct	6	11	3	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	10	27506953	27506953	T	A	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	missense	c.812	p.E271V	0.013	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	61	0	0	114	34	22.97	-	-	-	A	27506953	T	A	27506953	3	1	149	1	0	0	0	0	1	0	0	0	125	1783	62	5	820	5	ACBD5	10	27506953	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09		27506953	108027794	47	8697										
ECD	0	genome.wustl.edu	37	chr10	74914034	74914034	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cgatgtcattattcgtgtttCaggcaagaatgtcttgaaaa	9	6	3	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	10	74914034	74914034	C	T	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	missense	c.763	p.E255K	1.000	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882	59	0	0	90	14	13.46	-	-	-	T	74914034	C	T	74914034	3	4	149	1	0	0	0	0	1	0	0	0	4923	835	29	2	1310	2	ECD	10	74914034	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	47407081	74914034	60620713	48	8698										
CWF19L1	0	genome.wustl.edu	37	chr10	101993082	101993082	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gatctgacactgcctccagtCagacttatcaggaacattaa	7	11	3	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	10	101993082	101993082	C	T	SNP	CWF19L1	ENST00000354105	human	ensembl	69_37n	-1	known	missense	c.1519	p.D507N	1.000	pfam_Cwf19-like_C_dom-2	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485	56	0	0	37	43	53.75	-	-	-	T	101993082	C	T	101993082	3	4	149	1	0	0	0	0	1	0	0	0	4102	826	29	2	101	2	CWF19L1	10	101993082	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	27079048	101993082	33541665	49	8699										
AP2A2	0	genome.wustl.edu	37	chr11	972125	972125	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgatccgcctgatcaacaacGccatcaagaatgacctggcc	8	14	2	4			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	972125	972125	G	A	SNP	AP2A2	ENST00000529125	human	ensembl	69_37n	1	novel	splice_site	c.342+1	e4+1	1.000	-	-	-	no_errors	AP2A2	HGNC	ENSG00000183020	155	0	0	172	49	21.97	-	-	-	A	972125	G	A	972125	5	1	149	1	0	0	0	0	0	0	1	0	741	1087	38	1	357	1	AP2A2	11	972125	Splice_Site	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		972125	134034391	50	8700										
IGSF22	0	genome.wustl.edu	37	chr11	18739611	18739611	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ttcacatcgtacttgcccagGgagtactggatcctcagtgg	11	11	2	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	18739611	18739611	G	A	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	silent	c.840	p.S280	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	68	0	0	43	47	52.22	-	-	-	A	18739611	G	A	18739611	2	1	149	1	0	0	0	0	0	0	0	1	7654	1219	43	4		4	IGSF22	11	18739611	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	17767486	18739611	116266905	51	8701										
CELF1	0	genome.wustl.edu	37	chr11	47494725	47494725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ggcataaacatctgcagcagGtcctgatcaccaaactcctg	8	13	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	47494725	47494725	G	A	SNP	CELF1	ENST00000532048	human	ensembl	69_37n	-1	known	silent	c.1326	p.D442	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187	50	0	0	59	15	20.27	-	-	-	A	47494725	G	A	47494725	2	1	149	1	0	0	0	0	0	0	0	1	3244	1252	44	4		4	CELF1	11	47494725	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	28755114	47494725	87511791	52	8702										
OR8H1	0	genome.wustl.edu	37	chr11	56058069	56058069	+	Frame_Shift_Del	DEL	A	A	-													0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgctcatccaaaccacattgAcaaaggagttgataaagcta							TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	56058069	56058069	A	-	DEL	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	frame_shift_del	c.470	p.V157fs	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	87	0	0	58	20	25	-	-	-	-	56058069	A	-	56058069	7	5	149	1	0	1	0	1	0	0	0	0	11310	275	10	0	467	0	OR8H1	11	56058069	Frame_Shift_Del	DEL	A	TCGA-A7-A4SF-01A-11D-A25Q-09	8563344	56058069	78948447	53	8703										
FERMT3	0	genome.wustl.edu	37	chr11	63988103	63988103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcctcaacccctacggcctcGttgccccccgtttccagcga	8	20	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	63988103	63988103	G	A	SNP	FERMT3	ENST00000279227	human	ensembl	69_37n	1	known	missense	c.1519	p.V507I	0.990	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781	86	0	0	98	12	10.91	-	-	-	A	63988103	G	A	63988103	3	1	149	1	0	0	0	0	1	0	0	0	5865	1145	40	1	1561	1	FERMT3	11	63988103	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	7930034	63988103	71018413	54	8704										
TPCN2	0	genome.wustl.edu	37	chr11	68821648	68821648	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cctccaggggcgactgactgGgtccaaggcctccattgctg	13	14	0	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	68821648	68821648	G	C	SNP	TPCN2	ENST00000534832	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.180	-	-	-	no_errors	TPCN2	HGNC	ENSG00000162341	26	0	0	35	6	14.63	-	-	-	C	68821648	G	C	68821648	1	2	149	0	1	0	0	0	0	0	0	0	16492	1247	43	4		4	TPCN2	11	68821648	RNA	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	4833545	68821648	66184868	55	8705										
C11orf92	0	genome.wustl.edu	37	chr11	111169110	111169110	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	acttggcatgagggggaaaaAactcaaacctatacccgaag	10	9	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	111169110	111169110	A	T	SNP	C11orf92	ENST00000526150	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf92	HGNC	ENSG00000196167	38	0	0	36	4	10	-	-	-	T	111169110	A	T	111169110	1	4	149	0	1	0	0	0	0	0	0	0	1683	29	1	5		5	C11orf92	11	111169110	RNA	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09	42347462	111169110	23837406	56	8706										
PHLDB1	0	genome.wustl.edu	37	chr11	118509627	118509627	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aggagcgcctggccatcctgGacagtcaggctgggcagatc	15	12	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	118509627	118509627	G	C	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.2554	p.D852H	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	72	0	0	89	47	34.56	-	-	-	C	118509627	G	C	118509627	3	2	149	1	0	0	0	0	1	0	0	0	11925	1174	41	2	2592	2	PHLDB1	11	118509627	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	7340517	118509627	16496889	57	8707										
PHLDB1	0	genome.wustl.edu	37	chr11	118509911	118509911	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gctgactgtgctggaaaggaGataccactcactcacagggg	13	10	2	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	11	118509911	118509911	G	C	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.2678	p.R893T	0.994	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	41	0	0	25	12	32.43	-	-	-	C	118509911	G	C	118509911	3	2	149	1	0	0	0	0	1	0	0	0	11925	942	33	2	2720	2	PHLDB1	11	118509911	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	284	118509911	16496605	58	8708										
CDK17	0	genome.wustl.edu	37	chr12	96679861	96679861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aggctgtggtttatattttgGaaagttgtagttcttgaact	11	3	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	12	96679861	96679861	G	A	SNP	CDK17	ENST00000261211	human	ensembl	69_37n	-1	known	missense	c.1282	p.P428S	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK17	HGNC	ENSG00000059758	34	0	0	26	4	13.33	-	-	-	A	96679861	G	A	96679861	3	1	149	1	0	0	0	0	1	0	0	0	3162	1174	41	2	347	2	CDK17	12	96679861	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		96679861	37172034	59	8709										
TUBA3C	0	genome.wustl.edu	37	chr13	19751148	19751148	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	atggccgcgttgacatctttCgggaccacatcccccctgta	9	15	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	13	19751148	19751148	C	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	silent	c.975	p.P325	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	158	0	0	59	131	68.95	-	-	-	T	19751148	C	T	19751148	2	4	149	1	0	0	0	0	0	0	0	1	16843	871	31	1		1	TUBA3C	13	19751148	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		19751148	95418730	60	8710										
FREM2	0	genome.wustl.edu	37	chr13	39264280	39264280	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	atcactctcagagtaaatgtCcggccagtggatgatgaagt	11	8	2	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	13	39264280	39264280	C	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	silent	c.2799	p.V933	0.127	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	35	0	0	24	26	52	-	-	-	A	39264280	C	A	39264280	2	1	149	1	0	0	0	0	0	0	0	1	6094	842	30	2		2	FREM2	13	39264280	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	19513132	39264280	75905598	61	8711										
SLC24A4	0	genome.wustl.edu	37	chr14	92790284	92790284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ggccctggtgtgctgtgcgtCcggcctcttcggcagcttgg	16	13	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	14	92790284	92790284	C	G	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.110	p.S37C	0.995	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	166	0	0	177	63	26.14	-	-	-	G	92790284	C	G	92790284	3	3	149	1	0	0	0	0	1	0	0	0	14557	855	30	2	61	2	SLC24A4	14	92790284	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		92790284	14559256	62	8712										
UBR1	0	genome.wustl.edu	37	chr15	43360113	43360113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	aacctctttgtcaatggcagTggtatgcaactgggcctctg	11	10	3	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	15	43360113	43360113	T	C	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.781	p.T261A	0.777	pfam_ClpS_core,superfamily_Ribosomal_L7/12_C/ClpS-like	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	39	0	0	40	30	42.25	-	-	-	C	43360113	T	C	43360113	3	2	149	1	0	0	0	0	1	0	0	0	16998	1696	59	5	4636	5	UBR1	15	43360113	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09		43360113	59171279	63	8713										
PDILT	0	genome.wustl.edu	37	chr16	20387447	20387447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	acaaactctgccacctgctcGctgctgttgaacaaaaatgc	7	13	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	16	20387447	20387447	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	silent	c.486	p.S162	0.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	91	0	0	161	35	17.77	-	-	-	A	20387447	G	A	20387447	2	1	149	1	0	0	0	0	0	0	0	1	11747	1078	38	1		1	PDILT	16	20387447	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		20387447	69967306	64	8714										
EZH1	0	genome.wustl.edu	37	chr17	40855784	40855784	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cataacagttgggattcactGaatgatttgcaaatcgaatt	8	6	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	17	40855784	40855784	G	A	SNP	EZH1	ENST00000428826	human	ensembl	69_37n	-1	known	missense	c.2072	p.S691L	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799	32	0	0	29	4	12.12	-	-	-	A	40855784	G	A	40855784	3	1	149	1	0	0	0	0	1	0	0	0	5370	1294	45	2	183	2	EZH1	17	40855784	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		40855784	40339426	65	8715										
GFAP	0	genome.wustl.edu	37	chr17	42987611	42987611	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gaccttgtgattttccccgtCtttggtgcttttgccccctg	9	13	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	17	42987611	42987611	C	A	SNP	GFAP	ENST00000435360	human	ensembl	69_37n	-1	known	missense	c.1189	p.D397Y	1.000	NULL	pfam_F	-	no_errors	GFAP	HGNC	ENSG00000131095	39	0	0	37	18	32.73	-	-	-	A	42987611	C	A	42987611	3	1	149	1	0	0	0	0	1	0	0	0	6389	913	32	2	246	2	GFAP	17	42987611	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	2131827	42987611	38207599	66	8716										
PRKCA	0	genome.wustl.edu	37	chr17	64731690	64731690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gtggtgattcaggatgatgaCgtggagtgcaccatggtaga	16	5	1	4			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	17	64731690	64731690	C	T	SNP	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	silent	c.1140	p.D380	0.655	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	105	0	0	114	34	22.97	-	-	-	T	64731690	C	T	64731690	2	4	149	1	0	0	0	0	0	0	0	1	12588	535	19	1		1	PRKCA	17	64731690	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	21744079	64731690	16463520	67	8717										
GPR142	0	genome.wustl.edu	37	chr17	72365633	72365633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgtctgcgtaaggatcctggGgcaaacaaccacttggagag	13	9	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	17	72365633	72365633	G	A	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	silent	c.270	p.G90	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	65	0	0	72	73	50.34	-	-	-	A	72365633	G	A	72365633	2	1	149	1	0	0	0	0	0	0	0	1	6700	1219	43	4		4	GPR142	17	72365633	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	7633943	72365633	8829577	68	8718										
SRP68	0	genome.wustl.edu	37	chr17	74042252	74042252	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cattacgcttgattgccgttGatagcttgatgtaagtcagg	11	7	1	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	17	74042252	74042252	G	C	SNP	SRP68	ENST00000307877	human	ensembl	69_37n	-1	known	nonsense	c.1166	p.S389*	0.998	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881	79	0	0	55	21	27.63	-	-	-	C	74042252	G	C	74042252	4	2	149	1	0	0	0	0	0	1	0	0	15247	1294	45	2	741	2	SRP68	17	74042252	Nonsense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	1676619	74042252	7152958	69	8719										
ZNF536	0	genome.wustl.edu	37	chr19	30935417	30935417	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcgcaggaggaggagctcatCagccacgtggagaaggcaca	15	10	2	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	19	30935417	30935417	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.948	p.I316	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	59	0	0	91	38	29.46	-	-	-	T	30935417	C	T	30935417	2	4	149	1	0	0	0	0	0	0	0	1	18070	816	29	2		2	ZNF536	19	30935417	Silent	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		30935417	28193566	70	8720										
FCGBP	0	genome.wustl.edu	37	chr19	40421281	40421281	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gtgcaggtgcccatgaagtcGaagcgccggccgtcgaagct	15	12	0	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	19	40421281	40421281	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.2640	p.F880	0.052	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	88	0	0	88	84	48.84	-	-	-	A	40421281	G	A	40421281	2	1	149	1	0	0	0	0	0	0	0	1	5824	1049	37	1		1	FCGBP	19	40421281	Silent	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	9485864	40421281	18707702	71	8721										
LTBP4	0	genome.wustl.edu	37	chr19	41115529	41115529	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ctacacctgcgcttgcgactCtggcttccggctcagccccc	9	19	2	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	19	41115529	41115529	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.1721	p.S574C	0.438	smart_EGF-like,smart_EGF-like_Ca-bd	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	70	0	0	82	31	27.43	-	-	-	G	41115529	C	G	41115529	3	3	149	1	0	0	0	0	1	0	0	0	9142	913	32	2	2064	2	LTBP4	19	41115529	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	694248	41115529	18013454	72	8722										
CEACAM4	0	genome.wustl.edu	37	chr19	42132011	42132011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gccagttgcttggtcagagtCgtaactggcatttatggttc	12	8	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	19	42132011	42132011	C	T	SNP	CEACAM4	ENST00000221954	human	ensembl	69_37n	-1	known	missense	c.388	p.D130N	0.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	CEACAM4	HGNC	ENSG00000105352	74	0	0	56	55	49.55	-	-	-	T	42132011	C	T	42132011	3	4	149	1	0	0	0	0	1	0	0	0	3223	884	31	1	370	1	CEACAM4	19	42132011	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	1016482	42132011	16996972	73	8723										
NCOA5	0	genome.wustl.edu	37	chr20	44695747	44695747	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tcaacgggcctttcggcatcAaagcgtctctggatttcctc	9	13	3	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	20	44695747	44695747	A	C	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.576	p.F192L	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	47	0	0	115	29	20.14	-	-	-	C	44695747	A	C	44695747	3	2	149	1	0	0	0	0	1	0	0	0	10304	127	5	5	1179	5	NCOA5	20	44695747	Missense_Mutation	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09		44695747	18329773	74	8724										
DPM1	0	genome.wustl.edu	37	chr20	49562449	49562449	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	ggcatgtttcattccatgaaTatatgcagttcctaaaaatg	7	7	1	1			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	20	49562449	49562449	T	C	SNP	DPM1	ENST00000371582	human	ensembl	69_37n	-1	known	missense	c.307	p.I103V	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419	20	0	0	15	49	76.56	-	-	-	C	49562449	T	C	49562449	3	2	149	1	0	0	0	0	1	0	0	0	4759	1406	49	5	499	5	DPM1	20	49562449	Missense_Mutation	SNP	T	TCGA-A7-A4SF-01A-11D-A25Q-09	4866702	49562449	13463071	75	8725										
EEF1A2	0	genome.wustl.edu	37	chr20	62121849	62121849	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	cacctgggaggtgaactgagCagcctcctgcggcgggtcag	16	12	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	20	62121849	62121849	C	A	SNP	EEF1A2	ENST00000217182	human	ensembl	69_37n	-1	known	missense	c.1012	p.A338S	0.999	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210	93	0	0	322	49	13.21	-	-	-	A	62121849	C	A	62121849	3	1	149	1	0	0	0	0	1	0	0	0	4959	710	25	4	391	4	EEF1A2	20	62121849	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	12559400	62121849	903671	76	8726										
DSCR4	0	genome.wustl.edu	37	chr21	39492422	39492422	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgattgtggggctggcaagtCcagaatccgtaggagaagct	15	7	0	3			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	21	39492422	39492422	C	G	SNP	DSCR4	ENST00000328264	human	ensembl	69_37n	-1	known	missense	c.209	p.G70A	0.000	NULL	NULL	-	no_errors	DSCR4	HGNC	ENSG00000184029	56	0	0	193	27	12.27	-	-	-	G	39492422	C	G	39492422	3	3	149	1	0	0	0	0	1	0	0	0	4807	855	30	2	155	2	DSCR4	21	39492422	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09		39492422	8637473	77	8727										
GGA1	0	genome.wustl.edu	37	chr22	38005244	38005244	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	gcttcacggagtagcggcccGgggaaggagcacgcgagcgg	19	11	1	0			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	22	38005244	38005244	G	A	SNP	GGA1	ENST00000484804	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GGA1	HGNC	ENSG00000100083	10	0	0	12	7	36.84	-	-	-	A	38005244	G	A	38005244	1	1	149	0	1	0	0	0	0	0	0	0	6404	1131	39	1		1	GGA1	22	38005244	RNA	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09		38005244	13299322	78	8728										
ARSD	0	genome.wustl.edu	37	chrX	2825134	2825134	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgccattgcattccagcctgAgggacagagcgacactctgt	11	12	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	X	2825134	2825134	A	G	SNP	ARSD	ENST00000495294	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ARSD	HGNC	ENSG00000006756	12	0	0	10	10	50	-	-	-	G	2825134	A	G	2825134	1	3	149	0	1	0	0	0	0	0	0	0	993	319	11	5		5	ARSD	23	2825134	RNA	SNP	A	TCGA-A7-A4SF-01A-11D-A25Q-09		2825134	152445426	79	8729										
MOSPD2	0	genome.wustl.edu	37	chrX	14934369	14934369	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tgataatggctgcagaaatgGaacagtcatctggcacaggc	12	8	2	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	X	14934369	14934369	G	C	SNP	MOSPD2	ENST00000380492	human	ensembl	69_37n	1	known	missense	c.1237	p.E413Q	1.000	pfam_Major_sperm,superfamily_PapD-like,pfscan_Major_sperm	pfam_CRAL-TRIO_dom,pfam_Major_sperm,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_Major_sperm	-	no_errors	MOSPD2	HGNC	ENSG00000130150	40	0	0	28	14	33.33	-	-	-	C	14934369	G	C	14934369	3	2	149	1	0	0	0	0	1	0	0	0	9788	1175	41	2	1287	2	MOSPD2	23	14934369	Missense_Mutation	SNP	G	TCGA-A7-A4SF-01A-11D-A25Q-09	12109235	14934369	140336191	80	8730										
ZMYM3	0	genome.wustl.edu	37	chrX	70467295	70467295	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175	14	0.0231543973143692	2.12981481481481	2.73833333333333	1.82555555555556	0.728282095511384	1	7	tggttgcagaaatgacggatCtgcccacgccagtggatggt	14	9	1	2			TCGA-A7-A4SF-01A-11D-A25Q-09	TCGA-A7-A4SF-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd6babb0-c2bb-4a12-b522-448f993e86f0	7b28f197-a6a1-4649-a37e-fd1b63fe3a57	X	70467295	70467295	C	G	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.2220	p.Q740H	1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	39	0	0	74	9	10.84	-	-	-	G	70467295	C	G	70467295	3	3	149	1	0	0	0	0	1	0	0	0	17797	912	32	2	1950	2	ZMYM3	23	70467295	Missense_Mutation	SNP	C	TCGA-A7-A4SF-01A-11D-A25Q-09	55532926	70467295	84803265	81	8731										
PABPC4	0	genome.wustl.edu	37	chr1	40033473	40033473	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aaattctttccttaatttctCatcatcaatagtgtcatcca	2	10	5	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	40033473	40033473	C	T	SNP	PABPC4	ENST00000372858	human	ensembl	69_37n	-1	known	missense	c.922	p.E308K	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	50	0	0	43	7	14	-	-	-	T	40033473	C	T	40033473	3	4	150	1	0	0	0	0	1	0	0	0	11439	835	29	2	1096	2	PABPC4	1	40033473	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		40033473	209217148	1	8732										
WDR78	0	genome.wustl.edu	37	chr1	67293563	67293563	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	acatttgtgaatatgaccttCttcagtgccagccaaataga	7	9	2	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	67293563	67293563	C	A	SNP	WDR78	ENST00000371026	human	ensembl	69_37n	-1	known	nonsense	c.2044	p.E682*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	26	0	0	29	6	17.14	-	-	-	A	67293563	C	A	67293563	4	1	150	1	0	0	0	0	0	1	0	0	17425	922	32	2	518	2	WDR78	1	67293563	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	27260090	67293563	181957058	2	8733										
SPATA1	0	genome.wustl.edu	37	chr1	84999433	84999433	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agatgatacagctatcagtaGaagacaggacaatcaggtac	10	7	2	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	84999433	84999433	G	C	SNP	SPATA1	ENST00000431031	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.962	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	33	0	0	32	7	17.95	-	-	-	C	84999433	G	C	84999433	1	2	150	0	1	0	0	0	0	0	0	0	15089	942	33	2		2	SPATA1	1	84999433	RNA	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	17705870	84999433	164251188	3	8734										
PTBP2	0	genome.wustl.edu	37	chr1	97272403	97272403	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	attccatttttggattacctCtctgtggctccaaaaaaggt	7	9	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	97272403	97272403	C	G	SNP	PTBP2	ENST00000462433	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTBP2	HGNC	ENSG00000117569	22	0	0	34	8	19.05	-	-	-	G	97272403	C	G	97272403	1	3	150	0	1	0	0	0	0	0	0	0	12806	928	32	2		2	PTBP2	1	97272403	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	12272970	97272403	151978218	4	8735										
OLFML3	0	genome.wustl.edu	37	chr1	114523992	114523992	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ttgacagcagacacctacatCgacctggcagctgatgagga	11	11	0	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	114523992	114523992	C	T	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	silent	c.822	p.I274	0.249	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	33	0	0	42	15	26.32	-	-	-	T	114523992	C	T	114523992	2	4	150	1	0	0	0	0	0	0	0	1	10932	874	31	1		1	OLFML3	1	114523992	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	17251589	114523992	134726629	5	8736										
SPRR2B	0	genome.wustl.edu	37	chr1	153043174	153043174	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	atatttctgctggcactgctGaggtgggcagggctgtggac	16	8	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	153043174	153043174	G	A	SNP	SPRR2B	ENST00000341611	human	ensembl	69_37n	-1	known	nonsense	c.142	p.Q48*	0.000	NULL	NULL	-	no_errors	SPRR2B	HGNC	ENSG00000196805	130	0	0	196	40	16.95	-	-	-	A	153043174	G	A	153043174	4	1	150	1	0	0	0	0	0	1	0	0	15189	1299	45	2	80	2	SPRR2B	1	153043174	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	38519182	153043174	96207447	6	8737										
TOR1AIP1	0	genome.wustl.edu	37	chr1	179851716	179851716	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cccccagggcccccatccgaGagggaaggggccggctcgcc	15	18	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	179851716	179851716	G	A	SNP	TOR1AIP1	ENST00000435319	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	0.434	NULL	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	33	0	0	43	10	18.87	-	-	-	A	179851716	G	A	179851716	3	1	150	1	0	0	0	0	1	0	0	0	16468	943	33	2	81	2	TOR1AIP1	1	179851716	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	26808542	179851716	69398905	7	8738										
CEP350	0	genome.wustl.edu	37	chr1	180063698	180063698	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caggttgcttcttaagttctGaattggaagatgaaaaagaa	10	4	2	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	180063698	180063698	G	A	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.8458	p.E2820K	0.985	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	25	0	0	35	9	20.45	-	-	-	A	180063698	G	A	180063698	3	1	150	1	0	0	0	0	1	0	0	0	3283	1291	45	2	8588	2	CEP350	1	180063698	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	211982	180063698	69186923	8	8739										
HMCN1	0	genome.wustl.edu	37	chr1	186010160	186010160	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gataggttctctctggtggtCgaatcctagcattgaccagt	11	9	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	186010160	186010160	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	nonsense	c.6196	p.R2066*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	69	0	0	78	64	44.44	-	-	-	T	186010160	C	T	186010160	4	4	150	1	0	0	0	0	0	1	0	0	7271	876	31	1	6354	1	HMCN1	1	186010160	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	5946462	186010160	63240461	9	8740										
IGFN1	0	genome.wustl.edu	37	chr1	201196213	201196213	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	accccgcggtgtacagcactGacctgctgggcgtgtgctcc	13	15	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	201196213	201196213	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.10990	p.D3664N	0.133	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	53	0	0	51	22	30.14	-	-	-	A	201196213	G	A	201196213	3	1	150	1	0	0	0	0	1	0	0	0	7644	1290	45	2	11076	2	IGFN1	1	201196213	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	15186053	201196213	48054408	10	8741										
KCNH1	0	genome.wustl.edu	37	chr1	210857193	210857193	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ccggaggtggaggctgcctgGaaggatacgggcgtggcagg	21	8	0	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	210857193	210857193	G	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.2400	p.F800L	0.893	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	78	0	0	98	20	16.95	-	-	-	T	210857193	G	T	210857193	3	4	150	1	0	0	0	0	1	0	0	0	8085	1165	41	2	573	2	KCNH1	1	210857193	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	9660980	210857193	38393428	11	8742										
TARBP1	0	genome.wustl.edu	37	chr1	234593419	234593419	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	atctttaatctcacctctgtCcacaatgaagttcctcgtcc	4	14	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	234593419	234593419	C	A	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.1716	p.W572C	1.000	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	47	0	0	84	12	12.5	-	-	-	A	234593419	C	A	234593419	3	1	150	1	0	0	0	0	1	0	0	0	15647	856	30	2	3237	2	TARBP1	1	234593419	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	23736226	234593419	14657202	12	8743										
OR2M4	0	genome.wustl.edu	37	chr1	248402479	248402479	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	actctacccaagatgatcttCagctacttgtctgggaagaa	8	10	4	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	1	248402479	248402479	C	T	SNP	OR2M4	ENST00000306687	human	ensembl	69_37n	1	known	silent	c.249	p.F83	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M4	HGNC	ENSG00000171180	70	0	0	109	22	16.79	-	-	-	T	248402479	C	T	248402479	2	4	150	1	0	0	0	0	0	0	0	1	11085	825	29	2		2	OR2M4	1	248402479	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	13809060	248402479	848142	13	8744										
PCYOX1	0	genome.wustl.edu	37	chr2	70485348	70485348	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cgctgctggggttgtggctgTtgctgtgcagctgcggatgc	18	9	0	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	2	70485348	70485348	T	A	SNP	PCYOX1	ENST00000433351	human	ensembl	69_37n	1	known	missense	c.52	p.L18M	1.000	pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005	18	0	0	18	15	45.45	-	-	-	A	70485348	T	A	70485348	3	1	150	1	0	0	0	0	1	0	0	0	11681	1722	60	5	54	5	PCYOX1	2	70485348	Missense_Mutation	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09		70485348	172714025	14	8745										
ANKRD36B	0	genome.wustl.edu	37	chr2	98177150	98177150	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtcccagatataggtccctcCtttatttctgtggctatatt	7	10	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	2	98177150	98177150	C	G	SNP	ANKRD36B	ENST00000419390	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	64	0	0	92	23	20	-	-	-	G	98177150	C	G	98177150	1	3	150	0	1	0	0	0	0	0	0	0	665	680	24	4		4	ANKRD36B	2	98177150	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	27691802	98177150	145022223	15	8746										
EPC2	0	genome.wustl.edu	37	chr2	149539235	149539235	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	acagggggtatcacagaagaGcagtttcagacacatcagca	11	9	3	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	2	149539235	149539235	G	A	SNP	EPC2	ENST00000258484	human	ensembl	69_37n	1	known	silent	c.1743	p.E581	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999	27	0	0	32	21	39.62	-	-	-	A	149539235	G	A	149539235	2	1	150	1	0	0	0	0	0	0	0	1	5198	962	34	4		4	EPC2	2	149539235	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	51362085	149539235	93660138	16	8747										
AQP12A	0	genome.wustl.edu	37	chr2	241631539	241631539	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gggctggggactttgggcctGacctgctgctcaccctgctc	14	14	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	2	241631539	241631539	G	A	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.208	p.D70N	0.991	superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	69	0	0	46	29	38.67	-	-	-	A	241631539	G	A	241631539	3	1	150	1	0	0	0	0	1	0	0	0	826	1290	45	2	178	2	AQP12A	2	241631539	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	92092304	241631539	1567834	17	8748										
PASK	0	genome.wustl.edu	37	chr2	242046130	242046130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caggctcgcagcggacagaaCtccactttctgaagaaacaa	9	12	1	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	2	242046130	242046130	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.3844	p.V1282I	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	31	0	0	20	13	39.39	-	-	-	T	242046130	C	T	242046130	3	4	150	1	0	0	0	0	1	0	0	0	11545	565	20	4	152	4	PASK	2	242046130	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	414591	242046130	1153243	18	8749										
RPL15	0	genome.wustl.edu	37	chr3	23960937	23960937	+	Frame_Shift_Del	DEL	C	C	-													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ccaccacactattggtggctCtcgccgggcagcttggagaa							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	3	23960937	23960937	C	-	DEL	RPL15	ENST00000307839	human	ensembl	69_37n	1	known	frame_shift_del	c.560	p.S187fs	1.000	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	RPL15	HGNC	ENSG00000174748	49	0	0	31	34	49.28	-	-	-	-	23960937	C	-	23960937	7	5	150	1	0	1	0	1	0	0	0	0	13648	913	32	0	570	0	RPL15	3	23960937	Frame_Shift_Del	DEL	C	TCGA-A7-A56D-01A-11D-A27P-09		23960937	174061493	19	8750	67	2								
RPL15	0	genome.wustl.edu	37	chr3	23960941	23960942	+	Frame_Shift_Del	DEL	CC	CC	-													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cacactattggtggctctcgCcgggcagcttggagaaggcg							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	3	23960941	23960942	CC	-	DEL	RPL15	ENST00000307839	human	ensembl	69_37n	1	known	frame_shift_del	c.564_565	p.R189fs	1.000:1.000	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	RPL15	HGNC	ENSG00000174748	47	0	0	34	33	47.83	-	-	-	-	23960942	CC	-	23960941	7	5	150	1	0	1	0	1	0	0	0	0	13648	726	26	0	574	0	RPL15	3	23960941	Frame_Shift_Del	DEL	CC	TCGA-A7-A56D-01A-11D-A27P-09	4	23960941	174061489	20	8751	67	2								
CRYBG3	0	genome.wustl.edu	37	chr3	97541104	97541104	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggcacagcttctcccggttCttcgctccccgaagtccttc	8	17	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	3	97541104	97541104	C	A	SNP	CRYBG3	ENST00000419587	human	ensembl	69_37n	1	known	missense	c.54	p.F18L	1.000	NULL	NULL	-	no_stop_codon	AC110491.1	Clone_based_ensembl_gene	ENSG00000233280	10	0	0	14	7	33.33	-	-	-	A	97541104	C	A	97541104	3	1	150	1	0	0	0	0	1	0	0	0	3943	928	32	2		2	CRYBG3	3	97541104	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	73580163	97541104	100481326	21	8752										
PCOLCE2	0	genome.wustl.edu	37	chr3	142539868	142539868	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ccatcgcgagtgatggttgtGataacagtgccggctaatac	12	9	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	3	142539868	142539868	G	A	SNP	PCOLCE2	ENST00000485766	human	ensembl	69_37n	-1	putative	missense	c.730	p.H244Y	1.000	superfamily_CUB,smart_CUB	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	-	no_errors	PCOLCE2	HGNC	ENSG00000163710	67	0	0	108	16	12.9	-	-	-	A	142539868	G	A	142539868	3	1	150	1	0	0	0	0	1	0	0	0	11668	1280	45	2	286	2	PCOLCE2	3	142539868	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	44998764	142539868	55482562	22	8753										
IGSF10	0	genome.wustl.edu	37	chr3	151155623	151155623	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gctttaataacagttctgttTgtatacagaccattgattaa	6	6	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	3	151155623	151155623	T	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.6726	p.T2242	0.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	35	0	0	60	16	21.05	-	-	-	C	151155623	T	C	151155623	2	2	150	1	0	0	0	0	0	0	0	1	7651	1799	63	5		5	IGSF10	3	151155623	Silent	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	8615755	151155623	46866807	23	8754										
SLAIN2	0	genome.wustl.edu	37	chr4	48343849	48343849	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gagaagcagaacgaacagctGaggagccgctcgggggccgt	17	10	0	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	4	48343849	48343849	G	A	SNP	SLAIN2	ENST00000264313	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.993	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171	19	0	0	22	7	24.14	-	-	-	A	48343849	G	A	48343849	2	1	150	1	0	0	0	0	0	0	0	1	14455	1277	45	2		2	SLAIN2	4	48343849	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		48343849	142810427	24	8755										
DSPP	0	genome.wustl.edu	37	chr4	88537123	88537123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agcgatagcagcgacagcagCgacagcagcgatagcagtga	14	10	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	4	88537123	88537123	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3309	p.S1103	0.989	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	9	0	0	3	7	70	-	-	-	T	88537123	C	T	88537123	2	4	150	1	0	0	0	0	0	0	0	1	4817	767	27	1		1	DSPP	4	88537123	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	40193274	88537123	102617153	25	8756										
KIAA0947	0	genome.wustl.edu	37	chr5	5464182	5464182	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cgtcgagcagagttgaaactCatcagagtgaagttgctcag	12	8	3	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	5464182	5464182	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.4735	p.H1579Y	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	17	0	0	27	8	22.86	-	-	-	T	5464182	C	T	5464182	3	4	150	1	0	0	0	0	1	0	0	0	8254	826	29	2	4785	2	KIAA0947	5	5464182	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		5464182	175451078	26	8757										
ELOVL7	0	genome.wustl.edu	37	chr5	60060094	60060094	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aaccaccaggtccacggcatGatggtatgatggaatacatg	11	9	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	60060094	60060094	G	A	SNP	ELOVL7	ENST00000425382	human	ensembl	69_37n	-1	known	silent	c.459	p.I153	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL7	HGNC	ENSG00000164181	34	0	0	42	13	23.64	-	-	-	A	60060094	G	A	60060094	2	1	150	1	0	0	0	0	0	0	0	1	5116	1280	45	2		2	ELOVL7	5	60060094	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	54595912	60060094	120855166	27	8758										
NDUFAF2	0	genome.wustl.edu	37	chr5	60241212	60241212	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agtacaagaactggagaggtGaggtggcggcgtgggcagcg	20	6	0	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	60241212	60241212	G	C	SNP	NDUFAF2	ENST00000511107	human	ensembl	69_37n	1	putative	missense	c.130	p.E44Q	1.000	NULL	NULL	-	no_errors	NDUFAF2	HGNC	ENSG00000164182	65	0	0	95	12	11.21	-	-	-	C	60241212	G	C	60241212	3	2	150	1	0	0	0	0	1	0	0	0	10347	1305	45	2		2	NDUFAF2	5	60241212	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	181118	60241212	120674048	28	8759										
PIK3R1	0	genome.wustl.edu	37	chr5	67589149	67589151	+	In_Frame_Del	DEL	ATT	ATT	-													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aggaaagggggaaataacaaAttaatcaaaatatttcatcg							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	67589149	67589151	ATT	-	DEL	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_del	c.1137_1139	p.L380in_frame_del	1.000:1.000:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	35	0	0	28	25	46.3	-	-	-	-	67589151	ATT	-	67589149	7	5	150	1	0	1	0	1	0	0	0	0	11992	98	4	0	1301	0	PIK3R1	5	67589149	In_Frame_Del	DEL	ATT	TCGA-A7-A56D-01A-11D-A27P-09	7347937	67589149	113326111	29	8760										
CKMT2	0	genome.wustl.edu	37	chr5	80548572	80548572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggccgagtgcctcacccccGccatttatgccaagcttcgc	9	17	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	80548572	80548572	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	missense	c.211	p.A71T	0.056	pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	24	0	0	21	16	43.24	-	-	-	A	80548572	G	A	80548572	3	1	150	1	0	0	0	0	1	0	0	0	3481	1087	38	1	217	1	CKMT2	5	80548572	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	12959423	80548572	100366688	30	8761										
FBN2	0	genome.wustl.edu	37	chr5	127644944	127644944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gagccgtgtgcttacctgttCctggagttgggcatggttca	14	9	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	127644944	127644944	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.5348	p.G1783E	1.000	pirsf_Fibrillin,pfam_TB_dom,superfamily_TB_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	48	0	0	58	30	34.09	-	-	-	T	127644944	C	T	127644944	3	4	150	1	0	0	0	0	1	0	0	0	5749	855	30	2	3490	2	FBN2	5	127644944	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	47096372	127644944	53270316	31	8762			1	15		3	3	149	C		1.801386e-07
FBN2	0	genome.wustl.edu	37	chr5	127644963	127644963	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcctggagttgggcatggttCacaaggtttgttccaggctt	13	8	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	127644963	127644963	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.5329	p.E1777K	1.000	pirsf_Fibrillin,pfam_TB_dom,superfamily_TB_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	49	0	0	54	30	35.71	-	-	-	T	127644963	C	T	127644963	3	4	150	1	0	0	0	0	1	0	0	0	5749	835	29	2	3509	2	FBN2	5	127644963	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	19	127644963	53270297	32	8763			1	15		3	3	149	C		1.801386e-07
FBN2	0	genome.wustl.edu	37	chr5	127645092	127645092	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gcaaaagctttttctcatgtCtatataaagaaaaacaaaga	5	6	2	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	127645092	127645092	C	G	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	splice_site	c.5201-1	e41-1	1.000	-	-	-	no_errors	FBN2	HGNC	ENSG00000138829	19	0	0	14	10	41.67	-	-	-	G	127645092	C	G	127645092	5	3	150	1	0	0	0	0	0	0	1	0	5749	927	32	2	3638	2	FBN2	5	127645092	Splice_Site	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	129	127645092	53270168	33	8764			1	15		3	3	149	C		1.801386e-07
IK	0	genome.wustl.edu	37	chr5	140038686	140038686	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gaacgagagcgagagcgggaCcgagagagagaagaggaaaa	18	5	0	5			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	140038686	140038686	C	G	SNP	IK	ENST00000417647	human	ensembl	69_37n	1	known	missense	c.1113	p.D371E	0.973	NULL	pfam_RED_N,pfam_RED_C	-	no_errors	IK	HGNC	ENSG00000113141	41	0	0	43	19	30.65	-	-	-	G	140038686	C	G	140038686	3	3	150	1	0	0	0	0	1	0	0	0	7662	506	18	4	1159	4	IK	5	140038686	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	12393594	140038686	40876574	34	8765										
DIAPH1	0	genome.wustl.edu	37	chr5	140960344	140960344	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gcggtagaatacaaagagcaGaaagcagcttagctgcatca	11	8	1	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	140960344	140960344	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	missense	c.791	p.S264F	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	36	0	0	26	13	33.33	-	-	-	A	140960344	G	A	140960344	3	1	150	1	0	0	0	0	1	0	0	0	4554	942	33	2	3111	2	DIAPH1	5	140960344	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	921658	140960344	39954916	35	8766										
PDE6A	0	genome.wustl.edu	37	chr5	149294525	149294525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cgggatgactttgatgtcctCtttgccatgcaggatgtagt	12	8	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	5	149294525	149294525	C	G	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	missense	c.979	p.E327Q	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	46	0	0	72	24	25	-	-	-	G	149294525	C	G	149294525	3	3	150	1	0	0	0	0	1	0	0	0	11718	922	32	2	1671	2	PDE6A	5	149294525	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	8334181	149294525	31620735	36	8767										
KIF13A	0	genome.wustl.edu	37	chr6	17834206	17834206	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agctacctgtgctatctcttCtgtttttctcagcttctctt	5	12	4	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	17834206	17834206	C	T	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.1252	p.E418K	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	57	0	0	96	14	12.73	-	-	-	T	17834206	C	T	17834206	3	4	150	1	0	0	0	0	1	0	0	0	8326	922	32	2	4302	2	KIF13A	6	17834206	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		17834206	153280861	37	8768										
XPO5	0	genome.wustl.edu	37	chr6	43541244	43541244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cgtgttccaggatctgaaggCcaaaatgtctgacgatggca	12	9	2	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	43541244	43541244	C	G	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.200	p.G67A	1.000	superfamily_ARM-type_fold,smart_Importin-beta_N	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	39	0	0	54	11	16.92	-	-	-	G	43541244	C	G	43541244	3	3	150	1	0	0	0	0	1	0	0	0	17544	739	26	4	3538	4	XPO5	6	43541244	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	25707038	43541244	127573823	38	8769										
TMEM30A	0	genome.wustl.edu	37	chr6	75969199	75969199	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ttgccaatgagaaacaattcTaatgtatctaaacacaagca	5	8	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	75969199	75969199	T	G	SNP	TMEM30A	ENST00000230461	human	ensembl	69_37n	-1	known	missense	c.549	p.L183F	1.000	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	-	no_errors	TMEM30A	HGNC	ENSG00000112697	28	0	0	43	13	23.21	-	-	-	G	75969199	T	G	75969199	3	3	150	1	0	0	0	0	1	0	0	0	16248	1519	53	5	548	5	TMEM30A	6	75969199	Missense_Mutation	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	32427955	75969199	95145868	39	8770										
HACE1	0	genome.wustl.edu	37	chr6	105239459	105239459	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gggggaggatggaccaattcGaaagacgtgacaaaacattc	13	7	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	105239459	105239459	G	A	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	nonsense	c.994	p.R332*	1.000	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	38	0	0	51	19	27.14	-	-	-	A	105239459	G	A	105239459	4	1	150	1	0	0	0	0	0	1	0	0	6991	1066	37	1	1791	1	HACE1	6	105239459	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	29270260	105239459	65875608	40	8771										
LAMA2	0	genome.wustl.edu	37	chr6	129722406	129722406	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tgaaagcggcaaacgacaaaTtgagaacactttaaaagagg	10	6	0	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	129722406	129722406	T	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.5483	p.I1828T	1.000	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	21	0	0	24	6	20	-	-	-	C	129722406	T	C	129722406	3	2	150	1	0	0	0	0	1	0	0	0	8660	1493	52	5	5633	5	LAMA2	6	129722406	Missense_Mutation	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	24482947	129722406	41392661	41	8772										
MAP7	0	genome.wustl.edu	37	chr6	136681924	136681926	+	In_Frame_Del	DEL	CTT	CTT	-													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tgcttcttcacgaacgcgagCttcttcttctttctgaaaac							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	6	136681924	136681926	CTT	-	DEL	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	in_frame_del	c.1780_1778	p.E593in_frame_del	1.000:1.000:1.000	pfam_E-MAP-115	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	11	0	0	36	18	33.33	-	-	-	-	136681926	CTT	-	136681924	7	5	150	1	0	1	0	1	0	0	0	0	9337	797	28	0	559	0	MAP7	6	136681924	In_Frame_Del	DEL	CTT	TCGA-A7-A56D-01A-11D-A27P-09	6959518	136681924	34433143	42	8773										
OSBPL3	0	genome.wustl.edu	37	chr7	24905791	24905791	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ggaaacatggcaatttcattCtgacgatacattctgtggtg	10	7	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	24905791	24905791	C	T	SNP	OSBPL3	ENST00000313367	human	ensembl	69_37n	-1	known	silent	c.447	p.Q149	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	35	0	0	52	7	11.86	-	-	-	T	24905791	C	T	24905791	2	4	150	1	0	0	0	0	0	0	0	1	11352	912	32	2		2	OSBPL3	7	24905791	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		24905791	134232872	43	8774										
GPR141	0	genome.wustl.edu	37	chr7	37780043	37780043	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcctcttgcgatcctatagtGacaccccacttaatcagcct	5	15	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780043	37780043	G	A	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	silent	c.48	p.V16	0.017	NULL	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	35	0	0	72	27	27.27	-	-	-	A	37780043	G	A	37780043	2	1	150	1	0	0	0	0	0	0	0	1	6699	1277	45	2		2	GPR141	7	37780043	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	12874252	37780043	121358620	44	8775			2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780196	37780196	+	Silent	SNP	G	G	A													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtccacagcgtttttctgctGacagtgccatttcgcttgac							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780196	37780196	G	A	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	silent	c.201	p.L67	0.999	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	59	0	0	65	20	23.26	-	-	-	A	37780196	G	A	37780196	2	1	150	1	0	0	0	0	0	0	0	1	6699	1277	45	2		2	GPR141	7	37780196	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	153	37780196	121358467	45	8776	68	2	2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780202	37780202	+	Silent	SNP	G	G	A													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agcgtttttctgctgacagtGccatttcgcttgacctacct							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780202	37780202	G	A	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	silent	c.207	p.V69	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	58	0	0	66	20	23.26	-	-	-	A	37780202	G	A	37780202	2	1	150	1	0	0	0	0	0	0	0	1	6699	1306	46	4		4	GPR141	7	37780202	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	6	37780202	121358461	46	8777	68	2	2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780232	37780232	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ttgacctacctcatcaagaaGacttggatgtttgggctgcc	10	10	2	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780232	37780232	G	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.237	p.K79N	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	56	0	0	72	18	20	-	-	-	C	37780232	G	C	37780232	3	2	150	1	0	0	0	0	1	0	0	0	6699	933	33	2	239	2	GPR141	7	37780232	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	30	37780232	121358431	47	8778			2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780359	37780359	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcatcttcttcaagtgcaaaGacaaagtggaattctacaga	7	8	5	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780359	37780359	G	T	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.364	p.D122Y	0.828	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	51	0	0	71	19	21.11	-	-	-	T	37780359	G	T	37780359	3	4	150	1	0	0	0	0	1	0	0	0	6699	942	33	2	366	2	GPR141	7	37780359	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	127	37780359	121358304	48	8779			2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780730	37780730	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cttccctaccagttctttagGatctattacttgaatgttgt	6	9	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780730	37780730	G	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.735	p.R245S	0.998	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	53	0	0	87	26	23.01	-	-	-	C	37780730	G	C	37780730	3	2	150	1	0	0	0	0	1	0	0	0	6699	1165	41	2	737	2	GPR141	7	37780730	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	371	37780730	121357933	49	8780			2	16		7	6	835	N	G	3.700713e-15
GPR141	0	genome.wustl.edu	37	chr7	37780877	37780877	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agccattggtttaagcaaaaGataattggcttatggaattg	10	4	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	37780877	37780877	G	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.882	p.K294N	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	32	0	0	64	11	14.67	-	-	-	C	37780877	G	C	37780877	3	2	150	1	0	0	0	0	1	0	0	0	6699	933	33	2	884	2	GPR141	7	37780877	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	147	37780877	121357786	50	8781			2	16		7	6	835	N	G	3.700713e-15
VPS41	0	genome.wustl.edu	37	chr7	38798012	38798012	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	atctttcttcaaatgatcccGaactgcttgaactatgactg	6	10	3	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	38798012	38798012	G	T	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	silent	c.1492	p.R498	0.994	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	19	0	0	13	3	18.75	-	-	-	T	38798012	G	T	38798012	2	4	150	1	0	0	0	0	0	0	0	1	17307	1057	37	3		3	VPS41	7	38798012	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	1017135	38798012	120340651	51	8782										
URGCP	0	genome.wustl.edu	37	chr7	43916211	43916211	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gccccacacgggtgccccatCagacagggctgcccacagca	11	18	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43916211	43916211	C	G	SNP	URGCP	ENST00000497914	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	URGCP	HGNC	ENSG00000106608	26	0	0	79	32	28.83	-	-	-	G	43916211	C	G	43916211	1	3	150	0	1	0	0	0	0	0	0	0	17123	841	29	2		2	URGCP	7	43916211	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	5118199	43916211	115222452	52	8783			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43916314	43916314	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tgctggatgtttttgttttgGttcgacaagccgttcctgat	11	7	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43916314	43916314	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.2748	p.N916K	0.987	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	74	0	0	182	49	21.21	-	-	-	C	43916314	G	C	43916314	3	2	150	1	0	0	0	0	1	0	0	0	17123	1252	44	4	51	4	URGCP	7	43916314	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	103	43916314	115222349	53	8784			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43916437	43916437	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cacaggcctgggatgtgccaGatgtgctgcttctcagggtc	14	11	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43916437	43916437	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.2625	p.I875M	0.017	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	52	0	0	133	44	24.86	-	-	-	C	43916437	G	C	43916437	3	2	150	1	0	0	0	0	1	0	0	0	17123	932	33	2	174	2	URGCP	7	43916437	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	123	43916437	115222226	54	8785			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43916484	43916484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ggccaggcctgccagtgcccGgaagccgtcgccctgtttct	13	16	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43916484	43916484	G	A	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.2578	p.R860W	0.865	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	42	0	0	100	34	25.37	-	-	-	A	43916484	G	A	43916484	3	1	150	1	0	0	0	0	1	0	0	0	17123	1115	39	1	221	1	URGCP	7	43916484	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	47	43916484	115222179	55	8786			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43917613	43917613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgtaggcatccgagtctttGattttcctggtaatcctctc	8	11	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43917613	43917613	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.1449	p.I483M	0.820	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	76	0	0	181	25	12.14	-	-	-	C	43917613	G	C	43917613	3	2	150	1	0	0	0	0	1	0	0	0	17123	1280	45	2	1350	2	URGCP	7	43917613	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	1129	43917613	115221050	56	8787			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43917817	43917817	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtgctgctgacctttaccagGacatgtgagtggtctatttt	11	8	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43917817	43917817	G	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	silent	c.1245	p.V415	0.054	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	99	0	0	245	37	13.12	-	-	-	T	43917817	G	T	43917817	2	4	150	1	0	0	0	0	0	0	0	1	17123	1161	41	2		2	URGCP	7	43917817	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	204	43917817	115220846	57	8788			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43917897	43917897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gttgcgcttcccacggtaggGactcaggatgaagtagtatt	13	8	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43917897	43917897	G	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389T	0.987	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	81	0	0	164	25	13.23	-	-	-	T	43917897	G	T	43917897	3	4	150	1	0	0	0	0	1	0	0	0	17123	1174	41	2	1634	2	URGCP	7	43917897	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	80	43917897	115220766	58	8789			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43917967	43917967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aatttgtattccttcttactGatattgtcagtcaatataaa	4	6	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43917967	43917967	G	A	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	silent	c.1095	p.I365	0.873	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	32	0	0	82	16	16.16	-	-	-	A	43917967	G	A	43917967	2	1	150	1	0	0	0	0	0	0	0	1	17123	1280	45	2		2	URGCP	7	43917967	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	70	43917967	115220696	59	8790			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43918063	43918063	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcacctctcaggttcagaaaGgccacaggttctgggaaaat	10	10	4	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-11A-72D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	dd52f0b9-0b32-4ecd-81fb-8abeb0f9cb0d	7	43918063	43918063	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	silent	c.999	p.A333	0.982	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	34	0	0	46	6	11.54	-	-	-	C	43918063	G	C	43918063	2	2	150	1	0	0	0	0	0	0	0	1	17123	987	35	4		4	URGCP	7	43918063	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	96	43918063	115220600	60	8791			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43918380	43918380	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gccccgcatggcccacagcaGaaatgtatggtagtggttct	12	11	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43918380	43918380	G	A	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	silent	c.682	p.L228	0.998	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	74	0	0	224	47	17.34	-	-	-	A	43918380	G	A	43918380	2	1	150	1	0	0	0	0	0	0	0	1	17123	933	33	2		2	URGCP	7	43918380	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	317	43918380	115220283	61	8792			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43918403	43918403	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	atgtatggtagtggttctccGagtcaggcaacacgagtggg	15	7	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43918403	43918403	G	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	nonsense	c.659	p.S220*	0.971	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	76	0	0	234	54	18.75	-	-	-	T	43918403	G	T	43918403	4	4	150	1	0	0	0	0	0	1	0	0	17123	1059	37	3	2140	3	URGCP	7	43918403	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	23	43918403	115220260	62	8793			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43918481	43918481	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cttgttgcaggaaactgtctGaggagagcagcagggcacag	15	8	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43918481	43918481	G	C	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	nonsense	c.581	p.S194*	0.997	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	60	0	0	209	48	18.68	-	-	-	C	43918481	G	C	43918481	4	2	150	1	0	0	0	0	0	1	0	0	17123	1294	45	2	2218	2	URGCP	7	43918481	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	78	43918481	115220182	63	8794			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
URGCP	0	genome.wustl.edu	37	chr7	43918553	43918553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gggtgggcagctcagaaaagGaataaatgtcggcagcaagg	16	6	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	43918553	43918553	G	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.509	p.S170Y	0.973	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	55	0	0	155	35	18.32	-	-	-	T	43918553	G	T	43918553	3	4	150	1	0	0	0	0	1	0	0	0	17123	1174	41	2	2290	2	URGCP	7	43918553	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	72	43918553	115220110	64	8795			3	17	6135334	13	13	2343	N	G_C	1.132461e-33
ABCA13	0	genome.wustl.edu	37	chr7	48319379	48319379	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caccggaaagaatgtcacatCagaaaaagaagagagaacca	9	8	2	5			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	48319379	48319379	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	nonsense	c.8588	p.S2863*	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	32	0	0	56	25	30.86	-	-	-	G	48319379	C	G	48319379	4	3	150	1	0	0	0	0	0	1	0	0	31	838	29	2	8487	2	ABCA13	7	48319379	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	4400826	48319379	110819284	65	8796										
WBSCR27	0	genome.wustl.edu	37	chr7	73255528	73255528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtacagcagggtggccacatCctggggaaagagtgccgggc	17	10	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-11A-72D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	dd52f0b9-0b32-4ecd-81fb-8abeb0f9cb0d	7	73255528	73255528	C	T	SNP	WBSCR27	ENST00000297873	human	ensembl	69_37n	-1	known	missense	c.124	p.D42N	1.000	pfam_UbiE/COQ5_MeTrFase	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase	-	no_errors	WBSCR27	HGNC	ENSG00000165171	63	0	0	47	19	28.79	-	-	-	T	73255528	C	T	73255528	3	4	150	1	0	0	0	0	1	0	0	0	17363	869	30	2	629	2	WBSCR27	7	73255528	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	24936149	73255528	85883135	66	8797										
EIF4H	0	genome.wustl.edu	37	chr7	73588725	73588725	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agacggcaaatggcggacttCgacacctacgacgatcgggc	13	12	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	73588725	73588725	C	T	SNP	EIF4H	ENST00000265753	human	ensembl	69_37n	1	known	silent	c.12	p.F4	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682	60	0	0	75	20	21.05	-	-	-	T	73588725	C	T	73588725	2	4	150	1	0	0	0	0	0	0	0	1	5076	883	31	1		1	EIF4H	7	73588725	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	333197	73588725	85549938	67	8798										
LMTK2	0	genome.wustl.edu	37	chr7	97833267	97833267	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tatttctaggtggtggctttGagtgggatgatgacttctcc	13	6	2	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	97833267	97833267	G	C	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.4252	p.E1418Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	47	0	0	49	11	18.03	-	-	-	C	97833267	G	C	97833267	3	2	150	1	0	0	0	0	1	0	0	0	8915	1291	45	2	4302	2	LMTK2	7	97833267	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	24244542	97833267	61305396	68	8799										
EPHB4	0	genome.wustl.edu	37	chr7	100416233	100416233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcaagctgctgggtgaggacCgcgtcacccggatgtcagac	14	12	3	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	100416233	100416233	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	missense	c.1331	p.R444Q	0.710	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	48	0	0	47	8	14.55	-	-	-	T	100416233	C	T	100416233	3	4	150	1	0	0	0	0	1	0	0	0	5214	652	23	1	1676	1	EPHB4	7	100416233	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	2582966	100416233	58722430	69	8800										
THAP5	0	genome.wustl.edu	37	chr7	108204868	108204868	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gcagtaagaatgttcgatttGtaaaacttctgtcccatagt	8	7	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	7	108204868	108204868	G	C	SNP	THAP5	ENST00000415914	human	ensembl	69_37n	-1	known	missense	c.955	p.Q319E	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP5	HGNC	ENSG00000177683	47	0	0	70	18	20.45	-	-	-	C	108204868	G	C	108204868	3	2	150	1	0	0	0	0	1	0	0	0	15942	1386	48	4	236	4	THAP5	7	108204868	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	7788635	108204868	50933795	70	8801										
CPSF1	0	genome.wustl.edu	37	chr8	145623698	145623698	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	acccccccacctacctccttCcagcaggcggatgcccagtg	8	20	0	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	8	145623698	145623698	C	G	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.1888	p.E630Q	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	106	0	0	109	16	12.8	-	-	-	G	145623698	C	G	145623698	3	3	150	1	0	0	0	0	1	0	0	0	3854	864	30	2	2523	2	CPSF1	8	145623698	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		145623698	740324	71	8802										
RPS6	0	genome.wustl.edu	37	chr9	19379494	19379494	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcaacttttaccttccattcTtcacccagagcgtcagcagc	5	15	4	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	9	19379494	19379494	T	C	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	silent	c.129	p.E43	0.992	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	47	0	0	65	18	21.69	-	-	-	C	19379494	T	C	19379494	2	2	150	1	0	0	0	0	0	0	0	1	13735	1606	56	5		5	RPS6	9	19379494	Silent	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09		19379494	121833937	72	8803										
TEX10	0	genome.wustl.edu	37	chr9	103092280	103092281	+	Frame_Shift_Ins	INS	-	-	A													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tgttcagttgcttactatttINSagcctagagccatcttcaag							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	9	103092280	103092281	-	A	INS	TEX10	ENST00000374902	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1422_1421	p.N475fs	0.997:1.000	superfamily_ARM-type_fold	pfam_IPI1-like_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	51	0	0	53	27	33.75	-	-	-	A	103092281	-	A	103092280	7	5	150	1	0	1	1	0	0	0	0	0	15867	1741	61	0	1407	0	TEX10	9	103092280	Frame_Shift_Ins	INS	-	TCGA-A7-A56D-01A-11D-A27P-09	83712786	103092280	38121151	73	8804										
LRSAM1	0	genome.wustl.edu	37	chr9	130223502	130223502	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cagctcccacgttccattggGaacctgacccagctccagac	8	17	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	9	130223502	130223502	G	A	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	silent	c.372	p.G124	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	62	0	0	63	16	20.25	-	-	-	A	130223502	G	A	130223502	2	1	150	1	0	0	0	0	0	0	0	1	9109	1161	41	2		2	LRSAM1	9	130223502	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	27131222	130223502	10989929	74	8805										
MCM10	0	genome.wustl.edu	37	chr10	13222545	13222545	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggccagagagaagctggaaGaaatagattgggtgacattt	14	4	0	5			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	10	13222545	13222545	G	A	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.871	p.E291K	1.000	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	58	0	0	80	9	10.11	-	-	-	A	13222545	G	A	13222545	3	1	150	1	0	0	0	0	1	0	0	0	9456	943	33	2	893	2	MCM10	10	13222545	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		13222545	122312202	75	8806										
JMJD1C	0	genome.wustl.edu	37	chr10	64958450	64958451	+	Frame_Shift_Ins	INS	-	-	AT													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggtcaggagaagagaaaccINSatctattctaactactccgt							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	10	64958450	64958451	-	AT	INS	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5314_5313	p.G1771fs	1.000:1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	28	0	0	18	5	21.74	-	-	-	AT	64958451	-	AT	64958450	7	5	150	1	0	1	1	0	0	0	0	0	8004	594	21	0	2368	0	JMJD1C	10	64958450	Frame_Shift_Ins	INS	-	TCGA-A7-A56D-01A-11D-A27P-09	51735905	64958450	70576297	76	8807										
CTBP2	0	genome.wustl.edu	37	chr10	126681266	126681266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtcagttccttttctcacctGtatgtggcaccattgagctc	8	12	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	10	126681266	126681266	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	silent	c.2775	p.Y925	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	39	0	0	63	15	19.23	-	-	-	A	126681266	G	A	126681266	2	1	150	1	0	0	0	0	0	0	0	1	4030	1372	48	4		4	CTBP2	10	126681266	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	61722816	126681266	8853481	77	8808										
MUC5B	0	genome.wustl.edu	37	chr11	1255768	1255768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gggccccacagttcagcacaCactgcgtgtccggctgtgtc	12	15	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	11	1255768	1255768	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.2497	p.H833Y	0.003	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	100	0	0	37	14	27.45	-	-	-	T	1255768	C	T	1255768	3	4	150	1	0	0	0	0	1	0	0	0	10051	478	17	4	2579	4	MUC5B	11	1255768	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		1255768	133750748	78	8809										
UCP2	0	genome.wustl.edu	37	chr11	73687705	73687705	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cctgtcatgaggttggctttCaggagggcatccttgatgag	14	8	2	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	11	73687705	73687705	C	T	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	silent	c.615	p.L205	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	38	0	0	50	11	18.03	-	-	-	T	73687705	C	T	73687705	2	4	150	1	0	0	0	0	0	0	0	1	17028	813	29	2		2	UCP2	11	73687705	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	72431937	73687705	61318811	79	8810										
C1QTNF5	0	genome.wustl.edu	37	chr11	119213390	119213390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtcacacatccactgcacacCcttacaccctcctgcctggc	5	20	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	11	119213390	119213390	C	T	SNP	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	missense	c.1303	p.G435S	0.013	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	47	0	0	15	15	50	-	-	-	T	119213390	C	T	119213390	3	4	150	1	0	0	0	0	1	0	0	0	1985	623	22	4		4	C1QTNF5	11	119213390	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	45525685	119213390	15793126	80	8811										
LEPREL2	0	genome.wustl.edu	37	chr12	6947182	6947182	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgttcttcacggagcccaaCgccctcactgtcacggtgcg	10	16	4	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	6947182	6947182	C	T	SNP	LEPREL2	ENST00000396725	human	ensembl	69_37n	1	known	silent	c.1887	p.N629	0.801	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	LEPREL2	HGNC	ENSG00000110811	40	0	0	37	24	39.34	-	-	-	T	6947182	C	T	6947182	2	4	150	1	0	0	0	0	0	0	0	1	8785	535	19	1		1	LEPREL2	12	6947182	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		6947182	126904713	81	8812										
ERBB3	0	genome.wustl.edu	37	chr12	56478957	56478957	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gcgccagctccgcttgactcAgctcaccggtcagttcccga	10	17	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	56478957	56478957	A	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.413	p.Q138L	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	85	0	0	63	28	30.77	-	-	-	T	56478957	A	T	56478957	3	4	150	1	0	0	0	0	1	0	0	0	5245	188	7	5	423	5	ERBB3	12	56478957	Missense_Mutation	SNP	A	TCGA-A7-A56D-01A-11D-A27P-09	49531775	56478957	77372938	82	8813										
PPFIA2	0	genome.wustl.edu	37	chr12	81839411	81839411	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caacttcactggatactcctGagggagactgggcttgccgt	12	11	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-11A-72D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	dd52f0b9-0b32-4ecd-81fb-8abeb0f9cb0d	12	81839411	81839411	G	C	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	nonsense	c.494	p.S165*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	72	0	0	66	29	30.53	-	-	-	C	81839411	G	C	81839411	4	2	150	1	0	0	0	0	0	1	0	0	12383	1294	45	2	3387	2	PPFIA2	12	81839411	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	25360454	81839411	52012484	83	8814										
EPYC	0	genome.wustl.edu	37	chr12	91371965	91371965	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcctcctcctcttcctcttcCtgggccttctcaggctgtgg	8	17	3	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	91371965	91371965	C	G	SNP	EPYC	ENST00000261172	human	ensembl	69_37n	-1	known	missense	c.240	p.Q80H	0.002	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	33	0	0	60	13	17.81	-	-	-	G	91371965	C	G	91371965	3	3	150	1	0	0	0	0	1	0	0	0	5238	680	24	4	748	4	EPYC	12	91371965	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	9532554	91371965	42479930	84	8815										
GNPTAB	0	genome.wustl.edu	37	chr12	102224414	102224414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gagcccatacctgtgggacaGgcaggtataggtctgtctct	13	10	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	102224414	102224414	G	A	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	silent	c.40	p.L14	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	97	0	0	91	41	31.06	-	-	-	A	102224414	G	A	102224414	2	1	150	1	0	0	0	0	0	0	0	1	6597	991	35	4		4	GNPTAB	12	102224414	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	10852449	102224414	31627481	85	8816										
PITPNM2	0	genome.wustl.edu	37	chr12	123497206	123497206	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ggagagaggttgaacacgtcGgggttttctccagcatcagt	14	8	2	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	123497206	123497206	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	69_37n	-1	known	silent	c.369	p.P123	0.000	pfam_PI_transfer,prints_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975	96	0	0	116	54	31.76	-	-	-	A	123497206	G	A	123497206	2	1	150	1	0	0	0	0	0	0	0	1	12025	1103	39	1		1	PITPNM2	12	123497206	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	21272792	123497206	10354689	86	8817										
DDX51	0	genome.wustl.edu	37	chr12	132626138	132626138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cacgatgtcagccaagcagcGgtacccatcagctctacaga	9	14	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	132626138	132626138	G	A	SNP	DDX51	ENST00000397333	human	ensembl	69_37n	-1	known	missense	c.1009	p.R337C	0.990	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163	29	0	0	22	14	38.89	-	-	-	A	132626138	G	A	132626138	3	1	150	1	0	0	0	0	1	0	0	0	4400	1116	39	1	1027	1	DDX51	12	132626138	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	9128932	132626138	1225757	87	8818										
ANKLE2	0	genome.wustl.edu	37	chr12	133312092	133312092	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tttccagagcttgcgaaaatCttctgcctatgaagaaaaaa	7	8	2	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	12	133312092	133312092	C	T	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.1600	p.D534N	1.000	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	25	0	0	21	6	22.22	-	-	-	T	133312092	C	T	133312092	3	4	150	1	0	0	0	0	1	0	0	0	633	913	32	2	1236	2	ANKLE2	12	133312092	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	685954	133312092	539803	88	8819										
THTPA	0	genome.wustl.edu	37	chr14	24026483	24026483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgaagtaccaactgccctaGagaagatccacaggctcagc	9	13	1	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	14	24026483	24026483	G	C	SNP	THTPA	ENST00000288014	human	ensembl	69_37n	1	known	missense	c.517	p.E173Q	1.000	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	-	no_errors	THTPA	HGNC	ENSG00000259431	44	0	0	50	13	20.63	-	-	-	C	24026483	G	C	24026483	3	2	150	1	0	0	0	0	1	0	0	0	15976	943	33	2	519	2	THTPA	14	24026483	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		24026483	83323057	89	8820										
RALGAPA1	0	genome.wustl.edu	37	chr14	36221341	36221341	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aaatcccctttcttggttttCtttgttcttccattctaaac	3	11	4	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	14	36221341	36221341	C	G	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.691	p.E231Q	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	40	0	0	64	29	31.18	-	-	-	G	36221341	C	G	36221341	3	3	150	1	0	0	0	0	1	0	0	0	13096	922	32	2	5704	2	RALGAPA1	14	36221341	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	12194858	36221341	71128199	90	8821										
PTPN21	0	genome.wustl.edu	37	chr14	88974301	88974301	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cctgctagctgaattgcttgTtctaaggtacaaggaatact	9	8	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	14	88974301	88974301	T	C	SNP	PTPN21	ENST00000328736	human	ensembl	69_37n	-1	known	silent	c.414	p.E138	0.999	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,prints_Band_41_fam	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778	22	0	0	32	18	36	-	-	-	C	88974301	T	C	88974301	2	2	150	1	0	0	0	0	0	0	0	1	12869	1722	60	5		5	PTPN21	14	88974301	Silent	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	52752960	88974301	18375239	91	8822										
GABRG3	0	genome.wustl.edu	37	chr15	27725920	27725920	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agaaacaccacagaaatcgtGacaacgtctgcaggtaggaa	10	9	1	3			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	15	27725920	27725920	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	69_37n	1	known	silent	c.699	p.V233	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	20	0	0	24	8	25	-	-	-	A	27725920	G	A	27725920	2	1	150	1	0	0	0	0	0	0	0	1	6222	1277	45	2		2	GABRG3	15	27725920	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		27725920	74805472	92	8823										
TSC2	0	genome.wustl.edu	37	chr16	2134598	2134598	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cgcccagtggcctccggcccCgaggttacaccatctccgac	10	19	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	16	2134598	2134598	C	T	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	nonsense	c.4375	p.R1459*	0.992	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	84	0	0	57	25	30.49	-	-	-	T	2134598	C	T	2134598	4	4	150	1	0	0	0	0	0	1	0	0	16702	644	23	1	4505	1	TSC2	16	2134598	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		2134598	88220155	93	8824										
FHOD1	0	genome.wustl.edu	37	chr16	67281298	67281298	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cggctctccgtccccgcggtCttccccgcccgccatggctc	10	22	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	16	67281298	67281298	C	A	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	missense	c.16	p.D6Y	0.003	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	55	0	0	70	9	11.39	-	-	-	A	67281298	C	A	67281298	3	1	150	1	0	0	0	0	1	0	0	0	5928	913	32	2	3566	2	FHOD1	16	67281298	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	65146700	67281298	23073455	94	8825										
TP53	0	genome.wustl.edu	37	chr17	7577027	7577027	+	Frame_Shift_Del	DEL	G	G	-													0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgcttgcttacctcgcttaGtgctccctgggggcagctcg							TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	7577027	7577027	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.911	p.T304fs	0.689	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	82	0	0	41	29	39.73	-	-	-	-	7577027	G	-	7577027	7	5	150	1	0	1	0	1	0	0	0	0	16477	1029	36	0	375	0	TP53	17	7577027	Frame_Shift_Del	DEL	G	TCGA-A7-A56D-01A-11D-A27P-09		7577027	73618183	95	8826										
TRAF4	0	genome.wustl.edu	37	chr17	27076034	27076034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctggccatgatgtgtgccctGgtgagccggcaacggcagga	16	11	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	27076034	27076034	G	A	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	silent	c.852	p.L284	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	57	0	0	174	31	15.12	-	-	-	A	27076034	G	A	27076034	2	1	150	1	0	0	0	0	0	0	0	1	16539	1335	47	4		4	TRAF4	17	27076034	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	19499007	27076034	54119176	96	8827										
KRTAP4-1	0	genome.wustl.edu	37	chr17	39340673	39340673	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tccaatatgaggttcaacaaGaggatccacagcagctgggg	12	9	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	39340673	39340673	G	A	SNP	KRTAP4-1	ENST00000398472	human	ensembl	69_37n	-1	known	missense	c.434	p.S145F	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-1	HGNC	ENSG00000198443	105	0	0	79	47	37.3	-	-	-	A	39340673	G	A	39340673	3	1	150	1	0	0	0	0	1	0	0	0	8602	942	33	2	10	2	KRTAP4-1	17	39340673	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	12264639	39340673	41854537	97	8828										
PLEKHH3	0	genome.wustl.edu	37	chr17	40821596	40821596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agagggacatggccttggctCccaagcccaggcacagcttc	12	14	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	40821596	40821596	C	T	SNP	PLEKHH3	ENST00000591022	human	ensembl	69_37n	-1	known	missense	c.2057	p.G686E	1.000	pfscan_FERM_domain	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137	52	0	0	43	23	34.85	-	-	-	T	40821596	C	T	40821596	3	4	150	1	0	0	0	0	1	0	0	0	12152	855	30	2	332	2	PLEKHH3	17	40821596	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	1480923	40821596	40373614	98	8829										
SLC25A39	0	genome.wustl.edu	37	chr17	42398807	42398807	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caagactatgctcacggcggGccagcgcgccagccaccatg	12	16	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	42398807	42398807	G	C	SNP	SLC25A39	ENST00000377095	human	ensembl	69_37n	-1	known	missense	c.512	p.A171G	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A39	HGNC	ENSG00000013306	44	0	0	22	18	45	-	-	-	C	42398807	G	C	42398807	3	2	150	1	0	0	0	0	1	0	0	0	14592	1203	42	4	591	4	SLC25A39	17	42398807	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	1577211	42398807	38796403	99	8830										
SMARCD2	0	genome.wustl.edu	37	chr17	61910318	61910318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ttaggtcaggcgaattcccaGcacctgttccagttcctgcc	9	14	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	61910318	61910318	G	A	SNP	SMARCD2	ENST00000450364	human	ensembl	69_37n	-1	novel	missense	c.674	p.A225V	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMARCD2	HGNC	ENSG00000108604	55	0	0	134	31	18.79	-	-	-	A	61910318	G	A	61910318	3	1	150	1	0	0	0	0	1	0	0	0	14867	962	34	4	23	4	SMARCD2	17	61910318	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	19511511	61910318	19284892	100	8831										
SCN4A	0	genome.wustl.edu	37	chr17	62025337	62025337	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	catttgagcagcatctccatGatgaagatgtaggtgaagac	11	7	1	6			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	62025337	62025337	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.3231	p.I1077	0.836	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	82	0	0	203	195	48.99	-	-	-	A	62025337	G	A	62025337	2	1	150	1	0	0	0	0	0	0	0	1	14008	1280	45	2		2	SCN4A	17	62025337	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	115019	62025337	19169873	101	8832										
SCN4A	0	genome.wustl.edu	37	chr17	62026001	62026001	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgctgagcaggatcatgaaGacaatgaaggtctcgaacca	11	9	2	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	62026001	62026001	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.3114	p.V1038	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	44	0	0	103	88	46.07	-	-	-	A	62026001	G	A	62026001	2	1	150	1	0	0	0	0	0	0	0	1	14008	929	33	2		2	SCN4A	17	62026001	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	664	62026001	19169209	102	8833										
SMURF2	0	genome.wustl.edu	37	chr17	62551044	62551044	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggtttaagttcatgctgaaTaatttcaccatatgcattat	6	6	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	62551044	62551044	T	C	SNP	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	missense	c.1678	p.I560V	0.999	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	35	0	0	24	43	64.18	-	-	-	C	62551044	T	C	62551044	3	2	150	1	0	0	0	0	1	0	0	0	14909	1406	49	5	588	5	SMURF2	17	62551044	Missense_Mutation	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	525043	62551044	18644166	103	8834										
NAT9	0	genome.wustl.edu	37	chr17	72769777	72769777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gctccagggtcagcggctccGaggctgtcaaacgctgcagc	14	14	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	17	72769777	72769777	G	A	SNP	NAT9	ENST00000357814	human	ensembl	69_37n	-1	known	missense	c.128	p.S43L	1.000	superfamily_Acyl_CoA_acyltransferase	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	84	0	0	39	19	32.76	-	-	-	A	72769777	G	A	72769777	3	1	150	1	0	0	0	0	1	0	0	0	10254	1059	37	1	515	1	NAT9	17	72769777	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	10218733	72769777	8425433	104	8835										
NDC80	0	genome.wustl.edu	37	chr18	2595498	2595498	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	agtactcagttgcagacattGagcgaataaatcatgaaaga	9	6	2	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	18	2595498	2595498	G	A	SNP	NDC80	ENST00000261597	human	ensembl	69_37n	1	known	missense	c.1099	p.E367K	1.000	NULL	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986	27	0	0	25	8	24.24	-	-	-	A	2595498	G	A	2595498	3	1	150	1	0	0	0	0	1	0	0	0	10314	1291	45	2	1137	2	NDC80	18	2595498	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		2595498	75481750	105	8836										
INSR	0	genome.wustl.edu	37	chr19	7117096	7117096	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	attggaccgaggcaaggtcaGaatccgcccgtttttcttgc	11	11	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	7117096	7117096	G	A	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	silent	c.4120	p.L1374	1.000	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	40	0	0	44	5	10.2	-	-	-	A	7117096	G	A	7117096	2	1	150	1	0	0	0	0	0	0	0	1	7827	933	33	2		2	INSR	19	7117096	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09		7117096	52011887	106	8837										
DDX49	0	genome.wustl.edu	37	chr19	19035754	19035754	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	acccccgggctccccaagatCtacatccaccgagtcggccg	9	19	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	19035754	19035754	C	T	SNP	DDX49	ENST00000438170	human	ensembl	69_37n	1	known	missense	c.701	p.S234F	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX49	HGNC	ENSG00000105671	49	0	0	41	16	28.07	-	-	-	T	19035754	C	T	19035754	3	4	150	1	0	0	0	0	1	0	0	0	4397	903	32	2	1027	2	DDX49	19	19035754	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	11918658	19035754	40093229	107	8838										
ZNF527	0	genome.wustl.edu	37	chr19	37879510	37879510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cacaacagaaagttcctaccAtacagcaagtacataaattt	4	10	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	37879510	37879510	A	G	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.559	p.I187V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	23	0	0	10	8	44.44	-	-	-	G	37879510	A	G	37879510	3	3	150	1	0	0	0	0	1	0	0	0	18064	217	8	5	573	5	ZNF527	19	37879510	Missense_Mutation	SNP	A	TCGA-A7-A56D-01A-11D-A27P-09	18843756	37879510	21249473	108	8839										
ZNF283	0	genome.wustl.edu	37	chr19	44351580	44351580	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gaagacctttagctggggatCaagccttgttaaacatgaga	11	7	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	44351580	44351580	C	T	SNP	ZNF283	ENST00000324461	human	ensembl	69_37n	1	known	missense	c.827	p.S276L	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637	24	0	0	23	7	23.33	-	-	-	T	44351580	C	T	44351580	3	4	150	1	0	0	0	0	1	0	0	0	17916	838	29	2	841	2	ZNF283	19	44351580	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	6472070	44351580	14777403	109	8840										
ZNF221	0	genome.wustl.edu	37	chr19	44470975	44470975	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	attcacgacgatcttcccatCagagatcccacaatggagaa	7	12	3	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	44470975	44470975	C	T	SNP	ZNF221	ENST00000251269	human	ensembl	69_37n	1	known	nonsense	c.1321	p.Q441*	0.192	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905	36	0	0	28	8	22.22	-	-	-	T	44470975	C	T	44470975	4	4	150	1	0	0	0	0	0	1	0	0	17871	827	29	2	1335	2	ZNF221	19	44470975	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	119395	44470975	14658008	110	8841										
ZNF223	0	genome.wustl.edu	37	chr19	44570471	44570471	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcagtgatatgtccatctttGatcttcctcagcaaatacgc	6	11	4	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	44570471	44570471	G	C	SNP	ZNF223	ENST00000591793	human	ensembl	69_37n	1	known	missense	c.820	p.D274H	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC084219.2	Clone_based_vega_gene	ENSG00000267022	53	0	0	54	21	27.63	-	-	-	C	44570471	G	C	44570471	3	2	150	1	0	0	0	0	1	0	0	0	17873	1290	45	2	504	2	ZNF223	19	44570471	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	99496	44570471	14558512	111	8842										
PNMAL1	0	genome.wustl.edu	37	chr19	46973575	46973575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	ctgcttctttctcctggagcGagacttagctccagccctgc	9	15	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	46973575	46973575	G	C	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	missense	c.718	p.R240G	0.043	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	50	0	0	55	24	30.38	-	-	-	C	46973575	G	C	46973575	3	2	150	1	0	0	0	0	1	0	0	0	12231	1058	37	3	631	3	PNMAL1	19	46973575	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	2403104	46973575	12155408	112	8843										
ZNF547	0	genome.wustl.edu	37	chr19	57888790	57888790	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	atttgtgaagaaccacagagTtcacatggcagggaagacct	11	8	1	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	19	57888790	57888790	T	A	SNP	ZNF547	ENST00000282282	human	ensembl	69_37n	1	known	missense	c.446	p.V149D	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433	18	0	0	30	8	21.05	-	-	-	A	57888790	T	A	57888790	3	1	150	1	0	0	0	0	1	0	0	0	18075	1725	60	5	456	5	ZNF547	19	57888790	Missense_Mutation	SNP	T	TCGA-A7-A56D-01A-11D-A27P-09	10915215	57888790	1240193	113	8844										
SPTLC3	0	genome.wustl.edu	37	chr20	12989859	12989859	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cccctcgcagactgaaaactAaagcctgcagagacctctga	8	14	1	4			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	20	12989859	12989859	A	G	SNP	SPTLC3	ENST00000476791	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTLC3	HGNC	ENSG00000172296	13	0	0	19	6	24	-	-	-	G	12989859	A	G	12989859	1	3	150	0	1	0	0	0	0	0	0	0	15216	377	13	5		5	SPTLC3	20	12989859	RNA	SNP	A	TCGA-A7-A56D-01A-11D-A27P-09		12989859	50035661	114	8845										
RBBP9	0	genome.wustl.edu	37	chr20	18474699	18474699	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gggcagccagatgctctctcGtgctgtaacttaaggttcag	12	10	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	20	18474699	18474699	G	A	SNP	RBBP9	ENST00000337227	human	ensembl	69_37n	-1	known	nonsense	c.151	p.R51*	0.987	pfam_DUF1234_Hydrolase	pfam_DUF1234_Hydrolase	-	no_errors	RBBP9	HGNC	ENSG00000089050	27	0	0	44	9	16.98	-	-	-	A	18474699	G	A	18474699	4	1	150	1	0	0	0	0	0	1	0	0	13189	1153	40	1	421	1	RBBP9	20	18474699	Nonsense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	5484840	18474699	44550821	115	8846										
MRPS6	0	genome.wustl.edu	37	chr21	35497440	35497440	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tcttcagatattcctcgtatCtgtgagctatctcatatcct	5	11	4	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	21	35497440	35497440	C	G	SNP	MRPS6	ENST00000482679	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.923	-	-	-	no_errors	MRPS6	HGNC	ENSG00000243927	56	0	0	44	9	16.98	-	-	-	G	35497440	C	G	35497440	1	3	150	0	1	0	0	0	0	0	0	0	9919	928	32	2		2	MRPS6	21	35497440	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		35497440	12632455	116	8847										
DOPEY2	0	genome.wustl.edu	37	chr21	37661476	37661476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	tggacacagcgctttcttttCcacctgacaagatgccatta	7	12	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	21	37661476	37661476	C	A	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.6487	p.P2163T	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	52	0	0	45	32	41.56	-	-	-	A	37661476	C	A	37661476	3	1	150	1	0	0	0	0	1	0	0	0	4743	855	30	2	6621	2	DOPEY2	21	37661476	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	2164036	37661476	10468419	117	8848										
TRPM2	0	genome.wustl.edu	37	chr21	45826557	45826557	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gccaagcaggccatcctcatCcacaacgagcgccgggtgga	12	15	1	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	21	45826557	45826557	C	G	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.2871	p.I957M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	276	0	0	164	43	20.77	-	-	-	G	45826557	C	G	45826557	3	3	150	1	0	0	0	0	1	0	0	0	16682	845	30	2	2945	2	TRPM2	21	45826557	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	8165081	45826557	2303338	118	8849										
PISD	0	genome.wustl.edu	37	chr22	32021619	32021619	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gccccccaggccaggctcctCcagcctcgggggctgaccac	12	20	0	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	22	32021619	32021619	C	G	SNP	PISD	ENST00000478893	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PISD	HGNC	ENSG00000241878	115	0	0	108	21	16.15	-	-	-	G	32021619	C	G	32021619	1	3	150	0	1	0	0	0	0	0	0	0	12020	870	30	2		2	PISD	22	32021619	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		32021619	19282947	119	8850										
ARSH	0	genome.wustl.edu	37	chrX	2933208	2933208	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cccttgccctggttccttttCtgcttctcattcccaagttc	5	16	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	2933208	2933208	C	T	SNP	ARSH	ENST00000381130	human	ensembl	69_37n	1	known	silent	c.538	p.L180	0.001	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSH	HGNC	ENSG00000205667	85	0	0	194	36	15.65	-	-	-	T	2933208	C	T	2933208	2	4	150	1	0	0	0	0	0	0	0	1	997	912	32	2		2	ARSH	23	2933208	Silent	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09		2933208	152337352	120	8851										
MXRA5	0	genome.wustl.edu	37	chrX	3242930	3242930	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtccttcagcttgtgtatctCatgtttgtacaacttctttg	7	9	3	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	3242930	3242930	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	nonsense	c.796	p.E266*	0.987	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	80	0	0	195	38	16.31	-	-	-	A	3242930	C	A	3242930	4	1	150	1	0	0	0	0	0	1	0	0	10075	835	29	2	7702	2	MXRA5	23	3242930	Nonsense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	309722	3242930	152027630	121	8852										
SAT1	0	genome.wustl.edu	37	chrX	23801333	23801333	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	actggtgtttatccgtcactCgccgaggttccttgggtcat	11	11	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	23801333	23801333	C	T	SNP	SAT1	ENST00000489394	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAT1	HGNC	ENSG00000130066	19	0	0	19	23	54.76	-	-	-	T	23801333	C	T	23801333	1	4	150	0	1	0	0	0	0	0	0	0	13938	899	31	1		1	SAT1	23	23801333	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	20558403	23801333	131469227	122	8853										
RGN	0	genome.wustl.edu	37	chrX	46952339	46952339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	aattgctccctactcctatgCgggatgaggacaggtcttct	10	11	2	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	46952339	46952339	C	T	SNP	RGN	ENST00000336169	human	ensembl	69_37n	1	known	missense	c.893	p.A298V	0.977	NULL	pfam_SGL,prints_SMP-30,prints_Regucalcin	-	no_errors	RGN	HGNC	ENSG00000130988	107	0	0	95	38	28.57	-	-	-	T	46952339	C	T	46952339	3	4	150	1	0	0	0	0	1	0	0	0	13365	768	27	1	915	1	RGN	23	46952339	Missense_Mutation	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	23151006	46952339	108318221	123	8854										
KDM5C	0	genome.wustl.edu	37	chrX	53225218	53225218	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cggattatggcctcaagtgtGgctggtggatgcttctgcct	14	9	2	0			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	53225218	53225218	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.3000	p.A1000	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	101	1	0.96	97	43	30.71	-	-	-	A	53225218	G	A	53225218	2	1	150	1	0	0	0	0	0	0	0	1	8188	1335	47	4		4	KDM5C	23	53225218	Silent	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	6272879	53225218	102045342	124	8855										
NLGN3	0	genome.wustl.edu	37	chrX	70390825	70390825	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gtctgatctgggttttgcctCtgcccttggggaaatgctat	12	9	3	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	70390825	70390825	C	T	SNP	NLGN3	ENST00000476589	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	NLGN3	HGNC	ENSG00000196338	82	0	0	88	25	22.12	-	-	-	T	70390825	C	T	70390825	1	4	150	0	1	0	0	0	0	0	0	0	10535	928	32	2		2	NLGN3	23	70390825	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	17165607	70390825	84879735	125	8856										
NAP1L3	0	genome.wustl.edu	37	chrX	92928470	92928470	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	gctggggatgcagaggccggCgctgaggtggcagcggcagt	21	9	0	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	92928470	92928470	C	T	SNP	NAP1L3	ENST00000475430	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAP1L3	HGNC	ENSG00000186310	63	0	0	91	11	10.58	-	-	-	T	92928470	C	T	92928470	1	4	150	0	1	0	0	0	0	0	0	0	10230	783	27	1		1	NAP1L3	23	92928470	RNA	SNP	C	TCGA-A7-A56D-01A-11D-A27P-09	22537645	92928470	62342090	126	8857										
SLITRK2	0	genome.wustl.edu	37	chrX	144905077	144905077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	cccaaaccgaccagtccaaaGaaactctacctaacagggaa	6	14	1	1			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	144905077	144905077	G	C	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.1134	p.K378N	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	37	0	0	36	4	10	-	-	-	C	144905077	G	C	144905077	3	2	150	1	0	0	0	0	1	0	0	0	14832	933	33	2	1136	2	SLITRK2	23	144905077	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	51976607	144905077	10365483	127	8858										
MAGEA6	0	genome.wustl.edu	37	chrX	151869614	151869614	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.404761904761905	51	1.18505624075396e-16	3.66648648648649	3.93226863226863	3.52502179598954	0.0223586268561603	0.242963745170275	37	caagcaccttccctgacctgGagtctgagttccaagcagca	9	14	1	2			TCGA-A7-A56D-01A-11D-A27P-09	TCGA-A7-A56D-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc8ca430-e89c-4f9b-8745-bccf6373accc	74901ecc-d370-42c5-812e-8e842cd8532f	X	151869614	151869614	G	C	SNP	MAGEA6	ENST00000329342	human	ensembl	69_37n	1	known	missense	c.304	p.E102Q	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA6	HGNC	ENSG00000197172	121	0	0	163	25	13.3	-	-	-	C	151869614	G	C	151869614	3	2	150	1	0	0	0	0	1	0	0	0	9239	1175	41	2	306	2	MAGEA6	23	151869614	Missense_Mutation	SNP	G	TCGA-A7-A56D-01A-11D-A27P-09	6964537	151869614	3400946	128	8859										
CCDC27	0	genome.wustl.edu	37	chr1	3677858	3677858	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgcccaggatcactgcctgtCtgagctggagatacaggttc	12	11	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	3677858	3677858	C	T	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	missense	c.725	p.S242F	0.006	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	42	0	0	15	8	34.78	-	-	-	T	3677858	C	T	3677858	3	4	151	1	0	0	0	0	1	0	0	0	2827	913	32	2	743	2	CCDC27	1	3677858	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		3677858	245572763	1	8860										
MTOR	0	genome.wustl.edu	37	chr1	11174441	11174441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagcacggccatgacactgtCcttgtgctctcgcagcacct	9	16	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	11174441	11174441	C	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.7234	p.D2412H	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	39	0	0	5	4	44.44	-	-	-	G	11174441	C	G	11174441	3	3	151	1	0	0	0	0	1	0	0	0	10026	855	30	2	439	2	MTOR	1	11174441	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	7496583	11174441	238076180	2	8861										
RBBP4	0	genome.wustl.edu	37	chr1	33116821	33116821	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ggggcgcaggaaacaatagaGgccgcgcgcacagagcgagc	17	11	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	33116821	33116821	G	A	SNP	RBBP4	ENST00000524393	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBBP4	HGNC	ENSG00000162521	20	0	0	1	7	87.5	-	-	-	A	33116821	G	A	33116821	1	1	151	0	1	0	0	0	0	0	0	0	13184	1015	35	4		4	RBBP4	1	33116821	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	21942380	33116821	216133800	3	8862										
ADC	0	genome.wustl.edu	37	chr1	33586077	33586077	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gggtctcctttggtctccttCccacctttgtaaatataatg	7	11	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	33586077	33586077	C	A	SNP	ADC	ENST00000471119	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADC	HGNC	ENSG00000142920	50	0	0	27	4	12.9	-	-	-	A	33586077	C	A	33586077	1	1	151	0	1	0	0	0	0	0	0	0	287	870	30	2		2	ADC	1	33586077	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	469256	33586077	215664544	4	8863										
BEST4	0	genome.wustl.edu	37	chr1	45253311	45253311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtagatgcttcccctccagcGgagaagcaggccagagaaac	12	12	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	45253311	45253311	G	A	SNP	BEST4	ENST00000372207	human	ensembl	69_37n	-1	known	missense	c.67	p.R23C	0.063	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST4	HGNC	ENSG00000142959	40	0	0	82	13	13.68	-	-	-	A	45253311	G	A	45253311	3	1	151	1	0	0	0	0	1	0	0	0	1411	1116	39	1	1390	1	BEST4	1	45253311	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	11667234	45253311	203997310	5	8864										
C1orf87	0	genome.wustl.edu	37	chr1	60521024	60521024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgaagttaatgggaactgggGtgtctctgctcatctgcctt	12	8	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	60521024	60521024	G	T	SNP	C1orf87	ENST00000371201	human	ensembl	69_37n	-1	known	missense	c.194	p.T65N	0.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598	184	0	0	386	67	14.79	-	-	-	T	60521024	G	T	60521024	3	4	151	1	0	0	0	0	1	0	0	0	2084	1261	44	4	1486	4	C1orf87	1	60521024	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	15267713	60521024	188729597	6	8865										
AMY2A	0	genome.wustl.edu	37	chr1	104160229	104160229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaagggatttggaggggttcAggtgggtatgattcatagta	17	2	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	104160229	104160229	A	C	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	1	known	missense	c.167	p.Q56P	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	127	0	0	79	82	50.93	-	-	-	C	104160229	A	C	104160229	3	2	151	1	0	0	0	0	1	0	0	0	594	202	7	5	169	5	AMY2A	1	104160229	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	43639205	104160229	145090392	7	8866										
DENND2D	0	genome.wustl.edu	37	chr1	111740503	111740503	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cccagccgtggagctgagcaGactgcagaaaggaaggggca	16	10	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	111740503	111740503	G	C	SNP	DENND2D	ENST00000473682	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	31	0	0	28	11	28.21	-	-	-	C	111740503	G	C	111740503	1	2	151	0	1	0	0	0	0	0	0	0	4467	957	33	2		2	DENND2D	1	111740503	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	7580274	111740503	137510118	8	8867										
FMO5	0	genome.wustl.edu	37	chr1	146656161	146656161	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttgaggtagtcaggtatttgTagaatattcttcaacttggg	11	4	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	146656161	146656161	T	C	SNP	FMO5	ENST00000441068	human	ensembl	69_37n	-1	known	silent	c.1305	p.L435	0.104	NULL	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO5	HGNC	ENSG00000131781	33	0	0	30	8	21.05	-	-	-	C	146656161	T	C	146656161	2	2	151	1	0	0	0	0	0	0	0	1	6004	1625	57	5		5	FMO5	1	146656161	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	34915658	146656161	102594460	9	8868										
PGLYRP4	0	genome.wustl.edu	37	chr1	153317677	153317677	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcacacccactgttgttgtgGacatgatgggcctgcagttc	11	11	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	153317677	153317677	G	C	SNP	PGLYRP4	ENST00000359650	human	ensembl	69_37n	-1	known	silent	c.321	p.V107	0.052	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP4	HGNC	ENSG00000163218	97	0	0	84	19	18.45	-	-	-	C	153317677	G	C	153317677	2	2	151	1	0	0	0	0	0	0	0	1	11870	1161	41	2		2	PGLYRP4	1	153317677	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	6661516	153317677	95932944	10	8869										
RFWD2	0	genome.wustl.edu	37	chr1	175958531	175958531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cctcaccactcacaaactttGcataagagactgctttacgg	6	13	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	175958531	175958531	G	T	SNP	RFWD2	ENST00000367669	human	ensembl	69_37n	-1	known	missense	c.1814	p.A605E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RFWD2	HGNC	ENSG00000143207	18	0	0	14	6	30	-	-	-	T	175958531	G	T	175958531	3	4	151	1	0	0	0	0	1	0	0	0	13343	1319	46	4	401	4	RFWD2	1	175958531	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	22640854	175958531	73292090	11	8870										
QSOX1	0	genome.wustl.edu	37	chr1	180144454	180144454	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccacctgtgtgtttgcttccAgttcttcaaggcctttacca	7	13	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	180144454	180144454	A	T	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	splice_site	c.367-2	e3-2	1.000	-	-	-	no_errors	QSOX1	HGNC	ENSG00000116260	70	0	0	53	24	31.17	-	-	-	T	180144454	A	T	180144454	5	4	151	1	0	0	0	0	0	0	1	0	12966	202	7	5	375	5	QSOX1	1	180144454	Splice_Site	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	4185923	180144454	69106167	12	8871										
NCF2	0	genome.wustl.edu	37	chr1	183534865	183534865	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acagctggggtcttccagggGctttggaactaggaggagct	16	8	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	183534865	183534865	G	T	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	missense	c.974	p.A325D	0.998	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	32	0	0	46	10	17.86	-	-	-	T	183534865	G	T	183534865	3	4	151	1	0	0	0	0	1	0	0	0	10289	1203	42	4	630	4	NCF2	1	183534865	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3390411	183534865	65715756	13	8872										
HMCN1	0	genome.wustl.edu	37	chr1	186114962	186114962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaggtgaaaagactcggaagCggctgtgcgaccatcctgtg	15	9	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	186114962	186114962	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.14515	p.R4839W	0.991	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	62	0	0	49	23	31.94	-	-	-	T	186114962	C	T	186114962	3	4	151	1	0	0	0	0	1	0	0	0	7271	759	27	1	14885	1	HMCN1	1	186114962	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	2580097	186114962	63135659	14	8873										
CRB1	0	genome.wustl.edu	37	chr1	197390621	197390621	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcaataatcagtcaaaggtgCttctgttcatttcccacaac	5	11	5	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	197390621	197390621	C	A	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.1663	p.L555I	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	42	0	0	33	11	25	-	-	-	A	197390621	C	A	197390621	3	1	151	1	0	0	0	0	1	0	0	0	3878	797	28	4	1685	4	CRB1	1	197390621	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	11275659	197390621	51860000	15	8874										
RASSF5	0	genome.wustl.edu	37	chr1	206762065	206762065	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	actctaagatttttttaaacCacaaaaaccctggttagcca	4	10	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	206762065	206762065	C	G	SNP	RASSF5	ENST00000481486	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.063	-	-	-	no_errors	RASSF5	HGNC	ENSG00000136653	22	0	0	15	6	28.57	-	-	-	G	206762065	C	G	206762065	1	3	151	0	1	0	0	0	0	0	0	0	13172	609	21	4		4	RASSF5	1	206762065	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	9371444	206762065	42488556	16	8875										
KCTD3	0	genome.wustl.edu	37	chr1	215793688	215793688	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgagagaattggatagtggaTtggaagtgcataaaatagct	13	2	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	215793688	215793688	T	C	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	silent	c.2176	p.L726	0.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	18	0	0	24	8	25	-	-	-	C	215793688	T	C	215793688	2	2	151	1	0	0	0	0	0	0	0	1	8164	1490	52	5		5	KCTD3	1	215793688	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	9031623	215793688	33456933	17	8876										
IRF2BP2	0	genome.wustl.edu	37	chr1	234744216	234744216	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctttagacccgttggccccgTtggcctcgaaacccaacaac	8	16	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	1	234744216	234744216	T	C	SNP	IRF2BP2	ENST00000366609	human	ensembl	69_37n	-1	known	missense	c.1025	p.N342S	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP2	HGNC	ENSG00000168264	70	0	0	34	15	30.61	-	-	-	C	234744216	T	C	234744216	3	2	151	1	0	0	0	0	1	0	0	0	7884	1725	60	5	746	5	IRF2BP2	1	234744216	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	18950528	234744216	14506405	18	8877										
NOL10	0	genome.wustl.edu	37	chr2	10743249	10743249	+	Silent	SNP	C	C	A													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaaaacccatgcatatatgcCcggaggaaaggagatccaat							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	10743249	10743249	C	A	SNP	NOL10	ENST00000381685	human	ensembl	69_37n	-1	known	silent	c.1188	p.R396	1.000	NULL	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	41	0	0	17	22	56.41	-	-	-	A	10743249	C	A	10743249	2	1	151	1	0	0	0	0	0	0	0	1	10592	610	22	4		4	NOL10	2	10743249	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		10743249	232456124	19	8878	69	2								
NOL10	0	genome.wustl.edu	37	chr2	10743250	10743250	+	Missense_Mutation	SNP	C	C	A													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaaacccatgcatatatgccCggaggaaaggagatccaatg							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	10743250	10743250	C	A	SNP	NOL10	ENST00000381685	human	ensembl	69_37n	-1	known	missense	c.1187	p.R396L	1.000	NULL	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	41	0	0	17	22	56.41	-	-	-	A	10743250	C	A	10743250	3	1	151	1	0	0	0	0	1	0	0	0	10592	652	23	3	907	3	NOL10	2	10743250	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	1	10743250	232456123	20	8879	69	2								
PROKR1	0	genome.wustl.edu	37	chr2	68872962	68872962	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccacctggccagatggagacCaccatggggttcatggatga	13	11	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	68872962	68872962	C	A	SNP	PROKR1	ENST00000303786	human	ensembl	69_37n	1	known	silent	c.9	p.T3	0.056	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PROKR1	HGNC	ENSG00000169618	47	0	0	34	47	58.02	-	-	-	A	68872962	C	A	68872962	2	1	151	1	0	0	0	0	0	0	0	1	12633	581	21	4		4	PROKR1	2	68872962	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	58129712	68872962	174326411	21	8880										
FBXO41	0	genome.wustl.edu	37	chr2	73490823	73490823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cacctgtacgtgacagcctgCagggcacggcagtagcagct	13	13	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	73490823	73490823	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	69_37n	-1	known	silent	c.2241	p.L747	1.000	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO41	HGNC	ENSG00000163013	125	0	0	107	48	30.97	-	-	-	T	73490823	C	T	73490823	2	4	151	1	0	0	0	0	0	0	0	1	5796	697	25	4		4	FBXO41	2	73490823	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	4617861	73490823	169708550	22	8881										
ALMS1	0	genome.wustl.edu	37	chr2	73679158	73679158	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaaaattttaagagttcctgGaccagctgaccagaagactg	10	8	0	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	73679158	73679158	G	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.5501	p.G1834A	0.001	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	25	0	0	37	20	34.48	-	-	-	C	73679158	G	C	73679158	3	2	151	1	0	0	0	0	1	0	0	0	535	1174	41	2	5531	2	ALMS1	2	73679158	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	188335	73679158	169520215	23	8882										
DQX1	0	genome.wustl.edu	37	chr2	74745704	74745704	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gggaggcaagttactcaggaAgtatggaggggccaattcca	15	7	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	74745704	74745704	A	C	SNP	DQX1	ENST00000393951	human	ensembl	69_37n	-1	known	missense	c.2023	p.F675V	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	60	0	0	79	18	18.56	-	-	-	C	74745704	A	C	74745704	3	2	151	1	0	0	0	0	1	0	0	0	4786	72	3	5	134	5	DQX1	2	74745704	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	1066546	74745704	168453669	24	8883										
LRP1B	0	genome.wustl.edu	37	chr2	141660640	141660640	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	catgttttattgtctttgttGagttgaagtccttcagggca	10	6	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	141660640	141660640	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.3615	p.L1205	0.609	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	51	0	0	45	19	29.69	-	-	-	A	141660640	G	A	141660640	2	1	151	1	0	0	0	0	0	0	0	1	9021	1277	45	2		2	LRP1B	2	141660640	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	66914936	141660640	101538733	25	8884										
ZEB2	0	genome.wustl.edu	37	chr2	145255319	145255319	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tagtccaggccttttctgacAatcttgatgaccctgtaaga	8	10	2	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	145255319	145255319	A	C	SNP	ZEB2	ENST00000434448	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZEB2	HGNC	ENSG00000169554	40	0	0	19	16	45.71	-	-	-	C	145255319	A	C	145255319	1	2	151	0	1	0	0	0	0	0	0	0	17720	145	5	5		5	ZEB2	2	145255319	RNA	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	3594679	145255319	97944054	26	8885										
BAZ2B	0	genome.wustl.edu	37	chr2	160319659	160319659	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtcattattacatagtagccGaatatcactgaatacttcat	5	8	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	160319659	160319659	G	A	SNP	BAZ2B	ENST00000483316	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.095	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	9	0	0	3	5	62.5	-	-	-	A	160319659	G	A	160319659	1	1	151	0	1	0	0	0	0	0	0	0	1336	1073	37	1		1	BAZ2B	2	160319659	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	15064340	160319659	82879714	27	8886										
ITGA4	0	genome.wustl.edu	37	chr2	182323032	182323032	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atcccggccagacgtgcgaaCagctccagctgggtgagttg	14	12	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	2	182323032	182323032	C	A	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.307	p.Q103K	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	20	0	0	11	9	45	-	-	-	A	182323032	C	A	182323032	3	1	151	1	0	0	0	0	1	0	0	0	7932	479	17	4	313	4	ITGA4	2	182323032	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	22003373	182323032	60876341	28	8887										
ARPP21	0	genome.wustl.edu	37	chr3	35731625	35731625	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaattattgatttcattgctGacaacaagtatgttaaactt	5	5	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	35731625	35731625	G	T	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	missense	c.538	p.D180Y	1.000	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	55	0	0	43	13	23.21	-	-	-	T	35731625	G	T	35731625	3	4	151	1	0	0	0	0	1	0	0	0	982	1290	45	2	573	2	ARPP21	3	35731625	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		35731625	162290805	29	8888										
GOLGA4	0	genome.wustl.edu	37	chr3	37388771	37388771	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agtgctttttgagtatatgaTgggtcgtgagactaaggtat	13	3	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	37388771	37388771	T	G	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.6560	p.M2187R	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	44	0	0	23	24	51.06	-	-	-	G	37388771	T	G	37388771	3	3	151	1	0	0	0	0	1	0	0	0	6607	1464	51	5	6712	5	GOLGA4	3	37388771	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	1657146	37388771	160633659	30	8889										
DCP1A	0	genome.wustl.edu	37	chr3	53381533	53381533	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atctcctgcccagctcgactCagcgcctccatcttgaatcc	6	18	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	53381533	53381533	C	G	SNP	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	37	0	0	7	8	53.33	-	-	-	G	53381533	C	G	53381533	1	3	151	0	1	0	0	0	0	0	0	0	4329	813	29	2		2	DCP1A	3	53381533	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	15992762	53381533	144640897	31	8890										
IL17RD	0	genome.wustl.edu	37	chr3	57136608	57136608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctctgatgggcccggcccacGgggagtgcactgggaaattt	15	11	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	57136608	57136608	G	T	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	missense	c.878	p.P293Q	1.000	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	41	0	0	18	14	43.75	-	-	-	T	57136608	G	T	57136608	3	4	151	1	0	0	0	0	1	0	0	0	7696	1116	39	3	1357	3	IL17RD	3	57136608	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3755075	57136608	140885822	32	8891										
OR5H6	0	genome.wustl.edu	37	chr3	97983248	97983248	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttacatcaacctgactgtaaAataccgctcttcctggcatt	5	12	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	97983248	97983248	A	T	SNP	OR5H6	ENST00000383696	human	ensembl	69_37n	1	known	missense	c.120	p.K40N	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	71	0	0	78	35	30.97	-	-	-	T	97983248	A	T	97983248	3	4	151	1	0	0	0	0	1	0	0	0	11236	11	1	5	122	5	OR5H6	3	97983248	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	40846640	97983248	100039182	33	8892										
CEP97	0	genome.wustl.edu	37	chr3	101476918	101476918	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cttgtcctgagccaacaataAtcagtgctatcttgaaggat	8	9	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	101476918	101476918	A	G	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	1	known	missense	c.1468	p.I490V	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	44	0	0	42	12	22.22	-	-	-	G	101476918	A	G	101476918	3	3	151	1	0	0	0	0	1	0	0	0	3292	101	4	5	1502	5	CEP97	3	101476918	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	3493670	101476918	96545512	34	8893										
STXBP5L	0	genome.wustl.edu	37	chr3	120977986	120977986	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaacctccacaacagattacTagtcttgctgtaagctcagc	7	12	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	120977986	120977986	T	C	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	silent	c.1929	p.T643	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	64	0	0	59	13	18.06	-	-	-	C	120977986	T	C	120977986	2	2	151	1	0	0	0	0	0	0	0	1	15448	1509	53	5		5	STXBP5L	3	120977986	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	19501068	120977986	77044444	35	8894										
TRH	0	genome.wustl.edu	37	chr3	129695551	129695551	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tccttccccagcgtcccagaTctttcaatctgactggctct	6	16	4	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	129695551	129695551	T	C	SNP	TRH	ENST00000302649	human	ensembl	69_37n	1	known	missense	c.221	p.I74T	0.000	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893	29	0	0	33	12	26.67	-	-	-	C	129695551	T	C	129695551	3	2	151	1	0	0	0	0	1	0	0	0	16574	1435	50	5	227	5	TRH	3	129695551	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	8717565	129695551	68326879	36	8895										
NEK11	0	genome.wustl.edu	37	chr3	130851600	130851600	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cttttgtaggaggatacttcAtcgagacttaaagtcaaaga	9	6	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	130851600	130851600	A	C	SNP	NEK11	ENST00000383366	human	ensembl	69_37n	1	known	missense	c.467	p.H156P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670	48	0	0	46	9	16.36	-	-	-	C	130851600	A	C	130851600	3	2	151	1	0	0	0	0	1	0	0	0	10395	217	8	5	481	5	NEK11	3	130851600	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	1156049	130851600	67170830	37	8896										
MUC20	0	genome.wustl.edu	37	chr3	195345599	195345599	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gccgctctggaaactcaaacGctgagcgctgagacctcttc	10	14	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	195345599	195345599	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	silent	c.72	p.T24	0.014	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	9	0	0	10	6	37.5	-	-	-	A	195345599	G	A	195345599	2	1	151	1	0	0	0	0	0	0	0	1	10048	1102	38	1		1	MUC20	3	195345599	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	64493999	195345599	2676831	38	8897										
LRCH3	0	genome.wustl.edu	37	chr3	197574884	197574885	+	Frame_Shift_Del	DEL	TT	TT	-													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agagagatgctgtcctggacTttgtcaaagtgagtcgtttg							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	3	197574884	197574885	TT	-	DEL	LRCH3	ENST00000438796	human	ensembl	69_37n	1	known	frame_shift_del	c.1522_1523	p.F508fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	76	0	0	58	51	46.79	-	-	-	-	197574885	TT	-	197574884	7	5	151	1	0	1	0	1	0	0	0	0	9000	1609	56	0	1568	0	LRCH3	3	197574884	Frame_Shift_Del	DEL	TT	TCGA-A7-A5ZV-01A-11D-A28B-09	2229285	197574884	447546	39	8898										
FGFR3	0	genome.wustl.edu	37	chr4	1805440	1805440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cggcgggcgctaacaccaccGacaaggagctagaggttctc	13	13	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	4	1805440	1805440	G	A	SNP	FGFR3	ENST00000260795	human	ensembl	69_37n	1	known	missense	c.952	p.D318N	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078	164	0	0	26	37	58.73	-	-	-	A	1805440	G	A	1805440	3	1	151	1	0	0	0	0	1	0	0	0	5913	1058	37	1	1133	1	FGFR3	4	1805440	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		1805440	189348836	40	8899										
TNIP3	0	genome.wustl.edu	37	chr4	122103898	122103898	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	accgttttggatgaggagacGcatttctctcaatcagatcc	9	10	3	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	4	122103898	122103898	G	C	SNP	TNIP3	ENST00000509841	human	ensembl	69_37n	-1	putative	missense	c.143	p.A48G	0.000	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	47	0	0	27	11	28.95	-	-	-	C	122103898	G	C	122103898	3	2	151	1	0	0	0	0	1	0	0	0	16411	1102	38	3		3	TNIP3	4	122103898	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	120298458	122103898	69050378	41	8900										
LARP1B	0	genome.wustl.edu	37	chr4	129043104	129043104	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	taggacgaaaaaacacatttActgattggtctgataatgat	8	5	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	4	129043104	129043104	A	T	SNP	LARP1B	ENST00000326639	human	ensembl	69_37n	1	known	missense	c.1285	p.T429S	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709	34	0	0	26	12	31.58	-	-	-	T	129043104	A	T	129043104	3	4	151	1	0	0	0	0	1	0	0	0	8683	391	14	5	1408	5	LARP1B	4	129043104	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	6939206	129043104	62111172	42	8901										
IRX4	0	genome.wustl.edu	37	chr5	1878506	1878506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctcagggaggtggcggcggcGgcggcggcggtggctgtgtg	24	9	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	1878506	1878506	G	A	SNP	IRX4	ENST00000231357	human	ensembl	69_37n	-1	known	silent	c.1137	p.A379	0.932	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX4	HGNC	ENSG00000113430	22	0	0	17	8	30.77	-	-	-	A	1878506	G	A	1878506	2	1	151	1	0	0	0	0	0	0	0	1	7900	1103	39	1		1	IRX4	5	1878506	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		1878506	179036754	43	8902										
CDH9	0	genome.wustl.edu	37	chr5	26906194	26906194	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aacaacctggtactgctctcTattttctctgctcatgtctg	6	12	4	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	26906194	26906194	T	C	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.685	p.R229G	0.368	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	79	0	0	132	28	17.5	-	-	-	C	26906194	T	C	26906194	3	2	151	1	0	0	0	0	1	0	0	0	3146	1530	53	5	1716	5	CDH9	5	26906194	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	25027688	26906194	154009066	44	8903										
NIPBL	0	genome.wustl.edu	37	chr5	36996575	36996575	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttgtttcactgttttccagaGctggcttcttcactacacag	7	11	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	36996575	36996575	G	T	SNP	NIPBL	ENST00000504430	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NIPBL	HGNC	ENSG00000164190	83	0	0	113	30	20.83	-	-	-	T	36996575	G	T	36996575	1	4	151	0	1	0	0	0	0	0	0	0	10500	986	34	4		4	NIPBL	5	36996575	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	10090381	36996575	143918685	45	8904										
CARD6	0	genome.wustl.edu	37	chr5	40843354	40843354	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ataaaacagcctgaagccccTgagatcacagtgttcttcag	8	11	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	40843354	40843354	T	C	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	silent	c.384	p.P128	0.086	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	20	0	0	38	12	24	-	-	-	C	40843354	T	C	40843354	2	2	151	1	0	0	0	0	0	0	0	1	2675	1567	55	5		5	CARD6	5	40843354	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	3846779	40843354	140071906	46	8905										
C6	0	genome.wustl.edu	37	chr5	41158826	41158826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctgaggacacccggaatctgCttctatctcaggaagatcga	10	11	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	41158826	41158826	C	A	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.1918	p.A640S	0.062	superfamily_Complement_control_module	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	40	0	0	38	37	49.33	-	-	-	A	41158826	C	A	41158826	3	1	151	1	0	0	0	0	1	0	0	0	2336	797	28	4	910	4	C6	5	41158826	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	315472	41158826	139756434	47	8906										
MRPS30	0	genome.wustl.edu	37	chr5	44815128	44815128	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atactttggcactgactacaCaagctgatcaaaataaccct	5	11	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	44815128	44815128	C	A	SNP	MRPS30	ENST00000507110	human	ensembl	69_37n	1	known	missense	c.1144	p.Q382K	0.997	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996	34	0	0	46	8	14.81	-	-	-	A	44815128	C	A	44815128	3	1	151	1	0	0	0	0	1	0	0	0	9912	479	17	4	1162	4	MRPS30	5	44815128	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	3656302	44815128	136100132	48	8907										
MAP1B	0	genome.wustl.edu	37	chr5	71495434	71495434	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caggatgtcgatttatgcctCgtgtcctcttgtgaatacaa	9	9	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	71495434	71495434	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	silent	c.6252	p.L2084	0.005	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	29	0	0	8	7	46.67	-	-	-	T	71495434	C	T	71495434	2	4	151	1	0	0	0	0	0	0	0	1	9299	871	31	1		1	MAP1B	5	71495434	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	26680306	71495434	109419826	49	8908										
KIF20A	0	genome.wustl.edu	37	chr5	137518631	137518631	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccagcttcgacagtggcattGctgggctctcttctatcagt	10	12	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	137518631	137518631	G	C	SNP	KIF20A	ENST00000394894	human	ensembl	69_37n	1	known	missense	c.784	p.A262P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	34	0	0	7	5	41.67	-	-	-	C	137518631	G	C	137518631	3	2	151	1	0	0	0	0	1	0	0	0	8338	1319	46	4	806	4	KIF20A	5	137518631	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	66023197	137518631	43396629	50	8909										
PCDHB2	0	genome.wustl.edu	37	chr5	140475557	140475557	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aagatgatcttccttttttcTtgaaaccttctgttgagaac	6	8	3	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	140475557	140475557	T	C	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	silent	c.1183	p.L395	0.048	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	43	0	0	28	16	36.36	-	-	-	C	140475557	T	C	140475557	2	2	151	1	0	0	0	0	0	0	0	1	11615	1606	56	5		5	PCDHB2	5	140475557	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	2956926	140475557	40439703	51	8910										
TCERG1	0	genome.wustl.edu	37	chr5	145859620	145859620	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aacaagaattaatggaagaaAttaatgaagatgagcctgtt	9	3	0	5			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	145859620	145859620	A	C	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	missense	c.1849	p.I617L	0.886	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	26	0	0	11	10	47.62	-	-	-	C	145859620	A	C	145859620	3	2	151	1	0	0	0	0	1	0	0	0	15780	101	4	5	1895	5	TCERG1	5	145859620	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	5384063	145859620	35055640	52	8911										
GRIA1	0	genome.wustl.edu	37	chr5	153190763	153190763	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gagccacagttcagggatgcCcttgggagccacgggattgt	15	10	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	153190763	153190763	C	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.2729	p.P910H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	56	0	0	10	10	50	-	-	-	A	153190763	C	A	153190763	3	1	151	1	0	0	0	0	1	0	0	0	6818	623	22	4	2880	4	GRIA1	5	153190763	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	7331143	153190763	27724497	53	8912										
HMMR	0	genome.wustl.edu	37	chr5	162909722	162909722	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	attacaggaaaaagcggccaAggctgggaaaaatgcagagg	14	6	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	5	162909722	162909722	A	T	SNP	HMMR	ENST00000393915	human	ensembl	69_37n	1	known	missense	c.1460	p.K487M	0.140	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571	44	0	0	11	18	62.07	-	-	-	T	162909722	A	T	162909722	3	4	151	1	0	0	0	0	1	0	0	0	7293	72	3	5	1510	5	HMMR	5	162909722	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	9718959	162909722	18005538	54	8913										
PRPF4B	0	genome.wustl.edu	37	chr6	4041044	4041044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagatcacgcttgcgaaggcGgtctcgatcacgcggtggtc	14	12	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	4041044	4041044	G	A	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.1451	p.R484Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	43	0	0	10	19	65.52	-	-	-	A	4041044	G	A	4041044	3	1	151	1	0	0	0	0	1	0	0	0	12654	1116	39	1	1465	1	PRPF4B	6	4041044	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		4041044	167074023	55	8914										
GCNT2	0	genome.wustl.edu	37	chr6	10529665	10529665	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccaggctgacctgaactgccTggaagaccttgtggcctctg	12	13	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	10529665	10529665	T	A	SNP	GCNT2	ENST00000379597	human	ensembl	69_37n	1	known	missense	c.521	p.L174Q	0.928	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846	14	0	0	0	4	100	-	-	-	A	10529665	T	A	10529665	3	1	151	1	0	0	0	0	1	0	0	0	6351	1580	55	5	523	5	GCNT2	6	10529665	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	6488621	10529665	160585402	56	8915										
RPL10A	0	genome.wustl.edu	37	chr6	35437091	35437091	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cggtggctgctgcggtcccaGacccttcaccggcccttggg	14	16	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	35437091	35437091	G	C	SNP	RPL10A	ENST00000467020	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RPL10A	HGNC	ENSG00000198755	61	0	0	21	11	34.38	-	-	-	C	35437091	G	C	35437091	1	2	151	0	1	0	0	0	0	0	0	0	13641	957	33	2		2	RPL10A	6	35437091	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	24907426	35437091	135677976	57	8916										
DNAH8	0	genome.wustl.edu	37	chr6	38813487	38813487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctgctcaaaggaaccgaatcGggagaaattatcactttgat	9	8	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	38813487	38813487	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.4332	p.S1444	0.350	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	47	0	0	42	44	51.16	-	-	-	A	38813487	G	A	38813487	2	1	151	1	0	0	0	0	0	0	0	1	4642	1103	39	1		1	DNAH8	6	38813487	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3376396	38813487	132301580	58	8917										
TRERF1	0	genome.wustl.edu	37	chr6	42236954	42236954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtccggatctcgctggcctgGgagtaggtgtattggtagcc	16	9	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	42236954	42236954	G	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.375	p.S125	0.980	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	36	0	0	50	6	10.71	-	-	-	T	42236954	G	T	42236954	2	4	151	1	0	0	0	0	0	0	0	1	16571	1219	43	4		4	TRERF1	6	42236954	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3423467	42236954	128878113	59	8918										
SLC22A7	0	genome.wustl.edu	37	chr6	43269337	43269337	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccaggctgtgagcaaagtggCcgccggggaacgggtggtcc	18	11	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	43269337	43269337	C	A	SNP	SLC22A7	ENST00000372585	human	ensembl	69_37n	1	known	missense	c.968	p.A323D	0.035	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204	41	0	0	39	10	20.41	-	-	-	A	43269337	C	A	43269337	3	1	151	1	0	0	0	0	1	0	0	0	14548	739	26	4	990	4	SLC22A7	6	43269337	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	1032383	43269337	127845730	60	8919										
OPN5	0	genome.wustl.edu	37	chr6	47791825	47791825	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgttatttttctgacttctcGcctccactccacttaccctg	4	15	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	47791825	47791825	G	A	SNP	OPN5	ENST00000244799	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OPN5	HGNC	ENSG00000124818	25	0	0	63	17	21.25	-	-	-	A	47791825	G	A	47791825	1	1	151	0	1	0	0	0	0	0	0	0	10956	1102	38	1		1	OPN5	6	47791825	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	4522488	47791825	123323242	61	8920										
EYS	0	genome.wustl.edu	37	chr6	65596590	65596590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgggacagatatggatttacCtgtataaccaggggcacaga	12	7	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	65596590	65596590	C	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.2992	p.G998C	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	50	0	0	53	26	32.91	-	-	-	A	65596590	C	A	65596590	3	1	151	1	0	0	0	0	1	0	0	0	5369	695	24	4	6387	4	EYS	6	65596590	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	17804765	65596590	105518477	62	8921										
COL19A1	0	genome.wustl.edu	37	chr6	70881901	70881901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caggattagaaggatttccaGgtgtaaaggtaagcacagaa	12	5	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	70881901	70881901	G	A	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.2614	p.G872S	1.000	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	53	0	0	61	20	24.69	-	-	-	A	70881901	G	A	70881901	3	1	151	1	0	0	0	0	1	0	0	0	3706	1000	35	4	2772	4	COL19A1	6	70881901	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	5285311	70881901	100233166	63	8922										
ZNF292	0	genome.wustl.edu	37	chr6	87969944	87969944	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tacatgaaacttcatgaaatGactcctgaagaaattgaaag	7	6	1	6			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	87969944	87969944	G	C	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.6597	p.M2199I	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	22	0	0	29	9	23.68	-	-	-	C	87969944	G	C	87969944	3	2	151	1	0	0	0	0	1	0	0	0	17922	1290	45	2	6627	2	ZNF292	6	87969944	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	17088043	87969944	83145123	64	8923										
UBE2J1	0	genome.wustl.edu	37	chr6	90039466	90039466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaatataagagctgccaatgCcaaagtcaggatgacaatca	9	8	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	90039466	90039466	C	T	SNP	UBE2J1	ENST00000435041	human	ensembl	69_37n	-1	known	missense	c.889	p.A297T	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J1	HGNC	ENSG00000198833	49	0	0	39	13	25	-	-	-	T	90039466	C	T	90039466	3	4	151	1	0	0	0	0	1	0	0	0	16957	739	26	4	71	4	UBE2J1	6	90039466	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	2069522	90039466	81075601	65	8924										
SCML4	0	genome.wustl.edu	37	chr6	108042094	108042094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagtacagcgaggaggagggGtgcaaggagcccctgtggtt	18	8	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	108042094	108042094	G	T	SNP	SCML4	ENST00000369021	human	ensembl	69_37n	-1	known	missense	c.699	p.H233Q	0.012	NULL	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285	39	0	0	16	13	44.83	-	-	-	T	108042094	G	T	108042094	3	4	151	1	0	0	0	0	1	0	0	0	13999	1252	44	4	470	4	SCML4	6	108042094	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	18002628	108042094	63072973	66	8925										
FAM26D	0	genome.wustl.edu	37	chr6	116875396	116875396	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccattacccaatgtttgataAtgtcagtgccagcaaacgag	8	10	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	116875396	116875396	A	C	SNP	FAM26D	ENST00000368596	human	ensembl	69_37n	1	known	missense	c.440	p.N147T	0.039	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	48	0	0	22	18	45	-	-	-	C	116875396	A	C	116875396	3	2	151	1	0	0	0	0	1	0	0	0	5595	116	4	5		5	FAM26D	6	116875396	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	8833302	116875396	54239671	67	8926										
NUP43	0	genome.wustl.edu	37	chr6	150059887	150059887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gagttcgaagaaaggttacaGcatggagtgtactactatct	11	6	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	150059887	150059887	G	C	SNP	NUP43	ENST00000340413	human	ensembl	69_37n	-1	known	missense	c.530	p.A177G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253	37	0	0	25	21	45.65	-	-	-	C	150059887	G	C	150059887	3	2	151	1	0	0	0	0	1	0	0	0	10838	971	34	4	628	4	NUP43	6	150059887	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	33184491	150059887	21055180	68	8927										
SYNE1	0	genome.wustl.edu	37	chr6	152631867	152631867	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caaacgaattttgatcatctGtcgcaactcctcagtctccc	5	14	4	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	152631867	152631867	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.16852	p.Q5618K	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	44	0	0	42	13	23.64	-	-	-	T	152631867	G	T	152631867	3	4	151	1	0	0	0	0	1	0	0	0	15537	1386	48	4	9850	4	SYNE1	6	152631867	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	2571980	152631867	18483200	69	8928										
SYNE1	0	genome.wustl.edu	37	chr6	152680558	152680558	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttgacttcgatggtctccagCaagctgctgtaactcagcac	9	12	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	152680558	152680558	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.10335	p.L3445F	0.972	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	89	0	0	40	19	32.2	-	-	-	G	152680558	C	G	152680558	3	3	151	1	0	0	0	0	1	0	0	0	15537	709	25	4	16459	4	SYNE1	6	152680558	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	48691	152680558	18434509	70	8929										
TMEM181	0	genome.wustl.edu	37	chr6	159049452	159049453	+	Frame_Shift_Ins	INS	-	-	A													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgttcagcatcgccatccttINStatttgagatttggggcgca							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	159049452	159049453	-	A	INS	TMEM181	ENST00000367090	human	ensembl	69_37n	1	known	frame_shift_ins	c.1533_1534	p.Y511fs	1.000:0.997	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433	99	0	0	66	16	19.51	-	-	-	A	159049453	-	A	159049452	7	5	151	1	0	1	1	0	0	0	0	0	16195	1828	64	0	1587	0	TMEM181	6	159049452	Frame_Shift_Ins	INS	-	TCGA-A7-A5ZV-01A-11D-A28B-09	6368894	159049452	12065615	71	8930										
PARK2	0	genome.wustl.edu	37	chr6	162622175	162622175	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttccttacctgggtcaaggtGagcgttgcctgcctgcaggt	13	11	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	6	162622175	162622175	G	C	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	silent	c.522	p.L174	1.000	pirsf_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	43	0	0	22	12	35.29	-	-	-	C	162622175	G	C	162622175	2	2	151	1	0	0	0	0	0	0	0	1	11522	1277	45	2		2	PARK2	6	162622175	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3572723	162622175	8492892	72	8931										
SLC29A4	0	genome.wustl.edu	37	chr7	5336823	5336823	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gacgttgtcgccggggacgtCcacttcgtaagtgcgcaccg	14	13	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	5336823	5336823	C	G	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	1	known	silent	c.876	p.V292	0.716	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	120	0	0	50	18	26.47	-	-	-	G	5336823	C	G	5336823	2	3	151	1	0	0	0	0	0	0	0	1	14626	842	30	2		2	SLC29A4	7	5336823	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		5336823	153801840	73	8932										
ACTB	0	genome.wustl.edu	37	chr7	5568044	5568044	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agccgtggccatctcttgctCgaagtccagggcgacgtagc	13	13	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	5568044	5568044	C	G	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	missense	c.670	p.E224Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	140	0	0	58	31	34.83	-	-	-	G	5568044	C	G	5568044	3	3	151	1	0	0	0	0	1	0	0	0	193	893	31	3	469	3	ACTB	7	5568044	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	231221	5568044	153570619	74	8933										
THSD7A	0	genome.wustl.edu	37	chr7	11486928	11486928	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aagaaaacttggaccagctgGtcaattgacagtcatcctgg	10	9	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	11486928	11486928	G	C	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.2729	p.T910S	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	43	0	0	74	27	26.73	-	-	-	C	11486928	G	C	11486928	3	2	151	1	0	0	0	0	1	0	0	0	15974	1261	44	4	2308	4	THSD7A	7	11486928	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	5918884	11486928	147651735	75	8934										
HOXA9	0	genome.wustl.edu	37	chr7	27202442	27202442	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gattatatatacaatagacaAgacaggactatatagataat	6	4	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	27202442	27202442	A	C	SNP	HOXA9	ENST00000497089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	HOXA9	HGNC	ENSG00000078399	27	0	0	15	9	37.5	-	-	-	C	27202442	A	C	27202442	1	2	151	0	1	0	0	0	0	0	0	0	7349	87	3	5		5	HOXA9	7	27202442	RNA	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	15715514	27202442	131936221	76	8935										
ABCA13	0	genome.wustl.edu	37	chr7	48318271	48318271	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aagaaagtcacgtcctgaaaCccctcttagaaatgtctggg	9	10	3	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	48318271	48318271	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.7480	p.P2494T	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	27	0	0	28	5	15.15	-	-	-	A	48318271	C	A	48318271	3	1	151	1	0	0	0	0	1	0	0	0	31	507	18	4	7379	4	ABCA13	7	48318271	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	21115829	48318271	110820392	77	8936										
PHTF2	0	genome.wustl.edu	37	chr7	77578993	77578993	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gttacctttttcatacttttAgctacttcatgtacacgaga	5	9	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	77578993	77578993	A	C	SNP	PHTF2	ENST00000248550	human	ensembl	69_37n	1	known	splice_site	c.1960-2	e16-2	1.000	-	-	-	no_errors	PHTF2	HGNC	ENSG00000006576	49	0	0	55	19	25.68	-	-	-	C	77578993	A	C	77578993	5	2	151	1	0	0	0	0	0	0	1	0	11937	434	15	5	1968	5	PHTF2	7	77578993	Splice_Site	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	29260722	77578993	81559670	78	8937										
PCLO	0	genome.wustl.edu	37	chr7	82791775	82791775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cctcttcgctcagctggctcAaatccgcctccatgccggcc	8	19	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	82791775	82791775	A	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.134	p.L45W	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	135	0	0	91	26	22.22	-	-	-	C	82791775	A	C	82791775	3	2	151	1	0	0	0	0	1	0	0	0	11656	131	5	5	15411	5	PCLO	7	82791775	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	5212782	82791775	76346888	79	8938										
KRIT1	0	genome.wustl.edu	37	chr7	91844033	91844033	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caggagctgtataaaagcccTtcaataaattatatctggct	7	8	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	91844033	91844033	T	G	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.1622	p.K541T	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	42	0	0	49	8	14.04	-	-	-	G	91844033	T	G	91844033	3	3	151	1	0	0	0	0	1	0	0	0	8498	1609	56	5	608	5	KRIT1	7	91844033	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	9052258	91844033	67294630	80	8939										
PDK4	0	genome.wustl.edu	37	chr7	95223049	95223049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcatctgggcttttctcatgGaattccaccaaatccatcag	6	12	4	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	95223049	95223049	G	T	SNP	PDK4	ENST00000005178	human	ensembl	69_37n	-1	known	missense	c.306	p.F102L	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799	26	0	0	34	9	20.93	-	-	-	T	95223049	G	T	95223049	3	4	151	1	0	0	0	0	1	0	0	0	11751	1165	41	2	965	2	PDK4	7	95223049	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3379016	95223049	63915614	81	8940										
PTCD1	0	genome.wustl.edu	37	chr7	99023239	99023239	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	actcagcatcagccgccacaCctgccacggaagagacaaac	8	16	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	99023239	99023239	C	G	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	missense	c.1063	p.V355L	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	15	0	0	11	6	35.29	-	-	-	G	99023239	C	G	99023239	3	3	151	1	0	0	0	0	1	0	0	0	12807	521	18	4	1198	4	PTCD1	7	99023239	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	3800190	99023239	60115424	82	8941										
TFR2	0	genome.wustl.edu	37	chr7	100224404	100224404	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acccgcattatgcgcacgttGtacatgcgtgtcagtcgctc	10	13	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	100224404	100224404	G	C	SNP	TFR2	ENST00000223051	human	ensembl	69_37n	-1	known	nonsense	c.2118	p.Y706*	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327	71	0	0	57	19	24.68	-	-	-	C	100224404	G	C	100224404	4	2	151	1	0	0	0	0	0	1	0	0	15906	1372	48	4	295	4	TFR2	7	100224404	Nonsense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	1201165	100224404	58914259	83	8942										
GIGYF1	0	genome.wustl.edu	37	chr7	100284299	100284299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ggcggagcgccagcggtcgcCgtctcgccggggccctgctc	17	17	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	100284299	100284299	C	A	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.667	p.G223C	0.994	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	56	0	0	41	13	24.07	-	-	-	A	100284299	C	A	100284299	3	1	151	1	0	0	0	0	1	0	0	0	6429	652	23	3	2512	3	GIGYF1	7	100284299	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	59895	100284299	58854364	84	8943										
FLNC	0	genome.wustl.edu	37	chr7	128488116	128488116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtatgctgaccaggaggtgcCacgcaggtgaggaccagccc	15	12	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	128488116	128488116	C	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.4574	p.P1525Q	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	83	0	0	60	14	18.92	-	-	-	A	128488116	C	A	128488116	3	1	151	1	0	0	0	0	1	0	0	0	5981	594	21	4	4676	4	FLNC	7	128488116	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	28203817	128488116	30650547	85	8944										
ZNF746	0	genome.wustl.edu	37	chr7	149171723	149171723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ggtgcaggtgaagggccgcaCgcccgtgtgcgttcggtagt	18	10	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	149171723	149171723	C	T	SNP	ZNF746	ENST00000458143	human	ensembl	69_37n	-1	known	missense	c.1690	p.V564M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF746	HGNC	ENSG00000181220	67	0	0	66	26	28.26	-	-	-	T	149171723	C	T	149171723	3	4	151	1	0	0	0	0	1	0	0	0	18223	536	19	1	251	1	ZNF746	7	149171723	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	20683607	149171723	9966940	86	8945										
GIMAP8	0	genome.wustl.edu	37	chr7	150174567	150174567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cgcgattatgctgttcacccGgaaggaagacctaggggcgg	15	10	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	150174567	150174567	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.1697	p.R566Q	0.346	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	25	0	0	21	25	54.35	-	-	-	A	150174567	G	A	150174567	3	1	151	1	0	0	0	0	1	0	0	0	6437	1116	39	1	1711	1	GIMAP8	7	150174567	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	1002844	150174567	8964096	87	8946										
UBE3C	0	genome.wustl.edu	37	chr7	157000483	157000483	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gccttcgagatgcatgcctgGggatcatcaagttggcttat	12	9	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	7	157000483	157000483	G	C	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	missense	c.1663	p.G555R	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	60	0	0	111	21	15.91	-	-	-	C	157000483	G	C	157000483	3	2	151	1	0	0	0	0	1	0	0	0	16978	1232	43	4	1713	4	UBE3C	7	157000483	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	6825916	157000483	2138180	88	8947										
AP3M2	0	genome.wustl.edu	37	chr8	42012400	42012400	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtttaccgccacaagatcttTtttgtggccgtgatccagac	9	11	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	42012400	42012400	T	C	SNP	AP3M2	ENST00000174653	human	ensembl	69_37n	1	known	silent	c.195	p.F65	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718	67	0	0	81	14	14.74	-	-	-	C	42012400	T	C	42012400	2	2	151	1	0	0	0	0	0	0	0	1	749	1838	64	5		5	AP3M2	8	42012400	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09		42012400	104351622	89	8948										
UBE2V2	0	genome.wustl.edu	37	chr8	48921029	48921029	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gagaagatggcggtctccacAggtcggttcccgggccgggc	17	12	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	48921029	48921029	A	C	SNP	UBE2V2	ENST00000523111	human	ensembl	69_37n	1	known	silent	c.15	p.T5	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2V2	HGNC	ENSG00000169139	127	0	0	108	27	20	-	-	-	C	48921029	A	C	48921029	2	2	151	1	0	0	0	0	0	0	0	1	16973	202	7	5		5	UBE2V2	8	48921029	Silent	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	6908629	48921029	97442993	90	8949										
RBM12B	0	genome.wustl.edu	37	chr8	94746523	94746523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctcaggggaatgcctgaaatCctcctctgggggccgcctga	13	13	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	94746523	94746523	C	T	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	missense	c.2116	p.D706N	0.986	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	38	0	0	62	21	25.3	-	-	-	T	94746523	C	T	94746523	3	4	151	1	0	0	0	0	1	0	0	0	13197	855	30	2	893	2	RBM12B	8	94746523	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	45825494	94746523	51617499	91	8950										
RBM12B	0	genome.wustl.edu	37	chr8	94746790	94746790	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaggggcctcctccagtcctCctccctagggtgcctgaagt	11	15	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	94746790	94746790	C	A	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	nonsense	c.1849	p.E617*	0.349	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	63	0	0	86	16	15.53	-	-	-	A	94746790	C	A	94746790	4	1	151	1	0	0	0	0	0	1	0	0	13197	864	30	2	1160	2	RBM12B	8	94746790	Nonsense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	267	94746790	51617232	92	8951										
VPS13B	0	genome.wustl.edu	37	chr8	100523446	100523446	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	taacatcaagaaatgagcgaAgaagttttcataagttatct	7	5	3	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	100523446	100523446	A	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.4414	p.R1472	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	23	0	0	38	7	15.56	-	-	-	C	100523446	A	C	100523446	2	2	151	1	0	0	0	0	0	0	0	1	17287	64	3	5		5	VPS13B	8	100523446	Silent	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	5776656	100523446	45840576	93	8952										
SNX31	0	genome.wustl.edu	37	chr8	101642561	101642561	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aagagcaagcttaccagctgCgccagttttaaaaactcaac	7	11	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	101642561	101642561	C	T	SNP	SNX31	ENST00000311812	human	ensembl	69_37n	-1	known	silent	c.315	p.A105	0.008	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX31	HGNC	ENSG00000174226	29	0	0	35	27	43.55	-	-	-	T	101642561	C	T	101642561	2	4	151	1	0	0	0	0	0	0	0	1	14990	755	27	1		1	SNX31	8	101642561	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	1119115	101642561	44721461	94	8953										
SLC25A32	0	genome.wustl.edu	37	chr8	104414317	104414317	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tttttaaaaagcaaaacaacAtacgtttgaagaacaatata	4	5	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	104414317	104414317	A	G	SNP	SLC25A32	ENST00000523701	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A32	HGNC	ENSG00000164933	15	0	0	33	11	24.44	-	-	-	G	104414317	A	G	104414317	1	3	151	0	1	0	0	0	0	0	0	0	14585	232	8	5		5	SLC25A32	8	104414317	RNA	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	2771756	104414317	41949705	95	8954										
ZNF572	0	genome.wustl.edu	37	chr8	125989335	125989335	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaaaaaccttataagtgcccTgattgtgggaagagttttag	11	5	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	125989335	125989335	T	C	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	silent	c.825	p.P275	0.065	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	32	0	0	45	6	11.76	-	-	-	C	125989335	T	C	125989335	2	2	151	1	0	0	0	0	0	0	0	1	18100	1567	55	5		5	ZNF572	8	125989335	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	21575018	125989335	20374687	96	8955										
ADCY8	0	genome.wustl.edu	37	chr8	131862032	131862032	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	taatcagaatggagaactggAtggtcattggcatcactctg	11	7	4	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	8	131862032	131862032	A	C	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.2228	p.I743S	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	24	0	0	39	17	30.36	-	-	-	C	131862032	A	C	131862032	3	2	151	1	0	0	0	0	1	0	0	0	300	333	12	5	1563	5	ADCY8	8	131862032	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	5872697	131862032	14501990	97	8956										
NFX1	0	genome.wustl.edu	37	chr9	33344082	33344082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	accaggttttgatgaattaaCctgccattgtggtgcatcag	10	8	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	33344082	33344082	C	T	SNP	NFX1	ENST00000379540	human	ensembl	69_37n	1	known	missense	c.2240	p.T747I	1.000	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102	65	0	0	41	26	38.81	-	-	-	T	33344082	C	T	33344082	3	4	151	1	0	0	0	0	1	0	0	0	10459	507	18	4	2294	4	NFX1	9	33344082	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		33344082	107869349	98	8957										
NPR2	0	genome.wustl.edu	37	chr9	35806119	35806119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tttccggccaagcattgaccGgacccaactgaatgaagagc	10	12	0	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	35806119	35806119	G	A	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.2261	p.R754Q	0.258	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	51	0	0	30	15	33.33	-	-	-	A	35806119	G	A	35806119	3	1	151	1	0	0	0	0	1	0	0	0	10668	1116	39	1	2319	1	NPR2	9	35806119	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	2462037	35806119	105407312	99	8958										
TRPM6	0	genome.wustl.edu	37	chr9	77354692	77354692	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaagattttatgccatgtccGcacaacctcaggaagaaagg	10	9	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	77354692	77354692	G	C	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.5446	p.R1816G	0.767	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	46	0	0	31	20	39.22	-	-	-	C	77354692	G	C	77354692	3	2	151	1	0	0	0	0	1	0	0	0	16686	1086	38	3	658	3	TRPM6	9	77354692	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	41548573	77354692	63858739	100	8959										
RMI1	0	genome.wustl.edu	37	chr9	86617537	86617537	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	catatctagatgtagactttGtggatgaaatacttactagc	8	6	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	86617537	86617537	G	C	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	missense	c.1636	p.V546L	0.975	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	44	0	0	15	16	51.61	-	-	-	C	86617537	G	C	86617537	3	2	151	1	0	0	0	0	1	0	0	0	13481	1377	48	4	1638	4	RMI1	9	86617537	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	9262845	86617537	54595894	101	8960										
HEMGN	0	genome.wustl.edu	37	chr9	100693415	100693415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cttttctatctgtggctgagGctccaccttcaattctgtgt	8	11	4	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	100693415	100693415	G	A	SNP	HEMGN	ENST00000259456	human	ensembl	69_37n	-1	known	missense	c.262	p.P88S	0.012	NULL	NULL	-	no_errors	HEMGN	HGNC	ENSG00000136929	33	0	0	31	12	27.91	-	-	-	A	100693415	G	A	100693415	3	1	151	1	0	0	0	0	1	0	0	0	7101	1203	42	4	1200	4	HEMGN	9	100693415	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	14075878	100693415	40520016	102	8961										
COL27A1	0	genome.wustl.edu	37	chr9	117068771	117068771	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gctggaccaggaccctaaggTcccaatgaccaccctctcct	8	17	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	117068771	117068771	T	A	SNP	COL27A1	ENST00000490831	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739	58	0	0	45	18	28.12	-	-	-	A	117068771	T	A	117068771	1	1	151	0	1	0	0	0	0	0	0	0	3715	1682	58	5		5	COL27A1	9	117068771	RNA	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	16375356	117068771	24144660	103	8962										
RABGAP1	0	genome.wustl.edu	37	chr9	125772723	125772723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaagagagaggaggaaaactAcagccagtccttcagttcgc	11	9	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	125772723	125772723	A	G	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	missense	c.1465	p.T489A	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	27	0	0	26	11	29.73	-	-	-	G	125772723	A	G	125772723	3	3	151	1	0	0	0	0	1	0	0	0	13047	391	14	5	1503	5	RABGAP1	9	125772723	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	8703952	125772723	15440708	104	8963										
C9orf114	0	genome.wustl.edu	37	chr9	131592034	131592034	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccgcacttaccgggccgcacGgccgcttcctgccgcgctcc	11	21	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	131592034	131592034	G	C	SNP	C9orf114	ENST00000361256	human	ensembl	69_37n	-1	known	missense	c.26	p.P9R	0.988	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	-	no_errors	C9orf114	HGNC	ENSG00000198917	47	0	0	28	13	31.71	-	-	-	C	131592034	G	C	131592034	3	2	151	1	0	0	0	0	1	0	0	0	2474	1116	39	3	1152	3	C9orf114	9	131592034	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	5819311	131592034	9621397	105	8964										
IER5L	0	genome.wustl.edu	37	chr9	131939194	131939194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcacagctgcccgttgagcgGcggcggctgctccgaggagt	17	13	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	131939194	131939194	G	T	SNP	IER5L	ENST00000372491	human	ensembl	69_37n	-1	known	missense	c.1138	p.P380T	1.000	pfam_IER	pfam_IER	-	no_errors	IER5L	HGNC	ENSG00000188483	9	0	0	7	5	41.67	-	-	-	T	131939194	G	T	131939194	3	4	151	1	0	0	0	0	1	0	0	0	7563	1203	42	4	80	4	IER5L	9	131939194	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	347160	131939194	9274237	106	8965										
RXRA	0	genome.wustl.edu	37	chr9	137330373	137330373	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tggccccctgcccgatccacCgtcctgaggcagagtgttga	12	15	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	137330373	137330373	C	G	SNP	RXRA	ENST00000356384	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	54	0	0	15	9	37.5	-	-	-	G	137330373	C	G	137330373	1	3	151	0	1	0	0	0	0	0	0	0	13849	667	23	3		3	RXRA	9	137330373	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	5391179	137330373	3883058	107	8966										
DPP7	0	genome.wustl.edu	37	chr9	140007473	140007473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtagtccatcatggccagcaCggtgaaggcattccgggcga	14	11	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	9	140007473	140007473	C	T	SNP	DPP7	ENST00000371579	human	ensembl	69_37n	-1	known	missense	c.802	p.V268M	0.056	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978	84	0	0	14	42	75	-	-	-	T	140007473	C	T	140007473	3	4	151	1	0	0	0	0	1	0	0	0	4766	536	19	1	704	1	DPP7	9	140007473	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	2677100	140007473	1205958	108	8967										
GPR158	0	genome.wustl.edu	37	chr10	25888838	25888838	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcagctattcaattgttattGcaccttacagaatacctgct	6	10	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	25888838	25888838	G	C	SNP	GPR158	ENST00000490549	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GPR158	HGNC	ENSG00000151025	49	0	0	21	13	37.14	-	-	-	C	25888838	G	C	25888838	1	2	151	0	1	0	0	0	0	0	0	0	6713	1334	46	4		4	GPR158	10	25888838	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		25888838	109645909	109	8968										
ACBD5	0	genome.wustl.edu	37	chr10	27529276	27529276	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ggcaaactctggatcaccttCacggccgcctcaaacctagt	8	15	4	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	27529276	27529276	C	T	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	silent	c.147	p.V49	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	43	0	0	41	7	14.58	-	-	-	T	27529276	C	T	27529276	2	4	151	1	0	0	0	0	0	0	0	1	125	813	29	2		2	ACBD5	10	27529276	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	1640438	27529276	108005471	110	8969										
C10orf68	0	genome.wustl.edu	37	chr10	32983901	32983901	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaaaaaaccaaaaaacttccTagagagaaaagacatagtag	7	6	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	32983901	32983901	T	C	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	silent	c.360	p.P120	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	14	0	0	13	9	40.91	-	-	-	C	32983901	T	C	32983901	2	2	151	1	0	0	0	0	0	0	0	1	1623	1509	53	5		5	C10orf68	10	32983901	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	5454625	32983901	102550846	111	8970										
DNAJB12	0	genome.wustl.edu	37	chr10	74097985	74097985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tggactcagactgtagggtgGactggagaccatgagctggc	16	8	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	74097985	74097985	G	T	SNP	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	missense	c.910	p.P304T	1.000	pfam_DUF1977_DnaJ-like	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	44	0	0	30	4	11.76	-	-	-	T	74097985	G	T	74097985	3	4	151	1	0	0	0	0	1	0	0	0	4652	1174	41	2	331	2	DNAJB12	10	74097985	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	41114084	74097985	61436762	112	8971										
LIPN	0	genome.wustl.edu	37	chr10	90537925	90537925	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgccagattggaaccactttGattttgtctggggcctcgat	11	9	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	90537925	90537925	G	C	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.1123	p.D375H	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	66	0	0	29	20	40.82	-	-	-	C	90537925	G	C	90537925	3	2	151	1	0	0	0	0	1	0	0	0	8884	1290	45	2	1157	2	LIPN	10	90537925	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	16439940	90537925	44996822	113	8972										
CUEDC2	0	genome.wustl.edu	37	chr10	104184498	104184498	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tctgatgggcccgaggggccCaggtcctccaggaccccaag	14	15	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	104184498	104184498	C	A	SNP	CUEDC2	ENST00000369937	human	ensembl	69_37n	-1	known	silent	c.126	p.L42	1.000	NULL	pfam_CUE,superfamily_UBA-like,pfscan_CUE	-	no_errors	CUEDC2	HGNC	ENSG00000107874	23	0	0	5	10	66.67	-	-	-	A	104184498	C	A	104184498	2	1	151	1	0	0	0	0	0	0	0	1	4084	581	21	4		4	CUEDC2	10	104184498	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	13646573	104184498	31350249	114	8973										
NT5C2	0	genome.wustl.edu	37	chr10	104860650	104860650	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgcatggagctgctggtgctGtcccatctctcaggttggca	13	11	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	10	104860650	104860650	G	C	SNP	NT5C2	ENST00000552185	human	ensembl	69_37n	-1	known	missense	c.393	p.D131E	1.000	NULL	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5C2	HGNC	ENSG00000076685	10	0	0	4	6	60	-	-	-	C	104860650	G	C	104860650	3	2	151	1	0	0	0	0	1	0	0	0	10760	1392	48	4		4	NT5C2	10	104860650	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	676152	104860650	30674097	115	8974										
RIC8A	0	genome.wustl.edu	37	chr11	209307	209307	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cgtttgatgatgcccaacagGaggaccggaaggtgggtgct	16	8	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	209307	209307	G	T	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	nonsense	c.121	p.E41*	0.998	NULL	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	123	0	0	48	29	37.66	-	-	-	T	209307	G	T	209307	4	4	151	1	0	0	0	0	0	1	0	0	13439	1175	41	2	127	2	RIC8A	11	209307	Nonsense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		209307	134797209	116	8975			1	18		3	3	1264	G		3.177771e-05
RIC8A	0	genome.wustl.edu	37	chr11	209710	209710	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcctagtggtgaagctcacaGagcgtgtggggctgtaccgt	16	9	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	209710	209710	G	T	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	nonsense	c.436	p.E146*	0.276	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	113	0	0	28	23	45.1	-	-	-	T	209710	G	T	209710	4	4	151	1	0	0	0	0	0	1	0	0	13439	943	33	2	446	2	RIC8A	11	209710	Nonsense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	403	209710	134796806	117	8976			1	18		3	3	1264	G		3.177771e-05
RIC8A	0	genome.wustl.edu	37	chr11	210570	210570	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aacccttctttctttggtcaGgaagacgctgccctttaccg	8	13	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	210570	210570	G	C	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	splice_site	c.727-1	e4-1	1.000	-	-	-	no_errors	RIC8A	HGNC	ENSG00000177963	60	0	0	25	15	37.5	-	-	-	C	210570	G	C	210570	5	2	151	1	0	0	0	0	0	0	1	0	13439	1014	35	4	740	4	RIC8A	11	210570	Splice_Site	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	860	210570	134795946	118	8977			1	18		3	3	1264	G		3.177771e-05
MUC5B	0	genome.wustl.edu	37	chr11	1262924	1262924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagtgacgaccactgcagggGacgtgccacaaccccgccac	11	17	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	1262924	1262924	G	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.4823	p.G1608V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	27	0	0	9	5	35.71	-	-	-	T	1262924	G	T	1262924	3	4	151	1	0	0	0	0	1	0	0	0	10051	1174	41	2	4945	2	MUC5B	11	1262924	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	1052354	1262924	133743592	119	8978										
OR52L1	0	genome.wustl.edu	37	chr11	6007653	6007653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ggggataaggagtagtaatcCcctcaccagcaccaccattc	9	13	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	6007653	6007653	C	T	SNP	OR52L1	ENST00000332249	human	ensembl	69_37n	-1	known	missense	c.508	p.G170R	0.025	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313	48	0	0	9	51	85	-	-	-	T	6007653	C	T	6007653	3	4	151	1	0	0	0	0	1	0	0	0	11198	632	22	4	485	4	OR52L1	11	6007653	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	4744729	6007653	128998863	120	8979										
NUCB2	0	genome.wustl.edu	37	chr11	17332417	17332417	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acaagactcgtcatgaagaaTttaaaaaatatgaaatgatg	7	4	1	5			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	17332417	17332417	T	G	SNP	NUCB2	ENST00000323688	human	ensembl	69_37n	1	known	missense	c.529	p.F177V	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NUCB2	HGNC	ENSG00000070081	15	0	0	10	8	44.44	-	-	-	G	17332417	T	G	17332417	3	3	151	1	0	0	0	0	1	0	0	0	10792	1493	52	5	547	5	NUCB2	11	17332417	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	11324764	17332417	117674099	121	8980										
HPS5	0	genome.wustl.edu	37	chr11	18309142	18309142	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aggccaaaaactcagcaggaTgatgatgacaaagttgtatg	11	6	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	18309142	18309142	T	C	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.2657	p.H886R	0.889	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	22	0	0	9	11	52.38	-	-	-	C	18309142	T	C	18309142	3	2	151	1	0	0	0	0	1	0	0	0	7393	1464	51	5	756	5	HPS5	11	18309142	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	976725	18309142	116697374	122	8981										
PTPN5	0	genome.wustl.edu	37	chr11	18763852	18763852	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gacggtgagtgaggtggggtCagcctcaggcttgatgtcca	17	8	2	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	18763852	18763852	C	T	SNP	PTPN5	ENST00000358540	human	ensembl	69_37n	-1	known	missense	c.682	p.D228N	0.999	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	55	0	0	15	16	51.61	-	-	-	T	18763852	C	T	18763852	3	4	151	1	0	0	0	0	1	0	0	0	12874	826	29	2	1051	2	PTPN5	11	18763852	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	454710	18763852	116242664	123	8982										
WT1	0	genome.wustl.edu	37	chr11	32439157	32439157	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcctaagttcatctgattccAggtcatgcattcaagctggg	9	10	4	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	32439157	32439157	A	T	SNP	WT1	ENST00000332351	human	ensembl	69_37n	-1	known	missense	c.916	p.W306R	1.000	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,prints_Wilms_tumour,pfscan_Znf_C2H2	-	no_errors	WT1	HGNC	ENSG00000184937	46	0	0	22	19	46.34	-	-	-	T	32439157	A	T	32439157	3	4	151	1	0	0	0	0	1	0	0	0	17505	188	7	5	665	5	WT1	11	32439157	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	13675305	32439157	102567359	124	8983										
CAT	0	genome.wustl.edu	37	chr11	34470811	34470811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atgttattacagtagggcccCgtgggccccttcttgttcag	11	11	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	34470811	34470811	C	G	SNP	CAT	ENST00000241052	human	ensembl	69_37n	1	known	missense	c.139	p.R47G	0.897	pfam_Catalase_core,superfamily_Catalase-like_dom,prints_Catalase	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691	53	0	0	65	19	22.62	-	-	-	G	34470811	C	G	34470811	3	3	151	1	0	0	0	0	1	0	0	0	2711	652	23	3	145	3	CAT	11	34470811	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	2031654	34470811	100535705	125	8984										
OR8K1	0	genome.wustl.edu	37	chr11	56114431	56114431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaacaaagaagtaaaagatgCtctaaagagaactttaacca	7	6	1	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	56114431	56114431	C	A	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.917	p.A306D	0.006	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	24	0	0	9	5	35.71	-	-	-	A	56114431	C	A	56114431	3	1	151	1	0	0	0	0	1	0	0	0	11316	797	28	4	919	4	OR8K1	11	56114431	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	21643620	56114431	78892085	126	8985										
PRG3	0	genome.wustl.edu	37	chr11	57147150	57147150	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcttgacaggcagaagccttGacctcctctccctctgcctg	8	16	3	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	11	57147150	57147150	G	A	SNP	PRG3	ENST00000287143	human	ensembl	69_37n	-1	known	silent	c.192	p.V64	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575	54	0	0	33	14	29.79	-	-	-	A	57147150	G	A	57147150	2	1	151	1	0	0	0	0	0	0	0	1	12561	1277	45	2		2	PRG3	11	57147150	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	1032719	57147150	77859366	127	8986										
SLC6A13	0	genome.wustl.edu	37	chr12	352957	352957	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccacaggtaaagaggaagacGaggtaggggatgaagaaggc	17	5	0	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	352957	352957	G	A	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	silent	c.225	p.L75	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	67	0	0	67	34	33.66	-	-	-	A	352957	G	A	352957	2	1	151	1	0	0	0	0	0	0	0	1	14765	1045	37	1		1	SLC6A13	12	352957	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		352957	133498938	128	8987										
FBXL14	0	genome.wustl.edu	37	chr12	1702198	1702198	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcgatcagctccaggcccttGtccgtgatgcgcacacactg	11	15	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	1702198	1702198	G	C	SNP	FBXL14	ENST00000339235	human	ensembl	69_37n	-1	known	missense	c.1035	p.D345E	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823	91	0	0	81	26	24.3	-	-	-	C	1702198	G	C	1702198	3	2	151	1	0	0	0	0	1	0	0	0	5756	1368	48	4	229	4	FBXL14	12	1702198	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	1349241	1702198	132149697	129	8988										
A2ML1	0	genome.wustl.edu	37	chr12	9006836	9006836	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gacacgctcatcaagccagtTctcgtcaaagtgagttttct	8	11	5	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	9006836	9006836	T	C	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	silent	c.2703	p.V901	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	41	0	0	42	11	20.75	-	-	-	C	9006836	T	C	9006836	2	2	151	1	0	0	0	0	0	0	0	1	5	1770	62	5		5	A2ML1	12	9006836	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	7304638	9006836	124845059	130	8989										
H2AFJ	0	genome.wustl.edu	37	chr12	14927767	14927767	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtgctgctgcccaagaagacGgagagtcagaagacgaagag	15	8	1	6			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	14927767	14927767	G	A	SNP	H2AFJ	ENST00000389078	human	ensembl	69_37n	1	known	silent	c.363	p.T121	0.838	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFJ	HGNC	ENSG00000246705	86	0	0	82	25	23.36	-	-	-	A	14927767	G	A	14927767	2	1	151	1	0	0	0	0	0	0	0	1	6977	1103	39	1		1	H2AFJ	12	14927767	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	5920931	14927767	118924128	131	8990										
GOLT1B	0	genome.wustl.edu	37	chr12	21654806	21654806	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	catttctcccgactcagcttCccaccctgggctttccgagg	8	17	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	21654806	21654806	C	T	SNP	GOLT1B	ENST00000535593	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOLT1B	HGNC	ENSG00000111711	131	0	0	69	36	34.29	-	-	-	T	21654806	C	T	21654806	1	4	151	0	1	0	0	0	0	0	0	0	6620	870	30	2		2	GOLT1B	12	21654806	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	6727039	21654806	112197089	132	8991										
ITPR2	0	genome.wustl.edu	37	chr12	26592110	26592110	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgtagagatcttctgtttgcTggaaaaagtcattcacttta	8	6	4	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	26592110	26592110	T	A	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.6593	p.Q2198L	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	79	0	0	60	96	61.54	-	-	-	A	26592110	T	A	26592110	3	1	151	1	0	0	0	0	1	0	0	0	7975	1580	55	5	1556	5	ITPR2	12	26592110	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	4937304	26592110	107259785	133	8992										
ITPR2	0	genome.wustl.edu	37	chr12	26834906	26834906	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agtctaagtctcgaacttcaGacagtggaacagacacgatt	9	9	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	26834906	26834906	G	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.1310	p.S437C	1.000	prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	38	0	0	110	22	16.67	-	-	-	C	26834906	G	C	26834906	3	2	151	1	0	0	0	0	1	0	0	0	7975	942	33	2	6975	2	ITPR2	12	26834906	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	242796	26834906	107016989	134	8993			2	19		2	2	13	G		7.597426e-05
ITPR2	0	genome.wustl.edu	37	chr12	26834918	26834918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaacttcagacagtggaacaGacacgattgcgaacgcttct	10	10	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	26834918	26834918	G	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.1298	p.S433C	0.999	superfamily_MIR,prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	42	0	0	119	21	15	-	-	-	C	26834918	G	C	26834918	3	2	151	1	0	0	0	0	1	0	0	0	7975	942	33	2	6987	2	ITPR2	12	26834918	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	12	26834918	107016977	135	8994			2	19		2	2	13	G		7.597426e-05
CCDC91	0	genome.wustl.edu	37	chr12	28605484	28605484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaaaaatttagaaaaagcgcAtgctgaagaaagggaattat	9	3	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	28605484	28605484	A	G	SNP	CCDC91	ENST00000381259	human	ensembl	69_37n	1	known	missense	c.998	p.H333R	1.000	NULL	NULL	-	no_errors	CCDC91	HGNC	ENSG00000123106	16	0	0	17	16	48.48	-	-	-	G	28605484	A	G	28605484	3	3	151	1	0	0	0	0	1	0	0	0	2897	217	8	5	1036	5	CCDC91	12	28605484	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	1770566	28605484	105246411	136	8995										
PKP2	0	genome.wustl.edu	37	chr12	32977060	32977060	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agtccgtcacatcttctcatCgcttttctcccatcagcgcc	5	17	5	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	32977060	32977060	C	G	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	silent	c.1725	p.A575	0.980	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	37	0	0	47	18	27.69	-	-	-	G	32977060	C	G	32977060	2	3	151	1	0	0	0	0	0	0	0	1	12059	871	31	3		3	PKP2	12	32977060	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	4371576	32977060	100874835	137	8996										
SLC38A2	0	genome.wustl.edu	37	chr12	46765205	46765205	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcaggaccgcagcgccagccCgccgcggtcacgtgacgccg	14	18	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	46765205	46765205	C	A	SNP	SLC38A2	ENST00000547252	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SLC38A2	HGNC	ENSG00000134294	22	0	0	4	7	63.64	-	-	-	A	46765205	C	A	46765205	1	1	151	0	1	0	0	0	0	0	0	0	14693	667	23	3		3	SLC38A2	12	46765205	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	13788145	46765205	87086690	138	8997										
KRT2	0	genome.wustl.edu	37	chr12	53045616	53045618	+	In_Frame_Del	DEL	CCT	CCT	-													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caccactgaagccgctgccaCctccaaagctgctgccgcct							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	53045616	53045618	CCT	-	DEL	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	in_frame_del	c.311_309	p.G105in_frame_del	0.910:0.878:0.850	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	133	0	0	59	20	25	-	-	-	-	53045618	CCT	-	53045616	7	5	151	1	0	1	0	1	0	0	0	0	8510	507	18	0	1644	0	KRT2	12	53045616	In_Frame_Del	DEL	CCT	TCGA-A7-A5ZV-01A-11D-A28B-09	6280411	53045616	80806279	139	8998										
MYO1A	0	genome.wustl.edu	37	chr12	57424899	57424899	+	Frame_Shift_Del	DEL	C	C	-													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tagggggcggctggccatgtCttgtctaagacgtttgtgga							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	57424899	57424899	C	-	DEL	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	frame_shift_del	c.2409	p.T804fs	0.058	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	60	0	0	27	13	32.5	-	-	-	-	57424899	C	-	57424899	7	5	151	1	0	1	0	1	0	0	0	0	10140	912	32	0	746	0	MYO1A	12	57424899	Frame_Shift_Del	DEL	C	TCGA-A7-A5ZV-01A-11D-A28B-09	4379283	57424899	76426996	140	8999										
NUP107	0	genome.wustl.edu	37	chr12	69107580	69107580	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaagtgttcgtccgcttgtcActgaattggtaaatgttctt	10	7	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	69107580	69107580	A	C	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.961	p.T321P	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	20	0	0	10	9	47.37	-	-	-	C	69107580	A	C	69107580	3	2	151	1	0	0	0	0	1	0	0	0	10826	159	6	5	1003	5	NUP107	12	69107580	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	11682681	69107580	64744315	141	9000										
KERA	0	genome.wustl.edu	37	chr12	91449978	91449978	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcatctgaatcatgtacttcAtagacctgcctcacacttct	4	13	6	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	91449978	91449978	A	G	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	silent	c.81	p.Y27	0.916	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	26	0	0	12	15	55.56	-	-	-	G	91449978	A	G	91449978	2	3	151	1	0	0	0	0	0	0	0	1	8196	224	8	5		5	KERA	12	91449978	Silent	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	22342398	91449978	42401917	142	9001										
GPR133	0	genome.wustl.edu	37	chr12	131623712	131623712	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcatccctttatgctttgcaGatgaatgggacccggccagg	11	11	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	12	131623712	131623712	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	splice_site	c.2530-1	e25-1	1.000	-	-	-	no_errors	GPR133	HGNC	ENSG00000111452	55	0	0	31	14	31.11	-	-	-	A	131623712	G	A	131623712	5	1	151	1	0	0	0	0	0	0	1	0	6693	956	33	2	2627	2	GPR133	12	131623712	Splice_Site	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	40173734	131623712	2228183	143	9002										
IL17D	0	genome.wustl.edu	37	chr13	21277444	21277444	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaagcgctttcgggggagaaGatgttgggggcactggtgag	19	5	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	13	21277444	21277444	G	T	SNP	IL17D	ENST00000498088	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	IL17D	HGNC	ENSG00000172458	37	0	0	15	3	16.67	-	-	-	T	21277444	G	T	21277444	1	4	151	0	1	0	0	0	0	0	0	0	7691	957	33	2		2	IL17D	13	21277444	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		21277444	93892434	144	9003										
SOHLH2	0	genome.wustl.edu	37	chr13	36744912	36744912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	caatagcattctctgaggcgGagcttgatggaactttaatg	11	7	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	13	36744912	36744912	G	A	SNP	SOHLH2	ENST00000554962	human	ensembl	69_37n	-1	known	missense	c.1244	p.S415F	0.804	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH2	HGNC	ENSG00000120669	32	0	0	11	7	38.89	-	-	-	A	36744912	G	A	36744912	3	1	151	1	0	0	0	0	1	0	0	0	15013	1174	41	2	272	2	SOHLH2	13	36744912	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	15467468	36744912	78424966	145	9004										
KLHL1	0	genome.wustl.edu	37	chr13	70281842	70281842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agccaccaacagcatataatCtgtcaccaaggagacagacc	7	13	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	13	70281842	70281842	C	G	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.2102	p.R701T	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	49	0	0	12	48	80	-	-	-	G	70281842	C	G	70281842	3	3	151	1	0	0	0	0	1	0	0	0	8418	913	32	2	152	2	KLHL1	13	70281842	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	33536930	70281842	44888036	146	9005										
LMO7	0	genome.wustl.edu	37	chr13	76381850	76381850	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttccatgcaaatccatatgtTctccgagcttttgaagactt	6	10	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	13	76381850	76381850	T	A	SNP	LMO7	ENST00000447038	human	ensembl	69_37n	1	novel	missense	c.457	p.S153T	0.788	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon	LMO7	HGNC	ENSG00000136153	28	0	0	11	12	52.17	-	-	-	A	76381850	T	A	76381850	3	1	151	1	0	0	0	0	1	0	0	0	8911	1770	62	5	1629	5	LMO7	13	76381850	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	6100008	76381850	38788028	147	9006										
POU4F1	0	genome.wustl.edu	37	chr13	79175956	79175956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccgagcccacgtcggcctgcGtcacgcccagcttgatgcgc	12	18	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	13	79175956	79175956	G	A	SNP	POU4F1	ENST00000377208	human	ensembl	69_37n	-1	known	missense	c.854	p.T285M	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192	89	0	0	36	21	36.84	-	-	-	A	79175956	G	A	79175956	3	1	151	1	0	0	0	0	1	0	0	0	12351	1145	40	1	409	1	POU4F1	13	79175956	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	2794106	79175956	35993922	148	9007										
TSSK4	0	genome.wustl.edu	37	chr14	24677147	24677147	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atggagaaaaactcaggcaaGacctctctctcccctgctct	7	14	4	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	14	24677147	24677147	G	T	SNP	TSSK4	ENST00000553766	human	ensembl	69_37n	1	putative	missense	c.304	p.D102Y	0.997	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSSK4	HGNC	ENSG00000139908	51	0	0	18	11	37.93	-	-	-	T	24677147	G	T	24677147	3	4	151	1	0	0	0	0	1	0	0	0	16767	957	33	2		2	TSSK4	14	24677147	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		24677147	82672393	149	9008										
DMXL2	0	genome.wustl.edu	37	chr15	51756941	51756941	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctggtccagctcccactgaaAggtcagttggatatgtgttg	12	9	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	51756941	51756941	A	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.7739	p.L2580H	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	34	0	0	20	29	59.18	-	-	-	T	51756941	A	T	51756941	3	4	151	1	0	0	0	0	1	0	0	0	4631	72	3	5	1422	5	DMXL2	15	51756941	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09		51756941	50774451	150	9009										
SNX1	0	genome.wustl.edu	37	chr15	64415706	64415706	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tcttgttctctcacaggggaTggtatgaatgcatatgtagc	11	7	3	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	64415706	64415706	T	C	SNP	SNX1	ENST00000559844	human	ensembl	69_37n	1	known	silent	c.471	p.D157	0.993	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX1	HGNC	ENSG00000028528	80	0	0	42	33	44	-	-	-	C	64415706	T	C	64415706	2	2	151	1	0	0	0	0	0	0	0	1	14969	1461	51	5		5	SNX1	15	64415706	Silent	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	12658765	64415706	38115686	151	9010										
CSNK1G1	0	genome.wustl.edu	37	chr15	64495365	64495365	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcagatgcaccagaatctacGtgaactgaccctactggagt	10	11	1	4			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	64495365	64495365	G	A	SNP	CSNK1G1	ENST00000303052	human	ensembl	69_37n	-1	known	silent	c.1023	p.H341	1.000	pfam_Casein_kinase-1_gamma_C	pfam_Prot_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1G1	HGNC	ENSG00000169118	70	0	0	30	17	36.17	-	-	-	A	64495365	G	A	64495365	2	1	151	1	0	0	0	0	0	0	0	1	3986	1136	40	1		1	CSNK1G1	15	64495365	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	79659	64495365	38036027	152	9011										
CORO2B	0	genome.wustl.edu	37	chr15	69018290	69018290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agctggaactgaaaaacttgCgcaacagccccaagaactgt	9	11	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	69018290	69018290	C	T	SNP	CORO2B	ENST00000566799	human	ensembl	69_37n	1	known	missense	c.1420	p.R474C	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2B	HGNC	ENSG00000103647	23	0	0	10	8	44.44	-	-	-	T	69018290	C	T	69018290	3	4	151	1	0	0	0	0	1	0	0	0	3787	768	27	1	1466	1	CORO2B	15	69018290	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	4522925	69018290	33513102	153	9012										
AGBL1	0	genome.wustl.edu	37	chr15	86810230	86810230	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tttcattgtaggcctttgcaAgacaatgcttccaattgttt	7	8	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	86810230	86810230	A	G	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	silent	c.1623	p.Q541	0.127	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	23	0	0	26	15	36.59	-	-	-	G	86810230	A	G	86810230	2	3	151	1	0	0	0	0	0	0	0	1	375	69	3	5		5	AGBL1	15	86810230	Silent	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	17791940	86810230	15721162	154	9013										
TTC23	0	genome.wustl.edu	37	chr15	99740201	99740201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	taattctctcaatatgggtaCacactcacgacttgtttcac	5	11	4	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	15	99740201	99740201	C	T	SNP	TTC23	ENST00000262074	human	ensembl	69_37n	-1	known	missense	c.682	p.V228I	0.982	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852	42	0	0	6	14	70	-	-	-	T	99740201	C	T	99740201	3	4	151	1	0	0	0	0	1	0	0	0	16787	478	17	4	685	4	TTC23	15	99740201	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	12929971	99740201	2791191	155	9014										
ATP2A1	0	genome.wustl.edu	37	chr16	28913614	28913614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccacagccctgggcttcaacCcaccagacctggacatcatg	8	17	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	28913614	28913614	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.2431	p.P811S	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	162	0	0	112	39	25.83	-	-	-	T	28913614	C	T	28913614	3	4	151	1	0	0	0	0	1	0	0	0	1140	623	22	4	2497	4	ATP2A1	16	28913614	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		28913614	61441139	156	9015										
BCL7C	0	genome.wustl.edu	37	chr16	30904206	30904206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gccaccccctcggggactggCgcccctgccccgacgttccc	11	22	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	30904206	30904206	C	T	SNP	BCL7C	ENST00000380317	human	ensembl	69_37n	-1	known	missense	c.235	p.A79T	0.130	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385	36	0	0	17	12	41.38	-	-	-	T	30904206	C	T	30904206	3	4	151	1	0	0	0	0	1	0	0	0	1384	768	27	1	434	1	BCL7C	16	30904206	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	1990592	30904206	59450547	157	9016										
ADCY7	0	genome.wustl.edu	37	chr16	50341022	50341022	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ctgcgccagcctgatcttcgTctgcatcctgctcgtccatg	9	16	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	50341022	50341022	T	G	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.1814	p.V605G	0.959	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	74	0	0	49	18	26.87	-	-	-	G	50341022	T	G	50341022	3	3	151	1	0	0	0	0	1	0	0	0	299	1667	58	5	1868	5	ADCY7	16	50341022	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	19436816	50341022	40013731	158	9017										
NLRC5	0	genome.wustl.edu	37	chr16	57068128	57068128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gatgcggaggccctcatagcCctgctccaggaaggccctca	12	15	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	57068128	57068128	C	T	SNP	NLRC5	ENST00000545081	human	ensembl	69_37n	1	known	missense	c.1774	p.P592S	0.207	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	105	0	0	67	35	34.31	-	-	-	T	57068128	C	T	57068128	3	4	151	1	0	0	0	0	1	0	0	0	10542	610	22	4	2634	4	NLRC5	16	57068128	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	6727106	57068128	33286625	159	9018										
FTSJD1	0	genome.wustl.edu	37	chr16	71318220	71318220	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gctgttttggcctaaacttgGaatccaaattaaaagctcct	7	9	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	71318220	71318220	G	C	SNP	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	missense	c.1604	p.S535C	0.993	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	15	0	0	18	7	28	-	-	-	C	71318220	G	C	71318220	3	2	151	1	0	0	0	0	1	0	0	0	6139	1174	41	2	712	2	FTSJD1	16	71318220	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	14250092	71318220	19036533	160	9019										
ZNF23	0	genome.wustl.edu	37	chr16	71482925	71482925	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acattcattacattcataagGtttctctccagtatggattc	5	9	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	71482925	71482925	G	C	SNP	ZNF23	ENST00000357254	human	ensembl	69_37n	-1	known	missense	c.1003	p.P335A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377	33	0	0	47	16	25.4	-	-	-	C	71482925	G	C	71482925	3	2	151	1	0	0	0	0	1	0	0	0	17879	1261	44	4	932	4	ZNF23	16	71482925	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	164705	71482925	18871828	161	9020										
PLCG2	0	genome.wustl.edu	37	chr16	81939110	81939110	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acatgtgggattccattgacCaggtgggccttggtcccttc	12	11	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	81939110	81939110	C	T	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	nonsense	c.1465	p.Q489*	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	68	0	0	57	10	14.93	-	-	-	T	81939110	C	T	81939110	4	4	151	1	0	0	0	0	0	1	0	0	12110	595	21	4	1519	4	PLCG2	16	81939110	Nonsense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	10456185	81939110	8415643	162	9021										
IRF8	0	genome.wustl.edu	37	chr16	85952175	85952175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	agggcctggagctggtgcgcTtcccgccggccgacgccatc	15	16	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	85952175	85952175	T	C	SNP	IRF8	ENST00000268638	human	ensembl	69_37n	1	known	missense	c.754	p.F252L	1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	50	0	0	45	12	21.05	-	-	-	C	85952175	T	C	85952175	3	2	151	1	0	0	0	0	1	0	0	0	7890	1609	56	5	776	5	IRF8	16	85952175	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	4013065	85952175	4402578	163	9022										
FANCA	0	genome.wustl.edu	37	chr16	89816214	89816214	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gcttgtcagagcctggagccGtctgcggaaaatctcaaaga	12	10	3	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	16	89816214	89816214	G	C	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.3163	p.R1055G	0.115	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	118	0	0	82	34	29.31	-	-	-	C	89816214	G	C	89816214	3	2	151	1	0	0	0	0	1	0	0	0	5708	1144	40	3	1252	3	FANCA	16	89816214	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	3864039	89816214	538539	164	9023										
TP53	0	genome.wustl.edu	37	chr17	7578217	7578218	+	Frame_Shift_Del	DEL	GT	GT	-													0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccaccacactatgtcgaaaaGtgtttctgtcatccaaatac							TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	7578217	7578218	GT	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.632_631	p.T211fs	0.994:0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0	7	31	77.5	-	-	-	-	7578218	GT	-	7578217	7	5	151	1	0	1	0	1	0	0	0	0	16477	1029	36	0	662	0	TP53	17	7578217	Frame_Shift_Del	DEL	GT	TCGA-A7-A5ZV-01A-11D-A28B-09		7578217	73616993	165	9024										
LLGL1	0	genome.wustl.edu	37	chr17	18138574	18138574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccccgccaagctgtgggcccGcattgtgagcgctggcgagc	15	15	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	18138574	18138574	G	A	SNP	LLGL1	ENST00000316843	human	ensembl	69_37n	1	known	missense	c.1232	p.R411H	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	68	0	0	7	36	83.72	-	-	-	A	18138574	G	A	18138574	3	1	151	1	0	0	0	0	1	0	0	0	8889	1087	38	1	1270	1	LLGL1	17	18138574	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	10560357	18138574	63056636	166	9025										
SLC46A1	0	genome.wustl.edu	37	chr17	26724205	26724205	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagtaaaagcagcctagacaGaacctgcagctctgtggaaa	10	10	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	26724205	26724205	G	C	SNP	SLC46A1	ENST00000583295	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	SLC46A1	HGNC	ENSG00000076351	22	0	0	6	5	45.45	-	-	-	C	26724205	G	C	26724205	1	2	151	0	1	0	0	0	0	0	0	0	14733	957	33	2		2	SLC46A1	17	26724205	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	8585631	26724205	54471005	167	9026										
SUPT6H	0	genome.wustl.edu	37	chr17	27000551	27000551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gaggaggccccagcctcaagCttctccccactattgctaag	9	15	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	27000551	27000551	C	G	SNP	SUPT6H	ENST00000584312	human	ensembl	69_37n	1	known	missense	c.132	p.S44R	1.000	NULL	NULL	-	no_errors	SUPT6H	HGNC	ENSG00000109111	20	0	0	18	10	35.71	-	-	-	G	27000551	C	G	27000551	3	3	151	1	0	0	0	0	1	0	0	0	15491	812	28	4		4	SUPT6H	17	27000551	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	276346	27000551	54194659	168	9027										
ZNF207	0	genome.wustl.edu	37	chr17	30696729	30696729	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccagggtgggcctcctcgacCtccgatgggaatgagacctc	13	14	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	30696729	30696729	C	G	SNP	ZNF207	ENST00000394670	human	ensembl	69_37n	1	known	missense	c.1436	p.P479R	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244	48	0	0	22	15	40.54	-	-	-	G	30696729	C	G	30696729	3	3	151	1	0	0	0	0	1	0	0	0	17861	681	24	4	1482	4	ZNF207	17	30696729	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	3696178	30696729	50498481	169	9028										
AXIN2	0	genome.wustl.edu	37	chr17	63533717	63533717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttgccaccgggcgggagcagGgagtggtactgcgaatggtg	19	8	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	63533717	63533717	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	silent	c.1437	p.S479	0.007	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	46	0	0	35	10	22.22	-	-	-	A	63533717	G	A	63533717	2	1	151	1	0	0	0	0	0	0	0	1	1241	1219	43	4		4	AXIN2	17	63533717	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	32836988	63533717	17661493	170	9029										
PRKCA	0	genome.wustl.edu	37	chr17	64731677	64731677	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cctgaagaaggatgtggtgaTtcaggatgatgacgtggagt	16	4	1	5			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	17	64731677	64731677	T	A	SNP	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	missense	c.1127	p.I376N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	114	0	0	64	52	44.83	-	-	-	A	64731677	T	A	64731677	3	1	151	1	0	0	0	0	1	0	0	0	12588	1493	52	5	1165	5	PRKCA	17	64731677	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	1197960	64731677	16463533	171	9030										
LAMA1	0	genome.wustl.edu	37	chr18	7034688	7034688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgcttaaagtgagtccgtttCcctaacatttaaaaacaaga	6	8	0	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	18	7034688	7034688	C	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.1841	p.G614V	1.000	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	22	0	0	39	8	17.02	-	-	-	A	7034688	C	A	7034688	3	1	151	1	0	0	0	0	1	0	0	0	8659	869	30	2	7586	2	LAMA1	18	7034688	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		7034688	71042560	172	9031										
ASXL3	0	genome.wustl.edu	37	chr18	31323268	31323268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tctacccctgaaacaaaaatGgaaggttcgactggtgtcat	9	9	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	18	31323268	31323268	G	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.3456	p.M1152I	0.899	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	24	0	0	6	5	45.45	-	-	-	T	31323268	G	T	31323268	3	4	151	1	0	0	0	0	1	0	0	0	1072	1348	47	4	3502	4	ASXL3	18	31323268	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	24288580	31323268	46753980	173	9032										
EIF3G	0	genome.wustl.edu	37	chr19	10230338	10230338	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtgtacacttaccgtcctccCcctcctcctccacctggtcg	6	20	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	10230338	10230338	C	G	SNP	EIF3G	ENST00000253108	human	ensembl	69_37n	-1	known	missense	c.59	p.G20A	1.000	pirsf_Transl_init_eIF-3_G	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_Transl_init_eIF-3_G,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811	137	0	0	84	32	27.59	-	-	-	G	10230338	C	G	10230338	3	3	151	1	0	0	0	0	1	0	0	0	5054	623	22	4	943	4	EIF3G	19	10230338	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		10230338	48898645	174	9033										
ZNF208	0	genome.wustl.edu	37	chr19	22156954	22156954	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtaagagtcgagaccttactAaaggctttgccacattcttc	8	10	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	22156954	22156954	A	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.882	p.F294	0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	33	0	0	37	16	30.19	-	-	-	G	22156954	A	G	22156954	2	3	151	1	0	0	0	0	0	0	0	1	17862	359	13	5		5	ZNF208	19	22156954	Silent	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	11926616	22156954	36972029	175	9034										
ZNF230	0	genome.wustl.edu	37	chr19	44515324	44515324	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gggctacattagtaagtcagGtcttaacttgcaccagaggg	12	8	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	44515324	44515324	G	C	SNP	ZNF230	ENST00000429154	human	ensembl	69_37n	1	known	missense	c.1133	p.G378A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882	41	0	0	19	6	24	-	-	-	C	44515324	G	C	44515324	3	2	151	1	0	0	0	0	1	0	0	0	17880	1261	44	4	1147	4	ZNF230	19	44515324	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	22358370	44515324	14613659	176	9035										
BLOC1S3	0	genome.wustl.edu	37	chr19	45683173	45683173	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cgcgggcctagccatgattcTacttcccaacctgactgcaa	8	15	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	45683173	45683173	T	A	SNP	BLOC1S3	ENST00000588362	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	BLOC1S3	HGNC	ENSG00000189114	35	0	0	7	5	41.67	-	-	-	A	45683173	T	A	45683173	1	1	151	0	1	0	0	0	0	0	0	0	1455	1537	53	5		5	BLOC1S3	19	45683173	RNA	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	1167849	45683173	13445810	177	9036										
LILRB1	0	genome.wustl.edu	37	chr19	55144502	55144502	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gagtctccctctcggtgcagCcgggccccacggtggcctca	13	17	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	55144502	55144502	C	A	SNP	LILRB1	ENST00000324602	human	ensembl	69_37n	1	known	missense	c.994	p.P332T	0.005	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB1	HGNC	ENSG00000104972	77	0	0	45	31	40.79	-	-	-	A	55144502	C	A	55144502	3	1	151	1	0	0	0	0	1	0	0	0	8845	739	26	4	1016	4	LILRB1	19	55144502	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	9461329	55144502	3984481	178	9037										
KIR2DL3	0	genome.wustl.edu	37	chr19	55250970	55250970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cagggttcttcttgctgcagGgggcctggccacatgagggt	16	10	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	55250970	55250970	G	T	SNP	KIR2DL3	ENST00000434419	human	ensembl	69_37n	1	known	missense	c.52	p.G18W	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772	123	0	0	96	19	16.52	-	-	-	T	55250970	G	T	55250970	3	4	151	1	0	0	0	0	1	0	0	0	8370	1232	43	4	58	4	KIR2DL3	19	55250970	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	106468	55250970	3878013	179	9038										
TMEM190	0	genome.wustl.edu	37	chr19	55889519	55889519	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tgtggagggaggcaccgaggGggaagggacggaggagggtg	25	4	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	55889519	55889519	G	C	SNP	TMEM190	ENST00000291934	human	ensembl	69_37n	1	known	missense	c.482	p.G161A	0.001	NULL	superfamily_P_trefoil	-	no_errors	TMEM190	HGNC	ENSG00000160472	84	0	0	36	47	56.63	-	-	-	C	55889519	G	C	55889519	3	2	151	1	0	0	0	0	1	0	0	0	16209	1232	43	4	500	4	TMEM190	19	55889519	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	638549	55889519	3239464	180	9039										
ZNF497	0	genome.wustl.edu	37	chr19	58868858	58868858	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tggccgtcccctgcctccctCggaacctccgtggagttttc	10	17	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	19	58868858	58868858	C	T	SNP	ZNF497	ENST00000311044	human	ensembl	69_37n	-1	known	silent	c.144	p.P48	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586	23	0	0	12	5	29.41	-	-	-	T	58868858	C	T	58868858	2	4	151	1	0	0	0	0	0	0	0	1	18042	871	31	1		1	ZNF497	19	58868858	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	2979339	58868858	260125	181	9040										
TMC2	0	genome.wustl.edu	37	chr20	2517931	2517931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acagcacgaggcggagtgaaAgggcgggtgaagagcggctc	19	8	0	3			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	20	2517931	2517931	A	C	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.51	p.K17N	0.695	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	32	0	0	6	13	68.42	-	-	-	C	2517931	A	C	2517931	3	2	151	1	0	0	0	0	1	0	0	0	16080	69	3	5	57	5	TMC2	20	2517931	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09		2517931	60507589	182	9041										
ZFP64	0	genome.wustl.edu	37	chr20	50803573	50803573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	atgccgcagatatggatgtcGggagtcagctccaccagcac	12	12	1	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	20	50803573	50803573	G	T	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	silent	c.84	p.P28	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	42	0	0	60	24	26.09	-	-	-	T	50803573	G	T	50803573	2	4	151	1	0	0	0	0	0	0	0	1	17748	1103	39	3		3	ZFP64	20	50803573	Silent	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	48285642	50803573	12221947	183	9042										
KRTAP15-1	0	genome.wustl.edu	37	chr21	31812765	31812765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gccatctattctccaaatacCtgccaactgggctcctctct	5	16	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	21	31812765	31812765	C	T	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	1	known	silent	c.120	p.T40	0.002	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	32	0	0	19	9	32.14	-	-	-	T	31812765	C	T	31812765	2	4	151	1	0	0	0	0	0	0	0	1	8579	668	24	4		4	KRTAP15-1	21	31812765	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		31812765	16317130	184	9043										
RCAN1	0	genome.wustl.edu	37	chr21	35889098	35889098	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	aaaatgacaaacattgttacGgtattgtaaggccaaaatat	7	5	0	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	21	35889098	35889098	G	C	SNP	RCAN1	ENST00000489903	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.642	-	-	-	no_errors	RCAN1	HGNC	ENSG00000159200	18	0	0	1	7	87.5	-	-	-	C	35889098	G	C	35889098	1	2	151	0	1	0	0	0	0	0	0	0	13251	1131	39	3		3	RCAN1	21	35889098	RNA	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	4076333	35889098	12240797	185	9044										
MYO18B	0	genome.wustl.edu	37	chr22	26224779	26224779	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	catctctccatggcctccatCatggtggtggactctccagg	10	14	3	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	22	26224779	26224779	C	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	silent	c.2823	p.I941	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	112	0	0	50	13	20.63	-	-	-	A	26224779	C	A	26224779	2	1	151	1	0	0	0	0	0	0	0	1	10138	816	29	2		2	MYO18B	22	26224779	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09		26224779	25079787	186	9045										
RNF185	0	genome.wustl.edu	37	chr22	31600503	31600503	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gggacaccccagtatgtggaCgagcagttcctgtcacgcct	12	13	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	22	31600503	31600503	C	G	SNP	RNF185	ENST00000326132	human	ensembl	69_37n	1	known	missense	c.510	p.D170E	0.899	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF185	HGNC	ENSG00000138942	81	0	0	47	29	38.16	-	-	-	G	31600503	C	G	31600503	3	3	151	1	0	0	0	0	1	0	0	0	13554	535	19	3	532	3	RNF185	22	31600503	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	5375724	31600503	19704063	187	9046										
XPNPEP3	0	genome.wustl.edu	37	chr22	41318426	41318426	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cttccctgggacaagcttggAgaacatctacagcatgatgc	10	11	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	22	41318426	41318426	A	G	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	missense	c.1145	p.E382G	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	65	0	0	43	18	29.51	-	-	-	G	41318426	A	G	41318426	3	3	151	1	0	0	0	0	1	0	0	0	17541	304	11	5	1175	5	XPNPEP3	22	41318426	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	9717923	41318426	9986140	188	9047										
SHROOM2	0	genome.wustl.edu	37	chrX	9864049	9864049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ccacgtccttcaagcgccgcGacttggaccccaacccagga	9	18	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	9864049	9864049	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2101	p.D701N	1.000	pfam_ASD1	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	94	0	0	40	23	36.51	-	-	-	A	9864049	G	A	9864049	3	1	151	1	0	0	0	0	1	0	0	0	14383	1058	37	1	2115	1	SHROOM2	23	9864049	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09		9864049	145406511	189	9048										
POLA1	0	genome.wustl.edu	37	chrX	24830922	24830922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	attatgtcaccaaacaggagCtcaaaggattagatatagtt	8	6	2	1			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	24830922	24830922	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.3238	p.L1080F	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	47	0	0	41	23	35.94	-	-	-	T	24830922	C	T	24830922	3	4	151	1	0	0	0	0	1	0	0	0	12261	797	28	4	3334	4	POLA1	23	24830922	Missense_Mutation	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	14966873	24830922	130439638	190	9049										
MAGEB10	0	genome.wustl.edu	37	chrX	27839450	27839450	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cgaggtcagaagagtaaactCcgtgccagggaaaaacgccg	13	10	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	27839450	27839450	C	G	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	silent	c.27	p.L9	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	36	0	0	26	20	43.48	-	-	-	G	27839450	C	G	27839450	2	3	151	1	0	0	0	0	0	0	0	1	9244	842	30	2		2	MAGEB10	23	27839450	Silent	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	3008528	27839450	127431110	191	9050										
ZC3H12B	0	genome.wustl.edu	37	chrX	64717089	64717089	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tctagataaaggccataaagAtattactgtatttgtgcctg	8	6	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	64717089	64717089	A	G	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.686	p.D229G	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	49	0	0	60	25	29.41	-	-	-	G	64717089	A	G	64717089	3	3	151	1	0	0	0	0	1	0	0	0	17658	333	12	5	692	5	ZC3H12B	23	64717089	Missense_Mutation	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	36877639	64717089	90553471	192	9051										
KIF4A	0	genome.wustl.edu	37	chrX	69639953	69639953	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	gtggagcaggtgctgtcaaaGaagactcccccagctccctc	11	14	1	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	69639953	69639953	G	C	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.3537	p.K1179N	0.001	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	78	0	0	70	39	35.78	-	-	-	C	69639953	G	C	69639953	3	2	151	1	0	0	0	0	1	0	0	0	8355	933	33	2	3655	2	KIF4A	23	69639953	Missense_Mutation	SNP	G	TCGA-A7-A5ZV-01A-11D-A28B-09	4922864	69639953	85630607	193	9052										
P2RY10	0	genome.wustl.edu	37	chrX	78216940	78216940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	tccaattctttattactttaTggcttcagagtttcgtgacc	6	9	2	2			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	78216940	78216940	T	C	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.923	p.M308T	0.988	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	45	0	0	33	19	36.54	-	-	-	C	78216940	T	C	78216940	3	2	151	1	0	0	0	0	1	0	0	0	11420	1464	51	5	925	5	P2RY10	23	78216940	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	8576987	78216940	77053620	194	9053										
POU3F4	0	genome.wustl.edu	37	chrX	82763378	82763378	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	acagcattctcagttccaccTccctagtccatgcggactct	6	16	2	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	82763378	82763378	T	A	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	missense	c.46	p.S16T	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	102	0	0	41	16	28.07	-	-	-	A	82763378	T	A	82763378	3	1	151	1	0	0	0	0	1	0	0	0	12350	1551	54	5	48	5	POU3F4	23	82763378	Missense_Mutation	SNP	T	TCGA-A7-A5ZV-01A-11D-A28B-09	4546438	82763378	72507182	195	9054										
MOSPD1	0	genome.wustl.edu	37	chrX	134023050	134023050	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	ttcaaattaaattataatttAaaatatatattatacatttg	1	2	1	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	134023050	134023050	A	T	SNP	MOSPD1	ENST00000480721	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928	29	0	0	28	8	22.22	-	-	-	T	134023050	A	T	134023050	1	4	151	0	1	0	0	0	0	0	0	0	9787	377	13	5		5	MOSPD1	23	134023050	RNA	SNP	A	TCGA-A7-A5ZV-01A-11D-A28B-09	51259672	134023050	21247510	196	9055										
FAM127B	0	genome.wustl.edu	37	chrX	134186146	134186146	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.086734693877551	17	0.417627304316835	1.29792933130699	1.71618788819876	0.897098214285714	0.215152332169602	0.803125881152178	0	cccgaccgtccatcgtgccgCgcgcgctccgcggagtttcg	13	18	0	0			TCGA-A7-A5ZV-01A-11D-A28B-09	TCGA-A7-A5ZV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8665fda-509b-496c-a9bf-eee1c60dbb78	f1d70ca5-8f78-49a4-b3b3-4112be4c14fa	X	134186146	134186146	C	T	SNP	FAM127B	ENST00000520964	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127B	HGNC	ENSG00000203950	24	0	0	33	13	28.26	-	-	-	T	134186146	C	T	134186146	1	4	151	0	1	0	0	0	0	0	0	0	5472	783	27	1		1	FAM127B	23	134186146	RNA	SNP	C	TCGA-A7-A5ZV-01A-11D-A28B-09	163096	134186146	21084414	197	9056										
HDAC1	0	genome.wustl.edu	37	chr1	32790085	32790085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	cttatttctttcaagtcaacGttggtgaggactgtccagta	9	8	3	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	32790085	32790085	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	missense	c.286	p.V96I	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	148	0	0	119	19	13.77	-	-	-	A	32790085	G	A	32790085	3	1	152	1	0	0	0	0	1	0	0	0	7055	1145	40	1	300	1	HDAC1	1	32790085	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		32790085	216460536	1	9057										
DHX9	0	genome.wustl.edu	37	chr1	182836152	182836152	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	gaatcagtcatgtaattgtaGatgaaatacatgaaagagat	9	3	2	4			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	1	182836152	182836152	G	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.1531	p.D511Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	16	0	0	13	5	27.78	-	-	-	T	182836152	G	T	182836152	3	4	152	1	0	0	0	0	1	0	0	0	4552	942	33	2	1581	2	DHX9	1	182836152	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09	150046067	182836152	66414469	2	9058										
HDLBP	0	genome.wustl.edu	37	chr2	242170255	242170255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	acgcggtggtccagcgggacGtcctcagaaaccatctgctc	12	14	2	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	2	242170255	242170255	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	silent	c.3393	p.D1131	0.787	smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	46	0	0	56	13	18.84	-	-	-	A	242170255	G	A	242170255	2	1	152	1	0	0	0	0	0	0	0	1	7076	1136	40	1		1	HDLBP	2	242170255	Silent	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		242170255	1029118	3	9059										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	22	0	0	15	6	28.57	-	-	-	G	178952085	A	G	178952085	3	3	152	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A7-A5ZW-01A-12D-A29N-09		178952085	19070345	4	9060										
KDR	0	genome.wustl.edu	37	chr4	55955041	55955042	+	Frame_Shift_Ins	INS	-	-	G													0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	ggaggtgacaaacctgctgaINSgcattagcttgcaagagatt							TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	55955041	55955042	-	G	INS	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3504_3503	p.Q1169fs	0.721:0.984	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	64	0	0	51	6	10.53	-	-	-	G	55955042	-	G	55955041	7	5	152	1	0	1	1	0	0	0	0	0	8192	291	11	0	586	0	KDR	4	55955041	Frame_Shift_Ins	INS	-	TCGA-A7-A5ZW-01A-12D-A29N-09		55955041	135199235	5	9061										
BBS12	0	genome.wustl.edu	37	chr4	123664254	123664254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	gggcaaatcacgtgttacagGtgttaatccagttcaaggtg	12	7	2	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	123664254	123664254	G	A	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	1	known	missense	c.1207	p.V403M	0.001	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	35	0	0	30	7	18.92	-	-	-	A	123664254	G	A	123664254	3	1	152	1	0	0	0	0	1	0	0	0	1341	1261	44	4	1209	4	BBS12	4	123664254	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09	67709213	123664254	67490022	6	9062										
FAT1	0	genome.wustl.edu	37	chr4	187535469	187535469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	atcaattttccaggaaggacGtcttcaggaatagtgtctga	10	7	4	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	4	187535469	187535469	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	silent	c.9105	p.D3035	0.950	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	38	0	0	33	7	17.5	-	-	-	A	187535469	G	A	187535469	2	1	152	1	0	0	0	0	0	0	0	1	5735	1136	40	1		1	FAT1	4	187535469	Silent	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09	63871215	187535469	3618807	7	9063										
MAP3K1	0	genome.wustl.edu	37	chr5	56179458	56179458	+	Frame_Shift_Del	DEL	T	T	-													0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	cttggagcattttcttcttgTtatcaggctcaagatgtggg							TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	5	56179458	56179458	T	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3771	p.Y1258fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	28	0	0	42	9	17.31	-	-	-	-	56179458	T	-	56179458	7	5	152	1	0	1	0	1	0	0	0	0	9314	1731	60	0	3829	0	MAP3K1	5	56179458	Frame_Shift_Del	DEL	T	TCGA-A7-A5ZW-01A-12D-A29N-09		56179458	124735802	8	9064										
PCDHA9	0	genome.wustl.edu	37	chr5	140229433	140229433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	gtggccgacgtgaacgacaaCgcaccagcgttcgcgcagtc	13	14	0	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	5	140229433	140229433	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	silent	c.1353	p.N451	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	115	0	0	50	40	44.44	-	-	-	T	140229433	C	T	140229433	2	4	152	1	0	0	0	0	0	0	0	1	11604	535	19	1		1	PCDHA9	5	140229433	Silent	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09	84049975	140229433	40685827	9	9065										
AKAP9	0	genome.wustl.edu	37	chr7	91718705	91718705	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	ttcctttgttacagggtgttGaatatcaagcagctatggaa	10	6	1	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	7	91718705	91718705	G	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.9232	p.E3078Q	0.994	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	78	0	0	74	14	15.91	-	-	-	C	91718705	G	C	91718705	3	2	152	1	0	0	0	0	1	0	0	0	459	1291	45	2	9370	2	AKAP9	7	91718705	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		91718705	67419958	10	9066										
MLL3	0	genome.wustl.edu	37	chr7	152007146	152007146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	ccactccacacaacggtgatGagcccaacaagtgcctaaaa	7	14	0	2			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	7	152007146	152007146	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.754	p.H252Y	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	43	0	0	33	12	26.67	-	-	-	A	152007146	G	A	152007146	3	1	152	1	0	0	0	0	1	0	0	0	9693	1290	45	2	14197	2	MLL3	7	152007146	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09	60288441	152007146	7131517	11	9067										
RACGAP1	0	genome.wustl.edu	37	chr12	50410433	50410433	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	cggacttcatttccttcactGagaatctccacccggcgcac	7	16	3	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	50410433	50410433	G	T	SNP	RACGAP1	ENST00000548247	human	ensembl	69_37n	-1	putative	nonsense	c.47	p.S16*	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	RACGAP1	HGNC	ENSG00000161800	30	0	0	32	4	11.11	-	-	-	T	50410433	G	T	50410433	4	4	152	1	0	0	0	0	0	1	0	0	13060	1277	45	2	1896	2	RACGAP1	12	50410433	Nonsense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		50410433	83441462	12	9068										
SOAT2	0	genome.wustl.edu	37	chr12	53498996	53498996	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	acccatcacaagacaaacctCtgcccccacctcccccaggt	4	21	2	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	53498996	53498996	C	G	SNP	SOAT2	ENST00000301466	human	ensembl	69_37n	1	known	missense	c.244	p.L82V	0.001	NULL	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780	26	0	0	19	6	24	-	-	-	G	53498996	C	G	53498996	3	3	152	1	0	0	0	0	1	0	0	0	15000	912	32	2	254	2	SOAT2	12	53498996	Missense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09	3088563	53498996	80352899	13	9069										
DTX1	0	genome.wustl.edu	37	chr12	113534596	113534596	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	gtccaacaccacgggcgagtCggacaccgtggtgtggaacg	15	12	0	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	12	113534596	113534596	C	A	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	nonsense	c.1715	p.S572*	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	67	0	0	49	23	31.94	-	-	-	A	113534596	C	A	113534596	4	1	152	1	0	0	0	0	0	1	0	0	4828	893	31	3	1749	3	DTX1	12	113534596	Nonsense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09	60035600	113534596	20317299	14	9070										
ALOX5AP	0	genome.wustl.edu	37	chr13	31338226	31338226	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	tctccaccaccatctcccctCtacttctcattccctaactc	0	21	4	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	13	31338226	31338226	C	G	SNP	ALOX5AP	ENST00000380490	human	ensembl	69_37n	1	known	missense	c.469	p.L157V	0.959	NULL	pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP	-	no_errors	ALOX5AP	HGNC	ENSG00000132965	67	0	0	72	14	16.28	-	-	-	G	31338226	C	G	31338226	3	3	152	1	0	0	0	0	1	0	0	0	541	912	32	2	487	2	ALOX5AP	13	31338226	Missense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09		31338226	83831652	15	9071										
AHNAK2	0	genome.wustl.edu	37	chr14	105417180	105417180	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	atgctcaggtcagtggccttGaggtccccctgcatggaggg	15	11	2	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	14	105417180	105417180	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.4608	p.L1536	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	117	0	0	69	23	25	-	-	-	C	105417180	G	C	105417180	2	2	152	1	0	0	0	0	0	0	0	1	415	1277	45	2		2	AHNAK2	14	105417180	Silent	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		105417180	1932360	16	9072										
MEGF11	0	genome.wustl.edu	37	chr15	66273187	66273187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	cccattctgacaggggcagcGcagctcacagtgagctccat	11	14	2	2			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	15	66273187	66273187	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.691	p.R231C	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	53	0	0	24	6	20	-	-	-	A	66273187	G	A	66273187	3	1	152	1	0	0	0	0	1	0	0	0	9532	1087	38	1	2511	1	MEGF11	15	66273187	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		66273187	36258205	17	9073										
ANKRD11	0	genome.wustl.edu	37	chr16	89351908	89351908	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	ctcgtcgtcctcatcaaactCatactcgtccttgacggggg	9	14	3	1			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	16	89351908	89351908	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.1042	p.E348K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	111	0	0	67	24	26.37	-	-	-	T	89351908	C	T	89351908	3	4	152	1	0	0	0	0	1	0	0	0	639	835	29	2	6969	2	ANKRD11	16	89351908	Missense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09		89351908	1002845	18	9074										
EPB41L3	0	genome.wustl.edu	37	chr18	5433996	5433996	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	aatgtaatcgctcccacattCatctgggtcatagtctccga	7	12	4	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	18	5433996	5433996	C	T	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.730	p.E244K	1.000	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	40	0	0	37	15	28.85	-	-	-	T	5433996	C	T	5433996	3	4	152	1	0	0	0	0	1	0	0	0	5191	835	29	2	2597	2	EPB41L3	18	5433996	Missense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09		5433996	72643252	19	9075										
KCNA7	0	genome.wustl.edu	37	chr19	49573895	49573895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	catggcctgctggcccacccCtcgctgccgggccagctcgg	13	19	0	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	19	49573895	49573895	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	69_37n	-1	known	missense	c.796	p.G266R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	34	0	0	23	13	36.11	-	-	-	T	49573895	C	T	49573895	3	4	152	1	0	0	0	0	1	0	0	0	8062	681	24	4	578	4	KCNA7	19	49573895	Missense_Mutation	SNP	C	TCGA-A7-A5ZW-01A-12D-A29N-09		49573895	9555088	20	9076										
MICAL3	0	genome.wustl.edu	37	chr22	18371885	18371885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	7	0.0150144407008004	3.39766081871345	7.28070175438596	1.98564593301435	1	1	5	ttatcaggctcccccacggaGgccatttctttgcctgtcat	8	14	3	0			TCGA-A7-A5ZW-01A-12D-A29N-09	TCGA-A7-A5ZW-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	625e623d-6b89-4f8d-8b99-21e8d3178b73	3e7894de-ba96-4306-844b-f675ef3f4566	22	18371885	18371885	G	A	SNP	MICAL3	ENST00000461307	human	ensembl	69_37n	-1	putative	missense	c.362	p.P121L	0.996	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MICAL3	HGNC	ENSG00000243156	65	0	0	49	7	12.5	-	-	-	A	18371885	G	A	18371885	3	1	152	1	0	0	0	0	1	0	0	0	9642	987	35	4	5019	4	MICAL3	22	18371885	Missense_Mutation	SNP	G	TCGA-A7-A5ZW-01A-12D-A29N-09		18371885	32932681	21	9077										
CYP4A22	0	genome.wustl.edu	37	chr1	47611572	47611572	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ctctccatttatggccttcaCcacaacccaaaagtgtggcc	6	15	2	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	1	47611572	47611572	C	A	SNP	CYP4A22	ENST00000371891	human	ensembl	69_37n	1	known	missense	c.1257	p.H419Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365	128	0	0	88	17	16.19	-	-	-	A	47611572	C	A	47611572	3	1	153	1	0	0	0	0	1	0	0	0	4215	506	18	4	1295	4	CYP4A22	1	47611572	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09		47611572	201639049	1	9078										
BOLA1	0	genome.wustl.edu	37	chr1	149871946	149871946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ccatccaggcacggacccccGcccagtggagagagaactct	11	16	1	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	1	149871946	149871946	G	A	SNP	BOLA1	ENST00000369150	human	ensembl	69_37n	1	known	missense	c.334	p.A112T	0.522	pfam_BolA,superfamily_BolA	pfam_BolA,superfamily_BolA	-	no_errors	BOLA1	HGNC	ENSG00000178096	64	0	0	53	7	11.67	-	-	-	A	149871946	G	A	149871946	3	1	153	1	0	0	0	0	1	0	0	0	1490	1087	38	1	336	1	BOLA1	1	149871946	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09	102260374	149871946	99378675	2	9079										
RAD51AP2	0	genome.wustl.edu	37	chr2	17697546	17697546	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	attcacaacttgttgaggacAactcatattctgacaagtaa	6	8	3	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	2	17697546	17697546	A	G	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	missense	c.2137	p.C713R	0.012	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	47	0	0	40	6	13.04	-	-	-	G	17697546	A	G	17697546	3	3	153	1	0	0	0	0	1	0	0	0	13070	130	5	5	1354	5	RAD51AP2	2	17697546	Missense_Mutation	SNP	A	TCGA-A7-A5ZX-01A-12D-A29N-09		17697546	225501827	3	9080										
SMARCC1	0	genome.wustl.edu	37	chr3	47702933	47702933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gtggtacctcctcccggaccCgagaaaactcctctggttca	9	15	2	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	47702933	47702933	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2171	p.R724Q	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	30	0	0	22	4	15.38	-	-	-	T	47702933	C	T	47702933	3	4	153	1	0	0	0	0	1	0	0	0	14864	652	23	1	1178	1	SMARCC1	3	47702933	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09		47702933	150319497	4	9081										
PCCB	0	genome.wustl.edu	37	chr3	136048838	136048838	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	agcaagaaggtacaacgtccTtggagaaaacatgcaaatat	9	7	0	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	136048838	136048838	T	G	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	1	known	silent	c.1590	p.P530	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	67	0	0	39	9	18.75	-	-	-	G	136048838	T	G	136048838	2	3	153	1	0	0	0	0	0	0	0	1	11578	1596	56	5		5	PCCB	3	136048838	Silent	SNP	T	TCGA-A7-A5ZX-01A-12D-A29N-09	88345905	136048838	61973592	5	9082										
IQCG	0	genome.wustl.edu	37	chr3	197670789	197670789	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ctctagagtttccgggatttCtgggatgatttctatgtctg	11	7	4	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	197670789	197670789	C	T	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	missense	c.142	p.E48K	0.171	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	142	0	0	85	10	10.53	-	-	-	T	197670789	C	T	197670789	3	4	153	1	0	0	0	0	1	0	0	0	7864	922	32	2	1225	2	IQCG	3	197670789	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	61621951	197670789	351641	6	9083										
EYS	0	genome.wustl.edu	37	chr6	65655792	65655792	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	tccttcccaatcagataggcAcacacactggtagctctaag	7	13	2	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	6	65655792	65655792	A	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.2275	p.C759R	0.874	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	45	0	0	31	5	13.89	-	-	-	G	65655792	A	G	65655792	3	3	153	1	0	0	0	0	1	0	0	0	5369	159	6	5	7120	5	EYS	6	65655792	Missense_Mutation	SNP	A	TCGA-A7-A5ZX-01A-12D-A29N-09		65655792	105459275	7	9084										
HOXA11	0	genome.wustl.edu	37	chr7	27224434	27224434	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	tggtggtagacgttggccgaGctcttggccagcacgtcgcc	15	12	1	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	7	27224434	27224434	G	T	SNP	HOXA11	ENST00000006015	human	ensembl	69_37n	-1	known	missense	c.330	p.S110R	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXA11	HGNC	ENSG00000005073	63	0	0	45	12	21.05	-	-	-	T	27224434	G	T	27224434	3	4	153	1	0	0	0	0	1	0	0	0	7341	962	34	4	619	4	HOXA11	7	27224434	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09		27224434	131914229	8	9085										
BRF2	0	genome.wustl.edu	37	chr8	37702522	37702522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	catttgccaatttacaaaatCgggcaagggaacatgaaagc	9	8	0	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	8	37702522	37702522	C	T	SNP	BRF2	ENST00000220659	human	ensembl	69_37n	-1	known	missense	c.746	p.R249Q	0.514	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221	47	0	0	35	7	16.67	-	-	-	T	37702522	C	T	37702522	3	4	153	1	0	0	0	0	1	0	0	0	1519	884	31	1	517	1	BRF2	8	37702522	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09		37702522	108661500	9	9086										
MMP16	0	genome.wustl.edu	37	chr8	89053874	89053874	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gatgacaatgtctacatcatCtggtgggctgtgtccttctt	10	9	4	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	8	89053874	89053874	C	T	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.1639	p.D547N	1.000	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	94	0	0	58	7	10.77	-	-	-	T	89053874	C	T	89053874	3	4	153	1	0	0	0	0	1	0	0	0	9726	913	32	2	188	2	MMP16	8	89053874	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	51351352	89053874	57310148	10	9087										
PSMD13	0	genome.wustl.edu	37	chr11	252640	252640	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gtgtctcctttgactcacctGagagaggcgtttgcagccaa	11	11	2	3			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	252640	252640	G	A	SNP	PSMD13	ENST00000532025	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMD13	HGNC	ENSG00000185627	60	0	0	38	5	11.63	-	-	-	A	252640	G	A	252640	1	1	153	0	1	0	0	0	0	0	0	0	12776	1305	45	2		2	PSMD13	11	252640	RNA	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09		252640	134753876	11	9088										
FIBIN	0	genome.wustl.edu	37	chr11	27016341	27016341	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	agttcaccgtgctgggccgcCaggtggaggatgctgggcgc	18	11	1	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	27016341	27016341	C	A	SNP	FIBIN	ENST00000318627	human	ensembl	69_37n	1	known	missense	c.268	p.Q90K	1.000	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971	49	0	0	36	8	18.18	-	-	-	A	27016341	C	A	27016341	3	1	153	1	0	0	0	0	1	0	0	0	5931	595	21	4	270	4	FIBIN	11	27016341	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	26763701	27016341	107990175	12	9089										
C2CD3	0	genome.wustl.edu	37	chr11	73849826	73849826	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	atgcatgagtcactgtgactCttggcaactgttctaatttg	9	8	3	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	73849826	73849826	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	silent	c.894	p.K298	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	42	0	0	27	8	22.86	-	-	-	T	73849826	C	T	73849826	2	4	153	1	0	0	0	0	0	0	0	1	2174	912	32	2		2	C2CD3	11	73849826	Silent	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	46833485	73849826	61156690	13	9090										
MCAM	0	genome.wustl.edu	37	chr11	119181178	119181178	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	acgagacgggggtagcgtgcTgggaggagggagggaggtga	24	4	0	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	119181178	119181178	T	A	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	splice_site	c.1794-2	e15-2	1.000	-	-	-	no_errors	MCAM	HGNC	ENSG00000076706	40	0	0	27	5	15.62	-	-	-	A	119181178	T	A	119181178	5	1	153	1	0	0	0	0	0	0	1	0	9439	1594	55	5	156	5	MCAM	11	119181178	Splice_Site	SNP	T	TCGA-A7-A5ZX-01A-12D-A29N-09	45331352	119181178	15825338	14	9091										
CHD4	0	genome.wustl.edu	37	chr12	6702280	6702280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	agactgattgttcttcagccGatgggcttcatccacgatga	10	10	3	3			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	6702280	6702280	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2629	p.R877W	0.999	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	37	0	0	18	4	18.18	-	-	-	A	6702280	G	A	6702280	3	1	153	1	0	0	0	0	1	0	0	0	3356	1057	37	1	3205	1	CHD4	12	6702280	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09		6702280	127149615	15	9092										
MAP3K12	0	genome.wustl.edu	37	chr12	53877488	53877488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	cagcttcctttcatagtgctCcctgatgtccagggcgtgtc	10	13	1	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	53877488	53877488	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427K	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	21	0	0	12	3	20	-	-	-	T	53877488	C	T	53877488	3	4	153	1	0	0	0	0	1	0	0	0	9317	864	30	2	1324	2	MAP3K12	12	53877488	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	47175208	53877488	79974407	16	9093										
TBX3	0	genome.wustl.edu	37	chr12	115114233	115114236	+	Frame_Shift_Del	DEL	TCTT	TCTT	-													0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gtcccattctcctttttgtgTctttcatcaaacaccctcat							TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	TCTT	TCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	115114233	115114236	TCTT	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.984_981	p.E327fs	0.924:0.999:1.000:1.000	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	73	0	0	45	6	11.76	-	-	-	-	115114236	TCTT	-	115114233	7	5	153	1	0	1	0	1	0	0	0	0	15754	1664	58	0	1259	0	TBX3	12	115114233	Frame_Shift_Del	DEL	TCTT	TCGA-A7-A5ZX-01A-12D-A29N-09	61236745	115114233	18737662	17	9094										
SLITRK6	0	genome.wustl.edu	37	chr13	86369296	86369296	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	attaaaggttcctggcagtaTttccttaatggcattgtatt	8	6	0	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	13	86369296	86369296	T	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.1348	p.I450L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	101	0	0	59	16	21.33	-	-	-	A	86369296	T	A	86369296	3	1	153	1	0	0	0	0	1	0	0	0	14836	1493	52	5	1181	5	SLITRK6	13	86369296	Missense_Mutation	SNP	T	TCGA-A7-A5ZX-01A-12D-A29N-09		86369296	28800582	18	9095										
PCCA	0	genome.wustl.edu	37	chr13	100982917	100982917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ctccgatgtgtatcctgatgGcttcaaaggtttgtatgcat	10	8	1	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	13	100982917	100982917	G	A	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	1	known	missense	c.1532	p.G511D	1.000	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	41	0	0	33	7	17.5	-	-	-	A	100982917	G	A	100982917	3	1	153	1	0	0	0	0	1	0	0	0	11577	1203	42	4	1598	4	PCCA	13	100982917	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09	14613621	100982917	14186961	19	9096										
OR11H12	0	genome.wustl.edu	37	chr14	19377927	19377927	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	aaaacatctcctttgctggaTgttttctccagttttatttc	5	9	2	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	14	19377927	19377927	T	C	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	missense	c.334	p.C112R	0.110	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	78	0	0	56	10	15.15	-	-	-	C	19377927	T	C	19377927	3	2	153	1	0	0	0	0	1	0	0	0	11000	1464	51	5	336	5	OR11H12	14	19377927	Missense_Mutation	SNP	T	TCGA-A7-A5ZX-01A-12D-A29N-09		19377927	87971613	20	9097										
TMEM179	0	genome.wustl.edu	37	chr14	105059982	105059982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ccagccaggccagccatgagGcccagaggccaaactgcaca	11	16	0	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	14	105059982	105059982	G	A	SNP	TMEM179	ENST00000556573	human	ensembl	69_37n	-1	known	missense	c.536	p.A179V	1.000	NULL	NULL	-	no_errors	TMEM179	HGNC	ENSG00000258986	128	0	0	87	14	13.86	-	-	-	A	105059982	G	A	105059982	3	1	153	1	0	0	0	0	1	0	0	0	16191	1218	42	4		4	TMEM179	14	105059982	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09	85682055	105059982	2289558	21	9098										
MGA	0	genome.wustl.edu	37	chr15	42058213	42058213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gtttttcagaaaatgacgacTtatttatgatgccacgaatt	7	6	1	3			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	15	42058213	42058213	T	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.7933	p.L2645V	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	37	0	0	17	9	34.62	-	-	-	G	42058213	T	G	42058213	3	3	153	1	0	0	0	0	1	0	0	0	9611	1606	56	5	8023	5	MGA	15	42058213	Missense_Mutation	SNP	T	TCGA-A7-A5ZX-01A-12D-A29N-09		42058213	60473179	22	9099										
CDH1	0	genome.wustl.edu	37	chr16	68862103	68862103	+	Frame_Shift_Del	DEL	C	C	-													0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ttctgctgctcttgctgtttCttcggaggagagcggtggtc							TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	16	68862103	68862103	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2191	p.L731fs	0.037	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	186	0	0	82	27	24.11	-	-	-	-	68862103	C	-	68862103	7	5	153	1	0	1	0	1	0	0	0	0	3124	913	32	0	2245	0	CDH1	16	68862103	Frame_Shift_Del	DEL	C	TCGA-A7-A5ZX-01A-12D-A29N-09		68862103	21492650	23	9100										
HYDIN	0	genome.wustl.edu	37	chr16	70993639	70993639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	aaatgtcaatgcccaggtggCgagcgattgctttgctcact	11	10	2	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	16	70993639	70993639	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6050	p.R2017H	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	18	0	0	7	4	36.36	-	-	-	T	70993639	C	T	70993639	3	4	153	1	0	0	0	0	1	0	0	0	7521	768	27	1	9504	1	HYDIN	16	70993639	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09	2131536	70993639	19361114	24	9101										
POLDIP2	0	genome.wustl.edu	37	chr17	26684529	26684529	+	RNA	DEL	G	G	-													0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	agcccgacccgcggccgggcGgttccgccccagtcccacac							TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	17	26684529	26684529	G	-	DEL	POLDIP2	ENST00000003607	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	8	0	0	3	3	50	-	-	-	-	26684529	G	-	26684529	6	5	153	0	1	1	0	1	0	0	0	0	12268	1131	39	0		0	POLDIP2	17	26684529	RNA	DEL	G	TCGA-A7-A5ZX-01A-12D-A29N-09		26684529	54510681	25	9102										
MCM3AP	0	genome.wustl.edu	37	chr21	47664837	47664837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	gaagcagccggctgccccctGcctcagcaaactcagtgaca	10	16	2	1			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	21	47664837	47664837	G	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4922	p.A1641E	0.001	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	47	0	0	27	4	12.9	-	-	-	T	47664837	G	T	47664837	3	4	153	1	0	0	0	0	1	0	0	0	9459	1319	46	4	1044	4	MCM3AP	21	47664837	Missense_Mutation	SNP	G	TCGA-A7-A5ZX-01A-12D-A29N-09		47664837	465058	26	9103										
RFPL2	0	genome.wustl.edu	37	chr22	32587157	32587157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	ccattctgtgcttgttcccaCgtccacctcccagcagtggc	8	17	1	0			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	22	32587157	32587157	C	T	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	missense	c.739	p.V247M	0.812	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	167	0	0	100	21	17.36	-	-	-	T	32587157	C	T	32587157	3	4	153	1	0	0	0	0	1	0	0	0	13337	536	19	1	401	1	RFPL2	22	32587157	Missense_Mutation	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09		32587157	18717409	27	9104										
DMD	0	genome.wustl.edu	37	chrX	32361404	32361404	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.370529243110094	1.996138996139	0	2.14968814968815	0.0285714285714286	0.251737451737452	0	cttctttgagacctcaaatcCtgttcatggtgcagacatta	7	10	3	2			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	X	32361404	32361404	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	splice_site	c.5587-1	e40-1	1.000	-	-	-	no_errors	DMD	HGNC	ENSG00000198947	74	0	0	40	15	27.27	-	-	-	G	32361404	C	G	32361404	5	3	153	1	0	0	0	0	0	0	1	0	4616	695	24	4	5779	4	DMD	23	32361404	Splice_Site	SNP	C	TCGA-A7-A5ZX-01A-12D-A29N-09		32361404	122909156	28	9105										
ARID1A	0	genome.wustl.edu	37	chr1	27101427	27101428	+	Frame_Shift_Ins	INS	-	-	TA													0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	atgacaaggccccctccatcINStaactaccagcccccaccaa							TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	1	27101427	27101428	-	TA	INS	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_ins	c.4709_4710	p.N1571fs	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	57	0	0	57	38	40	-	-	-	TA	27101428	-	TA	27101427	7	5	154	1	0	1	1	0	0	0	0	0	915	913	32	0	4779	0	ARID1A	1	27101427	Frame_Shift_Ins	INS	-	TCGA-A8-A06N-01A-11W-A019-09		27101427	222149194	1	9106										
TRIM33	0	genome.wustl.edu	37	chr1	115006984	115006984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tatctgtctgcattcttggcGgcatactgggcaccgtatta	10	10	3	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	1	115006984	115006984	G	A	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	missense	c.553	p.R185C	1.000	smart_Znf_PHD,pfscan_Znf_RING	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	116	0	0	87	23	20.91	-	-	-	A	115006984	G	A	115006984	3	1	154	1	0	0	0	0	1	0	0	0	16603	1116	39	1	2906	1	TRIM33	1	115006984	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	87905557	115006984	134243637	2	9107										
FLG	0	genome.wustl.edu	37	chr1	152283965	152283965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tccagtgctggtcctggtccGcccatgggcagactcagact	12	14	1	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	1	152283965	152283965	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.3397	p.R1133	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	197	0	0	196	53	20.62	-	-	-	T	152283965	G	T	152283965	2	4	154	1	0	0	0	0	0	0	0	1	5968	1086	38	3		3	FLG	1	152283965	Silent	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	37276981	152283965	96966656	3	9108										
RGS8	0	genome.wustl.edu	37	chr1	182616032	182616032	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ttcttcctcgtggcttctcgGgtctggaagtcaatgtttac	10	10	4	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	1	182616032	182616032	G	C	SNP	RGS8	ENST00000258302	human	ensembl	69_37n	-1	known	silent	c.435	p.T145	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS8	HGNC	ENSG00000135824	77	0	0	89	57	39.04	-	-	-	C	182616032	G	C	182616032	2	2	154	1	0	0	0	0	0	0	0	1	13396	1219	43	4		4	RGS8	1	182616032	Silent	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	30332067	182616032	66634589	4	9109										
OR2T27	0	genome.wustl.edu	37	chr1	248813788	248813788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tcttgcggctcatgaggacaGgatagtgcagagggttgcag	16	7	2	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	1	248813788	248813788	G	A	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.398	p.P133L	0.022	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	131	0	0	181	38	17.35	-	-	-	A	248813788	G	A	248813788	3	1	154	1	0	0	0	0	1	0	0	0	11094	1000	35	4	558	4	OR2T27	1	248813788	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	66197756	248813788	436833	5	9110										
DYSF	0	genome.wustl.edu	37	chr2	71828631	71828631	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ctcttttcttcactccagccGgccatccaccatattcctgg	5	17	3	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	2	71828631	71828631	G	A	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.3939	p.P1313	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	43	0	0	54	8	12.9	-	-	-	A	71828631	G	A	71828631	2	1	154	1	0	0	0	0	0	0	0	1	4894	1103	39	1		1	DYSF	2	71828631	Silent	SNP	G	TCGA-A8-A06N-01A-11W-A019-09		71828631	171370742	6	9111										
PGAP1	0	genome.wustl.edu	37	chr2	197707464	197707464	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ccttgattttattgaaacagTgtaagtatttccaagaattg	7	5	0	3			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	2	197707464	197707464	T	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.2611	p.T871S	0.986	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	162	0	0	90	19	17.43	-	-	-	A	197707464	T	A	197707464	3	1	154	1	0	0	0	0	1	0	0	0	11851	1696	59	5	165	5	PGAP1	2	197707464	Missense_Mutation	SNP	T	TCGA-A8-A06N-01A-11W-A019-09	125878833	197707464	45491909	7	9112										
TTC14	0	genome.wustl.edu	37	chr3	180320056	180320056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tgcattctctagccatggacCgggaccttttgcggcagtcg	12	12	1	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	3	180320056	180320056	C	T	SNP	TTC14	ENST00000296015	human	ensembl	69_37n	1	known	missense	c.7	p.R3W	1.000	NULL	pfam_TPR-1,superfamily_NA-bd_OB-fold-like,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728	17	0	0	10	8	42.11	-	-	-	T	180320056	C	T	180320056	3	4	154	1	0	0	0	0	1	0	0	0	16778	643	23	1	9	1	TTC14	3	180320056	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		180320056	17702374	8	9113										
RNF168	0	genome.wustl.edu	37	chr3	196199408	196199408	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	agtagggaactctggttttaGgtcgctcgtgacttaagaca	12	7	1	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	3	196199408	196199408	G	C	SNP	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	missense	c.998	p.P333R	0.003	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	123	0	0	104	38	26.76	-	-	-	C	196199408	G	C	196199408	3	2	154	1	0	0	0	0	1	0	0	0	13545	1000	35	4	721	4	RNF168	3	196199408	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	15879352	196199408	1823022	9	9114										
CDH10	0	genome.wustl.edu	37	chr5	24491920	24491920	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	aatccattttttctggttaaGattctggcagtattatctaa	6	6	3	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	5	24491920	24491920	G	T	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	silent	c.1641	p.I547	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	114	0	0	85	16	15.84	-	-	-	T	24491920	G	T	24491920	2	4	154	1	0	0	0	0	0	0	0	1	3125	932	33	2		2	CDH10	5	24491920	Silent	SNP	G	TCGA-A8-A06N-01A-11W-A019-09		24491920	156423340	10	9115										
RXFP3	0	genome.wustl.edu	37	chr5	33937261	33937261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	gctcaccctgcccttctgggCggtggagaacgctcttgact	12	14	3	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	5	33937261	33937261	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	69_37n	1	known	missense	c.416	p.A139V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631	21	0	0	16	7	30.43	-	-	-	T	33937261	C	T	33937261	3	4	154	1	0	0	0	0	1	0	0	0	13847	768	27	1	418	1	RXFP3	5	33937261	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09	9445341	33937261	146977999	11	9116										
CEP120	0	genome.wustl.edu	37	chr5	122724169	122724169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	accaatctccaaggcatgtaTactccttaagtctattgaaa	5	10	2	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	5	122724169	122724169	T	G	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.1387	p.I463L	0.156	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	208	0	0	199	69	25.75	-	-	-	G	122724169	T	G	122724169	3	3	154	1	0	0	0	0	1	0	0	0	3275	1406	49	5	1621	5	CEP120	5	122724169	Missense_Mutation	SNP	T	TCGA-A8-A06N-01A-11W-A019-09	88786908	122724169	58191091	12	9117										
PCDHA9	0	genome.wustl.edu	37	chr5	140229518	140229518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	acatcttcacggtgtctgcgCgggacgctgacgcgcaggag	15	12	3	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	5	140229518	140229518	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.1438	p.R480W	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	41	0	0	25	19	43.18	-	-	-	T	140229518	C	T	140229518	3	4	154	1	0	0	0	0	1	0	0	0	11604	759	27	1	1440	1	PCDHA9	5	140229518	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09	17505349	140229518	40685742	13	9118										
SYNPO	0	genome.wustl.edu	37	chr5	150029357	150029357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ccacacgccagagctggcccGctgcccatcacctaccatgt	8	19	1	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	5	150029357	150029357	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	missense	c.2252	p.R751H	1.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	84	0	0	73	23	23.71	-	-	-	A	150029357	G	A	150029357	3	1	154	1	0	0	0	0	1	0	0	0	15548	1087	38	1	2258	1	SYNPO	5	150029357	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	9799839	150029357	30885903	14	9119										
ZNF782	0	genome.wustl.edu	37	chr9	99580378	99580378	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	attacaattatatggtttctCcccggtgtgagttcgctgat	9	8	1	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	9	99580378	99580378	C	A	SNP	ZNF782	ENST00000481138	human	ensembl	69_37n	-1	known	nonsense	c.1927	p.E643*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597	456	0	0	449	130	22.41	-	-	-	A	99580378	C	A	99580378	4	1	154	1	0	0	0	0	0	1	0	0	18248	864	30	2	176	2	ZNF782	9	99580378	Nonsense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		99580378	41633053	15	9120										
LRRK2	0	genome.wustl.edu	37	chr12	40745381	40745381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	agctgaattagtctgtctgaCgagacgcattttattaccta	8	8	2	3			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	12	40745381	40745381	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.6422	p.T2141M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	61	0	0	23	13	36.11	-	-	-	T	40745381	C	T	40745381	3	4	154	1	0	0	0	0	1	0	0	0	9099	536	19	1	6596	1	LRRK2	12	40745381	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		40745381	93106514	16	9121										
SCN8A	0	genome.wustl.edu	37	chr12	52056740	52056740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ccgatggcagtcatcgggagGacgatgaggacagcaagccc	15	11	1	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	12	52056740	52056740	G	T	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.139	p.D47Y	0.884	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	335	0	0	312	244	43.88	-	-	-	T	52056740	G	T	52056740	3	4	154	1	0	0	0	0	1	0	0	0	14012	1174	41	2	141	2	SCN8A	12	52056740	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	11311359	52056740	81795155	17	9122										
SACS	0	genome.wustl.edu	37	chr13	23910010	23910010	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	cctaaaatctgcatccaaatCtctaaacatgcgtccgggac	6	13	2	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	13	23910010	23910010	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8005	p.D2669Y	1.000	superfamily_ATPase-like_ATP-bd	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	127	0	0	54	36	40	-	-	-	A	23910010	C	A	23910010	3	1	154	1	0	0	0	0	1	0	0	0	13890	913	32	2	5738	2	SACS	13	23910010	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		23910010	91259868	18	9123										
OXGR1	0	genome.wustl.edu	37	chr13	97639047	97639047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ctttgcttgctcaaggttccCgcttactttgcatctcactg	7	13	2	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	13	97639047	97639047	C	G	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	missense	c.967	p.G323R	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	282	0	0	145	49	25.26	-	-	-	G	97639047	C	G	97639047	3	3	154	1	0	0	0	0	1	0	0	0	11405	652	23	3	50	3	OXGR1	13	97639047	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09	73729037	97639047	17530831	19	9124										
FOXA1	0	genome.wustl.edu	37	chr14	38061313	38061313	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tgccaccttgacgaagcagtCattgaaggacagcgagtggc	13	10	1	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	14	38061313	38061313	C	T	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.676	p.D226N	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	15	0	0	6	4	40	-	-	-	T	38061313	C	T	38061313	3	4	154	1	0	0	0	0	1	0	0	0	6035	826	29	2	746	2	FOXA1	14	38061313	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		38061313	69288227	20	9125										
FMN1	0	genome.wustl.edu	37	chr15	33256332	33256332	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ttgaccttgtttttcttctcAtaagtctctgacagaggttt	7	8	3	3			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	15	33256332	33256332	A	G	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	silent	c.2445	p.Y815	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	218	0	0	98	126	56.25	-	-	-	G	33256332	A	G	33256332	2	3	154	1	0	0	0	0	0	0	0	1	5995	224	8	5		5	FMN1	15	33256332	Silent	SNP	A	TCGA-A8-A06N-01A-11W-A019-09		33256332	69275060	21	9126										
SRRM2	0	genome.wustl.edu	37	chr16	2816906	2816906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tcctagcatgtccccaacacCtcttgatcgctgcagatcac	6	16	2	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	16	2816906	2816906	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.6377	p.P2126L	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	217	0	0	210	135	39.13	-	-	-	T	2816906	C	T	2816906	3	4	154	1	0	0	0	0	1	0	0	0	15260	681	24	4	6415	4	SRRM2	16	2816906	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09		2816906	87537847	22	9127										
CLEC18B	0	genome.wustl.edu	37	chr16	74443490	74443490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tcgggttttgcagcgctggtCgttccagttgaaggcagctg	15	9	0	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	16	74443490	74443490	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	missense	c.1288	p.D430N	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	23	0	0	20	5	20	-	-	-	T	74443490	C	T	74443490	3	4	154	1	0	0	0	0	1	0	0	0	3533	884	31	1	87	1	CLEC18B	16	74443490	Missense_Mutation	SNP	C	TCGA-A8-A06N-01A-11W-A019-09	71626584	74443490	15911263	23	9128										
KCNJ12	0	genome.wustl.edu	37	chr17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	gcagcggccctacagacgggAgtcagagatctgagccaacc	13	13	2	3			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	17	21319943	21319943	A	G	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	missense	c.1289	p.E430G	1.000	NULL	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	9	0	0	12	6	33.33	-	-	-	G	21319943	A	G	21319943	3	3	154	1	0	0	0	0	1	0	0	0	8100	304	11	5	1291	5	KCNJ12	17	21319943	Missense_Mutation	SNP	A	TCGA-A8-A06N-01A-11W-A019-09		21319943	59875267	24	9129										
PHF12	0	genome.wustl.edu	37	chr17	27233908	27233909	+	Frame_Shift_Ins	INS	-	-	G													0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ctttggcaacaatactgcttINSgggggggttggcggggtctt							TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	17	27233908	27233909	-	G	INS	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2646_2645	p.S883fs	0.990:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	34	0	0	48	6	11.11	-	-	-	G	27233909	-	G	27233908	7	5	154	1	0	1	1	0	0	0	0	0	11897	1799	63	0	376	0	PHF12	17	27233908	Frame_Shift_Ins	INS	-	TCGA-A8-A06N-01A-11W-A019-09	5913965	27233908	53961302	25	9130										
CD300LF	0	genome.wustl.edu	37	chr17	72699195	72699195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tgttgtccaagtggtggccgGtcagagttggggagctgcta	17	7	1	1			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	17	72699195	72699195	G	T	SNP	CD300LF	ENST00000326165	human	ensembl	69_37n	-1	known	missense	c.425	p.T142N	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LF	HGNC	ENSG00000186074	36	0	0	64	78	54.93	-	-	-	T	72699195	G	T	72699195	3	4	154	1	0	0	0	0	1	0	0	0	3030	1261	44	4	467	4	CD300LF	17	72699195	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	45465287	72699195	8496015	26	9131										
USP36	0	genome.wustl.edu	37	chr17	76799860	76799861	+	Frame_Shift_Ins	INS	-	-	G													0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	cctcttctcagaggggctctINSgggggggctcactggcctct							TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	17	76799860	76799861	-	G	INS	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2417_2416	p.Q806fs	0.000:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	11	0	0	15	4	21.05	-	-	-	G	76799861	-	G	76799860	7	5	154	1	0	1	1	0	0	0	0	0	17164	1580	55	0	974	0	USP36	17	76799860	Frame_Shift_Ins	INS	-	TCGA-A8-A06N-01A-11W-A019-09	4100665	76799860	4395350	27	9132										
ZNF396	0	genome.wustl.edu	37	chr18	32949212	32949212	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	tttctaatgtgtcttttcctAtgtctaaaaagatttgagct	6	6	3	2			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	18	32949212	32949212	A	G	SNP	ZNF396	ENST00000589332	human	ensembl	69_37n	-1	known	silent	c.975	p.H325	0.365	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF396	HGNC	ENSG00000186496	93	0	0	75	29	27.88	-	-	-	G	32949212	A	G	32949212	2	3	154	1	0	0	0	0	0	0	0	1	17978	464	16	5		5	ZNF396	18	32949212	Silent	SNP	A	TCGA-A8-A06N-01A-11W-A019-09		32949212	45128036	28	9133										
FCGBP	0	genome.wustl.edu	37	chr19	40367787	40367787	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	cttaacacgaaacccgcgtcGcactggcagccctccacaca	7	18	0	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	19	40367787	40367787	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.13173	p.C4391	0.961	pfam_TIL_dom,superfamily_TIL_dom,smart_EGF-like	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	24	0	0	15	4	21.05	-	-	-	A	40367787	G	A	40367787	2	1	154	1	0	0	0	0	0	0	0	1	5824	1079	38	1		1	FCGBP	19	40367787	Silent	SNP	G	TCGA-A8-A06N-01A-11W-A019-09		40367787	18761196	29	9134										
CCDC8	0	genome.wustl.edu	37	chr19	46915313	46915313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.427710843373494	0	0.526413345690454	1	1	0	ggggcacacaaacatctcccGcgtttcccaagcgatccccc	8	18	1	0			TCGA-A8-A06N-01A-11W-A019-09	TCGA-A8-A06N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	03d266a3-eb3e-4893-af6b-cb70d197d98f	a29ad24e-ea1d-4640-84c8-c0cc08bfb173	19	46915313	46915313	G	A	SNP	CCDC8	ENST00000307522	human	ensembl	69_37n	-1	known	missense	c.755	p.A252V	0.000	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515	46	0	0	19	7	26.92	-	-	-	A	46915313	G	A	46915313	3	1	154	1	0	0	0	0	1	0	0	0	2880	1087	38	1	865	1	CCDC8	19	46915313	Missense_Mutation	SNP	G	TCGA-A8-A06N-01A-11W-A019-09	6547526	46915313	12213670	30	9135										
TCEB3	0	genome.wustl.edu	37	chr1	24082459	24082459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ttcaggacgcccgagagcagCggctacgagtactaacaaag	12	11	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	1	24082459	24082459	C	T	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	missense	c.1996	p.R666W	1.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	59	0	0	82	21	20.39	-	-	-	T	24082459	C	T	24082459	3	4	155	1	0	0	0	0	1	0	0	0	15776	759	27	1	2026	1	TCEB3	1	24082459	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		24082459	225168162	1	9136										
KDM4A	0	genome.wustl.edu	37	chr1	44133570	44133570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tgaccatactctgcccacgcCagaagcagctgagtttctta	8	13	2	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	1	44133570	44133570	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.1043	p.P348L	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	155	0	0	105	37	26.06	-	-	-	T	44133570	C	T	44133570	3	4	155	1	0	0	0	0	1	0	0	0	8182	594	21	4	1073	4	KDM4A	1	44133570	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	20051111	44133570	205117051	2	9137										
ANKRD34A	0	genome.wustl.edu	37	chr1	145473724	145473724	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	acccttgccacactgctggaCgcctgcaaggccaagggtac	11	15	0	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	1	145473724	145473724	C	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	1	known	silent	c.396	p.D132	0.307	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	45	0	0	35	5	12.5	-	-	-	T	145473724	C	T	145473724	2	4	155	1	0	0	0	0	0	0	0	1	661	535	19	1		1	ANKRD34A	1	145473724	Silent	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	101340154	145473724	103776897	3	9138										
MFSD4	0	genome.wustl.edu	37	chr1	205568262	205568262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gttttcccctttggcagataTtccaggctcagggcagctat	10	11	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	1	205568262	205568262	T	C	SNP	MFSD4	ENST00000367147	human	ensembl	69_37n	1	known	missense	c.1372	p.F458L	0.934	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514	256	0	0	332	46	12.14	-	-	-	C	205568262	T	C	205568262	3	2	155	1	0	0	0	0	1	0	0	0	9604	1493	52	5	1406	5	MFSD4	1	205568262	Missense_Mutation	SNP	T	TCGA-A8-A06O-01A-11W-A019-09	60094538	205568262	43682359	4	9139										
ABCG5	0	genome.wustl.edu	37	chr2	44055180	44055181	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gccgctcacccgtggaaatgINSccccccaagctgtagttgcc							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	2	44055180	44055181	-	C	INS	ABCG5	ENST00000260645	human	ensembl	69_37n	-1	known	frame_shift_ins	c.576_575	p.I193fs	0.500:1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG5	HGNC	ENSG00000138075	28	0	0	16	2	11.11	-	-	-	C	44055181	-	C	44055180	7	5	155	1	0	1	1	0	0	0	0	0	71	1306	46	0	1415	0	ABCG5	2	44055180	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09		44055180	199144193	5	9140										
NRXN1	0	genome.wustl.edu	37	chr2	51254940	51254941	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gcgcgcagttccgggggcagINSccccccgacgaaaaggccgc							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	2	51254940	51254941	-	C	INS	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	frame_shift_ins	c.472_471	p.L157fs	0.999:0.996	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	19	0	0	3	3	50	-	-	-	C	51254941	-	C	51254940	7	5	155	1	0	1	1	0	0	0	0	0	10738	962	34	0	4526	0	NRXN1	2	51254940	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09	7199760	51254940	191944433	6	9141										
MEIS1	0	genome.wustl.edu	37	chr2	66798466	66798467	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gttatacccaaccccagatgINScccccccatcctgctcagct							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	2	66798466	66798467	-	C	INS	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	frame_shift_ins	c.1203_1204	p.H403fs	1.000:1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	34	0	0	17	2	10.53	-	-	-	C	66798467	-	C	66798466	7	5	155	1	0	1	1	0	0	0	0	0	9538	1334	46	0		0	MEIS1	2	66798466	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09	15543526	66798466	176400907	7	9142										
PROKR1	0	genome.wustl.edu	37	chr2	68882405	68882405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	atgtgcatcctcaccgcctaCgtgctatgctgggcgccctt	10	15	1	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	2	68882405	68882405	C	T	SNP	PROKR1	ENST00000303786	human	ensembl	69_37n	1	known	silent	c.879	p.Y293	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PROKR1	HGNC	ENSG00000169618	93	0	0	17	41	70.69	-	-	-	T	68882405	C	T	68882405	2	4	155	1	0	0	0	0	0	0	0	1	12633	547	19	1		1	PROKR1	2	68882405	Silent	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	2083939	68882405	174316968	8	9143										
FGD5	0	genome.wustl.edu	37	chr3	14862541	14862541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	agaagaagtcatcctttaagCgcttcctggcactgacgttt	9	10	1	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	3	14862541	14862541	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.1963	p.R655C	0.977	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	76	0	0	117	61	34.08	-	-	-	T	14862541	C	T	14862541	3	4	155	1	0	0	0	0	1	0	0	0	5882	768	27	1	1965	1	FGD5	3	14862541	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		14862541	183159889	9	9144										
TPRG1	0	genome.wustl.edu	37	chr3	188925244	188925244	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	agagggagatgaccaaccctCtgagactgaccacctatcga	10	12	1	5			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	3	188925244	188925244	C	T	SNP	TPRG1	ENST00000345063	human	ensembl	69_37n	1	known	missense	c.71	p.S24F	0.922	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001	235	0	0	100	68	40.48	-	-	-	T	188925244	C	T	188925244	3	4	155	1	0	0	0	0	1	0	0	0	16514	913	32	2	73	2	TPRG1	3	188925244	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	174062703	188925244	9097186	10	9145										
PI4K2B	0	genome.wustl.edu	37	chr4	25256819	25256819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gcctgattcctaatcaggggTacctttccgaagcgggtgcc	12	12	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	4	25256819	25256819	T	C	SNP	PI4K2B	ENST00000264864	human	ensembl	69_37n	1	known	missense	c.556	p.Y186H	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210	97	0	0	73	11	13.1	-	-	-	C	25256819	T	C	25256819	3	2	155	1	0	0	0	0	1	0	0	0	11946	1638	57	5	566	5	PI4K2B	4	25256819	Missense_Mutation	SNP	T	TCGA-A8-A06O-01A-11W-A019-09		25256819	165897457	11	9146										
CCNG2	0	genome.wustl.edu	37	chr4	78081937	78081939	+	In_Frame_Del	DEL	GAA	GAA	-													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tgctggctgctagaatagttGaagaagactgcaatattcca							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	4	78081937	78081939	GAA	-	DEL	CCNG2	ENST00000316355	human	ensembl	69_37n	1	known	in_frame_del	c.340_342	p.E115in_frame_del	1.000:1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNG2	HGNC	ENSG00000138764	177	0	0	133	36	21.3	-	-	-	-	78081939	GAA	-	78081937	7	5	155	1	0	1	0	1	0	0	0	0	2953	1291	45	0	350	0	CCNG2	4	78081937	In_Frame_Del	DEL	GAA	TCGA-A8-A06O-01A-11W-A019-09	52825118	78081937	113072339	12	9147										
DNAH5	0	genome.wustl.edu	37	chr5	13719037	13719037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cggagtccttgtggaggatcGttggcaaatttaatggacat	13	6	0	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	5	13719037	13719037	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.12453	p.N4151	0.905	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	182	0	0	117	27	18.75	-	-	-	A	13719037	G	A	13719037	2	1	155	1	0	0	0	0	0	0	0	1	4640	1136	40	1		1	DNAH5	5	13719037	Silent	SNP	G	TCGA-A8-A06O-01A-11W-A019-09		13719037	167196223	13	9148										
MAST4	0	genome.wustl.edu	37	chr5	66461473	66461473	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggcagcattgcagttccccaAgccacgcttctggcagagag	12	13	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	5	66461473	66461473	A	C	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.6475	p.S2159R	0.005	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	17	0	0	6	4	40	-	-	-	C	66461473	A	C	66461473	3	2	155	1	0	0	0	0	1	0	0	0	9398	72	3	5	6710	5	MAST4	5	66461473	Missense_Mutation	SNP	A	TCGA-A8-A06O-01A-11W-A019-09	52742436	66461473	114453787	14	9149										
PCDHA1	0	genome.wustl.edu	37	chr5	140167380	140167380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggaacggcgggtgggcgagcGcgcgctgtcgaactacgtgt	19	10	0	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	5	140167380	140167380	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.1505	p.R502H	0.819	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	38	0	0	10	8	44.44	-	-	-	A	140167380	G	A	140167380	3	1	155	1	0	0	0	0	1	0	0	0	11592	1087	38	1	1507	1	PCDHA1	5	140167380	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	73705907	140167380	40747880	15	9150										
PCDHB8	0	genome.wustl.edu	37	chr5	140559119	140559119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	aggatccgcacctgcccctcGcctccctggtctccatcaac	7	20	2	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	5	140559119	140559119	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.1504	p.A502T	0.588	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	245	0	0	85	11	11.34	-	-	-	A	140559119	G	A	140559119	3	1	155	1	0	0	0	0	1	0	0	0	11621	1087	38	1	1506	1	PCDHB8	5	140559119	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	391739	140559119	40356141	16	9151										
CCND3	0	genome.wustl.edu	37	chr6	41908324	41908325	+	Splice_Site	INS	-	-	T													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	agcgctgctcctcacataccINStgggggagggcgcacagtca							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	6	41908324	41908325	-	T	INS	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	splice_site_ins	c.199-2_199-1	e2-1	1.000:1.000	-	-	-	no_errors	CCND3	HGNC	ENSG00000112576	11	0	0	4	2	33.33	-	-	-	T	41908325	-	T	41908324	8	5	155	1	0	1	1	0	0	0	1	0	2947	695	24	0	696	0	CCND3	6	41908324	Splice_Site	INS	-	TCGA-A8-A06O-01A-11W-A019-09		41908324	129206743	17	9152										
ZNF292	0	genome.wustl.edu	37	chr6	87969506	87969507	+	Frame_Shift_Del	DEL	AG	AG	-													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	aaaaaaagtcctgacaaaacAgaaagttctttacaagtgat							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	6	87969506	87969507	AG	-	DEL	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	frame_shift_del	c.6159_6160	p.E2054fs	0.961:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	106	0	0	24	34	57.63	-	-	-	-	87969507	AG	-	87969506	7	5	155	1	0	1	0	1	0	0	0	0	17922	175	7	0	6189	0	ZNF292	6	87969506	Frame_Shift_Del	DEL	AG	TCGA-A8-A06O-01A-11W-A019-09	46061182	87969506	83145561	18	9153										
C7orf65	0	genome.wustl.edu	37	chr7	47694923	47694923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	agaaggaagacggctctggcCgggccccagggagggaggca	19	10	1	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	7	47694923	47694923	C	T	SNP	C7orf65	ENST00000408988	human	ensembl	69_37n	1	putative	missense	c.47	p.P16L	0.003	NULL	NULL	-	no_errors	C7orf65	HGNC	ENSG00000221845	14	0	0	16	5	23.81	-	-	-	T	47694923	C	T	47694923	3	4	155	1	0	0	0	0	1	0	0	0	2434	652	23	1	49	1	C7orf65	7	47694923	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		47694923	111443740	19	9154										
PON1	0	genome.wustl.edu	37	chr7	94944672	94944672	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	taatcccatgagggttaaatGaagatacatcaaatttactt	6	6	1	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	7	94944672	94944672	G	T	SNP	PON1	ENST00000222381	human	ensembl	69_37n	-1	known	nonsense	c.332	p.S111*	1.000	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421	217	0	0	129	17	11.64	-	-	-	T	94944672	G	T	94944672	4	4	155	1	0	0	0	0	0	1	0	0	12322	1294	45	2	759	2	PON1	7	94944672	Nonsense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	47249749	94944672	64193991	20	9155										
LARP4B	0	genome.wustl.edu	37	chr10	876875	876875	+	Frame_Shift_Del	DEL	T	T	-													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	atatgcaaattcacagtttaTaaattttggtaaattatctc							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	10	876875	876875	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	frame_shift_del	c.793	p.I265fs	0.998	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	113	0	0	75	41	33.33	-	-	-	-	876875	T	-	876875	7	5	155	1	0	1	0	1	0	0	0	0	8685	1406	49	0	1463	0	LARP4B	10	876875	Frame_Shift_Del	DEL	T	TCGA-A8-A06O-01A-11W-A019-09		876875	134657872	21	9156	70	2								
LARP4B	0	genome.wustl.edu	37	chr10	876876	876876	+	Missense_Mutation	SNP	A	A	C													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tatgcaaattcacagtttatAaattttggtaaattatctcc							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	10	876876	876876	A	C	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.792	p.F264L	0.979	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	114	0	0	78	42	35	-	-	-	C	876876	A	C	876876	3	2	155	1	0	0	0	0	1	0	0	0	8685	359	13	5	1464	5	LARP4B	10	876876	Missense_Mutation	SNP	A	TCGA-A8-A06O-01A-11W-A019-09	1	876876	134657871	22	9157	70	2								
CTR9	0	genome.wustl.edu	37	chr11	10791787	10791787	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gcctccgaaagttctataagCaccaaaacactgaagttgta	7	10	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	11	10791787	10791787	C	G	SNP	CTR9	ENST00000361367	human	ensembl	69_37n	1	known	missense	c.2140	p.H714D	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730	125	0	0	38	74	66.07	-	-	-	G	10791787	C	G	10791787	3	3	155	1	0	0	0	0	1	0	0	0	4056	710	25	4	2206	4	CTR9	11	10791787	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		10791787	124214729	23	9158										
OR9Q1	0	genome.wustl.edu	37	chr11	57947558	57947558	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cctgcttccatggtggtgatCttggtgtcctacctgtttat	10	10	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	11	57947558	57947558	C	A	SNP	OR9Q1	ENST00000335397	human	ensembl	69_37n	1	known	silent	c.642	p.I214	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9Q1	HGNC	ENSG00000186509	281	0	0	125	45	26.47	-	-	-	A	57947558	C	A	57947558	2	1	155	1	0	0	0	0	0	0	0	1	11328	903	32	2		2	OR9Q1	11	57947558	Silent	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	47155771	57947558	77058958	24	9159										
DYNC2H1	0	genome.wustl.edu	37	chr11	103126208	103126208	+	Frame_Shift_Del	DEL	A	A	-													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	acagaaaacaaaactattacAacaggaagaagataagaaaa							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	11	103126208	103126208	A	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	frame_shift_del	c.10292	p.Q3431fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	30	0	0	7	2	22.22	-	-	-	-	103126208	A	-	103126208	7	5	155	1	0	1	0	1	0	0	0	0	4881	130	5	0	10562	0	DYNC2H1	11	103126208	Frame_Shift_Del	DEL	A	TCGA-A8-A06O-01A-11W-A019-09	45178650	103126208	31880308	25	9160										
FAIM2	0	genome.wustl.edu	37	chr12	50291851	50291851	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tggtctccggtggggaaaccGttgtcatagctggagctgct	15	9	2	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	12	50291851	50291851	G	A	SNP	FAIM2	ENST00000320634	human	ensembl	69_37n	-1	known	silent	c.234	p.N78	0.000	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	FAIM2	HGNC	ENSG00000135472	52	0	0	33	9	21.43	-	-	-	A	50291851	G	A	50291851	2	1	155	1	0	0	0	0	0	0	0	1	5416	1136	40	1		1	FAIM2	12	50291851	Silent	SNP	G	TCGA-A8-A06O-01A-11W-A019-09		50291851	83560044	26	9161										
TIMELESS	0	genome.wustl.edu	37	chr12	56817240	56817240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tagcagcacataggctcgaaCgacagttgaacatgcaaagc	10	10	0	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	12	56817240	56817240	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	missense	c.2110	p.V704I	0.650	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	89	0	0	85	16	15.84	-	-	-	T	56817240	C	T	56817240	3	4	155	1	0	0	0	0	1	0	0	0	15999	536	19	1	1564	1	TIMELESS	12	56817240	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	6525389	56817240	77034655	27	9162										
TBX3	0	genome.wustl.edu	37	chr12	115118704	115118706	+	In_Frame_Del	DEL	TGT	TGT	-													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	aaatccatgtttgtctgaaaTgttgttggtgagtttcagtt							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	12	115118704	115118706	TGT	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	in_frame_del	c.637_635	p.N212in_frame_del	1.000:1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	140	0	0	48	22	31.43	-	-	-	-	115118706	TGT	-	115118704	7	5	155	1	0	1	0	1	0	0	0	0	15754	1464	51	0	1622	0	TBX3	12	115118704	In_Frame_Del	DEL	TGT	TCGA-A8-A06O-01A-11W-A019-09	58301464	115118704	18733191	28	9163										
TPTE2	0	genome.wustl.edu	37	chr13	20041393	20041394	+	Frame_Shift_Ins	INS	-	-	A													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ttcctaagcaacttaatgtcINSaaaaaaaatgtaaatgacat							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	13	20041393	20041394	-	A	INS	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	frame_shift_ins	c.484_483	p.D161fs	0.051:0.027	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	167	0	0	111	16	12.6	-	-	-	A	20041394	-	A	20041393	7	5	155	1	0	1	1	0	0	0	0	0	16527	826	29	0	1140	0	TPTE2	13	20041393	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09		20041393	95128485	29	9164										
FLT3	0	genome.wustl.edu	37	chr13	28588649	28588649	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gtcaaattagggaaggatggCcgtttccttgagtcaaaagc	12	7	2	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	13	28588649	28588649	C	T	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	silent	c.2808	p.R936	0.805	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	58	0	0	55	9	14.06	-	-	-	T	28588649	C	T	28588649	2	4	155	1	0	0	0	0	0	0	0	1	5988	726	26	4		4	FLT3	13	28588649	Silent	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	8547256	28588649	86581229	30	9165										
RDH12	0	genome.wustl.edu	37	chr14	68192813	68192813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	caacaatgcgggagtaatgaTgtgtccatattccaagacag	10	8	0	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	14	68192813	68192813	T	C	SNP	RDH12	ENST00000267502	human	ensembl	69_37n	1	known	missense	c.389	p.M130T	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH12	HGNC	ENSG00000139988	191	0	0	167	31	15.66	-	-	-	C	68192813	T	C	68192813	3	2	155	1	0	0	0	0	1	0	0	0	13274	1464	51	5	403	5	RDH12	14	68192813	Missense_Mutation	SNP	T	TCGA-A8-A06O-01A-11W-A019-09		68192813	39156727	31	9166										
BLM	0	genome.wustl.edu	37	chr15	91304296	91304296	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tagatgactttgatgatgatGatgactgggaagacataatg	12	3	0	8			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	15	91304296	91304296	G	A	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.1693	p.D565N	1.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	127	0	0	93	21	18.42	-	-	-	A	91304296	G	A	91304296	3	1	155	1	0	0	0	0	1	0	0	0	1450	1290	45	2	1715	2	BLM	15	91304296	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09		91304296	11227096	32	9167										
BLM	0	genome.wustl.edu	37	chr15	91304368	91304368	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ctgcctatcaacccatcaagGaaggtcggccaattaaatca	7	12	3	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	15	91304368	91304368	G	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	nonsense	c.1765	p.E589*	1.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	115	0	0	69	17	19.77	-	-	-	T	91304368	G	T	91304368	4	4	155	1	0	0	0	0	0	1	0	0	1450	1175	41	2	1787	2	BLM	15	91304368	Nonsense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	72	91304368	11227024	33	9168										
ALDH1A3	0	genome.wustl.edu	37	chr15	101438349	101438350	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	aagcgggtgacgctggagctINSgggggggaagaacccctgca							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	15	101438349	101438350	-	G	INS	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	frame_shift_ins	c.842_843	p.K284fs	0.999:0.008	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	23	0	0	19	3	13.64	-	-	-	G	101438350	-	G	101438349	7	5	155	1	0	1	1	0	0	0	0	0	492	1580	55	0	872	0	ALDH1A3	15	101438349	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09	10133981	101438349	1093043	34	9169										
GPR97	0	genome.wustl.edu	37	chr16	57717983	57717984	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tgatgctgcctgctgggcccINSggggggctgtcttccactac							TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	16	57717983	57717984	-	G	INS	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	frame_shift_ins	c.1021_1022	p.A343fs	0.000:0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	46	0	0	34	4	10.53	-	-	-	G	57717984	-	G	57717983	7	5	155	1	0	1	1	0	0	0	0	0	6771	643	23	0	1055	0	GPR97	16	57717983	Frame_Shift_Ins	INS	-	TCGA-A8-A06O-01A-11W-A019-09		57717983	32636770	35	9170										
WWP2	0	genome.wustl.edu	37	chr16	69970309	69970309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cccacgagctgaaggagggcGgcgagagcatccgggtcaca	16	12	1	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	16	69970309	69970309	G	A	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.2071	p.G691S	0.998	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	23	0	0	1	4	80	-	-	-	A	69970309	G	A	69970309	3	1	155	1	0	0	0	0	1	0	0	0	17513	1116	39	1	2145	1	WWP2	16	69970309	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	12252326	69970309	20384444	36	9171										
ACADVL	0	genome.wustl.edu	37	chr17	7123807	7123807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ctctggacaagtcagattccCacccctctgacgctctgacc	7	17	4	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	17	7123807	7123807	C	T	SNP	ACADVL	ENST00000356839	human	ensembl	69_37n	1	known	missense	c.163	p.H55Y	0.000	NULL	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADVL	HGNC	ENSG00000072778	32	0	0	2	5	71.43	-	-	-	T	7123807	C	T	7123807	3	4	155	1	0	0	0	0	1	0	0	0	116	594	21	4	173	4	ACADVL	17	7123807	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		7123807	74071403	37	9172										
TP53	0	genome.wustl.edu	37	chr17	7577102	7577102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cctctgtgcgccggtctctcCcaggacaggcacaaacacgc	10	17	2	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	17	7577102	7577102	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.836	p.G279E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	66	0	0	32	37	53.62	-	-	-	T	7577102	C	T	7577102	3	4	155	1	0	0	0	0	1	0	0	0	16477	623	22	4	450	4	TP53	17	7577102	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	453295	7577102	73618108	38	9173										
PIK3R6	0	genome.wustl.edu	37	chr17	8726792	8726792	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggatgaaggggtccacagtcCgggatgtgtccagggaagga	18	7	0	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	17	8726792	8726792	C	T	SNP	PIK3R6	ENST00000311434	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIK3R6	HGNC	ENSG00000174083	32	0	0	4	4	50	-	-	-	T	8726792	C	T	8726792	1	4	155	0	1	0	0	0	0	0	0	0	11997	652	23	1		1	PIK3R6	17	8726792	RNA	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	1149690	8726792	72468418	39	9174										
TNS4	0	genome.wustl.edu	37	chr17	38645003	38645003	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tgggggtcgaggggagagacCctctgaggggggcagagggc	23	7	1	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	17	38645003	38645003	C	A	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.658	p.G220C	0.000	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	33	0	0	33	6	15.38	-	-	-	A	38645003	C	A	38645003	3	1	155	1	0	0	0	0	1	0	0	0	16440	623	22	4	1533	4	TNS4	17	38645003	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	29918211	38645003	42550207	40	9175										
STAT5A	0	genome.wustl.edu	37	chr17	40451780	40451780	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ctcctctagctcagtttgccCagctggcccagctgagcccc	9	18	2	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	17	40451780	40451780	C	T	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	nonsense	c.562	p.Q188*	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	21	0	0	14	9	39.13	-	-	-	T	40451780	C	T	40451780	4	4	155	1	0	0	0	0	0	1	0	0	15359	595	21	4	580	4	STAT5A	17	40451780	Nonsense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	1806777	40451780	40743430	41	9176										
NWD1	0	genome.wustl.edu	37	chr19	16902312	16902312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cagtctgtggagctcagctaCgggaaaacttcaggggaagc	14	9	3	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	19	16902312	16902312	C	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.3092	p.T1031M	0.038	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	42	0	0	66	66	50	-	-	-	T	16902312	C	T	16902312	3	4	155	1	0	0	0	0	1	0	0	0	10854	536	19	1	2725	1	NWD1	19	16902312	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		16902312	42226671	42	9177										
GPATCH1	0	genome.wustl.edu	37	chr19	33587282	33587282	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ttttaatcttttcagtggtgGttctgagagagctggcgatc	12	6	3	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	19	33587282	33587282	G	C	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.782	p.G261A	0.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	103	0	0	168	50	22.94	-	-	-	C	33587282	G	C	33587282	3	2	155	1	0	0	0	0	1	0	0	0	6640	1261	44	4	808	4	GPATCH1	19	33587282	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	16684970	33587282	25541701	43	9178										
ZNF571	0	genome.wustl.edu	37	chr19	38055754	38055754	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	acattcataaggtttttcacCtctgtgaattctctgatgtt	6	8	4	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	19	38055754	38055754	C	A	SNP	ZNF571	ENST00000328550	human	ensembl	69_37n	-1	known	missense	c.1576	p.G526C	0.984	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479	346	0	0	302	117	27.92	-	-	-	A	38055754	C	A	38055754	3	1	155	1	0	0	0	0	1	0	0	0	18099	681	24	4	257	4	ZNF571	19	38055754	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	4468472	38055754	21073229	44	9179										
CCDC155	0	genome.wustl.edu	37	chr19	49897775	49897775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggaggcaaggctgggaatgcCggtcagcttggaggagcaaa	18	7	1	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	19	49897775	49897775	C	T	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.86	p.P29L	0.052	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	54	0	0	78	21	21.21	-	-	-	T	49897775	C	T	49897775	3	4	155	1	0	0	0	0	1	0	0	0	2814	652	23	1	92	1	CCDC155	19	49897775	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	11842021	49897775	9231208	45	9180										
ZNF649	0	genome.wustl.edu	37	chr19	52395062	52395062	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cctaaatatgatttcaaagtTcttccgtgttcatagcgttg	7	8	3	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	19	52395062	52395062	T	G	SNP	ZNF649	ENST00000354957	human	ensembl	69_37n	-1	known	missense	c.327	p.R109S	0.206	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093	242	0	0	234	41	14.91	-	-	-	G	52395062	T	G	52395062	3	3	155	1	0	0	0	0	1	0	0	0	18160	1780	62	5	1194	5	ZNF649	19	52395062	Missense_Mutation	SNP	T	TCGA-A8-A06O-01A-11W-A019-09	2497287	52395062	6733921	46	9181										
SMOX	0	genome.wustl.edu	37	chr20	4163035	4163035	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggagaggagccccgggggggCaggtgggatgaggatgagca	23	6	0	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	20	4163035	4163035	C	A	SNP	SMOX	ENST00000305958	human	ensembl	69_37n	1	known	silent	c.909	p.G303	0.000	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826	44	0	0	31	10	23.81	-	-	-	A	4163035	C	A	4163035	2	1	155	1	0	0	0	0	0	0	0	1	14892	697	25	4		4	SMOX	20	4163035	Silent	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		4163035	58862485	47	9182										
HAO1	0	genome.wustl.edu	37	chr20	7915232	7915232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	tctgtcctaaaacagaagtcGacagatctgtttcagcaaca	7	10	3	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	20	7915232	7915232	G	A	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	missense	c.188	p.S63L	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	181	0	0	95	23	19.49	-	-	-	A	7915232	G	A	7915232	3	1	155	1	0	0	0	0	1	0	0	0	7002	1059	37	1	952	1	HAO1	20	7915232	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	3752197	7915232	55110288	48	9183										
CST3	0	genome.wustl.edu	37	chr20	23614578	23614578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cgtcctgacaggtggatttcGacaaggtcattgtgccctgc	12	11	1	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	20	23614578	23614578	G	A	SNP	CST3	ENST00000376925	human	ensembl	69_37n	-1	known	missense	c.416	p.S139L	0.000	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST3	HGNC	ENSG00000101439	63	0	0	29	5	14.71	-	-	-	A	23614578	G	A	23614578	3	1	155	1	0	0	0	0	1	0	0	0	4005	1059	37	1	28	1	CST3	20	23614578	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	15699346	23614578	39410942	49	9184										
CECR5	0	genome.wustl.edu	37	chr22	17630576	17630576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ttcagagcagcagggatcacTctgtggccccgcacaagcac	11	14	3	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	22	17630576	17630576	T	G	SNP	CECR5	ENST00000336737	human	ensembl	69_37n	-1	known	missense	c.186	p.R62S	0.012	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998	72	0	0	41	21	33.87	-	-	-	G	17630576	T	G	17630576	3	3	155	1	0	0	0	0	1	0	0	0	3236	1548	54	5	1113	5	CECR5	22	17630576	Missense_Mutation	SNP	T	TCGA-A8-A06O-01A-11W-A019-09		17630576	33673990	50	9185										
GTSE1	0	genome.wustl.edu	37	chr22	46712099	46712099	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	atgtttctgagctggcagcgGagcagctcacggcacccccc	12	15	2	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	22	46712099	46712099	G	C	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1222	p.E408Q	0.004	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	43	0	0	59	22	27.16	-	-	-	C	46712099	G	C	46712099	3	2	155	1	0	0	0	0	1	0	0	0	6936	1175	41	2	1244	2	GTSE1	22	46712099	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	29081523	46712099	4592467	51	9186										
GTSE1	0	genome.wustl.edu	37	chr22	46712226	46712226	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	gaataagactagaagtatcaGacggcgagattcctgtctaa	10	7	2	4			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	22	46712226	46712226	G	A	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1349	p.R450K	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	83	0	0	103	41	28.47	-	-	-	A	46712226	G	A	46712226	3	1	155	1	0	0	0	0	1	0	0	0	6936	942	33	2	1371	2	GTSE1	22	46712226	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	127	46712226	4592340	52	9187										
GYG2	0	genome.wustl.edu	37	chrX	2773101	2773101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	ggccccggaccccggatggcCggattgcttcaatagcgggg	16	13	1	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	2773101	2773101	C	T	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	missense	c.485	p.P162L	0.998	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	96	0	0	48	10	17.24	-	-	-	T	2773101	C	T	2773101	3	4	155	1	0	0	0	0	1	0	0	0	6957	652	23	1	503	1	GYG2	23	2773101	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09		2773101	152497459	53	9188										
TBL1X	0	genome.wustl.edu	37	chrX	9661244	9661244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cggttttgcaagaatatggaCggaagatggtgagttctgtg	15	4	1	3			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	9661244	9661244	C	T	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	missense	c.947	p.T316M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	84	0	0	54	30	35.71	-	-	-	T	9661244	C	T	9661244	3	4	155	1	0	0	0	0	1	0	0	0	15734	536	19	1	973	1	TBL1X	23	9661244	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	6888143	9661244	145609316	54	9189										
OTC	0	genome.wustl.edu	37	chrX	38212026	38212026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cttcatggttcgaaattttcGgtaagtgatggtcagagact	11	6	2	2			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	38212026	38212026	G	A	SNP	OTC	ENST00000039007	human	ensembl	69_37n	1	known	missense	c.77	p.R26Q	0.992	NULL	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473	98	0	0	86	46	34.85	-	-	-	A	38212026	G	A	38212026	3	1	155	1	0	0	0	0	1	0	0	0	11374	1130	39	1	79	1	OTC	23	38212026	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	28550782	38212026	117058534	55	9190										
SLC7A3	0	genome.wustl.edu	37	chrX	70145947	70145947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	catccagaccccaaatcgggCccaggtaccagctgtcatct	8	16	2	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	70145947	70145947	C	A	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	missense	c.1702	p.A568S	0.999	tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	92	0	0	80	43	34.96	-	-	-	A	70145947	C	A	70145947	3	1	155	1	0	0	0	0	1	0	0	0	14787	739	26	4	165	4	SLC7A3	23	70145947	Missense_Mutation	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	31933921	70145947	85124613	56	9191										
SLC6A14	0	genome.wustl.edu	37	chrX	115584214	115584214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	cattcattgcctatccagagGctctagcccaactcccaggt	7	15	2	1			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	115584214	115584214	G	T	SNP	SLC6A14	ENST00000371900	human	ensembl	69_37n	1	known	missense	c.1192	p.A398S	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916	315	0	0	252	52	17.05	-	-	-	T	115584214	G	T	115584214	3	4	155	1	0	0	0	0	1	0	0	0	14766	1203	42	4	1226	4	SLC6A14	23	115584214	Missense_Mutation	SNP	G	TCGA-A8-A06O-01A-11W-A019-09	45438267	115584214	39686346	57	9192										
FAM58A	0	genome.wustl.edu	37	chrX	152860004	152860004	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.987712295450081	0.752631578947368	0	0.83625730994152	0.166666666666667	0.696581196581198	0	caccagttccccagtatgtaCcttgtgtggatgctggaagg	12	10	0	0			TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29cd408e-a04b-418a-85e2-6ef95840ddbc	62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8	X	152860004	152860004	C	A	SNP	FAM58A	ENST00000406277	human	ensembl	69_37n	-1	known	splice_site	c.423+1	e5+1	1.000	-	-	-	no_errors	FAM58A	HGNC	ENSG00000147382	70	0	0	26	5	16.13	-	-	-	A	152860004	C	A	152860004	5	1	155	1	0	0	0	0	0	0	1	0	5635	521	18	4	328	4	FAM58A	23	152860004	Splice_Site	SNP	C	TCGA-A8-A06O-01A-11W-A019-09	37275790	152860004	2410556	58	9193										
UROD	0	genome.wustl.edu	37	chr1	45478691	45478691	+	Frame_Shift_Del	DEL	G	G	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aggcaggccgttacttaccaGgtaagagtcagggtctggaa							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	1	45478691	45478691	G	-	DEL	UROD	ENST00000246337	human	ensembl	69_37n	1	known	frame_shift_del	c.133	p.E45fs	1.000	pfam_Uroporphyrinogen_deCOase,tigrfam_Uroporphyrinogen_deCO2ase_HemE	pfam_Uroporphyrinogen_deCOase,tigrfam_Uroporphyrinogen_deCO2ase_HemE	-	no_errors	UROD	HGNC	ENSG00000126088	42	0	0	20	29	59.18	-	-	-	-	45478691	G	-	45478691	7	5	156	1	0	1	0	1	0	0	0	0	17126	1014	35	0	139	0	UROD	1	45478691	Frame_Shift_Del	DEL	G	TCGA-A8-A06P-01A-11W-A019-09		45478691	203771930	1	9194										
NBPF9	0	genome.wustl.edu	37	chr1	144827878	144827879	+	In_Frame_Ins	INS	-	-	AGG													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gaagatcaaagaaggaaagaINSagaaggggaagaaaagaagg							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	1	144827878	144827879	-	AGG	INS	NBPF9	ENST00000375552	human	ensembl	69_37n	1	known	in_frame_ins	c.1757_1758	p.587in_frame_insG	0.025:0.025	NULL	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF9	HGNC	ENSG00000168614	9	0	0	32	5	13.51	-	-	-	AGG	144827879	-	AGG	144827878	7	5	156	1	0	1	1	0	0	0	0	0	10271	243	9	0	2607	0	NBPF9	1	144827878	In_Frame_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	99349187	144827878	104422743	2	9195										
POGK	0	genome.wustl.edu	37	chr1	166810249	166810249	+	Frame_Shift_Del	DEL	A	A	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gaaagaagaggaagaggaagAagagattcagagccgggaac							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	1	166810249	166810249	A	-	DEL	POGK	ENST00000367875	human	ensembl	69_37n	1	known	frame_shift_del	c.56	p.E20fs	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157	92	0	0	34	38	52.78	-	-	-	-	166810249	A	-	166810249	7	5	156	1	0	1	0	1	0	0	0	0	12259	246	9	0	58	0	POGK	1	166810249	Frame_Shift_Del	DEL	A	TCGA-A8-A06P-01A-11W-A019-09	21982371	166810249	82440372	3	9196										
CTNNA2	0	genome.wustl.edu	37	chr2	80773103	80773103	+	Frame_Shift_Del	DEL	C	C	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	caggataacatggacgtcttCaaagaccagtgggagaagca							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	2	80773103	80773103	C	-	DEL	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	frame_shift_del	c.1557	p.F519fs	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	62	0	0	39	52	55.32	-	-	-	-	80773103	C	-	80773103	7	5	156	1	0	1	0	1	0	0	0	0	4045	825	29	0	1285	0	CTNNA2	2	80773103	Frame_Shift_Del	DEL	C	TCGA-A8-A06P-01A-11W-A019-09		80773103	162426270	4	9197										
LAMB2	0	genome.wustl.edu	37	chr3	49158663	49158663	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aggccttgggcaggggtcacTggcaggtgttgtagatctgc	17	8	2	1			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	49158663	49158663	T	A	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.5393	p.Q1798L	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	19	0	0	13	5	26.32	-	-	-	A	49158663	T	A	49158663	3	1	156	1	0	0	0	0	1	0	0	0	8665	1580	55	5	7	5	LAMB2	3	49158663	Missense_Mutation	SNP	T	TCGA-A8-A06P-01A-11W-A019-09		49158663	148863767	5	9198										
POLQ	0	genome.wustl.edu	37	chr3	121207309	121207309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	catcactgaagctatcaaatAgtaaactatcactcatattc	3	10	4	1			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	121207309	121207309	A	G	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.4469	p.L1490P	0.993	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	229	0	0	203	25	10.96	-	-	-	G	121207309	A	G	121207309	3	3	156	1	0	0	0	0	1	0	0	0	12282	420	15	5	3363	5	POLQ	3	121207309	Missense_Mutation	SNP	A	TCGA-A8-A06P-01A-11W-A019-09	72048646	121207309	76815121	6	9199										
CCDC48	0	genome.wustl.edu	37	chr3	128753127	128753128	+	Frame_Shift_Ins	INS	-	-	A													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	tgctggtggagcagctgaggINSactcagggctgcggtgggag							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	128753127	128753128	-	A	INS	CCDC48	ENST00000436022	human	ensembl	69_37n	1	known	frame_shift_ins	c.93_94	p.T31fs	0.023:0.020	NULL	NULL	-	no_errors	CCDC48	HGNC	ENSG00000114654	30	0	0	14	10	41.67	-	-	-	A	128753128	-	A	128753127	7	5	156	1	0	1	1	0	0	0	0	0	2846	1165	41	0	1422	0	CCDC48	3	128753127	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	7545818	128753127	69269303	7	9200										
LEKR1	0	genome.wustl.edu	37	chr3	156763225	156763225	+	Frame_Shift_Del	DEL	A	A	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gagaacagctcctggagctcAgtaagcttcgtggaagttta							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	156763225	156763225	A	-	DEL	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	frame_shift_del	c.1765	p.S589fs	0.968	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	196	0	0	66	81	54	-	-	-	-	156763225	A	-	156763225	7	5	156	1	0	1	0	1	0	0	0	0	8771	188	7	0	1811	0	LEKR1	3	156763225	Frame_Shift_Del	DEL	A	TCGA-A8-A06P-01A-11W-A019-09	28010098	156763225	41259205	8	9201										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	126	0	0	72	30	29.41	-	-	-	A	178936091	G	A	178936091	3	1	156	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A06P-01A-11W-A019-09	22172866	178936091	19086339	9	9202										
C3orf43	0	genome.wustl.edu	37	chr3	196234930	196234930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	catccctgatgtacatctgcCtcactttagcagtatagtgt	7	11	2	1			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	3	196234930	196234930	C	T	SNP	C3orf43	ENST00000397537	human	ensembl	69_37n	-1	known	missense	c.473	p.R158K	0.146	NULL	NULL	-	no_errors	C3orf43	HGNC	ENSG00000214097	183	0	0	111	22	16.54	-	-	-	T	196234930	C	T	196234930	3	4	156	1	0	0	0	0	1	0	0	0	2250	681	24	4	175	4	C3orf43	3	196234930	Missense_Mutation	SNP	C	TCGA-A8-A06P-01A-11W-A019-09	17298839	196234930	1787500	10	9203										
AADAT	0	genome.wustl.edu	37	chr4	170988516	170988516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aaaccttcttctccccattcGtgtagaagctgtgatatcat	6	11	3	2			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	4	170988516	170988516	G	A	SNP	AADAT	ENST00000509167	human	ensembl	69_37n	-1	known	silent	c.936	p.H312	0.836	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AADAT	HGNC	ENSG00000109576	85	0	0	90	23	20.35	-	-	-	A	170988516	G	A	170988516	2	1	156	1	0	0	0	0	0	0	0	1	14	1136	40	1		1	AADAT	4	170988516	Silent	SNP	G	TCGA-A8-A06P-01A-11W-A019-09		170988516	20165760	11	9204										
MAP3K1	0	genome.wustl.edu	37	chr5	56178399	56178400	+	Frame_Shift_Ins	INS	-	-	T													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	agaaatgcagattagatgtcINSaatacagagctcaactccag							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	5	56178399	56178400	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3372_3373	p.N1124fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	224	0	0	90	31	25.62	-	-	-	T	56178400	-	T	56178399	7	5	156	1	0	1	1	0	0	0	0	0	9314	813	29	0	3426	0	MAP3K1	5	56178399	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		56178399	124736861	12	9205	71	2								
MAP3K1	0	genome.wustl.edu	37	chr5	56178400	56178400	+	Missense_Mutation	SNP	A	A	G													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	agaaatgcagattagatgtcAatacagagctcaactccagt							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	5	56178400	56178400	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.3373	p.N1125D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	226	0	0	89	35	28.23	-	-	-	G	56178400	A	G	56178400	3	3	156	1	0	0	0	0	1	0	0	0	9314	130	5	5	3427	5	MAP3K1	5	56178400	Missense_Mutation	SNP	A	TCGA-A8-A06P-01A-11W-A019-09	1	56178400	124736860	13	9206	71	2								
MAP3K1	0	genome.wustl.edu	37	chr5	56189387	56189387	+	Frame_Shift_Del	DEL	C	C	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gcaactactgctccatcgatCccttcacatttgtctcctgg							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	5	56189387	56189387	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.4419	p.P1474fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	102	0	0	76	27	26.21	-	-	-	-	56189387	C	-	56189387	7	5	156	1	0	1	0	1	0	0	0	0	9314	845	30	0	4497	0	MAP3K1	5	56189387	Frame_Shift_Del	DEL	C	TCGA-A8-A06P-01A-11W-A019-09	10987	56189387	124725873	14	9207										
TCF19	0	genome.wustl.edu	37	chr6	31127397	31127398	+	Frame_Shift_Ins	INS	-	-	A													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gcggccccagcaggagcctgINSgcctcatctctgggatccac							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	6	31127397	31127398	-	A	INS	TCF19	ENST00000376255	human	ensembl	69_37n	1	known	frame_shift_ins	c.151_152	p.G51fs	0.800:0.937	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310	10	0	0	11	3	21.43	-	-	-	A	31127398	-	A	31127397	7	5	156	1	0	1	1	0	0	0	0	0	15784	1348	47	0	153	0	TCF19	6	31127397	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		31127397	139987670	15	9208										
SYNCRIP	0	genome.wustl.edu	37	chr6	86350199	86350199	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	atcactgtctttaaactgttGaagaactgccaatgcaccgt	7	10	2	2			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	6	86350199	86350199	G	A	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	nonsense	c.232	p.Q78*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	220	0	0	195	69	26.14	-	-	-	A	86350199	G	A	86350199	4	1	156	1	0	0	0	0	0	1	0	0	15536	1299	45	2	1721	2	SYNCRIP	6	86350199	Nonsense_Mutation	SNP	G	TCGA-A8-A06P-01A-11W-A019-09	55222802	86350199	84764868	16	9209										
ACTL6B	0	genome.wustl.edu	37	chr7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	tctccttcttcttccagtttINSgggggggcaccctcccggac							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	13	0	0	9	4	30.77	-	-	-	G	100245131	-	G	100245130	7	5	156	1	0	1	1	0	0	0	0	0	199	1799	63	0	612	0	ACTL6B	7	100245130	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		100245130	58893533	17	9210										
HIPK2	0	genome.wustl.edu	37	chr7	139281654	139281654	+	Frame_Shift_Del	DEL	A	A	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gggctactgtgcaccatggcAcagcggggaggtgtgttctc							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	7	139281654	139281654	A	-	DEL	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	frame_shift_del	c.2526	p.C842fs	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	60	0	0	32	14	30.43	-	-	-	-	139281654	A	-	139281654	7	5	156	1	0	1	0	1	0	0	0	0	7168	157	6	0	1086	0	HIPK2	7	139281654	Frame_Shift_Del	DEL	A	TCGA-A8-A06P-01A-11W-A019-09	39036524	139281654	19857009	18	9211										
ABCB8	0	genome.wustl.edu	37	chr7	150742383	150742384	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	ggatgccccgaggacagcggINSccccaccgcccaaaaagcca							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	7	150742383	150742384	-	C	INS	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	frame_shift_ins	c.2155_2156	p.P721fs	0.000:0.001	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	29	0	0	22	4	15.38	-	-	-	C	150742384	-	C	150742383	7	5	156	1	0	1	1	0	0	0	0	0	47	1203	42	0	2166	0	ABCB8	7	150742383	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	11460729	150742383	8396280	19	9212										
MLL3	0	genome.wustl.edu	37	chr7	151904386	151904386	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	tctacctcaggcactataccTggtctgtatggtttcctttt	7	11	3	0			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	7	151904386	151904386	T	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.3840	p.P1280	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	488	0	0	176	134	43.23	-	-	-	C	151904386	T	C	151904386	2	2	156	1	0	0	0	0	0	0	0	1	9693	1594	55	5		5	MLL3	7	151904386	Silent	SNP	T	TCGA-A8-A06P-01A-11W-A019-09	1162003	151904386	7234277	20	9213										
GDAP1	0	genome.wustl.edu	37	chr8	75276444	75276444	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	taatctctgcagtgctgccaAcagcattccgggtggccaag	11	12	1	0			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	8	75276444	75276444	A	G	SNP	GDAP1	ENST00000220822	human	ensembl	69_37n	1	known	missense	c.919	p.T307A	1.000	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381	140	1	0.71	241	34	12.36	-	-	-	G	75276444	A	G	75276444	3	3	156	1	0	0	0	0	1	0	0	0	6358	43	2	5	941	5	GDAP1	8	75276444	Missense_Mutation	SNP	A	TCGA-A8-A06P-01A-11W-A019-09		75276444	71087578	21	9214										
BOP1	0	genome.wustl.edu	37	chr8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gagaggagaggtgcagaggaINSgggggggctgcaaggaaaca							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	8	145512978	145512979	-	G	INS	BOP1	ENST00000307404	human	ensembl	69_37n	-1	known	frame_shift_ins	c.107_106	p.L36fs	0.008:0.001	NULL	pfam_BOP1_N_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BOP1	HGNC	ENSG00000170727	19	0	0	17	2	10.53	-	-	-	G	145512979	-	G	145512978	7	5	156	1	0	1	1	0	0	0	0	0	1495	304	11	0	2193	0	BOP1	8	145512978	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	70236534	145512978	851044	22	9215										
HHEX	0	genome.wustl.edu	37	chr10	94454508	94454509	+	Frame_Shift_Ins	INS	-	-	CC													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	cattgagggcgataaaagctINSattttaatgctggatgatga							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	10	94454508	94454509	-	CC	INS	HHEX	ENST00000282728	human	ensembl	69_37n	1	known	frame_shift_ins	c.796_797	p.Y266fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HHEX	HGNC	ENSG00000152804	84	0	0	60	55	47.83	-	-	-	CC	94454509	-	CC	94454508	7	5	156	1	0	1	1	0	0	0	0	0	7142	1522	53	0	810	0	HHEX	10	94454508	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		94454508	41080239	23	9216										
SUFU	0	genome.wustl.edu	37	chr10	104356980	104356981	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	cctgggatgacctgagccggINSccccccgaggatgacgagga							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	10	104356980	104356981	-	C	INS	SUFU	ENST00000369902	human	ensembl	69_37n	1	known	frame_shift_ins	c.840_841	p.E282fs	0.594:1.000	pfam_SUFU_C,pirsf_Suppressor_of_fused_protein	pfam_SUFU_C,pfam_SUFU_domain,pirsf_Suppressor_of_fused_protein	-	no_errors	SUFU	HGNC	ENSG00000107882	57	0	0	11	3	21.43	-	-	-	C	104356981	-	C	104356980	7	5	156	1	0	1	1	0	0	0	0	0	15459	1190	42	0	866	0	SUFU	10	104356980	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	9902472	104356980	31177767	24	9217										
MUC6	0	genome.wustl.edu	37	chr11	1016078	1016079	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	atgcaatggtgctggaggctINSaggtggctggatggggtggg							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	11	1016078	1016079	-	G	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6723_6722	p.A2242fs	0.000:0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	21	0	0	21	11	34.38	-	-	-	G	1016079	-	G	1016078	7	5	156	1	0	1	1	0	0	0	0	0	10052	1509	53	0	608	0	MUC6	11	1016078	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		1016078	133990438	25	9218										
GYLTL1B	0	genome.wustl.edu	37	chr11	45948372	45948373	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	tcctgccccatgaaccgccaINScccccccggcctcacgatgt							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	11	45948372	45948373	-	C	INS	GYLTL1B	ENST00000325468	human	ensembl	69_37n	1	known	frame_shift_ins	c.1275_1276	p.R427fs	0.002:0.023	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905	18	0	0	10	2	16.67	-	-	-	C	45948373	-	C	45948372	7	5	156	1	0	1	1	0	0	0	0	0	6958	146	6	0	1309	0	GYLTL1B	11	45948372	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	44932294	45948372	89058144	26	9219										
SMTNL1	0	genome.wustl.edu	37	chr11	57311158	57311158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aaaagagccagagggaggggCaggggtgattcccagctccc	16	10	0	3			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	11	57311158	57311158	C	A	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	missense	c.848	p.A283E	0.446	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	10	0	0	9	5	35.71	-	-	-	A	57311158	C	A	57311158	3	1	156	1	0	0	0	0	1	0	0	0	14904	710	25	4	858	4	SMTNL1	11	57311158	Missense_Mutation	SNP	C	TCGA-A8-A06P-01A-11W-A019-09	11362786	57311158	77695358	27	9220										
TPCN2	0	genome.wustl.edu	37	chr11	68822752	68822753	+	Frame_Shift_Ins	INS	-	-	CT													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	cgctgctccctgggagccgcINScctgcggcctgaccgagagt							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	11	68822752	68822753	-	CT	INS	TPCN2	ENST00000294309	human	ensembl	69_37n	1	known	frame_shift_ins	c.361_362	p.C122fs	0.999:1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	52	0	0	38	5	11.63	-	-	-	CT	68822753	-	CT	68822752	7	5	156	1	0	1	1	0	0	0	0	0	16492	739	26	0	375	0	TPCN2	11	68822752	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	11511594	68822752	66183764	28	9221										
CSAD	0	genome.wustl.edu	37	chr12	53552403	53552403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aagaagttgccccgggtcccGtggggctggtagccaatcat	14	11	1	1			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	12	53552403	53552403	G	A	SNP	CSAD	ENST00000379850	human	ensembl	69_37n	-1	novel	missense	c.1450	p.R484W	0.061	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSAD	HGNC	ENSG00000139631	35	0	0	18	10	35.71	-	-	-	A	53552403	G	A	53552403	3	1	156	1	0	0	0	0	1	0	0	0	3955	1136	40	1	111	1	CSAD	12	53552403	Missense_Mutation	SNP	G	TCGA-A8-A06P-01A-11W-A019-09		53552403	80299492	29	9222										
AAAS	0	genome.wustl.edu	37	chr12	53708115	53708115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aggtagggtccagggtccagAtaagaatgcagctctggcag	15	8	1	2			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	12	53708115	53708115	A	G	SNP	AAAS	ENST00000209873	human	ensembl	69_37n	-1	known	missense	c.656	p.I219T	1.000	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914	86	0	0	52	17	24.64	-	-	-	G	53708115	A	G	53708115	3	3	156	1	0	0	0	0	1	0	0	0	8	333	12	5	1024	5	AAAS	12	53708115	Missense_Mutation	SNP	A	TCGA-A8-A06P-01A-11W-A019-09	155712	53708115	80143780	30	9223										
NACA	0	genome.wustl.edu	37	chr12	57118242	57118242	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gtagggaaacctacctgtctCagcctggggctgcggcaact	13	12	1	0			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	12	57118242	57118242	C	T	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.64	p.E22K	1.000	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	32	0	0	18	9	33.33	-	-	-	T	57118242	C	T	57118242	3	4	156	1	0	0	0	0	1	0	0	0	10205	835	29	2	6204	2	NACA	12	57118242	Missense_Mutation	SNP	C	TCGA-A8-A06P-01A-11W-A019-09	3410127	57118242	76733653	31	9224										
MYCBP2	0	genome.wustl.edu	37	chr13	77671946	77671946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	caataccttgtttttgttgaTgctacccatcttagatatat	5	8	1	2			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	13	77671946	77671946	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.9343	p.I3115V	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	195	0	0	129	106	44.92	-	-	-	C	77671946	T	C	77671946	3	2	156	1	0	0	0	0	1	0	0	0	10090	1464	51	5	4805	5	MYCBP2	13	77671946	Missense_Mutation	SNP	T	TCGA-A8-A06P-01A-11W-A019-09		77671946	37497932	32	9225										
EDDM3A	0	genome.wustl.edu	37	chr14	21216114	21216114	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	agcttcagctacattgaattCcattgtggcgtagatggata	10	7	1	2			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	14	21216114	21216114	C	A	SNP	EDDM3A	ENST00000326842	human	ensembl	69_37n	1	known	missense	c.375	p.F125L	0.315	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562	160	0	0	108	16	12.9	-	-	-	A	21216114	C	A	21216114	3	1	156	1	0	0	0	0	1	0	0	0	4944	854	30	2	377	2	EDDM3A	14	21216114	Missense_Mutation	SNP	C	TCGA-A8-A06P-01A-11W-A019-09		21216114	86133426	33	9226										
KIAA0195	0	genome.wustl.edu	37	chr17	73487171	73487172	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	gccacttcctgagggtgctcINSggggggacatcgccaacgct							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	17	73487171	73487172	-	G	INS	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	frame_shift_ins	c.1170_1171	p.T392fs	0.998:0.997	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	19	0	0	17	2	10.53	-	-	-	G	73487172	-	G	73487171	7	5	156	1	0	1	1	0	0	0	0	0	8212	871	31	0	1212	0	KIAA0195	17	73487171	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09		73487171	7708039	34	9227										
ENPP7	0	genome.wustl.edu	37	chr17	77709202	77709203	+	Frame_Shift_Ins	INS	-	-	CC													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	cggcatgacgaccgtggacaINSaacgggctggcgacctggtt							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	17	77709202	77709203	-	CC	INS	ENPP7	ENST00000328313	human	ensembl	69_37n	1	known	frame_shift_ins	c.760_761	p.K254fs	0.544:0.531	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156	38	0	0	37	19	33.93	-	-	-	CC	77709203	-	CC	77709202	7	5	156	1	0	1	1	0	0	0	0	0	5172	131	5	0	770	0	ENPP7	17	77709202	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	4222031	77709202	3486008	35	9228										
CBX2	0	genome.wustl.edu	37	chr17	77758219	77758220	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	aaagtggggaacacagggggINSccccccgcacacccatggtg							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	17	77758219	77758220	-	C	INS	CBX2	ENST00000310942	human	ensembl	69_37n	1	known	frame_shift_ins	c.977_978	p.H329fs	0.033:0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	12	0	0	4	2	33.33	-	-	-	C	77758220	-	C	77758219	7	5	156	1	0	1	1	0	0	0	0	0	2743	1203	42	0	1343	0	CBX2	17	77758219	Frame_Shift_Ins	INS	-	TCGA-A8-A06P-01A-11W-A019-09	49017	77758219	3436991	36	9229										
ATP9B	0	genome.wustl.edu	37	chr18	77137328	77137328	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	ctgcctcccgctgtatgtccTcaagtacctgaggcgcaagc	10	15	1	1			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	18	77137328	77137328	T	G	SNP	ATP9B	ENST00000426216	human	ensembl	69_37n	1	known	missense	c.3389	p.L1130R	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9B	HGNC	ENSG00000166377	43	0	0	25	10	28.57	-	-	-	G	77137328	T	G	77137328	3	3	156	1	0	0	0	0	1	0	0	0	1203	1551	54	5	3507	5	ATP9B	18	77137328	Missense_Mutation	SNP	T	TCGA-A8-A06P-01A-11W-A019-09		77137328	939920	37	9230										
PIP5K1C	0	genome.wustl.edu	37	chr19	3656491	3656491	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	actcgtcgtcgctggtgacgTagaagagggagccactggcg	16	10	0	3			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	19	3656491	3656491	T	C	SNP	PIP5K1C	ENST00000537021	human	ensembl	69_37n	-1	known	missense	c.533	p.Y178C	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	9	0	0	6	6	50	-	-	-	C	3656491	T	C	3656491	3	2	156	1	0	0	0	0	1	0	0	0	12015	1638	57	5	1525	5	PIP5K1C	19	3656491	Missense_Mutation	SNP	T	TCGA-A8-A06P-01A-11W-A019-09		3656491	55472492	38	9231										
TRIM28	0	genome.wustl.edu	37	chr19	59061549	59061549	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	accctggatctgaccctgatCcgtgcccgcctccaggagaa	10	16	1	3			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	19	59061549	59061549	C	T	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	silent	c.2229	p.I743	0.962	superfamily_Bromodomain,smart_Bromodomain	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	11	0	0	22	21	48.84	-	-	-	T	59061549	C	T	59061549	2	4	156	1	0	0	0	0	0	0	0	1	16598	845	30	2		2	TRIM28	19	59061549	Silent	SNP	C	TCGA-A8-A06P-01A-11W-A019-09	55405058	59061549	67434	39	9232										
PTCHD1	0	genome.wustl.edu	37	chrX	23412005	23412005	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	actaaatgggtaaaaaatgcCctggaagtgcatggggtagc	13	6	0	0			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	X	23412005	23412005	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	silent	c.2370	p.A790	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	166	0	0	150	25	14.29	-	-	-	T	23412005	C	T	23412005	2	4	156	1	0	0	0	0	0	0	0	1	12812	610	22	4		4	PTCHD1	23	23412005	Silent	SNP	C	TCGA-A8-A06P-01A-11W-A019-09		23412005	131858555	40	9233										
PRICKLE3	0	genome.wustl.edu	37	chrX	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-													0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	agaaataggttcccacctgaGtgtgtgtgtgtgtgtgagca							TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	69_37n	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	32	0	0	12	3	20	-	-	-	-	49040117	GT	-	49040116	7	5	156	1	0	1	0	1	0	0	0	0	12569	1044	36	0		0	PRICKLE3	23	49040116	Frame_Shift_Del	DEL	GT	TCGA-A8-A06P-01A-11W-A019-09	25628111	49040116	106230444	41	9234										
GPR101	0	genome.wustl.edu	37	chrX	136112380	136112380	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.402997126327904	2.20555555555556	0	2.48125	0.1	0.5224358974359	0	cctctgttccgggcaggtctGggtggctatcttctttcggg	14	11	4	0			TCGA-A8-A06P-01A-11W-A019-09	TCGA-A8-A06P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	239b3d55-c5d6-4478-9b7b-1cbad3c03c81	f8f99cc8-0355-4bf9-b26e-65603682d0f9	X	136112380	136112380	G	C	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	missense	c.1454	p.P485R	0.873	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	173	0	0	114	63	35.59	-	-	-	C	136112380	G	C	136112380	3	2	156	1	0	0	0	0	1	0	0	0	6672	1348	47	4	75	4	GPR101	23	136112380	Missense_Mutation	SNP	G	TCGA-A8-A06P-01A-11W-A019-09	87072264	136112380	19158180	42	9235										
KIF1B	0	genome.wustl.edu	37	chr1	10412697	10412697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cctttcttttaggtcgtattCggaataagcctgaggtggat	11	7	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	10412697	10412697	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.3820	p.R1274W	0.998	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	390	1	0.26	264	98	27.07	-	-	-	T	10412697	C	T	10412697	3	4	157	1	0	0	0	0	1	0	0	0	8336	875	31	1	5447	1	KIF1B	1	10412697	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		10412697	238837924	1	9236										
TMCO4	0	genome.wustl.edu	37	chr1	20097810	20097810	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gttgggtgtacctgagtgatCaccgtcgggtcgtccttcaa	13	10	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	20097810	20097810	C	A	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	silent	c.345	p.V115	0.043	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	104	0	0	61	14	18.67	-	-	-	A	20097810	C	A	20097810	2	1	157	1	0	0	0	0	0	0	0	1	16093	813	29	2		2	TMCO4	1	20097810	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	9685113	20097810	229152811	2	9237										
ZMYM4	0	genome.wustl.edu	37	chr1	35835660	35835660	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atggccaacagcaaaaaactCaagagggggaactgaaaatt	10	7	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	35835660	35835660	C	T	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	nonsense	c.871	p.Q291*	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	138	0	0	74	22	22.92	-	-	-	T	35835660	C	T	35835660	4	4	157	1	0	0	0	0	0	1	0	0	17798	827	29	2	893	2	ZMYM4	1	35835660	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	15737850	35835660	213414961	3	9238										
BTBD19	0	genome.wustl.edu	37	chr1	45279142	45279142	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cggagctgagcgccctggaaGagcagaaccggcaggaacca	15	12	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	45279142	45279142	G	A	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	1	known	missense	c.712	p.E238K	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD19	HGNC	ENSG00000222009	127	0	0	44	14	24.14	-	-	-	A	45279142	G	A	45279142	3	1	157	1	0	0	0	0	1	0	0	0	1551	943	33	2	738	2	BTBD19	1	45279142	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	9443482	45279142	203971479	4	9239										
TOE1	0	genome.wustl.edu	37	chr1	45807208	45807208	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	acccgttctatcctttccctGggcctcgcctgcttcaagcg	8	17	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	45807208	45807208	G	A	SNP	TOE1	ENST00000372090	human	ensembl	69_37n	1	known	silent	c.300	p.L100	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,pfam_Znf_CCCH,superfamily_RNaseH-like_dom	-	no_errors	TOE1	HGNC	ENSG00000132773	128	0	0	46	19	29.23	-	-	-	A	45807208	G	A	45807208	2	1	157	1	0	0	0	0	0	0	0	1	16444	1335	47	4		4	TOE1	1	45807208	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	528066	45807208	203443413	5	9240										
ANGPTL3	0	genome.wustl.edu	37	chr1	63064371	63064371	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tactctctatatccagacttTtgtagaaaaacaagataata	4	7	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	63064371	63064371	T	C	SNP	ANGPTL3	ENST00000371129	human	ensembl	69_37n	1	known	missense	c.500	p.F167S	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	132	0	0	151	43	21.83	-	-	-	C	63064371	T	C	63064371	3	2	157	1	0	0	0	0	1	0	0	0	615	1841	64	5	506	5	ANGPTL3	1	63064371	Missense_Mutation	SNP	T	TCGA-A8-A06Q-01A-11W-A050-09	17257163	63064371	186186250	6	9241										
INSL5	0	genome.wustl.edu	37	chr1	67263791	67263791	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cactgaatgcttctttgactTccaaagctcttcagtgggca	8	11	3	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	67263791	67263791	T	A	SNP	INSL5	ENST00000304526	human	ensembl	69_37n	-1	known	nonsense	c.313	p.K105*	0.000	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	-	no_errors	INSL5	HGNC	ENSG00000172410	165	0	0	121	51	29.48	-	-	-	A	67263791	T	A	67263791	4	1	157	1	0	0	0	0	0	1	0	0	7823	1792	62	5	98	5	INSL5	1	67263791	Nonsense_Mutation	SNP	T	TCGA-A8-A06Q-01A-11W-A050-09	4199420	67263791	181986830	7	9242										
MIER1	0	genome.wustl.edu	37	chr1	67450308	67450308	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	acaaagaggaagtaaaagttGaagggttacacattaatgga	11	3	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	67450308	67450308	G	C	SNP	MIER1	ENST00000401041	human	ensembl	69_37n	1	known	missense	c.1423	p.E475Q	0.995	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160	47	0	0	39	7	15.22	-	-	-	C	67450308	G	C	67450308	3	2	157	1	0	0	0	0	1	0	0	0	9651	1291	45	2	1554	2	MIER1	1	67450308	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	186517	67450308	181800313	8	9243										
PTPN22	0	genome.wustl.edu	37	chr1	114376945	114376945	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	attgaccttgcttggtctaaGtatcacagagtcatcaaatt	7	8	4	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	114376945	114376945	G	T	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.2011	p.L671I	0.988	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	104	0	0	63	48	42.86	-	-	-	T	114376945	G	T	114376945	3	4	157	1	0	0	0	0	1	0	0	0	12870	1029	36	4	463	4	PTPN22	1	114376945	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	46926637	114376945	134873676	9	9244										
BCAS2	0	genome.wustl.edu	37	chr1	115113329	115113329	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aaaacaatttaccttaacttCtgaagttccttctgtgcgtg	6	9	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	115113329	115113329	C	T	SNP	BCAS2	ENST00000369541	human	ensembl	69_37n	-1	known	silent	c.462	p.Q154	1.000	pfam_BCAS2	pfam_BCAS2	-	no_errors	BCAS2	HGNC	ENSG00000116752	103	0	0	76	46	37.4	-	-	-	T	115113329	C	T	115113329	2	4	157	1	0	0	0	0	0	0	0	1	1355	912	32	2		2	BCAS2	1	115113329	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	736384	115113329	134137292	10	9245										
SETDB1	0	genome.wustl.edu	37	chr1	150921914	150921914	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cacgtcctttcgaccaggatCtgtgggctctggtcattcct	10	13	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	150921914	150921914	C	A	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.1493	p.S498Y	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	217	0	0	128	35	21.47	-	-	-	A	150921914	C	A	150921914	3	1	157	1	0	0	0	0	1	0	0	0	14226	913	32	2	1535	2	SETDB1	1	150921914	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	35808585	150921914	98328707	11	9246										
RORC	0	genome.wustl.edu	37	chr1	151787669	151787669	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggcccagagcctgaggctttCaggaggccagggggacaggc	18	11	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	151787669	151787669	C	T	SNP	RORC	ENST00000392697	human	ensembl	69_37n	-1	known	silent	c.693	p.L231	0.084	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365	85	0	0	23	12	34.29	-	-	-	T	151787669	C	T	151787669	2	4	157	1	0	0	0	0	0	0	0	1	13616	813	29	2		2	RORC	1	151787669	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	865755	151787669	97462952	12	9247										
FLG	0	genome.wustl.edu	37	chr1	152282641	152282641	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	attctccctggcccacctgtGagtgtctagagctgccggcc	11	15	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	152282641	152282641	G	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	nonsense	c.4721	p.S1574*	0.002	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	170	0	0	100	33	24.44	-	-	-	C	152282641	G	C	152282641	4	2	157	1	0	0	0	0	0	1	0	0	5968	1294	45	2	7468	2	FLG	1	152282641	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	494972	152282641	96967980	13	9248										
FLG	0	genome.wustl.edu	37	chr1	152282818	152282818	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgtggctgtgatggtaccctGagtgtccagacctatctact	11	10	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	152282818	152282818	G	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	nonsense	c.4544	p.S1515*	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	202	0	0	124	47	27.49	-	-	-	C	152282818	G	C	152282818	4	2	157	1	0	0	0	0	0	1	0	0	5968	1294	45	2	7645	2	FLG	1	152282818	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	177	152282818	96967803	14	9249										
ASH1L	0	genome.wustl.edu	37	chr1	155448175	155448175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	catagaaacctggggttgttCagaagaacggtgttctctgt	12	7	2	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	155448175	155448175	C	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.4486	p.E1496Q	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	315	0	0	144	60	29.27	-	-	-	G	155448175	C	G	155448175	3	3	157	1	0	0	0	0	1	0	0	0	1045	835	29	2	4512	2	ASH1L	1	155448175	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	3165357	155448175	93802446	15	9250										
GON4L	0	genome.wustl.edu	37	chr1	155783569	155783569	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	acctcagcactgatgtgcctGatggctggtgtggtgacttt	13	9	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	155783569	155783569	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.1308	p.I436	0.443	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	82	0	0	54	16	22.86	-	-	-	A	155783569	G	A	155783569	2	1	157	1	0	0	0	0	0	0	0	1	6621	1280	45	2		2	GON4L	1	155783569	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	335394	155783569	93467052	16	9251										
CD1E	0	genome.wustl.edu	37	chr1	158326632	158326632	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgcttggcacaagtatcgtgGatcaaaaacagagtattgaa	10	6	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	158326632	158326632	G	A	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	nonsense	c.1113	p.W371*	0.004	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	128	0	0	63	58	47.54	-	-	-	A	158326632	G	A	158326632	4	1	157	1	0	0	0	0	0	1	0	0	3007	1183	41	2	1135	2	CD1E	1	158326632	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2543063	158326632	90923989	17	9252										
FMO4	0	genome.wustl.edu	37	chr1	171306533	171306533	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	catcccaaaaattgatgatgGaggctactgaaaaggaacag	10	7	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	171306533	171306533	G	C	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.1219	p.E407Q	0.596	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	440	0	0	628	137	17.89	-	-	-	C	171306533	G	C	171306533	3	2	157	1	0	0	0	0	1	0	0	0	6003	1175	41	2	1245	2	FMO4	1	171306533	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	12979901	171306533	77944088	18	9253										
ASTN1	0	genome.wustl.edu	37	chr1	176852045	176852045	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atgatcagagagatggtggtGagctgcttgtccggcacctg	15	8	1	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	176852045	176852045	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.3336	p.L1112	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	132	0	0	116	18	13.43	-	-	-	A	176852045	G	A	176852045	2	1	157	1	0	0	0	0	0	0	0	1	1068	1277	45	2		2	ASTN1	1	176852045	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	5545512	176852045	72398576	19	9254										
SMG7	0	genome.wustl.edu	37	chr1	183511387	183511387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atcagtgctatctacaagccGaaatttaagcaacaactgtg	7	9	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	183511387	183511387	G	A	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.1592	p.R531Q	0.999	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	91	0	0	147	33	18.23	-	-	-	A	183511387	G	A	183511387	3	1	157	1	0	0	0	0	1	0	0	0	14887	1058	37	1	1646	1	SMG7	1	183511387	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	6659342	183511387	65739234	20	9255										
NAV1	0	genome.wustl.edu	37	chr1	201751421	201751421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgatgctaagaagcccccctCgggcattgctcgcccctcca	9	17	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	201751421	201751421	C	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.1781	p.S594L	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	207	0	0	147	30	16.85	-	-	-	T	201751421	C	T	201751421	3	4	157	1	0	0	0	0	1	0	0	0	10255	893	31	1	1860	1	NAV1	1	201751421	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	18240034	201751421	47499200	21	9256										
SLC41A1	0	genome.wustl.edu	37	chr1	205767101	205767101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cctcccttgtggctggacttCgtcgggccagcaccacccag	11	17	0	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	205767101	205767101	C	T	SNP	SLC41A1	ENST00000367137	human	ensembl	69_37n	-1	known	missense	c.923	p.R308Q	1.000	NULL	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A1	HGNC	ENSG00000133065	130	1	0.76	123	24	16.22	-	-	-	T	205767101	C	T	205767101	3	4	157	1	0	0	0	0	1	0	0	0	14718	884	31	1	638	1	SLC41A1	1	205767101	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	4015680	205767101	43483520	22	9257										
KCTD3	0	genome.wustl.edu	37	chr1	215785242	215785242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caccaacaaactatttgtaaGactctcatcgactggaaaaa	5	10	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	215785242	215785242	G	C	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	missense	c.1541	p.R514T	0.997	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	81	0	0	260	42	13.86	-	-	-	C	215785242	G	C	215785242	3	2	157	1	0	0	0	0	1	0	0	0	8164	942	33	2	1599	2	KCTD3	1	215785242	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	10018141	215785242	33465379	23	9258										
BPNT1	0	genome.wustl.edu	37	chr1	220242756	220242756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttccttggttccatccagagGatcaacccagaccacgagct	8	14	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	1	220242756	220242756	G	A	SNP	BPNT1	ENST00000322067	human	ensembl	69_37n	-1	known	missense	c.352	p.P118S	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	BPNT1	HGNC	ENSG00000162813	72	0	0	91	13	12.5	-	-	-	A	220242756	G	A	220242756	3	1	157	1	0	0	0	0	1	0	0	0	1502	1174	41	2	594	2	BPNT1	1	220242756	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4457514	220242756	29007865	24	9259										
CRIM1	0	genome.wustl.edu	37	chr2	36668460	36668460	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agttctctccacgttgtcctGaagattctgttctgatcgag	9	10	3	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	36668460	36668460	G	A	SNP	CRIM1	ENST00000280527	human	ensembl	69_37n	1	known	missense	c.565	p.E189K	1.000	NULL	pfam_VWF_C,pfam_Prot_inh_I15_antistasin-like,superfamily_Prot_inh_I14/15_hirudin/antisn,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	228	0	0	151	45	22.84	-	-	-	A	36668460	G	A	36668460	3	1	157	1	0	0	0	0	1	0	0	0	3903	1291	45	2	575	2	CRIM1	2	36668460	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		36668460	206530913	25	9260										
DHX57	0	genome.wustl.edu	37	chr2	39053665	39053665	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caagacggaatacctcttttCtttcattttcccagaatcga	5	11	3	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	39053665	39053665	C	G	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.2806	p.E936Q	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	100	0	0	125	24	16	-	-	-	G	39053665	C	G	39053665	3	3	157	1	0	0	0	0	1	0	0	0	4549	922	32	2	1394	2	DHX57	2	39053665	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	2385205	39053665	204145708	26	9261										
CYP26B1	0	genome.wustl.edu	37	chr2	72371232	72371233	+	Frame_Shift_Ins	INS	-	-	C													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggtggtgctcgcccatgaggINSatcttgcgcacgttctccgc							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	72371232	72371233	-	C	INS	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	frame_shift_ins	c.315_314	p.I105fs	1.000:1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	57	0	0	34	16	32	-	-	-	C	72371233	-	C	72371232	7	5	157	1	0	1	1	0	0	0	0	0	4187	1164	41	0	1243	0	CYP26B1	2	72371232	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09	33317567	72371232	170828141	27	9262										
SLC4A5	0	genome.wustl.edu	37	chr2	74462323	74462323	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggagaaaacaatggaaaagtCagccaccagggcccggacct	12	11	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	74462323	74462323	C	T	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.2338	p.D780N	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	275	0	0	198	54	21.43	-	-	-	T	74462323	C	T	74462323	3	4	157	1	0	0	0	0	1	0	0	0	14746	826	29	2	1115	2	SLC4A5	2	74462323	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	2091091	74462323	168737050	28	9263										
ITGAV	0	genome.wustl.edu	37	chr2	187511517	187511517	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagtcccatctcaaatccttGaagggcagtgggctgctcga	11	12	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	187511517	187511517	G	A	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	missense	c.1264	p.E422K	0.486	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	193	0	0	90	35	28	-	-	-	A	187511517	G	A	187511517	3	1	157	1	0	0	0	0	1	0	0	0	7942	1291	45	2	1365	2	ITGAV	2	187511517	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	113049194	187511517	55687856	29	9264										
MAP2	0	genome.wustl.edu	37	chr2	210559707	210559707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgacaaagaagcatccgcgcAtatctctggtgacaaatcag	9	10	2	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	210559707	210559707	A	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.2813	p.H938R	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	139	0	0	63	32	33.68	-	-	-	G	210559707	A	G	210559707	3	3	157	1	0	0	0	0	1	0	0	0	9306	217	8	5	2827	5	MAP2	2	210559707	Missense_Mutation	SNP	A	TCGA-A8-A06Q-01A-11W-A050-09	23048190	210559707	32639666	30	9265										
LANCL1	0	genome.wustl.edu	37	chr2	211301071	211301071	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cccatattgccagatcacatCagcacactgataggcatcac	6	14	3	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	211301071	211301071	C	T	SNP	LANCL1	ENST00000233714	human	ensembl	69_37n	-1	known	missense	c.919	p.D307N	0.998	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL1	HGNC	ENSG00000115365	131	0	0	45	24	34.78	-	-	-	T	211301071	C	T	211301071	3	4	157	1	0	0	0	0	1	0	0	0	8674	826	29	2	292	2	LANCL1	2	211301071	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	741364	211301071	31898302	31	9266										
ABCA12	0	genome.wustl.edu	37	chr2	215831644	215831644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caggctgttgaggtaagctgGaagggagtgatagccttctg	16	6	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	215831644	215831644	G	C	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.5812	p.P1938A	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	147	0	0	119	53	30.81	-	-	-	C	215831644	G	C	215831644	3	2	157	1	0	0	0	0	1	0	0	0	30	1174	41	2	2035	2	ABCA12	2	215831644	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4530573	215831644	27367729	32	9267										
UGT1A1	0	genome.wustl.edu	37	chr2	234669446	234669446	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tctctgcccactgtattcttCttgcatgcactgccatgcag	7	14	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	234669446	234669446	C	T	SNP	UGT1A1	ENST00000305208	human	ensembl	69_37n	1	known	silent	c.513	p.F171	0.481	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635	134	0	0	52	19	26.76	-	-	-	T	234669446	C	T	234669446	2	4	157	1	0	0	0	0	0	0	0	1	17041	912	32	2		2	UGT1A1	2	234669446	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	18837802	234669446	8529927	33	9268										
TRPM8	0	genome.wustl.edu	37	chr2	234891970	234891970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccgcacttcagaagcacgcgCgtgaaacggagtccaacata	10	13	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	234891970	234891970	C	T	SNP	TRPM8	ENST00000439148	human	ensembl	69_37n	1	known	missense	c.382	p.R128C	0.000	NULL	pfam_Ion_trans_dom	-	no_start_codon	TRPM8	HGNC	ENSG00000144481	74	0	0	16	8	33.33	-	-	-	T	234891970	C	T	234891970	3	4	157	1	0	0	0	0	1	0	0	0	16688	783	27	1		1	TRPM8	2	234891970	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	222524	234891970	8307403	34	9269										
RBM44	0	genome.wustl.edu	37	chr2	238726892	238726892	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccacaaagaaaacatgctttCacaatataggagaaatgtgt	7	7	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	2	238726892	238726892	C	T	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.1333	p.H445Y	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	34	0	0	35	11	23.4	-	-	-	T	238726892	C	T	238726892	3	4	157	1	0	0	0	0	1	0	0	0	13221	826	29	2	1339	2	RBM44	2	238726892	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	3834922	238726892	4472481	35	9270										
GHRL	0	genome.wustl.edu	37	chr3	10331475	10331475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagttcatcctctgccccttCtgcttgacctccatcttccg	5	18	4	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	10331475	10331475	C	T	SNP	GHRL	ENST00000335542	human	ensembl	69_37n	-1	known	missense	c.196	p.E66K	0.075	pfam_Motilin_assoc	pfam_Motilin_assoc,pfam_Motilin_ghrelin,prints_Preproghrelin	-	no_errors	GHRL	HGNC	ENSG00000157017	193	0	0	70	26	26.8	-	-	-	T	10331475	C	T	10331475	3	4	157	1	0	0	0	0	1	0	0	0	6426	922	32	2	169	2	GHRL	3	10331475	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		10331475	187690955	36	9271										
XPC	0	genome.wustl.edu	37	chr3	14190368	14190368	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tctgtctgccagtagccaaaCaggcccaggtcattttcttc	8	13	4	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	14190368	14190368	C	T	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	silent	c.2196	p.L732	0.997	pfam_Rad4_beta-hairpin_dom2,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	218	0	0	78	18	18.75	-	-	-	T	14190368	C	T	14190368	2	4	157	1	0	0	0	0	0	0	0	1	17538	465	17	4		4	XPC	3	14190368	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	3858893	14190368	183832062	37	9272										
NR2C2	0	genome.wustl.edu	37	chr3	15055260	15055260	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agcgccaagcaactcatattCaccacctcagacaacctcgt	5	16	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	15055260	15055260	C	T	SNP	NR2C2	ENST00000323373	human	ensembl	69_37n	1	known	silent	c.294	p.F98	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463	177	0	0	234	182	43.65	-	-	-	T	15055260	C	T	15055260	2	4	157	1	0	0	0	0	0	0	0	1	10696	825	29	2		2	NR2C2	3	15055260	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	864892	15055260	182967170	38	9273										
PLCL2	0	genome.wustl.edu	37	chr3	17109478	17109478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccatgaacacttgcacagcaTaggcaccaaggaaggtttga	10	10	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	17109478	17109478	T	C	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.2747	p.I916T	0.997	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	81	0	0	50	31	38.27	-	-	-	C	17109478	T	C	17109478	3	2	157	1	0	0	0	0	1	0	0	0	12114	1406	49	5	3137	5	PLCL2	3	17109478	Missense_Mutation	SNP	T	TCGA-A8-A06Q-01A-11W-A050-09	2054218	17109478	180912952	39	9274										
SLC4A7	0	genome.wustl.edu	37	chr3	27424666	27424666	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atattttagggccttgactgGaatttgcaagagacttcccc	9	9	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	27424666	27424666	G	C	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.3568	p.P1190A	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	81	0	0	55	55	50	-	-	-	C	27424666	G	C	27424666	3	2	157	1	0	0	0	0	1	0	0	0	14747	1174	41	2	111	2	SLC4A7	3	27424666	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	10315188	27424666	170597764	40	9275										
TRIM71	0	genome.wustl.edu	37	chr3	32932211	32932211	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagggtaaggtggcctccttCacagtcattggttatgacca	11	10	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	32932211	32932211	C	A	SNP	TRIM71	ENST00000383763	human	ensembl	69_37n	1	known	missense	c.1515	p.F505L	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557	47	0	0	38	6	13.64	-	-	-	A	32932211	C	A	32932211	3	1	157	1	0	0	0	0	1	0	0	0	16640	825	29	2	1529	2	TRIM71	3	32932211	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	5507545	32932211	165090219	41	9276										
TTC21A	0	genome.wustl.edu	37	chr3	39156150	39156150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagatcactgtgacttcaggGagcttcctgccagccctcgt	10	14	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	39156150	39156150	G	A	SNP	TTC21A	ENST00000431559	human	ensembl	69_37n	1	known	missense	c.232	p.E78K	0.000	NULL	NULL	-	no_errors	TTC21A	HGNC	ENSG00000168026	93	0	0	42	13	23.64	-	-	-	A	39156150	G	A	39156150	3	1	157	1	0	0	0	0	1	0	0	0	16784	1161	41	2	655	2	TTC21A	3	39156150	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	6223939	39156150	158866280	42	9277										
RRP9	0	genome.wustl.edu	37	chr3	51969486	51969487	+	Frame_Shift_Ins	INS	-	-	GG													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagccacagcgtcctggtgtINSccgaagctagagggccgggc							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	51969486	51969487	-	GG	INS	RRP9	ENST00000232888	human	ensembl	69_37n	-1	known	frame_shift_ins	c.843_842	p.Q283fs	0.981:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RRP9	HGNC	ENSG00000114767	242	0	0	73	78	51.66	-	-	-	GG	51969487	-	GG	51969486	7	5	157	1	0	1	1	0	0	0	0	0	13777	1654	58	0	608	0	RRP9	3	51969486	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09	12813336	51969486	146052944	43	9278										
CD200R1L	0	genome.wustl.edu	37	chr3	112546390	112546390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tggtttccttggtctcatttGtttctttcttgtaggctttt	8	7	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	112546390	112546390	G	A	SNP	CD200R1L	ENST00000398214	human	ensembl	69_37n	-1	known	missense	c.254	p.T85I	0.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1L	HGNC	ENSG00000206531	330	0	0	299	88	22.68	-	-	-	A	112546390	G	A	112546390	3	1	157	1	0	0	0	0	1	0	0	0	3011	1377	48	4	577	4	CD200R1L	3	112546390	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	60576904	112546390	85476040	44	9279										
CCDC48	0	genome.wustl.edu	37	chr3	128758634	128758634	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagctgttgcggagacagccCtcggcaccagcctctgcagc	12	16	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	128758634	128758634	C	G	SNP	CCDC48	ENST00000436022	human	ensembl	69_37n	1	known	silent	c.429	p.P143	0.000	NULL	NULL	-	no_errors	CCDC48	HGNC	ENSG00000114654	38	0	0	14	13	48.15	-	-	-	G	128758634	C	G	128758634	2	3	157	1	0	0	0	0	0	0	0	1	2846	668	24	4		4	CCDC48	3	128758634	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	16212244	128758634	69263796	45	9280										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0	53	48	45.71	-	-	-	G	178952085	A	G	178952085	3	3	157	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A06Q-01A-11W-A050-09	50193451	178952085	19070345	46	9281										
TNIP2	0	genome.wustl.edu	37	chr4	2747221	2747221	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttttcttcctgcaacttctcAataacactctggacagaggt	6	11	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	2747221	2747221	A	T	SNP	TNIP2	ENST00000315423	human	ensembl	69_37n	-1	known	silent	c.609	p.I203	0.000	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884	194	0	0	88	26	22.61	-	-	-	T	2747221	A	T	2747221	2	4	157	1	0	0	0	0	0	0	0	1	16410	126	5	5		5	TNIP2	4	2747221	Silent	SNP	A	TCGA-A8-A06Q-01A-11W-A050-09		2747221	188407055	47	9282										
ZBTB49	0	genome.wustl.edu	37	chr4	4301738	4301738	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	catgagcagcgaatccaaggCctgctttgtgactgtatgtt	11	9	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	4301738	4301738	C	T	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	silent	c.66	p.G22	0.995	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	194	0	0	172	41	19.07	-	-	-	T	4301738	C	T	4301738	2	4	157	1	0	0	0	0	0	0	0	1	17646	726	26	4		4	ZBTB49	4	4301738	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1554517	4301738	186852538	48	9283										
GBA3	0	genome.wustl.edu	37	chr4	22749339	22749339	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggaaccagcagatcccaactCagtgtctgaccaggaagctg	11	12	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	22749339	22749339	C	T	SNP	GBA3	ENST00000508166	human	ensembl	69_37n	1	known	missense	c.707	p.S236L	0.658	NULL	NULL	-	pseudogene	GBA3	HGNC	ENSG00000249948	199	0	0	127	19	13.01	-	-	-	T	22749339	C	T	22749339	3	4	157	1	0	0	0	0	1	0	0	0	6318	838	29	2	717	2	GBA3	4	22749339	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	18447601	22749339	168404937	49	9284										
FRYL	0	genome.wustl.edu	37	chr4	48597671	48597671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgtcacgaggaaccacacttCgtgagccttttggaaaaagt	10	9	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	48597671	48597671	C	T	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.1184	p.R395Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	78	0	0	106	34	24.29	-	-	-	T	48597671	C	T	48597671	3	4	157	1	0	0	0	0	1	0	0	0	6113	884	31	1	8057	1	FRYL	4	48597671	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	25848332	48597671	142556605	50	9285										
ADAMTS3	0	genome.wustl.edu	37	chr4	73205317	73205317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cgatattgtaatcgttttctCccgcgtgtctgcggcgtctc	10	12	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	73205317	73205317	C	T	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.755	p.G252E	0.994	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	115	0	0	140	47	25.13	-	-	-	T	73205317	C	T	73205317	3	4	157	1	0	0	0	0	1	0	0	0	267	855	30	2	2934	2	ADAMTS3	4	73205317	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	24607646	73205317	117948959	51	9286										
CENPE	0	genome.wustl.edu	37	chr4	104064461	104064461	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cttttgcatatttgatatttCatttgttttctctgaaacaa	4	6	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	104064461	104064461	C	A	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	nonsense	c.5248	p.E1750*	0.996	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	157	0	0	66	46	41.07	-	-	-	A	104064461	C	A	104064461	4	1	157	1	0	0	0	0	0	1	0	0	3259	835	29	2	2921	2	CENPE	4	104064461	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	30859144	104064461	87089815	52	9287										
INTU	0	genome.wustl.edu	37	chr4	128554244	128554244	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gctcagacgagctccctggaGacccctcttcacaagaagaa	9	14	3	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	128554244	128554244	G	A	SNP	INTU	ENST00000335251	human	ensembl	69_37n	1	known	missense	c.55	p.D19N	0.021	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	88	0	0	25	24	48	-	-	-	A	128554244	G	A	128554244	3	1	157	1	0	0	0	0	1	0	0	0	7840	942	33	2	57	2	INTU	4	128554244	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	24489783	128554244	62600032	53	9288										
GYPB	0	genome.wustl.edu	37	chr4	144922404	144922404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgaagtgtgcattgccacctCagtggtacttaatgctgata	10	8	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	144922404	144922404	C	T	SNP	GYPB	ENST00000283126	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	0.020	pfam_Glycophorin	pfam_Glycophorin	-	no_errors	GYPB	HGNC	ENSG00000250361	372	0	0	303	50	14.04	-	-	-	T	144922404	C	T	144922404	3	4	157	1	0	0	0	0	1	0	0	0	6960	835	29	2	221	2	GYPB	4	144922404	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	16368160	144922404	46231872	54	9289										
MAB21L2	0	genome.wustl.edu	37	chr4	151504703	151504703	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gtgcaaatcactccggcgttCaagtgcaccgggatctggcc	12	13	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	151504703	151504703	C	G	SNP	MAB21L2	ENST00000317605	human	ensembl	69_37n	1	known	missense	c.522	p.F174L	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541	91	0	0	10	11	50	-	-	-	G	151504703	C	G	151504703	3	3	157	1	0	0	0	0	1	0	0	0	9209	825	29	2	524	2	MAB21L2	4	151504703	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	6582299	151504703	39649573	55	9290										
MAB21L2	0	genome.wustl.edu	37	chr4	151504936	151504936	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctgccgaaacaagtgcctctCagtgctgaagactctgcggg	12	12	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	151504936	151504936	C	T	SNP	MAB21L2	ENST00000317605	human	ensembl	69_37n	1	known	missense	c.755	p.S252L	1.000	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541	74	0	0	14	12	46.15	-	-	-	T	151504936	C	T	151504936	3	4	157	1	0	0	0	0	1	0	0	0	9209	838	29	2	757	2	MAB21L2	4	151504936	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	233	151504936	39649340	56	9291										
CCDC111	0	genome.wustl.edu	37	chr4	185593491	185593491	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tcacagaaaaggctacagagGaaagctggacatcgaattca	10	8	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	4	185593491	185593491	G	T	SNP	CCDC111	ENST00000314970	human	ensembl	69_37n	1	known	nonsense	c.721	p.E241*	0.003	pfam_DNA_primase_S	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	CCDC111	HGNC	ENSG00000164306	60	0	0	18	11	37.93	-	-	-	T	185593491	G	T	185593491	4	4	157	1	0	0	0	0	0	1	0	0	2773	1175	41	2	739	2	CCDC111	4	185593491	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	34088555	185593491	5560785	57	9292										
SPEF2	0	genome.wustl.edu	37	chr5	35814583	35814583	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	taggatattaaaataattctCcaaaggagtgaacatgtaca	7	5	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	35814583	35814583	C	T	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	silent	c.5397	p.L1799	0.993	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	96	0	0	156	32	17.02	-	-	-	T	35814583	C	T	35814583	2	4	157	1	0	0	0	0	0	0	0	1	15126	842	30	2		2	SPEF2	5	35814583	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		35814583	145100677	58	9293										
PIK3R1	0	genome.wustl.edu	37	chr5	67586647	67586647	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagacttgatgttttatataGaaatggacccaccaggtaat	8	7	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	67586647	67586647	G	C	SNP	PIK3R1	ENST00000336483	human	ensembl	69_37n	1	known	missense	c.91	p.E31Q	1.000	NULL	pfam_SH2,superfamily_Guanylate-bd_C,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	105	0	0	60	14	18.67	-	-	-	C	67586647	G	C	67586647	3	2	157	1	0	0	0	0	1	0	0	0	11992	943	33	2	1053	2	PIK3R1	5	67586647	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	31772064	67586647	113328613	59	9294										
SLC4A9	0	genome.wustl.edu	37	chr5	139743671	139743672	+	Frame_Shift_Ins	INS	-	-	T													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gtttcctgggcacagcagtgINSgctggagctgccttctgcct							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	139743671	139743672	-	T	INS	SLC4A9	ENST00000230993	human	ensembl	69_37n	1	known	frame_shift_ins	c.1359_1360	p.A453fs	0.004:0.006	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	88	0	0	44	26	37.14	-	-	-	T	139743672	-	T	139743671	7	5	157	1	0	1	1	0	0	0	0	0	14749	1335	47	0	1325	0	SLC4A9	5	139743671	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09	72157024	139743671	41171589	60	9295	72	2								
SLC4A9	0	genome.wustl.edu	37	chr5	139743675	139743676	+	Frame_Shift_Ins	INS	-	-	GT													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cctgggcacagcagtggctgINSgagctgccttctgcctgatg							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	139743675	139743676	-	GT	INS	SLC4A9	ENST00000230993	human	ensembl	69_37n	1	known	frame_shift_ins	c.1363_1364	p.A456fs	1.000:1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	91	0	0	45	26	36.62	-	-	-	GT	139743676	-	GT	139743675	7	5	157	1	0	1	1	0	0	0	0	0	14749	1349	47	0	1329	0	SLC4A9	5	139743675	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09	4	139743675	41171585	61	9296	72	2								
PCDHA4	0	genome.wustl.edu	37	chr5	140186860	140186860	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cctgggaggcagggaacggtCagctccactactcggtctcc	13	14	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	140186860	140186860	C	G	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.88	p.Q30E	0.998	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	58	0	0	37	14	27.45	-	-	-	G	140186860	C	G	140186860	3	3	157	1	0	0	0	0	1	0	0	0	11599	827	29	2	90	2	PCDHA4	5	140186860	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	443185	140186860	40728400	62	9297			1	20		4	3	1841	N	C	6.867308e-05
PCDHA4	0	genome.wustl.edu	37	chr5	140187308	140187308	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gagcccaaatgaatacttttCtctggaaaaaccacctgatg	7	10	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	140187308	140187308	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.536	p.S179F	0.033	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	72	0	0	31	7	17.95	-	-	-	T	140187308	C	T	140187308	3	4	157	1	0	0	0	0	1	0	0	0	11599	913	32	2	538	2	PCDHA4	5	140187308	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	448	140187308	40727952	63	9298			1	20		4	3	1841	N	C	6.867308e-05
PCDHA4	0	genome.wustl.edu	37	chr5	140188699	140188699	+	Missense_Mutation	SNP	C	C	G													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccctggacgaaacggacgctCcgcgccaccgcctactggta							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	140188699	140188699	C	G	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.1927	p.P643A	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	83	0	0	61	14	18.67	-	-	-	G	140188699	C	G	140188699	3	3	157	1	0	0	0	0	1	0	0	0	11599	855	30	2	1929	2	PCDHA4	5	140188699	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1391	140188699	40726561	64	9299	73	2	1	20		4	3	1841	N	C	6.867308e-05
PCDHA4	0	genome.wustl.edu	37	chr5	140188700	140188700	+	Missense_Mutation	SNP	C	C	T													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cctggacgaaacggacgctcCgcgccaccgcctactggtac							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	140188700	140188700	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.1928	p.P643L	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	83	0	0	59	14	18.92	-	-	-	T	140188700	C	T	140188700	3	4	157	1	0	0	0	0	1	0	0	0	11599	652	23	1	1930	1	PCDHA4	5	140188700	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1	140188700	40726560	65	9300	73	2	1	20		4	3	1841	N	C	6.867308e-05
CYFIP2	0	genome.wustl.edu	37	chr5	156746888	156746888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cttcgcccaggtgacgctgcGtgagcccctgcggcaggcgg	16	15	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	156746888	156746888	G	A	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.1475	p.R492H	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	196	0	0	93	22	18.97	-	-	-	A	156746888	G	A	156746888	3	1	157	1	0	0	0	0	1	0	0	0	4169	1145	40	1	1525	1	CYFIP2	5	156746888	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	16558188	156746888	24168372	66	9301										
EBF1	0	genome.wustl.edu	37	chr5	158135082	158135082	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cactcttctgtttcacggctGagaccatgttggctggtgag	12	10	3	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	158135082	158135082	G	C	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	nonsense	c.1649	p.S550*	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	300	0	0	165	117	41.34	-	-	-	C	158135082	G	C	158135082	4	2	157	1	0	0	0	0	0	1	0	0	4915	1294	45	2	134	2	EBF1	5	158135082	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	1388194	158135082	22780178	67	9302										
AGXT2L2	0	genome.wustl.edu	37	chr5	177656971	177656971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggaaatagaacacacagagcTgctccggcagggtctctgac	12	11	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	177656971	177656971	T	G	SNP	AGXT2L2	ENST00000308158	human	ensembl	69_37n	-1	known	missense	c.308	p.Q103P	0.869	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L2	HGNC	ENSG00000175309	60	0	0	32	5	13.51	-	-	-	G	177656971	T	G	177656971	3	3	157	1	0	0	0	0	1	0	0	0	407	1580	55	5	1084	5	AGXT2L2	5	177656971	Missense_Mutation	SNP	T	TCGA-A8-A06Q-01A-11W-A050-09	19521889	177656971	3258289	68	9303										
CLK4	0	genome.wustl.edu	37	chr5	178050303	178050303	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tggtttacaatgcctgttctCttgtgtgctactatgagatc	9	8	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	5	178050303	178050303	C	G	SNP	CLK4	ENST00000316308	human	ensembl	69_37n	-1	known	missense	c.115	p.E39Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK4	HGNC	ENSG00000113240	179	0	0	174	22	11.22	-	-	-	G	178050303	C	G	178050303	3	3	157	1	0	0	0	0	1	0	0	0	3569	922	32	2	1378	2	CLK4	5	178050303	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	393332	178050303	2864957	69	9304										
ZNF184	0	genome.wustl.edu	37	chr6	27419990	27419990	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	actaaaagattttccacattCtgcacaatcatagggtttct	5	9	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	27419990	27419990	C	T	SNP	ZNF184	ENST00000211936	human	ensembl	69_37n	-1	known	missense	c.1348	p.E450K	0.508	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654	111	0	0	93	30	24.39	-	-	-	T	27419990	C	T	27419990	3	4	157	1	0	0	0	0	1	0	0	0	17847	922	32	2	911	2	ZNF184	6	27419990	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		27419990	143695077	70	9305										
HIST1H2AJ	0	genome.wustl.edu	37	chr6	27782387	27782387	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tacaccggcgctccagcaccGacccgctccgcatagttgcc	9	19	0	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	27782387	27782387	G	A	SNP	HIST1H2AJ	ENST00000333151	human	ensembl	69_37n	-1	known	silent	c.132	p.V44	0.631	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AJ	HGNC	ENSG00000182611	95	0	0	25	11	30.56	-	-	-	A	27782387	G	A	27782387	2	1	157	1	0	0	0	0	0	0	0	1	7187	1045	37	1		1	HIST1H2AJ	6	27782387	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	362397	27782387	143332680	71	9306										
OR2J2	0	genome.wustl.edu	37	chr6	29141422	29141422	+	Frame_Shift_Del	DEL	A	A	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gaaaaagatgaatgatgattAaaaaaaatgcaagttcggaa							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	29141422	29141422	A	-	DEL	OR2J2	ENST00000377167	human	ensembl	69_37n	1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700	110	0	0	100	26	20.16	-	-	-	-	29141422	A	-	29141422	7	5	157	1	0	1	0	1	0	0	0	0	11076	363	13	0	12	0	OR2J2	6	29141422	Frame_Shift_Del	DEL	A	TCGA-A8-A06Q-01A-11W-A050-09	1359035	29141422	141973645	72	9307										
BTBD9	0	genome.wustl.edu	37	chr6	38548069	38548069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctagcttaatctcgatgccgGaacggcagtcatcatcaatt	8	11	4	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	38548069	38548069	G	A	SNP	BTBD9	ENST00000403056	human	ensembl	69_37n	-1	known	missense	c.959	p.S320F	0.985	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826	142	0	0	96	39	28.89	-	-	-	A	38548069	G	A	38548069	3	1	157	1	0	0	0	0	1	0	0	0	1557	1174	41	2	998	2	BTBD9	6	38548069	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	9406647	38548069	132566998	73	9308										
TMEM63B	0	genome.wustl.edu	37	chr6	44122458	44122458	+	Frame_Shift_Del	DEL	A	A	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gctcaggtgctgcaggactcAgaggtggacggggatgggga							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	44122458	44122458	A	-	DEL	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	frame_shift_del	c.2337	p.E780fs	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	55	0	0	4	11	73.33	-	-	-	-	44122458	A	-	44122458	7	5	157	1	0	1	0	1	0	0	0	0	16286	175	7	0	2427	0	TMEM63B	6	44122458	Frame_Shift_Del	DEL	A	TCGA-A8-A06Q-01A-11W-A050-09	5574389	44122458	126992609	74	9309	74	2								
TMEM63B	0	genome.wustl.edu	37	chr6	44122461	44122461	+	Frame_Shift_Del	DEL	G	G	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caggtgctgcaggactcagaGgtggacggggatggggatgg							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	44122461	44122461	G	-	DEL	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	frame_shift_del	c.2340	p.V781fs	0.960	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	50	0	0	4	11	73.33	-	-	-	-	44122461	G	-	44122461	7	5	157	1	0	1	0	1	0	0	0	0	16286	991	35	0	2430	0	TMEM63B	6	44122461	Frame_Shift_Del	DEL	G	TCGA-A8-A06Q-01A-11W-A050-09	3	44122461	126992606	75	9310	74	2								
PREP	0	genome.wustl.edu	37	chr6	105726196	105726196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atgtactgaagggtggcaatGaacttcagggagtgaagcgg	16	5	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	105726196	105726196	G	C	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	missense	c.1956	p.F652L	1.000	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	250	0	0	20	84	80	-	-	-	C	105726196	G	C	105726196	3	2	157	1	0	0	0	0	1	0	0	0	12555	1281	45	2	180	2	PREP	6	105726196	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	61603735	105726196	65388871	76	9311										
TAAR5	0	genome.wustl.edu	37	chr6	132910300	132910300	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccactggctgagccttgtctCtaccacatctgtgtagagga	10	12	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	6	132910300	132910300	C	G	SNP	TAAR5	ENST00000258034	human	ensembl	69_37n	-1	known	missense	c.526	p.E176Q	0.101	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR5	HGNC	ENSG00000135569	169	0	0	50	93	65.03	-	-	-	G	132910300	C	G	132910300	3	3	157	1	0	0	0	0	1	0	0	0	15583	922	32	2	491	2	TAAR5	6	132910300	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	27184104	132910300	38204767	77	9312										
SCRN1	0	genome.wustl.edu	37	chr7	29963714	29963714	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agctccagcatggtgctcctCagcttgcgaccttgctcctg	10	15	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	29963714	29963714	C	T	SNP	SCRN1	ENST00000434476	human	ensembl	69_37n	-1	known	silent	c.1164	p.L388	0.998	NULL	pfam_Peptidase_C69	-	no_errors	SCRN1	HGNC	ENSG00000136193	49	0	0	38	11	22.45	-	-	-	T	29963714	C	T	29963714	2	4	157	1	0	0	0	0	0	0	0	1	14026	813	29	2		2	SCRN1	7	29963714	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		29963714	129174949	78	9313										
BAZ1B	0	genome.wustl.edu	37	chr7	72891207	72891207	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgaaattttacctttcatttCtctttcctggatttcccgtt	4	10	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	72891207	72891207	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.2584	p.E862K	0.999	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	167	0	0	149	33	18.03	-	-	-	T	72891207	C	T	72891207	3	4	157	1	0	0	0	0	1	0	0	0	1334	922	32	2	1919	2	BAZ1B	7	72891207	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	42927493	72891207	86247456	79	9314										
PCLO	0	genome.wustl.edu	37	chr7	82390716	82390716	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	taaatttgtatgtaatatttCtgcattggagaatttcaact	6	4	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	82390716	82390716	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.15101	p.R5034K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	139	0	0	177	46	20.54	-	-	-	T	82390716	C	T	82390716	3	4	157	1	0	0	0	0	1	0	0	0	11656	913	32	2	339	2	PCLO	7	82390716	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	9499509	82390716	76747947	80	9315										
GRM3	0	genome.wustl.edu	37	chr7	86415715	86415715	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	accaggccaaagccatggctGagatcttgcgcttcttcaac	9	13	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	86415715	86415715	G	C	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.607	p.E203Q	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	113	0	0	50	27	35.06	-	-	-	C	86415715	G	C	86415715	3	2	157	1	0	0	0	0	1	0	0	0	6849	1291	45	2	613	2	GRM3	7	86415715	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4024999	86415715	72722948	81	9316										
CDK14	0	genome.wustl.edu	37	chr7	90492537	90492537	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctaacatagtgctacttcatGacatcatccataccaaggag	6	11	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	90492537	90492537	G	A	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	missense	c.592	p.D198N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	107	0	0	154	34	18.09	-	-	-	A	90492537	G	A	90492537	3	1	157	1	0	0	0	0	1	0	0	0	3159	1290	45	2	556	2	CDK14	7	90492537	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4076822	90492537	68646126	82	9317										
CPSF4	0	genome.wustl.edu	37	chr7	99049996	99049996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gctgctggtgaccagccctcGatttgaactgcccatgggaa	12	12	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	99049996	99049996	G	A	SNP	CPSF4	ENST00000292476	human	ensembl	69_37n	1	known	missense	c.503	p.R168Q	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917	61	0	0	27	29	51.79	-	-	-	A	99049996	G	A	99049996	3	1	157	1	0	0	0	0	1	0	0	0	3858	1058	37	1	525	1	CPSF4	7	99049996	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	8557459	99049996	60088667	83	9318										
PLXNA4	0	genome.wustl.edu	37	chr7	131925880	131925880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcctgagccaaggcactcgcCgcagctctgatactgaccac	10	16	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	131925880	131925880	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.1549	p.G517S	0.997	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	210	1	0.47	102	100	49.02	-	-	-	T	131925880	C	T	131925880	3	4	157	1	0	0	0	0	1	0	0	0	12196	652	23	1	4247	1	PLXNA4	7	131925880	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	32875884	131925880	27212783	84	9319										
LUC7L2	0	genome.wustl.edu	37	chr7	139094321	139094321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tttttaagagagtcgtagctGagaagcaggagaaaagaaac	12	4	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	139094321	139094321	G	A	SNP	LUC7L2	ENST00000541515	human	ensembl	69_37n	1	known	missense	c.898	p.E300K	1.000	pfam_LUC7-rel	pfam_LUC7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000146963	53	0	0	53	24	30.77	-	-	-	A	139094321	G	A	139094321	3	1	157	1	0	0	0	0	1	0	0	0	9149	1291	45	2	726	2	LUC7L2	7	139094321	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	7168441	139094321	20044342	85	9320										
ZNF862	0	genome.wustl.edu	37	chr7	149558908	149558908	+	Frame_Shift_Del	DEL	G	G	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agagcctccgtcaccaggcaGggcccaaagaggaagaattc							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	149558908	149558908	G	-	DEL	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	frame_shift_del	c.2659	p.E890fs	0.975	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	66	0	0	15	13	44.83	-	-	-	-	149558908	G	-	149558908	7	5	157	1	0	1	0	1	0	0	0	0	18288	1000	35	0	2685	0	ZNF862	7	149558908	Frame_Shift_Del	DEL	G	TCGA-A8-A06Q-01A-11W-A050-09	10464587	149558908	9579755	86	9321										
AGAP3	0	genome.wustl.edu	37	chr7	150819866	150819866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aaaggcctttccaactccttCcaaattagaagaccagttgg	7	11	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	7	150819866	150819866	C	T	SNP	AGAP3	ENST00000473312	human	ensembl	69_37n	1	known	missense	c.1183	p.P395S	1.000	NULL	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612	73	0	0	17	7	29.17	-	-	-	T	150819866	C	T	150819866	3	4	157	1	0	0	0	0	1	0	0	0	369	855	30	2	1217	2	AGAP3	7	150819866	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1260958	150819866	8318797	87	9322										
INTS9	0	genome.wustl.edu	37	chr8	28627432	28627432	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagggtctgcacgaactgctCcacagggatggaaccgctca	12	13	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	8	28627432	28627432	C	T	SNP	INTS9	ENST00000517383	human	ensembl	69_37n	-1	novel	nonsense	c.195	p.W65*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS9	HGNC	ENSG00000104299	126	0	0	38	15	28.3	-	-	-	T	28627432	C	T	28627432	4	4	157	1	0	0	0	0	0	1	0	0	7839	864	30	2	210	2	INTS9	8	28627432	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		28627432	117736590	88	9323										
DUSP26	0	genome.wustl.edu	37	chr8	33449726	33449726	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	acagcacaatgcaccaggatCttccctgagaggagagacac	10	12	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	8	33449726	33449726	C	G	SNP	DUSP26	ENST00000256261	human	ensembl	69_37n	-1	known	missense	c.441	p.K147N	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878	88	0	0	28	28	50	-	-	-	G	33449726	C	G	33449726	3	3	157	1	0	0	0	0	1	0	0	0	4858	912	32	2	198	2	DUSP26	8	33449726	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	4822294	33449726	112914296	89	9324										
TGS1	0	genome.wustl.edu	37	chr8	56699303	56699303	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aaaacagaagctgatgacaaGaacgatgaaaaatgcatgaa	9	5	0	6			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	8	56699303	56699303	G	C	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.846	p.K282N	0.060	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	132	0	0	108	20	15.62	-	-	-	C	56699303	G	C	56699303	3	2	157	1	0	0	0	0	1	0	0	0	15932	933	33	2	860	2	TGS1	8	56699303	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	23249577	56699303	89664719	90	9325										
HEATR7A	0	genome.wustl.edu	37	chr8	145245695	145245695	+	Frame_Shift_Del	DEL	C	C	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccggttttgtagctctgcagCgcttcagcgagggtgccctg							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	8	145245695	145245695	C	-	DEL	HEATR7A	ENST00000326134	human	ensembl	69_37n	1	known	frame_shift_del	c.571	p.R191fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR7A	HGNC	ENSG00000179832	42	0	0	20	11	35.48	-	-	-	-	145245695	C	-	145245695	7	5	157	1	0	1	0	1	0	0	0	0	7085	768	27	0	593	0	HEATR7A	8	145245695	Frame_Shift_Del	DEL	C	TCGA-A8-A06Q-01A-11W-A050-09	88546392	145245695	1118327	91	9326										
IFNA13	0	genome.wustl.edu	37	chr9	21367456	21367456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gttattccttcctccttaatCtttcttgcaagtttgttgat	5	9	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	9	21367456	21367456	C	T	SNP	IFNA13	ENST00000449498	human	ensembl	69_37n	-1	known	missense	c.554	p.R185K	0.045	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816	147	0	0	24	19	44.19	-	-	-	T	21367456	C	T	21367456	3	4	157	1	0	0	0	0	1	0	0	0	7587	913	32	2	22	2	IFNA13	9	21367456	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		21367456	119845975	92	9327										
TOPORS	0	genome.wustl.edu	37	chr9	32543678	32543678	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttctacggaaaaattcagctGaaatatccctgtagcggcca	8	10	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	9	32543678	32543678	G	A	SNP	TOPORS	ENST00000360538	human	ensembl	69_37n	-1	known	missense	c.845	p.S282L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579	49	0	0	2	26	92.86	-	-	-	A	32543678	G	A	32543678	3	1	157	1	0	0	0	0	1	0	0	0	16466	1294	45	2	2296	2	TOPORS	9	32543678	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	11176222	32543678	108669753	93	9328										
TLN1	0	genome.wustl.edu	37	chr9	35720063	35720063	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggcatgtgtcctcggtgcatCtggccgctggtaatctgctg	14	11	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	9	35720063	35720063	C	G	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.1437	p.Q479H	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	227	0	0	15	86	85.15	-	-	-	G	35720063	C	G	35720063	3	3	157	1	0	0	0	0	1	0	0	0	16042	912	32	2	6368	2	TLN1	9	35720063	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	3176385	35720063	105493368	94	9329										
SLC44A1	0	genome.wustl.edu	37	chr9	108123558	108123558	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctgagcagcttcagatagctGaagacaatcttcgggccctc	10	12	2	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	9	108123558	108123558	G	C	SNP	SLC44A1	ENST00000374720	human	ensembl	69_37n	1	known	missense	c.847	p.E283Q	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	125	0	0	50	15	23.08	-	-	-	C	108123558	G	C	108123558	3	2	157	1	0	0	0	0	1	0	0	0	14724	1291	45	2	877	2	SLC44A1	9	108123558	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	72403495	108123558	33089873	95	9330										
SVEP1	0	genome.wustl.edu	37	chr9	113168448	113168448	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccatgatcttacctgagtttCacttcactttcataggtgtg	7	10	4	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	9	113168448	113168448	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.9432	p.V3144	0.853	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	48	0	0	4	20	80	-	-	-	T	113168448	C	T	113168448	2	4	157	1	0	0	0	0	0	0	0	1	15511	813	29	2		2	SVEP1	9	113168448	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	5044890	113168448	28044983	96	9331										
FAM171A1	0	genome.wustl.edu	37	chr10	15255199	15255199	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gtcccacattcgctaccactCtgttccacgtcatccaggta	6	16	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	15255199	15255199	C	G	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.2388	p.Q796H	0.526	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	59	0	0	26	10	27.78	-	-	-	G	15255199	C	G	15255199	3	3	157	1	0	0	0	0	1	0	0	0	5530	912	32	2	288	2	FAM171A1	10	15255199	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		15255199	120279548	97	9332										
FAM171A1	0	genome.wustl.edu	37	chr10	15255691	15255691	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gacaggggctggggctggatCtgtgaggacgggtgtgggaa	22	5	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	15255691	15255691	C	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.1896	p.Q632H	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	96	0	0	50	14	21.88	-	-	-	A	15255691	C	A	15255691	3	1	157	1	0	0	0	0	1	0	0	0	5530	912	32	2	780	2	FAM171A1	10	15255691	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	492	15255691	120279056	98	9333										
MLLT10	0	genome.wustl.edu	37	chr10	21962492	21962492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	taccttaattggcctcccttCaacctcagctgttacttcac	4	15	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	21962492	21962492	C	T	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.1265	p.S422L	0.997	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	171	0	0	149	107	41.8	-	-	-	T	21962492	C	T	21962492	3	4	157	1	0	0	0	0	1	0	0	0	9697	838	29	2	1303	2	MLLT10	10	21962492	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	6706801	21962492	113572255	99	9334										
SPAG6	0	genome.wustl.edu	37	chr10	22678164	22678164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggtcctgcaaagggaacacaCggctgcctggcatcatgatg	13	11	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	22678164	22678164	C	T	SNP	SPAG6	ENST00000376603	human	ensembl	69_37n	1	known	missense	c.1156	p.R386W	0.127	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	199	0	0	129	115	46.94	-	-	-	T	22678164	C	T	22678164	3	4	157	1	0	0	0	0	1	0	0	0	15073	527	19	1	954	1	SPAG6	10	22678164	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	715672	22678164	112856583	100	9335										
ZEB1	0	genome.wustl.edu	37	chr10	31815999	31815999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agaatgtgaaaaaccacaagGggatgaggaagaggaggagg	17	3	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	31815999	31815999	G	A	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.3185	p.G1062E	0.970	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	802	0	0	494	366	42.51	-	-	-	A	31815999	G	A	31815999	3	1	157	1	0	0	0	0	1	0	0	0	17719	1232	43	4	3230	4	ZEB1	10	31815999	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	9137835	31815999	103718748	101	9336										
KIAA1279	0	genome.wustl.edu	37	chr10	70776092	70776092	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccgcccaggaaatagaagttGagctagaacttagtaaagag	11	7	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	70776092	70776092	G	C	SNP	KIAA1279	ENST00000361983	human	ensembl	69_37n	1	known	missense	c.1786	p.E596Q	1.000	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	140	0	0	67	51	43.22	-	-	-	C	70776092	G	C	70776092	3	2	157	1	0	0	0	0	1	0	0	0	8273	1291	45	2	1812	2	KIAA1279	10	70776092	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	38960093	70776092	64758655	102	9337										
TM9SF3	0	genome.wustl.edu	37	chr10	98311022	98311022	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tcagtatataaatcttctatCattgcaacaataataacgat	3	7	4	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	10	98311022	98311022	C	T	SNP	TM9SF3	ENST00000371142	human	ensembl	69_37n	-1	known	missense	c.939	p.M313I	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	225	1	0.44	114	56	32.75	-	-	-	T	98311022	C	T	98311022	3	4	157	1	0	0	0	0	1	0	0	0	16074	826	29	2	866	2	TM9SF3	10	98311022	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	27534930	98311022	37223725	103	9338										
DNHD1	0	genome.wustl.edu	37	chr11	6585612	6585612	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tggagataccctcctatgttCagctgccatcatctacctgg	8	13	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	6585612	6585612	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.10334	p.S3445L	1.000	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	195	0	0	53	35	39.77	-	-	-	T	6585612	C	T	6585612	3	4	157	1	0	0	0	0	1	0	0	0	4703	838	29	2	10461	2	DNHD1	11	6585612	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		6585612	128420904	104	9339										
SCUBE2	0	genome.wustl.edu	37	chr11	9088307	9088307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcagctgcactctgggccatCggctgtatcgtcacaggagt	13	12	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	9088307	9088307	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	69_37n	-1	known	missense	c.697	p.D233N	0.044	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	101	0	0	45	12	21.05	-	-	-	T	9088307	C	T	9088307	3	4	157	1	0	0	0	0	1	0	0	0	14033	884	31	1	2461	1	SCUBE2	11	9088307	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	2502695	9088307	125918209	105	9340										
INSC	0	genome.wustl.edu	37	chr11	15170708	15170708	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgcaagcaggctttgctgcaGattgggatcaacatgatggc	13	8	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	15170708	15170708	G	A	SNP	INSC	ENST00000379554	human	ensembl	69_37n	1	known	silent	c.129	p.Q43	0.999	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487	23	0	0	14	13	48.15	-	-	-	A	15170708	G	A	15170708	2	1	157	1	0	0	0	0	0	0	0	1	7818	933	33	2		2	INSC	11	15170708	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	6082401	15170708	119835808	106	9341										
ABTB2	0	genome.wustl.edu	37	chr11	34182470	34182470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tttgctggtcttgaggatgtCgaacatgagctgcaagccct	12	9	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	34182470	34182470	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	missense	c.2377	p.D793N	0.888	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	36	0	0	13	5	27.78	-	-	-	T	34182470	C	T	34182470	3	4	157	1	0	0	0	0	1	0	0	0	103	884	31	1	728	1	ABTB2	11	34182470	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	19011762	34182470	100824046	107	9342										
CHST1	0	genome.wustl.edu	37	chr11	45671732	45671732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccagagccggtacgtgtcgcGgaaggtctcgctgcgcgaag	16	12	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	45671732	45671732	G	A	SNP	CHST1	ENST00000308064	human	ensembl	69_37n	-1	known	missense	c.742	p.R248C	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264	53	0	0	25	6	19.35	-	-	-	A	45671732	G	A	45671732	3	1	157	1	0	0	0	0	1	0	0	0	3426	1116	39	1	497	1	CHST1	11	45671732	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	11489262	45671732	89334784	108	9343										
DAK	0	genome.wustl.edu	37	chr11	61111640	61111640	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agcggatggcgctggtgctgGaacgggtgtgcagcactctc	17	10	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	61111640	61111640	G	C	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	missense	c.1135	p.E379Q	0.963	superfamily_Dak2,tigrfam_DhaK_ATP	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	50	0	0	17	6	26.09	-	-	-	C	61111640	G	C	61111640	3	2	157	1	0	0	0	0	1	0	0	0	4260	1175	41	2	1181	2	DAK	11	61111640	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	15439908	61111640	73894876	109	9344										
ZBTB3	0	genome.wustl.edu	37	chr11	62520830	62520830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	attcatgtgcaagtagctggCagctgccagcacatcctcca	9	13	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	62520830	62520830	C	T	SNP	ZBTB3	ENST00000394807	human	ensembl	69_37n	-1	known	missense	c.457	p.A153T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	61	0	0	25	12	32.43	-	-	-	T	62520830	C	T	62520830	3	4	157	1	0	0	0	0	1	0	0	0	17630	710	25	4	1271	4	ZBTB3	11	62520830	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1409190	62520830	72485686	110	9345										
PACS1	0	genome.wustl.edu	37	chr11	66006688	66006688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctccagctcgggcctgagccGagacgccacggccacccctc	11	20	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	66006688	66006688	G	A	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	missense	c.2369	p.R790Q	1.000	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	159	0	0	92	11	10.68	-	-	-	A	66006688	G	A	66006688	3	1	157	1	0	0	0	0	1	0	0	0	11445	1058	37	1	2451	1	PACS1	11	66006688	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3485858	66006688	68999828	111	9346										
DPP3	0	genome.wustl.edu	37	chr11	66264824	66264824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cttgctggaggctggcgaggGactcgttaccatcactccca	12	13	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	66264824	66264824	G	A	SNP	DPP3	ENST00000360510	human	ensembl	69_37n	1	known	missense	c.1754	p.G585E	1.000	pirsf_Pept_49_dipeptidyl-pept-3_euk	pirsf_Pept_49_dipeptidyl-pept-3_euk	-	no_errors	DPP3	HGNC	ENSG00000254986	51	0	0	12	30	71.43	-	-	-	A	66264824	G	A	66264824	3	1	157	1	0	0	0	0	1	0	0	0	4763	1174	41	2	1812	2	DPP3	11	66264824	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	258136	66264824	68741692	112	9347										
RPS6KB2	0	genome.wustl.edu	37	chr11	67202530	67202530	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cggagcccacggagctacctCtacctccactcctgccaccg	8	20	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	67202530	67202530	C	G	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	missense	c.1339	p.L447V	0.870	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	23	0	0	4	11	73.33	-	-	-	G	67202530	C	G	67202530	3	3	157	1	0	0	0	0	1	0	0	0	13743	912	32	2	1397	2	RPS6KB2	11	67202530	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	937706	67202530	67803986	113	9348										
SHANK2	0	genome.wustl.edu	37	chr11	70805676	70805676	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aggtgagctccaccatttttGagagctttgatgacctccac	9	11	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	70805676	70805676	G	C	SNP	SHANK2	ENST00000458632	human	ensembl	69_37n	-1	novel	nonsense	c.59	p.S20*	0.995	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SHANK2	HGNC	ENSG00000162105	136	0	0	68	45	39.82	-	-	-	C	70805676	G	C	70805676	4	2	157	1	0	0	0	0	0	1	0	0	14354	1277	45	2	4868	2	SHANK2	11	70805676	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3603146	70805676	64200840	114	9349										
PAAF1	0	genome.wustl.edu	37	chr11	73611344	73611344	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gaaggacatgtgtttgatgtGaattgttgcaggtttttccc	12	5	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	73611344	73611344	G	A	SNP	PAAF1	ENST00000310571	human	ensembl	69_37n	1	known	silent	c.411	p.V137	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAAF1	HGNC	ENSG00000175575	239	0	0	162	37	18.59	-	-	-	A	73611344	G	A	73611344	2	1	157	1	0	0	0	0	0	0	0	1	11435	1277	45	2		2	PAAF1	11	73611344	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2805668	73611344	61395172	115	9350										
ANGPTL5	0	genome.wustl.edu	37	chr11	101777891	101777891	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tttaacatcacatgattcctCacagtcttccttacaaacag	3	12	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	101777891	101777891	C	T	SNP	ANGPTL5	ENST00000334289	human	ensembl	69_37n	-1	known	missense	c.184	p.E62K	0.297	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL5	HGNC	ENSG00000187151	129	0	0	34	50	59.52	-	-	-	T	101777891	C	T	101777891	3	4	157	1	0	0	0	0	1	0	0	0	617	835	29	2	1010	2	ANGPTL5	11	101777891	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	28166547	101777891	33228625	116	9351										
GRIA4	0	genome.wustl.edu	37	chr11	105781241	105781241	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aatgacacagctgctattgaGaacagaacagtggttgtaac	10	7	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	105781241	105781241	G	C	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.1239	p.E413D	0.998	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	150	0	0	39	70	64.22	-	-	-	C	105781241	G	C	105781241	3	2	157	1	0	0	0	0	1	0	0	0	6821	933	33	2	1273	2	GRIA4	11	105781241	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4003350	105781241	29225275	117	9352										
ZBTB16	0	genome.wustl.edu	37	chr11	113935256	113935256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agtgcagcgtgtgtggggtcGagcttcctgataacgaggct	16	8	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	113935256	113935256	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	69_37n	1	known	missense	c.1234	p.E412K	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	102	0	0	6	13	68.42	-	-	-	A	113935256	G	A	113935256	3	1	157	1	0	0	0	0	1	0	0	0	17622	1059	37	1	1236	1	ZBTB16	11	113935256	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	8154015	113935256	21071260	118	9353										
SIK3	0	genome.wustl.edu	37	chr11	116730052	116730052	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccatagctgagggtggccatCaggttggtacggtgctgcat	15	9	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	116730052	116730052	C	T	SNP	SIK3	ENST00000445177	human	ensembl	69_37n	-1	novel	missense	c.2674	p.D892N	0.976	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIK3	HGNC	ENSG00000160584	127	0	0	17	36	67.92	-	-	-	T	116730052	C	T	116730052	3	4	157	1	0	0	0	0	1	0	0	0	14408	813	29	2	1435	2	SIK3	11	116730052	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	2794796	116730052	18276464	119	9354										
C11orf45	0	genome.wustl.edu	37	chr11	128773376	128773376	+	Frame_Shift_Del	DEL	T	T	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aattccagagtgaggaggtgTtaccctcactcctgacagag							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	11	128773376	128773376	T	-	DEL	C11orf45	ENST00000310799	human	ensembl	69_37n	-1	known	frame_shift_del	c.167	p.N56fs	0.000	NULL	NULL	-	no_errors	C11orf45	HGNC	ENSG00000174370	70	0	0	16	2	11.11	-	-	-	-	128773376	T	-	128773376	7	5	157	1	0	1	0	1	0	0	0	0	1653	1725	60	0	278	0	C11orf45	11	128773376	Frame_Shift_Del	DEL	T	TCGA-A8-A06Q-01A-11W-A050-09	12043324	128773376	6233140	120	9355										
CACNA1C	0	genome.wustl.edu	37	chr12	2705075	2705075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccaccgcattgtcaatgacaCgatcttcaccaacctgatcc	5	16	3	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	2705075	2705075	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.2699	p.T900M	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	135	0	0	56	31	35.63	-	-	-	T	2705075	C	T	2705075	3	4	157	1	0	0	0	0	1	0	0	0	2565	536	19	1	2885	1	CACNA1C	12	2705075	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		2705075	131146820	121	9356										
CD4	0	genome.wustl.edu	37	chr12	6923397	6923397	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tcatcaagaatcttaagataGaagactcagatacttacatc	5	8	4	5			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	6923397	6923397	G	A	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	0.000	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	562	0	0	263	50	15.82	-	-	-	A	6923397	G	A	6923397	3	1	157	1	0	0	0	0	1	0	0	0	3043	943	33	2	314	2	CD4	12	6923397	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4218322	6923397	126928498	122	9357										
GPRC5A	0	genome.wustl.edu	37	chr12	13065406	13065406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcctccccaaaaggaattctCcatcccacgggcccacgctt	7	18	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	13065406	13065406	C	A	SNP	GPRC5A	ENST00000014914	human	ensembl	69_37n	1	known	missense	c.1007	p.S336Y	1.000	NULL	pfam_GPCR_3_C	-	no_errors	GPRC5A	HGNC	ENSG00000013588	123	0	0	110	17	13.39	-	-	-	A	13065406	C	A	13065406	3	1	157	1	0	0	0	0	1	0	0	0	6775	855	30	2	1017	2	GPRC5A	12	13065406	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	6142009	13065406	120786489	123	9358										
ITPR2	0	genome.wustl.edu	37	chr12	26551828	26551828	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccacagatgaaacaagttgtCtttagaatttcttctttttt	5	7	3	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	26551828	26551828	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.7677	p.K2559	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	193	0	0	210	60	22.22	-	-	-	T	26551828	C	T	26551828	2	4	157	1	0	0	0	0	0	0	0	1	7975	912	32	2		2	ITPR2	12	26551828	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	13486422	26551828	107300067	124	9359										
ITPR2	0	genome.wustl.edu	37	chr12	26568266	26568266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	agttcggtttttcagcctatCaacttccatagtgaagtcat	7	9	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	26568266	26568266	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.7276	p.D2426N	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	155	0	0	120	46	27.71	-	-	-	T	26568266	C	T	26568266	3	4	157	1	0	0	0	0	1	0	0	0	7975	826	29	2	857	2	ITPR2	12	26568266	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	16438	26568266	107283629	125	9360										
REP15	0	genome.wustl.edu	37	chr12	27850132	27850132	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aagattgtgtgttcatcaaaGagctgctcagaaattgtctg	10	6	4	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	27850132	27850132	G	T	SNP	REP15	ENST00000310791	human	ensembl	69_37n	1	known	nonsense	c.637	p.E213*	0.998	NULL	NULL	-	no_errors	REP15	HGNC	ENSG00000174236	144	0	0	98	36	26.87	-	-	-	T	27850132	G	T	27850132	4	4	157	1	0	0	0	0	0	1	0	0	13309	943	33	2	639	2	REP15	12	27850132	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	1281866	27850132	106001763	126	9361										
CCDC91	0	genome.wustl.edu	37	chr12	28603099	28603099	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tatcattccttgtagcatcaGaggctccttgaaatgctaga	8	9	2	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	28603099	28603099	G	C	SNP	CCDC91	ENST00000381259	human	ensembl	69_37n	1	known	missense	c.768	p.Q256H	1.000	NULL	NULL	-	no_errors	CCDC91	HGNC	ENSG00000123106	53	0	0	26	14	35	-	-	-	C	28603099	G	C	28603099	3	2	157	1	0	0	0	0	1	0	0	0	2897	933	33	2	798	2	CCDC91	12	28603099	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	752967	28603099	105248796	127	9362										
EIF4B	0	genome.wustl.edu	37	chr12	53413733	53413733	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cacgtgaacccagcaatccaGagaggttgaaaggttttggt	12	8	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	53413733	53413733	G	C	SNP	EIF4B	ENST00000262056	human	ensembl	69_37n	1	known	missense	c.400	p.E134Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4B	HGNC	ENSG00000063046	185	0	0	118	15	11.28	-	-	-	C	53413733	G	C	53413733	3	2	157	1	0	0	0	0	1	0	0	0	5064	943	33	2	414	2	EIF4B	12	53413733	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	24810634	53413733	80438162	128	9363										
SRGAP1	0	genome.wustl.edu	37	chr12	64488742	64488742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aggttattcccctcattgtgGaaagctgtattcggttcatc	9	9	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	64488742	64488742	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.1570	p.E524K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	106	0	0	106	36	25.35	-	-	-	A	64488742	G	A	64488742	3	1	157	1	0	0	0	0	1	0	0	0	15236	1175	41	2	1620	2	SRGAP1	12	64488742	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	11075009	64488742	69363153	129	9364										
KIAA1033	0	genome.wustl.edu	37	chr12	105531752	105531752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aaagccaatgaccaaaacctCagttaaggcattgtgcaggc	9	10	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	105531752	105531752	C	T	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.1415	p.S472L	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	70	0	0	114	26	18.44	-	-	-	T	105531752	C	T	105531752	3	4	157	1	0	0	0	0	1	0	0	0	8258	838	29	2	1473	2	KIAA1033	12	105531752	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	41043010	105531752	28320143	130	9365										
CORO1C	0	genome.wustl.edu	37	chr12	109072151	109072151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggccacatactgtagggtaaGatttgtcaattcgaccagtc	10	9	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	109072151	109072151	G	C	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	missense	c.374	p.S125C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	310	0	0	414	124	22.92	-	-	-	C	109072151	G	C	109072151	3	2	157	1	0	0	0	0	1	0	0	0	3785	942	33	2	1245	2	CORO1C	12	109072151	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3540399	109072151	24779744	131	9366										
ANAPC7	0	genome.wustl.edu	37	chr12	110819687	110819687	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcttgaacactattactgttCagctgaatggccttggctcc	9	11	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	110819687	110819687	C	T	SNP	ANAPC7	ENST00000455511	human	ensembl	69_37n	-1	known	silent	c.1104	p.L368	0.997	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510	116	0	0	48	17	26.15	-	-	-	T	110819687	C	T	110819687	2	4	157	1	0	0	0	0	0	0	0	1	606	813	29	2		2	ANAPC7	12	110819687	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1747536	110819687	23032208	132	9367										
P2RX2	0	genome.wustl.edu	37	chr12	133198305	133198305	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gtgtacgccgagccacccctCaggtagctggcctgtgaccc	12	16	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	12	133198305	133198305	C	T	SNP	P2RX2	ENST00000343948	human	ensembl	69_37n	1	known	missense	c.1241	p.S414L	0.003	NULL	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	53	0	0	15	4	21.05	-	-	-	T	133198305	C	T	133198305	3	4	157	1	0	0	0	0	1	0	0	0	11413	838	29	2	1279	2	P2RX2	12	133198305	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	22378618	133198305	653590	133	9368										
PARP4	0	genome.wustl.edu	37	chr13	25064849	25064849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttttctaaccctgagaaattCttcagtattctgttcaacat	4	9	5	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	25064849	25064849	C	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.1171	p.E391K	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	154	0	0	128	64	33.33	-	-	-	T	25064849	C	T	25064849	3	4	157	1	0	0	0	0	1	0	0	0	11536	922	32	2	4103	2	PARP4	13	25064849	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		25064849	90105029	134	9369										
PABPC3	0	genome.wustl.edu	37	chr13	25671591	25671591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	accatgctgcatactatcctCctagccaaattgctcgacta	5	14	0	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	25671591	25671591	C	G	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	missense	c.1255	p.P419A	0.982	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	262	0	0	146	25	14.62	-	-	-	G	25671591	C	G	25671591	3	3	157	1	0	0	0	0	1	0	0	0	11438	855	30	2	1257	2	PABPC3	13	25671591	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	606742	25671591	89498287	135	9370										
CSNK1A1L	0	genome.wustl.edu	37	chr13	37678900	37678900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gttgcctggtcctgttgtctCtgtactttttggccaaacca	9	11	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	37678900	37678900	C	T	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	missense	c.494	p.R165K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	252	0	0	139	33	18.97	-	-	-	T	37678900	C	T	37678900	3	4	157	1	0	0	0	0	1	0	0	0	3983	913	32	2	523	2	CSNK1A1L	13	37678900	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	12007309	37678900	77490978	136	9371										
RCBTB2	0	genome.wustl.edu	37	chr13	49086299	49086299	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgcccagagttattataaccCcaggcaaatacctgtttaaa	6	10	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	49086299	49086299	C	G	SNP	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	missense	c.543	p.W181C	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	168	0	0	73	28	27.45	-	-	-	G	49086299	C	G	49086299	3	3	157	1	0	0	0	0	1	0	0	0	13255	624	22	4	1159	4	RCBTB2	13	49086299	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	11407399	49086299	66083579	137	9372										
CLN5	0	genome.wustl.edu	37	chr13	77574712	77574712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagagacatggtttgattccTacgactgttccaaatttgtg	9	8	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	77574712	77574712	T	C	SNP	CLN5	ENST00000377453	human	ensembl	69_37n	1	known	missense	c.832	p.Y278H	1.000	NULL	NULL	-	no_errors	CLN5	HGNC	ENSG00000102805	111	0	0	65	24	26.97	-	-	-	C	77574712	T	C	77574712	3	2	157	1	0	0	0	0	1	0	0	0	3574	1522	53	5	846	5	CLN5	13	77574712	Missense_Mutation	SNP	T	TCGA-A8-A06Q-01A-11W-A050-09	28488413	77574712	37595166	138	9373										
MYCBP2	0	genome.wustl.edu	37	chr13	77651360	77651360	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggccacactggctgaaatctGgccagctatttttgtgcttt	10	10	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	13	77651360	77651360	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	nonsense	c.11647	p.Q3883*	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	186	0	0	97	36	27.07	-	-	-	A	77651360	G	A	77651360	4	1	157	1	0	0	0	0	0	1	0	0	10090	1357	47	4	2457	4	MYCBP2	13	77651360	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	76648	77651360	37518518	139	9374										
OR4K14	0	genome.wustl.edu	37	chr14	20483041	20483041	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gccccaccagtaaagtgcaaGaagaagatttgagccataca	9	10	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	14	20483041	20483041	G	T	SNP	OR4K14	ENST00000305045	human	ensembl	69_37n	-1	known	missense	c.312	p.F104L	0.846	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K14	HGNC	ENSG00000169484	94	0	0	69	10	12.66	-	-	-	T	20483041	G	T	20483041	3	4	157	1	0	0	0	0	1	0	0	0	11142	933	33	2	623	2	OR4K14	14	20483041	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		20483041	86866499	140	9375										
NIN	0	genome.wustl.edu	37	chr14	51223742	51223742	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccgctggaccacgctttcctGaagcttctcaatcttgcctt	7	15	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	14	51223742	51223742	G	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	nonsense	c.4006	p.Q1336*	0.607	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	199	1	0.5	119	23	16.2	-	-	-	A	51223742	G	A	51223742	4	1	157	1	0	0	0	0	0	1	0	0	10489	1299	45	2	2599	2	NIN	14	51223742	Nonsense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	30740701	51223742	56125798	141	9376										
FAM161B	0	genome.wustl.edu	37	chr14	74412991	74412991	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggagctgcagtgccttacctCagagcctgcgggcactggac	14	13	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	14	74412991	74412991	C	T	SNP	FAM161B	ENST00000286544	human	ensembl	69_37n	-1	known	silent	c.561	p.L187	0.006	NULL	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050	112	0	0	33	18	35.29	-	-	-	T	74412991	C	T	74412991	2	4	157	1	0	0	0	0	0	0	0	1	5513	813	29	2		2	FAM161B	14	74412991	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	23189249	74412991	32936549	142	9377										
COQ6	0	genome.wustl.edu	37	chr14	74424951	74424951	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gggttcatattaccctaggtGatggcagcaccttccagacc	10	12	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	14	74424951	74424951	G	T	SNP	COQ6	ENST00000334571	human	ensembl	69_37n	1	known	missense	c.583	p.D195Y	1.000	pfam_mOase_FAD-bd,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723	106	0	0	43	13	23.21	-	-	-	T	74424951	G	T	74424951	3	4	157	1	0	0	0	0	1	0	0	0	3779	1290	45	2	601	2	COQ6	14	74424951	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	11960	74424951	32924589	143	9378										
LTK	0	genome.wustl.edu	37	chr15	41797650	41797650	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttcatgtcccctccagacatCagttccagcagaatgaggcg	9	13	2	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	41797650	41797650	C	T	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	silent	c.1776	p.L592	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	92	0	0	34	14	29.17	-	-	-	T	41797650	C	T	41797650	2	4	157	1	0	0	0	0	0	0	0	1	9146	813	29	2		2	LTK	15	41797650	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		41797650	60733742	144	9379										
FBN1	0	genome.wustl.edu	37	chr15	48787333	48787333	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctcttaccaacttggcatagGgtgcacgggcttccccacgc	10	15	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	48787333	48787333	G	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.2664	p.T888	0.008	pfam_TB_dom,superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	101	0	0	59	23	27.71	-	-	-	T	48787333	G	T	48787333	2	4	157	1	0	0	0	0	0	0	0	1	5748	1219	43	4		4	FBN1	15	48787333	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	6989683	48787333	53744059	145	9380										
MYO5A	0	genome.wustl.edu	37	chr15	52662392	52662392	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgtttcttgtttgtatcgatCtgcatgttcctcaatgcatt	7	8	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	52662392	52662392	C	G	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.3040	p.D1014H	0.985	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	244	0	0	91	97	51.6	-	-	-	G	52662392	C	G	52662392	3	3	157	1	0	0	0	0	1	0	0	0	10150	913	32	2	2607	2	MYO5A	15	52662392	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	3875059	52662392	49869000	146	9381										
NARG2	0	genome.wustl.edu	37	chr15	60741569	60741569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	accatcagcatgtaatatatCtatagtcatatcatttttat	3	7	4	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	60741569	60741569	C	G	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	missense	c.1597	p.D533H	0.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	70	0	0	66	16	19.51	-	-	-	G	60741569	C	G	60741569	3	3	157	1	0	0	0	0	1	0	0	0	10241	913	32	2	1379	2	NARG2	15	60741569	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	8079177	60741569	41789823	147	9382										
C15orf39	0	genome.wustl.edu	37	chr15	75498915	75498915	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagctgacccaccctgctctCtggccccagctcctagcaag	8	19	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	75498915	75498915	C	T	SNP	C15orf39	ENST00000565074	human	ensembl	69_37n	1	known	missense	c.131	p.S44F	0.004	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C15orf39	HGNC	ENSG00000167173	68	0	0	30	9	23.08	-	-	-	T	75498915	C	T	75498915	3	4	157	1	0	0	0	0	1	0	0	0	1805	912	32	2	528	2	C15orf39	15	75498915	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	14757346	75498915	27032477	148	9383										
CHD2	0	genome.wustl.edu	37	chr15	93499827	93499827	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgattacggggacccctcttCagaattccctcaaagagctc	8	13	3	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	15	93499827	93499827	C	T	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	nonsense	c.1948	p.Q650*	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	204	0	0	102	26	20.16	-	-	-	T	93499827	C	T	93499827	4	4	157	1	0	0	0	0	0	1	0	0	3354	827	29	2	2010	2	CHD2	15	93499827	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	18000912	93499827	9031565	149	9384										
NLRC3	0	genome.wustl.edu	37	chr16	3592723	3592723	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gagacttgagtttaccttcaGagcatttgccagggctttgg	12	8	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	16	3592723	3592723	G	C	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	missense	c.3130	p.L1044V	0.984	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	105	0	0	54	15	21.74	-	-	-	C	3592723	G	C	3592723	3	2	157	1	0	0	0	0	1	0	0	0	10540	933	33	2	217	2	NLRC3	16	3592723	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		3592723	86762030	150	9385										
ALDOA	0	genome.wustl.edu	37	chr16	30080238	30080238	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gattggggaacacaccccctCagccctcgccatcatggaaa	9	15	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	16	30080238	30080238	C	T	SNP	ALDOA	ENST00000338110	human	ensembl	69_37n	1	known	missense	c.479	p.S160L	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	109	0	0	50	11	18.03	-	-	-	T	30080238	C	T	30080238	3	4	157	1	0	0	0	0	1	0	0	0	507	838	29	2	493	2	ALDOA	16	30080238	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	26487515	30080238	60274515	151	9386										
ARMC5	0	genome.wustl.edu	37	chr16	31471049	31471049	+	Frame_Shift_Del	DEL	C	C	-													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cgggcacgcggcgggctccgCcccctactcgcgctgctacg							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	16	31471049	31471049	C	-	DEL	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	frame_shift_del	c.489	p.L165fs	1.000	NULL	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	25	0	0	4	2	33.33	-	-	-	-	31471049	C	-	31471049	7	5	157	1	0	1	0	1	0	0	0	0	958	726	26	0	206	0	ARMC5	16	31471049	Frame_Shift_Del	DEL	C	TCGA-A8-A06Q-01A-11W-A050-09	1390811	31471049	58883704	152	9387										
BRD7	0	genome.wustl.edu	37	chr16	50357560	50357560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	taaaacatccagtaaactatCtgccatgacatacggataat	5	9	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	16	50357560	50357560	C	T	SNP	BRD7	ENST00000394689	human	ensembl	69_37n	-1	known	missense	c.1381	p.D461N	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	217	0	0	41	106	72.11	-	-	-	T	50357560	C	T	50357560	3	4	157	1	0	0	0	0	1	0	0	0	1513	913	32	2	601	2	BRD7	16	50357560	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	18886511	50357560	39997193	153	9388										
KIAA0182	0	genome.wustl.edu	37	chr16	85699765	85699765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caggctgagcgaggcccctgGaggcaaaaagagtctgagca	15	10	1	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	16	85699765	85699765	G	A	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	missense	c.2942	p.G981E	0.012	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	24	0	0	1	9	90	-	-	-	A	85699765	G	A	85699765	3	1	157	1	0	0	0	0	1	0	0	0	8211	1174	41	2	2992	2	KIAA0182	16	85699765	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	35342205	85699765	4654988	154	9389										
TIMM22	0	genome.wustl.edu	37	chr17	904307	904307	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tttgctgctttctctgctgcGattgattattacctccggtg	9	10	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	904307	904307	G	C	SNP	TIMM22	ENST00000327158	human	ensembl	69_37n	1	known	silent	c.564	p.A188	0.970	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370	122	0	0	56	25	30.86	-	-	-	C	904307	G	C	904307	2	2	157	1	0	0	0	0	0	0	0	1	16005	1045	37	3		3	TIMM22	17	904307	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		904307	80290903	155	9390										
ABR	0	genome.wustl.edu	37	chr17	962030	962030	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aacgggattgtgggggagttGagcagcagcaggaactcatt	16	6	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	962030	962030	G	C	SNP	ABR	ENST00000574544	human	ensembl	69_37n	-1	putative	missense	c.259	p.Q87E	1.000	pfam_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABR	HGNC	ENSG00000159842	228	0	0	125	16	11.35	-	-	-	C	962030	G	C	962030	3	2	157	1	0	0	0	0	1	0	0	0	99	1277	45	2	1371	2	ABR	17	962030	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	57723	962030	80233180	156	9391										
TP53	0	genome.wustl.edu	37	chr17	7577568	7577568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cgcccatgcaggaactgttaCacatgtagttgtagtggatg	12	8	0	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	7577568	7577568	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.713	p.C238Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	232	0	0	23	76	76.77	-	-	-	T	7577568	C	T	7577568	3	4	157	1	0	0	0	0	1	0	0	0	16477	478	17	4	577	4	TP53	17	7577568	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	6615538	7577568	73617642	157	9392										
DNAH2	0	genome.wustl.edu	37	chr17	7734627	7734627	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctggaggccagacccgggaaGagaaggtaaaaagagccggg	17	8	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	7734627	7734627	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.12454	p.E4152Q	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	74	0	0	18	10	35.71	-	-	-	C	7734627	G	C	7734627	3	2	157	1	0	0	0	0	1	0	0	0	4638	943	33	2	12768	2	DNAH2	17	7734627	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	157059	7734627	73460583	158	9393										
TRPV2	0	genome.wustl.edu	37	chr17	16327010	16327010	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cccgcctctgccctaccgtgCagcttgaggacatccgcaac	9	18	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	16327010	16327010	C	T	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	nonsense	c.853	p.Q285*	0.557	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	100	0	0	43	14	24.56	-	-	-	T	16327010	C	T	16327010	4	4	157	1	0	0	0	0	0	1	0	0	16692	711	25	4	867	4	TRPV2	17	16327010	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	8592383	16327010	64868200	159	9394										
SEZ6	0	genome.wustl.edu	37	chr17	27308921	27308921	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gggtggtggttgagcagcttCaaggtgggggctgttgtgac	20	5	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	27308921	27308921	C	T	SNP	SEZ6	ENST00000317338	human	ensembl	69_37n	-1	known	silent	c.192	p.L64	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015	211	0	0	54	18	25	-	-	-	T	27308921	C	T	27308921	2	4	157	1	0	0	0	0	0	0	0	1	14230	825	29	2		2	SEZ6	17	27308921	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	10981911	27308921	53886289	160	9395										
KRT222	0	genome.wustl.edu	37	chr17	38816288	38816288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ataagttgctatttcttgttCcagcctcatcttcgtgttga	7	9	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	38816288	38816288	C	T	SNP	KRT222	ENST00000394052	human	ensembl	69_37n	-1	known	missense	c.397	p.E133K	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424	306	0	0	27	99	78.57	-	-	-	T	38816288	C	T	38816288	3	4	157	1	0	0	0	0	1	0	0	0	8512	864	30	2	506	2	KRT222	17	38816288	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	11507367	38816288	42378922	161	9396										
SNF8	0	genome.wustl.edu	37	chr17	47022045	47022045	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggccttcttcctgctcacctCtgcaagtttcttcttggcga	8	14	5	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	47022045	47022045	C	G	SNP	SNF8	ENST00000502492	human	ensembl	69_37n	-1	known	missense	c.52	p.E18Q	1.000	pfam_EAP30,pirsf_ESCRT-2_cplx_Snf8	pfam_EAP30,pirsf_ESCRT-2_cplx_Snf8	-	no_errors	SNF8	HGNC	ENSG00000159210	49	0	0	36	5	12.2	-	-	-	G	47022045	C	G	47022045	3	3	157	1	0	0	0	0	1	0	0	0	14935	922	32	2	756	2	SNF8	17	47022045	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	8205757	47022045	34173165	162	9397										
ABCA8	0	genome.wustl.edu	37	chr17	66891114	66891114	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tccacttctaaagctatgttCtggtgctccacagactgtat	7	11	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	17	66891114	66891114	C	T	SNP	ABCA8	ENST00000589533	human	ensembl	69_37n	-1	known	missense	c.1747	p.E583K	0.970	NULL	pfam_ABC_transporter-like,pfam_Ribosome_biogen_GTPase_RsgA,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon	ABCA8	HGNC	ENSG00000141338	170	0	0	98	36	26.47	-	-	-	T	66891114	C	T	66891114	3	4	157	1	0	0	0	0	1	0	0	0	38	912	32	2	2136	2	ABCA8	17	66891114	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	19869069	66891114	14304096	163	9398										
NDUFV2	0	genome.wustl.edu	37	chr18	9122601	9122601	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gaaagccagttggaaagtatCacattcaggtctgcactact	9	9	3	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	18	9122601	9122601	C	G	SNP	NDUFV2	ENST00000318388	human	ensembl	69_37n	1	known	missense	c.391	p.H131D	1.000	pfam_NADH_UbQ_OxRdtase_24kDa_su,superfamily_Thioredoxin-like_fold,tigrfam_NADH_UbQ_OxRdtase_24kDa_su	pfam_NADH_UbQ_OxRdtase_24kDa_su,superfamily_Thioredoxin-like_fold,tigrfam_NADH_UbQ_OxRdtase_24kDa_su	-	no_errors	NDUFV2	HGNC	ENSG00000178127	134	1	0.74	65	27	29.35	-	-	-	G	9122601	C	G	9122601	3	3	157	1	0	0	0	0	1	0	0	0	10372	826	29	2	409	2	NDUFV2	18	9122601	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		9122601	68954647	164	9399										
CEP192	0	genome.wustl.edu	37	chr18	13099581	13099581	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	actgtgacgatggacagaagGtacttttaaaagtggtttgg	13	4	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	18	13099581	13099581	G	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	splice_site	c.6663+1	e36+1	1.000	-	-	-	no_errors	CEP192	HGNC	ENSG00000101639	256	0	0	164	28	14.58	-	-	-	A	13099581	G	A	13099581	5	1	157	1	0	0	0	0	0	0	1	0	3280	1275	44	4	6806	4	CEP192	18	13099581	Splice_Site	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3976980	13099581	64977667	165	9400										
SETBP1	0	genome.wustl.edu	37	chr18	42533287	42533287	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcaaggagagaagttcttatGactcctccatgtctccaggt	10	10	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	18	42533287	42533287	G	A	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.3982	p.D1328N	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	225	0	0	143	36	20.11	-	-	-	A	42533287	G	A	42533287	3	1	157	1	0	0	0	0	1	0	0	0	14217	1290	45	2	4185	2	SETBP1	18	42533287	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	29433706	42533287	35543961	166	9401										
CNDP2	0	genome.wustl.edu	37	chr18	72178246	72178246	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcatttgctactttttcatcGaggtacagtgccaagctgta	9	9	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	18	72178246	72178246	G	C	SNP	CNDP2	ENST00000324262	human	ensembl	69_37n	1	known	missense	c.655	p.E219Q	1.000	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313	120	0	0	40	5	11.11	-	-	-	C	72178246	G	C	72178246	3	2	157	1	0	0	0	0	1	0	0	0	3624	1059	37	3	673	3	CNDP2	18	72178246	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	29644959	72178246	5899002	167	9402										
TSHZ1	0	genome.wustl.edu	37	chr18	72998610	72998610	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gcccgcaaggcgcagatcctCaagtgcatggagtgtggcag	15	11	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	18	72998610	72998610	C	G	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	silent	c.1248	p.L416	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	141	0	0	30	15	33.33	-	-	-	G	72998610	C	G	72998610	2	3	157	1	0	0	0	0	0	0	0	1	16719	813	29	2		2	TSHZ1	18	72998610	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	820364	72998610	5078638	168	9403										
ELANE	0	genome.wustl.edu	37	chr19	853386	853386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	accccgtaaacttgctcaacGacatcgtgattctccaggtg	8	13	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	853386	853386	G	A	SNP	ELANE	ENST00000263621	human	ensembl	69_37n	1	known	missense	c.349	p.D117N	0.978	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ELANE	HGNC	ENSG00000197561	15	0	0	6	4	40	-	-	-	A	853386	G	A	853386	3	1	157	1	0	0	0	0	1	0	0	0	5085	1058	37	1	359	1	ELANE	19	853386	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		853386	58275597	169	9404										
RPL36	0	genome.wustl.edu	37	chr19	5691557	5691557	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tggcaggtggggacgcacatCcgcgccaagaggaagcggga	18	10	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	5691557	5691557	C	G	SNP	RPL36	ENST00000347512	human	ensembl	69_37n	1	known	missense	c.243	p.I81M	1.000	pfam_Ribosomal_L36e	pfam_Ribosomal_L36e	-	no_errors	RPL36	HGNC	ENSG00000130255	33	0	0	3	10	76.92	-	-	-	G	5691557	C	G	5691557	3	3	157	1	0	0	0	0	1	0	0	0	13672	845	30	2	253	2	RPL36	19	5691557	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	4838171	5691557	53437426	170	9405										
SH2D3A	0	genome.wustl.edu	37	chr19	6754088	6754088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ccctcatccagagcccgcatCagcggcttcagctcctgctc	8	19	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	6754088	6754088	C	T	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	silent	c.1359	p.L453	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	74	0	0	44	11	20	-	-	-	T	6754088	C	T	6754088	2	4	157	1	0	0	0	0	0	0	0	1	14321	813	29	2		2	SH2D3A	19	6754088	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1062531	6754088	52374895	171	9406										
CLEC4M	0	genome.wustl.edu	37	chr19	7832457	7832457	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cttctcctggatgggactttCagacctaaatcaggaaggca	10	10	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	7832457	7832457	C	G	SNP	CLEC4M	ENST00000327325	human	ensembl	69_37n	1	known	nonsense	c.992	p.S331*	0.007	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4M	HGNC	ENSG00000104938	285	0	0	150	21	12.21	-	-	-	G	7832457	C	G	7832457	4	3	157	1	0	0	0	0	0	1	0	0	3548	838	29	2	1035	2	CLEC4M	19	7832457	Nonsense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	1078369	7832457	51296526	172	9407										
ELL	0	genome.wustl.edu	37	chr19	18576723	18576723	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagtcaggctgggggatggaGatgtgctgcgtggaggggga	22	5	1	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	18576723	18576723	G	C	SNP	ELL	ENST00000262809	human	ensembl	69_37n	-1	known	missense	c.189	p.I63M	0.965	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656	57	0	0	9	7	41.18	-	-	-	C	18576723	G	C	18576723	3	2	157	1	0	0	0	0	1	0	0	0	5099	932	33	2	1716	2	ELL	19	18576723	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	10744266	18576723	40552260	173	9408										
ZNF492	0	genome.wustl.edu	37	chr19	22847909	22847909	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gagagaaaccctacaagtgtGaagaatgtggcaaagccttt	11	7	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	22847909	22847909	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	missense	c.1438	p.E480K	0.151	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	61	0	0	38	23	37.7	-	-	-	A	22847909	G	A	22847909	3	1	157	1	0	0	0	0	1	0	0	0	18039	1291	45	2	1448	2	ZNF492	19	22847909	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4271186	22847909	36281074	174	9409										
ZNF536	0	genome.wustl.edu	37	chr19	31039333	31039334	+	Frame_Shift_Ins	INS	-	-	C													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttgaagaaggagaaggacatINSgaaggacaaagccctggctg							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	31039333	31039334	-	C	INS	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	frame_shift_ins	c.2807_2808	p.M936fs	0.055:0.880	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	60	0	0	22	9	29.03	-	-	-	C	31039334	-	C	31039333	7	5	157	1	0	1	1	0	0	0	0	0	18070	1464	51	0	2817	0	ZNF536	19	31039333	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09	8191424	31039333	28089650	175	9410										
GPATCH1	0	genome.wustl.edu	37	chr19	33602733	33602733	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctgtacgcatcttcccattcGaccttgtcctccaggttcac	6	16	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	33602733	33602733	G	A	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	silent	c.1689	p.S563	0.481	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	56	0	0	20	32	61.54	-	-	-	A	33602733	G	A	33602733	2	1	157	1	0	0	0	0	0	0	0	1	6640	1045	37	1		1	GPATCH1	19	33602733	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2563400	33602733	25526250	176	9411										
RBM42	0	genome.wustl.edu	37	chr19	36124592	36124592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tctcctcttacccacaggaaGagccagcagcaccccgagag	9	16	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	36124592	36124592	G	C	SNP	RBM42	ENST00000262633	human	ensembl	69_37n	1	known	missense	c.688	p.E230Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254	130	0	0	33	13	28.26	-	-	-	C	36124592	G	C	36124592	3	2	157	1	0	0	0	0	1	0	0	0	13219	943	33	2	714	2	RBM42	19	36124592	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2521859	36124592	23004391	177	9412										
SIPA1L3	0	genome.wustl.edu	37	chr19	38655162	38655162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttccagcagcaacaccctctCcagcaacgcatccagcagcc	6	19	1	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	38655162	38655162	C	G	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.3824	p.S1275C	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	81	0	0	21	13	38.24	-	-	-	G	38655162	C	G	38655162	3	3	157	1	0	0	0	0	1	0	0	0	14420	855	30	2	3874	2	SIPA1L3	19	38655162	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	2530570	38655162	20473821	178	9413										
LYPD5	0	genome.wustl.edu	37	chr19	44302730	44302730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	acaggcgtagcactcggcgcCgctgagcgtcggcgggtcgg	18	13	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	44302730	44302730	C	T	SNP	LYPD5	ENST00000377950	human	ensembl	69_37n	-1	known	missense	c.394	p.G132S	1.000	NULL	pfam_LY6_UPAR	-	no_errors	LYPD5	HGNC	ENSG00000159871	158	0	0	61	25	28.74	-	-	-	T	44302730	C	T	44302730	3	4	157	1	0	0	0	0	1	0	0	0	9180	652	23	1	369	1	LYPD5	19	44302730	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	5647568	44302730	14826253	179	9414										
SPIB	0	genome.wustl.edu	37	chr19	50931497	50931497	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	cagaagctggcgcgcgccctCcgaaactacgccaagaccgg	12	16	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	50931497	50931497	C	A	SNP	SPIB	ENST00000270632	human	ensembl	69_37n	1	known	silent	c.693	p.L231	1.000	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	SPIB	HGNC	ENSG00000142539	46	0	0	14	8	36.36	-	-	-	A	50931497	C	A	50931497	2	1	157	1	0	0	0	0	0	0	0	1	15141	842	30	2		2	SPIB	19	50931497	Silent	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	6628767	50931497	8197486	180	9415										
ZNF534	0	genome.wustl.edu	37	chr19	52942228	52942228	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgtggcaaggtcttccgtcaGaattcacaccttgcacaaca	8	12	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	52942228	52942228	G	A	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	silent	c.1554	p.Q518	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	146	0	0	69	42	37.84	-	-	-	A	52942228	G	A	52942228	2	1	157	1	0	0	0	0	0	0	0	1	18069	933	33	2		2	ZNF534	19	52942228	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2010731	52942228	6186755	181	9416										
ZNF805	0	genome.wustl.edu	37	chr19	57764450	57764450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atttctttcaggtgacaaagGaaaacccaagagcacagaac	8	9	2	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	57764450	57764450	G	A	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	missense	c.263	p.G88E	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	154	0	0	40	68	61.82	-	-	-	A	57764450	G	A	57764450	3	1	157	1	0	0	0	0	1	0	0	0	18265	1174	41	2	277	2	ZNF805	19	57764450	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	4822222	57764450	1364533	182	9417										
ZNF549	0	genome.wustl.edu	37	chr19	58050005	58050005	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tcagccaccaaaaaagacttCttgagcaccagaaagttcac	6	12	3	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	19	58050005	58050005	C	G	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.1633	p.L545V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	158	0	0	81	14	14.74	-	-	-	G	58050005	C	G	58050005	3	3	157	1	0	0	0	0	1	0	0	0	18077	913	32	2	1604	2	ZNF549	19	58050005	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	285555	58050005	1078978	183	9418										
ERGIC3	0	genome.wustl.edu	37	chr20	34136356	34136357	+	Frame_Shift_Ins	INS	-	-	A													0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgagcagtgccggcgagaggINSgcttcagccagaagatgcag							TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	20	34136356	34136357	-	A	INS	ERGIC3	ENST00000447986	human	ensembl	69_37n	1	known	frame_shift_ins	c.556_557	p.G186fs	1.000:1.000	pfam_DUF1692	pfam_DUF1692	-	no_errors	ERGIC3	HGNC	ENSG00000125991	104	0	0	90	49	35.25	-	-	-	A	34136357	-	A	34136356	7	5	157	1	0	1	1	0	0	0	0	0	5262	1232	43	0	578	0	ERGIC3	20	34136356	Frame_Shift_Ins	INS	-	TCGA-A8-A06Q-01A-11W-A050-09		34136356	28889164	184	9419										
EPB41L1	0	genome.wustl.edu	37	chr20	34807721	34807721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctcaccagcacctacggcgcCactgcggaaaccctctcaac	7	19	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	20	34807721	34807721	C	T	SNP	EPB41L1	ENST00000451082	human	ensembl	69_37n	1	novel	missense	c.677	p.P226L	1.000	pfam_Band_4.1_C	pfam_Band_4.1_C,pfam_SAB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPB41L1	HGNC	ENSG00000088367	302	0	0	133	97	42.17	-	-	-	T	34807721	C	T	34807721	3	4	157	1	0	0	0	0	1	0	0	0	5189	581	21	4	2464	4	EPB41L1	20	34807721	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	671365	34807721	28217799	185	9420										
DLGAP4	0	genome.wustl.edu	37	chr20	35128690	35128690	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	actcaagctgtaagtcatctGagaggagcctcccggactgt	11	11	3	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	20	35128690	35128690	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.2188	p.E730K	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	98	0	0	44	44	50	-	-	-	A	35128690	G	A	35128690	3	1	157	1	0	0	0	0	1	0	0	0	4598	1291	45	2	2337	2	DLGAP4	20	35128690	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	320969	35128690	27896830	186	9421										
TRMT2A	0	genome.wustl.edu	37	chr22	20102205	20102205	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	aggccctcctggctaggagtCtttctgtgggcgaaggtgca	15	10	2	0			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	22	20102205	20102205	C	G	SNP	TRMT2A	ENST00000492988	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	TRMT2A	HGNC	ENSG00000099899	40	0	0	14	8	36.36	-	-	-	G	20102205	C	G	20102205	5	3	157	1	0	0	0	0	0	0	1	0	16661	912	32	2	776	2	TRMT2A	22	20102205	Splice_Site	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09		20102205	31202361	187	9422										
RAB36	0	genome.wustl.edu	37	chr22	23503156	23503156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggagaggcagagcagtgcccGgctccaggtcggcaatggag	18	10	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	22	23503156	23503156	G	A	SNP	RAB36	ENST00000263116	human	ensembl	69_37n	1	known	missense	c.908	p.R303Q	0.004	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228	34	0	0	6	11	64.71	-	-	-	A	23503156	G	A	23503156	3	1	157	1	0	0	0	0	1	0	0	0	13009	1116	39	1	946	1	RAB36	22	23503156	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3400951	23503156	27801410	188	9423										
OSBP2	0	genome.wustl.edu	37	chr22	31289974	31289974	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tcagccaagctgctgtggaaGaagtacccgctgccgtgagt	13	11	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	22	31289974	31289974	G	A	SNP	OSBP2	ENST00000431368	human	ensembl	69_37n	1	novel	missense	c.1376	p.R459K	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OSBP2	HGNC	ENSG00000184792	59	0	0	14	25	64.1	-	-	-	A	31289974	G	A	31289974	3	1	157	1	0	0	0	0	1	0	0	0	11347	933	33	2	2407	2	OSBP2	22	31289974	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	7786818	31289974	20014592	189	9424										
MEI1	0	genome.wustl.edu	37	chr22	42174744	42174744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	taccattgctgctgagcctcCtctccctgatgcagctcagg	9	15	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	22	42174744	42174744	C	T	SNP	MEI1	ENST00000401548	human	ensembl	69_37n	1	known	missense	c.2743	p.L915F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	108	0	0	26	10	27.78	-	-	-	T	42174744	C	T	42174744	3	4	157	1	0	0	0	0	1	0	0	0	9536	681	24	4	2829	4	MEI1	22	42174744	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	10884770	42174744	9129822	190	9425										
OFD1	0	genome.wustl.edu	37	chrX	13785326	13785326	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgaaagaacgaaggcagagaGaagaaagaaggcagagtaac	14	4	0	7			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	13785326	13785326	G	C	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.2680	p.E894Q	0.914	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	577	0	0	906	133	12.75	-	-	-	C	13785326	G	C	13785326	3	2	157	1	0	0	0	0	1	0	0	0	10911	943	33	2	2758	2	OFD1	23	13785326	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09		13785326	141485234	191	9426										
FAM47C	0	genome.wustl.edu	37	chrX	37026644	37026644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ctgggtatttgtgacggaggGcatggacgacttccgctacg	15	9	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	37026644	37026644	G	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.161	p.G54V	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	301	0	0	119	56	32	-	-	-	T	37026644	G	T	37026644	3	4	157	1	0	0	0	0	1	0	0	0	5617	1203	42	4	163	4	FAM47C	23	37026644	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	23241318	37026644	118243916	192	9427										
IQSEC2	0	genome.wustl.edu	37	chrX	53276287	53276287	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gggttccggaactggcgcacGagggctgggttacagacaca	16	10	0	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	53276287	53276287	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	silent	c.2613	p.L871	0.580	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	199	1	0.5	74	21	22.11	-	-	-	A	53276287	G	A	53276287	2	1	157	1	0	0	0	0	0	0	0	1	7872	1045	37	1		1	IQSEC2	23	53276287	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	16249643	53276287	101994273	193	9428										
SPIN2A	0	genome.wustl.edu	37	chrX	57162736	57162736	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	caaaaccctttcatctctgtGaagttccagtccatagacac	5	13	2	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	57162736	57162736	G	A	SNP	SPIN2A	ENST00000374906	human	ensembl	69_37n	-1	known	missense	c.295	p.H99Y	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN2A	HGNC	ENSG00000147059	74	0	0	61	22	26.51	-	-	-	A	57162736	G	A	57162736	3	1	157	1	0	0	0	0	1	0	0	0	15144	1290	45	2	485	2	SPIN2A	23	57162736	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	3886449	57162736	98107824	194	9429										
ITGB1BP2	0	genome.wustl.edu	37	chrX	70524437	70524437	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gtaaccgtgtgttccaagcaCagatgaagctctggggggta	14	8	1	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	70524437	70524437	C	A	SNP	ITGB1BP2	ENST00000373829	human	ensembl	69_37n	1	known	missense	c.799	p.Q267K	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	ITGB1BP2	HGNC	ENSG00000147166	341	0	0	200	80	28.47	-	-	-	A	70524437	C	A	70524437	3	1	157	1	0	0	0	0	1	0	0	0	7946	479	17	4	837	4	ITGB1BP2	23	70524437	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	13361701	70524437	84746123	195	9430										
NHSL2	0	genome.wustl.edu	37	chrX	71358848	71358848	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	tgaccagtgggacctcgaggCtggagacaggccccggtggg	18	11	0	2			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	71358848	71358848	C	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.1450	p.L484M	0.990	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	79	0	0	21	9	30	-	-	-	A	71358848	C	A	71358848	3	1	157	1	0	0	0	0	1	0	0	0	10484	796	28	4	1472	4	NHSL2	23	71358848	Missense_Mutation	SNP	C	TCGA-A8-A06Q-01A-11W-A050-09	834411	71358848	83911712	196	9431										
DIAPH2	0	genome.wustl.edu	37	chrX	96369847	96369847	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	actcttgcctgtgaagaactGaagaaaagtgaaagctttaa	9	6	1	5			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	96369847	96369847	G	A	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	silent	c.2472	p.L824	0.996	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	98	0	0	88	18	16.67	-	-	-	A	96369847	G	A	96369847	2	1	157	1	0	0	0	0	0	0	0	1	4555	1277	45	2		2	DIAPH2	23	96369847	Silent	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	25010999	96369847	58900713	197	9432										
PLS3	0	genome.wustl.edu	37	chrX	114868366	114868366	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	gatgaaagagcaatcaacaaGaagaaacttacacccttcat	6	9	2	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	114868366	114868366	G	C	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.555	p.K185N	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	166	0	0	106	37	25.87	-	-	-	C	114868366	G	C	114868366	3	2	157	1	0	0	0	0	1	0	0	0	12182	933	33	2	573	2	PLS3	23	114868366	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	18498519	114868366	40402194	198	9433										
PLS3	0	genome.wustl.edu	37	chrX	114869259	114869259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	atgttgtgaacattggtgcaGaagatttgagggctgggaaa	15	3	0	4			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	114869259	114869259	G	A	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.649	p.E217K	0.987	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	195	0	0	121	42	25.77	-	-	-	A	114869259	G	A	114869259	3	1	157	1	0	0	0	0	1	0	0	0	12182	943	33	2	671	2	PLS3	23	114869259	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	893	114869259	40401301	199	9434										
DOCK11	0	genome.wustl.edu	37	chrX	117752671	117752671	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ttttgataaaacatgcatttGacacaagataccagcacaag	6	8	0	3			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	117752671	117752671	G	A	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.3451	p.D1151N	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	51	0	0	44	23	33.82	-	-	-	A	117752671	G	A	117752671	3	1	157	1	0	0	0	0	1	0	0	0	4721	1290	45	2	3573	2	DOCK11	23	117752671	Missense_Mutation	SNP	G	TCGA-A8-A06Q-01A-11W-A050-09	2883412	117752671	37517889	200	9435										
SAGE1	0	genome.wustl.edu	37	chrX	134994976	134994976	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.52020202020202	103	1.25602362459038e-40	4.22433886149709	5.20628469468676	3.75588763832403	0.00697335067908563	0.110864388372411	79	ggtttaaaaaagttgtcttaAttcagcaactcgagaaggcg	10	6	2	1			TCGA-A8-A06Q-01A-11W-A050-09	TCGA-A8-A06Q-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	473d5422-978a-48be-be32-2b7516d6d2d5	c66176ec-6088-430c-a3f3-3c03ba2b5b1a	X	134994976	134994976	A	T	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.2635	p.I879F	0.985	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	54	0	0	34	19	35.85	-	-	-	T	134994976	A	T	134994976	3	4	157	1	0	0	0	0	1	0	0	0	13895	101	4	5	2709	5	SAGE1	23	134994976	Missense_Mutation	SNP	A	TCGA-A8-A06Q-01A-11W-A050-09	17242305	134994976	20275584	201	9436										
GPR52	0	genome.wustl.edu	37	chr1	174417939	174417939	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ttccacattttcaaaatttgCcgtcagcacaccaaagagat	5	11	2	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	174417939	174417939	C	A	SNP	GPR52	ENST00000367685	human	ensembl	69_37n	1	known	nonsense	c.690	p.C230*	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737	306	0	0	208	127	37.8	-	-	-	A	174417939	C	A	174417939	4	1	158	1	0	0	0	0	0	1	0	0	6748	747	26	4	692	4	GPR52	1	174417939	Nonsense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		174417939	74832682	1	9437										
TPR	0	genome.wustl.edu	37	chr1	186287865	186287865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tatctgcctttgatccctacCtggggctgctacttgtagtg	10	11	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	186287865	186287865	C	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.6664	p.V2222M	0.995	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	126	0	0	112	38	25.33	-	-	-	T	186287865	C	T	186287865	3	4	158	1	0	0	0	0	1	0	0	0	16512	695	24	4	447	4	TPR	1	186287865	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	11869926	186287865	62962756	2	9438										
NRXN1	0	genome.wustl.edu	37	chr2	50850528	50850528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	cattcacaggctccactagtGcttcaaaggcccctgatccc	7	16	2	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	50850528	50850528	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.1058	p.A353V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	155	0	0	207	45	17.86	-	-	-	A	50850528	G	A	50850528	3	1	158	1	0	0	0	0	1	0	0	0	10738	1319	46	4	3821	4	NRXN1	2	50850528	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09		50850528	192348845	3	9439										
NEB	0	genome.wustl.edu	37	chr2	152375530	152375532	+	In_Frame_Del	DEL	CTT	CTT	-													0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tgattcatgatcagagactcCttcatgtcagtcacgggttt							TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	152375530	152375532	CTT	-	DEL	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	in_frame_del	c.22644_22642	p.K7548in_frame_del	0.987:1.000:1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	54	0	0	251	159	38.78	-	-	-	-	152375532	CTT	-	152375530	7	5	158	1	0	1	0	1	0	0	0	0	10374	680	24	0	3045	0	NEB	2	152375530	In_Frame_Del	DEL	CTT	TCGA-A8-A06R-01A-11D-A015-09	101525002	152375530	90823843	4	9440										
BARD1	0	genome.wustl.edu	37	chr2	215657118	215657118	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ttcaagtcttgtatccaggcCggggtgtaacacactggaca	11	10	2	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	215657118	215657118	C	T	SNP	BARD1	ENST00000260947	human	ensembl	69_37n	-1	known	silent	c.267	p.P89	1.000	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376	128	0	0	176	65	26.97	-	-	-	T	215657118	C	T	215657118	2	4	158	1	0	0	0	0	0	0	0	1	1316	639	23	1		1	BARD1	2	215657118	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	63281588	215657118	27542255	5	9441										
LRRN1	0	genome.wustl.edu	37	chr3	3888104	3888104	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	cagccttccacagattatgaAgtgtgtctcacagtgtccaa	8	11	1	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	3888104	3888104	A	C	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	missense	c.1779	p.E593D	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	288	0	0	193	77	28.52	-	-	-	C	3888104	A	C	3888104	3	2	158	1	0	0	0	0	1	0	0	0	9100	69	3	5	1781	5	LRRN1	3	3888104	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09		3888104	194134326	6	9442										
RBM5	0	genome.wustl.edu	37	chr3	50154522	50154522	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tgtagatgaaataccgagacCgagctgcagaaagacgggag	14	7	0	5			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	50154522	50154522	C	T	SNP	RBM5	ENST00000347869	human	ensembl	69_37n	1	known	nonsense	c.2110	p.R704*	0.996	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	42	0	0	157	82	34.31	-	-	-	T	50154522	C	T	50154522	4	4	158	1	0	0	0	0	0	1	0	0	13226	644	23	1	2196	1	RBM5	3	50154522	Nonsense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	46266418	50154522	147867908	7	9443										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	74	0	0	123	89	41.98	-	-	-	A	178936091	G	A	178936091	3	1	158	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	128781569	178936091	19086339	8	9444										
WHSC1	0	genome.wustl.edu	37	chr4	1920229	1920229	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tcaaaagacggcagaggctgAccccagaagaggagtagggt	15	8	1	5			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	4	1920229	1920229	A	G	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	missense	c.1289	p.D430G	0.278	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_superfamily,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_PWWP,smart_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_superfamily	-	no_errors	WHSC1	HGNC	ENSG00000109685	37	0	0	73	26	25.74	-	-	-	G	1920229	A	G	1920229	3	3	158	1	0	0	0	0	1	0	0	0	17459	275	10	5	1303	5	WHSC1	4	1920229	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09		1920229	189234047	9	9445										
PRLR	0	genome.wustl.edu	37	chr5	35086314	35086314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gaagggaacttcttacccttCcctgtggtaagtcagtgaat	10	9	2	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	35086314	35086314	C	T	SNP	PRLR	ENST00000382002	human	ensembl	69_37n	-1	known	missense	c.199	p.E67K	1.000	pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PRLR	HGNC	ENSG00000113494	185	0	0	91	76	45.24	-	-	-	T	35086314	C	T	35086314	3	4	158	1	0	0	0	0	1	0	0	0	12612	864	30	2	1697	2	PRLR	5	35086314	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		35086314	145828946	10	9446										
SNCAIP	0	genome.wustl.edu	37	chr5	121758575	121758575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aaaaacagtttctagctctaGctggaattgtggcatctcaa	8	8	3	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	121758575	121758575	G	C	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.284	p.S95T	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	121	0	0	34	52	60.47	-	-	-	C	121758575	G	C	121758575	3	2	158	1	0	0	0	0	1	0	0	0	14930	971	34	4	153	4	SNCAIP	5	121758575	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	86672261	121758575	59156685	11	9447										
FBXL21	0	genome.wustl.edu	37	chr5	135273118	135273118	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aaaattgtctgtctaggttgAcagtagcgctgagtcagcag	12	7	3	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	135273118	135273118	A	T	SNP	FBXL21	ENST00000297158	human	ensembl	69_37n	1	known	missense	c.371	p.D124V	1.000	NULL	NULL	-	pseudogene	FBXL21	HGNC	ENSG00000164616	47	0	0	132	22	14.29	-	-	-	T	135273118	A	T	135273118	3	4	158	1	0	0	0	0	1	0	0	0	5764	275	10	5	377	5	FBXL21	5	135273118	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09	13514543	135273118	45642142	12	9448										
RBM27	0	genome.wustl.edu	37	chr5	145641353	145641353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gtctgctccttcaacagtgcAcggaggtatccagaaggtaa	11	10	2	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	145641353	145641353	A	G	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.2174	p.H725R	0.944	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	120	0	0	28	20	40.82	-	-	-	G	145641353	A	G	145641353	3	3	158	1	0	0	0	0	1	0	0	0	13210	159	6	5	2224	5	RBM27	5	145641353	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09	10368235	145641353	35273907	13	9449										
FAM71B	0	genome.wustl.edu	37	chr5	156589516	156589516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tctcggatgtcatagtgccaCtgatcatctccagctcctgg	9	13	4	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	156589516	156589516	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.1760	p.S587N	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	179	0	0	200	25	11.11	-	-	-	T	156589516	C	T	156589516	3	4	158	1	0	0	0	0	1	0	0	0	5653	565	20	4	61	4	FAM71B	5	156589516	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	10948163	156589516	24325744	14	9450										
MAML1	0	genome.wustl.edu	37	chr5	179195873	179195873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gcagaacccttccagtgtccCtgtgcaagcccaggctacca	9	16	0	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	179195873	179195873	C	T	SNP	MAML1	ENST00000292599	human	ensembl	69_37n	1	known	missense	c.1754	p.P585L	0.948	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	205	0	0	69	21	23.33	-	-	-	T	179195873	C	T	179195873	3	4	158	1	0	0	0	0	1	0	0	0	9276	681	24	4	1764	4	MAML1	5	179195873	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	22606357	179195873	1719387	15	9451										
HLA-C	0	genome.wustl.edu	37	chr6	31238880	31238880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	cagcgtctccttcccgttctCcaggtatctgcggagccact	9	16	3	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	31238880	31238880	C	T	SNP	HLA-C	ENST00000539307	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	0.999	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-C	HGNC	ENSG00000204525	19	0	0	16	7	30.43	-	-	-	T	31238880	C	T	31238880	3	4	158	1	0	0	0	0	1	0	0	0	7248	864	30	2	535	2	HLA-C	6	31238880	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		31238880	139876187	16	9452										
PEX6	0	genome.wustl.edu	37	chr6	42932852	42932852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gaacgcgtagctgggaggccCggtcctcatttgcccccaca	12	15	1	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	42932852	42932852	C	T	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.2627	p.R876Q	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	81	0	0	109	24	17.91	-	-	-	T	42932852	C	T	42932852	3	4	158	1	0	0	0	0	1	0	0	0	11824	652	23	1	327	1	PEX6	6	42932852	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	11693972	42932852	128182215	17	9453										
MDN1	0	genome.wustl.edu	37	chr6	90426511	90426511	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	accaaagcttcggaactcttCaacaagtttggcaaactctg	7	11	3	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	90426511	90426511	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.6601	p.E2201Q	1.000	smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	136	0	0	89	241	73.03	-	-	-	G	90426511	C	G	90426511	3	3	158	1	0	0	0	0	1	0	0	0	9486	835	29	2	10425	2	MDN1	6	90426511	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	47493659	90426511	80688556	18	9454										
PRDM1	0	genome.wustl.edu	37	chr6	106553776	106553776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	agtacgaatgcaacgtttgcGccaagactttcggccagctc	10	12	0	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	106553776	106553776	G	A	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.1741	p.A581T	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	74	0	0	27	11	28.21	-	-	-	A	106553776	G	A	106553776	3	1	158	1	0	0	0	0	1	0	0	0	12531	1087	38	1	1772	1	PRDM1	6	106553776	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	16127265	106553776	64561291	19	9455										
KLHL7	0	genome.wustl.edu	37	chr7	23163424	23163424	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gtgtgacgtgatcctcatggTccaggaaagaaagatacctg	12	8	1	4			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	7	23163424	23163424	T	G	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	missense	c.149	p.V50G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	34	0	0	223	45	16.79	-	-	-	G	23163424	T	G	23163424	3	3	158	1	0	0	0	0	1	0	0	0	8447	1667	58	5	155	5	KLHL7	7	23163424	Missense_Mutation	SNP	T	TCGA-A8-A06R-01A-11D-A015-09		23163424	135975239	20	9456										
MYBL1	0	genome.wustl.edu	37	chr8	67485600	67485600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ttatttaatacctacttaccCtacattttccttttgatctt	1	10	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	8	67485600	67485600	C	T	SNP	MYBL1	ENST00000522677	human	ensembl	69_37n	-1	known	missense	c.1612	p.G538R	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697	281	0	0	498	92	15.59	-	-	-	T	67485600	C	T	67485600	3	4	158	1	0	0	0	0	1	0	0	0	10081	695	24	4	670	4	MYBL1	8	67485600	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		67485600	78878422	21	9457										
ZFHX4	0	genome.wustl.edu	37	chr8	77620135	77620135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tcacattaaagaagggggcaAaagcaatgagtggaggttga	14	4	1	3			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	8	77620135	77620135	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2945	p.K982R	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	141	0	0	188	22	10.48	-	-	-	G	77620135	A	G	77620135	3	3	158	1	0	0	0	0	1	0	0	0	17731	14	1	5	2951	5	ZFHX4	8	77620135	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09	10134535	77620135	68743887	22	9458										
NR4A3	0	genome.wustl.edu	37	chr9	102609749	102609749	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gctgaagataagtttgtgttCtgcaatggacttgtcctgca	11	7	1	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	9	102609749	102609749	C	T	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	silent	c.1518	p.F506	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	90	0	0	222	54	19.57	-	-	-	T	102609749	C	T	102609749	2	4	158	1	0	0	0	0	0	0	0	1	10707	912	32	2		2	NR4A3	9	102609749	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		102609749	38603682	23	9459										
GRIN3A	0	genome.wustl.edu	37	chr9	104499857	104499857	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	agcagcccttccacgcggttCaggttgtccacggcaaatag	11	13	1	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	9	104499857	104499857	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	silent	c.405	p.L135	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	15	0	0	19	21	52.5	-	-	-	T	104499857	C	T	104499857	2	4	158	1	0	0	0	0	0	0	0	1	6834	813	29	2		2	GRIN3A	9	104499857	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	1890108	104499857	36713574	24	9460										
DHTKD1	0	genome.wustl.edu	37	chr10	12136161	12136161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gactggcttttgaataccaaCgccagttccgcaaggatgtg	11	10	0	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	12136161	12136161	C	T	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	missense	c.1249	p.R417C	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	44	0	0	131	117	46.99	-	-	-	T	12136161	C	T	12136161	3	4	158	1	0	0	0	0	1	0	0	0	4536	536	19	1	1275	1	DHTKD1	10	12136161	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		12136161	123398586	25	9461										
NSUN6	0	genome.wustl.edu	37	chr10	18931451	18931451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	cacatcttgaaggtctggatGttgaagaataggaacactta	10	6	2	3			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	18931451	18931451	G	A	SNP	NSUN6	ENST00000377304	human	ensembl	69_37n	-1	known	missense	c.265	p.H89Y	1.000	NULL	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,prints_RCMT,pfscan_PUA	-	no_errors	NSUN6	HGNC	ENSG00000241058	291	0	0	124	28	18.42	-	-	-	A	18931451	G	A	18931451	3	1	158	1	0	0	0	0	1	0	0	0	10755	1377	48	4	1180	4	NSUN6	10	18931451	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	6795290	18931451	116603296	26	9462										
DNA2	0	genome.wustl.edu	37	chr10	70218891	70218891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gcatctgagggaagtcagtcGaagtgtttttatgcatgaaa	12	5	2	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	70218891	70218891	G	A	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.947	p.S316L	0.385	pfam_DNA_replication_fac_Dna2	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	33	0	0	259	49	15.86	-	-	-	A	70218891	G	A	70218891	3	1	158	1	0	0	0	0	1	0	0	0	4632	1059	37	1	2561	1	DNA2	10	70218891	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	51287440	70218891	65315856	27	9463										
PNLIP	0	genome.wustl.edu	37	chr10	118315541	118315541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	actttgcggcctgtaatcacTtaagaagctacaaatattac	6	9	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	118315541	118315541	T	G	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	missense	c.841	p.L281V	0.254	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	211	0	0	212	46	17.83	-	-	-	G	118315541	T	G	118315541	3	3	158	1	0	0	0	0	1	0	0	0	12223	1606	56	5	871	5	PNLIP	10	118315541	Missense_Mutation	SNP	T	TCGA-A8-A06R-01A-11D-A015-09	48096650	118315541	17219206	28	9464										
TSG101	0	genome.wustl.edu	37	chr11	18531179	18531179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	atctccaaataccacaatcaTgacctgaataagccccaaca	3	14	2	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	18531179	18531179	T	C	SNP	TSG101	ENST00000251968	human	ensembl	69_37n	-1	known	missense	c.391	p.M131V	1.000	pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319	156	0	0	89	17	16.04	-	-	-	C	18531179	T	C	18531179	3	2	158	1	0	0	0	0	1	0	0	0	16712	1464	51	5	805	5	TSG101	11	18531179	Missense_Mutation	SNP	T	TCGA-A8-A06R-01A-11D-A015-09		18531179	116475337	29	9465										
NUP160	0	genome.wustl.edu	37	chr11	47859145	47859146	+	Frame_Shift_Del	DEL	CT	CT	-													0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gcaatcgttgcattactgaaCtctgtttcagttccacgact							TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	47859145	47859146	CT	-	DEL	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	frame_shift_del	c.779_778	p.S260fs	1.000:1.000	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	315	0	0	92	52	36.11	-	-	-	-	47859146	CT	-	47859145	7	5	158	1	0	1	0	1	0	0	0	0	10830	565	20	0	3659	0	NUP160	11	47859145	Frame_Shift_Del	DEL	CT	TCGA-A8-A06R-01A-11D-A015-09	29327966	47859145	87147371	30	9466										
DSCAML1	0	genome.wustl.edu	37	chr11	117342753	117342753	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tgcttgaagtcccaggaatcTggagagaagacacctatgtc	11	9	1	3			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	117342753	117342753	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	splice_site	c.2966-2	e15-2	1.000	-	-	-	no_errors	DSCAML1	HGNC	ENSG00000177103	48	0	0	95	76	44.44	-	-	-	C	117342753	T	C	117342753	5	2	158	1	0	0	0	0	0	0	1	0	4804	1594	55	5	3453	5	DSCAML1	11	117342753	Splice_Site	SNP	T	TCGA-A8-A06R-01A-11D-A015-09	69483608	117342753	17663763	31	9467										
LRTM2	0	genome.wustl.edu	37	chr12	1943503	1943503	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aaggacatgcggatggtcccCatggagatgttcaactactg	12	9	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1943503	1943503	C	A	SNP	LRTM2	ENST00000299194	human	ensembl	69_37n	1	known	silent	c.729	p.P243	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159	19	0	0	13	11	45.83	-	-	-	A	1943503	C	A	1943503	2	1	158	1	0	0	0	0	0	0	0	1	9111	581	21	4		4	LRTM2	12	1943503	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		1943503	131908392	32	9468			1	21		3	3	6458	C		6.294799e-05
LRTM2	0	genome.wustl.edu	37	chr12	1943594	1943594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	caccctgcaccaaggccagtCcagagcctgctaagcccaag	9	17	0	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1943594	1943594	C	T	SNP	LRTM2	ENST00000299194	human	ensembl	69_37n	1	known	missense	c.820	p.P274S	0.994	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159	20	0	0	16	6	27.27	-	-	-	T	1943594	C	T	1943594	3	4	158	1	0	0	0	0	1	0	0	0	9111	855	30	2	830	2	LRTM2	12	1943594	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	91	1943594	131908301	33	9469			1	21		3	3	6458	C		6.294799e-05
CACNA2D4	0	genome.wustl.edu	37	chr12	1949960	1949960	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gccacagctgtgcttgccgtCaccaccatgggttcacccgc	10	17	2	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1949960	1949960	C	T	SNP	CACNA2D4	ENST00000537784	human	ensembl	69_37n	-1	known	missense	c.337	p.D113N	0.763	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CACNA2D4	HGNC	ENSG00000151062	33	0	0	37	71	65.74	-	-	-	T	1949960	C	T	1949960	3	4	158	1	0	0	0	0	1	0	0	0	2576	813	29	2	969	2	CACNA2D4	12	1949960	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	6366	1949960	131901935	34	9470			1	21		3	3	6458	C		6.294799e-05
SSPN	0	genome.wustl.edu	37	chr12	26383694	26383694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ctgacggtctgtgtgctggcCgtggcctttgccgcccacca	13	15	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	26383694	26383694	C	T	SNP	SSPN	ENST00000242729	human	ensembl	69_37n	1	known	silent	c.417	p.A139	0.277	pfam_CD20-like	pfam_CD20-like	-	no_errors	SSPN	HGNC	ENSG00000123096	67	0	0	135	22	14.01	-	-	-	T	26383694	C	T	26383694	2	4	158	1	0	0	0	0	0	0	0	1	15279	639	23	1		1	SSPN	12	26383694	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	24433734	26383694	107468201	35	9471										
HSD17B6	0	genome.wustl.edu	37	chr12	57181033	57181033	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tattcagctggctgggatgcTaaatttttcttcatccctct	7	10	4	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	57181033	57181033	T	A	SNP	HSD17B6	ENST00000322165	human	ensembl	69_37n	1	known	silent	c.861	p.A287	0.022	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B6	HGNC	ENSG00000025423	69	0	0	86	19	18.1	-	-	-	A	57181033	T	A	57181033	2	1	158	1	0	0	0	0	0	0	0	1	7438	1509	53	5		5	HSD17B6	12	57181033	Silent	SNP	T	TCGA-A8-A06R-01A-11D-A015-09	30797339	57181033	76670862	36	9472										
ERP29	0	genome.wustl.edu	37	chr12	112460034	112460034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	acccagtcttctacctcttcCgggatggggactttgagaac	10	12	3	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	112460034	112460034	C	T	SNP	ERP29	ENST00000261735	human	ensembl	69_37n	1	known	missense	c.364	p.R122W	0.997	pfam_ERp29_N,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248	77	0	0	90	12	11.76	-	-	-	T	112460034	C	T	112460034	3	4	158	1	0	0	0	0	1	0	0	0	5279	643	23	1	374	1	ERP29	12	112460034	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	55279001	112460034	21391861	37	9473										
PDS5B	0	genome.wustl.edu	37	chr13	33275522	33275522	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aatcctttcctggaaatgatCaagtttctcttggagaggat	9	7	2	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	13	33275522	33275522	C	T	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	silent	c.1803	p.I601	0.994	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	80	0	0	227	132	36.77	-	-	-	T	33275522	C	T	33275522	2	4	158	1	0	0	0	0	0	0	0	1	11765	816	29	2		2	PDS5B	13	33275522	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		33275522	81894356	38	9474										
UCHL3	0	genome.wustl.edu	37	chr13	76141383	76141383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aatctggatcaaccttgaaaAaattcctggaggaatctgtg	9	7	3	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	13	76141383	76141383	A	G	SNP	UCHL3	ENST00000377595	human	ensembl	69_37n	1	known	missense	c.361	p.K121E	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL3	HGNC	ENSG00000118939	244	0	0	107	43	28.67	-	-	-	G	76141383	A	G	76141383	3	3	158	1	0	0	0	0	1	0	0	0	17018	15	1	5	379	5	UCHL3	13	76141383	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09	42865861	76141383	39028495	39	9475										
SALL2	0	genome.wustl.edu	37	chr14	21991858	21991858	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	cgcagattacccctggtggaGaaggctctgccacacacttt	10	13	1	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	21991858	21991858	G	A	SNP	SALL2	ENST00000546363	human	ensembl	69_37n	-1	putative	missense	c.1580	p.S527F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SALL2	HGNC	ENSG00000165821	78	0	0	54	24	30.77	-	-	-	A	21991858	G	A	21991858	3	1	158	1	0	0	0	0	1	0	0	0	13897	933	33	2	1023	2	SALL2	14	21991858	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09		21991858	85357682	40	9476										
LRRC16B	0	genome.wustl.edu	37	chr14	24528876	24528876	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gcttaccctccccccagaacTatcctatgggatcggaacaa	7	15	0	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	24528876	24528876	T	G	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	silent	c.1803	p.T601	0.997	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	10	0	0	125	43	25.6	-	-	-	G	24528876	T	G	24528876	2	3	158	1	0	0	0	0	0	0	0	1	9038	1509	53	5		5	LRRC16B	14	24528876	Silent	SNP	T	TCGA-A8-A06R-01A-11D-A015-09	2537018	24528876	82820664	41	9477										
SNW1	0	genome.wustl.edu	37	chr14	78205185	78205185	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	catggctgcggcgaccttctGtgatacagatttttctaagg	11	9	2	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	78205185	78205185	G	A	SNP	SNW1	ENST00000261531	human	ensembl	69_37n	-1	known	nonsense	c.469	p.Q157*	1.000	NULL	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603	127	0	0	132	65	32.83	-	-	-	A	78205185	G	A	78205185	4	1	158	1	0	0	0	0	0	1	0	0	14968	1386	48	4	1181	4	SNW1	14	78205185	Nonsense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	53676309	78205185	29144355	42	9478										
DYNC1H1	0	genome.wustl.edu	37	chr14	102452147	102452147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	aagtaaaccttgcttatgagAacgtcaaggaagtggatgga	12	5	1	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	102452147	102452147	A	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.1585	p.N529D	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	101	0	0	212	36	14.52	-	-	-	G	102452147	A	G	102452147	3	3	158	1	0	0	0	0	1	0	0	0	4876	246	9	5	1615	5	DYNC1H1	14	102452147	Missense_Mutation	SNP	A	TCGA-A8-A06R-01A-11D-A015-09	24246962	102452147	4897393	43	9479										
DIS3L	0	genome.wustl.edu	37	chr15	66618592	66618592	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tgggtcgccaaaaagatctgGgagagcttccctcatcaggc	12	11	3	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	15	66618592	66618592	G	A	SNP	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	nonsense	c.2091	p.W697*	0.999	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	100	0	0	57	8	12.31	-	-	-	A	66618592	G	A	66618592	4	1	158	1	0	0	0	0	0	1	0	0	4572	1241	43	4	2137	4	DIS3L	15	66618592	Nonsense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09		66618592	35912800	44	9480										
C17orf97	0	genome.wustl.edu	37	chr17	263606	263606	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gaccccgaggccctcaagggCttccaccccgaccccaaggc	10	20	1	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	263606	263606	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	silent	c.972	p.G324	0.001	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	18	0	0	24	5	17.24	-	-	-	T	263606	C	T	263606	2	4	158	1	0	0	0	0	0	0	0	1	1909	784	28	4		4	C17orf97	17	263606	Silent	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		263606	80931604	45	9481										
KRTAP1-1	0	genome.wustl.edu	37	chr17	39197512	39197512	+	Frame_Shift_Del	DEL	C	C	-													0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ctggtctggcagcagcttggCtggcagcagctggtctcaca							TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	39197512	39197512	C	-	DEL	KRTAP1-1	ENST00000306271	human	ensembl	69_37n	-1	known	frame_shift_del	c.138	p.Q46fs	0.109	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-1	HGNC	ENSG00000188581	45	0	0	16	17	51.52	-	-	-	-	39197512	C	-	39197512	7	5	158	1	0	1	0	1	0	0	0	0	8555	796	28	0	399	0	KRTAP1-1	17	39197512	Frame_Shift_Del	DEL	C	TCGA-A8-A06R-01A-11D-A015-09	38933906	39197512	41997698	46	9482										
BRIP1	0	genome.wustl.edu	37	chr17	59821953	59821953	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tcttttaatttttctaataaCtaaagaggggaaagaaaaaa	6	3	2	2			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	59821953	59821953	C	G	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	splice_site	c.2098-1	e14-1	1.000	-	-	-	no_errors	BRIP1	HGNC	ENSG00000136492	299	0	0	104	32	23.53	-	-	-	G	59821953	C	G	59821953	5	3	158	1	0	0	0	0	0	0	1	0	1522	579	20	4	1676	4	BRIP1	17	59821953	Splice_Site	SNP	C	TCGA-A8-A06R-01A-11D-A015-09	20624441	59821953	21373257	47	9483										
TTYH2	0	genome.wustl.edu	37	chr17	72248454	72248454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	gcctcttctccttcctggccGccctcgccttctccaccatg	6	21	3	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	72248454	72248454	G	T	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	missense	c.1198	p.A400S	0.992	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	42	0	0	177	35	16.51	-	-	-	T	72248454	G	T	72248454	3	4	158	1	0	0	0	0	1	0	0	0	16837	1087	38	3	1240	3	TTYH2	17	72248454	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	12426501	72248454	8946756	48	9484										
DSG4	0	genome.wustl.edu	37	chr18	28972180	28972182	+	In_Frame_Del	DEL	TCT	TCT	-													0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	atacgattacaagcaattgaTcttgatgaagaaggcactga							TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	18	28972180	28972182	TCT	-	DEL	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	in_frame_del	c.882_884	p.L295in_frame_del	1.000:0.999:0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	109	0	0	137	28	16.97	-	-	-	-	28972182	TCT	-	28972180	7	5	158	1	0	1	0	1	0	0	0	0	4814	1432	50	0	912	0	DSG4	18	28972180	In_Frame_Del	DEL	TCT	TCGA-A8-A06R-01A-11D-A015-09		28972180	49105068	49	9485										
MUC16	0	genome.wustl.edu	37	chr19	9048936	9048937	+	Frame_Shift_Del	DEL	AA	AA	-													0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ggtctctggttcaccaggagAaagagtcagaattggaatag							TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	19	9048936	9048937	AA	-	DEL	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	frame_shift_del	c.32695_32694	p.P10900fs	0.000:0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	706	0	0	109	53	32.72	-	-	-	-	9048937	AA	-	9048936	7	5	158	1	0	1	0	1	0	0	0	0	10045	246	9	0	11148	0	MUC16	19	9048936	Frame_Shift_Del	DEL	AA	TCGA-A8-A06R-01A-11D-A015-09		9048936	50080047	50	9486										
SLC24A3	0	genome.wustl.edu	37	chr20	19560658	19560658	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ttccaggccatatacatgttCtatgcgctggccattgtgtg	10	10	1	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	20	19560658	19560658	C	G	SNP	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	missense	c.363	p.F121L	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	67	0	0	598	109	15.4	-	-	-	G	19560658	C	G	19560658	3	3	158	1	0	0	0	0	1	0	0	0	14556	912	32	2	377	2	SLC24A3	20	19560658	Missense_Mutation	SNP	C	TCGA-A8-A06R-01A-11D-A015-09		19560658	43464862	51	9487										
HPS4	0	genome.wustl.edu	37	chr22	26860227	26860227	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	tctggggagagggtctgctcTgggaatgggggcttggctgc	20	7	3	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	22	26860227	26860227	T	G	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	silent	c.1408	p.R470	0.001	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	92	0	0	31	78	71.56	-	-	-	G	26860227	T	G	26860227	2	3	158	1	0	0	0	0	0	0	0	1	7392	1588	55	5		5	HPS4	22	26860227	Silent	SNP	T	TCGA-A8-A06R-01A-11D-A015-09		26860227	24444339	52	9488										
USP51	0	genome.wustl.edu	37	chrX	55513981	55513981	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	ccaccactatcatctttgctGtgtctatgtagcacgtctaa	6	12	4	0			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	X	55513981	55513981	G	C	SNP	USP51	ENST00000500968	human	ensembl	69_37n	-1	known	missense	c.1392	p.H464Q	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP51	HGNC	ENSG00000247746	175	0	0	189	28	12.9	-	-	-	C	55513981	G	C	55513981	3	2	158	1	0	0	0	0	1	0	0	0	17180	1368	48	4	747	4	USP51	23	55513981	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09		55513981	99756579	53	9489										
CUL4B	0	genome.wustl.edu	37	chrX	119694135	119694135	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.148148148148148	8	0.317828468483368	1.63888888888889	2.18518518518519	1.51282051282051	0.131934731934732	0.62934362934363	0	atgaggaggaggaggaggagGattcctcagccatcttcgca	15	8	2	1			TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	X	119694135	119694135	G	C	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.413	p.S138C	0.998	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	48	0	0	102	18	15	-	-	-	C	119694135	G	C	119694135	3	2	158	1	0	0	0	0	1	0	0	0	4089	1174	41	2	2408	2	CUL4B	23	119694135	Missense_Mutation	SNP	G	TCGA-A8-A06R-01A-11D-A015-09	64180154	119694135	35576425	54	9490										
MTOR	0	genome.wustl.edu	37	chr1	11187855	11187855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	atggccactcggatcagctcCtcgctcacctgaagccaaga	9	15	2	2			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	1	11187855	11187855	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.6042	p.E2014	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	141	0	0	135	40	22.86	-	-	-	T	11187855	C	T	11187855	2	4	159	1	0	0	0	0	0	0	0	1	10026	680	24	4		4	MTOR	1	11187855	Silent	SNP	C	TCGA-A8-A06T-01A-11W-A019-09		11187855	238062766	1	9491										
EIF3I	0	genome.wustl.edu	37	chr1	32691811	32691811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	caagaccaattcggctgtccGgacctgcggttttgactttg	11	11	0	2			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	1	32691811	32691811	G	A	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	missense	c.290	p.R97Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	62	0	0	63	20	23.81	-	-	-	A	32691811	G	A	32691811	3	1	159	1	0	0	0	0	1	0	0	0	5056	1116	39	1	308	1	EIF3I	1	32691811	Missense_Mutation	SNP	G	TCGA-A8-A06T-01A-11W-A019-09	21503956	32691811	216558810	2	9492										
RC3H1	0	genome.wustl.edu	37	chr1	173930909	173930909	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ttggatgaggagccactggaTagtaactctcgatctgttgg	13	7	2	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	1	173930909	173930909	T	C	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.2156	p.Y719C	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	292	0	0	209	161	43.51	-	-	-	C	173930909	T	C	173930909	3	2	159	1	0	0	0	0	1	0	0	0	13249	1406	49	5	1281	5	RC3H1	1	173930909	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09	141239098	173930909	75319712	3	9493										
SIPA1L2	0	genome.wustl.edu	37	chr1	232596654	232596654	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ttcggggcgagccgtcatcaTggggctggatgatgaccacc	15	11	2	2			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	1	232596654	232596654	T	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.3074	p.H1025L	0.965	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	93	0	0	66	40	37.38	-	-	-	A	232596654	T	A	232596654	3	1	159	1	0	0	0	0	1	0	0	0	14419	1464	51	5	2150	5	SIPA1L2	1	232596654	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09	58665745	232596654	16653967	4	9494										
APOB	0	genome.wustl.edu	37	chr2	21231263	21231263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	tgctggagaacttcactgacTccttcagagccagcggatta	10	11	2	3			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	2	21231263	21231263	T	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.8477	p.E2826G	0.977	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	492	0	0	216	101	31.86	-	-	-	C	21231263	T	C	21231263	3	2	159	1	0	0	0	0	1	0	0	0	787	1551	54	5	5230	5	APOB	2	21231263	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09		21231263	221968110	5	9495										
ASXL2	0	genome.wustl.edu	37	chr2	25978944	25978944	+	Frame_Shift_Del	DEL	G	G	-													0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	agtgaagaattcattgttaaGggctgagccatttaacttca							TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	2	25978944	25978944	G	-	DEL	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	frame_shift_del	c.979	p.N328fs	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	229	0	0	83	77	47.24	-	-	-	-	25978944	G	-	25978944	7	5	159	1	0	1	0	1	0	0	0	0	1071	1000	35	0	3344	0	ASXL2	2	25978944	Frame_Shift_Del	DEL	G	TCGA-A8-A06T-01A-11W-A019-09	4747681	25978944	217220429	6	9496										
SERTAD2	0	genome.wustl.edu	37	chr2	64863109	64863109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	tggtccagctctgtgaggtcCattttgaaaggctgacttgg	13	8	1	3			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	2	64863109	64863109	C	T	SNP	SERTAD2	ENST00000313349	human	ensembl	69_37n	-1	known	missense	c.897	p.M299I	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD2	HGNC	ENSG00000179833	59	0	0	61	26	29.89	-	-	-	T	64863109	C	T	64863109	3	4	159	1	0	0	0	0	1	0	0	0	14209	594	21	4	51	4	SERTAD2	2	64863109	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09	38884165	64863109	178336264	7	9497										
EPB41L4A	0	genome.wustl.edu	37	chr5	111500728	111500730	+	In_Frame_Del	DEL	TTG	TTG	-													0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ggaagcttgtatagtttttaTtgtttttgctgtgtgttttc							TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	5	111500728	111500730	TTG	-	DEL	EPB41L4A	ENST00000261486	human	ensembl	69_37n	-1	known	in_frame_del	c.2020_2018	p.T673in_frame_del	0.844:0.850:0.998	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	286	0	0	189	76	28.68	-	-	-	-	111500730	TTG	-	111500728	7	5	159	1	0	1	0	1	0	0	0	0	5192	1493	52	0	44	0	EPB41L4A	5	111500728	In_Frame_Del	DEL	TTG	TCGA-A8-A06T-01A-11W-A019-09		111500728	69414532	8	9498										
RBM12B	0	genome.wustl.edu	37	chr8	94746354	94746354	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ctgggggtggccgcctgaagTgctctgggggtggccgccgg	21	11	1	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	8	94746354	94746354	T	G	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	missense	c.2285	p.H762P	0.668	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	85	0	0	95	34	26.36	-	-	-	G	94746354	T	G	94746354	3	3	159	1	0	0	0	0	1	0	0	0	13197	1696	59	5	724	5	RBM12B	8	94746354	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09		94746354	51617668	9	9499										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	44	0	0	54	19	26.03	-	-	-	-	8111434	CA	-	8111433	8	5	159	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-A8-A06T-01A-11W-A019-09		8111433	127423314	10	9500										
C10orf71	0	genome.wustl.edu	37	chr10	50531374	50531374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	acaagccagtcacgggtgagCctgggagaggcaaaggtacc	15	10	1	2			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	10	50531374	50531374	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.784	p.P262S	0.003	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	101	0	0	69	40	36.7	-	-	-	T	50531374	C	T	50531374	3	4	159	1	0	0	0	0	1	0	0	0	1624	739	26	4	786	4	C10orf71	10	50531374	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09	42419941	50531374	85003373	11	9501										
LRP4	0	genome.wustl.edu	37	chr11	46894951	46894951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	cctggggaaaacagcaatggCccggggctcatccaggctat	13	12	1	0			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	11	46894951	46894951	C	T	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.4423	p.A1475T	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	78	0	0	55	17	23.61	-	-	-	T	46894951	C	T	46894951	3	4	159	1	0	0	0	0	1	0	0	0	9025	739	26	4	1334	4	LRP4	11	46894951	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09		46894951	88111565	12	9502										
ARID2	0	genome.wustl.edu	37	chr12	46246210	46246210	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	gagcagtatacaggaggcttCaaatgcggcaacacagcaat	11	9	1	0			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	12	46246210	46246210	C	T	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.4304	p.S1435L	0.999	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	372	0	0	398	65	14.04	-	-	-	T	46246210	C	T	46246210	3	4	159	1	0	0	0	0	1	0	0	0	917	838	29	2	4362	2	ARID2	12	46246210	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09		46246210	87605685	13	9503										
ARG2	0	genome.wustl.edu	37	chr14	68117462	68117462	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	agcactggatcttgttgaagTcaatcctcagttggccacct	9	11	3	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	14	68117462	68117462	T	C	SNP	ARG2	ENST00000261783	human	ensembl	69_37n	1	known	missense	c.890	p.V297A	1.000	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181	164	0	0	97	33	25.38	-	-	-	C	68117462	T	C	68117462	3	2	159	1	0	0	0	0	1	0	0	0	860	1667	58	5	920	5	ARG2	14	68117462	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09		68117462	39232078	14	9504										
TJP1	0	genome.wustl.edu	37	chr15	30012801	30012802	+	Frame_Shift_Ins	INS	-	-	AA													0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	gtgtctgtgtcttcatagtcINSagaagtgtgtctactgtccg							TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	15	30012801	30012802	-	AA	INS	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2524_2523	p.D841fs	1.000:1.000	prints_ZonOcculdens	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	121	0	0	75	41	35.34	-	-	-	AA	30012802	-	AA	30012801	7	5	159	1	0	1	1	0	0	0	0	0	16024	826	29	0	2762	0	TJP1	15	30012801	Frame_Shift_Ins	INS	-	TCGA-A8-A06T-01A-11W-A019-09		30012801	72518591	15	9505										
PPL	0	genome.wustl.edu	37	chr16	4939022	4939022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	gggaattggcacagatcttcTgtacttcctgctccctactt	8	12	2	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	16	4939022	4939022	T	C	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	missense	c.2354	p.Q785R	0.990	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	120	0	0	83	43	34.13	-	-	-	C	4939022	T	C	4939022	3	2	159	1	0	0	0	0	1	0	0	0	12411	1580	55	5	2932	5	PPL	16	4939022	Missense_Mutation	SNP	T	TCGA-A8-A06T-01A-11W-A019-09		4939022	85415731	16	9506										
C16orf89	0	genome.wustl.edu	37	chr16	5110367	5110367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ggcccgaacgtggggtacacCaaggaggcatcagtgtggat	16	9	1	0			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	16	5110367	5110367	C	T	SNP	C16orf89	ENST00000350219	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	0.999	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446	18	0	0	11	7	38.89	-	-	-	T	5110367	C	T	5110367	2	4	159	1	0	0	0	0	0	0	0	1	1855	593	21	4		4	C16orf89	16	5110367	Silent	SNP	C	TCGA-A8-A06T-01A-11W-A019-09	171345	5110367	85244386	17	9507										
KRT39	0	genome.wustl.edu	37	chr17	39120738	39120738	+	Frame_Shift_Del	DEL	T	T	-													0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	agtcagtttggtgttgtcaaTttgcgagaccagtctggaat							TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	17	39120738	39120738	T	-	DEL	KRT39	ENST00000355612	human	ensembl	69_37n	-1	known	frame_shift_del	c.511	p.I171fs	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859	402	0	0	253	136	34.34	-	-	-	-	39120738	T	-	39120738	7	5	159	1	0	1	0	1	0	0	0	0	8529	1493	52	0	988	0	KRT39	17	39120738	Frame_Shift_Del	DEL	T	TCGA-A8-A06T-01A-11W-A019-09		39120738	42074472	18	9508										
ABCA6	0	genome.wustl.edu	37	chr17	67110993	67110993	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	agtatgtcaaattgaacattGaattgaggacagacgccagt	10	6	1	4			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	17	67110993	67110993	G	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.1692	p.F564L	0.992	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	344	0	0	288	181	38.59	-	-	-	C	67110993	G	C	67110993	3	2	159	1	0	0	0	0	1	0	0	0	36	1281	45	2	3269	2	ABCA6	17	67110993	Missense_Mutation	SNP	G	TCGA-A8-A06T-01A-11W-A019-09	27990255	67110993	14084217	19	9509										
ZFP161	0	genome.wustl.edu	37	chr18	5290912	5290912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	cttccgcagccatcgctgccGcctgcaactgttctgtctcg	9	17	2	0			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	18	5290912	5290912	G	A	SNP	ZFP161	ENST00000357006	human	ensembl	69_37n	-1	known	missense	c.1295	p.A432V	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZFP161	HGNC	ENSG00000198081	62	0	0	78	40	32.79	-	-	-	A	5290912	G	A	5290912	3	1	159	1	0	0	0	0	1	0	0	0	17736	1087	38	1	58	1	ZFP161	18	5290912	Missense_Mutation	SNP	G	TCGA-A8-A06T-01A-11W-A019-09		5290912	72786336	20	9510										
NETO1	0	genome.wustl.edu	37	chr18	70526294	70526294	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	catcaaagtaaagttcaatgCactgtcttggagcggctgta	10	8	3	0			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	18	70526294	70526294	C	A	SNP	NETO1	ENST00000327305	human	ensembl	69_37n	-1	known	missense	c.236	p.C79F	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	118	0	0	121	59	32.78	-	-	-	A	70526294	C	A	70526294	3	1	159	1	0	0	0	0	1	0	0	0	10411	710	25	4	1402	4	NETO1	18	70526294	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09	65235382	70526294	7550954	21	9511										
B3GNT3	0	genome.wustl.edu	37	chr19	17922578	17922578	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	ggagcaagtactatgtgccaGaggtggtgactcagaatgag	15	6	1	4			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	19	17922578	17922578	G	C	SNP	B3GNT3	ENST00000318683	human	ensembl	69_37n	1	known	missense	c.766	p.E256Q	0.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913	31	0	0	27	14	34.15	-	-	-	C	17922578	G	C	17922578	3	2	159	1	0	0	0	0	1	0	0	0	1262	943	33	2	772	2	B3GNT3	19	17922578	Missense_Mutation	SNP	G	TCGA-A8-A06T-01A-11W-A019-09		17922578	41206405	22	9512										
PLCB4	0	genome.wustl.edu	37	chr20	9382205	9382205	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	tttctgctgatgacttgggtCacaaggaagctgttgcaaat	11	7	2	2			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	20	9382205	9382205	C	G	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.1579	p.H527D	1.000	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	43	0	0	31	8	20.51	-	-	-	G	9382205	C	G	9382205	3	3	159	1	0	0	0	0	1	0	0	0	12104	826	29	2	1645	2	PLCB4	20	9382205	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09		9382205	53643315	23	9513										
SEC14L4	0	genome.wustl.edu	37	chr22	30891391	30891391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	acagggcagccttcgtagtcGtagccacaaagaccacccga	10	14	0	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	22	30891391	30891391	G	A	SNP	SEC14L4	ENST00000255858	human	ensembl	69_37n	-1	known	silent	c.273	p.Y91	0.923	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488	36	0	0	18	8	30.77	-	-	-	A	30891391	G	A	30891391	2	1	159	1	0	0	0	0	0	0	0	1	14072	1140	40	1		1	SEC14L4	22	30891391	Silent	SNP	G	TCGA-A8-A06T-01A-11W-A019-09		30891391	20413175	24	9514										
SLITRK2	0	genome.wustl.edu	37	chrX	144903965	144903965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.22166911584178	2.53107344632768	7.59322033898305	0.843691148775895	0.485714285714286	1	0	tgctgagcggcgtttggttcCtcagtgtgttaaccgtggcc	14	10	1	1			TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7	b1e53432-5968-4fb9-acf4-f161e65013da	X	144903965	144903965	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.22	p.L8I	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	46	0	0	30	9	23.08	-	-	-	A	144903965	C	A	144903965	3	1	159	1	0	0	0	0	1	0	0	0	14832	681	24	4	24	4	SLITRK2	23	144903965	Missense_Mutation	SNP	C	TCGA-A8-A06T-01A-11W-A019-09		144903965	10366595	25	9515										
CCDC27	0	genome.wustl.edu	37	chr1	3688024	3688025	+	Frame_Shift_Ins	INS	-	-	C													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agcagaaaggcgtcaaagtgINSccccccctgcaacagtcaga							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	1	3688024	3688025	-	C	INS	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	frame_shift_ins	c.1908_1909	p.L638fs	0.063:0.211	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	38	0	0	32	4	11.11	-	-	-	C	3688025	-	C	3688024	7	5	160	1	0	1	1	0	0	0	0	0	2827	1306	46	0	1954	0	CCDC27	1	3688024	Frame_Shift_Ins	INS	-	TCGA-A8-A06U-01A-11W-A019-09		3688024	245562597	1	9516										
PTGFR	0	genome.wustl.edu	37	chr1	78958991	78958991	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtcgaggacctggtgtttctAcaacacagaagacatcaaag	10	9	2	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	1	78958991	78958991	A	C	SNP	PTGFR	ENST00000370757	human	ensembl	69_37n	1	known	missense	c.563	p.Y188S	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_PglndnF_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_PglndnF_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	PTGFR	HGNC	ENSG00000122420	182	0	0	106	26	19.7	-	-	-	C	78958991	A	C	78958991	3	2	160	1	0	0	0	0	1	0	0	0	12830	391	14	5	565	5	PTGFR	1	78958991	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	75270967	78958991	170291630	2	9517										
TPR	0	genome.wustl.edu	37	chr1	186315302	186315302	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ctctatggctcttcttttatCatcctgaagttcttgttttt	5	9	5	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	1	186315302	186315302	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.3061	p.D1021H	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	171	0	0	192	27	12.33	-	-	-	G	186315302	C	G	186315302	3	3	160	1	0	0	0	0	1	0	0	0	16512	826	29	2	4146	2	TPR	1	186315302	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	107356311	186315302	62935319	3	9518										
DENND1B	0	genome.wustl.edu	37	chr1	197611863	197611863	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tgcttaatttgctcgagataAtcacgatgcgcctttcatgc	8	10	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	1	197611863	197611863	A	C	SNP	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	missense	c.650	p.I217S	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	66	0	0	46	17	26.98	-	-	-	C	197611863	A	C	197611863	3	2	160	1	0	0	0	0	1	0	0	0	4463	101	4	5	1774	5	DENND1B	1	197611863	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	11296561	197611863	51638758	4	9519										
TTN	0	genome.wustl.edu	37	chr2	179408032	179408032	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	catcgtagagtggtttttccCaggcaagggtaacagtggat	13	7	0	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	2	179408032	179408032	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.88964	p.W29655*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	239	0	0	216	53	19.7	-	-	-	T	179408032	C	T	179408032	4	4	160	1	0	0	0	0	0	1	0	0	16832	595	21	4	11375	4	TTN	2	179408032	Nonsense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09		179408032	63791341	5	9520										
TTN	0	genome.wustl.edu	37	chr2	179442793	179442793	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	taaattgattgccataactcGgaattcatattcaagacctt	5	8	2	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	2	179442793	179442793	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.60745	p.R20249*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	137	0	0	100	33	24.81	-	-	-	A	179442793	G	A	179442793	4	1	160	1	0	0	0	0	0	1	0	0	16832	1124	39	1	39694	1	TTN	2	179442793	Nonsense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	34761	179442793	63756580	6	9521										
HTR1F	0	genome.wustl.edu	37	chr3	88039975	88039975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gaatgccatccaaaattctgGtgtccctcactctgtctggg	9	12	4	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	3	88039975	88039975	G	C	SNP	HTR1F	ENST00000319595	human	ensembl	69_37n	1	known	missense	c.76	p.V26L	0.970	prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1F	HGNC	ENSG00000179097	287	0	0	119	47	28.31	-	-	-	C	88039975	G	C	88039975	3	2	160	1	0	0	0	0	1	0	0	0	7494	1261	44	4	78	4	HTR1F	3	88039975	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		88039975	109982455	7	9522										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	159	0	0	46	393	89.52	-	-	-	G	178952085	A	G	178952085	3	3	160	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	90912110	178952085	19070345	8	9523										
RFC1	0	genome.wustl.edu	37	chr4	39314522	39314522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agcacgcctgtgattacaaaTataaggccttccaagcaatt	7	10	0	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	4	39314522	39314522	T	C	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.1233	p.I411M	0.105	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	584	0	0	259	270	50.85	-	-	-	C	39314522	T	C	39314522	3	2	160	1	0	0	0	0	1	0	0	0	13327	1396	49	5	2270	5	RFC1	4	39314522	Missense_Mutation	SNP	T	TCGA-A8-A06U-01A-11W-A019-09		39314522	151839754	9	9524										
OCIAD1	0	genome.wustl.edu	37	chr4	48835499	48835499	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tgaaagcttctggttcagatGtgagttcaattttctaatta	8	5	4	3			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	4	48835499	48835499	G	A	SNP	OCIAD1	ENST00000264312	human	ensembl	69_37n	1	known	splice_site	c.139+1	e2+1	1.000	-	-	-	no_errors	OCIAD1	HGNC	ENSG00000109180	52	0	0	37	10	21.28	-	-	-	A	48835499	G	A	48835499	5	1	160	1	0	0	0	0	0	0	1	0	10890	1391	48	4	165	4	OCIAD1	4	48835499	Splice_Site	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	9520977	48835499	142318777	10	9525										
USO1	0	genome.wustl.edu	37	chr4	76703933	76703933	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ggctcatatattcaacgtatGaaaccttggtttgaagttgg	10	6	2	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	4	76703933	76703933	G	A	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.783	p.M261I	1.000	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	64	0	0	66	76	53.52	-	-	-	A	76703933	G	A	76703933	3	1	160	1	0	0	0	0	1	0	0	0	17136	1290	45	2	652	2	USO1	4	76703933	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	27868434	76703933	114450343	11	9526										
GPR98	0	genome.wustl.edu	37	chr5	90050985	90050985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	acataaaagaagctcatgccGaagtttccattttgccggta	8	9	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	5	90050985	90050985	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.11563	p.E3855K	0.009	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	184	0	0	117	24	17.02	-	-	-	A	90050985	G	A	90050985	3	1	160	1	0	0	0	0	1	0	0	0	6772	1059	37	1	11781	1	GPR98	5	90050985	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		90050985	90864275	12	9527										
PCDHGA12	0	genome.wustl.edu	37	chr5	140811927	140811927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cttgcaagtgaaagtgatggCgcgggacaacgggcacccgc	15	11	0	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	5	140811927	140811927	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	missense	c.1601	p.A534V	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	74	0	0	69	32	31.68	-	-	-	T	140811927	C	T	140811927	3	4	160	1	0	0	0	0	1	0	0	0	11626	768	27	1	1603	1	PCDHGA12	5	140811927	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	50760942	140811927	40103333	13	9528										
F13A1	0	genome.wustl.edu	37	chr6	6206822	6206822	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tggagacattccagcagcagGaatggatgggtacctgagag	15	7	0	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	6206822	6206822	G	A	SNP	F13A1	ENST00000445223	human	ensembl	69_37n	-1	putative	silent	c.276	p.F92	0.008	smart_Transglutaminase-like	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	F13A1	HGNC	ENSG00000124491	20	0	0	13	6	31.58	-	-	-	A	6206822	G	A	6206822	2	1	160	1	0	0	0	0	0	0	0	1	5377	1189	41	2		2	F13A1	6	6206822	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		6206822	164908245	14	9529										
TSPO2	0	genome.wustl.edu	37	chr6	41011722	41011722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtatgggctggtggtgagcaCagcactgatctggcatccca	14	10	1	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	41011722	41011722	C	T	SNP	TSPO2	ENST00000373161	human	ensembl	69_37n	1	known	missense	c.359	p.T120I	0.007	pfam_TspO_MBR,pirsf_TspO_MBR	pfam_TspO_MBR,pirsf_TspO_MBR	-	no_errors	TSPO2	HGNC	ENSG00000112212	46	0	0	10	14	58.33	-	-	-	T	41011722	C	T	41011722	3	4	160	1	0	0	0	0	1	0	0	0	16752	478	17	4	369	4	TSPO2	6	41011722	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	34804900	41011722	130103345	15	9530										
TBX18	0	genome.wustl.edu	37	chr6	85448248	85448248	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tccagggatatcttcaaaggTcagagtccgtagtgatggtc	12	8	3	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	85448248	85448248	T	G	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	missense	c.1066	p.T356P	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	354	0	0	244	56	18.67	-	-	-	G	85448248	T	G	85448248	3	3	160	1	0	0	0	0	1	0	0	0	15748	1667	58	5	765	5	TBX18	6	85448248	Missense_Mutation	SNP	T	TCGA-A8-A06U-01A-11W-A019-09	44436526	85448248	85666819	16	9531										
GJA10	0	genome.wustl.edu	37	chr6	90604250	90604250	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cactcccactcaaccatagtGgggaaaatctggctgaccat	8	13	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	90604250	90604250	G	T	SNP	GJA10	ENST00000369352	human	ensembl	69_37n	1	known	silent	c.63	p.V21	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355	347	0	0	274	66	19.41	-	-	-	T	90604250	G	T	90604250	2	4	160	1	0	0	0	0	0	0	0	1	6453	1335	47	4		4	GJA10	6	90604250	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	5156002	90604250	80510817	17	9532										
SLC35F1	0	genome.wustl.edu	37	chr6	118556692	118556692	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gagaagaaaacctcctggcaAttttacgacgaagatggtgg	12	7	0	3			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	118556692	118556692	A	C	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	missense	c.370	p.I124L	1.000	pfam_DUF914_euk,pfam_DMT	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	257	1	0.39	229	37	13.91	-	-	-	C	118556692	A	C	118556692	3	2	160	1	0	0	0	0	1	0	0	0	14677	101	4	5	380	5	SLC35F1	6	118556692	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	27952442	118556692	52558375	18	9533										
TXLNB	0	genome.wustl.edu	37	chr6	139563701	139563701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	attggtgtcagccacgttgcGcggctggggcccagctgagg	17	11	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	6	139563701	139563701	G	A	SNP	TXLNB	ENST00000358430	human	ensembl	69_37n	-1	known	missense	c.2017	p.R673C	0.016	NULL	pfam_Taxilin	-	no_errors	TXLNB	HGNC	ENSG00000164440	48	0	0	21	8	27.59	-	-	-	A	139563701	G	A	139563701	3	1	160	1	0	0	0	0	1	0	0	0	16885	1087	38	1	41	1	TXLNB	6	139563701	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	21007009	139563701	31551366	19	9534										
DNAH11	0	genome.wustl.edu	37	chr7	21744132	21744132	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtgtttctgggcctggtcggTgacctgtttccagccctgga	14	11	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	7	21744132	21744132	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.6375	p.G2125	0.995	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	101	0	0	73	40	35.09	-	-	-	C	21744132	T	C	21744132	2	2	160	1	0	0	0	0	0	0	0	1	4635	1683	59	5		5	DNAH11	7	21744132	Silent	SNP	T	TCGA-A8-A06U-01A-11W-A019-09		21744132	137394531	20	9535										
UPP1	0	genome.wustl.edu	37	chr7	48147911	48147911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtaccagcagaggccgcagcGgctggtgagctacttcatca	13	12	2	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	7	48147911	48147911	G	A	SNP	UPP1	ENST00000331803	human	ensembl	69_37n	1	known	missense	c.890	p.R297Q	0.938	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP1	HGNC	ENSG00000183696	50	0	0	63	23	26.74	-	-	-	A	48147911	G	A	48147911	3	1	160	1	0	0	0	0	1	0	0	0	17109	1116	39	1	916	1	UPP1	7	48147911	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	26403779	48147911	110990752	21	9536										
RHEB	0	genome.wustl.edu	37	chr7	151188068	151188068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtaggagtccacaaattggcCttcaacaaattgaatcgtca	8	9	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	7	151188068	151188068	C	T	SNP	RHEB	ENST00000262187	human	ensembl	69_37n	-1	known	missense	c.85	p.G29S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHEB	HGNC	ENSG00000106615	176	0	0	81	21	20.59	-	-	-	T	151188068	C	T	151188068	3	4	160	1	0	0	0	0	1	0	0	0	13412	681	24	4	497	4	RHEB	7	151188068	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	103040157	151188068	7950595	22	9537										
SGK196	0	genome.wustl.edu	37	chr8	42977743	42977743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tttcgtggctccagagcaacTgtggccctatggagaggacg	14	10	0	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	8	42977743	42977743	T	C	SNP	SGK196	ENST00000331373	human	ensembl	69_37n	1	known	missense	c.776	p.L259P	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK196	Clone_based_vega_gene	ENSG00000185900	74	0	0	99	21	17.5	-	-	-	C	42977743	T	C	42977743	3	2	160	1	0	0	0	0	1	0	0	0	14296	1580	55	5	782	5	SGK196	8	42977743	Missense_Mutation	SNP	T	TCGA-A8-A06U-01A-11W-A019-09		42977743	103386279	23	9538										
DOCK8	0	genome.wustl.edu	37	chr9	429793	429793	+	Frame_Shift_Del	DEL	C	C	-													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cagcagcagcatggatgtcaCccggagccaagcctgtgcca							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	9	429793	429793	C	-	DEL	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	frame_shift_del	c.4565	p.R1523fs	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	50	0	0	10	2	16.67	-	-	-	-	429793	C	-	429793	7	5	160	1	0	1	0	1	0	0	0	0	4728	507	18	0	4707	0	DOCK8	9	429793	Frame_Shift_Del	DEL	C	TCGA-A8-A06U-01A-11W-A019-09		429793	140783638	24	9539										
FRMPD1	0	genome.wustl.edu	37	chr9	37746347	37746348	+	Frame_Shift_Ins	INS	-	-	G													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agacattttagaaacttcctINSggggggttggaaacaaacat							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	9	37746347	37746348	-	G	INS	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	frame_shift_ins	c.4318_4319	p.V1442fs	0.994:1.000	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	22	0	0	16	2	11.11	-	-	-	G	37746348	-	G	37746347	7	5	160	1	0	1	1	0	0	0	0	0	6106	1580	55	0	4376	0	FRMPD1	9	37746347	Frame_Shift_Ins	INS	-	TCGA-A8-A06U-01A-11W-A019-09	37316554	37746347	103467084	25	9540										
DAB2IP	0	genome.wustl.edu	37	chr9	124521225	124521225	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tttcctgccggtctgcagctGagcgggataagtggatggag	16	8	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	9	124521225	124521225	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.565	p.E189K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	11	0	0	16	7	30.43	-	-	-	A	124521225	G	A	124521225	3	1	160	1	0	0	0	0	1	0	0	0	4251	1291	45	2	499	2	DAB2IP	9	124521225	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	86774878	124521225	16692206	26	9541										
UPF2	0	genome.wustl.edu	37	chr10	12071392	12071392	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cagtatttttcttcaaacttGagtcgaggcggctgaagaag	11	7	2	3			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	10	12071392	12071392	G	C	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	nonsense	c.497	p.S166*	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	239	1	0.42	249	62	19.94	-	-	-	C	12071392	G	C	12071392	4	2	160	1	0	0	0	0	0	1	0	0	17101	1294	45	2	3401	2	UPF2	10	12071392	Nonsense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		12071392	123463355	27	9542										
PCDH15	0	genome.wustl.edu	37	chr10	55582296	55582296	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ggatgggcaaaattttcaaaAatatttctttcggtttcaat	7	5	3	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	10	55582296	55582296	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	silent	c.5190	p.I1730	0.009	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	164	0	0	107	39	26.71	-	-	-	G	55582296	A	G	55582296	2	3	160	1	0	0	0	0	0	0	0	1	11584	10	1	5		5	PCDH15	10	55582296	Silent	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	43510904	55582296	79952451	28	9543										
HPS5	0	genome.wustl.edu	37	chr11	18339303	18339303	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gatcaagaaattcacctttaGacgactggagtccagccgca	9	11	2	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	18339303	18339303	G	C	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.103	p.L35V	1.000	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	24	0	0	45	35	43.75	-	-	-	C	18339303	G	C	18339303	3	2	160	1	0	0	0	0	1	0	0	0	7393	933	33	2	3374	2	HPS5	11	18339303	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		18339303	116667213	29	9544										
LRP4	0	genome.wustl.edu	37	chr11	46880600	46880600	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gtgtctggcagagagcctcgTctttctggagtggctgcagt	15	9	3	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	46880600	46880600	T	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	silent	c.5652	p.R1884	0.999	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	38	0	0	25	10	28.57	-	-	-	C	46880600	T	C	46880600	2	2	160	1	0	0	0	0	0	0	0	1	9025	1664	58	5		5	LRP4	11	46880600	Silent	SNP	T	TCGA-A8-A06U-01A-11W-A019-09	28541297	46880600	88125916	30	9545										
ACTN3	0	genome.wustl.edu	37	chr11	66318787	66318787	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	atcgaggaagatttccgcaaTggcctcaaactcatgctgct	9	11	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	66318787	66318787	T	C	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	silent	c.354	p.N118	0.971	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	33	0	0	42	5	10.64	-	-	-	C	66318787	T	C	66318787	2	2	160	1	0	0	0	0	0	0	0	1	206	1461	51	5		5	ACTN3	11	66318787	Silent	SNP	T	TCGA-A8-A06U-01A-11W-A019-09	19438187	66318787	68687729	31	9546										
SSH3	0	genome.wustl.edu	37	chr11	67077326	67077326	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gcctatgccatgaagcagtaCgaatgcagcctggagcaggc	13	11	0	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	67077326	67077326	C	T	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	silent	c.1296	p.Y432	0.797	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	15	0	0	17	4	19.05	-	-	-	T	67077326	C	T	67077326	2	4	160	1	0	0	0	0	0	0	0	1	15277	547	19	1		1	SSH3	11	67077326	Silent	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	758539	67077326	67929190	32	9547										
ODZ4	0	genome.wustl.edu	37	chr11	78412585	78412585	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	acttactcataaaatgttgtCcatccgttttcattgctttt	4	9	2	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	78412585	78412585	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	nonsense	c.5073	p.W1691*	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	77	0	0	38	6	13.64	-	-	-	T	78412585	C	T	78412585	4	4	160	1	0	0	0	0	0	1	0	0	10910	856	30	2	3264	2	ODZ4	11	78412585	Nonsense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	11335259	78412585	56593931	33	9548										
KIAA1377	0	genome.wustl.edu	37	chr11	101829065	101829065	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	aactggaggaaactcagaaaCtcctcgaagatcaacatcta	7	10	3	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	11	101829065	101829065	C	A	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.673	p.L225I	0.998	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	687	0	0	430	110	20.37	-	-	-	A	101829065	C	A	101829065	3	1	160	1	0	0	0	0	1	0	0	0	8279	565	20	4	691	4	KIAA1377	11	101829065	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	23416480	101829065	33177451	34	9549										
METAP2	0	genome.wustl.edu	37	chr12	95888899	95888899	+	Nonsense_Mutation	SNP	G	G	T													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	acatctgtaaaatagactttGgaacacatataagtggtaaa							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	12	95888899	95888899	G	T	SNP	METAP2	ENST00000323666	human	ensembl	69_37n	1	known	nonsense	c.757	p.G253*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	-	no_errors	METAP2	HGNC	ENSG00000111142	227	0	0	98	132	57.39	-	-	-	T	95888899	G	T	95888899	4	4	160	1	0	0	0	0	0	1	0	0	9558	1349	47	4	779	4	METAP2	12	95888899	Nonsense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		95888899	37962996	35	9550	75	2								
METAP2	0	genome.wustl.edu	37	chr12	95888900	95888900	+	Missense_Mutation	SNP	G	G	T													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	catctgtaaaatagactttgGaacacatataagtggtaaat							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	12	95888900	95888900	G	T	SNP	METAP2	ENST00000323666	human	ensembl	69_37n	1	known	missense	c.758	p.G253V	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	-	no_errors	METAP2	HGNC	ENSG00000111142	224	2	0.88	95	132	58.15	-	-	-	T	95888900	G	T	95888900	3	4	160	1	0	0	0	0	1	0	0	0	9558	1174	41	2	780	2	METAP2	12	95888900	Missense_Mutation	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	1	95888900	37962995	36	9551	75	2								
NIN	0	genome.wustl.edu	37	chr14	51288724	51288724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cccgtcgtgtcaaaactgtcAaacagctccttgagtcgggc	10	13	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	14	51288724	51288724	A	C	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.51	p.F17L	1.000	pfscan_EF_HAND_2	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	185	0	0	124	36	22.5	-	-	-	C	51288724	A	C	51288724	3	2	160	1	0	0	0	0	1	0	0	0	10489	127	5	5	6614	5	NIN	14	51288724	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09		51288724	56060816	37	9552										
SPTB	0	genome.wustl.edu	37	chr14	65216860	65216862	+	In_Frame_Del	DEL	GTT	GTT	-													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ttcctgagcacacagtacagGttgttccaggacctgcaaag							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	14	65216860	65216862	GTT	-	DEL	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	in_frame_del	c.6615_6613	p.N2205in_frame_del	0.994:1.000:1.000	pirsf_Spectrin_bsu,pfam_Pleckstrin_homology,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	27	0	0	12	5	29.41	-	-	-	-	65216862	GTT	-	65216860	7	5	160	1	0	1	0	1	0	0	0	0	15209	1252	44	0	383	0	SPTB	14	65216860	In_Frame_Del	DEL	GTT	TCGA-A8-A06U-01A-11W-A019-09	13928136	65216860	42132680	38	9553										
AHNAK2	0	genome.wustl.edu	37	chr14	105415953	105415953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ggcagagacacctcgacatcGggggctgtcacttccgcctt	12	14	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	14	105415953	105415953	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.5835	p.P1945	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	53	0	0	38	13	25.49	-	-	-	A	105415953	G	A	105415953	2	1	160	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105415953	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	40199093	105415953	1933587	39	9554										
HERC2	0	genome.wustl.edu	37	chr15	28421694	28421694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	gaatgttacagccttcacttCcgccccggcccagttttcca	7	16	1	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	15	28421694	28421694	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.9566	p.G3189E	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	278	0	0	269	43	13.69	-	-	-	T	28421694	C	T	28421694	3	4	160	1	0	0	0	0	1	0	0	0	7109	855	30	2	5062	2	HERC2	15	28421694	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09		28421694	74109698	40	9555										
SLC12A1	0	genome.wustl.edu	37	chr15	48580714	48580714	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	attgaagaagaaaaaattgtGtaagtagtttgccactcaca	8	5	1	3			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	15	48580714	48580714	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	69_37n	1	known	splice_site	c.2873+1	e22+1	1.000	-	-	-	no_errors	SLC12A1	HGNC	ENSG00000074803	12	0	0	22	8	26.67	-	-	-	A	48580714	G	A	48580714	5	1	160	1	0	0	0	0	0	0	1	0	14471	1391	48	4	3060	4	SLC12A1	15	48580714	Splice_Site	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	20159020	48580714	53950678	41	9556										
CHD2	0	genome.wustl.edu	37	chr15	93545466	93545466	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	aagaagaaagagaacaaggaGaacaaggagaaacaaatgag	12	3	0	6			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	15	93545466	93545466	G	A	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	silent	c.4197	p.E1399	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	429	1	0.23	350	145	29.23	-	-	-	A	93545466	G	A	93545466	2	1	160	1	0	0	0	0	0	0	0	1	3354	933	33	2		2	CHD2	15	93545466	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	44964752	93545466	8985926	42	9557										
TNFSF13	0	genome.wustl.edu	37	chr17	7462459	7462460	+	Frame_Shift_Ins	INS	-	-	G													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agttgccctctggttgagttINSggggggcagctctgggggcc							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	7462459	7462460	-	G	INS	TNFSF13	ENST00000338784	human	ensembl	69_37n	1	known	frame_shift_ins	c.103_104	p.A37fs	1.000:1.000	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF13	HGNC	ENSG00000161955	15	0	0	25	4	13.79	-	-	-	G	7462460	-	G	7462459	7	5	160	1	0	1	1	0	0	0	0	0	16400	1812	63	0	105	0	TNFSF13	17	7462459	Frame_Shift_Ins	INS	-	TCGA-A8-A06U-01A-11W-A019-09		7462459	73732751	43	9558										
TP53	0	genome.wustl.edu	37	chr17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-													0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	acactatgtcgaaaagtgttTctgtcatccaaatactccac							TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	7578222	7578223	TC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	72	0	0	42	54	55.67	-	-	-	-	7578223	TC	-	7578222	7	5	160	1	0	1	0	1	0	0	0	0	16477	1780	62	0	667	0	TP53	17	7578222	Frame_Shift_Del	DEL	TC	TCGA-A8-A06U-01A-11W-A019-09	115763	7578222	73616988	44	9559										
MYH4	0	genome.wustl.edu	37	chr17	10366448	10366448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tggacaggatttgataaaatAtgtggtagcttctttcagcc	10	6	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	10366448	10366448	A	G	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.863	p.I288T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	196	0	0	96	41	29.93	-	-	-	G	10366448	A	G	10366448	3	3	160	1	0	0	0	0	1	0	0	0	10109	449	16	5	5080	5	MYH4	17	10366448	Missense_Mutation	SNP	A	TCGA-A8-A06U-01A-11W-A019-09	2788226	10366448	70828762	45	9560										
KCNJ12	0	genome.wustl.edu	37	chr17	21318698	21318698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cccctacagcatcgtgtcatCggaggaggacgggctgcacc	13	14	1	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	21318698	21318698	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	missense	c.44	p.S15L	0.996	pfam_K_chnl_inward-rec_Kir_N	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	8	0	0	8	4	33.33	-	-	-	T	21318698	C	T	21318698	3	4	160	1	0	0	0	0	1	0	0	0	8100	893	31	1	46	1	KCNJ12	17	21318698	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	10952250	21318698	59876512	46	9561										
KRT35	0	genome.wustl.edu	37	chr17	39637093	39637093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ggatgccctccccaaaccagCccccacccccactgtagctg	7	21	0	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	39637093	39637093	C	T	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	missense	c.257	p.G86D	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	49	0	0	29	10	25.64	-	-	-	T	39637093	C	T	39637093	3	4	160	1	0	0	0	0	1	0	0	0	8525	739	26	4	1138	4	KRT35	17	39637093	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	18318395	39637093	41558117	47	9562										
CNTNAP1	0	genome.wustl.edu	37	chr17	40847561	40847561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	attggtggtttctttgagccGggcacctggatgcgctataa	13	8	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	40847561	40847561	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	silent	c.3015	p.P1005	0.019	superfamily_ConA-like_lec_gl	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	84	0	0	85	13	13.27	-	-	-	A	40847561	G	A	40847561	2	1	160	1	0	0	0	0	0	0	0	1	3676	1103	39	1		1	CNTNAP1	17	40847561	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09	1210468	40847561	40347649	48	9563										
ABCA9	0	genome.wustl.edu	37	chr17	66982354	66982354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	cctgagacctttcacggcagCgtacacctccaggtgctgcc	10	16	1	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	17	66982354	66982354	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.4159	p.A1387T	0.503	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	253	0	0	266	72	21.18	-	-	-	T	66982354	C	T	66982354	3	4	160	1	0	0	0	0	1	0	0	0	39	768	27	1	747	1	ABCA9	17	66982354	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	26134793	66982354	14212856	49	9564										
ZNF831	0	genome.wustl.edu	37	chr20	57769143	57769143	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agaaaaggggcacagttgggGggggacaagggggacaggat	21	4	0	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	20	57769143	57769143	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	silent	c.3069	p.G1023	0.011	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	15	0	0	17	5	22.73	-	-	-	A	57769143	G	A	57769143	2	1	160	1	0	0	0	0	0	0	0	1	18278	1219	43	4		4	ZNF831	20	57769143	Silent	SNP	G	TCGA-A8-A06U-01A-11W-A019-09		57769143	5256377	50	9565										
UMODL1	0	genome.wustl.edu	37	chr21	43508466	43508466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	ctgcactcagcccctgggaaCgcctccaccacagtgtcgcg	10	18	1	0			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	21	43508466	43508466	C	T	SNP	UMODL1	ENST00000400421	human	ensembl	69_37n	1	known	missense	c.173	p.T58M	0.139	NULL	pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UMODL1	HGNC	ENSG00000177398	17	0	0	10	4	25	-	-	-	T	43508466	C	T	43508466	3	4	160	1	0	0	0	0	1	0	0	0	17077	535	19	1	684	1	UMODL1	21	43508466	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09		43508466	4621429	51	9566										
KRTAP10-8	0	genome.wustl.edu	37	chr21	46032028	46032028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	agcacccaccatggctgacgCctgctgcaccaggacgtatg	11	15	0	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	21	46032028	46032028	C	T	SNP	KRTAP10-8	ENST00000334662	human	ensembl	69_37n	1	known	missense	c.11	p.A4V	0.844	NULL	pfam_PMG	-	no_errors	KRTAP10-8	HGNC	ENSG00000187766	183	0	0	155	53	25.36	-	-	-	T	46032028	C	T	46032028	3	4	160	1	0	0	0	0	1	0	0	0	8568	739	26	4	13	4	KRTAP10-8	21	46032028	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	2523562	46032028	2097867	52	9567										
TEX11	0	genome.wustl.edu	37	chrX	69773227	69773227	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tttttcaaggccttgagagcAatcaaaggatagtgtgcagg	12	6	2	1			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	X	69773227	69773227	A	G	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	silent	c.2373	p.I791	0.003	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	101	1	0.98	107	18	14.4	-	-	-	G	69773227	A	G	69773227	2	3	160	1	0	0	0	0	0	0	0	1	15869	126	5	5		5	TEX11	23	69773227	Silent	SNP	A	TCGA-A8-A06U-01A-11W-A019-09		69773227	85497333	53	9568										
BTK	0	genome.wustl.edu	37	chrX	100613405	100613405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.553235724720845	1.42878787878788	5.35795454545455	0.824300699300699	1	1	0	tggaacacacaacataatgaCgtatcaccccttgagggtcc	8	12	1	2			TCGA-A8-A06U-01A-11W-A019-09	TCGA-A8-A06U-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	277c2e8a-dd28-4b8f-96d3-ea790a1986b6	115bb522-26a3-418d-90bb-e786e9c87b88	X	100613405	100613405	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.995	p.R332H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	192	0	0	254	31	10.88	-	-	-	T	100613405	C	T	100613405	3	4	160	1	0	0	0	0	1	0	0	0	1566	536	19	1	1016	1	BTK	23	100613405	Missense_Mutation	SNP	C	TCGA-A8-A06U-01A-11W-A019-09	30840178	100613405	54657155	54	9569										
NMNAT1	0	genome.wustl.edu	37	chr1	10042669	10042669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gtccaagaatacattgaaaaGcataatttgtacagctctga	7	7	1	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	10042669	10042669	G	T	SNP	NMNAT1	ENST00000377205	human	ensembl	69_37n	1	known	missense	c.750	p.K250N	0.996	tigrfam_NAMN_adtrnsfrase	pfam_Cytidylyltransf,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT1	HGNC	ENSG00000173614	55	0	0	74	52	41.27	-	-	-	T	10042669	G	T	10042669	3	4	161	1	0	0	0	0	1	0	0	0	10570	962	34	4	764	4	NMNAT1	1	10042669	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		10042669	239207952	1	9570										
KIF1B	0	genome.wustl.edu	37	chr1	10356711	10356711	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agagggtgtcccagcctgttCagctgcgctcaggtgagact	14	11	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	10356711	10356711	C	G	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.1711	p.Q571E	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	40	0	0	58	28	32.56	-	-	-	G	10356711	C	G	10356711	3	3	161	1	0	0	0	0	1	0	0	0	8336	827	29	2	1777	2	KIF1B	1	10356711	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	314042	10356711	238893910	2	9571										
TARDBP	0	genome.wustl.edu	37	chr1	11082428	11082428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgcgttcagcattaatccagCcatgatggctgccgcccagg	11	13	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	11082428	11082428	C	T	SNP	TARDBP	ENST00000240185	human	ensembl	69_37n	1	known	missense	c.962	p.A321V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TARDBP	HGNC	ENSG00000120948	48	0	0	120	37	23.57	-	-	-	T	11082428	C	T	11082428	3	4	161	1	0	0	0	0	1	0	0	0	15649	739	26	4	980	4	TARDBP	1	11082428	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	725717	11082428	238168193	3	9572										
PRDM2	0	genome.wustl.edu	37	chr1	14108179	14108179	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcctcaatcagcattacccaAgctttaaaccacctccattt	3	15	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	14108179	14108179	A	T	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.3889	p.S1297C	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	243	0	0	265	61	18.71	-	-	-	T	14108179	A	T	14108179	3	4	161	1	0	0	0	0	1	0	0	0	12539	72	3	5	3915	5	PRDM2	1	14108179	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	3025751	14108179	235142442	4	9573										
TAS1R2	0	genome.wustl.edu	37	chr1	19180890	19180890	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttgtcgcactcctggttgcaGgtatagctctggctggtcct	12	11	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	19180890	19180890	G	C	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	silent	c.1074	p.T358	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	29	0	0	15	12	44.44	-	-	-	C	19180890	G	C	19180890	2	2	161	1	0	0	0	0	0	0	0	1	15655	987	35	4		4	TAS1R2	1	19180890	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	5072711	19180890	230069731	5	9574										
KIF17	0	genome.wustl.edu	37	chr1	21009345	21009345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccttgttcttggcctgctctCcacccacaacctgctgctcc	6	19	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	21009345	21009345	C	T	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.2264	p.G755E	0.975	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	79	0	0	50	16	24.24	-	-	-	T	21009345	C	T	21009345	3	4	161	1	0	0	0	0	1	0	0	0	8331	855	30	2	845	2	KIF17	1	21009345	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	1828455	21009345	228241276	6	9575										
PTPRU	0	genome.wustl.edu	37	chr1	29642551	29642551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcatgatgcaatcctggaggCctgcctgtgtggggagacca	14	10	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	29642551	29642551	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.3431	p.A1144V	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	26	0	0	18	13	41.94	-	-	-	T	29642551	C	T	29642551	3	4	161	1	0	0	0	0	1	0	0	0	12896	739	26	4	3551	4	PTPRU	1	29642551	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	8633206	29642551	219608070	7	9576										
ZMPSTE24	0	genome.wustl.edu	37	chr1	40751696	40751696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cagtcaaaaatatcattattAgccaggtaagtgtggagtga	10	5	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	40751696	40751696	A	G	SNP	ZMPSTE24	ENST00000372759	human	ensembl	69_37n	1	known	missense	c.1054	p.S352G	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073	54	0	0	61	21	25.61	-	-	-	G	40751696	A	G	40751696	3	3	161	1	0	0	0	0	1	0	0	0	17794	420	15	5	1084	5	ZMPSTE24	1	40751696	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	11109145	40751696	208498925	8	9577										
INADL	0	genome.wustl.edu	37	chr1	62380272	62380272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	accataggtcattcctaacgTacataacaaggccaacaaaa	5	11	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	62380272	62380272	T	C	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.3506	p.V1169A	0.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	188	0	0	298	74	19.84	-	-	-	C	62380272	T	C	62380272	3	2	161	1	0	0	0	0	1	0	0	0	7785	1638	57	5	3604	5	INADL	1	62380272	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	21628576	62380272	186870349	9	9578										
F3	0	genome.wustl.edu	37	chr1	95001579	95001579	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agaggctccccagcagaaccGgtgctctccacattccctgc	9	17	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	95001579	95001579	G	T	SNP	F3	ENST00000334047	human	ensembl	69_37n	-1	known	silent	c.354	p.T118	0.000	superfamily_Fibronectin_type3,pirsf_Tissue_fac/coagulation_fac-3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Tissue_fac/coagulation_fac-3,prints_Tissue_factor	-	no_errors	F3	HGNC	ENSG00000117525	112	1	0.88	169	21	11.05	-	-	-	T	95001579	G	T	95001579	2	4	161	1	0	0	0	0	0	0	0	1	5384	1103	39	3		3	F3	1	95001579	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	32621307	95001579	154249042	10	9579										
COL11A1	0	genome.wustl.edu	37	chr1	103412494	103412494	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gccagctgtacctgctgaccCacgttctcctggtgagccct	10	16	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	103412494	103412494	C	G	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.3223	p.G1075R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	25	0	0	44	17	27.87	-	-	-	G	103412494	C	G	103412494	3	3	161	1	0	0	0	0	1	0	0	0	3697	594	21	4	2337	4	COL11A1	1	103412494	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	8410915	103412494	145838127	11	9580										
CHIA	0	genome.wustl.edu	37	chr1	111861257	111861257	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cacctctggtgctggtcctgCtgggccctatgccaaggagt	13	13	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	111861257	111861257	C	A	SNP	CHIA	ENST00000343320	human	ensembl	69_37n	1	known	missense	c.872	p.A291D	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216	139	0	0	188	47	19.92	-	-	-	A	111861257	C	A	111861257	3	1	161	1	0	0	0	0	1	0	0	0	3371	797	28	4	902	4	CHIA	1	111861257	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	8448763	111861257	137389364	12	9581										
ATP5F1	0	genome.wustl.edu	37	chr1	111996910	111996910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acctcttcctgaatacggagGaaaagttcgttatggactga	10	8	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	111996910	111996910	G	T	SNP	ATP5F1	ENST00000369722	human	ensembl	69_37n	1	known	missense	c.155	p.G52V	1.000	NULL	pfam_ATPase_F0-cplx_bsu_mt	-	no_errors	ATP5F1	HGNC	ENSG00000116459	153	0	0	163	88	34.78	-	-	-	T	111996910	G	T	111996910	3	4	161	1	0	0	0	0	1	0	0	0	1156	1174	41	2	165	2	ATP5F1	1	111996910	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	135653	111996910	137253711	13	9582										
DDX20	0	genome.wustl.edu	37	chr1	112305306	112305306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcttcaattcaagacttctcGtgggattgatgctgagaagg	11	7	4	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	112305306	112305306	G	A	SNP	DDX20	ENST00000369702	human	ensembl	69_37n	1	known	missense	c.1112	p.R371H	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703	103	0	0	117	26	18.18	-	-	-	A	112305306	G	A	112305306	3	1	161	1	0	0	0	0	1	0	0	0	4379	1145	40	1	1146	1	DDX20	1	112305306	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	308396	112305306	136945315	14	9583										
SPAG17	0	genome.wustl.edu	37	chr1	118535191	118535191	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gggctcttgagtatggcaccCggggcactcactagctgttt	13	11	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	118535191	118535191	C	T	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	silent	c.5259	p.P1753	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	102	0	0	205	85	29.31	-	-	-	T	118535191	C	T	118535191	2	4	161	1	0	0	0	0	0	0	0	1	15070	639	23	1		1	SPAG17	1	118535191	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	6229885	118535191	130715430	15	9584										
PRKAB2	0	genome.wustl.edu	37	chr1	146639408	146639408	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccagagatgaagacctccttGcctccttcagaccagcggat	9	14	1	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	146639408	146639408	G	T	SNP	PRKAB2	ENST00000254101	human	ensembl	69_37n	-1	known	silent	c.261	p.G87	1.000	superfamily_Ig_E-set	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791	179	0	0	245	33	11.83	-	-	-	T	146639408	G	T	146639408	2	4	161	1	0	0	0	0	0	0	0	1	12577	1306	46	4		4	PRKAB2	1	146639408	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	28104217	146639408	102611213	16	9585										
HIST2H3D	0	genome.wustl.edu	37	chr1	149784973	149784973	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcctgcagcgccatcacggcCgagctctggaagcgcaggtc	13	15	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	149784973	149784973	C	T	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	silent	c.264	p.S88	0.989	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	39	0	0	25	15	37.5	-	-	-	T	149784973	C	T	149784973	2	4	161	1	0	0	0	0	0	0	0	1	7232	639	23	1		1	HIST2H3D	1	149784973	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	3145565	149784973	99465648	17	9586										
HRNR	0	genome.wustl.edu	37	chr1	152186699	152186699	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gttgaccgtagccagaggacTgtcctgagcgagactctcgg	14	11	1	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	152186699	152186699	T	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.7406	p.Q2469L	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	52	0	0	27	7	20.59	-	-	-	A	152186699	T	A	152186699	3	1	161	1	0	0	0	0	1	0	0	0	7410	1580	55	5	1150	5	HRNR	1	152186699	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	2401726	152186699	97063922	18	9587										
LCE1C	0	genome.wustl.edu	37	chr1	152777887	152777887	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gacactttggggtggggcacTtgggagggcacttgggggtg	21	6	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	152777887	152777887	T	A	SNP	LCE1C	ENST00000368768	human	ensembl	69_37n	-1	known	missense	c.68	p.K23M	0.988	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084	85	0	0	92	70	43.21	-	-	-	A	152777887	T	A	152777887	3	1	161	1	0	0	0	0	1	0	0	0	8715	1609	56	5	292	5	LCE1C	1	152777887	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	591188	152777887	96472734	19	9588										
DDR2	0	genome.wustl.edu	37	chr1	162729697	162729697	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gactatgtgggctggcggaaCgagagtgccaccaatggcta	15	9	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	162729697	162729697	C	T	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	silent	c.783	p.N261	0.739	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	91	0	0	212	99	31.83	-	-	-	T	162729697	C	T	162729697	2	4	161	1	0	0	0	0	0	0	0	1	4368	535	19	1		1	DDR2	1	162729697	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	9951810	162729697	86520924	20	9589										
PIK3C2B	0	genome.wustl.edu	37	chr1	204401416	204401416	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcttgagagtgtgtgttcggGaggcaaaggagagggtcagc	18	5	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	204401416	204401416	G	C	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.4067	p.S1356C	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	88	0	0	167	80	32.39	-	-	-	C	204401416	G	C	204401416	3	2	161	1	0	0	0	0	1	0	0	0	11984	1174	41	2	865	2	PIK3C2B	1	204401416	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	41671719	204401416	44849205	21	9590										
HSD11B1	0	genome.wustl.edu	37	chr1	209879201	209879201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgtcacaggggccagcaaagGgatcggaagagagatggctt	16	7	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	209879201	209879201	G	T	SNP	HSD11B1	ENST00000261465	human	ensembl	69_37n	1	known	missense	c.134	p.G45V	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD11B1	HGNC	ENSG00000117594	84	0	0	182	71	27.84	-	-	-	T	209879201	G	T	209879201	3	4	161	1	0	0	0	0	1	0	0	0	7426	1232	43	4	140	4	HSD11B1	1	209879201	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	5477785	209879201	39371420	22	9591										
FAM71A	0	genome.wustl.edu	37	chr1	212799050	212799050	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcaacaggggggattaaagaGgcagcagcagcaggggcagc	18	8	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	212799050	212799050	G	C	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	missense	c.831	p.E277D	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	69	0	0	88	15	14.56	-	-	-	C	212799050	G	C	212799050	3	2	161	1	0	0	0	0	1	0	0	0	5652	991	35	4	833	4	FAM71A	1	212799050	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	2919849	212799050	36451571	23	9592										
VASH2	0	genome.wustl.edu	37	chr1	213146056	213146056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggctcattgggcatgagccGcagggctgagctgatggaca	16	9	1	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	213146056	213146056	G	A	SNP	VASH2	ENST00000517399	human	ensembl	69_37n	1	known	missense	c.632	p.R211H	1.000	NULL	NULL	-	no_errors	VASH2	HGNC	ENSG00000143494	67	0	0	156	45	22.39	-	-	-	A	213146056	G	A	213146056	3	1	161	1	0	0	0	0	1	0	0	0	17223	1087	38	1	650	1	VASH2	1	213146056	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	347006	213146056	36104565	24	9593										
MIA3	0	genome.wustl.edu	37	chr1	222802425	222802425	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cgtgaggaattgaaagaggaAttagttcttaaaactcaaaa	9	4	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	222802425	222802425	A	T	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.1863	p.E621D	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	182	0	0	307	227	42.35	-	-	-	T	222802425	A	T	222802425	3	4	161	1	0	0	0	0	1	0	0	0	9636	98	4	5	1877	5	MIA3	1	222802425	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	9656369	222802425	26448196	25	9594										
NID1	0	genome.wustl.edu	37	chr1	236211995	236211995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggaggggagcttaccttgcCtttctggtctgggtccctgc	14	11	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	236211995	236211995	C	G	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.520	p.G174R	1.000	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	31	0	0	42	18	30	-	-	-	G	236211995	C	G	236211995	3	3	161	1	0	0	0	0	1	0	0	0	10486	681	24	4	3299	4	NID1	1	236211995	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	13409570	236211995	13038626	26	9595										
KIF26B	0	genome.wustl.edu	37	chr1	245849668	245849668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcccgaggtgcgtacgccccCggttggaatgagcccccagg	15	15	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	1	245849668	245849668	C	A	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.3383	p.P1128Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	36	0	0	19	5	20.83	-	-	-	A	245849668	C	A	245849668	3	1	161	1	0	0	0	0	1	0	0	0	8347	652	23	3	3429	3	KIF26B	1	245849668	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	9637673	245849668	3400953	27	9596										
STRN	0	genome.wustl.edu	37	chr2	37121173	37121173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aggcaatgcttttttcctaaCaatctaatgaaaaaacatgc	5	8	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	37121173	37121173	C	T	SNP	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	missense	c.799	p.V267I	1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	183	0	0	162	75	31.65	-	-	-	T	37121173	C	T	37121173	3	4	161	1	0	0	0	0	1	0	0	0	15420	478	17	4	1591	4	STRN	2	37121173	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		37121173	206078200	28	9597										
USP34	0	genome.wustl.edu	37	chr2	61528234	61528234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ggggtgggaggcaagatgctGgcagctgaacaccttcccct	15	11	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	61528234	61528234	G	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.3980	p.P1327Q	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	167	0	0	399	141	26.06	-	-	-	T	61528234	G	T	61528234	3	4	161	1	0	0	0	0	1	0	0	0	17162	1348	47	4	6868	4	USP34	2	61528234	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	24407061	61528234	181671139	29	9598										
CD207	0	genome.wustl.edu	37	chr2	71062661	71062661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gacggaggcgaccaggaccaGcgtcaggcagattaatgcag	15	10	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	71062661	71062661	G	A	SNP	CD207	ENST00000410009	human	ensembl	69_37n	-1	known	silent	c.151	p.L51	0.775	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD207	HGNC	ENSG00000116031	31	0	0	36	7	16.28	-	-	-	A	71062661	G	A	71062661	2	1	161	1	0	0	0	0	0	0	0	1	3012	962	34	4		4	CD207	2	71062661	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	9534427	71062661	172136712	30	9599										
DOK1	0	genome.wustl.edu	37	chr2	74783920	74783920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gccccagtccctccccagggCctttatgatctgcctcggga	10	17	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	74783920	74783920	C	T	SNP	DOK1	ENST00000233668	human	ensembl	69_37n	1	known	silent	c.1125	p.G375	0.924	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325	58	0	0	100	20	16.53	-	-	-	T	74783920	C	T	74783920	2	4	161	1	0	0	0	0	0	0	0	1	4731	726	26	4		4	DOK1	2	74783920	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	3721259	74783920	168415453	31	9600										
REG3A	0	genome.wustl.edu	37	chr2	79384383	79384383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acttgcagacatagggtaacCtcacattacagttataatct	6	9	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	79384383	79384383	C	G	SNP	REG3A	ENST00000305165	human	ensembl	69_37n	-1	known	missense	c.497	p.R166T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3A	HGNC	ENSG00000172016	110	0	0	157	53	25.24	-	-	-	G	79384383	C	G	79384383	3	3	161	1	0	0	0	0	1	0	0	0	13295	681	24	4	34	4	REG3A	2	79384383	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	4600463	79384383	163814990	32	9601										
SLC9A4	0	genome.wustl.edu	37	chr2	103095669	103095669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctccgccgtggacccagtgGccgtgctagccgtgtttgag	14	13	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	103095669	103095669	G	T	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	1	known	missense	c.628	p.A210S	1.000	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	42	0	0	59	8	11.94	-	-	-	T	103095669	G	T	103095669	3	4	161	1	0	0	0	0	1	0	0	0	14805	1203	42	4	634	4	SLC9A4	2	103095669	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	23711286	103095669	140103704	33	9602										
ANAPC1	0	genome.wustl.edu	37	chr2	112608454	112608454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gttggacatcgtcagagaggGagctggcagtccaggaataa	15	7	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	112608454	112608454	G	T	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.1549	p.P517T	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	86	0	0	108	23	17.56	-	-	-	T	112608454	G	T	112608454	3	4	161	1	0	0	0	0	1	0	0	0	598	1174	41	2	4425	2	ANAPC1	2	112608454	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	9512785	112608454	130590919	34	9603										
MGAT5	0	genome.wustl.edu	37	chr2	135107491	135107491	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aatggaatctgaaccctcagCagttttataccatgttccgt	7	10	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	135107491	135107491	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	69_37n	1	known	nonsense	c.1228	p.Q410*	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	189	0	0	174	75	30.12	-	-	-	T	135107491	C	T	135107491	4	4	161	1	0	0	0	0	0	1	0	0	9619	711	25	4	1262	4	MGAT5	2	135107491	Nonsense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	22499037	135107491	108091882	35	9604										
TTN	0	genome.wustl.edu	37	chr2	179613547	179613547	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gctttaaatttattgcaatgTtagatgaatctgattcagta	7	4	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	179613547	179613547	T	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.13580	p.N4527S	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	289	0	0	343	40	10.39	-	-	-	C	179613547	T	C	179613547	3	2	161	1	0	0	0	0	1	0	0	0	16832	1725	60	5	96717	5	TTN	2	179613547	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	44506056	179613547	63585826	36	9605										
PMS1	0	genome.wustl.edu	37	chr2	190728500	190728500	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aggctactaaagacttggaaCgatacaatagtcaaatgaag	9	6	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	190728500	190728500	C	G	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.1888	p.R630G	0.999	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	338	0	0	482	110	18.58	-	-	-	G	190728500	C	G	190728500	3	3	161	1	0	0	0	0	1	0	0	0	12216	528	19	3	1922	3	PMS1	2	190728500	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	11114953	190728500	52470873	37	9606										
DNAH7	0	genome.wustl.edu	37	chr2	196682525	196682525	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gctgatcttgcattccctcaGgggttatcatgaagtttaat	9	8	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	196682525	196682525	G	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.9320	p.P3107R	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	83	0	0	90	38	29.69	-	-	-	C	196682525	G	C	196682525	3	2	161	1	0	0	0	0	1	0	0	0	4641	1000	35	4	2818	4	DNAH7	2	196682525	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	5954025	196682525	46516848	38	9607										
HECW2	0	genome.wustl.edu	37	chr2	197189776	197189776	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcctgcccgtggtgggcacaGgtggggaaactgctcttctt	14	11	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	197189776	197189776	G	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	silent	c.669	p.T223	0.991	pfam_C2_Ca-dep,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	177	0	0	286	115	28.61	-	-	-	A	197189776	G	A	197189776	2	1	161	1	0	0	0	0	0	0	0	1	7094	987	35	4		4	HECW2	2	197189776	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	507251	197189776	46009597	39	9608										
PGAP1	0	genome.wustl.edu	37	chr2	197710731	197710731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	catcttgatatctttaggaaGttcagagggtctggaattat	10	5	4	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	197710731	197710731	G	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.2161	p.L721F	1.000	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	88	0	0	163	33	16.84	-	-	-	A	197710731	G	A	197710731	3	1	161	1	0	0	0	0	1	0	0	0	11851	1029	36	4	627	4	PGAP1	2	197710731	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	520955	197710731	45488642	40	9609										
CPS1	0	genome.wustl.edu	37	chr2	211459261	211459261	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gattcctttttctcactgatAaagaaaggaaaagctaccac	6	9	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	2	211459261	211459261	A	G	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.1212	p.I404M	0.942	tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	68	0	0	90	28	23.73	-	-	-	G	211459261	A	G	211459261	3	3	161	1	0	0	0	0	1	0	0	0	3853	352	13	5	1262	5	CPS1	2	211459261	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	13748530	211459261	31740112	41	9610										
CNTN4	0	genome.wustl.edu	37	chr3	3078956	3078956	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccgcacagttgcagccaacgTgattgggattggggagccca	14	11	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	3078956	3078956	T	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.2036	p.V679A	0.099	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	243	1	0.41	526	76	12.62	-	-	-	C	3078956	T	C	3078956	3	2	161	1	0	0	0	0	1	0	0	0	3673	1696	59	5	2094	5	CNTN4	3	3078956	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09		3078956	194943474	42	9611										
C3orf20	0	genome.wustl.edu	37	chr3	14744664	14744664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tagaactacagaagatgtcaGcatgccgcccctgcatcgag	10	12	1	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	14744664	14744664	G	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	missense	c.773	p.S258I	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	110	0	0	119	17	12.5	-	-	-	T	14744664	G	T	14744664	3	4	161	1	0	0	0	0	1	0	0	0	2233	971	34	4	787	4	C3orf20	3	14744664	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	11665708	14744664	183277766	43	9612										
PLCL2	0	genome.wustl.edu	37	chr3	17052777	17052777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agaagtactgggaagtctgtTcctttaatgaagtgcttgcc	11	7	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	17052777	17052777	T	C	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.1561	p.S521P	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	167	0	0	126	47	27.17	-	-	-	C	17052777	T	C	17052777	3	2	161	1	0	0	0	0	1	0	0	0	12114	1783	62	5	1939	5	PLCL2	3	17052777	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	2308113	17052777	180969653	44	9613										
THRB	0	genome.wustl.edu	37	chr3	24169035	24169035	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aaggagggctacttcagtgtCatccaggttgaaagaagaca	12	7	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	24169035	24169035	C	T	SNP	THRB	ENST00000356447	human	ensembl	69_37n	-1	known	missense	c.1099	p.D367N	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090	81	0	0	92	119	56.4	-	-	-	T	24169035	C	T	24169035	3	4	161	1	0	0	0	0	1	0	0	0	15970	826	29	2	294	2	THRB	3	24169035	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	7116258	24169035	173853395	45	9614										
AZI2	0	genome.wustl.edu	37	chr3	28365572	28365572	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttctgattatgttgatccaaGtaatgcagtggtggaaggtt	12	4	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	28365572	28365572	G	A	SNP	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	silent	c.1140	p.Y380	0.960	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	162	0	0	67	86	56.21	-	-	-	A	28365572	G	A	28365572	2	1	161	1	0	0	0	0	0	0	0	1	1245	1024	36	4		4	AZI2	3	28365572	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	4196537	28365572	169656858	46	9615										
SCN10A	0	genome.wustl.edu	37	chr3	38802768	38802768	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttgaggttgcccttgaagagTtgcagccccaccaaggcaaa	11	11	0	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	38802768	38802768	T	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.798	p.Q266H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	61	0	0	72	20	21.74	-	-	-	A	38802768	T	A	38802768	3	1	161	1	0	0	0	0	1	0	0	0	14000	1722	60	5	5160	5	SCN10A	3	38802768	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	10437196	38802768	159219662	47	9616										
SCN11A	0	genome.wustl.edu	37	chr3	38888484	38888484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gccatcagagccaccgagtaCcctagcggtgaaggcgaaaa	12	12	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	38888484	38888484	C	T	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.5077	p.V1693I	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	192	0	0	95	179	65.33	-	-	-	T	38888484	C	T	38888484	3	4	161	1	0	0	0	0	1	0	0	0	14001	507	18	4	302	4	SCN11A	3	38888484	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	85716	38888484	159133946	48	9617										
ABHD5	0	genome.wustl.edu	37	chr3	43740768	43740768	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttttgtttttggtgctctagGtcaggatggctaactggttg	13	5	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	43740768	43740768	G	A	SNP	ABHD5	ENST00000458276	human	ensembl	69_37n	1	known	silent	c.48	p.R16	1.000	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD5	HGNC	ENSG00000011198	38	0	0	80	51	38.93	-	-	-	A	43740768	G	A	43740768	2	1	161	1	0	0	0	0	0	0	0	1	85	1275	44	4		4	ABHD5	3	43740768	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	4852284	43740768	154281662	49	9618										
QARS	0	genome.wustl.edu	37	chr3	49139284	49139285	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttgtggaacttaagggcctINSccccccggagctgctccatc							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	49139284	49139285	-	C	INS	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.E227fs	1.000:1.000	pfam_Gln-tRNA-synth_Ib_RNA-bd_2	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	34	0	0	26	4	13.33	-	-	-	C	49139285	-	C	49139284	7	5	161	1	0	1	1	0	0	0	0	0	12954	1551	54	0	1715	0	QARS	3	49139284	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	5398516	49139284	148883146	50	9619										
MST1	0	genome.wustl.edu	37	chr3	49723823	49723823	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cgctggcaaggtacgcccgcAgtggtggtattggctgtgcc	16	11	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	49723823	49723823	A	G	SNP	MST1	ENST00000428801	human	ensembl	69_37n	-1	known	missense	c.740	p.L247P	0.004	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_PAN-1_domain,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,pfscan_Pan_app,pfscan_Kringle	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MST1	HGNC	ENSG00000173531	9	0	0	1	3	75	-	-	-	G	49723823	A	G	49723823	3	3	161	1	0	0	0	0	1	0	0	0	9962	175	7	5	1282	5	MST1	3	49723823	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	584539	49723823	148298607	51	9620										
CISH	0	genome.wustl.edu	37	chr3	50645365	50645366	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccacatccggaaaggccaggINSatgcgtggcctggacaagca							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	50645365	50645366	-	A	INS	CISH	ENST00000443053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.501_500	p.L168fs	0.997:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	10	0	0	4	5	55.56	-	-	-	A	50645366	-	A	50645365	7	5	161	1	0	1	1	0	0	0	0	0	3467	1164	41	0	330	0	CISH	3	50645365	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	921542	50645365	147377065	52	9621	76	2								
CISH	0	genome.wustl.edu	37	chr3	50645374	50645375	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gaaaggccaggatgcgtggcINSctggacaagcagttggagtc							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	50645374	50645375	-	T	INS	CISH	ENST00000443053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.492_491	p.P165fs	1.000:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	10	0	0	4	5	55.56	-	-	-	T	50645375	-	T	50645374	7	5	161	1	0	1	1	0	0	0	0	0	3467	738	26	0	339	0	CISH	3	50645374	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	9	50645374	147377056	53	9622	76	2								
ATXN7	0	genome.wustl.edu	37	chr3	63965690	63965690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	caaaagcaaaggaggcagtgCaagtggaagcaaccgttctt	12	8	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	63965690	63965690	C	T	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	missense	c.599	p.A200V	0.155	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	210	0	0	139	54	27.98	-	-	-	T	63965690	C	T	63965690	3	4	161	1	0	0	0	0	1	0	0	0	1219	710	25	4	681	4	ATXN7	3	63965690	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	13320316	63965690	134056740	54	9623										
HCLS1	0	genome.wustl.edu	37	chr3	121376169	121376169	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cccctcgatggtcttggctcCccatcgttgctccttttcag	8	16	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	121376169	121376169	C	A	SNP	HCLS1	ENST00000314583	human	ensembl	69_37n	-1	known	nonsense	c.115	p.G39*	1.000	NULL	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	259	0	0	551	77	12.26	-	-	-	A	121376169	C	A	121376169	4	1	161	1	0	0	0	0	0	1	0	0	7046	632	22	4	1393	4	HCLS1	3	121376169	Nonsense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	57410479	121376169	76646261	55	9624										
ADCY5	0	genome.wustl.edu	37	chr3	123015062	123015062	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	caccttggttgcatgctcagGgctgtggggaggtggtggac	18	8	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	123015062	123015062	G	C	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.2932	p.P978A	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	38	0	0	35	12	25.53	-	-	-	C	123015062	G	C	123015062	3	2	161	1	0	0	0	0	1	0	0	0	297	1246	43	4	873	4	ADCY5	3	123015062	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	1638893	123015062	75007368	56	9625										
PLOD2	0	genome.wustl.edu	37	chr3	145794677	145794677	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctattagaaatgtacataaaTacaccctatatgccagaaaa	4	8	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	3	145794677	145794677	T	A	SNP	PLOD2	ENST00000282903	human	ensembl	69_37n	-1	known	silent	c.1569	p.V523	0.975	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	150	0	0	167	33	16.5	-	-	-	A	145794677	T	A	145794677	2	1	161	1	0	0	0	0	0	0	0	1	12176	1393	49	5		5	PLOD2	3	145794677	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	22779615	145794677	52227753	57	9626										
PPP2R2C	0	genome.wustl.edu	37	chr4	6325179	6325179	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctgatgtcatcacgccggcgCttgccccccacgcacacgcg							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	4	6325179	6325179	C	-	DEL	PPP2R2C	ENST00000335585	human	ensembl	69_37n	-1	known	frame_shift_del	c.1194	p.K398fs	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211	13	0	0	8	4	33.33	-	-	-	-	6325179	C	-	6325179	7	5	161	1	0	1	0	1	0	0	0	0	12463	796	28	0	153	0	PPP2R2C	4	6325179	Frame_Shift_Del	DEL	C	TCGA-A8-A06X-01A-21W-A019-09		6325179	184829097	58	9627										
AASDH	0	genome.wustl.edu	37	chr4	57244483	57244483	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctcagaacttatgctttttaTtttttctttttcatatttct							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	4	57244483	57244483	T	-	DEL	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	frame_shift_del	c.499	p.I167fs	0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	79	0	0	220	43	16.1	-	-	-	-	57244483	T	-	57244483	7	5	161	1	0	1	0	1	0	0	0	0	22	1493	52	0	2845	0	AASDH	4	57244483	Frame_Shift_Del	DEL	T	TCGA-A8-A06X-01A-21W-A019-09	50919304	57244483	133909793	59	9628										
ATOH1	0	genome.wustl.edu	37	chr4	94750843	94750843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcaacgcgaccgcagctgggGctcagcaggcttccggaggg	17	13	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	4	94750843	94750843	G	A	SNP	ATOH1	ENST00000306011	human	ensembl	69_37n	1	known	missense	c.766	p.A256T	0.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH1	HGNC	ENSG00000172238	56	0	0	14	16	53.33	-	-	-	A	94750843	G	A	94750843	3	1	161	1	0	0	0	0	1	0	0	0	1116	1203	42	4	768	4	ATOH1	4	94750843	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	37506360	94750843	96403433	60	9629										
POU4F2	0	genome.wustl.edu	37	chr4	147561487	147561487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gctgcatgagcgacgtggacGccgacccgcgggacctggag	17	13	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	4	147561487	147561487	G	T	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.757	p.A253S	1.000	pfam_POU_specific,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	23	0	0	6	10	62.5	-	-	-	T	147561487	G	T	147561487	3	4	161	1	0	0	0	0	1	0	0	0	12352	1087	38	3	763	3	POU4F2	4	147561487	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	52810644	147561487	43592789	61	9630										
GPM6A	0	genome.wustl.edu	37	chr4	176594836	176594836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agagaactaacatacccaagCgctcacacatctgccacaag	6	14	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	4	176594836	176594836	C	T	SNP	GPM6A	ENST00000280187	human	ensembl	69_37n	-1	known	missense	c.382	p.A128T	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC	ENSG00000150625	117	0	0	60	25	29.07	-	-	-	T	176594836	C	T	176594836	3	4	161	1	0	0	0	0	1	0	0	0	6665	768	27	1	474	1	GPM6A	4	176594836	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	29033349	176594836	14559440	62	9631										
PLEKHG4B	0	genome.wustl.edu	37	chr5	151657	151657	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctcctataattcatagtatCttgctgttggtagataaaga	7	6	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	151657	151657	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	silent	c.867	p.I289	0.079	superfamily_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	55	0	0	191	46	19.41	-	-	-	T	151657	C	T	151657	2	4	161	1	0	0	0	0	0	0	0	1	12146	903	32	2		2	PLEKHG4B	5	151657	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		151657	180763603	63	9632										
ZDHHC11	0	genome.wustl.edu	37	chr5	843815	843815	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cagagcatgccagctgtggcCgaggccacagtgctgaagaa	14	11	0	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	843815	843815	C	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	silent	c.528	p.S176	0.590	pfam_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	8	0	0	2	4	66.67	-	-	-	T	843815	C	T	843815	2	4	161	1	0	0	0	0	0	0	0	1	17697	639	23	1		1	ZDHHC11	5	843815	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	692158	843815	180071445	64	9633										
C5orf49	0	genome.wustl.edu	37	chr5	7835545	7835545	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgcatgttctctgtcatctcGgtgcaacttctgatcataat	7	10	5	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	7835545	7835545	G	T	SNP	C5orf49	ENST00000399810	human	ensembl	69_37n	-1	known	silent	c.214	p.R72	1.000	NULL	NULL	-	no_errors	C5orf49	HGNC	ENSG00000215217	119	0	0	234	36	13.28	-	-	-	T	7835545	G	T	7835545	2	4	161	1	0	0	0	0	0	0	0	1	2328	1124	39	3		3	C5orf49	5	7835545	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	6991730	7835545	173079715	65	9634										
CDH12	0	genome.wustl.edu	37	chr5	21975210	21975210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcctactcacccacaggagaCatttctggaacagtagcaac	8	13	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	21975210	21975210	C	A	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.516	p.M172I	1.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	340	1	0.29	365	155	29.81	-	-	-	A	21975210	C	A	21975210	3	1	161	1	0	0	0	0	1	0	0	0	3127	478	17	4	1908	4	CDH12	5	21975210	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	14139665	21975210	158940050	66	9635										
PCDHB12	0	genome.wustl.edu	37	chr5	140588975	140588975	+	Missense_Mutation	SNP	G	G	T													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atttagatgtaggaatcaatGctgtaaaaagctacacaata							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	140588975	140588975	G	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.496	p.A166S	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	169	0	0	99	23	18.85	-	-	-	T	140588975	G	T	140588975	3	4	161	1	0	0	0	0	1	0	0	0	11610	1319	46	4	498	4	PCDHB12	5	140588975	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	118613765	140588975	40326285	67	9636	77	2								
PCDHB12	0	genome.wustl.edu	37	chr5	140588976	140588976	+	Missense_Mutation	SNP	C	C	T													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tttagatgtaggaatcaatgCtgtaaaaagctacacaataa							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	140588976	140588976	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.497	p.A166V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	170	0	0	97	23	19.17	-	-	-	T	140588976	C	T	140588976	3	4	161	1	0	0	0	0	1	0	0	0	11610	797	28	4	499	4	PCDHB12	5	140588976	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	1	140588976	40326284	68	9637	77	2								
PCDHGB3	0	genome.wustl.edu	37	chr5	140750980	140750980	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acagatagatatttcagatgAaaatgacaatgccccggaga	9	7	1	6			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	140750980	140750980	A	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	missense	c.1019	p.E340V	0.997	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	114	0	0	63	19	23.17	-	-	-	T	140750980	A	T	140750980	3	4	161	1	0	0	0	0	1	0	0	0	11637	246	9	5	1021	5	PCDHGB3	5	140750980	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	162004	140750980	40164280	69	9638										
PCDHGA6	0	genome.wustl.edu	37	chr5	140755396	140755396	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gagctggcgccccgctccgcAgagcccggctacctggtgac	14	17	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	140755396	140755396	A	C	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	silent	c.1746	p.A582	0.998	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	72	0	0	36	8	18.18	-	-	-	C	140755396	A	C	140755396	2	2	161	1	0	0	0	0	0	0	0	1	11631	175	7	5		5	PCDHGA6	5	140755396	Silent	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	4416	140755396	40159864	70	9639										
FCHSD1	0	genome.wustl.edu	37	chr5	141025749	141025749	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctgccgcctctgctccagtcGttgcagtacctggttgggaa	12	13	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	5	141025749	141025749	G	A	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	nonsense	c.1054	p.R352*	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	16	0	0	8	8	50	-	-	-	A	141025749	G	A	141025749	4	1	161	1	0	0	0	0	0	1	0	0	5835	1153	40	1	1054	1	FCHSD1	5	141025749	Nonsense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	270353	141025749	39889511	71	9640										
EDN1	0	genome.wustl.edu	37	chr6	12294286	12294286	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gccaatgtgctagccaaaaaGacaagaagtgctggaatttt	10	7	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	12294286	12294286	G	T	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	missense	c.346	p.D116Y	1.000	smart_Endothln-like_toxin	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	180	0	0	184	32	14.81	-	-	-	T	12294286	G	T	12294286	3	4	161	1	0	0	0	0	1	0	0	0	4951	942	33	2	356	2	EDN1	6	12294286	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		12294286	158820781	72	9641										
DST	0	genome.wustl.edu	37	chr6	56394933	56394933	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	accttccaactgacgattccTacaaatgtgccaaaaggtca	6	12	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	56394933	56394933	T	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	splice_site	c.17016-2	e65-2	1.000	-	-	-	no_errors	DST	HGNC	ENSG00000151914	47	0	0	55	12	17.91	-	-	-	C	56394933	T	C	56394933	5	2	161	1	0	0	0	0	0	0	1	0	4818	1536	53	5	6433	5	DST	6	56394933	Splice_Site	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	44100647	56394933	114720134	73	9642										
DST	0	genome.wustl.edu	37	chr6	56438665	56438665	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aacagacttggacagatcctCatatctcccaacaatgtcat	5	12	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	56438665	56438665	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.12955	p.E4319K	0.947	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	81	0	0	128	19	12.84	-	-	-	T	56438665	C	T	56438665	3	4	161	1	0	0	0	0	1	0	0	0	4818	835	29	2	10548	2	DST	6	56438665	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	43732	56438665	114676402	74	9643										
GJA10	0	genome.wustl.edu	37	chr6	90605438	90605438	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ggcagcatgagagagagtggGgtctggatagacagatctcg	17	6	2	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	90605438	90605438	G	T	SNP	GJA10	ENST00000369352	human	ensembl	69_37n	1	known	silent	c.1251	p.G417	0.047	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355	232	0	0	310	40	11.4	-	-	-	T	90605438	G	T	90605438	2	4	161	1	0	0	0	0	0	0	0	1	6453	1219	43	4		4	GJA10	6	90605438	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	34166773	90605438	80509629	75	9644										
ZBTB2	0	genome.wustl.edu	37	chr6	151687437	151687437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gccgtccacacaggtggcagGcatagtactttggaaagctc	12	11	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	151687437	151687437	G	A	SNP	ZBTB2	ENST00000325144	human	ensembl	69_37n	-1	known	missense	c.764	p.A255V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472	85	0	0	162	22	11.89	-	-	-	A	151687437	G	A	151687437	3	1	161	1	0	0	0	0	1	0	0	0	17624	1203	42	4	784	4	ZBTB2	6	151687437	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	61081999	151687437	19427630	76	9645										
C6orf70	0	genome.wustl.edu	37	chr6	170168259	170168259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttcctcttttccttggagagCctgctatggtaagtattagg	10	8	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	6	170168259	170168259	C	T	SNP	C6orf70	ENST00000366773	human	ensembl	69_37n	1	known	missense	c.1051	p.P351S	1.000	NULL	NULL	-	no_errors	C6orf70	HGNC	ENSG00000130023	33	0	0	61	16	20.78	-	-	-	T	170168259	C	T	170168259	3	4	161	1	0	0	0	0	1	0	0	0	2392	739	26	4	1093	4	C6orf70	6	170168259	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	18480822	170168259	946808	77	9646										
AHR	0	genome.wustl.edu	37	chr7	17349613	17349613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aaatccttccaagcggcataGagaccgacttaatacagagt	8	10	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	17349613	17349613	G	C	SNP	AHR	ENST00000242057	human	ensembl	69_37n	1	known	missense	c.119	p.R40T	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHR	HGNC	ENSG00000106546	73	0	0	164	41	20	-	-	-	C	17349613	G	C	17349613	3	2	161	1	0	0	0	0	1	0	0	0	416	942	33	2	125	2	AHR	7	17349613	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		17349613	141789050	78	9647										
PKD1L1	0	genome.wustl.edu	37	chr7	47917120	47917120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atgcagaagacactgaagacGgtgtgtgcttccagaccatg	12	9	0	5			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	47917120	47917120	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	silent	c.3630	p.T1210	0.544	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	44	0	0	58	34	36.96	-	-	-	A	47917120	G	A	47917120	2	1	161	1	0	0	0	0	0	0	0	1	12038	1103	39	1		1	PKD1L1	7	47917120	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	30567507	47917120	111221543	79	9648										
PKD1L1	0	genome.wustl.edu	37	chr7	47921626	47921626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccaccaggttatccccatctCcagggctctcctcggcactc	7	19	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	47921626	47921626	C	G	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.3323	p.G1108A	0.002	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	30	0	0	71	10	12.35	-	-	-	G	47921626	C	G	47921626	3	3	161	1	0	0	0	0	1	0	0	0	12038	855	30	2	5378	2	PKD1L1	7	47921626	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	4506	47921626	111217037	80	9649										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74212296	74212298	+	In_Frame_Del	DEL	GGG	GGG	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aggctgcacgggggatttctGggttggacttgggtgtgcaa							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	GGG	GGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	74212296	74212298	GGG	-	DEL	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	in_frame_del	c.1555_1553	p.TQ518in_frame_delK	0.000:0.000:0.000	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	29	0	0	28	21	42.86	-	-	-	-	74212298	GGG	-	74212296	7	5	161	1	0	1	0	1	0	0	0	0	6920	1357	47	0	1298	0	GTF2IRD2	7	74212296	In_Frame_Del	DEL	GGG	TCGA-A8-A06X-01A-21W-A019-09	26290670	74212296	84926367	81	9650										
PCLO	0	genome.wustl.edu	37	chr7	82545243	82545243	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atattggactgcttgccatgCtacttctttcctccaaacct	5	13	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	82545243	82545243	C	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.12059	p.S4020I	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	287	0	0	266	154	36.67	-	-	-	A	82545243	C	A	82545243	3	1	161	1	0	0	0	0	1	0	0	0	11656	797	28	4	3462	4	PCLO	7	82545243	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	8332947	82545243	76593420	82	9651										
SEMA3A	0	genome.wustl.edu	37	chr7	83675755	83675755	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcagttccagagtataattcTccatctgtgttgtgacaaaa	8	8	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	83675755	83675755	T	G	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	silent	c.552	p.G184	0.999	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	176	0	0	222	169	43.22	-	-	-	G	83675755	T	G	83675755	2	3	161	1	0	0	0	0	0	0	0	1	14112	1538	54	5		5	SEMA3A	7	83675755	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	1130512	83675755	75462908	83	9652										
TFPI2	0	genome.wustl.edu	37	chr7	93519536	93519536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcccccgtacaggaactggcGgcagctctgcgtgtacctgt	13	14	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	93519536	93519536	G	A	SNP	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	missense	c.184	p.R62C	0.629	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	57	0	0	24	11	31.43	-	-	-	A	93519536	G	A	93519536	3	1	161	1	0	0	0	0	1	0	0	0	15904	1116	39	1	539	1	TFPI2	7	93519536	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	9843781	93519536	65619127	84	9653										
TRIM56	0	genome.wustl.edu	37	chr7	100732118	100732118	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctggagacaagcggtcccccCggatcaccgggctctgtccc	12	17	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	100732118	100732118	C	G	SNP	TRIM56	ENST00000306085	human	ensembl	69_37n	1	known	missense	c.1525	p.R509G	0.659	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871	45	0	0	31	13	29.55	-	-	-	G	100732118	C	G	100732118	3	3	161	1	0	0	0	0	1	0	0	0	16626	643	23	3	1527	3	TRIM56	7	100732118	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	7212582	100732118	58406545	85	9654										
MET	0	genome.wustl.edu	37	chr7	116339812	116339812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gctaaaggaaacgaaagatgGttttatgtttttgacggacc	11	5	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	116339812	116339812	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.674	p.G225D	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	246	0	0	257	254	49.51	-	-	-	A	116339812	G	A	116339812	3	1	161	1	0	0	0	0	1	0	0	0	9556	1261	44	4	676	4	MET	7	116339812	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	15607694	116339812	42798851	86	9655										
PLXNA4	0	genome.wustl.edu	37	chr7	131982949	131982949	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acctgcaccgtctcatactgGagggcgttgcccctgggtcc	12	15	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	131982949	131982949	G	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.1404	p.L468	0.967	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	42	0	0	61	12	16.44	-	-	-	T	131982949	G	T	131982949	2	4	161	1	0	0	0	0	0	0	0	1	12196	1161	41	2		2	PLXNA4	7	131982949	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	15643137	131982949	27155714	87	9656										
OR9A4	0	genome.wustl.edu	37	chr7	141618801	141618801	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gtgacattaatgggaaacacAgtcatcatcatgattgtctg	9	7	4	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	141618801	141618801	A	T	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	silent	c.126	p.T42	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	507	1	0.2	597	149	19.95	-	-	-	T	141618801	A	T	141618801	2	4	161	1	0	0	0	0	0	0	0	1	11322	175	7	5		5	OR9A4	7	141618801	Silent	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	9635852	141618801	17519862	88	9657										
ZNF398	0	genome.wustl.edu	37	chr7	148876070	148876070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tagccatgctactgagcaccCcttaccctgtgcccagtgcc	8	17	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	148876070	148876070	C	A	SNP	ZNF398	ENST00000540950	human	ensembl	69_37n	1	known	missense	c.1121	p.P374H	0.706	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024	145	0	0	265	80	23.19	-	-	-	A	148876070	C	A	148876070	3	1	161	1	0	0	0	0	1	0	0	0	17981	623	22	4	1128	4	ZNF398	7	148876070	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	7257269	148876070	10262593	89	9658										
MLL3	0	genome.wustl.edu	37	chr7	151855984	151855985	+	In_Frame_Ins	INS	-	-	TCT													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acgtgtcagtgctagagtacINSatagcttgtttctcctcttc							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	7	151855984	151855985	-	TCT	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	in_frame_ins	c.11634_11633	p.M3878in_frame_insIE	0.970:0.965	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	348	0	0	214	193	47.42	-	-	-	TCT	151855985	-	TCT	151855984	7	5	161	1	0	1	1	0	0	0	0	0	9693	478	17	0	3165	0	MLL3	7	151855984	In_Frame_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	2979914	151855984	7282679	90	9659										
XPO7	0	genome.wustl.edu	37	chr8	21842351	21842351	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ggacattgcagtgcaggaggGtgagtgtgcagcgtgctggg	20	6	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	21842351	21842351	G	A	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	splice_site	c.1498+1	e12+1	1.000	-	-	-	no_errors	XPO7	HGNC	ENSG00000130227	40	0	0	24	9	27.27	-	-	-	A	21842351	G	A	21842351	5	1	161	1	0	0	0	0	0	0	1	0	17546	1275	44	4	1570	4	XPO7	8	21842351	Splice_Site	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		21842351	124521671	91	9660										
PLAT	0	genome.wustl.edu	37	chr8	42050632	42050632	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cagggatcctgcacaccaacCtggctgggcgaaacgaagac	12	13	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	42050632	42050632	C	G	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.72	p.Q24H	1.000	NULL	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	22	0	0	39	10	20.41	-	-	-	G	42050632	C	G	42050632	3	3	161	1	0	0	0	0	1	0	0	0	12095	695	24	4	1668	4	PLAT	8	42050632	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	20208281	42050632	104313390	92	9661										
RP1	0	genome.wustl.edu	37	chr8	55538958	55538958	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tttttatgcaccgcaatctcAagcagaagtggcatctgggt	10	9	2	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	55538958	55538958	A	C	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.2516	p.Q839P	0.033	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	128	0	0	115	24	17.27	-	-	-	C	55538958	A	C	55538958	3	2	161	1	0	0	0	0	1	0	0	0	13618	130	5	5	2526	5	RP1	8	55538958	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	13488326	55538958	90825064	93	9662										
PENK	0	genome.wustl.edu	37	chr8	57354286	57354286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttctggctccatgggataaaGctcatccattttcttcatga	7	10	4	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	57354286	57354286	G	T	SNP	PENK	ENST00000314922	human	ensembl	69_37n	-1	known	missense	c.349	p.L117I	1.000	prints_Proenkphlin_A	pfam_Opioid_neupept,prints_Proenkphlin_A,prints_Opioid_neupept	-	no_errors	PENK	HGNC	ENSG00000181195	144	0	0	92	58	38.67	-	-	-	T	57354286	G	T	57354286	3	4	161	1	0	0	0	0	1	0	0	0	11800	971	34	4	458	4	PENK	8	57354286	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	1815328	57354286	89009736	94	9663										
KCNV1	0	genome.wustl.edu	37	chr8	110984688	110984688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gaagcgacacctgtcccgcaCacacaggaagcggaggacaa	12	13	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	110984688	110984688	C	A	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.790	p.V264L	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	82	0	0	66	10	13.16	-	-	-	A	110984688	C	A	110984688	3	1	161	1	0	0	0	0	1	0	0	0	8148	478	17	4	720	4	KCNV1	8	110984688	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	53630402	110984688	35379334	95	9664										
CSMD3	0	genome.wustl.edu	37	chr8	113237153	113237153	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cctgtatactgtgttttaggTgcagtcctgttgatgagaac	11	7	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	113237153	113237153	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.10971	p.A3657	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	140	0	0	209	42	16.73	-	-	-	G	113237153	T	G	113237153	2	3	161	1	0	0	0	0	0	0	0	1	3978	1683	59	5		5	CSMD3	8	113237153	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	2252465	113237153	33126869	96	9665										
ATAD2	0	genome.wustl.edu	37	chr8	124360463	124360463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcttctaaaaatgtgtccagTggtttgggattccaatccct	8	9	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	124360463	124360463	T	C	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	silent	c.1857	p.P619	0.370	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	88	0	0	67	18	20.93	-	-	-	C	124360463	T	C	124360463	2	2	161	1	0	0	0	0	0	0	0	1	1075	1683	59	5		5	ATAD2	8	124360463	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	11123310	124360463	22003559	97	9666										
ADCY8	0	genome.wustl.edu	37	chr8	131792944	131792944	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttcacatagatctcccctcGgtaatcaaaggcaaagccct	6	14	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	8	131792944	131792944	G	T	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	silent	c.3448	p.R1150	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	249	0	0	275	52	15.85	-	-	-	T	131792944	G	T	131792944	2	4	161	1	0	0	0	0	0	0	0	1	300	1124	39	3		3	ADCY8	8	131792944	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	7432481	131792944	14571078	98	9667										
IFNE	0	genome.wustl.edu	37	chr9	21481118	21481118	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcttgcttcatgtcgttcaaGggtcttccttgtttgctcag	9	10	5	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	9	21481118	21481118	G	A	SNP	IFNE	ENST00000448696	human	ensembl	69_37n	-1	known	silent	c.576	p.P192	0.105	NULL	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNE	HGNC	ENSG00000184995	155	0	0	242	49	16.84	-	-	-	A	21481118	G	A	21481118	2	1	161	1	0	0	0	0	0	0	0	1	7601	987	35	4		4	IFNE	9	21481118	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		21481118	119732313	99	9668										
CDK20	0	genome.wustl.edu	37	chr9	90582115	90582115	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cagagctcactgtcctgatgGgtacgtcagtagcacacaga	11	11	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	9	90582115	90582115	G	C	SNP	CDK20	ENST00000459720	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDK20	HGNC	ENSG00000156345	13	0	0	11	4	26.67	-	-	-	C	90582115	G	C	90582115	1	2	161	0	1	0	0	0	0	0	0	0	3166	1247	43	4		4	CDK20	9	90582115	RNA	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	69100997	90582115	50631316	100	9669										
ABCA1	0	genome.wustl.edu	37	chr9	107589387	107589387	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcactgcaggattgtcaccaCagcaaacacggacaggaaga	11	11	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	9	107589387	107589387	C	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.2179	p.V727L	0.806	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	79	0	0	29	37	56.06	-	-	-	A	107589387	C	A	107589387	3	1	161	1	0	0	0	0	1	0	0	0	28	478	17	4	4746	4	ABCA1	9	107589387	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	17007272	107589387	33624044	101	9670										
TAF3	0	genome.wustl.edu	37	chr10	8005972	8005972	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aagatgatgaattggaggagGaagaaattattaatgatgag	13	0	0	6			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	8005972	8005972	G	T	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	nonsense	c.499	p.E167*	1.000	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	142	0	0	227	68	22.97	-	-	-	T	8005972	G	T	8005972	4	4	161	1	0	0	0	0	0	1	0	0	15617	1175	41	2	509	2	TAF3	10	8005972	Nonsense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		8005972	127528775	102	9671										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	37	0	0	81	115	58.67	-	-	-	G	8111514	-	G	8111513	7	5	161	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	105541	8111513	127423234	103	9672										
FAM171A1	0	genome.wustl.edu	37	chr10	15255094	15255094	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cgtctggtcgtctcctcctgCaggctgggcagctggccacc	13	16	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	15255094	15255094	C	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	silent	c.2493	p.L831	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	64	0	0	60	10	14.29	-	-	-	A	15255094	C	A	15255094	2	1	161	1	0	0	0	0	0	0	0	1	5530	697	25	4		4	FAM171A1	10	15255094	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	7143581	15255094	120279653	104	9673										
ANKRD26	0	genome.wustl.edu	37	chr10	27326984	27326984	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttcttggtttaagctaaatCtgcagttaaatatgtttatc	6	6	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	27326984	27326984	C	G	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	splice_site	c.2424-1	e22-1	1.000	-	-	-	no_errors	ANKRD26	HGNC	ENSG00000107890	100	0	0	118	17	12.59	-	-	-	G	27326984	C	G	27326984	5	3	161	1	0	0	0	0	0	0	1	0	654	927	32	2	2809	2	ANKRD26	10	27326984	Splice_Site	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	12071890	27326984	108207763	105	9674										
WAC	0	genome.wustl.edu	37	chr10	28897337	28897337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcagcttaataattctaatgTggacatatctaaaataaatg	6	5	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	28897337	28897337	T	C	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.1142	p.V381A	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	79	0	0	66	74	52.86	-	-	-	C	28897337	T	C	28897337	3	2	161	1	0	0	0	0	1	0	0	0	17344	1696	59	5	1172	5	WAC	10	28897337	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	1570353	28897337	106637410	106	9675										
FAM21B	0	genome.wustl.edu	37	chr10	47946862	47946862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctcagaaaaccagagagaaGgagaaaacattggaatctaa	9	6	2	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	47946862	47946862	G	A	SNP	FAM21B	ENST00000358474	human	ensembl	69_37n	1	known	silent	c.3498	p.K1166	1.000	NULL	NULL	-	no_errors	FAM21B	HGNC	ENSG00000152726	17	0	0	11	4	26.67	-	-	-	A	47946862	G	A	47946862	2	1	161	1	0	0	0	0	0	0	0	1	5583	991	35	4		4	FAM21B	10	47946862	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	19049525	47946862	87587885	107	9676										
TNKS2	0	genome.wustl.edu	37	chr10	93579042	93579042	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cacaggtgaatataagaaagAtgaactcttagaaagtgcca	9	6	1	5			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	93579042	93579042	A	T	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	missense	c.536	p.D179V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	47	0	0	48	25	34.25	-	-	-	T	93579042	A	T	93579042	3	4	161	1	0	0	0	0	1	0	0	0	16416	333	12	5	550	5	TNKS2	10	93579042	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	45632180	93579042	41955705	108	9677										
PI4K2A	0	genome.wustl.edu	37	chr10	99361620	99361621	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttacttcgtgcaggagctgtINSggggggcgtctgcgccctgg							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	99361620	99361621	-	G	INS	PI4K2A	ENST00000555577	human	ensembl	69_37n	1	known	frame_shift_ins	c.218_219	p.V76fs	1.000:0.996	NULL	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	23	0	0	13	3	18.75	-	-	-	G	99361621	-	G	99361620	7	5	161	1	0	1	1	0	0	0	0	0	11945	1696	59	0		0	PI4K2A	10	99361620	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	5782578	99361620	36173127	109	9678										
CCDC147	0	genome.wustl.edu	37	chr10	106214245	106214245	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	accaaatggtcctggttttaCtgggggcggatttcctctca	11	10	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	10	106214245	106214245	C	G	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.2576	p.T859S	0.735	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	167	0	0	234	42	15.22	-	-	-	G	106214245	C	G	106214245	3	3	161	1	0	0	0	0	1	0	0	0	2806	565	20	4	2646	4	CCDC147	10	106214245	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	6852625	106214245	29320502	110	9679										
MUC5B	0	genome.wustl.edu	37	chr11	1272402	1272402	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctgtggaccacgtggaccgtCccagcacagaccaccacacc	9	18	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	1272402	1272402	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.14301	p.V4767	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	39	0	0	15	28	63.64	-	-	-	A	1272402	C	A	1272402	2	1	161	1	0	0	0	0	0	0	0	1	10051	842	30	2		2	MUC5B	11	1272402	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		1272402	133734114	111	9680										
FEN1	0	genome.wustl.edu	37	chr11	61563621	61563621	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cgaggagatcgtgcggcgacTtgaccccaacaagtaccctg	12	13	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	61563621	61563621	T	A	SNP	FEN1	ENST00000305885	human	ensembl	69_37n	1	known	missense	c.788	p.L263H	0.991	superfamily_5-3_exonuclease_C	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	FEN1	HGNC	ENSG00000168496	46	0	0	21	11	34.38	-	-	-	A	61563621	T	A	61563621	3	1	161	1	0	0	0	0	1	0	0	0	5858	1609	56	5	790	5	FEN1	11	61563621	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	60291219	61563621	73442895	112	9681										
CPT1A	0	genome.wustl.edu	37	chr11	68566804	68566804	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agtcttcttccttcataagaGgcctcaccgactgtagatac	7	12	4	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	68566804	68566804	G	C	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	missense	c.575	p.P192R	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	71	0	0	71	56	44.09	-	-	-	C	68566804	G	C	68566804	3	2	161	1	0	0	0	0	1	0	0	0	3861	1000	35	4	1842	4	CPT1A	11	68566804	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	7003183	68566804	66439712	113	9682										
MYO7A	0	genome.wustl.edu	37	chr11	76870558	76870558	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	catcgctggccacagctgcaTccctgcttgaggtcagtgcc	11	15	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	76870558	76870558	T	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.1069	p.S357T	0.015	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	28	0	0	33	7	17.5	-	-	-	A	76870558	T	A	76870558	3	1	161	1	0	0	0	0	1	0	0	0	10154	1435	50	5	1103	5	MYO7A	11	76870558	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	8303754	76870558	58135958	114	9683										
GAB2	0	genome.wustl.edu	37	chr11	77991673	77991673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctcctcagcctgattgaagCcacagatctggcagatgctc	9	13	3	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	77991673	77991673	C	T	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	missense	c.350	p.G117D	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	382	0	0	567	70	10.97	-	-	-	T	77991673	C	T	77991673	3	4	161	1	0	0	0	0	1	0	0	0	6198	739	26	4	1716	4	GAB2	11	77991673	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	1121115	77991673	57014843	115	9684										
NOX4	0	genome.wustl.edu	37	chr11	89073285	89073285	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	caacggaaggactggatatcTctgcatacccaaataaagta	8	9	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	89073285	89073285	T	C	SNP	NOX4	ENST00000413594	human	ensembl	69_37n	-1	known	silent	c.1455	p.R485	1.000	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	187	0	0	144	102	41.13	-	-	-	C	89073285	T	C	89073285	2	2	161	1	0	0	0	0	0	0	0	1	10630	1548	54	5		5	NOX4	11	89073285	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	11081612	89073285	45933231	116	9685										
ATM	0	genome.wustl.edu	37	chr11	108119728	108119728	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	actacacaaagagaatctagTgattacagtgtcccttgcaa	7	9	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	108119728	108119728	T	G	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.1134	p.S378R	0.011	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	93	0	0	105	42	28.57	-	-	-	G	108119728	T	G	108119728	3	3	161	1	0	0	0	0	1	0	0	0	1113	1693	59	5	1164	5	ATM	11	108119728	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	19046443	108119728	26886788	117	9686										
ARHGAP20	0	genome.wustl.edu	37	chr11	110450859	110450859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gaagtgcctggggaggataaGctggaatagctggtccttgg	17	6	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	110450859	110450859	G	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.2811	p.S937R	0.997	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	114	0	0	119	25	17.24	-	-	-	T	110450859	G	T	110450859	3	4	161	1	0	0	0	0	1	0	0	0	872	962	34	4	768	4	ARHGAP20	11	110450859	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	2331131	110450859	24555657	118	9687										
OR8B12	0	genome.wustl.edu	37	chr11	124412711	124412711	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aatgggtttaacacggggacTattatggtatagaacaggga	13	4	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	11	124412711	124412711	T	A	SNP	OR8B12	ENST00000306842	human	ensembl	69_37n	-1	known	silent	c.840	p.I280	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B12	HGNC	ENSG00000170953	124	0	0	123	34	21.52	-	-	-	A	124412711	T	A	124412711	2	1	161	1	0	0	0	0	0	0	0	1	11299	1512	53	5		5	OR8B12	11	124412711	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	13961852	124412711	10593805	119	9688										
FGF23	0	genome.wustl.edu	37	chr12	4479691	4479691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccgggcccggggcttcagcaCgttcagggggtcccgctccg	16	16	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	4479691	4479691	C	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	missense	c.574	p.V192M	0.943	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	31	0	0	22	15	40.54	-	-	-	T	4479691	C	T	4479691	3	4	161	1	0	0	0	0	1	0	0	0	5898	536	19	1	185	1	FGF23	12	4479691	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		4479691	129372204	120	9689										
TPI1	0	genome.wustl.edu	37	chr12	6979542	6979542	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggacatcatcaatgccaaaCaatgagccccatccatcttc	5	14	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	6979542	6979542	C	A	SNP	TPI1	ENST00000229270	human	ensembl	69_37n	1	known	missense	c.856	p.Q286K	1.000	NULL	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669	32	0	0	40	50	55.56	-	-	-	A	6979542	C	A	6979542	3	1	161	1	0	0	0	0	1	0	0	0	16499	479	17	4	882	4	TPI1	12	6979542	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	2499851	6979542	126872353	121	9690										
TMTC1	0	genome.wustl.edu	37	chr12	29904777	29904777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ggggctcccgggctgctgtgGgctgcgtggacagagggccc	20	12	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	29904777	29904777	G	T	SNP	TMTC1	ENST00000256062	human	ensembl	69_37n	-1	known	missense	c.436	p.P146T	0.004	NULL	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	25	0	0	25	19	43.18	-	-	-	T	29904777	G	T	29904777	3	4	161	1	0	0	0	0	1	0	0	0	16355	1232	43	4	1944	4	TMTC1	12	29904777	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	22925235	29904777	103947118	122	9691										
ADAMTS20	0	genome.wustl.edu	37	chr12	43821169	43821169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctggaccacattgctgtaacTctggaggcttggaggctgca	13	10	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	43821169	43821169	T	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.4049	p.E1350A	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	78	0	0	76	12	13.64	-	-	-	G	43821169	T	G	43821169	3	3	161	1	0	0	0	0	1	0	0	0	266	1551	54	5	1734	5	ADAMTS20	12	43821169	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	13916392	43821169	90030726	123	9692										
KRT77	0	genome.wustl.edu	37	chr12	53086263	53086263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gatctccacatccagggacaGcttgacccccagcatggcct	9	16	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	53086263	53086263	G	A	SNP	KRT77	ENST00000341809	human	ensembl	69_37n	-1	known	silent	c.1369	p.L457	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182	80	0	0	110	23	17.29	-	-	-	A	53086263	G	A	53086263	2	1	161	1	0	0	0	0	0	0	0	1	8543	962	34	4		4	KRT77	12	53086263	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	9265094	53086263	80765632	124	9693										
DEPDC4	0	genome.wustl.edu	37	chr12	100660825	100660825	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gtcaaaagaaccgccataagCtcgcgcgctggctcctcccc	9	17	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	100660825	100660825	C	T	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	silent	c.30	p.E10	0.001	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	56	0	0	69	13	15.85	-	-	-	T	100660825	C	T	100660825	2	4	161	1	0	0	0	0	0	0	0	1	4477	796	28	4		4	DEPDC4	12	100660825	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	47574562	100660825	33191070	125	9694										
CMKLR1	0	genome.wustl.edu	37	chr12	108685671	108685671	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agtcctctcattcattgatgAcatcttggtaaagcttctat	6	9	4	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	108685671	108685671	A	T	SNP	CMKLR1	ENST00000312143	human	ensembl	69_37n	-1	known	missense	c.1069	p.S357T	1.000	prints_DEZorph_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_DEZorph_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	114	0	0	107	18	14.4	-	-	-	T	108685671	A	T	108685671	3	4	161	1	0	0	0	0	1	0	0	0	3609	275	10	5	56	5	CMKLR1	12	108685671	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	8024846	108685671	25166224	126	9695										
WDR66	0	genome.wustl.edu	37	chr12	122404947	122404947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	catggcggagctacagaaacGctacttggtgtttattaaca	10	8	0	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	122404947	122404947	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.2579	p.R860H	0.981	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	41	0	0	16	8	33.33	-	-	-	A	122404947	G	A	122404947	3	1	161	1	0	0	0	0	1	0	0	0	17414	1087	38	1	2637	1	WDR66	12	122404947	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	13719276	122404947	11446948	127	9696										
PIWIL1	0	genome.wustl.edu	37	chr12	130839517	130839517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aactccagagcaaaggcagcGtgaagtgggacgactcattg	13	9	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	130839517	130839517	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.1256	p.R419H	0.907	superfamily_RNaseH-like_dom,superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	339	0	0	580	102	14.96	-	-	-	A	130839517	G	A	130839517	3	1	161	1	0	0	0	0	1	0	0	0	12031	1145	40	1	1294	1	PIWIL1	12	130839517	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	8434570	130839517	3012378	128	9697										
ULK1	0	genome.wustl.edu	37	chr12	132391450	132391452	+	In_Frame_Del	DEL	CTG	CTG	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttgcaggaaatggctaattCtgtctacctggttatggagg							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	12	132391450	132391452	CTG	-	DEL	ULK1	ENST00000321867	human	ensembl	69_37n	1	known	in_frame_del	c.260_262	p.SV87in_frame_delF	0.996:0.667:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	13	0	0	20	26	56.52	-	-	-	-	132391452	CTG	-	132391450	7	5	161	1	0	1	0	1	0	0	0	0	17072	913	32	0	274	0	ULK1	12	132391450	In_Frame_Del	DEL	CTG	TCGA-A8-A06X-01A-21W-A019-09	1551933	132391450	1460445	129	9698										
ITGBL1	0	genome.wustl.edu	37	chr13	102220051	102220051	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gatgttgttcaatccccaggCcatggtaagtgtgactgtgg	13	8	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	13	102220051	102220051	C	G	SNP	ITGBL1	ENST00000376180	human	ensembl	69_37n	1	known	silent	c.318	p.G106	1.000	pfam_EGF_extracell,smart_EGF-like	pfam_EGF_extracell,smart_EGF-like	-	no_errors	ITGBL1	HGNC	ENSG00000198542	235	0	0	323	39	10.74	-	-	-	G	102220051	C	G	102220051	2	3	161	1	0	0	0	0	0	0	0	1	7956	753	26	4		4	ITGBL1	13	102220051	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		102220051	12949827	130	9699										
GRTP1	0	genome.wustl.edu	37	chr13	114009727	114009727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctggtccatctgcgcctggGccccactcagcaccatccag	9	18	3	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	13	114009727	114009727	G	T	SNP	GRTP1	ENST00000375430	human	ensembl	69_37n	-1	known	missense	c.251	p.A84D	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	GRTP1	HGNC	ENSG00000139835	9	0	0	8	5	38.46	-	-	-	T	114009727	G	T	114009727	3	4	161	1	0	0	0	0	1	0	0	0	6861	1203	42	4	783	4	GRTP1	13	114009727	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	11789676	114009727	1160151	131	9700										
POTEG	0	genome.wustl.edu	37	chr14	19558994	19558994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggtgtaatactgacaggccGtacaatgccgggaagatgaa	13	7	0	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	19558994	19558994	G	A	SNP	POTEG	ENST00000409832	human	ensembl	69_37n	1	known	missense	c.640	p.V214I	0.835	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036	79	0	0	16	3	15	-	-	-	A	19558994	G	A	19558994	3	1	161	1	0	0	0	0	1	0	0	0	12340	1145	40	1	650	1	POTEG	14	19558994	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		19558994	87790546	132	9701										
CTSG	0	genome.wustl.edu	37	chr14	25043693	25043693	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cacgtttcgattccgtctgaCtcttctgctcagctggagga	10	12	4	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	25043693	25043693	C	A	SNP	CTSG	ENST00000216336	human	ensembl	69_37n	-1	known	missense	c.352	p.V118F	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448	87	0	0	61	21	25.3	-	-	-	A	25043693	C	A	25043693	3	1	161	1	0	0	0	0	1	0	0	0	4067	565	20	4	423	4	CTSG	14	25043693	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	5484699	25043693	82305847	133	9702										
SYNE2	0	genome.wustl.edu	37	chr14	64445702	64445702	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	attaaatatgggagcagagaAtctgtggaattattgctgga	12	3	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	64445702	64445702	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.1539	p.E513D	0.992	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	128	0	0	140	53	27.18	-	-	-	C	64445702	A	C	64445702	3	2	161	1	0	0	0	0	1	0	0	0	15538	98	4	5	1589	5	SYNE2	14	64445702	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	39402009	64445702	42903838	134	9703										
CHGA	0	genome.wustl.edu	37	chr14	93392991	93392991	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gtcatctccgacacactttcCaagcccagccccatgcctgt	6	18	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	93392991	93392991	C	A	SNP	CHGA	ENST00000216492	human	ensembl	69_37n	1	known	silent	c.135	p.S45	1.000	pfam_Granin,prints_Chromogranin_AB	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGA	HGNC	ENSG00000100604	13	0	0	9	8	47.06	-	-	-	A	93392991	C	A	93392991	2	1	161	1	0	0	0	0	0	0	0	1	3367	581	21	4		4	CHGA	14	93392991	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	28947289	93392991	13956549	135	9704										
BDKRB2	0	genome.wustl.edu	37	chr14	96707447	96707448	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gagatgcagaagttcaaggaINSgatccagacagagaggaggg							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	96707447	96707448	-	T	INS	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	frame_shift_ins	c.782_783	p.E261fs	1.000:0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	48	0	0	29	33	53.23	-	-	-	T	96707448	-	T	96707447	7	5	161	1	0	1	1	0	0	0	0	0	1397	304	11	0	788	0	BDKRB2	14	96707447	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	3314456	96707447	10642093	136	9705										
BDKRB1	0	genome.wustl.edu	37	chr14	96730334	96730334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aaccagtttaactggcctttCggagccctcctctgccgtgt	9	14	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	96730334	96730334	C	G	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	1	known	missense	c.315	p.F105L	0.975	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	40	0	0	84	12	12.5	-	-	-	G	96730334	C	G	96730334	3	3	161	1	0	0	0	0	1	0	0	0	1396	883	31	3	317	3	BDKRB1	14	96730334	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	22887	96730334	10619206	137	9706										
AKT1	0	genome.wustl.edu	37	chr14	105238714	105238714	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agccgcaccttcttctcgtaCacgtgctgccacacgatacc	7	17	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	14	105238714	105238714	C	A	SNP	AKT1	ENST00000349310	human	ensembl	69_37n	-1	known	silent	c.1248	p.V416	0.993	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT1	HGNC	ENSG00000142208	21	0	0	5	12	70.59	-	-	-	A	105238714	C	A	105238714	2	1	161	1	0	0	0	0	0	0	0	1	478	465	17	4		4	AKT1	14	105238714	Silent	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	8508380	105238714	2110826	138	9707										
PLCB2	0	genome.wustl.edu	37	chr15	40589083	40589083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttgcccctgagatcctcaggGctgggcagggggacacctgg	16	12	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	15	40589083	40589083	G	T	SNP	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	missense	c.1350	p.S450R	0.996	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	43	0	0	34	18	33.96	-	-	-	T	40589083	G	T	40589083	3	4	161	1	0	0	0	0	1	0	0	0	12102	1194	42	4	2283	4	PLCB2	15	40589083	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		40589083	61942309	139	9708										
SPINT1	0	genome.wustl.edu	37	chr15	41148157	41148157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccgcgctggtactacaacccCttcagcgaacactgcgcccg	9	18	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	15	41148157	41148157	C	T	SNP	SPINT1	ENST00000566928	human	ensembl	69_37n	1	novel	missense	c.512	p.P171L	0.929	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_PKD_dom,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	pseudogene	SPINT1	HGNC	ENSG00000166145	66	0	0	71	25	26.04	-	-	-	T	41148157	C	T	41148157	3	4	161	1	0	0	0	0	1	0	0	0	15159	668	24	4	1263	4	SPINT1	15	41148157	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	559074	41148157	61383235	140	9709										
MEGF11	0	genome.wustl.edu	37	chr15	66416295	66416295	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gcatcgtgtgtaatagatctGatcgaaggggtgtgcatacg	14	6	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	15	66416295	66416295	G	C	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.142	p.Q48E	1.000	pfscan_EMI_domain	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	42	0	0	42	10	19.23	-	-	-	C	66416295	G	C	66416295	3	2	161	1	0	0	0	0	1	0	0	0	9532	1299	45	2	3076	2	MEGF11	15	66416295	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	25268138	66416295	36115097	141	9710										
ADAMTS7	0	genome.wustl.edu	37	chr15	79064140	79064140	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggatgcggatctcgcgtgcGcccgctgggatcagccccac	14	15	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	15	79064140	79064140	G	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	silent	c.2163	p.G721	0.039	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	20	0	0	23	9	28.12	-	-	-	T	79064140	G	T	79064140	2	4	161	1	0	0	0	0	0	0	0	1	271	1074	38	3		3	ADAMTS7	15	79064140	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	12647845	79064140	23467252	142	9711										
ADAMTS17	0	genome.wustl.edu	37	chr15	100739614	100739614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttagcactgcacacacctcCtaagtaagcaattcctgcag	6	14	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	15	100739614	100739614	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.1090	p.G364R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	81	0	0	91	14	13.21	-	-	-	T	100739614	C	T	100739614	3	4	161	1	0	0	0	0	1	0	0	0	262	690	24	4	2257	4	ADAMTS17	15	100739614	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	21675474	100739614	1791778	143	9712										
ABCA3	0	genome.wustl.edu	37	chr16	2369601	2369601	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccttcagcctcctttccttcTcctgcacgacagcacgggca							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	2369601	2369601	T	-	DEL	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	frame_shift_del	c.854	p.E285fs	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	21	0	0	28	21	42.86	-	-	-	-	2369601	T	-	2369601	7	5	161	1	0	1	0	1	0	0	0	0	33	1551	54	0	4364	0	ABCA3	16	2369601	Frame_Shift_Del	DEL	T	TCGA-A8-A06X-01A-21W-A019-09		2369601	87985152	144	9713	78	2								
ABCA3	0	genome.wustl.edu	37	chr16	2369604	2369607	+	Frame_Shift_Del	DEL	TGCA	TGCA	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tcagcctcctttccttctccTgcacgacagcacgggcaatg							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	TGCA	TGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	2369604	2369607	TGCA	-	DEL	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	frame_shift_del	c.851_848	p.V283fs	1.000:1.000:1.000:1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	21	0	0	27	21	43.75	-	-	-	-	2369607	TGCA	-	2369604	7	5	161	1	0	1	0	1	0	0	0	0	33	1580	55	0	4367	0	ABCA3	16	2369604	Frame_Shift_Del	DEL	TGCA	TCGA-A8-A06X-01A-21W-A019-09	3	2369604	87985149	145	9714	78	2								
CLDN6	0	genome.wustl.edu	37	chr16	3065794	3065794	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gagggcacgtgcagcctgcaGgtcctgtggcagcgccagca							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	3065794	3065794	G	-	DEL	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	frame_shift_del	c.229	p.L77fs	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	15	0	0	11	8	42.11	-	-	-	-	3065794	G	-	3065794	7	5	161	1	0	1	0	1	0	0	0	0	3519	991	35	0	437	0	CLDN6	16	3065794	Frame_Shift_Del	DEL	G	TCGA-A8-A06X-01A-21W-A019-09	696190	3065794	87288959	146	9715	79	2								
CLDN6	0	genome.wustl.edu	37	chr16	3065804	3065805	+	In_Frame_Ins	INS	-	-	GGG													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cagcctgcaggtcctgtggcINSagcgccagcagtgagtcgta							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	3065804	3065805	-	GGG	INS	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	in_frame_ins	c.219_218	p.75in_frame_insP	1.000:1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	16	0	0	13	8	38.1	-	-	-	GGG	3065805	-	GGG	3065804	7	5	161	1	0	1	1	0	0	0	0	0	3519	697	25	0	447	0	CLDN6	16	3065804	In_Frame_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09	10	3065804	87288949	147	9716	79	2								
ZNF174	0	genome.wustl.edu	37	chr16	3452203	3452203	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cccaagaggctctctcccagCtccgacagctctgccgtcag	9	18	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	3452203	3452203	C	G	SNP	ZNF174	ENST00000268655	human	ensembl	69_37n	1	known	missense	c.199	p.L67V	0.107	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	145	0	0	120	108	47.37	-	-	-	G	3452203	C	G	3452203	3	3	161	1	0	0	0	0	1	0	0	0	17840	797	28	4	201	4	ZNF174	16	3452203	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	386399	3452203	86902550	148	9717										
ACSM5	0	genome.wustl.edu	37	chr16	20439155	20439155	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccctctgctgtgtcccaaccAtctttcggctgcttgtgcag	9	15	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	20439155	20439155	A	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	missense	c.967	p.I323F	0.885	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	273	0	0	596	198	24.91	-	-	-	T	20439155	A	T	20439155	3	4	161	1	0	0	0	0	1	0	0	0	187	217	8	5	989	5	ACSM5	16	20439155	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	16986952	20439155	69915598	149	9718										
DNAH3	0	genome.wustl.edu	37	chr16	21117908	21117908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gtgacagcactggatttcttTaggaattcaatgagggatac	11	6	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	21117908	21117908	T	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.2187	p.L729	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	85	0	0	271	34	11.15	-	-	-	C	21117908	T	C	21117908	2	2	161	1	0	0	0	0	0	0	0	1	4639	1741	61	5		5	DNAH3	16	21117908	Silent	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	678753	21117908	69236845	150	9719										
SRCAP	0	genome.wustl.edu	37	chr16	30724858	30724858	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agccagagacgcctgctcctGacaggaactcccttgcagaa	10	14	0	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	30724858	30724858	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.2319	p.L773	0.948	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	212	0	0	425	88	17.15	-	-	-	A	30724858	G	A	30724858	2	1	161	1	0	0	0	0	0	0	0	1	15226	1277	45	2		2	SRCAP	16	30724858	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	9606950	30724858	59629895	151	9720										
PKD1L2	0	genome.wustl.edu	37	chr16	81232281	81232281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atgtaccttcaaccggaacaGccaggcggcaaatcccaaat	8	13	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	16	81232281	81232281	G	A	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.1529	p.A510V	0.197	pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	30	0	0	31	16	34.04	-	-	-	A	81232281	G	A	81232281	3	1	161	1	0	0	0	0	1	0	0	0	12039	971	34	4	6067	4	PKD1L2	16	81232281	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	50507423	81232281	9122472	152	9721										
ABR	0	genome.wustl.edu	37	chr17	960314	960314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cctgtgagcacctggagctcCactgagctcaggacaaaggc	12	13	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	960314	960314	C	T	SNP	ABR	ENST00000574544	human	ensembl	69_37n	-1	putative	missense	c.409	p.G137R	1.000	NULL	pfam_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABR	HGNC	ENSG00000159842	54	0	0	59	78	56.93	-	-	-	T	960314	C	T	960314	3	4	161	1	0	0	0	0	1	0	0	0	99	581	21	4	1213	4	ABR	17	960314	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09		960314	80234896	153	9722										
CD68	0	genome.wustl.edu	37	chr17	7483164	7483166	+	Splice_Site	DEL	CAG	CAG	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgactgtcctcacaaaaaatCagctactttgctgccatcct							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	7483164	7483166	CAG	-	DEL	CD68	ENST00000584502	human	ensembl	69_37n	1	putative	splice_site_del	c.50-3_50-1	e2-1	0.446:0.000:0.337	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	CD68	HGNC	ENSG00000129226	80	0	0	40	12	23.08	-	-	-	-	7483166	CAG	-	7483164	8	5	161	1	0	1	0	1	0	0	1	0	3059	838	29	0	92	0	CD68	17	7483164	Splice_Site	DEL	CAG	TCGA-A8-A06X-01A-21W-A019-09	6522850	7483164	73712046	154	9723										
CDRT1	0	genome.wustl.edu	37	chr17	15508674	15508674	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atgtccagaagatggatcttTcgattagatgacacagctat	9	7	1	4			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	15508674	15508674	T	A	SNP	CDRT1	ENST00000261644	human	ensembl	69_37n	-1	putative	nonsense	c.766	p.K256*	0.998	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDRT1	HGNC	ENSG00000241322	156	1	0.64	142	53	27.04	-	-	-	A	15508674	T	A	15508674	4	1	161	1	0	0	0	0	0	1	0	0	3203	1770	62	5	986	5	CDRT1	17	15508674	Nonsense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	8025510	15508674	65686536	155	9724										
COPS3	0	genome.wustl.edu	37	chr17	17168210	17168210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ataaaaagtgttttgcatcaTaggctccattctctttacag	6	8	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	17168210	17168210	T	C	SNP	COPS3	ENST00000268717	human	ensembl	69_37n	-1	known	missense	c.527	p.Y176C	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS3	HGNC	ENSG00000141030	82	0	0	37	39	51.32	-	-	-	C	17168210	T	C	17168210	3	2	161	1	0	0	0	0	1	0	0	0	3764	1406	49	5	772	5	COPS3	17	17168210	Missense_Mutation	SNP	T	TCGA-A8-A06X-01A-21W-A019-09	1659536	17168210	64027000	156	9725										
NF1	0	genome.wustl.edu	37	chr17	29576081	29576081	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agttcttccatgccatcatcAgttcctcctcagaattcccc	4	16	4	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	29576081	29576081	A	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.4054	p.S1352G	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	184	0	0	215	73	25.26	-	-	-	G	29576081	A	G	29576081	3	3	161	1	0	0	0	0	1	0	0	0	10428	188	7	5	4233	5	NF1	17	29576081	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	12407871	29576081	51619129	157	9726										
CCT6B	0	genome.wustl.edu	37	chr17	33266673	33266673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	caagaccagcatgtcccaagCaatctacagtgagatcttca	7	12	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	33266673	33266673	C	T	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.1028	p.C343Y	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	137	0	0	153	46	23.12	-	-	-	T	33266673	C	T	33266673	3	4	161	1	0	0	0	0	1	0	0	0	2987	710	25	4	588	4	CCT6B	17	33266673	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	3690592	33266673	47928537	158	9727										
ERBB2	0	genome.wustl.edu	37	chr17	37879581	37879581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tccgcccccagccctctgacGtccatcatctctgcggtggt	9	18	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	37879581	37879581	G	T	SNP	ERBB2	ENST00000580074	human	ensembl	69_37n	1	novel	missense	c.62	p.R21L	0.368	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERBB2	HGNC	ENSG00000141736	42	0	0	41	11	20.75	-	-	-	T	37879581	G	T	37879581	3	4	161	1	0	0	0	0	1	0	0	0	5243	1132	40	3	2022	3	ERBB2	17	37879581	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	4612908	37879581	43315629	159	9728										
NT5C3L	0	genome.wustl.edu	37	chr17	39988648	39988648	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	caccaccatcactcaccattCcaccatatgaggtagcttct	4	16	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	39988648	39988648	C	G	SNP	NT5C3L	ENST00000269534	human	ensembl	69_37n	-1	known	missense	c.286	p.E96Q	1.000	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3L	HGNC	ENSG00000141698	26	0	0	37	18	32.73	-	-	-	G	39988648	C	G	39988648	3	3	161	1	0	0	0	0	1	0	0	0	10762	864	30	2	612	2	NT5C3L	17	39988648	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	2109067	39988648	41206562	160	9729										
GGA3	0	genome.wustl.edu	37	chr17	73242652	73242652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cttgtgggccagcagtcggaCggcgatctgtggcctggggg	19	10	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	73242652	73242652	C	A	SNP	GGA3	ENST00000245541	human	ensembl	69_37n	-1	known	missense	c.139	p.V47F	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447	27	0	0	25	6	19.35	-	-	-	A	73242652	C	A	73242652	3	1	161	1	0	0	0	0	1	0	0	0	6406	536	19	3	2180	3	GGA3	17	73242652	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	33254004	73242652	7952558	161	9730										
EVPL	0	genome.wustl.edu	37	chr17	74003870	74003870	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gaagaaactggtgctctgggGggccggggaggcgagcgggg	23	7	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	17	74003870	74003870	G	C	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.5416	p.P1806A	0.002	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	84	0	0	121	26	17.57	-	-	-	C	74003870	G	C	74003870	3	2	161	1	0	0	0	0	1	0	0	0	5329	1232	43	4	689	4	EVPL	17	74003870	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	761218	74003870	7191340	162	9731										
CEP192	0	genome.wustl.edu	37	chr18	13117605	13117605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgaagtttttgagtcccagaGagccattctatgtcaaacat	8	8	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	18	13117605	13117605	G	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.7438	p.E2480K	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	110	0	0	295	50	14.49	-	-	-	A	13117605	G	A	13117605	3	1	161	1	0	0	0	0	1	0	0	0	3280	943	33	2	7608	2	CEP192	18	13117605	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		13117605	64959643	163	9732										
NETO1	0	genome.wustl.edu	37	chr18	70416292	70416292	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agttgtgttgtattcagattCatgtttgcttagagacccaa	9	6	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	18	70416292	70416292	C	T	SNP	NETO1	ENST00000327305	human	ensembl	69_37n	-1	known	missense	c.1573	p.E525K	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	230	0	0	240	70	22.58	-	-	-	T	70416292	C	T	70416292	3	4	161	1	0	0	0	0	1	0	0	0	10411	835	29	2	32	2	NETO1	18	70416292	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	57298687	70416292	7660956	164	9733										
EEF2	0	genome.wustl.edu	37	chr19	3982420	3982420	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	acggtaccgaggacaggatcGatctggaagtgtgagaaacg	15	7	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	3982420	3982420	G	C	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.615	p.I205M	0.064	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	13	0	0	13	5	26.32	-	-	-	C	3982420	G	C	3982420	3	2	161	1	0	0	0	0	1	0	0	0	4964	1048	37	3	2005	3	EEF2	19	3982420	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09		3982420	55146563	165	9734										
ACSBG2	0	genome.wustl.edu	37	chr19	6183250	6183250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgagagctcgggaccccacaCgatatccaaccagaataact	8	13	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	6183250	6183250	C	T	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1289	p.T430M	0.993	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	70	0	0	149	81	35.22	-	-	-	T	6183250	C	T	6183250	3	4	161	1	0	0	0	0	1	0	0	0	174	536	19	1	1323	1	ACSBG2	19	6183250	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	2200830	6183250	52945733	166	9735										
TYK2	0	genome.wustl.edu	37	chr19	10475418	10475418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	accagcgacacgaaggacagCgccgcagcccgggaaggcaa	14	14	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	10475418	10475418	C	T	SNP	TYK2	ENST00000525220	human	ensembl	69_37n	-1	novel	missense	c.377	p.R126H	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TYK2	HGNC	ENSG00000105397	15	0	0	29	11	27.5	-	-	-	T	10475418	C	T	10475418	3	4	161	1	0	0	0	0	1	0	0	0	16907	755	27	1	2392	1	TYK2	19	10475418	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	4292168	10475418	48653565	167	9736										
CPAMD8	0	genome.wustl.edu	37	chr19	17040007	17040007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	aggcgcagtggccgctgcacAtactggaactcatacttgtt	11	11	1	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	17040007	17040007	A	G	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.3062	p.M1021T	0.866	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	26	0	0	39	10	20.41	-	-	-	G	17040007	A	G	17040007	3	3	161	1	0	0	0	0	1	0	0	0	3825	224	8	5	2844	5	CPAMD8	19	17040007	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	6564589	17040007	42088976	168	9737										
FKBP8	0	genome.wustl.edu	37	chr19	18648426	18648426	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cctaccttgcccttgcggaaGagagccttgatgttgtctgg	12	11	1	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	18648426	18648426	G	A	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	0.942	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	10	0	0	24	7	22.58	-	-	-	A	18648426	G	A	18648426	2	1	161	1	0	0	0	0	0	0	0	1	5960	929	33	2		2	FKBP8	19	18648426	Silent	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	1608419	18648426	40480557	169	9738										
ZNF565	0	genome.wustl.edu	37	chr19	36674042	36674042	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tttacatacgtagggtttctCgcctgtgtgagttctttgat	10	7	2	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	36674042	36674042	C	T	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	missense	c.826	p.E276K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	106	0	0	245	84	25.45	-	-	-	T	36674042	C	T	36674042	3	4	161	1	0	0	0	0	1	0	0	0	18092	893	31	1	677	1	ZNF565	19	36674042	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	18025616	36674042	22454941	170	9739										
ERF	0	genome.wustl.edu	37	chr19	42752723	42752723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cctccccaggcccctccccaCgcaccttcttgtcctcaccc	4	25	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	42752723	42752723	C	T	SNP	ERF	ENST00000222329	human	ensembl	69_37n	-1	known	missense	c.1541	p.R514H	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERF	HGNC	ENSG00000105722	15	0	0	14	6	28.57	-	-	-	T	42752723	C	T	42752723	3	4	161	1	0	0	0	0	1	0	0	0	5258	536	19	1	109	1	ERF	19	42752723	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	6078681	42752723	16376260	171	9740										
CBLC	0	genome.wustl.edu	37	chr19	45284602	45284602	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tccatcttcgagttcgacgtCttcaccaggctctttcaggt							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	45284602	45284602	C	-	DEL	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	frame_shift_del	c.639	p.F214fs	1.000	pfam_Adaptor_Cbl_EF_hand-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	19	0	0	15	23	58.97	-	-	-	-	45284602	C	-	45284602	7	5	161	1	0	1	0	1	0	0	0	0	2727	900	32	0	649	0	CBLC	19	45284602	Frame_Shift_Del	DEL	C	TCGA-A8-A06X-01A-21W-A019-09	2531879	45284602	13844381	172	9741										
GYS1	0	genome.wustl.edu	37	chr19	49481193	49481193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	atccatacctgcgttgcaaaGatggctctcttcatcatagt	7	11	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	49481193	49481193	G	C	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.1296	p.I432M	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	68	0	0	94	11	10.48	-	-	-	C	49481193	G	C	49481193	3	2	161	1	0	0	0	0	1	0	0	0	6963	932	33	2	945	2	GYS1	19	49481193	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	4196591	49481193	9647790	173	9742										
KIR3DL2	0	genome.wustl.edu	37	chr19	55367355	55367355	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	actcaagtgacccactgcttGtttctgtcacaggtgaggaa	10	10	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	55367355	55367355	G	C	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.937	p.V313L	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	65	0	0	114	22	16.18	-	-	-	C	55367355	G	C	55367355	3	2	161	1	0	0	0	0	1	0	0	0	8374	1377	48	4	955	4	KIR3DL2	19	55367355	Missense_Mutation	SNP	G	TCGA-A8-A06X-01A-21W-A019-09	5886162	55367355	3761628	174	9743										
ZNF835	0	genome.wustl.edu	37	chr19	57176288	57176288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	cgctggcggctgtcaggatgCctctccttcgggctctcccc	12	17	3	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	19	57176288	57176288	C	A	SNP	ZNF835	ENST00000537055	human	ensembl	69_37n	-1	known	missense	c.279	p.R93S	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	26	0	0	36	9	19.57	-	-	-	A	57176288	C	A	57176288	3	1	161	1	0	0	0	0	1	0	0	0	18279	738	26	4	1336	4	ZNF835	19	57176288	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	1808933	57176288	1952695	175	9744										
ZBTB46	0	genome.wustl.edu	37	chr20	62421927	62421928	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tccgacgtcttctgcacctgINSgcagtagagcgtcttgaagt							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	20	62421927	62421928	-	T	INS	ZBTB46	ENST00000245663	human	ensembl	69_37n	-1	known	frame_shift_ins	c.184_183	p.Q61fs	1.000:1.000	pfam_BTB_POZ,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584	12	0	0	9	6	40	-	-	-	T	62421928	-	T	62421927	7	5	161	1	0	1	1	0	0	0	0	0	17643	1357	47	0	1601	0	ZBTB46	20	62421927	Frame_Shift_Ins	INS	-	TCGA-A8-A06X-01A-21W-A019-09		62421927	603593	176	9745										
TMPRSS15	0	genome.wustl.edu	37	chr21	19713777	19713777	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ccaaagttggttctggataaAgactcccattgcaaatccca	7	11	1	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	21	19713777	19713777	A	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.1517	p.L506H	0.001	NULL	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	141	0	0	60	127	67.55	-	-	-	T	19713777	A	T	19713777	3	4	161	1	0	0	0	0	1	0	0	0	16341	72	3	5	1594	5	TMPRSS15	21	19713777	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09		19713777	28416118	177	9746										
TMPRSS15	0	genome.wustl.edu	37	chr21	19770634	19770634	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ctctggcttcatgactctgtCcaagtgctgcacctagataa	8	12	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	21	19770634	19770634	C	G	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.158	p.G53A	0.011	smart_SEA,pfscan_SEA	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	140	0	0	67	112	62.57	-	-	-	G	19770634	C	G	19770634	3	3	161	1	0	0	0	0	1	0	0	0	16341	855	30	2	2997	2	TMPRSS15	21	19770634	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	56857	19770634	28359261	178	9747										
AGPAT3	0	genome.wustl.edu	37	chr21	45400871	45400871	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tctctgttgactcttctaggAcgcgctccaggagatatata	9	10	3	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	21	45400871	45400871	A	T	SNP	AGPAT3	ENST00000291572	human	ensembl	69_37n	1	known	missense	c.845	p.D282V	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT3	HGNC	ENSG00000160216	84	0	0	95	14	12.84	-	-	-	T	45400871	A	T	45400871	3	4	161	1	0	0	0	0	1	0	0	0	388	289	10	5	871	5	AGPAT3	21	45400871	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	25630237	45400871	2729024	179	9748										
C22orf23	0	genome.wustl.edu	37	chr22	38349110	38349110	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tggtcttggggcggcgccggAacccagttcctttggtcact	14	12	2	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	22	38349110	38349110	A	T	SNP	C22orf23	ENST00000249079	human	ensembl	69_37n	-1	known	missense	c.47	p.F16Y	0.091	pfam_UPF0193	pfam_UPF0193	-	no_errors	C22orf23	HGNC	ENSG00000128346	43	0	0	31	24	43.64	-	-	-	T	38349110	A	T	38349110	3	4	161	1	0	0	0	0	1	0	0	0	2157	246	9	5	630	5	C22orf23	22	38349110	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09		38349110	12955456	180	9749										
EGFL6	0	genome.wustl.edu	37	chrX	13624525	13624527	+	In_Frame_Del	DEL	TCA	TCA	-													0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tgaatgtgcctctggtaaagTcatctgtccctacaatcgaa							TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	13624525	13624527	TCA	-	DEL	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	in_frame_del	c.548_550	p.I184in_frame_del	0.781:0.025:0.014	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	141	0	0	163	57	25.79	-	-	-	-	13624527	TCA	-	13624525	7	5	161	1	0	1	0	1	0	0	0	0	4998	1667	58	0	570	0	EGFL6	23	13624525	In_Frame_Del	DEL	TCA	TCGA-A8-A06X-01A-21W-A019-09		13624525	141646035	181	9750										
BMX	0	genome.wustl.edu	37	chrX	15552435	15552435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttgattccattccaaagcttAttcattatcatcaacacaat	2	10	3	1			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	15552435	15552435	A	G	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.1120	p.I374V	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	231	0	0	258	131	33.68	-	-	-	G	15552435	A	G	15552435	3	3	161	1	0	0	0	0	1	0	0	0	1478	449	16	5	1162	5	BMX	23	15552435	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	1927910	15552435	139718125	182	9751										
HUWE1	0	genome.wustl.edu	37	chrX	53573667	53573667	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	agaagagcttggactcacctCtacagagagctgtagctggt	12	9	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	53573667	53573667	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.10756	p.E3586Q	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	90	0	0	102	18	15	-	-	-	G	53573667	C	G	53573667	3	3	161	1	0	0	0	0	1	0	0	0	7515	922	32	2	2432	2	HUWE1	23	53573667	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	38021232	53573667	101696893	183	9752										
ACRC	0	genome.wustl.edu	37	chrX	70828945	70828945	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	gagaatctacgacctgtttaAcagatccgtctgtgataaaa	8	8	2	3			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	70828945	70828945	A	T	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.1589	p.N530I	0.473	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	49	0	0	39	57	59.38	-	-	-	T	70828945	A	T	70828945	3	4	161	1	0	0	0	0	1	0	0	0	171	43	2	5	1623	5	ACRC	23	70828945	Missense_Mutation	SNP	A	TCGA-A8-A06X-01A-21W-A019-09	17255278	70828945	84441615	184	9753										
CYLC1	0	genome.wustl.edu	37	chrX	83129611	83129611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	ttggtgcaagatgcctcctcCacctccaaaaccaagatatg	7	13	0	2			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	83129611	83129611	C	G	SNP	CYLC1	ENST00000329312	human	ensembl	69_37n	1	known	missense	c.1895	p.P632R	0.573	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035	180	0	0	148	127	45.68	-	-	-	G	83129611	C	G	83129611	3	3	161	1	0	0	0	0	1	0	0	0	4172	594	21	4	1909	4	CYLC1	23	83129611	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	12300666	83129611	72140949	185	9754										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685742	125685742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	13	0.617646838591623	1.18550298907442	1.53203463203463	0.992985409652076	1	1	0	tttccacaggtggaagtagcCgtccaaggacaccgctccca	10	14	0	0			TCGA-A8-A06X-01A-21W-A019-09	TCGA-A8-A06X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc306402-3a55-4996-b786-f3f738f13dd3	09c30f57-516c-4a4f-bf63-943f09904d21	X	125685742	125685742	C	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	missense	c.850	p.G284S	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	26	0	0	13	5	27.78	-	-	-	T	125685742	C	T	125685742	3	4	161	1	0	0	0	0	1	0	0	0	4296	652	23	1	545	1	DCAF12L1	23	125685742	Missense_Mutation	SNP	C	TCGA-A8-A06X-01A-21W-A019-09	42556131	125685742	29584818	186	9755										
MTOR	0	genome.wustl.edu	37	chr1	11169377	11169377	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	atctcgaaccctgttaataaTctggatagctttcttattta	5	8	3	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	1	11169377	11169377	T	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.7498	p.I2500F	1.000	pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	101	0	0	17	57	77.03	-	-	-	A	11169377	T	A	11169377	3	1	162	1	0	0	0	0	1	0	0	0	10026	1435	50	5	163	5	MTOR	1	11169377	Missense_Mutation	SNP	T	TCGA-A8-A06Y-01A-21W-A019-09		11169377	238081244	1	9756										
NBPF14	0	genome.wustl.edu	37	chr1	148009371	148009371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gtcaacagccaagccaacacGctgttgctccaatatgtaaa	7	12	1	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	1	148009371	148009371	G	A	SNP	NBPF14	ENST00000369219	human	ensembl	69_37n	-1	known	missense	c.1936	p.R646C	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	401	3	0.74	49	9	15.52	-	-	-	A	148009371	G	A	148009371	3	1	162	1	0	0	0	0	1	0	0	0	10266	1087	38	1	857	1	NBPF14	1	148009371	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	136839994	148009371	101241250	2	9757										
RGPD2	0	genome.wustl.edu	37	chr2	88083849	88083849	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ccttctttggttgacttaaaTtctgtattagaagaaccctg	7	8	2	3			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	2	88083849	88083849	T	C	SNP	RGPD2	ENST00000398146	human	ensembl	69_37n	-1	known	silent	c.2694	p.E898	0.992	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304	12	0	0	8	6	40	-	-	-	C	88083849	T	C	88083849	2	2	162	1	0	0	0	0	0	0	0	1	13369	1490	52	5		5	RGPD2	2	88083849	Silent	SNP	T	TCGA-A8-A06Y-01A-21W-A019-09		88083849	155115524	3	9758										
GALNT13	0	genome.wustl.edu	37	chr2	155157929	155157929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttccttttcccagatttggcAatgtggaggctccttggaga	11	9	0	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	2	155157929	155157929	A	G	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	missense	c.983	p.Q328R	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	180	0	0	124	19	13.29	-	-	-	G	155157929	A	G	155157929	3	3	162	1	0	0	0	0	1	0	0	0	6261	130	5	5	1009	5	GALNT13	2	155157929	Missense_Mutation	SNP	A	TCGA-A8-A06Y-01A-21W-A019-09	67074080	155157929	88041444	4	9759										
WDR6	0	genome.wustl.edu	37	chr3	49051381	49051382	+	Frame_Shift_Ins	INS	-	-	G													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	actgcccatgtggtgtctgcINSgggggggcgggctgagatgc							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	3	49051381	49051382	-	G	INS	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	frame_shift_ins	c.2504_2505	p.R838fs	1.000:0.007	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	33	0	0	16	3	15.79	-	-	-	G	49051382	-	G	49051381	7	5	162	1	0	1	1	0	0	0	0	0	17407	768	27	0	2510	0	WDR6	3	49051381	Frame_Shift_Ins	INS	-	TCGA-A8-A06Y-01A-21W-A019-09		49051381	148971049	5	9760										
NEK11	0	genome.wustl.edu	37	chr3	131068491	131068491	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	cagaatgctagcgaagcagaGatccgcgagtgtttggaaaa	13	7	0	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	3	131068491	131068491	G	A	SNP	NEK11	ENST00000510688	human	ensembl	69_37n	1	novel	missense	c.1712	p.R571K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670	179	0	0	123	103	45.58	-	-	-	A	131068491	G	A	131068491	3	1	162	1	0	0	0	0	1	0	0	0	10395	942	33	2	1889	2	NEK11	3	131068491	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	82017110	131068491	66953939	6	9761										
GABRA1	0	genome.wustl.edu	37	chr5	161309644	161309644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttgtagcagaagatggatcaCgtctaaaccagtatgacctt	9	8	2	3			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	5	161309644	161309644	C	A	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	missense	c.640	p.R214S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	69	0	0	51	36	41.38	-	-	-	A	161309644	C	A	161309644	3	1	162	1	0	0	0	0	1	0	0	0	6209	536	19	3	662	3	GABRA1	5	161309644	Missense_Mutation	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		161309644	19605616	7	9762										
HIST1H4J	0	genome.wustl.edu	37	chr6	27792030	27792030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gcgccttgctcgccgcggcgGcgtgaagcgcatctccggcc	15	17	1	1			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	6	27792030	27792030	G	T	SNP	HIST1H4J	ENST00000355057	human	ensembl	69_37n	1	known	missense	c.128	p.G43V	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4J	HGNC	ENSG00000197238	29	0	0	3	9	75	-	-	-	T	27792030	G	T	27792030	3	4	162	1	0	0	0	0	1	0	0	0	7225	1203	42	4	130	4	HIST1H4J	6	27792030	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09		27792030	143323037	8	9763										
CYTH3	0	genome.wustl.edu	37	chr7	6210236	6210236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	aggtcgttcccgtcgtcctcCgggatcttaaatggctcgtt	11	12	1	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	7	6210236	6210236	C	T	SNP	CYTH3	ENST00000350796	human	ensembl	69_37n	-1	known	silent	c.753	p.P251	0.339	superfamily_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH3	HGNC	ENSG00000008256	15	0	0	4	6	60	-	-	-	T	6210236	C	T	6210236	2	4	162	1	0	0	0	0	0	0	0	1	4236	639	23	1		1	CYTH3	7	6210236	Silent	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		6210236	152928427	9	9764										
SAMD9	0	genome.wustl.edu	37	chr7	92733834	92733834	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	tgtcttcatgtgtaagaaatGaaatcagtttcctgacatca	7	7	4	3			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	7	92733834	92733834	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.1577	p.S526L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	244	0	0	214	151	41.26	-	-	-	A	92733834	G	A	92733834	3	1	162	1	0	0	0	0	1	0	0	0	13912	1294	45	2	3196	2	SAMD9	7	92733834	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	86523598	92733834	66404829	10	9765										
DKK4	0	genome.wustl.edu	37	chr8	42234500	42234500	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gctcctgatgttgttgaagtCcaggaccagagctcccaggg	13	11	0	3			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	8	42234500	42234500	C	A	SNP	DKK4	ENST00000220812	human	ensembl	69_37n	-1	known	missense	c.64	p.D22Y	1.000	NULL	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371	27	0	0	34	20	36.36	-	-	-	A	42234500	C	A	42234500	3	1	162	1	0	0	0	0	1	0	0	0	4583	855	30	2	626	2	DKK4	8	42234500	Missense_Mutation	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		42234500	104129522	11	9766										
GATA3	0	genome.wustl.edu	37	chr10	8115710	8115711	+	Frame_Shift_Ins	INS	-	-	C													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	tctttgtttagattaacagaINScccctgactatgaagaagga							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	10	8115710	8115711	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1059_1060	p.L354fs	1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	109	0	0	66	59	47.2	-	-	-	C	8115711	-	C	8115710	7	5	162	1	0	1	1	0	0	0	0	0	6305	272	10	0	1077	0	GATA3	10	8115710	Frame_Shift_Ins	INS	-	TCGA-A8-A06Y-01A-21W-A019-09		8115710	127419037	12	9767										
EXOC6	0	genome.wustl.edu	37	chr10	94653227	94653227	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttcatcatcagggttttgtaGatgctattacagaactcctt	7	8	3	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	10	94653227	94653227	G	C	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.271	p.D91H	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	361	0	0	333	219	39.6	-	-	-	C	94653227	G	C	94653227	3	2	162	1	0	0	0	0	1	0	0	0	5344	942	33	2	319	2	EXOC6	10	94653227	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	86537517	94653227	40881520	13	9768										
PPFIBP2	0	genome.wustl.edu	37	chr11	7672916	7672916	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ccacgcttcactggggacacCctggctatgcttctcaacat	8	15	2	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	11	7672916	7672916	C	G	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	silent	c.2277	p.T759	0.664	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	127	0	0	79	26	24.76	-	-	-	G	7672916	C	G	7672916	2	3	162	1	0	0	0	0	0	0	0	1	12387	610	22	4		4	PPFIBP2	11	7672916	Silent	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		7672916	127333600	14	9769										
PTHLH	0	genome.wustl.edu	37	chr12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gtgttcttctgttgttttccTttttttttttcaaaccccac							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	28	0	0	22	6	20	-	-	-	-	28114898	T	-	28114898	7	5	162	1	0	1	0	1	0	0	0	0	12842	1624	56	0		0	PTHLH	12	28114898	Frame_Shift_Del	DEL	T	TCGA-A8-A06Y-01A-21W-A019-09		28114898	105736997	15	9770										
SCYL2	0	genome.wustl.edu	37	chr12	100676854	100676854	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ctagagaatttgatgttggtCgacacattgccagtggtggc	13	7	0	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	12	100676854	100676854	C	T	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	nonsense	c.106	p.R36*	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	96	0	0	79	47	37.3	-	-	-	T	100676854	C	T	100676854	4	4	162	1	0	0	0	0	0	1	0	0	14036	876	31	1	108	1	SCYL2	12	100676854	Nonsense_Mutation	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09	72561956	100676854	33175041	16	9771										
OR11H6	0	genome.wustl.edu	37	chr14	20692496	20692496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttgcactggcctgcatctctGctccttccactgagcttatc	7	15	1	1			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	14	20692496	20692496	G	T	SNP	OR11H6	ENST00000315519	human	ensembl	69_37n	1	known	missense	c.628	p.A210S	0.201	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H6	HGNC	ENSG00000176219	103	0	0	56	55	49.11	-	-	-	T	20692496	G	T	20692496	3	4	162	1	0	0	0	0	1	0	0	0	11002	1319	46	4	630	4	OR11H6	14	20692496	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09		20692496	86657044	17	9772										
PRPF39	0	genome.wustl.edu	37	chr14	45579794	45579794	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	tatcttgaaaacatttgaagAatgtgttctaggattggcaa	9	4	2	3			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	14	45579794	45579794	A	C	SNP	PRPF39	ENST00000355765	human	ensembl	69_37n	1	known	missense	c.1346	p.E449A	0.999	NULL	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246	14	0	0	14	9	39.13	-	-	-	C	45579794	A	C	45579794	3	2	162	1	0	0	0	0	1	0	0	0	12650	246	9	5	1380	5	PRPF39	14	45579794	Missense_Mutation	SNP	A	TCGA-A8-A06Y-01A-21W-A019-09	24887298	45579794	61769746	18	9773										
TC2N	0	genome.wustl.edu	37	chr14	92265374	92265374	+	Missense_Mutation	SNP	G	G	C													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gagaatttttccttgaagaaGaactactgggtacactggac							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	14	92265374	92265374	G	C	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.596	p.S199C	0.983	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	128	0	0	97	76	43.93	-	-	-	C	92265374	G	C	92265374	3	2	162	1	0	0	0	0	1	0	0	0	15760	942	33	2	904	2	TC2N	14	92265374	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	46685580	92265374	15084166	19	9774	80	2								
TC2N	0	genome.wustl.edu	37	chr14	92265375	92265375	+	Missense_Mutation	SNP	A	A	T													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	agaatttttccttgaagaagAactactgggtacactggaca							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	14	92265375	92265375	A	T	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.595	p.S199T	0.952	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	124	0	0	96	75	43.86	-	-	-	T	92265375	A	T	92265375	3	4	162	1	0	0	0	0	1	0	0	0	15760	246	9	5	905	5	TC2N	14	92265375	Missense_Mutation	SNP	A	TCGA-A8-A06Y-01A-21W-A019-09	1	92265375	15084165	20	9775	80	2								
GOLGA5	0	genome.wustl.edu	37	chr14	93273140	93273140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	aggaatcttcaaaggaaaatGtgtcatcaaatgctgcctgc	9	8	4	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	14	93273140	93273140	G	T	SNP	GOLGA5	ENST00000163416	human	ensembl	69_37n	1	known	missense	c.604	p.V202L	0.000	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455	68	0	0	66	62	48.44	-	-	-	T	93273140	G	T	93273140	3	4	162	1	0	0	0	0	1	0	0	0	6608	1377	48	4	610	4	GOLGA5	14	93273140	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	1007765	93273140	14076400	21	9776										
CLPX	0	genome.wustl.edu	37	chr15	65450966	65450966	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttttttcaagttttatgtcaTcatgagaagaatccaatact	5	6	3	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	15	65450966	65450966	T	A	SNP	CLPX	ENST00000300107	human	ensembl	69_37n	-1	known	missense	c.839	p.D280V	1.000	tigrfam_Clp_protease_ATP-bd_su_ClpX	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	97	0	0	24	79	76.7	-	-	-	A	65450966	T	A	65450966	3	1	162	1	0	0	0	0	1	0	0	0	3586	1435	50	5	1094	5	CLPX	15	65450966	Missense_Mutation	SNP	T	TCGA-A8-A06Y-01A-21W-A019-09		65450966	37080426	22	9777										
TXNDC11	0	genome.wustl.edu	37	chr16	11792021	11792021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	tttcggccaggggattaaaaGgtatgaacagaaacagcgct	12	7	0	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	16	11792021	11792021	G	T	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.1148	p.P383H	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	78	0	0	83	48	36.64	-	-	-	T	11792021	G	T	11792021	3	4	162	1	0	0	0	0	1	0	0	0	16889	1000	35	4	1833	4	TXNDC11	16	11792021	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09		11792021	78562732	23	9778										
USP31	0	genome.wustl.edu	37	chr16	23085124	23085124	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	gtatgctgtctgcgtgcagaCctcatcttctgacagctgct	10	12	4	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	16	23085124	23085124	C	A	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.2254	p.V752F	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	37	0	0	46	9	16.36	-	-	-	A	23085124	C	A	23085124	3	1	162	1	0	0	0	0	1	0	0	0	17159	507	18	4	1816	4	USP31	16	23085124	Missense_Mutation	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09	11293103	23085124	67269629	24	9779										
CCT6B	0	genome.wustl.edu	37	chr17	33269814	33269814	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	taaagagaaagtaacacgcaCgttttttcatattccagtga	7	7	1	2			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	17	33269814	33269814	C	T	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	splice_site	c.725+1	e6+1	1.000	-	-	-	no_errors	CCT6B	HGNC	ENSG00000132141	78	0	0	58	57	49.57	-	-	-	T	33269814	C	T	33269814	5	4	162	1	0	0	0	0	0	0	1	0	2987	550	19	1	902	1	CCT6B	17	33269814	Splice_Site	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		33269814	47925396	25	9780										
KIF3B	0	genome.wustl.edu	37	chr20	30898744	30898744	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	aagcggagggaaggtggtggCagtggtgggggtggggaaga	25	2	0	1			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	20	30898744	30898744	C	T	SNP	KIF3B	ENST00000375712	human	ensembl	69_37n	1	known	silent	c.1164	p.G388	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	115	0	0	126	77	37.75	-	-	-	T	30898744	C	T	30898744	2	4	162	1	0	0	0	0	0	0	0	1	8353	697	25	4		4	KIF3B	20	30898744	Silent	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09		30898744	32126776	26	9781										
CBLN4	0	genome.wustl.edu	37	chr20	54579007	54579007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ggttggtgctccgcaccgccGagaaggcgaccttggagttg	16	11	0	1			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	20	54579007	54579007	G	A	SNP	CBLN4	ENST00000064571	human	ensembl	69_37n	-1	known	missense	c.221	p.S74L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN4	HGNC	ENSG00000054803	51	0	0	21	17	43.59	-	-	-	A	54579007	G	A	54579007	3	1	162	1	0	0	0	0	1	0	0	0	2732	1059	37	1	396	1	CBLN4	20	54579007	Missense_Mutation	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09	23680263	54579007	8446513	27	9782										
DMD	0	genome.wustl.edu	37	chrX	32867884	32867884	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ccttcgaggaggtctaggagGcgcctcccatcctgtaggtc	13	13	1	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	X	32867884	32867884	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.147	p.R49	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	164	0	0	199	118	37.22	-	-	-	T	32867884	G	T	32867884	2	4	162	1	0	0	0	0	0	0	0	1	4616	1190	42	4		4	DMD	23	32867884	Silent	SNP	G	TCGA-A8-A06Y-01A-21W-A019-09		32867884	122402676	28	9783										
KDM6A	0	genome.wustl.edu	37	chrX	44911035	44911035	+	Frame_Shift_Del	DEL	T	T	-													0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	cacaagtaaaagcaactgtcTtacaacagttaggtatgtaa							TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	X	44911035	44911035	T	-	DEL	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_del	c.736	p.L246fs	1.000	pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	32	0	0	31	14	30.43	-	-	-	-	44911035	T	-	44911035	7	5	162	1	0	1	0	1	0	0	0	0	8190	1606	56	0	770	0	KDM6A	23	44911035	Frame_Shift_Del	DEL	T	TCGA-A8-A06Y-01A-21W-A019-09	12043151	44911035	110359525	29	9784										
GAB3	0	genome.wustl.edu	37	chrX	153928295	153928295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.553235724720845	1.75591531755915	3.21917808219178	1.43074581430746	1	1	0	ttaccaaattcaaactaagcCgcttgtctcggtgtcttaag	7	10	3	0			TCGA-A8-A06Y-01A-21W-A019-09	TCGA-A8-A06Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bede568-d8b6-44c0-99e0-a9b6c7d4ce80	268a4247-2839-412a-a531-475663b3a6ac	X	153928295	153928295	C	T	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.1109	p.R370Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	176	0	0	149	116	43.77	-	-	-	T	153928295	C	T	153928295	3	4	162	1	0	0	0	0	1	0	0	0	6199	652	23	1	678	1	GAB3	23	153928295	Missense_Mutation	SNP	C	TCGA-A8-A06Y-01A-21W-A019-09	109017260	153928295	1342265	30	9785										
AJAP1	0	genome.wustl.edu	37	chr1	4771985	4771985	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tgtccatccgctggccgggcCgccccctcggaagccatgcc	12	19	0	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	1	4771985	4771985	C	G	SNP	AJAP1	ENST00000378190	human	ensembl	69_37n	1	known	missense	c.55	p.R19G	0.990	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	32	0	0	24	8	25	-	-	-	G	4771985	C	G	4771985	3	3	163	1	0	0	0	0	1	0	0	0	438	652	23	3	61	3	AJAP1	1	4771985	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09		4771985	244478636	1	9786										
BCAR3	0	genome.wustl.edu	37	chr1	94140474	94140474	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tctgggaaggcttgcaaattTtcctgcagccataattctca	8	10	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	1	94140474	94140474	T	G	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.13	p.K5Q	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	43	0	0	42	16	27.59	-	-	-	G	94140474	T	G	94140474	3	3	163	1	0	0	0	0	1	0	0	0	1353	1850	64	5	2508	5	BCAR3	1	94140474	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09	89368489	94140474	155110147	2	9787										
CHD1L	0	genome.wustl.edu	37	chr1	146766140	146766140	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gccacgaaaggttttaactgGtatggtactgagcgacttat	11	7	0	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	1	146766140	146766140	G	C	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.2556	p.W852C	1.000	pfscan_A1pp	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	432	1	0.23	543	134	19.79	-	-	-	C	146766140	G	C	146766140	3	2	163	1	0	0	0	0	1	0	0	0	3353	1270	44	4	2642	4	CHD1L	1	146766140	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	52625666	146766140	102484481	3	9788										
PLXNA2	0	genome.wustl.edu	37	chr1	208257849	208257849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	actgcggctggggcagatttCgcgccttaagggtgattggc	16	9	0	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	1	208257849	208257849	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.2174	p.R725Q	0.789	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	77	0	0	62	11	15.07	-	-	-	T	208257849	C	T	208257849	3	4	163	1	0	0	0	0	1	0	0	0	12194	884	31	1	3602	1	PLXNA2	1	208257849	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	61491709	208257849	40992772	4	9789										
TTN	0	genome.wustl.edu	37	chr2	179604295	179604295	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gagacaacagctgaagcaacCcctttagtgacaggtgtggc	12	10	0	3			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	2	179604295	179604295	C	A	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	silent	c.13152	p.G4384	0.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	266	1	0.37	182	54	22.78	-	-	-	A	179604295	C	A	179604295	2	1	163	1	0	0	0	0	0	0	0	1	16832	610	22	4		4	TTN	2	179604295	Silent	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09		179604295	63595078	5	9790										
NRP2	0	genome.wustl.edu	37	chr2	206659554	206659554	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ccctcgaccgacaaagaaaaGagctggctgtacaccctgga	10	13	0	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	2	206659554	206659554	G	C	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.2568	p.K856N	1.000	pirsf_Neuropilin	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	110	0	0	48	37	43.53	-	-	-	C	206659554	G	C	206659554	3	2	163	1	0	0	0	0	1	0	0	0	10734	933	33	2	2946	2	NRP2	2	206659554	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	27055259	206659554	36539819	6	9791										
SETD2	0	genome.wustl.edu	37	chr3	47084164	47084164	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gaggggggcggcagatccaaGagattatttgtcacaaccat	13	8	1	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	3	47084164	47084164	G	A	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	silent	c.7125	p.L2375	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	168	0	0	35	109	75.69	-	-	-	A	47084164	G	A	47084164	2	1	163	1	0	0	0	0	0	0	0	1	14219	929	33	2		2	SETD2	3	47084164	Silent	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		47084164	150938266	7	9792										
GLT8D1	0	genome.wustl.edu	37	chr3	52729266	52729266	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctgttgataaaatacgataaGcagaggaggtgttgtgatgc	13	4	0	3			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	3	52729266	52729266	G	C	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.865	p.L289V	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	173	0	0	24	100	80.65	-	-	-	C	52729266	G	C	52729266	3	2	163	1	0	0	0	0	1	0	0	0	6521	971	34	4	258	4	GLT8D1	3	52729266	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	5645102	52729266	145293164	8	9793										
OR5H1	0	genome.wustl.edu	37	chr3	97851850	97851850	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tgcaagatacagtttttttcGtttgcaatcagtgtaaccac	7	8	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	3	97851850	97851850	G	A	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	silent	c.309	p.S103	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	675	0	0	500	398	44.22	-	-	-	A	97851850	G	A	97851850	2	1	163	1	0	0	0	0	0	0	0	1	11232	1132	40	1		1	OR5H1	3	97851850	Silent	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	45122584	97851850	100170580	9	9794										
TMEM14E	0	genome.wustl.edu	37	chr3	152058621	152058621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tgcataaccactgatcccacCtaaagcagccagtgctgcat	7	14	0	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	3	152058621	152058621	C	T	SNP	TMEM14E	ENST00000408960	human	ensembl	69_37n	-1	known	missense	c.73	p.G25S	0.003	pfam_UPF0136_TM	pfam_UPF0136_TM	-	no_errors	TMEM14E	HGNC	ENSG00000221962	82	0	0	152	47	23.62	-	-	-	T	152058621	C	T	152058621	3	4	163	1	0	0	0	0	1	0	0	0	16161	681	24	4	308	4	TMEM14E	3	152058621	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	54206771	152058621	45963809	10	9795										
MUC20	0	genome.wustl.edu	37	chr3	195345582	195345582	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctctagcaccgggccacgccGctctggaaactcaaacgctg	10	16	3	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	3	195345582	195345582	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	missense	c.55	p.A19T	0.003	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	25	0	0	48	8	14.29	-	-	-	A	195345582	G	A	195345582	3	1	163	1	0	0	0	0	1	0	0	0	10048	1102	38	1		1	MUC20	3	195345582	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	43286961	195345582	2676848	11	9796										
ATP10D	0	genome.wustl.edu	37	chr4	47574191	47574191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gtgatggtgccaatgatgttAgcatgatacaagtggcagac	13	6	0	4			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	4	47574191	47574191	A	G	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.3184	p.S1062G	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	177	0	0	186	30	13.82	-	-	-	G	47574191	A	G	47574191	3	3	163	1	0	0	0	0	1	0	0	0	1122	420	15	5	3246	5	ATP10D	4	47574191	Missense_Mutation	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09		47574191	143580085	12	9797										
SLC30A5	0	genome.wustl.edu	37	chr5	68413160	68413160	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gctttttgactgctctgcttTagtcatgggactttttgctg	10	8	2	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	5	68413160	68413160	T	C	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.1376	p.L459S	0.998	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	219	0	0	372	80	17.66	-	-	-	C	68413160	T	C	68413160	3	2	163	1	0	0	0	0	1	0	0	0	14647	1764	61	5	1506	5	SLC30A5	5	68413160	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09		68413160	112502100	13	9798										
FAM169A	0	genome.wustl.edu	37	chr5	74096704	74096704	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gtaaaatcaacaattatttaCttgtttattgaagctgtaag	6	4	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	5	74096704	74096704	C	G	SNP	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	splice_site	c.1103+1	e9+1	1.000	-	-	-	no_errors	FAM169A	HGNC	ENSG00000198780	268	1	0.37	214	74	25.69	-	-	-	G	74096704	C	G	74096704	5	3	163	1	0	0	0	0	0	0	1	0	5527	579	20	4	924	4	FAM169A	5	74096704	Splice_Site	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	5683544	74096704	106818556	14	9799										
POU4F3	0	genome.wustl.edu	37	chr5	145719165	145719165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gcctgctggcacgcgccgaaGctctggcggcggtggatatc	16	13	1	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	5	145719165	145719165	G	A	SNP	POU4F3	ENST00000230732	human	ensembl	69_37n	1	known	missense	c.175	p.A59T	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU4F3	HGNC	ENSG00000091010	130	0	0	111	18	13.85	-	-	-	A	145719165	G	A	145719165	3	1	163	1	0	0	0	0	1	0	0	0	12353	971	34	4	181	4	POU4F3	5	145719165	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	71622461	145719165	35196095	15	9800										
TNS3	0	genome.wustl.edu	37	chr7	47333397	47333397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ggtacactcgatcaaaaagtGccggacgagttcattggcca	11	10	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	7	47333397	47333397	G	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.3706	p.H1236Y	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	172	0	0	131	42	24.28	-	-	-	A	47333397	G	A	47333397	3	1	163	1	0	0	0	0	1	0	0	0	16439	1319	46	4	659	4	TNS3	7	47333397	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		47333397	111805266	16	9801										
RPL7	0	genome.wustl.edu	37	chr8	74204933	74204933	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	agtttacttaccatcttttgGgcaaacttctttctcaggcg	7	10	3	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	8	74204933	74204933	G	T	SNP	RPL7	ENST00000352983	human	ensembl	69_37n	-1	known	silent	c.114	p.A38	1.000	pfam_Ribosomal_L30_N,tigrfam_Ribosomal_L7_euk	pfam_Ribosomal_L30_N,pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	-	no_errors	RPL7	HGNC	ENSG00000147604	83	0	0	72	14	16.28	-	-	-	T	74204933	G	T	74204933	2	4	163	1	0	0	0	0	0	0	0	1	13685	1219	43	4		4	RPL7	8	74204933	Silent	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		74204933	72159089	17	9802										
GRHL2	0	genome.wustl.edu	37	chr8	102570972	102570972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tggccacccacagcgcctatCtcaaagacgaccagcgcagc	9	17	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	8	102570972	102570972	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	missense	c.610	p.L204F	0.998	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	76	0	0	88	158	63.71	-	-	-	T	102570972	C	T	102570972	3	4	163	1	0	0	0	0	1	0	0	0	6815	913	32	2	624	2	GRHL2	8	102570972	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	28366039	102570972	43793050	18	9803										
WDR5	0	genome.wustl.edu	37	chr9	137021657	137021657	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tctggctcagaggataacctTgtttacatctggaaccttca	8	10	4	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	9	137021657	137021657	T	A	SNP	WDR5	ENST00000358625	human	ensembl	69_37n	1	known	silent	c.846	p.L282	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR5	HGNC	ENSG00000196363	42	0	0	15	7	31.82	-	-	-	A	137021657	T	A	137021657	2	1	163	1	0	0	0	0	0	0	0	1	17400	1799	63	5		5	WDR5	9	137021657	Silent	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09		137021657	4191774	19	9804										
CDH23	0	genome.wustl.edu	37	chr10	73439160	73439160	+	Frame_Shift_Del	DEL	C	C	-													0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tcaggcaacagatgaagactCccctcccaacaaccagatca							TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	10	73439160	73439160	C	-	DEL	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	frame_shift_del	c.1778	p.P594fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	12	0	0	4	2	33.33	-	-	-	-	73439160	C	-	73439160	7	5	163	1	0	1	0	1	0	0	0	0	3137	855	30	0	2058	0	CDH23	10	73439160	Frame_Shift_Del	DEL	C	TCGA-A8-A06Z-01A-11W-A019-09		73439160	62095587	20	9805										
TM9SF3	0	genome.wustl.edu	37	chr10	98303943	98303943	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	aaggaatgccccaataaacaTctgctttatccatctccttc	4	13	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	10	98303943	98303943	T	A	SNP	TM9SF3	ENST00000371142	human	ensembl	69_37n	-1	known	missense	c.1075	p.M359L	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	174	0	0	143	30	17.34	-	-	-	A	98303943	T	A	98303943	3	1	163	1	0	0	0	0	1	0	0	0	16074	1435	50	5	722	5	TM9SF3	10	98303943	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09	24864783	98303943	37230804	21	9806										
SLC25A28	0	genome.wustl.edu	37	chr10	101370803	101370803	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tgtgatatgtcctgtaatgtGtgagttcaaagccaaggact	11	6	1	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	10	101370803	101370803	G	C	SNP	SLC25A28	ENST00000370495	human	ensembl	69_37n	-1	known	missense	c.898	p.H300D	0.994	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A28	HGNC	ENSG00000155287	117	1	0.85	39	60	60.61	-	-	-	C	101370803	G	C	101370803	3	2	163	1	0	0	0	0	1	0	0	0	14580	1377	48	4	200	4	SLC25A28	10	101370803	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	3066860	101370803	34163944	22	9807										
DMBT1	0	genome.wustl.edu	37	chr10	124402730	124402730	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	cttccacttcctgaaccgctTcccctccgtgtacctgcgtt	6	18	0	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	10	124402730	124402730	T	A	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.7445	p.F2482Y	0.051	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	89	0	0	81	15	15.62	-	-	-	A	124402730	T	A	124402730	3	1	163	1	0	0	0	0	1	0	0	0	4613	1783	62	5	7268	5	DMBT1	10	124402730	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09	23031927	124402730	11132017	23	9808										
NLRP10	0	genome.wustl.edu	37	chr11	7982171	7982171	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	acggtcagcttgcttctcatCcgtgaaataggagctgaagt	11	9	2	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	11	7982171	7982171	C	A	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	missense	c.988	p.D330Y	0.117	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	159	0	0	158	34	17.62	-	-	-	A	7982171	C	A	7982171	3	1	163	1	0	0	0	0	1	0	0	0	10544	855	30	2	983	2	NLRP10	11	7982171	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09		7982171	127024345	24	9809										
SPTY2D1	0	genome.wustl.edu	37	chr11	18636798	18636798	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ggatgggacagagattttttGgctttgtgctcaacagcaga	13	6	1	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	11	18636798	18636798	G	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	silent	c.1023	p.A341	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	179	0	0	112	45	28.66	-	-	-	A	18636798	G	A	18636798	2	1	163	1	0	0	0	0	0	0	0	1	15217	1335	47	4		4	SPTY2D1	11	18636798	Silent	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	10654627	18636798	116369718	25	9810										
CKAP5	0	genome.wustl.edu	37	chr11	46839992	46839992	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gaccactctgggctcttttcAtcctttattttctggaagat	7	10	4	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	11	46839992	46839992	A	G	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	silent	c.120	p.D40	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	242	0	0	162	89	35.18	-	-	-	G	46839992	A	G	46839992	2	3	163	1	0	0	0	0	0	0	0	1	3475	214	8	5		5	CKAP5	11	46839992	Silent	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09	28203194	46839992	88166524	26	9811										
PARP11	0	genome.wustl.edu	37	chr12	3939170	3939170	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ttagaaaataattcttctgcTttgtgaaacatctcctgaaa	5	7	3	3			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	3939170	3939170	T	C	SNP	PARP11	ENST00000228820	human	ensembl	69_37n	-1	known	silent	c.33	p.K11	0.995	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224	106	0	0	111	16	12.6	-	-	-	C	3939170	T	C	3939170	2	2	163	1	0	0	0	0	0	0	0	1	11529	1606	56	5		5	PARP11	12	3939170	Silent	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09		3939170	129912725	27	9812										
GRIN2B	0	genome.wustl.edu	37	chr12	13906251	13906251	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gccctctgttccacactcacCtatttagcatattggactgg	7	13	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	13906251	13906251	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1010	p.R337T	1.000	NULL	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	347	0	0	347	125	26.48	-	-	-	G	13906251	C	G	13906251	3	3	163	1	0	0	0	0	1	0	0	0	6831	695	24	4	3488	4	GRIN2B	12	13906251	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	9967081	13906251	119945644	28	9813										
PLCZ1	0	genome.wustl.edu	37	chr12	18854640	18854640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ccttaccacgcttatcagaaCcttttctttcatgggtttcc	5	13	3	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	18854640	18854640	C	G	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.935	p.G312A	0.055	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	145	0	0	112	18	13.74	-	-	-	G	18854640	C	G	18854640	3	3	163	1	0	0	0	0	1	0	0	0	12118	507	18	4	923	4	PLCZ1	12	18854640	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	4948389	18854640	114997255	29	9814										
KITLG	0	genome.wustl.edu	37	chr12	88939581	88939581	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	cacgattcctgcagatccctTcagttttgacgagaggatta	9	10	1	3			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	88939581	88939581	T	C	SNP	KITLG	ENST00000228280	human	ensembl	69_37n	-1	known	missense	c.77	p.E26G	0.937	pfam_SCF,pirsf_SCF	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130	86	0	0	115	22	16.06	-	-	-	C	88939581	T	C	88939581	3	2	163	1	0	0	0	0	1	0	0	0	8383	1783	62	5	776	5	KITLG	12	88939581	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09	70084941	88939581	44912314	30	9815										
CHST11	0	genome.wustl.edu	37	chr12	105151386	105151386	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctggaagaggattctaattaCgtcctgcagctggcaggagt	13	8	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	105151386	105151386	C	T	SNP	CHST11	ENST00000303694	human	ensembl	69_37n	1	known	silent	c.864	p.Y288	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	168	0	0	120	29	19.46	-	-	-	T	105151386	C	T	105151386	2	4	163	1	0	0	0	0	0	0	0	1	3428	547	19	1		1	CHST11	12	105151386	Silent	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	16211805	105151386	28700509	31	9816										
RNF10	0	genome.wustl.edu	37	chr12	121013640	121013640	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ccctgtggacagcgacggggAgagtgataattcagaccgtg	15	9	1	3			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	12	121013640	121013640	A	G	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.2261	p.E754G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	434	0	0	231	113	32.75	-	-	-	G	121013640	A	G	121013640	3	3	163	1	0	0	0	0	1	0	0	0	13508	304	11	5	2308	5	RNF10	12	121013640	Missense_Mutation	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09	15862254	121013640	12838255	32	9817										
GPHB5	0	genome.wustl.edu	37	chr14	63784514	63784514	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	cgaggacacagccatagccaGccagaaggaggagggccatg	15	11	0	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	14	63784514	63784514	G	C	SNP	GPHB5	ENST00000314140	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.909	-	-	-	no_errors	GPHB5	HGNC	ENSG00000179600	58	0	0	46	18	28.12	-	-	-	C	63784514	G	C	63784514	1	2	163	0	1	0	0	0	0	0	0	0	6659	971	34	4		4	GPHB5	14	63784514	RNA	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		63784514	43565026	33	9818										
PLEKHH1	0	genome.wustl.edu	37	chr14	68029176	68029176	+	Frame_Shift_Del	DEL	A	A	-													0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	atgaagcttcttaccttcagAtgtagttcagcttcctgggg							TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	14	68029176	68029176	A	-	DEL	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	frame_shift_del	c.828	p.R276fs	0.034	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	74	0	0	6	24	77.42	-	-	-	-	68029176	A	-	68029176	7	5	163	1	0	1	0	1	0	0	0	0	12150	330	12	0	850	0	PLEKHH1	14	68029176	Frame_Shift_Del	DEL	A	TCGA-A8-A06Z-01A-11W-A019-09	4244662	68029176	39320364	34	9819										
DICER1	0	genome.wustl.edu	37	chr14	95574771	95574771	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	aggtaaaggtgtagttaaaaCcattcctatcacatacaggt	8	7	1	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	14	95574771	95574771	C	A	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.2326	p.V776F	1.000	NULL	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	189	0	0	147	38	20.54	-	-	-	A	95574771	C	A	95574771	3	1	163	1	0	0	0	0	1	0	0	0	4557	507	18	4	3494	4	DICER1	14	95574771	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	27545595	95574771	11774769	35	9820										
PLCB2	0	genome.wustl.edu	37	chr15	40599840	40599841	+	Frame_Shift_Ins	INS	-	-	G													0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctcagataggccttcaccttINSggggggcagcaggacagggt							TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	15	40599840	40599841	-	G	INS	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	frame_shift_ins	c.34_33	p.K11fs	0.060:0.002	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	27	0	0	15	2	11.76	-	-	-	G	40599841	-	G	40599840	7	5	163	1	0	1	1	0	0	0	0	0	12102	1821	63	0	3651	0	PLCB2	15	40599840	Frame_Shift_Ins	INS	-	TCGA-A8-A06Z-01A-11W-A019-09		40599840	61931552	36	9821										
CHRNB4	0	genome.wustl.edu	37	chr15	78921528	78921528	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gaggggctggtggaggtggcGgtggcctcgggcttggtcac	22	8	1	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	15	78921528	78921528	G	A	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	silent	c.1119	p.T373	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	49	0	0	24	24	50	-	-	-	A	78921528	G	A	78921528	2	1	163	1	0	0	0	0	0	0	0	1	3422	1103	39	1		1	CHRNB4	15	78921528	Silent	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	38321688	78921528	23609864	37	9822										
GRIN2A	0	genome.wustl.edu	37	chr16	9858117	9858117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	cgacctcactacagtccttgGggtatttggaggccactgac	11	12	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	16	9858117	9858117	G	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.3284	p.P1095H	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	227	0	0	282	94	24.93	-	-	-	T	9858117	G	T	9858117	3	4	163	1	0	0	0	0	1	0	0	0	6830	1232	43	4	1114	4	GRIN2A	16	9858117	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		9858117	80496636	38	9823										
CLEC16A	0	genome.wustl.edu	37	chr16	11076751	11076751	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ccaggtcttcttaattatacAtcatgcaccgctggtgaact	7	11	3	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	16	11076751	11076751	A	T	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.974	p.H325L	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	45	0	0	28	23	45.1	-	-	-	T	11076751	A	T	11076751	3	4	163	1	0	0	0	0	1	0	0	0	3530	217	8	5	1008	5	CLEC16A	16	11076751	Missense_Mutation	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09	1218634	11076751	79278002	39	9824										
SLC7A6OS	0	genome.wustl.edu	37	chr16	68337945	68337945	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ttaccagctcccattcttggCtgtagggctgcacggagagg	13	11	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	16	68337945	68337945	C	A	SNP	SLC7A6OS	ENST00000263997	human	ensembl	69_37n	-1	known	missense	c.662	p.S221I	0.980	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061	102	0	0	69	26	27.37	-	-	-	A	68337945	C	A	68337945	3	1	163	1	0	0	0	0	1	0	0	0	14791	797	28	4	279	4	SLC7A6OS	16	68337945	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	57261194	68337945	22016808	40	9825										
TP53	0	genome.wustl.edu	37	chr17	7578547	7578547	+	Frame_Shift_Del	DEL	G	G	-													0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	aaaacatcttgttgagggcaGgggagtactgtaggaagagg							TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	17	7578547	7578547	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.383	p.P128fs	0.106	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0	7	44	80	-	-	-	-	7578547	G	-	7578547	7	5	163	1	0	1	0	1	0	0	0	0	16477	1000	35	0	915	0	TP53	17	7578547	Frame_Shift_Del	DEL	G	TCGA-A8-A06Z-01A-11W-A019-09		7578547	73616663	41	9826										
MYH2	0	genome.wustl.edu	37	chr17	10436645	10436645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctccactcttgccaagaaccCtctgcacctggcctgggttc	8	17	2	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	17	10436645	10436645	C	A	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.2398	p.G800W	1.000	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	271	1	0.37	332	80	19.42	-	-	-	A	10436645	C	A	10436645	3	1	163	1	0	0	0	0	1	0	0	0	10107	681	24	4	3507	4	MYH2	17	10436645	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	2858098	10436645	70758565	42	9827										
ERBB2	0	genome.wustl.edu	37	chr17	37868205	37868205	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctacctttctacggacgtggGatcctgcaccctcgtctgcc	9	16	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	17	37868205	37868205	G	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.926	p.G309A	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	136	0	0	79	12	13.19	-	-	-	C	37868205	G	C	37868205	3	2	163	1	0	0	0	0	1	0	0	0	5243	1174	41	2	956	2	ERBB2	17	37868205	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	27431560	37868205	43327005	43	9828										
SDK2	0	genome.wustl.edu	37	chr17	71427674	71427674	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gtctgctgaggcctcatcgaCcccccgagagttggtggcca	13	14	2	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	17	71427674	71427674	C	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1447	p.V483F	0.944	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	70	0	0	59	10	14.49	-	-	-	A	71427674	C	A	71427674	3	1	163	1	0	0	0	0	1	0	0	0	14057	507	18	4	5211	4	SDK2	17	71427674	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	33559469	71427674	9767536	44	9829										
DNAH17	0	genome.wustl.edu	37	chr17	76459120	76459120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ctcgttgacggtggtgtgcaCgtaggacatgaagaagctga	15	7	0	4			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	17	76459120	76459120	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.8938	p.V2980M	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	50	0	0	27	6	18.18	-	-	-	T	76459120	C	T	76459120	3	4	163	1	0	0	0	0	1	0	0	0	4637	536	19	1	4508	1	DNAH17	17	76459120	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	5031446	76459120	4736090	45	9830										
KIRREL2	0	genome.wustl.edu	37	chr19	36357208	36357208	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gacttcaacccacacctgggCatggtccccccctgcagact	8	18	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	19	36357208	36357208	C	T	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	silent	c.1941	p.G647	0.121	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	81	0	0	31	8	20.51	-	-	-	T	36357208	C	T	36357208	2	4	163	1	0	0	0	0	0	0	0	1	8378	697	25	4		4	KIRREL2	19	36357208	Silent	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09		36357208	22771775	46	9831										
YIF1B	0	genome.wustl.edu	37	chr19	38799894	38799894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	taggggaagaacagcaggccCagctttctgcccacatacat	10	12	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	19	38799894	38799894	C	A	SNP	YIF1B	ENST00000588002	human	ensembl	69_37n	-1	known	missense	c.314	p.W105L	0.999	pfam_Hrf1	pfam_Hrf1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	YIF1B	HGNC	ENSG00000167645	56	0	0	33	12	26.67	-	-	-	A	38799894	C	A	38799894	3	1	163	1	0	0	0	0	1	0	0	0	17573	581	21	4	677	4	YIF1B	19	38799894	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	2442686	38799894	20329089	47	9832										
ZNF616	0	genome.wustl.edu	37	chr19	52618711	52618711	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gtttctctccactatgaattCtccgatgcactgtaagacgt	7	11	2	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	19	52618711	52618711	C	A	SNP	ZNF616	ENST00000330123	human	ensembl	69_37n	-1	known	missense	c.1706	p.R569I	0.204	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	189	0	0	275	106	27.82	-	-	-	A	52618711	C	A	52618711	3	1	163	1	0	0	0	0	1	0	0	0	18137	913	32	2	643	2	ZNF616	19	52618711	Missense_Mutation	SNP	C	TCGA-A8-A06Z-01A-11W-A019-09	13818817	52618711	6510272	48	9833										
ZFP28	0	genome.wustl.edu	37	chr19	57066546	57066546	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	ggaaaaccttcatccaaattGgacaccttaatcaacataag	5	10	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	19	57066546	57066546	G	T	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	nonsense	c.2392	p.G798*	0.101	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	332	0	0	385	78	16.85	-	-	-	T	57066546	G	T	57066546	4	4	163	1	0	0	0	0	0	1	0	0	17738	1349	47	4	2422	4	ZFP28	19	57066546	Nonsense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	4447835	57066546	2062437	49	9834										
RAE1	0	genome.wustl.edu	37	chr20	55949808	55949808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	catctcagcttgctgtttcaAtcacaatggaaacatatttg	6	9	3	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	20	55949808	55949808	A	G	SNP	RAE1	ENST00000371242	human	ensembl	69_37n	1	known	missense	c.971	p.N324S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	222	0	0	229	34	12.93	-	-	-	G	55949808	A	G	55949808	3	3	163	1	0	0	0	0	1	0	0	0	13081	101	4	5	1009	5	RAE1	20	55949808	Missense_Mutation	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09		55949808	7075712	50	9835										
MEI1	0	genome.wustl.edu	37	chr22	42166957	42166957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gcatccccagcatcctgctcAtcttgctggtaggcaaccac	8	16	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	22	42166957	42166957	A	C	SNP	MEI1	ENST00000401548	human	ensembl	69_37n	1	known	missense	c.2536	p.I846L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	299	1	0.33	324	39	10.74	-	-	-	C	42166957	A	C	42166957	3	2	163	1	0	0	0	0	1	0	0	0	9536	217	8	5	2614	5	MEI1	22	42166957	Missense_Mutation	SNP	A	TCGA-A8-A06Z-01A-11W-A019-09		42166957	9137609	51	9836										
FRMPD4	0	genome.wustl.edu	37	chrX	12627986	12627986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tgaaaagccagtggtcgttcGctcagtaacaccaggtaagc	11	10	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	12627986	12627986	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.305	p.R102H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	99	0	0	123	74	37.56	-	-	-	A	12627986	G	A	12627986	3	1	163	1	0	0	0	0	1	0	0	0	6108	1087	38	1	315	1	FRMPD4	23	12627986	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09		12627986	142642574	52	9837										
ASB9	0	genome.wustl.edu	37	chrX	15272920	15272920	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gacctccaagacaggcttcaTggagtggggaaacatgatct	12	9	2	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	15272920	15272920	T	C	SNP	ASB9	ENST00000380488	human	ensembl	69_37n	-1	known	missense	c.221	p.H74R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB9	HGNC	ENSG00000102048	266	1	0.37	240	171	41.61	-	-	-	C	15272920	T	C	15272920	3	2	163	1	0	0	0	0	1	0	0	0	1034	1464	51	5	712	5	ASB9	23	15272920	Missense_Mutation	SNP	T	TCGA-A8-A06Z-01A-11W-A019-09	2644934	15272920	139997640	53	9838										
HUWE1	0	genome.wustl.edu	37	chrX	53573461	53573461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	agtagcagcttgagaacagtGtcccgggtcccagagtcccc	12	13	0	2			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	53573461	53573461	G	A	SNP	HUWE1	ENST00000427052	human	ensembl	69_37n	-1	known	missense	c.7951	p.H2651Y	1.000	NULL	pfam_HECT,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUWE1	HGNC	ENSG00000086758	90	0	0	88	63	41.72	-	-	-	A	53573461	G	A	53573461	3	1	163	1	0	0	0	0	1	0	0	0	7515	1368	48	4	2333	4	HUWE1	23	53573461	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	38300541	53573461	101697099	54	9839										
TSR2	0	genome.wustl.edu	37	chrX	54467178	54467179	+	Frame_Shift_Ins	INS	-	-	G													0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	caggagaaggccaagtggctINSggggggtgcagtggaggatt							TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	54467178	54467179	-	G	INS	TSR2	ENST00000375151	human	ensembl	69_37n	1	known	frame_shift_ins	c.137_138	p.A49fs	1.000:0.998	pfam_Pre-rRNA_process_TSR2	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526	10	0	0	15	2	11.76	-	-	-	G	54467179	-	G	54467178	7	5	163	1	0	1	1	0	0	0	0	0	16761	1580	55	0	143	0	TSR2	23	54467178	Frame_Shift_Ins	INS	-	TCGA-A8-A06Z-01A-11W-A019-09	893717	54467178	100803382	55	9840										
ZNF711	0	genome.wustl.edu	37	chrX	84525674	84525674	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	tagctgttataataggtcctGatggacagcccctcacagtg	10	10	1	1			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	84525674	84525674	G	T	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.1150	p.D384Y	1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	62	0	0	65	40	38.1	-	-	-	T	84525674	G	T	84525674	3	4	163	1	0	0	0	0	1	0	0	0	18212	1290	45	2	1152	2	ZNF711	23	84525674	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	30058496	84525674	70744886	56	9841										
ZMAT1	0	genome.wustl.edu	37	chrX	101152870	101152870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	gttgaaatcctgatggagatGcctgatcatgttcctccatt	9	9	1	4			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	101152870	101152870	G	T	SNP	ZMAT1	ENST00000372782	human	ensembl	69_37n	-1	known	missense	c.476	p.A159E	0.015	NULL	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	429	0	0	618	109	14.99	-	-	-	T	101152870	G	T	101152870	3	4	163	1	0	0	0	0	1	0	0	0	17787	1319	46	4	1452	4	ZMAT1	23	101152870	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	16627196	101152870	54117690	57	9842										
GPR50	0	genome.wustl.edu	37	chrX	150348636	150348636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0517241379310345	3	0.904872247913239	0.947142857142857	0.789285714285714	1.05238095238095	1	1	0	cttcactgttaccatcgtctGcatccacttcgtcctccctc	4	18	2	0			TCGA-A8-A06Z-01A-11W-A019-09	TCGA-A8-A06Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f540c4f8-75b3-47d7-a7cf-53cbf7a2c814	d8d09274-b620-4783-96d1-7b1ba32f89e6	X	150348636	150348636	G	T	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	1	known	missense	c.581	p.C194F	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	303	0	0	189	161	46	-	-	-	T	150348636	G	T	150348636	3	4	163	1	0	0	0	0	1	0	0	0	6747	1319	46	4	587	4	GPR50	23	150348636	Missense_Mutation	SNP	G	TCGA-A8-A06Z-01A-11W-A019-09	49195766	150348636	4921924	58	9843										
H6PD	0	genome.wustl.edu	37	chr1	9322166	9322166	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgtcattcgcgacgtcctccAgaaccatctgacggaggtcc	10	14	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	9322166	9322166	A	C	SNP	H6PD	ENST00000377403	human	ensembl	69_37n	1	known	missense	c.794	p.Q265P	1.000	pfam_G6P_DH_C,prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239	55	0	0	9	19	65.52	-	-	-	C	9322166	A	C	9322166	3	2	164	1	0	0	0	0	1	0	0	0	6987	188	7	5	804	5	H6PD	1	9322166	Missense_Mutation	SNP	A	TCGA-A8-A075-01A-11D-A099-09		9322166	239928455	1	9844										
PRAMEF2	0	genome.wustl.edu	37	chr1	12921147	12921147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agaagaggacttgaagtgtcTctcccagttcccaagcctcg	10	12	1	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	12921147	12921147	T	C	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.938	p.L313P	0.029	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	152	0	0	126	35	21.74	-	-	-	C	12921147	T	C	12921147	3	2	164	1	0	0	0	0	1	0	0	0	12513	1551	54	5	948	5	PRAMEF2	1	12921147	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09	3598981	12921147	236329474	2	9845										
ZNF642	0	genome.wustl.edu	37	chr1	40947462	40947462	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gtctcaggatgctgaggacgTaaagacccagagagaaagtt	13	7	1	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	40947462	40947462	T	A	SNP	ZNF642	ENST00000372705	human	ensembl	69_37n	1	known	missense	c.155	p.V52E	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF642	HGNC	ENSG00000187815	100	0	0	48	41	45.56	-	-	-	A	40947462	T	A	40947462	3	1	164	1	0	0	0	0	1	0	0	0	18154	1638	57	5	161	5	ZNF642	1	40947462	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09	28026315	40947462	208303159	3	9846										
NCSTN	0	genome.wustl.edu	37	chr1	160327968	160327968	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ctgacagtgggcttcggcatCctcatcttctccctcatcgt	8	15	4	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	160327968	160327968	C	T	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	silent	c.2037	p.I679	1.000	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	155	0	0	106	21	16.54	-	-	-	T	160327968	C	T	160327968	2	4	164	1	0	0	0	0	0	0	0	1	10313	845	30	2		2	NCSTN	1	160327968	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	119380506	160327968	88922653	4	9847										
RGS4	0	genome.wustl.edu	37	chr1	163043400	163043400	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aatgaattcatctcagtccaGgcaaccaaagaggtaggttt	9	8	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	163043400	163043400	G	C	SNP	RGS4	ENST00000421743	human	ensembl	69_37n	1	known	missense	c.657	p.Q219H	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS4	HGNC	ENSG00000117152	145	0	0	126	34	20.99	-	-	-	C	163043400	G	C	163043400	3	2	164	1	0	0	0	0	1	0	0	0	13391	991	35	4	675	4	RGS4	1	163043400	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	2715432	163043400	86207221	5	9848										
FAM5C	0	genome.wustl.edu	37	chr1	190068153	190068153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aggaacgcggtgcagaccacCtggtcattcggacacgtgca	13	12	1	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	190068153	190068153	C	T	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	silent	c.1296	p.Q432	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	31	0	0	40	5	11.11	-	-	-	T	190068153	C	T	190068153	2	4	164	1	0	0	0	0	0	0	0	1	5639	680	24	4		4	FAM5C	1	190068153	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	27024753	190068153	59182468	6	9849										
ATP2B4	0	genome.wustl.edu	37	chr1	203702418	203702418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cctaaggcgacagaacatggGtcaacaccttgatgtaaaac	9	10	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	203702418	203702418	G	T	SNP	ATP2B4	ENST00000341360	human	ensembl	69_37n	1	known	missense	c.3377	p.G1126V	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_ATP_Ca_trans_C,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	215	0	0	289	41	12.42	-	-	-	T	203702418	G	T	203702418	3	4	164	1	0	0	0	0	1	0	0	0	1146	1261	44	4	3455	4	ATP2B4	1	203702418	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	13634265	203702418	45548203	7	9850										
NFU1	0	genome.wustl.edu	37	chr2	69642366	69642366	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	accaggggtaagccagatgcAaagaagtccatgattgttgc	12	8	0	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	69642366	69642366	A	G	SNP	NFU1	ENST00000410022	human	ensembl	69_37n	-1	known	silent	c.435	p.F145	1.000	pfam_NIF_FeS_clus_asmbl_NifU-like_N,superfamily_NIF_FeS_clus_asmbl_NifU-like_N,smart_NIF_FeS_clus_asmbl_NifU-like_N,pirsf_HIRA-interacting_protein_5	pfam_NIF_FeS_clus_asmbl_NifU-like_N,pfam_NIF_FeS_clus_asmbl_NifU_C,superfamily_NIF_FeS_clus_asmbl_NifU-like_N,smart_NIF_FeS_clus_asmbl_NifU-like_N,pirsf_HIRA-interacting_protein_5	-	no_errors	NFU1	HGNC	ENSG00000169599	170	0	0	205	37	15.29	-	-	-	G	69642366	A	G	69642366	2	3	164	1	0	0	0	0	0	0	0	1	10458	127	5	5		5	NFU1	2	69642366	Silent	SNP	A	TCGA-A8-A075-01A-11D-A099-09		69642366	173557007	8	9851										
MXD1	0	genome.wustl.edu	37	chr2	70165429	70165429	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gtctctaagagagtgggcacTgcggctgtctccttgaaggt	14	9	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	70165429	70165429	T	G	SNP	MXD1	ENST00000465446	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MXD1	HGNC	ENSG00000059728	60	0	0	57	12	17.39	-	-	-	G	70165429	T	G	70165429	1	3	164	0	1	0	0	0	0	0	0	0	10071	1595	55	5		5	MXD1	2	70165429	RNA	SNP	T	TCGA-A8-A075-01A-11D-A099-09	523063	70165429	173033944	9	9852										
SEMA4F	0	genome.wustl.edu	37	chr2	74902498	74902498	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gggaaagagtatgatgtgctCtacctggggacaggtatatt	14	5	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	74902498	74902498	C	G	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	silent	c.1359	p.L453	0.995	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	83	0	0	79	31	28.18	-	-	-	G	74902498	C	G	74902498	2	3	164	1	0	0	0	0	0	0	0	1	14123	900	32	2		2	SEMA4F	2	74902498	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	4737069	74902498	168296875	10	9853										
MYO7B	0	genome.wustl.edu	37	chr2	128386057	128386057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ggtggccctgttcctggaggGcctgaaggagaggtccattt	16	9	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	128386057	128386057	G	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.4493	p.G1498V	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	25	0	0	34	9	20.93	-	-	-	T	128386057	G	T	128386057	3	4	164	1	0	0	0	0	1	0	0	0	10155	1203	42	4	4619	4	MYO7B	2	128386057	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	53483559	128386057	114813316	11	9854										
COL5A2	0	genome.wustl.edu	37	chr2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cttgcccacatttccattccGcttctgaaattaaatgatgc	5	12	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	189898939	189898939	G	A	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.4357	p.R1453W	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	138	0	0	87	21	19.27	-	-	-	A	189898939	G	A	189898939	3	1	164	1	0	0	0	0	1	0	0	0	3727	1086	38	1	146	1	COL5A2	2	189898939	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	61512882	189898939	53300434	12	9855										
SF3B1	0	genome.wustl.edu	37	chr2	198274677	198274677	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgctccaggagtctcgcttcCctttgcacgacctggtgtct	10	14	2	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	198274677	198274677	C	A	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	nonsense	c.721	p.G241*	1.000	NULL	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	222	0	0	205	26	11.26	-	-	-	A	198274677	C	A	198274677	4	1	164	1	0	0	0	0	0	1	0	0	14237	632	22	4	3269	4	SF3B1	2	198274677	Nonsense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	8375738	198274677	44924696	13	9856										
FASTKD2	0	genome.wustl.edu	37	chr2	207656516	207656516	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgctgctgtaaatgtgcaaaGcacacaataaagtgaaaatc	8	7	0	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	207656516	207656516	G	C	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.2123	p.S708T	0.005	NULL	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	165	0	0	143	38	20.99	-	-	-	C	207656516	G	C	207656516	3	2	164	1	0	0	0	0	1	0	0	0	5732	971	34	4	2165	4	FASTKD2	2	207656516	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	9381839	207656516	35542857	14	9857										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	192	0	0	205	108	34.5	-	-	-	A	178928079	G	A	178928079	3	1	164	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		178928079	19094351	15	9858										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	139	0	0	135	72	34.78	-	-	-	A	178936091	G	A	178936091	3	1	164	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	8012	178936091	19086339	16	9859										
KIAA0232	0	genome.wustl.edu	37	chr4	6865167	6865167	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tttcttttatcttccatgaaGacttactaggagcttgtggc	8	8	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	6865167	6865167	G	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.3058	p.D1020Y	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	106	0	0	63	23	26.74	-	-	-	T	6865167	G	T	6865167	3	4	164	1	0	0	0	0	1	0	0	0	8215	942	33	2	3076	2	KIAA0232	4	6865167	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		6865167	184289109	17	9860										
ANKRD17	0	genome.wustl.edu	37	chr4	74124127	74124127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gtcgctgtcgctgctgctttCgctgctgctggggggtcggc	17	12	0	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	74124127	74124127	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.259	p.E87K	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	90	0	0	28	24	46.15	-	-	-	T	74124127	C	T	74124127	3	4	164	1	0	0	0	0	1	0	0	0	646	893	31	1	7688	1	ANKRD17	4	74124127	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	67258960	74124127	117030149	18	9861										
TRPC3	0	genome.wustl.edu	37	chr4	122853549	122853549	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gccagccccttgtaggcattGatcctcgagcgtgagtggct	13	12	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	122853549	122853549	G	A	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	silent	c.864	p.I288	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	39	0	0	10	26	70.27	-	-	-	A	122853549	G	A	122853549	2	1	164	1	0	0	0	0	0	0	0	1	16675	1280	45	2		2	TRPC3	4	122853549	Silent	SNP	G	TCGA-A8-A075-01A-11D-A099-09	48729422	122853549	68300727	19	9862										
SYCP2L	0	genome.wustl.edu	37	chr6	10926595	10926595	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ttgcctgaccagacgaaaatCtcctcagaactttttagtaa	6	10	2	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	10926595	10926595	C	T	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	silent	c.1242	p.I414	0.000	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	139	0	0	159	37	18.69	-	-	-	T	10926595	C	T	10926595	2	4	164	1	0	0	0	0	0	0	0	1	15525	903	32	2		2	SYCP2L	6	10926595	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09		10926595	160188472	20	9863										
RUNX2	0	genome.wustl.edu	37	chr6	45513000	45513000	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgcctctggccttccactctCagtaagaagagccaggcagg	11	13	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	45513000	45513000	C	T	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	silent	c.1272	p.L424	1.000	NULL	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	75	0	0	42	24	36.36	-	-	-	T	45513000	C	T	45513000	2	4	164	1	0	0	0	0	0	0	0	1	13834	813	29	2		2	RUNX2	6	45513000	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	34586405	45513000	125602067	21	9864										
CYB5R4	0	genome.wustl.edu	37	chr6	84574045	84574045	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgattgttggatatgcataaGaggtaggtggtatttattaa	12	1	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	84574045	84574045	G	C	SNP	CYB5R4	ENST00000369681	human	ensembl	69_37n	1	known	missense	c.227	p.R76T	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5	pfam_Cyt_B5,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_domain,superfamily_Cyt_B5,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Cyt_B5,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5	-	no_errors	CYB5R4	HGNC	ENSG00000065615	105	0	0	119	55	31.61	-	-	-	C	84574045	G	C	84574045	3	2	164	1	0	0	0	0	1	0	0	0	4160	942	33	2	233	2	CYB5R4	6	84574045	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	39061045	84574045	86541022	22	9865										
NT5E	0	genome.wustl.edu	37	chr6	86201757	86201757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gagtagtcaaattagatgttCtttgcaccaagtgtcgagtg	11	6	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	86201757	86201757	C	G	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	1	known	missense	c.1423	p.L475V	0.999	pfam_5'-Nucleotdase_C,superfamily_5'-Nucleotdase_C	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	180	0	0	115	41	26.28	-	-	-	G	86201757	C	G	86201757	3	3	164	1	0	0	0	0	1	0	0	0	10766	913	32	2	1453	2	NT5E	6	86201757	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	1627712	86201757	84913310	23	9866										
HS3ST5	0	genome.wustl.edu	37	chr6	114378677	114378677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgagctgaagttctggcagaGgttccgtgatgaggcgatct	15	8	2	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	114378677	114378677	G	A	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	missense	c.785	p.P262L	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	258	0	0	179	81	31.15	-	-	-	A	114378677	G	A	114378677	3	1	164	1	0	0	0	0	1	0	0	0	7419	1000	35	4	259	4	HS3ST5	6	114378677	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	28176920	114378677	56736390	24	9867										
ABCA13	0	genome.wustl.edu	37	chr7	48315435	48315435	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	caccttacaactttgaagaaCtatggcccaagtttcaacaa	5	11	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	7	48315435	48315435	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.6172	p.L2058V	0.001	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	78	0	0	96	25	20.66	-	-	-	G	48315435	C	G	48315435	3	3	164	1	0	0	0	0	1	0	0	0	31	564	20	4	6067	4	ABCA13	7	48315435	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09		48315435	110823228	25	9868										
PCLO	0	genome.wustl.edu	37	chr7	82582602	82582602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gggaaagtggggaggtagggGaaggcaatttataatctgct	17	3	1	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	7	82582602	82582602	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.7667	p.S2556F	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	122	0	0	55	51	47.66	-	-	-	A	82582602	G	A	82582602	3	1	164	1	0	0	0	0	1	0	0	0	11656	1174	41	2	7862	2	PCLO	7	82582602	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	34267167	82582602	76556061	26	9869										
RGS20	0	genome.wustl.edu	37	chr8	54866817	54866817	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ctaataaaaacattattgaaGagaaagcaaggataatctat	6	4	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	54866817	54866817	G	C	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	1	known	missense	c.925	p.E309Q	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	39	0	0	116	18	13.43	-	-	-	C	54866817	G	C	54866817	3	2	164	1	0	0	0	0	1	0	0	0	13387	943	33	2	1016	2	RGS20	8	54866817	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		54866817	91497205	27	9870										
YTHDF3	0	genome.wustl.edu	37	chr8	64099880	64099880	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgttccattaaatactctatCtggtgtagtactgagcatgg	9	8	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	64099880	64099880	C	G	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	196	0	0	231	36	13.48	-	-	-	G	64099880	C	G	64099880	1	3	164	0	1	0	0	0	0	0	0	0	17597	913	32	2		2	YTHDF3	8	64099880	RNA	SNP	C	TCGA-A8-A075-01A-11D-A099-09	9233063	64099880	82264142	28	9871										
TMEM70	0	genome.wustl.edu	37	chr8	74893669	74893669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tacagtgtttcaccagaatgAtgtgaagattccagatgcta	9	7	1	5			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	74893669	74893669	A	G	SNP	TMEM70	ENST00000312184	human	ensembl	69_37n	1	known	missense	c.596	p.D199G	1.000	pfam_DUF1301_TMEM70	pfam_DUF1301_TMEM70	-	no_errors	TMEM70	HGNC	ENSG00000175606	141	0	0	203	24	10.57	-	-	-	G	74893669	A	G	74893669	3	3	164	1	0	0	0	0	1	0	0	0	16294	333	12	5	614	5	TMEM70	8	74893669	Missense_Mutation	SNP	A	TCGA-A8-A075-01A-11D-A099-09	10793789	74893669	71470353	29	9872										
TMEM74	0	genome.wustl.edu	37	chr8	109796543	109796543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tggaagaggcaaatctgtttCgacgatagagctcccccttc	10	11	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	109796543	109796543	C	T	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.785	p.R262Q	0.978	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	142	0	0	291	43	12.84	-	-	-	T	109796543	C	T	109796543	3	4	164	1	0	0	0	0	1	0	0	0	16297	884	31	1	136	1	TMEM74	8	109796543	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	34902874	109796543	36567479	30	9873										
CYHR1	0	genome.wustl.edu	37	chr8	145678614	145678614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ccctcagttacctgtcctggCattcctctttctggtgcctc	7	16	3	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	145678614	145678614	C	T	SNP	CYHR1	ENST00000438911	human	ensembl	69_37n	-1	known	missense	c.476	p.C159Y	1.000	superfamily_TRAF-like,pfscan_Znf_TRAF	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	CYHR1	HGNC	ENSG00000187954	38	0	0	80	63	44.06	-	-	-	T	145678614	C	T	145678614	3	4	164	1	0	0	0	0	1	0	0	0	4171	710	25	4	624	4	CYHR1	8	145678614	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	35882071	145678614	685408	31	9874										
STOML2	0	genome.wustl.edu	37	chr9	35101259	35101259	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tctagaactgtggcccgtttCcgccgctctgcctccacctg	9	17	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	35101259	35101259	C	T	SNP	STOML2	ENST00000356493	human	ensembl	69_37n	-1	known	silent	c.597	p.R199	1.000	pfam_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML2	HGNC	ENSG00000165283	119	0	0	78	27	25.71	-	-	-	T	35101259	C	T	35101259	2	4	164	1	0	0	0	0	0	0	0	1	15405	842	30	2		2	STOML2	9	35101259	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09		35101259	106112172	32	9875										
RNF38	0	genome.wustl.edu	37	chr9	36344831	36344831	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tcagaaaaatttacttacaaAgtctgttctgactggtggtt	8	6	3	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	36344831	36344831	A	G	SNP	RNF38	ENST00000259605	human	ensembl	69_37n	-1	known	silent	c.1383	p.T461	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075	213	0	0	152	49	24.38	-	-	-	G	36344831	A	G	36344831	2	3	164	1	0	0	0	0	0	0	0	1	13576	59	3	5		5	RNF38	9	36344831	Silent	SNP	A	TCGA-A8-A075-01A-11D-A099-09	1243572	36344831	104868600	33	9876										
DAPK1	0	genome.wustl.edu	37	chr9	90252867	90252867	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgggttctcagcgttgcaggTggcgagctgtttgacttctt	14	9	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	90252867	90252867	T	A	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	silent	c.294	p.G98	0.994	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	196	0	0	98	32	24.62	-	-	-	A	90252867	T	A	90252867	2	1	164	1	0	0	0	0	0	0	0	1	4267	1683	59	5		5	DAPK1	9	90252867	Silent	SNP	T	TCGA-A8-A075-01A-11D-A099-09	53908036	90252867	50960564	34	9877										
SHC3	0	genome.wustl.edu	37	chr9	91660705	91660705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agtcttcgccaaaagtgtctCctaagtgtcttccctggtaa	8	11	3	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	91660705	91660705	C	T	SNP	SHC3	ENST00000375835	human	ensembl	69_37n	-1	known	missense	c.1157	p.G386E	1.000	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2,prints_PID_domain,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082	349	0	0	190	79	29.37	-	-	-	T	91660705	C	T	91660705	3	4	164	1	0	0	0	0	1	0	0	0	14361	855	30	2	643	2	SHC3	9	91660705	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	1407838	91660705	49552726	35	9878										
SMC2	0	genome.wustl.edu	37	chr9	106887243	106887243	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aagaaatccaaagaaaagcaGaagaaaaatatgaagtattg	8	3	0	5			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	106887243	106887243	G	A	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	missense	c.2308	p.E770K	1.000	NULL	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	73	0	0	79	56	41.48	-	-	-	A	106887243	G	A	106887243	3	1	164	1	0	0	0	0	1	0	0	0	14872	943	33	2	2374	2	SMC2	9	106887243	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	15226538	106887243	34326188	36	9879										
PITRM1	0	genome.wustl.edu	37	chr10	3181215	3181215	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgacagccttcccaaaagacTggagcgtctctattgtattt	8	11	1	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	3181215	3181215	T	A	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.2801	p.Q934L	0.120	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	145	0	0	50	80	61.54	-	-	-	A	3181215	T	A	3181215	3	1	164	1	0	0	0	0	1	0	0	0	12027	1580	55	5	327	5	PITRM1	10	3181215	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09		3181215	132353532	37	9880										
NRP1	0	genome.wustl.edu	37	chr10	33502337	33502337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgccttgcgtttgctgtcatCcatgatcatcttccagtccg	8	14	3	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	33502337	33502337	C	T	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	missense	c.1591	p.D531N	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	109	0	0	70	27	27.55	-	-	-	T	33502337	C	T	33502337	3	4	164	1	0	0	0	0	1	0	0	0	10733	855	30	2	1227	2	NRP1	10	33502337	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	30321122	33502337	102032410	38	9881										
NRP1	0	genome.wustl.edu	37	chr10	33545247	33545247	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aatgaataaacactgaccttCtgagacactgctctgcaaga	7	10	2	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	33545247	33545247	C	A	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	nonsense	c.811	p.E271*	1.000	pirsf_Neuropilin	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	92	0	0	81	36	30.77	-	-	-	A	33545247	C	A	33545247	4	1	164	1	0	0	0	0	0	1	0	0	10733	922	32	2	2023	2	NRP1	10	33545247	Nonsense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	42910	33545247	101989500	39	9882										
PDE6C	0	genome.wustl.edu	37	chr10	95422824	95422824	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aagaaatcacacctatgctgAgtggtcttcagaataacaga	8	8	3	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	95422824	95422824	A	T	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.2407	p.S803C	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	154	0	0	245	51	17.23	-	-	-	T	95422824	A	T	95422824	3	4	164	1	0	0	0	0	1	0	0	0	11720	304	11	5	2489	5	PDE6C	10	95422824	Missense_Mutation	SNP	A	TCGA-A8-A075-01A-11D-A099-09	61877577	95422824	40111923	40	9883										
SBF2	0	genome.wustl.edu	37	chr11	10014057	10014057	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tactttagtgaggaaatcatTctcgaccaaaccacgctgcc	7	12	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	10014057	10014057	T	G	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.1201	p.N401H	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	127	0	0	97	50	34.01	-	-	-	G	10014057	T	G	10014057	3	3	164	1	0	0	0	0	1	0	0	0	13946	1783	62	5	4464	5	SBF2	11	10014057	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09		10014057	124992459	41	9884										
AMBRA1	0	genome.wustl.edu	37	chr11	46419132	46419132	+	Frame_Shift_Del	DEL	G	G	-													0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ctgggaagggaaacaggaatGgggacaggggaggaagaggg							TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	46419132	46419132	G	-	DEL	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	frame_shift_del	c.3765	p.I1256fs	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	111	0	0	127	46	25.84	-	-	-	-	46419132	G	-	46419132	7	5	164	1	0	1	0	1	0	0	0	0	565	1335	47	0	135	0	AMBRA1	11	46419132	Frame_Shift_Del	DEL	G	TCGA-A8-A075-01A-11D-A099-09	36405075	46419132	88587384	42	9885										
CEP164	0	genome.wustl.edu	37	chr11	117263223	117263223	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cctcctcaggtggtctccagCctccagaagaagatacagga	10	13	2	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	117263223	117263223	C	G	SNP	CEP164	ENST00000278935	human	ensembl	69_37n	1	known	missense	c.2373	p.S791R	0.922	NULL	superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	CEP164	HGNC	ENSG00000110274	111	0	0	75	43	36.44	-	-	-	G	117263223	C	G	117263223	3	3	164	1	0	0	0	0	1	0	0	0	3278	738	26	4	2439	4	CEP164	11	117263223	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	70844091	117263223	17743293	43	9886										
ARHGEF12	0	genome.wustl.edu	37	chr11	120352172	120352172	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ttctggtccagcagcgctggGgagctatggagtattcctgt	14	9	1	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	120352172	120352172	G	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	nonsense	c.4384	p.G1462*	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	115	0	0	92	48	34.29	-	-	-	T	120352172	G	T	120352172	4	4	164	1	0	0	0	0	0	1	0	0	899	1233	43	4	4595	4	ARHGEF12	11	120352172	Nonsense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	3088949	120352172	14654344	44	9887										
ARHGDIB	0	genome.wustl.edu	37	chr12	15095600	15095600	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tcctcaactggagtgaggaaCtcatactcctcaggccgagg	11	12	3	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	15095600	15095600	C	A	SNP	ARHGDIB	ENST00000228945	human	ensembl	69_37n	-1	known	missense	c.462	p.E154D	1.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIB	HGNC	ENSG00000111348	87	0	0	51	13	20.31	-	-	-	A	15095600	C	A	15095600	3	1	164	1	0	0	0	0	1	0	0	0	893	564	20	4	147	4	ARHGDIB	12	15095600	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09		15095600	118756295	45	9888										
LRMP	0	genome.wustl.edu	37	chr12	25254214	25254214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aattagaagaactgaaacagGttcttctgcagaatgaaagg	10	5	2	5			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	25254214	25254214	G	T	SNP	LRMP	ENST00000354454	human	ensembl	69_37n	1	known	missense	c.844	p.V282F	0.986	pfam_MRVI1	pfam_MRVI1	-	no_errors	LRMP	HGNC	ENSG00000118308	105	0	0	145	32	18.08	-	-	-	T	25254214	G	T	25254214	3	4	164	1	0	0	0	0	1	0	0	0	9016	1261	44	4	886	4	LRMP	12	25254214	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	10158614	25254214	108597681	46	9889										
KRT86	0	genome.wustl.edu	37	chr12	52700002	52700002	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	taccaggaggtgatgaactcCaagctgggcctggacatcga	13	10	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	52700002	52700002	C	G	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	silent	c.1185	p.S395	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	87	0	0	69	21	23.33	-	-	-	G	52700002	C	G	52700002	2	3	164	1	0	0	0	0	0	0	0	1	8553	581	21	4		4	KRT86	12	52700002	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	27445788	52700002	81151893	47	9890										
NCKAP1L	0	genome.wustl.edu	37	chr12	54917613	54917613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tcattttcctttctagcatgGacaagctacacctaaacttg	5	11	2	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	54917613	54917613	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.2029	p.D677N	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	142	0	0	106	28	20.74	-	-	-	A	54917613	G	A	54917613	3	1	164	1	0	0	0	0	1	0	0	0	10294	1174	41	2	2107	2	NCKAP1L	12	54917613	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	2217611	54917613	78934282	48	9891										
STAT6	0	genome.wustl.edu	37	chr12	57500358	57500358	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agtttctatcaagctgtgcaGagacactgagggttgggggc	15	7	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	57500358	57500358	G	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	silent	c.484	p.L162	0.984	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	273	0	0	120	60	33.33	-	-	-	A	57500358	G	A	57500358	2	1	164	1	0	0	0	0	0	0	0	1	15361	933	33	2		2	STAT6	12	57500358	Silent	SNP	G	TCGA-A8-A075-01A-11D-A099-09	2582745	57500358	76351537	49	9892										
LRIG3	0	genome.wustl.edu	37	chr12	59271267	59271267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agtgacgtgcccaccacacaGcaaaccacggctatgatcac	8	15	1	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	59271267	59271267	G	C	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.2451	p.C817W	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	113	0	0	116	58	33.33	-	-	-	C	59271267	G	C	59271267	3	2	164	1	0	0	0	0	1	0	0	0	9012	963	34	4	928	4	LRIG3	12	59271267	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	1770909	59271267	74580628	50	9893										
CDK17	0	genome.wustl.edu	37	chr12	96728499	96728499	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cctatgccaaatatttaccaTtatccttgctgctgttttct	4	11	1	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	96728499	96728499	T	C	SNP	CDK17	ENST00000261211	human	ensembl	69_37n	-1	known	missense	c.116	p.N39S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK17	HGNC	ENSG00000059758	328	0	0	296	70	19.13	-	-	-	C	96728499	T	C	96728499	3	2	164	1	0	0	0	0	1	0	0	0	3162	1493	52	5	1557	5	CDK17	12	96728499	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09	37457232	96728499	37123396	51	9894										
LCP1	0	genome.wustl.edu	37	chr13	46701847	46701847	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ctccaatttttcgggccataGagatggcatatctaaaaggg	10	8	1	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	13	46701847	46701847	G	A	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	missense	c.1763	p.S588F	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	135	0	0	96	46	32.39	-	-	-	A	46701847	G	A	46701847	3	1	164	1	0	0	0	0	1	0	0	0	8745	942	33	2	124	2	LCP1	13	46701847	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		46701847	68468031	52	9895										
CASC4	0	genome.wustl.edu	37	chr15	44630015	44630015	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aggaattggatataaacaatCaagtagtacctaaaaatatt	6	4	1	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	15	44630015	44630015	C	G	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.631	p.Q211E	0.981	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	122	0	0	128	82	39.05	-	-	-	G	44630015	C	G	44630015	3	3	164	1	0	0	0	0	1	0	0	0	2687	827	29	2	649	2	CASC4	15	44630015	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09		44630015	57901377	53	9896										
WDR93	0	genome.wustl.edu	37	chr15	90258281	90258281	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ctcaagaaactagagcacccCcaactcacttcaaatccaaa	3	15	3	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	15	90258281	90258281	C	T	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	silent	c.711	p.P237	0.014	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	184	0	0	210	32	13.22	-	-	-	T	90258281	C	T	90258281	2	4	164	1	0	0	0	0	0	0	0	1	17437	610	22	4		4	WDR93	15	90258281	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09	45628266	90258281	12273111	54	9897										
ZNF434	0	genome.wustl.edu	37	chr16	3432953	3432953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agtgaagcctctctcacagtGagaacacctgtaaggctttt	9	10	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	16	3432953	3432953	G	A	SNP	ZNF434	ENST00000396846	human	ensembl	69_37n	-1	known	missense	c.1993	p.H665Y	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF434	HGNC	ENSG00000140987	209	0	0	145	65	30.95	-	-	-	A	3432953	G	A	3432953	3	1	164	1	0	0	0	0	1	0	0	0	18004	1290	45	2	104	2	ZNF434	16	3432953	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		3432953	86921800	55	9898										
RBBP6	0	genome.wustl.edu	37	chr16	24582488	24582488	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aagtatcctgagaaagaaagTgagccatccgagaaaattca	9	7	1	4			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	16	24582488	24582488	T	G	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.4101	p.S1367R	0.047	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	32	0	0	63	30	32.26	-	-	-	G	24582488	T	G	24582488	3	3	164	1	0	0	0	0	1	0	0	0	13186	1693	59	5	4225	5	RBBP6	16	24582488	Missense_Mutation	SNP	T	TCGA-A8-A075-01A-11D-A099-09	21149535	24582488	65772265	56	9899										
TP53	0	genome.wustl.edu	37	chr17	7578370	7578370	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tctccagccccagctgctcaCcatcgctatctgagcagcgc	8	18	3	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	7578370	7578370	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	82	0	0	29	39	57.35	-	-	-	A	7578370	C	A	7578370	5	1	164	1	0	0	0	0	0	0	1	0	16477	521	18	4	738	4	TP53	17	7578370	Splice_Site	SNP	C	TCGA-A8-A075-01A-11D-A099-09		7578370	73616840	57	9900										
COL1A1	0	genome.wustl.edu	37	chr17	48270012	48270012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aggcctcacctggaatccggGggagccagcagggccttgtt	15	12	1	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	48270012	48270012	G	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.1918	p.P640T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	137	0	0	99	66	40	-	-	-	T	48270012	G	T	48270012	3	4	164	1	0	0	0	0	1	0	0	0	3707	1232	43	4	2572	4	COL1A1	17	48270012	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	40691642	48270012	32925198	58	9901										
SDK2	0	genome.wustl.edu	37	chr17	71410870	71410870	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gtggaattggtggcttccgcGtgcacattgcccggagggac	16	10	0	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	71410870	71410870	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	silent	c.2397	p.H799	0.682	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	86	0	0	95	20	17.39	-	-	-	A	71410870	G	A	71410870	2	1	164	1	0	0	0	0	0	0	0	1	14057	1136	40	1		1	SDK2	17	71410870	Silent	SNP	G	TCGA-A8-A075-01A-11D-A099-09	23140858	71410870	9784340	59	9902										
KIAA0195	0	genome.wustl.edu	37	chr17	73490986	73490987	+	Frame_Shift_Ins	INS	-	-	A													0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cctttcacaggtgtttgcagINSaaaaaatgggcctggagaca							TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	73490986	73490987	-	A	INS	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	frame_shift_ins	c.2599_2600	p.M869fs	1.000:1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	27	0	0	14	18	56.25	-	-	-	A	73490987	-	A	73490986	7	5	164	1	0	1	1	0	0	0	0	0	8212	943	33	0	2673	0	KIAA0195	17	73490986	Frame_Shift_Ins	INS	-	TCGA-A8-A075-01A-11D-A099-09	2080116	73490986	7704224	60	9903										
GPR108	0	genome.wustl.edu	37	chr19	6731903	6731903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	tgcaggcgcagggcctcaccCttcccgtctgtgccagacgc	12	17	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	6731903	6731903	C	T	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	silent	c.1299	p.K433	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	24	0	0	25	8	24.24	-	-	-	T	6731903	C	T	6731903	2	4	164	1	0	0	0	0	0	0	0	1	6674	695	24	4		4	GPR108	19	6731903	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09		6731903	52397080	61	9904										
MUC16	0	genome.wustl.edu	37	chr19	9057075	9057075	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	atgtagccttggatggctccGagtggattgaaacagaggaa	14	6	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	9057075	9057075	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.30371	p.S10124W	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	127	0	0	59	32	35.16	-	-	-	C	9057075	G	C	9057075	3	2	164	1	0	0	0	0	1	0	0	0	10045	1059	37	3	13480	3	MUC16	19	9057075	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	2325172	9057075	50071908	62	9905										
MUC16	0	genome.wustl.edu	37	chr19	9064046	9064046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cttgtatcccccatggtggaGgtggtacacattggagatga	13	8	0	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	9064046	9064046	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.23400	p.T7800	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	290	0	0	142	50	26.04	-	-	-	A	9064046	G	A	9064046	2	1	164	1	0	0	0	0	0	0	0	1	10045	987	35	4		4	MUC16	19	9064046	Silent	SNP	G	TCGA-A8-A075-01A-11D-A099-09	6971	9064046	50064937	63	9906										
CACNA1A	0	genome.wustl.edu	37	chr19	13340904	13340904	+	Frame_Shift_Del	DEL	G	G	-													0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	gtgacttcttaccaagctgcGgggtcatactcggcccagac							TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	13340904	13340904	G	-	DEL	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	frame_shift_del	c.5520	p.A1841fs	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	85	0	0	97	35	25.74	-	-	-	-	13340904	G	-	13340904	7	5	164	1	0	1	0	1	0	0	0	0	2563	1103	39	0	2149	0	CACNA1A	19	13340904	Frame_Shift_Del	DEL	G	TCGA-A8-A075-01A-11D-A099-09	4276858	13340904	45788079	64	9907										
CPAMD8	0	genome.wustl.edu	37	chr19	17015133	17015133	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cacccagcagagtgtaggtcAgaagggcgtaggctgtcatt	14	9	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	17015133	17015133	A	G	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.4295	p.L1432P	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	65	0	0	58	12	17.14	-	-	-	G	17015133	A	G	17015133	3	3	164	1	0	0	0	0	1	0	0	0	3825	188	7	5	1547	5	CPAMD8	19	17015133	Missense_Mutation	SNP	A	TCGA-A8-A075-01A-11D-A099-09	3674229	17015133	42113850	65	9908										
FBXO17	0	genome.wustl.edu	37	chr19	39409429	39409429	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cactgctccgcggagaaggtCtggcaccgtcatgggggtga	16	11	2	2			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	39409429	39409429	C	T	SNP	FBXO17	ENST00000430193	human	ensembl	69_37n	-1	known	missense	c.790	p.D264N	1.000	pirsf_Ser-tRNA-synth_IIa,pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	pirsf_Ser-tRNA-synth_IIa,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	FBXO17	HGNC	ENSG00000104835	42	0	0	17	28	62.22	-	-	-	T	39409429	C	T	39409429	3	4	164	1	0	0	0	0	1	0	0	0	5776	913	32	2		2	FBXO17	19	39409429	Missense_Mutation	SNP	C	TCGA-A8-A075-01A-11D-A099-09	22394296	39409429	19719554	66	9909										
EDEM2	0	genome.wustl.edu	37	chr20	33711728	33711728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	agccctctcgcttctccactGtgtatccctgaggaatgttg	9	13	2	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	20	33711728	33711728	G	T	SNP	EDEM2	ENST00000374492	human	ensembl	69_37n	-1	known	missense	c.1079	p.T360K	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298	103	0	0	144	35	19.44	-	-	-	T	33711728	G	T	33711728	3	4	164	1	0	0	0	0	1	0	0	0	4947	1377	48	4	669	4	EDEM2	20	33711728	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		33711728	29313792	67	9910										
DDX27	0	genome.wustl.edu	37	chr20	47839853	47839853	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	aaaaggagaaagaagcaaagGaaggctctgaaccaaaggag	13	5	1	3			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	20	47839853	47839853	G	T	SNP	DDX27	ENST00000371764	human	ensembl	69_37n	1	known	nonsense	c.442	p.E148*	0.004	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228	76	0	0	130	71	35.15	-	-	-	T	47839853	G	T	47839853	4	4	164	1	0	0	0	0	0	1	0	0	4385	1175	41	2	456	2	DDX27	20	47839853	Nonsense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09	14128125	47839853	15185667	68	9911										
SLC5A4	0	genome.wustl.edu	37	chr22	32631034	32631034	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	actacggatggggtggcattCacgtacttctcggtaaagct	12	9	2	0			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	22	32631034	32631034	C	T	SNP	SLC5A4	ENST00000266086	human	ensembl	69_37n	-1	known	silent	c.711	p.V237	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191	136	0	0	53	56	51.38	-	-	-	T	32631034	C	T	32631034	2	4	164	1	0	0	0	0	0	0	0	1	14756	813	29	2		2	SLC5A4	22	32631034	Silent	SNP	C	TCGA-A8-A075-01A-11D-A099-09		32631034	18673532	69	9912										
SHROOM2	0	genome.wustl.edu	37	chrX	9863794	9863794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	cgccaccgttcgacgcccacGtgggcaagcccacccgaaga	11	18	0	1			TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	X	9863794	9863794	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.1846	p.V616M	0.007	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	11	0	0	18	7	28	-	-	-	A	9863794	G	A	9863794	3	1	164	1	0	0	0	0	1	0	0	0	14383	1145	40	1	1860	1	SHROOM2	23	9863794	Missense_Mutation	SNP	G	TCGA-A8-A075-01A-11D-A099-09		9863794	145406766	70	9913										
ATRX	0	genome.wustl.edu	37	chrX	76949382	76949382	+	Frame_Shift_Del	DEL	C	C	-													0.23943661971831	17	0.00118332009872276	2.52515930564711	2.81081081081081	2.39253539253539	0.191355499233818	0.763859911227241	10	ttcaggccctttaaaatcatCtttgtcttcattcagcactg							TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	X	76949382	76949382	C	-	DEL	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	frame_shift_del	c.415	p.D139fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	537	0	0	320	70	17.33	-	-	-	-	76949382	C	-	76949382	7	5	164	1	0	1	0	1	0	0	0	0	1212	913	32	0	7183	0	ATRX	23	76949382	Frame_Shift_Del	DEL	C	TCGA-A8-A075-01A-11D-A099-09	67085588	76949382	78321178	71	9914										
TRIB2	0	genome.wustl.edu	37	chr2	12863563	12863563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	cctgcaagaagctgagagagGaggaggcagccagactgttc	15	9	0	4			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	2	12863563	12863563	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	missense	c.448	p.E150K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	52	0	0	24	22	47.83	-	-	-	A	12863563	G	A	12863563	3	1	165	1	0	0	0	0	1	0	0	0	16579	1175	41	2	454	2	TRIB2	2	12863563	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		12863563	230335810	1	9915										
LTBP1	0	genome.wustl.edu	37	chr2	33622241	33622241	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	agttacaggctgaggaatgcGgcatcctcaatggatgtgaa	13	7	1	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	2	33622241	33622241	G	C	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.4879	p.G1627R	1.000	superfamily_TB_dom,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	69	0	0	49	31	38.27	-	-	-	C	33622241	G	C	33622241	3	2	165	1	0	0	0	0	1	0	0	0	9139	1116	39	3	5061	3	LTBP1	2	33622241	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	20758678	33622241	209577132	2	9916										
IL1RL2	0	genome.wustl.edu	37	chr2	102851497	102851497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	acagtgccctgatccaggacGggatgaaggttattctcatt	11	9	1	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	2	102851497	102851497	G	A	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.1438	p.G480R	0.991	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	117	0	0	82	16	16.33	-	-	-	A	102851497	G	A	102851497	3	1	165	1	0	0	0	0	1	0	0	0	7718	1116	39	1	1476	1	IL1RL2	2	102851497	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	69229256	102851497	140347876	3	9917										
TRAK2	0	genome.wustl.edu	37	chr2	202260102	202260102	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ggaaagctcttcttggtatcGaatcagctcatcactcttcc	7	12	6	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	2	202260102	202260102	G	A	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	nonsense	c.835	p.R279*	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	257	0	0	209	119	36.28	-	-	-	A	202260102	G	A	202260102	4	1	165	1	0	0	0	0	0	1	0	0	16546	1066	37	1	1945	1	TRAK2	2	202260102	Nonsense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	99408605	202260102	40939271	4	9918										
BSN	0	genome.wustl.edu	37	chr3	49701899	49701899	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ggaggaaccccaggggctccCgccggccagccaggtgccga	16	16	0	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	3	49701899	49701899	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	silent	c.11652	p.P3884	0.700	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	56	0	0	24	4	14.29	-	-	-	T	49701899	C	T	49701899	2	4	165	1	0	0	0	0	0	0	0	1	1538	639	23	1		1	BSN	3	49701899	Silent	SNP	C	TCGA-A8-A076-01A-21W-A019-09		49701899	148320531	5	9919										
BBS7	0	genome.wustl.edu	37	chr4	122765151	122765151	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tcaagtaaatctattggaacAtcactctatagtcaatatta	4	7	5	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	4	122765151	122765151	A	G	SNP	BBS7	ENST00000264499	human	ensembl	69_37n	-1	known	silent	c.1236	p.D412	1.000	pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686	39	0	0	32	14	30.43	-	-	-	G	122765151	A	G	122765151	2	3	165	1	0	0	0	0	0	0	0	1	1345	214	8	5		5	BBS7	4	122765151	Silent	SNP	A	TCGA-A8-A076-01A-21W-A019-09		122765151	68389125	6	9920										
KIAA0947	0	genome.wustl.edu	37	chr5	5437196	5437196	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tcttttcttttttgcagtaaTttgttaacagaatatcagaa	5	5	3	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	5	5437196	5437196	T	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.147	p.N49K	1.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	12	0	0	16	14	46.67	-	-	-	A	5437196	T	A	5437196	3	1	165	1	0	0	0	0	1	0	0	0	8254	1490	52	5	157	5	KIAA0947	5	5437196	Missense_Mutation	SNP	T	TCGA-A8-A076-01A-21W-A019-09		5437196	175478064	7	9921										
F13A1	0	genome.wustl.edu	37	chr6	6197531	6197531	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	aggaaggtcaggccttgtcaTccatgcttcattccagcagt	10	11	3	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	6	6197531	6197531	T	A	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	missense	c.1141	p.M381L	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	82	0	0	109	14	11.38	-	-	-	A	6197531	T	A	6197531	3	1	165	1	0	0	0	0	1	0	0	0	5377	1435	50	5	1085	5	F13A1	6	6197531	Missense_Mutation	SNP	T	TCGA-A8-A076-01A-21W-A019-09		6197531	164917536	8	9922										
CUL7	0	genome.wustl.edu	37	chr6	43016263	43016263	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tggaccataaccctccaccaGacgctgcaggggagtgttgg	13	12	0	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	6	43016263	43016263	G	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.2122	p.L708M	0.237	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	172	0	0	198	34	14.59	-	-	-	T	43016263	G	T	43016263	3	4	165	1	0	0	0	0	1	0	0	0	4091	933	33	2	3302	2	CUL7	6	43016263	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	36818732	43016263	128098804	9	9923										
RIMS1	0	genome.wustl.edu	37	chr6	73110213	73110213	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tgcaggtgattgtctggggaGactatggcagaatggaccac	15	7	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	6	73110213	73110213	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.4876	p.D1626N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	260	1	0.38	97	59	37.82	-	-	-	A	73110213	G	A	73110213	3	1	165	1	0	0	0	0	1	0	0	0	13453	942	33	2	5173	2	RIMS1	6	73110213	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	30093950	73110213	98004854	10	9924										
MTO1	0	genome.wustl.edu	37	chr6	74191938	74191938	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ccgtttgtcactgcgccctgAtaatgctgacagccggctca	10	14	2	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	6	74191938	74191938	A	T	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.1556	p.D519V	1.000	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	83	0	0	44	26	37.14	-	-	-	T	74191938	A	T	74191938	3	4	165	1	0	0	0	0	1	0	0	0	10025	333	12	5	1669	5	MTO1	6	74191938	Missense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09	1081725	74191938	96923129	11	9925										
CARD11	0	genome.wustl.edu	37	chr7	2968322	2968323	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	catgatgctgctgcggctccINSgggggggctgcttcagacac							TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	2968322	2968323	-	G	INS	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1664_1663	p.R555fs	0.395:0.080	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	22	0	0	17	2	10.53	-	-	-	G	2968323	-	G	2968322	7	5	165	1	0	1	1	0	0	0	0	0	2670	652	23	0	1852	0	CARD11	7	2968322	Frame_Shift_Ins	INS	-	TCGA-A8-A076-01A-21W-A019-09		2968322	156170341	12	9926										
THSD7A	0	genome.wustl.edu	37	chr7	11521471	11521471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gtatctgtttcccttctgtcGttttccctgagcaggtgtgt	10	10	2	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	11521471	11521471	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.1961	p.T654M	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	175	0	0	177	75	29.76	-	-	-	A	11521471	G	A	11521471	3	1	165	1	0	0	0	0	1	0	0	0	15974	1145	40	1	3096	1	THSD7A	7	11521471	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	8553149	11521471	147617192	13	9927										
PKD1L1	0	genome.wustl.edu	37	chr7	47852858	47852858	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gggactacatgtaggaatagAgtcttcgatgagtgctgaaa	13	5	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	47852858	47852858	A	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.7207	p.S2403T	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	51	0	0	25	27	50.94	-	-	-	T	47852858	A	T	47852858	3	4	165	1	0	0	0	0	1	0	0	0	12038	304	11	5	1378	5	PKD1L1	7	47852858	Missense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09	36331387	47852858	111285805	14	9928										
ZNF716	0	genome.wustl.edu	37	chr7	57528714	57528714	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	agacaagacatactggaaagAaacatttcaaatgtaaaaac	6	6	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	57528714	57528714	A	T	SNP	ZNF716	ENST00000420713	human	ensembl	69_37n	1	known	nonsense	c.547	p.K183*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111	92	0	0	138	43	23.76	-	-	-	T	57528714	A	T	57528714	4	4	165	1	0	0	0	0	0	1	0	0	18215	247	9	5	561	5	ZNF716	7	57528714	Nonsense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09	9675856	57528714	101609949	15	9929										
PIK3CG	0	genome.wustl.edu	37	chr7	106526628	106526628	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	cattcttgggaattacaaaaGtttcctgggcattaataaag	8	6	1	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	106526628	106526628	G	C	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	missense	c.2921	p.S974T	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	169	0	0	152	42	21.65	-	-	-	C	106526628	G	C	106526628	3	2	165	1	0	0	0	0	1	0	0	0	11990	1029	36	4	2955	4	PIK3CG	7	106526628	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	48997914	106526628	52612035	16	9930										
LAMB4	0	genome.wustl.edu	37	chr7	107717436	107717436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gtgggactctccttgcaaagGctgagaaaaatagacatcta	10	8	2	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	7	107717436	107717436	G	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.2077	p.P693T	0.662	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	143	0	0	123	25	16.78	-	-	-	T	107717436	G	T	107717436	3	4	165	1	0	0	0	0	1	0	0	0	8667	1203	42	4	3280	4	LAMB4	7	107717436	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	1190808	107717436	51421227	17	9931										
CSMD1	0	genome.wustl.edu	37	chr8	3266956	3266956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	aatactcacatacacagctgGgcttgttgccagaccactga	8	12	1	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	8	3266956	3266956	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.1736	p.P579H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	50	0	0	39	8	17.02	-	-	-	T	3266956	G	T	3266956	3	4	165	1	0	0	0	0	1	0	0	0	3976	1232	43	4		4	CSMD1	8	3266956	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		3266956	143097066	18	9932										
TNFRSF10A	0	genome.wustl.edu	37	chr8	23069723	23069723	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gttgcagctgagctaggtacGacctgtggggacaaagcagg	16	8	0	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	8	23069723	23069723	G	A	SNP	TNFRSF10A	ENST00000221132	human	ensembl	69_37n	-1	known	silent	c.309	p.V103	0.000	pirsf_TNFR_10	pirsf_TNFR_10,pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_10,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10A	HGNC	ENSG00000104689	67	0	0	57	12	17.39	-	-	-	A	23069723	G	A	23069723	2	1	165	1	0	0	0	0	0	0	0	1	16375	1045	37	1		1	TNFRSF10A	8	23069723	Silent	SNP	G	TCGA-A8-A076-01A-21W-A019-09	19802767	23069723	123294299	19	9933										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24256522	24256522	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ggcacagttctaacctggggAaaaagatccacgaccatgct	10	11	1	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	8	24256522	24256522	A	G	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	missense	c.898	p.K300E	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	72	0	0	53	15	22.06	-	-	-	G	24256522	A	G	24256522	3	3	165	1	0	0	0	0	1	0	0	0	254	247	9	5	932	5	ADAMDEC1	8	24256522	Missense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09	1186799	24256522	122107500	20	9934										
NSMAF	0	genome.wustl.edu	37	chr8	59502584	59502584	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	acacattattatcccatgaaGaagttatgacagtggcatct	7	8	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	8	59502584	59502584	G	T	SNP	NSMAF	ENST00000427130	human	ensembl	69_37n	-1	known	missense	c.2162	p.S721Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	80	0	0	59	11	15.71	-	-	-	T	59502584	G	T	59502584	3	4	165	1	0	0	0	0	1	0	0	0	10747	942	33	2	712	2	NSMAF	8	59502584	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	35246062	59502584	86861438	21	9935										
RIMS2	0	genome.wustl.edu	37	chr8	104955015	104955015	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ttgtagattttaattgaattAgaaacagcattattagatga	7	2	0	5			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	8	104955015	104955015	A	C	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2562	p.L854F	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	153	0	0	276	38	12.1	-	-	-	C	104955015	A	C	104955015	3	2	165	1	0	0	0	0	1	0	0	0	13454	417	15	5	2742	5	RIMS2	8	104955015	Missense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09	45452431	104955015	41409007	22	9936										
LRSAM1	0	genome.wustl.edu	37	chr9	130236137	130236137	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gctgccaattctggagcaagAtggaatcgagaactctcggg	13	9	2	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	9	130236137	130236137	A	G	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	missense	c.677	p.D226G	1.000	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	67	0	0	40	5	11.11	-	-	-	G	130236137	A	G	130236137	3	3	165	1	0	0	0	0	1	0	0	0	9109	333	12	5	711	5	LRSAM1	9	130236137	Missense_Mutation	SNP	A	TCGA-A8-A076-01A-21W-A019-09		130236137	10977294	23	9937										
GAD2	0	genome.wustl.edu	37	chr10	26534867	26534867	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	cagagtcatttttctctcaaGaagggagctgcagccttagg	11	9	3	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	10	26534867	26534867	G	C	SNP	GAD2	ENST00000259271	human	ensembl	69_37n	1	known	missense	c.858	p.K286N	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD2	HGNC	ENSG00000136750	48	0	0	41	6	12.77	-	-	-	C	26534867	G	C	26534867	3	2	165	1	0	0	0	0	1	0	0	0	6229	933	33	2	888	2	GAD2	10	26534867	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		26534867	108999880	24	9938										
ANK3	0	genome.wustl.edu	37	chr10	61830358	61830358	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	agtttagaatcactctctgtCaagccatcatcttcatcttg	5	11	7	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	10	61830358	61830358	C	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.10281	p.L3427F	0.998	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	170	0	0	110	114	50.89	-	-	-	A	61830358	C	A	61830358	3	1	165	1	0	0	0	0	1	0	0	0	622	825	29	2	3193	2	ANK3	10	61830358	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09	35295491	61830358	73704389	25	9939										
SFTPD	0	genome.wustl.edu	37	chr10	81701721	81701721	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	actgctcacctgctgcccctGtgtttccagggactccacgc	9	17	1	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	10	81701721	81701721	G	C	SNP	SFTPD	ENST00000372292	human	ensembl	69_37n	-1	known	missense	c.539	p.T180R	0.030	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661	56	0	0	32	29	46.77	-	-	-	C	81701721	G	C	81701721	3	2	165	1	0	0	0	0	1	0	0	0	14281	1377	48	4	604	4	SFTPD	10	81701721	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	19871363	81701721	53833026	26	9940										
PCF11	0	genome.wustl.edu	37	chr11	82877321	82877321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	acaaaaacaggatacaataaCagaagagtcagaaaaacagg	8	6	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	11	82877321	82877321	C	G	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	missense	c.1382	p.T461R	0.362	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	125	0	0	140	28	16.67	-	-	-	G	82877321	C	G	82877321	3	3	165	1	0	0	0	0	1	0	0	0	11646	478	17	4	1400	4	PCF11	11	82877321	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09		82877321	52129195	27	9941										
TMPRSS13	0	genome.wustl.edu	37	chr11	117774452	117774452	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ttctctggccacagcctgtgCcccagctggtgacacctgcc	10	17	1	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	11	117774452	117774452	C	G	SNP	TMPRSS13	ENST00000445164	human	ensembl	69_37n	-1	known	missense	c.1595	p.G532A	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_TMPRSS13,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_TMPRSS13,prints_Peptidase_S1A,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS13	HGNC	ENSG00000137747	49	0	0	21	15	41.67	-	-	-	G	117774452	C	G	117774452	3	3	165	1	0	0	0	0	1	0	0	0	16340	739	26	4	116	4	TMPRSS13	11	117774452	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09	34897131	117774452	17232064	28	9942										
KDM5A	0	genome.wustl.edu	37	chr12	432248	432249	+	Frame_Shift_Ins	INS	-	-	T													0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	caaaagaaggaaatttaaccINSttttttgtggttgaagttag							TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	432248	432249	-	T	INS	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2275_2274	p.D758fs	1.000:1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	186	0	0	140	56	28.57	-	-	-	T	432249	-	T	432248	7	5	165	1	0	1	1	0	0	0	0	0	8186	695	24	0	2849	0	KDM5A	12	432248	Frame_Shift_Ins	INS	-	TCGA-A8-A076-01A-21W-A019-09		432248	133419647	29	9943										
DUSP16	0	genome.wustl.edu	37	chr12	12630478	12630478	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	agagtagtggaaggtttgtaGtattccaaagcatcttctga	11	5	2	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	12630478	12630478	G	C	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	nonsense	c.1287	p.Y429*	0.907	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	137	0	0	60	24	28.57	-	-	-	C	12630478	G	C	12630478	4	2	165	1	0	0	0	0	0	1	0	0	4851	1024	36	4	714	4	DUSP16	12	12630478	Nonsense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	12198230	12630478	121221417	30	9944										
MLL2	0	genome.wustl.edu	37	chr12	49427744	49427744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gtgctccttctgctgtttccGgacctaacatgggagggtcg	13	11	1	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	49427744	49427744	G	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.10744	p.R3582W	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	33	0	0	5	5	50	-	-	-	A	49427744	G	A	49427744	3	1	165	1	0	0	0	0	1	0	0	0	9692	1115	39	1	5933	1	MLL2	12	49427744	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	36797266	49427744	84424151	31	9945										
LRP1	0	genome.wustl.edu	37	chr12	57573216	57573216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ccttcacggtgcccgacatcGacaacgtcacagtgctagac	9	15	2	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	57573216	57573216	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.4843	p.D1615N	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	46	0	0	15	5	25	-	-	-	A	57573216	G	A	57573216	3	1	165	1	0	0	0	0	1	0	0	0	9017	1058	37	1	4957	1	LRP1	12	57573216	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	8145472	57573216	76278679	32	9946										
SRGAP1	0	genome.wustl.edu	37	chr12	64519802	64519802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	caagtttgactatgttgggcGgtctgccagagaactatcct	11	9	1	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	64519802	64519802	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.2270	p.R757Q	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	90	0	0	65	12	15.58	-	-	-	A	64519802	G	A	64519802	3	1	165	1	0	0	0	0	1	0	0	0	15236	1116	39	1	2344	1	SRGAP1	12	64519802	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	6946586	64519802	69332093	33	9947										
GNPTAB	0	genome.wustl.edu	37	chr12	102159934	102159934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	atgcttggtcacagaacttaTcagcgagccaggaattcgca	10	10	2	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	102159934	102159934	T	C	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.1547	p.D516G	1.000	pfam_Notch_dom,superfamily_Notch_dom,smart_Notch_dom	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	391	0	0	404	192	32.21	-	-	-	C	102159934	T	C	102159934	3	2	165	1	0	0	0	0	1	0	0	0	6597	1435	50	5	2263	5	GNPTAB	12	102159934	Missense_Mutation	SNP	T	TCGA-A8-A076-01A-21W-A019-09	37640132	102159934	31691961	34	9948										
ACACB	0	genome.wustl.edu	37	chr12	109704092	109704092	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gactgtgtgatatacctgagCcagcacatcagcccagctga	10	12	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	109704092	109704092	C	A	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.7302	p.S2434R	0.999	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	45	0	0	38	18	32.14	-	-	-	A	109704092	C	A	109704092	3	1	165	1	0	0	0	0	1	0	0	0	107	738	26	4	7508	4	ACACB	12	109704092	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09	7544158	109704092	24147803	35	9949										
CIT	0	genome.wustl.edu	37	chr12	120173024	120173024	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ctcccggcggagatggtccaCttcacttcgcagttgtacaa	10	13	1	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	12	120173024	120173024	C	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.2971	p.V991L	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	107	0	0	135	37	21.51	-	-	-	A	120173024	C	A	120173024	3	1	165	1	0	0	0	0	1	0	0	0	3468	565	20	4	3208	4	CIT	12	120173024	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09	10468932	120173024	13678871	36	9950										
FLT3	0	genome.wustl.edu	37	chr13	28610163	28610163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ctgacttgccgatgcttctgCgagcacttgaggtttcccta	10	12	1	2			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	13	28610163	28610163	C	T	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	missense	c.1327	p.A443T	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	346	0	0	204	32	13.56	-	-	-	T	28610163	C	T	28610163	3	4	165	1	0	0	0	0	1	0	0	0	5988	768	27	1	1710	1	FLT3	13	28610163	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09		28610163	86559715	37	9951										
TGM1	0	genome.wustl.edu	37	chr14	24718579	24718579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	aagtgactgtcacctccagcGtctgagaagaagcccccatc	9	14	2	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	14	24718579	24718579	G	A	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	silent	c.2394	p.D798	0.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	40	0	0	17	20	54.05	-	-	-	A	24718579	G	A	24718579	2	1	165	1	0	0	0	0	0	0	0	1	15924	1136	40	1		1	TGM1	14	24718579	Silent	SNP	G	TCGA-A8-A076-01A-21W-A019-09		24718579	82630961	38	9952										
BAZ1A	0	genome.wustl.edu	37	chr14	35240774	35240774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	ctctatttgaaagagtgccaTtgccagataatgaaccacac	7	10	1	4			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	14	35240774	35240774	T	C	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.3244	p.M1082V	0.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	210	0	0	341	61	15.14	-	-	-	C	35240774	T	C	35240774	3	2	165	1	0	0	0	0	1	0	0	0	1333	1493	52	5	1454	5	BAZ1A	14	35240774	Missense_Mutation	SNP	T	TCGA-A8-A076-01A-21W-A019-09	10522195	35240774	72108766	39	9953										
WDR20	0	genome.wustl.edu	37	chr14	102675570	102675570	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	cacagtccaggctctccaaaCggaactctacagacagccgc	8	16	2	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	14	102675570	102675570	C	A	SNP	WDR20	ENST00000454394	human	ensembl	69_37n	1	known	silent	c.1156	p.R386	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	111	0	0	77	20	20.62	-	-	-	A	102675570	C	A	102675570	2	1	165	1	0	0	0	0	0	0	0	1	17377	527	19	3		3	WDR20	14	102675570	Silent	SNP	C	TCGA-A8-A076-01A-21W-A019-09	67434796	102675570	4673970	40	9954										
HYDIN	0	genome.wustl.edu	37	chr16	70977777	70977777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gagcacacagctcatcagccCggtctcgcctccgacactgg	10	17	3	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	16	70977777	70977777	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6604	p.G2202R	0.974	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	20	0	0	13	7	35	-	-	-	T	70977777	C	T	70977777	3	4	165	1	0	0	0	0	1	0	0	0	7521	652	23	1	8938	1	HYDIN	16	70977777	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09		70977777	19376976	41	9955										
MYO18A	0	genome.wustl.edu	37	chr17	27493334	27493334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tgggggcaggggcaccacggGgggcaggcgcaggtcgactg	22	10	0	0			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	17	27493334	27493334	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.625	p.P209S	0.171	superfamily_PDZ	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	28	0	0	5	7	58.33	-	-	-	A	27493334	G	A	27493334	3	1	165	1	0	0	0	0	1	0	0	0	10137	1232	43	4	5703	4	MYO18A	17	27493334	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		27493334	53701876	42	9956										
RPL19	0	genome.wustl.edu	37	chr17	37358625	37358625	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	atcatccgcaagcctgtgacGgtccattcccgggctcgatg	11	14	1	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	17	37358625	37358625	G	A	SNP	RPL19	ENST00000225430	human	ensembl	69_37n	1	known	silent	c.168	p.T56	0.846	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	-	no_errors	RPL19	HGNC	ENSG00000108298	46	0	0	51	12	19.05	-	-	-	A	37358625	G	A	37358625	2	1	165	1	0	0	0	0	0	0	0	1	13652	1103	39	1		1	RPL19	17	37358625	Silent	SNP	G	TCGA-A8-A076-01A-21W-A019-09	9865291	37358625	43836585	43	9957										
BRIP1	0	genome.wustl.edu	37	chr17	59763364	59763364	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	gtgaggtactgtactttaaaGaggtcacttcaagtgtagac	11	6	2	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	17	59763364	59763364	G	A	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.2738	p.S913F	0.049	NULL	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	263	0	0	196	105	34.77	-	-	-	A	59763364	G	A	59763364	3	1	165	1	0	0	0	0	1	0	0	0	1522	942	33	2	1019	2	BRIP1	17	59763364	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09	22404739	59763364	21431846	44	9958										
ZNF266	0	genome.wustl.edu	37	chr19	9525219	9525219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	acactgactaaatacagaacGttgctctccagtagaggttt	8	9	1	3			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	19	9525219	9525219	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	69_37n	-1	known	missense	c.382	p.R128C	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652	429	0	0	289	51	15	-	-	-	A	9525219	G	A	9525219	3	1	165	1	0	0	0	0	1	0	0	0	17901	1145	40	1	1271	1	ZNF266	19	9525219	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		9525219	49603764	45	9959										
LAIR1	0	genome.wustl.edu	37	chr19	54870140	54870140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	atttctattgctcattctaaCtatttctccccattgaagtt	3	10	4	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	19	54870140	54870140	C	T	SNP	LAIR1	ENST00000444687	human	ensembl	69_37n	-1	putative	missense	c.178	p.V60I	0.000	NULL	NULL	-	no_start_codon	LAIR1	HGNC	ENSG00000167613	44	0	0	25	3	10.71	-	-	-	T	54870140	C	T	54870140	3	4	165	1	0	0	0	0	1	0	0	0	8656	580	20	4		4	LAIR1	19	54870140	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09	45344921	54870140	4258843	46	9960										
ZNF135	0	genome.wustl.edu	37	chr19	58573061	58573062	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tgctggacaccttcaggcttINSctggtctctgtgggtaaggc							TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	19	58573061	58573062	-	G	INS	ZNF135	ENST00000401053	human	ensembl	69_37n	1	known	frame_shift_ins	c.183_184	p.L61fs	0.001:0.007	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293	85	0	0	43	10	18.87	-	-	-	G	58573062	-	G	58573061	7	5	165	1	0	1	1	0	0	0	0	0	17821	1770	62	0	226	0	ZNF135	19	58573061	Frame_Shift_Ins	INS	-	TCGA-A8-A076-01A-21W-A019-09	3702921	58573061	555922	47	9961										
XPNPEP3	0	genome.wustl.edu	37	chr22	41320367	41320367	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tgacaattatcttttccaggCtgctcgaaaatactgtcctc	6	11	1	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	22	41320367	41320367	C	A	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	missense	c.1238	p.A413D	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	194	0	0	113	72	38.92	-	-	-	A	41320367	C	A	41320367	3	1	165	1	0	0	0	0	1	0	0	0	17541	811	28	4	1272	4	XPNPEP3	22	41320367	Missense_Mutation	SNP	C	TCGA-A8-A076-01A-21W-A019-09		41320367	9984199	48	9962										
GABRA3	0	genome.wustl.edu	37	chrX	151376601	151376601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.994628167771038	0.696078431372549	0.861811391223156	0.635018919848641	1	1	0	tccaagaataaaccacttcaGctgttgtataggcatctaag	7	9	2	1			TCGA-A8-A076-01A-21W-A019-09	TCGA-A8-A076-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa06058-320b-4cc6-ac18-a42e59019b1c	20b982d3-ac52-4a42-8b01-05bc860a6b2b	X	151376601	151376601	G	A	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.650	p.A217V	0.988	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	157	0	0	59	142	70.65	-	-	-	A	151376601	G	A	151376601	3	1	165	1	0	0	0	0	1	0	0	0	6211	971	34	4	844	4	GABRA3	23	151376601	Missense_Mutation	SNP	G	TCGA-A8-A076-01A-21W-A019-09		151376601	3893959	49	9963										
HCN3	0	genome.wustl.edu	37	chr1	155257006	155257006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ccggcgcacagccagtgttcGggctgacacctactgccgcc	12	17	0	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	1	155257006	155257006	G	A	SNP	HCN3	ENST00000368358	human	ensembl	69_37n	1	known	missense	c.1520	p.R507Q	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630	81	0	0	44	22	33.33	-	-	-	A	155257006	G	A	155257006	3	1	166	1	0	0	0	0	1	0	0	0	7049	1116	39	1	1546	1	HCN3	1	155257006	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09		155257006	93993615	1	9964										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220440366	220440366	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	atccgaccttcaatcatttcGgggggcaggtagtccagggt	13	10	2	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	1	220440366	220440366	G	A	SNP	RAB3GAP2	ENST00000462353	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	115	0	0	132	29	17.9	-	-	-	A	220440366	G	A	220440366	1	1	166	0	1	0	0	0	0	0	0	0	13019	1131	39	1		1	RAB3GAP2	1	220440366	RNA	SNP	G	TCGA-A8-A079-01A-21W-A019-09	65183360	220440366	28810255	2	9965										
OR2T6	0	genome.wustl.edu	37	chr1	248551590	248551590	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	attctcatcacagtgcatcaGatgacatcggctgaagggag	11	9	3	3			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	1	248551590	248551590	G	A	SNP	OR2T6	ENST00000355728	human	ensembl	69_37n	1	known	silent	c.681	p.Q227	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T6	HGNC	ENSG00000198104	81	0	0	196	26	11.71	-	-	-	A	248551590	G	A	248551590	2	1	166	1	0	0	0	0	0	0	0	1	11102	933	33	2		2	OR2T6	1	248551590	Silent	SNP	G	TCGA-A8-A079-01A-21W-A019-09	28111224	248551590	699031	3	9966										
GALNT14	0	genome.wustl.edu	37	chr2	31165080	31165080	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gactcaccaaagttctccccAccccagatgtccatgtccat	5	17	2	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	2	31165080	31165080	A	C	SNP	GALNT14	ENST00000349752	human	ensembl	69_37n	-1	known	silent	c.918	p.G306	0.336	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089	174	0	0	207	58	21.89	-	-	-	C	31165080	A	C	31165080	2	2	166	1	0	0	0	0	0	0	0	1	6262	146	6	5		5	GALNT14	2	31165080	Silent	SNP	A	TCGA-A8-A079-01A-21W-A019-09		31165080	212034293	4	9967										
ERCC3	0	genome.wustl.edu	37	chr2	128051120	128051120	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gcctggaggtgtggtcgtccTtcagcggcatttgcagcctg	15	11	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	2	128051120	128051120	T	G	SNP	ERCC3	ENST00000285398	human	ensembl	69_37n	-1	known	missense	c.203	p.K68T	1.000	tigrfam_XPGB_DNA_repair	pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	-	no_errors	ERCC3	HGNC	ENSG00000163161	29	0	0	24	5	16.67	-	-	-	G	128051120	T	G	128051120	3	3	166	1	0	0	0	0	1	0	0	0	5251	1609	56	5	2201	5	ERCC3	2	128051120	Missense_Mutation	SNP	T	TCGA-A8-A079-01A-21W-A019-09	96886040	128051120	115148253	5	9968										
CLSTN2	0	genome.wustl.edu	37	chr3	140277569	140277569	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	atcgagccccggatcaccctCcggggcacagaccacttctg	10	17	2	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	3	140277569	140277569	C	G	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	silent	c.1911	p.L637	0.454	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	90	0	0	113	30	20.98	-	-	-	G	140277569	C	G	140277569	2	3	166	1	0	0	0	0	0	0	0	1	3592	842	30	2		2	CLSTN2	3	140277569	Silent	SNP	C	TCGA-A8-A079-01A-21W-A019-09		140277569	57744861	6	9969										
EIF4A2	0	genome.wustl.edu	37	chr3	186505647	186505647	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	tataaattatgatctacctaCcaatcgtgaaaactatattc	3	8	1	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	3	186505647	186505647	C	G	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.1058	p.T353S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	122	0	0	58	81	58.27	-	-	-	G	186505647	C	G	186505647	3	3	166	1	0	0	0	0	1	0	0	0	5062	507	18	4	1093	4	EIF4A2	3	186505647	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	46228078	186505647	11516783	7	9970										
GPR78	0	genome.wustl.edu	37	chr4	8588882	8588882	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ggccgacccgttcacgtactCtctgctccgccggccgttcc	10	19	2	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	4	8588882	8588882	C	T	SNP	GPR78	ENST00000382487	human	ensembl	69_37n	1	known	missense	c.884	p.S295F	0.910	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR78	HGNC	ENSG00000155269	21	0	0	6	4	40	-	-	-	T	8588882	C	T	8588882	3	4	166	1	0	0	0	0	1	0	0	0	6760	913	32	2	894	2	GPR78	4	8588882	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		8588882	182565394	8	9971										
HEATR7B2	0	genome.wustl.edu	37	chr5	41049481	41049481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gatgatactaaacaggggctCcagagcttctgtgtattctg	11	8	2	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	5	41049481	41049481	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1402	p.E468K	0.025	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	78	0	0	103	64	38.32	-	-	-	T	41049481	C	T	41049481	3	4	166	1	0	0	0	0	1	0	0	0	7086	864	30	2	3471	2	HEATR7B2	5	41049481	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		41049481	139865779	9	9972										
NDST1	0	genome.wustl.edu	37	chr5	149907411	149907411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cgcagctcaagggcttccccCtgttcctgcactcaaacctg	8	17	2	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	5	149907411	149907411	C	T	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	silent	c.559	p.L187	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	56	0	0	27	8	22.86	-	-	-	T	149907411	C	T	149907411	2	4	166	1	0	0	0	0	0	0	0	1	10327	680	24	4		4	NDST1	5	149907411	Silent	SNP	C	TCGA-A8-A079-01A-21W-A019-09	108857930	149907411	31007849	10	9973										
DOM3Z	0	genome.wustl.edu	37	chr6	31937674	31937675	+	Frame_Shift_Ins	INS	-	-	G													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	tatttgggagagggagtcttINSggggggtgatgggaggtcct							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	6	31937674	31937675	-	G	INS	DOM3Z	ENST00000337523	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1171_1170	p.K390fs	0.980:0.835	NULL	pfam_RAI1	-	no_errors	DOM3Z	HGNC	ENSG00000204348	40	0	0	17	3	15	-	-	-	G	31937675	-	G	31937674	7	5	166	1	0	1	1	0	0	0	0	0	4740	1821	63	0	23	0	DOM3Z	6	31937674	Frame_Shift_Ins	INS	-	TCGA-A8-A079-01A-21W-A019-09		31937674	139177393	11	9974										
RPS10	0	genome.wustl.edu	37	chr6	34389559	34389559	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	tcagcttcccctcttgtgagTctcgcaggtcgctcaccctc	8	17	4	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	6	34389559	34389559	T	A	SNP	RPS10	ENST00000326199	human	ensembl	69_37n	-1	known	missense	c.348	p.R116S	0.983	NULL	pfam_S10_plectin_N	-	no_errors	RPS10	HGNC	ENSG00000124614	161	0	0	95	51	34.93	-	-	-	A	34389559	T	A	34389559	3	1	166	1	0	0	0	0	1	0	0	0	13706	1664	58	5	161	5	RPS10	6	34389559	Missense_Mutation	SNP	T	TCGA-A8-A079-01A-21W-A019-09	2451885	34389559	136725508	12	9975										
EYS	0	genome.wustl.edu	37	chr6	66094305	66094305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	tcttccaattatattgaaacAccattcttcattcagacagt	3	10	4	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	6	66094305	66094305	A	C	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.1273	p.C425G	1.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	98	0	0	101	18	15.13	-	-	-	C	66094305	A	C	66094305	3	2	166	1	0	0	0	0	1	0	0	0	5369	159	6	5	8267	5	EYS	6	66094305	Missense_Mutation	SNP	A	TCGA-A8-A079-01A-21W-A019-09	31704746	66094305	105020762	13	9976										
TRIL	0	genome.wustl.edu	37	chr7	28996972	28996972	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cgagaggatgagggaggagaGggagcgcagcggtgcgaagg	23	5	0	3			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	7	28996972	28996972	G	A	SNP	TRIL	ENST00000322982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734	9	0	0	3	5	62.5	-	-	-	A	28996972	G	A	28996972	1	1	166	0	1	0	0	0	0	0	0	0	16581	1000	35	4		4	TRIL	7	28996972	RNA	SNP	G	TCGA-A8-A079-01A-21W-A019-09		28996972	130141691	14	9977										
HECW1	0	genome.wustl.edu	37	chr7	43484512	43484512	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	agggcggcagcgcggcagagGaggaggacggcgcggaggag	24	8	0	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	7	43484512	43484512	G	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	nonsense	c.1741	p.E581*	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	20	0	0	4	5	50	-	-	-	T	43484512	G	T	43484512	4	4	166	1	0	0	0	0	0	1	0	0	7093	1175	41	2	1775	2	HECW1	7	43484512	Nonsense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	14487540	43484512	115654151	15	9978										
KCNQ3	0	genome.wustl.edu	37	chr8	133141963	133141963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ttccagaactgggtccccctCggggcaggttcacagggtca	13	13	2	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	8	133141963	133141963	C	G	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.2165	p.R722P	0.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	83	0	0	257	34	11.6	-	-	-	G	133141963	C	G	133141963	3	3	166	1	0	0	0	0	1	0	0	0	8138	884	31	3	457	3	KCNQ3	8	133141963	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		133141963	13222059	16	9979										
KANK1	0	genome.wustl.edu	37	chr9	712824	712824	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gtgcaccagttcaccaacacCgagacggccaccctcataga	8	16	2	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	9	712824	712824	C	G	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	silent	c.2058	p.T686	0.003	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	59	0	0	45	11	19.64	-	-	-	G	712824	C	G	712824	2	3	166	1	0	0	0	0	0	0	0	1	8030	639	23	3		3	KANK1	9	712824	Silent	SNP	C	TCGA-A8-A079-01A-21W-A019-09		712824	140500607	17	9980										
TLN1	0	genome.wustl.edu	37	chr9	35717228	35717228	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	taacggccagcaggcccagcCcctgtggcatgggctttcac	12	15	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	9	35717228	35717228	C	A	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	silent	c.2373	p.G791	0.109	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	112	0	0	71	11	13.41	-	-	-	A	35717228	C	A	35717228	2	1	166	1	0	0	0	0	0	0	0	1	16042	610	22	4		4	TLN1	9	35717228	Silent	SNP	C	TCGA-A8-A079-01A-21W-A019-09	35004404	35717228	105496203	18	9981										
GATA3	0	genome.wustl.edu	37	chr10	8115809	8115810	+	Frame_Shift_Del	DEL	CC	CC	-													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	catgactcactggaggacttCcccaagaacagctcgtttaa							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	10	8115809	8115810	CC	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1158_1159	p.P387fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	94	0	0	127	73	36.32	-	-	-	-	8115810	CC	-	8115809	7	5	166	1	0	1	0	1	0	0	0	0	6305	854	30	0	1176	0	GATA3	10	8115809	Frame_Shift_Del	DEL	CC	TCGA-A8-A079-01A-21W-A019-09		8115809	127418938	19	9982										
BEST1	0	genome.wustl.edu	37	chr11	61727447	61727448	+	Frame_Shift_Ins	INS	-	-	C													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ggaataagcccgagccacagINScccccctacacagctgcttc							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	11	61727447	61727448	-	C	INS	BEST1	ENST00000449131	human	ensembl	69_37n	1	known	frame_shift_ins	c.852_853	p.Y286fs	0.598:0.999	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	13	0	0	9	2	18.18	-	-	-	C	61727448	-	C	61727447	7	5	166	1	0	1	1	0	0	0	0	0	1408	962	34	0	1062	0	BEST1	11	61727447	Frame_Shift_Ins	INS	-	TCGA-A8-A079-01A-21W-A019-09		61727447	73279069	20	9983										
VWF	0	genome.wustl.edu	37	chr12	6120800	6120800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cacaggggcaggtccagcggCagccacaggtctcttccact	12	15	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	6120800	6120800	C	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.5825	p.C1942Y	1.000	pirsf_VWF,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	36	0	0	32	6	15.79	-	-	-	T	6120800	C	T	6120800	3	4	166	1	0	0	0	0	1	0	0	0	17343	710	25	4	2692	4	VWF	12	6120800	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		6120800	127731095	21	9984										
CNTN1	0	genome.wustl.edu	37	chr12	41421662	41421662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	attactacttttcacagctcCtagccagcctccaaggatca	5	14	2	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	41421662	41421662	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2714	p.P905L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	92	0	0	160	26	13.98	-	-	-	T	41421662	C	T	41421662	3	4	166	1	0	0	0	0	1	0	0	0	3670	681	24	4	2796	4	CNTN1	12	41421662	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	35300862	41421662	92430233	22	9985										
ANKS1B	0	genome.wustl.edu	37	chr12	100206055	100206055	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gttgtctgctacatttgttgAtgcctcatactgaagtagtt	9	7	2	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	100206055	100206055	A	C	SNP	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	missense	c.250	p.S84A	0.932	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	231	0	0	326	81	19.85	-	-	-	C	100206055	A	C	100206055	3	2	166	1	0	0	0	0	1	0	0	0	688	333	12	5	3880	5	ANKS1B	12	100206055	Missense_Mutation	SNP	A	TCGA-A8-A079-01A-21W-A019-09	58784393	100206055	33645840	23	9986										
MYO1H	0	genome.wustl.edu	37	chr12	109843800	109843800	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	agaagacgaccaaggctgtgCcactatcccagacacccatg	9	14	0	3			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	109843800	109843800	C	A	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.875	p.A292D	0.988	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	76	0	0	162	29	15.18	-	-	-	A	109843800	C	A	109843800	3	1	166	1	0	0	0	0	1	0	0	0	10147	739	26	4	901	4	MYO1H	12	109843800	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	9637745	109843800	24008095	24	9987										
CLIP1	0	genome.wustl.edu	37	chr12	122848621	122848621	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ggcaaagtcggtctccccaaGaaaccggactacaccagcct	9	15	1	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	122848621	122848621	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.691	p.L231F	0.999	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	69	0	0	78	100	55.87	-	-	-	A	122848621	G	A	122848621	3	1	166	1	0	0	0	0	1	0	0	0	3562	942	33	2	3680	2	CLIP1	12	122848621	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	13004821	122848621	11003274	25	9988										
RIMBP2	0	genome.wustl.edu	37	chr12	130926628	130926628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ggtagccaggagagctgggcGgagatctgcgtgatgttgtc	18	7	1	3			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	130926628	130926628	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.1218	p.S406	0.487	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	42	0	0	11	16	59.26	-	-	-	A	130926628	G	A	130926628	2	1	166	1	0	0	0	0	0	0	0	1	13447	1103	39	1		1	RIMBP2	12	130926628	Silent	SNP	G	TCGA-A8-A079-01A-21W-A019-09	8078007	130926628	2925267	26	9989										
RIMBP2	0	genome.wustl.edu	37	chr12	130927141	130927141	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gtgcttgccaaccgcgactcGttgtcctgcacaaagtccac	9	15	0	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	12	130927141	130927141	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.705	p.N235	0.896	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	45	0	0	21	17	44.74	-	-	-	A	130927141	G	A	130927141	2	1	166	1	0	0	0	0	0	0	0	1	13447	1136	40	1		1	RIMBP2	12	130927141	Silent	SNP	G	TCGA-A8-A079-01A-21W-A019-09	513	130927141	2924754	27	9990										
CARS2	0	genome.wustl.edu	37	chr13	111296764	111296765	+	Frame_Shift_Ins	INS	-	-	A													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	agagaaattccaacagtttcINSaaaaaactgttcaaagtaag							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	13	111296764	111296765	-	A	INS	CARS2	ENST00000257347	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1384_1383	p.E461fs	0.674:0.630	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS2	HGNC	ENSG00000134905	58	0	0	10	2	16.67	-	-	-	A	111296765	-	A	111296764	7	5	166	1	0	1	1	0	0	0	0	0	2683	835	29	0	322	0	CARS2	13	111296764	Frame_Shift_Ins	INS	-	TCGA-A8-A079-01A-21W-A019-09		111296764	3873114	28	9991										
SLC12A6	0	genome.wustl.edu	37	chr15	34533532	34533532	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ataccatcaccccattctttCtcagctctgtgagaaaaaga	5	12	4	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	15	34533532	34533532	C	G	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.2142	p.E714D	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	66	0	0	128	16	11.11	-	-	-	G	34533532	C	G	34533532	3	3	166	1	0	0	0	0	1	0	0	0	14476	912	32	2	1319	2	SLC12A6	15	34533532	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		34533532	67997860	29	9992										
APH1B	0	genome.wustl.edu	37	chr15	63594553	63594553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ctctctttcagctttcatgaCgctggtcattatcttgctgc	7	12	5	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	15	63594553	63594553	C	T	SNP	APH1B	ENST00000261879	human	ensembl	69_37n	1	known	missense	c.488	p.T163M	1.000	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1B	HGNC	ENSG00000138613	227	0	0	448	109	19.53	-	-	-	T	63594553	C	T	63594553	3	4	166	1	0	0	0	0	1	0	0	0	773	536	19	1	506	1	APH1B	15	63594553	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	29061021	63594553	38936839	30	9993										
TP53	0	genome.wustl.edu	37	chr17	7578205	7578205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gctcatagggcaccaccacaCtatgtcgaaaagtgtttctg	9	11	2	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	17	7578205	7578205	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.644	p.S215I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0	20	84	80.77	-	-	-	A	7578205	C	A	7578205	3	1	166	1	0	0	0	0	1	0	0	0	16477	565	20	4	650	4	TP53	17	7578205	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		7578205	73617005	31	9994										
LGALS9B	0	genome.wustl.edu	37	chr17	20356373	20356373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	tctgcaccgtgtggatgactGtctgggtctggaagaaagaa	14	7	3	3			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	17	20356373	20356373	G	A	SNP	LGALS9B	ENST00000423676	human	ensembl	69_37n	-1	known	missense	c.584	p.T195I	0.000	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS9B	HGNC	ENSG00000170298	50	0	0	9	30	76.92	-	-	-	A	20356373	G	A	20356373	3	1	166	1	0	0	0	0	1	0	0	0	8804	1377	48	4	503	4	LGALS9B	17	20356373	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	12778168	20356373	60838837	32	9995										
GJC1	0	genome.wustl.edu	37	chr17	42883150	42883150	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	aatgtggaatggttgtgaatCtcctctagcaggcgagtcag	13	7	3	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	17	42883150	42883150	C	G	SNP	GJC1	ENST00000330514	human	ensembl	69_37n	-1	known	missense	c.36	p.E12D	1.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin45	-	no_errors	GJC1	HGNC	ENSG00000182963	102	1	0.97	65	68	51.13	-	-	-	G	42883150	C	G	42883150	3	3	166	1	0	0	0	0	1	0	0	0	6466	912	32	2	1158	2	GJC1	17	42883150	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	22526777	42883150	38312060	33	9996										
UBE2O	0	genome.wustl.edu	37	chr17	74387082	74387082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gcagggcagcccggaactgcGtcaggacaccccggatgctc	14	15	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	17	74387082	74387082	G	A	SNP	UBE2O	ENST00000319380	human	ensembl	69_37n	-1	known	missense	c.3821	p.T1274M	0.379	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	41	0	0	26	6	18.75	-	-	-	A	74387082	G	A	74387082	3	1	166	1	0	0	0	0	1	0	0	0	16965	1145	40	1	61	1	UBE2O	17	74387082	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	31503932	74387082	6808128	34	9997										
DNAH17	0	genome.wustl.edu	37	chr17	76455994	76455994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ttgtccttggggatcttgccCccaggtgcggtcagaatcat	12	11	3	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	17	76455994	76455994	C	T	SNP	DNAH17	ENST00000591369	human	ensembl	69_37n	-1	known	missense	c.1127	p.G376E	0.153	NULL	pfam_Dynein_heavy,superfamily_HR1_rho-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH17	HGNC	ENSG00000187775	22	0	0	11	11	50	-	-	-	T	76455994	C	T	76455994	3	4	166	1	0	0	0	0	1	0	0	0	4637	610	22	4	3951	4	DNAH17	17	76455994	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	2068912	76455994	4739216	35	9998										
CEP192	0	genome.wustl.edu	37	chr18	13049592	13049592	+	Missense_Mutation	SNP	G	G	T													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cgagataacagagaaaatcaGaggcaaaatgagtgtgtcag							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	18	13049592	13049592	G	T	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.2802	p.Q934H	0.021	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	249	0	0	191	216	53.07	-	-	-	T	13049592	G	T	13049592	3	4	166	1	0	0	0	0	1	0	0	0	3280	933	33	2	2860	2	CEP192	18	13049592	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09		13049592	65027656	36	9999	81	2								
CEP192	0	genome.wustl.edu	37	chr18	13049593	13049593	+	Missense_Mutation	SNP	A	A	T													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gagataacagagaaaatcagAggcaaaatgagtgtgtcagt							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	18	13049593	13049593	A	T	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.2803	p.R935W	0.024	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	248	0	0	190	218	53.43	-	-	-	T	13049593	A	T	13049593	3	4	166	1	0	0	0	0	1	0	0	0	3280	295	11	5	2861	5	CEP192	18	13049593	Missense_Mutation	SNP	A	TCGA-A8-A079-01A-21W-A019-09	1	13049593	65027655	37	10000	81	2								
HAUS1	0	genome.wustl.edu	37	chr18	43685277	43685277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gcaacagggtccgggacaggGatgtctacctggtaatagag	15	8	1	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	18	43685277	43685277	G	T	SNP	HAUS1	ENST00000282058	human	ensembl	69_37n	1	known	missense	c.148	p.D50Y	1.000	NULL	NULL	-	no_errors	HAUS1	HGNC	ENSG00000152240	79	0	0	39	45	53.57	-	-	-	T	43685277	G	T	43685277	3	4	166	1	0	0	0	0	1	0	0	0	7016	1174	41	2	154	2	HAUS1	18	43685277	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	30635684	43685277	34391971	38	10001										
CACNA1A	0	genome.wustl.edu	37	chr19	13470592	13470592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cttctgtcccacatggagccGgagactcaccctgaatgtca	9	14	3	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	19	13470592	13470592	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.806	p.P269L	0.971	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	18	0	0	28	8	22.22	-	-	-	A	13470592	G	A	13470592	3	1	166	1	0	0	0	0	1	0	0	0	2563	1116	39	1	6996	1	CACNA1A	19	13470592	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09		13470592	45658391	39	10002										
SUPT5H	0	genome.wustl.edu	37	chr19	39962333	39962333	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	gaacgggggcatgtttgtctGcaagacccgccacctggtgc	14	12	1	1			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	19	39962333	39962333	G	T	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.1913	p.C638F	1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	75	0	0	36	6	14.29	-	-	-	T	39962333	G	T	39962333	3	4	166	1	0	0	0	0	1	0	0	0	15490	1319	46	4	1987	4	SUPT5H	19	39962333	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	26491741	39962333	19166650	40	10003										
NCR1	0	genome.wustl.edu	37	chr19	55418015	55418015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ttgaaggaagcctttttgccGtggacagaccaaaaccccct	9	12	0	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	19	55418015	55418015	G	A	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	1	known	missense	c.205	p.V69M	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	154	0	0	118	24	16.9	-	-	-	A	55418015	G	A	55418015	3	1	166	1	0	0	0	0	1	0	0	0	10309	1145	40	1	215	1	NCR1	19	55418015	Missense_Mutation	SNP	G	TCGA-A8-A079-01A-21W-A019-09	15455682	55418015	3710968	41	10004										
CPXM1	0	genome.wustl.edu	37	chr20	2778613	2778613	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	agccacagtgggaccactcaCtgcgtccatcccactgctgt	9	16	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	20	2778613	2778613	C	T	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	splice_site	c.681+1	e5+1	0.998	-	-	-	no_errors	CPXM1	HGNC	ENSG00000088882	110	0	0	36	13	26.53	-	-	-	T	2778613	C	T	2778613	5	4	166	1	0	0	0	0	0	0	1	0	3867	579	20	4	1562	4	CPXM1	20	2778613	Splice_Site	SNP	C	TCGA-A8-A079-01A-21W-A019-09		2778613	60246907	42	10005										
CHD6	0	genome.wustl.edu	37	chr20	40033794	40033794	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	cccccaacaccaaacatctgGggcacagcagccatgcctgg	9	17	1	0			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	20	40033794	40033794	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.7587	p.P2529	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	98	0	0	113	60	34.68	-	-	-	A	40033794	G	A	40033794	2	1	166	1	0	0	0	0	0	0	0	1	3358	1219	43	4		4	CHD6	20	40033794	Silent	SNP	G	TCGA-A8-A079-01A-21W-A019-09	37255181	40033794	22991726	43	10006										
FAM109B	0	genome.wustl.edu	37	chr22	42473376	42473377	+	Frame_Shift_Ins	INS	-	-	G													0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	catgggcttcctgcgcacctINSgggggggcccagggacccca							TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	22	42473376	42473377	-	G	INS	FAM109B	ENST00000321753	human	ensembl	69_37n	1	known	frame_shift_ins	c.79_80	p.P31fs	0.979:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109B	HGNC	ENSG00000177096	31	0	0	23	3	11.54	-	-	-	G	42473377	-	G	42473376	7	5	166	1	0	1	1	0	0	0	0	0	5435	1580	55	0	81	0	FAM109B	22	42473376	Frame_Shift_Ins	INS	-	TCGA-A8-A079-01A-21W-A019-09		42473376	8831190	44	10007										
GTSE1	0	genome.wustl.edu	37	chr22	46704569	46704569	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	ccccacgtctcttaaaagggAgacatactacctgtcagaca	7	13	2	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	22	46704569	46704569	A	T	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.491	p.E164V	1.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	109	0	0	90	12	11.76	-	-	-	T	46704569	A	T	46704569	3	4	166	1	0	0	0	0	1	0	0	0	6936	304	11	5	501	5	GTSE1	22	46704569	Missense_Mutation	SNP	A	TCGA-A8-A079-01A-21W-A019-09	4231193	46704569	4599997	45	10008										
RP2	0	genome.wustl.edu	37	chrX	46713075	46713075	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	attgatgactgtactaactgCataatttttctgggacccgt	8	8	1	2			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	X	46713075	46713075	C	A	SNP	RP2	ENST00000218340	human	ensembl	69_37n	1	known	nonsense	c.267	p.C89*	0.996	pfam_Tubulin-bd_cofactor_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218	242	0	0	376	68	15.28	-	-	-	A	46713075	C	A	46713075	4	1	166	1	0	0	0	0	0	1	0	0	13620	718	25	4	273	4	RP2	23	46713075	Nonsense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09		46713075	108557485	46	10009										
GPR101	0	genome.wustl.edu	37	chrX	136113230	136113230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108695652173913	5	0.593406279394177	1.40895061728395	2.53611111111111	1.08690476190476	1	1	0	catgacaatcagtggaatgaCgatgaaggacaccacgctga	11	9	1	4			TCGA-A8-A079-01A-21W-A019-09	TCGA-A8-A079-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06221ce8-ab65-4694-945b-059b9c15ede4	216ff15e-f1a4-402a-a5bb-a9b4dccd6ada	X	136113230	136113230	C	T	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	missense	c.604	p.V202I	0.260	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	153	0	0	87	23	20.91	-	-	-	T	136113230	C	T	136113230	3	4	166	1	0	0	0	0	1	0	0	0	6672	536	19	1	925	1	GPR101	23	136113230	Missense_Mutation	SNP	C	TCGA-A8-A079-01A-21W-A019-09	89400155	136113230	19157330	47	10010										
THRAP3	0	genome.wustl.edu	37	chr1	36766611	36766611	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aggagagcaccacgggctttGacaaatcaagactggggacc	13	10	1	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	36766611	36766611	G	A	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.2428	p.D810N	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	85	0	0	34	30	46.88	-	-	-	A	36766611	G	A	36766611	3	1	167	1	0	0	0	0	1	0	0	0	15969	1290	45	2	2458	2	THRAP3	1	36766611	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09		36766611	212484010	1	10011										
ZSWIM5	0	genome.wustl.edu	37	chr1	45516765	45516765	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	cctgggctgtgaatggcactCtggggaagtgcattggtgat	16	7	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	45516765	45516765	C	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	silent	c.1413	p.Q471	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	149	0	0	107	83	43.68	-	-	-	T	45516765	C	T	45516765	2	4	167	1	0	0	0	0	0	0	0	1	18335	912	32	2		2	ZSWIM5	1	45516765	Silent	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	8750154	45516765	203733856	2	10012										
THBS3	0	genome.wustl.edu	37	chr1	155171777	155171777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggtgcagatggagtttgggtCacagccaccattgttgccat	13	9	1	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	155171777	155171777	C	G	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.1147	p.D383H	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	77	0	0	42	9	17.65	-	-	-	G	155171777	C	G	155171777	3	3	167	1	0	0	0	0	1	0	0	0	15950	826	29	2	1779	2	THBS3	1	155171777	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	109655012	155171777	94078844	3	10013										
RHBG	0	genome.wustl.edu	37	chr1	156347927	156347928	+	Frame_Shift_Ins	INS	-	-	G													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tttgtgctccttcatctcctINSgggggtgagagtctggggag							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	156347927	156347928	-	G	INS	RHBG	ENST00000368246	human	ensembl	69_37n	1	known	frame_shift_ins	c.521_522	p.V176fs	1.000:0.995	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	24	0	0	12	2	14.29	-	-	-	G	156347928	-	G	156347927	7	5	167	1	0	1	1	0	0	0	0	0	13408	1580	55	0	531	0	RHBG	1	156347927	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09	1176150	156347927	92902694	4	10014										
ZNF281	0	genome.wustl.edu	37	chr1	200376828	200376828	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aagcctgttggaggtatttgGagtattcttgcaacatactt	10	6	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	200376828	200376828	G	C	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	missense	c.2006	p.S669C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	120	0	0	69	62	47.33	-	-	-	C	200376828	G	C	200376828	3	2	167	1	0	0	0	0	1	0	0	0	17914	1174	41	2	685	2	ZNF281	1	200376828	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	44028901	200376828	48873793	5	10015										
SCCPDH	0	genome.wustl.edu	37	chr1	246930542	246930542	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gctttttccaaaacaaagttGattgacagactcaacaaaca	5	9	1	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	246930542	246930542	G	T	SNP	SCCPDH	ENST00000366510	human	ensembl	69_37n	1	known	missense	c.1230	p.L410F	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653	51	0	0	75	16	17.58	-	-	-	T	246930542	G	T	246930542	3	4	167	1	0	0	0	0	1	0	0	0	13972	1281	45	2	1276	2	SCCPDH	1	246930542	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	46553714	246930542	2320079	6	10016										
OR2T34	0	genome.wustl.edu	37	chr1	248737930	248737930	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aggagggcattcccagtgagGgccatcaagaaaagaaggaa	14	7	1	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	1	248737930	248737930	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	silent	c.129	p.A43	0.020	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	385	0	0	470	90	16.07	-	-	-	A	248737930	G	A	248737930	2	1	167	1	0	0	0	0	0	0	0	1	11098	1219	43	4		4	OR2T34	1	248737930	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	1807388	248737930	512691	7	10017										
FANCL	0	genome.wustl.edu	37	chr2	58456952	58456952	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ttttaaaaaggacttacctgTtgtactattcgatggtatcc	7	7	0	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	2	58456952	58456952	T	A	SNP	FANCL	ENST00000233741	human	ensembl	69_37n	-1	known	missense	c.213	p.Q71H	0.883	pfam_FancL_WD-rpt_cont_dom	pfam_FancL_WD-rpt_cont_dom	-	no_errors	FANCL	HGNC	ENSG00000115392	120	0	0	109	35	24.31	-	-	-	A	58456952	T	A	58456952	3	1	167	1	0	0	0	0	1	0	0	0	5716	1722	60	5	977	5	FANCL	2	58456952	Missense_Mutation	SNP	T	TCGA-A8-A07B-01A-11W-A019-09		58456952	184742421	8	10018										
CCDC138	0	genome.wustl.edu	37	chr2	109489964	109489964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tttattttttcgtacttgctCtgtgctgcttcgagccccta	7	11	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	2	109489964	109489964	C	G	SNP	CCDC138	ENST00000295124	human	ensembl	69_37n	1	known	missense	c.1751	p.S584C	0.982	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	170	0	0	148	64	30.19	-	-	-	G	109489964	C	G	109489964	3	3	167	1	0	0	0	0	1	0	0	0	2797	913	32	2	1805	2	CCDC138	2	109489964	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	51033012	109489964	133709409	9	10019										
GLI2	0	genome.wustl.edu	37	chr2	121726426	121726426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aactcgctagtggcctacatCaacaactcccgaagcagctc	7	15	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	2	121726426	121726426	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.780	p.I260M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	24	0	0	15	8	34.78	-	-	-	G	121726426	C	G	121726426	3	3	167	1	0	0	0	0	1	0	0	0	6490	816	29	2	798	2	GLI2	2	121726426	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	12236462	121726426	121472947	10	10020										
CCDC74A	0	genome.wustl.edu	37	chr2	132289293	132289293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aagattcaaaagctgacgtcTcccagaaggcggacctggaa	11	10	2	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	2	132289293	132289293	T	C	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	1	known	missense	c.601	p.S201P	0.019	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	22	0	0	6	3	33.33	-	-	-	C	132289293	T	C	132289293	3	2	167	1	0	0	0	0	1	0	0	0	2874	1551	54	5	615	5	CCDC74A	2	132289293	Missense_Mutation	SNP	T	TCGA-A8-A07B-01A-11W-A019-09	10562867	132289293	110910080	11	10021										
ALS2	0	genome.wustl.edu	37	chr2	202606414	202606414	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tgctctgtataactatccaaGaagagacttgaatgcttcag	8	8	2	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	2	202606414	202606414	G	C	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	missense	c.2334	p.F778L	1.000	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	77	0	0	40	36	47.37	-	-	-	C	202606414	G	C	202606414	3	2	167	1	0	0	0	0	1	0	0	0	550	933	33	2	2735	2	ALS2	2	202606414	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	70317121	202606414	40592959	12	10022										
EPHA3	0	genome.wustl.edu	37	chr3	89448571	89448571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	cgtattccaaatccgagcccGaacagccgctggatatggga	11	12	0	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	3	89448571	89448571	G	A	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.1535	p.R512Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	143	0	0	81	52	39.1	-	-	-	A	89448571	G	A	89448571	3	1	167	1	0	0	0	0	1	0	0	0	5205	1058	37	1	1561	1	EPHA3	3	89448571	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09		89448571	108573859	13	10023										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	186	1	0.53	162	95	36.96	-	-	-	G	178952085	A	G	178952085	3	3	167	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	89503514	178952085	19070345	14	10024										
LEPREL1	0	genome.wustl.edu	37	chr3	189705453	189705453	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ctccagggctttcacatactCaccaactgaaagacaaagga	7	12	2	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	3	189705453	189705453	C	T	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	missense	c.961	p.E321K	0.935	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	122	0	0	126	70	35.71	-	-	-	T	189705453	C	T	189705453	3	4	167	1	0	0	0	0	1	0	0	0	8784	835	29	2	1209	2	LEPREL1	3	189705453	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	10753368	189705453	8316977	15	10025										
MUC4	0	genome.wustl.edu	37	chr3	195492266	195492266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gccactgcaggcactcgagaCggtagttgggcctttcttcc	12	13	1	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	3	195492266	195492266	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.13673	p.R4558H	0.997	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	15	0	0	12	9	42.86	-	-	-	T	195492266	C	T	195492266	3	4	167	1	0	0	0	0	1	0	0	0	10050	536	19	1	2633	1	MUC4	3	195492266	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	5786813	195492266	2530164	16	10026										
OTOP1	0	genome.wustl.edu	37	chr4	4199564	4199564	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggagcgcccaatatgaatcaGgtataccaccaccacagcaa	8	13	1	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	4	4199564	4199564	G	A	SNP	OTOP1	ENST00000296358	human	ensembl	69_37n	-1	known	silent	c.997	p.L333	0.841	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982	45	0	0	49	21	30	-	-	-	A	4199564	G	A	4199564	2	1	167	1	0	0	0	0	0	0	0	1	11378	991	35	4		4	OTOP1	4	4199564	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09		4199564	186954712	17	10027										
CCNA2	0	genome.wustl.edu	37	chr4	122740585	122740585	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gatgcagaaagtattgggtaAgaaactgatttactgttgga	12	3	0	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	4	122740585	122740585	A	G	SNP	CCNA2	ENST00000274026	human	ensembl	69_37n	-1	known	missense	c.944	p.L315P	1.000	pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA2	HGNC	ENSG00000145386	134	0	0	59	21	26.25	-	-	-	G	122740585	A	G	122740585	3	3	167	1	0	0	0	0	1	0	0	0	2939	72	3	5	370	5	CCNA2	4	122740585	Missense_Mutation	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	118541021	122740585	68413691	18	10028										
PRR3	0	genome.wustl.edu	37	chr6	30529872	30529872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tcttatcaagaatacctgccCgcccaaggatgacccccagg	8	15	2	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	6	30529872	30529872	C	T	SNP	PRR3	ENST00000376560	human	ensembl	69_37n	1	known	missense	c.431	p.P144L	0.950	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	PRR3	HGNC	ENSG00000204576	132	0	0	89	47	34.56	-	-	-	T	30529872	C	T	30529872	3	4	167	1	0	0	0	0	1	0	0	0	12678	652	23	1	441	1	PRR3	6	30529872	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		30529872	140585195	19	10029										
GIGYF1	0	genome.wustl.edu	37	chr7	100280053	100280053	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	cagcttcagcagcttctcttCttcctccgtctttttgcgaa	6	14	4	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	7	100280053	100280053	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.2653	p.E885K	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	18	0	0	8	5	38.46	-	-	-	T	100280053	C	T	100280053	3	4	167	1	0	0	0	0	1	0	0	0	6429	922	32	2	470	2	GIGYF1	7	100280053	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		100280053	58858610	20	10030										
SLC13A1	0	genome.wustl.edu	37	chr7	122757567	122757567	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ccatatgaaaagacaatagcAttgggtggatttgctactgg	11	6	0	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	7	122757567	122757567	A	T	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.1608	p.N536K	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	173	0	0	178	36	16.82	-	-	-	T	122757567	A	T	122757567	3	4	167	1	0	0	0	0	1	0	0	0	14480	214	8	5	187	5	SLC13A1	7	122757567	Missense_Mutation	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	22477514	122757567	36381096	21	10031										
TRIM24	0	genome.wustl.edu	37	chr7	138203954	138203954	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aggcagttggtgtcaccagcCagcgaccagtgttttgtcct	12	11	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	7	138203954	138203954	C	T	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	nonsense	c.652	p.Q218*	1.000	smart_Znf_B-box,pfscan_Znf_B-box	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	100	0	0	77	48	38.4	-	-	-	T	138203954	C	T	138203954	4	4	167	1	0	0	0	0	0	1	0	0	16594	595	21	4	666	4	TRIM24	7	138203954	Nonsense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	15446387	138203954	20934709	22	10032										
BLK	0	genome.wustl.edu	37	chr8	11405607	11405608	+	Frame_Shift_Ins	INS	-	-	G													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	cgggacctgcagatgctgaaINSgggggagaagctacaggtcc							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	8	11405607	11405608	-	G	INS	BLK	ENST00000259089	human	ensembl	69_37n	1	known	frame_shift_ins	c.242_243	p.E83fs	1.000:1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	31	0	0	18	2	10	-	-	-	G	11405608	-	G	11405607	7	5	167	1	0	1	1	0	0	0	0	0	1449	72	3	0	252	0	BLK	8	11405607	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09		11405607	134958415	23	10033										
STK3	0	genome.wustl.edu	37	chr8	99591915	99591915	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	attttcttcttcctcttccaAttctcgttgctgttcctcat	3	13	5	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	8	99591915	99591915	A	G	SNP	STK3	ENST00000419617	human	ensembl	69_37n	-1	known	silent	c.925	p.L309	0.982	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK3	HGNC	ENSG00000104375	318	0	0	1121	207	15.58	-	-	-	G	99591915	A	G	99591915	2	3	167	1	0	0	0	0	0	0	0	1	15386	98	4	5		5	STK3	8	99591915	Silent	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	88186308	99591915	46772107	24	10034										
ZHX1	0	genome.wustl.edu	37	chr8	124266785	124266785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ctcttttgtcttttttgcccGaatgccaaatgaatcagggt	8	9	3	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	8	124266785	124266785	G	A	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	missense	c.1402	p.R468W	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	300	0	0	1024	124	10.79	-	-	-	A	124266785	G	A	124266785	3	1	167	1	0	0	0	0	1	0	0	0	17771	1057	37	1	1223	1	ZHX1	8	124266785	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	24674870	124266785	22097237	25	10035										
IL11RA	0	genome.wustl.edu	37	chr9	34655616	34655616	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ccacaggggtccagtatgggCagccaggcaggtccgtgaag	16	11	0	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	9	34655616	34655616	C	T	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	nonsense	c.115	p.Q39*	1.000	smart_Ig_sub,pfscan_Ig-like	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	41	0	0	21	16	43.24	-	-	-	T	34655616	C	T	34655616	4	4	167	1	0	0	0	0	0	1	0	0	7677	711	25	4	121	4	IL11RA	9	34655616	Nonsense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		34655616	106557815	26	10036										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714836	138714836	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggtgaggccctggggaactcCgggtcagcctgctggggaac	18	11	1	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	9	138714836	138714836	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.1704	p.P568	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	105	0	0	26	27	50.94	-	-	-	A	138714836	C	A	138714836	2	1	167	1	0	0	0	0	0	0	0	1	2636	639	23	3		3	CAMSAP1	9	138714836	Silent	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	104059220	138714836	2498595	27	10037										
QSER1	0	genome.wustl.edu	37	chr11	32996910	32996911	+	Frame_Shift_Ins	INS	-	-	A													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	taatttcttctcatttacttINSaaaaaaaatgtttttcagaa							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	11	32996910	32996911	-	A	INS	QSER1	ENST00000524678	human	ensembl	69_37n	1	putative	frame_shift_ins	c.2150_2151	p.M720fs	0.003:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QSER1	HGNC	ENSG00000060749	52	0	0	88	19	17.76	-	-	-	A	32996911	-	A	32996910	7	5	167	1	0	1	1	0	0	0	0	0	12965	1769	61	0		0	QSER1	11	32996910	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09		32996910	102009606	28	10038										
CTTN	0	genome.wustl.edu	37	chr11	70256029	70256029	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aaaagcttcccatggctatgGagggaaatttggtgtggaac	13	6	0	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	11	70256029	70256029	G	C	SNP	CTTN	ENST00000301843	human	ensembl	69_37n	1	known	missense	c.254	p.G85A	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	96	0	0	61	178	74.48	-	-	-	C	70256029	G	C	70256029	3	2	167	1	0	0	0	0	1	0	0	0	4076	1174	41	2	264	2	CTTN	11	70256029	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	37259119	70256029	64750487	29	10039										
SIAE	0	genome.wustl.edu	37	chr11	124518025	124518025	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	atggatcatggcattccagaGaacagagtgcttactgggac	12	8	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	11	124518025	124518025	G	C	SNP	SIAE	ENST00000263593	human	ensembl	69_37n	-1	known	missense	c.769	p.L257V	1.000	pfam_DUF303_acetylest,superfamily_Esterase_SGNH_hydro-type	pfam_DUF303_acetylest,superfamily_Esterase_SGNH_hydro-type	-	no_errors	SIAE	HGNC	ENSG00000110013	151	0	0	49	90	64.75	-	-	-	C	124518025	G	C	124518025	3	2	167	1	0	0	0	0	1	0	0	0	14387	942	33	2	822	2	SIAE	11	124518025	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	54261996	124518025	10488491	30	10040										
SLC38A4	0	genome.wustl.edu	37	chr12	47173756	47173756	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tattttcttcaagtcccatgAatgctctgattacttcaggt	6	9	4	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	47173756	47173756	A	G	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	missense	c.551	p.F184S	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	229	0	0	148	122	45.19	-	-	-	G	47173756	A	G	47173756	3	3	167	1	0	0	0	0	1	0	0	0	14695	246	9	5	1132	5	SLC38A4	12	47173756	Missense_Mutation	SNP	A	TCGA-A8-A07B-01A-11W-A019-09		47173756	86678139	31	10041										
KRT2	0	genome.wustl.edu	37	chr12	53040550	53040550	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tcctcgccctccagcagtttGcggtaggtggcgatctccac	11	15	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	53040550	53040550	G	T	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	silent	c.1443	p.R481	0.886	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	246	0	0	295	44	12.98	-	-	-	T	53040550	G	T	53040550	2	4	167	1	0	0	0	0	0	0	0	1	8510	1306	46	4		4	KRT2	12	53040550	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	5866794	53040550	80811345	32	10042										
DUSP6	0	genome.wustl.edu	37	chr12	89743172	89743172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tccagcagctgacccatgaaGttgaagttaggggatatgtt	12	7	0	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	89743172	89743172	G	A	SNP	DUSP6	ENST00000279488	human	ensembl	69_37n	-1	known	silent	c.1005	p.N335	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP6	HGNC	ENSG00000139318	104	0	0	42	13	23.64	-	-	-	A	89743172	G	A	89743172	2	1	167	1	0	0	0	0	0	0	0	1	4864	1020	36	4		4	DUSP6	12	89743172	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	36702622	89743172	44108723	33	10043										
GNPTAB	0	genome.wustl.edu	37	chr12	102164928	102164928	+	Frame_Shift_Del	DEL	A	A	-													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ctacactggcctctgaatacAactgcaactatcaaataaca							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	102164928	102164928	A	-	DEL	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	frame_shift_del	c.779	p.L260fs	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	181	0	0	161	83	33.33	-	-	-	-	102164928	A	-	102164928	7	5	167	1	0	1	0	1	0	0	0	0	6597	131	5	0	3047	0	GNPTAB	12	102164928	Frame_Shift_Del	DEL	A	TCGA-A8-A07B-01A-11W-A019-09	12421756	102164928	31686967	34	10044										
STAB2	0	genome.wustl.edu	37	chr12	104106175	104106175	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aactcagatggtacagcttcAtgcaagtgtgcagcaggatt	11	8	2	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	104106175	104106175	A	G	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	silent	c.4365	p.S1455	0.001	smart_EGF-like_Ca-bd,smart_EGF-like,smart_Prot_inh_squash,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	116	0	0	107	29	21.32	-	-	-	G	104106175	A	G	104106175	2	3	167	1	0	0	0	0	0	0	0	1	15329	204	8	5		5	STAB2	12	104106175	Silent	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	1941247	104106175	29745720	35	10045										
WSCD2	0	genome.wustl.edu	37	chr12	108634315	108634315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ctgcgcatgcccactggaagGgcaaaggtacagctcgggag	15	11	0	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	108634315	108634315	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.1339	p.G447S	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	48	0	0	27	11	28.95	-	-	-	A	108634315	G	A	108634315	3	1	167	1	0	0	0	0	1	0	0	0	17504	1232	43	4	1365	4	WSCD2	12	108634315	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	4528140	108634315	25217580	36	10046										
TBX5	0	genome.wustl.edu	37	chr12	114793477	114793477	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aggggactgcaggccagtctGaggcccacactgcctgacca	13	14	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	12	114793477	114793477	G	C	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.1417	p.Q473E	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	23	0	0	24	19	44.19	-	-	-	C	114793477	G	C	114793477	3	2	167	1	0	0	0	0	1	0	0	0	15756	1299	45	2	143	2	TBX5	12	114793477	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	6159162	114793477	19058418	37	10047										
STARD13	0	genome.wustl.edu	37	chr13	33859766	33859766	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggctggggtcctgggcacctGactgaacatctcggcagatt	14	11	1	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	13	33859766	33859766	G	A	SNP	STARD13	ENST00000336934	human	ensembl	69_37n	-1	known	nonsense	c.10	p.Q4*	0.995	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121	290	0	0	59	188	76.11	-	-	-	A	33859766	G	A	33859766	4	1	167	1	0	0	0	0	0	1	0	0	15347	1299	45	2	3536	2	STARD13	13	33859766	Nonsense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09		33859766	81310112	38	10048										
KTN1	0	genome.wustl.edu	37	chr14	56130713	56130713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggaagcaatggaagcattggCatcaactgaaaaaatgctgc	11	7	1	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	14	56130713	56130713	C	T	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.3131	p.A1044V	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	151	0	0	105	53	33.54	-	-	-	T	56130713	C	T	56130713	3	4	167	1	0	0	0	0	1	0	0	0	8639	710	25	4	3257	4	KTN1	14	56130713	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		56130713	51218827	39	10049										
DYNC1H1	0	genome.wustl.edu	37	chr14	102481649	102481649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aagaggatgagggggaggagGccgcttcccccatgctgcag	17	10	0	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	14	102481649	102481649	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.7222	p.A2408T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	42	0	0	45	11	19.64	-	-	-	A	102481649	G	A	102481649	3	1	167	1	0	0	0	0	1	0	0	0	4876	1203	42	4	7360	4	DYNC1H1	14	102481649	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	46350936	102481649	4867891	40	10050										
TUBGCP4	0	genome.wustl.edu	37	chr15	43687823	43687823	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tgggacgtggagaactgtttCaggccttcattgacacagct	12	9	2	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	15	43687823	43687823	C	A	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.1108	p.Q370K	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	665	0	0	542	196	26.56	-	-	-	A	43687823	C	A	43687823	3	1	167	1	0	0	0	0	1	0	0	0	16865	827	29	2	1150	2	TUBGCP4	15	43687823	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		43687823	58843569	41	10051										
ZNF592	0	genome.wustl.edu	37	chr15	85327107	85327107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	tcctgccagatcctgatgatCcaagtaagtcccctgttggg	10	12	0	3			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	15	85327107	85327107	C	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.1201	p.P401S	0.902	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	67	0	0	63	17	21.25	-	-	-	T	85327107	C	T	85327107	3	4	167	1	0	0	0	0	1	0	0	0	18118	855	30	2	1203	2	ZNF592	15	85327107	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	41639284	85327107	17204285	42	10052										
KIAA0430	0	genome.wustl.edu	37	chr16	15696497	15696498	+	Frame_Shift_Ins	INS	-	-	C													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggaaggaaagaaggaagaggINSagaaagaaaaggaggaggga							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	16	15696497	15696498	-	C	INS	KIAA0430	ENST00000344181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3322_3321	p.P1107fs	0.001:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	14	0	0	12	11	47.83	-	-	-	C	15696498	-	C	15696497	7	5	167	1	0	1	1	0	0	0	0	0	8229	1189	41	0		0	KIAA0430	16	15696497	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09		15696497	74658256	43	10053										
CDH1	0	genome.wustl.edu	37	chr16	68842662	68842662	+	Frame_Shift_Del	DEL	C	C	-													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ctggccaaggagctgacacaCcccctgttggtgtctttatt							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	16	68842662	68842662	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.598	p.P201fs	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	112	0	0	62	71	52.21	-	-	-	-	68842662	C	-	68842662	7	5	167	1	0	1	0	1	0	0	0	0	3124	507	18	0	616	0	CDH1	16	68842662	Frame_Shift_Del	DEL	C	TCGA-A8-A07B-01A-11W-A019-09	53146165	68842662	21512091	44	10054	82	3								
CDH1	0	genome.wustl.edu	37	chr16	68842664	68842664	+	Missense_Mutation	SNP	C	C	A													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ggccaaggagctgacacaccCcctgttggtgtctttattat							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	16	68842664	68842664	C	A	SNP	CDH1	ENST00000561751	human	ensembl	69_37n	1	known	missense	c.367	p.P123T	0.691	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,pfscan_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDH1	HGNC	ENSG00000039068	114	0	0	59	76	55.07	-	-	-	A	68842664	C	A	68842664	3	1	167	1	0	0	0	0	1	0	0	0	3124	610	22	4	618	4	CDH1	16	68842664	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	2	68842664	21512089	45	10055	82	3								
CDH1	0	genome.wustl.edu	37	chr16	68842665	68842665	+	Missense_Mutation	SNP	C	C	G													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gccaaggagctgacacacccCctgttggtgtctttattatt							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	16	68842665	68842665	C	G	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.601	p.P201A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	114	0	0	61	77	55.8	-	-	-	G	68842665	C	G	68842665	3	3	167	1	0	0	0	0	1	0	0	0	3124	623	22	4	619	4	CDH1	16	68842665	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	1	68842665	21512088	46	10056	82	3								
NFAT5	0	genome.wustl.edu	37	chr16	69726520	69726521	+	Frame_Shift_Ins	INS	-	-	A													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gcagctgcccagattcagtcINSagagttattcccttcaactg							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	16	69726520	69726521	-	A	INS	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	frame_shift_ins	c.2792_2793	p.E932fs	0.998:0.206	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	235	0	0	80	115	58.97	-	-	-	A	69726521	-	A	69726520	7	5	167	1	0	1	1	0	0	0	0	0	10432	838	29	0	2842	0	NFAT5	16	69726520	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09	883855	69726520	20628233	47	10057										
ACACA	0	genome.wustl.edu	37	chr17	35454000	35454000	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	atctggccatcagtcagctcAgggttggcattgtggatttt	12	8	4	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	17	35454000	35454000	A	G	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	silent	c.6822	p.P2274	0.994	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	92	0	0	53	22	29.33	-	-	-	G	35454000	A	G	35454000	2	3	167	1	0	0	0	0	0	0	0	1	106	175	7	5		5	ACACA	17	35454000	Silent	SNP	A	TCGA-A8-A07B-01A-11W-A019-09		35454000	45741210	48	10058										
MPP3	0	genome.wustl.edu	37	chr17	41888280	41888280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ttatattcaccatgttccagGaacctaaaacaccaccaaag	4	12	1	0			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	17	41888280	41888280	G	T	SNP	MPP3	ENST00000398389	human	ensembl	69_37n	-1	known	missense	c.1353	p.F451L	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP3	HGNC	ENSG00000161647	187	0	0	558	82	12.81	-	-	-	T	41888280	G	T	41888280	3	4	167	1	0	0	0	0	1	0	0	0	9807	1165	41	2	416	2	MPP3	17	41888280	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	6434280	41888280	39306930	49	10059										
CCDC47	0	genome.wustl.edu	37	chr17	61829358	61829359	+	Frame_Shift_Ins	INS	-	-	T													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gattcgctccttctctgctcINStttttttctcctcccgccga							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	17	61829358	61829359	-	T	INS	CCDC47	ENST00000225726	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1313_1312	p.R438fs	1.000:0.998	pfam_DUF1682	pfam_DUF1682	-	no_errors	CCDC47	HGNC	ENSG00000108588	124	0	0	192	31	13.9	-	-	-	T	61829359	-	T	61829358	7	5	167	1	0	1	1	0	0	0	0	0	2845	913	32	0	146	0	CCDC47	17	61829358	Frame_Shift_Ins	INS	-	TCGA-A8-A07B-01A-11W-A019-09	19941078	61829358	19365852	50	10060										
HOOK2	0	genome.wustl.edu	37	chr19	12874242	12874242	+	Frame_Shift_Del	DEL	T	T	-													0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	agctcgctgctgcaaggccaTgcccttcaggaggaggtgtg							TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	19	12874242	12874242	T	-	DEL	HOOK2	ENST00000397668	human	ensembl	69_37n	-1	known	frame_shift_del	c.2014	p.M672fs	0.993	pfam_HOOK	pfam_HOOK,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066	84	0	0	29	65	67.71	-	-	-	-	12874242	T	-	12874242	7	5	167	1	0	1	0	1	0	0	0	0	7334	1464	51	0	149	0	HOOK2	19	12874242	Frame_Shift_Del	DEL	T	TCGA-A8-A07B-01A-11W-A019-09		12874242	46254741	51	10061										
ZNF431	0	genome.wustl.edu	37	chr19	21366706	21366706	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ttactaaacataggaaaattCatactagacagaaaccctac	4	9	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	19	21366706	21366706	C	T	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.1600	p.H534Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	212	0	0	224	155	40.9	-	-	-	T	21366706	C	T	21366706	3	4	167	1	0	0	0	0	1	0	0	0	18001	826	29	2	1618	2	ZNF431	19	21366706	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	8492464	21366706	37762277	52	10062										
RYR1	0	genome.wustl.edu	37	chr19	39025994	39025994	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aaggacaagaaggaagttggCttcttccagagtatccaggc	12	8	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	19	39025994	39025994	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.11478	p.G3826	0.999	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	211	0	0	195	79	28.83	-	-	-	T	39025994	C	T	39025994	2	4	167	1	0	0	0	0	0	0	0	1	13854	784	28	4		4	RYR1	19	39025994	Silent	SNP	C	TCGA-A8-A07B-01A-11W-A019-09	17659288	39025994	20102989	53	10063										
C20orf96	0	genome.wustl.edu	37	chr20	259038	259038	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ttcaattgctgcagcctcttCttgtttgagtactccaagat	7	10	3	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	20	259038	259038	C	T	SNP	C20orf96	ENST00000360321	human	ensembl	69_37n	-1	known	silent	c.498	p.K166	0.414	NULL	NULL	-	no_errors	C20orf96	HGNC	ENSG00000196476	69	0	0	65	21	24.14	-	-	-	T	259038	C	T	259038	2	4	167	1	0	0	0	0	0	0	0	1	2142	912	32	2		2	C20orf96	20	259038	Silent	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		259038	62766482	54	10064										
ACSS1	0	genome.wustl.edu	37	chr20	24988539	24988539	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	ttcctcaggagccgccgcatGaccttcccagacctggtttt	9	15	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	20	24988539	24988539	G	A	SNP	ACSS1	ENST00000323482	human	ensembl	69_37n	-1	known	silent	c.1929	p.V643	1.000	tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930	62	0	0	37	31	45.59	-	-	-	A	24988539	G	A	24988539	2	1	167	1	0	0	0	0	0	0	0	1	188	1277	45	2		2	ACSS1	20	24988539	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	24729501	24988539	38036981	55	10065										
WFDC2	0	genome.wustl.edu	37	chr20	44108611	44108611	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gttcctgcccccaggtgaacAttaactttccccagctcggc	8	16	0	1			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	20	44108611	44108611	A	G	SNP	WFDC2	ENST00000372676	human	ensembl	69_37n	1	known	missense	c.253	p.I85V	0.000	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC2	HGNC	ENSG00000101443	355	0	0	113	108	48.65	-	-	-	G	44108611	A	G	44108611	3	3	167	1	0	0	0	0	1	0	0	0	17449	217	8	5	263	5	WFDC2	20	44108611	Missense_Mutation	SNP	A	TCGA-A8-A07B-01A-11W-A019-09	19120072	44108611	18916909	56	10066										
MCM3AP	0	genome.wustl.edu	37	chr21	47692480	47692480	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	gatgtgaaaattcaccttagGatgtctcccttgttgagact	9	8	2	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	21	47692480	47692480	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	silent	c.2460	p.I820	0.997	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	92	0	0	27	25	48.08	-	-	-	A	47692480	G	A	47692480	2	1	167	1	0	0	0	0	0	0	0	1	9459	1164	41	2		2	MCM3AP	21	47692480	Silent	SNP	G	TCGA-A8-A07B-01A-11W-A019-09		47692480	437415	57	10067										
TFIP11	0	genome.wustl.edu	37	chr22	26890837	26890837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	agagatcatcccttcccagtCaatcacccaatagaatgcat	5	13	3	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	22	26890837	26890837	C	T	SNP	TFIP11	ENST00000405938	human	ensembl	69_37n	-1	known	missense	c.1918	p.D640N	1.000	pfam_GCFC_dom	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109	142	1	0.7	95	27	22.13	-	-	-	T	26890837	C	T	26890837	3	4	167	1	0	0	0	0	1	0	0	0	15902	826	29	2	607	2	TFIP11	22	26890837	Missense_Mutation	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		26890837	24413729	58	10068										
MSL3	0	genome.wustl.edu	37	chrX	11783719	11783719	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	agccagaagcattgcagtctCtgaggcggtccacgcgccac	12	14	1	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	X	11783719	11783719	C	T	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	silent	c.1042	p.L348	0.999	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	166	0	0	67	52	43.33	-	-	-	T	11783719	C	T	11783719	2	4	167	1	0	0	0	0	0	0	0	1	9951	912	32	2		2	MSL3	23	11783719	Silent	SNP	C	TCGA-A8-A07B-01A-11W-A019-09		11783719	143486841	59	10069										
ARMCX1	0	genome.wustl.edu	37	chrX	100809228	100809228	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.293103448275862	17	9.07615153135961e-06	3.63503649635036	5.45255474452555	3.07580011229646	0.191355499233818	0.763859911227241	12	aagcactagcaaatcacaatGatctggtggtgaaagtaaaa	9	6	2	2			TCGA-A8-A07B-01A-11W-A019-09	TCGA-A8-A07B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	734421b9-ed55-45b0-9ad5-51bc754ebe90	0a007a6c-2f85-4061-9949-841299150cfc	X	100809228	100809228	G	A	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.1315	p.D439N	0.997	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	353	0	0	208	110	34.59	-	-	-	A	100809228	G	A	100809228	3	1	167	1	0	0	0	0	1	0	0	0	963	1290	45	2	1317	2	ARMCX1	23	100809228	Missense_Mutation	SNP	G	TCGA-A8-A07B-01A-11W-A019-09	89025509	100809228	54461332	60	10070										
TAS1R3	0	genome.wustl.edu	37	chr1	1268387	1268387	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggaaacgtggacatggagtaCgacctgaagctgtgggtgtg	17	6	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	1268387	1268387	C	G	SNP	TAS1R3	ENST00000339381	human	ensembl	69_37n	1	known	nonsense	c.1362	p.Y454*	0.060	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	9	0	0	4	15	78.95	-	-	-	G	1268387	C	G	1268387	4	3	168	1	0	0	0	0	0	1	0	0	15656	547	19	3	1376	3	TAS1R3	1	1268387	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		1268387	247982234	1	10071										
ZBTB48	0	genome.wustl.edu	37	chr1	6642356	6642356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	atattatctaaaagtccacaAcaggtaaacgttctgttttt	5	7	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	6642356	6642356	A	G	SNP	ZBTB48	ENST00000377674	human	ensembl	69_37n	1	known	missense	c.929	p.N310S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859	53	0	0	31	50	61.73	-	-	-	G	6642356	A	G	6642356	3	3	168	1	0	0	0	0	1	0	0	0	17645	43	2	5	935	5	ZBTB48	1	6642356	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	5373969	6642356	242608265	2	10072										
CASZ1	0	genome.wustl.edu	37	chr1	10707928	10707928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tagagaagtcgttgccaaggGcgaggcgggcaggtgaggca	19	7	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	10707928	10707928	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.3427	p.P1143S	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	27	0	0	47	49	51.04	-	-	-	A	10707928	G	A	10707928	3	1	168	1	0	0	0	0	1	0	0	0	2710	1203	42	4	1880	4	CASZ1	1	10707928	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	4065572	10707928	238542693	3	10073										
ZBTB17	0	genome.wustl.edu	37	chr1	16272250	16272250	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aaagcggcctcagcttctgcAgcagccatgccactcgtggg	12	14	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	16272250	16272250	A	C	SNP	ZBTB17	ENST00000375733	human	ensembl	69_37n	-1	known	silent	c.621	p.A207	0.181	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	12	0	0	3	6	54.55	-	-	-	C	16272250	A	C	16272250	2	2	168	1	0	0	0	0	0	0	0	1	17623	175	7	5		5	ZBTB17	1	16272250	Silent	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	5564322	16272250	232978371	4	10074										
EPHB2	0	genome.wustl.edu	37	chr1	23191470	23191470	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tccggaggccgagaggacctCgtctacaacatcatctgcaa	10	13	3	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	23191470	23191470	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	silent	c.1068	p.L356	0.907	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	30	0	0	6	17	73.91	-	-	-	T	23191470	C	T	23191470	2	4	168	1	0	0	0	0	0	0	0	1	5212	871	31	1		1	EPHB2	1	23191470	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	6919220	23191470	226059151	5	10075										
IL28RA	0	genome.wustl.edu	37	chr1	24496055	24496055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agctccttggttcccgcacaCtcttccacttcgcgccaccg	7	19	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	24496055	24496055	C	T	SNP	IL28RA	ENST00000327535	human	ensembl	69_37n	-1	known	silent	c.219	p.E73	0.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL28RA	HGNC	ENSG00000185436	47	0	0	22	14	38.89	-	-	-	T	24496055	C	T	24496055	2	4	168	1	0	0	0	0	0	0	0	1	7738	564	20	4		4	IL28RA	1	24496055	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	1304585	24496055	224754566	6	10076										
COL16A1	0	genome.wustl.edu	37	chr1	32157643	32157644	+	In_Frame_Ins	INS	-	-	CGT													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cggcacgcccttgatgcctcINScgtcgcccttctcgcctttc							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	32157643	32157644	-	CGT	INS	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	in_frame_ins	c.1220_1219	p.407in_frame_insD	0.820:0.786	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	40	0	0	15	15	50	-	-	-	CGT	32157644	-	CGT	32157643	7	5	168	1	0	1	1	0	0	0	0	0	3703	855	30	0	3814	0	COL16A1	1	32157643	In_Frame_Ins	INS	-	TCGA-A8-A07C-01A-11D-A045-09	7661588	32157643	217092978	7	10077										
SYNC	0	genome.wustl.edu	37	chr1	33160900	33160900	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gaaatcggcaaactgagccaCgtcctgctggcggcactcca	11	14	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	33160900	33160900	C	G	SNP	SYNC	ENST00000409190	human	ensembl	69_37n	-1	known	missense	c.799	p.V267L	0.993	pfam_F	pfam_F	-	no_errors	SYNC	HGNC	ENSG00000162520	50	0	0	5	19	79.17	-	-	-	G	33160900	C	G	33160900	3	3	168	1	0	0	0	0	1	0	0	0	15535	536	19	3	727	3	SYNC	1	33160900	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	1003257	33160900	216089721	8	10078										
TARS2	0	genome.wustl.edu	37	chr1	150469292	150469292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	attcctgaccccaggaacagGagctcttcttcttccatgaa	7	13	3	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	150469292	150469292	G	A	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.928	p.E310K	1.000	tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	160	0	0	231	39	14.39	-	-	-	A	150469292	G	A	150469292	3	1	168	1	0	0	0	0	1	0	0	0	15652	1175	41	2	962	2	TARS2	1	150469292	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	117308392	150469292	98781329	9	10079										
LCE2D	0	genome.wustl.edu	37	chr1	152636666	152636666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caaaatgtccacctaagtgtCcccccaaatgcccaccacag	5	17	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	152636666	152636666	C	T	SNP	LCE2D	ENST00000368784	human	ensembl	69_37n	1	known	missense	c.85	p.P29S	0.080	NULL	NULL	-	no_errors	LCE2D	HGNC	ENSG00000187223	320	1	0.31	435	240	35.5	-	-	-	T	152636666	C	T	152636666	3	4	168	1	0	0	0	0	1	0	0	0	8722	855	30	2	87	2	LCE2D	1	152636666	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	2167374	152636666	96613955	10	10080										
TRIM46	0	genome.wustl.edu	37	chr1	155156289	155156289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gcaggtacgacccggacagcGggcacgacagcggtgccgag	17	13	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	155156289	155156289	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1903	p.G635R	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	20	0	0	11	45	80.36	-	-	-	A	155156289	G	A	155156289	3	1	168	1	0	0	0	0	1	0	0	0	16617	1116	39	1	1941	1	TRIM46	1	155156289	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	2519623	155156289	94094332	11	10081										
THBS3	0	genome.wustl.edu	37	chr1	155176016	155176016	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttgatcttgcctacaacagaGgcctccagccatcgagtgtt	9	12	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	155176016	155176016	G	C	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	silent	c.261	p.A87	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	70	0	0	158	45	22.17	-	-	-	C	155176016	G	C	155176016	2	2	168	1	0	0	0	0	0	0	0	1	15950	987	35	4		4	THBS3	1	155176016	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	19727	155176016	94074605	12	10082										
FMO1	0	genome.wustl.edu	37	chr1	171251162	171251162	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aatgatgagctcccaggacgCatcatcactgggaaagtgtt	11	9	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	171251162	171251162	C	T	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	silent	c.873	p.R291	0.127	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	69	0	0	93	27	22.5	-	-	-	T	171251162	C	T	171251162	2	4	168	1	0	0	0	0	0	0	0	1	6000	697	25	4		4	FMO1	1	171251162	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	16075146	171251162	77999459	13	10083										
ASTN1	0	genome.wustl.edu	37	chr1	176992609	176992609	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	acagaggtccatggcccaggGtccgctggagttctgctgag	15	11	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	176992609	176992609	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1369	p.P457T	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	120	0	0	15	29	65.91	-	-	-	T	176992609	G	T	176992609	3	4	168	1	0	0	0	0	1	0	0	0	1068	1261	44	4	2587	4	ASTN1	1	176992609	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	5741447	176992609	72258012	14	10084										
ITPKB	0	genome.wustl.edu	37	chr1	226825421	226825421	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agaaacttctagagtggttcGaatggccttcagccggtccc	11	11	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	1	226825421	226825421	G	A	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	nonsense	c.2584	p.R862*	0.991	pfam_IPK	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	155	0	0	77	75	49.02	-	-	-	A	226825421	G	A	226825421	4	1	168	1	0	0	0	0	0	1	0	0	7972	1066	37	1	264	1	ITPKB	1	226825421	Nonsense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	49832812	226825421	22425200	15	10085										
DHX57	0	genome.wustl.edu	37	chr2	39046255	39046255	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caaattccagctttttctggTtagcttcttcttttttatcc	4	10	3	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	39046255	39046255	T	A	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.3323	p.N1108I	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	109	0	0	462	59	11.32	-	-	-	A	39046255	T	A	39046255	3	1	168	1	0	0	0	0	1	0	0	0	4549	1725	60	5	865	5	DHX57	2	39046255	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09		39046255	204153118	16	10086										
VPS54	0	genome.wustl.edu	37	chr2	64148377	64148377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gaaatttgacagctcgatcaTggcatatatctgaggcacta	9	8	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	64148377	64148377	T	C	SNP	VPS54	ENST00000272322	human	ensembl	69_37n	-1	known	missense	c.1832	p.H611R	1.000	NULL	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952	82	0	0	100	103	50.74	-	-	-	C	64148377	T	C	64148377	3	2	168	1	0	0	0	0	1	0	0	0	17313	1464	51	5	1145	5	VPS54	2	64148377	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	25102122	64148377	179050996	17	10087										
RETSAT	0	genome.wustl.edu	37	chr2	85570864	85570864	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agccccgtagcaggcacctcGgggagcagccagatagaact	13	13	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	85570864	85570864	G	A	SNP	RETSAT	ENST00000295802	human	ensembl	69_37n	-1	known	nonsense	c.1591	p.R531*	0.011	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445	108	0	0	63	34	35.05	-	-	-	A	85570864	G	A	85570864	4	1	168	1	0	0	0	0	0	1	0	0	13321	1124	39	1	249	1	RETSAT	2	85570864	Nonsense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	21422487	85570864	157628509	18	10088										
ZNF514	0	genome.wustl.edu	37	chr2	95815408	95815408	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aatctatagtgcagaacaagAgacgaactctggctgaaggc	11	8	2	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	95815408	95815408	A	T	SNP	ZNF514	ENST00000295208	human	ensembl	69_37n	-1	known	silent	c.822	p.S274	0.039	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	212	1	0.47	180	38	17.43	-	-	-	T	95815408	A	T	95815408	2	4	168	1	0	0	0	0	0	0	0	1	18055	291	11	5		5	ZNF514	2	95815408	Silent	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	10244544	95815408	147383965	19	10089										
DARS	0	genome.wustl.edu	37	chr2	136678156	136678156	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	atgtctatgggtattagagtCttccgctctgaatactgtga	10	7	3	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	136678156	136678156	C	A	SNP	DARS	ENST00000264161	human	ensembl	69_37n	-1	known	missense	c.826	p.D276Y	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	-	no_errors	DARS	HGNC	ENSG00000115866	101	0	0	66	127	65.8	-	-	-	A	136678156	C	A	136678156	3	1	168	1	0	0	0	0	1	0	0	0	4273	913	32	2	707	2	DARS	2	136678156	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	40862748	136678156	106521217	20	10090										
SCN1A	0	genome.wustl.edu	37	chr2	166850747	166850747	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gagatgagtttcagtacacaCtctccagtaaatagcacaat	7	9	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	166850747	166850747	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4761	p.E1587D	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	163	0	0	148	42	22.11	-	-	-	G	166850747	C	G	166850747	3	3	168	1	0	0	0	0	1	0	0	0	14002	564	20	4	1276	4	SCN1A	2	166850747	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	30172591	166850747	76348626	21	10091										
ASNSD1	0	genome.wustl.edu	37	chr2	190531576	190531576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccaaactgtatcttgaaaaaCctgttgttcctttaaatatg	5	8	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	190531576	190531576	C	T	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.718	p.P240S	1.000	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	38	0	0	35	10	22.22	-	-	-	T	190531576	C	T	190531576	3	4	168	1	0	0	0	0	1	0	0	0	1053	507	18	4	720	4	ASNSD1	2	190531576	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	23680829	190531576	52667797	22	10092										
ERBB4	0	genome.wustl.edu	37	chr2	212989493	212989493	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttacccgcaggaaggagaggTcccggttgtgctcaatgctg	14	10	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	212989493	212989493	T	A	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.218	p.D73V	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	126	0	0	106	51	32.48	-	-	-	A	212989493	T	A	212989493	3	1	168	1	0	0	0	0	1	0	0	0	5246	1667	58	5	3816	5	ERBB4	2	212989493	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	22457917	212989493	30209880	23	10093										
TNP1	0	genome.wustl.edu	37	chr2	217724400	217724400	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cgctgggggctcacaagtggGagcggtaattgcgattggct	17	8	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	217724400	217724400	G	C	SNP	TNP1	ENST00000236979	human	ensembl	69_37n	-1	known	missense	c.158	p.S53C	1.000	pfam_Nuclear_transition_prot1	pfam_Nuclear_transition_prot1	-	no_errors	TNP1	HGNC	ENSG00000118245	191	0	0	118	74	38.54	-	-	-	C	217724400	G	C	217724400	3	2	168	1	0	0	0	0	1	0	0	0	16428	1174	41	2	13	2	TNP1	2	217724400	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	4734907	217724400	25474973	24	10094										
STK11IP	0	genome.wustl.edu	37	chr2	220479214	220479214	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ctaggccattgctggaaaaaGactcatccttggaggctcgc	11	11	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	220479214	220479214	G	T	SNP	STK11IP	ENST00000456909	human	ensembl	69_37n	1	novel	missense	c.2815	p.D939Y	0.002	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	29	0	0	127	98	43.56	-	-	-	T	220479214	G	T	220479214	3	4	168	1	0	0	0	0	1	0	0	0	15379	942	33	2	2938	2	STK11IP	2	220479214	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	2754814	220479214	22720159	25	10095										
PASK	0	genome.wustl.edu	37	chr2	242076654	242076654	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tggtaccgtccctggctcttCcaacagacctctgaatcttg	8	14	3	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	2	242076654	242076654	C	A	SNP	PASK	ENST00000433589	human	ensembl	69_37n	-1	novel	nonsense	c.346	p.E116*	0.920	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PASK	HGNC	ENSG00000115687	43	0	0	6	21	77.78	-	-	-	A	242076654	C	A	242076654	4	1	168	1	0	0	0	0	0	1	0	0	11545	855	30	2	3117	2	PASK	2	242076654	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	21597440	242076654	1122719	26	10096										
VILL	0	genome.wustl.edu	37	chr3	38035842	38035842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gtgcggaagcgcagggcgctGcggaggccttccagcagcgc	18	13	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	38035842	38035842	G	A	SNP	VILL	ENST00000283713	human	ensembl	69_37n	1	known	missense	c.226	p.A76T	0.943	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	16	0	0	3	9	75	-	-	-	A	38035842	G	A	38035842	3	1	168	1	0	0	0	0	1	0	0	0	17262	1319	46	4	236	4	VILL	3	38035842	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		38035842	159986588	27	10097										
FYCO1	0	genome.wustl.edu	37	chr3	46021263	46021263	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	accttggccaggcaggcacaGaagtaatcccagtagtcctt	10	12	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	46021263	46021263	G	T	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.222	p.F74L	1.000	pfam_Run,pfscan_Run	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	240	0	0	163	47	22.38	-	-	-	T	46021263	G	T	46021263	3	4	168	1	0	0	0	0	1	0	0	0	6174	933	33	2	4274	2	FYCO1	3	46021263	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	7985421	46021263	152001167	28	10098										
NBEAL2	0	genome.wustl.edu	37	chr3	47033996	47033996	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gtcccgggcgccccccgaggGggacagtgacctggctaccc	15	17	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	47033996	47033996	G	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.1064	p.G355A	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	23	0	0	26	21	44.68	-	-	-	C	47033996	G	C	47033996	3	2	168	1	0	0	0	0	1	0	0	0	10261	1232	43	4	1102	4	NBEAL2	3	47033996	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	1012733	47033996	150988434	29	10099										
SCAP	0	genome.wustl.edu	37	chr3	47463968	47463968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agggtgaagtagccgatgagGatgatgcccagctccgtggc	16	9	0	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	47463968	47463968	G	A	SNP	SCAP	ENST00000320017	human	ensembl	69_37n	-1	known	missense	c.424	p.P142S	1.000	NULL	NULL	-	no_errors	SCAP	HGNC	ENSG00000114650	59	0	0	15	16	51.61	-	-	-	A	47463968	G	A	47463968	3	1	168	1	0	0	0	0	1	0	0	0	13964	1164	41	2	2686	2	SCAP	3	47463968	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	429972	47463968	150558462	30	10100										
TM4SF1	0	genome.wustl.edu	37	chr3	149095318	149095318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aatgtccgatgcatcgtgcaCacttcccatagcacatggtg	9	12	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	149095318	149095318	C	A	SNP	TM4SF1	ENST00000305366	human	ensembl	69_37n	-1	known	missense	c.17	p.C6F	0.976	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908	227	0	0	102	82	44.57	-	-	-	A	149095318	C	A	149095318	3	1	168	1	0	0	0	0	1	0	0	0	16061	478	17	4	611	4	TM4SF1	3	149095318	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	101631350	149095318	48927112	31	10101										
MED12L	0	genome.wustl.edu	37	chr3	151107820	151107820	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cctaattactcgcctatctcCtcccaaatgatgcaccatcc	3	17	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	151107820	151107820	C	G	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.5400	p.S1800	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	135	0	0	137	73	34.6	-	-	-	G	151107820	C	G	151107820	2	3	168	1	0	0	0	0	0	0	0	1	9500	668	24	4		4	MED12L	3	151107820	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	2012502	151107820	46914610	32	10102										
IGSF10	0	genome.wustl.edu	37	chr3	151165107	151165107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aaagacagtggatgaatgttGattggttgtgccttgtattt	12	3	0	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	151165107	151165107	G	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.2662	p.Q888E	0.003	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	216	0	0	122	112	47.86	-	-	-	C	151165107	G	C	151165107	3	2	168	1	0	0	0	0	1	0	0	0	7651	1299	45	2	5269	2	IGSF10	3	151165107	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	57287	151165107	46857323	33	10103										
MECOM	0	genome.wustl.edu	37	chr3	168833701	168833701	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tcattcacagctcctgacacCgcagtctgctcctctaaaga	6	15	4	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	3	168833701	168833701	C	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.1959	p.A653	0.998	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	750	0	0	456	450	49.61	-	-	-	T	168833701	C	T	168833701	2	4	168	1	0	0	0	0	0	0	0	1	9493	639	23	1		1	MECOM	3	168833701	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	17668594	168833701	29188729	34	10104										
WHSC1	0	genome.wustl.edu	37	chr4	1953848	1953848	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cccgcagctgtgtgagaagcCgggcagcctcctgctctgtg	14	14	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	1953848	1953848	C	G	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	missense	c.2027	p.P676R	0.219	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_superfamily,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_PWWP,smart_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_superfamily	-	no_errors	WHSC1	HGNC	ENSG00000109685	50	0	0	15	4	21.05	-	-	-	G	1953848	C	G	1953848	3	3	168	1	0	0	0	0	1	0	0	0	17459	652	23	3	2141	3	WHSC1	4	1953848	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		1953848	189200428	35	10105										
LDB2	0	genome.wustl.edu	37	chr4	16507531	16507531	+	Silent	SNP	G	G	C													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tccttaaattggccagaaggGgtcactgctgttgaatgaca							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	16507531	16507531	G	C	SNP	LDB2	ENST00000441778	human	ensembl	69_37n	-1	known	silent	c.966	p.T322	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	186	0	0	62	15	19.23	-	-	-	C	16507531	G	C	16507531	2	2	168	1	0	0	0	0	0	0	0	1	8750	1219	43	4		4	LDB2	4	16507531	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	14553683	16507531	174646745	36	10106	83	2								
LDB2	0	genome.wustl.edu	37	chr4	16507532	16507532	+	Missense_Mutation	SNP	G	G	T													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccttaaattggccagaagggGtcactgctgttgaatgacac							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	16507532	16507532	G	T	SNP	LDB2	ENST00000441778	human	ensembl	69_37n	-1	known	missense	c.965	p.T322N	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	182	0	0	63	15	19.23	-	-	-	T	16507532	G	T	16507532	3	4	168	1	0	0	0	0	1	0	0	0	8750	1261	44	4	269	4	LDB2	4	16507532	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	1	16507532	174646744	37	10107	83	2								
RUFY3	0	genome.wustl.edu	37	chr4	71654523	71654524	+	Frame_Shift_Ins	INS	-	-	A													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tacttacctttgggggcaggINSatgttgagaaagaactggag							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	71654523	71654524	-	A	INS	RUFY3	ENST00000417478	human	ensembl	69_37n	1	known	frame_shift_ins	c.1252_1253	p.D418fs	1.000:1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	98	0	0	74	26	26	-	-	-	A	71654524	-	A	71654523	7	5	168	1	0	1	1	0	0	0	0	0	13826	1188	41	0	1476	0	RUFY3	4	71654523	Frame_Shift_Ins	INS	-	TCGA-A8-A07C-01A-11D-A045-09	55146991	71654523	119499753	38	10108										
ELOVL6	0	genome.wustl.edu	37	chr4	110972768	110972768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	catagtaagagtacatcacgGcgtgcacgccatagttcata	9	10	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	110972768	110972768	G	T	SNP	ELOVL6	ENST00000394607	human	ensembl	69_37n	-1	known	missense	c.524	p.A175D	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL6	HGNC	ENSG00000170522	56	0	0	28	6	17.65	-	-	-	T	110972768	G	T	110972768	3	4	168	1	0	0	0	0	1	0	0	0	5115	1203	42	4	277	4	ELOVL6	4	110972768	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	39318245	110972768	80181508	39	10109										
WDR17	0	genome.wustl.edu	37	chr4	177071740	177071740	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gaaacatctgattaaatttaGaacagtgagtaaaatatgca	7	4	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	4	177071740	177071740	G	C	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.2372	p.R791T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	96	0	0	49	56	53.33	-	-	-	C	177071740	G	C	177071740	3	2	168	1	0	0	0	0	1	0	0	0	17374	942	33	2	2434	2	WDR17	4	177071740	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	66098972	177071740	14082536	40	10110										
BRD9	0	genome.wustl.edu	37	chr5	870649	870649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	taggacttcatcgacatgaaCtccagaacagagctgctgct	9	11	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	870649	870649	C	T	SNP	BRD9	ENST00000519112	human	ensembl	69_37n	-1	known	missense	c.326	p.S109N	0.722	pfam_DUF3512	pfam_DUF3512	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRD9	HGNC	ENSG00000028310	142	0	0	61	59	49.17	-	-	-	T	870649	C	T	870649	3	4	168	1	0	0	0	0	1	0	0	0	1515	564	20	4	341	4	BRD9	5	870649	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		870649	180044611	41	10111										
ZFR	0	genome.wustl.edu	37	chr5	32355898	32355898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ataatcttttttgtctttttTcccctcagcttcaaatccat	2	11	4	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	32355898	32355898	T	C	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.3193	p.K1065E	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	136	0	0	192	59	23.51	-	-	-	C	32355898	T	C	32355898	3	2	168	1	0	0	0	0	1	0	0	0	17755	1792	62	5	35	5	ZFR	5	32355898	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	31485249	32355898	148559362	42	10112										
FST	0	genome.wustl.edu	37	chr5	52779526	52779526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	taaagagcagccagaactggAagtccagtaccaaggcagat	11	9	0	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	52779526	52779526	A	G	SNP	FST	ENST00000256759	human	ensembl	69_37n	1	known	missense	c.470	p.E157G	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	FST	HGNC	ENSG00000134363	81	0	0	46	23	33.33	-	-	-	G	52779526	A	G	52779526	3	3	168	1	0	0	0	0	1	0	0	0	6125	246	9	5	480	5	FST	5	52779526	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	20423628	52779526	128135734	43	10113										
IQGAP2	0	genome.wustl.edu	37	chr5	75993880	75993880	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gcaaaacttcagcagaccctGaatgcacttaacaagaaggc	8	11	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	75993880	75993880	G	C	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	silent	c.4275	p.L1425	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	143	0	0	55	89	61.81	-	-	-	C	75993880	G	C	75993880	2	2	168	1	0	0	0	0	0	0	0	1	7869	1277	45	2		2	IQGAP2	5	75993880	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	23214354	75993880	104921380	44	10114										
MCC	0	genome.wustl.edu	37	chr5	112458465	112458465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	catgcttcgagagtcctcgtTgacctcgtgttggctctggc	12	12	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	112458465	112458465	T	A	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	missense	c.373	p.N125Y	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	149	0	0	93	15	13.89	-	-	-	A	112458465	T	A	112458465	3	1	168	1	0	0	0	0	1	0	0	0	9444	1812	63	5	2172	5	MCC	5	112458465	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	36464585	112458465	68456795	45	10115										
RAPGEF6	0	genome.wustl.edu	37	chr5	130778206	130778206	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tttcagatgatttggctgatCttttctcacttaaattcttg	6	7	4	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	130778206	130778206	C	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.3446	p.R1149I	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	167	0	0	62	62	50	-	-	-	A	130778206	C	A	130778206	3	1	168	1	0	0	0	0	1	0	0	0	13131	913	32	2	1818	2	RAPGEF6	5	130778206	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	18319741	130778206	50137054	46	10116										
FAM71B	0	genome.wustl.edu	37	chr5	156590407	156590407	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tcatagcacctgttgcaggaCtcattgctgcccctgctatt	8	13	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	156590407	156590407	C	G	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.869	p.S290T	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	39	0	0	16	33	67.35	-	-	-	G	156590407	C	G	156590407	3	3	168	1	0	0	0	0	1	0	0	0	5653	565	20	4	952	4	FAM71B	5	156590407	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	25812201	156590407	24324853	47	10117										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171765983	171765983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gtttgcccgtcctgtcctggGcgcggccaggcccctctcct	12	18	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	5	171765983	171765983	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.2126	p.A709V	0.709	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	64	0	0	32	6	15.79	-	-	-	A	171765983	G	A	171765983	3	1	168	1	0	0	0	0	1	0	0	0	14346	1203	42	4	613	4	SH3PXD2B	5	171765983	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	15175576	171765983	9149277	48	10118										
ENPP5	0	genome.wustl.edu	37	chr6	46129132	46129132	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gcaggtatttgactgtgaatTaaatgcttaatgaaaattac	8	4	0	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	6	46129132	46129132	T	G	SNP	ENPP5	ENST00000230565	human	ensembl	69_37n	-1	known	missense	c.1365	p.L455F	1.000	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796	97	0	0	22	58	72.5	-	-	-	G	46129132	T	G	46129132	3	3	168	1	0	0	0	0	1	0	0	0	5170	1751	61	5	72	5	ENPP5	6	46129132	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09		46129132	124985935	49	10119										
DST	0	genome.wustl.edu	37	chr6	56458895	56458895	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cagtttctctttttcttcagGagagagatactgaccctgtt	8	9	3	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	6	56458895	56458895	G	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.12199	p.P4067T	0.122	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	92	0	0	129	40	23.67	-	-	-	T	56458895	G	T	56458895	3	4	168	1	0	0	0	0	1	0	0	0	4818	1174	41	2	11316	2	DST	6	56458895	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	10329763	56458895	114656172	50	10120										
CASP8AP2	0	genome.wustl.edu	37	chr6	90583529	90583529	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttttcttacattacagataaGttgctgaattcctgggactc	7	8	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	6	90583529	90583529	G	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	43	0	0	96	42	30.43	-	-	-	T	90583529	G	T	90583529	1	4	168	0	1	0	0	0	0	0	0	0	2703	1044	36	4		4	CASP8AP2	6	90583529	RNA	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	34124634	90583529	80531538	51	10121										
BACH2	0	genome.wustl.edu	37	chr6	90660843	90660844	+	Frame_Shift_Ins	INS	-	-	G													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ctcctggatctctccaggcaINSggcggccccagctggggccg							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	6	90660843	90660844	-	G	INS	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	frame_shift_ins	c.982_981	p.C327fs	0.998:0.989	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	62	0	0	36	4	10	-	-	-	G	90660844	-	G	90660843	7	5	168	1	0	1	1	0	0	0	0	0	1288	188	7	0	1555	0	BACH2	6	90660843	Frame_Shift_Ins	INS	-	TCGA-A8-A07C-01A-11D-A045-09	77314	90660843	80454224	52	10122										
PRDM1	0	genome.wustl.edu	37	chr6	106553637	106553637	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gtggtgcagcccaaagctacCtcagcagcgatggcagcccc	12	15	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	6	106553637	106553637	C	A	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	silent	c.1602	p.T534	1.000	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	33	0	0	24	9	27.27	-	-	-	A	106553637	C	A	106553637	2	1	168	1	0	0	0	0	0	0	0	1	12531	668	24	4		4	PRDM1	6	106553637	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	15892794	106553637	64561430	53	10123										
AEBP1	0	genome.wustl.edu	37	chr7	44152266	44152266	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	atcctacccctacgatatggCccgcacgcctacccaggagc	8	18	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	7	44152266	44152266	C	G	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.2327	p.A776G	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	27	0	0	4	9	69.23	-	-	-	G	44152266	C	G	44152266	3	3	168	1	0	0	0	0	1	0	0	0	349	739	26	4	2397	4	AEBP1	7	44152266	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		44152266	114986397	54	10124										
AKAP9	0	genome.wustl.edu	37	chr7	91709195	91709195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aatttcatcagaacctgaaaGaacaaatattcagaatttaa	4	6	3	4			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	7	91709195	91709195	G	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.7784	p.R2595T	0.011	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	49	0	0	32	113	77.93	-	-	-	C	91709195	G	C	91709195	3	2	168	1	0	0	0	0	1	0	0	0	459	942	33	2	7870	2	AKAP9	7	91709195	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	47556929	91709195	67429468	55	10125										
FLNC	0	genome.wustl.edu	37	chr7	128491632	128491632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agactacagcatcatcgtgcGcttcgatgacaagcacatcc	8	13	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	7	128491632	128491632	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.5792	p.R1931H	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	60	0	0	61	12	16.22	-	-	-	A	128491632	G	A	128491632	3	1	168	1	0	0	0	0	1	0	0	0	5981	1087	38	1	5930	1	FLNC	7	128491632	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	36782437	128491632	30647031	56	10126										
FAM115A	0	genome.wustl.edu	37	chr7	143573579	143573579	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aggacctggcccatgtcattCaccatcacaggaaatgaagc	9	12	3	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	7	143573579	143573579	C	A	SNP	FAM115A	ENST00000479870	human	ensembl	69_37n	-1	known	silent	c.123	p.V41	1.000	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420	121	1	0.82	39	9	18.75	-	-	-	A	143573579	C	A	143573579	2	1	168	1	0	0	0	0	0	0	0	1	5445	813	29	2		2	FAM115A	7	143573579	Silent	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	15081947	143573579	15565084	57	10127										
GIMAP7	0	genome.wustl.edu	37	chr7	150217141	150217141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggaaaagtgcaacagcgaacAccatccttggagaggaaatc	11	9	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	7	150217141	150217141	A	G	SNP	GIMAP7	ENST00000313543	human	ensembl	69_37n	1	known	missense	c.79	p.T27A	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP7	HGNC	ENSG00000179144	76	0	0	14	14	48.28	-	-	-	G	150217141	A	G	150217141	3	3	168	1	0	0	0	0	1	0	0	0	6436	159	6	5	81	5	GIMAP7	7	150217141	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	6643562	150217141	8921522	58	10128										
PREX2	0	genome.wustl.edu	37	chr8	68982088	68982088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agggtgtaagattatattgtCgtcttcatagcctttttact	8	6	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	68982088	68982088	C	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.1462	p.R488C	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	211	1	0.47	684	108	13.64	-	-	-	T	68982088	C	T	68982088	3	4	168	1	0	0	0	0	1	0	0	0	12558	884	31	1	1512	1	PREX2	8	68982088	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		68982088	77381934	59	10129										
ZFHX4	0	genome.wustl.edu	37	chr8	77617392	77617392	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ctacaaacctcataggacccGatccaaccttccgcggttta	6	15	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	77617392	77617392	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.1069	p.D357Y	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	226	0	0	294	112	27.59	-	-	-	T	77617392	G	T	77617392	3	4	168	1	0	0	0	0	1	0	0	0	17731	1058	37	3	1071	3	ZFHX4	8	77617392	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	8635304	77617392	68746630	60	10130										
PKHD1L1	0	genome.wustl.edu	37	chr8	110457322	110457322	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gccagggaaactgcacctttTcatacttagaaagcatcact	7	11	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	110457322	110457322	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.5224	p.S1742P	0.657	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	106	0	0	132	116	46.77	-	-	-	C	110457322	T	C	110457322	3	2	168	1	0	0	0	0	1	0	0	0	12046	1783	62	5	5374	5	PKHD1L1	8	110457322	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	32839930	110457322	35906700	61	10131										
FAM49B	0	genome.wustl.edu	37	chr8	130861491	130861491	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tataaaacaataacttacatCaattttggaagttttagcaa	4	5	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	130861491	130861491	C	G	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.838	p.D280H	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	106	0	0	64	82	56.16	-	-	-	G	130861491	C	G	130861491	3	3	168	1	0	0	0	0	1	0	0	0	5622	826	29	2	148	2	FAM49B	8	130861491	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	20404169	130861491	15502531	62	10132										
TRAPPC9	0	genome.wustl.edu	37	chr8	141285887	141285887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gatacattagtagatatttcAtcaccagaagaaggttgcaa	8	6	2	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	141285887	141285887	A	C	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.2442	p.D814E	0.989	pfam_TRAPP_II_complex_Trs120	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	211	0	0	105	42	28.57	-	-	-	C	141285887	A	C	141285887	3	2	168	1	0	0	0	0	1	0	0	0	16561	214	8	5	1334	5	TRAPPC9	8	141285887	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	10424396	141285887	5078135	63	10133										
FLJ43860	0	genome.wustl.edu	37	chr8	142489350	142489350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tccatctgatgggcctgctcCtgccaaactggtccaggacg	11	14	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	8	142489350	142489350	C	T	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.1052	p.R351K	0.548	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	47	0	0	13	6	31.58	-	-	-	T	142489350	C	T	142489350	3	4	168	1	0	0	0	0	1	0	0	0	5976	681	24	4	2992	4	FLJ43860	8	142489350	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	1203463	142489350	3874672	64	10134										
BNC2	0	genome.wustl.edu	37	chr9	16738360	16738360	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aaaaaaaaaccaacatacctCaatttgagatgtatcaaccc	3	10	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	9	16738360	16738360	C	A	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	nonsense	c.127	p.E43*	0.496	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	308	0	0	177	129	42.16	-	-	-	A	16738360	C	A	16738360	4	1	168	1	0	0	0	0	0	1	0	0	1480	835	29	2	3196	2	BNC2	9	16738360	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		16738360	124475071	65	10135										
COL15A1	0	genome.wustl.edu	37	chr9	101796852	101796852	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gagcaagagggcctaatggcTcagttggtgaaaaggtaaaa	14	5	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	9	101796852	101796852	T	G	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	missense	c.2065	p.S689A	0.966	pfam_Collagen	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	24	0	0	24	7	22.58	-	-	-	G	101796852	T	G	101796852	3	3	168	1	0	0	0	0	1	0	0	0	3702	1551	54	5	2131	5	COL15A1	9	101796852	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	85058492	101796852	39416579	66	10136										
CEL	0	genome.wustl.edu	37	chr9	135946377	135946377	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ctcttctcactctgcagggaCcccaacatgggcgactcggc	10	16	3	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	9	135946377	135946377	C	A	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	missense	c.1497	p.D499E	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	43	0	0	32	19	37.25	-	-	-	A	135946377	C	A	135946377	3	1	168	1	0	0	0	0	1	0	0	0	3238	506	18	4	1539	4	CEL	9	135946377	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	34149525	135946377	5267054	67	10137										
HERC4	0	genome.wustl.edu	37	chr10	69832857	69832857	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccaaaggatgcatttccccaGcacaacatgcttgtaattat	6	11	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	10	69832857	69832857	G	T	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	nonsense	c.9	p.C3*	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	88	0	0	88	43	32.82	-	-	-	T	69832857	G	T	69832857	4	4	168	1	0	0	0	0	0	1	0	0	7111	963	34	4	3260	4	HERC4	10	69832857	Nonsense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		69832857	65701890	68	10138										
PPP3CB	0	genome.wustl.edu	37	chr10	75230840	75230840	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttccttacttataaaaataaGaacatcctcgaactgtattg	4	8	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	10	75230840	75230840	G	A	SNP	PPP3CB	ENST00000394829	human	ensembl	69_37n	-1	known	missense	c.797	p.S266F	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758	100	0	0	66	47	41.59	-	-	-	A	75230840	G	A	75230840	3	1	168	1	0	0	0	0	1	0	0	0	12475	942	33	2	816	2	PPP3CB	10	75230840	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	5397983	75230840	60303907	69	10139										
IFIT1B	0	genome.wustl.edu	37	chr10	91143779	91143779	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aaggacaggaagctgaaggaGaaaagtacattgaagaagct	13	4	0	4			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	10	91143779	91143779	G	T	SNP	IFIT1B	ENST00000371809	human	ensembl	69_37n	1	known	nonsense	c.709	p.E237*	0.988	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1B	HGNC	ENSG00000204010	135	0	0	59	41	41	-	-	-	T	91143779	G	T	91143779	4	4	168	1	0	0	0	0	0	1	0	0	7576	943	33	2	715	2	IFIT1B	10	91143779	Nonsense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	15912939	91143779	44390968	70	10140										
RIC8A	0	genome.wustl.edu	37	chr11	209698	209698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cagcagaggcccgcctagtgGtgaagctcacagagcgtgtg	15	11	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	209698	209698	G	T	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	missense	c.424	p.V142L	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	44	0	0	33	15	31.25	-	-	-	T	209698	G	T	209698	3	4	168	1	0	0	0	0	1	0	0	0	13439	1261	44	4	434	4	RIC8A	11	209698	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		209698	134796818	71	10141										
HPS5	0	genome.wustl.edu	37	chr11	18313238	18313238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caggtcgttccgaagaccacTtgcaatggcgcatggagaac	12	11	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	18313238	18313238	T	C	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.2191	p.S731G	0.000	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	176	0	0	177	71	28.51	-	-	-	C	18313238	T	C	18313238	3	2	168	1	0	0	0	0	1	0	0	0	7393	1609	56	5	1230	5	HPS5	11	18313238	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	18103540	18313238	116693278	72	10142										
CKAP5	0	genome.wustl.edu	37	chr11	46811734	46811734	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gctttttcttcacatacttcTatctgtaagatacaaaaaca	3	9	4	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	46811734	46811734	T	C	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.1767	p.I589M	0.922	NULL	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	74	0	0	98	90	47.87	-	-	-	C	46811734	T	C	46811734	3	2	168	1	0	0	0	0	1	0	0	0	3475	1512	53	5	4451	5	CKAP5	11	46811734	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	28498496	46811734	88194782	73	10143										
OR5M10	0	genome.wustl.edu	37	chr11	56344871	56344871	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gcaaggaagtaaaactcagtGatcactagggcgatgaagag	13	6	2	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	56344871	56344871	G	T	SNP	OR5M10	ENST00000526812	human	ensembl	69_37n	-1	known	silent	c.327	p.I109	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834	266	0	0	151	145	48.99	-	-	-	T	56344871	G	T	56344871	2	4	168	1	0	0	0	0	0	0	0	1	11246	1280	45	2		2	OR5M10	11	56344871	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	9533137	56344871	78661645	74	10144										
OR4D10	0	genome.wustl.edu	37	chr11	59245434	59245434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccaatgttcttgacactttcTactgtgatgtccaccgggtc	8	12	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	59245434	59245434	T	C	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.532	p.Y178H	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	151	0	0	166	36	17.73	-	-	-	C	59245434	T	C	59245434	3	2	168	1	0	0	0	0	1	0	0	0	11127	1522	53	5	534	5	OR4D10	11	59245434	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	2900563	59245434	75761082	75	10145										
CCS	0	genome.wustl.edu	37	chr11	66367007	66367007	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tgcgcttcctacagctgaccCctgagcgctgcctcatcgag	10	16	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	66367007	66367007	C	G	SNP	CCS	ENST00000533244	human	ensembl	69_37n	1	known	missense	c.328	p.P110A	0.920	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom	pfam_SOD_Cu_Zn_dom,pfam_HeavyMe-assoc_HMA,superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_SOD_Cu_Zn_dom	-	no_errors	CCS	HGNC	ENSG00000173992	76	0	0	7	6	46.15	-	-	-	G	66367007	C	G	66367007	3	3	168	1	0	0	0	0	1	0	0	0	2981	623	22	4	342	4	CCS	11	66367007	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	7121573	66367007	68639509	76	10146										
RBM4B	0	genome.wustl.edu	37	chr11	66444335	66444335	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttggttgaagctttgctcttAttcttgctggcttccacgtt	9	9	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	66444335	66444335	A	T	SNP	RBM4B	ENST00000310046	human	ensembl	69_37n	-1	known	missense	c.216	p.N72K	1.000	pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914	127	0	0	217	129	37.28	-	-	-	T	66444335	A	T	66444335	3	4	168	1	0	0	0	0	1	0	0	0	13225	446	16	5	871	5	RBM4B	11	66444335	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	77328	66444335	68562181	77	10147										
FAT3	0	genome.wustl.edu	37	chr11	92592379	92592379	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cagttacatcaaatatcggcTttctgaaaatagcaaagaag	7	7	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	11	92592379	92592379	T	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.11549	p.L3850H	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	168	0	0	60	112	65.12	-	-	-	A	92592379	T	A	92592379	3	1	168	1	0	0	0	0	1	0	0	0	5737	1609	56	5	11627	5	FAT3	11	92592379	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	26148044	92592379	42414137	78	10148										
TULP3	0	genome.wustl.edu	37	chr12	3018748	3018748	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggctaagctggattatcaggTgagcagagtctcctcttttg	12	8	3	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	3018748	3018748	T	A	SNP	TULP3	ENST00000228245	human	ensembl	69_37n	1	known	splice_site	c.93+2	e2+2	0.998	-	-	-	no_errors	TULP3	HGNC	ENSG00000078246	165	0	0	351	51	12.2	-	-	-	A	3018748	T	A	3018748	5	1	168	1	0	0	0	0	0	0	1	0	16872	1710	59	5	101	5	TULP3	12	3018748	Splice_Site	SNP	T	TCGA-A8-A07C-01A-11D-A045-09		3018748	130833147	79	10149										
LPCAT3	0	genome.wustl.edu	37	chr12	7087665	7087665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggcccgtcaaaatgcatactCcttcctgagagggaatagct	10	11	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	7087665	7087665	C	T	SNP	LPCAT3	ENST00000261407	human	ensembl	69_37n	-1	known	missense	c.878	p.G293E	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684	81	0	0	74	110	59.78	-	-	-	T	7087665	C	T	7087665	3	4	168	1	0	0	0	0	1	0	0	0	8978	855	30	2	601	2	LPCAT3	12	7087665	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	4068917	7087665	126764230	80	10150										
PZP	0	genome.wustl.edu	37	chr12	9321484	9321484	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cctccatagtatccttgaccTactgctcctgcagacacgga	7	15	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	9321484	9321484	T	A	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	silent	c.2088	p.V696	0.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	279	0	0	346	45	11.51	-	-	-	A	9321484	T	A	9321484	2	1	168	1	0	0	0	0	0	0	0	1	12952	1509	53	5		5	PZP	12	9321484	Silent	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	2233819	9321484	124530411	81	10151										
MAP3K12	0	genome.wustl.edu	37	chr12	53876961	53876963	+	In_Frame_Del	DEL	GAG	GAG	-													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gggagcaaagactccgtcttGaggatatctggcctggaaga							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	53876961	53876963	GAG	-	DEL	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	in_frame_del	c.1527_1525	p.L509in_frame_del	1.000:1.000:1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	79	0	0	12	39	75	-	-	-	-	53876963	GAG	-	53876961	7	5	168	1	0	1	0	1	0	0	0	0	9317	1277	45	0	1068	0	MAP3K12	12	53876961	In_Frame_Del	DEL	GAG	TCGA-A8-A07C-01A-11D-A045-09	44555477	53876961	79974934	82	10152										
ZBTB39	0	genome.wustl.edu	37	chr12	57398550	57398550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggttctggaagtagccagctGcacaggccagcacagccttg	13	12	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	57398550	57398550	G	A	SNP	ZBTB39	ENST00000300101	human	ensembl	69_37n	-1	known	missense	c.152	p.A51V	0.991	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860	156	0	0	30	37	55.22	-	-	-	A	57398550	G	A	57398550	3	1	168	1	0	0	0	0	1	0	0	0	17636	1319	46	4	1990	4	ZBTB39	12	57398550	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	3521589	57398550	76453345	83	10153										
LGR5	0	genome.wustl.edu	37	chr12	71978445	71978445	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gacctgcctcccagttccgtGccatcaccagcttatccagt	7	17	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	71978445	71978445	G	C	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	silent	c.2655	p.V885	0.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	138	0	0	54	61	53.04	-	-	-	C	71978445	G	C	71978445	2	2	168	1	0	0	0	0	0	0	0	1	8812	1306	46	4		4	LGR5	12	71978445	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	14579895	71978445	61873450	84	10154										
ANKS1B	0	genome.wustl.edu	37	chr12	99192725	99192725	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gacttacccgcatttttgcaCaagcatcttgggttgattct	8	10	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	99192725	99192725	C	G	SNP	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	missense	c.3254	p.C1085S	1.000	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	462	0	0	195	27	12.16	-	-	-	G	99192725	C	G	99192725	3	3	168	1	0	0	0	0	1	0	0	0	688	478	17	4	631	4	ANKS1B	12	99192725	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	27214280	99192725	34659170	85	10155										
OAS1	0	genome.wustl.edu	37	chr12	113346375	113346375	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caagggcaccaccctcagagGccgatctgacgctgacctgg	12	15	2	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	12	113346375	113346375	G	C	SNP	OAS1	ENST00000445409	human	ensembl	69_37n	1	known	missense	c.215	p.G72A	0.147	pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127	202	0	0	133	66	33.17	-	-	-	C	113346375	G	C	113346375	3	2	168	1	0	0	0	0	1	0	0	0	10872	1203	42	4	221	4	OAS1	12	113346375	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	14153650	113346375	20505520	86	10156										
SPG20	0	genome.wustl.edu	37	chr13	36886599	36886599	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttccaacgcaatttgctacaGtgcaaactccatcaactaat	4	12	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	13	36886599	36886599	G	C	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.1499	p.T500S	0.909	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	146	0	0	116	29	20	-	-	-	C	36886599	G	C	36886599	3	2	168	1	0	0	0	0	1	0	0	0	15133	1029	36	4	513	4	SPG20	13	36886599	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		36886599	78283279	87	10157										
EDNRB	0	genome.wustl.edu	37	chr13	78492256	78492256	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttgatagggatgtcaatgacGatgtgcagcaggtctcccag	13	8	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	13	78492256	78492256	G	A	SNP	EDNRB	ENST00000334286	human	ensembl	69_37n	-1	known	silent	c.453	p.I151	0.875	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ETB_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Bombsn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	EDNRB	HGNC	ENSG00000136160	79	0	0	78	13	14.29	-	-	-	A	78492256	G	A	78492256	2	1	168	1	0	0	0	0	0	0	0	1	4955	1048	37	1		1	EDNRB	13	78492256	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	41605657	78492256	36677622	88	10158										
FRMD6	0	genome.wustl.edu	37	chr14	52171538	52171538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tcattctcagtgtgtgctccGagaggaggcctacttcctgc	11	12	2	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	14	52171538	52171538	G	T	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.443	p.R148L	0.997	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	110	0	0	14	20	58.82	-	-	-	T	52171538	G	T	52171538	3	4	168	1	0	0	0	0	1	0	0	0	6103	1058	37	3	437	3	FRMD6	14	52171538	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		52171538	55178002	89	10159										
ESR2	0	genome.wustl.edu	37	chr14	64746760	64746760	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gaccagactccatagtgataTcccgatgcgtaatcgctgca	9	12	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	14	64746760	64746760	T	G	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	silent	c.474	p.G158	0.985	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	97	0	0	39	36	48	-	-	-	G	64746760	T	G	64746760	2	3	168	1	0	0	0	0	0	0	0	1	5294	1422	50	5		5	ESR2	14	64746760	Silent	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	12575222	64746760	42602780	90	10160										
DISP2	0	genome.wustl.edu	37	chr15	40661498	40661498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tctgcgccagaccagctgcgCcacagccgtgggggctgcag	15	15	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	15	40661498	40661498	C	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	missense	c.3185	p.A1062V	1.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	14	0	0	14	20	58.82	-	-	-	T	40661498	C	T	40661498	3	4	168	1	0	0	0	0	1	0	0	0	4576	739	26	4	3215	4	DISP2	15	40661498	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		40661498	61869894	91	10161										
MYO5C	0	genome.wustl.edu	37	chr15	52553129	52553129	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caacgcttggttaattctctCcacaatgaagtcgaacaggt	8	10	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	15	52553129	52553129	C	A	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	nonsense	c.1243	p.E415*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	175	0	0	87	13	13	-	-	-	A	52553129	C	A	52553129	4	1	168	1	0	0	0	0	0	1	0	0	10152	864	30	2	4113	2	MYO5C	15	52553129	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	11891631	52553129	49978263	92	10162										
SLC5A11	0	genome.wustl.edu	37	chr16	24919344	24919344	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	atccctgtggtccaggccagCcagggcggccagctcttcat	12	15	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	16	24919344	24919344	C	A	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	missense	c.1326	p.S442R	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	41	0	0	71	15	17.24	-	-	-	A	24919344	C	A	24919344	3	1	168	1	0	0	0	0	1	0	0	0	14752	738	26	4	1372	4	SLC5A11	16	24919344	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		24919344	65435409	93	10163										
PSKH1	0	genome.wustl.edu	37	chr16	67942933	67942933	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggccaagtttgacccacgtgTtacagctaagtatgacatca	9	10	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	16	67942933	67942933	T	A	SNP	PSKH1	ENST00000291041	human	ensembl	69_37n	1	known	missense	c.281	p.V94D	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792	66	0	0	37	27	42.19	-	-	-	A	67942933	T	A	67942933	3	1	168	1	0	0	0	0	1	0	0	0	12744	1725	60	5	283	5	PSKH1	16	67942933	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	43023589	67942933	22411820	94	10164										
ENO3	0	genome.wustl.edu	37	chr17	4856110	4856110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gccgattccgagcagctgtgCccagtggggcttccacgggt	15	13	0	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	4856110	4856110	C	G	SNP	ENO3	ENST00000323997	human	ensembl	69_37n	1	known	missense	c.106	p.P36A	1.000	pfam_Enolase_N,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO3	HGNC	ENSG00000108515	188	1	0.53	58	16	21.62	-	-	-	G	4856110	C	G	4856110	3	3	168	1	0	0	0	0	1	0	0	0	5160	739	26	4	112	4	ENO3	17	4856110	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		4856110	76339100	95	10165										
TP53	0	genome.wustl.edu	37	chr17	7578213	7578214	+	Frame_Shift_Del	DEL	AA	AA	-													0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggcaccaccacactatgtcgAaaagtgtttctgtcatccaa							TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	7578213	7578214	AA	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.636_635	p.F212fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	452	0	0	67	100	58.48	-	-	-	-	7578214	AA	-	7578213	7	5	168	1	0	1	0	1	0	0	0	0	16477	243	9	0	658	0	TP53	17	7578213	Frame_Shift_Del	DEL	AA	TCGA-A8-A07C-01A-11D-A045-09	2722103	7578213	73616997	96	10166										
DNAH2	0	genome.wustl.edu	37	chr17	7663178	7663178	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttggcaaccacctcttttccAccatctctgtcttctgccac	4	17	4	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	7663178	7663178	A	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.2707	p.T903S	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	188	0	0	171	82	32.16	-	-	-	T	7663178	A	T	7663178	3	4	168	1	0	0	0	0	1	0	0	0	4638	159	6	5	2769	5	DNAH2	17	7663178	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	84965	7663178	73532032	97	10167										
HDAC5	0	genome.wustl.edu	37	chr17	42170479	42170479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccagcatttggggtgctgtgGgagggaatggttgaggccgc	19	7	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	42170479	42170479	G	A	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	missense	c.625	p.P209S	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	91	0	0	125	27	17.76	-	-	-	A	42170479	G	A	42170479	3	1	168	1	0	0	0	0	1	0	0	0	7061	1232	43	4	2834	4	HDAC5	17	42170479	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	34507301	42170479	39024731	98	10168										
FMNL1	0	genome.wustl.edu	37	chr17	43314958	43314958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ctggcggccgtgtgcttggtGcggggaggacatgacatcat	17	9	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	43314958	43314958	G	A	SNP	FMNL1	ENST00000328118	human	ensembl	69_37n	1	known	silent	c.846	p.V282	1.000	superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL1	HGNC	ENSG00000184922	123	0	0	27	90	76.92	-	-	-	A	43314958	G	A	43314958	2	1	168	1	0	0	0	0	0	0	0	1	5997	1306	46	4		4	FMNL1	17	43314958	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	1144479	43314958	37880252	99	10169										
MSI2	0	genome.wustl.edu	37	chr17	55674274	55674274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tgaagatgttgtggagaaagTctgtgagattcatttccatg	12	4	2	4			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	17	55674274	55674274	T	C	SNP	MSI2	ENST00000284073	human	ensembl	69_37n	1	known	missense	c.500	p.V167A	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI2	HGNC	ENSG00000153944	129	0	0	221	117	34.62	-	-	-	C	55674274	T	C	55674274	3	2	168	1	0	0	0	0	1	0	0	0	9948	1667	58	5	580	5	MSI2	17	55674274	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	12359316	55674274	25520936	100	10170										
CEP76	0	genome.wustl.edu	37	chr18	12678227	12678227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aagggatgttgtagctccagGagcacacacagatttaattg	11	7	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	18	12678227	12678227	G	A	SNP	CEP76	ENST00000262127	human	ensembl	69_37n	-1	known	missense	c.1504	p.P502S	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP76	HGNC	ENSG00000101624	186	0	0	141	125	46.99	-	-	-	A	12678227	G	A	12678227	3	1	168	1	0	0	0	0	1	0	0	0	3290	1174	41	2	487	2	CEP76	18	12678227	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		12678227	65399021	101	10171										
HDGFRP2	0	genome.wustl.edu	37	chr19	4496327	4496327	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	atcagcgaagaagccgcagtCctcaagcacagagcccgcca	10	15	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	4496327	4496327	C	A	SNP	HDGFRP2	ENST00000301284	human	ensembl	69_37n	1	known	missense	c.1253	p.S418Y	0.000	NULL	pfam_LEDGF,pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	CTB-50L17.10	Clone_based_vega_gene	ENSG00000167674	147	0	0	50	41	45.05	-	-	-	A	4496327	C	A	4496327	3	1	168	1	0	0	0	0	1	0	0	0	7071	855	30	2	1291	2	HDGFRP2	19	4496327	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09		4496327	54632656	102	10172										
CRB3	0	genome.wustl.edu	37	chr19	6465589	6465589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tgcaaatgagaatagcactgTtttgccttcatccaccagct	7	11	1	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	6465589	6465589	T	C	SNP	CRB3	ENST00000356762	human	ensembl	69_37n	1	known	missense	c.116	p.V39A	0.000	NULL	NULL	-	no_errors	CRB3	HGNC	ENSG00000130545	93	0	0	145	81	35.84	-	-	-	C	6465589	T	C	6465589	3	2	168	1	0	0	0	0	1	0	0	0	3880	1725	60	5	122	5	CRB3	19	6465589	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	1969262	6465589	52663394	103	10173										
MCOLN1	0	genome.wustl.edu	37	chr19	7593049	7593049	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	aactggcccccacagatcacGtttgacaacaaagcacacag	7	14	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	7593049	7593049	G	A	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	silent	c.783	p.T261	0.297	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	92	0	0	45	25	35.71	-	-	-	A	7593049	G	A	7593049	2	1	168	1	0	0	0	0	0	0	0	1	9466	1132	40	1		1	MCOLN1	19	7593049	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	1127460	7593049	51535934	104	10174										
ZNF69	0	genome.wustl.edu	37	chr19	12015904	12015904	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttgtgggaaagccttccattGtctcagtttatatcttatcc	7	9	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	12015904	12015904	G	A	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	1	known	missense	c.692	p.C231Y	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	117	0	0	155	88	36.07	-	-	-	A	12015904	G	A	12015904	3	1	168	1	0	0	0	0	1	0	0	0	18191	1392	48	4		4	ZNF69	19	12015904	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	4422855	12015904	47113079	105	10175										
ARRDC2	0	genome.wustl.edu	37	chr19	18120412	18120412	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	caccgacaggcacctcaagcGggggctcgggaaaaggttgc	15	12	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	18120412	18120412	G	C	SNP	ARRDC2	ENST00000222250	human	ensembl	69_37n	1	known	silent	c.501	p.A167	0.233	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643	38	0	0	21	12	36.36	-	-	-	C	18120412	G	C	18120412	2	2	168	1	0	0	0	0	0	0	0	1	987	1103	39	3		3	ARRDC2	19	18120412	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	6104508	18120412	41008571	106	10176										
GPATCH1	0	genome.wustl.edu	37	chr19	33585132	33585132	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggttggaaagaaggacaaggAgttggtcctcgagtaaagag	16	4	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	33585132	33585132	A	G	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	silent	c.510	p.G170	1.000	pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	139	0	0	171	76	30.77	-	-	-	G	33585132	A	G	33585132	2	3	168	1	0	0	0	0	0	0	0	1	6640	291	11	5		5	GPATCH1	19	33585132	Silent	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	15464720	33585132	25543851	107	10177										
HKR1	0	genome.wustl.edu	37	chr19	37853955	37853955	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	acatttgcagggagtgtgagCaaggctttagccagaagtca	13	7	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	37853955	37853955	C	T	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	nonsense	c.1258	p.Q420*	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	89	0	0	119	62	34.07	-	-	-	T	37853955	C	T	37853955	4	4	168	1	0	0	0	0	0	1	0	0	7245	711	25	4	1272	4	HKR1	19	37853955	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	4268823	37853955	21275028	108	10178										
CADM4	0	genome.wustl.edu	37	chr19	44130299	44130299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gcacatccagcacgtactgcGtctgcttgctgtgtccggag	12	13	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	44130299	44130299	G	A	SNP	CADM4	ENST00000222374	human	ensembl	69_37n	-1	known	missense	c.641	p.T214M	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM4	HGNC	ENSG00000105767	59	0	0	66	27	29.03	-	-	-	A	44130299	G	A	44130299	3	1	168	1	0	0	0	0	1	0	0	0	2594	1145	40	1	545	1	CADM4	19	44130299	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	6276344	44130299	14998684	109	10179										
ZNF283	0	genome.wustl.edu	37	chr19	44351903	44351903	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gtaaaatatgtggaaaggctTtttgttggggctatcaactt	11	4	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	44351903	44351903	T	A	SNP	ZNF283	ENST00000324461	human	ensembl	69_37n	1	known	missense	c.1150	p.F384I	0.952	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637	111	0	0	203	55	21.24	-	-	-	A	44351903	T	A	44351903	3	1	168	1	0	0	0	0	1	0	0	0	17916	1841	64	5	1164	5	ZNF283	19	44351903	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	221604	44351903	14777080	110	10180										
ZNF233	0	genome.wustl.edu	37	chr19	44777622	44777622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tggaaaaggcttaagtgttgGctctaatcttgaacttcacc	9	8	3	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	44777622	44777622	G	A	SNP	ZNF233	ENST00000391958	human	ensembl	69_37n	1	known	missense	c.809	p.G270D	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915	81	0	0	72	32	30.48	-	-	-	A	44777622	G	A	44777622	3	1	168	1	0	0	0	0	1	0	0	0	17882	1203	42	4	823	4	ZNF233	19	44777622	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	425719	44777622	14351361	111	10181										
RPL18	0	genome.wustl.edu	37	chr19	49119404	49119404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggtcgaaagtgaggatcttgCcccctgccctgaggatgcgg	15	11	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	19	49119404	49119404	C	A	SNP	RPL18	ENST00000549920	human	ensembl	69_37n	-1	known	missense	c.353	p.G118V	1.000	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	RPL18	HGNC	ENSG00000063177	92	0	0	35	24	40.68	-	-	-	A	49119404	C	A	49119404	3	1	168	1	0	0	0	0	1	0	0	0	13650	739	26	4	225	4	RPL18	19	49119404	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	4341782	49119404	10009579	112	10182										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31948286	31948286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccacacaggtcagtggcagaGcgtttactgagctgcagaaa	12	10	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	20	31948286	31948286	G	A	SNP	CDK5RAP1	ENST00000427097	human	ensembl	69_37n	-1	putative	missense	c.560	p.A187V	1.000	pfam_TRAM_dom,pfscan_TRAM_dom	pfam_TRAM_dom,pfscan_TRAM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDK5RAP1	HGNC	ENSG00000101391	63	0	0	64	35	35.35	-	-	-	A	31948286	G	A	31948286	3	1	168	1	0	0	0	0	1	0	0	0	3174	958	34	4	217	4	CDK5RAP1	20	31948286	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09		31948286	31077234	113	10183										
PREX1	0	genome.wustl.edu	37	chr20	47251259	47251259	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cttaaaggagaaggtgacatTgtccagctctgacagcgtca	11	9	2	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	20	47251259	47251259	T	A	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.4222	p.N1408Y	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	135	0	0	69	21	23.33	-	-	-	A	47251259	T	A	47251259	3	1	168	1	0	0	0	0	1	0	0	0	12557	1812	63	5	789	5	PREX1	20	47251259	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	15302973	47251259	15774261	114	10184										
HUNK	0	genome.wustl.edu	37	chr21	33355870	33355870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ccaggacagcctctgctacaAgacccggctctaccagatag	9	15	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	21	33355870	33355870	A	G	SNP	HUNK	ENST00000270112	human	ensembl	69_37n	1	known	missense	c.1205	p.K402R	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	160	0	0	139	41	22.78	-	-	-	G	33355870	A	G	33355870	3	3	168	1	0	0	0	0	1	0	0	0	7512	72	3	5	1235	5	HUNK	21	33355870	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09		33355870	14774025	115	10185										
ETS2	0	genome.wustl.edu	37	chr21	40186899	40186899	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gggaacatctggagcaaatgAtcaaaggtaccagctgaacg	12	8	2	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	21	40186899	40186899	A	T	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.499	p.I167F	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	58	0	0	123	23	15.75	-	-	-	T	40186899	A	T	40186899	3	4	168	1	0	0	0	0	1	0	0	0	5313	333	12	5	513	5	ETS2	21	40186899	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	6831029	40186899	7942996	116	10186										
MX2	0	genome.wustl.edu	37	chr21	42748967	42748967	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agtgccaccacaaatgatgtTtcctccaaactggcaggggg	11	11	0	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	21	42748967	42748967	T	G	SNP	MX2	ENST00000330714	human	ensembl	69_37n	1	known	missense	c.134	p.F45C	0.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX2	HGNC	ENSG00000183486	108	0	0	37	9	19.57	-	-	-	G	42748967	T	G	42748967	3	3	168	1	0	0	0	0	1	0	0	0	10070	1841	64	5	136	5	MX2	21	42748967	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09	2562068	42748967	5380928	117	10187										
COL18A1	0	genome.wustl.edu	37	chr21	46888327	46888327	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cctcttcttccgtgacttctCactgctgttccacatccggc	6	17	3	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	21	46888327	46888327	C	A	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	nonsense	c.1523	p.S508*	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	45	0	0	53	19	26.39	-	-	-	A	46888327	C	A	46888327	4	1	168	1	0	0	0	0	0	1	0	0	3705	838	29	2	1643	2	COL18A1	21	46888327	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	4139360	46888327	1241568	118	10188										
MCM3AP	0	genome.wustl.edu	37	chr21	47663506	47663506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tggactggggagggactcttGctcttccacctacagtaggt	13	10	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	21	47663506	47663506	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	silent	c.5169	p.S1723	0.004	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	132	0	0	95	33	25.78	-	-	-	A	47663506	G	A	47663506	2	1	168	1	0	0	0	0	0	0	0	1	9459	1310	46	4		4	MCM3AP	21	47663506	Silent	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	775179	47663506	466389	119	10189										
MICAL3	0	genome.wustl.edu	37	chr22	18293576	18293576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ttcctcctccgtgtaggttcTtggctggagagaacaagaga	12	9	1	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	22	18293576	18293576	T	G	SNP	MICAL3	ENST00000577821	human	ensembl	69_37n	-1	novel	missense	c.329	p.K110T	1.000	NULL	pfam_DUF3585	-	no_start_codon:pseudogene:no_stop_codon	MICAL3	HGNC	ENSG00000243156	52	0	0	75	23	23.47	-	-	-	G	18293576	T	G	18293576	3	3	168	1	0	0	0	0	1	0	0	0	9642	1617	56	5	579	5	MICAL3	22	18293576	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09		18293576	33010990	120	10190										
XPNPEP3	0	genome.wustl.edu	37	chr22	41282335	41282335	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	agctgagacgaacatggtttGgtatgactggatgaggccct	14	7	0	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	22	41282335	41282335	G	C	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	missense	c.608	p.W203S	1.000	pfam_Aminopep_P_N	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	87	0	0	39	32	45.07	-	-	-	C	41282335	G	C	41282335	3	2	168	1	0	0	0	0	1	0	0	0	17541	1357	47	4	622	4	XPNPEP3	22	41282335	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	22988759	41282335	10022231	121	10191										
PNPLA3	0	genome.wustl.edu	37	chr22	44328855	44328855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tggggagtacgacatctgccCtaaagtcaagtccacgaact	10	11	2	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	22	44328855	44328855	C	T	SNP	PNPLA3	ENST00000216180	human	ensembl	69_37n	1	known	missense	c.584	p.P195L	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	120	0	0	133	16	10.74	-	-	-	T	44328855	C	T	44328855	3	4	168	1	0	0	0	0	1	0	0	0	12240	681	24	4	598	4	PNPLA3	22	44328855	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	3046520	44328855	6975711	122	10192										
EIF1AX	0	genome.wustl.edu	37	chrX	20148683	20148683	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tgtcatcaaactgaatttcaTcatcatctccaggaccaaat	4	11	6	1			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	20148683	20148683	T	G	SNP	EIF1AX	ENST00000379607	human	ensembl	69_37n	-1	known	missense	c.380	p.D127A	1.000	superfamily_NA-bd_OB-fold-like	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	-	no_errors	EIF1AX	HGNC	ENSG00000173674	121	0	0	144	94	39.5	-	-	-	G	20148683	T	G	20148683	3	3	168	1	0	0	0	0	1	0	0	0	5027	1435	50	5	62	5	EIF1AX	23	20148683	Missense_Mutation	SNP	T	TCGA-A8-A07C-01A-11D-A045-09		20148683	135121877	123	10193										
POLA1	0	genome.wustl.edu	37	chrX	24745162	24745162	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gaacagaaagatcaaaggacCttgttggcttgaagtaaaaa	10	5	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	24745162	24745162	C	A	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.1505	p.P502H	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	193	0	0	62	41	39.81	-	-	-	A	24745162	C	A	24745162	3	1	168	1	0	0	0	0	1	0	0	0	12261	681	24	4	1541	4	POLA1	23	24745162	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	4596479	24745162	130525398	124	10194										
PAGE1	0	genome.wustl.edu	37	chrX	49459343	49459343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tacatagatcattggtctacGccgatagattaatcttctta	6	8	4	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	49459343	49459343	G	A	SNP	PAGE1	ENST00000376150	human	ensembl	69_37n	-1	known	missense	c.31	p.R11C	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985	157	0	0	82	57	41.01	-	-	-	A	49459343	G	A	49459343	3	1	168	1	0	0	0	0	1	0	0	0	11462	1087	38	1	429	1	PAGE1	23	49459343	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	24714181	49459343	105811217	125	10195										
AKAP4	0	genome.wustl.edu	37	chrX	49957662	49957662	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	ggtggaaccaggacagtcttCttcacatgtatctttgccct	9	11	4	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	49957662	49957662	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1702	p.E568K	0.051	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	201	0	0	90	59	39.6	-	-	-	T	49957662	C	T	49957662	3	4	168	1	0	0	0	0	1	0	0	0	453	922	32	2	870	2	AKAP4	23	49957662	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	498319	49957662	105312898	126	10196										
NHSL2	0	genome.wustl.edu	37	chrX	71358701	71358701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	acaaagtcccacctctggttCctaaggaggctgctaccctc	8	15	1	0			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	71358701	71358701	C	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.1303	p.P435T	0.561	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	115	0	0	16	13	44.83	-	-	-	A	71358701	C	A	71358701	3	1	168	1	0	0	0	0	1	0	0	0	10484	855	30	2	1325	2	NHSL2	23	71358701	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	21401039	71358701	83911859	127	10197										
NAP1L2	0	genome.wustl.edu	37	chrX	72434297	72434297	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cctcttcttgactggattctGacagctccttgcggttctct	8	13	4	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	72434297	72434297	G	A	SNP	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	missense	c.32	p.S11L	0.199	NULL	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	33	0	0	9	17	65.38	-	-	-	A	72434297	G	A	72434297	3	1	168	1	0	0	0	0	1	0	0	0	10229	1294	45	2	1354	2	NAP1L2	23	72434297	Missense_Mutation	SNP	G	TCGA-A8-A07C-01A-11D-A045-09	1075596	72434297	82836263	128	10198										
ODZ1	0	genome.wustl.edu	37	chrX	123695609	123695609	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	cccacctgacacacacagtgCcaaccattttgatccagggt	7	15	0	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	123695609	123695609	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	nonsense	c.2346	p.W782*	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	407	2	0.49	80	70	46.67	-	-	-	T	123695609	C	T	123695609	4	4	168	1	0	0	0	0	0	1	0	0	10907	740	26	4	5928	4	ODZ1	23	123695609	Nonsense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	51261312	123695609	31574951	129	10199										
FRMD7	0	genome.wustl.edu	37	chrX	131212279	131212279	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	tgtctgattggctctgggacCttttaggggtttgctcttga	13	7	3	2			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	131212279	131212279	C	A	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	missense	c.1766	p.R589M	1.000	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	155	0	0	60	62	50.82	-	-	-	A	131212279	C	A	131212279	3	1	168	1	0	0	0	0	1	0	0	0	6104	681	24	4	382	4	FRMD7	23	131212279	Missense_Mutation	SNP	C	TCGA-A8-A07C-01A-11D-A045-09	7516670	131212279	24058281	130	10200										
SAGE1	0	genome.wustl.edu	37	chrX	134995008	134995008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	8	0.904872247913239	0.939339670294347	1.55705760565096	0.565457762052189	0.68801848668367	1	0	gagaaggcgcttaaagaaatAgattcccactgccatctcag	9	10	1	3			TCGA-A8-A07C-01A-11D-A045-09	TCGA-A8-A07C-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ab33f67-b69d-4a2d-a424-841f5fbf1ee7	63565009-d197-4c5b-9dec-e8de2e4daece	X	134995008	134995008	A	G	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.2667	p.I889M	0.006	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	59	0	0	36	42	53.85	-	-	-	G	134995008	A	G	134995008	3	3	168	1	0	0	0	0	1	0	0	0	13895	410	15	5	2741	5	SAGE1	23	134995008	Missense_Mutation	SNP	A	TCGA-A8-A07C-01A-11D-A045-09	3782729	134995008	20275552	131	10201										
PRAMEF4	0	genome.wustl.edu	37	chr1	12941807	12941807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tctgctctggggaaacgtagCgagagacatccatgtgggag	15	8	2	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	12941807	12941807	C	T	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.743	p.R248H	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	17	0	0	52	17	24.64	-	-	-	T	12941807	C	T	12941807	3	4	169	1	0	0	0	0	1	0	0	0	12517	768	27	1	701	1	PRAMEF4	1	12941807	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09		12941807	236308814	1	10202										
PQLC2	0	genome.wustl.edu	37	chr1	19655106	19655106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gtacaggcgcagcaccgccgCctcggagcttgagcccctcc	12	18	0	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	19655106	19655106	C	T	SNP	PQLC2	ENST00000375153	human	ensembl	69_37n	1	known	missense	c.845	p.A282V	0.010	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487	28	0	0	25	8	24.24	-	-	-	T	19655106	C	T	19655106	3	4	169	1	0	0	0	0	1	0	0	0	12496	739	26	4	871	4	PQLC2	1	19655106	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	6713299	19655106	229595515	2	10203										
TXNDC12	0	genome.wustl.edu	37	chr1	52494264	52494264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	acttacctttgcaagctccaCaccaggatttatgaataatc	5	11	0	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	52494264	52494264	C	T	SNP	TXNDC12	ENST00000371626	human	ensembl	69_37n	-1	known	missense	c.197	p.C66Y	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC12	HGNC	ENSG00000117862	90	0	0	108	20	15.62	-	-	-	T	52494264	C	T	52494264	3	4	169	1	0	0	0	0	1	0	0	0	16890	478	17	4	341	4	TXNDC12	1	52494264	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	32839158	52494264	196756357	3	10204										
KLHL20	0	genome.wustl.edu	37	chr1	173703348	173703349	+	Frame_Shift_Del	DEL	CG	CG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cttctaactgcctgggcattCgggcttttgctgacacacat							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	173703348	173703349	CG	-	DEL	KLHL20	ENST00000209884	human	ensembl	69_37n	1	known	frame_shift_del	c.520_521	p.R174fs	1.000:1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321	98	0	0	173	77	30.8	-	-	-	-	173703349	CG	-	173703348	7	5	169	1	0	1	0	1	0	0	0	0	8428	875	31	0	526	0	KLHL20	1	173703348	Frame_Shift_Del	DEL	CG	TCGA-A8-A07E-01A-11W-A050-09	121209084	173703348	75547273	4	10205										
CTSE	0	genome.wustl.edu	37	chr1	206319212	206319212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctgtgtactgcactagcccaGcctgcagtaagtggggccag	13	12	0	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	206319212	206319212	G	A	SNP	CTSE	ENST00000361052	human	ensembl	69_37n	1	known	missense	c.337	p.A113T	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSE	HGNC	ENSG00000196188	74	0	0	82	79	48.77	-	-	-	A	206319212	G	A	206319212	3	1	169	1	0	0	0	0	1	0	0	0	4065	971	34	4	347	4	CTSE	1	206319212	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	32615864	206319212	42931409	5	10206										
LAMB3	0	genome.wustl.edu	37	chr1	209790889	209790889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gtcacccagctgcttggtcaTgcttgtcaccagcttttctg	9	13	4	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	209790889	209790889	T	A	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.3094	p.M1032L	0.912	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	96	0	0	169	36	17.48	-	-	-	A	209790889	T	A	209790889	3	1	169	1	0	0	0	0	1	0	0	0	8666	1464	51	5	436	5	LAMB3	1	209790889	Missense_Mutation	SNP	T	TCGA-A8-A07E-01A-11W-A050-09	3471677	209790889	39459732	6	10207										
NEK2	0	genome.wustl.edu	37	chr1	211848787	211848787	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	aggagcctgtgccaatggtgTacaacacttcatagtcctca	9	11	2	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	1	211848787	211848787	T	C	SNP	NEK2	ENST00000366999	human	ensembl	69_37n	-1	known	missense	c.35	p.Y12C	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK2	HGNC	ENSG00000117650	45	0	0	91	16	14.95	-	-	-	C	211848787	T	C	211848787	3	2	169	1	0	0	0	0	1	0	0	0	10396	1638	57	5	1334	5	NEK2	1	211848787	Missense_Mutation	SNP	T	TCGA-A8-A07E-01A-11W-A050-09	2057898	211848787	37401834	7	10208										
TTC32	0	genome.wustl.edu	37	chr2	20101597	20101597	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tgttagggttgcgtggctttCttgccgctgtccttccatag	12	10	1	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	20101597	20101597	C	T	SNP	TTC32	ENST00000333610	human	ensembl	69_37n	-1	known	missense	c.19	p.E7K	0.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC32	HGNC	ENSG00000183891	74	0	0	82	35	29.91	-	-	-	T	20101597	C	T	20101597	3	4	169	1	0	0	0	0	1	0	0	0	16798	922	32	2	448	2	TTC32	2	20101597	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09		20101597	223097776	8	10209										
SLC4A5	0	genome.wustl.edu	37	chr2	74452069	74452069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttgtcaatccaggccaggtcGtgctgggaaaagatgaaatc	12	8	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	74452069	74452069	G	T	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.3192	p.H1064Q	0.986	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	188	0	0	234	90	27.78	-	-	-	T	74452069	G	T	74452069	3	4	169	1	0	0	0	0	1	0	0	0	14746	1136	40	3	233	3	SLC4A5	2	74452069	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	54350472	74452069	168747304	9	10210										
NCK2	0	genome.wustl.edu	37	chr2	106471553	106471553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttattgtgatagccaagtggGactacaccgcccagcaggac	11	11	0	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	106471553	106471553	G	T	SNP	NCK2	ENST00000233154	human	ensembl	69_37n	1	known	missense	c.34	p.D12Y	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051	176	0	0	163	52	24.07	-	-	-	T	106471553	G	T	106471553	3	4	169	1	0	0	0	0	1	0	0	0	10292	1174	41	2	36	2	NCK2	2	106471553	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	32019484	106471553	136727820	10	10211										
ABCB6	0	genome.wustl.edu	37	chr2	220082498	220082499	+	Frame_Shift_Ins	INS	-	-	T													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	aaacagccctccagagaccaINScataccgcagcacccacagg							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	220082498	220082499	-	T	INS	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	frame_shift_ins	c.581_580	p.V194fs	0.982:0.957	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	131	0	0	179	377	67.81	-	-	-	T	220082499	-	T	220082498	7	5	169	1	0	1	1	0	0	0	0	0	45	159	6	0	2019	0	ABCB6	2	220082498	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09	113610945	220082498	23116875	11	10212										
ARMC9	0	genome.wustl.edu	37	chr2	232123800	232123800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cgcttgaaagccttcttgttGcaggctctgcgctgggtagg	14	10	2	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	232123800	232123800	G	A	SNP	ARMC9	ENST00000424740	human	ensembl	69_37n	1	novel	missense	c.119	p.C40Y	1.000	NULL	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon	ARMC9	HGNC	ENSG00000135931	175	0	0	242	62	20.39	-	-	-	A	232123800	G	A	232123800	3	1	169	1	0	0	0	0	1	0	0	0	962	1310	46	4	1049	4	ARMC9	2	232123800	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	12041302	232123800	11075573	12	10213										
FARP2	0	genome.wustl.edu	37	chr2	242402858	242402859	+	Frame_Shift_Ins	INS	-	-	T													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ccacagaggcttcctgcgcgINSaggtggagcagaggctggca							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	2	242402858	242402859	-	T	INS	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	frame_shift_ins	c.1786_1787	p.E596fs	0.995:1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	55	0	0	98	185	65.37	-	-	-	T	242402859	-	T	242402858	7	5	169	1	0	1	1	0	0	0	0	0	5723	1059	37	0	1844	0	FARP2	2	242402858	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09	10279058	242402858	796515	13	10214										
ANKRD28	0	genome.wustl.edu	37	chr3	15751224	15751225	+	Frame_Shift_Del	DEL	GG	GG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tgcaccagtattcagcagaaGgtttaggcactccaaattcc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	3	15751224	15751225	GG	-	DEL	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	frame_shift_del	c.1366_1365	p.L456fs	1.000:1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	120	0	0	151	32	17.11	-	-	-	-	15751225	GG	-	15751224	7	5	169	1	0	1	0	1	0	0	0	0	656	1000	35	0	1958	0	ANKRD28	3	15751224	Frame_Shift_Del	DEL	GG	TCGA-A8-A07E-01A-11W-A050-09		15751224	182271206	14	10215										
CCR5	0	genome.wustl.edu	37	chr3	46415073	46415075	+	In_Frame_Del	DEL	AGA	AGA	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tctgcttcggtgtcgaaatgAgaagaagaggcacagggctg							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	3	46415073	46415075	AGA	-	DEL	CCR5	ENST00000292303	human	ensembl	69_37n	1	known	in_frame_del	c.680_682	p.K229in_frame_del	0.263:0.285:0.696	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791	83	0	0	137	40	22.6	-	-	-	-	46415075	AGA	-	46415073	7	5	169	1	0	1	0	1	0	0	0	0	2973	304	11	0	682	0	CCR5	3	46415073	In_Frame_Del	DEL	AGA	TCGA-A8-A07E-01A-11W-A050-09	30663849	46415073	151607357	15	10216										
STAB1	0	genome.wustl.edu	37	chr3	52543929	52543930	+	Frame_Shift_Ins	INS	-	-	G													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gcgacaaccgcccaggcagtINSgggggggtgtgccagcaggg							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	3	52543929	52543930	-	G	INS	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	frame_shift_ins	c.2391_2392	p.V799fs	0.997:0.999	smart_EGF-like	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	11	0	0	8	2	20	-	-	-	G	52543930	-	G	52543929	7	5	169	1	0	1	1	0	0	0	0	0	15328	1693	59	0	2481	0	STAB1	3	52543929	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09	6128856	52543929	145478501	16	10217										
IFT122	0	genome.wustl.edu	37	chr3	129180117	129180117	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cctacaatcctattactcatCaactggcatcttgttcctcc	3	15	3	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	3	129180117	129180117	C	T	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	nonsense	c.472	p.Q158*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	135	0	0	192	33	14.6	-	-	-	T	129180117	C	T	129180117	4	4	169	1	0	0	0	0	0	1	0	0	7609	827	29	2	494	2	IFT122	3	129180117	Nonsense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	76636188	129180117	68842313	17	10218										
TOPBP1	0	genome.wustl.edu	37	chr3	133327397	133327397	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	acctgcatgagataatcagcAatgtattctgttctcaagca	7	9	3	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	3	133327397	133327397	A	G	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	silent	c.4407	p.I1469	0.986	superfamily_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	79	0	0	84	14	14.29	-	-	-	G	133327397	A	G	133327397	2	3	169	1	0	0	0	0	0	0	0	1	16465	126	5	5		5	TOPBP1	3	133327397	Silent	SNP	A	TCGA-A8-A07E-01A-11W-A050-09	4147280	133327397	64695033	18	10219										
OTUD4	0	genome.wustl.edu	37	chr4	146076763	146076763	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttcatattccacatttctatAgactgcaggattgagtgact	7	8	2	3			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	4	146076763	146076763	A	G	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.766	p.Y256H	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	88	0	0	70	40	36.36	-	-	-	G	146076763	A	G	146076763	3	3	169	1	0	0	0	0	1	0	0	0	11387	420	15	5	2630	5	OTUD4	4	146076763	Missense_Mutation	SNP	A	TCGA-A8-A07E-01A-11W-A050-09		146076763	45077513	19	10220										
CYFIP2	0	genome.wustl.edu	37	chr5	156747679	156747679	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ccagcgtcctacaggcaattCgaaagaccatctgtgactgg	10	12	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	5	156747679	156747679	C	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.1540	p.R514G	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	52	0	0	52	14	21.21	-	-	-	G	156747679	C	G	156747679	3	3	169	1	0	0	0	0	1	0	0	0	4169	876	31	3	1594	3	CYFIP2	5	156747679	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09		156747679	24167581	20	10221										
GPRIN1	0	genome.wustl.edu	37	chr5	176026586	176026589	+	Frame_Shift_Del	DEL	AGCA	AGCA	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gctccctctggggccgtcagAgcaggaggccccttccccag							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	AGCA	AGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	5	176026586	176026589	AGCA	-	DEL	GPRIN1	ENST00000303991	human	ensembl	69_37n	-1	known	frame_shift_del	c.250_247	p.C83fs	0.030:0.015:0.012:0.139	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	23	0	0	16	43	68.25	-	-	-	-	176026589	AGCA	-	176026586	7	5	169	1	0	1	0	1	0	0	0	0	6780	304	11	0	2780	0	GPRIN1	5	176026586	Frame_Shift_Del	DEL	AGCA	TCGA-A8-A07E-01A-11W-A050-09	19278907	176026586	4888674	21	10222										
MDN1	0	genome.wustl.edu	37	chr6	90418279	90418279	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gtccgtttgtgggtcaaagtCcatcaaatttctaatcatgt	8	8	4	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	6	90418279	90418279	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.7834	p.D2612H	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	277	0	0	279	89	24.12	-	-	-	G	90418279	C	G	90418279	3	3	169	1	0	0	0	0	1	0	0	0	9486	855	30	2	9164	2	MDN1	6	90418279	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09		90418279	80696788	22	10223										
RSPH4A	0	genome.wustl.edu	37	chr6	116937994	116937994	+	Frame_Shift_Del	DEL	C	C	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cgcagtctagagccaagacgCctctgggtggccccgcggga							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	6	116937994	116937994	C	-	DEL	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	frame_shift_del	c.208	p.P70fs	0.000	NULL	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	70	0	0	135	66	32.67	-	-	-	-	116937994	C	-	116937994	7	5	169	1	0	1	0	1	0	0	0	0	13792	739	26	0	210	0	RSPH4A	6	116937994	Frame_Shift_Del	DEL	C	TCGA-A8-A07E-01A-11W-A050-09	26519715	116937994	54177073	23	10224										
RHBDD2	0	genome.wustl.edu	37	chr7	75513141	75513141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	acgtctcagggtcttcagccGagaggagggcagcccagagc	15	12	3	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	7	75513141	75513141	G	A	SNP	RHBDD2	ENST00000006777	human	ensembl	69_37n	1	known	missense	c.712	p.E238K	0.993	NULL	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD2	HGNC	ENSG00000005486	46	0	0	89	24	21.24	-	-	-	A	75513141	G	A	75513141	3	1	169	1	0	0	0	0	1	0	0	0	13401	1059	37	1	722	1	RHBDD2	7	75513141	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09		75513141	83625522	24	10225										
SPDYE3	0	genome.wustl.edu	37	chr7	99912241	99912241	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	atgaatctgatgatgagccaGagaaggagctcgcccctgag	13	9	1	6			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	7	99912241	99912241	G	A	SNP	SPDYE3	ENST00000332397	human	ensembl	69_37n	1	known	missense	c.1069	p.E357K	0.061	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300	382	0	0	395	155	28.18	-	-	-	A	99912241	G	A	99912241	3	1	169	1	0	0	0	0	1	0	0	0	15123	943	33	2	1091	2	SPDYE3	7	99912241	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	24399100	99912241	59226422	25	10226										
MLL3	0	genome.wustl.edu	37	chr7	151960160	151960160	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tggttgaagacaaaaagtatGataccctttgtcacacgtat	8	7	1	3			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	7	151960160	151960160	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.1240	p.H414Y	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	184	0	0	215	39	15.35	-	-	-	A	151960160	G	A	151960160	3	1	169	1	0	0	0	0	1	0	0	0	9693	1290	45	2	13699	2	MLL3	7	151960160	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	52047919	151960160	7178503	26	10227										
TLN1	0	genome.wustl.edu	37	chr9	35706019	35706019	+	Frame_Shift_Del	DEL	T	T	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	acgaccccagcagcactggcTgcctcgttgagggttgttgt							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	9	35706019	35706019	T	-	DEL	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	frame_shift_del	c.5451	p.A1818fs	0.886	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	127	0	0	191	179	47.86	-	-	-	-	35706019	T	-	35706019	7	5	169	1	0	1	0	1	0	0	0	0	16042	1567	55	0	2242	0	TLN1	9	35706019	Frame_Shift_Del	DEL	T	TCGA-A8-A07E-01A-11W-A050-09		35706019	105507412	27	10228										
XPA	0	genome.wustl.edu	37	chr9	100449457	100449457	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	caataaatttaagaggtggcTctcttttttctaaatcacag	6	7	3	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	9	100449457	100449457	T	G	SNP	XPA	ENST00000375128	human	ensembl	69_37n	-1	known	missense	c.476	p.E159A	1.000	pfam_XPA_C,superfamily_DNA-bd_dom_put,tigrfam_XPA	pfam_XPA_C,pfam_Znf_XPA_CS,superfamily_DNA-bd_dom_put,tigrfam_XPA	-	no_errors	XPA	HGNC	ENSG00000136936	129	0	0	198	22	10	-	-	-	G	100449457	T	G	100449457	3	3	169	1	0	0	0	0	1	0	0	0	17537	1551	54	5	357	5	XPA	9	100449457	Missense_Mutation	SNP	T	TCGA-A8-A07E-01A-11W-A050-09	64743438	100449457	40763974	28	10229										
GLE1	0	genome.wustl.edu	37	chr9	131296055	131296057	+	In_Frame_Del	DEL	GAA	GAA	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctcagaaacaaggcgaggagGaagtggcctctcaccatgaa							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	9	131296055	131296057	GAA	-	DEL	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	in_frame_del	c.1471_1473	p.E491in_frame_del	1.000:0.995:1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	68	0	0	93	22	19.13	-	-	-	-	131296057	GAA	-	131296055	7	5	169	1	0	1	0	1	0	0	0	0	6487	1175	41	0	1513	0	GLE1	9	131296055	In_Frame_Del	DEL	GAA	TCGA-A8-A07E-01A-11W-A050-09	30846598	131296055	9917376	29	10230	84	2								
GLE1	0	genome.wustl.edu	37	chr9	131296060	131296063	+	Frame_Shift_Del	DEL	GGCC	GGCC	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	aaacaaggcgaggaggaagtGgcctctcaccatgaagcagc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	GGCC	GGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	9	131296060	131296063	GGCC	-	DEL	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	frame_shift_del	c.1476_1479	p.A493fs	1.000:1.000:0.997:1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	68	0	0	88	22	19.3	-	-	-	-	131296063	GGCC	-	131296060	7	5	169	1	0	1	0	1	0	0	0	0	6487	1335	47	0	1518	0	GLE1	9	131296060	Frame_Shift_Del	DEL	GGCC	TCGA-A8-A07E-01A-11W-A050-09	5	131296060	9917371	30	10231	84	2								
CACNB2	0	genome.wustl.edu	37	chr10	18787302	18787302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	agacaaagcccgttgcatttGcggttcggacaaatgtcagc	11	10	1	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	10	18787302	18787302	G	A	SNP	CACNB2	ENST00000324631	human	ensembl	69_37n	1	known	missense	c.352	p.A118T	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	102	0	0	251	38	13.15	-	-	-	A	18787302	G	A	18787302	3	1	169	1	0	0	0	0	1	0	0	0	2578	1319	46	4	586	4	CACNB2	10	18787302	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09		18787302	116747445	31	10232										
RBP3	0	genome.wustl.edu	37	chr10	48388061	48388064	+	Frame_Shift_Del	DEL	CGTG	CGTG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttcccggccgtctgcagcacCgtgggcaccttggcacgcag							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	CGTG	CGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	10	48388061	48388064	CGTG	-	DEL	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	frame_shift_del	c.2817_2814	p.T939fs	0.002:0.995:0.997:1.000	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	19	0	0	10	63	82.89	-	-	-	-	48388064	CGTG	-	48388061	7	5	169	1	0	1	0	1	0	0	0	0	13240	639	23	0	942	0	RBP3	10	48388061	Frame_Shift_Del	DEL	CGTG	TCGA-A8-A07E-01A-11W-A050-09	29600759	48388061	87146686	32	10233	85	2								
RBP3	0	genome.wustl.edu	37	chr10	48388069	48388069	+	Frame_Shift_Del	DEL	C	C	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cgtctgcagcaccgtgggcaCcttggcacgcagagccacta							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	10	48388069	48388069	C	-	DEL	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	frame_shift_del	c.2809	p.V937fs	1.000	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	18	0	0	6	63	91.3	-	-	-	-	48388069	C	-	48388069	7	5	169	1	0	1	0	1	0	0	0	0	13240	507	18	0	950	0	RBP3	10	48388069	Frame_Shift_Del	DEL	C	TCGA-A8-A07E-01A-11W-A050-09	8	48388069	87146678	33	10234	85	2								
NRAP	0	genome.wustl.edu	37	chr10	115385844	115385845	+	Frame_Shift_Ins	INS	-	-	C													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctcttcttggcgtgctccatINSctgggagctgtcggtcacgc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	10	115385844	115385845	-	C	INS	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2230_2229	p.M743fs	1.000:1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	161	0	0	567	1352	70.45	-	-	-	C	115385845	-	C	115385844	7	5	169	1	0	1	1	0	0	0	0	0	10711	1435	50	0	3074	0	NRAP	10	115385844	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09	66997775	115385844	20148903	34	10235										
DNHD1	0	genome.wustl.edu	37	chr11	6566572	6566573	+	In_Frame_Ins	INS	-	-	GTG													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	atgctgcagggctgtgtggcINStgctcgccttgctcgaggcc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	11	6566572	6566573	-	GTG	INS	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	in_frame_ins	c.4403_4404	p.1469in_frame_insC	0.997:0.881	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	128	0	0	88	88	50	-	-	-	GTG	6566573	-	GTG	6566572	7	5	169	1	0	1	1	0	0	0	0	0	4703	797	28	0	4486	0	DNHD1	11	6566572	In_Frame_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09		6566572	128439944	35	10236										
ATM	0	genome.wustl.edu	37	chr11	108192065	108192065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	agatgtgtaagcgcagccttGagtctgtgtattcgctctat	11	8	2	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	11	108192065	108192065	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.6490	p.E2164K	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	160	0	0	142	80	36.04	-	-	-	A	108192065	G	A	108192065	3	1	169	1	0	0	0	0	1	0	0	0	1113	1291	45	2	6664	2	ATM	11	108192065	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	101625493	108192065	26814451	36	10237										
FEZ1	0	genome.wustl.edu	37	chr11	125325768	125325768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttcccttctctatccggctgCtctgcaggctcagccctttc	7	17	3	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	11	125325768	125325768	C	T	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	missense	c.902	p.S301N	0.996	NULL	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	114	0	0	114	63	35.59	-	-	-	T	125325768	C	T	125325768	3	4	169	1	0	0	0	0	1	0	0	0	5869	797	28	4	296	4	FEZ1	11	125325768	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	17133703	125325768	9680748	37	10238										
AKAP3	0	genome.wustl.edu	37	chr12	4736063	4736063	+	Frame_Shift_Del	DEL	T	T	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gttcatcagatgttctaccaTctgcccactcatgtggccat							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	12	4736063	4736063	T	-	DEL	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	frame_shift_del	c.2005	p.M669fs	0.328	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	57	0	0	130	62	31.79	-	-	-	-	4736063	T	-	4736063	7	5	169	1	0	1	0	1	0	0	0	0	452	1435	50	0	564	0	AKAP3	12	4736063	Frame_Shift_Del	DEL	T	TCGA-A8-A07E-01A-11W-A050-09		4736063	129115832	38	10239										
CDKN1B	0	genome.wustl.edu	37	chr12	12870853	12870853	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ggcggagcaccccaagccctCggcctgcaggaacctcttcg	12	17	1	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	12	12870853	12870853	C	A	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	nonsense	c.80	p.S27*	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	25	0	0	18	7	28	-	-	-	A	12870853	C	A	12870853	4	1	169	1	0	0	0	0	0	1	0	0	3188	893	31	3	82	3	CDKN1B	12	12870853	Nonsense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	8134790	12870853	120981042	39	10240										
MED13L	0	genome.wustl.edu	37	chr12	116450669	116450669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	agtagcaggattgctagcagGctcttcttcaagagttggag	13	7	3	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	12	116450669	116450669	G	A	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.1213	p.P405S	0.984	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	221	0	0	219	74	25.08	-	-	-	A	116450669	G	A	116450669	3	1	169	1	0	0	0	0	1	0	0	0	9502	1203	42	4	5511	4	MED13L	12	116450669	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	103579816	116450669	17401226	40	10241										
LRRC16B	0	genome.wustl.edu	37	chr14	24524512	24524512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttttggatttcagccacttgGagagccggtaagcagatggg	14	7	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	14	24524512	24524512	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.598	p.E200K	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	118	0	0	148	36	19.57	-	-	-	A	24524512	G	A	24524512	3	1	169	1	0	0	0	0	1	0	0	0	9038	1175	41	2	628	2	LRRC16B	14	24524512	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09		24524512	82825028	41	10242										
SIX4	0	genome.wustl.edu	37	chr14	61186564	61186564	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	actggctgtttgctccggaaTtggggatctggacaatgcca	13	9	1	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	14	61186564	61186564	T	C	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	missense	c.1463	p.N488S	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	88	0	0	94	32	25.2	-	-	-	C	61186564	T	C	61186564	3	2	169	1	0	0	0	0	1	0	0	0	14438	1493	52	5	890	5	SIX4	14	61186564	Missense_Mutation	SNP	T	TCGA-A8-A07E-01A-11W-A050-09	36662052	61186564	46162976	42	10243										
DYNC1H1	0	genome.wustl.edu	37	chr14	102467878	102467878	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tggtttgaattcagataagaGaagtgtggaatacttatgaa	11	2	1	4			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	14	102467878	102467878	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	nonsense	c.4402	p.E1468*	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	94	0	0	270	40	12.9	-	-	-	T	102467878	G	T	102467878	4	4	169	1	0	0	0	0	0	1	0	0	4876	943	33	2	4484	2	DYNC1H1	14	102467878	Nonsense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	41281314	102467878	4881662	43	10244										
FSIP1	0	genome.wustl.edu	37	chr15	39910370	39910371	+	Frame_Shift_Ins	INS	-	-	T													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttctgaagaaagtttaatgaINStggatttttgtttaagtatg							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	39910370	39910371	-	T	INS	FSIP1	ENST00000350221	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1265_1264	p.I422fs	0.004:0.021	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	68	0	0	75	32	29.91	-	-	-	T	39910371	-	T	39910370	7	5	169	1	0	1	1	0	0	0	0	0	6123	333	12	0	488	0	FSIP1	15	39910370	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09		39910370	62621022	44	10245										
MAP1A	0	genome.wustl.edu	37	chr15	43813948	43813948	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tactcacacacattggggcaGacaacctgccaggcatcaat	8	13	2	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43813948	43813948	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.277	p.D93N	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	73	0	0	137	63	31.5	-	-	-	A	43813948	G	A	43813948	3	1	169	1	0	0	0	0	1	0	0	0	9298	942	33	2	279	2	MAP1A	15	43813948	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	3903578	43813948	58717444	45	10246			1	22		6	6	4927	G		9.760187e-13
MAP1A	0	genome.wustl.edu	37	chr15	43814110	43814110	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctgagaagctgcggcttcctGatgcctcccggaaagccaag	12	13	0	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43814110	43814110	G	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.439	p.D147H	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	77	0	0	87	42	32.56	-	-	-	C	43814110	G	C	43814110	3	2	169	1	0	0	0	0	1	0	0	0	9298	1290	45	2	441	2	MAP1A	15	43814110	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	162	43814110	58717282	46	10247			1	22		6	6	4927	G		9.760187e-13
MAP1A	0	genome.wustl.edu	37	chr15	43814496	43814496	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ggaaatgctccccaaaacaaGatcttggagggcctagaaaa	10	9	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43814496	43814496	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.825	p.K275	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	57	0	0	92	28	23.33	-	-	-	A	43814496	G	A	43814496	2	1	169	1	0	0	0	0	0	0	0	1	9298	933	33	2		2	MAP1A	15	43814496	Silent	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	386	43814496	58716896	47	10248			1	22		6	6	4927	G		9.760187e-13
MAP1A	0	genome.wustl.edu	37	chr15	43814971	43814971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ggaaagagctcaagaaggatGaaggaaggaaggaggagaag	18	2	1	4			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43814971	43814971	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.1300	p.E434K	0.993	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	89	0	0	101	33	24.63	-	-	-	A	43814971	G	A	43814971	3	1	169	1	0	0	0	0	1	0	0	0	9298	1291	45	2	1302	2	MAP1A	15	43814971	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	475	43814971	58716421	48	10249			1	22		6	6	4927	G		9.760187e-13
MAP1A	0	genome.wustl.edu	37	chr15	43817718	43817718	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gaagataaagttccagggttGaaagacagaacctcagaaca	10	7	1	5			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43817718	43817718	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.4047	p.L1349	0.001	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	114	0	0	176	56	24.14	-	-	-	A	43817718	G	A	43817718	2	1	169	1	0	0	0	0	0	0	0	1	9298	1281	45	2		2	MAP1A	15	43817718	Silent	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	2747	43817718	58713674	49	10250			1	22		6	6	4927	G		9.760187e-13
MAP1A	0	genome.wustl.edu	37	chr15	43818874	43818874	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctttcctagatgagggcccaGatgatgagcaagaagtaccc	11	10	0	6			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	15	43818874	43818874	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.5203	p.D1735N	0.970	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	70	0	0	98	29	22.66	-	-	-	A	43818874	G	A	43818874	3	1	169	1	0	0	0	0	1	0	0	0	9298	942	33	2	5205	2	MAP1A	15	43818874	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	1156	43818874	58712518	50	10251			1	22		6	6	4927	G		9.760187e-13
EDC4	0	genome.wustl.edu	37	chr16	67911254	67911254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctccacagctggcctgcctgGatgaggcaggcaacctgttc	12	14	0	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	16	67911254	67911254	G	A	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	missense	c.586	p.D196N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	121	0	0	64	37	36.63	-	-	-	A	67911254	G	A	67911254	3	1	169	1	0	0	0	0	1	0	0	0	4943	1174	41	2	604	2	EDC4	16	67911254	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09		67911254	22443499	51	10252										
LLGL1	0	genome.wustl.edu	37	chr17	18140040	18140042	+	In_Frame_Del	DEL	AGG	AGG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gcacgctgacagcctggcccAggctgccgaggacgactggc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	17	18140040	18140042	AGG	-	DEL	LLGL1	ENST00000316843	human	ensembl	69_37n	1	known	in_frame_del	c.1472_1474	p.QA491in_frame_delP	1.000:1.000:1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	17	0	0	4	4	50	-	-	-	-	18140042	AGG	-	18140040	7	5	169	1	0	1	0	1	0	0	0	0	8889	188	7	0	1518	0	LLGL1	17	18140040	In_Frame_Del	DEL	AGG	TCGA-A8-A07E-01A-11W-A050-09		18140040	63055170	52	10253	86	2								
LLGL1	0	genome.wustl.edu	37	chr17	18140048	18140050	+	In_Frame_Del	DEL	GAG	GAG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	acagcctggcccaggctgccGaggacgactggccacccttc							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	17	18140048	18140050	GAG	-	DEL	LLGL1	ENST00000316843	human	ensembl	69_37n	1	known	in_frame_del	c.1480_1482	p.E494in_frame_del	1.000:1.000:1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	17	0	0	5	4	44.44	-	-	-	-	18140050	GAG	-	18140048	7	5	169	1	0	1	0	1	0	0	0	0	8889	1059	37	0	1526	0	LLGL1	17	18140048	In_Frame_Del	DEL	GAG	TCGA-A8-A07E-01A-11W-A050-09	8	18140048	63055162	53	10254	86	2								
KIF2B	0	genome.wustl.edu	37	chr17	51901164	51901164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gcaaaaggtggacctcactcGctacctgcagaaccagacct	9	14	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	17	51901164	51901164	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.770	p.R257H	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	96	0	0	71	40	36.04	-	-	-	A	51901164	G	A	51901164	3	1	169	1	0	0	0	0	1	0	0	0	8350	1087	38	1	772	1	KIF2B	17	51901164	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	33761116	51901164	29294046	54	10255										
SBNO2	0	genome.wustl.edu	37	chr19	1119121	1119121	+	Frame_Shift_Del	DEL	G	G	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cgtgcgatgtacatgccgctGaccttcatgtccatggccac							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	1119121	1119121	G	-	DEL	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	frame_shift_del	c.1416	p.S473fs	1.000	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	17	0	0	12	28	66.67	-	-	-	-	1119121	G	-	1119121	7	5	169	1	0	1	0	1	0	0	0	0	13950	1277	45	0	2760	0	SBNO2	19	1119121	Frame_Shift_Del	DEL	G	TCGA-A8-A07E-01A-11W-A050-09		1119121	58009862	55	10256										
MYO1F	0	genome.wustl.edu	37	chr19	8615476	8615476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ctccactcgggcgtaattccCgtcttcacagaaactgatgt	8	13	2	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	8615476	8615476	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	missense	c.874	p.G292R	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	81	0	0	128	35	21.47	-	-	-	T	8615476	C	T	8615476	3	4	169	1	0	0	0	0	1	0	0	0	10145	652	23	1	2502	1	MYO1F	19	8615476	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	7496355	8615476	50513507	56	10257										
MYO9B	0	genome.wustl.edu	37	chr19	17212961	17212961	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tggcctcctgccacggcagcAggcggactttgatgacctgt	13	13	0	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	17212961	17212961	A	G	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.434	p.Q145R	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	42	0	0	60	19	23.75	-	-	-	G	17212961	A	G	17212961	3	3	169	1	0	0	0	0	1	0	0	0	10157	188	7	5	436	5	MYO9B	19	17212961	Missense_Mutation	SNP	A	TCGA-A8-A07E-01A-11W-A050-09	8597485	17212961	41916022	57	10258										
PSG1	0	genome.wustl.edu	37	chr19	43375943	43375943	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gagattcagggtgactgggtCactgcggctggcactcactg	15	10	3	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	43375943	43375943	C	T	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.685	p.D229N	0.109	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	206	0	0	224	62	21.6	-	-	-	T	43375943	C	T	43375943	3	4	169	1	0	0	0	0	1	0	0	0	12733	826	29	2	643	2	PSG1	19	43375943	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	26162982	43375943	15753040	58	10259										
ZNF534	0	genome.wustl.edu	37	chr19	52942200	52942200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tggagagaagctttacaaatGtaatgaatgtggcaaggtct	12	4	1	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	52942200	52942200	G	A	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.1526	p.C509Y	0.073	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	109	0	0	296	41	12.17	-	-	-	A	52942200	G	A	52942200	3	1	169	1	0	0	0	0	1	0	0	0	18069	1377	48	4	1540	4	ZNF534	19	52942200	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	9566257	52942200	6186783	59	10260										
TMC4	0	genome.wustl.edu	37	chr19	54665951	54665951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gtagatgagccccagcacctCgtcgggcacctggaactcct	11	15	0	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	54665951	54665951	C	T	SNP	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	missense	c.1573	p.E525K	0.990	pfam_TMC	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	61	0	0	65	12	15.58	-	-	-	T	54665951	C	T	54665951	3	4	169	1	0	0	0	0	1	0	0	0	16082	893	31	1	567	1	TMC4	19	54665951	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	1723751	54665951	4463032	60	10261										
GP6	0	genome.wustl.edu	37	chr19	55543873	55543873	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ggggtctggggaaggactcaCcactctgcgctggcacacgc	15	13	3	0			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	55543873	55543873	C	T	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	splice_site	c.67+1	e2+1	0.980	-	-	-	no_errors	GP6	HGNC	ENSG00000088053	75	0	0	95	26	21.49	-	-	-	T	55543873	C	T	55543873	5	4	169	1	0	0	0	0	0	0	1	0	6634	521	18	4	1822	4	GP6	19	55543873	Splice_Site	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	877922	55543873	3585110	61	10262										
ZNF580	0	genome.wustl.edu	37	chr19	56153940	56153941	+	Frame_Shift_Ins	INS	-	-	C													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	cggaggccatggacccaccgINSccccccaaggctcccccttt							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	19	56153940	56153941	-	C	INS	ZNF580	ENST00000325333	human	ensembl	69_37n	1	known	frame_shift_ins	c.66_67	p.K24fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF580	HGNC	ENSG00000213015	19	0	0	3	2	40	-	-	-	C	56153941	-	C	56153940	7	5	169	1	0	1	1	0	0	0	0	0	18108	1074	38	0	68	0	ZNF580	19	56153940	Frame_Shift_Ins	INS	-	TCGA-A8-A07E-01A-11W-A050-09	610067	56153940	2975043	62	10263										
LRP5L	0	genome.wustl.edu	37	chr22	25750714	25750714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	aagtcccccagcagggtgaaCctgaaaatgtgtgggagctt	13	9	0	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	22	25750714	25750714	C	A	SNP	LRP5L	ENST00000402785	human	ensembl	69_37n	-1	known	missense	c.504	p.R168S	1.000	smart_LDLR_classB_rpt	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5L	HGNC	ENSG00000100068	140	0	0	293	44	13.06	-	-	-	A	25750714	C	A	25750714	3	1	169	1	0	0	0	0	1	0	0	0	9027	506	18	4	262	4	LRP5L	22	25750714	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09		25750714	25553852	63	10264										
CACNA1I	0	genome.wustl.edu	37	chr22	40069992	40069992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gaagctgttgaagatggccaCaggaatgcgggccctgctgg	16	9	0	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	22	40069992	40069992	C	T	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	missense	c.4826	p.T1609I	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	35	0	0	32	24	42.86	-	-	-	T	40069992	C	T	40069992	3	4	169	1	0	0	0	0	1	0	0	0	2571	478	17	4	4922	4	CACNA1I	22	40069992	Missense_Mutation	SNP	C	TCGA-A8-A07E-01A-11W-A050-09	14319278	40069992	11234574	64	10265										
CHM	0	genome.wustl.edu	37	chrX	85128090	85128090	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	ttatcatttcctaaaccacaAtctgggccagagcagacata	6	11	2	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	X	85128090	85128090	A	T	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.1737	p.D579E	0.495	pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	122	0	0	89	46	34.07	-	-	-	T	85128090	A	T	85128090	3	4	169	1	0	0	0	0	1	0	0	0	3379	98	4	5	232	5	CHM	23	85128090	Missense_Mutation	SNP	A	TCGA-A8-A07E-01A-11W-A050-09		85128090	70142470	65	10266										
GLRA4	0	genome.wustl.edu	37	chrX	102962343	102962344	+	Frame_Shift_Del	DEL	TG	TG	-													0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	tggaggttggggactataaaTgccagaaccttccattggac							TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	X	102962343	102962344	TG	-	DEL	GLRA4	ENST00000372617	human	ensembl	69_37n	-1	known	frame_shift_del	c.1183_1182	p.I395fs	0.935:0.791	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828	185	0	0	171	79	30.98	-	-	-	-	102962344	TG	-	102962343	7	5	169	1	0	1	0	1	0	0	0	0	6509	1464	51	0	73	0	GLRA4	23	102962343	Frame_Shift_Del	DEL	TG	TCGA-A8-A07E-01A-11W-A050-09	17834253	102962343	52308217	66	10267										
ARHGAP36	0	genome.wustl.edu	37	chrX	130219991	130219991	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gagtccaggaaaacaaagctGgggattgatcactatgttgc	12	7	1	1			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	X	130219991	130219991	G	T	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	silent	c.1209	p.L403	0.994	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	562	0	0	569	163	22.24	-	-	-	T	130219991	G	T	130219991	2	4	169	1	0	0	0	0	0	0	0	1	885	1335	47	4		4	ARHGAP36	23	130219991	Silent	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	27257648	130219991	25050569	67	10268										
PHF6	0	genome.wustl.edu	37	chrX	133527637	133527637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.184615384615385	12	0.00949042479346055	2.54370629370629	2.26107226107226	2.57294429708223	0.000212680037690134	0.00630306293518033	7	gcatgataaagctcaaatacGagagaaaccttcacaaggaa	8	8	2	2			TCGA-A8-A07E-01A-11W-A050-09	TCGA-A8-A07E-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa018a20-2c26-4d47-831f-75280b6464df	305efad7-ff5c-4c4a-8f59-2f5fd43710ec	X	133527637	133527637	G	A	SNP	PHF6	ENST00000394292	human	ensembl	69_37n	1	known	missense	c.347	p.R116Q	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF6	HGNC	ENSG00000156531	114	0	0	164	27	14.14	-	-	-	A	133527637	G	A	133527637	3	1	169	1	0	0	0	0	1	0	0	0	11912	1058	37	1	357	1	PHF6	23	133527637	Missense_Mutation	SNP	G	TCGA-A8-A07E-01A-11W-A050-09	3307646	133527637	21742923	68	10269										
NBPF9	0	genome.wustl.edu	37	chr1	144827098	144827098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	catgttggcttttctcttgaCgtgggaggtgagtacctttc	12	8	1	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	1	144827098	144827098	C	T	SNP	NBPF9	ENST00000375552	human	ensembl	69_37n	1	known	missense	c.1691	p.T564M	0.002	pfam_NBPF_dom	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF9	HGNC	ENSG00000168614	40	0	0	18	3	14.29	-	-	-	T	144827098	C	T	144827098	3	4	170	1	0	0	0	0	1	0	0	0	10271	535	19	1	2537	1	NBPF9	1	144827098	Missense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09		144827098	104423523	1	10270										
FMO5	0	genome.wustl.edu	37	chr1	146684013	146684013	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gatcccctccagaattcccaAtgccaattataatgactctc	4	14	1	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	1	146684013	146684013	A	T	SNP	FMO5	ENST00000254090	human	ensembl	69_37n	-1	known	missense	c.578	p.I193N	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781	136	0	0	275	108	28.2	-	-	-	T	146684013	A	T	146684013	3	4	170	1	0	0	0	0	1	0	0	0	6004	101	4	5	1186	5	FMO5	1	146684013	Missense_Mutation	SNP	A	TCGA-A8-A07F-01A-11W-A019-09	1856915	146684013	102566608	2	10271										
NBPF14	0	genome.wustl.edu	37	chr1	148005450	148005451	+	In_Frame_Ins	INS	-	-	CTC													0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	ccccttcttttcttccccttINScttctttccttctttgatct							TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	1	148005450	148005451	-	CTC	INS	NBPF14	ENST00000369219	human	ensembl	69_37n	-1	known	in_frame_ins	c.2475_2474	p.827in_frame_insR	0.028:0.027	NULL	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	46	0	0	37	8	17.78	-	-	-	CTC	148005451	-	CTC	148005450	7	5	170	1	0	1	1	0	0	0	0	0	10266	1780	62	0	298	0	NBPF14	1	148005450	In_Frame_Ins	INS	-	TCGA-A8-A07F-01A-11W-A019-09	1321437	148005450	101245171	3	10272										
ITPKB	0	genome.wustl.edu	37	chr1	226923335	226923335	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tgagtcttcgtaggatgaggAgaagcccgtggaggaggccg	18	7	1	3			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	1	226923335	226923335	A	G	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.1825	p.S609P	1.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	25	0	0	33	9	21.43	-	-	-	G	226923335	A	G	226923335	3	3	170	1	0	0	0	0	1	0	0	0	7972	304	11	5	1043	5	ITPKB	1	226923335	Missense_Mutation	SNP	A	TCGA-A8-A07F-01A-11W-A019-09	78917885	226923335	22327286	4	10273										
SLC26A6	0	genome.wustl.edu	37	chr3	48664481	48664481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	cttccatcttatctcctgagCtcacctgctggggagccaga	9	14	3	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	3	48664481	48664481	C	G	SNP	SLC26A6	ENST00000395550	human	ensembl	69_37n	-1	known	missense	c.1901	p.S634T	0.032	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697	47	0	0	33	15	31.25	-	-	-	G	48664481	C	G	48664481	3	3	170	1	0	0	0	0	1	0	0	0	14610	797	28	4	394	4	SLC26A6	3	48664481	Missense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09		48664481	149357949	5	10274										
DNAJC19	0	genome.wustl.edu	37	chr3	180702454	180702454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tttagcttgaccttctagtaAatctttagcttcattgattt	5	7	3	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	3	180702454	180702454	A	G	SNP	DNAJC19	ENST00000382564	human	ensembl	69_37n	-1	known	silent	c.325	p.L109	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC19	HGNC	ENSG00000205981	45	0	0	18	13	41.94	-	-	-	G	180702454	A	G	180702454	2	3	170	1	0	0	0	0	0	0	0	1	4673	11	1	5		5	DNAJC19	3	180702454	Silent	SNP	A	TCGA-A8-A07F-01A-11W-A019-09	132037973	180702454	17319976	6	10275										
GPRIN3	0	genome.wustl.edu	37	chr4	90170956	90170956	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gcgggctggctgctccctggCagctggggattgccgggaga	19	11	0	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	4	90170956	90170956	C	A	SNP	GPRIN3	ENST00000333209	human	ensembl	69_37n	-1	known	silent	c.306	p.L102	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	127	0	0	93	31	25	-	-	-	A	90170956	C	A	90170956	2	1	170	1	0	0	0	0	0	0	0	1	6782	697	25	4		4	GPRIN3	4	90170956	Silent	SNP	C	TCGA-A8-A07F-01A-11W-A019-09		90170956	100983320	7	10276										
WDR17	0	genome.wustl.edu	37	chr4	177071638	177071638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gcctccaggtggcagtgacaAtttatggaacttggttgctg	13	8	0	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	4	177071638	177071638	A	G	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.2270	p.N757S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	80	0	0	72	14	16.28	-	-	-	G	177071638	A	G	177071638	3	3	170	1	0	0	0	0	1	0	0	0	17374	101	4	5	2332	5	WDR17	4	177071638	Missense_Mutation	SNP	A	TCGA-A8-A07F-01A-11W-A019-09	86900682	177071638	14082638	8	10277										
MAP3K1	0	genome.wustl.edu	37	chr5	56178146	56178146	+	Frame_Shift_Del	DEL	A	A	-													0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tcctgaaaacaaagactcagAtaaactttccccagtcttta							TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	5	56178146	56178146	A	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3119	p.D1040fs	0.989	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	168	0	0	79	65	43.92	-	-	-	-	56178146	A	-	56178146	7	5	170	1	0	1	0	1	0	0	0	0	9314	333	12	0	3173	0	MAP3K1	5	56178146	Frame_Shift_Del	DEL	A	TCGA-A8-A07F-01A-11W-A019-09		56178146	124737114	9	10278	87	2								
MAP3K1	0	genome.wustl.edu	37	chr5	56178150	56178153	+	Frame_Shift_Del	DEL	ACTT	ACTT	-													0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gaaaacaaagactcagataaActttccccagtctttactca							TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	ACTT	ACTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	5	56178150	56178153	ACTT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3123_3126	p.K1041fs	1.000:1.000:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	171	0	0	82	65	43.92	-	-	-	-	56178153	ACTT	-	56178150	7	5	170	1	0	1	0	1	0	0	0	0	9314	40	2	0	3177	0	MAP3K1	5	56178150	Frame_Shift_Del	DEL	ACTT	TCGA-A8-A07F-01A-11W-A019-09	4	56178150	124737110	10	10279	87	2								
PCDHA6	0	genome.wustl.edu	37	chr5	140209877	140209877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	caccgagggcgcgtgcacggCggacaagcccacgctggtgt	16	14	0	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	5	140209877	140209877	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.2201	p.A734V	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	29	0	0	23	12	34.29	-	-	-	T	140209877	C	T	140209877	3	4	170	1	0	0	0	0	1	0	0	0	11601	768	27	1	2203	1	PCDHA6	5	140209877	Missense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09	84031727	140209877	40705383	11	10280										
RIPK1	0	genome.wustl.edu	37	chr6	3077011	3077012	+	RNA	INS	-	-	G													0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	ttacagggtacagctctgccINSggggggggaaaaagtggtac							TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	6	3077011	3077012	-	G	INS	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	24	0	0	31	5	13.89	-	-	-	G	3077012	-	G	3077011	6	5	170	0	1	1	1	0	0	0	0	0	13466	667	23	0		0	RIPK1	6	3077011	RNA	INS	-	TCGA-A8-A07F-01A-11W-A019-09		3077011	168038056	12	10281										
HIST1H2AM	0	genome.wustl.edu	37	chr6	27860570	27860570	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tttgtggtggctctcagtctTcttggggagcagtacggcct	14	9	3	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	6	27860570	27860570	T	A	SNP	HIST1H2AM	ENST00000359611	human	ensembl	69_37n	-1	known	nonsense	c.358	p.K120*	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AM	HGNC	ENSG00000233224	116	0	0	128	28	17.83	-	-	-	A	27860570	T	A	27860570	4	1	170	1	0	0	0	0	0	1	0	0	7190	1792	62	5	38	5	HIST1H2AM	6	27860570	Nonsense_Mutation	SNP	T	TCGA-A8-A07F-01A-11W-A019-09	24783559	27860570	143254497	13	10282										
BAI3	0	genome.wustl.edu	37	chr6	70071317	70071317	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tttgaacctcgcacagctgtGaagaatttcatggcctctga	9	10	2	4			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	6	70071317	70071317	G	A	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	silent	c.4152	p.V1384	0.998	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	172	0	0	236	60	20.27	-	-	-	A	70071317	G	A	70071317	2	1	170	1	0	0	0	0	0	0	0	1	1304	1277	45	2		2	BAI3	6	70071317	Silent	SNP	G	TCGA-A8-A07F-01A-11W-A019-09	42210747	70071317	101043750	14	10283										
LRP11	0	genome.wustl.edu	37	chr6	150174187	150174187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	agcagtgcccactcatactgGacgatggcgtggtcatctgt	12	11	3	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	6	150174187	150174187	G	A	SNP	LRP11	ENST00000239367	human	ensembl	69_37n	-1	known	silent	c.723	p.V241	0.764	superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_PKD_dom,superfamily_LDrepeatLR_classA_rpt,smart_MANSC_N,smart_PKD/Chitinase_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	LRP11	HGNC	ENSG00000120256	53	0	0	70	45	38.79	-	-	-	A	150174187	G	A	150174187	2	1	170	1	0	0	0	0	0	0	0	1	9019	1161	41	2		2	LRP11	6	150174187	Silent	SNP	G	TCGA-A8-A07F-01A-11W-A019-09	80102870	150174187	20940880	15	10284										
WTAP	0	genome.wustl.edu	37	chr6	160163165	160163165	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	caagctttggagggcaagtaCacagatcttaactgtaagtt	10	7	1	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	6	160163165	160163165	C	A	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	1	known	nonsense	c.132	p.Y44*	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	37	0	0	14	43	75.44	-	-	-	A	160163165	C	A	160163165	4	1	170	1	0	0	0	0	0	1	0	0	17506	489	17	4	142	4	WTAP	6	160163165	Nonsense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09	9988978	160163165	10951902	16	10285										
ADCY1	0	genome.wustl.edu	37	chr7	45632382	45632382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gtgccaatgccttgctcttcGtcggtgtgaacatgtatggg	13	9	1	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	7	45632382	45632382	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	missense	c.664	p.V222I	0.988	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	54	0	0	94	45	32.37	-	-	-	A	45632382	G	A	45632382	3	1	170	1	0	0	0	0	1	0	0	0	292	1145	40	1	670	1	ADCY1	7	45632382	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		45632382	113506281	17	10286										
POM121L12	0	genome.wustl.edu	37	chr7	53104223	53104223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gggtctccttcgccctcgagGtcacccagtctgctggcccc	11	18	3	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	7	53104223	53104223	G	T	SNP	POM121L12	ENST00000408890	human	ensembl	69_37n	1	known	missense	c.859	p.V287F	0.003	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900	39	0	0	32	12	27.27	-	-	-	T	53104223	G	T	53104223	3	4	170	1	0	0	0	0	1	0	0	0	12315	1261	44	4	861	4	POM121L12	7	53104223	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09	7471841	53104223	106034440	18	10287										
MRPL15	0	genome.wustl.edu	37	chr8	55049108	55049108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tcggagaagaggtagaaaatGtggcagaggccataaaggag	16	4	0	4			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	8	55049108	55049108	G	A	SNP	MRPL15	ENST00000260102	human	ensembl	69_37n	1	known	missense	c.146	p.C49Y	1.000	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	MRPL15	HGNC	ENSG00000137547	80	0	0	96	20	17.24	-	-	-	A	55049108	G	A	55049108	3	1	170	1	0	0	0	0	1	0	0	0	9852	1377	48	4	152	4	MRPL15	8	55049108	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		55049108	91314914	19	10288										
KIAA1462	0	genome.wustl.edu	37	chr10	30336579	30336579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	cgcggacgtcttacgatgtgCgagggccgcagggccatcct	15	13	1	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	10	30336579	30336579	C	T	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.163	p.A55T	0.001	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	39	0	0	32	14	30.43	-	-	-	T	30336579	C	T	30336579	3	4	170	1	0	0	0	0	1	0	0	0	8286	768	27	1	3928	1	KIAA1462	10	30336579	Missense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09		30336579	105198168	20	10289										
PIK3AP1	0	genome.wustl.edu	37	chr10	98469721	98469721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gggctgtagacgatgaggatGtcgcatcctctgggcacccc	14	12	1	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	10	98469721	98469721	G	A	SNP	PIK3AP1	ENST00000339364	human	ensembl	69_37n	-1	known	silent	c.33	p.D11	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	43	0	0	29	25	46.3	-	-	-	A	98469721	G	A	98469721	2	1	170	1	0	0	0	0	0	0	0	1	11982	1368	48	4		4	PIK3AP1	10	98469721	Silent	SNP	G	TCGA-A8-A07F-01A-11W-A019-09	68133142	98469721	37065026	21	10290										
P2RY6	0	genome.wustl.edu	37	chr11	73008182	73008182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	gcttcctgctgccctttgctGccctgctggcctgctactgt	10	16	0	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	11	73008182	73008182	G	T	SNP	P2RY6	ENST00000349767	human	ensembl	69_37n	1	known	missense	c.619	p.A207S	0.960	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_P2Y6_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_P2Y3_purnocptor,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY6	HGNC	ENSG00000171631	31	0	0	23	19	45.24	-	-	-	T	73008182	G	T	73008182	3	4	170	1	0	0	0	0	1	0	0	0	11427	1319	46	4	621	4	P2RY6	11	73008182	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		73008182	61998334	22	10291										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256761	69256761	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	tgaagtggcagcggggcccgTaggggcaaaagccgatggtg	19	8	0	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	14	69256761	69256761	T	G	SNP	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	missense	c.506	p.Y169S	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	32	0	0	14	11	44	-	-	-	G	69256761	T	G	69256761	3	3	170	1	0	0	0	0	1	0	0	0	17742	1638	57	5	514	5	ZFP36L1	14	69256761	Missense_Mutation	SNP	T	TCGA-A8-A07F-01A-11W-A019-09		69256761	38092779	23	10292										
AHNAK2	0	genome.wustl.edu	37	chr14	105419083	105419083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	cctcgggcacagggccctccGgaagtttcacatccacttgg	11	15	1	0			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	14	105419083	105419083	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.2705	p.P902L	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	66	0	0	37	11	22.45	-	-	-	A	105419083	G	A	105419083	3	1	170	1	0	0	0	0	1	0	0	0	415	1116	39	1	14686	1	AHNAK2	14	105419083	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09	36162322	105419083	1930457	24	10293										
OTOA	0	genome.wustl.edu	37	chr16	21728239	21728239	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	ttctggcagatggtccaagcGgaagacactgccccaggcat	12	12	1	2			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	16	21728239	21728239	G	A	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	silent	c.1542	p.A514	0.001	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	194	0	0	297	81	21.32	-	-	-	A	21728239	G	A	21728239	2	1	170	1	0	0	0	0	0	0	0	1	11375	1103	39	1		1	OTOA	16	21728239	Silent	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		21728239	68626514	25	10294										
CD300E	0	genome.wustl.edu	37	chr17	72613482	72613482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	aatgctctcacatgacgtgtCgtactgtcctcggcaccagt	9	13	1	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	17	72613482	72613482	C	T	SNP	CD300E	ENST00000426295	human	ensembl	69_37n	-1	known	missense	c.286	p.D96N	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300E	HGNC	ENSG00000186407	215	0	0	141	134	48.73	-	-	-	T	72613482	C	T	72613482	3	4	170	1	0	0	0	0	1	0	0	0	3027	884	31	1	466	1	CD300E	17	72613482	Missense_Mutation	SNP	C	TCGA-A8-A07F-01A-11W-A019-09		72613482	8581728	26	10295										
PRND	0	genome.wustl.edu	37	chr20	4705388	4705388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	agccttcatcaagcaaggccGcaagctcgacattgacttcg	9	13	2	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	20	4705388	4705388	G	A	SNP	PRND	ENST00000305817	human	ensembl	69_37n	1	known	missense	c.191	p.R64H	0.140	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864	32	0	0	26	6	18.75	-	-	-	A	4705388	G	A	4705388	3	1	170	1	0	0	0	0	1	0	0	0	12624	1087	38	1	193	1	PRND	20	4705388	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		4705388	58320132	27	10296										
HTR2C	0	genome.wustl.edu	37	chrX	114082686	114082686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.993476777398216	0.655952380952381	0	0.706410256410256	1	1	0	ggatcggtatgtagcaatacGtaatcctattgagcatagcc	10	8	0	1			TCGA-A8-A07F-01A-11W-A019-09	TCGA-A8-A07F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d907e6-4ba0-431f-a009-8366644ffaf0	5281a45b-e0b8-404f-ae25-91cd7ae5bf30	X	114082686	114082686	G	A	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	missense	c.470	p.R157H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	273	0	0	165	44	21.05	-	-	-	A	114082686	G	A	114082686	3	1	170	1	0	0	0	0	1	0	0	0	7497	1145	40	1	480	1	HTR2C	23	114082686	Missense_Mutation	SNP	G	TCGA-A8-A07F-01A-11W-A019-09		114082686	41187874	28	10297										
AKR7A3	0	genome.wustl.edu	37	chr1	19612756	19612756	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tggcatatgcaggtagaagaGgtccactcggggacactgca	14	9	0	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	1	19612756	19612756	G	C	SNP	AKR7A3	ENST00000361640	human	ensembl	69_37n	-1	known	missense	c.325	p.L109V	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A3	HGNC	ENSG00000162482	43	0	0	53	16	23.19	-	-	-	C	19612756	G	C	19612756	3	2	171	1	0	0	0	0	1	0	0	0	476	1000	35	4	694	4	AKR7A3	1	19612756	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09		19612756	229637865	1	10298										
RPTN	0	genome.wustl.edu	37	chr1	152128071	152128071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	actttggccttgtccgtctgGctgaccataatgataactct	8	11	2	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	1	152128071	152128071	G	A	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.1504	p.P502S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	743	0	0	814	638	43.88	-	-	-	A	152128071	G	A	152128071	3	1	171	1	0	0	0	0	1	0	0	0	13750	1203	42	4	854	4	RPTN	1	152128071	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	132515315	152128071	97122550	2	10299										
PLA2G4A	0	genome.wustl.edu	37	chr1	186925327	186925327	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ggccttggtgagtgattcagCtttattcaataccagagaag	11	7	2	3			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	1	186925327	186925327	C	G	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.1430	p.A477G	0.038	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	197	0	0	232	43	15.64	-	-	-	G	186925327	C	G	186925327	3	3	171	1	0	0	0	0	1	0	0	0	12075	797	28	4	1480	4	PLA2G4A	1	186925327	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	34797256	186925327	62325294	3	10300										
KIAA1383	0	genome.wustl.edu	37	chr1	232940798	232940798	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ctgtggacagttaactaactGgctctgtttagcatgggaaa	11	7	1	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	1	232940798	232940798	G	A	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	nonsense	c.29	p.W10*	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	65	0	0	103	18	14.88	-	-	-	A	232940798	G	A	232940798	4	1	171	1	0	0	0	0	0	1	0	0	8280	1357	47	4	31	4	KIAA1383	1	232940798	Nonsense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	46015471	232940798	16309823	4	10301										
TPO	0	genome.wustl.edu	37	chr2	1546242	1546242	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tcacaggctgccgagagcccTctgagggcaaagtggcagga	15	11	2	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	2	1546242	1546242	T	A	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	missense	c.2798	p.L933H	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	83	0	0	90	33	26.83	-	-	-	A	1546242	T	A	1546242	3	1	171	1	0	0	0	0	1	0	0	0	16506	1551	54	5	2860	5	TPO	2	1546242	Missense_Mutation	SNP	T	TCGA-A8-A07G-01A-11W-A050-09		1546242	241653131	5	10302										
RSAD2	0	genome.wustl.edu	37	chr2	7018164	7018164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cccaaccagcgtcaactatcActtcactcgccagtgcaact	5	17	3	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	2	7018164	7018164	A	C	SNP	RSAD2	ENST00000382040	human	ensembl	69_37n	1	known	missense	c.233	p.H78P	1.000	smart_Elp3/MiaB/NifB	pfam_rSAM,smart_Elp3/MiaB/NifB	-	no_errors	RSAD2	HGNC	ENSG00000134321	195	0	0	206	84	28.87	-	-	-	C	7018164	A	C	7018164	3	2	171	1	0	0	0	0	1	0	0	0	13781	159	6	5	235	5	RSAD2	2	7018164	Missense_Mutation	SNP	A	TCGA-A8-A07G-01A-11W-A050-09	5471922	7018164	236181209	6	10303										
CASR	0	genome.wustl.edu	37	chr3	122003481	122003481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ccacgctgcgccgcagcaacGtctcccgcaagcggtccagc	11	19	1	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	3	122003481	122003481	G	A	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.2710	p.V904I	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	46	0	0	53	18	25.35	-	-	-	A	122003481	G	A	122003481	3	1	171	1	0	0	0	0	1	0	0	0	2707	1145	40	1	2732	1	CASR	3	122003481	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09		122003481	76018949	7	10304										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	70	0	0	96	194	66.67	-	-	-	G	178952085	A	G	178952085	3	3	171	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A07G-01A-11W-A050-09	56948604	178952085	19070345	8	10305										
FGFR3	0	genome.wustl.edu	37	chr4	1808375	1808375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	aagctgctgaaggagggccaCcgcatggacaagcccgccaa	13	13	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	4	1808375	1808375	C	T	SNP	FGFR3	ENST00000481110	human	ensembl	69_37n	1	putative	missense	c.2065	p.P689S	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR3	HGNC	ENSG00000068078	14	0	0	8	5	38.46	-	-	-	T	1808375	C	T	1808375	3	4	171	1	0	0	0	0	1	0	0	0	5913	506	18	4	2346	4	FGFR3	4	1808375	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		1808375	189345901	9	10306										
FRYL	0	genome.wustl.edu	37	chr4	48542836	48542836	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cggtcaccaatcaaacttaaTctcaaagagttacttcttgc	5	11	4	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	4	48542836	48542836	T	C	SNP	FRYL	ENST00000514617	human	ensembl	69_37n	-1	novel	missense	c.2437	p.I813V	0.157	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRYL	HGNC	ENSG00000075539	109	0	0	113	41	26.62	-	-	-	C	48542836	T	C	48542836	3	2	171	1	0	0	0	0	1	0	0	0	6113	1432	50	5	3288	5	FRYL	4	48542836	Missense_Mutation	SNP	T	TCGA-A8-A07G-01A-11W-A050-09	46734461	48542836	142611440	10	10307										
KIT	0	genome.wustl.edu	37	chr4	55565832	55565832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tgttgtgtctgtgtccaaagCaagctatcttcttagggaag	11	7	3	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	4	55565832	55565832	C	T	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.656	p.A219V	0.003	pfam_Ig_I-set,smart_Ig_sub,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	205	0	0	205	57	21.67	-	-	-	T	55565832	C	T	55565832	3	4	171	1	0	0	0	0	1	0	0	0	8382	710	25	4	670	4	KIT	4	55565832	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	7022996	55565832	135588444	11	10308										
RXFP1	0	genome.wustl.edu	37	chr4	159559201	159559201	+	Frame_Shift_Del	DEL	A	A	-													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ccagaaaattcaagcaaaccAatttgattatcttgtcaaac							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	4	159559201	159559201	A	-	DEL	RXFP1	ENST00000307765	human	ensembl	69_37n	1	known	frame_shift_del	c.1013	p.Q338fs	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP1	HGNC	ENSG00000171509	123	0	0	98	19	15.97	-	-	-	-	159559201	A	-	159559201	7	5	171	1	0	1	0	1	0	0	0	0	13845	130	5	0	1063	0	RXFP1	4	159559201	Frame_Shift_Del	DEL	A	TCGA-A8-A07G-01A-11W-A050-09	103993369	159559201	31595075	12	10309										
CAPSL	0	genome.wustl.edu	37	chr5	35921198	35921198	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ggcctggatcgccatctctcGgtcatggcgcgctgtccctg	13	15	2	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	5	35921198	35921198	G	A	SNP	CAPSL	ENST00000397366	human	ensembl	69_37n	-1	known	nonsense	c.25	p.R9*	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	CAPSL	HGNC	ENSG00000152611	135	0	0	125	16	11.27	-	-	-	A	35921198	G	A	35921198	4	1	171	1	0	0	0	0	0	1	0	0	2664	1124	39	1	617	1	CAPSL	5	35921198	Nonsense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09		35921198	144994062	13	10310										
PCDHGB1	0	genome.wustl.edu	37	chr5	140730761	140730761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ttgaagagacaagtagatatGtgttgagtgtggaagctaag	14	2	0	4			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	5	140730761	140730761	G	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.934	p.V312L	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	95	0	0	100	14	12.28	-	-	-	T	140730761	G	T	140730761	3	4	171	1	0	0	0	0	1	0	0	0	11635	1377	48	4	936	4	PCDHGB1	5	140730761	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	104809563	140730761	40184499	14	10311										
TAB2	0	genome.wustl.edu	37	chr6	149699358	149699359	+	Frame_Shift_Ins	INS	-	-	T													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gatgaatggaagtaggactcINStaacgcacagcattagtgat							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	6	149699358	149699359	-	T	INS	TAB2	ENST00000286332	human	ensembl	69_37n	1	known	frame_shift_ins	c.307_308	p.T104fs	1.000:1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208	164	0	0	127	37	22.56	-	-	-	T	149699359	-	T	149699358	7	5	171	1	0	1	1	0	0	0	0	0	15588	912	32	0	313	0	TAB2	6	149699358	Frame_Shift_Ins	INS	-	TCGA-A8-A07G-01A-11W-A050-09		149699358	21415709	15	10312										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26233303	26233303	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tccataaccggggctacctcCaaaattgccacctattataa	5	13	0	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	7	26233303	26233303	C	A	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	nonsense	c.769	p.G257*	1.000	NULL	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	123	0	0	109	27	19.85	-	-	-	A	26233303	C	A	26233303	4	1	171	1	0	0	0	0	0	1	0	0	7310	603	21	4	304	4	HNRNPA2B1	7	26233303	Nonsense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		26233303	132905360	16	10313										
POM121L12	0	genome.wustl.edu	37	chr7	53103840	53103840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	atcccctggacagagagcccGccccgcaggccgccccgccg	12	21	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	7	53103840	53103840	G	A	SNP	POM121L12	ENST00000408890	human	ensembl	69_37n	1	known	missense	c.476	p.R159H	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900	44	0	0	33	11	25	-	-	-	A	53103840	G	A	53103840	3	1	171	1	0	0	0	0	1	0	0	0	12315	1087	38	1	478	1	POM121L12	7	53103840	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	26870537	53103840	106034823	17	10314										
GRM8	0	genome.wustl.edu	37	chr7	126173066	126173066	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	aaagctaaccaaatgatgcaGgtggtatacatggtaaatcc	9	7	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	7	126173066	126173066	G	A	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	silent	c.2370	p.T790	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	139	0	0	110	14	11.29	-	-	-	A	126173066	G	A	126173066	2	1	171	1	0	0	0	0	0	0	0	1	6854	987	35	4		4	GRM8	7	126173066	Silent	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	73069226	126173066	32965597	18	10315										
DOCK8	0	genome.wustl.edu	37	chr9	289557	289557	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ctgtgttcagacctacatccGtgagtggctaatcgtgaacc	10	11	1	3			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	9	289557	289557	G	C	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.380	p.R127P	1.000	pfam_DUF3398	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	656	0	0	392	136	25.76	-	-	-	C	289557	G	C	289557	3	2	171	1	0	0	0	0	1	0	0	0	4728	1145	40	3	394	3	DOCK8	9	289557	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09		289557	140923874	19	10316										
ENG	0	genome.wustl.edu	37	chr9	130605384	130605384	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gacactcaccgttgggaactCcaggaagaggacatggactt	12	10	1	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	9	130605384	130605384	C	A	SNP	ENG	ENST00000373203	human	ensembl	69_37n	-1	known	nonsense	c.208	p.E70*	0.688	NULL	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	86	0	0	105	19	15.32	-	-	-	A	130605384	C	A	130605384	4	1	171	1	0	0	0	0	0	1	0	0	5154	864	30	2	1850	2	ENG	9	130605384	Nonsense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	130315827	130605384	10608047	20	10317										
ODF2	0	genome.wustl.edu	37	chr9	131247096	131247097	+	Frame_Shift_Ins	INS	-	-	C													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gcttgaagaaggccatccgaINSgcccagaaggagcgagccga							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	9	131247096	131247097	-	C	INS	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	frame_shift_ins	c.1221_1222	p.A407fs	0.929:1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	155	0	0	132	85	39.17	-	-	-	C	131247097	-	C	131247096	7	5	171	1	0	1	1	0	0	0	0	0	10900	291	11	0	1318	0	ODF2	9	131247096	Frame_Shift_Ins	INS	-	TCGA-A8-A07G-01A-11W-A050-09	641712	131247096	9966335	21	10318										
BMS1	0	genome.wustl.edu	37	chr10	43287948	43287948	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tttatttttctaggatggaaGatttgacaaacccagaggat	9	5	1	3			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	10	43287948	43287948	G	A	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	missense	c.787	p.D263N	1.000	pfam_AARP2CN,smart_AARP2CN	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	274	0	0	226	58	20.42	-	-	-	A	43287948	G	A	43287948	3	1	171	1	0	0	0	0	1	0	0	0	1477	942	33	2	809	2	BMS1	10	43287948	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09		43287948	92246799	22	10319										
ADAMTS14	0	genome.wustl.edu	37	chr10	72434406	72434407	+	Frame_Shift_Del	DEL	CC	CC	-													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ctctcccacgtggtgtctggCccagcagcagcctctgcagg							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	10	72434406	72434407	CC	-	DEL	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	frame_shift_del	c.177_178	p.P60fs	0.840:0.994	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	10	0	0	9	7	43.75	-	-	-	-	72434407	CC	-	72434406	7	5	171	1	0	1	0	1	0	0	0	0	259	726	26	0	183	0	ADAMTS14	10	72434406	Frame_Shift_Del	DEL	CC	TCGA-A8-A07G-01A-11W-A050-09	29146458	72434406	63100341	23	10320										
GRID1	0	genome.wustl.edu	37	chr10	87407077	87407077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gggggttggtgcccttggctCggaagtactcatatacagca	14	9	1	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	10	87407077	87407077	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.2075	p.R692Q	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	154	0	0	128	20	13.51	-	-	-	T	87407077	C	T	87407077	3	4	171	1	0	0	0	0	1	0	0	0	6822	884	31	1	970	1	GRID1	10	87407077	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	14972671	87407077	48127670	24	10321										
PSD	0	genome.wustl.edu	37	chr10	104175780	104175781	+	Frame_Shift_Ins	INS	-	-	G													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tcccaggccttacctgagctINSgggggggtccaaggagccat							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	10	104175780	104175781	-	G	INS	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.751_750	p.S250fs	1.000:1.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	36	0	0	30	4	11.76	-	-	-	G	104175781	-	G	104175780	7	5	171	1	0	1	1	0	0	0	0	0	12726	1580	55	0	2383	0	PSD	10	104175780	Frame_Shift_Ins	INS	-	TCGA-A8-A07G-01A-11W-A050-09	16768703	104175780	31358967	25	10322										
OR56A4	0	genome.wustl.edu	37	chr11	6023911	6023911	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	aaaaaactgttcatgatgaaCatctggaggaagcaggctgg	12	6	2	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	11	6023911	6023911	C	A	SNP	OR56A4	ENST00000330728	human	ensembl	69_37n	-1	known	missense	c.468	p.M156I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389	246	0	0	219	75	25.34	-	-	-	A	6023911	C	A	6023911	3	1	171	1	0	0	0	0	1	0	0	0	11208	478	17	4	631	4	OR56A4	11	6023911	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		6023911	128982605	26	10323										
ARHGEF17	0	genome.wustl.edu	37	chr11	73022275	73022275	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cctccatccagcagcgagccCatccttgtagagcagcgggc	11	16	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	11	73022275	73022275	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	silent	c.2592	p.P864	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	19	0	0	11	5	31.25	-	-	-	T	73022275	C	T	73022275	2	4	171	1	0	0	0	0	0	0	0	1	902	581	21	4		4	ARHGEF17	11	73022275	Silent	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	66998364	73022275	61984241	27	10324										
MTNR1B	0	genome.wustl.edu	37	chr11	92714860	92714860	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	atctaccggcgctggcacacCcctctgcacatctgcctcat	7	18	4	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	11	92714860	92714860	C	A	SNP	MTNR1B	ENST00000257068	human	ensembl	69_37n	1	known	silent	c.471	p.T157	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Melatonin_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Melatonin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Mel_1A_rcpt	-	no_errors	MTNR1B	HGNC	ENSG00000134640	222	1	0.45	267	49	15.41	-	-	-	A	92714860	C	A	92714860	2	1	171	1	0	0	0	0	0	0	0	1	10024	610	22	4		4	MTNR1B	11	92714860	Silent	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	19692585	92714860	42291656	28	10325										
DSCAML1	0	genome.wustl.edu	37	chr11	117375739	117375739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ccatcctggttgttgggttgCaccacaaatcgagggggcac	13	11	0	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	11	117375739	117375739	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.2262	p.V754	0.843	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	169	0	0	111	66	37.29	-	-	-	T	117375739	C	T	117375739	2	4	171	1	0	0	0	0	0	0	0	1	4804	697	25	4		4	DSCAML1	11	117375739	Silent	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	24660879	117375739	17630777	29	10326										
KRT6C	0	genome.wustl.edu	37	chr12	52867484	52867484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cactgaaaccccggcggctgCtgctgtggctcctgatggtg	14	13	0	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	12	52867484	52867484	C	T	SNP	KRT6C	ENST00000252250	human	ensembl	69_37n	-1	known	missense	c.38	p.S13N	0.004	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465	48	0	0	32	13	28.89	-	-	-	T	52867484	C	T	52867484	3	4	171	1	0	0	0	0	1	0	0	0	8535	797	28	4	1692	4	KRT6C	12	52867484	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		52867484	80984411	30	10327										
WSCD2	0	genome.wustl.edu	37	chr12	108604055	108604055	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gcctctctgtctaccggctgCagctggcccaggagtcggcc	13	16	2	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	12	108604055	108604055	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	nonsense	c.655	p.Q219*	1.000	smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	68	0	0	43	7	14	-	-	-	T	108604055	C	T	108604055	4	4	171	1	0	0	0	0	0	1	0	0	17504	711	25	4	665	4	WSCD2	12	108604055	Nonsense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	55736571	108604055	25247840	31	10328										
XPO4	0	genome.wustl.edu	37	chr13	21371027	21371027	+	Frame_Shift_Del	DEL	A	A	-													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	aattggtaaggaagtccattAaaaaattaaacaggattgct							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	13	21371027	21371027	A	-	DEL	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	frame_shift_del	c.2492	p.L831fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	79	0	0	66	8	10.81	-	-	-	-	21371027	A	-	21371027	7	5	171	1	0	1	0	1	0	0	0	0	17543	372	13	0	991	0	XPO4	13	21371027	Frame_Shift_Del	DEL	A	TCGA-A8-A07G-01A-11W-A050-09		21371027	93798851	32	10329										
OR4L1	0	genome.wustl.edu	37	chr14	20528300	20528300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tcttctttgtgacattttccCtgatctacggtgctactgtg	8	10	3	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	14	20528300	20528300	C	T	SNP	OR4L1	ENST00000315683	human	ensembl	69_37n	1	known	silent	c.97	p.L33	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4L1	HGNC	ENSG00000176246	101	0	0	117	47	28.66	-	-	-	T	20528300	C	T	20528300	2	4	171	1	0	0	0	0	0	0	0	1	11147	680	24	4		4	OR4L1	14	20528300	Silent	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		20528300	86821240	33	10330										
CHD8	0	genome.wustl.edu	37	chr14	21871620	21871620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ctcttttcttacctcctctgGattaaataatcctctaggat	4	11	4	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	14	21871620	21871620	G	A	SNP	CHD8	ENST00000555935	human	ensembl	69_37n	-1	novel	missense	c.1186	p.P396S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	CHD8	HGNC	ENSG00000100888	33	0	0	43	14	24.56	-	-	-	A	21871620	G	A	21871620	3	1	171	1	0	0	0	0	1	0	0	0	3360	1164	41	2	4323	2	CHD8	14	21871620	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	1343320	21871620	85477920	34	10331										
SPTB	0	genome.wustl.edu	37	chr14	65253821	65253821	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	acgcagtagttgtgcactcgGagggctgagtccacagcctc	13	12	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	14	65253821	65253821	G	A	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	silent	c.2862	p.L954	0.989	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	24	0	0	17	13	43.33	-	-	-	A	65253821	G	A	65253821	2	1	171	1	0	0	0	0	0	0	0	1	15209	1161	41	2		2	SPTB	14	65253821	Silent	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	43382201	65253821	42095719	35	10332										
SHC4	0	genome.wustl.edu	37	chr15	49148314	49148314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ggcatggctatcaatatgcaCctcctcactgtgaaggaaaa	9	10	2	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	15	49148314	49148314	C	A	SNP	SHC4	ENST00000332408	human	ensembl	69_37n	-1	known	missense	c.1078	p.V360L	0.917	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	112	0	0	116	45	27.95	-	-	-	A	49148314	C	A	49148314	3	1	171	1	0	0	0	0	1	0	0	0	14362	507	18	4	834	4	SHC4	15	49148314	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		49148314	53383078	36	10333										
OAZ2	0	genome.wustl.edu	37	chr15	64995230	64995230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cctgggccgggccgttacctGtcctgggtgtttatcatcct	12	13	1	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	15	64995230	64995230	G	T	SNP	OAZ2	ENST00000326005	human	ensembl	69_37n	-1	known	missense	c.18	p.D6E	1.000	NULL	pfam_ODC_AZ,superfamily_Acyl_CoA_acyltransferase	-	no_errors	OAZ2	HGNC	ENSG00000180304	184	0	0	235	41	14.86	-	-	-	T	64995230	G	T	64995230	3	4	171	1	0	0	0	0	1	0	0	0	10878	1368	48	4	572	4	OAZ2	15	64995230	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	15846916	64995230	37536162	37	10334										
NLRC3	0	genome.wustl.edu	37	chr16	3611702	3611702	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ggtcccctgggtctgtgttaCctgatcttctgaatgcgaca	11	11	3	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	16	3611702	3611702	C	A	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	splice_site	c.2156+1	e4+1	1.000	-	-	-	no_errors	NLRC3	HGNC	ENSG00000167984	21	0	0	12	6	33.33	-	-	-	A	3611702	C	A	3611702	5	1	171	1	0	0	0	0	0	0	1	0	10540	521	18	4	1242	4	NLRC3	16	3611702	Splice_Site	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		3611702	86743051	38	10335										
TOX3	0	genome.wustl.edu	37	chr16	52473645	52473645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gtggagccccaatgttcgagGgcatgttggctgcaatggtg	16	8	0	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	16	52473645	52473645	G	A	SNP	TOX3	ENST00000219746	human	ensembl	69_37n	-1	known	missense	c.1223	p.P408L	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX3	HGNC	ENSG00000103460	343	0	0	264	83	23.92	-	-	-	A	52473645	G	A	52473645	3	1	171	1	0	0	0	0	1	0	0	0	16475	1232	43	4	511	4	TOX3	16	52473645	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	48861943	52473645	37881108	39	10336										
SREBF1	0	genome.wustl.edu	37	chr17	17719341	17719341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gggcactgctcaggaagaagCgctgtaggggagggtactgg	19	7	1	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	17	17719341	17719341	C	T	SNP	SREBF1	ENST00000355815	human	ensembl	69_37n	-1	known	missense	c.2306	p.R769H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF1	HGNC	ENSG00000072310	11	0	0	2	4	66.67	-	-	-	T	17719341	C	T	17719341	3	4	171	1	0	0	0	0	1	0	0	0	15232	782	27	1	1259	1	SREBF1	17	17719341	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		17719341	63475869	40	10337										
MPP3	0	genome.wustl.edu	37	chr17	41888564	41888564	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tctcatggctctttcggggcCtggtggtatcttttaaagaa	11	8	3	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	17	41888564	41888564	C	G	SNP	MPP3	ENST00000398389	human	ensembl	69_37n	-1	known	missense	c.1265	p.R422T	0.997	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP3	HGNC	ENSG00000161647	104	0	0	137	36	20.81	-	-	-	G	41888564	C	G	41888564	3	3	171	1	0	0	0	0	1	0	0	0	9807	681	24	4	508	4	MPP3	17	41888564	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09	24169223	41888564	39306646	41	10338										
FAM104A	0	genome.wustl.edu	37	chr17	71205900	71205901	+	Frame_Shift_Ins	INS	-	-	G													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gctcccaccactgtcactgcINSctgaagactggaaggaagaa							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	17	71205900	71205901	-	G	INS	FAM104A	ENST00000405159	human	ensembl	69_37n	-1	known	frame_shift_ins	c.392_391	p.G131fs	1.000:0.972	NULL	NULL	-	no_errors	FAM104A	HGNC	ENSG00000133193	28	0	0	40	42	51.22	-	-	-	G	71205901	-	G	71205900	7	5	171	1	0	1	1	0	0	0	0	0	5425	739	26	0	235	0	FAM104A	17	71205900	Frame_Shift_Ins	INS	-	TCGA-A8-A07G-01A-11W-A050-09	29317336	71205900	9989310	42	10339										
THEG	0	genome.wustl.edu	37	chr19	362223	362223	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gaggccaggcctgggttgatCacacttttctggtgatgctt	13	9	2	2			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	19	362223	362223	C	G	SNP	THEG	ENST00000342640	human	ensembl	69_37n	-1	known	missense	c.1117	p.D373H	0.144	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549	170	0	0	259	31	10.69	-	-	-	G	362223	C	G	362223	3	3	171	1	0	0	0	0	1	0	0	0	15952	826	29	2	26	2	THEG	19	362223	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		362223	58766760	43	10340										
ZNRF4	0	genome.wustl.edu	37	chr19	5456459	5456460	+	Frame_Shift_Ins	INS	-	-	T													0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	tggatgagtatgaggagggcINSgaccaactcaagatcctgcc							TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	19	5456459	5456460	-	T	INS	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	frame_shift_ins	c.957_958	p.D319fs	0.705:0.790	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	110	0	0	155	122	44.04	-	-	-	T	5456460	-	T	5456459	7	5	171	1	0	1	1	0	0	0	0	0	18307	755	27	0	959	0	ZNRF4	19	5456459	Frame_Shift_Ins	INS	-	TCGA-A8-A07G-01A-11W-A050-09	5094236	5456459	53672524	44	10341										
IL28A	0	genome.wustl.edu	37	chr19	39759482	39759482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ggagctgcaggcctttaagaGggccaaagatgccttagtga	14	8	0	3			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	19	39759482	39759482	G	T	SNP	IL28A	ENST00000331982	human	ensembl	69_37n	1	known	missense	c.176	p.R59M	0.560	NULL	NULL	-	no_errors	IL28A	HGNC	ENSG00000183709	134	1	0.74	132	31	19.02	-	-	-	T	39759482	G	T	39759482	3	4	171	1	0	0	0	0	1	0	0	0	7736	1000	35	4	182	4	IL28A	19	39759482	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	34303023	39759482	19369501	45	10342										
KCNG1	0	genome.wustl.edu	37	chr20	49621081	49621081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	cgtacaggatgcgcagcgccCgcagcacgcgcagcaccagc	13	17	0	0			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	20	49621081	49621081	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	69_37n	-1	known	missense	c.1037	p.R346Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559	39	0	0	51	16	23.88	-	-	-	T	49621081	C	T	49621081	3	4	171	1	0	0	0	0	1	0	0	0	8081	652	23	1	508	1	KCNG1	20	49621081	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		49621081	13404439	46	10343										
VCX	0	genome.wustl.edu	37	chrX	7811288	7811288	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gggacctccggccaaggccaCggaggcaggaaagaggaagt	17	10	0	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	X	7811288	7811288	C	G	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	missense	c.44	p.T15R	0.000	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	39	0	0	47	7	12.96	-	-	-	G	7811288	C	G	7811288	3	3	171	1	0	0	0	0	1	0	0	0	17239	536	19	3	46	3	VCX	23	7811288	Missense_Mutation	SNP	C	TCGA-A8-A07G-01A-11W-A050-09		7811288	147459272	47	10344										
AWAT1	0	genome.wustl.edu	37	chrX	69459689	69459689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	gttccagagctgcttccgccGtatctttggtttctactgtt	9	11	2	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	X	69459689	69459689	G	A	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	1	known	missense	c.737	p.R246H	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	367	0	0	287	87	23.26	-	-	-	A	69459689	G	A	69459689	3	1	171	1	0	0	0	0	1	0	0	0	1238	1145	40	1	759	1	AWAT1	23	69459689	Missense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	61648401	69459689	85810871	48	10345										
RAB40A	0	genome.wustl.edu	37	chrX	102755366	102755366	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	2	1	0.622252747252747	1.45192307692308	0.395979020979021	1	1	0	ctcaatcttcttaatccatcGatccataccctcgaaagacc	3	15	3	1			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc	a50c80c4-329f-456f-b86c-c97d2443ab75	X	102755366	102755366	G	A	SNP	RAB40A	ENST00000304236	human	ensembl	69_37n	-1	known	nonsense	c.319	p.R107*	0.996	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476	132	0	0	92	19	17.12	-	-	-	A	102755366	G	A	102755366	4	1	171	1	0	0	0	0	0	1	0	0	13022	1066	37	1	518	1	RAB40A	23	102755366	Nonsense_Mutation	SNP	G	TCGA-A8-A07G-01A-11W-A050-09	33295677	102755366	52515194	49	10346										
ARID1A	0	genome.wustl.edu	37	chr1	27106136	27106136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cactatggatgacatgttgtCtactcggtctagcaccttga	9	10	2	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	27106136	27106136	C	G	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.5747	p.S1916C	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	230	0	0	115	62	34.83	-	-	-	G	27106136	C	G	27106136	3	3	172	1	0	0	0	0	1	0	0	0	915	913	32	2	5825	2	ARID1A	1	27106136	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09		27106136	222144485	1	10347										
KIRREL	0	genome.wustl.edu	37	chr1	158047872	158047872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	ctctctgacgacgcctcttaCgagtgccaggccacggaggc	12	15	2	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	158047872	158047872	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	silent	c.294	p.Y98	0.915	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	120	0	0	109	35	24.31	-	-	-	T	158047872	C	T	158047872	2	4	172	1	0	0	0	0	0	0	0	1	8377	547	19	1		1	KIRREL	1	158047872	Silent	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	130941736	158047872	91202749	2	10348										
NAV1	0	genome.wustl.edu	37	chr1	201687769	201687769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	caagctcagccatatctcccGcctggagctggtcgaatccc	9	16	2	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	201687769	201687769	G	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.1112	p.R371L	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	83	0	0	16	39	70.91	-	-	-	T	201687769	G	T	201687769	3	4	172	1	0	0	0	0	1	0	0	0	10255	1087	38	3	1122	3	NAV1	1	201687769	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	43639897	201687769	47562852	3	10349										
ADORA1	0	genome.wustl.edu	37	chr1	203098133	203098133	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cgtgtcgctggcggtggctgAtgtggccgtgggtgccctgg	20	10	0	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	203098133	203098133	A	T	SNP	ADORA1	ENST00000309502	human	ensembl	69_37n	1	known	missense	c.164	p.D55V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adenosn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485	65	0	0	170	20	10.26	-	-	-	T	203098133	A	T	203098133	3	4	172	1	0	0	0	0	1	0	0	0	326	333	12	5	166	5	ADORA1	1	203098133	Missense_Mutation	SNP	A	TCGA-A8-A07I-01A-11W-A019-09	1410364	203098133	46152488	4	10350										
CR1	0	genome.wustl.edu	37	chr1	207669639	207669639	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gcctcttctccaagaagcccGgagcctgtcgggccgccggc	13	17	2	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	207669639	207669639	G	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	silent	c.27	p.P9	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	30	0	0	21	5	19.23	-	-	-	A	207669639	G	A	207669639	2	1	172	1	0	0	0	0	0	0	0	1	3870	1103	39	1		1	CR1	1	207669639	Silent	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	4571506	207669639	41580982	5	10351										
TP53BP2	0	genome.wustl.edu	37	chr1	223991057	223991057	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	atcctgccgttcttgagcatCtctagctgcctggtcagttc	9	13	3	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	1	223991057	223991057	C	G	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.747	p.E249D	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	102	0	0	120	56	31.82	-	-	-	G	223991057	C	G	223991057	3	3	172	1	0	0	0	0	1	0	0	0	16480	912	32	2	2705	2	TP53BP2	1	223991057	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	16321418	223991057	25259564	6	10352										
KIDINS220	0	genome.wustl.edu	37	chr2	8871022	8871022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	ttgggttgggactggaactaGgcctcaaaatgacttgagaa	13	6	1	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	2	8871022	8871022	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.5144	p.P1715L	0.966	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	116	0	0	79	9	10.23	-	-	-	A	8871022	G	A	8871022	3	1	172	1	0	0	0	0	1	0	0	0	8323	1000	35	4	175	4	KIDINS220	2	8871022	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		8871022	234328351	7	10353										
ZDBF2	0	genome.wustl.edu	37	chr2	207171377	207171377	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gccgttcttctctgagttctGattctccggcttctctttat	7	12	5	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	2	207171377	207171377	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.2125	p.D709Y	0.962	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	171	0	0	90	52	36.62	-	-	-	T	207171377	G	T	207171377	3	4	172	1	0	0	0	0	1	0	0	0	17695	1290	45	2	2135	2	ZDBF2	2	207171377	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	198300355	207171377	36027996	8	10354										
PLK2	0	genome.wustl.edu	37	chr5	57753376	57753378	+	In_Frame_Del	DEL	CAG	CAG	-													0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tccttgtttgttgaggacttCaggagagagataatttgggg							TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	5	57753376	57753378	CAG	-	DEL	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	in_frame_del	c.748_746	p.PE249in_frame_delQ	1.000:0.947:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	65	0	0	20	3	12	-	-	-	-	57753378	CAG	-	57753376	7	5	172	1	0	1	0	1	0	0	0	0	12170	835	29	0	1345	0	PLK2	5	57753376	In_Frame_Del	DEL	CAG	TCGA-A8-A07I-01A-11W-A019-09		57753376	123161884	9	10355										
PCDHB16	0	genome.wustl.edu	37	chr5	140562339	140562339	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gcaaggccaggatcatttccCaggggaacaaacagcatttg	11	10	1	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	5	140562339	140562339	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	nonsense	c.205	p.Q69*	0.003	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	99	0	0	39	27	40.91	-	-	-	T	140562339	C	T	140562339	4	4	172	1	0	0	0	0	0	1	0	0	11614	595	21	4	207	4	PCDHB16	5	140562339	Nonsense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	82808963	140562339	40352921	10	10356										
PCDHB16	0	genome.wustl.edu	37	chr5	140564292	140564292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tgtgcaggaggagcagggcgGcctcggtgggccgctgctcg	20	11	0	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	5	140564292	140564292	G	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.2158	p.A720S	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	60	0	0	25	10	28.57	-	-	-	T	140564292	G	T	140564292	3	4	172	1	0	0	0	0	1	0	0	0	11614	1203	42	4	2160	4	PCDHB16	5	140564292	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	1953	140564292	40350968	11	10357										
TBC1D22B	0	genome.wustl.edu	37	chr6	37254787	37254787	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gccttctctttttcagattcAcattgacattccaaggacga	6	11	3	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	6	37254787	37254787	A	G	SNP	TBC1D22B	ENST00000373491	human	ensembl	69_37n	1	known	missense	c.806	p.H269R	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	177	0	0	99	35	26.12	-	-	-	G	37254787	A	G	37254787	3	3	172	1	0	0	0	0	1	0	0	0	15704	159	6	5	832	5	TBC1D22B	6	37254787	Missense_Mutation	SNP	A	TCGA-A8-A07I-01A-11W-A019-09		37254787	133860280	12	10358										
AOAH	0	genome.wustl.edu	37	chr7	36661342	36661342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cctgggtacactgactcgtcGctgtcattacagtctctccc	8	15	2	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	7	36661342	36661342	G	A	SNP	AOAH	ENST00000258749	human	ensembl	69_37n	-1	known	silent	c.627	p.S209	0.000	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	206	0	0	83	47	36.15	-	-	-	A	36661342	G	A	36661342	2	1	172	1	0	0	0	0	0	0	0	1	727	1078	38	1		1	AOAH	7	36661342	Silent	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		36661342	122477321	13	10359										
CDK14	0	genome.wustl.edu	37	chr7	90377067	90377067	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	ctaggggaaggatcttatgcTacagtatacaaagggaaaag	12	5	1	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	7	90377067	90377067	T	C	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	silent	c.441	p.A147	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	348	0	0	52	68	56.67	-	-	-	C	90377067	T	C	90377067	2	2	172	1	0	0	0	0	0	0	0	1	3159	1509	53	5		5	CDK14	7	90377067	Silent	SNP	T	TCGA-A8-A07I-01A-11W-A019-09	53715725	90377067	68761596	14	10360										
PIK3CG	0	genome.wustl.edu	37	chr7	106523500	106523500	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	atgatcgagattgtgaaagaCgccacgacaattgccaaaat	9	8	0	4			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	7	106523500	106523500	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	silent	c.2652	p.D884	0.571	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	395	1	0.25	110	105	48.84	-	-	-	T	106523500	C	T	106523500	2	4	172	1	0	0	0	0	0	0	0	1	11990	535	19	1		1	PIK3CG	7	106523500	Silent	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	16146433	106523500	52615163	15	10361										
NEFM	0	genome.wustl.edu	37	chr8	24774866	24774866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	aagaaaaggaagaggaacccGaagctgaagaagaagaagta	13	4	0	6			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	8	24774866	24774866	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	missense	c.1498	p.E500K	0.958	NULL	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	48	0	0	19	15	44.12	-	-	-	A	24774866	G	A	24774866	3	1	172	1	0	0	0	0	1	0	0	0	10388	1059	37	1	1508	1	NEFM	8	24774866	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		24774866	121589156	16	10362										
ALDH1B1	0	genome.wustl.edu	37	chr9	38395914	38395914	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gcaagaagaccttcccgacgGtcaaccctaccaccggggag	11	15	1	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	9	38395914	38395914	G	T	SNP	ALDH1B1	ENST00000377698	human	ensembl	69_37n	1	known	missense	c.169	p.V57F	0.567	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1B1	HGNC	ENSG00000137124	85	0	0	42	15	26.32	-	-	-	T	38395914	G	T	38395914	3	4	172	1	0	0	0	0	1	0	0	0	493	1261	44	4	171	4	ALDH1B1	9	38395914	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		38395914	102817517	17	10363										
ARHGAP12	0	genome.wustl.edu	37	chr10	32197496	32197496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gatctctgaagatgcaaactCtgcattattttcgtggagtt	9	7	2	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	10	32197496	32197496	C	G	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.288	p.Q96H	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	246	0	0	93	85	47.75	-	-	-	G	32197496	C	G	32197496	3	3	172	1	0	0	0	0	1	0	0	0	867	912	32	2	2324	2	ARHGAP12	10	32197496	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09		32197496	103337251	18	10364										
MUC6	0	genome.wustl.edu	37	chr11	1016078	1016079	+	Frame_Shift_Ins	INS	-	-	G													0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	atgcaatggtgctggaggctINSaggtggctggatggggtggg							TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	11	1016078	1016079	-	G	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6723_6722	p.A2242fs	0.000:0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	14	0	0	14	8	36.36	-	-	-	G	1016079	-	G	1016078	7	5	172	1	0	1	1	0	0	0	0	0	10052	1509	53	0	608	0	MUC6	11	1016078	Frame_Shift_Ins	INS	-	TCGA-A8-A07I-01A-11W-A019-09		1016078	133990438	19	10365										
SPON1	0	genome.wustl.edu	37	chr11	14279316	14279316	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gtccccatggtccgcctgcaGctcctccacctgtgacaaag	9	17	0	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	11	14279316	14279316	G	C	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	32	0	0	16	8	33.33	-	-	-	C	14279316	G	C	14279316	1	2	172	0	1	0	0	0	0	0	0	0	15173	971	34	4		4	SPON1	11	14279316	RNA	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	13263238	14279316	120727200	20	10366										
QSER1	0	genome.wustl.edu	37	chr11	32954676	32954676	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	ccgacccagaattatatttcTatgcattcttcccaaaatgt	4	11	2	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	11	32954676	32954676	T	C	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	silent	c.1485	p.S495	0.648	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	236	1	0.42	111	81	42.19	-	-	-	C	32954676	T	C	32954676	2	2	172	1	0	0	0	0	0	0	0	1	12965	1509	53	5		5	QSER1	11	32954676	Silent	SNP	T	TCGA-A8-A07I-01A-11W-A019-09	18675360	32954676	102051840	21	10367										
AHNAK	0	genome.wustl.edu	37	chr11	62284301	62284301	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tgtcattgctagaagaggagGacagtcgggacttcttagag	14	6	2	3			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	11	62284301	62284301	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.17588	p.S5863F	0.999	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	384	0	0	153	86	35.98	-	-	-	A	62284301	G	A	62284301	3	1	172	1	0	0	0	0	1	0	0	0	414	1174	41	2	204	2	AHNAK	11	62284301	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	29329625	62284301	72722215	22	10368										
GUCY2C	0	genome.wustl.edu	37	chr12	14839103	14839103	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	agtattacttactacatctgGaaggtggagtatgtacatga	10	5	1	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	12	14839103	14839103	G	C	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.387	p.F129L	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	45	0	0	29	10	25.64	-	-	-	C	14839103	G	C	14839103	3	2	172	1	0	0	0	0	1	0	0	0	6947	1165	41	2	2934	2	GUCY2C	12	14839103	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		14839103	119012792	23	10369										
TRAFD1	0	genome.wustl.edu	37	chr12	112578753	112578753	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tggcaactgtggtcgcaatgTccttgtgaaagatctgaaga	12	7	1	4			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	12	112578753	112578753	T	G	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.368	p.V123G	1.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	98	0	0	77	31	28.7	-	-	-	G	112578753	T	G	112578753	3	3	172	1	0	0	0	0	1	0	0	0	16543	1667	58	5	382	5	TRAFD1	12	112578753	Missense_Mutation	SNP	T	TCGA-A8-A07I-01A-11W-A019-09	97739650	112578753	21273142	24	10370										
RIMBP2	0	genome.wustl.edu	37	chr12	130935822	130935822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gaggctccggcctgtcaccaGgctgcggaaggggccggata	17	12	1	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	12	130935822	130935822	G	T	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.371	p.P124H	0.022	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	45	0	0	23	7	23.33	-	-	-	T	130935822	G	T	130935822	3	4	172	1	0	0	0	0	1	0	0	0	13447	1000	35	4	2847	4	RIMBP2	12	130935822	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	18357069	130935822	2916073	25	10371										
BRCA2	0	genome.wustl.edu	37	chr13	32912555	32912555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gtattcataaagatgaaacgGacttgctatttactgatcag	8	6	2	3			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	13	32912555	32912555	G	T	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.4063	p.D1355Y	0.011	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	100	0	0	60	20	24.69	-	-	-	T	32912555	G	T	32912555	3	4	172	1	0	0	0	0	1	0	0	0	1507	1174	41	2	4101	2	BRCA2	13	32912555	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		32912555	82257323	26	10372										
SCEL	0	genome.wustl.edu	37	chr13	78182240	78182240	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tgacccctgaagtaaagagaAgtaaccaagggtgaggacta	12	7	0	4			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	13	78182240	78182240	A	T	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.1207	p.S403C	0.014	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	113	1	0.88	106	25	19.08	-	-	-	T	78182240	A	T	78182240	3	4	172	1	0	0	0	0	1	0	0	0	13975	72	3	5	1281	5	SCEL	13	78182240	Missense_Mutation	SNP	A	TCGA-A8-A07I-01A-11W-A019-09	45269685	78182240	36987638	27	10373										
SLC13A2	0	genome.wustl.edu	37	chr17	26818553	26818553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cccagtgcatgagcctgtgcGtgtgctactccgccagcatc	11	15	0	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	17	26818553	26818553	G	A	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	missense	c.820	p.V274M	0.878	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	71	0	0	25	13	34.21	-	-	-	A	26818553	G	A	26818553	3	1	172	1	0	0	0	0	1	0	0	0	14481	1145	40	1	838	1	SLC13A2	17	26818553	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		26818553	54376657	28	10374										
GGA3	0	genome.wustl.edu	37	chr17	73239562	73239562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	atgtggtaggcgtctttgatCtttgcttcttctggcagggc	13	8	4	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	17	73239562	73239562	C	T	SNP	GGA3	ENST00000584243	human	ensembl	69_37n	-1	known	missense	c.388	p.D130N	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GGA3	HGNC	ENSG00000125447	96	0	0	69	32	31.68	-	-	-	T	73239562	C	T	73239562	3	4	172	1	0	0	0	0	1	0	0	0	6406	912	32	2	1921	2	GGA3	17	73239562	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	46421009	73239562	7955648	29	10375										
RECQL5	0	genome.wustl.edu	37	chr17	73654533	73654533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cttggcaatattccaatgggCgacaaacctgtaggatccaa	9	10	0	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	17	73654533	73654533	C	T	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.994	p.A332T	0.989	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	98	0	0	168	168	49.85	-	-	-	T	73654533	C	T	73654533	3	4	172	1	0	0	0	0	1	0	0	0	13286	768	27	1	2124	1	RECQL5	17	73654533	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	414971	73654533	7540677	30	10376										
TNFRSF11A	0	genome.wustl.edu	37	chr18	60017101	60017101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	acagtgtatgtctgccctgtGgcccggatgaatacttggat	12	9	1	1			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	18	60017101	60017101	G	A	SNP	TNFRSF11A	ENST00000586569	human	ensembl	69_37n	1	known	missense	c.214	p.G72S	1.000	smart_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655	231	0	0	179	68	27.53	-	-	-	A	60017101	G	A	60017101	3	1	172	1	0	0	0	0	1	0	0	0	16379	1348	47	4	224	4	TNFRSF11A	18	60017101	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		60017101	18060147	31	10377										
MUC16	0	genome.wustl.edu	37	chr19	8997511	8997511	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	gtgatggtgaagttgagagtGaatagcaccaggagagggct	17	4	0	5			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	19	8997511	8997511	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.40911	p.F13637L	0.001	pfam_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	422	0	0	331	113	25.39	-	-	-	T	8997511	G	T	8997511	3	4	172	1	0	0	0	0	1	0	0	0	10045	1281	45	2	2716	2	MUC16	19	8997511	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		8997511	50131472	32	10378										
PNMAL1	0	genome.wustl.edu	37	chr19	46973388	46973388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	tcgccatgggcttcttcaaaGccaactcctccttattcaca	5	15	3	0			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	19	46973388	46973388	G	A	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	missense	c.905	p.A302V	0.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	152	0	0	69	47	40.17	-	-	-	A	46973388	G	A	46973388	3	1	172	1	0	0	0	0	1	0	0	0	12231	971	34	4	444	4	PNMAL1	19	46973388	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09	37975877	46973388	12155595	33	10379										
KLHL34	0	genome.wustl.edu	37	chrX	21675572	21675572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cacagagccccagggcctcaGtgacctgcaggtagctggcg	14	14	1	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	X	21675572	21675572	G	T	SNP	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	missense	c.335	p.T112N	0.743	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	13	0	0	3	6	66.67	-	-	-	T	21675572	G	T	21675572	3	4	172	1	0	0	0	0	1	0	0	0	8440	1029	36	4	1603	4	KLHL34	23	21675572	Missense_Mutation	SNP	G	TCGA-A8-A07I-01A-11W-A019-09		21675572	133594988	34	10380										
CXorf36	0	genome.wustl.edu	37	chrX	45013241	45013241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	cgccgaacatgcctgcatcaAtgtgggtgaagtagaagaaa	12	8	1	3			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	X	45013241	45013241	A	G	SNP	CXorf36	ENST00000398000	human	ensembl	69_37n	-1	known	missense	c.875	p.I292T	0.328	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	76	0	0	50	29	36.71	-	-	-	G	45013241	A	G	45013241	3	3	172	1	0	0	0	0	1	0	0	0	4137	101	4	5	434	5	CXorf36	23	45013241	Missense_Mutation	SNP	A	TCGA-A8-A07I-01A-11W-A019-09	23337669	45013241	110257319	35	10381										
TRPC5	0	genome.wustl.edu	37	chrX	111078326	111078326	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	aatacagaccagaagagtgaCtgaagagtctcaaagagcct	10	8	1	7			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	X	111078326	111078326	C	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.1719	p.Q573H	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	491	1	0.2	412	82	16.6	-	-	-	A	111078326	C	A	111078326	3	1	172	1	0	0	0	0	1	0	0	0	16678	564	20	4	1222	4	TRPC5	23	111078326	Missense_Mutation	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	66065085	111078326	44192234	36	10382										
XIAP	0	genome.wustl.edu	37	chrX	123019797	123019797	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	aattgcagatttatcaacggCttttatcttgaaaatagtgc	7	6	2	2			TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	X	123019797	123019797	C	A	SNP	XIAP	ENST00000355640	human	ensembl	69_37n	1	known	silent	c.285	p.G95	0.834	smart_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	142	0	0	103	47	31.33	-	-	-	A	123019797	C	A	123019797	2	1	172	1	0	0	0	0	0	0	0	1	17525	784	28	4		4	XIAP	23	123019797	Silent	SNP	C	TCGA-A8-A07I-01A-11W-A019-09	11941471	123019797	32250763	37	10383										
F8	0	genome.wustl.edu	37	chrX	154157239	154157240	+	Frame_Shift_Ins	INS	-	-	T													0.105263157894737	4	0.622711983633638	1.42995169082126	3.86086956521739	0.494983277591973	0.545454545454546	1	0	atcctttttcttaaaagctgINSttttttctggtgacttctct							TCGA-A8-A07I-01A-11W-A019-09	TCGA-A8-A07I-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7718c3f0-1c90-4940-bc30-ea4f417851bb	cca486f4-dbe7-4629-b5bc-bce1d97f9bfc	X	154157239	154157240	-	T	INS	F8	ENST00000360256	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4826_4825	p.T1609fs	0.000:0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	770	0	0	459	182	28.39	-	-	-	T	154157240	-	T	154157239	7	5	172	1	0	1	1	0	0	0	0	0	5387	1377	48	0	2309	0	F8	23	154157239	Frame_Shift_Ins	INS	-	TCGA-A8-A07I-01A-11W-A019-09	31137442	154157239	1113321	38	10384										
CCNL2	0	genome.wustl.edu	37	chr1	1325651	1325652	+	Frame_Shift_Ins	INS	-	-	G													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ccccgaggtaccatccagcaINScctgtgtgcccccaggcaac							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	1325651	1325652	-	G	INS	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	frame_shift_ins	c.965_964	p.V322fs	0.000:0.000	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	54	0	0	58	37	38.95	-	-	-	G	1325652	-	G	1325651	7	5	173	1	0	1	1	0	0	0	0	0	2961	159	6	0	613	0	CCNL2	1	1325651	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09		1325651	247924970	1	10385										
ARID1A	0	genome.wustl.edu	37	chr1	27094455	27094456	+	Frame_Shift_Del	DEL	TA	TA	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ctctggacctctatcgcctcTatgtgtctgtgaaggagatt							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	27094455	27094456	TA	-	DEL	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_del	c.3163_3164	p.Y1055fs	1.000:1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	123	0	0	101	43	29.86	-	-	-	-	27094456	TA	-	27094455	7	5	173	1	0	1	0	1	0	0	0	0	915	1522	53	0	3205	0	ARID1A	1	27094455	Frame_Shift_Del	DEL	TA	TCGA-A8-A07J-01A-11W-A019-09	25768804	27094455	222156166	2	10386										
CRTC2	0	genome.wustl.edu	37	chr1	153927365	153927365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	atatgtggcgggtgtatcggCgaagtggggacaccattctt	15	7	1	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	153927365	153927365	C	T	SNP	CRTC2	ENST00000368633	human	ensembl	69_37n	-1	known	missense	c.356	p.R119H	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741	72	0	0	59	23	27.71	-	-	-	T	153927365	C	T	153927365	3	4	173	1	0	0	0	0	1	0	0	0	3930	768	27	1	1773	1	CRTC2	1	153927365	Missense_Mutation	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	126832910	153927365	95323256	3	10387										
KIFAP3	0	genome.wustl.edu	37	chr1	170004659	170004659	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gacactttgcttccagtcttCtctcaggacccttgctaatg	7	13	3	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	170004659	170004659	C	T	SNP	KIFAP3	ENST00000361580	human	ensembl	69_37n	-1	known	missense	c.553	p.E185K	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945	137	0	0	55	24	30.38	-	-	-	T	170004659	C	T	170004659	3	4	173	1	0	0	0	0	1	0	0	0	8363	922	32	2	1885	2	KIFAP3	1	170004659	Missense_Mutation	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	16077294	170004659	79245962	4	10388										
PREB	0	genome.wustl.edu	37	chr2	27356186	27356186	+	Frame_Shift_Del	DEL	A	A	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gctgctcccttcctttgtcgAggcccctgctccttggaacc							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	2	27356186	27356186	A	-	DEL	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	frame_shift_del	c.345	p.R116fs	0.918	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	87	0	0	58	36	37.11	-	-	-	-	27356186	A	-	27356186	7	5	173	1	0	1	0	1	0	0	0	0	12551	291	11	0	936	0	PREB	2	27356186	Frame_Shift_Del	DEL	A	TCGA-A8-A07J-01A-11W-A019-09		27356186	215843187	5	10389										
CADPS	0	genome.wustl.edu	37	chr3	62578366	62578366	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cctgtgctctctgtgaacagCttcaccttcacagctggcag	9	14	3	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	3	62578366	62578366	C	T	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	silent	c.1383	p.K461	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	220	0	0	90	42	31.82	-	-	-	T	62578366	C	T	62578366	2	4	173	1	0	0	0	0	0	0	0	1	2595	796	28	4		4	CADPS	3	62578366	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09		62578366	135444064	6	10390										
SLC7A14	0	genome.wustl.edu	37	chr3	170201117	170201117	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ccttacctgaaaaggagcccGtcaccagccatggcataaat	8	13	1	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	3	170201117	170201117	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	silent	c.1101	p.D367	1.000	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	91	0	0	121	25	17.01	-	-	-	A	170201117	G	A	170201117	2	1	173	1	0	0	0	0	0	0	0	1	14785	1136	40	1		1	SLC7A14	3	170201117	Silent	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	107622751	170201117	27821313	7	10391										
PCDHGB3	0	genome.wustl.edu	37	chr5	140750139	140750139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	acctggggtttggcgtggggGatttacctactaggaacctg	15	8	0	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	5	140750139	140750139	G	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	missense	c.178	p.D60Y	0.007	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	104	0	0	44	9	16.98	-	-	-	T	140750139	G	T	140750139	3	4	173	1	0	0	0	0	1	0	0	0	11637	1174	41	2	180	2	PCDHGB3	5	140750139	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		140750139	40165121	8	10392										
FTSJD2	0	genome.wustl.edu	37	chr6	37427448	37427448	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cgcaagggtgtccattttctGatggctgatggggtaggtta	15	6	1	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	6	37427448	37427448	G	A	SNP	FTSJD2	ENST00000373451	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_Rsp5_WWP,pfscan_G_patch_dom	-	no_errors	FTSJD2	HGNC	ENSG00000137200	634	0	0	404	128	24.06	-	-	-	A	37427448	G	A	37427448	2	1	173	1	0	0	0	0	0	0	0	1	6140	1277	45	2		2	FTSJD2	6	37427448	Silent	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		37427448	133687619	9	10393										
MED23	0	genome.wustl.edu	37	chr6	131911508	131911508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gctgaaatctttgtaaaaatGgtccaacaagatggtataca	8	6	1	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	6	131911508	131911508	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.3779	p.P1260L	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	134	0	0	36	13	26.53	-	-	-	A	131911508	G	A	131911508	3	1	173	1	0	0	0	0	1	0	0	0	9512	1348	47	4	364	4	MED23	6	131911508	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	94484060	131911508	39203559	10	10394										
MEPCE	0	genome.wustl.edu	37	chr7	100029247	100029248	+	Frame_Shift_Ins	INS	-	-	C													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cagccggggtcccatcgctgINSccccccaagtgcccttggat							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	7	100029247	100029248	-	C	INS	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	frame_shift_ins	c.1606_1607	p.Q538fs	1.000:1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	11	0	0	4	2	33.33	-	-	-	C	100029248	-	C	100029247	7	5	173	1	0	1	1	0	0	0	0	0	9548	1319	46	0	1608	0	MEPCE	7	100029247	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09		100029247	59109416	11	10395										
OR2A1	0	genome.wustl.edu	37	chr7	144015841	144015841	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tgcgtgttcttcctggtgggGccacccagcctggtgcttgt	14	12	1	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	7	144015841	144015841	G	A	SNP	OR2A1	ENST00000408951	human	ensembl	69_37n	1	known	silent	c.624	p.G208	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2A1	HGNC	ENSG00000221970	14	0	0	13	5	27.78	-	-	-	A	144015841	G	A	144015841	2	1	173	1	0	0	0	0	0	0	0	1	11047	1190	42	4		4	OR2A1	7	144015841	Silent	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	43986594	144015841	15122822	12	10396										
KIF13B	0	genome.wustl.edu	37	chr8	29006116	29006117	+	Frame_Shift_Ins	INS	-	-	C													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tgctgcccagggccttcatgINSgtgacctccatctgtgcgta							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	8	29006116	29006117	-	C	INS	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1791_1790	p.M598fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	54	0	0	69	10	12.66	-	-	-	C	29006117	-	C	29006116	7	5	173	1	0	1	1	0	0	0	0	0	8327	1335	47	0	3789	0	KIF13B	8	29006116	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09		29006116	117357906	13	10397										
TMEM71	0	genome.wustl.edu	37	chr8	133764157	133764157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tggtgaggagtctgggacttCggcgacaggtatagtgggag	19	5	1	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	8	133764157	133764157	C	T	SNP	TMEM71	ENST00000356838	human	ensembl	69_37n	-1	known	missense	c.188	p.R63Q	1.000	NULL	NULL	-	no_errors	TMEM71	HGNC	ENSG00000165071	248	0	0	269	111	28.98	-	-	-	T	133764157	C	T	133764157	3	4	173	1	0	0	0	0	1	0	0	0	16295	884	31	1	727	1	TMEM71	8	133764157	Missense_Mutation	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	104758041	133764157	12599865	14	10398										
SPATC1	0	genome.wustl.edu	37	chr8	145095485	145095486	+	Frame_Shift_Ins	INS	-	-	C													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tagtcccactctccactgagINScccccccagtcgacccagga							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	8	145095485	145095486	-	C	INS	SPATC1	ENST00000377470	human	ensembl	69_37n	1	known	frame_shift_ins	c.783_784	p.Q263fs	0.013:0.003	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583	17	0	0	19	3	13.64	-	-	-	C	145095486	-	C	145095485	7	5	173	1	0	1	1	0	0	0	0	0	15108	962	34	0	793	0	SPATC1	8	145095485	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09	11331328	145095485	1268537	15	10399										
DOCK8	0	genome.wustl.edu	37	chr9	377063	377063	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cgcgtgctggatcagaaaatCagcgagatggcgctggagca	15	9	2	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	9	377063	377063	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	silent	c.2292	p.I764	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	29	0	0	51	11	17.74	-	-	-	T	377063	C	T	377063	2	4	173	1	0	0	0	0	0	0	0	1	4728	816	29	2		2	DOCK8	9	377063	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09		377063	140836368	16	10400										
UBAP1	0	genome.wustl.edu	37	chr9	34251528	34251529	+	In_Frame_Ins	INS	-	-	CTA													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ggctcgggcaggagccagctINSgagaccaggccctgcctagg							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	9	34251528	34251529	-	CTA	INS	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	in_frame_ins	c.1699_1700	p.*567in_frame_insSR	1.000:1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	12	0	0	15	10	40	-	-	-	CTA	34251529	-	CTA	34251528	7	5	173	1	0	1	1	0	0	0	0	0	16933	1593	55	0	1766	0	UBAP1	9	34251528	In_Frame_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09	33874465	34251528	106961903	17	10401										
DHX32	0	genome.wustl.edu	37	chr10	127529507	127529509	+	In_Frame_Del	DEL	CCA	CCA	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tcgggatgtaaaaatgtcttCcaacaagtcaaggcagcctc							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	10	127529507	127529509	CCA	-	DEL	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	in_frame_del	c.1602_1600	p.W534in_frame_del	0.612:0.621:0.423	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	114	0	0	125	30	18.99	-	-	-	-	127529509	CCA	-	127529507	7	5	173	1	0	1	0	1	0	0	0	0	4541	856	30	0	645	0	DHX32	10	127529507	In_Frame_Del	DEL	CCA	TCGA-A8-A07J-01A-11W-A019-09		127529507	8005240	18	10402										
SSRP1	0	genome.wustl.edu	37	chr11	57099870	57099870	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cactcactcgttcatgttcaGagtcaacgaaatgtcctcgt	7	12	4	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	57099870	57099870	G	T	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	missense	c.859	p.L287M	1.000	pfam_SSRP1_dom	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136	55	0	0	236	34	12.59	-	-	-	T	57099870	G	T	57099870	3	4	173	1	0	0	0	0	1	0	0	0	15285	933	33	2	1314	2	SSRP1	11	57099870	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		57099870	77906646	19	10403										
INTS5	0	genome.wustl.edu	37	chr11	62414499	62414499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gagcaagaaaaggctacgtcCcctgtcgaaggagagtggac	14	9	0	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	62414499	62414499	C	T	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.3053	p.G1018E	1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	85	0	0	18	9	33.33	-	-	-	T	62414499	C	T	62414499	3	4	173	1	0	0	0	0	1	0	0	0	7835	623	22	4	10	4	INTS5	11	62414499	Missense_Mutation	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	5314629	62414499	72592017	20	10404										
TMEM151A	0	genome.wustl.edu	37	chr11	66061808	66061809	+	Frame_Shift_Ins	INS	-	-	TG													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gcagcagcggcccctgaaacINSagtccctgggaagctccctg							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	66061808	66061809	-	TG	INS	TMEM151A	ENST00000327259	human	ensembl	69_37n	1	known	frame_shift_ins	c.91_92	p.Q31fs	1.000:1.000	NULL	NULL	-	no_errors	TMEM151A	HGNC	ENSG00000179292	15	0	0	13	5	27.78	-	-	-	TG	66061809	-	TG	66061808	7	5	173	1	0	1	1	0	0	0	0	0	16165	479	17	0	97	0	TMEM151A	11	66061808	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09	3647309	66061808	68944708	21	10405										
ADAMTS15	0	genome.wustl.edu	37	chr11	130343335	130343335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ccctctgtcttgcacaacagCgtcctcagcctctccaacca	5	19	4	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	130343335	130343335	C	T	SNP	ADAMTS15	ENST00000299164	human	ensembl	69_37n	1	known	silent	c.2472	p.S824	0.920	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	28	0	0	16	7	30.43	-	-	-	T	130343335	C	T	130343335	2	4	173	1	0	0	0	0	0	0	0	1	260	767	27	1		1	ADAMTS15	11	130343335	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	64281527	130343335	4663181	22	10406										
GNB3	0	genome.wustl.edu	37	chr12	6952645	6952645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	catctacaacctcaaatcccGtgagggcaatgtcaaggtca	8	12	4	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	12	6952645	6952645	G	A	SNP	GNB3	ENST00000229264	human	ensembl	69_37n	1	known	missense	c.386	p.R129H	0.996	superfamily_WD40_repeat_dom,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664	115	0	0	78	11	12.36	-	-	-	A	6952645	G	A	6952645	3	1	173	1	0	0	0	0	1	0	0	0	6571	1145	40	1	404	1	GNB3	12	6952645	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		6952645	126899250	23	10407										
FRY	0	genome.wustl.edu	37	chr13	32783135	32783135	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	agcagcccagaggacgaagtCaaggaccgggaaggtgacgt	16	9	1	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	13	32783135	32783135	C	G	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	silent	c.4164	p.V1388	0.712	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	103	0	0	65	16	19.75	-	-	-	G	32783135	C	G	32783135	2	3	173	1	0	0	0	0	0	0	0	1	6112	813	29	2		2	FRY	13	32783135	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09		32783135	82386743	24	10408										
PCDH9	0	genome.wustl.edu	37	chr13	67802470	67802470	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tcctatgggcacattttcagGcaattcctctctaatagtgt	7	10	2	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	13	67802470	67802470	G	C	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.103	p.P35A	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	118	0	0	81	18	18.18	-	-	-	C	67802470	G	C	67802470	3	2	173	1	0	0	0	0	1	0	0	0	11591	1203	42	4	3626	4	PCDH9	13	67802470	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	35019335	67802470	47367408	25	10409										
RAB15	0	genome.wustl.edu	37	chr14	65417692	65417695	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	catccagggctgtggaaggcAaagcttcctggaagcatttg							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	14	65417692	65417695	AAAG	-	DEL	RAB15	ENST00000267512	human	ensembl	69_37n	-1	known	frame_shift_del	c.424_421	p.L141fs	0.000:0.001:0.000:0.000	smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB15	HGNC	ENSG00000139998	21	0	0	28	13	30.95	-	-	-	-	65417695	AAAG	-	65417692	7	5	173	1	0	1	0	1	0	0	0	0	12984	130	5	0	218	0	RAB15	14	65417692	Frame_Shift_Del	DEL	AAAG	TCGA-A8-A07J-01A-11W-A019-09		65417692	41931848	26	10410										
MEGF11	0	genome.wustl.edu	37	chr15	66273125	66273126	+	Frame_Shift_Ins	INS	-	-	G													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gcccacttaccgtccagcctINSggggggcaggcacactcgcc							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	15	66273125	66273126	-	G	INS	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	frame_shift_ins	c.753_752	p.G252fs	0.995:1.000	pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	12	0	0	4	3	42.86	-	-	-	G	66273126	-	G	66273125	7	5	173	1	0	1	1	0	0	0	0	0	9532	1567	55	0	2449	0	MEGF11	15	66273125	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09		66273125	36258267	27	10411										
ITGA11	0	genome.wustl.edu	37	chr15	68654007	68654007	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	atccctgtggtgtagtaggaGctcccacactcatgagacca	10	12	1	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	15	68654007	68654007	G	T	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.393	p.S131R	0.999	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	21	0	0	13	6	31.58	-	-	-	T	68654007	G	T	68654007	3	4	173	1	0	0	0	0	1	0	0	0	7928	962	34	4	3277	4	ITGA11	15	68654007	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	2380882	68654007	33877385	28	10412										
HEATR3	0	genome.wustl.edu	37	chr16	50102690	50102690	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tgttttaaacttcttgtgtaGaaatctcagtgcttgtggag	10	5	2	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	16	50102690	50102690	G	T	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	splice_site	c.312-1	e3-1	1.000	-	-	-	no_errors	HEATR3	HGNC	ENSG00000155393	216	0	0	128	15	10.49	-	-	-	T	50102690	G	T	50102690	5	4	173	1	0	0	0	0	0	0	1	0	7080	956	33	2	321	2	HEATR3	16	50102690	Splice_Site	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		50102690	40252063	29	10413										
CCR10	0	genome.wustl.edu	37	chr17	40832609	40832609	+	Frame_Shift_Del	DEL	A	A	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gccgagtatgcgtcctcttcAtccccagagtaatggcccca							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	17	40832609	40832609	A	-	DEL	CCR10	ENST00000332438	human	ensembl	69_37n	-1	known	frame_shift_del	c.51	p.D17fs	0.000	prints_Chemokine_CCR10	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR10,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCR10	HGNC	ENSG00000184451	17	0	0	3	56	93.33	-	-	-	-	40832609	A	-	40832609	7	5	173	1	0	1	0	1	0	0	0	0	2969	214	8	0	1041	0	CCR10	17	40832609	Frame_Shift_Del	DEL	A	TCGA-A8-A07J-01A-11W-A019-09		40832609	40362601	30	10414										
MUC16	0	genome.wustl.edu	37	chr19	8993436	8993436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ctcagtgatgctgtgggtcaGctggctcagctccaaataca	11	11	3	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	19	8993436	8993436	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.41653	p.L13885M	0.000	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	380	1	0.26	419	154	26.88	-	-	-	T	8993436	G	T	8993436	3	4	173	1	0	0	0	0	1	0	0	0	10045	962	34	4	1946	4	MUC16	19	8993436	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		8993436	50135547	31	10415										
MED26	0	genome.wustl.edu	37	chr19	16687548	16687548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gcctgcccgggacaggagggGctcggctggggacagccctg	19	13	0	0			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	19	16687548	16687548	G	T	SNP	MED26	ENST00000263390	human	ensembl	69_37n	-1	known	missense	c.1093	p.P365T	0.097	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085	10	0	0	7	16	69.57	-	-	-	T	16687548	G	T	16687548	3	4	173	1	0	0	0	0	1	0	0	0	9515	1203	42	4	713	4	MED26	19	16687548	Missense_Mutation	SNP	G	TCGA-A8-A07J-01A-11W-A019-09	7694112	16687548	42441435	32	10416										
SPTBN4	0	genome.wustl.edu	37	chr19	41021284	41021284	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	ctggacgtgaaccacacagtCcaggagctggtggaaggagg	16	9	0	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	19	41021284	41021284	C	T	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	silent	c.2832	p.V944	0.815	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	19	0	0	10	7	41.18	-	-	-	T	41021284	C	T	41021284	2	4	173	1	0	0	0	0	0	0	0	1	15212	842	30	2		2	SPTBN4	19	41021284	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	24333736	41021284	18107699	33	10417										
SON	0	genome.wustl.edu	37	chr21	34925625	34925627	+	In_Frame_Del	DEL	CGG	CGG	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tatggctgtcctggagtcttCggctgtgaccgtcctggagt							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	21	34925625	34925627	CGG	-	DEL	SON	ENST00000356577	human	ensembl	69_37n	1	known	in_frame_del	c.4088_4090	p.A1364in_frame_del	0.001:0.000:0.002	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	33	0	0	28	28	50	-	-	-	-	34925627	CGG	-	34925625	7	5	173	1	0	1	0	1	0	0	0	0	15015	893	31	0	4098	0	SON	21	34925625	In_Frame_Del	DEL	CGG	TCGA-A8-A07J-01A-11W-A019-09		34925625	13204270	34	10418										
UMODL1	0	genome.wustl.edu	37	chr21	43505492	43505492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cagcaagtggaccccaggctCctgaaccacatgcgccttct	9	16	1	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	21	43505492	43505492	C	T	SNP	UMODL1	ENST00000400421	human	ensembl	69_37n	1	known	missense	c.80	p.S27F	0.752	NULL	pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UMODL1	HGNC	ENSG00000177398	126	0	0	64	16	20	-	-	-	T	43505492	C	T	43505492	3	4	173	1	0	0	0	0	1	0	0	0	17077	842	30	2	587	2	UMODL1	21	43505492	Missense_Mutation	SNP	C	TCGA-A8-A07J-01A-11W-A019-09	8579867	43505492	4624403	35	10419										
RIMBP3	0	genome.wustl.edu	37	chr22	20457060	20457060	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	tggagctggcaccctctcttCacccccagagcttgtccttg	9	16	2	1			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	22	20457060	20457060	C	G	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	silent	c.4242	p.V1414	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	8	0	0	2	7	77.78	-	-	-	G	20457060	C	G	20457060	2	3	173	1	0	0	0	0	0	0	0	1	13448	813	29	2		2	RIMBP3	22	20457060	Silent	SNP	C	TCGA-A8-A07J-01A-11W-A019-09		20457060	30847506	36	10420										
HCCS	0	genome.wustl.edu	37	chrX	11136711	11136711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	aacgagcaggcttggaaggaGattttgaagtgggaagccct	15	6	0	2			TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	X	11136711	11136711	G	A	SNP	HCCS	ENST00000321143	human	ensembl	69_37n	1	known	silent	c.492	p.E164	1.000	pfam_Cyt_C/C1_haem_lyase	pfam_Cyt_C/C1_haem_lyase	-	no_errors	HCCS	HGNC	ENSG00000004961	313	0	0	201	36	15.19	-	-	-	A	11136711	G	A	11136711	2	1	173	1	0	0	0	0	0	0	0	1	7041	933	33	2		2	HCCS	23	11136711	Silent	SNP	G	TCGA-A8-A07J-01A-11W-A019-09		11136711	144133849	37	10421										
HUWE1	0	genome.wustl.edu	37	chrX	53579640	53579640	+	Frame_Shift_Del	DEL	C	C	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gattcccctgacccatcactCctgccttgcacttccgccac							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	X	53579640	53579640	C	-	DEL	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	frame_shift_del	c.8709	p.S2904fs	0.018	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	184	0	0	223	159	41.41	-	-	-	-	53579640	C	-	53579640	7	5	173	1	0	1	0	1	0	0	0	0	7515	854	30	0	4507	0	HUWE1	23	53579640	Frame_Shift_Del	DEL	C	TCGA-A8-A07J-01A-11W-A019-09	42442929	53579640	101690920	38	10422	88	3								
HUWE1	0	genome.wustl.edu	37	chrX	53579644	53579645	+	Frame_Shift_Del	DEL	CC	CC	-													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	cccctgacccatcactcctgCcttgcacttccgccacagct							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	X	53579644	53579645	CC	-	DEL	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	frame_shift_del	c.8705_8704	p.G2902fs	0.708:0.481	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	175	0	0	214	159	42.63	-	-	-	-	53579645	CC	-	53579644	7	5	173	1	0	1	0	1	0	0	0	0	7515	739	26	0	4511	0	HUWE1	23	53579644	Frame_Shift_Del	DEL	CC	TCGA-A8-A07J-01A-11W-A019-09	4	53579644	101690916	39	10423	88	3								
HUWE1	0	genome.wustl.edu	37	chrX	53579648	53579649	+	Frame_Shift_Ins	INS	-	-	C													0.157894736842105	6	0.0613922451710412	2.91256830601093	5.82513661202186	2.33005464480874	0.608391608391609	1	0	gacccatcactcctgccttgINScacttccgccacagctggtg							TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	X	53579648	53579649	-	C	INS	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8701_8700	p.Q2900fs	0.854:0.001	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	161	0	0	216	162	42.86	-	-	-	C	53579649	-	C	53579648	7	5	173	1	0	1	1	0	0	0	0	0	7515	1328	46	0	4515	0	HUWE1	23	53579648	Frame_Shift_Ins	INS	-	TCGA-A8-A07J-01A-11W-A019-09	4	53579648	101690912	40	10424	88	3								
CSMD2	0	genome.wustl.edu	37	chr1	34190272	34190272	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gtccatttactgggattcctGgatccagacagtggtctgac	11	10	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	34190272	34190272	G	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.2729	p.P910Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	103	0	0	79	42	34.71	-	-	-	T	34190272	G	T	34190272	3	4	174	1	0	0	0	0	1	0	0	0	3977	1348	47	4	8062	4	CSMD2	1	34190272	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09		34190272	215060349	1	10425										
ZSWIM5	0	genome.wustl.edu	37	chr1	45516799	45516799	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tggtgatgttgggcagctcaTgtccatagtttccatcctcc	10	11	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	45516799	45516799	T	A	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	missense	c.1379	p.H460L	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	144	0	0	93	85	47.75	-	-	-	A	45516799	T	A	45516799	3	1	174	1	0	0	0	0	1	0	0	0	18335	1464	51	5	2218	5	ZSWIM5	1	45516799	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	11326527	45516799	203733822	2	10426										
DNAJB4	0	genome.wustl.edu	37	chr1	78478898	78478898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ggtagagattctgaagaaatGgaaatagatggtgatccttt	12	3	1	5			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	78478898	78478898	G	A	SNP	DNAJB4	ENST00000370763	human	ensembl	69_37n	1	known	missense	c.375	p.M125I	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB4	HGNC	ENSG00000162616	337	0	0	246	145	36.99	-	-	-	A	78478898	G	A	78478898	3	1	174	1	0	0	0	0	1	0	0	0	4657	1348	47	4	381	4	DNAJB4	1	78478898	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	32962099	78478898	170771723	3	10427										
MCOLN3	0	genome.wustl.edu	37	chr1	85506801	85506801	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aggaaaaggtgtttgaatgcTatagtattctcttccttgaa	9	5	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	85506801	85506801	T	C	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.288	p.I96M	0.933	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	224	0	0	46	105	69.54	-	-	-	C	85506801	T	C	85506801	3	2	174	1	0	0	0	0	1	0	0	0	9468	1512	53	5	1417	5	MCOLN3	1	85506801	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	7027903	85506801	163743820	4	10428										
SETDB1	0	genome.wustl.edu	37	chr1	150921875	150921875	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccagcttgcccagtcacggaAgcaggtagccaaaaagagca	11	12	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	150921875	150921875	A	C	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.1454	p.K485T	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	165	0	0	292	70	19.34	-	-	-	C	150921875	A	C	150921875	3	2	174	1	0	0	0	0	1	0	0	0	14226	72	3	5	1496	5	SETDB1	1	150921875	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	65415074	150921875	98328746	5	10429										
HRNR	0	genome.wustl.edu	37	chr1	152188961	152188961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aaccggacccatgtcggccgCggctaggggactggccagat	15	13	0	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	152188961	152188961	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5144	p.R1715H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	32	0	0	69	15	17.86	-	-	-	T	152188961	C	T	152188961	3	4	174	1	0	0	0	0	1	0	0	0	7410	768	27	1	3412	1	HRNR	1	152188961	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	1267086	152188961	97061660	6	10430										
CASQ1	0	genome.wustl.edu	37	chr1	160165315	160165315	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	atccccttcttcgccaccttCgacagcaaggttctcctccc	5	19	2	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	160165315	160165315	C	T	SNP	CASQ1	ENST00000368078	human	ensembl	69_37n	1	known	silent	c.642	p.F214	0.997	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318	144	0	0	365	60	14.12	-	-	-	T	160165315	C	T	160165315	2	4	174	1	0	0	0	0	0	0	0	1	2705	883	31	1		1	CASQ1	1	160165315	Silent	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	7976354	160165315	89085306	7	10431										
GPR161	0	genome.wustl.edu	37	chr1	168073818	168073818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tacaccaaagatccattcccTgcggatggagctcgtcacca	8	14	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	168073818	168073818	T	C	SNP	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	missense	c.331	p.R111G	0.956	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	112	0	0	153	33	17.65	-	-	-	C	168073818	T	C	168073818	3	2	174	1	0	0	0	0	1	0	0	0	6715	1579	55	5	1338	5	GPR161	1	168073818	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	7908503	168073818	81176803	8	10432										
F5	0	genome.wustl.edu	37	chr1	169484814	169484814	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgtgttataattgccgttatCttcttgatcttgagtagatc	8	6	3	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	169484814	169484814	C	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.6411	p.K2137N	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	251	0	0	430	90	17.27	-	-	-	A	169484814	C	A	169484814	3	1	174	1	0	0	0	0	1	0	0	0	5385	912	32	2	286	2	F5	1	169484814	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	1410996	169484814	79765807	9	10433										
SELP	0	genome.wustl.edu	37	chr1	169578747	169578747	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccactgttacagtaccttgaCagactggggctggtgctgtc	12	11	0	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	169578747	169578747	C	G	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.1328	p.C443S	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	140	0	0	331	70	17.46	-	-	-	G	169578747	C	G	169578747	3	3	174	1	0	0	0	0	1	0	0	0	14107	478	17	4	1200	4	SELP	1	169578747	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	93933	169578747	79671874	10	10434										
ASTN1	0	genome.wustl.edu	37	chr1	176863946	176863946	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gtctctttcccgctcctcagActcatctgatggggagttgc	10	13	4	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	176863946	176863946	A	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2716	p.S906T	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	185	0	0	226	71	23.91	-	-	-	T	176863946	A	T	176863946	3	4	174	1	0	0	0	0	1	0	0	0	1068	275	10	5	1224	5	ASTN1	1	176863946	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	7285199	176863946	72386675	11	10435										
ASTN1	0	genome.wustl.edu	37	chr1	176918359	176918359	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttatacaaggtggggtcgtcCgggaagggcgccatctgctg	16	9	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	176918359	176918359	C	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.2040	p.P680	0.478	smart_EGF-like	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	79	0	0	112	42	27.1	-	-	-	A	176918359	C	A	176918359	2	1	174	1	0	0	0	0	0	0	0	1	1068	639	23	3		3	ASTN1	1	176918359	Silent	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	54413	176918359	72332262	12	10436										
DENND1B	0	genome.wustl.edu	37	chr1	197564409	197564409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tctaagaaaggccctagctaCtccatcacccgtagctgtag	8	13	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	197564409	197564409	C	T	SNP	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	missense	c.976	p.V326I	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	557	0	0	763	116	13.18	-	-	-	T	197564409	C	T	197564409	3	4	174	1	0	0	0	0	1	0	0	0	4463	565	20	4	1432	4	DENND1B	1	197564409	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	20646050	197564409	51686212	13	10437										
CR2	0	genome.wustl.edu	37	chr1	207640226	207640226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgtcaagcaaataatatgtgGgggccgacacgactaccaac	10	10	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	207640226	207640226	G	C	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	missense	c.414	p.W138C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	97	0	0	250	64	20.38	-	-	-	C	207640226	G	C	207640226	3	2	174	1	0	0	0	0	1	0	0	0	3872	1241	43	4	420	4	CR2	1	207640226	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	10075817	207640226	41610395	14	10438										
MARK1	0	genome.wustl.edu	37	chr1	220825377	220825377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cttctgcaggctcttctgtgGcctctgctgtcccctcagca	9	16	5	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	1	220825377	220825377	G	A	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.1621	p.A541T	0.052	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	123	0	0	85	26	23.42	-	-	-	A	220825377	G	A	220825377	3	1	174	1	0	0	0	0	1	0	0	0	9383	1203	42	4	1679	4	MARK1	1	220825377	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	13185151	220825377	28425244	15	10439										
MXD1	0	genome.wustl.edu	37	chr2	70165321	70165321	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gcgactctgacgagcggggcAgcatgcagagcctcggcagt	16	12	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	70165321	70165321	A	C	SNP	MXD1	ENST00000264444	human	ensembl	69_37n	1	known	missense	c.571	p.S191R	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD1	HGNC	ENSG00000059728	71	0	0	39	30	43.48	-	-	-	C	70165321	A	C	70165321	3	2	174	1	0	0	0	0	1	0	0	0	10071	188	7	5	593	5	MXD1	2	70165321	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09		70165321	173034052	16	10440										
TGFBRAP1	0	genome.wustl.edu	37	chr2	105883873	105883873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccaggactggatgagctgggGtttgtgtgtctgctggcggc	18	8	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	105883873	105883873	G	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	69_37n	-1	known	missense	c.2550	p.N850K	0.217	NULL	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	105	0	0	55	31	36.05	-	-	-	T	105883873	G	T	105883873	3	4	174	1	0	0	0	0	1	0	0	0	15919	1252	44	4	36	4	TGFBRAP1	2	105883873	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	35718552	105883873	137315500	17	10441										
FSIP2	0	genome.wustl.edu	37	chr2	186670216	186670216	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	caatatctgcattcaggattCaaccacttttttcaggagac	6	10	4	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	186670216	186670216	C	T	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	nonsense	c.16450	p.Q5484*	1.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	291	0	0	213	115	34.95	-	-	-	T	186670216	C	T	186670216	4	4	174	1	0	0	0	0	0	1	0	0	6124	827	29	2	16516	2	FSIP2	2	186670216	Nonsense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	80786343	186670216	56529157	18	10442										
STAT4	0	genome.wustl.edu	37	chr2	192012876	192012876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttgtcatcatagaattgatcCacctgctccaaaaacttgat	5	10	2	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	192012876	192012876	C	T	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	silent	c.54	p.V18	0.938	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	352	0	0	177	94	34.69	-	-	-	T	192012876	C	T	192012876	2	4	174	1	0	0	0	0	0	0	0	1	15358	581	21	4		4	STAT4	2	192012876	Silent	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	5342660	192012876	51186497	19	10443										
CCDC150	0	genome.wustl.edu	37	chr2	197521456	197521456	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgtgcaggaaaaacagatatTttatggaagaactgtgagtt	11	3	0	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	197521456	197521456	T	G	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.276	p.I92M	0.938	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	112	0	0	68	54	44.26	-	-	-	G	197521456	T	G	197521456	3	3	174	1	0	0	0	0	1	0	0	0	2810	1829	64	5	286	5	CCDC150	2	197521456	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	5508580	197521456	45677917	20	10444										
FN1	0	genome.wustl.edu	37	chr2	216271007	216271007	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttgctctccctcccatggctCactgcaaagactttgaagta	7	13	2	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	2	216271007	216271007	C	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	silent	c.2940	p.V980	0.826	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	125	0	0	75	40	34.78	-	-	-	A	216271007	C	A	216271007	2	1	174	1	0	0	0	0	0	0	0	1	6008	813	29	2		2	FN1	2	216271007	Silent	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	18749551	216271007	26928366	21	10445										
GOLGA4	0	genome.wustl.edu	37	chr3	37367243	37367243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	agaggagcaaaatacactaaAtatttcttttcaacaggcta	6	7	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	3	37367243	37367243	A	G	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.3866	p.N1289S	0.009	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	229	0	0	52	186	77.82	-	-	-	G	37367243	A	G	37367243	3	3	174	1	0	0	0	0	1	0	0	0	6607	101	4	5	3990	5	GOLGA4	3	37367243	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09		37367243	160655187	22	10446										
SLITRK3	0	genome.wustl.edu	37	chr3	164906133	164906133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ggtgattcaccgtcactatgGtgttaagctgggagctggac	14	8	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	3	164906133	164906133	G	A	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.2486	p.T829I	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	347	0	0	148	196	56.98	-	-	-	A	164906133	G	A	164906133	3	1	174	1	0	0	0	0	1	0	0	0	14833	1261	44	4	451	4	SLITRK3	3	164906133	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	127538890	164906133	33116297	23	10447										
CD38	0	genome.wustl.edu	37	chr4	15818253	15818253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gttgggaactcagaccgtacCttgcaacaaggtaattgggg	13	8	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	4	15818253	15818253	C	A	SNP	CD38	ENST00000226279	human	ensembl	69_37n	1	known	missense	c.353	p.P118H	0.887	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468	287	0	0	363	122	25.15	-	-	-	A	15818253	C	A	15818253	3	1	174	1	0	0	0	0	1	0	0	0	3038	681	24	4	359	4	CD38	4	15818253	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09		15818253	175336023	24	10448										
INTS12	0	genome.wustl.edu	37	chr4	106613283	106613283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aattgattgccagatgccacCatcatttgcctaagaaaaca	6	10	1	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	4	106613283	106613283	C	T	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	missense	c.507	p.M169I	0.002	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	115	0	0	22	51	69.86	-	-	-	T	106613283	C	T	106613283	3	4	174	1	0	0	0	0	1	0	0	0	7831	594	21	4	893	4	INTS12	4	106613283	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	90795030	106613283	84540993	25	10449										
KIAA1109	0	genome.wustl.edu	37	chr4	123151230	123151230	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gacttcagcctgcagtgctaCggagggcctattggcttgaa	13	10	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	4	123151230	123151230	C	A	SNP	KIAA1109	ENST00000424425	human	ensembl	69_37n	1	novel	missense	c.2681	p.T894K	0.983	NULL	pfam_MMADHC	-	no_start_codon:pseudogene	KIAA1109	HGNC	ENSG00000138688	149	0	0	117	61	34.27	-	-	-	A	123151230	C	A	123151230	3	1	174	1	0	0	0	0	1	0	0	0	8260	527	19	3	3281	3	KIAA1109	4	123151230	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	16537947	123151230	68003046	26	10450										
NR3C2	0	genome.wustl.edu	37	chr4	149356793	149356793	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttcctcctagacatgagctgCtaaaagctccatctggttct	7	12	2	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	4	149356793	149356793	C	G	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.1220	p.S407T	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	192	0	0	95	72	43.11	-	-	-	G	149356793	C	G	149356793	3	3	174	1	0	0	0	0	1	0	0	0	10704	797	28	4	1766	4	NR3C2	4	149356793	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	26205563	149356793	41797483	27	10451										
VCAN	0	genome.wustl.edu	37	chr5	82832924	82832924	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cagatccagtgcatgatctaAtggctgaaattttacctgaa	8	8	1	4			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	5	82832924	82832924	A	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.4102	p.M1368L	0.003	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	198	0	0	135	98	42.06	-	-	-	C	82832924	A	C	82832924	3	2	174	1	0	0	0	0	1	0	0	0	17235	101	4	5	4128	5	VCAN	5	82832924	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09		82832924	98082336	28	10452										
STK10	0	genome.wustl.edu	37	chr5	171488230	171488230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ggtggtgagcctcttcatggCcagctccaggtcctccttct	11	14	3	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	5	171488230	171488230	C	G	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	missense	c.2125	p.A709P	1.000	pfam_PKK	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	109	0	0	55	40	41.67	-	-	-	G	171488230	C	G	171488230	3	3	174	1	0	0	0	0	1	0	0	0	15377	739	26	4	805	4	STK10	5	171488230	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	88655306	171488230	9427030	29	10453										
HIST1H2AI	0	genome.wustl.edu	37	chr6	27776369	27776369	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccgagagccaccacaaggcgAagggcaagtagaagcctgga	14	11	0	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	6	27776369	27776369	A	T	SNP	HIST1H2AI	ENST00000358739	human	ensembl	69_37n	1	known	nonsense	c.382	p.K128*	1.000	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AI	HGNC	ENSG00000196747	69	0	0	50	35	40.7	-	-	-	T	27776369	A	T	27776369	4	4	174	1	0	0	0	0	0	1	0	0	7186	247	9	5	384	5	HIST1H2AI	6	27776369	Nonsense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09		27776369	143338698	30	10454										
HLA-G	0	genome.wustl.edu	37	chr6	29797223	29797223	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aagacacacgtgacccaccaCcctgtctttgactatgaggc	8	14	1	4			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	6	29797223	29797223	C	A	SNP	HLA-G	ENST00000376828	human	ensembl	69_37n	1	known	missense	c.663	p.H221Q	0.038	pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-G	HGNC	ENSG00000204632	181	0	0	130	69	34.16	-	-	-	A	29797223	C	A	29797223	3	1	174	1	0	0	0	0	1	0	0	0	7263	506	18	4	662	4	HLA-G	6	29797223	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	2020854	29797223	141317844	31	10455										
TAAR5	0	genome.wustl.edu	37	chr6	132910035	132910035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ctatggtgaagggcagccagCacaagaggtatatgcccaca	12	10	0	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	6	132910035	132910035	C	T	SNP	TAAR5	ENST00000258034	human	ensembl	69_37n	-1	known	missense	c.791	p.C264Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR5	HGNC	ENSG00000135569	128	0	0	39	116	74.84	-	-	-	T	132910035	C	T	132910035	3	4	174	1	0	0	0	0	1	0	0	0	15583	710	25	4	226	4	TAAR5	6	132910035	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	103112812	132910035	38205032	32	10456										
ULBP1	0	genome.wustl.edu	37	chr6	150290226	150290226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tttgcaatggggcagagcccCtcaccctgcaggccaggatg	13	13	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	6	150290226	150290226	C	T	SNP	ULBP1	ENST00000229708	human	ensembl	69_37n	1	known	missense	c.355	p.L119F	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981	70	0	0	22	60	73.17	-	-	-	T	150290226	C	T	150290226	3	4	174	1	0	0	0	0	1	0	0	0	17069	681	24	4	365	4	ULBP1	6	150290226	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	17380191	150290226	20824841	33	10457										
ARID1B	0	genome.wustl.edu	37	chr6	157527623	157527623	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gaagcccaagcaagccagtaAgttcgacaagctgccaataa	9	11	0	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	6	157527623	157527623	A	C	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.5468	p.K1823T	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	181	0	0	32	122	79.22	-	-	-	C	157527623	A	C	157527623	3	2	174	1	0	0	0	0	1	0	0	0	916	72	3	5	5426	5	ARID1B	6	157527623	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	7237397	157527623	13587444	34	10458										
HOXA3	0	genome.wustl.edu	37	chr7	27148052	27148053	+	Frame_Shift_Ins	INS	-	-	G													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttcagatagccaccggctccINSggggggcacggggctgcgac							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	7	27148052	27148053	-	G	INS	HOXA3	ENST00000317201	human	ensembl	69_37n	-1	known	frame_shift_ins	c.814_813	p.G271fs	1.000:0.001	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997	54	0	0	43	5	10.42	-	-	-	G	27148053	-	G	27148052	7	5	174	1	0	1	1	0	0	0	0	0	7344	661	23	0	521	0	HOXA3	7	27148052	Frame_Shift_Ins	INS	-	TCGA-A8-A07L-01A-11W-A019-09		27148052	131990611	35	10459										
RELN	0	genome.wustl.edu	37	chr7	103185571	103185571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aatttgtaagaaaagactacCttcgaaatcatctttgagaa	6	6	2	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	7	103185571	103185571	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.6523	p.G2175S	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	122	0	0	69	51	42.5	-	-	-	T	103185571	C	T	103185571	3	4	174	1	0	0	0	0	1	0	0	0	13303	695	24	4	3955	4	RELN	7	103185571	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	76037519	103185571	55953092	36	10460										
FAM180A	0	genome.wustl.edu	37	chr7	135433316	135433316	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	caacagcagaagcagcaacaTcttccaatgcatcttgtcct	6	13	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	7	135433316	135433316	T	A	SNP	FAM180A	ENST00000338588	human	ensembl	69_37n	-1	known	missense	c.13	p.M5L	0.440	NULL	NULL	-	no_errors	FAM180A	HGNC	ENSG00000189320	384	0	0	261	149	36.25	-	-	-	A	135433316	T	A	135433316	3	1	174	1	0	0	0	0	1	0	0	0	5547	1435	50	5	520	5	FAM180A	7	135433316	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	32247745	135433316	23705347	37	10461										
MGAM	0	genome.wustl.edu	37	chr7	141708438	141708438	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aactggtaccactcctgtttCtgctgaatgtccagtggtaa	9	10	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	7	141708438	141708438	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.260	p.S87F	0.054	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	162	0	0	101	72	41.62	-	-	-	T	141708438	C	T	141708438	3	4	174	1	0	0	0	0	1	0	0	0	9612	913	32	2	266	2	MGAM	7	141708438	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	6275122	141708438	17430225	38	10462										
EPHB6	0	genome.wustl.edu	37	chr7	142562162	142562162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	acgtcaaagagcggagctttGggcctctcacccaacgcggc	12	14	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	7	142562162	142562162	G	T	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	missense	c.604	p.G202W	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	57	0	0	26	18	40	-	-	-	T	142562162	G	T	142562162	3	4	174	1	0	0	0	0	1	0	0	0	5215	1348	47	4	614	4	EPHB6	7	142562162	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	853724	142562162	16576501	39	10463										
FAM167A	0	genome.wustl.edu	37	chr8	11301766	11301766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gccaggtatgctcctccagcCtggcctgccattccaggtag	11	15	0	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	11301766	11301766	C	A	SNP	FAM167A	ENST00000284486	human	ensembl	69_37n	-1	known	missense	c.155	p.R52M	0.973	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319	20	0	0	11	15	57.69	-	-	-	A	11301766	C	A	11301766	3	1	174	1	0	0	0	0	1	0	0	0	5523	681	24	4	497	4	FAM167A	8	11301766	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09		11301766	135062256	40	10464										
AP3M2	0	genome.wustl.edu	37	chr8	42012278	42012278	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aacattggaaaagtgtggtcAgccgttctgtttgtgattac	11	6	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	42012278	42012278	A	G	SNP	AP3M2	ENST00000174653	human	ensembl	69_37n	1	known	missense	c.73	p.S25G	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718	61	0	0	68	21	23.6	-	-	-	G	42012278	A	G	42012278	3	3	174	1	0	0	0	0	1	0	0	0	749	188	7	5	75	5	AP3M2	8	42012278	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	30710512	42012278	104351744	41	10465										
HGSNAT	0	genome.wustl.edu	37	chr8	43054635	43054635	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cccacaaggagcacctgactCagaacatcgtcgccactgcc	8	17	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	43054635	43054635	C	A	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1915	p.Q639K	0.999	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	80	0	0	51	27	34.62	-	-	-	A	43054635	C	A	43054635	3	1	174	1	0	0	0	0	1	0	0	0	7139	827	29	2	1901	2	HGSNAT	8	43054635	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	1042357	43054635	103309387	42	10466										
PSKH2	0	genome.wustl.edu	37	chr8	87076599	87076599	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gtaaaggatccctgagcaatGagtcgatcaaagagctcccc	10	11	1	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	87076599	87076599	G	C	SNP	PSKH2	ENST00000276616	human	ensembl	69_37n	-1	known	silent	c.447	p.L149	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613	140	0	0	192	185	49.07	-	-	-	C	87076599	G	C	87076599	2	2	174	1	0	0	0	0	0	0	0	1	12745	1277	45	2		2	PSKH2	8	87076599	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	44021964	87076599	59287423	43	10467										
RNF19A	0	genome.wustl.edu	37	chr8	101271468	101271468	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	acttgcacctccatactgttGccttctctgaaatataagag	6	11	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	101271468	101271468	G	A	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	silent	c.1833	p.G611	0.995	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	271	0	0	705	92	11.53	-	-	-	A	101271468	G	A	101271468	2	1	174	1	0	0	0	0	0	0	0	1	13556	1306	46	4		4	RNF19A	8	101271468	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	14194869	101271468	45092554	44	10468										
ZNF572	0	genome.wustl.edu	37	chr8	125989263	125989263	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gaatgttctgtctgcggaaaAggcttcagtcacagctatgt	11	8	4	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	8	125989263	125989263	A	T	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	missense	c.753	p.K251N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	219	0	0	528	88	14.29	-	-	-	T	125989263	A	T	125989263	3	4	174	1	0	0	0	0	1	0	0	0	18100	69	3	5	759	5	ZNF572	8	125989263	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	24717795	125989263	20374759	45	10469										
PGM5	0	genome.wustl.edu	37	chr9	71007317	71007317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cattgctgccaacctctcttGcattccatatttccgtcaga	5	14	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	9	71007317	71007317	G	A	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.971	p.C324Y	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	65	0	0	44	42	48.84	-	-	-	A	71007317	G	A	71007317	3	1	174	1	0	0	0	0	1	0	0	0	11875	1319	46	4	993	4	PGM5	9	71007317	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09		71007317	70206114	46	10470										
KIAA1958	0	genome.wustl.edu	37	chr9	115337155	115337155	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gccatcagcacggagctagaCccacacggtatgtctgcatc	10	14	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	9	115337155	115337155	C	A	SNP	KIAA1958	ENST00000536272	human	ensembl	69_37n	1	known	missense	c.795	p.D265E	0.999	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	373	0	0	441	354	44.53	-	-	-	A	115337155	C	A	115337155	3	1	174	1	0	0	0	0	1	0	0	0	8316	506	18	4	797	4	KIAA1958	9	115337155	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	44329838	115337155	25876276	47	10471										
DFNB31	0	genome.wustl.edu	37	chr9	117188598	117188598	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccgacgtccttcactgtcagGatgaggtgccgagatgactt	12	11	2	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	9	117188598	117188598	G	C	SNP	DFNB31	ENST00000362057	human	ensembl	69_37n	-1	known	missense	c.1059	p.I353M	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	88	0	0	78	83	51.55	-	-	-	C	117188598	G	C	117188598	3	2	174	1	0	0	0	0	1	0	0	0	4491	1164	41	2	1700	2	DFNB31	9	117188598	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	1851443	117188598	24024833	48	10472										
C5	0	genome.wustl.edu	37	chr9	123759853	123759853	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gtaatgtttttactaagattTcttttccaaaccaagtctcc	4	9	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	9	123759853	123759853	T	C	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.2762	p.E921G	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	108	0	0	144	19	11.66	-	-	-	C	123759853	T	C	123759853	3	2	174	1	0	0	0	0	1	0	0	0	2301	1783	62	5	2352	5	C5	9	123759853	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	6571255	123759853	17453578	49	10473										
BMS1	0	genome.wustl.edu	37	chr10	43288536	43288536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ctctttctggagttgggggtGtgctgtatgacaaagacgct	14	7	2	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	43288536	43288536	G	T	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	missense	c.1033	p.V345L	0.990	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	357	0	0	195	141	41.96	-	-	-	T	43288536	G	T	43288536	3	4	174	1	0	0	0	0	1	0	0	0	1477	1377	48	4	1059	4	BMS1	10	43288536	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09		43288536	92246211	50	10474										
SYT15	0	genome.wustl.edu	37	chr10	46965117	46965117	+	Frame_Shift_Del	DEL	G	G	-													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tggaggtcgccaaactccgaGgggggctggggaggccaaga							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	46965117	46965117	G	-	DEL	SYT15	ENST00000374323	human	ensembl	69_37n	-1	known	frame_shift_del	c.987	p.S330fs	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT15	HGNC	ENSG00000204176	23	0	0	21	4	14.81	-	-	-	-	46965117	G	-	46965117	7	5	174	1	0	1	0	1	0	0	0	0	15563	987	35	0	503	0	SYT15	10	46965117	Frame_Shift_Del	DEL	G	TCGA-A8-A07L-01A-11W-A019-09	3676581	46965117	88569630	51	10475										
CAMK2G	0	genome.wustl.edu	37	chr10	75612979	75612979	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	acgaggtagtgaaacccttcTtcagaaatactgtcatggag	10	8	3	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	75612979	75612979	T	C	SNP	CAMK2G	ENST00000423381	human	ensembl	69_37n	-1	known	silent	c.246	p.E82	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660	72	0	0	35	34	48.57	-	-	-	C	75612979	T	C	75612979	2	2	174	1	0	0	0	0	0	0	0	1	2627	1606	56	5		5	CAMK2G	10	75612979	Silent	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	28647862	75612979	59921768	52	10476										
NPM3	0	genome.wustl.edu	37	chr10	103542241	103542241	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gctggggaactcaccatgggTtggcaggacagcttgaggtt	16	8	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	103542241	103542241	T	C	SNP	NPM3	ENST00000370110	human	ensembl	69_37n	-1	known	silent	c.318	p.Q106	0.865	pfam_Nucleoplasmin,superfamily_Nucleoplasmin_core	pfam_Nucleoplasmin,superfamily_Nucleoplasmin_core	-	no_errors	NPM3	HGNC	ENSG00000107833	13	0	0	10	12	54.55	-	-	-	C	103542241	T	C	103542241	2	2	174	1	0	0	0	0	0	0	0	1	10662	1722	60	5		5	NPM3	10	103542241	Silent	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	27929262	103542241	31992506	53	10477										
PSD	0	genome.wustl.edu	37	chr10	104165135	104165135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cagggtctgcgtgcacctttCgcaccagggccccgtgcttg	13	15	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	104165135	104165135	C	T	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	missense	c.2294	p.R765Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	110	0	0	58	38	39.58	-	-	-	T	104165135	C	T	104165135	3	4	174	1	0	0	0	0	1	0	0	0	12726	884	31	1	804	1	PSD	10	104165135	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	622894	104165135	31369612	54	10478										
SORCS3	0	genome.wustl.edu	37	chr10	107015559	107015559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	atgtcacacagctgacgttaGgtgagtgccactgggaactg	13	9	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	10	107015559	107015559	G	A	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.3337	p.A1113T	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	144	0	0	88	48	35.29	-	-	-	A	107015559	G	A	107015559	3	1	174	1	0	0	0	0	1	0	0	0	15021	1014	35	4	3431	4	SORCS3	10	107015559	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	2850424	107015559	28519188	55	10479										
FAT3	0	genome.wustl.edu	37	chr11	92531007	92531007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	atttctgtattttagggaacActgggaacatgtttaagatc	9	5	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	11	92531007	92531007	A	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.4828	p.T1610P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	171	1	0.58	119	66	35.48	-	-	-	C	92531007	A	C	92531007	3	2	174	1	0	0	0	0	1	0	0	0	5737	159	6	5	4862	5	FAT3	11	92531007	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09		92531007	42475509	56	10480										
DYNC2H1	0	genome.wustl.edu	37	chr11	103106512	103106512	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ctctgagaaaaacctgtttgGaagaatggaccaagtcagct	10	8	2	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	11	103106512	103106512	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	nonsense	c.9679	p.E3227*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	213	0	0	156	86	35.54	-	-	-	T	103106512	G	T	103106512	4	4	174	1	0	0	0	0	0	1	0	0	4881	1175	41	2	9925	2	DYNC2H1	11	103106512	Nonsense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	10575505	103106512	31900004	57	10481										
C12orf68	0	genome.wustl.edu	37	chr12	48578200	48578200	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttatgaccactgcgccccgcCagggcggcttgggcgtggtc	15	14	0	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	12	48578200	48578200	C	T	SNP	C12orf68	ENST00000316554	human	ensembl	69_37n	1	known	nonsense	c.295	p.Q99*	1.000	NULL	NULL	-	no_errors	C12orf68	HGNC	ENSG00000177875	8	0	0	12	6	33.33	-	-	-	T	48578200	C	T	48578200	4	4	174	1	0	0	0	0	0	1	0	0	1722	595	21	4	297	4	C12orf68	12	48578200	Nonsense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09		48578200	85273695	58	10482										
ESYT1	0	genome.wustl.edu	37	chr12	56531336	56531336	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gacctgattgccaaagaccgTttcttggggggactggtgaa	14	8	1	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	12	56531336	56531336	T	C	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	silent	c.2022	p.R674	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	205	0	0	154	103	39.92	-	-	-	C	56531336	T	C	56531336	2	2	174	1	0	0	0	0	0	0	0	1	5301	1712	60	5		5	ESYT1	12	56531336	Silent	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	7953136	56531336	77320559	59	10483										
POC1B	0	genome.wustl.edu	37	chr12	89818992	89818992	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tctaaagcatcagtcacagcGagaggtatgctcctttgact	9	10	3	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	12	89818992	89818992	G	T	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	silent	c.1278	p.L426	0.002	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1B	HGNC	ENSG00000139323	303	0	0	233	128	35.46	-	-	-	T	89818992	G	T	89818992	2	4	174	1	0	0	0	0	0	0	0	1	12250	1045	37	3		3	POC1B	12	89818992	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	33287656	89818992	44032903	60	10484										
GCN1L1	0	genome.wustl.edu	37	chr12	120591040	120591040	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ctgggagggggtggagagggCagcgatgagcttggcaacaa	20	6	0	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	12	120591040	120591040	C	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.4039	p.A1347S	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	19	0	0	9	8	47.06	-	-	-	A	120591040	C	A	120591040	3	1	174	1	0	0	0	0	1	0	0	0	6349	710	25	4	4080	4	GCN1L1	12	120591040	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	30772048	120591040	13260855	61	10485										
MTHFD1	0	genome.wustl.edu	37	chr14	64898551	64898551	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	agtaaatggagtgagaaggtTctctgacatccaaatccgaa	10	7	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	14	64898551	64898551	T	A	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.1634	p.F545Y	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	159	0	0	33	78	70.27	-	-	-	A	64898551	T	A	64898551	3	1	174	1	0	0	0	0	1	0	0	0	9999	1783	62	5	1524	5	MTHFD1	14	64898551	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09		64898551	42450989	62	10486										
KCNK10	0	genome.wustl.edu	37	chr14	88729861	88729861	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgcccgttagtggcgctcttGggctggcacaccggtgctgc	15	13	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	14	88729861	88729861	G	C	SNP	KCNK10	ENST00000312350	human	ensembl	69_37n	-1	known	silent	c.87	p.P29	1.000	prints_2pore_dom_K_chnl_TREK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433	45	0	0	9	29	76.32	-	-	-	C	88729861	G	C	88729861	2	2	174	1	0	0	0	0	0	0	0	1	8113	1335	47	4		4	KCNK10	14	88729861	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	23831310	88729861	18619679	63	10487										
MOAP1	0	genome.wustl.edu	37	chr14	93650587	93650587	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttctaaaagcctcaaagtcaTggtgcccgaaataatagact	7	9	3	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	14	93650587	93650587	T	A	SNP	MOAP1	ENST00000298894	human	ensembl	69_37n	-1	known	missense	c.1	p.M1L	0.005	NULL	NULL	-	no_errors	MOAP1	HGNC	ENSG00000165943	79	0	0	10	22	68.75	-	-	-	A	93650587	T	A	93650587	3	1	174	1	0	0	0	0	1	0	0	0	9752	1464	51	5	1058	5	MOAP1	14	93650587	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	4920726	93650587	13698953	64	10488										
TGM5	0	genome.wustl.edu	37	chr15	43525859	43525859	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	atcacctgtatggagagtggCtggttcacaacggctgctcc	12	11	2	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	15	43525859	43525859	C	T	SNP	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	silent	c.1902	p.Q634	0.996	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	101	0	0	71	33	31.73	-	-	-	T	43525859	C	T	43525859	2	4	174	1	0	0	0	0	0	0	0	1	15928	796	28	4		4	TGM5	15	43525859	Silent	SNP	C	TCGA-A8-A07L-01A-11W-A019-09		43525859	59005533	65	10489										
ARIH1	0	genome.wustl.edu	37	chr15	72855839	72855839	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgcaaatgtgggcgccaattTtggtaagcaagtgatttcct	11	7	0	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	15	72855839	72855839	T	C	SNP	ARIH1	ENST00000379887	human	ensembl	69_37n	1	known	silent	c.909	p.F303	0.999	pfam_Znf_C6HC,smart_Znf_C6HC,smart_Znf_RING	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH1	HGNC	ENSG00000166233	113	0	0	95	61	39.1	-	-	-	C	72855839	T	C	72855839	2	2	174	1	0	0	0	0	0	0	0	1	925	1838	64	5		5	ARIH1	15	72855839	Silent	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	29329980	72855839	29675553	66	10490										
ACSBG1	0	genome.wustl.edu	37	chr15	78485847	78485847	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cccactgcctcttccccaaaCcttcaggatcttttccagct	4	18	3	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	15	78485847	78485847	C	A	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	splice_site	c.663+1	e5+1	0.947	-	-	-	no_errors	ACSBG1	HGNC	ENSG00000103740	47	0	0	26	11	29.73	-	-	-	A	78485847	C	A	78485847	5	1	174	1	0	0	0	0	0	0	1	0	173	521	18	4	1550	4	ACSBG1	15	78485847	Splice_Site	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	5630008	78485847	24045545	67	10491										
BTBD1	0	genome.wustl.edu	37	chr15	83687554	83687554	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gttagctgtcccatcacaacTaaagccggtatcattctgtc	7	12	3	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	15	83687554	83687554	T	G	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	missense	c.1195	p.S399R	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	57	0	0	48	19	28.36	-	-	-	G	83687554	T	G	83687554	3	3	174	1	0	0	0	0	1	0	0	0	1545	1522	53	5	261	5	BTBD1	15	83687554	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	5201707	83687554	18843838	68	10492										
ADCY9	0	genome.wustl.edu	37	chr16	4163947	4163947	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttaaacctcctcatgcccagGatgccgcaaaggacggtgcc	10	14	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	16	4163947	4163947	G	C	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.1497	p.I499M	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	31	0	0	21	18	46.15	-	-	-	C	4163947	G	C	4163947	3	2	174	1	0	0	0	0	1	0	0	0	301	1164	41	2	2604	2	ADCY9	16	4163947	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09		4163947	86190806	69	10493										
SALL1	0	genome.wustl.edu	37	chr16	51175777	51175777	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccatggactcttccctgtcaAgtccgttgtgttctgaaagg	10	11	3	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	16	51175777	51175777	A	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.356	p.L119H	0.640	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	148	0	0	34	72	67.92	-	-	-	T	51175777	A	T	51175777	3	4	174	1	0	0	0	0	1	0	0	0	13896	72	3	5	3626	5	SALL1	16	51175777	Missense_Mutation	SNP	A	TCGA-A8-A07L-01A-11W-A019-09	47011830	51175777	39178976	70	10494										
HYDIN	0	genome.wustl.edu	37	chr16	70942229	70942229	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tactggcagcaagttcctagGatctcaaagttaaaggtttg	10	7	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	16	70942229	70942229	G	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.8319	p.I2773	0.997	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	41	0	0	79	15	15.96	-	-	-	A	70942229	G	A	70942229	2	1	174	1	0	0	0	0	0	0	0	1	7521	1164	41	2		2	HYDIN	16	70942229	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	19766452	70942229	19412524	71	10495										
ARHGEF15	0	genome.wustl.edu	37	chr17	8224297	8224298	+	Frame_Shift_Ins	INS	-	-	C													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttcttcaggcacccccaatgINScccccccaccctaatgcagg							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	17	8224297	8224298	-	C	INS	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	frame_shift_ins	c.2512_2513	p.P841fs	0.000:0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	33	0	0	31	4	11.43	-	-	-	C	8224298	-	C	8224297	7	5	174	1	0	1	1	0	0	0	0	0	900	1319	46	0	2570	0	ARHGEF15	17	8224297	Frame_Shift_Ins	INS	-	TCGA-A8-A07L-01A-11W-A019-09		8224297	72970913	72	10496										
SLC16A6	0	genome.wustl.edu	37	chr17	66267701	66267701	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cctctgataaagatgggtctGagcagtgctccgaagatgac	12	9	2	5			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	17	66267701	66267701	G	C	SNP	SLC16A6	ENST00000327268	human	ensembl	69_37n	-1	known	silent	c.600	p.L200	0.052	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	76	0	0	89	37	29.13	-	-	-	C	66267701	G	C	66267701	2	2	174	1	0	0	0	0	0	0	0	1	14501	1277	45	2		2	SLC16A6	17	66267701	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	58043404	66267701	14927509	73	10497										
ABCA6	0	genome.wustl.edu	37	chr17	67077227	67077227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ctgcttctaatttgtgaaagGtctgtgatagagggtaaacg	12	5	2	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	17	67077227	67077227	G	A	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.4676	p.T1559I	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	627	0	0	679	231	25.36	-	-	-	A	67077227	G	A	67077227	3	1	174	1	0	0	0	0	1	0	0	0	36	1261	44	4	189	4	ABCA6	17	67077227	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	809526	67077227	14117983	74	10498										
DSC2	0	genome.wustl.edu	37	chr18	28660146	28660146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cttctgcattttctttcatgCgaacagtctgtattggaggg	10	8	4	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	18	28660146	28660146	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479H	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	279	1	0.36	60	108	63.91	-	-	-	T	28660146	C	T	28660146	3	4	174	1	0	0	0	0	1	0	0	0	4801	768	27	1	1337	1	DSC2	18	28660146	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09		28660146	49417102	75	10499										
OR4F17	0	genome.wustl.edu	37	chr19	110808	110808	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ttattgtcataacagtggtaTctgactcccaccttcactct	5	12	4	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	110808	110808	T	A	SNP	OR4F17	ENST00000318050	human	ensembl	69_37n	1	known	missense	c.130	p.S44T	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F17	HGNC	ENSG00000176695	383	0	0	452	199	30.57	-	-	-	A	110808	T	A	110808	3	1	174	1	0	0	0	0	1	0	0	0	11135	1435	50	5	132	5	OR4F17	19	110808	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09		110808	59018175	76	10500										
TYK2	0	genome.wustl.edu	37	chr19	10463112	10463113	+	Frame_Shift_Ins	INS	-	-	G													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gcgggcctggctctcaccgtINSgggggggctctggctggagt							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	10463112	10463113	-	G	INS	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3316_3315	p.T1105fs	0.001:0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	30	0	0	17	3	15	-	-	-	G	10463113	-	G	10463112	7	5	174	1	0	1	1	0	0	0	0	0	16907	1696	59	0	259	0	TYK2	19	10463112	Frame_Shift_Ins	INS	-	TCGA-A8-A07L-01A-11W-A019-09	10352304	10463112	48665871	77	10501										
PRX	0	genome.wustl.edu	37	chr19	40901629	40901629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cctccacccgctctcccttgCccattttagcggctgggacc	8	19	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	40901629	40901629	C	T	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.2630	p.G877D	0.014	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	75	0	0	53	55	50.93	-	-	-	T	40901629	C	T	40901629	3	4	174	1	0	0	0	0	1	0	0	0	12722	739	26	4	1759	4	PRX	19	40901629	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	30438517	40901629	18227354	78	10502										
SERTAD3	0	genome.wustl.edu	37	chr19	40947861	40947861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgctcgggggcccaggctgcGctggactttgtctagggaga	17	10	1	1			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	40947861	40947861	G	A	SNP	SERTAD3	ENST00000322354	human	ensembl	69_37n	-1	known	missense	c.127	p.R43C	0.973	pfam_SERTA,pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD3	HGNC	ENSG00000167565	46	0	0	21	25	54.35	-	-	-	A	40947861	G	A	40947861	3	1	174	1	0	0	0	0	1	0	0	0	14210	1087	38	1	467	1	SERTAD3	19	40947861	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	46232	40947861	18181122	79	10503										
ZFP112	0	genome.wustl.edu	37	chr19	44831696	44831696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	actatggactctttgatgaaTgagaagacctgagctccaac	9	9	1	5			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	44831696	44831696	T	C	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	missense	c.2683	p.I895V	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	253	0	0	205	120	36.81	-	-	-	C	44831696	T	C	44831696	3	2	174	1	0	0	0	0	1	0	0	0	17734	1464	51	5	113	5	ZFP112	19	44831696	Missense_Mutation	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	3883835	44831696	14297287	80	10504										
PVRL2	0	genome.wustl.edu	37	chr19	45389459	45389459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccccctactttgatgctggcGcctcatgcactgagcaggta	10	14	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	45389459	45389459	G	A	SNP	PVRL2	ENST00000252483	human	ensembl	69_37n	1	known	missense	c.1330	p.A444T	0.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL2	HGNC	ENSG00000130202	39	0	0	16	10	38.46	-	-	-	A	45389459	G	A	45389459	3	1	174	1	0	0	0	0	1	0	0	0	12923	1087	38	1	1762	1	PVRL2	19	45389459	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	557763	45389459	13739524	81	10505										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325383	55325383	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	agaaaaatcactggcccttcTcagaggagcaagagaccctc	9	12	2	3			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	19	55325383	55325383	T	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	silent	c.1011	p.S337	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	227	0	0	183	113	38.05	-	-	-	A	55325383	T	A	55325383	2	1	174	1	0	0	0	0	0	0	0	1	8371	1538	54	5		5	KIR2DL4	19	55325383	Silent	SNP	T	TCGA-A8-A07L-01A-11W-A019-09	9935924	55325383	3803600	82	10506										
NFATC2	0	genome.wustl.edu	37	chr20	50092025	50092025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	tgttgtttttgggctccaagGgtatctccaggactttggtg	13	7	1	0			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	20	50092025	50092025	G	T	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	missense	c.1505	p.P502H	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	119	0	0	169	56	24.89	-	-	-	T	50092025	G	T	50092025	3	4	174	1	0	0	0	0	1	0	0	0	10434	1232	43	4	1348	4	NFATC2	20	50092025	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09		50092025	12933495	83	10507										
GNAS	0	genome.wustl.edu	37	chr20	57486002	57486003	+	RNA	INS	-	-	C													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	aacaaagcaacctttcccttINScccccgagtgattttgcgaa							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	20	57486002	57486003	-	C	INS	GNAS	ENST00000464624	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.083:0.111	-	-	-	no_errors	GNAS	HGNC	ENSG00000087460	25	0	0	33	4	10.81	-	-	-	C	57486003	-	C	57486002	6	5	174	0	1	1	1	0	0	0	0	0	6562	1798	62	0		0	GNAS	20	57486002	RNA	INS	-	TCGA-A8-A07L-01A-11W-A019-09	7393977	57486002	5539518	84	10508										
TAB3	0	genome.wustl.edu	37	chrX	30872538	30872538	+	Frame_Shift_Del	DEL	G	G	-													0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	atggaggttttggttgactaGatatccctcttgaaggagaa							TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	X	30872538	30872538	G	-	DEL	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	frame_shift_del	c.1244	p.S415fs	0.999	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	150	0	0	113	29	20.28	-	-	-	-	30872538	G	-	30872538	7	5	174	1	0	1	0	1	0	0	0	0	15589	942	33	0	918	0	TAB3	23	30872538	Frame_Shift_Del	DEL	G	TCGA-A8-A07L-01A-11W-A019-09		30872538	124398022	85	10509										
TAB3	0	genome.wustl.edu	37	chrX	30873405	30873405	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cagcaacaacagctggagctGagtgtggttcttgaactaaa	11	8	1	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	X	30873405	30873405	G	T	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	nonsense	c.377	p.S126*	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	171	0	0	136	66	32.67	-	-	-	T	30873405	G	T	30873405	4	4	174	1	0	0	0	0	0	1	0	0	15589	1294	45	2	1785	2	TAB3	23	30873405	Nonsense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	867	30873405	124397155	86	10510										
MED12	0	genome.wustl.edu	37	chrX	70339989	70339989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	gcagcaatctctgagaccaaGgttaagaagagacatgttga	11	7	1	4			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	X	70339989	70339989	G	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.522	p.K174N	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	230	0	0	113	36	24.16	-	-	-	T	70339989	G	T	70339989	3	4	174	1	0	0	0	0	1	0	0	0	9499	991	35	4	536	4	MED12	23	70339989	Missense_Mutation	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	39466584	70339989	84930571	87	10511										
ATRX	0	genome.wustl.edu	37	chrX	76849193	76849193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	ccccaatttcctctgccattCgaagaatttcaaagagaagt	6	11	2	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	X	76849193	76849193	C	G	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.6083	p.R2028P	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	304	0	0	240	40	14.29	-	-	-	G	76849193	C	G	76849193	3	3	174	1	0	0	0	0	1	0	0	0	1212	884	31	3	1435	3	ATRX	23	76849193	Missense_Mutation	SNP	C	TCGA-A8-A07L-01A-11W-A019-09	6509204	76849193	78421367	88	10512										
L1CAM	0	genome.wustl.edu	37	chrX	153128304	153128304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449438202247191	4	0.994628167771038	0.74002574002574	1.33204633204633	0.512325512325512	1	1	0	cccaggggcttgatgtccccGttgagcgatggctggctgct	15	12	0	2			TCGA-A8-A07L-01A-11W-A019-09	TCGA-A8-A07L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cc86f29-061e-4058-8e8f-4c48191f52aa	44a4c963-3b68-4537-a0da-e47fe5f1d7ac	X	153128304	153128304	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	silent	c.3594	p.N1198	0.796	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	22	0	0	15	7	31.82	-	-	-	A	153128304	G	A	153128304	2	1	174	1	0	0	0	0	0	0	0	1	8642	1136	40	1		1	L1CAM	23	153128304	Silent	SNP	G	TCGA-A8-A07L-01A-11W-A019-09	76279111	153128304	2142256	89	10513										
ANKRD13C	0	genome.wustl.edu	37	chr1	70758132	70758132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tctccatgatggccttatttCgaagaatatcctcttcactg	6	11	3	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	70758132	70758132	C	T	SNP	ANKRD13C	ENST00000370944	human	ensembl	69_37n	-1	known	missense	c.1154	p.R385Q	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454	143	0	0	176	46	20.72	-	-	-	T	70758132	C	T	70758132	3	4	175	1	0	0	0	0	1	0	0	0	643	884	31	1	491	1	ANKRD13C	1	70758132	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		70758132	178492489	1	10514										
MTMR11	0	genome.wustl.edu	37	chr1	149908094	149908094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tgctaggctgacgactcctgGgctccggcatcctattttcc	10	14	0	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	149908094	149908094	G	A	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.95	p.P32L	0.988	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	204	0	0	279	109	28.09	-	-	-	A	149908094	G	A	149908094	3	1	175	1	0	0	0	0	1	0	0	0	10012	1232	43	4	2137	4	MTMR11	1	149908094	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	79149962	149908094	99342527	2	10515										
AQP10	0	genome.wustl.edu	37	chr1	154293636	154293636	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	atagggtgtttccaccatggTcttcactcaggccccggctg	11	13	3	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	154293636	154293636	T	C	SNP	AQP10	ENST00000324978	human	ensembl	69_37n	1	known	missense	c.5	p.V2A	0.000	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP10	HGNC	ENSG00000143595	36	0	0	51	66	56.41	-	-	-	C	154293636	T	C	154293636	3	2	175	1	0	0	0	0	1	0	0	0	824	1667	58	5	7	5	AQP10	1	154293636	Missense_Mutation	SNP	T	TCGA-A8-A07O-01A-11W-A019-09	4385542	154293636	94956985	3	10516										
C1orf85	0	genome.wustl.edu	37	chr1	156263157	156263157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gccagggcctgtggaagcccCgaacgtcagattgaaggcac	14	12	1	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	156263157	156263157	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	69_37n	-1	known	missense	c.1009	p.G337R	0.999	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715	51	0	0	59	12	16.67	-	-	-	T	156263157	C	T	156263157	3	4	175	1	0	0	0	0	1	0	0	0	2082	652	23	1	219	1	C1orf85	1	156263157	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	1969521	156263157	92987464	4	10517										
TMEM131	0	genome.wustl.edu	37	chr2	98475800	98475802	+	In_Frame_Del	DEL	TGT	TGT	-													0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	aatgatgcatgaaaatgtgaTgttgtagcagatattgatac							TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	98475800	98475802	TGT	-	DEL	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	in_frame_del	c.450_448	p.T150in_frame_del	1.000:1.000:1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	128	0	0	138	39	21.91	-	-	-	-	98475802	TGT	-	98475800	7	5	175	1	0	1	0	1	0	0	0	0	16139	1451	51	0	5349	0	TMEM131	2	98475800	In_Frame_Del	DEL	TGT	TCGA-A8-A07O-01A-11W-A019-09		98475800	144723573	5	10518										
MARCH7	0	genome.wustl.edu	37	chr2	160605150	160605150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tgctgccaacagaccacaagCatctgcagcatcaagcagtg	9	13	2	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	160605150	160605150	C	T	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	missense	c.1349	p.A450V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	184	1	0.54	105	41	28.08	-	-	-	T	160605150	C	T	160605150	3	4	175	1	0	0	0	0	1	0	0	0	9377	710	25	4	1363	4	MARCH7	2	160605150	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	62129350	160605150	82594223	6	10519										
UQCRC1	0	genome.wustl.edu	37	chr3	48641015	48641015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	acctccagctgctgccagcaCcattcgaggggccttgtaat	10	14	0	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	48641015	48641015	C	G	SNP	UQCRC1	ENST00000203407	human	ensembl	69_37n	-1	known	missense	c.688	p.V230L	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC1	HGNC	ENSG00000010256	24	0	0	12	5	27.78	-	-	-	G	48641015	C	G	48641015	3	3	175	1	0	0	0	0	1	0	0	0	17116	507	18	4	786	4	UQCRC1	3	48641015	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		48641015	149381415	7	10520										
C3orf62	0	genome.wustl.edu	37	chr3	49311552	49311552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ggcatgtttgagtcagccttCaaatctctctccatatcttt	6	11	5	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	49311552	49311552	C	T	SNP	C3orf62	ENST00000424960	human	ensembl	69_37n	-1	known	missense	c.289	p.E97K	1.000	NULL	NULL	-	no_start_codon	C3orf62	HGNC	ENSG00000188315	56	0	0	43	9	17.31	-	-	-	T	49311552	C	T	49311552	3	4	175	1	0	0	0	0	1	0	0	0	2258	825	29	2	343	2	C3orf62	3	49311552	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	670537	49311552	148710878	8	10521										
CASR	0	genome.wustl.edu	37	chr3	121980842	121980842	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gttggcggcaccattggattCgctctgaaggctgggcagat	15	9	1	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	121980842	121980842	C	T	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	silent	c.960	p.F320	0.980	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	189	0	0	105	31	22.79	-	-	-	T	121980842	C	T	121980842	2	4	175	1	0	0	0	0	0	0	0	1	2707	883	31	1		1	CASR	3	121980842	Silent	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	72669290	121980842	76041588	9	10522										
HSPBAP1	0	genome.wustl.edu	37	chr3	122459670	122459670	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tgcagcgatcaaaaaatgcaGaaacagctgcatttaagtag	9	7	1	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	122459670	122459670	G	A	SNP	HSPBAP1	ENST00000306103	human	ensembl	69_37n	-1	known	missense	c.989	p.S330F	0.807	pfam_JmjC_dom,prints_HSPB1-associated_protein_1	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087	255	0	0	195	67	25.48	-	-	-	A	122459670	G	A	122459670	3	1	175	1	0	0	0	0	1	0	0	0	7479	942	33	2	481	2	HSPBAP1	3	122459670	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	478828	122459670	75562760	10	10523										
ACAD11	0	genome.wustl.edu	37	chr3	132378462	132378462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	catacctgtactgggcaatgGtcagcgtagcctcacgttcg	11	12	2	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	132378462	132378462	G	T	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.134	p.T45N	0.001	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	38	0	0	17	5	22.73	-	-	-	T	132378462	G	T	132378462	3	4	175	1	0	0	0	0	1	0	0	0	109	1261	44	4	2288	4	ACAD11	3	132378462	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	9918792	132378462	65643968	11	10524										
PPM1L	0	genome.wustl.edu	37	chr3	160474474	160474474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	cacccgtccatcttcgggatCttcgacgggcacgggggaga	14	13	2	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	160474474	160474474	C	G	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	1	known	missense	c.378	p.I126M	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	44	0	0	20	4	16.67	-	-	-	G	160474474	C	G	160474474	3	3	175	1	0	0	0	0	1	0	0	0	12421	903	32	2	380	2	PPM1L	3	160474474	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	28096012	160474474	37547956	12	10525										
NUDT6	0	genome.wustl.edu	37	chr4	123814333	123814333	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	actcaggacggacctgaattCtgattttataccagtctctt	7	10	3	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	4	123814333	123814333	C	T	SNP	NUDT6	ENST00000304430	human	ensembl	69_37n	-1	known	missense	c.601	p.E201K	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917	166	1	0.6	103	20	16.13	-	-	-	T	123814333	C	T	123814333	3	4	175	1	0	0	0	0	1	0	0	0	10816	922	32	2	353	2	NUDT6	4	123814333	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		123814333	67339943	13	10526										
FGFR4	0	genome.wustl.edu	37	chr5	176522628	176522628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ggccccgacctcagccccgaCggtcctcggagcagtgaggg	15	16	1	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	5	176522628	176522628	C	T	SNP	FGFR4	ENST00000511076	human	ensembl	69_37n	1	novel	missense	c.619	p.R207W	0.011	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGFR4	HGNC	ENSG00000160867	28	0	0	18	5	21.74	-	-	-	T	176522628	C	T	176522628	3	4	175	1	0	0	0	0	1	0	0	0	5914	535	19	1	1841	1	FGFR4	5	176522628	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		176522628	4392632	14	10527										
ATXN1	0	genome.wustl.edu	37	chr6	16328465	16328465	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gggtaggggccttctcctcgGaggaccggctggtggcgggg	21	10	1	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	16328465	16328465	G	C	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.77	p.S26C	0.892	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	26	0	0	46	10	17.86	-	-	-	C	16328465	G	C	16328465	3	2	175	1	0	0	0	0	1	0	0	0	1213	1174	41	2	2378	2	ATXN1	6	16328465	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		16328465	154786602	15	10528										
DNAH11	0	genome.wustl.edu	37	chr7	21805205	21805205	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ttgaggaaaccaagggaattGaggtatgccgtgtcagcctg	14	7	1	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	7	21805205	21805205	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.9121	p.E3041K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	48	0	0	31	24	43.64	-	-	-	A	21805205	G	A	21805205	3	1	175	1	0	0	0	0	1	0	0	0	4635	1291	45	2	9340	2	DNAH11	7	21805205	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		21805205	137333458	16	10529										
SH2D4A	0	genome.wustl.edu	37	chr8	19231145	19231145	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	agcgggctaccagaaaacctCagacaccatagccccctggt	9	15	1	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	19231145	19231145	C	T	SNP	SH2D4A	ENST00000265807	human	ensembl	69_37n	1	known	missense	c.1022	p.S341L	0.591	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D4A	HGNC	ENSG00000104611	115	0	0	74	37	33.33	-	-	-	T	19231145	C	T	19231145	3	4	175	1	0	0	0	0	1	0	0	0	14323	838	29	2	1098	2	SH2D4A	8	19231145	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		19231145	127132877	17	10530										
PREX2	0	genome.wustl.edu	37	chr8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tttgaaagaaagagaacggcGgaaaggtgggtgtatgaatt	15	2	0	4			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	68965476	68965476	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.1088	p.R363Q	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	334	0	0	458	67	12.76	-	-	-	A	68965476	G	A	68965476	3	1	175	1	0	0	0	0	1	0	0	0	12558	1116	39	1	1122	1	PREX2	8	68965476	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	49734331	68965476	77398546	18	10531										
CYP11B2	0	genome.wustl.edu	37	chr8	143994076	143994076	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ctagccagcgctggggattaTaccgctcaggcctcgggaac	13	13	1	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	143994076	143994076	T	A	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1268	p.Y423F	0.852	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	49	0	0	97	13	11.82	-	-	-	A	143994076	T	A	143994076	3	1	175	1	0	0	0	0	1	0	0	0	4177	1406	49	5	251	5	CYP11B2	8	143994076	Missense_Mutation	SNP	T	TCGA-A8-A07O-01A-11W-A019-09	75028600	143994076	2369946	19	10532										
PCSK5	0	genome.wustl.edu	37	chr9	78772039	78772039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gaagtggaccaccgttccccGgcagcacgtgtgtgtggaga	15	11	0	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	9	78772039	78772039	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.1391	p.R464Q	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	83	0	0	75	31	29.25	-	-	-	A	78772039	G	A	78772039	3	1	175	1	0	0	0	0	1	0	0	0	11676	1116	39	1	1433	1	PCSK5	9	78772039	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		78772039	62441392	20	10533										
MUC5B	0	genome.wustl.edu	37	chr11	1264973	1264973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gaccacagccacggccacacCcagcaagacccgcacctcga	8	20	0	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	1264973	1264973	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.6872	p.P2291L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	34	0	0	31	17	35.42	-	-	-	T	1264973	C	T	1264973	3	4	175	1	0	0	0	0	1	0	0	0	10051	623	22	4	6994	4	MUC5B	11	1264973	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		1264973	133741543	21	10534										
ATM	0	genome.wustl.edu	37	chr11	108129723	108129723	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ttaattgcagaagagtccaaAtaagattgcatctggctttt	8	6	1	3			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	108129723	108129723	A	C	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.2387	p.N796T	0.351	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	49	0	0	38	15	28.3	-	-	-	C	108129723	A	C	108129723	3	2	175	1	0	0	0	0	1	0	0	0	1113	101	4	5	2445	5	ATM	11	108129723	Missense_Mutation	SNP	A	TCGA-A8-A07O-01A-11W-A019-09	106864750	108129723	26876793	22	10535										
SCN3B	0	genome.wustl.edu	37	chr11	123513189	123513189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ttagggggatcagccgcgtcGtcttcacaaagggccgatgc	14	11	3	0			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	123513189	123513189	G	A	SNP	SCN3B	ENST00000299333	human	ensembl	69_37n	-1	known	missense	c.410	p.T137M	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN3B	HGNC	ENSG00000166257	88	0	0	53	26	32.91	-	-	-	A	123513189	G	A	123513189	3	1	175	1	0	0	0	0	1	0	0	0	14007	1145	40	1	249	1	SCN3B	11	123513189	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	15383466	123513189	11493327	23	10536										
CHD4	0	genome.wustl.edu	37	chr12	6702335	6702335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	atagagcccaaaatagccatGtcaatggtgatcaattcata	7	8	3	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	6702335	6702335	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.2574	p.D858	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	246	0	0	210	79	27.24	-	-	-	A	6702335	G	A	6702335	2	1	175	1	0	0	0	0	0	0	0	1	3356	1368	48	4		4	CHD4	12	6702335	Silent	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		6702335	127149560	24	10537										
LRP6	0	genome.wustl.edu	37	chr12	12311946	12311946	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	cacataatccaaatggccctGaatgatggtgcggttttggc	11	9	0	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	12311946	12311946	G	T	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.2608	p.Q870K	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	139	0	0	147	35	19.23	-	-	-	T	12311946	G	T	12311946	3	4	175	1	0	0	0	0	1	0	0	0	9028	1299	45	2	2281	2	LRP6	12	12311946	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	5609611	12311946	121539949	25	10538										
SP1	0	genome.wustl.edu	37	chr12	53776064	53776064	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	aatggctggcagatcatctcTtcctcctctggggctacccc	9	15	3	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	53776064	53776064	T	C	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	silent	c.333	p.S111	0.909	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	44	0	0	37	21	36.21	-	-	-	C	53776064	T	C	53776064	2	2	175	1	0	0	0	0	0	0	0	1	15048	1596	56	5		5	SP1	12	53776064	Silent	SNP	T	TCGA-A8-A07O-01A-11W-A019-09	41464118	53776064	80075831	26	10539										
TCHP	0	genome.wustl.edu	37	chr12	110346447	110346447	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	aagcagcggtgggagctagaGaggctggaggaagagcgaaa	19	5	0	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	110346447	110346447	G	A	SNP	TCHP	ENST00000312777	human	ensembl	69_37n	1	known	silent	c.756	p.E252	0.320	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437	23	0	0	25	9	26.47	-	-	-	A	110346447	G	A	110346447	2	1	175	1	0	0	0	0	0	0	0	1	15797	933	33	2		2	TCHP	12	110346447	Silent	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	56570383	110346447	23505448	27	10540										
NBEA	0	genome.wustl.edu	37	chr13	35733461	35733463	+	In_Frame_Del	DEL	AGT	AGT	-													0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ggaagtggtgtacatgtggaAgtacatgatcttttagtaga							TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	13	35733461	35733463	AGT	-	DEL	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	in_frame_del	c.3153_3155	p.V1052in_frame_del	1.000:1.000:1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	191	0	0	85	24	22.02	-	-	-	-	35733463	AGT	-	35733461	7	5	175	1	0	1	0	1	0	0	0	0	10259	69	3	0	3239	0	NBEA	13	35733461	In_Frame_Del	DEL	AGT	TCGA-A8-A07O-01A-11W-A019-09		35733461	79436417	28	10541										
CASC5	0	genome.wustl.edu	37	chr15	40921499	40921499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	agatgggagaataacaataaGggagttctttatacttctcc	9	6	2	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	40921499	40921499	G	C	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.5690	p.R1897T	0.524	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	107	0	0	85	35	29.17	-	-	-	C	40921499	G	C	40921499	3	2	175	1	0	0	0	0	1	0	0	0	2688	1000	35	4	5740	4	CASC5	15	40921499	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		40921499	61609893	29	10542										
PARP6	0	genome.wustl.edu	37	chr15	72559136	72559136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	attatctccctccgagtcgtCatcattccagaactggcctt	6	14	3	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	72559136	72559136	C	T	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	132	0	0	128	35	21.47	-	-	-	T	72559136	C	T	72559136	3	4	175	1	0	0	0	0	1	0	0	0	11537	826	29	2	1945	2	PARP6	15	72559136	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	31637637	72559136	29972256	30	10543										
ATXN2L	0	genome.wustl.edu	37	chr16	28842080	28842080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ctggacaacagcagccctggCccaggttctgaggcccgtgg	14	14	1	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	28842080	28842080	C	T	SNP	ATXN2L	ENST00000565971	human	ensembl	69_37n	1	known	missense	c.620	p.A207V	1.000	NULL	NULL	-	no_start_codon	ATXN2L	HGNC	ENSG00000168488	37	0	0	21	13	38.24	-	-	-	T	28842080	C	T	28842080	3	4	175	1	0	0	0	0	1	0	0	0	1216	726	26	4	1213	4	ATXN2L	16	28842080	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		28842080	61512673	31	10544										
MLYCD	0	genome.wustl.edu	37	chr16	83948559	83948560	+	Splice_Site	DEL	AG	AG	-													0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ccaccccaaccatgctttacAgagagagtttcctcaccttg							TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	83948559	83948560	AG	-	DEL	MLYCD	ENST00000262430	human	ensembl	69_37n	1	known	splice_site_del	c.949-2_949-1	e5-1	1.000:1.000	-	-	-	no_errors	MLYCD	HGNC	ENSG00000103150	93	0	0	78	38	31.93	-	-	-	-	83948560	AG	-	83948559	8	5	175	1	0	1	0	1	0	0	1	0	9709	202	7	0	965	0	MLYCD	16	83948559	Splice_Site	DEL	AG	TCGA-A8-A07O-01A-11W-A019-09	55106479	83948559	6406194	32	10545										
TP53	0	genome.wustl.edu	37	chr17	7579311	7579311	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	cagcccctcagggcaactgaCcgtgcaagtcacagacttgg	11	14	2	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	17	7579311	7579311	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.375+1	e3+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	150	0	0	131	76	36.71	-	-	-	T	7579311	C	T	7579311	5	4	175	1	0	0	0	0	0	0	1	0	16477	521	18	4	926	4	TP53	17	7579311	Splice_Site	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		7579311	73615899	33	10546										
LAMA1	0	genome.wustl.edu	37	chr18	7015822	7015822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gacacactctccagtttctgGgtcgcaggtattctgagtgt	11	10	3	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	18	7015822	7015822	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.3025	p.P1009S	0.751	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	97	0	0	106	24	18.32	-	-	-	A	7015822	G	A	7015822	3	1	175	1	0	0	0	0	1	0	0	0	8659	1232	43	4	6370	4	LAMA1	18	7015822	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		7015822	71061426	34	10547										
MUC16	0	genome.wustl.edu	37	chr19	9063731	9063731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	aaaggacttgtatgggtgttCatggttatttctgctgattc	11	5	2	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	9063731	9063731	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.23715	p.M7905I	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	163	1	0.61	161	83	34.02	-	-	-	T	9063731	C	T	9063731	3	4	175	1	0	0	0	0	1	0	0	0	10045	826	29	2	20136	2	MUC16	19	9063731	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09		9063731	50065252	35	10548										
MUC16	0	genome.wustl.edu	37	chr19	9065839	9065839	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tgtggctttggatgtctctgAgtcagctaaggcagaggaag	15	6	2	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	9065839	9065839	A	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.21607	p.S7203A	0.007	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	293	0	0	268	139	33.9	-	-	-	C	9065839	A	C	9065839	3	2	175	1	0	0	0	0	1	0	0	0	10045	304	11	5	22244	5	MUC16	19	9065839	Missense_Mutation	SNP	A	TCGA-A8-A07O-01A-11W-A019-09	2108	9065839	50063144	36	10549										
SPHK2	0	genome.wustl.edu	37	chr19	49131440	49131440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	tgctgaacgggctcctagatCgccctgactgggaggaagct	14	11	0	3			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	49131440	49131440	C	T	SNP	SPHK2	ENST00000443164	human	ensembl	69_37n	1	known	missense	c.964	p.R322C	0.977	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176	14	0	0	10	10	47.62	-	-	-	T	49131440	C	T	49131440	3	4	175	1	0	0	0	0	1	0	0	0	15138	884	31	1	796	1	SPHK2	19	49131440	Missense_Mutation	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	40065601	49131440	9997543	37	10550										
DLGAP4	0	genome.wustl.edu	37	chr20	35060254	35060254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	ggccttcgcccgcgaggcccGcttccccgggcagaacaccc	12	20	0	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	35060254	35060254	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.134	p.R45H	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	36	0	0	29	14	31.82	-	-	-	A	35060254	G	A	35060254	3	1	175	1	0	0	0	0	1	0	0	0	4598	1087	38	1	136	1	DLGAP4	20	35060254	Missense_Mutation	SNP	G	TCGA-A8-A07O-01A-11W-A019-09		35060254	27965266	38	10551										
SALL4	0	genome.wustl.edu	37	chr20	50400810	50400810	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	acgcaagttctcccttagctGaccgcaatcttgttttcttc	6	13	3	1			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	50400810	50400810	G	A	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	silent	c.3156	p.V1052	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	52	0	0	87	24	21.62	-	-	-	A	50400810	G	A	50400810	2	1	175	1	0	0	0	0	0	0	0	1	13899	1277	45	2		2	SALL4	20	50400810	Silent	SNP	G	TCGA-A8-A07O-01A-11W-A019-09	15340556	50400810	12624710	39	10552										
PCMTD2	0	genome.wustl.edu	37	chr20	62891426	62891426	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.0231543973143692	2.53211009174312	1.89908256880734	2.62949894142555	0.00190521552750655	0.0414467378930249	6	gagcaggctttcagagctatCgatcgtgcagactattatct	10	9	2	2			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	62891426	62891426	C	T	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	1	known	silent	c.108	p.I36	0.609	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	101	0	0	150	30	16.57	-	-	-	T	62891426	C	T	62891426	2	4	175	1	0	0	0	0	0	0	0	1	11660	874	31	1		1	PCMTD2	20	62891426	Silent	SNP	C	TCGA-A8-A07O-01A-11W-A019-09	12490616	62891426	134094	40	10553										
CELA2A	0	genome.wustl.edu	37	chr1	15793991	15793991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aactactaccacaagccctcCgtcttcacgcgggtctccaa	6	17	3	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	15793991	15793991	C	T	SNP	CELA2A	ENST00000359621	human	ensembl	69_37n	1	known	silent	c.750	p.S250	0.987	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2A	HGNC	ENSG00000142615	87	0	0	12	11	47.83	-	-	-	T	15793991	C	T	15793991	2	4	176	1	0	0	0	0	0	0	0	1	3240	639	23	1		1	CELA2A	1	15793991	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		15793991	233456630	1	10554										
DMBX1	0	genome.wustl.edu	37	chr1	46976927	46976927	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ggggctgacagcaaggggctGggctgcaagaggggcagccc	20	10	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	46976927	46976927	G	T	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	1	known	silent	c.669	p.L223	0.973	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	65	0	0	11	4	26.67	-	-	-	T	46976927	G	T	46976927	2	4	176	1	0	0	0	0	0	0	0	1	4614	1335	47	4		4	DMBX1	1	46976927	Silent	SNP	G	TCGA-A8-A07P-01A-11W-A019-09	31182936	46976927	202273694	2	10555										
KPRP	0	genome.wustl.edu	37	chr1	152733785	152733785	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tgctggagtgaaaggggaagCaaagagtgcttatttttaaa	13	3	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	152733785	152733785	C	A	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	missense	c.1721	p.A574E	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	145	0	0	35	13	27.08	-	-	-	A	152733785	C	A	152733785	3	1	176	1	0	0	0	0	1	0	0	0	8489	710	25	4	1723	4	KPRP	1	152733785	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	105756858	152733785	96516836	3	10556										
ITPKB	0	genome.wustl.edu	37	chr1	226825450	226825450	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tcagccggtcccgataggcgAtctgggaatagaaagaggac	14	9	2	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	226825450	226825450	A	G	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.2555	p.I852T	0.053	pfam_IPK	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	45	0	0	4	8	66.67	-	-	-	G	226825450	A	G	226825450	3	3	176	1	0	0	0	0	1	0	0	0	7972	347	12	5	293	5	ITPKB	1	226825450	Missense_Mutation	SNP	A	TCGA-A8-A07P-01A-11W-A019-09	74091665	226825450	22425171	4	10557										
CMPK2	0	genome.wustl.edu	37	chr2	6990088	6990088	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gccaggattctccatccgctGgtaggacatttctaccctgg	10	13	2	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	6990088	6990088	G	A	SNP	CMPK2	ENST00000256722	human	ensembl	69_37n	-1	novel	nonsense	c.1243	p.Q415*	0.838	pirsf_UMP-CMP_kinase_mit	pirsf_UMP-CMP_kinase_mit	-	no_errors	CMPK2	HGNC	ENSG00000134326	319	0	0	85	34	28.57	-	-	-	A	6990088	G	A	6990088	4	1	176	1	0	0	0	0	0	1	0	0	3611	1357	47	4	110	4	CMPK2	2	6990088	Nonsense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		6990088	236209285	5	10558										
HADHA	0	genome.wustl.edu	37	chr2	26417472	26417472	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	atgacttcagacatcatgggCgcaagacacctggtagtata	10	9	2	3			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	26417472	26417472	C	T	SNP	HADHA	ENST00000380649	human	ensembl	69_37n	-1	known	silent	c.1656	p.A552	0.629	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754	92	0	0	35	10	22.22	-	-	-	T	26417472	C	T	26417472	2	4	176	1	0	0	0	0	0	0	0	1	6994	755	27	1		1	HADHA	2	26417472	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	19427384	26417472	216781901	6	10559										
CTNNA2	0	genome.wustl.edu	37	chr2	80136769	80136769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cagcgaggccaggttccggcCgtccctggaggagaggctgg	18	12	0	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	80136769	80136769	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1004	p.P335L	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	116	0	0	27	5	15.62	-	-	-	T	80136769	C	T	80136769	3	4	176	1	0	0	0	0	1	0	0	0	4045	652	23	1		1	CTNNA2	2	80136769	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	53719297	80136769	163062604	7	10560										
FABP1	0	genome.wustl.edu	37	chr2	88425708	88425708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ctcctaccttgactttctccCctgtcattgtctccagctca	4	17	4	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	88425708	88425708	C	T	SNP	FABP1	ENST00000295834	human	ensembl	69_37n	-1	known	missense	c.227	p.G76E	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP1	HGNC	ENSG00000163586	979	0	0	271	113	29.43	-	-	-	T	88425708	C	T	88425708	3	4	176	1	0	0	0	0	1	0	0	0	5395	623	22	4	168	4	FABP1	2	88425708	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	8288939	88425708	154773665	8	10561										
AFF3	0	genome.wustl.edu	37	chr2	100623894	100623894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tgcctaaagtgttctggatcCggttggagagttcatccccc	11	11	2	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	100623894	100623894	C	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.278	p.R93Q	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	281	0	0	79	47	37.3	-	-	-	T	100623894	C	T	100623894	3	4	176	1	0	0	0	0	1	0	0	0	358	652	23	1	3557	1	AFF3	2	100623894	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	12198186	100623894	142575479	9	10562										
SLC20A1	0	genome.wustl.edu	37	chr2	113405016	113405016	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gcaaaggggcaggagggtgtCaagtggtctgaactgataaa	16	5	2	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	113405016	113405016	C	T	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	silent	c.450	p.V150	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	292	0	0	67	29	30.21	-	-	-	T	113405016	C	T	113405016	2	4	176	1	0	0	0	0	0	0	0	1	14527	813	29	2		2	SLC20A1	2	113405016	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	12781122	113405016	129794357	10	10563										
LY75	0	genome.wustl.edu	37	chr2	160628389	160628391	+	In_Frame_Del	DEL	TTC	TTC	-													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aattgaacaggatattcattTtcttctccaactaccaaaac							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	160628389	160628391	TTC	-	DEL	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	in_frame_del	c.5595_5593	p.E1865in_frame_del	1.000:1.000:1.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	328	0	0	82	33	28.45	-	-	-	-	160628391	TTC	-	160628389	7	5	176	1	0	1	0	1	0	0	0	0	9166	1838	64	0		0	LY75	2	160628389	In_Frame_Del	DEL	TTC	TCGA-A8-A07P-01A-11W-A019-09	47223373	160628389	82570984	11	10564										
C3orf24	0	genome.wustl.edu	37	chr3	10146188	10146188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	actgaggcggatgggctgggGcttcctgaccagtcctttgt	15	10	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	3	10146188	10146188	G	A	SNP	C3orf24	ENST00000450660	human	ensembl	69_37n	-1	known	missense	c.271	p.P91S	1.000	NULL	NULL	-	no_errors	C3orf24	HGNC	ENSG00000163705	105	0	0	58	38	39.18	-	-	-	A	10146188	G	A	10146188	3	1	176	1	0	0	0	0	1	0	0	0	2237	1203	42	4	266	4	C3orf24	3	10146188	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		10146188	187876242	12	10565										
TP63	0	genome.wustl.edu	37	chr3	189582203	189582203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gagctgagccgtgaattcaaCgagggtaagcagaatttgaa	13	6	1	4			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	3	189582203	189582203	C	T	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	silent	c.762	p.N254	0.236	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	307	0	0	55	43	43.88	-	-	-	T	189582203	C	T	189582203	2	4	176	1	0	0	0	0	0	0	0	1	16488	535	19	1		1	TP63	3	189582203	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	179436015	189582203	8440227	13	10566										
STIM2	0	genome.wustl.edu	37	chr4	27009202	27009202	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aaagaatttgaactgagaagCagttggtctgttccagatgc	11	6	1	4			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	27009202	27009202	C	T	SNP	STIM2	ENST00000382009	human	ensembl	69_37n	1	known	silent	c.1290	p.S430	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689	162	0	0	40	13	24.53	-	-	-	T	27009202	C	T	27009202	2	4	176	1	0	0	0	0	0	0	0	1	15375	709	25	4		4	STIM2	4	27009202	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		27009202	164145074	14	10567										
ATP8A1	0	genome.wustl.edu	37	chr4	42416696	42416696	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tacaagttcacgtggttcttCttaaagacgttcttgagcag	9	8	4	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	42416696	42416696	C	A	SNP	ATP8A1	ENST00000381668	human	ensembl	69_37n	-1	known	missense	c.3345	p.K1115N	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A1	HGNC	ENSG00000124406	256	0	0	102	13	11.3	-	-	-	A	42416696	C	A	42416696	3	1	176	1	0	0	0	0	1	0	0	0	1196	912	32	2	157	2	ATP8A1	4	42416696	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	15407494	42416696	148737580	15	10568										
STOX2	0	genome.wustl.edu	37	chr4	184932355	184932355	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tctgaggaaggggcaaacaaGaacacagaggaggagaaaaa	14	5	1	4			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	184932355	184932355	G	T	SNP	STOX2	ENST00000506529	human	ensembl	69_37n	1	known	nonsense	c.430	p.E144*	0.231	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STOX2	HGNC	ENSG00000173320	127	1	0.78	24	9	27.27	-	-	-	T	184932355	G	T	184932355	4	4	176	1	0	0	0	0	0	1	0	0	15411	933	33	2	2374	2	STOX2	4	184932355	Nonsense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09	142515659	184932355	6221921	16	10569										
GRM6	0	genome.wustl.edu	37	chr5	178408823	178408823	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	accgaggcactcaggctcaaGgacacggttagcgtggttgt	14	10	2	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	5	178408823	178408823	G	T	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	silent	c.2469	p.S823	1.000	pfam_GPCR_3_C,prints_GPCR_3_mtglu_rcpt,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	72	0	0	26	9	25.71	-	-	-	T	178408823	G	T	178408823	2	4	176	1	0	0	0	0	0	0	0	1	6852	987	35	4		4	GRM6	5	178408823	Silent	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		178408823	2506437	17	10570										
RAD21	0	genome.wustl.edu	37	chr8	117875465	117875466	+	Frame_Shift_Del	DEL	AG	AG	-													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gattcgaactactcccagtaAgagatgtcctgatgtccgta							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	8	117875465	117875466	AG	-	DEL	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	frame_shift_del	c.178_177	p.L60fs	1.000:0.978	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	445	0	0	293	88	23.1	-	-	-	-	117875466	AG	-	117875465	7	5	176	1	0	1	0	1	0	0	0	0	13064	69	3	0	1765	0	RAD21	8	117875465	Frame_Shift_Del	DEL	AG	TCGA-A8-A07P-01A-11W-A019-09		117875465	28488557	18	10571										
KDM4C	0	genome.wustl.edu	37	chr9	6814672	6814672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ggattacgaagatttggagcGcaagtactggaagaacttaa	12	5	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	6814672	6814672	G	A	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.362	p.R121H	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	198	0	0	90	45	33.33	-	-	-	A	6814672	G	A	6814672	3	1	176	1	0	0	0	0	1	0	0	0	8184	1087	38	1	442	1	KDM4C	9	6814672	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		6814672	134398759	19	10572										
SETX	0	genome.wustl.edu	37	chr9	135211712	135211712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	agcttttgtagttggtagtaTcatacatgtgtgagggcaga	13	4	1	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	135211712	135211712	T	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.689	p.D230G	0.996	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	278	0	0	104	51	32.9	-	-	-	C	135211712	T	C	135211712	3	2	176	1	0	0	0	0	1	0	0	0	14229	1435	50	5	7428	5	SETX	9	135211712	Missense_Mutation	SNP	T	TCGA-A8-A07P-01A-11W-A019-09	128397040	135211712	6001719	20	10573										
OR51G2	0	genome.wustl.edu	37	chr11	4936757	4936757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	taaaaagaattgtgcagttgCccgggatggaaaccagatac	11	7	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	4936757	4936757	C	T	SNP	OR51G2	ENST00000322013	human	ensembl	69_37n	-1	known	missense	c.137	p.G46D	0.684	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51G2	HGNC	ENSG00000176893	170	0	0	61	42	40.38	-	-	-	T	4936757	C	T	4936757	3	4	176	1	0	0	0	0	1	0	0	0	11172	739	26	4	811	4	OR51G2	11	4936757	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		4936757	130069759	21	10574										
P2RX3	0	genome.wustl.edu	37	chr11	57114069	57114069	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gtacgggacacagccattgaGtcctcggtggtaaccaaggt	13	10	0	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	57114069	57114069	G	C	SNP	P2RX3	ENST00000263314	human	ensembl	69_37n	1	known	missense	c.171	p.E57D	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991	130	0	0	30	19	38.78	-	-	-	C	57114069	G	C	57114069	3	2	176	1	0	0	0	0	1	0	0	0	11414	1020	36	4	177	4	P2RX3	11	57114069	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09	52177312	57114069	77892447	22	10575										
ATM	0	genome.wustl.edu	37	chr11	108164150	108164151	+	Frame_Shift_Del	DEL	GC	GC	-													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	catgttgtttttaaggatttGcgtattactcagcaaaaaat							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	108164150	108164151	GC	-	DEL	ATM	ENST00000278616	human	ensembl	69_37n	1	known	frame_shift_del	c.4722_4723	p.R1575fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	416	0	0	60	57	47.9	-	-	-	-	108164151	GC	-	108164150	7	5	176	1	0	1	0	1	0	0	0	0	1113	1310	46	0	4840	0	ATM	11	108164150	Frame_Shift_Del	DEL	GC	TCGA-A8-A07P-01A-11W-A019-09	51050081	108164150	26842366	23	10576	89	2								
ATM	0	genome.wustl.edu	37	chr11	108164152	108164152	+	Missense_Mutation	SNP	G	G	T													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tgttgtttttaaggatttgcGtattactcagcaaaaaatca							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	108164152	108164152	G	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.4724	p.R1575L	0.997	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	438	0	0	63	62	48.82	-	-	-	T	108164152	G	T	108164152	3	4	176	1	0	0	0	0	1	0	0	0	1113	1145	40	3	4842	3	ATM	11	108164152	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09	2	108164152	26842364	24	10577	89	2								
MLL	0	genome.wustl.edu	37	chr11	118350902	118350902	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ttcctaggatgagaaaatgtCagaatctacaatggatgcct	9	7	2	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	118350902	118350902	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	nonsense	c.3583	p.Q1195*	1.000	pirsf_MeTrfase_trithorax,pfscan_Znf_CXXC	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	223	0	0	45	42	48.28	-	-	-	T	118350902	C	T	118350902	4	4	176	1	0	0	0	0	0	1	0	0	9691	827	29	2	3605	2	MLL	11	118350902	Nonsense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	10186750	118350902	16655614	25	10578										
MRPS35	0	genome.wustl.edu	37	chr12	27890496	27890496	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cctttaaggaggcagaattaCgattatgcagtgtatctact	9	7	1	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	27890496	27890496	C	T	SNP	MRPS35	ENST00000538315	human	ensembl	69_37n	1	known	nonsense	c.547	p.R183*	0.950	NULL	NULL	-	no_errors	MRPS35	HGNC	ENSG00000061794	142	0	0	59	33	35.87	-	-	-	T	27890496	C	T	27890496	4	4	176	1	0	0	0	0	0	1	0	0	9916	547	19	1	683	1	MRPS35	12	27890496	Nonsense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		27890496	105961399	26	10579										
AQP6	0	genome.wustl.edu	37	chr12	50368232	50368232	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ggctccccggccaccatgatTgggatctctgtggcactggg	14	13	1	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	50368232	50368232	T	A	SNP	AQP6	ENST00000315520	human	ensembl	69_37n	1	known	silent	c.528	p.I176	0.975	pfam_MIP,superfamily_Aquaporin-like,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_6,tigrfam_Aquaporin	-	no_errors	AQP6	HGNC	ENSG00000086159	115	0	0	44	16	26.67	-	-	-	A	50368232	T	A	50368232	2	1	176	1	0	0	0	0	0	0	0	1	832	1800	63	5		5	AQP6	12	50368232	Silent	SNP	T	TCGA-A8-A07P-01A-11W-A019-09	22477736	50368232	83483663	27	10580										
GLI1	0	genome.wustl.edu	37	chr12	57859576	57859576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cctctcttgccctaggatccCctgttggggatgctggatgg	13	12	1	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	57859576	57859576	C	T	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	silent	c.630	p.P210	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	344	0	0	97	54	35.76	-	-	-	T	57859576	C	T	57859576	2	4	176	1	0	0	0	0	0	0	0	1	6489	610	22	4		4	GLI1	12	57859576	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	7491344	57859576	75992319	28	10581										
WDR66	0	genome.wustl.edu	37	chr12	122437780	122437780	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cacaagagctttgaggtgctCggttataccaactccaaagg	10	10	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	122437780	122437780	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	silent	c.3165	p.L1055	0.444	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	116	0	0	77	30	28.04	-	-	-	T	122437780	C	T	122437780	2	4	176	1	0	0	0	0	0	0	0	1	17414	871	31	1		1	WDR66	12	122437780	Silent	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	64578204	122437780	11414115	29	10582										
SLC15A4	0	genome.wustl.edu	37	chr12	129285502	129285502	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	tagacgacgttgccgatggtCtgattaatggttttctcttt	10	7	2	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	129285502	129285502	C	A	SNP	SLC15A4	ENST00000266771	human	ensembl	69_37n	-1	known	missense	c.1311	p.Q437H	1.000	pfam_Oligopeptide_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_Oligopeptide_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A4	HGNC	ENSG00000139370	79	0	0	40	18	31.03	-	-	-	A	129285502	C	A	129285502	3	1	176	1	0	0	0	0	1	0	0	0	14490	912	32	2	434	2	SLC15A4	12	129285502	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	6847722	129285502	4566393	30	10583										
USPL1	0	genome.wustl.edu	37	chr13	31232560	31232561	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cagctcataatagaaacactINSataactgatttacaaccttc							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	13	31232560	31232561	-	G	INS	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	frame_shift_ins	c.2346_2347	p.I782fs	0.000:0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	212	0	0	94	52	35.62	-	-	-	G	31232561	-	G	31232560	7	5	176	1	0	1	1	0	0	0	0	0	17189	1509	53	0	2376	0	USPL1	13	31232560	Frame_Shift_Ins	INS	-	TCGA-A8-A07P-01A-11W-A019-09		31232560	83937318	31	10584										
C13orf33	0	genome.wustl.edu	37	chr13	31495228	31495228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	agcaagggatggacatggtcAtctcctcagtgattggagaa	13	7	3	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	13	31495228	31495228	A	G	SNP	C13orf33	ENST00000380482	human	ensembl	69_37n	1	known	missense	c.466	p.I156V	1.000	NULL	NULL	-	no_errors	C13orf33	HGNC	ENSG00000102802	155	0	0	26	31	54.39	-	-	-	G	31495228	A	G	31495228	3	3	176	1	0	0	0	0	1	0	0	0	1739	217	8	5	476	5	C13orf33	13	31495228	Missense_Mutation	SNP	A	TCGA-A8-A07P-01A-11W-A019-09	262668	31495228	83674650	32	10585										
ATP11A	0	genome.wustl.edu	37	chr13	113439565	113439565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ccagacaacaggatcgtctcGtccaaggtaacttggcttgg	11	11	1	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	13	113439565	113439565	G	A	SNP	ATP11A	ENST00000418678	human	ensembl	69_37n	1	novel	missense	c.80	p.R27H	0.998	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP11A	HGNC	ENSG00000068650	135	0	0	11	11	50	-	-	-	A	113439565	G	A	113439565	3	1	176	1	0	0	0	0	1	0	0	0	1123	1132	40	1	162	1	ATP11A	13	113439565	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09	81944337	113439565	1730313	33	10586										
C14orf159	0	genome.wustl.edu	37	chr14	91639748	91639748	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ggcctgctgctccctcggagGtgagcaggggcaacctgttc	15	13	0	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	14	91639748	91639748	G	A	SNP	C14orf159	ENST00000520328	human	ensembl	69_37n	1	known	splice_site	c.556+1	e4+1	0.000	-	-	-	no_errors	C14orf159	HGNC	ENSG00000133943	46	0	0	13	11	45.83	-	-	-	A	91639748	G	A	91639748	5	1	176	1	0	0	0	0	0	0	1	0	1767	1275	44	4	586	4	C14orf159	14	91639748	Splice_Site	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		91639748	15709792	34	10587										
ATP10A	0	genome.wustl.edu	37	chr15	25925049	25925049	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gcactgcatctcctgggggaCttcctggtcaactgacgtgc	12	13	2	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	15	25925049	25925049	C	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.3939	p.K1313N	0.002	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	199	0	0	47	24	33.8	-	-	-	A	25925049	C	A	25925049	3	1	176	1	0	0	0	0	1	0	0	0	1120	564	20	4	564	4	ATP10A	15	25925049	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		25925049	76606343	35	10588										
PAFAH1B1	0	genome.wustl.edu	37	chr17	2575983	2575983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	gtttcttcagtagccatcatGcccaatggagatcatatagt	8	9	4	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	2575983	2575983	G	T	SNP	PAFAH1B1	ENST00000397195	human	ensembl	69_37n	1	known	missense	c.603	p.M201I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Dynein_regulator,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168	99	0	0	37	7	15.91	-	-	-	T	2575983	G	T	2575983	3	4	176	1	0	0	0	0	1	0	0	0	11457	1319	46	4	625	4	PAFAH1B1	17	2575983	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		2575983	78619227	36	10589										
C17orf102	0	genome.wustl.edu	37	chr17	32905986	32905986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cgccccggacccatcccgcaCgaagctgagccccagagccc	10	21	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	32905986	32905986	C	T	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	missense	c.314	p.R105H	0.000	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	282	0	0	14	13	48.15	-	-	-	T	32905986	C	T	32905986	3	4	176	1	0	0	0	0	1	0	0	0	1862	536	19	1	197	1	C17orf102	17	32905986	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	30330003	32905986	48289224	37	10590										
NR1D1	0	genome.wustl.edu	37	chr17	38251892	38251892	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	agaccatttagggcctcgttAtgacgctgggcagccaaggt	13	10	0	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	38251892	38251892	A	T	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	missense	c.1053	p.H351Q	0.991	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	21	0	0	31	10	24.39	-	-	-	T	38251892	A	T	38251892	3	4	176	1	0	0	0	0	1	0	0	0	10688	446	16	5	807	5	NR1D1	17	38251892	Missense_Mutation	SNP	A	TCGA-A8-A07P-01A-11W-A019-09	5345906	38251892	42943318	38	10591										
L3MBTL4	0	genome.wustl.edu	37	chr18	6080916	6080917	+	Frame_Shift_Ins	INS	-	-	T													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aagtcaatatcttcttttccINStttgattttcaaacactttg							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	18	6080916	6080917	-	T	INS	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1408_1407	p.G469fs	1.000:1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	78	0	0	16	2	11.11	-	-	-	T	6080917	-	T	6080916	7	5	176	1	0	1	1	0	0	0	0	0	8648	690	24	0	483	0	L3MBTL4	18	6080916	Frame_Shift_Ins	INS	-	TCGA-A8-A07P-01A-11W-A019-09		6080916	71996332	39	10592										
SERPINB7	0	genome.wustl.edu	37	chr18	61471507	61471507	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	cctttcagaatctaatggaaTggaccaatccaaggcgaatg	9	9	2	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	18	61471507	61471507	T	A	SNP	SERPINB7	ENST00000336429	human	ensembl	69_37n	1	known	missense	c.781	p.W261R	0.992	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396	218	0	0	68	115	62.84	-	-	-	A	61471507	T	A	61471507	3	1	176	1	0	0	0	0	1	0	0	0	14194	1464	51	5	807	5	SERPINB7	18	61471507	Missense_Mutation	SNP	T	TCGA-A8-A07P-01A-11W-A019-09	55390591	61471507	16605741	40	10593										
ATG4D	0	genome.wustl.edu	37	chr19	10663675	10663675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	agctcgcccagcccacactcCggctccctcgcacagggcgg	11	20	0	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	19	10663675	10663675	C	T	SNP	ATG4D	ENST00000309469	human	ensembl	69_37n	1	known	missense	c.1357	p.R453W	0.130	NULL	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734	116	0	0	26	19	42.22	-	-	-	T	10663675	C	T	10663675	3	4	176	1	0	0	0	0	1	0	0	0	1103	643	23	1	1395	1	ATG4D	19	10663675	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		10663675	48465308	41	10594										
LMTK3	0	genome.wustl.edu	37	chr19	48994447	48994448	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	agaagcgggagaagcacagcINSggggggcctggaggggggag							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	19	48994447	48994448	-	G	INS	LMTK3	ENST00000270238	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4371_4370	p.L1458fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	22	0	0	4	2	33.33	-	-	-	G	48994448	-	G	48994447	7	5	176	1	0	1	1	0	0	0	0	0	8916	755	27	0	106	0	LMTK3	19	48994447	Frame_Shift_Ins	INS	-	TCGA-A8-A07P-01A-11W-A019-09	38330772	48994447	10134536	42	10595										
SIGLEC9	0	genome.wustl.edu	37	chr19	51629052	51629052	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	catcccacagccccaggaccAtggcaccagcctcacctgtc	7	20	1	0			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	19	51629052	51629052	A	G	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	missense	c.620	p.H207R	0.668	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	162	0	0	38	21	35.59	-	-	-	G	51629052	A	G	51629052	3	3	176	1	0	0	0	0	1	0	0	0	14404	217	8	5	626	5	SIGLEC9	19	51629052	Missense_Mutation	SNP	A	TCGA-A8-A07P-01A-11W-A019-09	2634605	51629052	7499931	43	10596										
NRIP1	0	genome.wustl.edu	37	chr21	16338239	16338239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aatttgtaagtcatcacaagGctcagattttattttcacca	5	8	4	1			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	21	16338239	16338239	G	A	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.2275	p.P759S	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	421	0	0	124	60	32.61	-	-	-	A	16338239	G	A	16338239	3	1	176	1	0	0	0	0	1	0	0	0	10725	1203	42	4	1205	4	NRIP1	21	16338239	Missense_Mutation	SNP	G	TCGA-A8-A07P-01A-11W-A019-09		16338239	31791656	44	10597										
CCDC157	0	genome.wustl.edu	37	chr22	30765506	30765507	+	Frame_Shift_Ins	INS	-	-	CT													0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ccctgcacaggctgcggggcINScctgcatgtccgtggggctc							TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	22	30765506	30765507	-	CT	INS	CCDC157	ENST00000338306	human	ensembl	69_37n	1	known	frame_shift_ins	c.334_335	p.C113fs	1.000:1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860	38	0	0	25	28	52.83	-	-	-	CT	30765507	-	CT	30765506	7	5	176	1	0	1	1	0	0	0	0	0	2815	739	26	0	340	0	CCDC157	22	30765506	Frame_Shift_Ins	INS	-	TCGA-A8-A07P-01A-11W-A019-09		30765506	20539060	45	10598										
PPEF1	0	genome.wustl.edu	37	chrX	18768068	18768068	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	ttgaggccttcaaggaacaaCaggtaagtggaagcagatgc	13	7	1	2			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	X	18768068	18768068	C	T	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	nonsense	c.394	p.Q132*	0.747	pfam_PPP_dom,pirsf_Ser/Thr-Pase_EF-hand_contain	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	494	0	0	147	95	39.26	-	-	-	T	18768068	C	T	18768068	4	4	176	1	0	0	0	0	0	1	0	0	12380	479	17	4	408	4	PPEF1	23	18768068	Nonsense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09		18768068	136502492	46	10599										
ODZ1	0	genome.wustl.edu	37	chrX	123680767	123680767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	1	0.606521739130435	0	0.63289224952741	0.444444444444444	1	0	aggaatgacatgagtactgtCcttgccaatgaggaatttga	11	6	0	4			TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	X	123680767	123680767	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.2608	p.D870N	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	468	0	0	157	25	13.74	-	-	-	T	123680767	C	T	123680767	3	4	176	1	0	0	0	0	1	0	0	0	10907	855	30	2	5662	2	ODZ1	23	123680767	Missense_Mutation	SNP	C	TCGA-A8-A07P-01A-11W-A019-09	104912699	123680767	31589793	47	10600										
C1orf174	0	genome.wustl.edu	37	chr1	3807144	3807144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgctcttacctgcatgagctCaacgtttccaaagaaccggc	8	14	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	3807144	3807144	C	G	SNP	C1orf174	ENST00000361605	human	ensembl	69_37n	-1	known	missense	c.607	p.E203Q	0.997	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912	139	0	0	60	28	31.82	-	-	-	G	3807144	C	G	3807144	3	3	177	1	0	0	0	0	1	0	0	0	2034	835	29	2	132	2	C1orf174	1	3807144	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		3807144	245443477	1	10601										
MAD2L2	0	genome.wustl.edu	37	chr1	11740518	11740519	+	In_Frame_Ins	INS	-	-	ATT													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccaggaactcgcagagcacaINStcggccaccactgcaggggg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	11740518	11740519	-	ATT	INS	MAD2L2	ENST00000376669	human	ensembl	69_37n	-1	known	in_frame_ins	c.51_50	p.D17in_frame_insEI	0.940:1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L2	HGNC	ENSG00000116670	56	0	0	24	10	29.41	-	-	-	ATT	11740519	-	ATT	11740518	7	5	177	1	0	1	1	0	0	0	0	0	9217	214	8	0	612	0	MAD2L2	1	11740518	In_Frame_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	7933374	11740518	237510103	2	10602	90	2								
MAD2L2	0	genome.wustl.edu	37	chr1	11740524	11740525	+	Frame_Shift_Del	DEL	CA	CA	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aactcgcagagcacatcggcCaccactgcaggggggcacaa							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	11740524	11740525	CA	-	DEL	MAD2L2	ENST00000376669	human	ensembl	69_37n	-1	known	frame_shift_del	c.45_44	p.V15fs	1.000:1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L2	HGNC	ENSG00000116670	52	0	0	21	8	26.67	-	-	-	-	11740525	CA	-	11740524	7	5	177	1	0	1	0	1	0	0	0	0	9217	581	21	0	618	0	MAD2L2	1	11740524	Frame_Shift_Del	DEL	CA	TCGA-A8-A07R-01A-21W-A050-09	6	11740524	237510097	3	10603	90	2								
KIAA2013	0	genome.wustl.edu	37	chr1	11982630	11982630	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctcgccaggctagccccttCcgagacacagggctgagagc	12	16	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	11982630	11982630	C	T	SNP	KIAA2013	ENST00000376576	human	ensembl	69_37n	-1	known	silent	c.1950	p.R650	0.006	NULL	pfam_DUF2152	-	no_errors	KIAA2013	HGNC	ENSG00000116685	72	0	0	11	37	77.08	-	-	-	T	11982630	C	T	11982630	2	4	177	1	0	0	0	0	0	0	0	1	8319	870	30	2		2	KIAA2013	1	11982630	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	242106	11982630	237267991	4	10604										
SPEN	0	genome.wustl.edu	37	chr1	16247478	16247478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atcggtgggaataaaattaaGgtgtgcagaatgactttaaa	11	3	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	16247478	16247478	G	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.1749	p.K583N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	280	0	0	137	73	34.76	-	-	-	T	16247478	G	T	16247478	3	4	177	1	0	0	0	0	1	0	0	0	15129	1014	35	4	1783	4	SPEN	1	16247478	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	4264848	16247478	233003143	5	10605										
C1orf64	0	genome.wustl.edu	37	chr1	16330801	16330801	+	Missense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggcgccgaagtagccgcatGgccccgtcagaagaccccag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	16330801	16330801	G	C	SNP	C1orf64	ENST00000329454	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.013	NULL	NULL	-	no_errors	C1orf64	HGNC	ENSG00000183888	33	0	0	12	50	79.37	-	-	-	C	16330801	G	C	16330801	3	2	177	1	0	0	0	0	1	0	0	0	2074	1348	47	4	5	4	C1orf64	1	16330801	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	83323	16330801	232919820	6	10606	91	2								
C1orf64	0	genome.wustl.edu	37	chr1	16330804	16330804	+	Silent	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgccgaagtagccgcatggcCccgtcagaagaccccaggga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	16330804	16330804	C	A	SNP	C1orf64	ENST00000329454	human	ensembl	69_37n	1	known	silent	c.6	p.A2	0.000	NULL	NULL	-	no_errors	C1orf64	HGNC	ENSG00000183888	38	0	0	13	57	81.43	-	-	-	A	16330804	C	A	16330804	2	1	177	1	0	0	0	0	0	0	0	1	2074	610	22	4		4	C1orf64	1	16330804	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3	16330804	232919817	7	10607	91	2								
MUL1	0	genome.wustl.edu	37	chr1	20827667	20827667	+	Missense_Mutation	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caacccctgtgagggtggccCccaccttcagcatctcctcg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	20827667	20827667	C	A	SNP	MUL1	ENST00000264198	human	ensembl	69_37n	-1	known	missense	c.575	p.G192V	1.000	pfam_GIDE	pfam_GIDE,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432	67	0	0	24	19	44.19	-	-	-	A	20827667	C	A	20827667	3	1	177	1	0	0	0	0	1	0	0	0	10056	623	22	4	487	4	MUL1	1	20827667	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4496863	20827667	228422954	8	10608	92	3								
MUL1	0	genome.wustl.edu	37	chr1	20827672	20827672	+	Missense_Mutation	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctgtgagggtggcccccacCttcagcatctcctcggtctc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	20827672	20827672	C	A	SNP	MUL1	ENST00000264198	human	ensembl	69_37n	-1	known	missense	c.570	p.K190N	1.000	pfam_GIDE	pfam_GIDE,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432	69	0	0	26	23	46.94	-	-	-	A	20827672	C	A	20827672	3	1	177	1	0	0	0	0	1	0	0	0	10056	680	24	4	492	4	MUL1	1	20827672	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	5	20827672	228422949	9	10609	92	3								
MUL1	0	genome.wustl.edu	37	chr1	20827674	20827674	+	Missense_Mutation	SNP	T	T	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgtgagggtggcccccacctTcagcatctcctcggtctctt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	20827674	20827674	T	C	SNP	MUL1	ENST00000264198	human	ensembl	69_37n	-1	known	missense	c.568	p.K190E	1.000	pfam_GIDE	pfam_GIDE,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432	70	0	0	27	24	47.06	-	-	-	C	20827674	T	C	20827674	3	2	177	1	0	0	0	0	1	0	0	0	10056	1792	62	5	494	5	MUL1	1	20827674	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2	20827674	228422947	10	10610	92	3								
HSPG2	0	genome.wustl.edu	37	chr1	22155911	22155911	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agcggaactccaggtggccgCccaccatcgccagggacacg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	22155911	22155911	C	-	DEL	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	frame_shift_del	c.11957	p.G3986fs	0.800	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	36	0	0	3	2	40	-	-	-	-	22155911	C	-	22155911	7	5	177	1	0	1	0	1	0	0	0	0	7484	739	26	0	1262	0	HSPG2	1	22155911	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	1328237	22155911	227094710	11	10611										
TCEA3	0	genome.wustl.edu	37	chr1	23713860	23713860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccatctggtgctcacggatgGcctcctgggtcatggcattc	12	13	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	23713860	23713860	G	A	SNP	TCEA3	ENST00000450454	human	ensembl	69_37n	-1	known	missense	c.872	p.A291V	1.000	pfam_TFIIS_cen_dom,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA3	HGNC	ENSG00000204219	173	0	0	126	17	11.81	-	-	-	A	23713860	G	A	23713860	3	1	177	1	0	0	0	0	1	0	0	0	15764	1203	42	4	186	4	TCEA3	1	23713860	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1557949	23713860	225536761	12	10612										
RHD	0	genome.wustl.edu	37	chr1	25599163	25599163	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgcttccttagaggatcaaaAggggctcgtggcatcctatc	11	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	25599163	25599163	A	T	SNP	RHD	ENST00000328664	human	ensembl	69_37n	1	known	missense	c.125	p.K42M	0.001	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010	186	0	0	78	20	20.41	-	-	-	T	25599163	A	T	25599163	3	4	177	1	0	0	0	0	1	0	0	0	13411	72	3	5	127	5	RHD	1	25599163	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	1885303	25599163	223651458	13	10613										
RHCE	0	genome.wustl.edu	37	chr1	25747153	25747153	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gataggatgccacgagccccTtttgatcctctaaggaagcg	11	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	25747153	25747153	T	A	SNP	RHCE	ENST00000294413	human	ensembl	69_37n	-1	known	missense	c.125	p.K42M	0.000	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHCE	HGNC	ENSG00000188672	285	0	0	147	89	37.55	-	-	-	A	25747153	T	A	25747153	3	1	177	1	0	0	0	0	1	0	0	0	13409	1609	56	5	1168	5	RHCE	1	25747153	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	147990	25747153	223503468	14	10614										
ARID1A	0	genome.wustl.edu	37	chr1	27089688	27089688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgccacctcaggttgggtcaGggatgtgtcccccaccaggg	14	13	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	27089688	27089688	G	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.2644	p.G882W	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	62	0	0	30	15	33.33	-	-	-	T	27089688	G	T	27089688	3	4	177	1	0	0	0	0	1	0	0	0	915	1000	35	4	2674	4	ARID1A	1	27089688	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1342535	27089688	222160933	15	10615										
BAI2	0	genome.wustl.edu	37	chr1	32201168	32201169	+	RNA	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaaaggccaagtctcagaggINSccccccccttacccggccct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	32201168	32201169	-	C	INS	BAI2	ENST00000465256	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.516:0.865	-	-	-	no_errors	BAI2	HGNC	ENSG00000121753	147	0	0	60	7	10.45	-	-	-	C	32201169	-	C	32201168	6	5	177	0	1	1	1	0	0	0	0	0	1303	1218	42	0		0	BAI2	1	32201168	RNA	INS	-	TCGA-A8-A07R-01A-21W-A050-09	5111480	32201168	217049453	16	10616										
AK2	0	genome.wustl.edu	37	chr1	33490155	33490155	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggcagacacagaagttttcaGccaatctgggtgcctacaga	11	10	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	33490155	33490155	G	C	SNP	AK2	ENST00000354858	human	ensembl	69_37n	-1	known	missense	c.107	p.A36G	1.000	pfam_Adenylate_kin,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK2	HGNC	ENSG00000004455	102	0	0	28	95	77.24	-	-	-	C	33490155	G	C	33490155	3	2	177	1	0	0	0	0	1	0	0	0	440	971	34	4	641	4	AK2	1	33490155	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1288987	33490155	215760466	17	10617										
KIAA0754	0	genome.wustl.edu	37	chr1	39878587	39878587	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctttccacatgaggacatcCtagttgcttcaatagtctcc	6	13	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	39878587	39878587	C	G	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.2242	p.L748V	0.002	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	112	0	0	80	67	45.58	-	-	-	G	39878587	C	G	39878587	3	3	177	1	0	0	0	0	1	0	0	0	8244	680	24	4	2652	4	KIAA0754	1	39878587	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	6388432	39878587	209372034	18	10618										
PODN	0	genome.wustl.edu	37	chr1	53542877	53542877	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccaggtctgtgtacctgcaCaacaacaagctggcagacgc	10	14	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	53542877	53542877	C	G	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	missense	c.741	p.H247Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	29	0	0	13	14	51.85	-	-	-	G	53542877	C	G	53542877	3	3	177	1	0	0	0	0	1	0	0	0	12252	477	17	4	763	4	PODN	1	53542877	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	13664290	53542877	195707744	19	10619										
DAB1	0	genome.wustl.edu	37	chr1	57480646	57480646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtcgtctgtatcctgtgccaCcccgactttgttgaagtaac	9	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	57480646	57480646	C	A	SNP	DAB1	ENST00000371231	human	ensembl	69_37n	-1	known	missense	c.1453	p.V485L	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB1	HGNC	ENSG00000173406	227	1	0.44	68	58	46.03	-	-	-	A	57480646	C	A	57480646	3	1	177	1	0	0	0	0	1	0	0	0	4249	507	18	4	325	4	DAB1	1	57480646	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3937769	57480646	191769975	20	10620										
MCOLN2	0	genome.wustl.edu	37	chr1	85405236	85405236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttaaatgggcttccctcacCtttgctttgatttccatttt	5	10	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	85405236	85405236	C	T	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	silent	c.1110	p.K370	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	100	0	0	48	157	76.59	-	-	-	T	85405236	C	T	85405236	2	4	177	1	0	0	0	0	0	0	0	1	9467	695	24	4		4	MCOLN2	1	85405236	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	27924590	85405236	163845385	21	10621										
CELSR2	0	genome.wustl.edu	37	chr1	109795431	109795431	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctatggaagtgacagtcacTgtgttggatgtgaatgacaa	12	6	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	109795431	109795431	T	A	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.2730	p.T910	0.904	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	103	0	0	16	19	52.78	-	-	-	A	109795431	T	A	109795431	2	1	177	1	0	0	0	0	0	0	0	1	3251	1567	55	5		5	CELSR2	1	109795431	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	24390195	109795431	139455190	22	10622										
CELSR2	0	genome.wustl.edu	37	chr1	109795768	109795768	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcaatgacaacccaccagtgCtgggcaactttgagatcctt	9	12	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	109795768	109795768	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.3067	p.L1023	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	63	0	0	11	143	92.86	-	-	-	T	109795768	C	T	109795768	2	4	177	1	0	0	0	0	0	0	0	1	3251	796	28	4		4	CELSR2	1	109795768	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	337	109795768	139454853	23	10623										
OVGP1	0	genome.wustl.edu	37	chr1	111963924	111963924	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ataagccaagaagccttcttGcttggtgtacttccctggag	10	10	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	111963924	111963924	G	C	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.877	p.Q293E	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	191	0	0	45	141	75.81	-	-	-	C	111963924	G	C	111963924	3	2	177	1	0	0	0	0	1	0	0	0	11398	1328	46	4	1175	4	OVGP1	1	111963924	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2168156	111963924	137286697	24	10624										
SLC22A15	0	genome.wustl.edu	37	chr1	116574176	116574176	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgttaccgggtcctgttaggAcacactttgatcctgatgtt	10	10	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	116574176	116574176	A	T	SNP	SLC22A15	ENST00000369503	human	ensembl	69_37n	1	known	silent	c.918	p.G306	0.957	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393	185	0	0	120	74	37.95	-	-	-	T	116574176	A	T	116574176	2	4	177	1	0	0	0	0	0	0	0	1	14535	262	10	5		5	SLC22A15	1	116574176	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	4610252	116574176	132676445	25	10625										
POLR3GL	0	genome.wustl.edu	37	chr1	145457935	145457935	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaaagggcccatcacctacCagggttccaatcgatggcat	10	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	145457935	145457935	C	G	SNP	POLR3GL	ENST00000369314	human	ensembl	69_37n	-1	known	missense	c.325	p.D109H	1.000	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851	152	0	0	279	156	35.86	-	-	-	G	145457935	C	G	145457935	3	3	177	1	0	0	0	0	1	0	0	0	12309	608	21	4	351	4	POLR3GL	1	145457935	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	28883759	145457935	103792686	26	10626										
RPRD2	0	genome.wustl.edu	37	chr1	150443698	150443698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgctttctaagatcattagCcctggttcctcaacacccag	6	14	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	150443698	150443698	C	T	SNP	RPRD2	ENST00000369068	human	ensembl	69_37n	1	known	silent	c.2274	p.S758	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	128	0	0	272	64	19.05	-	-	-	T	150443698	C	T	150443698	2	4	177	1	0	0	0	0	0	0	0	1	13703	738	26	4		4	RPRD2	1	150443698	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4985763	150443698	98806923	27	10627										
PRUNE	0	genome.wustl.edu	37	chr1	150999788	150999788	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aaggtggccattagtgcaatAtatatggatttggaggtaag	13	3	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	150999788	150999788	A	C	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	1	known	silent	c.759	p.I253	0.941	pfam_DHHA2	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	440	1	0.23	1259	724	36.51	-	-	-	C	150999788	A	C	150999788	2	2	177	1	0	0	0	0	0	0	0	1	12720	439	16	5		5	PRUNE	1	150999788	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	556090	150999788	98250833	28	10628										
LCE1C	0	genome.wustl.edu	37	chr1	152777833	152777833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctgacactgcagcaggaaGagacaggagggcacttaggg	16	8	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	152777833	152777833	G	A	SNP	LCE1C	ENST00000368768	human	ensembl	69_37n	-1	known	missense	c.122	p.S41F	1.000	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084	219	0	0	347	162	31.76	-	-	-	A	152777833	G	A	152777833	3	1	177	1	0	0	0	0	1	0	0	0	8715	942	33	2	238	2	LCE1C	1	152777833	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1778045	152777833	96472788	29	10629										
ADAR	0	genome.wustl.edu	37	chr1	154574808	154574808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atgctggaaccctctctggaGcccctgacttctgagatgca	10	13	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	154574808	154574808	G	A	SNP	ADAR	ENST00000292205	human	ensembl	69_37n	-1	known	missense	c.439	p.L147F	0.000	NULL	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	164	0	0	269	52	16	-	-	-	A	154574808	G	A	154574808	3	1	177	1	0	0	0	0	1	0	0	0	281	971	34	4	3426	4	ADAR	1	154574808	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1796975	154574808	94675813	30	10630										
C1orf61	0	genome.wustl.edu	37	chr1	156377691	156377691	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagaggtcctgagtggcaggAcgcagaggcaccgttctgta							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	156377691	156377691	A	-	DEL	C1orf61	ENST00000368243	human	ensembl	69_37n	-1	known	frame_shift_del	c.248	p.V83fs	0.005	NULL	NULL	-	no_errors	C1orf61	HGNC	ENSG00000125462	198	0	0	189	26	10.88	-	-	-	-	156377691	A	-	156377691	7	5	177	1	0	1	0	1	0	0	0	0	2072	275	10	0	234	0	C1orf61	1	156377691	Frame_Shift_Del	DEL	A	TCGA-A8-A07R-01A-21W-A050-09	1802883	156377691	92872930	31	10631										
TTC24	0	genome.wustl.edu	37	chr1	156556333	156556333	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggagtcgggcatctgcacTattgtgtgacctccccctgc	11	13	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	156556333	156556333	T	G	SNP	TTC24	ENST00000340086	human	ensembl	69_37n	1	known	missense	c.1058	p.L353R	0.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTC24	HGNC	ENSG00000187862	119	0	0	123	66	34.92	-	-	-	G	156556333	T	G	156556333	3	3	177	1	0	0	0	0	1	0	0	0	16789	1509	53	5	1778	5	TTC24	1	156556333	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	178642	156556333	92694288	32	10632										
NTRK1	0	genome.wustl.edu	37	chr1	156843468	156843468	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acggcggtggagatgcaccaCtggtgcatccccttctctgt	12	13	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	156843468	156843468	C	G	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.894	p.H298Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	17	0	0	49	36	42.35	-	-	-	G	156843468	C	G	156843468	3	3	177	1	0	0	0	0	1	0	0	0	10779	564	20	4	1054	4	NTRK1	1	156843468	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	287135	156843468	92407153	33	10633										
SLAMF9	0	genome.wustl.edu	37	chr1	159923329	159923329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacttttgtgagaggaccagAtgatgttctcaacctcttca	9	9	3	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	159923329	159923329	A	G	SNP	SLAMF9	ENST00000368093	human	ensembl	69_37n	-1	known	missense	c.161	p.I54T	0.397	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF9	HGNC	ENSG00000162723	304	0	0	597	105	14.87	-	-	-	G	159923329	A	G	159923329	3	3	177	1	0	0	0	0	1	0	0	0	14460	333	12	5	720	5	SLAMF9	1	159923329	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3079861	159923329	89327292	34	10634										
NHLH1	0	genome.wustl.edu	37	chr1	160340790	160340790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agaacgcatccgcgtggaagCcttcaacctggccttcgccg	11	15	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	160340790	160340790	C	T	SNP	NHLH1	ENST00000302101	human	ensembl	69_37n	1	known	missense	c.269	p.A90V	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	NHLH1	HGNC	ENSG00000171786	60	0	0	97	31	24.22	-	-	-	T	160340790	C	T	160340790	3	4	177	1	0	0	0	0	1	0	0	0	10475	739	26	4	271	4	NHLH1	1	160340790	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	417461	160340790	88909831	35	10635										
USP21	0	genome.wustl.edu	37	chr1	161131732	161131732	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagtttggggatgaaacatgCatgggatgggggaggcagtg	20	3	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	161131732	161131732	C	T	SNP	USP21	ENST00000487163	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	USP21	HGNC	ENSG00000143258	98	0	0	155	41	20.92	-	-	-	T	161131732	C	T	161131732	1	4	177	0	1	0	0	0	0	0	0	0	17150	725	25	4		4	USP21	1	161131732	RNA	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	790942	161131732	88118889	36	10636										
FAM5B	0	genome.wustl.edu	37	chr1	177245552	177245552	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	actcctgggccactcacaacCggcagtttgaagagtcaggt	11	12	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	177245552	177245552	C	A	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	silent	c.994	p.R332	0.938	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	67	0	0	44	15	25.42	-	-	-	A	177245552	C	A	177245552	2	1	177	1	0	0	0	0	0	0	0	1	5638	643	23	3		3	FAM5B	1	177245552	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	16113820	177245552	72005069	37	10637										
RGS2	0	genome.wustl.edu	37	chr1	192778171	192778171	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgcgacgcacgcccagccgcAaacagccggggctccagcgg	14	17	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	192778171	192778171	A	G	SNP	RGS2	ENST00000483295	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RGS2	HGNC	ENSG00000116741	63	0	0	66	263	79.7	-	-	-	G	192778171	A	G	192778171	1	3	177	0	1	0	0	0	0	0	0	0	13386	145	5	5		5	RGS2	1	192778171	RNA	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	15532619	192778171	56472450	38	10638										
CHI3L1	0	genome.wustl.edu	37	chr1	203149664	203149664	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	attcccggtcctgagattggGgctccaacaccagtctcaga	10	13	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	203149664	203149664	G	A	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	silent	c.828	p.A276	0.988	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	73	0	0	46	13	22.03	-	-	-	A	203149664	G	A	203149664	2	1	177	1	0	0	0	0	0	0	0	1	3369	1219	43	4		4	CHI3L1	1	203149664	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	10371493	203149664	46100957	39	10639										
C4BPB	0	genome.wustl.edu	37	chr1	207265113	207265113	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcaagggcagcaatcggagCcagtgtctagaggaccacac	12	12	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	207265113	207265113	C	G	SNP	C4BPB	ENST00000243611	human	ensembl	69_37n	1	known	missense	c.357	p.S119R	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPB	HGNC	ENSG00000123843	130	0	0	187	56	23.05	-	-	-	G	207265113	C	G	207265113	3	3	177	1	0	0	0	0	1	0	0	0	2271	738	26	4	367	4	C4BPB	1	207265113	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4115449	207265113	41985508	40	10640										
USH2A	0	genome.wustl.edu	37	chr1	216138717	216138717	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgtgttaagagtccattaggGcgaaaaggtgcttcccacct	11	9	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	216138717	216138717	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.7062	p.R2354	0.132	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	225	0	0	162	44	21.36	-	-	-	C	216138717	G	C	216138717	2	2	177	1	0	0	0	0	0	0	0	1	17133	1190	42	4		4	USH2A	1	216138717	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	8873604	216138717	33111904	41	10641										
WDR26	0	genome.wustl.edu	37	chr1	224612368	224612368	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cttcatcctctgacatgacaGaaagcagcagtcaggggaaa	10	10	3	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	224612368	224612368	G	A	SNP	WDR26	ENST00000366852	human	ensembl	69_37n	-1	known	silent	c.633	p.F211	1.000	NULL	pfscan_LisH_dimerisation	-	no_errors	WDR26	HGNC	ENSG00000162923	110	0	0	247	103	29.43	-	-	-	A	224612368	G	A	224612368	2	1	177	1	0	0	0	0	0	0	0	1	17380	957	33	2		2	WDR26	1	224612368	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	8473651	224612368	24638253	42	10642										
LBR	0	genome.wustl.edu	37	chr1	225599115	225599115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcgagggtttaattcacggCcaatgaagaaatcatagaca	9	7	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	225599115	225599115	C	T	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.1112	p.G371D	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	255	0	0	701	102	12.67	-	-	-	T	225599115	C	T	225599115	3	4	177	1	0	0	0	0	1	0	0	0	8706	739	26	4	759	4	LBR	1	225599115	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	986747	225599115	23651506	43	10643										
LYST	0	genome.wustl.edu	37	chr1	235875443	235875443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tagattcaaaagatgagagtCgccaagttgtatttgtagaa	10	4	1	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	235875443	235875443	C	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.9839	p.R3280P	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	64	0	0	50	6	10.71	-	-	-	G	235875443	C	G	235875443	3	3	177	1	0	0	0	0	1	0	0	0	9195	884	31	3	1610	3	LYST	1	235875443	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	10276328	235875443	13375178	44	10644										
OR2T12	0	genome.wustl.edu	37	chr1	248458059	248458059	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggggtgaacatagtatagaaGgctgacacaaccttatcgtg	12	7	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	1	248458059	248458059	G	A	SNP	OR2T12	ENST00000317996	human	ensembl	69_37n	-1	known	silent	c.822	p.A274	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201	362	0	0	361	70	16.24	-	-	-	A	248458059	G	A	248458059	2	1	177	1	0	0	0	0	0	0	0	1	11092	987	35	4		4	OR2T12	1	248458059	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	12582616	248458059	792562	45	10645										
PXDN	0	genome.wustl.edu	37	chr2	1639257	1639257	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcgcccccggcatccacgcActctgtggtactgagccgtg	11	16	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	1639257	1639257	A	C	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.4243	p.C1415G	1.000	smart_VWF_C,pfscan_VWF_C	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	114	0	0	26	14	35	-	-	-	C	1639257	A	C	1639257	3	2	177	1	0	0	0	0	1	0	0	0	12930	159	6	5	204	5	PXDN	2	1639257	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09		1639257	241560116	46	10646										
KIDINS220	0	genome.wustl.edu	37	chr2	8871974	8871975	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtagacccggggcccccttcINStaactgggacatctgagcaa							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	8871974	8871975	-	A	INS	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4192_4191	p.E1397fs	1.000:1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	170	0	0	84	21	20	-	-	-	A	8871975	-	A	8871974	7	5	177	1	0	1	1	0	0	0	0	0	8323	922	32	0	1127	0	KIDINS220	2	8871974	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	7232717	8871974	234327399	47	10647	93	2								
KIDINS220	0	genome.wustl.edu	37	chr2	8871980	8871980	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccggggcccccttctaactGggacatctgagcaatgtatt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	8871980	8871980	G	-	DEL	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	frame_shift_del	c.4186	p.Q1396fs	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	171	0	0	69	21	23.08	-	-	-	-	8871980	G	-	8871980	7	5	177	1	0	1	0	1	0	0	0	0	8323	1357	47	0	1133	0	KIDINS220	2	8871980	Frame_Shift_Del	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	6	8871980	234327393	48	10648	93	2								
TRIM54	0	genome.wustl.edu	37	chr2	27527883	27527883	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggcaatgaccgcgtgcaagcAgtgatcacacagatggagga	14	9	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	27527883	27527883	A	C	SNP	TRIM54	ENST00000296098	human	ensembl	69_37n	1	known	silent	c.696	p.A232	0.996	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100	134	1	0.74	54	26	32.5	-	-	-	C	27527883	A	C	27527883	2	2	177	1	0	0	0	0	0	0	0	1	16624	175	7	5		5	TRIM54	2	27527883	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	18655903	27527883	215671490	49	10649										
FAM179A	0	genome.wustl.edu	37	chr2	29259480	29259480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgggcgctggagtccttcgCcaagatgatccccctcctca	11	15	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	29259480	29259480	C	T	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.2492	p.A831V	0.011	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	235	0	0	134	79	37.09	-	-	-	T	29259480	C	T	29259480	3	4	177	1	0	0	0	0	1	0	0	0	5545	739	26	4	2558	4	FAM179A	2	29259480	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1731597	29259480	213939893	50	10650										
BIRC6	0	genome.wustl.edu	37	chr2	32640653	32640653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgcaataaatcaagtagaggCcttgaataatttaaataaat	6	4	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	32640653	32640653	C	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.2294	p.A765D	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	66	0	0	71	28	28	-	-	-	A	32640653	C	A	32640653	3	1	177	1	0	0	0	0	1	0	0	0	1443	739	26	4	2332	4	BIRC6	2	32640653	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3381173	32640653	210558720	51	10651										
LTBP1	0	genome.wustl.edu	37	chr2	33518252	33518252	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacgagtgcctggaaccaaaCgtctgcgcaaatggtgattg	13	9	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	33518252	33518252	C	G	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.3141	p.N1047K	0.001	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	171	0	0	92	54	36.99	-	-	-	G	33518252	C	G	33518252	3	3	177	1	0	0	0	0	1	0	0	0	9139	535	19	3	3271	3	LTBP1	2	33518252	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	877599	33518252	209681121	52	10652										
PLEKHH2	0	genome.wustl.edu	37	chr2	43992708	43992708	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agcctcttctgtcaagcagcAgaccgaccaaaggccccacc	8	17	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	43992708	43992708	A	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	nonsense	c.4453	p.R1485*	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	100	0	0	36	9	19.15	-	-	-	T	43992708	A	T	43992708	4	4	177	1	0	0	0	0	0	1	0	0	12151	180	7	5	4567	5	PLEKHH2	2	43992708	Nonsense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	10474456	43992708	199206665	53	10653										
CCDC88A	0	genome.wustl.edu	37	chr2	55522655	55522655	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggcatgtctatagctaaatCattttgggcacaagaaccta	8	8	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	55522655	55522655	C	T	SNP	CCDC88A	ENST00000426576	human	ensembl	69_37n	-1	putative	missense	c.3154	p.D1052N	0.000	NULL	NULL	-	no_start_codon	CCDC88A	HGNC	ENSG00000115355	66	0	0	36	11	23.4	-	-	-	T	55522655	C	T	55522655	3	4	177	1	0	0	0	0	1	0	0	0	2890	841	29	2		2	CCDC88A	2	55522655	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11529947	55522655	187676718	54	10654										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73303234	73303235	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccactgctcagggctatgctINScagactggagcgggactgct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	73303234	73303235	-	A	INS	RAB11FIP5	ENST00000258098	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1645_1644	p.S548fs	1.000:1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	68	0	0	119	18	13.14	-	-	-	A	73303235	-	A	73303234	7	5	177	1	0	1	1	0	0	0	0	0	12980	1551	54	0	324	0	RAB11FIP5	2	73303234	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	17780579	73303234	169896139	55	10655										
MGAT4A	0	genome.wustl.edu	37	chr2	99343017	99343017	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcttcacacgctgatgcctcGgccttttcccttcctattca	5	16	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	99343017	99343017	G	C	SNP	MGAT4A	ENST00000460768	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MGAT4A	HGNC	ENSG00000071073	16	0	0	9	4	30.77	-	-	-	C	99343017	G	C	99343017	1	2	177	0	1	0	0	0	0	0	0	0	9616	1131	39	3		3	MGAT4A	2	99343017	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	26039783	99343017	143856356	56	10656										
GALNT5	0	genome.wustl.edu	37	chr2	158114775	158114775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggataggattcagagttcagCcagaccaaggaaaaattttt	10	6	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	158114775	158114775	C	T	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.181	p.P61S	0.997	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	214	0	0	75	177	70.24	-	-	-	T	158114775	C	T	158114775	3	4	177	1	0	0	0	0	1	0	0	0	6266	739	26	4	183	4	GALNT5	2	158114775	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	58771758	158114775	85084598	57	10657										
METTL8	0	genome.wustl.edu	37	chr2	172195922	172195922	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acatgatcccatgatgattcTctcgccttctcttcaggttt	6	12	3	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	172195922	172195922	T	A	SNP	METTL8	ENST00000392604	human	ensembl	69_37n	-1	known	missense	c.378	p.R126S	0.027	NULL	pfam_Methyltransf_11	-	no_errors	METTL8	HGNC	ENSG00000123600	258	0	0	70	449	85.52	-	-	-	A	172195922	T	A	172195922	3	1	177	1	0	0	0	0	1	0	0	0	9578	1548	54	5	873	5	METTL8	2	172195922	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	14081147	172195922	71003451	58	10658										
TTN	0	genome.wustl.edu	37	chr2	179426732	179426732	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtaataggaactgttatggAtccagcactgtttgaaacac	9	7	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	179426732	179426732	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.76423	p.S25475P	0.555	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	89	0	0	66	15	18.52	-	-	-	G	179426732	A	G	179426732	3	3	177	1	0	0	0	0	1	0	0	0	16832	333	12	5	24000	5	TTN	2	179426732	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	7230810	179426732	63772641	59	10659										
TTN	0	genome.wustl.edu	37	chr2	179426743	179426743	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgttatggatccagcactgTttgaaacacataattcataa	6	8	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	179426743	179426743	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.76412	p.N25471I	1.000	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	82	0	0	59	13	18.06	-	-	-	A	179426743	T	A	179426743	3	1	177	1	0	0	0	0	1	0	0	0	16832	1725	60	5	24011	5	TTN	2	179426743	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	11	179426743	63772630	60	10660										
DNAH7	0	genome.wustl.edu	37	chr2	196737162	196737164	+	In_Frame_Del	DEL	TCA	TCA	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccatttacgatttgtgtggTcaaatctagaaattcatctg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	196737162	196737164	TCA	-	DEL	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	in_frame_del	c.6445_6443	p.LT2148in_frame_delS	1.000:1.000:0.997	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	182	0	0	152	18	10.53	-	-	-	-	196737164	TCA	-	196737162	7	5	177	1	0	1	0	1	0	0	0	0	4641	1667	58	0	5733	0	DNAH7	2	196737162	In_Frame_Del	DEL	TCA	TCGA-A8-A07R-01A-21W-A050-09	17310419	196737162	46462211	61	10661										
ATG9A	0	genome.wustl.edu	37	chr2	220089424	220089424	+	Silent	SNP	A	A	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agaggcaggagggatttgttAaccagtgccaccatgtagtt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	220089424	220089424	A	C	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	silent	c.669	p.V223	0.873	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	174	0	0	93	23	19.83	-	-	-	C	220089424	A	C	220089424	2	2	177	1	0	0	0	0	0	0	0	1	1106	349	13	5		5	ATG9A	2	220089424	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	23352262	220089424	23109949	62	10662	94	2								
ATG9A	0	genome.wustl.edu	37	chr2	220089426	220089426	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggcaggagggatttgttaaCcagtgccaccatgtagttct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	220089426	220089426	C	G	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	missense	c.667	p.V223L	1.000	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	174	0	0	93	22	19.13	-	-	-	G	220089426	C	G	220089426	3	3	177	1	0	0	0	0	1	0	0	0	1106	507	18	4	1888	4	ATG9A	2	220089426	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2	220089426	23109947	63	10663	94	2								
UGT1A8	0	genome.wustl.edu	37	chr2	234526443	234526443	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaggcagggaagctgctggtAgtgcccatggatgggagtca	18	7	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	234526443	234526443	A	C	SNP	UGT1A8	ENST00000373450	human	ensembl	69_37n	1	known	silent	c.90	p.V30	0.573	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366	171	0	0	235	57	19.52	-	-	-	C	234526443	A	C	234526443	2	2	177	1	0	0	0	0	0	0	0	1	17048	407	15	5		5	UGT1A8	2	234526443	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	14437017	234526443	8672930	64	10664										
COL6A3	0	genome.wustl.edu	37	chr2	238253387	238253387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtcattcacaatactcaagAccacatctcgcatccggccg	7	15	4	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	2	238253387	238253387	A	G	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.7274	p.V2425A	0.127	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	130	0	0	75	32	29.09	-	-	-	G	238253387	A	G	238253387	3	3	177	1	0	0	0	0	1	0	0	0	3731	275	10	5	2295	5	COL6A3	2	238253387	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3726944	238253387	4945986	65	10665										
FBLN2	0	genome.wustl.edu	37	chr3	13661229	13661229	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttctgtgtggtttcctccaGacaatggaccctgcaagcag	10	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	13661229	13661229	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	splice_site	c.2054-1	e7-1	1.000	-	-	-	no_errors	FBLN2	HGNC	ENSG00000163520	210	0	0	68	14	17.07	-	-	-	A	13661229	G	A	13661229	5	1	177	1	0	0	0	0	0	0	1	0	5745	956	33	2	769	2	FBLN2	3	13661229	Splice_Site	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		13661229	184361201	66	10666			1	23		3	3	40	G		1.145764e-07
FBLN2	0	genome.wustl.edu	37	chr3	13661249	13661249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacaatggaccctgcaagcaGgtgtgcagcactgttggggg	16	9	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	13661249	13661249	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	silent	c.2073	p.Q691	1.000	smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	222	0	0	81	17	17.35	-	-	-	A	13661249	G	A	13661249	2	1	177	1	0	0	0	0	0	0	0	1	5745	991	35	4		4	FBLN2	3	13661249	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	20	13661249	184361181	67	10667			1	23		3	3	40	G		1.145764e-07
FBLN2	0	genome.wustl.edu	37	chr3	13661268	13661268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggtgtgcagcactgttgggGgctcagccatatgctcctgt	14	10	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	13661268	13661268	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	missense	c.2092	p.G698S	0.002	smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	236	0	0	92	14	13.21	-	-	-	A	13661268	G	A	13661268	3	1	177	1	0	0	0	0	1	0	0	0	5745	1232	43	4	808	4	FBLN2	3	13661268	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	19	13661268	184361162	68	10668			1	23		3	3	40	G		1.145764e-07
OXSM	0	genome.wustl.edu	37	chr3	25832724	25832725	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtcttatcggaggagagagtINSggaattgtttcactggttgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	25832724	25832725	-	G	INS	OXSM	ENST00000280701	human	ensembl	69_37n	1	known	frame_shift_ins	c.213_214	p.I72fs	1.000:1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	243	0	0	202	35	14.77	-	-	-	G	25832725	-	G	25832724	7	5	177	1	0	1	1	0	0	0	0	0	11408	1693	59	0	215	0	OXSM	3	25832724	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	12171456	25832724	172189706	69	10669										
NEK10	0	genome.wustl.edu	37	chr3	27233594	27233594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cataaaatacctttgtgtgcGtcttcgttcccgttctagct	7	11	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	27233594	27233594	G	C	SNP	NEK10	ENST00000383771	human	ensembl	69_37n	-1	known	missense	c.367	p.R123G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	475	1	0.21	495	291	36.98	-	-	-	C	27233594	G	C	27233594	3	2	177	1	0	0	0	0	1	0	0	0	10394	1160	40	3		3	NEK10	3	27233594	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1400870	27233594	170788836	70	10670										
CCR9	0	genome.wustl.edu	37	chr3	45942991	45942991	+	Silent	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcttgctgctataccatcatCattcacaccctgatacaagc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	45942991	45942991	C	T	SNP	CCR9	ENST00000357632	human	ensembl	69_37n	1	known	silent	c.711	p.I237	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt,prints_Chemokine_CCR11,prints_Chemokine_CXCR4,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR9	HGNC	ENSG00000173585	350	0	0	278	238	46.03	-	-	-	T	45942991	C	T	45942991	2	4	177	1	0	0	0	0	0	0	0	1	2977	816	29	2		2	CCR9	3	45942991	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	18709397	45942991	152079439	71	10671	95	2								
CCR9	0	genome.wustl.edu	37	chr3	45942995	45942995	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gctgctataccatcatcattCacaccctgatacaagccaag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	45942995	45942995	C	T	SNP	CCR9	ENST00000357632	human	ensembl	69_37n	1	known	missense	c.715	p.H239Y	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_ATII_rcpt,prints_Chemokine_CXCR4,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt,prints_Chemokine_CCR11,prints_Chemokine_CXCR4,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR9	HGNC	ENSG00000173585	356	3	0.84	282	243	46.29	-	-	-	T	45942995	C	T	45942995	3	4	177	1	0	0	0	0	1	0	0	0	2977	826	29	2	721	2	CCR9	3	45942995	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4	45942995	152079435	72	10672	95	2								
QRICH1	0	genome.wustl.edu	37	chr3	49067887	49067887	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgccatggccaaggcatctcAgtgcatagtgcttgcattgg	12	10	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	49067887	49067887	A	G	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	nonstop	c.2329	p.*777R	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	107	0	0	47	11	18.64	-	-	-	G	49067887	A	G	49067887	4	3	177	1	0	0	0	0	0	0	0	0	12962	201	7	5	5	5	QRICH1	3	49067887	Nonstop_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3124892	49067887	148954543	73	10673										
QARS	0	genome.wustl.edu	37	chr3	49135513	49135513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttttgccagggccacagagCagtccactaatgctgcatcc	10	13	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	49135513	49135513	C	T	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.2189	p.C730Y	0.868	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	168	0	0	116	27	18.75	-	-	-	T	49135513	C	T	49135513	3	4	177	1	0	0	0	0	1	0	0	0	12954	710	25	4	146	4	QARS	3	49135513	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	67626	49135513	148886917	74	10674										
VPRBP	0	genome.wustl.edu	37	chr3	51450832	51450832	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtcatcttcatcatctgcctGcaacatagcttgagggggag	11	10	5	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	51450832	51450832	G	A	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	nonsense	c.2593	p.Q865*	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	181	0	0	163	103	38.72	-	-	-	A	51450832	G	A	51450832	4	1	177	1	0	0	0	0	0	1	0	0	17282	1328	46	4	603	4	VPRBP	3	51450832	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2315319	51450832	146571598	75	10675										
NISCH	0	genome.wustl.edu	37	chr3	52492789	52492789	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggatctggaggtctacctcCagaagctcctggctgccttc	11	13	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	52492789	52492789	C	A	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	missense	c.289	p.Q97K	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	178	0	0	97	19	16.38	-	-	-	A	52492789	C	A	52492789	3	1	177	1	0	0	0	0	1	0	0	0	10504	595	21	4	299	4	NISCH	3	52492789	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1041957	52492789	145529641	76	10676										
CACNA1D	0	genome.wustl.edu	37	chr3	53758015	53758015	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atttccctcaagcacttctcAcagtgttccaggtgagtcct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	53758015	53758015	A	-	DEL	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	frame_shift_del	c.2149	p.T717fs	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	222	0	0	99	19	15.83	-	-	-	-	53758015	A	-	53758015	7	5	177	1	0	1	0	1	0	0	0	0	2566	159	6	0	2315	0	CACNA1D	3	53758015	Frame_Shift_Del	DEL	A	TCGA-A8-A07R-01A-21W-A050-09	1265226	53758015	144264415	77	10677	96	2								
CACNA1D	0	genome.wustl.edu	37	chr3	53758019	53758019	+	Missense_Mutation	SNP	T	T	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccctcaagcacttctcacagTgttccaggtgagtcctccct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	53758019	53758019	T	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2153	p.V718E	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	211	0	0	97	18	15.52	-	-	-	A	53758019	T	A	53758019	3	1	177	1	0	0	0	0	1	0	0	0	2566	1696	59	5	2319	5	CACNA1D	3	53758019	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	4	53758019	144264411	78	10678	96	2								
OR5H15	0	genome.wustl.edu	37	chr3	97887998	97887998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aatcttgtcatatatagctgGtattcttcatgctttaatcc	5	8	4	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	97887998	97887998	G	T	SNP	OR5H15	ENST00000356526	human	ensembl	69_37n	1	known	missense	c.455	p.G152V	0.974	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412	158	0	0	73	75	50.68	-	-	-	T	97887998	G	T	97887998	3	4	177	1	0	0	0	0	1	0	0	0	11234	1261	44	4	457	4	OR5H15	3	97887998	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	44129979	97887998	100134432	79	10679										
ADPRH	0	genome.wustl.edu	37	chr3	119306587	119306587	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acagctgccattgctggctgCtggtggggagttatgtatgg	16	7	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	119306587	119306587	C	A	SNP	ADPRH	ENST00000357003	human	ensembl	69_37n	1	known	nonsense	c.936	p.C312*	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843	161	0	0	62	35	36.08	-	-	-	A	119306587	C	A	119306587	4	1	177	1	0	0	0	0	0	1	0	0	331	805	28	4	946	4	ADPRH	3	119306587	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	21418589	119306587	78715843	80	10680										
HEG1	0	genome.wustl.edu	37	chr3	124731785	124731785	+	Nonsense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggatgggtcagcgagagctGttttccagctgtagtctgta							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	124731785	124731785	G	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	nonsense	c.2638	p.Q880*	0.014	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	360	0	0	210	292	57.82	-	-	-	A	124731785	G	A	124731785	4	1	177	1	0	0	0	0	0	1	0	0	7095	1386	48	4	1555	4	HEG1	3	124731785	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5425198	124731785	73290645	81	10681	97	2								
HEG1	0	genome.wustl.edu	37	chr3	124731786	124731786	+	Silent	SNP	T	T	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggatgggtcagcgagagctgTtttccagctgtagtctgtac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	124731786	124731786	T	C	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	silent	c.2637	p.K879	0.004	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	356	0	0	213	284	57.03	-	-	-	C	124731786	T	C	124731786	2	2	177	1	0	0	0	0	0	0	0	1	7095	1722	60	5		5	HEG1	3	124731786	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1	124731786	73290644	82	10682	97	2								
ESYT3	0	genome.wustl.edu	37	chr3	138153870	138153870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtggtggcgcaggaaccgccGcgggaagcttgggcgcctgg	20	11	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	138153870	138153870	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	missense	c.230	p.R77H	0.995	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	27	0	0	15	11	42.31	-	-	-	A	138153870	G	A	138153870	3	1	177	1	0	0	0	0	1	0	0	0	5303	1087	38	1	232	1	ESYT3	3	138153870	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	13422084	138153870	59868560	83	10683										
HPS3	0	genome.wustl.edu	37	chr3	148871420	148871420	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cattccagagagaagacagtCacccaagaggcttctgtaag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	148871420	148871420	C	-	DEL	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	frame_shift_del	c.1385	p.S462fs	0.949	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	183	0	0	295	42	12.46	-	-	-	-	148871420	C	-	148871420	7	5	177	1	0	1	0	1	0	0	0	0	7391	838	29	0	1411	0	HPS3	3	148871420	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	10717550	148871420	49151010	84	10684										
CCDC39	0	genome.wustl.edu	37	chr3	180369311	180369311	+	Frame_Shift_Del	DEL	T	T	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tatctcattatgatttttagTtttttgtaacctgaagaggg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	180369311	180369311	T	-	DEL	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	frame_shift_del	c.1045	p.T349fs	0.014	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	355	0	0	459	354	42.96	-	-	-	-	180369311	T	-	180369311	7	5	177	1	0	1	0	1	0	0	0	0	2837	1725	60	0	1828	0	CCDC39	3	180369311	Frame_Shift_Del	DEL	T	TCGA-A8-A07R-01A-21W-A050-09	31497891	180369311	17653119	85	10685										
RTP2	0	genome.wustl.edu	37	chr3	187419769	187419769	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcacctgcctgaggcgtgctGctccaggtactgcttccagc	11	15	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	3	187419769	187419769	G	C	SNP	RTP2	ENST00000358241	human	ensembl	69_37n	-1	known	missense	c.148	p.Q50E	1.000	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471	88	0	0	48	60	55.56	-	-	-	C	187419769	G	C	187419769	3	2	177	1	0	0	0	0	1	0	0	0	13820	1328	46	4	537	4	RTP2	3	187419769	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	7050458	187419769	10602661	86	10686										
WHSC1	0	genome.wustl.edu	37	chr4	1936971	1936971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggaaaagactcaggacggaCaagcacagtcttcggaaggt	13	8	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	1936971	1936971	C	G	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	missense	c.1656	p.D552E	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_superfamily,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_PWWP,smart_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_superfamily	-	no_errors	WHSC1	HGNC	ENSG00000109685	286	0	0	97	68	41.21	-	-	-	G	1936971	C	G	1936971	3	3	177	1	0	0	0	0	1	0	0	0	17459	477	17	4	1678	4	WHSC1	4	1936971	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		1936971	189217305	87	10687										
NOP14	0	genome.wustl.edu	37	chr4	2945884	2945885	+	Frame_Shift_Ins	INS	-	-	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ataaacctctgggacaaagcINScacatactccaggaacaggc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	2945884	2945885	-	T	INS	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1807_1806	p.A602fs	1.000:1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	176	0	0	215	30	12.24	-	-	-	T	2945885	-	T	2945884	7	5	177	1	0	1	1	0	0	0	0	0	10608	739	26	0	790	0	NOP14	4	2945884	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	1008913	2945884	188208392	88	10688	98	3								
NOP14	0	genome.wustl.edu	37	chr4	2945886	2945887	+	In_Frame_Ins	INS	-	-	GGC													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aaacctctgggacaaagccaINScatactccaggaacaggcag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	2945886	2945887	-	GGC	INS	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	in_frame_ins	c.1805_1804	p.V602in_frame_insGL	1.000:1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	178	0	0	199	30	13.1	-	-	-	GGC	2945887	-	GGC	2945886	7	5	177	1	0	1	1	0	0	0	0	0	10608	159	6	0	792	0	NOP14	4	2945886	In_Frame_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	2	2945886	188208390	89	10689	98	3								
NOP14	0	genome.wustl.edu	37	chr4	2945891	2945891	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctctgggacaaagccacataCtccaggaacaggcagcacac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	2945891	2945891	C	-	DEL	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	frame_shift_del	c.1800	p.E600fs	0.977	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	179	0	0	194	30	13.39	-	-	-	-	2945891	C	-	2945891	7	5	177	1	0	1	0	1	0	0	0	0	10608	564	20	0	797	0	NOP14	4	2945891	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	5	2945891	188208385	90	10690	98	3								
CPZ	0	genome.wustl.edu	37	chr4	8603072	8603072	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtgagggcggctgggtgcGcagaccctgccggcacatct	17	12	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	8603072	8603072	G	C	SNP	CPZ	ENST00000360986	human	ensembl	69_37n	1	known	missense	c.344	p.R115P	0.009	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,pfscan_Frizzled_dom,prints_Peptidase_M14	-	no_errors	CPZ	HGNC	ENSG00000109625	37	0	0	5	5	45.45	-	-	-	C	8603072	G	C	8603072	3	2	177	1	0	0	0	0	1	0	0	0	3869	1087	38	3	354	3	CPZ	4	8603072	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5657181	8603072	182551204	91	10691										
ANAPC4	0	genome.wustl.edu	37	chr4	25408876	25408876	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acgttgaaagagttggtcagGtatgggctttgaactcattt	12	5	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	25408876	25408876	G	T	SNP	ANAPC4	ENST00000510092	human	ensembl	69_37n	1	known	splice_site	c.1434+1	e19+1	1.000	-	-	-	no_errors	ANAPC4	HGNC	ENSG00000053900	224	0	0	39	121	75.62	-	-	-	T	25408876	G	T	25408876	5	4	177	1	0	0	0	0	0	0	1	0	604	1275	44	4	1506	4	ANAPC4	4	25408876	Splice_Site	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	16805804	25408876	165745400	92	10692										
COX7B2	0	genome.wustl.edu	37	chr4	46737103	46737103	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcacagcattaccatatttaTcatgaaaatctggtgagtgt	8	7	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	46737103	46737103	T	C	SNP	COX7B2	ENST00000302930	human	ensembl	69_37n	-1	known	missense	c.107	p.D36G	1.000	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	-	no_errors	COX7B2	HGNC	ENSG00000170516	173	0	0	336	58	14.72	-	-	-	C	46737103	T	C	46737103	3	2	177	1	0	0	0	0	1	0	0	0	3813	1435	50	5	142	5	COX7B2	4	46737103	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	21328227	46737103	144417173	93	10693										
NPFFR2	0	genome.wustl.edu	37	chr4	73012701	73012701	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtttaattgcaggttccaGtgtgtggtctacccttttaa	10	7	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	73012701	73012701	G	C	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.741	p.Q247H	0.573	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	212	0	0	225	50	18.18	-	-	-	C	73012701	G	C	73012701	3	2	177	1	0	0	0	0	1	0	0	0	10650	1020	36	4	761	4	NPFFR2	4	73012701	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	26275598	73012701	118141575	94	10694										
ADH5	0	genome.wustl.edu	37	chr4	99997652	99997652	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttacagcccatgataactgCcaatccgactcctcccagac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	99997652	99997652	C	G	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	missense	c.616	p.A206P	1.000	pfam_ADH_C,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	253	0	0	75	16	17.58	-	-	-	G	99997652	C	G	99997652	3	3	177	1	0	0	0	0	1	0	0	0	311	739	26	4	524	4	ADH5	4	99997652	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	26984951	99997652	91156624	95	10695	99	2								
ADH5	0	genome.wustl.edu	37	chr4	99997655	99997655	+	Missense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acagcccatgataactgccaAtccgactcctcccagaccaa							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	99997655	99997655	A	T	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	missense	c.613	p.L205M	0.921	pfam_ADH_C,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	257	0	0	73	16	17.98	-	-	-	T	99997655	A	T	99997655	3	4	177	1	0	0	0	0	1	0	0	0	311	98	4	5	527	5	ADH5	4	99997655	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3	99997655	91156621	96	10696	99	2								
NFKB1	0	genome.wustl.edu	37	chr4	103534623	103534623	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagctggtggaggccctgagAcaaatgggctacaccgaagc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	103534623	103534623	A	-	DEL	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	frame_shift_del	c.2634	p.R878fs	0.759	pfam_Death,superfamily_DEATH-like,smart_Death	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	57	0	0	47	29	37.66	-	-	-	-	103534623	A	-	103534623	7	5	177	1	0	1	0	1	0	0	0	0	10447	272	10	0	2720	0	NFKB1	4	103534623	Frame_Shift_Del	DEL	A	TCGA-A8-A07R-01A-21W-A050-09	3536968	103534623	87619653	97	10697										
TIFA	0	genome.wustl.edu	37	chr4	113199484	113199484	+	Missense_Mutation	SNP	A	A	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taaaacttattgactgaaatAttccacactgcaactggcca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	113199484	113199484	A	C	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	missense	c.89	p.I30R	0.157	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	62	0	0	20	12	37.5	-	-	-	C	113199484	A	C	113199484	3	2	177	1	0	0	0	0	1	0	0	0	15989	449	16	5	469	5	TIFA	4	113199484	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	9664861	113199484	77954792	98	10698	100	2								
TIFA	0	genome.wustl.edu	37	chr4	113199487	113199487	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aacttattgactgaaatattCcacactgcaactggccagga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	113199487	113199487	C	G	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	missense	c.86	p.G29A	0.001	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	61	0	0	20	11	35.48	-	-	-	G	113199487	C	G	113199487	3	3	177	1	0	0	0	0	1	0	0	0	15989	855	30	2	472	2	TIFA	4	113199487	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3	113199487	77954789	99	10699	100	2								
FABP2	0	genome.wustl.edu	37	chr4	120243210	120243210	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccattttttccatgaacttGtcatagttttcactccggtc	5	12	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	120243210	120243210	G	C	SNP	FABP2	ENST00000274024	human	ensembl	69_37n	-1	known	missense	c.48	p.D16E	0.985	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP2	HGNC	ENSG00000145384	340	0	0	58	275	82.58	-	-	-	C	120243210	G	C	120243210	3	2	177	1	0	0	0	0	1	0	0	0	5397	1368	48	4	366	4	FABP2	4	120243210	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	7043723	120243210	70911066	100	10700										
BBS12	0	genome.wustl.edu	37	chr4	123664820	123664820	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccaactgtgcttaaattcctGgcaaatggatggcagaaata	9	8	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	123664820	123664820	G	C	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	1	known	silent	c.1773	p.L591	0.999	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	269	0	0	205	65	23.99	-	-	-	C	123664820	G	C	123664820	2	2	177	1	0	0	0	0	0	0	0	1	1341	1335	47	4		4	BBS12	4	123664820	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3421610	123664820	67489456	101	10701										
DCHS2	0	genome.wustl.edu	37	chr4	155242031	155242031	+	Missense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gctcatcctggaaagatgggGaatggtcattctgatcttcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	155242031	155242031	G	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3155	p.S1052C	0.975	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	307	1	0.32	270	72	21.05	-	-	-	C	155242031	G	C	155242031	3	2	177	1	0	0	0	0	1	0	0	0	4319	1174	41	2	5643	2	DCHS2	4	155242031	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	31577211	155242031	35912245	102	10702	101	2								
DCHS2	0	genome.wustl.edu	37	chr4	155242033	155242033	+	Missense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcatcctggaaagatggggaAtggtcattctgatcttccac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	155242033	155242033	A	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3153	p.H1051Q	0.977	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	309	0	0	270	68	20.12	-	-	-	T	155242033	A	T	155242033	3	4	177	1	0	0	0	0	1	0	0	0	4319	98	4	5	5645	5	DCHS2	4	155242033	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	2	155242033	35912243	103	10703	101	2								
CDKN2AIP	0	genome.wustl.edu	37	chr4	184367244	184367244	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtttttcttctttttagaagGggtagaagagccatccaaaa	9	6	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	184367244	184367244	G	T	SNP	CDKN2AIP	ENST00000504169	human	ensembl	69_37n	1	known	missense	c.407	p.G136V	1.000	NULL	pfam_DUF3469,pfscan_Ds-RNA-bd	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564	59	0	0	18	10	35.71	-	-	-	T	184367244	G	T	184367244	3	4	177	1	0	0	0	0	1	0	0	0	3191	1232	43	4	417	4	CDKN2AIP	4	184367244	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	29125211	184367244	6787032	104	10704										
CDKN2AIP	0	genome.wustl.edu	37	chr4	184368038	184368038	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccagttggcttctaagagtAgttctcagactagcacctca	8	12	3	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	184368038	184368038	A	G	SNP	CDKN2AIP	ENST00000504169	human	ensembl	69_37n	1	known	missense	c.1201	p.S401G	0.998	NULL	pfam_DUF3469,pfscan_Ds-RNA-bd	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564	106	0	0	20	14	41.18	-	-	-	G	184368038	A	G	184368038	3	3	177	1	0	0	0	0	1	0	0	0	3191	420	15	5	1211	5	CDKN2AIP	4	184368038	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	794	184368038	6786238	105	10705										
TRIML1	0	genome.wustl.edu	37	chr4	189064805	189064806	+	RNA	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtcattgtgagaaacacctINStgtgttcaccacagcacatc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	4	189064805	189064806	-	C	INS	TRIML1	ENST00000507581	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TRIML1	HGNC	ENSG00000184108	50	0	0	36	8	18.18	-	-	-	C	189064806	-	C	189064805	6	5	177	0	1	1	1	0	0	0	0	0	16646	1624	56	0		0	TRIML1	4	189064805	RNA	INS	-	TCGA-A8-A07R-01A-21W-A050-09	4696767	189064805	2089471	106	10706										
KIAA0947	0	genome.wustl.edu	37	chr5	5469096	5469096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgagagcttttcttaattggGaaaaggtgagccatatttct	10	5	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	5469096	5469096	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.6217	p.E2073K	1.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	250	0	0	149	17	10.24	-	-	-	A	5469096	G	A	5469096	3	1	177	1	0	0	0	0	1	0	0	0	8254	1175	41	2	6275	2	KIAA0947	5	5469096	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		5469096	175446164	107	10707										
CTNND2	0	genome.wustl.edu	37	chr5	11364989	11364990	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catgctggctgctgtatgagINSgctcgggaaccagctgaaat							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	11364989	11364990	-	A	INS	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1191_1190	p.S398fs	1.000:1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	69	0	0	26	61	70.11	-	-	-	A	11364990	-	A	11364989	7	5	177	1	0	1	1	0	0	0	0	0	4052	987	35	0	2546	0	CTNND2	5	11364989	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	5895893	11364989	169550271	108	10708	102	2								
CTNND2	0	genome.wustl.edu	37	chr5	11364993	11364993	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gctggctgctgtatgaggctCgggaaccagctgaaataaat							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	11364993	11364993	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.1187	p.R396Q	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	58	0	0	19	69	78.41	-	-	-	T	11364993	C	T	11364993	3	4	177	1	0	0	0	0	1	0	0	0	4052	884	31	1	2550	1	CTNND2	5	11364993	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4	11364993	169550267	109	10709	102	2								
TRIO	0	genome.wustl.edu	37	chr5	14492843	14492843	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccgccactgaccagtgcccCgcagctgagggctggattcc	13	16	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	14492843	14492843	C	G	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.7800	p.P2600	0.972	superfamily_SH3_domain,smart_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	107	0	0	4	14	77.78	-	-	-	G	14492843	C	G	14492843	2	3	177	1	0	0	0	0	0	0	0	1	16648	639	23	3		3	TRIO	5	14492843	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3127850	14492843	166422417	110	10710										
BASP1	0	genome.wustl.edu	37	chr5	17275511	17275511	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagaagcccgaccaggacgcCgagggcaaggccgaggagaa	17	11	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	17275511	17275511	C	T	SNP	BASP1	ENST00000322611	human	ensembl	69_37n	1	known	silent	c.186	p.A62	0.024	pfam_BASP1	pfam_BASP1	-	no_errors	BASP1	HGNC	ENSG00000176788	23	0	0	7	11	57.89	-	-	-	T	17275511	C	T	17275511	2	4	177	1	0	0	0	0	0	0	0	1	1321	639	23	1		1	BASP1	5	17275511	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2782668	17275511	163639749	111	10711										
SLC45A2	0	genome.wustl.edu	37	chr5	33954536	33954536	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atccaatgaggtggctgatgCaaaggtagcggtagtgagga	16	5	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	33954536	33954536	C	G	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.962	p.C321S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	208	0	0	55	69	55.65	-	-	-	G	33954536	C	G	33954536	3	3	177	1	0	0	0	0	1	0	0	0	14730	710	25	4	661	4	SLC45A2	5	33954536	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	16679025	33954536	146960724	112	10712										
FAM169A	0	genome.wustl.edu	37	chr5	74109758	74109758	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagcatgtgaagcccaaaatCtttacctctgtatttctttc	5	11	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	74109758	74109758	C	A	SNP	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	missense	c.577	p.D193Y	1.000	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	153	0	0	72	118	62.11	-	-	-	A	74109758	C	A	74109758	3	1	177	1	0	0	0	0	1	0	0	0	5527	913	32	2	1467	2	FAM169A	5	74109758	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	40155222	74109758	106805502	113	10713										
THBS4	0	genome.wustl.edu	37	chr5	79354065	79354065	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaagctggtggtgagaggcTcactgttccaggtggccagc	16	9	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	79354065	79354065	T	A	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	missense	c.577	p.S193T	0.999	superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	89	0	0	44	8	15.38	-	-	-	A	79354065	T	A	79354065	3	1	177	1	0	0	0	0	1	0	0	0	15951	1551	54	5	591	5	THBS4	5	79354065	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	5244307	79354065	101561195	114	10714										
VCAN	0	genome.wustl.edu	37	chr5	82817654	82817654	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgagaaaacatccctagagGatattgatttaggctcagga	10	7	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	82817654	82817654	G	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.3529	p.D1177H	0.009	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	138	0	0	108	33	23.4	-	-	-	C	82817654	G	C	82817654	3	2	177	1	0	0	0	0	1	0	0	0	17235	1174	41	2	3551	2	VCAN	5	82817654	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3463589	82817654	98097606	115	10715										
FSTL4	0	genome.wustl.edu	37	chr5	132560879	132560879	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcttcaatgaagagcgaggaGatatcttcatccacacccac	7	12	4	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	132560879	132560879	G	C	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.1275	p.I425M	0.997	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	205	0	0	101	28	21.54	-	-	-	C	132560879	G	C	132560879	3	2	177	1	0	0	0	0	1	0	0	0	6128	932	33	2	1281	2	FSTL4	5	132560879	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	49743225	132560879	48354381	116	10716										
PHF15	0	genome.wustl.edu	37	chr5	133902065	133902066	+	In_Frame_Ins	INS	-	-	CGA													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttctacgagctggtggagccINSggctgaggtggctgagcggc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	133902065	133902066	-	CGA	INS	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	in_frame_ins	c.1277_1278	p.427in_frame_insE	0.998:0.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	27	0	0	28	13	31.71	-	-	-	CGA	133902066	-	CGA	133902065	7	5	177	1	0	1	1	0	0	0	0	0	11900	652	23	0	1259	0	PHF15	5	133902065	In_Frame_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	1341186	133902065	47013195	117	10717	103	2								
PHF15	0	genome.wustl.edu	37	chr5	133902069	133902070	+	Frame_Shift_Del	DEL	TG	TG	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tacgagctggtggagccggcTgaggtggctgagcggctgga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	133902069	133902070	TG	-	DEL	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	frame_shift_del	c.1281_1282	p.E428fs	0.000:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	28	0	0	20	13	39.39	-	-	-	-	133902070	TG	-	133902069	7	5	177	1	0	1	0	1	0	0	0	0	11900	1567	55	0	1263	0	PHF15	5	133902069	Frame_Shift_Del	DEL	TG	TCGA-A8-A07R-01A-21W-A050-09	4	133902069	47013191	118	10718	103	2								
PCDHGB1	0	genome.wustl.edu	37	chr5	140731702	140731702	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acgggtgaggtgcgcacagcGcgtgccttgggcgacaggga	19	10	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	140731702	140731702	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.1875	p.A625	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	24	0	0	2	18	90	-	-	-	A	140731702	G	A	140731702	2	1	177	1	0	0	0	0	0	0	0	1	11635	1074	38	1		1	PCDHGB1	5	140731702	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6829633	140731702	40183558	119	10719										
PCDHGA4	0	genome.wustl.edu	37	chr5	140736102	140736102	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcactgcaagtgatggacatCaatgacaacccacccacttt	6	13	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	140736102	140736102	C	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	silent	c.1335	p.I445	0.904	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	183	0	0	104	38	26.76	-	-	-	A	140736102	C	A	140736102	2	1	177	1	0	0	0	0	0	0	0	1	11629	816	29	2		2	PCDHGA4	5	140736102	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4400	140736102	40179158	120	10720										
PCDHGA11	0	genome.wustl.edu	37	chr5	140802703	140802703	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgcgggcactgctggacagaGacgcgctcaagcagagcctc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	140802703	140802703	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.1909	p.D637N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	35	0	0	12	94	88.68	-	-	-	A	140802703	G	A	140802703	3	1	177	1	0	0	0	0	1	0	0	0	11625	942	33	2	1911	2	PCDHGA11	5	140802703	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	66601	140802703	40112557	121	10721	104	2								
PCDHGA11	0	genome.wustl.edu	37	chr5	140802704	140802704	+	Missense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcgggcactgctggacagagAcgcgctcaagcagagcctcg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	140802704	140802704	A	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.1910	p.D637V	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	36	0	0	10	92	89.32	-	-	-	T	140802704	A	T	140802704	3	4	177	1	0	0	0	0	1	0	0	0	11625	275	10	5	1912	5	PCDHGA11	5	140802704	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	1	140802704	40112556	122	10722	104	2								
ARHGEF37	0	genome.wustl.edu	37	chr5	149001472	149001473	+	Frame_Shift_Del	DEL	AT	AT	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaggaggccgcccggcacacAtaccaggcactcaactcgct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	149001472	149001473	AT	-	DEL	ARHGEF37	ENST00000333677	human	ensembl	69_37n	1	known	frame_shift_del	c.1182_1183	p.Y395fs	0.720:1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111	133	0	0	134	17	11.26	-	-	-	-	149001473	AT	-	149001472	7	5	177	1	0	1	0	1	0	0	0	0	908	204	8	0	1212	0	ARHGEF37	5	149001472	Frame_Shift_Del	DEL	AT	TCGA-A8-A07R-01A-21W-A050-09	8198768	149001472	31913788	123	10723										
FAT2	0	genome.wustl.edu	37	chr5	150946624	150946624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcagtaagattgataaaaggGcgtttgagggatatcactcc	12	6	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	150946624	150946624	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.1869	p.R623	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	308	0	0	149	37	19.89	-	-	-	A	150946624	G	A	150946624	2	1	177	1	0	0	0	0	0	0	0	1	5736	1190	42	4		4	FAT2	5	150946624	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1945152	150946624	29968636	124	10724										
DOCK2	0	genome.wustl.edu	37	chr5	169446012	169446013	+	Frame_Shift_Ins	INS	-	-	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggtaggacctatattagaINSgatgacacttatccctgagg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	169446012	169446013	-	T	INS	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	frame_shift_ins	c.3281_3282	p.E1094fs	1.000:1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	79	0	0	96	22	18.64	-	-	-	T	169446013	-	T	169446012	7	5	177	1	0	1	1	0	0	0	0	0	4722	304	11	0	3411	0	DOCK2	5	169446012	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	18499388	169446012	11469248	125	10725										
ERGIC1	0	genome.wustl.edu	37	chr5	172336761	172336761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtttacccaatctgcactgcGagtgtgagtactccacgcag	10	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	172336761	172336761	G	A	SNP	ERGIC1	ENST00000393784	human	ensembl	69_37n	1	known	missense	c.247	p.E83K	1.000	NULL	pfam_DUF1692	-	no_errors	ERGIC1	HGNC	ENSG00000113719	118	0	0	62	15	19.48	-	-	-	A	172336761	G	A	172336761	3	1	177	1	0	0	0	0	1	0	0	0	5260	1059	37	1	261	1	ERGIC1	5	172336761	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2890749	172336761	8578499	126	10726										
FAM193B	0	genome.wustl.edu	37	chr5	176963678	176963678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgctggctgcgggtggtggcCggtggggctgttagggggag	24	6	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	5	176963678	176963678	C	T	SNP	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	missense	c.418	p.G140S	0.994	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	123	0	0	83	28	25.23	-	-	-	T	176963678	C	T	176963678	3	4	177	1	0	0	0	0	1	0	0	0	5567	652	23	1	1975	1	FAM193B	5	176963678	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4626917	176963678	3951582	127	10727										
OR2B3	0	genome.wustl.edu	37	chr6	29055004	29055004	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tagtataaactcttttggggAgctctcattttcccaattca	6	9	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	29055004	29055004	A	G	SNP	OR2B3	ENST00000377173	human	ensembl	69_37n	-1	known	missense	c.22	p.S8P	0.008	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703	135	0	0	63	71	52.99	-	-	-	G	29055004	A	G	29055004	3	3	177	1	0	0	0	0	1	0	0	0	11063	304	11	5	923	5	OR2B3	6	29055004	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09		29055004	142060063	128	10728										
MDC1	0	genome.wustl.edu	37	chr6	30673139	30673139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gggtcttgacagaggatctaTtttttcttcccctagtagcc	9	10	3	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	30673139	30673139	T	C	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.3821	p.N1274S	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	307	1	0.32	458	51	10	-	-	-	C	30673139	T	C	30673139	3	2	177	1	0	0	0	0	1	0	0	0	9474	1493	52	5	2472	5	MDC1	6	30673139	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1618135	30673139	140441928	129	10729										
C6orf25	0	genome.wustl.edu	37	chr6	31691562	31691562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcctgtgggcctcttcgagcGggacccccaccgtgcctccc	11	19	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	31691562	31691562	G	A	SNP	C6orf25	ENST00000375806	human	ensembl	69_37n	1	known	missense	c.208	p.G70R	0.030	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420	32	0	0	71	40	36.04	-	-	-	A	31691562	G	A	31691562	3	1	177	1	0	0	0	0	1	0	0	0	2381	1116	39	1	214	1	C6orf25	6	31691562	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1018423	31691562	139423505	130	10730										
COL11A2	0	genome.wustl.edu	37	chr6	33152074	33152075	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcctggaacctgtcggctgtINSgggggggacctggagatctg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	33152074	33152075	-	G	INS	COL11A2	ENST00000341947	human	ensembl	69_37n	-1	known	frame_shift_ins	c.967_966	p.T322fs	0.999:0.989	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	73	0	0	17	4	19.05	-	-	-	G	33152075	-	G	33152074	7	5	177	1	0	1	1	0	0	0	0	0	3698	1696	59	0	4479	0	COL11A2	6	33152074	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	1460512	33152074	137962993	131	10731										
ITPR3	0	genome.wustl.edu	37	chr6	33648127	33648127	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaaaatggcctatgtgaacTtcgtgaaccactgctacgtg	10	9	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	33648127	33648127	T	C	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.4246	p.F1416L	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	74	0	0	54	36	40	-	-	-	C	33648127	T	C	33648127	3	2	177	1	0	0	0	0	1	0	0	0	7976	1609	56	5	4372	5	ITPR3	6	33648127	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	496053	33648127	137466940	132	10732										
PPP2R5D	0	genome.wustl.edu	37	chr6	42977150	42977150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagtcctccccatcatgttcCctgcactctacaggaactcc	6	17	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	42977150	42977150	C	A	SNP	PPP2R5D	ENST00000485511	human	ensembl	69_37n	1	known	missense	c.1342	p.P448T	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5D	HGNC	ENSG00000112640	84	0	0	35	14	28.57	-	-	-	A	42977150	C	A	42977150	3	1	177	1	0	0	0	0	1	0	0	0	12472	623	22	4	1388	4	PPP2R5D	6	42977150	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	9329023	42977150	128137917	133	10733										
ENPP4	0	genome.wustl.edu	37	chr6	46108934	46108934	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccgatgaaggctggacaatTgtgctaaatgaatcatcaca	10	8	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	46108934	46108934	T	G	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.972	p.I324M	0.997	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	243	0	0	169	92	34.98	-	-	-	G	46108934	T	G	46108934	3	3	177	1	0	0	0	0	1	0	0	0	5169	1800	63	5	978	5	ENPP4	6	46108934	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	3131784	46108934	125006133	134	10734										
PHF3	0	genome.wustl.edu	37	chr6	64422056	64422056	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtgaaaacaaggagataaaAgttaaagtagataatatttc	9	2	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	64422056	64422056	A	C	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.4572	p.K1524N	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	98	0	0	119	74	38.34	-	-	-	C	64422056	A	C	64422056	3	2	177	1	0	0	0	0	1	0	0	0	11910	69	3	5	4630	5	PHF3	6	64422056	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	18313122	64422056	106693011	135	10735										
EYS	0	genome.wustl.edu	37	chr6	64436527	64436527	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaaaggaagcaaaagacatCcaggataactcattgcttct	8	8	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	64436527	64436527	C	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.8181	p.W2727C	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	116	0	0	167	36	17.73	-	-	-	G	64436527	C	G	64436527	3	3	177	1	0	0	0	0	1	0	0	0	5369	856	30	2	1324	2	EYS	6	64436527	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	14471	64436527	106678540	136	10736										
COL12A1	0	genome.wustl.edu	37	chr6	75839836	75839836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aattggatcaccaacagtggGagaatagatgatcctgtact	10	7	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	75839836	75839836	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.6181	p.P2061S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	176	0	0	204	94	31.54	-	-	-	A	75839836	G	A	75839836	3	1	177	1	0	0	0	0	1	0	0	0	3699	1174	41	2	3130	2	COL12A1	6	75839836	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	11403309	75839836	95275231	137	10737										
FILIP1	0	genome.wustl.edu	37	chr6	76022557	76022557	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgggcctgtctgcaaatgcGcctcttccactttctggagt	11	12	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	76022557	76022557	G	A	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	silent	c.2991	p.G997	0.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	229	0	0	357	118	24.69	-	-	-	A	76022557	G	A	76022557	2	1	177	1	0	0	0	0	0	0	0	1	5940	1074	38	1		1	FILIP1	6	76022557	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	182721	76022557	95092510	138	10738										
MDN1	0	genome.wustl.edu	37	chr6	90397097	90397097	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acgccaccgaatgatcatctGactgatcaaatcaagatgtt	7	10	4	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	90397097	90397097	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	nonsense	c.11416	p.Q3806*	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	164	0	0	58	61	51.26	-	-	-	A	90397097	G	A	90397097	4	1	177	1	0	0	0	0	0	1	0	0	9486	1299	45	2	5514	2	MDN1	6	90397097	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	14374540	90397097	80717970	139	10739										
FAM26E	0	genome.wustl.edu	37	chr6	116832913	116832913	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cttaatcagaaaactgttatTggctacagcttcatggctct	7	9	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	116832913	116832913	T	G	SNP	FAM26E	ENST00000368599	human	ensembl	69_37n	1	known	missense	c.54	p.I18M	0.993	NULL	NULL	-	no_errors	FAM26E	HGNC	ENSG00000178033	245	0	0	158	37	18.97	-	-	-	G	116832913	T	G	116832913	3	3	177	1	0	0	0	0	1	0	0	0	5596	1800	63	5	56	5	FAM26E	6	116832913	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	26435816	116832913	54282154	140	10740										
LATS1	0	genome.wustl.edu	37	chr6	149983176	149983176	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgttgggtgtgtgattttagGaatgtatgaagcagactgct	14	3	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	149983176	149983176	G	C	SNP	LATS1	ENST00000253339	human	ensembl	69_37n	-1	known	missense	c.3082	p.P1028A	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS1	HGNC	ENSG00000131023	166	0	0	107	52	32.7	-	-	-	C	149983176	G	C	149983176	3	2	177	1	0	0	0	0	1	0	0	0	8700	1174	41	2	314	2	LATS1	6	149983176	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	33150263	149983176	21131891	141	10741										
PCMT1	0	genome.wustl.edu	37	chr6	150092324	150092324	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaatcatcaagacagataaaGtatttgaagtgatgctggct	10	5	2	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	150092324	150092324	G	C	SNP	PCMT1	ENST00000367384	human	ensembl	69_37n	1	known	missense	c.256	p.V86L	1.000	pfam_PCMT,tigrfam_PCMT	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265	85	0	0	65	34	34.34	-	-	-	C	150092324	G	C	150092324	3	2	177	1	0	0	0	0	1	0	0	0	11658	1029	36	4	262	4	PCMT1	6	150092324	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	109148	150092324	21022743	142	10742										
SYNJ2	0	genome.wustl.edu	37	chr6	158505094	158505094	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcaatcagcctggagtctcGgacagtgaactcgggggaga	14	9	3	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	158505094	158505094	G	C	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	silent	c.3096	p.S1032	0.432	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	137	0	0	89	16	15.24	-	-	-	C	158505094	G	C	158505094	2	2	177	1	0	0	0	0	0	0	0	1	15545	1103	39	3		3	SYNJ2	6	158505094	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	8412770	158505094	12609973	143	10743										
WTAP	0	genome.wustl.edu	37	chr6	160164787	160164787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggaaaacatccttgtaatgcGactagcaaccaaggaacaag	9	9	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	160164787	160164787	G	A	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	1	known	missense	c.236	p.R79Q	0.974	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	121	0	0	19	42	68.85	-	-	-	A	160164787	G	A	160164787	3	1	177	1	0	0	0	0	1	0	0	0	17506	1058	37	1	250	1	WTAP	6	160164787	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1659693	160164787	10950280	144	10744										
IGF2R	0	genome.wustl.edu	37	chr6	160509069	160509069	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catttgtgtgtttcaggtgaCaaagttgttgtcacgtactc	10	7	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	6	160509069	160509069	C	G	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.6210	p.D2070E	0.931	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	133	0	0	33	50	60.24	-	-	-	G	160509069	C	G	160509069	3	3	177	1	0	0	0	0	1	0	0	0	7630	477	17	4	6376	4	IGF2R	6	160509069	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	344282	160509069	10605998	145	10745										
MICALL2	0	genome.wustl.edu	37	chr7	1474082	1474082	+	RNA	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgccccttgtagggacaggaGgcccttcccgagtccaagtc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	1474082	1474082	G	A	SNP	MICALL2	ENST00000471899	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MICALL2	HGNC	ENSG00000164877	54	0	0	11	35	76.09	-	-	-	A	1474082	G	A	1474082	1	1	177	0	1	0	0	0	0	0	0	0	9645	1015	35	4		4	MICALL2	7	1474082	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		1474082	157664581	146	10746	105	2								
MICALL2	0	genome.wustl.edu	37	chr7	1474084	1474085	+	RNA	DEL	CC	CC	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccccttgtagggacaggaggCccttcccgagtccaagtccg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	1474084	1474085	CC	-	DEL	MICALL2	ENST00000471899	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013:0.015	-	-	-	no_errors	MICALL2	HGNC	ENSG00000164877	52	0	0	10	35	74.47	-	-	-	-	1474085	CC	-	1474084	6	5	177	0	1	1	0	1	0	0	0	0	9645	754	26	0		0	MICALL2	7	1474084	RNA	DEL	CC	TCGA-A8-A07R-01A-21W-A050-09	2	1474084	157664579	147	10747	105	2								
MAD1L1	0	genome.wustl.edu	37	chr7	2054170	2054170	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgtggctgtgcaccttctgCaccatatcctcagcctcccg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	2054170	2054170	C	-	DEL	MAD1L1	ENST00000265854	human	ensembl	69_37n	-1	known	frame_shift_del	c.1326	p.Q443fs	0.999	pfam_MAD	pfam_MAD	-	no_errors	MAD1L1	HGNC	ENSG00000002822	19	0	0	3	2	40	-	-	-	-	2054170	C	-	2054170	7	5	177	1	0	1	0	1	0	0	0	0	9214	697	25	0	858	0	MAD1L1	7	2054170	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	580086	2054170	157084493	148	10748										
SDK1	0	genome.wustl.edu	37	chr7	4116674	4116674	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acggcaggaacgactctcgtCtcacgcacaccctgaacagc	9	16	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	4116674	4116674	C	G	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3055	p.L1019V	0.007	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	171	0	0	104	41	28.28	-	-	-	G	4116674	C	G	4116674	3	3	177	1	0	0	0	0	1	0	0	0	14056	913	32	2	3137	2	SDK1	7	4116674	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2062504	4116674	155021989	149	10749										
STK31	0	genome.wustl.edu	37	chr7	23751906	23751906	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagtaacattttgggcccagGtaaatagcaaactggttgat	10	7	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	23751906	23751906	G	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	splice_site	c.150+1	e3+1	1.000	-	-	-	no_errors	STK31	HGNC	ENSG00000196335	497	0	0	96	269	73.3	-	-	-	T	23751906	G	T	23751906	5	4	177	1	0	0	0	0	0	0	1	0	15387	1275	44	4	161	4	STK31	7	23751906	Splice_Site	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	19635232	23751906	135386757	150	10750										
C7orf25	0	genome.wustl.edu	37	chr7	42949919	42949919	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gatctaacagagcgttgactGctactatgtctcctctcaca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	42949919	42949919	G	-	DEL	C7orf25	ENST00000431882	human	ensembl	69_37n	-1	known	frame_shift_del	c.755	p.A252fs	1.000	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197	135	0	0	85	10	10.53	-	-	-	-	42949919	G	-	42949919	7	5	177	1	0	1	0	1	0	0	0	0	2403	1319	46	0	688	0	C7orf25	7	42949919	Frame_Shift_Del	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	19198013	42949919	116188744	151	10751	106	2								
C7orf25	0	genome.wustl.edu	37	chr7	42949923	42949923	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taacagagcgttgactgctaCtatgtctcctctcacagata							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	42949923	42949923	C	T	SNP	C7orf25	ENST00000431882	human	ensembl	69_37n	-1	known	missense	c.751	p.V251I	1.000	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197	140	0	0	86	12	12.24	-	-	-	T	42949923	C	T	42949923	3	4	177	1	0	0	0	0	1	0	0	0	2403	565	20	4	692	4	C7orf25	7	42949923	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4	42949923	116188740	152	10752	106	2								
PURB	0	genome.wustl.edu	37	chr7	44924216	44924216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcacctcgctcactcgcagAaacaccccgtatttgttgca	6	15	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	44924216	44924216	A	C	SNP	PURB	ENST00000395699	human	ensembl	69_37n	-1	known	missense	c.732	p.F244L	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURB	HGNC	ENSG00000146676	96	0	0	42	9	17.65	-	-	-	C	44924216	A	C	44924216	3	2	177	1	0	0	0	0	1	0	0	0	12911	243	9	5	210	5	PURB	7	44924216	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	1974293	44924216	114214447	153	10753										
ABCA13	0	genome.wustl.edu	37	chr7	48311649	48311649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atgctcagaaactcttggaaTttggcaacgaagtgatttgg	11	6	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	48311649	48311649	T	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.2386	p.F796V	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	123	0	0	41	5	10.87	-	-	-	G	48311649	T	G	48311649	3	3	177	1	0	0	0	0	1	0	0	0	31	1493	52	5	2281	5	ABCA13	7	48311649	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	3387433	48311649	110827014	154	10754										
GUSB	0	genome.wustl.edu	37	chr7	65441060	65441063	+	Frame_Shift_Del	DEL	ACAC	ACAC	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtacggccaccagaggctgAcacctggcaccttaagttgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	ACAC	ACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	65441060	65441063	ACAC	-	DEL	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	frame_shift_del	c.854_851	p.G284fs	0.828:0.831:0.030:0.006	pfam_Glyco_hydro_2_Ig-like,superfamily_Glyco_hydro_2_Ig-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	35	0	0	7	4	36.36	-	-	-	-	65441063	ACAC	-	65441060	7	5	177	1	0	1	0	1	0	0	0	0	6953	275	10	0	1133	0	GUSB	7	65441060	Frame_Shift_Del	DEL	ACAC	TCGA-A8-A07R-01A-21W-A050-09	17129411	65441060	93697603	155	10755										
BCL7B	0	genome.wustl.edu	37	chr7	72951608	72951608	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aaatagaggcagggccaggaGgcggagggccgggatggtgc	21	7	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	72951608	72951608	G	A	SNP	BCL7B	ENST00000463858	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.500	-	-	-	no_errors	BCL7B	HGNC	ENSG00000106635	50	0	0	19	13	40.62	-	-	-	A	72951608	G	A	72951608	1	1	177	0	1	0	0	0	0	0	0	0	1383	1015	35	4		4	BCL7B	7	72951608	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	7510548	72951608	86187055	156	10756										
CLIP2	0	genome.wustl.edu	37	chr7	73791030	73791030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agaagaagatgttggactacGagcggctgcagcgggcagaa	16	7	0	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	73791030	73791030	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.2299	p.E767K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	27	0	0	10	14	58.33	-	-	-	A	73791030	G	A	73791030	3	1	177	1	0	0	0	0	1	0	0	0	3563	1059	37	1	2333	1	CLIP2	7	73791030	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	839422	73791030	85347633	157	10757										
MAGI2	0	genome.wustl.edu	37	chr7	77764386	77764386	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	actaagacctgcatccttgaTgagcttcacgatgtcagcgt	9	11	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	77764386	77764386	T	A	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.2983	p.I995F	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	162	0	0	63	45	41.67	-	-	-	A	77764386	T	A	77764386	3	1	177	1	0	0	0	0	1	0	0	0	9262	1464	51	5	1408	5	MAGI2	7	77764386	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	3973356	77764386	81374277	158	10758										
CAV2	0	genome.wustl.edu	37	chr7	116140292	116140292	+	RNA	DEL	T	T	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggttggctgacagttcggggTccctgcgtcctgtctcctca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	116140292	116140292	T	-	DEL	CAV2	ENST00000495841	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CAV2	HGNC	ENSG00000105971	73	0	0	19	27	56.25	-	-	-	-	116140292	T	-	116140292	6	5	177	0	1	1	0	1	0	0	0	0	2719	1682	58	0		0	CAV2	7	116140292	RNA	DEL	T	TCGA-A8-A07R-01A-21W-A050-09	38375906	116140292	42998371	159	10759										
SLC13A1	0	genome.wustl.edu	37	chr7	122769492	122769492	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cacctcagcacaagctttttGttggactgttttggttttgc	9	9	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	122769492	122769492	G	A	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	nonsense	c.976	p.Q326*	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	540	0	0	656	326	33.16	-	-	-	A	122769492	G	A	122769492	4	1	177	1	0	0	0	0	0	1	0	0	14480	1386	48	4	839	4	SLC13A1	7	122769492	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6629200	122769492	36369171	160	10760										
LRRC4	0	genome.wustl.edu	37	chr7	127670238	127670238	+	Silent	SNP	G	G	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggggttgttgcgaagccaGagctcccgcagcttggacag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	127670238	127670238	G	T	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	silent	c.456	p.L152	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	155	0	0	34	13	27.08	-	-	-	T	127670238	G	T	127670238	2	4	177	1	0	0	0	0	0	0	0	1	9063	929	33	2		2	LRRC4	7	127670238	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	4900746	127670238	31468425	161	10761	107	2								
LRRC4	0	genome.wustl.edu	37	chr7	127670241	127670241	+	Missense_Mutation	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gggttgttgcgaagccagagCtcccgcagcttggacaggta							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	127670241	127670241	C	A	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	missense	c.453	p.E151D	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	155	0	0	34	15	30.61	-	-	-	A	127670241	C	A	127670241	3	1	177	1	0	0	0	0	1	0	0	0	9063	796	28	4	1512	4	LRRC4	7	127670241	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3	127670241	31468422	162	10762	107	2								
FAM131B	0	genome.wustl.edu	37	chr7	143054107	143054107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tccatccatgggtgcttgagCcagggcatctggaaaaagaa	12	9	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	143054107	143054107	C	T	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.619	p.A207T	0.985	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	45	0	0	28	14	33.33	-	-	-	T	143054107	C	T	143054107	3	4	177	1	0	0	0	0	1	0	0	0	5480	739	26	4	467	4	FAM131B	7	143054107	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	15383866	143054107	16084556	163	10763										
PDIA4	0	genome.wustl.edu	37	chr7	148701190	148701190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgtagaactcgatgaggacgTccttcttggggtccatcaca	11	11	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	148701190	148701190	T	C	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.1634	p.D545G	1.000	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	100	0	0	50	22	30.56	-	-	-	C	148701190	T	C	148701190	3	2	177	1	0	0	0	0	1	0	0	0	11743	1667	58	5	307	5	PDIA4	7	148701190	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	5647083	148701190	10437473	164	10764										
ZNF862	0	genome.wustl.edu	37	chr7	149558861	149558861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gattacagaggtgaacgccaCgctgggccgcgcctacgtgg	15	12	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	149558861	149558861	C	T	SNP	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	missense	c.2612	p.T871M	0.079	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	43	0	0	22	4	15.38	-	-	-	T	149558861	C	T	149558861	3	4	177	1	0	0	0	0	1	0	0	0	18288	536	19	1	2638	1	ZNF862	7	149558861	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	857671	149558861	9579802	165	10765										
ABP1	0	genome.wustl.edu	37	chr7	150553777	150553777	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aacaccgtgtttctcatcgaGatgctgctgcccaagaagta	9	11	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	150553777	150553777	G	A	SNP	ABP1	ENST00000416793	human	ensembl	69_37n	1	known	silent	c.219	p.E73	1.000	pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	ABP1	HGNC	ENSG00000002726	154	0	0	169	26	13.33	-	-	-	A	150553777	G	A	150553777	2	1	177	1	0	0	0	0	0	0	0	1	98	933	33	2		2	ABP1	7	150553777	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	994916	150553777	8584886	166	10766										
GALNTL5	0	genome.wustl.edu	37	chr7	151680081	151680081	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgcctgcaggtgtcttcaaAaacattacccagcccgcctc	7	16	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	151680081	151680081	A	G	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	missense	c.379	p.K127E	0.056	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	134	0	0	108	61	36.09	-	-	-	G	151680081	A	G	151680081	3	3	177	1	0	0	0	0	1	0	0	0	6274	15	1	5	389	5	GALNTL5	7	151680081	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	1126304	151680081	7458582	167	10767										
MLL3	0	genome.wustl.edu	37	chr7	151860091	151860091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aagaaaaatttgggcttccaAcagggattgatggtgaatca	11	5	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	7	151860091	151860091	A	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.10571	p.V3524A	0.069	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	196	0	0	160	47	22.49	-	-	-	G	151860091	A	G	151860091	3	3	177	1	0	0	0	0	1	0	0	0	9693	43	2	5	4232	5	MLL3	7	151860091	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	180010	151860091	7278572	168	10768										
CSMD1	0	genome.wustl.edu	37	chr8	2857623	2857623	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctccactaatgtgaccgttcAcaatcgggtctggggaaccg	11	12	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	2857623	2857623	A	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	nonsense	c.6312	p.C2104*	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	97	0	0	51	30	37.04	-	-	-	T	2857623	A	T	2857623	4	4	177	1	0	0	0	0	0	1	0	0	3976	159	6	5	2706	5	CSMD1	8	2857623	Nonsense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09		2857623	143506399	169	10769										
GATA4	0	genome.wustl.edu	37	chr8	11612575	11612575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtccccaggcctcttgcaatGcggaaagaggggatccaaac	12	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	11612575	11612575	G	A	SNP	GATA4	ENST00000335135	human	ensembl	69_37n	1	known	missense	c.930	p.M310I	1.000	smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574	121	0	0	52	9	14.75	-	-	-	A	11612575	G	A	11612575	3	1	177	1	0	0	0	0	1	0	0	0	6306	1319	46	4	944	4	GATA4	8	11612575	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	8754952	11612575	134751447	170	10770										
SORBS3	0	genome.wustl.edu	37	chr8	22414410	22414411	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgagagcggcatgcccattgINSccccccgatccgtgagtcca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	22414410	22414411	-	C	INS	SORBS3	ENST00000240123	human	ensembl	69_37n	1	known	frame_shift_ins	c.403_404	p.R137fs	1.000:1.000	pfam_Sorb,smart_Sorb,pfscan_Sorb	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896	57	0	0	6	2	25	-	-	-	C	22414411	-	C	22414410	7	5	177	1	0	1	1	0	0	0	0	0	15018	1319	46	0	413	0	SORBS3	8	22414410	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	10801835	22414410	123949612	171	10771										
NRG1	0	genome.wustl.edu	37	chr8	32621347	32621347	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcccccaaatcgcccccttcGgaaatgtctccacccgtgtc	6	19	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	32621347	32621347	G	T	SNP	NRG1	ENST00000338921	human	ensembl	69_37n	1	known	silent	c.1374	p.S458	0.985	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EGF-like,pfscan_EG-like_dom,pfscan_Ig-like,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168	112	0	0	109	23	17.42	-	-	-	T	32621347	G	T	32621347	2	4	177	1	0	0	0	0	0	0	0	1	10720	1103	39	3		3	NRG1	8	32621347	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	10206937	32621347	113742675	172	10772										
ANK1	0	genome.wustl.edu	37	chr8	41530136	41530136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagagcccaactcggggcccCgcggttcctctgagagtgcc	14	15	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	41530136	41530136	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.4832	p.R1611Q	0.994	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	155	0	0	66	55	45.45	-	-	-	T	41530136	C	T	41530136	3	4	177	1	0	0	0	0	1	0	0	0	620	652	23	1	1159	1	ANK1	8	41530136	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	8908789	41530136	104833886	173	10773										
CLVS1	0	genome.wustl.edu	37	chr8	62412081	62412081	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagagaatgagaacacccagCcactcctggctctggactga	11	12	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	62412081	62412081	C	G	SNP	CLVS1	ENST00000325897	human	ensembl	69_37n	1	known	missense	c.1045	p.P349A	1.000	NULL	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS1	HGNC	ENSG00000177182	140	0	0	197	62	23.94	-	-	-	G	62412081	C	G	62412081	3	3	177	1	0	0	0	0	1	0	0	0	3601	739	26	4	1063	4	CLVS1	8	62412081	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	20881945	62412081	83951941	174	10774										
PREX2	0	genome.wustl.edu	37	chr8	69002895	69002895	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caatgtcagcaaagagacacAtgccagtgtcattgcacacg	9	11	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	69002895	69002895	A	C	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.2195	p.H732P	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	156	0	0	103	12	10.43	-	-	-	C	69002895	A	C	69002895	3	2	177	1	0	0	0	0	1	0	0	0	12558	217	8	5	2273	5	PREX2	8	69002895	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	6590814	69002895	77361127	175	10775										
ZBTB10	0	genome.wustl.edu	37	chr8	81399784	81399784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtctctaatgcagaagctcCaatgctccttccagacctcc	6	15	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	81399784	81399784	C	G	SNP	ZBTB10	ENST00000426744	human	ensembl	69_37n	1	known	missense	c.739	p.Q247E	0.999	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189	69	0	0	51	19	26.76	-	-	-	G	81399784	C	G	81399784	3	3	177	1	0	0	0	0	1	0	0	0	17619	595	21	4	741	4	ZBTB10	8	81399784	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	12396889	81399784	64964238	176	10776										
PTDSS1	0	genome.wustl.edu	37	chr8	97285557	97285557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttccagaagacaacatctgGagaggcatcctctctgttat	9	10	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	97285557	97285557	G	T	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	missense	c.210	p.W70C	1.000	NULL	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	519	1	0.19	883	207	18.99	-	-	-	T	97285557	G	T	97285557	3	4	177	1	0	0	0	0	1	0	0	0	12816	1183	41	2	216	2	PTDSS1	8	97285557	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	15885773	97285557	49078465	177	10777										
NCALD	0	genome.wustl.edu	37	chr8	102701354	102701354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cacaagcacactggggctctGggcattcccacgaagcatcc	10	15	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	102701354	102701354	G	A	SNP	NCALD	ENST00000522951	human	ensembl	69_37n	-1	putative	missense	c.518	p.P173L	0.998	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490	13	0	0	14	6	30	-	-	-	A	102701354	G	A	102701354	3	1	177	1	0	0	0	0	1	0	0	0	10273	1363	47	4		4	NCALD	8	102701354	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5415797	102701354	43662668	178	10778										
TMEM74	0	genome.wustl.edu	37	chr8	109796471	109796471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttccagagtgttttcattcGtgctggttttcatcctgaag	10	8	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	109796471	109796471	G	A	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.857	p.T286M	0.001	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	155	0	0	178	37	17.05	-	-	-	A	109796471	G	A	109796471	3	1	177	1	0	0	0	0	1	0	0	0	16297	1145	40	1	64	1	TMEM74	8	109796471	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	7095117	109796471	36567551	179	10779										
PKHD1L1	0	genome.wustl.edu	37	chr8	110520355	110520355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagattcaacctgtaagtacCttccagagtggcagagctat	10	9	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	110520355	110520355	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11257	p.L3753F	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	318	0	0	500	176	26.04	-	-	-	T	110520355	C	T	110520355	3	4	177	1	0	0	0	0	1	0	0	0	12046	681	24	4	11535	4	PKHD1L1	8	110520355	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	723884	110520355	35843667	180	10780										
MTSS1	0	genome.wustl.edu	37	chr8	125601952	125601952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atcagacaatcaattaaagcGcttttaccaagcggggggga	11	8	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	125601952	125601952	G	T	SNP	MTSS1	ENST00000518547	human	ensembl	69_37n	-1	known	missense	c.294	p.S98R	0.996	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873	121	0	0	208	25	10.68	-	-	-	T	125601952	G	T	125601952	3	4	177	1	0	0	0	0	1	0	0	0	10034	1101	38	3	2013	3	MTSS1	8	125601952	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	15081597	125601952	20762070	181	10781										
ZNF572	0	genome.wustl.edu	37	chr8	125988800	125988800	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caagtcagagaattggggaaAttttatagctaaagaggagg	13	3	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	125988800	125988800	A	T	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	missense	c.290	p.N97I	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	204	0	0	364	62	14.55	-	-	-	T	125988800	A	T	125988800	3	4	177	1	0	0	0	0	1	0	0	0	18100	101	4	5	296	5	ZNF572	8	125988800	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	386848	125988800	20375222	182	10782										
COL22A1	0	genome.wustl.edu	37	chr8	139701178	139701178	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	accttctcaccacgctccccAtctttccctggggtgcctct	6	19	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	139701178	139701178	A	G	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	silent	c.2844	p.D948	0.994	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	213	1	0.47	64	8	11.11	-	-	-	G	139701178	A	G	139701178	2	3	177	1	0	0	0	0	0	0	0	1	3711	214	8	5		5	COL22A1	8	139701178	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	13712378	139701178	6662844	183	10783										
DENND3	0	genome.wustl.edu	37	chr8	142178166	142178167	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaaatccactttccgctggaINSgagcaagtgcgtgcaggcat							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	142178166	142178167	-	C	INS	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	frame_shift_ins	c.1577_1578	p.E526fs	0.996:0.992	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	94	0	0	36	6	14.29	-	-	-	C	142178167	-	C	142178166	7	5	177	1	0	1	1	0	0	0	0	0	4468	304	11	0	1623	0	DENND3	8	142178166	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	2476988	142178166	4185856	184	10784										
EPPK1	0	genome.wustl.edu	37	chr8	144941722	144941722	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtggagggcaccgtgaccccCgcaatgcagccgctgccttc	13	16	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	144941722	144941722	C	G	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.5700	p.A1900	0.069	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	193	0	0	8	5	38.46	-	-	-	G	144941722	C	G	144941722	2	3	177	1	0	0	0	0	0	0	0	1	5227	639	23	3		3	EPPK1	8	144941722	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2763556	144941722	1422300	185	10785										
FOXH1	0	genome.wustl.edu	37	chr8	145699932	145699932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtcccccgctggaccgtcCcccaggaactgcggtgccct	12	18	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	8	145699932	145699932	C	T	SNP	FOXH1	ENST00000377317	human	ensembl	69_37n	-1	known	missense	c.787	p.G263R	0.002	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXH1	HGNC	ENSG00000160973	26	0	0	6	8	57.14	-	-	-	T	145699932	C	T	145699932	3	4	177	1	0	0	0	0	1	0	0	0	6056	632	22	4	314	4	FOXH1	8	145699932	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	758210	145699932	664090	186	10786										
VLDLR	0	genome.wustl.edu	37	chr9	2643253	2643254	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggccaggatgactgcagcgaINStggcagtgatgagctggact							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	2643253	2643254	-	C	INS	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	frame_shift_ins	c.542_543	p.G182fs	1.000:1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	40	0	0	51	24	32	-	-	-	C	2643254	-	C	2643253	7	5	177	1	0	1	1	0	0	0	0	0	17271	333	12	0	560	0	VLDLR	9	2643253	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09		2643253	138570178	187	10787	108	2								
VLDLR	0	genome.wustl.edu	37	chr9	2643257	2643257	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caggatgactgcagcgatggCagtgatgagctggactgtgc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	2643257	2643257	C	-	DEL	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	frame_shift_del	c.546	p.S183fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	41	0	0	56	24	30	-	-	-	-	2643257	C	-	2643257	7	5	177	1	0	1	0	1	0	0	0	0	17271	697	25	0	564	0	VLDLR	9	2643257	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	4	2643257	138570174	188	10788	108	2								
JAK2	0	genome.wustl.edu	37	chr9	5022151	5022151	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaaatctgaggcagattatcTgacctttccatctggggagt	11	8	3	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	5022151	5022151	T	C	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	missense	c.164	p.L55P	0.650	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	275	0	0	492	372	43.06	-	-	-	C	5022151	T	C	5022151	3	2	177	1	0	0	0	0	1	0	0	0	7992	1580	55	5	166	5	JAK2	9	5022151	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2378894	5022151	136191280	189	10789										
ACO1	0	genome.wustl.edu	37	chr9	32440470	32440470	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttctcttcctcagcttgatgTgtttgatgctgctgagcggt	11	9	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	32440470	32440470	T	A	SNP	ACO1	ENST00000309951	human	ensembl	69_37n	1	known	missense	c.2255	p.V752E	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729	77	0	0	70	23	24.73	-	-	-	A	32440470	T	A	32440470	3	1	177	1	0	0	0	0	1	0	0	0	146	1696	59	5	2325	5	ACO1	9	32440470	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	27418319	32440470	108772961	190	10790										
UBAP2	0	genome.wustl.edu	37	chr9	33922571	33922571	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacttgggctgcagggagctGggctggctgcgctgacccga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	33922571	33922571	G	-	DEL	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	frame_shift_del	c.3291	p.S1098fs	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	114	0	0	111	16	12.6	-	-	-	-	33922571	G	-	33922571	7	5	177	1	0	1	0	1	0	0	0	0	16934	1335	47	0	72	0	UBAP2	9	33922571	Frame_Shift_Del	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	1482101	33922571	107290860	191	10791										
DNAI1	0	genome.wustl.edu	37	chr9	34500814	34500814	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caaaatgacaaagccaagcgCctgtccgtcactgccctctg	8	15	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	34500814	34500814	C	A	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	silent	c.996	p.R332	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	190	0	0	150	80	34.63	-	-	-	A	34500814	C	A	34500814	2	1	177	1	0	0	0	0	0	0	0	1	4644	726	26	4		4	DNAI1	9	34500814	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	578243	34500814	106712617	192	10792										
WNK2	0	genome.wustl.edu	37	chr9	96015239	96015240	+	Frame_Shift_Ins	INS	-	-	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagccagcagagcgtgatgcINSttggctcccttgccgacgca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	96015239	96015240	-	T	INS	WNK2	ENST00000297954	human	ensembl	69_37n	1	known	frame_shift_ins	c.1909_1910	p.G638fs	0.985:0.944	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	17	0	0	6	4	40	-	-	-	T	96015240	-	T	96015239	7	5	177	1	0	1	1	0	0	0	0	0	17475	797	28	0	1939	0	WNK2	9	96015239	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	61514425	96015239	45198192	193	10793	109	2								
WNK2	0	genome.wustl.edu	37	chr9	96015243	96015244	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagcagagcgtgatgcttggINSctcccttgccgacgcagcgc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	96015243	96015244	-	C	INS	WNK2	ENST00000297954	human	ensembl	69_37n	1	known	frame_shift_ins	c.1913_1914	p.S639fs	0.469:0.438	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	17	0	0	6	4	40	-	-	-	C	96015244	-	C	96015243	7	5	177	1	0	1	1	0	0	0	0	0	17475	1203	42	0	1943	0	WNK2	9	96015243	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	4	96015243	45198188	194	10794	109	2								
PTPDC1	0	genome.wustl.edu	37	chr9	96860178	96860178	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccctgactcatctgaaaaggCggctcagctacagtgactca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	96860178	96860178	C	-	DEL	PTPDC1	ENST00000375360	human	ensembl	69_37n	1	known	frame_shift_del	c.1168	p.R390fs	0.355	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	107	0	0	72	39	35.14	-	-	-	-	96860178	C	-	96860178	7	5	177	1	0	1	0	1	0	0	0	0	12854	759	27	0	1432	0	PTPDC1	9	96860178	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	844935	96860178	44353253	195	10795										
OR13C9	0	genome.wustl.edu	37	chr9	107380041	107380041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttgacaatccctgcaaaccAggacccaacagccatgggta	9	13	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	107380041	107380041	A	T	SNP	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	missense	c.445	p.W149R	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	236	0	0	176	93	34.57	-	-	-	T	107380041	A	T	107380041	3	4	177	1	0	0	0	0	1	0	0	0	11012	188	7	5	514	5	OR13C9	9	107380041	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	10519863	107380041	33833390	196	10796										
NEK6	0	genome.wustl.edu	37	chr9	127054804	127054804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggatgggattctagatgctCgcctgggacccagggtgagt	16	8	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	127054804	127054804	C	T	SNP	NEK6	ENST00000539416	human	ensembl	69_37n	1	known	missense	c.32	p.S11L	0.003	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408	117	0	0	25	5	16.67	-	-	-	T	127054804	C	T	127054804	3	4	177	1	0	0	0	0	1	0	0	0	10400	893	31	1	63	1	NEK6	9	127054804	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	19674763	127054804	14158627	197	10797										
GARNL3	0	genome.wustl.edu	37	chr9	130155392	130155392	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggctccttggaaagtgcttcTacttccgaagccaaccctga	9	13	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	130155392	130155392	T	A	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	silent	c.2901	p.S967	0.000	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	101	0	0	44	9	16.98	-	-	-	A	130155392	T	A	130155392	2	1	177	1	0	0	0	0	0	0	0	1	6291	1509	53	5		5	GARNL3	9	130155392	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	3100588	130155392	11058039	198	10798										
LRSAM1	0	genome.wustl.edu	37	chr9	130245270	130245271	+	Frame_Shift_Del	DEL	CT	CT	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtccataacccaggaggagaCtgagagcctgcggcgacgtg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	130245270	130245271	CT	-	DEL	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	frame_shift_del	c.1130_1131	p.T377fs	0.981:0.571	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	282	0	0	159	34	17.17	-	-	-	-	130245271	CT	-	130245270	7	5	177	1	0	1	0	1	0	0	0	0	9109	565	20	0	1184	0	LRSAM1	9	130245270	Frame_Shift_Del	DEL	CT	TCGA-A8-A07R-01A-21W-A050-09	89878	130245270	10968161	199	10799										
SH2D3C	0	genome.wustl.edu	37	chr9	130509542	130509542	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggagtcccgagggcggggcAgcgacgtactgtggagcaga	19	9	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	130509542	130509542	A	G	SNP	SH2D3C	ENST00000314830	human	ensembl	69_37n	-1	known	missense	c.1148	p.L383P	0.883	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370	48	0	0	28	63	69.23	-	-	-	G	130509542	A	G	130509542	3	3	177	1	0	0	0	0	1	0	0	0	14322	188	7	5	1462	5	SH2D3C	9	130509542	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	264272	130509542	10703889	200	10800										
CERCAM	0	genome.wustl.edu	37	chr9	131198057	131198059	+	In_Frame_Del	DEL	CAT	CAT	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgacacggagacatcctctcCatgggatgatgacagcggcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	131198057	131198059	CAT	-	DEL	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	in_frame_del	c.1661_1663	p.PW554in_frame_delR	0.024:0.022:0.997	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	23	0	0	15	9	36	-	-	-	-	131198059	CAT	-	131198057	7	5	177	1	0	1	0	1	0	0	0	0	3295	594	21	0	1707	0	CERCAM	9	131198057	In_Frame_Del	DEL	CAT	TCGA-A8-A07R-01A-21W-A050-09	688515	131198057	10015374	201	10801										
PPP2R4	0	genome.wustl.edu	37	chr9	131890307	131890307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagtgtgtcctgcgatgaatGcataccattaccccgcgccg	11	13	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	131890307	131890307	G	C	SNP	PPP2R4	ENST00000452489	human	ensembl	69_37n	1	known	missense	c.281	p.C94S	0.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383	201	0	0	100	15	13.04	-	-	-	C	131890307	G	C	131890307	3	2	177	1	0	0	0	0	1	0	0	0	12468	1319	46	4	295	4	PPP2R4	9	131890307	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	692250	131890307	9323124	202	10802										
C9orf106	0	genome.wustl.edu	37	chr9	132084262	132084262	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccttcccttcagtgcctcttCctctgggaagtcctctctgg	8	16	4	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	132084262	132084262	C	T	SNP	C9orf106	ENST00000316786	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	C9orf106	HGNC	ENSG00000179082	226	1	0.44	16	47	74.6	-	-	-	T	132084262	C	T	132084262	1	4	177	0	1	0	0	0	0	0	0	0	2472	855	30	2		2	C9orf106	9	132084262	RNA	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	193955	132084262	9129169	203	10803										
DDX31	0	genome.wustl.edu	37	chr9	135505736	135505736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gctcccatggcagccaatccGggcggttcttccaatccggt	11	15	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	135505736	135505736	G	A	SNP	DDX31	ENST00000372159	human	ensembl	69_37n	-1	known	missense	c.1861	p.R621W	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	123	0	0	106	40	27.21	-	-	-	A	135505736	G	A	135505736	3	1	177	1	0	0	0	0	1	0	0	0	4387	1115	39	1	714	1	DDX31	9	135505736	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3421474	135505736	5707695	204	10804										
PNPLA7	0	genome.wustl.edu	37	chr9	140356142	140356142	+	RNA	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtccccagcctgcttcctgtGgggaggccccacccaccctg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	9	140356142	140356142	G	-	DEL	PNPLA7	ENST00000492278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PNPLA7	HGNC	ENSG00000130653	49	0	0	8	16	66.67	-	-	-	-	140356142	G	-	140356142	6	5	177	0	1	1	0	1	0	0	0	0	12244	1363	47	0		0	PNPLA7	9	140356142	RNA	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	4850406	140356142	857289	205	10805										
DIP2C	0	genome.wustl.edu	37	chr10	402402	402402	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtagaggatgtggtccggGgtggtctgtgctctccactg	17	8	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	402402	402402	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.2949	p.T983	0.070	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	183	0	0	66	9	12	-	-	-	A	402402	G	A	402402	2	1	177	1	0	0	0	0	0	0	0	1	4565	1219	43	4		4	DIP2C	10	402402	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		402402	135132345	206	10806										
AKR1C4	0	genome.wustl.edu	37	chr10	5248263	5248263	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggagaagtgtaaggatgcagGattggccaagtccatcgggg	17	6	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	5248263	5248263	G	C	SNP	AKR1C4	ENST00000263126	human	ensembl	69_37n	1	known	missense	c.473	p.G158A	0.994	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610	349	1	0.29	835	147	14.94	-	-	-	C	5248263	G	C	5248263	3	2	177	1	0	0	0	0	1	0	0	0	472	1174	41	2	491	2	AKR1C4	10	5248263	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	4845861	5248263	130286484	207	10807										
ITIH2	0	genome.wustl.edu	37	chr10	7769757	7769757	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaccccaactccgtctcgctGatcattttggtttctgatgg	9	12	3	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	7769757	7769757	G	C	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	silent	c.1245	p.L415	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	243	0	0	1135	173	13.2	-	-	-	C	7769757	G	C	7769757	2	2	177	1	0	0	0	0	0	0	0	1	7958	1277	45	2		2	ITIH2	10	7769757	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2521494	7769757	127764990	208	10808										
THNSL1	0	genome.wustl.edu	37	chr10	25314045	25314045	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctagcagctattaactccacCtataatacttcagggtatat	5	10	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	25314045	25314045	C	G	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	silent	c.1893	p.T631	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	128	0	0	253	30	10.6	-	-	-	G	25314045	C	G	25314045	2	3	177	1	0	0	0	0	0	0	0	1	15957	668	24	4		4	THNSL1	10	25314045	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	17544288	25314045	110220702	209	10809										
NRP1	0	genome.wustl.edu	37	chr10	33475378	33475378	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcgagccactttgcccttctGattttcgtcagcttgggaat	10	11	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	33475378	33475378	G	A	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	nonsense	c.2101	p.Q701*	1.000	pirsf_Neuropilin,pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	128	0	0	79	82	50.62	-	-	-	A	33475378	G	A	33475378	4	1	177	1	0	0	0	0	0	1	0	0	10733	1299	45	2	686	2	NRP1	10	33475378	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	8161333	33475378	102059369	210	10810										
TET1	0	genome.wustl.edu	37	chr10	70333955	70333955	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aacagccatcagatctgtaaGaaaagaaaatgtgaggagct	10	6	2	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	70333955	70333955	G	A	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.1860	p.K620	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	92	0	0	58	12	17.14	-	-	-	A	70333955	G	A	70333955	2	1	177	1	0	0	0	0	0	0	0	1	15864	933	33	2		2	TET1	10	70333955	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	36858577	70333955	65200792	211	10811										
HKDC1	0	genome.wustl.edu	37	chr10	71003105	71003105	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctggacctcggctctctcAacccaggaaagcaactgtga	10	13	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	71003105	71003105	A	C	SNP	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	missense	c.859	p.N287H	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	75	0	0	42	21	33.33	-	-	-	C	71003105	A	C	71003105	3	2	177	1	0	0	0	0	1	0	0	0	7244	130	5	5	885	5	HKDC1	10	71003105	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	669150	71003105	64531642	212	10812										
CAMK2G	0	genome.wustl.edu	37	chr10	75620617	75620617	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gatgtttcagaagtcgacatAtccgagcctcacgttctagt	9	10	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	75620617	75620617	A	G	SNP	CAMK2G	ENST00000423381	human	ensembl	69_37n	-1	known	missense	c.191	p.I64T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660	301	1	0.33	119	71	37.17	-	-	-	G	75620617	A	G	75620617	3	3	177	1	0	0	0	0	1	0	0	0	2627	449	16	5	1655	5	CAMK2G	10	75620617	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	4617512	75620617	59914130	213	10813										
OPN4	0	genome.wustl.edu	37	chr10	88422113	88422113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctccacccaccgctccacgcTgaccagccacacctccaacc	4	24	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	88422113	88422113	T	C	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	1	known	missense	c.1211	p.L404P	0.227	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	28	0	0	10	6	37.5	-	-	-	C	88422113	T	C	88422113	3	2	177	1	0	0	0	0	1	0	0	0	10955	1580	55	5	1245	5	OPN4	10	88422113	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	12801496	88422113	47112634	214	10814										
SLC16A12	0	genome.wustl.edu	37	chr10	91195821	91195821	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctctctggaaacttacctgcGatgggtgggctcaccaagta	11	11	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	91195821	91195821	G	A	SNP	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	silent	c.1284	p.I428	0.816	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	230	0	0	31	88	73.95	-	-	-	A	91195821	G	A	91195821	2	1	177	1	0	0	0	0	0	0	0	1	14494	1048	37	1		1	SLC16A12	10	91195821	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2773708	91195821	44338926	215	10815										
CYP2C19	0	genome.wustl.edu	37	chr10	96535496	96535496	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acaggcatgattgtgcatacAgtgtgggtataaaagttcat	11	5	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	96535496	96535496	A	G	SNP	CYP2C19	ENST00000480405	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYP2C19	HGNC	ENSG00000165841	64	0	0	40	39	49.37	-	-	-	G	96535496	A	G	96535496	1	3	177	0	1	0	0	0	0	0	0	0	4197	203	7	5		5	CYP2C19	10	96535496	RNA	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	5339675	96535496	38999251	216	10816										
ZNF518A	0	genome.wustl.edu	37	chr10	97919091	97919091	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccccagctcgtggaactgtGactaaggagccttgcaaaac	11	12	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	97919091	97919091	G	C	SNP	ZNF518A	ENST00000316045	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	58	0	0	27	6	18.18	-	-	-	C	97919091	G	C	97919091	1	2	177	0	1	0	0	0	0	0	0	0	18058	1277	45	2		2	ZNF518A	10	97919091	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1383595	97919091	37615656	217	10817										
GOT1	0	genome.wustl.edu	37	chr10	101157315	101157315	+	Missense_Mutation	SNP	T	T	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtgtttcttcactggatttTggtgactgcttcatggatgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	101157315	101157315	T	G	SNP	GOT1	ENST00000370508	human	ensembl	69_37n	-1	known	missense	c.1231	p.K411Q	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Asp_trans	-	no_errors	GOT1	HGNC	ENSG00000120053	287	0	0	244	39	13.78	-	-	-	G	101157315	T	G	101157315	3	3	177	1	0	0	0	0	1	0	0	0	6628	1821	63	5	14	5	GOT1	10	101157315	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	3238224	101157315	34377432	218	10818	110	2								
GOT1	0	genome.wustl.edu	37	chr10	101157317	101157318	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtttcttcactggattttggINStgactgcttcatggatggag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	101157317	101157318	-	A	INS	GOT1	ENST00000370508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1229_1228	p.T410fs	1.000:1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Asp_trans	-	no_errors	GOT1	HGNC	ENSG00000120053	285	0	0	241	34	12.36	-	-	-	A	101157318	-	A	101157317	7	5	177	1	0	1	1	0	0	0	0	0	6628	1261	44	0	16	0	GOT1	10	101157317	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	2	101157317	34377430	219	10819	110	2								
ENTPD7	0	genome.wustl.edu	37	chr10	101455752	101455752	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgctggctgagttcaacctgGgctgtgatgtgcaacacact	12	10	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	101455752	101455752	G	C	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.883	p.G295R	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	223	0	0	71	230	76.16	-	-	-	C	101455752	G	C	101455752	3	2	177	1	0	0	0	0	1	0	0	0	5181	1232	43	4	913	4	ENTPD7	10	101455752	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	298435	101455752	34078995	220	10820										
C10orf2	0	genome.wustl.edu	37	chr10	102748271	102748271	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgttaccacttccttcagcCtcttcattgacaagaccaca	5	14	3	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	102748271	102748271	C	A	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.304	p.L102I	1.000	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	87	0	0	40	5	11.11	-	-	-	A	102748271	C	A	102748271	3	1	177	1	0	0	0	0	1	0	0	0	1607	681	24	4	306	4	C10orf2	10	102748271	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1292519	102748271	32786476	221	10821										
FAM53B	0	genome.wustl.edu	37	chr10	126370309	126370310	+	Frame_Shift_Ins	INS	-	-	CCAA													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggaaaggccgctggagcgtcINStcgccagctctggtgttgag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	10	126370309	126370310	-	CCAA	INS	FAM53B	ENST00000337318	human	ensembl	69_37n	-1	known	frame_shift_ins	c.773_772	p.R258fs	0.688:0.034	NULL	NULL	-	no_errors	FAM53B	HGNC	ENSG00000189319	61	0	0	28	8	22.22	-	-	-	CCAA	126370310	-	CCAA	126370309	7	5	177	1	0	1	1	0	0	0	0	0	5626	913	32	0	503	0	FAM53B	10	126370309	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	23622038	126370309	9164438	222	10822										
DEAF1	0	genome.wustl.edu	37	chr11	684947	684947	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggtgcaagaggcagcgtgaGggtttaagatcccatcctga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	684947	684947	G	A	SNP	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	missense	c.821	p.P274L	1.000	superfamily_SAND_dom-like	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	109	0	0	69	476	87.34	-	-	-	A	684947	G	A	684947	3	1	177	1	0	0	0	0	1	0	0	0	4411	1000	35	4	904	4	DEAF1	11	684947	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		684947	134321569	223	10823	111	2								
DEAF1	0	genome.wustl.edu	37	chr11	684948	684948	+	Missense_Mutation	SNP	G	G	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtgcaagaggcagcgtgagGgtttaagatcccatcctgag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	684948	684948	G	T	SNP	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	missense	c.820	p.P274T	1.000	superfamily_SAND_dom-like	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	107	1	0.93	69	470	86.88	-	-	-	T	684948	G	T	684948	3	4	177	1	0	0	0	0	1	0	0	0	4411	1232	43	4	905	4	DEAF1	11	684948	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1	684948	134321568	224	10824	111	2								
OR52K2	0	genome.wustl.edu	37	chr11	4471322	4471322	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tctcatataggtgccatcttAgccttctacacaactgtggt	7	11	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	4471322	4471322	A	T	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	missense	c.753	p.L251F	0.072	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	478	0	0	723	346	32.34	-	-	-	T	4471322	A	T	4471322	3	4	177	1	0	0	0	0	1	0	0	0	11197	417	15	5	755	5	OR52K2	11	4471322	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3786374	4471322	130535194	225	10825										
OR56A1	0	genome.wustl.edu	37	chr11	6048683	6048683	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggccaggaccttggggatGacggtgaggcagagcacgat	17	8	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	6048683	6048683	G	A	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	silent	c.252	p.V84	0.731	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	317	1	0.31	497	123	19.84	-	-	-	A	6048683	G	A	6048683	2	1	177	1	0	0	0	0	0	0	0	1	11206	1277	45	2		2	OR56A1	11	6048683	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1577361	6048683	128957833	226	10826										
DCHS1	0	genome.wustl.edu	37	chr11	6644446	6644446	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccgggcaccttcgggcacttGgaagtggaaagctggtgcca	15	11	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	6644446	6644446	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.8461	p.Q2821E	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	52	0	0	16	14	45.16	-	-	-	C	6644446	G	C	6644446	3	2	177	1	0	0	0	0	1	0	0	0	4318	1357	47	4	1439	4	DCHS1	11	6644446	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	595763	6644446	128362070	227	10827										
DENND5A	0	genome.wustl.edu	37	chr11	9225258	9225258	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aagggcacaagtaaaaagctGaaacacattctccaccccga	7	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	9225258	9225258	G	A	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	nonsense	c.898	p.Q300*	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	52	0	0	30	12	28.57	-	-	-	A	9225258	G	A	9225258	4	1	177	1	0	0	0	0	0	1	0	0	4472	1299	45	2	3045	2	DENND5A	11	9225258	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2580812	9225258	125781258	228	10828										
TMEM41B	0	genome.wustl.edu	37	chr11	9316935	9316935	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcatattcactctttcttctCtgaagaaataaagtgaaaaa	4	7	5	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	9316935	9316935	C	G	SNP	TMEM41B	ENST00000299596	human	ensembl	69_37n	-1	known	splice_site	c.240-1	e3-1	1.000	-	-	-	no_errors	TMEM41B	HGNC	ENSG00000166471	162	0	0	70	33	32.04	-	-	-	G	9316935	C	G	9316935	5	3	177	1	0	0	0	0	0	0	1	0	16260	927	32	2	672	2	TMEM41B	11	9316935	Splice_Site	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	91677	9316935	125689581	229	10829										
AMPD3	0	genome.wustl.edu	37	chr11	10483070	10483070	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttctttgctagctgagatgCcgcggcagtttcccaagctg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	10483070	10483070	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	missense	c.4	p.P2S	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	66	0	0	46	11	19.3	-	-	-	T	10483070	C	T	10483070	3	4	177	1	0	0	0	0	1	0	0	0	587	739	26	4	57	4	AMPD3	11	10483070	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1166135	10483070	124523446	230	10830	112	3								
AMPD3	0	genome.wustl.edu	37	chr11	10483072	10483072	+	Silent	SNP	G	G	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tctttgctagctgagatgccGcggcagtttcccaagctgaa							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	10483072	10483072	G	T	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	silent	c.6	p.P2	0.679	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	66	0	0	47	11	18.97	-	-	-	T	10483072	G	T	10483072	2	4	177	1	0	0	0	0	0	0	0	1	587	1074	38	3		3	AMPD3	11	10483072	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2	10483072	124523444	231	10831	112	3								
AMPD3	0	genome.wustl.edu	37	chr11	10483076	10483076	+	Nonsense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgctagctgagatgccgcggCagtttcccaagctgaacatc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	10483076	10483076	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	nonsense	c.10	p.Q4*	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	70	0	0	48	12	20	-	-	-	T	10483076	C	T	10483076	4	4	177	1	0	0	0	0	0	1	0	0	587	711	25	4	63	4	AMPD3	11	10483076	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4	10483076	124523440	232	10832	112	3								
KCNJ11	0	genome.wustl.edu	37	chr11	17408699	17408699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctacaatgggcacaaagcGctggccccacaggatctcat	10	13	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	17408699	17408699	G	T	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	missense	c.940	p.R314S	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	138	0	0	63	8	11.27	-	-	-	T	17408699	G	T	17408699	3	4	177	1	0	0	0	0	1	0	0	0	8099	1087	38	3	236	3	KCNJ11	11	17408699	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6925623	17408699	117597817	233	10833										
OR4C13	0	genome.wustl.edu	37	chr11	49974137	49974137	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgccagcccatcactgagaTcccccatgtactttttcctg	6	16	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	49974137	49974137	T	A	SNP	OR4C13	ENST00000555099	human	ensembl	69_37n	1	known	missense	c.163	p.S55T	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C13	HGNC	ENSG00000258817	388	0	0	1069	211	16.45	-	-	-	A	49974137	T	A	49974137	3	1	177	1	0	0	0	0	1	0	0	0	11120	1435	50	5	165	5	OR4C13	11	49974137	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	32565438	49974137	85032379	234	10834										
OR5T1	0	genome.wustl.edu	37	chr11	56043743	56043743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cactcacgtaatccagcttcTattcttctactttgtgggct	6	12	4	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	56043743	56043743	T	C	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.629	p.L210P	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	516	0	0	585	187	24.19	-	-	-	C	56043743	T	C	56043743	3	2	177	1	0	0	0	0	1	0	0	0	11254	1522	53	5	631	5	OR5T1	11	56043743	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	6069606	56043743	78962773	235	10835										
DAGLA	0	genome.wustl.edu	37	chr11	61502368	61502369	+	Frame_Shift_Del	DEL	TC	TC	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttcgcccctggagtcaccaTcgaggaagacaactgctgtg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	61502368	61502369	TC	-	DEL	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	frame_shift_del	c.1022_1023	p.I341fs	1.000:0.995	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	97	0	0	70	9	11.25	-	-	-	-	61502369	TC	-	61502368	7	5	177	1	0	1	0	1	0	0	0	0	4258	1435	50	0	1056	0	DAGLA	11	61502368	Frame_Shift_Del	DEL	TC	TCGA-A8-A07R-01A-21W-A050-09	5458625	61502368	73504148	236	10836										
TMEM223	0	genome.wustl.edu	37	chr11	62559273	62559274	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgggggccgggacacggctgINSccacagccatggaagcccag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	62559273	62559274	-	C	INS	TMEM223	ENST00000307366	human	ensembl	69_37n	-1	known	frame_shift_ins	c.194_193	p.A65fs	0.004:0.005	NULL	NULL	-	no_errors	TMEM223	HGNC	ENSG00000168569	21	0	0	19	44	69.84	-	-	-	C	62559274	-	C	62559273	7	5	177	1	0	1	1	0	0	0	0	0	16241	1319	46	0	422	0	TMEM223	11	62559273	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	1056905	62559273	72447243	237	10837	113	2								
TMEM223	0	genome.wustl.edu	37	chr11	62559276	62559276	+	Nonsense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggggccgggacacggctgccAcagccatggaagcccagaag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	62559276	62559276	A	T	SNP	TMEM223	ENST00000528367	human	ensembl	69_37n	-1	putative	nonsense	c.189	p.C63*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM223	HGNC	ENSG00000168569	17	0	0	21	46	66.67	-	-	-	T	62559276	A	T	62559276	4	4	177	1	0	0	0	0	0	1	0	0	16241	159	6	5	425	5	TMEM223	11	62559276	Nonsense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3	62559276	72447240	238	10838	113	2								
SLC3A2	0	genome.wustl.edu	37	chr11	62656079	62656079	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgctcagcacccagccaggcCgtgaggagggctcccctctt	12	16	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	62656079	62656079	C	G	SNP	SLC3A2	ENST00000377892	human	ensembl	69_37n	1	known	missense	c.1900	p.R634G	0.823	NULL	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003	36	0	0	34	47	58.02	-	-	-	G	62656079	C	G	62656079	3	3	177	1	0	0	0	0	1	0	0	0	14716	652	23	3	1953	3	SLC3A2	11	62656079	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	96803	62656079	72350437	239	10839										
PYGM	0	genome.wustl.edu	37	chr11	64518794	64518794	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gggtccctgttggcagcaccCacctttctcggccagtgaga	12	14	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	64518794	64518794	C	T	SNP	PYGM	ENST00000462303	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.804	-	-	-	no_errors	PYGM	HGNC	ENSG00000068976	108	0	0	28	23	43.4	-	-	-	T	64518794	C	T	64518794	1	4	177	0	1	0	0	0	0	0	0	0	12945	609	21	4		4	PYGM	11	64518794	RNA	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1862715	64518794	70487722	240	10840										
MAP4K2	0	genome.wustl.edu	37	chr11	64569272	64569272	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagagcagccacccagcactGtcccacctccccaaaccccc	6	22	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	64569272	64569272	G	T	SNP	MAP4K2	ENST00000493428	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAP4K2	HGNC	ENSG00000168067	61	0	0	6	4	40	-	-	-	T	64569272	G	T	64569272	1	4	177	0	1	0	0	0	0	0	0	0	9331	1392	48	4		4	MAP4K2	11	64569272	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	50478	64569272	70437244	241	10841										
CDC42BPG	0	genome.wustl.edu	37	chr11	64600123	64600123	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccactgggcgggctgagcctCaggtcaggggcgtcaaacag	16	12	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	64600123	64600123	C	G	SNP	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	silent	c.2958	p.L986	0.015	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	57	0	0	22	6	21.43	-	-	-	G	64600123	C	G	64600123	2	3	177	1	0	0	0	0	0	0	0	1	3103	813	29	2		2	CDC42BPG	11	64600123	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	30851	64600123	70406393	242	10842										
CAPN1	0	genome.wustl.edu	37	chr11	64975690	64975690	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccccaggacatggagatcagCgtgaaggagttgcggacaat	14	9	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	64975690	64975690	C	A	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.1686	p.S562R	0.286	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	110	0	0	46	42	47.73	-	-	-	A	64975690	C	A	64975690	3	1	177	1	0	0	0	0	1	0	0	0	2647	767	27	3	1744	3	CAPN1	11	64975690	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	375567	64975690	70030826	243	10843										
SPTBN2	0	genome.wustl.edu	37	chr11	66455691	66455691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgcccaccaggtcccctggaGgcacactggctgtgggttcg	14	15	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	66455691	66455691	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.6323	p.P2108H	0.695	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	120	0	0	28	35	55.56	-	-	-	T	66455691	G	T	66455691	3	4	177	1	0	0	0	0	1	0	0	0	15211	1000	35	4	877	4	SPTBN2	11	66455691	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1480001	66455691	68550825	244	10844										
PC	0	genome.wustl.edu	37	chr11	66638846	66638846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catcttgcggaccacttctgGgcttggcccaataaaccgga	10	13	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	66638846	66638846	G	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.427	p.P143T	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	64	0	0	18	3	14.29	-	-	-	T	66638846	G	T	66638846	3	4	177	1	0	0	0	0	1	0	0	0	11570	1232	43	4	3181	4	PC	11	66638846	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	183155	66638846	68367670	245	10845										
ADRBK1	0	genome.wustl.edu	37	chr11	67052502	67052502	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccgggcttccgggtggctgGccggcccggctcttacctgc	16	16	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	67052502	67052502	G	C	SNP	ADRBK1	ENST00000527176	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADRBK1	HGNC	ENSG00000173020	43	0	0	3	14	82.35	-	-	-	C	67052502	G	C	67052502	1	2	177	0	1	0	0	0	0	0	0	0	343	1218	42	4		4	ADRBK1	11	67052502	RNA	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	413656	67052502	67954014	246	10846										
PPFIA1	0	genome.wustl.edu	37	chr11	70221193	70221193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttacagatcccgacgcagaaCacacaggtgacgccaaacct	8	14	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	70221193	70221193	C	G	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	missense	c.3309	p.N1103K	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	96	0	0	58	127	68.65	-	-	-	G	70221193	C	G	70221193	3	3	177	1	0	0	0	0	1	0	0	0	12382	477	17	4	3399	4	PPFIA1	11	70221193	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3168691	70221193	64785323	247	10847										
INPPL1	0	genome.wustl.edu	37	chr11	71939469	71939469	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tacgcccagcccaaccagggCcttgtgtgcgccctgcttct	10	17	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	71939469	71939469	C	T	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	silent	c.324	p.G108	0.999	smart_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	73	0	0	69	18	20.45	-	-	-	T	71939469	C	T	71939469	2	4	177	1	0	0	0	0	0	0	0	1	7815	726	26	4		4	INPPL1	11	71939469	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1718276	71939469	63067047	248	10848										
PLEKHB1	0	genome.wustl.edu	37	chr11	73357670	73357670	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aaccatgagccctgcagcccCggtaaggaagagttctctgg	12	12	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	73357670	73357670	C	G	SNP	PLEKHB1	ENST00000354190	human	ensembl	69_37n	1	known	missense	c.17	p.P6R	0.997	NULL	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB1	HGNC	ENSG00000021300	65	0	0	39	9	18.75	-	-	-	G	73357670	C	G	73357670	3	3	177	1	0	0	0	0	1	0	0	0	12138	666	23	3	19	3	PLEKHB1	11	73357670	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1418201	73357670	61648846	249	10849										
C2CD3	0	genome.wustl.edu	37	chr11	73829409	73829409	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcttcactgaggaaatcacTgatgctggtatcagatttct	8	9	5	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	73829409	73829409	T	G	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.1384	p.S462R	0.991	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	200	0	0	309	69	18.21	-	-	-	G	73829409	T	G	73829409	3	3	177	1	0	0	0	0	1	0	0	0	2174	1580	55	5	4599	5	C2CD3	11	73829409	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	471739	73829409	61177107	250	10850										
MYO7A	0	genome.wustl.edu	37	chr11	76910582	76910582	+	Missense_Mutation	SNP	A	A	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggccttgatctccttcagggAgtgccgtgtctggctctcac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	76910582	76910582	A	G	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.4571	p.E1524G	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	30	0	0	9	4	30.77	-	-	-	G	76910582	A	G	76910582	3	3	177	1	0	0	0	0	1	0	0	0	10154	304	11	5	4739	5	MYO7A	11	76910582	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3081173	76910582	58095934	251	10851	114	2								
MYO7A	0	genome.wustl.edu	37	chr11	76910588	76910588	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gatctccttcagggagtgccGtgtctggctctcactgggct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	76910588	76910588	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.4577	p.R1526H	0.986	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	33	0	0	10	4	28.57	-	-	-	A	76910588	G	A	76910588	3	1	177	1	0	0	0	0	1	0	0	0	10154	1145	40	1	4745	1	MYO7A	11	76910588	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6	76910588	58095928	252	10852	114	2								
ODZ4	0	genome.wustl.edu	37	chr11	78380642	78380642	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atccatcttgtattgcacgtCacccagccgagtgatgcggt	10	12	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	78380642	78380642	C	A	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.6748	p.D2250Y	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	225	0	0	68	98	59.04	-	-	-	A	78380642	C	A	78380642	3	1	177	1	0	0	0	0	1	0	0	0	10910	826	29	2	1573	2	ODZ4	11	78380642	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1470054	78380642	56625874	253	10853										
SYTL2	0	genome.wustl.edu	37	chr11	85445156	85445156	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtcattggctgatgtgtttCactttttgatacatatgggc	10	6	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	85445156	85445156	C	T	SNP	SYTL2	ENST00000316356	human	ensembl	69_37n	-1	known	missense	c.1216	p.E406K	0.058	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL2	HGNC	ENSG00000137501	398	2	0.5	590	69	10.47	-	-	-	T	85445156	C	T	85445156	3	4	177	1	0	0	0	0	1	0	0	0	15575	835	29	2	4124	2	SYTL2	11	85445156	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	7064514	85445156	49561360	254	10854										
MCAM	0	genome.wustl.edu	37	chr11	119183561	119183561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttgagctcacagtaaaactGggcatctttgtcttctttaa	8	8	4	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	119183561	119183561	G	C	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	missense	c.658	p.Q220E	0.986	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	149	0	0	40	26	39.39	-	-	-	C	119183561	G	C	119183561	3	2	177	1	0	0	0	0	1	0	0	0	9439	1357	47	4	1326	4	MCAM	11	119183561	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	33738405	119183561	15822955	255	10855										
FOXRED1	0	genome.wustl.edu	37	chr11	126145245	126145245	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggaggacgaaggttggtttGacccctggtgtctgctccag	15	9	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	126145245	126145245	G	C	SNP	FOXRED1	ENST00000263578	human	ensembl	69_37n	1	known	missense	c.655	p.D219H	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074	297	0	0	127	15	10.56	-	-	-	C	126145245	G	C	126145245	3	2	177	1	0	0	0	0	1	0	0	0	6081	1290	45	2	677	2	FOXRED1	11	126145245	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6961684	126145245	8861271	256	10856										
TIRAP	0	genome.wustl.edu	37	chr11	126161294	126161294	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtcccatactccaaacacagAcctgagcagtgtttctcccc	6	16	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	126161294	126161294	A	G	SNP	TIRAP	ENST00000462401	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIRAP	HGNC	ENSG00000150455	17	0	0	10	11	52.38	-	-	-	G	126161294	A	G	126161294	1	3	177	0	1	0	0	0	0	0	0	0	16022	290	10	5		5	TIRAP	11	126161294	RNA	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	16049	126161294	8845222	257	10857										
GLB1L3	0	genome.wustl.edu	37	chr11	134181008	134181008	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcccaaggctgtgtatcccCccgtgagaccgtcgctgtac	10	16	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	11	134181008	134181008	C	G	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.1231	p.P411A	0.000	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	162	0	0	82	13	13.68	-	-	-	G	134181008	C	G	134181008	3	3	177	1	0	0	0	0	1	0	0	0	6482	623	22	4	1281	4	GLB1L3	11	134181008	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	8019714	134181008	825508	258	10858										
CACNA1C	0	genome.wustl.edu	37	chr12	2774053	2774053	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catgccaggcaagaagtgtgCcccagagtccgagcccagca	12	14	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	2774053	2774053	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.4295	p.A1432V	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_L_a1csu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	79	0	0	74	23	23.71	-	-	-	T	2774053	C	T	2774053	3	4	177	1	0	0	0	0	1	0	0	0	2565	739	26	4	4759	4	CACNA1C	12	2774053	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		2774053	131077842	259	10859										
CHD4	0	genome.wustl.edu	37	chr12	6707089	6707089	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggattcggtggatcatcatCcactcgggttttatcccata	9	10	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	6707089	6707089	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	nonsense	c.1863	p.W621*	1.000	superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	87	0	0	85	143	62.72	-	-	-	T	6707089	C	T	6707089	4	4	177	1	0	0	0	0	0	1	0	0	3356	856	30	2	3991	2	CHD4	12	6707089	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3933036	6707089	127144806	260	10860										
LRP6	0	genome.wustl.edu	37	chr12	12334290	12334290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acggatgtcttctaactgcaGaacaatgtctgtaaaatctg	8	8	4	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	12334290	12334290	G	A	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	silent	c.1060	p.L354	0.974	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	120	0	0	140	59	29.65	-	-	-	A	12334290	G	A	12334290	2	1	177	1	0	0	0	0	0	0	0	1	9028	933	33	2		2	LRP6	12	12334290	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5627201	12334290	121517605	261	10861										
ALG10B	0	genome.wustl.edu	37	chr12	38714741	38714741	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctatatatttgctggttggaGtatagctgactcattgaaat	9	5	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	38714741	38714741	G	C	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	1	known	missense	c.1148	p.S383T	0.986	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	329	0	0	134	73	35.27	-	-	-	C	38714741	G	C	38714741	3	2	177	1	0	0	0	0	1	0	0	0	512	1029	36	4	1158	4	ALG10B	12	38714741	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	26380451	38714741	95137154	262	10862										
ADAMTS20	0	genome.wustl.edu	37	chr12	43945717	43945717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcccagtcagccacttggccAcccacatggttccaccctgg	9	18	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	43945717	43945717	A	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.8	p.V3A	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	38	0	0	21	10	32.26	-	-	-	G	43945717	A	G	43945717	3	3	177	1	0	0	0	0	1	0	0	0	266	159	6	5	5879	5	ADAMTS20	12	43945717	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	5230976	43945717	89906178	263	10863										
IRAK4	0	genome.wustl.edu	37	chr12	44176156	44176156	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttactgctaaaatatctgacTttggccttgcacgggcttct	8	10	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	44176156	44176156	T	G	SNP	IRAK4	ENST00000448290	human	ensembl	69_37n	1	known	missense	c.988	p.F330V	1.000	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001	183	0	0	128	95	42.6	-	-	-	G	44176156	T	G	44176156	3	3	177	1	0	0	0	0	1	0	0	0	7879	1609	56	5	1018	5	IRAK4	12	44176156	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	230439	44176156	89675739	264	10864										
MLL2	0	genome.wustl.edu	37	chr12	49420223	49420223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccccccacacggaacatgtGcagccgttctccccgctgaa	9	18	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	49420223	49420223	G	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.15526	p.H5176N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	58	0	0	26	8	22.86	-	-	-	T	49420223	G	T	49420223	3	4	177	1	0	0	0	0	1	0	0	0	9692	1319	46	4	1115	4	MLL2	12	49420223	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5244067	49420223	84431672	265	10865										
LEMD3	0	genome.wustl.edu	37	chr12	65563384	65563385	+	Frame_Shift_Ins	INS	-	-	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctggagagaaaatggcggcINSggcagcagcttcggcgcctc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	65563384	65563385	-	T	INS	LEMD3	ENST00000308330	human	ensembl	69_37n	1	known	frame_shift_ins	c.8_9	p.A4fs	1.000:0.999	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM	-	no_errors	LEMD3	HGNC	ENSG00000174106	12	0	0	5	4	44.44	-	-	-	T	65563385	-	T	65563384	7	5	177	1	0	1	1	0	0	0	0	0	8775	768	27	0	10	0	LEMD3	12	65563384	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	16143161	65563384	68288511	266	10866										
MSRB3	0	genome.wustl.edu	37	chr12	65720647	65720647	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	actgtaaggtggtcttttccCagcaggaactgaggaagcgg	14	8	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	65720647	65720647	C	A	SNP	MSRB3	ENST00000355192	human	ensembl	69_37n	1	known	missense	c.139	p.Q47K	1.000	superfamily_Mss4-like,tigrfam_Methionine_sulphoxide_MsrB	pfam_Methionine_sulphoxide_MsrB,superfamily_Mss4-like,tigrfam_Methionine_sulphoxide_MsrB	-	no_errors	MSRB3	HGNC	ENSG00000174099	162	1	0.61	152	41	21.24	-	-	-	A	65720647	C	A	65720647	3	1	177	1	0	0	0	0	1	0	0	0	9961	595	21	4	225	4	MSRB3	12	65720647	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	157263	65720647	68131248	267	10867										
CPSF6	0	genome.wustl.edu	37	chr12	69646886	69646886	+	Frame_Shift_Del	DEL	T	T	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttctttgggagtaaatgataTtttggagataaaattttttg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	69646886	69646886	T	-	DEL	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	frame_shift_del	c.326	p.L110fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	211	0	0	279	74	20.9	-	-	-	-	69646886	T	-	69646886	7	5	177	1	0	1	0	1	0	0	0	0	3859	1493	52	0	336	0	CPSF6	12	69646886	Frame_Shift_Del	DEL	T	TCGA-A8-A07R-01A-21W-A050-09	3926239	69646886	64205009	268	10868										
CRY1	0	genome.wustl.edu	37	chr12	107391414	107391414	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggataccttctggtgcattCcagggatcatagatatattt	9	7	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	107391414	107391414	C	A	SNP	CRY1	ENST00000008527	human	ensembl	69_37n	-1	known	missense	c.1344	p.W448C	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405	264	0	0	258	46	15.13	-	-	-	A	107391414	C	A	107391414	3	1	177	1	0	0	0	0	1	0	0	0	3933	856	30	2	432	2	CRY1	12	107391414	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	37744528	107391414	26460481	269	10869										
NOS1	0	genome.wustl.edu	37	chr12	117681129	117681129	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagttctggagcttcggccaCaaaggtgaggcggaacttgt	15	8	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	117681129	117681129	C	G	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.2935	p.V979L	1.000	superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	398	0	0	1058	392	27.02	-	-	-	G	117681129	C	G	117681129	3	3	177	1	0	0	0	0	1	0	0	0	10613	478	17	4	1413	4	NOS1	12	117681129	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	10289715	117681129	16170766	270	10870										
TCTN2	0	genome.wustl.edu	37	chr12	124189164	124189164	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	attcctgctcacctgagcatCcgcatcctcatctcggatgc	7	16	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	124189164	124189164	C	T	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	silent	c.1698	p.I566	0.999	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	79	0	0	70	40	36.36	-	-	-	T	124189164	C	T	124189164	2	4	177	1	0	0	0	0	0	0	0	1	15818	845	30	2		2	TCTN2	12	124189164	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	6508035	124189164	9662731	271	10871										
DNAH10	0	genome.wustl.edu	37	chr12	124320025	124320025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtggagatataagatcacaaCttccggaagaggcaaaaaag	11	6	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	12	124320025	124320025	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.4498	p.L1500F	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	384	0	0	202	102	33.55	-	-	-	T	124320025	C	T	124320025	3	4	177	1	0	0	0	0	1	0	0	0	4634	565	20	4	4604	4	DNAH10	12	124320025	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	130861	124320025	9531870	272	10872										
SKA3	0	genome.wustl.edu	37	chr13	21729839	21729839	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtaacatactcaccagttttCtttgttgctgacatctcgga	7	10	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	21729839	21729839	C	G	SNP	SKA3	ENST00000314759	human	ensembl	69_37n	-1	known	missense	c.1231	p.E411Q	1.000	NULL	NULL	-	no_errors	SKA3	HGNC	ENSG00000165480	458	0	0	148	61	29.05	-	-	-	G	21729839	C	G	21729839	3	3	177	1	0	0	0	0	1	0	0	0	14443	922	32	2	62	2	SKA3	13	21729839	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		21729839	93440039	273	10873										
SGCG	0	genome.wustl.edu	37	chr13	23898666	23898666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccacgtgccaggagcacaacCacatctgcctctgagctgcc	9	17	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	23898666	23898666	C	T	SNP	SGCG	ENST00000218867	human	ensembl	69_37n	1	known	missense	c.862	p.H288Y	0.239	NULL	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683	64	0	0	34	7	17.07	-	-	-	T	23898666	C	T	23898666	3	4	177	1	0	0	0	0	1	0	0	0	14291	594	21	4	888	4	SGCG	13	23898666	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2168827	23898666	91271212	274	10874										
CDX2	0	genome.wustl.edu	37	chr13	28537277	28537278	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtgacggtggggtttagcaINScccccccagttggccccaga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	28537277	28537278	-	C	INS	CDX2	ENST00000381020	human	ensembl	69_37n	-1	known	frame_shift_ins	c.917_916	p.V306fs	0.999:0.992	NULL	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX2	HGNC	ENSG00000165556	95	0	0	20	3	13.04	-	-	-	C	28537278	-	C	28537277	7	5	177	1	0	1	1	0	0	0	0	0	3212	159	6	0	28	0	CDX2	13	28537277	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	4638611	28537277	86632601	275	10875										
USPL1	0	genome.wustl.edu	37	chr13	31232435	31232435	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcaaaccacaacatctaagTcattacagaatcagtctctg	4	12	5	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	31232435	31232435	T	C	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.2221	p.S741P	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	111	0	0	64	16	20	-	-	-	C	31232435	T	C	31232435	3	2	177	1	0	0	0	0	1	0	0	0	17189	1667	58	5	2251	5	USPL1	13	31232435	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2695158	31232435	83937443	276	10876										
LIG4	0	genome.wustl.edu	37	chr13	108862659	108862659	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acagatttgtatatctgcttTgaatgcattatgaatgaatg	8	4	1	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	108862659	108862659	T	A	SNP	LIG4	ENST00000356922	human	ensembl	69_37n	-1	known	nonsense	c.958	p.K320*	0.021	pfam_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405	171	0	0	105	18	14.63	-	-	-	A	108862659	T	A	108862659	4	1	177	1	0	0	0	0	0	1	0	0	8838	1821	63	5	1781	5	LIG4	13	108862659	Nonsense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	77630224	108862659	6307219	277	10877										
MYO16	0	genome.wustl.edu	37	chr13	109617177	109617177	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagacctcttggccaagtccCtgtacagtcgtttgtttagc	10	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	13	109617177	109617177	C	A	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.2230	p.L744M	0.294	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	402	0	0	508	106	17.26	-	-	-	A	109617177	C	A	109617177	3	1	177	1	0	0	0	0	1	0	0	0	10136	680	24	4	2304	4	MYO16	13	109617177	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	754518	109617177	5552701	278	10878										
MYH6	0	genome.wustl.edu	37	chr14	23857373	23857373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccatggtccaccttgtcaaaGtttctctgcttcttgtccag	7	13	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	23857373	23857373	G	C	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.4350	p.N1450K	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	117	0	0	45	20	30.77	-	-	-	C	23857373	G	C	23857373	3	2	177	1	0	0	0	0	1	0	0	0	10110	1020	36	4	1509	4	MYH6	14	23857373	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		23857373	83492167	279	10879										
RIPK3	0	genome.wustl.edu	37	chr14	24806313	24806313	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgattccctcggggtccaggActtggtgttccagttgaggt	14	9	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	24806313	24806313	A	T	SNP	RIPK3	ENST00000216274	human	ensembl	69_37n	-1	known	missense	c.1254	p.S418R	0.013	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK3	HGNC	ENSG00000129465	379	0	0	293	50	14.53	-	-	-	T	24806313	A	T	24806313	3	4	177	1	0	0	0	0	1	0	0	0	13468	272	10	5	314	5	RIPK3	14	24806313	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	948940	24806313	82543227	280	10880										
PSMA6	0	genome.wustl.edu	37	chr14	35778201	35778201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtgatgaccggaatgacaGgtaattaatctgtagatata	11	4	1	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	35778201	35778201	G	T	SNP	PSMA6	ENST00000261479	human	ensembl	69_37n	1	known	missense	c.253	p.A85S	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902	184	0	0	184	46	20	-	-	-	T	35778201	G	T	35778201	3	4	177	1	0	0	0	0	1	0	0	0	12751	1014	35	4	263	4	PSMA6	14	35778201	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	10971888	35778201	71571339	281	10881										
SYNE2	0	genome.wustl.edu	37	chr14	64600895	64600895	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aagaaacagaggaaagattaGtggaaaggatttcattttac	10	3	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	64600895	64600895	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.14623	p.V4875L	0.031	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	372	0	0	102	262	71.98	-	-	-	C	64600895	G	C	64600895	3	2	177	1	0	0	0	0	1	0	0	0	15538	1029	36	4	14929	4	SYNE2	14	64600895	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	28822694	64600895	42748645	282	10882										
DCAF5	0	genome.wustl.edu	37	chr14	69520743	69520743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgggggtctcacaggccattTcagacccgcaacaatctttg	10	12	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	69520743	69520743	T	C	SNP	DCAF5	ENST00000341516	human	ensembl	69_37n	-1	known	missense	c.2660	p.E887G	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	228	0	0	146	30	16.95	-	-	-	C	69520743	T	C	69520743	3	2	177	1	0	0	0	0	1	0	0	0	4305	1783	62	5	172	5	DCAF5	14	69520743	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	4919848	69520743	37828797	283	10883										
SMOC1	0	genome.wustl.edu	37	chr14	70477539	70477539	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccagcagaatccccgtgagGgtattgtcatccctgaatgt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	70477539	70477539	G	A	SNP	SMOC1	ENST00000361956	human	ensembl	69_37n	1	known	missense	c.733	p.G245S	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732	86	0	0	44	8	15.38	-	-	-	A	70477539	G	A	70477539	3	1	177	1	0	0	0	0	1	0	0	0	14890	1232	43	4	763	4	SMOC1	14	70477539	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	956796	70477539	36872001	284	10884	115	2								
SMOC1	0	genome.wustl.edu	37	chr14	70477540	70477540	+	Missense_Mutation	SNP	G	G	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccagcagaatccccgtgaggGtattgtcatccctgaatgtg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	70477540	70477540	G	T	SNP	SMOC1	ENST00000361956	human	ensembl	69_37n	1	known	missense	c.734	p.G245V	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732	84	0	0	42	10	19.23	-	-	-	T	70477540	G	T	70477540	3	4	177	1	0	0	0	0	1	0	0	0	14890	1261	44	4	764	4	SMOC1	14	70477540	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1	70477540	36872000	285	10885	115	2								
ASB2	0	genome.wustl.edu	37	chr14	94413838	94413838	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcgtagagggcagacgcgttGtcgctggcctgcgtgttgat	16	9	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	94413838	94413838	G	C	SNP	ASB2	ENST00000315988	human	ensembl	69_37n	-1	known	missense	c.765	p.D255E	0.977	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628	233	0	0	192	40	17.24	-	-	-	C	94413838	G	C	94413838	3	2	177	1	0	0	0	0	1	0	0	0	1027	1368	48	4	1014	4	ASB2	14	94413838	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	23936298	94413838	12935702	286	10886										
AHNAK2	0	genome.wustl.edu	37	chr14	105409543	105409543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgtcacttccgccttggggCctttcaggtccagcttgggg	13	13	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	105409543	105409543	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.12245	p.G4082D	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	333	0	0	72	10	12.05	-	-	-	T	105409543	C	T	105409543	3	4	177	1	0	0	0	0	1	0	0	0	415	739	26	4	5146	4	AHNAK2	14	105409543	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	10995705	105409543	1939997	287	10887			2	24		5	3	625	N	T_G_C_-	2.990981e-05
AHNAK2	0	genome.wustl.edu	37	chr14	105410061	105410061	+	Silent	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttaggtccagcttggggccCttgatgtctatttcagggcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	105410061	105410061	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.11727	p.K3909	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	403	0	0	136	39	22.29	-	-	-	T	105410061	C	T	105410061	2	4	177	1	0	0	0	0	0	0	0	1	415	680	24	4		4	AHNAK2	14	105410061	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	518	105410061	1939479	288	10888	116	3	2	24		5	3	625	N	T_G_C_-	2.990981e-05
AHNAK2	0	genome.wustl.edu	37	chr14	105410064	105410064	+	Missense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aggtccagcttggggcccttGatgtctatttcagggccctt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	105410064	105410064	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.11724	p.I3908M	0.003	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	391	0	0	127	33	19.76	-	-	-	C	105410064	G	C	105410064	3	2	177	1	0	0	0	0	1	0	0	0	415	1280	45	2	5667	2	AHNAK2	14	105410064	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3	105410064	1939476	289	10889	116	3	2	24		5	3	625	N	T_G_C_-	2.990981e-05
AHNAK2	0	genome.wustl.edu	37	chr14	105410066	105410066	+	Missense_Mutation	SNP	T	T	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtccagcttggggcccttgaTgtctatttcagggcccttga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	105410066	105410066	T	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.11722	p.I3908L	0.043	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	391	0	0	125	32	19.51	-	-	-	G	105410066	T	G	105410066	3	3	177	1	0	0	0	0	1	0	0	0	415	1464	51	5	5669	5	AHNAK2	14	105410066	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2	105410066	1939474	290	10890	116	3	2	24		5	3	625	N	T_G_C_-	2.990981e-05
AHNAK2	0	genome.wustl.edu	37	chr14	105410167	105410168	+	Frame_Shift_Ins	INS	-	-	GG													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggcttcctcgggcacgtggcINScctccaggagtttcatgtcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	14	105410167	105410168	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11621_11620	p.G3874fs	0.000:0.002	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	260	0	0	40	17	29.82	-	-	-	GG	105410168	-	GG	105410167	7	5	177	1	0	1	1	0	0	0	0	0	415	739	26	0	5770	0	AHNAK2	14	105410167	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	101	105410167	1939373	291	10891			2	24		5	3	625	N	T_G_C_-	2.990981e-05
CYFIP1	0	genome.wustl.edu	37	chr15	22929811	22929811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agcctacctgatcacactggGcaaattcatcaacatgttcg	7	12	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	22929811	22929811	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	missense	c.485	p.G162D	1.000	pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	105	0	0	16	3	15.79	-	-	-	A	22929811	G	A	22929811	3	1	177	1	0	0	0	0	1	0	0	0	4168	1203	42	4	503	4	CYFIP1	15	22929811	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		22929811	79601581	292	10892										
RYR3	0	genome.wustl.edu	37	chr15	33990151	33990151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtcctgggcatgcacgagaCggtgatggaggtgatggtga	18	6	0	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	33990151	33990151	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.6203	p.T2068M	1.000	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	501	0	0	118	354	75	-	-	-	T	33990151	C	T	33990151	3	4	177	1	0	0	0	0	1	0	0	0	13856	536	19	1	6361	1	RYR3	15	33990151	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11060340	33990151	68541241	293	10893										
PAK6	0	genome.wustl.edu	37	chr15	40564516	40564516	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcggaccagccggtggggaCcttcagccctctgaccactt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	40564516	40564516	C	T	SNP	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	missense	c.950	p.T317I	0.969	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	123	0	0	27	24	47.06	-	-	-	T	40564516	C	T	40564516	3	4	177	1	0	0	0	0	1	0	0	0	11477	507	18	4	960	4	PAK6	15	40564516	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	6574365	40564516	61966876	294	10894	117	2								
PAK6	0	genome.wustl.edu	37	chr15	40564521	40564521	+	Missense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	accagccggtggggaccttcAgccctctgaccacttcggat							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	40564521	40564521	A	T	SNP	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	missense	c.955	p.S319C	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	124	0	0	25	21	45.65	-	-	-	T	40564521	A	T	40564521	3	4	177	1	0	0	0	0	1	0	0	0	11477	188	7	5	965	5	PAK6	15	40564521	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	5	40564521	61966871	295	10895	117	2								
MYO5C	0	genome.wustl.edu	37	chr15	52497266	52497266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agccgtccgtgtcgtctatgCtagaggagcgcttccggaag	14	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	52497266	52497266	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	missense	c.4616	p.S1539N	1.000	pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	62	0	0	48	11	18.64	-	-	-	T	52497266	C	T	52497266	3	4	177	1	0	0	0	0	1	0	0	0	10152	797	28	4	628	4	MYO5C	15	52497266	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11932745	52497266	50034126	296	10896										
ALDH1A2	0	genome.wustl.edu	37	chr15	58357803	58357803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgacgccatgagggcggcggGgtcggccttcacctcgccgg	17	15	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	58357803	58357803	G	T	SNP	ALDH1A2	ENST00000249750	human	ensembl	69_37n	-1	known	missense	c.46	p.P16T	1.000	NULL	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918	43	0	0	13	12	48	-	-	-	T	58357803	G	T	58357803	3	4	177	1	0	0	0	0	1	0	0	0	491	1232	43	4	1562	4	ALDH1A2	15	58357803	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	5860537	58357803	44173589	297	10897										
IQCH	0	genome.wustl.edu	37	chr15	67555536	67555536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taatgatgagagcttatataCtccccaggcttccaaatggt	8	9	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	67555536	67555536	C	T	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	1	known	missense	c.251	p.T84I	0.003	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	145	0	0	31	28	47.46	-	-	-	T	67555536	C	T	67555536	3	4	177	1	0	0	0	0	1	0	0	0	7865	565	20	4	261	4	IQCH	15	67555536	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	9197733	67555536	34975856	298	10898										
PAQR5	0	genome.wustl.edu	37	chr15	69652466	69652466	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtttagcatagaccagatacCccaggtatgtgctctattga	9	9	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	69652466	69652466	C	G	SNP	PAQR5	ENST00000340965	human	ensembl	69_37n	1	known	missense	c.47	p.P16R	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR5	HGNC	ENSG00000137819	164	0	0	74	56	43.08	-	-	-	G	69652466	C	G	69652466	3	3	177	1	0	0	0	0	1	0	0	0	11511	623	22	4	49	4	PAQR5	15	69652466	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2096930	69652466	32878926	299	10899										
CPEB1	0	genome.wustl.edu	37	chr15	83215973	83215974	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctccgttggttattgaaagtINScacacgaccagaacctagga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	83215973	83215974	-	C	INS	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1429_1428	p.T476fs	1.000:1.000	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	137	0	0	190	23	10.8	-	-	-	C	83215974	-	C	83215973	7	5	177	1	0	1	1	0	0	0	0	0	3830	1667	58	0	283	0	CPEB1	15	83215973	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	13563507	83215973	19315419	300	10900										
LRRC28	0	genome.wustl.edu	37	chr15	99874329	99874329	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aaaccgtcttgcatttttgcCacttggtaagtgattgtgtt	9	7	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	15	99874329	99874329	C	G	SNP	LRRC28	ENST00000301981	human	ensembl	69_37n	1	known	missense	c.587	p.P196R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	223	0	0	343	45	11.6	-	-	-	G	99874329	C	G	99874329	3	3	177	1	0	0	0	0	1	0	0	0	9048	594	21	4	605	4	LRRC28	15	99874329	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	16658356	99874329	2657063	301	10901										
ABCA3	0	genome.wustl.edu	37	chr16	2347904	2347904	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacttcttcagggcacttctGacgtgacaggcccttcagct	10	13	4	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	2347904	2347904	G	C	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.1915	p.Q639E	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	61	0	0	12	5	29.41	-	-	-	C	2347904	G	C	2347904	3	2	177	1	0	0	0	0	1	0	0	0	33	1299	45	2	3271	2	ABCA3	16	2347904	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		2347904	88006849	302	10902										
MEFV	0	genome.wustl.edu	37	chr16	3293337	3293337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtccacgaagatgcccacaCgcttgggaggctcctttatt	10	12	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	3293337	3293337	C	T	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.2150	p.R717H	0.028	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	198	1	0.5	60	57	48.72	-	-	-	T	3293337	C	T	3293337	3	4	177	1	0	0	0	0	1	0	0	0	9530	536	19	1	199	1	MEFV	16	3293337	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	945433	3293337	87061416	303	10903										
ADCY9	0	genome.wustl.edu	37	chr16	4164945	4164945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgcgtaatgccgggcgtacaGcttggtgaaggtaaacagaa	14	8	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	4164945	4164945	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	silent	c.499	p.L167	0.874	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	77	0	0	20	7	25.93	-	-	-	A	4164945	G	A	4164945	2	1	177	1	0	0	0	0	0	0	0	1	301	962	34	4		4	ADCY9	16	4164945	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	871608	4164945	86189808	304	10904										
MGRN1	0	genome.wustl.edu	37	chr16	4723519	4723519	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccctcggacgacgagaacagCgacaacagcaacgagtgtgt	12	12	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	4723519	4723519	C	G	SNP	MGRN1	ENST00000262370	human	ensembl	69_37n	1	known	missense	c.816	p.S272R	0.988	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MGRN1	HGNC	ENSG00000102858	66	0	0	31	21	40.38	-	-	-	G	4723519	C	G	4723519	3	3	177	1	0	0	0	0	1	0	0	0	9630	767	27	3	857	3	MGRN1	16	4723519	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	558574	4723519	85631234	305	10905										
ROGDI	0	genome.wustl.edu	37	chr16	4848160	4848160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agacgttgaccagcaggtcgGacggcagggcaggggcgaac	18	10	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	4848160	4848160	G	T	SNP	ROGDI	ENST00000322048	human	ensembl	69_37n	-1	known	missense	c.557	p.S186Y	0.044	NULL	NULL	-	no_errors	ROGDI	HGNC	ENSG00000067836	67	0	0	14	16	53.33	-	-	-	T	4848160	G	T	4848160	3	4	177	1	0	0	0	0	1	0	0	0	13606	1174	41	2	322	2	ROGDI	16	4848160	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	124641	4848160	85506593	306	10906										
ACSM1	0	genome.wustl.edu	37	chr16	20648499	20648499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgtgatgccctggctgccaGggtcagcggtgttcatgctc	15	11	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	20648499	20648499	G	C	SNP	ACSM1	ENST00000219151	human	ensembl	69_37n	-1	known	missense	c.113	p.P38R	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743	18	0	0	37	24	39.34	-	-	-	C	20648499	G	C	20648499	3	2	177	1	0	0	0	0	1	0	0	0	182	1015	35	4		4	ACSM1	16	20648499	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	15800339	20648499	69706254	307	10907										
IL4R	0	genome.wustl.edu	37	chr16	27373644	27373644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catgaaaagggatgaagatcCtcacaaggctgccaaagaga	11	8	1	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	27373644	27373644	C	A	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.971	p.P324H	0.000	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	182	0	0	102	79	43.17	-	-	-	A	27373644	C	A	27373644	3	1	177	1	0	0	0	0	1	0	0	0	7752	681	24	4	1023	4	IL4R	16	27373644	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	6725145	27373644	62981109	308	10908										
ASPHD1	0	genome.wustl.edu	37	chr16	29913171	29913171	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcggcaatgccggcttttcCgttctcctgcctggggcccg	12	15	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	29913171	29913171	C	T	SNP	ASPHD1	ENST00000308748	human	ensembl	69_37n	1	known	silent	c.879	p.S293	0.207	pfam_Asp_Arg_b-Hydrxlase	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD1	HGNC	ENSG00000174939	9	0	0	12	9	42.86	-	-	-	T	29913171	C	T	29913171	2	4	177	1	0	0	0	0	0	0	0	1	1058	639	23	1		1	ASPHD1	16	29913171	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2539527	29913171	60441582	309	10909										
TBC1D10B	0	genome.wustl.edu	37	chr16	30380863	30380863	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaggggcctgtgccagggccTgaggggtcctcaggagcctg	19	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	30380863	30380863	T	G	SNP	TBC1D10B	ENST00000409939	human	ensembl	69_37n	-1	known	silent	c.642	p.S214	0.001	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	20	0	0	16	552	97.01	-	-	-	G	30380863	T	G	30380863	2	3	177	1	0	0	0	0	0	0	0	1	15691	1567	55	5		5	TBC1D10B	16	30380863	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	467692	30380863	59973890	310	10910										
ZNF646	0	genome.wustl.edu	37	chr16	31089275	31089275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcccgcctgacccagtggagGcagaggcagccccgcacaca	12	17	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	31089275	31089275	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.1630	p.A544T	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	101	0	0	9	12	57.14	-	-	-	A	31089275	G	A	31089275	3	1	177	1	0	0	0	0	1	0	0	0	18158	1203	42	4	1632	4	ZNF646	16	31089275	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	708412	31089275	59265478	311	10911										
ZNF423	0	genome.wustl.edu	37	chr16	49764856	49764856	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgcacggctggttttctgatCgcactctggctctccttcta	9	14	4	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	49764856	49764856	C	G	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.103	p.D35H	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	314	0	0	222	43	16.17	-	-	-	G	49764856	C	G	49764856	3	3	177	1	0	0	0	0	1	0	0	0	17994	884	31	3	3775	3	ZNF423	16	49764856	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	18675581	49764856	40589897	312	10912										
SNX20	0	genome.wustl.edu	37	chr16	50707855	50707855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggtgcttcctgggaaactccAcgtcttcgatctcctccctg	9	15	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	50707855	50707855	A	G	SNP	SNX20	ENST00000330943	human	ensembl	69_37n	-1	known	missense	c.413	p.V138A	0.462	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208	48	0	0	14	4	22.22	-	-	-	G	50707855	A	G	50707855	3	3	177	1	0	0	0	0	1	0	0	0	14981	159	6	5	684	5	SNX20	16	50707855	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	942999	50707855	39646898	313	10913										
MT1H	0	genome.wustl.edu	37	chr16	56704477	56704477	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agtgcaaatgcacctcctgcAagaagagtgagtgcggggcc	14	10	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	56704477	56704477	A	G	SNP	MT1H	ENST00000332374	human	ensembl	69_37n	1	known	missense	c.88	p.K30E	1.000	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1H	HGNC	ENSG00000205358	191	0	0	66	27	29.03	-	-	-	G	56704477	A	G	56704477	3	3	177	1	0	0	0	0	1	0	0	0	9974	131	5	5	94	5	MT1H	16	56704477	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	5996622	56704477	33650276	314	10914										
DYNC1LI2	0	genome.wustl.edu	37	chr16	66766325	66766325	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaacaatatacttatacaaCaagtcgaggtttttctcttc	5	8	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	66766325	66766325	C	G	SNP	DYNC1LI2	ENST00000258198	human	ensembl	69_37n	-1	known	missense	c.846	p.L282F	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720	254	0	0	121	79	39.5	-	-	-	G	66766325	C	G	66766325	3	3	177	1	0	0	0	0	1	0	0	0	4880	477	17	4	660	4	DYNC1LI2	16	66766325	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	10061848	66766325	23588428	315	10915										
CDH16	0	genome.wustl.edu	37	chr16	66945978	66945978	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gggcctgggcctggccccacCagcttcgccacactctgcac	11	19	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	66945978	66945978	C	A	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	silent	c.1614	p.L538	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	83	0	0	28	9	24.32	-	-	-	A	66945978	C	A	66945978	2	1	177	1	0	0	0	0	0	0	0	1	3130	581	21	4		4	CDH16	16	66945978	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	179653	66945978	23408775	316	10916										
PLA2G15	0	genome.wustl.edu	37	chr16	68293388	68293388	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccgtgaccctaaaatctgctTtggtgacggcgatggtactg	12	10	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	68293388	68293388	T	G	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	1	known	missense	c.1067	p.F356C	0.999	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	53	0	0	22	14	38.89	-	-	-	G	68293388	T	G	68293388	3	3	177	1	0	0	0	0	1	0	0	0	12066	1841	64	5	1089	5	PLA2G15	16	68293388	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1347410	68293388	22061365	317	10917										
COG8	0	genome.wustl.edu	37	chr16	69368617	69368617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagcaggcatgttactggtgCccaggatggctggagccgag	16	10	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	69368617	69368617	C	T	SNP	COG8	ENST00000306875	human	ensembl	69_37n	-1	known	missense	c.1220	p.G407D	1.000	pirsf_COG_su8	pfam_Dor1,superfamily_Cullin_repeat-like_dom,pirsf_COG_su8	-	no_errors	COG8	HGNC	ENSG00000213380	112	0	0	85	23	21.3	-	-	-	T	69368617	C	T	69368617	3	4	177	1	0	0	0	0	1	0	0	0	3694	739	26	4	630	4	COG8	16	69368617	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1075229	69368617	20986136	318	10918										
TMED6	0	genome.wustl.edu	37	chr16	69381693	69381693	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cacaaaacacttccttacctCaattgcatccagagtatcat	3	13	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	16	69381693	69381693	C	A	SNP	TMED6	ENST00000288025	human	ensembl	69_37n	-1	known	nonsense	c.487	p.E163*	0.993	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED6	HGNC	ENSG00000157315	459	0	0	108	394	78.49	-	-	-	A	69381693	C	A	69381693	4	1	177	1	0	0	0	0	0	1	0	0	16103	835	29	2	243	2	TMED6	16	69381693	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	13076	69381693	20973060	319	10919										
ZZEF1	0	genome.wustl.edu	37	chr17	3980278	3980278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catgcttgccagaaactggcCcacatctaccgaaacaaaga	7	13	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	3980278	3980278	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.2995	p.G999S	0.761	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	117	0	0	104	119	53.36	-	-	-	T	3980278	C	T	3980278	3	4	177	1	0	0	0	0	1	0	0	0	18346	623	22	4	6034	4	ZZEF1	17	3980278	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		3980278	77214932	320	10920										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	96	0	0	53	143	72.59	-	-	-	A	7577539	G	A	7577539	3	1	177	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3597261	7577539	73617671	321	10921										
PIK3R6	0	genome.wustl.edu	37	chr17	8741904	8741904	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctccagttctctgagaagaaTgcggaccagcactgggctct	11	12	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	8741904	8741904	T	A	SNP	PIK3R6	ENST00000311434	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	PIK3R6	HGNC	ENSG00000174083	107	0	0	97	60	37.97	-	-	-	A	8741904	T	A	8741904	1	1	177	0	1	0	0	0	0	0	0	0	11997	1464	51	5		5	PIK3R6	17	8741904	RNA	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1164365	8741904	72453306	322	10922										
USP43	0	genome.wustl.edu	37	chr17	9631430	9631431	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccaggtgcctccgtcgagttINSggtggagtacttggaatcca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	9631430	9631431	-	G	INS	USP43	ENST00000285199	human	ensembl	69_37n	1	known	frame_shift_ins	c.2495_2496	p.V833fs	1.000:1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	68	0	0	42	13	23.64	-	-	-	G	9631431	-	G	9631430	7	5	177	1	0	1	1	0	0	0	0	0	17171	1821	63	0	2553	0	USP43	17	9631430	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	889526	9631430	71563780	323	10923										
GLP2R	0	genome.wustl.edu	37	chr17	9793011	9793011	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggaggagattctggaagagAgtgagatctagggtggagtt	18	2	2	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	9793011	9793011	A	T	SNP	GLP2R	ENST00000262441	human	ensembl	69_37n	1	known	missense	c.1651	p.S551C	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325	50	0	0	25	13	34.21	-	-	-	T	9793011	A	T	9793011	3	4	177	1	0	0	0	0	1	0	0	0	6505	304	11	5	1701	5	GLP2R	17	9793011	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	161581	9793011	71402199	324	10924										
KRTAP4-1	0	genome.wustl.edu	37	chr17	39340725	39340725	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgcacggcagcaggtggtctGacagcagagtggacggcagc	17	10	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	39340725	39340725	G	C	SNP	KRTAP4-1	ENST00000398472	human	ensembl	69_37n	-1	known	missense	c.382	p.Q128E	0.910	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-1	HGNC	ENSG00000198443	70	0	0	51	15	22.73	-	-	-	C	39340725	G	C	39340725	3	2	177	1	0	0	0	0	1	0	0	0	8602	1299	45	2	62	2	KRTAP4-1	17	39340725	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	29547714	39340725	41854485	325	10925										
JUP	0	genome.wustl.edu	37	chr17	39777038	39777038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcagcgaagctgggccagctGctcctccacgctgccaatca	11	16	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	39777038	39777038	G	T	SNP	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	missense	c.1531	p.Q511K	1.000	pfam_F,prints_Keratin_I	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	84	0	0	76	25	24.75	-	-	-	T	39777038	G	T	39777038	3	4	177	1	0	0	0	0	1	0	0	0	8026	1328	46	4		4	JUP	17	39777038	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	436313	39777038	41418172	326	10926										
JUP	0	genome.wustl.edu	37	chr17	39779221	39779221	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cttggtgcggaagtcatcagCagccagacgggcattgtcaa	13	10	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	39779221	39779221	C	A	SNP	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	missense	c.973	p.A325S	1.000	pfam_F,prints_Keratin_I	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	264	0	0	128	41	24.26	-	-	-	A	39779221	C	A	39779221	3	1	177	1	0	0	0	0	1	0	0	0	8026	710	25	4		4	JUP	17	39779221	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2183	39779221	41415989	327	10927										
NAGLU	0	genome.wustl.edu	37	chr17	40695472	40695472	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagctttgccgcccggcggtAtggggtctcccacccggacg	14	16	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	40695472	40695472	A	G	SNP	NAGLU	ENST00000225927	human	ensembl	69_37n	1	known	missense	c.1448	p.Y483C	1.000	pfam_NAGLU_tim-barrel	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784	25	0	0	13	5	27.78	-	-	-	G	40695472	A	G	40695472	3	3	177	1	0	0	0	0	1	0	0	0	10215	449	16	5	1470	5	NAGLU	17	40695472	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	916251	40695472	40499738	328	10928										
CNTNAP1	0	genome.wustl.edu	37	chr17	40840959	40840959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cggcattccatggctgcatgGagctgctcaaggtggatggt	15	9	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	40840959	40840959	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.1522	p.E508K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	332	0	0	327	118	26.52	-	-	-	A	40840959	G	A	40840959	3	1	177	1	0	0	0	0	1	0	0	0	3676	1175	41	2	1560	2	CNTNAP1	17	40840959	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	145487	40840959	40354251	329	10929										
GPATCH8	0	genome.wustl.edu	37	chr17	42475662	42475662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctggactccacagggcctggCtgactgctgctatccaggga	13	13	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	42475662	42475662	C	G	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	missense	c.3783	p.Q1261H	0.033	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	126	0	0	211	85	28.43	-	-	-	G	42475662	C	G	42475662	3	3	177	1	0	0	0	0	1	0	0	0	6644	796	28	4	729	4	GPATCH8	17	42475662	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1634703	42475662	38719548	330	10930										
PLCD3	0	genome.wustl.edu	37	chr17	43190567	43190567	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tctcaatgcgcaccagggggTccacaatggagtgtggcttc	13	11	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	43190567	43190567	T	A	SNP	PLCD3	ENST00000322765	human	ensembl	69_37n	-1	known	missense	c.2051	p.D684V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCD3	HGNC	ENSG00000161714	55	0	0	24	11	31.43	-	-	-	A	43190567	T	A	43190567	3	1	177	1	0	0	0	0	1	0	0	0	12106	1667	58	5	327	5	PLCD3	17	43190567	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	714905	43190567	38004643	331	10931										
NFE2L1	0	genome.wustl.edu	37	chr17	46136577	46136577	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ttcaccaatgacaaaatcatCaacctgcctgtggaggagtt	8	10	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	46136577	46136577	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	silent	c.1893	p.I631	1.000	superfamily_Euk_TF_DNA-bd	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	29	0	0	72	1385	94.09	-	-	-	T	46136577	C	T	46136577	2	4	177	1	0	0	0	0	0	0	0	1	10439	816	29	2		2	NFE2L1	17	46136577	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2946010	46136577	35058633	332	10932			3	25		4	4	328	C		1.107389e-08
NFE2L1	0	genome.wustl.edu	37	chr17	46136612	46136612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggagttcaatgaactgctgtCcaaataccagttgagtgaag	11	7	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	46136612	46136612	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	missense	c.1928	p.S643F	1.000	superfamily_Euk_TF_DNA-bd	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	30	0	0	56	1297	95.72	-	-	-	T	46136612	C	T	46136612	3	4	177	1	0	0	0	0	1	0	0	0	10439	855	30	2	1946	2	NFE2L1	17	46136612	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	35	46136612	35058598	333	10933			3	25		4	4	328	C		1.107389e-08
NFE2L1	0	genome.wustl.edu	37	chr17	46136893	46136893	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gacgaccctactcgcccagtCagtatgcgctccagtacgcc	9	17	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	46136893	46136893	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	nonsense	c.2209	p.Q737*	0.979	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	83	0	0	93	1219	92.91	-	-	-	T	46136893	C	T	46136893	4	4	177	1	0	0	0	0	0	1	0	0	10439	827	29	2	2227	2	NFE2L1	17	46136893	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	281	46136893	35058317	334	10934			3	25		4	4	328	C		1.107389e-08
NFE2L1	0	genome.wustl.edu	37	chr17	46136904	46136904	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcgcccagtcagtatgcgctCcagtacgccggggacggcag	14	14	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	46136904	46136904	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	silent	c.2220	p.L740	0.240	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	74	0	0	84	912	91.57	-	-	-	T	46136904	C	T	46136904	2	4	177	1	0	0	0	0	0	0	0	1	10439	842	30	2		2	NFE2L1	17	46136904	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11	46136904	35058306	335	10935			3	25		4	4	328	C		1.107389e-08
CACNA1G	0	genome.wustl.edu	37	chr17	48683490	48683490	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtggaggtgggctccacgaaGagatcagcccttcacaccct	12	13	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	48683490	48683490	G	A	SNP	CACNA1G	ENST00000416767	human	ensembl	69_37n	1	putative	missense	c.4528	p.E1510K	0.002	NULL	pfam_Ion_trans_dom,prints_VDCC_T_a1su	-	no_errors	CACNA1G	HGNC	ENSG00000006283	48	0	0	31	5	13.89	-	-	-	A	48683490	G	A	48683490	3	1	177	1	0	0	0	0	1	0	0	0	2569	943	33	2	4618	2	CACNA1G	17	48683490	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2546586	48683490	32511720	336	10936										
CACNA1G	0	genome.wustl.edu	37	chr17	48683516	48683516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agcccttcacaccctctgctGtctaaccaccagcatgtcgc	6	18	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	48683516	48683516	G	A	SNP	CACNA1G	ENST00000416767	human	ensembl	69_37n	1	putative	silent	c.4554	p.L1518	0.005	NULL	pfam_Ion_trans_dom,prints_VDCC_T_a1su	-	no_errors	CACNA1G	HGNC	ENSG00000006283	41	0	0	30	5	14.29	-	-	-	A	48683516	G	A	48683516	2	1	177	1	0	0	0	0	0	0	0	1	2569	1364	48	4		4	CACNA1G	17	48683516	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	26	48683516	32511694	337	10937										
TOB1	0	genome.wustl.edu	37	chr17	48940734	48940734	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggctttctgcttcaagagGtcattcacattcaagccgag	9	10	5	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	48940734	48940734	G	A	SNP	TOB1	ENST00000268957	human	ensembl	69_37n	-1	known	silent	c.645	p.D215	1.000	NULL	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB1	HGNC	ENSG00000141232	122	0	0	112	175	60.98	-	-	-	A	48940734	G	A	48940734	2	1	177	1	0	0	0	0	0	0	0	1	16442	1252	44	4		4	TOB1	17	48940734	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	257218	48940734	32254476	338	10938										
MRC2	0	genome.wustl.edu	37	chr17	60749168	60749168	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcatccacagcatggcggagCtggaattcatcaccaagcag	11	12	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	60749168	60749168	C	G	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	missense	c.1276	p.L426V	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	22	0	0	6	26	81.25	-	-	-	G	60749168	C	G	60749168	3	3	177	1	0	0	0	0	1	0	0	0	9830	796	28	4	1302	4	MRC2	17	60749168	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11808434	60749168	20446042	339	10939										
STRADA	0	genome.wustl.edu	37	chr17	61787935	61787935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caatcgccagctcattcatgCcatccatgaagtgtgtacag	8	12	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	61787935	61787935	C	T	SNP	STRADA	ENST00000336174	human	ensembl	69_37n	-1	known	missense	c.497	p.G166D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	191	0	0	91	26	22.03	-	-	-	T	61787935	C	T	61787935	3	4	177	1	0	0	0	0	1	0	0	0	15415	739	26	4	880	4	STRADA	17	61787935	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1038767	61787935	19407275	340	10940										
GRB2	0	genome.wustl.edu	37	chr17	73389776	73389776	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtcttccctgctgaagcaacCcagcgctctgggcttagcct	10	15	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	73389776	73389776	C	A	SNP	GRB2	ENST00000583912	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	GRB2	HGNC	ENSG00000177885	118	0	0	194	23	10.6	-	-	-	A	73389776	C	A	73389776	1	1	177	0	1	0	0	0	0	0	0	0	6809	638	22	4		4	GRB2	17	73389776	RNA	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	11601841	73389776	7805434	341	10941										
SEPT9	0	genome.wustl.edu	37	chr17	75483509	75483509	+	Splice_Site	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcccatcctctccccagggcAgagcggcttgggtaaatcca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	75483509	75483509	A	T	SNP	SEPT9	ENST00000590917	human	ensembl	69_37n	1	putative	splice_site	c.161-2	e2-2	1.000	-	-	-	no_errors	SEPT9	HGNC	ENSG00000184640	92	0	0	36	8	18.18	-	-	-	T	75483509	A	T	75483509	5	4	177	1	0	0	0	0	0	0	1	0	14159	188	7	5	1409	5	SEPT9	17	75483509	Splice_Site	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	2093733	75483509	5711701	342	10942	118	3								
SEPT9	0	genome.wustl.edu	37	chr17	75483511	75483511	+	Missense_Mutation	SNP	A	A	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccatcctctccccagggcagAgcggcttgggtaaatccacc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	75483511	75483511	A	G	SNP	SEPT9	ENST00000427177	human	ensembl	69_37n	1	known	missense	c.919	p.S307G	1.000	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	-	no_errors	SEPT9	HGNC	ENSG00000184640	91	0	0	37	7	15.91	-	-	-	G	75483511	A	G	75483511	3	3	177	1	0	0	0	0	1	0	0	0	14159	304	11	5	1411	5	SEPT9	17	75483511	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	2	75483511	5711699	343	10943	118	3								
SEPT9	0	genome.wustl.edu	37	chr17	75483513	75483513	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atcctctccccagggcagagCggcttgggtaaatccacctt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	75483513	75483513	C	G	SNP	SEPT9	ENST00000427177	human	ensembl	69_37n	1	known	missense	c.921	p.S307R	0.552	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	-	no_errors	SEPT9	HGNC	ENSG00000184640	92	0	0	37	7	15.91	-	-	-	G	75483513	C	G	75483513	3	3	177	1	0	0	0	0	1	0	0	0	14159	767	27	3	1413	3	SEPT9	17	75483513	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2	75483513	5711697	344	10944	118	3								
USP36	0	genome.wustl.edu	37	chr17	76799656	76799656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtgcctggccctccctcctgTacatggggctcccaggctgt	12	16	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	76799656	76799656	T	C	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	missense	c.2621	p.Y874C	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	60	0	0	44	45	50	-	-	-	C	76799656	T	C	76799656	3	2	177	1	0	0	0	0	1	0	0	0	17164	1638	57	5	770	5	USP36	17	76799656	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1316143	76799656	4395554	345	10945										
CARD14	0	genome.wustl.edu	37	chr17	78157893	78157893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caccagctggaggctgaccaCagccgcatgaagcgtgaggt	14	12	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	78157893	78157893	C	G	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	1	known	missense	c.531	p.H177Q	0.949	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	13	0	0	21	7	25	-	-	-	G	78157893	C	G	78157893	3	3	177	1	0	0	0	0	1	0	0	0	2671	477	17	4	541	4	CARD14	17	78157893	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1358237	78157893	3037317	346	10946										
RNF213	0	genome.wustl.edu	37	chr17	78318965	78318965	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgaccaaagcccggggaagcAcatggtcaccatggatgggg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	78318965	78318965	A	-	DEL	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	frame_shift_del	c.6830	p.H2277fs	0.001	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	172	0	0	102	13	11.21	-	-	-	-	78318965	A	-	78318965	7	5	177	1	0	1	0	1	0	0	0	0	13563	159	6	0	7259	0	RNF213	17	78318965	Frame_Shift_Del	DEL	A	TCGA-A8-A07R-01A-21W-A050-09	161072	78318965	2876245	347	10947	119	2								
RNF213	0	genome.wustl.edu	37	chr17	78318967	78318967	+	Missense_Mutation	SNP	A	A	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	accaaagcccggggaagcacAtggtcaccatggatggggtt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	17	78318967	78318967	A	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.6832	p.M2278L	0.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	172	0	0	105	14	11.76	-	-	-	C	78318967	A	C	78318967	3	2	177	1	0	0	0	0	1	0	0	0	13563	217	8	5	7261	5	RNF213	17	78318967	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	2	78318967	2876243	348	10948	119	2								
EMILIN2	0	genome.wustl.edu	37	chr18	2909793	2909793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acaaagtgctggtgaacgacGgggatgtttacaaccccagc	12	10	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	2909793	2909793	G	T	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.2800	p.G934W	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	178	0	0	74	22	22.92	-	-	-	T	2909793	G	T	2909793	3	4	177	1	0	0	0	0	1	0	0	0	5131	1116	39	3	2826	3	EMILIN2	18	2909793	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		2909793	75167455	349	10949										
EPB41L3	0	genome.wustl.edu	37	chr18	5434036	5434036	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctctgactggacagtgtaGgagcccagcaaggccagggt	15	10	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	5434036	5434036	G	T	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	silent	c.690	p.S230	0.998	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	237	0	0	200	46	18.62	-	-	-	T	5434036	G	T	5434036	2	4	177	1	0	0	0	0	0	0	0	1	5191	987	35	4		4	EPB41L3	18	5434036	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2524243	5434036	72643212	350	10950										
ELP2	0	genome.wustl.edu	37	chr18	33750135	33750135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgtgacagctgtcagcgtctGcccagtgctccacccttctc	9	16	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	33750135	33750135	G	T	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	missense	c.2186	p.C729F	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	168	0	0	165	74	30.96	-	-	-	T	33750135	G	T	33750135	3	4	177	1	0	0	0	0	1	0	0	0	5117	1319	46	4	2264	4	ELP2	18	33750135	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	28316099	33750135	44327113	351	10951										
TCF4	0	genome.wustl.edu	37	chr18	52921803	52921803	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccacccatggctccattatgAgaaggtccaatgattccatg	8	12	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	52921803	52921803	A	G	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	silent	c.1581	p.S527	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	169	0	0	83	10	10.75	-	-	-	G	52921803	A	G	52921803	2	3	177	1	0	0	0	0	0	0	0	1	15790	291	11	5		5	TCF4	18	52921803	Silent	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	19171668	52921803	25155445	352	10952										
PHLPP1	0	genome.wustl.edu	37	chr18	60646636	60646636	+	Frame_Shift_Del	DEL	T	T	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcactaccagctggaccagcTgccagattattacgacacgc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	60646636	60646636	T	-	DEL	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	frame_shift_del	c.5126	p.L1709fs	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	19	0	0	12	8	40	-	-	-	-	60646636	T	-	60646636	7	5	177	1	0	1	0	1	0	0	0	0	11928	1580	55	0	5192	0	PHLPP1	18	60646636	Frame_Shift_Del	DEL	T	TCGA-A8-A07R-01A-21W-A050-09	7724833	60646636	17430612	353	10953										
VPS4B	0	genome.wustl.edu	37	chr18	61071015	61071015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttggctccttcaagtccagCaacgtcactccatttcacat	5	14	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	18	61071015	61071015	C	G	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.409	p.A137P	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	182	0	0	71	11	13.25	-	-	-	G	61071015	C	G	61071015	3	3	177	1	0	0	0	0	1	0	0	0	17310	710	25	4	953	4	VPS4B	18	61071015	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	424379	61071015	17006233	354	10954										
AP3D1	0	genome.wustl.edu	37	chr19	2121185	2121185	+	Nonsense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcgaagttggtgatgtactgGtagttggactggctgcagat							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	2121185	2121185	G	C	SNP	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	nonsense	c.1227	p.Y409*	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	347	0	0	75	49	39.52	-	-	-	C	2121185	G	C	2121185	4	2	177	1	0	0	0	0	0	1	0	0	747	1256	44	4	2464	4	AP3D1	19	2121185	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09		2121185	57007798	355	10955	120	2								
AP3D1	0	genome.wustl.edu	37	chr19	2121186	2121186	+	Missense_Mutation	SNP	T	T	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cgaagttggtgatgtactggTagttggactggctgcagatg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	2121186	2121186	T	C	SNP	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	missense	c.1226	p.Y409C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	344	0	0	76	63	45.32	-	-	-	C	2121186	T	C	2121186	3	2	177	1	0	0	0	0	1	0	0	0	747	1638	57	5	2465	5	AP3D1	19	2121186	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1	2121186	57007797	356	10956	120	2								
DOT1L	0	genome.wustl.edu	37	chr19	2223288	2223288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtctgccctcaggtcagtaaCatcaaccagcccctggagat	9	14	4	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	2223288	2223288	C	T	SNP	DOT1L	ENST00000440640	human	ensembl	69_37n	1	novel	missense	c.2759	p.T920I	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOT1L	HGNC	ENSG00000104885	31	0	0	1	7	87.5	-	-	-	T	2223288	C	T	2223288	3	4	177	1	0	0	0	0	1	0	0	0	4744	477	17	4	3497	4	DOT1L	19	2223288	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	102102	2223288	56905695	357	10957										
ZNF77	0	genome.wustl.edu	37	chr19	2934038	2934038	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgctcgcagagaggaggggtAcctgaaggctttgccgcatt	15	9	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	2934038	2934038	A	G	SNP	ZNF77	ENST00000314531	human	ensembl	69_37n	-1	known	missense	c.1087	p.Y363H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	87	0	0	144	21	12.65	-	-	-	G	2934038	A	G	2934038	3	3	177	1	0	0	0	0	1	0	0	0	18236	391	14	5	554	5	ZNF77	19	2934038	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	710750	2934038	56194945	358	10958										
SLC25A41	0	genome.wustl.edu	37	chr19	6430130	6430131	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcctggaccatgctctgtagINScccccccagcaggttggtga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	6430130	6430131	-	C	INS	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	frame_shift_ins	c.406_405	p.L135fs	0.009:0.003	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	62	0	0	37	6	13.95	-	-	-	C	6430131	-	C	6430130	7	5	177	1	0	1	1	0	0	0	0	0	14595	962	34	0	726	0	SLC25A41	19	6430130	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	3496092	6430130	52698853	359	10959										
SLC25A41	0	genome.wustl.edu	37	chr19	6433604	6433605	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgggggtggaggcggaggttINSgggggggaggcggggctttg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	6433604	6433605	-	G	INS	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	frame_shift_ins	c.101_100	p.Q34fs	0.001:0.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	55	0	0	23	3	11.54	-	-	-	G	6433605	-	G	6433604	7	5	177	1	0	1	1	0	0	0	0	0	14595	1812	63	0	1039	0	SLC25A41	19	6433604	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	3474	6433604	52695379	360	10960										
INSR	0	genome.wustl.edu	37	chr19	7122974	7122974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	accaccagcgtgggctggccCttggacaccactcccaggag	12	16	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	7122974	7122974	C	T	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	silent	c.3285	p.K1095	0.997	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	50	0	0	25	21	45.65	-	-	-	T	7122974	C	T	7122974	2	4	177	1	0	0	0	0	0	0	0	1	7827	680	24	4		4	INSR	19	7122974	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	689370	7122974	52006009	361	10961										
ICAM4	0	genome.wustl.edu	37	chr19	10398857	10398857	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gaaatggccatacatggtggCtgacgcctgtaatcccagca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	10398857	10398857	C	-	DEL	ICAM4	ENST00000340992	human	ensembl	69_37n	1	known	frame_shift_del	c.816	p.*273fs	0.003	NULL	pfam_ICAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371	60	0	0	33	9	21.43	-	-	-	-	10398857	C	-	10398857	7	5	177	1	0	1	0	1	0	0	0	0	7536	784	28	0	920	0	ICAM4	19	10398857	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	3275883	10398857	48730126	362	10962										
DNM2	0	genome.wustl.edu	37	chr19	10934492	10934492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acaaggacctgcggcagatcGagctggcctgtgactcccag	13	13	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	10934492	10934492	G	A	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	missense	c.1810	p.E604K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	30	0	0	10	12	54.55	-	-	-	A	10934492	G	A	10934492	3	1	177	1	0	0	0	0	1	0	0	0	4707	1059	37	1	2019	1	DNM2	19	10934492	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	535635	10934492	48194491	363	10963										
ZNF700	0	genome.wustl.edu	37	chr19	12060148	12060148	+	Missense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cctcacagcttcgagtgcacGgtgggactcacactggagag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	12060148	12060148	G	C	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.1309	p.G437R	0.054	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	126	0	0	60	51	45.54	-	-	-	C	12060148	G	C	12060148	3	2	177	1	0	0	0	0	1	0	0	0	18200	1116	39	3	1323	3	ZNF700	19	12060148	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1125656	12060148	47068835	364	10964	121	2								
ZNF700	0	genome.wustl.edu	37	chr19	12060149	12060149	+	Missense_Mutation	SNP	G	G	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctcacagcttcgagtgcacgGtgggactcacactggagaga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	12060149	12060149	G	C	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.1310	p.G437A	0.042	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	127	0	0	60	50	45.45	-	-	-	C	12060149	G	C	12060149	3	2	177	1	0	0	0	0	1	0	0	0	18200	1261	44	4	1324	4	ZNF700	19	12060149	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1	12060149	47068834	365	10965	121	2								
CYP4F11	0	genome.wustl.edu	37	chr19	16025600	16025600	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atgacgcggccgtctgggagCacaaagtcctgcgtgcaaca	13	12	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	16025600	16025600	C	G	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	silent	c.1221	p.V407	0.007	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	174	0	0	36	102	73.91	-	-	-	G	16025600	C	G	16025600	2	3	177	1	0	0	0	0	0	0	0	1	4217	697	25	4		4	CYP4F11	19	16025600	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3965451	16025600	43103383	366	10966										
ABHD8	0	genome.wustl.edu	37	chr19	17411904	17411904	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atgaaaaagagcaccacgtcGgcctgggcgcctttgcagct	12	12	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	17411904	17411904	G	T	SNP	ABHD8	ENST00000247706	human	ensembl	69_37n	-1	known	silent	c.522	p.A174	0.224	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220	22	0	0	3	5	62.5	-	-	-	T	17411904	G	T	17411904	2	4	177	1	0	0	0	0	0	0	0	1	87	1103	39	3		3	ABHD8	19	17411904	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1386304	17411904	41717079	367	10967										
MAST3	0	genome.wustl.edu	37	chr19	18254639	18254639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcccagcccgagcggggtccCagcccatctctcctgaatac	9	18	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	18254639	18254639	C	T	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	silent	c.2319	p.P773	0.992	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	65	0	0	15	6	28.57	-	-	-	T	18254639	C	T	18254639	2	4	177	1	0	0	0	0	0	0	0	1	9397	581	21	4		4	MAST3	19	18254639	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	842735	18254639	40874344	368	10968										
HOMER3	0	genome.wustl.edu	37	chr19	19042357	19042357	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agagcttccagctgttccagCgactggccctggcccagccc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	19042357	19042357	C	-	DEL	HOMER3	ENST00000392351	human	ensembl	69_37n	-1	known	frame_shift_del	c.768	p.L257fs	0.071	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER3	HGNC	ENSG00000051128	32	0	0	13	30	69.77	-	-	-	-	19042357	C	-	19042357	7	5	177	1	0	1	0	1	0	0	0	0	7331	755	27	0	329	0	HOMER3	19	19042357	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	787718	19042357	40086626	369	10969	122	2								
HOMER3	0	genome.wustl.edu	37	chr19	19042364	19042364	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccagctgttccagcgactggCcctggcccagcccctccttc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	19042364	19042364	C	G	SNP	HOMER3	ENST00000392351	human	ensembl	69_37n	-1	known	missense	c.761	p.G254A	0.721	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER3	HGNC	ENSG00000051128	27	0	0	11	29	72.5	-	-	-	G	19042364	C	G	19042364	3	3	177	1	0	0	0	0	1	0	0	0	7331	739	26	4	336	4	HOMER3	19	19042364	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	7	19042364	40086619	370	10970	122	2								
ZNF90	0	genome.wustl.edu	37	chr19	20229739	20229739	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctacaaatgtgaagaatgtgGcaaagccttcaagcgctcct	9	10	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	20229739	20229739	G	C	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	missense	c.1376	p.G459A	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	124	0	0	109	66	37.5	-	-	-	C	20229739	G	C	20229739	3	2	177	1	0	0	0	0	1	0	0	0	18292	1203	42	4	1390	4	ZNF90	19	20229739	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1187375	20229739	38899244	371	10971										
MAG	0	genome.wustl.edu	37	chr19	35802828	35802828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcctgccctgcagaaagaacGtgacagagagccccagcttc	10	14	0	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	35802828	35802828	G	A	SNP	MAG	ENST00000392213	human	ensembl	69_37n	1	known	missense	c.1624	p.V542M	0.986	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MAG	HGNC	ENSG00000105695	35	0	0	29	17	36.96	-	-	-	A	35802828	G	A	35802828	3	1	177	1	0	0	0	0	1	0	0	0	9229	1145	40	1	1654	1	MAG	19	35802828	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	15573089	35802828	23326155	372	10972										
ZNF568	0	genome.wustl.edu	37	chr19	37488450	37488450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cacactggtgagaaaccctaCgagtgtaaggagtgtgggaa	14	7	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	37488450	37488450	C	T	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	silent	c.1665	p.Y555	0.070	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	36	0	0	32	8	20	-	-	-	T	37488450	C	T	37488450	2	4	177	1	0	0	0	0	0	0	0	1	18095	551	19	1		1	ZNF568	19	37488450	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1685622	37488450	21640533	373	10973										
RYR1	0	genome.wustl.edu	37	chr19	38985160	38985160	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gtacaccatctcaccgtcctCcgtggaagacaccatgagcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	38985160	38985160	C	-	DEL	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	frame_shift_del	c.6443	p.V2149fs	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	31	0	0	71	32	31.07	-	-	-	-	38985160	C	-	38985160	7	5	177	1	0	1	0	1	0	0	0	0	13854	855	30	0	6597	0	RYR1	19	38985160	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	1496710	38985160	20143823	374	10974										
ZNF233	0	genome.wustl.edu	37	chr19	44771096	44771096	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggatgatggagacagaaatcCaaggagatgggtgttcaggt	16	4	1	4			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	44771096	44771096	C	T	SNP	ZNF233	ENST00000391958	human	ensembl	69_37n	1	known	nonsense	c.220	p.Q74*	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915	151	0	0	403	319	44.12	-	-	-	T	44771096	C	T	44771096	4	4	177	1	0	0	0	0	0	1	0	0	17882	595	21	4	230	4	ZNF233	19	44771096	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	5785936	44771096	14357887	375	10975										
STRN4	0	genome.wustl.edu	37	chr19	47231375	47231375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccactctgtggggctgtgaaGctctggccctgggggagggg	19	10	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	47231375	47231375	G	A	SNP	STRN4	ENST00000435164	human	ensembl	69_37n	-1	known	missense	c.691	p.L231F	0.028	NULL	pfam_Striatin_N	-	no_errors	STRN4	HGNC	ENSG00000090372	28	0	0	19	8	29.63	-	-	-	A	47231375	G	A	47231375	3	1	177	1	0	0	0	0	1	0	0	0	15422	986	34	4		4	STRN4	19	47231375	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2460279	47231375	11897608	376	10976										
TMEM143	0	genome.wustl.edu	37	chr19	48836625	48836626	+	Frame_Shift_Ins	INS	-	-	AC													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcccgagttccgttgaaggtINScacctcacagcctgacttgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	48836625	48836626	-	AC	INS	TMEM143	ENST00000293261	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1231_1230	p.T410fs	0.491:0.561	NULL	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558	46	0	0	63	26	29.21	-	-	-	AC	48836626	-	AC	48836625	7	5	177	1	0	1	1	0	0	0	0	0	16152	1667	58	0	152	0	TMEM143	19	48836625	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	1605250	48836625	10292358	377	10977										
AP2A1	0	genome.wustl.edu	37	chr19	50295317	50295317	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	acacctgctcaatgaccagcAcatggtgagcccccagccct	8	17	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	50295317	50295317	A	G	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	missense	c.599	p.H200R	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	54	0	0	47	58	55.24	-	-	-	G	50295317	A	G	50295317	3	3	177	1	0	0	0	0	1	0	0	0	740	159	6	5	617	5	AP2A1	19	50295317	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	1458692	50295317	8833666	378	10978										
ACPT	0	genome.wustl.edu	37	chr19	51297015	51297015	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cttgcccagatctcggctttGgatattggagcccacgtggg	13	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	51297015	51297015	G	C	SNP	ACPT	ENST00000270593	human	ensembl	69_37n	1	known	missense	c.720	p.L240F	0.998	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPT	HGNC	ENSG00000142513	63	0	0	22	6	21.43	-	-	-	C	51297015	G	C	51297015	3	2	177	1	0	0	0	0	1	0	0	0	168	1339	47	4	746	4	ACPT	19	51297015	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1001698	51297015	7831968	379	10979										
KLK15	0	genome.wustl.edu	37	chr19	51330210	51330210	+	Silent	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccagacaccacacaggcctcCcccgggtgggggcaacgcgt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	51330210	51330210	C	A	SNP	KLK15	ENST00000326856	human	ensembl	69_37n	-1	known	silent	c.405	p.G135	0.003	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	26	0	0	29	29	50	-	-	-	A	51330210	C	A	51330210	2	1	177	1	0	0	0	0	0	0	0	1	8456	610	22	4		4	KLK15	19	51330210	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	33195	51330210	7798773	380	10980	123	2								
KLK15	0	genome.wustl.edu	37	chr19	51330212	51330212	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agacaccacacaggcctcccCcgggtgggggcaacgcgtgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	51330212	51330212	C	T	SNP	KLK15	ENST00000326856	human	ensembl	69_37n	-1	known	missense	c.403	p.G135R	0.750	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	26	0	0	30	28	48.28	-	-	-	T	51330212	C	T	51330212	3	4	177	1	0	0	0	0	1	0	0	0	8456	623	22	4	379	4	KLK15	19	51330212	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2	51330212	7798771	381	10981	123	2								
PRKCG	0	genome.wustl.edu	37	chr19	54401697	54401697	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggaactgtgcgcataggtgAtgctggccgagcgcaggggc	18	9	0	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	54401697	54401697	A	C	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	missense	c.1096	p.M366L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	28	0	0	31	5	13.51	-	-	-	C	54401697	A	C	54401697	3	2	177	1	0	0	0	0	1	0	0	0	12593	333	12	5	1138	5	PRKCG	19	54401697	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3071485	54401697	4727286	382	10982										
NLRP8	0	genome.wustl.edu	37	chr19	56473437	56473437	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tctcccttccatgtagagcgCcagagagcaatgggctgcat	11	12	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	56473437	56473437	C	A	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.2047	p.P683T	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	185	0	0	331	52	13.58	-	-	-	A	56473437	C	A	56473437	3	1	177	1	0	0	0	0	1	0	0	0	10555	739	26	4	2061	4	NLRP8	19	56473437	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2071740	56473437	2655546	383	10983										
ZNF460	0	genome.wustl.edu	37	chr19	57802751	57802751	+	Missense_Mutation	SNP	T	T	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagtggagagaagccttttgTgtgcaatgaatgtggaaagg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	57802751	57802751	T	A	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.842	p.V281E	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	109	0	0	156	72	31.44	-	-	-	A	57802751	T	A	57802751	3	1	177	1	0	0	0	0	1	0	0	0	18020	1696	59	5	852	5	ZNF460	19	57802751	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1329314	57802751	1326232	384	10984	124	2								
ZNF460	0	genome.wustl.edu	37	chr19	57802758	57802758	+	Missense_Mutation	SNP	T	T	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gagaagccttttgtgtgcaaTgaatgtggaaaggcctttac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	57802758	57802758	T	A	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.849	p.N283K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	109	0	0	165	83	33.47	-	-	-	A	57802758	T	A	57802758	3	1	177	1	0	0	0	0	1	0	0	0	18020	1461	51	5	859	5	ZNF460	19	57802758	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	7	57802758	1326225	385	10985	124	2								
ZNF460	0	genome.wustl.edu	37	chr19	57803103	57803103	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttgagtgcaaagaatgtggGaaagcctttagcattcgaaa	11	5	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	19	57803103	57803103	G	A	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	silent	c.1194	p.G398	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	214	0	0	319	58	15.38	-	-	-	A	57803103	G	A	57803103	2	1	177	1	0	0	0	0	0	0	0	1	18020	1161	41	2		2	ZNF460	19	57803103	Silent	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	345	57803103	1325880	386	10986										
TRMT6	0	genome.wustl.edu	37	chr20	5921819	5921819	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagaattctgttaagaactaCttcctgggatgcagtttaag	9	7	1	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	5921819	5921819	C	T	SNP	TRMT6	ENST00000466974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRMT6	HGNC	ENSG00000089195	271	0	0	197	34	14.72	-	-	-	T	5921819	C	T	5921819	1	4	177	0	1	0	0	0	0	0	0	0	16664	580	20	4		4	TRMT6	20	5921819	RNA	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		5921819	57103701	387	10987										
PLCB1	0	genome.wustl.edu	37	chr20	8719944	8719944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggcctgtttgagaatagcaGtttatgaagaaggaggtaaa	13	3	0	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	8719944	8719944	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.2245	p.V749I	1.000	pirsf_PLC-beta,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	289	0	0	101	50	32.68	-	-	-	A	8719944	G	A	8719944	3	1	177	1	0	0	0	0	1	0	0	0	12101	1029	36	4	2327	4	PLCB1	20	8719944	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2798125	8719944	54305576	388	10988										
TGM2	0	genome.wustl.edu	37	chr20	36779424	36779424	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgggtgaggacatactcctGccgctcctcttccgagtcca	10	15	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	36779424	36779424	G	A	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	nonsense	c.469	p.Q157*	0.007	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	134	0	0	65	9	12.16	-	-	-	A	36779424	G	A	36779424	4	1	177	1	0	0	0	0	0	1	0	0	15925	1328	46	4	1666	4	TGM2	20	36779424	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	28059480	36779424	26246096	389	10989										
MYBL2	0	genome.wustl.edu	37	chr20	42338638	42338638	+	Missense_Mutation	SNP	A	A	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tcagaagtactccatggacaAcactccccacacgccaaccc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	42338638	42338638	A	T	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.1541	p.N514I	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	147	0	0	76	10	11.63	-	-	-	T	42338638	A	T	42338638	3	4	177	1	0	0	0	0	1	0	0	0	10082	43	2	5	1579	5	MYBL2	20	42338638	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	5559214	42338638	20686882	390	10990	125	2								
MYBL2	0	genome.wustl.edu	37	chr20	42338639	42338639	+	Missense_Mutation	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagaagtactccatggacaaCactccccacacgccaacccc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	42338639	42338639	C	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.1542	p.N514K	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	146	0	0	75	13	14.77	-	-	-	A	42338639	C	A	42338639	3	1	177	1	0	0	0	0	1	0	0	0	10082	477	17	4	1580	4	MYBL2	20	42338639	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1	42338639	20686881	391	10991	125	2								
TTPAL	0	genome.wustl.edu	37	chr20	43115318	43115318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	catttttgccatcataaaacCatttctaaaggagaaaatag	5	7	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	43115318	43115318	C	A	SNP	TTPAL	ENST00000262605	human	ensembl	69_37n	1	known	missense	c.722	p.P241Q	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	215	0	0	159	18	10.17	-	-	-	A	43115318	C	A	43115318	3	1	177	1	0	0	0	0	1	0	0	0	16834	594	21	4	732	4	TTPAL	20	43115318	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	776679	43115318	19910202	392	10992										
KCNB1	0	genome.wustl.edu	37	chr20	47991007	47991008	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	caccagaaagaggctgggatINSgcttttgaacttggtgtcgt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	47991007	47991008	-	G	INS	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1090_1089	p.I363fs	1.000:1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	53	0	0	40	10	20	-	-	-	G	47991008	-	G	47991007	7	5	177	1	0	1	1	0	0	0	0	0	8066	1464	51	0	1490	0	KCNB1	20	47991007	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	4875689	47991007	15034513	393	10993										
ADRM1	0	genome.wustl.edu	37	chr20	60881358	60881358	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccagcggaagcagcggccacGaactctctgcgctaggcggt	14	14	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	60881358	60881358	G	C	SNP	ADRM1	ENST00000253003	human	ensembl	69_37n	1	known	missense	c.436	p.E146Q	1.000	pfam_26S_Psome_Ubiquitin-recp_Rpn13	pfam_26S_Psome_Ubiquitin-recp_Rpn13	-	no_errors	ADRM1	HGNC	ENSG00000130706	84	0	0	13	5	27.78	-	-	-	C	60881358	G	C	60881358	3	2	177	1	0	0	0	0	1	0	0	0	345	1059	37	3	446	3	ADRM1	20	60881358	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	12890351	60881358	2144162	394	10994										
DIDO1	0	genome.wustl.edu	37	chr20	61513156	61513156	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tactcctcctcagggtcgtaTggcctgtcgtcctcctcttc	8	16	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	20	61513156	61513156	T	C	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.4152	p.P1384	0.308	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	138	0	0	61	16	20.78	-	-	-	C	61513156	T	C	61513156	2	2	177	1	0	0	0	0	0	0	0	1	4558	1451	51	5		5	DIDO1	20	61513156	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	631798	61513156	1512364	395	10995										
PRDM15	0	genome.wustl.edu	37	chr21	43274714	43274714	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgcttcagcatgggcttgtCcatcttcttggcatagaagg	11	10	3	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	21	43274714	43274714	C	G	SNP	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	missense	c.1597	p.D533H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	25	0	0	11	5	31.25	-	-	-	G	43274714	C	G	43274714	3	3	177	1	0	0	0	0	1	0	0	0	12537	855	30	2	3006	2	PRDM15	21	43274714	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09		43274714	4855181	396	10996										
PKNOX1	0	genome.wustl.edu	37	chr21	44438269	44438269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagtgtatcagcctgtcacgGtcgtcactccccaaggccaa	9	15	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	21	44438269	44438269	G	A	SNP	PKNOX1	ENST00000291547	human	ensembl	69_37n	1	known	missense	c.649	p.V217I	0.997	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX1	HGNC	ENSG00000160199	174	0	0	138	32	18.6	-	-	-	A	44438269	G	A	44438269	3	1	177	1	0	0	0	0	1	0	0	0	12056	1261	44	4	671	4	PKNOX1	21	44438269	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	1163555	44438269	3691626	397	10997										
AP1B1	0	genome.wustl.edu	37	chr22	29747816	29747816	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atgcttcaggatctcaggccTggtggtggggcaggatgccc	16	10	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	29747816	29747816	T	A	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	splice_site	c.939-2	e7-2	1.000	-	-	-	no_errors	AP1B1	HGNC	ENSG00000100280	143	0	0	91	86	48.59	-	-	-	A	29747816	T	A	29747816	5	1	177	1	0	0	0	0	0	0	1	0	732	1594	55	5	1976	5	AP1B1	22	29747816	Splice_Site	SNP	T	TCGA-A8-A07R-01A-21W-A050-09		29747816	21556750	398	10998										
DEPDC5	0	genome.wustl.edu	37	chr22	32241073	32241073	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcctgtgtcaccgccaccaaGcgcatcacggagggggaggc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	32241073	32241073	G	-	DEL	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	frame_shift_del	c.2871	p.K957fs	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	169	0	0	236	32	11.9	-	-	-	-	32241073	G	-	32241073	7	5	177	1	0	1	0	1	0	0	0	0	4478	962	34	0	2976	0	DEPDC5	22	32241073	Frame_Shift_Del	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	2493257	32241073	19063493	399	10999										
HMGXB4	0	genome.wustl.edu	37	chr22	35684386	35684386	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taagcctcattggacaccgtCtgcaggaaactgaggtgaat	11	9	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	35684386	35684386	C	A	SNP	HMGXB4	ENST00000216106	human	ensembl	69_37n	1	known	missense	c.1624	p.L542M	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	184	0	0	181	40	18.1	-	-	-	A	35684386	C	A	35684386	3	1	177	1	0	0	0	0	1	0	0	0	7290	912	32	2	1654	2	HMGXB4	22	35684386	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3443313	35684386	15620180	400	11000										
MCM5	0	genome.wustl.edu	37	chr22	35815944	35815944	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	accgctacatcatcatgcggAgcggggcccgtcagcacgag	13	14	3	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	35815944	35815944	A	T	SNP	MCM5	ENST00000216122	human	ensembl	69_37n	1	known	missense	c.1771	p.S591C	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_5,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297	31	0	0	13	4	21.05	-	-	-	T	35815944	A	T	35815944	3	4	177	1	0	0	0	0	1	0	0	0	9461	304	11	5	1821	5	MCM5	22	35815944	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	131558	35815944	15488622	401	11001										
CARD10	0	genome.wustl.edu	37	chr22	37906381	37906381	+	Silent	SNP	T	T	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cccctggcccttcgaagcagTgcacactcttcctccagccg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	37906381	37906381	T	A	SNP	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	silent	c.747	p.A249	0.001	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	54	0	0	29	15	34.09	-	-	-	A	37906381	T	A	37906381	2	1	177	1	0	0	0	0	0	0	0	1	2669	1683	59	5		5	CARD10	22	37906381	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2090437	37906381	13398185	402	11002	126	3								
CARD10	0	genome.wustl.edu	37	chr22	37906383	37906384	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctggcccttcgaagcagtgcINSacactcttcctccagccgac							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	37906383	37906384	-	A	INS	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	frame_shift_ins	c.745_744	p.A248fs	0.000:0.023	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	52	0	0	28	15	34.88	-	-	-	A	37906384	-	A	37906383	7	5	177	1	0	1	1	0	0	0	0	0	2669	710	25	0	2421	0	CARD10	22	37906383	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	2	37906383	13398183	403	11003	126	3								
CARD10	0	genome.wustl.edu	37	chr22	37906385	37906385	+	Missense_Mutation	SNP	C	C	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggcccttcgaagcagtgcaCactcttcctccagccgactc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	37906385	37906385	C	G	SNP	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	missense	c.743	p.C248S	0.998	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	54	0	0	30	15	33.33	-	-	-	G	37906385	C	G	37906385	3	3	177	1	0	0	0	0	1	0	0	0	2669	478	17	4	2423	4	CARD10	22	37906385	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2	37906385	13398181	404	11004	126	3								
CDC42EP1	0	genome.wustl.edu	37	chr22	37962638	37962639	+	Frame_Shift_Ins	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tggtgcggagggtgggggcgINScccccccggaggatggcatc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	37962638	37962639	-	C	INS	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	frame_shift_ins	c.282_283	p.R96fs	0.000:0.001	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	72	0	0	44	5	10.2	-	-	-	C	37962639	-	C	37962638	7	5	177	1	0	1	1	0	0	0	0	0	3104	1074	38	0	284	0	CDC42EP1	22	37962638	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	56253	37962638	13341928	405	11005										
GALR3	0	genome.wustl.edu	37	chr22	38219626	38219626	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcggtggctgacctctgcttCatcctgtgctgcgtgccctt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	38219626	38219626	C	-	DEL	GALR3	ENST00000249041	human	ensembl	69_37n	1	known	frame_shift_del	c.213	p.F71fs	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Galnin_3_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GALR3	HGNC	ENSG00000128310	90	0	0	26	4	12.9	-	-	-	-	38219626	C	-	38219626	7	5	177	1	0	1	0	1	0	0	0	0	6279	825	29	0	215	0	GALR3	22	38219626	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	256988	38219626	13084940	406	11006										
CBX7	0	genome.wustl.edu	37	chr22	39534676	39534676	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cttgggtttcggacctctctTcctataccccgatgctcggt	9	14	1	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	39534676	39534676	T	G	SNP	CBX7	ENST00000216133	human	ensembl	69_37n	-1	known	missense	c.211	p.K71Q	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX7	HGNC	ENSG00000100307	197	0	0	71	8	10.13	-	-	-	G	39534676	T	G	39534676	3	3	177	1	0	0	0	0	1	0	0	0	2748	1792	62	5	556	5	CBX7	22	39534676	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1315050	39534676	11769890	407	11007										
SREBF2	0	genome.wustl.edu	37	chr22	42273963	42273963	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taggttctgggggctggtttGactggatgatgcctactctt	14	7	2	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	42273963	42273963	G	C	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	missense	c.1597	p.D533H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	277	0	0	112	127	53.14	-	-	-	C	42273963	G	C	42273963	3	2	177	1	0	0	0	0	1	0	0	0	15233	1290	45	2	1631	2	SREBF2	22	42273963	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	2739287	42273963	9030603	408	11008										
SAMM50	0	genome.wustl.edu	37	chr22	44379821	44379821	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttttgtcctaggttttaccTtgggggacccacaagcatcc	10	11	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	22	44379821	44379821	T	A	SNP	SAMM50	ENST00000350028	human	ensembl	69_37n	1	known	missense	c.1016	p.L339H	0.997	pfam_Bac_surfAg_D15	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347	211	0	0	186	25	11.68	-	-	-	A	44379821	T	A	44379821	3	1	177	1	0	0	0	0	1	0	0	0	13915	1609	56	5	1062	5	SAMM50	22	44379821	Missense_Mutation	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	2105858	44379821	6924745	409	11009										
MXRA5	0	genome.wustl.edu	37	chrX	3228969	3228969	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cacaccgtcttcctatcctcTcccgcgctgttcctgaccaa	5	19	2	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	3228969	3228969	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.7275	p.G2425	0.958	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	68	0	0	32	20	38.46	-	-	-	C	3228969	T	C	3228969	2	2	177	1	0	0	0	0	0	0	0	1	10075	1538	54	5		5	MXRA5	23	3228969	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09		3228969	152041591	410	11010										
CA5B	0	genome.wustl.edu	37	chrX	15800681	15800681	+	Missense_Mutation	SNP	C	C	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aatggtggacaacttccgccCccttcagccactgatgaatc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	15800681	15800681	C	A	SNP	CA5B	ENST00000318636	human	ensembl	69_37n	1	known	missense	c.848	p.P283H	0.990	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA5B	HGNC	ENSG00000169239	207	0	0	155	22	12.29	-	-	-	A	15800681	C	A	15800681	3	1	177	1	0	0	0	0	1	0	0	0	2545	623	22	4	874	4	CA5B	23	15800681	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	12571712	15800681	139469879	411	11011	127	2								
CA5B	0	genome.wustl.edu	37	chrX	15800682	15800682	+	Silent	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	atggtggacaacttccgcccCcttcagccactgatgaatcg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	15800682	15800682	C	T	SNP	CA5B	ENST00000318636	human	ensembl	69_37n	1	known	silent	c.849	p.P283	0.825	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA5B	HGNC	ENSG00000169239	206	0	0	156	20	11.36	-	-	-	T	15800682	C	T	15800682	2	4	177	1	0	0	0	0	0	0	0	1	2545	610	22	4		4	CA5B	23	15800682	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1	15800682	139469878	412	11012	127	2								
SH3KBP1	0	genome.wustl.edu	37	chrX	19606866	19606866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccgaggcttttttggcggtAtggcaggaacggagggcttc	17	8	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	19606866	19606866	A	G	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.1193	p.I398T	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	505	0	0	387	814	67.27	-	-	-	G	19606866	A	G	19606866	3	3	177	1	0	0	0	0	1	0	0	0	14344	449	16	5	832	5	SH3KBP1	23	19606866	Missense_Mutation	SNP	A	TCGA-A8-A07R-01A-21W-A050-09	3806184	19606866	135663694	413	11013										
POLA1	0	genome.wustl.edu	37	chrX	25014005	25014005	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	cagcagagcaattcttgtccCgaagtggctactccgaagtg	11	11	1	1			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	25014005	25014005	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	nonsense	c.4345	p.R1449*	0.009	pfam_Znf_DNA-dir_DNA_pol_B_alpha	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	214	0	0	188	101	34.71	-	-	-	T	25014005	C	T	25014005	4	4	177	1	0	0	0	0	0	1	0	0	12261	644	23	1	4473	1	POLA1	23	25014005	Nonsense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	5407139	25014005	130256555	414	11014										
SLC35A2	0	genome.wustl.edu	37	chrX	48767129	48767129	+	Frame_Shift_Del	DEL	C	C	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcagcagcaggcaggtgagaCctttgagcacttccgccatg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	48767129	48767129	C	-	DEL	SLC35A2	ENST00000452555	human	ensembl	69_37n	-1	known	frame_shift_del	c.320	p.G107fs	0.997	pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100	108	0	0	84	17	16.67	-	-	-	-	48767129	C	-	48767129	7	5	177	1	0	1	0	1	0	0	0	0	14660	507	18	0	1126	0	SLC35A2	23	48767129	Frame_Shift_Del	DEL	C	TCGA-A8-A07R-01A-21W-A050-09	23753124	48767129	106503431	415	11015										
SMC1A	0	genome.wustl.edu	37	chrX	53432450	53432451	+	Frame_Shift_Ins	INS	-	-	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gcgctggtggcctccaaaggINScaatgcggcgggcatcttcc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	53432450	53432451	-	T	INS	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1886_1885	p.A629fs	1.000:1.000	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	85	0	0	63	7	10	-	-	-	T	53432451	-	T	53432450	7	5	177	1	0	1	1	0	0	0	0	0	14870	1203	42	0	1875	0	SMC1A	23	53432450	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	4665321	53432450	101838110	416	11016										
AR	0	genome.wustl.edu	37	chrX	66931270	66931270	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctgaagaaacttggtaatCtgaaactacaggaggaagga	12	5	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	66931270	66931270	C	A	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	missense	c.1912	p.L638M	0.999	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	110	0	0	33	39	54.17	-	-	-	A	66931270	C	A	66931270	3	1	177	1	0	0	0	0	1	0	0	0	838	912	32	2	1950	2	AR	23	66931270	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	13498820	66931270	88339290	417	11017										
PJA1	0	genome.wustl.edu	37	chrX	68381070	68381070	+	Silent	SNP	T	T	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gattggttttatttccattgTtaatttcaagagggctcctg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	68381070	68381070	T	C	SNP	PJA1	ENST00000471141	human	ensembl	69_37n	-1	putative	silent	c.168	p.*56	0.014	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PJA1	HGNC	ENSG00000181191	43	0	0	7	92	92.93	-	-	-	C	68381070	T	C	68381070	2	2	177	1	0	0	0	0	0	0	0	1	12035	1740	60	5		5	PJA1	23	68381070	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1449800	68381070	86889490	418	11018	128	2								
PJA1	0	genome.wustl.edu	37	chrX	68381071	68381071	+	Silent	SNP	T	T	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	attggttttatttccattgtTaatttcaagagggctcctgc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	68381071	68381071	T	C	SNP	PJA1	ENST00000471141	human	ensembl	69_37n	-1	putative	silent	c.167	p.*56	0.029	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PJA1	HGNC	ENSG00000181191	44	0	0	7	96	93.2	-	-	-	C	68381071	T	C	68381071	2	2	177	1	0	0	0	0	0	0	0	1	12035	1769	61	5		5	PJA1	23	68381071	Silent	SNP	T	TCGA-A8-A07R-01A-21W-A050-09	1	68381071	86889489	419	11019	128	2								
CXCR3	0	genome.wustl.edu	37	chrX	70837027	70837027	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgtcagcaccagcagcgtgtCtgctacagctaggtggagca	13	11	2	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	70837027	70837027	C	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.436	p.D146N	0.981	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	34	0	0	24	10	29.41	-	-	-	T	70837027	C	T	70837027	3	4	177	1	0	0	0	0	1	0	0	0	4123	913	32	2	815	2	CXCR3	23	70837027	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	2455956	70837027	84433533	420	11020										
PLP1	0	genome.wustl.edu	37	chrX	103041099	103041100	+	Splice_Site	INS	-	-	C													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tgtctagctccctactcctgINStgagttagcatgtctgaagg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	103041099	103041100	-	C	INS	PLP1	ENST00000461231	human	ensembl	69_37n	1	known	splice_site_ins	c.NULL	NULL	0.039:0.011	-	-	-	no_errors	PLP1	HGNC	ENSG00000123560	8	0	0	3	10	76.92	-	-	-	C	103041100	-	C	103041099	8	5	177	1	0	1	1	0	0	0	1	0	12178	1392	48	0		0	PLP1	23	103041099	Splice_Site	INS	-	TCGA-A8-A07R-01A-21W-A050-09	32204072	103041099	52229461	421	11021										
COL4A6	0	genome.wustl.edu	37	chrX	107421948	107421948	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aagcctggtgctcctgggagCccagatttgcccttgatgcc	12	13	0	2			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	107421948	107421948	C	G	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.2484	p.G828	0.002	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	167	0	0	125	14	10	-	-	-	G	107421948	C	G	107421948	2	3	177	1	0	0	0	0	0	0	0	1	3725	726	26	4		4	COL4A6	23	107421948	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	4380849	107421948	47848612	422	11022										
KIAA1210	0	genome.wustl.edu	37	chrX	118222228	118222228	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aactttaggattcatcaaggGctggcaaagaagtttaggag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	118222228	118222228	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.2965	p.P989S	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	151	0	0	126	37	22.56	-	-	-	A	118222228	G	A	118222228	3	1	177	1	0	0	0	0	1	0	0	0	8266	1203	42	4	2180	4	KIAA1210	23	118222228	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	10800280	118222228	37048332	423	11023	129	3								
KIAA1210	0	genome.wustl.edu	37	chrX	118222231	118222231	+	Nonsense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	tttaggattcatcaagggctGgcaaagaagtttaggaggca							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	118222231	118222231	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	nonsense	c.2962	p.Q988*	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	154	0	0	130	44	25.29	-	-	-	A	118222231	G	A	118222231	4	1	177	1	0	0	0	0	0	1	0	0	8266	1357	47	4	2183	4	KIAA1210	23	118222231	Nonsense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3	118222231	37048329	424	11024	129	3								
KIAA1210	0	genome.wustl.edu	37	chrX	118222237	118222237	+	Missense_Mutation	SNP	G	G	A													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	attcatcaagggctggcaaaGaagtttaggaggcagaggct							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	118222237	118222237	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.2956	p.L986F	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	166	0	0	130	50	27.78	-	-	-	A	118222237	G	A	118222237	3	1	177	1	0	0	0	0	1	0	0	0	8266	942	33	2	2189	2	KIAA1210	23	118222237	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	6	118222237	37048323	425	11025	129	3								
KIAA1210	0	genome.wustl.edu	37	chrX	118222419	118222421	+	In_Frame_Del	DEL	TGC	TGC	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ctgaactggtggggacttgtTgctgaacagtaggattcata							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	118222419	118222421	TGC	-	DEL	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	in_frame_del	c.2774_2772	p.Q926in_frame_del	0.002:0.003:0.001	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	204	0	0	194	24	11.01	-	-	-	-	118222421	TGC	-	118222419	7	5	177	1	0	1	0	1	0	0	0	0	8266	1812	63	0	2371	0	KIAA1210	23	118222419	In_Frame_Del	DEL	TGC	TCGA-A8-A07R-01A-21W-A050-09	182	118222419	37048141	426	11026										
MAMLD1	0	genome.wustl.edu	37	chrX	149639505	149639505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	attttgtttctgagccgggtCcccagaagatgccctccatg	10	12	1	3			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	149639505	149639505	C	T	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	missense	c.1585	p.P529S	0.436	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	172	0	0	70	12	14.63	-	-	-	T	149639505	C	T	149639505	3	4	177	1	0	0	0	0	1	0	0	0	9279	855	30	2	1670	2	MAMLD1	23	149639505	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	31417086	149639505	5631055	427	11027										
PDZD4	0	genome.wustl.edu	37	chrX	153070189	153070189	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ggccaaacttgcgcaggcttCccggggtgttggtggagctc							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153070189	153070189	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.929	p.G310E	0.982	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	44	0	0	2	8	80	-	-	-	T	153070189	C	T	153070189	3	4	177	1	0	0	0	0	1	0	0	0	11776	855	30	2	1384	2	PDZD4	23	153070189	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	3430684	153070189	2200371	428	11028	130	3								
PDZD4	0	genome.wustl.edu	37	chrX	153070190	153070190	+	Missense_Mutation	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gccaaacttgcgcaggcttcCcggggtgttggtggagctcg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153070190	153070190	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.928	p.G310R	0.980	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	43	0	0	2	8	80	-	-	-	T	153070190	C	T	153070190	3	4	177	1	0	0	0	0	1	0	0	0	11776	632	22	4	1385	4	PDZD4	23	153070190	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1	153070190	2200370	429	11029	130	3								
PDZD4	0	genome.wustl.edu	37	chrX	153070191	153070191	+	Silent	SNP	C	C	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	ccaaacttgcgcaggcttccCggggtgttggtggagctcgg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153070191	153070191	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	silent	c.927	p.P309	0.393	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	44	0	0	2	8	80	-	-	-	T	153070191	C	T	153070191	2	4	177	1	0	0	0	0	0	0	0	1	11776	639	23	1		1	PDZD4	23	153070191	Silent	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	1	153070191	2200369	430	11030	130	3								
PDZD4	0	genome.wustl.edu	37	chrX	153070217	153070217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gttggtggagctcgggggttCgtcccccagcaggtcgtgct	17	11	0	0			TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153070217	153070217	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.901	p.E301K	0.887	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	37	0	0	0	13	100	-	-	-	T	153070217	C	T	153070217	3	4	177	1	0	0	0	0	1	0	0	0	11776	893	31	1	1412	1	PDZD4	23	153070217	Missense_Mutation	SNP	C	TCGA-A8-A07R-01A-21W-A050-09	26	153070217	2200343	431	11031										
IRAK1	0	genome.wustl.edu	37	chrX	153284647	153284648	+	Frame_Shift_Ins	INS	-	-	G													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	taacaaccgggccctcttacINSctggggagaggaaggtggag							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153284647	153284648	-	G	INS	IRAK1	ENST00000369980	human	ensembl	69_37n	-1	known	frame_shift_ins	c.437_436	p.P148fs	0.998:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	70	0	0	13	6	31.58	-	-	-	G	153284648	-	G	153284647	7	5	177	1	0	1	1	0	0	0	0	0	7875	521	18	0	1749	0	IRAK1	23	153284647	Frame_Shift_Ins	INS	-	TCGA-A8-A07R-01A-21W-A050-09	214430	153284647	1985913	432	11032										
SLC10A3	0	genome.wustl.edu	37	chrX	153716489	153716489	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	agctccccccgccgccaggcGacgagcaggtgatgatgagg							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153716489	153716489	G	-	DEL	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	frame_shift_del	c.791	p.S264fs	0.272	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	69	0	0	3	11	68.75	-	-	-	-	153716489	G	-	153716489	7	5	177	1	0	1	0	1	0	0	0	0	14464	1059	37	0	646	0	SLC10A3	23	153716489	Frame_Shift_Del	DEL	G	TCGA-A8-A07R-01A-21W-A050-09	431842	153716489	1554071	433	11033										
SLC10A3	0	genome.wustl.edu	37	chrX	153716700	153716700	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	gataagaggcaggagcaggtAgaggattgggttttccgaga							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153716700	153716700	A	-	DEL	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	frame_shift_del	c.580	p.Y194fs	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	53	0	0	5	17	77.27	-	-	-	-	153716700	A	-	153716700	7	5	177	1	0	1	0	1	0	0	0	0	14464	420	15	0	857	0	SLC10A3	23	153716700	Frame_Shift_Del	DEL	A	TCGA-A8-A07R-01A-21W-A050-09	211	153716700	1553860	434	11034	131	2								
SLC10A3	0	genome.wustl.edu	37	chrX	153716703	153716703	+	Missense_Mutation	SNP	G	G	T													0.0727272727272727	28	0.324100654733362	1.2708718811326	1.2982292014701	1.25109876841343	0.460130546942633	1	0	aagaggcaggagcaggtagaGgattgggttttccgagaagt							TCGA-A8-A07R-01A-21W-A050-09	TCGA-A8-A07R-10B-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f377217c-399f-4b3f-9090-fa5189b2bfc6	33e470a6-8474-437d-9161-050d972d3fc8	X	153716703	153716703	G	T	SNP	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	missense	c.577	p.L193I	0.992	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	54	0	0	5	19	79.17	-	-	-	T	153716703	G	T	153716703	3	4	177	1	0	0	0	0	1	0	0	0	14464	1000	35	4	860	4	SLC10A3	23	153716703	Missense_Mutation	SNP	G	TCGA-A8-A07R-01A-21W-A050-09	3	153716703	1553857	435	11035	131	2								
CLK2	0	genome.wustl.edu	37	chr1	155233103	155233104	+	Frame_Shift_Ins	INS	-	-	C													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ctgaagggcttcacccaaggINStcagccgcttagctggttca							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	1	155233103	155233104	-	C	INS	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1406_1405	p.T469fs	1.000:1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	131	0	0	124	92	42.59	-	-	-	C	155233104	-	C	155233103	7	5	178	1	0	1	1	0	0	0	0	0	3567	1261	44	0	97	0	CLK2	1	155233103	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09		155233103	94017518	1	11036	132	2								
CLK2	0	genome.wustl.edu	37	chr1	155233108	155233109	+	Frame_Shift_Ins	INS	-	-	T													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gggcttcacccaaggtcagcINScgcttagctggttcatactc							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	1	155233108	155233109	-	T	INS	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1401_1400	p.L468fs	0.935:1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	132	0	0	126	92	42.2	-	-	-	T	155233109	-	T	155233108	7	5	178	1	0	1	1	0	0	0	0	0	3567	726	26	0	102	0	CLK2	1	155233108	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09	5	155233108	94017513	2	11037	132	2								
HNRNPU	0	genome.wustl.edu	37	chr1	245027315	245027315	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ctccatctggtcgccgtccaGagcggagattccttcctcct	9	16	1	2			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	1	245027315	245027315	G	A	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	silent	c.295	p.L99	0.994	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	14	0	0	19	6	24	-	-	-	A	245027315	G	A	245027315	2	1	178	1	0	0	0	0	0	0	0	1	7324	933	33	2		2	HNRNPU	1	245027315	Silent	SNP	G	TCGA-A8-A07U-01A-11W-A050-09	89794207	245027315	4223306	3	11038										
KCNE4	0	genome.wustl.edu	37	chr2	223917604	223917604	+	Frame_Shift_Del	DEL	G	G	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cggcaccgccgcctccagcaGccccctggagtcccgtgcgg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	2	223917604	223917604	G	-	DEL	KCNE4	ENST00000281830	human	ensembl	69_37n	1	known	frame_shift_del	c.56	p.S19fs	0.005	NULL	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE4	HGNC	ENSG00000152049	19	0	0	6	6	50	-	-	-	-	223917604	G	-	223917604	7	5	178	1	0	1	0	1	0	0	0	0	8079	971	34	0	58	0	KCNE4	2	223917604	Frame_Shift_Del	DEL	G	TCGA-A8-A07U-01A-11W-A050-09		223917604	19281769	4	11039	133	2								
KCNE4	0	genome.wustl.edu	37	chr2	223917614	223917615	+	Frame_Shift_Del	DEL	GT	GT	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gcctccagcagccccctggaGtcccgtgcggccggcggcgg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	2	223917614	223917615	GT	-	DEL	KCNE4	ENST00000281830	human	ensembl	69_37n	1	known	frame_shift_del	c.66_67	p.E22fs	0.001:0.003	NULL	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE4	HGNC	ENSG00000152049	19	0	0	8	6	42.86	-	-	-	-	223917615	GT	-	223917614	7	5	178	1	0	1	0	1	0	0	0	0	8079	1020	36	0	68	0	KCNE4	2	223917614	Frame_Shift_Del	DEL	GT	TCGA-A8-A07U-01A-11W-A050-09	10	223917614	19281759	5	11040	133	2								
NUP210	0	genome.wustl.edu	37	chr3	13364912	13364912	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	aggtgacgggccatgatcctCtgagggacgctgaccaccac	13	13	1	4			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	3	13364912	13364912	C	T	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	silent	c.4665	p.Q1555	0.944	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	124	0	0	97	14	12.61	-	-	-	T	13364912	C	T	13364912	2	4	178	1	0	0	0	0	0	0	0	1	10833	912	32	2		2	NUP210	3	13364912	Silent	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		13364912	184657518	6	11041										
TEX264	0	genome.wustl.edu	37	chr3	51737809	51737809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	tggcagccgggagacttcagCtgccacactgtcacctgggg	14	13	2	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	3	51737809	51737809	C	T	SNP	TEX264	ENST00000341333	human	ensembl	69_37n	1	known	missense	c.719	p.A240V	0.921	NULL	superfamily_Reg_factor_effector_bac	-	no_errors	TEX264	HGNC	ENSG00000164081	41	0	0	33	20	37.74	-	-	-	T	51737809	C	T	51737809	3	4	178	1	0	0	0	0	1	0	0	0	15878	797	28	4	733	4	TEX264	3	51737809	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09	38372897	51737809	146284621	7	11042										
CLSTN2	0	genome.wustl.edu	37	chr3	140122491	140122491	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gggaaatctgtgcgttcaagAtccatggccaggagctgccc	13	11	2	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	3	140122491	140122491	A	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.253	p.I85F	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	134	0	0	216	51	19.1	-	-	-	T	140122491	A	T	140122491	3	4	178	1	0	0	0	0	1	0	0	0	3592	333	12	5	263	5	CLSTN2	3	140122491	Missense_Mutation	SNP	A	TCGA-A8-A07U-01A-11W-A050-09	88384682	140122491	57899939	8	11043										
TPRG1	0	genome.wustl.edu	37	chr3	188925280	188925280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	atcgatggaggaagaggaccCgatgccaagacagatttcaa	12	8	1	3			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	3	188925280	188925280	C	T	SNP	TPRG1	ENST00000345063	human	ensembl	69_37n	1	known	missense	c.107	p.P36L	0.001	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001	250	0	0	270	61	18.43	-	-	-	T	188925280	C	T	188925280	3	4	178	1	0	0	0	0	1	0	0	0	16514	652	23	1	109	1	TPRG1	3	188925280	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09	48802789	188925280	9097150	9	11044										
PCDHB10	0	genome.wustl.edu	37	chr5	140574447	140574447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ttcttgaaaccagttatttcGgatattcaggcacagggccc	9	10	2	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	5	140574447	140574447	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	silent	c.2322	p.S774	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	74	0	0	48	9	15.52	-	-	-	A	140574447	G	A	140574447	2	1	178	1	0	0	0	0	0	0	0	1	11608	1103	39	1		1	PCDHB10	5	140574447	Silent	SNP	G	TCGA-A8-A07U-01A-11W-A050-09		140574447	40340813	10	11045										
DDR1	0	genome.wustl.edu	37	chr6	30864625	30864625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gcttcaaggagaagcttggcGagggccagtttggggaggta	18	6	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	6	30864625	30864625	G	C	SNP	DDR1	ENST00000376575	human	ensembl	69_37n	1	known	missense	c.1852	p.E618Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	63	0	0	40	9	18.37	-	-	-	C	30864625	G	C	30864625	3	2	178	1	0	0	0	0	1	0	0	0	4367	1059	37	3	1898	3	DDR1	6	30864625	Missense_Mutation	SNP	G	TCGA-A8-A07U-01A-11W-A050-09		30864625	140250442	11	11046										
PPARD	0	genome.wustl.edu	37	chr6	35392419	35392419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cggcagtggctttgtcacccGtgagttcctgcgcagcctcc	12	15	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	6	35392419	35392419	G	A	SNP	PPARD	ENST00000311565	human	ensembl	69_37n	1	known	missense	c.941	p.R314H	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033	92	0	0	66	17	20.48	-	-	-	A	35392419	G	A	35392419	3	1	178	1	0	0	0	0	1	0	0	0	12371	1145	40	1	976	1	PPARD	6	35392419	Missense_Mutation	SNP	G	TCGA-A8-A07U-01A-11W-A050-09	4527794	35392419	135722648	12	11047										
TULP4	0	genome.wustl.edu	37	chr6	158924160	158924160	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	aaactgtcctctctgatgctGagtcagggccagcacctgga	11	12	2	2			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	6	158924160	158924160	G	C	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.3465	p.L1155	0.965	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	58	0	0	38	6	13.64	-	-	-	C	158924160	G	C	158924160	2	2	178	1	0	0	0	0	0	0	0	1	16873	1277	45	2		2	TULP4	6	158924160	Silent	SNP	G	TCGA-A8-A07U-01A-11W-A050-09	123531741	158924160	12190907	13	11048										
PTPN12	0	genome.wustl.edu	37	chr7	77210798	77210798	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	tccttcacaagattcagactAtatcaatgcaaattttataa	3	8	3	2			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	7	77210798	77210798	A	T	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	missense	c.263	p.Y88F	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	88	0	0	86	17	16.35	-	-	-	T	77210798	A	T	77210798	3	4	178	1	0	0	0	0	1	0	0	0	12862	449	16	5	273	5	PTPN12	7	77210798	Missense_Mutation	SNP	A	TCGA-A8-A07U-01A-11W-A050-09		77210798	81927865	14	11049										
GALNT11	0	genome.wustl.edu	37	chr7	151800318	151800318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	tcatagaccgcacgccagcaCacctgcttcatgagatcatc	7	15	3	2			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	7	151800318	151800318	C	T	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	missense	c.541	p.H181Y	0.285	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234	138	0	0	162	61	27.23	-	-	-	T	151800318	C	T	151800318	3	4	178	1	0	0	0	0	1	0	0	0	6259	478	17	4	551	4	GALNT11	7	151800318	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09	74589520	151800318	7338345	15	11050										
VCPIP1	0	genome.wustl.edu	37	chr8	67579088	67579089	+	Frame_Shift_Ins	INS	-	-	C													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cggtctctccgcttcaaaagINScccccccgaagcagccgccg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	8	67579088	67579089	-	C	INS	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	frame_shift_ins	c.106_105	p.L35fs	1.000:0.991	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	16	0	0	23	3	11.54	-	-	-	C	67579089	-	C	67579088	7	5	178	1	0	1	1	0	0	0	0	0	17238	971	34	0	3574	0	VCPIP1	8	67579088	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09		67579088	78784934	16	11051										
PSTK	0	genome.wustl.edu	37	chr10	124745960	124745961	+	Frame_Shift_Ins	INS	-	-	C													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	taggaagatcttttgagccgINSaatataaaatgtgagtgaaa							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	10	124745960	124745961	-	C	INS	PSTK	ENST00000405485	human	ensembl	69_37n	1	known	frame_shift_ins	c.852_853	p.N284fs	0.000:0.000	NULL	pfam_Chromatin_KTI12,tigrfam_L-seryl-tRNA_Sec_kinase_euk	-	no_errors	PSTK	HGNC	ENSG00000179988	34	0	0	38	10	20.83	-	-	-	C	124745961	-	C	124745960	7	5	178	1	0	1	1	0	0	0	0	0	12800	1073	37	0		0	PSTK	10	124745960	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09		124745960	10788787	17	11052										
CREB3L1	0	genome.wustl.edu	37	chr11	46341932	46341932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	aatcaaccccggggggccggCagagcagcggccccgggacc	16	16	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	11	46341932	46341932	C	T	SNP	CREB3L1	ENST00000288400	human	ensembl	69_37n	1	known	missense	c.1376	p.A459V	0.003	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB3L1	HGNC	ENSG00000157613	124	0	0	158	74	31.9	-	-	-	T	46341932	C	T	46341932	3	4	178	1	0	0	0	0	1	0	0	0	3886	710	25	4	1418	4	CREB3L1	11	46341932	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		46341932	88664584	18	11053										
ANKK1	0	genome.wustl.edu	37	chr11	113269854	113269855	+	Frame_Shift_Ins	INS	-	-	CA													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ctggcccacgaggtagacgtINSggactgccagacggcctctg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	11	113269854	113269855	-	CA	INS	ANKK1	ENST00000303941	human	ensembl	69_37n	1	known	frame_shift_ins	c.1163_1164	p.D389fs	0.130:0.247	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ANKK1	HGNC	ENSG00000170209	61	0	0	41	163	79.9	-	-	-	CA	113269855	-	CA	113269854	7	5	178	1	0	1	1	0	0	0	0	0	631	1696	59	0	1193	0	ANKK1	11	113269854	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09	66927922	113269854	21736662	19	11054										
POC1B	0	genome.wustl.edu	37	chr12	89818991	89818991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ctctaaagcatcagtcacagCgagaggtatgctcctttgac	9	11	3	2			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	12	89818991	89818991	C	A	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	missense	c.1279	p.A427S	0.529	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1B	HGNC	ENSG00000139323	286	0	0	258	48	15.58	-	-	-	A	89818991	C	A	89818991	3	1	178	1	0	0	0	0	1	0	0	0	12250	768	27	3	165	3	POC1B	12	89818991	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		89818991	44032904	20	11055										
SKA3	0	genome.wustl.edu	37	chr13	21742333	21742333	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ggctcttccttatagttgttCactgcctgtggagggtttgg	13	8	2	0			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	13	21742333	21742333	C	A	SNP	SKA3	ENST00000314759	human	ensembl	69_37n	-1	known	silent	c.537	p.V179	0.000	NULL	NULL	-	no_errors	SKA3	HGNC	ENSG00000165480	105	0	0	133	17	11.33	-	-	-	A	21742333	C	A	21742333	2	1	178	1	0	0	0	0	0	0	0	1	14443	813	29	2		2	SKA3	13	21742333	Silent	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		21742333	93427545	21	11056										
PGF	0	genome.wustl.edu	37	chr14	75421872	75421873	+	Frame_Shift_Ins	INS	-	-	G													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ggtgggggtagctcttacctINSgggggggcacagcaggcagc							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	14	75421872	75421873	-	G	INS	PGF	ENST00000405431	human	ensembl	69_37n	-1	known	frame_shift_ins	c.74_73	p.Q25fs	0.671:0.473	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PGF	HGNC	ENSG00000119630	20	0	0	19	3	13.64	-	-	-	G	75421873	-	G	75421872	7	5	178	1	0	1	1	0	0	0	0	0	11862	1594	55	0	466	0	PGF	14	75421872	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09		75421872	31927668	22	11057										
ISLR2	0	genome.wustl.edu	37	chr15	74425335	74425335	+	Frame_Shift_Del	DEL	G	G	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gtcacacaggtcacgtcgctGtggctggcgcacaatgaggt							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	15	74425335	74425335	G	-	DEL	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	frame_shift_del	c.240	p.W81fs	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	62	0	0	52	23	30.26	-	-	-	-	74425335	G	-	74425335	7	5	178	1	0	1	0	1	0	0	0	0	7913	1364	48	0	242	0	ISLR2	15	74425335	Frame_Shift_Del	DEL	G	TCGA-A8-A07U-01A-11W-A050-09		74425335	28106057	23	11058										
MEFV	0	genome.wustl.edu	37	chr16	3293331	3293331	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ctctgtagtccacgaagatgCccacacgcttgggaggctcc	11	14	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	16	3293331	3293331	C	A	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.2156	p.G719V	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	80	0	0	79	12	13.04	-	-	-	A	3293331	C	A	3293331	3	1	178	1	0	0	0	0	1	0	0	0	9530	739	26	4	193	4	MEFV	16	3293331	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		3293331	87061422	24	11059										
TBC1D10B	0	genome.wustl.edu	37	chr16	30380863	30380863	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gaggggcctgtgccagggccTgaggggtcctcaggagcctg	19	11	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	16	30380863	30380863	T	G	SNP	TBC1D10B	ENST00000409939	human	ensembl	69_37n	-1	known	silent	c.642	p.S214	0.001	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	33	0	0	29	12	28.57	-	-	-	G	30380863	T	G	30380863	2	3	178	1	0	0	0	0	0	0	0	1	15691	1567	55	5		5	TBC1D10B	16	30380863	Silent	SNP	T	TCGA-A8-A07U-01A-11W-A050-09	27087532	30380863	59973890	25	11060										
TP53	0	genome.wustl.edu	37	chr17	7576863	7576863	+	Frame_Shift_Del	DEL	A	A	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gacttagtacctgaagggtgAaatattctccatccagtggt							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	17	7576863	7576863	A	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.983	p.F328fs	1.000	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	329	0	0	310	41	11.58	-	-	-	-	7576863	A	-	7576863	7	5	178	1	0	1	0	1	0	0	0	0	16477	246	9	0	299	0	TP53	17	7576863	Frame_Shift_Del	DEL	A	TCGA-A8-A07U-01A-11W-A050-09		7576863	73618347	26	11061										
EFCAB5	0	genome.wustl.edu	37	chr17	28419935	28419935	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gtggaagttaatgtacagctTattgatgaatatatcagagg	11	3	1	3			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	17	28419935	28419935	T	G	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	silent	c.4302	p.L1434	0.163	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	148	0	0	237	66	21.71	-	-	-	G	28419935	T	G	28419935	2	3	178	1	0	0	0	0	0	0	0	1	4973	1741	61	5		5	EFCAB5	17	28419935	Silent	SNP	T	TCGA-A8-A07U-01A-11W-A050-09	20843072	28419935	52775275	27	11062										
CACNA1G	0	genome.wustl.edu	37	chr17	48669336	48669336	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	tggaacaaagtcctctacaaTggtatggcctccacgtcgtc	9	12	1	0			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	17	48669336	48669336	T	G	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.2793	p.N931K	0.993	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	272	0	0	101	12	10.62	-	-	-	G	48669336	T	G	48669336	3	3	178	1	0	0	0	0	1	0	0	0	2569	1461	51	5	2843	5	CACNA1G	17	48669336	Missense_Mutation	SNP	T	TCGA-A8-A07U-01A-11W-A050-09	20249401	48669336	32525874	28	11063										
C17orf70	0	genome.wustl.edu	37	chr17	79514514	79514516	+	In_Frame_Del	DEL	TGT	TGT	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gtccaggctgaagctgctgcTgttctctagcacgcaggtgg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	17	79514514	79514516	TGT	-	DEL	C17orf70	ENST00000327787	human	ensembl	69_37n	-1	known	in_frame_del	c.1594_1592	p.N531in_frame_del	0.000:0.228:0.951	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504	18	0	0	11	27	69.23	-	-	-	-	79514516	TGT	-	79514514	7	5	178	1	0	1	0	1	0	0	0	0	1892	1580	55	0	1071	0	C17orf70	17	79514514	In_Frame_Del	DEL	TGT	TCGA-A8-A07U-01A-11W-A050-09	30845178	79514514	1680696	29	11064										
CCDC57	0	genome.wustl.edu	37	chr17	80159705	80159705	+	Frame_Shift_Del	DEL	G	G	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cctcctccagctggctccgtGtgtcctgcagagccgcctcc							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	17	80159705	80159705	G	-	DEL	CCDC57	ENST00000389641	human	ensembl	69_37n	-1	known	frame_shift_del	c.116	p.T39fs	0.002	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155	31	0	0	25	12	32.43	-	-	-	-	80159705	G	-	80159705	7	5	178	1	0	1	0	1	0	0	0	0	2854	1377	48	0	2695	0	CCDC57	17	80159705	Frame_Shift_Del	DEL	G	TCGA-A8-A07U-01A-11W-A050-09	645191	80159705	1035505	30	11065										
TXNL1	0	genome.wustl.edu	37	chr18	54291576	54291576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gggtcattttctaagtgctgCttgattttttcttctaatcc	7	8	4	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	18	54291576	54291576	C	T	SNP	TXNL1	ENST00000586262	human	ensembl	69_37n	-1	novel	missense	c.299	p.S100N	0.998	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_PITH_dom,pfam_Thioredoxin_domain,superfamily_Galactose-bd-like,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TXNL1	HGNC	ENSG00000091164	154	0	0	199	30	13.04	-	-	-	T	54291576	C	T	54291576	3	4	178	1	0	0	0	0	1	0	0	0	16901	796	28	4	581	4	TXNL1	18	54291576	Missense_Mutation	SNP	C	TCGA-A8-A07U-01A-11W-A050-09		54291576	23785672	31	11066										
SLC1A6	0	genome.wustl.edu	37	chr19	15061145	15061145	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	tcccgctgagacaagtgctcGatgacggccgctccaattga	11	13	0	3			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	19	15061145	15061145	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	silent	c.1557	p.I519	0.965	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	49	0	0	36	10	21.74	-	-	-	A	15061145	G	A	15061145	2	1	178	1	0	0	0	0	0	0	0	1	14525	1048	37	1		1	SLC1A6	19	15061145	Silent	SNP	G	TCGA-A8-A07U-01A-11W-A050-09		15061145	44067838	32	11067										
SLC5A5	0	genome.wustl.edu	37	chr19	17986885	17986886	+	Frame_Shift_Ins	INS	-	-	T													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cgccaggtgctcacgctggcINSccagaaccactcccggatca							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	19	17986885	17986886	-	T	INS	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	frame_shift_ins	c.668_669	p.Q224fs	1.000:0.997	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	93	0	0	94	33	25.98	-	-	-	T	17986886	-	T	17986885	7	5	178	1	0	1	1	0	0	0	0	0	14757	739	26	0	686	0	SLC5A5	19	17986885	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09	2925740	17986885	41142098	33	11068										
CD22	0	genome.wustl.edu	37	chr19	35835800	35835800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	gcctcgccatcctcatcctgGcaatctgtgggctcaagctc	9	16	3	0			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	19	35835800	35835800	G	T	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	missense	c.2104	p.A702S	0.524	NULL	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	115	0	0	390	79	16.77	-	-	-	T	35835800	G	T	35835800	3	4	178	1	0	0	0	0	1	0	0	0	3014	1203	42	4	2138	4	CD22	19	35835800	Missense_Mutation	SNP	G	TCGA-A8-A07U-01A-11W-A050-09	17848915	35835800	23293183	34	11069										
ZNF649	0	genome.wustl.edu	37	chr19	52400227	52400227	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	ccacatcctccagggtcagtGattcctgtaataacacagtc	7	13	1	1			TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	19	52400227	52400227	G	A	SNP	ZNF649	ENST00000354957	human	ensembl	69_37n	-1	known	missense	c.20	p.S7L	0.002	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093	275	0	0	291	66	18.44	-	-	-	A	52400227	G	A	52400227	3	1	178	1	0	0	0	0	1	0	0	0	18160	1294	45	2	1509	2	ZNF649	19	52400227	Missense_Mutation	SNP	G	TCGA-A8-A07U-01A-11W-A050-09	16564427	52400227	6728756	35	11070										
LAMA5	0	genome.wustl.edu	37	chr20	60902386	60902387	+	Frame_Shift_Ins	INS	-	-	G													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	caggtctgcacggagcatctINSccgtccctggctgccgctcg							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	20	60902386	60902387	-	G	INS	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5015_5014	p.E1672fs	0.007:0.008	pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	11	0	0	6	3	33.33	-	-	-	G	60902387	-	G	60902386	7	5	178	1	0	1	1	0	0	0	0	0	8663	1551	54	0	6244	0	LAMA5	20	60902386	Frame_Shift_Ins	INS	-	TCGA-A8-A07U-01A-11W-A050-09		60902386	2123134	36	11071	134	2								
LAMA5	0	genome.wustl.edu	37	chr20	60902395	60902395	+	Frame_Shift_Del	DEL	G	G	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	cacggagcatctccgtccctGgctgccgctcgtggggcacc							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	20	60902395	60902395	G	-	DEL	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	frame_shift_del	c.5006	p.P1669fs	0.000	pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	9	0	0	2	3	60	-	-	-	-	60902395	G	-	60902395	7	5	178	1	0	1	0	1	0	0	0	0	8663	1348	47	0	6253	0	LAMA5	20	60902395	Frame_Shift_Del	DEL	G	TCGA-A8-A07U-01A-11W-A050-09	9	60902395	2123125	37	11072	134	2								
MUM1L1	0	genome.wustl.edu	37	chrX	105449533	105449535	+	In_Frame_Del	DEL	TCT	TCT	-													0.114285714285714	4	0.310822308978064	2.17582417582418	3.53571428571429	1.92857142857143	0.523809523809524	1	0	aagaggaaaaaggcattttcTctagaagttcaaatactctc							TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6409415-8453-489d-a731-49257cade2a3	bd1d1390-403b-4e65-9ecc-430b52d2f8af	X	105449533	105449535	TCT	-	DEL	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	in_frame_del	c.108_110	p.L37in_frame_del	0.001:0.047:0.086	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	63	0	0	49	90	64.75	-	-	-	-	105449535	TCT	-	105449533	7	5	178	1	0	1	0	1	0	0	0	0	10058	1538	54	0	110	0	MUM1L1	23	105449533	In_Frame_Del	DEL	TCT	TCGA-A8-A07U-01A-11W-A050-09		105449533	49821027	38	11073										
TNFRSF9	0	genome.wustl.edu	37	chr1	7995128	7995128	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gatgctcccggagagaggtcGgctggagatggtccacagac	16	10	0	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	7995128	7995128	G	A	SNP	TNFRSF9	ENST00000377507	human	ensembl	69_37n	-1	known	silent	c.489	p.A163	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	36	0	0	74	14	15.91	-	-	-	A	7995128	G	A	7995128	2	1	179	1	0	0	0	0	0	0	0	1	16395	1103	39	1		1	TNFRSF9	1	7995128	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		7995128	241255493	1	11074										
SPEN	0	genome.wustl.edu	37	chr1	16258804	16258804	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtgggcccccaaataggcgtGaaagagagctccatggaacc	13	11	0	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	16258804	16258804	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.6069	p.V2023	0.013	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	130	0	0	177	23	11.5	-	-	-	C	16258804	G	C	16258804	2	2	179	1	0	0	0	0	0	0	0	1	15129	1277	45	2		2	SPEN	1	16258804	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	8263676	16258804	232991817	2	11075										
XKR8	0	genome.wustl.edu	37	chr1	28293114	28293114	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tccaagccgctcctgggcctGggctcctccgtgatctactt	10	16	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	28293114	28293114	G	C	SNP	XKR8	ENST00000373884	human	ensembl	69_37n	1	known	silent	c.591	p.L197	0.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR8	HGNC	ENSG00000158156	47	0	0	44	7	13.46	-	-	-	C	28293114	G	C	28293114	2	2	179	1	0	0	0	0	0	0	0	1	17534	1335	47	4		4	XKR8	1	28293114	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	12034310	28293114	220957507	3	11076										
GMEB1	0	genome.wustl.edu	37	chr1	29041080	29041080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	catggagtccggcctaacctCggcaattcaggctgttgaaa	11	11	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	29041080	29041080	C	T	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	1	known	missense	c.1517	p.S506L	0.964	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	55	0	0	90	18	16.67	-	-	-	T	29041080	C	T	29041080	3	4	179	1	0	0	0	0	1	0	0	0	6539	893	31	1	1551	1	GMEB1	1	29041080	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	747966	29041080	220209541	4	11077										
MACF1	0	genome.wustl.edu	37	chr1	39823076	39823076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	caagaattgctgtcccagcaGcaaaatttcattctggccac	7	12	2	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	39823076	39823076	G	A	SNP	MACF1	ENST00000372925	human	ensembl	69_37n	1	novel	missense	c.2668	p.A890T	1.000	NULL	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MACF1	HGNC	ENSG00000127603	105	0	0	205	26	11.26	-	-	-	A	39823076	G	A	39823076	3	1	179	1	0	0	0	0	1	0	0	0	9211	962	34	4	11577	4	MACF1	1	39823076	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	10781996	39823076	209427545	5	11078										
NBPF9	0	genome.wustl.edu	37	chr1	144823901	144823901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	caactccttcaggttgtcttGaactgactgactcatgccag	8	12	3	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	144823901	144823901	G	C	SNP	NBPF9	ENST00000281815	human	ensembl	69_37n	1	known	missense	c.223	p.E75Q	0.003	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF9	HGNC	ENSG00000168614	201	0	0	457	62	11.95	-	-	-	C	144823901	G	C	144823901	3	2	179	1	0	0	0	0	1	0	0	0	10271	1291	45	2	1994	2	NBPF9	1	144823901	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	105000825	144823901	104426720	6	11079										
RAB25	0	genome.wustl.edu	37	chr1	156038184	156038184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gaagccacgatcgtcgtcatGctcgtgggtaacaaaagtga	12	9	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	156038184	156038184	G	A	SNP	RAB25	ENST00000361084	human	ensembl	69_37n	1	known	missense	c.363	p.M121I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB25	HGNC	ENSG00000132698	97	0	0	143	23	13.86	-	-	-	A	156038184	G	A	156038184	3	1	179	1	0	0	0	0	1	0	0	0	12995	1319	46	4	373	4	RAB25	1	156038184	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	11214283	156038184	93212437	7	11080										
HHAT	0	genome.wustl.edu	37	chr1	210637883	210637883	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gcccaggtgctctttttctaCgtgaagtacttggtgctctt	10	10	3	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	1	210637883	210637883	C	T	SNP	HHAT	ENST00000391905	human	ensembl	69_37n	1	known	silent	c.891	p.Y297	0.950	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392	151	1	0.65	174	216	55.38	-	-	-	T	210637883	C	T	210637883	2	4	179	1	0	0	0	0	0	0	0	1	7140	547	19	1		1	HHAT	1	210637883	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	54599699	210637883	38612738	8	11081										
DPYSL5	0	genome.wustl.edu	37	chr2	27164906	27164906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cctgtatccccgcaagggccGcattattcccggagccgatg	11	15	0	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	27164906	27164906	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	missense	c.1178	p.R393H	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	78	0	0	118	17	12.59	-	-	-	A	27164906	G	A	27164906	3	1	179	1	0	0	0	0	1	0	0	0	4785	1087	38	1	1212	1	DPYSL5	2	27164906	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		27164906	216034467	9	11082										
CLEC4F	0	genome.wustl.edu	37	chr2	71036922	71036922	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	catctgtccagcgccaggagCcctctgtgcccctgtcagtg	11	16	3	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	71036922	71036922	C	A	SNP	CLEC4F	ENST00000272367	human	ensembl	69_37n	-1	known	missense	c.1607	p.G536V	0.068	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672	125	0	0	245	36	12.81	-	-	-	A	71036922	C	A	71036922	3	1	179	1	0	0	0	0	1	0	0	0	3546	739	26	4	170	4	CLEC4F	2	71036922	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	43872016	71036922	172162451	10	11083										
NXPH2	0	genome.wustl.edu	37	chr2	139429217	139429217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ctccgtggcatgcaccacttCcttactgtcacaaaatagct	6	14	1	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	139429217	139429217	C	T	SNP	NXPH2	ENST00000272641	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	0.004	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH2	HGNC	ENSG00000144227	245	0	0	231	33	12.5	-	-	-	T	139429217	C	T	139429217	3	4	179	1	0	0	0	0	1	0	0	0	10864	864	30	2	728	2	NXPH2	2	139429217	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	68392295	139429217	103770156	11	11084										
KIAA1715	0	genome.wustl.edu	37	chr2	176829238	176829238	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gatatcacagtcttacctttGctttctttgagtccggatca	7	10	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	176829238	176829238	G	C	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	missense	c.437	p.A146G	1.000	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	201	0	0	253	38	13.06	-	-	-	C	176829238	G	C	176829238	3	2	179	1	0	0	0	0	1	0	0	0	8306	1319	46	4	877	4	KIAA1715	2	176829238	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	37400021	176829238	66370135	12	11085										
TFPI	0	genome.wustl.edu	37	chr2	188331770	188331770	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tgatattctttggatgaaacCtataagaggaagaggaataa	10	3	1	4			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	188331770	188331770	C	G	SNP	TFPI	ENST00000233156	human	ensembl	69_37n	-1	known	splice_site	c.809-1	e7-1	0.993	-	-	-	no_errors	TFPI	HGNC	ENSG00000003436	145	0	0	116	26	18.31	-	-	-	G	188331770	C	G	188331770	5	3	179	1	0	0	0	0	0	0	1	0	15903	695	24	4	110	4	TFPI	2	188331770	Splice_Site	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	11502532	188331770	54867603	13	11086										
FASTKD2	0	genome.wustl.edu	37	chr2	207636961	207636961	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	acatattgcagtcctgcaaaGacctccagtaccataatttg	6	11	0	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	2	207636961	207636961	G	C	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.1171	p.D391H	1.000	NULL	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	219	0	0	286	32	10.06	-	-	-	C	207636961	G	C	207636961	3	2	179	1	0	0	0	0	1	0	0	0	5732	942	33	2	1189	2	FASTKD2	2	207636961	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	19305191	207636961	35562412	14	11087										
TBC1D5	0	genome.wustl.edu	37	chr3	17202622	17202622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tttcccagaggtgcttctgaGggtgcgaagaggctgggcct	16	9	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	17202622	17202622	G	T	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	missense	c.2221	p.L741I	0.811	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	36	0	0	39	7	15.22	-	-	-	T	17202622	G	T	17202622	3	4	179	1	0	0	0	0	1	0	0	0	15718	1000	35	4	170	4	TBC1D5	3	17202622	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		17202622	180819808	15	11088										
STX19	0	genome.wustl.edu	37	chr3	93733777	93733777	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tgactttttaacttctttaaCtaaatcattcaaacttctgt	2	8	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	93733777	93733777	C	G	SNP	STX19	ENST00000315099	human	ensembl	69_37n	-1	known	missense	c.337	p.V113L	0.841	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750	303	1	0.33	479	78	13.95	-	-	-	G	93733777	C	G	93733777	3	3	179	1	0	0	0	0	1	0	0	0	15433	565	20	4	551	4	STX19	3	93733777	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	76531155	93733777	104288653	16	11089										
ROPN1B	0	genome.wustl.edu	37	chr3	125690996	125690996	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgggcgcagccgcaggacctCatccagtggggggccgagta	17	13	1	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	125690996	125690996	C	T	SNP	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	silent	c.99	p.L33	0.989	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	61	0	0	68	8	10.53	-	-	-	T	125690996	C	T	125690996	2	4	179	1	0	0	0	0	0	0	0	1	13610	813	29	2		2	ROPN1B	3	125690996	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	31957219	125690996	72331434	17	11090										
ROPN1B	0	genome.wustl.edu	37	chr3	125694476	125694476	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ctgagcgagtcgctttgtgtAactgggcagagctaacacct	12	10	0	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	125694476	125694476	A	T	SNP	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	missense	c.187	p.N63Y	0.995	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	110	0	0	106	14	11.67	-	-	-	T	125694476	A	T	125694476	3	4	179	1	0	0	0	0	1	0	0	0	13610	362	13	5	193	5	ROPN1B	3	125694476	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	3480	125694476	72327954	18	11091										
P2RY1	0	genome.wustl.edu	37	chr3	152554273	152554273	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtccccttggtgctgattctGggctgttacggattaattgt	12	8	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	152554273	152554273	G	C	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	silent	c.702	p.L234	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	102	0	0	58	12	17.14	-	-	-	C	152554273	G	C	152554273	2	2	179	1	0	0	0	0	0	0	0	1	11419	1335	47	4		4	P2RY1	3	152554273	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	26859797	152554273	45468157	19	11092										
PLCH1	0	genome.wustl.edu	37	chr3	155199955	155199955	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tttctaaggccgctgtcttgGccttactagaaaggtcatca	9	10	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	155199955	155199955	G	C	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.3884	p.A1295G	0.865	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	159	0	0	186	57	23.46	-	-	-	C	155199955	G	C	155199955	3	2	179	1	0	0	0	0	1	0	0	0	12111	1203	42	4	1201	4	PLCH1	3	155199955	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	2645682	155199955	42822475	20	11093										
MCF2L2	0	genome.wustl.edu	37	chr3	182923992	182923992	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ttccaagctggcgaattgaaAgtgtcatcagctattataaa	8	7	2	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	182923992	182923992	A	T	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.2723	p.L908H	0.997	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	136	0	0	373	59	13.66	-	-	-	T	182923992	A	T	182923992	3	4	179	1	0	0	0	0	1	0	0	0	9451	72	3	5	649	5	MCF2L2	3	182923992	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	27724037	182923992	15098438	21	11094										
ECE2	0	genome.wustl.edu	37	chr3	183995195	183995195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cctgcccgatgggcgttctcGctggaacaccttcaacagcc	10	16	2	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	3	183995195	183995195	G	A	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	missense	c.773	p.R258H	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	20	0	0	14	15	50	-	-	-	A	183995195	G	A	183995195	3	1	179	1	0	0	0	0	1	0	0	0	4925	1087	38	1	1351	1	ECE2	3	183995195	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	1071203	183995195	14027235	22	11095										
SMARCA5	0	genome.wustl.edu	37	chr4	144460080	144460080	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	attggaatccccaagtagatCttcaggctatggtaagagat	10	7	2	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	4	144460080	144460080	C	A	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	missense	c.1759	p.L587I	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	250	1	0.4	359	52	12.65	-	-	-	A	144460080	C	A	144460080	3	1	179	1	0	0	0	0	1	0	0	0	14860	913	32	2	1809	2	SMARCA5	4	144460080	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		144460080	46694196	23	11096										
C6	0	genome.wustl.edu	37	chr5	41201759	41201759	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ttacattctctagtctcctgCttgctgcaaatctgttcaca	5	12	4	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	5	41201759	41201759	C	G	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.201	p.K67N	0.001	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	124	0	0	222	28	11.2	-	-	-	G	41201759	C	G	41201759	3	3	179	1	0	0	0	0	1	0	0	0	2336	796	28	4	2667	4	C6	5	41201759	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		41201759	139713501	24	11097										
GLRX	0	genome.wustl.edu	37	chr5	95152314	95152314	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgcctatacaatctttaccaAtaaagactcgaggcacctaa	5	12	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	5	95152314	95152314	A	G	SNP	GLRX	ENST00000237858	human	ensembl	69_37n	-1	known	missense	c.224	p.I75T	0.118	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	pfam_Glutaredoxin,pfam_Glutaredoxin-like,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX	HGNC	ENSG00000173221	119	0	0	97	110	53.14	-	-	-	G	95152314	A	G	95152314	3	3	179	1	0	0	0	0	1	0	0	0	6511	101	4	5	100	5	GLRX	5	95152314	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	53950555	95152314	85762946	25	11098										
ARAP3	0	genome.wustl.edu	37	chr5	141037949	141037949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cacccagctccccatgctcgCgaatctcaaaagtcacccac	5	19	2	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	5	141037949	141037949	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.3509	p.R1170H	0.100	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	132	0	0	74	69	47.92	-	-	-	T	141037949	C	T	141037949	3	4	179	1	0	0	0	0	1	0	0	0	842	768	27	1	1161	1	ARAP3	5	141037949	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	45885635	141037949	39877311	26	11099										
NEDD9	0	genome.wustl.edu	37	chr6	11191170	11191170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	catatgcgtcgttctgagagCccactgactgtccgagttgc	11	12	1	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	11191170	11191170	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.932	p.G311D	0.033	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	56	0	0	78	44	36.07	-	-	-	T	11191170	C	T	11191170	3	4	179	1	0	0	0	0	1	0	0	0	10385	739	26	4	1584	4	NEDD9	6	11191170	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		11191170	159923897	27	11100										
BRPF3	0	genome.wustl.edu	37	chr6	36198260	36198260	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtggaagacaccgtggacaaGctcaagatgctggaaggccg	15	9	1	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	36198260	36198260	G	A	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	silent	c.3492	p.K1164	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	97	0	0	89	47	34.56	-	-	-	A	36198260	G	A	36198260	2	1	179	1	0	0	0	0	0	0	0	1	1529	962	34	4		4	BRPF3	6	36198260	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	25007090	36198260	134916807	28	11101										
SLC17A5	0	genome.wustl.edu	37	chr6	74331662	74331662	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gattttaaaatgggtacccaCggcactgacttctgtgaaga	10	8	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	74331662	74331662	C	T	SNP	SLC17A5	ENST00000355773	human	ensembl	69_37n	-1	known	silent	c.843	p.P281	0.210	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899	77	0	0	108	14	11.48	-	-	-	T	74331662	C	T	74331662	2	4	179	1	0	0	0	0	0	0	0	1	14509	523	19	1		1	SLC17A5	6	74331662	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	38133402	74331662	96783405	29	11102										
CD109	0	genome.wustl.edu	37	chr6	74519742	74519742	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gggtgtcatcagagtccaaaCtttctgactcctggcagcca	10	12	3	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	74519742	74519742	C	G	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.3391	p.L1131V	0.372	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	67	0	0	76	13	14.61	-	-	-	G	74519742	C	G	74519742	3	3	179	1	0	0	0	0	1	0	0	0	2992	565	20	4	3497	4	CD109	6	74519742	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	188080	74519742	96595325	30	11103										
PM20D2	0	genome.wustl.edu	37	chr6	89871591	89871591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	atgccttgaatcatactgaaCagtacactgaagctgctggt	9	9	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	89871591	89871591	C	G	SNP	PM20D2	ENST00000275072	human	ensembl	69_37n	1	known	missense	c.1138	p.Q380E	0.970	pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281	142	0	0	175	24	12.06	-	-	-	G	89871591	C	G	89871591	3	3	179	1	0	0	0	0	1	0	0	0	12203	479	17	4	1160	4	PM20D2	6	89871591	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	15351849	89871591	81243476	31	11104										
ZBTB24	0	genome.wustl.edu	37	chr6	109803035	109803035	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	atttccccctcttctgcaaaCatcattgagaagtattcact	4	12	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	6	109803035	109803035	C	G	SNP	ZBTB24	ENST00000230122	human	ensembl	69_37n	-1	known	missense	c.195	p.M65I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365	98	0	0	49	10	16.95	-	-	-	G	109803035	C	G	109803035	3	3	179	1	0	0	0	0	1	0	0	0	17627	478	17	4	1972	4	ZBTB24	6	109803035	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	19931444	109803035	61312032	32	11105										
TMEM106B	0	genome.wustl.edu	37	chr7	12269421	12269421	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgcttaaacaacataaccatTattggtccacttgatatgaa	5	9	0	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	7	12269421	12269421	T	G	SNP	TMEM106B	ENST00000396667	human	ensembl	69_37n	1	known	missense	c.558	p.I186M	0.328	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460	153	0	0	145	18	11.04	-	-	-	G	12269421	T	G	12269421	3	3	179	1	0	0	0	0	1	0	0	0	16116	1742	61	5	572	5	TMEM106B	7	12269421	Missense_Mutation	SNP	T	TCGA-A8-A07W-01A-11W-A019-09		12269421	146869242	33	11106										
EXT1	0	genome.wustl.edu	37	chr8	119122327	119122327	+	Frame_Shift_Del	DEL	T	T	-													0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccagcccagacacttacttcTcatactcggtgttgtctctg							TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	8	119122327	119122327	T	-	DEL	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	frame_shift_del	c.959	p.E320fs	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	81	0	0	172	21	10.82	-	-	-	-	119122327	T	-	119122327	7	5	179	1	0	1	0	1	0	0	0	0	5360	1551	54	0	1325	0	EXT1	8	119122327	Frame_Shift_Del	DEL	T	TCGA-A8-A07W-01A-11W-A019-09		119122327	27241695	34	11107										
TYRP1	0	genome.wustl.edu	37	chr9	12695736	12695736	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tcaaaaagactttccttgggGtaggacaggaaagctttggt	12	6	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	9	12695736	12695736	G	C	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	missense	c.607	p.V203L	0.368	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	383	0	0	341	45	11.66	-	-	-	C	12695736	G	C	12695736	3	2	179	1	0	0	0	0	1	0	0	0	16913	1261	44	4	613	4	TYRP1	9	12695736	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		12695736	128517695	35	11108										
CNTLN	0	genome.wustl.edu	37	chr9	17502601	17502601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	actggaaaaaataaatgaaaAaaagaaactagttgaaggat	8	2	0	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	9	17502601	17502601	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.4172	p.K1391R	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	75	0	0	52	17	24.64	-	-	-	G	17502601	A	G	17502601	3	3	179	1	0	0	0	0	1	0	0	0	3669	14	1	5	4304	5	CNTLN	9	17502601	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	4806865	17502601	123710830	36	11109										
NCBP1	0	genome.wustl.edu	37	chr9	100418351	100418351	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgaagtttgtaagagaagttCtagaaaaatgtatgaggtaa	11	2	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	9	100418351	100418351	C	G	SNP	NCBP1	ENST00000375147	human	ensembl	69_37n	1	known	missense	c.1357	p.L453V	0.998	pfam_MIF4G-like_typ-1,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-2,pfam_MIF4G-like_typ-1,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	NCBP1	HGNC	ENSG00000136937	142	0	0	189	26	12.09	-	-	-	G	100418351	C	G	100418351	3	3	179	1	0	0	0	0	1	0	0	0	10283	912	32	2	1411	2	NCBP1	9	100418351	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	82915750	100418351	40795080	37	11110										
SVEP1	0	genome.wustl.edu	37	chr9	113245928	113245928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtaccttctccgagacctggAcgggaggtggagatctgcac	14	11	2	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	9	113245928	113245928	A	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.1976	p.V659A	0.986	pfam_Hyalin,pfscan_Hyalin	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	35	0	0	51	8	13.56	-	-	-	G	113245928	A	G	113245928	3	3	179	1	0	0	0	0	1	0	0	0	15511	275	10	5	8895	5	SVEP1	9	113245928	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	12827577	113245928	27967503	38	11111										
PAPPA	0	genome.wustl.edu	37	chr9	119106918	119106918	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	agcgaccgctaccacggtgcCcagtgtactgtgagctgccg	13	14	0	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	9	119106918	119106918	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	silent	c.3708	p.A1236	1.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	135	0	0	109	42	27.81	-	-	-	T	119106918	C	T	119106918	2	4	179	1	0	0	0	0	0	0	0	1	11505	610	22	4		4	PAPPA	9	119106918	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	5860990	119106918	22106513	39	11112										
MCM10	0	genome.wustl.edu	37	chr10	13237244	13237244	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	accaccaccaagaccaaaacTgagtgctttagcagaagcca	7	13	0	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	13237244	13237244	T	G	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.1952	p.L651R	1.000	pfam_Rep_factor_Mcm10	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	35	0	0	25	29	53.7	-	-	-	G	13237244	T	G	13237244	3	3	179	1	0	0	0	0	1	0	0	0	9456	1580	55	5	2002	5	MCM10	10	13237244	Missense_Mutation	SNP	T	TCGA-A8-A07W-01A-11W-A019-09		13237244	122297503	40	11113										
CACNB2	0	genome.wustl.edu	37	chr10	18828215	18828215	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cctatccgttctgcttcccaAgctgaagaagaacctagtgt	8	12	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	18828215	18828215	A	T	SNP	CACNB2	ENST00000324631	human	ensembl	69_37n	1	known	missense	c.1545	p.Q515H	0.363	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	65	0	0	114	22	16.18	-	-	-	T	18828215	A	T	18828215	3	4	179	1	0	0	0	0	1	0	0	0	2578	69	3	5	1909	5	CACNB2	10	18828215	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	5590971	18828215	116706532	41	11114										
MYO3A	0	genome.wustl.edu	37	chr10	26462784	26462784	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	aaaatgaataatgtgtatgaGgaagaggttaagcaagaatt	11	1	0	4			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	26462784	26462784	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.3591	p.E1197	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	179	0	0	240	34	12.36	-	-	-	A	26462784	G	A	26462784	2	1	179	1	0	0	0	0	0	0	0	1	10148	991	35	4		4	MYO3A	10	26462784	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	7634569	26462784	109071963	42	11115										
GAD2	0	genome.wustl.edu	37	chr10	26589870	26589870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tcctgattgaagaaatagaaCgccttggacaagatttataa	8	6	0	5			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	26589870	26589870	C	T	SNP	GAD2	ENST00000259271	human	ensembl	69_37n	1	known	missense	c.1738	p.R580C	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD2	HGNC	ENSG00000136750	229	0	0	205	152	42.58	-	-	-	T	26589870	C	T	26589870	3	4	179	1	0	0	0	0	1	0	0	0	6229	536	19	1	1800	1	GAD2	10	26589870	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	127086	26589870	108944877	43	11116										
PCDH15	0	genome.wustl.edu	37	chr10	55581735	55581735	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gttacttctgaagggcacatAgtttgaagttctgaaacatt	9	6	2	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	55581735	55581735	A	T	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	silent	c.5751	p.T1917	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	233	0	0	124	14	10.14	-	-	-	T	55581735	A	T	55581735	2	4	179	1	0	0	0	0	0	0	0	1	11584	407	15	5		5	PCDH15	10	55581735	Silent	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	28991865	55581735	79953012	44	11117										
CCAR1	0	genome.wustl.edu	37	chr10	70547978	70547978	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	aaatgttggcctcattgtgtAcaatggtgcaatggtagatg	12	5	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	70547978	70547978	A	C	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.3080	p.Y1027S	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	78	0	0	209	28	11.81	-	-	-	C	70547978	A	C	70547978	3	2	179	1	0	0	0	0	1	0	0	0	2755	391	14	5	3166	5	CCAR1	10	70547978	Missense_Mutation	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	14966243	70547978	64986769	45	11118										
PRF1	0	genome.wustl.edu	37	chr10	72358847	72358847	+	Frame_Shift_Del	DEL	G	G	-													0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gagataagcctgaggtaggcGggctgggtggaggcgttgaa							TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	72358847	72358847	G	-	DEL	PRF1	ENST00000318971	human	ensembl	69_37n	-1	known	frame_shift_del	c.630	p.A211fs	0.000	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_MACPF,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	PRF1	HGNC	ENSG00000180644	20	0	0	11	18	62.07	-	-	-	-	72358847	G	-	72358847	7	5	179	1	0	1	0	1	0	0	0	0	12559	1103	39	0	1041	0	PRF1	10	72358847	Frame_Shift_Del	DEL	G	TCGA-A8-A07W-01A-11W-A019-09	1810869	72358847	63175900	46	11119										
CDH23	0	genome.wustl.edu	37	chr10	73553339	73553339	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtcggcattgtggccaaggaCgacactgatcgcctggtgcc	14	12	0	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	73553339	73553339	C	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	silent	c.6663	p.D2221	0.135	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	49	0	0	50	10	16.67	-	-	-	T	73553339	C	T	73553339	2	4	179	1	0	0	0	0	0	0	0	1	3137	535	19	1		1	CDH23	10	73553339	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	1194492	73553339	61981408	47	11120										
IFIT3	0	genome.wustl.edu	37	chr10	91099111	91099111	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gagcagtttgttgaagaagcCttggaaaagtctccttgcca	11	8	1	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	91099111	91099111	C	A	SNP	IFIT3	ENST00000371811	human	ensembl	69_37n	1	known	silent	c.699	p.A233	0.004	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917	244	0	0	269	77	22.25	-	-	-	A	91099111	C	A	91099111	2	1	179	1	0	0	0	0	0	0	0	1	7578	668	24	4		4	IFIT3	10	91099111	Silent	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	17545772	91099111	44435636	48	11121										
CYP2C19	0	genome.wustl.edu	37	chr10	96609770	96609770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ctcgtcactttctggatgaaGgtggaaattttaagaaaagt	10	5	2	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	96609770	96609770	G	T	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.1246	p.G416C	0.064	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	338	0	0	530	69	11.52	-	-	-	T	96609770	G	T	96609770	3	4	179	1	0	0	0	0	1	0	0	0	4197	1000	35	4	1276	4	CYP2C19	10	96609770	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	5510659	96609770	38924977	49	11122										
HPS6	0	genome.wustl.edu	37	chr10	103825919	103825919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	agggcaaagtgatggtggctGccccacggcttggtctctcc	14	12	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	10	103825919	103825919	G	A	SNP	HPS6	ENST00000299238	human	ensembl	69_37n	1	known	missense	c.688	p.A230T	0.958	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189	34	0	0	25	4	13.79	-	-	-	A	103825919	G	A	103825919	3	1	179	1	0	0	0	0	1	0	0	0	7394	1319	46	4	690	4	HPS6	10	103825919	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	7216149	103825919	31708828	50	11123										
TSG101	0	genome.wustl.edu	37	chr11	18503191	18503191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	aaataccttcaggaagacatCcaggtctatcacgccccttc	6	14	3	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	11	18503191	18503191	C	T	SNP	TSG101	ENST00000251968	human	ensembl	69_37n	-1	known	missense	c.1069	p.D357N	1.000	pfam_Steadiness_box	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319	150	0	0	254	60	19.11	-	-	-	T	18503191	C	T	18503191	3	4	179	1	0	0	0	0	1	0	0	0	16712	855	30	2	111	2	TSG101	11	18503191	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		18503191	116503325	51	11124										
OR4S1	0	genome.wustl.edu	37	chr11	48328672	48328672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	aaaatgccatgaggaagctgTttagggtcaagaggagctta	13	5	1	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	11	48328672	48328672	T	C	SNP	OR4S1	ENST00000319988	human	ensembl	69_37n	1	known	missense	c.898	p.F300L	0.084	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	139	0	0	192	29	13.12	-	-	-	C	48328672	T	C	48328672	3	2	179	1	0	0	0	0	1	0	0	0	11155	1725	60	5	900	5	OR4S1	11	48328672	Missense_Mutation	SNP	T	TCGA-A8-A07W-01A-11W-A019-09	29825481	48328672	86677844	52	11125										
FZD4	0	genome.wustl.edu	37	chr11	86663462	86663462	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccgccgcatgggccaatgggGatgttgatcttctctgtgca	13	11	2	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	11	86663462	86663462	G	A	SNP	FZD4	ENST00000531380	human	ensembl	69_37n	-1	known	silent	c.336	p.I112	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804	152	0	0	34	58	63.04	-	-	-	A	86663462	G	A	86663462	2	1	179	1	0	0	0	0	0	0	0	1	6181	1164	41	2		2	FZD4	11	86663462	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	38334790	86663462	48343054	53	11126										
PCSK7	0	genome.wustl.edu	37	chr11	117098039	117098039	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	tcatagctaccctcagggctCtgaaatattttggaggtgac	10	9	3	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	11	117098039	117098039	C	T	SNP	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	splice_site	c.604-1	e3-1	1.000	-	-	-	no_errors	PCSK7	HGNC	ENSG00000160613	55	0	0	45	5	10	-	-	-	T	117098039	C	T	117098039	5	4	179	1	0	0	0	0	0	0	1	0	11678	927	32	2	1806	2	PCSK7	11	117098039	Splice_Site	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	30434577	117098039	17908477	54	11127										
NRXN3	0	genome.wustl.edu	37	chr14	79181294	79181294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgacctattcattgatgggcGcagcaagaacattcgacagc	10	11	1	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	14	79181294	79181294	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.1850	p.R617H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	83	0	0	62	34	35.42	-	-	-	A	79181294	G	A	79181294	3	1	179	1	0	0	0	0	1	0	0	0	10740	1087	38	1	747	1	NRXN3	14	79181294	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		79181294	28168246	55	11128										
FANCI	0	genome.wustl.edu	37	chr15	89850860	89850860	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gcaggtgaagctgtctggttCtcatctgacccccctgtgtt	11	12	3	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	15	89850860	89850860	C	G	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.3608	p.S1203C	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	119	0	0	179	32	15.17	-	-	-	G	89850860	C	G	89850860	3	3	179	1	0	0	0	0	1	0	0	0	5715	913	32	2	3738	2	FANCI	15	89850860	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		89850860	12680532	56	11129										
ZNF205	0	genome.wustl.edu	37	chr16	3170063	3170063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccaacctcatcgcgcacaacCgcacacacacaggcgagaag	8	17	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	16	3170063	3170063	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	69_37n	1	known	missense	c.1402	p.R468C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386	29	0	0	22	11	33.33	-	-	-	T	3170063	C	T	3170063	3	4	179	1	0	0	0	0	1	0	0	0	17860	652	23	1	1424	1	ZNF205	16	3170063	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		3170063	87184690	57	11130										
TP53	0	genome.wustl.edu	37	chr17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgctatctgagcagcgctcaTggtgggggcagcgcctcaca	14	13	3	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	17	7578394	7578394	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.536	p.H179R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0	26	50	65.79	-	-	-	C	7578394	T	C	7578394	3	2	179	1	0	0	0	0	1	0	0	0	16477	1464	51	5	762	5	TP53	17	7578394	Missense_Mutation	SNP	T	TCGA-A8-A07W-01A-11W-A019-09		7578394	73616816	58	11131										
MYH10	0	genome.wustl.edu	37	chr17	8396259	8396259	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgctggctcagggcctccgcGtccttcagaagcttcttctt	10	15	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	17	8396259	8396259	G	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	silent	c.4263	p.D1421	0.988	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	103	0	0	42	24	36.36	-	-	-	A	8396259	G	A	8396259	2	1	179	1	0	0	0	0	0	0	0	1	10102	1136	40	1		1	MYH10	17	8396259	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	817865	8396259	72798951	59	11132										
TNRC6C	0	genome.wustl.edu	37	chr17	76045634	76045634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	agagagcacagaaccacaaaCgtccacttctcagaatgtgt	8	11	1	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	17	76045634	76045634	C	T	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.491	p.T164M	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	272	0	0	377	51	11.92	-	-	-	T	76045634	C	T	76045634	3	4	179	1	0	0	0	0	1	0	0	0	16437	536	19	1	493	1	TNRC6C	17	76045634	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	67649375	76045634	5149576	60	11133										
MYO5B	0	genome.wustl.edu	37	chr18	47500828	47500828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	actgggcatagatgtgcttcGccagggcgttgcgcgcattg	15	10	0	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	18	47500828	47500828	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.1214	p.A405V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	252	0	0	226	84	27.01	-	-	-	A	47500828	G	A	47500828	3	1	179	1	0	0	0	0	1	0	0	0	10151	1087	38	1	4456	1	MYO5B	18	47500828	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		47500828	30576420	61	11134										
OR7A10	0	genome.wustl.edu	37	chr19	14952057	14952057	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	taagagtacaggatcccagtGaggggaccaccgcccagcag	13	12	0	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	19	14952057	14952057	G	T	SNP	OR7A10	ENST00000248058	human	ensembl	69_37n	-1	known	silent	c.633	p.L211	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A10	HGNC	ENSG00000127515	163	0	0	201	39	16.18	-	-	-	T	14952057	G	T	14952057	2	4	179	1	0	0	0	0	0	0	0	1	11287	1277	45	2		2	OR7A10	19	14952057	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		14952057	44176926	62	11135										
ZNF536	0	genome.wustl.edu	37	chr19	30936439	30936439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccgtgtccacaagcgggaccGcaagggcgaggaggatgggc	18	11	0	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	19	30936439	30936439	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.1970	p.R657H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	50	0	0	16	9	36	-	-	-	A	30936439	G	A	30936439	3	1	179	1	0	0	0	0	1	0	0	0	18070	1087	38	1	1972	1	ZNF536	19	30936439	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	15984382	30936439	28192544	63	11136										
PSG3	0	genome.wustl.edu	37	chr19	43242928	43242928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cctctagtcccatcacctcgCtttacgatgtgtaaggtgta	8	12	2	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	19	43242928	43242928	C	A	SNP	PSG3	ENST00000327495	human	ensembl	69_37n	-1	known	missense	c.378	p.K126N	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG3	HGNC	ENSG00000221826	1239	1	0.08	2042	279	12.01	-	-	-	A	43242928	C	A	43242928	3	1	179	1	0	0	0	0	1	0	0	0	12736	796	28	4	928	4	PSG3	19	43242928	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	12306489	43242928	15886055	64	11137										
ZNF28	0	genome.wustl.edu	37	chr19	53303907	53303907	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	atcctcttatgtctttcaagAtgtgatttgcgactgaaaac	7	8	3	3			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	19	53303907	53303907	A	G	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	silent	c.1191	p.H397	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	250	0	0	169	219	56.3	-	-	-	G	53303907	A	G	53303907	2	3	179	1	0	0	0	0	0	0	0	1	17909	330	12	5		5	ZNF28	19	53303907	Silent	SNP	A	TCGA-A8-A07W-01A-11W-A019-09	10060979	53303907	5825076	65	11138										
TGM6	0	genome.wustl.edu	37	chr20	2384311	2384311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	cgatggccccttcgtgtttgCggaggtcaacgccgactaca	12	13	1	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	20	2384311	2384311	C	T	SNP	TGM6	ENST00000202625	human	ensembl	69_37n	1	known	missense	c.1178	p.A393V	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948	44	0	0	38	7	15.56	-	-	-	T	2384311	C	T	2384311	3	4	179	1	0	0	0	0	1	0	0	0	15929	768	27	1	1212	1	TGM6	20	2384311	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		2384311	60641209	66	11139										
HAO1	0	genome.wustl.edu	37	chr20	7920978	7920978	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccaaagtttcttcatcatttGccccagacctgtaatagtca	5	12	4	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	20	7920978	7920978	G	C	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	missense	c.92	p.A31G	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	145	0	0	201	27	11.84	-	-	-	C	7920978	G	C	7920978	3	2	179	1	0	0	0	0	1	0	0	0	7002	1319	46	4	1052	4	HAO1	20	7920978	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	5536667	7920978	55104542	67	11140										
U2AF1	0	genome.wustl.edu	37	chr21	44513293	44513293	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ccacctccaccaccgccaccGccaccgccacgaccacggtc	6	25	0	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	21	44513293	44513293	G	A	SNP	U2AF1	ENST00000291552	human	ensembl	69_37n	-1	known	silent	c.642	p.G214	0.377	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201	50	0	0	37	6	13.04	-	-	-	A	44513293	G	A	44513293	2	1	179	1	0	0	0	0	0	0	0	1	16918	1074	38	1		1	U2AF1	21	44513293	Silent	SNP	G	TCGA-A8-A07W-01A-11W-A019-09		44513293	3616602	68	11141										
SUN2	0	genome.wustl.edu	37	chr22	39141808	39141809	+	Frame_Shift_Ins	INS	-	-	G													0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	agcccataggggtagaaataINSccaagcacctgtgcacaggg							TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	22	39141808	39141809	-	G	INS	SUN2	ENST00000216064	human	ensembl	69_37n	-1	known	frame_shift_ins	c.694_693	p.Y231fs	1.000:1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	18	0	0	13	6	31.58	-	-	-	G	39141809	-	G	39141808	7	5	179	1	0	1	1	0	0	0	0	0	15483	391	14	0	1503	0	SUN2	22	39141808	Frame_Shift_Ins	INS	-	TCGA-A8-A07W-01A-11W-A019-09		39141808	12162758	69	11142										
NLGN4X	0	genome.wustl.edu	37	chrX	5821686	5821686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gtctgggatgacgtcgccgtCgatcaccggcccgaaggcta	14	13	2	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	X	5821686	5821686	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.1093	p.D365N	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	93	0	0	50	8	13.79	-	-	-	T	5821686	C	T	5821686	3	4	179	1	0	0	0	0	1	0	0	0	10536	884	31	1	1425	1	NLGN4X	23	5821686	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09		5821686	149448874	70	11143										
MID1	0	genome.wustl.edu	37	chrX	10535323	10535323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	gttgggcccgctcactgatgCtttctggaacctgtcgatga	12	11	2	2			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	X	10535323	10535323	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.265	p.A89T	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	150	0	0	150	24	13.79	-	-	-	T	10535323	C	T	10535323	3	4	179	1	0	0	0	0	1	0	0	0	9647	797	28	4	1774	4	MID1	23	10535323	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	4713637	10535323	144735237	71	11144										
NHSL2	0	genome.wustl.edu	37	chrX	71360543	71360543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	acaccaagtgtcccgccaccGgcgatgacctgcaatcactt	8	16	1	1			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	X	71360543	71360543	G	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.3145	p.G1049S	0.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	91	0	0	54	27	33.33	-	-	-	A	71360543	G	A	71360543	3	1	179	1	0	0	0	0	1	0	0	0	10484	1116	39	1	3167	1	NHSL2	23	71360543	Missense_Mutation	SNP	G	TCGA-A8-A07W-01A-11W-A019-09	60825220	71360543	83910017	72	11145										
ENOX2	0	genome.wustl.edu	37	chrX	129804095	129804095	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	ctcccactcatacaggtcatCtcgagcctgtgcgaaatcaa	7	14	4	0			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	X	129804095	129804095	C	A	SNP	ENOX2	ENST00000338144	human	ensembl	69_37n	-1	known	missense	c.625	p.D209Y	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675	113	1	0.88	100	19	15.97	-	-	-	A	129804095	C	A	129804095	3	1	179	1	0	0	0	0	1	0	0	0	5164	913	32	2	1243	2	ENOX2	23	129804095	Missense_Mutation	SNP	C	TCGA-A8-A07W-01A-11W-A019-09	58443552	129804095	25466465	73	11146										
SPRY3	0	genome.wustl.edu	37	chrX	155004151	155004151	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0945945945945946	7	0.904872247913239	0.944907110826393	1.94539699287787	0.413396860986547	0.34984520123839	0.950412796697626	0	actgatgatgaagacaactgTgctgatgagccctgctcttg	11	9	1	6			TCGA-A8-A07W-01A-11W-A019-09	TCGA-A8-A07W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bc8dbab-c700-498c-8ff7-ccc62c911349	efeb884c-b13d-46ba-90b0-5b23593b53f3	X	155004151	155004151	T	A	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	nonsense	c.618	p.C206*	0.998	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	407	0	0	329	82	19.9	-	-	-	A	155004151	T	A	155004151	4	1	179	1	0	0	0	0	0	1	0	0	15198	1702	59	5	620	5	SPRY3	23	155004151	Nonsense_Mutation	SNP	T	TCGA-A8-A07W-01A-11W-A019-09	25200056	155004151	266409	74	11147										
ZNF362	0	genome.wustl.edu	37	chr1	33745932	33745933	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	cagggccacggcctgcttggINScccccccaagtccgaacgcg							TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	1	33745932	33745933	-	C	INS	ZNF362	ENST00000373428	human	ensembl	69_37n	1	known	frame_shift_ins	c.557_558	p.K189fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	28	0	0	29	4	12.12	-	-	-	C	33745933	-	C	33745932	7	5	180	1	0	1	1	0	0	0	0	0	17964	1203	42	0	571	0	ZNF362	1	33745932	Frame_Shift_Ins	INS	-	TCGA-A8-A07Z-01A-11W-A019-09		33745932	215504689	1	11148										
PDE1A	0	genome.wustl.edu	37	chr2	183099185	183099185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	tgttacgatgacagctgctgGatatgccaaaccaaccatat	8	10	0	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	2	183099185	183099185	G	A	SNP	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	missense	c.439	p.P147S	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252	154	0	0	148	22	12.87	-	-	-	A	183099185	G	A	183099185	3	1	180	1	0	0	0	0	1	0	0	0	11706	1174	41	2	1290	2	PDE1A	2	183099185	Missense_Mutation	SNP	G	TCGA-A8-A07Z-01A-11W-A019-09		183099185	60100188	2	11149										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	145	0	0	76	172	69.35	-	-	-	G	178952085	A	G	178952085	3	3	180	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A07Z-01A-11W-A019-09		178952085	19070345	3	11150										
CHRD	0	genome.wustl.edu	37	chr3	184102997	184102997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ctggaacgccagggcctcggCggctgctgaagggattctat	15	11	1	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	3	184102997	184102997	C	T	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	1	known	missense	c.1789	p.R597W	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	58	0	0	13	28	68.29	-	-	-	T	184102997	C	T	184102997	3	4	180	1	0	0	0	0	1	0	0	0	3401	759	27	1	1843	1	CHRD	3	184102997	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09	5150912	184102997	13919433	4	11151										
SLC4A4	0	genome.wustl.edu	37	chr4	72121014	72121014	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	gtcacaagagaaagacagggCacaaagaaaagaaggaaaag	12	5	1	4			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	4	72121014	72121014	C	A	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.151	p.H51N	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	288	1	0.35	85	239	73.54	-	-	-	A	72121014	C	A	72121014	3	1	180	1	0	0	0	0	1	0	0	0	14745	710	25	4	157	4	SLC4A4	4	72121014	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09		72121014	119033262	5	11152										
PCDHB16	0	genome.wustl.edu	37	chr5	140564268	140564268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	tgctcctgttcgtggcggtgCggctgtgcaggaggagcagg	19	9	0	0			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	5	140564268	140564268	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.2134	p.R712W	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	60	0	0	20	29	59.18	-	-	-	T	140564268	C	T	140564268	3	4	180	1	0	0	0	0	1	0	0	0	11614	759	27	1	2136	1	PCDHB16	5	140564268	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09		140564268	40350992	6	11153										
OR10C1	0	genome.wustl.edu	37	chr6	29408425	29408425	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ctcatcctctgcccctttggCctcatcctgggctcctacgg	8	18	3	0			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	6	29408425	29408425	C	T	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	silent	c.633	p.G211	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	492	0	0	142	377	72.5	-	-	-	T	29408425	C	T	29408425	2	4	180	1	0	0	0	0	0	0	0	1	10971	726	26	4		4	OR10C1	6	29408425	Silent	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09		29408425	141706642	7	11154										
SLC22A2	0	genome.wustl.edu	37	chr6	160671727	160671727	+	Frame_Shift_Del	DEL	G	G	-													0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	agttaggaggcagagcttacGgccaaacctgcaggaagaaa							TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	6	160671727	160671727	G	-	DEL	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	frame_shift_del	c.526	p.R176fs	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	157	0	0	64	132	65.67	-	-	-	-	160671727	G	-	160671727	7	5	180	1	0	1	0	1	0	0	0	0	14540	1116	39	0	1177	0	SLC22A2	6	160671727	Frame_Shift_Del	DEL	G	TCGA-A8-A07Z-01A-11W-A019-09	131263302	160671727	10443340	8	11155										
RSPH10B	0	genome.wustl.edu	37	chr7	5992828	5992828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	atgcgccttcgtacacacgcCcgttcttgaaagttaatcgg	9	12	1	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	7	5992828	5992828	C	T	SNP	RSPH10B	ENST00000337579	human	ensembl	69_37n	-1	known	missense	c.980	p.G327E	1.000	pfam_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH10B	HGNC	ENSG00000155026	10	0	0	1	6	85.71	-	-	-	T	5992828	C	T	5992828	3	4	180	1	0	0	0	0	1	0	0	0	13789	623	22	4	1680	4	RSPH10B	7	5992828	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09		5992828	153145835	9	11156										
MLL3	0	genome.wustl.edu	37	chr7	151849846	151849846	+	Frame_Shift_Del	DEL	A	A	-													0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	tcagccggtaagagctcactAatctgggagggtttgcagat							TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	7	151849846	151849846	A	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.12641	p.L4214fs	0.012	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	196	0	0	79	212	71.14	-	-	-	-	151849846	A	-	151849846	7	5	180	1	0	1	0	1	0	0	0	0	9693	372	13	0	2309	0	MLL3	7	151849846	Frame_Shift_Del	DEL	A	TCGA-A8-A07Z-01A-11W-A019-09	145857018	151849846	7288817	10	11157										
FREM1	0	genome.wustl.edu	37	chr9	14746441	14746441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ctgagtgctggtgccacccgGctggacaggatttgtcttcc	13	12	1	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	9	14746441	14746441	G	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.6167	p.A2056V	0.064	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	126	0	0	111	97	46.63	-	-	-	A	14746441	G	A	14746441	3	1	180	1	0	0	0	0	1	0	0	0	6093	1203	42	4	387	4	FREM1	9	14746441	Missense_Mutation	SNP	G	TCGA-A8-A07Z-01A-11W-A019-09		14746441	126466990	11	11158										
CIZ1	0	genome.wustl.edu	37	chr9	130931780	130931780	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	gcaaacggtgcagaagggtcGcaaggattgtttggcaatct	14	7	1	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	9	130931780	130931780	G	A	SNP	CIZ1	ENST00000538431	human	ensembl	69_37n	-1	known	nonsense	c.2128	p.R710*	0.994	smart_Znf_U1	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337	27	0	0	26	4	13.33	-	-	-	A	130931780	G	A	130931780	4	1	180	1	0	0	0	0	0	1	0	0	3471	1095	38	1	666	1	CIZ1	9	130931780	Nonsense_Mutation	SNP	G	TCGA-A8-A07Z-01A-11W-A019-09	116185339	130931780	10281651	12	11159										
HPS1	0	genome.wustl.edu	37	chr10	100185607	100185607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	caccaggttgatgccctgccAcaggggcaggcagtacatgg	14	12	0	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	10	100185607	100185607	A	G	SNP	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	missense	c.1123	p.W375R	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	26	0	0	16	12	42.86	-	-	-	G	100185607	A	G	100185607	3	3	180	1	0	0	0	0	1	0	0	0	7390	159	6	5	1015	5	HPS1	10	100185607	Missense_Mutation	SNP	A	TCGA-A8-A07Z-01A-11W-A019-09		100185607	35349140	13	11160										
DDX47	0	genome.wustl.edu	37	chr12	12974215	12974215	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	gctttgcccattctaaacgcActgctggagaccccgcagcg	10	15	1	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	12	12974215	12974215	A	G	SNP	DDX47	ENST00000358007	human	ensembl	69_37n	1	known	silent	c.255	p.A85	0.001	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX47	HGNC	ENSG00000213782	276	1	0.36	300	108	26.21	-	-	-	G	12974215	A	G	12974215	2	3	180	1	0	0	0	0	0	0	0	1	4396	146	6	5		5	DDX47	12	12974215	Silent	SNP	A	TCGA-A8-A07Z-01A-11W-A019-09		12974215	120877680	14	11161										
ACSS3	0	genome.wustl.edu	37	chr12	81503342	81503342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ttccaattatttttcaggttTgtggaaggaatgcttaacat	8	5	1	0			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	12	81503342	81503342	T	C	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	silent	c.315	p.F105	1.000	pfam_Acyl-CoA_synth_DUF3448	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	166	0	0	228	62	21.38	-	-	-	C	81503342	T	C	81503342	2	2	180	1	0	0	0	0	0	0	0	1	190	1809	63	5		5	ACSS3	12	81503342	Silent	SNP	T	TCGA-A8-A07Z-01A-11W-A019-09	68529127	81503342	52348553	15	11162										
EEA1	0	genome.wustl.edu	37	chr12	93195436	93195436	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	tccttaagtgtgttttccatCtgcacttgaagttgatgctt	8	8	1	2			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	12	93195436	93195436	C	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.2712	p.Q904	0.135	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	78	0	0	72	38	34.55	-	-	-	T	93195436	C	T	93195436	2	4	180	1	0	0	0	0	0	0	0	1	4956	912	32	2		2	EEA1	12	93195436	Silent	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09	11692094	93195436	40656459	16	11163										
ZFYVE26	0	genome.wustl.edu	37	chr14	68236344	68236344	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	aactatagcactgatcacacAcacgagcagggttctctctg	8	12	3	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	14	68236344	68236344	A	C	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.5588	p.V1863G	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	79	0	0	29	71	71	-	-	-	C	68236344	A	C	68236344	3	2	180	1	0	0	0	0	1	0	0	0	17764	159	6	5	2087	5	ZFYVE26	14	68236344	Missense_Mutation	SNP	A	TCGA-A8-A07Z-01A-11W-A019-09		68236344	39113196	17	11164										
ATG2B	0	genome.wustl.edu	37	chr14	96783628	96783628	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	agtggaaaaatactgcaaagTctcctcctcagatccacttt	6	11	2	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	14	96783628	96783628	T	A	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.3064	p.T1022S	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	133	0	0	141	61	30.2	-	-	-	A	96783628	T	A	96783628	3	1	180	1	0	0	0	0	1	0	0	0	1098	1667	58	5	3264	5	ATG2B	14	96783628	Missense_Mutation	SNP	T	TCGA-A8-A07Z-01A-11W-A019-09	28547284	96783628	10565912	18	11165										
APBA2	0	genome.wustl.edu	37	chr15	29397755	29397756	+	Frame_Shift_Del	DEL	CA	CA	-													0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ttctcaaactcggagaactgCaaggaggtaagccacaccca							TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	15	29397755	29397756	CA	-	DEL	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	frame_shift_del	c.1698_1699	p.C566fs	1.000:1.000	superfamily_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	14	0	0	8	3	25	-	-	-	-	29397756	CA	-	29397755	7	5	180	1	0	1	0	1	0	0	0	0	758	718	25	0	1728	0	APBA2	15	29397755	Frame_Shift_Del	DEL	CA	TCGA-A8-A07Z-01A-11W-A019-09		29397755	73133637	19	11166										
MAP2K4	0	genome.wustl.edu	37	chr17	11998993	11998993	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	ccatacattgttcagttttaTggtgcactcttcagagaggt	9	8	3	1			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	17	11998993	11998993	T	A	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	nonsense	c.528	p.Y176*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	305	0	0	133	108	44.81	-	-	-	A	11998993	T	A	11998993	4	1	180	1	0	0	0	0	0	1	0	0	9310	1471	51	5	509	5	MAP2K4	17	11998993	Nonsense_Mutation	SNP	T	TCGA-A8-A07Z-01A-11W-A019-09		11998993	69196217	20	11167										
FLII	0	genome.wustl.edu	37	chr17	18158120	18158120	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	cagcaccagcatgttcttggCgttctccagctcccgcgggc	11	16	2	0			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	17	18158120	18158120	C	G	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.376	p.A126P	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	23	0	0	9	4	30.77	-	-	-	G	18158120	C	G	18158120	3	3	180	1	0	0	0	0	1	0	0	0	5971	768	27	3	3537	3	FLII	17	18158120	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09	6159127	18158120	63037090	21	11168										
MEX3C	0	genome.wustl.edu	37	chr18	48703431	48703431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	aggattggaggagagccacgCagagccaagagtgccacctt	14	10	0	3			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	18	48703431	48703431	C	T	SNP	MEX3C	ENST00000406189	human	ensembl	69_37n	-1	known	missense	c.1270	p.A424T	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	148	0	0	50	172	76.44	-	-	-	T	48703431	C	T	48703431	3	4	180	1	0	0	0	0	1	0	0	0	9582	710	25	4	713	4	MEX3C	18	48703431	Missense_Mutation	SNP	C	TCGA-A8-A07Z-01A-11W-A019-09		48703431	29373817	22	11169										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29935618	29935618	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.968086459607629	0.785299806576402	0	0.863829787234043	1	1	0	acctgcagagctttctttggGtacagcggagatgtcagtcc	12	10	2	2			TCGA-A8-A07Z-01A-11W-A019-09	TCGA-A8-A07Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4af33f9-f5fe-4e52-8ca0-991bbce2270d	a9ac6ea6-e114-4fac-8372-86cb23c835ec	X	29935618	29935618	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	silent	c.816	p.G272	0.977	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	89	0	0	84	73	46.5	-	-	-	A	29935618	G	A	29935618	2	1	180	1	0	0	0	0	0	0	0	1	7715	1248	44	4		4	IL1RAPL1	23	29935618	Silent	SNP	G	TCGA-A8-A07Z-01A-11W-A019-09		29935618	125334942	23	11170										
PER3	0	genome.wustl.edu	37	chr1	7886604	7886604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cagccagcccctttgacctcGgaagaatttaaacacgtggg	10	12	0	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	7886604	7886604	G	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.1998	p.S666	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	83	0	0	77	30	28.04	-	-	-	A	7886604	G	A	7886604	2	1	181	1	0	0	0	0	0	0	0	1	11804	1103	39	1		1	PER3	1	7886604	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09		7886604	241364017	1	11171										
DLGAP3	0	genome.wustl.edu	37	chr1	35350653	35350653	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttctcggtgtccgaatctgaGatcgtctccacctggtggca	11	12	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	35350653	35350653	G	T	SNP	DLGAP3	ENST00000235180	human	ensembl	69_37n	-1	known	silent	c.1926	p.I642	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	19	0	0	9	10	52.63	-	-	-	T	35350653	G	T	35350653	2	4	181	1	0	0	0	0	0	0	0	1	4597	932	33	2		2	DLGAP3	1	35350653	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	27464049	35350653	213899968	2	11172										
INPP5B	0	genome.wustl.edu	37	chr1	38341331	38341331	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggcattttccatcttatccaGggagcgaacaatttcctcca	7	12	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	38341331	38341331	G	C	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.1975	p.L659V	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	25	0	0	42	9	17.31	-	-	-	C	38341331	G	C	38341331	3	2	181	1	0	0	0	0	1	0	0	0	7809	991	35	4	1038	4	INPP5B	1	38341331	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	2990678	38341331	210909290	3	11173										
OSBPL9	0	genome.wustl.edu	37	chr1	52227565	52227565	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttcagttgtgtaagtcagagCagcgtccatcttccctacca	8	12	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	52227565	52227565	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	1	known	nonsense	c.754	p.Q252*	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	166	0	0	175	60	25.42	-	-	-	T	52227565	C	T	52227565	4	4	181	1	0	0	0	0	0	1	0	0	11357	711	25	4	846	4	OSBPL9	1	52227565	Nonsense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	13886234	52227565	197023056	4	11174										
HSD3B2	0	genome.wustl.edu	37	chr1	119962135	119962135	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	caggacgtctcggtcgtcatCcacaccgcctgtatcattga	9	14	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	119962135	119962135	C	G	SNP	HSD3B2	ENST00000369416	human	ensembl	69_37n	1	known	missense	c.237	p.I79M	0.946	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	61	0	0	147	42	22.22	-	-	-	G	119962135	C	G	119962135	3	3	181	1	0	0	0	0	1	0	0	0	7442	845	30	2	243	2	HSD3B2	1	119962135	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	67734570	119962135	129288486	5	11175										
TNFSF18	0	genome.wustl.edu	37	chr1	173019924	173019924	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttagccaactgaaggagcaaAgaaatagcaacataactatt	7	7	0	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	173019924	173019924	A	C	SNP	TNFSF18	ENST00000404377	human	ensembl	69_37n	-1	known	missense	c.179	p.L60R	0.006	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like	-	no_errors	TNFSF18	HGNC	ENSG00000120337	71	0	0	111	33	22.92	-	-	-	C	173019924	A	C	173019924	3	2	181	1	0	0	0	0	1	0	0	0	16404	72	3	5	432	5	TNFSF18	1	173019924	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	53057789	173019924	76230697	6	11176										
PPFIA4	0	genome.wustl.edu	37	chr1	203024614	203024614	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cgcgcggaggagattgagacGcgtgtaaccagtggcagcat	16	9	0	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	203024614	203024614	G	A	SNP	PPFIA4	ENST00000367240	human	ensembl	69_37n	1	known	silent	c.1821	p.T607	0.002	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_Prefoldin,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847	51	0	0	56	19	25.33	-	-	-	A	203024614	G	A	203024614	2	1	181	1	0	0	0	0	0	0	0	1	12385	1074	38	1		1	PPFIA4	1	203024614	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	30004690	203024614	46226007	7	11177										
CAPN2	0	genome.wustl.edu	37	chr1	223940644	223940644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gggctccaccgcgggaggttGcaggaactacccgagtaagg	16	11	0	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	223940644	223940644	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.1121	p.C374Y	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	39	0	0	40	12	23.08	-	-	-	A	223940644	G	A	223940644	3	1	181	1	0	0	0	0	1	0	0	0	2652	1319	46	4	1162	4	CAPN2	1	223940644	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	20916030	223940644	25309977	8	11178										
CAPN2	0	genome.wustl.edu	37	chr1	223959610	223959610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttttgttcggtgtttggttcGgctggaaacgctattcagta	12	6	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	223959610	223959610	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.2003	p.R668Q	0.994	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	189	0	0	361	247	40.62	-	-	-	A	223959610	G	A	223959610	3	1	181	1	0	0	0	0	1	0	0	0	2652	1116	39	1	2084	1	CAPN2	1	223959610	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	18966	223959610	25291011	9	11179										
OR2L2	0	genome.wustl.edu	37	chr1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tttcctaatggctctaattgGaaatctatccatgattcttc	5	9	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	1	248201688	248201688	G	T	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	missense	c.119	p.G40V	0.797	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	565	0	0	1353	302	18.25	-	-	-	T	248201688	G	T	248201688	3	4	181	1	0	0	0	0	1	0	0	0	11080	1174	41	2	121	2	OR2L2	1	248201688	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	24242078	248201688	1048933	10	11180										
BIRC6	0	genome.wustl.edu	37	chr2	32836514	32836514	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tcctgtttactttttctcaaGgtaatacacaaacattttta	3	8	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	32836514	32836514	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	splice_site	c.14260-1	e73-1	1.000	-	-	-	no_errors	BIRC6	HGNC	ENSG00000115760	107	0	0	312	51	14.05	-	-	-	T	32836514	G	T	32836514	5	4	181	1	0	0	0	0	0	0	1	0	1443	1014	35	4	14549	4	BIRC6	2	32836514	Splice_Site	SNP	G	TCGA-A8-A081-01A-11W-A019-09		32836514	210362859	11	11181										
PRKD3	0	genome.wustl.edu	37	chr2	37543649	37543649	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	agacttctgggctgatggagGggaattatttgcagacatct	13	6	2	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	37543649	37543649	G	C	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	missense	c.19	p.P7A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	91	0	0	202	39	16.18	-	-	-	C	37543649	G	C	37543649	3	2	181	1	0	0	0	0	1	0	0	0	12601	1232	43	4	2725	4	PRKD3	2	37543649	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	4707135	37543649	205655724	12	11182										
SEMA4F	0	genome.wustl.edu	37	chr2	74900921	74900921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	agcatttgactcatacgagcGcattaaagtcccacgggtgg	11	10	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	74900921	74900921	G	A	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.788	p.R263H	0.001	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	105	0	0	180	36	16.67	-	-	-	A	74900921	G	A	74900921	3	1	181	1	0	0	0	0	1	0	0	0	14123	1087	38	1	814	1	SEMA4F	2	74900921	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	37357272	74900921	168298452	13	11183										
SAP130	0	genome.wustl.edu	37	chr2	128774072	128774074	+	In_Frame_Del	DEL	GGT	GGT	-													0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggggaagtgacagggtagaaGgtggagcaggagcaatggga							TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	128774072	128774074	GGT	-	DEL	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	in_frame_del	c.476_474	p.P159in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	41	0	0	75	12	13.79	-	-	-	-	128774074	GGT	-	128774072	7	5	181	1	0	1	0	1	0	0	0	0	13917	1000	35	0	2847	0	SAP130	2	128774072	In_Frame_Del	DEL	GGT	TCGA-A8-A081-01A-11W-A019-09	53873151	128774072	114425301	14	11184										
SCN7A	0	genome.wustl.edu	37	chr2	167304187	167304187	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tgtctgtggaaattggtgacCttttcttcatttctatttgt	8	6	4	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	167304187	167304187	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.1322	p.R441M	0.997	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	101	1	0.98	221	68	23.53	-	-	-	A	167304187	C	A	167304187	3	1	181	1	0	0	0	0	1	0	0	0	14011	681	24	4	3786	4	SCN7A	2	167304187	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	38530115	167304187	75895186	15	11185										
XIRP2	0	genome.wustl.edu	37	chr2	168107195	168107195	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tgttcgtagtcacgtgaaaaCccatcaggaaattaaacttg	8	8	2	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	168107195	168107195	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9293	p.T3098N	0.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	311	0	0	442	161	26.66	-	-	-	A	168107195	C	A	168107195	3	1	181	1	0	0	0	0	1	0	0	0	17527	507	18	4	9323	4	XIRP2	2	168107195	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	803008	168107195	75092178	16	11186										
XIRP2	0	genome.wustl.edu	37	chr2	168114995	168114995	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ataggccgagtgaagctgaaGacacaaagagtaacaggaaa	12	6	0	4			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	168114995	168114995	G	A	SNP	XIRP2	ENST00000420519	human	ensembl	69_37n	1	known	missense	c.2038	p.D680N	0.945	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092	149	0	0	231	64	21.69	-	-	-	A	168114995	G	A	168114995	3	1	181	1	0	0	0	0	1	0	0	0	17527	942	33	2	11356	2	XIRP2	2	168114995	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	7800	168114995	75084378	17	11187										
ITGA4	0	genome.wustl.edu	37	chr2	182386929	182386929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	aatttttaggccccatgaaaAtaaaacatatcttgctgttg	6	7	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	182386929	182386929	A	G	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.1934	p.N645S	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	164	0	0	251	67	21.07	-	-	-	G	182386929	A	G	182386929	3	3	181	1	0	0	0	0	1	0	0	0	7932	101	4	5	2004	5	ITGA4	2	182386929	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	14271934	182386929	60812444	18	11188										
ITGAV	0	genome.wustl.edu	37	chr2	187521035	187521035	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggagcaattcgacgagcactGtttctctacagcaggtcccc	10	13	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	187521035	187521035	G	T	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	silent	c.1626	p.L542	0.241	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	175	0	0	306	77	20.1	-	-	-	T	187521035	G	T	187521035	2	4	181	1	0	0	0	0	0	0	0	1	7942	1364	48	4		4	ITGAV	2	187521035	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	5134106	187521035	55678338	19	11189										
ITGAV	0	genome.wustl.edu	37	chr2	187540353	187540353	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttgtggagttgctcagtgctTgaagattgtctgccaagttg	13	6	2	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	187540353	187540353	T	G	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	missense	c.2729	p.L910W	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	56	0	0	87	68	43.87	-	-	-	G	187540353	T	G	187540353	3	3	181	1	0	0	0	0	1	0	0	0	7942	1821	63	5	2886	5	ITGAV	2	187540353	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	19318	187540353	55659020	20	11190										
SPEG	0	genome.wustl.edu	37	chr2	220348875	220348876	+	Frame_Shift_Ins	INS	-	-	C													0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gagcctccaagcctgcaccaINScccccccaggccctgcaaac							TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	220348875	220348876	-	C	INS	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	frame_shift_ins	c.6690_6691	p.Q2232fs	0.009:0.034	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	13	0	0	3	2	40	-	-	-	C	220348876	-	C	220348875	7	5	181	1	0	1	1	0	0	0	0	0	15127	146	6	0	6820	0	SPEG	2	220348875	Frame_Shift_Ins	INS	-	TCGA-A8-A081-01A-11W-A019-09	32808522	220348875	22850498	21	11191										
SPHKAP	0	genome.wustl.edu	37	chr2	228882135	228882135	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gcatagtaatccagcagtaaCtcaaatcctctcccttcatt	4	13	3	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	2	228882135	228882135	C	G	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.3435	p.E1145D	0.986	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	73	0	0	67	17	20.24	-	-	-	G	228882135	C	G	228882135	3	3	181	1	0	0	0	0	1	0	0	0	15139	564	20	4	1691	4	SPHKAP	2	228882135	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	8533260	228882135	14317238	22	11192										
CAMKV	0	genome.wustl.edu	37	chr3	49899764	49899764	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	caaatcatatctgtcagtcaCctccgatggctggttatagt	8	10	4	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	3	49899764	49899764	C	G	SNP	CAMKV	ENST00000467248	human	ensembl	69_37n	-1	putative	splice_site	c.1+1	e0+1	1.000	-	-	-	no_errors	CAMKV	HGNC	ENSG00000164076	22	0	0	26	14	35	-	-	-	G	49899764	C	G	49899764	5	3	181	1	0	0	0	0	0	0	1	0	2633	507	18	4	1487	4	CAMKV	3	49899764	Splice_Site	SNP	C	TCGA-A8-A081-01A-11W-A019-09		49899764	148122666	23	11193										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	126	0	0	278	287	50.8	-	-	-	G	178952085	A	G	178952085	3	3	181	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	129052321	178952085	19070345	24	11194										
PRDM8	0	genome.wustl.edu	37	chr4	81123205	81123205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	aagacgaacaaggcggcggcGtgggcaccaaggaccacggg	17	11	0	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	4	81123205	81123205	G	A	SNP	PRDM8	ENST00000339711	human	ensembl	69_37n	1	known	missense	c.589	p.V197M	0.069	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784	45	0	0	18	9	33.33	-	-	-	A	81123205	G	A	81123205	3	1	181	1	0	0	0	0	1	0	0	0	12543	1145	40	1	599	1	PRDM8	4	81123205	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		81123205	110031071	25	11195										
PRKG2	0	genome.wustl.edu	37	chr4	82092908	82092908	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ctccccaaatgtggtccacaTagggatggaggacagcaatt	11	10	0	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	4	82092908	82092908	T	C	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	missense	c.679	p.M227V	0.970	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	114	0	0	133	52	27.96	-	-	-	C	82092908	T	C	82092908	3	2	181	1	0	0	0	0	1	0	0	0	12604	1406	49	5	1673	5	PRKG2	4	82092908	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	969703	82092908	109061368	26	11196										
SORBS2	0	genome.wustl.edu	37	chr4	186544917	186544917	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttcttcctccagcaaatactCaatggaaaaccgcctcttgg	6	13	3	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	4	186544917	186544917	C	G	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.1654	p.E552Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	41	0	0	30	6	16.67	-	-	-	G	186544917	C	G	186544917	3	3	181	1	0	0	0	0	1	0	0	0	15017	835	29	2	1684	2	SORBS2	4	186544917	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	104452009	186544917	4609359	27	11197										
PCDHB4	0	genome.wustl.edu	37	chr5	140502504	140502504	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ttgaaaaaaaaattggatttCgaaaaaattaaatcttacca	4	4	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	5	140502504	140502504	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	69_37n	1	known	silent	c.924	p.F308	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	184	0	0	149	64	30.05	-	-	-	T	140502504	C	T	140502504	2	4	181	1	0	0	0	0	0	0	0	1	11617	883	31	1		1	PCDHB4	5	140502504	Silent	SNP	C	TCGA-A8-A081-01A-11W-A019-09		140502504	40412756	28	11198										
PHACTR1	0	genome.wustl.edu	37	chr6	13053669	13053669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cacccacaccccacccatccGcaggagaagtaagtttgcca	7	17	0	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	13053669	13053669	G	A	SNP	PHACTR1	ENST00000432934	human	ensembl	69_37n	1	known	missense	c.323	p.R108H	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	23	0	0	21	17	44.74	-	-	-	A	13053669	G	A	13053669	3	1	181	1	0	0	0	0	1	0	0	0	11883	1087	38	1	333	1	PHACTR1	6	13053669	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		13053669	158061398	29	11199										
BAI3	0	genome.wustl.edu	37	chr6	69758178	69758178	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	actgggcaagaaactcagaaGatagggtagtaattccaaaa	10	6	1	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	69758178	69758178	G	T	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.2209	p.D737Y	1.000	pfam_DUF3497,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	110	0	0	140	42	23.08	-	-	-	T	69758178	G	T	69758178	3	4	181	1	0	0	0	0	1	0	0	0	1304	942	33	2	2255	2	BAI3	6	69758178	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	56704509	69758178	101356889	30	11200										
MDN1	0	genome.wustl.edu	37	chr6	90353899	90353899	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	taaatatcggtactttaatgTccaagatagaatcctgtcaa	6	7	1	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	90353899	90353899	T	C	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.16616	p.D5539G	1.000	smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	134	0	0	136	38	21.71	-	-	-	C	90353899	T	C	90353899	3	2	181	1	0	0	0	0	1	0	0	0	9486	1667	58	5	178	5	MDN1	6	90353899	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	20595721	90353899	80761168	31	11201										
GPR6	0	genome.wustl.edu	37	chr6	110301379	110301379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ccagtccaaagtgccctttcGttccaggtctcccagcgagg	10	15	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	110301379	110301379	G	A	SNP	GPR6	ENST00000414000	human	ensembl	69_37n	1	known	missense	c.1109	p.R370H	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR6_rcpt,prints_GPR_orph_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360	62	0	0	37	21	36.21	-	-	-	A	110301379	G	A	110301379	3	1	181	1	0	0	0	0	1	0	0	0	6751	1145	40	1	1066	1	GPR6	6	110301379	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	19947480	110301379	60813688	32	11202										
SGK1	0	genome.wustl.edu	37	chr6	134495199	134495199	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ctgaggttgggagatcttcaAgatggactgaacttcagggc	14	7	3	4			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	134495199	134495199	A	C	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	missense	c.457	p.L153V	1.000	superfamily_Phox	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	78	0	0	98	30	23.44	-	-	-	C	134495199	A	C	134495199	3	2	181	1	0	0	0	0	1	0	0	0	14295	69	3	5	1163	5	SGK1	6	134495199	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	24193820	134495199	36619868	33	11203										
LPA	0	genome.wustl.edu	37	chr6	161026093	161026093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	catacgcatttgggtagtatGctggggtccgactatgcgag	14	8	0	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	6	161026093	161026093	G	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.2930	p.A977E	0.158	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	506	0	0	731	300	29.04	-	-	-	T	161026093	G	T	161026093	3	4	181	1	0	0	0	0	1	0	0	0	8969	1319	46	4	3280	4	LPA	6	161026093	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	26530894	161026093	10088974	34	11204										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74237282	74237282	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	taccacagccgactggtctcGcagcatcttctcatagggaa	9	13	3	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	7	74237282	74237282	G	A	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	nonsense	c.412	p.R138*	0.232	pfam_GTF2I,superfamily_GTF2I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	29	0	0	58	17	22.67	-	-	-	A	74237282	G	A	74237282	4	1	181	1	0	0	0	0	0	1	0	0	6920	1095	38	1	2485	1	GTF2IRD2	7	74237282	Nonsense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		74237282	84901381	35	11205										
TMEM209	0	genome.wustl.edu	37	chr7	129832501	129832501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tttctcctcttcacttctgaGaaaagtatccaaagttcgta	5	10	4	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	7	129832501	129832501	G	A	SNP	TMEM209	ENST00000397622	human	ensembl	69_37n	-1	known	missense	c.736	p.L246F	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842	48	0	0	118	38	24.36	-	-	-	A	129832501	G	A	129832501	3	1	181	1	0	0	0	0	1	0	0	0	16229	942	33	2	989	2	TMEM209	7	129832501	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	55595219	129832501	29306162	36	11206										
ESRP1	0	genome.wustl.edu	37	chr8	95690588	95690588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ctcttcatgaattacacagcGtactatcccaggtaaggctc	7	12	2	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	8	95690588	95690588	G	T	SNP	ESRP1	ENST00000519505	human	ensembl	69_37n	1	putative	missense	c.1405	p.V469L	0.002	NULL	smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ESRP1	HGNC	ENSG00000104413	65	0	0	173	33	16.02	-	-	-	T	95690588	G	T	95690588	3	4	181	1	0	0	0	0	1	0	0	0	5295	1132	40	3	1859	3	ESRP1	8	95690588	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		95690588	50673434	37	11207										
CSMD3	0	genome.wustl.edu	37	chr8	113358357	113358357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggtagatttattgtccatgtGcaatctaaactgctgggata	10	6	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	8	113358357	113358357	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.6411	p.C2137	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	102	0	0	226	44	16.3	-	-	-	A	113358357	G	A	113358357	2	1	181	1	0	0	0	0	0	0	0	1	3978	1311	46	4		4	CSMD3	8	113358357	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	17667769	113358357	33005665	38	11208										
GLDC	0	genome.wustl.edu	37	chr9	6588676	6588676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tttccagtttcttcatgtacCggacaatgtttgtttcagag	8	8	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	9	6588676	6588676	C	T	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.1607	p.R536Q	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	72	0	0	44	21	32.31	-	-	-	T	6588676	C	T	6588676	3	4	181	1	0	0	0	0	1	0	0	0	6485	652	23	1	1507	1	GLDC	9	6588676	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09		6588676	134624755	39	11209										
ZNF510	0	genome.wustl.edu	37	chr9	99521789	99521789	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ctgaggtgtgacttctgggaGaaagtttttccacattcact	10	8	2	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	9	99521789	99521789	G	A	SNP	ZNF510	ENST00000223428	human	ensembl	69_37n	-1	known	silent	c.1323	p.F441	0.967	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386	219	0	0	509	128	20.09	-	-	-	A	99521789	G	A	99521789	2	1	181	1	0	0	0	0	0	0	0	1	18050	933	33	2		2	ZNF510	9	99521789	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	92933113	99521789	41691642	40	11210										
NR4A3	0	genome.wustl.edu	37	chr9	102595691	102595691	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tgcatgatgaatgcccttgtCcgagctttaacagactcaac	8	11	1	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	9	102595691	102595691	C	T	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	silent	c.1242	p.V414	0.996	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	94	0	0	125	30	19.35	-	-	-	T	102595691	C	T	102595691	2	4	181	1	0	0	0	0	0	0	0	1	10707	842	30	2		2	NR4A3	9	102595691	Silent	SNP	C	TCGA-A8-A081-01A-11W-A019-09	3073902	102595691	38617740	41	11211										
TNC	0	genome.wustl.edu	37	chr9	117838356	117838356	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	attgctctccttgtcttcctTcacagcagaaactccaatcc	4	15	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	9	117838356	117838356	T	G	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.2905	p.K969Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	144	0	0	222	59	21	-	-	-	G	117838356	T	G	117838356	3	3	181	1	0	0	0	0	1	0	0	0	16365	1792	62	5	3780	5	TNC	9	117838356	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	15242665	117838356	23375075	42	11212										
CACNA1B	0	genome.wustl.edu	37	chr9	140846819	140846819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tgctcaacctggtgctgggcGtgctctcggggtgagagacc	16	11	2	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	9	140846819	140846819	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.1060	p.V354M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	34	0	0	40	10	20	-	-	-	A	140846819	G	A	140846819	3	1	181	1	0	0	0	0	1	0	0	0	2564	1145	40	1	1086	1	CACNA1B	9	140846819	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	23008463	140846819	366612	43	11213										
CYB5R2	0	genome.wustl.edu	37	chr11	7687778	7687778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tctgaccaagatatcctcctCtgtctagaaaagaagcaaca	6	11	3	4			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	11	7687778	7687778	C	T	SNP	CYB5R2	ENST00000299498	human	ensembl	69_37n	-1	known	missense	c.562	p.E188K	1.000	pfam_OxRdtase_FAD/NAD-bd	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394	25	0	0	26	7	21.21	-	-	-	T	7687778	C	T	7687778	3	4	181	1	0	0	0	0	1	0	0	0	4158	922	32	2	276	2	CYB5R2	11	7687778	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09		7687778	127318738	44	11214										
OR5D16	0	genome.wustl.edu	37	chr11	55607005	55607005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tccatggcaccatcctcttcCtctactgtgtacccaactcc	4	18	2	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	11	55607005	55607005	C	G	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.778	p.L260V	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	222	0	0	337	88	20.66	-	-	-	G	55607005	C	G	55607005	3	3	181	1	0	0	0	0	1	0	0	0	11229	681	24	4	780	4	OR5D16	11	55607005	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	47919227	55607005	79399511	45	11215										
PYGM	0	genome.wustl.edu	37	chr11	64514134	64514134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gggtctggtctggaggctcaGatggcctcatccggggctgg	18	10	4	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	11	64514134	64514134	G	C	SNP	PYGM	ENST00000164139	human	ensembl	69_37n	-1	known	missense	c.2526	p.I842M	0.963	NULL	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	34	0	0	23	23	50	-	-	-	C	64514134	G	C	64514134	3	2	181	1	0	0	0	0	1	0	0	0	12945	932	33	2	6	2	PYGM	11	64514134	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	8907129	64514134	70492382	46	11216										
CCDC87	0	genome.wustl.edu	37	chr11	66358013	66358013	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ccgagaccaggtggcgaaccCgccgctgctgttgcagccaa	13	15	0	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	11	66358013	66358013	C	T	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.2474	p.R825Q	0.614	pfam_Microtubule-assoc_MAP65_ASE1	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	36	0	0	65	14	17.72	-	-	-	T	66358013	C	T	66358013	3	4	181	1	0	0	0	0	1	0	0	0	2889	652	23	1	79	1	CCDC87	11	66358013	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	1843879	66358013	68648503	47	11217										
APOBEC1	0	genome.wustl.edu	37	chr12	7805264	7805264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggtgaaaatctctttctgacGtaaatttttttataaaatta	5	4	2	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	12	7805264	7805264	G	A	SNP	APOBEC1	ENST00000229304	human	ensembl	69_37n	-1	known	missense	c.212	p.T71M	0.000	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC1	HGNC	ENSG00000111701	36	0	0	110	27	19.71	-	-	-	A	7805264	G	A	7805264	3	1	181	1	0	0	0	0	1	0	0	0	789	1145	40	1	510	1	APOBEC1	12	7805264	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		7805264	126046631	48	11218										
UTP20	0	genome.wustl.edu	37	chr12	101750765	101750765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	aagaaatcagagacattgcaCgcagcactcttgcgaaaata	8	9	2	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	12	101750765	101750765	C	T	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.5596	p.R1866C	0.999	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	102	0	0	146	103	41.37	-	-	-	T	101750765	C	T	101750765	3	4	181	1	0	0	0	0	1	0	0	0	17196	536	19	1	5766	1	UTP20	12	101750765	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	93945501	101750765	32101130	49	11219										
TP53	0	genome.wustl.edu	37	chr17	7578508	7578508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	caacccacagctgcacagggCaggtcttggccagttggcaa	12	13	1	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	17	7578508	7578508	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.422	p.C141Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	49	0	0	23	50	68.49	-	-	-	T	7578508	C	T	7578508	3	4	181	1	0	0	0	0	1	0	0	0	16477	710	25	4	876	4	TP53	17	7578508	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09		7578508	73616702	50	11220										
MYH1	0	genome.wustl.edu	37	chr17	10419370	10419370	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggcaaccacttgtaggggttGacagtgacacagaacaagcc	12	10	0	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	17	10419370	10419370	G	C	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.378	p.V126	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	216	0	0	217	105	32.51	-	-	-	C	10419370	G	C	10419370	2	2	181	1	0	0	0	0	0	0	0	1	10101	1277	45	2		2	MYH1	17	10419370	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	2840862	10419370	70775840	51	11221										
KRT19	0	genome.wustl.edu	37	chr17	39681142	39681143	+	Frame_Shift_Ins	INS	-	-	G													0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	agctcttccttcaggccttcINSgatctgcatctccaggtcgg							TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	17	39681142	39681143	-	G	INS	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.613_612	p.E204fs	0.995:0.004	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	67	0	0	53	12	18.46	-	-	-	G	39681143	-	G	39681142	7	5	181	1	0	1	1	0	0	0	0	0	8509	893	31	0	605	0	KRT19	17	39681142	Frame_Shift_Ins	INS	-	TCGA-A8-A081-01A-11W-A019-09	29261772	39681142	41514068	52	11222										
ERN1	0	genome.wustl.edu	37	chr17	62137922	62137922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ctctccagcatcttggtagaCgcagacagtggggtttcatg	12	10	3	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	17	62137922	62137922	C	T	SNP	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	silent	c.1113	p.A371	0.373	NULL	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	80	0	0	82	38	31.67	-	-	-	T	62137922	C	T	62137922	2	4	181	1	0	0	0	0	0	0	0	1	5274	523	19	1		1	ERN1	17	62137922	Silent	SNP	C	TCGA-A8-A081-01A-11W-A019-09	22456780	62137922	19057288	53	11223										
LRRC37A3	0	genome.wustl.edu	37	chr17	62856170	62856170	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	aaggattttcttgaggactcAggtctcttaaggatgaaaaa	10	5	3	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	17	62856170	62856170	A	G	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.4094	p.L1365P	0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	181	0	0	371	66	15.1	-	-	-	G	62856170	A	G	62856170	3	3	181	1	0	0	0	0	1	0	0	0	9059	188	7	5	826	5	LRRC37A3	17	62856170	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	718248	62856170	18339040	54	11224										
DSG3	0	genome.wustl.edu	37	chr18	29055687	29055687	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tctatgataatgaaggcgcaGatgccactggttctcctgtg	11	9	2	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	18	29055687	29055687	G	A	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	missense	c.2464	p.D822N	0.025	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	101	0	0	66	102	60.71	-	-	-	A	29055687	G	A	29055687	3	1	181	1	0	0	0	0	1	0	0	0	4813	942	33	2	2526	2	DSG3	18	29055687	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09		29055687	49021561	55	11225										
CD226	0	genome.wustl.edu	37	chr18	67614147	67614147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	atagggcttccttatgaccaTgccatgagtagggctgaaaa	11	8	0	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	18	67614147	67614147	T	C	SNP	CD226	ENST00000280200	human	ensembl	69_37n	-1	known	missense	c.205	p.M69V	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD226	HGNC	ENSG00000150637	159	0	0	212	75	26.13	-	-	-	C	67614147	T	C	67614147	3	2	181	1	0	0	0	0	1	0	0	0	3015	1464	51	5	825	5	CD226	18	67614147	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	38558460	67614147	10463101	56	11226										
PTPRS	0	genome.wustl.edu	37	chr19	5265033	5265033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	actcacctgatcgcagctgtTtgatgcgtccattgctggca	10	12	1	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	5265033	5265033	T	C	SNP	PTPRS	ENST00000372412	human	ensembl	69_37n	-1	known	missense	c.554	p.K185R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like	-	no_errors	PTPRS	HGNC	ENSG00000105426	23	0	0	21	19	47.5	-	-	-	C	5265033	T	C	5265033	3	2	181	1	0	0	0	0	1	0	0	0	12894	1841	64	5	5428	5	PTPRS	19	5265033	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09		5265033	53863950	57	11227										
SLC35E1	0	genome.wustl.edu	37	chr19	16678954	16678954	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gtggccagcaggacaccgctGatgatggggatgagtgacaa	16	8	0	4			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	16678954	16678954	G	T	SNP	SLC35E1	ENST00000409648	human	ensembl	69_37n	-1	known	silent	c.519	p.I173	1.000	pfam_DMT,pfam_UAA	pfam_DUF250,pfam_DMT,pfam_UAA	-	no_errors	SLC35E1	HGNC	ENSG00000127526	44	0	0	32	13	28.89	-	-	-	T	16678954	G	T	16678954	2	4	181	1	0	0	0	0	0	0	0	1	14673	1280	45	2		2	SLC35E1	19	16678954	Silent	SNP	G	TCGA-A8-A081-01A-11W-A019-09	11413921	16678954	42450029	58	11228										
ZNF536	0	genome.wustl.edu	37	chr19	31039300	31039300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gcaagctttcatggacagttTtgtcctcagttccttgaaga	9	9	2	2			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	31039300	31039300	T	G	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.2774	p.F925C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	174	0	0	190	64	25.2	-	-	-	G	31039300	T	G	31039300	3	3	181	1	0	0	0	0	1	0	0	0	18070	1841	64	5	2784	5	ZNF536	19	31039300	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	14360346	31039300	28089683	59	11229										
ZNF235	0	genome.wustl.edu	37	chr19	44792449	44792449	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tacgactgaagcccttcccaCaactgtcacatctatagggc	7	14	2	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	44792449	44792449	C	A	SNP	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	missense	c.1139	p.C380F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	175	0	0	207	72	25.71	-	-	-	A	44792449	C	A	44792449	3	1	181	1	0	0	0	0	1	0	0	0	17884	478	17	4	1081	4	ZNF235	19	44792449	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	13753149	44792449	14336534	60	11230										
ZNF600	0	genome.wustl.edu	37	chr19	53270087	53270087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tttccgactgaaaactttgtCacattcttcacatttgtaag	5	9	3	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	53270087	53270087	C	G	SNP	ZNF600	ENST00000338230	human	ensembl	69_37n	-1	known	missense	c.922	p.D308H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190	522	0	0	661	163	19.76	-	-	-	G	53270087	C	G	53270087	3	3	181	1	0	0	0	0	1	0	0	0	18126	826	29	2	1250	2	ZNF600	19	53270087	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	8477638	53270087	5858896	61	11231										
ZNF549	0	genome.wustl.edu	37	chr19	58048854	58048854	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cagtggagagaaacacatcaGaaaggaggagagcagtgcct	14	7	1	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	19	58048854	58048854	G	C	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.482	p.R161T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	173	0	0	255	50	16.39	-	-	-	C	58048854	G	C	58048854	3	2	181	1	0	0	0	0	1	0	0	0	18077	942	33	2	453	2	ZNF549	19	58048854	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	4778767	58048854	1080129	62	11232										
CDC25B	0	genome.wustl.edu	37	chr20	3785499	3785499	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	accccaggactaccggcccaTgaaccacgaggccttcaagg	10	16	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	20	3785499	3785499	T	C	SNP	CDC25B	ENST00000245960	human	ensembl	69_37n	1	known	missense	c.1634	p.M545T	1.000	superfamily_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224	28	0	0	32	11	25.58	-	-	-	C	3785499	T	C	3785499	3	2	181	1	0	0	0	0	1	0	0	0	3092	1464	51	5	1696	5	CDC25B	20	3785499	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09		3785499	59240021	63	11233										
ZNF217	0	genome.wustl.edu	37	chr20	52192376	52192376	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	catttggagaatcgacctcgCtggagctcaggaaccttggt	12	10	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	20	52192376	52192376	C	G	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.2927	p.S976T	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	28	0	0	83	20	19.42	-	-	-	G	52192376	C	G	52192376	3	3	181	1	0	0	0	0	1	0	0	0	17868	797	28	4	227	4	ZNF217	20	52192376	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	48406877	52192376	10833144	64	11234										
PRICKLE3	0	genome.wustl.edu	37	chrX	49032244	49032244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	ggcgagctggagcaagattcCgagtctgaccctgatcccgc	13	13	1	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	49032244	49032244	C	T	SNP	PRICKLE3	ENST00000453382	human	ensembl	69_37n	-1	known	missense	c.1663	p.G555R	0.009	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRICKLE3	HGNC	ENSG00000012211	85	0	0	103	20	16.26	-	-	-	T	49032244	C	T	49032244	3	4	181	1	0	0	0	0	1	0	0	0	12569	639	23	1	225	1	PRICKLE3	23	49032244	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09		49032244	106238316	65	11235										
ZC3H12B	0	genome.wustl.edu	37	chrX	64708837	64708837	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cctgaacagataagccttaaGagtagcgacaacagcaagag	10	9	0	4			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	64708837	64708837	G	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.156	p.K52N	0.018	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	76	0	0	158	49	23.67	-	-	-	T	64708837	G	T	64708837	3	4	181	1	0	0	0	0	1	0	0	0	17658	933	33	2	158	2	ZC3H12B	23	64708837	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	15676593	64708837	90561723	66	11236										
ERCC6L	0	genome.wustl.edu	37	chrX	71426034	71426034	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	acataattaaaactttccagAggatcctcttgcagtgcctc	6	11	1	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	71426034	71426034	A	T	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	silent	c.2583	p.P861	0.001	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	246	0	0	536	107	16.64	-	-	-	T	71426034	A	T	71426034	2	4	181	1	0	0	0	0	0	0	0	1	5255	291	11	5		5	ERCC6L	23	71426034	Silent	SNP	A	TCGA-A8-A081-01A-11W-A019-09	6717197	71426034	83844526	67	11237										
NXF5	0	genome.wustl.edu	37	chrX	101096037	101096037	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gggtggcagccatgcagtttCttcgattcaggattatatca	11	8	3	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	101096037	101096037	C	T	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.431	p.R144K	1.000	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	412	0	0	1106	238	17.67	-	-	-	T	101096037	C	T	101096037	3	4	181	1	0	0	0	0	1	0	0	0	10859	913	32	2	702	2	NXF5	23	101096037	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	29670003	101096037	54174523	68	11238										
NXF5	0	genome.wustl.edu	37	chrX	101096477	101096477	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	atctccatttggcctggcttCaacttattcttcacagagta	6	11	4	1			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	101096477	101096477	C	G	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.294	p.L98F	0.948	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	440	0	0	909	223	19.7	-	-	-	G	101096477	C	G	101096477	3	3	181	1	0	0	0	0	1	0	0	0	10859	825	29	2	847	2	NXF5	23	101096477	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	440	101096477	54174083	69	11239										
GPRASP2	0	genome.wustl.edu	37	chrX	101970846	101970846	+	Missense_Mutation	SNP	T	T	A													0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	agaagaggccaatagtagatTcaggcacagagacaaagaag							TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	101970846	101970846	T	A	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1049	p.F350Y	0.181	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	197	0	0	165	83	33.47	-	-	-	A	101970846	T	A	101970846	3	1	181	1	0	0	0	0	1	0	0	0	6774	1783	62	5	1051	5	GPRASP2	23	101970846	Missense_Mutation	SNP	T	TCGA-A8-A081-01A-11W-A019-09	874369	101970846	53299714	70	11240	135	2								
GPRASP2	0	genome.wustl.edu	37	chrX	101970847	101970847	+	Missense_Mutation	SNP	C	C	A													0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	gaagaggccaatagtagattCaggcacagagacaaagaaga							TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	101970847	101970847	C	A	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1050	p.F350L	0.038	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	194	0	0	167	83	33.2	-	-	-	A	101970847	C	A	101970847	3	1	181	1	0	0	0	0	1	0	0	0	6774	825	29	2	1052	2	GPRASP2	23	101970847	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	1	101970847	53299713	71	11241	135	2								
UTP14A	0	genome.wustl.edu	37	chrX	129058966	129058966	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	acagacgctggaagagctagAagagctgggaaaagaagaat	14	5	0	6			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	129058966	129058966	A	C	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	missense	c.1544	p.E515A	0.157	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	242	0	0	305	60	16.44	-	-	-	C	129058966	A	C	129058966	3	2	181	1	0	0	0	0	1	0	0	0	17192	246	9	5	1590	5	UTP14A	23	129058966	Missense_Mutation	SNP	A	TCGA-A8-A081-01A-11W-A019-09	27088119	129058966	26211594	72	11242										
ATP11C	0	genome.wustl.edu	37	chrX	138869362	138869362	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	cttttctttggttctctactCtcatatatccatttcgattt	3	10	3	0			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	138869362	138869362	C	G	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.1571	p.R524T	0.087	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	172	0	0	287	41	12.5	-	-	-	G	138869362	C	G	138869362	3	3	181	1	0	0	0	0	1	0	0	0	1125	913	32	2	1954	2	ATP11C	23	138869362	Missense_Mutation	SNP	C	TCGA-A8-A081-01A-11W-A019-09	9810396	138869362	16401198	73	11243										
GABRQ	0	genome.wustl.edu	37	chrX	151815455	151815455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.178082191780822	13	0.0675985505268363	1.88246753246753	3.04090909090909	1.30324675324675	1	1	0	tcagacttggaaagattcacGcttagcatactatgagacca	8	9	2	3			TCGA-A8-A081-01A-11W-A019-09	TCGA-A8-A081-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80	a28d918c-2d16-49c9-a5f8-0cf66224f940	X	151815455	151815455	G	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	missense	c.353	p.R118H	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,prints_GABAAb_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	119	0	0	284	52	15.48	-	-	-	A	151815455	G	A	151815455	3	1	181	1	0	0	0	0	1	0	0	0	6224	1087	38	1	367	1	GABRQ	23	151815455	Missense_Mutation	SNP	G	TCGA-A8-A081-01A-11W-A019-09	12946093	151815455	3455105	74	11244										
COL7A1	0	genome.wustl.edu	37	chr3	48612870	48612871	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ccggcaaggccggaaggcccINSgggggggcccctctccccaa							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	3	48612870	48612871	-	G	INS	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6082_6081	p.G2027fs	1.000:0.981	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	16	0	0	15	2	11.76	-	-	-	G	48612871	-	G	48612870	7	5	182	1	0	1	1	0	0	0	0	0	3734	652	23	0	2936	0	COL7A1	3	48612870	Frame_Shift_Ins	INS	-	TCGA-A8-A082-01A-11W-A019-09		48612870	149409560	1	11245										
NAA11	0	genome.wustl.edu	37	chr4	80246828	80246828	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	agtgaggtgatatggccatgCgggacatcatctggttcctc	13	9	2	2			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	4	80246828	80246828	C	T	SNP	NAA11	ENST00000286794	human	ensembl	69_37n	-1	known	silent	c.204	p.P68	0.615	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269	128	0	0	73	47	39.17	-	-	-	T	80246828	C	T	80246828	2	4	182	1	0	0	0	0	0	0	0	1	10189	755	27	1		1	NAA11	4	80246828	Silent	SNP	C	TCGA-A8-A082-01A-11W-A019-09		80246828	110907448	2	11246										
MAP3K1	0	genome.wustl.edu	37	chr5	56183311	56183311	+	Frame_Shift_Del	DEL	A	A	-													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ggtgcaggagagtttcagggAcaattactggggacaattgc							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	5	56183311	56183311	A	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.4221	p.Q1408fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	335	0	0	228	112	32.28	-	-	-	-	56183311	A	-	56183311	7	5	182	1	0	1	0	1	0	0	0	0	9314	262	10	0	4291	0	MAP3K1	5	56183311	Frame_Shift_Del	DEL	A	TCGA-A8-A082-01A-11W-A019-09		56183311	124731949	3	11247										
TBX18	0	genome.wustl.edu	37	chr6	85446535	85446535	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	gggggcaacatctgccgatcCgtcatggtcccactcggtga	13	13	2	1			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	6	85446535	85446535	C	T	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	silent	c.1692	p.T564	0.007	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	115	0	0	61	39	39	-	-	-	T	85446535	C	T	85446535	2	4	182	1	0	0	0	0	0	0	0	1	15748	639	23	1		1	TBX18	6	85446535	Silent	SNP	C	TCGA-A8-A082-01A-11W-A019-09		85446535	85668532	4	11248										
ENPP3	0	genome.wustl.edu	37	chr6	132054845	132054845	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	cagacaagaatatcacccacGgcttcctctatcctcctggt	6	15	2	2			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	6	132054845	132054845	G	C	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	missense	c.2071	p.G691R	1.000	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	125	0	0	100	59	37.11	-	-	-	C	132054845	G	C	132054845	3	2	182	1	0	0	0	0	1	0	0	0	5168	1116	39	3	2153	3	ENPP3	6	132054845	Missense_Mutation	SNP	G	TCGA-A8-A082-01A-11W-A019-09	46608310	132054845	39060222	5	11249										
CPA4	0	genome.wustl.edu	37	chr7	129939179	129939179	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	tggtcccatctgtcagtctgCaggcatttaaatccttcctg	8	12	3	0			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	7	129939179	129939179	C	T	SNP	CPA4	ENST00000222482	human	ensembl	69_37n	1	known	nonsense	c.220	p.Q74*	0.572	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA4	HGNC	ENSG00000128510	147	0	0	86	51	36.96	-	-	-	T	129939179	C	T	129939179	4	4	182	1	0	0	0	0	0	1	0	0	3822	711	25	4	230	4	CPA4	7	129939179	Nonsense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09		129939179	29199484	6	11250										
SLC13A4	0	genome.wustl.edu	37	chr7	135376383	135376383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	agagactgtggcatcagtacGgtagcctttcctagtaaaga	11	8	1	2			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	7	135376383	135376383	G	A	SNP	SLC13A4	ENST00000354042	human	ensembl	69_37n	-1	known	missense	c.1231	p.R411C	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	67	0	0	52	28	35	-	-	-	A	135376383	G	A	135376383	3	1	182	1	0	0	0	0	1	0	0	0	14483	1116	39	1	669	1	SLC13A4	7	135376383	Missense_Mutation	SNP	G	TCGA-A8-A082-01A-11W-A019-09	5437204	135376383	23762280	7	11251										
GDAP1	0	genome.wustl.edu	37	chr8	75276279	75276279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ccctggcagacgtctcactcGctgtcacattgcatcgactg	9	15	2	1			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	8	75276279	75276279	G	A	SNP	GDAP1	ENST00000220822	human	ensembl	69_37n	1	known	missense	c.754	p.A252T	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381	110	0	0	75	104	57.78	-	-	-	A	75276279	G	A	75276279	3	1	182	1	0	0	0	0	1	0	0	0	6358	1087	38	1	776	1	GDAP1	8	75276279	Missense_Mutation	SNP	G	TCGA-A8-A082-01A-11W-A019-09		75276279	71087743	8	11252										
APTX	0	genome.wustl.edu	37	chr9	33001567	33001567	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ggctgacgaccgccttacctCcagaagtcggagacggacaa	12	13	0	3			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	9	33001567	33001567	C	A	SNP	APTX	ENST00000379819	human	ensembl	69_37n	-1	known	missense	c.36	p.W12C	0.439	superfamily_SMAD_FHA_domain	pfam_Histidine_triad_HIT,superfamily_HIT-like,superfamily_SMAD_FHA_domain,pfscan_Histidine_triad_HIT	-	no_errors	APTX	HGNC	ENSG00000137074	53	0	0	61	26	29.89	-	-	-	A	33001567	C	A	33001567	3	1	182	1	0	0	0	0	1	0	0	0	822	856	30	2	1075	2	APTX	9	33001567	Missense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09		33001567	108211864	9	11253										
COL27A1	0	genome.wustl.edu	37	chr9	116930472	116930472	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	cagtccagtttgaaggtgctCtctgccagttcagtatctac	9	11	3	1			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	9	116930472	116930472	C	G	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.637	p.L213V	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	56	0	0	38	18	32.14	-	-	-	G	116930472	C	G	116930472	3	3	182	1	0	0	0	0	1	0	0	0	3715	913	32	2	647	2	COL27A1	9	116930472	Missense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09	83928905	116930472	24282959	10	11254										
C11orf63	0	genome.wustl.edu	37	chr11	122828073	122828073	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ctttgtttctctgaacagacGcaaaaattaatacagcaaaa	5	8	1	2			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	11	122828073	122828073	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	silent	c.2013	p.T671	0.983	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	266	0	0	72	122	62.56	-	-	-	A	122828073	G	A	122828073	2	1	182	1	0	0	0	0	0	0	0	1	1665	1074	38	1		1	C11orf63	11	122828073	Silent	SNP	G	TCGA-A8-A082-01A-11W-A019-09		122828073	12178443	11	11255										
OAS2	0	genome.wustl.edu	37	chr12	113435383	113435383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	gtatgccctggagctgcttaCggtgtatgcctgggaacagg	15	9	0	0			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	12	113435383	113435383	C	T	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.686	p.T229M	0.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	235	0	0	196	135	40.66	-	-	-	T	113435383	C	T	113435383	3	4	182	1	0	0	0	0	1	0	0	0	10873	536	19	1	771	1	OAS2	12	113435383	Missense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09		113435383	20416512	12	11256										
LECT1	0	genome.wustl.edu	37	chr13	53313765	53313766	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	aatccctggcggtactcaccINSggggggctgcagaattccac							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	13	53313765	53313766	-	G	INS	LECT1	ENST00000377962	human	ensembl	69_37n	-1	known	frame_shift_ins	c.72_71	p.A25fs	1.000:1.000	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110	27	0	0	10	3	23.08	-	-	-	G	53313766	-	G	53313765	7	5	182	1	0	1	1	0	0	0	0	0	8766	666	23	0	960	0	LECT1	13	53313765	Frame_Shift_Ins	INS	-	TCGA-A8-A082-01A-11W-A019-09		53313765	61856113	13	11257										
FOXA1	0	genome.wustl.edu	37	chr14	38061240	38061240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	cgttctcgaacatgttgccgGagtccgggtgcagcgtccag	14	12	1	0			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	14	38061240	38061240	G	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.749	p.S250F	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	20	0	0	13	7	33.33	-	-	-	A	38061240	G	A	38061240	3	1	182	1	0	0	0	0	1	0	0	0	6035	1174	41	2	673	2	FOXA1	14	38061240	Missense_Mutation	SNP	G	TCGA-A8-A082-01A-11W-A019-09		38061240	69288300	14	11258										
MGA	0	genome.wustl.edu	37	chr15	41988487	41988487	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	atcctatactagagaaacagCtaaagaggcacaataaagtt	7	7	0	2			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	15	41988487	41988487	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.1279	p.L427V	0.964	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	377	0	0	293	163	35.75	-	-	-	G	41988487	C	G	41988487	3	3	182	1	0	0	0	0	1	0	0	0	9611	796	28	4	1285	4	MGA	15	41988487	Missense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09		41988487	60542905	15	11259										
PPL	0	genome.wustl.edu	37	chr16	4937211	4937211	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	gcataaacttcagtgaacttGgcggcaagtgctgcttcctg	11	10	1	1			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	16	4937211	4937211	G	A	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	silent	c.2532	p.A844	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	128	0	0	65	38	36.89	-	-	-	A	4937211	G	A	4937211	2	1	182	1	0	0	0	0	0	0	0	1	12411	1335	47	4		4	PPL	16	4937211	Silent	SNP	G	TCGA-A8-A082-01A-11W-A019-09		4937211	85417542	16	11260										
ARHGEF15	0	genome.wustl.edu	37	chr17	8224297	8224298	+	Frame_Shift_Ins	INS	-	-	C													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ttcttcaggcacccccaatgINScccccccaccctaatgcagg							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	17	8224297	8224298	-	C	INS	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	frame_shift_ins	c.2512_2513	p.P841fs	0.000:0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	43	0	0	46	6	11.54	-	-	-	C	8224298	-	C	8224297	7	5	182	1	0	1	1	0	0	0	0	0	900	1319	46	0	2570	0	ARHGEF15	17	8224297	Frame_Shift_Ins	INS	-	TCGA-A8-A082-01A-11W-A019-09		8224297	72970913	17	11261										
BPTF	0	genome.wustl.edu	37	chr17	65925453	65925453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ggcttcatctttttttaaggCgttgttcaagtacagcagaa	9	7	3	1			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	17	65925453	65925453	C	T	SNP	BPTF	ENST00000582467	human	ensembl	69_37n	1	novel	missense	c.649	p.R217C	0.966	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BPTF	HGNC	ENSG00000171634	76	0	0	41	31	41.33	-	-	-	T	65925453	C	T	65925453	3	4	182	1	0	0	0	0	1	0	0	0	1503	782	27	1	6452	1	BPTF	17	65925453	Missense_Mutation	SNP	C	TCGA-A8-A082-01A-11W-A019-09	57701156	65925453	15269757	18	11262										
POLD1	0	genome.wustl.edu	37	chr19	50906369	50906370	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ctgctcgctgggcctgcgctINSggggggagccggagcccttc							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	19	50906369	50906370	-	G	INS	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	frame_shift_ins	c.1030_1031	p.E346fs	1.000:1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	8	0	0	4	2	33.33	-	-	-	G	50906370	-	G	50906369	7	5	182	1	0	1	1	0	0	0	0	0	12264	1580	55	0	1060	0	POLD1	19	50906369	Frame_Shift_Ins	INS	-	TCGA-A8-A082-01A-11W-A019-09		50906369	8222614	19	11263										
MMP9	0	genome.wustl.edu	37	chr20	44640290	44640290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	tccaaggccaatcctactccGcctgcaccacggacggtcgc	9	18	0	0			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	20	44640290	44640290	G	A	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	missense	c.901	p.A301T	0.036	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	71	0	0	57	21	25.61	-	-	-	A	44640290	G	A	44640290	3	1	182	1	0	0	0	0	1	0	0	0	9741	1087	38	1	923	1	MMP9	20	44640290	Missense_Mutation	SNP	G	TCGA-A8-A082-01A-11W-A019-09		44640290	18385230	20	11264										
UTP14A	0	genome.wustl.edu	37	chrX	129059021	129059021	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	gagcttcccagacctgtgttAgaagggcagcagtcagagag	14	9	1	3			TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	X	129059021	129059021	A	G	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	silent	c.1599	p.L533	0.006	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	295	0	0	276	35	11.25	-	-	-	G	129059021	A	G	129059021	2	3	182	1	0	0	0	0	0	0	0	1	17192	417	15	5		5	UTP14A	23	129059021	Silent	SNP	A	TCGA-A8-A082-01A-11W-A019-09		129059021	26211539	21	11265										
SLC9A6	0	genome.wustl.edu	37	chrX	135080645	135080646	+	Frame_Shift_Ins	INS	-	-	T													0.0454545454545455	1	1	0.566445182724252	2.64341085271318	0	1	1	0	ttttttttttgtcagagacaINStttttttcgaaatcttgggt							TCGA-A8-A082-01A-11W-A019-09	TCGA-A8-A082-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	575d25ea-eae7-423a-9464-d3b2806bf9eb	576b6dc6-351b-4a61-b6e4-fbfda702de27	X	135080645	135080646	-	T	INS	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	frame_shift_ins	c.608_609	p.R206fs	1.000:1.000	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	214	0	0	153	47	23.5	-	-	-	T	135080646	-	T	135080645	7	5	182	1	0	1	1	0	0	0	0	0	14807	217	8	0	622	0	SLC9A6	23	135080645	Frame_Shift_Ins	INS	-	TCGA-A8-A082-01A-11W-A019-09	6021624	135080645	20189915	22	11266										
PBXIP1	0	genome.wustl.edu	37	chr1	154919991	154919991	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	gctggggacactgtcaggagGcactggggcctgcagctgtt	17	10	1	0			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	1	154919991	154919991	G	C	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	missense	c.772	p.P258A	0.000	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	46	0	0	24	13	35.14	-	-	-	C	154919991	G	C	154919991	3	2	183	1	0	0	0	0	1	0	0	0	11569	1203	42	4	1435	4	PBXIP1	1	154919991	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09		154919991	94330630	1	11267										
C1orf101	0	genome.wustl.edu	37	chr1	244735733	244735733	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tgcatttatggacaaattacAcaacaagagcattcattttc	5	8	1	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	1	244735733	244735733	A	T	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1609	p.T537S	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	134	0	0	192	65	25.29	-	-	-	T	244735733	A	T	244735733	3	4	183	1	0	0	0	0	1	0	0	0	1995	159	6	5	1651	5	C1orf101	1	244735733	Missense_Mutation	SNP	A	TCGA-A8-A083-01A-21W-A019-09	89815742	244735733	4514888	2	11268										
NCL	0	genome.wustl.edu	37	chr2	232326283	232326283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	cgtcatcgtcatcctcatcaTcttcgtcatcctcatcgtcc	4	17	7	0			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	2	232326283	232326283	T	C	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.581	p.D194G	0.098	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	116	0	0	28	14	33.33	-	-	-	C	232326283	T	C	232326283	3	2	183	1	0	0	0	0	1	0	0	0	10298	1435	50	5	1599	5	NCL	2	232326283	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09		232326283	10873090	3	11269										
LARS2	0	genome.wustl.edu	37	chr3	45583431	45583431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tcctgcagcagcctgaggttGtccagatggcagttctggta	13	10	1	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	3	45583431	45583431	G	T	SNP	LARS2	ENST00000265537	human	ensembl	69_37n	1	known	missense	c.2515	p.V839F	0.921	pfam_V/L/I-tRNA-synth_anticodon-bd,tigrfam_Leu-tRNA-synth_Ia_bac/mito	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-synth_Ia_bac/mito,tigrfam_Leu-tRNA-synth_Ia_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376	34	0	0	45	17	27.42	-	-	-	T	45583431	G	T	45583431	3	4	183	1	0	0	0	0	1	0	0	0	8689	1377	48	4	2589	4	LARS2	3	45583431	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09		45583431	152438999	4	11270										
LPP	0	genome.wustl.edu	37	chr3	188592262	188592262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ccgccaaggcgagcactgacCtttagattcagtcacctgtt	9	13	2	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	3	188592262	188592262	C	G	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.1834	p.L612V	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	124	0	0	105	51	32.28	-	-	-	G	188592262	C	G	188592262	3	3	183	1	0	0	0	0	1	0	0	0	8989	681	24	4	1868	4	LPP	3	188592262	Missense_Mutation	SNP	C	TCGA-A8-A083-01A-21W-A019-09	143008831	188592262	9430168	5	11271										
DLG1	0	genome.wustl.edu	37	chr3	196867092	196867092	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	agtcatctccaatgtgtgggTtgtccgtacctcctgcaatg	10	11	2	0			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	3	196867092	196867092	T	G	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.731	p.N244T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	356	0	0	371	208	35.74	-	-	-	G	196867092	T	G	196867092	3	3	183	1	0	0	0	0	1	0	0	0	4590	1725	60	5	2159	5	DLG1	3	196867092	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09	8274830	196867092	1155338	6	11272										
CENPE	0	genome.wustl.edu	37	chr4	104062041	104062041	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tgagtgtctcctctactcttCttagattatctctttctttc	4	11	6	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	4	104062041	104062041	C	A	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.5684	p.R1895I	0.002	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	168	0	0	141	68	32.38	-	-	-	A	104062041	C	A	104062041	3	1	183	1	0	0	0	0	1	0	0	0	3259	913	32	2	2477	2	CENPE	4	104062041	Missense_Mutation	SNP	C	TCGA-A8-A083-01A-21W-A019-09		104062041	87092235	7	11273										
GFM2	0	genome.wustl.edu	37	chr5	74026192	74026192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ttcgatcatgaataatctctAtatgtaactcccccatacca	3	12	2	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	5	74026192	74026192	A	G	SNP	GFM2	ENST00000296805	human	ensembl	69_37n	-1	known	missense	c.1619	p.I540T	1.000	superfamily_Elongation_fac_G/III/V	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347	232	0	0	228	79	25.65	-	-	-	G	74026192	A	G	74026192	3	3	183	1	0	0	0	0	1	0	0	0	6394	449	16	5	740	5	GFM2	5	74026192	Missense_Mutation	SNP	A	TCGA-A8-A083-01A-21W-A019-09		74026192	106889068	8	11274										
PCDHA7	0	genome.wustl.edu	37	chr5	140215913	140215913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	caccgcgccaccgccttctgGtgcttgtgaaggaccacggg	13	15	1	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	5	140215913	140215913	G	T	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.1945	p.V649L	0.847	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	21	0	0	3	8	72.73	-	-	-	T	140215913	G	T	140215913	3	4	183	1	0	0	0	0	1	0	0	0	11602	1261	44	4	1947	4	PCDHA7	5	140215913	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09	66189721	140215913	40699347	9	11275										
STXBP5	0	genome.wustl.edu	37	chr6	147684477	147684477	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	cttctatattttaggtactaTattgaggttaaaaggtgcaa	8	4	1	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	6	147684477	147684477	T	A	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.2552	p.I851K	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	147	1	0.68	127	54	29.83	-	-	-	A	147684477	T	A	147684477	3	1	183	1	0	0	0	0	1	0	0	0	15447	1406	49	5	2646	5	STXBP5	6	147684477	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09		147684477	23430590	10	11276										
C7orf31	0	genome.wustl.edu	37	chr7	25176162	25176162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tagacagcaagctctgttctTctatgatcttctcttcaata	5	10	6	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	7	25176162	25176162	T	C	SNP	C7orf31	ENST00000283905	human	ensembl	69_37n	-1	known	missense	c.1202	p.E401G	0.392	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	268	1	0.37	343	174	33.59	-	-	-	C	25176162	T	C	25176162	3	2	183	1	0	0	0	0	1	0	0	0	2410	1783	62	5	574	5	C7orf31	7	25176162	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09		25176162	133962501	11	11277										
MMP16	0	genome.wustl.edu	37	chr8	89339325	89339326	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ccacattgaaatactgctccINSgttccgcagactgtagcaca							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	8	89339325	89339326	-	T	INS	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	frame_shift_ins	c.111_110	p.E38fs	0.993:1.000	pirsf_Pept_M10A_matrix_strom	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	70	0	0	13	6	31.58	-	-	-	T	89339326	-	T	89339325	7	5	183	1	0	1	1	0	0	0	0	0	9726	639	23	0	1908	0	MMP16	8	89339325	Frame_Shift_Ins	INS	-	TCGA-A8-A083-01A-21W-A019-09		89339325	57024697	12	11278										
NOL6	0	genome.wustl.edu	37	chr9	33464042	33464042	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tatggggttgaacctgggctGagggtccatcctgtgtccac	14	10	0	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	9	33464042	33464042	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.2897	p.S966L	0.834	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	96	0	0	35	20	36.36	-	-	-	A	33464042	G	A	33464042	3	1	183	1	0	0	0	0	1	0	0	0	10597	1294	45	2	563	2	NOL6	9	33464042	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09		33464042	107749389	13	11279										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	51	0	0	49	22	30.14	-	-	-	-	8111434	CA	-	8111433	8	5	183	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-A8-A083-01A-21W-A019-09		8111433	127423314	14	11280										
POLR1D	0	genome.wustl.edu	37	chr13	28197146	28197146	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	agaccataccctaggaaattCtctacgttacatgatcatga	6	10	2	3			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	13	28197146	28197146	C	T	SNP	POLR1D	ENST00000302979	human	ensembl	69_37n	1	known	missense	c.161	p.S54F	1.000	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	-	no_errors	POLR1D	HGNC	ENSG00000186184	114	0	0	11	7	38.89	-	-	-	T	28197146	C	T	28197146	3	4	183	1	0	0	0	0	1	0	0	0	12286	913	32	2	167	2	POLR1D	13	28197146	Missense_Mutation	SNP	C	TCGA-A8-A083-01A-21W-A019-09		28197146	86972732	15	11281										
WDR72	0	genome.wustl.edu	37	chr15	53907944	53907944	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	gaccctgaagctttaaaataTtgaggtgcttaatgcaaaga	9	6	0	3			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	15	53907944	53907944	T	C	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.2459	p.N820S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	644	0	0	741	128	14.7	-	-	-	C	53907944	T	C	53907944	3	2	183	1	0	0	0	0	1	0	0	0	17419	1493	52	5	873	5	WDR72	15	53907944	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09		53907944	48623448	16	11282										
PSMB6	0	genome.wustl.edu	37	chr17	4701319	4701319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ggcaggtgtactcagtgcctAtggggggtatgatggtaagg	18	5	1	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	17	4701319	4701319	A	G	SNP	PSMB6	ENST00000270586	human	ensembl	69_37n	1	known	missense	c.448	p.M150V	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB6	HGNC	ENSG00000142507	114	1	0.87	70	19	21.11	-	-	-	G	4701319	A	G	4701319	3	3	183	1	0	0	0	0	1	0	0	0	12761	449	16	5	466	5	PSMB6	17	4701319	Missense_Mutation	SNP	A	TCGA-A8-A083-01A-21W-A019-09		4701319	76493891	17	11283										
DNAH9	0	genome.wustl.edu	37	chr17	11865565	11865565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tcatggaaggtgcctgctggGacacacaggtaaagcttgga	14	8	1	0			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	17	11865565	11865565	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.13225	p.D4409N	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	173	0	0	179	46	20.26	-	-	-	A	11865565	G	A	11865565	3	1	183	1	0	0	0	0	1	0	0	0	4643	1174	41	2	13495	2	DNAH9	17	11865565	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09	7164246	11865565	69329645	18	11284										
HDAC5	0	genome.wustl.edu	37	chr17	42169118	42169118	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ggcctgcagccctagggagaTgttgggcagagaaggagacg							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	17	42169118	42169118	T	-	DEL	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	frame_shift_del	c.1117	p.I373fs	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	13	0	0	5	3	37.5	-	-	-	-	42169118	T	-	42169118	7	5	183	1	0	1	0	1	0	0	0	0	7061	1464	51	0	2326	0	HDAC5	17	42169118	Frame_Shift_Del	DEL	T	TCGA-A8-A083-01A-21W-A019-09	30303553	42169118	39026092	19	11285										
C18orf21	0	genome.wustl.edu	37	chr18	33552802	33552802	+	RNA	DEL	G	G	-													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	aggggaagcgggaggcgagcGggtaggtgttcctttgctcc							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	18	33552802	33552802	G	-	DEL	C18orf21	ENST00000593210	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	C18orf21	HGNC	ENSG00000141428	57	0	0	16	2	11.11	-	-	-	-	33552802	G	-	33552802	6	5	183	0	1	1	0	1	0	0	0	0	1914	1131	39	0		0	C18orf21	18	33552802	RNA	DEL	G	TCGA-A8-A083-01A-21W-A019-09		33552802	44524446	20	11286										
MUC16	0	genome.wustl.edu	37	chr19	9063372	9063372	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tgctcaaatttgcaggtgagTtggttacaggttctgagctt	12	6	2	2			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	19	9063372	9063372	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.24074	p.N8025S	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	191	0	0	316	171	34.97	-	-	-	C	9063372	T	C	9063372	3	2	183	1	0	0	0	0	1	0	0	0	10045	1725	60	5	19777	5	MUC16	19	9063372	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09		9063372	50065611	21	11287										
DOCK6	0	genome.wustl.edu	37	chr19	11325233	11325234	+	Frame_Shift_Ins	INS	-	-	CCAT													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tggatcaagccctacctgcaINScgatgatctccagtgtgtcc							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	19	11325233	11325234	-	CCAT	INS	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4199_4198	p.V1400fs	1.000:1.000	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	19	0	0	19	7	26.92	-	-	-	CCAT	11325234	-	CCAT	11325233	7	5	183	1	0	1	1	0	0	0	0	0	4726	159	6	0	2008	0	DOCK6	19	11325233	Frame_Shift_Ins	INS	-	TCGA-A8-A083-01A-21W-A019-09	2261861	11325233	47803750	22	11288										
APOBEC3A	0	genome.wustl.edu	37	chr22	39357438	39357438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	cggccgccatgcggagctgcGcttcttggacctggttcctt	13	14	1	0			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	22	39357438	39357438	G	A	SNP	APOBEC3A	ENST00000249116	human	ensembl	69_37n	1	known	missense	c.221	p.R74H	0.001	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3A	HGNC	ENSG00000128383	76	0	0	56	22	27.85	-	-	-	A	39357438	G	A	39357438	3	1	183	1	0	0	0	0	1	0	0	0	791	1087	38	1	231	1	APOBEC3A	22	39357438	Missense_Mutation	SNP	G	TCGA-A8-A083-01A-21W-A019-09		39357438	11947128	23	11289										
MED12	0	genome.wustl.edu	37	chrX	70340968	70340968	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ggtggcaatccggcagtgggAttacaccgagaagctggcca	15	10	0	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	X	70340968	70340968	A	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.701	p.D234V	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	219	0	0	95	81	45.76	-	-	-	T	70340968	A	T	70340968	3	4	183	1	0	0	0	0	1	0	0	0	9499	333	12	5	719	5	MED12	23	70340968	Missense_Mutation	SNP	A	TCGA-A8-A083-01A-21W-A019-09		70340968	84929592	24	11290										
DCAF12L2	0	genome.wustl.edu	37	chrX	125298649	125298649	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	actctcccatgccaccaaagTagttcacccagacgtcatct	5	16	4	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	X	125298649	125298649	T	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	69_37n	-1	known	missense	c.1259	p.Y420F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	114	0	0	18	9	33.33	-	-	-	A	125298649	T	A	125298649	3	1	183	1	0	0	0	0	1	0	0	0	4297	1638	57	5	136	5	DCAF12L2	23	125298649	Missense_Mutation	SNP	T	TCGA-A8-A083-01A-21W-A019-09	54957681	125298649	29971911	25	11291										
FAM122B	0	genome.wustl.edu	37	chrX	133923290	133923290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	tctgttcaccatatccaggcCttcttcctgcaaagacaaac	5	14	3	1			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	X	133923290	133923290	C	T	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	missense	c.241	p.G81S	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	149	0	0	97	27	21.6	-	-	-	T	133923290	C	T	133923290	3	4	183	1	0	0	0	0	1	0	0	0	5460	681	24	4	664	4	FAM122B	23	133923290	Missense_Mutation	SNP	C	TCGA-A8-A083-01A-21W-A019-09	8624641	133923290	21347270	26	11292										
SLC9A6	0	genome.wustl.edu	37	chrX	135126695	135126695	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	catatggagattctactgtgAacactgaaccggccacatcc	8	12	1	3			TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	X	135126695	135126695	A	T	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	missense	c.1918	p.N640Y	1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	153	0	0	139	70	33.49	-	-	-	T	135126695	A	T	135126695	3	4	183	1	0	0	0	0	1	0	0	0	14807	246	9	5	1980	5	SLC9A6	23	135126695	Missense_Mutation	SNP	A	TCGA-A8-A083-01A-21W-A019-09	1203405	135126695	20143865	27	11293										
SLITRK2	0	genome.wustl.edu	37	chrX	144905128	144905129	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	2	0.661586686765049	1.70656370656371	0	2.38918918918919	0.4	0.991179622791967	0	ctgtctataagaatgacctcINSttagaatacagttctttgga							TCGA-A8-A083-01A-21W-A019-09	TCGA-A8-A083-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1904e458-1a6c-4e91-88cc-10ee154ded5b	a3d7f86d-e67c-4588-9a94-f6c98ed06faa	X	144905128	144905129	-	T	INS	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	frame_shift_ins	c.1185_1186	p.L395fs	0.927:0.740	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	201	0	0	38	22	36.67	-	-	-	T	144905129	-	T	144905128	7	5	183	1	0	1	1	0	0	0	0	0	14832	900	32	0	1187	0	SLITRK2	23	144905128	Frame_Shift_Ins	INS	-	TCGA-A8-A083-01A-21W-A019-09	9778433	144905128	10365432	28	11294										
DLGAP3	0	genome.wustl.edu	37	chr1	35332720	35332720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gaacttgagggtcacatcctCgatggagagctgtaggaggt	15	7	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	35332720	35332720	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	69_37n	-1	known	missense	c.2650	p.E884K	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	50	0	0	20	17	45.95	-	-	-	T	35332720	C	T	35332720	3	4	184	1	0	0	0	0	1	0	0	0	4597	893	31	1	297	1	DLGAP3	1	35332720	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		35332720	213917901	1	11295										
GRIK3	0	genome.wustl.edu	37	chr1	37307537	37307537	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ccgaaacatgacgaagggctCctcctgcagagacagatggg	13	11	0	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	37307537	37307537	C	A	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	nonsense	c.1330	p.E444*	1.000	smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	47	0	0	33	26	44.07	-	-	-	A	37307537	C	A	37307537	4	1	184	1	0	0	0	0	0	1	0	0	6826	864	30	2	1457	2	GRIK3	1	37307537	Nonsense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	1974817	37307537	211943084	2	11296										
BTF3L4	0	genome.wustl.edu	37	chr1	52530605	52530605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tgaataatatagctggtattGaagaggtatgatcactttgc	10	4	1	4			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	52530605	52530605	G	A	SNP	BTF3L4	ENST00000313334	human	ensembl	69_37n	1	known	missense	c.163	p.E55K	1.000	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	BTF3L4	HGNC	ENSG00000134717	74	0	0	57	15	20.83	-	-	-	A	52530605	G	A	52530605	3	1	184	1	0	0	0	0	1	0	0	0	1561	1291	45	2	169	2	BTF3L4	1	52530605	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	15223068	52530605	196720016	3	11297										
CRNN	0	genome.wustl.edu	37	chr1	152382287	152382287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cctgcccttctgtcacacagCgccttgggtgagtgctgctc	11	15	2	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	152382287	152382287	C	T	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	missense	c.1271	p.R424H	0.001	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	201	0	0	232	99	29.91	-	-	-	T	152382287	C	T	152382287	3	4	184	1	0	0	0	0	1	0	0	0	3922	768	27	1	220	1	CRNN	1	152382287	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	99851682	152382287	96868334	4	11298										
PAPPA2	0	genome.wustl.edu	37	chr1	176738882	176738882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gggaaccaaatttctgaaacGctgctcaatctcttgtgtcc	8	11	3	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	176738882	176738882	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4463	p.R1488H	1.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	209	0	0	182	403	68.54	-	-	-	A	176738882	G	A	176738882	3	1	184	1	0	0	0	0	1	0	0	0	11506	1087	38	1	4574	1	PAPPA2	1	176738882	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	24356595	176738882	72511739	5	11299										
PRKCE	0	genome.wustl.edu	37	chr2	46411965	46411965	+	Missense_Mutation	SNP	T	T	A													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cgaagcaattgtaaagcagaTcaaccaggaggaattcaaag							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	46411965	46411965	T	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	missense	c.2159	p.I720N	1.000	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	101	0	0	60	48	44.44	-	-	-	A	46411965	T	A	46411965	3	1	184	1	0	0	0	0	1	0	0	0	12592	1435	50	5	2217	5	PRKCE	2	46411965	Missense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09		46411965	196787408	6	11300	136	2								
PRKCE	0	genome.wustl.edu	37	chr2	46411966	46411966	+	Silent	SNP	C	C	T													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gaagcaattgtaaagcagatCaaccaggaggaattcaaagg							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	46411966	46411966	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	silent	c.2160	p.I720	1.000	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	102	0	0	60	48	44.44	-	-	-	T	46411966	C	T	46411966	2	4	184	1	0	0	0	0	0	0	0	1	12592	816	29	2		2	PRKCE	2	46411966	Silent	SNP	C	TCGA-A8-A084-01A-21W-A019-09	1	46411966	196787407	7	11301	136	2								
PTPN4	0	genome.wustl.edu	37	chr2	120718455	120718455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cattaccacacacttgtacaGatttttggcagatgacttgg	8	9	0	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	120718455	120718455	G	A	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.2206	p.D736N	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	252	0	0	185	125	40.32	-	-	-	A	120718455	G	A	120718455	3	1	184	1	0	0	0	0	1	0	0	0	12873	942	33	2	2292	2	PTPN4	2	120718455	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	74306489	120718455	122480918	8	11302										
UGT1A7	0	genome.wustl.edu	37	chr2	234591216	234591216	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gagagagtatggaaccacatCatgcacttggaggaacattt	11	7	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	234591216	234591216	C	G	SNP	UGT1A7	ENST00000485022	human	ensembl	69_37n	1	putative	nonsense	c.203	p.S68*	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UGT1A7	HGNC	ENSG00000244122	965	0	0	953	203	17.56	-	-	-	G	234591216	C	G	234591216	4	3	184	1	0	0	0	0	0	1	0	0	17047	816	29	2	635	2	UGT1A7	2	234591216	Nonsense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	113872761	234591216	8608157	9	11303										
NCK1	0	genome.wustl.edu	37	chr3	136667105	136667105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tttttttctcttttagccaaAtgatttctcagtatcactaa	3	8	3	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	136667105	136667105	A	G	SNP	NCK1	ENST00000288986	human	ensembl	69_37n	1	known	missense	c.944	p.N315S	1.000	pfam_SH2,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,prints_SH2	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092	225	0	0	181	133	42.36	-	-	-	G	136667105	A	G	136667105	3	3	184	1	0	0	0	0	1	0	0	0	10291	101	4	5	954	5	NCK1	3	136667105	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09		136667105	61355325	10	11304										
SLC9A9	0	genome.wustl.edu	37	chr3	142985726	142985726	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ctggtaatttatggctagttCatcctggtttacaatgcatt	8	7	1	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	142985726	142985726	C	T	SNP	SLC9A9	ENST00000316549	human	ensembl	69_37n	-1	known	missense	c.1756	p.E586K	0.967	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804	103	0	0	83	20	19.42	-	-	-	T	142985726	C	T	142985726	3	4	184	1	0	0	0	0	1	0	0	0	14810	835	29	2	185	2	SLC9A9	3	142985726	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	6318621	142985726	55036704	11	11305										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	119	0	0	86	83	49.11	-	-	-	A	178936082	G	A	178936082	3	1	184	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	35950356	178936082	19086348	12	11306										
IGF2BP2	0	genome.wustl.edu	37	chr3	185367245	185367245	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gtggaagagggcactctgatAtgcgcttccagcttcacttc	11	11	2	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	185367245	185367245	A	C	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	missense	c.1539	p.H513Q	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	48	0	0	53	40	42.55	-	-	-	C	185367245	A	C	185367245	3	2	184	1	0	0	0	0	1	0	0	0	7628	446	16	5	272	5	IGF2BP2	3	185367245	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09	6431163	185367245	12655185	13	11307										
TECRL	0	genome.wustl.edu	37	chr4	65180391	65180391	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cactgggtggcgtaatcttcTagcactctcttttccatcat	7	12	4	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	65180391	65180391	T	A	SNP	TECRL	ENST00000381210	human	ensembl	69_37n	-1	known	nonsense	c.526	p.R176*	0.030	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	29	0	0	43	7	14	-	-	-	A	65180391	T	A	65180391	4	1	184	1	0	0	0	0	0	1	0	0	15841	1530	53	5	597	5	TECRL	4	65180391	Nonsense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09		65180391	125973885	14	11308										
ANK2	0	genome.wustl.edu	37	chr4	114277716	114277716	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gcagtggggaggatgaaagtGgtgtccctgtgttagtaact	16	5	0	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	114277716	114277716	G	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.7942	p.G2648R	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	391	0	0	270	98	26.63	-	-	-	C	114277716	G	C	114277716	3	2	184	1	0	0	0	0	1	0	0	0	621	1348	47	4	8157	4	ANK2	4	114277716	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	49097325	114277716	76876560	15	11309										
C4orf51	0	genome.wustl.edu	37	chr4	146650349	146650350	+	Frame_Shift_Ins	INS	-	-	T													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	atttgggattttggtgattgINSttttccgacacctccaaatt							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	146650349	146650350	-	T	INS	C4orf51	ENST00000438731	human	ensembl	69_37n	1	known	frame_shift_ins	c.395_396	p.P134fs	0.000:0.002	NULL	NULL	-	no_errors	C4orf51	HGNC	ENSG00000237136	74	0	0	44	12	21.43	-	-	-	T	146650350	-	T	146650349	7	5	184	1	0	1	1	0	0	0	0	0	2298	1377	48	0	409	0	C4orf51	4	146650349	Frame_Shift_Ins	INS	-	TCGA-A8-A084-01A-21W-A019-09	32372633	146650349	44503927	16	11310										
CDH9	0	genome.wustl.edu	37	chr5	26881732	26881732	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cagcaaacaacacgactaaaActattaataagaaatgggaa	6	7	0	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	26881732	26881732	A	T	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.1883	p.I628N	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	176	0	0	154	43	21.83	-	-	-	T	26881732	A	T	26881732	3	4	184	1	0	0	0	0	1	0	0	0	3146	57	2	5	490	5	CDH9	5	26881732	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09		26881732	154033528	17	11311										
ERBB2IP	0	genome.wustl.edu	37	chr5	65370887	65370887	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ggacagatgggccagcctctCaggcctcaggcaaattatag	12	11	2	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	65370887	65370887	C	G	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	silent	c.3792	p.L1264	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	300	0	0	194	74	27.61	-	-	-	G	65370887	C	G	65370887	2	3	184	1	0	0	0	0	0	0	0	1	5244	813	29	2		2	ERBB2IP	5	65370887	Silent	SNP	C	TCGA-A8-A084-01A-21W-A019-09	38489155	65370887	115544373	18	11312										
CHSY3	0	genome.wustl.edu	37	chr5	129243939	129243939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	agccgagaagttctcaggagGatggtgccacatattggtga	14	7	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	129243939	129243939	G	T	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	missense	c.972	p.R324S	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	40	0	0	22	12	35.29	-	-	-	T	129243939	G	T	129243939	3	4	184	1	0	0	0	0	1	0	0	0	3442	1165	41	2	978	2	CHSY3	5	129243939	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	63873052	129243939	51671321	19	11313										
FAM13B	0	genome.wustl.edu	37	chr5	137354686	137354686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	aacgtggcggactatgaatgGaacctcattgtctggatgtc	12	8	2	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	137354686	137354686	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.115	p.P39S	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	113	0	0	64	79	55.24	-	-	-	A	137354686	G	A	137354686	3	1	184	1	0	0	0	0	1	0	0	0	5493	1174	41	2	2786	2	FAM13B	5	137354686	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	8110747	137354686	43560574	20	11314										
PCDHA13	0	genome.wustl.edu	37	chr5	140262514	140262514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ccagtgatggaggtaaacccGagctgactggcacagttcag	13	10	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	140262514	140262514	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.661	p.E221K	0.008	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	155	0	0	46	29	38.67	-	-	-	A	140262514	G	A	140262514	3	1	184	1	0	0	0	0	1	0	0	0	11596	1059	37	1	663	1	PCDHA13	5	140262514	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	2907828	140262514	40652746	21	11315										
TCOF1	0	genome.wustl.edu	37	chr5	149777996	149777996	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gattctgagtcaccgtcccaGaagaaaaagaagaaaaaggt	10	7	2	5			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	149777996	149777996	G	A	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	silent	c.4533	p.Q1511	0.998	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	152	0	0	40	73	64.6	-	-	-	A	149777996	G	A	149777996	2	1	184	1	0	0	0	0	0	0	0	1	15803	933	33	2		2	TCOF1	5	149777996	Silent	SNP	G	TCGA-A8-A084-01A-21W-A019-09	9515482	149777996	31137264	22	11316										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32552156	32552156	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	aggctgccacaggaaacgtgCtgtggggacacgaaccatcc	13	12	0	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	6	32552156	32552156	C	T	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	splice_site	c.101-1	e2-1	0.636	-	-	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	12	0	0	9	4	30.77	-	-	-	T	32552156	C	T	32552156	5	4	184	1	0	0	0	0	0	0	1	0	7259	811	28	4	720	4	HLA-DRB1	6	32552156	Splice_Site	SNP	C	TCGA-A8-A084-01A-21W-A019-09		32552156	138562911	23	11317										
AKD1	0	genome.wustl.edu	37	chr6	109815203	109815203	+	Frame_Shift_Del	DEL	A	A	-													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cctttgagatgaagtgctatAtatagcagtgcagatctcct							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	6	109815203	109815203	A	-	DEL	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	frame_shift_del	c.5514	p.Y1838fs	0.078	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	128	0	0	223	36	13.74	-	-	-	-	109815203	A	-	109815203	7	5	184	1	0	1	0	1	0	0	0	0	460	456	16	0	229	0	AKD1	6	109815203	Frame_Shift_Del	DEL	A	TCGA-A8-A084-01A-21W-A019-09	77263047	109815203	61299864	24	11318										
CADPS2	0	genome.wustl.edu	37	chr7	122269330	122269330	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ttttatctgccaattgcagcCggccatcaagttcccttctg	7	13	3	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	7	122269330	122269330	C	G	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.839	p.R280P	0.999	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	64	0	0	50	48	48.98	-	-	-	G	122269330	C	G	122269330	3	3	184	1	0	0	0	0	1	0	0	0	2596	652	23	3	3203	3	CADPS2	7	122269330	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		122269330	36869333	25	11319										
MPDZ	0	genome.wustl.edu	37	chr9	13175790	13175790	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tgctatattaatagtcctttCaaaagattctttagatacat	4	6	2	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	13175790	13175790	C	G	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.3016	p.E1006Q	1.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	35	0	0	29	17	36.96	-	-	-	G	13175790	C	G	13175790	3	3	184	1	0	0	0	0	1	0	0	0	9794	835	29	2	3213	2	MPDZ	9	13175790	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		13175790	128037641	26	11320										
MPDZ	0	genome.wustl.edu	37	chr9	13176329	13176329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	caccgaaggtgtattctcatCctgtctttgcaggagattct	9	10	3	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	13176329	13176329	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.2737	p.D913N	0.021	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	45	0	0	34	22	39.29	-	-	-	T	13176329	C	T	13176329	3	4	184	1	0	0	0	0	1	0	0	0	9794	855	30	2	3496	2	MPDZ	9	13176329	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	539	13176329	128037102	27	11321										
TESK1	0	genome.wustl.edu	37	chr9	35609609	35609610	+	Frame_Shift_Ins	INS	-	-	C													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tttggcttcctgtccatgtgINScccccgccccacaccagctg							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	35609609	35609610	-	C	INS	TESK1	ENST00000336395	human	ensembl	69_37n	1	known	frame_shift_ins	c.1751_1752	p.R586fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140	25	0	0	22	3	12	-	-	-	C	35609610	-	C	35609609	7	5	184	1	0	1	1	0	0	0	0	0	15862	1319	46	0	1789	0	TESK1	9	35609609	Frame_Shift_Ins	INS	-	TCGA-A8-A084-01A-21W-A019-09	22433280	35609609	105603822	28	11322										
DAPK1	0	genome.wustl.edu	37	chr9	90256921	90256921	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ggcacttagtagaaaagcatCagcagtaaacatggagaaat	10	6	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	90256921	90256921	C	G	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	nonsense	c.866	p.S289*	0.997	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	281	0	0	171	88	33.85	-	-	-	G	90256921	C	G	90256921	4	3	184	1	0	0	0	0	0	1	0	0	4267	838	29	2	900	2	DAPK1	9	90256921	Nonsense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	54647312	90256921	50956510	29	11323										
GBF1	0	genome.wustl.edu	37	chr10	104135342	104135342	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ggcagatgcacctgatgccgGtaagccctttcccagggaga	13	12	0	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	10	104135342	104135342	G	A	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	splice_site	c.3883+1	e29+1	1.000	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862	76	0	0	42	15	26.32	-	-	-	A	104135342	G	A	104135342	5	1	184	1	0	0	0	0	0	0	1	0	6321	1275	44	4	3998	4	GBF1	10	104135342	Splice_Site	SNP	G	TCGA-A8-A084-01A-21W-A019-09		104135342	31399405	30	11324										
FGFR2	0	genome.wustl.edu	37	chr10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tgtgtgcaggctccaagaagAtttatgatattcttgtgttt	10	5	1	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	10	123258034	123258034	A	T	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1650	p.N550K	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	68	0	0	37	89	70.08	-	-	-	T	123258034	A	T	123258034	3	4	184	1	0	0	0	0	1	0	0	0	5912	330	12	5	950	5	FGFR2	10	123258034	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09	19122692	123258034	12276713	31	11325										
OR52B2	0	genome.wustl.edu	37	chr11	6190763	6190763	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gaggaatattacgcccaaaaTgatgggtcaataaggtaaag	11	5	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	6190763	6190763	T	G	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	missense	c.794	p.H265P	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	186	0	0	135	105	43.75	-	-	-	G	6190763	T	G	6190763	3	3	184	1	0	0	0	0	1	0	0	0	11184	1464	51	5	180	5	OR52B2	11	6190763	Missense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09		6190763	128815753	32	11326										
DYNC2H1	0	genome.wustl.edu	37	chr11	103270428	103270429	+	Frame_Shift_Ins	INS	-	-	CGAT													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cagaaagtgcctcctcctaaINScgatcgacaaggatctccaa							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	103270428	103270429	-	CGAT	INS	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	frame_shift_ins	c.12215_12216	p.Q4075fs	0.961:0.957	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	55	0	0	92	37	28.68	-	-	-	CGAT	103270429	-	CGAT	103270428	7	5	184	1	0	1	1	0	0	0	0	0	4881	43	2	0	12553	0	DYNC2H1	11	103270428	Frame_Shift_Ins	INS	-	TCGA-A8-A084-01A-21W-A019-09	97079665	103270428	31736088	33	11327										
ESAM	0	genome.wustl.edu	37	chr11	124628269	124628269	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tcctccttttctttctgtttGaagaaccacatcacaaaggg	6	11	3	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	124628269	124628269	G	A	SNP	ESAM	ENST00000278927	human	ensembl	69_37n	-1	known	silent	c.225	p.F75	0.065	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ESAM	HGNC	ENSG00000149564	30	0	0	15	6	28.57	-	-	-	A	124628269	G	A	124628269	2	1	184	1	0	0	0	0	0	0	0	1	5284	1281	45	2		2	ESAM	11	124628269	Silent	SNP	G	TCGA-A8-A084-01A-21W-A019-09	21357841	124628269	10378247	34	11328										
PDE3A	0	genome.wustl.edu	37	chr12	20766493	20766493	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gtgtgcacatccttgagagcCgtgagcaacttgctcagcac	11	12	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	20766493	20766493	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.1128	p.A376	0.083	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	154	0	0	173	39	18.4	-	-	-	T	20766493	C	T	20766493	2	4	184	1	0	0	0	0	0	0	0	1	11710	639	23	1		1	PDE3A	12	20766493	Silent	SNP	C	TCGA-A8-A084-01A-21W-A019-09		20766493	113085402	35	11329										
YAF2	0	genome.wustl.edu	37	chr12	42554570	42554570	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tgtaataatgactgtcagatCtccaacagtaacttccaaat	5	9	2	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	42554570	42554570	C	T	SNP	YAF2	ENST00000442791	human	ensembl	69_37n	-1	known	missense	c.436	p.D146N	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	YAF2	HGNC	ENSG00000015153	87	0	0	70	28	28.57	-	-	-	T	42554570	C	T	42554570	3	4	184	1	0	0	0	0	1	0	0	0	17562	913	32	2	182	2	YAF2	12	42554570	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	21788077	42554570	91297325	36	11330										
KRT2	0	genome.wustl.edu	37	chr12	53041976	53041976	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ccttgctgtggtacagggccTccgcttcttccttgctcctc	9	16	1	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	53041976	53041976	T	A	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	missense	c.1103	p.E368V	0.940	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	191	0	0	111	64	36.16	-	-	-	A	53041976	T	A	53041976	3	1	184	1	0	0	0	0	1	0	0	0	8510	1551	54	5	836	5	KRT2	12	53041976	Missense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09	10487406	53041976	80809919	37	11331										
SSH1	0	genome.wustl.edu	37	chr12	109186215	109186215	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	acctgcagcaaggagccgctCcgacctttgggactcccaaa	10	15	0	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	109186215	109186215	C	T	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	silent	c.1740	p.R580	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	63	0	0	49	44	47.31	-	-	-	T	109186215	C	T	109186215	2	4	184	1	0	0	0	0	0	0	0	1	15275	842	30	2		2	SSH1	12	109186215	Silent	SNP	C	TCGA-A8-A084-01A-21W-A019-09	56144239	109186215	24665680	38	11332										
TBX3	0	genome.wustl.edu	37	chr12	115120672	115120672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cttgtgaaactgatcccaaaGttctttagcctccaggtgca	8	11	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	115120672	115120672	G	A	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.334	p.L112F	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	49	0	0	21	32	60.38	-	-	-	A	115120672	G	A	115120672	3	1	184	1	0	0	0	0	1	0	0	0	15754	1029	36	4	1929	4	TBX3	12	115120672	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	5934457	115120672	18731223	39	11333										
ESD	0	genome.wustl.edu	37	chr13	47354111	47354112	+	Frame_Shift_Ins	INS	-	-	T													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cccaaatatccactaaaggcINSttttttgccccagggacaga							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	13	47354111	47354112	-	T	INS	ESD	ENST00000378720	human	ensembl	69_37n	-1	known	frame_shift_ins	c.559_558	p.A186fs	1.000:1.000	pfam_Esterase_put,pfam_Peptidase_S9,tigrfam_S-formylglutathione_hydrol	pfam_Esterase_put,pfam_Peptidase_S9,pfam_AXE1,tigrfam_S-formylglutathione_hydrol	-	no_errors	ESD	HGNC	ENSG00000139684	214	0	0	246	131	34.75	-	-	-	T	47354112	-	T	47354111	7	5	184	1	0	1	1	0	0	0	0	0	5287	797	28	0	301	0	ESD	13	47354111	Frame_Shift_Ins	INS	-	TCGA-A8-A084-01A-21W-A019-09		47354111	67815767	40	11334										
KLHL1	0	genome.wustl.edu	37	chr13	70681654	70681654	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gctcacaccgcttctctcttGgcttttgagcaggcgactct	9	14	4	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	13	70681654	70681654	G	C	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.178	p.Q60E	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	60	0	0	22	22	50	-	-	-	C	70681654	G	C	70681654	3	2	184	1	0	0	0	0	1	0	0	0	8418	1357	47	4	2112	4	KLHL1	13	70681654	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	23327543	70681654	44488224	41	11335										
ATP11A	0	genome.wustl.edu	37	chr13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gaatgccctgctgcgctggcGcgtgttcatctactggacgc	13	13	2	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	13	113516786	113516786	G	A	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.2888	p.R963H	0.998	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	15	0	0	10	10	50	-	-	-	A	113516786	G	A	113516786	3	1	184	1	0	0	0	0	1	0	0	0	1123	1087	38	1	2986	1	ATP11A	13	113516786	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	42835132	113516786	1653092	42	11336										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256881	69256881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ggcacttgtccccgtacttaCaggcaccgttttcctcaaag	8	14	1	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	14	69256881	69256881	C	T	SNP	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	missense	c.386	p.C129Y	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	84	0	0	63	37	37	-	-	-	T	69256881	C	T	69256881	3	4	184	1	0	0	0	0	1	0	0	0	17742	478	17	4	634	4	ZFP36L1	14	69256881	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		69256881	38092659	43	11337										
CCDC33	0	genome.wustl.edu	37	chr15	74628287	74628287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gtgccctcacccactccatgGacctcaagcagccctcagag	8	18	3	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	15	74628287	74628287	G	A	SNP	CCDC33	ENST00000398814	human	ensembl	69_37n	1	known	missense	c.2161	p.D721N	0.091	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CCDC33	HGNC	ENSG00000140481	96	0	0	10	45	81.82	-	-	-	A	74628287	G	A	74628287	3	1	184	1	0	0	0	0	1	0	0	0	2832	1174	41	2	2498	2	CCDC33	15	74628287	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09		74628287	27903105	44	11338										
CLEC16A	0	genome.wustl.edu	37	chr16	11154764	11154764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gaactgttggtccaggccatCcgggtgttcttcatgctgcg	13	11	2	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	11154764	11154764	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	silent	c.2001	p.I667	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	210	0	0	105	91	46.19	-	-	-	T	11154764	C	T	11154764	2	4	184	1	0	0	0	0	0	0	0	1	3530	845	30	2		2	CLEC16A	16	11154764	Silent	SNP	C	TCGA-A8-A084-01A-21W-A019-09		11154764	79199989	45	11339										
DNAH3	0	genome.wustl.edu	37	chr16	21156695	21156695	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gtccatgacgtgcgttgcatCaagggcgggtaaaagctgtg	15	8	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	21156695	21156695	C	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.255	p.L85F	0.997	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	47	0	0	37	48	56.47	-	-	-	A	21156695	C	A	21156695	3	1	184	1	0	0	0	0	1	0	0	0	4639	825	29	2	12334	2	DNAH3	16	21156695	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	10001931	21156695	69198058	46	11340										
CLN3	0	genome.wustl.edu	37	chr16	28493476	28493476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gatgcgacagcagcggagagAagagcgggaggcaaagacgc	18	8	0	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	28493476	28493476	A	G	SNP	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	missense	c.1006	p.S336P	1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	18	0	0	10	13	56.52	-	-	-	G	28493476	A	G	28493476	3	3	184	1	0	0	0	0	1	0	0	0	3573	246	9	5	322	5	CLN3	16	28493476	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09	7336781	28493476	61861277	47	11341										
SALL1	0	genome.wustl.edu	37	chr16	51171179	51171179	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cccgtcagcccactaacaggTgagctgttcccactgccgag	10	16	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	51171179	51171179	T	A	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	silent	c.3819	p.S1273	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	43	0	0	30	30	50	-	-	-	A	51171179	T	A	51171179	2	1	184	1	0	0	0	0	0	0	0	1	13896	1683	59	5		5	SALL1	16	51171179	Silent	SNP	T	TCGA-A8-A084-01A-21W-A019-09	22677703	51171179	39183574	48	11342										
FXR2	0	genome.wustl.edu	37	chr17	7495184	7495184	+	Frame_Shift_Del	DEL	G	G	-													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	accatactacccaactccaaGggggcggagagctccccatt							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	17	7495184	7495184	G	-	DEL	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	frame_shift_del	c.1986	p.L663fs	0.977	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	37	0	0	18	2	10	-	-	-	-	7495184	G	-	7495184	7	5	184	1	0	1	0	1	0	0	0	0	6165	987	35	0		0	FXR2	17	7495184	Frame_Shift_Del	DEL	G	TCGA-A8-A084-01A-21W-A019-09		7495184	73700026	49	11343										
DSG3	0	genome.wustl.edu	37	chr18	29054365	29054365	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ttctggactcctacttttctCaggtaatttggtgaaaaact	7	8	2	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	18	29054365	29054365	C	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	nonsense	c.2383	p.Q795*	1.000	prints_Desmoglein	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	177	0	0	95	26	21.49	-	-	-	T	29054365	C	T	29054365	4	4	184	1	0	0	0	0	0	1	0	0	4813	827	29	2	2441	2	DSG3	18	29054365	Nonsense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		29054365	49022883	50	11344										
DOT1L	0	genome.wustl.edu	37	chr19	2185865	2185865	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gtgtttcagatgggtctgtgAagaaatcccggatctcaagc	12	8	3	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	2185865	2185865	A	G	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.137	p.E46G	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	414	0	0	162	107	39.78	-	-	-	G	2185865	A	G	2185865	3	3	184	1	0	0	0	0	1	0	0	0	4744	246	9	5	147	5	DOT1L	19	2185865	Missense_Mutation	SNP	A	TCGA-A8-A084-01A-21W-A019-09		2185865	56943118	51	11345										
ACSBG2	0	genome.wustl.edu	37	chr19	6147661	6147661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ccagtactatgaggcttgtcGgaaggctgcaaaatccttga	11	9	0	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	6147661	6147661	G	A	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.272	p.R91Q	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	351	1	0.28	268	174	39.37	-	-	-	A	6147661	G	A	6147661	3	1	184	1	0	0	0	0	1	0	0	0	174	1116	39	1	278	1	ACSBG2	19	6147661	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	3961796	6147661	52981322	52	11346										
FBN3	0	genome.wustl.edu	37	chr19	8161889	8161890	+	Frame_Shift_Ins	INS	-	-	G													0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tgctgccacactcatcgacaINStctgggaaaatacagcaaat							TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	8161889	8161890	-	G	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5289_5288	p.V1764fs	1.000:1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	81	0	0	78	39	33.33	-	-	-	G	8161890	-	G	8161889	7	5	184	1	0	1	1	0	0	0	0	0	5750	231	8	0	3228	0	FBN3	19	8161889	Frame_Shift_Ins	INS	-	TCGA-A8-A084-01A-21W-A019-09	2014228	8161889	50967094	53	11347										
ZNF99	0	genome.wustl.edu	37	chr19	22941252	22941252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ggaccacttaaaagctttacCacattcttcacatttgtagg	6	10	2	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	22941252	22941252	C	T	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1186	p.G396S	0.964	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	309	0	0	386	177	31.44	-	-	-	T	22941252	C	T	22941252	3	4	184	1	0	0	0	0	1	0	0	0	18297	594	21	4	1938	4	ZNF99	19	22941252	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	14779363	22941252	36187731	54	11348										
LIPE	0	genome.wustl.edu	37	chr19	42906899	42906899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gcgtcgggggtggaaaccctCggggaaggcggcacggacgc	20	11	0	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	42906899	42906899	C	T	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	missense	c.2827	p.E943K	0.000	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	21	0	0	13	4	23.53	-	-	-	T	42906899	C	T	42906899	3	4	184	1	0	0	0	0	1	0	0	0	8877	893	31	1	411	1	LIPE	19	42906899	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	19965647	42906899	16222084	55	11349										
KLK2	0	genome.wustl.edu	37	chr19	51379763	51379763	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	gctgggtcggcacaacctgtTtgagcctgaagacacaggcc	13	12	0	3			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	51379763	51379763	T	C	SNP	KLK2	ENST00000325321	human	ensembl	69_37n	1	known	missense	c.242	p.F81S	0.001	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK2	HGNC	ENSG00000167751	71	0	0	51	27	34.18	-	-	-	C	51379763	T	C	51379763	3	2	184	1	0	0	0	0	1	0	0	0	8457	1841	64	5	252	5	KLK2	19	51379763	Missense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09	8472864	51379763	7749220	56	11350										
LILRA5	0	genome.wustl.edu	37	chr19	54818710	54818710	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tcttctgttcaccttccagcTgcagcttgggggcttctctg	10	13	4	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	54818710	54818710	T	C	SNP	LILRA5	ENST00000301219	human	ensembl	69_37n	-1	known	silent	c.888	p.A296	0.002	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116	106	0	0	97	35	26.52	-	-	-	C	54818710	T	C	54818710	2	2	184	1	0	0	0	0	0	0	0	1	8843	1567	55	5		5	LILRA5	19	54818710	Silent	SNP	T	TCGA-A8-A084-01A-21W-A019-09	3438947	54818710	4310273	57	11351										
XRN2	0	genome.wustl.edu	37	chr20	21314348	21314348	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ctttttggttgtagtatttgGaaagagaactcacaatggcc	10	6	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	21314348	21314348	G	T	SNP	XRN2	ENST00000377191	human	ensembl	69_37n	1	known	nonsense	c.940	p.E314*	1.000	pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930	242	0	0	214	170	44.27	-	-	-	T	21314348	G	T	21314348	4	4	184	1	0	0	0	0	0	1	0	0	17557	1175	41	2	982	2	XRN2	20	21314348	Nonsense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09		21314348	41711172	58	11352										
SPO11	0	genome.wustl.edu	37	chr20	55908329	55908329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	caccaaaatcagctcaaaaaTtttgtaagttaattgttctt	4	7	3	0			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	55908329	55908329	T	C	SNP	SPO11	ENST00000371263	human	ensembl	69_37n	1	known	missense	c.331	p.F111L	0.995	pfam_Spo11/TopoVI_A_N,superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11	pfam_Meiosis_Spo11,pfam_Spo11/TopoVI_A_N,superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11,prints_Spo11/TopoVI_A,prints_TopoVI_A	-	no_errors	SPO11	HGNC	ENSG00000054796	83	0	0	62	53	46.09	-	-	-	C	55908329	T	C	55908329	3	2	184	1	0	0	0	0	1	0	0	0	15168	1493	52	5	341	5	SPO11	20	55908329	Missense_Mutation	SNP	T	TCGA-A8-A084-01A-21W-A019-09	34593981	55908329	7117191	59	11353										
MYT1	0	genome.wustl.edu	37	chr20	62871685	62871685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	ttctctaggagccaatatgcGaacagaatttcgatgcctat	8	9	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	62871685	62871685	G	A	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.3331	p.E1111K	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	11	0	0	5	6	54.55	-	-	-	A	62871685	G	A	62871685	3	1	184	1	0	0	0	0	1	0	0	0	10178	1059	37	1	3332	1	MYT1	20	62871685	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09	6963356	62871685	153835	60	11354										
TCF20	0	genome.wustl.edu	37	chr22	42607000	42607000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	tttgtcatccacgctgccacGccactcttctgaagaccttg	7	15	3	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	22	42607000	42607000	G	A	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.4312	p.R1438C	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	393	0	0	214	70	24.65	-	-	-	A	42607000	G	A	42607000	3	1	184	1	0	0	0	0	1	0	0	0	15785	1087	38	1	1608	1	TCF20	22	42607000	Missense_Mutation	SNP	G	TCGA-A8-A084-01A-21W-A019-09		42607000	8697566	61	11355										
SSX7	0	genome.wustl.edu	37	chrX	52677374	52677374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	agggcacaggtgtttcccatCgttctgtgagccagatgctt	12	10	1	2			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	X	52677374	52677374	C	T	SNP	SSX7	ENST00000298181	human	ensembl	69_37n	-1	known	missense	c.403	p.D135N	0.000	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754	487	0	0	781	92	10.54	-	-	-	T	52677374	C	T	52677374	3	4	184	1	0	0	0	0	1	0	0	0	15300	884	31	1	171	1	SSX7	23	52677374	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09		52677374	102593186	62	11356										
ZXDA	0	genome.wustl.edu	37	chrX	57935843	57935843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	12	0.0236043287873935	2.26708074534162	3.88642413487134	1.87620475476547	0.237743976309059	0.854829444228896	7	cacggtggtgaagctcttgcCacagccctccgcagggcagc	13	15	1	1			TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	X	57935843	57935843	C	A	SNP	ZXDA	ENST00000358697	human	ensembl	69_37n	-1	known	missense	c.1012	p.G338C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205	26	0	0	28	11	28.21	-	-	-	A	57935843	C	A	57935843	3	1	184	1	0	0	0	0	1	0	0	0	18341	594	21	4	1391	4	ZXDA	23	57935843	Missense_Mutation	SNP	C	TCGA-A8-A084-01A-21W-A019-09	5258469	57935843	97334717	63	11357										
PRAMEF2	0	genome.wustl.edu	37	chr1	12920065	12920065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tgttcctcaggctggaacacCtccagttgcttaaaataaaa	7	10	1	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	12920065	12920065	C	T	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.805	p.L269F	0.011	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	253	0	0	308	281	47.71	-	-	-	T	12920065	C	T	12920065	3	4	185	1	0	0	0	0	1	0	0	0	12513	681	24	4	811	4	PRAMEF2	1	12920065	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09		12920065	236330556	1	11358										
UBR4	0	genome.wustl.edu	37	chr1	19497282	19497282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tatttgccttgcacctgctaGagccaatagccaaaacagca	7	12	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	19497282	19497282	G	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.3617	p.S1206C	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	357	0	0	312	186	37.35	-	-	-	C	19497282	G	C	19497282	3	2	185	1	0	0	0	0	1	0	0	0	17001	942	33	2	12258	2	UBR4	1	19497282	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	6577217	19497282	229753339	2	11359										
PABPC4	0	genome.wustl.edu	37	chr1	40028055	40028055	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	catggaggcagtcagtggctCctgcccctgcacatggaccg	13	14	1	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	40028055	40028055	C	G	SNP	PABPC4	ENST00000372858	human	ensembl	69_37n	-1	known	missense	c.1702	p.E568Q	1.000	superfamily_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	43	0	0	21	9	30	-	-	-	G	40028055	C	G	40028055	3	3	185	1	0	0	0	0	1	0	0	0	11439	864	30	2	292	2	PABPC4	1	40028055	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	20530773	40028055	209222566	3	11360										
PTPRF	0	genome.wustl.edu	37	chr1	44085063	44085063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tggccacgtgacctgcatgcGatcacagaggaactacatgg	12	11	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	44085063	44085063	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.4751	p.R1584Q	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	42	0	0	18	10	35.71	-	-	-	A	44085063	G	A	44085063	3	1	185	1	0	0	0	0	1	0	0	0	12884	1058	37	1	4853	1	PTPRF	1	44085063	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	4057008	44085063	205165558	4	11361										
USP33	0	genome.wustl.edu	37	chr1	78187538	78187538	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tttagttcatctctggcaaaGaaggcagcaagacaatcttg	9	8	3	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	78187538	78187538	G	C	SNP	USP33	ENST00000357428	human	ensembl	69_37n	-1	known	missense	c.1728	p.F576L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP33	HGNC	ENSG00000077254	81	0	0	160	19	10.61	-	-	-	C	78187538	G	C	78187538	3	2	185	1	0	0	0	0	1	0	0	0	17161	933	33	2	1156	2	USP33	1	78187538	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	34102475	78187538	171063083	5	11362										
PTPN22	0	genome.wustl.edu	37	chr1	114372636	114372636	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gaggaggtgggggagaagaaCgatcttgatgtagttctgtg	18	3	2	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	114372636	114372636	C	A	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.2069	p.R690L	0.574	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	93	0	0	97	64	39.75	-	-	-	A	114372636	C	A	114372636	3	1	185	1	0	0	0	0	1	0	0	0	12870	536	19	3	374	3	PTPN22	1	114372636	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	36185098	114372636	134877985	6	11363										
ARHGEF11	0	genome.wustl.edu	37	chr1	156910022	156910022	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cttccagagcggagtcagcgAgcccttccatgaacagaggg	13	12	1	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	156910022	156910022	A	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.3710	p.L1237H	0.841	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	67	0	0	17	14	45.16	-	-	-	T	156910022	A	T	156910022	3	4	185	1	0	0	0	0	1	0	0	0	898	304	11	5	1002	5	ARHGEF11	1	156910022	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	42537386	156910022	92340599	7	11364										
OR6N1	0	genome.wustl.edu	37	chr1	158735696	158735696	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tagctcttcttcagctgcacAtacatggaaaggatgctccc	8	12	3	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	158735696	158735696	A	T	SNP	OR6N1	ENST00000335094	human	ensembl	69_37n	-1	known	nonsense	c.777	p.Y259*	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6N1	HGNC	ENSG00000197403	386	0	0	367	213	36.72	-	-	-	T	158735696	A	T	158735696	4	4	185	1	0	0	0	0	0	1	0	0	11279	224	8	5	164	5	OR6N1	1	158735696	Nonsense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	1825674	158735696	90514925	8	11365										
USH2A	0	genome.wustl.edu	37	chr1	215916652	215916652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ttgagtaagacattgtactcCacaggaatttcggggatgag	12	6	0	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	215916652	215916652	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.11415	p.V3805	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	92	0	0	95	92	49.2	-	-	-	T	215916652	C	T	215916652	2	4	185	1	0	0	0	0	0	0	0	1	17133	581	21	4		4	USH2A	1	215916652	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09	57180956	215916652	33333969	9	11366										
TAF5L	0	genome.wustl.edu	37	chr1	229750159	229750159	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gcttcaggggaccatctgagTccacgtactgccggcgtttg	13	12	2	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	229750159	229750159	T	G	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	missense	c.71	p.D24A	1.000	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	76	0	0	146	48	24.62	-	-	-	G	229750159	T	G	229750159	3	3	185	1	0	0	0	0	1	0	0	0	15621	1667	58	5	1720	5	TAF5L	1	229750159	Missense_Mutation	SNP	T	TCGA-A8-A085-01A-11W-A019-09	13833507	229750159	19500462	10	11367										
HEATR1	0	genome.wustl.edu	37	chr1	236749563	236749563	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tcttcccagcctcttaatagAgggtgcagggagcagattcc	11	11	2	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	236749563	236749563	A	C	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	silent	c.1905	p.P635	0.553	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	99	0	0	155	51	24.64	-	-	-	C	236749563	A	C	236749563	2	2	185	1	0	0	0	0	0	0	0	1	7078	291	11	5		5	HEATR1	1	236749563	Silent	SNP	A	TCGA-A8-A085-01A-11W-A019-09	6999404	236749563	12501058	11	11368										
EML4	0	genome.wustl.edu	37	chr2	42557268	42557268	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tggtgagcctctttatgaagAgccatgcaacgagataagca	11	8	1	4			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	42557268	42557268	A	T	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	missense	c.2867	p.E956V	0.997	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	107	0	0	68	40	37.04	-	-	-	T	42557268	A	T	42557268	3	4	185	1	0	0	0	0	1	0	0	0	5136	304	11	5	2957	5	EML4	2	42557268	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09		42557268	200642105	12	11369										
ARID5A	0	genome.wustl.edu	37	chr2	97217854	97217854	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	actccccttcagccccctggTcatcccggccttcccggccc	7	23	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	97217854	97217854	T	A	SNP	ARID5A	ENST00000357485	human	ensembl	69_37n	1	known	missense	c.1589	p.V530D	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5A	HGNC	ENSG00000196843	36	0	0	3	9	75	-	-	-	A	97217854	T	A	97217854	3	1	185	1	0	0	0	0	1	0	0	0	923	1667	58	5	1615	5	ARID5A	2	97217854	Missense_Mutation	SNP	T	TCGA-A8-A085-01A-11W-A019-09	54660586	97217854	145981519	13	11370										
EIF5B	0	genome.wustl.edu	37	chr2	99999274	99999274	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	atagaggaagctctctttgtGacattgccattttagttgtt	9	6	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	99999274	99999274	G	C	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	missense	c.2161	p.D721H	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	102	0	0	72	49	40.5	-	-	-	C	99999274	G	C	99999274	3	2	185	1	0	0	0	0	1	0	0	0	5081	1290	45	2	2215	2	EIF5B	2	99999274	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	2781420	99999274	143200099	14	11371										
HS6ST1	0	genome.wustl.edu	37	chr2	129026227	129026227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ggccagcatgcgcacctggcGgttgttggccaggttgtacg	16	11	0	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	129026227	129026227	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.745	p.R249S	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	11	0	0	0	3	100	-	-	-	T	129026227	G	T	129026227	3	4	185	1	0	0	0	0	1	0	0	0	7421	1116	39	3	494	3	HS6ST1	2	129026227	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	29026953	129026227	114173146	15	11372										
FAM171B	0	genome.wustl.edu	37	chr2	187616031	187616031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ggacatttgatatgaacacaGgtatgtgagctaggttaaaa	11	4	0	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	187616031	187616031	G	A	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.895	p.G299S	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	114	0	0	74	53	41.73	-	-	-	A	187616031	G	A	187616031	3	1	185	1	0	0	0	0	1	0	0	0	5531	1014	35	4	913	4	FAM171B	2	187616031	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	58589804	187616031	55583342	16	11373										
FN1	0	genome.wustl.edu	37	chr2	216264037	216264037	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	acaatggtggtctcagtcacCtcggtgttgtaaggtggaat	13	7	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	216264037	216264037	C	G	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.3291	p.E1097D	1.000	pfam_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	100	0	0	99	49	33.11	-	-	-	G	216264037	C	G	216264037	3	3	185	1	0	0	0	0	1	0	0	0	6008	680	24	4	4246	4	FN1	2	216264037	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	28648006	216264037	26935336	17	11374										
TNS1	0	genome.wustl.edu	37	chr2	218669195	218669195	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gcagggttcatctcttttggCcggcattcagcatgaccttg	11	11	3	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	218669195	218669195	C	A	SNP	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	missense	c.5195	p.G1732V	1.000	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	75	0	0	85	43	33.59	-	-	-	A	218669195	C	A	218669195	3	1	185	1	0	0	0	0	1	0	0	0	16438	739	26	4	16	4	TNS1	2	218669195	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	2405158	218669195	24530178	18	11375										
COL4A4	0	genome.wustl.edu	37	chr2	227872737	227872737	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	aagggcacgggactcaccatCaggaatgaatacccgatcca	10	12	2	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	227872737	227872737	C	T	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	silent	c.4806	p.L1602	0.966	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	27	0	0	17	11	39.29	-	-	-	T	227872737	C	T	227872737	2	4	185	1	0	0	0	0	0	0	0	1	3723	813	29	2		2	COL4A4	2	227872737	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09	9203542	227872737	15326636	19	11376										
ZNF385D	0	genome.wustl.edu	37	chr3	21462907	21462907	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	agaattcgtggagccaatggCtttgaaggttcttttgaaaa	11	5	1	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	21462907	21462907	C	T	SNP	ZNF385D	ENST00000281523	human	ensembl	69_37n	-1	known	silent	c.987	p.K329	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789	27	0	0	26	19	42.22	-	-	-	T	21462907	C	T	21462907	2	4	185	1	0	0	0	0	0	0	0	1	17974	796	28	4		4	ZNF385D	3	21462907	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09		21462907	176559523	20	11377										
NAT6	0	genome.wustl.edu	37	chr3	50334919	50334919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tgtgtagggtctagtgtaggGgtcagcttggctgggccagg	19	6	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	50334919	50334919	G	A	SNP	NAT6	ENST00000354862	human	ensembl	69_37n	-1	known	silent	c.42	p.T14	0.005	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT6	HGNC	ENSG00000243477	30	0	0	8	8	50	-	-	-	A	50334919	G	A	50334919	2	1	185	1	0	0	0	0	0	0	0	1	10250	1219	43	4		4	NAT6	3	50334919	Silent	SNP	G	TCGA-A8-A085-01A-11W-A019-09	28872012	50334919	147687511	21	11378										
KALRN	0	genome.wustl.edu	37	chr3	124223779	124223779	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tggattagctggagacagtcCaaggcaaacaaggctcaagt	12	8	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	124223779	124223779	C	A	SNP	KALRN	ENST00000393496	human	ensembl	69_37n	1	novel	silent	c.30	p.S10	0.679	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	50	0	0	87	24	21.62	-	-	-	A	124223779	C	A	124223779	2	1	185	1	0	0	0	0	0	0	0	1	8029	609	21	4		4	KALRN	3	124223779	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09	73888860	124223779	73798651	22	11379										
GBA3	0	genome.wustl.edu	37	chr4	22820484	22820484	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cagctagaccccgagtccctTacacatcggccaaggaataa	8	14	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	4	22820484	22820484	T	A	SNP	GBA3	ENST00000508166	human	ensembl	69_37n	1	known	missense	c.1348	p.Y450N	1.000	NULL	NULL	-	pseudogene	GBA3	HGNC	ENSG00000249948	96	0	0	38	21	35.59	-	-	-	A	22820484	T	A	22820484	3	1	185	1	0	0	0	0	1	0	0	0	6318	1754	61	5	1366	5	GBA3	4	22820484	Missense_Mutation	SNP	T	TCGA-A8-A085-01A-11W-A019-09		22820484	168333792	23	11380										
TET2	0	genome.wustl.edu	37	chr4	106155363	106155363	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	agtagagggtattccaagtgTttgcaaaatggaggaataaa	12	3	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	4	106155363	106155363	T	C	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	silent	c.264	p.C88	0.017	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	292	0	0	292	187	39.04	-	-	-	C	106155363	T	C	106155363	2	2	185	1	0	0	0	0	0	0	0	1	15865	1731	60	5		5	TET2	4	106155363	Silent	SNP	T	TCGA-A8-A085-01A-11W-A019-09	83334879	106155363	84998913	24	11381										
TARS	0	genome.wustl.edu	37	chr5	33455166	33455166	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tattatgacatgtacctcgaAgaagggtaagccatcaacta	8	8	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	33455166	33455166	A	C	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.570	p.E190D	0.620	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	56	0	0	61	37	37.76	-	-	-	C	33455166	A	C	33455166	3	2	185	1	0	0	0	0	1	0	0	0	15651	69	3	5	588	5	TARS	5	33455166	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09		33455166	147460094	25	11382										
TNPO1	0	genome.wustl.edu	37	chr5	72196887	72196887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	catgatcagtgtgaatcccaGtggcgtaatccaagtaagat	10	8	1	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	72196887	72196887	G	C	SNP	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	missense	c.2501	p.S834T	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	65	0	0	77	37	32.46	-	-	-	C	72196887	G	C	72196887	3	2	185	1	0	0	0	0	1	0	0	0	16430	1029	36	4	2587	4	TNPO1	5	72196887	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	38741721	72196887	108718373	26	11383										
KIF4B	0	genome.wustl.edu	37	chr5	154393807	154393807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tcaaagaaattgataaaaagAgtgactttgaatttactctg	7	4	2	5			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	154393807	154393807	A	G	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.388	p.S130G	0.908	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	177	0	0	94	59	38.56	-	-	-	G	154393807	A	G	154393807	3	3	185	1	0	0	0	0	1	0	0	0	8356	304	11	5	390	5	KIF4B	5	154393807	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	82196920	154393807	26521453	27	11384										
HMMR	0	genome.wustl.edu	37	chr5	162905690	162905690	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	caattatttctttttcttagGaaggaggctgaactggagaa	10	5	2	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	162905690	162905690	G	T	SNP	HMMR	ENST00000393915	human	ensembl	69_37n	1	known	silent	c.1269	p.G423	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571	298	0	0	292	80	21.51	-	-	-	T	162905690	G	T	162905690	2	4	185	1	0	0	0	0	0	0	0	1	7293	1188	41	2		2	HMMR	5	162905690	Silent	SNP	G	TCGA-A8-A085-01A-11W-A019-09	8511883	162905690	18009570	28	11385										
FGFR4	0	genome.wustl.edu	37	chr5	176520707	176520707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gctttggccaggtagtacgtGcagaggcctttggcatggac	15	9	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	176520707	176520707	G	A	SNP	FGFR4	ENST00000292408	human	ensembl	69_37n	1	known	missense	c.1450	p.A484T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR4	HGNC	ENSG00000160867	72	0	0	21	22	51.16	-	-	-	A	176520707	G	A	176520707	3	1	185	1	0	0	0	0	1	0	0	0	5914	1319	46	4	1558	4	FGFR4	5	176520707	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	13615017	176520707	4394553	29	11386										
ELOVL5	0	genome.wustl.edu	37	chr6	53134010	53134010	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cattcacagcagccatggacCcattctggtggtccttcagg	10	13	3	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	53134010	53134010	C	G	SNP	ELOVL5	ENST00000541407	human	ensembl	69_37n	-1	known	missense	c.896	p.G299A	0.999	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660	103	0	0	108	52	32.5	-	-	-	G	53134010	C	G	53134010	3	3	185	1	0	0	0	0	1	0	0	0	5114	623	22	4	88	4	ELOVL5	6	53134010	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09		53134010	117981057	30	11387										
KCNQ5	0	genome.wustl.edu	37	chr6	73879506	73879506	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	actgatgatgtatatgatgaAaaaggatgccagtgtgatgt	12	3	0	5			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	73879506	73879506	A	C	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.1536	p.E512D	0.980	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	120	0	0	107	33	23.57	-	-	-	C	73879506	A	C	73879506	3	2	185	1	0	0	0	0	1	0	0	0	8140	11	1	5	1609	5	KCNQ5	6	73879506	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	20745496	73879506	97235561	31	11388										
CCNC	0	genome.wustl.edu	37	chr6	99993065	99993065	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ctctcatcgaaattcttccaCtgctcatatagttttaaaat	3	10	3	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	99993065	99993065	C	G	SNP	CCNC	ENST00000520429	human	ensembl	69_37n	-1	known	missense	c.720	p.Q240H	1.000	superfamily_Cyclin-like,pirsf_Cyclin_C/H	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_C/H	-	no_errors	CCNC	HGNC	ENSG00000112237	114	0	0	33	46	57.5	-	-	-	G	99993065	C	G	99993065	3	3	185	1	0	0	0	0	1	0	0	0	2944	564	20	4	139	4	CCNC	6	99993065	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	26113559	99993065	71122002	32	11389										
CDK14	0	genome.wustl.edu	37	chr7	90377007	90377007	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	catttttagccaacaagtccCaaatttggaaaagctgactc	6	10	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	7	90377007	90377007	C	T	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	silent	c.381	p.P127	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	344	0	0	142	100	41.15	-	-	-	T	90377007	C	T	90377007	2	4	185	1	0	0	0	0	0	0	0	1	3159	581	21	4		4	CDK14	7	90377007	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09		90377007	68761656	33	11390										
PKHD1L1	0	genome.wustl.edu	37	chr8	110503282	110503282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	caattggtgtatttgggacaGatggattggacatagatgac	13	4	0	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	8	110503282	110503282	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.10066	p.D3356H	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	152	0	0	172	30	14.85	-	-	-	C	110503282	G	C	110503282	3	2	185	1	0	0	0	0	1	0	0	0	12046	942	33	2	10308	2	PKHD1L1	8	110503282	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09		110503282	35860740	34	11391										
FREM1	0	genome.wustl.edu	37	chr9	14801748	14801748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	agaagtctttgctaaaccccCtatcgatgaggaggccatgg	11	10	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	14801748	14801748	C	T	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.3599	p.R1200K	0.001	superfamily_Cadherin-like	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	207	0	0	114	67	36.81	-	-	-	T	14801748	C	T	14801748	3	4	185	1	0	0	0	0	1	0	0	0	6093	681	24	4	3065	4	FREM1	9	14801748	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09		14801748	126411683	35	11392										
PIGO	0	genome.wustl.edu	37	chr9	35091692	35091693	+	Frame_Shift_Ins	INS	-	-	G													0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	agagaccaggacccggagacINSgggggggagcctcatctgcc							TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	35091692	35091693	-	G	INS	PIGO	ENST00000341666	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2192_2191	p.R731fs	0.530:0.180	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282	33	0	0	22	4	15.38	-	-	-	G	35091693	-	G	35091692	7	5	185	1	0	1	1	0	0	0	0	0	11968	536	19	0	1097	0	PIGO	9	35091692	Frame_Shift_Ins	INS	-	TCGA-A8-A085-01A-11W-A019-09	20289944	35091692	106121739	36	11393										
PRUNE2	0	genome.wustl.edu	37	chr9	79324701	79324701	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ccatggcccactcattcgggTccctaacagaaggtgtcttg	10	13	2	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	79324701	79324701	T	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1412	p.D471V	0.957	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	81	0	0	58	54	48.21	-	-	-	A	79324701	T	A	79324701	3	1	185	1	0	0	0	0	1	0	0	0	12721	1667	58	5	6825	5	PRUNE2	9	79324701	Missense_Mutation	SNP	T	TCGA-A8-A085-01A-11W-A019-09	44233009	79324701	61888730	37	11394										
OR13C2	0	genome.wustl.edu	37	chr9	107367295	107367295	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	acaaaggtgtcaatatgaacAatgttgtggccacaagcatg	10	7	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	107367295	107367295	A	C	SNP	OR13C2	ENST00000542196	human	ensembl	69_37n	-1	known	missense	c.614	p.L205W	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019	479	0	0	476	65	12.01	-	-	-	C	107367295	A	C	107367295	3	2	185	1	0	0	0	0	1	0	0	0	11007	131	5	5	345	5	OR13C2	9	107367295	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	28042594	107367295	33846136	38	11395										
C10orf82	0	genome.wustl.edu	37	chr10	118424328	118424328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tccgtgatctccaggaagtcCttgtagcagtttttggccat	10	10	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	10	118424328	118424328	C	T	SNP	C10orf82	ENST00000588184	human	ensembl	69_37n	-1	known	silent	c.405	p.K135	0.652	NULL	NULL	-	no_errors	C10orf82	HGNC	ENSG00000165863	100	0	0	50	45	47.37	-	-	-	T	118424328	C	T	118424328	2	4	185	1	0	0	0	0	0	0	0	1	1630	680	24	4		4	C10orf82	10	118424328	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09		118424328	17110419	39	11396										
TRPM5	0	genome.wustl.edu	37	chr11	2433403	2433403	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	atgaacaggaagatggccacCatgtcacacttgttccagtt	9	10	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	2433403	2433403	C	G	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2442	p.M814I	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	19	0	0	3	5	55.56	-	-	-	G	2433403	C	G	2433403	3	3	185	1	0	0	0	0	1	0	0	0	16685	594	21	4	1097	4	TRPM5	11	2433403	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09		2433403	132573113	40	11397										
MADD	0	genome.wustl.edu	37	chr11	47336775	47336775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	atctctctttcatcagaatgGacgcgatctctctatctggt	7	11	7	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	47336775	47336775	G	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.4274	p.G1425V	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	92	0	0	88	56	38.89	-	-	-	T	47336775	G	T	47336775	3	4	185	1	0	0	0	0	1	0	0	0	9219	1174	41	2	4388	2	MADD	11	47336775	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	44903372	47336775	87669741	41	11398										
SPTBN2	0	genome.wustl.edu	37	chr11	66455032	66455032	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gctgactcggtagacctgctCtggggcattgcagatggggc	16	10	1	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	66455032	66455032	C	G	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.6588	p.Q2196H	1.000	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	27	0	0	12	25	67.57	-	-	-	G	66455032	C	G	66455032	3	3	185	1	0	0	0	0	1	0	0	0	15211	912	32	2	600	2	SPTBN2	11	66455032	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	19118257	66455032	68551484	42	11399										
MAP6	0	genome.wustl.edu	37	chr11	75298782	75298782	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tgatccttgacagatgctgaGaccatgggaccttcatcctt	9	11	1	4			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	75298782	75298782	G	C	SNP	MAP6	ENST00000304771	human	ensembl	69_37n	-1	known	silent	c.1764	p.V588	0.000	NULL	pfam_STOP/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533	259	0	0	124	82	39.81	-	-	-	C	75298782	G	C	75298782	2	2	185	1	0	0	0	0	0	0	0	1	9335	929	33	2		2	MAP6	11	75298782	Silent	SNP	G	TCGA-A8-A085-01A-11W-A019-09	8843750	75298782	59707734	43	11400										
PANX3	0	genome.wustl.edu	37	chr11	124489690	124489690	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ctcatctcttttagctggctGagtgtcttatgtgtgttgaa	10	7	3	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	124489690	124489690	G	A	SNP	PANX3	ENST00000284288	human	ensembl	69_37n	1	known	silent	c.1038	p.L346	1.000	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143	182	0	0	39	100	71.94	-	-	-	A	124489690	G	A	124489690	2	1	185	1	0	0	0	0	0	0	0	1	11495	1277	45	2		2	PANX3	11	124489690	Silent	SNP	G	TCGA-A8-A085-01A-11W-A019-09	49190908	124489690	10516826	44	11401										
DDX11	0	genome.wustl.edu	37	chr12	31242378	31242381	+	Frame_Shift_Del	DEL	GCAG	GCAG	-													0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	gtgaaaagcctaggttctgtGcagcttatcaacgaccgctg							TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	GCAG	GCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	31242378	31242381	GCAG	-	DEL	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	frame_shift_del	c.834_837	p.Q279fs	1.000:1.000:1.000:0.979	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	30	0	0	16	5	23.81	-	-	-	-	31242381	GCAG	-	31242378	7	5	185	1	0	1	0	1	0	0	0	0	4374	1306	46	0	860	0	DDX11	12	31242378	Frame_Shift_Del	DEL	GCAG	TCGA-A8-A085-01A-11W-A019-09		31242378	102609517	45	11402										
SCYL2	0	genome.wustl.edu	37	chr12	100720449	100720449	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	aaagattttggaatacttggAtaagtggtttgtacttgatg	11	2	0	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	100720449	100720449	A	G	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.1559	p.D520G	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	60	0	0	72	33	31.43	-	-	-	G	100720449	A	G	100720449	3	3	185	1	0	0	0	0	1	0	0	0	14036	333	12	5	1601	5	SCYL2	12	100720449	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	69478071	100720449	33131446	46	11403										
GAS2L3	0	genome.wustl.edu	37	chr12	101017635	101017635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	aaaacagggacgtccaccagGtgcattggtgccagcatctt	11	11	1	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	101017635	101017635	G	C	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	missense	c.1052	p.G351A	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	225	0	0	212	143	40.28	-	-	-	C	101017635	G	C	101017635	3	2	185	1	0	0	0	0	1	0	0	0	6298	1261	44	4	1082	4	GAS2L3	12	101017635	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	297186	101017635	32834260	47	11404										
MYCBP2	0	genome.wustl.edu	37	chr13	77862348	77862348	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cctcttcttcatcactatctGattctccactctgcacagag	4	15	7	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	13	77862348	77862348	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	nonsense	c.542	p.S181*	1.000	NULL	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	205	0	0	60	118	65.92	-	-	-	C	77862348	G	C	77862348	4	2	185	1	0	0	0	0	0	1	0	0	10090	1294	45	2	13818	2	MYCBP2	13	77862348	Nonsense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09		77862348	37307530	48	11405										
TEP1	0	genome.wustl.edu	37	chr14	20872808	20872808	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ctggatccagtcagaaggcaGctggacaatggcacagaaat	12	9	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	20872808	20872808	G	C	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.994	p.L332V	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	75	0	0	62	34	35.42	-	-	-	C	20872808	G	C	20872808	3	2	185	1	0	0	0	0	1	0	0	0	15854	962	34	4	7093	4	TEP1	14	20872808	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09		20872808	86476732	49	11406										
MYH7	0	genome.wustl.edu	37	chr14	23884326	23884326	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cacccgcgcttccagcttctGcagctgcttcttgccgccct	8	19	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	23884326	23884326	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	nonsense	c.5437	p.Q1813*	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	83	0	0	42	39	47.56	-	-	-	A	23884326	G	A	23884326	4	1	185	1	0	0	0	0	0	1	0	0	10111	1328	46	4	386	4	MYH7	14	23884326	Nonsense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	3011518	23884326	83465214	50	11407										
C14orf177	0	genome.wustl.edu	37	chr14	99182541	99182541	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	acgactggatgcatcggaaaGagcctggggcaaggctggag	17	8	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	99182541	99182541	G	C	SNP	C14orf177	ENST00000325812	human	ensembl	69_37n	1	known	missense	c.13	p.E5Q	0.001	NULL	NULL	-	no_errors	C14orf177	HGNC	ENSG00000176605	34	0	0	26	16	38.1	-	-	-	C	99182541	G	C	99182541	3	2	185	1	0	0	0	0	1	0	0	0	1772	943	33	2	15	2	C14orf177	14	99182541	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	75298215	99182541	8166999	51	11408										
RYR3	0	genome.wustl.edu	37	chr15	33936689	33936689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	caagcgcctcccgacgtttgTcaacgtgccaaaggatcatc	9	14	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	33936689	33936689	T	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.3734	p.V1245A	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	33	0	0	38	27	41.54	-	-	-	C	33936689	T	C	33936689	3	2	185	1	0	0	0	0	1	0	0	0	13856	1667	58	5	3844	5	RYR3	15	33936689	Missense_Mutation	SNP	T	TCGA-A8-A085-01A-11W-A019-09		33936689	68594703	52	11409										
MAP1A	0	genome.wustl.edu	37	chr15	43814046	43814046	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	agttacagcgactgggtgaaGaaccttatctctcctgagct	10	10	1	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	43814046	43814046	G	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.375	p.K125N	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	39	0	0	39	14	26.42	-	-	-	C	43814046	G	C	43814046	3	2	185	1	0	0	0	0	1	0	0	0	9298	933	33	2	377	2	MAP1A	15	43814046	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	9877357	43814046	58717346	53	11410										
MYO1E	0	genome.wustl.edu	37	chr15	59470680	59470680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	actgcagcaggtgcaggacgCcttgcttctcctctccctgc	10	16	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	59470680	59470680	C	A	SNP	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	missense	c.1961	p.G654V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	17	0	0	32	16	33.33	-	-	-	A	59470680	C	A	59470680	3	1	185	1	0	0	0	0	1	0	0	0	10144	739	26	4	1405	4	MYO1E	15	59470680	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	15656634	59470680	43060712	54	11411										
MMP25	0	genome.wustl.edu	37	chr16	3107152	3107152	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ttctaccagggtccggtgggCgaccctgacaagtaccgcct	12	14	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	16	3107152	3107152	C	A	SNP	MMP25	ENST00000336577	human	ensembl	69_37n	1	known	silent	c.780	p.G260	0.448	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	121	0	0	138	53	27.75	-	-	-	A	3107152	C	A	3107152	2	1	185	1	0	0	0	0	0	0	0	1	9734	755	27	3		3	MMP25	16	3107152	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09		3107152	87247601	55	11412										
USP7	0	genome.wustl.edu	37	chr16	8988986	8988986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ctcattctctttgtctatgtCcacctggtccaaagggattt	7	11	3	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	16	8988986	8988986	C	G	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	missense	c.2941	p.D981H	1.000	NULL	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	162	0	0	203	73	26.35	-	-	-	G	8988986	C	G	8988986	3	3	185	1	0	0	0	0	1	0	0	0	17185	855	30	2	383	2	USP7	16	8988986	Missense_Mutation	SNP	C	TCGA-A8-A085-01A-11W-A019-09	5881834	8988986	81365767	56	11413										
KSR1	0	genome.wustl.edu	37	chr17	25909747	25909747	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tggctcagggccttccacggAcaccctctcagcagccagcc	10	18	2	0			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	17	25909747	25909747	A	G	SNP	KSR1	ENST00000319524	human	ensembl	69_37n	1	known	missense	c.596	p.D199G	0.802	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068	32	0	0	17	10	37.04	-	-	-	G	25909747	A	G	25909747	3	3	185	1	0	0	0	0	1	0	0	0	8635	275	10	5	191	5	KSR1	17	25909747	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09		25909747	55285463	57	11414										
LIG3	0	genome.wustl.edu	37	chr17	33323606	33323606	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	cttacagaaagcagccttccAggatgctaatgtctgcctgt	9	11	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	17	33323606	33323606	A	G	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.1757	p.Q586R	0.995	pfam_DNA_ligase_ATP-dep_cent,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	118	0	0	102	71	40.8	-	-	-	G	33323606	A	G	33323606	3	3	185	1	0	0	0	0	1	0	0	0	8837	188	7	5	1795	5	LIG3	17	33323606	Missense_Mutation	SNP	A	TCGA-A8-A085-01A-11W-A019-09	7413859	33323606	47871604	58	11415										
CHERP	0	genome.wustl.edu	37	chr19	16652820	16652820	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ccattgcgagccacgaactgGgcgagcttgtcgatgacatt	12	11	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	16652820	16652820	G	A	SNP	CHERP	ENST00000546361	human	ensembl	69_37n	-1	known	silent	c.60	p.A20	0.999	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	20	0	0	20	11	35.48	-	-	-	A	16652820	G	A	16652820	2	1	185	1	0	0	0	0	0	0	0	1	3365	1219	43	4		4	CHERP	19	16652820	Silent	SNP	G	TCGA-A8-A085-01A-11W-A019-09		16652820	42476163	59	11416										
CPAMD8	0	genome.wustl.edu	37	chr19	17014626	17014626	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	atgcctccagcataggacaaGatggcatattcagccaaggc	10	11	1	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	17014626	17014626	G	T	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.4466	p.S1489Y	1.000	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	52	0	0	133	25	15.82	-	-	-	T	17014626	G	T	17014626	3	4	185	1	0	0	0	0	1	0	0	0	3825	932	33	2	1404	2	CPAMD8	19	17014626	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	361806	17014626	42114357	60	11417										
MAMSTR	0	genome.wustl.edu	37	chr19	49218105	49218106	+	Frame_Shift_Ins	INS	-	-	G													0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tctgaagttccaacttgtgtINSggggggggcgaggggctagg							TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	49218105	49218106	-	G	INS	MAMSTR	ENST00000318083	human	ensembl	69_37n	-1	known	frame_shift_ins	c.486_485	p.H163fs	0.043:0.036	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	MAMSTR	HGNC	ENSG00000176909	30	0	0	30	4	11.76	-	-	-	G	49218106	-	G	49218105	7	5	185	1	0	1	1	0	0	0	0	0	9280	1683	59	0	781	0	MAMSTR	19	49218105	Frame_Shift_Ins	INS	-	TCGA-A8-A085-01A-11W-A019-09	32203479	49218105	9910878	61	11418										
KIAA1755	0	genome.wustl.edu	37	chr20	36869429	36869429	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ttcatgtaggagccttggggCggcctttctgagttgtgggt	16	7	2	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	20	36869429	36869429	C	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.1104	p.P368	0.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	335	0	0	268	165	38.02	-	-	-	A	36869429	C	A	36869429	2	1	185	1	0	0	0	0	0	0	0	1	8309	755	27	3		3	KIAA1755	20	36869429	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09		36869429	26156091	62	11419										
SALL4	0	genome.wustl.edu	37	chr20	50407393	50407393	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ttcagggtctctgaccctggCtcaggggtcccactcccttg	11	15	3	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	20	50407393	50407393	C	T	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	silent	c.1629	p.E543	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	67	0	0	62	39	38.61	-	-	-	T	50407393	C	T	50407393	2	4	185	1	0	0	0	0	0	0	0	1	13899	796	28	4		4	SALL4	20	50407393	Silent	SNP	C	TCGA-A8-A085-01A-11W-A019-09	13537964	50407393	12618127	63	11420										
TRAPPC10	0	genome.wustl.edu	37	chr21	45483643	45483643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tagagctgctgcacaactgcGtgcaggaactgaagctctta	11	10	1	2			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	21	45483643	45483643	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.1015	p.V339M	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	98	0	0	60	63	51.22	-	-	-	A	45483643	G	A	45483643	3	1	185	1	0	0	0	0	1	0	0	0	16553	1145	40	1	1041	1	TRAPPC10	21	45483643	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09		45483643	2646252	64	11421										
DGCR14	0	genome.wustl.edu	37	chr22	19125811	19125811	+	Frame_Shift_Del	DEL	C	C	-													0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tcagctccttgccatcggggCccaccttgccctgtttgtgc							TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	22	19125811	19125811	C	-	DEL	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	frame_shift_del	c.842	p.G281fs	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	9	0	0	4	2	33.33	-	-	-	-	19125811	C	-	19125811	7	5	185	1	0	1	0	1	0	0	0	0	4496	739	26	0	604	0	DGCR14	22	19125811	Frame_Shift_Del	DEL	C	TCGA-A8-A085-01A-11W-A019-09		19125811	32178755	65	11422										
BCORL1	0	genome.wustl.edu	37	chrX	129148840	129148840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	ccgagatcgtgaggaatgggGacccgagcacctgggtgaag	17	9	0	3			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	X	129148840	129148840	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.2092	p.D698Y	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	44	0	0	29	17	36.96	-	-	-	T	129148840	G	T	129148840	3	4	185	1	0	0	0	0	1	0	0	0	1391	1174	41	2	2102	2	BCORL1	23	129148840	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09		129148840	26121720	66	11423										
TKTL1	0	genome.wustl.edu	37	chrX	153524215	153524215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.164179104477612	11	0.0317716493755643	2.26818469323213	3.50537634408602	0.876344086021505	0.0122781377997423	0.16010691690864	6	tccaaaggggttggactaatGgcggatgctgaggcgagggc	18	7	0	1			TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	X	153524215	153524215	G	T	SNP	TKTL1	ENST00000369915	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.295	NULL	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	32	0	0	35	28	44.44	-	-	-	T	153524215	G	T	153524215	3	4	185	1	0	0	0	0	1	0	0	0	16030	1348	47	4	5	4	TKTL1	23	153524215	Missense_Mutation	SNP	G	TCGA-A8-A085-01A-11W-A019-09	24375375	153524215	1746345	67	11424										
DFFB	0	genome.wustl.edu	37	chr1	3782540	3782540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acatcgcggccgagacccggGctgaggacccgccgtggttt	15	14	0	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	1	3782540	3782540	G	A	SNP	DFFB	ENST00000378209	human	ensembl	69_37n	1	known	missense	c.406	p.A136T	0.015	pfam_Apoptosis_DFF40	pfam_Apoptosis_DFF40,pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	DFFB	HGNC	ENSG00000169598	10	0	0	12	8	40	-	-	-	A	3782540	G	A	3782540	3	1	186	1	0	0	0	0	1	0	0	0	4489	1203	42	4	416	4	DFFB	1	3782540	Missense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09		3782540	245468081	1	11425										
UBIAD1	0	genome.wustl.edu	37	chr1	11333899	11333899	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggtaatttggtcaacacttActatgacttttccaagggca	8	9	1	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	1	11333899	11333899	A	C	SNP	UBIAD1	ENST00000376810	human	ensembl	69_37n	1	known	missense	c.311	p.Y104S	1.000	pfam_UbiA_prenyltransferase	pfam_UbiA_prenyltransferase	-	no_errors	UBIAD1	HGNC	ENSG00000120942	44	0	0	18	7	26.92	-	-	-	C	11333899	A	C	11333899	3	2	186	1	0	0	0	0	1	0	0	0	16982	391	14	5	313	5	UBIAD1	1	11333899	Missense_Mutation	SNP	A	TCGA-A8-A086-01A-11W-A019-09	7551359	11333899	237916722	2	11426										
CLCNKB	0	genome.wustl.edu	37	chr1	16373087	16373087	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgctccggtatctctcctGgactgtgtaccctgtggccc	10	16	1	0			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	1	16373087	16373087	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	69_37n	1	known	nonsense	c.287	p.W96*	1.000	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908	23	0	0	22	7	24.14	-	-	-	A	16373087	G	A	16373087	4	1	186	1	0	0	0	0	0	1	0	0	3500	1357	47	4	297	4	CLCNKB	1	16373087	Nonsense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09	5039188	16373087	232877534	3	11427										
OR10J1	0	genome.wustl.edu	37	chr1	159409936	159409936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcttcctgctcacagcaatgGgatatgaccgctatgtggcc	11	12	1	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	1	159409936	159409936	G	A	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	missense	c.388	p.G130R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	238	0	0	150	85	36.17	-	-	-	A	159409936	G	A	159409936	3	1	186	1	0	0	0	0	1	0	0	0	10983	1233	43	4	390	4	OR10J1	1	159409936	Missense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09	143036849	159409936	89840685	4	11428										
SLC41A1	0	genome.wustl.edu	37	chr1	205764571	205764571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgcaggaaggtggagatgcGgctggcctgcactgccacca	16	11	0	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	1	205764571	205764571	G	A	SNP	SLC41A1	ENST00000367137	human	ensembl	69_37n	-1	known	missense	c.1108	p.R370C	1.000	pfam_MgtE_Mg_transptr_membr	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A1	HGNC	ENSG00000133065	34	0	0	38	21	35.59	-	-	-	A	205764571	G	A	205764571	3	1	186	1	0	0	0	0	1	0	0	0	14718	1116	39	1	445	1	SLC41A1	1	205764571	Missense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09	46354635	205764571	43486050	5	11429										
POLR1B	0	genome.wustl.edu	37	chr2	113333168	113333168	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacccccttcttggtctgcCatgcgcaacagaaaatacaa	6	15	2	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	2	113333168	113333168	C	T	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	silent	c.3384	p.A1128	1.000	pfam_RNA_pol_Rpb2_7	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	241	0	0	169	83	32.94	-	-	-	T	113333168	C	T	113333168	2	4	186	1	0	0	0	0	0	0	0	1	12284	581	21	4		4	POLR1B	2	113333168	Silent	SNP	C	TCGA-A8-A086-01A-11W-A019-09		113333168	129866205	6	11430										
SLC6A11	0	genome.wustl.edu	37	chr3	10967723	10967723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttattgcgtaccccaaggCggtcaccatgatgcctctct	8	14	2	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	3	10967723	10967723	C	T	SNP	SLC6A11	ENST00000254488	human	ensembl	69_37n	1	known	missense	c.1154	p.A385V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3,pfscan_Na/ntran_symport	-	no_errors	SLC6A11	HGNC	ENSG00000132164	485	0	0	290	153	34.38	-	-	-	T	10967723	C	T	10967723	3	4	186	1	0	0	0	0	1	0	0	0	14763	768	27	1	1188	1	SLC6A11	3	10967723	Missense_Mutation	SNP	C	TCGA-A8-A086-01A-11W-A019-09		10967723	187054707	7	11431										
NBEAL2	0	genome.wustl.edu	37	chr3	47047309	47047310	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	tgggccagctctcctgaggaINScttcatccagcagcaccgcc							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	3	47047309	47047310	-	G	INS	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	frame_shift_ins	c.6773_6774	p.D2258fs	1.000:1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	22	0	0	8	2	20	-	-	-	G	47047310	-	G	47047309	7	5	186	1	0	1	1	0	0	0	0	0	10261	275	10	0	6939	0	NBEAL2	3	47047309	Frame_Shift_Ins	INS	-	TCGA-A8-A086-01A-11W-A019-09	36079586	47047309	150975121	8	11432										
TMCC1	0	genome.wustl.edu	37	chr3	129546835	129546835	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggggacttccctttggggcCtctggcttgccccgcctact	12	15	1	0			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	3	129546835	129546835	C	A	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.387	p.E129D	0.588	NULL	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	101	0	0	95	50	34.48	-	-	-	A	129546835	C	A	129546835	3	1	186	1	0	0	0	0	1	0	0	0	16087	680	24	4	1590	4	TMCC1	3	129546835	Missense_Mutation	SNP	C	TCGA-A8-A086-01A-11W-A019-09	82499526	129546835	68475595	9	11433										
SH3TC1	0	genome.wustl.edu	37	chr4	8242514	8242514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcacagctgaagatctacacGcggctggccaccatctacca	9	15	2	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	4	8242514	8242514	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	silent	c.3843	p.T1281	0.071	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	12	0	0	10	5	33.33	-	-	-	A	8242514	G	A	8242514	2	1	186	1	0	0	0	0	0	0	0	1	14350	1074	38	1		1	SH3TC1	4	8242514	Silent	SNP	G	TCGA-A8-A086-01A-11W-A019-09		8242514	182911762	10	11434										
MAP3K1	0	genome.wustl.edu	37	chr5	56177874	56177875	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	acaacaacaacaacaacaacAgagcaaccaaagccaatggt							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	5	56177874	56177875	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2847_2848	p.E950fs	0.928:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	218	0	0	98	152	60.32	-	-	-	-	56177875	AG	-	56177874	7	5	186	1	0	1	0	1	0	0	0	0	9314	175	7	0	2901	0	MAP3K1	5	56177874	Frame_Shift_Del	DEL	AG	TCGA-A8-A086-01A-11W-A019-09		56177874	124737386	11	11435										
LYSMD3	0	genome.wustl.edu	37	chr5	89815283	89815284	+	Frame_Shift_Del	DEL	CT	CT	-													0	0	1	0	0	0	1	1	0	atcactgatgagattgttaaCtctcttgatatctgctacct							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	5	89815283	89815284	CT	-	DEL	LYSMD3	ENST00000315948	human	ensembl	69_37n	-1	known	frame_shift_del	c.274_273	p.R91fs	1.000:0.998	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD3	HGNC	ENSG00000176018	113	0	0	135	32	19.05	-	-	-	-	89815284	CT	-	89815283	7	5	186	1	0	1	0	1	0	0	0	0	9193	565	20	0	650	0	LYSMD3	5	89815283	Frame_Shift_Del	DEL	CT	TCGA-A8-A086-01A-11W-A019-09	33637409	89815283	91099977	12	11436										
WDR36	0	genome.wustl.edu	37	chr5	110462515	110462515	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggtggaagaaaactggacCcatttgcaatcactcttcaa	8	10	3	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	5	110462515	110462515	C	A	SNP	WDR36	ENST00000506538	human	ensembl	69_37n	1	known	silent	c.2790	p.T930	0.998	pfam_SSU_processome_Utp21	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	162	0	0	80	113	58.25	-	-	-	A	110462515	C	A	110462515	2	1	186	1	0	0	0	0	0	0	0	1	17387	610	22	4		4	WDR36	5	110462515	Silent	SNP	C	TCGA-A8-A086-01A-11W-A019-09	20647232	110462515	70452745	13	11437										
ATF6B	0	genome.wustl.edu	37	chr6	32088603	32088603	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggtgctgggaggcacagcTctggatggcattgggacagt	18	7	1	0			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	6	32088603	32088603	T	C	SNP	ATF6B	ENST00000375203	human	ensembl	69_37n	-1	known	silent	c.777	p.R259	0.824	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6B	HGNC	ENSG00000213676	101	0	0	104	64	38.1	-	-	-	C	32088603	T	C	32088603	2	2	186	1	0	0	0	0	0	0	0	1	1089	1548	54	5		5	ATF6B	6	32088603	Silent	SNP	T	TCGA-A8-A086-01A-11W-A019-09		32088603	139026464	14	11438										
FBXO24	0	genome.wustl.edu	37	chr7	100187288	100187289	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	gtgggaaagccagcaggaacINSgggggggccaagggcctagg							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	7	100187288	100187289	-	G	INS	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	frame_shift_ins	c.25_26	p.Q12fs	0.039:0.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	10	0	0	18	3	14.29	-	-	-	G	100187289	-	G	100187288	7	5	186	1	0	1	1	0	0	0	0	0	5781	527	19	0	70	0	FBXO24	7	100187288	Frame_Shift_Ins	INS	-	TCGA-A8-A086-01A-11W-A019-09		100187288	58951375	15	11439										
TARBP2	0	genome.wustl.edu	37	chr12	53899836	53899837	+	Frame_Shift_Del	DEL	TG	TG	-													0	0	1	0	0	0	1	1	0	ctgtccacccagccggccacTgtgtgtcatggctctgcaac							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	12	53899836	53899837	TG	-	DEL	TARBP2	ENST00000266987	human	ensembl	69_37n	1	known	frame_shift_del	c.1005_1006	p.C337fs	0.050:1.000	smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	TARBP2	HGNC	ENSG00000139546	27	0	0	19	6	24	-	-	-	-	53899837	TG	-	53899836	7	5	186	1	0	1	0	1	0	0	0	0	15648	1567	55	0	1039	0	TARBP2	12	53899836	Frame_Shift_Del	DEL	TG	TCGA-A8-A086-01A-11W-A019-09		53899836	79952059	16	11440										
PLXNC1	0	genome.wustl.edu	37	chr12	94620410	94620410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgcgtagaaactggctgcgCgtggtgtaaaagtgcaagaa	14	6	0	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	12	94620410	94620410	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	missense	c.1820	p.A607V	0.886	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	190	0	0	183	81	30.68	-	-	-	T	94620410	C	T	94620410	3	4	186	1	0	0	0	0	1	0	0	0	12200	768	27	1	1850	1	PLXNC1	12	94620410	Missense_Mutation	SNP	C	TCGA-A8-A086-01A-11W-A019-09	40720574	94620410	39231485	17	11441										
NQO1	0	genome.wustl.edu	37	chr16	69744912	69744912	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgatctggttgtcagttggGatggacttgcccaagtgatg	14	6	2	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	16	69744912	69744912	G	C	SNP	NQO1	ENST00000320623	human	ensembl	69_37n	-1	known	missense	c.792	p.I264M	0.996	NULL	pfam_Flavodoxin_fold,pfam_FMN_red	-	no_errors	NQO1	HGNC	ENSG00000181019	140	0	0	98	83	45.86	-	-	-	C	69744912	G	C	69744912	3	2	186	1	0	0	0	0	1	0	0	0	10684	1164	41	2	36	2	NQO1	16	69744912	Missense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09		69744912	20609841	18	11442										
KIF1C	0	genome.wustl.edu	37	chr17	4926901	4926901	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	caccactgtcaagctgggagCgggtgtcacggctcatggag							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	17	4926901	4926901	C	-	DEL	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	frame_shift_del	c.2767	p.R923fs	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	21	0	0	6	7	53.85	-	-	-	-	4926901	C	-	4926901	7	5	186	1	0	1	0	1	0	0	0	0	8337	759	27	0	2849	0	KIF1C	17	4926901	Frame_Shift_Del	DEL	C	TCGA-A8-A086-01A-11W-A019-09		4926901	76268309	19	11443										
SON	0	genome.wustl.edu	37	chr21	34924651	34924651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctatgatgtcagcctacgaGcgctctatgatgtcagccta	9	11	4	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	21	34924651	34924651	G	A	SNP	SON	ENST00000436227	human	ensembl	69_37n	1	novel	missense	c.98	p.S33N	1.000	NULL	pfam_G_patch_dom,pfam_Ds-RNA-bd,smart_G_patch_dom,smart_Ds-RNA-bd,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SON	HGNC	ENSG00000159140	128	0	0	64	10	13.51	-	-	-	A	34924651	G	A	34924651	3	1	186	1	0	0	0	0	1	0	0	0	15015	962	34	4	3124	4	SON	21	34924651	Missense_Mutation	SNP	G	TCGA-A8-A086-01A-11W-A019-09		34924651	13205244	20	11444										
UBASH3A	0	genome.wustl.edu	37	chr21	43833311	43833311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attcgccatgaccttcgccaCggaagcatctctcttagcag	8	14	2	1			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	21	43833311	43833311	C	T	SNP	UBASH3A	ENST00000319294	human	ensembl	69_37n	1	known	missense	c.533	p.T178M	0.107	NULL	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185	129	0	0	89	42	32.06	-	-	-	T	43833311	C	T	43833311	3	4	186	1	0	0	0	0	1	0	0	0	16936	536	19	1	547	1	UBASH3A	21	43833311	Missense_Mutation	SNP	C	TCGA-A8-A086-01A-11W-A019-09	8908660	43833311	4296584	21	11445										
SBF1	0	genome.wustl.edu	37	chr22	50899119	50899119	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	cgctgtcagaccccacctccTcgtcaaaggccattttcagc							TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	22	50899119	50899119	T	-	DEL	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	frame_shift_del	c.2990	p.E997fs	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	62	0	0	18	2	10	-	-	-	-	50899119	T	-	50899119	7	5	186	1	0	1	0	1	0	0	0	0	13945	1551	54	0	2763	0	SBF1	22	50899119	Frame_Shift_Del	DEL	T	TCGA-A8-A086-01A-11W-A019-09		50899119	405447	22	11446										
OPN1MW	0	genome.wustl.edu	37	chrX	153461447	153461447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aactgcatcttgcagcttttCgggaagaaggttgacgatgg	13	7	1	2			TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13d89926-9e4c-434f-80b4-4fb15e4426f6	1af700be-a789-4f68-bd75-290aeed2fd7b	X	153461447	153461447	C	T	SNP	OPN1MW	ENST00000430054	human	ensembl	69_37n	1	novel	missense	c.409	p.R137W	1.000	pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OPN1MW	HGNC	ENSG00000147380	73	0	0	60	11	15.49	-	-	-	T	153461447	C	T	153461447	3	4	186	1	0	0	0	0	1	0	0	0	10951	883	31	1	1033	1	OPN1MW	23	153461447	Missense_Mutation	SNP	C	TCGA-A8-A086-01A-11W-A019-09		153461447	1809113	23	11447										
PIP5K1A	0	genome.wustl.edu	37	chr1	151204807	151204807	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	tgttgccttccgctacttccGggagctatttggtatccggc							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	1	151204807	151204807	G	-	DEL	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	frame_shift_del	c.452	p.E152fs	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	220	0	0	392	54	11.89	-	-	-	-	151204807	G	-	151204807	7	5	187	1	0	1	0	1	0	0	0	0	12013	1116	39	0	474	0	PIP5K1A	1	151204807	Frame_Shift_Del	DEL	G	TCGA-A8-A08A-01A-11W-A019-09		151204807	98045814	1	11448										
CCDC88A	0	genome.wustl.edu	37	chr2	55549817	55549818	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	tctgtttgagagcttcataaINSttttttttcacctaaaattt							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	55549817	55549818	-	T	INS	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3009_3008	p.N1003fs	1.000:1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	107	0	0	93	24	20.51	-	-	-	T	55549818	-	T	55549817	7	5	187	1	0	1	1	0	0	0	0	0	2890	98	4	0	2666	0	CCDC88A	2	55549817	Frame_Shift_Ins	INS	-	TCGA-A8-A08A-01A-11W-A019-09		55549817	187649556	2	11449										
ERBB4	0	genome.wustl.edu	37	chr2	212248393	212248393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcggcagcacagtgcctgGcttcagggagaactcagaga	15	10	2	2			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	212248393	212248393	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.3874	p.P1292S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	129	0	0	75	30	28.57	-	-	-	A	212248393	G	A	212248393	3	1	187	1	0	0	0	0	1	0	0	0	5246	1203	42	4	56	4	ERBB4	2	212248393	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09	156698576	212248393	30950980	3	11450										
ZNF142	0	genome.wustl.edu	37	chr2	219514141	219514141	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgcttacactctggacacaTatgggtcttgaagagggact	12	9	2	2			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	219514141	219514141	T	C	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	missense	c.490	p.M164V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	26	0	0	16	10	38.46	-	-	-	C	219514141	T	C	219514141	3	2	187	1	0	0	0	0	1	0	0	0	17827	1406	49	5	4593	5	ZNF142	2	219514141	Missense_Mutation	SNP	T	TCGA-A8-A08A-01A-11W-A019-09	7265748	219514141	23685232	4	11451										
C4orf6	0	genome.wustl.edu	37	chr4	5528055	5528055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cactcaactgcagtgcatcaAtgaaggtaactttctgtcca	7	11	3	1			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	4	5528055	5528055	A	G	SNP	C4orf6	ENST00000505296	human	ensembl	69_37n	1	novel	missense	c.241	p.M81V	0.024	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C4orf6	HGNC	ENSG00000082929	126	0	0	93	48	34.04	-	-	-	G	5528055	A	G	5528055	3	3	187	1	0	0	0	0	1	0	0	0	2299	98	4	5	285	5	C4orf6	4	5528055	Missense_Mutation	SNP	A	TCGA-A8-A08A-01A-11W-A019-09		5528055	185626221	5	11452										
IGFBP7	0	genome.wustl.edu	37	chr4	57907076	57907077	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	gtgacattccagatgtccttINSggggggcgtcactatggaag							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	4	57907076	57907077	-	G	INS	IGFBP7	ENST00000295666	human	ensembl	69_37n	-1	known	frame_shift_ins	c.499_498	p.K166fs	1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	IGFBP7	HGNC	ENSG00000163453	78	0	0	62	7	10.14	-	-	-	G	57907077	-	G	57907076	7	5	187	1	0	1	1	0	0	0	0	0	7638	1821	63	0	365	0	IGFBP7	4	57907076	Frame_Shift_Ins	INS	-	TCGA-A8-A08A-01A-11W-A019-09	52379021	57907076	133247200	6	11453										
TMEM161B	0	genome.wustl.edu	37	chr5	87494931	87494931	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcacacagcaggattattaaCcagagtcgcagagtatcgaa	10	9	0	2			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	5	87494931	87494931	C	A	SNP	TMEM161B	ENST00000296595	human	ensembl	69_37n	-1	known	missense	c.951	p.W317C	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180	38	0	0	48	24	33.33	-	-	-	A	87494931	C	A	87494931	3	1	187	1	0	0	0	0	1	0	0	0	16172	508	18	4	524	4	TMEM161B	5	87494931	Missense_Mutation	SNP	C	TCGA-A8-A08A-01A-11W-A019-09		87494931	93420329	7	11454										
FAT2	0	genome.wustl.edu	37	chr5	150948304	150948304	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcactgcccactgtggctcCgcgaggtagatgcccatttt	10	14	1	1			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	5	150948304	150948304	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.189	p.A63	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	237	0	0	117	66	36.07	-	-	-	T	150948304	C	T	150948304	2	4	187	1	0	0	0	0	0	0	0	1	5736	639	23	1		1	FAT2	5	150948304	Silent	SNP	C	TCGA-A8-A08A-01A-11W-A019-09	63453373	150948304	29966956	8	11455										
LPA	0	genome.wustl.edu	37	chr6	161007564	161007564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attccatcactggacattgcGtcaggttgcagtactcccat	8	12	2	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	6	161007564	161007564	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.4046	p.T1349M	0.337	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	341	0	0	210	112	34.78	-	-	-	A	161007564	G	A	161007564	3	1	187	1	0	0	0	0	1	0	0	0	8969	1145	40	1	2136	1	LPA	6	161007564	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09		161007564	10107503	9	11456										
GTF2IRD1	0	genome.wustl.edu	37	chr7	73961494	73961494	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccaagtttctgatgcacccGgaggagctgtttgtggtggg	15	8	1	1			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	7	73961494	73961494	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	69_37n	1	known	silent	c.1794	p.P598	0.291	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704	28	0	0	30	6	16.22	-	-	-	A	73961494	G	A	73961494	2	1	187	1	0	0	0	0	0	0	0	1	6919	1103	39	1		1	GTF2IRD1	7	73961494	Silent	SNP	G	TCGA-A8-A08A-01A-11W-A019-09		73961494	85177169	10	11457										
PSIP1	0	genome.wustl.edu	37	chr9	15474030	15474032	+	In_Frame_Del	DEL	CTT	CTT	-													0	0	1	0	0	0	1	1	0	ttcaccttcttgatcatctcCttcttcttcagaatcggagg							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	15474030	15474032	CTT	-	DEL	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	in_frame_del	c.835_833	p.E278in_frame_del	1.000:0.993:1.000	prints_Treacle-like_TCS	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	447	0	0	358	115	24.31	-	-	-	-	15474032	CTT	-	15474030	7	5	187	1	0	1	0	1	0	0	0	0	12743	690	24	0	818	0	PSIP1	9	15474030	In_Frame_Del	DEL	CTT	TCGA-A8-A08A-01A-11W-A019-09		15474030	125739401	11	11458										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69421983	69421983	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caaaacaacttgaaccaactGttcagtcactagagatgaaa	6	9	2	3			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	69421983	69421983	G	C	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.1447	p.V483L	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	32	0	0	29	7	19.44	-	-	-	C	69421983	G	C	69421983	3	2	187	1	0	0	0	0	1	0	0	0	650	1377	48	4	1501	4	ANKRD20A4	9	69421983	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09	53947953	69421983	71791448	12	11459										
TBC1D2	0	genome.wustl.edu	37	chr9	100983164	100983164	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	tcaggaagtccctgttggcaGcgtcggggcgcaaaggagac							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	100983164	100983164	G	-	DEL	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	frame_shift_del	c.1325	p.A442fs	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	25	0	0	16	7	30.43	-	-	-	-	100983164	G	-	100983164	7	5	187	1	0	1	0	1	0	0	0	0	15700	971	34	0	1460	0	TBC1D2	9	100983164	Frame_Shift_Del	DEL	G	TCGA-A8-A08A-01A-11W-A019-09	31561181	100983164	40230267	13	11460										
RTKN2	0	genome.wustl.edu	37	chr10	63964752	63964752	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttatggattcttttcttggcAtccttatccattgcccggat	7	10	2	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	10	63964752	63964752	A	T	SNP	RTKN2	ENST00000373789	human	ensembl	69_37n	-1	known	missense	c.1050	p.D350E	0.358	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	123	0	0	101	50	33.11	-	-	-	T	63964752	A	T	63964752	3	4	187	1	0	0	0	0	1	0	0	0	13809	214	8	5	791	5	RTKN2	10	63964752	Missense_Mutation	SNP	A	TCGA-A8-A08A-01A-11W-A019-09		63964752	71569995	14	11461										
FMNL3	0	genome.wustl.edu	37	chr12	50052270	50052270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagcgaggctgttggtgaagGgggccgacagggcgctgggt	22	7	0	1			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	12	50052270	50052270	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.560	p.P187L	1.000	superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	48	0	0	34	22	39.29	-	-	-	A	50052270	G	A	50052270	3	1	187	1	0	0	0	0	1	0	0	0	5999	1232	43	4	2607	4	FMNL3	12	50052270	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09		50052270	83799625	15	11462										
GPR133	0	genome.wustl.edu	37	chr12	131622702	131622703	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	tgagagccgccttcaagcacINSaaaaccaaggtctggtcgct							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	12	131622702	131622703	-	A	INS	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	frame_shift_ins	c.2457_2458	p.T820fs	1.000:1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	44	0	0	16	2	11.11	-	-	-	A	131622703	-	A	131622702	7	5	187	1	0	1	1	0	0	0	0	0	6693	477	17	0	2551	0	GPR133	12	131622702	Frame_Shift_Ins	INS	-	TCGA-A8-A08A-01A-11W-A019-09	81570432	131622702	2229193	16	11463										
MTUS2	0	genome.wustl.edu	37	chr13	29600217	29600217	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaggaaaggcggttgggcaGtgggaataaggacagtgtta	19	3	0	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	13	29600217	29600217	G	T	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	missense	c.1412	p.S471I	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	197	0	0	101	48	32.21	-	-	-	T	29600217	G	T	29600217	3	4	187	1	0	0	0	0	1	0	0	0	10038	1029	36	4	1414	4	MTUS2	13	29600217	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09		29600217	85569661	17	11464										
FOXA1	0	genome.wustl.edu	37	chr14	38061222	38061222	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcggcgcaagtagcagccgTtctcgaacatgttgccggag	15	11	1	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	14	38061222	38061222	T	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.767	p.N256I	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	21	0	0	18	4	18.18	-	-	-	A	38061222	T	A	38061222	3	1	187	1	0	0	0	0	1	0	0	0	6035	1725	60	5	655	5	FOXA1	14	38061222	Missense_Mutation	SNP	T	TCGA-A8-A08A-01A-11W-A019-09		38061222	69288318	18	11465										
THBS1	0	genome.wustl.edu	37	chr15	39883401	39883402	+	Frame_Shift_Ins	INS	-	-	CA													0	0	1	0	0	0	1	1	0	ctctttgcaggacaactgtcINScattccattacaacccagct							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	39883401	39883402	-	CA	INS	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	frame_shift_ins	c.2263_2264	p.F756fs	1.000:0.999	NULL	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	146	0	0	82	21	20.39	-	-	-	CA	39883402	-	CA	39883401	7	5	187	1	0	1	1	0	0	0	0	0	15948	855	30	0	2317	0	THBS1	15	39883401	Frame_Shift_Ins	INS	-	TCGA-A8-A08A-01A-11W-A019-09		39883401	62647991	19	11466										
PLA2G4E	0	genome.wustl.edu	37	chr15	42284983	42284983	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggccccagaagtctgtaaaGgtgaccctgtagccttcctg	11	12	1	2			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	42284983	42284983	G	A	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	silent	c.1335	p.T445	0.992	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	51	0	0	24	8	25	-	-	-	A	42284983	G	A	42284983	2	1	187	1	0	0	0	0	0	0	0	1	12079	987	35	4		4	PLA2G4E	15	42284983	Silent	SNP	G	TCGA-A8-A08A-01A-11W-A019-09	2401582	42284983	60246409	20	11467										
HERC1	0	genome.wustl.edu	37	chr15	63944671	63944671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttcttggtaacattccataCgcggatggtgccatcattgc	9	11	2	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	63944671	63944671	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.10360	p.V3454I	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	53	0	0	33	22	40	-	-	-	T	63944671	C	T	63944671	3	4	187	1	0	0	0	0	1	0	0	0	7108	536	19	1	4333	1	HERC1	15	63944671	Missense_Mutation	SNP	C	TCGA-A8-A08A-01A-11W-A019-09	21659688	63944671	38586721	21	11468										
GTF3C1	0	genome.wustl.edu	37	chr16	27506805	27506805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaatcctagagaacgccccaGtccgggaactaaagcaagag	10	11	0	2			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	16	27506805	27506805	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	silent	c.2359	p.L787	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	22	0	0	20	4	16.67	-	-	-	A	27506805	G	A	27506805	2	1	187	1	0	0	0	0	0	0	0	1	6923	1020	36	4		4	GTF3C1	16	27506805	Silent	SNP	G	TCGA-A8-A08A-01A-11W-A019-09		27506805	62847948	22	11469										
ABCA8	0	genome.wustl.edu	37	chr17	66925817	66925817	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggccataatgaagatgaaaCcagcatagagcaaaccccag	10	10	0	4			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	17	66925817	66925817	C	A	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.824	p.G275V	0.025	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	336	0	0	217	88	28.85	-	-	-	A	66925817	C	A	66925817	3	1	187	1	0	0	0	0	1	0	0	0	38	507	18	4	4049	4	ABCA8	17	66925817	Missense_Mutation	SNP	C	TCGA-A8-A08A-01A-11W-A019-09		66925817	14269393	23	11470										
FCHO1	0	genome.wustl.edu	37	chr19	17881246	17881248	+	In_Frame_Del	DEL	GTG	GTG	-													0	0	1	0	0	0	1	1	0	ccccgcagtgcaaggaggaaGtggtgagcaccttggatgct							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	19	17881246	17881248	GTG	-	DEL	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	in_frame_del	c.349_351	p.V118in_frame_del	0.843:0.631:0.438	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	21	0	0	30	7	18.92	-	-	-	-	17881248	GTG	-	17881246	7	5	187	1	0	1	0	1	0	0	0	0	5833	1029	36	0	367	0	FCHO1	19	17881246	In_Frame_Del	DEL	GTG	TCGA-A8-A08A-01A-11W-A019-09		17881246	41247737	24	11471										
BMX	0	genome.wustl.edu	37	chrX	15540601	15540601	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttcaagtaccagtctagcgCaatatgacagcaactcaaag	7	11	3	1			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	15540601	15540601	C	T	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	nonsense	c.643	p.Q215*	0.005	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	631	2	0.31	432	219	33.64	-	-	-	T	15540601	C	T	15540601	4	4	187	1	0	0	0	0	0	1	0	0	1478	711	25	4	665	4	BMX	23	15540601	Nonsense_Mutation	SNP	C	TCGA-A8-A08A-01A-11W-A019-09		15540601	139729959	25	11472										
FAM123B	0	genome.wustl.edu	37	chrX	63411447	63411447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ggcctcaagctgctcccgccGaagctcccaatacaacaact	7	17	1	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	63411447	63411447	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.1720	p.R574W	0.035	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	142	0	0	121	41	25.31	-	-	-	A	63411447	G	A	63411447	3	1	187	1	0	0	0	0	1	0	0	0	5463	1057	37	1	1691	1	FAM123B	23	63411447	Missense_Mutation	SNP	G	TCGA-A8-A08A-01A-11W-A019-09	47870846	63411447	91859113	26	11473										
MED12	0	genome.wustl.edu	37	chrX	70340011	70340011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttaagaagagacatgttgacCctttcatgggtgagtaactc	10	7	1	4			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	70340011	70340011	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.544	p.P182S	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	276	0	0	128	60	31.91	-	-	-	T	70340011	C	T	70340011	3	4	187	1	0	0	0	0	1	0	0	0	9499	623	22	4	558	4	MED12	23	70340011	Missense_Mutation	SNP	C	TCGA-A8-A08A-01A-11W-A019-09	6928564	70340011	84930549	27	11474										
ARMCX1	0	genome.wustl.edu	37	chrX	100808906	100808907	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	tttcctattcttttccagacINSttttttgctttgttattcct							TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	100808906	100808907	-	T	INS	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	frame_shift_ins	c.993_994	p.A333fs	0.997:0.998	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	417	0	0	408	90	18.07	-	-	-	T	100808907	-	T	100808906	7	5	187	1	0	1	1	0	0	0	0	0	963	564	20	0	995	0	ARMCX1	23	100808906	Frame_Shift_Ins	INS	-	TCGA-A8-A08A-01A-11W-A019-09	30468895	100808906	54461654	28	11475										
VSIG1	0	genome.wustl.edu	37	chrX	107320387	107320387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcatgagactggccctgatAccatccaagaaccagactat	7	12	1	4			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	107320387	107320387	A	G	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.1048	p.T350A	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	421	1	0.24	281	129	31.31	-	-	-	G	107320387	A	G	107320387	3	3	187	1	0	0	0	0	1	0	0	0	17319	391	14	5	1078	5	VSIG1	23	107320387	Missense_Mutation	SNP	A	TCGA-A8-A08A-01A-11W-A019-09	6511481	107320387	47950173	29	11476										
UPF3B	0	genome.wustl.edu	37	chrX	118986832	118986832	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaccgctgcctgtggccccGgcgggggttaacagggttac	15	14	0	0			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	118986832	118986832	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	silent	c.60	p.A20	0.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	125	0	0	114	60	33.71	-	-	-	A	118986832	G	A	118986832	2	1	187	1	0	0	0	0	0	0	0	1	17103	1103	39	1		1	UPF3B	23	118986832	Silent	SNP	G	TCGA-A8-A08A-01A-11W-A019-09	11666445	118986832	36283728	30	11477										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	39	0	0	37	6	13.95	-	-	-	A	12980232	G	A	12980232	2	1	188	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		12980232	236270389	1	11478										
GBP6	0	genome.wustl.edu	37	chr1	89849788	89849788	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	caactgaaggagaagctgcaGatggagagagaacacctact	12	8	0	5			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	89849788	89849788	G	A	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	silent	c.1605	p.Q535	0.015	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	153	0	0	66	13	16.46	-	-	-	A	89849788	G	A	89849788	2	1	188	1	0	0	0	0	0	0	0	1	6328	933	33	2		2	GBP6	1	89849788	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09	76869556	89849788	159400833	2	11479										
RC3H1	0	genome.wustl.edu	37	chr1	173939653	173939653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tcacacttacttttccagttCctcctgtgagtgtgcaaatg	7	11	1	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	173939653	173939653	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.1324	p.E442K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	228	0	0	103	135	56.72	-	-	-	T	173939653	C	T	173939653	3	4	188	1	0	0	0	0	1	0	0	0	13249	864	30	2	2125	2	RC3H1	1	173939653	Missense_Mutation	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	84089865	173939653	75310968	3	11480										
DISP1	0	genome.wustl.edu	37	chr1	223177609	223177609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gatatccagtgagctgagttCggcccctgaaggcctcagca	12	12	1	3			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	223177609	223177609	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.2870	p.S957L	0.034	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	94	0	0	60	35	36.84	-	-	-	T	223177609	C	T	223177609	3	4	188	1	0	0	0	0	1	0	0	0	4575	893	31	1	2896	1	DISP1	1	223177609	Missense_Mutation	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	49237956	223177609	26073012	4	11481										
RAPGEF4	0	genome.wustl.edu	37	chr2	173900899	173900900	+	Frame_Shift_Ins	INS	-	-	G													0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	aggctgacagtagctaagctINSggaacctcctctcatcccct							TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	2	173900899	173900900	-	G	INS	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	frame_shift_ins	c.2747_2748	p.E917fs	1.000:1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	274	0	0	193	24	11.06	-	-	-	G	173900900	-	G	173900899	7	5	188	1	0	1	1	0	0	0	0	0	13129	1580	55	0	2873	0	RAPGEF4	2	173900899	Frame_Shift_Ins	INS	-	TCGA-A8-A08B-01A-11W-A019-09		173900899	69298474	5	11482										
SPEG	0	genome.wustl.edu	37	chr2	220354586	220354586	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tgggagcagtccccgaagctCtcccaggcctgagggtacca	13	14	1	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	2	220354586	220354586	C	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.8846	p.S2949F	0.990	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	17	0	0	4	5	55.56	-	-	-	T	220354586	C	T	220354586	3	4	188	1	0	0	0	0	1	0	0	0	15127	913	32	2	9000	2	SPEG	2	220354586	Missense_Mutation	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	46453687	220354586	22844787	6	11483										
FYCO1	0	genome.wustl.edu	37	chr3	46008081	46008081	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	actcgctccttttccacggtCagtgcgcaaacctggatgcc	9	15	1	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	3	46008081	46008081	C	T	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	silent	c.2745	p.L915	0.986	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	55	0	0	28	4	12.5	-	-	-	T	46008081	C	T	46008081	2	4	188	1	0	0	0	0	0	0	0	1	6174	813	29	2		2	FYCO1	3	46008081	Silent	SNP	C	TCGA-A8-A08B-01A-11W-A019-09		46008081	152014349	7	11484										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	133	0	0	53	35	39.77	-	-	-	A	178936091	G	A	178936091	3	1	188	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09	132928010	178936091	19086339	8	11485										
GPR125	0	genome.wustl.edu	37	chr4	22440036	22440036	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	agcctgaatattagaaatggTtagggcactgcataaagaaa	10	5	0	3			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	22440036	22440036	T	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.928	p.T310S	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	223	0	0	46	18	28.12	-	-	-	A	22440036	T	A	22440036	3	1	188	1	0	0	0	0	1	0	0	0	6689	1725	60	5	3085	5	GPR125	4	22440036	Missense_Mutation	SNP	T	TCGA-A8-A08B-01A-11W-A019-09		22440036	168714240	9	11486										
UGT2B7	0	genome.wustl.edu	37	chr4	69973882	69973882	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	aatggcatctacgaggcaatCtaccatgggatccctatggt	10	10	2	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	69973882	69973882	C	T	SNP	UGT2B7	ENST00000305231	human	ensembl	69_37n	1	known	silent	c.1152	p.I384	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234	283	0	0	146	26	15.12	-	-	-	T	69973882	C	T	69973882	2	4	188	1	0	0	0	0	0	0	0	1	17059	903	32	2		2	UGT2B7	4	69973882	Silent	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	47533846	69973882	121180394	10	11487										
TRPC3	0	genome.wustl.edu	37	chr4	122853579	122853579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	cgtgagtggctgaaggagtcGtgcctctgcttctccatgca	13	11	2	2			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	122853579	122853579	G	A	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	silent	c.834	p.H278	0.989	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	34	0	0	28	8	22.22	-	-	-	A	122853579	G	A	122853579	2	1	188	1	0	0	0	0	0	0	0	1	16675	1136	40	1		1	TRPC3	4	122853579	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09	52879697	122853579	68300697	11	11488										
PDZD2	0	genome.wustl.edu	37	chr5	32088972	32088972	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gcctggtttaaagaaataaaTaaacataaccaaggcacaca	6	8	0	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	5	32088972	32088972	T	C	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	silent	c.5418	p.N1806	0.007	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	143	0	0	82	49	37.4	-	-	-	C	32088972	T	C	32088972	2	2	188	1	0	0	0	0	0	0	0	1	11774	1403	49	5		5	PDZD2	5	32088972	Silent	SNP	T	TCGA-A8-A08B-01A-11W-A019-09		32088972	148826288	12	11489										
MED23	0	genome.wustl.edu	37	chr6	131908938	131908938	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gctaatgtgtgtgatgaatcGaagacgaagttttaaagctg	12	4	0	3			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	6	131908938	131908938	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.4006	p.R1336*	1.000	NULL	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	179	1	0.56	82	22	21.15	-	-	-	A	131908938	G	A	131908938	4	1	188	1	0	0	0	0	0	1	0	0	9512	1066	37	1	129	1	MED23	6	131908938	Nonsense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		131908938	39206129	13	11490										
AKAP9	0	genome.wustl.edu	37	chr7	91652213	91652213	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gttcaagaattagaaagcctCatatcctctttgcagcaaca	6	10	3	2			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	7	91652213	91652213	C	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	silent	c.4074	p.L1358	0.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	179	0	0	101	44	30.34	-	-	-	G	91652213	C	G	91652213	2	3	188	1	0	0	0	0	0	0	0	1	459	813	29	2		2	AKAP9	7	91652213	Silent	SNP	C	TCGA-A8-A08B-01A-11W-A019-09		91652213	67486450	14	11491										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105363029	105363029	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	ttttcctggtcagggacagcGaggagctgcctggggagtcg	17	9	1	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	10	105363029	105363029	G	T	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	nonsense	c.1946	p.S649*	0.144	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	74	0	0	72	8	10	-	-	-	T	105363029	G	T	105363029	4	4	188	1	0	0	0	0	0	1	0	0	14345	1059	37	3	1459	3	SH3PXD2A	10	105363029	Nonsense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		105363029	30171718	15	11492										
OR10A3	0	genome.wustl.edu	37	chr11	7960264	7960264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gagatcagtttcttggtttcGggtgagtagccagatttggg	15	5	2	3			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	11	7960264	7960264	G	A	SNP	OR10A3	ENST00000360759	human	ensembl	69_37n	-1	known	silent	c.804	p.P268	0.800	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A3	HGNC	ENSG00000170683	286	2	0.69	221	52	18.98	-	-	-	A	7960264	G	A	7960264	2	1	188	1	0	0	0	0	0	0	0	1	10964	1103	39	1		1	OR10A3	11	7960264	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		7960264	127046252	16	11493										
ACVR1B	0	genome.wustl.edu	37	chr12	52370172	52370172	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gtggagctggtaggcatcatCgccggcccggtgttcctcct	14	13	1	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	12	52370172	52370172	C	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	silent	c.393	p.I131	0.994	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	122	1	0.81	92	54	36.99	-	-	-	T	52370172	C	T	52370172	2	4	188	1	0	0	0	0	0	0	0	1	221	874	31	1		1	ACVR1B	12	52370172	Silent	SNP	C	TCGA-A8-A08B-01A-11W-A019-09		52370172	81481723	17	11494										
BRCA2	0	genome.wustl.edu	37	chr13	32912296	32912298	+	In_Frame_Del	DEL	TGT	TGT	-													0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tcaagtaaatgtcatgattcTgttgtttcaatgtttaagat							TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	13	32912296	32912298	TGT	-	DEL	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	in_frame_del	c.3804_3806	p.V1270in_frame_del	0.207:0.005:0.021	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	81	0	0	20	25	55.56	-	-	-	-	32912298	TGT	-	32912296	7	5	188	1	0	1	0	1	0	0	0	0	1507	1567	55	0	3842	0	BRCA2	13	32912296	In_Frame_Del	DEL	TGT	TCGA-A8-A08B-01A-11W-A019-09		32912296	82257582	18	11495										
PTGDR	0	genome.wustl.edu	37	chr14	52741544	52741544	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gccttgcgatttctatctgtGatttcaattgtggacccttg	9	9	3	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	14	52741544	52741544	G	C	SNP	PTGDR	ENST00000306051	human	ensembl	69_37n	1	known	silent	c.942	p.V314	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Pglndn_D_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229	114	0	0	58	35	37.63	-	-	-	C	52741544	G	C	52741544	2	2	188	1	0	0	0	0	0	0	0	1	12821	1277	45	2		2	PTGDR	14	52741544	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		52741544	54607996	19	11496										
HERC1	0	genome.wustl.edu	37	chr15	63958635	63958635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	ctgcaattgctggaggaggaGgagaagttgaaagtctactg	15	5	1	2			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	15	63958635	63958635	G	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.8243	p.P2748L	1.000	superfamily_UBA-like	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	156	0	0	61	35	36.46	-	-	-	A	63958635	G	A	63958635	3	1	188	1	0	0	0	0	1	0	0	0	7108	1000	35	4	6494	4	HERC1	15	63958635	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		63958635	38572757	20	11497										
BNC1	0	genome.wustl.edu	37	chr15	83932783	83932783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gcagccgagggttggggttgGcgctatggcgattccggctc	18	10	0	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	15	83932783	83932783	G	A	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.1220	p.A407V	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	145	0	0	52	38	41.76	-	-	-	A	83932783	G	A	83932783	3	1	188	1	0	0	0	0	1	0	0	0	1479	1203	42	4	1772	4	BNC1	15	83932783	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09	19974148	83932783	18598609	21	11498										
BCL6B	0	genome.wustl.edu	37	chr17	6929853	6929853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tggactccttggttcctgggGacgaagacaaaccctataag	11	10	0	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	17	6929853	6929853	G	T	SNP	BCL6B	ENST00000293805	human	ensembl	69_37n	1	known	missense	c.967	p.D323Y	0.261	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940	60	0	0	47	7	12.96	-	-	-	T	6929853	G	T	6929853	3	4	188	1	0	0	0	0	1	0	0	0	1381	1174	41	2	985	2	BCL6B	17	6929853	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		6929853	74265357	22	11499										
TBC1D3B	0	genome.wustl.edu	37	chr17	34493597	34493597	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	atggcacggacccagcagctCtgtctgaaatcataatggcg	11	11	3	1			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	17	34493597	34493597	C	T	SNP	TBC1D3B	ENST00000398801	human	ensembl	69_37n	-1	known	silent	c.1428	p.Q476	0.127	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3B	HGNC	ENSG00000224226	24	0	0	34	14	29.17	-	-	-	T	34493597	C	T	34493597	2	4	188	1	0	0	0	0	0	0	0	1	15713	912	32	2		2	TBC1D3B	17	34493597	Silent	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	27563744	34493597	46701613	23	11500										
ACLY	0	genome.wustl.edu	37	chr17	40068795	40068798	+	Frame_Shift_Del	DEL	TCTG	TCTG	-													0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gtctggcttgactaccaagtTctggaacaaaagcggtttgt							TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	TCTG	TCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	17	40068795	40068798	TCTG	-	DEL	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	frame_shift_del	c.160	p.N54fs	0.997	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	87	0	0	66	35	34.65	-	-	-	-	40068798	TCTG	-	40068795	7	5	188	1	0	1	0	1	0	0	0	0	143	1797	62	0	3253	0	ACLY	17	40068795	Frame_Shift_Del	DEL	TCTG	TCGA-A8-A08B-01A-11W-A019-09	5575198	40068795	41126415	24	11501										
ALPK2	0	genome.wustl.edu	37	chr18	56191061	56191061	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tagtatcctggcgacttgacAgctgtttgagaactagaaga	11	7	0	4			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	18	56191061	56191061	A	C	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.5642	p.L1881R	0.993	superfamily_Kinase-like_dom	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	205	0	0	44	47	51.09	-	-	-	C	56191061	A	C	56191061	3	2	188	1	0	0	0	0	1	0	0	0	545	188	7	5	894	5	ALPK2	18	56191061	Missense_Mutation	SNP	A	TCGA-A8-A08B-01A-11W-A019-09		56191061	21886187	25	11502										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10224677	10224677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tcagcctcaaccgctacctgGgcatcgtgcaccccttcttc	7	18	3	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	10224677	10224677	G	T	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	missense	c.1648	p.G550C	1.000	pfam_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	26	0	0	10	14	58.33	-	-	-	T	10224677	G	T	10224677	3	4	188	1	0	0	0	0	1	0	0	0	12362	1232	43	4		4	PPAN-P2RY11	19	10224677	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		10224677	48904306	26	11503										
IL27RA	0	genome.wustl.edu	37	chr19	14143204	14143204	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	gactccctctccaggcagcgCcgggccactgcagtgctacg	12	17	1	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	14143204	14143204	C	G	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.107	p.A36G	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	52	0	0	21	13	38.24	-	-	-	G	14143204	C	G	14143204	3	3	188	1	0	0	0	0	1	0	0	0	7735	739	26	4	113	4	IL27RA	19	14143204	Missense_Mutation	SNP	C	TCGA-A8-A08B-01A-11W-A019-09	3918527	14143204	44985779	27	11504										
AHCY	0	genome.wustl.edu	37	chr20	32878392	32878392	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	tcaatacagcctgtggtggtGacaaagatgttgccctcctg	11	10	1	2			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	20	32878392	32878392	G	A	SNP	AHCY	ENST00000217426	human	ensembl	69_37n	-1	known	silent	c.819	p.V273	0.999	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444	167	0	0	138	83	37.56	-	-	-	A	32878392	G	A	32878392	2	1	188	1	0	0	0	0	0	0	0	1	409	1277	45	2		2	AHCY	20	32878392	Silent	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		32878392	30147128	28	11505										
AP1B1	0	genome.wustl.edu	37	chr22	29727482	29727482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	ggatgtgcagtgggtacaagGtgctgaagtagaagacatcg	16	5	0	3			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	22	29727482	29727482	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.2480	p.T827I	1.000	superfamily_Coatomer/clathrin_app_Ig-like	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	89	0	0	62	12	16.22	-	-	-	A	29727482	G	A	29727482	3	1	188	1	0	0	0	0	1	0	0	0	732	1261	44	4	389	4	AP1B1	22	29727482	Missense_Mutation	SNP	G	TCGA-A8-A08B-01A-11W-A019-09		29727482	21577084	29	11506										
FLNA	0	genome.wustl.edu	37	chrX	153593204	153593204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	10	0.00146748821073596	3.59925788497217	5.03896103896104	3.35930735930736	0.0230141375652211	0.244650288465068	7	cttacccagcgtgcccacgtCgtccccgatagcctccacca	7	20	0	0			TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	X	153593204	153593204	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.1813	p.D605N	0.993	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	23	0	0	21	9	30	-	-	-	T	153593204	C	T	153593204	3	4	188	1	0	0	0	0	1	0	0	0	5979	884	31	1	6278	1	FLNA	23	153593204	Missense_Mutation	SNP	C	TCGA-A8-A08B-01A-11W-A019-09		153593204	1677356	30	11507										
THEM5	0	genome.wustl.edu	37	chr1	151819737	151819738	+	Frame_Shift_Del	DEL	GG	GG	-													0	0	1	NA	NA	NA	1	1	0	caggaggcaggaggcaggcaGgggaggcaggaggcaggcag							TCGA-A8-A08C-01A-11W-A019-09	TCGA-A8-A08C-10A-01W-A021-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54c486e6-9a10-4fcc-877d-f587f772cfd6	1e1356c6-9919-47fc-9d6b-ad2ac256249c	1	151819737	151819738	GG	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.642_641	p.P214fs	0.878:0.888	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	11	0	0	4	2	33.33	-	-	-	-	151819738	GG	-	151819737	7	5	189	1	0	1	0	1	0	0	0	0	15954	1015	35	0		0	THEM5	1	151819737	Frame_Shift_Del	DEL	GG	TCGA-A8-A08C-01A-11W-A019-09		151819737	97430884	1	11508										
GNAS	0	genome.wustl.edu	37	chr20	57429300	57429301	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	NA	NA	NA	1	1	0	actcccgtcaacatggacagINSccccccaatcgcgcttgacg							TCGA-A8-A08C-01A-11W-A019-09	TCGA-A8-A08C-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54c486e6-9a10-4fcc-877d-f587f772cfd6	1e1356c6-9919-47fc-9d6b-ad2ac256249c	20	57429300	57429301	-	C	INS	GNAS	ENST00000371100	human	ensembl	69_37n	1	putative	frame_shift_ins	c.980_981	p.I330fs	1.000:1.000	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	10	0	0	4	2	33.33	-	-	-	C	57429301	-	C	57429300	7	5	189	1	0	1	1	0	0	0	0	0	6562	971	34	0	1724	0	GNAS	20	57429300	Frame_Shift_Ins	INS	-	TCGA-A8-A08C-01A-11W-A019-09		57429300	5596220	2	11509										
PADI3	0	genome.wustl.edu	37	chr1	17606863	17606863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agatgatgagcaggtcaagaCcatctccatcaaccaggtgc	10	11	3	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	17606863	17606863	C	T	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	missense	c.1574	p.T525I	0.825	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	85	0	0	56	13	18.57	-	-	-	T	17606863	C	T	17606863	3	4	190	1	0	0	0	0	1	0	0	0	11452	507	18	4	1628	4	PADI3	1	17606863	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		17606863	231643758	1	11510										
VCAM1	0	genome.wustl.edu	37	chr1	101200206	101200206	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	acaggagacacagtactaaaAtctatagatggcgcctatac	8	9	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	101200206	101200206	A	T	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.1941	p.K647N	0.033	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	271	0	0	188	67	26.07	-	-	-	T	101200206	A	T	101200206	3	4	190	1	0	0	0	0	1	0	0	0	17234	98	4	5	1971	5	VCAM1	1	101200206	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	83593343	101200206	148050415	2	11511										
SORT1	0	genome.wustl.edu	37	chr1	109878931	109878931	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ctcaggtgcgtccaccttccTccttggtcaaaagtgatcat	8	13	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	109878931	109878931	T	C	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	silent	c.1302	p.G434	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	231	1	0.43	178	40	18.35	-	-	-	C	109878931	T	C	109878931	2	2	190	1	0	0	0	0	0	0	0	1	15024	1538	54	5		5	SORT1	1	109878931	Silent	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	8678725	109878931	139371690	3	11512										
INTS3	0	genome.wustl.edu	37	chr1	153735214	153735214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tactcccaagtcaaaattgaGgagccagtttccatggagat	9	9	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	153735214	153735214	G	A	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	silent	c.1527	p.E509	0.997	NULL	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	72	0	0	84	25	22.94	-	-	-	A	153735214	G	A	153735214	2	1	190	1	0	0	0	0	0	0	0	1	7833	991	35	4		4	INTS3	1	153735214	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	43856283	153735214	95515407	4	11513										
TRIM46	0	genome.wustl.edu	37	chr1	155150988	155150988	+	Frame_Shift_Del	DEL	C	C	-													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gattgcccgagccactgaagCcctccagacattccggccag							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	155150988	155150988	C	-	DEL	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	frame_shift_del	c.1184	p.L396fs	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	28	0	0	61	18	21.95	-	-	-	-	155150988	C	-	155150988	7	5	190	1	0	1	0	1	0	0	0	0	16617	739	26	0	1210	0	TRIM46	1	155150988	Frame_Shift_Del	DEL	C	TCGA-A8-A08F-01A-11W-A019-09	1415774	155150988	94099633	5	11514										
SPTA1	0	genome.wustl.edu	37	chr1	158624423	158624423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tattgatggaactgagcagcGttaagacatcacctttcttc	8	9	2	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	158624423	158624423	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.3014	p.T1005M	0.995	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	111	0	0	167	27	13.92	-	-	-	A	158624423	G	A	158624423	3	1	190	1	0	0	0	0	1	0	0	0	15207	1145	40	1	4373	1	SPTA1	1	158624423	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	3473435	158624423	90626198	6	11515										
SLAMF7	0	genome.wustl.edu	37	chr1	160722907	160722907	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgtcttcagatggaaaatccCcactcactgctcacgatgcc	7	14	4	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	160722907	160722907	C	G	SNP	SLAMF7	ENST00000359331	human	ensembl	69_37n	1	known	missense	c.844	p.P282A	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF7	HGNC	ENSG00000026751	107	0	0	113	13	10.32	-	-	-	G	160722907	C	G	160722907	3	3	190	1	0	0	0	0	1	0	0	0	14458	610	22	4	974	4	SLAMF7	1	160722907	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	2098484	160722907	88527714	7	11516										
LY9	0	genome.wustl.edu	37	chr1	160769678	160769678	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gattggtcccaaaaatgctcTtgctttcgcacgtcccaaag	8	12	1	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	160769678	160769678	T	C	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.260	p.L87P	0.001	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	99	0	0	108	21	16.15	-	-	-	C	160769678	T	C	160769678	3	2	190	1	0	0	0	0	1	0	0	0	9168	1609	56	5	266	5	LY9	1	160769678	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	46771	160769678	88480943	8	11517										
B4GALT3	0	genome.wustl.edu	37	chr1	161144898	161144899	+	Frame_Shift_Ins	INS	-	-	T													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	atgaggcacaatgatggctgINSttcgggagcggggctcacaa							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	161144898	161144899	-	T	INS	B4GALT3	ENST00000319769	human	ensembl	69_37n	-1	known	frame_shift_ins	c.374_373	p.T125fs	1.000:0.995	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT3	HGNC	ENSG00000158850	47	0	0	63	11	14.86	-	-	-	T	161144899	-	T	161144898	7	5	190	1	0	1	1	0	0	0	0	0	1276	1377	48	0	827	0	B4GALT3	1	161144898	Frame_Shift_Ins	INS	-	TCGA-A8-A08F-01A-11W-A019-09	375220	161144898	88105723	9	11518										
ALDH9A1	0	genome.wustl.edu	37	chr1	165652328	165652328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgttgatgcactccatagtaGcaatttcatcctcccgttcc	6	13	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	165652328	165652328	G	A	SNP	ALDH9A1	ENST00000354775	human	ensembl	69_37n	-1	known	missense	c.347	p.A116V	0.999	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149	192	0	0	198	67	25.19	-	-	-	A	165652328	G	A	165652328	3	1	190	1	0	0	0	0	1	0	0	0	506	971	34	4	1245	4	ALDH9A1	1	165652328	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	4507430	165652328	83598293	10	11519										
HMCN1	0	genome.wustl.edu	37	chr1	185902893	185902893	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aattcaacgatgctggagagTatcattgtatggtttctagt	10	5	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	185902893	185902893	T	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.1765	p.Y589N	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	140	0	0	217	45	17.11	-	-	-	A	185902893	T	A	185902893	3	1	190	1	0	0	0	0	1	0	0	0	7271	1638	57	5	1807	5	HMCN1	1	185902893	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	20250565	185902893	63347728	11	11520										
CFH	0	genome.wustl.edu	37	chr1	196643085	196643085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	taaaagctgtgtatacatgtAatgaggggtatgtagtccat	11	4	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	196643085	196643085	A	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.343	p.N115Y	0.579	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	209	0	0	227	37	14.02	-	-	-	T	196643085	A	T	196643085	3	4	190	1	0	0	0	0	1	0	0	0	3312	362	13	5	353	5	CFH	1	196643085	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	10740192	196643085	52607536	12	11521										
IPO9	0	genome.wustl.edu	37	chr1	201822199	201822199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ttaccacttgtgcccatatgAtctgtaacatggaggagctg	10	9	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	201822199	201822199	A	G	SNP	IPO9	ENST00000361565	human	ensembl	69_37n	1	known	missense	c.664	p.I222V	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	201	1	0.5	368	47	11.3	-	-	-	G	201822199	A	G	201822199	3	3	190	1	0	0	0	0	1	0	0	0	7853	333	12	5	686	5	IPO9	1	201822199	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	5179114	201822199	47428422	13	11522										
USH2A	0	genome.wustl.edu	37	chr1	215848460	215848460	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tatcacaggtggagagagacCttctggaggtgcttgcaatg	14	7	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	215848460	215848460	C	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.12793	p.G4265C	0.945	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	341	0	0	478	63	11.6	-	-	-	A	215848460	C	A	215848460	3	1	190	1	0	0	0	0	1	0	0	0	17133	681	24	4	2855	4	USH2A	1	215848460	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	14026261	215848460	33402161	14	11523										
LIN9	0	genome.wustl.edu	37	chr1	226474154	226474154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agtcattatcaccttcaaaaAgtggtctgtaaaacagatat	6	7	4	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	226474154	226474154	A	C	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	missense	c.452	p.L151R	0.999	pfam_DIRP	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	108	0	0	198	88	30.56	-	-	-	C	226474154	A	C	226474154	3	2	190	1	0	0	0	0	1	0	0	0	8869	72	3	5	1264	5	LIN9	1	226474154	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	10625694	226474154	22776467	15	11524										
AGT	0	genome.wustl.edu	37	chr1	230846340	230846340	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cagcgactagcaccagctggTcctgtagggccttttcatcc	10	14	1	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	230846340	230846340	T	A	SNP	AGT	ENST00000366667	human	ensembl	69_37n	-1	known	missense	c.257	p.D86V	0.009	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Angiotensngn	-	no_errors	AGT	HGNC	ENSG00000135744	49	0	0	76	15	16.3	-	-	-	A	230846340	T	A	230846340	3	1	190	1	0	0	0	0	1	0	0	0	399	1667	58	5	1216	5	AGT	1	230846340	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	4372186	230846340	18404281	16	11525										
DISC1	0	genome.wustl.edu	37	chr1	232144788	232144788	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gcactgtgctggaggtgaacAgaaagaggtctgtccttttc	13	8	1	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	232144788	232144788	A	C	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	missense	c.2300	p.Q767P	0.654	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	167	0	0	195	88	31.1	-	-	-	C	232144788	A	C	232144788	3	2	190	1	0	0	0	0	1	0	0	0	4574	188	7	5	3078	5	DISC1	1	232144788	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	1298448	232144788	17105833	17	11526										
OR2G3	0	genome.wustl.edu	37	chr1	247768952	247768952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aggcttctcagaccaccctcGtctggaggctgttctctttg	10	13	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	247768952	247768952	G	T	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.65	p.R22L	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	433	0	0	528	163	23.42	-	-	-	T	247768952	G	T	247768952	3	4	190	1	0	0	0	0	1	0	0	0	11072	1145	40	3	67	3	OR2G3	1	247768952	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	15624164	247768952	1481669	18	11527										
TRIM58	0	genome.wustl.edu	37	chr1	248039569	248039569	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agtcctcgctgcattgggatTttcttggactatgaagccgg	12	9	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	248039569	248039569	T	G	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	missense	c.1239	p.I413M	0.611	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	841	0	0	1741	275	13.58	-	-	-	G	248039569	T	G	248039569	3	3	190	1	0	0	0	0	1	0	0	0	16627	1829	64	5	1261	5	TRIM58	1	248039569	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	270617	248039569	1211052	19	11528										
OR2T10	0	genome.wustl.edu	37	chr1	248756770	248756770	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aactgcaggtagaagtacatCtgggtgccacacccaaggac	11	11	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	1	248756770	248756770	C	T	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	silent	c.300	p.Q100	0.294	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	155	0	0	298	40	11.83	-	-	-	T	248756770	C	T	248756770	2	4	190	1	0	0	0	0	0	0	0	1	11090	912	32	2		2	OR2T10	1	248756770	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	717201	248756770	493851	20	11529										
ADCY3	0	genome.wustl.edu	37	chr2	25054542	25054543	+	Frame_Shift_Ins	INS	-	-	TA													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cctcttacccggggaaagatINSggcagccagggagcagatgg							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	25054542	25054543	-	TA	INS	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2044_2043	p.I681fs	1.000:1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	11	0	0	4	2	33.33	-	-	-	TA	25054543	-	TA	25054542	7	5	190	1	0	1	1	0	0	0	0	0	295	1464	51	0	1434	0	ADCY3	2	25054542	Frame_Shift_Ins	INS	-	TCGA-A8-A08F-01A-11W-A019-09		25054542	218144831	21	11530										
ASXL2	0	genome.wustl.edu	37	chr2	25967090	25967090	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tcctctagcagtctgcccttCaccaccctctcctggacctt	5	19	4	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	25967090	25967090	C	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	nonsense	c.2116	p.E706*	0.843	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	129	0	0	135	38	21.97	-	-	-	A	25967090	C	A	25967090	4	1	190	1	0	0	0	0	0	1	0	0	1071	835	29	2	2195	2	ASXL2	2	25967090	Nonsense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	912548	25967090	217232283	22	11531										
REL	0	genome.wustl.edu	37	chr2	61145426	61145426	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ctactttgtgacaaagttcaGaaaggtatttatttatttca	6	5	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	61145426	61145426	G	A	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	silent	c.636	p.Q212	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NF_Rel_dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	198	0	0	239	55	18.71	-	-	-	A	61145426	G	A	61145426	2	1	190	1	0	0	0	0	0	0	0	1	13298	933	33	2		2	REL	2	61145426	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	35178336	61145426	182053947	23	11532										
APLF	0	genome.wustl.edu	37	chr2	68740326	68740326	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ctggaaggaagcacagaaatAgccaagacccagatgactcc	10	11	0	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	68740326	68740326	A	T	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	silent	c.456	p.I152	0.002	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	118	0	0	160	36	18.37	-	-	-	T	68740326	A	T	68740326	2	4	190	1	0	0	0	0	0	0	0	1	777	410	15	5		5	APLF	2	68740326	Silent	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	7594900	68740326	174459047	24	11533										
ADD2	0	genome.wustl.edu	37	chr2	70906010	70906010	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tcaaacacgaaggctgtgacCgtggctggaatctccacctc	10	13	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	70906010	70906010	C	T	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	silent	c.1209	p.T403	0.010	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	244	0	0	232	62	21.02	-	-	-	T	70906010	C	T	70906010	2	4	190	1	0	0	0	0	0	0	0	1	305	639	23	1		1	ADD2	2	70906010	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	2165684	70906010	172293363	25	11534										
RGPD2	0	genome.wustl.edu	37	chr2	88082418	88082418	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ttatcataattctgtaaaatCtttatatcaccaatgcccct	2	10	4	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	88082418	88082418	C	A	SNP	RGPD2	ENST00000398146	human	ensembl	69_37n	-1	known	missense	c.4125	p.K1375N	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304	655	0	0	486	107	18.04	-	-	-	A	88082418	C	A	88082418	3	1	190	1	0	0	0	0	1	0	0	0	13369	912	32	2	6524	2	RGPD2	2	88082418	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	17176408	88082418	155116955	26	11535										
TTN	0	genome.wustl.edu	37	chr2	179396767	179396767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agccggttgtggacgtgaccGgatcagctcagacactggcc	14	12	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	179396767	179396767	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.96871	p.R32291W	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	163	0	0	134	34	20	-	-	-	A	179396767	G	A	179396767	3	1	190	1	0	0	0	0	1	0	0	0	16832	1115	39	1	3424	1	TTN	2	179396767	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	91314349	179396767	63802606	27	11536										
MAP2	0	genome.wustl.edu	37	chr2	210559236	210559236	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tactggagaagaaagtactcAagcggagatatcatgtgagt	12	5	2	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	210559236	210559236	A	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.2342	p.Q781L	0.968	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	332	0	0	236	48	16.78	-	-	-	T	210559236	A	T	210559236	3	4	190	1	0	0	0	0	1	0	0	0	9306	130	5	5	2356	5	MAP2	2	210559236	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	31162469	210559236	32640137	28	11537										
CPS1	0	genome.wustl.edu	37	chr2	211525277	211525277	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aagactcttggggttgacttCattgatgtggccaccaaggt	12	8	2	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	211525277	211525277	C	A	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.3843	p.F1281L	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	652	1	0.15	475	127	20.92	-	-	-	A	211525277	C	A	211525277	3	1	190	1	0	0	0	0	1	0	0	0	3853	825	29	2	3973	2	CPS1	2	211525277	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	966041	211525277	31674096	29	11538										
ASB18	0	genome.wustl.edu	37	chr2	237150049	237150049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cagatggtcgaggtcccctgCgaccagggcagtgtggtact	15	11	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	2	237150049	237150049	C	T	SNP	ASB18	ENST00000330842	human	ensembl	69_37n	-1	known	missense	c.115	p.A39T	0.012	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB18	HGNC	ENSG00000182177	62	0	0	22	14	38.89	-	-	-	T	237150049	C	T	237150049	3	4	190	1	0	0	0	0	1	0	0	0	1026	783	27	1		1	ASB18	2	237150049	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	25624772	237150049	6049324	30	11539										
FGD5	0	genome.wustl.edu	37	chr3	14861793	14861793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tccctacagggtggagcggcCgagggtcccgcagcccctga	15	15	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	14861793	14861793	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.1215	p.A405	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	18	0	0	36	20	35.71	-	-	-	T	14861793	C	T	14861793	2	4	190	1	0	0	0	0	0	0	0	1	5882	639	23	1		1	FGD5	3	14861793	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		14861793	183160637	31	11540										
SCN10A	0	genome.wustl.edu	37	chr3	38753808	38753808	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aactctccatcggtatagttGatgcacctccaaaacttccc	5	14	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	38753808	38753808	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	silent	c.3933	p.I1311	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	192	0	0	150	88	36.82	-	-	-	A	38753808	G	A	38753808	2	1	190	1	0	0	0	0	0	0	0	1	14000	1280	45	2		2	SCN10A	3	38753808	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	23892015	38753808	159268622	32	11541										
ALS2CL	0	genome.wustl.edu	37	chr3	46716125	46716125	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agttggcaatgccctggctgTagaagctgtcctcccgctca	11	13	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	46716125	46716125	T	C	SNP	ALS2CL	ENST00000318962	human	ensembl	69_37n	-1	known	missense	c.2360	p.Y787C	1.000	NULL	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038	58	0	0	74	17	18.48	-	-	-	C	46716125	T	C	46716125	3	2	190	1	0	0	0	0	1	0	0	0	551	1638	57	5	525	5	ALS2CL	3	46716125	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	7962317	46716125	151306305	33	11542										
NBEAL2	0	genome.wustl.edu	37	chr3	47041682	47041682	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgggcctggaacggtctagtGtaggatcaggcaacactgct	14	9	2	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	47041682	47041682	G	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.4093	p.V1365L	0.035	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	18	0	0	10	6	37.5	-	-	-	C	47041682	G	C	47041682	3	2	190	1	0	0	0	0	1	0	0	0	10261	1377	48	4	4199	4	NBEAL2	3	47041682	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	325557	47041682	150980748	34	11543										
MORC1	0	genome.wustl.edu	37	chr3	108724000	108724000	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gttcattttctcctccatagActttttcataatttttgttt	3	8	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	108724000	108724000	A	C	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.1930	p.S644A	0.004	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	392	0	0	228	120	34.38	-	-	-	C	108724000	A	C	108724000	3	2	190	1	0	0	0	0	1	0	0	0	9773	275	10	5	1064	5	MORC1	3	108724000	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	61682318	108724000	89298430	35	11544										
SAMD7	0	genome.wustl.edu	37	chr3	169644854	169644854	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ccctgggggtctcacaccacTaccctgaaagcaaaggcctg	10	15	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	169644854	169644854	T	C	SNP	SAMD7	ENST00000335556	human	ensembl	69_37n	1	known	silent	c.804	p.T268	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD7	HGNC	ENSG00000187033	201	0	0	176	107	37.81	-	-	-	C	169644854	T	C	169644854	2	2	190	1	0	0	0	0	0	0	0	1	13910	1509	53	5		5	SAMD7	3	169644854	Silent	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	60920854	169644854	28377576	36	11545										
KLHL24	0	genome.wustl.edu	37	chr3	183382765	183382765	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	actcacagttaaatatttggAtcagagttgcctctctcaat	6	9	4	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	3	183382765	183382765	A	G	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.1162	p.I388V	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	226	0	0	186	50	21.1	-	-	-	G	183382765	A	G	183382765	3	3	190	1	0	0	0	0	1	0	0	0	8432	333	12	5	1172	5	KLHL24	3	183382765	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	13737911	183382765	14639665	37	11546										
USO1	0	genome.wustl.edu	37	chr4	76731634	76731634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cgagactataatagccaccaAaactactgatgtagaaggaa	8	8	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	4	76731634	76731634	A	G	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.2552	p.K851R	0.002	pfam_Uso1_p115_C,superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	69	0	0	41	14	25.45	-	-	-	G	76731634	A	G	76731634	3	3	190	1	0	0	0	0	1	0	0	0	17136	14	1	5	2452	5	USO1	4	76731634	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09		76731634	114422642	38	11547										
KIAA0947	0	genome.wustl.edu	37	chr5	5466609	5466611	+	In_Frame_Del	DEL	AAA	AAA	-													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgttttgctacagcctacttAaagaaggtatgcttagattg							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	5466609	5466611	AAA	-	DEL	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	in_frame_del	c.6055_6057	p.K2019in_frame_del	0.993:0.998:0.997	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	80	0	0	85	32	26.67	-	-	-	-	5466611	AAA	-	5466609	7	5	190	1	0	1	0	1	0	0	0	0	8254	363	13	0	6109	0	KIAA0947	5	5466609	In_Frame_Del	DEL	AAA	TCGA-A8-A08F-01A-11W-A019-09		5466609	175448651	39	11548										
CARD6	0	genome.wustl.edu	37	chr5	40854020	40854020	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gattcacagccagcaagagcAgtagggaagccatggcctca	12	11	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	40854020	40854020	A	T	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	silent	c.2586	p.A862	0.000	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	667	0	0	961	316	24.73	-	-	-	T	40854020	A	T	40854020	2	4	190	1	0	0	0	0	0	0	0	1	2675	175	7	5		5	CARD6	5	40854020	Silent	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	35387411	40854020	140061240	40	11549										
CDC20B	0	genome.wustl.edu	37	chr5	54442678	54442678	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	atacgtagcattaactgaatCgagtacctgtttaacaacaa	6	8	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	54442678	54442678	C	G	SNP	CDC20B	ENST00000296733	human	ensembl	69_37n	-1	known	missense	c.133	p.D45H	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287	45	0	0	39	94	70.15	-	-	-	G	54442678	C	G	54442678	3	3	190	1	0	0	0	0	1	0	0	0	3089	884	31	3	1466	3	CDC20B	5	54442678	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	13588658	54442678	126472582	41	11550										
OCLN	0	genome.wustl.edu	37	chr5	68809915	68809916	+	Frame_Shift_Ins	INS	-	-	C													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aacacatttatgatgagcagINSccccccaatgtcgaggagtg							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	68809915	68809916	-	C	INS	OCLN	ENST00000355237	human	ensembl	69_37n	1	known	frame_shift_ins	c.870_871	p.N292fs	0.952:0.963	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_MARVEL-like_dom,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822	31	0	0	17	2	10.53	-	-	-	C	68809916	-	C	68809915	7	5	190	1	0	1	1	0	0	0	0	0	10893	962	34	0	880	0	OCLN	5	68809915	Frame_Shift_Ins	INS	-	TCGA-A8-A08F-01A-11W-A019-09	14367237	68809915	112105345	42	11551										
PCDHA8	0	genome.wustl.edu	37	chr5	140222344	140222344	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	acatcttcacggtgtctgcgCgagacgcggacgcgcaggag	15	12	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	140222344	140222344	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	nonsense	c.1438	p.R480*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	9	0	0	15	6	28.57	-	-	-	T	140222344	C	T	140222344	4	4	190	1	0	0	0	0	0	1	0	0	11603	760	27	1	1440	1	PCDHA8	5	140222344	Nonsense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	71412429	140222344	40692916	43	11552										
PCDHA11	0	genome.wustl.edu	37	chr5	140248908	140248908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cgtccaaaacacatggggacCttctggaggtaaatctgcag	11	10	2	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	140248908	140248908	C	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.220	p.L74I	0.993	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	47	0	0	28	16	36.36	-	-	-	A	140248908	C	A	140248908	3	1	190	1	0	0	0	0	1	0	0	0	11594	681	24	4	222	4	PCDHA11	5	140248908	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	26564	140248908	40666352	44	11553										
PCDHB11	0	genome.wustl.edu	37	chr5	140580947	140580947	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tcgacttccgcgtgggcgccAcagaccgcggctccccggct	13	18	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	140580947	140580947	A	G	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.1600	p.T534A	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	43	0	0	40	14	25.93	-	-	-	G	140580947	A	G	140580947	3	3	190	1	0	0	0	0	1	0	0	0	11609	159	6	5	1602	5	PCDHB11	5	140580947	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	332039	140580947	40334313	45	11554										
PCDHGA12	0	genome.wustl.edu	37	chr5	140812092	140812092	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agagcccggctacctggtgaCcaaggtggtggcggtggaca	17	10	0	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	140812092	140812092	C	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	missense	c.1766	p.T589N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	59	0	0	66	18	21.43	-	-	-	A	140812092	C	A	140812092	3	1	190	1	0	0	0	0	1	0	0	0	11626	507	18	4	1768	4	PCDHGA12	5	140812092	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	231145	140812092	40103168	46	11555										
FAM114A2	0	genome.wustl.edu	37	chr5	153413878	153413878	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gaggctgaggagagtatggaCttgccccagctcccccaata	12	12	0	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	153413878	153413878	C	A	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.270	p.K90N	1.000	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	194	0	0	162	34	17.35	-	-	-	A	153413878	C	A	153413878	3	1	190	1	0	0	0	0	1	0	0	0	5444	564	20	4	1295	4	FAM114A2	5	153413878	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	12601786	153413878	27501382	47	11556										
ZNF454	0	genome.wustl.edu	37	chr5	178392207	178392207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	accatcagaaaattcatactGgagagaagccttttgaatgc	8	8	2	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	5	178392207	178392207	G	A	SNP	ZNF454	ENST00000320129	human	ensembl	69_37n	1	known	missense	c.802	p.G268R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	199	0	0	388	57	12.78	-	-	-	A	178392207	G	A	178392207	3	1	190	1	0	0	0	0	1	0	0	0	18019	1349	47	4	816	4	ZNF454	5	178392207	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	24978329	178392207	2523053	48	11557										
OR12D3	0	genome.wustl.edu	37	chr6	29342676	29342676	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gggggttcatgatgacagtgTagcgaagaggattgcagatg	17	4	1	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	6	29342676	29342676	T	A	SNP	OR12D3	ENST00000377143	human	ensembl	69_37n	-1	known	missense	c.389	p.Y130F	0.981	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462	225	0	0	196	96	32.65	-	-	-	A	29342676	T	A	29342676	3	1	190	1	0	0	0	0	1	0	0	0	11005	1638	57	5	565	5	OR12D3	6	29342676	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09		29342676	141772391	49	11558										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32551998	32551998	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tggctgttccagtactcagcGtcaggccgccccagctccgt	11	16	2	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	6	32551998	32551998	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	silent	c.258	p.D86	0.001	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	9	0	0	21	26	55.32	-	-	-	A	32551998	G	A	32551998	2	1	190	1	0	0	0	0	0	0	0	1	7259	1136	40	1		1	HLA-DRB1	6	32551998	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	3209322	32551998	138563069	50	11559										
LRFN2	0	genome.wustl.edu	37	chr6	40400435	40400435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gtcctcaaaagcctcatctgCgatgccgcccagctggttgt	10	14	3	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	6	40400435	40400435	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	missense	c.418	p.A140T	0.843	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	41	0	0	36	14	28	-	-	-	T	40400435	C	T	40400435	3	4	190	1	0	0	0	0	1	0	0	0	9004	768	27	1	1959	1	LRFN2	6	40400435	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	7848437	40400435	130714632	51	11560										
ELN	0	genome.wustl.edu	37	chr7	73457331	73457331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	caggcgctgggcttggtggtGtcccaggagttggtggctta	18	8	0	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	7	73457331	73457331	G	A	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.343	p.V115I	0.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	18	0	0	38	9	19.15	-	-	-	A	73457331	G	A	73457331	3	1	190	1	0	0	0	0	1	0	0	0	5108	1377	48	4	369	4	ELN	7	73457331	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09		73457331	85681332	52	11561										
CCDC146	0	genome.wustl.edu	37	chr7	76866317	76866317	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	atggcagcgttaaaagccaaGtataccttgctgcatgacgc	10	10	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	7	76866317	76866317	G	C	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	missense	c.210	p.K70N	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	178	0	0	208	26	11.06	-	-	-	C	76866317	G	C	76866317	3	2	190	1	0	0	0	0	1	0	0	0	2805	1020	36	4	216	4	CCDC146	7	76866317	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	3408986	76866317	82272346	53	11562										
SAMD9L	0	genome.wustl.edu	37	chr7	92763853	92763853	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aatcttctcccacatgttagTtgtcttgtcttcatattgat	5	9	5	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	7	92763853	92763853	T	C	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.1432	p.T478A	0.000	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	688	1	0.15	372	106	22.13	-	-	-	C	92763853	T	C	92763853	3	2	190	1	0	0	0	0	1	0	0	0	13913	1725	60	5	3326	5	SAMD9L	7	92763853	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	15897536	92763853	66374810	54	11563										
SERPINE1	0	genome.wustl.edu	37	chr7	100773837	100773837	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ccagggcttcatgccccactTcttcaggctgttccggagca	10	15	3	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	7	100773837	100773837	T	C	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	missense	c.407	p.F136S	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	324	0	0	288	84	22.46	-	-	-	C	100773837	T	C	100773837	3	2	190	1	0	0	0	0	1	0	0	0	14199	1783	62	5	413	5	SERPINE1	7	100773837	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	8009984	100773837	58364826	55	11564										
THAP1	0	genome.wustl.edu	37	chr8	42693459	42693459	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ggtgggggaagctgttcctgTggctccagaagatcttcttt	14	8	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	8	42693459	42693459	T	C	SNP	THAP1	ENST00000345117	human	ensembl	69_37n	-1	known	missense	c.92	p.H31R	0.005	NULL	NULL	-	no_errors	THAP1	HGNC	ENSG00000131931	70	0	0	90	18	16.67	-	-	-	C	42693459	T	C	42693459	3	2	190	1	0	0	0	0	1	0	0	0	15936	1696	59	5	357	5	THAP1	8	42693459	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09		42693459	103670563	56	11565										
NECAB1	0	genome.wustl.edu	37	chr8	91929817	91929817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tctccagaattccctggaatGtgccatggaaactactgagg	10	10	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	8	91929817	91929817	G	A	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	missense	c.455	p.C152Y	1.000	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	169	0	0	196	28	12.5	-	-	-	A	91929817	G	A	91929817	3	1	190	1	0	0	0	0	1	0	0	0	10376	1377	48	4	477	4	NECAB1	8	91929817	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	49236358	91929817	54434205	57	11566										
FZD6	0	genome.wustl.edu	37	chr8	104337129	104337129	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gcctgcaataaggcagatgaGaagctagaacttggtgacac	12	8	0	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	8	104337129	104337129	G	C	SNP	FZD6	ENST00000358755	human	ensembl	69_37n	1	known	missense	c.795	p.E265D	0.991	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930	212	0	0	378	50	11.68	-	-	-	C	104337129	G	C	104337129	3	2	190	1	0	0	0	0	1	0	0	0	6183	933	33	2	805	2	FZD6	8	104337129	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	12407312	104337129	42026893	58	11567										
TG	0	genome.wustl.edu	37	chr8	133919044	133919044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gcagcagtgccaattgctgtGccgccagggctcctggagcg	15	13	0	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	8	133919044	133919044	G	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.3746	p.C1249F	0.255	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	38	0	0	72	11	12.94	-	-	-	T	133919044	G	T	133919044	3	4	190	1	0	0	0	0	1	0	0	0	15908	1319	46	4	3812	4	TG	8	133919044	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	29581915	133919044	12444978	59	11568										
KIAA1432	0	genome.wustl.edu	37	chr9	5763843	5763843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ggctcaggatttggacacagCtgcctcttaccttattatct	8	11	3	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	9	5763843	5763843	C	T	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.2579	p.A860V	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	475	0	0	360	81	18.33	-	-	-	T	5763843	C	T	5763843	3	4	190	1	0	0	0	0	1	0	0	0	8285	797	28	4	2649	4	KIAA1432	9	5763843	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		5763843	135449588	60	11569										
FREM1	0	genome.wustl.edu	37	chr9	14769772	14769772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tccatgatttgaaattccacGgtatctgaatttacttccaa	5	9	1	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	9	14769772	14769772	G	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.5157	p.T1719	0.001	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	73	0	0	39	17	29.82	-	-	-	A	14769772	G	A	14769772	2	1	190	1	0	0	0	0	0	0	0	1	6093	1103	39	1		1	FREM1	9	14769772	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	9005929	14769772	126443659	61	11570										
CNTNAP3	0	genome.wustl.edu	37	chr9	39100104	39100104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	accccgttcaactgcagagaCcgaatgcatcctagaaagcc	8	14	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	9	39100104	39100104	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	silent	c.2799	p.R933	0.246	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	90	0	0	93	22	19.13	-	-	-	T	39100104	C	T	39100104	2	4	190	1	0	0	0	0	0	0	0	1	3678	494	18	4		4	CNTNAP3	9	39100104	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	24330332	39100104	102113327	62	11571										
ZMYND19	0	genome.wustl.edu	37	chr9	140477613	140477613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	caagccaatacaagctttgcTcccttaaagaaagaagcaga	7	10	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	9	140477613	140477613	T	C	SNP	ZMYND19	ENST00000298585	human	ensembl	69_37n	-1	known	missense	c.362	p.E121G	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724	25	0	0	13	9	40.91	-	-	-	C	140477613	T	C	140477613	3	2	190	1	0	0	0	0	1	0	0	0	17806	1551	54	5	329	5	ZMYND19	9	140477613	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	101377509	140477613	735818	63	11572										
HNRNPF	0	genome.wustl.edu	37	chr10	43882166	43882166	+	Frame_Shift_Del	DEL	G	G	-													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gactggctctccaggccactGtaagtggcctgggcagcaga							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	43882166	43882166	G	-	DEL	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	frame_shift_del	c.1167	p.Y389fs	0.995	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	24	0	0	38	11	22	-	-	-	-	43882166	G	-	43882166	7	5	190	1	0	1	0	1	0	0	0	0	7316	1372	48	0	84	0	HNRNPF	10	43882166	Frame_Shift_Del	DEL	G	TCGA-A8-A08F-01A-11W-A019-09		43882166	91652581	64	11573										
ERCC6	0	genome.wustl.edu	37	chr10	50679156	50679156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tctatttgtcaaaaactgctTgaagatttgtctaaaaaaat	5	5	3	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	50679156	50679156	T	C	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2935	p.K979E	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	566	0	0	378	106	21.9	-	-	-	C	50679156	T	C	50679156	3	2	190	1	0	0	0	0	1	0	0	0	5254	1821	63	5	1566	5	ERCC6	10	50679156	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	6796990	50679156	84855591	65	11574										
SAMD8	0	genome.wustl.edu	37	chr10	76928307	76928307	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gatctgttacaggtcaatacTtctgcgaaggctctgtagtc	10	9	4	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	76928307	76928307	T	G	SNP	SAMD8	ENST00000372690	human	ensembl	69_37n	1	known	missense	c.872	p.L291R	1.000	NULL	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671	333	0	0	297	77	20.53	-	-	-	G	76928307	T	G	76928307	3	3	190	1	0	0	0	0	1	0	0	0	13911	1609	56	5	693	5	SAMD8	10	76928307	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	26249151	76928307	58606440	66	11575										
NRG3	0	genome.wustl.edu	37	chr10	84744963	84744963	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tggagcaaaaggacctggtgGgctattcatccacaagggcc	13	10	1	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	84744963	84744963	G	C	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	missense	c.1765	p.G589R	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	454	0	0	217	84	27.91	-	-	-	C	84744963	G	C	84744963	3	2	190	1	0	0	0	0	1	0	0	0	10722	1232	43	4	1971	4	NRG3	10	84744963	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	7816656	84744963	50789784	67	11576										
LRIT1	0	genome.wustl.edu	37	chr10	85992189	85992189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gaggacactgaaggcagttgTgttcttagcctggggtgcct	15	8	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	85992189	85992189	T	C	SNP	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	missense	c.1366	p.T456A	0.800	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	32	0	0	18	7	28	-	-	-	C	85992189	T	C	85992189	3	2	190	1	0	0	0	0	1	0	0	0	9013	1696	59	5	509	5	LRIT1	10	85992189	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	1247226	85992189	49542558	68	11577										
FBXW4	0	genome.wustl.edu	37	chr10	103427732	103427732	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agccggcctgaggccaaaggCcacacctagaaacaggagag	13	12	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	103427732	103427732	C	T	SNP	FBXW4	ENST00000331272	human	ensembl	69_37n	-1	known	nonsense	c.681	p.W227*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829	165	0	0	82	47	36.43	-	-	-	T	103427732	C	T	103427732	4	4	190	1	0	0	0	0	0	1	0	0	5813	740	26	4	577	4	FBXW4	10	103427732	Nonsense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	17435543	103427732	32107015	69	11578										
PTPRE	0	genome.wustl.edu	37	chr10	129871639	129871639	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tatttcatcgccacccagggGccactggcacacacggttga	10	14	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	129871639	129871639	G	A	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	silent	c.1503	p.G501	0.774	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	66	0	0	61	22	26.51	-	-	-	A	129871639	G	A	129871639	2	1	190	1	0	0	0	0	0	0	0	1	12883	1190	42	4		4	PTPRE	10	129871639	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	26443907	129871639	5663108	70	11579										
MTG1	0	genome.wustl.edu	37	chr10	135215097	135215097	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gtgatgtccaaaattcaggtGgagtcctcaggggccaggcc	14	10	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	10	135215097	135215097	G	T	SNP	MTG1	ENST00000460848	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.451	-	-	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	14	0	0	13	5	27.78	-	-	-	T	135215097	G	T	135215097	1	4	190	0	1	0	0	0	0	0	0	0	9998	1363	47	4		4	MTG1	10	135215097	RNA	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	5343458	135215097	319650	71	11580										
OR10A2	0	genome.wustl.edu	37	chr11	6891464	6891464	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tccattctgtggcaccaacaAggtgaaccacttcttctgtg	8	12	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	6891464	6891464	A	C	SNP	OR10A2	ENST00000307322	human	ensembl	69_37n	1	known	missense	c.479	p.K160T	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790	322	0	0	220	71	24.4	-	-	-	C	6891464	A	C	6891464	3	2	190	1	0	0	0	0	1	0	0	0	10963	72	3	5	481	5	OR10A2	11	6891464	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09		6891464	128115052	72	11581										
NLRP10	0	genome.wustl.edu	37	chr11	7982712	7982712	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aatagagcctccaccgtgacAgactccagctcctgctccgg	9	16	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	7982712	7982712	A	T	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	silent	c.447	p.S149	0.032	NULL	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	117	0	0	51	22	30.14	-	-	-	T	7982712	A	T	7982712	2	4	190	1	0	0	0	0	0	0	0	1	10544	175	7	5		5	NLRP10	11	7982712	Silent	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	1091248	7982712	127023804	73	11582										
TMEM132A	0	genome.wustl.edu	37	chr11	60697989	60697989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ctctcttccccaggatcaagGtgaagaaggggctgcatgtg	13	10	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	60697989	60697989	G	A	SNP	TMEM132A	ENST00000005286	human	ensembl	69_37n	1	known	missense	c.874	p.V292M	1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	59	0	0	31	14	31.11	-	-	-	A	60697989	G	A	60697989	3	1	190	1	0	0	0	0	1	0	0	0	16140	1261	44	4	892	4	TMEM132A	11	60697989	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	52715277	60697989	74308527	74	11583										
BEST1	0	genome.wustl.edu	37	chr11	61729922	61729922	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cccaaaaaccacaaggcagcCaaacagaacgttaggggcca	9	13	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	61729922	61729922	C	A	SNP	BEST1	ENST00000449131	human	ensembl	69_37n	1	known	silent	c.1116	p.A372	0.002	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	46	0	0	71	12	14.29	-	-	-	A	61729922	C	A	61729922	2	1	190	1	0	0	0	0	0	0	0	1	1408	581	21	4		4	BEST1	11	61729922	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	1031933	61729922	73276594	75	11584										
NRXN2	0	genome.wustl.edu	37	chr11	64417968	64417968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ggagtgctgcgtgacagtgcGggagtcaatcttgagcgtgt	17	7	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	64417968	64417968	G	C	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.3061	p.R1021G	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	76	0	0	95	17	15.18	-	-	-	C	64417968	G	C	64417968	3	2	190	1	0	0	0	0	1	0	0	0	10739	1116	39	3	2382	3	NRXN2	11	64417968	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	2688046	64417968	70588548	76	11585										
DRD2	0	genome.wustl.edu	37	chr11	113295308	113295308	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gccttcccgtctgacccgttGaagggccggctccagttctg	12	15	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	11	113295308	113295308	G	T	SNP	DRD2	ENST00000355319	human	ensembl	69_37n	-1	known	missense	c.66	p.F22L	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	49	0	0	24	11	31.43	-	-	-	T	113295308	G	T	113295308	3	4	190	1	0	0	0	0	1	0	0	0	4792	1281	45	2	1293	2	DRD2	11	113295308	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	48877340	113295308	21711208	77	11586										
VWF	0	genome.wustl.edu	37	chr12	6125930	6125930	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gctcacccacctatattggcTtttgaaatgaaagccttggc	8	11	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	12	6125930	6125930	T	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.5160	p.K1720N	0.061	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	225	0	0	127	55	30.22	-	-	-	A	6125930	T	A	6125930	3	1	190	1	0	0	0	0	1	0	0	0	17343	1606	56	5	3377	5	VWF	12	6125930	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09		6125930	127725965	78	11587										
C12orf71	0	genome.wustl.edu	37	chr12	27234161	27234161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ggttgaattctcttgcctctGtgaaagagtcttttcgttgg	11	7	3	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	12	27234161	27234161	G	C	SNP	C12orf71	ENST00000429849	human	ensembl	69_37n	-1	known	missense	c.756	p.H252Q	0.008	NULL	NULL	-	no_errors	C12orf71	HGNC	ENSG00000214700	335	1	0.3	348	79	18.46	-	-	-	C	27234161	G	C	27234161	3	2	190	1	0	0	0	0	1	0	0	0	1724	1368	48	4	57	4	C12orf71	12	27234161	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	21108231	27234161	106617734	79	11588										
OVCH1	0	genome.wustl.edu	37	chr12	29629184	29629184	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	accgtaaatcacaacagcatCataaatacagtttggactaa	5	9	2	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	12	29629184	29629184	C	G	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	missense	c.1426	p.D476H	0.203	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	498	0	0	409	64	13.53	-	-	-	G	29629184	C	G	29629184	3	3	190	1	0	0	0	0	1	0	0	0	11396	826	29	2	2042	2	OVCH1	12	29629184	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	2395023	29629184	104222711	80	11589										
OR6C6	0	genome.wustl.edu	37	chr12	55688554	55688554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tcccatgaccaatgggggaaAtatgattaagaatccagtta	9	7	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	12	55688554	55688554	A	T	SNP	OR6C6	ENST00000358433	human	ensembl	69_37n	-1	known	missense	c.463	p.F155I	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C6	HGNC	ENSG00000188324	293	0	0	268	62	18.56	-	-	-	T	55688554	A	T	55688554	3	4	190	1	0	0	0	0	1	0	0	0	11267	101	4	5	483	5	OR6C6	12	55688554	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	26059370	55688554	78163341	81	11590										
DNAJC14	0	genome.wustl.edu	37	chr12	56221251	56221251	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gacccaaggcaactccagccAgccccactgaactattctta	6	16	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	12	56221251	56221251	A	G	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	missense	c.1192	p.W398R	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	167	0	0	368	58	13.58	-	-	-	G	56221251	A	G	56221251	3	3	190	1	0	0	0	0	1	0	0	0	4668	188	7	5	940	5	DNAJC14	12	56221251	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	532697	56221251	77630644	82	11591										
FLT3	0	genome.wustl.edu	37	chr13	28578204	28578204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ttcctctacgaatcttcgacCtgagcctgcggagagagtag	11	11	2	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	13	28578204	28578204	C	A	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	missense	c.2976	p.Q992H	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	148	0	0	184	41	18.22	-	-	-	A	28578204	C	A	28578204	3	1	190	1	0	0	0	0	1	0	0	0	5988	680	24	4	18	4	FLT3	13	28578204	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		28578204	86591674	83	11592										
NYNRIN	0	genome.wustl.edu	37	chr14	24877941	24877941	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cagcagccaggactccacgaAccacacacaagccttgttga	8	15	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	14	24877941	24877941	A	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.941	p.N314I	0.002	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	19	0	0	39	10	19.61	-	-	-	T	24877941	A	T	24877941	3	4	190	1	0	0	0	0	1	0	0	0	10869	43	2	5	951	5	NYNRIN	14	24877941	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09		24877941	82471599	84	11593										
NRXN3	0	genome.wustl.edu	37	chr14	79111656	79111656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aaggatggtgcggtctccttGgtcattaacctggggtccgg	15	9	2	0			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	14	79111656	79111656	G	T	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.945	p.L315F	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	101	0	0	83	22	20.95	-	-	-	T	79111656	G	T	79111656	3	4	190	1	0	0	0	0	1	0	0	0	10740	1363	47	4		4	NRXN3	14	79111656	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	54233715	79111656	28237884	85	11594										
C15orf63	0	genome.wustl.edu	37	chr15	44093968	44093968	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agtttgcgggaacacatgggCaacgtggtagaggcgcttat	15	7	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	44093968	44093968	C	A	SNP	C15orf63	ENST00000406925	human	ensembl	69_37n	1	known	silent	c.354	p.G118	1.000	NULL	NULL	-	no_errors	C15orf63	HGNC	ENSG00000242028	110	0	0	192	52	21.31	-	-	-	A	44093968	C	A	44093968	2	1	190	1	0	0	0	0	0	0	0	1	1822	697	25	4		4	C15orf63	15	44093968	Silent	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		44093968	58437424	86	11595										
FBN1	0	genome.wustl.edu	37	chr15	48729188	48729188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	attccctgctagaatataacCaaagggacactcgcagcgat	8	11	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	48729188	48729188	C	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.6466	p.G2156C	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	301	0	0	169	128	42.81	-	-	-	A	48729188	C	A	48729188	3	1	190	1	0	0	0	0	1	0	0	0	5748	594	21	4	2205	4	FBN1	15	48729188	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	4635220	48729188	53802204	87	11596										
CEP152	0	genome.wustl.edu	37	chr15	49054845	49054845	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agactgccactccttttcaaGctgttgaatgagtttttctt	7	9	2	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	49054845	49054845	G	C	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.2305	p.L769V	0.998	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	188	0	0	168	46	21.3	-	-	-	C	49054845	G	C	49054845	3	2	190	1	0	0	0	0	1	0	0	0	3277	971	34	4	2695	4	CEP152	15	49054845	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	325657	49054845	53476547	88	11597										
ZNF280D	0	genome.wustl.edu	37	chr15	56959161	56959161	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gaagctcctgattgcagaggTccaactgaagctcgaatagt	11	9	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	56959161	56959161	T	A	SNP	ZNF280D	ENST00000267807	human	ensembl	69_37n	-1	known	silent	c.1569	p.G523	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871	145	0	0	105	30	22.22	-	-	-	A	56959161	T	A	56959161	2	1	190	1	0	0	0	0	0	0	0	1	17913	1654	58	5		5	ZNF280D	15	56959161	Silent	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	7904316	56959161	45572231	89	11598										
CGNL1	0	genome.wustl.edu	37	chr15	57730935	57730935	+	Frame_Shift_Del	DEL	A	A	-													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgcaccaaggagagggtgggAgaggaggcccttttcactag							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	57730935	57730935	A	-	DEL	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	frame_shift_del	c.738	p.E247fs	0.000	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	243	0	0	202	34	14.29	-	-	-	-	57730935	A	-	57730935	7	5	190	1	0	1	0	1	0	0	0	0	3333	291	11	0	740	0	CGNL1	15	57730935	Frame_Shift_Del	DEL	A	TCGA-A8-A08F-01A-11W-A019-09	771774	57730935	44800457	90	11599										
TPM1	0	genome.wustl.edu	37	chr15	63351850	63351850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgaaagaggccaagcacattGctgaagatgccgaccgcaaa	11	10	0	4			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	63351850	63351850	G	C	SNP	TPM1	ENST00000267996	human	ensembl	69_37n	1	known	missense	c.463	p.A155P	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416	100	0	0	100	79	44.13	-	-	-	C	63351850	G	C	63351850	3	2	190	1	0	0	0	0	1	0	0	0	16501	1319	46	4	743	4	TPM1	15	63351850	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	5620915	63351850	39179542	91	11600										
SV2B	0	genome.wustl.edu	37	chr15	91809865	91809865	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gaattcattgagatccaaagTtcaacaggaacctggtacca	8	9	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	15	91809865	91809865	T	A	SNP	SV2B	ENST00000330276	human	ensembl	69_37n	1	known	missense	c.1062	p.S354R	0.892	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2B	HGNC	ENSG00000185518	118	0	0	124	44	26.19	-	-	-	A	91809865	T	A	91809865	3	1	190	1	0	0	0	0	1	0	0	0	15509	1722	60	5	1084	5	SV2B	15	91809865	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	28458015	91809865	10721527	92	11601										
ZSCAN10	0	genome.wustl.edu	37	chr16	3142213	3142213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	actgaaggctcttccgcaggCaattccttcttggggctgtg	12	11	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	16	3142213	3142213	C	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	69_37n	-1	known	missense	c.336	p.L112F	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182	17	0	0	22	13	37.14	-	-	-	A	3142213	C	A	3142213	3	1	190	1	0	0	0	0	1	0	0	0	18320	709	25	4	1857	4	ZSCAN10	16	3142213	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		3142213	87212540	93	11602										
SNX29	0	genome.wustl.edu	37	chr16	12172727	12172727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	caggccacggaagtcctctgAgcagcctgttaccttctgcc	10	15	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	16	12172727	12172727	A	C	SNP	SNX29	ENST00000306030	human	ensembl	69_37n	1	known	missense	c.202	p.S68R	0.998	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471	27	0	0	26	9	25.71	-	-	-	C	12172727	A	C	12172727	3	2	190	1	0	0	0	0	1	0	0	0	14987	304	11	5	212	5	SNX29	16	12172727	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	9030514	12172727	78182026	94	11603										
PNPO	0	genome.wustl.edu	37	chr17	46022006	46022006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ggaaaaccctctgctcgcatGttgctgctgaagggcttcgg	13	11	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	17	46022006	46022006	G	T	SNP	PNPO	ENST00000225573	human	ensembl	69_37n	1	known	missense	c.288	p.M96I	1.000	pfam_Pyridox_Oxase_FMN-bd,superfamily_Split_barrel_FMN-bd-related,tigrfam_Pyridox_Oxase	pfam_Pyridox_Oxase_FMN-bd,pfam_Pyridoxamine_oxidase_dimer_C,superfamily_Split_barrel_FMN-bd-related,tigrfam_Pyridox_Oxase	-	no_errors	PNPO	HGNC	ENSG00000108439	141	0	0	333	77	18.73	-	-	-	T	46022006	G	T	46022006	3	4	190	1	0	0	0	0	1	0	0	0	12246	1377	48	4	298	4	PNPO	17	46022006	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09		46022006	35173204	95	11604										
PPM1D	0	genome.wustl.edu	37	chr17	58734121	58734121	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aatgaagatgagttatacctGaacctgactgacagcccttc	8	10	0	6			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	17	58734121	58734121	G	C	SNP	PPM1D	ENST00000305921	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	0.990	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1D	HGNC	ENSG00000170836	173	0	0	362	62	14.62	-	-	-	C	58734121	G	C	58734121	2	2	190	1	0	0	0	0	0	0	0	1	12414	1277	45	2		2	PPM1D	17	58734121	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	12712115	58734121	22461089	96	11605										
COG1	0	genome.wustl.edu	37	chr17	71201755	71201755	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgctttatgatctgcgttacCtcaacattgttctgacagcc	7	11	3	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	17	71201755	71201755	C	A	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.2446	p.L816I	1.000	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	77	0	0	224	26	10.4	-	-	-	A	71201755	C	A	71201755	3	1	190	1	0	0	0	0	1	0	0	0	3687	681	24	4	2484	4	COG1	17	71201755	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09	12467634	71201755	9993455	97	11606										
LAMA3	0	genome.wustl.edu	37	chr18	21364028	21364028	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gtgttctccctgaaatatgtGatgcccacggacggtgcctg	12	11	1	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	18	21364028	21364028	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.1510	p.D504N	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	253	0	0	228	70	23.41	-	-	-	A	21364028	G	A	21364028	3	1	190	1	0	0	0	0	1	0	0	0	8661	1290	45	2	1556	2	LAMA3	18	21364028	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09		21364028	56713220	98	11607										
ALPK2	0	genome.wustl.edu	37	chr18	56182234	56182234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aacacacttactcaggtactTctccaaagccttccagaggc	6	14	2	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	18	56182234	56182234	T	C	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.6020	p.E2007G	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	105	0	0	65	24	26.67	-	-	-	C	56182234	T	C	56182234	3	2	190	1	0	0	0	0	1	0	0	0	545	1783	62	5	508	5	ALPK2	18	56182234	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09	34818206	56182234	21895014	99	11608										
CDH20	0	genome.wustl.edu	37	chr18	59195238	59195238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aagaaaagctacaccttaaaGgtggagggagccaatcctca	10	9	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	18	59195238	59195238	G	T	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.1056	p.K352N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	289	0	0	192	68	26.05	-	-	-	T	59195238	G	T	59195238	3	4	190	1	0	0	0	0	1	0	0	0	3135	991	35	4	1078	4	CDH20	18	59195238	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	3013004	59195238	18882010	100	11609										
EMR3	0	genome.wustl.edu	37	chr19	14749046	14749046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tgcttgagtagttgaccactGtcaggttccgtgcagtgagg	14	8	1	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	14749046	14749046	G	A	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.1355	p.T452I	0.295	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	152	0	0	127	15	10.56	-	-	-	A	14749046	G	A	14749046	3	1	190	1	0	0	0	0	1	0	0	0	5143	1377	48	4	627	4	EMR3	19	14749046	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09		14749046	44379937	101	11610										
RYR1	0	genome.wustl.edu	37	chr19	38964046	38964047	+	Frame_Shift_Ins	INS	-	-	C													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tggacggcactgtggacacgINScccccctgcctgcgcctgac							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	38964046	38964047	-	C	INS	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	frame_shift_ins	c.3795_3796	p.C1267fs	0.968:1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	36	0	0	25	3	10.71	-	-	-	C	38964047	-	C	38964046	7	5	190	1	0	1	1	0	0	0	0	0	13854	1074	38	0	3905	0	RYR1	19	38964046	Frame_Shift_Ins	INS	-	TCGA-A8-A08F-01A-11W-A019-09	24215000	38964046	20164937	102	11611										
SIGLEC11	0	genome.wustl.edu	37	chr19	50463606	50463606	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	tcttgaaagcccagttaaacAcacagatgaccgtcaccggc	8	13	2	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	50463606	50463606	A	C	SNP	SIGLEC11	ENST00000447370	human	ensembl	69_37n	-1	known	missense	c.533	p.V178G	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC11	HGNC	ENSG00000161640	39	0	0	37	14	27.45	-	-	-	C	50463606	A	C	50463606	3	2	190	1	0	0	0	0	1	0	0	0	14396	159	6	5	1599	5	SIGLEC11	19	50463606	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	11499560	50463606	8665377	103	11612										
KLK3	0	genome.wustl.edu	37	chr19	51361847	51361847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gacagggggcaaaagcacctGctcggtgagtcatccctact	12	12	1	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	51361847	51361847	G	A	SNP	KLK3	ENST00000326003	human	ensembl	69_37n	1	known	missense	c.626	p.C209Y	0.170	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK3	HGNC	ENSG00000142515	112	0	0	89	30	25.21	-	-	-	A	51361847	G	A	51361847	3	1	190	1	0	0	0	0	1	0	0	0	8458	1319	46	4	644	4	KLK3	19	51361847	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	898241	51361847	7767136	104	11613										
ZNF534	0	genome.wustl.edu	37	chr19	52942384	52942384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agttgtaatgaatgtggcaaGgtcttcagtcggaattcaca	11	6	3	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	52942384	52942384	G	T	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.1710	p.K570N	0.248	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	64	0	0	109	19	14.84	-	-	-	T	52942384	G	T	52942384	3	4	190	1	0	0	0	0	1	0	0	0	18069	991	35	4	1724	4	ZNF534	19	52942384	Missense_Mutation	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	1580537	52942384	6186599	105	11614										
ZNF470	0	genome.wustl.edu	37	chr19	57089279	57089279	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	aaagctttccggcagagcacGcatctggctcatcatcagag	10	12	4	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	19	57089279	57089279	G	A	SNP	ZNF470	ENST00000330619	human	ensembl	69_37n	1	known	silent	c.1482	p.T494	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	82	0	0	189	35	15.56	-	-	-	A	57089279	G	A	57089279	2	1	190	1	0	0	0	0	0	0	0	1	18025	1074	38	1		1	ZNF470	19	57089279	Silent	SNP	G	TCGA-A8-A08F-01A-11W-A019-09	4146895	57089279	2039704	106	11615										
PXMP4	0	genome.wustl.edu	37	chr20	32302531	32302531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	gcgcgtgaggggcccggattTtggctccatagctgtagaaa	15	9	0	2			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	20	32302531	32302531	T	C	SNP	PXMP4	ENST00000409299	human	ensembl	69_37n	-1	known	missense	c.125	p.K42R	1.000	pirsf_Pmp4	pirsf_Pmp4	-	no_errors	PXMP4	HGNC	ENSG00000101417	69	0	0	254	46	15.28	-	-	-	C	32302531	T	C	32302531	3	2	190	1	0	0	0	0	1	0	0	0	12934	1841	64	5	525	5	PXMP4	20	32302531	Missense_Mutation	SNP	T	TCGA-A8-A08F-01A-11W-A019-09		32302531	30722989	107	11616										
GRAP2	0	genome.wustl.edu	37	chr22	40366922	40366922	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	ccaacagcgagtgcggtgggCccgggcgctgtatgactttg	16	11	0	1			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	22	40366922	40366922	C	G	SNP	GRAP2	ENST00000344138	human	ensembl	69_37n	1	known	missense	c.827	p.A276G	0.997	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351	27	0	0	36	10	21.74	-	-	-	G	40366922	C	G	40366922	3	3	190	1	0	0	0	0	1	0	0	0	6805	739	26	4	853	4	GRAP2	22	40366922	Missense_Mutation	SNP	C	TCGA-A8-A08F-01A-11W-A019-09		40366922	10937644	108	11617										
SHROOM2	0	genome.wustl.edu	37	chrX	9905450	9905451	+	Frame_Shift_Ins	INS	-	-	C													0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	agcccctgggcacccaggtgINSccccccgagaaagaccgctg							TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	X	9905450	9905451	-	C	INS	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	frame_shift_ins	c.3864_3865	p.E1290fs	0.000:0.001	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	8	0	0	5	3	37.5	-	-	-	C	9905451	-	C	9905450	7	5	190	1	0	1	1	0	0	0	0	0	14383	1306	46	0	3890	0	SHROOM2	23	9905450	Frame_Shift_Ins	INS	-	TCGA-A8-A08F-01A-11W-A019-09		9905450	145365110	109	11618										
GABRQ	0	genome.wustl.edu	37	chrX	151815563	151815563	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0636363636363636	7	0.726156158600314	1.17523961661342	1.54976652740231	0.9949118447521	1	1	0	cagcaaggatgctttcgtgcAtgatgtgactgtggagaatc	13	7	0	3			TCGA-A8-A08F-01A-11W-A019-09	TCGA-A8-A08F-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4975eeda-984e-4a7a-8193-43d8b6e0271c	f3828bb5-e811-4992-ba01-0fe463d82cab	X	151815563	151815563	A	T	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	missense	c.461	p.H154L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	124	0	0	92	26	22.03	-	-	-	T	151815563	A	T	151815563	3	4	190	1	0	0	0	0	1	0	0	0	6224	217	8	5	475	5	GABRQ	23	151815563	Missense_Mutation	SNP	A	TCGA-A8-A08F-01A-11W-A019-09	141910113	151815563	3454997	110	11619										
CCDC30	0	genome.wustl.edu	37	chr1	43108213	43108213	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tagaaaaaaggaaacttcagGagcaagtcatagagcaagaa	10	5	2	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	1	43108213	43108213	G	T	SNP	CCDC30	ENST00000340612	human	ensembl	69_37n	1	known	nonsense	c.1708	p.E570*	0.976	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409	437	0	0	442	118	21.07	-	-	-	T	43108213	G	T	43108213	4	4	191	1	0	0	0	0	0	1	0	0	2831	1175	41	2	1750	2	CCDC30	1	43108213	Nonsense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		43108213	206142408	1	11620										
OR10R2	0	genome.wustl.edu	37	chr1	158449837	158449837	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ttttctttttctgtatctagTcattcttagtggcaatgtca	6	7	6	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	1	158449837	158449837	T	C	SNP	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	missense	c.170	p.V57A	0.061	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	510	0	0	904	137	13.16	-	-	-	C	158449837	T	C	158449837	3	2	191	1	0	0	0	0	1	0	0	0	10990	1667	58	5	172	5	OR10R2	1	158449837	Missense_Mutation	SNP	T	TCGA-A8-A08G-01A-11W-A019-09	115341624	158449837	90800784	2	11621										
SOX13	0	genome.wustl.edu	37	chr1	204086755	204086756	+	Frame_Shift_Ins	INS	-	-	C													0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tatgtcatgatcccagccttINSccccccaagccaccaacctc							TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	1	204086755	204086756	-	C	INS	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	frame_shift_ins	c.695_696	p.S235fs	1.000:0.972	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	24	0	0	43	6	12.24	-	-	-	C	204086756	-	C	204086755	7	5	191	1	0	1	1	0	0	0	0	0	15033	1783	62	0	717	0	SOX13	1	204086755	Frame_Shift_Ins	INS	-	TCGA-A8-A08G-01A-11W-A019-09	45636918	204086755	45163866	3	11622										
CHRM3	0	genome.wustl.edu	37	chr1	240071679	240071679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ccaacaggaggaagtatggcCgctgccacttctggttcaca	11	12	2	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	1	240071679	240071679	C	T	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	missense	c.928	p.R310C	0.972	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	77	0	0	50	74	59.68	-	-	-	T	240071679	C	T	240071679	3	4	191	1	0	0	0	0	1	0	0	0	3407	652	23	1	930	1	CHRM3	1	240071679	Missense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	35984924	240071679	9178942	4	11623										
NRXN1	0	genome.wustl.edu	37	chr2	50149131	50149131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tcttatttttgttggagcttTtcgcactgctgggttgtttc	10	7	1	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	2	50149131	50149131	T	C	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.4451	p.K1484R	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	270	0	0	204	27	11.69	-	-	-	C	50149131	T	C	50149131	3	2	191	1	0	0	0	0	1	0	0	0	10738	1841	64	5	52	5	NRXN1	2	50149131	Missense_Mutation	SNP	T	TCGA-A8-A08G-01A-11W-A019-09		50149131	193050242	5	11624										
DHRS9	0	genome.wustl.edu	37	chr2	169938396	169938396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	gtgggtgaagaaccaagttgGggagaaaggtgagagacatg	18	3	0	5			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	2	169938396	169938396	G	A	SNP	DHRS9	ENST00000432060	human	ensembl	69_37n	1	known	missense	c.485	p.G162E	1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737	190	0	0	175	27	13.37	-	-	-	A	169938396	G	A	169938396	3	1	191	1	0	0	0	0	1	0	0	0	4534	1232	43	4	307	4	DHRS9	2	169938396	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09	119789265	169938396	73260977	6	11625										
AQP12A	0	genome.wustl.edu	37	chr2	241631413	241631413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	caggcgggcctccaaggcccTgctcccagtgggcgcctatg	14	16	0	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	2	241631413	241631413	T	G	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.83	p.L28R	0.987	pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	10	0	0	9	7	43.75	-	-	-	G	241631413	T	G	241631413	3	3	191	1	0	0	0	0	1	0	0	0	826	1580	55	5	85	5	AQP12A	2	241631413	Missense_Mutation	SNP	T	TCGA-A8-A08G-01A-11W-A019-09	71693017	241631413	1567960	7	11626										
ZNF454	0	genome.wustl.edu	37	chr5	178392799	178392799	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	taagagaattcatactagggAaaaaccttacaaatgtaaaa	6	5	1	1			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	5	178392799	178392799	A	G	SNP	ZNF454	ENST00000320129	human	ensembl	69_37n	1	known	missense	c.1394	p.E465G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	231	0	0	385	90	18.95	-	-	-	G	178392799	A	G	178392799	3	3	191	1	0	0	0	0	1	0	0	0	18019	246	9	5	1408	5	ZNF454	5	178392799	Missense_Mutation	SNP	A	TCGA-A8-A08G-01A-11W-A019-09		178392799	2522461	8	11627										
RBM24	0	genome.wustl.edu	37	chr6	17292294	17292294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ccgctgcagcagctgctgccGctgcagcatttggccagtac	12	15	0	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	6	17292294	17292294	G	A	SNP	RBM24	ENST00000379052	human	ensembl	69_37n	1	known	missense	c.655	p.A219T	0.933	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM24	HGNC	ENSG00000112183	67	0	0	52	10	16.13	-	-	-	A	17292294	G	A	17292294	3	1	191	1	0	0	0	0	1	0	0	0	13207	1087	38	1	702	1	RBM24	6	17292294	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		17292294	153822773	9	11628										
DNAH8	0	genome.wustl.edu	37	chr6	38840839	38840839	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ctgtttgaagtccacaatatCgagaacgcctctcctgccac	7	14	1	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	6	38840839	38840839	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.6744	p.I2248	0.951	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	229	0	0	245	49	16.61	-	-	-	T	38840839	C	T	38840839	2	4	191	1	0	0	0	0	0	0	0	1	4642	874	31	1		1	DNAH8	6	38840839	Silent	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	21548545	38840839	132274228	10	11629										
POLR1C	0	genome.wustl.edu	37	chr6	43488439	43488439	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	gacatcaccctgcttgagccCgtggaaggggaggcagctga	15	11	1	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	6	43488439	43488439	C	G	SNP	POLR1C	ENST00000372389	human	ensembl	69_37n	1	known	silent	c.732	p.P244	0.130	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,superfamily_DNA-dir_RNA_pol_insert,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR1C	HGNC	ENSG00000171453	92	0	0	101	31	23.48	-	-	-	G	43488439	C	G	43488439	2	3	191	1	0	0	0	0	0	0	0	1	12285	639	23	3		3	POLR1C	6	43488439	Silent	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	4647600	43488439	127626628	11	11630										
GRIK2	0	genome.wustl.edu	37	chr6	102337592	102337592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	gacttttccaagccctttatGacacttggaataagtatttt	6	8	0	1			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	6	102337592	102337592	G	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.1602	p.M534I	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	366	0	0	245	56	18.6	-	-	-	C	102337592	G	C	102337592	3	2	191	1	0	0	0	0	1	0	0	0	6825	1290	45	2	1644	2	GRIK2	6	102337592	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09	58849153	102337592	68777475	12	11631										
KLHL7	0	genome.wustl.edu	37	chr7	23212573	23212573	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tttaattttttcagatggacTgagctgtgtccaatgattga	9	5	1	4			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	7	23212573	23212573	T	G	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	silent	c.1386	p.T462	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	183	0	0	153	113	42.48	-	-	-	G	23212573	T	G	23212573	2	3	191	1	0	0	0	0	0	0	0	1	8447	1567	55	5		5	KLHL7	7	23212573	Silent	SNP	T	TCGA-A8-A08G-01A-11W-A019-09		23212573	135926090	13	11632										
SRRT	0	genome.wustl.edu	37	chr7	100482032	100482032	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	acggagaatgatcttcgcatCctggagcaggaggaggagga	16	7	1	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	7	100482032	100482032	C	T	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	silent	c.801	p.I267	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	10	0	0	12	7	36.84	-	-	-	T	100482032	C	T	100482032	2	4	191	1	0	0	0	0	0	0	0	1	15263	845	30	2		2	SRRT	7	100482032	Silent	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	77269459	100482032	58656631	14	11633										
KCNB2	0	genome.wustl.edu	37	chr8	73848282	73848282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tggacaactcaatgacaaccGccaattagcacacgtggagg	10	11	1	1			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	8	73848282	73848282	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	missense	c.692	p.R231H	0.368	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	217	0	0	230	131	36.29	-	-	-	A	73848282	G	A	73848282	3	1	191	1	0	0	0	0	1	0	0	0	8067	1087	38	1	698	1	KCNB2	8	73848282	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		73848282	72515740	15	11634										
ROR2	0	genome.wustl.edu	37	chr9	94493291	94493292	+	Frame_Shift_Ins	INS	-	-	C													0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	gggttccggcagtaggcgtgINScccccctccaagctcaggga							TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	9	94493291	94493292	-	C	INS	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1084_1083	p.H361fs	1.000:0.825	pirsf_Tyr_kinase_rcpt_ROR,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	29	0	0	21	3	12.5	-	-	-	C	94493292	-	C	94493291	7	5	191	1	0	1	1	0	0	0	0	0	13613	1319	46	0	1759	0	ROR2	9	94493291	Frame_Shift_Ins	INS	-	TCGA-A8-A08G-01A-11W-A019-09		94493291	46720140	16	11635										
PLCE1	0	genome.wustl.edu	37	chr10	96014009	96014009	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	aaggccaagatgcacaaagaGtgtcgaagccggagtggttc	14	8	0	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	10	96014009	96014009	G	T	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.3342	p.E1114D	0.999	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	230	0	0	129	138	51.69	-	-	-	T	96014009	G	T	96014009	3	4	191	1	0	0	0	0	1	0	0	0	12108	1020	36	4	3662	4	PLCE1	10	96014009	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		96014009	39520738	17	11636										
MRPL11	0	genome.wustl.edu	37	chr11	66204842	66204842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	tgtttgccgggcccccttttCaatcccagctgctgccttca	8	16	2	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	11	66204842	66204842	C	G	SNP	MRPL11	ENST00000310999	human	ensembl	69_37n	-1	known	missense	c.292	p.E98Q	1.000	pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	-	no_errors	MRPL11	HGNC	ENSG00000174547	66	0	0	46	95	66.9	-	-	-	G	66204842	C	G	66204842	3	3	191	1	0	0	0	0	1	0	0	0	9848	835	29	2	375	2	MRPL11	11	66204842	Missense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09		66204842	68801674	18	11637										
A2M	0	genome.wustl.edu	37	chr12	9251298	9251298	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ctgaggagccgctgtgactcGcaggtgggcgtgtgaggctg	19	9	0	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	12	9251298	9251298	G	A	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	nonsense	c.1756	p.R586*	0.003	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	23	0	0	32	12	27.27	-	-	-	A	9251298	G	A	9251298	4	1	191	1	0	0	0	0	0	1	0	0	4	1095	38	1	2756	1	A2M	12	9251298	Nonsense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		9251298	124600597	19	11638										
ZDHHC17	0	genome.wustl.edu	37	chr12	77199202	77199202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	cattgggctgccatcaataaCagaatagatttagtcaagta	8	7	2	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	12	77199202	77199202	C	T	SNP	ZDHHC17	ENST00000552453	human	ensembl	69_37n	1	known	missense	c.296	p.T99I	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZDHHC17	HGNC	ENSG00000186908	40	0	0	33	7	17.5	-	-	-	T	77199202	C	T	77199202	3	4	191	1	0	0	0	0	1	0	0	0	17703	477	17	4	313	4	ZDHHC17	12	77199202	Missense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	67947904	77199202	56652693	20	11639										
WBP4	0	genome.wustl.edu	37	chr13	41656885	41656885	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	agcactgaaaatgagtatgtAtcaacttcagaagctgatgg	10	6	2	4			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	13	41656885	41656885	A	G	SNP	WBP4	ENST00000379487	human	ensembl	69_37n	1	known	silent	c.966	p.V322	0.005	NULL	pfam_WW_Rsp5_WWP,pfam_Znf_U1-C,superfamily_WW_Rsp5_WWP,smart_Znf_U1,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688	159	0	0	142	100	41.32	-	-	-	G	41656885	A	G	41656885	2	3	191	1	0	0	0	0	0	0	0	1	17358	436	16	5		5	WBP4	13	41656885	Silent	SNP	A	TCGA-A8-A08G-01A-11W-A019-09		41656885	73512993	21	11640										
FRMD5	0	genome.wustl.edu	37	chr15	44166630	44166630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	aagtggaacgcactggtgtgGaatgggcactgtcccgtaag	15	8	0	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	15	44166630	44166630	G	T	SNP	FRMD5	ENST00000417257	human	ensembl	69_37n	-1	known	missense	c.1166	p.S389Y	1.000	NULL	pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD5	HGNC	ENSG00000171877	87	0	0	112	15	11.81	-	-	-	T	44166630	G	T	44166630	3	4	191	1	0	0	0	0	1	0	0	0	6102	1174	41	2	550	2	FRMD5	15	44166630	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09		44166630	58364762	22	11641										
PRTG	0	genome.wustl.edu	37	chr15	55972757	55972757	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	attccaaaactacagtctgaTgaagagatgttgttatgttc	8	6	1	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	15	55972757	55972757	T	A	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.746	p.H249L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	344	0	0	241	102	29.74	-	-	-	A	55972757	T	A	55972757	3	1	191	1	0	0	0	0	1	0	0	0	12718	1464	51	5	2770	5	PRTG	15	55972757	Missense_Mutation	SNP	T	TCGA-A8-A08G-01A-11W-A019-09	11806127	55972757	46558635	23	11642										
SCARF1	0	genome.wustl.edu	37	chr17	1540304	1540305	+	Frame_Shift_Ins	INS	-	-	C													0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	gagcccaagctggtcagtgtINScccccagacctgcagcttca							TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	17	1540304	1540305	-	C	INS	SCARF1	ENST00000263071	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1417_1416	p.T472fs	0.974:0.963	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660	27	0	0	16	2	11.11	-	-	-	C	1540305	-	C	1540304	7	5	191	1	0	1	1	0	0	0	0	0	13970	1667	58	0	1087	0	SCARF1	17	1540304	Frame_Shift_Ins	INS	-	TCGA-A8-A08G-01A-11W-A019-09		1540304	79654906	24	11643										
HNF1B	0	genome.wustl.edu	37	chr17	36091721	36091721	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ccggaatgcctcctccttccTgcggtttgcaaaccagttgt	9	14	0	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	17	36091721	36091721	T	C	SNP	HNF1B	ENST00000225893	human	ensembl	69_37n	-1	known	missense	c.910	p.R304G	0.983	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1B	HGNC	ENSG00000108753	42	0	0	58	38	39.58	-	-	-	C	36091721	T	C	36091721	3	2	191	1	0	0	0	0	1	0	0	0	7303	1579	55	5	787	5	HNF1B	17	36091721	Missense_Mutation	SNP	T	TCGA-A8-A08G-01A-11W-A019-09	34551417	36091721	45103489	25	11644										
RNF213	0	genome.wustl.edu	37	chr17	78320721	78320721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	cccctgaagactctgcacccGctgctggaagacggatgcat	11	14	1	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	17	78320721	78320721	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.8586	p.P2862	0.000	smart_AAA+_ATPase	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	24	0	0	18	5	20.83	-	-	-	A	78320721	G	A	78320721	2	1	191	1	0	0	0	0	0	0	0	1	13563	1074	38	1		1	RNF213	17	78320721	Silent	SNP	G	TCGA-A8-A08G-01A-11W-A019-09	42229000	78320721	2874489	26	11645										
RYR1	0	genome.wustl.edu	37	chr19	39008172	39008172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	acctgccccgatggtgggagCgcgggcccgaggcaccccct	15	17	0	0			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	19	39008172	39008172	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.9859	p.R3287C	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	18	0	0	25	6	19.35	-	-	-	T	39008172	C	T	39008172	3	4	191	1	0	0	0	0	1	0	0	0	13854	768	27	1	10121	1	RYR1	19	39008172	Missense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09		39008172	20120811	27	11646										
SIGLEC10	0	genome.wustl.edu	37	chr19	51918504	51918504	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	agcgtggcaggtgaactctcCttcgtgctccacttgaaccc	10	14	1	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	19	51918504	51918504	C	A	SNP	SIGLEC10	ENST00000339313	human	ensembl	69_37n	-1	known	nonsense	c.1261	p.G421*	0.937	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC10	HGNC	ENSG00000142512	57	0	0	49	16	24.62	-	-	-	A	51918504	C	A	51918504	4	1	191	1	0	0	0	0	0	1	0	0	14395	690	24	4	852	4	SIGLEC10	19	51918504	Nonsense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09	12910332	51918504	7210479	28	11647										
NLRP5	0	genome.wustl.edu	37	chr19	56549506	56549506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	acaaggtgacagaccagggaGtaatgcctctcagtgatgcc	12	10	1	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	19	56549506	56549506	G	T	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	missense	c.2731	p.V911L	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	170	1	0.58	164	53	24.42	-	-	-	T	56549506	G	T	56549506	3	4	191	1	0	0	0	0	1	0	0	0	10552	1029	36	4	2769	4	NLRP5	19	56549506	Missense_Mutation	SNP	G	TCGA-A8-A08G-01A-11W-A019-09	4631002	56549506	2579477	29	11648										
ZNF805	0	genome.wustl.edu	37	chr19	57764473	57764473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	aacccaagagcacagaacctAccacctgtgagctagccttg	8	14	0	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	19	57764473	57764473	A	G	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	missense	c.286	p.T96A	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	18	0	0	14	4	22.22	-	-	-	G	57764473	A	G	57764473	3	3	191	1	0	0	0	0	1	0	0	0	18265	391	14	5	300	5	ZNF805	19	57764473	Missense_Mutation	SNP	A	TCGA-A8-A08G-01A-11W-A019-09	1214967	57764473	1364510	30	11649										
SEMG1	0	genome.wustl.edu	37	chr20	43837007	43837007	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	cttcaagtacggaagaaagaCgactccactatggagaaaat	9	8	1	3			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	20	43837007	43837007	C	T	SNP	SEMG1	ENST00000372781	human	ensembl	69_37n	1	known	nonsense	c.1069	p.R357*	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233	175	0	0	392	66	14.41	-	-	-	T	43837007	C	T	43837007	4	4	191	1	0	0	0	0	0	1	0	0	14132	528	19	1	1075	1	SEMG1	20	43837007	Nonsense_Mutation	SNP	C	TCGA-A8-A08G-01A-11W-A019-09		43837007	19188513	31	11650										
BCAS1	0	genome.wustl.edu	37	chr20	52645062	52645062	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.882119990247693	1.07321428571429	5.00833333333333	0	0.333333333333333	0.930327025915261	0	ctgtcccttgtccagcttgaAgaatttgtcaaaaaagctgg	9	9	1	2			TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	20	52645062	52645062	A	T	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.592	p.F198I	0.999	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	348	0	0	586	68	10.38	-	-	-	T	52645062	A	T	52645062	3	4	191	1	0	0	0	0	1	0	0	0	1354	72	3	5	1198	5	BCAS1	20	52645062	Missense_Mutation	SNP	A	TCGA-A8-A08G-01A-11W-A019-09	8808055	52645062	10380458	32	11651										
ZBTB48	0	genome.wustl.edu	37	chr1	6649225	6649225	+	Frame_Shift_Del	DEL	C	C	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccggcccaggtgtcctggagCcctccctcatcatcacagct							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	1	6649225	6649225	C	-	DEL	ZBTB48	ENST00000377674	human	ensembl	69_37n	1	known	frame_shift_del	c.2020	p.S675fs	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859	24	0	0	13	20	58.82	-	-	-	-	6649225	C	-	6649225	7	5	192	1	0	1	0	1	0	0	0	0	17645	739	26	0	2058	0	ZBTB48	1	6649225	Frame_Shift_Del	DEL	C	TCGA-A8-A08H-01A-21W-A019-09		6649225	242601396	1	11652										
FAM167B	0	genome.wustl.edu	37	chr1	32713099	32713099	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ggagggggagagcctggactCtgtgaaggcactgacagcca	17	9	1	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	1	32713099	32713099	C	T	SNP	FAM167B	ENST00000373582	human	ensembl	69_37n	1	known	missense	c.77	p.S26F	0.999	NULL	pfam_FAM167	-	no_errors	FAM167B	HGNC	ENSG00000183615	39	0	0	36	9	20	-	-	-	T	32713099	C	T	32713099	3	4	192	1	0	0	0	0	1	0	0	0	5524	913	32	2	79	2	FAM167B	1	32713099	Missense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	26063874	32713099	216537522	2	11653										
FGGY	0	genome.wustl.edu	37	chr1	60103948	60103948	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agtcacctggatctgattaaGaaggctcagcctgtgggttt	12	8	3	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	1	60103948	60103948	G	A	SNP	FGGY	ENST00000303721	human	ensembl	69_37n	1	known	silent	c.1122	p.K374	1.000	pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456	304	1	0.33	319	92	22.38	-	-	-	A	60103948	G	A	60103948	2	1	192	1	0	0	0	0	0	0	0	1	5917	933	33	2		2	FGGY	1	60103948	Silent	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	27390849	60103948	189146673	3	11654										
CD5L	0	genome.wustl.edu	37	chr1	157803094	157803094	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gagcaacgaacattatccagCcagatgcggccaaccccagg	10	14	0	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	1	157803094	157803094	C	T	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	nonsense	c.927	p.W309*	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	132	0	0	187	32	14.61	-	-	-	T	157803094	C	T	157803094	4	4	192	1	0	0	0	0	0	1	0	0	3056	740	26	4	124	4	CD5L	1	157803094	Nonsense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	97699146	157803094	91447527	4	11655										
KIF26B	0	genome.wustl.edu	37	chr1	245582913	245582913	+	Frame_Shift_Del	DEL	G	G	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	atgacagagagtagccgggaGggactaacagaagcagtgct							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	1	245582913	245582913	G	-	DEL	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	frame_shift_del	c.1032	p.G345fs	0.997	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	126	0	0	90	81	47.37	-	-	-	-	245582913	G	-	245582913	7	5	192	1	0	1	0	1	0	0	0	0	8347	991	35	0	1046	0	KIF26B	1	245582913	Frame_Shift_Del	DEL	G	TCGA-A8-A08H-01A-21W-A019-09	87779819	245582913	3667708	5	11656										
KLF11	0	genome.wustl.edu	37	chr2	10192628	10192628	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ctggtgagcatgccagcctcTgcctgaaaggtccattagga	12	11	1	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	2	10192628	10192628	T	G	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	1	known	silent	c.1533	p.S511	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	22	0	0	24	10	29.41	-	-	-	G	10192628	T	G	10192628	2	3	192	1	0	0	0	0	0	0	0	1	8392	1567	55	5		5	KLF11	2	10192628	Silent	SNP	T	TCGA-A8-A08H-01A-21W-A019-09		10192628	233006745	6	11657										
TTN	0	genome.wustl.edu	37	chr2	179593267	179593267	+	Frame_Shift_Del	DEL	G	G	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tcacagctactgcttccgaaGtcattttccaccttgaaagt							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	2	179593267	179593267	G	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.15654	p.F5219fs	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	123	0	0	84	42	31.82	-	-	-	-	179593267	G	-	179593267	7	5	192	1	0	1	0	1	0	0	0	0	16832	1020	36	0	85331	0	TTN	2	179593267	Frame_Shift_Del	DEL	G	TCGA-A8-A08H-01A-21W-A019-09	169400639	179593267	63606106	7	11658										
COL4A4	0	genome.wustl.edu	37	chr2	227872899	227872899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gagagtggcatcatggggagGggcgcagcgctggccagcca	19	10	1	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	2	227872899	227872899	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	silent	c.4644	p.P1548	0.004	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	23	0	0	27	8	22.86	-	-	-	A	227872899	G	A	227872899	2	1	192	1	0	0	0	0	0	0	0	1	3723	1219	43	4		4	COL4A4	2	227872899	Silent	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	48279632	227872899	15326474	8	11659										
COL4A4	0	genome.wustl.edu	37	chr2	227924177	227924177	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cttttatccctggcactcctGaaagacccctctttcccggg	7	16	1	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	2	227924177	227924177	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.2327	p.S776L	0.938	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	193	0	0	136	34	20	-	-	-	A	227924177	G	A	227924177	3	1	192	1	0	0	0	0	1	0	0	0	3723	1294	45	2	2829	2	COL4A4	2	227924177	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	51278	227924177	15275196	9	11660										
GRIP2	0	genome.wustl.edu	37	chr3	14559282	14559282	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gcagggcaggcacattacatCggctttggtcctggccagca	13	12	0	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	3	14559282	14559282	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	10	0	0	18	5	21.74	-	-	-	T	14559282	C	T	14559282	1	4	192	0	1	0	0	0	0	0	0	0	6839	884	31	1		1	GRIP2	3	14559282	RNA	SNP	C	TCGA-A8-A08H-01A-21W-A019-09		14559282	183463148	10	11661										
RBM15B	0	genome.wustl.edu	37	chr3	51430439	51430439	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	acaggacgcccccacaccttCtgtactcagaccgagaccgg	9	17	2	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	3	51430439	51430439	C	T	SNP	RBM15B	ENST00000323686	human	ensembl	69_37n	1	novel	silent	c.1609	p.L537	0.993	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837	21	0	0	8	13	61.9	-	-	-	T	51430439	C	T	51430439	2	4	192	1	0	0	0	0	0	0	0	1	13200	912	32	2		2	RBM15B	3	51430439	Silent	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	36871157	51430439	146591991	11	11662										
MUC20	0	genome.wustl.edu	37	chr3	195346862	195346862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gcttcctcctacagccccttGgaagccgccctcaagaactt	7	17	1	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	3	195346862	195346862	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	silent	c.1164	p.L388	0.001	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	42	0	0	30	5	14.29	-	-	-	A	195346862	G	A	195346862	2	1	192	1	0	0	0	0	0	0	0	1	10048	1363	47	4		4	MUC20	3	195346862	Silent	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	143916423	195346862	2675568	12	11663										
ZFYVE28	0	genome.wustl.edu	37	chr4	2341340	2341340	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cagcgggcgcatggccatgcTctccagctcccggttcatga	12	15	2	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	4	2341340	2341340	T	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	missense	c.361	p.S121C	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	11	0	0	3	7	70	-	-	-	A	2341340	T	A	2341340	3	1	192	1	0	0	0	0	1	0	0	0	17766	1551	54	5	2562	5	ZFYVE28	4	2341340	Missense_Mutation	SNP	T	TCGA-A8-A08H-01A-21W-A019-09		2341340	188812936	13	11664										
C4orf3	0	genome.wustl.edu	37	chr4	120221825	120221825	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cgccccgggttccggaatgcActctgaacctactcttccca	8	17	2	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	4	120221825	120221825	A	C	SNP	C4orf3	ENST00000399075	human	ensembl	69_37n	-1	known	missense	c.265	p.C89G	0.000	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096	16	0	0	27	7	20.59	-	-	-	C	120221825	A	C	120221825	3	2	192	1	0	0	0	0	1	0	0	0	2281	159	6	5	342	5	C4orf3	4	120221825	Missense_Mutation	SNP	A	TCGA-A8-A08H-01A-21W-A019-09	117880485	120221825	70932451	14	11665										
MAP3K1	0	genome.wustl.edu	37	chr5	56178411	56178411	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ttagatgtcaatacagagctCaactccagtattgaggacct	8	9	2	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	5	56178411	56178411	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	silent	c.3384	p.L1128	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	175	0	0	177	28	13.66	-	-	-	T	56178411	C	T	56178411	2	4	192	1	0	0	0	0	0	0	0	1	9314	813	29	2		2	MAP3K1	5	56178411	Silent	SNP	C	TCGA-A8-A08H-01A-21W-A019-09		56178411	124736849	15	11666										
PCDHB6	0	genome.wustl.edu	37	chr5	140531687	140531688	+	Frame_Shift_Del	DEL	GC	GC	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tcggtctgttcggcgtgtggGcgcacaatggcgaggtgcgc							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	5	140531687	140531688	GC	-	DEL	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	frame_shift_del	c.1849_1850	p.H618fs	0.986:0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	45	0	0	30	15	33.33	-	-	-	-	140531688	GC	-	140531687	7	5	192	1	0	1	0	1	0	0	0	0	11619	1203	42	0	1851	0	PCDHB6	5	140531687	Frame_Shift_Del	DEL	GC	TCGA-A8-A08H-01A-21W-A019-09	84353276	140531687	40383573	16	11667										
UNC5A	0	genome.wustl.edu	37	chr5	176305378	176305378	+	Frame_Shift_Del	DEL	T	T	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ctccctgtggaagagtaagcTccttgtcagctaccaggtga							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	5	176305378	176305378	T	-	DEL	UNC5A	ENST00000329542	human	ensembl	69_37n	1	known	frame_shift_del	c.2003	p.L668fs	1.000	NULL	pfam_ZU5,pfam_Death,pfam_Ig_I-set,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5A	HGNC	ENSG00000113763	26	0	0	7	4	36.36	-	-	-	-	176305378	T	-	176305378	7	5	192	1	0	1	0	1	0	0	0	0	17088	1551	54	0	2049	0	UNC5A	5	176305378	Frame_Shift_Del	DEL	T	TCGA-A8-A08H-01A-21W-A019-09	35773691	176305378	4609882	17	11668										
HOXA11	0	genome.wustl.edu	37	chr7	27224568	27224569	+	Frame_Shift_Ins	INS	-	-	A													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ttagtggcgggctcaatggcINSgtactctctgaaggtcactt							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	7	27224568	27224569	-	A	INS	HOXA11	ENST00000006015	human	ensembl	69_37n	-1	known	frame_shift_ins	c.196_195	p.A65fs	1.000:1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXA11	HGNC	ENSG00000005073	9	0	0	8	5	38.46	-	-	-	A	27224569	-	A	27224568	7	5	192	1	0	1	1	0	0	0	0	0	7341	768	27	0	753	0	HOXA11	7	27224568	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09		27224568	131914095	18	11669										
OR4F21	0	genome.wustl.edu	37	chr8	116434	116434	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccactgttaacagtgaccatGaactgcaatctgtaggtgtc	9	10	1	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	8	116434	116434	G	A	SNP	OR4F21	ENST00000320901	human	ensembl	69_37n	-1	known	silent	c.591	p.F197	0.520	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F21	HGNC	ENSG00000176269	68	0	0	86	14	14	-	-	-	A	116434	G	A	116434	2	1	192	1	0	0	0	0	0	0	0	1	11136	1281	45	2		2	OR4F21	8	116434	Silent	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		116434	146247588	19	11670										
MKI67	0	genome.wustl.edu	37	chr10	129914073	129914073	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	aaatttctttaaaatccccaGaaatgggatcagctgcattt	6	8	2	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	10	129914073	129914073	G	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.599	p.S200F	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	99	0	0	92	38	29.23	-	-	-	A	129914073	G	A	129914073	3	1	192	1	0	0	0	0	1	0	0	0	9669	942	33	2	9207	2	MKI67	10	129914073	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		129914073	5620674	20	11671										
TMEM132A	0	genome.wustl.edu	37	chr11	60704276	60704279	+	Frame_Shift_Del	DEL	TTGT	TTGT	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccctgctgtgcagtccatccTtgtggcaggcgaggaggaca							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	TTGT	TTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	11	60704276	60704279	TTGT	-	DEL	TMEM132A	ENST00000005286	human	ensembl	69_37n	1	known	frame_shift_del	c.2972_2975	p.L991fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	19	0	0	8	6	42.86	-	-	-	-	60704279	TTGT	-	60704276	7	5	192	1	0	1	0	1	0	0	0	0	16140	1609	56	0	3014	0	TMEM132A	11	60704276	Frame_Shift_Del	DEL	TTGT	TCGA-A8-A08H-01A-21W-A019-09		60704276	74302240	21	11672										
MYBPC1	0	genome.wustl.edu	37	chr12	102040637	102040637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tatgtgacagccggtgatgaGaaatgttccactgagctctt	11	8	1	4			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	12	102040637	102040637	G	A	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	silent	c.1062	p.E354	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	88	0	0	78	18	18.75	-	-	-	A	102040637	G	A	102040637	2	1	192	1	0	0	0	0	0	0	0	1	10083	933	33	2		2	MYBPC1	12	102040637	Silent	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		102040637	31811258	22	11673										
CUX2	0	genome.wustl.edu	37	chr12	111746104	111746104	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ggcagcatcctgaaagccatGaagctggcctccagcacctg	11	14	0	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	12	111746104	111746104	G	A	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	missense	c.1125	p.M375I	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	62	0	0	106	89	45.64	-	-	-	A	111746104	G	A	111746104	3	1	192	1	0	0	0	0	1	0	0	0	4096	1290	45	2	1175	2	CUX2	12	111746104	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	9705467	111746104	22105791	23	11674										
TSC22D1	0	genome.wustl.edu	37	chr13	45150014	45150014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	aagatgctgcagggggcggcGgctgaagcagcgacggaggc	20	9	0	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	13	45150014	45150014	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.197	p.P66L	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	16	0	0	9	8	47.06	-	-	-	A	45150014	G	A	45150014	3	1	192	1	0	0	0	0	1	0	0	0	16703	1116	39	1	3165	1	TSC22D1	13	45150014	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		45150014	70019864	24	11675										
F10	0	genome.wustl.edu	37	chr13	113803265	113803265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agcaggaggagggcggtgagGcggtgcacgaggtggaggtg	24	5	0	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	13	113803265	113803265	G	A	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	missense	c.901	p.A301T	0.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	14	0	0	22	26	54.17	-	-	-	A	113803265	G	A	113803265	3	1	192	1	0	0	0	0	1	0	0	0	5373	1203	42	4	931	4	F10	13	113803265	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	68653251	113803265	1366613	25	11676										
NFATC4	0	genome.wustl.edu	37	chr14	24842944	24842944	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agcttcggaattcagacattGagcttcggaagggtgagacg	14	7	1	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	14	24842944	24842944	G	A	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	missense	c.1792	p.E598K	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	54	0	0	24	4	14.29	-	-	-	A	24842944	G	A	24842944	3	1	192	1	0	0	0	0	1	0	0	0	10437	1291	45	2	1814	2	NFATC4	14	24842944	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		24842944	82506596	26	11677										
ZFYVE26	0	genome.wustl.edu	37	chr14	68229469	68229469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agctggctgcaagatctgatCcaaagatggcacgtggcgat	13	9	1	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	14	68229469	68229469	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.6079	p.D2027N	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	79	0	0	131	52	27.96	-	-	-	T	68229469	C	T	68229469	3	4	192	1	0	0	0	0	1	0	0	0	17764	855	30	2	1580	2	ZFYVE26	14	68229469	Missense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	43386525	68229469	39120071	27	11678										
BAHD1	0	genome.wustl.edu	37	chr15	40750982	40750982	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccagcccggccccatccagtGaagaccctggccttgcccag	10	19	0	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	40750982	40750982	G	A	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	missense	c.319	p.E107K	0.607	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	23	0	0	26	12	31.58	-	-	-	A	40750982	G	A	40750982	3	1	192	1	0	0	0	0	1	0	0	0	1301	1291	45	2	321	2	BAHD1	15	40750982	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		40750982	61780410	28	11679										
EPB42	0	genome.wustl.edu	37	chr15	43500959	43500959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	caccacgcgggcagggattcCcaggcatcgcagcactgtga	13	14	0	1			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	43500959	43500959	C	G	SNP	EPB42	ENST00000300215	human	ensembl	69_37n	-1	known	missense	c.937	p.G313R	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	EPB42	HGNC	ENSG00000166947	56	0	0	36	6	14.29	-	-	-	G	43500959	C	G	43500959	3	3	192	1	0	0	0	0	1	0	0	0	5195	632	22	4	1256	4	EPB42	15	43500959	Missense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	2749977	43500959	59030433	29	11680										
SMAD3	0	genome.wustl.edu	37	chr15	67473741	67473742	+	Frame_Shift_Ins	INS	-	-	G													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cgcttctgcctagggctgctINSctccaatgtcaacaggaatg							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	67473741	67473742	-	G	INS	SMAD3	ENST00000327367	human	ensembl	69_37n	1	known	frame_shift_ins	c.821_822	p.S275fs	1.000:1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949	37	0	0	16	6	27.27	-	-	-	G	67473742	-	G	67473741	7	5	192	1	0	1	1	0	0	0	0	0	14848	1551	54	0	921	0	SMAD3	15	67473741	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	23972782	67473741	35057651	30	11681										
FAH	0	genome.wustl.edu	37	chr15	80445398	80445399	+	Frame_Shift_Ins	INS	-	-	G													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tgccgggtgctcttcagcatINSgtccttcatcccggtggccg							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	80445398	80445399	-	G	INS	FAH	ENST00000261755	human	ensembl	69_37n	1	known	frame_shift_ins	c.2_3	p.S2fs	1.000:1.000	superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876	25	0	0	11	4	26.67	-	-	-	G	80445399	-	G	80445398	7	5	192	1	0	1	1	0	0	0	0	0	5411	1464	51	0	4	0	FAH	15	80445398	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	12971657	80445398	22085994	31	11682										
ZNF592	0	genome.wustl.edu	37	chr15	85334030	85334030	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gtccccctactgctgcccggAgtgtggggtcctctgccgct	13	16	1	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	85334030	85334030	A	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.2315	p.E772V	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	77	0	0	84	12	12.5	-	-	-	T	85334030	A	T	85334030	3	4	192	1	0	0	0	0	1	0	0	0	18118	304	11	5	2321	5	ZNF592	15	85334030	Missense_Mutation	SNP	A	TCGA-A8-A08H-01A-21W-A019-09	4888632	85334030	17197362	32	11683										
AEN	0	genome.wustl.edu	37	chr15	89169685	89169687	+	In_Frame_Del	DEL	AGT	AGT	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agctgccagcagtgggaagcAgtgtctgagggctggatctg							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	15	89169685	89169687	AGT	-	DEL	AEN	ENST00000379231	human	ensembl	69_37n	1	known	in_frame_del	c.245_247	p.QC82in_frame_delR	0.002:0.000:0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026	8	0	0	9	7	43.75	-	-	-	-	89169687	AGT	-	89169685	7	5	192	1	0	1	0	1	0	0	0	0	351	188	7	0	247	0	AEN	15	89169685	In_Frame_Del	DEL	AGT	TCGA-A8-A08H-01A-21W-A019-09	3835655	89169685	13361707	33	11684										
MEFV	0	genome.wustl.edu	37	chr16	3304386	3304386	+	Missense_Mutation	SNP	G	G	C													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gggcaggtacacttcgaaggGcctgcactccttctgccccg							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	16	3304386	3304386	G	C	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.682	p.P228A	0.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	26	0	0	11	26	68.42	-	-	-	C	3304386	G	C	3304386	3	2	192	1	0	0	0	0	1	0	0	0	9530	1203	42	4	1699	4	MEFV	16	3304386	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		3304386	87050367	34	11685	137	2								
MEFV	0	genome.wustl.edu	37	chr16	3304392	3304392	+	Frame_Shift_Del	DEL	A	A	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gtacacttcgaagggcctgcActccttctgccccggggcgc							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	16	3304392	3304392	A	-	DEL	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	frame_shift_del	c.676	p.C226fs	0.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	22	0	0	9	18	64.29	-	-	-	-	3304392	A	-	3304392	7	5	192	1	0	1	0	1	0	0	0	0	9530	159	6	0	1705	0	MEFV	16	3304392	Frame_Shift_Del	DEL	A	TCGA-A8-A08H-01A-21W-A019-09	6	3304392	87050361	35	11686	137	2								
ADCY9	0	genome.wustl.edu	37	chr16	4164238	4164239	+	Frame_Shift_Ins	INS	-	-	C													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tggcactcatcttggtgaagINScccacgatatctgcaaataa							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	16	4164238	4164239	-	C	INS	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1206_1205	p.F403fs	0.990:1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	28	0	0	23	64	73.56	-	-	-	C	4164239	-	C	4164238	7	5	192	1	0	1	1	0	0	0	0	0	301	958	34	0	2895	0	ADCY9	16	4164238	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	859846	4164238	86190515	36	11687										
NOL3	0	genome.wustl.edu	37	chr16	67208834	67208835	+	Frame_Shift_Ins	INS	-	-	C													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	agcccgacttcgaggaaaggINSgacgagtccgaaggtgtgag							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	16	67208834	67208835	-	C	INS	NOL3	ENST00000568146	human	ensembl	69_37n	1	known	frame_shift_ins	c.596_597	p.T200fs	0.000:0.003	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	NOL3	HGNC	ENSG00000140939	148	0	0	92	14	13.21	-	-	-	C	67208835	-	C	67208834	7	5	192	1	0	1	1	0	0	0	0	0	10595	1232	43	0	612	0	NOL3	16	67208834	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	63044596	67208834	23145919	37	11688										
SLC12A4	0	genome.wustl.edu	37	chr16	67979728	67979729	+	Frame_Shift_Ins	INS	-	-	CG													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	catctgcgaccgctgctccaINStcatcagcgtccgctcgtag							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	16	67979728	67979729	-	CG	INS	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2792_2791	p.M931fs	1.000:1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	10	0	0	24	103	81.1	-	-	-	CG	67979729	-	CG	67979728	7	5	192	1	0	1	1	0	0	0	0	0	14474	217	8	0	487	0	SLC12A4	16	67979728	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	770894	67979728	22375025	38	11689										
PFAS	0	genome.wustl.edu	37	chr17	8168403	8168403	+	Frame_Shift_Del	DEL	C	C	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccggctggccgtggccgaagCcctcaccaacctggtgtttg							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	8168403	8168403	C	-	DEL	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	frame_shift_del	c.2240	p.L748fs	1.000	superfamily_PurM_N-like,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	8	0	0	10	11	52.38	-	-	-	-	8168403	C	-	8168403	7	5	192	1	0	1	0	1	0	0	0	0	11828	739	26	0	2306	0	PFAS	17	8168403	Frame_Shift_Del	DEL	C	TCGA-A8-A08H-01A-21W-A019-09		8168403	73026807	39	11690										
ELAC2	0	genome.wustl.edu	37	chr17	12898137	12898137	+	Frame_Shift_Del	DEL	C	C	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cggaatagaccactttccagCcagaggtgtgcaccagcgca							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	12898137	12898137	C	-	DEL	ELAC2	ENST00000338034	human	ensembl	69_37n	-1	known	frame_shift_del	c.1973	p.G658fs	1.000	pfam_Beta-lactamas-like	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	72	0	0	73	72	49.66	-	-	-	-	12898137	C	-	12898137	7	5	192	1	0	1	0	1	0	0	0	0	5084	739	26	0	523	0	ELAC2	17	12898137	Frame_Shift_Del	DEL	C	TCGA-A8-A08H-01A-21W-A019-09	4729734	12898137	68297073	40	11691	138	2								
ELAC2	0	genome.wustl.edu	37	chr17	12898144	12898144	+	Frame_Shift_Del	DEL	T	T	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	gaccactttccagccagaggTgtgcaccagcgcacagccaa							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	12898144	12898144	T	-	DEL	ELAC2	ENST00000338034	human	ensembl	69_37n	-1	known	frame_shift_del	c.1966	p.T656fs	0.421	pfam_Beta-lactamas-like	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	77	0	0	75	77	50	-	-	-	-	12898144	T	-	12898144	7	5	192	1	0	1	0	1	0	0	0	0	5084	1696	59	0	530	0	ELAC2	17	12898144	Frame_Shift_Del	DEL	T	TCGA-A8-A08H-01A-21W-A019-09	7	12898144	68297066	41	11692	138	2								
NMT1	0	genome.wustl.edu	37	chr17	43163979	43163979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	catggaggaggctagcaagcGaagctaccagttctgggata	14	8	1	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	43163979	43163979	G	A	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	missense	c.344	p.R115Q	1.000	superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	31	0	0	41	16	28.07	-	-	-	A	43163979	G	A	43163979	3	1	192	1	0	0	0	0	1	0	0	0	10575	1058	37	1	354	1	NMT1	17	43163979	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	30265835	43163979	38031231	42	11693										
GPR142	0	genome.wustl.edu	37	chr17	72367989	72367989	+	Frame_Shift_Del	DEL	G	G	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	caggtggtcatcgtgttcgcGggcttcctcctgcagggagc							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	72367989	72367989	G	-	DEL	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	frame_shift_del	c.639	p.G214fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	11	0	0	9	12	57.14	-	-	-	-	72367989	G	-	72367989	7	5	192	1	0	1	0	1	0	0	0	0	6700	1103	39	0	653	0	GPR142	17	72367989	Frame_Shift_Del	DEL	G	TCGA-A8-A08H-01A-21W-A019-09	29204010	72367989	8827221	43	11694										
SRP68	0	genome.wustl.edu	37	chr17	74068439	74068439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tgtttgccttcgatccggccGaagggcgttcgttttcttta	11	10	1	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	74068439	74068439	G	A	SNP	SRP68	ENST00000307877	human	ensembl	69_37n	-1	known	missense	c.134	p.S45L	0.059	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881	86	0	0	56	27	32.53	-	-	-	A	74068439	G	A	74068439	3	1	192	1	0	0	0	0	1	0	0	0	15247	1059	37	1	1813	1	SRP68	17	74068439	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	1700450	74068439	7126771	44	11695										
RNF213	0	genome.wustl.edu	37	chr17	78348337	78348338	+	Frame_Shift_Ins	INS	-	-	AG													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	aaggctctccgtgatgctgtINSggccaaagctgtcctcgagt							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	17	78348337	78348338	-	AG	INS	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	frame_shift_ins	c.13022_13023	p.A4342fs	0.889:0.995	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	28	0	0	26	15	36.59	-	-	-	AG	78348338	-	AG	78348337	7	5	192	1	0	1	1	0	0	0	0	0	13563	1696	59	0	13535	0	RNF213	17	78348337	Frame_Shift_Ins	INS	-	TCGA-A8-A08H-01A-21W-A019-09	4279898	78348337	2846873	45	11696										
ZNRF4	0	genome.wustl.edu	37	chr19	5455855	5455855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ggactttgcggatctgccggCgctgttcggcgtccccctgg	15	14	1	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	19	5455855	5455855	C	T	SNP	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	missense	c.353	p.A118V	0.757	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	37	0	0	27	17	38.64	-	-	-	T	5455855	C	T	5455855	3	4	192	1	0	0	0	0	1	0	0	0	18307	768	27	1	355	1	ZNRF4	19	5455855	Missense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09		5455855	53673128	46	11697										
MAST1	0	genome.wustl.edu	37	chr19	12979921	12979921	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cccttgctagtcccatgtctCcacgatctctgtcctccaac	5	18	2	0			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	19	12979921	12979921	C	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.2815	p.P939T	1.000	superfamily_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	45	0	0	90	11	10.89	-	-	-	A	12979921	C	A	12979921	3	1	192	1	0	0	0	0	1	0	0	0	9395	855	30	2	2901	2	MAST1	19	12979921	Missense_Mutation	SNP	C	TCGA-A8-A08H-01A-21W-A019-09	7524066	12979921	46149062	47	11698										
MLL4	0	genome.wustl.edu	37	chr19	36216136	36216136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	cccaggaggattgtgatttaGagaacgtgtggctgatgggg	17	5	0	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	19	36216136	36216136	G	A	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.3544	p.E1182K	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	20	0	0	15	15	50	-	-	-	A	36216136	G	A	36216136	3	1	192	1	0	0	0	0	1	0	0	0	9694	943	33	2	3586	2	MLL4	19	36216136	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	23236215	36216136	22912847	48	11699										
TBC1D20	0	genome.wustl.edu	37	chr20	422288	422288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	tcaatgatgggcatcagataGtttaatatatgcttggtgtt	10	4	2	2			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	20	422288	422288	G	T	SNP	TBC1D20	ENST00000354200	human	ensembl	69_37n	-1	known	missense	c.570	p.N190K	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D20	HGNC	ENSG00000125875	53	0	0	105	14	11.76	-	-	-	T	422288	G	T	422288	3	4	192	1	0	0	0	0	1	0	0	0	15701	1020	36	4	657	4	TBC1D20	20	422288	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		422288	62603232	49	11700										
SYTL5	0	genome.wustl.edu	37	chrX	37985868	37985868	+	Nonsense_Mutation	SNP	G	G	A													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ccatgggaagaacgtggattGgatggactctcagggggaag							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	X	37985868	37985868	G	A	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	nonsense	c.2144	p.W715*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	64	0	0	61	47	43.52	-	-	-	A	37985868	G	A	37985868	4	1	192	1	0	0	0	0	0	1	0	0	15578	1357	47	4	2210	4	SYTL5	23	37985868	Nonsense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09		37985868	117284692	50	11701	139	2								
SYTL5	0	genome.wustl.edu	37	chrX	37985869	37985869	+	Nonsense_Mutation	SNP	G	G	A													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	catgggaagaacgtggattgGatggactctcagggggaaga							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	X	37985869	37985869	G	A	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	nonsense	c.2145	p.W715*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	64	0	0	60	46	43.4	-	-	-	A	37985869	G	A	37985869	4	1	192	1	0	0	0	0	0	1	0	0	15578	1183	41	2	2211	2	SYTL5	23	37985869	Nonsense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	1	37985869	117284691	51	11702	139	2								
MAGED2	0	genome.wustl.edu	37	chrX	54841170	54841170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ggggcctgcgctcttactatGagaccagcaagatgaaagtc	12	10	1	3			TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	X	54841170	54841170	G	A	SNP	MAGED2	ENST00000218439	human	ensembl	69_37n	1	known	missense	c.1348	p.E450K	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	139	0	0	146	26	15.12	-	-	-	A	54841170	G	A	54841170	3	1	192	1	0	0	0	0	1	0	0	0	9255	1291	45	2	1386	2	MAGED2	23	54841170	Missense_Mutation	SNP	G	TCGA-A8-A08H-01A-21W-A019-09	16855301	54841170	100429390	52	11703										
SRPX2	0	genome.wustl.edu	37	chrX	99921786	99921787	+	Frame_Shift_Del	DEL	GG	GG	-													0.26	13	6.90971863469697e-06	4.83386075949367	0	5.04402861860209	1.92296598273177e-07	2.08962303456852e-05	10	ctctgaaacctccgcagcacGgctacctcacctgcacctca							TCGA-A8-A08H-01A-21W-A019-09	TCGA-A8-A08H-10A-01W-A021-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26161c06-f816-489a-8800-e0a68a4ce78a	c384d5d9-b1d6-4553-8f3f-7602dbaca681	X	99921786	99921787	GG	-	DEL	SRPX2	ENST00000373004	human	ensembl	69_37n	1	known	frame_shift_del	c.817_818	p.G273fs	1.000:1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359	90	0	0	66	143	68.42	-	-	-	-	99921787	GG	-	99921786	7	5	192	1	0	1	0	1	0	0	0	0	15256	1116	39	0	843	0	SRPX2	23	99921786	Frame_Shift_Del	DEL	GG	TCGA-A8-A08H-01A-21W-A019-09	45080616	99921786	55348774	53	11704										
MAGI3	0	genome.wustl.edu	37	chr1	114191882	114191882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	caaacaccaaagatttggatGtttttcttcgaaaacaagag	7	7	1	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	1	114191882	114191882	G	A	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	missense	c.2179	p.V727I	1.000	superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	407	0	0	133	49	26.92	-	-	-	A	114191882	G	A	114191882	3	1	193	1	0	0	0	0	1	0	0	0	9263	1377	48	4	2229	4	MAGI3	1	114191882	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		114191882	135058739	1	11705										
ATP1A4	0	genome.wustl.edu	37	chr1	160144375	160144375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ctggacttcctcagggagccGttgtggccgtgacaggtgac	15	11	1	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	1	160144375	160144375	G	A	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.2149	p.V717I	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	233	0	0	102	19	15.7	-	-	-	A	160144375	G	A	160144375	3	1	193	1	0	0	0	0	1	0	0	0	1135	1145	40	1	2207	1	ATP1A4	1	160144375	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09	45952493	160144375	89106246	2	11706										
KIF21B	0	genome.wustl.edu	37	chr1	200973473	200973474	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tggtcaccagatacctgttgINSccccccagcgaatcctggag							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	1	200973473	200973474	-	C	INS	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1011_1010	p.N338fs	0.760:1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	16	0	0	7	2	22.22	-	-	-	C	200973474	-	C	200973473	7	5	193	1	0	1	1	0	0	0	0	0	8341	1306	46	0	3975	0	KIF21B	1	200973473	Frame_Shift_Ins	INS	-	TCGA-A8-A08I-01A-11W-A019-09	40829098	200973473	48277148	3	11707										
BIN1	0	genome.wustl.edu	37	chr2	127827627	127827627	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ggtcagcagcgcctggtccaCcagcttctggtggtaatcca							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	2	127827627	127827627	C	-	DEL	BIN1	ENST00000316724	human	ensembl	69_37n	-1	known	frame_shift_del	c.355	p.V119fs	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717	60	0	0	3	2	40	-	-	-	-	127827627	C	-	127827627	7	5	193	1	0	1	0	1	0	0	0	0	1437	507	18	0	1535	0	BIN1	2	127827627	Frame_Shift_Del	DEL	C	TCGA-A8-A08I-01A-11W-A019-09		127827627	115371746	4	11708										
SCN2A	0	genome.wustl.edu	37	chr2	166152440	166152440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tgcagaagagaaagctaagaGacccaaacaggaacgcaagg	12	8	0	3			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	2	166152440	166152440	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.107	p.R36K	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	262	0	0	112	41	26.45	-	-	-	A	166152440	G	A	166152440	3	1	193	1	0	0	0	0	1	0	0	0	14004	942	33	2	109	2	SCN2A	2	166152440	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09	38324813	166152440	77046933	5	11709										
SCN10A	0	genome.wustl.edu	37	chr3	38739525	38739525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ggggctcagtgctctcctccGtggccacattgaagttctcc	11	14	3	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	3	38739525	38739525	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.5186	p.T1729M	0.996	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	570	1	0.17	316	86	21.34	-	-	-	A	38739525	G	A	38739525	3	1	193	1	0	0	0	0	1	0	0	0	14000	1145	40	1	688	1	SCN10A	3	38739525	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		38739525	159282905	6	11710										
FAM116A	0	genome.wustl.edu	37	chr3	57616502	57616502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	gctgaggtcctgttttctcaAgtgttttcataaattcttct	7	8	4	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	3	57616502	57616502	A	G	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1457	p.L486P	1.000	pfam_Afi1_N	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	253	0	0	151	47	23.74	-	-	-	G	57616502	A	G	57616502	3	3	193	1	0	0	0	0	1	0	0	0	5447	72	3	5	385	5	FAM116A	3	57616502	Missense_Mutation	SNP	A	TCGA-A8-A08I-01A-11W-A019-09	18876977	57616502	140405928	7	11711										
KBTBD8	0	genome.wustl.edu	37	chr3	67053690	67053690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	agttggtgttgaagctgaatCgatggatttagtgttgaact	13	3	0	3			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	3	67053690	67053690	C	T	SNP	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	missense	c.299	p.S100L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	600	0	0	143	40	21.86	-	-	-	T	67053690	C	T	67053690	3	4	193	1	0	0	0	0	1	0	0	0	8053	893	31	1	309	1	KBTBD8	3	67053690	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09	9437188	67053690	130968740	8	11712										
FILIP1L	0	genome.wustl.edu	37	chr3	99569408	99569408	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	gtttcctgagctcttccactTcagccatgataccagcgttt	7	13	2	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	3	99569408	99569408	T	A	SNP	FILIP1L	ENST00000354552	human	ensembl	69_37n	-1	known	missense	c.1112	p.E371V	1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	1608	0	0	776	225	22.46	-	-	-	A	99569408	T	A	99569408	3	1	193	1	0	0	0	0	1	0	0	0	5941	1783	62	5	2324	5	FILIP1L	3	99569408	Missense_Mutation	SNP	T	TCGA-A8-A08I-01A-11W-A019-09	32515718	99569408	98453022	9	11713										
ABCC5	0	genome.wustl.edu	37	chr3	183685546	183685546	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	acactgccacagattccaacCagtttaccctggacaaggca	7	14	0	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	3	183685546	183685546	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	silent	c.1770	p.L590	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	716	0	0	249	239	48.78	-	-	-	T	183685546	C	T	183685546	2	4	193	1	0	0	0	0	0	0	0	1	56	581	21	4		4	ABCC5	3	183685546	Silent	SNP	C	TCGA-A8-A08I-01A-11W-A019-09	84116138	183685546	14336884	10	11714										
PCDHAC2	0	genome.wustl.edu	37	chr5	140346876	140346876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	atagagagtgcgcaggacccCgacgtgggcgccaactcagt	14	12	1	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	5	140346876	140346876	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	silent	c.525	p.P175	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	41	0	0	12	4	25	-	-	-	T	140346876	C	T	140346876	2	4	193	1	0	0	0	0	0	0	0	1	11606	639	23	1		1	PCDHAC2	5	140346876	Silent	SNP	C	TCGA-A8-A08I-01A-11W-A019-09		140346876	40568384	11	11715										
HIST1H2AA	0	genome.wustl.edu	37	chr6	25726475	25726475	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	cgccgcccaaaagcttattgAgttcctcatcattgcggatc	8	13	2	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	6	25726475	25726475	A	G	SNP	HIST1H2AA	ENST00000297012	human	ensembl	69_37n	-1	known	missense	c.281	p.L94P	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508	304	0	0	198	57	22.35	-	-	-	G	25726475	A	G	25726475	3	3	193	1	0	0	0	0	1	0	0	0	7179	304	11	5	118	5	HIST1H2AA	6	25726475	Missense_Mutation	SNP	A	TCGA-A8-A08I-01A-11W-A019-09		25726475	145388592	12	11716										
TNFRSF21	0	genome.wustl.edu	37	chr6	47202423	47202423	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tacctttggtaataaaggaaCcgttcctgctcagcgcggag	11	10	1	0			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	6	47202423	47202423	C	A	SNP	TNFRSF21	ENST00000296861	human	ensembl	69_37n	-1	known	missense	c.1721	p.G574V	1.000	NULL	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_21,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	35	0	0	19	9	32.14	-	-	-	A	47202423	C	A	47202423	3	1	193	1	0	0	0	0	1	0	0	0	16390	507	18	4	254	4	TNFRSF21	6	47202423	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09	21475948	47202423	123912644	13	11717										
KCNH2	0	genome.wustl.edu	37	chr7	150648151	150648151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tgtggtagcgggctgtgcccGagtacagccgctggatgatg	17	9	0	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	7	150648151	150648151	G	A	SNP	KCNH2	ENST00000262186	human	ensembl	69_37n	-1	known	missense	c.2003	p.S668L	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	56	0	0	10	6	37.5	-	-	-	A	150648151	G	A	150648151	3	1	193	1	0	0	0	0	1	0	0	0	8086	1059	37	1	1777	1	KCNH2	7	150648151	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		150648151	8490512	14	11718										
FAM154A	0	genome.wustl.edu	37	chr9	18928791	18928791	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tcaaaggggatttcacagggCctgaacttctctgcttcatg	10	10	4	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	9	18928791	18928791	C	A	SNP	FAM154A	ENST00000380534	human	ensembl	69_37n	-1	known	missense	c.684	p.R228S	0.877	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	312	0	0	137	42	23.46	-	-	-	A	18928791	C	A	18928791	3	1	193	1	0	0	0	0	1	0	0	0	5503	738	26	4	744	4	FAM154A	9	18928791	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09		18928791	122284640	15	11719										
PCDH15	0	genome.wustl.edu	37	chr10	55782835	55782835	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	acaagttcatagtagtccctGacttctctgttaagcttcac	6	11	3	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	10	55782835	55782835	G	T	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	silent	c.2343	p.V781	0.084	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	563	0	0	183	52	21.94	-	-	-	T	55782835	G	T	55782835	2	4	193	1	0	0	0	0	0	0	0	1	11584	1277	45	2		2	PCDH15	10	55782835	Silent	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		55782835	79751912	16	11720										
NHLRC2	0	genome.wustl.edu	37	chr10	115661613	115661613	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	gagaaccgtttcactgaaagAtggagcagtgaagcacctcg	12	9	1	4			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	10	115661613	115661613	A	T	SNP	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	missense	c.1328	p.D443V	1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	636	0	0	231	81	25.96	-	-	-	T	115661613	A	T	115661613	3	4	193	1	0	0	0	0	1	0	0	0	10478	333	12	5	1354	5	NHLRC2	10	115661613	Missense_Mutation	SNP	A	TCGA-A8-A08I-01A-11W-A019-09	59878778	115661613	19873134	17	11721										
ZFPL1	0	genome.wustl.edu	37	chr11	64855582	64855582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tcacatccgcgtgggcccctCctgagcccccttgcttgtgg	11	17	1	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	11	64855582	64855582	C	T	SNP	ZFPL1	ENST00000294258	human	ensembl	69_37n	1	known	missense	c.929	p.S310F	1.000	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300	97	0	0	17	6	26.09	-	-	-	T	64855582	C	T	64855582	3	4	193	1	0	0	0	0	1	0	0	0	17752	855	30	2	955	2	ZFPL1	11	64855582	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09		64855582	70150934	18	11722										
C11orf1	0	genome.wustl.edu	37	chr11	111753281	111753281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	actggaaccaggaaagatatGacctgaggaatatcgtgcag	12	7	0	3			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	11	111753281	111753281	G	A	SNP	C11orf1	ENST00000260276	human	ensembl	69_37n	1	known	missense	c.235	p.D79N	0.960	pfam_UPF0686	pfam_UPF0686	-	no_errors	C11orf1	HGNC	ENSG00000137720	155	0	0	49	14	22.22	-	-	-	A	111753281	G	A	111753281	3	1	193	1	0	0	0	0	1	0	0	0	1639	1290	45	2	241	2	C11orf1	11	111753281	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09	46897699	111753281	23253235	19	11723										
IFT88	0	genome.wustl.edu	37	chr13	21172876	21172876	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	caagttatagtcaaaaataaGatgtttagcaatgcaggtaa	8	4	1	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	13	21172876	21172876	G	A	SNP	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	silent	c.708	p.K236	1.000	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	276	0	0	129	28	17.83	-	-	-	A	21172876	G	A	21172876	2	1	193	1	0	0	0	0	0	0	0	1	7620	933	33	2		2	IFT88	13	21172876	Silent	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		21172876	93997002	20	11724										
MTUS2	0	genome.wustl.edu	37	chr13	29600553	29600553	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	gtcccccttggtagttccacCccctactgatagtgcacgct	8	16	0	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	13	29600553	29600553	C	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	missense	c.1748	p.P583H	0.141	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	416	0	0	121	75	38.27	-	-	-	A	29600553	C	A	29600553	3	1	193	1	0	0	0	0	1	0	0	0	10038	623	22	4	1750	4	MTUS2	13	29600553	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09	8427677	29600553	85569325	21	11725										
USPL1	0	genome.wustl.edu	37	chr13	31195310	31195310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ccgaagattggaaatggtttGccagtgattggaccagggac	14	7	0	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	13	31195310	31195310	G	A	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	silent	c.33	p.L11	1.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	360	0	0	77	36	31.86	-	-	-	A	31195310	G	A	31195310	2	1	193	1	0	0	0	0	0	0	0	1	17189	1310	46	4		4	USPL1	13	31195310	Silent	SNP	G	TCGA-A8-A08I-01A-11W-A019-09	1594757	31195310	83974568	22	11726										
GPC5	0	genome.wustl.edu	37	chr13	92408591	92408591	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ctgtacaggtcattctatggAggtctagctgatcagctttg	11	8	4	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	13	92408591	92408591	A	C	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	silent	c.1197	p.G399	0.900	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	800	0	0	573	133	18.84	-	-	-	C	92408591	A	C	92408591	2	2	193	1	0	0	0	0	0	0	0	1	6651	291	11	5		5	GPC5	13	92408591	Silent	SNP	A	TCGA-A8-A08I-01A-11W-A019-09	61213281	92408591	22761287	23	11727										
NEK9	0	genome.wustl.edu	37	chr14	75584015	75584015	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	agctctggagacatgtaataTggggttcccacaagctgagc	12	9	1	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	14	75584015	75584015	T	C	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	silent	c.645	p.P215	0.991	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	321	0	0	168	31	15.58	-	-	-	C	75584015	T	C	75584015	2	2	193	1	0	0	0	0	0	0	0	1	10403	1451	51	5		5	NEK9	14	75584015	Silent	SNP	T	TCGA-A8-A08I-01A-11W-A019-09		75584015	31765525	24	11728										
FBN1	0	genome.wustl.edu	37	chr15	48719825	48719825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ttcttgaaagccacagtcccCtggaaagggcagatctcaca	9	12	2	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	15	48719825	48719825	C	T	SNP	FBN1	ENST00000559133	human	ensembl	69_37n	-1	known	missense	c.2512	p.G838R	0.999	NULL	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBN1	HGNC	ENSG00000166147	222	0	0	87	35	28.69	-	-	-	T	48719825	C	T	48719825	3	4	193	1	0	0	0	0	1	0	0	0	5748	680	24	4	1508	4	FBN1	15	48719825	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09		48719825	53811567	25	11729										
AMDHD2	0	genome.wustl.edu	37	chr16	2578618	2578619	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	gcatgccaggtggcccacgaINScccccccagagcctgccctc							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	16	2578618	2578619	-	C	INS	AMDHD2	ENST00000413459	human	ensembl	69_37n	1	known	frame_shift_ins	c.1028_1029	p.R346fs	0.000:0.000	pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	30	0	0	4	2	33.33	-	-	-	C	2578619	-	C	2578618	7	5	193	1	0	1	1	0	0	0	0	0	568	275	10	0	1058	0	AMDHD2	16	2578618	Frame_Shift_Ins	INS	-	TCGA-A8-A08I-01A-11W-A019-09		2578618	87776135	26	11730										
TP53	0	genome.wustl.edu	37	chr17	7578442	7578442	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	tcatgtgctgtgactgcttgTagatggccatggcgcggacg	15	9	1	2			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	17	7578442	7578442	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.488	p.Y163C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	165	0	0	26	39	60	-	-	-	C	7578442	T	C	7578442	3	2	193	1	0	0	0	0	1	0	0	0	16477	1638	57	5	810	5	TP53	17	7578442	Missense_Mutation	SNP	T	TCGA-A8-A08I-01A-11W-A019-09		7578442	73616768	27	11731										
ALOXE3	0	genome.wustl.edu	37	chr17	8012603	8012603	+	Frame_Shift_Del	DEL	A	A	-													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ggcagaaattggtgtaggtgAagtgggccaggcccgtgctc							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	17	8012603	8012603	A	-	DEL	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	frame_shift_del	c.1847	p.F616fs	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	65	0	0	11	2	15.38	-	-	-	-	8012603	A	-	8012603	7	5	193	1	0	1	0	1	0	0	0	0	542	246	9	0	704	0	ALOXE3	17	8012603	Frame_Shift_Del	DEL	A	TCGA-A8-A08I-01A-11W-A019-09	434161	8012603	73182607	28	11732										
SLC25A39	0	genome.wustl.edu	37	chr17	42397996	42397996	+	Frame_Shift_Del	DEL	T	T	-													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	cccagtccactcaccgtcccTgagatgccaccagccacaaa							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	17	42397996	42397996	T	-	DEL	SLC25A39	ENST00000377095	human	ensembl	69_37n	-1	known	frame_shift_del	c.795	p.T267fs	0.997	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A39	HGNC	ENSG00000013306	76	0	0	16	2	11.11	-	-	-	-	42397996	T	-	42397996	7	5	193	1	0	1	0	1	0	0	0	0	14592	1567	55	0	300	0	SLC25A39	17	42397996	Frame_Shift_Del	DEL	T	TCGA-A8-A08I-01A-11W-A019-09	34385393	42397996	38797214	29	11733										
UNC13D	0	genome.wustl.edu	37	chr17	73836376	73836377	+	Frame_Shift_Ins	INS	-	-	G													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ggtctcagtgcggggttccaINSgggggtaccactggtcctct							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	17	73836376	73836377	-	G	INS	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	frame_shift_ins	c.788_787	p.L263fs	1.000:0.974	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	UNC13D	HGNC	ENSG00000092929	21	0	0	4	2	33.33	-	-	-	G	73836377	-	G	73836376	7	5	193	1	0	1	1	0	0	0	0	0	17084	188	7	0	2576	0	UNC13D	17	73836376	Frame_Shift_Ins	INS	-	TCGA-A8-A08I-01A-11W-A019-09	31438380	73836376	7358834	30	11734										
WDR45L	0	genome.wustl.edu	37	chr17	80585138	80585140	+	In_Frame_Del	DEL	TCT	TCT	-													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	aaattctatttcaataacagTcttcttcttcaggtcatccc							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	17	80585138	80585140	TCT	-	DEL	WDR45L	ENST00000392325	human	ensembl	69_37n	-1	known	in_frame_del	c.274_272	p.K91in_frame_del	1.000:1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45L	HGNC	ENSG00000141580	506	0	0	91	77	45.03	-	-	-	-	80585140	TCT	-	80585138	7	5	193	1	0	1	0	1	0	0	0	0	17395	1667	58	0	788	0	WDR45L	17	80585138	In_Frame_Del	DEL	TCT	TCGA-A8-A08I-01A-11W-A019-09	6748762	80585138	610072	31	11735										
MYO9B	0	genome.wustl.edu	37	chr19	17313052	17313052	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	aacctggtcctcaacctcttCcagtcactgctagatgagtt							TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	19	17313052	17313052	C	-	DEL	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	frame_shift_del	c.4776	p.Q1593fs	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	49	0	0	2	4	57.14	-	-	-	-	17313052	C	-	17313052	7	5	193	1	0	1	0	1	0	0	0	0	10157	854	30	0	4882	0	MYO9B	19	17313052	Frame_Shift_Del	DEL	C	TCGA-A8-A08I-01A-11W-A019-09		17313052	41815931	32	11736										
RYR1	0	genome.wustl.edu	37	chr19	38976819	38976819	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	agttccagtttgtgcctgtgCtcaagctcgtgtccaccctg	10	13	1	0			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	19	38976819	38976819	C	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.5524	p.L1842V	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	391	0	0	139	37	20.9	-	-	-	G	38976819	C	G	38976819	3	3	193	1	0	0	0	0	1	0	0	0	13854	797	28	4	5658	4	RYR1	19	38976819	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09	21663767	38976819	20152164	33	11737										
C2CD2	0	genome.wustl.edu	37	chr21	43321826	43321826	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ctgtcgaatggccacttcagCcactggatccgaaccattca	8	14	2	0			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	21	43321826	43321826	C	G	SNP	C2CD2	ENST00000380486	human	ensembl	69_37n	-1	known	missense	c.1465	p.A489P	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2	HGNC	ENSG00000157617	237	0	0	54	7	11.48	-	-	-	G	43321826	C	G	43321826	3	3	193	1	0	0	0	0	1	0	0	0	2172	739	26	4	637	4	C2CD2	21	43321826	Missense_Mutation	SNP	C	TCGA-A8-A08I-01A-11W-A019-09		43321826	4808069	34	11738										
HEPH	0	genome.wustl.edu	37	chrX	65392232	65392232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	cttaaagtctgacaagaaccGgatagggggaacctacaaga	11	8	1	3			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	X	65392232	65392232	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.365	p.R122Q	0.983	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	362	0	0	138	106	43.44	-	-	-	A	65392232	G	A	65392232	3	1	193	1	0	0	0	0	1	0	0	0	7105	1116	39	1	375	1	HEPH	23	65392232	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09		65392232	89878328	35	11739										
SAGE1	0	genome.wustl.edu	37	chrX	134991157	134991157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.798404374297039	1.24390243902439	0	1.40975609756098	0.142857142857143	0.62934362934363	0	ttccatccatgagtaccaagGatctgtgtatgtctgttaat	8	8	2	1			TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4525400d-0a2c-4cc7-9c71-9ad6d9faf93f	7e92cfa5-68b6-4dd5-a911-b3a0f44a1635	X	134991157	134991157	G	A	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.1576	p.D526N	0.007	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	343	1	0.29	140	27	16.17	-	-	-	A	134991157	G	A	134991157	3	1	193	1	0	0	0	0	1	0	0	0	13895	1174	41	2	1622	2	SAGE1	23	134991157	Missense_Mutation	SNP	G	TCGA-A8-A08I-01A-11W-A019-09	69598925	134991157	20279403	36	11740										
CLCN6	0	genome.wustl.edu	37	chr1	11888625	11888625	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	gccacattcaactgtctgaaCaagaggcttgcaaagtaccg	9	11	2	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	1	11888625	11888625	C	G	SNP	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	missense	c.1065	p.N355K	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	226	0	0	201	45	18.22	-	-	-	G	11888625	C	G	11888625	3	3	194	1	0	0	0	0	1	0	0	0	3497	477	17	4	1121	4	CLCN6	1	11888625	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		11888625	237361996	1	11741										
PHACTR4	0	genome.wustl.edu	37	chr1	28802626	28802626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	gttaatttgttagtccagacGatgaagaagaagaggagcaa	12	4	0	5			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	1	28802626	28802626	G	A	SNP	PHACTR4	ENST00000373836	human	ensembl	69_37n	1	known	missense	c.1459	p.D487N	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138	189	0	0	145	33	18.54	-	-	-	A	28802626	G	A	28802626	3	1	194	1	0	0	0	0	1	0	0	0	11886	1058	37	1	1505	1	PHACTR4	1	28802626	Missense_Mutation	SNP	G	TCGA-A8-A08J-01A-11W-A019-09	16914001	28802626	220447995	2	11742										
NME7	0	genome.wustl.edu	37	chr1	169272390	169272390	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	attaaggacctacttgaaaaAgggtcttgactggtgatcta	10	6	2	3			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	1	169272390	169272390	A	C	SNP	NME7	ENST00000367811	human	ensembl	69_37n	-1	known	missense	c.433	p.F145V	0.994	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	140	0	0	77	61	44.2	-	-	-	C	169272390	A	C	169272390	3	2	194	1	0	0	0	0	1	0	0	0	10568	72	3	5	729	5	NME7	1	169272390	Missense_Mutation	SNP	A	TCGA-A8-A08J-01A-11W-A019-09	140469764	169272390	79978231	3	11743										
CLASP1	0	genome.wustl.edu	37	chr2	122122750	122122750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	gacaccaaggctgtcttcccGcgtgatcttgagcagctcca	10	14	2	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	2	122122750	122122750	G	A	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	missense	c.3997	p.R1333W	0.929	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	55	0	0	54	7	11.48	-	-	-	A	122122750	G	A	122122750	3	1	194	1	0	0	0	0	1	0	0	0	3484	1086	38	1	639	1	CLASP1	2	122122750	Missense_Mutation	SNP	G	TCGA-A8-A08J-01A-11W-A019-09		122122750	121076623	4	11744										
KBTBD10	0	genome.wustl.edu	37	chr2	170367168	170367168	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tacttcctggttacctgaatGacattcccaggcatggaatg	9	10	0	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	2	170367168	170367168	G	A	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	missense	c.880	p.D294N	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	92	0	0	78	25	24.27	-	-	-	A	170367168	G	A	170367168	3	1	194	1	0	0	0	0	1	0	0	0	8044	1290	45	2	882	2	KBTBD10	2	170367168	Missense_Mutation	SNP	G	TCGA-A8-A08J-01A-11W-A019-09	48244418	170367168	72832205	5	11745										
EDEM1	0	genome.wustl.edu	37	chr3	5252828	5252828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tgggtacgccacgctgcatcAcgtcattgacaagtccacag	10	13	2	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	3	5252828	5252828	A	G	SNP	EDEM1	ENST00000256497	human	ensembl	69_37n	1	known	missense	c.1607	p.H536R	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109	46	0	0	60	17	22.08	-	-	-	G	5252828	A	G	5252828	3	3	194	1	0	0	0	0	1	0	0	0	4946	159	6	5	1645	5	EDEM1	3	5252828	Missense_Mutation	SNP	A	TCGA-A8-A08J-01A-11W-A019-09		5252828	192769602	6	11746										
LDB2	0	genome.wustl.edu	37	chr4	16597474	16597474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	caaacacagtgctaaagtaaCgggggatgagggtcctgccg	14	9	0	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	4	16597474	16597474	C	T	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.260	p.R87H	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	70	0	0	49	54	50.47	-	-	-	T	16597474	C	T	16597474	3	4	194	1	0	0	0	0	1	0	0	0	8750	536	19	1	994	1	LDB2	4	16597474	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		16597474	174556802	7	11747										
THAP9	0	genome.wustl.edu	37	chr4	83826044	83826045	+	In_Frame_Ins	INS	-	-	GCT													0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tcatatggcataagaagaaaINSgctgaaaaaaggagctgtgc							TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	4	83826044	83826045	-	GCT	INS	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	in_frame_ins	c.236_237	p.81in_frame_insL	1.000:0.997	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	118	0	0	57	29	33.72	-	-	-	GCT	83826045	-	GCT	83826044	7	5	194	1	0	1	1	0	0	0	0	0	15946	72	3	0	242	0	THAP9	4	83826044	In_Frame_Ins	INS	-	TCGA-A8-A08J-01A-11W-A019-09	67228570	83826044	107328232	8	11748										
CITED2	0	genome.wustl.edu	37	chr6	139694830	139694831	+	Frame_Shift_Ins	INS	-	-	G													0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ccgcgggggccagcgcgctcINSggggggtgccctccgttcac							TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	6	139694830	139694831	-	G	INS	CITED2	ENST00000367651	human	ensembl	69_37n	-1	known	frame_shift_ins	c.252_251	p.S85fs	0.699:0.771	pfam_CITED	pfam_CITED	-	no_errors	CITED2	HGNC	ENSG00000164442	14	0	0	5	3	37.5	-	-	-	G	139694831	-	G	139694830	7	5	194	1	0	1	1	0	0	0	0	0	3470	871	31	0	564	0	CITED2	6	139694830	Frame_Shift_Ins	INS	-	TCGA-A8-A08J-01A-11W-A019-09		139694830	31420237	9	11749										
THSD7A	0	genome.wustl.edu	37	chr7	11675946	11675946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tttcccgttctttattcttcCcgcgtctccttgcttgtctt	5	14	4	0			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	7	11675946	11675946	C	G	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.833	p.G278A	0.475	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	169	0	0	150	22	12.79	-	-	-	G	11675946	C	G	11675946	3	3	194	1	0	0	0	0	1	0	0	0	15974	623	22	4	4244	4	THSD7A	7	11675946	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		11675946	147462717	10	11750										
ABCA13	0	genome.wustl.edu	37	chr7	48260896	48260897	+	Frame_Shift_Ins	INS	-	-	T													0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	gattcttcttatggttccagINStttttttacagtaagtatct							TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	7	48260896	48260897	-	T	INS	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	frame_shift_ins	c.458_459	p.T156fs	0.915:0.933	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	12	0	0	14	2	12.5	-	-	-	T	48260897	-	T	48260896	7	5	194	1	0	1	1	0	0	0	0	0	31	1029	36	0	305	0	ABCA13	7	48260896	Frame_Shift_Ins	INS	-	TCGA-A8-A08J-01A-11W-A019-09	36584950	48260896	110877767	11	11751										
SLC12A9	0	genome.wustl.edu	37	chr7	100459398	100459398	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ggctggacgtccggaaggatCacgtgaagttctggcggccc	16	11	2	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	7	100459398	100459398	C	A	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	1	known	missense	c.1576	p.H526N	0.999	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	47	0	0	32	20	38.46	-	-	-	A	100459398	C	A	100459398	3	1	194	1	0	0	0	0	1	0	0	0	14479	826	29	2	1618	2	SLC12A9	7	100459398	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09	52198502	100459398	58679265	12	11752										
ZNF658	0	genome.wustl.edu	37	chr9	40773310	40773310	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tcattacattcatagggtttCtcccctgtgtgaattctttg	7	9	4	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	9	40773310	40773310	C	T	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	silent	c.1965	p.E655	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	561	0	0	381	121	24.1	-	-	-	T	40773310	C	T	40773310	2	4	194	1	0	0	0	0	0	0	0	1	18165	912	32	2		2	ZNF658	9	40773310	Silent	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		40773310	100440121	13	11753										
GATA3	0	genome.wustl.edu	37	chr10	8115926	8115927	+	Frame_Shift_Ins	INS	-	-	C													0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	cgcccacgccgatgcacccgINSccatccagcctgtcctttgg							TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	10	8115926	8115927	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1275_1276	p.S426fs	0.639:0.969	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	76	0	0	79	86	52.12	-	-	-	C	8115927	-	C	8115926	7	5	194	1	0	1	1	0	0	0	0	0	6305	1074	38	0	1293	0	GATA3	10	8115926	Frame_Shift_Ins	INS	-	TCGA-A8-A08J-01A-11W-A019-09		8115926	127418821	14	11754										
ACACB	0	genome.wustl.edu	37	chr12	109637223	109637223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ccagttaccgaattaccatcGgcaataagacgtgtgtgttt	9	9	0	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	12	109637223	109637223	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.2644	p.G882C	1.000	superfamily_Single_hybrid_motif	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	86	0	0	98	60	37.97	-	-	-	T	109637223	G	T	109637223	3	4	194	1	0	0	0	0	1	0	0	0	107	1116	39	3	2710	3	ACACB	12	109637223	Missense_Mutation	SNP	G	TCGA-A8-A08J-01A-11W-A019-09		109637223	24214672	15	11755										
ZC3H13	0	genome.wustl.edu	37	chr13	46544025	46544025	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	cctctttccatctaccctgtCtgtcttctgtgaggtgcgag	9	13	5	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	13	46544025	46544025	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.2654	p.R885K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	752	0	0	722	108	13	-	-	-	T	46544025	C	T	46544025	3	4	194	1	0	0	0	0	1	0	0	0	17661	913	32	2	2056	2	ZC3H13	13	46544025	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		46544025	68625853	16	11756										
ERN2	0	genome.wustl.edu	37	chr16	23713958	23713958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ttcttaccaccagggccactCctgtgtggaccagtgcttta	9	13	1	0			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	16	23713958	23713958	C	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.1064	p.G355E	1.000	NULL	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	105	1	0.93	81	33	28.95	-	-	-	T	23713958	C	T	23713958	3	4	194	1	0	0	0	0	1	0	0	0	5275	855	30	2	1916	2	ERN2	16	23713958	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		23713958	66640795	17	11757										
NLGN2	0	genome.wustl.edu	37	chr17	7318874	7318874	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ggtggatggcgacgtggtccCcgatgaccctgagatcctca	14	12	1	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	17	7318874	7318874	C	A	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.1082	p.P361H	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	35	0	0	28	13	31.71	-	-	-	A	7318874	C	A	7318874	3	1	194	1	0	0	0	0	1	0	0	0	10534	623	22	4	1104	4	NLGN2	17	7318874	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		7318874	73876336	18	11758										
ABCA8	0	genome.wustl.edu	37	chr17	66872768	66872768	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	aacaccaagccctgcccgtaCctttctctttattccctctg	4	17	2	0			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	17	66872768	66872768	C	A	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	splice_site	c.4275+1	e32+1	1.000	-	-	-	no_errors	ABCA8	HGNC	ENSG00000141338	224	0	0	189	98	34.03	-	-	-	A	66872768	C	A	66872768	5	1	194	1	0	0	0	0	0	0	1	0	38	521	18	4	617	4	ABCA8	17	66872768	Splice_Site	SNP	C	TCGA-A8-A08J-01A-11W-A019-09	59553894	66872768	14322442	19	11759										
SLC16A5	0	genome.wustl.edu	37	chr17	73100132	73100132	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tccagcttcttcctcatctcAgctgccctcttcatgggtgg	8	15	5	0			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	17	73100132	73100132	A	C	SNP	SLC16A5	ENST00000329783	human	ensembl	69_37n	1	known	silent	c.1221	p.S407	0.042	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	55	0	0	67	16	19.28	-	-	-	C	73100132	A	C	73100132	2	2	194	1	0	0	0	0	0	0	0	1	14500	175	7	5		5	SLC16A5	17	73100132	Silent	SNP	A	TCGA-A8-A08J-01A-11W-A019-09	6227364	73100132	8095078	20	11760										
S1PR4	0	genome.wustl.edu	37	chr19	3179623	3179623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	gctggccgacgtctttggctCcaacctctgggcccaggagt	13	14	2	0			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	19	3179623	3179623	C	T	SNP	S1PR4	ENST00000246115	human	ensembl	69_37n	1	known	missense	c.833	p.S278F	0.989	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG6_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG6_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR4	HGNC	ENSG00000125910	20	0	0	12	4	25	-	-	-	T	3179623	C	T	3179623	3	4	194	1	0	0	0	0	1	0	0	0	13882	855	30	2	835	2	S1PR4	19	3179623	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09		3179623	55949360	21	11761										
RASGRP4	0	genome.wustl.edu	37	chr19	38911748	38911748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	aggatatgaggtcagcaggcGggcagccaggtcggcggacg	19	9	1	1			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	19	38911748	38911748	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	missense	c.301	p.R101C	0.999	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	56	0	0	53	14	20.9	-	-	-	A	38911748	G	A	38911748	3	1	194	1	0	0	0	0	1	0	0	0	13160	1116	39	1	1780	1	RASGRP4	19	38911748	Missense_Mutation	SNP	G	TCGA-A8-A08J-01A-11W-A019-09	35732125	38911748	20217235	22	11762										
B9D2	0	genome.wustl.edu	37	chr19	41863814	41863814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	atacccaccttgaagaccttTggtggcgaagtgcaggtcga	12	10	0	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	19	41863814	41863814	T	C	SNP	B9D2	ENST00000243578	human	ensembl	69_37n	-1	known	missense	c.202	p.K68E	1.000	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810	35	0	0	26	6	18.75	-	-	-	C	41863814	T	C	41863814	3	2	194	1	0	0	0	0	1	0	0	0	1282	1821	63	5	333	5	B9D2	19	41863814	Missense_Mutation	SNP	T	TCGA-A8-A08J-01A-11W-A019-09	2952066	41863814	17265169	23	11763										
LBP	0	genome.wustl.edu	37	chr20	36993284	36993284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	ttaccctccttgctgcagtcAtgagccttcctgaggaacac	8	14	1	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	20	36993284	36993284	A	G	SNP	LBP	ENST00000217407	human	ensembl	69_37n	1	known	missense	c.799	p.M267V	0.114	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	LBP	HGNC	ENSG00000129988	98	0	0	270	47	14.83	-	-	-	G	36993284	A	G	36993284	3	3	194	1	0	0	0	0	1	0	0	0	8705	217	8	5	829	5	LBP	20	36993284	Missense_Mutation	SNP	A	TCGA-A8-A08J-01A-11W-A019-09		36993284	26032236	24	11764										
PPP2R3B	0	genome.wustl.edu	37	chrX	302052	302052	+	Frame_Shift_Del	DEL	T	T	-													0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	aggaacccacctggtcggtgTttttttgtcttcctcagaga							TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	X	302052	302052	T	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	69_37n	-1	known	frame_shift_del	c.1165	p.T389fs	1.000	pfscan_EF_HAND_2	pfscan_EF_HAND_2	-	no_errors	PPP2R3B	HGNC	ENSG00000167393	8	0	0	3	2	33.33	-	-	-	-	302052	T	-	302052	7	5	194	1	0	1	0	1	0	0	0	0	12466	1725	60	0	582	0	PPP2R3B	23	302052	Frame_Shift_Del	DEL	T	TCGA-A8-A08J-01A-11W-A019-09		302052	154968508	25	11765										
ARMCX5	0	genome.wustl.edu	37	chrX	101858458	101858458	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.535437381472753	1.8236092265943	0	2.22885572139303	0.142857142857143	0.62934362934363	0	tcgtgtttgtctaaaaatcaCgccaatacaagagaattgat	7	7	2	2			TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae458901-e900-4aaa-bde6-3eda8912fbd5	b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b	X	101858458	101858458	C	A	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	missense	c.1389	p.H463Q	0.175	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	605	1	0.17	475	121	20.3	-	-	-	A	101858458	C	A	101858458	3	1	194	1	0	0	0	0	1	0	0	0	966	535	19	3	1391	3	ARMCX5	23	101858458	Missense_Mutation	SNP	C	TCGA-A8-A08J-01A-11W-A019-09	101556406	101858458	53412102	26	11766										
TMCO4	0	genome.wustl.edu	37	chr1	20066416	20066416	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tcgatgacattggcgacactGaggagtgaggctggccaggt	16	8	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	20066416	20066416	G	A	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	silent	c.1080	p.L360	0.955	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	33	0	0	14	11	42.31	-	-	-	A	20066416	G	A	20066416	2	1	195	1	0	0	0	0	0	0	0	1	16093	1277	45	2		2	TMCO4	1	20066416	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		20066416	229184205	1	11767										
TCEA3	0	genome.wustl.edu	37	chr1	23743853	23743853	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgccttttctctttcctctCctttttctccttttgggggt	6	12	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	23743853	23743853	C	A	SNP	TCEA3	ENST00000450454	human	ensembl	69_37n	-1	known	missense	c.269	p.G90V	1.000	superfamily_TFIIS_N,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA3	HGNC	ENSG00000204219	83	0	0	48	37	43.02	-	-	-	A	23743853	C	A	23743853	3	1	195	1	0	0	0	0	1	0	0	0	15764	855	30	2	809	2	TCEA3	1	23743853	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3677437	23743853	225506768	2	11768										
GJB3	0	genome.wustl.edu	37	chr1	35250839	35250839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctggcatggcttcaatatgcCgcgcctggtgcagtgtgcca	13	12	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	35250839	35250839	C	T	SNP	GJB3	ENST00000373362	human	ensembl	69_37n	1	known	missense	c.476	p.P159L	0.999	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910	155	0	0	32	34	50.75	-	-	-	T	35250839	C	T	35250839	3	4	195	1	0	0	0	0	1	0	0	0	6461	652	23	1	478	1	GJB3	1	35250839	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	11506986	35250839	213999782	3	11769										
SLC6A9	0	genome.wustl.edu	37	chr1	44463290	44463290	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tctgcgccttgtccgggtgcAgtggctggacctcgaagccg	15	13	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	44463290	44463290	A	T	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.2048	p.L683Q	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	65	0	0	8	5	38.46	-	-	-	T	44463290	A	T	44463290	3	4	195	1	0	0	0	0	1	0	0	0	14780	188	7	5	76	5	SLC6A9	1	44463290	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	9212451	44463290	204787331	4	11770										
DAB1	0	genome.wustl.edu	37	chr1	57537961	57537961	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gatagggatactcaccgcctGggctgtttttatggccacaa	11	10	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	57537961	57537961	G	T	SNP	DAB1	ENST00000371231	human	ensembl	69_37n	-1	known	missense	c.433	p.Q145K	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB1	HGNC	ENSG00000173406	143	0	0	138	65	31.86	-	-	-	T	57537961	G	T	57537961	3	4	195	1	0	0	0	0	1	0	0	0	4249	1357	47	4	1274	4	DAB1	1	57537961	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	13074671	57537961	191712660	5	11771										
SLC44A5	0	genome.wustl.edu	37	chr1	75862283	75862283	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cttaccaaagtcctcttcctCagagggagtatctgctggtt	9	11	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	75862283	75862283	C	G	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	missense	c.37	p.E13Q	0.005	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	216	0	0	183	67	26.8	-	-	-	G	75862283	C	G	75862283	3	3	195	1	0	0	0	0	1	0	0	0	14728	835	29	2	2321	2	SLC44A5	1	75862283	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	18324322	75862283	173388338	6	11772										
CCBL2	0	genome.wustl.edu	37	chr1	89430521	89430521	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aatatacttacttcatctccCtcatcaattaatgcttgaat	2	10	4	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	89430521	89430521	C	G	SNP	CCBL2	ENST00000260508	human	ensembl	69_37n	-1	known	missense	c.444	p.E148D	0.998	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CCBL2	HGNC	ENSG00000137944	126	0	0	66	73	52.52	-	-	-	G	89430521	C	G	89430521	3	3	195	1	0	0	0	0	1	0	0	0	2758	680	24	4	960	4	CCBL2	1	89430521	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	13568238	89430521	159820100	7	11773										
RPAP2	0	genome.wustl.edu	37	chr1	92789796	92789796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tttaccttttaggggctcagGtacagccattaaaccactgc	8	11	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	92789796	92789796	G	A	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	missense	c.1319	p.G440D	0.690	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	131	0	0	68	99	59.28	-	-	-	A	92789796	G	A	92789796	3	1	195	1	0	0	0	0	1	0	0	0	13628	1261	44	4	1349	4	RPAP2	1	92789796	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	3359275	92789796	156460825	8	11774										
AMY2A	0	genome.wustl.edu	37	chr1	104161640	104161640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaccctggaagtagggacttTccagcagtcccatattctgg	10	11	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	104161640	104161640	T	C	SNP	AMY2A	ENST00000423678	human	ensembl	69_37n	1	putative	missense	c.418	p.S140P	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AMY2A	HGNC	ENSG00000243480	106	0	0	84	99	53.8	-	-	-	C	104161640	T	C	104161640	3	2	195	1	0	0	0	0	1	0	0	0	594	1780	62	5	433	5	AMY2A	1	104161640	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	11371844	104161640	145088981	9	11775										
MYBPHL	0	genome.wustl.edu	37	chr1	109839776	109839776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agcgctgaagccccaaacgtCcaccagcttaatactctgag	8	14	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	109839776	109839776	C	A	SNP	MYBPHL	ENST00000357155	human	ensembl	69_37n	-1	known	missense	c.466	p.D156Y	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPHL	HGNC	ENSG00000221986	254	1	0.39	45	58	56.31	-	-	-	A	109839776	C	A	109839776	3	1	195	1	0	0	0	0	1	0	0	0	10087	855	30	2	618	2	MYBPHL	1	109839776	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5678136	109839776	139410845	10	11776										
ANKRD35	0	genome.wustl.edu	37	chr1	145562092	145562092	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gggttcctggggctcgaggaGagcctctaggggcccttgga	18	10	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	145562092	145562092	G	C	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	missense	c.1780	p.E594Q	0.903	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	61	0	0	15	9	37.5	-	-	-	C	145562092	G	C	145562092	3	2	195	1	0	0	0	0	1	0	0	0	663	943	33	2	1818	2	ANKRD35	1	145562092	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	35722316	145562092	103688529	11	11777										
POLR3C	0	genome.wustl.edu	37	chr1	145594157	145594157	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgcatagatgcaatgatggCttctaccctctgagattttt	8	9	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	145594157	145594157	C	A	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.1405	p.A469S	1.000	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	218	0	0	114	62	35.23	-	-	-	A	145594157	C	A	145594157	3	1	195	1	0	0	0	0	1	0	0	0	12304	797	28	4	207	4	POLR3C	1	145594157	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	32065	145594157	103656464	12	11778										
CHD1L	0	genome.wustl.edu	37	chr1	146757043	146757043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agggatctaccaaaaggaagCgggttctgagtccagaagag	14	7	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	146757043	146757043	C	T	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.1897	p.R633W	0.936	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	465	1	0.21	598	186	23.57	-	-	-	T	146757043	C	T	146757043	3	4	195	1	0	0	0	0	1	0	0	0	3353	759	27	1	1963	1	CHD1L	1	146757043	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1162886	146757043	102493578	13	11779										
TARS2	0	genome.wustl.edu	37	chr1	150471122	150471122	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagcaggatgacgctcacatCttctgtacaacagatcaggt	9	11	4	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	150471122	150471122	C	G	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.1383	p.I461M	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	172	0	0	163	48	22.64	-	-	-	G	150471122	C	G	150471122	3	3	195	1	0	0	0	0	1	0	0	0	15652	903	32	2	1425	2	TARS2	1	150471122	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3714079	150471122	98779499	14	11780										
S100A7A	0	genome.wustl.edu	37	chr1	153391682	153391682	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaaggacaagaatgaggataAgaagattgatttttctgagt	11	2	1	6			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	153391682	153391682	A	C	SNP	S100A7A	ENST00000329256	human	ensembl	69_37n	1	known	missense	c.203	p.K68T	0.007	pfscan_EF_HAND_2	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	S100A7A	HGNC	ENSG00000184330	152	0	0	199	86	30.07	-	-	-	C	153391682	A	C	153391682	3	2	195	1	0	0	0	0	1	0	0	0	13870	72	3	5	209	5	S100A7A	1	153391682	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	2920560	153391682	95858939	15	11781										
NPR1	0	genome.wustl.edu	37	chr1	153659779	153659779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctcaagatcaccgactatgGgctggagagcttcagggacc	13	11	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	153659779	153659779	G	T	SNP	NPR1	ENST00000368680	human	ensembl	69_37n	1	known	missense	c.2039	p.G680V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	203	0	0	131	45	25.57	-	-	-	T	153659779	G	T	153659779	3	4	195	1	0	0	0	0	1	0	0	0	10667	1232	43	4	2089	4	NPR1	1	153659779	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	268097	153659779	95590842	16	11782										
KIRREL	0	genome.wustl.edu	37	chr1	158058209	158058209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tctgggttgggaatccccccCtcactctcacctggaccaaa	8	16	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	158058209	158058209	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.1009	p.L337F	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	331	0	0	146	77	34.38	-	-	-	T	158058209	C	T	158058209	3	4	195	1	0	0	0	0	1	0	0	0	8377	681	24	4	1039	4	KIRREL	1	158058209	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	4398430	158058209	91192412	17	11783										
OR10X1	0	genome.wustl.edu	37	chr1	158548883	158548883	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaataaacaatagatgcaaaAccaaagtggattataaccac	5	7	0	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	158548883	158548883	A	C	SNP	OR10X1	ENST00000368150	human	ensembl	69_37n	-1	known	silent	c.807	p.G269	0.023	pfam_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400	220	0	0	226	92	28.93	-	-	-	C	158548883	A	C	158548883	2	2	195	1	0	0	0	0	0	0	0	1	10995	30	2	5		5	OR10X1	1	158548883	Silent	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	490674	158548883	90701738	18	11784										
ATP1A4	0	genome.wustl.edu	37	chr1	160123015	160123015	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	actccgtggacctgacaaagGtgagtaagaagctccctgag	12	10	0	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	160123015	160123015	G	T	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	splice_site	c.207+1	e2+1	1.000	-	-	-	no_errors	ATP1A4	HGNC	ENSG00000132681	191	0	0	157	56	26.29	-	-	-	T	160123015	G	T	160123015	5	4	195	1	0	0	0	0	0	0	1	0	1135	1275	44	4	214	4	ATP1A4	1	160123015	Splice_Site	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	1574132	160123015	89127606	19	11785										
CASQ1	0	genome.wustl.edu	37	chr1	160165757	160165757	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cttcatggaagagcctgtgaCcatcccagacaagcccaata	8	13	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	160165757	160165757	C	G	SNP	CASQ1	ENST00000368078	human	ensembl	69_37n	1	known	missense	c.722	p.T241S	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318	131	0	0	63	69	52.27	-	-	-	G	160165757	C	G	160165757	3	3	195	1	0	0	0	0	1	0	0	0	2705	507	18	4	744	4	CASQ1	1	160165757	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	42742	160165757	89084864	20	11786										
CD244	0	genome.wustl.edu	37	chr1	160811287	160811287	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caactttatctggaagcagaGattctgatcagaaaggcatt	9	7	3	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	160811287	160811287	G	T	SNP	CD244	ENST00000368033	human	ensembl	69_37n	-1	known	missense	c.383	p.S128Y	1.000	NULL	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like	-	no_errors	CD244	HGNC	ENSG00000122223	108	1	0.92	152	65	29.82	-	-	-	T	160811287	G	T	160811287	3	4	195	1	0	0	0	0	1	0	0	0	3016	942	33	2	757	2	CD244	1	160811287	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	645530	160811287	88439334	21	11787										
ATF6	0	genome.wustl.edu	37	chr1	161789606	161789606	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agctggatgaagttgtgtcaGaggtaagtgttagtaatacg	14	3	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	161789606	161789606	G	C	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	missense	c.1093	p.E365Q	0.999	pfam_bZIP_1,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	103	0	0	199	66	24.91	-	-	-	C	161789606	G	C	161789606	3	2	195	1	0	0	0	0	1	0	0	0	1088	943	33	2	1123	2	ATF6	1	161789606	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	978319	161789606	87461015	22	11788										
HMCN1	0	genome.wustl.edu	37	chr1	186024717	186024717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tcacatccttcagctgaagaAcattcatgtatctgacacag	6	11	4	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	186024717	186024717	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.7055	p.N2352S	0.425	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	412	1	0.24	295	254	46.27	-	-	-	G	186024717	A	G	186024717	3	3	195	1	0	0	0	0	1	0	0	0	7271	43	2	5	7233	5	HMCN1	1	186024717	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	24235111	186024717	63225904	23	11789										
SYT2	0	genome.wustl.edu	37	chr1	202571101	202571101	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gttcataggcacctttacctCtccaatgatgtcatgtttgg	8	10	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	202571101	202571101	C	G	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	missense	c.718	p.E240Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	254	0	0	225	48	17.58	-	-	-	G	202571101	C	G	202571101	3	3	195	1	0	0	0	0	1	0	0	0	15566	922	32	2	557	2	SYT2	1	202571101	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	16546384	202571101	46679520	24	11790										
CR2	0	genome.wustl.edu	37	chr1	207644373	207644373	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gaagctacaggaaggcaactCttgacaaaaccccagcacca	8	13	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	207644373	207644373	C	G	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	silent	c.1434	p.L478	0.133	superfamily_Complement_control_module,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	279	0	0	330	92	21.8	-	-	-	G	207644373	C	G	207644373	2	3	195	1	0	0	0	0	0	0	0	1	3872	900	32	2		2	CR2	1	207644373	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5073272	207644373	41606248	25	11791										
KCNK2	0	genome.wustl.edu	37	chr1	215408280	215408280	+	Frame_Shift_Del	DEL	C	C	-													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttatgacaagttccagcgggCcacctccatcaagcggaagc							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	215408280	215408280	C	-	DEL	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	frame_shift_del	c.1073	p.T359fs	1.000	prints_2pore_dom_K_chnl_TREK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	164	0	0	229	67	22.19	-	-	-	-	215408280	C	-	215408280	7	5	195	1	0	1	0	1	0	0	0	0	8120	739	26	0	1142	0	KCNK2	1	215408280	Frame_Shift_Del	DEL	C	TCGA-A8-A08L-01A-11W-A019-09	7763907	215408280	33842341	26	11792	140	2								
KCNK2	0	genome.wustl.edu	37	chr1	215408281	215408281	+	Silent	SNP	C	C	G													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tatgacaagttccagcgggcCacctccatcaagcggaagct							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	215408281	215408281	C	G	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	silent	c.1074	p.A358	1.000	prints_2pore_dom_K_chnl_TREK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	168	0	0	234	68	22.37	-	-	-	G	215408281	C	G	215408281	2	3	195	1	0	0	0	0	0	0	0	1	8120	581	21	4		4	KCNK2	1	215408281	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1	215408281	33842340	27	11793	140	2								
RYR2	0	genome.wustl.edu	37	chr1	237659960	237659960	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggcttccactgaaggatattCtccctaccctggagggggcg	13	12	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	237659960	237659960	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2105	p.S702F	0.863	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	127	0	0	210	47	18.22	-	-	-	T	237659960	C	T	237659960	3	4	195	1	0	0	0	0	1	0	0	0	13855	913	32	2	2189	2	RYR2	1	237659960	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	22251679	237659960	11590661	28	11794										
RYR2	0	genome.wustl.edu	37	chr1	237777665	237777665	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccctgatgagaacaaaaaacAcggccttccagggatcggcc	10	13	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	237777665	237777665	A	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5231	p.H1744R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	288	0	0	450	115	20.35	-	-	-	G	237777665	A	G	237777665	3	3	195	1	0	0	0	0	1	0	0	0	13855	159	6	5	5383	5	RYR2	1	237777665	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	117705	237777665	11472956	29	11795										
RYR2	0	genome.wustl.edu	37	chr1	237791164	237791164	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atgggctcaggagtctgtcaTtgaagaccccgagctggtga	14	9	3	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	237791164	237791164	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.6218	p.I2073T	0.997	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	57	0	0	104	31	22.96	-	-	-	C	237791164	T	C	237791164	3	2	195	1	0	0	0	0	1	0	0	0	13855	1493	52	5	6386	5	RYR2	1	237791164	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	13499	237791164	11459457	30	11796										
CHML	0	genome.wustl.edu	37	chr1	241797530	241797530	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tctcttgctgttttagaagaTgaacatgtcaaatgtaccag	8	7	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	241797530	241797530	T	C	SNP	CHML	ENST00000366553	human	ensembl	69_37n	-1	known	silent	c.1539	p.S513	0.019	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	151	0	0	113	79	41.15	-	-	-	C	241797530	T	C	241797530	2	2	195	1	0	0	0	0	0	0	0	1	3380	1451	51	5		5	CHML	1	241797530	Silent	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	4006366	241797530	7453091	31	11797										
OR2G3	0	genome.wustl.edu	37	chr1	247769389	247769389	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cttttaccttgcaattgcctCtctgtggcaaccataggctg	8	12	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	1	247769389	247769389	C	A	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.502	p.L168I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	350	0	0	482	189	28.17	-	-	-	A	247769389	C	A	247769389	3	1	195	1	0	0	0	0	1	0	0	0	11072	913	32	2	504	2	OR2G3	1	247769389	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5971859	247769389	1481232	32	11798										
ITSN2	0	genome.wustl.edu	37	chr2	24531579	24531579	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aactgcccactctgaggtccCagtcttgggtgagttccctg	11	13	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	24531579	24531579	C	A	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.700	p.G234W	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	47	0	0	83	45	35.16	-	-	-	A	24531579	C	A	24531579	3	1	195	1	0	0	0	0	1	0	0	0	7981	594	21	4	4576	4	ITSN2	2	24531579	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		24531579	218667794	33	11799										
C2orf71	0	genome.wustl.edu	37	chr2	29294161	29294162	+	Frame_Shift_Ins	INS	-	-	G													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gagaggcctttctgcccacaINSggggggcttctctctcggct							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	29294161	29294162	-	G	INS	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.2967_2966	p.V990fs	0.000:0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	25	0	0	17	3	15	-	-	-	G	29294162	-	G	29294161	7	5	195	1	0	1	1	0	0	0	0	0	2211	175	7	0	907	0	C2orf71	2	29294161	Frame_Shift_Ins	INS	-	TCGA-A8-A08L-01A-11W-A019-09	4762582	29294161	213905212	34	11800										
TMEM127	0	genome.wustl.edu	37	chr2	96919811	96919811	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctgggccaagatgagttcaGaagcccaataagaaaagcca	11	9	1	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	96919811	96919811	G	C	SNP	TMEM127	ENST00000258439	human	ensembl	69_37n	-1	known	missense	c.452	p.S151C	1.000	NULL	NULL	-	no_errors	TMEM127	HGNC	ENSG00000135956	104	0	0	52	29	35.8	-	-	-	C	96919811	G	C	96919811	3	2	195	1	0	0	0	0	1	0	0	0	16135	942	33	2	268	2	TMEM127	2	96919811	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	67625650	96919811	146279562	35	11801										
G6PC2	0	genome.wustl.edu	37	chr2	169761050	169761050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atgcaatgggcgcatcctgtGtctggtatgtcatggtaacc	12	9	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	169761050	169761050	G	T	SNP	G6PC2	ENST00000375363	human	ensembl	69_37n	1	known	missense	c.364	p.V122F	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC2	HGNC	ENSG00000152254	277	0	0	78	220	73.83	-	-	-	T	169761050	G	T	169761050	3	4	195	1	0	0	0	0	1	0	0	0	6193	1377	48	4	374	4	G6PC2	2	169761050	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	72841239	169761050	73438323	36	11802										
NEUROD1	0	genome.wustl.edu	37	chr2	182543042	182543042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tgcaggcagcccgcaaccagGttggtggtgggttgggataa	17	8	0	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	182543042	182543042	G	A	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	silent	c.546	p.N182	1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	140	0	0	52	65	55.56	-	-	-	A	182543042	G	A	182543042	2	1	195	1	0	0	0	0	0	0	0	1	10420	1252	44	4		4	NEUROD1	2	182543042	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	12781992	182543042	60656331	37	11803										
CALCRL	0	genome.wustl.edu	37	chr2	188216646	188216646	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gaataaaatcaattatcataCctctccattaaagaagcaga	4	8	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	188216646	188216646	C	A	SNP	CALCRL	ENST00000392370	human	ensembl	69_37n	-1	known	splice_site	c.1170+1	e11+1	1.000	-	-	-	no_errors	CALCRL	HGNC	ENSG00000064989	73	0	0	105	105	50	-	-	-	A	188216646	C	A	188216646	5	1	195	1	0	0	0	0	0	0	1	0	2605	521	18	4	222	4	CALCRL	2	188216646	Splice_Site	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5673604	188216646	54982727	38	11804										
MPP4	0	genome.wustl.edu	37	chr2	202557736	202557736	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agctcttgcagcacaagcctCaggatctgggagaggcctag	13	11	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	202557736	202557736	C	T	SNP	MPP4	ENST00000359962	human	ensembl	69_37n	-1	known	silent	c.96	p.L32	1.000	smart_L27,pfscan_L27	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP4	HGNC	ENSG00000082126	132	0	0	128	34	20.99	-	-	-	T	202557736	C	T	202557736	2	4	195	1	0	0	0	0	0	0	0	1	9808	813	29	2		2	MPP4	2	202557736	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	14341090	202557736	40641637	39	11805										
ALS2CR8	0	genome.wustl.edu	37	chr2	203848276	203848276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgtgagccaagttaaacaaGaacccaaagaaccagcattg	8	10	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	203848276	203848276	G	C	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	missense	c.2107	p.E703Q	1.000	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	127	0	0	271	95	25.89	-	-	-	C	203848276	G	C	203848276	3	2	195	1	0	0	0	0	1	0	0	0	555	943	33	2	2161	2	ALS2CR8	2	203848276	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	1290540	203848276	39351097	40	11806										
NBEAL1	0	genome.wustl.edu	37	chr2	204009564	204009564	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttttaccaatggtagctcctCattttttgaagattttcaag	6	7	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	204009564	204009564	C	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.5003	p.S1668L	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	143	0	0	270	95	26.03	-	-	-	T	204009564	C	T	204009564	3	4	195	1	0	0	0	0	1	0	0	0	10260	838	29	2	5121	2	NBEAL1	2	204009564	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	161288	204009564	39189809	41	11807										
PIKFYVE	0	genome.wustl.edu	37	chr2	209218801	209218801	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atccatagtgactcccatttCctttctagccacctcattat	3	14	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	209218801	209218801	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	silent	c.6024	p.F2008	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	206	0	0	195	57	22.62	-	-	-	T	209218801	C	T	209218801	2	4	195	1	0	0	0	0	0	0	0	1	11998	854	30	2		2	PIKFYVE	2	209218801	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5209237	209218801	33980572	42	11808										
ARPC2	0	genome.wustl.edu	37	chr2	219103560	219103560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gggcagttatccattataggGatgatgagaccatgtgagta	13	5	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	2	219103560	219103560	G	A	SNP	ARPC2	ENST00000295685	human	ensembl	69_37n	1	known	missense	c.442	p.D148N	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466	89	0	0	66	49	42.61	-	-	-	A	219103560	G	A	219103560	3	1	195	1	0	0	0	0	1	0	0	0	975	1174	41	2	460	2	ARPC2	2	219103560	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	9884759	219103560	24095813	43	11809										
LRRN1	0	genome.wustl.edu	37	chr3	3887067	3887067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgagagcctgtctttttatGataacaaactggttaaagtc	8	6	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	3887067	3887067	G	C	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	missense	c.742	p.D248H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	237	0	0	448	158	26.07	-	-	-	C	3887067	G	C	3887067	3	2	195	1	0	0	0	0	1	0	0	0	9100	1290	45	2	744	2	LRRN1	3	3887067	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		3887067	194135363	44	11810										
NME6	0	genome.wustl.edu	37	chr3	48336135	48336135	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	catagacctgcatcaggctgGtcctaggcctcctgttccag	10	14	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	48336135	48336135	G	C	SNP	NME6	ENST00000421967	human	ensembl	69_37n	-1	known	missense	c.577	p.P193A	0.997	NULL	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113	220	0	0	34	38	52.78	-	-	-	C	48336135	G	C	48336135	3	2	195	1	0	0	0	0	1	0	0	0	10567	1261	44	4	11	4	NME6	3	48336135	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	44449068	48336135	149686295	45	11811										
ADAMTS9	0	genome.wustl.edu	37	chr3	64666906	64666906	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cacatgcatgccttcctgttGagggctctctctggggggcg	14	12	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	64666906	64666906	G	C	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	nonsense	c.650	p.S217*	0.015	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	55	0	0	9	14	60.87	-	-	-	C	64666906	G	C	64666906	4	2	195	1	0	0	0	0	0	1	0	0	273	1294	45	2	5305	2	ADAMTS9	3	64666906	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	16330771	64666906	133355524	46	11812										
OR5H1	0	genome.wustl.edu	37	chr3	97851818	97851818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tagctaagagtaagatgataTctctctctgaatgcaagata	8	6	2	5			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	97851818	97851818	T	C	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.277	p.S93P	0.445	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	598	0	0	465	248	34.64	-	-	-	C	97851818	T	C	97851818	3	2	195	1	0	0	0	0	1	0	0	0	11232	1435	50	5	279	5	OR5H1	3	97851818	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	33184912	97851818	100170612	47	11813										
CCDC80	0	genome.wustl.edu	37	chr3	112357028	112357028	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttctctttctcttgcttgctCtttttctcagacttcttcat	3	12	6	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	112357028	112357028	C	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.1725	p.K575N	0.991	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	211	0	0	219	228	51.01	-	-	-	A	112357028	C	A	112357028	3	1	195	1	0	0	0	0	1	0	0	0	2881	912	32	2	1155	2	CCDC80	3	112357028	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	14505210	112357028	85665402	48	11814										
PARP14	0	genome.wustl.edu	37	chr3	122418982	122418982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aagtgtgaaatccaggaaaaGgtgtacaccatggctcagaa	11	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	122418982	122418982	G	A	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	silent	c.1581	p.K527	0.141	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	86	0	0	155	56	26.42	-	-	-	A	122418982	G	A	122418982	2	1	195	1	0	0	0	0	0	0	0	1	11531	991	35	4		4	PARP14	3	122418982	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	10061954	122418982	75603448	49	11815										
SEC61A1	0	genome.wustl.edu	37	chr3	127779472	127779472	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tgaaaccatcgtatggaaggCattcagccccactactgtca	8	12	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	127779472	127779472	C	G	SNP	SEC61A1	ENST00000243253	human	ensembl	69_37n	1	known	missense	c.584	p.A195G	1.000	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A1	HGNC	ENSG00000058262	51	0	0	15	11	42.31	-	-	-	G	127779472	C	G	127779472	3	3	195	1	0	0	0	0	1	0	0	0	14088	710	25	4	610	4	SEC61A1	3	127779472	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5360490	127779472	70242958	50	11816										
TRIM42	0	genome.wustl.edu	37	chr3	140401484	140401484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aagtgcctgcggcagctgcaGaagcacgccgaggtcaccga	14	13	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	140401484	140401484	G	C	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.522	p.Q174H	0.570	pfscan_Znf_RING	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	109	0	0	105	40	27.4	-	-	-	C	140401484	G	C	140401484	3	2	195	1	0	0	0	0	1	0	0	0	16613	933	33	2	528	2	TRIM42	3	140401484	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	12622012	140401484	57620946	51	11817										
XRN1	0	genome.wustl.edu	37	chr3	142139962	142139962	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctttcaaaccattttaggtCcacaaaaacttcactgaagt	5	10	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	142139962	142139962	C	A	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.1069	p.D357Y	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	82	0	0	175	62	26.16	-	-	-	A	142139962	C	A	142139962	3	1	195	1	0	0	0	0	1	0	0	0	17556	855	30	2	4183	2	XRN1	3	142139962	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1738478	142139962	55882468	52	11818										
SSR3	0	genome.wustl.edu	37	chr3	156260995	156260995	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggtgaagctgacatggtctaTttggagccagtagacaggag	15	6	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	156260995	156260995	T	C	SNP	SSR3	ENST00000265044	human	ensembl	69_37n	-1	known	silent	c.555	p.K185	1.000	NULL	pfam_TRAP-gamma	-	no_errors	SSR3	HGNC	ENSG00000114850	112	0	0	56	33	37.08	-	-	-	C	156260995	T	C	156260995	2	2	195	1	0	0	0	0	0	0	0	1	15283	1490	52	5		5	SSR3	3	156260995	Silent	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	14121033	156260995	41761435	53	11819										
RARRES1	0	genome.wustl.edu	37	chr3	158422690	158422690	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caaatcccagatgagtctcaGagagggatcaatatgtccat	9	9	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	158422690	158422690	G	C	SNP	RARRES1	ENST00000237696	human	ensembl	69_37n	-1	known	missense	c.562	p.L188V	0.994	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	-	no_errors	RARRES1	HGNC	ENSG00000118849	67	0	0	88	25	22.12	-	-	-	C	158422690	G	C	158422690	3	2	195	1	0	0	0	0	1	0	0	0	13138	933	33	2	349	2	RARRES1	3	158422690	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	2161695	158422690	39599740	54	11820										
TNFSF10	0	genome.wustl.edu	37	chr3	172241142	172241142	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agcacgcaggtctgtcccagGctgggtcccccctggacctc	12	17	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	172241142	172241142	G	A	SNP	TNFSF10	ENST00000241261	human	ensembl	69_37n	-1	known	silent	c.33	p.S11	0.000	pirsf_TNF_ligand_10/11	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_ligand_10/11,pfscan_TNF	-	no_errors	TNFSF10	HGNC	ENSG00000121858	146	0	0	178	71	28.29	-	-	-	A	172241142	G	A	172241142	2	1	195	1	0	0	0	0	0	0	0	1	16396	1194	42	4		4	TNFSF10	3	172241142	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	13818452	172241142	25781288	55	11821										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	168	0	0	154	193	55.62	-	-	-	G	178952085	A	G	178952085	3	3	195	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	6710943	178952085	19070345	56	11822										
MFN1	0	genome.wustl.edu	37	chr3	179066656	179066656	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cataatggcagaacctgtttCtccactgaagcactttgtgc	8	11	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	179066656	179066656	C	G	SNP	MFN1	ENST00000263969	human	ensembl	69_37n	1	known	missense	c.17	p.S6C	1.000	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	105	0	0	83	40	32.26	-	-	-	G	179066656	C	G	179066656	3	3	195	1	0	0	0	0	1	0	0	0	9594	913	32	2	19	2	MFN1	3	179066656	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	114571	179066656	18955774	57	11823										
ECE2	0	genome.wustl.edu	37	chr3	184003335	184003335	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agcctggaccgacgctttgaGtctgcacaagagaagctgct	12	11	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	184003335	184003335	G	T	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	missense	c.1572	p.E524D	0.998	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	145	0	0	83	21	20.19	-	-	-	T	184003335	G	T	184003335	3	4	195	1	0	0	0	0	1	0	0	0	4925	1020	36	4	2174	4	ECE2	3	184003335	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	4936679	184003335	14019095	58	11824										
TFRC	0	genome.wustl.edu	37	chr3	195802199	195802199	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tctacttgccgagccaggctGaaccgggtatatgacaatgg	12	10	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	3	195802199	195802199	G	A	SNP	TFRC	ENST00000360110	human	ensembl	69_37n	-1	known	silent	c.69	p.F23	0.995	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274	153	0	0	143	43	23.12	-	-	-	A	195802199	G	A	195802199	2	1	195	1	0	0	0	0	0	0	0	1	15907	1281	45	2		2	TFRC	3	195802199	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	11798864	195802199	2220231	59	11825										
ZNF141	0	genome.wustl.edu	37	chr4	367624	367624	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tttaaacggttctcacacctGaataaacataagaaaattca	4	8	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	367624	367624	G	C	SNP	ZNF141	ENST00000240499	human	ensembl	69_37n	1	known	silent	c.1398	p.L466	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF141	HGNC	ENSG00000131127	235	0	0	242	36	12.9	-	-	-	C	367624	G	C	367624	2	2	195	1	0	0	0	0	0	0	0	1	17826	1277	45	2		2	ZNF141	4	367624	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		367624	190786652	60	11826										
ANKRD17	0	genome.wustl.edu	37	chr4	74014637	74014637	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccaggctagctcctctttcaAtaagtaaagccgcaagttcc	7	13	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	74014637	74014637	A	G	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.1460	p.I487T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	59	0	0	70	30	30	-	-	-	G	74014637	A	G	74014637	3	3	195	1	0	0	0	0	1	0	0	0	646	101	4	5	6459	5	ANKRD17	4	74014637	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	73647013	74014637	117139639	61	11827										
SEC31A	0	genome.wustl.edu	37	chr4	83782814	83782814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agctgctcttcagcagcaggGctctcctccccatcactctg	8	17	5	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	83782814	83782814	G	T	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.1596	p.S532R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	52	0	0	22	12	35.29	-	-	-	T	83782814	G	T	83782814	3	4	195	1	0	0	0	0	1	0	0	0	14086	1194	42	4	2122	4	SEC31A	4	83782814	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	9768177	83782814	107371462	62	11828										
PDE5A	0	genome.wustl.edu	37	chr4	120528318	120528318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagagattttcctggttggtGttccaggggcactgttatct	12	8	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	120528318	120528318	G	T	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	missense	c.287	p.T96K	0.997	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	194	0	0	66	101	60.12	-	-	-	T	120528318	G	T	120528318	3	4	195	1	0	0	0	0	1	0	0	0	11717	1377	48	4	2420	4	PDE5A	4	120528318	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	36745504	120528318	70625958	63	11829										
KIAA1109	0	genome.wustl.edu	37	chr4	123234825	123234825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tgaagtatgttcaagaactaCaggacaagcagcagctggta	11	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	123234825	123234825	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.10295	p.T3432I	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	110	0	0	36	49	57.65	-	-	-	T	123234825	C	T	123234825	3	4	195	1	0	0	0	0	1	0	0	0	8260	478	17	4	10525	4	KIAA1109	4	123234825	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	2706507	123234825	67919451	64	11830										
SORBS2	0	genome.wustl.edu	37	chr4	186578664	186578664	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gatgactgtcactctcttctCttcctctgaggatcggtaca	8	12	4	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	4	186578664	186578664	C	G	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.181	p.E61Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	47	0	0	17	11	39.29	-	-	-	G	186578664	C	G	186578664	3	3	195	1	0	0	0	0	1	0	0	0	15017	922	32	2	3525	2	SORBS2	4	186578664	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	63343839	186578664	4575612	65	11831										
AHRR	0	genome.wustl.edu	37	chr5	413494	413494	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctctggtcgtgagtgcagaAgggacgatattttatgcatc	13	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	413494	413494	A	G	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	silent	c.399	p.E133	1.000	pfam_PAS_fold,smart_PAS,pfscan_PAS	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	58	0	0	18	7	28	-	-	-	G	413494	A	G	413494	2	3	195	1	0	0	0	0	0	0	0	1	417	69	3	5		5	AHRR	5	413494	Silent	SNP	A	TCGA-A8-A08L-01A-11W-A019-09		413494	180501766	66	11832										
C5orf28	0	genome.wustl.edu	37	chr5	43446514	43446514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	catctcggatatgatgtgaaGtccaggatataaataacatc	8	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	43446514	43446514	G	T	SNP	C5orf28	ENST00000397080	human	ensembl	69_37n	-1	known	missense	c.458	p.T153N	1.000	NULL	NULL	-	no_errors	C5orf28	HGNC	ENSG00000151881	283	0	0	417	86	17.1	-	-	-	T	43446514	G	T	43446514	3	4	195	1	0	0	0	0	1	0	0	0	2310	1029	36	4	193	4	C5orf28	5	43446514	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	43033020	43446514	137468746	67	11833										
GZMA	0	genome.wustl.edu	37	chr5	54403622	54403622	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aatgttgtgtctgttctcagGaacaaaaggtcccaggtcat	10	8	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	54403622	54403622	G	A	SNP	GZMA	ENST00000274306	human	ensembl	69_37n	1	known	silent	c.216	p.L72	0.294	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMA	HGNC	ENSG00000145649	186	0	0	190	101	34.59	-	-	-	A	54403622	G	A	54403622	2	1	195	1	0	0	0	0	0	0	0	1	6966	1188	41	2		2	GZMA	5	54403622	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	10957108	54403622	126511638	68	11834										
SLCO4C1	0	genome.wustl.edu	37	chr5	101582963	101582963	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	acgtgctacataccttaggaTagacacagttataggagtac	9	8	0	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	101582963	101582963	T	C	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	missense	c.1804	p.I602V	0.997	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	190	0	0	89	96	51.61	-	-	-	C	101582963	T	C	101582963	3	2	195	1	0	0	0	0	1	0	0	0	14819	1406	49	5	386	5	SLCO4C1	5	101582963	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	47179341	101582963	79332297	69	11835										
PCDHA4	0	genome.wustl.edu	37	chr5	140187617	140187617	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggacattgtttattcattctCaaatgatatttcgccaaatg	6	7	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	140187617	140187617	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.845	p.S282L	0.026	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	164	0	0	64	31	32.63	-	-	-	T	140187617	C	T	140187617	3	4	195	1	0	0	0	0	1	0	0	0	11599	838	29	2	847	2	PCDHA4	5	140187617	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	38604654	140187617	40727643	70	11836										
SPINK5	0	genome.wustl.edu	37	chr5	147481391	147481391	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aggaaaaacggacggcttttTtgcaccagagagaatgaccc	11	9	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	5	147481391	147481391	T	C	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	silent	c.1350	p.F450	0.007	smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	200	0	0	186	91	32.85	-	-	-	C	147481391	T	C	147481391	2	2	195	1	0	0	0	0	0	0	0	1	15153	1838	64	5		5	SPINK5	5	147481391	Silent	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	7293774	147481391	33433869	71	11837										
OR12D3	0	genome.wustl.edu	37	chr6	29342374	29342374	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagagccttgtggagtattcTgcaggacctgttcttaaaca	10	9	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	29342374	29342374	T	G	SNP	OR12D3	ENST00000377143	human	ensembl	69_37n	-1	known	silent	c.691	p.R231	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462	304	0	0	134	280	67.47	-	-	-	G	29342374	T	G	29342374	2	3	195	1	0	0	0	0	0	0	0	1	11005	1588	55	5		5	OR12D3	6	29342374	Silent	SNP	T	TCGA-A8-A08L-01A-11W-A019-09		29342374	141772693	72	11838										
ATP6V1G2	0	genome.wustl.edu	37	chr6	31513277	31513277	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gacacgctctcggtttctctGctgggagctctgcatgccct	11	14	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	31513277	31513277	G	A	SNP	ATP6V1G2	ENST00000303892	human	ensembl	69_37n	-1	known	nonsense	c.265	p.Q89*	1.000	pfam_V-ATPase_G,tigrfam_V-ATPase_G	pfam_V-ATPase_G,tigrfam_V-ATPase_G	-	no_errors	ATP6V1G2	HGNC	ENSG00000213760	82	0	0	17	55	76.39	-	-	-	A	31513277	G	A	31513277	4	1	195	1	0	0	0	0	0	1	0	0	1191	1328	46	4	95	4	ATP6V1G2	6	31513277	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	2170903	31513277	139601790	73	11839										
TNXB	0	genome.wustl.edu	37	chr6	32021406	32021406	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggggtggcatctgtcacggtCagctccccgaggcgaggctt	16	12	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	32021406	32021406	C	G	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.8544	p.L2848	0.821	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	59	0	0	4	14	77.78	-	-	-	G	32021406	C	G	32021406	2	3	195	1	0	0	0	0	0	0	0	1	16441	813	29	2		2	TNXB	6	32021406	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	508129	32021406	139093661	74	11840										
ITPR3	0	genome.wustl.edu	37	chr6	33663498	33663498	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cttaaccctagatgacggagCagcggaaacgcaggcaacgc	12	12	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	33663498	33663498	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	nonsense	c.7957	p.Q2653*	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	77	0	0	11	25	69.44	-	-	-	T	33663498	C	T	33663498	4	4	195	1	0	0	0	0	0	1	0	0	7976	711	25	4	8187	4	ITPR3	6	33663498	Nonsense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1642092	33663498	137451569	75	11841										
PI16	0	genome.wustl.edu	37	chr6	36930982	36930982	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccttgcgtaacaactgaggtCccttccattttggcagctca	8	13	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	36930982	36930982	C	A	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	silent	c.864	p.V288	0.244	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	246	0	0	46	25	35.21	-	-	-	A	36930982	C	A	36930982	2	1	195	1	0	0	0	0	0	0	0	1	11943	842	30	2		2	PI16	6	36930982	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3267484	36930982	134184085	76	11842										
TREM2	0	genome.wustl.edu	37	chr6	41126463	41126463	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gcaggctgggctggtccctgGtgggacttctcctgggcttt	16	11	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	41126463	41126463	G	T	SNP	TREM2	ENST00000338469	human	ensembl	69_37n	-1	known	missense	c.538	p.P180T	0.000	NULL	pfam_Ig_V-set	-	no_errors	TREM2	HGNC	ENSG00000095970	114	0	0	38	67	63.21	-	-	-	T	41126463	G	T	41126463	3	4	195	1	0	0	0	0	1	0	0	0	16567	1276	44	4		4	TREM2	6	41126463	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	4195481	41126463	129988604	77	11843										
SLC35B2	0	genome.wustl.edu	37	chr6	44222510	44222510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gttgctttagacggccccgcGcgtagactctgagcaggagg	15	11	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	44222510	44222510	G	A	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.1232	p.A411V	1.000	pfam_UAA	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	264	1	0.38	9	38	80.85	-	-	-	A	44222510	G	A	44222510	3	1	195	1	0	0	0	0	1	0	0	0	14665	1087	38	1	70	1	SLC35B2	6	44222510	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	3096047	44222510	126892557	78	11844										
SNX3	0	genome.wustl.edu	37	chr6	108544177	108544177	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctctctctttctaattcacTtcgcagccattcaaagtcac	4	14	6	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	108544177	108544177	T	G	SNP	SNX3	ENST00000230085	human	ensembl	69_37n	-1	known	missense	c.235	p.S79R	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX3	HGNC	ENSG00000112335	66	0	0	91	62	40.52	-	-	-	G	108544177	T	G	108544177	3	3	195	1	0	0	0	0	1	0	0	0	14988	1609	56	5	265	5	SNX3	6	108544177	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	64321667	108544177	62570890	79	11845										
GPRC6A	0	genome.wustl.edu	37	chr6	117130607	117130607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	taaactccacagtttctctgGagcagttgaatttagaaaga	8	7	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	117130607	117130607	G	C	SNP	GPRC6A	ENST00000310357	human	ensembl	69_37n	-1	known	missense	c.368	p.S123C	0.736	pfam_ANF_lig-bd_rcpt	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	132	0	0	61	154	71.63	-	-	-	C	117130607	G	C	117130607	3	2	195	1	0	0	0	0	1	0	0	0	6779	1174	41	2	2432	2	GPRC6A	6	117130607	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	8586430	117130607	53984460	80	11846										
FAM184A	0	genome.wustl.edu	37	chr6	119297156	119297156	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttcttgatgatgattatgccGtaacaaatcaattgcagctg	8	7	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	119297156	119297156	G	T	SNP	FAM184A	ENST00000475529	human	ensembl	69_37n	-1	known	nonsense	c.273	p.Y91*	0.995	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM184A	HGNC	ENSG00000111879	48	0	0	42	77	64.71	-	-	-	T	119297156	G	T	119297156	4	4	195	1	0	0	0	0	0	1	0	0	5552	1144	40	3	941	3	FAM184A	6	119297156	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	2166549	119297156	51817911	81	11847										
TAAR6	0	genome.wustl.edu	37	chr6	132891576	132891576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggtgattctgtacatagtgtTtggctttggggctgtgctgg	16	5	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	132891576	132891576	T	G	SNP	TAAR6	ENST00000275198	human	ensembl	69_37n	1	known	missense	c.116	p.F39C	0.121	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR6	HGNC	ENSG00000146383	139	0	0	191	63	24.61	-	-	-	G	132891576	T	G	132891576	3	3	195	1	0	0	0	0	1	0	0	0	15584	1841	64	5	118	5	TAAR6	6	132891576	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	13594420	132891576	38223491	82	11848										
CITED2	0	genome.wustl.edu	37	chr6	139694322	139694322	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cacgaagtccgtcataaaatCaaactcgttttgccccagcc	6	14	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	139694322	139694322	C	T	SNP	CITED2	ENST00000367651	human	ensembl	69_37n	-1	known	missense	c.760	p.D254N	1.000	pfam_CITED	pfam_CITED	-	no_errors	CITED2	HGNC	ENSG00000164442	126	0	0	55	7	11.29	-	-	-	T	139694322	C	T	139694322	3	4	195	1	0	0	0	0	1	0	0	0	3470	826	29	2	56	2	CITED2	6	139694322	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	6802746	139694322	31420745	83	11849										
TIAM2	0	genome.wustl.edu	37	chr6	155450749	155450749	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agataaccacatcacctccaGagactgcaacggacaccttc	6	15	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	6	155450749	155450749	G	C	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.392	p.R131T	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	92	0	0	40	51	56.04	-	-	-	C	155450749	G	C	155450749	3	2	195	1	0	0	0	0	1	0	0	0	15986	942	33	2	394	2	TIAM2	6	155450749	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	15756427	155450749	15664318	84	11850										
NEUROD6	0	genome.wustl.edu	37	chr7	31378755	31378755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttttgatgctctttcctcgaAggacaatctgtttggaaaag	9	7	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	31378755	31378755	A	G	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.128	p.L43P	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	294	0	0	149	25	14.29	-	-	-	G	31378755	A	G	31378755	3	3	195	1	0	0	0	0	1	0	0	0	10423	72	3	5	889	5	NEUROD6	7	31378755	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09		31378755	127759908	85	11851										
ANLN	0	genome.wustl.edu	37	chr7	36465627	36465627	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tttttttttttttttagaaaAgcaacattcattcttcaggt	4	5	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	36465627	36465627	A	T	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	missense	c.2752	p.S918C	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	75	0	0	87	18	17.14	-	-	-	T	36465627	A	T	36465627	3	4	195	1	0	0	0	0	1	0	0	0	693	72	3	5	2826	5	ANLN	7	36465627	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	5086872	36465627	122673036	86	11852										
STARD3NL	0	genome.wustl.edu	37	chr7	38247149	38247149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggagaacgctctcaccgggaGccagagctcccatgcttctc	11	15	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	38247149	38247149	G	C	SNP	STARD3NL	ENST00000009041	human	ensembl	69_37n	1	known	missense	c.44	p.S15T	1.000	NULL	pfam_MENTAL	-	no_errors	STARD3NL	HGNC	ENSG00000010270	148	0	0	120	34	22.08	-	-	-	C	38247149	G	C	38247149	3	2	195	1	0	0	0	0	1	0	0	0	15349	971	34	4	46	4	STARD3NL	7	38247149	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	1781522	38247149	120891514	87	11853										
IGFBP3	0	genome.wustl.edu	37	chr7	45956971	45956971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgggatcagacacccggtgCgtgctggagacggacgggct	17	10	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	45956971	45956971	C	T	SNP	IGFBP3	ENST00000417621	human	ensembl	69_37n	-1	known	missense	c.55	p.A19T	0.004	NULL	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP-3,prints_IGFBP_1-6_chordata	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IGFBP3	HGNC	ENSG00000146674	94	0	0	13	13	50	-	-	-	T	45956971	C	T	45956971	3	4	195	1	0	0	0	0	1	0	0	0	7634	755	27	1	416	1	IGFBP3	7	45956971	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	7709822	45956971	113181692	88	11854										
MUC17	0	genome.wustl.edu	37	chr7	100692662	100692662	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gggtgaacatcacaaagctaCggtaagtgtctgggcccttg	13	9	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	100692662	100692662	C	T	SNP	MUC17	ENST00000379439	human	ensembl	69_37n	1	known	nonsense	c.12721	p.R4241*	0.000	pfam_SEA,pfscan_SEA	pfam_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	121	0	0	89	51	36.43	-	-	-	T	100692662	C	T	100692662	4	4	195	1	0	0	0	0	0	1	0	0	10046	550	19	1	12743	1	MUC17	7	100692662	Nonsense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	54735691	100692662	58446001	89	11855										
RELN	0	genome.wustl.edu	37	chr7	103236919	103236919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttacctgggtttgctgaagtCtgaaaagtacatctctgcta	9	8	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	103236919	103236919	C	G	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.3523	p.D1175H	1.000	superfamily_Growth_fac_rcpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	172	0	0	119	56	32	-	-	-	G	103236919	C	G	103236919	3	3	195	1	0	0	0	0	1	0	0	0	13303	913	32	2	7023	2	RELN	7	103236919	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	2544257	103236919	55901744	90	11856										
KCND2	0	genome.wustl.edu	37	chr7	119915782	119915782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagccttctggtataccatcGtcaccatgacaacactaggg	8	13	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	119915782	119915782	G	A	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.1096	p.V366I	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	89	0	0	24	9	27.27	-	-	-	A	119915782	G	A	119915782	3	1	195	1	0	0	0	0	1	0	0	0	8073	1145	40	1	1098	1	KCND2	7	119915782	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	16678863	119915782	39222881	91	11857										
KIAA1549	0	genome.wustl.edu	37	chr7	138583717	138583717	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttacgctgggcaatgacaccTtgaattcggtaacccaagat	9	10	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	138583717	138583717	T	A	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.3831	p.Q1277H	0.919	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	398	0	0	334	205	38.03	-	-	-	A	138583717	T	A	138583717	3	1	195	1	0	0	0	0	1	0	0	0	8296	1606	56	5	2069	5	KIAA1549	7	138583717	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	18667935	138583717	20554946	92	11858										
TAS2R40	0	genome.wustl.edu	37	chr7	142919307	142919307	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tcacggccatctatggggctGagtgggccaggggcaaaaca	15	10	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	142919307	142919307	G	C	SNP	TAS2R40	ENST00000408947	human	ensembl	69_37n	1	known	missense	c.136	p.E46Q	0.082	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R40	HGNC	ENSG00000221937	281	0	0	200	110	35.48	-	-	-	C	142919307	G	C	142919307	3	2	195	1	0	0	0	0	1	0	0	0	15670	1291	45	2	138	2	TAS2R40	7	142919307	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	4335590	142919307	16219356	93	11859										
ZYX	0	genome.wustl.edu	37	chr7	143080094	143080094	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccccagcccaagcctcaggtCcaactccatgtccagtccca	6	20	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	143080094	143080094	C	G	SNP	ZYX	ENST00000436448	human	ensembl	69_37n	1	known	missense	c.152	p.S51C	0.041	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZYX	HGNC	ENSG00000159840	107	0	0	32	10	23.81	-	-	-	G	143080094	C	G	143080094	3	3	195	1	0	0	0	0	1	0	0	0	18345	842	30	2	716	2	ZYX	7	143080094	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	160787	143080094	16058569	94	11860										
OR2A12	0	genome.wustl.edu	37	chr7	143793109	143793109	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaaggggctctaaagagagtCctttggaaacagagatcaat	11	6	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	7	143793109	143793109	C	T	SNP	OR2A12	ENST00000408949	human	ensembl	69_37n	1	known	silent	c.909	p.V303	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858	426	0	0	324	197	37.81	-	-	-	T	143793109	C	T	143793109	2	4	195	1	0	0	0	0	0	0	0	1	11048	842	30	2		2	OR2A12	7	143793109	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	713015	143793109	15345554	95	11861										
CSMD1	0	genome.wustl.edu	37	chr8	3889446	3889446	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cctctgcaaaagggagctggGaagtcccacgatgcaccatt	11	12	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	3889446	3889446	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	silent	c.591	p.F197	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	49	0	0	33	18	34.62	-	-	-	A	3889446	G	A	3889446	2	1	195	1	0	0	0	0	0	0	0	1	3976	1165	41	2		2	CSMD1	8	3889446	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		3889446	142474576	96	11862										
EXTL3	0	genome.wustl.edu	37	chr8	28575722	28575722	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgacattggcgtccccatcAtggtaatagagaaacgaaca	9	10	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	28575722	28575722	A	G	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	missense	c.2146	p.M716V	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	144	0	0	75	40	34.78	-	-	-	G	28575722	A	G	28575722	3	3	195	1	0	0	0	0	1	0	0	0	5364	217	8	5	2148	5	EXTL3	8	28575722	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	24686276	28575722	117788300	97	11863										
CSPP1	0	genome.wustl.edu	37	chr8	68074106	68074106	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	acaaaattgcaagcaaactcCaaagacctccttcagttgac	5	12	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	68074106	68074106	C	G	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.2584	p.Q862E	0.962	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	128	0	0	108	37	25.17	-	-	-	G	68074106	C	G	68074106	3	3	195	1	0	0	0	0	1	0	0	0	3994	595	21	4	2775	4	CSPP1	8	68074106	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	39498384	68074106	78289916	98	11864										
PREX2	0	genome.wustl.edu	37	chr8	69129855	69129855	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgccttggcccacaggtgcAccctgagcgtgacgctggag	14	13	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	69129855	69129855	A	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.4609	p.T1537S	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	43	0	0	26	11	28.21	-	-	-	T	69129855	A	T	69129855	3	4	195	1	0	0	0	0	1	0	0	0	12558	159	6	5	4988	5	PREX2	8	69129855	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	1055749	69129855	77234167	99	11865										
PKHD1L1	0	genome.wustl.edu	37	chr8	110534984	110534984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cattcacaggtgactgcccaGccagttgaaaggtctgcatt	10	11	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	110534984	110534984	G	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.12195	p.Q4065H	0.947	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	82	0	0	75	68	47.22	-	-	-	T	110534984	G	T	110534984	3	4	195	1	0	0	0	0	1	0	0	0	12046	962	34	4	12493	4	PKHD1L1	8	110534984	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	41405129	110534984	35829038	100	11866										
SYBU	0	genome.wustl.edu	37	chr8	110587199	110587199	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caaccacgcaacagcccctgAgcaaggccccgatgttatac	8	16	0	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	8	110587199	110587199	A	C	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.1928	p.L643R	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	121	0	0	115	35	23.33	-	-	-	C	110587199	A	C	110587199	3	2	195	1	0	0	0	0	1	0	0	0	15518	304	11	5	67	5	SYBU	8	110587199	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	52215	110587199	35776823	101	11867										
SLC1A1	0	genome.wustl.edu	37	chr9	4583113	4583113	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtgaccatggtgattgtgctGagtgccgtgggcctgcccgc	16	11	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	4583113	4583113	G	A	SNP	SLC1A1	ENST00000262352	human	ensembl	69_37n	1	known	silent	c.1269	p.L423	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A1	HGNC	ENSG00000106688	201	0	0	43	63	59.43	-	-	-	A	4583113	G	A	4583113	2	1	195	1	0	0	0	0	0	0	0	1	14520	1277	45	2		2	SLC1A1	9	4583113	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		4583113	136630318	102	11868										
JAK2	0	genome.wustl.edu	37	chr9	5044448	5044448	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agtggcagcaacagagcctaTcggcatggaatatctcgagg	13	9	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	5044448	5044448	T	G	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	nonsense	c.396	p.Y132*	0.997	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,prints_Tyr_kinase_non-rcpt_Jak2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	90	0	0	10	24	68.57	-	-	-	G	5044448	T	G	5044448	4	3	195	1	0	0	0	0	0	1	0	0	7992	1442	50	5	406	5	JAK2	9	5044448	Nonsense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	461335	5044448	136168983	103	11869										
TLN1	0	genome.wustl.edu	37	chr9	35714848	35714848	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagcgatggtctgtgtggctGaggctgcagcctgcttggct	16	10	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	35714848	35714848	G	C	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	nonsense	c.2780	p.S927*	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	124	0	0	43	33	43.42	-	-	-	C	35714848	G	C	35714848	4	2	195	1	0	0	0	0	0	1	0	0	16042	1294	45	2	4989	2	TLN1	9	35714848	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	30670400	35714848	105498583	104	11870										
APBA1	0	genome.wustl.edu	37	chr9	72055953	72055953	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	accgagctggtagcgaaggtCtggtcttctgattaacacgg	13	9	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	72055953	72055953	C	G	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	missense	c.2260	p.D754H	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	254	0	0	138	64	31.37	-	-	-	G	72055953	C	G	72055953	3	3	195	1	0	0	0	0	1	0	0	0	757	913	32	2	265	2	APBA1	9	72055953	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	36341105	72055953	69157478	105	11871										
SMC5	0	genome.wustl.edu	37	chr9	72893519	72893519	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgtgaactcaaaaacttaaGggagaaagaaaaacagctcg	9	7	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	72893519	72893519	G	C	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	missense	c.656	p.R219T	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	143	0	0	155	80	34.04	-	-	-	C	72893519	G	C	72893519	3	2	195	1	0	0	0	0	1	0	0	0	14875	1000	35	4	674	4	SMC5	9	72893519	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	837566	72893519	68319912	106	11872										
RORB	0	genome.wustl.edu	37	chr9	77275546	77275546	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctcacagaccgaattgcacaGaacatcattaagtcccattt	5	12	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	77275546	77275546	G	C	SNP	RORB	ENST00000396204	human	ensembl	69_37n	1	known	missense	c.684	p.Q228H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ROR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963	235	0	0	202	101	33.33	-	-	-	C	77275546	G	C	77275546	3	2	195	1	0	0	0	0	1	0	0	0	13615	933	33	2	669	2	RORB	9	77275546	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	4382027	77275546	63937885	107	11873										
BICD2	0	genome.wustl.edu	37	chr9	95480926	95480926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tccataagcgcttccttgtcCttgtccacggcggggcccag	11	15	0	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	95480926	95480926	C	A	SNP	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	missense	c.2001	p.K667N	0.991	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	63	0	0	11	4	26.67	-	-	-	A	95480926	C	A	95480926	3	1	195	1	0	0	0	0	1	0	0	0	1434	680	24	4	588	4	BICD2	9	95480926	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	18205380	95480926	45732505	108	11874										
GABBR2	0	genome.wustl.edu	37	chr9	101148012	101148012	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	taggagagcatccctccaagGatgataaggttgttcatgta	11	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	101148012	101148012	G	T	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	silent	c.1572	p.I524	1.000	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	86	0	0	63	45	41.28	-	-	-	T	101148012	G	T	101148012	2	4	195	1	0	0	0	0	0	0	0	1	6205	1164	41	2		2	GABBR2	9	101148012	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	5667086	101148012	40065419	109	11875										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112899779	112899779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggaagggccctacagcgagcCttctaaacgtgggcccttat	12	12	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	112899779	112899779	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.1955	p.P652L	0.921	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	158	0	0	96	52	34.9	-	-	-	T	112899779	C	T	112899779	3	4	195	1	0	0	0	0	1	0	0	0	11483	681	24	4	1985	4	PALM2-AKAP2	9	112899779	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	11751767	112899779	28313652	110	11876										
DEC1	0	genome.wustl.edu	37	chr9	118164403	118164403	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tttttgtctcccagcagattGaatgtaagtgacttggaaaa	9	6	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	118164403	118164403	G	C	SNP	DEC1	ENST00000374016	human	ensembl	69_37n	1	known	nonstop	c.212	p.*71S	0.991	NULL	NULL	-	no_errors	DEC1	HGNC	ENSG00000173077	170	0	0	152	81	34.76	-	-	-	C	118164403	G	C	118164403	4	2	195	1	0	0	0	0	0	0	0	0	4412	1285	45	2	226	2	DEC1	9	118164403	Nonstop_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	5264624	118164403	23049028	111	11877										
C5	0	genome.wustl.edu	37	chr9	123777517	123777517	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tgcagcgttcttcttggcctGagaatttctttacaaggttc	9	9	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	123777517	123777517	G	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	silent	c.2019	p.L673	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	31	0	0	70	42	37.5	-	-	-	A	123777517	G	A	123777517	2	1	195	1	0	0	0	0	0	0	0	1	2301	1277	45	2		2	C5	9	123777517	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	5613114	123777517	17435914	112	11878										
NUP214	0	genome.wustl.edu	37	chr9	134108840	134108840	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgtcctgtgcttccttgcaGgtctgtccagggttttggtg	13	10	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	9	134108840	134108840	G	A	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	splice_site	c.6243-1	e36-1	1.000	-	-	-	no_errors	NUP214	HGNC	ENSG00000126883	33	0	0	22	19	46.34	-	-	-	A	134108840	G	A	134108840	5	1	195	1	0	0	0	0	0	0	1	0	10835	1014	35	4	6381	4	NUP214	9	134108840	Splice_Site	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	10331323	134108840	7104591	113	11879										
FAM21C	0	genome.wustl.edu	37	chr10	46265023	46265023	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tgaaaaagaccagtctctttGaggaagacaaagaagatgat	10	5	1	7			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	10	46265023	46265023	G	A	SNP	FAM21C	ENST00000374362	human	ensembl	69_37n	1	known	missense	c.1996	p.E666K	1.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661	347	0	0	119	180	60.2	-	-	-	A	46265023	G	A	46265023	3	1	195	1	0	0	0	0	1	0	0	0	5584	1291	45	2	2074	2	FAM21C	10	46265023	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		46265023	89269724	114	11880										
SLC16A12	0	genome.wustl.edu	37	chr10	91203597	91203598	+	Frame_Shift_Ins	INS	-	-	A													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aagtatgtctggaactccacINSaaaaaaaattgagatacatc							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	10	91203597	91203598	-	A	INS	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	frame_shift_ins	c.220_219	p.V73fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	88	0	0	92	14	13.21	-	-	-	A	91203598	-	A	91203597	7	5	195	1	0	1	1	0	0	0	0	0	14494	478	17	0	1350	0	SLC16A12	10	91203597	Frame_Shift_Ins	INS	-	TCGA-A8-A08L-01A-11W-A019-09	44938574	91203597	44331150	115	11881										
CYP2C18	0	genome.wustl.edu	37	chr10	96443636	96443636	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgtttctcctttcactctgGaggcagagctctggaagagg	12	9	4	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	10	96443636	96443636	G	A	SNP	CYP2C18	ENST00000285979	human	ensembl	69_37n	1	known	nonsense	c.60	p.W20*	0.927	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242	146	0	0	144	26	15.29	-	-	-	A	96443636	G	A	96443636	4	1	195	1	0	0	0	0	0	1	0	0	4196	1183	41	2	62	2	CYP2C18	10	96443636	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	5240039	96443636	39091111	116	11882										
C10orf120	0	genome.wustl.edu	37	chr10	124457369	124457369	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gatataaaatcctgattcatTagcattaagtcaccagggaa	7	7	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	10	124457369	124457369	T	C	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	silent	c.888	p.L296	0.123	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	191	0	0	112	72	39.13	-	-	-	C	124457369	T	C	124457369	2	2	195	1	0	0	0	0	0	0	0	1	1600	1741	61	5		5	C10orf120	10	124457369	Silent	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	28013733	124457369	11077378	117	11883										
SPTY2D1	0	genome.wustl.edu	37	chr11	18636180	18636180	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccattgctggaccggctaatGatattcttggaagaaattgt	10	7	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	18636180	18636180	G	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	silent	c.1641	p.I547	0.430	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	100	0	0	43	48	52.75	-	-	-	T	18636180	G	T	18636180	2	4	195	1	0	0	0	0	0	0	0	1	15217	1280	45	2		2	SPTY2D1	11	18636180	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		18636180	116370336	118	11884										
SLC5A12	0	genome.wustl.edu	37	chr11	26743111	26743111	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagagacaagccgacagggcCaaagctcatttgccttcccc	9	15	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	26743111	26743111	C	A	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.151	p.G51C	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	189	0	0	97	106	52.22	-	-	-	A	26743111	C	A	26743111	3	1	195	1	0	0	0	0	1	0	0	0	14753	594	21	4	1765	4	SLC5A12	11	26743111	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	8106931	26743111	108263405	119	11885										
ARHGAP1	0	genome.wustl.edu	37	chr11	46717591	46717591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atcgatggaggccagcttcaGctggttcagagcctcgctgg	14	11	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	46717591	46717591	G	A	SNP	ARHGAP1	ENST00000528837	human	ensembl	69_37n	-1	novel	missense	c.59	p.A20V	1.000	NULL	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP1	HGNC	ENSG00000175220	29	0	0	11	7	38.89	-	-	-	A	46717591	G	A	46717591	3	1	195	1	0	0	0	0	1	0	0	0	863	962	34	4	1300	4	ARHGAP1	11	46717591	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	19974480	46717591	88288925	120	11886										
ZNF408	0	genome.wustl.edu	37	chr11	46722615	46722615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggaatggaggaggcggaggaGctgctcttggaggggaagaa	21	4	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	46722615	46722615	G	A	SNP	ZNF408	ENST00000311764	human	ensembl	69_37n	1	known	silent	c.18	p.E6	0.146	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213	28	0	0	12	5	29.41	-	-	-	A	46722615	G	A	46722615	2	1	195	1	0	0	0	0	0	0	0	1	17984	962	34	4		4	ZNF408	11	46722615	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	5024	46722615	88283901	121	11887										
OR4X2	0	genome.wustl.edu	37	chr11	48267160	48267160	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gccccaatgtgatcaatcacTatttctgtgacctagttccc	6	13	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	48267160	48267160	T	A	SNP	OR4X2	ENST00000302329	human	ensembl	69_37n	1	known	missense	c.505	p.Y169N	0.964	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X2	HGNC	ENSG00000172208	610	0	0	459	251	35.3	-	-	-	A	48267160	T	A	48267160	3	1	195	1	0	0	0	0	1	0	0	0	11158	1522	53	5	507	5	OR4X2	11	48267160	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	1544545	48267160	86739356	122	11888										
OR5W2	0	genome.wustl.edu	37	chr11	55681165	55681165	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttcagttttttcagggcctcTttcacatccttgttcctcag	6	12	5	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	55681165	55681165	T	A	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	missense	c.894	p.K298N	0.922	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	91	0	0	126	77	37.93	-	-	-	A	55681165	T	A	55681165	3	1	195	1	0	0	0	0	1	0	0	0	11258	1606	56	5	40	5	OR5W2	11	55681165	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	7414005	55681165	79325351	123	11889										
SHANK2	0	genome.wustl.edu	37	chr11	70331834	70331834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtccacattctctccaccttCggaagacagggtggagatgc	11	12	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	11	70331834	70331834	C	T	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.4567	p.E1523K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	30	0	0	7	5	41.67	-	-	-	T	70331834	C	T	70331834	3	4	195	1	0	0	0	0	1	0	0	0	14354	893	31	1	993	1	SHANK2	11	70331834	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	14650669	70331834	64674682	124	11890										
C12orf4	0	genome.wustl.edu	37	chr12	4627964	4627967	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtgaatggtaaaactttcttCtaactttctctgttcctcat							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	CTAA	CTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	4627964	4627967	CTAA	-	DEL	C12orf4	ENST00000261250	human	ensembl	69_37n	-1	known	frame_shift_del	c.811_808	p.L270fs	1.000:1.000:1.000:1.000	pfam_DUF2362	pfam_DUF2362	-	no_errors	C12orf4	HGNC	ENSG00000047621	83	0	0	79	51	38.93	-	-	-	-	4627967	CTAA	-	4627964	7	5	195	1	0	1	0	1	0	0	0	0	1697	922	32	0	879	0	C12orf4	12	4627964	Frame_Shift_Del	DEL	CTAA	TCGA-A8-A08L-01A-11W-A019-09		4627964	129223931	125	11891										
PRB2	0	genome.wustl.edu	37	chr12	11546090	11546090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctggttgcctccttgtggggGtggtccttgtggctttcctg	15	10	0	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	11546090	11546090	G	T	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.922	p.P308T	0.006	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	471	0	0	311	164	34.53	-	-	-	T	11546090	G	T	11546090	3	4	195	1	0	0	0	0	1	0	0	0	12524	1261	44	4	332	4	PRB2	12	11546090	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	6918126	11546090	122305805	126	11892										
GYS2	0	genome.wustl.edu	37	chr12	21733378	21733378	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atattatgctcaaaatatggAcctatcagaaaatagttctc	5	7	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	21733378	21733378	A	G	SNP	GYS2	ENST00000261195	human	ensembl	69_37n	-1	known	silent	c.201	p.G67	0.741	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713	216	0	0	152	82	35.04	-	-	-	G	21733378	A	G	21733378	2	3	195	1	0	0	0	0	0	0	0	1	6964	262	10	5		5	GYS2	12	21733378	Silent	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	10187288	21733378	112118517	127	11893										
KRT5	0	genome.wustl.edu	37	chr12	52914042	52914043	+	Frame_Shift_Ins	INS	-	-	C													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cggtgctgaagctacgactgINScccccgctccggaaggacac							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	52914042	52914043	-	C	INS	KRT5	ENST00000252242	human	ensembl	69_37n	-1	known	frame_shift_ins	c.39_38	p.S14fs	0.019:0.124	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	52	0	0	32	10	23.81	-	-	-	C	52914043	-	C	52914042	7	5	195	1	0	1	1	0	0	0	0	0	8532	1306	46	0	1769	0	KRT5	12	52914042	Frame_Shift_Ins	INS	-	TCGA-A8-A08L-01A-11W-A019-09	31180664	52914042	80937853	128	11894										
RARG	0	genome.wustl.edu	37	chr12	53607384	53607384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agacaaggtctgtgaggggcCcgaagccggcattgtgcatc	15	10	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	53607384	53607384	C	T	SNP	RARG	ENST00000394426	human	ensembl	69_37n	-1	known	missense	c.914	p.G305E	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC	ENSG00000172819	112	0	0	25	21	45.65	-	-	-	T	53607384	C	T	53607384	3	4	195	1	0	0	0	0	1	0	0	0	13137	623	22	4	462	4	RARG	12	53607384	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	693342	53607384	80244511	129	11895										
LRP1	0	genome.wustl.edu	37	chr12	57573717	57573717	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gcctggagcagccccatggcCttgtcgtccaccctctgcgt	11	17	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	57573717	57573717	C	G	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.5119	p.L1707V	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	162	0	0	31	19	38	-	-	-	G	57573717	C	G	57573717	3	3	195	1	0	0	0	0	1	0	0	0	9017	681	24	4	5237	4	LRP1	12	57573717	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3966333	57573717	76278178	130	11896										
AVIL	0	genome.wustl.edu	37	chr12	58204166	58204166	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agttgatttctgcttctgatCtatgatctcatcagggactg	9	8	5	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	58204166	58204166	C	G	SNP	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	missense	c.727	p.D243H	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	113	0	0	81	39	32.5	-	-	-	G	58204166	C	G	58204166	3	3	195	1	0	0	0	0	1	0	0	0	1231	913	32	2	1788	2	AVIL	12	58204166	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	630449	58204166	75647729	131	11897										
C12orf50	0	genome.wustl.edu	37	chr12	88383052	88383052	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	attcattacctttagtatttGaacattttgatatggtgatt	6	4	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	88383052	88383052	G	C	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	nonsense	c.689	p.S230*	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	82	0	0	51	42	45.16	-	-	-	C	88383052	G	C	88383052	4	2	195	1	0	0	0	0	0	1	0	0	1707	1294	45	2	579	2	C12orf50	12	88383052	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	30178886	88383052	45468843	132	11898										
TCP11L2	0	genome.wustl.edu	37	chr12	106704987	106704987	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gagctttgcaagtgactcctCcagcaaatccagctctcctg	8	14	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	106704987	106704987	C	G	SNP	TCP11L2	ENST00000299045	human	ensembl	69_37n	1	known	missense	c.134	p.S45C	1.000	NULL	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	77	0	0	18	7	28	-	-	-	G	106704987	C	G	106704987	3	3	195	1	0	0	0	0	1	0	0	0	15810	855	30	2	136	2	TCP11L2	12	106704987	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	18321935	106704987	27146908	133	11899										
ATXN2	0	genome.wustl.edu	37	chr12	111908004	111908004	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtgttggtggtgccatcattCtagcattaccctgtattaca	9	9	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	12	111908004	111908004	C	T	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.3224	p.R1075K	0.981	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	148	0	0	54	77	58.78	-	-	-	T	111908004	C	T	111908004	3	4	195	1	0	0	0	0	1	0	0	0	1215	913	32	2	741	2	ATXN2	12	111908004	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5203017	111908004	21943891	134	11900										
ATP12A	0	genome.wustl.edu	37	chr13	25274963	25274963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agacgctatgaactttccgaCctccaacctctgttttgtgg	8	12	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	13	25274963	25274963	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	missense	c.1802	p.T601I	0.922	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	114	0	0	39	31	44.29	-	-	-	T	25274963	C	T	25274963	3	4	195	1	0	0	0	0	1	0	0	0	1126	507	18	4	1852	4	ATP12A	13	25274963	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		25274963	89894915	135	11901										
BRCA2	0	genome.wustl.edu	37	chr13	32932067	32932067	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggaaaagaagaattttatagGtactctatgcaaaaagattg	9	3	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	13	32932067	32932067	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	splice_site	c.7805+1	e15+1	1.000	-	-	-	no_errors	BRCA2	HGNC	ENSG00000139618	146	0	0	70	86	54.78	-	-	-	A	32932067	G	A	32932067	5	1	195	1	0	0	0	0	0	0	1	0	1507	1275	44	4	7864	4	BRCA2	13	32932067	Splice_Site	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	7657104	32932067	82237811	136	11902										
ELF1	0	genome.wustl.edu	37	chr13	41533123	41533124	+	Frame_Shift_Ins	INS	-	-	A													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caggaacatgttccacaattINSacggcaggaaaaatagctgg							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	13	41533123	41533124	-	A	INS	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	frame_shift_ins	c.102_101	p.I35fs	0.628:0.970	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	109	0	0	20	27	57.45	-	-	-	A	41533124	-	A	41533123	7	5	195	1	0	1	1	0	0	0	0	0	5090	1741	61	0	1785	0	ELF1	13	41533123	Frame_Shift_Ins	INS	-	TCGA-A8-A08L-01A-11W-A019-09	8601056	41533123	73636755	137	11903										
FAM155A	0	genome.wustl.edu	37	chr13	108518300	108518300	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	taaaaatccgacaagttccaGagcggagtgggatgcttgct	12	8	0	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	13	108518300	108518300	G	C	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	silent	c.645	p.L215	0.969	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	70	0	0	35	13	27.08	-	-	-	C	108518300	G	C	108518300	2	2	195	1	0	0	0	0	0	0	0	1	5505	929	33	2		2	FAM155A	13	108518300	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	66985177	108518300	6651578	138	11904										
PCID2	0	genome.wustl.edu	37	chr13	113849401	113849401	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttacattattggcaaacactCgaaggtcaagcgctactgca	8	10	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	13	113849401	113849401	C	G	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	missense	c.509	p.R170P	1.000	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	111	0	0	160	44	21.57	-	-	-	G	113849401	C	G	113849401	3	3	195	1	0	0	0	0	1	0	0	0	11652	884	31	3	888	3	PCID2	13	113849401	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	5331101	113849401	1320477	139	11905										
MYH7	0	genome.wustl.edu	37	chr14	23897763	23897763	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atgccaaagtcaatgaatgtCcactcgatgccctccttctt	6	13	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	23897763	23897763	C	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.1524	p.W508C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	199	0	0	127	51	28.65	-	-	-	A	23897763	C	A	23897763	3	1	195	1	0	0	0	0	1	0	0	0	10111	856	30	2	4387	2	MYH7	14	23897763	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		23897763	83451777	140	11906										
ADCY4	0	genome.wustl.edu	37	chr14	24793371	24793371	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ggccagacagtgcaggcagcCagtgcagcatcttggggcct	15	12	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	24793371	24793371	C	A	SNP	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	missense	c.1943	p.W648L	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	82	0	0	24	16	40	-	-	-	A	24793371	C	A	24793371	3	1	195	1	0	0	0	0	1	0	0	0	296	595	21	4	1330	4	ADCY4	14	24793371	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	895608	24793371	82556169	141	11907										
RIPK3	0	genome.wustl.edu	37	chr14	24808754	24808754	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gcctttgccgacgagctcctGgttctccagttcctcgatgg	11	14	1	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	24808754	24808754	G	A	SNP	RIPK3	ENST00000216274	human	ensembl	69_37n	-1	known	nonsense	c.70	p.Q24*	0.007	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK3	HGNC	ENSG00000129465	123	0	0	25	12	32.43	-	-	-	A	24808754	G	A	24808754	4	1	195	1	0	0	0	0	0	1	0	0	13468	1357	47	4	1522	4	RIPK3	14	24808754	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	15383	24808754	82540786	142	11908										
ERO1L	0	genome.wustl.edu	37	chr14	53150583	53150583	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtagttattaaatctatcaaTggtttcaacatcacaggtac	6	7	4	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	53150583	53150583	T	C	SNP	ERO1L	ENST00000395686	human	ensembl	69_37n	-1	known	missense	c.157	p.I53V	1.000	superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	-	no_errors	ERO1L	HGNC	ENSG00000197930	75	0	0	69	11	13.75	-	-	-	C	53150583	T	C	53150583	3	2	195	1	0	0	0	0	1	0	0	0	5276	1464	51	5	1309	5	ERO1L	14	53150583	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	28341829	53150583	54198957	143	11909										
PSMC6	0	genome.wustl.edu	37	chr14	53187699	53187699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gaagattagatagaaaaataCgtgagttaagattctttacc	8	4	1	5			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	53187699	53187699	C	T	SNP	PSMC6	ENST00000445930	human	ensembl	69_37n	1	known	missense	c.940	p.H314Y	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519	169	0	0	146	75	33.78	-	-	-	T	53187699	C	T	53187699	3	4	195	1	0	0	0	0	1	0	0	0	12771	550	19	1	982	1	PSMC6	14	53187699	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	37116	53187699	54161841	144	11910										
KTN1	0	genome.wustl.edu	37	chr14	56085923	56085923	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atgctgaagtgaagtttaaaGattttcttctgtccttgaag	9	5	2	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	56085923	56085923	G	C	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.856	p.D286H	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	288	0	0	407	235	36.6	-	-	-	C	56085923	G	C	56085923	3	2	195	1	0	0	0	0	1	0	0	0	8639	942	33	2	870	2	KTN1	14	56085923	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	2898224	56085923	51263617	145	11911										
POMT2	0	genome.wustl.edu	37	chr14	77769225	77769225	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atgctcagcatggcagccatGatgaagaacatcaggatggg	13	8	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	77769225	77769225	G	C	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	missense	c.609	p.I203M	1.000	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830	30	0	0	10	11	52.38	-	-	-	C	77769225	G	C	77769225	3	2	195	1	0	0	0	0	1	0	0	0	12320	1280	45	2	1711	2	POMT2	14	77769225	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	21683302	77769225	29580315	146	11912										
SERPINA1	0	genome.wustl.edu	37	chr14	94849023	94849023	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccttgagtacccttctccacGtaatcgttgatctgtttctt	6	12	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	94849023	94849023	G	C	SNP	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	nonsense	c.552	p.Y184*	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249	153	0	0	40	44	52.38	-	-	-	C	94849023	G	C	94849023	4	2	195	1	0	0	0	0	0	1	0	0	14174	1140	40	3	720	3	SERPINA1	14	94849023	Nonsense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	17079798	94849023	12500517	147	11913										
CLMN	0	genome.wustl.edu	37	chr14	95677072	95677072	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agggcatcctgtgcgatgctGaaagccttctctagattttc	10	10	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	14	95677072	95677072	G	A	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	silent	c.753	p.F251	0.995	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	204	0	0	172	23	11.79	-	-	-	A	95677072	G	A	95677072	2	1	195	1	0	0	0	0	0	0	0	1	3572	1281	45	2		2	CLMN	14	95677072	Silent	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	828049	95677072	11672468	148	11914										
HERC2	0	genome.wustl.edu	37	chr15	28478454	28478454	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttcgatgacaggagcgcagaCctccttgtaagaacggccct	11	12	0	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	15	28478454	28478454	C	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.4513	p.V1505F	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	183	0	0	80	97	54.8	-	-	-	A	28478454	C	A	28478454	3	1	195	1	0	0	0	0	1	0	0	0	7109	507	18	4	10247	4	HERC2	15	28478454	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		28478454	74052938	149	11915										
CILP	0	genome.wustl.edu	37	chr15	65497689	65497689	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tcactgcacagcgacaccatCtctgccaagcaaatgcgtgt	8	14	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	15	65497689	65497689	C	G	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.540	p.E180D	0.990	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	86	0	0	21	10	32.26	-	-	-	G	65497689	C	G	65497689	3	3	195	1	0	0	0	0	1	0	0	0	3458	912	32	2	3034	2	CILP	15	65497689	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	37019235	65497689	37033703	150	11916										
ALDH1A3	0	genome.wustl.edu	37	chr15	101447358	101447358	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtgcaaccaatactgaagttCaaaagtatcgaagaagtgat	9	6	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	15	101447358	101447358	C	G	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	missense	c.1266	p.F422L	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	181	0	0	96	46	32.17	-	-	-	G	101447358	C	G	101447358	3	3	195	1	0	0	0	0	1	0	0	0	492	825	29	2	1308	2	ALDH1A3	15	101447358	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	35949669	101447358	1084034	151	11917										
SRRM2	0	genome.wustl.edu	37	chr16	2812610	2812610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caggagagggaggtctcggtCtaggacaccaagacgaggaa	16	8	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	2812610	2812610	C	G	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.2081	p.S694C	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	555	1	0.18	213	95	30.74	-	-	-	G	2812610	C	G	2812610	3	3	195	1	0	0	0	0	1	0	0	0	15260	913	32	2	2119	2	SRRM2	16	2812610	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		2812610	87542143	152	11918										
SRRM2	0	genome.wustl.edu	37	chr16	2816258	2816258	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gacttcagtgactcgacgaaGatcccggtcaagagcatccc	10	13	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	2816258	2816258	G	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.5729	p.R1910T	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	274	0	0	77	46	37.4	-	-	-	C	2816258	G	C	2816258	3	2	195	1	0	0	0	0	1	0	0	0	15260	942	33	2	5767	2	SRRM2	16	2816258	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	3648	2816258	87538495	153	11919										
SRRM2	0	genome.wustl.edu	37	chr16	2816377	2816377	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gccgccgctcccgttctagaActccaccagtgactcgcaga	9	17	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	2816377	2816377	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.5848	p.T1950P	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	286	1	0.35	83	47	36.15	-	-	-	C	2816377	A	C	2816377	3	2	195	1	0	0	0	0	1	0	0	0	15260	43	2	5	5886	5	SRRM2	16	2816377	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	119	2816377	87538376	154	11920										
ZNF263	0	genome.wustl.edu	37	chr16	3336096	3336096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gcatcaggatcctagtaagaGggccctctccagggacacgg	13	12	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	3336096	3336096	G	C	SNP	ZNF263	ENST00000219069	human	ensembl	69_37n	1	known	missense	c.716	p.R239T	0.973	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	127	0	0	26	11	29.73	-	-	-	C	3336096	G	C	3336096	3	2	195	1	0	0	0	0	1	0	0	0	17899	1000	35	4	730	4	ZNF263	16	3336096	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	519719	3336096	87018657	155	11921										
MYH11	0	genome.wustl.edu	37	chr16	15854467	15854467	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gaggagtgaggatggatctgGtgaaatctgtcacattaatt	13	4	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	15854467	15854467	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.1199	p.T400N	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	601	0	0	432	246	36.12	-	-	-	T	15854467	G	T	15854467	3	4	195	1	0	0	0	0	1	0	0	0	10103	1261	44	4	4899	4	MYH11	16	15854467	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	12518371	15854467	74500286	156	11922										
NOMO2	0	genome.wustl.edu	37	chr16	18549937	18549937	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aggtgctctttctgagcatgGatggtgtatgtccctgtggt	14	7	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	18549937	18549937	G	C	SNP	NOMO2	ENST00000381474	human	ensembl	69_37n	-1	known	missense	c.1131	p.I377M	0.995	pfam_DUF2012,superfamily_Carb-bd-like_fold	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	272	0	0	190	114	37.38	-	-	-	C	18549937	G	C	18549937	3	2	195	1	0	0	0	0	1	0	0	0	10604	1164	41	2	2764	2	NOMO2	16	18549937	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	2695470	18549937	71804816	157	11923										
GP2	0	genome.wustl.edu	37	chr16	20329728	20329728	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgacaatgaactctccattCccgtccacactgacgttcag	6	15	2	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	20329728	20329728	C	G	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	silent	c.1041	p.G347	0.089	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	545	0	0	324	157	32.57	-	-	-	G	20329728	C	G	20329728	2	3	195	1	0	0	0	0	0	0	0	1	6632	842	30	2		2	GP2	16	20329728	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1779791	20329728	70025025	158	11924										
SPN	0	genome.wustl.edu	37	chr16	29675524	29675524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccacggcagctagctctctgGagacctccagaggcacctct	10	16	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	29675524	29675524	G	C	SNP	SPN	ENST00000360121	human	ensembl	69_37n	1	known	missense	c.475	p.E159Q	0.042	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471	204	0	0	57	32	35.96	-	-	-	C	29675524	G	C	29675524	3	2	195	1	0	0	0	0	1	0	0	0	15164	1175	41	2	477	2	SPN	16	29675524	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	9345796	29675524	60679229	159	11925										
C16orf93	0	genome.wustl.edu	37	chr16	30770365	30770365	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctggtggggccactgtctctAgttcctctttctgcggggta	13	11	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	30770365	30770365	A	T	SNP	C16orf93	ENST00000543610	human	ensembl	69_37n	-1	known	missense	c.785	p.L262Q	0.000	NULL	NULL	-	no_errors	C16orf93	HGNC	ENSG00000196118	156	0	0	40	25	38.46	-	-	-	T	30770365	A	T	30770365	3	4	195	1	0	0	0	0	1	0	0	0	1859	420	15	5	218	5	C16orf93	16	30770365	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	1094841	30770365	59584388	160	11926										
DOK4	0	genome.wustl.edu	37	chr16	57507913	57507913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaatctgctccccctcttgtGtctggaaggtatagagtcct	9	11	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	57507913	57507913	G	T	SNP	DOK4	ENST00000340099	human	ensembl	69_37n	-1	known	missense	c.638	p.T213K	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK4	HGNC	ENSG00000125170	107	0	0	16	14	45.16	-	-	-	T	57507913	G	T	57507913	3	4	195	1	0	0	0	0	1	0	0	0	4734	1377	48	4	354	4	DOK4	16	57507913	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	26737548	57507913	32846840	161	11927										
NFAT5	0	genome.wustl.edu	37	chr16	69725789	69725789	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagcagattcagcccaaggcAtacaacccagagaccctgac	8	15	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	69725789	69725789	A	T	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	silent	c.2061	p.A687	0.783	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	485	0	0	521	255	32.82	-	-	-	T	69725789	A	T	69725789	2	4	195	1	0	0	0	0	0	0	0	1	10432	204	8	5		5	NFAT5	16	69725789	Silent	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	12217876	69725789	20628964	162	11928										
ZNF19	0	genome.wustl.edu	37	chr16	71512160	71512160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cgtttttggtcctctctgctGggggatcatcctgtgcttcc	11	12	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	71512160	71512160	G	A	SNP	ZNF19	ENST00000288177	human	ensembl	69_37n	-1	known	missense	c.245	p.P82L	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF19	HGNC	ENSG00000157429	90	0	0	67	24	26.37	-	-	-	A	71512160	G	A	71512160	3	1	195	1	0	0	0	0	1	0	0	0	17851	1348	47	4	1139	4	ZNF19	16	71512160	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	1786371	71512160	18842593	163	11929										
TERF2IP	0	genome.wustl.edu	37	chr16	75690231	75690231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aagaagaagaaaaagtttctCaaccagaggtgggagctgcc	12	7	1	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	16	75690231	75690231	C	G	SNP	TERF2IP	ENST00000300086	human	ensembl	69_37n	1	putative	missense	c.922	p.Q308E	0.009	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848	177	0	0	121	98	44.75	-	-	-	G	75690231	C	G	75690231	3	3	195	1	0	0	0	0	1	0	0	0	15858	827	29	2	932	2	TERF2IP	16	75690231	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	4178071	75690231	14664522	164	11930										
ATP2A3	0	genome.wustl.edu	37	chr17	3846793	3846793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gctgtctccgtggcctctccCaccttctcatacacaccctt	5	19	3	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	3846793	3846793	C	T	SNP	ATP2A3	ENST00000359983	human	ensembl	69_37n	-1	known	silent	c.1311	p.V437	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A3	HGNC	ENSG00000074370	187	0	0	17	24	57.14	-	-	-	T	3846793	C	T	3846793	2	4	195	1	0	0	0	0	0	0	0	1	1142	581	21	4		4	ATP2A3	17	3846793	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		3846793	77348417	165	11931										
NLE1	0	genome.wustl.edu	37	chr17	33463426	33463426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aactgaggcctcagcaggttCaaaggccccagtgcgcaggg	14	12	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	33463426	33463426	C	G	SNP	NLE1	ENST00000442241	human	ensembl	69_37n	-1	known	missense	c.919	p.E307Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep,prints_Gprotein_B	-	no_errors	NLE1	HGNC	ENSG00000073536	187	0	0	67	35	34.31	-	-	-	G	33463426	C	G	33463426	3	3	195	1	0	0	0	0	1	0	0	0	10532	835	29	2	562	2	NLE1	17	33463426	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	29616633	33463426	47731784	166	11932										
KRTAP3-2	0	genome.wustl.edu	37	chr17	39155853	39155853	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctcacagcagggctgagtgaAggtggtgaggttgagggtct	18	6	2	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	39155853	39155853	A	T	SNP	KRTAP3-2	ENST00000391587	human	ensembl	69_37n	-1	known	missense	c.253	p.F85I	0.413	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-2	HGNC	ENSG00000212900	68	0	0	58	33	35.87	-	-	-	T	39155853	A	T	39155853	3	4	195	1	0	0	0	0	1	0	0	0	8600	72	3	5	47	5	KRTAP3-2	17	39155853	Missense_Mutation	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	5692427	39155853	42039357	167	11933										
GPATCH8	0	genome.wustl.edu	37	chr17	42478549	42478549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tggcaaaagaaaatgacactCccaatttttgcaatggggtc	9	8	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	42478549	42478549	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	missense	c.896	p.G299E	1.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	286	0	0	124	160	56.34	-	-	-	T	42478549	C	T	42478549	3	4	195	1	0	0	0	0	1	0	0	0	6644	855	30	2	3616	2	GPATCH8	17	42478549	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3322696	42478549	38716661	168	11934										
DGKE	0	genome.wustl.edu	37	chr17	54926210	54926210	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aagcagatggaattaaactaGatcggtaagttacgtttccc	9	7	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	54926210	54926210	G	C	SNP	DGKE	ENST00000284061	human	ensembl	69_37n	1	known	missense	c.1042	p.D348H	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933	74	0	0	99	100	50	-	-	-	C	54926210	G	C	54926210	3	2	195	1	0	0	0	0	1	0	0	0	4504	942	33	2	1060	2	DGKE	17	54926210	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	12447661	54926210	26269000	169	11935										
C17orf47	0	genome.wustl.edu	37	chr17	56620129	56620129	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gccttctctctctggaacttCagatcctcacagaaagggct	8	13	4	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	56620129	56620129	C	T	SNP	C17orf47	ENST00000321691	human	ensembl	69_37n	-1	known	silent	c.1419	p.L473	0.000	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013	165	1	0.6	167	23	12.04	-	-	-	T	56620129	C	T	56620129	2	4	195	1	0	0	0	0	0	0	0	1	1873	813	29	2		2	C17orf47	17	56620129	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1693919	56620129	24575081	170	11936										
CACNG4	0	genome.wustl.edu	37	chr17	65026915	65026915	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gccctccagggacgtgtcgcCcatgggcctgaagatcacag	13	14	1	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	65026915	65026915	C	A	SNP	CACNG4	ENST00000262138	human	ensembl	69_37n	1	known	missense	c.779	p.P260H	0.953	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461	268	0	0	150	43	22.16	-	-	-	A	65026915	C	A	65026915	3	1	195	1	0	0	0	0	1	0	0	0	2584	623	22	4	793	4	CACNG4	17	65026915	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	8406786	65026915	16168295	171	11937										
ABCA8	0	genome.wustl.edu	37	chr17	66871764	66871764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caggcactcacctcaacctcCcagataccatgatggccact	6	17	2	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	17	66871764	66871764	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.4481	p.G1494E	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	106	0	0	71	76	51.7	-	-	-	T	66871764	C	T	66871764	3	4	195	1	0	0	0	0	1	0	0	0	38	623	22	4	404	4	ABCA8	17	66871764	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	1844849	66871764	14323446	172	11938										
TYK2	0	genome.wustl.edu	37	chr19	10475330	10475330	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	atcccggatgctcatcaccaGccgtgggggagccacctcgt	12	15	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	10475330	10475330	G	C	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	missense	c.1327	p.L443V	0.818	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	32	0	0	11	6	35.29	-	-	-	C	10475330	G	C	10475330	3	2	195	1	0	0	0	0	1	0	0	0	16907	962	34	4	2304	4	TYK2	19	10475330	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09		10475330	48653653	173	11939										
ATG4D	0	genome.wustl.edu	37	chr19	10655730	10655730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gggggctgcctgacctcggaCtgtggctgggggtgcatgtt	19	9	0	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	10655730	10655730	C	A	SNP	ATG4D	ENST00000309469	human	ensembl	69_37n	1	known	missense	c.417	p.D139E	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734	101	1	0.98	26	11	29.73	-	-	-	A	10655730	C	A	10655730	3	1	195	1	0	0	0	0	1	0	0	0	1103	564	20	4	427	4	ATG4D	19	10655730	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	180400	10655730	48473253	174	11940										
ZNF440	0	genome.wustl.edu	37	chr19	11943461	11943461	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	aaactctatgaatgcaagcaAcgttcagtagttccttcagt	7	9	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	11943461	11943461	A	G	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	1	known	silent	c.1470	p.Q490	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	216	2	0.92	185	91	32.97	-	-	-	G	11943461	A	G	11943461	2	3	195	1	0	0	0	0	0	0	0	1	18009	40	2	5		5	ZNF440	19	11943461	Silent	SNP	A	TCGA-A8-A08L-01A-11W-A019-09	1287731	11943461	47185522	175	11941										
ZNF625	0	genome.wustl.edu	37	chr19	12256910	12256910	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctattaagggatgcatgaccCacgctgacttctccacatga	8	12	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	12256910	12256910	C	T	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	silent	c.321	p.V107	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	195	0	0	94	44	31.88	-	-	-	T	12256910	C	T	12256910	2	4	195	1	0	0	0	0	0	0	0	1	18145	581	21	4		4	ZNF625	19	12256910	Silent	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	313449	12256910	46872073	176	11942										
OR10H1	0	genome.wustl.edu	37	chr19	15918164	15918164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cgaccttcagcagaagggatCttcaagatggcggccacgat	12	11	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	15918164	15918164	C	G	SNP	OR10H1	ENST00000334920	human	ensembl	69_37n	-1	known	missense	c.684	p.K228N	0.858	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H1	HGNC	ENSG00000186723	151	0	0	102	46	31.08	-	-	-	G	15918164	C	G	15918164	3	3	195	1	0	0	0	0	1	0	0	0	10978	912	32	2	276	2	OR10H1	19	15918164	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	3661254	15918164	43210819	177	11943										
CEACAM21	0	genome.wustl.edu	37	chr19	42085717	42085717	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tatccacagagtcagtggctCagccctccatccaagccagc	8	16	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	42085717	42085717	C	T	SNP	CEACAM21	ENST00000401445	human	ensembl	69_37n	1	known	nonsense	c.436	p.Q146*	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM21	HGNC	ENSG00000007129	206	0	0	44	59	57.28	-	-	-	T	42085717	C	T	42085717	4	4	195	1	0	0	0	0	0	1	0	0	3221	827	29	2	446	2	CEACAM21	19	42085717	Nonsense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	26167553	42085717	17043266	178	11944										
MEGF8	0	genome.wustl.edu	37	chr19	42838297	42838298	+	Frame_Shift_Ins	INS	-	-	G													0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gtgtgcctgcgagccgggctINSgggggggtcctgactgtggc							TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	42838297	42838298	-	G	INS	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	frame_shift_ins	c.490_491	p.P167fs	1.000:1.000	smart_EGF-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	25	0	0	4	2	33.33	-	-	-	G	42838298	-	G	42838297	7	5	195	1	0	1	1	0	0	0	0	0	9534	1580	55	0	500	0	MEGF8	19	42838297	Frame_Shift_Ins	INS	-	TCGA-A8-A08L-01A-11W-A019-09	752580	42838297	16290686	179	11945										
ZNF845	0	genome.wustl.edu	37	chr19	53855591	53855591	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agaaaccttaccagtgtaatGagtgtggcaaagcctttcgt	10	8	0	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	53855591	53855591	G	C	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.1663	p.E555Q	0.034	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	188	0	0	145	22	13.17	-	-	-	C	53855591	G	C	53855591	3	2	195	1	0	0	0	0	1	0	0	0	18284	1291	45	2	1673	2	ZNF845	19	53855591	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	11017294	53855591	5273392	180	11946										
KIR3DL2	0	genome.wustl.edu	37	chr19	55378001	55378001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctgatgaacaagaccctcagGaggtgacgtacgcacagttg	12	10	1	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	19	55378001	55378001	G	A	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.1183	p.E395K	0.041	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	958	1	0.1	964	195	16.8	-	-	-	A	55378001	G	A	55378001	3	1	195	1	0	0	0	0	1	0	0	0	8374	1175	41	2	1217	2	KIR3DL2	19	55378001	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	1522410	55378001	3750982	181	11947										
PLCB4	0	genome.wustl.edu	37	chr20	9449256	9449256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	agcacaccaggctaagatttCtatggaaaatagcaaagcca	8	9	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	20	9449256	9449256	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.3251	p.S1084F	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	321	0	0	130	159	55.02	-	-	-	T	9449256	C	T	9449256	3	4	195	1	0	0	0	0	1	0	0	0	12104	913	32	2	3417	2	PLCB4	20	9449256	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		9449256	53576264	182	11948										
NAA20	0	genome.wustl.edu	37	chr20	20013817	20013817	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tacctcatcctgtgaggcctGaagacattgaataaccctgg	9	11	1	4			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	20	20013817	20013817	G	C	SNP	NAA20	ENST00000334982	human	ensembl	69_37n	1	known	missense	c.523	p.E175Q	0.999	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418	274	0	0	152	44	22.34	-	-	-	C	20013817	G	C	20013817	3	2	195	1	0	0	0	0	1	0	0	0	10192	1291	45	2	566	2	NAA20	20	20013817	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	10564561	20013817	43011703	183	11949										
RALGAPA2	0	genome.wustl.edu	37	chr20	20585841	20585841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ttgcctcgttgcttcttttcCttttgttcacttaatttatc	4	10	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	20	20585841	20585841	C	T	SNP	RALGAPA2	ENST00000430436	human	ensembl	69_37n	-1	known	missense	c.1466	p.R489K	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGAPA2	HGNC	ENSG00000188559	112	0	0	109	46	29.68	-	-	-	T	20585841	C	T	20585841	3	4	195	1	0	0	0	0	1	0	0	0	13097	680	24	4	3705	4	RALGAPA2	20	20585841	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	572024	20585841	42439679	184	11950										
PREX1	0	genome.wustl.edu	37	chr20	47266010	47266010	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cccgaagctgccatcatggaGaccctggccttggggatcac	12	14	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	20	47266010	47266010	G	A	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.3133	p.L1045F	0.018	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	48	0	0	15	9	37.5	-	-	-	A	47266010	G	A	47266010	3	1	195	1	0	0	0	0	1	0	0	0	12557	942	33	2	1910	2	PREX1	20	47266010	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	26680169	47266010	15759510	185	11951										
BCAS1	0	genome.wustl.edu	37	chr20	52574001	52574001	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gagtctttcccatttatttcTtctgagtgggtgatccctcc	8	11	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	20	52574001	52574001	T	C	SNP	BCAS1	ENST00000422805	human	ensembl	69_37n	-1	putative	missense	c.374	p.K125R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCAS1	HGNC	ENSG00000064787	132	0	0	116	114	49.57	-	-	-	C	52574001	T	C	52574001	3	2	195	1	0	0	0	0	1	0	0	0	1354	1606	56	5	380	5	BCAS1	20	52574001	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09	5307991	52574001	10451519	186	11952										
HSPA13	0	genome.wustl.edu	37	chr21	15745987	15745987	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	tattgggaatttctaaagcaCtgacttggagaggccaagag	12	6	1	3			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	21	15745987	15745987	C	G	SNP	HSPA13	ENST00000285667	human	ensembl	69_37n	-1	known	missense	c.1367	p.S456T	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA13	HGNC	ENSG00000155304	106	0	0	128	108	45.76	-	-	-	G	15745987	C	G	15745987	3	3	195	1	0	0	0	0	1	0	0	0	7459	565	20	4	52	4	HSPA13	21	15745987	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		15745987	32383908	187	11953										
GSTT1	0	genome.wustl.edu	37	chr22	24384222	24384222	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	cagcaggtccaggtacagctCcaggcccatagtggggaccg	14	13	0	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	22	24384222	24384222	C	G	SNP	GSTT1	ENST00000248935	human	ensembl	69_37n	-1	known	missense	c.10	p.E4Q	1.000	superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	GSTT1	HGNC	ENSG00000184674	39	0	0	5	10	66.67	-	-	-	G	24384222	C	G	24384222	3	3	195	1	0	0	0	0	1	0	0	0	6896	864	30	2	732	2	GSTT1	22	24384222	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09		24384222	26920344	188	11954										
DMD	0	genome.wustl.edu	37	chrX	32482764	32482764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	caagggcaggccattcctccTtcagaaaaacatcaacttca	6	13	3	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	X	32482764	32482764	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.3215	p.K1072R	0.997	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	384	0	0	362	189	34.24	-	-	-	C	32482764	T	C	32482764	3	2	195	1	0	0	0	0	1	0	0	0	4616	1609	56	5	8309	5	DMD	23	32482764	Missense_Mutation	SNP	T	TCGA-A8-A08L-01A-11W-A019-09		32482764	122787796	189	11955										
FOXR2	0	genome.wustl.edu	37	chrX	55650719	55650719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ccaagagaagtcctggcaaaGgccccctctcaattgtagcc	9	14	1	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	X	55650719	55650719	G	T	SNP	FOXR2	ENST00000339140	human	ensembl	69_37n	1	known	missense	c.575	p.R192M	0.003	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR2	HGNC	ENSG00000189299	187	0	0	128	87	40.47	-	-	-	T	55650719	G	T	55650719	3	4	195	1	0	0	0	0	1	0	0	0	6080	1000	35	4	577	4	FOXR2	23	55650719	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	23167955	55650719	99619841	190	11956										
FOXO4	0	genome.wustl.edu	37	chrX	70321379	70321379	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	ctggttcccaccctttctatGatagcaccacctccagtcat	5	16	2	1			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	X	70321379	70321379	G	A	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	missense	c.1299	p.M433I	0.035	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	190	0	0	91	36	28.35	-	-	-	A	70321379	G	A	70321379	3	1	195	1	0	0	0	0	1	0	0	0	6073	1290	45	2	1305	2	FOXO4	23	70321379	Missense_Mutation	SNP	G	TCGA-A8-A08L-01A-11W-A019-09	14670660	70321379	84949181	191	11957										
ATRX	0	genome.wustl.edu	37	chrX	76938062	76938062	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	catgatggtcgtgtctttatCaactgtgccttctgctgaag	10	9	3	2			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	X	76938062	76938062	C	G	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.2686	p.D896H	0.639	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	456	0	0	566	284	33.41	-	-	-	G	76938062	C	G	76938062	3	3	195	1	0	0	0	0	1	0	0	0	1212	826	29	2	4900	2	ATRX	23	76938062	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	6616683	76938062	78332498	192	11958										
ODZ1	0	genome.wustl.edu	37	chrX	123785795	123785795	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.291666666666667	56	2.33138602441286e-14	3.0367558239862	4.01827868852459	1.94617486338798	0.000103734750960438	0.00338175288131028	38	gttaacacgaatacttgctcCatcttttttccatcattgta	4	10	2	0			TCGA-A8-A08L-01A-11W-A019-09	TCGA-A8-A08L-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b819a59-f0c1-456a-9e81-64b5bed025c1	3f7a64f1-bed9-4e3f-9109-09c320e2fc96	X	123785795	123785795	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.1548	p.M516I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	240	0	0	200	104	34.1	-	-	-	G	123785795	C	G	123785795	3	3	195	1	0	0	0	0	1	0	0	0	10907	594	21	4	6750	4	ODZ1	23	123785795	Missense_Mutation	SNP	C	TCGA-A8-A08L-01A-11W-A019-09	46847733	123785795	31484765	193	11959										
PADI1	0	genome.wustl.edu	37	chr1	17567195	17567195	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ctggcagagagtgacatcgtGgacattccccagctcttctt	10	12	2	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	1	17567195	17567195	G	T	SNP	PADI1	ENST00000375471	human	ensembl	69_37n	1	known	silent	c.1698	p.V566	0.980	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623	67	0	0	31	16	34.04	-	-	-	T	17567195	G	T	17567195	2	4	196	1	0	0	0	0	0	0	0	1	11450	1335	47	4		4	PADI1	1	17567195	Silent	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		17567195	231683426	1	11960										
CD1D	0	genome.wustl.edu	37	chr1	158151458	158151458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gcatatatttcgggtttatcGaagcagcttcaccagggacg	11	9	1	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	1	158151458	158151458	G	A	SNP	CD1D	ENST00000368171	human	ensembl	69_37n	1	known	missense	c.275	p.R92Q	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1D	HGNC	ENSG00000158473	125	0	0	62	40	39.22	-	-	-	A	158151458	G	A	158151458	3	1	196	1	0	0	0	0	1	0	0	0	3006	1058	37	1	281	1	CD1D	1	158151458	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09	140584263	158151458	91099163	2	11961										
SPATA17	0	genome.wustl.edu	37	chr1	217975165	217975165	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	aaagaacaattccgaagtgaAaatcctaagaaatggatctg	8	6	1	3			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	1	217975165	217975165	A	G	SNP	SPATA17	ENST00000366933	human	ensembl	69_37n	1	known	silent	c.978	p.E326	0.980	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814	70	0	0	45	24	34.78	-	-	-	G	217975165	A	G	217975165	2	3	196	1	0	0	0	0	0	0	0	1	15093	11	1	5		5	SPATA17	1	217975165	Silent	SNP	A	TCGA-A8-A08O-01A-21W-A071-09	59823707	217975165	31275456	3	11962										
APOB	0	genome.wustl.edu	37	chr2	21234125	21234125	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	tggctgaagccagcccagcgAtgtctgtgttgagccgatgg	15	10	1	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	2	21234125	21234125	A	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.5615	p.I1872N	0.076	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	231	0	0	195	47	19.34	-	-	-	T	21234125	A	T	21234125	3	4	196	1	0	0	0	0	1	0	0	0	787	333	12	5	8092	5	APOB	2	21234125	Missense_Mutation	SNP	A	TCGA-A8-A08O-01A-21W-A071-09		21234125	221965248	4	11963										
TRANK1	0	genome.wustl.edu	37	chr3	36874921	36874921	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	tggttgagcgtgtcaaacttGaagaaggcatccctgagctt	12	8	1	4			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	3	36874921	36874921	G	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.6021	p.F2007L	0.069	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	70	0	0	31	15	32.61	-	-	-	C	36874921	G	C	36874921	3	2	196	1	0	0	0	0	1	0	0	0	16550	1281	45	2	2768	2	TRANK1	3	36874921	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		36874921	161147509	5	11964										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	170	0	0	120	39	24.53	-	-	-	G	178952085	A	G	178952085	3	3	196	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A08O-01A-21W-A071-09	142077164	178952085	19070345	6	11965										
EGF	0	genome.wustl.edu	37	chr4	110901145	110901145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	caggtcacccatttgctgtaGcagtgtttgaggattatgtg	12	7	1	1			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	4	110901145	110901145	G	A	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	missense	c.2071	p.A691T	0.993	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	245	0	0	139	87	38.33	-	-	-	A	110901145	G	A	110901145	3	1	196	1	0	0	0	0	1	0	0	0	4997	971	34	4	2125	4	EGF	4	110901145	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		110901145	80253131	7	11966										
PPP2CA	0	genome.wustl.edu	37	chr5	133537565	133537565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	atccaccaaggcagtgagagGaagatagtcaaaaagatctg	11	7	2	3			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	5	133537565	133537565	G	A	SNP	PPP2CA	ENST00000481195	human	ensembl	69_37n	-1	known	missense	c.460	p.P154S	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CA	HGNC	ENSG00000113575	98	0	0	59	15	20.27	-	-	-	A	133537565	G	A	133537565	3	1	196	1	0	0	0	0	1	0	0	0	12457	1174	41	2	489	2	PPP2CA	5	133537565	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		133537565	47377695	8	11967										
TAF1L	0	genome.wustl.edu	37	chr9	32633083	32633083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ctttactcttccagaaaaggCggtaaataaaaacctgtaga	7	8	1	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	9	32633083	32633083	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2495	p.R832H	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	235	0	0	148	39	20.63	-	-	-	T	32633083	C	T	32633083	3	4	196	1	0	0	0	0	1	0	0	0	15615	768	27	1	2989	1	TAF1L	9	32633083	Missense_Mutation	SNP	C	TCGA-A8-A08O-01A-21W-A071-09		32633083	108580348	9	11968										
LDB1	0	genome.wustl.edu	37	chr10	103869779	103869779	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gtcaaacatgaactccaggtAcaaccggccctccacacaca	6	16	1	1			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	10	103869779	103869779	A	G	SNP	LDB1	ENST00000425280	human	ensembl	69_37n	-1	known	missense	c.547	p.Y183H	1.000	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728	52	0	0	34	8	19.05	-	-	-	G	103869779	A	G	103869779	3	3	196	1	0	0	0	0	1	0	0	0	8749	391	14	5	708	5	LDB1	10	103869779	Missense_Mutation	SNP	A	TCGA-A8-A08O-01A-21W-A071-09		103869779	31664968	10	11969										
OR8K1	0	genome.wustl.edu	37	chr11	56114030	56114030	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	acaattaagttatttaaactGtccttctgtggctcaaacat	5	8	2	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	11	56114030	56114030	G	A	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	silent	c.516	p.L172	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	308	1	0.32	239	108	31.12	-	-	-	A	56114030	G	A	56114030	2	1	196	1	0	0	0	0	0	0	0	1	11316	1364	48	4		4	OR8K1	11	56114030	Silent	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		56114030	78892486	11	11970										
ROBO3	0	genome.wustl.edu	37	chr11	124740064	124740064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	tcactaccactccatagagcGtccctcattcctgcgcagac	6	17	2	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	11	124740064	124740064	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.770	p.R257H	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	104	0	0	26	9	25.71	-	-	-	A	124740064	G	A	124740064	3	1	196	1	0	0	0	0	1	0	0	0	13601	1145	40	1	788	1	ROBO3	11	124740064	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09	68626034	124740064	10266452	12	11971										
ATF7IP	0	genome.wustl.edu	37	chr12	14631311	14631311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ttcttctcagcctgtgtcacGaccattgcaacccatacaac	5	15	3	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	12	14631311	14631311	G	A	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	missense	c.3002	p.R1001Q	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	363	0	0	191	100	34.36	-	-	-	A	14631311	G	A	14631311	3	1	196	1	0	0	0	0	1	0	0	0	1091	1058	37	1	3044	1	ATF7IP	12	14631311	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		14631311	119220584	13	11972										
MYL6	0	genome.wustl.edu	37	chr12	56554049	56554049	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gagaagatgacagaggaagaAgtagagatgctggtggcagg	18	3	0	6			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	12	56554049	56554049	A	C	SNP	MYL6	ENST00000547649	human	ensembl	69_37n	1	known	missense	c.372	p.E124D	1.000	smart_EF_hand_Ca-bd	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL6	HGNC	ENSG00000092841	121	0	0	68	22	24.44	-	-	-	C	56554049	A	C	56554049	3	2	196	1	0	0	0	0	1	0	0	0	10123	69	3	5	390	5	MYL6	12	56554049	Missense_Mutation	SNP	A	TCGA-A8-A08O-01A-21W-A071-09	41922738	56554049	77297846	14	11973										
PLEKHH1	0	genome.wustl.edu	37	chr14	68042723	68042723	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ttggcaccaagcatgaaaagGtaaggaagagggctgggcct	15	7	0	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	14	68042723	68042723	G	T	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	splice_site	c.2352+1	e15+1	1.000	-	-	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	78	0	0	22	4	15.38	-	-	-	T	68042723	G	T	68042723	5	4	196	1	0	0	0	0	0	0	1	0	12150	1275	44	4	2411	4	PLEKHH1	14	68042723	Splice_Site	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		68042723	39306817	15	11974										
TUBGCP4	0	genome.wustl.edu	37	chr15	43696712	43696712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ctactgttacgactagattaTaacaaatactatacccaggc	5	10	0	1			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	15	43696712	43696712	T	C	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	silent	c.1953	p.Y651	1.000	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	338	0	0	111	79	41.58	-	-	-	C	43696712	T	C	43696712	2	2	196	1	0	0	0	0	0	0	0	1	16865	1413	49	5		5	TUBGCP4	15	43696712	Silent	SNP	T	TCGA-A8-A08O-01A-21W-A071-09		43696712	58834680	16	11975										
FUS	0	genome.wustl.edu	37	chr16	31202420	31202420	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ggtggctttggccctggcaaGatggattccaggtaagactt	14	8	0	2			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	16	31202420	31202420	G	C	SNP	FUS	ENST00000254108	human	ensembl	69_37n	1	known	missense	c.1530	p.K510N	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280	51	0	0	33	18	35.29	-	-	-	C	31202420	G	C	31202420	3	2	196	1	0	0	0	0	1	0	0	0	6149	933	33	2	1584	2	FUS	16	31202420	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09		31202420	59152333	17	11976										
CSHL1	0	genome.wustl.edu	37	chr17	61988207	61988207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	aaaaagcctggataagggaaCggtttggacggcaccagcct	13	9	0	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	17	61988207	61988207	C	T	SNP	CSHL1	ENST00000309894	human	ensembl	69_37n	-1	known	missense	c.88	p.V30I	0.612	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSHL1	HGNC	ENSG00000204414	81	0	0	59	12	16.67	-	-	-	T	61988207	C	T	61988207	3	4	196	1	0	0	0	0	1	0	0	0	3974	536	19	1	596	1	CSHL1	17	61988207	Missense_Mutation	SNP	C	TCGA-A8-A08O-01A-21W-A071-09		61988207	19207003	18	11977										
PRKAR1A	0	genome.wustl.edu	37	chr17	66526534	66526534	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gtgttcttggcccatgctcaGacatcctcaaacgaaacatc	7	13	3	1			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	17	66526534	66526534	G	T	SNP	PRKAR1A	ENST00000358598	human	ensembl	69_37n	1	known	missense	c.1090	p.D364Y	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946	237	1	0.42	205	162	44.02	-	-	-	T	66526534	G	T	66526534	3	4	196	1	0	0	0	0	1	0	0	0	12584	942	33	2	1128	2	PRKAR1A	17	66526534	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09	4538327	66526534	14668676	19	11978										
ADA	0	genome.wustl.edu	37	chr20	43249699	43249699	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	cagtaaagcccatgtcccgtTtggtcatctggtaatcagtg	10	10	3	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	20	43249699	43249699	T	C	SNP	ADA	ENST00000372874	human	ensembl	69_37n	-1	known	missense	c.935	p.K312R	0.004	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839	85	0	0	42	15	26.32	-	-	-	C	43249699	T	C	43249699	3	2	196	1	0	0	0	0	1	0	0	0	230	1841	64	5	168	5	ADA	20	43249699	Missense_Mutation	SNP	T	TCGA-A8-A08O-01A-21W-A071-09		43249699	19775821	20	11979										
CARD10	0	genome.wustl.edu	37	chr22	37898726	37898727	+	Frame_Shift_Ins	INS	-	-	T													0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	ggaccagggcttaagtgtcaINScactccctggggaaaaagaa							TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	22	37898726	37898727	-	T	INS	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1670_1669	p.V557fs	1.000:0.998	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	10	0	0	4	2	33.33	-	-	-	T	37898727	-	T	37898726	7	5	196	1	0	1	1	0	0	0	0	0	2669	159	6	0	1468	0	CARD10	22	37898726	Frame_Shift_Ins	INS	-	TCGA-A8-A08O-01A-21W-A071-09		37898726	13405840	21	11980	141	2								
CARD10	0	genome.wustl.edu	37	chr22	37898728	37898729	+	Frame_Shift_Ins	INS	-	-	T													0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	accagggcttaagtgtcacaINSctccctggggaaaaagaatg							TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	22	37898728	37898729	-	T	INS	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1668_1667	p.S556fs	0.991:1.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	11	0	0	4	2	33.33	-	-	-	T	37898729	-	T	37898728	7	5	196	1	0	1	1	0	0	0	0	0	2669	156	6	0	1470	0	CARD10	22	37898728	Frame_Shift_Ins	INS	-	TCGA-A8-A08O-01A-21W-A071-09	2	37898728	13405838	22	11981	141	2								
CLCN4	0	genome.wustl.edu	37	chrX	10176393	10176393	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	gccatcactgccatcattgcCtaccccaatccctacacacg	4	19	2	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	X	10176393	10176393	C	T	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	silent	c.1152	p.A384	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	470	0	0	336	63	15.79	-	-	-	T	10176393	C	T	10176393	2	4	196	1	0	0	0	0	0	0	0	1	3495	668	24	4		4	CLCN4	23	10176393	Silent	SNP	C	TCGA-A8-A08O-01A-21W-A071-09		10176393	145094167	23	11982										
GDI1	0	genome.wustl.edu	37	chrX	153670141	153670141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.857283006460504	1.15873015873016	6.95238095238095	0	0.4	0.991179622791967	0	accaggtcaacaggaagtcaGgtaggccgggcgctggtaca	15	10	2	0			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc1398b9-d4ec-43e8-86bc-7025afaf93d5	ed048af2-2fc2-4c5c-9f8d-086a864a8b77	X	153670141	153670141	G	A	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	1	known	missense	c.991	p.D331N	1.000	pfam_GDP_dissociation_inhibitor,prints_RabGDI	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	42	0	0	15	14	48.28	-	-	-	A	153670141	G	A	153670141	3	1	196	1	0	0	0	0	1	0	0	0	6372	1014	35	4	1021	4	GDI1	23	153670141	Missense_Mutation	SNP	G	TCGA-A8-A08O-01A-21W-A071-09	143493748	153670141	1600419	24	11983										
EXTL1	0	genome.wustl.edu	37	chr1	26361666	26361667	+	Frame_Shift_Ins	INS	-	-	C													0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ccctcttaggcgcctgggggINScccggggcccaggccaaagc							TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	1	26361666	26361667	-	C	INS	EXTL1	ENST00000374280	human	ensembl	69_37n	1	known	frame_shift_ins	c.1859_1860	p.P623fs	0.000:0.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008	19	0	0	4	2	33.33	-	-	-	C	26361667	-	C	26361666	7	5	197	1	0	1	1	0	0	0	0	0	5362	1203	42	0	1901	0	EXTL1	1	26361666	Frame_Shift_Ins	INS	-	TCGA-A8-A08P-01A-11W-A019-09		26361666	222888955	1	11984										
SPRR2D	0	genome.wustl.edu	37	chr1	153012797	153012797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gaggtggctggcagggctgcTtgcactgctgctgttgataa	16	8	0	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	1	153012797	153012797	T	C	SNP	SPRR2D	ENST00000360379	human	ensembl	69_37n	-1	known	missense	c.26	p.K9R	1.000	NULL	NULL	-	no_errors	SPRR2D	HGNC	ENSG00000163216	155	0	0	229	38	14.18	-	-	-	C	153012797	T	C	153012797	3	2	197	1	0	0	0	0	1	0	0	0	15190	1609	56	5	196	5	SPRR2D	1	153012797	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09	126651131	153012797	96237824	2	11985										
MGAT4A	0	genome.wustl.edu	37	chr2	99272904	99272904	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ggtgatatgacttccaccaaGccagaactgatttctttaga	8	9	1	5			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	2	99272904	99272904	G	A	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	silent	c.609	p.G203	0.449	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	221	0	0	229	27	10.55	-	-	-	A	99272904	G	A	99272904	2	1	197	1	0	0	0	0	0	0	0	1	9616	958	34	4		4	MGAT4A	2	99272904	Silent	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		99272904	143926469	3	11986										
TRAK2	0	genome.wustl.edu	37	chr2	202272210	202272210	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gtgtggagactgagtccagtCttgattttcatatagaaaga	11	5	2	5			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	2	202272210	202272210	C	G	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.202	p.D68H	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	146	0	0	128	18	12.33	-	-	-	G	202272210	C	G	202272210	3	3	197	1	0	0	0	0	1	0	0	0	16546	913	32	2	2598	2	TRAK2	2	202272210	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	102999306	202272210	40927163	4	11987										
SCN10A	0	genome.wustl.edu	37	chr3	38760181	38760181	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ccagccagcaccaggcattgGtgaagtactttttgaagcca	10	11	0	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	38760181	38760181	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3644	p.T1215S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	147	0	0	130	86	39.63	-	-	-	C	38760181	G	C	38760181	3	2	197	1	0	0	0	0	1	0	0	0	14000	1261	44	4	2258	4	SCN10A	3	38760181	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		38760181	159262249	5	11988										
ACPP	0	genome.wustl.edu	37	chr3	132068766	132068766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	tgattcatcttctttaaggtGtcctggtcaatgaaatcctc	7	9	4	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	132068766	132068766	G	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.784	p.V262F	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	85	0	0	118	20	14.49	-	-	-	T	132068766	G	T	132068766	3	4	197	1	0	0	0	0	1	0	0	0	167	1377	48	4	814	4	ACPP	3	132068766	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09	93308585	132068766	65953664	6	11989										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	128	0	0	66	60	47.62	-	-	-	A	178936091	G	A	178936091	3	1	197	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09	46867325	178936091	19086339	7	11990										
ACAP2	0	genome.wustl.edu	37	chr3	195102673	195102673	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agaatactgagccaggtctcGaatcccattcatgaactgtt	8	10	2	3			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	195102673	195102673	G	A	SNP	ACAP2	ENST00000326793	human	ensembl	69_37n	-1	known	nonsense	c.190	p.R64*	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331	123	0	0	176	43	19.63	-	-	-	A	195102673	G	A	195102673	4	1	197	1	0	0	0	0	0	1	0	0	119	1066	37	1	2230	1	ACAP2	3	195102673	Nonsense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09	16166582	195102673	2919757	8	11991										
BRIX1	0	genome.wustl.edu	37	chr5	34924961	34924961	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ttttattaaagatcatagaaGaagatgctgctcttgtagaa	8	4	2	5			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	34924961	34924961	G	A	SNP	BRIX1	ENST00000336767	human	ensembl	69_37n	1	known	missense	c.673	p.E225K	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	68	0	0	43	8	15.69	-	-	-	A	34924961	G	A	34924961	3	1	197	1	0	0	0	0	1	0	0	0	1523	943	33	2	707	2	BRIX1	5	34924961	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		34924961	145990299	9	11992										
C5orf42	0	genome.wustl.edu	37	chr5	37179528	37179528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gggacttctgaaacctccaaCagattcttcaatgtcttcta	6	11	5	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	37179528	37179528	C	A	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.5755	p.V1919F	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	133	0	0	117	28	19.31	-	-	-	A	37179528	C	A	37179528	3	1	197	1	0	0	0	0	1	0	0	0	2322	478	17	4	3934	4	C5orf42	5	37179528	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	2254567	37179528	143735732	10	11993										
ACSL6	0	genome.wustl.edu	37	chr5	131325171	131325171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	acaattgtgctggagaagtcCggaccccagaaattcagccc	10	12	1	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	131325171	131325171	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	missense	c.481	p.G161R	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	138	0	0	127	19	13.01	-	-	-	T	131325171	C	T	131325171	3	4	197	1	0	0	0	0	1	0	0	0	181	661	23	1	1837	1	ACSL6	5	131325171	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	94145643	131325171	49590089	11	11994										
GFRA3	0	genome.wustl.edu	37	chr5	137599965	137599965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ctcaccaaggctgcgggcacGgtgaacggtccaatagatgt	13	11	1	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	137599965	137599965	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	69_37n	-1	known	missense	c.364	p.R122C	0.843	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	71	0	0	119	16	11.85	-	-	-	A	137599965	G	A	137599965	3	1	197	1	0	0	0	0	1	0	0	0	6401	1116	39	1	866	1	GFRA3	5	137599965	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09	6274794	137599965	43315295	12	11995										
ITPR3	0	genome.wustl.edu	37	chr6	33639885	33639885	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agccgcaagcagtccgtcttCagtgcccccagcctgtctgc	10	17	3	0			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	6	33639885	33639885	C	G	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.2808	p.F936L	0.920	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	15	0	0	12	10	45.45	-	-	-	G	33639885	C	G	33639885	3	3	197	1	0	0	0	0	1	0	0	0	7976	825	29	2	2894	2	ITPR3	6	33639885	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09		33639885	137475182	13	11996										
RRAGD	0	genome.wustl.edu	37	chr6	90088968	90088968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	taaagatgttcagcaaattcTccagagttgggagttgtgga	12	5	2	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	6	90088968	90088968	T	C	SNP	RRAGD	ENST00000369415	human	ensembl	69_37n	-1	known	missense	c.734	p.E245G	1.000	pfam_Gtr1_RagA	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGD	HGNC	ENSG00000025039	94	0	0	65	32	32.65	-	-	-	C	90088968	T	C	90088968	3	2	197	1	0	0	0	0	1	0	0	0	13761	1551	54	5	484	5	RRAGD	6	90088968	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09	56449083	90088968	81026099	14	11997										
HOXA1	0	genome.wustl.edu	37	chr7	27134950	27134950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ggagaagatgtctccgatgcGggggagcgacaggcttcttg	17	8	2	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	7	27134950	27134950	G	A	SNP	HOXA1	ENST00000355633	human	ensembl	69_37n	-1	known	missense	c.379	p.R127C	0.950	NULL	NULL	-	no_errors	HOXA1	HGNC	ENSG00000105991	54	0	0	42	18	30	-	-	-	A	27134950	G	A	27134950	3	1	197	1	0	0	0	0	1	0	0	0	7339	1116	39	1	433	1	HOXA1	7	27134950	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		27134950	132003713	15	11998										
MLL3	0	genome.wustl.edu	37	chr7	151891576	151891576	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gaggatcccatctagctgttCttcacttaatggtcgtgaac	9	10	3	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	7	151891576	151891576	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.4456	p.E1486*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	156	0	0	170	22	11.46	-	-	-	A	151891576	C	A	151891576	4	1	197	1	0	0	0	0	0	1	0	0	9693	922	32	2	10403	2	MLL3	7	151891576	Nonsense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	124756626	151891576	7247087	16	11999										
SCARA3	0	genome.wustl.edu	37	chr8	27528481	27528481	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ggcgtgaaagggcctgttggCggcagaggcccgaaaggaga	19	8	0	3			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	27528481	27528481	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	69_37n	1	known	silent	c.1434	p.G478	0.002	pfam_Collagen	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077	36	0	0	36	8	18.18	-	-	-	T	27528481	C	T	27528481	2	4	197	1	0	0	0	0	0	0	0	1	13966	755	27	1		1	SCARA3	8	27528481	Silent	SNP	C	TCGA-A8-A08P-01A-11W-A019-09		27528481	118835541	17	12000										
WDR67	0	genome.wustl.edu	37	chr8	124096492	124096494	+	In_Frame_Del	DEL	CTT	CTT	-													0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agggaaatatgccatcacaaCttcttctgatacagcacaat							TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	124096492	124096494	CTT	-	DEL	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	in_frame_del	c.431_433	p.S146in_frame_del	1.000:0.990:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	331	0	0	937	207	18.09	-	-	-	-	124096494	CTT	-	124096492	7	5	197	1	0	1	0	1	0	0	0	0	17415	565	20	0	445	0	WDR67	8	124096492	In_Frame_Del	DEL	CTT	TCGA-A8-A08P-01A-11W-A019-09	96568011	124096492	22267530	18	12001										
FAM91A1	0	genome.wustl.edu	37	chr8	124798772	124798772	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agaagatgctcttgtcatggGatggaggggaaagtaggagt	17	3	2	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	124798772	124798772	G	T	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.1000	p.D334Y	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	242	0	0	538	61	10.17	-	-	-	T	124798772	G	T	124798772	3	4	197	1	0	0	0	0	1	0	0	0	5697	1174	41	2	1046	2	FAM91A1	8	124798772	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09	702280	124798772	21565250	19	12002										
FREM1	0	genome.wustl.edu	37	chr9	14859403	14859403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ctccagcacattgttactcaTatggatgatgttacagtctg	8	9	2	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	9	14859403	14859403	T	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.409	p.M137V	0.908	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	495	0	0	358	47	11.6	-	-	-	C	14859403	T	C	14859403	3	2	197	1	0	0	0	0	1	0	0	0	6093	1406	49	5	6316	5	FREM1	9	14859403	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09		14859403	126354028	20	12003										
BTRC	0	genome.wustl.edu	37	chr10	103295203	103295203	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	tacagggacaggctggtagtGagtggctcatctgacaacac	13	9	2	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	10	103295203	103295203	G	C	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	1	known	silent	c.1440	p.V480	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	78	0	0	68	12	15	-	-	-	C	103295203	G	C	103295203	2	2	197	1	0	0	0	0	0	0	0	1	1578	1277	45	2		2	BTRC	10	103295203	Silent	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		103295203	32239544	21	12004										
NXF1	0	genome.wustl.edu	37	chr11	62562413	62562413	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agcagaatacttaccctgaaTtgctagcaggaacagcaatg	9	9	0	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	11	62562413	62562413	T	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.1571	p.N524S	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	73	0	0	47	13	21.67	-	-	-	C	62562413	T	C	62562413	3	2	197	1	0	0	0	0	1	0	0	0	10855	1493	52	5	304	5	NXF1	11	62562413	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09		62562413	72444103	22	12005										
SLCO1B3	0	genome.wustl.edu	37	chr12	21030801	21030801	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	taagcagctttattggttctTttacttacgtctttaaatat	5	6	2	0			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	21030801	21030801	T	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.1066	p.F356V	0.032	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	158	0	0	156	37	19.07	-	-	-	G	21030801	T	G	21030801	3	3	197	1	0	0	0	0	1	0	0	0	14813	1841	64	5	1096	5	SLCO1B3	12	21030801	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09		21030801	112821094	23	12006										
ESYT1	0	genome.wustl.edu	37	chr12	56527640	56527640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	tcttagttgtctacctggatCgggcccaggatcttcctgtg	11	11	3	0			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	56527640	56527640	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	missense	c.1456	p.R486W	0.451	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	108	0	0	127	16	11.19	-	-	-	T	56527640	C	T	56527640	3	4	197	1	0	0	0	0	1	0	0	0	5301	875	31	1	1506	1	ESYT1	12	56527640	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	35496839	56527640	77324255	24	12007										
BAZ2A	0	genome.wustl.edu	37	chr12	56998028	56998028	+	Frame_Shift_Del	DEL	T	T	-													0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gccggccttcaacaatccacTtgtttttcctgtagctggac							TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	56998028	56998028	T	-	DEL	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	frame_shift_del	c.3017	p.K1006fs	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	20	0	0	30	4	11.43	-	-	-	-	56998028	T	-	56998028	7	5	197	1	0	1	0	1	0	0	0	0	1335	1609	56	0	2756	0	BAZ2A	12	56998028	Frame_Shift_Del	DEL	T	TCGA-A8-A08P-01A-11W-A019-09	470388	56998028	76853867	25	12008										
C12orf50	0	genome.wustl.edu	37	chr12	88380150	88380150	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	taaatccattttcttttcttCacacctttaaaatgaggctt	3	9	3	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	88380150	88380150	C	T	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	silent	c.861	p.V287	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	195	0	0	104	49	32.03	-	-	-	T	88380150	C	T	88380150	2	4	197	1	0	0	0	0	0	0	0	1	1707	813	29	2		2	C12orf50	12	88380150	Silent	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	31382122	88380150	45471745	26	12009										
PPP2R3C	0	genome.wustl.edu	37	chr14	35577392	35577392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gcatgatggaaattcttccaTatgaatctgtatgaaggagt	10	5	2	3			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	14	35577392	35577392	T	C	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.455	p.Y152C	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	76	0	0	46	47	50.54	-	-	-	C	35577392	T	C	35577392	3	2	197	1	0	0	0	0	1	0	0	0	12467	1406	49	5	942	5	PPP2R3C	14	35577392	Missense_Mutation	SNP	T	TCGA-A8-A08P-01A-11W-A019-09		35577392	71772148	27	12010										
BTBD1	0	genome.wustl.edu	37	chr15	83710634	83710634	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gctccaaaaagtcgactttcTcgaatactgagtgtgtctct	8	10	2	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	83710634	83710634	T	G	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	silent	c.708	p.R236	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	130	0	0	139	34	19.65	-	-	-	G	83710634	T	G	83710634	2	3	197	1	0	0	0	0	0	0	0	1	1545	1538	54	5		5	BTBD1	15	83710634	Silent	SNP	T	TCGA-A8-A08P-01A-11W-A019-09		83710634	18820758	28	12011										
ZNF710	0	genome.wustl.edu	37	chr15	90611696	90611696	+	Frame_Shift_Del	DEL	T	T	-													0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agtgcctcgagtgtgacaagTccttccactaccgcagccag							TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	90611696	90611696	T	-	DEL	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	frame_shift_del	c.1327	p.S443fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	76	0	0	71	41	36.28	-	-	-	-	90611696	T	-	90611696	7	5	197	1	0	1	0	1	0	0	0	0	18211	1667	58	0	1329	0	ZNF710	15	90611696	Frame_Shift_Del	DEL	T	TCGA-A8-A08P-01A-11W-A019-09	6901062	90611696	11919696	29	12012	142	2								
ZNF710	0	genome.wustl.edu	37	chr15	90611700	90611701	+	Frame_Shift_Ins	INS	-	-	G													0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ctcgagtgtgacaagtccttINSccactaccgcagccagttgc							TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	90611700	90611701	-	G	INS	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	frame_shift_ins	c.1331_1332	p.F444fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	77	0	0	75	44	36.97	-	-	-	G	90611701	-	G	90611700	7	5	197	1	0	1	1	0	0	0	0	0	18211	1783	62	0	1333	0	ZNF710	15	90611700	Frame_Shift_Ins	INS	-	TCGA-A8-A08P-01A-11W-A019-09	4	90611700	11919692	30	12013	142	2								
FAM187B	0	genome.wustl.edu	37	chr19	35715792	35715792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	ggtggatgcacttgagcagcGcccccagcagggccaggacg	16	13	0	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	19	35715792	35715792	G	A	SNP	FAM187B	ENST00000324675	human	ensembl	69_37n	-1	known	missense	c.1046	p.A349V	0.000	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558	22	0	0	9	9	50	-	-	-	A	35715792	G	A	35715792	3	1	197	1	0	0	0	0	1	0	0	0	5554	1087	38	1	67	1	FAM187B	19	35715792	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		35715792	23413191	31	12014										
RAB4B	0	genome.wustl.edu	37	chr19	41286351	41286351	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	tcccgggtggtcaacgtgggTgggaagactgtgaagctaca	16	8	1	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	19	41286351	41286351	T	A	SNP	RAB4B	ENST00000357052	human	ensembl	69_37n	1	known	silent	c.159	p.G53	0.997	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4B	HGNC	ENSG00000167578	16	0	0	11	7	38.89	-	-	-	A	41286351	T	A	41286351	2	1	197	1	0	0	0	0	0	0	0	1	13030	1683	59	5		5	RAB4B	19	41286351	Silent	SNP	T	TCGA-A8-A08P-01A-11W-A019-09	5570559	41286351	17842632	32	12015										
C20orf132	0	genome.wustl.edu	37	chr20	35748218	35748218	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	gagtatatgctgggcagtctCttggccactggactccggag	14	10	1	0			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	20	35748218	35748218	C	G	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.2253	p.K751N	0.943	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	208	0	0	173	36	17.22	-	-	-	G	35748218	C	G	35748218	3	3	197	1	0	0	0	0	1	0	0	0	2106	912	32	2	903	2	C20orf132	20	35748218	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09		35748218	27277302	33	12016										
ZNF831	0	genome.wustl.edu	37	chr20	57768844	57768844	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	cctcgctggccaccccacctCaggctcctagagtgctctct	8	19	2	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	20	57768844	57768844	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	nonsense	c.2770	p.Q924*	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	22	0	0	22	7	23.33	-	-	-	T	57768844	C	T	57768844	4	4	197	1	0	0	0	0	0	1	0	0	18278	827	29	2	2772	2	ZNF831	20	57768844	Nonsense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	22020626	57768844	5256676	34	12017										
DOPEY2	0	genome.wustl.edu	37	chr21	37605126	37605126	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	cggtgattccagttttccatCttggctgaagtccctcatga	9	11	2	3			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	21	37605126	37605126	C	G	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.2375	p.S792C	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	53	0	0	182	24	11.65	-	-	-	G	37605126	C	G	37605126	3	3	197	1	0	0	0	0	1	0	0	0	4743	913	32	2	2429	2	DOPEY2	21	37605126	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09		37605126	10524769	35	12018			1	26		2	2	75	C		8.605183e-05
DOPEY2	0	genome.wustl.edu	37	chr21	37605200	37605200	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	agaacgtggccatttccactCtgctggaagtgataaaccat	9	10	1	2			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	21	37605200	37605200	C	G	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.2449	p.L817V	0.763	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	66	0	0	193	29	13.06	-	-	-	G	37605200	C	G	37605200	3	3	197	1	0	0	0	0	1	0	0	0	4743	912	32	2	2503	2	DOPEY2	21	37605200	Missense_Mutation	SNP	C	TCGA-A8-A08P-01A-11W-A019-09	74	37605200	10524695	36	12019			1	26		2	2	75	C		8.605183e-05
ACO2	0	genome.wustl.edu	37	chr22	41921257	41921257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0102657503597389	2.68333333333333	4.6	1.65128205128205	0.66992140985949	1	6	aggacagcagcgggcagcatGtggacgtgagccccaccagc	15	13	0	1			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	22	41921257	41921257	G	A	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	missense	c.1666	p.V556M	1.000	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	40	0	0	27	7	20.59	-	-	-	A	41921257	G	A	41921257	3	1	197	1	0	0	0	0	1	0	0	0	147	1377	48	4	1720	4	ACO2	22	41921257	Missense_Mutation	SNP	G	TCGA-A8-A08P-01A-11W-A019-09		41921257	9383309	37	12020										
PRAMEF10	0	genome.wustl.edu	37	chr1	12954759	12954759	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aacacaggtgcactaggcctCttctgtagtggatccaccca	9	13	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	12954759	12954759	C	G	SNP	PRAMEF10	ENST00000235347	human	ensembl	69_37n	-1	known	missense	c.524	p.R175T	0.000	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	58	0	0	39	23	37.1	-	-	-	G	12954759	C	G	12954759	3	3	198	1	0	0	0	0	1	0	0	0	12503	913	32	2	908	2	PRAMEF10	1	12954759	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		12954759	236295862	1	12021										
FAM54B	0	genome.wustl.edu	37	chr1	26153135	26153135	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcgccccctgaggcacacctGgaaacccagccctctgattg	10	17	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	26153135	26153135	G	A	SNP	FAM54B	ENST00000374300	human	ensembl	69_37n	1	known	nonsense	c.269	p.W90*	1.000	pfam_Mtfr1	pfam_Mtfr1	-	no_errors	FAM54B	HGNC	ENSG00000117640	43	0	0	20	9	31.03	-	-	-	A	26153135	G	A	26153135	4	1	198	1	0	0	0	0	0	1	0	0	5629	1357	47	4	283	4	FAM54B	1	26153135	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	13198376	26153135	223097486	2	12022										
KIAA0319L	0	genome.wustl.edu	37	chr1	35908580	35908580	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aaagggtcacagatacagcgTttggtgaacgagtcacagtg	13	7	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	35908580	35908580	T	C	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	silent	c.2706	p.K902	0.928	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	154	1	0.65	79	99	55.62	-	-	-	C	35908580	T	C	35908580	2	2	198	1	0	0	0	0	0	0	0	1	8221	1722	60	5		5	KIAA0319L	1	35908580	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	9755445	35908580	213342041	3	12023										
RNF220	0	genome.wustl.edu	37	chr1	44877905	44877905	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccatcccttgtcagcagccaCgaccctttggtgtacctgtc	8	16	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	44877905	44877905	C	T	SNP	RNF220	ENST00000355387	human	ensembl	69_37n	1	known	nonsense	c.136	p.R46*	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147	113	0	0	83	72	46.45	-	-	-	T	44877905	C	T	44877905	4	4	198	1	0	0	0	0	0	1	0	0	13569	528	19	1	138	1	RNF220	1	44877905	Nonsense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	8969325	44877905	204372716	4	12024										
ANKRD13C	0	genome.wustl.edu	37	chr1	70781223	70781223	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aacactttccctggattgctGcttaagcttcctcaaaagag	7	11	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	70781223	70781223	G	A	SNP	ANKRD13C	ENST00000370944	human	ensembl	69_37n	-1	known	nonsense	c.604	p.Q202*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454	107	0	0	67	14	17.28	-	-	-	A	70781223	G	A	70781223	4	1	198	1	0	0	0	0	0	1	0	0	643	1328	46	4	1061	4	ANKRD13C	1	70781223	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	25903318	70781223	178469398	5	12025										
ZRANB2	0	genome.wustl.edu	37	chr1	71532605	71532605	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gaagaagagcccctgtgggaCctggagctggatcttcattg	14	9	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	71532605	71532605	C	A	SNP	ZRANB2	ENST00000370920	human	ensembl	69_37n	-1	known	missense	c.783	p.R261S	1.000	pirsf_UCP037956_Znf_RanB2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485	218	0	0	130	37	22.16	-	-	-	A	71532605	C	A	71532605	3	1	198	1	0	0	0	0	1	0	0	0	18316	506	18	4	255	4	ZRANB2	1	71532605	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	751382	71532605	177718016	6	12026										
ELTD1	0	genome.wustl.edu	37	chr1	79403558	79403558	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctgggatatccttaaagtagCttgttcaacagtgtgcatga	10	7	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	79403558	79403558	C	G	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.694	p.A232P	0.003	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	219	0	0	110	34	23.45	-	-	-	G	79403558	C	G	79403558	3	3	198	1	0	0	0	0	1	0	0	0	5121	797	28	4	1418	4	ELTD1	1	79403558	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	7870953	79403558	169847063	7	12027										
TTLL7	0	genome.wustl.edu	37	chr1	84356005	84356005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aagatgacttagagcttaccCtgaatcacagaaacagttcc	7	10	1	5			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	84356005	84356005	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.2368	p.G790R	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	116	0	0	63	18	22.22	-	-	-	T	84356005	C	T	84356005	3	4	198	1	0	0	0	0	1	0	0	0	16829	695	24	4	307	4	TTLL7	1	84356005	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	4952447	84356005	164894616	8	12028										
PRPF38B	0	genome.wustl.edu	37	chr1	109238761	109238761	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctcgaaagcaagtgatgggtCttataacacacacagactct	8	10	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	109238761	109238761	C	G	SNP	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	missense	c.442	p.L148V	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	234	0	0	179	23	11.39	-	-	-	G	109238761	C	G	109238761	3	3	198	1	0	0	0	0	1	0	0	0	12649	913	32	2	452	2	PRPF38B	1	109238761	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	24882756	109238761	140011860	9	12029										
FNDC7	0	genome.wustl.edu	37	chr1	109268596	109268596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ataacaaggcagggcaaagtCctttgggtgacatattcaat	10	7	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	109268596	109268596	C	T	SNP	FNDC7	ENST00000271311	human	ensembl	69_37n	1	known	missense	c.1084	p.P362S	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107	129	0	0	80	22	21.57	-	-	-	T	109268596	C	T	109268596	3	4	198	1	0	0	0	0	1	0	0	0	6019	855	30	2	1103	2	FNDC7	1	109268596	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	29835	109268596	139982025	10	12030										
RSBN1	0	genome.wustl.edu	37	chr1	114340575	114340575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tcttcctcgcatgtcttctcGgtgtttctttttctttttct	5	11	6	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	114340575	114340575	G	C	SNP	RSBN1	ENST00000261441	human	ensembl	69_37n	-1	known	missense	c.787	p.R263G	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019	332	0	0	288	60	17.24	-	-	-	C	114340575	G	C	114340575	3	2	198	1	0	0	0	0	1	0	0	0	13782	1124	39	3	1645	3	RSBN1	1	114340575	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	5071979	114340575	134910046	11	12031										
TTF2	0	genome.wustl.edu	37	chr1	117618186	117618186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagtgtgcctgctcctggagGaccagcggctcaggctgcac	14	14	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	117618186	117618186	G	C	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	missense	c.980	p.G327A	0.010	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	125	0	0	79	32	28.83	-	-	-	C	117618186	G	C	117618186	3	2	198	1	0	0	0	0	1	0	0	0	16816	1174	41	2	998	2	TTF2	1	117618186	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	3277611	117618186	131632435	12	12032										
PDE4DIP	0	genome.wustl.edu	37	chr1	144923716	144923716	+	Frame_Shift_Del	DEL	T	T	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggtggcctctgtttgctggaTtttttcctggagttctgcca							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	144923716	144923716	T	-	DEL	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	frame_shift_del	c.742	p.I248fs	0.989	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	540	0	0	427	68	13.65	-	-	-	-	144923716	T	-	144923716	7	5	198	1	0	1	0	1	0	0	0	0	11716	1493	52	0	6464	0	PDE4DIP	1	144923716	Frame_Shift_Del	DEL	T	TCGA-A8-A08R-01A-11W-A050-09	27305530	144923716	104326905	13	12033										
ADCY10	0	genome.wustl.edu	37	chr1	167791335	167791335	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gattctgttgttttcgtattGgtgtatgaattccaaacatt	8	5	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	167791335	167791335	G	A	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	nonsense	c.4213	p.Q1405*	0.001	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	287	0	0	213	85	28.52	-	-	-	A	167791335	G	A	167791335	4	1	198	1	0	0	0	0	0	1	0	0	293	1357	47	4	635	4	ADCY10	1	167791335	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	22867619	167791335	81459286	14	12034										
F5	0	genome.wustl.edu	37	chr1	169510241	169510241	+	Missense_Mutation	SNP	G	G	T													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtctagagaaagggttgtatGgctggggtctggagaaaggg							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	169510241	169510241	G	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4102	p.H1368N	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	798	1	0.12	916	207	18.38	-	-	-	T	169510241	G	T	169510241	3	4	198	1	0	0	0	0	1	0	0	0	5385	1348	47	4	2639	4	F5	1	169510241	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1718906	169510241	79740380	15	12035	143	2								
F5	0	genome.wustl.edu	37	chr1	169510242	169510242	+	Missense_Mutation	SNP	G	G	T													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tctagagaaagggttgtatgGctggggtctggagaaagggg							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	169510242	169510242	G	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4101	p.S1367R	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	798	2	0.25	921	215	18.93	-	-	-	T	169510242	G	T	169510242	3	4	198	1	0	0	0	0	1	0	0	0	5385	1194	42	4	2640	4	F5	1	169510242	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1	169510242	79740379	16	12036	143	2								
F5	0	genome.wustl.edu	37	chr1	169510453	169510453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgagttctggagagaggtttGtctggctgaagtctagagaa	15	4	3	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	169510453	169510453	G	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3890	p.T1297K	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	987	1	0.1	1101	356	24.43	-	-	-	T	169510453	G	T	169510453	3	4	198	1	0	0	0	0	1	0	0	0	5385	1377	48	4	2851	4	F5	1	169510453	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	211	169510453	79740168	17	12037										
CACNA1E	0	genome.wustl.edu	37	chr1	181680207	181680207	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcctggatagacaaagcaggTaggcctggggggctgcagga	18	8	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	181680207	181680207	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	splice_site	c.1171+2	e8+2	1.000	-	-	-	no_errors	CACNA1E	HGNC	ENSG00000198216	119	1	0.79	102	16	12.9	-	-	-	C	181680207	T	C	181680207	5	2	198	1	0	0	0	0	0	0	1	0	2567	1652	57	5	1203	5	CACNA1E	1	181680207	Splice_Site	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	12169754	181680207	67570414	18	12038										
CYB5R1	0	genome.wustl.edu	37	chr1	202935152	202935152	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgcagagagctacataagggTtgtctgtgatgtgctgcatc	13	7	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	202935152	202935152	T	C	SNP	CYB5R1	ENST00000473599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	178	0	0	175	31	14.76	-	-	-	C	202935152	T	C	202935152	1	2	198	0	1	0	0	0	0	0	0	0	4157	1740	60	5		5	CYB5R1	1	202935152	RNA	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	21254945	202935152	46315469	19	12039										
TP53BP2	0	genome.wustl.edu	37	chr1	223989890	223989890	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	catcggcccctctgaagcctGaatgaccaaggaaccatccg	9	15	1	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	223989890	223989890	G	C	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.1153	p.Q385E	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	84	0	0	99	31	23.85	-	-	-	C	223989890	G	C	223989890	3	2	198	1	0	0	0	0	1	0	0	0	16480	1299	45	2	2291	2	TP53BP2	1	223989890	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	21054738	223989890	25260731	20	12040										
WDR64	0	genome.wustl.edu	37	chr1	241912926	241912926	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggaaagactggaaggaggacGagcactgcctacgacgcctc	14	11	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	241912926	241912926	G	T	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	nonsense	c.1642	p.E548*	0.851	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	543	0	0	343	320	48.19	-	-	-	T	241912926	G	T	241912926	4	4	198	1	0	0	0	0	0	1	0	0	17412	1059	37	3	1692	3	WDR64	1	241912926	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	17923036	241912926	7337695	21	12041										
WDR64	0	genome.wustl.edu	37	chr1	241953984	241953984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atttcaagtttttcaagtctCtttcttctcctaaggtagct	5	9	5	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	1	241953984	241953984	C	G	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	missense	c.2953	p.L985V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	421	0	0	460	66	12.48	-	-	-	G	241953984	C	G	241953984	3	3	198	1	0	0	0	0	1	0	0	0	17412	913	32	2	3047	2	WDR64	1	241953984	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	41058	241953984	7296637	22	12042										
APOB	0	genome.wustl.edu	37	chr2	21232270	21232270	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgtaaccaattgatgattaaGgttattttggtgtcctgtag	10	4	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	21232270	21232270	G	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.7470	p.T2490	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	306	0	0	237	125	34.44	-	-	-	T	21232270	G	T	21232270	2	4	198	1	0	0	0	0	0	0	0	1	787	987	35	4		4	APOB	2	21232270	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		21232270	221967103	23	12043										
C2orf16	0	genome.wustl.edu	37	chr2	27802013	27802013	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	acattccaggcagaatcaggGgttcagaaaggtctcatcaa	10	9	4	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	27802013	27802013	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	silent	c.2574	p.G858	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	53	0	0	62	21	25.3	-	-	-	C	27802013	G	C	27802013	2	2	198	1	0	0	0	0	0	0	0	1	2177	1219	43	4		4	C2orf16	2	27802013	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	6569743	27802013	215397360	24	12044										
LTBP1	0	genome.wustl.edu	37	chr2	33482526	33482526	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccagccaaggaagagccagtGgaggccctgaccttctcccg	12	15	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	33482526	33482526	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	silent	c.2343	p.V781	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	42	0	0	32	14	30.43	-	-	-	A	33482526	G	A	33482526	2	1	198	1	0	0	0	0	0	0	0	1	9139	1335	47	4		4	LTBP1	2	33482526	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	5680513	33482526	209716847	25	12045										
LRPPRC	0	genome.wustl.edu	37	chr2	44190742	44190742	+	Frame_Shift_Del	DEL	T	T	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctcacctgcaaaatggctcgTgctgagtttacactatcaaa							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	44190742	44190742	T	-	DEL	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	frame_shift_del	c.1473	p.R492fs	0.002	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	277	0	0	231	30	11.41	-	-	-	-	44190742	T	-	44190742	7	5	198	1	0	1	0	1	0	0	0	0	9031	1683	59	0	2819	0	LRPPRC	2	44190742	Frame_Shift_Del	DEL	T	TCGA-A8-A08R-01A-11W-A050-09	10708216	44190742	199008631	26	12046										
CCDC104	0	genome.wustl.edu	37	chr2	55763007	55763007	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tatgtggaactacataatttTaagtacaatgtaaatattga	6	3	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	55763007	55763007	T	C	SNP	CCDC104	ENST00000403007	human	ensembl	69_37n	1	putative	silent	c.645	p.F215	0.001	NULL	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001	248	0	0	266	62	18.9	-	-	-	C	55763007	T	C	55763007	2	2	198	1	0	0	0	0	0	0	0	1	2764	1769	61	5		5	CCDC104	2	55763007	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	11572265	55763007	187436366	27	12047										
TMEM87B	0	genome.wustl.edu	37	chr2	112847241	112847241	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atgcaccgggtgatcggactGgggcttctatacttaatctt	11	9	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	112847241	112847241	G	C	SNP	TMEM87B	ENST00000283206	human	ensembl	69_37n	1	known	silent	c.978	p.L326	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214	275	0	0	229	53	18.79	-	-	-	C	112847241	G	C	112847241	2	2	198	1	0	0	0	0	0	0	0	1	16306	1335	47	4		4	TMEM87B	2	112847241	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	57084234	112847241	130352132	28	12048										
SAP130	0	genome.wustl.edu	37	chr2	128750777	128750777	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atacctggatactgtcggatAgtggacacggaactggtgat	13	7	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	128750777	128750777	A	T	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	silent	c.1539	p.T513	0.995	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	144	0	0	121	27	18.12	-	-	-	T	128750777	A	T	128750777	2	4	198	1	0	0	0	0	0	0	0	1	13917	407	15	5		5	SAP130	2	128750777	Silent	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	15903536	128750777	114448596	29	12049										
GALNT13	0	genome.wustl.edu	37	chr2	155115571	155115571	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtggcctattttctattgacAgaaactactttgaagagata	8	6	1	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	155115571	155115571	A	T	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	nonsense	c.895	p.R299*	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	252	0	0	146	35	19.23	-	-	-	T	155115571	A	T	155115571	4	4	198	1	0	0	0	0	0	1	0	0	6261	180	7	5	917	5	GALNT13	2	155115571	Nonsense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	26364794	155115571	88083802	30	12050										
FIGN	0	genome.wustl.edu	37	chr2	164466580	164466580	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ttgagaggagagaagcatgtCaatgtcactaacaaaaatca	9	6	3	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	164466580	164466580	C	G	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.1762	p.D588H	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	145	0	0	88	22	20	-	-	-	G	164466580	C	G	164466580	3	3	198	1	0	0	0	0	1	0	0	0	5937	826	29	2	521	2	FIGN	2	164466580	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	9351009	164466580	78732793	31	12051										
TTN	0	genome.wustl.edu	37	chr2	179501201	179501201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	caggtgtattcaccagcatcGgaaagttgaacatcaatgat	9	8	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	179501201	179501201	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.33549	p.S11183	0.174	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	73	0	0	49	10	16.95	-	-	-	A	179501201	G	A	179501201	2	1	198	1	0	0	0	0	0	0	0	1	16832	1103	39	1		1	TTN	2	179501201	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	15034621	179501201	63698172	32	12052										
DNAH7	0	genome.wustl.edu	37	chr2	196753032	196753032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aacagggaccattctgtcaaAtaagcccattatgaattcct	6	10	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	196753032	196753032	A	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.5356	p.F1786L	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	91	0	0	55	16	22.54	-	-	-	G	196753032	A	G	196753032	3	3	198	1	0	0	0	0	1	0	0	0	4641	101	4	5	6850	5	DNAH7	2	196753032	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	17251831	196753032	46446341	33	12053										
NDUFB3	0	genome.wustl.edu	37	chr2	201950321	201950321	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	acctggagtccctgaataaaGataagaagcatcactgaaga	9	8	1	5			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	2	201950321	201950321	G	C	SNP	NDUFB3	ENST00000237889	human	ensembl	69_37n	1	known	missense	c.280	p.D94H	0.605	pfam_NADH_UbQ_OxRdtase_B12_su	pfam_NADH_UbQ_OxRdtase_B12_su	-	no_errors	NDUFB3	HGNC	ENSG00000119013	222	0	0	133	50	27.17	-	-	-	C	201950321	G	C	201950321	3	2	198	1	0	0	0	0	1	0	0	0	10354	942	33	2	286	2	NDUFB3	2	201950321	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	5197289	201950321	41249052	34	12054										
TADA3	0	genome.wustl.edu	37	chr3	9822135	9822135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgggagtccgcttcttctgcCgggcagccatgatcttgcga	13	12	3	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	9822135	9822135	C	T	SNP	TADA3	ENST00000301964	human	ensembl	69_37n	-1	known	missense	c.1205	p.R402Q	1.000	pfam_Histone_AcTrfase_su3	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148	115	0	0	46	66	57.39	-	-	-	T	9822135	C	T	9822135	3	4	198	1	0	0	0	0	1	0	0	0	15604	652	23	1	97	1	TADA3	3	9822135	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		9822135	188200295	35	12055										
IQCF2	0	genome.wustl.edu	37	chr3	51897216	51897216	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagtgatcaagctccagtctTtggtccgtatgtggcgtgtc	12	10	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	51897216	51897216	T	C	SNP	IQCF2	ENST00000333127	human	ensembl	69_37n	1	known	silent	c.325	p.L109	0.016	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF2	HGNC	ENSG00000184345	215	0	0	140	45	24.32	-	-	-	C	51897216	T	C	51897216	2	2	198	1	0	0	0	0	0	0	0	1	7862	1838	64	5		5	IQCF2	3	51897216	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	42075081	51897216	146125214	36	12056										
STAB1	0	genome.wustl.edu	37	chr3	52548829	52548831	+	In_Frame_Del	DEL	ACG	ACG	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aagtcgctgcctgcatagccAcgctgaggccctgcgggtga							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	ACG	ACG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	52548829	52548831	ACG	-	DEL	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	in_frame_del	c.3791_3793	p.HA1264in_frame_delP	0.983:0.001:0.003	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	13	0	0	9	5	35.71	-	-	-	-	52548831	ACG	-	52548829	7	5	198	1	0	1	0	1	0	0	0	0	15328	159	6	0	3929	0	STAB1	3	52548829	In_Frame_Del	DEL	ACG	TCGA-A8-A08R-01A-11W-A050-09	651613	52548829	145473601	37	12057										
NEK4	0	genome.wustl.edu	37	chr3	52786050	52786050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gaccacatgggaatcaggttTtcaggctgggcactggattt	13	8	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	52786050	52786050	T	C	SNP	NEK4	ENST00000487068	human	ensembl	69_37n	-1	known	missense	c.37	p.K13E	0.010	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NEK4	HGNC	ENSG00000114904	415	0	0	165	155	48.29	-	-	-	C	52786050	T	C	52786050	3	2	198	1	0	0	0	0	1	0	0	0	10398	1838	64	5	1299	5	NEK4	3	52786050	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	237221	52786050	145236380	38	12058										
CNTN3	0	genome.wustl.edu	37	chr3	74313557	74313557	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aaaaaggagttaatatcaccAcaggacatatacaattaaga	6	6	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	74313557	74313557	A	G	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.3082	p.W1028R	0.994	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	107	0	0	60	7	10.29	-	-	-	G	74313557	A	G	74313557	3	3	198	1	0	0	0	0	1	0	0	0	3672	159	6	5	8	5	CNTN3	3	74313557	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	21527507	74313557	123708873	39	12059										
ROPN1	0	genome.wustl.edu	37	chr3	123688911	123688911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ttcctgttccatgtagtttaGcatcctgctgacatgtgatg	9	9	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	123688911	123688911	G	A	SNP	ROPN1	ENST00000184183	human	ensembl	69_37n	-1	known	silent	c.550	p.L184	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1	HGNC	ENSG00000065371	223	1	0.45	72	53	42.4	-	-	-	A	123688911	G	A	123688911	2	1	198	1	0	0	0	0	0	0	0	1	13609	962	34	4		4	ROPN1	3	123688911	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	49375354	123688911	74333519	40	12060										
CP	0	genome.wustl.edu	37	chr3	148903026	148903026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atcagagtctggagaattacTtctgctcttgtaaatgatgc	9	7	4	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	148903026	148903026	T	G	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.2285	p.N762T	0.997	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	159	0	0	177	55	23.71	-	-	-	G	148903026	T	G	148903026	3	3	198	1	0	0	0	0	1	0	0	0	3817	1623	56	5	944	5	CP	3	148903026	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	25214115	148903026	49119404	41	12061										
SI	0	genome.wustl.edu	37	chr3	164773011	164773011	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tccatcatattgcacttcttGatggaaaatactgcattcat	5	9	3	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	164773011	164773011	G	C	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.1483	p.Q495E	0.300	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	152	0	0	56	79	58.09	-	-	-	C	164773011	G	C	164773011	3	2	198	1	0	0	0	0	1	0	0	0	14386	1299	45	2	4144	2	SI	3	164773011	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	15869985	164773011	33249419	42	12062										
PIK3CA	0	genome.wustl.edu	37	chr3	178937452	178937452	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagatcctatggttcgaggtTttgctgttcggtgcttggaa	13	7	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	178937452	178937452	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1840	p.F614I	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	160	0	0	243	33	11.96	-	-	-	A	178937452	T	A	178937452	3	1	198	1	0	0	0	0	1	0	0	0	11987	1841	64	5	1882	5	PIK3CA	3	178937452	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	14164441	178937452	19084978	43	12063										
FETUB	0	genome.wustl.edu	37	chr3	186362642	186362642	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggctgccaccgagtctcttgCgaaatacaacaatgagaaca	9	11	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	186362642	186362642	C	G	SNP	FETUB	ENST00000265029	human	ensembl	69_37n	1	known	missense	c.527	p.A176G	0.961	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512	97	0	0	59	99	62.66	-	-	-	G	186362642	C	G	186362642	3	3	198	1	0	0	0	0	1	0	0	0	5867	768	27	3	541	3	FETUB	3	186362642	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	7425190	186362642	11659788	44	12064										
RFC4	0	genome.wustl.edu	37	chr3	186508118	186508118	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tagtaagctgactttaccttGaccacagcttctagtttgtc	7	10	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	186508118	186508118	G	C	SNP	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	silent	c.879	p.V293	0.837	pfam_Rep_factorC_C_dom,superfamily_DNA_pol3_clamp-load_cplx_C	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	361	0	0	454	134	22.79	-	-	-	C	186508118	G	C	186508118	2	2	198	1	0	0	0	0	0	0	0	1	13330	1277	45	2		2	RFC4	3	186508118	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	145476	186508118	11514312	45	12065										
ATP13A5	0	genome.wustl.edu	37	chr3	193044787	193044787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ttcacataagaggcctaccaGttgtcagcagtagggacagt	11	9	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	193044787	193044787	G	C	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	missense	c.1521	p.N507K	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	153	0	0	79	94	54.34	-	-	-	C	193044787	G	C	193044787	3	2	198	1	0	0	0	0	1	0	0	0	1131	1020	36	4	2205	4	ATP13A5	3	193044787	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	6536669	193044787	4977643	46	12066										
LRRC33	0	genome.wustl.edu	37	chr3	196386694	196386694	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agcctcccgccccacgcccgGatgctcaccctggatgccaa	9	20	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	196386694	196386694	G	T	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	silent	c.180	p.R60	0.004	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	54	0	0	67	10	12.99	-	-	-	T	196386694	G	T	196386694	2	4	198	1	0	0	0	0	0	0	0	1	9054	1161	41	2		2	LRRC33	3	196386694	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	3341907	196386694	1635736	47	12067										
KIAA0226	0	genome.wustl.edu	37	chr3	197421305	197421305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tggtgcggatttgctggcgcCgaaggcggatcttctgcttc	15	10	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	3	197421305	197421305	C	T	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.1625	p.R542Q	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	246	0	0	229	74	24.42	-	-	-	T	197421305	C	T	197421305	3	4	198	1	0	0	0	0	1	0	0	0	8214	652	23	1	1337	1	KIAA0226	3	197421305	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	1034611	197421305	601125	48	12068										
RBM47	0	genome.wustl.edu	37	chr4	40427971	40427971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gacctgaatggcagcagcagGgaaggcctgaggtatgtagc	16	8	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	40427971	40427971	G	T	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	missense	c.1732	p.P578T	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	113	0	0	46	52	53.06	-	-	-	T	40427971	G	T	40427971	3	4	198	1	0	0	0	0	1	0	0	0	13224	1232	43	4	53	4	RBM47	4	40427971	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		40427971	150726305	49	12069										
TEC	0	genome.wustl.edu	37	chr4	48230590	48230590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtcttctttttctgctgtgaCcttttaataagaatctcctc	5	10	4	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	48230590	48230590	C	T	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	silent	c.42	p.R14	0.966	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	TEC	HGNC	ENSG00000135605	443	0	0	352	78	18.14	-	-	-	T	48230590	C	T	48230590	2	4	198	1	0	0	0	0	0	0	0	1	15837	506	18	4		4	TEC	4	48230590	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	7802619	48230590	142923686	50	12070										
PDCL2	0	genome.wustl.edu	37	chr4	56435917	56435917	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agatgaattataacccacacAtcttcttctgcatttgtgac	5	10	3	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	56435917	56435917	A	C	SNP	PDCL2	ENST00000295645	human	ensembl	69_37n	-1	known	missense	c.330	p.D110E	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	-	no_errors	PDCL2	HGNC	ENSG00000163440	190	0	0	214	51	19.17	-	-	-	C	56435917	A	C	56435917	3	2	198	1	0	0	0	0	1	0	0	0	11700	214	8	5	407	5	PDCL2	4	56435917	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	8205327	56435917	134718359	51	12071										
NPFFR2	0	genome.wustl.edu	37	chr4	73013148	73013148	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctgcccctgtggactctaatGatgctctcagactacgctga	9	13	2	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	73013148	73013148	G	T	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.1188	p.M396I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	120	0	0	47	30	38.96	-	-	-	T	73013148	G	T	73013148	3	4	198	1	0	0	0	0	1	0	0	0	10650	1290	45	2	1208	2	NPFFR2	4	73013148	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	16577231	73013148	118141128	52	12072										
SHROOM3	0	genome.wustl.edu	37	chr4	77675773	77675773	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	acagggcgacagcctctcccGccctacacccctgccatgat	8	19	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	77675773	77675773	G	T	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	silent	c.4137	p.P1379	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	97	0	0	65	24	26.09	-	-	-	T	77675773	G	T	77675773	2	4	198	1	0	0	0	0	0	0	0	1	14384	1074	38	3		3	SHROOM3	4	77675773	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	4662625	77675773	113478503	53	12073										
PDLIM5	0	genome.wustl.edu	37	chr4	95539203	95539203	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcttcctcggtagcttccacAcggagcatgcccgagagcct	11	15	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	95539203	95539203	A	T	SNP	PDLIM5	ENST00000506632	human	ensembl	69_37n	1	known	missense	c.197	p.H66L	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PDLIM5	HGNC	ENSG00000163110	166	0	0	87	13	12.87	-	-	-	T	95539203	A	T	95539203	3	4	198	1	0	0	0	0	1	0	0	0	11756	146	6	5	1155	5	PDLIM5	4	95539203	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	17863430	95539203	95615073	54	12074										
ANKRD50	0	genome.wustl.edu	37	chr4	125593162	125593162	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgctgcattacataaatactTctgagtacagtgtttcacat	6	8	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	125593162	125593162	T	A	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	nonsense	c.1270	p.K424*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	122	0	0	37	36	49.32	-	-	-	A	125593162	T	A	125593162	4	1	198	1	0	0	0	0	0	1	0	0	676	1792	62	5	3023	5	ANKRD50	4	125593162	Nonsense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	30053959	125593162	65561114	55	12075										
LRBA	0	genome.wustl.edu	37	chr4	151829594	151829594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aatgcattgcactttggatgGaatgtgttaaaactgccttt	9	6	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	151829594	151829594	G	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.1385	p.S462C	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	406	0	0	181	94	34.18	-	-	-	C	151829594	G	C	151829594	3	2	198	1	0	0	0	0	1	0	0	0	8997	1174	41	2	7398	2	LRBA	4	151829594	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	26236432	151829594	39324682	56	12076										
SLC25A4	0	genome.wustl.edu	37	chr4	186066044	186066044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtaacctggccaacgtgatcCgttacttccccacccaagct	7	16	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	4	186066044	186066044	C	T	SNP	SLC25A4	ENST00000281456	human	ensembl	69_37n	1	known	missense	c.238	p.R80C	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729	77	0	0	35	7	16.67	-	-	-	T	186066044	C	T	186066044	3	4	198	1	0	0	0	0	1	0	0	0	14593	652	23	1	244	1	SLC25A4	4	186066044	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	34236450	186066044	5088232	57	12077										
PJA2	0	genome.wustl.edu	37	chr5	108704338	108704338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tagctcaggttcattctcatCttttcctggcagagtctccc	7	13	5	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	108704338	108704338	C	G	SNP	PJA2	ENST00000361189	human	ensembl	69_37n	-1	known	missense	c.1393	p.D465H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	197	0	0	86	11	11.34	-	-	-	G	108704338	C	G	108704338	3	3	198	1	0	0	0	0	1	0	0	0	12036	913	32	2	757	2	PJA2	5	108704338	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		108704338	72210922	58	12078										
WDR36	0	genome.wustl.edu	37	chr5	110445999	110445999	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gaggaagttttggcaaggatCaaggtagagaatttttttcc	12	4	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	110445999	110445999	C	G	SNP	WDR36	ENST00000506538	human	ensembl	69_37n	1	known	missense	c.1606	p.Q536E	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	293	0	0	103	52	33.55	-	-	-	G	110445999	C	G	110445999	3	3	198	1	0	0	0	0	1	0	0	0	17387	827	29	2	1656	2	WDR36	5	110445999	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	1741661	110445999	70469261	59	12079										
SLC23A1	0	genome.wustl.edu	37	chr5	138715509	138715509	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagagcagccacacggtcatGatggccagcatgatctgaag	12	11	2	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	138715509	138715509	G	C	SNP	SLC23A1	ENST00000353963	human	ensembl	69_37n	-1	known	missense	c.795	p.I265M	0.999	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482	66	0	0	58	9	13.43	-	-	-	C	138715509	G	C	138715509	3	2	198	1	0	0	0	0	1	0	0	0	14551	1280	45	2	1041	2	SLC23A1	5	138715509	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	28269510	138715509	42199751	60	12080										
PCDHGA7	0	genome.wustl.edu	37	chr5	140763532	140763532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgacgtctttaagtagctcaAtccctgaagacacacctctt	6	12	3	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	140763532	140763532	A	G	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	missense	c.1066	p.I356V	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	43	0	0	18	6	25	-	-	-	G	140763532	A	G	140763532	3	3	198	1	0	0	0	0	1	0	0	0	11632	101	4	5	1068	5	PCDHGA7	5	140763532	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	2048023	140763532	40151728	61	12081										
PCDHGB7	0	genome.wustl.edu	37	chr5	140797618	140797618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtcctggatgtgtcggctcgCgagctgcgagtgagcgcgga	18	10	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	140797618	140797618	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	silent	c.192	p.R64	0.871	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	111	0	0	45	36	43.9	-	-	-	T	140797618	C	T	140797618	2	4	198	1	0	0	0	0	0	0	0	1	11641	755	27	1		1	PCDHGB7	5	140797618	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	34086	140797618	40117642	62	12082										
CPEB4	0	genome.wustl.edu	37	chr5	173317753	173317753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cctttgaagaaaaattttgcAagcaatcatattcagctcca	5	9	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	5	173317753	173317753	A	G	SNP	CPEB4	ENST00000519152	human	ensembl	69_37n	1	novel	missense	c.74	p.Q25R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	CPEB4	HGNC	ENSG00000113742	61	0	0	28	10	26.32	-	-	-	G	173317753	A	G	173317753	3	3	198	1	0	0	0	0	1	0	0	0	3833	117	5	5	1019	5	CPEB4	5	173317753	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	32520135	173317753	7597507	63	12083										
JARID2	0	genome.wustl.edu	37	chr6	15496556	15496556	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	caaacccaatcaccacaagcCcagttccgctgtcaaccaca	4	18	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	15496556	15496556	C	G	SNP	JARID2	ENST00000341776	human	ensembl	69_37n	1	known	missense	c.1100	p.P367R	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	269	0	0	164	28	14.51	-	-	-	G	15496556	C	G	15496556	3	3	198	1	0	0	0	0	1	0	0	0	7999	623	22	4	1126	4	JARID2	6	15496556	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		15496556	155618511	64	12084										
BTN1A1	0	genome.wustl.edu	37	chr6	26509208	26509208	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tccggcccttcttttgcctaTggtctagcggtaaaaagccc	9	13	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	26509208	26509208	T	G	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	missense	c.1387	p.W463G	0.696	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	98	0	0	92	19	17.12	-	-	-	G	26509208	T	G	26509208	3	3	198	1	0	0	0	0	1	0	0	0	1568	1464	51	5	1413	5	BTN1A1	6	26509208	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	11012652	26509208	144605859	65	12085										
OR5V1	0	genome.wustl.edu	37	chr6	29323667	29323667	+	Frame_Shift_Del	DEL	A	A	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cctacaaagaaaacaaatgcAaaaagttgaaccacacaccc							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	29323667	29323667	A	-	DEL	OR5V1	ENST00000377151	human	ensembl	69_37n	-1	known	frame_shift_del	c.306	p.F102fs	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729	197	0	0	180	27	12.98	-	-	-	-	29323667	A	-	29323667	7	5	198	1	0	1	0	1	0	0	0	0	11257	127	5	0	662	0	OR5V1	6	29323667	Frame_Shift_Del	DEL	A	TCGA-A8-A08R-01A-11W-A050-09	2814459	29323667	141791400	66	12086										
DNAH8	0	genome.wustl.edu	37	chr6	38825426	38825426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ttctaaatactctcattagtCagacaacacatgatctaagc	4	10	4	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	38825426	38825426	C	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.5215	p.Q1739K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	288	0	0	351	59	14.36	-	-	-	A	38825426	C	A	38825426	3	1	198	1	0	0	0	0	1	0	0	0	4642	827	29	2	5365	2	DNAH8	6	38825426	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	9501759	38825426	132289641	67	12087										
XPO5	0	genome.wustl.edu	37	chr6	43491629	43491629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gggttcaaagatggtggccaGgccacccccatcattgtcca	11	13	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	43491629	43491629	G	T	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.3592	p.L1198M	0.896	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	135	0	0	144	63	30.29	-	-	-	T	43491629	G	T	43491629	3	4	198	1	0	0	0	0	1	0	0	0	17544	991	35	4	26	4	XPO5	6	43491629	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	4666203	43491629	127623438	68	12088										
IL17A	0	genome.wustl.edu	37	chr6	52053964	52053964	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	taccacatgaactctgtcccCatccagcaagagatcctggt	7	14	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	52053964	52053964	C	A	SNP	IL17A	ENST00000340057	human	ensembl	69_37n	1	known	silent	c.342	p.P114	1.000	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17A	HGNC	ENSG00000112115	201	0	0	229	49	17.63	-	-	-	A	52053964	C	A	52053964	2	1	198	1	0	0	0	0	0	0	0	1	7688	581	21	4		4	IL17A	6	52053964	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	8562335	52053964	119061103	69	12089										
BEND6	0	genome.wustl.edu	37	chr6	56857343	56857343	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cgacttcgacagtctttggtCatgcttcaaggtaaactttg	9	9	3	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	56857343	56857343	C	A	SNP	BEND6	ENST00000370746	human	ensembl	69_37n	1	known	silent	c.288	p.V96	0.998	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917	339	0	0	206	51	19.84	-	-	-	A	56857343	C	A	56857343	2	1	198	1	0	0	0	0	0	0	0	1	1406	813	29	2		2	BEND6	6	56857343	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	4803379	56857343	114257724	70	12090										
ANKRD6	0	genome.wustl.edu	37	chr6	90340379	90340379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atcagcaggctgggccctgcGtcaacagaggcactcaaact	11	13	3	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	90340379	90340379	G	A	SNP	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	missense	c.1840	p.V614I	0.023	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	75	0	0	34	29	46.03	-	-	-	A	90340379	G	A	90340379	3	1	198	1	0	0	0	0	1	0	0	0	684	1145	40	1	1883	1	ANKRD6	6	90340379	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	33483036	90340379	80774688	71	12091										
MAP3K7	0	genome.wustl.edu	37	chr6	91257871	91257871	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tcacttttgttactcgtattTgtagaagcaatgtccatgaa	7	7	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	91257871	91257871	T	G	SNP	MAP3K7	ENST00000369329	human	ensembl	69_37n	-1	known	silent	c.975	p.T325	1.000	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341	244	0	0	178	55	23.61	-	-	-	G	91257871	T	G	91257871	2	3	198	1	0	0	0	0	0	0	0	1	9326	1799	63	5		5	MAP3K7	6	91257871	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	917492	91257871	79857196	72	12092										
TUBE1	0	genome.wustl.edu	37	chr6	112397239	112397239	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagaacttgaagtaaccagaCtctttggcttcacagttgta	8	9	2	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	112397239	112397239	C	A	SNP	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	missense	c.713	p.S238I	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	182	0	0	121	46	27.54	-	-	-	A	112397239	C	A	112397239	3	1	198	1	0	0	0	0	1	0	0	0	16860	565	20	4	734	4	TUBE1	6	112397239	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	21139368	112397239	58717828	73	12093										
SYNE1	0	genome.wustl.edu	37	chr6	152576053	152576053	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctgaagtctttctttcatctGatgacatcgttgattcacta	6	9	5	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	6	152576053	152576053	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.19432	p.Q6478*	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	144	0	0	85	22	20.56	-	-	-	A	152576053	G	A	152576053	4	1	198	1	0	0	0	0	0	1	0	0	15537	1299	45	2	7206	2	SYNE1	6	152576053	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	40178814	152576053	18539014	74	12094										
TRIL	0	genome.wustl.edu	37	chr7	28996897	28996897	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcccctgagcgagagcaggcCgagacgtggcaggtgctgga	18	11	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	7	28996897	28996897	C	G	SNP	TRIL	ENST00000322982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734	21	0	0	7	5	41.67	-	-	-	G	28996897	C	G	28996897	1	3	198	0	1	0	0	0	0	0	0	0	16581	652	23	3		3	TRIL	7	28996897	RNA	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		28996897	130141766	75	12095										
FKBP6	0	genome.wustl.edu	37	chr7	72756874	72756874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgttcgcgccctgtggcgatGgttctacagcaggagaaagt	14	9	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	7	72756874	72756874	G	T	SNP	FKBP6	ENST00000252037	human	ensembl	69_37n	1	known	missense	c.961	p.G321C	0.000	NULL	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP6	HGNC	ENSG00000077800	134	0	0	82	24	22.64	-	-	-	T	72756874	G	T	72756874	3	4	198	1	0	0	0	0	1	0	0	0	5958	1348	47	4	1037	4	FKBP6	7	72756874	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	43759977	72756874	86381789	76	12096										
CD36	0	genome.wustl.edu	37	chr7	80303418	80303418	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggtgtggtgatgtttgttgcTtttatgatttcatattgtgc	12	3	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	7	80303418	80303418	T	G	SNP	CD36	ENST00000488048	human	ensembl	69_37n	1	putative	missense	c.154	p.F52V	0.964	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD36	HGNC	ENSG00000135218	364	0	0	262	154	37.02	-	-	-	G	80303418	T	G	80303418	3	3	198	1	0	0	0	0	1	0	0	0	3036	1596	56	5	1420	5	CD36	7	80303418	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	7546544	80303418	78835245	77	12097										
TFEC	0	genome.wustl.edu	37	chr7	115580952	115580952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gccaagtgaagccagggttgGcagaccatgagtacgagcct	14	10	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	7	115580952	115580952	G	T	SNP	TFEC	ENST00000265440	human	ensembl	69_37n	-1	known	missense	c.697	p.P233T	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFEC	HGNC	ENSG00000105967	69	0	0	43	14	24.56	-	-	-	T	115580952	G	T	115580952	3	4	198	1	0	0	0	0	1	0	0	0	15897	1203	42	4	350	4	TFEC	7	115580952	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	35277534	115580952	43557711	78	12098										
NUP205	0	genome.wustl.edu	37	chr7	135300790	135300790	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cctacacctcttactggatgAcatgccagtgaaaccatact	6	13	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	7	135300790	135300790	A	G	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	missense	c.3437	p.D1146G	1.000	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	196	0	0	129	21	14	-	-	-	G	135300790	A	G	135300790	3	3	198	1	0	0	0	0	1	0	0	0	10832	275	10	5	3531	5	NUP205	7	135300790	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	19719838	135300790	23837873	79	12099										
TCEA1	0	genome.wustl.edu	37	chr8	54900706	54900706	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gagctgcagcaagcatctccCtacacttcaaccgcacagaa	7	15	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	54900706	54900706	C	A	SNP	TCEA1	ENST00000521604	human	ensembl	69_37n	-1	known	missense	c.434	p.R145M	1.000	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735	205	0	0	275	58	17.42	-	-	-	A	54900706	C	A	54900706	3	1	198	1	0	0	0	0	1	0	0	0	15762	681	24	4	495	4	TCEA1	8	54900706	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		54900706	91463316	80	12100										
RALYL	0	genome.wustl.edu	37	chr8	85833143	85833143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tctcagtttctacagataaaGtgatctgaaataacgcatga	7	7	3	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	85833143	85833143	G	T	SNP	RALYL	ENST00000521268	human	ensembl	69_37n	1	known	missense	c.873	p.K291N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672	62	0	0	74	16	17.78	-	-	-	T	85833143	G	T	85833143	3	4	198	1	0	0	0	0	1	0	0	0	13103	1020	36	4	946	4	RALYL	8	85833143	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	30932437	85833143	60530879	81	12101										
FZD6	0	genome.wustl.edu	37	chr8	104340619	104340619	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	catgcacagaatgggctgggTtttttaaacgaaatcgcaag	11	7	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	104340619	104340619	T	G	SNP	FZD6	ENST00000358755	human	ensembl	69_37n	1	known	missense	c.1516	p.F506V	1.000	pfam_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930	253	0	0	406	110	21.28	-	-	-	G	104340619	T	G	104340619	3	3	198	1	0	0	0	0	1	0	0	0	6183	1725	60	5	1530	5	FZD6	8	104340619	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	18507476	104340619	42023403	82	12102										
DCAF13	0	genome.wustl.edu	37	chr8	104452383	104452383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gggaggtatatcatacaaagAgaatgcaacatgttatctgt	10	5	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	104452383	104452383	A	G	SNP	DCAF13	ENST00000297579	human	ensembl	69_37n	1	known	missense	c.1426	p.R476G	0.961	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934	297	0	0	524	82	13.51	-	-	-	G	104452383	A	G	104452383	3	3	198	1	0	0	0	0	1	0	0	0	4298	296	11	5	1460	5	DCAF13	8	104452383	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	111764	104452383	41911639	83	12103										
RIMS2	0	genome.wustl.edu	37	chr8	104973347	104973347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctatgactgtgatgatggaaTtggtgtagtatcaggtaaga	13	3	1	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	104973347	104973347	T	C	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2756	p.I919T	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	271	0	0	438	60	12.05	-	-	-	C	104973347	T	C	104973347	3	2	198	1	0	0	0	0	1	0	0	0	13454	1493	52	5	2940	5	RIMS2	8	104973347	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	520964	104973347	41390675	84	12104										
ZFPM2	0	genome.wustl.edu	37	chr8	106814808	106814808	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggacgtgcccatagatctcaGcaaaaagtgtttatctcagt	9	9	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	8	106814808	106814808	G	C	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.2498	p.S833T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	52	0	0	109	28	20.29	-	-	-	C	106814808	G	C	106814808	3	2	198	1	0	0	0	0	1	0	0	0	17754	971	34	4	2528	4	ZFPM2	8	106814808	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1841461	106814808	39549214	85	12105										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18474248	18474248	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agcatggaatgctgccgtcgGgcaactcctggcacactgct	12	13	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	9	18474248	18474248	G	C	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	silent	c.18	p.R6	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	194	0	0	55	27	32.93	-	-	-	C	18474248	G	C	18474248	2	2	198	1	0	0	0	0	0	0	0	1	274	1219	43	4		4	ADAMTSL1	9	18474248	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		18474248	122739183	86	12106										
PAX5	0	genome.wustl.edu	37	chr9	37015189	37015189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgatgcttcctgtctcataaTacctaggacccaaagagaaa	7	10	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	9	37015189	37015189	T	C	SNP	PAX5	ENST00000358127	human	ensembl	69_37n	-1	known	missense	c.215	p.Y72C	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	96	0	0	76	24	24	-	-	-	C	37015189	T	C	37015189	3	2	198	1	0	0	0	0	1	0	0	0	11555	1406	49	5	992	5	PAX5	9	37015189	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	18540941	37015189	104198242	87	12107										
FGD3	0	genome.wustl.edu	37	chr9	95795090	95795090	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccgagttcaaggccgagaacAgccggcagagccgtgtctgc	14	13	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	9	95795090	95795090	A	T	SNP	FGD3	ENST00000337352	human	ensembl	69_37n	1	known	missense	c.1720	p.S574C	0.999	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084	123	0	0	30	34	53.12	-	-	-	T	95795090	A	T	95795090	3	4	198	1	0	0	0	0	1	0	0	0	5880	188	7	5	1774	5	FGD3	9	95795090	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	58779901	95795090	45418341	88	12108										
C9orf156	0	genome.wustl.edu	37	chr9	100675657	100675657	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ttttttgggtgaggaaaaagGtaaaagtagaaatgaaatgg	13	0	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	9	100675657	100675657	G	C	SNP	C9orf156	ENST00000455506	human	ensembl	69_37n	-1	known	nonsense	c.429	p.Y143*	0.000	superfamily_UPF0066_YaeB	pfam_UPF0066,superfamily_UPF0066_YaeB	-	no_start_codon	C9orf156	HGNC	ENSG00000136932	151	0	0	44	51	53.68	-	-	-	C	100675657	G	C	100675657	4	2	198	1	0	0	0	0	0	1	0	0	2490	1276	44	4		4	C9orf156	9	100675657	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	4880567	100675657	40537774	89	12109										
KIAA0368	0	genome.wustl.edu	37	chr9	114145598	114145598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gctcctttggcagggtcacaCattttcacacagacctcaca	7	14	3	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	9	114145598	114145598	C	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.4230	p.M1410I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	143	0	0	64	103	61.68	-	-	-	A	114145598	C	A	114145598	3	1	198	1	0	0	0	0	1	0	0	0	8223	478	17	4	1887	4	KIAA0368	9	114145598	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	13469941	114145598	27067833	90	12110										
SGMS1	0	genome.wustl.edu	37	chr10	52103376	52103376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aaatgtgtccggtagtggagGctgcacctccttaggaggta	14	8	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	10	52103376	52103376	G	A	SNP	SGMS1	ENST00000361781	human	ensembl	69_37n	-1	known	missense	c.499	p.P167S	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964	98	0	0	33	15	31.25	-	-	-	A	52103376	G	A	52103376	3	1	198	1	0	0	0	0	1	0	0	0	14302	1203	42	4	762	4	SGMS1	10	52103376	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		52103376	83431371	91	12111										
HERC4	0	genome.wustl.edu	37	chr10	69793826	69793829	+	Frame_Shift_Del	DEL	TGCA	TGCA	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gggctcctcctgctgcaactTgcatgaaagggattccaagc							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	TGCA	TGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	10	69793826	69793829	TGCA	-	DEL	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	frame_shift_del	c.581_578	p.M193fs	1.000:1.000:1.000:1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	184	0	0	70	25	26.04	-	-	-	-	69793829	TGCA	-	69793826	7	5	198	1	0	1	0	1	0	0	0	0	7111	1812	63	0	2676	0	HERC4	10	69793826	Frame_Shift_Del	DEL	TGCA	TCGA-A8-A08R-01A-11W-A050-09	17690450	69793826	65740921	92	12112										
EMX2	0	genome.wustl.edu	37	chr10	119307628	119307628	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gttcaaaaggcagaagctggAggaagaaggctcagattcgc	14	7	2	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	10	119307628	119307628	A	G	SNP	EMX2	ENST00000369201	human	ensembl	69_37n	1	known	missense	c.644	p.E215G	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_HTH_motif,pfscan_Homeodomain	-	no_errors	EMX2	HGNC	ENSG00000170370	113	0	0	73	17	18.89	-	-	-	G	119307628	A	G	119307628	3	3	198	1	0	0	0	0	1	0	0	0	5145	304	11	5	654	5	EMX2	10	119307628	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	49513802	119307628	16227119	93	12113										
BAG3	0	genome.wustl.edu	37	chr10	121429661	121429662	+	Frame_Shift_Del	DEL	CC	CC	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggtggcagcggcggcggcagCccagcccccagcctcccacg							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	10	121429661	121429662	CC	-	DEL	BAG3	ENST00000369085	human	ensembl	69_37n	1	known	frame_shift_del	c.479_480	p.Q161fs	0.176:0.104	NULL	pfam_BAG_domain,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_Rsp5_WWP	-	no_errors	BAG3	HGNC	ENSG00000151929	24	0	0	7	2	22.22	-	-	-	-	121429662	CC	-	121429661	7	5	198	1	0	1	0	1	0	0	0	0	1292	739	26	0	485	0	BAG3	10	121429661	Frame_Shift_Del	DEL	CC	TCGA-A8-A08R-01A-11W-A050-09	2122033	121429661	14105086	94	12114										
OR52M1	0	genome.wustl.edu	37	chr11	4566606	4566606	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agcctgcaccagcccatgtaCtttttcttgtgcatgttggc	9	12	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	4566606	4566606	C	A	SNP	OR52M1	ENST00000360213	human	ensembl	69_37n	1	known	nonsense	c.186	p.Y62*	0.685	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52M1	HGNC	ENSG00000197790	398	0	0	175	39	18.22	-	-	-	A	4566606	C	A	4566606	4	1	198	1	0	0	0	0	0	1	0	0	11199	576	20	4	188	4	OR52M1	11	4566606	Nonsense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		4566606	130439910	95	12115										
NELL1	0	genome.wustl.edu	37	chr11	20949974	20949974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtccccctctcaattgctccCcagactccctcccagtgcac	5	21	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	20949974	20949974	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.946	p.P316S	0.285	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	238	0	0	90	51	36.17	-	-	-	T	20949974	C	T	20949974	3	4	198	1	0	0	0	0	1	0	0	0	10405	623	22	4	980	4	NELL1	11	20949974	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	16383368	20949974	114056542	96	12116										
FAT3	0	genome.wustl.edu	37	chr11	92534181	92534181	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tcacaaagggtaattttaacCagctgaaaaatacagtgctt	7	7	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	92534181	92534181	C	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.8002	p.Q2668E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	80	0	0	29	43	59.72	-	-	-	G	92534181	C	G	92534181	3	3	198	1	0	0	0	0	1	0	0	0	5737	595	21	4	8036	4	FAT3	11	92534181	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	71584207	92534181	42472335	97	12117										
ZC3H12C	0	genome.wustl.edu	37	chr11	110035764	110035764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	accggtcctatgtcagctccCccgacccacagctagaggag	10	16	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	110035764	110035764	C	T	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	missense	c.1954	p.P652S	0.914	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	64	0	0	63	18	22.22	-	-	-	T	110035764	C	T	110035764	3	4	198	1	0	0	0	0	1	0	0	0	17659	623	22	4	1976	4	ZC3H12C	11	110035764	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	17501583	110035764	24970752	98	12118										
NCAM1	0	genome.wustl.edu	37	chr11	113103076	113103076	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccctctgccagctatctggaGgtgagtcaggatgggggtgg	17	9	3	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	113103076	113103076	G	C	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.1395	p.E465D	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	120	0	0	97	28	22.4	-	-	-	C	113103076	G	C	113103076	3	2	198	1	0	0	0	0	1	0	0	0	10274	1014	35	4	1468	4	NCAM1	11	113103076	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	3067312	113103076	21903440	99	12119										
NCAPD3	0	genome.wustl.edu	37	chr11	134073802	134073802	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtaaaaacccggtgtgggatCtggtaaagcaagatcataag	12	6	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	134073802	134073802	C	G	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	splice_site	c.1216-1	e11-1	1.000	-	-	-	no_errors	NCAPD3	HGNC	ENSG00000151503	67	0	0	49	13	20.97	-	-	-	G	134073802	C	G	134073802	5	3	198	1	0	0	0	0	0	0	1	0	10278	927	32	2	3381	2	NCAPD3	11	134073802	Splice_Site	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	20970726	134073802	932714	100	12120										
B3GAT1	0	genome.wustl.edu	37	chr11	134253872	134253872	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggttgggcacgtgcagcagcGtgttggccatgcgcgtcagc	17	11	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	11	134253872	134253872	G	T	SNP	B3GAT1	ENST00000537389	human	ensembl	69_37n	-1	known	missense	c.362	p.T121K	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT1	HGNC	ENSG00000109956	13	0	0	2	4	66.67	-	-	-	T	134253872	G	T	134253872	3	4	198	1	0	0	0	0	1	0	0	0	1257	1145	40	3	693	3	B3GAT1	11	134253872	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	180070	134253872	752644	101	12121										
RAD51AP1	0	genome.wustl.edu	37	chr12	4653024	4653024	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	caaaacctaacttgaacaatCtccggaaagaagaaatccca	5	11	1	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	4653024	4653024	C	G	SNP	RAD51AP1	ENST00000228843	human	ensembl	69_37n	1	known	missense	c.163	p.L55V	0.000	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247	196	0	0	87	27	23.68	-	-	-	G	4653024	C	G	4653024	3	3	198	1	0	0	0	0	1	0	0	0	13069	913	32	2	173	2	RAD51AP1	12	4653024	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		4653024	129198871	102	12122										
KLRC1	0	genome.wustl.edu	37	chr12	10600152	10600152	+	Frame_Shift_Del	DEL	T	T	-													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	catgtttgaaagccaaaccaTtcattgtcacccatggatga							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	10600152	10600152	T	-	DEL	KLRC1	ENST00000359151	human	ensembl	69_37n	-1	known	frame_shift_del	c.569	p.N190fs	0.196	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC1	HGNC	ENSG00000134545	257	0	0	144	31	17.42	-	-	-	-	10600152	T	-	10600152	7	5	198	1	0	1	0	1	0	0	0	0	8468	1493	52	0	140	0	KLRC1	12	10600152	Frame_Shift_Del	DEL	T	TCGA-A8-A08R-01A-11W-A050-09	5947128	10600152	123251743	103	12123										
TAS2R9	0	genome.wustl.edu	37	chr12	10961953	10961953	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agactgggtagtacacgatgAggaggagcagaaagatgatc	15	5	0	5			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	10961953	10961953	A	T	SNP	TAS2R9	ENST00000240691	human	ensembl	69_37n	-1	known	missense	c.722	p.L241H	0.011	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R9	HGNC	ENSG00000121381	189	0	0	135	32	19.16	-	-	-	T	10961953	A	T	10961953	3	4	198	1	0	0	0	0	1	0	0	0	15680	304	11	5	220	5	TAS2R9	12	10961953	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	361801	10961953	122889942	104	12124										
CNTN1	0	genome.wustl.edu	37	chr12	41337509	41337509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agggaaagctaatagcactgGaacccttgttatcacaggta	10	8	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	41337509	41337509	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.1490	p.G497E	0.991	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	285	0	0	118	87	42.44	-	-	-	A	41337509	G	A	41337509	3	1	198	1	0	0	0	0	1	0	0	0	3670	1174	41	2	1536	2	CNTN1	12	41337509	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	30375556	41337509	92514386	105	12125										
SLC11A2	0	genome.wustl.edu	37	chr12	51384687	51384687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctacaaagtacatattgatgGaacagatgataaggaccaag	9	6	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	51384687	51384687	G	C	SNP	SLC11A2	ENST00000394904	human	ensembl	69_37n	-1	known	missense	c.1553	p.S518C	0.974	NULL	pfam_Nat-R-assoc-macro_Nramp,prints_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	-	no_errors	SLC11A2	HGNC	ENSG00000110911	187	0	0	147	23	13.53	-	-	-	C	51384687	G	C	51384687	3	2	198	1	0	0	0	0	1	0	0	0	14470	1174	41	2	309	2	SLC11A2	12	51384687	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	10047178	51384687	82467208	106	12126										
KRT79	0	genome.wustl.edu	37	chr12	53218090	53218090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aggtccaggttgcggttgttGtccatggacagcaccacatt	12	10	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	53218090	53218090	G	C	SNP	KRT79	ENST00000330553	human	ensembl	69_37n	-1	known	missense	c.912	p.D304E	1.000	pfam_F	pfam_F,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640	170	0	0	91	21	18.75	-	-	-	C	53218090	G	C	53218090	3	2	198	1	0	0	0	0	1	0	0	0	8545	1368	48	4	715	4	KRT79	12	53218090	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1833403	53218090	80633805	107	12127										
RDH5	0	genome.wustl.edu	37	chr12	56118203	56118203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gccctgactgctcgacacccCcgaacccgctacagcccagg	9	20	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	56118203	56118203	C	T	SNP	RDH5	ENST00000257895	human	ensembl	69_37n	1	known	silent	c.831	p.P277	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437	83	0	0	76	11	12.64	-	-	-	T	56118203	C	T	56118203	2	4	198	1	0	0	0	0	0	0	0	1	13278	610	22	4		4	RDH5	12	56118203	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	2900113	56118203	77733692	108	12128										
PHLDA1	0	genome.wustl.edu	37	chr12	76425062	76425062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gctgcgcttctccagcacgcCctccttcagcgctttgcagc	9	18	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	76425062	76425062	C	A	SNP	PHLDA1	ENST00000266671	human	ensembl	69_37n	-1	known	missense	c.460	p.G154C	1.000	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289	25	0	0	8	9	52.94	-	-	-	A	76425062	C	A	76425062	3	1	198	1	0	0	0	0	1	0	0	0	11922	623	22	4	749	4	PHLDA1	12	76425062	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	20306859	76425062	57426833	109	12129										
CUX2	0	genome.wustl.edu	37	chr12	111785467	111785467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gccctgactctgagactgagGaccagaagccaaccgtgaag	12	12	1	5			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	111785467	111785467	G	C	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	missense	c.3799	p.D1267H	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	75	0	0	30	9	23.08	-	-	-	C	111785467	G	C	111785467	3	2	198	1	0	0	0	0	1	0	0	0	4096	1174	41	2	3885	2	CUX2	12	111785467	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	35360405	111785467	22066428	110	12130										
CCDC60	0	genome.wustl.edu	37	chr12	119943035	119943035	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cccccaagtgtgaacacccaGgtgaccagcagcaaggacat	10	14	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	12	119943035	119943035	G	C	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	missense	c.810	p.Q270H	0.011	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	92	0	0	43	47	52.22	-	-	-	C	119943035	G	C	119943035	3	2	198	1	0	0	0	0	1	0	0	0	2858	991	35	4	836	4	CCDC60	12	119943035	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	8157568	119943035	13908860	111	12131										
EDNRB	0	genome.wustl.edu	37	chr13	78474078	78474078	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agtgaagccatgttgataccAatatagtccaataccaacag	7	9	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	13	78474078	78474078	A	G	SNP	EDNRB	ENST00000334286	human	ensembl	69_37n	-1	known	silent	c.1110	p.I370	0.896	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ETB_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Bombsn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	EDNRB	HGNC	ENSG00000136160	187	0	0	127	44	25.73	-	-	-	G	78474078	A	G	78474078	2	3	198	1	0	0	0	0	0	0	0	1	4955	126	5	5		5	EDNRB	13	78474078	Silent	SNP	A	TCGA-A8-A08R-01A-11W-A050-09		78474078	36695800	112	12132										
NALCN	0	genome.wustl.edu	37	chr13	101733990	101733990	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcgacattgctatgatcttcAtggtaacctggagaaaaagc	10	8	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	13	101733990	101733990	A	C	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3773	p.M1258R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	378	0	0	142	146	50.69	-	-	-	C	101733990	A	C	101733990	3	2	198	1	0	0	0	0	1	0	0	0	10220	217	8	5	1487	5	NALCN	13	101733990	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	23259912	101733990	13435888	113	12133										
MYH6	0	genome.wustl.edu	37	chr14	23862941	23862941	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agctccaggtcatcaatgtcCttcttgagctctgagcactc	8	13	4	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	14	23862941	23862941	C	T	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	silent	c.2862	p.K954	0.988	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	338	0	0	342	58	14.5	-	-	-	T	23862941	C	T	23862941	2	4	198	1	0	0	0	0	0	0	0	1	10110	680	24	4		4	MYH6	14	23862941	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		23862941	83486599	114	12134										
PYGL	0	genome.wustl.edu	37	chr14	51398410	51398410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cctgccatccatctcggatcTtctgattgaaaatcccatat	5	13	3	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	14	51398410	51398410	T	G	SNP	PYGL	ENST00000216392	human	ensembl	69_37n	-1	known	missense	c.509	p.K170T	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504	55	0	0	28	24	46.15	-	-	-	G	51398410	T	G	51398410	3	3	198	1	0	0	0	0	1	0	0	0	12944	1609	56	5	2102	5	PYGL	14	51398410	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	27535469	51398410	55951130	115	12135										
DUOX1	0	genome.wustl.edu	37	chr15	45437157	45437157	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aaatctccggggagctctgaAggagagcgggttgagcatcc	15	9	2	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	15	45437157	45437157	A	T	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.2201	p.K734M	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	117	0	0	63	13	16.88	-	-	-	T	45437157	A	T	45437157	3	4	198	1	0	0	0	0	1	0	0	0	4835	72	3	5	2267	5	DUOX1	15	45437157	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09		45437157	57094235	116	12136										
FANCI	0	genome.wustl.edu	37	chr15	89807217	89807217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	caagatgaatcttcaagaaaTaccacctttggtctatcagc	6	10	4	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	15	89807217	89807217	T	C	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.629	p.I210T	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	298	0	0	155	79	33.76	-	-	-	C	89807217	T	C	89807217	3	2	198	1	0	0	0	0	1	0	0	0	5715	1406	49	5	655	5	FANCI	15	89807217	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	44370060	89807217	12724175	117	12137										
TRAP1	0	genome.wustl.edu	37	chr16	3729754	3729754	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tggcaatcgtccccaggttgGacaccagctcttcctgtgtc	10	14	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	16	3729754	3729754	G	C	SNP	TRAP1	ENST00000246957	human	ensembl	69_37n	-1	known	missense	c.509	p.S170C	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602	42	0	0	22	9	29.03	-	-	-	C	3729754	G	C	3729754	3	2	198	1	0	0	0	0	1	0	0	0	16551	1174	41	2	1661	2	TRAP1	16	3729754	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		3729754	86624999	118	12138										
SMG1	0	genome.wustl.edu	37	chr16	18846446	18846446	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agtggcagtgatgaactgacAcactgttgggggtggctggg	18	6	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	16	18846446	18846446	A	G	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.8098	p.C2700R	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	81	0	0	48	24	33.33	-	-	-	G	18846446	A	G	18846446	3	3	198	1	0	0	0	0	1	0	0	0	14884	159	6	5	2947	5	SMG1	16	18846446	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	15116692	18846446	71508307	119	12139										
ITGAX	0	genome.wustl.edu	37	chr16	31371718	31371718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gatgggaagaaagaaggcgaCagcctggattataaggatgt	15	4	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	16	31371718	31371718	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.795	p.D265	0.011	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	29	0	0	20	7	25.93	-	-	-	T	31371718	C	T	31371718	2	4	198	1	0	0	0	0	0	0	0	1	7943	477	17	4		4	ITGAX	16	31371718	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	12525272	31371718	58983035	120	12140										
PHKB	0	genome.wustl.edu	37	chr16	47683069	47683069	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gattattttcgacctaagtgAtttctacatgtctcaggatg	8	7	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	16	47683069	47683069	A	G	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	1	known	missense	c.1751	p.D584G	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	354	0	0	167	29	14.8	-	-	-	G	47683069	A	G	47683069	3	3	198	1	0	0	0	0	1	0	0	0	11919	333	12	5	1880	5	PHKB	16	47683069	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	16311351	47683069	42671684	121	12141										
CDH13	0	genome.wustl.edu	37	chr16	83378511	83378511	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aatggcaaaactctcgagggGccggtgcctctggaagtcat	13	10	3	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	16	83378511	83378511	G	C	SNP	CDH13	ENST00000566620	human	ensembl	69_37n	1	known	silent	c.681	p.G227	0.423	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945	80	0	0	22	36	62.07	-	-	-	C	83378511	G	C	83378511	2	2	198	1	0	0	0	0	0	0	0	1	3128	1190	42	4		4	CDH13	16	83378511	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	35695442	83378511	6976242	122	12142										
ANKFY1	0	genome.wustl.edu	37	chr17	4111293	4111293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctccactttgatggctttatGtagcgggtactctgtcttgg	11	9	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	4111293	4111293	G	A	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.793	p.H265Y	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	145	0	0	66	54	45	-	-	-	A	4111293	G	A	4111293	3	1	198	1	0	0	0	0	1	0	0	0	626	1377	48	4	3017	4	ANKFY1	17	4111293	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		4111293	77083917	123	12143										
FXR2	0	genome.wustl.edu	37	chr17	7497244	7497244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cggcctgggtacctgcaggtAggagaggtgatactccagca	15	10	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	7497244	7497244	A	G	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	missense	c.1099	p.Y367H	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	85	0	0	33	35	51.47	-	-	-	G	7497244	A	G	7497244	3	3	198	1	0	0	0	0	1	0	0	0	6165	420	15	5	850	5	FXR2	17	7497244	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	3385951	7497244	73697966	124	12144										
TP53	0	genome.wustl.edu	37	chr17	7577566	7577567	+	Frame_Shift_Ins	INS	-	-	A													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccgcccatgcaggaactgttINSacacatgtagttgtagtgga							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	7577566	7577567	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.715_714	p.N238fs	1.000:0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	218	0	0	98	52	34.67	-	-	-	A	7577567	-	A	7577566	7	5	198	1	0	1	1	0	0	0	0	0	16477	1754	61	0	575	0	TP53	17	7577566	Frame_Shift_Ins	INS	-	TCGA-A8-A08R-01A-11W-A050-09	80322	7577566	73617644	125	12145										
TMEM107	0	genome.wustl.edu	37	chr17	8077909	8077909	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	atgaagaaggacagggccacGgatgcactacagtgagcccc	13	11	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	8077909	8077909	G	C	SNP	TMEM107	ENST00000316425	human	ensembl	69_37n	-1	known	silent	c.300	p.S100	0.137	NULL	NULL	-	no_errors	TMEM107	HGNC	ENSG00000179029	127	0	0	48	48	50	-	-	-	C	8077909	G	C	8077909	2	2	198	1	0	0	0	0	0	0	0	1	16118	1103	39	3		3	TMEM107	17	8077909	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	500343	8077909	73117301	126	12146										
NCOR1	0	genome.wustl.edu	37	chr17	15938204	15938204	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	agccttgcccaggtataggaGacttagatttcctgctgttt	10	9	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	15938204	15938204	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.7010	p.S2337F	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	330	0	0	106	60	36.14	-	-	-	A	15938204	G	A	15938204	3	1	198	1	0	0	0	0	1	0	0	0	10307	942	33	2	320	2	NCOR1	17	15938204	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	7860295	15938204	65257006	127	12147										
CNTNAP1	0	genome.wustl.edu	37	chr17	40840974	40840974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcatggagctgctcaaggtgGatggtcaactggtcaacctg	14	9	3	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	40840974	40840974	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.1537	p.D513N	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	253	0	0	125	74	37.19	-	-	-	A	40840974	G	A	40840974	3	1	198	1	0	0	0	0	1	0	0	0	3676	1174	41	2	1575	2	CNTNAP1	17	40840974	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	24902770	40840974	40354236	128	12148										
LRRC46	0	genome.wustl.edu	37	chr17	45909569	45909569	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gatggggaactgtcagagaaGatgtgagtgcatgggggaga	19	3	1	4			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	45909569	45909569	G	A	SNP	LRRC46	ENST00000269025	human	ensembl	69_37n	1	known	silent	c.114	p.K38	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC46	HGNC	ENSG00000141294	228	0	0	123	86	41.15	-	-	-	A	45909569	G	A	45909569	2	1	198	1	0	0	0	0	0	0	0	1	9069	933	33	2		2	LRRC46	17	45909569	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	5068595	45909569	35285641	129	12149										
SGCA	0	genome.wustl.edu	37	chr17	48247563	48247563	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	accccaggtgatgggatcctGgagcatgacccgttcttctg	12	12	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	48247563	48247563	G	C	SNP	SGCA	ENST00000504073	human	ensembl	69_37n	1	novel	missense	c.124	p.G42R	1.000	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SGCA	HGNC	ENSG00000108823	110	0	0	49	48	49.48	-	-	-	C	48247563	G	C	48247563	3	2	198	1	0	0	0	0	1	0	0	0	14287	1335	47	4	833	4	SGCA	17	48247563	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	2337994	48247563	32947647	130	12150										
BTBD17	0	genome.wustl.edu	37	chr17	72352875	72352875	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gggcgttctcaaccaggtacTcggagttgcgccgctgcagg	15	12	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	72352875	72352875	T	A	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	missense	c.1358	p.E453V	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	23	0	0	3	9	75	-	-	-	A	72352875	T	A	72352875	3	1	198	1	0	0	0	0	1	0	0	0	1550	1551	54	5	82	5	BTBD17	17	72352875	Missense_Mutation	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	24105312	72352875	8842335	131	12151										
TRIM47	0	genome.wustl.edu	37	chr17	73872166	73872166	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccatcctccagggccagcctTagtgccagcagctcctgtgc	10	17	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	17	73872166	73872166	T	G	SNP	TRIM47	ENST00000254816	human	ensembl	69_37n	-1	known	silent	c.1017	p.L339	0.004	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM47	HGNC	ENSG00000132481	27	0	0	16	6	27.27	-	-	-	G	73872166	T	G	73872166	2	3	198	1	0	0	0	0	0	0	0	1	16618	1741	61	5		5	TRIM47	17	73872166	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	1519291	73872166	7323044	132	12152										
RGL3	0	genome.wustl.edu	37	chr19	11507984	11507984	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagggctggggcacattgtgCttctgcaaggctcgccggac	15	12	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	11507984	11507984	C	T	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	silent	c.1968	p.K656	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	46	0	0	12	22	62.86	-	-	-	T	11507984	C	T	11507984	2	4	198	1	0	0	0	0	0	0	0	1	13361	796	28	4		4	RGL3	19	11507984	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		11507984	47620999	133	12153										
OR10H4	0	genome.wustl.edu	37	chr19	16060405	16060405	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgtgaaaacaagacatcatcTgtcatcatgggtgtgatgct	10	7	4	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	16060405	16060405	T	G	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	silent	c.588	p.S196	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	431	0	0	387	813	67.75	-	-	-	G	16060405	T	G	16060405	2	3	198	1	0	0	0	0	0	0	0	1	10981	1567	55	5		5	OR10H4	19	16060405	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	4552421	16060405	43068578	134	12154										
FAM129C	0	genome.wustl.edu	37	chr19	17653023	17653023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aggccgagcggagccgggggCgcttggggcagctggcagca	21	11	0	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	17653023	17653023	C	T	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.1342	p.R448C	0.001	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	88	0	0	56	58	47.54	-	-	-	T	17653023	C	T	17653023	3	4	198	1	0	0	0	0	1	0	0	0	5478	768	27	1	1384	1	FAM129C	19	17653023	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	1592618	17653023	41475960	135	12155										
FCHO1	0	genome.wustl.edu	37	chr19	17889452	17889452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggcttcacctccagcccctcCcctttctcctcctcgtcgcc	5	23	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	17889452	17889452	C	T	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	silent	c.1386	p.S462	0.958	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	24	0	0	34	32	48.48	-	-	-	T	17889452	C	T	17889452	2	4	198	1	0	0	0	0	0	0	0	1	5833	610	22	4		4	FCHO1	19	17889452	Silent	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	236429	17889452	41239531	136	12156										
COPE	0	genome.wustl.edu	37	chr19	19016390	19016390	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ggcaggagggctcaccgggcGaggtccaggcggtccagctt	18	12	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	19016390	19016390	G	A	SNP	COPE	ENST00000262812	human	ensembl	69_37n	-1	known	silent	c.492	p.L164	0.725	pfam_Coatomer_esu,pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	53	0	0	43	54	55.67	-	-	-	A	19016390	G	A	19016390	2	1	198	1	0	0	0	0	0	0	0	1	3760	1045	37	1		1	COPE	19	19016390	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1126938	19016390	40112593	137	12157										
ZNF30	0	genome.wustl.edu	37	chr19	35435393	35435393	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	acatagcagaatccatactgGtaagaagccctatgagtgta	9	8	0	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	35435393	35435393	G	C	SNP	ZNF30	ENST00000439785	human	ensembl	69_37n	1	known	missense	c.1526	p.G509A	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661	194	0	0	201	26	11.45	-	-	-	C	35435393	G	C	35435393	3	2	198	1	0	0	0	0	1	0	0	0	17926	1261	44	4	1540	4	ZNF30	19	35435393	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	16419003	35435393	23693590	138	12158										
ZNF565	0	genome.wustl.edu	37	chr19	36673699	36673699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cgcagtccttacattcatagGgtctgtcgccagtatggact	10	11	2	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	36673699	36673699	G	T	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	missense	c.1169	p.P390H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	98	0	0	91	30	24.79	-	-	-	T	36673699	G	T	36673699	3	4	198	1	0	0	0	0	1	0	0	0	18092	1232	43	4	334	4	ZNF565	19	36673699	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1238306	36673699	22455284	139	12159										
ZNF570	0	genome.wustl.edu	37	chr19	37975362	37975362	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cctatgaatgtaaggaatgtAggaaagccttcagtcagaat	10	6	2	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	37975362	37975362	A	C	SNP	ZNF570	ENST00000330173	human	ensembl	69_37n	1	known	silent	c.838	p.R280	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827	60	0	0	58	14	19.44	-	-	-	C	37975362	A	C	37975362	2	2	198	1	0	0	0	0	0	0	0	1	18098	411	15	5		5	ZNF570	19	37975362	Silent	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	1301663	37975362	21153621	140	12160										
MAP4K1	0	genome.wustl.edu	37	chr19	39098533	39098533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tcgtcatagtcatcgtcagaCgactctgacagttgcttcct	8	12	4	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	39098533	39098533	C	T	SNP	MAP4K1	ENST00000591921	human	ensembl	69_37n	-1	novel	missense	c.239	p.R80H	0.051	NULL	pfam_Citron,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K1	HGNC	ENSG00000104814	38	0	0	15	6	28.57	-	-	-	T	39098533	C	T	39098533	3	4	198	1	0	0	0	0	1	0	0	0	9330	523	19	1	1503	1	MAP4K1	19	39098533	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	1123171	39098533	20030450	141	12161										
LRFN1	0	genome.wustl.edu	37	chr19	39798427	39798427	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gctttgtccgccgggcgcggCgcgggtaactgtggctctgg	18	12	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	39798427	39798427	C	G	SNP	LRFN1	ENST00000248668	human	ensembl	69_37n	-1	known	missense	c.2162	p.R721P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN1	HGNC	ENSG00000128011	16	0	0	5	4	44.44	-	-	-	G	39798427	C	G	39798427	3	3	198	1	0	0	0	0	1	0	0	0	9003	768	27	3	157	3	LRFN1	19	39798427	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	699894	39798427	19330556	142	12162										
SIGLEC9	0	genome.wustl.edu	37	chr19	51628959	51628959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ctgtgagcaggggacaccccCtatgatctcctggataggga	13	11	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	51628959	51628959	C	T	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	missense	c.527	p.P176L	0.000	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	96	0	0	58	11	15.94	-	-	-	T	51628959	C	T	51628959	3	4	198	1	0	0	0	0	1	0	0	0	14404	681	24	4	533	4	SIGLEC9	19	51628959	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	11830532	51628959	7500024	143	12163										
FPR2	0	genome.wustl.edu	37	chr19	52272299	52272299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gctgcatttgtgtcctgcatCcagtctgggcccagaaccac	10	14	1	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	19	52272299	52272299	C	A	SNP	FPR2	ENST00000340023	human	ensembl	69_37n	1	known	missense	c.388	p.P130T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_Anphylx_rcpt,prints_P2_purnocptor,prints_DEZorph_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_P2_purnocptor,prints_DEZorph_rcpt	-	no_errors	FPR2	HGNC	ENSG00000171049	440	0	0	246	95	27.7	-	-	-	A	52272299	C	A	52272299	3	1	198	1	0	0	0	0	1	0	0	0	6087	855	30	2	390	2	FPR2	19	52272299	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	643340	52272299	6856684	144	12164										
GSS	0	genome.wustl.edu	37	chr20	33530406	33530406	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gcgctggaacatgtagtctgAgcgattcaggcccaggaaca	13	10	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	20	33530406	33530406	A	C	SNP	GSS	ENST00000216951	human	ensembl	69_37n	-1	known	missense	c.376	p.S126A	1.000	pfam_Glutathione_synthase_euk,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_fold,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	-	no_errors	GSS	HGNC	ENSG00000100983	167	0	0	81	22	21.36	-	-	-	C	33530406	A	C	33530406	3	2	198	1	0	0	0	0	1	0	0	0	6880	304	11	5	1084	5	GSS	20	33530406	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09		33530406	29495114	145	12165										
SLC12A5	0	genome.wustl.edu	37	chr20	44678383	44678383	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	catcgtgggctctgtccttgAgggcacctttctggaaaatc	11	11	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	20	44678383	44678383	A	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2204	p.E735V	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	53	0	0	48	13	20.97	-	-	-	T	44678383	A	T	44678383	3	4	198	1	0	0	0	0	1	0	0	0	14475	304	11	5	2326	5	SLC12A5	20	44678383	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	11147977	44678383	18347137	146	12166										
PREX1	0	genome.wustl.edu	37	chr20	47305213	47305213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	acttgccaagaaagcacttgGggacagtgctcagctttctc	10	11	2	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	20	47305213	47305213	G	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.1316	p.P439H	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	145	0	0	55	31	36.05	-	-	-	T	47305213	G	T	47305213	3	4	198	1	0	0	0	0	1	0	0	0	12557	1232	43	4	3787	4	PREX1	20	47305213	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	2626830	47305213	15720307	147	12167										
BRWD1	0	genome.wustl.edu	37	chr21	40571202	40571202	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	tgagtctctgttttcagattCatcaacattgctctgggcag	9	9	5	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	21	40571202	40571202	C	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	nonsense	c.5140	p.E1714*	0.574	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	66	0	0	41	20	32.79	-	-	-	A	40571202	C	A	40571202	4	1	198	1	0	0	0	0	0	1	0	0	1533	835	29	2	2073	2	BRWD1	21	40571202	Nonsense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09		40571202	7558693	148	12168										
MED15	0	genome.wustl.edu	37	chr22	20918843	20918843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cagcagcagcagcagcaacaGcagcagttccaggctcagca	11	14	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	22	20918843	20918843	G	A	SNP	MED15	ENST00000423862	human	ensembl	69_37n	1	novel	missense	c.379	p.A127T	1.000	NULL	pfam_Mediator_Med15_met	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MED15	HGNC	ENSG00000099917	19	0	0	9	8	47.06	-	-	-	A	20918843	G	A	20918843	3	1	198	1	0	0	0	0	1	0	0	0	9504	962	34	4	580	4	MED15	22	20918843	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		20918843	30385723	149	12169										
PRAME	0	genome.wustl.edu	37	chr22	22890750	22890750	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aggtgctgcaggagactctgCaaggcagatatggagatgga	16	6	1	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	22	22890750	22890750	C	G	SNP	PRAME	ENST00000398741	human	ensembl	69_37n	-1	known	missense	c.1269	p.L423F	0.024	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	109	0	0	47	73	60.83	-	-	-	G	22890750	C	G	22890750	3	3	198	1	0	0	0	0	1	0	0	0	12501	709	25	4	264	4	PRAME	22	22890750	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	1971907	22890750	28413816	150	12170										
CELSR1	0	genome.wustl.edu	37	chr22	46777911	46777911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccgggcgcgtggtctgcgggGtggtcctccggccagccggc	19	15	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	22	46777911	46777911	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.6920	p.T2307I	0.001	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	19	0	0	3	5	62.5	-	-	-	A	46777911	G	A	46777911	3	1	198	1	0	0	0	0	1	0	0	0	3250	1261	44	4	2184	4	CELSR1	22	46777911	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	23887161	46777911	4526655	151	12171										
MAPK8IP2	0	genome.wustl.edu	37	chr22	51041670	51041670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aggacagcctctccctggggCgctcggagcagccgcacccc	13	18	1	0			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	22	51041670	51041670	C	T	SNP	MAPK8IP2	ENST00000329492	human	ensembl	69_37n	1	known	missense	c.190	p.R64C	1.000	NULL	pfam_PTyr_interaction_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735	23	0	0	20	10	32.26	-	-	-	T	51041670	C	T	51041670	3	4	198	1	0	0	0	0	1	0	0	0	9356	768	27	1	290	1	MAPK8IP2	22	51041670	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	4263759	51041670	262896	152	12172										
MSL3	0	genome.wustl.edu	37	chrX	11781914	11781914	+	Silent	SNP	G	G	A													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	cccagtgttgacctttgtaaGgagatggtggatggattaag							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	11781914	11781914	G	A	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	silent	c.765	p.K255	1.000	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	191	0	0	108	42	28	-	-	-	A	11781914	G	A	11781914	2	1	198	1	0	0	0	0	0	0	0	1	9951	991	35	4		4	MSL3	23	11781914	Silent	SNP	G	TCGA-A8-A08R-01A-11W-A050-09		11781914	143488646	153	12173	144	2								
MSL3	0	genome.wustl.edu	37	chrX	11781915	11781915	+	Nonsense_Mutation	SNP	G	G	T													0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	ccagtgttgacctttgtaagGagatggtggatggattaaga							TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	11781915	11781915	G	T	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	nonsense	c.766	p.E256*	1.000	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	192	0	0	106	41	27.89	-	-	-	T	11781915	G	T	11781915	4	4	198	1	0	0	0	0	0	1	0	0	9951	1175	41	2	796	2	MSL3	23	11781915	Nonsense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	1	11781915	143488645	154	12174	144	2								
TFE3	0	genome.wustl.edu	37	chrX	48896923	48896923	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gtggctggtgtggcctgcagTgatattgggaggctgtggaa	19	5	0	1			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	48896923	48896923	T	A	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	silent	c.243	p.S81	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	111	0	0	41	27	38.57	-	-	-	A	48896923	T	A	48896923	2	1	198	1	0	0	0	0	0	0	0	1	15895	1683	59	5		5	TFE3	23	48896923	Silent	SNP	T	TCGA-A8-A08R-01A-11W-A050-09	37115008	48896923	106373637	155	12175										
KIF4A	0	genome.wustl.edu	37	chrX	69594088	69594088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	aacttcagacagcaaagaagGatgccaaccaagccaagtaa	8	10	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	69594088	69594088	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.1762	p.D588N	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	100	0	0	57	25	30.49	-	-	-	A	69594088	G	A	69594088	3	1	198	1	0	0	0	0	1	0	0	0	8355	1174	41	2	1820	2	KIF4A	23	69594088	Missense_Mutation	SNP	G	TCGA-A8-A08R-01A-11W-A050-09	20697165	69594088	85676472	156	12176										
MUM1L1	0	genome.wustl.edu	37	chrX	105450903	105450903	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gggctctttgcttgagtattAtgctgctgatattagttacc	10	7	1	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	105450903	105450903	A	G	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	missense	c.1478	p.Y493C	0.970	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	117	0	0	45	16	26.23	-	-	-	G	105450903	A	G	105450903	3	3	198	1	0	0	0	0	1	0	0	0	10058	449	16	5	1480	5	MUM1L1	23	105450903	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	35856815	105450903	49819657	157	12177										
DCAF12L2	0	genome.wustl.edu	37	chrX	125298656	125298656	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	catgccaccaaagtagttcaCccagacgtcatcttggttga	8	12	3	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	125298656	125298656	C	G	SNP	DCAF12L2	ENST00000360028	human	ensembl	69_37n	-1	known	missense	c.1252	p.V418L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	75	0	0	49	6	10.91	-	-	-	G	125298656	C	G	125298656	3	3	198	1	0	0	0	0	1	0	0	0	4297	507	18	4	143	4	DCAF12L2	23	125298656	Missense_Mutation	SNP	C	TCGA-A8-A08R-01A-11W-A050-09	19847753	125298656	29971904	158	12178										
SAGE1	0	genome.wustl.edu	37	chrX	134991072	134991072	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gagaagatggaaagtggcaaAccccaaactgataaggtcat	11	7	1	3			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	134991072	134991072	A	G	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	silent	c.1491	p.K497	0.000	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	201	0	0	90	77	45.56	-	-	-	G	134991072	A	G	134991072	2	3	198	1	0	0	0	0	0	0	0	1	13895	40	2	5		5	SAGE1	23	134991072	Silent	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	9692416	134991072	20279488	159	12179										
L1CAM	0	genome.wustl.edu	37	chrX	153136574	153136574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10126582278481	16	0.310022395330102	1.39680013640626	2.18468271334792	0.545035188361228	0.00305644910761707	0.0586119064166567	0	gagggttgcaaggcagaaccActgactccccttcctccacc	9	16	0	2			TCGA-A8-A08R-01A-11W-A050-09	TCGA-A8-A08R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05362091-8e04-46e2-81e7-1efddc0d8c63	f1681b14-25e1-4bc6-a97d-18928662d45b	X	153136574	153136574	A	G	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.467	p.V156A	0.003	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	23	0	0	2	7	77.78	-	-	-	G	153136574	A	G	153136574	3	3	198	1	0	0	0	0	1	0	0	0	8642	159	6	5	3408	5	L1CAM	23	153136574	Missense_Mutation	SNP	A	TCGA-A8-A08R-01A-11W-A050-09	18145502	153136574	2133986	160	12180										
MTOR	0	genome.wustl.edu	37	chr1	11319442	11319442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tgtggtggcagcggtggtggCggcggcaggtccggttccaa	20	9	0	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	11319442	11319442	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.25	p.A9T	0.981	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	110	0	0	26	58	69.05	-	-	-	T	11319442	C	T	11319442	3	4	199	1	0	0	0	0	1	0	0	0	10026	768	27	1	7852	1	MTOR	1	11319442	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09		11319442	237931179	1	12181										
LDLRAD1	0	genome.wustl.edu	37	chr1	54479916	54479916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tggccgccctgacctggggtGcatgatgggagtccaagaat	15	10	0	3			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	54479916	54479916	G	A	SNP	LDLRAD1	ENST00000371360	human	ensembl	69_37n	-1	known	silent	c.195	p.C65	0.001	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985	62	0	0	5	12	70.59	-	-	-	A	54479916	G	A	54479916	2	1	199	1	0	0	0	0	0	0	0	1	8759	1311	46	4		4	LDLRAD1	1	54479916	Silent	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	43160474	54479916	194770705	2	12182										
NPHS2	0	genome.wustl.edu	37	chr1	179523663	179523663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	acaggtcactgaatccaaggCaacctgtggaaagaagaatt	10	8	1	3			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	179523663	179523663	C	T	SNP	NPHS2	ENST00000367615	human	ensembl	69_37n	-1	known	missense	c.742	p.A248T	0.996	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218	154	0	0	85	47	35.34	-	-	-	T	179523663	C	T	179523663	3	4	199	1	0	0	0	0	1	0	0	0	10655	710	25	4	421	4	NPHS2	1	179523663	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	125043747	179523663	69726958	3	12183										
KDM5B	0	genome.wustl.edu	37	chr1	202746170	202746170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	attcattcagtctctggataCgtggcgtaaaatgaagttta	9	6	3	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	202746170	202746170	C	T	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.257	p.R86H	0.987	superfamily_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	199	0	0	198	51	20.48	-	-	-	T	202746170	C	T	202746170	3	4	199	1	0	0	0	0	1	0	0	0	8187	536	19	1	4481	1	KDM5B	1	202746170	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	23222507	202746170	46504451	4	12184										
OBSCN	0	genome.wustl.edu	37	chr1	228464221	228464221	+	Frame_Shift_Del	DEL	G	G	-													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cagggcacggctaccatggaGgtgcagctgtcgcatgcgga							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464221	228464221	G	-	DEL	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_del	c.6291	p.V2098fs	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	11	0	0	5	18	78.26	-	-	-	-	228464221	G	-	228464221	7	5	199	1	0	1	0	1	0	0	0	0	10885	991	35	0	6373	0	OBSCN	1	228464221	Frame_Shift_Del	DEL	G	TCGA-A8-A08S-01A-11W-A050-09	25718051	228464221	20786400	5	12185	145	2	1	27		4	2	32	N	G_A_-	4.60632e-05
OBSCN	0	genome.wustl.edu	37	chr1	228464225	228464226	+	Frame_Shift_Ins	INS	-	-	G													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cacggctaccatggaggtgcINSagctgtcgcatgcggacgtg							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464225	228464226	-	G	INS	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_ins	c.6295_6296	p.Q2099fs	1.000:1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	11	0	0	3	19	86.36	-	-	-	G	228464226	-	G	228464225	7	5	199	1	0	1	1	0	0	0	0	0	10885	711	25	0	6377	0	OBSCN	1	228464225	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09	4	228464225	20786396	6	12186	145	2	1	27		4	2	32	N	G_A_-	4.60632e-05
OBSCN	0	genome.wustl.edu	37	chr1	228464249	228464250	+	Frame_Shift_Ins	INS	-	-	T													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gtcgcatgcggacgtggatgINSgcagctggactcgtgacggt							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464249	228464250	-	T	INS	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_ins	c.6319_6320	p.G2107fs	1.000:1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	14	0	0	6	18	75	-	-	-	T	228464250	-	T	228464249	7	5	199	1	0	1	1	0	0	0	0	0	10885	1348	47	0	6401	0	OBSCN	1	228464249	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09	24	228464249	20786372	7	12187	146	2	1	27		4	2	32	N	G_A_-	4.60632e-05
OBSCN	0	genome.wustl.edu	37	chr1	228464252	228464252	+	Frame_Shift_Del	DEL	A	A	-													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cgcatgcggacgtggatggcAgctggactcgtgacggtctg							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464252	228464252	A	-	DEL	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_del	c.6322	p.S2108fs	0.509	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	13	0	0	6	18	75	-	-	-	-	228464252	A	-	228464252	7	5	199	1	0	1	0	1	0	0	0	0	10885	188	7	0	6404	0	OBSCN	1	228464252	Frame_Shift_Del	DEL	A	TCGA-A8-A08S-01A-11W-A050-09	3	228464252	20786369	8	12188	146	2	1	27		4	2	32	N	G_A_-	4.60632e-05
TSGA10	0	genome.wustl.edu	37	chr2	99725408	99725408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gcatgcatttaagttcttcaCgatctcttgttgttgtcttc	7	9	4	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	99725408	99725408	C	T	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.98	p.R33H	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	128	0	0	67	21	23.86	-	-	-	T	99725408	C	T	99725408	3	4	199	1	0	0	0	0	1	0	0	0	16713	536	19	1	2058	1	TSGA10	2	99725408	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09		99725408	143473965	9	12189										
GALNT5	0	genome.wustl.edu	37	chr2	158115248	158115248	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gctgaaagggacttgaatgtGaccatcagtcttagtactga	11	7	2	4			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	158115248	158115248	G	A	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	silent	c.654	p.V218	0.043	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	101	0	0	49	37	43.02	-	-	-	A	158115248	G	A	158115248	2	1	199	1	0	0	0	0	0	0	0	1	6266	1277	45	2		2	GALNT5	2	158115248	Silent	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	58389840	158115248	85084125	10	12190										
C2orf47	0	genome.wustl.edu	37	chr2	200826596	200826596	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gaggagccagtgtattccagGttaagttggggaatcagaat	14	5	1	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	200826596	200826596	G	T	SNP	C2orf47	ENST00000295079	human	ensembl	69_37n	1	known	missense	c.742	p.V248F	1.000	NULL	NULL	-	no_errors	C2orf47	HGNC	ENSG00000162972	102	0	0	61	27	30.68	-	-	-	T	200826596	G	T	200826596	3	4	199	1	0	0	0	0	1	0	0	0	2189	1261	44	4	756	4	C2orf47	2	200826596	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	42711348	200826596	42372777	11	12191										
CISH	0	genome.wustl.edu	37	chr3	50645186	50645187	+	Frame_Shift_Ins	INS	-	-	G													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gcgtacaaagggctgcaccaINSgttttaggtgtacagcagtg							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	50645186	50645187	-	G	INS	CISH	ENST00000443053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.L227fs	1.000:1.000	pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	32	0	0	23	6	20.69	-	-	-	G	50645187	-	G	50645186	7	5	199	1	0	1	1	0	0	0	0	0	3467	188	7	0	151	0	CISH	3	50645186	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09		50645186	147377244	12	12192										
PHLDB2	0	genome.wustl.edu	37	chr3	111604184	111604184	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	agcagtattagctccatttcAggacgtgatgacctgatgga	11	8	1	3			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	111604184	111604184	A	G	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	silent	c.1260	p.S420	0.434	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	106	0	0	43	43	50	-	-	-	G	111604184	A	G	111604184	2	3	199	1	0	0	0	0	0	0	0	1	11926	175	7	5		5	PHLDB2	3	111604184	Silent	SNP	A	TCGA-A8-A08S-01A-11W-A050-09	60958998	111604184	86418246	13	12193										
ARAP2	0	genome.wustl.edu	37	chr4	36126581	36126581	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tttaattctttccttgtcatCttgcgtatctgaaggggaaa	8	7	4	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	36126581	36126581	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.3649	p.D1217Y	0.990	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	727	1	0.14	293	200	40.49	-	-	-	A	36126581	C	A	36126581	3	1	199	1	0	0	0	0	1	0	0	0	841	913	32	2	1513	2	ARAP2	4	36126581	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09		36126581	155027695	14	12194										
ABCG2	0	genome.wustl.edu	37	chr4	89018761	89018761	+	Splice_Site	DEL	T	T	-													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tctgcctttggcttcaatccTtagtcagaaagagaagaagt							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	89018761	89018761	T	-	DEL	ABCG2	ENST00000237612	human	ensembl	69_37n	-1	known	splice_site_del	c.1493-2	e12-2	0.954	-	-	-	no_errors	ABCG2	HGNC	ENSG00000118777	183	0	0	102	55	34.16	-	-	-	-	89018761	T	-	89018761	8	5	199	1	0	1	0	1	0	0	1	0	69	1623	56	0	492	0	ABCG2	4	89018761	Splice_Site	DEL	T	TCGA-A8-A08S-01A-11W-A050-09	52892180	89018761	102135515	15	12195										
EGR1	0	genome.wustl.edu	37	chr5	137801480	137801480	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gccaaggccgagatgcagctGatgtccccgctgcagatctc	12	14	1	3			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	5	137801480	137801480	G	A	SNP	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	silent	c.30	p.L10	1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	54	0	0	28	11	28.21	-	-	-	A	137801480	G	A	137801480	2	1	199	1	0	0	0	0	0	0	0	1	5006	1277	45	2		2	EGR1	5	137801480	Silent	SNP	G	TCGA-A8-A08S-01A-11W-A050-09		137801480	43113780	16	12196										
ATXN1	0	genome.wustl.edu	37	chr6	16328427	16328427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ccatgctgtgccctccacccGgtggttgtcgctgggcaggg	15	14	0	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	16328427	16328427	G	A	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.115	p.R39W	0.998	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	54	0	0	24	25	49.02	-	-	-	A	16328427	G	A	16328427	3	1	199	1	0	0	0	0	1	0	0	0	1213	1115	39	1	2340	1	ATXN1	6	16328427	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09		16328427	154786640	17	12197										
MAS1L	0	genome.wustl.edu	37	chr6	29454672	29454672	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	acctctggcttatctgctaaCgcccgttggagaatcactct	8	13	4	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	29454672	29454672	C	T	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	silent	c.1008	p.A336	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	129	0	0	122	34	21.66	-	-	-	T	29454672	C	T	29454672	2	4	199	1	0	0	0	0	0	0	0	1	9392	523	19	1		1	MAS1L	6	29454672	Silent	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	13126245	29454672	141660395	18	12198										
FLOT1	0	genome.wustl.edu	37	chr6	30698819	30698819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gcactgccacctgctgggccCgctccaccacctgcacctgc	9	21	0	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	30698819	30698819	C	T	SNP	FLOT1	ENST00000376389	human	ensembl	69_37n	-1	known	missense	c.782	p.R261Q	1.000	smart_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT1	HGNC	ENSG00000137312	66	0	0	50	15	23.08	-	-	-	T	30698819	C	T	30698819	3	4	199	1	0	0	0	0	1	0	0	0	5982	652	23	1	521	1	FLOT1	6	30698819	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	1244147	30698819	140416248	19	12199										
HTR1E	0	genome.wustl.edu	37	chr6	87726143	87726144	+	Frame_Shift_Ins	INS	-	-	T													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ctcattagatgccgagagcaINStacttagactgtaaaaagct							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	87726143	87726144	-	T	INS	HTR1E	ENST00000305344	human	ensembl	69_37n	1	known	frame_shift_ins	c.1091_1092	p.T365fs	1.000:0.102	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HTR1E	HGNC	ENSG00000168830	105	0	0	140	16	10.26	-	-	-	T	87726144	-	T	87726143	7	5	199	1	0	1	1	0	0	0	0	0	7493	217	8	0	1093	0	HTR1E	6	87726143	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09	57027324	87726143	83388924	20	12200										
EPPK1	0	genome.wustl.edu	37	chr8	144945362	144945363	+	Frame_Shift_Del	DEL	GC	GC	-													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ggtcagtgtagccagtgacaGcgcgctcagccgacagcagc							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	8	144945362	144945363	GC	-	DEL	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	frame_shift_del	c.2060_2059	p.A687fs	0.999:0.999	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	14	0	0	6	4	40	-	-	-	-	144945363	GC	-	144945362	7	5	199	1	0	1	0	1	0	0	0	0	5227	971	34	0	5206	0	EPPK1	8	144945362	Frame_Shift_Del	DEL	GC	TCGA-A8-A08S-01A-11W-A050-09		144945362	1418660	21	12201										
CPSF1	0	genome.wustl.edu	37	chr8	145625003	145625003	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cggcagcctcacggacagcaCtggccgggggctcctgcagc	15	16	1	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	8	145625003	145625003	C	A	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.1217	p.S406I	0.984	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	32	0	0	25	13	34.21	-	-	-	A	145625003	C	A	145625003	3	1	199	1	0	0	0	0	1	0	0	0	3854	565	20	4	3222	4	CPSF1	8	145625003	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	679641	145625003	739019	22	12202										
ZP1	0	genome.wustl.edu	37	chr11	60642669	60642669	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gacatcgtgagctctccgggGccagtgggctttgaggattc	15	10	1	2			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	60642669	60642669	G	T	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	silent	c.1722	p.G574	0.545	NULL	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	38	0	0	20	8	28.57	-	-	-	T	60642669	G	T	60642669	2	4	199	1	0	0	0	0	0	0	0	1	18308	1190	42	4		4	ZP1	11	60642669	Silent	SNP	G	TCGA-A8-A08S-01A-11W-A050-09		60642669	74363847	23	12203										
C11orf63	0	genome.wustl.edu	37	chr11	122774779	122774779	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tctgcctttggctcccctctAcccttcccaggagacgtcaa	7	17	3	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	122774779	122774779	A	C	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.491	p.Y164S	0.054	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	93	0	0	46	9	15.79	-	-	-	C	122774779	A	C	122774779	3	2	199	1	0	0	0	0	1	0	0	0	1665	391	14	5	497	5	C11orf63	11	122774779	Missense_Mutation	SNP	A	TCGA-A8-A08S-01A-11W-A050-09	62132110	122774779	12231737	24	12204										
CDK4	0	genome.wustl.edu	37	chr12	58144765	58144765	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	caggccaaagtcagccagctTgactgttccaccacttgtca	8	14	2	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	12	58144765	58144765	T	G	SNP	CDK4	ENST00000257904	human	ensembl	69_37n	-1	known	missense	c.463	p.K155Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK4	HGNC	ENSG00000135446	104	0	0	109	42	27.81	-	-	-	G	58144765	T	G	58144765	3	3	199	1	0	0	0	0	1	0	0	0	3170	1821	63	5	468	5	CDK4	12	58144765	Missense_Mutation	SNP	T	TCGA-A8-A08S-01A-11W-A050-09		58144765	75707130	25	12205										
TGM1	0	genome.wustl.edu	37	chr14	24727530	24727530	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tgtggcatccaccacctgccAcccatcaaagcccgagggca	9	17	1	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	14	24727530	24727530	A	C	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.1363	p.W455G	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	39	0	0	43	8	15.69	-	-	-	C	24727530	A	C	24727530	3	2	199	1	0	0	0	0	1	0	0	0	15924	159	6	5	1118	5	TGM1	14	24727530	Missense_Mutation	SNP	A	TCGA-A8-A08S-01A-11W-A050-09		24727530	82622010	26	12206										
ABCC6	0	genome.wustl.edu	37	chr16	16244574	16244574	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	agcctcgtccaggatgaggaTctgggtcttccggagaaggg	16	9	2	2			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	16	16244574	16244574	T	G	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.4264	p.I1422L	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	38	0	0	23	28	54.9	-	-	-	G	16244574	T	G	16244574	3	3	199	1	0	0	0	0	1	0	0	0	57	1435	50	5	255	5	ABCC6	16	16244574	Missense_Mutation	SNP	T	TCGA-A8-A08S-01A-11W-A050-09		16244574	74110179	27	12207										
SMCR8	0	genome.wustl.edu	37	chr17	18226154	18226154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gctccaaggccttcctctacAccttctgccaccacctgcac	5	20	2	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	18226154	18226154	A	C	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	missense	c.2584	p.T862P	0.994	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	67	0	0	26	4	13.33	-	-	-	C	18226154	A	C	18226154	3	2	199	1	0	0	0	0	1	0	0	0	14881	159	6	5	2590	5	SMCR8	17	18226154	Missense_Mutation	SNP	A	TCGA-A8-A08S-01A-11W-A050-09		18226154	62969056	28	12208										
SARM1	0	genome.wustl.edu	37	chr17	26708431	26708431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cgcgctgctgcgccactgcgCgctggcgctgggcaactgcg	16	16	0	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	26708431	26708431	C	T	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	missense	c.578	p.A193V	1.000	superfamily_ARM-type_fold	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	12	0	0	15	5	25	-	-	-	T	26708431	C	T	26708431	3	4	199	1	0	0	0	0	1	0	0	0	13929	768	27	1	684	1	SARM1	17	26708431	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	8482277	26708431	54486779	29	12209										
MPP3	0	genome.wustl.edu	37	chr17	41909250	41909250	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	agccggggggaggtacttacCagagtcctccgatagcactg	14	11	0	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	41909250	41909250	C	A	SNP	MPP3	ENST00000398389	human	ensembl	69_37n	-1	known	missense	c.25	p.G9C	0.983	pfscan_L27	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP3	HGNC	ENSG00000161647	48	0	0	26	16	38.1	-	-	-	A	41909250	C	A	41909250	3	1	199	1	0	0	0	0	1	0	0	0	9807	608	21	4	1804	4	MPP3	17	41909250	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	15200819	41909250	39285960	30	12210										
FZD2	0	genome.wustl.edu	37	chr17	42636265	42636265	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ctgctgagcggcgtgtgcttCgtaggcctcaacagcctgga	14	12	1	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	42636265	42636265	C	T	SNP	FZD2	ENST00000315323	human	ensembl	69_37n	1	known	silent	c.1209	p.F403	0.977	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD2	HGNC	ENSG00000180340	48	0	0	20	17	45.95	-	-	-	T	42636265	C	T	42636265	2	4	199	1	0	0	0	0	0	0	0	1	6179	883	31	1		1	FZD2	17	42636265	Silent	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	727015	42636265	38558945	31	12211										
NPC1	0	genome.wustl.edu	37	chr18	21114479	21114479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cctttcatgctcaccgtgaaCgctctggttatgtggctgca	10	12	3	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	18	21114479	21114479	C	T	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.2600	p.R867H	0.000	pfam_Patched,tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	111	0	0	60	24	28.57	-	-	-	T	21114479	C	T	21114479	3	4	199	1	0	0	0	0	1	0	0	0	10642	523	19	1	326	1	NPC1	18	21114479	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09		21114479	56962769	32	12212										
GPR108	0	genome.wustl.edu	37	chr19	6737533	6737534	+	Frame_Shift_Ins	INS	-	-	C													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	agcaccagaagtagccgctgINScccccactccgcggggctcc							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	6737533	6737534	-	C	INS	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	frame_shift_ins	c.55_54	p.Q18fs	0.246:0.396	NULL	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	19	0	0	1	2	66.67	-	-	-	C	6737534	-	C	6737533	7	5	199	1	0	1	1	0	0	0	0	0	6674	1328	46	0	1648	0	GPR108	19	6737533	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09		6737533	52391450	33	12213										
FBN3	0	genome.wustl.edu	37	chr19	8176051	8176051	+	Frame_Shift_Del	DEL	G	G	-													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tcacagaggtccacgttctcGgcacattcatccctgtctga							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	8176051	8176051	G	-	DEL	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_del	c.4101	p.E1368fs	0.042	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	181	0	0	68	21	23.33	-	-	-	-	8176051	G	-	8176051	7	5	199	1	0	1	0	1	0	0	0	0	5750	1103	39	0	4456	0	FBN3	19	8176051	Frame_Shift_Del	DEL	G	TCGA-A8-A08S-01A-11W-A050-09	1438518	8176051	50952932	34	12214										
SIN3B	0	genome.wustl.edu	37	chr19	16942408	16942408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ttcccctcggatatagaataGacattcccaagaatggcaag	8	10	0	3			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	16942408	16942408	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	missense	c.331	p.D111N	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	125	0	0	108	18	14.29	-	-	-	A	16942408	G	A	16942408	3	1	199	1	0	0	0	0	1	0	0	0	14415	942	33	2	341	2	SIN3B	19	16942408	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	8766357	16942408	42186575	35	12215										
GMIP	0	genome.wustl.edu	37	chr19	19746227	19746227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	attaacccaggccacacctcCtcacactccgtcccgctgac	5	20	1	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	19746227	19746227	C	T	SNP	GMIP	ENST00000593186	human	ensembl	69_37n	-1	novel	missense	c.788	p.R263K	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GMIP	HGNC	ENSG00000089639	111	0	0	47	27	36.49	-	-	-	T	19746227	C	T	19746227	3	4	199	1	0	0	0	0	1	0	0	0	6543	680	24	4	1383	4	GMIP	19	19746227	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	2803819	19746227	39382756	36	12216										
ZNF676	0	genome.wustl.edu	37	chr19	22363549	22363549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	aattctcttgtgttcagtaaGgcttgaggaccagctgaagg	12	7	2	2			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	22363549	22363549	G	A	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.970	p.L324F	0.561	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	68	0	0	37	31	45.59	-	-	-	A	22363549	G	A	22363549	3	1	199	1	0	0	0	0	1	0	0	0	18179	1000	35	4	800	4	ZNF676	19	22363549	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	2617322	22363549	36765434	37	12217										
AKT2	0	genome.wustl.edu	37	chr19	40761100	40761100	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tccacgtggaaggtcctctcGatgactgtggtccactgcag	12	12	1	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	40761100	40761100	G	A	SNP	AKT2	ENST00000391844	human	ensembl	69_37n	-1	known	nonsense	c.76	p.R26*	0.975	NULL	NULL	-	no_errors	AKT2	HGNC	ENSG00000105221	157	0	0	89	12	11.88	-	-	-	A	40761100	G	A	40761100	4	1	199	1	0	0	0	0	0	1	0	0	480	1048	37	1	1237	1	AKT2	19	40761100	Nonsense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	18397551	40761100	18367883	38	12218										
ERCC2	0	genome.wustl.edu	37	chr19	45868130	45868130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ggaagtatgggcaccagcccTggcgccgccccagggccttc	14	16	0	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	45868130	45868130	T	C	SNP	ERCC2	ENST00000391945	human	ensembl	69_37n	-1	known	missense	c.560	p.Q187R	1.000	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884	50	0	0	12	6	33.33	-	-	-	C	45868130	T	C	45868130	3	2	199	1	0	0	0	0	1	0	0	0	5250	1580	55	5	1847	5	ERCC2	19	45868130	Missense_Mutation	SNP	T	TCGA-A8-A08S-01A-11W-A050-09	5107030	45868130	13260853	39	12219										
ZNF615	0	genome.wustl.edu	37	chr19	52497121	52497121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	aaaagccttttccacattcaCtacatgtatataatttctct	2	10	2	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	52497121	52497121	C	T	SNP	ZNF615	ENST00000391795	human	ensembl	69_37n	-1	known	missense	c.1223	p.S408N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619	99	0	0	54	33	37.5	-	-	-	T	52497121	C	T	52497121	3	4	199	1	0	0	0	0	1	0	0	0	18136	565	20	4	991	4	ZNF615	19	52497121	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	6628991	52497121	6631862	40	12220										
PRKCG	0	genome.wustl.edu	37	chr19	54401815	54401816	+	Frame_Shift_Ins	INS	-	-	G													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	gagaaacgtgtgctggcgctINSggggggccggggtcctggcg							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	54401815	54401816	-	G	INS	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	frame_shift_ins	c.1214_1215	p.R408fs	0.999:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	33	0	0	11	2	15.38	-	-	-	G	54401816	-	G	54401815	7	5	199	1	0	1	1	0	0	0	0	0	12593	1580	55	0	1256	0	PRKCG	19	54401815	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09	1904694	54401815	4727168	41	12221										
NLRP2	0	genome.wustl.edu	37	chr19	55494133	55494133	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ggagccgatctacataagggTggagggcttcctggaggagg	18	7	1	0			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	55494133	55494133	T	G	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	missense	c.1067	p.V356G	0.030	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	32	0	0	26	5	16.13	-	-	-	G	55494133	T	G	55494133	3	3	199	1	0	0	0	0	1	0	0	0	10549	1696	59	5	1085	5	NLRP2	19	55494133	Missense_Mutation	SNP	T	TCGA-A8-A08S-01A-11W-A050-09	1092318	55494133	3634850	42	12222										
PTGIS	0	genome.wustl.edu	37	chr20	48160880	48160881	+	Frame_Shift_Ins	INS	-	-	TG													0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	agaagtcgaggagacccatcINStcgtgccagccactgcctgc							TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	48160880	48160881	-	TG	INS	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	frame_shift_ins	c.483_482	p.E161fs	0.496:0.591	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	77	0	0	63	110	63.58	-	-	-	TG	48160881	-	TG	48160880	7	5	199	1	0	1	1	0	0	0	0	0	12833	912	32	0	1047	0	PTGIS	20	48160880	Frame_Shift_Ins	INS	-	TCGA-A8-A08S-01A-11W-A050-09		48160880	14864640	43	12223										
CDH26	0	genome.wustl.edu	37	chr20	58547144	58547144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	cggaaggatatatgttcaccGccctgtcgatcgagaaatga	11	9	1	2			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	58547144	58547144	G	A	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.359	p.R120H	0.019	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	165	1	0.6	115	92	44.44	-	-	-	A	58547144	G	A	58547144	3	1	199	1	0	0	0	0	1	0	0	0	3139	1087	38	1	373	1	CDH26	20	58547144	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	10386264	58547144	4478376	44	12224										
PRPF6	0	genome.wustl.edu	37	chr20	62655955	62655955	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ggctgtggcccactgccccaAagcagaggtgctgtggctca	14	13	1	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	62655955	62655955	A	G	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.1817	p.K606R	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	18	0	0	12	15	55.56	-	-	-	G	62655955	A	G	62655955	3	3	199	1	0	0	0	0	1	0	0	0	12655	14	1	5	1871	5	PRPF6	20	62655955	Missense_Mutation	SNP	A	TCGA-A8-A08S-01A-11W-A050-09	4108811	62655955	369565	45	12225										
WWC3	0	genome.wustl.edu	37	chrX	10106889	10106889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	ctgcggcagcggttggaggaCgcccagctccgtggccagac	16	14	0	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	10106889	10106889	C	T	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	silent	c.2997	p.D999	0.921	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	40	0	0	24	12	33.33	-	-	-	T	10106889	C	T	10106889	2	4	199	1	0	0	0	0	0	0	0	1	17510	535	19	1		1	WWC3	23	10106889	Silent	SNP	C	TCGA-A8-A08S-01A-11W-A050-09		10106889	145163671	46	12226										
FRMPD4	0	genome.wustl.edu	37	chrX	12735775	12735775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tggccactcacgaaggctacCacccccttgcagaagagcag	10	15	1	2			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	12735775	12735775	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.2830	p.H944Y	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	91	0	0	46	25	35.21	-	-	-	T	12735775	C	T	12735775	3	4	199	1	0	0	0	0	1	0	0	0	6108	594	21	4	2892	4	FRMPD4	23	12735775	Missense_Mutation	SNP	C	TCGA-A8-A08S-01A-11W-A050-09	2628886	12735775	142534785	47	12227										
MAGEB6	0	genome.wustl.edu	37	chrX	26212915	26212915	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0652173913043478	3	0.769623785034981	1.29968944099379	NA	1.29968944099379	0.166666666666667	0.696581196581198	0	tgggtctgttggggatatatGatgggatcctgcattcaatc	13	6	2	1			TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	26212915	26212915	G	T	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.952	p.D318Y	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	264	0	0	154	96	38.4	-	-	-	T	26212915	G	T	26212915	3	4	199	1	0	0	0	0	1	0	0	0	9250	1290	45	2	954	2	MAGEB6	23	26212915	Missense_Mutation	SNP	G	TCGA-A8-A08S-01A-11W-A050-09	13477140	26212915	129057645	48	12228										
JAK1	0	genome.wustl.edu	37	chr1	65301180	65301180	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	atgggttgggcctatcatttTcaggaacaactatataaaat	8	6	2	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	1	65301180	65301180	T	G	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.3268	p.K1090Q	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	244	0	0	150	80	34.78	-	-	-	G	65301180	T	G	65301180	3	3	200	1	0	0	0	0	1	0	0	0	7991	1792	62	5	204	5	JAK1	1	65301180	Missense_Mutation	SNP	T	TCGA-A8-A08T-01A-21W-A019-09		65301180	183949441	1	12229										
NBPF9	0	genome.wustl.edu	37	chr1	144827878	144827879	+	In_Frame_Ins	INS	-	-	AGG													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gaagatcaaagaaggaaagaINSagaaggggaagaaaagaagg							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	1	144827878	144827879	-	AGG	INS	NBPF9	ENST00000375552	human	ensembl	69_37n	1	known	in_frame_ins	c.1757_1758	p.587in_frame_insG	0.025:0.025	NULL	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF9	HGNC	ENSG00000168614	25	0	0	44	6	12	-	-	-	AGG	144827879	-	AGG	144827878	7	5	200	1	0	1	1	0	0	0	0	0	10271	243	9	0	2607	0	NBPF9	1	144827878	In_Frame_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09	79526698	144827878	104422743	2	12230										
INSRR	0	genome.wustl.edu	37	chr1	156814052	156814053	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gcagtgaggaggacatgcagINSccccccagcatcctcctcct							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	1	156814052	156814053	-	C	INS	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2758_2757	p.L919fs	0.075:0.002	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	46	0	0	15	2	11.76	-	-	-	C	156814053	-	C	156814052	7	5	200	1	0	1	1	0	0	0	0	0	7828	962	34	0	1166	0	INSRR	1	156814052	Frame_Shift_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09	11986174	156814052	92436569	3	12231										
KCNT2	0	genome.wustl.edu	37	chr1	196311258	196311258	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aaaactctttccttcatattCagcaaaaaatgtactttctt	2	9	4	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	1	196311258	196311258	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1504	p.E502K	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	159	0	0	227	32	12.36	-	-	-	T	196311258	C	T	196311258	3	4	200	1	0	0	0	0	1	0	0	0	8146	835	29	2	1959	2	KCNT2	1	196311258	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	39497206	196311258	52939363	4	12232										
HADHB	0	genome.wustl.edu	37	chr2	26505908	26505908	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tctcaggatccaaaagatcaActattacttgggtaggtagc	9	8	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	2	26505908	26505908	A	T	SNP	HADHB	ENST00000317799	human	ensembl	69_37n	1	known	missense	c.1050	p.Q350H	0.999	pfam_Thiolase_C,superfamily_Thiolase-like,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,tigrfam_Thiolase	-	no_errors	HADHB	HGNC	ENSG00000138029	196	0	0	153	59	27.83	-	-	-	T	26505908	A	T	26505908	3	4	200	1	0	0	0	0	1	0	0	0	6995	40	2	5	1092	5	HADHB	2	26505908	Missense_Mutation	SNP	A	TCGA-A8-A08T-01A-21W-A019-09		26505908	216693465	5	12233										
CCDC85A	0	genome.wustl.edu	37	chr2	56419808	56419808	+	Frame_Shift_Del	DEL	T	T	-													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ggaggtgaagcaggaggaagTggtgaaggagaacatggagc							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	2	56419808	56419808	T	-	DEL	CCDC85A	ENST00000407595	human	ensembl	69_37n	1	known	frame_shift_del	c.473	p.V158fs	1.000	pfam_DUF2216_coiled-coil	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813	96	0	0	71	117	61.9	-	-	-	-	56419808	T	-	56419808	7	5	200	1	0	1	0	1	0	0	0	0	2886	1696	59	0	479	0	CCDC85A	2	56419808	Frame_Shift_Del	DEL	T	TCGA-A8-A08T-01A-21W-A019-09	29913900	56419808	186779565	6	12234	147	2								
CCDC85A	0	genome.wustl.edu	37	chr2	56419810	56419811	+	Frame_Shift_Del	DEL	GT	GT	-													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aggtgaagcaggaggaagtgGtgaaggagaacatggagctc							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	2	56419810	56419811	GT	-	DEL	CCDC85A	ENST00000407595	human	ensembl	69_37n	1	known	frame_shift_del	c.475_476	p.V159fs	1.000:1.000	pfam_DUF2216_coiled-coil	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813	95	0	0	84	117	58.21	-	-	-	-	56419811	GT	-	56419810	7	5	200	1	0	1	0	1	0	0	0	0	2886	1261	44	0	481	0	CCDC85A	2	56419810	Frame_Shift_Del	DEL	GT	TCGA-A8-A08T-01A-21W-A019-09	2	56419810	186779563	7	12235	147	2								
RAB11FIP5	0	genome.wustl.edu	37	chr2	73316121	73316121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cagggtgctgtccgagcccaGcgaggtgttggactgggtca	17	10	1	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	2	73316121	73316121	G	A	SNP	RAB11FIP5	ENST00000258098	human	ensembl	69_37n	-1	known	silent	c.754	p.L252	0.967	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	49	0	0	17	16	48.48	-	-	-	A	73316121	G	A	73316121	2	1	200	1	0	0	0	0	0	0	0	1	12980	962	34	4		4	RAB11FIP5	2	73316121	Silent	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	16896311	73316121	169883252	8	12236										
CHPF	0	genome.wustl.edu	37	chr2	220404537	220404537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aaggcctgccagccggagatGgcatgcatgcggcagcggtt	16	11	0	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	2	220404537	220404537	G	A	SNP	CHPF	ENST00000243776	human	ensembl	69_37n	-1	known	silent	c.1896	p.A632	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989	93	0	0	26	15	36.59	-	-	-	A	220404537	G	A	220404537	2	1	200	1	0	0	0	0	0	0	0	1	3397	1335	47	4		4	CHPF	2	220404537	Silent	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	147088416	220404537	22794836	9	12237										
VILL	0	genome.wustl.edu	37	chr3	38039624	38039625	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ggtggtcctggagttggcgaINScccccccactgacccaggac							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	3	38039624	38039625	-	C	INS	VILL	ENST00000283713	human	ensembl	69_37n	1	known	frame_shift_ins	c.808_809	p.L273fs	0.589:0.638	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	9	0	0	4	2	33.33	-	-	-	C	38039625	-	C	38039624	7	5	200	1	0	1	1	0	0	0	0	0	17262	275	10	0	834	0	VILL	3	38039624	Frame_Shift_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09		38039624	159982806	10	12238										
C3orf71	0	genome.wustl.edu	37	chr3	48956169	48956169	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tgggtcagagcgctaagtttCaaggaggcggcgctaaacag	15	8	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	3	48956169	48956169	C	G	SNP	C3orf71	ENST00000408959	human	ensembl	69_37n	-1	known	missense	c.414	p.L138F	0.000	NULL	NULL	-	no_errors	C3orf71	HGNC	ENSG00000221883	21	0	0	7	6	46.15	-	-	-	G	48956169	C	G	48956169	3	3	200	1	0	0	0	0	1	0	0	0	2263	825	29	2	462	2	C3orf71	3	48956169	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	10916545	48956169	149066261	11	12239										
CACNA1D	0	genome.wustl.edu	37	chr3	53842707	53842707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tcctccttcaactttgagtgCctgcgccggcagagcagcca	10	15	1	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	3	53842707	53842707	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	silent	c.5841	p.C1947	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	24	0	0	22	14	38.89	-	-	-	T	53842707	C	T	53842707	2	4	200	1	0	0	0	0	0	0	0	1	2566	747	26	4		4	CACNA1D	3	53842707	Silent	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	4886538	53842707	144179723	12	12240										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	113	0	0	82	45	35.43	-	-	-	A	178936091	G	A	178936091	3	1	200	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	125093384	178936091	19086339	13	12241										
ZNF639	0	genome.wustl.edu	37	chr3	179051631	179051631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cacctctattggtgtgaacaGtgtgatgtacagttctcctc	9	10	2	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	3	179051631	179051631	G	T	SNP	ZNF639	ENST00000326361	human	ensembl	69_37n	1	known	missense	c.879	p.Q293H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864	125	0	0	94	51	35.17	-	-	-	T	179051631	G	T	179051631	3	4	200	1	0	0	0	0	1	0	0	0	18152	1020	36	4	893	4	ZNF639	3	179051631	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	115540	179051631	18970799	14	12242										
POU4F2	0	genome.wustl.edu	37	chr4	147561836	147561836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ctactttgccattcagcctcGgccctcctctgaaaagatcg	7	15	2	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	4	147561836	147561836	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.1106	p.R369Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	148	1	0.67	59	20	25.32	-	-	-	A	147561836	G	A	147561836	3	1	200	1	0	0	0	0	1	0	0	0	12352	1116	39	1	1112	1	POU4F2	4	147561836	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		147561836	43592440	15	12243										
CTNND2	0	genome.wustl.edu	37	chr5	11346597	11346597	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	acagagggacaatactgcagCtgtcggtaggggtccgcgta	15	9	0	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	5	11346597	11346597	C	A	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.1515	p.Q505H	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	39	0	0	35	23	39.66	-	-	-	A	11346597	C	A	11346597	3	1	200	1	0	0	0	0	1	0	0	0	4052	796	28	4	2218	4	CTNND2	5	11346597	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		11346597	169568663	16	12244										
PPARGC1B	0	genome.wustl.edu	37	chr5	149212267	149212267	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ccatgatgcagtctcagagcCgaagttgtacagaactacat	9	10	1	3			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	5	149212267	149212267	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	69_37n	1	known	nonsense	c.631	p.R211*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	115	0	0	90	11	10.89	-	-	-	T	149212267	C	T	149212267	4	4	200	1	0	0	0	0	0	1	0	0	12374	644	23	1	656	1	PPARGC1B	5	149212267	Nonsense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	137865670	149212267	31702993	17	12245										
PMS2	0	genome.wustl.edu	37	chr7	6031635	6031635	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gaaatgttaagaacaacaaaTggatactggtgtcgattata	9	4	0	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	7	6031635	6031635	T	C	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	silent	c.957	p.P319	0.966	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	47	0	0	65	20	23.53	-	-	-	C	6031635	T	C	6031635	2	2	200	1	0	0	0	0	0	0	0	1	12217	1451	51	5		5	PMS2	7	6031635	Silent	SNP	T	TCGA-A8-A08T-01A-21W-A019-09		6031635	153107028	18	12246										
ANK1	0	genome.wustl.edu	37	chr8	41552742	41552742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ccaggtagctctctccatagCggctcctgtgctccttccac	8	17	1	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	8	41552742	41552742	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.3068	p.R1023H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	53	0	0	25	16	39.02	-	-	-	T	41552742	C	T	41552742	3	4	200	1	0	0	0	0	1	0	0	0	620	768	27	1	2967	1	ANK1	8	41552742	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		41552742	104811280	19	12247										
C9orf129	0	genome.wustl.edu	37	chr9	96097916	96097916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tatggaccctggcccggggcGccccctgggctgggcacctg	16	16	0	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	9	96097916	96097916	G	A	SNP	C9orf129	ENST00000375419	human	ensembl	69_37n	-1	known	silent	c.105	p.G35	0.631	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352	8	0	0	2	9	81.82	-	-	-	A	96097916	G	A	96097916	2	1	200	1	0	0	0	0	0	0	0	1	2481	1074	38	1		1	C9orf129	9	96097916	Silent	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		96097916	45115515	20	12248										
PRPF4	0	genome.wustl.edu	37	chr9	116050502	116050502	+	Frame_Shift_Del	DEL	G	G	-													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ccatacagtgcgtgtggcgcGggtaatgtggcatccttcag							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	9	116050502	116050502	G	-	DEL	PRPF4	ENST00000374198	human	ensembl	69_37n	1	known	frame_shift_del	c.983	p.V329fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875	68	0	0	52	26	32.91	-	-	-	-	116050502	G	-	116050502	7	5	200	1	0	1	0	1	0	0	0	0	12651	1116	39	0	1021	0	PRPF4	9	116050502	Frame_Shift_Del	DEL	G	TCGA-A8-A08T-01A-21W-A019-09	19952586	116050502	25162929	21	12249										
ANKRD26	0	genome.wustl.edu	37	chr10	27326874	27326874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cagttcaagctgttgtttcaCttcaacttctttcctatatt	4	10	4	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	10	27326874	27326874	C	T	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.2533	p.V845M	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	133	0	0	103	34	24.82	-	-	-	T	27326874	C	T	27326874	3	4	200	1	0	0	0	0	1	0	0	0	654	565	20	4	2699	4	ANKRD26	10	27326874	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		27326874	108207873	22	12250										
PDZD8	0	genome.wustl.edu	37	chr10	119043132	119043132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ctgtagcttatccaacatgaActctagtttctggatccttt	6	10	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	10	119043132	119043132	A	G	SNP	PDZD8	ENST00000334464	human	ensembl	69_37n	-1	known	missense	c.3112	p.F1038L	1.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650	370	0	0	233	107	31.47	-	-	-	G	119043132	A	G	119043132	3	3	200	1	0	0	0	0	1	0	0	0	11778	43	2	5	356	5	PDZD8	10	119043132	Missense_Mutation	SNP	A	TCGA-A8-A08T-01A-21W-A019-09	91716258	119043132	16491615	23	12251										
LUZP2	0	genome.wustl.edu	37	chr11	25098915	25098915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gaagcacaaagaaagtccccCaagtaatgccactgcagaaa	8	11	0	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	11	25098915	25098915	C	T	SNP	LUZP2	ENST00000336930	human	ensembl	69_37n	1	known	missense	c.899	p.P300L	0.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	472	0	0	392	196	33.33	-	-	-	T	25098915	C	T	25098915	3	4	200	1	0	0	0	0	1	0	0	0	9153	594	21	4	941	4	LUZP2	11	25098915	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		25098915	109907601	24	12252										
DNAJC4	0	genome.wustl.edu	37	chr11	64000185	64000186	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ctcccagcagctcctggacaINSccccccaacgcacagtactg							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	11	64000185	64000186	-	C	INS	DNAJC4	ENST00000321685	human	ensembl	69_37n	1	known	frame_shift_ins	c.375_376	p.N127fs	0.001:0.002	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC4	HGNC	ENSG00000110011	38	0	0	9	2	18.18	-	-	-	C	64000186	-	C	64000185	7	5	200	1	0	1	1	0	0	0	0	0	4684	146	6	0	389	0	DNAJC4	11	64000185	Frame_Shift_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09	38901270	64000185	71006331	25	12253										
GPR137	0	genome.wustl.edu	37	chr11	64055630	64055631	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cctgacagcactggccttggINSccccccagagccggctggac							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	11	64055630	64055631	-	C	INS	GPR137	ENST00000313074	human	ensembl	69_37n	1	known	frame_shift_ins	c.727_728	p.Q245fs	1.000:1.000	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264	26	0	0	5	2	28.57	-	-	-	C	64055631	-	C	64055630	7	5	200	1	0	1	1	0	0	0	0	0	6695	1203	42	0	923	0	GPR137	11	64055630	Frame_Shift_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09	55445	64055630	70950886	26	12254										
PCF11	0	genome.wustl.edu	37	chr11	82877733	82877733	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aagtctgccaaaagatggaaAtctggttgggaagaaaataa	11	4	2	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	11	82877733	82877733	A	G	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	silent	c.1794	p.K598	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	209	0	0	171	99	36.53	-	-	-	G	82877733	A	G	82877733	2	3	200	1	0	0	0	0	0	0	0	1	11646	98	4	5		5	PCF11	11	82877733	Silent	SNP	A	TCGA-A8-A08T-01A-21W-A019-09	18822103	82877733	52128783	27	12255										
C11orf88	0	genome.wustl.edu	37	chr11	111385565	111385566	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aaagagtcccaggaaatgtgINSccccccgggattactggtat							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	11	111385565	111385566	-	C	INS	C11orf88	ENST00000529167	human	ensembl	69_37n	1	known	frame_shift_ins	c.56_57	p.G23fs	0.000:0.000	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644	38	0	0	12	3	20	-	-	-	C	111385566	-	C	111385565	7	5	200	1	0	1	1	0	0	0	0	0	1681	1319	46	0	58	0	C11orf88	11	111385565	Frame_Shift_Ins	INS	-	TCGA-A8-A08T-01A-21W-A019-09	28507832	111385565	23620951	28	12256										
ACVR1B	0	genome.wustl.edu	37	chr12	52387803	52387803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ggggaagatgatgcgagagtGttggtatgccaacggcgcag	18	6	0	3			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	12	52387803	52387803	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	missense	c.1427	p.C476Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	106	0	0	35	44	55.7	-	-	-	A	52387803	G	A	52387803	3	1	200	1	0	0	0	0	1	0	0	0	221	1377	48	4	1588	4	ACVR1B	12	52387803	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		52387803	81464092	29	12257										
TOX4	0	genome.wustl.edu	37	chr14	21961324	21961324	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	caactgtggaaagtagtcctGagcggcctatgaacaacagc	11	10	0	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	14	21961324	21961324	G	T	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	nonsense	c.1549	p.E517*	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	131	0	0	103	73	41.48	-	-	-	T	21961324	G	T	21961324	4	4	200	1	0	0	0	0	0	1	0	0	16476	1291	45	2	1575	2	TOX4	14	21961324	Nonsense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		21961324	85388216	30	12258										
AHNAK2	0	genome.wustl.edu	37	chr14	105420635	105420635	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ctgagcaggcatcacttctcGatcctgttctgccctctcct	7	16	4	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	14	105420635	105420635	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	nonsense	c.1153	p.R385*	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	26	0	0	27	11	28.95	-	-	-	A	105420635	G	A	105420635	4	1	200	1	0	0	0	0	0	1	0	0	415	1066	37	1	16238	1	AHNAK2	14	105420635	Nonsense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	83459311	105420635	1928905	31	12259										
CBFB	0	genome.wustl.edu	37	chr16	67070595	67070595	+	Nonsense_Mutation	SNP	G	G	A													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cagttttttccggccagctgGcagggagaacagcgacaaac							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	16	67070595	67070595	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	nonsense	c.219	p.W73*	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	119	0	0	27	44	61.97	-	-	-	A	67070595	G	A	67070595	4	1	200	1	0	0	0	0	0	1	0	0	2724	1212	42	4	229	4	CBFB	16	67070595	Nonsense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		67070595	23284158	32	12260	148	2								
CBFB	0	genome.wustl.edu	37	chr16	67070596	67070596	+	Missense_Mutation	SNP	C	C	A													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	agttttttccggccagctggCagggagaacagcgacaaaca							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	16	67070596	67070596	C	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.220	p.Q74K	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	123	0	0	26	43	62.32	-	-	-	A	67070596	C	A	67070596	3	1	200	1	0	0	0	0	1	0	0	0	2724	711	25	4	230	4	CBFB	16	67070596	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	1	67070596	23284157	33	12261	148	2								
PSMA8	0	genome.wustl.edu	37	chr18	23731889	23731889	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tgccagagccataagcttacGgttgaggacccagtcactgt	11	11	1	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	18	23731889	23731889	G	T	SNP	PSMA8	ENST00000308268	human	ensembl	69_37n	1	known	silent	c.315	p.T105	0.913	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611	151	0	0	239	66	21.57	-	-	-	T	23731889	G	T	23731889	2	4	200	1	0	0	0	0	0	0	0	1	12753	1103	39	3		3	PSMA8	18	23731889	Silent	SNP	G	TCGA-A8-A08T-01A-21W-A019-09		23731889	54345359	34	12262										
SHD	0	genome.wustl.edu	37	chr19	4283129	4283129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gacagcagatggacccccttCtgggcagaagcctcggcaga	13	13	1	3			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	19	4283129	4283129	C	T	SNP	SHD	ENST00000543264	human	ensembl	69_37n	1	known	missense	c.482	p.S161F	0.001	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHD	HGNC	ENSG00000105251	35	0	0	20	11	35.48	-	-	-	T	4283129	C	T	4283129	3	4	200	1	0	0	0	0	1	0	0	0	14364	913	32	2	492	2	SHD	19	4283129	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		4283129	54845854	35	12263										
HAUS8	0	genome.wustl.edu	37	chr19	17169452	17169452	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	tttttctgtagcttctccttCtccttacacattattaataa	2	10	3	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	19	17169452	17169452	C	G	SNP	HAUS8	ENST00000253669	human	ensembl	69_37n	-1	known	missense	c.552	p.E184D	0.056	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351	139	0	0	105	32	23.36	-	-	-	G	17169452	C	G	17169452	3	3	200	1	0	0	0	0	1	0	0	0	7023	912	32	2	696	2	HAUS8	19	17169452	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	12886323	17169452	41959531	36	12264										
LILRA3	0	genome.wustl.edu	37	chr19	54802507	54802507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gatcaggatgtccagggggtCgctgggggccgaccactcgg	18	11	1	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	19	54802507	54802507	C	T	SNP	LILRA3	ENST00000251390	human	ensembl	69_37n	-1	known	missense	c.934	p.D312N	0.038	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA3	HGNC	ENSG00000170866	59	0	0	23	14	37.84	-	-	-	T	54802507	C	T	54802507	3	4	200	1	0	0	0	0	1	0	0	0	8841	884	31	1	397	1	LILRA3	19	54802507	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	37633055	54802507	4326476	37	12265										
NCOA3	0	genome.wustl.edu	37	chr20	46264773	46264773	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gtcatcaccaggccccaaatTggataactctcccaatatga	6	13	3	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	20	46264773	46264773	T	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.1643	p.L548W	0.999	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	219	1	0.45	180	90	33.33	-	-	-	G	46264773	T	G	46264773	3	3	200	1	0	0	0	0	1	0	0	0	10302	1821	63	5	1711	5	NCOA3	20	46264773	Missense_Mutation	SNP	T	TCGA-A8-A08T-01A-21W-A019-09		46264773	16760747	38	12266										
APOL1	0	genome.wustl.edu	37	chr22	36661744	36661744	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	aggacatccgtgccctcagaCgagccagagccaatcttcag	10	14	3	2			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	22	36661744	36661744	C	T	SNP	APOL1	ENST00000319136	human	ensembl	69_37n	1	known	nonsense	c.910	p.R304*	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL1	HGNC	ENSG00000100342	135	0	0	90	50	35.71	-	-	-	T	36661744	C	T	36661744	4	4	200	1	0	0	0	0	0	1	0	0	807	528	19	1	932	1	APOL1	22	36661744	Nonsense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		36661744	14642822	39	12267										
TCF20	0	genome.wustl.edu	37	chr22	42609296	42609298	+	In_Frame_Del	DEL	GTT	GTT	-													0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ccttctccattatggttggaGttgttatcgccattcttgtt							TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	22	42609296	42609298	GTT	-	DEL	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	in_frame_del	c.2016_2014	p.N672in_frame_del	0.563:0.551:0.499	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	341	0	0	285	56	16.42	-	-	-	-	42609298	GTT	-	42609296	7	5	200	1	0	1	0	1	0	0	0	0	15785	1020	36	0	3904	0	TCF20	22	42609296	In_Frame_Del	DEL	GTT	TCGA-A8-A08T-01A-21W-A019-09	5947552	42609296	8695270	40	12268										
NHS	0	genome.wustl.edu	37	chrX	17745318	17745318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	ctattcaagccagtctgaaaCgccaacatcctctttcccta	4	15	3	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	17745318	17745318	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.3029	p.T1010M	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	581	0	0	498	134	21.17	-	-	-	T	17745318	C	T	17745318	3	4	200	1	0	0	0	0	1	0	0	0	10483	536	19	1	3156	1	NHS	23	17745318	Missense_Mutation	SNP	C	TCGA-A8-A08T-01A-21W-A019-09		17745318	137525242	41	12269										
HDAC6	0	genome.wustl.edu	37	chrX	48672895	48672895	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gagcagggtaggttctggccCcacctgaaggcctctaactg	13	12	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	48672895	48672895	C	T	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	silent	c.897	p.P299	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	146	0	0	83	39	31.97	-	-	-	T	48672895	C	T	48672895	2	4	200	1	0	0	0	0	0	0	0	1	7062	610	22	4		4	HDAC6	23	48672895	Silent	SNP	C	TCGA-A8-A08T-01A-21W-A019-09	30927577	48672895	106597665	42	12270										
OPHN1	0	genome.wustl.edu	37	chrX	67339171	67339171	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	caacatctcctgggcatttaGgatctatttgagaaaagtaa	8	7	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	67339171	67339171	G	C	SNP	OPHN1	ENST00000355520	human	ensembl	69_37n	-1	known	missense	c.1280	p.P427R	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	132	0	0	87	68	43.87	-	-	-	C	67339171	G	C	67339171	3	2	200	1	0	0	0	0	1	0	0	0	10948	1000	35	4	1164	4	OPHN1	23	67339171	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	18666276	67339171	87931389	43	12271										
BRWD3	0	genome.wustl.edu	37	chrX	79932420	79932420	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cccctagtgccacctccaccTcttcctcgactccctcgtcc	4	23	1	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	79932420	79932420	T	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.5097	p.R1699S	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	297	0	0	389	113	22.38	-	-	-	A	79932420	T	A	79932420	3	1	200	1	0	0	0	0	1	0	0	0	1534	1548	54	5	315	5	BRWD3	23	79932420	Missense_Mutation	SNP	T	TCGA-A8-A08T-01A-21W-A019-09	12593249	79932420	75338140	44	12272										
DACH2	0	genome.wustl.edu	37	chrX	86071092	86071092	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	gggactcctcatgatagtgcTgctatgcaaggtacagtcaa	11	9	2	1			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	86071092	86071092	T	C	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	silent	c.1740	p.A580	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	76	0	0	74	33	30.84	-	-	-	C	86071092	T	C	86071092	2	2	200	1	0	0	0	0	0	0	0	1	4253	1567	55	5		5	DACH2	23	86071092	Silent	SNP	T	TCGA-A8-A08T-01A-21W-A019-09	6138672	86071092	69199468	45	12273										
PCDH19	0	genome.wustl.edu	37	chrX	99657715	99657715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	caaaatagttgagggaggagGtcagggaagagcaactgaca	15	5	1	3			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	99657715	99657715	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.2423	p.T808I	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	46	0	0	24	17	41.46	-	-	-	A	99657715	G	A	99657715	3	1	200	1	0	0	0	0	1	0	0	0	11587	1261	44	4	1039	4	PCDH19	23	99657715	Missense_Mutation	SNP	G	TCGA-A8-A08T-01A-21W-A019-09	13586623	99657715	55612845	46	12274										
G6PD	0	genome.wustl.edu	37	chrX	153761953	153761953	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	5	0.479717513739179	1.62210338680927	4.75816993464052	1.12693498452012	1	1	0	cctggttcaagggcatggggAccccaaacaaggcttcctag	12	12	1	0			TCGA-A8-A08T-01A-21W-A019-09	TCGA-A8-A08T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e	84831f09-08af-4e3c-93a5-49b058ab40d5	X	153761953	153761953	A	T	SNP	G6PD	ENST00000369620	human	ensembl	69_37n	-1	known	silent	c.840	p.G280	0.000	pirsf_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211	14	0	0	5	8	61.54	-	-	-	T	153761953	A	T	153761953	2	4	200	1	0	0	0	0	0	0	0	1	6195	290	10	5		5	G6PD	23	153761953	Silent	SNP	A	TCGA-A8-A08T-01A-21W-A019-09	54104238	153761953	1508607	47	12275										
FCRL1	0	genome.wustl.edu	37	chr1	157773658	157773658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	gcacatttatctgggatctcCtgctcctcaagactttggac	8	12	3	1			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	1	157773658	157773658	C	T	SNP	FCRL1	ENST00000368176	human	ensembl	69_37n	-1	known	missense	c.296	p.R99K	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL1	HGNC	ENSG00000163534	168	0	0	166	63	27.51	-	-	-	T	157773658	C	T	157773658	3	4	201	1	0	0	0	0	1	0	0	0	5840	681	24	4	1095	4	FCRL1	1	157773658	Missense_Mutation	SNP	C	TCGA-A8-A08X-01A-21W-A019-09		157773658	91476963	1	12276										
TET3	0	genome.wustl.edu	37	chr2	74275539	74275539	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ccccacctgcgattgcgtcgGtaagtccgcctgggtatcag	12	14	1	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	2	74275539	74275539	G	A	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	splice_site	c.2089+1	e1+1	1.000	-	-	-	no_errors	TET3	HGNC	ENSG00000187605	39	0	0	40	6	13.04	-	-	-	A	74275539	G	A	74275539	5	1	201	1	0	0	0	0	0	0	1	0	15866	1275	44	4	2092	4	TET3	2	74275539	Splice_Site	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		74275539	168923834	2	12277										
STAP1	0	genome.wustl.edu	37	chr4	68449419	68449419	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	tcactattcggcaggagataGagtatgtttattttttttaa	8	4	1	2			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	4	68449419	68449419	G	C	SNP	STAP1	ENST00000265404	human	ensembl	69_37n	1	known	missense	c.658	p.D220H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	STAP1	HGNC	ENSG00000035720	59	0	0	20	8	28.57	-	-	-	C	68449419	G	C	68449419	3	2	201	1	0	0	0	0	1	0	0	0	15343	956	33	2	680	2	STAP1	4	68449419	Missense_Mutation	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		68449419	122704857	3	12278										
MAN2A1	0	genome.wustl.edu	37	chr5	109091135	109091135	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	gatcaactaattgaaggacaTcagtggctggaaaataatat	9	5	2	1			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	5	109091135	109091135	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	silent	c.813	p.H271	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	275	0	0	125	35	21.88	-	-	-	C	109091135	T	C	109091135	2	2	201	1	0	0	0	0	0	0	0	1	9285	1432	50	5		5	MAN2A1	5	109091135	Silent	SNP	T	TCGA-A8-A08X-01A-21W-A019-09		109091135	71824125	4	12279										
SERPINE1	0	genome.wustl.edu	37	chr7	100776989	100776989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ttcacagctgagttcaccacGcccgatggccattactacga	8	14	2	1			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	7	100776989	100776989	G	A	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	silent	c.714	p.T238	0.706	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	143	0	0	232	28	10.77	-	-	-	A	100776989	G	A	100776989	2	1	201	1	0	0	0	0	0	0	0	1	14199	1074	38	1		1	SERPINE1	7	100776989	Silent	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		100776989	58361674	5	12280										
DLC1	0	genome.wustl.edu	37	chr8	12957977	12957977	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	aagttgctggaggagcaaacGctgatgacggagttagtccg	15	7	0	2			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	12957977	12957977	G	A	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	silent	c.1869	p.S623	0.998	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	69	0	0	47	11	18.97	-	-	-	A	12957977	G	A	12957977	2	1	201	1	0	0	0	0	0	0	0	1	4586	1078	38	1		1	DLC1	8	12957977	Silent	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		12957977	133406045	6	12281										
COX6C	0	genome.wustl.edu	37	chr8	100899792	100899792	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ctcaaaatctttcatgacatCgtagtttctgtagaaatctg	6	8	5	2			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	100899792	100899792	C	A	SNP	COX6C	ENST00000297564	human	ensembl	69_37n	-1	known	missense	c.169	p.D57Y	1.000	pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c	pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c	-	no_errors	COX6C	HGNC	ENSG00000164919	95	0	0	168	19	10.16	-	-	-	A	100899792	C	A	100899792	3	1	201	1	0	0	0	0	1	0	0	0	3808	884	31	3	62	3	COX6C	8	100899792	Missense_Mutation	SNP	C	TCGA-A8-A08X-01A-21W-A019-09	87941815	100899792	45464230	7	12282										
SVIL	0	genome.wustl.edu	37	chr10	29813441	29813441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	tgactggctgagtttgatagCgagcgttcattctcctctgt	11	9	3	3			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	29813441	29813441	C	T	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.2546	p.R849H	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	147	0	0	166	41	19.81	-	-	-	T	29813441	C	T	29813441	3	4	201	1	0	0	0	0	1	0	0	0	15512	768	27	1	4198	1	SVIL	10	29813441	Missense_Mutation	SNP	C	TCGA-A8-A08X-01A-21W-A019-09		29813441	105721306	8	12283										
PDS5B	0	genome.wustl.edu	37	chr13	33233398	33233398	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	tttggatacggttttagtaaAtctggtacctgctcataagg	10	6	2	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	33233398	33233398	A	T	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.605	p.N202I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	222	0	0	164	53	24.42	-	-	-	T	33233398	A	T	33233398	3	4	201	1	0	0	0	0	1	0	0	0	11765	101	4	5	623	5	PDS5B	13	33233398	Missense_Mutation	SNP	A	TCGA-A8-A08X-01A-21W-A019-09		33233398	81936480	9	12284										
FNDC3A	0	genome.wustl.edu	37	chr13	49712942	49712945	+	Splice_Site	DEL	GTAA	GTAA	-													0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ccaacattgtcaaaccagtgGtaagtatcttatgtatttta							TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	49712942	49712945	GTAA	-	DEL	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	splice_site_del	c.819+1_819+1	e6+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	FNDC3A	HGNC	ENSG00000102531	97	0	0	48	9	15.79	-	-	-	-	49712945	GTAA	-	49712942	8	5	201	1	0	1	0	1	0	0	1	0	6015	1275	44	0	853	0	FNDC3A	13	49712942	Splice_Site	DEL	GTAA	TCGA-A8-A08X-01A-21W-A019-09	16479544	49712942	65456936	10	12285										
AP1G2	0	genome.wustl.edu	37	chr14	24032653	24032654	+	Frame_Shift_Ins	INS	-	-	C													0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	gtaggcatgtagctcctgggINScccccccaatcagctgggtc							TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	24032653	24032654	-	C	INS	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1346_1345	p.A449fs	1.000:0.996	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	44	0	0	53	6	10.17	-	-	-	C	24032654	-	C	24032653	7	5	201	1	0	1	1	0	0	0	0	0	734	1203	42	0	1047	0	AP1G2	14	24032653	Frame_Shift_Ins	INS	-	TCGA-A8-A08X-01A-21W-A019-09		24032653	83316887	11	12286										
POLE2	0	genome.wustl.edu	37	chr14	50122403	50122403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	acctaccagcaaacattatgCgaagtttttccaatacttcc	4	12	0	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	50122403	50122403	C	T	SNP	POLE2	ENST00000216367	human	ensembl	69_37n	-1	known	missense	c.914	p.R305H	0.996	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479	455	0	0	281	49	14.85	-	-	-	T	50122403	C	T	50122403	3	4	201	1	0	0	0	0	1	0	0	0	12271	768	27	1	705	1	POLE2	14	50122403	Missense_Mutation	SNP	C	TCGA-A8-A08X-01A-21W-A019-09	26089750	50122403	57227137	12	12287										
TP53	0	genome.wustl.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	82	0	0	72	36	33.33	-	-	-	A	7578403	C	A	7578403	3	1	201	1	0	0	0	0	1	0	0	0	16477	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-A8-A08X-01A-21W-A019-09		7578403	73616807	13	12288										
IL12RB1	0	genome.wustl.edu	37	chr19	18186597	18186597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ggctgctccacttgctccagGaacttccttggctccccagc	9	17	0	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	19	18186597	18186597	G	A	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.662	p.S221F	0.627	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	33	0	0	28	11	28.21	-	-	-	A	18186597	G	A	18186597	3	1	201	1	0	0	0	0	1	0	0	0	7680	1174	41	2	1499	2	IL12RB1	19	18186597	Missense_Mutation	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		18186597	40942386	14	12289										
TEX13B	0	genome.wustl.edu	37	chrX	107224730	107224730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ccttctgtccaatcccctccGgcagtggccaggcctggaaa	10	16	1	0			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	X	107224730	107224730	G	A	SNP	TEX13B	ENST00000302917	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925	128	0	0	125	28	18.18	-	-	-	A	107224730	G	A	107224730	2	1	201	1	0	0	0	0	0	0	0	1	15872	1103	39	1		1	TEX13B	23	107224730	Silent	SNP	G	TCGA-A8-A08X-01A-21W-A019-09		107224730	48045830	15	12290										
PLXNA3	0	genome.wustl.edu	37	chrX	153688564	153688565	+	Frame_Shift_Ins	INS	-	-	G													0.0625	1	0.957008104689917	0.856209150326797	7.70588235294118	0	1	1	0	ctgctgctcttccttgccgtINSggggggggccctgggcaaca							TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	X	153688564	153688565	-	G	INS	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	frame_shift_ins	c.41_42	p.A17fs	0.001:0.006	pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	16	0	0	6	3	33.33	-	-	-	G	153688565	-	G	153688564	7	5	201	1	0	1	1	0	0	0	0	0	12195	1696	59	0	43	0	PLXNA3	23	153688564	Frame_Shift_Ins	INS	-	TCGA-A8-A08X-01A-21W-A019-09	46463834	153688564	1581996	16	12291										
CELA2B	0	genome.wustl.edu	37	chr1	15802970	15802970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	agccctcagttgtggggtctCcacttacgcgcctgatatgt	11	12	2	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	15802970	15802970	C	T	SNP	CELA2B	ENST00000375910	human	ensembl	69_37n	1	known	missense	c.59	p.S20F	0.970	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704	76	0	0	53	23	30.26	-	-	-	T	15802970	C	T	15802970	3	4	202	1	0	0	0	0	1	0	0	0	3241	855	30	2	65	2	CELA2B	1	15802970	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		15802970	233447651	1	12292										
CLCA2	0	genome.wustl.edu	37	chr1	86894174	86894174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	cctacaatacagagggtgtgGaaaagagggaaaatacattc	11	6	0	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	86894174	86894174	G	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	missense	c.398	p.G133E	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	197	0	0	141	33	18.97	-	-	-	A	86894174	G	A	86894174	3	1	202	1	0	0	0	0	1	0	0	0	3488	1174	41	2	408	2	CLCA2	1	86894174	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09	71091204	86894174	162356447	2	12293										
CD1E	0	genome.wustl.edu	37	chr1	158326619	158326619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	aagacatcagttctgcttggCacaagtatcgtggatcaaaa	9	8	3	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	158326619	158326619	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	missense	c.1100	p.A367V	0.002	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	272	0	0	256	48	15.79	-	-	-	T	158326619	C	T	158326619	3	4	202	1	0	0	0	0	1	0	0	0	3007	710	25	4	1122	4	CD1E	1	158326619	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	71432445	158326619	90924002	3	12294										
LHX9	0	genome.wustl.edu	37	chr1	197889140	197889140	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ccggagaagcccgccctgtgCgccggctgcgggggcaagat	17	14	0	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	197889140	197889140	C	T	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	silent	c.213	p.C71	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	85	0	0	51	14	21.54	-	-	-	T	197889140	C	T	197889140	2	4	202	1	0	0	0	0	0	0	0	1	8832	776	27	1		1	LHX9	1	197889140	Silent	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	39562521	197889140	51361481	4	12295										
KIAA1804	0	genome.wustl.edu	37	chr1	233518401	233518401	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ctgtgccactgtgcagaatgAggagcaaaaccagccggcca	12	12	0	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	233518401	233518401	A	G	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	missense	c.3055	p.R1019G	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	159	0	0	169	43	20.28	-	-	-	G	233518401	A	G	233518401	3	3	202	1	0	0	0	0	1	0	0	0	8311	295	11	5	3093	5	KIAA1804	1	233518401	Missense_Mutation	SNP	A	TCGA-A8-A08Z-01A-21W-A019-09	35629261	233518401	15732220	5	12296										
TBL1XR1	0	genome.wustl.edu	37	chr3	176771560	176771560	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	tttgaaataagtcttccttaCctcattaatactaacttctg	3	9	3	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	176771560	176771560	C	G	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	splice_site	c.204+1	e2+1	1.000	-	-	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	122	0	0	87	40	31.5	-	-	-	G	176771560	C	G	176771560	5	3	202	1	0	0	0	0	0	0	1	0	15735	521	18	4	1391	4	TBL1XR1	3	176771560	Splice_Site	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		176771560	21250870	6	12297										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	252	0	0	131	52	28.42	-	-	-	G	178952085	A	G	178952085	3	3	202	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A08Z-01A-21W-A019-09	2180525	178952085	19070345	7	12298										
USP13	0	genome.wustl.edu	37	chr3	179478911	179478911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	gctctgtagcatcagacatcGatgagtcatcagtgatgcag	11	9	4	3			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	179478911	179478911	G	C	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	missense	c.1960	p.D654H	1.000	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	151	0	0	68	31	31.31	-	-	-	C	179478911	G	C	179478911	3	2	202	1	0	0	0	0	1	0	0	0	17141	1058	37	3	2026	3	USP13	3	179478911	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09	526826	179478911	18543519	8	12299										
EIF4A2	0	genome.wustl.edu	37	chr3	186503952	186503952	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	gtatgactttgtttctaacaGctccaaaatggatcaaaatg	7	7	2	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	186503952	186503952	G	A	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	splice_site	c.521-1	e6-1	1.000	-	-	-	no_errors	EIF4A2	HGNC	ENSG00000156976	99	0	0	53	22	29.33	-	-	-	A	186503952	G	A	186503952	5	1	202	1	0	0	0	0	0	0	1	0	5062	985	34	4	539	4	EIF4A2	3	186503952	Splice_Site	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09	7025041	186503952	11518478	9	12300										
RFC1	0	genome.wustl.edu	37	chr4	39308302	39308302	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ctagagccatcatctttgccGgaaaatttaccaaactttgc	6	11	2	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	4	39308302	39308302	G	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	silent	c.1908	p.S636	0.022	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	81	0	0	55	10	15.15	-	-	-	A	39308302	G	A	39308302	2	1	202	1	0	0	0	0	0	0	0	1	13327	1103	39	1		1	RFC1	4	39308302	Silent	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09		39308302	151845974	10	12301										
MAP3K1	0	genome.wustl.edu	37	chr5	56177537	56177538	+	Frame_Shift_Del	DEL	TG	TG	-													0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	accccatgtgttttcaaaacTgttagaaatgctgagtgttt							TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	56177537	56177538	TG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2510_2511	p.L838fs	1.000:0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	279	0	0	144	63	30.14	-	-	-	-	56177538	TG	-	56177537	7	5	202	1	0	1	0	1	0	0	0	0	9314	1580	55	0	2564	0	MAP3K1	5	56177537	Frame_Shift_Del	DEL	TG	TCGA-A8-A08Z-01A-21W-A019-09		56177537	124737723	11	12302										
MAP3K1	0	genome.wustl.edu	37	chr5	56178169	56178169	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	aactttccccagtctttactCagtcaagacccttgccctcc	4	17	3	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	56178169	56178169	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3142	p.Q1048*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	304	0	0	134	62	31.63	-	-	-	T	56178169	C	T	56178169	4	4	202	1	0	0	0	0	0	1	0	0	9314	827	29	2	3196	2	MAP3K1	5	56178169	Nonsense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	632	56178169	124737091	12	12303										
RAD17	0	genome.wustl.edu	37	chr5	68684870	68684870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	tcttattttagaatggaggaAaaattactgtccctgacaaa	7	6	1	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	68684870	68684870	A	G	SNP	RAD17	ENST00000380774	human	ensembl	69_37n	1	known	missense	c.937	p.K313E	1.000	tigrfam_Checkpoint_prot_Rad24_fun/met	tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942	63	0	0	36	18	33.33	-	-	-	G	68684870	A	G	68684870	3	3	202	1	0	0	0	0	1	0	0	0	13062	15	1	5	984	5	RAD17	5	68684870	Missense_Mutation	SNP	A	TCGA-A8-A08Z-01A-21W-A019-09	12506701	68684870	112230390	13	12304										
PCDHGA5	0	genome.wustl.edu	37	chr5	140744719	140744719	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	gatccagatgagggaataaaCgggaaattgacctactcttt	10	7	1	3			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	140744719	140744719	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	silent	c.822	p.N274	0.266	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	119	1	0.83	51	16	23.88	-	-	-	T	140744719	C	T	140744719	2	4	202	1	0	0	0	0	0	0	0	1	11630	535	19	1		1	PCDHGA5	5	140744719	Silent	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	72059849	140744719	40170541	14	12305										
WDR67	0	genome.wustl.edu	37	chr8	124132397	124132397	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ttattccagaacaaccaactCatctgttttgaagttattgc	5	9	2	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	8	124132397	124132397	C	T	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	silent	c.1539	p.L513	1.000	pfam_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	43	0	0	33	14	29.79	-	-	-	T	124132397	C	T	124132397	2	4	202	1	0	0	0	0	0	0	0	1	17415	813	29	2		2	WDR67	8	124132397	Silent	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		124132397	22231625	15	12306										
COL27A1	0	genome.wustl.edu	37	chr9	116930357	116930357	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	gtcactctggtgactgcctgCgggcagcgccgggtgcctgt	16	13	2	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	9	116930357	116930357	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	silent	c.522	p.C174	0.992	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	23	0	0	14	9	39.13	-	-	-	T	116930357	C	T	116930357	2	4	202	1	0	0	0	0	0	0	0	1	3715	776	27	1		1	COL27A1	9	116930357	Silent	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		116930357	24283074	16	12307										
DAB2IP	0	genome.wustl.edu	37	chr9	124519319	124519319	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ctgatgccgaggctgaaggaGtctcgctcccacgagtccct	12	14	1	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	9	124519319	124519319	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	silent	c.390	p.E130	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	32	0	0	12	4	25	-	-	-	A	124519319	G	A	124519319	2	1	202	1	0	0	0	0	0	0	0	1	4251	1020	36	4		4	DAB2IP	9	124519319	Silent	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09	7588962	124519319	16694112	17	12308										
PDE6C	0	genome.wustl.edu	37	chr10	95380689	95380689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	tttgtgtctatcatcctaagGcttcatcacaccagctacat	5	12	4	0			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	10	95380689	95380689	G	T	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.675	p.R225S	0.976	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	1250	0	0	889	398	30.92	-	-	-	T	95380689	G	T	95380689	3	4	202	1	0	0	0	0	1	0	0	0	11720	1194	42	4	685	4	PDE6C	10	95380689	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09		95380689	40154058	18	12309										
RTN4RL2	0	genome.wustl.edu	37	chr11	57235333	57235333	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ggctcttctccaacaacctcTccaccatctacccgggcact	5	19	4	0			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	57235333	57235333	T	A	SNP	RTN4RL2	ENST00000335099	human	ensembl	69_37n	1	known	missense	c.283	p.S95T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907	213	0	0	88	39	30.71	-	-	-	A	57235333	T	A	57235333	3	1	202	1	0	0	0	0	1	0	0	0	13818	1551	54	5	289	5	RTN4RL2	11	57235333	Missense_Mutation	SNP	T	TCGA-A8-A08Z-01A-21W-A019-09		57235333	77771183	19	12310										
FAT3	0	genome.wustl.edu	37	chr11	92087511	92087511	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	atctgccagttggtgctaacAttctgaagattaaagcctat	8	8	2	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	92087511	92087511	A	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.2233	p.I745F	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	428	0	0	204	113	35.65	-	-	-	T	92087511	A	T	92087511	3	4	202	1	0	0	0	0	1	0	0	0	5737	217	8	5	2235	5	FAT3	11	92087511	Missense_Mutation	SNP	A	TCGA-A8-A08Z-01A-21W-A019-09	34852178	92087511	42919005	20	12311										
FLI1	0	genome.wustl.edu	37	chr11	128680832	128680832	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	atctaccccaaccccaacgtCccccgccatcctaacaccca	2	23	1	0			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	128680832	128680832	C	T	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	silent	c.1308	p.V436	0.765	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	296	0	0	115	44	27.67	-	-	-	T	128680832	C	T	128680832	2	4	202	1	0	0	0	0	0	0	0	1	5970	842	30	2		2	FLI1	11	128680832	Silent	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	36593321	128680832	6325684	21	12312										
FAM48A	0	genome.wustl.edu	37	chr13	37584782	37584782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ctgttctcggcagagccaagCtgagacaacactacagagag	11	11	1	3			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	13	37584782	37584782	C	T	SNP	FAM48A	ENST00000469488	human	ensembl	69_37n	-1	putative	missense	c.737	p.S246N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM48A	HGNC	ENSG00000102710	94	0	0	45	15	25	-	-	-	T	37584782	C	T	37584782	3	4	202	1	0	0	0	0	1	0	0	0	5618	796	28	4	238	4	FAM48A	13	37584782	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		37584782	77585096	22	12313										
TPM1	0	genome.wustl.edu	37	chr15	63353074	63353074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	tcttcctgctgcaggtggccCgtaagctggtcatcattgag	12	11	3	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	15	63353074	63353074	C	G	SNP	TPM1	ENST00000267996	human	ensembl	69_37n	1	known	missense	c.499	p.R167G	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416	59	0	0	27	9	25	-	-	-	G	63353074	C	G	63353074	3	3	202	1	0	0	0	0	1	0	0	0	16501	652	23	3	783	3	TPM1	15	63353074	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		63353074	39178318	23	12314										
C16orf62	0	genome.wustl.edu	37	chr16	19702725	19702727	+	In_Frame_Del	DEL	AAC	AAC	-													0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	actccaagttcctggcagaaAacaacaagctgtgtgagacg							TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	16	19702725	19702727	AAC	-	DEL	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	in_frame_del	c.2845_2847	p.N950in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	35	0	0	25	19	42.22	-	-	-	-	19702727	AAC	-	19702725	7	5	202	1	0	1	0	1	0	0	0	0	1838	14	1	0	2692	0	C16orf62	16	19702725	In_Frame_Del	DEL	AAC	TCGA-A8-A08Z-01A-21W-A019-09		19702725	70652028	24	12315										
ERBB2	0	genome.wustl.edu	37	chr17	37881332	37881332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	acctggaggatgtgcggctcGtacacagggacttggccgct	15	11	0	0			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	17	37881332	37881332	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2524	p.V842I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	79	0	0	19	14	41.18	-	-	-	A	37881332	G	A	37881332	3	1	202	1	0	0	0	0	1	0	0	0	5243	1145	40	1	2606	1	ERBB2	17	37881332	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09		37881332	43313878	25	12316										
NR1H2	0	genome.wustl.edu	37	chr19	50882307	50882307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	cccgagatgcccgccagcaaCgctttgcccacttcacggag	10	17	1	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	19	50882307	50882307	C	T	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	missense	c.796	p.R266C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	50	0	0	24	16	40	-	-	-	T	50882307	C	T	50882307	3	4	202	1	0	0	0	0	1	0	0	0	10690	536	19	1	814	1	NR1H2	19	50882307	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09		50882307	8246676	26	12317										
USP29	0	genome.wustl.edu	37	chr19	57640254	57640254	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	attgtaaaaaaagacaaagtCacctgcgtttaactttgaaa	6	6	1	2			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	19	57640254	57640254	C	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	missense	c.211	p.H71Y	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	93	0	0	140	17	10.83	-	-	-	T	57640254	C	T	57640254	3	4	202	1	0	0	0	0	1	0	0	0	17156	826	29	2	213	2	USP29	19	57640254	Missense_Mutation	SNP	C	TCGA-A8-A08Z-01A-21W-A019-09	6757947	57640254	1488729	27	12318										
RUNX1	0	genome.wustl.edu	37	chr21	36252856	36252857	+	Frame_Shift_Ins	INS	-	-	T													0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	tttgacagataacgtacctcINSttccacttcgaccgacaaac							TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	21	36252856	36252857	-	T	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.506_505	p.R169fs	1.000:0.998	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	108	0	0	43	15	25.86	-	-	-	T	36252857	-	T	36252856	7	5	202	1	0	1	1	0	0	0	0	0	13832	913	32	0	989	0	RUNX1	21	36252856	Frame_Shift_Ins	INS	-	TCGA-A8-A08Z-01A-21W-A019-09		36252856	11877039	28	12319										
RS1	0	genome.wustl.edu	37	chrX	18662718	18662718	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	atctgtaaccactggctactGtcctggaacttggagagcca	10	11	1	1			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	X	18662718	18662718	G	C	SNP	RS1	ENST00000379984	human	ensembl	69_37n	-1	known	missense	c.354	p.D118E	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	RS1	HGNC	ENSG00000102104	191	0	0	225	25	10	-	-	-	C	18662718	G	C	18662718	3	2	202	1	0	0	0	0	1	0	0	0	13779	1368	48	4	328	4	RS1	23	18662718	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09		18662718	136607842	29	12320										
HCFC1	0	genome.wustl.edu	37	chrX	153224817	153224817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.904872247913239	0.961672473867596	0	1.18794835007174	0.1	0.5224358974359	0	ctgtgttggcacaaccatccGcactccggcgggaagggagg	15	12	0	0			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	X	153224817	153224817	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1570	p.R524W	0.999	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	76	0	0	21	16	43.24	-	-	-	A	153224817	G	A	153224817	3	1	202	1	0	0	0	0	1	0	0	0	7042	1086	38	1	4609	1	HCFC1	23	153224817	Missense_Mutation	SNP	G	TCGA-A8-A08Z-01A-21W-A019-09	134562099	153224817	2045743	30	12321										
ATAD3B	0	genome.wustl.edu	37	chr1	1430987	1430987	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	aaggcggaggggcctgggcgCggggtcgagcaccccctatc	18	13	0	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	1430987	1430987	C	T	SNP	ATAD3B	ENST00000308647	human	ensembl	69_37n	1	known	silent	c.1737	p.R579	0.000	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	22	0	0	3	5	62.5	-	-	-	T	1430987	C	T	1430987	2	4	203	1	0	0	0	0	0	0	0	1	1078	755	27	1		1	ATAD3B	1	1430987	Silent	SNP	C	TCGA-A8-A090-01A-11W-A019-09		1430987	247819634	1	12322										
MYOM3	0	genome.wustl.edu	37	chr1	24432477	24432477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	gaccgtggtgtgctcccagaCggcgtgggagcgaagaggga	19	9	0	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	24432477	24432477	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.496	p.V166I	0.997	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	18	0	0	4	5	55.56	-	-	-	T	24432477	C	T	24432477	3	4	203	1	0	0	0	0	1	0	0	0	10165	536	19	1	3952	1	MYOM3	1	24432477	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	23001490	24432477	224818144	2	12323										
ZCCHC11	0	genome.wustl.edu	37	chr1	52933940	52933940	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	acaaggtggtgataactcatCtgggtttataaaaagaagaa	10	4	2	3			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	52933940	52933940	C	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	splice_site	c.2879-1	e14-1	1.000	-	-	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	76	0	0	64	38	37.25	-	-	-	A	52933940	C	A	52933940	5	1	203	1	0	0	0	0	0	0	1	0	17676	927	32	2	2123	2	ZCCHC11	1	52933940	Splice_Site	SNP	C	TCGA-A8-A090-01A-11W-A019-09	28501463	52933940	196316681	3	12324										
CYR61	0	genome.wustl.edu	37	chr1	86047823	86047823	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	gctgcgaggagtgggtctgtGacgaggatagtatcaaggac	17	6	2	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	86047823	86047823	G	A	SNP	CYR61	ENST00000451137	human	ensembl	69_37n	1	known	missense	c.490	p.D164N	1.000	pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871	121	0	0	15	17	53.12	-	-	-	A	86047823	G	A	86047823	3	1	203	1	0	0	0	0	1	0	0	0	4230	1290	45	2	500	2	CYR61	1	86047823	Missense_Mutation	SNP	G	TCGA-A8-A090-01A-11W-A019-09	33113883	86047823	163202798	4	12325										
IGSF3	0	genome.wustl.edu	37	chr1	117146250	117146250	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	cccaccgctcactcaccaagAgctgtgatggagatgggagt	12	12	2	3			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	117146250	117146250	A	G	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	silent	c.1680	p.A560	0.921	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	146	0	0	78	27	25.71	-	-	-	G	117146250	A	G	117146250	2	3	203	1	0	0	0	0	0	0	0	1	7655	291	11	5		5	IGSF3	1	117146250	Silent	SNP	A	TCGA-A8-A090-01A-11W-A019-09	31098427	117146250	132104371	5	12326										
OTUD7B	0	genome.wustl.edu	37	chr1	149931697	149931697	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ctccttctgccattcatcttCtgtgtataccagccctgact	5	15	4	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	149931697	149931697	C	T	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.751	p.E251K	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	221	0	0	306	185	37.68	-	-	-	T	149931697	C	T	149931697	3	4	203	1	0	0	0	0	1	0	0	0	11392	922	32	2	1804	2	OTUD7B	1	149931697	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	32785447	149931697	99318924	6	12327										
SEC16B	0	genome.wustl.edu	37	chr1	177905472	177905472	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tcttggccatcaggaggctgGgaagtttcttgagacactgt	13	8	3	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	1	177905472	177905472	G	A	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	silent	c.2532	p.S844	0.003	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	35	0	0	22	11	33.33	-	-	-	A	177905472	G	A	177905472	2	1	203	1	0	0	0	0	0	0	0	1	14075	1219	43	4		4	SEC16B	1	177905472	Silent	SNP	G	TCGA-A8-A090-01A-11W-A019-09	27973775	177905472	71345149	7	12328										
FAM124B	0	genome.wustl.edu	37	chr2	225266148	225266148	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ccaggctgtagaactcctgaTtggcaaaaaagtagggacac	11	9	0	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	2	225266148	225266148	T	C	SNP	FAM124B	ENST00000409685	human	ensembl	69_37n	-1	known	missense	c.338	p.N113S	0.001	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019	78	0	0	62	16	20.51	-	-	-	C	225266148	T	C	225266148	3	2	203	1	0	0	0	0	1	0	0	0	5466	1493	52	5	1128	5	FAM124B	2	225266148	Missense_Mutation	SNP	T	TCGA-A8-A090-01A-11W-A019-09		225266148	17933225	8	12329										
FLNB	0	genome.wustl.edu	37	chr3	58140575	58140576	+	Frame_Shift_Ins	INS	-	-	G													0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ggcctctccatcgctgttgaINSgggccccagtaaggccgaga							TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	3	58140575	58140576	-	G	INS	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	frame_shift_ins	c.6692_6693	p.S2234fs	1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	38	0	0	26	14	35	-	-	-	G	58140576	-	G	58140575	7	5	203	1	0	1	1	0	0	0	0	0	5980	304	11	0	6947	0	FLNB	3	58140575	Frame_Shift_Ins	INS	-	TCGA-A8-A090-01A-11W-A019-09		58140575	139881855	9	12330										
SEMA5B	0	genome.wustl.edu	37	chr3	122634434	122634434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	atggttgccatggtgaccatGggccgaagcccccatcccgt	12	14	0	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	3	122634434	122634434	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	missense	c.2003	p.P668L	0.993	superfamily_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	62	0	0	9	14	60.87	-	-	-	A	122634434	G	A	122634434	3	1	203	1	0	0	0	0	1	0	0	0	14126	1348	47	4	1654	4	SEMA5B	3	122634434	Missense_Mutation	SNP	G	TCGA-A8-A090-01A-11W-A019-09	64493859	122634434	75387996	10	12331										
OPA1	0	genome.wustl.edu	37	chr3	193365903	193365903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	aatggaagaataactatcctCgcctgcgggaacttgaccgg	11	10	0	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	3	193365903	193365903	C	T	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	missense	c.1915	p.R639C	1.000	NULL	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	93	0	0	81	26	24.3	-	-	-	T	193365903	C	T	193365903	3	4	203	1	0	0	0	0	1	0	0	0	10944	884	31	1	1993	1	OPA1	3	193365903	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	70731469	193365903	4656527	11	12332										
KLHL8	0	genome.wustl.edu	37	chr4	88104522	88104522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	cacccataagaaaatcaaccGgcaacaatggcaggcgaacc	8	13	1	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	4	88104522	88104522	G	A	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.785	p.P262L	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	125	0	0	133	54	28.88	-	-	-	A	88104522	G	A	88104522	3	1	203	1	0	0	0	0	1	0	0	0	8448	1116	39	1	1105	1	KLHL8	4	88104522	Missense_Mutation	SNP	G	TCGA-A8-A090-01A-11W-A019-09		88104522	103049754	12	12333										
DCHS2	0	genome.wustl.edu	37	chr4	155253827	155253827	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tctcatcccagacacgaacaAtgactgtagtgctcacattt	6	12	2	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	4	155253827	155253827	A	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.2036	p.I679N	0.003	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	176	0	0	170	50	22.73	-	-	-	T	155253827	A	T	155253827	3	4	203	1	0	0	0	0	1	0	0	0	4319	101	4	5	6878	5	DCHS2	4	155253827	Missense_Mutation	SNP	A	TCGA-A8-A090-01A-11W-A019-09	67149305	155253827	35900449	13	12334										
MAP3K1	0	genome.wustl.edu	37	chr5	56160594	56160595	+	Frame_Shift_Ins	INS	-	-	C													0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	aatcacaccaccccgaagagINSccccttcaccagatggcttc							TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	5	56160594	56160595	-	C	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.868_869	p.S292fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	151	0	0	116	63	35.2	-	-	-	C	56160595	-	C	56160594	7	5	203	1	0	1	1	0	0	0	0	0	9314	971	34	0	882	0	MAP3K1	5	56160594	Frame_Shift_Ins	INS	-	TCGA-A8-A090-01A-11W-A019-09		56160594	124754666	14	12335										
BHMT2	0	genome.wustl.edu	37	chr5	78379147	78379147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	gcagcctctggggttccacgCgcctgactgtggcaaagagg	15	12	1	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	5	78379147	78379147	C	T	SNP	BHMT2	ENST00000255192	human	ensembl	69_37n	1	known	missense	c.731	p.A244V	0.998	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840	112	0	0	154	21	12	-	-	-	T	78379147	C	T	78379147	3	4	203	1	0	0	0	0	1	0	0	0	1431	768	27	1	753	1	BHMT2	5	78379147	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	22218553	78379147	102536113	15	12336										
MED7	0	genome.wustl.edu	37	chr5	156566070	156566070	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tgcttggtggggtcggtattCatttataagatgatgcacgt	13	5	1	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	5	156566070	156566070	C	A	SNP	MED7	ENST00000286317	human	ensembl	69_37n	-1	known	nonsense	c.373	p.E125*	1.000	pfam_Mediatior_Med7	pfam_Mediatior_Med7	-	no_errors	MED7	HGNC	ENSG00000155868	192	0	0	164	74	30.83	-	-	-	A	156566070	C	A	156566070	4	1	203	1	0	0	0	0	0	1	0	0	9523	835	29	2	332	2	MED7	5	156566070	Nonsense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	78186923	156566070	24349190	16	12337										
LAMA2	0	genome.wustl.edu	37	chr6	129712680	129712680	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	taaatgaaactctaggaactCgagacgaggcctttgagaga	11	7	1	4			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	6	129712680	129712680	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	nonsense	c.5116	p.R1706*	0.991	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	362	0	0	124	146	54.07	-	-	-	T	129712680	C	T	129712680	4	4	203	1	0	0	0	0	0	1	0	0	8660	876	31	1	5258	1	LAMA2	6	129712680	Nonsense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09		129712680	41402387	17	12338										
PDK4	0	genome.wustl.edu	37	chr7	95216383	95216383	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	agtagagattcagatctcctTgaaagtactttgcatacaga	8	7	2	4			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	7	95216383	95216383	T	A	SNP	PDK4	ENST00000005178	human	ensembl	69_37n	-1	known	missense	c.1034	p.Q345L	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799	33	0	0	33	10	23.26	-	-	-	A	95216383	T	A	95216383	3	1	203	1	0	0	0	0	1	0	0	0	11751	1812	63	5	209	5	PDK4	7	95216383	Missense_Mutation	SNP	T	TCGA-A8-A090-01A-11W-A019-09		95216383	63922280	18	12339										
WNT2	0	genome.wustl.edu	37	chr7	116918218	116918218	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	gcctgctggggtcatgtagcGgttgtccagtcagcgttctt	14	10	3	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	7	116918218	116918218	G	A	SNP	WNT2	ENST00000265441	human	ensembl	69_37n	-1	known	silent	c.1074	p.T358	0.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	49	0	0	38	25	39.06	-	-	-	A	116918218	G	A	116918218	2	1	203	1	0	0	0	0	0	0	0	1	17483	1103	39	1		1	WNT2	7	116918218	Silent	SNP	G	TCGA-A8-A090-01A-11W-A019-09	21701835	116918218	42220445	19	12340										
ANK1	0	genome.wustl.edu	37	chr8	41525809	41525809	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	accacttgggtgaaggtgttCttggcctcctgcacctgctc	11	13	1	1			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	8	41525809	41525809	C	T	SNP	ANK1	ENST00000520299	human	ensembl	69_37n	-1	putative	missense	c.2848	p.E950K	0.000	NULL	pfam_ZU5,pfam_Ankyrin_rpt,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANK1	HGNC	ENSG00000029534	190	0	0	132	61	31.61	-	-	-	T	41525809	C	T	41525809	3	4	203	1	0	0	0	0	1	0	0	0	620	912	32	2	617	2	ANK1	8	41525809	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09		41525809	104838213	20	12341										
CRISPLD1	0	genome.wustl.edu	37	chr8	75927084	75927084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	atgccccttacaaacatgggCggccctgttctgcttgccca	9	15	1	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	8	75927084	75927084	C	T	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	missense	c.664	p.R222W	0.873	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	31	0	0	17	25	59.52	-	-	-	T	75927084	C	T	75927084	3	4	203	1	0	0	0	0	1	0	0	0	3912	759	27	1	682	1	CRISPLD1	8	75927084	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09	34401275	75927084	70436938	21	12342										
CERCAM	0	genome.wustl.edu	37	chr9	131186755	131186755	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	agcgccggggctgcttccgtGtccccatggtccactccacc	11	18	0	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	9	131186755	131186755	G	T	SNP	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	missense	c.628	p.V210F	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	34	0	0	2	9	81.82	-	-	-	T	131186755	G	T	131186755	3	4	203	1	0	0	0	0	1	0	0	0	3295	1377	48	4	646	4	CERCAM	9	131186755	Missense_Mutation	SNP	G	TCGA-A8-A090-01A-11W-A019-09		131186755	10026676	22	12343										
PNLIPRP1	0	genome.wustl.edu	37	chr10	118368603	118368603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	agacacagtgcgggaagacaCgctgctcaccctcacgccct	10	16	2	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	10	118368603	118368603	C	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	69_37n	1	known	missense	c.1379	p.T460M	0.005	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021	43	0	0	29	10	25.64	-	-	-	T	118368603	C	T	118368603	3	4	203	1	0	0	0	0	1	0	0	0	12224	536	19	1	1425	1	PNLIPRP1	10	118368603	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09		118368603	17166144	23	12344										
DENND5A	0	genome.wustl.edu	37	chr11	9167307	9167307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	cagatccatgggttggcagtGaacatggagccccccagctt	12	12	0	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	11	9167307	9167307	G	A	SNP	DENND5A	ENST00000531747	human	ensembl	69_37n	-1	known	missense	c.149	p.S50L	1.000	NULL	pfam_Run	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DENND5A	HGNC	ENSG00000184014	335	1	0.3	238	129	35.15	-	-	-	A	9167307	G	A	9167307	3	1	203	1	0	0	0	0	1	0	0	0	4472	1281	45	2	978	2	DENND5A	11	9167307	Missense_Mutation	SNP	G	TCGA-A8-A090-01A-11W-A019-09		9167307	125839209	24	12345										
MAML2	0	genome.wustl.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	10	0	0	15	8	34.78	-	-	-	T	95825407	C	T	95825407	2	4	203	1	0	0	0	0	0	0	0	1	9277	796	28	4		4	MAML2	11	95825407	Silent	SNP	C	TCGA-A8-A090-01A-11W-A019-09	86658100	95825407	39181109	25	12346										
ITPKA	0	genome.wustl.edu	37	chr15	41794697	41794697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tgtgcaaggagatgaggaagTgctggtgagagcgggatccc	18	6	0	3			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	15	41794697	41794697	T	C	SNP	ITPKA	ENST00000260386	human	ensembl	69_37n	1	known	missense	c.1106	p.V369A	1.000	pfam_IPK	pfam_IPK	-	no_errors	ITPKA	HGNC	ENSG00000137825	11	0	0	5	37	88.1	-	-	-	C	41794697	T	C	41794697	3	2	203	1	0	0	0	0	1	0	0	0	7971	1696	59	5	1124	5	ITPKA	15	41794697	Missense_Mutation	SNP	T	TCGA-A8-A090-01A-11W-A019-09		41794697	60736695	26	12347										
LONP2	0	genome.wustl.edu	37	chr16	48303987	48303987	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	tgaccattacgccatggaaaAattgaagaaaagagtactgg	10	6	0	4			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	16	48303987	48303987	A	T	SNP	LONP2	ENST00000285737	human	ensembl	69_37n	1	known	missense	c.1043	p.K348I	1.000	tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC	ENSG00000102910	174	0	0	65	87	57.24	-	-	-	T	48303987	A	T	48303987	3	4	203	1	0	0	0	0	1	0	0	0	8959	14	1	5	1069	5	LONP2	16	48303987	Missense_Mutation	SNP	A	TCGA-A8-A090-01A-11W-A019-09		48303987	42050766	27	12348										
TCF4	0	genome.wustl.edu	37	chr18	52928697	52928697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	caaagtcaatatttcctcacCgaagcaagtgctttccccag	6	13	2	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	18	52928697	52928697	C	T	SNP	TCF4	ENST00000570146	human	ensembl	69_37n	-1	putative	missense	c.254	p.R85Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF4	HGNC	ENSG00000196628	636	0	0	398	97	19.6	-	-	-	T	52928697	C	T	52928697	3	4	203	1	0	0	0	0	1	0	0	0	15790	666	23	1	1057	1	TCF4	18	52928697	Missense_Mutation	SNP	C	TCGA-A8-A090-01A-11W-A019-09		52928697	25148551	28	12349										
SYCP2	0	genome.wustl.edu	37	chr20	58467628	58467628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	aaaactaagtttcaccttgaTtcaatgtgtctcctgacgaa	6	9	3	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	20	58467628	58467628	T	C	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	missense	c.1922	p.N641S	0.007	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	236	0	0	286	43	13.07	-	-	-	C	58467628	T	C	58467628	3	2	203	1	0	0	0	0	1	0	0	0	15524	1493	52	5	2762	5	SYCP2	20	58467628	Missense_Mutation	SNP	T	TCGA-A8-A090-01A-11W-A019-09		58467628	4557892	29	12350										
CLDN8	0	genome.wustl.edu	37	chr21	31587665	31587665	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ggtatcgagtatctgtagctActgctcttttcgttgcaaca	9	9	2	0			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	21	31587665	31587665	A	G	SNP	CLDN8	ENST00000286809	human	ensembl	69_37n	-1	known	silent	c.579	p.S193	0.000	prints_Claudin8	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284	155	0	0	125	41	24.7	-	-	-	G	31587665	A	G	31587665	2	3	203	1	0	0	0	0	0	0	0	1	3521	388	14	5		5	CLDN8	21	31587665	Silent	SNP	A	TCGA-A8-A090-01A-11W-A019-09		31587665	16542230	30	12351										
GSPT2	0	genome.wustl.edu	37	chrX	51488498	51488498	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ttaaggacagcaggaaccatCtgcctcgagacgttcaaaga	10	10	2	2			TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	X	51488498	51488498	C	T	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	silent	c.1776	p.I592	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	212	0	0	111	32	22.38	-	-	-	T	51488498	C	T	51488498	2	4	203	1	0	0	0	0	0	0	0	1	6878	903	32	2		2	GSPT2	23	51488498	Silent	SNP	C	TCGA-A8-A090-01A-11W-A019-09		51488498	103782062	31	12352										
MAGEE1	0	genome.wustl.edu	37	chrX	75648789	75648789	+	Frame_Shift_Del	DEL	G	G	-													0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	gcacctccgtgccgcccaccGcctctgaggtaccgagcacc							TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	X	75648789	75648789	G	-	DEL	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	frame_shift_del	c.466	p.A156fs	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	17	0	0	6	6	40	-	-	-	-	75648789	G	-	75648789	7	5	203	1	0	1	0	1	0	0	0	0	9256	1087	38	0	468	0	MAGEE1	23	75648789	Frame_Shift_Del	DEL	G	TCGA-A8-A090-01A-11W-A019-09	24160291	75648789	79621771	32	12353	149	2								
MAGEE1	0	genome.wustl.edu	37	chrX	75648792	75648793	+	Frame_Shift_Ins	INS	-	-	G													0.15625	5	0.261358853301736	2.09325396825397	NA	2.09325396825397	0.020979020979021	0.233153210425938	0	ctccgtgccgcccaccgcctINSctgaggtaccgagcacctcc							TCGA-A8-A090-01A-11W-A019-09	TCGA-A8-A090-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	783e4c13-8fa5-4591-9453-1e59ca167e10	26d576f7-f43a-4477-be3b-efd4337b48d7	X	75648792	75648793	-	G	INS	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	frame_shift_ins	c.469_470	p.S157fs	0.000:0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	17	0	0	10	4	28.57	-	-	-	G	75648793	-	G	75648792	7	5	203	1	0	1	1	0	0	0	0	0	9256	1551	54	0	471	0	MAGEE1	23	75648792	Frame_Shift_Ins	INS	-	TCGA-A8-A090-01A-11W-A019-09	3	75648792	79621768	33	12354	149	2								
AADACL4	0	genome.wustl.edu	37	chr1	12726571	12726571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ctgtgagaatgacatactccGtgatgacagcttgctctata	9	9	1	4			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	1	12726571	12726571	G	A	SNP	AADACL4	ENST00000376221	human	ensembl	69_37n	1	known	missense	c.1049	p.R350H	0.870	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518	137	1	0.72	84	87	50.88	-	-	-	A	12726571	G	A	12726571	3	1	204	1	0	0	0	0	1	0	0	0	13	1145	40	1	1063	1	AADACL4	1	12726571	Missense_Mutation	SNP	G	TCGA-A8-A091-01A-11W-A019-09		12726571	236524050	1	12355										
PSRC1	0	genome.wustl.edu	37	chr1	109823046	109823047	+	Frame_Shift_Ins	INS	-	-	G													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	cctgggactgccactttcctINSggggggctgcagattgctgc							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	1	109823046	109823047	-	G	INS	PSRC1	ENST00000438534	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1060_1059	p.R353fs	0.999:1.000	NULL	NULL	-	no_errors	PSRC1	HGNC	ENSG00000134222	24	0	0	15	2	11.76	-	-	-	G	109823047	-	G	109823046	7	5	204	1	0	1	1	0	0	0	0	0	12799	1580	55	0	71	0	PSRC1	1	109823046	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09	97096475	109823046	139427575	2	12356										
APOB	0	genome.wustl.edu	37	chr2	21236081	21236081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	acagagtcagccttcatgtgGtaacgagcccgaaggctgaa	12	10	2	2			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	2	21236081	21236081	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.4167	p.Y1389	0.134	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	241	0	0	188	71	27.41	-	-	-	A	21236081	G	A	21236081	2	1	204	1	0	0	0	0	0	0	0	1	787	1256	44	4		4	APOB	2	21236081	Silent	SNP	G	TCGA-A8-A091-01A-11W-A019-09		21236081	221963292	3	12357										
CEP68	0	genome.wustl.edu	37	chr2	65298871	65298871	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ccagggtcaccaggagagggCggagcctcgtggtggttctc	17	11	2	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	2	65298871	65298871	C	T	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	missense	c.641	p.A214V	0.000	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	62	0	0	44	14	24.14	-	-	-	T	65298871	C	T	65298871	3	4	204	1	0	0	0	0	1	0	0	0	3287	768	27	1	647	1	CEP68	2	65298871	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09	44062790	65298871	177900502	4	12358										
PLXNB1	0	genome.wustl.edu	37	chr3	48454157	48454157	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gcagctgggggtaccttggtGaggaagagcttgctgttgag	18	6	0	3			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	3	48454157	48454157	G	A	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	silent	c.4848	p.L1616	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	20	0	0	2	4	66.67	-	-	-	A	48454157	G	A	48454157	2	1	204	1	0	0	0	0	0	0	0	1	12197	1277	45	2		2	PLXNB1	3	48454157	Silent	SNP	G	TCGA-A8-A091-01A-11W-A019-09		48454157	149568273	5	12359										
DRD5	0	genome.wustl.edu	37	chr4	9784610	9784610	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ttcatccttaactgcatggtCcctttctgcagtggacaccc	7	14	2	0			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	4	9784610	9784610	C	A	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	1	known	silent	c.957	p.V319	0.993	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	94	0	0	35	23	39.66	-	-	-	A	9784610	C	A	9784610	2	1	204	1	0	0	0	0	0	0	0	1	4795	842	30	2		2	DRD5	4	9784610	Silent	SNP	C	TCGA-A8-A091-01A-11W-A019-09		9784610	181369666	6	12360										
PTPRZ1	0	genome.wustl.edu	37	chr7	121651597	121651597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ccttcagtagtgaattgtttCgccatctgcatacagtttct	7	10	3	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	7	121651597	121651597	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.2497	p.R833C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	368	0	0	244	164	40.2	-	-	-	T	121651597	C	T	121651597	3	4	204	1	0	0	0	0	1	0	0	0	12897	884	31	1	2543	1	PTPRZ1	7	121651597	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09		121651597	37487066	7	12361										
PLCE1	0	genome.wustl.edu	37	chr10	95791949	95791949	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gggagagtaatggaacccccGtcaacagtggagataaggca	14	8	1	2			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	10	95791949	95791949	G	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	silent	c.1146	p.P382	0.000	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	231	0	0	168	50	22.83	-	-	-	A	95791949	G	A	95791949	2	1	204	1	0	0	0	0	0	0	0	1	12108	1132	40	1		1	PLCE1	10	95791949	Silent	SNP	G	TCGA-A8-A091-01A-11W-A019-09		95791949	39742798	8	12362										
DAGLA	0	genome.wustl.edu	37	chr11	61511439	61511440	+	Frame_Shift_Ins	INS	-	-	C													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gcggcgtcactcctgagcggINSccccccagtgctgcggccaa							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	61511439	61511440	-	C	INS	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	frame_shift_ins	c.2607_2608	p.S871fs	1.000:1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	10	0	0	6	3	33.33	-	-	-	C	61511440	-	C	61511439	7	5	204	1	0	1	1	0	0	0	0	0	4258	1190	42	0	2681	0	DAGLA	11	61511439	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09		61511439	73495077	9	12363										
TRMT112	0	genome.wustl.edu	37	chr11	64084586	64084586	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ctcattctcctcatatccctCaaccggccctttcggcacct	4	19	4	0			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	64084586	64084586	C	T	SNP	TRMT112	ENST00000544844	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	0.045	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	TRMT112	HGNC	ENSG00000173113	57	0	0	28	16	36.36	-	-	-	T	64084586	C	T	64084586	3	4	204	1	0	0	0	0	1	0	0	0	16659	835	29	2	171	2	TRMT112	11	64084586	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09	2573147	64084586	70921930	10	12364										
SLC22A12	0	genome.wustl.edu	37	chr11	64368333	64368333	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	tatgggacggtgccagtgctGagtggcctggccgcactgct	16	11	0	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	64368333	64368333	G	C	SNP	SLC22A12	ENST00000377574	human	ensembl	69_37n	1	known	silent	c.1521	p.L507	0.180	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891	38	0	0	10	6	37.5	-	-	-	C	64368333	G	C	64368333	2	2	204	1	0	0	0	0	0	0	0	1	14532	1277	45	2		2	SLC22A12	11	64368333	Silent	SNP	G	TCGA-A8-A091-01A-11W-A019-09	283747	64368333	70638183	11	12365										
PPFIA1	0	genome.wustl.edu	37	chr11	70189979	70189979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	tgcttcaggagcagctggacGccatcaacaaagagatcagg	12	10	3	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	70189979	70189979	G	A	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	missense	c.1912	p.A638T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	28	0	0	13	12	48	-	-	-	A	70189979	G	A	70189979	3	1	204	1	0	0	0	0	1	0	0	0	12382	1087	38	1	1966	1	PPFIA1	11	70189979	Missense_Mutation	SNP	G	TCGA-A8-A091-01A-11W-A019-09	5821646	70189979	64816537	12	12366										
NCOR2	0	genome.wustl.edu	37	chr12	124882708	124882709	+	Frame_Shift_Ins	INS	-	-	T													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	cttctgtccagcgagaactcINStcattcagctccatggaggc							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	12	124882708	124882709	-	T	INS	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1833_1832	p.S612fs	1.000:1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	71	0	0	26	9	25.71	-	-	-	T	124882709	-	T	124882708	7	5	204	1	0	1	1	0	0	0	0	0	10308	912	32	0	5863	0	NCOR2	12	124882708	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09		124882708	8969187	13	12367										
PLEKHH1	0	genome.wustl.edu	37	chr14	68028888	68028889	+	Frame_Shift_Ins	INS	-	-	C													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	cttcacggaagctgctggtgINScccccctacggagctgcaga							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	14	68028888	68028889	-	C	INS	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	frame_shift_ins	c.540_541	p.Y182fs	0.351:0.020	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	40	0	0	33	4	10.81	-	-	-	C	68028889	-	C	68028888	7	5	204	1	0	1	1	0	0	0	0	0	12150	1306	46	0	562	0	PLEKHH1	14	68028888	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09		68028888	39320652	14	12368										
AXIN1	0	genome.wustl.edu	37	chr16	396381	396381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ctacagactttggggctctcCgagcctgtcctcgtatattc	9	13	1	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	396381	396381	C	T	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	silent	c.645	p.S215	0.854	superfamily_Regulat_G_prot_signal_superfam	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	54	0	0	33	23	41.07	-	-	-	T	396381	C	T	396381	2	4	204	1	0	0	0	0	0	0	0	1	1240	639	23	1		1	AXIN1	16	396381	Silent	SNP	C	TCGA-A8-A091-01A-11W-A019-09		396381	89958372	15	12369										
PRKCB	0	genome.wustl.edu	37	chr16	24202462	24202462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gttgtggacctgaaggcgaaCgtgatatcaaagagcatgca	13	7	1	3			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	24202462	24202462	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.1774	p.R592C	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	201	0	0	218	80	26.85	-	-	-	T	24202462	C	T	24202462	3	4	204	1	0	0	0	0	1	0	0	0	12589	536	19	1	1836	1	PRKCB	16	24202462	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09	23806081	24202462	66152291	16	12370										
GPR114	0	genome.wustl.edu	37	chr16	57596358	57596359	+	Frame_Shift_Ins	INS	-	-	T													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gtccaggggccggagctcagINSttttttcctctcggtgagtt							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	57596358	57596359	-	T	INS	GPR114	ENST00000340339	human	ensembl	69_37n	1	known	frame_shift_ins	c.127_128	p.S45fs	0.000:0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	9	0	0	4	2	33.33	-	-	-	T	57596359	-	T	57596358	7	5	204	1	0	1	1	0	0	0	0	0	6681	1029	36	0	133	0	GPR114	16	57596358	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09	33393896	57596358	32758395	17	12371										
CDH1	0	genome.wustl.edu	37	chr16	68844139	68844139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	catccaacgggaatgcagttGaggatccaatggagattttg	12	7	0	2			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	68844139	68844139	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.727	p.E243K	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	238	0	0	58	127	68.28	-	-	-	A	68844139	G	A	68844139	3	1	204	1	0	0	0	0	1	0	0	0	3124	1291	45	2	749	2	CDH1	16	68844139	Missense_Mutation	SNP	G	TCGA-A8-A091-01A-11W-A019-09	11247781	68844139	21510614	18	12372										
ZMYND15	0	genome.wustl.edu	37	chr17	4645075	4645075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ctctggggatccccgaaagcCccgacagcttactgtgggag	13	13	1	0			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	17	4645075	4645075	C	A	SNP	ZMYND15	ENST00000433935	human	ensembl	69_37n	1	known	missense	c.791	p.P264H	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497	121	0	0	23	11	32.35	-	-	-	A	4645075	C	A	4645075	3	1	204	1	0	0	0	0	1	0	0	0	17804	623	22	4	797	4	ZMYND15	17	4645075	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09		4645075	76550135	19	12373										
PALM	0	genome.wustl.edu	37	chr19	734186	734186	+	Frame_Shift_Del	DEL	C	C	-													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	cttgcagacgccggtgggcaCgcccaaaggtaggacctctg							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	19	734186	734186	C	-	DEL	PALM	ENST00000338448	human	ensembl	69_37n	1	known	frame_shift_del	c.434	p.T145fs	0.982	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864	11	0	0	3	4	57.14	-	-	-	-	734186	C	-	734186	7	5	204	1	0	1	0	1	0	0	0	0	11481	536	19	0	456	0	PALM	19	734186	Frame_Shift_Del	DEL	C	TCGA-A8-A091-01A-11W-A019-09		734186	58394797	20	12374										
BTBD3	0	genome.wustl.edu	37	chr20	11903291	11903291	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gctttttacagatatatctaTtgtgatgaaattgacttggc	8	5	1	4			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	20	11903291	11903291	T	C	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	silent	c.546	p.Y182	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	173	0	0	72	92	56.1	-	-	-	C	11903291	T	C	11903291	2	2	204	1	0	0	0	0	0	0	0	1	1553	1500	52	5		5	BTBD3	20	11903291	Silent	SNP	T	TCGA-A8-A091-01A-11W-A019-09		11903291	51122229	21	12375										
CD93	0	genome.wustl.edu	37	chr20	23065886	23065887	+	Frame_Shift_Ins	INS	-	-	C													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	gggtcccaggacgcacgtggINScccccccacgacatgggctg							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	20	23065886	23065887	-	C	INS	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	frame_shift_ins	c.944_943	p.A315fs	0.008:0.011	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_CD93/CD141,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	34	0	0	18	3	14.29	-	-	-	C	23065887	-	C	23065886	7	5	204	1	0	1	1	0	0	0	0	0	3076	1203	42	0	1022	0	CD93	20	23065886	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09	11162595	23065886	39959634	22	12376										
ARFGEF2	0	genome.wustl.edu	37	chr20	47632847	47632847	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	ggatgacaacaacctgcaatCacgcactttatgctatttgt	7	10	1	1			TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	20	47632847	47632847	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.4210	p.H1404Y	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	75	0	0	231	32	12.17	-	-	-	T	47632847	C	T	47632847	3	4	204	1	0	0	0	0	1	0	0	0	855	826	29	2	4332	2	ARFGEF2	20	47632847	Missense_Mutation	SNP	C	TCGA-A8-A091-01A-11W-A019-09	24566961	47632847	15392673	23	12377										
ICOSLG	0	genome.wustl.edu	37	chr21	45651325	45651326	+	Frame_Shift_Ins	INS	-	-	GC													0.208333333333333	5	0.12311268215943	2.67660910518053	6.95918367346939	2.31972789115646	0.206349206349206	0.776190476190475	0	tctctctctccgatgtcattINStcctacaagaaagaggaaaa							TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	21	45651325	45651326	-	GC	INS	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	frame_shift_ins	c.700_699	p.N233fs	0.000:0.001	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	57	0	0	11	8	42.11	-	-	-	GC	45651326	-	GC	45651325	7	5	204	1	0	1	1	0	0	0	0	0	7541	1841	64	0	220	0	ICOSLG	21	45651325	Frame_Shift_Ins	INS	-	TCGA-A8-A091-01A-11W-A019-09		45651325	2478570	24	12378										
EVI5	0	genome.wustl.edu	37	chr1	93168985	93168985	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	aataaaacctcctgtccaagGctatctttttccttaaaaaa	3	10	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	93168985	93168985	G	C	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	missense	c.663	p.S221R	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	144	0	0	35	58	62.37	-	-	-	C	93168985	G	C	93168985	3	2	205	1	0	0	0	0	1	0	0	0	5326	1194	42	4	1829	4	EVI5	1	93168985	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		93168985	156081636	1	12379										
NBPF14	0	genome.wustl.edu	37	chr1	148005450	148005451	+	In_Frame_Ins	INS	-	-	CTC													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ccccttcttttcttccccttINScttctttccttctttgatct							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	148005450	148005451	-	CTC	INS	NBPF14	ENST00000369219	human	ensembl	69_37n	-1	known	in_frame_ins	c.2475_2474	p.827in_frame_insR	0.028:0.027	NULL	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	29	0	0	20	3	13.04	-	-	-	CTC	148005451	-	CTC	148005450	7	5	205	1	0	1	1	0	0	0	0	0	10266	1780	62	0	298	0	NBPF14	1	148005450	In_Frame_Ins	INS	-	TCGA-A8-A092-01A-11W-A019-09	54836465	148005450	101245171	2	12380										
ARNT	0	genome.wustl.edu	37	chr1	150801630	150801630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	caaaagtgaagataccctcaAtgttgtgtcgggagatgaac	11	7	1	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	150801630	150801630	A	G	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	missense	c.1106	p.I369T	0.998	pfam_PAS_fold,smart_PAS,pfscan_PAS,prints_Nuc_translocat,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	145	0	0	166	45	21.33	-	-	-	G	150801630	A	G	150801630	3	3	205	1	0	0	0	0	1	0	0	0	969	101	4	5	1307	5	ARNT	1	150801630	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	2796180	150801630	98448991	3	12381										
TMOD4	0	genome.wustl.edu	37	chr1	151143396	151143396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	caggggaagggaatgctgacCtgattgtctacacggagctc	14	9	1	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	151143396	151143396	C	T	SNP	TMOD4	ENST00000466891	human	ensembl	69_37n	-1	putative	missense	c.323	p.R108K	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMOD4	HGNC	ENSG00000163157	57	0	0	123	16	11.51	-	-	-	T	151143396	C	T	151143396	3	4	205	1	0	0	0	0	1	0	0	0	16331	695	24	4	179	4	TMOD4	1	151143396	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	341766	151143396	98107225	4	12382										
LELP1	0	genome.wustl.edu	37	chr1	153177188	153177188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agataatcaagaaacaatgtCgagtgatgataaaagtaaat	8	3	1	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	153177188	153177188	C	T	SNP	LELP1	ENST00000368747	human	ensembl	69_37n	1	known	missense	c.5	p.S2L	0.999	NULL	NULL	-	no_errors	LELP1	HGNC	ENSG00000203784	308	0	0	527	70	11.67	-	-	-	T	153177188	C	T	153177188	3	4	205	1	0	0	0	0	1	0	0	0	8772	893	31	1	7	1	LELP1	1	153177188	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	2033792	153177188	96073433	5	12383										
ADAM15	0	genome.wustl.edu	37	chr1	155029769	155029769	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gaacggctgcctagcctaccCcctatggctgctttctgcgg	11	15	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	155029769	155029769	C	A	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	silent	c.1254	p.P418	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	125	0	0	37	10	21.28	-	-	-	A	155029769	C	A	155029769	2	1	205	1	0	0	0	0	0	0	0	1	237	610	22	4		4	ADAM15	1	155029769	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09	1852581	155029769	94220852	6	12384										
ANGEL2	0	genome.wustl.edu	37	chr1	213168400	213168400	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gagtcagagctcaagtctgaActttgccaataaaggcagat	10	8	3	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	213168400	213168400	A	C	SNP	ANGEL2	ENST00000366962	human	ensembl	69_37n	-1	known	missense	c.1618	p.F540V	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	104	0	0	123	36	22.64	-	-	-	C	213168400	A	C	213168400	3	2	205	1	0	0	0	0	1	0	0	0	609	43	2	5	20	5	ANGEL2	1	213168400	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	58138631	213168400	36082221	7	12385										
SUSD4	0	genome.wustl.edu	37	chr1	223408322	223408322	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gagatgtggtggtgctagttGaggaacaggtaggtgctggg	20	3	0	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	223408322	223408322	G	A	SNP	SUSD4	ENST00000344029	human	ensembl	69_37n	-1	known	missense	c.845	p.S282L	0.003	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	193	0	0	266	93	25.91	-	-	-	A	223408322	G	A	223408322	3	1	205	1	0	0	0	0	1	0	0	0	15501	1294	45	2	796	2	SUSD4	1	223408322	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	10239922	223408322	25842299	8	12386										
PARP1	0	genome.wustl.edu	37	chr1	226561965	226561965	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tttcttcatactttccacatCaaagatcatcttgatgaggt	5	9	5	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	1	226561965	226561965	C	G	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.2032	p.D678H	1.000	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pirsf_NAD_ADPRT,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	115	0	0	220	32	12.7	-	-	-	G	226561965	C	G	226561965	3	3	205	1	0	0	0	0	1	0	0	0	11527	826	29	2	1052	2	PARP1	1	226561965	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	3153643	226561965	22688656	9	12387										
FAM179A	0	genome.wustl.edu	37	chr2	29259479	29259479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agtgggcgctggagtccttcGccaagatgatccccctcctc	11	15	0	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	29259479	29259479	G	A	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.2491	p.A831T	0.007	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	181	0	0	62	42	40.38	-	-	-	A	29259479	G	A	29259479	3	1	205	1	0	0	0	0	1	0	0	0	5545	1087	38	1	2557	1	FAM179A	2	29259479	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		29259479	213939894	10	12388										
MTIF2	0	genome.wustl.edu	37	chr2	55463838	55463840	+	In_Frame_Del	DEL	AAC	AAC	-													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atttgcttttcttcataacaAacaattctgtctcccacttg							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	55463838	55463840	AAC	-	DEL	MTIF2	ENST00000263629	human	ensembl	69_37n	-1	known	in_frame_del	c.2130_2128	p.V710in_frame_del	0.995:0.997:0.854	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	92	0	0	62	26	29.55	-	-	-	-	55463840	AAC	-	55463838	7	5	205	1	0	1	0	1	0	0	0	0	10006	1	1	0	57	0	MTIF2	2	55463838	In_Frame_Del	DEL	AAC	TCGA-A8-A092-01A-11W-A019-09	26204359	55463838	187735535	11	12389										
ZEB2	0	genome.wustl.edu	37	chr2	145147374	145147374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gggttccaagtgccctttctCgcgcgcctcgcgctccgccg	12	18	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	145147374	145147374	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	missense	c.3289	p.E1097K	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	110	0	0	42	30	41.67	-	-	-	T	145147374	C	T	145147374	3	4	205	1	0	0	0	0	1	0	0	0	17720	893	31	1	359	1	ZEB2	2	145147374	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	89683536	145147374	98051999	12	12390										
ZNF142	0	genome.wustl.edu	37	chr2	219503518	219503519	+	Frame_Shift_Ins	INS	-	-	C													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	actcacactcgggacactggINStatggcttcagtcctacagg							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	219503518	219503519	-	C	INS	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4608_4607	p.Y1536fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	17	0	0	15	4	21.05	-	-	-	C	219503519	-	C	219503518	7	5	205	1	0	1	1	0	0	0	0	0	17827	1256	44	0	459	0	ZNF142	2	219503518	Frame_Shift_Ins	INS	-	TCGA-A8-A092-01A-11W-A019-09	74356144	219503518	23695855	13	12391										
PID1	0	genome.wustl.edu	37	chr2	230020681	230020681	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ttcagcatggtctgaaagtgCtgaaaagcagaaaaataagc	10	6	2	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	2	230020681	230020681	C	T	SNP	PID1	ENST00000354069	human	ensembl	69_37n	-1	known	splice_site	c.130-1	e2-1	1.000	-	-	-	no_errors	PID1	HGNC	ENSG00000153823	201	0	0	82	48	36.92	-	-	-	T	230020681	C	T	230020681	5	4	205	1	0	0	0	0	0	0	1	0	11956	811	28	4	631	4	PID1	2	230020681	Splice_Site	SNP	C	TCGA-A8-A092-01A-11W-A019-09	10517163	230020681	13178692	14	12392										
WDR82	0	genome.wustl.edu	37	chr3	52293228	52293228	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ctcaccaatcataataaactGagagtctggagtaaatgaag	8	7	3	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	3	52293228	52293228	G	A	SNP	WDR82	ENST00000296490	human	ensembl	69_37n	-1	known	nonsense	c.754	p.Q252*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR82	HGNC	ENSG00000164091	207	0	0	113	117	50.87	-	-	-	A	52293228	G	A	52293228	4	1	205	1	0	0	0	0	0	1	0	0	17428	1299	45	2	199	2	WDR82	3	52293228	Nonsense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		52293228	145729202	15	12393										
DZIP1L	0	genome.wustl.edu	37	chr3	137822634	137822635	+	Frame_Shift_Ins	INS	-	-	C													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agttgcagaaggtgatgccaINSgcaatattctcctgcagagt							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	3	137822634	137822635	-	C	INS	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	frame_shift_ins	c.180_179	p.G61fs	0.000:0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	45	0	0	44	5	10.2	-	-	-	C	137822635	-	C	137822634	7	5	205	1	0	1	1	0	0	0	0	0	4899	175	7	0	2192	0	DZIP1L	3	137822634	Frame_Shift_Ins	INS	-	TCGA-A8-A092-01A-11W-A019-09	85529406	137822634	60199796	16	12394										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	154	0	0	36	176	83.02	-	-	-	G	178952085	A	G	178952085	3	3	205	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	41129451	178952085	19070345	17	12395										
RAB28	0	genome.wustl.edu	37	chr4	13383134	13383134	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cagagtctcctgtcttggctGagacaaagtggctactaaaa	10	9	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	4	13383134	13383134	G	A	SNP	RAB28	ENST00000504644	human	ensembl	69_37n	-1	putative	nonsense	c.85	p.Q29*	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RAB28	HGNC	ENSG00000157869	254	0	0	53	166	75.45	-	-	-	A	13383134	G	A	13383134	4	1	205	1	0	0	0	0	0	1	0	0	12999	1294	45	2	341	2	RAB28	4	13383134	Nonsense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		13383134	177771142	18	12396										
HSD17B13	0	genome.wustl.edu	37	chr4	88239546	88239546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cacatacgcatgcgcagtgaCgcctagttttcggcactcag	10	13	1	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	4	88239546	88239546	C	T	SNP	HSD17B13	ENST00000328546	human	ensembl	69_37n	-1	known	missense	c.253	p.V85I	0.886	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B13	HGNC	ENSG00000170509	96	0	0	71	16	18.39	-	-	-	T	88239546	C	T	88239546	3	4	205	1	0	0	0	0	1	0	0	0	7433	536	19	1	673	1	HSD17B13	4	88239546	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	74856412	88239546	102914730	19	12397										
SLC30A5	0	genome.wustl.edu	37	chr5	68419204	68419204	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gcctgccaggttctactcctGagattgccaccagaatatga	9	12	1	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	68419204	68419204	G	C	SNP	SLC30A5	ENST00000511158	human	ensembl	69_37n	1	novel	nonstop	c.35	p.*12S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC30A5	HGNC	ENSG00000145740	103	0	0	125	60	32.43	-	-	-	C	68419204	G	C	68419204	4	2	205	1	0	0	0	0	0	0	0	0	14647	1277	45	2	2092	2	SLC30A5	5	68419204	Nonstop_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		68419204	112496056	20	12398										
CCNB1	0	genome.wustl.edu	37	chr5	68467280	68467283	+	Splice_Site	DEL	GTAA	GTAA	-													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cttatctgagacaacttgagGtaagtattatcattcgtttt							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	68467280	68467283	GTAA	-	DEL	CCNB1	ENST00000256442	human	ensembl	69_37n	1	known	splice_site_del	c.546+1_546+1	e4+1	1.000:1.000:0.985:0.992	-	-	-	no_errors	CCNB1	HGNC	ENSG00000134057	109	0	0	112	22	16.3	-	-	-	-	68467283	GTAA	-	68467280	8	5	205	1	0	1	0	1	0	0	1	0	2940	1275	44	0	561	0	CCNB1	5	68467280	Splice_Site	DEL	GTAA	TCGA-A8-A092-01A-11W-A019-09	48076	68467280	112447980	21	12399										
DMXL1	0	genome.wustl.edu	37	chr5	118525430	118525430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	actagttgaagaaggagaaaAacagaacaaacgttttaggc	10	5	0	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	118525430	118525430	A	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.7163	p.K2388R	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	369	0	0	227	205	47.34	-	-	-	G	118525430	A	G	118525430	3	3	205	1	0	0	0	0	1	0	0	0	4630	14	1	5	7277	5	DMXL1	5	118525430	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	50058150	118525430	62389830	22	12400										
LCP2	0	genome.wustl.edu	37	chr5	169720329	169720329	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cttaccaagaagcgagccccAtcgatgtggtacttcttcac	8	13	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	169720329	169720329	A	G	SNP	LCP2	ENST00000046794	human	ensembl	69_37n	-1	known	silent	c.126	p.D42	0.018	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	40	0	0	21	8	27.59	-	-	-	G	169720329	A	G	169720329	2	3	205	1	0	0	0	0	0	0	0	1	8746	214	8	5		5	LCP2	5	169720329	Silent	SNP	A	TCGA-A8-A092-01A-11W-A019-09	51194899	169720329	11194931	23	12401										
RASGEF1C	0	genome.wustl.edu	37	chr5	179545842	179545842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cccaggtcttcttcagcctgGagacagggctcatgttcatg	11	12	5	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	5	179545842	179545842	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.932	p.S311F	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	32	0	0	19	13	40.62	-	-	-	A	179545842	G	A	179545842	3	1	205	1	0	0	0	0	1	0	0	0	13154	1174	41	2	492	2	RASGEF1C	5	179545842	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	9825513	179545842	1369418	24	12402										
BMP6	0	genome.wustl.edu	37	chr6	7845400	7845400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cgacaaggagttctcccctcGtcagcgacaccacaaagagt	9	14	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	7845400	7845400	G	A	SNP	BMP6	ENST00000283147	human	ensembl	69_37n	1	known	missense	c.692	p.R231H	0.992	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162	145	0	0	207	40	16.19	-	-	-	A	7845400	G	A	7845400	3	1	205	1	0	0	0	0	1	0	0	0	1469	1145	40	1	698	1	BMP6	6	7845400	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		7845400	163269667	25	12403										
HIST1H2BK	0	genome.wustl.edu	37	chr6	27114440	27114440	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gtgtcggggtggacctgcttCagcaccttgtacacgtatac	12	11	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	27114440	27114440	C	T	SNP	HIST1H2BK	ENST00000356950	human	ensembl	69_37n	-1	known	silent	c.138	p.L46	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BK	HGNC	ENSG00000197903	174	0	0	223	39	14.89	-	-	-	T	27114440	C	T	27114440	2	4	205	1	0	0	0	0	0	0	0	1	7201	813	29	2		2	HIST1H2BK	6	27114440	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09	19269040	27114440	144000627	26	12404										
MDC1	0	genome.wustl.edu	37	chr6	30673675	30673675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tggaaaggctccagctctgaGgacaagggagcctctggagc	15	10	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	30673675	30673675	G	T	SNP	MDC1	ENST00000417033	human	ensembl	69_37n	-1	known	missense	c.466	p.L156I	0.777	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MDC1	HGNC	ENSG00000137337	497	0	0	653	225	25.6	-	-	-	T	30673675	G	T	30673675	3	4	205	1	0	0	0	0	1	0	0	0	9474	987	35	4	3008	4	MDC1	6	30673675	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	3559235	30673675	140441392	27	12405										
UBE2J1	0	genome.wustl.edu	37	chr6	90039635	90039636	+	Frame_Shift_Ins	INS	-	-	G													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcttagctacaggttgggtaINSggttgatgaaaggatgctgc							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	90039635	90039636	-	G	INS	UBE2J1	ENST00000435041	human	ensembl	69_37n	-1	known	frame_shift_ins	c.720_719	p.T241fs	0.004:0.007	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J1	HGNC	ENSG00000198833	138	0	0	102	87	46.03	-	-	-	G	90039636	-	G	90039635	7	5	205	1	0	1	1	0	0	0	0	0	16957	407	15	0	240	0	UBE2J1	6	90039635	Frame_Shift_Ins	INS	-	TCGA-A8-A092-01A-11W-A019-09	59365960	90039635	81075432	28	12406										
PREP	0	genome.wustl.edu	37	chr6	105730425	105730425	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agcagcacactgaaagtcatCaaagcagttttgtttgttgg	10	7	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	6	105730425	105730425	C	T	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	missense	c.1582	p.D528N	1.000	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	252	0	0	96	106	52.48	-	-	-	T	105730425	C	T	105730425	3	4	205	1	0	0	0	0	1	0	0	0	12555	826	29	2	562	2	PREP	6	105730425	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	15690790	105730425	65384642	29	12407										
DNAH11	0	genome.wustl.edu	37	chr7	21730485	21730485	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	accgaattaccggaaaatctCaaagctcttttcaggcaagt	7	10	3	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	21730485	21730485	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.6048	p.L2016	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	327	0	0	146	171	53.77	-	-	-	T	21730485	C	T	21730485	2	4	205	1	0	0	0	0	0	0	0	1	4635	813	29	2		2	DNAH11	7	21730485	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09		21730485	137408178	30	12408										
INHBA	0	genome.wustl.edu	37	chr7	41729911	41729911	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gcgtctactactttttcagaGagcaacagttcactcctctc	6	13	4	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	41729911	41729911	G	C	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	silent	c.618	p.L206	0.078	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	57	0	0	44	17	27.87	-	-	-	C	41729911	G	C	41729911	2	2	205	1	0	0	0	0	0	0	0	1	7795	929	33	2		2	INHBA	7	41729911	Silent	SNP	G	TCGA-A8-A092-01A-11W-A019-09	19999426	41729911	117408752	31	12409										
AKAP9	0	genome.wustl.edu	37	chr7	91632416	91632416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ttttgaaaatatgactgttgGagaagaaagtaagcaagaac	10	3	0	5			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	91632416	91632416	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.3221	p.G1074E	0.002	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	162	0	0	129	64	33.16	-	-	-	A	91632416	G	A	91632416	3	1	205	1	0	0	0	0	1	0	0	0	459	1174	41	2	3215	2	AKAP9	7	91632416	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	49902505	91632416	67506247	32	12410										
PDK4	0	genome.wustl.edu	37	chr7	95216806	95216806	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	aactaaagaggcggtcaataAttctcaggggaacaccacct	9	10	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	95216806	95216806	A	C	SNP	PDK4	ENST00000005178	human	ensembl	69_37n	-1	known	missense	c.905	p.I302S	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799	109	1	0.91	57	26	31.33	-	-	-	C	95216806	A	C	95216806	3	2	205	1	0	0	0	0	1	0	0	0	11751	101	4	5	342	5	PDK4	7	95216806	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	3584390	95216806	63921857	33	12411										
FBXL13	0	genome.wustl.edu	37	chr7	102603988	102603988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gaacatacttactgacagatCtgaaagttttgggtcggaga	11	6	1	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	7	102603988	102603988	C	T	SNP	FBXL13	ENST00000313221	human	ensembl	69_37n	-1	known	missense	c.716	p.R239K	0.021	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL13	HGNC	ENSG00000161040	175	0	0	110	32	22.54	-	-	-	T	102603988	C	T	102603988	3	4	205	1	0	0	0	0	1	0	0	0	5755	913	32	2	1543	2	FBXL13	7	102603988	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	7387182	102603988	56534675	34	12412										
ZHX2	0	genome.wustl.edu	37	chr8	123963911	123963911	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ggcagcagaacttgaaaactCttccaaagaaaacgaagtga	9	8	1	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	8	123963911	123963911	C	G	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.161	p.S54C	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	79	0	0	332	53	13.77	-	-	-	G	123963911	C	G	123963911	3	3	205	1	0	0	0	0	1	0	0	0	17772	913	32	2	163	2	ZHX2	8	123963911	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		123963911	22400111	35	12413										
ZHX2	0	genome.wustl.edu	37	chr8	123964167	123964167	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	catcccggggaggccaacttCaagctgaagttaattaaacg	10	10	1	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	8	123964167	123964167	C	G	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.417	p.F139L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	150	0	0	581	85	12.76	-	-	-	G	123964167	C	G	123964167	3	3	205	1	0	0	0	0	1	0	0	0	17772	825	29	2	419	2	ZHX2	8	123964167	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	256	123964167	22399855	36	12414										
SLC31A1	0	genome.wustl.edu	37	chr9	116018517	116018517	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcacccaaccacttcagcctCacactcccatggtggaggag	8	16	3	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	116018517	116018517	C	T	SNP	SLC31A1	ENST00000374212	human	ensembl	69_37n	1	known	missense	c.89	p.S30L	0.217	NULL	pfam_Cop_transporter	-	no_errors	SLC31A1	HGNC	ENSG00000136868	118	0	0	98	13	11.71	-	-	-	T	116018517	C	T	116018517	3	4	205	1	0	0	0	0	1	0	0	0	14652	838	29	2	91	2	SLC31A1	9	116018517	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		116018517	25194914	37	12415										
GLE1	0	genome.wustl.edu	37	chr9	131277847	131277847	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	acacagaatctatggtacttCagtcctcacgggggatcaaa	9	10	4	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	131277847	131277847	C	T	SNP	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	nonsense	c.361	p.Q121*	0.471	NULL	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	47	0	0	31	44	58.67	-	-	-	T	131277847	C	T	131277847	4	4	205	1	0	0	0	0	0	1	0	0	6487	827	29	2	371	2	GLE1	9	131277847	Nonsense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	15259330	131277847	9935584	38	12416										
FNBP1	0	genome.wustl.edu	37	chr9	132689621	132689621	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcctccatctcttgtattttCtgcaacattagattttgtat	4	9	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	9	132689621	132689621	C	T	SNP	FNBP1	ENST00000372416	human	ensembl	69_37n	-1	known	splice_site	c.643-1	e8-1	1.000	-	-	-	no_errors	FNBP1	HGNC	ENSG00000187239	200	0	0	177	42	19.18	-	-	-	T	132689621	C	T	132689621	5	4	205	1	0	0	0	0	0	0	1	0	6011	927	32	2	1251	2	FNBP1	9	132689621	Splice_Site	SNP	C	TCGA-A8-A092-01A-11W-A019-09	1411774	132689621	8523810	39	12417										
MYO3A	0	genome.wustl.edu	37	chr10	26462851	26462851	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ccaaacagaagtctgtcaaaGacctggaagagaacagcaat	9	9	2	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	26462851	26462851	G	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.3658	p.D1220Y	0.017	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	199	0	0	109	84	43.52	-	-	-	T	26462851	G	T	26462851	3	4	205	1	0	0	0	0	1	0	0	0	10148	942	33	2	3768	2	MYO3A	10	26462851	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		26462851	109071896	40	12418										
FRMPD2	0	genome.wustl.edu	37	chr10	49383976	49383976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atatggcacactggtgttaaTgccaccctgaaaaacacaac	7	11	0	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	49383976	49383976	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2902	p.I968V	0.060	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	25	0	0	30	8	21.05	-	-	-	C	49383976	T	C	49383976	3	2	205	1	0	0	0	0	1	0	0	0	6107	1464	51	5	1055	5	FRMPD2	10	49383976	Missense_Mutation	SNP	T	TCGA-A8-A092-01A-11W-A019-09	22921125	49383976	86150771	41	12419										
CYP26A1	0	genome.wustl.edu	37	chr10	94836315	94836315	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tgatagggtttactttgcaaGagcaatcaagacaacaagtt	9	6	1	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	94836315	94836315	G	C	SNP	CYP26A1	ENST00000224356	human	ensembl	69_37n	1	known	missense	c.1014	p.K338N	0.996	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596	118	0	0	58	41	41.41	-	-	-	C	94836315	G	C	94836315	3	2	205	1	0	0	0	0	1	0	0	0	4186	933	33	2	1036	2	CYP26A1	10	94836315	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	45452339	94836315	40698432	42	12420										
SORBS1	0	genome.wustl.edu	37	chr10	97096417	97096417	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cctcaggggtgttgagatctGagagtctctgttcagtactc	12	9	4	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	97096417	97096417	G	C	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	nonsense	c.3500	p.S1167*	0.983	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	61	0	0	48	31	39.24	-	-	-	C	97096417	G	C	97096417	4	2	205	1	0	0	0	0	0	1	0	0	15016	1294	45	2	458	2	SORBS1	10	97096417	Nonsense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	2260102	97096417	38438330	43	12421										
LCOR	0	genome.wustl.edu	37	chr10	98714962	98714962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ttatccagggaagcctcttgGgcaaaaccacattacgagtt	9	10	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	98714962	98714962	G	C	SNP	LCOR	ENST00000356016	human	ensembl	69_37n	1	known	missense	c.585	p.W195C	1.000	NULL	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	LCOR	HGNC	ENSG00000196233	84	0	0	102	27	20.93	-	-	-	C	98714962	G	C	98714962	3	2	205	1	0	0	0	0	1	0	0	0	8743	1241	43	4	595	4	LCOR	10	98714962	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	1618545	98714962	36819785	44	12422										
WDR11	0	genome.wustl.edu	37	chr10	122649430	122649430	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	aatacccacacaccgaagttGggtgaggaagattcgttttg	11	8	0	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	10	122649430	122649430	G	C	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	missense	c.2252	p.W751S	1.000	pfam_WD40_repeat,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	72	0	0	101	13	11.4	-	-	-	C	122649430	G	C	122649430	3	2	205	1	0	0	0	0	1	0	0	0	17370	1357	47	4	2322	4	WDR11	10	122649430	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	23934468	122649430	12885317	45	12423										
OR51A4	0	genome.wustl.edu	37	chr11	4967817	4967817	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atgggataattggtttttctTgcaatatctcaagtttctta	7	5	3	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	11	4967817	4967817	T	A	SNP	OR51A4	ENST00000380373	human	ensembl	69_37n	-1	known	nonsense	c.514	p.K172*	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497	520	0	0	429	120	21.86	-	-	-	A	4967817	T	A	4967817	4	1	205	1	0	0	0	0	0	1	0	0	11160	1821	63	5	429	5	OR51A4	11	4967817	Nonsense_Mutation	SNP	T	TCGA-A8-A092-01A-11W-A019-09		4967817	130038699	46	12424										
ING4	0	genome.wustl.edu	37	chr12	6762144	6762144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gctgtcatagtcacttgactCaatctgtttctccttgagat	7	10	5	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	6762144	6762144	C	T	SNP	ING4	ENST00000396807	human	ensembl	69_37n	-1	known	missense	c.349	p.E117K	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING4	HGNC	ENSG00000111653	104	0	0	77	17	18.09	-	-	-	T	6762144	C	T	6762144	3	4	205	1	0	0	0	0	1	0	0	0	7792	835	29	2	420	2	ING4	12	6762144	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		6762144	127089751	47	12425										
CD69	0	genome.wustl.edu	37	chr12	9907797	9907797	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cccagtcctcagagcatgaaGaaacatggctgtctgatggc	11	11	2	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	9907797	9907797	G	C	SNP	CD69	ENST00000228434	human	ensembl	69_37n	-1	known	missense	c.248	p.S83C	0.091	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD69	HGNC	ENSG00000110848	187	0	0	35	158	81.87	-	-	-	C	9907797	G	C	9907797	3	2	205	1	0	0	0	0	1	0	0	0	3060	942	33	2	363	2	CD69	12	9907797	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	3145653	9907797	123944098	48	12426										
CDKN1B	0	genome.wustl.edu	37	chr12	12871175	12871175	+	Frame_Shift_Del	DEL	G	G	-													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	acgcatttggtggacccaaaGactgatccgtcggacagcca							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	12871175	12871175	G	-	DEL	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_del	c.402	p.T135fs	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	34	0	0	4	8	61.54	-	-	-	-	12871175	G	-	12871175	7	5	205	1	0	1	0	1	0	0	0	0	3188	933	33	0	404	0	CDKN1B	12	12871175	Frame_Shift_Del	DEL	G	TCGA-A8-A092-01A-11W-A019-09	2963378	12871175	120980720	49	12427										
SLCO1C1	0	genome.wustl.edu	37	chr12	20893300	20893300	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cctggatacatattacttctGaggtgagtactgattctccc	8	10	2	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	20893300	20893300	G	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	silent	c.1731	p.L577	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	297	0	0	340	79	18.85	-	-	-	A	20893300	G	A	20893300	2	1	205	1	0	0	0	0	0	0	0	1	14814	1277	45	2		2	SLCO1C1	12	20893300	Silent	SNP	G	TCGA-A8-A092-01A-11W-A019-09	8022125	20893300	112958595	50	12428										
KRT86	0	genome.wustl.edu	37	chr12	52699981	52699981	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atggcctgcctgatcagggaGtaccaggaggtgatgaactc	14	9	1	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	52699981	52699981	G	T	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	missense	c.1164	p.E388D	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	152	0	0	262	77	22.71	-	-	-	T	52699981	G	T	52699981	3	4	205	1	0	0	0	0	1	0	0	0	8553	1020	36	4	1190	4	KRT86	12	52699981	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	31806681	52699981	81151914	51	12429										
B4GALNT1	0	genome.wustl.edu	37	chr12	58023681	58023682	+	Frame_Shift_Ins	INS	-	-	C													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agacaagtctcttcctggggINSccccccacagttggcctaaa							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	58023681	58023682	-	C	INS	B4GALNT1	ENST00000550764	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.966_965	p.R324fs	0.051:0.035	NULL	NULL	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	22	0	0	8	2	20	-	-	-	C	58023682	-	C	58023681	7	5	205	1	0	1	1	0	0	0	0	0	1270	1218	42	0		0	B4GALNT1	12	58023681	Frame_Shift_Ins	INS	-	TCGA-A8-A092-01A-11W-A019-09	5323700	58023681	75828214	52	12430										
PIWIL1	0	genome.wustl.edu	37	chr12	130847321	130847321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ctctgaatagctggttctcaCgctgcatatttcaggataga	9	9	3	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	130847321	130847321	C	T	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.1981	p.R661C	0.984	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	108	0	0	111	17	13.28	-	-	-	T	130847321	C	T	130847321	3	4	205	1	0	0	0	0	1	0	0	0	12031	536	19	1	2043	1	PIWIL1	12	130847321	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	72823640	130847321	3004574	53	12431										
GOLGA3	0	genome.wustl.edu	37	chr12	133381492	133381492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gactgcttcagggtgtccacCtccgagctcagcgaatcctg	11	14	2	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	12	133381492	133381492	C	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.1407	p.E469D	0.990	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	36	0	0	33	30	47.62	-	-	-	A	133381492	C	A	133381492	3	1	205	1	0	0	0	0	1	0	0	0	6606	680	24	4	3299	4	GOLGA3	12	133381492	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	2534171	133381492	470403	54	12432										
TPTE2	0	genome.wustl.edu	37	chr13	20048120	20048120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	caatagctagagaaatagaaCgatactccaaaggaatataa	7	6	0	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	13	20048120	20048120	C	T	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.326	p.R109H	0.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	151	0	0	119	42	26.09	-	-	-	T	20048120	C	T	20048120	3	4	205	1	0	0	0	0	1	0	0	0	16527	536	19	1	1302	1	TPTE2	13	20048120	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		20048120	95121758	55	12433										
RBM25	0	genome.wustl.edu	37	chr14	73572680	73572680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gcgagagagggaacgggagcGagaaagagaaaaagacaaaa	16	4	0	4			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	14	73572680	73572680	G	A	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	missense	c.1268	p.R423Q	0.845	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	309	0	0	242	344	58.6	-	-	-	A	73572680	G	A	73572680	3	1	205	1	0	0	0	0	1	0	0	0	13208	1058	37	1	1306	1	RBM25	14	73572680	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		73572680	33776860	56	12434										
DICER1	0	genome.wustl.edu	37	chr14	95560349	95560349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	agtcgtactttacagccagcGatgcaaagatggtgttgttg	12	7	0	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	14	95560349	95560349	G	A	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.5240	p.S1747L	1.000	pfam_RNase_III_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,pfscan_RNase_III_dom	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	137	0	0	125	36	22.36	-	-	-	A	95560349	G	A	95560349	3	1	205	1	0	0	0	0	1	0	0	0	4557	1059	37	1	544	1	DICER1	14	95560349	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	21987669	95560349	11789191	57	12435										
RYR3	0	genome.wustl.edu	37	chr15	34130404	34130404	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcatttttgatgttgtcaatGaaggtggggagcaggaaaag	14	3	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	34130404	34130404	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.12223	p.E4075K	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	151	0	0	92	48	34.29	-	-	-	A	34130404	G	A	34130404	3	1	205	1	0	0	0	0	1	0	0	0	13856	1291	45	2	12577	2	RYR3	15	34130404	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		34130404	68400988	58	12436										
UBR1	0	genome.wustl.edu	37	chr15	43282235	43282235	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tttagatacttacgaagactCaacgccaaaactcaggatgg	8	9	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	43282235	43282235	C	T	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.3841	p.E1281K	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	54	0	0	29	17	36.96	-	-	-	T	43282235	C	T	43282235	3	4	205	1	0	0	0	0	1	0	0	0	16998	835	29	2	1464	2	UBR1	15	43282235	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	9151831	43282235	59249157	59	12437										
FBN1	0	genome.wustl.edu	37	chr15	48818433	48818433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ccttcacagattccaggaatGgtgctgcattcatcaatatc	7	11	3	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	48818433	48818433	G	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.882	p.T294	0.822	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	245	0	0	101	50	33.11	-	-	-	A	48818433	G	A	48818433	2	1	205	1	0	0	0	0	0	0	0	1	5748	1335	47	4		4	FBN1	15	48818433	Silent	SNP	G	TCGA-A8-A092-01A-11W-A019-09	5536198	48818433	53712959	60	12438										
SPPL2A	0	genome.wustl.edu	37	chr15	51024842	51024842	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gttttaattaaattcagacaGaaagcaatccccaagatatc	5	8	1	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	51024842	51024842	G	C	SNP	SPPL2A	ENST00000261854	human	ensembl	69_37n	-1	known	missense	c.972	p.F324L	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Peptidase_A22	-	no_errors	SPPL2A	HGNC	ENSG00000138600	64	0	0	59	19	24.36	-	-	-	C	51024842	G	C	51024842	3	2	205	1	0	0	0	0	1	0	0	0	15179	933	33	2	618	2	SPPL2A	15	51024842	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	2206409	51024842	51506550	61	12439										
FAH	0	genome.wustl.edu	37	chr15	80454614	80454614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	acacagacttctattcctctCggcagcatgctaccaacgtc	6	15	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	80454614	80454614	C	T	SNP	FAH	ENST00000261755	human	ensembl	69_37n	1	known	missense	c.391	p.R131W	0.801	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876	216	0	0	63	36	36.36	-	-	-	T	80454614	C	T	80454614	3	4	205	1	0	0	0	0	1	0	0	0	5411	875	31	1	409	1	FAH	15	80454614	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	29429772	80454614	22076778	62	12440										
LRRK1	0	genome.wustl.edu	37	chr15	101566209	101566209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tggtgctggtggtcgggacgCacctggatttaattgaagcc	15	8	0	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	15	101566209	101566209	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.2272	p.H758Y	1.000	pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	77	0	0	18	12	40	-	-	-	T	101566209	C	T	101566209	3	4	205	1	0	0	0	0	1	0	0	0	9098	710	25	4	2334	4	LRRK1	15	101566209	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	21111595	101566209	965183	63	12441										
CNTNAP4	0	genome.wustl.edu	37	chr16	76572193	76572193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	aagcttgctgctttttgtgaGctccttttacaaagaatacc	7	9	0	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	16	76572193	76572193	G	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	missense	c.3173	p.S1058N	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	130	0	0	26	55	67.9	-	-	-	A	76572193	G	A	76572193	3	1	205	1	0	0	0	0	1	0	0	0	3679	971	34	4	3263	4	CNTNAP4	16	76572193	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09		76572193	13782560	64	12442										
KCNG4	0	genome.wustl.edu	37	chr16	84271018	84271019	+	Frame_Shift_Del	DEL	TG	TG	-													0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ccatggggctggacaggagcTgactccaagggctgtgggaa							TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	16	84271018	84271019	TG	-	DEL	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	frame_shift_del	c.74_73	p.Q25fs	0.000:0.006	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	45	0	0	22	14	38.89	-	-	-	-	84271019	TG	-	84271018	7	5	205	1	0	1	0	1	0	0	0	0	8084	1580	55	0	1491	0	KCNG4	16	84271018	Frame_Shift_Del	DEL	TG	TCGA-A8-A092-01A-11W-A019-09	7698825	84271018	6083735	65	12443										
TP53	0	genome.wustl.edu	37	chr17	7577568	7577568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	cgcccatgcaggaactgttaCacatgtagttgtagtggatg	12	8	0	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	17	7577568	7577568	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.713	p.C238Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	74	0	0	19	36	65.45	-	-	-	T	7577568	C	T	7577568	3	4	205	1	0	0	0	0	1	0	0	0	16477	478	17	4	577	4	TP53	17	7577568	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		7577568	73617642	66	12444										
MUC16	0	genome.wustl.edu	37	chr19	9058646	9058646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atcttgtaaaggacagtgctTgtctctgtggatgaggtgat	13	5	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	9058646	9058646	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.28800	p.T9600	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	85	0	0	31	73	70.19	-	-	-	C	9058646	T	C	9058646	2	2	205	1	0	0	0	0	0	0	0	1	10045	1799	63	5		5	MUC16	19	9058646	Silent	SNP	T	TCGA-A8-A092-01A-11W-A019-09		9058646	50070337	67	12445										
MUC16	0	genome.wustl.edu	37	chr19	9059401	9059401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ggtagaaattctagtgatggTttccatggaggtgtctgatg	14	4	2	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	9059401	9059401	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28045	p.T9349A	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	223	0	0	90	176	66.17	-	-	-	C	9059401	T	C	9059401	3	2	205	1	0	0	0	0	1	0	0	0	10045	1725	60	5	15806	5	MUC16	19	9059401	Missense_Mutation	SNP	T	TCGA-A8-A092-01A-11W-A019-09	755	9059401	50069582	68	12446										
GATAD2A	0	genome.wustl.edu	37	chr19	19612063	19612063	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	aactgcatgacaaccaaccaGaagaaggcgctcaaggtgga	11	10	1	3			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	19612063	19612063	G	A	SNP	GATAD2A	ENST00000418032	human	ensembl	69_37n	1	novel	missense	c.284	p.R95K	1.000	pfam_Znf_GATA	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GATAD2A	HGNC	ENSG00000167491	13	0	0	2	4	66.67	-	-	-	A	19612063	G	A	19612063	3	1	205	1	0	0	0	0	1	0	0	0	6310	933	33	2	1368	2	GATAD2A	19	19612063	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	10552662	19612063	39516920	69	12447										
ZNF682	0	genome.wustl.edu	37	chr19	20117297	20117297	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcttcacatttatagggtttCtctcccgtatgggttctctc	7	11	4	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	20117297	20117297	C	T	SNP	ZNF682	ENST00000397165	human	ensembl	69_37n	-1	known	silent	c.1014	p.E338	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124	211	0	0	168	54	24.32	-	-	-	T	20117297	C	T	20117297	2	4	205	1	0	0	0	0	0	0	0	1	18185	912	32	2		2	ZNF682	19	20117297	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09	505234	20117297	39011686	70	12448										
PSG1	0	genome.wustl.edu	37	chr19	43373185	43373185	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	atgtagggcttgggcagcttCgctgtgtggataacagagag	16	6	0	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	43373185	43373185	C	T	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	silent	c.711	p.P237	0.431	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	444	0	0	412	82	16.6	-	-	-	T	43373185	C	T	43373185	2	4	205	1	0	0	0	0	0	0	0	1	12733	898	31	1		1	PSG1	19	43373185	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09	23255888	43373185	15755798	71	12449										
TRPM4	0	genome.wustl.edu	37	chr19	49674925	49674925	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gcctggcggagaccctggaaGacactctggccccagggagt	15	13	1	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	49674925	49674925	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	missense	c.949	p.D317N	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	44	0	0	22	22	50	-	-	-	A	49674925	G	A	49674925	3	1	205	1	0	0	0	0	1	0	0	0	16684	942	33	2	979	2	TRPM4	19	49674925	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	6301740	49674925	9454058	72	12450										
SIGLEC5	0	genome.wustl.edu	37	chr19	52132741	52132741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tccgaggagcgggtggtctcGgggtccagggggctgagggc	22	9	1	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	19	52132741	52132741	G	A	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.000	pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	55	0	0	44	7	13.73	-	-	-	A	52132741	G	A	52132741	2	1	205	1	0	0	0	0	0	0	0	1	14400	1103	39	1		1	SIGLEC5	19	52132741	Silent	SNP	G	TCGA-A8-A092-01A-11W-A019-09	2457816	52132741	6996242	73	12451										
UQCR10	0	genome.wustl.edu	37	chr22	30163499	30163499	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcttcgagcgcgccttcgatCaaggcgcggacgctatctac	11	14	3	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	22	30163499	30163499	C	T	SNP	UQCR10	ENST00000330029	human	ensembl	69_37n	1	known	nonsense	c.112	p.Q38*	0.997	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	-	no_errors	UQCR10	HGNC	ENSG00000184076	22	0	0	13	5	27.78	-	-	-	T	30163499	C	T	30163499	4	4	205	1	0	0	0	0	0	1	0	0	17113	827	29	2	114	2	UQCR10	22	30163499	Nonsense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09		30163499	21141067	74	12452										
DMD	0	genome.wustl.edu	37	chrX	32382795	32382795	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tttgtgatgtggtccacattCtggtcaaaagtttccatgtg	10	7	2	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	32382795	32382795	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.5058	p.Q1686	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	201	0	0	168	58	25.55	-	-	-	T	32382795	C	T	32382795	2	4	205	1	0	0	0	0	0	0	0	1	4616	912	32	2		2	DMD	23	32382795	Silent	SNP	C	TCGA-A8-A092-01A-11W-A019-09		32382795	122887765	75	12453										
CYBB	0	genome.wustl.edu	37	chrX	37665784	37665784	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	tcactggctgggatgagtctCaggtaaggacaagactccaa	12	9	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	37665784	37665784	C	T	SNP	CYBB	ENST00000378588	human	ensembl	69_37n	1	known	nonsense	c.1459	p.Q487*	1.000	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168	111	0	0	89	32	26.45	-	-	-	T	37665784	C	T	37665784	4	4	205	1	0	0	0	0	0	1	0	0	4164	827	29	2	1501	2	CYBB	23	37665784	Nonsense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	5282989	37665784	117604776	76	12454										
CDK16	0	genome.wustl.edu	37	chrX	47086098	47086098	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	actactccactcagattgacAtgtggtaaggacaggtggaa	11	8	1	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	47086098	47086098	A	C	SNP	CDK16	ENST00000276052	human	ensembl	69_37n	1	known	missense	c.1255	p.M419L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK16	HGNC	ENSG00000102225	101	0	0	20	25	55.56	-	-	-	C	47086098	A	C	47086098	3	2	205	1	0	0	0	0	1	0	0	0	3161	217	8	5	1309	5	CDK16	23	47086098	Missense_Mutation	SNP	A	TCGA-A8-A092-01A-11W-A019-09	9420314	47086098	108184462	77	12455										
DGKK	0	genome.wustl.edu	37	chrX	50111995	50111995	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	accctctgcttcatcttcacGatgtctgcggtgccataaat	7	13	5	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	50111995	50111995	G	A	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	117	1	0.85	41	63	60.58	-	-	-	A	50111995	G	A	50111995	1	1	205	0	1	0	0	0	0	0	0	0	4508	1058	37	1		1	DGKK	23	50111995	RNA	SNP	G	TCGA-A8-A092-01A-11W-A019-09	3025897	50111995	105158565	78	12456										
SATL1	0	genome.wustl.edu	37	chrX	84349940	84349940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	acctgatggtttttgttgatCgtttacttctgcaatcaggc	9	8	2	2			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	84349940	84349940	C	T	SNP	SATL1	ENST00000509231	human	ensembl	69_37n	-1	known	missense	c.1756	p.D586N	0.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	26	0	0	28	15	34.88	-	-	-	T	84349940	C	T	84349940	3	4	205	1	0	0	0	0	1	0	0	0	13942	884	31	1	154	1	SATL1	23	84349940	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	34237945	84349940	70920620	79	12457										
SLC25A14	0	genome.wustl.edu	37	chrX	129474326	129474326	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	ggcggccgtgattgtaagcgGagtaagcaaacacctccatt	12	10	0	1			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	129474326	129474326	G	T	SNP	SLC25A14	ENST00000218197	human	ensembl	69_37n	1	known	missense	c.74	p.G25V	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A14	HGNC	ENSG00000102078	123	0	0	39	8	17.02	-	-	-	T	129474326	G	T	129474326	3	4	205	1	0	0	0	0	1	0	0	0	14565	1188	41	2	76	2	SLC25A14	23	129474326	Missense_Mutation	SNP	G	TCGA-A8-A092-01A-11W-A019-09	45124386	129474326	25796234	80	12458										
FHL1	0	genome.wustl.edu	37	chrX	135291482	135291482	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.37037037037037	30	1.93125136908759e-08	3.11308203991131	4.28048780487805	2.78729438457175	0.00477280909274467	0.0848692235037143	20	gccacgggaaacgcttgcctCtcaccctgtttcccagcgcc	9	18	1	0			TCGA-A8-A092-01A-11W-A019-09	TCGA-A8-A092-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	732dd0ab-c869-4d35-973f-9db064680fb1	40550f2e-0413-4ddf-85e3-edce4f47f62e	X	135291482	135291482	C	T	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	1	known	missense	c.769	p.L257F	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	115	0	0	66	36	35.29	-	-	-	T	135291482	C	T	135291482	3	4	205	1	0	0	0	0	1	0	0	0	5924	913	32	2	904	2	FHL1	23	135291482	Missense_Mutation	SNP	C	TCGA-A8-A092-01A-11W-A019-09	5817156	135291482	19979078	81	12459										
TSSK3	0	genome.wustl.edu	37	chr1	32829406	32829406	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggccctcttccgtcagatggTtgaggccatccgctactgcc	11	15	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	32829406	32829406	T	C	SNP	TSSK3	ENST00000373534	human	ensembl	69_37n	1	known	missense	c.356	p.V119A	0.976	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TSSK3	HGNC	ENSG00000162526	79	0	0	25	5	16.67	-	-	-	C	32829406	T	C	32829406	3	2	206	1	0	0	0	0	1	0	0	0	16766	1725	60	5	362	5	TSSK3	1	32829406	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09		32829406	216421215	1	12460										
OSCP1	0	genome.wustl.edu	37	chr1	36894016	36894016	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctccatatagttccccactcCtggaaggcaacactgtgcac	7	15	0	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	36894016	36894016	C	A	SNP	OSCP1	ENST00000354267	human	ensembl	69_37n	-1	known	nonsense	c.577	p.G193*	0.001	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	107	0	0	70	63	47.37	-	-	-	A	36894016	C	A	36894016	4	1	206	1	0	0	0	0	0	1	0	0	11359	690	24	4	746	4	OSCP1	1	36894016	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	4064610	36894016	212356605	2	12461										
KTI12	0	genome.wustl.edu	37	chr1	52499148	52499148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gagcggggtgcgcgccgcccGtgccaggcagtagagctcgt	18	13	0	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	52499148	52499148	G	A	SNP	KTI12	ENST00000371614	human	ensembl	69_37n	-1	known	missense	c.286	p.R96W	0.999	pfam_Chromatin_KTI12	pfam_Chromatin_KTI12	-	no_errors	KTI12	HGNC	ENSG00000198841	22	0	0	23	6	20.69	-	-	-	A	52499148	G	A	52499148	3	1	206	1	0	0	0	0	1	0	0	0	8638	1144	40	1	782	1	KTI12	1	52499148	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	15605132	52499148	196751473	3	12462										
RPRD2	0	genome.wustl.edu	37	chr1	150444379	150444379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	aacacccttgccgctcccacGggtcacccacccacgtcagg	8	20	2	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	150444379	150444379	G	A	SNP	RPRD2	ENST00000539519	human	ensembl	69_37n	1	known	missense	c.2737	p.G913R	0.994	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	352	0	0	894	153	14.54	-	-	-	A	150444379	G	A	150444379	3	1	206	1	0	0	0	0	1	0	0	0	13703	1103	39	1	2997	1	RPRD2	1	150444379	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	97945231	150444379	98806242	4	12463										
MRPL9	0	genome.wustl.edu	37	chr1	151735572	151735573	+	Frame_Shift_Ins	INS	-	-	C													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggtgcaggcgcggcttccggINSccctccccggccagcggtac							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	151735572	151735573	-	C	INS	MRPL9	ENST00000368830	human	ensembl	69_37n	-1	known	frame_shift_ins	c.204_203	p.R69fs	1.000:1.000	NULL	pfam_Ribosomal_L9_N,superfamily_Ribosomal_L9/RNase_H1_N	-	no_errors	MRPL9	HGNC	ENSG00000143436	32	0	0	60	7	10.45	-	-	-	C	151735573	-	C	151735572	7	5	206	1	0	1	1	0	0	0	0	0	9892	1190	42	0	623	0	MRPL9	1	151735572	Frame_Shift_Ins	INS	-	TCGA-A8-A093-01A-11W-A019-09	1291193	151735572	97515049	5	12464										
SPTA1	0	genome.wustl.edu	37	chr1	158615008	158615008	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	aggcactggtctaggatcttCttgcgtttttcccaagcctt	9	11	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	158615008	158615008	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.4164	p.K1388	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	251	0	0	349	121	25.74	-	-	-	T	158615008	C	T	158615008	2	4	206	1	0	0	0	0	0	0	0	1	15207	912	32	2		2	SPTA1	1	158615008	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	6879436	158615008	90635613	6	12465										
TARBP1	0	genome.wustl.edu	37	chr1	234556558	234556558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggacttggacactaattcatCctggaaaggagaagggaggg	15	6	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	234556558	234556558	C	T	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.3445	p.D1149N	1.000	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	241	1	0.41	395	59	12.97	-	-	-	T	234556558	C	T	234556558	3	4	206	1	0	0	0	0	1	0	0	0	15647	869	30	2	1460	2	TARBP1	1	234556558	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	75941550	234556558	14694063	7	12466										
RGS7	0	genome.wustl.edu	37	chr1	241094034	241094034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gaccataatctgtgttttccGgctcccaacaatttgatggc	8	11	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	241094034	241094034	G	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	missense	c.368	p.P123L	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	419	1	0.24	304	322	51.44	-	-	-	A	241094034	G	A	241094034	3	1	206	1	0	0	0	0	1	0	0	0	13394	1116	39	1	1147	1	RGS7	1	241094034	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	6537476	241094034	8156587	8	12467										
OR14C36	0	genome.wustl.edu	37	chr1	248512379	248512379	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tgtgtagctcaggtcttcctCgtggttttttttgtatatgt	10	6	2	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	1	248512379	248512379	C	T	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	201	0	0	198	31	13.42	-	-	-	T	248512379	C	T	248512379	2	4	206	1	0	0	0	0	0	0	0	1	11019	871	31	1		1	OR14C36	1	248512379	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	7418345	248512379	738242	9	12468										
TTC7A	0	genome.wustl.edu	37	chr2	47202165	47202165	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cctcccgcttccgcctgacaGagagggaggaggaagtgatc	14	12	0	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	47202165	47202165	G	A	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	1	known	missense	c.571	p.E191K	0.996	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	79	0	0	82	28	25.23	-	-	-	A	47202165	G	A	47202165	3	1	206	1	0	0	0	0	1	0	0	0	16809	943	33	2	585	2	TTC7A	2	47202165	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		47202165	195997208	10	12469										
DGUOK	0	genome.wustl.edu	37	chr2	74154071	74154071	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gcctctttctaagtcggcttCgagcacccttcagttccatg	8	14	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	74154071	74154071	C	T	SNP	DGUOK	ENST00000264093	human	ensembl	69_37n	1	known	nonsense	c.34	p.R12*	0.302	NULL	pfam_Deoxynucleoside_kinase	-	no_errors	DGUOK	HGNC	ENSG00000114956	21	0	0	22	6	21.43	-	-	-	T	74154071	C	T	74154071	4	4	206	1	0	0	0	0	0	1	0	0	4511	876	31	1	36	1	DGUOK	2	74154071	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	26951906	74154071	169045302	11	12470										
GPD2	0	genome.wustl.edu	37	chr2	157439307	157439307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gcatattttctctttaagctGatgagtgctattcaaaaagg	8	6	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	157439307	157439307	G	A	SNP	GPD2	ENST00000310454	human	ensembl	69_37n	1	known	silent	c.2061	p.L687	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_Ca-bd,prints_G3P_DH_FAD-dep,pfscan_EF_HAND_2	-	no_errors	GPD2	HGNC	ENSG00000115159	212	0	0	53	61	53.51	-	-	-	A	157439307	G	A	157439307	2	1	206	1	0	0	0	0	0	0	0	1	6656	1277	45	2		2	GPD2	2	157439307	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	83285236	157439307	85760066	12	12471										
FASTKD2	0	genome.wustl.edu	37	chr2	207639085	207639085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atctattcttcatacttactCttctctcaatcatgtctaca	1	12	8	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	207639085	207639085	C	T	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.1391	p.S464F	1.000	pfam_FAST_Leu-rich	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	239	1	0.42	86	101	54.01	-	-	-	T	207639085	C	T	207639085	3	4	206	1	0	0	0	0	1	0	0	0	5732	913	32	2	1413	2	FASTKD2	2	207639085	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	50199778	207639085	35560288	13	12472										
PIKFYVE	0	genome.wustl.edu	37	chr2	209163498	209163498	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctgaggatgaacgcaaaattCttctggtactggtccagtat	10	8	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	209163498	209163498	C	G	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.1045	p.L349V	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	150	0	0	57	85	59.86	-	-	-	G	209163498	C	G	209163498	3	3	206	1	0	0	0	0	1	0	0	0	11998	913	32	2	1071	2	PIKFYVE	2	209163498	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	1524413	209163498	34035875	14	12473										
PRKAG3	0	genome.wustl.edu	37	chr2	219694753	219694753	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	agctagttgccatggcatcgTagcaggtgtgctcctgcatg	13	10	0	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	219694753	219694753	T	G	SNP	PRKAG3	ENST00000233944	human	ensembl	69_37n	-1	known	missense	c.581	p.Y194S	1.000	NULL	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG3	HGNC	ENSG00000115592	25	0	0	24	6	20	-	-	-	G	219694753	T	G	219694753	3	3	206	1	0	0	0	0	1	0	0	0	12583	1638	57	5	928	5	PRKAG3	2	219694753	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09	10531255	219694753	23504620	15	12474										
ASB1	0	genome.wustl.edu	37	chr2	239353148	239353148	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gctggcgcgaaccctgacttCaactgcaatggtcctgtcaa	10	13	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	2	239353148	239353148	C	T	SNP	ASB1	ENST00000264607	human	ensembl	69_37n	1	known	silent	c.660	p.F220	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802	41	0	0	17	45	72.58	-	-	-	T	239353148	C	T	239353148	2	4	206	1	0	0	0	0	0	0	0	1	1017	825	29	2		2	ASB1	2	239353148	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	19658395	239353148	3846225	16	12475										
WNT7A	0	genome.wustl.edu	37	chr3	13860791	13860791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	aggctccacgtgaacggcctCgttgtacttgtccttgagca	11	12	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	13860791	13860791	C	T	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	57	0	0	42	27	39.13	-	-	-	T	13860791	C	T	13860791	3	4	206	1	0	0	0	0	1	0	0	0	17491	893	31	1	353	1	WNT7A	3	13860791	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09		13860791	184161639	17	12476										
GLT8D1	0	genome.wustl.edu	37	chr3	52730613	52730613	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttacttttccttccaaaagtTtagggtcaaaattgacaatt	5	7	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	52730613	52730613	T	G	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.392	p.K131T	0.218	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	61	0	0	38	29	43.28	-	-	-	G	52730613	T	G	52730613	3	3	206	1	0	0	0	0	1	0	0	0	6521	1841	64	5	747	5	GLT8D1	3	52730613	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09	38869822	52730613	145291817	18	12477										
IMPG2	0	genome.wustl.edu	37	chr3	100976551	100976551	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttgttggagtgaaggctaatGaggtcccaggtggtattgct	15	5	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	100976551	100976551	G	A	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	silent	c.975	p.L325	0.996	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	260	0	0	156	115	42.44	-	-	-	A	100976551	G	A	100976551	2	1	206	1	0	0	0	0	0	0	0	1	7783	1277	45	2		2	IMPG2	3	100976551	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	48245938	100976551	97045879	19	12478										
HEG1	0	genome.wustl.edu	37	chr3	124746131	124746131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tctggtcctgaggaatttctCttcctagaaggcgtggtcag	12	9	3	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	124746131	124746131	C	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.831	p.K277N	0.104	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	73	0	0	58	51	46.36	-	-	-	G	124746131	C	G	124746131	3	3	206	1	0	0	0	0	1	0	0	0	7095	912	32	2	3374	2	HEG1	3	124746131	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	23769580	124746131	73276299	20	12479										
PHC3	0	genome.wustl.edu	37	chr3	169846805	169846805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tgctggcctggggataccaaGgcagactgctgaactgggcc	15	11	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	169846805	169846805	G	A	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	silent	c.1455	p.A485	0.048	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	76	0	0	57	32	35.96	-	-	-	A	169846805	G	A	169846805	2	1	206	1	0	0	0	0	0	0	0	1	11892	987	35	4		4	PHC3	3	169846805	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	45100674	169846805	28175625	21	12480										
PIK3CA	0	genome.wustl.edu	37	chr3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctctctctgaaatcactgagCaggagaaagattttctatgg	9	8	4	4			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	87	0	0	72	42	36.84	-	-	-	A	178936094	C	A	178936094	3	1	206	1	0	0	0	0	1	0	0	0	11987	711	25	4	1670	4	PIK3CA	3	178936094	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	9089289	178936094	19086336	22	12481										
MAP3K13	0	genome.wustl.edu	37	chr3	185181413	185181413	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cttgtatacaccggttagatGaagaactgattcgaaggcgc	11	8	0	4			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	3	185181413	185181413	G	A	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	missense	c.1354	p.E452K	1.000	pirsf_MAP3K12_MAP3K13,superfamily_Kinase-like_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	137	0	0	84	85	50.3	-	-	-	A	185181413	G	A	185181413	3	1	206	1	0	0	0	0	1	0	0	0	9318	1291	45	2	1380	2	MAP3K13	3	185181413	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	6245319	185181413	12841017	23	12482										
C4orf19	0	genome.wustl.edu	37	chr4	37591780	37591780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tcaacagctgcaagctagatGaagacgacactgataaatta	8	8	1	4			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	37591780	37591780	G	A	SNP	C4orf19	ENST00000284437	human	ensembl	69_37n	1	known	missense	c.103	p.E35K	0.972	NULL	NULL	-	no_errors	C4orf19	HGNC	ENSG00000154274	207	0	0	245	52	17.51	-	-	-	A	37591780	G	A	37591780	3	1	206	1	0	0	0	0	1	0	0	0	2274	1291	45	2	109	2	C4orf19	4	37591780	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		37591780	153562496	24	12483										
USO1	0	genome.wustl.edu	37	chr4	76695834	76695834	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctttcttctctatagggcgtCttactactgcaggcactaac	7	12	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	76695834	76695834	C	G	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	silent	c.567	p.V189	0.991	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	90	0	0	72	18	20	-	-	-	G	76695834	C	G	76695834	2	3	206	1	0	0	0	0	0	0	0	1	17136	900	32	2		2	USO1	4	76695834	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	39104054	76695834	114458442	25	12484										
PTPN13	0	genome.wustl.edu	37	chr4	87720273	87720273	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gcttaattcagaagccacaaGaaaagaagactgatgatgat	9	6	1	7			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	87720273	87720273	G	T	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	nonsense	c.6436	p.E2146*	0.050	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	41	0	0	24	9	27.27	-	-	-	T	87720273	G	T	87720273	4	4	206	1	0	0	0	0	0	1	0	0	12863	943	33	2	6598	2	PTPN13	4	87720273	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	11024439	87720273	103434003	26	12485										
RAP1GDS1	0	genome.wustl.edu	37	chr4	99325751	99325751	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tcttgctccattggcagaaaAtggtgagaaacttaaatgca	9	7	1	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	99325751	99325751	A	G	SNP	RAP1GDS1	ENST00000339360	human	ensembl	69_37n	1	known	missense	c.764	p.N255S	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698	208	0	0	179	52	22.51	-	-	-	G	99325751	A	G	99325751	3	3	206	1	0	0	0	0	1	0	0	0	13122	101	4	5	790	5	RAP1GDS1	4	99325751	Missense_Mutation	SNP	A	TCGA-A8-A093-01A-11W-A019-09	11605478	99325751	91828525	27	12486										
FAT4	0	genome.wustl.edu	37	chr4	126370964	126370964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggagagattttcaataaacaGatcttaaaataccaaaatgt	6	5	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	126370964	126370964	G	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.8793	p.Q2931H	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	198	0	0	91	28	23.53	-	-	-	C	126370964	G	C	126370964	3	2	206	1	0	0	0	0	1	0	0	0	5738	933	33	2	8827	2	FAT4	4	126370964	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	27045213	126370964	64783312	28	12487										
SMARCA5	0	genome.wustl.edu	37	chr4	144468591	144468591	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	acatagagaagattatggctCagattgaaaggggagaggcg	15	4	1	5			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	144468591	144468591	C	T	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	nonsense	c.2707	p.Q903*	1.000	pfam_SLIDE,superfamily_Homeodomain-like	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	244	0	0	170	64	27.23	-	-	-	T	144468591	C	T	144468591	4	4	206	1	0	0	0	0	0	1	0	0	14860	827	29	2	2789	2	SMARCA5	4	144468591	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	18097627	144468591	46685685	29	12488										
PRMT10	0	genome.wustl.edu	37	chr4	148559724	148559724	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gacattgcttttgtgatgctGaatgctgagtacaagttcct	10	7	0	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	4	148559724	148559724	G	A	SNP	PRMT10	ENST00000322396	human	ensembl	69_37n	-1	known	nonsense	c.2497	p.Q833*	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169	270	0	0	163	151	48.09	-	-	-	A	148559724	G	A	148559724	4	1	206	1	0	0	0	0	0	1	0	0	12617	1299	45	2	44	2	PRMT10	4	148559724	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	4091133	148559724	42594552	30	12489										
ADAMTS19	0	genome.wustl.edu	37	chr5	129001204	129001204	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tcttacaggttatgtagaagTgctggtgatacctgctggag	13	6	1	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	5	129001204	129001204	T	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.2420	p.V807E	0.999	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	55	0	0	43	36	45.57	-	-	-	A	129001204	T	A	129001204	3	1	206	1	0	0	0	0	1	0	0	0	264	1696	59	5	2482	5	ADAMTS19	5	129001204	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09		129001204	51914056	31	12490										
PCDHB7	0	genome.wustl.edu	37	chr5	140553379	140553379	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tacacattaactattcaggcCaaagacggcggcgggctttc	10	11	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	5	140553379	140553379	C	G	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	silent	c.963	p.A321	0.393	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	82	0	0	41	22	34.92	-	-	-	G	140553379	C	G	140553379	2	3	206	1	0	0	0	0	0	0	0	1	11620	581	21	4		4	PCDHB7	5	140553379	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	11552175	140553379	40361881	32	12491										
PCDHB14	0	genome.wustl.edu	37	chr5	140604697	140604697	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	acagaccgcgggtccccggcGttgagcagcgaggcgctggt	17	13	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	5	140604697	140604697	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	silent	c.1620	p.A540	0.631	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	47	0	0	23	21	47.73	-	-	-	A	140604697	G	A	140604697	2	1	206	1	0	0	0	0	0	0	0	1	11612	1132	40	1		1	PCDHB14	5	140604697	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	51318	140604697	40310563	33	12492										
SOX30	0	genome.wustl.edu	37	chr5	157078243	157078243	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cttggtcaatcttatcagctCtgaaggcggagctccctgaa	10	11	4	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	5	157078243	157078243	C	T	SNP	SOX30	ENST00000265007	human	ensembl	69_37n	-1	known	missense	c.844	p.E282K	0.999	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX30	HGNC	ENSG00000039600	67	0	0	20	16	44.44	-	-	-	T	157078243	C	T	157078243	3	4	206	1	0	0	0	0	1	0	0	0	15041	922	32	2	1437	2	SOX30	5	157078243	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	16473546	157078243	23837017	34	12493										
MAK	0	genome.wustl.edu	37	chr6	10791936	10791936	+	Frame_Shift_Del	DEL	C	C	-													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	agaatcttttttccttttttCtttaaaaacacccatgcttg							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	6	10791936	10791936	C	-	DEL	MAK	ENST00000313243	human	ensembl	69_37n	-1	known	frame_shift_del	c.1288	p.E430fs	0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAK	HGNC	ENSG00000111837	79	0	0	50	36	37.11	-	-	-	-	10791936	C	-	10791936	7	5	206	1	0	1	0	1	0	0	0	0	9268	922	32	0	603	0	MAK	6	10791936	Frame_Shift_Del	DEL	C	TCGA-A8-A093-01A-11W-A019-09		10791936	160323131	35	12494										
COL10A1	0	genome.wustl.edu	37	chr6	116442021	116442021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tgggcccacagggcctgggaGaccaggaggtcctccaactc	14	14	0	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	6	116442021	116442021	G	A	SNP	COL10A1	ENST00000243222	human	ensembl	69_37n	-1	known	missense	c.1258	p.L420F	0.950	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500	79	0	0	39	14	26.42	-	-	-	A	116442021	G	A	116442021	3	1	206	1	0	0	0	0	1	0	0	0	3696	942	33	2	788	2	COL10A1	6	116442021	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	105650085	116442021	54673046	36	12495										
SERINC1	0	genome.wustl.edu	37	chr6	122774991	122774993	+	In_Frame_Del	DEL	AAG	AAG	-													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	catgaatgtgcaaaatcaatAagtaagactagttgtatgag							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	6	122774991	122774993	AAG	-	DEL	SERINC1	ENST00000339697	human	ensembl	69_37n	-1	known	in_frame_del	c.513_511	p.L171in_frame_del	1.000:1.000:1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897	134	0	0	90	26	21.49	-	-	-	-	122774993	AAG	-	122774991	7	5	206	1	0	1	0	1	0	0	0	0	14167	349	13	0	872	0	SERINC1	6	122774991	In_Frame_Del	DEL	AAG	TCGA-A8-A093-01A-11W-A019-09	6332970	122774991	48340076	37	12496										
GPR126	0	genome.wustl.edu	37	chr6	142721681	142721681	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggccatctatccaaccttctGaatacgttcttccttgtcca	5	14	3	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	6	142721681	142721681	G	A	SNP	GPR126	ENST00000367609	human	ensembl	69_37n	1	known	missense	c.1627	p.E543K	0.006	NULL	pfam_GPCR_2_secretin-like,pfam_CUB,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Pentaxin,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	54	0	0	25	7	21.88	-	-	-	A	142721681	G	A	142721681	3	1	206	1	0	0	0	0	1	0	0	0	6690	1291	45	2	1669	2	GPR126	6	142721681	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	19946690	142721681	28393386	38	12497										
PMS2	0	genome.wustl.edu	37	chr7	6013049	6013049	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gtcagttctgagaaatgacaCccaggttggcgatgtgtctc	12	9	3	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	6013049	6013049	C	G	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.2570	p.G857A	0.999	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	20	0	0	21	6	22.22	-	-	-	G	6013049	C	G	6013049	3	3	206	1	0	0	0	0	1	0	0	0	12217	507	18	4	22	4	PMS2	7	6013049	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09		6013049	153125614	39	12498										
COL28A1	0	genome.wustl.edu	37	chr7	7412809	7412809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tgtcagtttctctttatcacGagaatctgtctgtccatcag	7	10	6	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	7412809	7412809	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	missense	c.2728	p.R910C	0.927	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	147	0	0	101	32	24.06	-	-	-	A	7412809	G	A	7412809	3	1	206	1	0	0	0	0	1	0	0	0	3716	1058	37	1	665	1	COL28A1	7	7412809	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	1399760	7412809	151725854	40	12499										
FZD9	0	genome.wustl.edu	37	chr7	72849171	72849171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atgtgctacaacgtctactcGctggccttcctgatccgtgc	9	14	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	72849171	72849171	G	A	SNP	FZD9	ENST00000344575	human	ensembl	69_37n	1	known	silent	c.834	p.S278	0.954	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763	28	0	0	8	6	42.86	-	-	-	A	72849171	G	A	72849171	2	1	206	1	0	0	0	0	0	0	0	1	6186	1074	38	1		1	FZD9	7	72849171	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	65436362	72849171	86289492	41	12500										
SAMD9L	0	genome.wustl.edu	37	chr7	92764927	92764927	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gatctctctgggatcataatCaatattagatgacattgaat	7	6	4	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	92764927	92764927	C	G	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.358	p.D120H	0.000	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	590	0	0	234	196	45.48	-	-	-	G	92764927	C	G	92764927	3	3	206	1	0	0	0	0	1	0	0	0	13913	826	29	2	4400	2	SAMD9L	7	92764927	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	19915756	92764927	66373736	42	12501										
PPP1R9A	0	genome.wustl.edu	37	chr7	94919430	94919430	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gaatgacagcatcccaggacCgagcagtggtcaaaaagaaa	11	9	1	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	94919430	94919430	C	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	nonsense	c.3706	p.R1236*	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	76	0	0	55	29	34.52	-	-	-	T	94919430	C	T	94919430	4	4	206	1	0	0	0	0	0	1	0	0	12455	644	23	1	4042	1	PPP1R9A	7	94919430	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	2154503	94919430	64219233	43	12502										
SLC25A13	0	genome.wustl.edu	37	chr7	95820474	95820474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccagagtgctatagatctttCtaatgagttccatgttgtta	8	7	2	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	7	95820474	95820474	C	G	SNP	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	missense	c.701	p.R234T	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	302	2	0.66	188	142	43.03	-	-	-	G	95820474	C	G	95820474	3	3	206	1	0	0	0	0	1	0	0	0	14564	913	32	2	1377	2	SLC25A13	7	95820474	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	901044	95820474	63318189	44	12503										
PTK2B	0	genome.wustl.edu	37	chr8	27288485	27288485	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atgaagttcttcaacactctCgccggcttcgccaacatcga	7	14	3	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	8	27288485	27288485	C	T	SNP	PTK2B	ENST00000519512	human	ensembl	69_37n	1	putative	missense	c.82	p.R28C	0.007	superfamily_FERM_central,pfscan_FERM_domain	superfamily_FERM_central,pfscan_FERM_domain	-	no_start_codon:pseudogene:no_stop_codon	PTK2B	HGNC	ENSG00000120899	70	0	0	65	15	18.75	-	-	-	T	27288485	C	T	27288485	3	4	206	1	0	0	0	0	1	0	0	0	12844	871	31	1	788	1	PTK2B	8	27288485	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09		27288485	119075537	45	12504										
ASH2L	0	genome.wustl.edu	37	chr8	37967942	37967942	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tacagttttcattgcaacgtCtgccatcacagtgggaatac	8	10	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	8	37967942	37967942	C	T	SNP	ASH2L	ENST00000343823	human	ensembl	69_37n	1	known	silent	c.447	p.V149	0.434	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691	70	0	0	51	32	38.55	-	-	-	T	37967942	C	T	37967942	2	4	206	1	0	0	0	0	0	0	0	1	1046	900	32	2		2	ASH2L	8	37967942	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	10679457	37967942	108396080	46	12505										
DDHD2	0	genome.wustl.edu	37	chr8	38117635	38117635	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cttccttgatcagcctttacAgtaaaaatgacccatctatg	5	11	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	8	38117635	38117635	A	G	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	1	known	missense	c.2132	p.Q711R	0.972	NULL	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	116	0	0	158	40	20.2	-	-	-	G	38117635	A	G	38117635	3	3	206	1	0	0	0	0	1	0	0	0	4358	188	7	5	2256	5	DDHD2	8	38117635	Missense_Mutation	SNP	A	TCGA-A8-A093-01A-11W-A019-09	149693	38117635	108246387	47	12506										
WWP1	0	genome.wustl.edu	37	chr8	87460386	87460386	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tttctttgcaggcactatttCatggaaagtttatcgatact	7	7	2	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	8	87460386	87460386	C	T	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	missense	c.2008	p.H670Y	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	WWP1	HGNC	ENSG00000123124	141	0	0	193	53	21.54	-	-	-	T	87460386	C	T	87460386	3	4	206	1	0	0	0	0	1	0	0	0	17512	826	29	2	2074	2	WWP1	8	87460386	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	49342751	87460386	58903636	48	12507										
WISP1	0	genome.wustl.edu	37	chr8	134225361	134225361	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gactacagcggggaccgcccGaggtacgcaataggagtgtg	16	10	0	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	8	134225361	134225361	G	C	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	1	known	silent	c.324	p.P108	1.000	smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	70	0	0	44	31	41.33	-	-	-	C	134225361	G	C	134225361	2	2	206	1	0	0	0	0	0	0	0	1	17469	1045	37	3		3	WISP1	8	134225361	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	46764975	134225361	12138661	49	12508										
NOL6	0	genome.wustl.edu	37	chr9	33466347	33466347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccggacagggcttatcgagcCggggcagcagtgaggaccgc	17	12	0	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	9	33466347	33466347	C	T	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.2168	p.R723Q	0.960	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	40	0	0	25	18	40.91	-	-	-	T	33466347	C	T	33466347	3	4	206	1	0	0	0	0	1	0	0	0	10597	652	23	1	1312	1	NOL6	9	33466347	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09		33466347	107747084	50	12509										
MUSK	0	genome.wustl.edu	37	chr9	113547808	113547808	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttgcctgtcttgcctgcagaGaatcagcagcagtaaccctc	9	13	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	9	113547808	113547808	G	A	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.1606	p.E536K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	272	0	0	188	121	39.16	-	-	-	A	113547808	G	A	113547808	3	1	206	1	0	0	0	0	1	0	0	0	10061	956	33	2	1670	2	MUSK	9	113547808	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	80081461	113547808	27665623	51	12510										
KCNT1	0	genome.wustl.edu	37	chr9	138646986	138646986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gggctcctattctgtgggtgGagagaaagatgacactgtgg	16	6	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	9	138646986	138646986	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.511	p.E171K	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	15	0	0	7	8	53.33	-	-	-	A	138646986	G	A	138646986	3	1	206	1	0	0	0	0	1	0	0	0	8145	1175	41	2	533	2	KCNT1	9	138646986	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	25099178	138646986	2566445	52	12511										
AGAP6	0	genome.wustl.edu	37	chr10	51769464	51769464	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	agctggatgactggccagttGagctcaggaaggttatgtca	14	7	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	10	51769464	51769464	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	69_37n	1	known	missense	c.1579	p.E527K	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149	239	0	0	107	117	52.23	-	-	-	A	51769464	G	A	51769464	3	1	206	1	0	0	0	0	1	0	0	0	372	1291	45	2	1609	2	AGAP6	10	51769464	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		51769464	83765283	53	12512										
MAT1A	0	genome.wustl.edu	37	chr10	82034286	82034286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggcactttacctgacaatgaCgcccggccggaggtcgaagt	13	12	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	10	82034286	82034286	C	T	SNP	MAT1A	ENST00000372206	human	ensembl	69_37n	-1	known	missense	c.1075	p.V359I	0.997	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT1A	HGNC	ENSG00000151224	72	0	0	31	45	59.21	-	-	-	T	82034286	C	T	82034286	3	4	206	1	0	0	0	0	1	0	0	0	9400	536	19	1	120	1	MAT1A	10	82034286	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	30264822	82034286	53500461	54	12513										
SORBS1	0	genome.wustl.edu	37	chr10	97106171	97106171	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggtggcacttactttagtgtCtgagctttaaagtcaaattt	9	6	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	10	97106171	97106171	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	silent	c.2421	p.Q807	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	123	0	0	63	58	47.93	-	-	-	T	97106171	C	T	97106171	2	4	206	1	0	0	0	0	0	0	0	1	15016	912	32	2		2	SORBS1	10	97106171	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09	15071885	97106171	38428576	55	12514										
C11orf9	0	genome.wustl.edu	37	chr11	61539012	61539013	+	Frame_Shift_Ins	INS	-	-	C													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gaagaggaagcactctgaatINSccccccccagcaccctcaat							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	11	61539012	61539013	-	C	INS	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	frame_shift_ins	c.781_782	p.S264fs	1.000:1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	44	0	0	22	3	12	-	-	-	C	61539013	-	C	61539012	7	5	206	1	0	1	1	0	0	0	0	0	1682	1435	50	0	826	0	C11orf9	11	61539012	Frame_Shift_Ins	INS	-	TCGA-A8-A093-01A-11W-A019-09		61539012	73467504	56	12515										
FOLR4	0	genome.wustl.edu	37	chr11	94039800	94039800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	actgctgatgcctggctgtcGgaagcacttcatccaggcta	11	12	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	11	94039800	94039800	G	A	SNP	FOLR4	ENST00000440961	human	ensembl	69_37n	1	novel	missense	c.260	p.R87Q	0.982	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560	279	0	0	103	67	39.41	-	-	-	A	94039800	G	A	94039800	3	1	206	1	0	0	0	0	1	0	0	0	6030	1116	39	1	266	1	FOLR4	11	94039800	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	32500788	94039800	40966716	57	12516										
TECTA	0	genome.wustl.edu	37	chr11	120989316	120989316	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctccctttcttcagtgtggaGgccaagaatgaacaccgcag	10	12	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	11	120989316	120989316	G	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	silent	c.1092	p.E364	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	53	0	0	42	10	19.23	-	-	-	A	120989316	G	A	120989316	2	1	206	1	0	0	0	0	0	0	0	1	15842	991	35	4		4	TECTA	11	120989316	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	26949516	120989316	14017200	58	12517										
VWF	0	genome.wustl.edu	37	chr12	6091094	6091094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	agcactgggtcttccgaaggGtgggcaaacggtgcgggggg	20	8	1	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	12	6091094	6091094	G	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.7145	p.T2382N	0.003	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	56	0	0	47	27	36.49	-	-	-	T	6091094	G	T	6091094	3	4	206	1	0	0	0	0	1	0	0	0	17343	1261	44	4	1340	4	VWF	12	6091094	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		6091094	127760801	59	12518										
CD163L1	0	genome.wustl.edu	37	chr12	7522120	7522120	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccctcagggcagccagagcaGagccacagcccagctgctga	12	16	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	12	7522120	7522120	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.3872	p.S1291F	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	321	0	0	101	123	54.91	-	-	-	A	7522120	G	A	7522120	3	1	206	1	0	0	0	0	1	0	0	0	2997	942	33	2	509	2	CD163L1	12	7522120	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	1431026	7522120	126329775	60	12519										
KCNJ8	0	genome.wustl.edu	37	chr12	21919223	21919223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	aataggaaccacctccccttCaggtgtagttgttttcttga	8	10	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	12	21919223	21919223	C	T	SNP	KCNJ8	ENST00000240662	human	ensembl	69_37n	-1	known	missense	c.709	p.E237K	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	246	0	0	67	104	60.82	-	-	-	T	21919223	C	T	21919223	3	4	206	1	0	0	0	0	1	0	0	0	8110	835	29	2	569	2	KCNJ8	12	21919223	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	14397103	21919223	111932672	61	12520										
KIAA0528	0	genome.wustl.edu	37	chr12	22671004	22671004	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	aggtgaaaaggaataagtttGgtttttcagaggggttgagg	16	1	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	12	22671004	22671004	G	C	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.868	p.Q290E	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	191	0	0	141	42	22.95	-	-	-	C	22671004	G	C	22671004	3	2	206	1	0	0	0	0	1	0	0	0	8234	1357	47	4	2206	4	KIAA0528	12	22671004	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	751781	22671004	111180891	62	12521										
IKZF4	0	genome.wustl.edu	37	chr12	56428780	56428780	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cgggggtggtatccctccctCagggtcccccaccccagcca	11	19	1	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	12	56428780	56428780	C	T	SNP	IKZF4	ENST00000262032	human	ensembl	69_37n	1	known	nonsense	c.1423	p.Q475*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411	43	0	0	50	25	32.89	-	-	-	T	56428780	C	T	56428780	4	4	206	1	0	0	0	0	0	1	0	0	7671	827	29	2	1453	2	IKZF4	12	56428780	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	33757776	56428780	77423115	63	12522										
FREM2	0	genome.wustl.edu	37	chr13	39425221	39425221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gtgaacaaaatgaaactctcAtaaggatccgagatgatgct	9	7	1	4			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	13	39425221	39425221	A	G	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.6718	p.I2240V	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	200	0	0	117	19	13.97	-	-	-	G	39425221	A	G	39425221	3	3	206	1	0	0	0	0	1	0	0	0	6094	217	8	5	6756	5	FREM2	13	39425221	Missense_Mutation	SNP	A	TCGA-A8-A093-01A-11W-A019-09		39425221	75744657	64	12523										
AKAP11	0	genome.wustl.edu	37	chr13	42876457	42876457	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggatgtgaagtcggagcactCagggaagaaggttcagtttg	16	5	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	13	42876457	42876457	C	G	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	nonsense	c.3575	p.S1192*	0.997	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	156	0	0	113	50	30.67	-	-	-	G	42876457	C	G	42876457	4	3	206	1	0	0	0	0	0	1	0	0	447	838	29	2	3597	2	AKAP11	13	42876457	Nonsense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	3451236	42876457	72293421	65	12524										
RAB20	0	genome.wustl.edu	37	chr13	111176031	111176031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gtcaggcacaacacccagatCtggtcctcttgggtggctta	11	12	3	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	13	111176031	111176031	C	G	SNP	RAB20	ENST00000267328	human	ensembl	69_37n	-1	known	missense	c.686	p.R229T	0.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB20	HGNC	ENSG00000139832	39	0	0	61	17	21.79	-	-	-	G	111176031	C	G	111176031	3	3	206	1	0	0	0	0	1	0	0	0	12990	913	32	2	22	2	RAB20	13	111176031	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	68299574	111176031	3993847	66	12525										
STRN3	0	genome.wustl.edu	37	chr14	31374670	31374672	+	In_Frame_Del	DEL	TAA	TAA	-													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	accaatgactgtgatgtttcTaaatcataaattactgcact							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	14	31374670	31374672	TAA	-	DEL	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	in_frame_del	c.1983_1981	p.L661in_frame_del	1.000:1.000:0.999	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	170	0	0	100	79	42.7	-	-	-	-	31374672	TAA	-	31374670	7	5	206	1	0	1	0	1	0	0	0	0	15421	1519	53	0	426	0	STRN3	14	31374670	In_Frame_Del	DEL	TAA	TCGA-A8-A093-01A-11W-A019-09		31374670	75974870	67	12526										
ARG2	0	genome.wustl.edu	37	chr14	68087661	68087661	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gccataagagaagctggcttGatgaaaaggctctccagttt	11	8	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	14	68087661	68087661	G	A	SNP	ARG2	ENST00000261783	human	ensembl	69_37n	1	known	silent	c.162	p.L54	0.998	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181	141	0	0	125	40	24.24	-	-	-	A	68087661	G	A	68087661	2	1	206	1	0	0	0	0	0	0	0	1	860	1281	45	2		2	ARG2	14	68087661	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	36712991	68087661	39261879	68	12527										
ABCA3	0	genome.wustl.edu	37	chr16	2345608	2345608	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tacctgtgcgtgctctctctGggaaggatgaaagacagctc	12	10	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	16	2345608	2345608	G	C	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	silent	c.2397	p.P799	0.998	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	34	0	0	49	6	10.91	-	-	-	C	2345608	G	C	2345608	2	2	206	1	0	0	0	0	0	0	0	1	33	1335	47	4		4	ABCA3	16	2345608	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09		2345608	88009145	69	12528										
HYDIN	0	genome.wustl.edu	37	chr16	71052229	71052230	+	Frame_Shift_Ins	INS	-	-	A													0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggctgtctatctgagggtgtINStccacatacttaattgctag							TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	16	71052229	71052230	-	A	INS	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3447_3446	p.E1149fs	1.000:1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	36	0	0	18	4	18.18	-	-	-	A	71052230	-	A	71052229	7	5	206	1	0	1	1	0	0	0	0	0	7521	1722	60	0	12171	0	HYDIN	16	71052229	Frame_Shift_Ins	INS	-	TCGA-A8-A093-01A-11W-A019-09	68706621	71052229	19302524	70	12529										
DNAH2	0	genome.wustl.edu	37	chr17	7690336	7690336	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctcatcaacggcgagcgcatCgcgatgcccgagcaggtcag	13	14	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	17	7690336	7690336	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.6588	p.I2196	0.472	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	22	0	0	36	81	68.64	-	-	-	T	7690336	C	T	7690336	2	4	206	1	0	0	0	0	0	0	0	1	4638	874	31	1		1	DNAH2	17	7690336	Silent	SNP	C	TCGA-A8-A093-01A-11W-A019-09		7690336	73504874	71	12530										
MAP2K4	0	genome.wustl.edu	37	chr17	12028614	12028614	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttgtctttatgttccagcctGaaagaatagacccaagcgca	8	10	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	17	12028614	12028614	G	A	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.850	p.E284K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	128	0	0	14	55	79.71	-	-	-	A	12028614	G	A	12028614	3	1	206	1	0	0	0	0	1	0	0	0	9310	1291	45	2	847	2	MAP2K4	17	12028614	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	4338278	12028614	69166596	72	12531										
NCOR1	0	genome.wustl.edu	37	chr17	15989751	15989751	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cacttgatgtggagcaggctGaaggacttttaaaaggaaag	13	5	0	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	17	15989751	15989751	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.3022	p.Q1008*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	107	0	0	20	48	70.59	-	-	-	A	15989751	G	A	15989751	4	1	206	1	0	0	0	0	0	1	0	0	10307	1299	45	2	4396	2	NCOR1	17	15989751	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	3961137	15989751	65205459	73	12532										
NSF	0	genome.wustl.edu	37	chr17	44791323	44791323	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ataaaatgattggcttttctGaaacagccaaatgtcaggcc	8	8	2	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	17	44791323	44791323	G	A	SNP	NSF	ENST00000398238	human	ensembl	69_37n	1	known	missense	c.1732	p.E578K	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Cdc48_dom2,pfam_CDC4_N-term_subdom,pfam_ATPase_AAA-2,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	NSF	HGNC	ENSG00000073969	78	0	0	77	67	46.53	-	-	-	A	44791323	G	A	44791323	3	1	206	1	0	0	0	0	1	0	0	0	10744	1291	45	2	1790	2	NSF	17	44791323	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	28801572	44791323	36403887	74	12533										
ITGB3	0	genome.wustl.edu	37	chr17	45361815	45361815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tttctgccttccagatgattCgaagaatttctccatccaag	6	11	2	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	17	45361815	45361815	C	T	SNP	ITGB3	ENST00000262017	human	ensembl	69_37n	1	known	missense	c.368	p.S123L	0.999	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	146	0	0	188	60	24.19	-	-	-	T	45361815	C	T	45361815	3	4	206	1	0	0	0	0	1	0	0	0	7949	893	31	1	382	1	ITGB3	17	45361815	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	570492	45361815	35833395	75	12534										
SMAD2	0	genome.wustl.edu	37	chr18	45368278	45368278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccactgtagaggtccattcaGatgaagttcaatccagcaag	9	10	2	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	18	45368278	45368278	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	missense	c.1324	p.L442V	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	67	0	0	47	48	50.53	-	-	-	C	45368278	G	C	45368278	3	2	206	1	0	0	0	0	1	0	0	0	14847	933	33	2	83	2	SMAD2	18	45368278	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		45368278	32708970	76	12535										
ADAMTS10	0	genome.wustl.edu	37	chr19	8651509	8651509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggacctggtctggcccctgtCgcagttgaaaggtggtccca	14	12	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	8651509	8651509	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	69_37n	-1	known	missense	c.2336	p.R779Q	0.999	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303	33	0	0	12	7	36.84	-	-	-	T	8651509	C	T	8651509	3	4	206	1	0	0	0	0	1	0	0	0	256	884	31	1	1003	1	ADAMTS10	19	8651509	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09		8651509	50477474	77	12536										
MUC16	0	genome.wustl.edu	37	chr19	9073597	9073597	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ggagaggatgatgtttgactCtgtagttgagttcatctcct	12	6	3	4			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	9073597	9073597	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.13849	p.E4617K	0.004	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	166	0	0	148	85	36.48	-	-	-	T	9073597	C	T	9073597	3	4	206	1	0	0	0	0	1	0	0	0	10045	922	32	2	30002	2	MUC16	19	9073597	Missense_Mutation	SNP	C	TCGA-A8-A093-01A-11W-A019-09	422088	9073597	50055386	78	12537										
ZNF441	0	genome.wustl.edu	37	chr19	11892414	11892414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	acctcataaatgtaagatatGtgggaaaggctttgattatc	9	5	1	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	11892414	11892414	G	C	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.1775	p.C592S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	100	0	0	111	64	36.57	-	-	-	C	11892414	G	C	11892414	3	2	206	1	0	0	0	0	1	0	0	0	18010	1377	48	4	1789	4	ZNF441	19	11892414	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	2818817	11892414	47236569	79	12538										
ZNF44	0	genome.wustl.edu	37	chr19	12358544	12358544	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atgagtcctttcatgtctttGagctgagtagtagtatctaa	9	6	3	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	12358544	12358544	G	A	SNP	ZNF44	ENST00000426973	human	ensembl	69_37n	-1	known	nonsense	c.1171	p.Q391*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857	43	0	0	32	18	36	-	-	-	A	12358544	G	A	12358544	4	1	206	1	0	0	0	0	0	1	0	0	18008	1305	45	2		2	ZNF44	19	12358544	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	466130	12358544	46770439	80	12539										
CPAMD8	0	genome.wustl.edu	37	chr19	17108122	17108122	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gggatcatgtccctcacgcaGatgtcgaagtcccgggagcc	13	13	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	17108122	17108122	G	T	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.1067	p.S356Y	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	10	0	0	5	5	50	-	-	-	T	17108122	G	T	17108122	3	4	206	1	0	0	0	0	1	0	0	0	3825	932	33	2	4891	2	CPAMD8	19	17108122	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	4749578	17108122	42020861	81	12540										
NDUFA13	0	genome.wustl.edu	37	chr19	19626972	19626972	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	gtgccgcggaccatctcaagTgcttccgccacactcatcat	8	16	3	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	19626972	19626972	T	A	SNP	NDUFA13	ENST00000252576	human	ensembl	69_37n	1	known	missense	c.174	p.S58R	0.000	NULL	pfam_GRIM-19	-	no_errors	NDUFA13	HGNC	ENSG00000186010	19	0	0	9	14	60.87	-	-	-	A	19626972	T	A	19626972	3	1	206	1	0	0	0	0	1	0	0	0	10335	1711	59	5		5	NDUFA13	19	19626972	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09	2518850	19626972	39502011	82	12541										
ZNF540	0	genome.wustl.edu	37	chr19	38103583	38103583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atactggtgtgaagccctacGaatgtaaggaatgtgggaag	14	5	0	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	38103583	38103583	G	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1402	p.E468K	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	152	0	0	121	78	39.2	-	-	-	A	38103583	G	A	38103583	3	1	206	1	0	0	0	0	1	0	0	0	18071	1059	37	1	1416	1	ZNF540	19	38103583	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	18476611	38103583	21025400	83	12542										
ZNF180	0	genome.wustl.edu	37	chr19	44981989	44981989	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctcattctcattaatcttctGatgactgtttacagcagcat	5	10	4	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	44981989	44981989	G	A	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	nonsense	c.709	p.Q237*	0.196	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	416	0	0	273	153	35.92	-	-	-	A	44981989	G	A	44981989	4	1	206	1	0	0	0	0	0	1	0	0	17844	1299	45	2	1373	2	ZNF180	19	44981989	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	6878406	44981989	14146994	84	12543										
CABP5	0	genome.wustl.edu	37	chr19	48537515	48537515	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccattaacatcagcctcccgGacaacctcagagatctcccg	6	17	3	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	48537515	48537515	G	A	SNP	CABP5	ENST00000293255	human	ensembl	69_37n	-1	known	silent	c.453	p.V151	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CABP5	HGNC	ENSG00000105507	36	0	0	29	36	52.94	-	-	-	A	48537515	G	A	48537515	2	1	206	1	0	0	0	0	0	0	0	1	2559	1161	41	2		2	CABP5	19	48537515	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	3555526	48537515	10591468	85	12544										
LILRA4	0	genome.wustl.edu	37	chr19	54849301	54849301	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctgaatgtacccctgttgctGaaggtcagggggcccatggg	15	10	1	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	54849301	54849301	G	C	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.561	p.F187L	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	15	0	0	17	22	56.41	-	-	-	C	54849301	G	C	54849301	3	2	206	1	0	0	0	0	1	0	0	0	8842	1281	45	2	958	2	LILRA4	19	54849301	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	6311786	54849301	4279682	86	12545										
ZNF548	0	genome.wustl.edu	37	chr19	57911242	57911242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atcagagatttcacaatggaGaaagtttaccattgactatt	7	6	2	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	57911242	57911242	G	C	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	missense	c.1623	p.E541D	0.173	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	142	0	0	156	125	44.48	-	-	-	C	57911242	G	C	57911242	3	2	206	1	0	0	0	0	1	0	0	0	18076	933	33	2	1637	2	ZNF548	19	57911242	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	3061941	57911242	1217741	87	12546										
ZNF671	0	genome.wustl.edu	37	chr19	58231990	58231990	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	atgaggttgggtctttgagtGaaggctttcccgcacttgct	13	8	1	3			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	19	58231990	58231990	G	A	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	silent	c.1464	p.F488	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	203	0	0	196	166	45.86	-	-	-	A	58231990	G	A	58231990	2	1	206	1	0	0	0	0	0	0	0	1	18174	1281	45	2		2	ZNF671	19	58231990	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09	320748	58231990	896993	88	12547										
PSMF1	0	genome.wustl.edu	37	chr20	1099509	1099509	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttcttgcattgggaagtggtGacacacggttacttcggctt	12	8	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	20	1099509	1099509	G	A	SNP	PSMF1	ENST00000333082	human	ensembl	69_37n	1	known	silent	c.93	p.V31	1.000	pfam_Inhibitor_PI31	pfam_Inhibitor_PI31,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818	60	0	0	73	43	37.07	-	-	-	A	1099509	G	A	1099509	2	1	206	1	0	0	0	0	0	0	0	1	12790	1277	45	2		2	PSMF1	20	1099509	Silent	SNP	G	TCGA-A8-A093-01A-11W-A019-09		1099509	61926011	89	12548										
SLC24A3	0	genome.wustl.edu	37	chr20	19677522	19677522	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctgctgggaccagcgtgcctGactgcatggccagcctcatt	12	14	1	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	20	19677522	19677522	G	A	SNP	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	missense	c.1573	p.D525N	1.000	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	46	0	0	20	14	41.18	-	-	-	A	19677522	G	A	19677522	3	1	206	1	0	0	0	0	1	0	0	0	14556	1290	45	2	1627	2	SLC24A3	20	19677522	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	18578013	19677522	43347998	90	12549										
FAM120C	0	genome.wustl.edu	37	chrX	54112178	54112178	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ccggctcctcccttgaggggGaagtggcatggagcccatag	15	12	0	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	54112178	54112178	G	A	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2809	p.P937S	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	83	0	0	48	65	57.52	-	-	-	A	54112178	G	A	54112178	3	1	206	1	0	0	0	0	1	0	0	0	5458	1174	41	2	497	2	FAM120C	23	54112178	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09		54112178	101158382	91	12550										
NLGN3	0	genome.wustl.edu	37	chrX	70367894	70367894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	cctggtcgggcatccggaacGccacacactttcccccagtg	10	17	0	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	70367894	70367894	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.295	p.A99T	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	30	0	0	30	13	30.23	-	-	-	A	70367894	G	A	70367894	3	1	206	1	0	0	0	0	1	0	0	0	10535	1087	38	1	297	1	NLGN3	23	70367894	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	16255716	70367894	84902666	92	12551										
NRK	0	genome.wustl.edu	37	chrX	105139453	105139453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ctcaccttcacgcacaccgaGtaattcaccgggacatcaaa	6	15	4	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	105139453	105139453	G	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.517	p.V173I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	247	0	0	189	52	21.58	-	-	-	A	105139453	G	A	105139453	3	1	206	1	0	0	0	0	1	0	0	0	10728	1029	36	4	543	4	NRK	23	105139453	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	34771559	105139453	50131107	93	12552										
PLS3	0	genome.wustl.edu	37	chrX	114844608	114844608	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tttccaaagatgagcttgatGaactcaaagaggcctttgca	9	8	1	5			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	114844608	114844608	G	A	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.46	p.E16K	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	144	0	0	96	52	35.14	-	-	-	A	114844608	G	A	114844608	3	1	206	1	0	0	0	0	1	0	0	0	12182	1291	45	2	48	2	PLS3	23	114844608	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	9705155	114844608	40425952	94	12553										
LAMP2	0	genome.wustl.edu	37	chrX	119589362	119589362	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tgctattttgggaccattctGatcatccccacaaatgcttc	6	12	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	119589362	119589362	G	A	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	nonsense	c.247	p.Q83*	0.000	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	273	0	0	184	77	29.5	-	-	-	A	119589362	G	A	119589362	4	1	206	1	0	0	0	0	0	1	0	0	8672	1299	45	2	1304	2	LAMP2	23	119589362	Nonsense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	4744754	119589362	35681198	95	12554										
ODZ1	0	genome.wustl.edu	37	chrX	123654414	123654414	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	tctgtccatagatgtcggtcTtgttccaagcaaatgtgtag	10	8	2	1			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	123654414	123654414	T	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.3254	p.K1085T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	450	0	0	232	91	28.17	-	-	-	G	123654414	T	G	123654414	3	3	206	1	0	0	0	0	1	0	0	0	10907	1609	56	5	5004	5	ODZ1	23	123654414	Missense_Mutation	SNP	T	TCGA-A8-A093-01A-11W-A019-09	4065052	123654414	31616146	96	12555										
OCRL	0	genome.wustl.edu	37	chrX	128701282	128701282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	ttgttgacttcaatgaagggGaaatcaagttcatccccact	8	9	3	2			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	128701282	128701282	G	A	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.1408	p.E470K	0.969	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	164	0	0	126	32	20.25	-	-	-	A	128701282	G	A	128701282	3	1	206	1	0	0	0	0	1	0	0	0	10896	1175	41	2	1462	2	OCRL	23	128701282	Missense_Mutation	SNP	G	TCGA-A8-A093-01A-11W-A019-09	5046868	128701282	26569278	97	12556										
MAGEC3	0	genome.wustl.edu	37	chrX	140969422	140969422	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.448979591836735	44	1.03975862135372e-13	3.42857142857143	3.88235294117647	3.3	8.1293128529813e-06	0.000530031198014381	31	agtggaccccgaccatttctAtgtctttgtaaacacattag	7	10	2	0			TCGA-A8-A093-01A-11W-A019-09	TCGA-A8-A093-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f64ba22-0958-4fdb-8161-f83cfe57c95d	4f97de65-e2ea-444d-b824-70905e5059c2	X	140969422	140969422	A	G	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.749	p.Y250C	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	368	0	0	219	72	24.74	-	-	-	G	140969422	A	G	140969422	3	3	206	1	0	0	0	0	1	0	0	0	9253	449	16	5	763	5	MAGEC3	23	140969422	Missense_Mutation	SNP	A	TCGA-A8-A093-01A-11W-A019-09	12268140	140969422	14301138	98	12557										
PRAMEF10	0	genome.wustl.edu	37	chr1	12954599	12954599	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cgaagattgctcatctggctCaggtaaggggcaaactttcc	11	10	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	12954599	12954599	C	G	SNP	PRAMEF10	ENST00000235347	human	ensembl	69_37n	-1	known	silent	c.684	p.L228	0.019	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	524	0	0	268	55	17.03	-	-	-	G	12954599	C	G	12954599	2	3	207	1	0	0	0	0	0	0	0	1	12503	813	29	2		2	PRAMEF10	1	12954599	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09		12954599	236296022	1	12558										
MACF1	0	genome.wustl.edu	37	chr1	39916733	39916733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcatttctcaggcagcacaaGttggaggaagccctgctctt	11	11	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	39916733	39916733	G	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.14091	p.K4697N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	353	0	0	73	58	44.27	-	-	-	T	39916733	G	T	39916733	3	4	207	1	0	0	0	0	1	0	0	0	9211	1020	36	4	20564	4	MACF1	1	39916733	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	26962134	39916733	209333888	2	12559										
CC2D1B	0	genome.wustl.edu	37	chr1	52824025	52824025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cgtcctcgtctttatcagccGgggctgaatcctctgcagag	11	13	3	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	52824025	52824025	G	A	SNP	CC2D1B	ENST00000371586	human	ensembl	69_37n	-1	known	missense	c.1439	p.P480L	0.016	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1B	HGNC	ENSG00000154222	78	0	0	13	6	31.58	-	-	-	A	52824025	G	A	52824025	3	1	207	1	0	0	0	0	1	0	0	0	2752	1116	39	1	1185	1	CC2D1B	1	52824025	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	12907292	52824025	196426596	3	12560										
BRDT	0	genome.wustl.edu	37	chr1	92443818	92443818	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gctacaagtacaatcctccaGatcacgaagttgtgacaatg	8	10	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	92443818	92443818	G	A	SNP	BRDT	ENST00000362005	human	ensembl	69_37n	1	known	missense	c.1063	p.D355N	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	211	0	0	32	34	51.52	-	-	-	A	92443818	G	A	92443818	3	1	207	1	0	0	0	0	1	0	0	0	1516	942	33	2	1085	2	BRDT	1	92443818	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	39619793	92443818	156806803	4	12561										
MTF2	0	genome.wustl.edu	37	chr1	93599740	93599740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aactacctcgtctagcatttCcaggcattatgggtagatat	8	9	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	93599740	93599740	C	G	SNP	MTF2	ENST00000370298	human	ensembl	69_37n	1	known	missense	c.1412	p.S471C	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	392	0	0	81	54	39.71	-	-	-	G	93599740	C	G	93599740	3	3	207	1	0	0	0	0	1	0	0	0	9995	855	30	2	1466	2	MTF2	1	93599740	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1155922	93599740	155650881	5	12562										
ABCA4	0	genome.wustl.edu	37	chr1	94577116	94577116	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agcattcctgctgagggcatCgccttgttggggaaatggcc	14	10	0	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	94577116	94577116	C	T	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.180	p.A60	0.986	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	99	0	0	24	14	36.84	-	-	-	T	94577116	C	T	94577116	2	4	207	1	0	0	0	0	0	0	0	1	34	871	31	1		1	ABCA4	1	94577116	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	977376	94577116	154673505	6	12563										
GOLPH3L	0	genome.wustl.edu	37	chr1	150621202	150621202	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tttctcagctggtactgtaaTttgaaggggttccaggtctc	11	8	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	150621202	150621202	T	C	SNP	GOLPH3L	ENST00000271732	human	ensembl	69_37n	-1	known	silent	c.453	p.K151	1.000	pfam_GPP34	pfam_GPP34	-	no_errors	GOLPH3L	HGNC	ENSG00000143457	241	0	0	121	26	17.69	-	-	-	C	150621202	T	C	150621202	2	2	207	1	0	0	0	0	0	0	0	1	6618	1490	52	5		5	GOLPH3L	1	150621202	Silent	SNP	T	TCGA-A8-A094-01A-11W-A019-09	56044086	150621202	98629419	7	12564										
LINGO4	0	genome.wustl.edu	37	chr1	151773745	151773745	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ccacacagacataggcccctCtgtcccgtagctgcactgag	9	16	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	151773745	151773745	C	T	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479K	0.895	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	379	0	0	119	56	32	-	-	-	T	151773745	C	T	151773745	3	4	207	1	0	0	0	0	1	0	0	0	8873	913	32	2	349	2	LINGO4	1	151773745	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1152543	151773745	97476876	8	12565										
RPTN	0	genome.wustl.edu	37	chr1	152129240	152129240	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcctgtgtttcctgggaacTtacagtcttgtgctccttcc	9	12	1	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	152129240	152129240	T	C	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.335	p.K112R	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	1214	1	0.08	358	190	34.61	-	-	-	C	152129240	T	C	152129240	3	2	207	1	0	0	0	0	1	0	0	0	13750	1609	56	5	2023	5	RPTN	1	152129240	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	355495	152129240	97121381	9	12566										
C1orf85	0	genome.wustl.edu	37	chr1	156264264	156264264	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aatgaatcagtgatgttgttCcaagagaaatcggccaagga	11	6	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	156264264	156264264	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	69_37n	-1	known	nonsense	c.471	p.W157*	1.000	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715	97	0	0	55	14	20	-	-	-	T	156264264	C	T	156264264	4	4	207	1	0	0	0	0	0	1	0	0	2082	856	30	2	765	2	C1orf85	1	156264264	Nonsense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	4135024	156264264	92986357	10	12567										
ATP1A4	0	genome.wustl.edu	37	chr1	160121908	160121908	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agacctaaaaaagggcttatCaagaaaaaaatggtgaagag	10	4	1	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	160121908	160121908	C	G	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.78	p.I26M	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	176	1	0.56	57	27	31.76	-	-	-	G	160121908	C	G	160121908	3	3	207	1	0	0	0	0	1	0	0	0	1135	816	29	2	80	2	ATP1A4	1	160121908	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	3857644	160121908	89128713	11	12568										
ATF6	0	genome.wustl.edu	37	chr1	161771862	161771862	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gccagacggttttgctgtctCagcctactgtggtacaactt	10	11	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	161771862	161771862	C	T	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	nonsense	c.709	p.Q237*	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	377	0	0	99	41	29.29	-	-	-	T	161771862	C	T	161771862	4	4	207	1	0	0	0	0	0	1	0	0	1088	827	29	2	735	2	ATF6	1	161771862	Nonsense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1649954	161771862	87478759	12	12569										
MAEL	0	genome.wustl.edu	37	chr1	166985513	166985513	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgtgctttagctgtttgcaaGaagattgcgtaagttgggga	14	4	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	166985513	166985513	G	A	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	silent	c.900	p.K300	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	373	0	0	126	32	20.25	-	-	-	A	166985513	G	A	166985513	2	1	207	1	0	0	0	0	0	0	0	1	9221	933	33	2		2	MAEL	1	166985513	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	5213651	166985513	82265108	13	12570										
METTL13	0	genome.wustl.edu	37	chr1	171765635	171765635	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cctataggtgtttttattctCaaccttgtgtgccgagactt	8	9	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	171765635	171765635	C	T	SNP	METTL13	ENST00000361735	human	ensembl	69_37n	1	known	silent	c.1839	p.L613	0.988	pfam_Spermidine/spermine_synthase	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165	508	0	0	163	81	32.79	-	-	-	T	171765635	C	T	171765635	2	4	207	1	0	0	0	0	0	0	0	1	9568	813	29	2		2	METTL13	1	171765635	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	4780122	171765635	77484986	14	12571										
GLT25D2	0	genome.wustl.edu	37	chr1	183938428	183938428	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcctgctggagaaggcaaaGacaatgatgtcatcaaaggt	12	7	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	183938428	183938428	G	C	SNP	GLT25D2	ENST00000361927	human	ensembl	69_37n	-1	known	silent	c.807	p.V269	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	GLT25D2	HGNC	ENSG00000198756	193	0	0	48	22	31.43	-	-	-	C	183938428	G	C	183938428	2	2	207	1	0	0	0	0	0	0	0	1	6519	929	33	2		2	GLT25D2	1	183938428	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	12172793	183938428	65312193	15	12572										
FAM5C	0	genome.wustl.edu	37	chr1	190234086	190234086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagcggctagctgatgtagcGtctccagagtgaccgaagag	14	9	1	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	190234086	190234086	G	A	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.527	p.T176M	0.997	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	188	0	0	77	20	20.41	-	-	-	A	190234086	G	A	190234086	3	1	207	1	0	0	0	0	1	0	0	0	5639	1145	40	1	1793	1	FAM5C	1	190234086	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	6295658	190234086	59016535	16	12573										
SYT2	0	genome.wustl.edu	37	chr1	202571103	202571103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcataggcacctttacctctCcaatgatgtcatgtttggag	8	10	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	202571103	202571103	C	G	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	missense	c.716	p.G239A	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	365	1	0.27	129	54	29.51	-	-	-	G	202571103	C	G	202571103	3	3	207	1	0	0	0	0	1	0	0	0	15566	855	30	2	559	2	SYT2	1	202571103	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	12337017	202571103	46679518	17	12574										
SLC26A9	0	genome.wustl.edu	37	chr1	205904876	205904876	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtatgtccggtccttcttctCaaactcatcgtcgaagaggg	10	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	205904876	205904876	C	G	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.73	p.E25Q	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	193	0	0	60	36	37.5	-	-	-	G	205904876	C	G	205904876	3	3	207	1	0	0	0	0	1	0	0	0	14613	835	29	2	2678	2	SLC26A9	1	205904876	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	3333773	205904876	43345745	18	12575										
SLC26A9	0	genome.wustl.edu	37	chr1	205904946	205904946	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tagcggggcctgggctggctCatatctggggcatttacaag	15	9	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	205904946	205904946	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	129	0	0	28	22	44	-	-	-	T	205904946	C	T	205904946	3	4	207	1	0	0	0	0	1	0	0	0	14613	826	29	2	2748	2	SLC26A9	1	205904946	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	70	205904946	43345675	19	12576										
OBSCN	0	genome.wustl.edu	37	chr1	228491624	228491625	+	Frame_Shift_Del	DEL	AC	AC	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggcaggagagaacctcagctAcactcactgtcaggggtaaa							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	228491624	228491625	AC	-	DEL	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	frame_shift_del	c.4057_4058	p.L1354fs	0.004:0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	197	0	0	74	41	34.75	-	-	-	-	228491625	AC	-	228491624	7	5	207	1	0	1	0	1	0	0	0	0	10885	406	14	0		0	OBSCN	1	228491624	Frame_Shift_Del	DEL	AC	TCGA-A8-A094-01A-11W-A019-09	22586678	228491624	20758997	20	12577										
HEATR1	0	genome.wustl.edu	37	chr1	236748383	236748383	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tctgcaacaaactgaagactCttatcgcaaatggaaagtgg	9	8	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	236748383	236748383	C	T	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.2183	p.R728K	0.989	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	259	0	0	84	43	33.86	-	-	-	T	236748383	C	T	236748383	3	4	207	1	0	0	0	0	1	0	0	0	7078	913	32	2	4367	2	HEATR1	1	236748383	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	8256759	236748383	12502238	21	12578										
ZP4	0	genome.wustl.edu	37	chr1	238046042	238046042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cctccctcttggatacttacGgagcttttctggagggtcct	10	12	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	1	238046042	238046042	G	A	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.1495	p.R499C	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	144	0	0	45	27	37.5	-	-	-	A	238046042	G	A	238046042	3	1	207	1	0	0	0	0	1	0	0	0	18311	1130	39	1	135	1	ZP4	1	238046042	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	1297659	238046042	11204579	22	12579										
SMC6	0	genome.wustl.edu	37	chr2	17906553	17906556	+	Frame_Shift_Del	DEL	TTCT	TTCT	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttgatgtatctgctcctttgTtctttctttcgtttccataa							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	TTCT	TTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	17906553	17906556	TTCT	-	DEL	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	frame_shift_del	c.775_772	p.R258fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	109	0	0	46	16	25.81	-	-	-	-	17906556	TTCT	-	17906553	7	5	207	1	0	1	0	1	0	0	0	0	14876	1725	60	0	2658	0	SMC6	2	17906553	Frame_Shift_Del	DEL	TTCT	TCGA-A8-A094-01A-11W-A019-09		17906553	225292820	23	12580										
FAM179A	0	genome.wustl.edu	37	chr2	29268249	29268249	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtttcctgagtggccgtgcgGtgctggatgtcacagatcgc	15	10	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	29268249	29268249	G	T	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.2695	p.V899L	0.005	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	158	0	0	54	16	22.86	-	-	-	T	29268249	G	T	29268249	3	4	207	1	0	0	0	0	1	0	0	0	5545	1261	44	4	2765	4	FAM179A	2	29268249	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	11361696	29268249	213931124	24	12581										
C2orf71	0	genome.wustl.edu	37	chr2	29296746	29296746	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	actctcatctccagaaaagtCtgccccttgtgatccatggg	8	13	3	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	29296746	29296746	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.382	p.D128N	0.002	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	306	0	0	118	36	23.38	-	-	-	T	29296746	C	T	29296746	3	4	207	1	0	0	0	0	1	0	0	0	2211	913	32	2	3492	2	C2orf71	2	29296746	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	28497	29296746	213902627	25	12582										
NLRC4	0	genome.wustl.edu	37	chr2	32475388	32475388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gaaagtccgagaaggcagccGtgttgatacactgctgcgag	14	9	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	32475388	32475388	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	silent	c.1545	p.H515	0.052	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	283	0	0	109	48	30.57	-	-	-	A	32475388	G	A	32475388	2	1	207	1	0	0	0	0	0	0	0	1	10541	1136	40	1		1	NLRC4	2	32475388	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	3178642	32475388	210723985	26	12583										
CCT4	0	genome.wustl.edu	37	chr2	62104097	62104097	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	caaaactgaataagcccaatCttggccttttcaactctggt	6	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	62104097	62104097	C	T	SNP	CCT4	ENST00000394440	human	ensembl	69_37n	-1	known	silent	c.735	p.K245	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484	325	0	0	106	48	30.97	-	-	-	T	62104097	C	T	62104097	2	4	207	1	0	0	0	0	0	0	0	1	2984	912	32	2		2	CCT4	2	62104097	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	29628709	62104097	181095276	27	12584										
SLC4A5	0	genome.wustl.edu	37	chr2	74452135	74452135	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cccaggatctgtggtggagaGagactaaagttttgtgagaa	14	5	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	74452135	74452135	G	C	SNP	SLC4A5	ENST00000425249	human	ensembl	69_37n	-1	novel	missense	c.2801	p.S934C	0.001	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_stop_codon:bad_bp_length_for_coding_region	SLC4A5	HGNC	ENSG00000188687	189	0	0	78	42	35	-	-	-	C	74452135	G	C	74452135	3	2	207	1	0	0	0	0	1	0	0	0	14746	957	33	2		2	SLC4A5	2	74452135	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	12348038	74452135	168747238	28	12585										
C2orf68	0	genome.wustl.edu	37	chr2	85836560	85836560	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgtttccaccaggcgtacctGatagacgataactgatgtga	10	9	0	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	85836560	85836560	G	A	SNP	C2orf68	ENST00000306336	human	ensembl	69_37n	-1	known	nonsense	c.376	p.Q126*	1.000	pfam_UPF0561	pfam_UPF0561	-	no_errors	C2orf68	HGNC	ENSG00000168887	233	0	0	59	27	31.4	-	-	-	A	85836560	G	A	85836560	4	1	207	1	0	0	0	0	0	1	0	0	2207	1299	45	2	132	2	C2orf68	2	85836560	Nonsense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	11384425	85836560	157362813	29	12586										
MRPS9	0	genome.wustl.edu	37	chr2	105665628	105665628	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tccatctatattttctgttaGatattaaggctaagacatac	5	7	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	105665628	105665628	G	C	SNP	MRPS9	ENST00000258455	human	ensembl	69_37n	1	known	splice_site	c.136-1	e2-1	1.000	-	-	-	no_errors	MRPS9	HGNC	ENSG00000135972	318	0	0	101	21	17.21	-	-	-	C	105665628	G	C	105665628	5	2	207	1	0	0	0	0	0	0	1	0	9921	956	33	2	141	2	MRPS9	2	105665628	Splice_Site	SNP	G	TCGA-A8-A094-01A-11W-A019-09	19829068	105665628	137533745	30	12587										
TMEM87B	0	genome.wustl.edu	37	chr2	112873718	112873718	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tctcttcagaaaagataatgTgattggaacccgtataagaa	8	6	2	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	112873718	112873718	T	C	SNP	TMEM87B	ENST00000283206	human	ensembl	69_37n	1	known	nonstop	c.1666	p.*556R	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214	92	0	0	19	8	29.63	-	-	-	C	112873718	T	C	112873718	4	2	207	1	0	0	0	0	0	0	0	0	16306	1709	59	5	1740	5	TMEM87B	2	112873718	Nonstop_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	7208090	112873718	130325655	31	12588										
ZRANB3	0	genome.wustl.edu	37	chr2	135988439	135988439	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cacaggaggtcatcaactgtCtttttttaggttgtggtaca	10	7	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	135988439	135988439	C	A	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.1598	p.R533I	0.014	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	321	0	0	136	61	30.96	-	-	-	A	135988439	C	A	135988439	3	1	207	1	0	0	0	0	1	0	0	0	18317	913	32	2	1677	2	ZRANB3	2	135988439	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	23114721	135988439	107210934	32	12589										
GLB1L	0	genome.wustl.edu	37	chr2	220104395	220104395	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cagccagcctgtgtagtactCagagtttacctagagtgtga	11	9	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	220104395	220104395	C	T	SNP	GLB1L	ENST00000295759	human	ensembl	69_37n	-1	known	missense	c.790	p.E264K	1.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L	HGNC	ENSG00000163521	336	0	0	116	16	12.03	-	-	-	T	220104395	C	T	220104395	3	4	207	1	0	0	0	0	1	0	0	0	6480	835	29	2	1210	2	GLB1L	2	220104395	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	84115956	220104395	23094978	33	12590										
EPHA4	0	genome.wustl.edu	37	chr2	222365820	222365820	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aggtggctccttcccagacaGagtagctgtggggtgggcac	16	10	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	2	222365820	222365820	G	C	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	missense	c.896	p.S299C	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	177	0	0	60	30	32.97	-	-	-	C	222365820	G	C	222365820	3	2	207	1	0	0	0	0	1	0	0	0	5206	942	33	2	2120	2	EPHA4	2	222365820	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2261425	222365820	20833553	34	12591										
TRNT1	0	genome.wustl.edu	37	chr3	3189137	3189137	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcttttgtccctacaggttTacctgctaatgcaagtttag	8	9	0	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	3189137	3189137	T	C	SNP	TRNT1	ENST00000251607	human	ensembl	69_37n	1	known	missense	c.806	p.L269S	0.984	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756	380	0	0	180	43	19.2	-	-	-	C	3189137	T	C	3189137	3	2	207	1	0	0	0	0	1	0	0	0	16669	1764	61	5	828	5	TRNT1	3	3189137	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09		3189137	194833293	35	12592										
WNT7A	0	genome.wustl.edu	37	chr3	13860570	13860570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttgtagccacgcccacagcaCatgaggtcacagccgctggc	11	15	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	13860570	13860570	C	A	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	missense	c.921	p.M307I	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	44	0	0	34	10	22.73	-	-	-	A	13860570	C	A	13860570	3	1	207	1	0	0	0	0	1	0	0	0	17491	478	17	4	132	4	WNT7A	3	13860570	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	10671433	13860570	184161860	36	12593										
BTD	0	genome.wustl.edu	37	chr3	15686759	15686759	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ccctggtcaggtgtgggggtCttggcttcgacacctgtgga	16	10	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	15686759	15686759	C	G	SNP	BTD	ENST00000303498	human	ensembl	69_37n	1	known	missense	c.1396	p.L466V	0.000	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814	268	0	0	97	33	25.38	-	-	-	G	15686759	C	G	15686759	3	3	207	1	0	0	0	0	1	0	0	0	1559	913	32	2	1410	2	BTD	3	15686759	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1826189	15686759	182335671	37	12594										
ANO10	0	genome.wustl.edu	37	chr3	43640099	43640099	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atctttagctctaagattttCaagttcatgtttgataatga	6	5	4	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	43640099	43640099	C	G	SNP	ANO10	ENST00000292246	human	ensembl	69_37n	-1	known	missense	c.397	p.E133Q	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	294	0	0	103	38	26.95	-	-	-	G	43640099	C	G	43640099	3	3	207	1	0	0	0	0	1	0	0	0	695	835	29	2	1625	2	ANO10	3	43640099	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	27953340	43640099	154382331	38	12595										
BSN	0	genome.wustl.edu	37	chr3	49695519	49695519	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agacgctgcctcgccccatgAagaccctgcagcggtccctg	11	17	0	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	49695519	49695519	A	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	nonsense	c.8530	p.K2844*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	69	0	0	8	5	38.46	-	-	-	T	49695519	A	T	49695519	4	4	207	1	0	0	0	0	0	1	0	0	1538	247	9	5	8548	5	BSN	3	49695519	Nonsense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	6055420	49695519	148326911	39	12596										
SIDT1	0	genome.wustl.edu	37	chr3	113302310	113302310	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tatttgtgataaagcctgaaGattatgcctgtggaggatct	11	5	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	113302310	113302310	G	C	SNP	SIDT1	ENST00000393830	human	ensembl	69_37n	1	known	missense	c.802	p.D268H	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	158	0	0	35	11	23.91	-	-	-	C	113302310	G	C	113302310	3	2	207	1	0	0	0	0	1	0	0	0	14391	942	33	2	828	2	SIDT1	3	113302310	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	63606791	113302310	84720120	40	12597										
ROPN1	0	genome.wustl.edu	37	chr3	123694377	123694377	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cctctgcacggatgatcagtCtgccagcaacctgcagggca	11	14	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	123694377	123694377	C	T	SNP	ROPN1	ENST00000184183	human	ensembl	69_37n	-1	known	missense	c.245	p.R82K	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1	HGNC	ENSG00000065371	98	0	0	24	17	41.46	-	-	-	T	123694377	C	T	123694377	3	4	207	1	0	0	0	0	1	0	0	0	13609	913	32	2	405	2	ROPN1	3	123694377	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	10392067	123694377	74328053	41	12598										
SMC4	0	genome.wustl.edu	37	chr3	160119723	160119723	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agactgcaagtgaggaacttGataatagaagtttagaagag	12	3	0	6			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	3	160119723	160119723	G	C	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.160	p.D54H	0.990	NULL	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	250	0	0	48	30	38.46	-	-	-	C	160119723	G	C	160119723	3	2	207	1	0	0	0	0	1	0	0	0	14874	1290	45	2	166	2	SMC4	3	160119723	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	36425346	160119723	37902707	42	12599										
SLAIN2	0	genome.wustl.edu	37	chr4	48371964	48371964	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggattacccaagtcctgatgTtgagtgtgctaaaaaatctc	9	8	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	48371964	48371964	T	C	SNP	SLAIN2	ENST00000264313	human	ensembl	69_37n	1	known	missense	c.488	p.V163A	1.000	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171	305	0	0	57	43	43	-	-	-	C	48371964	T	C	48371964	3	2	207	1	0	0	0	0	1	0	0	0	14455	1725	60	5	494	5	SLAIN2	4	48371964	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09		48371964	142782312	43	12600										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68784731	68784731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aatcctgtgatgtggacagtCaaatttggttggaaggatgc	13	5	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	68784731	68784731	C	G	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	missense	c.921	p.L307F	0.006	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	302	0	0	136	34	19.88	-	-	-	G	68784731	C	G	68784731	3	3	207	1	0	0	0	0	1	0	0	0	16334	825	29	2	356	2	TMPRSS11A	4	68784731	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	20412767	68784731	122369545	44	12601										
MRPL1	0	genome.wustl.edu	37	chr4	78873708	78873708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtttattactgaagattgatCcattgttgcctaaagaagta	8	5	0	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	78873708	78873708	C	T	SNP	MRPL1	ENST00000315567	human	ensembl	69_37n	1	known	missense	c.925	p.P309S	0.005	superfamily_Ribosomal_L1_SF	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF,tigrfam_Ribosomal_L1_mit	-	no_errors	MRPL1	HGNC	ENSG00000169288	242	0	0	74	25	25.25	-	-	-	T	78873708	C	T	78873708	3	4	207	1	0	0	0	0	1	0	0	0	9846	855	30	2	959	2	MRPL1	4	78873708	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	10088977	78873708	112280568	45	12602										
FGF5	0	genome.wustl.edu	37	chr4	81188146	81188146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agcagtagcgctatgtcttcCtcttctgcctcctcctcccc	6	18	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	81188146	81188146	C	T	SNP	FGF5	ENST00000312465	human	ensembl	69_37n	1	known	silent	c.168	p.S56	0.304	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF5	HGNC	ENSG00000138675	156	0	0	63	12	16	-	-	-	T	81188146	C	T	81188146	2	4	207	1	0	0	0	0	0	0	0	1	5901	668	24	4		4	FGF5	4	81188146	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	2314438	81188146	109966130	46	12603										
LIN54	0	genome.wustl.edu	37	chr4	83849430	83849430	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tacatgtggcttcagctactTccttagttacaaatgtaaat	6	8	1	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	83849430	83849430	T	C	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.2075	p.E692G	1.000	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	219	0	0	72	23	23.96	-	-	-	C	83849430	T	C	83849430	3	2	207	1	0	0	0	0	1	0	0	0	8865	1783	62	5	178	5	LIN54	4	83849430	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	2661284	83849430	107304846	47	12604										
PDE5A	0	genome.wustl.edu	37	chr4	120432238	120432238	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atcaggcactggtcaaaatgAtggtgttccatgattgaatg	11	6	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	4	120432238	120432238	A	G	SNP	PDE5A	ENST00000503412	human	ensembl	69_37n	-1	putative	missense	c.107	p.I36T	0.996	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,prints_PDEase	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PDE5A	HGNC	ENSG00000138735	586	0	0	136	26	15.95	-	-	-	G	120432238	A	G	120432238	3	3	207	1	0	0	0	0	1	0	0	0	11717	330	12	5	603	5	PDE5A	4	120432238	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	36582808	120432238	70722038	48	12605										
ADAMTS12	0	genome.wustl.edu	37	chr5	33576371	33576371	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgagggttctggctggtggtCtcctcccagagggagcagag	17	9	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	33576371	33576371	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.3760	p.D1254N	0.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	609	1	0.16	222	83	27.21	-	-	-	T	33576371	C	T	33576371	3	4	207	1	0	0	0	0	1	0	0	0	257	913	32	2	1048	2	ADAMTS12	5	33576371	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		33576371	147338889	49	12606										
SPEF2	0	genome.wustl.edu	37	chr5	35740104	35740104	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaaacagtactcaggcatctGagggaagaccagcatactgt	10	9	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	35740104	35740104	G	A	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	silent	c.3147	p.L1049	0.947	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	572	0	0	262	100	27.4	-	-	-	A	35740104	G	A	35740104	2	1	207	1	0	0	0	0	0	0	0	1	15126	1277	45	2		2	SPEF2	5	35740104	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2163733	35740104	145175156	50	12607										
ITGA2	0	genome.wustl.edu	37	chr5	52363035	52363035	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagaatgctcagataattctCaaactctgcttcagtgcaaa	6	9	4	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	52363035	52363035	C	T	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	silent	c.2031	p.L677	0.081	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	239	0	0	64	14	17.95	-	-	-	T	52363035	C	T	52363035	2	4	207	1	0	0	0	0	0	0	0	1	7929	813	29	2		2	ITGA2	5	52363035	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	16622931	52363035	128552225	51	12608										
BDP1	0	genome.wustl.edu	37	chr5	70806172	70806172	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cagaggtgattgatgccattGaggaaatagagatagatttg	13	3	0	6			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	70806172	70806172	G	A	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.3253	p.E1085K	0.003	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	499	1	0.2	199	79	28.42	-	-	-	A	70806172	G	A	70806172	3	1	207	1	0	0	0	0	1	0	0	0	1399	1291	45	2	3319	2	BDP1	5	70806172	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	18443137	70806172	110109088	52	12609										
ARRDC3	0	genome.wustl.edu	37	chr5	90669934	90669934	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtgtattatcaaattaccttCaggtctttcaggaagtgata	8	6	4	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	90669934	90669934	C	T	SNP	ARRDC3	ENST00000265138	human	ensembl	69_37n	-1	known	missense	c.1030	p.E344K	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369	384	0	0	50	31	37.8	-	-	-	T	90669934	C	T	90669934	3	4	207	1	0	0	0	0	1	0	0	0	988	835	29	2	226	2	ARRDC3	5	90669934	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	19863762	90669934	90245326	53	12610										
PCDHB4	0	genome.wustl.edu	37	chr5	140503220	140503220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gagcagcgaggcgctggtgcGcgtgctggtgctggacacca	18	11	0	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	140503220	140503220	G	A	SNP	PCDHB4	ENST00000194152	human	ensembl	69_37n	1	known	missense	c.1640	p.R547H	0.696	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	132	0	0	47	10	17.54	-	-	-	A	140503220	G	A	140503220	3	1	207	1	0	0	0	0	1	0	0	0	11617	1087	38	1	1642	1	PCDHB4	5	140503220	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	49833286	140503220	40412040	54	12611										
PCDHB12	0	genome.wustl.edu	37	chr5	140588724	140588724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcagctggacacaaacactgGggatttgctcctgagagaaa	12	9	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	140588724	140588724	G	C	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.245	p.G82A	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	274	0	0	95	20	17.39	-	-	-	C	140588724	G	C	140588724	3	2	207	1	0	0	0	0	1	0	0	0	11610	1232	43	4	247	4	PCDHB12	5	140588724	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	85504	140588724	40326536	55	12612										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789141	140789141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttttcgaccagacgtcctacGtggtccacgtggccgagaac	11	13	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	140789141	140789141	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.1372	p.V458M	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	89	0	0	21	10	32.26	-	-	-	A	140789141	G	A	140789141	3	1	207	1	0	0	0	0	1	0	0	0	11640	1145	40	1	1374	1	PCDHGB6	5	140789141	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	200417	140789141	40126119	56	12613										
PCDHGA10	0	genome.wustl.edu	37	chr5	140795061	140795061	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcgcgaaagagtcacctgatCttcccccagcccaattatgc	7	15	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	140795061	140795061	C	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	69_37n	1	known	silent	c.2319	p.I773	0.999	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846	184	0	0	61	7	10.29	-	-	-	A	140795061	C	A	140795061	2	1	207	1	0	0	0	0	0	0	0	1	11624	903	32	2		2	PCDHGA10	5	140795061	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	5920	140795061	40120199	57	12614										
LARP1	0	genome.wustl.edu	37	chr5	154185485	154185485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tacagttggcagctatggctGtacccctcagtcattgccca	9	13	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	5	154185485	154185485	G	T	SNP	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	missense	c.2360	p.C787F	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	374	1	0.27	132	40	23.12	-	-	-	T	154185485	G	T	154185485	3	4	207	1	0	0	0	0	1	0	0	0	8682	1377	48	4	2418	4	LARP1	5	154185485	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	13390424	154185485	26729775	58	12615										
DSP	0	genome.wustl.edu	37	chr6	7567629	7567629	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cgcagtggagttggattcttCagatcaccaagtgcattgat	11	8	3	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	6	7567629	7567629	C	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	nonsense	c.1087	p.Q363*	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	229	0	0	129	51	28.33	-	-	-	T	7567629	C	T	7567629	4	4	207	1	0	0	0	0	0	1	0	0	4816	827	29	2	1121	2	DSP	6	7567629	Nonsense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		7567629	163547438	59	12616										
WASF1	0	genome.wustl.edu	37	chr6	110426631	110426631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttgtttcaaaatgagaggctGggccattagcaacttcaata	9	7	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	6	110426631	110426631	G	T	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.692	p.P231Q	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	378	1	0.26	118	108	47.58	-	-	-	T	110426631	G	T	110426631	3	4	207	1	0	0	0	0	1	0	0	0	17349	1348	47	4	1003	4	WASF1	6	110426631	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	102859002	110426631	60688436	60	12617										
UTRN	0	genome.wustl.edu	37	chr6	144835162	144835162	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaccaacaagtaaacaggaaGaaattgtgaaggtagcaaac	9	6	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	6	144835162	144835162	G	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.5062	p.E1688Q	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	574	1	0.17	266	56	17.34	-	-	-	C	144835162	G	C	144835162	3	2	207	1	0	0	0	0	1	0	0	0	17200	943	33	2	5200	2	UTRN	6	144835162	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	34408531	144835162	26279905	61	12618										
MPP6	0	genome.wustl.edu	37	chr7	24681452	24681452	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atgtggatgaaaatgtggcaGaattggttggtatactcaaa	12	3	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	24681452	24681452	G	A	SNP	MPP6	ENST00000222644	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	1.000	pfam_L27_C,smart_L27,pfscan_L27	pfam_Guanylate_kin,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP6	HGNC	ENSG00000105926	442	1	0.23	166	57	25.56	-	-	-	A	24681452	G	A	24681452	3	1	207	1	0	0	0	0	1	0	0	0	9810	943	33	2	241	2	MPP6	7	24681452	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09		24681452	134457211	62	12619										
CCT6A	0	genome.wustl.edu	37	chr7	56128610	56128610	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttggagtccaagcatttgctGatgcattgctcattattccc	8	10	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	56128610	56128610	G	A	SNP	CCT6A	ENST00000275603	human	ensembl	69_37n	1	known	missense	c.1324	p.D442N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731	121	0	0	61	24	28.24	-	-	-	A	56128610	G	A	56128610	3	1	207	1	0	0	0	0	1	0	0	0	2986	1290	45	2	1366	2	CCT6A	7	56128610	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	31447158	56128610	103010053	63	12620										
KIAA1324L	0	genome.wustl.edu	37	chr7	86547849	86547849	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aacccgtggctccagtcataGatgttggtggtctatttgac	11	9	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	86547849	86547849	G	C	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.1502	p.S501C	1.000	superfamily_Growth_fac_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	679	0	0	159	64	28.57	-	-	-	C	86547849	G	C	86547849	3	2	207	1	0	0	0	0	1	0	0	0	8276	942	33	2	1631	2	KIAA1324L	7	86547849	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	30419239	86547849	72590814	64	12621										
CCDC132	0	genome.wustl.edu	37	chr7	92979203	92979203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcagacagtctcaaccgccaGtgaactacggaaaccaattt	7	12	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	92979203	92979203	G	T	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	missense	c.2321	p.S774I	1.000	pfam_DUF2451_C	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	471	0	0	139	40	22.22	-	-	-	T	92979203	G	T	92979203	3	4	207	1	0	0	0	0	1	0	0	0	2792	1029	36	4	2461	4	CCDC132	7	92979203	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	6431354	92979203	66159460	65	12622										
PPP1R9A	0	genome.wustl.edu	37	chr7	94917854	94917854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cattcctatcttagatccttGatgatggacagtctcccaaa	6	11	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	94917854	94917854	G	A	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	missense	c.3502	p.D1168N	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	267	0	0	95	31	24.6	-	-	-	A	94917854	G	A	94917854	3	1	207	1	0	0	0	0	1	0	0	0	12455	1290	45	2	3834	2	PPP1R9A	7	94917854	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	1938651	94917854	64220809	66	12623										
FBXL13	0	genome.wustl.edu	37	chr7	102665560	102665560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aatgtcacattttagagtctCatctacaagaaagacttcag	6	8	4	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	102665560	102665560	C	T	SNP	FBXL13	ENST00000313221	human	ensembl	69_37n	-1	known	missense	c.445	p.E149K	0.000	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL13	HGNC	ENSG00000161040	216	0	0	66	15	18.52	-	-	-	T	102665560	C	T	102665560	3	4	207	1	0	0	0	0	1	0	0	0	5755	835	29	2	1822	2	FBXL13	7	102665560	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	7747706	102665560	56473103	67	12624										
RBM33	0	genome.wustl.edu	37	chr7	155473535	155473535	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agaatatgtggaagagccagAggaggagcagctttacactg	14	6	0	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	7	155473535	155473535	A	G	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.500	p.E167G	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	240	0	0	79	20	20.2	-	-	-	G	155473535	A	G	155473535	3	3	207	1	0	0	0	0	1	0	0	0	13213	304	11	5	518	5	RBM33	7	155473535	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	52807975	155473535	3665128	68	12625										
MYOM2	0	genome.wustl.edu	37	chr8	2000312	2000312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcatcttcccagaagtccttGagtcagcggtcgtcttcaca	9	13	4	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	2000312	2000312	G	C	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.144	p.L48F	0.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	337	0	0	121	28	18.79	-	-	-	C	2000312	G	C	2000312	3	2	207	1	0	0	0	0	1	0	0	0	10164	1281	45	2	150	2	MYOM2	8	2000312	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09		2000312	144363710	69	12626										
EGR3	0	genome.wustl.edu	37	chr8	22548604	22548604	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gggaagagattgctgtccaaCgccggcttggccgattggta	15	9	0	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	22548604	22548604	C	T	SNP	EGR3	ENST00000317216	human	ensembl	69_37n	-1	known	silent	c.546	p.A182	0.961	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388	51	0	0	8	5	38.46	-	-	-	T	22548604	C	T	22548604	2	4	207	1	0	0	0	0	0	0	0	1	5008	523	19	1		1	EGR3	8	22548604	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	20548292	22548604	123815418	70	12627										
MOS	0	genome.wustl.edu	37	chr8	57025782	57025782	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggctttaggcgtcacgccctCtcctttcaggagctccgggg	13	14	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	57025782	57025782	C	G	SNP	MOS	ENST00000311923	human	ensembl	69_37n	-1	known	missense	c.760	p.E254Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MOS	HGNC	ENSG00000172680	53	0	0	20	6	23.08	-	-	-	G	57025782	C	G	57025782	3	3	207	1	0	0	0	0	1	0	0	0	9784	922	32	2	283	2	MOS	8	57025782	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	34477178	57025782	89338240	71	12628										
RRS1	0	genome.wustl.edu	37	chr8	67342428	67342430	+	In_Frame_Del	DEL	AGG	AGG	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggcttgggtggcaagagaaaAggaggacagcgcccaggagg							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	67342428	67342430	AGG	-	DEL	RRS1	ENST00000320270	human	ensembl	69_37n	1	known	in_frame_del	c.1062_1064	p.G356in_frame_del	0.999:0.998:0.996	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041	200	0	0	73	15	17.05	-	-	-	-	67342430	AGG	-	67342428	7	5	207	1	0	1	0	1	0	0	0	0	13778	69	3	0	1064	0	RRS1	8	67342428	In_Frame_Del	DEL	AGG	TCGA-A8-A094-01A-11W-A019-09	10316646	67342428	79021594	72	12629										
TMEM67	0	genome.wustl.edu	37	chr8	94784835	94784835	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agggcatgtctttaacttcaGaatggtttgcaaagtatttg	10	5	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	94784835	94784835	G	C	SNP	TMEM67	ENST00000453321	human	ensembl	69_37n	1	known	missense	c.670	p.E224Q	1.000	pfam_Meckelin	pfam_Meckelin,superfamily_Growth_fac_rcpt	-	no_errors	TMEM67	HGNC	ENSG00000164953	423	0	0	196	47	19.18	-	-	-	C	94784835	G	C	94784835	3	2	207	1	0	0	0	0	1	0	0	0	16291	943	33	2	834	2	TMEM67	8	94784835	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	27442407	94784835	51579187	73	12630										
RIMS2	0	genome.wustl.edu	37	chr8	105010426	105010426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cttgcagtcattttcttactCtacctcgctccagatacagt	5	13	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	105010426	105010426	C	G	SNP	RIMS2	ENST00000436393	human	ensembl	69_37n	1	novel	missense	c.2392	p.L798V	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406	964	1	0.1	530	154	22.48	-	-	-	G	105010426	C	G	105010426	3	3	207	1	0	0	0	0	1	0	0	0	13454	912	32	2	3254	2	RIMS2	8	105010426	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	10225591	105010426	41353596	74	12631										
SYBU	0	genome.wustl.edu	37	chr8	110590147	110590147	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agcttggttttgaggtgtctCactgtcacctctttctgctg	10	10	4	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	110590147	110590147	C	G	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	silent	c.834	p.V278	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	485	0	0	402	46	10.22	-	-	-	G	110590147	C	G	110590147	2	3	207	1	0	0	0	0	0	0	0	1	15518	813	29	2		2	SYBU	8	110590147	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	5579721	110590147	35773875	75	12632										
COL14A1	0	genome.wustl.edu	37	chr8	121180436	121180436	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagaaaggatccaaagcccaGagtcaaagttgtggacagag	12	7	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	121180436	121180436	G	C	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.386	p.R129T	1.000	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	1154	0	0	593	123	17.18	-	-	-	C	121180436	G	C	121180436	3	2	207	1	0	0	0	0	1	0	0	0	3701	942	33	2	400	2	COL14A1	8	121180436	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	10590289	121180436	25183586	76	12633										
FAM91A1	0	genome.wustl.edu	37	chr8	124799973	124799973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atgagtctctggacagctttCttatagaactagaaaaggta	9	6	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	8	124799973	124799973	C	G	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.1261	p.L421V	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	231	0	0	105	22	17.19	-	-	-	G	124799973	C	G	124799973	3	3	207	1	0	0	0	0	1	0	0	0	5697	913	32	2	1315	2	FAM91A1	8	124799973	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	3619537	124799973	21564049	77	12634										
PTPRD	0	genome.wustl.edu	37	chr9	8449827	8449827	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gctttttctagagtcggactCtgccctcttcctataggggg	11	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	8449827	8449827	C	G	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.3886	p.E1296Q	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	525	0	0	109	57	34.34	-	-	-	G	8449827	C	G	8449827	3	3	207	1	0	0	0	0	1	0	0	0	12882	922	32	2	1950	2	PTPRD	9	8449827	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		8449827	132763604	78	12635										
GRIN3A	0	genome.wustl.edu	37	chr9	104341570	104341570	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtgctcaccaatggtggtcaAaatggacagaccaaatccaa	9	10	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	104341570	104341570	A	G	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	silent	c.2839	p.L947	1.000	prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	272	0	0	70	39	35.45	-	-	-	G	104341570	A	G	104341570	2	3	207	1	0	0	0	0	0	0	0	1	6834	11	1	5		5	GRIN3A	9	104341570	Silent	SNP	A	TCGA-A8-A094-01A-11W-A019-09	95891743	104341570	36871861	79	12636										
RC3H2	0	genome.wustl.edu	37	chr9	125618153	125618153	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttgtaccactcacactctctGagaactggttaaaaaaaaat	5	9	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	125618153	125618153	G	C	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	nonsense	c.2459	p.S820*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	172	0	0	47	10	17.24	-	-	-	C	125618153	G	C	125618153	4	2	207	1	0	0	0	0	0	1	0	0	13250	1294	45	2	1226	2	RC3H2	9	125618153	Nonsense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	21276583	125618153	15595278	80	12637										
ZBTB6	0	genome.wustl.edu	37	chr9	125673289	125673289	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cttcaagcacacagtacactGaaagggccgtatgcccatgt	9	12	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	125673289	125673289	G	A	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	nonsense	c.1063	p.Q355*	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	220	0	0	93	43	31.62	-	-	-	A	125673289	G	A	125673289	4	1	207	1	0	0	0	0	0	1	0	0	17648	1299	45	2	215	2	ZBTB6	9	125673289	Nonsense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	55136	125673289	15540142	81	12638			1	28		3	3	900	G		1.170919e-05
ZBTB6	0	genome.wustl.edu	37	chr9	125673973	125673973	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	catagaaagatcaatttccaGatactttgacaaagcttctg	6	8	2	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	125673973	125673973	G	C	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	missense	c.379	p.L127V	0.608	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	525	0	0	170	79	31.73	-	-	-	C	125673973	G	C	125673973	3	2	207	1	0	0	0	0	1	0	0	0	17648	933	33	2	899	2	ZBTB6	9	125673973	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	684	125673973	15539458	82	12639			1	28		3	3	900	G		1.170919e-05
ZBTB6	0	genome.wustl.edu	37	chr9	125674188	125674188	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	actgatctctcataaaagtgGagcaagcagccaaaatcacc	7	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	125674188	125674188	G	C	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	missense	c.164	p.S55C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	597	0	0	191	69	26.54	-	-	-	C	125674188	G	C	125674188	3	2	207	1	0	0	0	0	1	0	0	0	17648	1174	41	2	1114	2	ZBTB6	9	125674188	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	215	125674188	15539243	83	12640			1	28		3	3	900	G		1.170919e-05
ABL1	0	genome.wustl.edu	37	chr9	133753849	133753849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctacctatggcatgtcccctTacccgggaattgacctgtcc	8	15	0	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	133753849	133753849	T	C	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.1375	p.Y459H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	354	0	0	161	31	16.15	-	-	-	C	133753849	T	C	133753849	3	2	207	1	0	0	0	0	1	0	0	0	92	1754	61	5	1488	5	ABL1	9	133753849	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	8079661	133753849	7459582	84	12641										
SETX	0	genome.wustl.edu	37	chr9	135201859	135201859	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agttcaaaaacatttcatatTtccattttaagacctcttta	2	8	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	135201859	135201859	T	G	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.5126	p.K1709T	0.928	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	471	0	0	211	94	30.62	-	-	-	G	135201859	T	G	135201859	3	3	207	1	0	0	0	0	1	0	0	0	14229	1841	64	5	2975	5	SETX	9	135201859	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	1448010	135201859	6011572	85	12642										
CACNA1B	0	genome.wustl.edu	37	chr9	140880937	140880937	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tccatcatcagcctgctcttCttgctcttcctgttcattgt	5	14	6	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	9	140880937	140880937	C	G	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.1845	p.F615L	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	47	0	0	28	11	28.21	-	-	-	G	140880937	C	G	140880937	3	3	207	1	0	0	0	0	1	0	0	0	2564	912	32	2	1896	2	CACNA1B	9	140880937	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	5679078	140880937	332494	86	12643										
UPF2	0	genome.wustl.edu	37	chr10	12071466	12071466	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tttttgctacgaagttccttTcttaaatgatgtcgttccca	6	9	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	12071466	12071466	T	C	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	silent	c.423	p.R141	0.993	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	516	0	0	246	175	41.47	-	-	-	C	12071466	T	C	12071466	2	2	207	1	0	0	0	0	0	0	0	1	17101	1780	62	5		5	UPF2	10	12071466	Silent	SNP	T	TCGA-A8-A094-01A-11W-A019-09		12071466	123463281	87	12644										
TRDMT1	0	genome.wustl.edu	37	chr10	17199723	17199723	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cttttcttgaattttattttCtacatccattgcatattttt	2	7	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	17199723	17199723	C	G	SNP	TRDMT1	ENST00000377799	human	ensembl	69_37n	-1	known	missense	c.604	p.E202Q	0.004	pfam_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614	201	0	0	104	26	20	-	-	-	G	17199723	C	G	17199723	3	3	207	1	0	0	0	0	1	0	0	0	16563	922	32	2	587	2	TRDMT1	10	17199723	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	5128257	17199723	118335024	88	12645										
ANKRD26	0	genome.wustl.edu	37	chr10	27324347	27324347	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtatagcagcagccaatctaGaatggtatgattcaacttct	8	8	3	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	27324347	27324347	G	C	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.3080	p.S1027C	0.006	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	587	0	0	247	165	39.95	-	-	-	C	27324347	G	C	27324347	3	2	207	1	0	0	0	0	1	0	0	0	654	942	33	2	2144	2	ANKRD26	10	27324347	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	10124624	27324347	108210400	89	12646										
ZNF33B	0	genome.wustl.edu	37	chr10	43127865	43127865	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcacatctttaaatgatactGacccctggaacttctgatct	5	11	4	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	43127865	43127865	G	A	SNP	ZNF33B	ENST00000359467	human	ensembl	69_37n	-1	known	missense	c.32	p.S11L	0.902	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693	228	0	0	93	46	33.09	-	-	-	A	43127865	G	A	43127865	3	1	207	1	0	0	0	0	1	0	0	0	17951	1294	45	2	2316	2	ZNF33B	10	43127865	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	15803518	43127865	92406882	90	12647										
MAPK8	0	genome.wustl.edu	37	chr10	49618209	49618209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	attctgctggaattattcatCgggttagtagaagaaactat	9	5	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	49618209	49618209	C	T	SNP	MAPK8	ENST00000360332	human	ensembl	69_37n	1	known	missense	c.448	p.R150W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK8	HGNC	ENSG00000107643	990	2	0.2	430	144	25.09	-	-	-	T	49618209	C	T	49618209	3	4	207	1	0	0	0	0	1	0	0	0	9354	875	31	1	462	1	MAPK8	10	49618209	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	6490344	49618209	85916538	91	12648										
ZWINT	0	genome.wustl.edu	37	chr10	58119265	58119265	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gctgccactggttctggactGctctgcgtttctccatggcc	11	14	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	58119265	58119265	G	T	SNP	ZWINT	ENST00000373944	human	ensembl	69_37n	-1	known	missense	c.452	p.A151E	0.024	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952	236	0	0	83	17	17	-	-	-	T	58119265	G	T	58119265	3	4	207	1	0	0	0	0	1	0	0	0	18340	1319	46	4	397	4	ZWINT	10	58119265	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	8501056	58119265	77415482	92	12649										
PLA2G12B	0	genome.wustl.edu	37	chr10	74702434	74702434	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tctggtaccttgagacccagGaaataggagccgcagccatt	11	11	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	74702434	74702434	G	A	SNP	PLA2G12B	ENST00000373032	human	ensembl	69_37n	-1	known	silent	c.276	p.F92	1.000	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	-	no_errors	PLA2G12B	HGNC	ENSG00000138308	40	0	0	16	7	30.43	-	-	-	A	74702434	G	A	74702434	2	1	207	1	0	0	0	0	0	0	0	1	12065	1165	41	2		2	PLA2G12B	10	74702434	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	16583169	74702434	60832313	93	12650										
DYDC2	0	genome.wustl.edu	37	chr10	82122706	82122706	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gactctgtcacctcaccccaGaatagggaaaagaagatcca	8	12	3	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	82122706	82122706	G	C	SNP	DYDC2	ENST00000372198	human	ensembl	69_37n	1	known	splice_site	c.190-1	e3-1	0.029	-	-	-	no_errors	DYDC2	HGNC	ENSG00000133665	458	0	0	235	68	22.44	-	-	-	C	82122706	G	C	82122706	5	2	207	1	0	0	0	0	0	0	1	0	4874	956	33	2	153	2	DYDC2	10	82122706	Splice_Site	SNP	G	TCGA-A8-A094-01A-11W-A019-09	7420272	82122706	53412041	94	12651										
FAM190B	0	genome.wustl.edu	37	chr10	86273469	86273469	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctgaagcaaacttaaacattActgtaaatgctcaagagcct	6	9	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	10	86273469	86273469	A	T	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.2590	p.T864S	0.067	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	126	0	0	35	52	59.09	-	-	-	T	86273469	A	T	86273469	3	4	207	1	0	0	0	0	1	0	0	0	5564	406	14	5		5	FAM190B	10	86273469	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	4150763	86273469	49261278	95	12652										
PDE3B	0	genome.wustl.edu	37	chr11	14865386	14865386	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttctcagattctgatggtagAattaaccatgggcgaattgc	10	7	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	11	14865386	14865386	A	G	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	silent	c.2334	p.R778	0.158	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	566	0	0	192	37	16.09	-	-	-	G	14865386	A	G	14865386	2	3	207	1	0	0	0	0	0	0	0	1	11711	243	9	5		5	PDE3B	11	14865386	Silent	SNP	A	TCGA-A8-A094-01A-11W-A019-09		14865386	120141130	96	12653										
AKAP3	0	genome.wustl.edu	37	chr12	4737716	4737716	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aacttcatctactgaactccCgttgccaagttgggccctgg	9	13	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	4737716	4737716	C	G	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	missense	c.352	p.G118R	0.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	465	0	0	168	56	25	-	-	-	G	4737716	C	G	4737716	3	3	207	1	0	0	0	0	1	0	0	0	452	652	23	3	2217	3	AKAP3	12	4737716	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		4737716	129114179	97	12654										
KCNA1	0	genome.wustl.edu	37	chr12	5020629	5020629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcagctacccccggcaggccGaccacgacgaccacgagtgc	12	18	0	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	5020629	5020629	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.85	p.D29N	0.954	prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	38	0	0	19	17	45.95	-	-	-	A	5020629	G	A	5020629	3	1	207	1	0	0	0	0	1	0	0	0	8055	1058	37	1	87	1	KCNA1	12	5020629	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	282913	5020629	128831266	98	12655										
PLEKHG6	0	genome.wustl.edu	37	chr12	6436478	6436478	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgacagaagacacagatgaaGatgctccccttgtgccagat	10	10	0	7			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	6436478	6436478	G	A	SNP	PLEKHG6	ENST00000011684	human	ensembl	69_37n	1	known	missense	c.1729	p.D577N	0.283	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323	272	0	0	47	11	18.97	-	-	-	A	6436478	G	A	6436478	3	1	207	1	0	0	0	0	1	0	0	0	12148	942	33	2	1829	2	PLEKHG6	12	6436478	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	1415849	6436478	127415417	99	12656										
LAG3	0	genome.wustl.edu	37	chr12	6882449	6882449	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcagccccacaatccccctCcaggatctcagccttctgcg	7	19	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	6882449	6882449	C	T	SNP	LAG3	ENST00000203629	human	ensembl	69_37n	1	known	silent	c.150	p.L50	0.007	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LAG3	HGNC	ENSG00000089692	264	0	0	30	11	26.19	-	-	-	T	6882449	C	T	6882449	2	4	207	1	0	0	0	0	0	0	0	1	8654	842	30	2		2	LAG3	12	6882449	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	445971	6882449	126969446	100	12657										
CDCA3	0	genome.wustl.edu	37	chr12	6958758	6958758	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgggagtctcagggtcccttGagggcttgtcggagctctgg	17	9	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	6958758	6958758	G	A	SNP	CDCA3	ENST00000538862	human	ensembl	69_37n	-1	known	missense	c.515	p.S172L	0.146	NULL	NULL	-	no_errors	CDCA3	HGNC	ENSG00000111665	300	1	0.33	122	34	21.79	-	-	-	A	6958758	G	A	6958758	3	1	207	1	0	0	0	0	1	0	0	0	3116	1294	45	2	303	2	CDCA3	12	6958758	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	76309	6958758	126893137	101	12658										
USP5	0	genome.wustl.edu	37	chr12	6961446	6961446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	acgagtgcgccttctccttcGacacgccggtaagcccattc	9	16	1	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	6961446	6961446	G	A	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.103	p.D35N	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	12	0	0	10	5	33.33	-	-	-	A	6961446	G	A	6961446	3	1	207	1	0	0	0	0	1	0	0	0	17178	1058	37	1	105	1	USP5	12	6961446	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2688	6961446	126890449	102	12659										
USP5	0	genome.wustl.edu	37	chr12	6967614	6967614	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagacgatgactgagttggaGatagacatgaaccagcggat	13	6	0	6			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	6967614	6967614	G	C	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.891	p.E297D	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	120	0	0	49	17	25.76	-	-	-	C	6967614	G	C	6967614	3	2	207	1	0	0	0	0	1	0	0	0	17178	933	33	2	921	2	USP5	12	6967614	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	6168	6967614	126884281	103	12660										
TAS2R19	0	genome.wustl.edu	37	chr12	11175145	11175145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	caaacactaccagaattgatGaaatgatgagcagaaaacac	7	8	0	6			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	11175145	11175145	G	A	SNP	TAS2R19	ENST00000390673	human	ensembl	69_37n	-1	known	missense	c.26	p.S9L	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R19	HGNC	ENSG00000212124	322	0	0	104	43	29.05	-	-	-	A	11175145	G	A	11175145	3	1	207	1	0	0	0	0	1	0	0	0	15662	1294	45	2	876	2	TAS2R19	12	11175145	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	4207531	11175145	122676750	104	12661										
PPHLN1	0	genome.wustl.edu	37	chr12	42781327	42781327	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctcaagtggttcagcagtttCttcatcaaaggtttgttata	8	7	5	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	42781327	42781327	C	A	SNP	PPHLN1	ENST00000395568	human	ensembl	69_37n	1	known	missense	c.638	p.S213Y	0.931	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	347	0	0	113	65	36.52	-	-	-	A	42781327	C	A	42781327	3	1	207	1	0	0	0	0	1	0	0	0	12388	913	32	2	685	2	PPHLN1	12	42781327	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	31606182	42781327	91070568	105	12662										
FAM186B	0	genome.wustl.edu	37	chr12	49994808	49994808	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	acctccgaggccttcgtgttCatggtatgctggtcctggag	13	11	1	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	49994808	49994808	C	A	SNP	FAM186B	ENST00000257894	human	ensembl	69_37n	-1	known	missense	c.615	p.M205I	0.000	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436	237	0	0	80	25	23.81	-	-	-	A	49994808	C	A	49994808	3	1	207	1	0	0	0	0	1	0	0	0	5553	826	29	2	2082	2	FAM186B	12	49994808	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	7213481	49994808	83857087	106	12663										
NCKAP1L	0	genome.wustl.edu	37	chr12	54914999	54914999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcgtcctggagatctgtgctGagcagcgaaacctgagcgag	15	10	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	54914999	54914999	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.1855	p.E619K	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	348	0	0	162	74	31.36	-	-	-	A	54914999	G	A	54914999	3	1	207	1	0	0	0	0	1	0	0	0	10294	1291	45	2	1925	2	NCKAP1L	12	54914999	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	4920191	54914999	78936896	107	12664										
ITGA7	0	genome.wustl.edu	37	chr12	56082684	56082684	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atgcagcacagccgcgcggtCaaagctgtagagtgggcagc	15	11	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	56082684	56082684	C	G	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	missense	c.3034	p.D1012H	0.993	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	121	0	0	43	20	31.75	-	-	-	G	56082684	C	G	56082684	3	3	207	1	0	0	0	0	1	0	0	0	7935	826	29	2	527	2	ITGA7	12	56082684	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1167685	56082684	77769211	108	12665										
ITGA7	0	genome.wustl.edu	37	chr12	56096685	56096685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcccccaggcccctggctccGaacactgactcccaaccact	7	21	0	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	56096685	56096685	G	A	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	missense	c.385	p.R129W	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	233	0	0	78	36	31.58	-	-	-	A	56096685	G	A	56096685	3	1	207	1	0	0	0	0	1	0	0	0	7935	1057	37	1	3298	1	ITGA7	12	56096685	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	14001	56096685	77755210	109	12666										
BAZ2A	0	genome.wustl.edu	37	chr12	57006975	57006975	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcttgtcctctgcacccatcAgctccgtgtcatcaatacca	6	16	4	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	57006975	57006975	A	C	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.965	p.L322R	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	396	3	0.75	148	67	31.02	-	-	-	C	57006975	A	C	57006975	3	2	207	1	0	0	0	0	1	0	0	0	1335	188	7	5	4852	5	BAZ2A	12	57006975	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	910290	57006975	76844920	110	12667										
GLI1	0	genome.wustl.edu	37	chr12	57859009	57859009	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtgggatgatcccacatcctCagtcccggggacccttccca	10	16	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	57859009	57859009	C	G	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	missense	c.505	p.Q169E	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	141	0	0	60	25	29.41	-	-	-	G	57859009	C	G	57859009	3	3	207	1	0	0	0	0	1	0	0	0	6489	827	29	2	519	2	GLI1	12	57859009	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	852034	57859009	75992886	111	12668										
PIP4K2C	0	genome.wustl.edu	37	chr12	57994184	57994184	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tatattggtgaagaggagaaGaaaatatttctggagaagct	12	2	1	5			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	57994184	57994184	G	C	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	missense	c.777	p.K259N	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	268	0	0	59	16	20.78	-	-	-	C	57994184	G	C	57994184	3	2	207	1	0	0	0	0	1	0	0	0	12012	933	33	2	803	2	PIP4K2C	12	57994184	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	135175	57994184	75857711	112	12669										
LEMD3	0	genome.wustl.edu	37	chr12	65564185	65564185	+	Frame_Shift_Del	DEL	C	C	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agaggacgacgacgacgtggCctccagcagacaggtattaa							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	65564185	65564185	C	-	DEL	LEMD3	ENST00000308330	human	ensembl	69_37n	1	known	frame_shift_del	c.809	p.S271fs	0.961	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM	-	no_errors	LEMD3	HGNC	ENSG00000174106	63	0	0	14	2	12.5	-	-	-	-	65564185	C	-	65564185	7	5	207	1	0	1	0	1	0	0	0	0	8775	739	26	0	811	0	LEMD3	12	65564185	Frame_Shift_Del	DEL	C	TCGA-A8-A094-01A-11W-A019-09	7570001	65564185	68287710	113	12670										
UNC119B	0	genome.wustl.edu	37	chr12	121154503	121154503	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	acgttttgtccgctatcagtTcacaccggcatttctccgcc	7	15	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	12	121154503	121154503	T	A	SNP	UNC119B	ENST00000344651	human	ensembl	69_37n	1	known	missense	c.431	p.F144Y	1.000	pfam_GMP_PDE_delta,superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119B	HGNC	ENSG00000175970	215	0	0	45	14	22.95	-	-	-	A	121154503	T	A	121154503	3	1	207	1	0	0	0	0	1	0	0	0	17080	1783	62	5	441	5	UNC119B	12	121154503	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	55590318	121154503	12697392	114	12671										
UTP14C	0	genome.wustl.edu	37	chr13	52604942	52604942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agaatttgccaaatgtgattAtcagtgagaagcgcaacatc	9	7	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	13	52604942	52604942	A	C	SNP	UTP14C	ENST00000521776	human	ensembl	69_37n	1	known	missense	c.2002	p.I668L	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797	934	0	0	305	158	33.98	-	-	-	C	52604942	A	C	52604942	3	2	207	1	0	0	0	0	1	0	0	0	17193	449	16	5	2004	5	UTP14C	13	52604942	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09		52604942	62564936	115	12672										
OR4N2	0	genome.wustl.edu	37	chr14	20296308	20296308	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtcttcttctgaggcaaaaaAcaaggccatgtccacgtgca	9	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	20296308	20296308	A	G	SNP	OR4N2	ENST00000315947	human	ensembl	69_37n	1	known	missense	c.701	p.N234S	0.138	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	672	0	0	266	106	28.49	-	-	-	G	20296308	A	G	20296308	3	3	207	1	0	0	0	0	1	0	0	0	11150	43	2	5	703	5	OR4N2	14	20296308	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09		20296308	87053232	116	12673										
MDGA2	0	genome.wustl.edu	37	chr14	47342770	47342770	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cgccttccaatctgggtcgtGatgtctcaatgtacatataa	8	10	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	47342770	47342770	G	A	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.2618	p.S873L	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	361	0	0	107	41	27.33	-	-	-	A	47342770	G	A	47342770	3	1	207	1	0	0	0	0	1	0	0	0	9478	1294	45	2	475	2	MDGA2	14	47342770	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	27046462	47342770	60006770	117	12674										
SAMD4A	0	genome.wustl.edu	37	chr14	55168944	55168944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aacacaaccagcacattgagGagagcaggcagctgctgtcc	11	12	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	55168944	55168944	G	A	SNP	SAMD4A	ENST00000392067	human	ensembl	69_37n	1	known	missense	c.361	p.E121K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	209	0	0	80	25	23.81	-	-	-	A	55168944	G	A	55168944	3	1	207	1	0	0	0	0	1	0	0	0	13907	1175	41	2	364	2	SAMD4A	14	55168944	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	7826174	55168944	52180596	118	12675										
EXOC5	0	genome.wustl.edu	37	chr14	57714369	57714369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagcttcaggtccacctctaGagcctcctcctggggttctc	9	15	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	57714369	57714369	G	C	SNP	EXOC5	ENST00000413566	human	ensembl	69_37n	-1	known	missense	c.89	p.S30C	1.000	NULL	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367	27	0	0	10	5	33.33	-	-	-	C	57714369	G	C	57714369	3	2	207	1	0	0	0	0	1	0	0	0	5343	942	33	2	2105	2	EXOC5	14	57714369	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2545425	57714369	49635171	119	12676										
SYNE2	0	genome.wustl.edu	37	chr14	64488685	64488685	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaaaagcaatatgaaagtgtCagtgatttatttaataccaa	6	4	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	64488685	64488685	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.5463	p.V1821	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	248	0	0	110	29	20.86	-	-	-	T	64488685	C	T	64488685	2	4	207	1	0	0	0	0	0	0	0	1	15538	813	29	2		2	SYNE2	14	64488685	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	6774316	64488685	42860855	120	12677										
SYNE2	0	genome.wustl.edu	37	chr14	64494451	64494451	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcactaaaaatcccagcttCagtgaagagccttggctgga	10	10	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	64494451	64494451	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.6654	p.F2218	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	332	0	0	109	32	22.7	-	-	-	T	64494451	C	T	64494451	2	4	207	1	0	0	0	0	0	0	0	1	15538	825	29	2		2	SYNE2	14	64494451	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	5766	64494451	42855089	121	12678										
SYNE2	0	genome.wustl.edu	37	chr14	64497798	64497798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gattttagctttagcaaaatCcgtcaagcaaaatacatctt	5	8	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	64497798	64497798	C	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.6944	p.S2315Y	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	292	0	0	77	15	16.3	-	-	-	A	64497798	C	A	64497798	3	1	207	1	0	0	0	0	1	0	0	0	15538	855	30	2	7118	2	SYNE2	14	64497798	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	3347	64497798	42851742	122	12679										
SERPINA12	0	genome.wustl.edu	37	chr14	94962895	94962895	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tatatgccactacggaacatCatgggcaccttgactgaact	8	11	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	14	94962895	94962895	C	T	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	missense	c.720	p.M240I	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	572	0	0	172	201	53.89	-	-	-	T	94962895	C	T	94962895	3	4	207	1	0	0	0	0	1	0	0	0	14177	826	29	2	536	2	SERPINA12	14	94962895	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	30465097	94962895	12386645	123	12680										
CASC5	0	genome.wustl.edu	37	chr15	40943718	40943718	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agcagacccttgctcaaataGactttatgcaaaaacaaaga	6	9	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	40943718	40943718	G	C	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.6340	p.D2114H	0.989	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	178	0	0	67	24	26.37	-	-	-	C	40943718	G	C	40943718	3	2	207	1	0	0	0	0	1	0	0	0	2688	942	33	2	6418	2	CASC5	15	40943718	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09		40943718	61587674	124	12681										
CAPN3	0	genome.wustl.edu	37	chr15	42681294	42681294	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctcatgggctgctccattgaTgtaagtctggggtgtggggc	16	8	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	42681294	42681294	T	C	SNP	CAPN3	ENST00000397163	human	ensembl	69_37n	1	known	silent	c.801	p.D267	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN3	HGNC	ENSG00000092529	198	0	0	79	21	20.79	-	-	-	C	42681294	T	C	42681294	2	2	207	1	0	0	0	0	0	0	0	1	2653	1478	51	5		5	CAPN3	15	42681294	Silent	SNP	T	TCGA-A8-A094-01A-11W-A019-09	1737576	42681294	59850098	125	12682										
FBN1	0	genome.wustl.edu	37	chr15	48720661	48720661	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cctggcttcgtctgacattcAttctcatctgtttgatttta	6	10	4	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	48720661	48720661	A	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.6879	p.N2293K	0.590	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	193	0	0	72	23	24.21	-	-	-	T	48720661	A	T	48720661	3	4	207	1	0	0	0	0	1	0	0	0	5748	214	8	5	1776	5	FBN1	15	48720661	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	6039367	48720661	53810731	126	12683										
DMXL2	0	genome.wustl.edu	37	chr15	51778534	51778534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttccattttttcaagacataCctgcaaatttaaatattaat	2	7	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	51778534	51778534	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.5218	p.V1740L	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	254	1	0.39	77	38	32.76	-	-	-	A	51778534	C	A	51778534	3	1	207	1	0	0	0	0	1	0	0	0	4631	521	18	4	3979	4	DMXL2	15	51778534	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	3057873	51778534	50752858	127	12684										
SNX33	0	genome.wustl.edu	37	chr15	75949547	75949547	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagaccctgcgcatgtatgaCaacctctgaccgcgtgtgcc	10	14	1	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	75949547	75949547	C	T	SNP	SNX33	ENST00000569152	human	ensembl	69_37n	1	novel	nonsense	c.841	p.Q281*	0.709	pfam_Sorting_nexin_WASP-bd-dom	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNX33	HGNC	ENSG00000173548	140	0	0	58	19	24.68	-	-	-	T	75949547	C	T	75949547	4	4	207	1	0	0	0	0	0	1	0	0	14992	477	17	4	1722	4	SNX33	15	75949547	Nonsense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	24171013	75949547	26581845	128	12685										
FANCI	0	genome.wustl.edu	37	chr15	89843030	89843030	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	taccactttctcctgcttcaGagtcttgctatggagataca	7	11	3	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	15	89843030	89843030	G	C	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	splice_site	c.2637-1	e24-1	1.000	-	-	-	no_errors	FANCI	HGNC	ENSG00000140525	260	0	0	41	19	31.15	-	-	-	C	89843030	G	C	89843030	5	2	207	1	0	0	0	0	0	0	1	0	5715	956	33	2	2730	2	FANCI	15	89843030	Splice_Site	SNP	G	TCGA-A8-A094-01A-11W-A019-09	13893483	89843030	12688362	129	12686										
PPL	0	genome.wustl.edu	37	chr16	4934651	4934651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcctcctctttccgggcgatCtgctcttcctgggaagctct	9	15	4	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	4934651	4934651	C	T	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	silent	c.4005	p.Q1335	0.115	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	655	1	0.15	191	74	27.61	-	-	-	T	4934651	C	T	4934651	2	4	207	1	0	0	0	0	0	0	0	1	12411	912	32	2		2	PPL	16	4934651	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09		4934651	85420102	130	12687										
DNAH3	0	genome.wustl.edu	37	chr16	21042410	21042410	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgttcatattttcaatccaaAtagcatccactggcccatca	4	12	3	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	21042410	21042410	A	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.5396	p.I1799N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	285	0	0	146	25	14.53	-	-	-	T	21042410	A	T	21042410	3	4	207	1	0	0	0	0	1	0	0	0	4639	101	4	5	7057	5	DNAH3	16	21042410	Missense_Mutation	SNP	A	TCGA-A8-A094-01A-11W-A019-09	16107759	21042410	69312343	131	12688										
PLK1	0	genome.wustl.edu	37	chr16	23693394	23693394	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgtgcttacaggtataccttGttagtgggcaaaccaccttt	9	9	0	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	23693394	23693394	G	C	SNP	PLK1	ENST00000300093	human	ensembl	69_37n	1	known	missense	c.732	p.L244F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK1	HGNC	ENSG00000166851	213	0	0	114	52	31.33	-	-	-	C	23693394	G	C	23693394	3	2	207	1	0	0	0	0	1	0	0	0	12168	1368	48	4	746	4	PLK1	16	23693394	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2650984	23693394	66661359	132	12689										
SEZ6L2	0	genome.wustl.edu	37	chr16	29898983	29898983	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cccttaccggtcattgtcctCatccagcgagaccctttcaa	6	16	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	29898983	29898983	C	T	SNP	SEZ6L2	ENST00000308713	human	ensembl	69_37n	-1	known	missense	c.1195	p.E399K	1.000	superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938	154	0	0	59	11	15.71	-	-	-	T	29898983	C	T	29898983	3	4	207	1	0	0	0	0	1	0	0	0	14232	835	29	2	1624	2	SEZ6L2	16	29898983	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	6205589	29898983	60455770	133	12690										
CBFB	0	genome.wustl.edu	37	chr16	67100703	67100703	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgatgaggagcgagcccaggTagggtaacatcaggctttat	14	7	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	67100703	67100703	T	C	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	splice_site	c.399+2	e4+2	1.000	-	-	-	no_errors	CBFB	HGNC	ENSG00000067955	134	0	0	34	22	39.29	-	-	-	C	67100703	T	C	67100703	5	2	207	1	0	0	0	0	0	0	1	0	2724	1652	57	5	415	5	CBFB	16	67100703	Splice_Site	SNP	T	TCGA-A8-A094-01A-11W-A019-09	37201720	67100703	23254050	134	12691										
FTSJD1	0	genome.wustl.edu	37	chr16	71317656	71317656	+	Frame_Shift_Del	DEL	T	T	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gtacctccattggcacaaacTgtaaaacctgctggggtgag							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	71317656	71317656	T	-	DEL	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	frame_shift_del	c.2168	p.Q723fs	1.000	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	261	0	0	49	38	40.86	-	-	-	-	71317656	T	-	71317656	7	5	207	1	0	1	0	1	0	0	0	0	6139	1580	55	0	148	0	FTSJD1	16	71317656	Frame_Shift_Del	DEL	T	TCGA-A8-A094-01A-11W-A019-09	4216953	71317656	19037097	135	12692										
CDH13	0	genome.wustl.edu	37	chr16	83704566	83704566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaaccaacgaagggatgcttTctgttgtcaaagtaagggtg	12	6	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	16	83704566	83704566	T	C	SNP	CDH13	ENST00000566620	human	ensembl	69_37n	1	known	missense	c.1273	p.S425P	0.900	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945	544	1	0.18	268	42	13.55	-	-	-	C	83704566	T	C	83704566	3	2	207	1	0	0	0	0	1	0	0	0	3128	1783	62	5	1307	5	CDH13	16	83704566	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	12386910	83704566	6650187	136	12693										
TP53	0	genome.wustl.edu	37	chr17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	acactatgtcgaaaagtgttTctgtcatccaaatactccac							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	7578222	7578223	TC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	161	0	0	66	36	35.29	-	-	-	-	7578223	TC	-	7578222	7	5	207	1	0	1	0	1	0	0	0	0	16477	1780	62	0	667	0	TP53	17	7578222	Frame_Shift_Del	DEL	TC	TCGA-A8-A094-01A-11W-A019-09		7578222	73616988	137	12694										
DNAH2	0	genome.wustl.edu	37	chr17	7736526	7736526	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cggcctgcagagagccgcaaGaagagcgccaagggtgggac	17	11	0	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	7736526	7736526	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.13116	p.K4372N	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	59	0	0	10	5	33.33	-	-	-	C	7736526	G	C	7736526	3	2	207	1	0	0	0	0	1	0	0	0	4638	933	33	2	13450	2	DNAH2	17	7736526	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	158304	7736526	73458684	138	12695										
TRIM16	0	genome.wustl.edu	37	chr17	15535029	15535029	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agttctgatgtcatactcctCtagaaaatcaagagagttgt	8	7	4	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	15535029	15535029	C	G	SNP	TRIM16	ENST00000336708	human	ensembl	69_37n	-1	known	splice_site	c.1016-1	e5-1	1.000	-	-	-	no_errors	TRIM16	HGNC	ENSG00000221926	121	0	0	15	8	34.78	-	-	-	G	15535029	C	G	15535029	5	3	207	1	0	0	0	0	0	0	1	0	16587	927	32	2	687	2	TRIM16	17	15535029	Splice_Site	SNP	C	TCGA-A8-A094-01A-11W-A019-09	7798503	15535029	65660181	139	12696										
SMCR8	0	genome.wustl.edu	37	chr17	18219650	18219650	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tttccagagcttctgagtgcTtgaagactggcaacaggaag	12	8	1	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	18219650	18219650	T	C	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	silent	c.547	p.L183	1.000	pfam_Folliculin	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	120	0	0	53	12	18.46	-	-	-	C	18219650	T	C	18219650	2	2	207	1	0	0	0	0	0	0	0	1	14881	1606	56	5		5	SMCR8	17	18219650	Silent	SNP	T	TCGA-A8-A094-01A-11W-A019-09	2684621	18219650	62975560	140	12697										
WNK4	0	genome.wustl.edu	37	chr17	40948199	40948200	+	Frame_Shift_Del	DEL	TA	TA	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaaaagaaattgaagatttgTacagccggctggggaagcag							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	40948199	40948200	TA	-	DEL	WNK4	ENST00000246914	human	ensembl	69_37n	1	known	frame_shift_del	c.3490_3491	p.Y1164fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK4	HGNC	ENSG00000126562	77	0	0	26	4	12.12	-	-	-	-	40948200	TA	-	40948199	7	5	207	1	0	1	0	1	0	0	0	0	17477	1638	57	0	3556	0	WNK4	17	40948199	Frame_Shift_Del	DEL	TA	TCGA-A8-A094-01A-11W-A019-09	22728549	40948199	40247011	141	12698										
TTYH2	0	genome.wustl.edu	37	chr17	72245191	72245191	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gctcctgacaccttcatcctGaacgtcacggagggccagat	10	14	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	17	72245191	72245191	G	A	SNP	TTYH2	ENST00000528128	human	ensembl	69_37n	1	known	missense	c.211	p.E71K	1.000	pfam_Tweety	pfam_Tweety	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTYH2	HGNC	ENSG00000141540	140	0	0	43	23	34.85	-	-	-	A	72245191	G	A	72245191	3	1	207	1	0	0	0	0	1	0	0	0	16837	1277	45	2	872	2	TTYH2	17	72245191	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	31296992	72245191	8950019	142	12699										
ZFP161	0	genome.wustl.edu	37	chr18	5291339	5291339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctcatgcttcctcaatctgcCttcatcagaaaacgtcttcc	4	15	6	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	18	5291339	5291339	C	T	SNP	ZFP161	ENST00000357006	human	ensembl	69_37n	-1	known	missense	c.868	p.G290S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZFP161	HGNC	ENSG00000198081	194	0	0	24	6	20	-	-	-	T	5291339	C	T	5291339	3	4	207	1	0	0	0	0	1	0	0	0	17736	681	24	4	485	4	ZFP161	18	5291339	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		5291339	72785909	143	12700										
SMAD4	0	genome.wustl.edu	37	chr18	48586275	48586275	+	Frame_Shift_Del	DEL	C	C	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgcattccagcctcccatttCcaatcatcctggtaagtgta							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	18	48586275	48586275	C	-	DEL	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	frame_shift_del	c.944	p.N316fs	1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	324	0	0	88	44	32.35	-	-	-	-	48586275	C	-	48586275	7	5	207	1	0	1	0	1	0	0	0	0	14849	855	30	0	970	0	SMAD4	18	48586275	Frame_Shift_Del	DEL	C	TCGA-A8-A094-01A-11W-A019-09	43294936	48586275	29490973	144	12701										
OR7D2	0	genome.wustl.edu	37	chr19	9296715	9296715	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagatgctggtgaacatccaGaccgagaacaaagccatctc	9	11	1	4			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	9296715	9296715	G	A	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	silent	c.258	p.Q86	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	833	2	0.24	389	126	24.42	-	-	-	A	9296715	G	A	9296715	2	1	207	1	0	0	0	0	0	0	0	1	11292	933	33	2		2	OR7D2	19	9296715	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09		9296715	49832268	145	12702										
LDLR	0	genome.wustl.edu	37	chr19	11218157	11218157	+	Silent	SNP	C	C	A													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gcaacatggctagagactgcCgggactggtcagatgaaccc							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	11218157	11218157	C	A	SNP	LDLR	ENST00000558518	human	ensembl	69_37n	1	known	silent	c.907	p.R303	0.999	pfam_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164	59	0	0	22	23	51.11	-	-	-	A	11218157	C	A	11218157	2	1	207	1	0	0	0	0	0	0	0	1	8758	643	23	3		3	LDLR	19	11218157	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	1921442	11218157	47910826	146	12703	150	2								
LDLR	0	genome.wustl.edu	37	chr19	11218158	11218158	+	Missense_Mutation	SNP	G	G	A													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	caacatggctagagactgccGggactggtcagatgaaccca							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	11218158	11218158	G	A	SNP	LDLR	ENST00000558518	human	ensembl	69_37n	1	known	missense	c.908	p.R303Q	0.998	pfam_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164	57	0	0	22	22	50	-	-	-	A	11218158	G	A	11218158	3	1	207	1	0	0	0	0	1	0	0	0	8758	1116	39	1	930	1	LDLR	19	11218158	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	1	11218158	47910825	147	12704	150	2								
CACNA1A	0	genome.wustl.edu	37	chr19	13339552	13339552	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggacatttcttgcctaagccGagagggggagatattactcg	13	8	1	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	13339552	13339552	G	A	SNP	CACNA1A	ENST00000573710	human	ensembl	69_37n	-1	known	silent	c.5586	p.L1862	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	123	0	0	71	20	21.98	-	-	-	A	13339552	G	A	13339552	2	1	207	1	0	0	0	0	0	0	0	1	2563	1045	37	1		1	CACNA1A	19	13339552	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	2121394	13339552	45789431	148	12705										
IL27RA	0	genome.wustl.edu	37	chr19	14161686	14161686	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctggtcccatcctccggcttCatctaccaggtaggggggtt	12	13	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	14161686	14161686	C	T	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.1519	p.H507Y	0.010	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	80	0	0	22	12	35.29	-	-	-	T	14161686	C	T	14161686	3	4	207	1	0	0	0	0	1	0	0	0	7735	826	29	2	1561	2	IL27RA	19	14161686	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	822134	14161686	44967297	149	12706										
MYO9B	0	genome.wustl.edu	37	chr19	17212831	17212831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	cacaggacgagcaccctcagGaggatggctactacttcctg	11	13	1	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	17212831	17212831	G	A	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	0.259	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	57	0	0	25	8	23.53	-	-	-	A	17212831	G	A	17212831	3	1	207	1	0	0	0	0	1	0	0	0	10157	1175	41	2	306	2	MYO9B	19	17212831	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	3051145	17212831	41916152	150	12707										
ZNF737	0	genome.wustl.edu	37	chr19	20728199	20728199	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atcttatgtgtagtaaggttAgaggagcgcttaaaggcctt	12	5	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	20728199	20728199	A	C	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	silent	c.810	p.S270	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	345	0	0	148	66	30.7	-	-	-	C	20728199	A	C	20728199	2	2	207	1	0	0	0	0	0	0	0	1	18220	407	15	5		5	ZNF737	19	20728199	Silent	SNP	A	TCGA-A8-A094-01A-11W-A019-09	3515368	20728199	38400784	151	12708										
HAMP	0	genome.wustl.edu	37	chr19	35775852	35775852	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttcccacagcccatgttccaGaggcgaaggaggcgagacac	12	13	0	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	35775852	35775852	G	C	SNP	HAMP	ENST00000222304	human	ensembl	69_37n	1	known	missense	c.162	p.Q54H	0.030	pfam_Hepcidin	pfam_Hepcidin	-	no_errors	HAMP	HGNC	ENSG00000105697	219	1	0.45	30	13	30.23	-	-	-	C	35775852	G	C	35775852	3	2	207	1	0	0	0	0	1	0	0	0	6999	933	33	2	172	2	HAMP	19	35775852	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	15047653	35775852	23353131	152	12709										
ZNF45	0	genome.wustl.edu	37	chr19	44417544	44417544	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	atagtaaaacatattttatcGagttttcctgtgtgaatcct	6	6	0	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	44417544	44417544	G	A	SNP	ZNF45	ENST00000269973	human	ensembl	69_37n	-1	known	nonsense	c.2044	p.R682*	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC	ENSG00000124459	502	0	0	274	37	11.9	-	-	-	A	44417544	G	A	44417544	4	1	207	1	0	0	0	0	0	1	0	0	18017	1066	37	1	8	1	ZNF45	19	44417544	Nonsense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	8641692	44417544	14711439	153	12710										
ZNF350	0	genome.wustl.edu	37	chr19	52468721	52468721	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgctatgagacacgtcttctGaatgaagccttttccacatt	7	10	2	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	52468721	52468721	G	A	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	nonsense	c.985	p.Q329*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	468	0	0	144	52	26.53	-	-	-	A	52468721	G	A	52468721	4	1	207	1	0	0	0	0	0	1	0	0	17959	1299	45	2	617	2	ZNF350	19	52468721	Nonsense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	8051177	52468721	6660262	154	12711										
ZIM3	0	genome.wustl.edu	37	chr19	57647337	57647337	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ccagtggaagtattttcttaGatccgtcacattctacacct	6	11	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	57647337	57647337	G	C	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.368	p.S123C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	725	0	0	375	109	22.38	-	-	-	C	57647337	G	C	57647337	3	2	207	1	0	0	0	0	1	0	0	0	17781	942	33	2	1054	2	ZIM3	19	57647337	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	5178616	57647337	1481646	155	12712										
ZNF772	0	genome.wustl.edu	37	chr19	57985633	57985633	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggtgtgtttcctggtgctcaGccaagtgcaaaatgtctttt	11	8	2	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	19	57985633	57985633	G	T	SNP	ZNF772	ENST00000343280	human	ensembl	69_37n	-1	known	missense	c.479	p.A160D	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128	279	0	0	72	33	31.43	-	-	-	T	57985633	G	T	57985633	3	4	207	1	0	0	0	0	1	0	0	0	18238	971	34	4	994	4	ZNF772	19	57985633	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	338296	57985633	1143350	156	12713										
CHGB	0	genome.wustl.edu	37	chr20	5903764	5903764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ggccagtttaggggaaaagaGggaccaccattcaacccact	11	11	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	20	5903764	5903764	G	A	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.974	p.R325K	0.042	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	267	0	0	95	44	31.65	-	-	-	A	5903764	G	A	5903764	3	1	207	1	0	0	0	0	1	0	0	0	3368	1000	35	4	988	4	CHGB	20	5903764	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09		5903764	57121756	157	12714										
NCOA6	0	genome.wustl.edu	37	chr20	33345176	33345176	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctggggaagtgggttattttGaggtggccttggtcccatct	15	7	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	20	33345176	33345176	G	C	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.1375	p.Q459E	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	312	0	0	103	39	27.46	-	-	-	C	33345176	G	C	33345176	3	2	207	1	0	0	0	0	1	0	0	0	10305	1299	45	2	4852	2	NCOA6	20	33345176	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	27441412	33345176	29680344	158	12715										
SAMHD1	0	genome.wustl.edu	37	chr20	35555629	35555629	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aagtggaataaatcgtccatCaaacatgtgagaaaatggcc	9	7	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	20	35555629	35555629	C	G	SNP	SAMHD1	ENST00000262878	human	ensembl	69_37n	-1	known	missense	c.652	p.D218H	1.000	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347	535	2	0.37	242	102	29.39	-	-	-	G	35555629	C	G	35555629	3	3	207	1	0	0	0	0	1	0	0	0	13914	826	29	2	1272	2	SAMHD1	20	35555629	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09	2210453	35555629	27469891	159	12716										
STK4	0	genome.wustl.edu	37	chr20	43703693	43703693	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agtggaggaccttcagaagaGgctcttggccctggacccca	13	12	2	2			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	20	43703693	43703693	G	C	SNP	STK4	ENST00000372806	human	ensembl	69_37n	1	known	missense	c.1340	p.R447T	1.000	pfam_SARAH_domain,pfscan_SARAH	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK4	HGNC	ENSG00000101109	153	0	0	103	17	14.05	-	-	-	C	43703693	G	C	43703693	3	2	207	1	0	0	0	0	1	0	0	0	15397	1000	35	4	1382	4	STK4	20	43703693	Missense_Mutation	SNP	G	TCGA-A8-A094-01A-11W-A019-09	8148064	43703693	19321827	160	12717										
PIGT	0	genome.wustl.edu	37	chr20	44045206	44045206	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ctggggcagctgatctccaaGtattctctacgggagctgca	12	11	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	20	44045206	44045206	G	A	SNP	PIGT	ENST00000279036	human	ensembl	69_37n	1	known	silent	c.237	p.K79	1.000	pfam_Gpi16	pfam_Gpi16	-	no_errors	PIGT	HGNC	ENSG00000124155	81	0	0	43	8	15.69	-	-	-	A	44045206	G	A	44045206	2	1	207	1	0	0	0	0	0	0	0	1	11973	1020	36	4		4	PIGT	20	44045206	Silent	SNP	G	TCGA-A8-A094-01A-11W-A019-09	341513	44045206	18980314	161	12718										
DYRK1A	0	genome.wustl.edu	37	chr21	38884518	38884518	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ccactccatgacatccctgtCttcctcaacgacttcttcct	3	18	3	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	21	38884518	38884518	C	T	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.1976	p.S659F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	304	0	0	120	57	32.2	-	-	-	T	38884518	C	T	38884518	3	4	207	1	0	0	0	0	1	0	0	0	4889	913	32	2	2102	2	DYRK1A	21	38884518	Missense_Mutation	SNP	C	TCGA-A8-A094-01A-11W-A019-09		38884518	9245377	162	12719										
OSM	0	genome.wustl.edu	37	chr22	30662766	30662767	+	Frame_Shift_Del	DEL	CT	CT	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	agtacttactgagcagcgtcCtctgtgtgagcagtaccccc							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	22	30662766	30662767	CT	-	DEL	OSM	ENST00000215781	human	ensembl	69_37n	-1	known	frame_shift_del	c.23_22	p.R8fs	0.104:0.160	pfam_Leukemia_IF/oncostatin	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	-	no_errors	OSM	HGNC	ENSG00000099985	12	0	0	9	4	30.77	-	-	-	-	30662767	CT	-	30662766	7	5	207	1	0	1	0	1	0	0	0	0	11364	681	24	0	747	0	OSM	22	30662766	Frame_Shift_Del	DEL	CT	TCGA-A8-A094-01A-11W-A019-09		30662766	20641800	163	12720										
PARVB	0	genome.wustl.edu	37	chr22	44514987	44514987	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tgaagcagctggaggaagacCtgtatgacggccaggtgctg	16	8	0	3			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	22	44514987	44514987	C	T	SNP	PARVB	ENST00000406477	human	ensembl	69_37n	1	known	silent	c.442	p.L148	0.993	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677	117	0	0	75	9	10.71	-	-	-	T	44514987	C	T	44514987	2	4	207	1	0	0	0	0	0	0	0	1	11542	680	24	4		4	PARVB	22	44514987	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	13852221	44514987	6789579	164	12721										
MBTPS2	0	genome.wustl.edu	37	chrX	21871596	21871596	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	ttgcaacttatatcgccagtCcagcagctaaggatattttg	8	9	0	0			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	X	21871596	21871596	C	G	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	silent	c.645	p.V215	0.985	pfam_Peptidase_M50,superfamily_PDZ	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	527	0	0	530	69	11.5	-	-	-	G	21871596	C	G	21871596	2	3	207	1	0	0	0	0	0	0	0	1	9433	842	30	2		2	MBTPS2	23	21871596	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09		21871596	133398964	165	12722										
PIM2	0	genome.wustl.edu	37	chrX	48775085	48775085	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	gaccagcccagcacacgattCcggggaatcactttgatggc	11	13	1	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	X	48775085	48775085	C	G	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	silent	c.195	p.R65	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	38	0	0	12	9	42.86	-	-	-	G	48775085	C	G	48775085	2	3	207	1	0	0	0	0	0	0	0	1	12002	842	30	2		2	PIM2	23	48775085	Silent	SNP	C	TCGA-A8-A094-01A-11W-A019-09	26903489	48775085	106495475	166	12723										
KDM5C	0	genome.wustl.edu	37	chrX	53240703	53240703	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	tcttcgggggttaggtgccgTttactgtcactgacagggaa	14	8	2	1			TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	X	53240703	53240703	T	G	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.1377	p.K459N	0.999	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	135	0	0	104	17	14.05	-	-	-	G	53240703	T	G	53240703	3	3	207	1	0	0	0	0	1	0	0	0	8188	1722	60	5	3471	5	KDM5C	23	53240703	Missense_Mutation	SNP	T	TCGA-A8-A094-01A-11W-A019-09	4465618	53240703	102029857	167	12724										
ATRX	0	genome.wustl.edu	37	chrX	76938228	76938229	+	Frame_Shift_Del	DEL	TC	TC	-													0.479041916167665	80	1.27355219110325e-31	3.99902112733502	4.71384615384615	3.44915572232645	0.87729458149696	1	60	aaatcttttgtatttggaatTctttttttggtggttctggc							TCGA-A8-A094-01A-11W-A019-09	TCGA-A8-A094-10A-01W-A021-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ab9bf7a6-688e-4388-9682-6b1616723fde	81550760-c58d-4ae7-90eb-9a436d664442	X	76938228	76938229	TC	-	DEL	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	frame_shift_del	c.2520_2519	p.R840fs	0.854:0.868	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	1299	0	0	385	138	26.09	-	-	-	-	76938229	TC	-	76938228	7	5	207	1	0	1	0	1	0	0	0	0	1212	1780	62	0	5066	0	ATRX	23	76938228	Frame_Shift_Del	DEL	TC	TCGA-A8-A094-01A-11W-A019-09	23697525	76938228	78332332	168	12725										
TP73	0	genome.wustl.edu	37	chr1	3624237	3624237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gccctacgcacaacccagctCcaccttcgacaccatgtcgc	6	20	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	3624237	3624237	C	T	SNP	TP73	ENST00000378295	human	ensembl	69_37n	1	known	missense	c.311	p.S104F	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900	13	0	0	14	11	44	-	-	-	T	3624237	C	T	3624237	3	4	208	1	0	0	0	0	1	0	0	0	16489	855	30	2	364	2	TP73	1	3624237	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		3624237	245626384	1	12726										
DNAJC11	0	genome.wustl.edu	37	chr1	6727814	6727814	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctcctctcttctctctctctCtgcagccgctcaaactcctc	3	20	5	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	6727814	6727814	C	G	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	missense	c.333	p.Q111H	1.000	NULL	pfam_DnaJ-like_C11_C,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC11	HGNC	ENSG00000007923	21	0	0	70	30	30	-	-	-	G	6727814	C	G	6727814	3	3	208	1	0	0	0	0	1	0	0	0	4665	912	32	2	1398	2	DNAJC11	1	6727814	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	3103577	6727814	242522807	2	12727										
UBR4	0	genome.wustl.edu	37	chr1	19430614	19430614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cagcatctccagcagcatgtCctgcgtctcatcgatcagct	8	15	3	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	19430614	19430614	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.12865	p.D4289N	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	189	0	0	315	58	15.55	-	-	-	T	19430614	C	T	19430614	3	4	208	1	0	0	0	0	1	0	0	0	17001	855	30	2	2766	2	UBR4	1	19430614	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	12702800	19430614	229820007	3	12728										
TRNAU1AP	0	genome.wustl.edu	37	chr1	28880170	28880170	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agctggaaccctacatggatGagaacttcatctccagagcc	9	12	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	28880170	28880170	G	T	SNP	TRNAU1AP	ENST00000373830	human	ensembl	69_37n	1	known	nonsense	c.46	p.E16*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	48	0	0	101	47	31.76	-	-	-	T	28880170	G	T	28880170	4	4	208	1	0	0	0	0	0	1	0	0	16668	1291	45	2	52	2	TRNAU1AP	1	28880170	Nonsense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	9449556	28880170	220370451	4	12729										
GPBP1L1	0	genome.wustl.edu	37	chr1	46108107	46108107	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aaatctacctaccccatactCcagaaggtgtcccaataggt	6	13	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	46108107	46108107	C	G	SNP	GPBP1L1	ENST00000290795	human	ensembl	69_37n	-1	known	missense	c.542	p.G181A	1.000	NULL	NULL	-	no_errors	GPBP1L1	HGNC	ENSG00000159592	299	0	0	591	192	24.52	-	-	-	G	46108107	C	G	46108107	3	3	208	1	0	0	0	0	1	0	0	0	6646	855	30	2	910	2	GPBP1L1	1	46108107	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	17227937	46108107	203142514	5	12730										
JAK1	0	genome.wustl.edu	37	chr1	65313316	65313316	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cttgtaatccatcagggtccCagaatagatgtgtgttctcg	10	9	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	65313316	65313316	C	A	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.1798	p.G600W	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	71	0	0	99	33	25	-	-	-	A	65313316	C	A	65313316	3	1	208	1	0	0	0	0	1	0	0	0	7991	594	21	4	1718	4	JAK1	1	65313316	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	19205209	65313316	183937305	6	12731										
CTH	0	genome.wustl.edu	37	chr1	70890019	70890019	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cccagaaggtgattgacattGaaggctgtgcacatattgtc	11	8	0	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	70890019	70890019	G	T	SNP	CTH	ENST00000370938	human	ensembl	69_37n	1	known	nonsense	c.508	p.E170*	0.795	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	-	no_errors	CTH	HGNC	ENSG00000116761	295	0	0	458	177	27.83	-	-	-	T	70890019	G	T	70890019	4	4	208	1	0	0	0	0	0	1	0	0	4041	1291	45	2	526	2	CTH	1	70890019	Nonsense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5576703	70890019	178360602	7	12732										
ZNHIT6	0	genome.wustl.edu	37	chr1	86123612	86123612	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcaatgatcactttgttcctCaaattgtctaggagactttt	6	8	4	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	86123612	86123612	C	T	SNP	ZNHIT6	ENST00000370574	human	ensembl	69_37n	-1	known	silent	c.1290	p.L430	1.000	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT6	HGNC	ENSG00000117174	135	0	0	144	18	11.11	-	-	-	T	86123612	C	T	86123612	2	4	208	1	0	0	0	0	0	0	0	1	18302	825	29	2		2	ZNHIT6	1	86123612	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	15233593	86123612	163127009	8	12733										
AMY2B	0	genome.wustl.edu	37	chr1	104112739	104112739	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	caggacctgaccaactacctCatgaagatccttaccaaggt	7	13	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	104112739	104112739	C	T	SNP	AMY2B	ENST00000491397	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038	53	0	0	54	7	11.29	-	-	-	T	104112739	C	T	104112739	1	4	208	0	1	0	0	0	0	0	0	0	595	841	29	2		2	AMY2B	1	104112739	RNA	SNP	C	TCGA-A8-A095-01A-11W-A019-09	17989127	104112739	145137882	9	12734										
PRMT6	0	genome.wustl.edu	37	chr1	107599767	107599767	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cgggaccagtggagactgtaGagttgccggaacaggtggat	17	7	0	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	107599767	107599767	G	C	SNP	PRMT6	ENST00000370078	human	ensembl	69_37n	1	known	missense	c.430	p.E144Q	1.000	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_mo5U34_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_mo5U34_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT6	HGNC	ENSG00000198890	65	0	0	37	17	30.91	-	-	-	C	107599767	G	C	107599767	3	2	208	1	0	0	0	0	1	0	0	0	12621	943	33	2	432	2	PRMT6	1	107599767	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	3487028	107599767	141650854	10	12735										
WDR3	0	genome.wustl.edu	37	chr1	118495209	118495209	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cagtggagactatgttgtatCatcgtcccatgacaaatctc	8	10	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	118495209	118495209	C	T	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	1	known	missense	c.2075	p.S692L	1.000	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	197	0	0	209	116	35.58	-	-	-	T	118495209	C	T	118495209	3	4	208	1	0	0	0	0	1	0	0	0	17382	838	29	2	2145	2	WDR3	1	118495209	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	10895442	118495209	130755412	11	12736										
S100A1	0	genome.wustl.edu	37	chr1	153603056	153603056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	caacgtgttccacgcccactCgggcaaagagggggacaagt	13	12	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	153603056	153603056	C	T	SNP	S100A1	ENST00000368698	human	ensembl	69_37n	1	known	missense	c.218	p.S73L	1.000	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100A1	HGNC	ENSG00000160678	17	0	0	58	14	19.44	-	-	-	T	153603056	C	T	153603056	3	4	208	1	0	0	0	0	1	0	0	0	13857	893	31	1	61	1	S100A1	1	153603056	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	35107847	153603056	95647565	12	12737										
FCRL4	0	genome.wustl.edu	37	chr1	157557674	157557674	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccttgaattttaattattttGaaatttgatctaaatacatc	3	5	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	157557674	157557674	G	A	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	silent	c.543	p.F181	0.000	smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	70	0	0	195	46	19.09	-	-	-	A	157557674	G	A	157557674	2	1	208	1	0	0	0	0	0	0	0	1	5843	1281	45	2		2	FCRL4	1	157557674	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	3954618	157557674	91692947	13	12738										
MR1	0	genome.wustl.edu	37	chr1	181024397	181024397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctaccttccaacaccagatcGatgattgcagatccctcttt	5	14	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	181024397	181024397	G	A	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	missense	c.1022	p.R341Q	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	155	0	0	380	108	22.13	-	-	-	A	181024397	G	A	181024397	3	1	208	1	0	0	0	0	1	0	0	0	9824	1058	37	1	1044	1	MR1	1	181024397	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	23466723	181024397	68226224	14	12739										
ARID4B	0	genome.wustl.edu	37	chr1	235357486	235357486	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gaagtttacagttttttggaGagtatttttcatctttgtct	8	4	3	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	235357486	235357486	G	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.1967	p.S656C	1.000	superfamily_Chromodomain-like	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	99	0	0	274	41	13.02	-	-	-	C	235357486	G	C	235357486	3	2	208	1	0	0	0	0	1	0	0	0	922	942	33	2	1995	2	ARID4B	1	235357486	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	54333089	235357486	13893135	15	12740										
OR2T27	0	genome.wustl.edu	37	chr1	248813660	248813660	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aggcacctcgcagaagaagtGgttgatctcccgagaggcac	13	11	1	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	1	248813660	248813660	G	C	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.526	p.H176D	0.834	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	54	0	0	96	17	15.04	-	-	-	C	248813660	G	C	248813660	3	2	208	1	0	0	0	0	1	0	0	0	11094	1348	47	4	430	4	OR2T27	1	248813660	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	13456174	248813660	436961	16	12741										
LTBP1	0	genome.wustl.edu	37	chr2	33590449	33590449	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gatttgtgctgggaacatctGagtgatgaatacgtgtgtag	14	4	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	33590449	33590449	G	C	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	silent	c.4593	p.L1531	1.000	superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	76	0	0	133	54	28.88	-	-	-	C	33590449	G	C	33590449	2	2	208	1	0	0	0	0	0	0	0	1	9139	1277	45	2		2	LTBP1	2	33590449	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09		33590449	209608924	17	12742										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71170756	71170756	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtgagcagggtgtttggggtGagacccctactcacccccgc	14	13	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	71170756	71170756	G	A	SNP	ATP6V1B1	ENST00000454446	human	ensembl	69_37n	1	novel	silent	c.138	p.V46	0.945	NULL	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_ATPase_F1/A1-cplx_a/bsu_N	-	no_stop_codon:bad_bp_length_for_coding_region	ATP6V1B1	HGNC	ENSG00000116039	24	0	0	27	7	20.59	-	-	-	A	71170756	G	A	71170756	2	1	208	1	0	0	0	0	0	0	0	1	1182	1305	45	2		2	ATP6V1B1	2	71170756	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	37580307	71170756	172028617	18	12743										
SCN9A	0	genome.wustl.edu	37	chr2	167138306	167138306	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	acgccttttcttgtgtatttGattggtcgtgccctaaaaaa	8	8	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	167138306	167138306	G	C	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.1990	p.Q664E	0.994	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	172	0	0	175	63	26.47	-	-	-	C	167138306	G	C	167138306	3	2	208	1	0	0	0	0	1	0	0	0	14013	1299	45	2	4039	2	SCN9A	2	167138306	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	95967550	167138306	76061067	19	12744										
TTN	0	genome.wustl.edu	37	chr2	179467114	179467114	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtacttcctgagctctttcaGattaggcaccacacattcac	6	13	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	179467114	179467114	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47311	p.L15771V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	117	0	0	185	60	24.49	-	-	-	C	179467114	G	C	179467114	3	2	208	1	0	0	0	0	1	0	0	0	16832	933	33	2	52998	2	TTN	2	179467114	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	12328808	179467114	63732259	20	12745										
GPR1	0	genome.wustl.edu	37	chr2	207041528	207041528	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agagagttcttgagggttcgAtgccgatgagataagacagg	15	5	1	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	207041528	207041528	A	T	SNP	GPR1	ENST00000407325	human	ensembl	69_37n	-1	known	missense	c.444	p.H148Q	0.931	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR1_rcpt,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_ATII_rcpt	-	no_errors	GPR1	HGNC	ENSG00000183671	304	0	0	265	115	30.18	-	-	-	T	207041528	A	T	207041528	3	4	208	1	0	0	0	0	1	0	0	0	6671	330	12	5	627	5	GPR1	2	207041528	Missense_Mutation	SNP	A	TCGA-A8-A095-01A-11W-A019-09	27574414	207041528	36157845	21	12746										
NCL	0	genome.wustl.edu	37	chr2	232326353	232326353	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgctttcatcgctgctggttCaatttcatcttcatcctcat	5	12	6	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	232326353	232326353	C	T	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.511	p.E171K	0.472	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	90	0	0	192	85	30.69	-	-	-	T	232326353	C	T	232326353	3	4	208	1	0	0	0	0	1	0	0	0	10298	835	29	2	1669	2	NCL	2	232326353	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	25284825	232326353	10873020	22	12747										
PER2	0	genome.wustl.edu	37	chr2	239164479	239164479	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aagggctccttctcttggctGagaccacaggccagggcagg	14	12	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	2	239164479	239164479	G	A	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	silent	c.2139	p.L713	0.002	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	82	0	0	72	36	33.33	-	-	-	A	239164479	G	A	239164479	2	1	208	1	0	0	0	0	0	0	0	1	11803	1277	45	2		2	PER2	2	239164479	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	6838126	239164479	4034894	23	12748										
SFMBT1	0	genome.wustl.edu	37	chr3	52947576	52947576	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctttgttaagatatggccctGagaagcaacggtggttgaag	13	6	0	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	3	52947576	52947576	G	T	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	nonsense	c.1538	p.S513*	1.000	pfam_DUF3588	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	75	0	0	85	41	32.54	-	-	-	T	52947576	G	T	52947576	4	4	208	1	0	0	0	0	0	1	0	0	14245	1294	45	2	1090	2	SFMBT1	3	52947576	Nonsense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		52947576	145074854	24	12749										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	57	0	0	108	13	10.74	-	-	-	A	178938934	G	A	178938934	3	1	208	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	125991358	178938934	19083496	25	12750										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	134	0	0	246	92	27.22	-	-	-	T	178952085	A	T	178952085	3	4	208	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A095-01A-11W-A019-09	13151	178952085	19070345	26	12751										
KIT	0	genome.wustl.edu	37	chr4	55561727	55561727	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gaaccgtctccaccatccatCcatccaggaaaatcagactt	5	15	2	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	4	55561727	55561727	C	G	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.117	p.I39M	0.988	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	49	0	0	71	26	26.8	-	-	-	G	55561727	C	G	55561727	3	3	208	1	0	0	0	0	1	0	0	0	8382	845	30	2	123	2	KIT	4	55561727	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		55561727	135592549	27	12752										
KDR	0	genome.wustl.edu	37	chr4	55953837	55953837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cttcctcctcctccatacagGaaacaggtgaggtaggcaga	10	12	0	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	4	55953837	55953837	G	T	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.3599	p.S1200Y	1.000	prints_Tyr_kinase_VEGFR2_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	158	0	0	197	26	11.66	-	-	-	T	55953837	G	T	55953837	3	4	208	1	0	0	0	0	1	0	0	0	8192	1174	41	2	487	2	KDR	4	55953837	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	392110	55953837	135200439	28	12753										
LIN54	0	genome.wustl.edu	37	chr4	83905831	83905831	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tggaaatgggcgtggctgtaGagtcaccagtagaatttatg	14	5	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	4	83905831	83905831	G	C	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.167	p.S56C	0.994	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	151	0	0	262	106	28.73	-	-	-	C	83905831	G	C	83905831	3	2	208	1	0	0	0	0	1	0	0	0	8865	942	33	2	2130	2	LIN54	4	83905831	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	27951994	83905831	107248445	29	12754										
SEC24B	0	genome.wustl.edu	37	chr4	110460811	110460811	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	atgaatttttgcttcatgttCagcagcagatttgtaagtga	9	5	2	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	4	110460811	110460811	C	T	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	nonsense	c.3787	p.Q1263*	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	54	0	0	128	17	11.72	-	-	-	T	110460811	C	T	110460811	4	4	208	1	0	0	0	0	0	1	0	0	14083	827	29	2	3881	2	SEC24B	4	110460811	Nonsense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	26554980	110460811	80693465	30	12755										
TIFA	0	genome.wustl.edu	37	chr4	113199522	113199522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccaggatggtaaaccgtcatCtggagacaagttactgtctc	10	10	3	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	4	113199522	113199522	C	G	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	missense	c.51	p.Q17H	0.849	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	280	0	0	236	77	24.6	-	-	-	G	113199522	C	G	113199522	3	3	208	1	0	0	0	0	1	0	0	0	15989	912	32	2	507	2	TIFA	4	113199522	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	2738711	113199522	77954754	31	12756										
TIGD6	0	genome.wustl.edu	37	chr5	149375540	149375540	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tggcgatctctaaatctgttCagccagcccacacttgcttg	8	13	3	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	5	149375540	149375540	C	T	SNP	TIGD6	ENST00000296736	human	ensembl	69_37n	-1	known	silent	c.372	p.L124	0.984	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD6	HGNC	ENSG00000164296	145	0	0	260	118	31.22	-	-	-	T	149375540	C	T	149375540	2	4	208	1	0	0	0	0	0	0	0	1	15995	813	29	2		2	TIGD6	5	149375540	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09		149375540	31539720	32	12757										
KIF4B	0	genome.wustl.edu	37	chr5	154395982	154395982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ataggccaaaacaatgctggGagaatattgccaccattctg	9	9	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	5	154395982	154395982	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.2563	p.E855K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	142	0	0	164	64	28.07	-	-	-	A	154395982	G	A	154395982	3	1	208	1	0	0	0	0	1	0	0	0	8356	1175	41	2	2565	2	KIF4B	5	154395982	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5020442	154395982	26519278	33	12758										
SLC34A1	0	genome.wustl.edu	37	chr5	176821143	176821143	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cctcctagtcaagatgctcaActccctgctcaagggccaag	8	15	3	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	5	176821143	176821143	A	C	SNP	SLC34A1	ENST00000324417	human	ensembl	69_37n	1	known	missense	c.1121	p.N374T	1.000	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	40	0	0	31	10	24.39	-	-	-	C	176821143	A	C	176821143	3	2	208	1	0	0	0	0	1	0	0	0	14656	43	2	5	1246	5	SLC34A1	5	176821143	Missense_Mutation	SNP	A	TCGA-A8-A095-01A-11W-A019-09	22425161	176821143	4094117	34	12759										
DST	0	genome.wustl.edu	37	chr6	56485062	56485062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgagacttaaatcttttcttTtaagatgatcttccagtgtt	6	6	3	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	56485062	56485062	T	C	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.3770	p.K1257R	0.639	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	165	0	0	263	113	30.05	-	-	-	C	56485062	T	C	56485062	3	2	208	1	0	0	0	0	1	0	0	0	4818	1841	64	5	16633	5	DST	6	56485062	Missense_Mutation	SNP	T	TCGA-A8-A095-01A-11W-A019-09		56485062	114630005	35	12760										
PHF3	0	genome.wustl.edu	37	chr6	64423044	64423044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ttgctcaaaatcccatggttCcctggccacctgttgttcat	7	13	2	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	64423044	64423044	C	T	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.5560	p.P1854S	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	323	0	0	350	131	27.18	-	-	-	T	64423044	C	T	64423044	3	4	208	1	0	0	0	0	1	0	0	0	11910	855	30	2	5618	2	PHF3	6	64423044	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	7937982	64423044	106692023	36	12761										
COL12A1	0	genome.wustl.edu	37	chr6	75875459	75875459	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccccaattgatgtgtcagtgAtgtctttagtaactaaatct	7	8	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	75875459	75875459	A	T	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2747	p.I916N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	258	0	0	336	142	29.65	-	-	-	T	75875459	A	T	75875459	3	4	208	1	0	0	0	0	1	0	0	0	3699	333	12	5	6656	5	COL12A1	6	75875459	Missense_Mutation	SNP	A	TCGA-A8-A095-01A-11W-A019-09	11452415	75875459	95239608	37	12762										
MDN1	0	genome.wustl.edu	37	chr6	90385248	90385248	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgtcggacgagcatcttcatCaaatgtgctgagaaccctct	9	11	4	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	90385248	90385248	C	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.12696	p.L4232F	0.995	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	45	0	0	69	31	31	-	-	-	A	90385248	C	A	90385248	3	1	208	1	0	0	0	0	1	0	0	0	9486	825	29	2	4194	2	MDN1	6	90385248	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	14509789	90385248	80729819	38	12763										
MDN1	0	genome.wustl.edu	37	chr6	90400449	90400449	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcttcctcctcctcttcactCagggctgtcctagagttcct	6	16	4	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	90400449	90400449	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.10692	p.L3564	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	48	0	0	95	32	25.2	-	-	-	T	90400449	C	T	90400449	2	4	208	1	0	0	0	0	0	0	0	1	9486	813	29	2		2	MDN1	6	90400449	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	15201	90400449	80714618	39	12764										
ROS1	0	genome.wustl.edu	37	chr6	117709171	117709171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agggcctaattcaaagagttCaataatatcactgatcagga	8	7	4	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	117709171	117709171	C	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.1786	p.E596K	0.608	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	207	0	0	187	82	30.37	-	-	-	T	117709171	C	T	117709171	3	4	208	1	0	0	0	0	1	0	0	0	13617	835	29	2	5381	2	ROS1	6	117709171	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	27308722	117709171	53405896	40	12765										
MYB	0	genome.wustl.edu	37	chr6	135515566	135515566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aattgctcctaatgtcaaccGagaatgagctaaaaggacag	9	8	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	135515566	135515566	G	A	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	missense	c.916	p.E306K	1.000	pfam_Tscrpt_reg_Wos2-domain	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	105	0	0	170	67	28.27	-	-	-	A	135515566	G	A	135515566	3	1	208	1	0	0	0	0	1	0	0	0	10079	1059	37	1	946	1	MYB	6	135515566	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	17806395	135515566	35599501	41	12766										
SYNE1	0	genome.wustl.edu	37	chr6	152453309	152453309	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	atgtgggactcacagaccctGaggtgtccagttcatcagca	11	11	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	152453309	152453309	G	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.26042	p.S8681*	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	176	0	0	199	74	27.11	-	-	-	C	152453309	G	C	152453309	4	2	208	1	0	0	0	0	0	1	0	0	15537	1294	45	2	363	2	SYNE1	6	152453309	Nonsense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	16937743	152453309	18661758	42	12767										
SYNE1	0	genome.wustl.edu	37	chr6	152454417	152454417	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgtttattgcttacctgctgActacttgacacgtctaataa	6	9	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	6	152454417	152454417	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.25995	p.S8665	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	272	0	0	317	112	26.11	-	-	-	G	152454417	A	G	152454417	2	3	208	1	0	0	0	0	0	0	0	1	15537	272	10	5		5	SYNE1	6	152454417	Silent	SNP	A	TCGA-A8-A095-01A-11W-A019-09	1108	152454417	18660650	43	12768										
PCLO	0	genome.wustl.edu	37	chr7	82390016	82390016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tttcattaaacgaaggctctCgatcatgtctgcatactctt	6	10	5	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	7	82390016	82390016	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.15227	p.R5076Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	193	0	0	247	94	27.57	-	-	-	T	82390016	C	T	82390016	3	4	208	1	0	0	0	0	1	0	0	0	11656	884	31	1	209	1	PCLO	7	82390016	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		82390016	76748647	44	12769										
SRRT	0	genome.wustl.edu	37	chr7	100485916	100485916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cagtccccacaggaggccctCcatacccccatgccccgtat	7	20	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	7	100485916	100485916	C	T	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.2464	p.P822S	0.999	pfam_Arsenite-R_2	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	49	0	0	51	46	47.42	-	-	-	T	100485916	C	T	100485916	3	4	208	1	0	0	0	0	1	0	0	0	15263	855	30	2	2537	2	SRRT	7	100485916	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	18095900	100485916	58652747	45	12770										
METTL2B	0	genome.wustl.edu	37	chr7	128133877	128133877	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gacaaattcagaatatgatcCttctcggtgttttgcctttg	8	8	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	7	128133877	128133877	C	G	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	missense	c.689	p.P230R	1.000	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	122	0	0	444	108	19.57	-	-	-	G	128133877	C	G	128133877	3	3	208	1	0	0	0	0	1	0	0	0	9571	681	24	4	711	4	METTL2B	7	128133877	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	27647961	128133877	31004786	46	12771										
CALD1	0	genome.wustl.edu	37	chr7	134625906	134625906	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aagttaagagcttcatggatCgaaagaagggatttacagaa	11	4	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	7	134625906	134625906	C	G	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.763	p.R255G	0.997	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	151	0	0	166	97	36.88	-	-	-	G	134625906	C	G	134625906	3	3	208	1	0	0	0	0	1	0	0	0	2606	876	31	3	1525	3	CALD1	7	134625906	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	6492029	134625906	24512757	47	12772										
KCNU1	0	genome.wustl.edu	37	chr8	36780034	36780034	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cttccaacattcactttattGaacagcttggtggactggaa	8	9	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	8	36780034	36780034	G	A	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.2623	p.E875K	0.996	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	145	0	0	189	24	11.27	-	-	-	A	36780034	G	A	36780034	3	1	208	1	0	0	0	0	1	0	0	0	8147	1291	45	2	2717	2	KCNU1	8	36780034	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		36780034	109583988	48	12773										
SNTG1	0	genome.wustl.edu	37	chr8	51569549	51569549	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tccccgaccttcctggccctGaggggctcatgtctctacaa	9	16	2	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	8	51569549	51569549	G	A	SNP	SNTG1	ENST00000524004	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	0.743	NULL	pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNTG1	HGNC	ENSG00000147481	78	0	0	175	94	34.81	-	-	-	A	51569549	G	A	51569549	3	1	208	1	0	0	0	0	1	0	0	0	14963	1277	45	2	976	2	SNTG1	8	51569549	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	14789515	51569549	94794473	49	12774										
PKHD1L1	0	genome.wustl.edu	37	chr8	110457083	110457083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgtacttttgccaaacattgAcctggtgttgccaaatgcag	9	9	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	8	110457083	110457083	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.4985	p.D1662G	0.938	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	268	0	0	233	102	30.45	-	-	-	G	110457083	A	G	110457083	3	3	208	1	0	0	0	0	1	0	0	0	12046	275	10	5	5135	5	PKHD1L1	8	110457083	Missense_Mutation	SNP	A	TCGA-A8-A095-01A-11W-A019-09	58887534	110457083	35906939	50	12775										
NOV	0	genome.wustl.edu	37	chr8	120431514	120431514	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccaataggaaccgtcaatgtGagatgctgaaacagactcgg	11	9	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	8	120431514	120431514	G	A	SNP	NOV	ENST00000259526	human	ensembl	69_37n	1	known	missense	c.706	p.E236K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999	134	0	0	113	21	15.67	-	-	-	A	120431514	G	A	120431514	3	1	208	1	0	0	0	0	1	0	0	0	10625	1291	45	2	720	2	NOV	8	120431514	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	9974431	120431514	25932508	51	12776										
KIAA1432	0	genome.wustl.edu	37	chr9	5763849	5763849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ggatttggacacagctgcctCttaccttattatcttacagg	8	10	2	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	9	5763849	5763849	C	T	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.2585	p.S862F	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	274	0	0	510	88	14.69	-	-	-	T	5763849	C	T	5763849	3	4	208	1	0	0	0	0	1	0	0	0	8285	913	32	2	2655	2	KIAA1432	9	5763849	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		5763849	135449582	52	12777										
VCP	0	genome.wustl.edu	37	chr9	35065250	35065250	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	atcagggagaaaactcacctCtcgtttgataggctcccctt	8	12	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	9	35065250	35065250	C	G	SNP	VCP	ENST00000358901	human	ensembl	69_37n	-1	known	missense	c.574	p.E192Q	1.000	tigrfam_ATPase_AAA_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	47	0	0	46	17	26.98	-	-	-	G	35065250	C	G	35065250	3	3	208	1	0	0	0	0	1	0	0	0	17237	922	32	2	1898	2	VCP	9	35065250	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	29301401	35065250	106148181	53	12778										
SETX	0	genome.wustl.edu	37	chr9	135211682	135211682	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tagtgtaggaataatactcaCctaaccaatagcttttgtag	7	7	1	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	9	135211682	135211682	C	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	splice_site	c.718+1	e4+1	1.000	-	-	-	no_errors	SETX	HGNC	ENSG00000107290	117	0	0	191	77	28.62	-	-	-	A	135211682	C	A	135211682	5	1	208	1	0	0	0	0	0	0	1	0	14229	521	18	4	7398	4	SETX	9	135211682	Splice_Site	SNP	C	TCGA-A8-A095-01A-11W-A019-09	100146432	135211682	6001749	54	12779										
TUBB8	0	genome.wustl.edu	37	chr10	93505	93505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cccggtactgctggctgcccCggctggtcagtggggcaaag	16	13	1	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	93505	93505	C	T	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	missense	c.827	p.R276Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	117	0	0	33	4	10.81	-	-	-	T	93505	C	T	93505	3	4	208	1	0	0	0	0	1	0	0	0	16858	652	23	1	511	1	TUBB8	10	93505	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		93505	135441242	55	12780										
FAM188A	0	genome.wustl.edu	37	chr10	15828635	15828635	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tctggatctaatttattcttCatgagatttatactacgggg	8	6	4	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	15828635	15828635	C	T	SNP	FAM188A	ENST00000277632	human	ensembl	69_37n	-1	known	missense	c.1041	p.M347I	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481	120	0	0	146	62	29.81	-	-	-	T	15828635	C	T	15828635	3	4	208	1	0	0	0	0	1	0	0	0	5555	826	29	2	308	2	FAM188A	10	15828635	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	15735130	15828635	119706112	56	12781										
ARHGAP21	0	genome.wustl.edu	37	chr10	24874831	24874831	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctgttttctgcccagtgtctCactttcttttttggactcct	6	12	3	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	24874831	24874831	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.4387	p.E1463K	0.005	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	376	0	0	471	196	29.34	-	-	-	T	24874831	C	T	24874831	3	4	208	1	0	0	0	0	1	0	0	0	873	835	29	2	1493	2	ARHGAP21	10	24874831	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	9046196	24874831	110659916	57	12782										
CCDC7	0	genome.wustl.edu	37	chr10	32856783	32856783	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctggtttcagattcaggtggAcaaaggacaagtgataaaat	11	5	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	32856783	32856783	A	G	SNP	CCDC7	ENST00000277657	human	ensembl	69_37n	1	known	silent	c.1383	p.G461	0.248	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	179	1	0.56	311	48	13.37	-	-	-	G	32856783	A	G	32856783	2	3	208	1	0	0	0	0	0	0	0	1	2869	262	10	5		5	CCDC7	10	32856783	Silent	SNP	A	TCGA-A8-A095-01A-11W-A019-09	7981952	32856783	102677964	58	12783										
IPMK	0	genome.wustl.edu	37	chr10	59997544	59997544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ggaggtggttgtaactgtttCaaaactgtgccatctggatg	13	6	2	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	59997544	59997544	C	G	SNP	IPMK	ENST00000373935	human	ensembl	69_37n	-1	known	missense	c.222	p.L74F	1.000	NULL	pfam_IPK	-	no_errors	IPMK	HGNC	ENSG00000151151	181	0	0	241	90	27.19	-	-	-	G	59997544	C	G	59997544	3	3	208	1	0	0	0	0	1	0	0	0	7846	825	29	2	1048	2	IPMK	10	59997544	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	27140761	59997544	75537203	59	12784										
KIAA0913	0	genome.wustl.edu	37	chr10	75549754	75549754	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tctcctggacgaactcctgtCttcccagtcaacagccatca	6	16	4	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	75549754	75549754	C	G	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.779	p.S260C	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	43	0	0	23	5	17.86	-	-	-	G	75549754	C	G	75549754	3	3	208	1	0	0	0	0	1	0	0	0	8252	913	32	2	801	2	KIAA0913	10	75549754	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	15552210	75549754	59984993	60	12785										
PNLIPRP1	0	genome.wustl.edu	37	chr10	118352049	118352049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gagctgggtgacagacatgtGcaaggtaggagccagctctg	16	8	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	10	118352049	118352049	G	A	SNP	PNLIPRP1	ENST00000358834	human	ensembl	69_37n	1	known	missense	c.326	p.C109Y	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021	127	0	0	149	72	32.58	-	-	-	A	118352049	G	A	118352049	3	1	208	1	0	0	0	0	1	0	0	0	12224	1319	46	4	336	4	PNLIPRP1	10	118352049	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	42802295	118352049	17182698	61	12786										
SIRT3	0	genome.wustl.edu	37	chr11	223832	223832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcccttcccctgccctccagCctcctccctgcacaggcctg	6	23	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	223832	223832	C	A	SNP	SIRT3	ENST00000529937	human	ensembl	69_37n	-1	known	missense	c.327	p.R109S	0.000	pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	10	0	0	24	7	21.88	-	-	-	A	223832	C	A	223832	3	1	208	1	0	0	0	0	1	0	0	0	14428	754	26	4		4	SIRT3	11	223832	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		223832	134782684	62	12787										
OR52N2	0	genome.wustl.edu	37	chr11	5841832	5841832	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	atgctgtgcatattctggttCaacctcaaggagattgactt	9	8	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	5841832	5841832	C	T	SNP	OR52N2	ENST00000317037	human	ensembl	69_37n	1	known	silent	c.267	p.F89	0.166	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988	306	0	0	302	98	24.5	-	-	-	T	5841832	C	T	5841832	2	4	208	1	0	0	0	0	0	0	0	1	11201	825	29	2		2	OR52N2	11	5841832	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	5618000	5841832	129164684	63	12788										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57088085	57088085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	caggggaccccggggaggccGaggcccaacaggcaccagca	16	15	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	57088085	57088085	G	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.196	p.R66W	0.952	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	15	0	0	13	5	27.78	-	-	-	A	57088085	G	A	57088085	3	1	208	1	0	0	0	0	1	0	0	0	16415	1057	37	1	5029	1	TNKS1BP1	11	57088085	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	51246253	57088085	77918431	64	12789										
OSBP	0	genome.wustl.edu	37	chr11	59367985	59367985	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ttaccggcatggggatcttaGagagttcttttccaatgcag	11	8	2	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	59367985	59367985	G	C	SNP	OSBP	ENST00000263847	human	ensembl	69_37n	-1	known	missense	c.1295	p.S432C	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP	HGNC	ENSG00000110048	236	0	0	294	115	28.05	-	-	-	C	59367985	G	C	59367985	3	2	208	1	0	0	0	0	1	0	0	0	11346	942	33	2	1160	2	OSBP	11	59367985	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	2279900	59367985	75638531	65	12790										
DAK	0	genome.wustl.edu	37	chr11	61106623	61106623	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ggcagcatcctggcagccatCagggccgtggcccaggccgg	16	15	1	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	61106623	61106623	C	T	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	silent	c.279	p.I93	0.996	pfam_Dak1,tigrfam_DhaK_ATP	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	8	0	0	18	14	43.75	-	-	-	T	61106623	C	T	61106623	2	4	208	1	0	0	0	0	0	0	0	1	4260	816	29	2		2	DAK	11	61106623	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	1738638	61106623	73899893	66	12791										
RBM14	0	genome.wustl.edu	37	chr11	66391892	66391892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccctggaactggtggcttctCtgccaccttcgactaccagc	9	16	1	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	66391892	66391892	C	G	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.545	p.S182C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	49	0	0	60	33	35.48	-	-	-	G	66391892	C	G	66391892	3	3	208	1	0	0	0	0	1	0	0	0	13198	913	32	2	551	2	RBM14	11	66391892	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	5285269	66391892	68614624	67	12792										
RBM14	0	genome.wustl.edu	37	chr11	66392021	66392021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccgttcacctccccgagcctCttatgtggctcctctgacgg	9	17	3	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	66392021	66392021	C	G	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.674	p.S225C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	26	0	0	84	33	28.21	-	-	-	G	66392021	C	G	66392021	3	3	208	1	0	0	0	0	1	0	0	0	13198	913	32	2	680	2	RBM14	11	66392021	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	129	66392021	68614495	68	12793										
ALDH3B1	0	genome.wustl.edu	37	chr11	67787235	67787235	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aggagacggggcagctgctaGagcacaggttcgactacatc	14	10	0	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	11	67787235	67787235	G	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	32	0	0	25	6	19.35	-	-	-	C	67787235	G	C	67787235	1	2	208	0	1	0	0	0	0	0	0	0	499	943	33	2		2	ALDH3B1	11	67787235	RNA	SNP	G	TCGA-A8-A095-01A-11W-A019-09	1395214	67787235	67219281	69	12794										
SLCO1A2	0	genome.wustl.edu	37	chr12	21453307	21453307	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtgattccatatttttccttCttgacctcttctttttgttt	4	9	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	12	21453307	21453307	C	T	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	silent	c.885	p.K295	0.013	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	138	0	0	156	46	22.77	-	-	-	T	21453307	C	T	21453307	2	4	208	1	0	0	0	0	0	0	0	1	14811	912	32	2		2	SLCO1A2	12	21453307	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09		21453307	112398588	70	12795										
GPD1	0	genome.wustl.edu	37	chr12	50503243	50503243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctgtgtacaaggtgtgctacGagggccagccagtgggtgaa	16	8	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	12	50503243	50503243	G	A	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	missense	c.991	p.E331K	0.997	pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	70	0	0	101	25	19.84	-	-	-	A	50503243	G	A	50503243	3	1	208	1	0	0	0	0	1	0	0	0	6654	1059	37	1	1021	1	GPD1	12	50503243	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	29049936	50503243	83348652	71	12796										
LIMA1	0	genome.wustl.edu	37	chr12	50598427	50598427	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ttctgagaggcgtggaagttCcagatttcgtctactctcat	10	9	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	12	50598427	50598427	C	G	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.772	p.E258Q	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	96	0	0	156	50	24.27	-	-	-	G	50598427	C	G	50598427	3	3	208	1	0	0	0	0	1	0	0	0	8851	864	30	2	1534	2	LIMA1	12	50598427	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	95184	50598427	83253468	72	12797										
GLT1D1	0	genome.wustl.edu	37	chr12	129383811	129383811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gctttcacagagtcaatgaaGgaaatggcacaagcgcagtg	12	8	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	12	129383811	129383811	G	A	SNP	GLT1D1	ENST00000442111	human	ensembl	69_37n	1	known	silent	c.354	p.K118	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	GLT1D1	HGNC	ENSG00000151948	170	0	0	302	82	21.35	-	-	-	A	129383811	G	A	129383811	2	1	208	1	0	0	0	0	0	0	0	1	6517	991	35	4		4	GLT1D1	12	129383811	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	78785384	129383811	4468084	73	12798										
SACS	0	genome.wustl.edu	37	chr13	23911264	23911264	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	caaaagacaaactatatcttGatgttcagctgtataaaggt	7	6	2	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	13	23911264	23911264	G	C	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.6751	p.Q2251E	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	74	0	0	76	52	40.62	-	-	-	C	23911264	G	C	23911264	3	2	208	1	0	0	0	0	1	0	0	0	13890	1299	45	2	6992	2	SACS	13	23911264	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		23911264	91258614	74	12799										
RB1	0	genome.wustl.edu	37	chr13	49050906	49050906	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtgtgctcaaaagaagtgctGaaggaagcaaccctcctaaa	10	9	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	13	49050906	49050906	G	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.2590	p.E864*	1.000	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	169	0	0	92	86	48.31	-	-	-	T	49050906	G	T	49050906	4	4	208	1	0	0	0	0	0	1	0	0	13181	1291	45	2	2688	2	RB1	13	49050906	Nonsense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	25139642	49050906	66118972	75	12800										
WDFY2	0	genome.wustl.edu	37	chr13	52329500	52329500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctttatttgacaagacccctGaatggttggacagtgattcc	9	9	0	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	13	52329500	52329500	G	A	SNP	WDFY2	ENST00000298125	human	ensembl	69_37n	1	known	missense	c.838	p.E280K	1.000	superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY2	HGNC	ENSG00000139668	102	0	0	73	79	51.97	-	-	-	A	52329500	G	A	52329500	3	1	208	1	0	0	0	0	1	0	0	0	17366	1291	45	2	872	2	WDFY2	13	52329500	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	3278594	52329500	62840378	76	12801										
C14orf182	0	genome.wustl.edu	37	chr14	50459793	50459793	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ttaacctcccagcagagagtCacggtggctgtgcctgcact	11	13	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	14	50459793	50459793	C	T	SNP	C14orf182	ENST00000533506	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	C14orf182	HGNC	ENSG00000214900	11	0	0	14	4	22.22	-	-	-	T	50459793	C	T	50459793	1	4	208	0	1	0	0	0	0	0	0	0	1777	841	29	2		2	C14orf182	14	50459793	RNA	SNP	C	TCGA-A8-A095-01A-11W-A019-09		50459793	56889747	77	12802										
STON2	0	genome.wustl.edu	37	chr14	81743560	81743560	+	Frame_Shift_Del	DEL	C	C	-													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gctctgcacctccacctctgCcccattgacacttgtggccg							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	14	81743560	81743560	C	-	DEL	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	frame_shift_del	c.2095	p.A699fs	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	133	0	0	125	54	30	-	-	-	-	81743560	C	-	81743560	7	5	208	1	0	1	0	1	0	0	0	0	15409	739	26	0	628	0	STON2	14	81743560	Frame_Shift_Del	DEL	C	TCGA-A8-A095-01A-11W-A019-09	31283767	81743560	25605980	78	12803										
CCDC88C	0	genome.wustl.edu	37	chr14	91772201	91772201	+	Frame_Shift_Del	DEL	T	T	-													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	caagatctggctgctgaaggTcacgttctgggtctccaggt							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	14	91772201	91772201	T	-	DEL	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	frame_shift_del	c.3265	p.T1089fs	0.710	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	17	0	0	33	46	56.1	-	-	-	-	91772201	T	-	91772201	7	5	208	1	0	1	0	1	0	0	0	0	2892	1667	58	0	2869	0	CCDC88C	14	91772201	Frame_Shift_Del	DEL	T	TCGA-A8-A095-01A-11W-A019-09	10028641	91772201	15577339	79	12804										
CASC5	0	genome.wustl.edu	37	chr15	40917571	40917571	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ggatctgttgcaggtaaactGaacctaagtccttctcaata	8	9	2	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	15	40917571	40917571	G	A	SNP	CASC5	ENST00000526913	human	ensembl	69_37n	1	known	missense	c.2242	p.E748K	0.043	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CASC5	HGNC	ENSG00000137812	139	0	0	248	28	10.14	-	-	-	A	40917571	G	A	40917571	3	1	208	1	0	0	0	0	1	0	0	0	2688	1277	45	2	5225	2	CASC5	15	40917571	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		40917571	61613821	80	12805										
TP53BP1	0	genome.wustl.edu	37	chr15	43724569	43724569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gaaacagtttctgggaccctCaaggaacactccatggtttg	10	10	2	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	15	43724569	43724569	C	G	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.3498	p.L1166F	0.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	178	1	0.56	223	96	30.09	-	-	-	G	43724569	C	G	43724569	3	3	208	1	0	0	0	0	1	0	0	0	16479	825	29	2	2483	2	TP53BP1	15	43724569	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	2806998	43724569	58806823	81	12806										
CGNL1	0	genome.wustl.edu	37	chr15	57746010	57746010	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gacagggagaagggagctctGattgaggtaagcagggctgt	18	5	1	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	15	57746010	57746010	G	A	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	silent	c.2184	p.L728	1.000	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	49	0	0	156	51	24.64	-	-	-	A	57746010	G	A	57746010	2	1	208	1	0	0	0	0	0	0	0	1	3333	1277	45	2		2	CGNL1	15	57746010	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	14021441	57746010	44785382	82	12807										
CA12	0	genome.wustl.edu	37	chr15	63638802	63638802	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccttggaactcgaggggcgtGaggctggcgtcatactggag	17	9	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	15	63638802	63638802	G	A	SNP	CA12	ENST00000178638	human	ensembl	69_37n	-1	known	silent	c.213	p.L71	0.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA12	HGNC	ENSG00000074410	58	0	0	77	29	27.36	-	-	-	A	63638802	G	A	63638802	2	1	208	1	0	0	0	0	0	0	0	1	2538	1277	45	2		2	CA12	15	63638802	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5892792	63638802	38892590	83	12808										
LMAN1L	0	genome.wustl.edu	37	chr15	75116744	75116744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ccagcccccaagggcctcctCgtgcctgcagcctggcatct	10	19	1	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	15	75116744	75116744	C	T	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	missense	c.1376	p.S459L	0.002	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	62	0	0	44	17	27.87	-	-	-	T	75116744	C	T	75116744	3	4	208	1	0	0	0	0	1	0	0	0	8893	893	31	1	1426	1	LMAN1L	15	75116744	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	11477942	75116744	27414648	84	12809										
PRKCB	0	genome.wustl.edu	37	chr16	24043543	24043543	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gggtcactgctgtatggactCatccaccaggggatgaaatg	13	9	2	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	16	24043543	24043543	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	silent	c.375	p.L125	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	47	0	0	78	52	40	-	-	-	T	24043543	C	T	24043543	2	4	208	1	0	0	0	0	0	0	0	1	12589	813	29	2		2	PRKCB	16	24043543	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09		24043543	66311210	85	12810										
FBXL19	0	genome.wustl.edu	37	chr16	30941589	30941589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtgaggacgaagcccccggcGaggcccggaatgggcgacgg	19	12	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	16	30941589	30941589	G	A	SNP	FBXL19	ENST00000380310	human	ensembl	69_37n	1	known	missense	c.1045	p.E349K	0.982	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	FBXL19	HGNC	ENSG00000099364	23	0	0	22	26	54.17	-	-	-	A	30941589	G	A	30941589	3	1	208	1	0	0	0	0	1	0	0	0	5761	1059	37	1	1071	1	FBXL19	16	30941589	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	6898046	30941589	59413164	86	12811										
N4BP1	0	genome.wustl.edu	37	chr16	48576901	48576901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gtctattttcagtctttgctCtgagtcagggaagatcttca	9	8	7	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	16	48576901	48576901	C	G	SNP	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	missense	c.2605	p.E869Q	0.983	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	77	0	0	50	49	49.49	-	-	-	G	48576901	C	G	48576901	3	3	208	1	0	0	0	0	1	0	0	0	10181	922	32	2	89	2	N4BP1	16	48576901	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	17635312	48576901	41777852	87	12812										
ZNF276	0	genome.wustl.edu	37	chr16	89789056	89789057	+	Frame_Shift_Ins	INS	-	-	G													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agcatggagaggccatccgcINSagaggagcgcgtgctcgtac							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	16	89789056	89789057	-	G	INS	ZNF276	ENST00000443381	human	ensembl	69_37n	1	known	frame_shift_ins	c.323_324	p.E109fs	0.856:0.791	pfam_Znf_AD	pfam_Znf_AD,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF276	HGNC	ENSG00000158805	9	0	0	4	2	33.33	-	-	-	G	89789057	-	G	89789056	7	5	208	1	0	1	1	0	0	0	0	0	17907	710	25	0	329	0	ZNF276	16	89789056	Frame_Shift_Ins	INS	-	TCGA-A8-A095-01A-11W-A019-09	41212155	89789056	565697	88	12813										
PRPF8	0	genome.wustl.edu	37	chr17	1580966	1580966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cggcagcccagaagccacagCcaggacccttccctacaggg	11	17	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	1580966	1580966	C	A	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.1877	p.G626V	1.000	pfam_PROCN	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	74	0	0	113	61	34.86	-	-	-	A	1580966	C	A	1580966	3	1	208	1	0	0	0	0	1	0	0	0	12656	739	26	4	5250	4	PRPF8	17	1580966	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		1580966	79614244	89	12814										
ASPA	0	genome.wustl.edu	37	chr17	3392582	3392582	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgagagctgatatcttggatCaaatgagaaaaatgattaaa	9	3	2	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	3392582	3392582	C	T	SNP	ASPA	ENST00000263080	human	ensembl	69_37n	1	known	nonsense	c.580	p.Q194*	1.000	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ASPA	HGNC	ENSG00000108381	171	0	0	370	136	26.88	-	-	-	T	3392582	C	T	3392582	4	4	208	1	0	0	0	0	0	1	0	0	1054	827	29	2	594	2	ASPA	17	3392582	Nonsense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	1811616	3392582	77802628	90	12815										
STARD3	0	genome.wustl.edu	37	chr17	37818592	37818595	+	Frame_Shift_Del	DEL	CTCA	CTCA	-													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tctggattcttaatacagatCtcaaggtggggtgctggggg							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	CTCA	CTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	37818592	37818595	CTCA	-	DEL	STARD3	ENST00000336308	human	ensembl	69_37n	1	known	frame_shift_del	c.1228_1231	p.L410fs	1.000:1.000:1.000:1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	pfam_MENTAL,pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	13	0	0	5	76	69.72	-	-	-	-	37818595	CTCA	-	37818592	7	5	208	1	0	1	0	1	0	0	0	0	15348	913	32	0	1291	0	STARD3	17	37818592	Frame_Shift_Del	DEL	CTCA	TCGA-A8-A095-01A-11W-A019-09	34426010	37818592	43376618	91	12816	151	2								
STARD3	0	genome.wustl.edu	37	chr17	37818596	37818597	+	Frame_Shift_Ins	INS	-	-	GT													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	attcttaatacagatctcaaINSggtggggtgctggggggctg							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	37818596	37818597	-	GT	INS	STARD3	ENST00000336308	human	ensembl	69_37n	1	known	frame_shift_ins	c.1232_1233	p.G412fs	1.000:1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	pfam_MENTAL,pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	11	0	0	13	75	85.23	-	-	-	GT	37818597	-	GT	37818596	7	5	208	1	0	1	1	0	0	0	0	0	15348	86	3	0	1295	0	STARD3	17	37818596	Frame_Shift_Ins	INS	-	TCGA-A8-A095-01A-11W-A019-09	4	37818596	43376614	92	12817	151	2								
KRT35	0	genome.wustl.edu	37	chr17	39637326	39637326	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agagacccagaagagaagccGgccttgaggcatttggaagc	14	9	0	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	39637326	39637326	G	T	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	silent	c.24	p.A8	0.002	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	29	0	0	25	14	35.9	-	-	-	T	39637326	G	T	39637326	2	4	208	1	0	0	0	0	0	0	0	1	8525	1103	39	3		3	KRT35	17	39637326	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	1818730	39637326	41557884	93	12818										
OTOP2	0	genome.wustl.edu	37	chr17	72929469	72929469	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aatgctcctctctccacacaGctgtggatcatgcctgcctt	7	15	2	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	72929469	72929469	G	A	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	splice_site	c.1519-1	e6-1	1.000	-	-	-	no_errors	OTOP2	HGNC	ENSG00000183034	57	0	0	94	14	12.96	-	-	-	A	72929469	G	A	72929469	5	1	208	1	0	0	0	0	0	0	1	0	11379	985	34	4	1540	4	OTOP2	17	72929469	Splice_Site	SNP	G	TCGA-A8-A095-01A-11W-A019-09	33292143	72929469	8265741	94	12819										
RNF213	0	genome.wustl.edu	37	chr17	78321847	78321847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgcaggtcatagagaggcagGgtccccgggccttgacggag	17	10	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	17	78321847	78321847	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.9712	p.G3238S	0.002	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	26	0	0	15	4	21.05	-	-	-	A	78321847	G	A	78321847	3	1	208	1	0	0	0	0	1	0	0	0	13563	1232	43	4	10141	4	RNF213	17	78321847	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5392378	78321847	2873363	95	12820										
CREB3L3	0	genome.wustl.edu	37	chr19	4154928	4154928	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gcctgctccatggaccccatCgacagctttgagctcctgga	10	15	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	4154928	4154928	C	G	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.60	p.I20M	0.010	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	43	0	0	89	19	17.59	-	-	-	G	4154928	C	G	4154928	3	3	208	1	0	0	0	0	1	0	0	0	3888	874	31	3	66	3	CREB3L3	19	4154928	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09		4154928	54974055	96	12821										
GTF2F1	0	genome.wustl.edu	37	chr19	6380409	6380409	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ctgctcagccctgtcttcttGgtctggaactttttcagcag	9	12	5	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	6380409	6380409	G	C	SNP	GTF2F1	ENST00000394456	human	ensembl	69_37n	-1	known	silent	c.1437	p.T479	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651	175	0	0	149	68	31.19	-	-	-	C	6380409	G	C	6380409	2	2	208	1	0	0	0	0	0	0	0	1	6909	1335	47	4		4	GTF2F1	19	6380409	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	2225481	6380409	52748574	97	12822										
ZNF266	0	genome.wustl.edu	37	chr19	9524014	9524014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cgaaaggaactggaagaactGaaggctttcccgcactcctt	10	11	0	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	9524014	9524014	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	69_37n	-1	known	silent	c.1587	p.F529	0.099	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652	185	0	0	144	70	32.71	-	-	-	A	9524014	G	A	9524014	2	1	208	1	0	0	0	0	0	0	0	1	17901	1281	45	2		2	ZNF266	19	9524014	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	3143605	9524014	49604969	98	12823										
ZNF266	0	genome.wustl.edu	37	chr19	9524258	9524258	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgtgattattaagactggagGaatgcgtaaatgctttacca	10	5	0	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	9524258	9524258	G	T	SNP	ZNF266	ENST00000361151	human	ensembl	69_37n	-1	known	missense	c.1343	p.S448Y	0.000	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652	144	0	0	145	72	33.18	-	-	-	T	9524258	G	T	9524258	3	4	208	1	0	0	0	0	1	0	0	0	17901	1174	41	2	310	2	ZNF266	19	9524258	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	244	9524258	49604725	99	12824										
ANGPTL6	0	genome.wustl.edu	37	chr19	10204185	10204186	+	Frame_Shift_Ins	INS	-	-	C													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	agtgggcacgtgctccacggINScccccccagtcctccaggag							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	10204185	10204186	-	C	INS	ANGPTL6	ENST00000253109	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1062_1061	p.R355fs	0.996:1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL6	HGNC	ENSG00000130812	57	0	0	31	4	11.43	-	-	-	C	10204186	-	C	10204185	7	5	208	1	0	1	1	0	0	0	0	0	618	1190	42	0	358	0	ANGPTL6	19	10204185	Frame_Shift_Ins	INS	-	TCGA-A8-A095-01A-11W-A019-09	679927	10204185	48924798	100	12825										
ZNF443	0	genome.wustl.edu	37	chr19	12541839	12541839	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tccagtgtgagttctttcatGactttgcagtgaactaggac	10	8	2	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	12541839	12541839	G	C	SNP	ZNF443	ENST00000301547	human	ensembl	69_37n	-1	known	missense	c.1147	p.H383D	0.374	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	590	0	0	922	368	28.48	-	-	-	C	12541839	G	C	12541839	3	2	208	1	0	0	0	0	1	0	0	0	18012	1290	45	2	872	2	ZNF443	19	12541839	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	2337654	12541839	46587144	101	12826										
ZNF43	0	genome.wustl.edu	37	chr19	21990459	21990459	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tgtcaaaatcactgtcacatCttcaggtttgtagagtttct	7	8	6	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	21990459	21990459	C	G	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.2380	p.D794H	0.015	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	101	0	0	201	90	30.93	-	-	-	G	21990459	C	G	21990459	3	3	208	1	0	0	0	0	1	0	0	0	17999	913	32	2	53	2	ZNF43	19	21990459	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	9448620	21990459	37138524	102	12827										
DPY19L3	0	genome.wustl.edu	37	chr19	32923705	32923705	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	atgctgcaggctccaaccctCgtgcaaggtaattacaactg	9	12	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	32923705	32923705	C	T	SNP	DPY19L3	ENST00000342179	human	ensembl	69_37n	1	known	silent	c.321	p.L107	0.427	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	76	0	0	122	46	27.38	-	-	-	T	32923705	C	T	32923705	2	4	208	1	0	0	0	0	0	0	0	1	4777	871	31	1		1	DPY19L3	19	32923705	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	10933246	32923705	26205278	103	12828										
FCGBP	0	genome.wustl.edu	37	chr19	40392482	40392482	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ggatccaccagcttgtggcaAgaggacagtggccctgtggg	16	10	0	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	40392482	40392482	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.8022	p.S2674	0.739	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	34	0	0	69	9	11.54	-	-	-	G	40392482	A	G	40392482	2	3	208	1	0	0	0	0	0	0	0	1	5824	59	3	5		5	FCGBP	19	40392482	Silent	SNP	A	TCGA-A8-A095-01A-11W-A019-09	7468777	40392482	18736501	104	12829										
FCGBP	0	genome.wustl.edu	37	chr19	40424194	40424194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gcatgccacagagtcggtcgCcctcatagtgttgggcctgg	14	12	1	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	40424194	40424194	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.2009	p.G670D	0.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	55	0	0	62	25	28.74	-	-	-	T	40424194	C	T	40424194	3	4	208	1	0	0	0	0	1	0	0	0	5824	739	26	4	14340	4	FCGBP	19	40424194	Missense_Mutation	SNP	C	TCGA-A8-A095-01A-11W-A019-09	31712	40424194	18704789	105	12830										
ZNF616	0	genome.wustl.edu	37	chr19	52619379	52619379	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tatggtttctttcctgcatgGattacctgatgtacagtgag	10	7	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	52619379	52619379	G	C	SNP	ZNF616	ENST00000330123	human	ensembl	69_37n	-1	known	missense	c.1038	p.I346M	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	276	0	0	511	197	27.75	-	-	-	C	52619379	G	C	52619379	3	2	208	1	0	0	0	0	1	0	0	0	18137	1164	41	2	1311	2	ZNF616	19	52619379	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	12195185	52619379	6509604	106	12831										
DUXA	0	genome.wustl.edu	37	chr19	57672085	57672085	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	ataacctgggtaaggcttttGattgaaggtattgatgagga	13	3	0	4			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	57672085	57672085	G	C	SNP	DUXA	ENST00000554048	human	ensembl	69_37n	-1	known	missense	c.106	p.Q36E	0.007	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	DUXA	HGNC	ENSG00000258873	117	0	0	177	69	27.94	-	-	-	C	57672085	G	C	57672085	3	2	208	1	0	0	0	0	1	0	0	0	4869	1299	45	2	528	2	DUXA	19	57672085	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5052706	57672085	1456898	107	12832										
ZNF324	0	genome.wustl.edu	37	chr19	58982714	58982714	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cacaccggggagcggccctaCgagtgcgcccagtgcggcaa	15	15	0	0			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	19	58982714	58982714	C	T	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	silent	c.855	p.Y285	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	32	0	0	31	4	11.43	-	-	-	T	58982714	C	T	58982714	2	4	208	1	0	0	0	0	0	0	0	1	17940	547	19	1		1	ZNF324	19	58982714	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	1310629	58982714	146269	108	12833										
TMEM50B	0	genome.wustl.edu	37	chr21	34832793	34832793	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	aacatcaacatgaaaccaatGaaaagccaaactcgagcacc	5	12	1	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	21	34832793	34832793	G	A	SNP	TMEM50B	ENST00000441128	human	ensembl	69_37n	-1	known	missense	c.119	p.S40L	1.000	NULL	NULL	-	no_errors	TMEM50B	HGNC	ENSG00000142188	132	0	0	149	58	28.02	-	-	-	A	34832793	G	A	34832793	3	1	208	1	0	0	0	0	1	0	0	0	16271	1281	45	2	188	2	TMEM50B	21	34832793	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		34832793	13297102	109	12834										
LCA5L	0	genome.wustl.edu	37	chr21	40792688	40792688	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	cagagtcttggtagctgtctGagctgctaaagtcttccgag	12	9	3	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	21	40792688	40792688	G	C	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.919	p.Q307E	0.006	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	102	0	0	100	53	34.42	-	-	-	C	40792688	G	C	40792688	3	2	208	1	0	0	0	0	1	0	0	0	8711	1299	45	2	1113	2	LCA5L	21	40792688	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	5959895	40792688	7337207	110	12835										
UBASH3A	0	genome.wustl.edu	37	chr21	43862566	43862566	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	attctgttgaatccagaactCaaactggagaaaaaaatcaa	6	7	3	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	21	43862566	43862566	C	G	SNP	UBASH3A	ENST00000319294	human	ensembl	69_37n	1	known	silent	c.1491	p.L497	1.000	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185	219	0	0	426	168	28.28	-	-	-	G	43862566	C	G	43862566	2	3	208	1	0	0	0	0	0	0	0	1	16936	813	29	2		2	UBASH3A	21	43862566	Silent	SNP	C	TCGA-A8-A095-01A-11W-A019-09	3069878	43862566	4267329	111	12836										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31839047	31839047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tttgctctcgtacatcttacGaatcactgaggtaggggtaa	10	8	3	1			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	22	31839047	31839047	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.2107	p.R703C	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	128	0	0	259	29	10.07	-	-	-	A	31839047	G	A	31839047	3	1	208	1	0	0	0	0	1	0	0	0	5072	1058	37	1	866	1	EIF4ENIF1	22	31839047	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09		31839047	19465519	112	12837										
NPTXR	0	genome.wustl.edu	37	chr22	39222669	39222670	+	Frame_Shift_Ins	INS	-	-	A													0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	gcgtagagctcgggcagagcINScttccgcacgcgggcgtaca							TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	22	39222669	39222670	-	A	INS	NPTXR	ENST00000333039	human	ensembl	69_37n	-1	known	frame_shift_ins	c.934_933	p.A311fs	0.976:0.998	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	32	0	0	44	24	35.29	-	-	-	A	39222670	-	A	39222669	7	5	208	1	0	1	1	0	0	0	0	0	10677	739	26	0	580	0	NPTXR	22	39222669	Frame_Shift_Ins	INS	-	TCGA-A8-A095-01A-11W-A019-09	7383622	39222669	12081897	113	12838										
KAL1	0	genome.wustl.edu	37	chrX	8553429	8553429	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcagtcagttgaactcgctcGtctgtggtctgaggggacat	13	9	4	2			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	X	8553429	8553429	G	A	SNP	KAL1	ENST00000262648	human	ensembl	69_37n	-1	known	silent	c.735	p.D245	0.873	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_4-disulphide_core	-	no_errors	KAL1	HGNC	ENSG00000011201	140	0	0	126	43	25.29	-	-	-	A	8553429	G	A	8553429	2	1	208	1	0	0	0	0	0	0	0	1	8028	1136	40	1		1	KAL1	23	8553429	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09		8553429	146717131	114	12839										
MAGEB1	0	genome.wustl.edu	37	chrX	30269534	30269534	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tcccattatgaagaggctttGagagatgaggaagagagagc	14	5	0	7			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	X	30269534	30269534	G	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	silent	c.924	p.L308	0.002	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	205	0	0	233	58	19.93	-	-	-	A	30269534	G	A	30269534	2	1	208	1	0	0	0	0	0	0	0	1	9243	1281	45	2		2	MAGEB1	23	30269534	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	21716105	30269534	125001026	115	12840										
AKAP4	0	genome.wustl.edu	37	chrX	49958365	49958365	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	acctgatttgcataaaccatGagccccttgctgatggaatc	8	11	0	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	X	49958365	49958365	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.999	p.L333	0.470	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	126	0	0	213	33	13.41	-	-	-	A	49958365	G	A	49958365	2	1	208	1	0	0	0	0	0	0	0	1	453	1277	45	2		2	AKAP4	23	49958365	Silent	SNP	G	TCGA-A8-A095-01A-11W-A019-09	19688831	49958365	105312195	116	12841										
WNK3	0	genome.wustl.edu	37	chrX	54263737	54263737	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.491379310344828	57	7.25857095140791e-21	3.85311044121677	4.42372070779531	3.50036954915004	0.279592277252294	0.930327025915261	42	tctcacaagctgcgctgaaaGataagaagttgtcaccttgt	9	9	2	3			TCGA-A8-A095-01A-11W-A019-09	TCGA-A8-A095-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d16f025a-4187-4632-b833-02a3ffa54210	9dafa22c-39df-467b-920b-a1e42c820671	X	54263737	54263737	G	C	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.4262	p.S1421C	0.919	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	146	0	0	212	93	30.49	-	-	-	C	54263737	G	C	54263737	3	2	208	1	0	0	0	0	1	0	0	0	17476	942	33	2	1160	2	WNK3	23	54263737	Missense_Mutation	SNP	G	TCGA-A8-A095-01A-11W-A019-09	4305372	54263737	101006823	117	12842										
UBE4B	0	genome.wustl.edu	37	chr1	10231364	10231364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctggactgtgctcggttcGcgaaagccattgctgacgac	13	11	0	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	1	10231364	10231364	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.3502	p.A1168T	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	219	0	0	188	75	28.52	-	-	-	A	10231364	G	A	10231364	3	1	209	1	0	0	0	0	1	0	0	0	16980	1087	38	1	3600	1	UBE4B	1	10231364	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09		10231364	239019257	1	12843										
OXCT2	0	genome.wustl.edu	37	chr1	40235448	40235448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccccgtgctctttttgatgtCgtccaccgtcaggccctccc	8	18	2	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	1	40235448	40235448	C	T	SNP	OXCT2	ENST00000327582	human	ensembl	69_37n	-1	known	missense	c.1480	p.D494N	0.171	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754	16	0	0	32	15	31.91	-	-	-	T	40235448	C	T	40235448	3	4	209	1	0	0	0	0	1	0	0	0	11403	884	31	1	77	1	OXCT2	1	40235448	Missense_Mutation	SNP	C	TCGA-A8-A096-01A-11W-A019-09	30004084	40235448	209015173	2	12844										
PRRX1	0	genome.wustl.edu	37	chr1	170695530	170695530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttatctctcctgggggacagCgtctccgtacaggtgaatga	12	10	2	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	1	170695530	170695530	C	T	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.587	p.A196V	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	138	0	0	210	71	25.27	-	-	-	T	170695530	C	T	170695530	3	4	209	1	0	0	0	0	1	0	0	0	12692	768	27	1	597	1	PRRX1	1	170695530	Missense_Mutation	SNP	C	TCGA-A8-A096-01A-11W-A019-09	130460082	170695530	78555091	3	12845										
SIPA1L2	0	genome.wustl.edu	37	chr1	232651059	232651059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgcctagcttgtgcttctcTtcttgtgactgccttgggtc	10	12	2	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	1	232651059	232651059	T	G	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.27	p.E9D	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	181	0	0	247	69	21.77	-	-	-	G	232651059	T	G	232651059	3	3	209	1	0	0	0	0	1	0	0	0	14419	1606	56	5	5225	5	SIPA1L2	1	232651059	Missense_Mutation	SNP	T	TCGA-A8-A096-01A-11W-A019-09	61955529	232651059	16599562	4	12846										
RAPGEF4	0	genome.wustl.edu	37	chr2	173891808	173891808	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgttttcctttattttctaGctggagctaatctatcacac	5	9	3	0			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	2	173891808	173891808	G	C	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	splice_site	c.2380-1	e25-1	1.000	-	-	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	124	0	0	153	69	31.08	-	-	-	C	173891808	G	C	173891808	5	2	209	1	0	0	0	0	0	0	1	0	13129	985	34	4	2493	4	RAPGEF4	2	173891808	Splice_Site	SNP	G	TCGA-A8-A096-01A-11W-A019-09		173891808	69307565	5	12847										
PDE11A	0	genome.wustl.edu	37	chr2	178762823	178762823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taggagtaaaacagaacagcGttcacatttcagcagagttt	9	7	2	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	2	178762823	178762823	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.1264	p.R422C	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	334	0	0	337	121	26.42	-	-	-	A	178762823	G	A	178762823	3	1	209	1	0	0	0	0	1	0	0	0	11704	1145	40	1	1605	1	PDE11A	2	178762823	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09	4871015	178762823	64436550	6	12848										
TBL1XR1	0	genome.wustl.edu	37	chr3	176769296	176769297	+	Frame_Shift_Del	DEL	TA	TA	-													0	0	1	0	0	0	1	1	0	tcttgtctgagctcacttgcTatagtatgtgctccattctc							TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	3	176769296	176769297	TA	-	DEL	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	frame_shift_del	c.423_422	p.I141fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	177	0	0	171	54	23.68	-	-	-	-	176769297	TA	-	176769296	7	5	209	1	0	1	0	1	0	0	0	0	15735	1512	53	0	1169	0	TBL1XR1	3	176769296	Frame_Shift_Del	DEL	TA	TCGA-A8-A096-01A-11W-A019-09		176769296	21253134	7	12849	152	2								
TBL1XR1	0	genome.wustl.edu	37	chr3	176769299	176769300	+	Frame_Shift_Ins	INS	-	-	TG													0	0	1	0	0	0	1	1	0	gtctgagctcacttgctataINSgtatgtgctccattctcctc							TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	3	176769299	176769300	-	TG	INS	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	frame_shift_ins	c.420_419	p.A142fs	0.264:0.288	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	176	0	0	143	80	35.87	-	-	-	TG	176769300	-	TG	176769299	7	5	209	1	0	1	1	0	0	0	0	0	15735	407	15	0	1172	0	TBL1XR1	3	176769299	Frame_Shift_Ins	INS	-	TCGA-A8-A096-01A-11W-A019-09	3	176769299	21253131	8	12850	152	2								
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	231	0	0	200	66	24.81	-	-	-	G	178952085	A	G	178952085	3	3	209	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09	2182786	178952085	19070345	9	12851										
CSNK1G3	0	genome.wustl.edu	37	chr5	122911423	122911423	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctttttttcttaaaccaagAtttctcgcatggaatatgtc	5	8	3	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	5	122911423	122911423	A	G	SNP	CSNK1G3	ENST00000360683	human	ensembl	69_37n	1	known	missense	c.439	p.I147V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292	280	0	0	228	108	32.14	-	-	-	G	122911423	A	G	122911423	3	3	209	1	0	0	0	0	1	0	0	0	3988	347	12	5	457	5	CSNK1G3	5	122911423	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09		122911423	58003837	10	12852										
PRPF4B	0	genome.wustl.edu	37	chr6	4049302	4049302	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agatttcaaagagaatcccaAcctcagagataactggaccg	8	10	2	3			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	6	4049302	4049302	A	G	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.1988	p.N663S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	110	1	0.9	137	42	23.33	-	-	-	G	4049302	A	G	4049302	3	3	209	1	0	0	0	0	1	0	0	0	12654	43	2	5	2018	5	PRPF4B	6	4049302	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09		4049302	167065765	11	12853										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056062	26056062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcttgacaaccttgggctTagcggccttgggcttcacag	13	11	1	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	6	26056062	26056062	T	C	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	missense	c.595	p.K199E	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	80	0	0	125	39	23.78	-	-	-	C	26056062	T	C	26056062	3	2	209	1	0	0	0	0	1	0	0	0	7175	1763	61	5	50	5	HIST1H1C	6	26056062	Missense_Mutation	SNP	T	TCGA-A8-A096-01A-11W-A019-09	22006760	26056062	145059005	12	12854										
GRHL2	0	genome.wustl.edu	37	chr8	102571041	102571041	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcaaggacgcagccacagagGtgagtcccaggctccatcga	12	13	1	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	8	102571041	102571041	G	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	splice_site	c.678+1	e4+1	1.000	-	-	-	no_errors	GRHL2	HGNC	ENSG00000083307	69	0	0	61	32	34.41	-	-	-	T	102571041	G	T	102571041	5	4	209	1	0	0	0	0	0	0	1	0	6815	1275	44	4	693	4	GRHL2	8	102571041	Splice_Site	SNP	G	TCGA-A8-A096-01A-11W-A019-09		102571041	43792981	13	12855										
KIAA1984	0	genome.wustl.edu	37	chr9	139701290	139701291	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	gctcacgtacctggctgacaINSgagtgcagatggtgtccagg							TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	9	139701290	139701291	-	C	INS	KIAA1984	ENST00000338005	human	ensembl	69_37n	1	known	frame_shift_ins	c.1360_1361	p.R454fs	0.000:0.000	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	17	0	0	8	7	46.67	-	-	-	C	139701291	-	C	139701290	7	5	209	1	0	1	1	0	0	0	0	0	8318	180	7	0	1406	0	KIAA1984	9	139701290	Frame_Shift_Ins	INS	-	TCGA-A8-A096-01A-11W-A019-09		139701290	1512141	14	12856										
SACS	0	genome.wustl.edu	37	chr13	23912580	23912580	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccacgtggtacactctactGttttctgtgacaactcatct	7	12	4	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	13	23912580	23912580	G	C	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.5435	p.T1812R	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	249	0	0	176	75	29.88	-	-	-	C	23912580	G	C	23912580	3	2	209	1	0	0	0	0	1	0	0	0	13890	1377	48	4	8308	4	SACS	13	23912580	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09		23912580	91257298	15	12857										
SYNE2	0	genome.wustl.edu	37	chr14	64625506	64625506	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgagatgccaggtggagaAccttcaggtaaattaaccag	11	8	1	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	14	64625506	64625506	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.15956	p.N5319S	0.676	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	105	0	0	46	21	31.34	-	-	-	G	64625506	A	G	64625506	3	3	209	1	0	0	0	0	1	0	0	0	15538	43	2	5	16294	5	SYNE2	14	64625506	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09		64625506	42724034	16	12858										
CNGB1	0	genome.wustl.edu	37	chr16	57951250	57951250	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagtagatgaggtcgcatagGtaatccatcagcagccagtg	12	8	1	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	16	57951250	57951250	G	A	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.2088	p.Y696	1.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	74	0	0	55	36	39.13	-	-	-	A	57951250	G	A	57951250	2	1	209	1	0	0	0	0	0	0	0	1	3630	1256	44	4		4	CNGB1	16	57951250	Silent	SNP	G	TCGA-A8-A096-01A-11W-A019-09		57951250	32403503	17	12859										
CBFB	0	genome.wustl.edu	37	chr16	67100664	67100664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgatctccaaagactggatgGtatgggctgtctggagtttg	14	6	2	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	16	67100664	67100664	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.362	p.G121D	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	56	0	0	43	38	46.91	-	-	-	A	67100664	G	A	67100664	3	1	209	1	0	0	0	0	1	0	0	0	2724	1261	44	4	376	4	CBFB	16	67100664	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09	9149414	67100664	23254089	18	12860										
HELZ	0	genome.wustl.edu	37	chr17	65157188	65157188	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggatccaactgttcatcccAttgtctatggaaaataaaaa	6	8	2	0			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	17	65157188	65157188	A	C	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.1900	p.W634G	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	166	0	0	124	43	25.75	-	-	-	C	65157188	A	C	65157188	3	2	209	1	0	0	0	0	1	0	0	0	7100	217	8	5	4000	5	HELZ	17	65157188	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09		65157188	16038022	19	12861										
MYO5B	0	genome.wustl.edu	37	chr18	47432808	47432808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgcgggccaggtgtccccGgcagtacctctgcagggtta	14	14	1	0			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	18	47432808	47432808	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.2395	p.R799W	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	19	0	0	29	17	36.96	-	-	-	A	47432808	G	A	47432808	3	1	209	1	0	0	0	0	1	0	0	0	10151	1115	39	1	3239	1	MYO5B	18	47432808	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09		47432808	30644440	20	12862										
OR10H2	0	genome.wustl.edu	37	chr19	15839336	15839336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atggggatggtggtgacctcGgccattttccaactgacttt	12	9	0	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	19	15839336	15839336	G	A	SNP	OR10H2	ENST00000305899	human	ensembl	69_37n	1	known	silent	c.483	p.S161	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942	101	0	0	190	87	31.29	-	-	-	A	15839336	G	A	15839336	2	1	209	1	0	0	0	0	0	0	0	1	10979	1103	39	1		1	OR10H2	19	15839336	Silent	SNP	G	TCGA-A8-A096-01A-11W-A019-09		15839336	43289647	21	12863										
SLC17A7	0	genome.wustl.edu	37	chr19	49938068	49938069	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	cacgaagatgacacagccatINSagtggacgcgggcagctgag							TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	19	49938068	49938069	-	A	INS	SLC17A7	ENST00000221485	human	ensembl	69_37n	-1	known	frame_shift_ins	c.506_505	p.Y169fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888	60	0	0	38	21	35.59	-	-	-	A	49938069	-	A	49938068	7	5	209	1	0	1	1	0	0	0	0	0	14511	1406	49	0	1212	0	SLC17A7	19	49938068	Frame_Shift_Ins	INS	-	TCGA-A8-A096-01A-11W-A019-09	34098732	49938068	9190915	22	12864										
WNK3	0	genome.wustl.edu	37	chrX	54275401	54275401	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctcgggatagatgctagagAtgctgtgctcctgatagagc	13	8	1	4			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	X	54275401	54275401	A	G	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.3380	p.I1127T	0.260	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	340	0	0	301	115	27.64	-	-	-	G	54275401	A	G	54275401	3	3	209	1	0	0	0	0	1	0	0	0	17476	333	12	5	2054	5	WNK3	23	54275401	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09		54275401	100995159	23	12865										
OTUD6A	0	genome.wustl.edu	37	chrX	69282426	69282426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tactgcgccgccaccaacgcGagaggcaggagctgcaggcc	14	15	0	1			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	X	69282426	69282426	G	A	SNP	OTUD6A	ENST00000338352	human	ensembl	69_37n	1	known	missense	c.52	p.E18K	0.034	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401	9	0	0	21	10	32.26	-	-	-	A	69282426	G	A	69282426	3	1	209	1	0	0	0	0	1	0	0	0	11389	1059	37	1	54	1	OTUD6A	23	69282426	Missense_Mutation	SNP	G	TCGA-A8-A096-01A-11W-A019-09	15007025	69282426	85988134	24	12866										
IGSF1	0	genome.wustl.edu	37	chrX	130410201	130410201	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggacctggctgtgccaggAgagtgggtttggggtagaat	18	6	0	2			TCGA-A8-A096-01A-11W-A019-09	TCGA-A8-A096-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a411a0a-ec66-4d9f-b0e4-f1c1f969d605	6fc71cee-3a74-4d03-ac3c-da56af94dab7	X	130410201	130410201	A	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2645	p.L882H	1.000	pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	213	0	0	226	91	28.44	-	-	-	T	130410201	A	T	130410201	3	4	209	1	0	0	0	0	1	0	0	0	7650	304	11	5	1404	5	IGSF1	23	130410201	Missense_Mutation	SNP	A	TCGA-A8-A096-01A-11W-A019-09	61127775	130410201	24860359	25	12867										
CCDC27	0	genome.wustl.edu	37	chr1	3688024	3688025	+	Frame_Shift_Ins	INS	-	-	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agcagaaaggcgtcaaagtgINSccccccctgcaacagtcaga							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	3688024	3688025	-	C	INS	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	frame_shift_ins	c.1908_1909	p.L638fs	0.063:0.211	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	90	0	0	32	5	13.51	-	-	-	C	3688025	-	C	3688024	7	5	210	1	0	1	1	0	0	0	0	0	2827	1306	46	0	1954	0	CCDC27	1	3688024	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09		3688024	245562597	1	12868										
PHF13	0	genome.wustl.edu	37	chr1	6681554	6681554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcgagtgtaatgagtgccacAcctggattcacctgtcctgt	10	11	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	6681554	6681554	A	C	SNP	PHF13	ENST00000377648	human	ensembl	69_37n	1	known	missense	c.760	p.T254P	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273	88	0	0	22	7	23.33	-	-	-	C	6681554	A	C	6681554	3	2	210	1	0	0	0	0	1	0	0	0	11898	159	6	5	774	5	PHF13	1	6681554	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	2993530	6681554	242569067	2	12869										
TRNAU1AP	0	genome.wustl.edu	37	chr1	28904118	28904118	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cactggcagcccctggacacAgtgtcttcagagatccctgc	10	15	2	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	28904118	28904118	A	T	SNP	TRNAU1AP	ENST00000373830	human	ensembl	69_37n	1	known	silent	c.834	p.T278	0.273	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	65	0	0	23	21	47.73	-	-	-	T	28904118	A	T	28904118	2	4	210	1	0	0	0	0	0	0	0	1	16668	175	7	5		5	TRNAU1AP	1	28904118	Silent	SNP	A	TCGA-A8-A097-01A-11W-A050-09	22222564	28904118	220346503	3	12870										
COL16A1	0	genome.wustl.edu	37	chr1	32149769	32149769	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcctttggggccgggctgccCaggccgtcctgccatgtctg	14	15	1	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	32149769	32149769	C	A	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.2221	p.G741W	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	24	0	0	11	4	26.67	-	-	-	A	32149769	C	A	32149769	3	1	210	1	0	0	0	0	1	0	0	0	3703	594	21	4	2750	4	COL16A1	1	32149769	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	3245651	32149769	217100852	4	12871										
AMPD1	0	genome.wustl.edu	37	chr1	115223067	115223067	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aaggttgtctgttcggaaggGgtcctctcccttcttcacag	11	11	4	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	115223067	115223067	G	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.679	p.P227A	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	196	0	0	129	63	32.81	-	-	-	C	115223067	G	C	115223067	3	2	210	1	0	0	0	0	1	0	0	0	585	1232	43	4	1707	4	AMPD1	1	115223067	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	83073298	115223067	134027554	5	12872										
TCHHL1	0	genome.wustl.edu	37	chr1	152058564	152058564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tggtgactcagggtcctcccCctggtaaccatcctcctcct	8	17	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	152058564	152058564	C	T	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.1594	p.G532R	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	114	0	0	180	118	39.6	-	-	-	T	152058564	C	T	152058564	3	4	210	1	0	0	0	0	1	0	0	0	15796	623	22	4	1124	4	TCHHL1	1	152058564	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	36835497	152058564	97192057	6	12873										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	24	0	0	38	11	22.45	-	-	-	C	154842243	A	C	154842243	2	2	210	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-A8-A097-01A-11W-A050-09	2783679	154842243	94408378	7	12874	153	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	24	0	0	39	11	21.57	-	-	-	T	154842244	A	T	154842244	3	4	210	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	1	154842244	94408377	8	12875	153	2								
BIRC6	0	genome.wustl.edu	37	chr2	32824821	32824821	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tccaggttctaataactggtCcagcggacaccccttatgca	8	13	1	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	32824821	32824821	C	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.13846	p.P4616T	1.000	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	305	0	0	118	28	19.18	-	-	-	A	32824821	C	A	32824821	3	1	210	1	0	0	0	0	1	0	0	0	1443	855	30	2	14124	2	BIRC6	2	32824821	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		32824821	210374552	9	12876										
REG3G	0	genome.wustl.edu	37	chr2	79253897	79253897	+	Silent	SNP	G	G	A													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agctgtcccaaaggctccaaGgcctatggctccccctgcta							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	79253897	79253897	G	A	SNP	REG3G	ENST00000272324	human	ensembl	69_37n	1	known	silent	c.135	p.K45	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3G	HGNC	ENSG00000143954	624	0	0	216	40	15.62	-	-	-	A	79253897	G	A	79253897	2	1	210	1	0	0	0	0	0	0	0	1	13296	991	35	4		4	REG3G	2	79253897	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	46429076	79253897	163945476	10	12877	154	2								
REG3G	0	genome.wustl.edu	37	chr2	79253898	79253898	+	Missense_Mutation	SNP	G	G	T													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gctgtcccaaaggctccaagGcctatggctccccctgctat							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	79253898	79253898	G	T	SNP	REG3G	ENST00000272324	human	ensembl	69_37n	1	known	missense	c.136	p.A46S	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3G	HGNC	ENSG00000143954	622	0	0	216	40	15.62	-	-	-	T	79253898	G	T	79253898	3	4	210	1	0	0	0	0	1	0	0	0	13296	1203	42	4	142	4	REG3G	2	79253898	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	1	79253898	163945475	11	12878	154	2								
MRPS5	0	genome.wustl.edu	37	chr2	95767455	95767455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tccatccgatcagtagctttCccaatagaaaaacctttaaa	4	11	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	95767455	95767455	C	T	SNP	MRPS5	ENST00000345084	human	ensembl	69_37n	-1	known	missense	c.686	p.G229E	1.000	NULL	NULL	-	no_errors	MRPS5	HGNC	ENSG00000144029	157	0	0	64	15	18.99	-	-	-	T	95767455	C	T	95767455	3	4	210	1	0	0	0	0	1	0	0	0	9918	842	30	2	535	2	MRPS5	2	95767455	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	16513557	95767455	147431918	12	12879										
IL1RL1	0	genome.wustl.edu	37	chr2	102964505	102964505	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aaaatgttctggattgaggcCactctgctctggagagacat	11	8	3	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	102964505	102964505	C	A	SNP	IL1RL1	ENST00000233954	human	ensembl	69_37n	1	known	silent	c.1071	p.A357	0.001	prints_IL1_rcpt_1	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RL1	HGNC	ENSG00000115602	528	0	0	150	39	20.63	-	-	-	A	102964505	C	A	102964505	2	1	210	1	0	0	0	0	0	0	0	1	7717	581	21	4		4	IL1RL1	2	102964505	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09	7197050	102964505	140234868	13	12880										
TTN	0	genome.wustl.edu	37	chr2	179425922	179425922	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ttcagtaagttcagttacttCaaagtatgtttcttgtatat	6	5	4	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	179425922	179425922	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.77233	p.E25745K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	201	0	0	70	8	10.26	-	-	-	T	179425922	C	T	179425922	3	4	210	1	0	0	0	0	1	0	0	0	16832	835	29	2	23190	2	TTN	2	179425922	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	76461417	179425922	63773451	14	12881										
TTN	0	genome.wustl.edu	37	chr2	179599535	179599535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cttttacatccgtaatatcaAgtatagcctcagaattgaca	5	9	2	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	179599535	179599535	A	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.11384	p.L3795H	0.969	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	170	0	0	67	18	21.18	-	-	-	T	179599535	A	T	179599535	3	4	210	1	0	0	0	0	1	0	0	0	16832	72	3	5	89661	5	TTN	2	179599535	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	173613	179599535	63599838	15	12882										
DNAJC10	0	genome.wustl.edu	37	chr2	183597233	183597233	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tttttgtccccagattgtttGacttcacagacacgactcag	7	11	2	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	183597233	183597233	G	A	SNP	DNAJC10	ENST00000264065	human	ensembl	69_37n	1	known	silent	c.813	p.L271	1.000	superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C	pfam_Thioredoxin_domain,pfam_DnaJ_N,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_N,smart_DnaJ_N,pirsf_DnaJ_homolog_subfam-C,prints_Hsp_DnaJ,prints_Thioredoxin,pfscan_DnaJ_N	-	no_errors	DNAJC10	HGNC	ENSG00000077232	313	0	0	103	28	21.37	-	-	-	A	183597233	G	A	183597233	2	1	210	1	0	0	0	0	0	0	0	1	4664	1281	45	2		2	DNAJC10	2	183597233	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	3997698	183597233	59602140	16	12883										
HECW2	0	genome.wustl.edu	37	chr2	197136015	197136015	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	acaatcttgtcattgtaagcTgaaaaaaaaatcagaaaaga	6	5	3	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	2	197136015	197136015	T	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	splice_site	c.3239-2	e16-2	1.000	-	-	-	no_errors	HECW2	HGNC	ENSG00000138411	158	1	0.63	58	37	38.54	-	-	-	A	197136015	T	A	197136015	5	1	210	1	0	0	0	0	0	0	1	0	7094	1594	55	5	1533	5	HECW2	2	197136015	Splice_Site	SNP	T	TCGA-A8-A097-01A-11W-A050-09	13538782	197136015	46063358	17	12884										
LRRN1	0	genome.wustl.edu	37	chr3	3887664	3887664	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gcacgacggttttcctagacTgtcgagccatggctgagcca	12	12	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	3887664	3887664	T	C	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	missense	c.1339	p.C447R	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	83	0	0	60	19	23.75	-	-	-	C	3887664	T	C	3887664	3	2	210	1	0	0	0	0	1	0	0	0	9100	1580	55	5	1341	5	LRRN1	3	3887664	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09		3887664	194134766	18	12885										
METTL6	0	genome.wustl.edu	37	chr3	15455331	15455331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gagtcactgacaccagagaaGgcttgtgagctcttcaaggg	13	9	3	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	15455331	15455331	G	T	SNP	METTL6	ENST00000453819	human	ensembl	69_37n	-1	putative	missense	c.460	p.L154I	0.000	NULL	pfam_Methyltransf_12	-	no_start_codon	METTL6	HGNC	ENSG00000206562	22	0	0	13	5	27.78	-	-	-	T	15455331	G	T	15455331	3	4	210	1	0	0	0	0	1	0	0	0	9575	1015	35	4		4	METTL6	3	15455331	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	11567667	15455331	182567099	19	12886										
DLEC1	0	genome.wustl.edu	37	chr3	38127748	38127749	+	Frame_Shift_Ins	INS	-	-	TGTG													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cagtgtcaccggtgttggacINStgtggttactgcctcattgg							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	38127748	38127749	-	TGTG	INS	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	frame_shift_ins	c.1452_1453	p.G485fs	1.000:1.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	235	0	0	39	8	17.02	-	-	-	TGTG	38127749	-	TGTG	38127748	7	5	210	1	0	1	1	0	0	0	0	0	4588	564	20	0	1486	0	DLEC1	3	38127748	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	22672417	38127748	159894682	20	12887										
NBEAL2	0	genome.wustl.edu	37	chr3	47045357	47045357	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gagaagctggtgctgtcggcCgagtgccagctggtgacggt	18	9	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	47045357	47045357	C	T	SNP	NBEAL2	ENST00000443829	human	ensembl	69_37n	1	novel	nonsense	c.877	p.R293*	0.860	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBEAL2	HGNC	ENSG00000160796	185	0	0	34	16	32	-	-	-	T	47045357	C	T	47045357	4	4	210	1	0	0	0	0	0	1	0	0	10261	639	23	1	5914	1	NBEAL2	3	47045357	Nonsense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	8917609	47045357	150977073	21	12888										
GPR27	0	genome.wustl.edu	37	chr3	71804099	71804099	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cctgctcctctgggggccctAcgtcgtggccagctacctgc	12	17	1	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	71804099	71804099	A	G	SNP	GPR27	ENST00000304411	human	ensembl	69_37n	1	known	missense	c.899	p.Y300C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR27	HGNC	ENSG00000170837	20	0	0	6	18	75	-	-	-	G	71804099	A	G	71804099	3	3	210	1	0	0	0	0	1	0	0	0	6735	391	14	5	901	5	GPR27	3	71804099	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	24758742	71804099	126218331	22	12889										
PCYT1A	0	genome.wustl.edu	37	chr3	195968873	195968873	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tagcccctctgcaggttccgCctcgcatacacatcataatc	6	16	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	3	195968873	195968873	C	A	SNP	PCYT1A	ENST00000292823	human	ensembl	69_37n	-1	known	missense	c.654	p.R218S	0.997	NULL	pfam_Cytidylyltransf,superfamily_NA-bd_OB-fold-like,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1A	HGNC	ENSG00000161217	149	1	0.67	105	17	13.93	-	-	-	A	195968873	C	A	195968873	3	1	210	1	0	0	0	0	1	0	0	0	11683	738	26	4	461	4	PCYT1A	3	195968873	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	124164774	195968873	2053557	23	12890										
GPR125	0	genome.wustl.edu	37	chr4	22438206	22438206	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tccgggatatatcccactgcCatgggtgttccgcgtacact	10	13	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	22438206	22438206	C	G	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.1144	p.G382R	0.797	pfam_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	235	1	0.42	92	32	25.81	-	-	-	G	22438206	C	G	22438206	3	3	210	1	0	0	0	0	1	0	0	0	6689	594	21	4	2865	4	GPR125	4	22438206	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		22438206	168716070	24	12891										
KDR	0	genome.wustl.edu	37	chr4	55980407	55980407	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcaattccatgagacggactCagaaccacatcataaatcct	5	12	3	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	55980407	55980407	C	G	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	silent	c.684	p.L228	1.000	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	193	0	0	111	76	40.64	-	-	-	G	55980407	C	G	55980407	2	3	210	1	0	0	0	0	0	0	0	1	8192	813	29	2		2	KDR	4	55980407	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09	33542201	55980407	135173869	25	12892										
SLC4A4	0	genome.wustl.edu	37	chr4	72432765	72432765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aacgccacacatcatgctgaTaaaattcctttccttcagtc	4	13	2	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	72432765	72432765	T	A	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.3144	p.D1048E	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	378	0	0	229	47	17.03	-	-	-	A	72432765	T	A	72432765	3	1	210	1	0	0	0	0	1	0	0	0	14745	1403	49	5	3456	5	SLC4A4	4	72432765	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09	16452358	72432765	118721511	26	12893										
AFM	0	genome.wustl.edu	37	chr4	74363407	74363407	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	acaactgagaaaagcctcaaGatggtacaacaagaatgtaa	8	7	1	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	74363407	74363407	G	T	SNP	AFM	ENST00000226355	human	ensembl	69_37n	1	known	missense	c.1230	p.K410N	0.002	pirsf_Serum_albumin_subgr,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin_subgr,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_Serum_albumin,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557	227	0	0	158	20	11.24	-	-	-	T	74363407	G	T	74363407	3	4	210	1	0	0	0	0	1	0	0	0	361	933	33	2	1268	2	AFM	4	74363407	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	1930642	74363407	116790869	27	12894										
C4orf17	0	genome.wustl.edu	37	chr4	100461586	100461586	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tagagtgtcaagtcaaggatCtgaagaaaacaaggaagtac	11	5	3	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	100461586	100461586	C	G	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	missense	c.854	p.S285C	0.992	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	409	0	0	172	78	31.2	-	-	-	G	100461586	C	G	100461586	3	3	210	1	0	0	0	0	1	0	0	0	2273	913	32	2	880	2	C4orf17	4	100461586	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	26098179	100461586	90692690	28	12895										
INTU	0	genome.wustl.edu	37	chr4	128565122	128565122	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gaccaagtggagctggagaaGaaccggaaagcagggtgatg	17	6	0	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	4	128565122	128565122	G	A	SNP	INTU	ENST00000335251	human	ensembl	69_37n	1	known	missense	c.593	p.R198K	0.931	smart_PDZ,pfscan_PDZ	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	204	0	0	63	47	42.73	-	-	-	A	128565122	G	A	128565122	3	1	210	1	0	0	0	0	1	0	0	0	7840	942	33	2	599	2	INTU	4	128565122	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	28103536	128565122	62589154	29	12896										
CDH10	0	genome.wustl.edu	37	chr5	24511481	24511481	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tgtgtgtccttctcagtcacGatgtcaaacatatcagtacc	7	11	4	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	5	24511481	24511481	G	A	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	silent	c.957	p.I319	0.007	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	236	0	0	64	40	38.46	-	-	-	A	24511481	G	A	24511481	2	1	210	1	0	0	0	0	0	0	0	1	3125	1048	37	1		1	CDH10	5	24511481	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09		24511481	156403779	30	12897										
IRF1	0	genome.wustl.edu	37	chr5	131823647	131823647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tggcccagctccggaacaaaCaggcatccttgttgatgtcc	10	13	0	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	5	131823647	131823647	C	T	SNP	IRF1	ENST00000245414	human	ensembl	69_37n	-1	known	missense	c.158	p.C53Y	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347	55	0	0	10	7	41.18	-	-	-	T	131823647	C	T	131823647	3	4	210	1	0	0	0	0	1	0	0	0	7881	478	17	4	851	4	IRF1	5	131823647	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	107312166	131823647	49091613	31	12898										
PCDHB16	0	genome.wustl.edu	37	chr5	140563393	140563393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aagagctgaatataatatcaCcctcaccgtcacagatatgg	7	10	3	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	5	140563393	140563393	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.1259	p.T420I	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	121	0	0	48	17	26.15	-	-	-	T	140563393	C	T	140563393	3	4	210	1	0	0	0	0	1	0	0	0	11614	507	18	4	1261	4	PCDHB16	5	140563393	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	8739746	140563393	40351867	32	12899										
TCERG1	0	genome.wustl.edu	37	chr5	145859431	145859431	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ttgccagggcacccaactccGacaatgctgtcgatccaaaa	8	14	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	5	145859431	145859431	G	A	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	silent	c.1776	p.P592	0.948	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	91	0	0	41	26	38.24	-	-	-	A	145859431	G	A	145859431	2	1	210	1	0	0	0	0	0	0	0	1	15780	1045	37	1		1	TCERG1	5	145859431	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	5296038	145859431	35055829	33	12900										
GPR151	0	genome.wustl.edu	37	chr5	145895382	145895382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	atcccaaacacttttggagtAcgccgtagctcggataggtg	11	10	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	5	145895382	145895382	A	G	SNP	GPR151	ENST00000311104	human	ensembl	69_37n	-1	known	missense	c.295	p.Y99H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR151	HGNC	ENSG00000173250	286	0	0	91	48	34.53	-	-	-	G	145895382	A	G	145895382	3	3	210	1	0	0	0	0	1	0	0	0	6707	391	14	5	968	5	GPR151	5	145895382	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	35951	145895382	35019878	34	12901										
ZSCAN16	0	genome.wustl.edu	37	chr6	28093507	28093507	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcctgagcattcttcctaaaGacctgcaagcatgggtgcgt	10	11	1	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	6	28093507	28093507	G	C	SNP	ZSCAN16	ENST00000340487	human	ensembl	69_37n	1	known	missense	c.286	p.D96H	0.854	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812	118	0	0	81	29	26.36	-	-	-	C	28093507	G	C	28093507	3	2	210	1	0	0	0	0	1	0	0	0	18321	942	33	2	288	2	ZSCAN16	6	28093507	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		28093507	143021560	35	12902										
NFKBIE	0	genome.wustl.edu	37	chr6	44226961	44226961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agaccctgcctggcttcagtCggtacacagcagcagtttcc	10	14	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	6	44226961	44226961	C	G	SNP	NFKBIE	ENST00000275015	human	ensembl	69_37n	-1	known	missense	c.1498	p.D500H	0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIE	HGNC	ENSG00000146232	373	0	0	115	16	12.21	-	-	-	G	44226961	C	G	44226961	3	3	210	1	0	0	0	0	1	0	0	0	10452	884	31	3	8	3	NFKBIE	6	44226961	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	16133454	44226961	126888106	36	12903										
TNFRSF21	0	genome.wustl.edu	37	chr6	47202544	47202544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aggctccaccgtcaggagagCggaattctcaagtttcgcgt	12	11	2	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	6	47202544	47202544	C	T	SNP	TNFRSF21	ENST00000296861	human	ensembl	69_37n	-1	known	missense	c.1600	p.A534T	0.647	NULL	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_21,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	79	0	0	47	23	32.86	-	-	-	T	47202544	C	T	47202544	3	4	210	1	0	0	0	0	1	0	0	0	16390	768	27	1	375	1	TNFRSF21	6	47202544	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	2975583	47202544	123912523	37	12904										
SAMD3	0	genome.wustl.edu	37	chr6	130466530	130466530	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ctgggatcatccccaaaaacAtctgggaggagtaaacatgt	10	9	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	6	130466530	130466530	A	T	SNP	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	missense	c.1233	p.D411E	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	232	0	0	94	95	50.26	-	-	-	T	130466530	A	T	130466530	3	4	210	1	0	0	0	0	1	0	0	0	13906	214	8	5	337	5	SAMD3	6	130466530	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	83263986	130466530	40648537	38	12905										
GRM3	0	genome.wustl.edu	37	chr7	86468645	86468645	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	atcaagcacaacaacacaccCttggtcaaagcatcgggccg	8	14	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	86468645	86468645	C	T	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	silent	c.1815	p.P605	0.356	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	250	0	0	161	42	20.69	-	-	-	T	86468645	C	T	86468645	2	4	210	1	0	0	0	0	0	0	0	1	6849	668	24	4		4	GRM3	7	86468645	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09		86468645	72670018	39	12906										
LMTK2	0	genome.wustl.edu	37	chr7	97822843	97822844	+	Frame_Shift_Ins	INS	-	-	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	acactccccagaaactagtgINSccccccgataagccggcaga							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	97822843	97822844	-	C	INS	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	frame_shift_ins	c.3066_3067	p.D1024fs	0.439:0.991	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	111	0	0	36	4	10	-	-	-	C	97822844	-	C	97822843	7	5	210	1	0	1	1	0	0	0	0	0	8915	1306	46	0	3108	0	LMTK2	7	97822843	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	11354198	97822843	61315820	40	12907										
ARPC1A	0	genome.wustl.edu	37	chr7	98942068	98942068	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ttgtgaagtggtcccccctaGagaacaaatttgctgtggga	12	8	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	98942068	98942068	G	C	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	missense	c.322	p.E108Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	231	0	0	85	26	23.42	-	-	-	C	98942068	G	C	98942068	3	2	210	1	0	0	0	0	1	0	0	0	973	943	33	2	332	2	ARPC1A	7	98942068	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	1119225	98942068	60196595	41	12908										
CUX1	0	genome.wustl.edu	37	chr7	101844882	101844882	+	Frame_Shift_Del	DEL	G	G	-													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tctccctgaagaagccctccGcagctcctgaggccggtgcc							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	101844882	101844882	G	-	DEL	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	frame_shift_del	c.2338	p.A780fs	0.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	106	0	0	18	2	10	-	-	-	-	101844882	G	-	101844882	7	5	210	1	0	1	0	1	0	0	0	0	4095	1087	38	0	2442	0	CUX1	7	101844882	Frame_Shift_Del	DEL	G	TCGA-A8-A097-01A-11W-A050-09	2902814	101844882	57293781	42	12909										
NRCAM	0	genome.wustl.edu	37	chr7	107824982	107824982	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agcttcagctgggctgtggtCtgtgttccagaaacttcagt	12	9	3	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	107824982	107824982	C	A	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.2112	p.Q704H	0.989	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	153	0	0	55	31	36.05	-	-	-	A	107824982	C	A	107824982	3	1	210	1	0	0	0	0	1	0	0	0	10717	912	32	2	1884	2	NRCAM	7	107824982	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	5980100	107824982	51313681	43	12910										
WDR60	0	genome.wustl.edu	37	chr7	158723189	158723189	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aagctggtacatagtgctctGatccagttgggtgacaggta	13	7	1	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	7	158723189	158723189	G	C	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	silent	c.2529	p.L843	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	782	1	0.13	138	88	38.77	-	-	-	C	158723189	G	C	158723189	2	2	210	1	0	0	0	0	0	0	0	1	17408	1277	45	2		2	WDR60	7	158723189	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	50898207	158723189	415474	44	12911										
MCPH1	0	genome.wustl.edu	37	chr8	6335116	6335116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcttgtttgaaatctctagcCaacaagaacattagtcatga	6	8	3	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	8	6335116	6335116	C	A	SNP	MCPH1	ENST00000344683	human	ensembl	69_37n	1	known	missense	c.1937	p.P646Q	1.000	smart_BRCT_dom	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	MCPH1	HGNC	ENSG00000147316	420	0	0	64	41	38.68	-	-	-	A	6335116	C	A	6335116	3	1	210	1	0	0	0	0	1	0	0	0	9469	608	21	4	1983	4	MCPH1	8	6335116	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		6335116	140028906	45	12912										
CHD7	0	genome.wustl.edu	37	chr8	61778453	61778454	+	Frame_Shift_Ins	INS	-	-	G													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aagagctagactcacttgatINSgggggggatgaaatagaaaa							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	8	61778453	61778454	-	G	INS	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	frame_shift_ins	c.8955_8956	p.D2987fs	0.760:1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	41	0	0	27	4	12.9	-	-	-	G	61778454	-	G	61778453	7	5	210	1	0	1	1	0	0	0	0	0	3359	1461	51	0	9101	0	CHD7	8	61778453	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	55443337	61778453	84585569	46	12913										
PUF60	0	genome.wustl.edu	37	chr8	144898861	144898861	+	Frame_Shift_Del	DEL	T	T	-													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tctgcatcctcctcctcgccTtgtttctcttggtagatgat							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	8	144898861	144898861	T	-	DEL	PUF60	ENST00000526683	human	ensembl	69_37n	-1	known	frame_shift_del	c.1509	p.G504fs	1.000	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950	351	0	0	16	2	11.11	-	-	-	-	144898861	T	-	144898861	7	5	210	1	0	1	0	1	0	0	0	0	12907	1606	56	0	174	0	PUF60	8	144898861	Frame_Shift_Del	DEL	T	TCGA-A8-A097-01A-11W-A050-09	83120408	144898861	1465161	47	12914										
ZNF782	0	genome.wustl.edu	37	chr9	99580237	99580237	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gtgggctttctgatgttctcTaaggcttgatttttgactga	11	6	2	4			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	9	99580237	99580237	T	G	SNP	ZNF782	ENST00000289032	human	ensembl	69_37n	-1	putative	nonstop	c.2033	p.*678S	0.116	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF782	HGNC	ENSG00000196597	258	0	0	151	26	14.69	-	-	-	G	99580237	T	G	99580237	4	3	210	1	0	0	0	0	0	0	0	0	18248	1530	53	5	35	5	ZNF782	9	99580237	Nonstop_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09		99580237	41633194	48	12915										
TLR4	0	genome.wustl.edu	37	chr9	120475977	120475977	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ctcactctccagtcttcaggTactaaatatgagccacaaca	5	13	4	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	9	120475977	120475977	T	A	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.1571	p.V524E	0.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	265	0	0	46	33	41.77	-	-	-	A	120475977	T	A	120475977	3	1	210	1	0	0	0	0	1	0	0	0	16048	1638	57	5	1581	5	TLR4	9	120475977	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09	20895740	120475977	20737454	49	12916										
DBC1	0	genome.wustl.edu	37	chr9	122075479	122075479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ccacaaaggataggtagctcCtggagtggtggaaaggcccc	14	10	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	9	122075479	122075479	C	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.155	p.R52M	1.000	pfam_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	179	0	0	131	33	20.12	-	-	-	A	122075479	C	A	122075479	3	1	210	1	0	0	0	0	1	0	0	0	4279	681	24	4	2158	4	DBC1	9	122075479	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	1599502	122075479	19137952	50	12917										
COL5A1	0	genome.wustl.edu	37	chr9	137707450	137707451	+	Frame_Shift_Ins	INS	-	-	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ggttttcctggagatcctggINScccccccggagagcctggcc							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	9	137707450	137707451	-	C	INS	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	frame_shift_ins	c.4043_4044	p.G1351fs	1.000:0.527	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	168	0	0	19	5	20.83	-	-	-	C	137707451	-	C	137707450	7	5	210	1	0	1	1	0	0	0	0	0	3726	1203	42	0	4245	0	COL5A1	9	137707450	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	15631971	137707450	3505981	51	12918										
PITRM1	0	genome.wustl.edu	37	chr10	3189822	3189822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cgggcgtgagggtccggcctGccctgatggatgcgtacagg	18	11	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	10	3189822	3189822	G	A	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.2180	p.A727V	1.000	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	71	0	0	30	56	65.12	-	-	-	A	3189822	G	A	3189822	3	1	210	1	0	0	0	0	1	0	0	0	12027	1319	46	4	972	4	PITRM1	10	3189822	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		3189822	132344925	52	12919										
AKR1E2	0	genome.wustl.edu	37	chr10	4884037	4884037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	attgcaaaggagcacggcaaGtctcctgctcaggtagggag	14	9	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	10	4884037	4884037	G	A	SNP	AKR1E2	ENST00000298375	human	ensembl	69_37n	1	known	silent	c.741	p.K247	0.991	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1E2	HGNC	ENSG00000165568	114	0	0	42	11	20.75	-	-	-	A	4884037	G	A	4884037	2	1	210	1	0	0	0	0	0	0	0	1	474	1020	36	4		4	AKR1E2	10	4884037	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	1694215	4884037	130650710	53	12920										
FAM190B	0	genome.wustl.edu	37	chr10	86259685	86259685	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agggctccttccaggggatcCcacggactgttccaccgcac	11	16	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	10	86259685	86259685	C	A	SNP	FAM190B	ENST00000224756	human	ensembl	69_37n	1	known	missense	c.2380	p.P794T	1.000	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	244	0	0	106	28	20.9	-	-	-	A	86259685	C	A	86259685	3	1	210	1	0	0	0	0	1	0	0	0	5564	623	22	4	2414	4	FAM190B	10	86259685	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	81375648	86259685	49275062	54	12921										
MICAL2	0	genome.wustl.edu	37	chr11	12265628	12265628	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agctgcttcttcctctccatCaactgttgactctgcttctc	5	15	5	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	12265628	12265628	C	G	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	nonsense	c.2753	p.S918*	0.120	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	950	0	0	145	48	24.87	-	-	-	G	12265628	C	G	12265628	4	3	210	1	0	0	0	0	0	1	0	0	9641	838	29	2	2827	2	MICAL2	11	12265628	Nonsense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		12265628	122740888	55	12922										
LDHC	0	genome.wustl.edu	37	chr11	18451315	18451316	+	Frame_Shift_Ins	INS	-	-	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ctgcaaactccagaatagttINSattgtcacagcaggtgcaag							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	18451315	18451316	-	C	INS	LDHC	ENST00000280704	human	ensembl	69_37n	1	known	frame_shift_ins	c.276_277	p.I92fs	1.000:1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHC	HGNC	ENSG00000166796	120	0	0	92	26	22.03	-	-	-	C	18451316	-	C	18451315	7	5	210	1	0	1	1	0	0	0	0	0	8756	1741	61	0	286	0	LDHC	11	18451315	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	6185687	18451315	116555201	56	12923										
PRMT3	0	genome.wustl.edu	37	chr11	20529900	20529900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	acaagagtaagaaagatccaCgttctctcaccgtgaccctc	7	13	2	4			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	20529900	20529900	C	T	SNP	PRMT3	ENST00000331079	human	ensembl	69_37n	1	known	missense	c.1537	p.R513C	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238	177	0	0	51	51	50	-	-	-	T	20529900	C	T	20529900	3	4	210	1	0	0	0	0	1	0	0	0	12619	536	19	1	1599	1	PRMT3	11	20529900	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	2078585	20529900	114476616	57	12924										
ZFPL1	0	genome.wustl.edu	37	chr11	64854242	64854242	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cccctcaacacgtctgacttCtctgactggtctagttttaa	6	13	4	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	64854242	64854242	C	T	SNP	ZFPL1	ENST00000530488	human	ensembl	69_37n	1	novel	missense	c.139	p.L47F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFPL1	HGNC	ENSG00000162300	336	0	0	71	16	18.39	-	-	-	T	64854242	C	T	64854242	3	4	210	1	0	0	0	0	1	0	0	0	17752	912	32	2	473	2	ZFPL1	11	64854242	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	44324342	64854242	70152274	58	12925										
ZFPL1	0	genome.wustl.edu	37	chr11	64854532	64854532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gatccacatgggcaatcctgAgcccttgactcacggtgagc	11	13	1	3			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	64854532	64854532	A	G	SNP	ZFPL1	ENST00000294258	human	ensembl	69_37n	1	known	missense	c.614	p.E205G	0.991	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300	48	0	0	20	4	16.67	-	-	-	G	64854532	A	G	64854532	3	3	210	1	0	0	0	0	1	0	0	0	17752	304	11	5	632	5	ZFPL1	11	64854532	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	290	64854532	70151984	59	12926										
TRIM49	0	genome.wustl.edu	37	chr11	89531356	89531356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gtgagaaagagcaattagggAtggtgtatattagggagctt	15	2	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	89531356	89531356	A	G	SNP	TRIM49	ENST00000329758	human	ensembl	69_37n	-1	known	missense	c.1301	p.I434T	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49	HGNC	ENSG00000168930	92	0	0	67	17	20.24	-	-	-	G	89531356	A	G	89531356	3	3	210	1	0	0	0	0	1	0	0	0	16620	333	12	5	61	5	TRIM49	11	89531356	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	24676824	89531356	45475160	60	12927										
MMP3	0	genome.wustl.edu	37	chr11	102712906	102712906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tgttgtatcctttgtccattGttcatcatcatcaaagtggg	8	8	4	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	102712906	102712906	G	T	SNP	MMP3	ENST00000299855	human	ensembl	69_37n	-1	known	missense	c.604	p.Q202K	0.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP3	HGNC	ENSG00000149968	397	1	0.25	117	40	25.32	-	-	-	T	102712906	G	T	102712906	3	4	210	1	0	0	0	0	1	0	0	0	9738	1386	48	4	857	4	MMP3	11	102712906	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	13181550	102712906	32293610	61	12928										
DPAGT1	0	genome.wustl.edu	37	chr11	118967894	118967894	+	Frame_Shift_Del	DEL	G	G	-													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gtgaggtttctctcatgtatGggcccaaggactttaagtag							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	118967894	118967894	G	-	DEL	DPAGT1	ENST00000354202	human	ensembl	69_37n	-1	known	frame_shift_del	c.1119	p.I374fs	0.987	NULL	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269	428	0	0	85	30	25.86	-	-	-	-	118967894	G	-	118967894	7	5	210	1	0	1	0	1	0	0	0	0	4745	1335	47	0	115	0	DPAGT1	11	118967894	Frame_Shift_Del	DEL	G	TCGA-A8-A097-01A-11W-A050-09	16254988	118967894	16038622	62	12929										
TRIM29	0	genome.wustl.edu	37	chr11	119996559	119996560	+	Frame_Shift_Ins	INS	-	-	G													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	catgataggtgggcaggggtINSggggggagagagtaattgct							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	11	119996559	119996560	-	G	INS	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1173_1172	p.P392fs	0.635:0.990	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	108	0	0	16	2	11.11	-	-	-	G	119996560	-	G	119996559	7	5	210	1	0	1	1	0	0	0	0	0	16599	1683	59	0	617	0	TRIM29	11	119996559	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	1028665	119996559	15009957	63	12930										
MRPL51	0	genome.wustl.edu	37	chr12	6601615	6601615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gccccctgatcagttctttgGggtgcttttcaaagtttcct	9	11	3	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	12	6601615	6601615	G	A	SNP	MRPL51	ENST00000229238	human	ensembl	69_37n	-1	known	missense	c.209	p.P70L	1.000	pfam_Ribosomal_L51_mit	pfam_Ribosomal_L51_mit	-	no_errors	MRPL51	HGNC	ENSG00000111639	404	0	0	90	21	18.92	-	-	-	A	6601615	G	A	6601615	3	1	210	1	0	0	0	0	1	0	0	0	9887	1232	43	4	181	4	MRPL51	12	6601615	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		6601615	127250280	64	12931										
PTPRB	0	genome.wustl.edu	37	chr12	70954712	70954712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gagatgactcacagaggctgGgacttaaacagaagaaaaat	11	6	1	5			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	12	70954712	70954712	G	T	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.4171	p.P1391T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	126	1	0.79	101	78	43.58	-	-	-	T	70954712	G	T	70954712	3	4	210	1	0	0	0	0	1	0	0	0	12879	1232	43	4	2548	4	PTPRB	12	70954712	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	64353097	70954712	62897183	65	12932										
TPH2	0	genome.wustl.edu	37	chr12	72388264	72388264	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	catgttccactacttgcggaTcctaagtttgctcagttttc	7	11	1	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	12	72388264	72388264	T	C	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	silent	c.987	p.D329	0.995	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	356	0	0	130	22	14.47	-	-	-	C	72388264	T	C	72388264	2	2	210	1	0	0	0	0	0	0	0	1	16498	1432	50	5		5	TPH2	12	72388264	Silent	SNP	T	TCGA-A8-A097-01A-11W-A050-09	1433552	72388264	61463631	66	12933										
OAS3	0	genome.wustl.edu	37	chr12	113388650	113388650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cagctagaatcctggtggcaGgaccaggtgcccagcctgag	14	12	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	12	113388650	113388650	G	T	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	missense	c.1527	p.Q509H	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	81	0	0	59	17	22.37	-	-	-	T	113388650	G	T	113388650	3	4	210	1	0	0	0	0	1	0	0	0	10874	991	35	4	1553	4	OAS3	12	113388650	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	41000386	113388650	20463245	67	12934										
NEK5	0	genome.wustl.edu	37	chr13	52701610	52701610	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	atggccttaatcacatcgtaCttatccatggtctccaatgg	7	11	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	13	52701610	52701610	C	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.9	p.K3N	0.986	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	295	0	0	169	30	15.08	-	-	-	A	52701610	C	A	52701610	3	1	210	1	0	0	0	0	1	0	0	0	10399	564	20	4	2197	4	NEK5	13	52701610	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		52701610	62468268	68	12935										
SERPINA1	0	genome.wustl.edu	37	chr14	94849571	94849571	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gccccacgagacagaagacgGcattgtcctgcaagacagag	12	12	0	5			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	14	94849571	94849571	G	C	SNP	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	missense	c.4	p.P2A	0.756	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249	114	0	0	13	10	43.48	-	-	-	C	94849571	G	C	94849571	3	2	210	1	0	0	0	0	1	0	0	0	14174	1203	42	4	1268	4	SERPINA1	14	94849571	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		94849571	12499969	69	12936										
PAPOLA	0	genome.wustl.edu	37	chr14	96997870	96997870	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tcctgaagatttggatctacGagatgacagtctgctaaaaa	9	7	2	4			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	14	96997870	96997870	G	T	SNP	PAPOLA	ENST00000553461	human	ensembl	69_37n	1	putative	nonsense	c.211	p.E71*	1.000	pfam_PolA_pol_cen_dom	pfam_PolA_pol_cen_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PAPOLA	HGNC	ENSG00000090060	662	0	0	100	30	23.08	-	-	-	T	96997870	G	T	96997870	4	4	210	1	0	0	0	0	0	1	0	0	11502	1058	37	3	580	3	PAPOLA	14	96997870	Nonsense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	2148299	96997870	10351670	70	12937										
ZSCAN29	0	genome.wustl.edu	37	chr15	43658336	43658336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cttctgaacacaacaggtgcAgctgagttggggtcctgggg	15	9	1	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	15	43658336	43658336	A	G	SNP	ZSCAN29	ENST00000396976	human	ensembl	69_37n	-1	known	silent	c.1194	p.A398	0.755	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265	86	0	0	65	11	14.47	-	-	-	G	43658336	A	G	43658336	2	3	210	1	0	0	0	0	0	0	0	1	18327	175	7	5		5	ZSCAN29	15	43658336	Silent	SNP	A	TCGA-A8-A097-01A-11W-A050-09		43658336	58873056	71	12938										
DMXL2	0	genome.wustl.edu	37	chr15	51783884	51783884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tctgaattgctggaatcataTtaatcagttcttcttcagcc	6	9	6	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	15	51783884	51783884	T	C	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.4844	p.N1615S	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	233	0	0	101	17	14.41	-	-	-	C	51783884	T	C	51783884	3	2	210	1	0	0	0	0	1	0	0	0	4631	1493	52	5	4365	5	DMXL2	15	51783884	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09	8125548	51783884	50747508	72	12939										
CREBBP	0	genome.wustl.edu	37	chr16	3779642	3779642	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ttgcagcccttggtgtgctgCaccacccgcttcatcttctg	9	15	3	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	16	3779642	3779642	C	G	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	silent	c.5406	p.V1802	0.991	pfam_Znf_TAZ,superfamily_Znf_TAZ,smart_Znf_TAZ,pfscan_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	91	0	0	19	14	42.42	-	-	-	G	3779642	C	G	3779642	2	3	210	1	0	0	0	0	0	0	0	1	3891	697	25	4		4	CREBBP	16	3779642	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09		3779642	86575111	73	12940										
DNAH3	0	genome.wustl.edu	37	chr16	21011634	21011634	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gacatgatgatatcctgggtCtgattggctgaggttctggc	14	7	2	4			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	16	21011634	21011634	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.6333	p.Q2111	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	534	0	0	185	26	12.32	-	-	-	T	21011634	C	T	21011634	2	4	210	1	0	0	0	0	0	0	0	1	4639	912	32	2		2	DNAH3	16	21011634	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09	17231992	21011634	69343119	74	12941										
NLRP1	0	genome.wustl.edu	37	chr17	5436639	5436639	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cttgcctgcaatctcagcaaTtgggaagatcttgctcacgt	9	11	3	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	17	5436639	5436639	T	C	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.3118	p.I1040V	0.001	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	112	0	0	42	56	57.14	-	-	-	C	5436639	T	C	5436639	3	2	210	1	0	0	0	0	1	0	0	0	10543	1493	52	5	1410	5	NLRP1	17	5436639	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09		5436639	75758571	75	12942										
TP53	0	genome.wustl.edu	37	chr17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agtgtgatgatggtgaggatGggcctccggttcatgccgcc							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	17	7577531	7577531	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.750	p.I251fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	92	0	0	52	25	32.47	-	-	-	-	7577531	G	-	7577531	7	5	210	1	0	1	0	1	0	0	0	0	16477	1335	47	0	540	0	TP53	17	7577531	Frame_Shift_Del	DEL	G	TCGA-A8-A097-01A-11W-A050-09	2140892	7577531	73617679	76	12943										
GUCY2D	0	genome.wustl.edu	37	chr17	7912874	7912874	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ggggatcagcacatagctatCcgcccagcaaccaagacggc	11	14	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	17	7912874	7912874	C	T	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	silent	c.1719	p.I573	0.999	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	136	0	0	28	18	39.13	-	-	-	T	7912874	C	T	7912874	2	4	210	1	0	0	0	0	0	0	0	1	6948	845	30	2		2	GUCY2D	17	7912874	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09	335343	7912874	73282336	77	12944										
PPM1E	0	genome.wustl.edu	37	chr17	56833490	56833490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gaacccgaacccgaacccgaGtccgagcccgagcccgaacc	10	19	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	17	56833490	56833490	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	silent	c.132	p.E44	0.898	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	21	0	0	38	12	24	-	-	-	A	56833490	G	A	56833490	2	1	210	1	0	0	0	0	0	0	0	1	12415	1020	36	4		4	PPM1E	17	56833490	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	48920616	56833490	24361720	78	12945										
KLHL14	0	genome.wustl.edu	37	chr18	30267172	30267172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	taaatcgaggatcatatcggCtgacaaaatttgtactgtgt	9	6	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	18	30267172	30267172	C	G	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	missense	c.1184	p.S395T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	264	0	0	131	66	33.5	-	-	-	G	30267172	C	G	30267172	3	3	210	1	0	0	0	0	1	0	0	0	8423	797	28	4	722	4	KLHL14	18	30267172	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09		30267172	47810076	79	12946										
SYT4	0	genome.wustl.edu	37	chr18	40853980	40853980	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agggaagtgctggactttaaActctcaggggaaactgactc	12	8	1	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	18	40853980	40853980	A	T	SNP	SYT4	ENST00000255224	human	ensembl	69_37n	-1	known	missense	c.414	p.S138R	0.995	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	218	0	0	129	49	27.53	-	-	-	T	40853980	A	T	40853980	3	4	210	1	0	0	0	0	1	0	0	0	15568	40	2	5	875	5	SYT4	18	40853980	Missense_Mutation	SNP	A	TCGA-A8-A097-01A-11W-A050-09	10586808	40853980	37223268	80	12947										
DNMT1	0	genome.wustl.edu	37	chr19	10250460	10250460	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aagttcctgacattctccagGaggaagaaccggggccggta	13	10	1	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	19	10250460	10250460	G	T	SNP	DNMT1	ENST00000588913	human	ensembl	69_37n	-1	known	missense	c.119	p.S40Y	0.842	pfam_C5_MeTfrase,prints_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNMT1	HGNC	ENSG00000130816	76	0	0	25	5	16.67	-	-	-	T	10250460	G	T	10250460	3	4	210	1	0	0	0	0	1	0	0	0	4710	1161	41	2	1090	2	DNMT1	19	10250460	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		10250460	48878523	81	12948										
MLL4	0	genome.wustl.edu	37	chr19	36218387	36218388	+	Frame_Shift_Ins	INS	-	-	G													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ccagactcggtgctgtacacINSctgcggaccgtgtgctgggg							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	19	36218387	36218388	-	G	INS	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_ins	c.4166_4167	p.C1390fs	1.000:0.900	pirsf_MeTrfase_trithorax,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	64	0	0	9	26	74.29	-	-	-	G	36218388	-	G	36218387	7	5	210	1	0	1	1	0	0	0	0	0	9694	507	18	0	4228	0	MLL4	19	36218387	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	25967927	36218387	22910596	82	12949										
CLPTM1	0	genome.wustl.edu	37	chr19	45490564	45490564	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ctgccgctccgcgtctccttCtgcccactctcgctttggcg	9	19	3	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	19	45490564	45490564	C	G	SNP	CLPTM1	ENST00000337392	human	ensembl	69_37n	1	known	missense	c.921	p.F307L	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853	117	0	0	16	14	46.67	-	-	-	G	45490564	C	G	45490564	3	3	210	1	0	0	0	0	1	0	0	0	3584	912	32	2	951	2	CLPTM1	19	45490564	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	9272177	45490564	13638419	83	12950										
KLK2	0	genome.wustl.edu	37	chr19	51381748	51381748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	atgtgccctgcctgaaaagcCtgctgtgtacaccaaggtgg	12	11	0	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	19	51381748	51381748	C	T	SNP	KLK2	ENST00000325321	human	ensembl	69_37n	1	known	missense	c.719	p.P240L	0.960	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK2	HGNC	ENSG00000167751	249	0	0	118	27	18.49	-	-	-	T	51381748	C	T	51381748	3	4	210	1	0	0	0	0	1	0	0	0	8457	681	24	4	774	4	KLK2	19	51381748	Missense_Mutation	SNP	C	TCGA-A8-A097-01A-11W-A050-09	5891184	51381748	7747235	84	12951										
NLRP9	0	genome.wustl.edu	37	chr19	56243391	56243391	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	atgcatcctgagtcatctggAaagatattctccacacacat	6	11	3	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	19	56243391	56243391	A	G	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	silent	c.1806	p.F602	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	153	0	0	138	83	37.39	-	-	-	G	56243391	A	G	56243391	2	3	210	1	0	0	0	0	0	0	0	1	10556	243	9	5		5	NLRP9	19	56243391	Silent	SNP	A	TCGA-A8-A097-01A-11W-A050-09	4861643	56243391	2885592	85	12952										
JAG1	0	genome.wustl.edu	37	chr20	10625009	10625009	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aggatgtcacacttaccaggGatgagggctgcagtcattgg	14	8	2	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	20	10625009	10625009	G	T	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.2368	p.P790T	1.000	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	167	0	0	25	23	47.92	-	-	-	T	10625009	G	T	10625009	3	4	210	1	0	0	0	0	1	0	0	0	7988	1174	41	2	1320	2	JAG1	20	10625009	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		10625009	52400511	86	12953										
SGK2	0	genome.wustl.edu	37	chr20	42204866	42204866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ttctccctctctccccagccGcccttctacagccaagatgt	5	19	3	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	20	42204866	42204866	G	A	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	silent	c.876	p.P292	0.281	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	120	0	0	23	11	29.73	-	-	-	A	42204866	G	A	42204866	2	1	210	1	0	0	0	0	0	0	0	1	14297	1074	38	1		1	SGK2	20	42204866	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09	31579857	42204866	20820654	87	12954										
COL9A3	0	genome.wustl.edu	37	chr20	61467606	61467606	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cggcaccagcggtgttcaggGtgtccccgggccccccggtc	15	17	1	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	20	61467606	61467606	G	C	SNP	COL9A3	ENST00000343916	human	ensembl	69_37n	1	known	missense	c.1469	p.G490A	0.999	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	28	0	0	31	7	18.42	-	-	-	C	61467606	G	C	61467606	3	2	210	1	0	0	0	0	1	0	0	0	3739	1261	44	4	1579	4	COL9A3	20	61467606	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	19262740	61467606	1557914	88	12955										
KRTAP10-6	0	genome.wustl.edu	37	chr21	46011700	46011700	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	cagcaggcctgctggcagggGgaggaggtgcagcaagttgg	20	8	0	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	21	46011700	46011700	G	A	SNP	KRTAP10-6	ENST00000400368	human	ensembl	69_37n	-1	known	silent	c.666	p.S222	0.041	NULL	NULL	-	no_errors	KRTAP10-6	HGNC	ENSG00000188155	218	0	0	179	98	35.38	-	-	-	A	46011700	G	A	46011700	2	1	210	1	0	0	0	0	0	0	0	1	8566	1219	43	4		4	KRTAP10-6	21	46011700	Silent	SNP	G	TCGA-A8-A097-01A-11W-A050-09		46011700	2118195	89	12956										
AP1B1	0	genome.wustl.edu	37	chr22	29726496	29726496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gcgacagtgaagatgttgctGctctgcagcttgctgctcgc	13	11	1	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	22	29726496	29726496	G	C	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.2637	p.S879R	0.998	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	33	0	0	10	9	47.37	-	-	-	C	29726496	G	C	29726496	3	2	210	1	0	0	0	0	1	0	0	0	732	1310	46	4	224	4	AP1B1	22	29726496	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09		29726496	21578070	90	12957										
SHANK3	0	genome.wustl.edu	37	chr22	51159933	51159933	+	Frame_Shift_Del	DEL	G	G	-													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gggcaggagcccagcaggctGgggggggccgaagaggagcg							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	22	51159933	51159933	G	-	DEL	SHANK3	ENST00000262795	human	ensembl	69_37n	1	known	frame_shift_del	c.3720	p.A1243fs	0.979	NULL	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	12	0	0	4	2	33.33	-	-	-	-	51159933	G	-	51159933	7	5	210	1	0	1	0	1	0	0	0	0	14355	1335	47	0	3806	0	SHANK3	22	51159933	Frame_Shift_Del	DEL	G	TCGA-A8-A097-01A-11W-A050-09	21433437	51159933	144633	91	12958										
ZNF630	0	genome.wustl.edu	37	chrX	47920304	47920304	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	tgcgtgaagtccacagccacAtcctcaaatgtcactggttc	8	13	2	1			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	47920304	47920304	A	G	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	silent	c.36	p.D12	0.956	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	258	0	0	73	36	33.03	-	-	-	G	47920304	A	G	47920304	2	3	210	1	0	0	0	0	0	0	0	1	18150	214	8	5		5	ZNF630	23	47920304	Silent	SNP	A	TCGA-A8-A097-01A-11W-A050-09		47920304	107350256	92	12959										
TFE3	0	genome.wustl.edu	37	chrX	48887951	48887952	+	Frame_Shift_Ins	INS	-	-	C													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	ggggagcattctgggcaggtINScccccccctacatggaacgt							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	48887951	48887952	-	C	INS	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1446_1445	p.P483fs	0.035:0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	89	0	0	86	12	12.24	-	-	-	C	48887952	-	C	48887951	7	5	210	1	0	1	1	0	0	0	0	0	15895	1654	58	0	285	0	TFE3	23	48887951	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	967647	48887951	106382609	93	12960										
CACNA1F	0	genome.wustl.edu	37	chrX	49065756	49065756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	agtccttttcatcttcctccTccactccctcctgcccctct	2	21	3	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	49065756	49065756	T	G	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.4952	p.E1651A	0.733	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	494	0	0	94	19	16.81	-	-	-	G	49065756	T	G	49065756	3	3	210	1	0	0	0	0	1	0	0	0	2568	1551	54	5	1009	5	CACNA1F	23	49065756	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09	177805	49065756	106204804	94	12961										
SLC16A2	0	genome.wustl.edu	37	chrX	73641302	73641303	+	Frame_Shift_Ins	INS	-	-	G													0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aggaggaggagagggctcgaINSgggaccgtctgtcgcgggac							TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	73641302	73641303	-	G	INS	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	frame_shift_ins	c.52_53	p.D19fs	1.000:1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	33	0	0	20	3	13.04	-	-	-	G	73641303	-	G	73641302	7	5	210	1	0	1	1	0	0	0	0	0	14497	295	11	0	54	0	SLC16A2	23	73641302	Frame_Shift_Ins	INS	-	TCGA-A8-A097-01A-11W-A050-09	24575546	73641302	81629258	95	12962										
IL13RA2	0	genome.wustl.edu	37	chrX	114242507	114242507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	gctcataccttcccagcattGtttatcactccactcactcc	3	17	3	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	114242507	114242507	G	T	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.985	p.Q329K	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	990	0	0	336	141	29.56	-	-	-	T	114242507	G	T	114242507	3	4	210	1	0	0	0	0	1	0	0	0	7684	1386	48	4	169	4	IL13RA2	23	114242507	Missense_Mutation	SNP	G	TCGA-A8-A097-01A-11W-A050-09	40601205	114242507	41028053	96	12963										
CXorf56	0	genome.wustl.edu	37	chrX	118694273	118694273	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	catcttctgtgttacaaaacTtatgggcatgtttggcagca	9	8	2	0			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	118694273	118694273	T	G	SNP	CXorf56	ENST00000371594	human	ensembl	69_37n	-1	known	missense	c.200	p.K67T	1.000	NULL	NULL	-	no_errors	CXorf56	HGNC	ENSG00000018610	398	0	0	185	33	15.14	-	-	-	G	118694273	T	G	118694273	3	3	210	1	0	0	0	0	1	0	0	0	4143	1609	56	5	492	5	CXorf56	23	118694273	Missense_Mutation	SNP	T	TCGA-A8-A097-01A-11W-A050-09	4451766	118694273	36576287	97	12964										
PRRG3	0	genome.wustl.edu	37	chrX	150869481	150869481	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	12	0.0346725470924269	2.14350161117078	3.16761904761905	1.47559893522626	0.703567101897967	1	6	aagtacgaggagatagtggcCgccaaccctggcgctgacaa	13	11	0	2			TCGA-A8-A097-01A-11W-A050-09	TCGA-A8-A097-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15ca7c47-131a-4dd7-b0a7-584577b4b02c	c83a2793-64cb-4b8a-a9ab-8b086e307aeb	X	150869481	150869481	C	A	SNP	PRRG3	ENST00000370353	human	ensembl	69_37n	1	known	silent	c.672	p.A224	0.048	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	134	0	0	55	30	35.29	-	-	-	A	150869481	C	A	150869481	2	1	210	1	0	0	0	0	0	0	0	1	12687	639	23	3		3	PRRG3	23	150869481	Silent	SNP	C	TCGA-A8-A097-01A-11W-A050-09	32175208	150869481	4401079	98	12965										
LPHN2	0	genome.wustl.edu	37	chr1	82445611	82445611	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ggtgaagcattcaaacacttTgaaaccagattctagcaggt	9	8	2	3			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	1	82445611	82445611	T	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	nonsense	c.3068	p.L1023*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	182	0	0	13	41	74.55	-	-	-	A	82445611	T	A	82445611	4	1	211	1	0	0	0	0	0	1	0	0	8982	1821	63	5	3087	5	LPHN2	1	82445611	Nonsense_Mutation	SNP	T	TCGA-A8-A099-01A-11W-A019-09		82445611	166805010	1	12966										
POLR3GL	0	genome.wustl.edu	37	chr1	145457308	145457308	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ttggggagcagaattgtaatCcctggtggagggatcaaaag	15	5	1	1			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	1	145457308	145457308	C	A	SNP	POLR3GL	ENST00000369314	human	ensembl	69_37n	-1	known	silent	c.384	p.R128	1.000	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851	101	0	0	166	43	20.57	-	-	-	A	145457308	C	A	145457308	2	1	211	1	0	0	0	0	0	0	0	1	12309	869	30	2		2	POLR3GL	1	145457308	Silent	SNP	C	TCGA-A8-A099-01A-11W-A019-09	63011697	145457308	103793313	2	12967										
NBEAL1	0	genome.wustl.edu	37	chr2	204045211	204045211	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ttcctgaattcttctatttcCcagagtttttggaaaatcaa	5	8	3	2			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	2	204045211	204045211	C	G	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.6484	p.P2162A	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	71	0	0	33	22	40	-	-	-	G	204045211	C	G	204045211	3	3	211	1	0	0	0	0	1	0	0	0	10260	623	22	4	6646	4	NBEAL1	2	204045211	Missense_Mutation	SNP	C	TCGA-A8-A099-01A-11W-A019-09		204045211	39154162	3	12968										
MYNN	0	genome.wustl.edu	37	chr3	169492273	169492273	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ctgagaacaatgtctttcttGatcagagtcaggtgaaggct	11	7	4	4			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	3	169492273	169492273	G	T	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	missense	c.190	p.D64Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	108	1	0.92	56	41	41.84	-	-	-	T	169492273	G	T	169492273	3	4	211	1	0	0	0	0	1	0	0	0	10133	1290	45	2	192	2	MYNN	3	169492273	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09		169492273	28530157	4	12969										
TRIM60	0	genome.wustl.edu	37	chr4	165961589	165961589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	atgtacacagtgcagtttctCcactaaacaccagaagcact	6	12	1	1			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	4	165961589	165961589	C	A	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	1	known	missense	c.365	p.S122Y	0.032	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	68	0	0	46	43	48.31	-	-	-	A	165961589	C	A	165961589	3	1	211	1	0	0	0	0	1	0	0	0	16631	855	30	2	367	2	TRIM60	4	165961589	Missense_Mutation	SNP	C	TCGA-A8-A099-01A-11W-A019-09		165961589	25192687	5	12970										
WBSCR16	0	genome.wustl.edu	37	chr7	74482534	74482534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	gccgcaggagacctgcagcaCccgtgtctcctgaggtctgt	13	14	2	2			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	7	74482534	74482534	C	A	SNP	WBSCR16	ENST00000329959	human	ensembl	69_37n	-1	known	missense	c.526	p.V176L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	WBSCR16	HGNC	ENSG00000174374	23	0	0	39	16	29.09	-	-	-	A	74482534	C	A	74482534	3	1	211	1	0	0	0	0	1	0	0	0	17360	507	18	4	904	4	WBSCR16	7	74482534	Missense_Mutation	SNP	C	TCGA-A8-A099-01A-11W-A019-09		74482534	84656129	6	12971										
COL1A2	0	genome.wustl.edu	37	chr7	94052368	94052368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ttggccgaactggagaagtaGgtgcagttggtccccctggc	15	10	0	1			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	7	94052368	94052368	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.2503	p.G835S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	121	0	0	11	47	81.03	-	-	-	A	94052368	G	A	94052368	3	1	211	1	0	0	0	0	1	0	0	0	3708	1000	35	4	2661	4	COL1A2	7	94052368	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09	19569834	94052368	65086295	7	12972										
PRKDC	0	genome.wustl.edu	37	chr8	48840380	48840380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	cgagttcaatgatgttgtgtGgcaaggacagaagaaaggtc	14	5	1	3			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	8	48840380	48840380	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.2210	p.P737L	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	42	0	0	7	19	73.08	-	-	-	A	48840380	G	A	48840380	3	1	211	1	0	0	0	0	1	0	0	0	12602	1348	47	4	10443	4	PRKDC	8	48840380	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09		48840380	97523642	8	12973										
C9orf170	0	genome.wustl.edu	37	chr9	89771612	89771612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	cctcttgatagatgtcactcGggaagaccatgaaaacagcc	9	11	2	4			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	9	89771612	89771612	G	T	SNP	C9orf170	ENST00000375941	human	ensembl	69_37n	1	known	missense	c.293	p.R98L	0.001	NULL	NULL	-	no_errors	C9orf170	HGNC	ENSG00000204446	211	0	0	26	109	80.74	-	-	-	T	89771612	G	T	89771612	3	4	211	1	0	0	0	0	1	0	0	0	2494	1116	39	3	299	3	C9orf170	9	89771612	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09		89771612	51441819	9	12974										
GANAB	0	genome.wustl.edu	37	chr11	62396766	62396766	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ttgtcccctgtccacacggcTcctgaggaagacaagaagtg	11	12	0	3			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	11	62396766	62396766	T	C	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	silent	c.1902	p.G634	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	41	0	0	69	44	38.94	-	-	-	C	62396766	T	C	62396766	2	2	211	1	0	0	0	0	0	0	0	1	6283	1565	54	5		5	GANAB	11	62396766	Silent	SNP	T	TCGA-A8-A099-01A-11W-A019-09		62396766	72609750	10	12975										
GJB6	0	genome.wustl.edu	37	chr13	20797608	20797608	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ccgatgaaagtgtgcagcgtCccccaatccattgcgctggt	11	13	0	1			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	13	20797608	20797608	C	A	SNP	GJB6	ENST00000241124	human	ensembl	69_37n	-1	known	silent	c.12	p.G4	0.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742	164	0	0	135	32	19.16	-	-	-	A	20797608	C	A	20797608	2	1	211	1	0	0	0	0	0	0	0	1	6464	842	30	2		2	GJB6	13	20797608	Silent	SNP	C	TCGA-A8-A099-01A-11W-A019-09		20797608	94372270	11	12976										
RNF219	0	genome.wustl.edu	37	chr13	79190282	79190282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	atcattgaatccaactcagaGattttgtcaaggtaagcagc	8	8	3	2			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	13	79190282	79190282	G	C	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.1614	p.I538M	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	287	1	0.35	48	112	70	-	-	-	C	79190282	G	C	79190282	3	2	211	1	0	0	0	0	1	0	0	0	13568	932	33	2	570	2	RNF219	13	79190282	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09	58392674	79190282	35979596	12	12977										
PLA2G4F	0	genome.wustl.edu	37	chr15	42438328	42438328	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	tctccacacccaggcacctgCaaaatcttccccactcaagt	4	18	3	0			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	15	42438328	42438328	C	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.1537	p.A513S	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	31	0	0	21	6	22.22	-	-	-	A	42438328	C	A	42438328	3	1	211	1	0	0	0	0	1	0	0	0	12080	710	25	4	1046	4	PLA2G4F	15	42438328	Missense_Mutation	SNP	C	TCGA-A8-A099-01A-11W-A019-09		42438328	60093064	13	12978										
SLC28A2	0	genome.wustl.edu	37	chr15	45560544	45560544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	ctgccctctcctggctggggGaattggtggacatacagggg	16	10	1	0			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	15	45560544	45560544	G	A	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	1	known	missense	c.1336	p.E446K	0.891	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	96	0	0	85	71	45.51	-	-	-	A	45560544	G	A	45560544	3	1	211	1	0	0	0	0	1	0	0	0	14621	1175	41	2	1382	2	SLC28A2	15	45560544	Missense_Mutation	SNP	G	TCGA-A8-A099-01A-11W-A019-09	3122216	45560544	56970848	14	12979										
NINL	0	genome.wustl.edu	37	chr20	25493495	25493495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	cgctctccagagacgctgagCgccagaggtgacttttcagg	13	12	2	4			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	20	25493495	25493495	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.425	p.R142H	0.003	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	18	0	0	20	5	20	-	-	-	T	25493495	C	T	25493495	3	4	211	1	0	0	0	0	1	0	0	0	10492	768	27	1	3807	1	NINL	20	25493495	Missense_Mutation	SNP	C	TCGA-A8-A099-01A-11W-A019-09		25493495	37532025	15	12980										
KCNQ2	0	genome.wustl.edu	37	chr20	62073861	62073861	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	aggatgagacaaaggaagccGatgtaccaggcagtgaccag	14	8	0	2			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	20	62073861	62073861	G	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	silent	c.714	p.I238	0.997	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	63	0	0	56	39	41.05	-	-	-	T	62073861	G	T	62073861	2	4	211	1	0	0	0	0	0	0	0	1	8137	1048	37	3		3	KCNQ2	20	62073861	Silent	SNP	G	TCGA-A8-A099-01A-11W-A019-09	36580366	62073861	951659	16	12981										
RNF128	0	genome.wustl.edu	37	chrX	105937248	105937248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	gagcaatgaaccaggagaatAggtccagttttttttggctc	11	7	0	2			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	X	105937248	105937248	A	G	SNP	RNF128	ENST00000324342	human	ensembl	69_37n	1	known	missense	c.16	p.R6G	0.005	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	313	0	0	35	113	76.35	-	-	-	G	105937248	A	G	105937248	3	3	211	1	0	0	0	0	1	0	0	0	13522	411	15	5	18	5	RNF128	23	105937248	Missense_Mutation	SNP	A	TCGA-A8-A099-01A-11W-A019-09		105937248	49333312	17	12982										
HS6ST2	0	genome.wustl.edu	37	chrX	131762771	131762771	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.930543778830265	0.964102564102564	2.89230769230769	0	1	1	0	tcttccgctgaaactcagtgAggccgaagaacgccatgtgc	11	12	2	3			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	X	131762771	131762771	A	C	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1418	p.L473R	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	310	0	0	43	140	76.5	-	-	-	C	131762771	A	C	131762771	3	2	211	1	0	0	0	0	1	0	0	0	7422	304	11	5	523	5	HS6ST2	23	131762771	Missense_Mutation	SNP	A	TCGA-A8-A099-01A-11W-A019-09	25825523	131762771	23507789	18	12983										
TEKT2	0	genome.wustl.edu	37	chr1	36550806	36550806	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acaggactcgactggtggagAggattgatactgtcaaccgg	14	8	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	36550806	36550806	A	T	SNP	TEKT2	ENST00000207457	human	ensembl	69_37n	1	known	missense	c.199	p.R67W	1.000	pfam_Tektin	pfam_Tektin,superfamily_Prefoldin,prints_Tektin	-	no_errors	TEKT2	HGNC	ENSG00000092850	53	0	0	27	12	30.77	-	-	-	T	36550806	A	T	36550806	3	4	212	1	0	0	0	0	1	0	0	0	15848	295	11	5	205	5	TEKT2	1	36550806	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09		36550806	212699815	1	12984										
MACF1	0	genome.wustl.edu	37	chr1	39799640	39799640	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acagttagggagagattaatTagtttacaaatggaaacaac	9	4	0	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	39799640	39799640	T	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.7491	p.I2497M	0.154	superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	322	0	0	213	29	11.98	-	-	-	G	39799640	T	G	39799640	3	3	212	1	0	0	0	0	1	0	0	0	9211	1742	61	5	7471	5	MACF1	1	39799640	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	3248834	39799640	209450981	2	12985										
ATP6V0B	0	genome.wustl.edu	37	chr1	44442306	44442306	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	catctacggcatcatcatggCaattgtcattagcaacatgg	8	10	4	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	44442306	44442306	C	A	SNP	ATP6V0B	ENST00000472174	human	ensembl	69_37n	1	known	missense	c.323	p.A108E	1.000	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_V0-cplx_csu	-	no_errors	ATP6V0B	HGNC	ENSG00000117410	110	0	0	41	8	16.33	-	-	-	A	44442306	C	A	44442306	3	1	212	1	0	0	0	0	1	0	0	0	1175	710	25	4	341	4	ATP6V0B	1	44442306	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	4642666	44442306	204808315	3	12986										
OMA1	0	genome.wustl.edu	37	chr1	59004723	59004723	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cttacttttggtacttgagaGgcctcctgttcttttgttgt	9	8	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	59004723	59004723	G	C	SNP	OMA1	ENST00000371226	human	ensembl	69_37n	-1	known	missense	c.244	p.L82V	0.000	NULL	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	505	0	0	310	40	11.4	-	-	-	C	59004723	G	C	59004723	3	2	212	1	0	0	0	0	1	0	0	0	10937	1000	35	4	1362	4	OMA1	1	59004723	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	14562417	59004723	190245898	4	12987										
ZNF644	0	genome.wustl.edu	37	chr1	91405516	91405516	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tcctggtgaataatcatatgTtttagaagtgaattgcgatc	9	5	1	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	91405516	91405516	T	A	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.1395	p.K465N	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	194	0	0	162	53	24.65	-	-	-	A	91405516	T	A	91405516	3	1	212	1	0	0	0	0	1	0	0	0	18156	1722	60	5	2604	5	ZNF644	1	91405516	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	32400793	91405516	157845105	5	12988										
ARHGAP29	0	genome.wustl.edu	37	chr1	94643587	94643587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aatgagaaactctaccaagcGtgcttgatttgaatactctg	8	8	2	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	94643587	94643587	G	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.2617	p.R873C	0.066	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	202	0	0	182	23	11.22	-	-	-	A	94643587	G	A	94643587	3	1	212	1	0	0	0	0	1	0	0	0	880	1145	40	1	1180	1	ARHGAP29	1	94643587	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	3238071	94643587	154607034	6	12989										
CDC14A	0	genome.wustl.edu	37	chr1	100921011	100921011	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gttccaggaaaatttttagcAtttagtggaccacatcctaa	7	8	0	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	100921011	100921011	A	G	SNP	CDC14A	ENST00000361544	human	ensembl	69_37n	1	known	silent	c.570	p.A190	0.997	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335	243	0	0	116	26	18.31	-	-	-	G	100921011	A	G	100921011	2	3	212	1	0	0	0	0	0	0	0	1	3085	204	8	5		5	CDC14A	1	100921011	Silent	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	6277424	100921011	148329610	7	12990										
CHIA	0	genome.wustl.edu	37	chr1	111854943	111854943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acgcctttgctgggaggcagAacaacgagatcaccaccatc	10	13	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	111854943	111854943	A	G	SNP	CHIA	ENST00000343320	human	ensembl	69_37n	1	known	missense	c.187	p.N63D	0.009	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216	252	0	0	173	25	12.63	-	-	-	G	111854943	A	G	111854943	3	3	212	1	0	0	0	0	1	0	0	0	3371	246	9	5	197	5	CHIA	1	111854943	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	10933932	111854943	137395678	8	12991										
TRIM46	0	genome.wustl.edu	37	chr1	155150624	155150624	+	Silent	SNP	G	G	A													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ctcagcgcccagatccaggaGcaccggagcctgctggatgg							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	155150624	155150624	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	silent	c.1056	p.E352	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	41	0	0	58	19	24.68	-	-	-	A	155150624	G	A	155150624	2	1	212	1	0	0	0	0	0	0	0	1	16617	962	34	4		4	TRIM46	1	155150624	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	43295681	155150624	94099997	9	12992	155	2								
TRIM46	0	genome.wustl.edu	37	chr1	155150625	155150625	+	Missense_Mutation	SNP	C	C	T													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tcagcgcccagatccaggagCaccggagcctgctggatggc							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	155150625	155150625	C	T	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1057	p.H353Y	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	41	0	0	57	20	25.97	-	-	-	T	155150625	C	T	155150625	3	4	212	1	0	0	0	0	1	0	0	0	16617	710	25	4	1079	4	TRIM46	1	155150625	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	1	155150625	94099996	10	12993	155	2								
LMX1A	0	genome.wustl.edu	37	chr1	165173228	165173228	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aggaaacaatcacccaggttActgagggaggtgtcgtcgct	13	9	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	165173228	165173228	A	T	SNP	LMX1A	ENST00000294816	human	ensembl	69_37n	-1	known	missense	c.1038	p.S346R	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1A	HGNC	ENSG00000162761	88	0	0	54	12	17.91	-	-	-	T	165173228	A	T	165173228	3	4	212	1	0	0	0	0	1	0	0	0	8917	388	14	5	114	5	LMX1A	1	165173228	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	10022603	165173228	84077393	11	12994										
GLUL	0	genome.wustl.edu	37	chr1	182354560	182354560	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cagcctgcaccattccagttCccaggaatgggcttaggatc	10	13	0	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	182354560	182354560	C	T	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	silent	c.735	p.G245	0.004	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	96	0	0	126	18	12.5	-	-	-	T	182354560	C	T	182354560	2	4	212	1	0	0	0	0	0	0	0	1	6530	842	30	2		2	GLUL	1	182354560	Silent	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	17181332	182354560	66896061	12	12995										
NFASC	0	genome.wustl.edu	37	chr1	204966311	204966311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ctctcagctcctcccacattGcccccgactaccgtgggtgc	8	19	1	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	204966311	204966311	G	T	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.3117	p.L1039F	0.915	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	28	0	0	51	8	13.33	-	-	-	T	204966311	G	T	204966311	3	4	212	1	0	0	0	0	1	0	0	0	10431	1310	46	4	3299	4	NFASC	1	204966311	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	22611751	204966311	44284310	13	12996										
ANGEL2	0	genome.wustl.edu	37	chr1	213180387	213180387	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttgaggctgtagtgagccatGattgtgccactgcactccag	12	10	0	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	213180387	213180387	G	A	SNP	ANGEL2	ENST00000460337	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606	61	0	0	71	10	12.35	-	-	-	A	213180387	G	A	213180387	1	1	212	0	1	0	0	0	0	0	0	0	609	1305	45	2		2	ANGEL2	1	213180387	RNA	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	8214076	213180387	36070234	14	12997										
SNAP47	0	genome.wustl.edu	37	chr1	227935803	227935803	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aggacccggggcgaggagctGacgggactcatggctggatc	18	10	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	1	227935803	227935803	G	A	SNP	SNAP47	ENST00000426344	human	ensembl	69_37n	1	known	missense	c.475	p.D159N	0.953	NULL	pfscan_T_SNARE_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNAP47	HGNC	ENSG00000143740	59	0	0	57	26	31.33	-	-	-	A	227935803	G	A	227935803	3	1	212	1	0	0	0	0	1	0	0	0	14921	1277	45	2	507	2	SNAP47	1	227935803	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	14755416	227935803	21314818	15	12998										
USP34	0	genome.wustl.edu	37	chr2	61492665	61492665	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cacggacatcttcatgaggcCagtaatcccatttataaggt	8	10	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	2	61492665	61492665	C	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	nonsense	c.5645	p.W1882*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	328	0	0	250	34	11.97	-	-	-	T	61492665	C	T	61492665	4	4	212	1	0	0	0	0	0	1	0	0	17162	595	21	4	5147	4	USP34	2	61492665	Nonsense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		61492665	181706708	16	12999										
VWA3B	0	genome.wustl.edu	37	chr2	98928506	98928507	+	Frame_Shift_Ins	INS	-	-	G													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gagcccagggtttgggtgatINSggggggggaacacaacatcg							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	2	98928506	98928507	-	G	INS	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1977_1978	p.T662fs	0.000:0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	30	0	0	25	5	16.67	-	-	-	G	98928507	-	G	98928506	7	5	212	1	0	1	1	0	0	0	0	0	17338	1479	51	0		0	VWA3B	2	98928506	Frame_Shift_Ins	INS	-	TCGA-A8-A09A-01A-11W-A019-09	37435841	98928506	144270867	17	13000										
STAT4	0	genome.wustl.edu	37	chr2	191931190	191931190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cgaggctgttaagcatttccTgcagtgtcaaaacttcctga	9	10	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	2	191931190	191931190	T	C	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.596	p.Q199R	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	156	1	0.63	107	20	15.75	-	-	-	C	191931190	T	C	191931190	3	2	212	1	0	0	0	0	1	0	0	0	15358	1580	55	5	1722	5	STAT4	2	191931190	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	93002684	191931190	51268183	18	13001										
MYO1B	0	genome.wustl.edu	37	chr2	192250662	192250662	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	agagtgcctcagacctggcaCagtcactgatgagaccttct	10	12	3	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	2	192250662	192250662	C	A	SNP	MYO1B	ENST00000304164	human	ensembl	69_37n	1	known	missense	c.1406	p.T469K	0.985	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	389	0	0	317	53	14.32	-	-	-	A	192250662	C	A	192250662	3	1	212	1	0	0	0	0	1	0	0	0	10141	478	17	4	1464	4	MYO1B	2	192250662	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	319472	192250662	50948711	19	13002										
CNTN4	0	genome.wustl.edu	37	chr3	3080650	3080650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	accagcgaatgtcagtggtgGcggaggcagcaaatctgaac	14	9	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	3	3080650	3080650	G	A	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.2126	p.G709D	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	81	0	0	47	19	28.79	-	-	-	A	3080650	G	A	3080650	3	1	212	1	0	0	0	0	1	0	0	0	3673	1203	42	4	2188	4	CNTN4	3	3080650	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		3080650	194941780	20	13003										
IRAK2	0	genome.wustl.edu	37	chr3	10255044	10255044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttgctgacgtctacagagggCacaggcacgggaagccattc	13	11	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	3	10255044	10255044	C	T	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	missense	c.682	p.H228Y	0.086	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	54	0	0	79	10	11.24	-	-	-	T	10255044	C	T	10255044	3	4	212	1	0	0	0	0	1	0	0	0	7877	710	25	4	700	4	IRAK2	3	10255044	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	7174394	10255044	187767386	21	13004										
CLASP2	0	genome.wustl.edu	37	chr3	33668523	33668523	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	catgtttatcatctgacaaaAtttccctgattttatttaat	3	7	2	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	3	33668523	33668523	A	G	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.992	p.I331T	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	49	0	0	30	5	14.29	-	-	-	G	33668523	A	G	33668523	3	3	212	1	0	0	0	0	1	0	0	0	3485	101	4	5	3644	5	CLASP2	3	33668523	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	23413479	33668523	164353907	22	13005										
CCDC66	0	genome.wustl.edu	37	chr3	56653531	56653531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgtctgggccttcaacccagGaccctcagtaccaaaattca	7	14	4	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	3	56653531	56653531	G	A	SNP	CCDC66	ENST00000394672	human	ensembl	69_37n	1	known	missense	c.2611	p.D871N	0.517	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	369	1	0.27	194	32	14.1	-	-	-	A	56653531	G	A	56653531	3	1	212	1	0	0	0	0	1	0	0	0	2865	1174	41	2	2673	2	CCDC66	3	56653531	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	22985008	56653531	141368899	23	13006										
HEG1	0	genome.wustl.edu	37	chr3	124748125	124748125	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgaagtttgttctacttgaaGagccgctccttcctctagca	8	11	2	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	3	124748125	124748125	G	C	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.524	p.S175C	0.180	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	74	0	0	54	9	14.29	-	-	-	C	124748125	G	C	124748125	3	2	212	1	0	0	0	0	1	0	0	0	7095	942	33	2	3685	2	HEG1	3	124748125	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	68094594	124748125	73274305	24	13007										
TMEM156	0	genome.wustl.edu	37	chr4	38990517	38990517	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ccttcaagtattttgcggatAgtgaggatgatcaaaaatat	9	5	2	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	4	38990517	38990517	A	C	SNP	TMEM156	ENST00000381938	human	ensembl	69_37n	-1	known	silent	c.693	p.T231	0.735	NULL	NULL	-	no_errors	TMEM156	HGNC	ENSG00000121895	310	0	0	284	39	12.07	-	-	-	C	38990517	A	C	38990517	2	2	212	1	0	0	0	0	0	0	0	1	16168	407	15	5		5	TMEM156	4	38990517	Silent	SNP	A	TCGA-A8-A09A-01A-11W-A019-09		38990517	152163759	25	13008										
KIT	0	genome.wustl.edu	37	chr4	55589813	55589813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gctccaatgtgtggcagcagGattcccagagcccacaatag	11	12	0	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	4	55589813	55589813	G	A	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.1295	p.G432E	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	94	0	0	34	14	29.17	-	-	-	A	55589813	G	A	55589813	3	1	212	1	0	0	0	0	1	0	0	0	8382	1174	41	2	1325	2	KIT	4	55589813	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	16599296	55589813	135564463	26	13009										
ANKRD17	0	genome.wustl.edu	37	chr4	74043217	74043217	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgtttccagcattggattttCcaaatcatcctgatccaaaa	5	10	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	4	74043217	74043217	C	T	SNP	ANKRD17	ENST00000558247	human	ensembl	69_37n	-1	known	nonsense	c.81	p.W27*	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKRD17	HGNC	ENSG00000132466	333	0	0	247	38	13.33	-	-	-	T	74043217	C	T	74043217	4	4	212	1	0	0	0	0	0	1	0	0	646	864	30	2	7516	2	ANKRD17	4	74043217	Nonsense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	18453404	74043217	117111059	27	13010										
PPEF2	0	genome.wustl.edu	37	chr4	76782042	76782042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgagagctgaacagcttccaGgtctgcctgaactcgtccag	11	12	1	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	4	76782042	76782042	G	A	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	silent	c.2040	p.T680	0.767	pirsf_Ser/Thr-Pase_EF-hand_contain,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	178	0	0	123	15	10.87	-	-	-	A	76782042	G	A	76782042	2	1	212	1	0	0	0	0	0	0	0	1	12381	987	35	4		4	PPEF2	4	76782042	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	2738825	76782042	114372234	28	13011										
ELOVL6	0	genome.wustl.edu	37	chr4	110980805	110980805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aatgcataagcccagaatttGctgacaggtccattgtaaaa	8	8	0	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	4	110980805	110980805	G	C	SNP	ELOVL6	ENST00000394607	human	ensembl	69_37n	-1	known	missense	c.327	p.S109R	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL6	HGNC	ENSG00000170522	168	1	0.59	178	20	10.1	-	-	-	C	110980805	G	C	110980805	3	2	212	1	0	0	0	0	1	0	0	0	5115	1310	46	4	478	4	ELOVL6	4	110980805	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	34198763	110980805	80173471	29	13012										
MTRR	0	genome.wustl.edu	37	chr5	7878078	7878078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttagaacttgtggttgagccGtggattgctggactctggcc	14	8	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	5	7878078	7878078	G	A	SNP	MTRR	ENST00000510525	human	ensembl	69_37n	1	known	missense	c.448	p.V150M	0.030	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_Flavodoxin/NO_synth,pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTRR	HGNC	ENSG00000124275	118	0	0	125	19	13.1	-	-	-	A	7878078	G	A	7878078	3	1	212	1	0	0	0	0	1	0	0	0	10033	1132	40	1	522	1	MTRR	5	7878078	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		7878078	173037182	30	13013										
PCSK1	0	genome.wustl.edu	37	chr5	95746673	95746673	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gaagcccagacgaagatggaCcccttcccctgtctccccta	8	17	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	5	95746673	95746673	C	A	SNP	PCSK1	ENST00000311106	human	ensembl	69_37n	-1	known	silent	c.900	p.G300	0.986	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426	277	1	0.36	149	31	17.03	-	-	-	A	95746673	C	A	95746673	2	1	212	1	0	0	0	0	0	0	0	1	11673	494	18	4		4	PCSK1	5	95746673	Silent	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	87868595	95746673	85168587	31	13014										
CCDC112	0	genome.wustl.edu	37	chr5	114611095	114611095	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	atcatcccaggcaccttgtcGccctcctgtttgctgaagga	9	14	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	5	114611095	114611095	G	A	SNP	CCDC112	ENST00000379611	human	ensembl	69_37n	-1	known	nonsense	c.736	p.R246*	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221	285	0	0	172	51	22.87	-	-	-	A	114611095	G	A	114611095	4	1	212	1	0	0	0	0	0	1	0	0	2774	1095	38	1	873	1	CCDC112	5	114611095	Nonsense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	18864422	114611095	66304165	32	13015										
NMUR2	0	genome.wustl.edu	37	chr5	151777641	151777641	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acagcatcttgttgactgatTttctgcagggtctttgaata	9	7	3	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	5	151777641	151777641	T	G	SNP	NMUR2	ENST00000255262	human	ensembl	69_37n	-1	known	missense	c.791	p.K264T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911	259	0	0	167	22	11.64	-	-	-	G	151777641	T	G	151777641	3	3	212	1	0	0	0	0	1	0	0	0	10579	1841	64	5	468	5	NMUR2	5	151777641	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	37166546	151777641	29137619	33	13016										
ADAM19	0	genome.wustl.edu	37	chr5	156907994	156907994	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tcatccctccagccctctgtGatctgtattctggaaactgg	8	13	4	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	5	156907994	156907994	G	C	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	nonsense	c.2726	p.S909*	0.022	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	101	0	0	67	12	15.19	-	-	-	C	156907994	G	C	156907994	4	2	212	1	0	0	0	0	0	1	0	0	240	1294	45	2	40	2	ADAM19	5	156907994	Nonsense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	5130353	156907994	24007266	34	13017										
NEDD9	0	genome.wustl.edu	37	chr6	11213899	11213899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cggtcaggatgtctcccttgCgaaaggccagttcctcggca	12	13	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	11213899	11213899	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.74	p.R25H	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	194	0	0	195	26	11.76	-	-	-	T	11213899	C	T	11213899	3	4	212	1	0	0	0	0	1	0	0	0	10385	768	27	1	2524	1	NEDD9	6	11213899	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		11213899	159901168	35	13018										
CDKAL1	0	genome.wustl.edu	37	chr6	21201369	21201369	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gccaaagaaccctgcgttcaTggggaagatggttgaagtgg	15	7	1	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	21201369	21201369	T	G	SNP	CDKAL1	ENST00000274695	human	ensembl	69_37n	1	known	missense	c.1412	p.M471R	1.000	pfam_TRAM_dom,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	297	1	0.33	275	62	18.4	-	-	-	G	21201369	T	G	21201369	3	3	212	1	0	0	0	0	1	0	0	0	3181	1464	51	5	1462	5	CDKAL1	6	21201369	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	9987470	21201369	149913698	36	13019										
NKAPL	0	genome.wustl.edu	37	chr6	28227179	28227179	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gtatcccggtccagctattcCgaggacatcgtgggctctcg	12	13	1	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	28227179	28227179	C	A	SNP	NKAPL	ENST00000343684	human	ensembl	69_37n	1	known	silent	c.30	p.S10	0.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134	41	0	0	20	5	20	-	-	-	A	28227179	C	A	28227179	2	1	212	1	0	0	0	0	0	0	0	1	10512	639	23	3		3	NKAPL	6	28227179	Silent	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	7025810	28227179	142887888	37	13020										
B3GALT4	0	genome.wustl.edu	37	chr6	33245209	33245209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gccgcaccatgcagctcaggCtcttccggcgcctccttctc	9	19	3	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	33245209	33245209	C	A	SNP	B3GALT4	ENST00000451237	human	ensembl	69_37n	1	known	missense	c.13	p.L5I	0.131	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863	53	0	0	27	4	12.9	-	-	-	A	33245209	C	A	33245209	3	1	212	1	0	0	0	0	1	0	0	0	1253	797	28	4	15	4	B3GALT4	6	33245209	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	5018030	33245209	137869858	38	13021										
KCNQ5	0	genome.wustl.edu	37	chr6	73900398	73900398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tctgctggtcatctggacatGttgtgtagaattaaaagcct	10	7	3	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	73900398	73900398	G	T	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.1710	p.M570I	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	125	0	0	99	23	18.85	-	-	-	T	73900398	G	T	73900398	3	4	212	1	0	0	0	0	1	0	0	0	8140	1377	48	4	1787	4	KCNQ5	6	73900398	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	40655189	73900398	97214669	39	13022										
PRSS35	0	genome.wustl.edu	37	chr6	84233451	84233451	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ggcacccgaaccttaaccagGgtgaaagttcaagatttggt	11	9	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	84233451	84233451	G	A	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	silent	c.291	p.R97	0.026	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	210	0	0	84	64	43.24	-	-	-	A	84233451	G	A	84233451	2	1	212	1	0	0	0	0	0	0	0	1	12704	1223	43	4		4	PRSS35	6	84233451	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	10333053	84233451	86881616	40	13023										
GRIK2	0	genome.wustl.edu	37	chr6	102124623	102124623	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aagaaatgaaaagaggcaagGagtttcatgtaatctttgat	10	3	2	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	102124623	102124623	G	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.667	p.E223Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	152	0	0	79	14	15.05	-	-	-	C	102124623	G	C	102124623	3	2	212	1	0	0	0	0	1	0	0	0	6825	1175	41	2	681	2	GRIK2	6	102124623	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	17891172	102124623	68990444	41	13024										
AIM1	0	genome.wustl.edu	37	chr6	106967193	106967193	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acattcgaggccaaaggaatActcctgcctctagtaaaacg	8	11	1	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	6	106967193	106967193	A	G	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.886	p.T296A	0.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	94	0	0	106	16	12.8	-	-	-	G	106967193	A	G	106967193	3	3	212	1	0	0	0	0	1	0	0	0	430	391	14	5	892	5	AIM1	6	106967193	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	4842570	106967193	64147874	42	13025										
CDCA7L	0	genome.wustl.edu	37	chr7	21947807	21947807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	caaagcatctgaactctcctGgctctcatcccgagagtcat	7	14	4	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	21947807	21947807	G	T	SNP	CDCA7L	ENST00000406877	human	ensembl	69_37n	-1	known	missense	c.622	p.Q208K	0.900	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649	77	0	0	52	11	17.46	-	-	-	T	21947807	G	T	21947807	3	4	212	1	0	0	0	0	1	0	0	0	3120	1357	47	4	770	4	CDCA7L	7	21947807	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		21947807	137190856	43	13026										
SLC26A5	0	genome.wustl.edu	37	chr7	103051936	103051936	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aaggcatctctggcctctgtGccattggttgcatttactcc	9	12	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	103051936	103051936	G	T	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	silent	c.501	p.G167	0.272	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	247	0	0	168	20	10.64	-	-	-	T	103051936	G	T	103051936	2	4	212	1	0	0	0	0	0	0	0	1	14609	1306	46	4		4	SLC26A5	7	103051936	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	81104129	103051936	56086727	44	13027										
RINT1	0	genome.wustl.edu	37	chr7	105187507	105187507	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acagttaaattctggcataaAattctcaaggacaagcttac	6	8	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	105187507	105187507	A	T	SNP	RINT1	ENST00000257700	human	ensembl	69_37n	1	known	missense	c.666	p.K222N	1.000	NULL	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249	130	0	0	161	37	18.69	-	-	-	T	105187507	A	T	105187507	3	4	212	1	0	0	0	0	1	0	0	0	13462	11	1	5	684	5	RINT1	7	105187507	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	2135571	105187507	53951156	45	13028										
CPA1	0	genome.wustl.edu	37	chr7	130025723	130025723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gacagccctggcctctctctAcgggaccaagttcaactatg	9	14	3	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	130025723	130025723	A	G	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.1031	p.Y344C	0.999	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	19	0	0	22	7	24.14	-	-	-	G	130025723	A	G	130025723	3	3	212	1	0	0	0	0	1	0	0	0	3819	391	14	5	1065	5	CPA1	7	130025723	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	24838216	130025723	29112940	46	13029										
HIPK2	0	genome.wustl.edu	37	chr7	139305147	139305147	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cccttctgtttcccacttacCtggttgtggacagtggtcag	10	12	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	139305147	139305147	C	T	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	silent	c.1782	p.Q594	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	328	0	0	215	31	12.6	-	-	-	T	139305147	C	T	139305147	2	4	212	1	0	0	0	0	0	0	0	1	7168	695	24	4		4	HIPK2	7	139305147	Silent	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	9279424	139305147	19833516	47	13030										
HIPK2	0	genome.wustl.edu	37	chr7	139416107	139416107	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ccgggccaggatgctcacttCaatctgaccttgtcgggcat	11	13	3	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	139416107	139416107	C	A	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	nonsense	c.727	p.E243*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	183	0	0	203	23	10.18	-	-	-	A	139416107	C	A	139416107	4	1	212	1	0	0	0	0	0	1	0	0	7168	835	29	2	2925	2	HIPK2	7	139416107	Nonsense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	110960	139416107	19722556	48	13031										
MGAM	0	genome.wustl.edu	37	chr7	141766522	141766522	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gtgcggcctctgctccatgaGtgagtgtccagcagggatcc	14	12	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	141766522	141766522	G	C	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	splice_site	c.4919+1	e40+1	1.000	-	-	-	no_errors	MGAM	HGNC	ENSG00000257335	85	0	0	71	16	18.39	-	-	-	C	141766522	G	C	141766522	5	2	212	1	0	0	0	0	0	0	1	0	9612	1044	36	4		4	MGAM	7	141766522	Splice_Site	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	2350415	141766522	17372141	49	13032										
MGAM	0	genome.wustl.edu	37	chr7	141802435	141802435	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gttttttgtttgcagataccTatgggaaaggactctattac	9	6	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	7	141802435	141802435	T	G	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.5281	p.Y1761D	0.818	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	77	0	0	56	22	28.21	-	-	-	G	141802435	T	G	141802435	3	3	212	1	0	0	0	0	1	0	0	0	9612	1522	53	5	5459	5	MGAM	7	141802435	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	35913	141802435	17336228	50	13033										
LZTS1	0	genome.wustl.edu	37	chr8	20112577	20112577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	agccaaacctcagcagcccgTcggaataccggttgagcttc	10	14	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	8	20112577	20112577	T	C	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	missense	c.116	p.D39G	0.999	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	60	0	0	22	8	26.67	-	-	-	C	20112577	T	C	20112577	3	2	212	1	0	0	0	0	1	0	0	0	9205	1667	58	5	1686	5	LZTS1	8	20112577	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09		20112577	126251445	51	13034										
EXT1	0	genome.wustl.edu	37	chr8	118842508	118842508	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	atcttctcaactgaagaaaaAtaagcctcccacaagaattg	5	10	2	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	8	118842508	118842508	A	C	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	nonsense	c.1245	p.Y415*	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	125	0	0	86	84	49.12	-	-	-	C	118842508	A	C	118842508	4	2	212	1	0	0	0	0	0	1	0	0	5360	108	4	5	1027	5	EXT1	8	118842508	Nonsense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	98729931	118842508	27521514	52	13035										
JAK2	0	genome.wustl.edu	37	chr9	5022119	5022119	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gttcttcaggtgtatctttaCcattcccttgggaaatctga	8	9	4	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	5022119	5022119	C	A	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	nonsense	c.132	p.Y44*	0.996	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	548	0	0	289	150	34.17	-	-	-	A	5022119	C	A	5022119	4	1	212	1	0	0	0	0	0	1	0	0	7992	518	18	4	134	4	JAK2	9	5022119	Nonsense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		5022119	136191312	53	13036										
CNTLN	0	genome.wustl.edu	37	chr9	17235769	17235769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gacttggagaagaaatttaaAgataaaagtcaagaaattaa	8	2	1	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	17235769	17235769	A	T	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.648	p.K216N	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	482	0	0	273	64	18.99	-	-	-	T	17235769	A	T	17235769	3	4	212	1	0	0	0	0	1	0	0	0	3669	69	3	5	662	5	CNTLN	9	17235769	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	12213650	17235769	123977662	54	13037										
IFNA10	0	genome.wustl.edu	37	chr9	21206600	21206600	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tcatgatttctgctctgacaAcctcccaggcacaagggctg	9	13	3	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	21206600	21206600	A	C	SNP	IFNA10	ENST00000357374	human	ensembl	69_37n	-1	known	missense	c.497	p.V166G	0.013	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803	637	6	0.93	454	75	14.15	-	-	-	C	21206600	A	C	21206600	3	2	212	1	0	0	0	0	1	0	0	0	7586	43	2	5	76	5	IFNA10	9	21206600	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	3970831	21206600	120006831	55	13038										
TRPM6	0	genome.wustl.edu	37	chr9	77377214	77377214	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	caccagtttcatcaccttctGaaaatgcccagtttacatat	4	12	3	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	77377214	77377214	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.4373	p.S1458L	0.999	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	331	0	0	182	30	14.15	-	-	-	A	77377214	G	A	77377214	3	1	212	1	0	0	0	0	1	0	0	0	16686	1294	45	2	1751	2	TRPM6	9	77377214	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	56170614	77377214	63836217	56	13039										
DAPK1	0	genome.wustl.edu	37	chr9	90220079	90220079	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aacaagacggacgtcatcctGatcttggaactgtgagtgcc	11	10	2	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	90220079	90220079	G	T	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	silent	c.273	p.L91	0.859	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	72	0	0	72	14	16.28	-	-	-	T	90220079	G	T	90220079	2	4	212	1	0	0	0	0	0	0	0	1	4267	1277	45	2		2	DAPK1	9	90220079	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	12842865	90220079	50993352	57	13040										
AKNA	0	genome.wustl.edu	37	chr9	117120303	117120303	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ctactttggtgggatgctgcGgacttggtgcctggagggtg	18	7	0	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	9	117120303	117120303	G	A	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	silent	c.2637	p.S879	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	47	0	0	43	8	15.69	-	-	-	A	117120303	G	A	117120303	2	1	212	1	0	0	0	0	0	0	0	1	463	1103	39	1		1	AKNA	9	117120303	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	26900224	117120303	24093128	58	13041										
KIF20B	0	genome.wustl.edu	37	chr10	91497158	91497158	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttaaagggtctatccatgttAgttcagctatcactgaagac	8	8	3	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	10	91497158	91497158	A	T	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	missense	c.2650	p.S884C	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	229	0	0	141	16	10.19	-	-	-	T	91497158	A	T	91497158	3	4	212	1	0	0	0	0	1	0	0	0	8339	420	15	5	2514	5	KIF20B	10	91497158	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09		91497158	44037589	59	13042										
LOXL4	0	genome.wustl.edu	37	chr10	100015449	100015449	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cctgagcagcgcaccccactCatcaccacctcctgggccct	7	21	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	10	100015449	100015449	C	A	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	missense	c.1476	p.M492I	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	40	0	0	28	7	20	-	-	-	A	100015449	C	A	100015449	3	1	212	1	0	0	0	0	1	0	0	0	8968	826	29	2	818	2	LOXL4	10	100015449	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	8518291	100015449	35519298	60	13043										
TPP1	0	genome.wustl.edu	37	chr11	6638634	6638634	+	Frame_Shift_Del	DEL	C	C	-													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cacatagtgatgaaactcagCcccagggagcagcagctctg							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	6638634	6638634	C	-	DEL	TPP1	ENST00000299427	human	ensembl	69_37n	-1	known	frame_shift_del	c.406	p.A136fs	1.000	pfam_Peptidase_S53_propep,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340	100	0	0	72	24	25	-	-	-	-	6638634	C	-	6638634	7	5	212	1	0	1	0	1	0	0	0	0	16507	739	26	0	1321	0	TPP1	11	6638634	Frame_Shift_Del	DEL	C	TCGA-A8-A09A-01A-11W-A019-09		6638634	128367882	61	13044										
NAV2	0	genome.wustl.edu	37	chr11	20119207	20119207	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acagcattggagaaatcaagCgcagcaacacttccgaaaca	8	11	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	20119207	20119207	C	G	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.6274	p.R2092G	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	105	0	0	138	32	18.82	-	-	-	G	20119207	C	G	20119207	3	3	212	1	0	0	0	0	1	0	0	0	10256	768	27	3	6337	3	NAV2	11	20119207	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	13480573	20119207	114887309	62	13045										
ALG8	0	genome.wustl.edu	37	chr11	77820538	77820538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgccaagggagtcactgaggGaaggactgtgtgttggaact	16	6	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	77820538	77820538	G	A	SNP	ALG8	ENST00000299626	human	ensembl	69_37n	-1	known	missense	c.988	p.P330S	0.999	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG8	HGNC	ENSG00000159063	127	0	0	150	23	13.29	-	-	-	A	77820538	G	A	77820538	3	1	212	1	0	0	0	0	1	0	0	0	523	1174	41	2	671	2	ALG8	11	77820538	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	57701331	77820538	57185978	63	13046										
SLC35F2	0	genome.wustl.edu	37	chr11	107676086	107676086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aaaaattgtagaatcttacaGctgtataccactgataattg	6	6	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	107676086	107676086	G	T	SNP	SLC35F2	ENST00000429869	human	ensembl	69_37n	-1	known	missense	c.730	p.L244I	1.000	pfam_DUF914_euk,pfam_DMT,pfam_UAA,pfam_DUF250	pfam_DUF914_euk,pfam_DMT,pfam_UAA,pfam_DUF250	-	no_errors	SLC35F2	HGNC	ENSG00000110660	131	0	0	153	52	25.37	-	-	-	T	107676086	G	T	107676086	3	4	212	1	0	0	0	0	1	0	0	0	14678	985	34	4	410	4	SLC35F2	11	107676086	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	29855548	107676086	27330430	64	13047										
IFT46	0	genome.wustl.edu	37	chr11	118416559	118416559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gcaatcaatctctgccgtggGcaggcttacctggaaggggc	14	11	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	118416559	118416559	G	T	SNP	IFT46	ENST00000264020	human	ensembl	69_37n	-1	known	missense	c.835	p.P279T	1.000	pfam_Intraflagellar_transp_cmplxB	pfam_Intraflagellar_transp_cmplxB	-	no_errors	IFT46	HGNC	ENSG00000118096	81	0	0	78	33	29.73	-	-	-	T	118416559	G	T	118416559	3	4	212	1	0	0	0	0	1	0	0	0	7614	1203	42	4	244	4	IFT46	11	118416559	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	10740473	118416559	16589957	65	13048										
TRIM29	0	genome.wustl.edu	37	chr11	120008036	120008036	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aggtctggtcggtctggcagAagagctccatcgtcttgcca	13	11	3	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	11	120008036	120008036	A	C	SNP	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	missense	c.704	p.F235C	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	64	0	0	44	9	16.98	-	-	-	C	120008036	A	C	120008036	3	2	212	1	0	0	0	0	1	0	0	0	16599	246	9	5	1098	5	TRIM29	11	120008036	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	1591477	120008036	14998480	66	13049										
ADAMTS20	0	genome.wustl.edu	37	chr12	43826141	43826141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tagcagcccaactgggacagGaaaattcattgcaattctct	8	10	2	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	43826141	43826141	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3062	p.S1021F	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	183	0	0	126	17	11.89	-	-	-	A	43826141	G	A	43826141	3	1	212	1	0	0	0	0	1	0	0	0	266	1174	41	2	2745	2	ADAMTS20	12	43826141	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		43826141	90025754	67	13050										
KRT3	0	genome.wustl.edu	37	chr12	53184633	53184633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ggtacttacagatgctgacaGcactcggacactctccagac	9	13	1	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	53184633	53184633	G	A	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	missense	c.1562	p.A521V	0.999	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	31	0	0	40	6	13.04	-	-	-	A	53184633	G	A	53184633	3	1	212	1	0	0	0	0	1	0	0	0	8519	971	34	4	335	4	KRT3	12	53184633	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	9358492	53184633	80667262	68	13051										
OR10A7	0	genome.wustl.edu	37	chr12	55614826	55614826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gatatgatctgtgaaaatcaCaccagagtcactgaatttat	7	7	3	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	55614826	55614826	C	A	SNP	OR10A7	ENST00000326258	human	ensembl	69_37n	1	known	missense	c.18	p.H6Q	0.179	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10A7	HGNC	ENSG00000179919	536	0	0	456	96	17.39	-	-	-	A	55614826	C	A	55614826	3	1	212	1	0	0	0	0	1	0	0	0	10968	477	17	4	20	4	OR10A7	12	55614826	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	2430193	55614826	78237069	69	13052										
LGR5	0	genome.wustl.edu	37	chr12	71978313	71978313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	agaaagcaaacctacgtctgGacaagatcaaaacacccaag	7	11	2	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	71978313	71978313	G	T	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	missense	c.2523	p.W841C	1.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	252	0	0	263	45	14.61	-	-	-	T	71978313	G	T	71978313	3	4	212	1	0	0	0	0	1	0	0	0	8812	1183	41	2	2593	2	LGR5	12	71978313	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	16363487	71978313	61873582	70	13053										
TMTC2	0	genome.wustl.edu	37	chr12	83359523	83359523	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	catgagcagggacactatgaGgtctggccaatgcctctctg	12	11	2	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	83359523	83359523	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	silent	c.1869	p.E623	1.000	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	292	1	0.34	188	41	17.9	-	-	-	A	83359523	G	A	83359523	2	1	212	1	0	0	0	0	0	0	0	1	16356	1014	35	4		4	TMTC2	12	83359523	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	11381210	83359523	50492372	71	13054										
IQCD	0	genome.wustl.edu	37	chr12	113633529	113633529	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gatgagcgtggccgcccgtaCcatgcgcaccatctcctgct	11	16	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	12	113633529	113633529	C	G	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	missense	c.1201	p.V401L	0.985	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	69	0	0	66	17	20.48	-	-	-	G	113633529	C	G	113633529	3	3	212	1	0	0	0	0	1	0	0	0	7859	507	18	4	152	4	IQCD	12	113633529	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	30274006	113633529	20218366	72	13055										
SACS	0	genome.wustl.edu	37	chr13	23929666	23929666	+	Frame_Shift_Del	DEL	T	T	-													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgatgttattgcttggagtcTttttacaatagttacttata							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	13	23929666	23929666	T	-	DEL	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	frame_shift_del	c.1085	p.K362fs	0.011	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	133	0	0	112	14	11.11	-	-	-	-	23929666	T	-	23929666	7	5	212	1	0	1	0	1	0	0	0	0	13890	1609	56	0	12666	0	SACS	13	23929666	Frame_Shift_Del	DEL	T	TCGA-A8-A09A-01A-11W-A019-09		23929666	91240212	73	13056										
COG3	0	genome.wustl.edu	37	chr13	46065675	46065675	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tagagatcactgtgccttggTaagtttctacttgttttggt	10	6	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	13	46065675	46065675	T	C	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	splice_site	c.1095+2	e10+2	1.000	-	-	-	no_errors	COG3	HGNC	ENSG00000136152	208	0	0	126	17	11.89	-	-	-	C	46065675	T	C	46065675	5	2	212	1	0	0	0	0	0	0	1	0	3689	1652	57	5	1135	5	COG3	13	46065675	Splice_Site	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	22136009	46065675	69104203	74	13057										
SUPT16H	0	genome.wustl.edu	37	chr14	21831260	21831260	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttcttcattgagttgagccgCtagttctttctgatgtgctc	9	9	4	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	14	21831260	21831260	C	G	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.1444	p.A482P	1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	212	0	0	255	31	10.84	-	-	-	G	21831260	C	G	21831260	3	3	212	1	0	0	0	0	1	0	0	0	15487	797	28	4	1755	4	SUPT16H	14	21831260	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		21831260	85518280	75	13058										
RBM23	0	genome.wustl.edu	37	chr14	23371049	23371049	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tggggggtaaagaggctggaGagctggaaacactgggaggc	20	5	0	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	14	23371049	23371049	G	A	SNP	RBM23	ENST00000553884	human	ensembl	69_37n	-1	putative	missense	c.613	p.L205F	0.976	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RBM23	HGNC	ENSG00000100461	452	0	0	484	60	11.01	-	-	-	A	23371049	G	A	23371049	3	1	212	1	0	0	0	0	1	0	0	0	13206	929	33	2	37	2	RBM23	14	23371049	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	1539789	23371049	83978491	76	13059										
SYNE2	0	genome.wustl.edu	37	chr14	64519171	64519171	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgctataataaggaagtttcAacttatggttcaagaaagtg	9	4	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	14	64519171	64519171	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.8540	p.Q2847P	0.715	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	220	0	0	131	22	14.38	-	-	-	C	64519171	A	C	64519171	3	2	212	1	0	0	0	0	1	0	0	0	15538	130	5	5	8726	5	SYNE2	14	64519171	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	41148122	64519171	42830369	77	13060										
SIPA1L1	0	genome.wustl.edu	37	chr14	72055185	72055185	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ctcacctacatacaagactgGaccatcactgcacagggaat	7	13	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	14	72055185	72055185	G	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.596	p.G199A	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	419	0	0	192	45	18.99	-	-	-	C	72055185	G	C	72055185	3	2	212	1	0	0	0	0	1	0	0	0	14418	1174	41	2	598	2	SIPA1L1	14	72055185	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	7536014	72055185	35294355	78	13061										
VPS13C	0	genome.wustl.edu	37	chr15	62242616	62242616	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttctggtccatcactgtctgCctacaaatagtggagaatta	8	9	3	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	15	62242616	62242616	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.4537	p.A1513S	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	197	0	0	87	10	10.2	-	-	-	A	62242616	C	A	62242616	3	1	212	1	0	0	0	0	1	0	0	0	17288	753	26	4	6932	4	VPS13C	15	62242616	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		62242616	40288776	79	13062										
SEMA7A	0	genome.wustl.edu	37	chr15	74707008	74707009	+	Frame_Shift_Ins	INS	-	-	A													0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttcagaggccccatgggctcINScaccctctgcgccacctctg							TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	15	74707008	74707009	-	A	INS	SEMA7A	ENST00000261918	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1174_1173	p.E391fs	0.998:0.992	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA7A	HGNC	ENSG00000138623	46	0	0	30	10	25	-	-	-	A	74707009	-	A	74707008	7	5	212	1	0	1	1	0	0	0	0	0	14131	864	30	0	846	0	SEMA7A	15	74707008	Frame_Shift_Ins	INS	-	TCGA-A8-A09A-01A-11W-A019-09	12464392	74707008	27824384	80	13063										
SULT1A4	0	genome.wustl.edu	37	chr16	30212154	30212154	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gggcccctgcagagcttccaAgcccgacctgatgacctgct	11	16	0	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	16	30212154	30212154	A	G	SNP	SULT1A4	ENST00000338971	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.053	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A3	Clone_based_vega_gene	ENSG00000261052	11	0	0	4	5	55.56	-	-	-	G	30212154	A	G	30212154	2	3	212	1	0	0	0	0	0	0	0	1	15466	69	3	5		5	SULT1A4	16	30212154	Silent	SNP	A	TCGA-A8-A09A-01A-11W-A019-09		30212154	60142599	81	13064										
SNX20	0	genome.wustl.edu	37	chr16	50707754	50707754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ccgggagcggcgcacgcagcGgatggcgtagagcaggccca	18	13	0	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	16	50707754	50707754	G	A	SNP	SNX20	ENST00000330943	human	ensembl	69_37n	-1	known	missense	c.514	p.R172C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208	15	0	0	11	4	26.67	-	-	-	A	50707754	G	A	50707754	3	1	212	1	0	0	0	0	1	0	0	0	14981	1116	39	1	583	1	SNX20	16	50707754	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	20495600	50707754	39646999	82	13065										
CHD9	0	genome.wustl.edu	37	chr16	53279531	53279531	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	agaaacttcaggctatcctgAaaccaatgatgttgagacga	9	8	1	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	16	53279531	53279531	A	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.3223	p.K1075Q	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	174	0	0	156	46	22.77	-	-	-	C	53279531	A	C	53279531	3	2	212	1	0	0	0	0	1	0	0	0	3361	247	9	5	3277	5	CHD9	16	53279531	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	2571777	53279531	37075222	83	13066										
NLRC5	0	genome.wustl.edu	37	chr16	57104491	57104491	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ggagggcaccaaggcgctgaTgagggcccttgaggggaaat	18	8	0	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	16	57104491	57104491	T	C	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.4628	p.M1543T	0.371	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	26	0	0	20	4	16.67	-	-	-	C	57104491	T	C	57104491	3	2	212	1	0	0	0	0	1	0	0	0	10542	1464	51	5	4770	5	NLRC5	16	57104491	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	3824960	57104491	33250262	84	13067										
PMFBP1	0	genome.wustl.edu	37	chr16	72170703	72170703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ctggctgtctttctgctcctGcaagtgcttcagtatctggc	10	12	4	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	16	72170703	72170703	G	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.934	p.Q312K	0.774	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	87	0	0	45	14	23.73	-	-	-	T	72170703	G	T	72170703	3	4	212	1	0	0	0	0	1	0	0	0	12208	1328	46	4	2205	4	PMFBP1	16	72170703	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	15066212	72170703	18184050	85	13068										
SLFN12L	0	genome.wustl.edu	37	chr17	33807026	33807026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	cccctccagaattcagcagaGcacacacagctcgtgagaca	8	15	1	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	17	33807026	33807026	G	A	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.296	p.A99V	0.015	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	233	2	0.85	254	30	10.56	-	-	-	A	33807026	G	A	33807026	3	1	212	1	0	0	0	0	1	0	0	0	14824	971	34	4	1575	4	SLFN12L	17	33807026	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		33807026	47388184	86	13069										
RAPGEFL1	0	genome.wustl.edu	37	chr17	38345157	38345157	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ccacccagcaagcaggtgaaGccactcttccgccacttccg	8	18	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	17	38345157	38345157	G	A	SNP	RAPGEFL1	ENST00000264644	human	ensembl	69_37n	1	known	silent	c.255	p.K85	0.995	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RAPGEFL1	HGNC	ENSG00000108352	23	0	0	34	8	19.05	-	-	-	A	38345157	G	A	38345157	2	1	212	1	0	0	0	0	0	0	0	1	13132	962	34	4		4	RAPGEFL1	17	38345157	Silent	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	4538131	38345157	42850053	87	13070										
CCR7	0	genome.wustl.edu	37	chr17	38711716	38711716	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gagcatgccactgaagaagcTcatcttgtagatggcaaaga	11	8	2	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	17	38711716	38711716	T	A	SNP	CCR7	ENST00000246657	human	ensembl	69_37n	-1	known	missense	c.415	p.S139C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Chemokine_CCR7,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCR11,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR7	HGNC	ENSG00000126353	102	0	0	93	20	17.7	-	-	-	A	38711716	T	A	38711716	3	1	212	1	0	0	0	0	1	0	0	0	2975	1551	54	5	725	5	CCR7	17	38711716	Missense_Mutation	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	366559	38711716	42483494	88	13071										
ATP5A1	0	genome.wustl.edu	37	chr18	43667040	43667040	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	acatcaccagcctgtgtttcTatgactggcaaagcagtcaa	8	11	3	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	18	43667040	43667040	T	G	SNP	ATP5A1	ENST00000282050	human	ensembl	69_37n	-1	known	silent	c.1110	p.I370	0.959	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234	163	0	0	86	35	28.93	-	-	-	G	43667040	T	G	43667040	2	3	212	1	0	0	0	0	0	0	0	1	1151	1512	53	5		5	ATP5A1	18	43667040	Silent	SNP	T	TCGA-A8-A09A-01A-11W-A019-09		43667040	34410208	89	13072										
CCNE1	0	genome.wustl.edu	37	chr19	30313457	30313457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgaagcacttcaggggcgtcGctgatgaagatgcacacaac	12	10	1	4			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	19	30313457	30313457	G	A	SNP	CCNE1	ENST00000262643	human	ensembl	69_37n	1	known	missense	c.1057	p.A353T	0.225	pfam_Cyclin_C,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173	123	0	0	119	53	30.64	-	-	-	A	30313457	G	A	30313457	3	1	212	1	0	0	0	0	1	0	0	0	2949	1087	38	1	1095	1	CCNE1	19	30313457	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		30313457	28815526	90	13073										
CATSPERG	0	genome.wustl.edu	37	chr19	38853402	38853402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ggacgtgggcgtggtgctggCcgaccccggctgcatcgagg	19	12	0	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	19	38853402	38853402	C	T	SNP	CATSPERG	ENST00000409235	human	ensembl	69_37n	1	known	missense	c.2405	p.A802V	0.319	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	85	0	0	102	14	11.97	-	-	-	T	38853402	C	T	38853402	3	4	212	1	0	0	0	0	1	0	0	0	2717	739	26	4	2479	4	CATSPERG	19	38853402	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	8539945	38853402	20275581	91	13074										
PSG11	0	genome.wustl.edu	37	chr19	43530506	43530506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gatgtgctctgtgcagggagGggctgagaggggccccatga	19	8	1	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	19	43530506	43530506	G	C	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	missense	c.19	p.P7A	0.010	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	187	0	0	193	25	11.47	-	-	-	C	43530506	G	C	43530506	3	2	212	1	0	0	0	0	1	0	0	0	12734	1232	43	4	1008	4	PSG11	19	43530506	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	4677104	43530506	15598477	92	13075										
PPP5C	0	genome.wustl.edu	37	chr19	46890423	46890423	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aaggccaagtacacagcccaGatgtacgagctctttagcga	10	11	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	19	46890423	46890423	G	A	SNP	PPP5C	ENST00000478046	human	ensembl	69_37n	1	known	missense	c.974	p.R325K	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP5C	HGNC	ENSG00000011485	42	0	0	46	7	13.21	-	-	-	A	46890423	G	A	46890423	3	1	212	1	0	0	0	0	1	0	0	0	12483	933	33	2	1008	2	PPP5C	19	46890423	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09	3359917	46890423	12238560	93	13076										
DEFB115	0	genome.wustl.edu	37	chr20	29847380	29847380	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ttgctgtgtccctaaagaaaAggataaactatcacacattc	6	9	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	20	29847380	29847380	A	T	SNP	DEFB115	ENST00000400552	human	ensembl	69_37n	1	known	missense	c.212	p.K71M	0.015	NULL	NULL	-	no_errors	DEFB115	HGNC	ENSG00000215547	188	0	0	277	50	15.29	-	-	-	T	29847380	A	T	29847380	3	4	212	1	0	0	0	0	1	0	0	0	4439	72	3	5	218	5	DEFB115	20	29847380	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09		29847380	33178140	94	13077										
EPB41L1	0	genome.wustl.edu	37	chr20	34775661	34775661	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gccaagaagctttccatgtaCggagtagacctgcaccatgc	10	12	0	2			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	20	34775661	34775661	C	G	SNP	EPB41L1	ENST00000338074	human	ensembl	69_37n	1	known	nonsense	c.849	p.Y283*	0.174	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L1	HGNC	ENSG00000088367	81	0	0	85	25	22.73	-	-	-	G	34775661	C	G	34775661	4	3	212	1	0	0	0	0	0	1	0	0	5189	547	19	3	875	3	EPB41L1	20	34775661	Nonsense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	4928281	34775661	28249859	95	13078										
IFT52	0	genome.wustl.edu	37	chr20	42275617	42275617	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	gaaacagcattccagaacaaTttctgaagaccatgcctctt	6	11	2	3			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	20	42275617	42275617	T	C	SNP	IFT52	ENST00000373030	human	ensembl	69_37n	1	known	silent	c.1308	p.N436	0.855	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	128	0	0	184	74	28.68	-	-	-	C	42275617	T	C	42275617	2	2	212	1	0	0	0	0	0	0	0	1	7615	1490	52	5		5	IFT52	20	42275617	Silent	SNP	T	TCGA-A8-A09A-01A-11W-A019-09	7499956	42275617	20749903	96	13079										
HNF4A	0	genome.wustl.edu	37	chr20	43042402	43042402	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	aggacagcagcctgccctccAtcaatgcgctcctgcaggcg	11	16	1	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	20	43042402	43042402	A	T	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	1	known	missense	c.454	p.I152F	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	35	0	0	39	7	15.22	-	-	-	T	43042402	A	T	43042402	3	4	212	1	0	0	0	0	1	0	0	0	7304	217	8	5	521	5	HNF4A	20	43042402	Missense_Mutation	SNP	A	TCGA-A8-A09A-01A-11W-A019-09	766785	43042402	19983118	97	13080										
PCNT	0	genome.wustl.edu	37	chr21	47775512	47775512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	agcattgggacacgagtggcGtctggaaccctctgaagggc	15	10	2	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	21	47775512	47775512	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.1907	p.R636H	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	27	0	0	24	5	17.24	-	-	-	A	47775512	G	A	47775512	3	1	212	1	0	0	0	0	1	0	0	0	11663	1145	40	1	1953	1	PCNT	21	47775512	Missense_Mutation	SNP	G	TCGA-A8-A09A-01A-11W-A019-09		47775512	354383	98	13081										
INPP5J	0	genome.wustl.edu	37	chr22	31522391	31522391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	ggtcacatggaacgtgggcaCtgccatgcccccagacgatg	13	13	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	22	31522391	31522391	C	A	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	1	known	missense	c.1301	p.T434N	0.994	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	44	0	0	38	5	11.36	-	-	-	A	31522391	C	A	31522391	3	1	212	1	0	0	0	0	1	0	0	0	7813	565	20	4	207	4	INPP5J	22	31522391	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		31522391	19782175	99	13082										
WWC3	0	genome.wustl.edu	37	chrX	10062266	10062266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgtaggcgtgcctggcgatgCtggtgtaccccagcagttct	14	11	1	0			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	X	10062266	10062266	C	T	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.602	p.A201V	0.595	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	129	0	0	89	25	21.93	-	-	-	T	10062266	C	T	10062266	3	4	212	1	0	0	0	0	1	0	0	0	17510	797	28	4	624	4	WWC3	23	10062266	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09		10062266	145208294	100	13083										
BCOR	0	genome.wustl.edu	37	chrX	39932241	39932241	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgattccagttggggttcggCtttaggttcttgtcggtggg	16	6	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	X	39932241	39932241	C	T	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	silent	c.2358	p.K786	0.703	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	94	0	0	117	14	10.69	-	-	-	T	39932241	C	T	39932241	2	4	212	1	0	0	0	0	0	0	0	1	1390	796	28	4		4	BCOR	23	39932241	Silent	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	29869975	39932241	115338319	101	13084										
HUWE1	0	genome.wustl.edu	37	chrX	53644083	53644083	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0693069306930693	7	0.856159162047239	1.02687338501292	1.01558906210069	1.03145764119601	0.34984520123839	0.950412796697626	0	tgaatacatttgggagggagCcaaggacttcacgggtagca	14	7	1	1			TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecfedc29-5c31-4d3d-b599-fc0a1c0beafa	c3017ca7-a84a-4cc3-9eb0-0336f130be31	X	53644083	53644083	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.1805	p.G602A	1.000	pfam_E3_Ub_ligase_DUF913,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	124	0	0	101	14	12.17	-	-	-	G	53644083	C	G	53644083	3	3	212	1	0	0	0	0	1	0	0	0	7515	739	26	4	11575	4	HUWE1	23	53644083	Missense_Mutation	SNP	C	TCGA-A8-A09A-01A-11W-A019-09	13711842	53644083	101626477	102	13085										
AKR1A1	0	genome.wustl.edu	37	chr1	46033710	46033711	+	Frame_Shift_Ins	INS	-	-	A													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	actatatgctacgactccacINSccactacaaggagacttgga							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	1	46033710	46033711	-	A	INS	AKR1A1	ENST00000351829	human	ensembl	69_37n	1	known	frame_shift_ins	c.413_414	p.H139fs	0.073:0.229	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1A1	HGNC	ENSG00000117448	28	0	0	24	11	31.43	-	-	-	A	46033711	-	A	46033710	7	5	213	1	0	1	1	0	0	0	0	0	465	507	18	0	427	0	AKR1A1	1	46033710	Frame_Shift_Ins	INS	-	TCGA-A8-A09B-01A-11W-A019-09		46033710	203216911	1	13086										
LBX2	0	genome.wustl.edu	37	chr2	74729939	74729940	+	Frame_Shift_Ins	INS	-	-	C													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gccctcctcgacacttttctINSccccccaactccccaagact							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	2	74729939	74729940	-	C	INS	LBX2	ENST00000460508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.48_47	p.E17fs	0.000:0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	LBX2	HGNC	ENSG00000179528	49	0	0	23	3	11.54	-	-	-	C	74729940	-	C	74729939	7	5	213	1	0	1	1	0	0	0	0	0	8708	1538	54	0	544	0	LBX2	2	74729939	Frame_Shift_Ins	INS	-	TCGA-A8-A09B-01A-11W-A019-09		74729939	168469434	2	13087										
ITPR1	0	genome.wustl.edu	37	chr3	4853138	4853138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ggctgcccaatgaaacagctGttccaggtgggtttgggatc	14	9	0	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	3	4853138	4853138	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.7417	p.V2473I	0.051	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	185	0	0	121	21	14.79	-	-	-	A	4853138	G	A	4853138	3	1	213	1	0	0	0	0	1	0	0	0	7974	1377	48	4	7676	4	ITPR1	3	4853138	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09		4853138	193169292	3	13088										
DPPA2	0	genome.wustl.edu	37	chr3	109026960	109026960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aggctgaacagctcttgcagCaattcttgcccatgatgcca	9	12	2	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	3	109026960	109026960	C	T	SNP	DPPA2	ENST00000478945	human	ensembl	69_37n	-1	known	missense	c.577	p.A193T	0.972	NULL	pfscan_SAP_DNA-bd	-	no_errors	DPPA2	HGNC	ENSG00000163530	124	0	0	126	37	22.7	-	-	-	T	109026960	C	T	109026960	3	4	213	1	0	0	0	0	1	0	0	0	4769	710	25	4	331	4	DPPA2	3	109026960	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	104173822	109026960	88995470	4	13089										
C6	0	genome.wustl.edu	37	chr5	41160256	41160256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	atacttactggatttataatCtggagactgtttctcacagt	7	7	2	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	5	41160256	41160256	C	T	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.1672	p.D558N	1.000	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	164	0	0	138	101	42.08	-	-	-	T	41160256	C	T	41160256	3	4	213	1	0	0	0	0	1	0	0	0	2336	913	32	2	1164	2	C6	5	41160256	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		41160256	139755004	5	13090										
MAP3K1	0	genome.wustl.edu	37	chr5	56160761	56160761	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	cgggtgtttattgggcctcaGgtaggattcgtcaccatttt	12	8	2	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	5	56160761	56160761	G	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	silent	c.1035	p.Q345	1.000	pfscan_Znf_SWIM	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	127	0	0	79	37	31.9	-	-	-	A	56160761	G	A	56160761	2	1	213	1	0	0	0	0	0	0	0	1	9314	1014	35	4		4	MAP3K1	5	56160761	Silent	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	15000505	56160761	124754499	6	13091										
MAP3K1	0	genome.wustl.edu	37	chr5	56161795	56161795	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tagtacttctacgtctagttCagaaaacaggttagtacttt	7	7	3	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	5	56161795	56161795	C	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.1292	p.S431*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	129	0	0	84	56	40	-	-	-	A	56161795	C	A	56161795	4	1	213	1	0	0	0	0	0	1	0	0	9314	838	29	2	1314	2	MAP3K1	5	56161795	Nonsense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	1034	56161795	124753465	7	13092										
PCDHB1	0	genome.wustl.edu	37	chr5	140433373	140433373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tgagtttcgctttcttaagcGttttatgcccaacttccctt	6	11	1	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	5	140433373	140433373	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.2318	p.R773H	0.993	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	143	0	0	108	35	24.31	-	-	-	A	140433373	G	A	140433373	3	1	213	1	0	0	0	0	1	0	0	0	11607	1145	40	1	2320	1	PCDHB1	5	140433373	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	84271578	140433373	40481887	8	13093										
TIGD6	0	genome.wustl.edu	37	chr5	149375596	149375596	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aagcatgttggccaagtttaGtgcttttttccgaatgacag	10	7	0	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	5	149375596	149375596	G	C	SNP	TIGD6	ENST00000296736	human	ensembl	69_37n	-1	known	missense	c.316	p.L106V	0.998	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD6	HGNC	ENSG00000164296	223	0	0	182	39	17.65	-	-	-	C	149375596	G	C	149375596	3	2	213	1	0	0	0	0	1	0	0	0	15995	1020	36	4	1253	4	TIGD6	5	149375596	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	8942223	149375596	31539664	9	13094										
RIPK1	0	genome.wustl.edu	37	chr6	3081257	3081257	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ggaaggataattttggaaatCattgaaggaatgtgctactt	11	3	1	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	6	3081257	3081257	C	T	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	silent	c.366	p.I122	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	255	1	0.39	181	43	19.2	-	-	-	T	3081257	C	T	3081257	2	4	213	1	0	0	0	0	0	0	0	1	13466	816	29	2		2	RIPK1	6	3081257	Silent	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		3081257	168033810	10	13095										
DST	0	genome.wustl.edu	37	chr6	56473226	56473226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aaatgagtccaacatagcctCgctgagcttccaggaccaga	9	12	0	3			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	6	56473226	56473226	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.6101	p.R2034Q	1.000	pfam_Plectin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	146	0	0	139	40	22.35	-	-	-	T	56473226	C	T	56473226	3	4	213	1	0	0	0	0	1	0	0	0	4818	899	31	1		1	DST	6	56473226	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	53391969	56473226	114641841	11	13096										
CTAGE9	0	genome.wustl.edu	37	chr6	132031833	132031833	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ggcatcctctaaagatgactCtacttcatagccttcatact	5	12	4	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	6	132031833	132031833	C	T	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	missense	c.325	p.E109K	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	290	1	0.34	187	57	23.36	-	-	-	T	132031833	C	T	132031833	3	4	213	1	0	0	0	0	1	0	0	0	4028	922	32	2	2012	2	CTAGE9	6	132031833	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	75558607	132031833	39083234	12	13097										
SP4	0	genome.wustl.edu	37	chr7	21469678	21469678	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gtgggacttccaatgggaatCaattagtttccacacccacc	8	12	1	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	7	21469678	21469678	C	A	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	missense	c.895	p.Q299K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	86	0	0	55	27	32.93	-	-	-	A	21469678	C	A	21469678	3	1	213	1	0	0	0	0	1	0	0	0	15055	827	29	2	905	2	SP4	7	21469678	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		21469678	137668985	13	13098										
ANK1	0	genome.wustl.edu	37	chr8	41553949	41553950	+	Frame_Shift_Ins	INS	-	-	G													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ggccctcctcctcggccagtINSgggggcggcgtgctgagctt							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	8	41553949	41553950	-	G	INS	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2892_2891	p.L965fs	0.048:0.999	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	12	0	0	8	2	20	-	-	-	G	41553950	-	G	41553949	7	5	213	1	0	1	1	0	0	0	0	0	620	1683	59	0	3147	0	ANK1	8	41553949	Frame_Shift_Ins	INS	-	TCGA-A8-A09B-01A-11W-A019-09		41553949	104810073	14	13099										
ANGPTL2	0	genome.wustl.edu	37	chr9	129870474	129870474	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aggtgctggtacttgtgctcCaggtccttgtacttgctggc	13	10	0	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	9	129870474	129870474	C	A	SNP	ANGPTL2	ENST00000373425	human	ensembl	69_37n	-1	known	silent	c.537	p.L179	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL2	HGNC	ENSG00000136859	43	0	0	38	6	13.64	-	-	-	A	129870474	C	A	129870474	2	1	213	1	0	0	0	0	0	0	0	1	614	581	21	4		4	ANGPTL2	9	129870474	Silent	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		129870474	11342957	15	13100										
TCF7L2	0	genome.wustl.edu	37	chr10	114849277	114849277	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gagccactccttacaaaaagTtggggagccctggtgtattg	12	9	0	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	10	114849277	114849277	T	C	SNP	TCF7L2	ENST00000355717	human	ensembl	69_37n	1	known	missense	c.602	p.V201A	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	62	0	0	60	10	14.29	-	-	-	C	114849277	T	C	114849277	3	2	213	1	0	0	0	0	1	0	0	0	15793	1725	60	5	693	5	TCF7L2	10	114849277	Missense_Mutation	SNP	T	TCGA-A8-A09B-01A-11W-A019-09		114849277	20685470	16	13101										
MLL2	0	genome.wustl.edu	37	chr12	49444769	49444769	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ggttccccaggctcagacagGgctggctctccaagcaaggg	14	13	2	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	12	49444769	49444769	G	C	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.2697	p.A899	0.896	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	79	0	0	18	21	53.85	-	-	-	C	49444769	G	C	49444769	2	2	213	1	0	0	0	0	0	0	0	1	9692	1219	43	4		4	MLL2	12	49444769	Silent	SNP	G	TCGA-A8-A09B-01A-11W-A019-09		49444769	84407126	17	13102										
ESPL1	0	genome.wustl.edu	37	chr12	53684751	53684751	+	Frame_Shift_Del	DEL	T	T	-													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	agctgctacaggactgtggcTggaaatatcctgaccgcact							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	12	53684751	53684751	T	-	DEL	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	frame_shift_del	c.5491	p.W1831fs	1.000	pfam_Peptidase_C50	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	10	0	0	3	2	40	-	-	-	-	53684751	T	-	53684751	7	5	213	1	0	1	0	1	0	0	0	0	5290	1580	55	0	5585	0	ESPL1	12	53684751	Frame_Shift_Del	DEL	T	TCGA-A8-A09B-01A-11W-A019-09	4239982	53684751	80167144	18	13103										
B3GALTL	0	genome.wustl.edu	37	chr13	31903712	31903712	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ttccacaaacactggaacatCgatccagtgaaggtgtattt	8	9	0	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	13	31903712	31903712	C	T	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	silent	c.1404	p.I468	0.964	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	137	0	0	85	40	32	-	-	-	T	31903712	C	T	31903712	2	4	213	1	0	0	0	0	0	0	0	1	1256	874	31	1		1	B3GALTL	13	31903712	Silent	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		31903712	83266166	19	13104										
GPC5	0	genome.wustl.edu	37	chr13	93518661	93518661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tatgacattcactctgataaGtgtggtgatgttacttcccg	9	8	2	3			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	13	93518661	93518661	G	T	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.1688	p.S563I	0.140	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	230	0	0	179	128	41.69	-	-	-	T	93518661	G	T	93518661	3	4	213	1	0	0	0	0	1	0	0	0	6651	1029	36	4	1718	4	GPC5	13	93518661	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	61614949	93518661	21651217	20	13105										
ATP11A	0	genome.wustl.edu	37	chr13	113464932	113464932	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ttctttccttcctttttttaGggttatgaagactggcttcg	8	8	1	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	13	113464932	113464932	G	C	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	splice_site	c.334-1	e5-1	1.000	-	-	-	no_errors	ATP11A	HGNC	ENSG00000068650	59	0	0	51	17	25	-	-	-	C	113464932	G	C	113464932	5	2	213	1	0	0	0	0	0	0	1	0	1123	1014	35	4	351	4	ATP11A	13	113464932	Splice_Site	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	19946271	113464932	1704946	21	13106										
MYO1E	0	genome.wustl.edu	37	chr15	59519659	59519660	+	Frame_Shift_Del	DEL	TG	TG	-													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aaaaagtaaacaggaaaaccTggtaaaatatgtgaaaactc							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	15	59519659	59519660	TG	-	DEL	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	frame_shift_del	c.641_640	p.Q214fs	1.000:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	107	0	0	71	32	31.07	-	-	-	-	59519660	TG	-	59519659	7	5	213	1	0	1	0	1	0	0	0	0	10144	1594	55	0	2773	0	MYO1E	15	59519659	Frame_Shift_Del	DEL	TG	TCGA-A8-A09B-01A-11W-A019-09		59519659	43011733	22	13107										
FAM81A	0	genome.wustl.edu	37	chr15	59784566	59784566	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gccagctctccggtttgggaGatcttcgaggaagagtggca	15	9	2	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	15	59784566	59784566	G	A	SNP	FAM81A	ENST00000288228	human	ensembl	69_37n	1	known	missense	c.391	p.D131N	1.000	NULL	superfamily_Ferritin/RR-like	-	no_errors	FAM81A	HGNC	ENSG00000157470	68	0	0	50	17	25.37	-	-	-	A	59784566	G	A	59784566	3	1	213	1	0	0	0	0	1	0	0	0	5673	942	33	2	401	2	FAM81A	15	59784566	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	264907	59784566	42746826	23	13108										
UBE2Q2	0	genome.wustl.edu	37	chr15	76146749	76146749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	atcctatccatcttcttcacCgatatggtttgtggattctg	7	10	4	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	15	76146749	76146749	C	T	SNP	UBE2Q2	ENST00000267938	human	ensembl	69_37n	1	known	missense	c.203	p.P68L	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q2	HGNC	ENSG00000140367	140	0	0	71	15	17.44	-	-	-	T	76146749	C	T	76146749	3	4	213	1	0	0	0	0	1	0	0	0	16967	652	23	1	345	1	UBE2Q2	15	76146749	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	16362183	76146749	26384643	24	13109										
ERAL1	0	genome.wustl.edu	37	chr17	27185468	27185468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ttgctcaggtgcttgaccaaGtactcccagatccctagtgt	9	12	1	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	17	27185468	27185468	G	A	SNP	ERAL1	ENST00000461894	human	ensembl	69_37n	1	known	missense	c.674	p.S225N	1.000	pfam_GTP_binding_domain,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,tigrfam_Small_GTP-bd_dom	pfam_GTP_binding_domain,pfam_MIRO-like,pfam_Dynamin_GTPase,pfam_AIG1,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERAL1	HGNC	ENSG00000132591	223	0	0	231	35	13.16	-	-	-	A	27185468	G	A	27185468	3	1	213	1	0	0	0	0	1	0	0	0	5239	1020	36	4	697	4	ERAL1	17	27185468	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09		27185468	54009742	25	13110										
SLC26A11	0	genome.wustl.edu	37	chr17	78195381	78195381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tgccttcttcggtgacggcgCtgggtcaggccaggtcctct	14	13	3	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	17	78195381	78195381	C	T	SNP	SLC26A11	ENST00000361193	human	ensembl	69_37n	1	known	silent	c.22	p.L8	0.564	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045	10	0	0	5	4	44.44	-	-	-	T	78195381	C	T	78195381	2	4	213	1	0	0	0	0	0	0	0	1	14605	796	28	4		4	SLC26A11	17	78195381	Silent	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	51009913	78195381	2999829	26	13111										
RAB40B	0	genome.wustl.edu	37	chr17	80615975	80615975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gtgcaccggcgtgcaggacaCgaccgcccggcagcagaggt	16	14	0	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	17	80615975	80615975	C	T	SNP	RAB40B	ENST00000571995	human	ensembl	69_37n	-1	known	missense	c.601	p.V201M	1.000	pfam_SOCS_C,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40B	HGNC	ENSG00000141542	42	0	0	33	5	13.16	-	-	-	T	80615975	C	T	80615975	3	4	213	1	0	0	0	0	1	0	0	0	13024	536	19	1	239	1	RAB40B	17	80615975	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	2420594	80615975	579235	27	13112										
CLEC4G	0	genome.wustl.edu	37	chr19	7795289	7795289	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	aacagctcagtgcggacgtcCtcacggcccctgccggcttc	11	17	2	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	19	7795289	7795289	C	G	SNP	CLEC4G	ENST00000328853	human	ensembl	69_37n	-1	known	missense	c.426	p.E142D	0.004	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4G	HGNC	ENSG00000182566	24	0	0	7	7	50	-	-	-	G	7795289	C	G	7795289	3	3	213	1	0	0	0	0	1	0	0	0	3547	680	24	4	471	4	CLEC4G	19	7795289	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		7795289	51333694	28	13113										
COL5A3	0	genome.wustl.edu	37	chr19	10084293	10084293	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tgggtctccagcgtcccctcGctcaccctgcaggaggcaaa	11	16	2	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	19	10084293	10084293	G	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	nonsense	c.3619	p.R1207*	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	51	0	0	20	18	47.37	-	-	-	A	10084293	G	A	10084293	4	1	213	1	0	0	0	0	0	1	0	0	3728	1095	38	1	1690	1	COL5A3	19	10084293	Nonsense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	2289004	10084293	49044690	29	13114										
RYR1	0	genome.wustl.edu	37	chr19	38948842	38948842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ccctcaccgagggctacaccCcctaccctggggccggcgag	12	19	1	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	19	38948842	38948842	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2077	p.P693S	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	224	0	0	162	27	14.29	-	-	-	T	38948842	C	T	38948842	3	4	213	1	0	0	0	0	1	0	0	0	13854	623	22	4	2147	4	RYR1	19	38948842	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	28864549	38948842	20180141	30	13115										
LTBP4	0	genome.wustl.edu	37	chr19	41123021	41123021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	tgcagatgtggacgaatgccGgaaccggtccttctgcggtg	15	10	1	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	19	41123021	41123021	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.3161	p.R1054Q	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	46	0	0	27	17	38.64	-	-	-	A	41123021	G	A	41123021	3	1	213	1	0	0	0	0	1	0	0	0	9142	1116	39	1	3548	1	LTBP4	19	41123021	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	2174179	41123021	18005962	31	13116										
CNFN	0	genome.wustl.edu	37	chr19	42891312	42891312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	acagggaacttccttactctCggatcttcagttcccgcgcc	8	15	3	0			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	19	42891312	42891312	C	T	SNP	CNFN	ENST00000222032	human	ensembl	69_37n	-1	known	missense	c.332	p.R111Q	1.000	NULL	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	CNFN	HGNC	ENSG00000105427	9	0	0	6	5	45.45	-	-	-	T	42891312	C	T	42891312	3	4	213	1	0	0	0	0	1	0	0	0	3625	884	31	1	10	1	CNFN	19	42891312	Missense_Mutation	SNP	C	TCGA-A8-A09B-01A-11W-A019-09	1768291	42891312	16237671	32	13117										
HUNK	0	genome.wustl.edu	37	chr21	33331189	33331189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	atgccatgttgaccgggacgCtgcctttcacggtggagcct	13	12	1	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	21	33331189	33331189	C	T	SNP	HUNK	ENST00000270112	human	ensembl	69_37n	1	known	silent	c.781	p.L261	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	157	0	0	107	17	13.71	-	-	-	T	33331189	C	T	33331189	2	4	213	1	0	0	0	0	0	0	0	1	7512	796	28	4		4	HUNK	21	33331189	Silent	SNP	C	TCGA-A8-A09B-01A-11W-A019-09		33331189	14798706	33	13118										
OSBP2	0	genome.wustl.edu	37	chr22	31137337	31137338	+	Frame_Shift_Ins	INS	-	-	G													0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	ccaaggccaaggctgtccgcINSgtgatgaacactcattcagg							TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	22	31137337	31137338	-	G	INS	OSBP2	ENST00000332585	human	ensembl	69_37n	1	known	frame_shift_ins	c.834_835	p.V278fs	1.000:0.999	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792	23	0	0	18	6	25	-	-	-	G	31137338	-	G	31137337	7	5	213	1	0	1	1	0	0	0	0	0	11347	755	27	0	840	0	OSBP2	22	31137337	Frame_Shift_Ins	INS	-	TCGA-A8-A09B-01A-11W-A019-09		31137337	20167229	34	13119										
TRPC5	0	genome.wustl.edu	37	chrX	111095568	111095568	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	agggaaatagttgccaggtaGagggagttcattgcaaaatc	13	5	1	1			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	X	111095568	111095568	G	C	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.1335	p.L445	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	262	0	0	265	76	22.29	-	-	-	C	111095568	G	C	111095568	2	2	213	1	0	0	0	0	0	0	0	1	16678	929	33	2		2	TRPC5	23	111095568	Silent	SNP	G	TCGA-A8-A09B-01A-11W-A019-09		111095568	44174992	35	13120										
ABCD1	0	genome.wustl.edu	37	chrX	153008483	153008483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.417088587430098	1.75342465753425	1.75342465753425	1.75342465753425	0.265734265734266	0.921589049248625	0	gaaggacgtcctgtcgggtgGcgagaagcagagaatcggca	17	8	0	2			TCGA-A8-A09B-01A-11W-A019-09	TCGA-A8-A09B-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8be37d2-2743-4fde-9aae-2623b5a03b60	6acddb6d-f866-498b-9b57-f46cbca2cdf9	X	153008483	153008483	G	A	SNP	ABCD1	ENST00000218104	human	ensembl	69_37n	1	known	missense	c.1823	p.G608D	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986	11	0	0	0	3	100	-	-	-	A	153008483	G	A	153008483	3	1	213	1	0	0	0	0	1	0	0	0	60	1203	42	4	1853	4	ABCD1	23	153008483	Missense_Mutation	SNP	G	TCGA-A8-A09B-01A-11W-A019-09	41912915	153008483	2262077	36	13121										
TMEM51	0	genome.wustl.edu	37	chr1	15541743	15541743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcagcaacaagaccgaggtgGgtggcggcatcctcaagagc	15	11	1	2			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	1	15541743	15541743	G	A	SNP	TMEM51	ENST00000303840	human	ensembl	69_37n	1	known	missense	c.160	p.G54S	0.110	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729	36	0	0	89	56	38.62	-	-	-	A	15541743	G	A	15541743	3	1	214	1	0	0	0	0	1	0	0	0	16272	1232	43	4	162	4	TMEM51	1	15541743	Missense_Mutation	SNP	G	TCGA-A8-A09C-01A-11W-A019-09		15541743	233708878	1	13122										
SELP	0	genome.wustl.edu	37	chr1	169578883	169578883	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctcaaggatggagagcaatCcatgcttccgtggacaggac	12	10	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	1	169578883	169578883	C	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.1192	p.D398Y	0.001	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	179	0	0	80	224	73.68	-	-	-	A	169578883	C	A	169578883	3	1	214	1	0	0	0	0	1	0	0	0	14107	855	30	2	1336	2	SELP	1	169578883	Missense_Mutation	SNP	C	TCGA-A8-A09C-01A-11W-A019-09	154037140	169578883	79671738	2	13123										
CDC42BPA	0	genome.wustl.edu	37	chr1	227327350	227327350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttcataagcttcagttgcTaagttgttgtctagagtcct	8	8	3	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	1	227327350	227327350	T	G	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.1317	p.L439F	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	122	0	0	142	76	34.86	-	-	-	G	227327350	T	G	227327350	3	3	214	1	0	0	0	0	1	0	0	0	3101	1519	53	5	3950	5	CDC42BPA	1	227327350	Missense_Mutation	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	57748467	227327350	21923271	3	13124										
ADRA2B	0	genome.wustl.edu	37	chr2	96781252	96781253	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	ttggactcaccctgcccaggINScccccccttggccctgggac							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	2	96781252	96781253	-	C	INS	ADRA2B	ENST00000409345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.637_636	p.P212fs	0.000:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2B,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2B	HGNC	ENSG00000222040	22	0	0	6	3	33.33	-	-	-	C	96781253	-	C	96781252	7	5	214	1	0	1	1	0	0	0	0	0	338	1203	42	0	710	0	ADRA2B	2	96781252	Frame_Shift_Ins	INS	-	TCGA-A8-A09C-01A-11W-A019-09		96781252	146418121	4	13125										
ARHGAP15	0	genome.wustl.edu	37	chr2	144245061	144245061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcaagaaaaaggacttattAaaggtacaggtcattttata	8	4	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	2	144245061	144245061	A	G	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	missense	c.823	p.K275E	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	420	0	0	295	96	24.49	-	-	-	G	144245061	A	G	144245061	3	3	214	1	0	0	0	0	1	0	0	0	868	363	13	5	853	5	ARHGAP15	2	144245061	Missense_Mutation	SNP	A	TCGA-A8-A09C-01A-11W-A019-09	47463809	144245061	98954312	5	13126										
CADPS	0	genome.wustl.edu	37	chr3	62499312	62499312	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggaggtggtaggtactcaCgaatggttaaatccatcact	12	7	2	0			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	3	62499312	62499312	C	T	SNP	CADPS	ENST00000283269	human	ensembl	69_37n	-1	known	splice_site	c.2650+1	e17+1	1.000	-	-	-	no_errors	CADPS	HGNC	ENSG00000163618	27	0	0	22	7	24.14	-	-	-	T	62499312	C	T	62499312	5	4	214	1	0	0	0	0	0	0	1	0	2595	550	19	1	1539	1	CADPS	3	62499312	Splice_Site	SNP	C	TCGA-A8-A09C-01A-11W-A019-09		62499312	135523118	6	13127										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	212	0	0	137	249	64.18	-	-	-	G	178952085	A	G	178952085	3	3	214	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A09C-01A-11W-A019-09	116452773	178952085	19070345	7	13128										
RFC1	0	genome.wustl.edu	37	chr4	39308263	39308263	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaacaccaggagggcctgaCagcaacgctgctttaaaact	9	13	0	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	4	39308263	39308263	C	G	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	silent	c.1947	p.L649	0.979	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	83	0	0	49	35	41.67	-	-	-	G	39308263	C	G	39308263	2	3	214	1	0	0	0	0	0	0	0	1	13327	465	17	4		4	RFC1	4	39308263	Silent	SNP	C	TCGA-A8-A09C-01A-11W-A019-09		39308263	151846013	8	13129										
MUC7	0	genome.wustl.edu	37	chr4	71347001	71347001	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcaactacaccagctccaccAtcttcctcagctccaccaga	4	19	2	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	4	71347001	71347001	A	C	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	silent	c.540	p.P180	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	615	1	0.16	280	176	38.01	-	-	-	C	71347001	A	C	71347001	2	2	214	1	0	0	0	0	0	0	0	1	10053	204	8	5		5	MUC7	4	71347001	Silent	SNP	A	TCGA-A8-A09C-01A-11W-A019-09	32038738	71347001	119807275	9	13130										
FHDC1	0	genome.wustl.edu	37	chr4	153897755	153897755	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcccagagtctgcggagggTcccagtgccaacacggaggc	15	14	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	4	153897755	153897755	T	G	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	silent	c.3312	p.G1104	0.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	14	0	0	5	5	50	-	-	-	G	153897755	T	G	153897755	2	3	214	1	0	0	0	0	0	0	0	1	5922	1654	58	5		5	FHDC1	4	153897755	Silent	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	82550754	153897755	37256521	10	13131										
PDE4D	0	genome.wustl.edu	37	chr5	58511603	58511603	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgcctgcccttgtacttacAtatcactggcaatggaggag	10	10	1	0			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	5	58511603	58511603	A	G	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.647	p.I216T	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	162	0	0	126	190	60.13	-	-	-	G	58511603	A	G	58511603	3	3	214	1	0	0	0	0	1	0	0	0	11715	231	8	5	1838	5	PDE4D	5	58511603	Missense_Mutation	SNP	A	TCGA-A8-A09C-01A-11W-A019-09		58511603	122403657	11	13132										
VCAN	0	genome.wustl.edu	37	chr5	82835164	82835164	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	caagaaattgaaagtgaaacAacatcagaggaacaaattca							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	5	82835164	82835164	A	-	DEL	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	frame_shift_del	c.6342	p.T2115fs	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	330	0	0	267	127	32.07	-	-	-	-	82835164	A	-	82835164	7	5	214	1	0	1	0	1	0	0	0	0	17235	117	5	0	6368	0	VCAN	5	82835164	Frame_Shift_Del	DEL	A	TCGA-A8-A09C-01A-11W-A019-09	24323561	82835164	98080096	12	13133										
DBH	0	genome.wustl.edu	37	chr9	136513070	136513071	+	Frame_Shift_Ins	INS	-	-	AT													0	0	1	0	0	0	1	1	0	gtgtacacgccagtgatggcINScattccaccacgggagaccg							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	9	136513070	136513071	-	AT	INS	DBH	ENST00000393056	human	ensembl	69_37n	1	known	frame_shift_ins	c.1127_1128	p.I377fs	1.000:0.994	superfamily_PHM/PNGase_F_dom,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	14	0	0	25	19	43.18	-	-	-	AT	136513071	-	AT	136513070	7	5	214	1	0	1	1	0	0	0	0	0	4282	739	26	0	1149	0	DBH	9	136513070	Frame_Shift_Ins	INS	-	TCGA-A8-A09C-01A-11W-A019-09		136513070	4700361	13	13134										
SEC31B	0	genome.wustl.edu	37	chr10	102250551	102250551	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atattctgtgtcctgggaccCtgataagggctaggatggga	14	7	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	10	102250551	102250551	C	A	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.2562	p.Q854H	0.012	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	59	0	0	119	40	24.84	-	-	-	A	102250551	C	A	102250551	3	1	214	1	0	0	0	0	1	0	0	0	14087	680	24	4	1005	4	SEC31B	10	102250551	Missense_Mutation	SNP	C	TCGA-A8-A09C-01A-11W-A019-09		102250551	33284196	14	13135										
SEC31B	0	genome.wustl.edu	37	chr10	102258465	102258465	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctcagggtcagggtaccttTtgtgatggggatctcccaag	13	10	3	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	10	102258465	102258465	T	C	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.1681	p.K561E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	128	0	0	197	51	20.56	-	-	-	C	102258465	T	C	102258465	3	2	214	1	0	0	0	0	1	0	0	0	14087	1850	64	5	1910	5	SEC31B	10	102258465	Missense_Mutation	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	7914	102258465	33276282	15	13136										
ZNF511	0	genome.wustl.edu	37	chr10	135125257	135125257	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	ccccaggggacagtggagagCggtcagaaggggaggccatg							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	10	135125257	135125257	C	-	DEL	ZNF511	ENST00000368554	human	ensembl	69_37n	1	known	frame_shift_del	c.397	p.R133fs	0.024	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	19	0	0	11	12	52.17	-	-	-	-	135125257	C	-	135125257	7	5	214	1	0	1	0	1	0	0	0	0	18051	759	27	0	610	0	ZNF511	10	135125257	Frame_Shift_Del	DEL	C	TCGA-A8-A09C-01A-11W-A019-09	32866792	135125257	409490	16	13137										
DENND5A	0	genome.wustl.edu	37	chr11	9200591	9200591	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cactgaactttgagatccttAttgctgctggggtcttcacg	10	10	2	2			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	11	9200591	9200591	A	G	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	silent	c.1485	p.N495	0.994	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	192	1	0.52	35	189	84.38	-	-	-	G	9200591	A	G	9200591	2	3	214	1	0	0	0	0	0	0	0	1	4472	446	16	5		5	DENND5A	11	9200591	Silent	SNP	A	TCGA-A8-A09C-01A-11W-A019-09		9200591	125805925	17	13138										
AGBL2	0	genome.wustl.edu	37	chr11	47688436	47688436	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggctattacatttgtcacaTtgtgggagagaggtgctaat	12	5	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	11	47688436	47688436	T	A	SNP	AGBL2	ENST00000528244	human	ensembl	69_37n	-1	putative	missense	c.2406	p.Q802H	0.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	25	0	0	29	8	21.62	-	-	-	A	47688436	T	A	47688436	3	1	214	1	0	0	0	0	1	0	0	0	376	1508	52	5		5	AGBL2	11	47688436	Missense_Mutation	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	38487845	47688436	87318080	18	13139										
CD5	0	genome.wustl.edu	37	chr11	60886752	60886752	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagtctggcggccagcactgTgccggcgtggtggagttcta	16	11	2	0			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	11	60886752	60886752	T	C	SNP	CD5	ENST00000347785	human	ensembl	69_37n	1	known	silent	c.510	p.C170	0.323	superfamily_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	15	0	0	9	9	50	-	-	-	C	60886752	T	C	60886752	2	2	214	1	0	0	0	0	0	0	0	1	3050	1702	59	5		5	CD5	11	60886752	Silent	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	13198316	60886752	74119764	19	13140										
MAML2	0	genome.wustl.edu	37	chr11	95826166	95826166	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctggctttgctgacccaaGtcaatgttaaatgggtcatc	9	10	3	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	11	95826166	95826166	G	A	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1029	p.D343	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	171	0	0	209	45	17.72	-	-	-	A	95826166	G	A	95826166	2	1	214	1	0	0	0	0	0	0	0	1	9277	1020	36	4		4	MAML2	11	95826166	Silent	SNP	G	TCGA-A8-A09C-01A-11W-A019-09	34939414	95826166	39180350	20	13141										
DIP2B	0	genome.wustl.edu	37	chr12	51138497	51138497	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcattacctcatcgttggcGtcgtggttgtggtggaccca	13	10	1	0			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	12	51138497	51138497	G	C	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.4606	p.V1536L	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	49	0	0	60	45	42.86	-	-	-	C	51138497	G	C	51138497	3	2	214	1	0	0	0	0	1	0	0	0	4564	1145	40	3	4756	3	DIP2B	12	51138497	Missense_Mutation	SNP	G	TCGA-A8-A09C-01A-11W-A019-09		51138497	82713398	21	13142										
PLXNC1	0	genome.wustl.edu	37	chr12	94641830	94641830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgggaggaccccagattcaCggggtatcgggtggaatccg	16	10	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	12	94641830	94641830	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	missense	c.2540	p.T847M	0.997	superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	109	0	0	116	108	47.79	-	-	-	T	94641830	C	T	94641830	3	4	214	1	0	0	0	0	1	0	0	0	12200	536	19	1	2590	1	PLXNC1	12	94641830	Missense_Mutation	SNP	C	TCGA-A8-A09C-01A-11W-A019-09	43503333	94641830	39210065	22	13143										
OR11G2	0	genome.wustl.edu	37	chr14	20665887	20665887	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgacaccaagatcatctcGttctctggctgcttcctcca	6	15	4	2			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	14	20665887	20665887	G	A	SNP	OR11G2	ENST00000357366	human	ensembl	69_37n	1	known	silent	c.393	p.S131	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	77	0	0	14	142	42.51	-	-	-	A	20665887	G	A	20665887	2	1	214	1	0	0	0	0	0	0	0	1	10998	1132	40	1		1	OR11G2	14	20665887	Silent	SNP	G	TCGA-A8-A09C-01A-11W-A019-09		20665887	86683653	23	13144										
MYO5B	0	genome.wustl.edu	37	chr18	47363248	47363248	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccactcctcaagctgacttaTattgtaccttagccataggt	6	12	1	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	18	47363248	47363248	T	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.5146	p.I1716V	0.999	pfam_Dil_domain,pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	39	0	0	45	12	21.05	-	-	-	C	47363248	T	C	47363248	3	2	214	1	0	0	0	0	1	0	0	0	10151	1406	49	5	412	5	MYO5B	18	47363248	Missense_Mutation	SNP	T	TCGA-A8-A09C-01A-11W-A019-09		47363248	30714000	24	13145										
CBLC	0	genome.wustl.edu	37	chr19	45287592	45287593	+	Frame_Shift_Del	DEL	TC	TC	-													0	0	1	0	0	0	1	1	0	tgtgagctcagatggcagcaTcctgcagaccatccctgcca							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	19	45287592	45287593	TC	-	DEL	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	frame_shift_del	c.851_852	p.I284fs	1.000:1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	38	0	0	62	48	43.64	-	-	-	-	45287593	TC	-	45287592	7	5	214	1	0	1	0	1	0	0	0	0	2727	1435	50	0	869	0	CBLC	19	45287592	Frame_Shift_Del	DEL	TC	TCGA-A8-A09C-01A-11W-A019-09		45287592	13841391	25	13146										
ZNF415	0	genome.wustl.edu	37	chr19	53612815	53612815	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacttctcaacatggttacaTtcataaattttcccttcagc	4	11	3	0			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	19	53612815	53612815	T	C	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	silent	c.627	p.E209	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	199	0	0	111	181	61.77	-	-	-	C	53612815	T	C	53612815	2	2	214	1	0	0	0	0	0	0	0	1	17988	1490	52	5		5	ZNF415	19	53612815	Silent	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	8325223	53612815	5516168	26	13147										
LILRA6	0	genome.wustl.edu	37	chr19	54742958	54742958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccactgtgtaatccttggcGtgtgaggctggggatggtgg	17	7	0	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	19	54742958	54742958	G	A	SNP	LILRA6	ENST00000245621	human	ensembl	69_37n	-1	known	silent	c.1266	p.H422	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	99	0	0	80	37	31.36	-	-	-	A	54742958	G	A	54742958	2	1	214	1	0	0	0	0	0	0	0	1	8844	1136	40	1		1	LILRA6	19	54742958	Silent	SNP	G	TCGA-A8-A09C-01A-11W-A019-09	1130143	54742958	4386025	27	13148										
ZNF460	0	genome.wustl.edu	37	chr19	57802916	57802916	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccatactggggagaggccctTtaagtgccttgagtgtggga	15	8	0	2			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	19	57802916	57802916	T	G	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.1007	p.F336C	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	138	0	0	118	33	21.85	-	-	-	G	57802916	T	G	57802916	3	3	214	1	0	0	0	0	1	0	0	0	18020	1841	64	5	1017	5	ZNF460	19	57802916	Missense_Mutation	SNP	T	TCGA-A8-A09C-01A-11W-A019-09	3059958	57802916	1326067	28	13149										
NEFH	0	genome.wustl.edu	37	chr22	29879499	29879500	+	Frame_Shift_Ins	INS	-	-	GG													0	0	1	0	0	0	1	1	0	gcactgaaaagcaccaaggaINSctcactggagaggcagcgct							TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	22	29879499	29879500	-	GG	INS	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	frame_shift_ins	c.1019_1020	p.D340fs	1.000:0.996	pfam_F	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	47	0	0	28	4	12.5	-	-	-	GG	29879500	-	GG	29879499	7	5	214	1	0	1	1	0	0	0	0	0	10386	275	10	0	1025	0	NEFH	22	29879499	Frame_Shift_Ins	INS	-	TCGA-A8-A09C-01A-11W-A019-09		29879499	21425067	29	13150										
CNGA2	0	genome.wustl.edu	37	chrX	150912604	150912604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagctaatatccgcagcctGggctactcagatctcttctg	8	13	3	1			TCGA-A8-A09C-01A-11W-A019-09	TCGA-A8-A09C-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b56cf2cb-bb2a-46b6-b3b4-84dd8b364984	ca018838-491c-495f-bdd9-098feb0f24f3	X	150912604	150912604	G	A	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	silent	c.1629	p.L543	0.999	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	324	0	0	149	90	37.66	-	-	-	A	150912604	G	A	150912604	2	1	214	1	0	0	0	0	0	0	0	1	3627	1335	47	4		4	CNGA2	23	150912604	Silent	SNP	G	TCGA-A8-A09C-01A-11W-A019-09		150912604	4357956	30	13151										
CSMD2	0	genome.wustl.edu	37	chr1	34046410	34046410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gtgatcagatgaccaacgcaGgtacacagagttgcttgagc	12	9	1	5			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	34046410	34046410	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.7330	p.L2444	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	81	0	0	70	8	10.26	-	-	-	A	34046410	G	A	34046410	2	1	215	1	0	0	0	0	0	0	0	1	3977	991	35	4		4	CSMD2	1	34046410	Silent	SNP	G	TCGA-A8-A09D-01A-11W-A019-09		34046410	215204211	1	13152										
TARS2	0	genome.wustl.edu	37	chr1	150470165	150470165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ccagctcccagagtgacgatTctaccaggcatatcacagat	8	13	2	3			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	150470165	150470165	T	C	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.1180	p.S394P	0.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	128	0	0	140	49	25.79	-	-	-	C	150470165	T	C	150470165	3	2	215	1	0	0	0	0	1	0	0	0	15652	1783	62	5	1218	5	TARS2	1	150470165	Missense_Mutation	SNP	T	TCGA-A8-A09D-01A-11W-A019-09	116423755	150470165	98780456	2	13153										
TROVE2	0	genome.wustl.edu	37	chr1	193051360	193051360	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tcttatgtagttgctttttcCgatgaaatggtaccatgtcc	8	8	1	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	193051360	193051360	C	T	SNP	TROVE2	ENST00000367441	human	ensembl	69_37n	1	known	silent	c.1248	p.S416	0.164	NULL	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747	131	0	0	98	28	22.22	-	-	-	T	193051360	C	T	193051360	2	4	215	1	0	0	0	0	0	0	0	1	16672	639	23	1		1	TROVE2	1	193051360	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	42581195	193051360	56199261	3	13154										
GNPAT	0	genome.wustl.edu	37	chr1	231403652	231403652	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ggtttctcatttggcctggtAtgtaggtaggacatatgtgt	13	5	1	0			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	231403652	231403652	A	G	SNP	GNPAT	ENST00000492459	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	GNPAT	HGNC	ENSG00000116906	64	0	0	64	22	25.58	-	-	-	G	231403652	A	G	231403652	1	3	215	0	1	0	0	0	0	0	0	0	6593	464	16	5		5	GNPAT	1	231403652	RNA	SNP	A	TCGA-A8-A09D-01A-11W-A019-09	38352292	231403652	17846969	4	13155										
NID1	0	genome.wustl.edu	37	chr1	236189206	236189206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	atccccttacccctcacaggCccaatggagttgctgagagc	9	15	1	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	236189206	236189206	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	silent	c.1974	p.G658	0.965	superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	188	0	0	159	45	22.06	-	-	-	T	236189206	C	T	236189206	2	4	215	1	0	0	0	0	0	0	0	1	10486	726	26	4		4	NID1	1	236189206	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	4785554	236189206	13061415	5	13156										
OR2T34	0	genome.wustl.edu	37	chr1	248737984	248737984	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aggagggcagcatgcttgctCtcagcaaagagtcccgtgag	14	10	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	1	248737984	248737984	C	T	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	silent	c.75	p.E25	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	402	0	0	252	79	23.87	-	-	-	T	248737984	C	T	248737984	2	4	215	1	0	0	0	0	0	0	0	1	11098	912	32	2		2	OR2T34	1	248737984	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	12548778	248737984	512637	6	13157										
MEIS1	0	genome.wustl.edu	37	chr2	66798466	66798467	+	Frame_Shift_Ins	INS	-	-	C													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gttatacccaaccccagatgINScccccccatcctgctcagct							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	2	66798466	66798467	-	C	INS	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	frame_shift_ins	c.1203_1204	p.H403fs	1.000:1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	29	0	0	24	3	11.11	-	-	-	C	66798467	-	C	66798466	7	5	215	1	0	1	1	0	0	0	0	0	9538	1334	46	0		0	MEIS1	2	66798466	Frame_Shift_Ins	INS	-	TCGA-A8-A09D-01A-11W-A019-09		66798466	176400907	7	13158										
CPS1	0	genome.wustl.edu	37	chr2	211471494	211471494	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tcctgcccagacactctccaAtgccgagtttcagatgttga	8	13	2	3			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	2	211471494	211471494	A	T	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.2039	p.N680I	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	99	0	0	115	19	14.18	-	-	-	T	211471494	A	T	211471494	3	4	215	1	0	0	0	0	1	0	0	0	3853	101	4	5	2113	5	CPS1	2	211471494	Missense_Mutation	SNP	A	TCGA-A8-A09D-01A-11W-A019-09	144673028	211471494	31727879	8	13159										
CRYBA2	0	genome.wustl.edu	37	chr2	219856885	219856886	+	Frame_Shift_Ins	INS	-	-	A													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gtggctgctgctgccactccINSaggcgctccagcgaggatag							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	2	219856885	219856886	-	A	INS	CRYBA2	ENST00000295728	human	ensembl	69_37n	-1	known	frame_shift_ins	c.242_241	p.W81fs	1.000:1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA2	HGNC	ENSG00000163499	16	0	0	6	4	40	-	-	-	A	219856886	-	A	219856885	7	5	215	1	0	1	1	0	0	0	0	0	3938	595	21	0	363	0	CRYBA2	2	219856885	Frame_Shift_Ins	INS	-	TCGA-A8-A09D-01A-11W-A019-09	8385391	219856885	23342488	9	13160										
ANKRD28	0	genome.wustl.edu	37	chr3	15753674	15753674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aagaagttttctgcagcaatCtgaaaagccgcttaaggctg	10	8	2	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	3	15753674	15753674	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1255	p.D419N	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	23	0	0	16	15	48.39	-	-	-	T	15753674	C	T	15753674	3	4	215	1	0	0	0	0	1	0	0	0	656	913	32	2	2077	2	ANKRD28	3	15753674	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		15753674	182268756	10	13161										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	162	0	0	151	61	28.77	-	-	-	G	178952085	A	G	178952085	3	3	215	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A09D-01A-11W-A019-09	163198411	178952085	19070345	11	13162										
RFC4	0	genome.wustl.edu	37	chr3	186507944	186507944	+	Frame_Shift_Del	DEL	G	G	-													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tacttacggcaagtttttctGtgataatagacttctgttta							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	3	186507944	186507944	G	-	DEL	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	frame_shift_del	c.983	p.T328fs	1.000	pfam_Rep_factorC_C_dom,superfamily_DNA_pol3_clamp-load_cplx_C	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	201	0	0	111	19	14.29	-	-	-	-	186507944	G	-	186507944	7	5	215	1	0	1	0	1	0	0	0	0	13330	1377	48	0	116	0	RFC4	3	186507944	Frame_Shift_Del	DEL	G	TCGA-A8-A09D-01A-11W-A019-09	7555859	186507944	11514486	12	13163										
ZDHHC19	0	genome.wustl.edu	37	chr3	195937533	195937533	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aagttgagtgaaacaagactGaagaaggtaaggacaaagag	13	3	0	6			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	3	195937533	195937533	G	A	SNP	ZDHHC19	ENST00000296326	human	ensembl	69_37n	-1	known	silent	c.222	p.F74	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958	21	0	0	25	10	28.57	-	-	-	A	195937533	G	A	195937533	2	1	215	1	0	0	0	0	0	0	0	1	17705	1281	45	2		2	ZDHHC19	3	195937533	Silent	SNP	G	TCGA-A8-A09D-01A-11W-A019-09	9429589	195937533	2084897	13	13164										
PIK3R1	0	genome.wustl.edu	37	chr5	67589269	67589269	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ctagctcagtataatcccaaAttggatgtgaaattacttta	6	7	1	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	5	67589269	67589269	A	G	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	silent	c.1257	p.K419	0.839	pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	116	0	0	77	22	22.22	-	-	-	G	67589269	A	G	67589269	2	3	215	1	0	0	0	0	0	0	0	1	11992	98	4	5		5	PIK3R1	5	67589269	Silent	SNP	A	TCGA-A8-A09D-01A-11W-A019-09		67589269	113325991	14	13165										
AGGF1	0	genome.wustl.edu	37	chr5	76348570	76348570	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ttgaccatgacttacaaagtTatgtccttgtggatcaaggc	9	8	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	5	76348570	76348570	T	A	SNP	AGGF1	ENST00000312916	human	ensembl	69_37n	1	known	missense	c.1405	p.Y469N	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252	35	0	0	40	27	39.71	-	-	-	A	76348570	T	A	76348570	3	1	215	1	0	0	0	0	1	0	0	0	382	1754	61	5	1439	5	AGGF1	5	76348570	Missense_Mutation	SNP	T	TCGA-A8-A09D-01A-11W-A019-09	8759301	76348570	104566690	15	13166										
BEND6	0	genome.wustl.edu	37	chr6	56879947	56879947	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ttagtgttaccacaagcagtCacccagtttgaagaattggt	9	8	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	6	56879947	56879947	C	T	SNP	BEND6	ENST00000370745	human	ensembl	69_37n	1	known	missense	c.379	p.H127Y	0.964	NULL	NULL	-	no_errors	BEND6	HGNC	ENSG00000151917	138	0	0	82	20	19.61	-	-	-	T	56879947	C	T	56879947	3	4	215	1	0	0	0	0	1	0	0	0	1406	813	29	2	325	2	BEND6	6	56879947	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		56879947	114235120	16	13167										
USP45	0	genome.wustl.edu	37	chr6	99887726	99887726	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tttactttacgaagactcaaGccagccttaaaaagaccaaa	5	10	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	6	99887726	99887726	G	C	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	silent	c.2079	p.G693	0.988	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	106	0	0	76	34	30.91	-	-	-	C	99887726	G	C	99887726	2	2	215	1	0	0	0	0	0	0	0	1	17173	958	34	4		4	USP45	6	99887726	Silent	SNP	G	TCGA-A8-A09D-01A-11W-A019-09	43007779	99887726	71227341	17	13168										
AP1S1	0	genome.wustl.edu	37	chr7	100799964	100799965	+	Frame_Shift_Ins	INS	-	-	CA													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	acaaggaacggaagaagatgINSgtgcgcgagctcatgcaggt							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	7	100799964	100799965	-	CA	INS	AP1S1	ENST00000337619	human	ensembl	69_37n	1	known	frame_shift_ins	c.93_94	p.V31fs	1.000:1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367	38	0	0	34	16	32	-	-	-	CA	100799965	-	CA	100799964	7	5	215	1	0	1	1	0	0	0	0	0	737	1348	47	0	99	0	AP1S1	7	100799964	Frame_Shift_Ins	INS	-	TCGA-A8-A09D-01A-11W-A019-09		100799964	58338699	18	13169										
TSPAN33	0	genome.wustl.edu	37	chr7	128807705	128807706	+	Frame_Shift_Del	DEL	CA	CA	-													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ccagcagcaccgggctgaccCatggtactgagaatccatcc							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	7	128807705	128807706	CA	-	DEL	TSPAN33	ENST00000289407	human	ensembl	69_37n	1	known	frame_shift_del	c.842_843	p.P281fs	0.994:0.443	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN33	HGNC	ENSG00000158457	29	0	0	27	15	34.88	-	-	-	-	128807706	CA	-	128807705	7	5	215	1	0	1	0	1	0	0	0	0	16744	594	21	0	872	0	TSPAN33	7	128807705	Frame_Shift_Del	DEL	CA	TCGA-A8-A09D-01A-11W-A019-09	28007741	128807705	30330958	19	13170										
UBR5	0	genome.wustl.edu	37	chr8	103309809	103309809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	attcccatgaatacatcttcCtctttttcacttgaggatat	4	10	3	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	8	103309809	103309809	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.3450	p.E1150	0.944	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	111	0	0	32	228	87.69	-	-	-	T	103309809	C	T	103309809	2	4	215	1	0	0	0	0	0	0	0	1	17002	680	24	4		4	UBR5	8	103309809	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		103309809	43054213	20	13171										
NOL8	0	genome.wustl.edu	37	chr9	95077771	95077771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	caataatttcatctgtatctCctgagtcatactcacgatca	4	11	6	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	9	95077771	95077771	C	T	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	missense	c.1136	p.G379E	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	118	0	0	105	20	16	-	-	-	T	95077771	C	T	95077771	3	4	215	1	0	0	0	0	1	0	0	0	10599	855	30	2	2411	2	NOL8	9	95077771	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		95077771	46135660	21	13172										
MUC5B	0	genome.wustl.edu	37	chr11	1271132	1271132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	cgggaccctcccagaacagaCcaccacacccgtggccacca	8	20	0	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	11	1271132	1271132	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.13031	p.T4344I	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	42	0	0	34	14	29.17	-	-	-	T	1271132	C	T	1271132	3	4	215	1	0	0	0	0	1	0	0	0	10051	507	18	4	13153	4	MUC5B	11	1271132	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		1271132	133735384	22	13173										
ANO5	0	genome.wustl.edu	37	chr11	22215054	22215054	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	cgaagatgggcgacccggatCtcctggaagtgttggcggag	17	9	1	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	11	22215054	22215054	C	T	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.16	p.L6F	0.439	NULL	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	16	0	0	8	6	42.86	-	-	-	T	22215054	C	T	22215054	3	4	215	1	0	0	0	0	1	0	0	0	699	913	32	2	18	2	ANO5	11	22215054	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	20943922	22215054	112791462	23	13174										
ETNK1	0	genome.wustl.edu	37	chr12	22797164	22797164	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gtttatcatcgttgactcttTgcaaaggaaaaactacaaga	7	7	2	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	12	22797164	22797164	T	A	SNP	ETNK1	ENST00000335148	human	ensembl	69_37n	1	known	missense	c.703	p.C235S	0.052	superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	-	no_errors	ETNK1	HGNC	ENSG00000139163	119	0	0	46	25	35.21	-	-	-	A	22797164	T	A	22797164	3	1	215	1	0	0	0	0	1	0	0	0	5310	1812	63	5	713	5	ETNK1	12	22797164	Missense_Mutation	SNP	T	TCGA-A8-A09D-01A-11W-A019-09		22797164	111054731	24	13175										
GMPR2	0	genome.wustl.edu	37	chr14	24702445	24702445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ccctcagattcatcgctaccCcgaggctaagcgccatgcct	8	17	2	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	14	24702445	24702445	C	T	SNP	GMPR2	ENST00000420554	human	ensembl	69_37n	1	known	missense	c.40	p.P14S	0.000	NULL	pfam_IMP_DH_GMPRt,pfam_FMN-dep_DH,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR2	HGNC	ENSG00000100938	339	0	0	513	83	13.86	-	-	-	T	24702445	C	T	24702445	3	4	215	1	0	0	0	0	1	0	0	0	6549	623	22	4	42	4	GMPR2	14	24702445	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		24702445	82647095	25	13176										
C14orf39	0	genome.wustl.edu	37	chr14	60938269	60938269	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	atataacaaaaatattaataCctcgaaatttcataaaaatt	1	5	1	0			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	14	60938269	60938269	C	T	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	splice_site	c.511+1	e5+1	1.000	-	-	-	no_errors	C14orf39	HGNC	ENSG00000179008	134	0	0	242	61	20.07	-	-	-	T	60938269	C	T	60938269	5	4	215	1	0	0	0	0	0	0	1	0	1784	521	18	4	1303	4	C14orf39	14	60938269	Splice_Site	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	36235824	60938269	46411271	26	13177										
RPS6KL1	0	genome.wustl.edu	37	chr14	75377983	75377984	+	Frame_Shift_Ins	INS	-	-	G													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	caggtgcaggaagatggagtINScctcgctcacaaagtacctg							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	14	75377983	75377984	-	G	INS	RPS6KL1	ENST00000358328	human	ensembl	69_37n	-1	known	frame_shift_ins	c.632_631	p.D211fs	1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208	32	0	0	24	128	84.21	-	-	-	G	75377984	-	G	75377983	7	5	215	1	0	1	1	0	0	0	0	0	13745	1667	58	0	1114	0	RPS6KL1	14	75377983	Frame_Shift_Ins	INS	-	TCGA-A8-A09D-01A-11W-A019-09	14439714	75377983	31971557	27	13178										
SLC12A6	0	genome.wustl.edu	37	chr15	34628702	34628702	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gtggccccagacatctcactCataggctcactccggcttgt	9	15	3	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	15	34628702	34628702	C	T	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.153	p.M51I	0.393	NULL	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	55	0	0	48	8	14.29	-	-	-	T	34628702	C	T	34628702	3	4	215	1	0	0	0	0	1	0	0	0	14476	826	29	2	3494	2	SLC12A6	15	34628702	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		34628702	67902690	28	13179										
STAC2	0	genome.wustl.edu	37	chr17	37369272	37369272	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ttctccttgaggctcatgtaAccctgttccttgttcccgga	8	13	2	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	17	37369272	37369272	A	C	SNP	STAC2	ENST00000333461	human	ensembl	69_37n	-1	known	silent	c.1107	p.G369	0.770	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC2	HGNC	ENSG00000141750	33	0	0	3	9	75	-	-	-	C	37369272	A	C	37369272	2	2	215	1	0	0	0	0	0	0	0	1	15331	30	2	5		5	STAC2	17	37369272	Silent	SNP	A	TCGA-A8-A09D-01A-11W-A019-09		37369272	43825938	29	13180										
FTSJ3	0	genome.wustl.edu	37	chr17	61897442	61897442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tggtgtcctcccattaccttCgcagctgtgccactttctct	7	15	1	0			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	17	61897442	61897442	C	T	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	missense	c.2348	p.R783Q	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	256	0	0	307	66	17.69	-	-	-	T	61897442	C	T	61897442	3	4	215	1	0	0	0	0	1	0	0	0	6138	884	31	1	203	1	FTSJ3	17	61897442	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	24528170	61897442	19297768	30	13181										
OTOP3	0	genome.wustl.edu	37	chr17	72937790	72937790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	gtgacgtgtggatcctgctgGccacgctgaaggtcctctcc	13	13	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	17	72937790	72937790	G	A	SNP	OTOP3	ENST00000328801	human	ensembl	69_37n	1	known	missense	c.376	p.A126T	0.993	NULL	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938	56	0	0	40	42	51.22	-	-	-	A	72937790	G	A	72937790	3	1	215	1	0	0	0	0	1	0	0	0	11380	1203	42	4	382	4	OTOP3	17	72937790	Missense_Mutation	SNP	G	TCGA-A8-A09D-01A-11W-A019-09	11040348	72937790	8257420	31	13182										
PHLPP1	0	genome.wustl.edu	37	chr18	60642791	60642794	+	Frame_Shift_Del	DEL	GATC	GATC	-													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aaagccgctgcctctgtccaGatcttacatcatgagctgtg							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	GATC	GATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	18	60642791	60642794	GATC	-	DEL	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	frame_shift_del	c.3917_3920	p.R1306fs	0.853:0.798:0.886:0.840	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	230	0	0	136	167	53.53	-	-	-	-	60642794	GATC	-	60642791	7	5	215	1	0	1	0	1	0	0	0	0	11928	942	33	0	3979	0	PHLPP1	18	60642791	Frame_Shift_Del	DEL	GATC	TCGA-A8-A09D-01A-11W-A019-09		60642791	17434457	32	13183	156	2								
PHLPP1	0	genome.wustl.edu	37	chr18	60642800	60642801	+	Frame_Shift_Ins	INS	-	-	A													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	cctctgtccagatcttacatINScatgagctgtgaagaagagc							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	18	60642800	60642801	-	A	INS	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	frame_shift_ins	c.3926_3927	p.M1310fs	0.971:0.989	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	231	0	0	146	152	51.01	-	-	-	A	60642801	-	A	60642800	7	5	215	1	0	1	1	0	0	0	0	0	11928	1435	50	0	3988	0	PHLPP1	18	60642800	Frame_Shift_Ins	INS	-	TCGA-A8-A09D-01A-11W-A019-09	9	60642800	17434448	33	13184	156	2								
MUC16	0	genome.wustl.edu	37	chr19	9090876	9090876	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ctggctctggcctcgggcacCccaggagacagaggggaggt	17	12	1	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	9090876	9090876	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.939	p.G313	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	308	0	0	232	70	23.18	-	-	-	A	9090876	C	A	9090876	2	1	215	1	0	0	0	0	0	0	0	1	10045	610	22	4		4	MUC16	19	9090876	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		9090876	50038107	34	13185										
ZNF561	0	genome.wustl.edu	37	chr19	9721093	9721093	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	caaagggcttttctccactaTgagttttcaaatgtttacta	6	8	2	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	9721093	9721093	T	G	SNP	ZNF561	ENST00000302851	human	ensembl	69_37n	-1	known	missense	c.1244	p.H415P	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF561	HGNC	ENSG00000171469	455	1	0.22	468	144	23.49	-	-	-	G	9721093	T	G	9721093	3	3	215	1	0	0	0	0	1	0	0	0	18088	1464	51	5	220	5	ZNF561	19	9721093	Missense_Mutation	SNP	T	TCGA-A8-A09D-01A-11W-A019-09	630217	9721093	49407890	35	13186										
ILF3	0	genome.wustl.edu	37	chr19	10781784	10781784	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	cgggcgctcaaagctgtgtcCgactggatagacgagcagga	15	10	1	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	10781784	10781784	C	T	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	silent	c.138	p.S46	0.060	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	42	0	0	58	7	10.61	-	-	-	T	10781784	C	T	10781784	2	4	215	1	0	0	0	0	0	0	0	1	7766	639	23	1		1	ILF3	19	10781784	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	1060691	10781784	48347199	36	13187										
ZNF536	0	genome.wustl.edu	37	chr19	31040294	31040294	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aagccggagcgggggccccaGagcctggacaagccgatgaa	16	12	0	2			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	31040294	31040294	G	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.3768	p.Q1256H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	11	0	0	17	9	34.62	-	-	-	T	31040294	G	T	31040294	3	4	215	1	0	0	0	0	1	0	0	0	18070	933	33	2	3778	2	ZNF536	19	31040294	Missense_Mutation	SNP	G	TCGA-A8-A09D-01A-11W-A019-09	20258510	31040294	28088689	37	13188										
CEACAM5	0	genome.wustl.edu	37	chr19	42213623	42213623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	acttctaaccttctggaaccCgcccaccactgccaagctca	5	18	3	0			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	42213623	42213623	C	T	SNP	CEACAM5	ENST00000221992	human	ensembl	69_37n	1	known	missense	c.89	p.P30L	0.004	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM5	HGNC	ENSG00000105388	444	1	0.22	293	96	24.68	-	-	-	T	42213623	C	T	42213623	3	4	215	1	0	0	0	0	1	0	0	0	3224	652	23	1	95	1	CEACAM5	19	42213623	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	11173329	42213623	16915360	38	13189										
ZNF576	0	genome.wustl.edu	37	chr19	44103077	44103077	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	aagcgggagcacccagcggaCttcgtggcccagaagctgca	14	13	0	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	19	44103077	44103077	C	G	SNP	ZNF576	ENST00000336564	human	ensembl	69_37n	1	known	missense	c.180	p.D60E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF576	HGNC	ENSG00000124444	148	0	0	60	13	17.81	-	-	-	G	44103077	C	G	44103077	3	3	215	1	0	0	0	0	1	0	0	0	18104	564	20	4	186	4	ZNF576	19	44103077	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	1889454	44103077	15025906	39	13190										
BFSP1	0	genome.wustl.edu	37	chr20	17475142	17475142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tctttctcctgcagacccacCtgcccattctctaaaggggg	8	15	3	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	20	17475142	17475142	C	A	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	missense	c.1575	p.Q525H	0.002	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	76	0	0	66	17	20.48	-	-	-	A	17475142	C	A	17475142	3	1	215	1	0	0	0	0	1	0	0	0	1420	680	24	4	426	4	BFSP1	20	17475142	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		17475142	45550378	40	13191										
KRTAP13-3	0	genome.wustl.edu	37	chr21	31798069	31798069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	cagcaggtctcctgacagccCctatagagagaggaacccag	11	13	1	3			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	21	31798069	31798069	C	T	SNP	KRTAP13-3	ENST00000390690	human	ensembl	69_37n	-1	known	silent	c.162	p.R54	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432	99	0	0	66	238	78.03	-	-	-	T	31798069	C	T	31798069	2	4	215	1	0	0	0	0	0	0	0	1	8577	622	22	4		4	KRTAP13-3	21	31798069	Silent	SNP	C	TCGA-A8-A09D-01A-11W-A019-09		31798069	16331826	41	13192										
ITSN1	0	genome.wustl.edu	37	chr21	35255938	35255938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	tccacatctcccacattgacCgcgtctatactctccgagca	5	17	3	1			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	21	35255938	35255938	C	T	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.4639	p.R1547C	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	86	0	0	90	40	30.77	-	-	-	T	35255938	C	T	35255938	3	4	215	1	0	0	0	0	1	0	0	0	7980	652	23	1	4783	1	ITSN1	21	35255938	Missense_Mutation	SNP	C	TCGA-A8-A09D-01A-11W-A019-09	3457869	35255938	12873957	42	13193										
PPM1F	0	genome.wustl.edu	37	chr22	22279937	22279940	+	Frame_Shift_Del	DEL	CTCA	CTCA	-													0.142857142857143	6	0.351437786735272	1.73644703919933	0	1.91009174311927	0.00466200466200466	0.0844340844340844	0	ttgggtcggcctctttggctCtcaccgatggctctggagac							TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	CTCA	CTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0ef396f-4e9f-40ba-a09c-0a96832cabf9	4cc17aa7-57b9-4618-bd04-42378c11d27b	22	22279937	22279940	CTCA	-	DEL	PPM1F	ENST00000397495	human	ensembl	69_37n	-1	novel	frame_shift_del	c.990_987	p.E330fs	0.996:1.000:0.997:1.000	pfam_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	15	0	0	7	30	81.08	-	-	-	-	22279940	CTCA	-	22279937	7	5	215	1	0	1	0	1	0	0	0	0	12416	928	32	0		0	PPM1F	22	22279937	Frame_Shift_Del	DEL	CTCA	TCGA-A8-A09D-01A-11W-A019-09		22279937	29024629	43	13194										
PIGV	0	genome.wustl.edu	37	chr1	27124150	27124150	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cgctgttgagatccttaaagActgtgccttggaagcctctt	10	10	1	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	1	27124150	27124150	A	T	SNP	PIGV	ENST00000078527	human	ensembl	69_37n	1	known	missense	c.1297	p.T433S	0.007	pfam_GPI_Mannosyltransferase_2-like	pfam_GPI_Mannosyltransferase_2-like	-	no_errors	PIGV	HGNC	ENSG00000060642	55	0	0	56	32	36.36	-	-	-	T	27124150	A	T	27124150	3	4	216	1	0	0	0	0	1	0	0	0	11975	275	10	5	1307	5	PIGV	1	27124150	Missense_Mutation	SNP	A	TCGA-A8-A09E-01A-11W-A019-09		27124150	222126471	1	13195										
VCAM1	0	genome.wustl.edu	37	chr1	101190191	101190191	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ccctttcagtatcacccaagAatacagttatttctgtgaat	5	10	3	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	1	101190191	101190191	A	T	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.673	p.N225Y	0.980	pfscan_Ig-like,prints_VCAM-1	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	108	0	0	91	12	11.65	-	-	-	T	101190191	A	T	101190191	3	4	216	1	0	0	0	0	1	0	0	0	17234	246	9	5	687	5	VCAM1	1	101190191	Missense_Mutation	SNP	A	TCGA-A8-A09E-01A-11W-A019-09	74066041	101190191	148060430	2	13196										
BCL9	0	genome.wustl.edu	37	chr1	147092581	147092581	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cgatgcaccaagtccagtcaCcaatgctgggctcgccctcg	10	16	1	0			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	1	147092581	147092581	C	G	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.2620	p.P874A	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	106	0	0	195	27	12.16	-	-	-	G	147092581	C	G	147092581	3	3	216	1	0	0	0	0	1	0	0	0	1385	507	18	4	2638	4	BCL9	1	147092581	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	45902390	147092581	102158040	3	13197										
CEP350	0	genome.wustl.edu	37	chr1	180062453	180062453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	aggtgtcatctttgctgtcaCtcaggaaagactctcagtct	9	10	6	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	1	180062453	180062453	C	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.7213	p.L2405F	0.019	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	32	0	0	44	11	20	-	-	-	T	180062453	C	T	180062453	3	4	216	1	0	0	0	0	1	0	0	0	3283	565	20	4	7343	4	CEP350	1	180062453	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	32969872	180062453	69188168	4	13198										
TTN	0	genome.wustl.edu	37	chr2	179595715	179595715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	attttggacctcgaaagtatAttctccactatctttctttt	4	9	3	0			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	2	179595715	179595715	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.13945	p.Y4649H	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	318	0	0	175	168	48.98	-	-	-	G	179595715	A	G	179595715	3	3	216	1	0	0	0	0	1	0	0	0	16832	449	16	5	87064	5	TTN	2	179595715	Missense_Mutation	SNP	A	TCGA-A8-A09E-01A-11W-A019-09		179595715	63603658	5	13199										
OBSL1	0	genome.wustl.edu	37	chr2	220427290	220427292	+	In_Frame_Del	DEL	CAC	CAC	-													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tctccatccttggtccagcgCacctctgcccagggccggca							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	2	220427290	220427292	CAC	-	DEL	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	in_frame_del	c.2787_2785	p.V929in_frame_del	1.000:1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	13	0	0	10	5	33.33	-	-	-	-	220427292	CAC	-	220427290	7	5	216	1	0	1	0	1	0	0	0	0	10886	697	25	0	3111	0	OBSL1	2	220427290	In_Frame_Del	DEL	CAC	TCGA-A8-A09E-01A-11W-A019-09	40831575	220427290	22772083	6	13200										
MAP4	0	genome.wustl.edu	37	chr3	47894422	47894423	+	Frame_Shift_Ins	INS	-	-	G													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cggaacgtcagcctgtaggtINSctcaatctgcagtgacatgg							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	3	47894422	47894423	-	G	INS	MAP4	ENST00000395734	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3268_3267	p.T1089fs	1.000:1.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	14	0	0	14	18	56.25	-	-	-	G	47894423	-	G	47894422	7	5	216	1	0	1	1	0	0	0	0	0	9329	1667	58	0	143	0	MAP4	3	47894422	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09		47894422	150128008	7	13201										
PDE12	0	genome.wustl.edu	37	chr3	57542498	57542499	+	Frame_Shift_Del	DEL	CA	CA	-													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gctgtactaccgggaagaggCagtggctgaggacgtgctca							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	3	57542498	57542499	CA	-	DEL	PDE12	ENST00000311180	human	ensembl	69_37n	1	known	frame_shift_del	c.392_393	p.A131fs	1.000:0.955	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	11	0	0	13	9	40.91	-	-	-	-	57542499	CA	-	57542498	7	5	216	1	0	1	0	1	0	0	0	0	11705	710	25	0	394	0	PDE12	3	57542498	Frame_Shift_Del	DEL	CA	TCGA-A8-A09E-01A-11W-A019-09	9648076	57542498	140479932	8	13202										
LRBA	0	genome.wustl.edu	37	chr4	151392779	151392779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	acatggaattaggttacctgCtatcgtgttgagaaacatca	9	7	1	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	4	151392779	151392779	C	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.6697	p.A2233T	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	97	0	0	70	43	38.05	-	-	-	T	151392779	C	T	151392779	3	4	216	1	0	0	0	0	1	0	0	0	8997	797	28	4	1954	4	LRBA	4	151392779	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		151392779	39761497	9	13203										
KIAA0922	0	genome.wustl.edu	37	chr4	154553903	154553904	+	Frame_Shift_Ins	INS	-	-	G													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ggagacctgtggcccactccINSgccagtgtgtgtgacaagca							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	4	154553903	154553904	-	G	INS	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	frame_shift_ins	c.4241_4242	p.P1415fs	0.989:0.992	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	28	0	0	30	6	16.67	-	-	-	G	154553904	-	G	154553903	7	5	216	1	0	1	1	0	0	0	0	0	8253	652	23	0	4367	0	KIAA0922	4	154553903	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	3161124	154553903	36600373	10	13204										
DCHS2	0	genome.wustl.edu	37	chr4	155219117	155219117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cgtggttgtcctggctggaaTgccctggtctgtaactttta	12	9	1	0			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	4	155219117	155219117	T	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.4984	p.I1662F	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	106	1	0.93	27	79	74.53	-	-	-	A	155219117	T	A	155219117	3	1	216	1	0	0	0	0	1	0	0	0	4319	1464	51	5	3798	5	DCHS2	4	155219117	Missense_Mutation	SNP	T	TCGA-A8-A09E-01A-11W-A019-09	665214	155219117	35935159	11	13205										
SORBS2	0	genome.wustl.edu	37	chr4	186544746	186544747	+	Frame_Shift_Ins	INS	-	-	T													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ccctctaggtgaatgtagtcINSactgtggtcggacacaaccc							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	4	186544746	186544747	-	T	INS	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1825_1824	p.D608fs	1.000:0.761	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	45	0	0	45	36	44.44	-	-	-	T	186544747	-	T	186544746	7	5	216	1	0	1	1	0	0	0	0	0	15017	826	29	0	1513	0	SORBS2	4	186544746	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	31325629	186544746	4609530	12	13206										
CHSY3	0	genome.wustl.edu	37	chr5	129243904	129243904	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	aaaacttctgtatgggaggaCctggcatgatctttagccga	11	8	2	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	5	129243904	129243904	C	G	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	missense	c.937	p.P313A	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	53	0	0	24	12	33.33	-	-	-	G	129243904	C	G	129243904	3	3	216	1	0	0	0	0	1	0	0	0	3442	507	18	4	943	4	CHSY3	5	129243904	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		129243904	51671356	13	13207										
ZFP57	0	genome.wustl.edu	37	chr6	29640364	29640364	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cctcttctcctgggggtatgGatcctggggggagattgatc	15	9	2	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	6	29640364	29640364	G	A	SNP	ZFP57	ENST00000488757	human	ensembl	69_37n	-1	known	silent	c.1524	p.I508	0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	83	0	0	100	30	23.08	-	-	-	A	29640364	G	A	29640364	2	1	216	1	0	0	0	0	0	0	0	1	17747	1164	41	2		2	ZFP57	6	29640364	Silent	SNP	G	TCGA-A8-A09E-01A-11W-A019-09		29640364	141474703	14	13208										
COL11A2	0	genome.wustl.edu	37	chr6	33152074	33152075	+	Frame_Shift_Ins	INS	-	-	G													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gcctggaacctgtcggctgtINSgggggggacctggagatctg							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	6	33152074	33152075	-	G	INS	COL11A2	ENST00000341947	human	ensembl	69_37n	-1	known	frame_shift_ins	c.967_966	p.T322fs	0.999:0.989	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	14	0	0	16	3	15.79	-	-	-	G	33152075	-	G	33152074	7	5	216	1	0	1	1	0	0	0	0	0	3698	1696	59	0	4479	0	COL11A2	6	33152074	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	3511710	33152074	137962993	15	13209										
EPHB6	0	genome.wustl.edu	37	chr7	142568064	142568064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ggacacttggcagaaggaccGtgcccggcggcctcattttg	14	12	1	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	7	142568064	142568064	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	missense	c.2705	p.R902H	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	111	0	0	112	33	22.76	-	-	-	A	142568064	G	A	142568064	3	1	216	1	0	0	0	0	1	0	0	0	5215	1145	40	1	2759	1	EPHB6	7	142568064	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09		142568064	16570599	16	13210										
OR6B1	0	genome.wustl.edu	37	chr7	143701799	143701799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	aggaaagcagaaagcgttctCcacttgtgcctcccatcttg	9	12	2	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	7	143701799	143701799	C	T	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	missense	c.710	p.S237F	0.159	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	162	0	0	177	47	20.98	-	-	-	T	143701799	C	T	143701799	3	4	216	1	0	0	0	0	1	0	0	0	11260	855	30	2	712	2	OR6B1	7	143701799	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	1133735	143701799	15436864	17	13211										
ARHGEF5	0	genome.wustl.edu	37	chr7	144061486	144061486	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tgggacttctgagatgtgccCggctgccctctatggcttcc	12	13	2	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	7	144061486	144061486	C	A	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.1724	p.P575Q	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	35	0	0	34	5	12.82	-	-	-	A	144061486	C	A	144061486	3	1	216	1	0	0	0	0	1	0	0	0	911	652	23	3	1726	3	ARHGEF5	7	144061486	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	359687	144061486	15077177	18	13212										
UNC5D	0	genome.wustl.edu	37	chr8	35544126	35544126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tccagagtgtgaacatttgcGgatccgggagtgcacagcac	13	10	0	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	8	35544126	35544126	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.983	p.R328Q	0.973	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	26	0	0	32	12	27.27	-	-	-	A	35544126	G	A	35544126	3	1	216	1	0	0	0	0	1	0	0	0	17092	1116	39	1	1009	1	UNC5D	8	35544126	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09		35544126	110819896	19	13213										
ARFGEF1	0	genome.wustl.edu	37	chr8	68179153	68179153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	attcacatactgatccttacTccattcaaccatacacttca	1	14	3	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	8	68179153	68179153	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.1879	p.S627G	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	90	0	0	104	61	36.97	-	-	-	C	68179153	T	C	68179153	3	2	216	1	0	0	0	0	1	0	0	0	854	1551	54	5	3778	5	ARFGEF1	8	68179153	Missense_Mutation	SNP	T	TCGA-A8-A09E-01A-11W-A019-09	32635027	68179153	78184869	20	13214										
KCNK9	0	genome.wustl.edu	37	chr8	140631121	140631121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cgccccgatgcacagcgtccCcatgcaggagaagaagccca	11	16	0	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	8	140631121	140631121	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.505	p.G169R	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	48	0	0	41	34	45.33	-	-	-	T	140631121	C	T	140631121	3	4	216	1	0	0	0	0	1	0	0	0	8126	623	22	4	623	4	KCNK9	8	140631121	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	72451968	140631121	5732901	21	13215										
IKBKAP	0	genome.wustl.edu	37	chr9	111668755	111668755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	atcttgatcttcattattctCaaactggattctattgtaaa	4	7	5	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	9	111668755	111668755	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.1471	p.E491K	0.990	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	149	0	0	182	38	17.27	-	-	-	T	111668755	C	T	111668755	3	4	216	1	0	0	0	0	1	0	0	0	7664	835	29	2	2623	2	IKBKAP	9	111668755	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		111668755	29544676	22	13216										
UCK1	0	genome.wustl.edu	37	chr9	134400562	134400563	+	Frame_Shift_Ins	INS	-	-	T													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ggtgccatttgcagatgtcaINSccattcagaatgtcctggat							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	9	134400562	134400563	-	T	INS	UCK1	ENST00000372211	human	ensembl	69_37n	-1	known	frame_shift_ins	c.714_713	p.D239fs	0.058:0.998	NULL	pfam_PRK/URK,prints_Uridine_kinase	-	no_errors	UCK1	HGNC	ENSG00000130717	9	0	0	10	8	44.44	-	-	-	T	134400563	-	T	134400562	7	5	216	1	0	1	1	0	0	0	0	0	17020	172	6	0	138	0	UCK1	9	134400562	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	22731807	134400562	6812869	23	13217										
PTEN	0	genome.wustl.edu	37	chr10	89653840	89653840	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gaaagacttgaaggcgtataCaggaacaatattgatgatgt	11	4	0	4			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	10	89653840	89653840	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.138	p.Y46*	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	110	0	0	32	66	67.35	-	-	-	G	89653840	C	G	89653840	4	3	216	1	0	0	0	0	0	1	0	0	12818	489	17	4	144	4	PTEN	10	89653840	Nonsense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		89653840	45880907	24	13218										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105362404	105362404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cccgcggggaagctgatctcCgagtcctggaccttctggta	13	13	2	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	10	105362404	105362404	C	T	SNP	SH3PXD2A	ENST00000420222	human	ensembl	69_37n	-1	known	missense	c.2350	p.G784R	0.035	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH3PXD2A	HGNC	ENSG00000107957	59	0	0	23	18	43.9	-	-	-	T	105362404	C	T	105362404	3	4	216	1	0	0	0	0	1	0	0	0	14345	639	23	1	834	1	SH3PXD2A	10	105362404	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	15708564	105362404	30172343	25	13219										
SLC18A2	0	genome.wustl.edu	37	chr10	119012920	119012920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tgttttgcagaattggctatCcaattcccatatttgcggga	9	8	0	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	10	119012920	119012920	C	A	SNP	SLC18A2	ENST00000298472	human	ensembl	69_37n	1	known	missense	c.475	p.P159T	0.999	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	44	0	0	34	15	30.61	-	-	-	A	119012920	C	A	119012920	3	1	216	1	0	0	0	0	1	0	0	0	14515	855	30	2	485	2	SLC18A2	10	119012920	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	13650516	119012920	16521827	26	13220										
DCHS1	0	genome.wustl.edu	37	chr11	6646655	6646655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ttagcacataccacagcacgGgtcctgagtccacatcattc	7	14	1	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	6646655	6646655	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.6920	p.P2307L	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	56	0	0	32	5	13.51	-	-	-	A	6646655	G	A	6646655	3	1	216	1	0	0	0	0	1	0	0	0	4318	1232	43	4	2988	4	DCHS1	11	6646655	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09		6646655	128359861	27	13221										
DKK3	0	genome.wustl.edu	37	chr11	11986224	11986225	+	Frame_Shift_Ins	INS	-	-	A													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tcggcttgcacacatacaccINSaggctgtggctggggagaga							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	11986224	11986225	-	A	INS	DKK3	ENST00000326932	human	ensembl	69_37n	-1	known	frame_shift_ins	c.840_839	p.V281fs	0.998:1.000	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165	29	0	0	21	14	40	-	-	-	A	11986225	-	A	11986224	7	5	216	1	0	1	1	0	0	0	0	0	4582	581	21	0	216	0	DKK3	11	11986224	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	5339569	11986224	123020292	28	13222										
OR5T1	0	genome.wustl.edu	37	chr11	56043133	56043133	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	aaatgtcagggttgccttcaGatatggatctatacaagctt	9	7	3	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	56043133	56043133	G	T	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.19	p.D7Y	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	332	0	0	439	80	15.41	-	-	-	T	56043133	G	T	56043133	3	4	216	1	0	0	0	0	1	0	0	0	11254	942	33	2	21	2	OR5T1	11	56043133	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09	44056909	56043133	78963383	29	13223										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57076427	57076428	+	Frame_Shift_Del	DEL	CT	CT	-													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	agtcagtctgccccacgccaCtctctctggcctggctgtgg							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	57076427	57076428	CT	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	frame_shift_del	c.3758_3757	p.S1253fs	1.000:0.998	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	290	0	0	159	118	42.6	-	-	-	-	57076428	CT	-	57076427	7	5	216	1	0	1	0	1	0	0	0	0	16415	565	20	0	1455	0	TNKS1BP1	11	57076427	Frame_Shift_Del	DEL	CT	TCGA-A8-A09E-01A-11W-A019-09	1033294	57076427	77930089	30	13224										
PPP2R5B	0	genome.wustl.edu	37	chr11	64700359	64700359	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	caagtctccaaggagcactgGaaccagtgagtgccaggcca	12	12	1	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	64700359	64700359	G	A	SNP	PPP2R5B	ENST00000164133	human	ensembl	69_37n	1	known	nonsense	c.1239	p.W413*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	25	0	0	181	72	28.46	-	-	-	A	64700359	G	A	64700359	4	1	216	1	0	0	0	0	0	1	0	0	12470	1183	41	2	1281	2	PPP2R5B	11	64700359	Nonsense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09	7623932	64700359	70306157	31	13225										
OR8B8	0	genome.wustl.edu	37	chr11	124310466	124310466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	cacatgtagtggttgacaagGttattggcacagaaggtcac	12	7	1	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	11	124310466	124310466	G	T	SNP	OR8B8	ENST00000328064	human	ensembl	69_37n	-1	putative	missense	c.516	p.N172K	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125	179	0	0	37	44	54.32	-	-	-	T	124310466	G	T	124310466	3	4	216	1	0	0	0	0	1	0	0	0	11303	1252	44	4	422	4	OR8B8	11	124310466	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09	59610107	124310466	10696050	32	13226										
KCNA6	0	genome.wustl.edu	37	chr12	4919672	4919672	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	aagccgctgccctcccagccCttccagcgccaggtgtggct	11	18	0	0			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	12	4919672	4919672	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	silent	c.465	p.P155	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	52	0	0	25	8	24.24	-	-	-	T	4919672	C	T	4919672	2	4	216	1	0	0	0	0	0	0	0	1	8061	668	24	4		4	KCNA6	12	4919672	Silent	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		4919672	128932223	33	13227										
PEX5	0	genome.wustl.edu	37	chr12	7343051	7343051	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ctcgccgggcacttcacccaGgacaaggcccttcggcagga	12	16	1	0			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	12	7343051	7343051	G	A	SNP	PEX5	ENST00000434354	human	ensembl	69_37n	1	known	silent	c.78	p.Q26	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197	16	0	0	4	9	69.23	-	-	-	A	7343051	G	A	7343051	2	1	216	1	0	0	0	0	0	0	0	1	11822	991	35	4		4	PEX5	12	7343051	Silent	SNP	G	TCGA-A8-A09E-01A-11W-A019-09	2423379	7343051	126508844	34	13228										
PAWR	0	genome.wustl.edu	37	chr12	79990324	79990324	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	tcaattttcttttccagtgtGctacttgaaaccagagtacc	6	10	2	2			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	12	79990324	79990324	G	A	SNP	PAWR	ENST00000328827	human	ensembl	69_37n	-1	known	silent	c.798	p.S266	0.775	NULL	NULL	-	no_errors	PAWR	HGNC	ENSG00000177425	67	0	0	76	35	31.25	-	-	-	A	79990324	G	A	79990324	2	1	216	1	0	0	0	0	0	0	0	1	11550	1310	46	4		4	PAWR	12	79990324	Silent	SNP	G	TCGA-A8-A09E-01A-11W-A019-09	72647273	79990324	53861571	35	13229										
BRI3BP	0	genome.wustl.edu	37	chr12	125509844	125509845	+	Frame_Shift_Ins	INS	-	-	G													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gcttctactggcgaagcagtINScccagcggccccagcaaccc							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	12	125509844	125509845	-	G	INS	BRI3BP	ENST00000341446	human	ensembl	69_37n	1	known	frame_shift_ins	c.624_625	p.P208fs	0.982:0.979	NULL	NULL	-	no_errors	BRI3BP	HGNC	ENSG00000184992	17	0	0	12	5	29.41	-	-	-	G	125509845	-	G	125509844	7	5	216	1	0	1	1	0	0	0	0	0	1521	1664	58	0	634	0	BRI3BP	12	125509844	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	45519520	125509844	8342051	36	13230										
LMO7	0	genome.wustl.edu	37	chr13	76382190	76382190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	agaaagatgacatgctgacaCgtaagattcagtcctggaaa	10	7	1	5			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	13	76382190	76382190	C	T	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	missense	c.1927	p.R643C	0.999	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	51	0	0	40	54	57.45	-	-	-	T	76382190	C	T	76382190	3	4	216	1	0	0	0	0	1	0	0	0	8911	536	19	1	1969	1	LMO7	13	76382190	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09		76382190	38787688	37	13231										
TUBGCP5	0	genome.wustl.edu	37	chr15	22866766	22866766	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	agctaagaagaagctgcctgTtcatatcttagatggtctga	10	7	3	4			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	15	22866766	22866766	T	A	SNP	TUBGCP5	ENST00000561214	human	ensembl	69_37n	1	novel	nonsense	c.342	p.C114*	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TUBGCP5	HGNC	ENSG00000153575	15	0	0	22	9	29.03	-	-	-	A	22866766	T	A	22866766	4	1	216	1	0	0	0	0	0	1	0	0	16866	1725	60	5	2444	5	TUBGCP5	15	22866766	Nonsense_Mutation	SNP	T	TCGA-A8-A09E-01A-11W-A019-09		22866766	79664626	38	13232										
ALPK3	0	genome.wustl.edu	37	chr15	85382261	85382262	+	Frame_Shift_Ins	INS	-	-	A													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ggatgatacggagctggaccINSgctactgtggcttgccaaaa							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	15	85382261	85382262	-	A	INS	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	frame_shift_ins	c.961_962	p.R321fs	1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	13	0	0	12	16	57.14	-	-	-	A	85382262	-	A	85382261	7	5	216	1	0	1	1	0	0	0	0	0	546	652	23	0	975	0	ALPK3	15	85382261	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09	62515495	85382261	17149131	39	13233										
ARHGEF15	0	genome.wustl.edu	37	chr17	8224297	8224298	+	Frame_Shift_Ins	INS	-	-	C													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	ttcttcaggcacccccaatgINScccccccaccctaatgcagg							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	17	8224297	8224298	-	C	INS	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	frame_shift_ins	c.2512_2513	p.P841fs	0.000:0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	17	0	0	34	4	10.53	-	-	-	C	8224298	-	C	8224297	7	5	216	1	0	1	1	0	0	0	0	0	900	1319	46	0	2570	0	ARHGEF15	17	8224297	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09		8224297	72970913	40	13234										
DUS3L	0	genome.wustl.edu	37	chr19	5789306	5789307	+	Frame_Shift_Ins	INS	-	-	C													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gctgctgggaggggtgctagINStgcccggccctgcggggacc							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	19	5789306	5789307	-	C	INS	DUS3L	ENST00000309061	human	ensembl	69_37n	-1	known	frame_shift_ins	c.812_811	p.T271fs	0.000:0.000	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994	8	0	0	9	5	35.71	-	-	-	C	5789307	-	C	5789306	7	5	216	1	0	1	1	0	0	0	0	0	4842	1029	36	0	1184	0	DUS3L	19	5789306	Frame_Shift_Ins	INS	-	TCGA-A8-A09E-01A-11W-A019-09		5789306	53339677	41	13235										
DACT3	0	genome.wustl.edu	37	chr19	47151768	47151768	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	agtcatgaccttgagagaacCcgaacggaaacgcagtatct	10	10	2	3			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	19	47151768	47151768	C	A	SNP	DACT3	ENST00000391916	human	ensembl	69_37n	-1	known	missense	c.1861	p.G621C	0.999	NULL	NULL	-	no_errors	DACT3	HGNC	ENSG00000197380	199	1	0.5	250	61	19.61	-	-	-	A	47151768	C	A	47151768	3	1	216	1	0	0	0	0	1	0	0	0	4255	623	22	4	32	4	DACT3	19	47151768	Missense_Mutation	SNP	C	TCGA-A8-A09E-01A-11W-A019-09	41362462	47151768	11977215	42	13236										
FCAR	0	genome.wustl.edu	37	chr19	55399582	55399582	+	Frame_Shift_Del	DEL	C	C	-													0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	gacctcaatgtctcagggatCtacaggtgctacggttggta							TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	19	55399582	55399582	C	-	DEL	FCAR	ENST00000355524	human	ensembl	69_37n	1	known	frame_shift_del	c.570	p.Y191fs	0.012	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	24	0	0	47	39	44.83	-	-	-	-	55399582	C	-	55399582	7	5	216	1	0	1	0	1	0	0	0	0	5819	903	32	0	584	0	FCAR	19	55399582	Frame_Shift_Del	DEL	C	TCGA-A8-A09E-01A-11W-A019-09	8247814	55399582	3729401	43	13237										
CXorf22	0	genome.wustl.edu	37	chrX	35993847	35993847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0227272727272727	1	1	0.33986562150056	0	0.403590425531915	1	1	0	acatcctagtggtggcagttGtccagccagtaacacttgag	11	10	0	1			TCGA-A8-A09E-01A-11W-A019-09	TCGA-A8-A09E-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6465963-5ea6-44a5-96b0-dff0b0fae4c4	950408ef-e597-4d7c-852d-865fbc66f75d	X	35993847	35993847	G	A	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.2530	p.V844I	0.004	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	183	0	0	224	50	18.25	-	-	-	A	35993847	G	A	35993847	3	1	216	1	0	0	0	0	1	0	0	0	4133	1377	48	4	2588	4	CXorf22	23	35993847	Missense_Mutation	SNP	G	TCGA-A8-A09E-01A-11W-A019-09		35993847	119276713	44	13238										
MTOR	0	genome.wustl.edu	37	chr1	11307746	11307746	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttaaggattgtcatttggatCagcgagttcttgctattcct	9	7	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	11307746	11307746	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.1161	p.L387	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	194	0	0	72	47	39.5	-	-	-	T	11307746	C	T	11307746	2	4	217	1	0	0	0	0	0	0	0	1	10026	813	29	2		2	MTOR	1	11307746	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		11307746	237942875	1	13239										
FBXO6	0	genome.wustl.edu	37	chr1	11728894	11728894	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctggaaacgcaagtgcctgcGagagggcttcatcaccaagg	13	11	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	11728894	11728894	G	C	SNP	FBXO6	ENST00000376753	human	ensembl	69_37n	1	known	missense	c.179	p.R60P	0.030	superfamily_F-box_dom_cyclin-like	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO6	HGNC	ENSG00000116663	25	0	0	11	8	42.11	-	-	-	C	11728894	G	C	11728894	3	2	217	1	0	0	0	0	1	0	0	0	5805	1058	37	3	181	3	FBXO6	1	11728894	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	421148	11728894	237521727	2	13240										
SESN2	0	genome.wustl.edu	37	chr1	28601371	28601371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaccatggctactcgctgatCcagcggctttaccctgaggg	12	13	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	28601371	28601371	C	G	SNP	SESN2	ENST00000253063	human	ensembl	69_37n	1	known	missense	c.1056	p.I352M	1.000	pfam_PA26	pfam_PA26	-	no_errors	SESN2	HGNC	ENSG00000130766	132	0	0	143	46	24.34	-	-	-	G	28601371	C	G	28601371	3	3	217	1	0	0	0	0	1	0	0	0	14213	845	30	2	1086	2	SESN2	1	28601371	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	16872477	28601371	220649250	3	13241										
S100PBP	0	genome.wustl.edu	37	chr1	33292196	33292196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgcttgataaggacgagactGattcgtccaaagatactgaa	10	7	0	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	33292196	33292196	G	C	SNP	S100PBP	ENST00000373475	human	ensembl	69_37n	1	known	missense	c.496	p.D166H	0.998	NULL	NULL	-	no_errors	S100PBP	HGNC	ENSG00000116497	199	0	0	261	93	26.2	-	-	-	C	33292196	G	C	33292196	3	2	217	1	0	0	0	0	1	0	0	0	13877	1290	45	2	498	2	S100PBP	1	33292196	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	4690825	33292196	215958425	4	13242										
TRAPPC3	0	genome.wustl.edu	37	chr1	36603571	36603571	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgatgcccaagtacatcttGaacgccacctgtcaggggac	11	12	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	36603571	36603571	G	A	SNP	TRAPPC3	ENST00000373166	human	ensembl	69_37n	-1	known	silent	c.249	p.F83	1.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	76	0	0	49	17	25.76	-	-	-	A	36603571	G	A	36603571	2	1	217	1	0	0	0	0	0	0	0	1	16556	1281	45	2		2	TRAPPC3	1	36603571	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	3311375	36603571	212647050	5	13243										
FAAH	0	genome.wustl.edu	37	chr1	46872031	46872031	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	actgtgcctcccttgcccttCagagaagaggtgagcagggc	13	12	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	46872031	46872031	C	A	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	missense	c.942	p.F314L	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	26	0	0	15	8	34.78	-	-	-	A	46872031	C	A	46872031	3	1	217	1	0	0	0	0	1	0	0	0	5393	825	29	2	968	2	FAAH	1	46872031	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	10268460	46872031	202378590	6	13244										
TMEM48	0	genome.wustl.edu	37	chr1	54293790	54293790	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaatgagtgcatgagttgctGaggatgaatgatcttcccta	11	6	1	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	54293790	54293790	G	A	SNP	TMEM48	ENST00000371429	human	ensembl	69_37n	-1	known	nonsense	c.337	p.Q113*	0.999	pfam_Nucleoporin_prot_Ndc1/Nup	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	TMEM48	HGNC	ENSG00000058804	140	0	0	173	20	10.36	-	-	-	A	54293790	G	A	54293790	4	1	217	1	0	0	0	0	0	1	0	0	16267	1299	45	2	1747	2	TMEM48	1	54293790	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	7421759	54293790	194956831	7	13245										
TTC4	0	genome.wustl.edu	37	chr1	55194063	55194063	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaagccaacttgaaagaaaaGaaggagaggaatcagaatga	11	4	1	6			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	55194063	55194063	G	C	SNP	TTC4	ENST00000371281	human	ensembl	69_37n	1	known	missense	c.639	p.K213N	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725	90	0	0	108	31	22.14	-	-	-	C	55194063	G	C	55194063	3	2	217	1	0	0	0	0	1	0	0	0	16807	933	33	2	661	2	TTC4	1	55194063	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	900273	55194063	194056558	8	13246										
INADL	0	genome.wustl.edu	37	chr1	62321852	62321852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cctcacttgctgaagctgtgGaaatattgaaagctgtgcca	10	9	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	62321852	62321852	G	A	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.2263	p.E755K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	246	0	0	575	209	26.66	-	-	-	A	62321852	G	A	62321852	3	1	217	1	0	0	0	0	1	0	0	0	7785	1175	41	2	2329	2	INADL	1	62321852	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	7127789	62321852	186928769	9	13247										
INADL	0	genome.wustl.edu	37	chr1	62330295	62330295	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acagccgtatggctattgccCtgaaaatgtggtaagagatt	11	7	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	62330295	62330295	C	G	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.2825	p.P942R	0.001	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	160	0	0	425	62	12.73	-	-	-	G	62330295	C	G	62330295	3	3	217	1	0	0	0	0	1	0	0	0	7785	681	24	4	2899	4	INADL	1	62330295	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	8443	62330295	186920326	10	13248										
EFCAB7	0	genome.wustl.edu	37	chr1	64011606	64011606	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggactggcaacacatgcaatCaaaaggttgcttcttcttag	9	9	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	64011606	64011606	C	G	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	nonsense	c.824	p.S275*	0.990	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	96	0	0	215	114	34.65	-	-	-	G	64011606	C	G	64011606	4	3	217	1	0	0	0	0	0	1	0	0	4975	838	29	2	846	2	EFCAB7	1	64011606	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1681311	64011606	185239015	11	13249										
ELTD1	0	genome.wustl.edu	37	chr1	79357213	79357213	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ataagaaattgtttacctttCtagataaaacacacaggaat	5	6	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	79357213	79357213	C	G	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.2006	p.R669T	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	108	0	0	68	29	29.9	-	-	-	G	79357213	C	G	79357213	3	3	217	1	0	0	0	0	1	0	0	0	5121	913	32	2	74	2	ELTD1	1	79357213	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	15345607	79357213	169893408	12	13250										
SASS6	0	genome.wustl.edu	37	chr1	100588021	100588021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agctaagaagtctaccagaaGaccttgctggaattttaaac	8	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	100588021	100588021	G	A	SNP	SASS6	ENST00000287482	human	ensembl	69_37n	-1	known	missense	c.226	p.L76F	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876	112	0	0	120	56	31.82	-	-	-	A	100588021	G	A	100588021	3	1	217	1	0	0	0	0	1	0	0	0	13937	942	33	2	1803	2	SASS6	1	100588021	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	21230808	100588021	148662600	13	13251										
NTNG1	0	genome.wustl.edu	37	chr1	107691311	107691311	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtttggggacattatgatttGtgtaagactcagatttacac	10	5	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	107691311	107691311	G	A	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	1	known	silent	c.96	p.L32	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	198	0	0	82	20	19.61	-	-	-	A	107691311	G	A	107691311	2	1	217	1	0	0	0	0	0	0	0	1	10777	1368	48	4		4	NTNG1	1	107691311	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	7103290	107691311	141559310	14	13252										
FAM46C	0	genome.wustl.edu	37	chr1	118166421	118166421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acgactacctcatgatccttCgcagggtggtgaacgagagc	12	11	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	118166421	118166421	C	T	SNP	FAM46C	ENST00000369448	human	ensembl	69_37n	1	known	missense	c.931	p.R311C	0.997	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46C	HGNC	ENSG00000183508	125	0	0	133	53	28.49	-	-	-	T	118166421	C	T	118166421	3	4	217	1	0	0	0	0	1	0	0	0	5613	884	31	1	933	1	FAM46C	1	118166421	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	10475110	118166421	131084200	15	13253										
TNFAIP8L2	0	genome.wustl.edu	37	chr1	151131244	151131244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	actgagtaagatggcgggtcGctctgtggctcatctcttca	12	10	4	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	151131244	151131244	G	A	SNP	TNFAIP8L2	ENST00000368910	human	ensembl	69_37n	1	known	missense	c.71	p.R24H	1.000	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8L2	HGNC	ENSG00000163154	93	0	0	209	32	13.28	-	-	-	A	151131244	G	A	151131244	3	1	217	1	0	0	0	0	1	0	0	0	16373	1087	38	1	73	1	TNFAIP8L2	1	151131244	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	32964823	151131244	98119377	16	13254										
CGN	0	genome.wustl.edu	37	chr1	151509346	151509346	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaacagctccaggcccggatCaagtctctggagaaggactc	12	12	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	151509346	151509346	C	T	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	silent	c.3447	p.I1149	1.000	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	60	0	0	81	25	23.58	-	-	-	T	151509346	C	T	151509346	2	4	217	1	0	0	0	0	0	0	0	1	3332	816	29	2		2	CGN	1	151509346	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	378102	151509346	97741275	17	13255										
FLG	0	genome.wustl.edu	37	chr1	152284025	152284025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtagatgaaagaccctgaacGtccagaccttccccctgacc	8	15	0	6			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	152284025	152284025	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3337	p.R1113S	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	377	0	0	414	103	19.92	-	-	-	T	152284025	G	T	152284025	3	4	217	1	0	0	0	0	1	0	0	0	5968	1145	40	3	8852	3	FLG	1	152284025	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	774679	152284025	96966596	18	13256										
DAP3	0	genome.wustl.edu	37	chr1	155699069	155699069	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agagctaaagaggcaaagttCtttgggtatgtttcacctcc	10	8	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	155699069	155699069	C	G	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	missense	c.755	p.S252C	0.205	pfam_Ribosomal_S23/S29_mit	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	104	0	0	249	70	21.94	-	-	-	G	155699069	C	G	155699069	3	3	217	1	0	0	0	0	1	0	0	0	4266	913	32	2	785	2	DAP3	1	155699069	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3415044	155699069	93551552	19	13257										
GON4L	0	genome.wustl.edu	37	chr1	155785664	155785664	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	atctgaggaatcatcttcttCaaggtggatatccacaaact	7	9	5	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	155785664	155785664	C	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.1093	p.E365Q	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	63	0	0	161	19	10.56	-	-	-	G	155785664	C	G	155785664	3	3	217	1	0	0	0	0	1	0	0	0	6621	835	29	2	5846	2	GON4L	1	155785664	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	86595	155785664	93464957	20	13258										
CD1C	0	genome.wustl.edu	37	chr1	158261127	158261127	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagacctagagttgttatttCgtttctacctctttggatta	7	8	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	158261127	158261127	C	A	SNP	CD1C	ENST00000443761	human	ensembl	69_37n	1	novel	nonsense	c.68	p.S23*	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD1C	HGNC	ENSG00000158481	341	1	0.29	758	165	17.86	-	-	-	A	158261127	C	A	158261127	4	1	217	1	0	0	0	0	0	1	0	0	3005	884	31	3	271	3	CD1C	1	158261127	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2475463	158261127	90989494	21	13259										
ATP1A4	0	genome.wustl.edu	37	chr1	160156095	160156095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtggctctgtgccattccctAcagtattctcatcttcgtct	7	13	4	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	160156095	160156095	A	G	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.2999	p.Y1000C	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	374	0	0	458	152	24.84	-	-	-	G	160156095	A	G	160156095	3	3	217	1	0	0	0	0	1	0	0	0	1135	391	14	5	3081	5	ATP1A4	1	160156095	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	1894968	160156095	89094526	22	13260										
LRRC52	0	genome.wustl.edu	37	chr1	165513765	165513765	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgcatctaggactcctcagtGaccttgtttatttggactgt	9	9	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	165513765	165513765	G	A	SNP	LRRC52	ENST00000294818	human	ensembl	69_37n	1	known	missense	c.232	p.D78N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763	366	0	0	592	124	17.32	-	-	-	A	165513765	G	A	165513765	3	1	217	1	0	0	0	0	1	0	0	0	9076	1290	45	2	234	2	LRRC52	1	165513765	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5357670	165513765	83736856	23	13261										
PAPPA2	0	genome.wustl.edu	37	chr1	176564441	176564441	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tacaacatcagctggcagctGagcgtccaccaggtccacaa	9	14	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	176564441	176564441	G	C	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	silent	c.1701	p.L567	0.986	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	227	0	0	254	33	11.5	-	-	-	C	176564441	G	C	176564441	2	2	217	1	0	0	0	0	0	0	0	1	11506	1277	45	2		2	PAPPA2	1	176564441	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	11050676	176564441	72686180	24	13262										
FAM5C	0	genome.wustl.edu	37	chr1	190068000	190068000	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtttcaaagccaatatagtgAtcggtggactcggcgacttc	11	9	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	190068000	190068000	A	T	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1449	p.D483E	0.996	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	260	0	0	228	72	24	-	-	-	T	190068000	A	T	190068000	3	4	217	1	0	0	0	0	1	0	0	0	5639	330	12	5	855	5	FAM5C	1	190068000	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	13503559	190068000	59182621	25	13263										
NR5A2	0	genome.wustl.edu	37	chr1	200080383	200080383	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggagtgagctcttaatcctCgaccacatttaccgacaagt	8	11	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	200080383	200080383	C	T	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	silent	c.1164	p.L388	0.729	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	140	0	0	263	63	19.27	-	-	-	T	200080383	C	T	200080383	2	4	217	1	0	0	0	0	0	0	0	1	10709	871	31	1		1	NR5A2	1	200080383	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	10012383	200080383	49170238	26	13264										
PPFIA4	0	genome.wustl.edu	37	chr1	203012602	203012602	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaggaagagatatcagaactGaaagcagaacggaataacac	11	6	1	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	203012602	203012602	G	A	SNP	PPFIA4	ENST00000367240	human	ensembl	69_37n	1	known	silent	c.312	p.L104	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_Prefoldin,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847	17	0	0	16	5	23.81	-	-	-	A	203012602	G	A	203012602	2	1	217	1	0	0	0	0	0	0	0	1	12385	1305	45	2		2	PPFIA4	1	203012602	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2932219	203012602	46238019	27	13265										
PPP1R15B	0	genome.wustl.edu	37	chr1	204379265	204379265	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cctcccaaaatataatctatCagtttgttactacaagctgg	5	10	2	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	204379265	204379265	C	T	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	silent	c.1275	p.L425	0.987	pfam_Prot_Pase1_reg-su15A/B_C	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	168	0	0	223	27	10.8	-	-	-	T	204379265	C	T	204379265	2	4	217	1	0	0	0	0	0	0	0	1	12441	813	29	2		2	PPP1R15B	1	204379265	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1366663	204379265	44871356	28	13266										
PPP1R15B	0	genome.wustl.edu	37	chr1	204380369	204380369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtccagtaactgacccgagtCtcgggctgggcagaggaaag	15	10	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	204380369	204380369	C	G	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	missense	c.171	p.E57D	0.968	pfam_Prot_Pase1_reg-su15B_N	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	75	0	0	75	22	22.68	-	-	-	G	204380369	C	G	204380369	3	3	217	1	0	0	0	0	1	0	0	0	12441	912	32	2	1978	2	PPP1R15B	1	204380369	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1104	204380369	44870252	29	13267										
DSTYK	0	genome.wustl.edu	37	chr1	205156711	205156711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgtccagggagcgccaggctGacccgagtctgagtcccata	13	13	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	205156711	205156711	G	A	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	silent	c.489	p.V163	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	96	0	0	213	52	19.55	-	-	-	A	205156711	G	A	205156711	2	1	217	1	0	0	0	0	0	0	0	1	4820	1277	45	2		2	DSTYK	1	205156711	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	776342	205156711	44093910	30	13268										
USH2A	0	genome.wustl.edu	37	chr1	215932030	215932030	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggtgttgacataggtgtttGaacaatgtaatcatcactag	10	5	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	215932030	215932030	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11296	p.Q3766E	0.977	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	312	0	0	365	107	22.67	-	-	-	C	215932030	G	C	215932030	3	2	217	1	0	0	0	0	1	0	0	0	17133	1299	45	2	4372	2	USH2A	1	215932030	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	10775319	215932030	33318591	31	13269										
USH2A	0	genome.wustl.edu	37	chr1	215933100	215933100	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctcaattgatattgagaaacGaggccattgggcttttctgg	11	7	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	215933100	215933100	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.11133	p.L3711	0.996	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	261	0	0	364	103	22.01	-	-	-	C	215933100	G	C	215933100	2	2	217	1	0	0	0	0	0	0	0	1	17133	1045	37	3		3	USH2A	1	215933100	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1070	215933100	33317521	32	13270										
RRP15	0	genome.wustl.edu	37	chr1	218480877	218480877	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaagcgtgctaagttgatatCaactgtttccaagaaagatt	8	6	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	218480877	218480877	C	G	SNP	RRP15	ENST00000366932	human	ensembl	69_37n	1	known	nonsense	c.608	p.S203*	0.997	pfam_DUF1665	pfam_DUF1665	-	no_errors	RRP15	HGNC	ENSG00000067533	91	0	0	135	35	20.59	-	-	-	G	218480877	C	G	218480877	4	3	217	1	0	0	0	0	0	1	0	0	13773	838	29	2	622	2	RRP15	1	218480877	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2547777	218480877	30769744	33	13271										
FBXO28	0	genome.wustl.edu	37	chr1	224341019	224341019	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aggatcagatgtttctggaaGactcatgggctctcctccag	11	10	4	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	224341019	224341019	G	A	SNP	FBXO28	ENST00000366862	human	ensembl	69_37n	1	known	missense	c.692	p.R231K	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO28	HGNC	ENSG00000143756	215	0	0	447	86	16.14	-	-	-	A	224341019	G	A	224341019	3	1	217	1	0	0	0	0	1	0	0	0	5784	942	33	2	706	2	FBXO28	1	224341019	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5860142	224341019	24909602	34	13272										
RYR2	0	genome.wustl.edu	37	chr1	237753282	237753282	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcagtttcttcaagttccatCaaaccatgaacatatagagg	6	9	4	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	237753282	237753282	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	nonsense	c.3782	p.S1261*	0.998	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	155	0	0	147	44	22.92	-	-	-	G	237753282	C	G	237753282	4	3	217	1	0	0	0	0	0	1	0	0	13855	838	29	2	3906	2	RYR2	1	237753282	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	13412263	237753282	11497339	35	13273										
SDCCAG8	0	genome.wustl.edu	37	chr1	243542029	243542029	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tctctctacctaaggaaataGagaaattgagaatagaactg	8	6	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	243542029	243542029	G	C	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.1480	p.E494Q	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	146	0	0	276	66	19.3	-	-	-	C	243542029	G	C	243542029	3	2	217	1	0	0	0	0	1	0	0	0	14047	943	33	2	1530	2	SDCCAG8	1	243542029	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5788747	243542029	5708592	36	13274										
ZNF238	0	genome.wustl.edu	37	chr1	244217588	244217588	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gcccagtgatgaagatgaagGagaagatgaaaaattgaaca	12	4	0	8			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	244217588	244217588	G	C	SNP	ZNF238	ENST00000358704	human	ensembl	69_37n	1	known	missense	c.512	p.G171A	0.999	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF238	HGNC	ENSG00000179456	120	0	0	109	31	22.14	-	-	-	C	244217588	G	C	244217588	3	2	217	1	0	0	0	0	1	0	0	0	17886	1174	41	2	518	2	ZNF238	1	244217588	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	675559	244217588	5033033	37	13275										
ZNF124	0	genome.wustl.edu	37	chr1	247320336	247320336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tctccagtatgagttctttcAtggtcacgaaggtgactgga	11	8	4	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	247320336	247320336	A	G	SNP	ZNF124	ENST00000543802	human	ensembl	69_37n	-1	known	silent	c.588	p.H196	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418	263	1	0.38	326	51	13.49	-	-	-	G	247320336	A	G	247320336	2	3	217	1	0	0	0	0	0	0	0	1	17816	214	8	5		5	ZNF124	1	247320336	Silent	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	3102748	247320336	1930285	38	13276										
OR2L3	0	genome.wustl.edu	37	chr1	248224911	248224911	+	Frame_Shift_Del	DEL	G	G	-													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgagtcagagaatctgctctGggaaaatgtagaaacatttt							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	1	248224911	248224911	G	-	DEL	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	frame_shift_del	c.928	p.M312fs	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	276	0	0	307	74	19.37	-	-	-	-	248224911	G	-	248224911	7	5	217	1	0	1	0	1	0	0	0	0	11081	1348	47	0	930	0	OR2L3	1	248224911	Frame_Shift_Del	DEL	G	TCGA-A8-A09G-01A-21W-A019-09	904575	248224911	1025710	39	13277										
NTSR2	0	genome.wustl.edu	37	chr2	11800210	11800210	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acgtagcagtacatgagcctGcgggcatggtacggcagcca	14	11	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	11800210	11800210	G	A	SNP	NTSR2	ENST00000306928	human	ensembl	69_37n	-1	known	silent	c.948	p.R316	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_NT2_rcpt,prints_NT_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NTSR2	HGNC	ENSG00000169006	51	0	0	37	8	17.78	-	-	-	A	11800210	G	A	11800210	2	1	217	1	0	0	0	0	0	0	0	1	10784	1306	46	4		4	NTSR2	2	11800210	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		11800210	231399163	40	13278										
SDC1	0	genome.wustl.edu	37	chr2	20403830	20403831	+	Frame_Shift_Ins	INS	-	-	G													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgtgtggtctccctgggtcINSggggggtggcctcctgctcc							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	20403830	20403831	-	G	INS	SDC1	ENST00000254351	human	ensembl	69_37n	-1	known	frame_shift_ins	c.371_370	p.R124fs	0.001:0.001	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884	33	0	0	16	2	11.11	-	-	-	G	20403831	-	G	20403830	7	5	217	1	0	1	1	0	0	0	0	0	14039	884	31	0	573	0	SDC1	2	20403830	Frame_Shift_Ins	INS	-	TCGA-A8-A09G-01A-21W-A019-09	8603620	20403830	222795543	41	13279										
IFT172	0	genome.wustl.edu	37	chr2	27672946	27672946	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cgttggggaggcagaaacttGatggagagttcagctgcctg	16	7	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	27672946	27672946	G	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.3969	p.I1323M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	130	0	0	73	34	31.78	-	-	-	C	27672946	G	C	27672946	3	2	217	1	0	0	0	0	1	0	0	0	7611	1280	45	2	1332	2	IFT172	2	27672946	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	7269116	27672946	215526427	42	13280										
THADA	0	genome.wustl.edu	37	chr2	43657437	43657437	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agagaaaaactctctccctgTcattctgtgaaagaaggagg	10	8	3	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	43657437	43657437	T	A	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.3841	p.T1281S	1.000	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	12	0	0	5	5	50	-	-	-	A	43657437	T	A	43657437	3	1	217	1	0	0	0	0	1	0	0	0	15935	1667	58	5	2068	5	THADA	2	43657437	Missense_Mutation	SNP	T	TCGA-A8-A09G-01A-21W-A019-09	15984491	43657437	199541936	43	13281										
GFPT1	0	genome.wustl.edu	37	chr2	69601147	69601147	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttttaaagtaccagcagaatCatatcctctgtactccagtc	5	11	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	69601147	69601147	C	A	SNP	GFPT1	ENST00000357308	human	ensembl	69_37n	-1	known	missense	c.106	p.D36Y	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380	279	0	0	426	97	18.55	-	-	-	A	69601147	C	A	69601147	3	1	217	1	0	0	0	0	1	0	0	0	6397	826	29	2	2011	2	GFPT1	2	69601147	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	25943710	69601147	173598226	44	13282										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71186192	71186192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agcccattgacaaggggccaGtggtcatggcggaggacttt	15	9	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	71186192	71186192	G	A	SNP	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	missense	c.412	p.V138M	0.053	tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	33	0	0	40	6	13.04	-	-	-	A	71186192	G	A	71186192	3	1	217	1	0	0	0	0	1	0	0	0	1182	1029	36	4	430	4	ATP6V1B1	2	71186192	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1585045	71186192	172013181	45	13283										
CCDC142	0	genome.wustl.edu	37	chr2	74709786	74709786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agtcctcgctcacatccgccGgcgtcggccaccacggcgtc	11	19	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	74709786	74709786	G	A	SNP	CCDC142	ENST00000393965	human	ensembl	69_37n	-1	known	missense	c.179	p.P60L	0.000	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637	25	0	0	9	9	47.37	-	-	-	A	74709786	G	A	74709786	3	1	217	1	0	0	0	0	1	0	0	0	2801	1116	39	1	2088	1	CCDC142	2	74709786	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	3523594	74709786	168489587	46	13284										
LRRTM4	0	genome.wustl.edu	37	chr2	77746900	77746900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgcagttctttgggcaagctCtctgagcacccgtgagcata	11	11	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	77746900	77746900	C	T	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	missense	c.98	p.R33K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	141	0	0	136	16	10.53	-	-	-	T	77746900	C	T	77746900	3	4	217	1	0	0	0	0	1	0	0	0	9108	913	32	2	1691	2	LRRTM4	2	77746900	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3037114	77746900	165452473	47	13285										
NCK2	0	genome.wustl.edu	37	chr2	106509512	106509512	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgcagctcgtggacaatgtCtactgcattgggcagcggcg	15	10	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	106509512	106509512	C	T	SNP	NCK2	ENST00000233154	human	ensembl	69_37n	1	known	silent	c.1023	p.V341	1.000	pfam_SH2,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051	61	0	0	17	10	37.04	-	-	-	T	106509512	C	T	106509512	2	4	217	1	0	0	0	0	0	0	0	1	10292	900	32	2		2	NCK2	2	106509512	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	28762612	106509512	136689861	48	13286										
WDR33	0	genome.wustl.edu	37	chr2	128463946	128463946	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctcctcgcctcggcgggccaGagttcatgttactccctcta	9	16	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	128463946	128463946	G	C	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3962	p.S1321C	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	189	0	0	71	34	32.38	-	-	-	C	128463946	G	C	128463946	3	2	217	1	0	0	0	0	1	0	0	0	17384	942	33	2	52	2	WDR33	2	128463946	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	21954434	128463946	114735427	49	13287										
UGGT1	0	genome.wustl.edu	37	chr2	128944345	128944345	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aacgtggtgtgatgacgcctCtaagaaaagggcaaaaacca	11	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	128944345	128944345	C	G	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.4448	p.S1483C	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	218	0	0	258	56	17.78	-	-	-	G	128944345	C	G	128944345	3	3	217	1	0	0	0	0	1	0	0	0	17038	913	32	2	4602	2	UGGT1	2	128944345	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	480399	128944345	114255028	50	13288										
MCM6	0	genome.wustl.edu	37	chr2	136598406	136598406	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtcagttactttcactatctCaatcttcgagcaagtagtta	6	9	4	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	136598406	136598406	C	G	SNP	MCM6	ENST00000264156	human	ensembl	69_37n	-1	known	nonstop	c.2465	p.*822S	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003	73	0	0	72	15	17.24	-	-	-	G	136598406	C	G	136598406	4	3	217	1	0	0	0	0	0	0	0	0	9462	837	29	2	4	2	MCM6	2	136598406	Nonstop_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	7654061	136598406	106600967	51	13289										
ZEB2	0	genome.wustl.edu	37	chr2	145147383	145147383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgccctttctcgcgcgcctCgcgctccgccgcttcccgct	10	21	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	145147383	145147383	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	missense	c.3280	p.E1094K	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	105	0	0	150	17	10.12	-	-	-	T	145147383	C	T	145147383	3	4	217	1	0	0	0	0	1	0	0	0	17720	893	31	1	368	1	ZEB2	2	145147383	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	8548977	145147383	98051990	52	13290										
LYPD6	0	genome.wustl.edu	37	chr2	150325179	150325179	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agaccagatactgctacactCagcacacaatggaagtcaca	7	12	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	150325179	150325179	C	T	SNP	LYPD6	ENST00000334166	human	ensembl	69_37n	1	known	nonsense	c.238	p.Q80*	1.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	LYPD6	HGNC	ENSG00000187123	566	1	0.18	409	51	11.09	-	-	-	T	150325179	C	T	150325179	4	4	217	1	0	0	0	0	0	1	0	0	9181	827	29	2	248	2	LYPD6	2	150325179	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5177796	150325179	92874194	53	13291										
FMNL2	0	genome.wustl.edu	37	chr2	153488524	153488524	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gttcccttttgttttcagctCttagatacaaagtcaacaga	6	9	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	153488524	153488524	C	G	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	silent	c.2553	p.L851	0.981	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	68	0	0	65	33	33.33	-	-	-	G	153488524	C	G	153488524	2	3	217	1	0	0	0	0	0	0	0	1	5998	900	32	2		2	FMNL2	2	153488524	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3163345	153488524	89710849	54	13292										
LRP2	0	genome.wustl.edu	37	chr2	170082970	170082970	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatgtattgctcagcatcatCaaattcaacatctaaaccat	4	10	5	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	170082970	170082970	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.5356	p.D1786H	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	205	0	0	217	48	18.11	-	-	-	G	170082970	C	G	170082970	3	3	217	1	0	0	0	0	1	0	0	0	9022	826	29	2	8803	2	LRP2	2	170082970	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	16594446	170082970	73116403	55	13293										
RAPGEF4	0	genome.wustl.edu	37	chr2	173885435	173885435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cttgcccgcgagagcaattcGattcactggtaggtgtggat	13	9	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	173885435	173885435	G	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	missense	c.2245	p.D749N	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	184	0	0	185	46	19.91	-	-	-	A	173885435	G	A	173885435	3	1	217	1	0	0	0	0	1	0	0	0	13129	1058	37	1	2351	1	RAPGEF4	2	173885435	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	3802465	173885435	69313938	56	13294										
GPR155	0	genome.wustl.edu	37	chr2	175337813	175337813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagaaaaagaatttccaagtCcatcaagaaaattttcgaca	5	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	175337813	175337813	C	T	SNP	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	missense	c.740	p.G247E	1.000	pfam_Auxin_eff	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328	180	0	0	151	71	31.98	-	-	-	T	175337813	C	T	175337813	3	4	217	1	0	0	0	0	1	0	0	0	6710	855	30	2	1928	2	GPR155	2	175337813	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1452378	175337813	67861560	57	13295										
TTN	0	genome.wustl.edu	37	chr2	179414943	179414943	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctttaattctaaggctctctCcggacttaataatgagacca	6	10	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179414943	179414943	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.83918	p.G27973A	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	233	0	0	165	64	27.95	-	-	-	G	179414943	C	G	179414943	3	3	217	1	0	0	0	0	1	0	0	0	16832	855	30	2	16461	2	TTN	2	179414943	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	4077130	179414943	63784430	58	13296			1	29		5	5	4806	C		6.683524e-08
TTN	0	genome.wustl.edu	37	chr2	179417111	179417111	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cgaacaaattcactttctttCagtggcaagccatctttcag	6	11	5	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179417111	179417111	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.82812	p.L27604	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	124	0	0	105	40	27.59	-	-	-	T	179417111	C	T	179417111	2	4	217	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179417111	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2168	179417111	63782262	59	13297			1	29		5	5	4806	C		6.683524e-08
TTN	0	genome.wustl.edu	37	chr2	179417322	179417322	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tctcatttttggcaaacactCtgaactccaggactgactgc	7	12	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179417322	179417322	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.82601	p.R27534T	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	126	0	0	97	40	28.78	-	-	-	G	179417322	C	G	179417322	3	3	217	1	0	0	0	0	1	0	0	0	16832	913	32	2	17786	2	TTN	2	179417322	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	211	179417322	63782051	60	13298			1	29		5	5	4806	C		6.683524e-08
TTN	0	genome.wustl.edu	37	chr2	179417407	179417407	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agcgtgggaccacgtctgttCacctttacctttcctttcta	7	13	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179417407	179417407	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.82516	p.E27506K	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	134	0	0	95	41	30.15	-	-	-	T	179417407	C	T	179417407	3	4	217	1	0	0	0	0	1	0	0	0	16832	835	29	2	17871	2	TTN	2	179417407	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	85	179417407	63781966	61	13299			1	29		5	5	4806	C		6.683524e-08
TTN	0	genome.wustl.edu	37	chr2	179419748	179419748	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagtgcattggtttgtaattCtttatcatctttataccact	5	8	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179419748	179419748	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.80734	p.E26912K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	128	0	0	84	38	31.15	-	-	-	T	179419748	C	T	179419748	3	4	217	1	0	0	0	0	1	0	0	0	16832	922	32	2	19669	2	TTN	2	179419748	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2341	179419748	63779625	62	13300			1	29		5	5	4806	C		6.683524e-08
TTN	0	genome.wustl.edu	37	chr2	179605967	179605967	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cttccctctgagggtcattgAcaatgaaagttccagagcca	9	11	2	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	179605967	179605967	A	G	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11480	p.V3827A	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	372	0	0	282	73	20.56	-	-	-	G	179605967	A	G	179605967	3	3	217	1	0	0	0	0	1	0	0	0	16832	275	10	5	92796	5	TTN	2	179605967	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	186219	179605967	63593406	63	13301										
MYO1B	0	genome.wustl.edu	37	chr2	192257811	192257811	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cttattagttattcaaattaGaagacctgaggaagcaacgc	8	7	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	192257811	192257811	G	A	SNP	MYO1B	ENST00000304164	human	ensembl	69_37n	1	known	missense	c.2089	p.E697K	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	139	0	0	74	11	12.94	-	-	-	A	192257811	G	A	192257811	3	1	217	1	0	0	0	0	1	0	0	0	10141	943	33	2	2163	2	MYO1B	2	192257811	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	12651844	192257811	50941562	64	13302										
CCDC150	0	genome.wustl.edu	37	chr2	197531552	197531552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agagttggagattgctacttCacagctcaaatctgatctaa	8	8	4	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	197531552	197531552	C	T	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.872	p.S291L	0.074	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	143	0	0	110	24	17.91	-	-	-	T	197531552	C	T	197531552	3	4	217	1	0	0	0	0	1	0	0	0	2810	838	29	2	898	2	CCDC150	2	197531552	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5273741	197531552	45667821	65	13303										
PLEKHM3	0	genome.wustl.edu	37	chr2	208841568	208841568	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gccacattggcagctatcttCagagcctccatccattcctg	7	15	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	208841568	208841568	C	T	SNP	PLEKHM3	ENST00000447645	human	ensembl	69_37n	-1	known	missense	c.607	p.E203K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHM3	HGNC	ENSG00000178385	147	0	0	120	58	32.58	-	-	-	T	208841568	C	T	208841568	3	4	217	1	0	0	0	0	1	0	0	0	12156	813	29	2	956	2	PLEKHM3	2	208841568	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	11310016	208841568	34357805	66	13304										
COL6A3	0	genome.wustl.edu	37	chr2	238280722	238280722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acacgtactccagggcattgCccacgttgatctgccgccct	9	16	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	2	238280722	238280722	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.3938	p.G1313V	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	95	0	0	48	8	14.29	-	-	-	A	238280722	C	A	238280722	3	1	217	1	0	0	0	0	1	0	0	0	3731	739	26	4	5786	4	COL6A3	2	238280722	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	29439154	238280722	4918651	67	13305										
CHL1	0	genome.wustl.edu	37	chr3	423864	423864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ccttcctttattaattagatGttccggatccaccagaaaac	5	11	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	423864	423864	G	A	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	missense	c.1879	p.V627I	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	216	0	0	186	74	28.46	-	-	-	A	423864	G	A	423864	3	1	217	1	0	0	0	0	1	0	0	0	3378	1377	48	4	1937	4	CHL1	3	423864	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		423864	197598566	68	13306										
RFTN1	0	genome.wustl.edu	37	chr3	16450944	16450944	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtctaaggaggaacagcaatCtaattccaagatgtagcctt	9	8	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	16450944	16450944	C	G	SNP	RFTN1	ENST00000334133	human	ensembl	69_37n	-1	known	missense	c.379	p.D127H	1.000	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378	72	0	0	71	26	26.8	-	-	-	G	16450944	C	G	16450944	3	3	217	1	0	0	0	0	1	0	0	0	13341	913	32	2	1385	2	RFTN1	3	16450944	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	16027080	16450944	181571486	69	13307										
SLC25A20	0	genome.wustl.edu	37	chr3	48896002	48896002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tttgtacaaggatgtgactcCttcatcccggatcagctccc	8	13	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	48896002	48896002	C	T	SNP	SLC25A20	ENST00000319017	human	ensembl	69_37n	-1	known	missense	c.781	p.G261R	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A20	HGNC	ENSG00000178537	54	0	0	81	13	13.83	-	-	-	T	48896002	C	T	48896002	3	4	217	1	0	0	0	0	1	0	0	0	14572	690	24	4	132	4	SLC25A20	3	48896002	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	32445058	48896002	149126428	70	13308										
RHOA	0	genome.wustl.edu	37	chr3	49412905	49412905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatatctgccacatagttctCaaacactgtgggcacataca	7	11	2	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	49412905	49412905	C	G	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.118	p.E40Q	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	136	0	0	229	70	23.41	-	-	-	G	49412905	C	G	49412905	3	3	217	1	0	0	0	0	1	0	0	0	13415	835	29	2	479	2	RHOA	3	49412905	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	516903	49412905	148609525	71	13309										
RPP14	0	genome.wustl.edu	37	chr3	58296293	58296293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gttcaaacagctgcttatttCggctgtgaaggacctgtttg	11	8	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	58296293	58296293	C	T	SNP	RPP14	ENST00000295959	human	ensembl	69_37n	1	known	missense	c.137	p.S46L	0.001	pfam_RNase_P/MRP_subunit	pfam_RNase_P/MRP_subunit	-	no_errors	RPP14	HGNC	ENSG00000163684	185	0	0	138	59	29.95	-	-	-	T	58296293	C	T	58296293	3	4	217	1	0	0	0	0	1	0	0	0	13695	893	31	1	143	1	RPP14	3	58296293	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	8883388	58296293	139726137	72	13310										
CRYBG3	0	genome.wustl.edu	37	chr3	97600022	97600022	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcagaacagaaggcatccaCaaagaaactttatattgggt	8	7	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	97600022	97600022	C	A	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1267	p.Q423K	0.976	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	150	0	0	138	40	22.47	-	-	-	A	97600022	C	A	97600022	3	1	217	1	0	0	0	0	1	0	0	0	3943	479	17	4	1281	4	CRYBG3	3	97600022	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	39303729	97600022	100422408	73	13311										
ITGB5	0	genome.wustl.edu	37	chr3	124560333	124560333	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cctcattgaagctgtccactCtgtctgtgagaggcagcaga	11	11	3	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	124560333	124560333	C	G	SNP	ITGB5	ENST00000296181	human	ensembl	69_37n	-1	known	missense	c.677	p.R226T	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781	97	0	0	74	29	28.16	-	-	-	G	124560333	C	G	124560333	3	3	217	1	0	0	0	0	1	0	0	0	7952	913	32	2	1766	2	ITGB5	3	124560333	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	26960311	124560333	73462097	74	13312										
PPP2R3A	0	genome.wustl.edu	37	chr3	135825064	135825064	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttctttccaatcaggatgttGagaacgatgggcctgagccc	11	10	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	135825064	135825064	G	C	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	missense	c.3229	p.E1077Q	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	129	0	0	130	54	29.35	-	-	-	C	135825064	G	C	135825064	3	2	217	1	0	0	0	0	1	0	0	0	12465	1291	45	2	3411	2	PPP2R3A	3	135825064	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	11264731	135825064	62197366	75	13313										
AADACL2	0	genome.wustl.edu	37	chr3	151474795	151474795	+	Frame_Shift_Del	DEL	G	G	-													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcaggtgcagaatgatgctGaaataaaacataaaatcaag							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	151474795	151474795	G	-	DEL	AADACL2	ENST00000356517	human	ensembl	69_37n	1	known	frame_shift_del	c.619	p.E207fs	0.192	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953	238	0	0	252	94	26.18	-	-	-	-	151474795	G	-	151474795	7	5	217	1	0	1	0	1	0	0	0	0	11	1291	45	0	637	0	AADACL2	3	151474795	Frame_Shift_Del	DEL	G	TCGA-A8-A09G-01A-21W-A019-09	15649731	151474795	46547635	76	13314										
EIF4A2	0	genome.wustl.edu	37	chr3	186504030	186504030	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gttttaaggatcaaatctatGagattttccaaaaactaaac	5	6	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	186504030	186504030	G	C	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.598	p.E200Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	68	0	0	56	26	31.71	-	-	-	C	186504030	G	C	186504030	3	2	217	1	0	0	0	0	1	0	0	0	5062	1291	45	2	617	2	EIF4A2	3	186504030	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	35029235	186504030	11518400	77	13315										
EIF4A2	0	genome.wustl.edu	37	chr3	186504350	186504351	+	Frame_Shift_Del	DEL	GA	GA	-													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaagtgaccaaaaaattcatGagagatccaattcgaattct							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	3	186504350	186504351	GA	-	DEL	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	frame_shift_del	c.690_691	p.D232fs	1.000:1.000	smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	112	0	0	83	20	19.23	-	-	-	-	186504351	GA	-	186504350	7	5	217	1	0	1	0	1	0	0	0	0	5062	1290	45	0	713	0	EIF4A2	3	186504350	Frame_Shift_Del	DEL	GA	TCGA-A8-A09G-01A-21W-A019-09	320	186504350	11518080	78	13316										
HTT	0	genome.wustl.edu	37	chr4	3134377	3134377	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gccattctctgtgggaccctCatctgctccatcctcagcag	8	16	4	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	3134377	3134377	C	T	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	silent	c.2325	p.L775	0.000	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	226	0	0	118	94	44.34	-	-	-	T	3134377	C	T	3134377	2	4	217	1	0	0	0	0	0	0	0	1	7511	813	29	2		2	HTT	4	3134377	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		3134377	188019899	79	13317										
GPR125	0	genome.wustl.edu	37	chr4	22390354	22390354	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tccaaggctgatgtagaaatCagagacaaagacattgaatc	9	7	1	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	22390354	22390354	C	T	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	silent	c.2940	p.L980	0.991	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	315	0	0	200	59	22.78	-	-	-	T	22390354	C	T	22390354	2	4	217	1	0	0	0	0	0	0	0	1	6689	813	29	2		2	GPR125	4	22390354	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	19255977	22390354	168763922	80	13318										
WDFY3	0	genome.wustl.edu	37	chr4	85687113	85687114	+	Frame_Shift_Ins	INS	-	-	T													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gctgtaactgtggtggaatgINStaagtgttcctccataaaca							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	85687113	85687114	-	T	INS	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5038_5037	p.H1679fs	1.000:1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	358	0	0	229	152	39.9	-	-	-	T	85687114	-	T	85687113	7	5	217	1	0	1	1	0	0	0	0	0	17367	1377	48	0	5690	0	WDFY3	4	85687113	Frame_Shift_Ins	INS	-	TCGA-A8-A09G-01A-21W-A019-09	63296759	85687113	105467163	81	13319										
DDIT4L	0	genome.wustl.edu	37	chr4	101111134	101111134	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gctgctcaaactgccagttgCaaccatggtcaacggctctg	10	13	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	101111134	101111134	C	T	SNP	DDIT4L	ENST00000273990	human	ensembl	69_37n	-1	known	missense	c.7	p.A3T	1.000	NULL	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358	49	0	0	10	16	61.54	-	-	-	T	101111134	C	T	101111134	3	4	217	1	0	0	0	0	1	0	0	0	4363	710	25	4	582	4	DDIT4L	4	101111134	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	15424021	101111134	90043142	82	13320										
ARFIP1	0	genome.wustl.edu	37	chr4	153802210	153802210	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatatattaagggataacaaGaaaaaatatgaaaatatttt	6	1	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	153802210	153802210	G	C	SNP	ARFIP1	ENST00000353617	human	ensembl	69_37n	1	known	missense	c.507	p.K169N	1.000	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP1	HGNC	ENSG00000164144	196	0	0	142	80	35.87	-	-	-	C	153802210	G	C	153802210	3	2	217	1	0	0	0	0	1	0	0	0	856	933	33	2	525	2	ARFIP1	4	153802210	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	52691076	153802210	37352066	83	13321										
SPATA4	0	genome.wustl.edu	37	chr4	177113882	177113882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgggattgcttagtaattctGataacctaatgttatcttta	7	5	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	4	177113882	177113882	G	A	SNP	SPATA4	ENST00000280191	human	ensembl	69_37n	-1	known	missense	c.584	p.S195L	0.507	pfam_DUF1042	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628	83	0	0	39	30	43.48	-	-	-	A	177113882	G	A	177113882	3	1	217	1	0	0	0	0	1	0	0	0	15101	1294	45	2	345	2	SPATA4	4	177113882	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	23311672	177113882	14040394	84	13322										
ERBB2IP	0	genome.wustl.edu	37	chr5	65338994	65338994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aagttgcatttgaatgtgatGaagacaaagatgaaagggag	13	2	0	6			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	65338994	65338994	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.1396	p.E466K	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	195	0	0	181	88	32.71	-	-	-	A	65338994	G	A	65338994	3	1	217	1	0	0	0	0	1	0	0	0	5244	1291	45	2	1450	2	ERBB2IP	5	65338994	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		65338994	115576266	85	13323										
TNPO1	0	genome.wustl.edu	37	chr5	72151660	72151660	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ataatgtgaaagcacactttCagaacttcccaaatggtgta	7	8	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	72151660	72151660	C	T	SNP	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	nonsense	c.265	p.Q89*	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	66	0	0	38	17	30.91	-	-	-	T	72151660	C	T	72151660	4	4	217	1	0	0	0	0	0	1	0	0	16430	827	29	2	279	2	TNPO1	5	72151660	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	6812666	72151660	108763600	86	13324										
TNPO1	0	genome.wustl.edu	37	chr5	72161500	72161500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatgttttagatcgtcctctCaacatcatgattcccaaatt	5	10	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	72161500	72161500	C	T	SNP	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	silent	c.540	p.L180	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	154	0	0	160	98	37.98	-	-	-	T	72161500	C	T	72161500	2	4	217	1	0	0	0	0	0	0	0	1	16430	813	29	2		2	TNPO1	5	72161500	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	9840	72161500	108753760	87	13325										
GPR98	0	genome.wustl.edu	37	chr5	90079129	90079129	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttataaatatctccatcattGatgacaatgaaaggttggta	7	5	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	90079129	90079129	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.13420	p.D4474N	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	180	0	0	220	75	25.42	-	-	-	A	90079129	G	A	90079129	3	1	217	1	0	0	0	0	1	0	0	0	6772	1290	45	2	13682	2	GPR98	5	90079129	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	17917629	90079129	90836131	88	13326										
PAM	0	genome.wustl.edu	37	chr5	102343195	102343195	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agtcctctgccaggccagttCactgttcctcacagcttggc	9	15	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	102343195	102343195	C	T	SNP	PAM	ENST00000379799	human	ensembl	69_37n	1	putative	missense	c.1366	p.H456Y	0.998	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PAM	HGNC	ENSG00000145730	194	0	0	200	107	34.85	-	-	-	T	102343195	C	T	102343195	3	4	217	1	0	0	0	0	1	0	0	0	11485	825	29	2	2123	2	PAM	5	102343195	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	12264066	102343195	78572065	89	13327										
AFF4	0	genome.wustl.edu	37	chr5	132224807	132224807	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gctttgttctccgaggcttaGaagaatcaagagttggtgca	12	7	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	132224807	132224807	G	C	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	missense	c.2696	p.S899C	0.998	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	109	0	0	173	63	26.69	-	-	-	C	132224807	G	C	132224807	3	2	217	1	0	0	0	0	1	0	0	0	359	942	33	2	827	2	AFF4	5	132224807	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	29881612	132224807	48690453	90	13328										
PCDHGA9	0	genome.wustl.edu	37	chr5	140784572	140784572	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcagatccctgcagacctgGaggcctcagaccttaccctc	8	16	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	140784572	140784572	G	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	nonsense	c.2053	p.E685*	0.050	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	128	0	0	58	25	30.12	-	-	-	T	140784572	G	T	140784572	4	4	217	1	0	0	0	0	0	1	0	0	11634	1175	41	2	2055	2	PCDHGA9	5	140784572	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	8559765	140784572	40130688	91	13329										
TCERG1	0	genome.wustl.edu	37	chr5	145888737	145888737	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agagaatttgaagaatatatCagagacaaatatatcacagc	7	5	2	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	145888737	145888737	C	T	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	silent	c.3024	p.I1008	1.000	superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	138	0	0	148	59	28.5	-	-	-	T	145888737	C	T	145888737	2	4	217	1	0	0	0	0	0	0	0	1	15780	816	29	2		2	TCERG1	5	145888737	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5104165	145888737	35026523	92	13330										
FAT2	0	genome.wustl.edu	37	chr5	150935931	150935931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatgtgttcatccttgttctCtctgtccagctgctgggctg	11	11	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	150935931	150935931	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.3607	p.E1203Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	102	0	0	89	21	19.09	-	-	-	G	150935931	C	G	150935931	3	3	217	1	0	0	0	0	1	0	0	0	5736	922	32	2	9526	2	FAT2	5	150935931	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5047194	150935931	29979329	93	13331										
GRIA1	0	genome.wustl.edu	37	chr5	153190725	153190725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	catgacttccccaagtccatGcaatcgattccttgcatgag	7	13	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	5	153190725	153190725	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.2691	p.M897I	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	82	0	0	79	26	24.53	-	-	-	A	153190725	G	A	153190725	3	1	217	1	0	0	0	0	1	0	0	0	6818	1319	46	4	2842	4	GRIA1	5	153190725	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2254794	153190725	27724535	94	13332										
SLC22A23	0	genome.wustl.edu	37	chr6	3298444	3298444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttagccaccggagggactcgGggaatatcctttaaagacac	11	10	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	3298444	3298444	G	A	SNP	SLC22A23	ENST00000406686	human	ensembl	69_37n	-1	known	missense	c.1091	p.P364L	0.999	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A23	HGNC	ENSG00000137266	108	0	0	75	34	31.19	-	-	-	A	3298444	G	A	3298444	3	1	217	1	0	0	0	0	1	0	0	0	14542	1232	43	4	993	4	SLC22A23	6	3298444	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		3298444	167816623	95	13333										
DTNBP1	0	genome.wustl.edu	37	chr6	15524673	15524673	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggtttatgcgtaagtgactgGcagatggttctcacgtctca	12	8	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	15524673	15524673	G	C	SNP	DTNBP1	ENST00000338950	human	ensembl	69_37n	-1	known	missense	c.895	p.P299A	0.000	NULL	pfam_Dysbindin,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	DTNBP1	HGNC	ENSG00000047579	172	0	0	150	37	19.79	-	-	-	C	15524673	G	C	15524673	3	2	217	1	0	0	0	0	1	0	0	0	4825	1203	42	4	269	4	DTNBP1	6	15524673	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	12226229	15524673	155590394	96	13334										
LRRC16A	0	genome.wustl.edu	37	chr6	25500451	25500451	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaaggggtttctctggatctCagcaactgtgaggtaagaac	12	7	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	25500451	25500451	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	silent	c.1383	p.L461	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	58	0	0	63	28	30.77	-	-	-	T	25500451	C	T	25500451	2	4	217	1	0	0	0	0	0	0	0	1	9037	813	29	2		2	LRRC16A	6	25500451	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	9975778	25500451	145614616	97	13335										
DHX16	0	genome.wustl.edu	37	chr6	30624478	30624478	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aggcccaggcggtatacaggCggaagcacttccctgcagcc	13	14	0	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	30624478	30624478	C	A	SNP	DHX16	ENST00000376442	human	ensembl	69_37n	-1	known	missense	c.2207	p.R736L	1.000	pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560	108	0	0	154	69	30.94	-	-	-	A	30624478	C	A	30624478	3	1	217	1	0	0	0	0	1	0	0	0	4538	768	27	3	946	3	DHX16	6	30624478	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5124027	30624478	140490589	98	13336										
CLIC1	0	genome.wustl.edu	37	chr6	31701957	31701957	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgtcaacggtggtaacattGaaggtgactcccttgagcca	12	9	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	31701957	31701957	G	T	SNP	CLIC1	ENST00000375779	human	ensembl	69_37n	-1	known	missense	c.123	p.F41L	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC1	HGNC	ENSG00000213719	58	0	0	54	26	32.5	-	-	-	T	31701957	G	T	31701957	3	4	217	1	0	0	0	0	1	0	0	0	3555	1281	45	2	622	2	CLIC1	6	31701957	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1077479	31701957	139413110	99	13337										
BAK1	0	genome.wustl.edu	37	chr6	33541599	33541599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtcatgatttgaagaatcttCgtaccacaaactggcccaac	7	11	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	33541599	33541599	C	T	SNP	BAK1	ENST00000360661	human	ensembl	69_37n	-1	known	missense	c.617	p.R206Q	1.000	NULL	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BAK1	HGNC	ENSG00000030110	48	0	0	33	10	23.26	-	-	-	T	33541599	C	T	33541599	3	4	217	1	0	0	0	0	1	0	0	0	1309	884	31	1	22	1	BAK1	6	33541599	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1839642	33541599	137573468	100	13338										
DNAH8	0	genome.wustl.edu	37	chr6	38950129	38950129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggtgtttttaaggagcgacGaaaatttggccccttaggat	12	6	0	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	38950129	38950129	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.12191	p.R4064Q	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	497	1	0.2	509	91	15.17	-	-	-	A	38950129	G	A	38950129	3	1	217	1	0	0	0	0	1	0	0	0	4642	1058	37	1	12517	1	DNAH8	6	38950129	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5408530	38950129	132164938	101	13339										
MEP1A	0	genome.wustl.edu	37	chr6	46761439	46761439	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggtgaacagaaggatatttCagaaatcaatttaggtgagt	11	3	2	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	46761439	46761439	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	missense	c.131	p.S44L	0.994	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	129	0	0	127	50	28.25	-	-	-	T	46761439	C	T	46761439	3	4	217	1	0	0	0	0	1	0	0	0	9546	838	29	2	141	2	MEP1A	6	46761439	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	7811310	46761439	124353628	102	13340										
KIAA1009	0	genome.wustl.edu	37	chr6	84871614	84871614	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcttctaaaatttttatttCatataatttctcacctataa	0	7	4	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	84871614	84871614	C	T	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.2527	p.E843K	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	128	0	0	114	39	25.49	-	-	-	T	84871614	C	T	84871614	3	4	217	1	0	0	0	0	1	0	0	0	8255	835	29	2	1716	2	KIAA1009	6	84871614	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	38110175	84871614	86243453	103	13341										
GRIK2	0	genome.wustl.edu	37	chr6	102124591	102124591	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgctgatacaaaggatgcaaAacccttactaaaagaaatga	7	7	0	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	102124591	102124591	A	G	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.635	p.K212R	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	154	0	0	124	47	27.49	-	-	-	G	102124591	A	G	102124591	3	3	217	1	0	0	0	0	1	0	0	0	6825	14	1	5	649	5	GRIK2	6	102124591	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	17252977	102124591	68990476	104	13342										
FRK	0	genome.wustl.edu	37	chr6	116289838	116289838	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaaaagattcttcttcgcgtGagaaaaaatcccccttcatc	6	11	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	6	116289838	116289838	G	A	SNP	FRK	ENST00000368626	human	ensembl	69_37n	-1	known	silent	c.531	p.L177	0.668	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	FRK	HGNC	ENSG00000111816	384	0	0	281	92	24.66	-	-	-	A	116289838	G	A	116289838	2	1	217	1	0	0	0	0	0	0	0	1	6097	1277	45	2		2	FRK	6	116289838	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	14165247	116289838	54825229	105	13343										
DNAH11	0	genome.wustl.edu	37	chr7	21640303	21640303	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctctcatttagaatgatatgGataacatgttaggcctggca	9	7	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	21640303	21640303	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.3010	p.D1004H	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	876	0	0	1012	369	26.72	-	-	-	C	21640303	G	C	21640303	3	2	217	1	0	0	0	0	1	0	0	0	4635	1174	41	2	3072	2	DNAH11	7	21640303	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		21640303	137498360	106	13344										
SFRP4	0	genome.wustl.edu	37	chr7	37951790	37951790	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgtgtggacactggcaagaaGaatttgtaatgagcgggact	14	5	0	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	37951790	37951790	G	C	SNP	SFRP4	ENST00000436072	human	ensembl	69_37n	-1	known	missense	c.722	p.S241C	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483	125	0	0	83	24	22.43	-	-	-	C	37951790	G	C	37951790	3	2	217	1	0	0	0	0	1	0	0	0	14251	942	33	2	330	2	SFRP4	7	37951790	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	16311487	37951790	121186873	107	13345										
STYXL1	0	genome.wustl.edu	37	chr7	75634621	75634621	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttgacatgggctttgattttCaagtccttctgaatcttggg	10	7	3	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	75634621	75634621	C	G	SNP	STYXL1	ENST00000248600	human	ensembl	69_37n	-1	known	missense	c.555	p.L185F	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYXL1	HGNC	ENSG00000127952	110	0	0	176	55	23.81	-	-	-	G	75634621	C	G	75634621	3	3	217	1	0	0	0	0	1	0	0	0	15452	825	29	2	402	2	STYXL1	7	75634621	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	37682831	75634621	83504042	108	13346										
ABCB1	0	genome.wustl.edu	37	chr7	87225097	87225097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctcaccattgaaaatacactGacagttggtttcttttcctt	5	10	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	87225097	87225097	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.102	p.V34	0.993	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	248	0	0	167	49	22.58	-	-	-	A	87225097	G	A	87225097	2	1	217	1	0	0	0	0	0	0	0	1	40	1277	45	2		2	ABCB1	7	87225097	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	11590476	87225097	71913566	109	13347										
SAMD9L	0	genome.wustl.edu	37	chr7	92764322	92764322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	caaatttgcatctgaatgtaGaaatacttatcattacatat	4	6	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	92764322	92764322	G	C	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.963	p.F321L	0.342	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	849	0	0	618	175	22.04	-	-	-	C	92764322	G	C	92764322	3	2	217	1	0	0	0	0	1	0	0	0	13913	933	33	2	3795	2	SAMD9L	7	92764322	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5539225	92764322	66374341	110	13348										
ZNF3	0	genome.wustl.edu	37	chr7	99669144	99669144	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ataagggttgagctcctgctGaaggccttcccacattcatt	9	11	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	99669144	99669144	G	A	SNP	ZNF3	ENST00000299667	human	ensembl	69_37n	-1	known	silent	c.963	p.F321	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526	141	0	0	147	33	18.33	-	-	-	A	99669144	G	A	99669144	2	1	217	1	0	0	0	0	0	0	0	1	17925	1281	45	2		2	ZNF3	7	99669144	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	6904822	99669144	59469519	111	13349										
ZCWPW1	0	genome.wustl.edu	37	chr7	100016761	100016761	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctcctgaagggacttctgcaGaacaatctggacaatctcct	8	12	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	7	100016761	100016761	G	C	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.334	p.L112V	1.000	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	113	0	0	221	61	21.63	-	-	-	C	100016761	G	C	100016761	3	2	217	1	0	0	0	0	1	0	0	0	17693	933	33	2	1668	2	ZCWPW1	7	100016761	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	347617	100016761	59121902	112	13350										
LONRF1	0	genome.wustl.edu	37	chr8	12598445	12598445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggctaagcactgaagaaagaGttgtaaggcatcacctaaaa	10	7	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	8	12598445	12598445	G	A	SNP	LONRF1	ENST00000398246	human	ensembl	69_37n	-1	known	missense	c.901	p.L301F	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359	361	0	0	437	59	11.9	-	-	-	A	12598445	G	A	12598445	3	1	217	1	0	0	0	0	1	0	0	0	8960	1029	36	4	1460	4	LONRF1	8	12598445	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		12598445	133765577	113	13351										
CHMP7	0	genome.wustl.edu	37	chr8	23116332	23116332	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aggcagagagcctcgtggatCagatccaagaggtacagaaa	13	8	1	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	8	23116332	23116332	C	G	SNP	CHMP7	ENST00000313219	human	ensembl	69_37n	1	known	missense	c.1048	p.Q350E	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP7	HGNC	ENSG00000147457	31	0	0	47	20	29.85	-	-	-	G	23116332	C	G	23116332	3	3	217	1	0	0	0	0	1	0	0	0	3390	827	29	2	1074	2	CHMP7	8	23116332	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	10517887	23116332	123247690	114	13352										
ESRP1	0	genome.wustl.edu	37	chr8	95654281	95654281	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agacgtcgaaagcctgtcctCggcgtcgcagctggaccaag	13	13	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	8	95654281	95654281	C	G	SNP	ESRP1	ENST00000433389	human	ensembl	69_37n	1	known	missense	c.230	p.S77W	0.407	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413	28	0	0	12	8	40	-	-	-	G	95654281	C	G	95654281	3	3	217	1	0	0	0	0	1	0	0	0	5295	893	31	3	236	3	ESRP1	8	95654281	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	72537949	95654281	50709741	115	13353										
RGS22	0	genome.wustl.edu	37	chr8	101020623	101020623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctttttataagcaatttggtCcgattttaccatctttgtcc	5	9	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	8	101020623	101020623	C	T	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.2341	p.D781N	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	254	0	0	223	93	29.43	-	-	-	T	101020623	C	T	101020623	3	4	217	1	0	0	0	0	1	0	0	0	13389	855	30	2	1505	2	RGS22	8	101020623	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5366342	101020623	45343399	116	13354										
MPDZ	0	genome.wustl.edu	37	chr9	13222437	13222437	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tttgatcagtttctttcaatCttccatctctatcaaggatg	5	9	6	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	13222437	13222437	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.542	p.R181K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	253	0	0	261	112	30.03	-	-	-	T	13222437	C	T	13222437	3	4	217	1	0	0	0	0	1	0	0	0	9794	913	32	2	5747	2	MPDZ	9	13222437	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		13222437	127990994	117	13355										
IFNK	0	genome.wustl.edu	37	chr9	27524397	27524397	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gagatccttatgggtatattCattgctggcaccctatccct	8	11	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	27524397	27524397	C	A	SNP	IFNK	ENST00000276943	human	ensembl	69_37n	1	known	missense	c.63	p.F21L	0.000	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNK	HGNC	ENSG00000147896	151	0	0	125	37	22.84	-	-	-	A	27524397	C	A	27524397	3	1	217	1	0	0	0	0	1	0	0	0	7605	825	29	2	65	2	IFNK	9	27524397	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	14301960	27524397	113689034	118	13356										
BAAT	0	genome.wustl.edu	37	chr9	104133644	104133644	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agctcggatatgcactggctCatcaacaagtgcactcacag	9	12	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	104133644	104133644	C	T	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	missense	c.43	p.E15K	1.000	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	204	1	0.49	206	69	25.09	-	-	-	T	104133644	C	T	104133644	3	4	217	1	0	0	0	0	1	0	0	0	1284	835	29	2	1225	2	BAAT	9	104133644	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	76609247	104133644	37079787	119	13357										
IKBKAP	0	genome.wustl.edu	37	chr9	111668605	111668605	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gacattgagctgtccatgctCttcatccatctcagaagaag	8	11	3	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	111668605	111668605	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.1621	p.E541K	0.004	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	285	0	0	314	129	29.12	-	-	-	T	111668605	C	T	111668605	3	4	217	1	0	0	0	0	1	0	0	0	7664	922	32	2	2473	2	IKBKAP	9	111668605	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	7534961	111668605	29544826	120	13358										
IKBKAP	0	genome.wustl.edu	37	chr9	111670591	111670591	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aattaagaacctacttgtatCtcttttccaaatgaggagtt	6	7	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	111670591	111670591	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.1454	p.R485K	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	113	0	0	145	43	22.87	-	-	-	T	111670591	C	T	111670591	3	4	217	1	0	0	0	0	1	0	0	0	7664	913	32	2	2644	2	IKBKAP	9	111670591	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1986	111670591	29542840	121	13359										
KIAA0368	0	genome.wustl.edu	37	chr9	114156470	114156470	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttgtgggtacttagcttcctGacaagggaaaggagccagat	13	7	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	9	114156470	114156470	G	C	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	silent	c.3426	p.V1142	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	48	0	0	75	17	18.48	-	-	-	C	114156470	G	C	114156470	2	2	217	1	0	0	0	0	0	0	0	1	8223	1277	45	2		2	KIAA0368	9	114156470	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2485879	114156470	27056961	122	13360										
OIT3	0	genome.wustl.edu	37	chr10	74692229	74692229	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaggagaggactcagccggtCtacagggccagacgctaaca	14	11	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	74692229	74692229	C	T	SNP	OIT3	ENST00000334011	human	ensembl	69_37n	1	known	silent	c.1585	p.L529	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	OIT3	HGNC	ENSG00000138315	59	0	0	63	27	30	-	-	-	T	74692229	C	T	74692229	2	4	217	1	0	0	0	0	0	0	0	1	10922	912	32	2		2	OIT3	10	74692229	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		74692229	60842518	123	13361										
TTC18	0	genome.wustl.edu	37	chr10	75113458	75113458	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagaaccacttgattgaattCtgctcgaataaaggtaactg	8	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	75113458	75113458	C	T	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	missense	c.106	p.E36K	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	159	0	0	176	78	30.71	-	-	-	T	75113458	C	T	75113458	3	4	217	1	0	0	0	0	1	0	0	0	16782	922	32	2	3363	2	TTC18	10	75113458	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	421229	75113458	60421289	124	13362										
AP3M1	0	genome.wustl.edu	37	chr10	75889680	75889680	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cttaccatgaaagaaagggaGagatcaggcattccagatag	11	7	1	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	75889680	75889680	G	C	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	silent	c.654	p.L218	0.998	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	116	0	0	112	34	23.29	-	-	-	C	75889680	G	C	75889680	2	2	217	1	0	0	0	0	0	0	0	1	748	929	33	2		2	AP3M1	10	75889680	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	776222	75889680	59645067	125	13363										
BLNK	0	genome.wustl.edu	37	chr10	97951825	97951825	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctatgttgatgattcctgatGatttcagcaacacttccaaa	6	9	1	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	97951825	97951825	G	A	SNP	BLNK	ENST00000224337	human	ensembl	69_37n	-1	known	silent	c.1275	p.I425	0.988	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	BLNK	HGNC	ENSG00000095585	217	0	0	241	80	24.92	-	-	-	A	97951825	G	A	97951825	2	1	217	1	0	0	0	0	0	0	0	1	1452	1280	45	2		2	BLNK	10	97951825	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	22062145	97951825	37582922	126	13364										
ZDHHC6	0	genome.wustl.edu	37	chr10	114205164	114205164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctttaattcttgtagattttCaaacttgataaccgaacaga	5	7	2	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	114205164	114205164	C	G	SNP	ZDHHC6	ENST00000369405	human	ensembl	69_37n	-1	known	missense	c.31	p.E11Q	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041	91	0	0	81	33	28.95	-	-	-	G	114205164	C	G	114205164	3	3	217	1	0	0	0	0	1	0	0	0	17715	835	29	2	1250	2	ZDHHC6	10	114205164	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	16253339	114205164	21329583	127	13365										
TACC2	0	genome.wustl.edu	37	chr10	123842796	123842796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgcagcccagcagggcacaGaaagctcagcggtcttggag	14	12	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	123842796	123842796	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.781	p.E261K	0.002	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	41	0	0	28	20	41.67	-	-	-	A	123842796	G	A	123842796	3	1	217	1	0	0	0	0	1	0	0	0	15594	943	33	2	791	2	TACC2	10	123842796	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	9637632	123842796	11691951	128	13366			2	30		5	5	3348	G		1.586334e-08
TACC2	0	genome.wustl.edu	37	chr10	123843603	123843603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gccatgaggtccaaccaggaGcaccaccccctcctcttccc	7	20	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	123843603	123843603	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.1588	p.A530T	0.018	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	127	0	0	85	29	25.44	-	-	-	A	123843603	G	A	123843603	3	1	217	1	0	0	0	0	1	0	0	0	15594	971	34	4	1598	4	TACC2	10	123843603	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	807	123843603	11691144	129	13367			2	30		5	5	3348	G		1.586334e-08
TACC2	0	genome.wustl.edu	37	chr10	123844256	123844256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acattggaaataaggaagatGggcagctgtgatggggaggg	18	3	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	123844256	123844256	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.2241	p.M747I	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	79	0	0	46	18	28.12	-	-	-	A	123844256	G	A	123844256	3	1	217	1	0	0	0	0	1	0	0	0	15594	1348	47	4	2251	4	TACC2	10	123844256	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	653	123844256	11690491	130	13368			2	30		5	5	3348	G		1.586334e-08
TACC2	0	genome.wustl.edu	37	chr10	123844803	123844803	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gggagagttctctgacagaaGagtcagaattgtcagcacca	12	8	3	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	123844803	123844803	G	C	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.2788	p.E930Q	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	107	0	0	56	29	34.12	-	-	-	C	123844803	G	C	123844803	3	2	217	1	0	0	0	0	1	0	0	0	15594	943	33	2	2798	2	TACC2	10	123844803	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	547	123844803	11689944	131	13369			2	30		5	5	3348	G		1.586334e-08
TACC2	0	genome.wustl.edu	37	chr10	123846143	123846143	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acagagggcagcatggagagGatgggagagccttcccagga	17	8	0	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	123846143	123846143	G	C	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.4128	p.R1376S	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	42	0	0	30	15	33.33	-	-	-	C	123846143	G	C	123846143	3	2	217	1	0	0	0	0	1	0	0	0	15594	1165	41	2	4138	2	TACC2	10	123846143	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1340	123846143	11688604	132	13370			2	30		5	5	3348	G		1.586334e-08
DMBT1	0	genome.wustl.edu	37	chr10	124351025	124351025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaccatcacgttacctccatCgacagtaggtaaataatcct	6	12	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	124351025	124351025	C	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.2168	p.S723L	0.000	NULL	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	470	0	0	382	182	32.27	-	-	-	T	124351025	C	T	124351025	3	4	217	1	0	0	0	0	1	0	0	0	4613	893	31	1	2242	1	DMBT1	10	124351025	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	504882	124351025	11183722	133	13371										
BCCIP	0	genome.wustl.edu	37	chr10	127519144	127519144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaaatagcaaacggatgtttCagaagacagcaatgatgata	9	5	1	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	10	127519144	127519144	C	T	SNP	BCCIP	ENST00000368759	human	ensembl	69_37n	1	known	missense	c.335	p.S112L	1.000	NULL	NULL	-	no_errors	BCCIP	HGNC	ENSG00000107949	221	0	0	205	57	21.76	-	-	-	T	127519144	C	T	127519144	3	4	217	1	0	0	0	0	1	0	0	0	1360	838	29	2	349	2	BCCIP	10	127519144	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3168119	127519144	8015603	134	13372										
CKAP5	0	genome.wustl.edu	37	chr11	46772688	46772688	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tattcgagatgctcccttttCtgtttccttatcagacttgc	6	11	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	46772688	46772688	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.5461	p.E1821K	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	182	0	0	257	88	25.51	-	-	-	T	46772688	C	T	46772688	3	4	217	1	0	0	0	0	1	0	0	0	3475	922	32	2	678	2	CKAP5	11	46772688	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		46772688	88233828	135	13373										
OR4C13	0	genome.wustl.edu	37	chr11	49974337	49974337	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtaatggcctatgaccactaTgtggccatctgcaagccctt	9	12	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	49974337	49974337	T	C	SNP	OR4C13	ENST00000555099	human	ensembl	69_37n	1	known	silent	c.363	p.Y121	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C13	HGNC	ENSG00000258817	543	0	0	540	182	25.14	-	-	-	C	49974337	T	C	49974337	2	2	217	1	0	0	0	0	0	0	0	1	11120	1471	51	5		5	OR4C13	11	49974337	Silent	SNP	T	TCGA-A8-A09G-01A-21W-A019-09	3201649	49974337	85032179	136	13374										
OR5D13	0	genome.wustl.edu	37	chr11	55540972	55540972	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttttattctcttgggtttttCagaatacccagaaatccagg	7	8	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	55540972	55540972	C	G	SNP	OR5D13	ENST00000361760	human	ensembl	69_37n	1	known	nonsense	c.59	p.S20*	0.959	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877	530	0	0	466	165	26.15	-	-	-	G	55540972	C	G	55540972	4	3	217	1	0	0	0	0	0	1	0	0	11227	838	29	2	61	2	OR5D13	11	55540972	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	5566635	55540972	79465544	137	13375										
SLC22A20	0	genome.wustl.edu	37	chr11	65004310	65004310	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggccgtctgcgtcctgaccGagacccgcaacatgcccctg	11	17	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	65004310	65004310	G	A	SNP	SLC22A20	ENST00000525437	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847	40	0	0	34	12	26.09	-	-	-	A	65004310	G	A	65004310	1	1	217	0	1	0	0	0	0	0	0	0	14541	1073	37	1		1	SLC22A20	11	65004310	RNA	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	9463338	65004310	70002206	138	13376										
SPTBN2	0	genome.wustl.edu	37	chr11	66468703	66468703	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agttctggatgctcagggctGaggtgagagctgccttcttg	15	8	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	66468703	66468703	G	C	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	nonsense	c.2867	p.S956*	0.989	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	15	0	0	14	6	30	-	-	-	C	66468703	G	C	66468703	4	2	217	1	0	0	0	0	0	1	0	0	15211	1294	45	2	4393	2	SPTBN2	11	66468703	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1464393	66468703	68537813	139	13377										
ALDH3B1	0	genome.wustl.edu	37	chr11	67793545	67793545	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aacgacggcttcatgcacatGaccctggccagcctgccttt	9	15	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	67793545	67793545	G	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	12	0	0	10	5	33.33	-	-	-	C	67793545	G	C	67793545	1	2	217	0	1	0	0	0	0	0	0	0	499	1290	45	2		2	ALDH3B1	11	67793545	RNA	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1324842	67793545	67212971	140	13378										
ARAP1	0	genome.wustl.edu	37	chr11	72410547	72410547	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggtcactgcccgctcattctCaaagtagctcaggaccccgt	9	15	4	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	72410547	72410547	C	G	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.2353	p.E785Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	17	0	0	6	6	50	-	-	-	G	72410547	C	G	72410547	3	3	217	1	0	0	0	0	1	0	0	0	840	835	29	2	2075	2	ARAP1	11	72410547	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	4617002	72410547	62595969	141	13379										
MMP10	0	genome.wustl.edu	37	chr11	102650299	102650299	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggagctgaagtgaccaacgtCaggaactccacacctgggct	12	12	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	102650299	102650299	C	G	SNP	MMP10	ENST00000279441	human	ensembl	69_37n	-1	known	missense	c.283	p.D95H	0.984	pirsf_Pept_M10A_matrix_strom,superfamily_Peptidoglycan-bd-like,prints_Pept_M10A_matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP10	HGNC	ENSG00000166670	167	0	0	152	66	30.28	-	-	-	G	102650299	C	G	102650299	3	3	217	1	0	0	0	0	1	0	0	0	9720	826	29	2	1183	2	MMP10	11	102650299	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	30239752	102650299	32356217	142	13380										
VWA5A	0	genome.wustl.edu	37	chr11	123994096	123994096	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acactgattttgctgctgaaGagtttacctataggctgtta	9	7	0	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	11	123994096	123994096	G	A	SNP	VWA5A	ENST00000392748	human	ensembl	69_37n	1	known	silent	c.954	p.K318	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002	214	0	0	162	66	28.95	-	-	-	A	123994096	G	A	123994096	2	1	217	1	0	0	0	0	0	0	0	1	17339	933	33	2		2	VWA5A	11	123994096	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	21343797	123994096	11012420	143	13381										
CACNA1C	0	genome.wustl.edu	37	chr12	2743501	2743501	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggaatacatttgacgccttGattgttgtgggtagcattgt	12	5	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	2743501	2743501	G	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.3867	p.L1289F	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	33	0	0	13	5	27.78	-	-	-	T	2743501	G	T	2743501	3	4	217	1	0	0	0	0	1	0	0	0	2565	1281	45	2	4245	2	CACNA1C	12	2743501	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		2743501	131108394	144	13382										
KLRK1	0	genome.wustl.edu	37	chr12	10531194	10531194	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tttcagaaggctggcattttGagacatacaagaagcctggc	11	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	10531194	10531194	G	C	SNP	KLRK1	ENST00000240618	human	ensembl	69_37n	-1	known	missense	c.388	p.Q130E	0.033	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRK1	HGNC	ENSG00000213809	257	0	0	404	63	13.49	-	-	-	C	10531194	G	C	10531194	3	2	217	1	0	0	0	0	1	0	0	0	8476	1299	45	2	274	2	KLRK1	12	10531194	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	7787693	10531194	123320701	145	13383										
PRR4	0	genome.wustl.edu	37	chr12	11001988	11001988	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tttaccattatctgtgctctGagctgagctcagagccagaa	9	10	3	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	11001988	11001988	G	C	SNP	PRR4	ENST00000228811	human	ensembl	69_37n	-1	known	missense	c.49	p.Q17E	0.652	NULL	NULL	-	no_errors	PRR4	HGNC	ENSG00000111215	53	0	0	115	27	19.01	-	-	-	C	11001988	G	C	11001988	3	2	217	1	0	0	0	0	1	0	0	0	12679	1299	45	2	367	2	PRR4	12	11001988	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	470794	11001988	122849907	146	13384										
DUSP16	0	genome.wustl.edu	37	chr12	12630056	12630056	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cactgcctccgtagatggctGaggcagagtagaagtgtgag	15	8	0	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	12630056	12630056	G	C	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	nonsense	c.1709	p.S570*	0.760	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	171	0	0	31	32	50.79	-	-	-	C	12630056	G	C	12630056	4	2	217	1	0	0	0	0	0	1	0	0	4851	1294	45	2	292	2	DUSP16	12	12630056	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1628068	12630056	121221839	147	13385										
DUSP16	0	genome.wustl.edu	37	chr12	12630252	12630252	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtcctccacgctcccacttcGatgcagtggagataaaaggg	11	12	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	12630252	12630252	G	A	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	nonsense	c.1513	p.R505*	0.501	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	126	0	0	30	25	45.45	-	-	-	A	12630252	G	A	12630252	4	1	217	1	0	0	0	0	0	1	0	0	4851	1066	37	1	488	1	DUSP16	12	12630252	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	196	12630252	121221643	148	13386										
KRT18	0	genome.wustl.edu	37	chr12	53343222	53343222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agaccatgcaaagcctgaacGaccgcctggcctcttacctg	9	15	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	53343222	53343222	G	A	SNP	KRT18	ENST00000388835	human	ensembl	69_37n	1	known	missense	c.265	p.D89N	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	36	0	0	25	9	26.47	-	-	-	A	53343222	G	A	53343222	3	1	217	1	0	0	0	0	1	0	0	0	8508	1058	37	1	267	1	KRT18	12	53343222	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	40712970	53343222	80508673	149	13387										
ERBB3	0	genome.wustl.edu	37	chr12	56490928	56490928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttgtcactcaatatttgcctCtgggttctctgctggatcat	8	10	5	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	56490928	56490928	C	G	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.2374	p.L792V	0.999	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	66	0	0	95	34	26.36	-	-	-	G	56490928	C	G	56490928	3	3	217	1	0	0	0	0	1	0	0	0	5245	912	32	2	2583	2	ERBB3	12	56490928	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3147706	56490928	77360967	150	13388										
CPSF6	0	genome.wustl.edu	37	chr12	69656161	69656161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcttttagaagacgtgaacGatcaagagagagggaccata	11	6	2	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	69656161	69656161	G	A	SNP	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	missense	c.1589	p.R530Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	113	0	0	150	33	18.03	-	-	-	A	69656161	G	A	69656161	3	1	217	1	0	0	0	0	1	0	0	0	3859	1058	37	1	1512	1	CPSF6	12	69656161	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	13165233	69656161	64195734	151	13389										
ATP2B1	0	genome.wustl.edu	37	chr12	90003786	90003786	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcaccagttacagctacaacCtggcgttggtctgagacagt	10	11	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	90003786	90003786	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	silent	c.2370	p.Q790	1.000	pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	318	0	0	340	136	28.57	-	-	-	T	90003786	C	T	90003786	2	4	217	1	0	0	0	0	0	0	0	1	1143	680	24	4		4	ATP2B1	12	90003786	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	20347625	90003786	43848109	152	13390										
SPIC	0	genome.wustl.edu	37	chr12	101876615	101876615	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaggaaatattcatcaatctCtgcagaacataactgaaaac	5	8	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	101876615	101876615	C	G	SNP	SPIC	ENST00000299272	human	ensembl	69_37n	1	known	missense	c.256	p.L86V	0.978	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPIC	HGNC	ENSG00000166211	337	0	0	459	71	13.37	-	-	-	G	101876615	C	G	101876615	3	3	217	1	0	0	0	0	1	0	0	0	15142	912	32	2	264	2	SPIC	12	101876615	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	11872829	101876615	31975280	153	13391										
CCDC62	0	genome.wustl.edu	37	chr12	123290727	123290727	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgccatccaagattcccactCtttgggttcttcaaaatctg	6	12	4	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	123290727	123290727	C	T	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	missense	c.1736	p.S579F	0.010	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	165	0	0	198	105	34.65	-	-	-	T	123290727	C	T	123290727	3	4	217	1	0	0	0	0	1	0	0	0	2860	913	32	2	1774	2	CCDC62	12	123290727	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	21414112	123290727	10561168	154	13392										
GOLGA3	0	genome.wustl.edu	37	chr12	133384794	133384794	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcagtgtcgggggacaggctGatctcagacacaacggacgc	14	11	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	12	133384794	133384794	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	silent	c.861	p.I287	0.998	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	68	0	0	46	30	39.47	-	-	-	A	133384794	G	A	133384794	2	1	217	1	0	0	0	0	0	0	0	1	6606	1280	45	2		2	GOLGA3	12	133384794	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	10094067	133384794	467101	155	13393										
ABCC4	0	genome.wustl.edu	37	chr13	95899945	95899945	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agcggtcttctggcagcactGaatacatatcatcttcctct	7	12	5	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	13	95899945	95899945	G	A	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.137	p.S46L	0.298	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	113	0	0	93	67	41.61	-	-	-	A	95899945	G	A	95899945	3	1	217	1	0	0	0	0	1	0	0	0	55	1294	45	2	4009	2	ABCC4	13	95899945	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		95899945	19269933	156	13394										
RNASE9	0	genome.wustl.edu	37	chr14	21024983	21024983	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cccatgatttcatggttacaGtactctatatgatttagtgg	8	7	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	21024983	21024983	G	T	SNP	RNASE9	ENST00000338904	human	ensembl	69_37n	-1	known	nonsense	c.246	p.Y82*	0.002	pfam_RNaseA_domain,superfamily_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE9	HGNC	ENSG00000188655	330	0	0	362	146	28.68	-	-	-	T	21024983	G	T	21024983	4	4	217	1	0	0	0	0	0	1	0	0	13496	1024	36	4	375	4	RNASE9	14	21024983	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		21024983	86324557	157	13395										
MYH7	0	genome.wustl.edu	37	chr14	23884898	23884898	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agctcctgctccgccagcttCcgggaccgctctgtctgctc	10	18	2	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	23884898	23884898	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	silent	c.5097	p.R1699	0.999	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	49	0	0	61	10	14.08	-	-	-	T	23884898	C	T	23884898	2	4	217	1	0	0	0	0	0	0	0	1	10111	842	30	2		2	MYH7	14	23884898	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2859915	23884898	83464642	158	13396										
EIF2B2	0	genome.wustl.edu	37	chr14	75470270	75470270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	atagactccatggacgcagcGacgagagtgatcagcaggag	14	9	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	75470270	75470270	G	A	SNP	EIF2B2	ENST00000266126	human	ensembl	69_37n	1	known	missense	c.301	p.D101N	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718	79	0	0	64	34	34.69	-	-	-	A	75470270	G	A	75470270	3	1	217	1	0	0	0	0	1	0	0	0	5036	1058	37	1	311	1	EIF2B2	14	75470270	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	51585372	75470270	31879270	159	13397										
ALKBH1	0	genome.wustl.edu	37	chr14	78140379	78140379	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acaaggctctaccattgaatCtctcgggaggacagcaggga	12	10	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	78140379	78140379	C	G	SNP	ALKBH1	ENST00000216489	human	ensembl	69_37n	-1	known	missense	c.946	p.D316H	0.001	NULL	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601	92	0	0	156	50	24.15	-	-	-	G	78140379	C	G	78140379	3	3	217	1	0	0	0	0	1	0	0	0	526	913	32	2	227	2	ALKBH1	14	78140379	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2670109	78140379	29209161	160	13398										
DIO2	0	genome.wustl.edu	37	chr14	80677773	80677773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gttggagaaaaaaactggcaGaatttgcagtgtgatcagca	12	5	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	80677773	80677773	G	A	SNP	DIO2	ENST00000422005	human	ensembl	69_37n	-1	known	silent	c.43	p.L15	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448	37	0	0	36	13	26.53	-	-	-	A	80677773	G	A	80677773	2	1	217	1	0	0	0	0	0	0	0	1	4561	933	33	2		2	DIO2	14	80677773	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2537394	80677773	26671767	161	13399										
TRIP11	0	genome.wustl.edu	37	chr14	92465767	92465767	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aacgaaattctttgtcacgtAaacgttgaacctaggtagag	9	7	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	92465767	92465767	A	G	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.4709	p.L1570S	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	135	0	0	163	62	27.56	-	-	-	G	92465767	A	G	92465767	3	3	217	1	0	0	0	0	1	0	0	0	16651	372	13	5	1266	5	TRIP11	14	92465767	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	11787994	92465767	14883773	162	13400										
SERPINA5	0	genome.wustl.edu	37	chr14	95053915	95053915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcttctcccctgtgagcatCtccatgagcctggccatgct	8	15	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	14	95053915	95053915	C	G	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	1	known	missense	c.216	p.I72M	0.337	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	160	0	0	149	51	25.37	-	-	-	G	95053915	C	G	95053915	3	3	217	1	0	0	0	0	1	0	0	0	14180	903	32	2	218	2	SERPINA5	14	95053915	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2588148	95053915	12295625	163	13401										
GABRG3	0	genome.wustl.edu	37	chr15	27725853	27725853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aaaaaattcagtggaggcagCtgaccagaaatcatggcggc	12	8	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	27725853	27725853	C	T	SNP	GABRG3	ENST00000333743	human	ensembl	69_37n	1	known	missense	c.632	p.A211V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	171	0	0	141	60	29.85	-	-	-	T	27725853	C	T	27725853	3	4	217	1	0	0	0	0	1	0	0	0	6222	797	28	4	654	4	GABRG3	15	27725853	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		27725853	74805539	164	13402										
DISP2	0	genome.wustl.edu	37	chr15	40659881	40659881	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gctgctgggggtgctgggctCactgctggtggccttcttcc	16	12	2	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	40659881	40659881	C	G	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	nonsense	c.1568	p.S523*	1.000	pfscan_SSD	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	55	0	0	24	10	29.41	-	-	-	G	40659881	C	G	40659881	4	3	217	1	0	0	0	0	0	1	0	0	4576	838	29	2	1598	2	DISP2	15	40659881	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	12934028	40659881	61871511	165	13403										
NUSAP1	0	genome.wustl.edu	37	chr15	41663884	41663885	+	Splice_Site	INS	-	-	A													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cggggaattctgctgctggtINSaaaaaaaaaaaaaaacaaaa							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	41663884	41663885	0	A	INS	NUSAP1	ENST00000559596	human	ensembl	69_37n	1	known	splice_site_ins	c.1006+2_1006+1	e8+2	0.991:0.187	-	-	-	no_errors	NUSAP1	HGNC	ENSG00000137804	33	0	0	80	9	10.11	-	-	-	A	41663885	-	A	41663884	8	5	217	1	0	1	1	0	0	0	1	0	10851	1652	57	0	1038	0	NUSAP1	15	41663884	Splice_Site	INS	-	TCGA-A8-A09G-01A-21W-A019-09	1004003	41663884	60867508	166	13404										
SLC30A4	0	genome.wustl.edu	37	chr15	45778900	45778900	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tatacatcttctattttcatCaaggcttctttgatatagtc	4	8	5	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	45778900	45778900	C	G	SNP	SLC30A4	ENST00000261867	human	ensembl	69_37n	-1	known	missense	c.1044	p.L348F	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154	323	0	0	437	161	26.88	-	-	-	G	45778900	C	G	45778900	3	3	217	1	0	0	0	0	1	0	0	0	14646	825	29	2	253	2	SLC30A4	15	45778900	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	4115016	45778900	56752492	167	13405										
GCOM1	0	genome.wustl.edu	37	chr15	57931737	57931737	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aagaaagtcaagcagatggtCgaggaggtaagcatctgcaa	13	6	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	57931737	57931737	C	T	SNP	GCOM1	ENST00000380569	human	ensembl	69_37n	1	known	silent	c.1113	p.V371	0.954	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878	40	0	0	42	18	30	-	-	-	T	57931737	C	T	57931737	2	4	217	1	0	0	0	0	0	0	0	1	6355	871	31	1		1	GCOM1	15	57931737	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	12152837	57931737	44599655	168	13406										
TLN2	0	genome.wustl.edu	37	chr15	62990048	62990048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	catggttgggcagatgcaccGaggccacatgccgccactgg	14	13	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	15	62990048	62990048	G	A	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.1454	p.R485Q	0.986	NULL	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	38	0	0	18	8	30.77	-	-	-	A	62990048	G	A	62990048	3	1	217	1	0	0	0	0	1	0	0	0	16043	1058	37	1	1500	1	TLN2	15	62990048	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5058311	62990048	39541344	169	13407										
THOC6	0	genome.wustl.edu	37	chr16	3075810	3075810	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gctggcaacaattacgggcaGattgccatcttcaggtaccc	10	12	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	3075810	3075810	G	A	SNP	THOC6	ENST00000326266	human	ensembl	69_37n	1	known	silent	c.141	p.Q47	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	THOC6	HGNC	ENSG00000131652	50	0	0	19	6	24	-	-	-	A	3075810	G	A	3075810	2	1	217	1	0	0	0	0	0	0	0	1	15964	933	33	2		2	THOC6	16	3075810	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		3075810	87278943	170	13408										
PLK1	0	genome.wustl.edu	37	chr16	23692315	23692315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggactcctaattacatagctCccgaggtgctgagcaagaaa	10	10	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	23692315	23692315	C	G	SNP	PLK1	ENST00000300093	human	ensembl	69_37n	1	known	missense	c.658	p.P220A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK1	HGNC	ENSG00000166851	201	0	0	143	63	30.58	-	-	-	G	23692315	C	G	23692315	3	3	217	1	0	0	0	0	1	0	0	0	12168	855	30	2	668	2	PLK1	16	23692315	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	20616505	23692315	66662438	171	13409										
SEZ6L2	0	genome.wustl.edu	37	chr16	29907123	29907123	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agggtgcggctgacggggctCcccagatctggagactccac	15	13	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	29907123	29907123	C	A	SNP	SEZ6L2	ENST00000308713	human	ensembl	69_37n	-1	known	silent	c.570	p.G190	0.388	superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938	43	0	0	54	16	22.86	-	-	-	A	29907123	C	A	29907123	2	1	217	1	0	0	0	0	0	0	0	1	14232	842	30	2		2	SEZ6L2	16	29907123	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	6214808	29907123	60447630	172	13410										
SRCAP	0	genome.wustl.edu	37	chr16	30747578	30747578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagccacccaggccaaggctGaacaggtggctgagcttgca	13	13	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	30747578	30747578	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.6787	p.E2263K	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	52	0	0	80	20	20	-	-	-	A	30747578	G	A	30747578	3	1	217	1	0	0	0	0	1	0	0	0	15226	1291	45	2	6905	2	SRCAP	16	30747578	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	840455	30747578	59607175	173	13411										
ITGAX	0	genome.wustl.edu	37	chr16	31374515	31374515	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggtggtgtgatgctgttctCtacggggagcagggccaccc	16	10	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	31374515	31374515	C	G	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.1530	p.L510	0.927	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	56	0	0	58	16	21.62	-	-	-	G	31374515	C	G	31374515	2	3	217	1	0	0	0	0	0	0	0	1	7943	900	32	2		2	ITGAX	16	31374515	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	626937	31374515	58980238	174	13412										
ZFHX3	0	genome.wustl.edu	37	chr16	72923839	72923839	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agcagctctcaccttctacaCcactctcatgctgctgcagg	7	16	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	16	72923839	72923839	C	G	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.3239	p.G1080A	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	99	0	0	70	41	36.94	-	-	-	G	72923839	C	G	72923839	3	3	217	1	0	0	0	0	1	0	0	0	17730	507	18	4	7900	4	ZFHX3	16	72923839	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	41549324	72923839	17430914	175	13413										
ABR	0	genome.wustl.edu	37	chr17	959301	959301	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	attgcttaaatcccttggcaGagtggacgatgacatgaagg	12	7	0	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	959301	959301	G	A	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.1535	p.S512F	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	53	0	0	41	17	29.31	-	-	-	A	959301	G	A	959301	3	1	217	1	0	0	0	0	1	0	0	0	99	942	33	2	1084	2	ABR	17	959301	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		959301	80235909	176	13414										
NLGN2	0	genome.wustl.edu	37	chr17	7319011	7319011	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgtgtctgccagcgcctttGacttcactgtctccaacttt	8	13	3	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	7319011	7319011	G	C	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.1219	p.D407H	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	85	0	0	38	21	35.59	-	-	-	C	7319011	G	C	7319011	3	2	217	1	0	0	0	0	1	0	0	0	10534	1290	45	2	1241	2	NLGN2	17	7319011	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	6359710	7319011	73876199	177	13415										
NCOR1	0	genome.wustl.edu	37	chr17	16029456	16029457	+	Frame_Shift_Ins	INS	-	-	T													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttcttcttcttttttttctgINSttttttctgctttatcctct							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	16029456	16029457	-	T	INS	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1574_1573	p.T525fs	1.000:1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	93	0	0	91	35	27.78	-	-	-	T	16029457	-	T	16029456	7	5	217	1	0	1	1	0	0	0	0	0	10307	1377	48	0	5876	0	NCOR1	17	16029456	Frame_Shift_Ins	INS	-	TCGA-A8-A09G-01A-21W-A019-09	8710445	16029456	65165754	178	13416										
RHOT1	0	genome.wustl.edu	37	chr17	30503029	30503029	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttaacaacaagcattctattGataaggtaggtgtgatcttt	8	5	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	30503029	30503029	G	A	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	missense	c.271	p.D91N	1.000	pfam_MIRO-like,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_Miro,tigrfam_Small_GTP-bd_dom	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	108	0	0	64	34	34.69	-	-	-	A	30503029	G	A	30503029	3	1	217	1	0	0	0	0	1	0	0	0	13427	1290	45	2	289	2	RHOT1	17	30503029	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	14473573	30503029	50692181	179	13417										
RPL19	0	genome.wustl.edu	37	chr17	37359326	37359326	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gattttgcgccggctgctcaGaagataccgtgaatctaaga	11	9	2	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	37359326	37359326	G	A	SNP	RPL19	ENST00000225430	human	ensembl	69_37n	1	known	missense	c.320	p.R107K	1.000	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	-	no_errors	RPL19	HGNC	ENSG00000108298	113	0	0	57	16	21.92	-	-	-	A	37359326	G	A	37359326	3	1	217	1	0	0	0	0	1	0	0	0	13652	942	33	2	334	2	RPL19	17	37359326	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	6856297	37359326	43835884	180	13418										
TUBG2	0	genome.wustl.edu	37	chr17	40811929	40811929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcgtggaggaattcgccaccGagggcactgaccgcaaggac	14	12	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	40811929	40811929	G	A	SNP	TUBG2	ENST00000251412	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042	44	0	0	73	13	15.12	-	-	-	A	40811929	G	A	40811929	3	1	217	1	0	0	0	0	1	0	0	0	16862	1059	37	1	133	1	TUBG2	17	40811929	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	3452603	40811929	40383281	181	13419										
MEOX1	0	genome.wustl.edu	37	chr17	41738538	41738538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctcctgtggtgtccaccaggCccaggctgctggtccccatt	11	16	0	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	41738538	41738538	C	T	SNP	MEOX1	ENST00000318579	human	ensembl	69_37n	-1	known	missense	c.365	p.G122D	0.996	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX1	HGNC	ENSG00000005102	38	0	0	11	23	67.65	-	-	-	T	41738538	C	T	41738538	3	4	217	1	0	0	0	0	1	0	0	0	9544	739	26	4	411	4	MEOX1	17	41738538	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	926609	41738538	39456672	182	13420										
GFAP	0	genome.wustl.edu	37	chr17	42990641	42990641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ccacaggcagggctaccttgGagcggtaccactcttcggct	12	14	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	42990641	42990641	G	A	SNP	GFAP	ENST00000253408	human	ensembl	69_37n	-1	known	missense	c.776	p.S259F	1.000	pfam_F	pfam_F	-	no_errors	GFAP	HGNC	ENSG00000131095	75	0	0	36	10	21.74	-	-	-	A	42990641	G	A	42990641	3	1	217	1	0	0	0	0	1	0	0	0	6389	1174	41	2	675	2	GFAP	17	42990641	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1252103	42990641	38204569	183	13421										
MED13	0	genome.wustl.edu	37	chr17	60043906	60043906	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagctgcctgagaaaaccatTctgctaccaacttttctgat	6	12	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	60043906	60043906	T	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.4298	p.E1433V	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	156	0	0	185	73	28.29	-	-	-	A	60043906	T	A	60043906	3	1	217	1	0	0	0	0	1	0	0	0	9501	1783	62	5	2274	5	MED13	17	60043906	Missense_Mutation	SNP	T	TCGA-A8-A09G-01A-21W-A019-09	17053265	60043906	21151304	184	13422										
KCNH6	0	genome.wustl.edu	37	chr17	61622443	61622443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gggttctgtctggcaggctgGagtcccgcgtgtcctcagac	15	12	3	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	61622443	61622443	G	C	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.2509	p.E837Q	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	50	0	0	27	6	18.18	-	-	-	C	61622443	G	C	61622443	3	2	217	1	0	0	0	0	1	0	0	0	8090	1175	41	2	2559	2	KCNH6	17	61622443	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1578537	61622443	19572767	185	13423										
RNF213	0	genome.wustl.edu	37	chr17	78318546	78318546	+	Frame_Shift_Del	DEL	G	G	-													0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acctgcaggcctcccaaagaGgtgatagacatggagctgag							TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	78318546	78318546	G	-	DEL	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	frame_shift_del	c.6411	p.V2138fs	0.879	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	166	0	0	97	39	28.06	-	-	-	-	78318546	G	-	78318546	7	5	217	1	0	1	0	1	0	0	0	0	13563	991	35	0	6840	0	RNF213	17	78318546	Frame_Shift_Del	DEL	G	TCGA-A8-A09G-01A-21W-A019-09	16696103	78318546	2876664	186	13424										
NPTX1	0	genome.wustl.edu	37	chr17	78447148	78447148	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgcagacagtgaaggcgtacAtctctggcaggctcttcttc	11	11	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	78447148	78447148	A	T	SNP	NPTX1	ENST00000306773	human	ensembl	69_37n	-1	known	missense	c.749	p.M250K	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246	24	0	0	10	6	37.5	-	-	-	T	78447148	A	T	78447148	3	4	217	1	0	0	0	0	1	0	0	0	10675	217	8	5	561	5	NPTX1	17	78447148	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	128602	78447148	2748062	187	13425										
CCDC137	0	genome.wustl.edu	37	chr17	79634810	79634810	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aagaaccaggacgaacaggaGattcctttccggctccggga	12	11	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	17	79634810	79634810	G	C	SNP	CCDC137	ENST00000329214	human	ensembl	69_37n	1	known	missense	c.186	p.E62D	0.993	NULL	NULL	-	no_errors	CCDC137	HGNC	ENSG00000185298	8	0	0	13	11	45.83	-	-	-	C	79634810	G	C	79634810	3	2	217	1	0	0	0	0	1	0	0	0	2796	933	33	2	192	2	CCDC137	17	79634810	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	1187662	79634810	1560400	188	13426										
IMPACT	0	genome.wustl.edu	37	chr18	22007922	22007922	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tggcagccatttatggcgagGagtggtgtgtcattgatgac	15	6	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	18	22007922	22007922	G	C	SNP	IMPACT	ENST00000284202	human	ensembl	69_37n	1	known	missense	c.76	p.E26Q	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059	250	0	0	123	41	24.7	-	-	-	C	22007922	G	C	22007922	3	2	217	1	0	0	0	0	1	0	0	0	7778	1175	41	2	82	2	IMPACT	18	22007922	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		22007922	56069326	189	13427										
DSEL	0	genome.wustl.edu	37	chr18	65179785	65179785	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aatctgcagctggagacattGatatatggcccataaaagac	9	8	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	18	65179785	65179785	G	A	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	silent	c.2091	p.I697	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	185	0	0	47	36	43.37	-	-	-	A	65179785	G	A	65179785	2	1	217	1	0	0	0	0	0	0	0	1	4810	1280	45	2		2	DSEL	18	65179785	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	43171863	65179785	12897463	190	13428										
TICAM1	0	genome.wustl.edu	37	chr19	4817009	4817009	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtgcaggctcaggcgacagtCgaagttggaggtgagaagta	17	6	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	4817009	4817009	C	G	SNP	TICAM1	ENST00000248244	human	ensembl	69_37n	-1	known	missense	c.1381	p.D461H	0.075	pirsf_Tol-interleuk_rcpt_adapt_Ticam	superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Ticam	-	no_errors	TICAM1	HGNC	ENSG00000127666	19	0	0	13	6	31.58	-	-	-	G	4817009	C	G	4817009	3	3	217	1	0	0	0	0	1	0	0	0	15987	884	31	3	761	3	TICAM1	19	4817009	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		4817009	54311974	191	13429										
C19orf59	0	genome.wustl.edu	37	chr19	7743274	7743274	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agctgctgggctttaaaaggGagctttggaatggtgagcgg	17	5	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	7743274	7743274	G	C	SNP	C19orf59	ENST00000333598	human	ensembl	69_37n	1	known	missense	c.361	p.E121Q	0.084	NULL	NULL	-	no_errors	C19orf59	HGNC	ENSG00000183019	194	0	0	106	19	15.2	-	-	-	C	7743274	G	C	7743274	3	2	217	1	0	0	0	0	1	0	0	0	1958	1175	41	2	375	2	C19orf59	19	7743274	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2926265	7743274	51385709	192	13430										
MUC16	0	genome.wustl.edu	37	chr19	9026209	9026209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	accagaccctgcaggacactCtccatggtgttgaacttcct	8	14	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	9026209	9026209	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.36777	p.E12259D	0.003	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	553	1	0.18	511	252	32.94	-	-	-	G	9026209	C	G	9026209	3	3	217	1	0	0	0	0	1	0	0	0	10045	912	32	2	7030	2	MUC16	19	9026209	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1282935	9026209	50102774	193	13431										
MUC16	0	genome.wustl.edu	37	chr19	9048939	9048939	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctctggttcaccaggagaaaGagtcagaattggaatagttg	12	6	3	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	9048939	9048939	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.32692	p.L10898V	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	893	1	0.11	840	425	33.49	-	-	-	C	9048939	G	C	9048939	3	2	217	1	0	0	0	0	1	0	0	0	10045	942	33	2	11151	2	MUC16	19	9048939	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	22730	9048939	50080044	194	13432										
MUC16	0	genome.wustl.edu	37	chr19	9064816	9064816	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agaggtgctggtctccctcaAtctggtggtcagtgaggaag	15	8	4	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	9064816	9064816	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.22630	p.L7544	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	277	0	0	358	189	34.55	-	-	-	G	9064816	A	G	9064816	2	3	217	1	0	0	0	0	0	0	0	1	10045	98	4	5		5	MUC16	19	9064816	Silent	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	15877	9064816	50064167	195	13433										
SYDE1	0	genome.wustl.edu	37	chr19	15224573	15224573	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgccctgtgggcgggatttCctgtccgggccagactacga	14	13	0	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	15224573	15224573	C	A	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	missense	c.2007	p.F669L	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	78	0	0	23	7	23.33	-	-	-	A	15224573	C	A	15224573	3	1	217	1	0	0	0	0	1	0	0	0	15527	854	30	2	2037	2	SYDE1	19	15224573	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	6159757	15224573	43904410	196	13434										
TMEM38A	0	genome.wustl.edu	37	chr19	16799102	16799102	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gcggtggtgggccaggagctCagcattcggccatgcccgcc	16	14	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	16799102	16799102	C	T	SNP	TMEM38A	ENST00000187762	human	ensembl	69_37n	1	known	nonsense	c.820	p.Q274*	0.002	NULL	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954	87	0	0	95	23	19.49	-	-	-	T	16799102	C	T	16799102	4	4	217	1	0	0	0	0	0	1	0	0	16254	827	29	2	842	2	TMEM38A	19	16799102	Nonsense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1574529	16799102	42329881	197	13435										
GRAMD1A	0	genome.wustl.edu	37	chr19	35512464	35512464	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gcctggtgaagtcgctcattGagaagaactcgtggagcggc	15	9	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	35512464	35512464	G	A	SNP	GRAMD1A	ENST00000317991	human	ensembl	69_37n	1	known	missense	c.1534	p.E512K	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	49	0	0	54	12	18.18	-	-	-	A	35512464	G	A	35512464	3	1	217	1	0	0	0	0	1	0	0	0	6798	1291	45	2	1588	2	GRAMD1A	19	35512464	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	18713362	35512464	23616519	198	13436										
ZNF527	0	genome.wustl.edu	37	chr19	37880530	37880530	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	atgcaggagagaaaccctatGaatgtaacaaatgtggaaag	11	5	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	37880530	37880530	G	A	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.1579	p.E527K	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	294	0	0	362	86	19.15	-	-	-	A	37880530	G	A	37880530	3	1	217	1	0	0	0	0	1	0	0	0	18064	1291	45	2	1593	2	ZNF527	19	37880530	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2368066	37880530	21248453	199	13437										
ZNF781	0	genome.wustl.edu	37	chr19	38160656	38160656	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gaattttccgatgtctattaAatcagaaacagaagcaaagg	8	6	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	38160656	38160656	A	C	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	missense	c.394	p.L132V	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	219	0	0	413	106	20.42	-	-	-	C	38160656	A	C	38160656	3	2	217	1	0	0	0	0	1	0	0	0	18247	11	1	5	593	5	ZNF781	19	38160656	Missense_Mutation	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	280126	38160656	20968327	200	13438										
ZNF573	0	genome.wustl.edu	37	chr19	38230531	38230531	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gcccatgttcaacaagatttGagcgcctactaaaagtcttc	7	11	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	38230531	38230531	G	C	SNP	ZNF573	ENST00000590414	human	ensembl	69_37n	-1	known	nonsense	c.860	p.S287*	0.075	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144	342	0	0	823	96	10.43	-	-	-	C	38230531	G	C	38230531	4	2	217	1	0	0	0	0	0	1	0	0	18101	1294	45	2	1141	2	ZNF573	19	38230531	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	69875	38230531	20898452	201	13439										
BCKDHA	0	genome.wustl.edu	37	chr19	41928172	41928172	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggggacgcccatgccggcttCaacttcgctgccacacttga	11	15	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	41928172	41928172	C	A	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	1	known	missense	c.750	p.F250L	1.000	pfam_DH_E1,pfam_Transketolase_N	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	22	0	0	20	6	23.08	-	-	-	A	41928172	C	A	41928172	3	1	217	1	0	0	0	0	1	0	0	0	1363	825	29	2	772	2	BCKDHA	19	41928172	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3697641	41928172	17200811	202	13440										
GPR77	0	genome.wustl.edu	37	chr19	47845056	47845056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ccagccatgacctggtctcgGagatggaggtgtaggctgga	16	9	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	47845056	47845056	G	A	SNP	GPR77	ENST00000257267	human	ensembl	69_37n	1	known	missense	c.1000	p.E334K	0.963	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_C5A_anaphtx_rcpt	-	no_errors	GPR77	HGNC	ENSG00000134830	19	0	0	22	6	21.43	-	-	-	A	47845056	G	A	47845056	3	1	217	1	0	0	0	0	1	0	0	0	6759	1175	41	2	1002	2	GPR77	19	47845056	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5916884	47845056	11283927	203	13441										
KLK6	0	genome.wustl.edu	37	chr19	51466645	51466645	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gggaaggggctggatgagttCagagagtttggctgggcgtg	21	4	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	51466645	51466645	C	T	SNP	KLK6	ENST00000310157	human	ensembl	69_37n	-1	known	missense	c.358	p.E120K	0.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	KLK6	HGNC	ENSG00000167755	43	0	0	52	24	31.58	-	-	-	T	51466645	C	T	51466645	3	4	217	1	0	0	0	0	1	0	0	0	8461	835	29	2	388	2	KLK6	19	51466645	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3621589	51466645	7662338	204	13442										
KLK12	0	genome.wustl.edu	37	chr19	51532698	51532698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gactcccccacacaccagggGgcccccagaatcaccctgga	9	19	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	51532698	51532698	G	A	SNP	KLK12	ENST00000250351	human	ensembl	69_37n	-1	known	missense	c.607	p.P203S	0.982	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	KLK12	HGNC	ENSG00000186474	192	0	0	113	17	13.08	-	-	-	A	51532698	G	A	51532698	3	1	217	1	0	0	0	0	1	0	0	0	8453	1232	43	4	205	4	KLK12	19	51532698	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	66053	51532698	7596285	205	13443										
SIGLEC7	0	genome.wustl.edu	37	chr19	51647792	51647792	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gatctcctggatggggacctCtgtgtcccccctgcacccct	10	17	2	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	51647792	51647792	C	G	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.563	p.S188C	0.002	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	115	0	0	191	27	12.33	-	-	-	G	51647792	C	G	51647792	3	3	217	1	0	0	0	0	1	0	0	0	14402	913	32	2	569	2	SIGLEC7	19	51647792	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	115094	51647792	7481191	206	13444										
ZNF808	0	genome.wustl.edu	37	chr19	53057682	53057682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttctatgccatcgtagacttCatagtggtgaaaaaccttac	7	9	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	53057682	53057682	C	G	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.1306	p.H436D	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	542	0	0	556	70	11.18	-	-	-	G	53057682	C	G	53057682	3	3	217	1	0	0	0	0	1	0	0	0	18266	826	29	2	1523	2	ZNF808	19	53057682	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1409890	53057682	6071301	207	13445										
LILRA2	0	genome.wustl.edu	37	chr19	55098711	55098711	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gattacacagtggagaatctCatccgcatgggtgtggctgg	14	8	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	55098711	55098711	C	A	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	silent	c.1350	p.L450	0.011	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	186	0	0	186	79	29.7	-	-	-	A	55098711	C	A	55098711	2	1	217	1	0	0	0	0	0	0	0	1	8840	813	29	2		2	LILRA2	19	55098711	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2041029	55098711	4030272	208	13446										
PEG3	0	genome.wustl.edu	37	chr19	57327706	57327706	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agaatgaattttctgatgctCactgagctctgagctttgca	9	8	3	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	57327706	57327706	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.2104	p.E702K	0.124	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	352	0	0	292	121	29.3	-	-	-	T	57327706	C	T	57327706	3	4	217	1	0	0	0	0	1	0	0	0	11793	835	29	2	2666	2	PEG3	19	57327706	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	2228995	57327706	1801277	209	13447										
ZNF547	0	genome.wustl.edu	37	chr19	57889020	57889020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aagcctttctttgtaagtctCaccttgttcgtcaccagaca	6	12	3	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	19	57889020	57889020	C	G	SNP	ZNF547	ENST00000282282	human	ensembl	69_37n	1	known	missense	c.676	p.H226D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433	447	0	0	412	189	31.45	-	-	-	G	57889020	C	G	57889020	3	3	217	1	0	0	0	0	1	0	0	0	18075	826	29	2	686	2	ZNF547	19	57889020	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	561314	57889020	1239963	210	13448										
CPXM1	0	genome.wustl.edu	37	chr20	2776783	2776783	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctggttgttccagcggccctCggcccagcccaccagctctg	11	18	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	2776783	2776783	C	G	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.1267	p.E423Q	0.243	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	72	0	0	34	9	20.93	-	-	-	G	2776783	C	G	2776783	3	3	217	1	0	0	0	0	1	0	0	0	3867	893	31	3	957	3	CPXM1	20	2776783	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		2776783	60248737	211	13449										
C20orf194	0	genome.wustl.edu	37	chr20	3275242	3275242	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttctccccagcaggctggctCagggcactgaagagcttctg	12	13	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	3275242	3275242	C	G	SNP	C20orf194	ENST00000252032	human	ensembl	69_37n	-1	known	silent	c.2052	p.L684	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854	76	0	0	80	39	32.77	-	-	-	G	3275242	C	G	3275242	2	3	217	1	0	0	0	0	0	0	0	1	2119	813	29	2		2	C20orf194	20	3275242	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	498459	3275242	59750278	212	13450										
FLRT3	0	genome.wustl.edu	37	chr20	14307923	14307923	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcagcaagtttttcaaatctGaaggaatcccagcattattt	6	8	3	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	14307923	14307923	G	C	SNP	FLRT3	ENST00000341420	human	ensembl	69_37n	-1	known	nonsense	c.230	p.S77*	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	273	0	0	414	49	10.58	-	-	-	C	14307923	G	C	14307923	4	2	217	1	0	0	0	0	0	1	0	0	5986	1294	45	2	1723	2	FLRT3	20	14307923	Nonsense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	11032681	14307923	48717597	213	13451										
NINL	0	genome.wustl.edu	37	chr20	25442244	25442244	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgattcaggcattcaagttCaactctaagtttttggattt	7	7	4	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	25442244	25442244	C	G	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.3610	p.E1204Q	0.978	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	62	0	0	42	13	23.64	-	-	-	G	25442244	C	G	25442244	3	3	217	1	0	0	0	0	1	0	0	0	10492	835	29	2	554	2	NINL	20	25442244	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	11134321	25442244	37583276	214	13452										
ZNF831	0	genome.wustl.edu	37	chr20	57769623	57769623	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgaaggctgagccgcggctCacgtggtgttgcctgagccg	16	12	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	57769623	57769623	C	A	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	silent	c.3549	p.L1183	0.891	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	39	0	0	14	7	33.33	-	-	-	A	57769623	C	A	57769623	2	1	217	1	0	0	0	0	0	0	0	1	18278	813	29	2		2	ZNF831	20	57769623	Silent	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	32327379	57769623	5255897	215	13453										
DIDO1	0	genome.wustl.edu	37	chr20	61542600	61542600	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	aagcagactgggggccgcttCtggtctcagaagcgctttcc	13	12	2	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	20	61542600	61542600	C	G	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.365	p.R122T	0.009	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	33	0	0	17	6	26.09	-	-	-	G	61542600	C	G	61542600	3	3	217	1	0	0	0	0	1	0	0	0	4558	913	32	2	6543	2	DIDO1	20	61542600	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3772977	61542600	1482920	216	13454										
CECR2	0	genome.wustl.edu	37	chr22	17978481	17978481	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tccgtgtggagccattgggtGaagacaattctggggcacta	14	8	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	17978481	17978481	G	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.379	p.E127K	0.999	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	74	0	0	87	19	17.92	-	-	-	A	17978481	G	A	17978481	3	1	217	1	0	0	0	0	1	0	0	0	3235	1291	45	2	331	2	CECR2	22	17978481	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09		17978481	33326085	217	13455										
DGCR14	0	genome.wustl.edu	37	chr22	19127373	19127373	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	agaccccagagacaccttctCaaactcttcctcagcctggt	6	16	3	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	19127373	19127373	C	G	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.565	p.E189Q	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	65	0	0	45	6	11.76	-	-	-	G	19127373	C	G	19127373	3	3	217	1	0	0	0	0	1	0	0	0	4496	835	29	2	893	2	DGCR14	22	19127373	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	1148892	19127373	32177193	218	13456										
DGCR14	0	genome.wustl.edu	37	chr22	19130257	19130257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	acagggtggcgggggctcccGggacatcttgcccaaggcag	17	12	1	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	19130257	19130257	G	A	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.286	p.R96W	0.989	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	39	0	0	42	15	25.42	-	-	-	A	19130257	G	A	19130257	3	1	217	1	0	0	0	0	1	0	0	0	4496	1115	39	1	1180	1	DGCR14	22	19130257	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	2884	19130257	32174309	219	13457										
CCDC117	0	genome.wustl.edu	37	chr22	29177137	29177137	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagtgtgaagttgcccgaagGaagcttcaggagattgagga	15	6	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	29177137	29177137	G	A	SNP	CCDC117	ENST00000249064	human	ensembl	69_37n	1	known	silent	c.441	p.R147	0.997	NULL	NULL	-	no_errors	CCDC117	HGNC	ENSG00000159873	60	0	0	71	34	32.38	-	-	-	A	29177137	G	A	29177137	2	1	217	1	0	0	0	0	0	0	0	1	2779	1165	41	2		2	CCDC117	22	29177137	Silent	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	10046880	29177137	22127429	220	13458										
RFPL3	0	genome.wustl.edu	37	chr22	32754312	32754312	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ctgttgctgttccatggtctCtcagaggaacaaaatcaggc	10	10	3	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	32754312	32754312	C	G	SNP	RFPL3	ENST00000249007	human	ensembl	69_37n	1	known	missense	c.254	p.S85C	0.004	pfam_RDM_domain_RFPL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL3	HGNC	ENSG00000128276	166	0	0	165	53	24.31	-	-	-	G	32754312	C	G	32754312	3	3	217	1	0	0	0	0	1	0	0	0	13338	913	32	2	256	2	RFPL3	22	32754312	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3577175	32754312	18550254	221	13459										
GCAT	0	genome.wustl.edu	37	chr22	38206084	38206084	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgggcctgagcagccaccctGaggtgatccaggcaggtctg	15	12	1	3			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	22	38206084	38206084	G	A	SNP	GCAT	ENST00000248924	human	ensembl	69_37n	1	known	missense	c.247	p.E83K	0.705	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	-	no_errors	GCAT	HGNC	ENSG00000100116	34	0	0	20	6	23.08	-	-	-	A	38206084	G	A	38206084	3	1	217	1	0	0	0	0	1	0	0	0	6334	1291	45	2	331	2	GCAT	22	38206084	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	5451772	38206084	13098482	222	13460										
MAGEB10	0	genome.wustl.edu	37	chrX	27839430	27839430	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tgaacagagtcatcatgcctCgaggtcagaagagtaaactc	10	9	3	4			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	27839430	27839430	C	G	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	missense	c.7	p.R3G	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	37	0	0	48	14	22.58	-	-	-	G	27839430	C	G	27839430	3	3	217	1	0	0	0	0	1	0	0	0	9244	876	31	3	9	3	MAGEB10	23	27839430	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09		27839430	127431130	223	13461										
FAM123B	0	genome.wustl.edu	37	chrX	63413064	63413064	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ggttggtccttctgtcgcctCagctgccttgttcttggctc	11	13	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	63413064	63413064	C	T	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.103	p.E35K	0.181	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	227	0	0	219	91	29.35	-	-	-	T	63413064	C	T	63413064	3	4	217	1	0	0	0	0	1	0	0	0	5463	835	29	2	3308	2	FAM123B	23	63413064	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	35573634	63413064	91857496	224	13462										
MTMR8	0	genome.wustl.edu	37	chrX	63445342	63445342	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cagccactcctgctgttgatGaaacgtttgtaacgctcctg	9	12	0	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	63445342	63445342	G	T	SNP	MTMR8	ENST00000453546	human	ensembl	69_37n	-1	known	missense	c.1314	p.F438L	0.167	superfamily_Ankyrin_rpt-contain_dom	pfam_Myotub-related,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043	160	0	0	200	31	13.42	-	-	-	T	63445342	G	T	63445342	3	4	217	1	0	0	0	0	1	0	0	0	10021	1281	45	2		2	MTMR8	23	63445342	Missense_Mutation	SNP	G	TCGA-A8-A09G-01A-21W-A019-09	32278	63445342	91825218	225	13463										
NAP1L3	0	genome.wustl.edu	37	chrX	92927869	92927869	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	ttgatgatttgaaaccgcctAtcatacagaggcttgttgag	10	7	1	5			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	92927869	92927869	A	G	SNP	NAP1L3	ENST00000373079	human	ensembl	69_37n	-1	known	silent	c.435	p.D145	0.514	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310	215	0	0	82	25	23.36	-	-	-	G	92927869	A	G	92927869	2	3	217	1	0	0	0	0	0	0	0	1	10230	446	16	5		5	NAP1L3	23	92927869	Silent	SNP	A	TCGA-A8-A09G-01A-21W-A019-09	29482527	92927869	62342691	226	13464										
XKRX	0	genome.wustl.edu	37	chrX	100183269	100183269	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	cggatccacatttggctcctCaggaatttcataaactctgt	7	11	3	0			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	100183269	100183269	C	G	SNP	XKRX	ENST00000328526	human	ensembl	69_37n	-1	known	missense	c.64	p.E22Q	0.739	NULL	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489	628	0	0	393	193	32.88	-	-	-	G	100183269	C	G	100183269	3	3	217	1	0	0	0	0	1	0	0	0	17536	835	29	2	1336	2	XKRX	23	100183269	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	7255400	100183269	55087291	227	13465										
COL4A6	0	genome.wustl.edu	37	chrX	107435807	107435807	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gtacaccaggatctccaggaTtacctggcattgtaatgaaa	9	9	1	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	107435807	107435807	T	C	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.1079	p.N360S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	30	0	0	19	8	28.57	-	-	-	C	107435807	T	C	107435807	3	2	217	1	0	0	0	0	1	0	0	0	3725	1493	52	5	4108	5	COL4A6	23	107435807	Missense_Mutation	SNP	T	TCGA-A8-A09G-01A-21W-A019-09	7252538	107435807	47834753	228	13466										
CAPN6	0	genome.wustl.edu	37	chrX	110489936	110489936	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	gcagtcgctggggtcagcatCcagagtaacctgccccaaga	12	13	1	2			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	110489936	110489936	C	G	SNP	CAPN6	ENST00000324068	human	ensembl	69_37n	-1	known	missense	c.1795	p.D599H	0.986	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_Ca-dep,superfamily_Calpain_domain_III,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_Ca-dep,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	204	0	0	263	114	30.24	-	-	-	G	110489936	C	G	110489936	3	3	217	1	0	0	0	0	1	0	0	0	2655	855	30	2	134	2	CAPN6	23	110489936	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	3054129	110489936	44780624	229	13467										
CUL4B	0	genome.wustl.edu	37	chrX	119660675	119660675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tctttccatgtagtcccggtCaattaaagattctattctct	5	10	4	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	119660675	119660675	C	T	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.2683	p.D895N	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	222	0	0	198	87	30.53	-	-	-	T	119660675	C	T	119660675	3	4	217	1	0	0	0	0	1	0	0	0	4089	826	29	2	62	2	CUL4B	23	119660675	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	9170739	119660675	35609885	230	13468										
SAGE1	0	genome.wustl.edu	37	chrX	134987483	134987483	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.567099567099567	131	1.53523205706932e-47	3.73762025120574	4.23138220805564	3.34167905939214	1	1	96	tcgaactgacaaagtcttgtCaactgctccaccacagcttg	7	13	2	1			TCGA-A8-A09G-01A-21W-A019-09	TCGA-A8-A09G-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bd68e94-d902-4079-8fdb-16edcc90de1c	f53ea676-2475-408e-9b54-29324a255a2e	X	134987483	134987483	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.386	p.S129L	0.010	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	190	0	0	264	40	13.16	-	-	-	T	134987483	C	T	134987483	3	4	217	1	0	0	0	0	1	0	0	0	13895	838	29	2	400	2	SAGE1	23	134987483	Missense_Mutation	SNP	C	TCGA-A8-A09G-01A-21W-A019-09	15326808	134987483	20283077	231	13469										
PLEKHG5	0	genome.wustl.edu	37	chr1	6530627	6530628	+	Frame_Shift_Ins	INS	-	-	C													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gtcgatgcggctcaccacggINSccgccagccgctgccgctcc							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	6530627	6530628	-	C	INS	PLEKHG5	ENST00000537245	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1856_1855	p.A619fs	0.996:0.991	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	9	0	0	3	2	40	-	-	-	C	6530628	-	C	6530627	7	5	218	1	0	1	1	0	0	0	0	0	12147	1203	42	0	1429	0	PLEKHG5	1	6530627	Frame_Shift_Ins	INS	-	TCGA-A8-A09I-01A-22W-A050-09		6530627	242719994	1	13470										
SPEN	0	genome.wustl.edu	37	chr1	16255129	16255130	+	Frame_Shift_Ins	INS	-	-	C													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ataaagaacgaacttttgatINSccggagagagtggagagaga							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	16255129	16255130	-	C	INS	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_ins	c.2394_2395	p.E799fs	0.184:0.049	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	157	0	0	60	37	38.14	-	-	-	C	16255130	-	C	16255129	7	5	218	1	0	1	1	0	0	0	0	0	15129	1432	50	0	2436	0	SPEN	1	16255129	Frame_Shift_Ins	INS	-	TCGA-A8-A09I-01A-22W-A050-09	9724502	16255129	232995492	2	13471										
KDM4A	0	genome.wustl.edu	37	chr1	44134883	44134883	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atctgagttctgagcagtatGagatgacggagtgcccggca	14	8	2	4			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	44134883	44134883	G	A	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.1276	p.E426K	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	242	0	0	101	38	27.14	-	-	-	A	44134883	G	A	44134883	3	1	218	1	0	0	0	0	1	0	0	0	8182	1291	45	2	1310	2	KDM4A	1	44134883	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	27879754	44134883	205115738	3	13472										
LPHN2	0	genome.wustl.edu	37	chr1	82408979	82408979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggactagaattaagagtggcGaggccataattaactatgcc	11	7	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	82408979	82408979	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.724	p.E242K	1.000	pfam_Olfac-like,smart_Olfac-like,prints_GPCR_2_latrophilin,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	283	0	0	81	33	28.95	-	-	-	A	82408979	G	A	82408979	3	1	218	1	0	0	0	0	1	0	0	0	8982	1059	37	1	738	1	LPHN2	1	82408979	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	38274096	82408979	166841642	4	13473										
ATP1A2	0	genome.wustl.edu	37	chr1	160099959	160099959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gatgaagggggccccagagcGcattctggaccggtgctcca	15	12	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	160099959	160099959	G	A	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.1529	p.R510H	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	69	0	0	104	14	11.86	-	-	-	A	160099959	G	A	160099959	3	1	218	1	0	0	0	0	1	0	0	0	1133	1087	38	1	1575	1	ATP1A2	1	160099959	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	77690980	160099959	89150662	5	13474										
PPOX	0	genome.wustl.edu	37	chr1	161140244	161140244	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cagaagatccaggagtcctgGgaatcgtgtatgactcagtt	12	8	1	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	161140244	161140244	G	C	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	missense	c.1033	p.G345R	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	199	0	0	156	20	11.36	-	-	-	C	161140244	G	C	161140244	3	2	218	1	0	0	0	0	1	0	0	0	12425	1233	43	4	1067	4	PPOX	1	161140244	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	1040285	161140244	88110377	6	13475										
DDR2	0	genome.wustl.edu	37	chr1	162746031	162746031	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gccacacgaaactgtttagtGggtaagaactacacaatcaa	8	9	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	162746031	162746031	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	silent	c.2154	p.V718	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	258	0	0	261	35	11.78	-	-	-	A	162746031	G	A	162746031	2	1	218	1	0	0	0	0	0	0	0	1	4368	1335	47	4		4	DDR2	1	162746031	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	1605787	162746031	86504590	7	13476										
F5	0	genome.wustl.edu	37	chr1	169519203	169519203	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctctaagatgttccacttatAagtataggtttcccctggtt	7	9	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	169519203	169519203	A	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.1447	p.Y483N	0.995	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	438	0	0	395	50	11.21	-	-	-	T	169519203	A	T	169519203	3	4	218	1	0	0	0	0	1	0	0	0	5385	362	13	5	5291	5	F5	1	169519203	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	6773172	169519203	79731418	8	13477										
F5	0	genome.wustl.edu	37	chr1	169525950	169525950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgggcccacagtcatatttgCggtagtggatgtagcactga	13	8	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	169525950	169525950	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.886	p.A296T	0.997	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	328	2	0.61	307	40	11.49	-	-	-	T	169525950	C	T	169525950	3	4	218	1	0	0	0	0	1	0	0	0	5385	768	27	1	5868	1	F5	1	169525950	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	6747	169525950	79724671	9	13478										
HMCN1	0	genome.wustl.edu	37	chr1	185958690	185958690	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tggtagtctgtatgtggtatCacctggaggagaggagagtg	17	4	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	185958690	185958690	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.3119	p.S1040L	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	110	0	0	124	18	12.68	-	-	-	T	185958690	C	T	185958690	3	4	218	1	0	0	0	0	1	0	0	0	7271	838	29	2	3201	2	HMCN1	1	185958690	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	16432740	185958690	63291931	10	13479										
ASPM	0	genome.wustl.edu	37	chr1	197065231	197065231	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccaacatctataccaggcttGaatcttgcaggcagctttca	7	12	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	197065231	197065231	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.8884	p.Q2962E	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	260	0	0	193	22	10.19	-	-	-	C	197065231	G	C	197065231	3	2	218	1	0	0	0	0	1	0	0	0	1060	1299	45	2	1589	2	ASPM	1	197065231	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	11106541	197065231	52185390	11	13480										
CNTN2	0	genome.wustl.edu	37	chr1	205038689	205038689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gagctcatcgtcaactggacGgtaagctgcaagggtcagat	13	9	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	205038689	205038689	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	silent	c.2196	p.T732	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	109	0	0	103	14	11.97	-	-	-	A	205038689	G	A	205038689	2	1	218	1	0	0	0	0	0	0	0	1	3671	1130	39	1		1	CNTN2	1	205038689	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	7973458	205038689	44211932	12	13481										
PLXNA2	0	genome.wustl.edu	37	chr1	208391168	208391168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggtgctgaactgaggcatgcCggctgctgggggggccagca	19	10	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	208391168	208391168	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.100	p.G34S	0.350	pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	82	0	0	48	10	17.24	-	-	-	T	208391168	C	T	208391168	3	4	218	1	0	0	0	0	1	0	0	0	12194	652	23	1	5708	1	PLXNA2	1	208391168	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	3352479	208391168	40859453	13	13482										
SMYD3	0	genome.wustl.edu	37	chr1	246490556	246490556	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tggcagctgagaggcatcctGtatttcttctctcatgaaat	9	9	3	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	1	246490556	246490556	G	A	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	nonsense	c.478	p.Q160*	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	122	0	0	123	19	13.38	-	-	-	A	246490556	G	A	246490556	4	1	218	1	0	0	0	0	0	1	0	0	14912	1386	48	4	840	4	SMYD3	1	246490556	Nonsense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	38099388	246490556	2760065	14	13483										
IAH1	0	genome.wustl.edu	37	chr2	9628448	9628448	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	attaagtctgctgggagatgGagaccattagccaatcacag	11	8	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	9628448	9628448	G	C	SNP	IAH1	ENST00000497473	human	ensembl	69_37n	1	known	missense	c.737	p.G246A	0.871	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	IAH1	HGNC	ENSG00000134330	130	0	0	109	20	15.27	-	-	-	C	9628448	G	C	9628448	3	2	218	1	0	0	0	0	1	0	0	0	7525	1174	41	2	759	2	IAH1	2	9628448	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		9628448	233570925	15	13484										
ACTR2	0	genome.wustl.edu	37	chr2	65480995	65480995	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gatataactagatatcttatCaaggtaagtgaaaggaaaat	8	3	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	65480995	65480995	C	T	SNP	ACTR2	ENST00000377982	human	ensembl	69_37n	1	known	silent	c.597	p.I199	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR2	HGNC	ENSG00000138071	230	0	0	174	26	13	-	-	-	T	65480995	C	T	65480995	2	4	218	1	0	0	0	0	0	0	0	1	211	816	29	2		2	ACTR2	2	65480995	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	55852547	65480995	177718378	16	13485										
SLC9A2	0	genome.wustl.edu	37	chr2	103310911	103310911	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctggtggagtttcttgatgtCaagaggtccaataagaaaca	11	6	2	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	103310911	103310911	C	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	silent	c.1464	p.V488	0.195	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	238	0	0	174	29	14.29	-	-	-	G	103310911	C	G	103310911	2	3	218	1	0	0	0	0	0	0	0	1	14801	813	29	2		2	SLC9A2	2	103310911	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	37829916	103310911	139888462	17	13486										
KCNH7	0	genome.wustl.edu	37	chr2	163694986	163694986	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tttccgaatgatggtccccaGaaatgtattttgtggtgcca	10	8	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	163694986	163694986	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	silent	c.43	p.L15	0.965	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	207	0	0	82	25	23.36	-	-	-	A	163694986	G	A	163694986	2	1	218	1	0	0	0	0	0	0	0	1	8091	933	33	2		2	KCNH7	2	163694986	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	60384075	163694986	79504387	18	13487										
XIRP2	0	genome.wustl.edu	37	chr2	168074744	168074744	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gtgaagaaacaatttgaggaCgaaattacttcttcccgtaa	8	7	1	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	168074744	168074744	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.792	p.D264	0.225	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	225	0	0	176	26	12.87	-	-	-	T	168074744	C	T	168074744	2	4	218	1	0	0	0	0	0	0	0	1	17527	535	19	1		1	XIRP2	2	168074744	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	4379758	168074744	75124629	19	13488										
AOX1	0	genome.wustl.edu	37	chr2	201499591	201499591	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tcgttcccaagggagaggatCaagaaatggatgtctacgtg	13	7	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	2	201499591	201499591	C	G	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	missense	c.2299	p.Q767E	0.644	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	140	0	0	93	12	11.43	-	-	-	G	201499591	C	G	201499591	3	3	218	1	0	0	0	0	1	0	0	0	730	827	29	2	2381	2	AOX1	2	201499591	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	33424847	201499591	41699782	20	13489										
DCLK3	0	genome.wustl.edu	37	chr3	36779994	36779994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggtctcggtctccccacagcGgtggtctcctttcagagcct	11	15	4	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	3	36779994	36779994	G	A	SNP	DCLK3	ENST00000416516	human	ensembl	69_37n	-1	known	missense	c.157	p.R53C	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673	180	0	0	115	21	15.33	-	-	-	A	36779994	G	A	36779994	3	1	218	1	0	0	0	0	1	0	0	0	4324	1116	39	1	1805	1	DCLK3	3	36779994	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		36779994	161242436	21	13490										
IGSF11	0	genome.wustl.edu	37	chr3	118624539	118624539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agacagggcactgatgttccGgatggtgactgttccctgga	14	9	0	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	3	118624539	118624539	G	A	SNP	IGSF11	ENST00000393775	human	ensembl	69_37n	-1	known	missense	c.607	p.R203W	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF11	HGNC	ENSG00000144847	259	0	0	141	29	17.06	-	-	-	A	118624539	G	A	118624539	3	1	218	1	0	0	0	0	1	0	0	0	7652	1115	39	1	700	1	IGSF11	3	118624539	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	81844545	118624539	79397891	22	13491										
ECE2	0	genome.wustl.edu	37	chr3	184009866	184009866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gcaggtgtggtgctcggtccGcacaccagagagctctcacg	14	13	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	3	184009866	184009866	G	A	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	missense	c.2492	p.R831H	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	28	0	0	16	6	27.27	-	-	-	A	184009866	G	A	184009866	3	1	218	1	0	0	0	0	1	0	0	0	4925	1087	38	1	3130	1	ECE2	3	184009866	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	65385327	184009866	14012564	23	13492										
GUF1	0	genome.wustl.edu	37	chr4	44697709	44697709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	taggcaactgtttgagatagCaattcaagctgctattggaa	10	6	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	4	44697709	44697709	C	A	SNP	GUF1	ENST00000281543	human	ensembl	69_37n	1	known	missense	c.1793	p.A598E	1.000	pfam_LepA_GTP-bd_C,tigrfam_EF-4	pfam_ProtSyn_GTP-bd,pfam_LepA_GTP-bd_C,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806	214	0	0	57	21	26.92	-	-	-	A	44697709	C	A	44697709	3	1	218	1	0	0	0	0	1	0	0	0	6950	710	25	4	1851	4	GUF1	4	44697709	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		44697709	146456567	24	13493										
LNX1	0	genome.wustl.edu	37	chr4	54362417	54362417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atgaaagctgtcatctcgggGtctgtaggcatccggggcct	14	10	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	4	54362417	54362417	G	A	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.1123	p.P375S	0.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	327	0	0	193	45	18.75	-	-	-	A	54362417	G	A	54362417	3	1	218	1	0	0	0	0	1	0	0	0	8921	1261	44	4	1087	4	LNX1	4	54362417	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	9664708	54362417	136791859	25	13494										
PTPN13	0	genome.wustl.edu	37	chr4	87643534	87643534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccatgcttgacatcaccaggGatccgttaagagaaattgcc	9	11	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	4	87643534	87643534	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.1555	p.D519N	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	144	0	0	85	21	19.63	-	-	-	A	87643534	G	A	87643534	3	1	218	1	0	0	0	0	1	0	0	0	12863	1174	41	2	1589	2	PTPN13	4	87643534	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	33281117	87643534	103510742	26	13495										
GRID2	0	genome.wustl.edu	37	chr4	94376970	94376970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tcttgcaccatttgatctctCtctatgggcttgcattgctg	8	11	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	4	94376970	94376970	C	T	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.1703	p.S568F	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	342	0	0	174	45	20.45	-	-	-	T	94376970	C	T	94376970	3	4	218	1	0	0	0	0	1	0	0	0	6823	913	32	2	1745	2	GRID2	4	94376970	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	6733436	94376970	96777306	27	13496										
MTMR12	0	genome.wustl.edu	37	chr5	32263227	32263227	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tggaaagcttacctctcacaGactttatagccttcgttgac	7	11	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	32263227	32263227	G	A	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	silent	c.705	p.V235	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	433	0	0	354	58	14.08	-	-	-	A	32263227	G	A	32263227	2	1	218	1	0	0	0	0	0	0	0	1	10013	929	33	2		2	MTMR12	5	32263227	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		32263227	148652033	28	13497										
RXFP3	0	genome.wustl.edu	37	chr5	33937086	33937086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cggacacagaggcccgggtgCggattctcatcagcgtggtg	16	11	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	33937086	33937086	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	69_37n	1	known	missense	c.241	p.R81W	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631	68	0	0	28	8	22.22	-	-	-	T	33937086	C	T	33937086	3	4	218	1	0	0	0	0	1	0	0	0	13847	759	27	1	243	1	RXFP3	5	33937086	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	1673859	33937086	146978174	29	13498										
RAPGEF6	0	genome.wustl.edu	37	chr5	130797633	130797633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctcagtcggttcaatattacGaaacaaatcaaagtccctca	5	11	4	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	130797633	130797633	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.2629	p.R877C	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	86	0	0	61	10	14.08	-	-	-	A	130797633	G	A	130797633	3	1	218	1	0	0	0	0	1	0	0	0	13131	1058	37	1	2679	1	RAPGEF6	5	130797633	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	96860547	130797633	50117627	30	13499										
PCDHB10	0	genome.wustl.edu	37	chr5	140573346	140573346	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tacatcctaattacagaaggCgcgctggacagagagatcag	11	9	1	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	140573346	140573346	C	T	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	silent	c.1221	p.G407	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	168	0	0	110	20	15.15	-	-	-	T	140573346	C	T	140573346	2	4	218	1	0	0	0	0	0	0	0	1	11608	755	27	1		1	PCDHB10	5	140573346	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	9775713	140573346	40341914	31	13500										
SPINK14	0	genome.wustl.edu	37	chr5	147553826	147553826	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccatatgagaaagtaaacttGagctggtacaatggaacggt	11	6	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	147553826	147553826	G	C	SNP	SPINK14	ENST00000356972	human	ensembl	69_37n	1	known	missense	c.141	p.L47F	1.000	smart_Prot_inh_Kazal	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	-	no_errors	SPINK14	HGNC	ENSG00000196800	544	0	0	341	75	18.03	-	-	-	C	147553826	G	C	147553826	3	2	218	1	0	0	0	0	1	0	0	0	15150	1281	45	2	151	2	SPINK14	5	147553826	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	6980480	147553826	33361434	32	13501										
ATP10B	0	genome.wustl.edu	37	chr5	160115005	160115005	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gagagagcagcggtgtggttTccgatggacaatgggggaag	19	5	0	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	5	160115005	160115005	T	G	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.77	p.E26A	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	202	0	0	109	16	12.8	-	-	-	G	160115005	T	G	160115005	3	3	218	1	0	0	0	0	1	0	0	0	1121	1783	62	5	4396	5	ATP10B	5	160115005	Missense_Mutation	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	12561179	160115005	20800255	33	13502										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032069	26032069	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cttgaagtcttgggcgatttCtcgcaccaggcgctggaacg	13	11	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	6	26032069	26032069	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.220	p.E74K	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	160	0	0	59	16	21.33	-	-	-	T	26032069	C	T	26032069	3	4	218	1	0	0	0	0	1	0	0	0	7207	922	32	2	194	2	HIST1H3B	6	26032069	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		26032069	145082998	34	13503										
ZNF323	0	genome.wustl.edu	37	chr6	28297245	28297245	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aagatttgctctttggtgtgGatttctggccttagccactg	11	8	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	6	28297245	28297245	G	A	SNP	ZNF323	ENST00000344279	human	ensembl	69_37n	-1	known	silent	c.216	p.I72	0.001	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF323	HGNC	ENSG00000235109	135	0	0	60	11	15.49	-	-	-	A	28297245	G	A	28297245	2	1	218	1	0	0	0	0	0	0	0	1	17939	1164	41	2		2	ZNF323	6	28297245	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	2265176	28297245	142817822	35	13504										
FRS3	0	genome.wustl.edu	37	chr6	41739230	41739230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aggcagtggcggcccctgcgGtggtcatcttcactggccgg	16	13	3	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	6	41739230	41739230	G	T	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.606	p.H202Q	0.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	39	0	0	36	4	10	-	-	-	T	41739230	G	T	41739230	3	4	218	1	0	0	0	0	1	0	0	0	6111	1252	44	4	876	4	FRS3	6	41739230	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	13441985	41739230	129375837	36	13505										
PHF3	0	genome.wustl.edu	37	chr6	64422949	64422949	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tccatttccagggcctcctaAttttcccccacaaagcatgt	5	15	0	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	6	64422949	64422949	A	G	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.5465	p.N1822S	0.138	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	300	0	0	117	20	14.18	-	-	-	G	64422949	A	G	64422949	3	3	218	1	0	0	0	0	1	0	0	0	11910	101	4	5	5523	5	PHF3	6	64422949	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	22683719	64422949	106692118	37	13506										
SNAP91	0	genome.wustl.edu	37	chr6	84371241	84371241	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cctttcttcaccctggcaaaAtcaaaggccatctgtctgta	6	13	5	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	6	84371241	84371241	A	T	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.432	p.D144E	1.000	pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	58	0	0	21	12	36.36	-	-	-	T	84371241	A	T	84371241	3	4	218	1	0	0	0	0	1	0	0	0	14922	98	4	5	2387	5	SNAP91	6	84371241	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	19948292	84371241	86743826	38	13507										
KLHL7	0	genome.wustl.edu	37	chr7	23213889	23213889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ttgtgttgtcgatacttgtgGagcaaatgaagagacccttg	12	6	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	7	23213889	23213889	G	A	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	missense	c.1733	p.G578E	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	469	0	0	294	69	19.01	-	-	-	A	23213889	G	A	23213889	3	1	218	1	0	0	0	0	1	0	0	0	8447	1174	41	2	1838	2	KLHL7	7	23213889	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		23213889	135924774	39	13508										
GUSB	0	genome.wustl.edu	37	chr7	65439594	65439594	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tctgcatcacttcctctgcaTaggggtagtggctggtacgg	13	10	3	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	7	65439594	65439594	T	C	SNP	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	missense	c.1163	p.Y388C	0.998	pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	56	0	0	31	5	13.89	-	-	-	C	65439594	T	C	65439594	3	2	218	1	0	0	0	0	1	0	0	0	6953	1406	49	5	816	5	GUSB	7	65439594	Missense_Mutation	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	42225705	65439594	93699069	40	13509										
NCF1	0	genome.wustl.edu	37	chr7	74193727	74193727	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccccacctcctcgacttcttCaaggtgcgccctgatgacct	7	18	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	7	74193727	74193727	C	G	SNP	NCF1	ENST00000289473	human	ensembl	69_37n	1	known	missense	c.354	p.F118L	1.000	pfam_Phox,superfamily_Phox,smart_Phox,prints_P47PHOX,pfscan_Phox	pfam_SH3_domain,pfam_NADPH_oxidase_p47Phox_C,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_P47PHOX,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF1	HGNC	ENSG00000158517	47	0	0	24	5	17.24	-	-	-	G	74193727	C	G	74193727	3	3	218	1	0	0	0	0	1	0	0	0	10288	825	29	2	368	2	NCF1	7	74193727	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	8754133	74193727	84944936	41	13510										
ABCB4	0	genome.wustl.edu	37	chr7	87060834	87060834	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atgacatctgcatttcggacCgtagacagtcggtgtgctat	11	9	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	7	87060834	87060834	C	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	silent	c.1779	p.T593	0.700	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	188	0	0	29	40	57.97	-	-	-	T	87060834	C	T	87060834	2	4	218	1	0	0	0	0	0	0	0	1	43	639	23	1		1	ABCB4	7	87060834	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	12867107	87060834	72077829	42	13511										
BRF2	0	genome.wustl.edu	37	chr8	37702391	37702391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gtcaccgatgtgcttcaccaCagaccgtttgtcaagtctca	8	13	4	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	8	37702391	37702391	C	A	SNP	BRF2	ENST00000220659	human	ensembl	69_37n	-1	known	missense	c.877	p.V293L	1.000	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221	24	0	0	13	18	58.06	-	-	-	A	37702391	C	A	37702391	3	1	218	1	0	0	0	0	1	0	0	0	1519	478	17	4	386	4	BRF2	8	37702391	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		37702391	108661631	43	13512										
FAM110B	0	genome.wustl.edu	37	chr8	59059800	59059800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gatgacagtgccaatgaccgCgtgccgtatggcatttctgc	12	11	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	8	59059800	59059800	C	T	SNP	FAM110B	ENST00000361488	human	ensembl	69_37n	1	known	silent	c.1011	p.R337	0.390	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122	223	0	0	131	49	26.92	-	-	-	T	59059800	C	T	59059800	2	4	218	1	0	0	0	0	0	0	0	1	5437	755	27	1		1	FAM110B	8	59059800	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	21357409	59059800	87304222	44	13513										
UBR5	0	genome.wustl.edu	37	chr8	103287948	103287948	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atacatactgatccaggttcTgctccaacatcttccatgaa	5	12	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	8	103287948	103287948	T	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.6618	p.A2206	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	234	0	0	227	37	14.02	-	-	-	A	103287948	T	A	103287948	2	1	218	1	0	0	0	0	0	0	0	1	17002	1567	55	5		5	UBR5	8	103287948	Silent	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	44228148	103287948	43076074	45	13514										
KCNV1	0	genome.wustl.edu	37	chr8	110986391	110986391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cggccagggccccggggcggCggtaggaagccaccaccacg	17	16	0	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	8	110986391	110986391	C	A	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.227	p.R76L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	15	0	0	2	6	75	-	-	-	A	110986391	C	A	110986391	3	1	218	1	0	0	0	0	1	0	0	0	8148	768	27	3	1287	3	KCNV1	8	110986391	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	7698443	110986391	35377631	46	13515										
ASAP1	0	genome.wustl.edu	37	chr8	131191529	131191529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cttgcactgtgcatggtaatActttataagattctgcagca	8	8	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	8	131191529	131191529	A	C	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.727	p.Y243D	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	311	0	0	246	84	25.38	-	-	-	C	131191529	A	C	131191529	3	2	218	1	0	0	0	0	1	0	0	0	1014	391	14	5	2750	5	ASAP1	8	131191529	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	20205138	131191529	15172493	47	13516										
PTPRD	0	genome.wustl.edu	37	chr9	8524958	8524958	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	attggcaggagcggaatagcGagtgcccgcgctgttggtgg	18	8	0	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	8524958	8524958	G	C	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.646	p.R216G	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	134	0	0	72	12	13.95	-	-	-	C	8524958	G	C	8524958	3	2	218	1	0	0	0	0	1	0	0	0	12882	1058	37	3	5276	3	PTPRD	9	8524958	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		8524958	132688473	48	13517										
HAUS6	0	genome.wustl.edu	37	chr9	19082942	19082942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agcaacattagttccatctaAagcatattggttaacaagac	6	8	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	19082942	19082942	A	C	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.799	p.L267V	0.999	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	70	0	0	38	12	24	-	-	-	C	19082942	A	C	19082942	3	2	218	1	0	0	0	0	1	0	0	0	7021	11	1	5	2108	5	HAUS6	9	19082942	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	10557984	19082942	122130489	49	13518										
LINGO2	0	genome.wustl.edu	37	chr9	27950444	27950444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cagaggatatgatatgaattCttcagggttgacgcttttta	10	5	2	4			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	27950444	27950444	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.226	p.E76K	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	234	0	0	97	18	15.65	-	-	-	T	27950444	C	T	27950444	3	4	218	1	0	0	0	0	1	0	0	0	8871	922	32	2	1598	2	LINGO2	9	27950444	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	8867502	27950444	113262987	50	13519										
CCIN	0	genome.wustl.edu	37	chr9	36170527	36170527	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgagcagatttcagggctgaAgacagcctggcggtatgaca	14	8	1	5			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	36170527	36170527	A	G	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.1028	p.K343R	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	138	0	0	111	18	13.95	-	-	-	G	36170527	A	G	36170527	3	3	218	1	0	0	0	0	1	0	0	0	2905	72	3	5	1030	5	CCIN	9	36170527	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	8220083	36170527	105042904	51	13520										
GABBR2	0	genome.wustl.edu	37	chr9	101052888	101052888	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	acaggcccgagaccatgactCggaaggagggtggcacatgt	15	10	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	101052888	101052888	C	G	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	missense	c.2804	p.R935P	1.000	NULL	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	75	0	0	39	11	21.57	-	-	-	G	101052888	C	G	101052888	3	3	218	1	0	0	0	0	1	0	0	0	6205	884	31	3	25	3	GABBR2	9	101052888	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	64882361	101052888	40160543	52	13521										
RNF20	0	genome.wustl.edu	37	chr9	104313065	104313065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agcaccaggttgagcttattGaggtaatagccttgccttgt	11	8	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	104313065	104313065	G	A	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.1270	p.E424K	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	332	0	0	168	23	11.98	-	-	-	A	104313065	G	A	104313065	3	1	218	1	0	0	0	0	1	0	0	0	13559	1291	45	2	1304	2	RNF20	9	104313065	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	3260177	104313065	36900366	53	13522										
SLC25A25	0	genome.wustl.edu	37	chr9	130868675	130868675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gcggaagacaggccagtactCaggaatgctggactgcgcca	14	11	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	130868675	130868675	C	T	SNP	SLC25A25	ENST00000373069	human	ensembl	69_37n	1	known	missense	c.1088	p.S363L	0.995	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Graves_DC,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,prints_Mit_carrier,prints_Graves_DC,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A25	HGNC	ENSG00000148339	51	0	0	27	5	15.62	-	-	-	T	130868675	C	T	130868675	3	4	218	1	0	0	0	0	1	0	0	0	14577	838	29	2	1468	2	SLC25A25	9	130868675	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	26555610	130868675	10344756	54	13523										
NUP214	0	genome.wustl.edu	37	chr9	134014692	134014692	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	attgggaatcttggctactgGaggattctagtcgagctgaa	13	6	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	9	134014692	134014692	G	C	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.1030	p.E344Q	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	178	0	0	102	29	22.14	-	-	-	C	134014692	G	C	134014692	3	2	218	1	0	0	0	0	1	0	0	0	10835	1175	41	2	1068	2	NUP214	9	134014692	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	3146017	134014692	7198739	55	13524										
UNC5B	0	genome.wustl.edu	37	chr10	73048335	73048335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gctcttacagtcgatggggcGtggacggagtggagcaagtg	18	7	1	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	73048335	73048335	G	A	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	silent	c.912	p.A304	0.281	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	31	0	0	16	5	23.81	-	-	-	A	73048335	G	A	73048335	2	1	218	1	0	0	0	0	0	0	0	1	17089	1132	40	1		1	UNC5B	10	73048335	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		73048335	62486412	56	13525										
ECD	0	genome.wustl.edu	37	chr10	74894479	74894479	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tccaatatatttgaaaccagGttcaggtctacatctactgg	7	9	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	74894479	74894479	G	C	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	missense	c.1896	p.N632K	1.000	NULL	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882	126	0	0	88	18	16.98	-	-	-	C	74894479	G	C	74894479	3	2	218	1	0	0	0	0	1	0	0	0	4923	1252	44	4	141	4	ECD	10	74894479	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	1846144	74894479	60640268	57	13526										
MYOF	0	genome.wustl.edu	37	chr10	95072846	95072846	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ttcatggacttctgctcaaaGagggaggctgtcttggcttt	12	8	4	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	95072846	95072846	G	C	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	silent	c.5820	p.L1940	0.999	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	130	0	0	152	27	15.08	-	-	-	C	95072846	G	C	95072846	2	2	218	1	0	0	0	0	0	0	0	1	10161	929	33	2		2	MYOF	10	95072846	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	20178367	95072846	40461901	58	13527										
MYOF	0	genome.wustl.edu	37	chr10	95185852	95185852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	catgcctggcacgctgggccCgctcaggtcatttggatgtg	14	12	2	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	95185852	95185852	C	T	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.409	p.G137R	0.990	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	187	0	0	132	26	16.35	-	-	-	T	95185852	C	T	95185852	3	4	218	1	0	0	0	0	1	0	0	0	10161	652	23	1	5976	1	MYOF	10	95185852	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	113006	95185852	40348895	59	13528										
PLCE1	0	genome.wustl.edu	37	chr10	96018630	96018630	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ttcagagcttcatggtttcaGatagcaacatgagttttgtt	9	6	3	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	96018630	96018630	G	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.3628	p.D1210N	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	437	0	0	278	39	12.3	-	-	-	A	96018630	G	A	96018630	3	1	218	1	0	0	0	0	1	0	0	0	12108	942	33	2	3956	2	PLCE1	10	96018630	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	832778	96018630	39516117	60	13529										
PSD	0	genome.wustl.edu	37	chr10	104170687	104170687	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccgatgaagtccccgcaggtCatgcgcttcccgatgttcta	10	14	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	10	104170687	104170687	C	T	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	missense	c.2019	p.M673I	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	59	0	0	25	9	26.47	-	-	-	T	104170687	C	T	104170687	3	4	218	1	0	0	0	0	1	0	0	0	12726	826	29	2	1087	2	PSD	10	104170687	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	8152057	104170687	31364060	61	13530										
OR4A47	0	genome.wustl.edu	37	chr11	48511196	48511196	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccaatgctgaaccccttaatCtacactctgagaaattctga	5	12	3	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	11	48511196	48511196	C	A	SNP	OR4A47	ENST00000446524	human	ensembl	69_37n	1	known	silent	c.852	p.I284	0.987	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388	269	1	0.37	138	48	25.81	-	-	-	A	48511196	C	A	48511196	2	1	218	1	0	0	0	0	0	0	0	1	11115	903	32	2		2	OR4A47	11	48511196	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		48511196	86495320	62	13531										
TRIM49	0	genome.wustl.edu	37	chr11	89537373	89537373	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agtgccacacatttgctcctCagagctcaggaatagccaga	9	12	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	11	89537373	89537373	C	G	SNP	TRIM49	ENST00000329758	human	ensembl	69_37n	-1	known	missense	c.265	p.E89Q	0.596	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49	HGNC	ENSG00000168930	67	0	0	20	8	28.57	-	-	-	G	89537373	C	G	89537373	3	3	218	1	0	0	0	0	1	0	0	0	16620	835	29	2	1117	2	TRIM49	11	89537373	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	41026177	89537373	45469143	63	13532										
ZBTB16	0	genome.wustl.edu	37	chr11	113935031	113935031	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atctgggcatctactccgtgTtgcccaaccacaaggctgac	9	14	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	11	113935031	113935031	T	G	SNP	ZBTB16	ENST00000335953	human	ensembl	69_37n	1	known	missense	c.1009	p.L337V	0.988	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	60	0	0	16	14	46.67	-	-	-	G	113935031	T	G	113935031	3	3	218	1	0	0	0	0	1	0	0	0	17622	1722	60	5	1011	5	ZBTB16	11	113935031	Missense_Mutation	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	24397658	113935031	21071485	64	13533										
ALDH1L2	0	genome.wustl.edu	37	chr12	105467686	105467686	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctggaactgtgaacacccctActactcggtggccctctttg	9	14	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	12	105467686	105467686	A	G	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.146	p.V49A	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	229	0	0	167	69	29.11	-	-	-	G	105467686	A	G	105467686	3	3	218	1	0	0	0	0	1	0	0	0	495	391	14	5	2713	5	ALDH1L2	12	105467686	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09		105467686	28384209	65	13534										
DHX37	0	genome.wustl.edu	37	chr12	125435302	125435302	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aaactcggggagctctttgaAaaggacggagctggggtgga	17	6	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	12	125435302	125435302	A	T	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.2917	p.F973I	0.997	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	130	0	0	138	28	16.77	-	-	-	T	125435302	A	T	125435302	3	4	218	1	0	0	0	0	1	0	0	0	4546	14	1	5	580	5	DHX37	12	125435302	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	19967616	125435302	8416593	66	13535										
SACS	0	genome.wustl.edu	37	chr13	23906002	23906002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gaactgttcagaagacaagaGtaactgcaatcttccttgaa	8	8	2	4			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	13	23906002	23906002	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.12013	p.L4005F	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	138	0	0	50	17	25.37	-	-	-	A	23906002	G	A	23906002	3	1	218	1	0	0	0	0	1	0	0	0	13890	1029	36	4	1730	4	SACS	13	23906002	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		23906002	91263876	67	13536										
NUPL1	0	genome.wustl.edu	37	chr13	25889548	25889548	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gaactacagcagctacttcaActgcaggcaatgaaggcctt	9	11	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	13	25889548	25889548	A	T	SNP	NUPL1	ENST00000381736	human	ensembl	69_37n	1	known	missense	c.628	p.T210S	0.257	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	387	0	0	149	106	41.57	-	-	-	T	25889548	A	T	25889548	3	4	218	1	0	0	0	0	1	0	0	0	10847	43	2	5	650	5	NUPL1	13	25889548	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	1983546	25889548	89280330	68	13537										
NUFIP1	0	genome.wustl.edu	37	chr13	45554947	45554947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aaaaagtgaaaaactggttcCtttcttttctgcaaacaaaa	5	7	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	13	45554947	45554947	C	T	SNP	NUFIP1	ENST00000379161	human	ensembl	69_37n	-1	known	silent	c.504	p.K168	1.000	NULL	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635	237	0	0	124	23	15.65	-	-	-	T	45554947	C	T	45554947	2	4	218	1	0	0	0	0	0	0	0	1	10821	680	24	4		4	NUFIP1	13	45554947	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	19665399	45554947	69614931	69	13538										
CAB39L	0	genome.wustl.edu	37	chr13	49925033	49925033	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atcccacaacgtaaggcaatCtgtggggcttcatatctaaa	8	10	3	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	13	49925033	49925033	C	T	SNP	CAB39L	ENST00000347776	human	ensembl	69_37n	-1	known	silent	c.411	p.Q137	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547	85	0	0	67	23	25.56	-	-	-	T	49925033	C	T	49925033	2	4	218	1	0	0	0	0	0	0	0	1	2551	912	32	2		2	CAB39L	13	49925033	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	4370086	49925033	65244845	70	13539										
MYO16	0	genome.wustl.edu	37	chr13	109445934	109445936	+	In_Frame_Del	DEL	CTT	CTT	-													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atgttaacagatgtcaaacaCttcttatcatctggaggaaa							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	13	109445934	109445936	CTT	-	DEL	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	in_frame_del	c.621_623	p.F208in_frame_del	1.000:1.000:1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	118	0	0	28	7	19.44	-	-	-	-	109445936	CTT	-	109445934	7	5	218	1	0	1	0	1	0	0	0	0	10136	564	20	0	639	0	MYO16	13	109445934	In_Frame_Del	DEL	CTT	TCGA-A8-A09I-01A-22W-A050-09	59520901	109445934	5723944	71	13540										
CHD8	0	genome.wustl.edu	37	chr14	21862470	21862470	+	Silent	SNP	G	G	A													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gggggaaggcggcatacttgGcggcacatggccacaaagcc							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	14	21862470	21862470	G	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	silent	c.5565	p.R1855	0.682	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	253	0	0	166	35	17.41	-	-	-	A	21862470	G	A	21862470	2	1	218	1	0	0	0	0	0	0	0	1	3360	1190	42	4		4	CHD8	14	21862470	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		21862470	85487070	72	13541	157	2								
CHD8	0	genome.wustl.edu	37	chr14	21862471	21862471	+	Missense_Mutation	SNP	C	C	T													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggggaaggcggcatacttggCggcacatggccacaaagcca							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	14	21862471	21862471	C	T	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.5564	p.R1855H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	257	0	0	166	36	17.82	-	-	-	T	21862471	C	T	21862471	3	4	218	1	0	0	0	0	1	0	0	0	3360	768	27	1	2213	1	CHD8	14	21862471	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	1	21862471	85487069	73	13542	157	2								
HAUS4	0	genome.wustl.edu	37	chr14	23419608	23419608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgctgtagccgagccctcatCcacacaaaatcctacagtca	6	15	2	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	14	23419608	23419608	C	G	SNP	HAUS4	ENST00000206474	human	ensembl	69_37n	-1	known	missense	c.477	p.W159C	0.486	NULL	NULL	-	no_errors	HAUS4	HGNC	ENSG00000092036	111	0	0	163	27	14.21	-	-	-	G	23419608	C	G	23419608	3	3	218	1	0	0	0	0	1	0	0	0	7019	856	30	2	634	2	HAUS4	14	23419608	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	1557137	23419608	83929932	74	13543										
PCK2	0	genome.wustl.edu	37	chr14	24572735	24572735	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccagggaagatcatcatgcaCgacccatttgccatgcggcc	10	14	2	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	14	24572735	24572735	C	T	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	silent	c.1485	p.H495	0.077	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	117	0	0	37	10	21.28	-	-	-	T	24572735	C	T	24572735	2	4	218	1	0	0	0	0	0	0	0	1	11655	535	19	1		1	PCK2	14	24572735	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	1153127	24572735	82776805	75	13544										
ZNF770	0	genome.wustl.edu	37	chr15	35273900	35273900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cctgtgactctgccttaactCctgacatttgatctgactct	6	13	3	4			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	15	35273900	35273900	C	T	SNP	ZNF770	ENST00000356321	human	ensembl	69_37n	-1	known	missense	c.1736	p.G579E	0.988	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146	73	0	0	30	15	32.61	-	-	-	T	35273900	C	T	35273900	3	4	218	1	0	0	0	0	1	0	0	0	18237	855	30	2	343	2	ZNF770	15	35273900	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		35273900	67257492	76	13545										
RPAP1	0	genome.wustl.edu	37	chr15	41823388	41823388	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgtgagatctcaagaaagcaAccaagctggggtctagaggc	13	8	2	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	15	41823388	41823388	A	T	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	missense	c.776	p.V259D	1.000	pfam_RNA_pol_II_AP1_N	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	80	0	0	93	22	19.13	-	-	-	T	41823388	A	T	41823388	3	4	218	1	0	0	0	0	1	0	0	0	13627	43	2	5	3481	5	RPAP1	15	41823388	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	6549488	41823388	60708004	77	13546										
MGA	0	genome.wustl.edu	37	chr15	42003252	42003252	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ttcaccaaagcagaaatactCtcatgtgattctaggagata	7	8	3	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	15	42003252	42003252	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.2789	p.S930C	0.064	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	98	0	0	65	33	33.67	-	-	-	G	42003252	C	G	42003252	3	3	218	1	0	0	0	0	1	0	0	0	9611	913	32	2	2815	2	MGA	15	42003252	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	179864	42003252	60528140	78	13547										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84611516	84611516	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cagtttgactgccctcctggCtggcacattgaagaatggca	11	11	0	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	15	84611516	84611516	C	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.2286	p.G762	0.650	smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	245	0	0	81	63	43.75	-	-	-	A	84611516	C	A	84611516	2	1	218	1	0	0	0	0	0	0	0	1	276	784	28	4		4	ADAMTSL3	15	84611516	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	42608264	84611516	17919876	79	13548										
ZSCAN2	0	genome.wustl.edu	37	chr15	85165048	85165048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gtgcggcaagagcttcagccGgggctccattctggtcatgc	14	12	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	15	85165048	85165048	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	missense	c.1622	p.R541Q	0.597	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	144	1	0.69	77	63	44.68	-	-	-	A	85165048	G	A	85165048	3	1	218	1	0	0	0	0	1	0	0	0	18323	1116	39	1	1718	1	ZSCAN2	15	85165048	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	553532	85165048	17366344	80	13549										
MLST8	0	genome.wustl.edu	37	chr16	2258236	2258237	+	Frame_Shift_Ins	INS	-	-	G													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgctatgtctggaatctgacINSggggggcattggtgacgagg							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	2258236	2258237	-	G	INS	MLST8	ENST00000397124	human	ensembl	69_37n	1	known	frame_shift_ins	c.599_600	p.I203fs	1.000:0.005	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	MLST8	HGNC	ENSG00000167965	28	0	0	33	4	10.81	-	-	-	G	2258237	-	G	2258236	7	5	218	1	0	1	1	0	0	0	0	0	9705	536	19	0	621	0	MLST8	16	2258236	Frame_Shift_Ins	INS	-	TCGA-A8-A09I-01A-22W-A050-09		2258236	88096517	81	13550										
GSPT1	0	genome.wustl.edu	37	chr16	11980419	11980419	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aatgtcctttttgggattgaAgccaacttttttcaaaaatg	7	6	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	11980419	11980419	A	G	SNP	GSPT1	ENST00000434724	human	ensembl	69_37n	-1	known	missense	c.1162	p.F388L	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT1	HGNC	ENSG00000103342	153	0	0	120	26	17.69	-	-	-	G	11980419	A	G	11980419	3	3	218	1	0	0	0	0	1	0	0	0	6877	72	3	5	779	5	GSPT1	16	11980419	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	9722183	11980419	78374334	82	13551										
HS3ST2	0	genome.wustl.edu	37	chr16	22926408	22926408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgtgcggaaccctgtgacccGtgccatctctgattacacgc	10	14	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	22926408	22926408	G	A	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	missense	c.629	p.R210H	0.908	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	188	0	0	126	30	19.11	-	-	-	A	22926408	G	A	22926408	3	1	218	1	0	0	0	0	1	0	0	0	7415	1145	40	1	635	1	HS3ST2	16	22926408	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	10945989	22926408	67428345	83	13552										
ALDOA	0	genome.wustl.edu	37	chr16	30081176	30081176	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	accttcctgtctggaggccaGagtgaggaggaggcgtccat	15	10	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	30081176	30081176	G	C	SNP	ALDOA	ENST00000338110	human	ensembl	69_37n	1	known	missense	c.825	p.Q275H	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	41	0	0	26	12	31.58	-	-	-	C	30081176	G	C	30081176	3	2	218	1	0	0	0	0	1	0	0	0	507	933	33	2	851	2	ALDOA	16	30081176	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	7154768	30081176	60273577	84	13553										
SLC7A6OS	0	genome.wustl.edu	37	chr16	68335255	68335255	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agggtacttgctccacatccGctgtctgctgctgcctcttt	9	14	2	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	68335255	68335255	G	C	SNP	SLC7A6OS	ENST00000263997	human	ensembl	69_37n	-1	known	missense	c.853	p.R285G	0.001	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061	180	0	0	107	66	38.15	-	-	-	C	68335255	G	C	68335255	3	2	218	1	0	0	0	0	1	0	0	0	14791	1086	38	3	80	3	SLC7A6OS	16	68335255	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	38254079	68335255	22019498	85	13554										
FANCA	0	genome.wustl.edu	37	chr16	89877135	89877135	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctgtattttccataattcttGacagaaggaaagacgggaga	10	6	1	4			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	16	89877135	89877135	G	C	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.502	p.Q168E	1.000	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	36	0	0	39	15	27.78	-	-	-	C	89877135	G	C	89877135	3	2	218	1	0	0	0	0	1	0	0	0	5708	1299	45	2	4026	2	FANCA	16	89877135	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	21541880	89877135	477618	86	13555										
SLC25A11	0	genome.wustl.edu	37	chr17	4842372	4842372	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tacccagtgtaaatgcccctCaggccttctgccttcaggat	8	14	3	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	4842372	4842372	C	G	SNP	SLC25A11	ENST00000225665	human	ensembl	69_37n	-1	known	silent	c.231	p.L77	0.006	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A11	HGNC	ENSG00000108528	161	0	0	73	16	17.98	-	-	-	G	4842372	C	G	4842372	2	3	218	1	0	0	0	0	0	0	0	1	14562	813	29	2		2	SLC25A11	17	4842372	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		4842372	76352838	87	13556										
SLC16A11	0	genome.wustl.edu	37	chr17	6945481	6945482	+	Frame_Shift_Ins	INS	-	-	C													0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cagccgcggccagcaggggaINScccccccagctctcttcgcc							TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	6945481	6945482	-	C	INS	SLC16A11	ENST00000308009	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1020_1019	p.P341fs	0.001:0.191	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326	29	0	0	4	2	33.33	-	-	-	C	6945482	-	C	6945481	7	5	218	1	0	1	1	0	0	0	0	0	14493	262	10	0	403	0	SLC16A11	17	6945481	Frame_Shift_Ins	INS	-	TCGA-A8-A09I-01A-22W-A050-09	2103109	6945481	74249729	88	13557										
NCOR1	0	genome.wustl.edu	37	chr17	15975531	15975531	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	actccccctgggtaatgctcGgcatatcagcccttccaaaa	7	15	1	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	15975531	15975531	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.3823	p.R1275*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	76	0	0	20	26	56.52	-	-	-	A	15975531	G	A	15975531	4	1	218	1	0	0	0	0	0	1	0	0	10307	1124	39	1	3571	1	NCOR1	17	15975531	Nonsense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	9030050	15975531	65219679	89	13558										
SLC6A4	0	genome.wustl.edu	37	chr17	28538331	28538331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccccttcccatttcctcaccGtgctgtccaagcccagcgtg	7	19	1	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	28538331	28538331	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	69_37n	-1	known	missense	c.1316	p.T439M	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	165	0	0	135	41	23.3	-	-	-	A	28538331	G	A	28538331	3	1	218	1	0	0	0	0	1	0	0	0	14775	1159	40	1	600	1	SLC6A4	17	28538331	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	12562800	28538331	52656879	90	13559										
FNDC8	0	genome.wustl.edu	37	chr17	33456560	33456560	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aagaatcgtccatggatcttCaacaagattttgggcactac	8	9	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	33456560	33456560	C	T	SNP	FNDC8	ENST00000158009	human	ensembl	69_37n	1	known	silent	c.705	p.F235	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC8	HGNC	ENSG00000073598	114	0	0	266	267	49.91	-	-	-	T	33456560	C	T	33456560	2	4	218	1	0	0	0	0	0	0	0	1	6020	825	29	2		2	FNDC8	17	33456560	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	4918229	33456560	47738650	91	13560										
GPATCH8	0	genome.wustl.edu	37	chr17	42477554	42477554	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agaccctgaagcaggtgcgtCcattctgcctcctgaggaac	11	13	1	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	42477554	42477554	C	G	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	missense	c.1891	p.D631H	0.580	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	187	0	0	55	16	21.92	-	-	-	G	42477554	C	G	42477554	3	3	218	1	0	0	0	0	1	0	0	0	6644	855	30	2	2621	2	GPATCH8	17	42477554	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	9020994	42477554	38717656	92	13561										
C17orf104	0	genome.wustl.edu	37	chr17	42744610	42744610	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cgtcacagaaaagcaacagtTtgctaaacctgatcccccac	6	14	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	42744610	42744610	T	C	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.1331	p.F444S	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	50	0	0	14	16	53.33	-	-	-	C	42744610	T	C	42744610	3	2	218	1	0	0	0	0	1	0	0	0	1864	1841	64	5	1349	5	C17orf104	17	42744610	Missense_Mutation	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	267056	42744610	38450600	93	13562										
RAD51C	0	genome.wustl.edu	37	chr17	56811530	56811530	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ctgcatgttcattgcaaacaGaaggttccttgagcacccgg	10	11	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	56811530	56811530	G	C	SNP	RAD51C	ENST00000337432	human	ensembl	69_37n	1	known	missense	c.1078	p.E360Q	0.996	NULL	pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	RAD51C	HGNC	ENSG00000108384	112	0	0	115	139	54.51	-	-	-	C	56811530	G	C	56811530	3	2	218	1	0	0	0	0	1	0	0	0	13071	943	33	2	1116	2	RAD51C	17	56811530	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	14066920	56811530	24383680	94	13563										
LLGL2	0	genome.wustl.edu	37	chr17	73564904	73564904	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ccccagccccaccccagaggGacctgctgctcacagggtag	11	18	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	73564904	73564904	G	C	SNP	LLGL2	ENST00000392550	human	ensembl	69_37n	1	known	missense	c.1306	p.D436H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	56	0	0	34	12	25.53	-	-	-	C	73564904	G	C	73564904	3	2	218	1	0	0	0	0	1	0	0	0	8890	1174	41	2	1383	2	LLGL2	17	73564904	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	16753374	73564904	7630306	95	13564										
RNF213	0	genome.wustl.edu	37	chr17	78313852	78313852	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cacaaggtctacagcctgctGttcgcagatcagctgagcta	10	12	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	17	78313852	78313852	G	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.5685	p.L1895	0.565	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	60	0	0	32	4	11.11	-	-	-	C	78313852	G	C	78313852	2	2	218	1	0	0	0	0	0	0	0	1	13563	1364	48	4		4	RNF213	17	78313852	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	4748948	78313852	2881358	96	13565										
DLGAP1	0	genome.wustl.edu	37	chr18	3879838	3879838	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tcgtccttcagctcttgctgCgaggtgtagtgcctgcgggg	15	11	2	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	18	3879838	3879838	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	silent	c.231	p.S77	0.964	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	88	0	0	22	13	37.14	-	-	-	T	3879838	C	T	3879838	2	4	218	1	0	0	0	0	0	0	0	1	4595	755	27	1		1	DLGAP1	18	3879838	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		3879838	74197410	97	13566										
KLHL14	0	genome.wustl.edu	37	chr18	30321922	30321922	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ttccatgtcttcttttcatcGtcgtaatactgaaccaaatt	4	10	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	18	30321922	30321922	G	A	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	silent	c.1038	p.D346	0.815	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	161	0	0	89	13	12.62	-	-	-	A	30321922	G	A	30321922	2	1	218	1	0	0	0	0	0	0	0	1	8423	1136	40	1		1	KLHL14	18	30321922	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	26442084	30321922	47755326	98	13567										
SETBP1	0	genome.wustl.edu	37	chr18	42643228	42643228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggcaacaacttcgtgaagaaGaggcgcgggcgtcccaggaa	15	10	0	3			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	18	42643228	42643228	G	C	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.4356	p.K1452N	1.000	smart_AT_hook_DNA-bd_motif	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	70	0	0	36	6	14.29	-	-	-	C	42643228	G	C	42643228	3	2	218	1	0	0	0	0	1	0	0	0	14217	933	33	2	4567	2	SETBP1	18	42643228	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	12321306	42643228	35434020	99	13568										
TSHZ1	0	genome.wustl.edu	37	chr18	72998075	72998075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gaacaacaagctctacggctCcgtcttcacgggcgccagca	10	15	3	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	18	72998075	72998075	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.713	p.S238F	0.003	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	99	0	0	54	7	11.48	-	-	-	T	72998075	C	T	72998075	3	4	218	1	0	0	0	0	1	0	0	0	16719	855	30	2	580	2	TSHZ1	18	72998075	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	30354847	72998075	5079173	100	13569										
CIRBP	0	genome.wustl.edu	37	chr19	1272368	1272368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gccctggtctggcctctgggGtgaagctgcctcttgttgct	14	12	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	1272368	1272368	G	A	SNP	CIRBP	ENST00000444172	human	ensembl	69_37n	1	known	missense	c.661	p.V221M	0.794	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622	64	0	0	51	19	27.14	-	-	-	A	1272368	G	A	1272368	3	1	218	1	0	0	0	0	1	0	0	0	3462	1276	44	4		4	CIRBP	19	1272368	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		1272368	57856615	101	13570										
SHD	0	genome.wustl.edu	37	chr19	4284824	4284824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aggactccaggctcagccaaGgagctccggagacctccgcc	12	16	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	4284824	4284824	G	T	SNP	SHD	ENST00000543264	human	ensembl	69_37n	1	known	missense	c.639	p.K213N	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHD	HGNC	ENSG00000105251	36	0	0	27	7	20.59	-	-	-	T	4284824	G	T	4284824	3	4	218	1	0	0	0	0	1	0	0	0	14364	991	35	4	653	4	SHD	19	4284824	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	3012456	4284824	54844159	102	13571										
WDR83	0	genome.wustl.edu	37	chr19	12783926	12783926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aagacacaggggagctgctgGgcgagtgagtccttgtggtc	17	8	0	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	12783926	12783926	G	T	SNP	WDR83	ENST00000242796	human	ensembl	69_37n	1	known	missense	c.679	p.G227C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR83	HGNC	ENSG00000123154	230	0	0	101	14	12.17	-	-	-	T	12783926	G	T	12783926	3	4	218	1	0	0	0	0	1	0	0	0	17429	1232	43	4	705	4	WDR83	19	12783926	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	8499102	12783926	46345057	103	13572										
PRODH2	0	genome.wustl.edu	37	chr19	36303324	36303324	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gccagcagtggtcggaggctGagggtccgcagctgctgcac	17	12	0	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	36303324	36303324	G	A	SNP	PRODH2	ENST00000301175	human	ensembl	69_37n	-1	known	silent	c.537	p.L179	0.000	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	57	0	0	42	7	14.29	-	-	-	A	36303324	G	A	36303324	2	1	218	1	0	0	0	0	0	0	0	1	12630	1277	45	2		2	PRODH2	19	36303324	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	23519398	36303324	22825659	104	13573										
CA11	0	genome.wustl.edu	37	chr19	49142645	49142645	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cggggtgctgagagagccctGataggtgatgaagccgaagg	18	7	0	5			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	49142645	49142645	G	A	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	nonsense	c.712	p.Q238*	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	188	0	0	113	26	18.44	-	-	-	A	49142645	G	A	49142645	4	1	218	1	0	0	0	0	0	1	0	0	2537	1299	45	2	286	2	CA11	19	49142645	Nonsense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	12839321	49142645	9986338	105	13574										
SIGLEC5	0	genome.wustl.edu	37	chr19	52149665	52149665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	catccccaaggaggcggaatCggccctgggtctctggcttc	13	14	1	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	52149665	52149665	C	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	missense	c.266	p.R89Q	0.172	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	161	0	0	94	26	21.67	-	-	-	T	52149665	C	T	52149665	3	4	218	1	0	0	0	0	1	0	0	0	14400	884	31	1		1	SIGLEC5	19	52149665	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	3007020	52149665	6979318	106	13575										
LILRA1	0	genome.wustl.edu	37	chr19	55106642	55106642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	ggaacgtgaccctccattgtGtctcacaggtggcatttggc	12	11	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	55106642	55106642	G	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.436	p.V146F	0.072	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	248	0	0	94	26	21.67	-	-	-	T	55106642	G	T	55106642	3	4	218	1	0	0	0	0	1	0	0	0	8839	1377	48	4	450	4	LILRA1	19	55106642	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	2956977	55106642	4022341	107	13576										
ZNF549	0	genome.wustl.edu	37	chr19	58049495	58049495	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aatcttttattcattcctatGaccgcattcgacaccagaga	5	11	2	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	19	58049495	58049495	G	A	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.1123	p.D375N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	184	0	0	102	34	25	-	-	-	A	58049495	G	A	58049495	3	1	218	1	0	0	0	0	1	0	0	0	18077	1290	45	2	1094	2	ZNF549	19	58049495	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	2942853	58049495	1079488	108	13577										
MACROD2	0	genome.wustl.edu	37	chr20	15918186	15918186	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	cagttgaagactgtaaagatGaaggtatgaggctactaact	11	5	0	5			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	20	15918186	15918186	G	A	SNP	MACROD2	ENST00000310348	human	ensembl	69_37n	1	known	missense	c.904	p.E302K	0.998	NULL	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD2	HGNC	ENSG00000172264	144	0	0	110	24	17.78	-	-	-	A	15918186	G	A	15918186	3	1	218	1	0	0	0	0	1	0	0	0	9213	1291	45	2	950	2	MACROD2	20	15918186	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		15918186	47107334	109	13578										
BACE2	0	genome.wustl.edu	37	chr21	42609558	42609558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	aaggcttcaatacttcttttCttgtcaacattgccactatt	4	10	4	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	21	42609558	42609558	C	G	SNP	BACE2	ENST00000330333	human	ensembl	69_37n	1	known	missense	c.520	p.L174V	0.005	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Peptidase_A1,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240	77	0	0	42	13	23.21	-	-	-	G	42609558	C	G	42609558	3	3	218	1	0	0	0	0	1	0	0	0	1286	913	32	2	530	2	BACE2	21	42609558	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09		42609558	5520337	110	13579										
PI4KA	0	genome.wustl.edu	37	chr22	21119129	21119129	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgtactccagccggtacacaGagaggaggtaggtggacatg	15	8	0	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	22	21119129	21119129	G	T	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.2684	p.S895Y	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	55	0	0	25	5	16.67	-	-	-	T	21119129	G	T	21119129	3	4	218	1	0	0	0	0	1	0	0	0	11947	942	33	2	3760	2	PI4KA	22	21119129	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		21119129	30185437	111	13580										
PRPS2	0	genome.wustl.edu	37	chrX	12817443	12817443	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atcaatgcctgcaagattgcGtcatcatccagagtaactgc	8	11	3	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	12817443	12817443	G	A	SNP	PRPS2	ENST00000398491	human	ensembl	69_37n	1	known	silent	c.240	p.A80	0.006	tigrfam_Rib-P_diPkinase	pfam_PRibTrfase,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS2	HGNC	ENSG00000101911	168	0	0	114	15	11.54	-	-	-	A	12817443	G	A	12817443	2	1	218	1	0	0	0	0	0	0	0	1	12661	1132	40	1		1	PRPS2	23	12817443	Silent	SNP	G	TCGA-A8-A09I-01A-22W-A050-09		12817443	142453117	112	13581										
SCML1	0	genome.wustl.edu	37	chrX	17768275	17768275	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgcatccctcagatttctctGagcataattgtcagccgtat	7	11	3	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	17768275	17768275	G	T	SNP	SCML1	ENST00000380041	human	ensembl	69_37n	1	known	nonsense	c.565	p.E189*	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634	197	0	0	54	21	28	-	-	-	T	17768275	G	T	17768275	4	4	218	1	0	0	0	0	0	1	0	0	13997	1291	45	2	586	2	SCML1	23	17768275	Nonsense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	4950832	17768275	137502285	113	13582										
GPR64	0	genome.wustl.edu	37	chrX	19021145	19021145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	atcttatacagagcaatccaCgagtccaggaggaagaccag	10	10	1	2			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	19021145	19021145	C	T	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	silent	c.2049	p.S683	0.123	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	147	1	0.68	88	18	16.82	-	-	-	T	19021145	C	T	19021145	2	4	218	1	0	0	0	0	0	0	0	1	6755	523	19	1		1	GPR64	23	19021145	Silent	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	1252870	19021145	136249415	114	13583										
HUWE1	0	genome.wustl.edu	37	chrX	53560335	53560335	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tagcatgtggcggagcttctCaaagctctcataggcaggca	12	10	2	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	53560335	53560335	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.13060	p.E4354Q	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	109	0	0	95	20	17.39	-	-	-	G	53560335	C	G	53560335	3	3	218	1	0	0	0	0	1	0	0	0	7515	835	29	2	68	2	HUWE1	23	53560335	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	34539190	53560335	101710225	115	13584										
HUWE1	0	genome.wustl.edu	37	chrX	53562391	53562391	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tgtacatactccttcttattCtcctctgttaccaagatgtt	4	11	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	53562391	53562391	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12603	p.E4201D	0.992	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	230	0	0	189	52	21.49	-	-	-	G	53562391	C	G	53562391	3	3	218	1	0	0	0	0	1	0	0	0	7515	912	32	2	537	2	HUWE1	23	53562391	Missense_Mutation	SNP	C	TCGA-A8-A09I-01A-22W-A050-09	2056	53562391	101708169	116	13585										
HDAC8	0	genome.wustl.edu	37	chrX	71681927	71681927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	agtatgtccagcatcgagccGtgttggcaaggttatagcct	12	9	0	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	71681927	71681927	G	A	SNP	HDAC8	ENST00000373573	human	ensembl	69_37n	-1	known	missense	c.932	p.T311M	0.994	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099	253	0	0	144	28	16.28	-	-	-	A	71681927	G	A	71681927	3	1	218	1	0	0	0	0	1	0	0	0	7064	1145	40	1	213	1	HDAC8	23	71681927	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	18119536	71681927	83588633	117	13586										
GPRASP2	0	genome.wustl.edu	37	chrX	101969921	101969921	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	tggtcagacccaaggttaggAcccaggcaactactggggca	13	11	1	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	101969921	101969921	A	T	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.124	p.T42S	0.127	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	235	0	0	131	25	15.72	-	-	-	T	101969921	A	T	101969921	3	4	218	1	0	0	0	0	1	0	0	0	6774	275	10	5	126	5	GPRASP2	23	101969921	Missense_Mutation	SNP	A	TCGA-A8-A09I-01A-22W-A050-09	30287994	101969921	53300639	118	13587										
BCORL1	0	genome.wustl.edu	37	chrX	129147771	129147771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	actccggttctggctcccatGccagcatccacgcctccagc	8	19	1	0			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	129147771	129147771	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.1023	p.M341I	0.916	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	75	0	0	55	13	19.12	-	-	-	A	129147771	G	A	129147771	3	1	218	1	0	0	0	0	1	0	0	0	1391	1319	46	4	1033	4	BCORL1	23	129147771	Missense_Mutation	SNP	G	TCGA-A8-A09I-01A-22W-A050-09	27177850	129147771	26122789	119	13588										
MAGEA12	0	genome.wustl.edu	37	chrX	151900209	151900209	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	34	3.2315705084824e-07	2.6984126984127	3.95061728395062	2.10526315789474	0.815775793843827	1	21	gattatcaggaggcctgtctTgggcacgatctgattgtcgc	13	9	3	1			TCGA-A8-A09I-01A-22W-A050-09	TCGA-A8-A09I-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96d5070d-1fa9-4fa5-b2c9-472240dfd3b9	ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac	X	151900209	151900209	T	A	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	nonsense	c.592	p.K198*	0.039	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	363	0	0	174	31	15.12	-	-	-	A	151900209	T	A	151900209	4	1	218	1	0	0	0	0	0	1	0	0	9233	1821	63	5	356	5	MAGEA12	23	151900209	Nonsense_Mutation	SNP	T	TCGA-A8-A09I-01A-22W-A050-09	22752438	151900209	3370351	120	13589										
CASZ1	0	genome.wustl.edu	37	chr1	10719985	10719985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gacgtcgtacttggaagggcGccccaccttgcctgtcttga	12	13	1	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	10719985	10719985	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.1114	p.R372C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	45	0	0	32	7	17.95	-	-	-	A	10719985	G	A	10719985	3	1	219	1	0	0	0	0	1	0	0	0	2710	1087	38	1	4233	1	CASZ1	1	10719985	Missense_Mutation	SNP	G	TCGA-A8-A09K-01A-11W-A019-09		10719985	238530636	1	13590										
SLC22A15	0	genome.wustl.edu	37	chr1	116609327	116609327	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tacaggctttggacccccaaCaggtgtgatatttttcttaa	8	9	1	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	116609327	116609327	C	T	SNP	SLC22A15	ENST00000369503	human	ensembl	69_37n	1	known	nonsense	c.1552	p.Q518*	0.994	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393	57	0	0	50	12	19.35	-	-	-	T	116609327	C	T	116609327	4	4	219	1	0	0	0	0	0	1	0	0	14535	479	17	4	1594	4	SLC22A15	1	116609327	Nonsense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	105889342	116609327	132641294	2	13591										
THBS3	0	genome.wustl.edu	37	chr1	155169883	155169883	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ggttggggactttagggcaaTtgtccaatccattggggatg	15	6	0	0			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	155169883	155169883	T	A	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.1730	p.N577I	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	71	0	0	46	41	47.13	-	-	-	A	155169883	T	A	155169883	3	1	219	1	0	0	0	0	1	0	0	0	15950	1493	52	5	1176	5	THBS3	1	155169883	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09	38560556	155169883	94080738	3	13592										
RGS7	0	genome.wustl.edu	37	chr1	241094016	241094016	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ataatgagagatggcactgaCcataatctgtgttttccggc	10	8	1	3			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	241094016	241094016	C	T	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	splice_site	c.385+1	e5+1	1.000	-	-	-	no_errors	RGS7	HGNC	ENSG00000182901	505	0	0	346	182	34.47	-	-	-	T	241094016	C	T	241094016	5	4	219	1	0	0	0	0	0	0	1	0	13394	521	18	4	1129	4	RGS7	1	241094016	Splice_Site	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	85924133	241094016	8156605	4	13593										
AFF3	0	genome.wustl.edu	37	chr2	100194818	100194820	+	In_Frame_Del	DEL	GCA	GCA	-													0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	aagacaagtttctgcctcttGcagtccctgtggccgttgga							TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194818	100194820	GCA	-	DEL	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	in_frame_del	c.2964_2962	p.C988in_frame_del	1.000:1.000:1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	126	0	0	105	29	21.48	-	-	-	-	100194820	GCA	-	100194818	7	5	219	1	0	1	0	1	0	0	0	0	358	1311	46	0	823	0	AFF3	2	100194818	In_Frame_Del	DEL	GCA	TCGA-A8-A09K-01A-11W-A019-09		100194818	143004555	5	13594	158	2								
AFF3	0	genome.wustl.edu	37	chr2	100194823	100194824	+	Frame_Shift_Del	DEL	CC	CC	-													0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	aagtttctgcctcttgcagtCcctgtggccgttggagcctg							TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194823	100194824	CC	-	DEL	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	frame_shift_del	c.2959_2958	p.D987fs	1.000:0.993	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	124	0	0	79	27	25.47	-	-	-	-	100194824	CC	-	100194823	7	5	219	1	0	1	0	1	0	0	0	0	358	855	30	0	828	0	AFF3	2	100194823	Frame_Shift_Del	DEL	CC	TCGA-A8-A09K-01A-11W-A019-09	5	100194823	143004550	6	13595	158	2								
SEPT2	0	genome.wustl.edu	37	chr2	242276852	242276852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ttgagaggtacctgcatgacGagagcggcttgaacaggcgg	16	8	0	4			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	242276852	242276852	G	A	SNP	SEPT2	ENST00000360051	human	ensembl	69_37n	1	known	missense	c.397	p.E133K	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385	482	0	0	262	233	47.07	-	-	-	A	242276852	G	A	242276852	3	1	219	1	0	0	0	0	1	0	0	0	14152	1059	37	1	415	1	SEPT2	2	242276852	Missense_Mutation	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	142082029	242276852	922521	7	13596										
CAPN7	0	genome.wustl.edu	37	chr3	15270481	15270481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ttaattattcttattaacagAcaatagtatcggattgctcc	5	7	1	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	3	15270481	15270481	A	G	SNP	CAPN7	ENST00000253693	human	ensembl	69_37n	1	known	missense	c.853	p.T285A	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN7	HGNC	ENSG00000131375	247	1	0.4	263	158	37.44	-	-	-	G	15270481	A	G	15270481	3	3	219	1	0	0	0	0	1	0	0	0	2656	289	10	5	883	5	CAPN7	3	15270481	Missense_Mutation	SNP	A	TCGA-A8-A09K-01A-11W-A019-09		15270481	182751949	8	13597										
TIGD4	0	genome.wustl.edu	37	chr4	153690942	153690942	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ggaaattctactcctgccccCagagcatcagcaaccaaatc	6	15	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	153690942	153690942	C	G	SNP	TIGD4	ENST00000304337	human	ensembl	69_37n	-1	known	silent	c.1215	p.L405	0.002	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989	238	0	0	127	111	46.64	-	-	-	G	153690942	C	G	153690942	2	3	219	1	0	0	0	0	0	0	0	1	15993	581	21	4		4	TIGD4	4	153690942	Silent	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		153690942	37463334	9	13598										
DCHS2	0	genome.wustl.edu	37	chr4	155242003	155242003	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	acattctcctctacactgatCacaatgagctcatcctggaa	5	13	4	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	155242003	155242003	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.3183	p.V1061	0.980	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	357	0	0	534	73	12.03	-	-	-	T	155242003	C	T	155242003	2	4	219	1	0	0	0	0	0	0	0	1	4319	813	29	2		2	DCHS2	4	155242003	Silent	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	1551061	155242003	35912273	10	13599										
PCDHB12	0	genome.wustl.edu	37	chr5	140590170	140590170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ctcgcccttcgtgctgtaccCgctgcagaacggctccgcgc	11	18	0	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	140590170	140590170	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.1691	p.P564L	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	25	0	0	18	9	33.33	-	-	-	T	140590170	C	T	140590170	3	4	219	1	0	0	0	0	1	0	0	0	11610	652	23	1	1693	1	PCDHB12	5	140590170	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		140590170	40325090	11	13600										
CSF1R	0	genome.wustl.edu	37	chr5	149449828	149449828	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	cacaaaagggtgccagagccGttgatgaatgtccatatgac	11	9	0	4			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	149449828	149449828	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	silent	c.1236	p.N412	0.019	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	CSF1R	HGNC	ENSG00000182578	110	1	0.9	26	15	36.59	-	-	-	A	149449828	G	A	149449828	2	1	219	1	0	0	0	0	0	0	0	1	3964	1136	40	1		1	CSF1R	5	149449828	Silent	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	8859658	149449828	31465432	12	13601										
CSMD1	0	genome.wustl.edu	37	chr8	2820779	2820779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tctctcctttccacaccccgCgaccttcacaggagaggatg	8	16	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	8	2820779	2820779	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9422	p.R3141H	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	127	1	0.78	46	57	55.34	-	-	-	T	2820779	C	T	2820779	3	4	219	1	0	0	0	0	1	0	0	0	3976	768	27	1	1319	1	CSMD1	8	2820779	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		2820779	143543243	13	13602										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112694275	112694275	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gttcacgaacagcagaaccaTcacctgggcaggacgggacc	12	13	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	112694275	112694275	T	A	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.463	p.S155T	0.683	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	169	0	0	220	31	12.25	-	-	-	A	112694275	T	A	112694275	3	1	219	1	0	0	0	0	1	0	0	0	11483	1435	50	5	485	5	PALM2-AKAP2	9	112694275	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09		112694275	28519156	14	13603										
FUBP3	0	genome.wustl.edu	37	chr9	133493263	133493263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	caagcctcttcgtatcactgGagatgcatttaaagtacagg	9	9	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133493263	133493263	G	T	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	missense	c.647	p.G216V	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	40	0	0	11	26	70.27	-	-	-	T	133493263	G	T	133493263	3	4	219	1	0	0	0	0	1	0	0	0	6142	1174	41	2	677	2	FUBP3	9	133493263	Missense_Mutation	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	20798988	133493263	7720168	15	13604										
FUBP3	0	genome.wustl.edu	37	chr9	133498185	133498185	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	atgatgctggtgtgaggattCagtttaaaccaggtgggtat	14	4	1	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133498185	133498185	C	T	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	nonsense	c.862	p.Q288*	1.000	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	158	0	0	67	56	45.53	-	-	-	T	133498185	C	T	133498185	4	4	219	1	0	0	0	0	0	1	0	0	6142	827	29	2	900	2	FUBP3	9	133498185	Nonsense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	4922	133498185	7715246	16	13605										
MYEOV	0	genome.wustl.edu	37	chr11	69063518	69063519	+	Frame_Shift_Ins	INS	-	-	A													0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tatgtgggcgcgaatggatgINStggctctgcgctcacctggg							TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	11	69063518	69063519	-	A	INS	MYEOV	ENST00000308946	human	ensembl	69_37n	1	known	frame_shift_ins	c.601_602	p.V201fs	0.000:0.000	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927	32	0	0	38	25	39.68	-	-	-	A	69063519	-	A	69063518	7	5	219	1	0	1	1	0	0	0	0	0	10097	1377	48	0	607	0	MYEOV	11	69063518	Frame_Shift_Ins	INS	-	TCGA-A8-A09K-01A-11W-A019-09		69063518	65942998	17	13606										
C12orf65	0	genome.wustl.edu	37	chr12	123738230	123738230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gccacgttccttatgagcacCgtgggtttatttcattttcc	8	11	1	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	12	123738230	123738230	C	T	SNP	C12orf65	ENST00000253233	human	ensembl	69_37n	1	known	silent	c.9	p.T3	0.002	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	C12orf65	HGNC	ENSG00000130921	103	0	0	43	50	53.76	-	-	-	T	123738230	C	T	123738230	2	4	219	1	0	0	0	0	0	0	0	1	1720	639	23	1		1	C12orf65	12	123738230	Silent	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		123738230	10113665	18	13607										
GPR137C	0	genome.wustl.edu	37	chr14	53098946	53098946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ctgtactcttccagagcttgTtataatttggtggtggtcac	10	8	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	53098946	53098946	T	C	SNP	GPR137C	ENST00000555622	human	ensembl	69_37n	1	novel	missense	c.581	p.V194A	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR137C	HGNC	ENSG00000180998	77	0	0	33	70	67.31	-	-	-	C	53098946	T	C	53098946	3	2	219	1	0	0	0	0	1	0	0	0	6697	1731	60	5	800	5	GPR137C	14	53098946	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09		53098946	54250594	19	13608										
DYNC1H1	0	genome.wustl.edu	37	chr14	102467927	102467927	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ggttaattatcagaacaagtGccgcttgatccgtggctggg	13	8	1	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	102467927	102467927	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.4451	p.C1484S	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	106	0	0	97	27	21.77	-	-	-	C	102467927	G	C	102467927	3	2	219	1	0	0	0	0	1	0	0	0	4876	1319	46	4	4533	4	DYNC1H1	14	102467927	Missense_Mutation	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	49368981	102467927	4881613	20	13609										
UBFD1	0	genome.wustl.edu	37	chr16	23573549	23573549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	acacaggaaagtgttggataAaggaaaacctgaagatgtga	12	4	0	3			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	23573549	23573549	A	G	SNP	UBFD1	ENST00000219638	human	ensembl	69_37n	1	known	missense	c.1259	p.K420R	1.000	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBFD1	HGNC	ENSG00000103353	80	0	0	73	57	43.85	-	-	-	G	23573549	A	G	23573549	3	3	219	1	0	0	0	0	1	0	0	0	16981	14	1	5	601	5	UBFD1	16	23573549	Missense_Mutation	SNP	A	TCGA-A8-A09K-01A-11W-A019-09		23573549	66781204	21	13610										
ZNF48	0	genome.wustl.edu	37	chr16	30409119	30409119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tcccccaaagattcctcggtCccggatccctgctggtgagc	10	16	0	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	30409119	30409119	C	T	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	missense	c.548	p.S183F	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	40	0	0	30	28	48.28	-	-	-	T	30409119	C	T	30409119	3	4	219	1	0	0	0	0	1	0	0	0	18030	855	30	2	554	2	ZNF48	16	30409119	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	6835570	30409119	59945634	22	13611										
NEURL4	0	genome.wustl.edu	37	chr17	7226882	7226882	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	caggccgaatagcagtcactCctgggaggaggcaggggtaa	16	9	1	0			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	7226882	7226882	C	G	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.2339	p.G780A	1.000	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	26	0	0	1	6	85.71	-	-	-	G	7226882	C	G	7226882	3	3	219	1	0	0	0	0	1	0	0	0	10419	869	30	2	2413	2	NEURL4	17	7226882	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		7226882	73968328	23	13612										
TIAF1	0	genome.wustl.edu	37	chr17	27401124	27401124	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	cggagagcccctccgcacctCattcttaagaacctggaccc	8	17	2	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	27401124	27401124	C	T	SNP	TIAF1	ENST00000359450	human	ensembl	69_37n	-1	known	missense	c.94	p.E32K	0.000	NULL	NULL	-	no_errors	TIAF1	HGNC	ENSG00000221995	82	0	0	69	49	41.53	-	-	-	T	27401124	C	T	27401124	3	4	219	1	0	0	0	0	1	0	0	0	15983	835	29	2	257	2	TIAF1	17	27401124	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	20174242	27401124	53794086	24	13613										
ANKRD12	0	genome.wustl.edu	37	chr18	9256071	9256074	+	Frame_Shift_Del	DEL	AAAC	AAAC	-													0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	acttgatggagaaaaaaaatAaacaatcagataatagtgaa							TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	AAAC	AAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	9256071	9256074	AAAC	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.2806_2809	p.K936fs	0.913:0.899:0.061:0.032	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	206	0	0	324	150	31.65	-	-	-	-	9256074	AAAC	-	9256071	7	5	219	1	0	1	0	1	0	0	0	0	640	363	13	0	2836	0	ANKRD12	18	9256071	Frame_Shift_Del	DEL	AAAC	TCGA-A8-A09K-01A-11W-A019-09		9256071	68821177	25	13614										
NEDD4L	0	genome.wustl.edu	37	chr18	56033400	56033400	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gggtgtggccagagaatggtTcttcttactgtccaaagaga	13	7	2	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	56033400	56033400	T	A	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.2003	p.F668Y	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	62	0	0	48	19	27.94	-	-	-	A	56033400	T	A	56033400	3	1	219	1	0	0	0	0	1	0	0	0	10383	1783	62	5	2113	5	NEDD4L	18	56033400	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09	46777329	56033400	22043848	26	13615										
PKN1	0	genome.wustl.edu	37	chr19	14569083	14569083	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	ctgtgttctggcgggaccagCggggcctgtgtgccctcaaa	15	12	2	0			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	14569083	14569083	C	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	1	known	silent	c.1333	p.R445	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	77	0	0	33	47	58.75	-	-	-	A	14569083	C	A	14569083	2	1	219	1	0	0	0	0	0	0	0	1	12053	759	27	3		3	PKN1	19	14569083	Silent	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		14569083	44559900	27	13616										
TMEM143	0	genome.wustl.edu	37	chr19	48845963	48845963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	cgtgcgcaccttcagctccgGcagcagctgctccaggcctt	11	17	1	0			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	48845963	48845963	G	A	SNP	TMEM143	ENST00000293261	human	ensembl	69_37n	-1	known	missense	c.799	p.P267S	1.000	pfam_DUF3754	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558	55	0	0	21	18	46.15	-	-	-	A	48845963	G	A	48845963	3	1	219	1	0	0	0	0	1	0	0	0	16152	1203	42	4	592	4	TMEM143	19	48845963	Missense_Mutation	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	34276880	48845963	10283020	28	13617										
BIRC8	0	genome.wustl.edu	37	chr19	53793429	53793429	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	cttctcttctagcagatattTgcaacctggataccatttag	6	10	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	53793429	53793429	T	C	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	missense	c.199	p.K67E	0.068	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	164	0	0	130	18	12.16	-	-	-	C	53793429	T	C	53793429	3	2	219	1	0	0	0	0	1	0	0	0	1445	1821	63	5	515	5	BIRC8	19	53793429	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09	4947466	53793429	5335554	29	13618										
ZNF419	0	genome.wustl.edu	37	chr19	58005412	58005412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gaagttttttcgccacaactCcagtctttttaaacatcgaa	5	10	1	0			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	58005412	58005412	C	T	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	1	known	missense	c.1490	p.S497F	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	317	0	0	165	131	44.26	-	-	-	T	58005412	C	T	58005412	3	4	219	1	0	0	0	0	1	0	0	0	17992	855	30	2	1508	2	ZNF419	19	58005412	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	4211983	58005412	1123571	30	13619										
SLC13A3	0	genome.wustl.edu	37	chr20	45188713	45188713	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tgggtggcaatgctgtgacaTtgaccgagtacatatcagcc	12	9	1	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	45188713	45188713	T	C	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1757	p.N586S	0.261	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	183	0	0	104	56	34.78	-	-	-	C	45188713	T	C	45188713	3	2	219	1	0	0	0	0	1	0	0	0	14482	1493	52	5	55	5	SLC13A3	20	45188713	Missense_Mutation	SNP	T	TCGA-A8-A09K-01A-11W-A019-09		45188713	17836807	31	13620										
PMEPA1	0	genome.wustl.edu	37	chr20	56228121	56228121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gttgcctgacactgtgctctCcgagggccacaggcatcctt	11	14	1	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	56228121	56228121	C	G	SNP	PMEPA1	ENST00000341744	human	ensembl	69_37n	-1	known	missense	c.286	p.E96Q	0.997	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225	8	0	0	7	5	41.67	-	-	-	G	56228121	C	G	56228121	3	3	219	1	0	0	0	0	1	0	0	0	12206	864	30	2	585	2	PMEPA1	20	56228121	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09	11039408	56228121	6797399	32	13621										
PDE9A	0	genome.wustl.edu	37	chr21	44119099	44119099	+	Frame_Shift_Del	DEL	T	T	-													0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	actccgtacaaagtgagaccTgtggccatcaagcaactctc							TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	21	44119099	44119099	T	-	DEL	PDE9A	ENST00000291539	human	ensembl	69_37n	1	known	frame_shift_del	c.240	p.V81fs	0.086	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	78	0	0	39	29	40.28	-	-	-	-	44119099	T	-	44119099	7	5	219	1	0	1	0	1	0	0	0	0	11728	1580	55	0	334	0	PDE9A	21	44119099	Frame_Shift_Del	DEL	T	TCGA-A8-A09K-01A-11W-A019-09		44119099	4010796	33	13622										
NXT2	0	genome.wustl.edu	37	chrX	108785738	108785738	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	tttttaatgtggatgaagagCaagcaactcagtcccaaact	8	8	1	2			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	108785738	108785738	C	G	SNP	NXT2	ENST00000218004	human	ensembl	69_37n	1	known	missense	c.415	p.Q139E	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT2	HGNC	ENSG00000101888	249	0	0	213	112	34.25	-	-	-	G	108785738	C	G	108785738	3	3	219	1	0	0	0	0	1	0	0	0	10868	711	25	4	433	4	NXT2	23	108785738	Missense_Mutation	SNP	C	TCGA-A8-A09K-01A-11W-A019-09		108785738	46484822	34	13623										
SPANXN3	0	genome.wustl.edu	37	chrX	142596806	142596806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.828805203053759	1.1775	0	1.57	0.1	0.5224358974359	0	gatccttcagataagtctacGccttcgtcctcctccttttg	6	14	2	1			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	142596806	142596806	G	A	SNP	SPANXN3	ENST00000370503	human	ensembl	69_37n	-1	known	silent	c.264	p.G88	0.002	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN3	HGNC	ENSG00000189252	2755	2	0.07	2420	1853	43.19	-	-	-	A	142596806	G	A	142596806	2	1	219	1	0	0	0	0	0	0	0	1	15083	1074	38	1		1	SPANXN3	23	142596806	Silent	SNP	G	TCGA-A8-A09K-01A-11W-A019-09	33811068	142596806	12673754	35	13624										
TRIM63	0	genome.wustl.edu	37	chr1	26386771	26386771	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gctcaccttggtcactcgacGggaatcctccagctgagtga	11	13	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	26386771	26386771	G	C	SNP	TRIM63	ENST00000374272	human	ensembl	69_37n	-1	known	missense	c.583	p.R195G	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM63	HGNC	ENSG00000158022	59	0	0	35	6	14.63	-	-	-	C	26386771	G	C	26386771	3	2	220	1	0	0	0	0	1	0	0	0	16634	1116	39	3	502	3	TRIM63	1	26386771	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		26386771	222863850	1	13625										
GRIK3	0	genome.wustl.edu	37	chr1	37270667	37270667	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cagagaggaccagcccggcgGccaggacaatgaagatgccc	14	13	0	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	37270667	37270667	G	C	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	missense	c.2486	p.A829G	1.000	pfam_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	100	0	0	53	32	37.65	-	-	-	C	37270667	G	C	37270667	3	2	220	1	0	0	0	0	1	0	0	0	6826	1203	42	4	281	4	GRIK3	1	37270667	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	10883896	37270667	211979954	2	13626										
LRRC42	0	genome.wustl.edu	37	chr1	54423919	54423919	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agcttggagatgagcatgaaCttctagaacatctcaccaat	8	9	2	4			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	54423919	54423919	C	G	SNP	LRRC42	ENST00000319223	human	ensembl	69_37n	1	known	missense	c.571	p.L191V	0.995	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212	134	0	0	91	18	16.51	-	-	-	G	54423919	C	G	54423919	3	3	220	1	0	0	0	0	1	0	0	0	9066	565	20	4	577	4	LRRC42	1	54423919	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	17153252	54423919	194826702	3	13627										
WLS	0	genome.wustl.edu	37	chr1	68564426	68564426	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tcttccctcgatttacatggGagttgcattcctggaaaatt	8	9	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	68564426	68564426	G	A	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	silent	c.1527	p.L509	0.001	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	177	0	0	177	33	15.71	-	-	-	A	68564426	G	A	68564426	2	1	220	1	0	0	0	0	0	0	0	1	17473	1161	41	2		2	WLS	1	68564426	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	14140507	68564426	180686195	4	13628										
C1orf173	0	genome.wustl.edu	37	chr1	75037981	75037981	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctagaagccctggattgtcaGacaactcagaagcctccaca	8	13	2	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	75037981	75037981	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.3413	p.S1138F	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	507	0	0	363	231	38.89	-	-	-	A	75037981	G	A	75037981	3	1	220	1	0	0	0	0	1	0	0	0	2033	942	33	2	1183	2	C1orf173	1	75037981	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	6473555	75037981	174212640	5	13629										
TTF2	0	genome.wustl.edu	37	chr1	117617614	117617614	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gacaagaatcaagaaccagcTctctggaaacagctcatcaa	7	11	4	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	117617614	117617614	T	A	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	silent	c.408	p.A136	0.012	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	301	0	0	369	60	13.95	-	-	-	A	117617614	T	A	117617614	2	1	220	1	0	0	0	0	0	0	0	1	16816	1538	54	5		5	TTF2	1	117617614	Silent	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	42579633	117617614	131633007	6	13630										
TXNIP	0	genome.wustl.edu	37	chr1	145438841	145438841	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atcaagtcttttgaggtggtCtttaacgaccctgaaaaggt	10	7	3	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	145438841	145438841	C	A	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	1	known	silent	c.39	p.V13	1.000	pfam_Arrestin-like_N	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	120	0	0	69	47	40.52	-	-	-	A	145438841	C	A	145438841	2	1	220	1	0	0	0	0	0	0	0	1	16900	900	32	2		2	TXNIP	1	145438841	Silent	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	27821227	145438841	103811780	7	13631										
KIAA0907	0	genome.wustl.edu	37	chr1	155893455	155893455	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cacaaagcttcttggcagcaGccaggccttctggtttgggg	13	11	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	155893455	155893455	G	C	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	missense	c.917	p.A306G	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	120	0	0	114	48	29.63	-	-	-	C	155893455	G	C	155893455	3	2	220	1	0	0	0	0	1	0	0	0	8251	971	34	4	955	4	KIAA0907	1	155893455	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	10454614	155893455	93357166	8	13632										
CACNA1E	0	genome.wustl.edu	37	chr1	181480573	181480573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ggatcaaaattgtggccctgGggttcatcttccataagggc	12	9	3	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	181480573	181480573	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.439	p.G147W	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	364	0	0	644	78	10.8	-	-	-	T	181480573	G	T	181480573	3	4	220	1	0	0	0	0	1	0	0	0	2567	1232	43	4	449	4	CACNA1E	1	181480573	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	25587118	181480573	67770048	9	13633										
PIK3C2B	0	genome.wustl.edu	37	chr1	204393999	204393999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctcacaaggtgccatgacttCgagatcccagggcgaaccag	11	13	1	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	204393999	204393999	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.4886	p.R1629Q	0.993	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	33	0	0	63	9	12.5	-	-	-	T	204393999	C	T	204393999	3	4	220	1	0	0	0	0	1	0	0	0	11984	884	31	1	22	1	PIK3C2B	1	204393999	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	22913426	204393999	44856622	10	13634										
NFASC	0	genome.wustl.edu	37	chr1	204921156	204921156	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cagtgacgcagccgccaaccAtcaccaagcagtcagcgaag	10	15	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	204921156	204921156	A	C	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.127	p.I43L	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	68	0	0	52	13	20	-	-	-	C	204921156	A	C	204921156	3	2	220	1	0	0	0	0	1	0	0	0	10431	217	8	5	137	5	NFASC	1	204921156	Missense_Mutation	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	527157	204921156	44329465	11	13635										
CTSE	0	genome.wustl.edu	37	chr1	206325403	206325403	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	acatgatggctcagaacctgGtggacttgccgatgttttct	11	9	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	206325403	206325403	G	C	SNP	CTSE	ENST00000361052	human	ensembl	69_37n	1	known	missense	c.643	p.V215L	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSE	HGNC	ENSG00000196188	128	0	0	167	25	13.02	-	-	-	C	206325403	G	C	206325403	3	2	220	1	0	0	0	0	1	0	0	0	4065	1261	44	4	646	4	CTSE	1	206325403	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	1404247	206325403	42925218	12	13636										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209954787	209954787	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agaagagctgaaccagagccAgcagctgcctcccagagtaa	11	12	0	5			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	209954787	209954787	A	C	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	missense	c.1547	p.Q516P	0.993	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	295	1	0.34	239	77	24.21	-	-	-	C	209954787	A	C	209954787	3	2	220	1	0	0	0	0	1	0	0	0	16538	188	7	5	1601	5	TRAF3IP3	1	209954787	Missense_Mutation	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	3629384	209954787	39295834	13	13637										
RYR2	0	genome.wustl.edu	37	chr1	237890431	237890431	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aaggctgtatggcataaactActgtccaagcagaggaaaag	11	7	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	1	237890431	237890431	A	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.10764	p.L3588	0.942	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	265	0	0	256	40	13.51	-	-	-	G	237890431	A	G	237890431	2	3	220	1	0	0	0	0	0	0	0	1	13855	378	14	5		5	RYR2	1	237890431	Silent	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	27935644	237890431	11360190	14	13638										
EPT1	0	genome.wustl.edu	37	chr2	26607960	26607960	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cagatattttagagctacatCctagagtattctactttatg	6	7	1	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	26607960	26607960	C	G	SNP	EPT1	ENST00000447170	human	ensembl	69_37n	1	novel	missense	c.493	p.P165A	1.000	NULL	NULL	-	no_stop_codon	EPT1	HGNC	ENSG00000138018	67	0	0	96	26	21.31	-	-	-	G	26607960	C	G	26607960	3	3	220	1	0	0	0	0	1	0	0	0	5236	855	30	2	895	2	EPT1	2	26607960	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		26607960	216591413	15	13639										
CCDC104	0	genome.wustl.edu	37	chr2	55746978	55746978	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cgaggtggagtgggtagtggAgagcatcgcggggttcctgc	20	7	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	55746978	55746978	A	G	SNP	CCDC104	ENST00000339012	human	ensembl	69_37n	1	known	missense	c.41	p.E14G	1.000	pfam_ARF-like_2-bdp_dom	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001	28	0	0	20	6	23.08	-	-	-	G	55746978	A	G	55746978	3	3	220	1	0	0	0	0	1	0	0	0	2764	304	11	5	43	5	CCDC104	2	55746978	Missense_Mutation	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	29139018	55746978	187452395	16	13640										
SMEK2	0	genome.wustl.edu	37	chr2	55808732	55808732	+	Frame_Shift_Del	DEL	C	C	-													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agccagcatgttctctggatCaattagagtacgaagaagtc							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	55808732	55808732	C	-	DEL	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	frame_shift_del	c.1336	p.D446fs	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	279	0	0	225	35	13.26	-	-	-	-	55808732	C	-	55808732	7	5	220	1	0	1	0	1	0	0	0	0	14883	826	29	0	1253	0	SMEK2	2	55808732	Frame_Shift_Del	DEL	C	TCGA-A8-A09M-01A-11W-A019-09	61754	55808732	187390641	17	13641										
RGPD3	0	genome.wustl.edu	37	chr2	107041153	107041153	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cttactttgccattgacctcGtttttgagaatttttaagtt	6	7	0	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	107041153	107041153	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.3270	p.N1090	0.929	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	1286	0	0	1164	220	15.85	-	-	-	A	107041153	G	A	107041153	2	1	220	1	0	0	0	0	0	0	0	1	13370	1136	40	1		1	RGPD3	2	107041153	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	51232421	107041153	136158220	18	13642										
LY75	0	genome.wustl.edu	37	chr2	160750486	160750486	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tttaaggtggtggcacaccaTggcccactatgatcttcatc	9	11	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	160750486	160750486	T	A	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	silent	c.576	p.P192	0.963	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	137	0	0	116	28	19.44	-	-	-	A	160750486	T	A	160750486	2	1	220	1	0	0	0	0	0	0	0	1	9166	1451	51	5		5	LY75	2	160750486	Silent	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	53709333	160750486	82448887	19	13643										
TRIP12	0	genome.wustl.edu	37	chr2	230656625	230656625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aataccagctctgcctagagGattgctctcatcatctgtgg	9	11	4	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	2	230656625	230656625	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.4147	p.P1383S	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	395	0	0	264	73	21.66	-	-	-	A	230656625	G	A	230656625	3	1	220	1	0	0	0	0	1	0	0	0	16652	1174	41	2	1887	2	TRIP12	2	230656625	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	69906139	230656625	12542748	20	13644										
ANKRD28	0	genome.wustl.edu	37	chr3	15765918	15765918	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aagatctagaaggtacttgaCtacgctgatcattccactag	8	9	2	4			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	3	15765918	15765918	C	G	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.763	p.V255L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	48	0	0	30	7	18.92	-	-	-	G	15765918	C	G	15765918	3	3	220	1	0	0	0	0	1	0	0	0	656	565	20	4	2585	4	ANKRD28	3	15765918	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		15765918	182256512	21	13645										
NKTR	0	genome.wustl.edu	37	chr3	42679861	42679861	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gtagtaaatgggactctgagTcaaattcagaacgagatgtc	11	6	3	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	3	42679861	42679861	T	A	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.2665	p.S889T	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	182	0	0	65	128	66.32	-	-	-	A	42679861	T	A	42679861	3	1	220	1	0	0	0	0	1	0	0	0	10520	1667	58	5	2711	5	NKTR	3	42679861	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	26913943	42679861	155342569	22	13646										
SLC35A5	0	genome.wustl.edu	37	chr3	112300106	112300106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgccagcaagcctcaagttcCggaatacgcacctaggcaag	10	13	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	3	112300106	112300106	C	T	SNP	SLC35A5	ENST00000492406	human	ensembl	69_37n	1	known	missense	c.1142	p.P381L	0.118	pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_DUF250,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A5	HGNC	ENSG00000138459	165	0	0	183	28	13.27	-	-	-	T	112300106	C	T	112300106	3	4	220	1	0	0	0	0	1	0	0	0	14663	652	23	1	1160	1	SLC35A5	3	112300106	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	69620245	112300106	85722324	23	13647										
EPHB1	0	genome.wustl.edu	37	chr3	134670326	134670326	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctcaccaccttcatcaaccgGcggggggcccatcgcatcta	9	17	4	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	3	134670326	134670326	G	C	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.237	p.R79	0.954	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	144	0	0	111	47	29.75	-	-	-	C	134670326	G	C	134670326	2	2	220	1	0	0	0	0	0	0	0	1	5211	1190	42	4		4	EPHB1	3	134670326	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	22370220	134670326	63352104	24	13648										
RBM47	0	genome.wustl.edu	37	chr4	40440303	40440304	+	Frame_Shift_Del	DEL	CT	CT	-													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ccatggcagccgcgcggtggCtctcgtactccacgaaggcg							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	40440303	40440304	CT	-	DEL	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	frame_shift_del	c.608_607	p.S203fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	34	0	0	15	8	34.78	-	-	-	-	40440304	CT	-	40440303	7	5	220	1	0	1	0	1	0	0	0	0	13224	797	28	0	1189	0	RBM47	4	40440303	Frame_Shift_Del	DEL	CT	TCGA-A8-A09M-01A-11W-A019-09		40440303	150713973	25	13649										
C4orf22	0	genome.wustl.edu	37	chr4	81884720	81884720	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cactatcctgacagaactctAcgtacaagctgtcatttttg	6	11	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	81884720	81884720	A	G	SNP	C4orf22	ENST00000508675	human	ensembl	69_37n	1	known	missense	c.707	p.Y236C	1.000	NULL	NULL	-	no_errors	C4orf22	HGNC	ENSG00000197826	207	0	0	181	41	18.47	-	-	-	G	81884720	A	G	81884720	3	3	220	1	0	0	0	0	1	0	0	0	2276	391	14	5	678	5	C4orf22	4	81884720	Missense_Mutation	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	41444417	81884720	109269556	26	13650										
IL15	0	genome.wustl.edu	37	chr4	142651125	142651125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atcctagcaaacaacagtttGtcttctaatggggtgagttt	9	7	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	142651125	142651125	G	T	SNP	IL15	ENST00000296545	human	ensembl	69_37n	1	known	missense	c.366	p.L122F	0.091	pfam_Interleukin_15-like	pfam_Interleukin_15-like,prints_Interleukin-15_mammal,prints_Interleukin-15	-	no_errors	IL15	HGNC	ENSG00000164136	238	0	0	97	67	40.85	-	-	-	T	142651125	G	T	142651125	3	4	220	1	0	0	0	0	1	0	0	0	7685	1368	48	4	384	4	IL15	4	142651125	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	60766405	142651125	48503151	27	13651										
FBXW7	0	genome.wustl.edu	37	chr4	153253831	153253831	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atgtctgagctgcttgtagcAggtctttgggttccaggaat	13	7	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	153253831	153253831	A	G	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.902	p.L301P	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	224	0	0	224	74	24.83	-	-	-	G	153253831	A	G	153253831	3	3	220	1	0	0	0	0	1	0	0	0	5815	188	7	5	1249	5	FBXW7	4	153253831	Missense_Mutation	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	10602706	153253831	37900445	28	13652										
FNIP2	0	genome.wustl.edu	37	chr4	159756601	159756601	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	caagcagaggacagaatgaaGacagggacagtggcattgct	14	7	0	4			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	159756601	159756601	G	C	SNP	FNIP2	ENST00000379346	human	ensembl	69_37n	1	known	missense	c.769	p.D257H	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795	476	0	0	353	76	17.67	-	-	-	C	159756601	G	C	159756601	3	2	220	1	0	0	0	0	1	0	0	0	6022	942	33	2	726	2	FNIP2	4	159756601	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	6502770	159756601	31397675	29	13653										
WWC2	0	genome.wustl.edu	37	chr4	184204028	184204028	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	caactgtgccaaagacctcaGaagtcagccacctactagaa	7	13	2	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	4	184204028	184204028	G	A	SNP	WWC2	ENST00000448232	human	ensembl	69_37n	1	known	missense	c.2924	p.R975K	0.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC2	HGNC	ENSG00000151718	50	0	0	45	5	10	-	-	-	A	184204028	G	A	184204028	3	1	220	1	0	0	0	0	1	0	0	0	17509	942	33	2	2922	2	WWC2	4	184204028	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	24447427	184204028	6950248	30	13654										
NPR3	0	genome.wustl.edu	37	chr5	32780845	32780847	+	In_Frame_Del	DEL	TCC	TCC	-													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	taggtatcgccgggcaggtgTccatagatgccaacggagac							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	32780845	32780847	TCC	-	DEL	NPR3	ENST00000265074	human	ensembl	69_37n	1	known	in_frame_del	c.1213_1215	p.S405in_frame_del	1.000:1.000:1.000	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389	127	0	0	64	29	30.53	-	-	-	-	32780847	TCC	-	32780845	7	5	220	1	0	1	0	1	0	0	0	0	10669	1667	58	0	1231	0	NPR3	5	32780845	In_Frame_Del	DEL	TCC	TCGA-A8-A09M-01A-11W-A019-09		32780845	148134415	31	13655										
MAP3K1	0	genome.wustl.edu	37	chr5	56152573	56152574	+	Frame_Shift_Ins	INS	-	-	T													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aggagaaataggcgagggccINStgtggtaagtggctatgggt							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	56152573	56152574	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.629_630	p.V211fs	1.000:0.725	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	139	0	0	102	73	41.71	-	-	-	T	56152574	-	T	56152573	7	5	220	1	0	1	1	0	0	0	0	0	9314	681	24	0	635	0	MAP3K1	5	56152573	Frame_Shift_Ins	INS	-	TCGA-A8-A09M-01A-11W-A019-09	23371728	56152573	124762687	32	13656										
PCDHA8	0	genome.wustl.edu	37	chr5	140223040	140223040	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gcgcggtatccagcctgctgGtgctcacgctgctgctgtac	13	14	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	140223040	140223040	G	C	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.2134	p.V712L	0.984	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	61	0	0	40	5	11.11	-	-	-	C	140223040	G	C	140223040	3	2	220	1	0	0	0	0	1	0	0	0	11603	1261	44	4	2136	4	PCDHA8	5	140223040	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	84070467	140223040	40692220	33	13657										
PCDHGA8	0	genome.wustl.edu	37	chr5	140774003	140774003	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agcgacagcggggacccgccCctcagcagcaacatgtcact	11	16	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	140774003	140774003	C	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	69_37n	1	known	silent	c.1623	p.P541	0.771	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	81	0	0	55	9	14.06	-	-	-	A	140774003	C	A	140774003	2	1	220	1	0	0	0	0	0	0	0	1	11633	610	22	4		4	PCDHGA8	5	140774003	Silent	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	550963	140774003	40141257	34	13658										
PCDH12	0	genome.wustl.edu	37	chr5	141335925	141335925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aactggggagtcctggatgcGgtatgagacttttccattaa	12	7	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	141335925	141335925	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.1492	p.R498C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	141	0	0	158	35	18.13	-	-	-	A	141335925	G	A	141335925	3	1	220	1	0	0	0	0	1	0	0	0	11583	1116	39	1	2078	1	PCDH12	5	141335925	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	561922	141335925	39579335	35	13659										
PANK3	0	genome.wustl.edu	37	chr5	167984618	167984618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agaagtgcaccaactgctccAaagtaaccctgtgtaattta	7	10	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	167984618	167984618	A	G	SNP	PANK3	ENST00000239231	human	ensembl	69_37n	-1	known	silent	c.1071	p.F357	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK3	HGNC	ENSG00000120137	186	0	0	172	123	41.41	-	-	-	G	167984618	A	G	167984618	2	3	220	1	0	0	0	0	0	0	0	1	11491	127	5	5		5	PANK3	5	167984618	Silent	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	26648693	167984618	12930642	36	13660										
RMND5B	0	genome.wustl.edu	37	chr5	177573261	177573261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ccctgctggggctttctgtgGagtccccccttagcgtcagg	13	14	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	5	177573261	177573261	G	A	SNP	RMND5B	ENST00000313386	human	ensembl	69_37n	1	known	missense	c.841	p.E281K	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5B	HGNC	ENSG00000145916	16	0	0	13	6	31.58	-	-	-	A	177573261	G	A	177573261	3	1	220	1	0	0	0	0	1	0	0	0	13484	1175	41	2	863	2	RMND5B	5	177573261	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	9588643	177573261	3341999	37	13661										
SLC17A2	0	genome.wustl.edu	37	chr6	25921430	25921430	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ggccatgccctggactgtccGaaccatgatgaccaaaatca	9	13	1	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	25921430	25921430	G	T	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	silent	c.451	p.R151	0.691	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	195	0	0	232	40	14.71	-	-	-	T	25921430	G	T	25921430	2	4	220	1	0	0	0	0	0	0	0	1	14506	1057	37	3		3	SLC17A2	6	25921430	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		25921430	145193637	38	13662										
SLC17A2	0	genome.wustl.edu	37	chr6	25921485	25921485	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gccagtggtgtaaagagggtGagaagggaagagatcagcaa	17	4	1	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	25921485	25921485	G	A	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	silent	c.396	p.L132	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	212	0	0	217	45	17.18	-	-	-	A	25921485	G	A	25921485	2	1	220	1	0	0	0	0	0	0	0	1	14506	1277	45	2		2	SLC17A2	6	25921485	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	55	25921485	145193582	39	13663										
ZNF193	0	genome.wustl.edu	37	chr6	28195034	28195034	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tccgaaggcactttcgacagCtgtgctaccaagagacccct	9	14	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	28195034	28195034	C	A	SNP	ZNF193	ENST00000252207	human	ensembl	69_37n	1	known	missense	c.172	p.L58M	0.114	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF193	HGNC	ENSG00000137185	157	0	0	117	25	17.61	-	-	-	A	28195034	C	A	28195034	3	1	220	1	0	0	0	0	1	0	0	0	17853	796	28	4	174	4	ZNF193	6	28195034	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	2273549	28195034	142920033	40	13664										
PEX6	0	genome.wustl.edu	37	chr6	42932585	42932585	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgtcatagcatcagagcagaGagagtagaggtccgcgcccg	14	10	2	4			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	42932585	42932585	G	C	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.2749	p.L917V	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	103	0	0	58	17	22.67	-	-	-	C	42932585	G	C	42932585	3	2	220	1	0	0	0	0	1	0	0	0	11824	942	33	2	201	2	PEX6	6	42932585	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	14737551	42932585	128182482	41	13665										
TRAM2	0	genome.wustl.edu	37	chr6	52370468	52370468	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tccatgcgagccagtccaaaGccaatggccagcacggcaag	11	14	0	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	52370468	52370468	G	A	SNP	TRAM2	ENST00000182527	human	ensembl	69_37n	-1	known	silent	c.804	p.G268	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308	132	0	0	89	46	34.07	-	-	-	A	52370468	G	A	52370468	2	1	220	1	0	0	0	0	0	0	0	1	16549	958	34	4		4	TRAM2	6	52370468	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	9437883	52370468	118744599	42	13666										
KIAA1009	0	genome.wustl.edu	37	chr6	84834930	84834930	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cgattctttaactgtgccagTcttttccatttttcaacttc	4	11	3	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	84834930	84834930	T	A	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.4071	p.R1357S	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	288	0	0	177	79	30.86	-	-	-	A	84834930	T	A	84834930	3	1	220	1	0	0	0	0	1	0	0	0	8255	1664	58	5	144	5	KIAA1009	6	84834930	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	32464462	84834930	86280137	43	13667										
EPB41L2	0	genome.wustl.edu	37	chr6	131184807	131184807	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atcaatatctccatctcctgTgatcacaatgcgtttctcaa	4	12	5	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	131184807	131184807	T	G	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.2881	p.T961P	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	205	0	0	151	21	12.21	-	-	-	G	131184807	T	G	131184807	3	3	220	1	0	0	0	0	1	0	0	0	5190	1696	59	5	144	5	EPB41L2	6	131184807	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	46349877	131184807	39930260	44	13668										
NOX3	0	genome.wustl.edu	37	chr6	155775952	155775952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ttttagtacttacaatacttGttcctcttatgaatgaaata	4	6	1	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	6	155775952	155775952	G	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	missense	c.248	p.T83K	0.767	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	170	0	0	191	31	13.96	-	-	-	T	155775952	G	T	155775952	3	4	220	1	0	0	0	0	1	0	0	0	10629	1377	48	4	1502	4	NOX3	6	155775952	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	24591145	155775952	15339115	45	13669										
BMPER	0	genome.wustl.edu	37	chr7	34091485	34091485	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctctctaggtcagaggaaagTgtttgacctcccttttggga	11	9	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	7	34091485	34091485	T	C	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	missense	c.689	p.V230A	1.000	NULL	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	163	0	0	98	23	19.01	-	-	-	C	34091485	T	C	34091485	3	2	220	1	0	0	0	0	1	0	0	0	1473	1696	59	5	719	5	BMPER	7	34091485	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09		34091485	125047178	46	13670										
ABCA13	0	genome.wustl.edu	37	chr7	48311643	48311643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ccactgatgctcagaaactcTtggaatttggcaacgaagtg	10	9	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	7	48311643	48311643	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.2380	p.L794	0.123	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	143	0	0	130	28	17.72	-	-	-	C	48311643	T	C	48311643	2	2	220	1	0	0	0	0	0	0	0	1	31	1606	56	5		5	ABCA13	7	48311643	Silent	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	14220158	48311643	110827020	47	13671										
MUC17	0	genome.wustl.edu	37	chr7	100681618	100681618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	acaactcctgttgactccaaCactcctttcactacttctac	2	16	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	7	100681618	100681618	C	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6921	p.N2307K	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	307	0	0	249	160	39.12	-	-	-	A	100681618	C	A	100681618	3	1	220	1	0	0	0	0	1	0	0	0	10046	477	17	4	6931	4	MUC17	7	100681618	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	52369975	100681618	58457045	48	13672										
SLC13A1	0	genome.wustl.edu	37	chr7	122759261	122759261	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ggtaatgaacccagaggagaTaatttatttcctatccactt	7	8	0	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	7	122759261	122759261	T	A	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.1386	p.L462F	0.993	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	175	0	0	130	93	41.7	-	-	-	A	122759261	T	A	122759261	3	1	220	1	0	0	0	0	1	0	0	0	14480	1403	49	5	413	5	SLC13A1	7	122759261	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	22077643	122759261	36379402	49	13673										
WHSC1L1	0	genome.wustl.edu	37	chr8	38172281	38172281	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gaatcagagagtcaccagagCtttcacaaatctgtaatatg	8	8	4	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	8	38172281	38172281	C	G	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	missense	c.2126	p.S709T	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	89	0	0	117	22	15.83	-	-	-	G	38172281	C	G	38172281	3	3	220	1	0	0	0	0	1	0	0	0	17460	797	28	4	2239	4	WHSC1L1	8	38172281	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		38172281	108191741	50	13674										
EFR3A	0	genome.wustl.edu	37	chr8	132980672	132980672	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgccattgctgctaaaggttCcataggtgagtgccaataaa	10	8	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	8	132980672	132980672	C	A	SNP	EFR3A	ENST00000254624	human	ensembl	69_37n	1	known	missense	c.986	p.S329Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294	108	0	0	177	49	21.68	-	-	-	A	132980672	C	A	132980672	3	1	220	1	0	0	0	0	1	0	0	0	4993	855	30	2	1020	2	EFR3A	8	132980672	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	94808391	132980672	13383350	51	13675										
EHMT1	0	genome.wustl.edu	37	chr9	140637847	140637847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cttgccttttgttttagcagCtgcagtatctcggaagaaaa	9	8	1	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	9	140637847	140637847	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.848	p.A283V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	37	0	0	51	16	23.88	-	-	-	T	140637847	C	T	140637847	3	4	220	1	0	0	0	0	1	0	0	0	5018	797	28	4	866	4	EHMT1	9	140637847	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		140637847	575584	52	13676										
C10orf68	0	genome.wustl.edu	37	chr10	33165292	33165292	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aagtgttacatgctgctgccCgaaaatctgtaccacaccca	7	13	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	10	33165292	33165292	C	T	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	nonsense	c.2050	p.R684*	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	130	0	0	171	25	12.76	-	-	-	T	33165292	C	T	33165292	4	4	220	1	0	0	0	0	0	1	0	0	1623	644	23	1	1936	1	C10orf68	10	33165292	Nonsense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		33165292	102369455	53	13677										
VCL	0	genome.wustl.edu	37	chr10	75860849	75860849	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aagacggcccgagaactcacAccccaggttgggttttgctc	11	13	1	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	10	75860849	75860849	A	C	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	silent	c.2016	p.T672	0.542	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	47	0	0	31	39	55.71	-	-	-	C	75860849	A	C	75860849	2	2	220	1	0	0	0	0	0	0	0	1	17236	146	6	5		5	VCL	10	75860849	Silent	SNP	A	TCGA-A8-A09M-01A-11W-A019-09	42695557	75860849	59673898	54	13678										
TACC2	0	genome.wustl.edu	37	chr10	123985898	123985898	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	cagcaggacgacgatgccccGaagaagcaggccttgtacct	12	13	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	10	123985898	123985898	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.7626	p.P2542	0.999	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	55	0	0	60	11	15.49	-	-	-	A	123985898	G	A	123985898	2	1	220	1	0	0	0	0	0	0	0	1	15594	1045	37	1		1	TACC2	10	123985898	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	48125049	123985898	11548849	55	13679										
PAX6	0	genome.wustl.edu	37	chr11	31816281	31816281	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gcctcatctgaatcttctccGttggaactgatggagttggt	11	9	4	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	11	31816281	31816281	G	A	SNP	PAX6	ENST00000379107	human	ensembl	69_37n	-1	known	silent	c.621	p.N207	0.104	superfamily_Homeodomain-like	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	95	0	0	62	29	31.87	-	-	-	A	31816281	G	A	31816281	2	1	220	1	0	0	0	0	0	0	0	1	11556	1136	40	1		1	PAX6	11	31816281	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		31816281	103190235	56	13680										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57075876	57075876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctccgttcattaccttgctcCgaagctgagggcttctcctg	9	14	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	11	57075876	57075876	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.4309	p.G1437R	0.963	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	795	0	0	362	192	34.66	-	-	-	T	57075876	C	T	57075876	3	4	220	1	0	0	0	0	1	0	0	0	16415	661	23	1	904	1	TNKS1BP1	11	57075876	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	25259595	57075876	77930640	57	13681										
HEPHL1	0	genome.wustl.edu	37	chr11	93844724	93844724	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	caacaggattccttactccaCcacatctcctggagtggcat	7	14	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	11	93844724	93844724	C	A	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	missense	c.3230	p.T1077N	0.992	NULL	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	101	0	0	55	26	32.1	-	-	-	A	93844724	C	A	93844724	3	1	220	1	0	0	0	0	1	0	0	0	7106	507	18	4	3304	4	HEPHL1	11	93844724	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	36768848	93844724	41161792	58	13682										
DYNC2H1	0	genome.wustl.edu	37	chr11	103027330	103027330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aggattctccttattataaaGgatttgaagataaagtatca	7	4	2	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	11	103027330	103027330	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.3958	p.G1320R	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	260	0	0	154	50	24.51	-	-	-	A	103027330	G	A	103027330	3	1	220	1	0	0	0	0	1	0	0	0	4881	1001	35	4	4060	4	DYNC2H1	11	103027330	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	9182606	103027330	31979186	59	13683										
TAS2R13	0	genome.wustl.edu	37	chr12	11061556	11061556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tagagaaaagcagggctagaGaaactcgctattttgagcaa	11	6	0	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	12	11061556	11061556	G	C	SNP	TAS2R13	ENST00000390677	human	ensembl	69_37n	-1	known	missense	c.342	p.F114L	0.011	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R13	HGNC	ENSG00000212128	201	0	0	266	59	18.15	-	-	-	C	11061556	G	C	11061556	3	2	220	1	0	0	0	0	1	0	0	0	15659	933	33	2	573	2	TAS2R13	12	11061556	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		11061556	122790339	60	13684										
FLT3	0	genome.wustl.edu	37	chr13	28622415	28622415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gtcctttgtggtctcacctgTatccgttatcaagacccttt	7	12	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	13	28622415	28622415	T	C	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	missense	c.1202	p.Y401C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	410	1	0.24	437	53	10.82	-	-	-	C	28622415	T	C	28622415	3	2	220	1	0	0	0	0	1	0	0	0	5988	1638	57	5	1843	5	FLT3	13	28622415	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09		28622415	86547463	61	13685										
HMGB1	0	genome.wustl.edu	37	chr13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	acttattcatcatcatcatcTtcttcttcatcttcatcttc	0	13	11	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	13	31035512	31035512	T	A	SNP	HMGB1	ENST00000339872	human	ensembl	69_37n	-1	known	missense	c.630	p.E210D	0.995	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB1	HGNC	ENSG00000189403	116	1	0.85	75	15	16.48	-	-	-	A	31035512	T	A	31035512	3	1	220	1	0	0	0	0	1	0	0	0	7276	1606	56	5	21	5	HMGB1	13	31035512	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	2413097	31035512	84134366	62	13686										
FSCB	0	genome.wustl.edu	37	chr14	44975063	44975063	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tcaccaagaagctctactgaAggagacttttcagctggtgg	11	9	3	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	14	44975063	44975063	A	G	SNP	FSCB	ENST00000340446	human	ensembl	69_37n	-1	known	silent	c.1128	p.P376	0.000	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	319	1	0.31	244	57	18.94	-	-	-	G	44975063	A	G	44975063	2	3	220	1	0	0	0	0	0	0	0	1	6115	59	3	5		5	FSCB	14	44975063	Silent	SNP	A	TCGA-A8-A09M-01A-11W-A019-09		44975063	62374477	63	13687										
SYNE2	0	genome.wustl.edu	37	chr14	64681163	64681164	+	In_Frame_Ins	INS	-	-	TAT													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctcacgaagaggacgaggagINSggcccatactacagcgcact							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	14	64681163	64681164	-	TAT	INS	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	in_frame_ins	c.19308_19309	p.6436in_frame_insY	0.966:0.974	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	63	0	0	27	9	25	-	-	-	TAT	64681164	-	TAT	64681163	7	5	220	1	0	1	1	0	0	0	0	0	15538	991	35	0	19726	0	SYNE2	14	64681163	In_Frame_Ins	INS	-	TCGA-A8-A09M-01A-11W-A019-09	19706100	64681163	42668377	64	13688										
MAP3K9	0	genome.wustl.edu	37	chr14	71197537	71197537	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	attggggtcagggagacgggGgaattcacctgggtctcggc	18	8	3	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	14	71197537	71197537	G	C	SNP	MAP3K9	ENST00000555993	human	ensembl	69_37n	-1	known	missense	c.2917	p.P973A	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	25	0	0	3	7	70	-	-	-	C	71197537	G	C	71197537	3	2	220	1	0	0	0	0	1	0	0	0	9328	1232	43	4	443	4	MAP3K9	14	71197537	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	6516374	71197537	36152003	65	13689										
VSX2	0	genome.wustl.edu	37	chr14	74726397	74726397	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gagtatgggctctacggggcCatggtgcggcactccatccc	14	13	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	14	74726397	74726397	C	T	SNP	VSX2	ENST00000261980	human	ensembl	69_37n	1	known	silent	c.672	p.A224	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	VSX2	HGNC	ENSG00000119614	48	0	0	18	6	25	-	-	-	T	74726397	C	T	74726397	2	4	220	1	0	0	0	0	0	0	0	1	17329	581	21	4		4	VSX2	14	74726397	Silent	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	3528860	74726397	32623143	66	13690										
OTUD7A	0	genome.wustl.edu	37	chr15	31851321	31851321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gctcgttgttgcattcacttGccacgtgggaccgggccagg	14	12	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	15	31851321	31851321	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.401	p.A134V	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	35	0	0	32	8	20	-	-	-	A	31851321	G	A	31851321	3	1	220	1	0	0	0	0	1	0	0	0	11391	1319	46	4	2415	4	OTUD7A	15	31851321	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		31851321	70680071	67	13691										
MYH11	0	genome.wustl.edu	37	chr16	15829383	15829383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gtctgagatgtggccctccaGctcccggatcttcttcaggg	12	13	4	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	16	15829383	15829383	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.3367	p.L1123M	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	76	0	0	155	18	10.4	-	-	-	T	15829383	G	T	15829383	3	4	220	1	0	0	0	0	1	0	0	0	10103	962	34	4	2671	4	MYH11	16	15829383	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		15829383	74525370	68	13692										
GP2	0	genome.wustl.edu	37	chr16	20335274	20335274	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgggcacaggcagtgtggttGgtgatgccatccccaagggc	16	10	0	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	16	20335274	20335274	G	C	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	silent	c.399	p.T133	0.850	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	93	0	0	73	15	17.05	-	-	-	C	20335274	G	C	20335274	2	2	220	1	0	0	0	0	0	0	0	1	6632	1335	47	4		4	GP2	16	20335274	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	4505891	20335274	70019479	69	13693										
ABCC12	0	genome.wustl.edu	37	chr16	48117854	48117854	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	taaccaggacgtgatcgcagTtgagaactgtgttgaggcgg	15	7	0	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	16	48117854	48117854	T	A	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.3959	p.N1320I	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	192	0	0	223	41	15.53	-	-	-	A	48117854	T	A	48117854	3	1	220	1	0	0	0	0	1	0	0	0	52	1725	60	5	128	5	ABCC12	16	48117854	Missense_Mutation	SNP	T	TCGA-A8-A09M-01A-11W-A019-09	27782580	48117854	42236899	70	13694										
TTC25	0	genome.wustl.edu	37	chr17	40095238	40095238	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgctcacaagtggcagtgctGaagggagtcttcagaaagct	13	8	3	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	17	40095238	40095238	G	A	SNP	TTC25	ENST00000591658	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.949	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	18	0	0	30	11	26.83	-	-	-	A	40095238	G	A	40095238	1	1	220	0	1	0	0	0	0	0	0	0	16790	1291	45	2		2	TTC25	17	40095238	RNA	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		40095238	41099972	71	13695										
INTS2	0	genome.wustl.edu	37	chr17	59967189	59967189	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aagagcctcttcataagacaGtatatagtagagcaccaaaa	7	8	2	3			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	17	59967189	59967189	G	A	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	silent	c.1966	p.L656	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	62	0	0	94	19	16.81	-	-	-	A	59967189	G	A	59967189	2	1	220	1	0	0	0	0	0	0	0	1	7832	1020	36	4		4	INTS2	17	59967189	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	19871951	59967189	21228021	72	13696										
CACNG1	0	genome.wustl.edu	37	chr17	65052324	65052324	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ggtctcgccctcctgctgttCtccctgcctcgaatgccccg	9	19	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	17	65052324	65052324	C	A	SNP	CACNG1	ENST00000226021	human	ensembl	69_37n	1	known	missense	c.606	p.F202L	1.000	prints_VDCC_g1su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g1su,prints_VDCC_gsu	-	no_errors	CACNG1	HGNC	ENSG00000108878	67	0	0	52	10	15.62	-	-	-	A	65052324	C	A	65052324	3	1	220	1	0	0	0	0	1	0	0	0	2581	912	32	2	620	2	CACNG1	17	65052324	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	5085135	65052324	16142886	73	13697										
ANKRD12	0	genome.wustl.edu	37	chr18	9258366	9258369	+	Frame_Shift_Del	DEL	CAGT	CAGT	-													0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gtctggaaaaccattcacagCagtcaactcaaccagaaatg							TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	CAGT	CAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	18	9258366	9258369	CAGT	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.5101_5104	p.S1702fs	0.170:0.111:0.004:0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	208	0	0	182	51	21.89	-	-	-	-	9258369	CAGT	-	9258366	7	5	220	1	0	1	0	1	0	0	0	0	640	711	25	0	5131	0	ANKRD12	18	9258366	Frame_Shift_Del	DEL	CAGT	TCGA-A8-A09M-01A-11W-A019-09		9258366	68818882	74	13698										
ABCA7	0	genome.wustl.edu	37	chr19	1062286	1062286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	agctgcttgcgcgcctgcgcGgtgtcccggaggcccaggtt	16	14	0	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	19	1062286	1062286	G	T	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.5686	p.G1896C	0.966	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	15	0	0	9	4	30.77	-	-	-	T	1062286	G	T	1062286	3	4	220	1	0	0	0	0	1	0	0	0	37	1116	39	3	5848	3	ABCA7	19	1062286	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09		1062286	58066697	75	13699										
CD97	0	genome.wustl.edu	37	chr19	14513412	14513412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	gtgtgtctgttccccaggccCcgccgtggcgggcatcctct	13	16	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	19	14513412	14513412	C	G	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	missense	c.1187	p.P396R	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	61	0	0	44	6	12	-	-	-	G	14513412	C	G	14513412	3	3	220	1	0	0	0	0	1	0	0	0	3078	623	22	4	1233	4	CD97	19	14513412	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	13451126	14513412	44615571	76	13700										
APLP1	0	genome.wustl.edu	37	chr19	36369538	36369538	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aaagagaagatgaacccgctGgaacagtatgagcgaaaggt	13	6	0	4			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	19	36369538	36369538	G	T	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	silent	c.1632	p.L544	0.984	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	76	0	0	54	9	14.29	-	-	-	T	36369538	G	T	36369538	2	4	220	1	0	0	0	0	0	0	0	1	780	1335	47	4		4	APLP1	19	36369538	Silent	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	21856126	36369538	22759445	77	13701										
TRPM4	0	genome.wustl.edu	37	chr19	49703867	49703867	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	ctcagccacatctccccacaGatgaaggacgtgttcttctt	7	14	4	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	19	49703867	49703867	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	splice_site	c.2779-1	e19-1	1.000	-	-	-	no_errors	TRPM4	HGNC	ENSG00000130529	17	0	0	32	7	17.95	-	-	-	A	49703867	G	A	49703867	5	1	220	1	0	0	0	0	0	0	1	0	16684	956	33	2	2852	2	TRPM4	19	49703867	Splice_Site	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	13334329	49703867	9425116	78	13702										
RALGAPA2	0	genome.wustl.edu	37	chr20	20493753	20493753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgcaggtttggacttctgaaCacctcaaaggacagctcgga	11	10	2	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	20	20493753	20493753	C	T	SNP	RALGAPA2	ENST00000430436	human	ensembl	69_37n	-1	known	missense	c.3710	p.C1237Y	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGAPA2	HGNC	ENSG00000188559	92	0	0	43	31	41.89	-	-	-	T	20493753	C	T	20493753	3	4	220	1	0	0	0	0	1	0	0	0	13097	465	17	4	1393	4	RALGAPA2	20	20493753	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		20493753	42531767	79	13703										
PARD6B	0	genome.wustl.edu	37	chr20	49366477	49366477	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atggcttagaaaaggttccaGggatctttatatccaggctt	10	7	1	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	20	49366477	49366477	G	C	SNP	PARD6B	ENST00000371610	human	ensembl	69_37n	1	known	missense	c.571	p.G191R	0.995	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171	138	0	0	321	86	21.13	-	-	-	C	49366477	G	C	49366477	3	2	220	1	0	0	0	0	1	0	0	0	11519	1000	35	4	581	4	PARD6B	20	49366477	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	28872724	49366477	13659043	80	13704										
MC3R	0	genome.wustl.edu	37	chr20	54824566	54824566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgcacgtcaagcgcatagcaGcactgccacctgccgacggg	12	15	1	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	20	54824566	54824566	G	A	SNP	MC3R	ENST00000243911	human	ensembl	69_37n	1	known	missense	c.667	p.A223T	0.988	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melancort_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089	115	0	0	187	57	23.36	-	-	-	A	54824566	G	A	54824566	3	1	220	1	0	0	0	0	1	0	0	0	9436	971	34	4	669	4	MC3R	20	54824566	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	5458089	54824566	8200954	81	13705										
BRWD1	0	genome.wustl.edu	37	chr21	40569039	40569039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atactgttcacttggtacttCacaatgtacacttccttcac	4	12	3	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	21	40569039	40569039	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5956	p.E1986Q	0.991	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	244	0	0	166	104	38.38	-	-	-	G	40569039	C	G	40569039	3	3	220	1	0	0	0	0	1	0	0	0	1533	835	29	2	1253	2	BRWD1	21	40569039	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		40569039	7560856	82	13706										
C22orf43	0	genome.wustl.edu	37	chr22	23964316	23964316	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	atcatcatcacagtcatcatCttcacttcgtggtaggcata	6	11	7	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	22	23964316	23964316	C	A	SNP	C22orf43	ENST00000317749	human	ensembl	69_37n	-1	known	missense	c.346	p.D116Y	0.008	NULL	NULL	-	no_errors	C22orf43	HGNC	ENSG00000189269	120	0	0	321	45	12.3	-	-	-	A	23964316	C	A	23964316	3	1	220	1	0	0	0	0	1	0	0	0	2170	913	32	2	379	2	C22orf43	22	23964316	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		23964316	27340250	83	13707										
RFPL1	0	genome.wustl.edu	37	chr22	29834893	29834893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tgcactcttccaagaagcaaGcagctgtcccgtctgctcag	9	14	3	1			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	22	29834893	29834893	G	A	SNP	RFPL1	ENST00000354373	human	ensembl	69_37n	1	known	missense	c.113	p.S38N	0.003	NULL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL1	HGNC	ENSG00000128250	266	0	0	555	72	11.48	-	-	-	A	29834893	G	A	29834893	3	1	220	1	0	0	0	0	1	0	0	0	13336	971	34	4	115	4	RFPL1	22	29834893	Missense_Mutation	SNP	G	TCGA-A8-A09M-01A-11W-A019-09	5870577	29834893	21469673	84	13708										
HUWE1	0	genome.wustl.edu	37	chrX	53565354	53565354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	tctaccaggacagcaaaaggCccatcagcaaggtgggtcgt	12	11	2	0			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	X	53565354	53565354	C	A	SNP	HUWE1	ENST00000427052	human	ensembl	69_37n	-1	known	missense	c.9040	p.A3014S	1.000	NULL	pfam_HECT,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUWE1	HGNC	ENSG00000086758	64	0	0	107	16	13.01	-	-	-	A	53565354	C	A	53565354	3	1	220	1	0	0	0	0	1	0	0	0	7515	726	26	4	1216	4	HUWE1	23	53565354	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09		53565354	101705206	85	13709										
ATP1B4	0	genome.wustl.edu	37	chrX	119509272	119509272	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.104651162790698	9	0.553235724720845	1.31131078224101	1.39225589225589	1.2530303030303	1	1	0	aatgaatgtagattgtccccCggggcagtacttcatccaag	10	10	1	2			TCGA-A8-A09M-01A-11W-A019-09	TCGA-A8-A09M-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e92515a-8049-4ebb-9117-a137c06e5d04	e689f01f-e944-408f-9dbe-894b816b09ce	X	119509272	119509272	C	A	SNP	ATP1B4	ENST00000218008	human	ensembl	69_37n	1	known	missense	c.608	p.P203Q	0.239	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B4	HGNC	ENSG00000101892	219	0	0	269	49	15.41	-	-	-	A	119509272	C	A	119509272	3	1	220	1	0	0	0	0	1	0	0	0	1139	652	23	3	626	3	ATP1B4	23	119509272	Missense_Mutation	SNP	C	TCGA-A8-A09M-01A-11W-A019-09	65943918	119509272	35761288	86	13710										
EPHA8	0	genome.wustl.edu	37	chr1	22903295	22903295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cacccaagatgtactgcagcGcggagggcgagtggctcgtg	16	11	0	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	22903295	22903295	G	A	SNP	EPHA8	ENST00000166244	human	ensembl	69_37n	1	known	missense	c.745	p.A249T	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	11	0	0	3	5	62.5	-	-	-	A	22903295	G	A	22903295	3	1	221	1	0	0	0	0	1	0	0	0	5210	1087	38	1	755	1	EPHA8	1	22903295	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		22903295	226347326	1	13711										
CNKSR1	0	genome.wustl.edu	37	chr1	26509860	26509860	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cccactgactcccgactgcaGatccagcctggagacgaggt	11	15	0	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	26509860	26509860	G	A	SNP	CNKSR1	ENST00000528281	human	ensembl	69_37n	1	known	missense	c.77	p.R26K	0.940	pfam_PDZ,superfamily_PDZ	pfam_PDZ,superfamily_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNKSR1	HGNC	ENSG00000142675	65	0	0	39	10	20.41	-	-	-	A	26509860	G	A	26509860	3	1	221	1	0	0	0	0	1	0	0	0	3636	933	33	2	738	2	CNKSR1	1	26509860	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	3606565	26509860	222740761	2	13712										
KIF2C	0	genome.wustl.edu	37	chr1	45227643	45227643	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	atatactttaaacaccctgaGatatgcagacaggtactagt	7	8	0	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	45227643	45227643	G	C	SNP	KIF2C	ENST00000372224	human	ensembl	69_37n	1	known	missense	c.1739	p.R580T	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC	ENSG00000142945	71	0	0	50	17	25.37	-	-	-	C	45227643	G	C	45227643	3	2	221	1	0	0	0	0	1	0	0	0	8351	942	33	2	1805	2	KIF2C	1	45227643	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	18717783	45227643	204022978	3	13713										
PRDX1	0	genome.wustl.edu	37	chr1	45980571	45980572	+	Frame_Shift_Ins	INS	-	-	A													0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agatgccttcatcagcctttINSaagaccccataatcctgagc							TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	45980571	45980572	-	A	INS	PRDX1	ENST00000262746	human	ensembl	69_37n	-1	known	frame_shift_ins	c.357_356	p.L119fs	1.000:1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX1	HGNC	ENSG00000117450	140	0	0	67	41	37.96	-	-	-	A	45980572	-	A	45980571	7	5	221	1	0	1	1	0	0	0	0	0	12545	1751	61	0	254	0	PRDX1	1	45980571	Frame_Shift_Ins	INS	-	TCGA-A8-A09N-01A-11W-A019-09	752928	45980571	203270050	4	13714										
KIAA0494	0	genome.wustl.edu	37	chr1	47183644	47183644	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cggagctggactcagagtctGagtcgggaggctcagtgcga	17	9	3	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	47183644	47183644	G	A	SNP	KIAA0494	ENST00000371933	human	ensembl	69_37n	-1	known	missense	c.116	p.S39L	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	KIAA0494	HGNC	ENSG00000159658	56	0	0	16	7	30.43	-	-	-	A	47183644	G	A	47183644	3	1	221	1	0	0	0	0	1	0	0	0	8231	1294	45	2	1415	2	KIAA0494	1	47183644	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	1203073	47183644	202066977	5	13715										
PODN	0	genome.wustl.edu	37	chr1	53544159	53544159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cgccatccggagcgtggacgCgaatgtgctgacccccatcc	12	16	0	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	53544159	53544159	C	T	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	missense	c.1121	p.A374V	0.624	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	22	0	0	7	32	82.05	-	-	-	T	53544159	C	T	53544159	3	4	221	1	0	0	0	0	1	0	0	0	12252	768	27	1	1151	1	PODN	1	53544159	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	6360515	53544159	195706462	6	13716										
SH2D2A	0	genome.wustl.edu	37	chr1	156784032	156784032	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aaggtcaccgcgctctcgctGaaccgcaccaagtagcaccc	9	17	2	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	156784032	156784032	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	silent	c.393	p.F131	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	18	0	0	11	7	38.89	-	-	-	A	156784032	G	A	156784032	2	1	221	1	0	0	0	0	0	0	0	1	14320	1281	45	2		2	SH2D2A	1	156784032	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	103239873	156784032	92466589	7	13717										
SH2D2A	0	genome.wustl.edu	37	chr1	156784112	156784112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ggtgacggagagagggggccGaaccctgctctgacacttcc	15	12	1	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	156784112	156784112	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	missense	c.313	p.R105W	0.001	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	15	0	0	12	7	36.84	-	-	-	A	156784112	G	A	156784112	3	1	221	1	0	0	0	0	1	0	0	0	14320	1057	37	1	906	1	SH2D2A	1	156784112	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	80	156784112	92466509	8	13718										
SPTA1	0	genome.wustl.edu	37	chr1	158641868	158641868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cctcttgtctactcatccaaCtgtccacttgctcactgtct	4	16	5	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	158641868	158641868	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1469	p.S490I	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	77	0	0	65	25	27.78	-	-	-	A	158641868	C	A	158641868	3	1	221	1	0	0	0	0	1	0	0	0	15207	565	20	4	5958	4	SPTA1	1	158641868	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	1857756	158641868	90608753	9	13719										
KLHL12	0	genome.wustl.edu	37	chr1	202862414	202862414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agcactgtggcccctacataGcatcgtggagtggtcatact	11	11	1	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	1	202862414	202862414	G	C	SNP	KLHL12	ENST00000435533	human	ensembl	69_37n	-1	known	missense	c.1647	p.C549W	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153	236	0	0	118	74	38.54	-	-	-	C	202862414	G	C	202862414	3	2	221	1	0	0	0	0	1	0	0	0	8421	963	34	4	181	4	KLHL12	1	202862414	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	44220546	202862414	46388207	10	13720										
VWA3B	0	genome.wustl.edu	37	chr2	98928506	98928507	+	Frame_Shift_Ins	INS	-	-	G													0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gagcccagggtttgggtgatINSggggggggaacacaacatcg							TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	2	98928506	98928507	-	G	INS	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1977_1978	p.T662fs	0.000:0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	26	0	0	8	2	20	-	-	-	G	98928507	-	G	98928506	7	5	221	1	0	1	1	0	0	0	0	0	17338	1479	51	0		0	VWA3B	2	98928506	Frame_Shift_Ins	INS	-	TCGA-A8-A09N-01A-11W-A019-09		98928506	144270867	11	13721										
MAP4K4	0	genome.wustl.edu	37	chr2	102482935	102482935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gagagagtggagaagctggtGcccagacctggcagtggcag	18	8	0	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	2	102482935	102482935	G	T	SNP	MAP4K4	ENST00000421882	human	ensembl	69_37n	1	novel	missense	c.1465	p.A489S	1.000	NULL	pfam_Citron,superfamily_Kinase-like_dom,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K4	HGNC	ENSG00000071054	69	0	0	19	27	58.7	-	-	-	T	102482935	G	T	102482935	3	4	221	1	0	0	0	0	1	0	0	0	9333	1306	46	4	2324	4	MAP4K4	2	102482935	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	3554429	102482935	140716438	12	13722										
GTDC1	0	genome.wustl.edu	37	chr2	144764838	144764838	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tcaacagtcagattttgtttAttttcaccatgatgagagct	7	7	3	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	2	144764838	144764838	A	G	SNP	GTDC1	ENST00000344850	human	ensembl	69_37n	-1	known	silent	c.786	p.N262	0.000	NULL	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964	155	0	0	51	84	62.22	-	-	-	G	144764838	A	G	144764838	2	3	221	1	0	0	0	0	0	0	0	1	6902	446	16	5		5	GTDC1	2	144764838	Silent	SNP	A	TCGA-A8-A09N-01A-11W-A019-09	42281903	144764838	98434535	13	13723										
PKP4	0	genome.wustl.edu	37	chr2	159481540	159481540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ttggctctccgtcagtgaccGacccccgacctctgaacccc	8	19	3	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	2	159481540	159481540	G	A	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.754	p.D252N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	173	1	0.57	30	76	71.7	-	-	-	A	159481540	G	A	159481540	3	1	221	1	0	0	0	0	1	0	0	0	12061	1058	37	1	776	1	PKP4	2	159481540	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	14716702	159481540	83717833	14	13724										
SETMAR	0	genome.wustl.edu	37	chr3	4355372	4355372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aaagtcgaacatcagttgtgGaaatgagaaggaacccagca	11	7	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	4355372	4355372	G	C	SNP	SETMAR	ENST00000358065	human	ensembl	69_37n	1	known	missense	c.947	p.G316A	0.000	NULL	pfam_Transposase_1,pfam_SET_dom,pfam_Pre-SET_dom,pfam_Transposase_Tc1-like,pfam_Transposase_14,superfamily_Homeodomain-like,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETMAR	HGNC	ENSG00000170364	111	0	0	52	23	30.67	-	-	-	C	4355372	G	C	4355372	3	2	221	1	0	0	0	0	1	0	0	0	14228	1174	41	2	953	2	SETMAR	3	4355372	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		4355372	193667058	15	13725										
PLCL2	0	genome.wustl.edu	37	chr3	17052803	17052803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aatgaagtgcttgccagcaaGtacgccaatgaaaatccagg	10	9	0	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	17052803	17052803	G	A	SNP	PLCL2	ENST00000419842	human	ensembl	69_37n	1	putative	missense	c.818	p.S273N	0.998	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCL2	HGNC	ENSG00000154822	215	0	0	109	54	33.13	-	-	-	A	17052803	G	A	17052803	3	1	221	1	0	0	0	0	1	0	0	0	12114	1020	36	4	1965	4	PLCL2	3	17052803	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	12697431	17052803	180969627	16	13726										
ARPP21	0	genome.wustl.edu	37	chr3	35729359	35729359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	acctctgaaaaacccaagatCagaatgttatcaaaaggtga	7	8	3	4			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	35729359	35729359	C	G	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	missense	c.390	p.I130M	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	541	0	0	310	191	37.97	-	-	-	G	35729359	C	G	35729359	3	3	221	1	0	0	0	0	1	0	0	0	982	816	29	2	417	2	ARPP21	3	35729359	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	18676556	35729359	162293071	17	13727										
UBA3	0	genome.wustl.edu	37	chr3	69113243	69113243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	atagaaagtgtcgttaaaatCttgaatcttgttgaaatgtc	8	4	2	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	69113243	69113243	C	G	SNP	UBA3	ENST00000361055	human	ensembl	69_37n	-1	known	missense	c.448	p.D150H	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_E2_binding,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA3	HGNC	ENSG00000144744	107	0	0	62	39	38.61	-	-	-	G	69113243	C	G	69113243	3	3	221	1	0	0	0	0	1	0	0	0	16926	913	32	2	991	2	UBA3	3	69113243	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	33383884	69113243	128909187	18	13728										
BOC	0	genome.wustl.edu	37	chr3	113004392	113004392	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tcctgtcctggaagcagtgtGggaccctccatttcactcag	10	13	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	113004392	113004392	G	T	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	missense	c.3140	p.W1047L	0.997	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	34	0	0	19	15	44.12	-	-	-	T	113004392	G	T	113004392	3	4	221	1	0	0	0	0	1	0	0	0	1486	1357	47	4	3203	4	BOC	3	113004392	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	43891149	113004392	85018038	19	13729										
ATP13A4	0	genome.wustl.edu	37	chr3	193185105	193185105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aaaaaggaggggatgctaacCagtctgcagtaccacggctc	12	10	1	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	193185105	193185105	C	T	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	missense	c.1114	p.G372R	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	123	0	0	71	42	37.17	-	-	-	T	193185105	C	T	193185105	3	4	221	1	0	0	0	0	1	0	0	0	1130	608	21	4	2560	4	ATP13A4	3	193185105	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	80180713	193185105	4837325	20	13730										
SENP5	0	genome.wustl.edu	37	chr3	196613257	196613257	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gactctgggtcaggaaaatcAgacaagttctgtcagtgatg	12	7	5	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	196613257	196613257	A	C	SNP	SENP5	ENST00000323460	human	ensembl	69_37n	1	known	missense	c.1205	p.Q402P	0.001	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP5	HGNC	ENSG00000119231	122	0	0	94	51	35.17	-	-	-	C	196613257	A	C	196613257	3	2	221	1	0	0	0	0	1	0	0	0	14137	188	7	5	1207	5	SENP5	3	196613257	Missense_Mutation	SNP	A	TCGA-A8-A09N-01A-11W-A019-09	3428152	196613257	1409173	21	13731										
KIAA0226	0	genome.wustl.edu	37	chr3	197421375	197421375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ctcttccacttcctcctcctCtaggcactggctcatcatgt	5	17	4	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	3	197421375	197421375	C	G	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.1555	p.E519Q	0.998	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	121	0	0	63	52	45.22	-	-	-	G	197421375	C	G	197421375	3	3	221	1	0	0	0	0	1	0	0	0	8214	922	32	2	1407	2	KIAA0226	3	197421375	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	808118	197421375	601055	22	13732										
CENPE	0	genome.wustl.edu	37	chr4	104080339	104080339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gatcagtgcttttataattcGactgtgtagttgctaggtca	10	6	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	4	104080339	104080339	G	A	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.2429	p.S810L	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	180	0	0	113	66	36.87	-	-	-	A	104080339	G	A	104080339	3	1	221	1	0	0	0	0	1	0	0	0	3259	1059	37	1	5788	1	CENPE	4	104080339	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		104080339	87073937	23	13733										
LRP2BP	0	genome.wustl.edu	37	chr4	186291899	186291899	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	attgccatgcctctgccgatGaactccgggagacagtctgt	11	12	2	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	4	186291899	186291899	G	A	SNP	LRP2BP	ENST00000362004	human	ensembl	69_37n	-1	known	silent	c.879	p.F293	1.000	NULL	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771	114	0	0	50	39	43.82	-	-	-	A	186291899	G	A	186291899	2	1	221	1	0	0	0	0	0	0	0	1	9023	1281	45	2		2	LRP2BP	4	186291899	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	82211560	186291899	4862377	24	13734										
TRIML1	0	genome.wustl.edu	37	chr4	189068190	189068190	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	accgagtgggaagtgggcatCtgcaaggactctgtgagcag	16	8	2	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	4	189068190	189068190	C	T	SNP	TRIML1	ENST00000332517	human	ensembl	69_37n	1	known	silent	c.1071	p.I357	0.984	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108	38	0	0	64	46	41.82	-	-	-	T	189068190	C	T	189068190	2	4	221	1	0	0	0	0	0	0	0	1	16646	903	32	2		2	TRIML1	4	189068190	Silent	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	2776291	189068190	2086086	25	13735										
CDH9	0	genome.wustl.edu	37	chr5	26902585	26902585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aatgttttcaaagtacttacTttattaaattgttcctggca	5	6	1	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	26902585	26902585	T	C	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.1253	p.K418R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	161	0	0	99	66	40	-	-	-	C	26902585	T	C	26902585	3	2	221	1	0	0	0	0	1	0	0	0	3146	1623	56	5	1140	5	CDH9	5	26902585	Missense_Mutation	SNP	T	TCGA-A8-A09N-01A-11W-A019-09		26902585	154012675	26	13736										
CDH6	0	genome.wustl.edu	37	chr5	31305333	31305333	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ccttaaagtggaagcctccaAtccttatgttgagccacgat	8	11	0	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	31305333	31305333	A	G	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	missense	c.1052	p.N351S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	323	0	0	146	73	33.33	-	-	-	G	31305333	A	G	31305333	3	3	221	1	0	0	0	0	1	0	0	0	3143	101	4	5	1074	5	CDH6	5	31305333	Missense_Mutation	SNP	A	TCGA-A8-A09N-01A-11W-A019-09	4402748	31305333	149609927	27	13737										
PRKAA1	0	genome.wustl.edu	37	chr5	40775557	40775557	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aatagctctcctcctgagacAtattccatcaccatgaaaat	4	12	2	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	40775557	40775557	A	G	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	silent	c.318	p.Y106	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	150	0	0	99	74	42.77	-	-	-	G	40775557	A	G	40775557	2	3	221	1	0	0	0	0	0	0	0	1	12574	224	8	5		5	PRKAA1	5	40775557	Silent	SNP	A	TCGA-A8-A09N-01A-11W-A019-09	9470224	40775557	140139703	28	13738										
KIF2A	0	genome.wustl.edu	37	chr5	61643923	61643923	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	accctgaccttgttcctgatGaagaaattgaacccagtcca	7	12	0	5			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	61643923	61643923	G	A	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.208	p.E70K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	214	0	0	125	75	37.5	-	-	-	A	61643923	G	A	61643923	3	1	221	1	0	0	0	0	1	0	0	0	8349	1291	45	2	218	2	KIF2A	5	61643923	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	20868366	61643923	119271337	29	13739										
CDK7	0	genome.wustl.edu	37	chr5	68551332	68551332	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ctaatattagccttgtctttGattttatggaaactgatcta	6	6	2	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	68551332	68551332	G	A	SNP	CDK7	ENST00000256443	human	ensembl	69_37n	1	known	missense	c.274	p.D92N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK7	HGNC	ENSG00000134058	206	1	0.48	161	103	39.02	-	-	-	A	68551332	G	A	68551332	3	1	221	1	0	0	0	0	1	0	0	0	3178	1290	45	2	292	2	CDK7	5	68551332	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	6907409	68551332	112363928	30	13740										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769441	140769441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cgttgcacctggtcttcgccGacagcttgcaggaggtgctg	14	12	1	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	5	140769441	140769441	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.1990	p.D664N	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	60	0	0	39	15	27.78	-	-	-	A	140769441	G	A	140769441	3	1	221	1	0	0	0	0	1	0	0	0	11638	1058	37	1	1992	1	PCDHGB4	5	140769441	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	72218109	140769441	40145819	31	13741										
LGSN	0	genome.wustl.edu	37	chr6	63990178	63990178	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ctatgaagtccatctaagccGgcagcaacagttgcagccag	10	12	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	6	63990178	63990178	G	A	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	silent	c.1278	p.A426	0.103	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	149	0	0	88	50	36.23	-	-	-	A	63990178	G	A	63990178	2	1	221	1	0	0	0	0	0	0	0	1	8814	1103	39	1		1	LGSN	6	63990178	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		63990178	107124889	32	13742										
PRDM1	0	genome.wustl.edu	37	chr6	106553664	106553664	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gcgatggcagcccccagcagCgacgaagccatgaatctcat	11	14	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	6	106553664	106553664	C	A	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.1629	p.S543R	0.067	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	61	0	0	127	25	16.45	-	-	-	A	106553664	C	A	106553664	3	1	221	1	0	0	0	0	1	0	0	0	12531	767	27	3	1660	3	PRDM1	6	106553664	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	42563486	106553664	64561403	33	13743										
NPC1L1	0	genome.wustl.edu	37	chr7	44579387	44579387	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cctgtgtctccctggaagttGagccagcgctgggcattgca	13	12	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	7	44579387	44579387	G	C	SNP	NPC1L1	ENST00000289547	human	ensembl	69_37n	-1	known	silent	c.609	p.L203	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	36	0	0	14	7	33.33	-	-	-	C	44579387	G	C	44579387	2	2	221	1	0	0	0	0	0	0	0	1	10643	1277	45	2		2	NPC1L1	7	44579387	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		44579387	114559276	34	13744										
TYW1B	0	genome.wustl.edu	37	chr7	72093976	72093976	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	catcagtctgtagacagttcGttgttgctaaaacaaaggaa	9	7	2	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	7	72093976	72093976	G	A	SNP	TYW1B	ENST00000438125	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	TYW1B	HGNC	ENSG00000254184	30	0	0	15	13	46.43	-	-	-	A	72093976	G	A	72093976	1	1	221	0	1	0	0	0	0	0	0	0	16916	1153	40	1		1	TYW1B	7	72093976	RNA	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	27514589	72093976	87044687	35	13745										
CUX1	0	genome.wustl.edu	37	chr7	101844815	101844815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	atcctcacccccaagcttctGtccacctcgcccatgcccac	4	22	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	7	101844815	101844815	G	A	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	silent	c.2271	p.L757	0.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	70	0	0	35	28	43.75	-	-	-	A	101844815	G	A	101844815	2	1	221	1	0	0	0	0	0	0	0	1	4095	1364	48	4		4	CUX1	7	101844815	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	29750839	101844815	57293848	36	13746										
MGAM	0	genome.wustl.edu	37	chr7	141763364	141763364	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ggctgcagggacgcctctctGaaccaccctccctacatgcc	9	18	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	7	141763364	141763364	G	A	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.4323	p.L1441	0.998	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	38	0	0	21	12	36.36	-	-	-	A	141763364	G	A	141763364	2	1	221	1	0	0	0	0	0	0	0	1	9612	1277	45	2		2	MGAM	7	141763364	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	39918549	141763364	17375299	37	13747										
WDR60	0	genome.wustl.edu	37	chr7	158672659	158672659	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gagaaatcggcaaaagatgaGcccaggaaaagggaatccca	12	8	0	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	7	158672659	158672659	G	A	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	silent	c.858	p.E286	0.264	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	335	0	0	164	92	35.94	-	-	-	A	158672659	G	A	158672659	2	1	221	1	0	0	0	0	0	0	0	1	17408	962	34	4		4	WDR60	7	158672659	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	16909295	158672659	466004	38	13748										
KCNB2	0	genome.wustl.edu	37	chr8	73848476	73848476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gcgtgctgcagttccaaaacGtgaggcgcgtggtccagatc	14	11	0	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	8	73848476	73848476	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	missense	c.886	p.V296M	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	148	0	0	99	68	40.72	-	-	-	A	73848476	G	A	73848476	3	1	221	1	0	0	0	0	1	0	0	0	8067	1145	40	1	892	1	KCNB2	8	73848476	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		73848476	72515546	39	13749										
ZFHX4	0	genome.wustl.edu	37	chr8	77745629	77745629	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gatcttacagagcagcagttGagatcgacctcaggtaatgg	12	8	2	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	8	77745629	77745629	G	A	SNP	ZFHX4	ENST00000523625	human	ensembl	69_37n	1	known	missense	c.214	p.E72K	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFHX4	HGNC	ENSG00000091656	78	0	0	56	51	47.66	-	-	-	A	77745629	G	A	77745629	3	1	221	1	0	0	0	0	1	0	0	0	17731	1281	45	2	3395	2	ZFHX4	8	77745629	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	3897153	77745629	68618393	40	13750										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885242	88885242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ttcttcttcgttcacatgcaCgggtaggtaggcggagttat	12	8	3	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	8	88885242	88885242	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.958	p.V320M	0.976	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	105	0	0	97	28	22.4	-	-	-	T	88885242	C	T	88885242	3	4	221	1	0	0	0	0	1	0	0	0	4304	536	19	1	233	1	DCAF4L2	8	88885242	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	11139613	88885242	57478780	41	13751										
ANGPT1	0	genome.wustl.edu	37	chr8	108359214	108359214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tctggtctgctctgcagtctGagagaggaggctggttccta	14	9	4	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	8	108359214	108359214	G	C	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.409	p.Q137E	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	281	0	0	118	93	44.08	-	-	-	C	108359214	G	C	108359214	3	2	221	1	0	0	0	0	1	0	0	0	610	1299	45	2	1119	2	ANGPT1	8	108359214	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	19473972	108359214	38004808	42	13752										
NUP188	0	genome.wustl.edu	37	chr9	131721088	131721088	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ttgggttcctcagattgcagAttattattatgaagaaagaa	9	4	1	5			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	9	131721088	131721088	A	C	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.380	p.D127A	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	112	0	0	100	36	26.47	-	-	-	C	131721088	A	C	131721088	3	2	221	1	0	0	0	0	1	0	0	0	10831	333	12	5	406	5	NUP188	9	131721088	Missense_Mutation	SNP	A	TCGA-A8-A09N-01A-11W-A019-09		131721088	9492343	43	13753										
SETX	0	genome.wustl.edu	37	chr9	135156918	135156918	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ggatgagcttattgcagcgaTggatgagtggagtaagagtc	16	4	0	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	9	135156918	135156918	T	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.6590	p.H2197R	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	154	0	0	64	51	44.35	-	-	-	C	135156918	T	C	135156918	3	2	221	1	0	0	0	0	1	0	0	0	14229	1464	51	5	1471	5	SETX	9	135156918	Missense_Mutation	SNP	T	TCGA-A8-A09N-01A-11W-A019-09	3435830	135156918	6056513	44	13754										
ECHS1	0	genome.wustl.edu	37	chr10	135179586	135179586	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agtgtctcaacaggacaaatCttgctgacaagacctgaaac	8	10	2	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	10	135179586	135179586	C	T	SNP	ECHS1	ENST00000368547	human	ensembl	69_37n	-1	known	silent	c.633	p.K211	0.990	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHS1	HGNC	ENSG00000127884	25	0	0	11	8	42.11	-	-	-	T	135179586	C	T	135179586	2	4	221	1	0	0	0	0	0	0	0	1	4931	912	32	2		2	ECHS1	10	135179586	Silent	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		135179586	355161	45	13755										
PRKRIR	0	genome.wustl.edu	37	chr11	76063702	76063704	+	In_Frame_Del	DEL	TTC	TTC	-													0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tcaaatagagattttaggtaTtctttgttttccttctcttc							TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	11	76063702	76063704	TTC	-	DEL	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	in_frame_del	c.492_490	p.E164in_frame_del	0.895:0.999:1.000	NULL	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	131	0	0	100	40	28.37	-	-	-	-	76063704	TTC	-	76063702	7	5	221	1	0	1	0	1	0	0	0	0	12607	1490	52	0	1797	0	PRKRIR	11	76063702	In_Frame_Del	DEL	TTC	TCGA-A8-A09N-01A-11W-A019-09		76063702	58942814	46	13756										
CEP57	0	genome.wustl.edu	37	chr11	95552061	95552061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gaaacgcatgcaagctaaggCagctgaggtaagttaaaatg	12	6	0	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	11	95552061	95552061	C	G	SNP	CEP57	ENST00000325542	human	ensembl	69_37n	1	known	missense	c.692	p.A231G	1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	210	0	0	97	72	42.6	-	-	-	G	95552061	C	G	95552061	3	3	221	1	0	0	0	0	1	0	0	0	3285	710	25	4	714	4	CEP57	11	95552061	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	19488359	95552061	39454455	47	13757										
KIAA1377	0	genome.wustl.edu	37	chr11	101828905	101828905	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tgtctggttcacagagctatAgattctgccttgccttccgc	9	12	3	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	11	101828905	101828905	A	C	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	silent	c.513	p.I171	1.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	929	2	0.21	553	308	35.73	-	-	-	C	101828905	A	C	101828905	2	2	221	1	0	0	0	0	0	0	0	1	8279	410	15	5		5	KIAA1377	11	101828905	Silent	SNP	A	TCGA-A8-A09N-01A-11W-A019-09	6276844	101828905	33177611	48	13758										
MMP3	0	genome.wustl.edu	37	chr11	102708128	102708128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	catggaatttctcttctcatCaaatctgtaccaagtaaaag	5	9	4	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	11	102708128	102708128	C	G	SNP	MMP3	ENST00000299855	human	ensembl	69_37n	-1	known	missense	c.1234	p.D412H	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP3	HGNC	ENSG00000149968	88	0	0	68	29	29.9	-	-	-	G	102708128	C	G	102708128	3	3	221	1	0	0	0	0	1	0	0	0	9738	826	29	2	207	2	MMP3	11	102708128	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	879223	102708128	32298388	49	13759										
GRAMD1B	0	genome.wustl.edu	37	chr11	123481044	123481044	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gctcggaacaagagccgactCaggtgtggtgtgtggaagtc	16	8	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	11	123481044	123481044	C	G	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	silent	c.1488	p.L496	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	126	1	0.79	86	31	26.5	-	-	-	G	123481044	C	G	123481044	2	3	221	1	0	0	0	0	0	0	0	1	6799	813	29	2		2	GRAMD1B	11	123481044	Silent	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	20772916	123481044	11525472	50	13760										
ALG10B	0	genome.wustl.edu	37	chr12	38714107	38714107	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tgatgtgtctttatggaaatCataaaacttcagccttcctt	6	8	3	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	12	38714107	38714107	C	T	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	1	known	missense	c.514	p.H172Y	1.000	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	382	0	0	276	180	39.47	-	-	-	T	38714107	C	T	38714107	3	4	221	1	0	0	0	0	1	0	0	0	512	826	29	2	524	2	ALG10B	12	38714107	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		38714107	95137788	51	13761										
R3HDM2	0	genome.wustl.edu	37	chr12	57660598	57660598	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ctcagagccagggggttgcaGaaaccctacagaagggctgg	15	10	1	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	12	57660598	57660598	G	A	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	silent	c.2005	p.L669	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	18	0	0	18	21	53.85	-	-	-	A	57660598	G	A	57660598	2	1	221	1	0	0	0	0	0	0	0	1	12971	933	33	2		2	R3HDM2	12	57660598	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	18946491	57660598	76191297	52	13762										
MYBPC1	0	genome.wustl.edu	37	chr12	102025811	102025811	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cattgcaggtgtacacatttGagatgcagatcatcaaggcc	10	9	2	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	12	102025811	102025811	G	C	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	missense	c.451	p.E151Q	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	73	0	0	40	18	31.03	-	-	-	C	102025811	G	C	102025811	3	2	221	1	0	0	0	0	1	0	0	0	10083	1291	45	2	481	2	MYBPC1	12	102025811	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	44365213	102025811	31826084	53	13763										
RBM26	0	genome.wustl.edu	37	chr13	79932554	79932554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gaaagcctgggctgtttgttCtattaaaatttggtctgcaa	10	6	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	13	79932554	79932554	C	G	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	missense	c.1544	p.R515T	1.000	NULL	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	194	1	0.51	50	79	61.24	-	-	-	G	79932554	C	G	79932554	3	3	221	1	0	0	0	0	1	0	0	0	13209	913	32	2	1442	2	RBM26	13	79932554	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		79932554	35237324	54	13764										
TSHR	0	genome.wustl.edu	37	chr14	81609330	81609330	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agagcagtatgcagagcttgCgccagagaaaatctgtgaat	12	7	1	4			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	14	81609330	81609330	C	A	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.928	p.R310S	1.000	prints_TSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	294	1	0.34	55	92	62.59	-	-	-	A	81609330	C	A	81609330	3	1	221	1	0	0	0	0	1	0	0	0	16718	768	27	3	1103	3	TSHR	14	81609330	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		81609330	25740210	55	13765										
AHNAK2	0	genome.wustl.edu	37	chr14	105413154	105413154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tggccctctgggagtttcacGtccacctggccagcctggac	12	15	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	14	105413154	105413154	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.8634	p.D2878	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	93	0	0	9	19	67.86	-	-	-	A	105413154	G	A	105413154	2	1	221	1	0	0	0	0	0	0	0	1	415	1136	40	1		1	AHNAK2	14	105413154	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	23803824	105413154	1936386	56	13766										
NTRK3	0	genome.wustl.edu	37	chr15	88671941	88671941	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	caacaggtaaagcagacttaCacaagataaagttatccgtg	8	8	0	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	15	88671941	88671941	C	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	splice_site	c.1228+1	e9+1	0.993	-	-	-	no_errors	NTRK3	HGNC	ENSG00000140538	119	0	0	64	26	28.89	-	-	-	A	88671941	C	A	88671941	5	1	221	1	0	0	0	0	0	0	1	0	10781	492	17	4	1592	4	NTRK3	15	88671941	Splice_Site	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		88671941	13859451	57	13767										
LRRK1	0	genome.wustl.edu	37	chr15	101549212	101549212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cggaagctgaacctctccgaCaaccacctgggggagctgcc	12	15	1	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	15	101549212	101549212	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	silent	c.933	p.D311	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	60	0	0	25	13	34.21	-	-	-	T	101549212	C	T	101549212	2	4	221	1	0	0	0	0	0	0	0	1	9098	477	17	4		4	LRRK1	15	101549212	Silent	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	12877271	101549212	982180	58	13768										
WRAP53	0	genome.wustl.edu	37	chr17	7606072	7606072	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tgtctccaggatgctgagctCctgtgctgggatctccggca	13	12	2	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	17	7606072	7606072	C	A	SNP	WRAP53	ENST00000316024	human	ensembl	69_37n	1	known	silent	c.1176	p.L392	0.971	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	52	0	0	3	17	85	-	-	-	A	7606072	C	A	7606072	2	1	221	1	0	0	0	0	0	0	0	1	17497	842	30	2		2	WRAP53	17	7606072	Silent	SNP	C	TCGA-A8-A09N-01A-11W-A019-09		7606072	73589138	59	13769										
DNAH17	0	genome.wustl.edu	37	chr17	76472688	76472688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tggtggaggccatggtgactCtatgcaatgtttcctggtct	13	8	2	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	17	76472688	76472688	C	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.8078	p.R2693T	0.042	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	17	0	0	7	12	63.16	-	-	-	G	76472688	C	G	76472688	3	3	221	1	0	0	0	0	1	0	0	0	4637	913	32	2	5388	2	DNAH17	17	76472688	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	68866616	76472688	4722522	60	13770										
ZNRF4	0	genome.wustl.edu	37	chr19	5455667	5455667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ccaaaggcctcatgcctgccGcctccagtgggacctagcag	11	16	1	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	19	5455667	5455667	G	A	SNP	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	silent	c.165	p.P55	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	51	0	0	44	23	33.82	-	-	-	A	5455667	G	A	5455667	2	1	221	1	0	0	0	0	0	0	0	1	18307	1074	38	1		1	ZNRF4	19	5455667	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		5455667	53673316	61	13771										
MUC16	0	genome.wustl.edu	37	chr19	9062767	9062767	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agtcacagtcgagtgggtttCtacccagttgggtgttgttg	14	7	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	19	9062767	9062767	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.24679	p.E8227Q	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	119	0	0	191	328	63.2	-	-	-	G	9062767	C	G	9062767	3	3	221	1	0	0	0	0	1	0	0	0	10045	922	32	2	19172	2	MUC16	19	9062767	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	3607100	9062767	50066216	62	13772										
PDE4C	0	genome.wustl.edu	37	chr19	18321933	18321933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tctgtcaggcccgtcccgctCggggttggtgaggtctgagg	17	11	3	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	19	18321933	18321933	C	T	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	missense	c.1945	p.E649K	0.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	59	0	0	15	31	65.96	-	-	-	T	18321933	C	T	18321933	3	4	221	1	0	0	0	0	1	0	0	0	11714	893	31	1	197	1	PDE4C	19	18321933	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	9259166	18321933	40807050	63	13773										
NCOA6	0	genome.wustl.edu	37	chr20	33337239	33337239	+	Frame_Shift_Del	DEL	G	G	-													0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gactatttttcttcttccgaGggggtttcttcttcttcggt							TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	20	33337239	33337239	G	-	DEL	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	frame_shift_del	c.2759	p.P920fs	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	304	0	0	179	83	31.09	-	-	-	-	33337239	G	-	33337239	7	5	221	1	0	1	0	1	0	0	0	0	10305	1000	35	0	3460	0	NCOA6	20	33337239	Frame_Shift_Del	DEL	G	TCGA-A8-A09N-01A-11W-A019-09		33337239	29688281	64	13774										
DLGAP4	0	genome.wustl.edu	37	chr20	35155390	35155390	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	actcagccaccgagagcgcaGacagcatcgagatttatgtc	10	12	1	3			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	20	35155390	35155390	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.2935	p.D979N	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	34	0	0	29	23	44.23	-	-	-	A	35155390	G	A	35155390	3	1	221	1	0	0	0	0	1	0	0	0	4598	942	33	2	3096	2	DLGAP4	20	35155390	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	1818151	35155390	27870130	65	13775										
DOK5	0	genome.wustl.edu	37	chr20	53260054	53260054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	gcaccatggtgcccctgcctCgcagcgcctactggcagcac	11	18	0	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	20	53260054	53260054	C	T	SNP	DOK5	ENST00000262593	human	ensembl	69_37n	1	known	missense	c.793	p.R265C	0.998	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134	54	0	0	31	28	47.46	-	-	-	T	53260054	C	T	53260054	3	4	221	1	0	0	0	0	1	0	0	0	4735	884	31	1	819	1	DOK5	20	53260054	Missense_Mutation	SNP	C	TCGA-A8-A09N-01A-11W-A019-09	18104664	53260054	9765466	66	13776										
PGK1	0	genome.wustl.edu	37	chrX	77373596	77373596	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	aaggctggtgggtttttgatGaagaaggagctgaactactt	14	4	0	4			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	X	77373596	77373596	G	A	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.570	p.M190I	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	196	0	0	121	69	36.32	-	-	-	A	77373596	G	A	77373596	3	1	221	1	0	0	0	0	1	0	0	0	11864	1290	45	2	592	2	PGK1	23	77373596	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09		77373596	77896964	67	13777										
PCDH11X	0	genome.wustl.edu	37	chrX	91090834	91090834	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	agcattgcttttatgaagtgGaggttgccattttgccggat	12	6	0	1			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	X	91090834	91090834	G	C	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.331	p.E111Q	1.000	pfam_Cadherin_N,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	240	0	0	142	62	30.39	-	-	-	C	91090834	G	C	91090834	3	2	221	1	0	0	0	0	1	0	0	0	11581	1175	41	2	333	2	PCDH11X	23	91090834	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	13717238	91090834	64179726	68	13778										
ARMCX5	0	genome.wustl.edu	37	chrX	101858440	101858440	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	tatgttttaaaagtgttttcGtgtttgtctaaaaatcacgc	7	5	2	0			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	X	101858440	101858440	G	A	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	silent	c.1371	p.S457	0.001	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	407	0	0	336	230	40.64	-	-	-	A	101858440	G	A	101858440	2	1	221	1	0	0	0	0	0	0	0	1	966	1132	40	1		1	ARMCX5	23	101858440	Silent	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	10767606	101858440	53412120	69	13779										
RHOXF2	0	genome.wustl.edu	37	chrX	119292962	119292962	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	cgcttactgaagaggtcaaaGaggaggaagaggatgcacag	15	6	1	4			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	X	119292962	119292962	G	C	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	1	known	missense	c.121	p.E41Q	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	50	0	0	46	9	16.36	-	-	-	C	119292962	G	C	119292962	3	2	221	1	0	0	0	0	1	0	0	0	13432	943	33	2	1010	2	RHOXF2	23	119292962	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	17434522	119292962	35977598	70	13780										
GAB3	0	genome.wustl.edu	37	chrX	153925488	153925488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.380281690140845	27	1.37006475379095e-08	3.50980029585799	5.16911764705882	2.70384615384615	1	1	19	ggtccagaggaggtggccgtGctacaagacagtgtgcaaca	15	9	0	2			TCGA-A8-A09N-01A-11W-A019-09	TCGA-A8-A09N-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	304a2945-f134-45c7-9eaa-c6c9c2435552	03c46c7b-9609-47ca-8ae5-714ce4a77860	X	153925488	153925488	G	A	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.1346	p.S449L	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	108	0	0	98	47	32.41	-	-	-	A	153925488	G	A	153925488	3	1	221	1	0	0	0	0	1	0	0	0	6199	1333	46	4	433	4	GAB3	23	153925488	Missense_Mutation	SNP	G	TCGA-A8-A09N-01A-11W-A019-09	34632526	153925488	1345072	71	13781										
TAS1R1	0	genome.wustl.edu	37	chr1	6634970	6634970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgagaggatgcagtgcctcAtgcgccacctggcccaggcc	13	14	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	6634970	6634970	A	G	SNP	TAS1R1	ENST00000333172	human	ensembl	69_37n	1	known	missense	c.778	p.M260V	0.892	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662	16	0	0	20	16	44.44	-	-	-	G	6634970	A	G	6634970	3	3	222	1	0	0	0	0	1	0	0	0	15654	217	8	5	788	5	TAS1R1	1	6634970	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09		6634970	242615651	1	13782										
HECTD3	0	genome.wustl.edu	37	chr1	45472650	45472650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aatgatgccttctgcaataaAtttacactcccaccactggt	5	12	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	45472650	45472650	A	C	SNP	HECTD3	ENST00000372172	human	ensembl	69_37n	-1	known	missense	c.1594	p.F532V	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107	66	0	0	79	10	11.24	-	-	-	C	45472650	A	C	45472650	3	2	222	1	0	0	0	0	1	0	0	0	7092	101	4	5	1031	5	HECTD3	1	45472650	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	38837680	45472650	203777971	2	13783										
SPATA6	0	genome.wustl.edu	37	chr1	48764474	48764474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	catgctgttctcaaagatggGtcggtgggattttcccttat	11	8	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	48764474	48764474	G	T	SNP	SPATA6	ENST00000371847	human	ensembl	69_37n	-1	known	missense	c.1378	p.P460T	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122	393	0	0	263	109	29.3	-	-	-	T	48764474	G	T	48764474	3	4	222	1	0	0	0	0	1	0	0	0	15104	1261	44	4	92	4	SPATA6	1	48764474	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	3291824	48764474	200486147	3	13784										
C1orf168	0	genome.wustl.edu	37	chr1	57258333	57258333	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttggatgagaggggtttcccAttggccaaaatttgagttga	13	5	0	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	57258333	57258333	A	G	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	silent	c.153	p.N51	0.302	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	562	0	0	571	92	13.81	-	-	-	G	57258333	A	G	57258333	2	3	222	1	0	0	0	0	0	0	0	1	2031	214	8	5		5	C1orf168	1	57258333	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	8493859	57258333	191992288	4	13785										
CTH	0	genome.wustl.edu	37	chr1	70895527	70895527	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgtattctgcaacaaaataCatgaatggtaagatgcatac	7	6	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	70895527	70895527	C	G	SNP	CTH	ENST00000370938	human	ensembl	69_37n	1	known	nonsense	c.639	p.Y213*	1.000	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	-	no_errors	CTH	HGNC	ENSG00000116761	63	0	0	89	14	13.59	-	-	-	G	70895527	C	G	70895527	4	3	222	1	0	0	0	0	0	1	0	0	4041	489	17	4	661	4	CTH	1	70895527	Nonsense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	13637194	70895527	178355094	5	13786										
C1orf173	0	genome.wustl.edu	37	chr1	75038229	75038229	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttccttcgctctcttgctaaAtctaattccttgggtaaaat	5	10	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	75038229	75038229	A	G	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	silent	c.3165	p.D1055	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	672	0	0	534	70	11.59	-	-	-	G	75038229	A	G	75038229	2	3	222	1	0	0	0	0	0	0	0	1	2033	98	4	5		5	C1orf173	1	75038229	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	4142702	75038229	174212392	6	13787										
MSH4	0	genome.wustl.edu	37	chr1	76269499	76269499	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtgcaagctcatcttctgcaCgagatactaattatcctcaa	6	11	4	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	76269499	76269499	C	T	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	nonsense	c.328	p.R110*	0.012	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	311	0	0	186	101	35.19	-	-	-	T	76269499	C	T	76269499	4	4	222	1	0	0	0	0	0	1	0	0	9944	528	19	1	334	1	MSH4	1	76269499	Nonsense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	1231270	76269499	172981122	7	13788										
ZZZ3	0	genome.wustl.edu	37	chr1	78031328	78031328	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tgatgttctcttccatgtcaTctgtttgctggaaagtagtt	9	7	3	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	78031328	78031328	T	A	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	missense	c.2709	p.R903S	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	72	0	0	58	10	14.71	-	-	-	A	78031328	T	A	78031328	3	1	222	1	0	0	0	0	1	0	0	0	18347	1432	50	5	6	5	ZZZ3	1	78031328	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	1761829	78031328	171219293	8	13789										
ZNF644	0	genome.wustl.edu	37	chr1	91406699	91406699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gttcttcaggcagagtcaacGtattatttttctgaaatgat	8	6	4	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	91406699	91406699	G	A	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.212	p.T71M	0.964	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	181	0	0	135	62	31.47	-	-	-	A	91406699	G	A	91406699	3	1	222	1	0	0	0	0	1	0	0	0	18156	1145	40	1	3787	1	ZNF644	1	91406699	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	13375371	91406699	157843922	9	13790										
OVGP1	0	genome.wustl.edu	37	chr1	111957196	111957196	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atggtttccatagatgggaaCaaagcggttgtcaaaagcta	11	6	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	111957196	111957196	C	A	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.1927	p.V643F	0.000	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	346	0	0	319	51	13.78	-	-	-	A	111957196	C	A	111957196	3	1	222	1	0	0	0	0	1	0	0	0	11398	478	17	4	113	4	OVGP1	1	111957196	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	20550497	111957196	137293425	10	13791										
RSBN1	0	genome.wustl.edu	37	chr1	114308631	114308631	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agtggttgaatgttcttgcaGattgtgttgctggtcagagt	14	4	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	114308631	114308631	G	A	SNP	RSBN1	ENST00000261441	human	ensembl	69_37n	-1	known	silent	c.2380	p.L794	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019	76	0	0	117	24	17.02	-	-	-	A	114308631	G	A	114308631	2	1	222	1	0	0	0	0	0	0	0	1	13782	933	33	2		2	RSBN1	1	114308631	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	2351435	114308631	134941990	11	13792										
PIP5K1A	0	genome.wustl.edu	37	chr1	151215029	151215029	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctagttggagagactttgcaAatgctaactacaaggttggt	11	6	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	151215029	151215029	A	G	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	silent	c.1626	p.Q542	0.839	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	203	0	0	282	72	20.34	-	-	-	G	151215029	A	G	151215029	2	3	222	1	0	0	0	0	0	0	0	1	12013	11	1	5		5	PIP5K1A	1	151215029	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	36906398	151215029	98035592	12	13793										
LCE1A	0	genome.wustl.edu	37	chr1	152800092	152800092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tcctgctgcagtgtcagctcCggaggctgctgtggctccag	14	13	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	152800092	152800092	C	T	SNP	LCE1A	ENST00000335123	human	ensembl	69_37n	1	known	silent	c.144	p.S48	0.943	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844	104	0	0	140	22	13.58	-	-	-	T	152800092	C	T	152800092	2	4	222	1	0	0	0	0	0	0	0	1	8713	639	23	1		1	LCE1A	1	152800092	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	1585063	152800092	96450529	13	13794										
INSRR	0	genome.wustl.edu	37	chr1	156821130	156821130	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtttgaggttcttgaaaaagCccagggacacgagggcaaag	14	7	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	156821130	156821130	C	G	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.1181	p.G394A	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	135	0	0	202	92	31.29	-	-	-	G	156821130	C	G	156821130	3	3	222	1	0	0	0	0	1	0	0	0	7828	739	26	4	2783	4	INSRR	1	156821130	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	4021038	156821130	92429491	14	13795										
ADAMTS4	0	genome.wustl.edu	37	chr1	161168097	161168097	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tggcccaggtactgcactgtCagcccctcgacctgcacacc	9	18	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	161168097	161168097	C	T	SNP	ADAMTS4	ENST00000367996	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	1.000	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859	35	0	0	47	15	24.19	-	-	-	T	161168097	C	T	161168097	2	4	222	1	0	0	0	0	0	0	0	1	268	813	29	2		2	ADAMTS4	1	161168097	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	4346967	161168097	88082524	15	13796										
CFH	0	genome.wustl.edu	37	chr1	196706080	196706080	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agaaaattatctaattcaggAaggagaagaaattacatgca	8	4	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	196706080	196706080	A	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.2540	p.E847V	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	122	0	0	121	21	14.79	-	-	-	T	196706080	A	T	196706080	3	4	222	1	0	0	0	0	1	0	0	0	3312	246	9	5	2620	5	CFH	1	196706080	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	35537983	196706080	52544541	16	13797										
DYRK3	0	genome.wustl.edu	37	chr1	206821149	206821149	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gcctatattcatgtacctcgAgaccatctagcttatcgata	6	11	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	206821149	206821149	A	G	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	silent	c.606	p.R202	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	228	0	0	480	56	10.43	-	-	-	G	206821149	A	G	206821149	2	3	222	1	0	0	0	0	0	0	0	1	4892	291	11	5		5	DYRK3	1	206821149	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	10115069	206821149	42429472	17	13798										
HHAT	0	genome.wustl.edu	37	chr1	210796928	210796928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cgctgcccttgcttcttgttCcacctcgatgctgatcctgt	8	15	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	210796928	210796928	C	T	SNP	HHAT	ENST00000391905	human	ensembl	69_37n	1	known	missense	c.1304	p.S435F	0.998	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392	369	0	0	436	237	35.22	-	-	-	T	210796928	C	T	210796928	3	4	222	1	0	0	0	0	1	0	0	0	7140	855	30	2	1440	2	HHAT	1	210796928	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	3975779	210796928	38453693	18	13799										
PCNXL2	0	genome.wustl.edu	37	chr1	233120153	233120153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cgagagtgtccgccacagccTcagccagacatcggtcatga	11	14	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	233120153	233120153	T	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.6311	p.E2104G	0.007	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	36	0	0	38	33	46.48	-	-	-	C	233120153	T	C	233120153	3	2	222	1	0	0	0	0	1	0	0	0	11665	1551	54	5	106	5	PCNXL2	1	233120153	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	22323225	233120153	16130468	19	13800										
OR11L1	0	genome.wustl.edu	37	chr1	248005132	248005132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gacaaagagcagggcctgccAttcaagaaggttctggaatc	12	9	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	1	248005132	248005132	A	G	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.67	p.W23R	0.931	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	70	0	0	139	18	11.46	-	-	-	G	248005132	A	G	248005132	3	3	222	1	0	0	0	0	1	0	0	0	11003	217	8	5	905	5	OR11L1	1	248005132	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	14884979	248005132	1245489	20	13801										
APOB	0	genome.wustl.edu	37	chr2	21225768	21225768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gaattcttgagtaactcgtaCcaagccatcaaacacgttat	6	10	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	21225768	21225768	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.12526	p.V4176I	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	143	0	0	81	21	20.59	-	-	-	T	21225768	C	T	21225768	3	4	222	1	0	0	0	0	1	0	0	0	787	507	18	4	1169	4	APOB	2	21225768	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		21225768	221973605	21	13802										
MSH2	0	genome.wustl.edu	37	chr2	47672761	47672761	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gttctgacttctccaagtttCaggaaatgatagaaacaact	7	8	3	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	47672761	47672761	C	G	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	missense	c.1351	p.Q451E	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	81	0	0	133	19	12.5	-	-	-	G	47672761	C	G	47672761	3	3	222	1	0	0	0	0	1	0	0	0	9942	827	29	2	1381	2	MSH2	2	47672761	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	26446993	47672761	195526612	22	13803										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48807847	48807847	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	caatcttctcaaaagtcaaaGaattttcctctggagaatca	5	9	5	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	48807847	48807847	G	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.75	p.K25N	0.802	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	158	0	0	226	45	16.61	-	-	-	T	48807847	G	T	48807847	3	4	222	1	0	0	0	0	1	0	0	0	15408	933	33	2	77	2	STON1-GTF2A1L	2	48807847	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	1135086	48807847	194391526	23	13804										
STAMBP	0	genome.wustl.edu	37	chr2	74058086	74058086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgaagacattccaccccgtCggtacttccgctctggagtt	9	13	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	74058086	74058086	C	T	SNP	STAMBP	ENST00000339566	human	ensembl	69_37n	1	known	missense	c.103	p.R35W	0.942	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBP	HGNC	ENSG00000124356	62	0	0	86	18	17.31	-	-	-	T	74058086	C	T	74058086	3	4	222	1	0	0	0	0	1	0	0	0	15341	875	31	1	105	1	STAMBP	2	74058086	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	25250239	74058086	169141287	24	13805										
TUBA3D	0	genome.wustl.edu	37	chr2	132237643	132237643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gttgtgtggtttctctcaggCggatctgtgcacaggactgc	14	9	3	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	132237643	132237643	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	69_37n	1	known	missense	c.377	p.A126V	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	22	0	0	43	17	28.33	-	-	-	T	132237643	C	T	132237643	3	4	222	1	0	0	0	0	1	0	0	0	16844	782	27	1	391	1	TUBA3D	2	132237643	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	58179557	132237643	110961730	25	13806										
XIRP2	0	genome.wustl.edu	37	chr2	168074694	168074694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agatgatggaagaatcagaaAtgtgcgcagtgcctggtggt	15	5	1	4			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	168074694	168074694	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.742	p.M248V	0.834	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	197	0	0	161	31	16.15	-	-	-	G	168074694	A	G	168074694	3	3	222	1	0	0	0	0	1	0	0	0	17527	101	4	5	756	5	XIRP2	2	168074694	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	35837051	168074694	75124679	26	13807										
TTN	0	genome.wustl.edu	37	chr2	179481483	179481483	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	attgacatcaatttccccagAaattgttttcacacggtttt	5	9	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	179481483	179481483	A	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.40429	p.S13477T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	437	0	0	358	65	15.37	-	-	-	T	179481483	A	T	179481483	3	4	222	1	0	0	0	0	1	0	0	0	16832	246	9	5	59988	5	TTN	2	179481483	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	11406789	179481483	63717890	27	13808										
COL4A3	0	genome.wustl.edu	37	chr2	228121089	228121089	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gcaacaggggtttccctgggTtaatgggtgaagatggcatt	15	6	0	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	228121089	228121089	T	A	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	missense	c.964	p.L322I	0.886	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	113	0	0	77	27	25.96	-	-	-	A	228121089	T	A	228121089	3	1	222	1	0	0	0	0	1	0	0	0	3721	1722	60	5	1030	5	COL4A3	2	228121089	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	48639606	228121089	15078284	28	13809										
UGT1A6	0	genome.wustl.edu	37	chr2	234601870	234601870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tgaaagaatccaaatactacAcaagaaaaatctatccagtg	5	8	1	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	234601870	234601870	A	G	SNP	UGT1A6	ENST00000305139	human	ensembl	69_37n	1	known	missense	c.220	p.T74A	0.409	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165	229	0	0	186	26	12.26	-	-	-	G	234601870	A	G	234601870	3	3	222	1	0	0	0	0	1	0	0	0	17046	159	6	5	222	5	UGT1A6	2	234601870	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	6480781	234601870	8597503	29	13810										
TRPM8	0	genome.wustl.edu	37	chr2	234835246	234835246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgacactctggacagcaccCggaccctgtactccagcgcg	10	16	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	2	234835246	234835246	C	T	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.64	p.R22W	0.944	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	150	0	0	157	20	11.3	-	-	-	T	234835246	C	T	234835246	3	4	222	1	0	0	0	0	1	0	0	0	16688	643	23	1	66	1	TRPM8	2	234835246	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	233376	234835246	8364127	30	13811										
CBLB	0	genome.wustl.edu	37	chr3	105421144	105421144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttcaagaggcattggcgggtCtctggaaggcacgctttcca	13	10	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	3	105421144	105421144	C	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.1753	p.D585N	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	77	0	0	57	66	53.66	-	-	-	T	105421144	C	T	105421144	3	4	222	1	0	0	0	0	1	0	0	0	2726	913	32	2	1227	2	CBLB	3	105421144	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		105421144	92601286	31	13812										
EAF2	0	genome.wustl.edu	37	chr3	121573546	121573546	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttaaacagggttcaactccaCcagtaactgttttcaaaggt	7	9	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	3	121573546	121573546	C	G	SNP	EAF2	ENST00000273668	human	ensembl	69_37n	1	known	missense	c.214	p.P72A	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088	219	0	0	259	47	15.36	-	-	-	G	121573546	C	G	121573546	3	3	222	1	0	0	0	0	1	0	0	0	4911	507	18	4	224	4	EAF2	3	121573546	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	16152402	121573546	76448884	32	13813										
MYLK	0	genome.wustl.edu	37	chr3	123456283	123456283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gacccgttcaccaccaggcaCgtgtacactcccacgtcatc	7	18	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	3	123456283	123456283	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	silent	c.696	p.T232	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	217	1	0.46	283	98	25.72	-	-	-	T	123456283	C	T	123456283	2	4	222	1	0	0	0	0	0	0	0	1	10128	523	19	1		1	MYLK	3	123456283	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	1882737	123456283	74566147	33	13814										
DNAJC13	0	genome.wustl.edu	37	chr3	132218599	132218599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tgttacaagaggcatttagtCgctgtgtggctgtcttgact	12	7	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	3	132218599	132218599	C	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.4363	p.R1455C	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	298	0	0	343	85	19.86	-	-	-	T	132218599	C	T	132218599	3	4	222	1	0	0	0	0	1	0	0	0	4667	884	31	1	4509	1	DNAJC13	3	132218599	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	8762316	132218599	65803831	34	13815										
PIK3CA	0	genome.wustl.edu	37	chr3	178941946	178941946	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cagggctttctgtctcctctAaaccctgctcatcaactagg	7	14	5	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	3	178941946	178941946	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.2265	p.L755	0.890	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	106	0	0	168	36	17.65	-	-	-	G	178941946	A	G	178941946	2	3	222	1	0	0	0	0	0	0	0	1	11987	349	13	5		5	PIK3CA	3	178941946	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	46723347	178941946	19080484	35	13816										
BEND4	0	genome.wustl.edu	37	chr4	42145757	42145757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttgtagagagtcagtgaaaaCcctcaaaaaggcagaagttt	10	6	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	4	42145757	42145757	C	T	SNP	BEND4	ENST00000502486	human	ensembl	69_37n	-1	known	missense	c.742	p.V248I	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND4	HGNC	ENSG00000188848	39	0	0	48	13	20.97	-	-	-	T	42145757	C	T	42145757	3	4	222	1	0	0	0	0	1	0	0	0	1404	507	18	4	878	4	BEND4	4	42145757	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		42145757	149008519	36	13817										
GABRB1	0	genome.wustl.edu	37	chr4	47427898	47427898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tacccagcaaggggcgcatcCgcaggcgtgcctcccagctc	12	17	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	4	47427898	47427898	C	T	SNP	GABRB1	ENST00000295454	human	ensembl	69_37n	1	known	missense	c.1288	p.R430C	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	130	0	0	153	20	11.56	-	-	-	T	47427898	C	T	47427898	3	4	222	1	0	0	0	0	1	0	0	0	6215	652	23	1	1322	1	GABRB1	4	47427898	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	5282141	47427898	143726378	37	13818										
SLC4A4	0	genome.wustl.edu	37	chr4	72205191	72205191	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgagctgctggccgtggatGggcaggagatggagtggaag	20	5	0	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	4	72205191	72205191	G	T	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.358	p.G120W	1.000	superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	172	1	0.58	190	29	13.24	-	-	-	T	72205191	G	T	72205191	3	4	222	1	0	0	0	0	1	0	0	0	14745	1348	47	4	489	4	SLC4A4	4	72205191	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	24777293	72205191	118949085	38	13819										
MAD2L1	0	genome.wustl.edu	37	chr4	120983241	120983241	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtttctgaactgaacacttgTataaccaatctgcaacatat	5	9	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	4	120983241	120983241	T	A	SNP	MAD2L1	ENST00000296509	human	ensembl	69_37n	-1	known	missense	c.230	p.Y77F	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109	99	0	0	90	12	11.76	-	-	-	A	120983241	T	A	120983241	3	1	222	1	0	0	0	0	1	0	0	0	9215	1638	57	5	399	5	MAD2L1	4	120983241	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	48778050	120983241	70171035	39	13820										
TBC1D9	0	genome.wustl.edu	37	chr4	141543579	141543579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cgccgtgccctggccgctccGcaccaggaccgtgtcctctc	11	20	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	4	141543579	141543579	G	A	SNP	TBC1D9	ENST00000442267	human	ensembl	69_37n	-1	known	missense	c.3571	p.R1191W	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436	43	0	0	39	6	13.33	-	-	-	A	141543579	G	A	141543579	3	1	222	1	0	0	0	0	1	0	0	0	15722	1086	38	1	233	1	TBC1D9	4	141543579	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	20560338	141543579	49610697	40	13821										
KIAA0947	0	genome.wustl.edu	37	chr5	5462931	5462931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctctgcaagattttaacataAgtactttttctgagctggat	7	7	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	5462931	5462931	A	C	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.3484	p.S1162R	0.002	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	97	0	0	101	27	21.09	-	-	-	C	5462931	A	C	5462931	3	2	222	1	0	0	0	0	1	0	0	0	8254	72	3	5	3534	5	KIAA0947	5	5462931	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09		5462931	175452329	41	13822										
CDH12	0	genome.wustl.edu	37	chr5	21751992	21751992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agagctgagggactctgccaCggacccactcccttcgtagg	12	14	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	21751992	21751992	C	T	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.2239	p.V747M	0.748	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	266	0	0	205	118	36.42	-	-	-	T	21751992	C	T	21751992	3	4	222	1	0	0	0	0	1	0	0	0	3127	536	19	1	149	1	CDH12	5	21751992	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	16289061	21751992	159163268	42	13823										
SLC45A2	0	genome.wustl.edu	37	chr5	33984503	33984503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aggctgctgggcagacctacGctgagcaggactggggtcac	16	11	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	33984503	33984503	G	C	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.186	p.S62R	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	61	0	0	86	21	19.63	-	-	-	C	33984503	G	C	33984503	3	2	222	1	0	0	0	0	1	0	0	0	14730	1078	38	3	1449	3	SLC45A2	5	33984503	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	12232511	33984503	146930757	43	13824										
TSSK1B	0	genome.wustl.edu	37	chr5	112769486	112769486	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gggcccttcctctgtctccaTagtcgacggcttgctgggga	13	13	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	112769486	112769486	T	C	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	missense	c.1051	p.M351V	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	28	0	0	36	6	14.29	-	-	-	C	112769486	T	C	112769486	3	2	222	1	0	0	0	0	1	0	0	0	16764	1406	49	5	56	5	TSSK1B	5	112769486	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	78784983	112769486	68145774	44	13825										
TGFBI	0	genome.wustl.edu	37	chr5	135391372	135391372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtccctcttctgtgcagagcCtctgcattgagaacagctgc	10	13	3	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	135391372	135391372	C	T	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.1414	p.L472F	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	25	0	0	19	6	24	-	-	-	T	135391372	C	T	135391372	3	4	222	1	0	0	0	0	1	0	0	0	15915	681	24	4	1456	4	TGFBI	5	135391372	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	22621886	135391372	45523888	45	13826										
NUDCD2	0	genome.wustl.edu	37	chr5	162881017	162881017	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tggtccacctttagtgtagtTtcctgagatttctgctccac	8	11	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	5	162881017	162881017	T	A	SNP	NUDCD2	ENST00000302764	human	ensembl	69_37n	-1	known	missense	c.430	p.N144Y	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD2	HGNC	ENSG00000170584	188	0	0	169	60	26.2	-	-	-	A	162881017	T	A	162881017	3	1	222	1	0	0	0	0	1	0	0	0	10796	1841	64	5	47	5	NUDCD2	5	162881017	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	27489645	162881017	18034243	46	13827										
NEDD9	0	genome.wustl.edu	37	chr6	11191331	11191331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ggaatgtcataaaccccctcCggtctgaggtccggccttcc	10	15	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	11191331	11191331	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	silent	c.771	p.P257	0.001	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	41	0	0	86	24	21.82	-	-	-	T	11191331	C	T	11191331	2	4	222	1	0	0	0	0	0	0	0	1	10385	639	23	1		1	NEDD9	6	11191331	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		11191331	159923736	47	13828										
HIST1H2AE	0	genome.wustl.edu	37	chr6	26217305	26217305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttggccgtgtgcaccgcctcCtccgcaaaggcaactactcc	9	17	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	26217305	26217305	C	T	SNP	HIST1H2AE	ENST00000303910	human	ensembl	69_37n	1	known	missense	c.103	p.L35F	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274	72	0	0	54	48	47.06	-	-	-	T	26217305	C	T	26217305	3	4	222	1	0	0	0	0	1	0	0	0	7183	681	24	4	105	4	HIST1H2AE	6	26217305	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	15025974	26217305	144897762	48	13829										
AARS2	0	genome.wustl.edu	37	chr6	44274674	44274674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ccttaccagtgtctccaccaCtacaggtaccaggctgccta	7	16	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	44274674	44274674	C	G	SNP	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	missense	c.1135	p.V379L	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-synth_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	40	0	0	99	27	21.26	-	-	-	G	44274674	C	G	44274674	3	3	222	1	0	0	0	0	1	0	0	0	20	565	20	4	1886	4	AARS2	6	44274674	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	18057369	44274674	126840393	49	13830										
GRIK2	0	genome.wustl.edu	37	chr6	102337557	102337557	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cactggctattacctatgttCgagagaaggtcatcgacttt	9	9	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	102337557	102337557	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	nonsense	c.1567	p.R523*	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	194	0	0	191	31	13.96	-	-	-	T	102337557	C	T	102337557	4	4	222	1	0	0	0	0	0	1	0	0	6825	876	31	1	1609	1	GRIK2	6	102337557	Nonsense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	58062883	102337557	68777510	50	13831										
T	0	genome.wustl.edu	37	chr6	166580202	166580202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gacgcagctgggcgcctgcgGctccggcttgccccccggca	15	18	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	166580202	166580202	G	T	SNP	T	ENST00000296946	human	ensembl	69_37n	-1	known	missense	c.349	p.P117T	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_Brachyury,prints_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458	18	0	0	14	5	26.32	-	-	-	T	166580202	G	T	166580202	3	4	222	1	0	0	0	0	1	0	0	0	15580	1203	42	4	986	4	T	6	166580202	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	64242645	166580202	4534865	51	13832										
TCP10	0	genome.wustl.edu	37	chr6	167786750	167786750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cggcagtcatctgccttgccCtttggatgtcgtttttcttc	9	12	3	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	167786750	167786750	C	A	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.888	p.K296N	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	29	0	0	46	7	13.21	-	-	-	A	167786750	C	A	167786750	3	1	222	1	0	0	0	0	1	0	0	0	15805	680	24	4	96	4	TCP10	6	167786750	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	1206548	167786750	3328317	52	13833										
KIF25	0	genome.wustl.edu	37	chr6	168440805	168440805	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ggaggtctgcagctcagggcGaagcaccccaccctggtgca	14	14	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	6	168440805	168440805	G	A	SNP	KIF25	ENST00000354419	human	ensembl	69_37n	1	known	silent	c.555	p.A185	0.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337	11	0	0	21	5	19.23	-	-	-	A	168440805	G	A	168440805	2	1	222	1	0	0	0	0	0	0	0	1	8345	1045	37	1		1	KIF25	6	168440805	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	654055	168440805	2674262	53	13834										
MUC17	0	genome.wustl.edu	37	chr7	100678735	100678735	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	acaagtatacctgtcaacacCacactggtggccagttctgc	8	13	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	7	100678735	100678735	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.4038	p.T1346	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	520	0	0	444	55	11.02	-	-	-	G	100678735	C	G	100678735	2	3	222	1	0	0	0	0	0	0	0	1	10046	581	21	4		4	MUC17	7	100678735	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		100678735	58459928	54	13835										
FSCN3	0	genome.wustl.edu	37	chr7	127238597	127238597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tgcagtcctgcagggggcgcTtcctgggcattgcacccaac	13	14	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	7	127238597	127238597	T	C	SNP	FSCN3	ENST00000265825	human	ensembl	69_37n	1	known	missense	c.1069	p.F357L	0.979	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328	103	0	0	106	95	47.26	-	-	-	C	127238597	T	C	127238597	3	2	222	1	0	0	0	0	1	0	0	0	6118	1609	56	5	1083	5	FSCN3	7	127238597	Missense_Mutation	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	26559862	127238597	31900066	55	13836										
SLC13A4	0	genome.wustl.edu	37	chr7	135380224	135380224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	caaagttcaccacctctgcgGctggatactggctggagggt	13	11	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	7	135380224	135380224	G	T	SNP	SLC13A4	ENST00000354042	human	ensembl	69_37n	-1	known	missense	c.908	p.A303D	0.012	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	72	0	0	150	18	10.71	-	-	-	T	135380224	G	T	135380224	3	4	222	1	0	0	0	0	1	0	0	0	14483	1203	42	4	1004	4	SLC13A4	7	135380224	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	8141627	135380224	23758439	56	13837										
SLC18A1	0	genome.wustl.edu	37	chr8	20008221	20008221	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ccaaagaggttggtgccaatGaggtaggacacactggcagg	15	8	0	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	8	20008221	20008221	G	T	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	silent	c.1050	p.L350	0.982	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	215	0	0	110	45	29.03	-	-	-	T	20008221	G	T	20008221	2	4	222	1	0	0	0	0	0	0	0	1	14514	1277	45	2		2	SLC18A1	8	20008221	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		20008221	126355801	57	13838										
SLC18A1	0	genome.wustl.edu	37	chr8	20022582	20022582	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agccaccaggatgtaagggtCtttgagaagcataaagaggg	14	6	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	8	20022582	20022582	C	G	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	missense	c.895	p.D299H	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	94	0	0	44	19	30.16	-	-	-	G	20022582	C	G	20022582	3	3	222	1	0	0	0	0	1	0	0	0	14514	913	32	2	714	2	SLC18A1	8	20022582	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	14361	20022582	126341440	58	13839										
SORBS3	0	genome.wustl.edu	37	chr8	22428702	22428703	+	Frame_Shift_Ins	INS	-	-	C													0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ccgtcgcactggcttctcctINStccccacccaggagcctaga							TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	8	22428702	22428703	-	C	INS	SORBS3	ENST00000240123	human	ensembl	69_37n	1	known	frame_shift_ins	c.1711_1712	p.F571fs	0.181:0.014	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896	10	0	0	4	2	33.33	-	-	-	C	22428703	-	C	22428702	7	5	222	1	0	1	1	0	0	0	0	0	15018	1609	56	0	1777	0	SORBS3	8	22428702	Frame_Shift_Ins	INS	-	TCGA-A8-A09Q-01A-11W-A019-09	2406120	22428702	123935320	59	13840										
SDR16C5	0	genome.wustl.edu	37	chr8	57214113	57214113	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atagtcagctataagcagtcCtgtcttgaggggcaaaaagc	11	8	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	8	57214113	57214113	C	A	SNP	SDR16C5	ENST00000303749	human	ensembl	69_37n	-1	known	nonsense	c.856	p.G286*	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786	204	0	0	721	111	13.33	-	-	-	A	57214113	C	A	57214113	4	1	222	1	0	0	0	0	0	1	0	0	14059	690	24	4	77	4	SDR16C5	8	57214113	Nonsense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	34785411	57214113	89149909	60	13841										
PRDM14	0	genome.wustl.edu	37	chr8	70981496	70981496	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tacagaacgaagtgcaggtcCtcctccgtgaactggaaccg	11	12	0	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	8	70981496	70981496	C	T	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	silent	c.600	p.E200	0.993	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	14	0	0	27	8	22.86	-	-	-	T	70981496	C	T	70981496	2	4	222	1	0	0	0	0	0	0	0	1	12536	680	24	4		4	PRDM14	8	70981496	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	13767383	70981496	75382526	61	13842										
PTPRD	0	genome.wustl.edu	37	chr9	8471045	8471045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ccatggcttgataaatttccCgcgagatttcttcaaaggca	8	10	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	9	8471045	8471045	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.3454	p.G1152R	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	322	2	0.62	190	28	12.79	-	-	-	T	8471045	C	T	8471045	3	4	222	1	0	0	0	0	1	0	0	0	12882	652	23	1	2413	1	PTPRD	9	8471045	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		8471045	132742386	62	13843										
TLN1	0	genome.wustl.edu	37	chr9	35722177	35722177	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gggctagcttcacgtagcggAccttggcctcaatctcactc	10	14	3	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	9	35722177	35722177	A	G	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.887	p.V296A	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	82	0	0	163	46	22.01	-	-	-	G	35722177	A	G	35722177	3	3	222	1	0	0	0	0	1	0	0	0	16042	275	10	5	6934	5	TLN1	9	35722177	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	27251132	35722177	105491254	63	13844										
GRID1	0	genome.wustl.edu	37	chr10	87406826	87406826	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agggcatccacctaaagaacGtgtgcgatggatcgccttgc	12	11	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	10	87406826	87406826	G	A	SNP	GRID1	ENST00000474115	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID1	HGNC	ENSG00000182771	146	0	0	148	19	11.38	-	-	-	A	87406826	G	A	87406826	1	1	222	0	1	0	0	0	0	0	0	0	6822	1160	40	1		1	GRID1	10	87406826	RNA	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		87406826	48127921	64	13845										
LIPN	0	genome.wustl.edu	37	chr10	90521951	90521953	+	In_Frame_Del	DEL	ATC	ATC	-													0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tttttactgggcagagtgaaAtcatcatctacaatggctac							TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	10	90521951	90521953	ATC	-	DEL	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	in_frame_del	c.115_117	p.I41in_frame_del	0.996:1.000:0.999	pfam_AB_hydrolase_lipase	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	71	0	0	44	5	10.2	-	-	-	-	90521953	ATC	-	90521951	7	5	222	1	0	1	0	1	0	0	0	0	8884	101	4	0	121	0	LIPN	10	90521951	In_Frame_Del	DEL	ATC	TCGA-A8-A09Q-01A-11W-A019-09	3115125	90521951	45012796	65	13846										
MARCH5	0	genome.wustl.edu	37	chr10	94109244	94109244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	actatgtgcttagactgtggCgcaaatactcgaataaacta	8	8	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	10	94109244	94109244	C	T	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.508	p.R170C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	281	0	0	310	91	22.69	-	-	-	T	94109244	C	T	94109244	3	4	222	1	0	0	0	0	1	0	0	0	9375	768	27	1	522	1	MARCH5	10	94109244	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	3587293	94109244	41425503	66	13847										
LOXL4	0	genome.wustl.edu	37	chr10	100017455	100017455	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttgcacctgacagcagcatcAttctcatgttggcaaccatt	7	12	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	10	100017455	100017455	A	G	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	silent	c.1212	p.N404	0.733	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	40	0	0	33	7	17.5	-	-	-	G	100017455	A	G	100017455	2	3	222	1	0	0	0	0	0	0	0	1	8968	214	8	5		5	LOXL4	10	100017455	Silent	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	5908211	100017455	35517292	67	13848										
SBF2	0	genome.wustl.edu	37	chr11	9875162	9875162	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	acaaactttgtcaataaatcGggtaatgaaccgcacaacag	7	9	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	9875162	9875162	G	A	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	nonsense	c.2461	p.R821*	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	291	0	0	201	174	46.28	-	-	-	A	9875162	G	A	9875162	4	1	222	1	0	0	0	0	0	1	0	0	13946	1124	39	1	3172	1	SBF2	11	9875162	Nonsense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		9875162	125131354	68	13849										
NELL1	0	genome.wustl.edu	37	chr11	20699519	20699519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctgaccttcagatggatatcGtcaccgagcttgaccttgtg	10	11	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	20699519	20699519	G	A	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.97	p.V33I	0.660	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	118	0	0	133	48	26.52	-	-	-	A	20699519	G	A	20699519	3	1	222	1	0	0	0	0	1	0	0	0	10405	1145	40	1	103	1	NELL1	11	20699519	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	10824357	20699519	114306997	69	13850										
DPP3	0	genome.wustl.edu	37	chr11	66276589	66276589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ggaatacgaggcgtcagctgCtggcctcatccgatccttct	11	13	3	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	66276589	66276589	C	A	SNP	DPP3	ENST00000360510	human	ensembl	69_37n	1	known	missense	c.2081	p.A694D	0.996	pirsf_Pept_49_dipeptidyl-pept-3_euk	pirsf_Pept_49_dipeptidyl-pept-3_euk	-	no_errors	DPP3	HGNC	ENSG00000254986	63	0	0	66	18	21.43	-	-	-	A	66276589	C	A	66276589	3	1	222	1	0	0	0	0	1	0	0	0	4763	797	28	4	2147	4	DPP3	11	66276589	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	45577070	66276589	68729927	70	13851										
FAT3	0	genome.wustl.edu	37	chr11	92534068	92534068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agccatagatcccgatgatgGagcaaattcaaggattactt	9	8	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	92534068	92534068	G	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.7889	p.G2630A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	60	0	0	59	10	14.49	-	-	-	C	92534068	G	C	92534068	3	2	222	1	0	0	0	0	1	0	0	0	5737	1174	41	2	7923	2	FAT3	11	92534068	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	26257479	92534068	42472448	71	13852										
CCDC67	0	genome.wustl.edu	37	chr11	93104384	93104384	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agatagcactaagcaggaatAaattacaagatgaaaatcag	8	5	1	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	93104384	93104384	A	C	SNP	CCDC67	ENST00000298050	human	ensembl	69_37n	1	known	missense	c.727	p.K243Q	1.000	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	186	0	0	171	22	11.4	-	-	-	C	93104384	A	C	93104384	3	2	222	1	0	0	0	0	1	0	0	0	2866	363	13	5	749	5	CCDC67	11	93104384	Missense_Mutation	SNP	A	TCGA-A8-A09Q-01A-11W-A019-09	570316	93104384	41902132	72	13853										
AMOTL1	0	genome.wustl.edu	37	chr11	94599220	94599220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctccagcctacgtcctgcccGctccgttccatccatagcag	7	19	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	11	94599220	94599220	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.2375	p.R792H	1.000	pfam_Angiomotin_C	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	69	0	0	46	6	11.54	-	-	-	A	94599220	G	A	94599220	3	1	222	1	0	0	0	0	1	0	0	0	583	1087	38	1	2417	1	AMOTL1	11	94599220	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	1494836	94599220	40407296	73	13854										
KCNA1	0	genome.wustl.edu	37	chr12	5021107	5021107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cgtcatcttttgcctggagaCgctccccgagctgaaggatg	12	12	2	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	12	5021107	5021107	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.563	p.T188M	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	76	0	0	66	10	13.16	-	-	-	T	5021107	C	T	5021107	3	4	222	1	0	0	0	0	1	0	0	0	8055	536	19	1	565	1	KCNA1	12	5021107	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		5021107	128830788	74	13855										
BHLHE41	0	genome.wustl.edu	37	chr12	26276608	26276608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	atgctgttgctcggttaaggCggttaaagcttttaagtgtt	12	5	0	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	12	26276608	26276608	C	T	SNP	BHLHE41	ENST00000242728	human	ensembl	69_37n	-1	known	missense	c.301	p.A101T	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	BHLHE41	HGNC	ENSG00000123095	79	0	0	52	6	10.34	-	-	-	T	26276608	C	T	26276608	3	4	222	1	0	0	0	0	1	0	0	0	1429	768	27	1	1155	1	BHLHE41	12	26276608	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	21255501	26276608	107575287	75	13856										
KRT85	0	genome.wustl.edu	37	chr12	52760887	52760887	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aggggcgtgaggaggctctcGttgaccgacacggtagtgat	17	8	1	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	12	52760887	52760887	G	A	SNP	KRT85	ENST00000257901	human	ensembl	69_37n	-1	known	silent	c.303	p.N101	0.999	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443	44	0	0	25	30	54.55	-	-	-	A	52760887	G	A	52760887	2	1	222	1	0	0	0	0	0	0	0	1	8552	1136	40	1		1	KRT85	12	52760887	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	26484279	52760887	81091008	76	13857										
FAM124A	0	genome.wustl.edu	37	chr13	51826286	51826286	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aacccttgcagccccatcagCgaggggcgctggcagacgga	14	14	1	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	13	51826286	51826286	C	A	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	missense	c.891	p.S297R	0.833	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	19	0	0	11	14	56	-	-	-	A	51826286	C	A	51826286	3	1	222	1	0	0	0	0	1	0	0	0	5465	767	27	3	905	3	FAM124A	13	51826286	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		51826286	63343592	77	13858										
OR11H12	0	genome.wustl.edu	37	chr14	19377728	19377728	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cagatcttcctcttctcactCtttactacaacatatgcact	2	14	4	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	14	19377728	19377728	C	A	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	silent	c.135	p.L45	0.982	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	259	0	0	466	60	11.41	-	-	-	A	19377728	C	A	19377728	2	1	222	1	0	0	0	0	0	0	0	1	11000	900	32	2		2	OR11H12	14	19377728	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		19377728	87971812	78	13859										
OR11H12	0	genome.wustl.edu	37	chr14	19378227	19378227	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tttctgccccaagaatccaaCtgttttgctacactctaagc	5	13	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	14	19378227	19378227	C	T	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	silent	c.634	p.L212	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	243	0	0	353	58	14.11	-	-	-	T	19378227	C	T	19378227	2	4	222	1	0	0	0	0	0	0	0	1	11000	564	20	4		4	OR11H12	14	19378227	Silent	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	499	19378227	87971313	79	13860										
KTN1	0	genome.wustl.edu	37	chr14	56114796	56114796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ggaagaattacttgaaactgGacttattcaggtggcaacta	10	6	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	14	56114796	56114796	G	A	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.2261	p.G754E	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	125	0	0	67	11	14.1	-	-	-	A	56114796	G	A	56114796	3	1	222	1	0	0	0	0	1	0	0	0	8639	1174	41	2	2335	2	KTN1	14	56114796	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	36736569	56114796	51234744	80	13861										
PELI2	0	genome.wustl.edu	37	chr14	56763595	56763595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtaccacaactggggccatcGgagtgacacggaggccaacg	14	12	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	14	56763595	56763595	G	A	SNP	PELI2	ENST00000267460	human	ensembl	69_37n	1	known	missense	c.974	p.R325Q	1.000	pfam_Pellino	pfam_Pellino	-	no_errors	PELI2	HGNC	ENSG00000139946	106	0	0	44	37	45.68	-	-	-	A	56763595	G	A	56763595	3	1	222	1	0	0	0	0	1	0	0	0	11795	1116	39	1	996	1	PELI2	14	56763595	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	648799	56763595	50585945	81	13862										
MYH10	0	genome.wustl.edu	37	chr17	8417136	8417136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tcgccaccactgccagtgccGtaatttcaggtacgcggcac	10	15	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	17	8417136	8417136	G	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.2551	p.R851W	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	202	0	0	79	169	68.15	-	-	-	A	8417136	G	A	8417136	3	1	222	1	0	0	0	0	1	0	0	0	10102	1144	40	1	3530	1	MYH10	17	8417136	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		8417136	72778074	82	13863										
TTYH2	0	genome.wustl.edu	37	chr17	72249264	72249264	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tgatgatgacccctttaaccCccaagcctggcgcatggcgg	11	14	0	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	17	72249264	72249264	C	A	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	missense	c.1304	p.P435H	1.000	NULL	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	95	0	0	98	41	29.5	-	-	-	A	72249264	C	A	72249264	3	1	222	1	0	0	0	0	1	0	0	0	16837	623	22	4	1350	4	TTYH2	17	72249264	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	63832128	72249264	8945946	83	13864										
CCDC102B	0	genome.wustl.edu	37	chr18	66505946	66505946	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ttttgttttgtcttcaggaaCaaggtgtggttattgattct	10	4	3	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	18	66505946	66505946	C	A	SNP	CCDC102B	ENST00000319445	human	ensembl	69_37n	1	known	missense	c.610	p.Q204K	0.049	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636	131	0	0	79	21	20.79	-	-	-	A	66505946	C	A	66505946	3	1	222	1	0	0	0	0	1	0	0	0	2762	479	17	4	616	4	CCDC102B	18	66505946	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		66505946	11571302	84	13865										
CD37	0	genome.wustl.edu	37	chr19	49838991	49838991	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gtcctcggcagcctgatcttCtgcttcggcatctggatcct	10	14	3	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	19	49838991	49838991	C	A	SNP	CD37	ENST00000323906	human	ensembl	69_37n	1	known	missense	c.90	p.F30L	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD37	HGNC	ENSG00000104894	254	0	0	650	106	14.02	-	-	-	A	49838991	C	A	49838991	3	1	222	1	0	0	0	0	1	0	0	0	3037	912	32	2	96	2	CD37	19	49838991	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		49838991	9289992	85	13866										
PTPRT	0	genome.wustl.edu	37	chr20	40757458	40757458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ccagcaccagcagcctcaccCgggaatggtcgtctgcagag	12	15	2	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	20	40757458	40757458	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.2849	p.R950Q	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	89	0	0	68	23	25	-	-	-	T	40757458	C	T	40757458	3	4	222	1	0	0	0	0	1	0	0	0	12895	652	23	1	1594	1	PTPRT	20	40757458	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09		40757458	22268062	86	13867										
PI3	0	genome.wustl.edu	37	chr20	43804746	43804746	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aagaagtgctgtgaaggctcTtgcgggatggcctgtttcgt	15	7	1	2			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	20	43804746	43804746	T	C	SNP	PI3	ENST00000243924	human	ensembl	69_37n	1	known	silent	c.324	p.S108	0.009	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	pfam_Trappin_transglut-bd_rpt,pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	PI3	HGNC	ENSG00000124102	164	0	0	149	18	10.78	-	-	-	C	43804746	T	C	43804746	2	2	222	1	0	0	0	0	0	0	0	1	11944	1596	56	5		5	PI3	20	43804746	Silent	SNP	T	TCGA-A8-A09Q-01A-11W-A019-09	3047288	43804746	19220774	87	13868										
TPTE	0	genome.wustl.edu	37	chr21	10909699	10909699	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cttctagttggccctgcgaaGtgtgctgccctcctctctct	9	15	3	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	21	10909699	10909699	G	C	SNP	TPTE	ENST00000341326	human	ensembl	69_37n	-1	known	missense	c.919	p.L307V	0.014	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	-	no_start_codon	TPTE	HGNC	ENSG00000166157	292	0	0	251	142	36.13	-	-	-	C	10909699	G	C	10909699	3	2	222	1	0	0	0	0	1	0	0	0	16526	1044	36	4		4	TPTE	21	10909699	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		10909699	37220196	88	13869										
ARHGAP6	0	genome.wustl.edu	37	chrX	11196301	11196301	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agcaggcggtggagggtgtcGcagttgcagggaggtagaag	21	5	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	11196301	11196301	G	A	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	silent	c.1548	p.C516	0.965	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	80	0	0	27	28	50.91	-	-	-	A	11196301	G	A	11196301	2	1	222	1	0	0	0	0	0	0	0	1	889	1079	38	1		1	ARHGAP6	23	11196301	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09		11196301	144074259	89	13870										
TLR7	0	genome.wustl.edu	37	chrX	12904335	12904335	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctatatctctacaacaacatGattgcaaaaatccaagaaga	4	9	1	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	12904335	12904335	G	A	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.708	p.M236I	0.593	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	432	0	0	326	50	13.26	-	-	-	A	12904335	G	A	12904335	3	1	222	1	0	0	0	0	1	0	0	0	16051	1290	45	2	714	2	TLR7	23	12904335	Missense_Mutation	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	1708034	12904335	142366225	90	13871										
WAS	0	genome.wustl.edu	37	chrX	48542728	48542728	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	ctgccccctggagctgagcaCtggaccaaggagcattgtgg	14	12	0	1			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	48542728	48542728	C	G	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	missense	c.189	p.H63Q	0.992	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	22	0	0	20	42	67.74	-	-	-	G	48542728	C	G	48542728	3	3	222	1	0	0	0	0	1	0	0	0	17348	564	20	4	195	4	WAS	23	48542728	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	35638393	48542728	106727832	91	13872										
ALAS2	0	genome.wustl.edu	37	chrX	55041341	55041342	+	Frame_Shift_Ins	INS	-	-	G													0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	agagctccagagagcaccatINSggggggcagagaagtggtaa							TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	55041341	55041342	-	G	INS	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1276_1275	p.M425fs	1.000:0.967	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	23	0	0	16	2	11.11	-	-	-	G	55041342	-	G	55041341	7	5	222	1	0	1	1	0	0	0	0	0	485	1464	51	0	499	0	ALAS2	23	55041341	Frame_Shift_Ins	INS	-	TCGA-A8-A09Q-01A-11W-A019-09	6498613	55041341	100229219	92	13873										
DACH2	0	genome.wustl.edu	37	chrX	85769372	85769372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	gcagtcccaggcctcttatcGccaggacttatcactccgac	8	16	2	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	85769372	85769372	G	A	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	silent	c.618	p.S206	0.991	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	83	0	0	46	14	23.33	-	-	-	A	85769372	G	A	85769372	2	1	222	1	0	0	0	0	0	0	0	1	4253	1074	38	1		1	DACH2	23	85769372	Silent	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	30728031	85769372	69501188	93	13874										
ZCCHC18	0	genome.wustl.edu	37	chrX	103359682	103359682	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	cttcactgacacctacaggtGcccctcccttcagaggaaga	8	15	2	3			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	103359682	103359682	G	C	SNP	ZCCHC18	ENST00000537356	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZCCHC18	HGNC	ENSG00000166707	56	0	0	54	16	22.86	-	-	-	C	103359682	G	C	103359682	1	2	222	0	1	0	0	0	0	0	0	0	17682	1319	46	4		4	ZCCHC18	23	103359682	RNA	SNP	G	TCGA-A8-A09Q-01A-11W-A019-09	17590310	103359682	51910878	94	13875										
IL13RA2	0	genome.wustl.edu	37	chrX	114250277	114250277	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	tcggtattttagttcatattCcactgtgcattccttaaaat	5	8	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	114250277	114250277	C	G	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.202	p.E68Q	0.988	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	378	0	0	97	105	51.98	-	-	-	G	114250277	C	G	114250277	3	3	222	1	0	0	0	0	1	0	0	0	7684	864	30	2	972	2	IL13RA2	23	114250277	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	10890595	114250277	41020283	95	13876										
AFF2	0	genome.wustl.edu	37	chrX	148055076	148055076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	6	0.968002827953481	0.834405834405834	1.15533115533116	0.732649025331952	0.628482972136223	1	0	aatgtggcaatgccatggaaCgcgaccctctggaagcaaag	12	10	1	0			TCGA-A8-A09Q-01A-11W-A019-09	TCGA-A8-A09Q-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51a8ac83-bafa-4df7-a52d-a1e1fb45799d	c8f39b5b-9f03-44d5-99c4-23d0090e45d2	X	148055076	148055076	C	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.3343	p.R1115C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	166	0	0	68	69	50.36	-	-	-	T	148055076	C	T	148055076	3	4	222	1	0	0	0	0	1	0	0	0	357	536	19	1	3460	1	AFF2	23	148055076	Missense_Mutation	SNP	C	TCGA-A8-A09Q-01A-11W-A019-09	33804799	148055076	7215484	96	13877										
AIM1L	0	genome.wustl.edu	37	chr1	26664147	26664147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gctgcggccctgaaagcctgGggcctcatacaccacagcct	11	16	1	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	1	26664147	26664147	G	T	SNP	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	missense	c.904	p.P302T	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	44	0	0	16	12	42.86	-	-	-	T	26664147	G	T	26664147	3	4	223	1	0	0	0	0	1	0	0	0	431	1232	43	4	1507	4	AIM1L	1	26664147	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09		26664147	222586474	1	13878										
ZNF644	0	genome.wustl.edu	37	chr1	91403092	91403094	+	In_Frame_Del	DEL	TCC	TCC	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gctgatacatcaacggactaTcctcatttaatggaagaacg							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	1	91403092	91403094	TCC	-	DEL	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	in_frame_del	c.3638_3636	p.E1212in_frame_del	0.997:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	281	0	0	226	54	18.95	-	-	-	-	91403094	TCC	-	91403092	7	5	223	1	0	1	0	1	0	0	0	0	18156	1435	50	0	357	0	ZNF644	1	91403092	In_Frame_Del	DEL	TCC	TCGA-A8-A09R-01A-11W-A019-09	64738945	91403092	157847529	2	13879										
TGFBR3	0	genome.wustl.edu	37	chr1	92177900	92177900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	agacaggcttgaagacaaagCtgaatcgcttcttatccatg	9	9	1	4			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	1	92177900	92177900	C	T	SNP	TGFBR3	ENST00000212355	human	ensembl	69_37n	-1	known	missense	c.2066	p.S689N	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TGFBR3	HGNC	ENSG00000069702	113	0	0	66	16	19.51	-	-	-	T	92177900	C	T	92177900	3	4	223	1	0	0	0	0	1	0	0	0	15918	797	28	4	509	4	TGFBR3	1	92177900	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	774808	92177900	157072721	3	13880										
DARC	0	genome.wustl.edu	37	chr1	159175674	159175674	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	cccaggctttgctgctagggTgccatgcctccctgggccac	12	16	0	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	1	159175674	159175674	T	A	SNP	DARC	ENST00000368121	human	ensembl	69_37n	1	known	missense	c.451	p.C151S	0.000	NULL	prints_Duffy_chemokine_rcpt	-	no_errors	DARC	HGNC	ENSG00000213088	61	0	0	58	10	14.71	-	-	-	A	159175674	T	A	159175674	3	1	223	1	0	0	0	0	1	0	0	0	4272	1696	59	5	478	5	DARC	1	159175674	Missense_Mutation	SNP	T	TCGA-A8-A09R-01A-11W-A019-09	66997774	159175674	90074947	4	13881										
IARS2	0	genome.wustl.edu	37	chr1	220307827	220307827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	catccttattaacaagtgtgGcagcaaggaagagagcacct	10	9	0	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	1	220307827	220307827	G	T	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	missense	c.1921	p.A641S	1.000	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	74	0	0	97	45	31.69	-	-	-	T	220307827	G	T	220307827	3	4	223	1	0	0	0	0	1	0	0	0	7528	1203	42	4	1979	4	IARS2	1	220307827	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	61132153	220307827	28942794	5	13882										
SMYD1	0	genome.wustl.edu	37	chr2	88396144	88396146	+	In_Frame_Del	DEL	AGA	AGA	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	cgggccctaggcaagatctcAgaaggagaggagctgactgt							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	2	88396144	88396146	AGA	-	DEL	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	in_frame_del	c.729_731	p.E244in_frame_del	0.820:0.978:0.976	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	255	0	0	190	35	15.49	-	-	-	-	88396146	AGA	-	88396144	7	5	223	1	0	1	0	1	0	0	0	0	14910	175	7	0	751	0	SMYD1	2	88396144	In_Frame_Del	DEL	AGA	TCGA-A8-A09R-01A-11W-A019-09		88396144	154803229	6	13883										
SP100	0	genome.wustl.edu	37	chr2	231379957	231379957	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	acaaggcccattatgaaagaGaaatgaaaacctatatccct	6	9	0	3			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	2	231379957	231379957	G	C	SNP	SP100	ENST00000264052	human	ensembl	69_37n	1	known	missense	c.2242	p.E748Q	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Sp100,pfam_SAND_dom,pfam_HMG_superfamily,superfamily_SAND_dom-like,superfamily_HMG_superfamily,smart_SAND_dom,smart_HMG_superfamily,pfscan_SAND_dom,pfscan_HMG_superfamily	-	no_errors	SP100	HGNC	ENSG00000067066	225	0	0	271	51	15.84	-	-	-	C	231379957	G	C	231379957	3	2	223	1	0	0	0	0	1	0	0	0	15049	943	33	2	2340	2	SP100	2	231379957	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	142983813	231379957	11819416	7	13884										
MAD2L1	0	genome.wustl.edu	37	chr4	120981377	120981377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	agaattggtaataaactgtgGtcccgactcttcccattttt	7	9	1	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	4	120981377	120981377	G	T	SNP	MAD2L1	ENST00000296509	human	ensembl	69_37n	-1	known	missense	c.514	p.P172T	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109	108	0	0	56	30	34.88	-	-	-	T	120981377	G	T	120981377	3	4	223	1	0	0	0	0	1	0	0	0	9215	1261	44	4	107	4	MAD2L1	4	120981377	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09		120981377	70172899	8	13885										
TCF7	0	genome.wustl.edu	37	chr5	133477961	133477961	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	cggccattgtgcccccctcaGggaagcaggagctgcagccc	13	16	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	5	133477961	133477961	G	T	SNP	TCF7	ENST00000321584	human	ensembl	69_37n	1	known	missense	c.721	p.G241W	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7	HGNC	ENSG00000081059	110	0	0	63	38	37.62	-	-	-	T	133477961	G	T	133477961	3	4	223	1	0	0	0	0	1	0	0	0	15791	1000	35	4	743	4	TCF7	5	133477961	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09		133477961	47437299	9	13886										
SGCD	0	genome.wustl.edu	37	chr5	156186373	156186373	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ggcaggagctgggtccacttGtcagataaacacaagtgtct	12	9	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	5	156186373	156186373	G	T	SNP	SGCD	ENST00000337851	human	ensembl	69_37n	1	known	missense	c.845	p.C282F	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	216	0	0	132	60	31.09	-	-	-	T	156186373	G	T	156186373	3	4	223	1	0	0	0	0	1	0	0	0	14289	1377	48	4	947	4	SGCD	5	156186373	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	22708412	156186373	24728887	10	13887										
SERPINB1	0	genome.wustl.edu	37	chr6	2833961	2833961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	catcaacatgcagaaagttgCgatgcctgctgtggcagctg	12	10	1	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	6	2833961	2833961	C	T	SNP	SERPINB1	ENST00000380739	human	ensembl	69_37n	-1	known	missense	c.1021	p.A341T	0.016	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB1	HGNC	ENSG00000021355	101	0	0	101	19	15.83	-	-	-	T	2833961	C	T	2833961	3	4	223	1	0	0	0	0	1	0	0	0	14184	768	27	1	122	1	SERPINB1	6	2833961	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		2833961	168281106	11	13888										
DSP	0	genome.wustl.edu	37	chr6	7585725	7585725	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ttgacccggaagtgcatgggAggataagcaccgaagaagcc	14	9	0	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	6	7585725	7585725	A	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.8230	p.R2744W	0.989	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	179	0	0	103	26	20	-	-	-	T	7585725	A	T	7585725	3	4	223	1	0	0	0	0	1	0	0	0	4816	295	11	5	8324	5	DSP	6	7585725	Missense_Mutation	SNP	A	TCGA-A8-A09R-01A-11W-A019-09	4751764	7585725	163529342	12	13889										
BTN3A3	0	genome.wustl.edu	37	chr6	26452000	26452000	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gaagagccgcgggatctgccAgacaaccctgagagatttga	13	10	1	5			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	6	26452000	26452000	A	G	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	silent	c.1116	p.P372	0.056	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	188	0	0	99	31	23.85	-	-	-	G	26452000	A	G	26452000	2	3	223	1	0	0	0	0	0	0	0	1	1573	175	7	5		5	BTN3A3	6	26452000	Silent	SNP	A	TCGA-A8-A09R-01A-11W-A019-09	18866275	26452000	144663067	13	13890										
MAN1A1	0	genome.wustl.edu	37	chr6	119569483	119569483	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	agtatgaaatgcaggtagcaAttttaccccaagttccactg	8	9	0	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	6	119569483	119569483	A	G	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	silent	c.934	p.L312	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	181	0	0	111	57	33.73	-	-	-	G	119569483	A	G	119569483	2	3	223	1	0	0	0	0	0	0	0	1	9281	98	4	5		5	MAN1A1	6	119569483	Silent	SNP	A	TCGA-A8-A09R-01A-11W-A019-09	93117483	119569483	51545584	14	13891										
DOCK4	0	genome.wustl.edu	37	chr7	111535769	111535769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	caacttcttctctcctttctCctttgctgtaaaaaacaaat	2	12	3	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	7	111535769	111535769	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.1486	p.E496K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	1055	1	0.09	928	206	18.12	-	-	-	T	111535769	C	T	111535769	3	4	223	1	0	0	0	0	1	0	0	0	4724	864	30	2	4562	2	DOCK4	7	111535769	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		111535769	47602894	15	13892										
SND1	0	genome.wustl.edu	37	chr7	127326706	127326706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tcattgtccgaggtcagcctCgtggtgggcctcctcctgag	13	13	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	7	127326706	127326706	C	T	SNP	SND1	ENST00000354725	human	ensembl	69_37n	1	known	missense	c.118	p.R40C	1.000	superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Staphylococcal_nuclease	pfam_Staphylococcal_nuclease,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococcal_nuclease	-	no_errors	SND1	HGNC	ENSG00000197157	151	0	0	128	28	17.83	-	-	-	T	127326706	C	T	127326706	3	4	223	1	0	0	0	0	1	0	0	0	14933	884	31	1	124	1	SND1	7	127326706	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	15790937	127326706	31811957	16	13893										
NUB1	0	genome.wustl.edu	37	chr7	151064964	151064964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tagggaaattgtgggaaagaGaaggtactgtttctaagact	13	3	1	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	7	151064964	151064964	G	C	SNP	NUB1	ENST00000568733	human	ensembl	69_37n	1	known	missense	c.1077	p.E359D	1.000	NULL	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374	26	0	0	15	5	25	-	-	-	C	151064964	G	C	151064964	3	2	223	1	0	0	0	0	1	0	0	0	10787	933	33	2	1039	2	NUB1	7	151064964	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	23738258	151064964	8073699	17	13894										
TEX15	0	genome.wustl.edu	37	chr8	30705950	30705950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gcgagtcctgaaaaatgtgaCtactgtactcttttgtataa	8	7	1	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	8	30705950	30705950	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.584	p.S195T	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	93	0	0	102	17	14.29	-	-	-	G	30705950	C	G	30705950	3	3	223	1	0	0	0	0	1	0	0	0	15874	565	20	4	7801	4	TEX15	8	30705950	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		30705950	115658072	18	13895										
JPH1	0	genome.wustl.edu	37	chr8	75227343	75227343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	atacttcatgccattggagcGctcgctaacgccgaagccgt	10	13	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	8	75227343	75227343	G	A	SNP	JPH1	ENST00000342232	human	ensembl	69_37n	-1	known	missense	c.892	p.R298C	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369	100	0	0	40	15	27.27	-	-	-	A	75227343	G	A	75227343	3	1	223	1	0	0	0	0	1	0	0	0	8014	1087	38	1	1109	1	JPH1	8	75227343	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	44521393	75227343	71136679	19	13896										
CNTLN	0	genome.wustl.edu	37	chr9	17332708	17332708	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	aaagaaagattgaaaacttaGagaaggcactacaactaaag	8	5	0	4			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	9	17332708	17332708	G	C	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.1624	p.E542Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	136	0	0	123	15	10.87	-	-	-	C	17332708	G	C	17332708	3	2	223	1	0	0	0	0	1	0	0	0	3669	943	33	2	1692	2	CNTLN	9	17332708	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09		17332708	123880723	20	13897										
RUSC2	0	genome.wustl.edu	37	chr9	35546754	35546754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tactccaggaggaactgcacGgtctatagacagcaccaaga	10	11	1	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	9	35546754	35546754	G	T	SNP	RUSC2	ENST00000361226	human	ensembl	69_37n	1	known	missense	c.236	p.R79L	0.033	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853	75	0	0	28	27	49.09	-	-	-	T	35546754	G	T	35546754	3	4	223	1	0	0	0	0	1	0	0	0	13837	1116	39	3	238	3	RUSC2	9	35546754	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	18214046	35546754	105666677	21	13898										
C9orf156	0	genome.wustl.edu	37	chr9	100675677	100675677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gtaaaagtagaaatgaaatgGgttaccttctaccttttcca	7	7	1	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	9	100675677	100675677	G	C	SNP	C9orf156	ENST00000455506	human	ensembl	69_37n	-1	known	missense	c.409	p.P137A	0.000	pfam_UPF0066,superfamily_UPF0066_YaeB	pfam_UPF0066,superfamily_UPF0066_YaeB	-	no_start_codon	C9orf156	HGNC	ENSG00000136932	91	0	0	70	43	38.05	-	-	-	C	100675677	G	C	100675677	3	2	223	1	0	0	0	0	1	0	0	0	2490	1247	43	4		4	C9orf156	9	100675677	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	65128923	100675677	40537754	22	13899										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	122	0	0	63	13	17.11	-	-	-	G	8115875	-	G	8115874	7	5	223	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-A8-A09R-01A-11W-A019-09		8115874	127418873	23	13900										
TRIM68	0	genome.wustl.edu	37	chr11	4621685	4621685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gtcatgggcctcataatccaCgaagattcccacccggcgag	10	14	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	11	4621685	4621685	C	T	SNP	TRIM68	ENST00000300747	human	ensembl	69_37n	-1	known	missense	c.1279	p.V427M	0.999	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM68	HGNC	ENSG00000167333	103	0	0	40	31	43.66	-	-	-	T	4621685	C	T	4621685	3	4	223	1	0	0	0	0	1	0	0	0	16637	536	19	1	182	1	TRIM68	11	4621685	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		4621685	130384831	24	13901										
GLYAT	0	genome.wustl.edu	37	chr11	58477428	58477428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ccatggagccggtattccggCaaggtgcctgccattctcat	11	13	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	11	58477428	58477428	C	A	SNP	GLYAT	ENST00000344743	human	ensembl	69_37n	-1	known	missense	c.702	p.L234F	0.538	pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124	111	1	0.89	85	26	23.42	-	-	-	A	58477428	C	A	58477428	3	1	223	1	0	0	0	0	1	0	0	0	6531	709	25	4	192	4	GLYAT	11	58477428	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	53855743	58477428	76529088	25	13902										
KRT78	0	genome.wustl.edu	37	chr12	53242469	53242470	+	Frame_Shift_Ins	INS	-	-	C													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tgatggtcacttcttggatgINSccccccggagggcacaggga							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	12	53242469	53242470	-	C	INS	KRT78	ENST00000304620	human	ensembl	69_37n	-1	known	frame_shift_ins	c.246_245	p.I83fs	1.000:1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423	42	0	0	25	3	10.71	-	-	-	C	53242470	-	C	53242469	7	5	223	1	0	1	1	0	0	0	0	0	8544	1306	46	0	1352	0	KRT78	12	53242469	Frame_Shift_Ins	INS	-	TCGA-A8-A09R-01A-11W-A019-09		53242469	80609426	26	13903										
PPFIA2	0	genome.wustl.edu	37	chr12	81851615	81851615	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tagaagttgttccctgcaggCatttaattcttttgtcagtg	9	7	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	12	81851615	81851615	C	A	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.334	p.A112S	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	71	0	0	65	10	13.33	-	-	-	A	81851615	C	A	81851615	3	1	223	1	0	0	0	0	1	0	0	0	12383	710	25	4	3551	4	PPFIA2	12	81851615	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	28609146	81851615	52000280	27	13904										
TBX3	0	genome.wustl.edu	37	chr12	115118832	115118832	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	cggccttaccagccaccatcCaccgagaattgtgaaattta	7	13	0	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	12	115118832	115118832	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	nonsense	c.509	p.W170*	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	217	0	0	86	29	25	-	-	-	T	115118832	C	T	115118832	4	4	223	1	0	0	0	0	0	1	0	0	15754	595	21	4	1750	4	TBX3	12	115118832	Nonsense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	33267217	115118832	18733063	28	13905										
CIT	0	genome.wustl.edu	37	chr12	120156521	120156521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	taccttcctcccgggcggacCggagctcgatgcgggtcttc	13	15	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	12	120156521	120156521	C	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.3860	p.R1287Q	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	122	0	0	88	17	15.89	-	-	-	T	120156521	C	T	120156521	3	4	223	1	0	0	0	0	1	0	0	0	3468	652	23	1	2295	1	CIT	12	120156521	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	5037689	120156521	13695374	29	13906										
COL4A1	0	genome.wustl.edu	37	chr13	110839539	110839539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ccatctcttccaggagaaccCgctctccctgtcatgccggg	9	17	3	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	13	110839539	110839539	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	silent	c.1674	p.A558	0.939	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	64	0	0	47	12	20.34	-	-	-	T	110839539	C	T	110839539	2	4	223	1	0	0	0	0	0	0	0	1	3719	639	23	1		1	COL4A1	13	110839539	Silent	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		110839539	4330339	30	13907										
SYNE2	0	genome.wustl.edu	37	chr14	64516385	64516386	+	Frame_Shift_Del	DEL	AG	AG	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	attaagccactggaacaaacAgaatgtcttaacaaaacaga							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	14	64516385	64516386	AG	-	DEL	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	frame_shift_del	c.7434_7435	p.E2479fs	0.000:0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	133	0	0	239	57	19.19	-	-	-	-	64516386	AG	-	64516385	7	5	223	1	0	1	0	1	0	0	0	0	15538	175	7	0	7616	0	SYNE2	14	64516385	Frame_Shift_Del	DEL	AG	TCGA-A8-A09R-01A-11W-A019-09		64516385	42833155	31	13908										
SIPA1L1	0	genome.wustl.edu	37	chr14	72171448	72171448	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ttgtgctcagcttacagttaTagaggacctcaggatttcaa	9	8	3	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	14	72171448	72171448	T	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.3657	p.Y1219	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	65	0	0	25	36	59.02	-	-	-	C	72171448	T	C	72171448	2	2	223	1	0	0	0	0	0	0	0	1	14418	1413	49	5		5	SIPA1L1	14	72171448	Silent	SNP	T	TCGA-A8-A09R-01A-11W-A019-09	7655063	72171448	35178092	32	13909										
RYR3	0	genome.wustl.edu	37	chr15	34115275	34115275	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gtcttatgcagtcttgcaggTaaatgcgggaaaactaccat	10	8	2	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	15	34115275	34115275	T	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	splice_site	c.11072+2	e81+2	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838	59	0	0	41	33	44.59	-	-	-	G	34115275	T	G	34115275	5	3	223	1	0	0	0	0	0	0	1	0	13856	1652	57	5	11396	5	RYR3	15	34115275	Splice_Site	SNP	T	TCGA-A8-A09R-01A-11W-A019-09		34115275	68416117	33	13910										
ACAN	0	genome.wustl.edu	37	chr15	89401208	89401208	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gggtccctgatctcagtgggCagccttcagggttaccaggg	15	11	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	15	89401208	89401208	C	A	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	missense	c.5392	p.Q1798K	0.960	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	45	0	0	41	6	12.77	-	-	-	A	89401208	C	A	89401208	3	1	223	1	0	0	0	0	1	0	0	0	117	711	25	4	5434	4	ACAN	15	89401208	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	55285933	89401208	13130184	34	13911										
MYH11	0	genome.wustl.edu	37	chr16	15797924	15797924	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	cagaaccatctgcattttcaAtaactctacgtcctccagac	4	14	3	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	16	15797924	15797924	A	G	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.5864	p.I1955T	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	137	0	0	134	47	25.68	-	-	-	G	15797924	A	G	15797924	3	3	223	1	0	0	0	0	1	0	0	0	10103	101	4	5	79	5	MYH11	16	15797924	Missense_Mutation	SNP	A	TCGA-A8-A09R-01A-11W-A019-09		15797924	74556829	35	13912										
SMG1	0	genome.wustl.edu	37	chr16	18847853	18847853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tagttgggtgtgctcagaatAcctaatcagggggacacaaa	12	7	2	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	16	18847853	18847853	A	G	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.7606	p.Y2536H	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	298	0	0	268	66	19.76	-	-	-	G	18847853	A	G	18847853	3	3	223	1	0	0	0	0	1	0	0	0	14884	405	14	5	3447	5	SMG1	16	18847853	Missense_Mutation	SNP	A	TCGA-A8-A09R-01A-11W-A019-09	3049929	18847853	71506900	36	13913										
ZFHX3	0	genome.wustl.edu	37	chr16	72830233	72830233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ggctccacaggtcccagctgCgggggtagctgagccggcaa	16	13	0	1			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	16	72830233	72830233	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.6348	p.P2116	0.830	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	56	0	0	19	6	24	-	-	-	T	72830233	C	T	72830233	2	4	223	1	0	0	0	0	0	0	0	1	17730	755	27	1		1	ZFHX3	16	72830233	Silent	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	53982380	72830233	17524520	37	13914										
KLHL36	0	genome.wustl.edu	37	chr16	84695234	84695235	+	Frame_Shift_Ins	INS	-	-	G													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	aaagacttcgtgtacatctcINSggggggccacgactaccaaa							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	16	84695234	84695235	-	G	INS	KLHL36	ENST00000564996	human	ensembl	69_37n	1	known	frame_shift_ins	c.1346_1347	p.H452fs	1.000:0.299	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686	20	0	0	4	2	33.33	-	-	-	G	84695235	-	G	84695234	7	5	223	1	0	1	1	0	0	0	0	0	8442	893	31	0	1360	0	KLHL36	16	84695234	Frame_Shift_Ins	INS	-	TCGA-A8-A09R-01A-11W-A019-09	11865001	84695234	5659519	38	13915										
OR4D2	0	genome.wustl.edu	37	chr17	56247170	56247170	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tcatcatcacagtgacctctGattcccagctccacacaccc	4	18	4	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	17	56247170	56247170	G	T	SNP	OR4D2	ENST00000545221	human	ensembl	69_37n	1	known	missense	c.154	p.D52Y	0.604	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713	713	0	0	662	217	24.63	-	-	-	T	56247170	G	T	56247170	3	4	223	1	0	0	0	0	1	0	0	0	11129	1290	45	2	156	2	OR4D2	17	56247170	Missense_Mutation	SNP	G	TCGA-A8-A09R-01A-11W-A019-09		56247170	24948040	39	13916										
KCNJ2	0	genome.wustl.edu	37	chr17	68172397	68172397	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tacggacacgccccctgacaTagaccttcacaaccaggcaa	7	16	1	2			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	17	68172397	68172397	T	C	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.1217	p.I406T	0.656	prints_K_chnl_inward-rec_Kir2.1	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	276	0	0	247	49	16.55	-	-	-	C	68172397	T	C	68172397	3	2	223	1	0	0	0	0	1	0	0	0	8105	1406	49	5	1219	5	KCNJ2	17	68172397	Missense_Mutation	SNP	T	TCGA-A8-A09R-01A-11W-A019-09	11925227	68172397	13022813	40	13917										
SH3GL1	0	genome.wustl.edu	37	chr19	4363740	4363741	+	Frame_Shift_Ins	INS	-	-	G													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gtctccaggaggttgtgcatINSgctggtttctgccacctcct							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	19	4363740	4363741	-	G	INS	SH3GL1	ENST00000269886	human	ensembl	69_37n	-1	known	frame_shift_ins	c.601_600	p.M200fs	1.000:1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,prints_SH3_domain,prints_p67phox,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GL1	HGNC	ENSG00000141985	38	0	0	42	61	59.22	-	-	-	G	4363741	-	G	4363740	7	5	223	1	0	1	1	0	0	0	0	0	14339	1464	51	0	525	0	SH3GL1	19	4363740	Frame_Shift_Ins	INS	-	TCGA-A8-A09R-01A-11W-A019-09		4363740	54765243	41	13918										
SH3GL1	0	genome.wustl.edu	37	chr19	4364180	4364181	+	Frame_Shift_Del	DEL	GG	GG	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ggagtccttcacctctgccaGgcgcttcatggactcgccgg							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	19	4364180	4364181	GG	-	DEL	SH3GL1	ENST00000269886	human	ensembl	69_37n	-1	known	frame_shift_del	c.370_369	p.L124fs	0.999:1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,prints_SH3_domain,prints_p67phox,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GL1	HGNC	ENSG00000141985	11	0	0	5	19	79.17	-	-	-	-	4364181	GG	-	4364180	7	5	223	1	0	1	0	1	0	0	0	0	14339	991	35	0	760	0	SH3GL1	19	4364180	Frame_Shift_Del	DEL	GG	TCGA-A8-A09R-01A-11W-A019-09	440	4364180	54764803	42	13919	159	2								
SH3GL1	0	genome.wustl.edu	37	chr19	4364183	4364183	+	Frame_Shift_Del	DEL	G	G	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gtccttcacctctgccaggcGcttcatggactcgccggcat							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	19	4364183	4364183	G	-	DEL	SH3GL1	ENST00000269886	human	ensembl	69_37n	-1	known	frame_shift_del	c.367	p.R123fs	1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,prints_SH3_domain,prints_p67phox,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GL1	HGNC	ENSG00000141985	11	0	0	4	19	82.61	-	-	-	-	4364183	G	-	4364183	7	5	223	1	0	1	0	1	0	0	0	0	14339	1087	38	0	763	0	SH3GL1	19	4364183	Frame_Shift_Del	DEL	G	TCGA-A8-A09R-01A-11W-A019-09	3	4364183	54764800	43	13920	159	2								
RYR1	0	genome.wustl.edu	37	chr19	38976764	38976764	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	gaggcggtgcgcgacggtggGcagcacgctcgcgaccccgt	18	14	0	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	19	38976764	38976764	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.5469	p.G1823	0.979	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	115	0	0	79	21	21	-	-	-	A	38976764	G	A	38976764	2	1	223	1	0	0	0	0	0	0	0	1	13854	1190	42	4		4	RYR1	19	38976764	Silent	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	34612581	38976764	20152219	44	13921										
RPRD1B	0	genome.wustl.edu	37	chr20	36662443	36662443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ccctgtccctttggctcatcCaccaccgcaagcacgcggga	9	18	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	20	36662443	36662443	C	T	SNP	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	missense	c.94	p.H32Y	1.000	superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	84	0	0	66	17	20.48	-	-	-	T	36662443	C	T	36662443	3	4	223	1	0	0	0	0	1	0	0	0	13702	594	21	4	96	4	RPRD1B	20	36662443	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09		36662443	26363077	45	13922										
STAU1	0	genome.wustl.edu	37	chr20	47734496	47734496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ggccttggcaggattcggagCtgccctggtaaaatctttgg	14	9	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	20	47734496	47734496	C	T	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.1327	p.A443T	1.000	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	171	0	0	113	58	33.92	-	-	-	T	47734496	C	T	47734496	3	4	223	1	0	0	0	0	1	0	0	0	15363	797	28	4	422	4	STAU1	20	47734496	Missense_Mutation	SNP	C	TCGA-A8-A09R-01A-11W-A019-09	11072053	47734496	15291024	46	13923										
NFATC2	0	genome.wustl.edu	37	chr20	50140351	50140351	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ctcgggctggcggccaccccGgccaggggcggctgctccac	16	18	0	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	20	50140351	50140351	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	silent	c.429	p.A143	0.200	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	17	0	0	14	6	30	-	-	-	A	50140351	G	A	50140351	2	1	223	1	0	0	0	0	0	0	0	1	10434	1103	39	1		1	NFATC2	20	50140351	Silent	SNP	G	TCGA-A8-A09R-01A-11W-A019-09	2405855	50140351	12885169	47	13924										
POTEH	0	genome.wustl.edu	37	chr22	16277750	16277752	+	In_Frame_Del	DEL	ATT	ATT	-													0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	tttaatgtaaacacttacacAttatgacgactagaaacagc							TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	22	16277750	16277752	ATT	-	DEL	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	in_frame_del	c.1164_1162	p.N388in_frame_del	0.020:0.012:0.009	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	41	0	0	55	10	15.38	-	-	-	-	16277752	ATT	-	16277750	7	5	223	1	0	1	0	1	0	0	0	0	12341	214	8	0	497	0	POTEH	22	16277750	In_Frame_Del	DEL	ATT	TCGA-A8-A09R-01A-11W-A019-09		16277750	35026816	48	13925										
PGAM4	0	genome.wustl.edu	37	chrX	77224588	77224588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.696464443748666	1.41274238227147	5.36842105263158	0	0.142857142857143	0.62934362934363	0	ggctgttgccatgggctgcaAtcagtacacgtttcccctcc	10	14	1	0			TCGA-A8-A09R-01A-11W-A019-09	TCGA-A8-A09R-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35ebf91d-6fec-4d28-9b21-493d0e14f8db	1a2fb095-5cbc-40e1-92fd-60946a164d04	X	77224588	77224588	A	C	SNP	PGAM4	ENST00000458128	human	ensembl	69_37n	-1	known	missense	c.548	p.I183S	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM4	HGNC	ENSG00000226784	277	0	0	161	31	16.15	-	-	-	C	77224588	A	C	77224588	3	2	223	1	0	0	0	0	1	0	0	0	11849	101	4	5	220	5	PGAM4	23	77224588	Missense_Mutation	SNP	A	TCGA-A8-A09R-01A-11W-A019-09		77224588	78045972	49	13926										
TTC4	0	genome.wustl.edu	37	chr1	55194092	55194092	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	gaatcagaatgaggctttacTccaggccatcaaggtgagtt	11	8	2	3			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	1	55194092	55194092	T	C	SNP	TTC4	ENST00000371281	human	ensembl	69_37n	1	known	missense	c.668	p.L223P	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725	101	0	0	89	47	34.56	-	-	-	C	55194092	T	C	55194092	3	2	224	1	0	0	0	0	1	0	0	0	16807	1551	54	5	690	5	TTC4	1	55194092	Missense_Mutation	SNP	T	TCGA-A8-A09T-01A-11W-A019-09		55194092	194056529	1	13927										
PTPN14	0	genome.wustl.edu	37	chr1	214557496	214557496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	tcgtggccgtgggtagggggGcggtggcctgaagagatagt	21	6	0	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	1	214557496	214557496	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.1702	p.P568S	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	58	0	0	27	24	47.06	-	-	-	A	214557496	G	A	214557496	3	1	224	1	0	0	0	0	1	0	0	0	12864	1203	42	4	1889	4	PTPN14	1	214557496	Missense_Mutation	SNP	G	TCGA-A8-A09T-01A-11W-A019-09	159363404	214557496	34693125	2	13928										
OR2T35	0	genome.wustl.edu	37	chr1	248801953	248801954	+	Frame_Shift_Ins	INS	-	-	T													0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ataagcagcatcagcacgcaINSgcaggcatacatcagggtct							TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	1	248801953	248801954	-	T	INS	OR2T35	ENST00000317450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.607_606	p.C202fs	0.101:0.095	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T35	HGNC	ENSG00000177151	8	0	0	5	2	28.57	-	-	-	T	248801954	-	T	248801953	7	5	224	1	0	1	1	0	0	0	0	0	11099	188	7	0	368	0	OR2T35	1	248801953	Frame_Shift_Ins	INS	-	TCGA-A8-A09T-01A-11W-A019-09	34244457	248801953	448668	3	13929										
PREPL	0	genome.wustl.edu	37	chr2	44556197	44556197	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	taccaagagaggtttcttctGcaagtcctcagagtcagttt	9	9	4	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	2	44556197	44556197	G	A	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	nonsense	c.1408	p.Q470*	0.619	NULL	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	397	0	0	268	84	23.86	-	-	-	A	44556197	G	A	44556197	4	1	224	1	0	0	0	0	0	1	0	0	12556	1328	46	4	799	4	PREPL	2	44556197	Nonsense_Mutation	SNP	G	TCGA-A8-A09T-01A-11W-A019-09		44556197	198643176	4	13930										
RETSAT	0	genome.wustl.edu	37	chr2	85571455	85571455	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	agcctcttccctgggcatggAgacgtagcgctccatcctgc	11	15	1	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	2	85571455	85571455	A	T	SNP	RETSAT	ENST00000295802	human	ensembl	69_37n	-1	known	missense	c.1273	p.S425T	0.004	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445	42	0	0	28	11	28.21	-	-	-	T	85571455	A	T	85571455	3	4	224	1	0	0	0	0	1	0	0	0	13321	304	11	5	575	5	RETSAT	2	85571455	Missense_Mutation	SNP	A	TCGA-A8-A09T-01A-11W-A019-09	41015258	85571455	157627918	5	13931										
COL7A1	0	genome.wustl.edu	37	chr3	48612280	48612280	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ttctccagagagtccaggacCtggctcatccacagacacct	8	15	2	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	3	48612280	48612280	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.6298	p.G2100C	0.720	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	22	0	0	17	13	43.33	-	-	-	A	48612280	C	A	48612280	3	1	224	1	0	0	0	0	1	0	0	0	3734	681	24	4	2708	4	COL7A1	3	48612280	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09		48612280	149410150	6	13932										
VGLL3	0	genome.wustl.edu	37	chr3	87018135	87018135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	gccaaggactgggatcagctGcagaaaaggtgccagggggt	17	8	1	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	3	87018135	87018135	G	A	SNP	VGLL3	ENST00000398399	human	ensembl	69_37n	-1	known	missense	c.542	p.A181V	0.714	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538	200	0	0	96	36	27.27	-	-	-	A	87018135	G	A	87018135	3	1	224	1	0	0	0	0	1	0	0	0	17257	1319	46	4	446	4	VGLL3	3	87018135	Missense_Mutation	SNP	G	TCGA-A8-A09T-01A-11W-A019-09	38405855	87018135	111004295	7	13933										
PLCXD2	0	genome.wustl.edu	37	chr3	111432878	111432878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ctctgagtgagcgggcctcaCggggctccttccatgtctcc	12	15	3	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	3	111432878	111432878	C	T	SNP	PLCXD2	ENST00000477665	human	ensembl	69_37n	1	known	missense	c.769	p.R257W	0.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891	241	0	0	96	50	34.01	-	-	-	T	111432878	C	T	111432878	3	4	224	1	0	0	0	0	1	0	0	0	12116	527	19	1	779	1	PLCXD2	3	111432878	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09	24414743	111432878	86589552	8	13934										
TMPRSS11B	0	genome.wustl.edu	37	chr4	69101719	69101719	+	Splice_Site	DEL	C	C	-													0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	cttaaatgaacttgtacttaCagaagtttgatgacctcaga							TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	4	69101719	69101719	C	-	DEL	TMPRSS11B	ENST00000332644	human	ensembl	69_37n	-1	known	splice_site_del	c.308+1	e4+1	0.861	-	-	-	no_errors	TMPRSS11B	HGNC	ENSG00000185873	137	0	0	92	38	27.94	-	-	-	-	69101719	C	-	69101719	8	5	224	1	0	1	0	1	0	0	1	0	16335	492	17	0	969	0	TMPRSS11B	4	69101719	Splice_Site	DEL	C	TCGA-A8-A09T-01A-11W-A019-09		69101719	122052557	9	13935										
ANKRD34B	0	genome.wustl.edu	37	chr5	79855031	79855031	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ttcttcctctggtgtaatatCctggagctcctcttgcaatg	8	11	3	0			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	5	79855031	79855031	C	A	SNP	ANKRD34B	ENST00000338682	human	ensembl	69_37n	-1	known	missense	c.808	p.D270Y	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34B	HGNC	ENSG00000189127	114	0	0	85	44	34.11	-	-	-	A	79855031	C	A	79855031	3	1	224	1	0	0	0	0	1	0	0	0	662	855	30	2	740	2	ANKRD34B	5	79855031	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09		79855031	101060229	10	13936										
PCDHB11	0	genome.wustl.edu	37	chr5	140581014	140581015	+	In_Frame_Ins	INS	-	-	CCC													0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ctggtgctggacgccaacgaINScaactcgcccttcgtgctgt							TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	5	140581014	140581015	-	CCC	INS	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	in_frame_ins	c.1667_1668	p.557in_frame_insP	1.000:1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	34	0	0	29	5	14.71	-	-	-	CCC	140581015	-	CCC	140581014	7	5	224	1	0	1	1	0	0	0	0	0	11609	275	10	0	1669	0	PCDHB11	5	140581014	In_Frame_Ins	INS	-	TCGA-A8-A09T-01A-11W-A019-09	60725983	140581014	40334246	11	13937										
KIAA1429	0	genome.wustl.edu	37	chr8	95508070	95508070	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ccagcatctgcttaagtccaActacactgtccaacaaagaa	5	13	1	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	8	95508070	95508070	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.4433	p.V1478A	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	128	0	0	166	104	38.52	-	-	-	G	95508070	A	G	95508070	3	3	224	1	0	0	0	0	1	0	0	0	8283	43	2	5	1029	5	KIAA1429	8	95508070	Missense_Mutation	SNP	A	TCGA-A8-A09T-01A-11W-A019-09		95508070	50855952	12	13938										
TRPM3	0	genome.wustl.edu	37	chr9	73442886	73442886	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ggaatgcatgctgttgagaaCagtgagcttgctcatgggat	14	6	1	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	9	73442886	73442886	C	A	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.856	p.V286F	0.997	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	246	0	0	81	52	39.1	-	-	-	A	73442886	C	A	73442886	3	1	224	1	0	0	0	0	1	0	0	0	16683	478	17	4	4476	4	TRPM3	9	73442886	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09		73442886	67770545	13	13939										
RAB30	0	genome.wustl.edu	37	chr11	82698729	82698729	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	tcacaggtaatgtcataggtGaggatcaaggcattggcgct	13	7	3	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	11	82698729	82698729	G	A	SNP	RAB30	ENST00000260056	human	ensembl	69_37n	-1	known	silent	c.261	p.L87	0.997	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB30	HGNC	ENSG00000137502	263	0	0	111	88	44.22	-	-	-	A	82698729	G	A	82698729	2	1	224	1	0	0	0	0	0	0	0	1	13002	1277	45	2		2	RAB30	11	82698729	Silent	SNP	G	TCGA-A8-A09T-01A-11W-A019-09		82698729	52307787	14	13940										
COL4A2	0	genome.wustl.edu	37	chr13	111156284	111156284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	agtgggtccccaggggaggcGaggcccccctggggcaccgg	19	14	0	0			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	13	111156284	111156284	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.4229	p.R1410Q	0.352	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	12	0	0	12	4	25	-	-	-	A	111156284	G	A	111156284	3	1	224	1	0	0	0	0	1	0	0	0	3720	1058	37	1	4399	1	COL4A2	13	111156284	Missense_Mutation	SNP	G	TCGA-A8-A09T-01A-11W-A019-09		111156284	4013594	15	13941										
CYFIP1	0	genome.wustl.edu	37	chr15	23000246	23000246	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	gagattattaaaaatgtggtAtgtggatgaaaatctcgcac	10	4	1	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	15	23000246	23000246	A	G	SNP	CYFIP1	ENST00000561263	human	ensembl	69_37n	1	putative	silent	c.522	p.V174	1.000	NULL	pfam_Cytoplasmic_FMR1-int,prints_Cytoplasmic_FMR1-int	-	no_start_codon	CYFIP1	HGNC	ENSG00000068793	119	0	0	75	33	30.56	-	-	-	G	23000246	A	G	23000246	2	3	224	1	0	0	0	0	0	0	0	1	4168	464	16	5		5	CYFIP1	15	23000246	Silent	SNP	A	TCGA-A8-A09T-01A-11W-A019-09		23000246	79531146	16	13942										
CSNK2A2	0	genome.wustl.edu	37	chr16	58200581	58200581	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	tacccagaaccttggcaatgCgaacaagctgaaacacaaaa	7	11	0	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	16	58200581	58200581	C	G	SNP	CSNK2A2	ENST00000262506	human	ensembl	69_37n	-1	known	missense	c.734	p.R245P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK2A2	HGNC	ENSG00000070770	134	0	0	48	51	51.52	-	-	-	G	58200581	C	G	58200581	3	3	224	1	0	0	0	0	1	0	0	0	3990	768	27	3	330	3	CSNK2A2	16	58200581	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09		58200581	32154172	17	13943										
SGSM2	0	genome.wustl.edu	37	chr17	2279517	2279518	+	Frame_Shift_Ins	INS	-	-	C													0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	gcaactactggtacttcacgINSccccccaacctcgagaggct							TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	17	2279517	2279518	-	C	INS	SGSM2	ENST00000268989	human	ensembl	69_37n	1	known	frame_shift_ins	c.2571_2572	p.N859fs	0.000:0.001	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	13	0	0	6	2	25	-	-	-	C	2279518	-	C	2279517	7	5	224	1	0	1	1	0	0	0	0	0	14311	1074	38	0	2645	0	SGSM2	17	2279517	Frame_Shift_Ins	INS	-	TCGA-A8-A09T-01A-11W-A019-09		2279517	78915693	18	13944										
ATAD5	0	genome.wustl.edu	37	chr17	29221047	29221047	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	aatgttcttctgctatttcaAaagcattggaaaccttgaat	6	7	3	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	17	29221047	29221047	A	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.5176	p.K1726E	0.997	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	95	0	0	82	48	36.92	-	-	-	G	29221047	A	G	29221047	3	3	224	1	0	0	0	0	1	0	0	0	1080	15	1	5	5258	5	ATAD5	17	29221047	Missense_Mutation	SNP	A	TCGA-A8-A09T-01A-11W-A019-09	26941530	29221047	51974163	19	13945										
ACTG1	0	genome.wustl.edu	37	chr17	79478213	79478215	+	Splice_Site	DEL	CCC	CCC	-													0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	cctttagctcacaacacctaCccaggaaggaaggctggaac							TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	17	79478213	79478215	CCC	-	DEL	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	splice_site_del	c.802+3_802+1	e4-1	1.000:1.000:0.986	-	-	-	no_errors	ACTG1	HGNC	ENSG00000184009	26	0	0	12	6	33.33	-	-	-	-	79478215	CCC	-	79478213	8	5	224	1	0	1	0	1	0	0	1	0	196	521	18	0	336	0	ACTG1	17	79478213	Splice_Site	DEL	CCC	TCGA-A8-A09T-01A-11W-A019-09	50257166	79478213	1716997	20	13946										
GNAS	0	genome.wustl.edu	37	chr20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	ttcaggacctgcttcgctgcCgtgtcctgacttctggaatc	10	13	2	1			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	20	57484420	57484420	C	T	SNP	GNAS	ENST00000354359	human	ensembl	69_37n	1	known	missense	c.604	p.R202C	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	151	0	0	150	116	43.61	-	-	-	T	57484420	C	T	57484420	3	4	224	1	0	0	0	0	1	0	0	0	6562	652	23	1	3448	1	GNAS	20	57484420	Missense_Mutation	SNP	C	TCGA-A8-A09T-01A-11W-A019-09		57484420	5541100	21	13947										
MAGEC1	0	genome.wustl.edu	37	chrX	140994265	140994265	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.759130009869932	1.47736625514403	0	1.66203703703704	0.333333333333333	0.930327025915261	0	gtattttccagagttctcctGagagtgctcaaagtactttt	8	8	2	2			TCGA-A8-A09T-01A-11W-A019-09	TCGA-A8-A09T-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e565da2b-4a3f-4be1-9cf7-2845145d1dbc	8c267083-4672-4f9e-b5ec-19a13e897f78	X	140994265	140994265	G	A	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.1075	p.E359K	0.021	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	858	0	0	350	578	62.15	-	-	-	A	140994265	G	A	140994265	3	1	224	1	0	0	0	0	1	0	0	0	9251	1291	45	2	1081	2	MAGEC1	23	140994265	Missense_Mutation	SNP	G	TCGA-A8-A09T-01A-11W-A019-09		140994265	14276295	22	13948										
PRDM16	0	genome.wustl.edu	37	chr1	3347638	3347638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	aggaggatgaggagccagccGcctccctggccgtgggcttt	16	12	0	1			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	3347638	3347638	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	missense	c.3487	p.A1163T	0.002	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	54	0	0	23	14	35.9	-	-	-	A	3347638	G	A	3347638	3	1	225	1	0	0	0	0	1	0	0	0	12538	1087	38	1	3545	1	PRDM16	1	3347638	Missense_Mutation	SNP	G	TCGA-A8-A09V-01A-11D-A045-09		3347638	245902983	1	13949										
PADI3	0	genome.wustl.edu	37	chr1	17575713	17575713	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	gctggcgtggagaccctcgtGgacatttatgggtaagagtc	15	8	0	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	17575713	17575713	G	A	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	silent	c.81	p.V27	1.000	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	106	0	0	107	82	42.93	-	-	-	A	17575713	G	A	17575713	2	1	225	1	0	0	0	0	0	0	0	1	11452	1335	47	4		4	PADI3	1	17575713	Silent	SNP	G	TCGA-A8-A09V-01A-11D-A045-09	14228075	17575713	231674908	2	13950										
OR10J1	0	genome.wustl.edu	37	chr1	159410003	159410003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tattatgaacaagaggctgcGtatccaacttgtcctggggg	12	8	0	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	159410003	159410003	G	A	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	missense	c.455	p.R152H	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	145	0	0	221	74	25	-	-	-	A	159410003	G	A	159410003	3	1	225	1	0	0	0	0	1	0	0	0	10983	1145	40	1	457	1	OR10J1	1	159410003	Missense_Mutation	SNP	G	TCGA-A8-A09V-01A-11D-A045-09	141834290	159410003	89840618	3	13951										
IPO9	0	genome.wustl.edu	37	chr1	201827586	201827587	+	Frame_Shift_Del	DEL	AG	AG	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tctctataggctgtggccacAgatttccagaatgaaagtgc							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	201827586	201827587	AG	-	DEL	IPO9	ENST00000361565	human	ensembl	69_37n	1	known	frame_shift_del	c.1233_1234	p.D412fs	0.978:1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	16	0	0	121	16	11.68	-	-	-	-	201827587	AG	-	201827586	7	5	225	1	0	1	0	1	0	0	0	0	7853	175	7	0	1279	0	IPO9	1	201827586	Frame_Shift_Del	DEL	AG	TCGA-A8-A09V-01A-11D-A045-09	42417583	201827586	47423035	4	13952										
CR1	0	genome.wustl.edu	37	chr1	207793390	207793390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	ggatgacagatgggaccctcCtctggccaaatgtacctctc	10	13	2	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	207793390	207793390	C	G	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.7232	p.P2411R	0.995	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	243	0	0	322	108	25.12	-	-	-	G	207793390	C	G	207793390	3	3	225	1	0	0	0	0	1	0	0	0	3870	681	24	4	7402	4	CR1	1	207793390	Missense_Mutation	SNP	C	TCGA-A8-A09V-01A-11D-A045-09	5965804	207793390	41457231	5	13953										
FARSB	0	genome.wustl.edu	37	chr2	223436667	223436667	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tttggtgataacgtcaggatGaaggaccccaagcttcccga	11	10	1	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	2	223436667	223436667	G	C	SNP	FARSB	ENST00000281828	human	ensembl	69_37n	-1	known	missense	c.1693	p.H565D	1.000	tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120	110	0	0	82	64	43.84	-	-	-	C	223436667	G	C	223436667	3	2	225	1	0	0	0	0	1	0	0	0	5726	1290	45	2	80	2	FARSB	2	223436667	Missense_Mutation	SNP	G	TCGA-A8-A09V-01A-11D-A045-09		223436667	19762706	6	13954										
COMMD2	0	genome.wustl.edu	37	chr3	149470040	149470042	+	In_Frame_Del	DEL	GAA	GAA	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	gggtttgcgccgcgtctcagGaattccacagcaatccgccc							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	149470040	149470042	GAA	-	DEL	COMMD2	ENST00000473414	human	ensembl	69_37n	-1	known	in_frame_del	c.102_100	p.F34in_frame_del	1.000:1.000:1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD2	HGNC	ENSG00000114744	142	0	0	57	50	45.05	-	-	-	-	149470042	GAA	-	149470040	7	5	225	1	0	1	0	1	0	0	0	0	3746	1165	41	0	513	0	COMMD2	3	149470040	In_Frame_Del	DEL	GAA	TCGA-A8-A09V-01A-11D-A045-09		149470040	48552390	7	13955										
OPA1	0	genome.wustl.edu	37	chr3	193353241	193353243	+	In_Frame_Del	DEL	AGG	AGG	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	aatcttggaacgattagaaaAggagaacaaagaattgagaa							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	193353241	193353243	AGG	-	DEL	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	in_frame_del	c.878_880	p.E294in_frame_del	1.000:1.000:1.000	NULL	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	50	0	0	199	80	28.67	-	-	-	-	193353243	AGG	-	193353241	7	5	225	1	0	1	0	1	0	0	0	0	10944	72	3	0	912	0	OPA1	3	193353241	In_Frame_Del	DEL	AGG	TCGA-A8-A09V-01A-11D-A045-09	43883201	193353241	4669189	8	13956										
MUC20	0	genome.wustl.edu	37	chr3	195452668	195452668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	ccccatccagtcatcaccccCtcatggtccccgggatctga	7	19	4	1			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	195452668	195452668	C	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	silent	c.1194	p.P398	0.004	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	46	0	0	88	13	12.87	-	-	-	G	195452668	C	G	195452668	2	3	225	1	0	0	0	0	0	0	0	1	10048	695	24	4		4	MUC20	3	195452668	Silent	SNP	C	TCGA-A8-A09V-01A-11D-A045-09	2099427	195452668	2569762	9	13957										
MUC4	0	genome.wustl.edu	37	chr3	195515141	195515141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	agtgtcggtgacaggaagagAggtggcgtgacctgtggatg	19	5	0	3			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	195515141	195515141	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.3310	p.S1104P	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	47	0	0	330	47	12.43	-	-	-	G	195515141	A	G	195515141	3	3	225	1	0	0	0	0	1	0	0	0	10050	304	11	5		5	MUC4	3	195515141	Missense_Mutation	SNP	A	TCGA-A8-A09V-01A-11D-A045-09	62473	195515141	2507289	10	13958										
PTPN13	0	genome.wustl.edu	37	chr4	87662819	87662820	+	Frame_Shift_Del	DEL	TT	TT	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	ctgacagaatatggagttcaTtttcaccgagtgcaccctga							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	4	87662819	87662820	TT	-	DEL	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	frame_shift_del	c.2337_2338	p.F780fs	1.000:1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	175	0	0	271	35	11.33	-	-	-	-	87662820	TT	-	87662819	7	5	225	1	0	1	0	1	0	0	0	0	12863	1490	52	0	2395	0	PTPN13	4	87662819	Frame_Shift_Del	DEL	TT	TCGA-A8-A09V-01A-11D-A045-09		87662819	103491457	11	13959										
PFDN6	0	genome.wustl.edu	37	chr6	33258127	33258127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tggccctgctggatgggtccAacgtggtctttaaacttctg	12	10	2	0			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	6	33258127	33258127	A	G	SNP	PFDN6	ENST00000374606	human	ensembl	69_37n	1	known	missense	c.160	p.N54D	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN6	HGNC	ENSG00000204220	182	0	0	179	152	45.92	-	-	-	G	33258127	A	G	33258127	3	3	225	1	0	0	0	0	1	0	0	0	11833	130	5	5	170	5	PFDN6	6	33258127	Missense_Mutation	SNP	A	TCGA-A8-A09V-01A-11D-A045-09		33258127	137856940	12	13960										
SPACA1	0	genome.wustl.edu	37	chr6	88769287	88769288	+	Frame_Shift_Del	DEL	CA	CA	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	atagtagcaactattaaattCacagtctatacgagcagtgg							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	6	88769287	88769288	CA	-	DEL	SPACA1	ENST00000237201	human	ensembl	69_37n	1	known	frame_shift_del	c.591_592	p.T198fs	1.000:1.000	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	46	0	0	178	41	18.64	-	-	-	-	88769288	CA	-	88769287	7	5	225	1	0	1	0	1	0	0	0	0	15061	825	29	0	609	0	SPACA1	6	88769287	Frame_Shift_Del	DEL	CA	TCGA-A8-A09V-01A-11D-A045-09	55511160	88769287	82345780	13	13961										
SFXN2	0	genome.wustl.edu	37	chr10	104489151	104489151	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	ggcatgaacatgttgacaaaGgtatggtctggggccgctgc	15	8	1	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	10	104489151	104489151	G	A	SNP	SFXN2	ENST00000369893	human	ensembl	69_37n	1	known	silent	c.507	p.K169	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398	75	0	0	30	24	44.44	-	-	-	A	104489151	G	A	104489151	2	1	225	1	0	0	0	0	0	0	0	1	14283	1014	35	4		4	SFXN2	10	104489151	Silent	SNP	G	TCGA-A8-A09V-01A-11D-A045-09		104489151	31045596	14	13962										
SNRNP35	0	genome.wustl.edu	37	chr12	123950441	123950441	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	gctgatggcctggttattgaCcagcatgagatatttgtgga	13	6	0	3			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	12	123950441	123950441	C	A	SNP	SNRNP35	ENST00000412157	human	ensembl	69_37n	1	known	missense	c.369	p.D123E	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRNP35	HGNC	ENSG00000184209	74	0	0	182	31	14.55	-	-	-	A	123950441	C	A	123950441	3	1	225	1	0	0	0	0	1	0	0	0	14944	506	18	4	375	4	SNRNP35	12	123950441	Missense_Mutation	SNP	C	TCGA-A8-A09V-01A-11D-A045-09		123950441	9901454	15	13963										
TDRD3	0	genome.wustl.edu	37	chr13	61013901	61013901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	atgacatcatcctgattgctCtcaatgtaggttatatttat	6	7	2	2			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	13	61013901	61013901	C	G	SNP	TDRD3	ENST00000535286	human	ensembl	69_37n	1	known	missense	c.121	p.L41V	1.000	pfam_DUF1767	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	66	0	0	100	61	37.89	-	-	-	G	61013901	C	G	61013901	3	3	225	1	0	0	0	0	1	0	0	0	15827	913	32	2	127	2	TDRD3	13	61013901	Missense_Mutation	SNP	C	TCGA-A8-A09V-01A-11D-A045-09		61013901	54155977	16	13964										
SNAP23	0	genome.wustl.edu	37	chr15	42820532	42820533	+	Frame_Shift_Del	DEL	TG	TG	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	ggagaaaactcaccttgcaaTgtagtatctaaacagccagg							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	15	42820532	42820533	TG	-	DEL	SNAP23	ENST00000249647	human	ensembl	69_37n	1	known	frame_shift_del	c.339_340	p.V114fs	0.775:0.991	pfam_SNAP-25	pfam_T_SNARE_dom,pfam_SNAP-25,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP23	HGNC	ENSG00000092531	40	0	0	88	59	40.14	-	-	-	-	42820533	TG	-	42820532	7	5	225	1	0	1	0	1	0	0	0	0	14918	1461	51	0	357	0	SNAP23	15	42820532	Frame_Shift_Del	DEL	TG	TCGA-A8-A09V-01A-11D-A045-09		42820532	59710860	17	13965										
CDH1	0	genome.wustl.edu	37	chr16	68842433	68842433	+	Frame_Shift_Del	DEL	A	A	-													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tcctcccatcagctgcccagAaaatgaaaaaggcccatttc							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	16	68842433	68842433	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.494	p.N166fs	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	94	0	0	58	47	44.76	-	-	-	-	68842433	A	-	68842433	7	5	225	1	0	1	0	1	0	0	0	0	3124	246	9	0	508	0	CDH1	16	68842433	Frame_Shift_Del	DEL	A	TCGA-A8-A09V-01A-11D-A045-09		68842433	21512320	18	13966	160	2								
CDH1	0	genome.wustl.edu	37	chr16	68842438	68842439	+	In_Frame_Ins	INS	-	-	CCC													0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	catcagctgcccagaaaatgINSaaaaaggcccatttcctaaa							TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	16	68842438	68842439	-	CCC	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	in_frame_ins	c.499_500	p.E167in_frame_insAQ	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	90	0	0	43	46	51.69	-	-	-	CCC	68842439	-	CCC	68842438	7	5	225	1	0	1	1	0	0	0	0	0	3124	1291	45	0	513	0	CDH1	16	68842438	In_Frame_Ins	INS	-	TCGA-A8-A09V-01A-11D-A045-09	5	68842438	21512315	19	13967	160	2								
MUC16	0	genome.wustl.edu	37	chr19	9018133	9018133	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tggctcttctaaagtctcacCtgagcaaggtcagtctgcag	10	11	5	1			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	9018133	9018133	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.37805	p.R12602M	0.848	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	848	0	0	291	238	44.99	-	-	-	A	9018133	C	A	9018133	3	1	225	1	0	0	0	0	1	0	0	0	10045	695	24	4	5958	4	MUC16	19	9018133	Missense_Mutation	SNP	C	TCGA-A8-A09V-01A-11D-A045-09		9018133	50110850	20	13968										
RYR1	0	genome.wustl.edu	37	chr19	38976254	38976254	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	atggacatcctggagctgtcGgagcgcctggacctgcagcg	15	12	0	0			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	38976254	38976254	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.4959	p.S1653	0.162	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	24	0	0	4	7	63.64	-	-	-	A	38976254	G	A	38976254	2	1	225	1	0	0	0	0	0	0	0	1	13854	1103	39	1		1	RYR1	19	38976254	Silent	SNP	G	TCGA-A8-A09V-01A-11D-A045-09	29958121	38976254	20152729	21	13969										
NPAS1	0	genome.wustl.edu	37	chr19	47543707	47543707	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	tctgtcaccccccagagtcaGcgaccacatggacctggggc	11	16	3	1			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	47543707	47543707	G	C	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	1	known	missense	c.968	p.S323T	0.998	pfam_PAS_fold_3,smart_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	39	0	0	22	11	33.33	-	-	-	C	47543707	G	C	47543707	3	2	225	1	0	0	0	0	1	0	0	0	10634	971	34	4	998	4	NPAS1	19	47543707	Missense_Mutation	SNP	G	TCGA-A8-A09V-01A-11D-A045-09	8567453	47543707	11585276	22	13970										
CXorf65	0	genome.wustl.edu	37	chrX	70323923	70323923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	2	0.748194421809448	1.49777777777778	2.99555555555556	0	0.333333333333333	0.930327025915261	0	cctaaaggtcggagacttgcGagtggacttctttttgtctg	12	8	2	1			TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	X	70323923	70323923	G	T	SNP	CXorf65	ENST00000374251	human	ensembl	69_37n	-1	known	missense	c.466	p.R156S	0.088	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165	216	0	0	275	166	37.64	-	-	-	T	70323923	G	T	70323923	3	4	225	1	0	0	0	0	1	0	0	0	4148	1058	37	3	89	3	CXorf65	23	70323923	Missense_Mutation	SNP	G	TCGA-A8-A09V-01A-11D-A045-09		70323923	84946637	23	13971										
PRAMEF6	0	genome.wustl.edu	37	chr1	13111617	13111617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ttggacagtcctgcactggtTttttgttcctcttggcattg	10	9	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	13111617	13111617	T	G	SNP	PRAMEF6	ENST00000376182	human	ensembl	69_37n	-1	known	missense	c.398	p.K133T	0.000	NULL	NULL	-	no_errors	PRAMEF6	HGNC	ENSG00000232423	37	0	0	13	3	18.75	-	-	-	G	13111617	T	G	13111617	3	3	226	1	0	0	0	0	1	0	0	0	12518	1841	64	5		5	PRAMEF6	1	13111617	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		13111617	236139004	1	13972										
UBR4	0	genome.wustl.edu	37	chr1	19419810	19419810	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gcgggagggcttcatacttcTtggcgctagggatgtgcttt	15	8	2	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	19419810	19419810	T	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.14108	p.K4703M	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	143	0	0	47	74	61.16	-	-	-	A	19419810	T	A	19419810	3	1	226	1	0	0	0	0	1	0	0	0	17001	1609	56	5	1487	5	UBR4	1	19419810	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	6308193	19419810	229830811	2	13973										
CYP4B1	0	genome.wustl.edu	37	chr1	47279655	47279655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gcgccttgtgtccttccagtAccataatgacttcatctact	6	13	2	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	47279655	47279655	A	C	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	missense	c.695	p.Y232S	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	155	0	0	105	48	31.37	-	-	-	C	47279655	A	C	47279655	3	2	226	1	0	0	0	0	1	0	0	0	4216	391	14	5	717	5	CYP4B1	1	47279655	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	27859845	47279655	201970966	3	13974										
HMCN1	0	genome.wustl.edu	37	chr1	186014957	186014957	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gccaccccttgctgaagaaaCcaggcctcagtatatctgaa	8	13	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	186014957	186014957	C	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.6442	p.P2148A	1.000	pfam_Ig_I-set,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	152	0	0	196	42	17.65	-	-	-	G	186014957	C	G	186014957	3	3	226	1	0	0	0	0	1	0	0	0	7271	507	18	4	6604	4	HMCN1	1	186014957	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	138735302	186014957	63235664	4	13975										
DENND1B	0	genome.wustl.edu	37	chr1	197479779	197479779	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ccaagaccgggtataagcagAtcatctgaaatctggcttag	10	9	3	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	197479779	197479779	A	T	SNP	DENND1B	ENST00000391979	human	ensembl	69_37n	-1	putative	missense	c.1059	p.D353E	0.855	NULL	NULL	-	no_start_codon	DENND1B	HGNC	ENSG00000213047	367	0	0	384	96	19.96	-	-	-	T	197479779	A	T	197479779	3	4	226	1	0	0	0	0	1	0	0	0	4463	330	12	5	192	5	DENND1B	1	197479779	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	11464822	197479779	51770842	5	13976										
SYT2	0	genome.wustl.edu	37	chr1	202571070	202571070	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	actcctcaatgggctggccgAggtccactgtgttcataggc	12	12	2	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	202571070	202571070	A	T	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	missense	c.749	p.L250H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	240	0	0	332	117	25.88	-	-	-	T	202571070	A	T	202571070	3	4	226	1	0	0	0	0	1	0	0	0	15566	304	11	5	526	5	SYT2	1	202571070	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	5091291	202571070	46679551	6	13977										
DSTYK	0	genome.wustl.edu	37	chr1	205116809	205116809	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ctcttcaaggggtcgccatcCcaacaggcttccatcaactg	8	15	3	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	205116809	205116809	C	G	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	missense	c.2667	p.W889C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	156	0	0	286	53	15.63	-	-	-	G	205116809	C	G	205116809	3	3	226	1	0	0	0	0	1	0	0	0	4820	624	22	4	126	4	DSTYK	1	205116809	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	2545739	205116809	44133812	7	13978										
USH2A	0	genome.wustl.edu	37	chr1	215844496	215844496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ccacaaaagagaaacagttgGctggaatcctcctggagcca	10	11	0	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	1	215844496	215844496	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13951	p.P4651A	1.000	smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	502	0	0	594	129	17.84	-	-	-	C	215844496	G	C	215844496	3	2	226	1	0	0	0	0	1	0	0	0	17133	1203	42	4	1693	4	USH2A	1	215844496	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	10727687	215844496	33406125	8	13979										
SNTG2	0	genome.wustl.edu	37	chr2	1251147	1251147	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aactccaaggagctgactccTctcaaaccttcagacccaag	6	15	2	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	1251147	1251147	T	G	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	1	known	missense	c.937	p.S313A	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	132	0	0	138	45	24.46	-	-	-	G	1251147	T	G	1251147	3	3	226	1	0	0	0	0	1	0	0	0	14964	1551	54	5	983	5	SNTG2	2	1251147	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		1251147	241948226	9	13980										
PLEKHH2	0	genome.wustl.edu	37	chr2	43927079	43927079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gaagtgaaatgtatctgacaGcatctgatgacagcagctct	10	8	3	4			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	43927079	43927079	G	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.982	p.A328T	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	125	0	0	162	45	21.63	-	-	-	A	43927079	G	A	43927079	3	1	226	1	0	0	0	0	1	0	0	0	12151	971	34	4	1008	4	PLEKHH2	2	43927079	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	42675932	43927079	199272294	10	13981										
TMEM131	0	genome.wustl.edu	37	chr2	98409376	98409376	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gcttatgactcccggcactgGgtcgggatgatgaaccgcct	13	12	0	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	98409376	98409376	G	C	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.3617	p.P1206R	0.104	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	23	0	0	11	9	45	-	-	-	C	98409376	G	C	98409376	3	2	226	1	0	0	0	0	1	0	0	0	16139	1232	43	4	2078	4	TMEM131	2	98409376	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	54482297	98409376	144789997	11	13982										
PROC	0	genome.wustl.edu	37	chr2	128186342	128186343	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	atgcctgcgagggcgacagtINSggggggcccatggtcgcctc							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	128186342	128186343	-	G	INS	PROC	ENST00000453608	human	ensembl	69_37n	1	known	frame_shift_ins	c.1371_1372	p.P459fs	0.980:1.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROC	HGNC	ENSG00000115718	22	0	0	17	2	10.53	-	-	-	G	128186343	-	G	128186342	7	5	226	1	0	1	1	0	0	0	0	0	12626	1693	59	0	1236	0	PROC	2	128186342	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	29776966	128186342	115013031	12	13983										
TNFAIP6	0	genome.wustl.edu	37	chr2	152214261	152214261	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aaggatggaatttttcataaCtccatatggcttggtaagaa	9	5	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	152214261	152214261	C	A	SNP	TNFAIP6	ENST00000243347	human	ensembl	69_37n	1	known	missense	c.81	p.N27K	1.000	NULL	pfam_CUB,pfam_Link,superfamily_CUB,superfamily_C-type_lectin_fold,smart_Link,smart_CUB,pfscan_CUB,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	192	0	0	78	60	43.48	-	-	-	A	152214261	C	A	152214261	3	1	226	1	0	0	0	0	1	0	0	0	16370	564	20	4	83	4	TNFAIP6	2	152214261	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	24027919	152214261	90985112	13	13984										
TTN	0	genome.wustl.edu	37	chr2	179584289	179584289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cattctactcaccagaaacaTggacggatacagtgcagtta	8	10	2	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	179584289	179584289	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20198	p.H6733R	0.974	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	468	0	0	326	155	32.22	-	-	-	C	179584289	T	C	179584289	3	2	226	1	0	0	0	0	1	0	0	0	16832	1464	51	5	80723	5	TTN	2	179584289	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	27370028	179584289	63615084	14	13985										
TNS1	0	genome.wustl.edu	37	chr2	218713217	218713217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tccattgaccataggctccaTggggtaggacttgtccagac	11	11	0	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	2	218713217	218713217	T	C	SNP	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	missense	c.1648	p.M550V	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	28	0	0	68	16	19.05	-	-	-	C	218713217	T	C	218713217	3	2	226	1	0	0	0	0	1	0	0	0	16438	1464	51	5	3627	5	TNS1	2	218713217	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	39128928	218713217	24486156	15	13986										
CHL1	0	genome.wustl.edu	37	chr3	370003	370003	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gcttcaaataaactgggaatCgctatgtcagaagaaataga	9	6	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	3	370003	370003	C	T	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	silent	c.351	p.I117	0.622	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	247	0	0	211	144	40.56	-	-	-	T	370003	C	T	370003	2	4	226	1	0	0	0	0	0	0	0	1	3378	874	31	1		1	CHL1	3	370003	Silent	SNP	C	TCGA-A8-A09W-01A-11W-A019-09		370003	197652427	16	13987										
ITPR1	0	genome.wustl.edu	37	chr3	4730242	4730242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aatttttgcagaatttctgcGcaggcaaccagcagaatcaa	8	9	2	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	3	4730242	4730242	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.3721	p.A1241T	0.998	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	406	1	0.25	228	134	37.02	-	-	-	A	4730242	G	A	4730242	3	1	226	1	0	0	0	0	1	0	0	0	7974	1087	38	1	3880	1	ITPR1	3	4730242	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	4360239	4730242	193292188	17	13988										
WNT5A	0	genome.wustl.edu	37	chr3	55513565	55513565	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ataatatatacttctgacatCtgaacagggttattcatacc	5	8	3	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	3	55513565	55513565	C	T	SNP	WNT5A	ENST00000264634	human	ensembl	69_37n	-1	known	silent	c.168	p.Q56	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251	116	0	0	91	54	37.24	-	-	-	T	55513565	C	T	55513565	2	4	226	1	0	0	0	0	0	0	0	1	17488	912	32	2		2	WNT5A	3	55513565	Silent	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	50783323	55513565	142508865	18	13989										
GUCA1C	0	genome.wustl.edu	37	chr3	108639378	108639378	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	taatttttgctccattttttCttgcatgattagatttacag	5	6	1	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	3	108639378	108639378	C	G	SNP	GUCA1C	ENST00000261047	human	ensembl	69_37n	-1	known	missense	c.259	p.E87Q	0.998	pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472	174	0	0	129	67	34.01	-	-	-	G	108639378	C	G	108639378	3	3	226	1	0	0	0	0	1	0	0	0	6941	922	32	2	382	2	GUCA1C	3	108639378	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	53125813	108639378	89383052	19	13990										
GFM1	0	genome.wustl.edu	37	chr3	158370027	158370027	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aaaaaatcccctcgatttctGatttaaaggcaagtgctttc	6	9	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	3	158370027	158370027	G	T	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	1	known	missense	c.832	p.D278Y	1.000	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	229	0	0	160	79	33.05	-	-	-	T	158370027	G	T	158370027	3	4	226	1	0	0	0	0	1	0	0	0	6393	1290	45	2	854	2	GFM1	3	158370027	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	49730649	158370027	39652403	20	13991										
KIF13A	0	genome.wustl.edu	37	chr6	17781438	17781438	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ctgtgctttatgatgggcagGtagaaaaactggctgccatg	13	7	0	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	6	17781438	17781438	G	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	nonsense	c.3639	p.Y1213*	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	108	0	0	101	27	21.09	-	-	-	C	17781438	G	C	17781438	4	2	226	1	0	0	0	0	0	1	0	0	8326	1256	44	4	1843	4	KIF13A	6	17781438	Nonsense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09		17781438	153333629	21	13992										
KLC4	0	genome.wustl.edu	37	chr6	43038519	43038519	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ggcaagtatgaggccgtggaAcgctactaccagcgagcact	13	11	0	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	6	43038519	43038519	A	T	SNP	KLC4	ENST00000259708	human	ensembl	69_37n	1	known	missense	c.1125	p.E375D	0.907	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171	28	0	0	31	17	34.69	-	-	-	T	43038519	A	T	43038519	3	4	226	1	0	0	0	0	1	0	0	0	8389	40	2	5	1224	5	KLC4	6	43038519	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	25257081	43038519	128076548	22	13993										
DST	0	genome.wustl.edu	37	chr6	56330983	56330983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ggaccagtcgcagttgctggGagtctccaaactgttcagtg	13	10	2	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	6	56330983	56330983	G	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.22487	p.S7496Y	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_GAS2_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	101	0	0	70	34	32.69	-	-	-	T	56330983	G	T	56330983	3	4	226	1	0	0	0	0	1	0	0	0	4818	1174	41	2	824	2	DST	6	56330983	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	13292464	56330983	114784084	23	13994										
ADCYAP1R1	0	genome.wustl.edu	37	chr7	31142972	31142973	+	Frame_Shift_Ins	INS	-	-	AA													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gtttgagctggggctgggctINSccttccaggtaggtgtggca							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	7	31142972	31142973	-	AA	INS	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	1	known	frame_shift_ins	c.1168_1169	p.S390fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	53	0	0	22	10	31.25	-	-	-	AA	31142973	-	AA	31142972	7	5	226	1	0	1	1	0	0	0	0	0	303	1551	54	0	1218	0	ADCYAP1R1	7	31142972	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09		31142972	127995691	24	13995										
EPDR1	0	genome.wustl.edu	37	chr7	37960286	37960286	+	Frame_Shift_Del	DEL	A	A	-													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cagtggcagcaggcagtggcAgcaggcagtggcccaggcag							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	7	37960286	37960286	A	-	DEL	EPDR1	ENST00000559325	human	ensembl	69_37n	1	known	frame_shift_del	c.105	p.A36fs	0.042	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	12	0	0	4	2	33.33	-	-	-	-	37960286	A	-	37960286	7	5	226	1	0	1	0	1	0	0	0	0	5200	175	7	0	107	0	EPDR1	7	37960286	Frame_Shift_Del	DEL	A	TCGA-A8-A09W-01A-11W-A019-09	6817314	37960286	121178377	25	13996										
HECW1	0	genome.wustl.edu	37	chr7	43591930	43591930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gcggaataacactgagtaccGgggaggtgagtgggcaggag	19	6	0	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	7	43591930	43591930	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.4505	p.R1502Q	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	148	1	0.67	113	66	36.87	-	-	-	A	43591930	G	A	43591930	3	1	226	1	0	0	0	0	1	0	0	0	7093	1116	39	1	4607	1	HECW1	7	43591930	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	5631644	43591930	115546733	26	13997										
FLNC	0	genome.wustl.edu	37	chr7	128486940	128486941	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	atgacgtcaacatcaccttcINSggggggcggcccatcccagg							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	7	128486940	128486941	-	G	INS	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	frame_shift_ins	c.4269_4270	p.R1425fs	0.939:1.000	pfam_Filamin/ABP280_repeat-like,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	23	0	0	23	3	11.54	-	-	-	G	128486941	-	G	128486940	7	5	226	1	0	1	1	0	0	0	0	0	5981	883	31	0	4363	0	FLNC	7	128486940	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	84895010	128486940	30651723	27	13998										
UBE3C	0	genome.wustl.edu	37	chr7	157041140	157041140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tgcttggaaccagtgccgacGtggacattcaccacctcgcc	10	15	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	7	157041140	157041140	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	missense	c.2560	p.V854M	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	170	0	0	41	74	64.35	-	-	-	A	157041140	G	A	157041140	3	1	226	1	0	0	0	0	1	0	0	0	16978	1145	40	1	2634	1	UBE3C	7	157041140	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	28554200	157041140	2097523	28	13999										
CSGALNACT1	0	genome.wustl.edu	37	chr8	19315248	19315248	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cctcagccaatatgtgcatcTgagccatcacagcttctaag	7	13	4	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	8	19315248	19315248	T	A	SNP	CSGALNACT1	ENST00000518542	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408	125	0	0	60	32	34.78	-	-	-	A	19315248	T	A	19315248	1	1	226	0	1	0	0	0	0	0	0	0	3970	1595	55	5		5	CSGALNACT1	8	19315248	RNA	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		19315248	127048774	29	14000										
IDO2	0	genome.wustl.edu	37	chr8	39872802	39872802	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aatgagggattacatgcctcCttcccataaggccttcatag	8	11	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	8	39872802	39872802	C	A	SNP	IDO2	ENST00000502986	human	ensembl	69_37n	1	known	missense	c.944	p.P315H	1.000	pfam_Indolamine_dOase	pfam_Indolamine_dOase	-	no_errors	IDO2	HGNC	ENSG00000188676	203	0	0	202	46	18.55	-	-	-	A	39872802	C	A	39872802	3	1	226	1	0	0	0	0	1	0	0	0	7556	681	24	4	986	4	IDO2	8	39872802	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	20557554	39872802	106491220	30	14001										
SMARCA2	0	genome.wustl.edu	37	chr9	2084197	2084198	+	Splice_Site	INS	-	-	ACA													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	caagcacattcttgcaaaggINStatgtttttaaaaaattatt							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	9	2084197	2084198	-	ACA	INS	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	splice_site_ins	c.2526+1_2526+1	e16+1	1.000:1.000	-	-	-	no_errors	SMARCA2	HGNC	ENSG00000080503	99	0	0	78	14	15.22	-	-	-	ACA	2084198	-	ACA	2084197	8	5	226	1	0	1	1	0	0	0	1	0	14858	1275	44	0	2589	0	SMARCA2	9	2084197	Splice_Site	INS	-	TCGA-A8-A09W-01A-11W-A019-09		2084197	139129234	31	14002										
TNFSF8	0	genome.wustl.edu	37	chr9	117692389	117692389	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aggaagaggagtccacttacCgtcctctgaacgaccaacac	9	13	1	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	9	117692389	117692389	C	G	SNP	TNFSF8	ENST00000223795	human	ensembl	69_37n	-1	known	silent	c.195	p.T65	1.000	pirsf_TNF_CD30_ligand_type	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_CD30_ligand_type,pfscan_TNF	-	no_errors	TNFSF8	HGNC	ENSG00000106952	216	0	0	272	96	26.09	-	-	-	G	117692389	C	G	117692389	2	3	226	1	0	0	0	0	0	0	0	1	16406	666	23	3		3	TNFSF8	9	117692389	Silent	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	115608192	117692389	23521042	32	14003										
CRTAC1	0	genome.wustl.edu	37	chr10	99696026	99696026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ggcgttcccctgccggtcccGcagcgcgtagtagggtgagc	16	14	0	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	10	99696026	99696026	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	69_37n	-1	known	missense	c.322	p.R108W	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	-	no_errors	CRTAC1	HGNC	ENSG00000095713	56	0	0	54	18	25	-	-	-	A	99696026	G	A	99696026	3	1	226	1	0	0	0	0	1	0	0	0	3926	1086	38	1	1715	1	CRTAC1	10	99696026	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09		99696026	35838721	33	14004										
STK33	0	genome.wustl.edu	37	chr11	8457117	8457117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ctttcataagttgtttcaaaAcacttttagctaaaaataag	4	6	2	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	11	8457117	8457117	A	G	SNP	STK33	ENST00000315204	human	ensembl	69_37n	-1	known	missense	c.1070	p.V357A	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK33	HGNC	ENSG00000130413	50	0	0	34	19	35.85	-	-	-	G	8457117	A	G	8457117	3	3	226	1	0	0	0	0	1	0	0	0	15391	43	2	5	486	5	STK33	11	8457117	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09		8457117	126549399	34	14005										
OR5A2	0	genome.wustl.edu	37	chr11	59190301	59190301	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	agggcaatgaggcttaagttCcaggccaacgtcaggaggta	14	8	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	11	59190301	59190301	C	G	SNP	OR5A2	ENST00000302040	human	ensembl	69_37n	-1	known	missense	c.126	p.W42C	1.000	pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A2	HGNC	ENSG00000172324	248	0	0	216	93	30	-	-	-	G	59190301	C	G	59190301	3	3	226	1	0	0	0	0	1	0	0	0	11213	856	30	2	850	2	OR5A2	11	59190301	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	50733184	59190301	75816215	35	14006										
BEST1	0	genome.wustl.edu	37	chr11	61719427	61719428	+	Frame_Shift_Ins	INS	-	-	C													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tacatcatccgctttatttaINStaggtaaagctggcagggct							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	11	61719427	61719428	-	C	INS	BEST1	ENST00000378043	human	ensembl	69_37n	1	known	frame_shift_ins	c.149_150	p.R51fs	1.000:0.994	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	43	0	0	47	20	29.85	-	-	-	C	61719428	-	C	61719427	7	5	226	1	0	1	1	0	0	0	0	0	1408	449	16	0	151	0	BEST1	11	61719427	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	2529126	61719427	73287089	36	14007										
BRMS1	0	genome.wustl.edu	37	chr11	66107594	66107594	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ccttgggtgaaaggataccaGaaaccagaggtgccttcttc	11	10	1	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	11	66107594	66107594	G	C	SNP	BRMS1	ENST00000425825	human	ensembl	69_37n	-1	known	missense	c.626	p.S209C	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744	10	0	0	5	7	58.33	-	-	-	C	66107594	G	C	66107594	3	2	226	1	0	0	0	0	1	0	0	0	1524	942	33	2	274	2	BRMS1	11	66107594	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	4388167	66107594	68898922	37	14008										
FAT3	0	genome.wustl.edu	37	chr11	92531848	92531851	+	Frame_Shift_Del	DEL	CTAT	CTAT	-													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tactcaggctgtgtttgagaCtatcttacttctacctacct							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	CTAT	CTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	11	92531848	92531851	CTAT	-	DEL	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_del	c.5669_5672	p.I1891fs	1.000:0.033:0.511:0.941	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	95	0	0	68	47	40.87	-	-	-	-	92531851	CTAT	-	92531848	7	5	226	1	0	1	0	1	0	0	0	0	5737	565	20	0	5703	0	FAT3	11	92531848	Frame_Shift_Del	DEL	CTAT	TCGA-A8-A09W-01A-11W-A019-09	26424254	92531848	42474668	38	14009										
POLE	0	genome.wustl.edu	37	chr12	133226423	133226423	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ttacgaggccgaagtcctccAtgtcaggagcacttggcctc	11	13	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	12	133226423	133226423	A	G	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.3668	p.M1223T	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	48	0	0	45	22	32.84	-	-	-	G	133226423	A	G	133226423	3	3	226	1	0	0	0	0	1	0	0	0	12270	217	8	5	3305	5	POLE	12	133226423	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09		133226423	625472	39	14010										
RB1	0	genome.wustl.edu	37	chr13	49030343	49030343	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cctttaaatatatctaggtaTctttctcctgtaagatctcc	4	10	4	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	13	49030343	49030343	T	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.1818	p.Y606*	1.000	NULL	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	241	0	0	60	76	55.88	-	-	-	G	49030343	T	G	49030343	4	3	226	1	0	0	0	0	0	1	0	0	13181	1442	50	5	1892	5	RB1	13	49030343	Nonsense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		49030343	66139535	40	14011										
PCID2	0	genome.wustl.edu	37	chr13	113851457	113851457	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gtaatccactgcatgtgttcTatgcgggacagctgccatga	11	10	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	13	113851457	113851457	T	C	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	missense	c.301	p.R101G	0.000	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	102	0	0	129	71	35.5	-	-	-	C	113851457	T	C	113851457	3	2	226	1	0	0	0	0	1	0	0	0	11652	1537	53	5		5	PCID2	13	113851457	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	64821114	113851457	1318421	41	14012										
MYH7	0	genome.wustl.edu	37	chr14	23885466	23885466	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gctcgatctctgccttgatcTggttgaactccagctgggcc	11	13	2	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	14	23885466	23885466	T	G	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4700	p.Q1567P	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	96	0	0	73	47	38.84	-	-	-	G	23885466	T	G	23885466	3	3	226	1	0	0	0	0	1	0	0	0	10111	1580	55	5	1135	5	MYH7	14	23885466	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		23885466	83464074	42	14013										
HECTD1	0	genome.wustl.edu	37	chr14	31605846	31605846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	caccaggtgcacgttccaacCgaaatcgtaatctccttgta	7	13	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	14	31605846	31605846	C	T	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.3005	p.R1002Q	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	207	0	0	164	82	33.2	-	-	-	T	31605846	C	T	31605846	3	4	226	1	0	0	0	0	1	0	0	0	7090	652	23	1	4923	1	HECTD1	14	31605846	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	7720380	31605846	75743694	43	14014										
ATP8B4	0	genome.wustl.edu	37	chr15	50273432	50273432	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tagagtattcatcaatctatCaatgcttgtccttttaaact	4	8	4	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	15	50273432	50273432	C	G	SNP	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	missense	c.808	p.D270H	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	186	0	0	63	62	49.6	-	-	-	G	50273432	C	G	50273432	3	3	226	1	0	0	0	0	1	0	0	0	1201	826	29	2	2842	2	ATP8B4	15	50273432	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09		50273432	52257960	44	14015										
AXIN1	0	genome.wustl.edu	37	chr16	396819	396820	+	Frame_Shift_Ins	INS	-	-	A													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cactgccctcaggctcatacINScccaggtccagatccgagcg							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	396819	396820	-	A	INS	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	frame_shift_ins	c.207_206	p.Y70fs	0.967:1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	9	0	0	29	56	65.88	-	-	-	A	396820	-	A	396819	7	5	226	1	0	1	1	0	0	0	0	0	1240	494	18	0	2421	0	AXIN1	16	396819	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09		396819	89957934	45	14016	161	2								
AXIN1	0	genome.wustl.edu	37	chr16	396824	396825	+	Frame_Shift_Ins	INS	-	-	AA													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ccctcaggctcataccccagINSgtccagatccgagcgcctcg							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	396824	396825	-	AA	INS	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	frame_shift_ins	c.202_201	p.L67fs	1.000:1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	10	0	0	18	53	74.65	-	-	-	AA	396825	-	AA	396824	7	5	226	1	0	1	1	0	0	0	0	0	1240	991	35	0	2426	0	AXIN1	16	396824	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	5	396824	89957929	46	14017	161	2								
CRYM	0	genome.wustl.edu	37	chr16	21288757	21288757	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	caggaagttgctcaccgccaGcagggtgccattgctgggct	14	12	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	21288757	21288757	G	T	SNP	CRYM	ENST00000219599	human	ensembl	69_37n	-1	known	missense	c.319	p.L107M	1.000	pfam_ODC_Mu_crystall	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	CRYM	HGNC	ENSG00000103316	27	0	0	24	20	45.45	-	-	-	T	21288757	G	T	21288757	3	4	226	1	0	0	0	0	1	0	0	0	3951	962	34	4	653	4	CRYM	16	21288757	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	20891933	21288757	69065996	47	14018										
RBBP6	0	genome.wustl.edu	37	chr16	24582883	24582883	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tgaattaacaagacgaaaagActctccttctcggaataaag	7	8	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	24582883	24582883	A	G	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.4496	p.D1499G	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	112	0	0	106	47	30.72	-	-	-	G	24582883	A	G	24582883	3	3	226	1	0	0	0	0	1	0	0	0	13186	275	10	5	4620	5	RBBP6	16	24582883	Missense_Mutation	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	3294126	24582883	65771870	48	14019										
CBFB	0	genome.wustl.edu	37	chr16	67070595	67070595	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cagttttttccggccagctgGcagggagaacagcgacaaac	12	11	0	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	67070595	67070595	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	nonsense	c.219	p.W73*	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	90	0	0	30	96	76.19	-	-	-	A	67070595	G	A	67070595	4	1	226	1	0	0	0	0	0	1	0	0	2724	1212	42	4	229	4	CBFB	16	67070595	Nonsense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	42487712	67070595	23284158	49	14020										
CDH1	0	genome.wustl.edu	37	chr16	68856129	68856129	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cattcagtacaacgacccaaGtgggtacctgagttttattt	8	9	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	68856129	68856129	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.1936+1	e12+1	0.996	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	199	0	0	94	104	52.53	-	-	-	A	68856129	G	A	68856129	5	1	226	1	0	0	0	0	0	0	1	0	3124	1043	36	4	1983	4	CDH1	16	68856129	Splice_Site	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	1785534	68856129	21498624	50	14021										
VAT1L	0	genome.wustl.edu	37	chr16	77859253	77859253	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gacatgagcttctccgaggcTgctgcattccccatgaactt	9	13	1	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	16	77859253	77859253	T	G	SNP	VAT1L	ENST00000302536	human	ensembl	69_37n	1	known	silent	c.474	p.A158	0.905	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1L	HGNC	ENSG00000171724	79	0	0	19	23	54.76	-	-	-	G	77859253	T	G	77859253	2	3	226	1	0	0	0	0	0	0	0	1	17227	1567	55	5		5	VAT1L	16	77859253	Silent	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	9003124	77859253	12495500	51	14022										
FOXN1	0	genome.wustl.edu	37	chr17	26861801	26861801	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ggctgtccgccccctgggctGtccggctcaggccccatccg	13	19	1	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	26861801	26861801	G	A	SNP	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	silent	c.1212	p.L404	0.806	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	18	0	0	12	14	53.85	-	-	-	A	26861801	G	A	26861801	2	1	226	1	0	0	0	0	0	0	0	1	6067	1364	48	4		4	FOXN1	17	26861801	Silent	SNP	G	TCGA-A8-A09W-01A-11W-A019-09		26861801	54333409	52	14023										
EFCAB5	0	genome.wustl.edu	37	chr17	28380487	28380487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tcaacaccatcaccaaacccGccagaacagcagagaggagt	8	14	2	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	28380487	28380487	G	T	SNP	EFCAB5	ENST00000588978	human	ensembl	69_37n	1	novel	missense	c.910	p.A304S	0.007	NULL	pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EFCAB5	HGNC	ENSG00000176927	447	0	0	298	180	37.58	-	-	-	T	28380487	G	T	28380487	3	4	226	1	0	0	0	0	1	0	0	0	4973	1074	38	3	1553	3	EFCAB5	17	28380487	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	1518686	28380487	52814723	53	14024										
KRT9	0	genome.wustl.edu	37	chr17	39728035	39728035	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gatcctccgccgtagctgtaGccaaaactgccaccgcctcc	8	18	0	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	39728035	39728035	G	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	silent	c.210	p.G70	0.000	NULL	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	22	0	0	17	16	48.48	-	-	-	T	39728035	G	T	39728035	2	4	226	1	0	0	0	0	0	0	0	1	8554	958	34	4		4	KRT9	17	39728035	Silent	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	11347548	39728035	41467175	54	14025										
SP6	0	genome.wustl.edu	37	chr17	45924911	45924911	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	tgcagctcgtccgagcgcgtGaagcgcttgccgcagaagag	15	12	0	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	45924911	45924911	G	A	SNP	SP6	ENST00000342234	human	ensembl	69_37n	-1	known	silent	c.885	p.F295	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120	17	0	0	6	6	50	-	-	-	A	45924911	G	A	45924911	2	1	226	1	0	0	0	0	0	0	0	1	15057	1281	45	2		2	SP6	17	45924911	Silent	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	6196876	45924911	35270299	55	14026										
NFE2L1	0	genome.wustl.edu	37	chr17	46128958	46128959	+	Frame_Shift_Ins	INS	-	-	C													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ggaggatttgggggctgtagINScccccccagtcagtggagac							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	46128958	46128959	-	C	INS	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	frame_shift_ins	c.478_479	p.V163fs	1.000:1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	22	0	0	32	4	11.11	-	-	-	C	46128959	-	C	46128958	7	5	226	1	0	1	1	0	0	0	0	0	10439	971	34	0	480	0	NFE2L1	17	46128958	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	204047	46128958	35066252	56	14027										
CLTC	0	genome.wustl.edu	37	chr17	57746199	57746199	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gacccagatgtgcactttaaAtatattcaggcagcttgcaa	8	9	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	17	57746199	57746199	A	G	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	silent	c.2190	p.K730	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	142	0	0	166	78	31.97	-	-	-	G	57746199	A	G	57746199	2	3	226	1	0	0	0	0	0	0	0	1	3596	98	4	5		5	CLTC	17	57746199	Silent	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	11617241	57746199	23449011	57	14028										
SHC2	0	genome.wustl.edu	37	chr19	434769	434769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	agcctggagtccactagcccGcccagcggcggctccttccc	11	19	0	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	434769	434769	G	A	SNP	SHC2	ENST00000590170	human	ensembl	69_37n	-1	known	missense	c.191	p.A64V	0.998	NULL	NULL	-	no_start_codon	SHC2	HGNC	ENSG00000129946	14	0	0	5	6	54.55	-	-	-	A	434769	G	A	434769	3	1	226	1	0	0	0	0	1	0	0	0	14360	1074	38	1	718	1	SHC2	19	434769	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09		434769	58694214	58	14029										
KEAP1	0	genome.wustl.edu	37	chr19	10600498	10600499	+	Frame_Shift_Ins	INS	-	-	T													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cgtgtcagcattggggccacINScaagtgccactcatcccgct							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	10600498	10600499	-	T	INS	KEAP1	ENST00000171111	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1357_1356	p.V452fs	1.000:1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	24	0	0	14	4	22.22	-	-	-	T	10600499	-	T	10600498	7	5	226	1	0	1	1	0	0	0	0	0	8194	507	18	0	529	0	KEAP1	19	10600498	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	10165729	10600498	48528485	59	14030	162	2								
KEAP1	0	genome.wustl.edu	37	chr19	10600502	10600502	+	Frame_Shift_Del	DEL	G	G	-													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gtcagcattggggccaccaaGtgccactcatcccgctctgg							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	10600502	10600502	G	-	DEL	KEAP1	ENST00000171111	human	ensembl	69_37n	-1	known	frame_shift_del	c.1353	p.L452fs	0.990	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	24	0	0	11	4	23.53	-	-	-	-	10600502	G	-	10600502	7	5	226	1	0	1	0	1	0	0	0	0	8194	1020	36	0	533	0	KEAP1	19	10600502	Frame_Shift_Del	DEL	G	TCGA-A8-A09W-01A-11W-A019-09	4	10600502	48528481	60	14031	162	2								
CD97	0	genome.wustl.edu	37	chr19	14518758	14518759	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	agtgggcctgcctagttgctINSggggggagcaagtactcaga							TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	14518758	14518759	-	G	INS	CD97	ENST00000242786	human	ensembl	69_37n	1	known	frame_shift_ins	c.2415_2416	p.S807fs	0.000:0.000	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	8	0	0	6	2	25	-	-	-	G	14518759	-	G	14518758	7	5	226	1	0	1	1	0	0	0	0	0	3078	1567	55	0	2489	0	CD97	19	14518758	Frame_Shift_Ins	INS	-	TCGA-A8-A09W-01A-11W-A019-09	3918256	14518758	44610225	61	14032										
SLC27A1	0	genome.wustl.edu	37	chr19	17597396	17597396	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ctctctgtgctgatccgcgtGcgcctggagctgcggcggca	15	14	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	17597396	17597396	G	A	SNP	SLC27A1	ENST00000252595	human	ensembl	69_37n	1	known	silent	c.192	p.V64	0.963	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304	11	0	0	6	4	40	-	-	-	A	17597396	G	A	17597396	2	1	226	1	0	0	0	0	0	0	0	1	14614	1306	46	4		4	SLC27A1	19	17597396	Silent	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	3078638	17597396	41531587	62	14033										
UNC13A	0	genome.wustl.edu	37	chr19	17741462	17741462	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gttgtgggtgggccttcttaCcccatccttcttgtctcgct	10	13	3	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	17741462	17741462	C	G	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	splice_site	c.3789+1	e30+1	1.000	-	-	-	no_errors	UNC13A	HGNC	ENSG00000130477	40	0	0	57	18	24	-	-	-	G	17741462	C	G	17741462	5	3	226	1	0	0	0	0	0	0	1	0	17081	521	18	4	1645	4	UNC13A	19	17741462	Splice_Site	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	144066	17741462	41387521	63	14034										
FCGBP	0	genome.wustl.edu	37	chr19	40367763	40367763	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ttgaggggaacacagcggtcAgcacttaacacgaaacccgc	11	12	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	40367763	40367763	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.13197	p.A4399	0.000	pfam_TIL_dom,superfamily_TIL_dom,smart_EGF-like	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	8	0	0	4	5	55.56	-	-	-	G	40367763	A	G	40367763	2	3	226	1	0	0	0	0	0	0	0	1	5824	175	7	5		5	FCGBP	19	40367763	Silent	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	22626301	40367763	18761220	64	14035										
SYMPK	0	genome.wustl.edu	37	chr19	46332318	46332318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gggagcccgaggcacctgcgGccaggtaggcgttgtactcc	16	13	0	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	46332318	46332318	G	T	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.1895	p.A632D	0.626	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	38	0	0	42	18	30	-	-	-	T	46332318	G	T	46332318	3	4	226	1	0	0	0	0	1	0	0	0	15531	1203	42	4	1985	4	SYMPK	19	46332318	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	5964555	46332318	12796665	65	14036										
CLEC11A	0	genome.wustl.edu	37	chr19	51226792	51226792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	agtccagcttaatgcaggcaGcctggcttttgggggctttg	14	9	0	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	51226792	51226792	G	A	SNP	CLEC11A	ENST00000250340	human	ensembl	69_37n	1	known	missense	c.10	p.A4T	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC11A	HGNC	ENSG00000105472	35	0	0	27	17	38.64	-	-	-	A	51226792	G	A	51226792	3	1	226	1	0	0	0	0	1	0	0	0	3526	971	34	4	12	4	CLEC11A	19	51226792	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	4894474	51226792	7902191	66	14037										
LILRA6	0	genome.wustl.edu	37	chr19	54745682	54745682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	atcccttctgtgagccacatCggagggtcatattcccccct	8	15	2	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	19	54745682	54745682	C	T	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.428	p.R143Q	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	55	0	0	40	7	14.89	-	-	-	T	54745682	C	T	54745682	3	4	226	1	0	0	0	0	1	0	0	0	8844	884	31	1	1037	1	LILRA6	19	54745682	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	3518890	54745682	4383301	67	14038										
RBM12	0	genome.wustl.edu	37	chr20	34240663	34240663	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	acacagtaaagggcatgtttTgcactttaattactgtcggt	9	7	0	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	20	34240663	34240663	T	A	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	missense	c.2582	p.Q861L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	139	0	0	115	39	25.32	-	-	-	A	34240663	T	A	34240663	3	1	226	1	0	0	0	0	1	0	0	0	13196	1812	63	5	220	5	RBM12	20	34240663	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09		34240663	28784857	68	14039										
PIR	0	genome.wustl.edu	37	chrX	15474117	15474117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aacccacagttgtaggccatGggctggctcctctgagcaag	12	12	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	15474117	15474117	G	C	SNP	PIR	ENST00000380420	human	ensembl	69_37n	-1	known	missense	c.334	p.H112D	0.999	pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	pfam_Pirin_C_dom,pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	-	no_errors	PIR	HGNC	ENSG00000087842	323	0	0	90	103	53.37	-	-	-	C	15474117	G	C	15474117	3	2	226	1	0	0	0	0	1	0	0	0	12018	1348	47	4	562	4	PIR	23	15474117	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09		15474117	139796443	69	14040										
DDX53	0	genome.wustl.edu	37	chrX	23019754	23019754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	actgattacaactgatatagTatcccgaggtcttgatctta	7	8	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	23019754	23019754	T	G	SNP	DDX53	ENST00000327968	human	ensembl	69_37n	1	known	missense	c.1580	p.V527G	0.992	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735	381	0	0	142	119	45.59	-	-	-	G	23019754	T	G	23019754	3	3	226	1	0	0	0	0	1	0	0	0	4402	1638	57	5	1582	5	DDX53	23	23019754	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	7545637	23019754	132250806	70	14041										
FAM47C	0	genome.wustl.edu	37	chrX	37028375	37028375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gactggagtgtcccatctccGcccagagcctcccaagactc	9	17	1	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	37028375	37028375	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.1892	p.R631H	0.024	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	233	0	0	81	103	55.68	-	-	-	A	37028375	G	A	37028375	3	1	226	1	0	0	0	0	1	0	0	0	5617	1087	38	1	1894	1	FAM47C	23	37028375	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	14008621	37028375	118242185	71	14042										
WDR13	0	genome.wustl.edu	37	chrX	48457210	48457210	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	aaggctgggcaccccccagcGctgcgtcggcagtacctgag	14	15	0	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	48457210	48457210	G	A	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	silent	c.147	p.A49	0.709	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	24	0	0	13	6	31.58	-	-	-	A	48457210	G	A	48457210	2	1	226	1	0	0	0	0	0	0	0	1	17372	1074	38	1		1	WDR13	23	48457210	Silent	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	11428835	48457210	106813350	72	14043										
PAGE1	0	genome.wustl.edu	37	chrX	49454040	49454040	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ccttcctcaggtgttttcacCtcctctggatttggcaggcc	9	14	3	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	49454040	49454040	C	T	SNP	PAGE1	ENST00000376150	human	ensembl	69_37n	-1	known	silent	c.399	p.E133	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985	543	0	0	444	223	33.43	-	-	-	T	49454040	C	T	49454040	2	4	226	1	0	0	0	0	0	0	0	1	11462	680	24	4		4	PAGE1	23	49454040	Silent	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	996830	49454040	105816520	73	14044										
DGAT2L6	0	genome.wustl.edu	37	chrX	69397492	69397492	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	caaaccttctttgttttgcaAtggatcccagtctatatatt	5	9	2	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	69397492	69397492	A	G	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	silent	c.60	p.Q20	0.000	NULL	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	229	0	0	143	63	30.58	-	-	-	G	69397492	A	G	69397492	2	3	226	1	0	0	0	0	0	0	0	1	4495	98	4	5		5	DGAT2L6	23	69397492	Silent	SNP	A	TCGA-A8-A09W-01A-11W-A019-09	19943452	69397492	85873068	74	14045										
ZCCHC5	0	genome.wustl.edu	37	chrX	77913268	77913268	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	actctgaagctgctgatgtcTccacaactattagaccctcc	6	14	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	77913268	77913268	T	A	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	missense	c.650	p.E217V	0.001	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	133	1	0.75	77	38	32.76	-	-	-	A	77913268	T	A	77913268	3	1	226	1	0	0	0	0	1	0	0	0	17687	1551	54	5	781	5	ZCCHC5	23	77913268	Missense_Mutation	SNP	T	TCGA-A8-A09W-01A-11W-A019-09	8515776	77913268	77357292	75	14046										
BRWD3	0	genome.wustl.edu	37	chrX	79990631	79990631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cagttttacacataccagaaCtgaaagatgaacaagatatc	6	8	0	5			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	79990631	79990631	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.980	p.S327N	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	171	0	0	145	71	32.87	-	-	-	T	79990631	C	T	79990631	3	4	226	1	0	0	0	0	1	0	0	0	1534	565	20	4	4556	4	BRWD3	23	79990631	Missense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	2077363	79990631	75279929	76	14047										
PCDH11X	0	genome.wustl.edu	37	chrX	91873468	91873468	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	cacagcccacgagtgacacaGaccattgctctctgccacag	8	16	1	2			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	91873468	91873468	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3573	p.Q1191H	0.674	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	464	0	0	216	125	36.66	-	-	-	T	91873468	G	T	91873468	3	4	226	1	0	0	0	0	1	0	0	0	11581	933	33	2	3721	2	PCDH11X	23	91873468	Missense_Mutation	SNP	G	TCGA-A8-A09W-01A-11W-A019-09	11882837	91873468	63397092	77	14048										
LRCH2	0	genome.wustl.edu	37	chrX	114400906	114400906	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	ttggataaaaatcttccataCtatggaaatagaaatcctaa	5	6	1	1			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	114400906	114400906	C	A	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	splice_site	c.999-1	e7-1	1.000	-	-	-	no_errors	LRCH2	HGNC	ENSG00000130224	49	0	0	34	19	35.85	-	-	-	A	114400906	C	A	114400906	5	1	226	1	0	0	0	0	0	0	1	0	8999	579	20	4	1359	4	LRCH2	23	114400906	Splice_Site	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	22527438	114400906	40869654	78	14049										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685656	125685656	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	gacatatcatcacagtaggtCaggcacacattatcccggaa	8	11	3	0			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	125685656	125685656	C	G	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	silent	c.936	p.L312	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	30	0	0	7	7	50	-	-	-	G	125685656	C	G	125685656	2	3	226	1	0	0	0	0	0	0	0	1	4296	813	29	2		2	DCAF12L1	23	125685656	Silent	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	11284750	125685656	29584904	79	14050										
FMR1NB	0	genome.wustl.edu	37	chrX	147084783	147084783	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	6	0.579136110965376	1.37430167597765	2.39621830683283	0.741686618781591	0.608391608391609	1	0	acagtgaaaatgctcatggcCaatctctggaagaagattcc	9	9	2	3			TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a2690ce-485f-4d4f-9673-d86f91be27a4	e6862e84-130f-487b-8d60-43c783d2a8bf	X	147084783	147084783	C	T	SNP	FMR1NB	ENST00000370467	human	ensembl	69_37n	1	known	nonsense	c.340	p.Q114*	0.000	NULL	superfamily_P_trefoil	-	no_errors	FMR1NB	HGNC	ENSG00000176988	290	0	0	323	163	33.47	-	-	-	T	147084783	C	T	147084783	4	4	226	1	0	0	0	0	0	1	0	0	6007	595	21	4	346	4	FMR1NB	23	147084783	Nonsense_Mutation	SNP	C	TCGA-A8-A09W-01A-11W-A019-09	21399127	147084783	8185777	80	14051										
SCNM1	0	genome.wustl.edu	37	chr1	151138644	151138644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcgtgatgtctttcaagaggGaaggagacgattggagtcaa	14	5	3	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	1	151138644	151138644	G	A	SNP	SCNM1	ENST00000368905	human	ensembl	69_37n	1	known	missense	c.16	p.E6K	1.000	NULL	NULL	-	no_errors	SCNM1	HGNC	ENSG00000163156	13	0	0	10	13	56.52	-	-	-	A	151138644	G	A	151138644	3	1	227	1	0	0	0	0	1	0	0	0	14014	1175	41	2	18	2	SCNM1	1	151138644	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09		151138644	98111977	1	14052										
C1orf114	0	genome.wustl.edu	37	chr1	169391389	169391389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	actatctgaatctgatatggGatccaaaggttgaatacctg	9	7	2	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	1	169391389	169391389	G	A	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.280	p.P94S	0.918	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	309	0	0	246	30	10.79	-	-	-	A	169391389	G	A	169391389	3	1	227	1	0	0	0	0	1	0	0	0	2006	1174	41	2	1262	2	C1orf114	1	169391389	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	18252745	169391389	79859232	2	14053										
ASXL2	0	genome.wustl.edu	37	chr2	25976464	25976464	+	Nonsense_Mutation	SNP	C	C	A													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	ctccacttttttctccttctCaatctcttgtcgaattctca							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	25976464	25976464	C	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	nonsense	c.1081	p.E361*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	622	0	0	264	66	20	-	-	-	A	25976464	C	A	25976464	4	1	227	1	0	0	0	0	0	1	0	0	1071	835	29	2	3238	2	ASXL2	2	25976464	Nonsense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		25976464	217222909	3	14054	163	2								
ASXL2	0	genome.wustl.edu	37	chr2	25976465	25976465	+	Silent	SNP	A	A	T													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tccacttttttctccttctcAatctcttgtcgaattctcac							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	25976465	25976465	A	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	silent	c.1080	p.I360	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	619	0	0	264	64	19.51	-	-	-	T	25976465	A	T	25976465	2	4	227	1	0	0	0	0	0	0	0	1	1071	126	5	5		5	ASXL2	2	25976465	Silent	SNP	A	TCGA-A8-A09X-01A-11W-A019-09	1	25976465	217222908	4	14055	163	2								
MAP4K4	0	genome.wustl.edu	37	chr2	102504327	102504327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tgtgctatgaagatgaggggGtttatgtaaacacatatgga	13	3	0	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	102504327	102504327	G	T	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.3667	p.V1223F	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	380	0	0	242	61	20.13	-	-	-	T	102504327	G	T	102504327	3	4	227	1	0	0	0	0	1	0	0	0	9333	1261	44	4	3809	4	MAP4K4	2	102504327	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	76527862	102504327	140695046	5	14056										
GPR155	0	genome.wustl.edu	37	chr2	175324714	175324714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tttgtggctctgagactgatCgaaaccttcatagcttcctg	9	10	2	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	175324714	175324714	C	A	SNP	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	missense	c.1663	p.D555Y	0.990	NULL	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328	177	0	0	131	24	15.48	-	-	-	A	175324714	C	A	175324714	3	1	227	1	0	0	0	0	1	0	0	0	6710	884	31	3	977	3	GPR155	2	175324714	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	72820387	175324714	67874659	6	14057										
STAT4	0	genome.wustl.edu	37	chr2	191919242	191919242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcctttacctccagcactggActtcatttcctttggttgct	6	13	1	0			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	191919242	191919242	A	G	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.1225	p.S409P	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	446	1	0.22	241	80	24.92	-	-	-	G	191919242	A	G	191919242	3	3	227	1	0	0	0	0	1	0	0	0	15358	275	10	5	1065	5	STAT4	2	191919242	Missense_Mutation	SNP	A	TCGA-A8-A09X-01A-11W-A019-09	16594528	191919242	51280131	7	14058										
PRR21	0	genome.wustl.edu	37	chr2	240982243	240982243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	agggccgtgggtgaagagccGtggatgaagggccatgggtg	21	6	0	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	2	240982243	240982243	G	A	SNP	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	missense	c.157	p.R53W	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	27	0	0	68	10	12.82	-	-	-	A	240982243	G	A	240982243	3	1	227	1	0	0	0	0	1	0	0	0	12673	1144	40	1	1015	1	PRR21	2	240982243	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	49063001	240982243	2217130	8	14059										
GPD1L	0	genome.wustl.edu	37	chr3	32180207	32180207	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	cccaagaaagcgctgggaatCaccctcatcaaggtaactcg	9	13	3	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	3	32180207	32180207	C	T	SNP	GPD1L	ENST00000428684	human	ensembl	69_37n	1	known	missense	c.176	p.S59L	0.999	NULL	NULL	-	no_errors	GPD1L	HGNC	ENSG00000152642	202	0	0	147	57	27.94	-	-	-	T	32180207	C	T	32180207	3	4	227	1	0	0	0	0	1	0	0	0	6655	816	29	2	364	2	GPD1L	3	32180207	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		32180207	165842223	9	14060										
B4GALT4	0	genome.wustl.edu	37	chr3	118942945	118942945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gccaaccaccagatgcttggGatgctcctcacacttgtaaa	8	13	1	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	3	118942945	118942945	G	A	SNP	B4GALT4	ENST00000359213	human	ensembl	69_37n	-1	known	missense	c.634	p.P212S	1.000	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT4	HGNC	ENSG00000121578	159	0	0	80	29	26.61	-	-	-	A	118942945	G	A	118942945	3	1	227	1	0	0	0	0	1	0	0	0	1277	1174	41	2	416	2	B4GALT4	3	118942945	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	86762738	118942945	79079485	10	14061										
MBNL1	0	genome.wustl.edu	37	chr3	152150507	152150507	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	cttttattttatttttcagcCaatgttttcagttgcaccaa	4	8	2	0			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	3	152150507	152150507	C	T	SNP	MBNL1	ENST00000464596	human	ensembl	69_37n	1	novel	nonsense	c.343	p.Q115*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MBNL1	HGNC	ENSG00000152601	566	0	0	265	91	25.56	-	-	-	T	152150507	C	T	152150507	4	4	227	1	0	0	0	0	0	1	0	0	9424	608	21	4	357	4	MBNL1	3	152150507	Nonsense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	33207562	152150507	45871923	11	14062										
PPM1L	0	genome.wustl.edu	37	chr3	160783285	160783285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	ctgtgtgacaaagatgggaaCgctattcctttgtctcatga	10	8	1	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	3	160783285	160783285	C	T	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	1	known	silent	c.669	p.N223	0.796	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	314	1	0.32	209	63	23.16	-	-	-	T	160783285	C	T	160783285	2	4	227	1	0	0	0	0	0	0	0	1	12421	535	19	1		1	PPM1L	3	160783285	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	8632778	160783285	37239145	12	14063										
SEL1L3	0	genome.wustl.edu	37	chr4	25831746	25831746	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gtctgattgtggtagcttttCaaatcctgtccaatgctagt	9	8	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	4	25831746	25831746	C	G	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.1131	p.L377F	0.999	superfamily_ConA-like_lec_gl	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	80	0	0	48	18	26.87	-	-	-	G	25831746	C	G	25831746	3	3	227	1	0	0	0	0	1	0	0	0	14100	825	29	2	2343	2	SEL1L3	4	25831746	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		25831746	165322530	13	14064										
ATP10D	0	genome.wustl.edu	37	chr4	47525064	47525064	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	cattgaccgatgctggaaagAcgttactgttggggacttta	12	7	0	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	4	47525064	47525064	A	T	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.521	p.D174V	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	174	0	0	94	19	16.81	-	-	-	T	47525064	A	T	47525064	3	4	227	1	0	0	0	0	1	0	0	0	1122	275	10	5	531	5	ATP10D	4	47525064	Missense_Mutation	SNP	A	TCGA-A8-A09X-01A-11W-A019-09	21693318	47525064	143629212	14	14065										
MCTP1	0	genome.wustl.edu	37	chr5	94620064	94620064	+	Frame_Shift_Del	DEL	A	A	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	ctccacctgctgcctgcaccActccccctggccggtgcatt							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	5	94620064	94620064	A	-	DEL	MCTP1	ENST00000515393	human	ensembl	69_37n	-1	known	frame_shift_del	c.216	p.S72fs	0.000	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	12	0	0	2	2	40	-	-	-	-	94620064	A	-	94620064	7	5	227	1	0	1	0	1	0	0	0	0	9471	156	6	0	2936	0	MCTP1	5	94620064	Frame_Shift_Del	DEL	A	TCGA-A8-A09X-01A-11W-A019-09		94620064	86295196	15	14066										
C5orf20	0	genome.wustl.edu	37	chr5	134782595	134782595	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gttttgttcctccctggaggGtagagaccctcactgaggcc	12	12	1	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	5	134782595	134782595	G	T	SNP	C5orf20	ENST00000503143	human	ensembl	69_37n	-1	known	nonsense	c.204	p.Y68*	0.002	NULL	NULL	-	no_errors	C5orf20	HGNC	ENSG00000251380	92	0	0	52	6	10.34	-	-	-	T	134782595	G	T	134782595	4	4	227	1	0	0	0	0	0	1	0	0	2305	1256	44	4	534	4	C5orf20	5	134782595	Nonsense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	40162531	134782595	46132665	16	14067										
DOCK4	0	genome.wustl.edu	37	chr7	111409677	111409677	+	Frame_Shift_Del	DEL	G	G	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gtaggtcaggaactccctgaGgggccgatcagaccattcca							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	7	111409677	111409677	G	-	DEL	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	frame_shift_del	c.3736	p.L1246fs	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	83	0	0	72	21	22.11	-	-	-	-	111409677	G	-	111409677	7	5	227	1	0	1	0	1	0	0	0	0	4724	1000	35	0	2259	0	DOCK4	7	111409677	Frame_Shift_Del	DEL	G	TCGA-A8-A09X-01A-11W-A019-09		111409677	47728986	17	14068										
GIMAP5	0	genome.wustl.edu	37	chr7	150440110	150440111	+	Frame_Shift_Ins	INS	-	-	T													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tctattgttgtgcagcatacINStttttttcattatttttctg							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	7	150440110	150440111	-	T	INS	GIMAP5	ENST00000358647	human	ensembl	69_37n	1	known	frame_shift_ins	c.883_884	p.I298fs	0.000:0.002	NULL	pfam_AIG1	-	no_errors	GIMAP5	HGNC	ENSG00000196329	245	0	0	236	71	23.13	-	-	-	T	150440111	-	T	150440110	7	5	227	1	0	1	1	0	0	0	0	0	6434	565	20	0	889	0	GIMAP5	7	150440110	Frame_Shift_Ins	INS	-	TCGA-A8-A09X-01A-11W-A019-09	39030433	150440110	8698553	18	14069										
ZFPM2	0	genome.wustl.edu	37	chr8	106646553	106646553	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gacttggcaaggagtggaagAcaacaaaaacaactgcattg	11	7	0	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	8	106646553	106646553	A	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.500	p.D167V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	96	0	0	46	14	22.95	-	-	-	T	106646553	A	T	106646553	3	4	227	1	0	0	0	0	1	0	0	0	17754	275	10	5	518	5	ZFPM2	8	106646553	Missense_Mutation	SNP	A	TCGA-A8-A09X-01A-11W-A019-09		106646553	39717469	19	14070										
GNE	0	genome.wustl.edu	37	chr9	36217532	36217532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	actggccaggactccggagaGgatcacaagggagggattca	15	9	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	9	36217532	36217532	G	T	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.2092	p.L698I	1.000	NULL	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	150	0	0	132	31	19.02	-	-	-	T	36217532	G	T	36217532	3	4	227	1	0	0	0	0	1	0	0	0	6574	1000	35	4	173	4	GNE	9	36217532	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09		36217532	104995899	20	14071										
ZBTB5	0	genome.wustl.edu	37	chr9	37441772	37441772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gtgccaaaagactgatcaaaCatgatcgcactatcttcctg	7	11	2	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	9	37441772	37441772	C	T	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.777	p.M259I	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	118	0	0	118	35	22.88	-	-	-	T	37441772	C	T	37441772	3	4	227	1	0	0	0	0	1	0	0	0	17647	478	17	4	1260	4	ZBTB5	9	37441772	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	1224240	37441772	103771659	21	14072										
TSTD2	0	genome.wustl.edu	37	chr9	100368473	100368473	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcaagaaggatagtatcactTtgttcttgatttgcctgaga	9	6	3	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	9	100368473	100368473	T	C	SNP	TSTD2	ENST00000341170	human	ensembl	69_37n	-1	known	silent	c.906	p.Q302	0.630	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925	169	0	0	147	28	16	-	-	-	C	100368473	T	C	100368473	2	2	227	1	0	0	0	0	0	0	0	1	16772	1838	64	5		5	TSTD2	9	100368473	Silent	SNP	T	TCGA-A8-A09X-01A-11W-A019-09	62926701	100368473	40844958	22	14073										
SVEP1	0	genome.wustl.edu	37	chr9	113312283	113312283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	atctccactcctgaatctcgCagtgacgctgcaattggtct	8	13	3	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	9	113312283	113312283	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.633	p.L211	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	281	0	0	187	48	20.43	-	-	-	T	113312283	C	T	113312283	2	4	227	1	0	0	0	0	0	0	0	1	15511	697	25	4		4	SVEP1	9	113312283	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	12943810	113312283	27901148	23	14074										
WDR38	0	genome.wustl.edu	37	chr9	127619109	127619109	+	Frame_Shift_Del	DEL	A	A	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gtcacctgggtgaagagcatAgccttctctcccgacgagct							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	9	127619109	127619109	A	-	DEL	WDR38	ENST00000373574	human	ensembl	69_37n	1	known	frame_shift_del	c.717	p.I239fs	0.982	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR38	HGNC	ENSG00000136918	35	0	0	18	9	33.33	-	-	-	-	127619109	A	-	127619109	7	5	227	1	0	1	0	1	0	0	0	0	17389	410	15	0	743	0	WDR38	9	127619109	Frame_Shift_Del	DEL	A	TCGA-A8-A09X-01A-11W-A019-09	14306826	127619109	13594322	24	14075										
PLCE1	0	genome.wustl.edu	37	chr10	96018635	96018635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	agcttcatggtttcagatagCaacatgagttttgttgaatt	9	5	2	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	10	96018635	96018635	C	T	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	silent	c.3633	p.S1211	0.993	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	283	0	0	172	58	25.22	-	-	-	T	96018635	C	T	96018635	2	4	227	1	0	0	0	0	0	0	0	1	12108	709	25	4		4	PLCE1	10	96018635	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		96018635	39516112	25	14076										
FGFR2	0	genome.wustl.edu	37	chr10	123256149	123256149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gaacacggttaatgtcatagGagtactccatcccgggtggc	12	10	1	0			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	10	123256149	123256149	G	C	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1763	p.S588C	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	341	0	0	292	105	26.45	-	-	-	C	123256149	G	C	123256149	3	2	227	1	0	0	0	0	1	0	0	0	5912	1174	41	2	833	2	FGFR2	10	123256149	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	27237514	123256149	12278598	26	14077										
C11orf16	0	genome.wustl.edu	37	chr11	8947244	8947244	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	agcgtgcattgctactttctCctctttaggaccttccaggg	9	12	2	0			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	11	8947244	8947244	C	A	SNP	C11orf16	ENST00000326053	human	ensembl	69_37n	-1	known	nonsense	c.970	p.E324*	0.000	NULL	NULL	-	no_errors	C11orf16	HGNC	ENSG00000176029	64	0	0	67	8	10.67	-	-	-	A	8947244	C	A	8947244	4	1	227	1	0	0	0	0	0	1	0	0	1641	864	30	2	441	2	C11orf16	11	8947244	Nonsense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		8947244	126059272	27	14078										
KIF18A	0	genome.wustl.edu	37	chr11	28119324	28119324	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	acattttgatttgtagttttCtttccatggaaaaaactgac	6	6	1	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	11	28119324	28119324	C	A	SNP	KIF18A	ENST00000263181	human	ensembl	69_37n	-1	known	missense	c.171	p.K57N	0.998	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621	191	0	0	165	38	18.72	-	-	-	A	28119324	C	A	28119324	3	1	227	1	0	0	0	0	1	0	0	0	8332	912	32	2	2589	2	KIF18A	11	28119324	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	19172080	28119324	106887192	28	14079										
PPP2R5B	0	genome.wustl.edu	37	chr11	64695334	64695334	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	accctgaatttgaccctgaaGaggatgagcccaatcttgag	10	10	1	6			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	11	64695334	64695334	G	C	SNP	PPP2R5B	ENST00000164133	human	ensembl	69_37n	1	known	missense	c.457	p.E153Q	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	52	0	0	42	16	27.59	-	-	-	C	64695334	G	C	64695334	3	2	227	1	0	0	0	0	1	0	0	0	12470	943	33	2	467	2	PPP2R5B	11	64695334	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	36576010	64695334	70311182	29	14080										
RAB30	0	genome.wustl.edu	37	chr11	82693237	82693237	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	ttacaacaagtcaaatagctGatgcttttcccttctccagg	6	11	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	11	82693237	82693237	G	A	SNP	RAB30	ENST00000260056	human	ensembl	69_37n	-1	known	silent	c.582	p.I194	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB30	HGNC	ENSG00000137502	154	0	0	104	45	30.2	-	-	-	A	82693237	G	A	82693237	2	1	227	1	0	0	0	0	0	0	0	1	13002	1280	45	2		2	RAB30	11	82693237	Silent	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	17997903	82693237	52313279	30	14081										
NOP2	0	genome.wustl.edu	37	chr12	6672822	6672822	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gggcagcacaaatggttcctCatccacattgatctgcaggc	10	12	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	12	6672822	6672822	C	T	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.646	p.E216K	0.919	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	86	0	0	72	11	13.1	-	-	-	T	6672822	C	T	6672822	3	4	227	1	0	0	0	0	1	0	0	0	10610	835	29	2	1832	2	NOP2	12	6672822	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		6672822	127179073	31	14082										
CIT	0	genome.wustl.edu	37	chr12	120189920	120189920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	cagctctgtcttcgcctggcGaagctggctctccagggccg	13	15	3	0			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	12	120189920	120189920	G	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.2713	p.R905C	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	45	0	0	27	15	35.71	-	-	-	A	120189920	G	A	120189920	3	1	227	1	0	0	0	0	1	0	0	0	3468	1058	37	1	3474	1	CIT	12	120189920	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	113517098	120189920	13661975	32	14083										
EP400	0	genome.wustl.edu	37	chr12	132522231	132522231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	catcttttgtttgcaggcttGtgagtggcaattccattgaa	10	7	1	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	12	132522231	132522231	G	C	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.6064	p.V2022L	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	48	0	0	109	85	43.81	-	-	-	C	132522231	G	C	132522231	3	2	227	1	0	0	0	0	1	0	0	0	5186	1377	48	4	6071	4	EP400	12	132522231	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	12332311	132522231	1329664	33	14084										
OR4K1	0	genome.wustl.edu	37	chr14	20404131	20404131	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	ggttgcatggcccagatattCgttcttcacagttttgttgg	11	8	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	14	20404131	20404131	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	69_37n	1	known	silent	c.306	p.F102	0.037	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	716	0	0	460	60	11.49	-	-	-	T	20404131	C	T	20404131	2	4	227	1	0	0	0	0	0	0	0	1	11140	883	31	1		1	OR4K1	14	20404131	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		20404131	86945409	34	14085										
PRMT5	0	genome.wustl.edu	37	chr14	23395473	23395473	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	aagccagcgatcaatgacatGattagatgggaggtcagccc	12	9	2	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	14	23395473	23395473	G	A	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	missense	c.646	p.H216Y	1.000	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	297	2	0.67	256	65	20.19	-	-	-	A	23395473	G	A	23395473	3	1	227	1	0	0	0	0	1	0	0	0	12620	1290	45	2	1311	2	PRMT5	14	23395473	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	2991342	23395473	83954067	35	14086										
SCFD1	0	genome.wustl.edu	37	chr14	31144222	31144222	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	actccttgagaaaaaaagacTtattgatctccatacaaatg	5	8	1	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	14	31144222	31144222	T	G	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	1	known	missense	c.1193	p.L398R	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	212	0	0	124	31	19.87	-	-	-	G	31144222	T	G	31144222	3	3	227	1	0	0	0	0	1	0	0	0	13976	1609	56	5	1247	5	SCFD1	14	31144222	Missense_Mutation	SNP	T	TCGA-A8-A09X-01A-11W-A019-09	7748749	31144222	76205318	36	14087										
PNN	0	genome.wustl.edu	37	chr14	39648666	39648666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	agtcacagagaaaaatgaacGgtaagtatgcgaagaggtcc	12	6	1	3			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	14	39648666	39648666	G	A	SNP	PNN	ENST00000216832	human	ensembl	69_37n	1	known	missense	c.793	p.A265T	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941	58	0	0	91	22	19.47	-	-	-	A	39648666	G	A	39648666	3	1	227	1	0	0	0	0	1	0	0	0	12234	1130	39	1	823	1	PNN	14	39648666	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	8504444	39648666	67700874	37	14088										
GCH1	0	genome.wustl.edu	37	chr14	55310747	55310747	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	aatgaagctcagctcctaatGagagtcaggaactcttcccg	9	11	3	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	14	55310747	55310747	G	A	SNP	GCH1	ENST00000395514	human	ensembl	69_37n	-1	known	silent	c.741	p.L247	1.000	tigrfam_GTP_CycHdrlase_I	pfam_GTP_CycHdrlase_I/CN_OxRdtase,tigrfam_GTP_CycHdrlase_I	-	no_errors	GCH1	HGNC	ENSG00000131979	603	1	0.16	304	74	19.58	-	-	-	A	55310747	G	A	55310747	2	1	227	1	0	0	0	0	0	0	0	1	6341	1277	45	2		2	GCH1	14	55310747	Silent	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	15662081	55310747	52038793	38	14089										
CDH1	0	genome.wustl.edu	37	chr16	68845625	68845625	+	Frame_Shift_Del	DEL	G	G	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcacagccacagacgcggacGatgatgtgaacacctacaat							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	16	68845625	68845625	G	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.871	p.D291fs	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	171	0	0	78	32	28.32	-	-	-	-	68845625	G	-	68845625	7	5	227	1	0	1	0	1	0	0	0	0	3124	1058	37	0	897	0	CDH1	16	68845625	Frame_Shift_Del	DEL	G	TCGA-A8-A09X-01A-11W-A019-09		68845625	21509128	39	14090										
TP53	0	genome.wustl.edu	37	chr17	7577543	7577543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gtgaggatgggcctccggttCatgccgcccatgcaggaact	14	12	1	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	17	7577543	7577543	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.738	p.M246I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	62	0	0	51	19	27.14	-	-	-	T	7577543	C	T	7577543	3	4	227	1	0	0	0	0	1	0	0	0	16477	826	29	2	552	2	TP53	17	7577543	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		7577543	73617667	40	14091										
RGS9	0	genome.wustl.edu	37	chr17	63185416	63185416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcttacagaaacaaacagtcGttgctgtcaaaaaagaggta	8	7	2	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	17	63185416	63185416	G	A	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	missense	c.667	p.V223I	0.002	superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	76	0	0	46	11	19.3	-	-	-	A	63185416	G	A	63185416	3	1	227	1	0	0	0	0	1	0	0	0	13397	1145	40	1	705	1	RGS9	17	63185416	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	55607873	63185416	18009794	41	14092										
TMEM104	0	genome.wustl.edu	37	chr17	72786401	72786401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gttctcatccgggacaactaCgagcgggcagagaagcggcc	14	12	1	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	17	72786401	72786401	C	T	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	silent	c.312	p.Y104	0.992	NULL	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	122	0	0	110	32	22.22	-	-	-	T	72786401	C	T	72786401	2	4	227	1	0	0	0	0	0	0	0	1	16113	547	19	1		1	TMEM104	17	72786401	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	9600985	72786401	8408809	42	14093										
ZNF532	0	genome.wustl.edu	37	chr18	56586482	56586482	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	cctgaatcccagaatctcatCgacgggaccaaaaaaccatc	6	14	1	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	18	56586482	56586482	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	silent	c.963	p.I321	0.888	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	905	1	0.11	341	140	29.11	-	-	-	T	56586482	C	T	56586482	2	4	227	1	0	0	0	0	0	0	0	1	18068	874	31	1		1	ZNF532	18	56586482	Silent	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		56586482	21490766	43	14094										
ZNF266	0	genome.wustl.edu	37	chr19	9524313	9524313	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	aaagggcttctctccagtgtGaattctcaaatgtccactaa	7	10	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	19	9524313	9524313	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	69_37n	-1	known	missense	c.1288	p.H430Y	0.996	smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652	235	0	0	155	20	11.43	-	-	-	A	9524313	G	A	9524313	3	1	227	1	0	0	0	0	1	0	0	0	17901	1290	45	2	365	2	ZNF266	19	9524313	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09		9524313	49604670	44	14095										
OR10H1	0	genome.wustl.edu	37	chr19	15918448	15918448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gccccgcgggctcatgagcaCgttgtagcgcagggggtggc	18	12	1	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	19	15918448	15918448	C	T	SNP	OR10H1	ENST00000334920	human	ensembl	69_37n	-1	known	missense	c.400	p.V134M	0.128	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H1	HGNC	ENSG00000186723	87	0	0	82	25	23.36	-	-	-	T	15918448	C	T	15918448	3	4	227	1	0	0	0	0	1	0	0	0	10978	536	19	1	560	1	OR10H1	19	15918448	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	6394135	15918448	43210535	45	14096										
ARHGAP33	0	genome.wustl.edu	37	chr19	36268582	36268582	+	Frame_Shift_Del	DEL	G	G	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	agcctggatggcccaggggaGggctcggtgcagcctctacc							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	19	36268582	36268582	G	-	DEL	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	frame_shift_del	c.42	p.G15fs	0.966	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	9	0	0	5	3	37.5	-	-	-	-	36268582	G	-	36268582	7	5	227	1	0	1	0	1	0	0	0	0	884	991	35	0	48	0	ARHGAP33	19	36268582	Frame_Shift_Del	DEL	G	TCGA-A8-A09X-01A-11W-A019-09	20350134	36268582	22860401	46	14097										
MACROD2	0	genome.wustl.edu	37	chr20	15866446	15866446	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gaagaggatgttgaaatgaaAgaagattcaggtattaaatt	11	1	1	5			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	20	15866446	15866446	A	G	SNP	MACROD2	ENST00000310348	human	ensembl	69_37n	1	known	silent	c.765	p.K255	0.999	NULL	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD2	HGNC	ENSG00000172264	534	0	0	297	98	24.75	-	-	-	G	15866446	A	G	15866446	2	3	227	1	0	0	0	0	0	0	0	1	9213	69	3	5		5	MACROD2	20	15866446	Silent	SNP	A	TCGA-A8-A09X-01A-11W-A019-09		15866446	47159074	47	14098										
MYLK2	0	genome.wustl.edu	37	chr20	30419874	30419874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	acctggcggagaaagccaaaCgctgtaaccgacgccttaag	11	12	0	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	20	30419874	30419874	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	missense	c.1645	p.R549C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	19	0	0	22	6	21.43	-	-	-	T	30419874	C	T	30419874	3	4	227	1	0	0	0	0	1	0	0	0	10129	536	19	1	1687	1	MYLK2	20	30419874	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	14553428	30419874	32605646	48	14099										
STAU1	0	genome.wustl.edu	37	chr20	47734890	47734890	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tagtcccattttcatccccaGagccaggttcaaaaaaggtt	7	11	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	20	47734890	47734890	G	A	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.1169	p.S390F	1.000	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	66	0	0	51	8	13.56	-	-	-	A	47734890	G	A	47734890	3	1	227	1	0	0	0	0	1	0	0	0	15363	942	33	2	584	2	STAU1	20	47734890	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	17315016	47734890	15290630	49	14100										
ADAMTS1	0	genome.wustl.edu	37	chr21	28210587	28210587	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tggaattgtgatgatatcatGatatccaggtctgcaggtga	12	5	2	4			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	21	28210587	28210587	G	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	missense	c.2215	p.H739N	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	72	0	0	54	10	15.62	-	-	-	T	28210587	G	T	28210587	3	4	227	1	0	0	0	0	1	0	0	0	255	1290	45	2	692	2	ADAMTS1	21	28210587	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09		28210587	19919308	50	14101										
DCAF8L1	0	genome.wustl.edu	37	chrX	27997690	27997690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tcgatcttggccctcctcctCggatgtatctgaggtgctgg	12	12	2	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	X	27997690	27997690	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.1762	p.E588K	0.782	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	280	0	0	164	38	18.72	-	-	-	T	27997690	C	T	27997690	3	4	227	1	0	0	0	0	1	0	0	0	4309	893	31	1	44	1	DCAF8L1	23	27997690	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09		27997690	127272870	51	14102										
DMD	0	genome.wustl.edu	37	chrX	31462683	31462683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tgcccaaagtggtaagctggCgagcaaggtcattgacgtgg	15	8	1	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	X	31462683	31462683	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.8999	p.R3000H	0.987	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	187	1	0.53	160	31	16.23	-	-	-	T	31462683	C	T	31462683	3	4	227	1	0	0	0	0	1	0	0	0	4616	768	27	1	2252	1	DMD	23	31462683	Missense_Mutation	SNP	C	TCGA-A8-A09X-01A-11W-A019-09	3464993	31462683	123807877	52	14103										
DMD	0	genome.wustl.edu	37	chrX	32481659	32481659	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tctttatcttctgcccacctTcattgacactgtttagactg	5	12	4	2			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	X	32481659	32481659	T	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.3329	p.E1110A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	95	0	0	49	12	19.67	-	-	-	G	32481659	T	G	32481659	3	3	227	1	0	0	0	0	1	0	0	0	4616	1783	62	5	8191	5	DMD	23	32481659	Missense_Mutation	SNP	T	TCGA-A8-A09X-01A-11W-A019-09	1018976	32481659	122788901	53	14104										
GPR112	0	genome.wustl.edu	37	chrX	135455156	135455156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	gctggctttggctgtgctgcGgggggaccacacgtttgatg	17	9	0	1			TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	X	135455156	135455156	G	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.7709	p.R2570Q	0.013	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	1076	3	0.28	501	216	30.13	-	-	-	A	135455156	G	A	135455156	3	1	227	1	0	0	0	0	1	0	0	0	6679	1116	39	1	7755	1	GPR112	23	135455156	Missense_Mutation	SNP	G	TCGA-A8-A09X-01A-11W-A019-09	102973497	135455156	19815404	54	14105										
MAGEA11	0	genome.wustl.edu	37	chrX	148798418	148798419	+	Frame_Shift_Del	DEL	GG	GG	-													0.185185185185185	10	0.15516540792361	1.79737261146497	2.87579617834395	1.64331210191083	0.0360748418360478	0.289190125538154	0	tatgaagatgctttgagagaGgagggagagggagtctgagc							TCGA-A8-A09X-01A-11W-A019-09	TCGA-A8-A09X-10A-01W-A021-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48e532ea-2af5-427a-a784-781e208cced6	a0a00bdd-dfc0-4707-9491-d509f218d623	X	148798418	148798419	GG	-	DEL	MAGEA11	ENST00000355220	human	ensembl	69_37n	1	known	frame_shift_del	c.1272_1273	p.E425fs	0.001:0.004	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	162	0	0	77	143	65	-	-	-	-	148798419	GG	-	148798418	7	5	227	1	0	1	0	1	0	0	0	0	9232	991	35	0	1299	0	MAGEA11	23	148798418	Frame_Shift_Del	DEL	GG	TCGA-A8-A09X-01A-11W-A019-09	13343262	148798418	6472142	55	14106										
CCNL2	0	genome.wustl.edu	37	chr1	1330793	1330793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttatgaggatgcttcacaTggacgcagaaacccaactct	8	12	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	1330793	1330793	T	C	SNP	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	missense	c.575	p.H192R	1.000	superfamily_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	31	0	0	12	12	50	-	-	-	C	1330793	T	C	1330793	3	2	228	1	0	0	0	0	1	0	0	0	2961	1464	51	5	1045	5	CCNL2	1	1330793	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09		1330793	247919828	1	14107										
MORN1	0	genome.wustl.edu	37	chr1	2319697	2319697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgaccaggcccagtgccgGcggccttctcccgtgatctc	11	18	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	2319697	2319697	G	A	SNP	MORN1	ENST00000449373	human	ensembl	69_37n	-1	known	missense	c.80	p.A27V	0.128	NULL	NULL	-	no_start_codon	MORN1	HGNC	ENSG00000116151	36	0	0	14	16	53.33	-	-	-	A	2319697	G	A	2319697	3	1	228	1	0	0	0	0	1	0	0	0	9780	1190	42	4	1313	4	MORN1	1	2319697	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	988904	2319697	246930924	2	14108										
SLC2A7	0	genome.wustl.edu	37	chr1	9082985	9082985	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttctgtttacctgccgcaGctatcaaccagcaggcccac	7	17	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	9082985	9082985	G	A	SNP	SLC2A7	ENST00000400906	human	ensembl	69_37n	-1	known	silent	c.303	p.S101	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241	160	0	0	100	96	48.98	-	-	-	A	9082985	G	A	9082985	2	1	228	1	0	0	0	0	0	0	0	1	14639	962	34	4		4	SLC2A7	1	9082985	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6763288	9082985	240167636	3	14109										
UBE4B	0	genome.wustl.edu	37	chr1	10163069	10163069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctggtctgtaagatcttcCgtgtctcttggaaggaccgg	13	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	10163069	10163069	C	A	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.499	p.R167S	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	247	0	0	141	98	41	-	-	-	A	10163069	C	A	10163069	3	1	228	1	0	0	0	0	1	0	0	0	16980	652	23	3	517	3	UBE4B	1	10163069	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1080084	10163069	239087552	4	14110										
AGTRAP	0	genome.wustl.edu	37	chr1	11805938	11805938	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgtctcctgcggtctcaGggtctgtgtcagccgggtca	15	11	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	11805938	11805938	G	T	SNP	AGTRAP	ENST00000494437	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AGTRAP	HGNC	ENSG00000177674	89	0	0	52	44	45.83	-	-	-	T	11805938	G	T	11805938	1	4	228	0	1	0	0	0	0	0	0	0	403	1015	35	4		4	AGTRAP	1	11805938	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1642869	11805938	237444683	5	14111										
TNFRSF1B	0	genome.wustl.edu	37	chr1	12266990	12266990	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaatgtgcctttcggtcacaGctggagacgccagagaccct	12	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	12266990	12266990	G	A	SNP	TNFRSF1B	ENST00000376259	human	ensembl	69_37n	1	known	silent	c.1299	p.Q433	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1B	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137	95	0	0	61	40	39.6	-	-	-	A	12266990	G	A	12266990	2	1	228	1	0	0	0	0	0	0	0	1	16389	962	34	4		4	TNFRSF1B	1	12266990	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	461052	12266990	236983631	6	14112										
PRAMEF10	0	genome.wustl.edu	37	chr1	12952852	12952852	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctgcctgacttccctgagTgtacgcatcagctcagcccg	11	15	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	12952852	12952852	T	C	SNP	PRAMEF10	ENST00000235347	human	ensembl	69_37n	-1	known	silent	c.1320	p.T440	0.000	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	145	0	0	92	84	47.73	-	-	-	C	12952852	T	C	12952852	2	2	228	1	0	0	0	0	0	0	0	1	12503	1683	59	5		5	PRAMEF10	1	12952852	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	685862	12952852	236297769	7	14113										
PRDM2	0	genome.wustl.edu	37	chr1	14108686	14108686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgtaatcgagagttcactTacattggaagcctgaataaa	8	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	14108686	14108686	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.4396	p.Y1466H	1.000	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	494	0	0	328	240	42.25	-	-	-	C	14108686	T	C	14108686	3	2	228	1	0	0	0	0	1	0	0	0	12539	1754	61	5	4422	5	PRDM2	1	14108686	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1155834	14108686	235141935	8	14114										
DNAJC16	0	genome.wustl.edu	37	chr1	15871000	15871002	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcattaacgggaaaatctcCttcttccacaatgcagttgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	15871000	15871002	CTT	-	DEL	DNAJC16	ENST00000375847	human	ensembl	69_37n	1	known	in_frame_del	c.681_683	p.F229in_frame_del	0.992:1.000:1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_DnaJ_N,pfam_Thioredoxin_domain,superfamily_DnaJ_N,superfamily_Thioredoxin-like_fold,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC16	HGNC	ENSG00000116138	90	0	0	68	43	38.74	-	-	-	-	15871002	CTT	-	15871000	7	5	228	1	0	1	0	1	0	0	0	0	4670	668	24	0	695	0	DNAJC16	1	15871000	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	1762314	15871000	233379621	9	14115										
SPEN	0	genome.wustl.edu	37	chr1	16260966	16260966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcagtgaccgtcacagcggGtgcggttactgctgcatctg	14	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	16260966	16260966	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.8231	p.G2744D	0.014	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	90	0	0	56	40	41.67	-	-	-	A	16260966	G	A	16260966	3	1	228	1	0	0	0	0	1	0	0	0	15129	1261	44	4	8273	4	SPEN	1	16260966	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	389966	16260966	232989655	10	14116										
ARHGEF19	0	genome.wustl.edu	37	chr1	16525745	16525745	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctaacacactgaacctggggGcaatctgacagcccaaggga	11	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	16525745	16525745	G	A	SNP	ARHGEF19	ENST00000270747	human	ensembl	69_37n	-1	known	silent	c.2151	p.C717	0.968	superfamily_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	160	0	0	120	89	42.58	-	-	-	A	16525745	G	A	16525745	2	1	228	1	0	0	0	0	0	0	0	1	904	1195	42	4		4	ARHGEF19	1	16525745	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	264779	16525745	232724876	11	14117										
FBXO42	0	genome.wustl.edu	37	chr1	16577863	16577863	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgatctggtagtgatcctcGtcggggggccaaagaaagtc	14	9	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	16577863	16577863	G	A	SNP	FBXO42	ENST00000375592	human	ensembl	69_37n	-1	known	nonsense	c.1456	p.R486*	0.901	NULL	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO42	HGNC	ENSG00000037637	73	0	0	61	51	45.54	-	-	-	A	16577863	G	A	16577863	4	1	228	1	0	0	0	0	0	1	0	0	5797	1153	40	1	701	1	FBXO42	1	16577863	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	52118	16577863	232672758	12	14118										
PADI2	0	genome.wustl.edu	37	chr1	17395588	17395588	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaagggcttcctgcggacgTtggtgccacagtggacttcc	14	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	17395588	17395588	T	C	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	missense	c.1949	p.N650S	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	95	0	0	58	37	38.95	-	-	-	C	17395588	T	C	17395588	3	2	228	1	0	0	0	0	1	0	0	0	11451	1725	60	5	52	5	PADI2	1	17395588	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	817725	17395588	231855033	13	14119										
UBR4	0	genome.wustl.edu	37	chr1	19489050	19489050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactctggctcagggcattcGtgacatcagccaagtaagac	10	11	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	19489050	19489050	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.4820	p.T1607M	0.998	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	193	0	0	102	73	41.71	-	-	-	A	19489050	G	A	19489050	3	1	228	1	0	0	0	0	1	0	0	0	17001	1145	40	1	11019	1	UBR4	1	19489050	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2093462	19489050	229761571	14	14120										
NBL1	0	genome.wustl.edu	37	chr1	19969872	19969872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaagtttccagccaagctaGgtaaaacacatggacacagg	11	9	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	19969872	19969872	G	A	SNP	NBL1	ENST00000289749	human	ensembl	69_37n	1	known	missense	c.67	p.G23S	0.000	NULL	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C	-	no_errors	NBL1	HGNC	ENSG00000158747	22	0	0	8	7	46.67	-	-	-	A	19969872	G	A	19969872	3	1	228	1	0	0	0	0	1	0	0	0	10262	1000	35	4	69	4	NBL1	1	19969872	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	480822	19969872	229280749	15	14121										
PLA2G2A	0	genome.wustl.edu	37	chr1	20304730	20304730	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgactttgcaacagtctagaGcagaagttccaacatgccgg	10	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	20304730	20304730	G	A	SNP	PLA2G2A	ENST00000496748	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.176	-	-	-	no_errors	PLA2G2A	HGNC	ENSG00000188257	81	0	0	29	33	53.23	-	-	-	A	20304730	G	A	20304730	1	1	228	0	1	0	0	0	0	0	0	0	12069	986	34	4		4	PLA2G2A	1	20304730	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	334858	20304730	228945891	16	14122										
KIF17	0	genome.wustl.edu	37	chr1	21016680	21016680	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggggggcaaggggtgcccaCctgtctccttccgcaggttc	15	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	21016680	21016680	C	T	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	splice_site	c.1381+1	e7+1	1.000	-	-	-	no_errors	KIF17	HGNC	ENSG00000117245	21	0	0	19	22	53.66	-	-	-	T	21016680	C	T	21016680	5	4	228	1	0	0	0	0	0	0	1	0	8331	521	18	4	1743	4	KIF17	1	21016680	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	711950	21016680	228233941	17	14123										
TCEB3	0	genome.wustl.edu	37	chr1	24078183	24078183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgttgcccaaggtaaaagAgaagggttctaacaacctaa	9	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	24078183	24078183	A	G	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	missense	c.1166	p.E389G	1.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	271	2	0.73	159	152	48.87	-	-	-	G	24078183	A	G	24078183	3	3	228	1	0	0	0	0	1	0	0	0	15776	304	11	5	1180	5	TCEB3	1	24078183	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3061503	24078183	225172438	18	14124										
CLIC4	0	genome.wustl.edu	37	chr1	25140659	25140659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcaacagtgaagtcaaaaCggatgtaaataagattgagg	10	4	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	25140659	25140659	C	T	SNP	CLIC4	ENST00000374379	human	ensembl	69_37n	1	known	missense	c.257	p.T86M	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC4	HGNC	ENSG00000169504	99	0	0	74	41	35.65	-	-	-	T	25140659	C	T	25140659	3	4	228	1	0	0	0	0	1	0	0	0	3558	536	19	1	267	1	CLIC4	1	25140659	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1062476	25140659	224109962	19	14125										
TMEM50A	0	genome.wustl.edu	37	chr1	25667024	25667024	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgctcagaatgcattgactGgggggaaaagcgcaatacta							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	25667024	25667024	G	-	DEL	TMEM50A	ENST00000374358	human	ensembl	69_37n	1	known	frame_shift_del	c.47	p.E18fs	1.000	pfam_UPF0220	pfam_UPF0220	-	no_errors	TMEM50A	HGNC	ENSG00000183726	120	0	0	76	44	36.07	-	-	-	-	25667024	G	-	25667024	7	5	228	1	0	1	0	1	0	0	0	0	16270	1357	47	0	49	0	TMEM50A	1	25667024	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	526365	25667024	223583597	20	14126										
ARID1A	0	genome.wustl.edu	37	chr1	27101259	27101259	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttatgccaacaggcagagcaCgggctctgccccccagggcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	27101259	27101259	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_del	c.4541	p.T1514fs	0.902	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	99	0	0	59	45	40.54	-	-	-	-	27101259	C	-	27101259	7	5	228	1	0	1	0	1	0	0	0	0	915	536	19	0	4611	0	ARID1A	1	27101259	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	1434235	27101259	222149362	21	14127										
ARID1A	0	genome.wustl.edu	37	chr1	27101486	27101486	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcaggtatccagccctgctCccctgccccggccaatggag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	27101486	27101486	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_del	c.4768	p.L1591fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	170	0	0	115	58	32.95	-	-	-	-	27101486	C	-	27101486	7	5	228	1	0	1	0	1	0	0	0	0	915	855	30	0	4838	0	ARID1A	1	27101486	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	227	27101486	222149135	22	14128										
NUDC	0	genome.wustl.edu	37	chr1	27271994	27271994	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctggttgggggagcttcaGcaggaaggtgaggggcctcg	21	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	27271994	27271994	G	A	SNP	NUDC	ENST00000484772	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NUDC	HGNC	ENSG00000090273	45	0	0	38	25	39.68	-	-	-	A	27271994	G	A	27271994	1	1	228	0	1	0	0	0	0	0	0	0	10794	986	34	4		4	NUDC	1	27271994	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	170508	27271994	221978627	23	14129										
GPR3	0	genome.wustl.edu	37	chr1	27721269	27721269	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcttccaagatccccttcCgatcccgctcccccagtgat	5	20	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	27721269	27721269	C	T	SNP	GPR3	ENST00000374024	human	ensembl	69_37n	1	known	nonsense	c.967	p.R323*	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR3_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR3	HGNC	ENSG00000181773	100	0	0	59	49	45.37	-	-	-	T	27721269	C	T	27721269	4	4	228	1	0	0	0	0	0	1	0	0	6736	644	23	1	969	1	GPR3	1	27721269	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	449275	27721269	221529352	24	14130										
RPA2	0	genome.wustl.edu	37	chr1	28240899	28240901	+	In_Frame_Del	DEL	CCT	CCT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctcgccctcttgctaaaaCctcctgcgattctcttcctc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	28240899	28240901	CCT	-	DEL	RPA2	ENST00000313433	human	ensembl	69_37n	-1	known	in_frame_del	c.56_54	p.G19in_frame_del	0.000:0.000:0.000	NULL	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA2	HGNC	ENSG00000117748	39	0	0	41	27	39.71	-	-	-	-	28240901	CCT	-	28240899	7	5	228	1	0	1	0	1	0	0	0	0	13623	522	18	0		0	RPA2	1	28240899	In_Frame_Del	DEL	CCT	TCGA-A8-A09Z-01A-11W-A019-09	519630	28240899	221009722	25	14131										
TINAGL1	0	genome.wustl.edu	37	chr1	32043047	32043047	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcggcgtgccacccccttttCccccgatccaaggtgggcac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	32043047	32043047	C	-	DEL	TINAGL1	ENST00000271064	human	ensembl	69_37n	1	known	frame_shift_del	c.298	p.P101fs	0.855	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910	51	0	0	39	22	35.48	-	-	-	-	32043047	C	-	32043047	7	5	228	1	0	1	0	1	0	0	0	0	16017	855	30	0	300	0	TINAGL1	1	32043047	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	3802148	32043047	217207574	26	14132										
TMEM39B	0	genome.wustl.edu	37	chr1	32568087	32568087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcctgctgctggagggcgCtgtcattgtctatcagctgt	12	12	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	32568087	32568087	C	T	SNP	TMEM39B	ENST00000336294	human	ensembl	69_37n	1	known	missense	c.1292	p.A431V	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39B	HGNC	ENSG00000121775	71	0	0	70	52	42.62	-	-	-	T	32568087	C	T	32568087	3	4	228	1	0	0	0	0	1	0	0	0	16257	797	28	4	1326	4	TMEM39B	1	32568087	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	525040	32568087	216682534	27	14133										
SF3A3	0	genome.wustl.edu	37	chr1	38423888	38423888	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttgtcttttcagatcctcGtatgtcttcttattcacaac	4	12	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	38423888	38423888	G	A	SNP	SF3A3	ENST00000373019	human	ensembl	69_37n	-1	known	silent	c.1476	p.Y492	0.867	pfam_DUF3449	pfam_DUF3449,pfam_SF3a60_bindingd,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A3	HGNC	ENSG00000183431	161	0	0	106	72	40.22	-	-	-	A	38423888	G	A	38423888	2	1	228	1	0	0	0	0	0	0	0	1	14236	1140	40	1		1	SF3A3	1	38423888	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5855801	38423888	210826733	28	14134										
KIAA0754	0	genome.wustl.edu	37	chr1	39879896	39879896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcccaccccagaggtgcctgCcatcccagctgctgcagtgc	11	18	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	39879896	39879896	C	T	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.3551	p.A1184V	0.051	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	49	0	0	35	18	33.96	-	-	-	T	39879896	C	T	39879896	3	4	228	1	0	0	0	0	1	0	0	0	8244	739	26	4	3961	4	KIAA0754	1	39879896	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1456008	39879896	209370725	29	14135										
PPT1	0	genome.wustl.edu	37	chr1	40544322	40544322	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtttttcttgtaggactcAttgataccctgaaagaaagg	10	6	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	40544322	40544322	A	G	SNP	PPT1	ENST00000433473	human	ensembl	69_37n	-1	known	silent	c.636	p.N212	0.820	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238	135	0	0	81	51	38.64	-	-	-	G	40544322	A	G	40544322	2	3	228	1	0	0	0	0	0	0	0	1	12488	214	8	5		5	PPT1	1	40544322	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	664426	40544322	208706299	30	14136										
FOXJ3	0	genome.wustl.edu	37	chr1	42654600	42654600	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctcatactctccatcagacCtatgaggaaagcattaaaaa	5	10	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	42654600	42654600	C	A	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	splice_site	c.1454-1	e10-1	1.000	-	-	-	no_errors	FOXJ3	HGNC	ENSG00000198815	101	0	0	44	28	38.89	-	-	-	A	42654600	C	A	42654600	5	1	228	1	0	0	0	0	0	0	1	0	6061	695	24	4	427	4	FOXJ3	1	42654600	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2110278	42654600	206596021	31	14137										
YBX1	0	genome.wustl.edu	37	chr1	43161874	43161874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgtgatattactagactgCcataaagaagaataacccca	6	8	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	43161874	43161874	C	T	SNP	YBX1	ENST00000321358	human	ensembl	69_37n	1	known	missense	c.269	p.A90V	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX1	HGNC	ENSG00000065978	253	0	0	139	86	38.22	-	-	-	T	43161874	C	T	43161874	3	4	228	1	0	0	0	0	1	0	0	0	17566	739	26	4	283	4	YBX1	1	43161874	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	507274	43161874	206088747	32	14138										
YBX1	0	genome.wustl.edu	37	chr1	43166674	43166674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctcccgaggctgagcagggCggggctgagtaaatgccggc	18	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	43166674	43166674	C	T	SNP	YBX1	ENST00000436427	human	ensembl	69_37n	1	known	missense	c.1112	p.A371V	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	YBX1	HGNC	ENSG00000065978	228	0	0	138	106	42.74	-	-	-	T	43166674	C	T	43166674	3	4	228	1	0	0	0	0	1	0	0	0	17566	755	27	1	989	1	YBX1	1	43166674	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4800	43166674	206083947	33	14139										
RPS8	0	genome.wustl.edu	37	chr1	45243097	45243097	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attggggctggtaaagactgCgggttgccaaacataactag	13	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	45243097	45243097	C	T	SNP	RPS8	ENST00000464658	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RPS8	HGNC	ENSG00000142937	14	0	0	8	6	42.86	-	-	-	T	45243097	C	T	45243097	1	4	228	0	1	0	0	0	0	0	0	0	13747	783	27	1		1	RPS8	1	45243097	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2076423	45243097	204007524	34	14140										
ZSWIM5	0	genome.wustl.edu	37	chr1	45553775	45553775	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctaccacatgggcacagtAgaatatgtccttgttcccac	8	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	45553775	45553775	A	G	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	missense	c.730	p.Y244H	1.000	pfscan_Znf_SWIM	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	241	0	0	118	87	42.23	-	-	-	G	45553775	A	G	45553775	3	3	228	1	0	0	0	0	1	0	0	0	18335	420	15	5	2879	5	ZSWIM5	1	45553775	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	310678	45553775	203696846	35	14141										
MKNK1	0	genome.wustl.edu	37	chr1	47046297	47046297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcagaggtcagcttgtacaTatctagaggtgaaatggatg	12	5	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	47046297	47046297	T	C	SNP	MKNK1	ENST00000371946	human	ensembl	69_37n	-1	known	missense	c.139	p.M47V	0.641	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277	69	0	0	43	29	40.28	-	-	-	C	47046297	T	C	47046297	3	2	228	1	0	0	0	0	1	0	0	0	9675	1406	49	5	1302	5	MKNK1	1	47046297	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1492522	47046297	202204324	36	14142										
CYP4A11	0	genome.wustl.edu	37	chr1	47398493	47398493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagcagaacccggtgcaaaaCggaaagggtcaaacacctgc	12	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	47398493	47398493	C	T	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.1307	p.R436H	0.022	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	507	0	0	333	254	43.27	-	-	-	T	47398493	C	T	47398493	3	4	228	1	0	0	0	0	1	0	0	0	4214	536	19	1	263	1	CYP4A11	1	47398493	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	352196	47398493	201852128	37	14143										
FAM151A	0	genome.wustl.edu	37	chr1	55081757	55081757	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgttgtcactgtagatagtGggggggtgtgccatgatggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	55081757	55081757	G	-	DEL	FAM151A	ENST00000302250	human	ensembl	69_37n	-1	known	frame_shift_del	c.351	p.T118fs	0.037	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	130	0	0	162	72	30.64	-	-	-	-	55081757	G	-	55081757	7	5	228	1	0	1	0	1	0	0	0	0	5498	1335	47	0	1430	0	FAM151A	1	55081757	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	7683264	55081757	194168864	38	14144										
HOOK1	0	genome.wustl.edu	37	chr1	60331545	60331545	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attttatttttactaatagtAcaaaagatcaatgaacttga	4	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	60331545	60331545	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	silent	c.1746	p.V582	0.899	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	166	1	0.6	76	59	43.7	-	-	-	G	60331545	A	G	60331545	2	3	228	1	0	0	0	0	0	0	0	1	7333	405	14	5		5	HOOK1	1	60331545	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5249788	60331545	188919076	39	14145										
DOCK7	0	genome.wustl.edu	37	chr1	62941104	62941104	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtataatcaactgaaattagAaaaaaaaaagatcaattgta							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	62941104	62941104	A	-	DEL	DOCK7	ENST00000467758	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	78	0	0	17	49	72.06	-	-	-	-	62941104	A	-	62941104	6	5	228	0	1	1	0	1	0	0	0	0	4727	261	9	0		0	DOCK7	1	62941104	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	2609559	62941104	186309517	40	14146										
ALG6	0	genome.wustl.edu	37	chr1	63836751	63836751	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtaatacatttttactggttAaaaaaaaaacgaaattttcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	63836751	63836751	A	-	DEL	ALG6	ENST00000487136	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALG6	HGNC	ENSG00000088035	66	0	0	29	18	37.5	-	-	-	-	63836751	A	-	63836751	6	5	228	0	1	1	0	1	0	0	0	0	522	377	13	0		0	ALG6	1	63836751	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	895647	63836751	185413870	41	14147										
JAK1	0	genome.wustl.edu	37	chr1	65300318	65300318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggatggttggaattcccagCatttcctcataagttgataa	9	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	65300318	65300318	C	T	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.3392	p.C1131Y	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	163	0	0	86	31	26.5	-	-	-	T	65300318	C	T	65300318	3	4	228	1	0	0	0	0	1	0	0	0	7991	710	25	4	76	4	JAK1	1	65300318	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1463567	65300318	183950303	42	14148										
PDE4B	0	genome.wustl.edu	37	chr1	66384457	66384457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggagatggtatttccaggCcgaccacactgcctttgaca	11	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	66384457	66384457	C	T	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.220	p.P74S	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	195	0	0	93	71	43.29	-	-	-	T	66384457	C	T	66384457	3	4	228	1	0	0	0	0	1	0	0	0	11713	739	26	4	226	4	PDE4B	1	66384457	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1084139	66384457	182866164	43	14149										
DEPDC1	0	genome.wustl.edu	37	chr1	68947143	68947143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtgacctcgtacccattgCatcatgaagtttgggcatat	9	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	68947143	68947143	C	T	SNP	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	missense	c.1915	p.A639T	1.000	superfamily_Rho_GTPase_activation_prot	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	83	0	0	47	36	43.37	-	-	-	T	68947143	C	T	68947143	3	4	228	1	0	0	0	0	1	0	0	0	4475	710	25	4	536	4	DEPDC1	1	68947143	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2562686	68947143	180303478	44	14150										
RABGGTB	0	genome.wustl.edu	37	chr1	76253345	76253345	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taaagaagtgtgacagtcatAagcagtgagacagtatttat	10	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	76253345	76253345	A	G	SNP	RABGGTB	ENST00000496055	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	62	0	0	30	23	43.4	-	-	-	G	76253345	A	G	76253345	1	3	228	0	1	0	0	0	0	0	0	0	13051	377	13	5		5	RABGGTB	1	76253345	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	7306202	76253345	172997276	45	14151										
NEXN	0	genome.wustl.edu	37	chr1	78398982	78398982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aataggtagtagatgatgacTccccagagatgtataagaca	10	6	0	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	78398982	78398982	T	C	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.1069	p.S357P	0.704	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	105	0	0	56	50	46.73	-	-	-	C	78398982	T	C	78398982	3	2	228	1	0	0	0	0	1	0	0	0	10427	1551	54	5	1103	5	NEXN	1	78398982	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2145637	78398982	170851639	46	14152										
ELTD1	0	genome.wustl.edu	37	chr1	79385923	79385923	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagttcagcaagaaataggCtacagcaaagatttttgtga	9	6	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	79385923	79385923	C	A	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469I	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	205	0	0	85	62	42.18	-	-	-	A	79385923	C	A	79385923	3	1	228	1	0	0	0	0	1	0	0	0	5121	797	28	4	690	4	ELTD1	1	79385923	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	986941	79385923	169864698	47	14153										
LPHN2	0	genome.wustl.edu	37	chr1	82302570	82302570	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggatttgtttgtttttcagAtatgaagatcaatgatgcag	10	3	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	82302570	82302570	A	C	SNP	LPHN2	ENST00000469377	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LPHN2	HGNC	ENSG00000117114	62	0	0	32	22	40.74	-	-	-	C	82302570	A	C	82302570	1	2	228	0	1	0	0	0	0	0	0	0	8982	347	12	5		5	LPHN2	1	82302570	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2916647	82302570	166948051	48	14154										
MCOLN3	0	genome.wustl.edu	37	chr1	85487858	85487858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acattgggcagcgctgcctgAagggtcaaaatgaggagctg	15	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	85487858	85487858	A	G	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	silent	c.1215	p.L405	0.888	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	90	0	0	47	29	38.16	-	-	-	G	85487858	A	G	85487858	2	3	228	1	0	0	0	0	0	0	0	1	9468	233	9	5		5	MCOLN3	1	85487858	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3185288	85487858	163762763	49	14155										
CLCA1	0	genome.wustl.edu	37	chr1	86951098	86951098	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaatcaaaaatgcaatctcCgaagcacatgggaagtgatc	8	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	86951098	86951098	C	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	nonsense	c.808	p.R270*	1.000	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	477	0	0	251	174	40.94	-	-	-	T	86951098	C	T	86951098	4	4	228	1	0	0	0	0	0	1	0	0	3487	644	23	1	830	1	CLCA1	1	86951098	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1463240	86951098	162299523	50	14156										
RBMXL1	0	genome.wustl.edu	37	chr1	89448956	89448956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccataactatctcttccaCgtgatagaggagctcttcct	6	13	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	89448956	89448956	C	T	SNP	RBMXL1	ENST00000321792	human	ensembl	69_37n	-1	known	missense	c.554	p.R185H	0.972	pfam_RBM1CTR	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	241	1	0.41	141	101	41.74	-	-	-	T	89448956	C	T	89448956	3	4	228	1	0	0	0	0	1	0	0	0	13236	536	19	1	622	1	RBMXL1	1	89448956	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2497858	89448956	159801665	51	14157										
LRRC8B	0	genome.wustl.edu	37	chr1	90049784	90049784	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctgtgttctccctgaacaGttgagtactatgcagttgga	12	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	90049784	90049784	G	A	SNP	LRRC8B	ENST00000330947	human	ensembl	69_37n	1	known	silent	c.1575	p.Q525	0.384	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147	188	0	0	93	58	38.41	-	-	-	A	90049784	G	A	90049784	2	1	228	1	0	0	0	0	0	0	0	1	9088	1020	36	4		4	LRRC8B	1	90049784	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	600828	90049784	159200837	52	14158										
ZNF644	0	genome.wustl.edu	37	chr1	91382293	91382293	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagataatttaatgtggcttAaaaaaaaagaatttcaaatt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	91382293	91382293	A	-	DEL	ZNF644	ENST00000467231	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482	116	0	0	20	49	65.33	-	-	-	-	91382293	A	-	91382293	6	5	228	0	1	1	0	1	0	0	0	0	18156	377	13	0		0	ZNF644	1	91382293	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	1332509	91382293	157868328	53	14159										
FNBP1L	0	genome.wustl.edu	37	chr1	94009670	94009670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gattctcttttcagggcccaGcactagaagatttcagtcat	8	10	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	94009670	94009670	G	A	SNP	FNBP1L	ENST00000271234	human	ensembl	69_37n	1	known	missense	c.1171	p.A391T	1.000	superfamily_HR1_rho-bd	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942	118	0	0	62	33	34.74	-	-	-	A	94009670	G	A	94009670	3	1	228	1	0	0	0	0	1	0	0	0	6012	971	34	4	1217	4	FNBP1L	1	94009670	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2627377	94009670	155240951	54	14160										
LPPR5	0	genome.wustl.edu	37	chr1	99470004	99470005	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttaccacgagcacggggaINSccccggcggccagcgagtag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	99470004	99470005	-	C	INS	LPPR5	ENST00000263177	human	ensembl	69_37n	-1	known	frame_shift_ins	c.224_223	p.V75fs	1.000:0.996	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Clone_based_vega_gene	ENSG00000117598	11	0	0	4	5	55.56	-	-	-	C	99470005	-	C	99470004	7	5	228	1	0	1	1	0	0	0	0	0	8994	275	10	0	765	0	LPPR5	1	99470004	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	5460334	99470004	149780617	55	14161										
FAM102B	0	genome.wustl.edu	37	chr1	109177741	109177741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgttttagggtggggtctgGagcttatgaacaagttgtga	15	4	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	109177741	109177741	G	T	SNP	FAM102B	ENST00000370035	human	ensembl	69_37n	1	known	missense	c.1052	p.G351V	1.000	NULL	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636	170	0	0	83	56	40.29	-	-	-	T	109177741	G	T	109177741	3	4	228	1	0	0	0	0	1	0	0	0	5423	1174	41	2	1094	2	FAM102B	1	109177741	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	9707737	109177741	140072880	56	14162										
KIAA1324	0	genome.wustl.edu	37	chr1	109740205	109740206	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtctgccaggcagtcatcatINSccccccagaggtgacaggct							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	109740205	109740206	-	C	INS	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	frame_shift_ins	c.2231_2232	p.E747fs	1.000:0.985	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	108	0	0	69	38	35.51	-	-	-	C	109740206	-	C	109740205	7	5	228	1	0	1	1	0	0	0	0	0	8275	1435	50	0	2293	0	KIAA1324	1	109740205	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	562464	109740205	139510416	57	14163										
KIAA1324	0	genome.wustl.edu	37	chr1	109743433	109743433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgccagcagctgacagctgcGccatcatggaaggcgaggat	14	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	109743433	109743433	G	A	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	missense	c.2884	p.A962T	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	132	0	0	81	54	40	-	-	-	A	109743433	G	A	109743433	3	1	228	1	0	0	0	0	1	0	0	0	8275	1087	38	1	2966	1	KIAA1324	1	109743433	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3228	109743433	139507188	58	14164										
C1orf88	0	genome.wustl.edu	37	chr1	111891153	111891153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacaggaaatgacacctcatGcaggcaggtaccagaaagta	10	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	111891153	111891153	G	A	SNP	C1orf88	ENST00000369738	human	ensembl	69_37n	1	known	missense	c.274	p.A92T	0.731	NULL	NULL	-	no_errors	C1orf88	HGNC	ENSG00000173947	572	1	0.17	207	186	47.21	-	-	-	A	111891153	G	A	111891153	3	1	228	1	0	0	0	0	1	0	0	0	2085	1319	46	4	288	4	C1orf88	1	111891153	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2147720	111891153	137359468	59	14165										
CAPZA1	0	genome.wustl.edu	37	chr1	113202109	113202109	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatgaaagacaaaataactTagaaaaggcttatggtcagg	9	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	113202109	113202109	T	C	SNP	CAPZA1	ENST00000466066	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	10	0	0	2	5	71.43	-	-	-	C	113202109	T	C	113202109	1	2	228	0	1	0	0	0	0	0	0	0	2665	1769	61	5		5	CAPZA1	1	113202109	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1310956	113202109	136048512	60	14166										
PTPN22	0	genome.wustl.edu	37	chr1	114399050	114399051	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gattatataatcagatttccINSttttttcagcttcctaaaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	114399050	114399051	-	T	INS	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	frame_shift_ins	c.494_493	p.R165fs	0.814:0.894	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	76	0	0	55	26	32.1	-	-	-	T	114399051	-	T	114399050	7	5	228	1	0	1	1	0	0	0	0	0	12870	681	24	0	2012	0	PTPN22	1	114399050	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	1196941	114399050	134851571	61	14167										
AP4B1	0	genome.wustl.edu	37	chr1	114440545	114440545	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggacacaaccaaaccaggtCtcggaaagtctgcaccacca	8	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	114440545	114440545	C	A	SNP	AP4B1	ENST00000256658	human	ensembl	69_37n	-1	known	missense	c.1219	p.D407Y	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu	-	no_errors	AP4B1	HGNC	ENSG00000134262	159	0	0	106	62	36.9	-	-	-	A	114440545	C	A	114440545	3	1	228	1	0	0	0	0	1	0	0	0	752	913	32	2	1016	2	AP4B1	1	114440545	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	41495	114440545	134810076	62	14168										
DCLRE1B	0	genome.wustl.edu	37	chr1	114453818	114453818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggagtttcagacctgggtgGtattgagtcctcggcgcctg	15	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	114453818	114453818	G	A	SNP	DCLRE1B	ENST00000369563	human	ensembl	69_37n	1	known	missense	c.604	p.V202I	0.995	NULL	pfam_DRMBL	-	no_errors	DCLRE1B	HGNC	ENSG00000118655	64	0	0	77	51	39.84	-	-	-	A	114453818	G	A	114453818	3	1	228	1	0	0	0	0	1	0	0	0	4326	1261	44	4	618	4	DCLRE1B	1	114453818	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	13273	114453818	134796803	63	14169										
CD2	0	genome.wustl.edu	37	chr1	117297396	117297396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcagacaagaaaaagattGcacaattcagaaaagagaaa	7	6	2	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	117297396	117297396	G	A	SNP	CD2	ENST00000369478	human	ensembl	69_37n	1	known	missense	c.205	p.A69T	0.001	pfam_Ig_V-set	pfam_Ig_C2-set,pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	-	no_errors	CD2	HGNC	ENSG00000116824	119	0	0	66	34	34	-	-	-	A	117297396	G	A	117297396	3	1	228	1	0	0	0	0	1	0	0	0	3008	1319	46	4	211	4	CD2	1	117297396	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2843578	117297396	131953225	64	14170										
VTCN1	0	genome.wustl.edu	37	chr1	117699309	117699309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagccgcaaagaggcattgCcaactatcacttgatcagca	8	12	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	117699309	117699309	C	T	SNP	VTCN1	ENST00000359008	human	ensembl	69_37n	-1	known	missense	c.341	p.G114D	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VTCN1	HGNC	ENSG00000134258	181	0	0	97	87	47.03	-	-	-	T	117699309	C	T	117699309	3	4	228	1	0	0	0	0	1	0	0	0	17331	739	26	4	528	4	VTCN1	1	117699309	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	401913	117699309	131551312	65	14171										
WDR3	0	genome.wustl.edu	37	chr1	118482189	118482189	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtatgggacatagcttatctGcaagaggtaattacttctta	9	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	118482189	118482189	G	A	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	1	known	silent	c.669	p.L223	0.956	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	407	2	0.49	216	162	42.74	-	-	-	A	118482189	G	A	118482189	2	1	228	1	0	0	0	0	0	0	0	1	17382	1306	46	4		4	WDR3	1	118482189	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	782880	118482189	130768432	66	14172										
HAO2	0	genome.wustl.edu	37	chr1	119936466	119936466	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagttttccaggctgtaagaAaaaagggccaataaccagac	9	9	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	119936466	119936466	A	G	SNP	HAO2	ENST00000482991	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.037	-	-	-	no_errors	HAO2	HGNC	ENSG00000116882	204	0	0	114	75	39.68	-	-	-	G	119936466	A	G	119936466	1	3	228	0	1	0	0	0	0	0	0	0	7003	29	1	5		5	HAO2	1	119936466	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1454277	119936466	129314155	67	14173										
HMGCS2	0	genome.wustl.edu	37	chr1	120298093	120298093	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccgtacagggatgaggtgtAcatgttcccattgtgagtgg	14	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	120298093	120298093	A	G	SNP	HMGCS2	ENST00000369406	human	ensembl	69_37n	-1	known	missense	c.1144	p.Y382H	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240	414	0	0	257	198	43.52	-	-	-	G	120298093	A	G	120298093	3	3	228	1	0	0	0	0	1	0	0	0	7284	391	14	5	398	5	HMGCS2	1	120298093	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	361627	120298093	128952528	68	14174										
PEX11B	0	genome.wustl.edu	37	chr1	145522532	145522532	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtactatttgttttccctCatcatgaatttgagccgtga	8	8	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	145522532	145522532	C	T	SNP	PEX11B	ENST00000369306	human	ensembl	69_37n	1	known	silent	c.393	p.L131	1.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	416	0	0	489	148	23.23	-	-	-	T	145522532	C	T	145522532	2	4	228	1	0	0	0	0	0	0	0	1	11812	813	29	2		2	PEX11B	1	145522532	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	25224439	145522532	103728089	69	14175										
ITGA10	0	genome.wustl.edu	37	chr1	145535893	145535893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactcctggtcgctgggatcAccaattctgtgagtgactaa	10	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	145535893	145535893	A	G	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.2081	p.H694R	0.002	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	290	0	0	332	141	29.75	-	-	-	G	145535893	A	G	145535893	3	3	228	1	0	0	0	0	1	0	0	0	7927	159	6	5	2143	5	ITGA10	1	145535893	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	13361	145535893	103714728	70	14176										
ANKRD35	0	genome.wustl.edu	37	chr1	145562454	145562454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcccgcagacctagtgggCgagaggagtgcacaaagcaa	14	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	145562454	145562454	C	T	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	silent	c.2142	p.G714	0.124	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	13	0	0	24	14	36.84	-	-	-	T	145562454	C	T	145562454	2	4	228	1	0	0	0	0	0	0	0	1	663	755	27	1		1	ANKRD35	1	145562454	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	26561	145562454	103688167	71	14177										
VPS45	0	genome.wustl.edu	37	chr1	150039879	150039879	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatttagccagaaaagggggCgggaagggctgtagggtact	17	5	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	150039879	150039879	C	T	SNP	VPS45	ENST00000460366	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.951	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631	69	0	0	82	33	28.45	-	-	-	T	150039879	C	T	150039879	1	4	228	0	1	0	0	0	0	0	0	0	17308	783	27	1		1	VPS45	1	150039879	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4477425	150039879	99210742	72	14178										
GABPB2	0	genome.wustl.edu	37	chr1	151060754	151060754	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacgttgatggcaaatggcgCcccattcaccacagactggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	151060754	151060754	C	-	DEL	GABPB2	ENST00000368918	human	ensembl	69_37n	1	known	frame_shift_del	c.89	p.P31fs	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458	50	0	0	64	26	28.57	-	-	-	-	151060754	C	-	151060754	7	5	228	1	0	1	0	1	0	0	0	0	6208	739	26	0	91	0	GABPB2	1	151060754	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	1020875	151060754	98189867	73	14179										
RFX5	0	genome.wustl.edu	37	chr1	151315417	151315417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccggccctactagacagagGcagtgtagccactttcaggg	12	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	151315417	151315417	G	T	SNP	RFX5	ENST00000290524	human	ensembl	69_37n	-1	known	missense	c.1096	p.P366T	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390	109	0	0	164	50	23.36	-	-	-	T	151315417	G	T	151315417	3	4	228	1	0	0	0	0	1	0	0	0	13349	1203	42	4	758	4	RFX5	1	151315417	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	254663	151315417	97935204	74	14180										
TCHH	0	genome.wustl.edu	37	chr1	152083607	152083607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgggatgcggctcttaatccGctcccgggcctgttcctgct	12	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152083607	152083607	G	A	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.2086	p.R696W	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	113	0	0	126	78	37.86	-	-	-	A	152083607	G	A	152083607	3	1	228	1	0	0	0	0	1	0	0	0	15795	1086	38	1	3749	1	TCHH	1	152083607	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	768190	152083607	97167014	75	14181										
HRNR	0	genome.wustl.edu	37	chr1	152191270	152191270	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgagccagatccatgctgAgtgtaaccagaggactgccc	11	13	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152191270	152191270	A	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.2835	p.T945	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	129	0	0	106	46	29.87	-	-	-	T	152191270	A	T	152191270	2	4	228	1	0	0	0	0	0	0	0	1	7410	291	11	5		5	HRNR	1	152191270	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	107663	152191270	97059351	76	14182										
HRNR	0	genome.wustl.edu	37	chr1	152192116	152192116	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaaaatcggacccatgtcgGccgcgactaggagactggcc	12	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152192116	152192116	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.1989	p.G663	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	116	0	0	89	39	30.47	-	-	-	A	152192116	G	A	152192116	2	1	228	1	0	0	0	0	0	0	0	1	7410	1190	42	4		4	HRNR	1	152192116	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	846	152192116	97058505	77	14183										
FLG	0	genome.wustl.edu	37	chr1	152278792	152278792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtggaagcttcatggtgaCgcgaccctgagtgcctggag	16	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152278792	152278792	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8570	p.R2857H	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	685	2	0.29	803	157	16.3	-	-	-	T	152278792	C	T	152278792	3	4	228	1	0	0	0	0	1	0	0	0	5968	536	19	1	3619	1	FLG	1	152278792	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	86676	152278792	96971829	78	14184										
FLG	0	genome.wustl.edu	37	chr1	152279358	152279358	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttgtccgtgcccaatgccTgagtgtctggagctgtctgc	13	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152279358	152279358	T	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.8004	p.S2668	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	88	0	0	76	18	19.15	-	-	-	C	152279358	T	C	152279358	2	2	228	1	0	0	0	0	0	0	0	1	5968	1567	55	5		5	FLG	1	152279358	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	566	152279358	96971263	79	14185										
FLG	0	genome.wustl.edu	37	chr1	152286351	152286351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctctgtcttcatcatgggaCctggggtgtctggagccatc	13	11	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	152286351	152286351	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.1011	p.R337	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	283	0	0	305	86	21.94	-	-	-	T	152286351	C	T	152286351	2	4	228	1	0	0	0	0	0	0	0	1	5968	506	18	4		4	FLG	1	152286351	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6993	152286351	96964270	80	14186										
DENND4B	0	genome.wustl.edu	37	chr1	153910272	153910272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgataaagacagtgagcTcacttcctgacagctcctct	9	11	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	153910272	153910272	T	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.2033	p.E678G	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	123	1	0.81	125	49	28.16	-	-	-	C	153910272	T	C	153910272	3	2	228	1	0	0	0	0	1	0	0	0	4470	1551	54	5	2517	5	DENND4B	1	153910272	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1623921	153910272	95340349	81	14187										
RAB13	0	genome.wustl.edu	37	chr1	153954523	153954523	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccctgctcactccctctgCcgttgtctccctcaggttca	6	19	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	153954523	153954523	C	T	SNP	RAB13	ENST00000462680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	54	0	0	72	27	27.27	-	-	-	T	153954523	C	T	153954523	1	4	228	0	1	0	0	0	0	0	0	0	12982	754	26	4		4	RAB13	1	153954523	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	44251	153954523	95296098	82	14188										
UBAP2L	0	genome.wustl.edu	37	chr1	154229865	154229865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctggggtcccgccgttgttGcctaatccgtatattatggc	11	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	154229865	154229865	G	A	SNP	UBAP2L	ENST00000433615	human	ensembl	69_37n	1	known	missense	c.388	p.A130T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBAP2L	HGNC	ENSG00000143569	112	0	0	132	54	29.03	-	-	-	A	154229865	G	A	154229865	3	1	228	1	0	0	0	0	1	0	0	0	16935	1310	46	4	2471	4	UBAP2L	1	154229865	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	275342	154229865	95020756	83	14189										
ATP8B2	0	genome.wustl.edu	37	chr1	154317493	154317493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctggagtttctggagacagCgtgtgcctgcaaagctgtca	14	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	154317493	154317493	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.2432	p.A811V	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	152	0	0	142	52	26.8	-	-	-	T	154317493	C	T	154317493	3	4	228	1	0	0	0	0	1	0	0	0	1199	768	27	1	2648	1	ATP8B2	1	154317493	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	87628	154317493	94933128	84	14190										
ADAR	0	genome.wustl.edu	37	chr1	154561931	154561931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agagaatctcctttcacacaGcgattccctaggaaggtgtt	9	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	154561931	154561931	G	A	SNP	ADAR	ENST00000292205	human	ensembl	69_37n	-1	known	silent	c.2805	p.R935	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	101	0	0	114	43	27.39	-	-	-	A	154561931	G	A	154561931	2	1	228	1	0	0	0	0	0	0	0	1	281	958	34	4		4	ADAR	1	154561931	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	244438	154561931	94688690	85	14191										
KCNN3	0	genome.wustl.edu	37	chr1	154698440	154698440	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagttatgaacgtgcttctcCgctttggtgagttccagctt	10	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	154698440	154698440	C	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.1653	p.A551	0.002	superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	28	0	0	25	9	26.47	-	-	-	T	154698440	C	T	154698440	2	4	228	1	0	0	0	0	0	0	0	1	8134	639	23	1		1	KCNN3	1	154698440	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	136509	154698440	94552181	86	14192										
PBXIP1	0	genome.wustl.edu	37	chr1	154918317	154918317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agagaggccagctcctgttgCcgcactggggctagctctgt	14	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	154918317	154918317	C	T	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	silent	c.1833	p.R611	0.998	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	127	1	0.78	151	67	30.59	-	-	-	T	154918317	C	T	154918317	2	4	228	1	0	0	0	0	0	0	0	1	11569	726	26	4		4	PBXIP1	1	154918317	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	219877	154918317	94332304	87	14193										
FAM189B	0	genome.wustl.edu	37	chr1	155224455	155224455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaactcaccgagaacccagCccaagacgggcaggacctct	9	17	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155224455	155224455	C	T	SNP	FAM189B	ENST00000361361	human	ensembl	69_37n	-1	known	missense	c.214	p.A72T	1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767	43	0	0	51	19	27.14	-	-	-	T	155224455	C	T	155224455	3	4	228	1	0	0	0	0	1	0	0	0	5559	739	26	4	1840	4	FAM189B	1	155224455	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	306138	155224455	94026166	88	14194										
FDPS	0	genome.wustl.edu	37	chr1	155289611	155289611	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taccttgacctctttggggaCcccagtgtgaccggcaaaat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155289611	155289611	C	-	DEL	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	frame_shift_del	c.951	p.S319fs	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	369	0	0	452	152	24.6	-	-	-	-	155289611	C	-	155289611	7	5	228	1	0	1	0	1	0	0	0	0	5849	506	18	0	985	0	FDPS	1	155289611	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	65156	155289611	93961010	89	14195										
RUSC1	0	genome.wustl.edu	37	chr1	155294489	155294489	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctcgggtcgagctaccccGtgcttcaggcggtcctgcgc	15	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155294489	155294489	G	A	SNP	RUSC1	ENST00000471876	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RUSC1	HGNC	ENSG00000160753	45	0	0	38	19	32.76	-	-	-	A	155294489	G	A	155294489	1	1	228	0	1	0	0	0	0	0	0	0	13836	1160	40	1		1	RUSC1	1	155294489	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4878	155294489	93956132	90	14196										
DAP3	0	genome.wustl.edu	37	chr1	155701155	155701155	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccgatatgcagattgccccCgaggaattagcacttgttca	9	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155701155	155701155	C	T	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	silent	c.852	p.P284	0.573	pfam_Ribosomal_S23/S29_mit	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	217	1	0.46	230	68	22.82	-	-	-	T	155701155	C	T	155701155	2	4	228	1	0	0	0	0	0	0	0	1	4266	639	23	1		1	DAP3	1	155701155	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	406666	155701155	93549466	91	14197										
GON4L	0	genome.wustl.edu	37	chr1	155764894	155764894	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctctgtgtctggttcatcgAggtcttccaggaaattatat	9	9	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155764894	155764894	A	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.1694	p.L565P	0.971	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	122	0	0	130	42	24.42	-	-	-	G	155764894	A	G	155764894	3	3	228	1	0	0	0	0	1	0	0	0	6621	304	11	5	5229	5	GON4L	1	155764894	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	63739	155764894	93485727	92	14198										
ARHGEF2	0	genome.wustl.edu	37	chr1	155920204	155920204	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccagttcctgcctctctcGgtcctcaaagtttcgatgga	8	15	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	155920204	155920204	G	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	silent	c.2776	p.R926	0.994	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	66	0	0	123	34	21.66	-	-	-	T	155920204	G	T	155920204	2	4	228	1	0	0	0	0	0	0	0	1	905	1124	39	3		3	ARHGEF2	1	155920204	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	155310	155920204	93330417	93	14199										
TMEM79	0	genome.wustl.edu	37	chr1	156256189	156256189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctctacttcttcaacctggCcgtgctttccacttacctgc	5	16	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	156256189	156256189	C	T	SNP	TMEM79	ENST00000295694	human	ensembl	69_37n	1	known	missense	c.896	p.A299V	0.993	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472	70	0	0	125	37	22.84	-	-	-	T	156256189	C	T	156256189	3	4	228	1	0	0	0	0	1	0	0	0	16298	739	26	4	902	4	TMEM79	1	156256189	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	335985	156256189	92994432	94	14200										
INSRR	0	genome.wustl.edu	37	chr1	156823775	156823775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccacacgcacagccccacGcagcacggccccaagtgcag	9	20	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	156823775	156823775	G	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.406	p.R136C	0.925	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	24	0	0	28	10	25.64	-	-	-	A	156823775	G	A	156823775	3	1	228	1	0	0	0	0	1	0	0	0	7828	1087	38	1	3570	1	INSRR	1	156823775	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	567586	156823775	92426846	95	14201										
PEAR1	0	genome.wustl.edu	37	chr1	156882381	156882381	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agactggggcctgtgtatgtCccccagggcacagtggtgca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	156882381	156882381	C	-	DEL	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	frame_shift_del	c.2176	p.P727fs	1.000	smart_EGF-like	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	113	0	0	92	41	30.15	-	-	-	-	156882381	C	-	156882381	7	5	228	1	0	1	0	1	0	0	0	0	11785	855	30	0	2238	0	PEAR1	1	156882381	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	58606	156882381	92368240	96	14202										
FCRL2	0	genome.wustl.edu	37	chr1	157740395	157740395	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccagttctgttctccctgGcatttcagaacgatgctgtc	8	12	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	157740395	157740395	G	A	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	silent	c.114	p.C38	0.000	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	117	0	0	93	45	32.61	-	-	-	A	157740395	G	A	157740395	2	1	228	1	0	0	0	0	0	0	0	1	5841	1195	42	4		4	FCRL2	1	157740395	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	858014	157740395	91510226	97	14203										
OR10R2	0	genome.wustl.edu	37	chr1	158449716	158449716	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaatatgttttacttctttCcccctttgcagatcttggca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	158449716	158449716	C	-	DEL	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	frame_shift_del	c.49	p.P18fs	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	375	0	0	493	124	19.62	-	-	-	-	158449716	C	-	158449716	7	5	228	1	0	1	0	1	0	0	0	0	10990	855	30	0	51	0	OR10R2	1	158449716	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	709321	158449716	90800905	98	14204										
SPTA1	0	genome.wustl.edu	37	chr1	158590490	158590490	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaattgtttaagtctttcatCatttacaaatgagggaggtc	8	5	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	158590490	158590490	C	T	SNP	SPTA1	ENST00000484520	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTA1	HGNC	ENSG00000163554	11	0	0	10	9	47.37	-	-	-	T	158590490	C	T	158590490	1	4	228	0	1	0	0	0	0	0	0	0	15207	841	29	2		2	SPTA1	1	158590490	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	140774	158590490	90660131	99	14205										
AIM2	0	genome.wustl.edu	37	chr1	159033297	159033297	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttatggtgctatgaactccAgatgtcagctgtagtttttc	9	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	159033297	159033297	A	G	SNP	AIM2	ENST00000368130	human	ensembl	69_37n	-1	known	silent	c.984	p.S328	0.014	superfamily_NA-bd_OB-fold-like,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,superfamily_NA-bd_OB-fold-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	370	1	0.27	263	109	29.07	-	-	-	G	159033297	A	G	159033297	2	3	228	1	0	0	0	0	0	0	0	1	432	175	7	5		5	AIM2	1	159033297	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	442807	159033297	90217324	100	14206										
KCNJ10	0	genome.wustl.edu	37	chr1	160012018	160012018	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacagggggtgtggttggccGgggggtccagctccagcagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	160012018	160012018	G	-	DEL	KCNJ10	ENST00000368089	human	ensembl	69_37n	-1	known	frame_shift_del	c.305	p.P102fs	0.995	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807	260	0	0	366	111	22.89	-	-	-	-	160012018	G	-	160012018	7	5	228	1	0	1	0	1	0	0	0	0	8098	1116	39	0	838	0	KCNJ10	1	160012018	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	978721	160012018	89238603	101	14207										
ATP1A2	0	genome.wustl.edu	37	chr1	160109736	160109736	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcctcatcttcatctatgAtgaggtccgaaagctcatcc	6	14	5	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	160109736	160109736	A	T	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.2996	p.D999V	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	111	0	0	160	78	32.64	-	-	-	T	160109736	A	T	160109736	3	4	228	1	0	0	0	0	1	0	0	0	1133	333	12	5	3082	5	ATP1A2	1	160109736	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	97718	160109736	89140885	102	14208										
COPA	0	genome.wustl.edu	37	chr1	160280018	160280018	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcattttctgctggattgtaTgacatattgaatactggaaa	9	5	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	160280018	160280018	T	C	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1107	p.S369	0.910	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	339	1	0.29	365	130	26.26	-	-	-	C	160280018	T	C	160280018	2	2	228	1	0	0	0	0	0	0	0	1	3757	1451	51	5		5	COPA	1	160280018	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	170282	160280018	88970603	103	14209										
SLAMF7	0	genome.wustl.edu	37	chr1	160723228	160723228	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtgaatgtcagcaaaccatAaaaaaagtgcttagaagtat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	160723228	160723228	A	-	DEL	SLAMF7	ENST00000484221	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	SLAMF7	HGNC	ENSG00000026751	10	0	0	7	3	30	-	-	-	-	160723228	A	-	160723228	6	5	228	0	1	1	0	1	0	0	0	0	14458	377	13	0		0	SLAMF7	1	160723228	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	443210	160723228	88527393	104	14210										
NDUFS2	0	genome.wustl.edu	37	chr1	161180412	161180412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcggggctcaggcatccagTgggacctgcggaagacccag	15	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	161180412	161180412	T	C	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.898	p.W300R	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	101	0	0	113	45	28.48	-	-	-	C	161180412	T	C	161180412	3	2	228	1	0	0	0	0	1	0	0	0	10364	1696	59	5	932	5	NDUFS2	1	161180412	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	457184	161180412	88070209	105	14211										
PBX1	0	genome.wustl.edu	37	chr1	164789207	164789207	+	RNA	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttattttagtttttatttGgggggggttgctttgcatgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	164789207	164789207	G	-	DEL	PBX1	ENST00000465089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PBX1	HGNC	ENSG00000185630	66	0	0	46	42	46.15	-	-	-	-	164789207	G	-	164789207	6	5	228	0	1	1	0	1	0	0	0	0	11565	1363	47	0		0	PBX1	1	164789207	RNA	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	3608795	164789207	84461414	106	14212										
DCAF6	0	genome.wustl.edu	37	chr1	167973842	167973842	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgatttggaagtgagtgaaActgcaatggaagtagatact	12	4	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	167973842	167973842	A	G	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.1189	p.T397A	0.130	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	131	0	0	117	61	34.27	-	-	-	G	167973842	A	G	167973842	3	3	228	1	0	0	0	0	1	0	0	0	4306	43	2	5	1227	5	DCAF6	1	167973842	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3184635	167973842	81276779	107	14213										
GPR161	0	genome.wustl.edu	37	chr1	168054868	168054869	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcggcggcccccgaagccgINSccccccgggacagtccgtgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	168054868	168054869	-	C	INS	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1551_1550	p.G518fs	0.000:0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	35	0	0	78	17	17.89	-	-	-	C	168054869	-	C	168054868	7	5	228	1	0	1	1	0	0	0	0	0	6715	1074	38	0	102	0	GPR161	1	168054868	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	81026	168054868	81195753	108	14214										
KIFAP3	0	genome.wustl.edu	37	chr1	170004605	170004605	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttatacttacctggagaaacAaaaaaagatgtaaattatgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	170004605	170004605	A	-	DEL	KIFAP3	ENST00000361580	human	ensembl	69_37n	-1	known	frame_shift_del	c.607	p.C203fs	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945	100	0	0	75	34	30.36	-	-	-	-	170004605	A	-	170004605	7	5	228	1	0	1	0	1	0	0	0	0	8363	130	5	0	1831	0	KIFAP3	1	170004605	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	1949737	170004605	79246016	109	14215										
FMO2	0	genome.wustl.edu	37	chr1	171168502	171168502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggtatggagaggttcaaaGgccaatatttccatagccgc	11	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	171168502	171168502	G	T	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	missense	c.502	p.G168C	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	174	0	0	177	52	22.71	-	-	-	T	171168502	G	T	171168502	3	4	228	1	0	0	0	0	1	0	0	0	6001	1000	35	4	516	4	FMO2	1	171168502	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1163897	171168502	78082119	110	14216										
FMO1	0	genome.wustl.edu	37	chr1	171249982	171249982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccgaatctttgactcgggcTacccatgggacatggtgttc	12	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	171249982	171249982	T	C	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.685	p.Y229H	0.221	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	100	0	0	88	37	29.6	-	-	-	C	171249982	T	C	171249982	3	2	228	1	0	0	0	0	1	0	0	0	6000	1522	53	5	703	5	FMO1	1	171249982	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	81480	171249982	78000639	111	14217										
DNM3	0	genome.wustl.edu	37	chr1	171956821	171956821	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccgagtttctacattgcaaAggaaagaaatttacagattt	8	6	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	171956821	171956821	A	C	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.261	p.K87N	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	342	0	0	287	103	26.21	-	-	-	C	171956821	A	C	171956821	3	2	228	1	0	0	0	0	1	0	0	0	4708	69	3	5	271	5	DNM3	1	171956821	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	706839	171956821	77293800	112	14218										
SERPINC1	0	genome.wustl.edu	37	chr1	173884179	173884179	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtggccaagagaaaggctAaatcctttgaaccaagtaca	10	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	173884179	173884179	A	G	SNP	SERPINC1	ENST00000494024	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SERPINC1	HGNC	ENSG00000117601	28	0	0	24	15	38.46	-	-	-	G	173884179	A	G	173884179	1	3	228	0	1	0	0	0	0	0	0	0	14197	377	13	5		5	SERPINC1	1	173884179	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1927358	173884179	75366442	113	14219										
TNR	0	genome.wustl.edu	37	chr1	175372477	175372477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcagttccctgcagtcctCgccagtgtagggctcttcac	9	16	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	175372477	175372477	C	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.775	p.E259K	1.000	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	68	0	0	77	48	38.4	-	-	-	T	175372477	C	T	175372477	3	4	228	1	0	0	0	0	1	0	0	0	16433	893	31	1	3381	1	TNR	1	175372477	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1488298	175372477	73878144	114	14220										
PAPPA2	0	genome.wustl.edu	37	chr1	176564613	176564613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctactcctggaaccgcaggGatgggctctgtcacgtggag	15	11	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	176564613	176564613	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.1873	p.D625N	1.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	123	0	0	142	41	22.4	-	-	-	A	176564613	G	A	176564613	3	1	228	1	0	0	0	0	1	0	0	0	11506	1174	41	2	1879	2	PAPPA2	1	176564613	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1192136	176564613	72686008	115	14221										
PAPPA2	0	genome.wustl.edu	37	chr1	176668464	176668464	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatcttgctggaaaacaaggAgtcagtgcacctgggcccct	12	11	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	176668464	176668464	A	C	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.2975	p.E992A	0.941	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	795	1	0.13	701	240	25.48	-	-	-	C	176668464	A	C	176668464	3	2	228	1	0	0	0	0	1	0	0	0	11506	304	11	5	3054	5	PAPPA2	1	176668464	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	103851	176668464	72582157	116	14222										
ASTN1	0	genome.wustl.edu	37	chr1	176913086	176913087	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctctaggcattgattctccaINSggggcacagtggccaccaca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	176913086	176913087	-	T	INS	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2342_2341	p.L781fs	0.939:0.787	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	146	0	0	110	53	32.52	-	-	-	T	176913087	-	T	176913086	7	5	228	1	0	1	1	0	0	0	0	0	1068	188	7	0	1610	0	ASTN1	1	176913086	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	244622	176913086	72337535	117	14223										
ASTN1	0	genome.wustl.edu	37	chr1	177001650	177001650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcagggagtcgagggtgcgCgtgacctggctggcaaagtc	18	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	177001650	177001650	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.807	p.T269	0.545	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	133	0	0	160	67	29.13	-	-	-	T	177001650	C	T	177001650	2	4	228	1	0	0	0	0	0	0	0	1	1068	755	27	1		1	ASTN1	1	177001650	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	88564	177001650	72248971	118	14224										
CEP350	0	genome.wustl.edu	37	chr1	180068091	180068091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatgatgaaatttggaagaAagaaaagagaccgagtggat	12	2	0	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	180068091	180068091	A	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.9160	p.K3054E	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	154	0	0	120	50	29.24	-	-	-	G	180068091	A	G	180068091	3	3	228	1	0	0	0	0	1	0	0	0	3283	15	1	5	9302	5	CEP350	1	180068091	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3066441	180068091	69182530	119	14225										
DHX9	0	genome.wustl.edu	37	chr1	182846013	182846013	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagcattaccataaacgatGttgtttatgtcattgactcc	6	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	182846013	182846013	G	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.2173	p.V725F	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	107	0	0	79	40	33.61	-	-	-	T	182846013	G	T	182846013	3	4	228	1	0	0	0	0	1	0	0	0	4552	1377	48	4	2243	4	DHX9	1	182846013	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2777922	182846013	66404608	120	14226										
RGL1	0	genome.wustl.edu	37	chr1	183775617	183775617	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ataaaggagcaagatggctaGgggtgagtaaagctggcgag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	183775617	183775617	G	-	DEL	RGL1	ENST00000304685	human	ensembl	69_37n	1	known	frame_shift_del	c.241	p.V82fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344	91	0	0	85	27	24.11	-	-	-	-	183775617	G	-	183775617	7	5	228	1	0	1	0	1	0	0	0	0	13359	1000	35	0	247	0	RGL1	1	183775617	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	929604	183775617	65475004	121	14227										
FAM5C	0	genome.wustl.edu	37	chr1	190067103	190067103	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaactgttccacaaaagcacTgtaaaaactccttcaagatt	4	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	190067103	190067103	T	C	SNP	FAM5C	ENST00000484105	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAM5C	HGNC	ENSG00000162670	264	0	0	159	84	34.57	-	-	-	C	190067103	T	C	190067103	1	2	228	0	1	0	0	0	0	0	0	0	5639	1595	55	5		5	FAM5C	1	190067103	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	6291486	190067103	59183518	122	14228										
PTPRC	0	genome.wustl.edu	37	chr1	198675971	198675971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaatgtggaaacaatacttGcacaaacaatgaggtgcata	10	6	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	198675971	198675971	G	A	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.794	p.C265Y	0.044	pirsf_Leukocyte_common_ag,pfam_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	340	0	0	243	92	27.38	-	-	-	A	198675971	G	A	198675971	3	1	228	1	0	0	0	0	1	0	0	0	12880	1319	46	4	829	4	PTPRC	1	198675971	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8608868	198675971	50574650	123	14229										
PTPRC	0	genome.wustl.edu	37	chr1	198704277	198704277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaagtgtgcagaatactggCcgtcaatggaagagggcact	13	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	198704277	198704277	C	T	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.2299	p.P767S	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	64	0	0	75	21	21.88	-	-	-	T	198704277	C	T	198704277	3	4	228	1	0	0	0	0	1	0	0	0	12880	739	26	4	2390	4	PTPRC	1	198704277	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	28306	198704277	50546344	124	14230										
PKP1	0	genome.wustl.edu	37	chr1	201289408	201289408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccccaggaacctgagctcgGccgatgcaggccgccagacc	12	18	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	201289408	201289408	G	A	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	missense	c.1309	p.A437T	0.274	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	21	0	0	47	26	35.62	-	-	-	A	201289408	G	A	201289408	3	1	228	1	0	0	0	0	1	0	0	0	12058	1203	42	4	1339	4	PKP1	1	201289408	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2585131	201289408	47961213	125	14231										
RNPEP	0	genome.wustl.edu	37	chr1	201958658	201958658	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcggctgaagttggacccAggtaggagacaaagacccca	12	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	201958658	201958658	A	G	SNP	RNPEP	ENST00000295640	human	ensembl	69_37n	1	known	missense	c.736	p.R246G	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393	111	0	0	163	63	27.75	-	-	-	G	201958658	A	G	201958658	3	3	228	1	0	0	0	0	1	0	0	0	13595	202	7	5	746	5	RNPEP	1	201958658	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	669250	201958658	47291963	126	14232										
GPR37L1	0	genome.wustl.edu	37	chr1	202092540	202092540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggcattgtgggcaacctgtCggtcatgtgcatcgtgtggc	16	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	202092540	202092540	C	T	SNP	GPR37L1	ENST00000367282	human	ensembl	69_37n	1	known	missense	c.449	p.S150L	0.999	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37L1	HGNC	ENSG00000170075	63	0	0	76	24	24	-	-	-	T	202092540	C	T	202092540	3	4	228	1	0	0	0	0	1	0	0	0	6742	893	31	1	451	1	GPR37L1	1	202092540	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	133882	202092540	47158081	127	14233										
CHI3L1	0	genome.wustl.edu	37	chr1	203152862	203152862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatgggtgcgcagaaatggCggtactgacttgatgaaagt	14	7	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	203152862	203152862	C	T	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	silent	c.372	p.P124	0.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	112	1	0.88	103	44	29.93	-	-	-	T	203152862	C	T	203152862	2	4	228	1	0	0	0	0	0	0	0	1	3369	755	27	1		1	CHI3L1	1	203152862	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1060322	203152862	46097759	128	14234										
SOX13	0	genome.wustl.edu	37	chr1	204082087	204082087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcccagctggccctggatgGcgttggcaccatggtgaact	14	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	204082087	204082087	G	A	SNP	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	missense	c.44	p.G15D	0.996	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	19	0	0	28	7	20	-	-	-	A	204082087	G	A	204082087	3	1	228	1	0	0	0	0	1	0	0	0	15033	1203	42	4	46	4	SOX13	1	204082087	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	929225	204082087	45168534	129	14235										
RBBP5	0	genome.wustl.edu	37	chr1	205073020	205073020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccgtataaatatattcccCtcgcctatcaaaagatgcca	4	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	205073020	205073020	C	T	SNP	RBBP5	ENST00000264515	human	ensembl	69_37n	-1	known	missense	c.487	p.G163R	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222	414	0	0	452	148	24.67	-	-	-	T	205073020	C	T	205073020	3	4	228	1	0	0	0	0	1	0	0	0	13185	681	24	4	1169	4	RBBP5	1	205073020	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	990933	205073020	44177601	130	14236										
PM20D1	0	genome.wustl.edu	37	chr1	205819040	205819040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acccgggttcacctttcagcGcctctttcatcgcgacgcgt	9	16	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	205819040	205819040	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	missense	c.161	p.A54V	0.998	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	65	0	0	104	33	23.91	-	-	-	A	205819040	G	A	205819040	3	1	228	1	0	0	0	0	1	0	0	0	12202	1087	38	1	1399	1	PM20D1	1	205819040	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	746020	205819040	43431581	131	14237										
DYRK3	0	genome.wustl.edu	37	chr1	206821776	206821776	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggacagcctctcttccctggAgaggatgaaggagaccagtt	13	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	206821776	206821776	A	C	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	silent	c.1233	p.G411	0.897	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	433	1	0.23	498	165	24.89	-	-	-	C	206821776	A	C	206821776	2	2	228	1	0	0	0	0	0	0	0	1	4892	291	11	5		5	DYRK3	1	206821776	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1002736	206821776	42428845	132	14238										
KCNH1	0	genome.wustl.edu	37	chr1	211192496	211192496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagatcaagatgatccaatCccacgtggtcttaaaaacac	6	11	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	211192496	211192496	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.661	p.D221N	1.000	prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	201	0	0	197	87	30.63	-	-	-	T	211192496	C	T	211192496	3	4	228	1	0	0	0	0	1	0	0	0	8085	855	30	2	2332	2	KCNH1	1	211192496	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4370720	211192496	38058125	133	14239										
PROX1	0	genome.wustl.edu	37	chr1	214171142	214171142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatcattccgaaccccctgGacacctttggcaatgtgcag	8	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	214171142	214171142	G	A	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.1264	p.D422N	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	317	0	0	338	141	29.31	-	-	-	A	214171142	G	A	214171142	3	1	228	1	0	0	0	0	1	0	0	0	12641	1174	41	2	1266	2	PROX1	1	214171142	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2978646	214171142	35079479	134	14240										
USH2A	0	genome.wustl.edu	37	chr1	216262358	216262358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcaaaaagtacttacctgTatatatcccatccagagtga	5	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	216262358	216262358	T	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.4882	p.T1628A	0.896	pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	349	0	0	222	110	33.13	-	-	-	C	216262358	T	C	216262358	3	2	228	1	0	0	0	0	1	0	0	0	17133	1638	57	5	10926	5	USH2A	1	216262358	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2091216	216262358	32988263	135	14241										
LYPLAL1	0	genome.wustl.edu	37	chr1	219385044	219385044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatggattcttacaaagctgCcaggagaaatggaaaaacaa	9	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	219385044	219385044	C	T	SNP	LYPLAL1	ENST00000366928	human	ensembl	69_37n	1	known	missense	c.688	p.P230S	0.998	NULL	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353	235	0	0	192	69	26.44	-	-	-	T	219385044	C	T	219385044	3	4	228	1	0	0	0	0	1	0	0	0	9185	739	26	4	706	4	LYPLAL1	1	219385044	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3122686	219385044	29865577	136	14242										
SLC30A10	0	genome.wustl.edu	37	chr1	220101149	220101149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaccgaaaggcacctgctaCgtttgcgaacacggtcgccc	10	15	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	220101149	220101149	C	T	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.634	p.V212I	0.882	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	15	0	0	5	4	44.44	-	-	-	T	220101149	C	T	220101149	3	4	228	1	0	0	0	0	1	0	0	0	14643	536	19	1	839	1	SLC30A10	1	220101149	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	716105	220101149	29149472	137	14243										
EPRS	0	genome.wustl.edu	37	chr1	220170500	220170500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagttttctccttatattcaGctttcaaagacaaaagctgt	5	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	220170500	220170500	G	A	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.2366	p.A789V	1.000	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	199	0	0	182	70	27.78	-	-	-	A	220170500	G	A	220170500	3	1	228	1	0	0	0	0	1	0	0	0	5228	971	34	4	2232	4	EPRS	1	220170500	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	69351	220170500	29080121	138	14244										
EPRS	0	genome.wustl.edu	37	chr1	220197683	220197683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggagtatcatccacataaGccttcccttcttgaattagc	6	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	220197683	220197683	G	A	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.866	p.A289V	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_Ib_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	81	0	0	96	36	27.27	-	-	-	A	220197683	G	A	220197683	3	1	228	1	0	0	0	0	1	0	0	0	5228	971	34	4	3772	4	EPRS	1	220197683	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	27183	220197683	29052938	139	14245										
IARS2	0	genome.wustl.edu	37	chr1	220316679	220316679	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagcaaagtcatgcacatttAaaaaaaagtgtctaaattaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	220316679	220316679	A	-	DEL	IARS2	ENST00000467924	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	IARS2	HGNC	ENSG00000067704	15	0	0	13	4	23.53	-	-	-	-	220316679	A	-	220316679	6	5	228	0	1	1	0	1	0	0	0	0	7528	377	13	0		0	IARS2	1	220316679	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	118996	220316679	28933942	140	14246										
DUSP10	0	genome.wustl.edu	37	chr1	221913067	221913067	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgccactactaccctgtcgTctaaaggagacggaggcatg	12	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	221913067	221913067	T	A	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.20	p.D7V	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	142	0	0	134	66	33	-	-	-	A	221913067	T	A	221913067	3	1	228	1	0	0	0	0	1	0	0	0	4845	1667	58	5	1440	5	DUSP10	1	221913067	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1596388	221913067	27337554	141	14247										
MIA3	0	genome.wustl.edu	37	chr1	222832963	222832963	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgatgtattatctttttcaGatcgctacccatgagaagaa	8	7	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	222832963	222832963	G	T	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	splice_site	c.4771-1	e21-1	1.000	-	-	-	no_errors	MIA3	HGNC	ENSG00000154305	164	0	0	162	72	30.77	-	-	-	T	222832963	G	T	222832963	5	4	228	1	0	0	0	0	0	0	1	0	9636	956	33	2	4852	2	MIA3	1	222832963	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	919896	222832963	26417658	142	14248										
AIDA	0	genome.wustl.edu	37	chr1	222843145	222843145	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggtacggcttgcttcctgCctgttgaagggtgaatatgc	14	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	222843145	222843145	C	T	SNP	AIDA	ENST00000474863	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.871	-	-	-	no_errors	AIDA	HGNC	ENSG00000186063	25	0	0	13	11	45.83	-	-	-	T	222843145	C	T	222843145	1	4	228	0	1	0	0	0	0	0	0	0	423	754	26	4		4	AIDA	1	222843145	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	10182	222843145	26407476	143	14249										
EPHX1	0	genome.wustl.edu	37	chr1	226032230	226032230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggacgacctgctgaccaacGtcatgctctactggacaaca	9	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	226032230	226032230	G	A	SNP	EPHX1	ENST00000272167	human	ensembl	69_37n	1	known	missense	c.1072	p.V358I	0.966	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	56	0	0	65	24	26.97	-	-	-	A	226032230	G	A	226032230	3	1	228	1	0	0	0	0	1	0	0	0	5216	1145	40	1	1098	1	EPHX1	1	226032230	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3189085	226032230	23218391	144	14250										
CDC42BPA	0	genome.wustl.edu	37	chr1	227299877	227299877	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagcttcctactggtaagaaCgagaattatgaatagtaggt	10	5	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	227299877	227299877	C	T	SNP	CDC42BPA	ENST00000466538	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	81	0	0	95	22	18.8	-	-	-	T	227299877	C	T	227299877	1	4	228	0	1	0	0	0	0	0	0	0	3101	551	19	1		1	CDC42BPA	1	227299877	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1267647	227299877	21950744	145	14251										
ZNF678	0	genome.wustl.edu	37	chr1	227751427	227751427	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccgaaagccggaaaacggTgagagttcccgggagggtgt	16	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	227751427	227751427	T	C	SNP	ZNF678	ENST00000397097	human	ensembl	69_37n	1	known	splice_site	c.30+2	e1+2	0.069	-	-	-	no_errors	ZNF678	HGNC	ENSG00000181450	8	0	0	11	5	31.25	-	-	-	C	227751427	T	C	227751427	5	2	228	1	0	0	0	0	0	0	1	0	18181	1710	59	5	34	5	ZNF678	1	227751427	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	451550	227751427	21499194	146	14252										
OBSCN	0	genome.wustl.edu	37	chr1	228529166	228529166	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catcgacctgaacgaccaggTggagggggatgaccgcgcct	15	12	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	228529166	228529166	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.17885	p.V5962A	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	9	0	0	4	4	50	-	-	-	C	228529166	T	C	228529166	3	2	228	1	0	0	0	0	1	0	0	0	10885	1696	59	5	18175	5	OBSCN	1	228529166	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	777739	228529166	20721455	147	14253										
ACTA1	0	genome.wustl.edu	37	chr1	229568111	229568111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccaggcgcatgatggcgtgCggcagcgcgtagccctcata	14	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	229568111	229568111	C	T	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	silent	c.522	p.P174	0.571	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	12	0	0	21	10	32.26	-	-	-	T	229568111	C	T	229568111	2	4	228	1	0	0	0	0	0	0	0	1	191	755	27	1		1	ACTA1	1	229568111	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1038945	229568111	19682510	148	14254										
PGBD5	0	genome.wustl.edu	37	chr1	230513306	230513306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctgagcaactgcagctcaGgtcctgcagagtccccgaga	12	13	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	230513306	230513306	G	T	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.62	p.P21H	0.005	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	38	0	0	41	19	31.67	-	-	-	T	230513306	G	T	230513306	3	4	228	1	0	0	0	0	1	0	0	0	11858	1000	35	4	1333	4	PGBD5	1	230513306	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	945195	230513306	18737315	149	14255										
CAPN9	0	genome.wustl.edu	37	chr1	230904950	230904950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagtgctgcagaatctgagGcccggacgccgtttggtctt	14	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	230904950	230904950	G	A	SNP	CAPN9	ENST00000271971	human	ensembl	69_37n	1	known	missense	c.730	p.A244T	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN9	HGNC	ENSG00000135773	154	0	0	185	77	29.39	-	-	-	A	230904950	G	A	230904950	3	1	228	1	0	0	0	0	1	0	0	0	2657	1203	42	4	752	4	CAPN9	1	230904950	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	391644	230904950	18345671	150	14256										
ARV1	0	genome.wustl.edu	37	chr1	231132973	231132973	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtatggaatgggatgttggAagtgattatgccatctttaa	12	3	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	231132973	231132973	A	G	SNP	ARV1	ENST00000450711	human	ensembl	69_37n	1	known	missense	c.770	p.E257G	0.989	NULL	pfam_Arv1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARV1	HGNC	ENSG00000173409	361	1	0.28	340	150	30.61	-	-	-	G	231132973	A	G	231132973	3	3	228	1	0	0	0	0	1	0	0	0	1006	233	9	5	798	5	ARV1	1	231132973	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	228023	231132973	18117648	151	14257										
EXOC8	0	genome.wustl.edu	37	chr1	231473410	231473410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgctgcgagagctgcttcaCgtacagccgcgcctcaaaac	10	15	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	231473410	231473410	C	T	SNP	EXOC8	ENST00000360394	human	ensembl	69_37n	-1	known	missense	c.82	p.V28M	1.000	pfam_Vps51	pfam_Vps51,superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903	19	0	0	21	9	30	-	-	-	T	231473410	C	T	231473410	3	4	228	1	0	0	0	0	1	0	0	0	5347	536	19	1	2099	1	EXOC8	1	231473410	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	340437	231473410	17777211	152	14258										
PCNXL2	0	genome.wustl.edu	37	chr1	233161108	233161108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgtcctcctcgtcgccctcCatgatggcttctacctccct	6	19	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	233161108	233161108	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.4389	p.M1463I	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	125	0	0	125	47	27.33	-	-	-	T	233161108	C	T	233161108	3	4	228	1	0	0	0	0	1	0	0	0	11665	594	21	4	2060	4	PCNXL2	1	233161108	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1687698	233161108	16089513	153	14259										
TARBP1	0	genome.wustl.edu	37	chr1	234536962	234536963	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgagtgggtgaaatgttgcINSaaaaaagaaatgctcctgaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	234536962	234536963	-	A	INS	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4036_4035	p.A1345fs	0.373:0.543	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	62	0	0	90	31	25.62	-	-	-	A	234536963	-	A	234536962	7	5	228	1	0	1	1	0	0	0	0	0	15647	710	25	0	853	0	TARBP1	1	234536962	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	1375854	234536962	14713659	154	14260										
TBCE	0	genome.wustl.edu	37	chr1	235577891	235577891	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttacaattggaaataaacCtgtggagactatcggttttg	10	5	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	235577891	235577891	C	A	SNP	TBCE	ENST00000543662	human	ensembl	69_37n	1	known	missense	c.329	p.P110H	0.992	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ribosomal_S21e,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCE	HGNC	ENSG00000116957	21	0	0	28	14	33.33	-	-	-	A	235577891	C	A	235577891	3	1	228	1	0	0	0	0	1	0	0	0	15729	681	24	4	339	4	TBCE	1	235577891	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1040929	235577891	13672730	155	14261										
LYST	0	genome.wustl.edu	37	chr1	235945333	235945333	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaaatgttttattgctatcAgatgacaaacttgtttttct	5	6	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	235945333	235945333	A	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.4917	p.S1639	0.879	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	94	0	0	74	26	26	-	-	-	G	235945333	A	G	235945333	2	3	228	1	0	0	0	0	0	0	0	1	9195	175	7	5		5	LYST	1	235945333	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	367442	235945333	13305288	156	14262										
KMO	0	genome.wustl.edu	37	chr1	241752051	241752051	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtattatttaacttacaggTttgtgtcttcctgtgttctc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	241752051	241752051	T	-	DEL	KMO	ENST00000366559	human	ensembl	69_37n	1	known	frame_shift_del	c.1017	p.L340fs	0.899	NULL	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	97	0	0	84	28	24.56	-	-	-	-	241752051	T	-	241752051	7	5	228	1	0	1	0	1	0	0	0	0	8477	1739	60	0	1063	0	KMO	1	241752051	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	5806718	241752051	7498570	157	14263										
CEP170	0	genome.wustl.edu	37	chr1	243328663	243328665	+	In_Frame_Del	DEL	AAG	AAG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acttgcagatgttaatgctaAagaagaaggagtagaggaag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	243328663	243328665	AAG	-	DEL	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	in_frame_del	c.2599_2597	p.S866in_frame_del	0.001:0.000:0.785	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	222	0	0	200	61	23.28	-	-	-	-	243328665	AAG	-	243328663	7	5	228	1	0	1	0	1	0	0	0	0	3279	11	1	0	2217	0	CEP170	1	243328663	In_Frame_Del	DEL	AAG	TCGA-A8-A09Z-01A-11W-A019-09	1576612	243328663	5921958	158	14264										
SDCCAG8	0	genome.wustl.edu	37	chr1	243419406	243419406	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgctccccggccacaggcctGttgttctcggaagggagaaa	13	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	243419406	243419406	G	T	SNP	SDCCAG8	ENST00000490065	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.847	-	-	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	15	0	0	16	9	36	-	-	-	T	243419406	G	T	243419406	1	4	228	0	1	0	0	0	0	0	0	0	14047	1392	48	4		4	SDCCAG8	1	243419406	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	90743	243419406	5831215	159	14265										
KIF26B	0	genome.wustl.edu	37	chr1	245530605	245530605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcggtggccatccaggctcAccagtacctggatggcacct	11	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	245530605	245530605	A	G	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.935	p.H312R	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	10	0	0	13	6	31.58	-	-	-	G	245530605	A	G	245530605	3	3	228	1	0	0	0	0	1	0	0	0	8347	159	6	5	945	5	KIF26B	1	245530605	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2111199	245530605	3720016	160	14266										
AHCTF1	0	genome.wustl.edu	37	chr1	247024358	247024358	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttcaaggtcttccggtgaCggtgcatcctgatactctaa	9	11	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	247024358	247024358	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.4002	p.P1334	0.045	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	76	0	0	98	30	23.44	-	-	-	T	247024358	C	T	247024358	2	4	228	1	0	0	0	0	0	0	0	1	408	523	19	1		1	AHCTF1	1	247024358	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1493753	247024358	2226263	161	14267										
NLRP3	0	genome.wustl.edu	37	chr1	247587865	247587865	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgtggagatcctgggtttcTccgaggccaaaaggaaagag	14	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	247587865	247587865	T	C	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.1120	p.S374P	0.994	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	143	0	0	145	64	30.62	-	-	-	C	247587865	T	C	247587865	3	2	228	1	0	0	0	0	1	0	0	0	10550	1551	54	5	1130	5	NLRP3	1	247587865	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	563507	247587865	1662756	162	14268										
OR2W5	0	genome.wustl.edu	37	chr1	247655209	247655209	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaccatcatctacgtgtaccTgaagccggccaacagctact	7	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	247655209	247655209	T	C	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.920	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	179	0	0	197	84	29.79	-	-	-	C	247655209	T	C	247655209	1	2	228	0	1	0	0	0	0	0	0	0	11107	1567	55	5		5	OR2W5	1	247655209	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	67344	247655209	1595412	163	14269										
OR2G3	0	genome.wustl.edu	37	chr1	247769170	247769170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaagaagacgatcacttacGgtggttgtgtggcgcaactc	12	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	247769170	247769170	G	A	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.283	p.G95S	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	746	3	0.4	722	332	31.47	-	-	-	A	247769170	G	A	247769170	3	1	228	1	0	0	0	0	1	0	0	0	11072	1116	39	1	285	1	OR2G3	1	247769170	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	113961	247769170	1481451	164	14270										
OR2G3	0	genome.wustl.edu	37	chr1	247769658	247769658	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctatggcaccataatctaCgtgtacctgcaacctagtga	7	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	247769658	247769658	C	T	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	silent	c.771	p.Y257	0.101	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	187	0	0	169	53	23.77	-	-	-	T	247769658	C	T	247769658	2	4	228	1	0	0	0	0	0	0	0	1	11072	547	19	1		1	OR2G3	1	247769658	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	488	247769658	1480963	165	14271										
OR14C36	0	genome.wustl.edu	37	chr1	248512932	248512932	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcctcccctctttaaccctAttatttacagtcttagaaat	3	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	248512932	248512932	A	G	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	missense	c.856	p.I286V	0.011	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	293	0	0	183	67	26.8	-	-	-	G	248512932	A	G	248512932	3	3	228	1	0	0	0	0	1	0	0	0	11019	449	16	5	858	5	OR14C36	1	248512932	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	743274	248512932	737689	166	14272										
ZNF692	0	genome.wustl.edu	37	chr1	249150608	249150608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtgggaaggtctctggtgGgggtcccaccctcctgcagg	17	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	1	249150608	249150608	G	T	SNP	ZNF692	ENST00000451251	human	ensembl	69_37n	-1	known	missense	c.553	p.P185T	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163	88	0	0	96	46	32.17	-	-	-	T	249150608	G	T	249150608	3	4	228	1	0	0	0	0	1	0	0	0	18193	1232	43	4	1049	4	ZNF692	1	249150608	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	637676	249150608	100013	167	14273										
PXDN	0	genome.wustl.edu	37	chr2	1657460	1657460	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcctgaatgagctgcaatgTccgttcaaagatttctcccg	8	12	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	1657460	1657460	T	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.2044	p.T682S	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	28	0	0	26	21	44.68	-	-	-	A	1657460	T	A	1657460	3	1	228	1	0	0	0	0	1	0	0	0	12930	1667	58	5	2427	5	PXDN	2	1657460	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09		1657460	241541913	168	14274										
RSAD2	0	genome.wustl.edu	37	chr2	7018229	7018229	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagccaaaacatcctttgtgCtgccccttgaggaagcaaag	9	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	7018229	7018229	C	T	SNP	RSAD2	ENST00000382040	human	ensembl	69_37n	1	known	silent	c.298	p.L100	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB	pfam_rSAM,smart_Elp3/MiaB/NifB	-	no_errors	RSAD2	HGNC	ENSG00000134321	85	0	0	65	40	37.74	-	-	-	T	7018229	C	T	7018229	2	4	228	1	0	0	0	0	0	0	0	1	13781	796	28	4		4	RSAD2	2	7018229	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5360769	7018229	236181144	169	14275										
CPSF3	0	genome.wustl.edu	37	chr2	9607849	9607849	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcccaggtgcagtacagaaGgtttctaaaaaattagaaat	8	6	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	9607849	9607849	G	T	SNP	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	missense	c.1800	p.K600N	0.814	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	96	0	0	78	42	35	-	-	-	T	9607849	G	T	9607849	3	4	228	1	0	0	0	0	1	0	0	0	3856	991	35	4	1862	4	CPSF3	2	9607849	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2589620	9607849	233591524	170	14276										
GRHL1	0	genome.wustl.edu	37	chr2	10132201	10132201	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcacagttttcaaaccctTcattgatctcgatactcagc	4	12	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	10132201	10132201	T	C	SNP	GRHL1	ENST00000324907	human	ensembl	69_37n	1	known	missense	c.1388	p.F463S	0.992	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317	57	0	0	42	26	38.24	-	-	-	C	10132201	T	C	10132201	3	2	228	1	0	0	0	0	1	0	0	0	6814	1783	62	5	1430	5	GRHL1	2	10132201	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	524352	10132201	233067172	171	14277										
PQLC3	0	genome.wustl.edu	37	chr2	11304361	11304361	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttggttcatccttgccctgCagaagtggatcatagacctg	10	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	11304361	11304361	C	T	SNP	PQLC3	ENST00000295083	human	ensembl	69_37n	1	known	nonsense	c.328	p.Q110*	1.000	pirsf_MannP-dilichol_defect-1	pirsf_MannP-dilichol_defect-1	-	no_errors	PQLC3	HGNC	ENSG00000162976	43	0	0	28	16	36.36	-	-	-	T	11304361	C	T	11304361	4	4	228	1	0	0	0	0	0	1	0	0	12497	711	25	4	342	4	PQLC3	2	11304361	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1172160	11304361	231895012	172	14278										
E2F6	0	genome.wustl.edu	37	chr2	11587798	11587798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctctcagatgaagaggtccCgacaccttcagaccttttgt	9	12	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	11587798	11587798	C	A	SNP	E2F6	ENST00000381525	human	ensembl	69_37n	-1	known	missense	c.754	p.G252W	0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F6	HGNC	ENSG00000169016	203	0	0	107	96	47.29	-	-	-	A	11587798	C	A	11587798	3	1	228	1	0	0	0	0	1	0	0	0	4906	652	23	3	99	3	E2F6	2	11587798	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	283437	11587798	231611575	173	14279										
LPIN1	0	genome.wustl.edu	37	chr2	11905715	11905715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggtgtttgtcaccgtgaaGgagctctacaaggggctgaa	14	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	11905715	11905715	G	T	SNP	LPIN1	ENST00000449576	human	ensembl	69_37n	1	known	missense	c.195	p.K65N	1.000	pfam_Lipin_N	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	129	0	0	107	66	38.15	-	-	-	T	11905715	G	T	11905715	3	4	228	1	0	0	0	0	1	0	0	0	8984	991	35	4	50	4	LPIN1	2	11905715	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	317917	11905715	231293658	174	14280										
SMC6	0	genome.wustl.edu	37	chr2	17884469	17884469	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccttttaagaagttcctcAttgtgtttaatatctttttc	4	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	17884469	17884469	A	G	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	silent	c.2175	p.N725	0.999	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	153	0	0	74	63	45.65	-	-	-	G	17884469	A	G	17884469	2	3	228	1	0	0	0	0	0	0	0	1	14876	214	8	5		5	SMC6	2	17884469	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5978754	17884469	225314904	175	14281										
APOB	0	genome.wustl.edu	37	chr2	21247975	21247975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatcagcttctcaacactgaGcattattccatttaccatat	3	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	21247975	21247975	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.2266	p.L756F	0.001	pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	101	0	0	66	45	40.54	-	-	-	A	21247975	G	A	21247975	3	1	228	1	0	0	0	0	1	0	0	0	787	971	34	4	11481	4	APOB	2	21247975	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3363506	21247975	221951398	176	14282										
MFSD2B	0	genome.wustl.edu	37	chr2	24246078	24246078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcgtggcctttgtatctggcGtgagcattgctgtgtccttg	13	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	24246078	24246078	G	A	SNP	MFSD2B	ENST00000338315	human	ensembl	69_37n	1	known	missense	c.1138	p.V380M	0.007	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639	68	0	0	58	44	43.14	-	-	-	A	24246078	G	A	24246078	3	1	228	1	0	0	0	0	1	0	0	0	9602	1145	40	1	1180	1	MFSD2B	2	24246078	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2998103	24246078	218953295	177	14283										
MAPRE3	0	genome.wustl.edu	37	chr2	27248767	27248767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctggtggacttgaagctgaCagtggatgggctggagaagg	19	5	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	27248767	27248767	C	T	SNP	MAPRE3	ENST00000233121	human	ensembl	69_37n	1	known	missense	c.644	p.T215I	0.990	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764	137	0	0	72	49	40.5	-	-	-	T	27248767	C	T	27248767	3	4	228	1	0	0	0	0	1	0	0	0	9367	478	17	4	662	4	MAPRE3	2	27248767	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3002689	27248767	215950606	178	14284										
SLC5A6	0	genome.wustl.edu	37	chr2	27423439	27423439	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaggaaacaggccagtgtcGaggtggtcctgcaaacacag	13	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	27423439	27423439	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	silent	c.1773	p.L591	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	69	0	0	61	39	39	-	-	-	A	27423439	G	A	27423439	2	1	228	1	0	0	0	0	0	0	0	1	14758	1045	37	1		1	SLC5A6	2	27423439	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	174672	27423439	215775934	179	14285										
PPM1G	0	genome.wustl.edu	37	chr2	27604481	27604483	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactgctagtctcgcttggcCttcttcttcttgtcgctgtt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	27604481	27604483	CTT	-	DEL	PPM1G	ENST00000344034	human	ensembl	69_37n	-1	known	in_frame_del	c.1626_1624	p.K542in_frame_del	0.998:1.000:1.000	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1G	HGNC	ENSG00000115241	177	0	0	83	46	35.11	-	-	-	-	27604483	CTT	-	27604481	7	5	228	1	0	1	0	1	0	0	0	0	12417	680	24	0	18	0	PPM1G	2	27604481	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	181042	27604481	215594892	180	14286										
PPM1G	0	genome.wustl.edu	37	chr2	27607589	27607589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catctgactcatcctcactgTcctcaaagaacttggactta	5	13	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	27607589	27607589	T	C	SNP	PPM1G	ENST00000344034	human	ensembl	69_37n	-1	known	missense	c.776	p.D259G	1.000	superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1G	HGNC	ENSG00000115241	142	0	0	92	49	34.75	-	-	-	C	27607589	T	C	27607589	3	2	228	1	0	0	0	0	1	0	0	0	12417	1667	58	5	888	5	PPM1G	2	27607589	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3108	27607589	215591784	181	14287										
SUPT7L	0	genome.wustl.edu	37	chr2	27876578	27876578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaggctccattttcacatggGccagattccaaagaggagaa	11	9	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	27876578	27876578	G	A	SNP	SUPT7L	ENST00000337768	human	ensembl	69_37n	-1	known	missense	c.1019	p.A340V	1.000	NULL	pfam_BTP,smart_BTP	-	no_errors	SUPT7L	HGNC	ENSG00000119760	401	0	0	221	169	43.33	-	-	-	A	27876578	G	A	27876578	3	1	228	1	0	0	0	0	1	0	0	0	15492	1203	42	4	229	4	SUPT7L	2	27876578	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	268989	27876578	215322795	182	14288										
PLB1	0	genome.wustl.edu	37	chr2	28763238	28763238	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttttaacctgcagccctgCaccagagccctgtaattgct	8	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	28763238	28763238	C	A	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	missense	c.737	p.A246E	0.000	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	31	0	0	24	3	11.11	-	-	-	A	28763238	C	A	28763238	3	1	228	1	0	0	0	0	1	0	0	0	12098	710	25	4	783	4	PLB1	2	28763238	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	886660	28763238	214436135	183	14289										
CLIP4	0	genome.wustl.edu	37	chr2	29404500	29404500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcaggtggcattgaagggaGcgtgaagctgcacgaggggt	19	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	29404500	29404500	G	A	SNP	CLIP4	ENST00000402240	human	ensembl	69_37n	1	known	missense	c.1865	p.S622N	0.002	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295	109	0	0	56	62	52.54	-	-	-	A	29404500	G	A	29404500	3	1	228	1	0	0	0	0	1	0	0	0	3565	971	34	4	1917	4	CLIP4	2	29404500	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	641262	29404500	213794873	184	14290										
BIRC6	0	genome.wustl.edu	37	chr2	32631603	32631603	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gattcagacagtgaagagcaTtccagatcagattctgtgac	10	8	3	6			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	32631603	32631603	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	silent	c.1455	p.H485	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	129	0	0	60	37	37.76	-	-	-	C	32631603	T	C	32631603	2	2	228	1	0	0	0	0	0	0	0	1	1443	1490	52	5		5	BIRC6	2	32631603	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3227103	32631603	210567770	185	14291										
TTC27	0	genome.wustl.edu	37	chr2	33036158	33036158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagtggagatgttgcaactgGcctcaaaggaaagctgcagg	14	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	33036158	33036158	G	A	SNP	TTC27	ENST00000317907	human	ensembl	69_37n	1	known	missense	c.2066	p.G689D	0.161	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699	213	0	0	137	82	37.44	-	-	-	A	33036158	G	A	33036158	3	1	228	1	0	0	0	0	1	0	0	0	16792	1203	42	4	2132	4	TTC27	2	33036158	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	404555	33036158	210163215	186	14292										
ATL2	0	genome.wustl.edu	37	chr2	38525438	38525438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatagagtttaggccaatgaAgccagtcagtcctgagatta	10	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	38525438	38525438	A	C	SNP	ATL2	ENST00000378954	human	ensembl	69_37n	-1	known	missense	c.1480	p.F494V	1.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787	348	0	0	153	103	40.23	-	-	-	C	38525438	A	C	38525438	3	2	228	1	0	0	0	0	1	0	0	0	1111	72	3	5	391	5	ATL2	2	38525438	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5489280	38525438	204673935	187	14293										
ATL2	0	genome.wustl.edu	37	chr2	38537462	38537462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aattcccacctttcaatctcCcatcaaaactaggattagtt	3	12	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	38537462	38537462	C	T	SNP	ATL2	ENST00000378954	human	ensembl	69_37n	-1	known	missense	c.932	p.G311E	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787	244	0	0	96	86	47.25	-	-	-	T	38537462	C	T	38537462	3	4	228	1	0	0	0	0	1	0	0	0	1111	623	22	4	955	4	ATL2	2	38537462	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	12024	38537462	204661911	188	14294										
SOS1	0	genome.wustl.edu	37	chr2	39237796	39237796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttaggagagttaatttctttGtcttcttttgtccacacact	6	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	39237796	39237796	G	A	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	silent	c.2439	p.D813	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	161	0	0	100	13	11.5	-	-	-	A	39237796	G	A	39237796	2	1	228	1	0	0	0	0	0	0	0	1	15025	1368	48	4		4	SOS1	2	39237796	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	700334	39237796	203961577	189	14295										
EML4	0	genome.wustl.edu	37	chr2	42530465	42530465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcattttcagggtcatacagAtgagctttggggtcttgcca	11	8	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	42530465	42530465	A	G	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	missense	c.1778	p.D593G	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	254	0	0	141	85	37.61	-	-	-	G	42530465	A	G	42530465	3	3	228	1	0	0	0	0	1	0	0	0	5136	333	12	5	1840	5	EML4	2	42530465	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3292669	42530465	200668908	190	14296										
PRKCE	0	genome.wustl.edu	37	chr2	45879258	45879260	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatggtagtgttcaatggcCttcttaagatcaaaatctgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	45879258	45879260	CTT	-	DEL	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	in_frame_del	c.19_21	p.L8in_frame_del	1.000:1.000:1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	26	0	0	8	6	42.86	-	-	-	-	45879260	CTT	-	45879258	7	5	228	1	0	1	0	1	0	0	0	0	12592	681	24	0	21	0	PRKCE	2	45879258	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	3348793	45879258	197320115	191	14297										
PRKCE	0	genome.wustl.edu	37	chr2	46234614	46234614	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccctagaaataaaagaactTgagaacaacattcggaaagc	8	8	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	46234614	46234614	T	C	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	silent	c.1077	p.L359	1.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	82	0	0	40	37	47.44	-	-	-	C	46234614	T	C	46234614	2	2	228	1	0	0	0	0	0	0	0	1	12592	1799	63	5		5	PRKCE	2	46234614	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	355356	46234614	196964759	192	14298										
ATP6V1E2	0	genome.wustl.edu	37	chr2	46739379	46739379	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccacatgtttctgggaaaTtgtcatgtactcggggatgg	12	8	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	46739379	46739379	T	C	SNP	ATP6V1E2	ENST00000306448	human	ensembl	69_37n	-1	known	missense	c.472	p.I158V	0.000	pfam_ATPase_V1/A1-cplx_esu	pfam_ATPase_V1/A1-cplx_esu	-	no_errors	ATP6V1E2	HGNC	ENSG00000250565	179	1	0.56	110	72	39.56	-	-	-	C	46739379	T	C	46739379	3	2	228	1	0	0	0	0	1	0	0	0	1188	1493	52	5	212	5	ATP6V1E2	2	46739379	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	504765	46739379	196459994	193	14299										
TTC7A	0	genome.wustl.edu	37	chr2	47278908	47278908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccggcgggcttcgtccatcGccgcctcccggctggaggag	15	17	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	47278908	47278908	G	A	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	1	known	missense	c.2041	p.A681T	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	45	0	0	32	24	42.11	-	-	-	A	47278908	G	A	47278908	3	1	228	1	0	0	0	0	1	0	0	0	16809	1087	38	1	2111	1	TTC7A	2	47278908	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	539529	47278908	195920465	194	14300										
TSPYL6	0	genome.wustl.edu	37	chr2	54482933	54482933	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccacctaggccgtgcgtcTcttcacccggaaagccattt	8	17	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	54482933	54482933	T	C	SNP	TSPYL6	ENST00000317802	human	ensembl	69_37n	-1	known	missense	c.356	p.E119G	0.001	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021	65	0	0	60	49	44.95	-	-	-	C	54482933	T	C	54482933	3	2	228	1	0	0	0	0	1	0	0	0	16759	1551	54	5	880	5	TSPYL6	2	54482933	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7204025	54482933	188716440	195	14301										
CCDC88A	0	genome.wustl.edu	37	chr2	55546075	55546075	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atctgagcctgcaaattattGttctgtgtctcaagttgctt	8	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	55546075	55546075	G	A	SNP	CCDC88A	ENST00000456975	human	ensembl	69_37n	-1	novel	nonsense	c.169	p.Q57*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	CCDC88A	HGNC	ENSG00000115355	170	0	0	61	55	47.41	-	-	-	A	55546075	G	A	55546075	4	1	228	1	0	0	0	0	0	1	0	0	2890	1368	48	4	2443	4	CCDC88A	2	55546075	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1063142	55546075	187653298	196	14302										
CCDC88A	0	genome.wustl.edu	37	chr2	55570919	55570919	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcaatcttttttctatccaTatctcgttccttttttattg	2	9	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	55570919	55570919	T	C	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.1198	p.M400V	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	134	0	0	64	37	36.63	-	-	-	C	55570919	T	C	55570919	3	2	228	1	0	0	0	0	1	0	0	0	2890	1406	49	5	4501	5	CCDC88A	2	55570919	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	24844	55570919	187628454	197	14303										
SMEK2	0	genome.wustl.edu	37	chr2	55844403	55844403	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagggtatagaccttcactcGccgccgcgtatccgacatgg	11	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	55844403	55844403	G	A	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	nonsense	c.19	p.R7*	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	37	0	0	32	26	44.07	-	-	-	A	55844403	G	A	55844403	4	1	228	1	0	0	0	0	0	1	0	0	14883	1095	38	1	2598	1	SMEK2	2	55844403	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	273484	55844403	187354970	198	14304										
ARHGAP25	0	genome.wustl.edu	37	chr2	68962497	68962497	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctacttaaaaatggatctcgCagcaaatctgagtttgaggg	10	7	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	68962497	68962497	C	T	SNP	ARHGAP25	ENST00000485700	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	101	0	0	50	40	43.48	-	-	-	T	68962497	C	T	68962497	1	4	228	0	1	0	0	0	0	0	0	0	876	725	25	4		4	ARHGAP25	2	68962497	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	13118094	68962497	174236876	199	14305										
ANKRD53	0	genome.wustl.edu	37	chr2	71211941	71211941	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caatgcattccacagcccacGgagatgcccaagcccatcta	7	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	71211941	71211941	G	A	SNP	ANKRD53	ENST00000360589	human	ensembl	69_37n	1	putative	silent	c.1104	p.T368	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD53	HGNC	ENSG00000144031	10	0	0	11	8	42.11	-	-	-	A	71211941	G	A	71211941	2	1	228	1	0	0	0	0	0	0	0	1	678	1103	39	1		1	ANKRD53	2	71211941	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2249444	71211941	171987432	200	14306										
CCT7	0	genome.wustl.edu	37	chr2	73474938	73474938	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaagaagactttctcttacGctgggtttgaaatgcaaccc	8	10	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	73474938	73474938	G	C	SNP	CCT7	ENST00000258091	human	ensembl	69_37n	1	known	missense	c.667	p.A223P	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624	60	0	0	32	29	47.54	-	-	-	C	73474938	G	C	73474938	3	2	228	1	0	0	0	0	1	0	0	0	2988	1087	38	3	693	3	CCT7	2	73474938	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2262997	73474938	169724435	201	14307										
C2orf78	0	genome.wustl.edu	37	chr2	74040626	74040626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatttccaaaatacgtctttAcctggaactgcaaattctcg	5	10	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	74040626	74040626	A	G	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	silent	c.120	p.L40	0.101	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	81	0	0	37	33	47.14	-	-	-	G	74040626	A	G	74040626	2	3	228	1	0	0	0	0	0	0	0	1	2215	388	14	5		5	C2orf78	2	74040626	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	565688	74040626	169158747	202	14308										
HK2	0	genome.wustl.edu	37	chr2	75101450	75101450	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacatcgacatggtggaagGcgatgaggggcggatgtgta	17	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	75101450	75101450	G	C	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	missense	c.749	p.G250A	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	51	0	0	24	16	40	-	-	-	C	75101450	G	C	75101450	3	2	228	1	0	0	0	0	1	0	0	0	7242	1203	42	4	775	4	HK2	2	75101450	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1060824	75101450	168097923	203	14309										
LRRTM1	0	genome.wustl.edu	37	chr2	80529542	80529542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtttctgcttttgcttcctgCgctgcgtgacaaagcactgt	10	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	80529542	80529542	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	missense	c.1403	p.R468H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	50	0	0	30	13	29.55	-	-	-	T	80529542	C	T	80529542	3	4	228	1	0	0	0	0	1	0	0	0	9105	768	27	1	169	1	LRRTM1	2	80529542	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5428092	80529542	162669831	204	14310										
POLR1A	0	genome.wustl.edu	37	chr2	86255901	86255902	+	RNA	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccttctgcctgcgtatctINSccccctggccgctctctctc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	86255901	86255902	-	C	INS	POLR1A	ENST00000471427	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	POLR1A	HGNC	ENSG00000068654	25	0	0	16	9	36	-	-	-	C	86255902	-	C	86255901	6	5	228	0	1	1	1	0	0	0	0	0	12283	1566	54	0		0	POLR1A	2	86255901	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	5726359	86255901	156943472	205	14311										
SMYD1	0	genome.wustl.edu	37	chr2	88390630	88390630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggtgaaccatgactgttggCccaactgtactgtcatattt	9	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	88390630	88390630	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	missense	c.628	p.P210S	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	210	0	0	110	92	45.32	-	-	-	T	88390630	C	T	88390630	3	4	228	1	0	0	0	0	1	0	0	0	14910	739	26	4	642	4	SMYD1	2	88390630	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2134729	88390630	154808743	206	14312										
UNC50	0	genome.wustl.edu	37	chr2	99232795	99232795	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattttgcattttatccagcTttttttcatcaaccgtaagt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	99232795	99232795	T	-	DEL	UNC50	ENST00000409347	human	ensembl	69_37n	1	known	frame_shift_del	c.578	p.F195fs	0.997	pfam_UNC-50	pfam_UNC-50	-	no_errors	UNC50	HGNC	ENSG00000115446	285	0	0	167	109	38.79	-	-	-	-	99232795	T	-	99232795	7	5	228	1	0	1	0	1	0	0	0	0	17087	1609	56	0	537	0	UNC50	2	99232795	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	10842165	99232795	143966578	207	14313										
LIPT1	0	genome.wustl.edu	37	chr2	99779272	99779272	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagtttagtataaatacttcCtttcatgtgttatatgaaca	5	5	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	99779272	99779272	C	A	SNP	LIPT1	ENST00000340066	human	ensembl	69_37n	1	known	silent	c.852	p.S284	0.054	tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182	181	0	0	133	91	40.62	-	-	-	A	99779272	C	A	99779272	2	1	228	1	0	0	0	0	0	0	0	1	8885	668	24	4		4	LIPT1	2	99779272	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	546477	99779272	143420101	208	14314										
EIF5B	0	genome.wustl.edu	37	chr2	100009493	100009493	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taaagattcttggaaaagacCtggagaaaacattggctggt	11	5	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	100009493	100009493	C	T	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	silent	c.2812	p.L938	1.000	pfam_Transl_elong_EFTu/EF1A_2	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	187	1	0.53	90	62	40.79	-	-	-	T	100009493	C	T	100009493	2	4	228	1	0	0	0	0	0	0	0	1	5081	680	24	4		4	EIF5B	2	100009493	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	230221	100009493	143189880	209	14315										
REV1	0	genome.wustl.edu	37	chr2	100019368	100019368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttaccaggggtttctctgcaGgaggtccttcatgttttaga	11	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	100019368	100019368	G	T	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	missense	c.3368	p.P1123H	0.001	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	243	0	0	102	90	46.63	-	-	-	T	100019368	G	T	100019368	3	4	228	1	0	0	0	0	1	0	0	0	13322	1000	35	4	403	4	REV1	2	100019368	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	9875	100019368	143180005	210	14316										
SLC9A2	0	genome.wustl.edu	37	chr2	103236535	103236535	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtttacgctggattacccCcacgtgcagatccccttcga	9	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	103236535	103236535	C	T	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	silent	c.228	p.P76	0.996	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	18	0	0	15	4	21.05	-	-	-	T	103236535	C	T	103236535	2	4	228	1	0	0	0	0	0	0	0	1	14801	610	22	4		4	SLC9A2	2	103236535	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3217167	103236535	139962838	211	14317										
TGFBRAP1	0	genome.wustl.edu	37	chr2	105885923	105885923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggcggttcagcaggtccaCggcagccacggccagctcgt	15	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	105885923	105885923	C	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	69_37n	-1	known	missense	c.2212	p.V738M	1.000	pfam_VPS39/TGF_beta_rcpt-assoc_2	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	14	0	0	18	9	33.33	-	-	-	T	105885923	C	T	105885923	3	4	228	1	0	0	0	0	1	0	0	0	15919	536	19	1	378	1	TGFBRAP1	2	105885923	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2649388	105885923	137313450	212	14318										
UXS1	0	genome.wustl.edu	37	chr2	106761814	106761814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgggagcccacgaaccctgCgcctcctgttatctgcatcc	9	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	106761814	106761814	C	T	SNP	UXS1	ENST00000283148	human	ensembl	69_37n	-1	known	missense	c.304	p.A102T	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_3Beta_OHSteriod_DH/Estase	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	53	0	0	30	29	49.15	-	-	-	T	106761814	C	T	106761814	3	4	228	1	0	0	0	0	1	0	0	0	17206	768	27	1	1013	1	UXS1	2	106761814	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	875891	106761814	136437559	213	14319										
RGPD3	0	genome.wustl.edu	37	chr2	107057796	107057796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatttccagcagattttgtCcagcttcaccttttattaat	4	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	107057796	107057796	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.1019	p.G340E	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	103	0	0	44	32	42.11	-	-	-	T	107057796	C	T	107057796	3	4	228	1	0	0	0	0	1	0	0	0	13370	855	30	2	4321	2	RGPD3	2	107057796	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	295982	107057796	136141577	214	14320										
SULT1C4	0	genome.wustl.edu	37	chr2	108999931	108999931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggaagccaaagacaaacacCgtattctctatctcttctat	6	11	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	108999931	108999931	C	T	SNP	SULT1C4	ENST00000272452	human	ensembl	69_37n	1	known	missense	c.580	p.R194C	0.016	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1C4	HGNC	ENSG00000198075	105	0	0	66	50	42.74	-	-	-	T	108999931	C	T	108999931	3	4	228	1	0	0	0	0	1	0	0	0	15470	652	23	1	598	1	SULT1C4	2	108999931	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1942135	108999931	134199442	215	14321										
NPHP1	0	genome.wustl.edu	37	chr2	110919222	110919222	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcagatctctgaaggccagTtgtgaaggcatgagctctgg	13	8	3	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	110919222	110919222	T	C	SNP	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	silent	c.1080	p.Q360	0.979	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	143	0	0	63	48	43.24	-	-	-	C	110919222	T	C	110919222	2	2	228	1	0	0	0	0	0	0	0	1	10651	1722	60	5		5	NPHP1	2	110919222	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1919291	110919222	132280151	216	14322										
TTL	0	genome.wustl.edu	37	chr2	113286608	113286608	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acttttgaaaacaactttggTacacaaaggcagctttgtga	8	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	113286608	113286608	T	C	SNP	TTL	ENST00000460450	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TTL	HGNC	ENSG00000114999	14	0	0	8	4	33.33	-	-	-	C	113286608	T	C	113286608	1	2	228	0	1	0	0	0	0	0	0	0	16818	1653	57	5		5	TTL	2	113286608	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2367386	113286608	129912765	217	14323										
DPP10	0	genome.wustl.edu	37	chr2	116101463	116101463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggaaagactttgtgcttcaCgatccagaggctcggtggat	13	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	116101463	116101463	C	T	SNP	DPP10	ENST00000429914	human	ensembl	69_37n	1	known	missense	c.110	p.T37M	0.999	NULL	NULL	-	no_errors	DPP10	HGNC	ENSG00000175497	122	0	0	83	47	36.15	-	-	-	T	116101463	C	T	116101463	3	4	228	1	0	0	0	0	1	0	0	0	4762	535	19	1	427	1	DPP10	2	116101463	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2814855	116101463	127097910	218	14324										
DPP10	0	genome.wustl.edu	37	chr2	116599870	116599870	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcaaattcttcagtgattgTttgaaggaagaaatatctgt	8	5	4	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	116599870	116599870	T	A	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	nonsense	c.2352	p.C784*	0.883	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	127	0	0	58	49	45.79	-	-	-	A	116599870	T	A	116599870	4	1	228	1	0	0	0	0	0	1	0	0	4762	1731	60	5	2613	5	DPP10	2	116599870	Nonsense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	498407	116599870	126599503	219	14325										
CCDC93	0	genome.wustl.edu	37	chr2	118703151	118703152	+	Frame_Shift_Del	DEL	GA	GA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taccaggcggctctccactgGagagggtctgaaacaatgaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	118703151	118703152	GA	-	DEL	CCDC93	ENST00000376300	human	ensembl	69_37n	-1	known	frame_shift_del	c.1304_1303	p.S435fs	0.014:0.001	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633	45	0	0	29	26	47.27	-	-	-	-	118703152	GA	-	118703151	7	5	228	1	0	1	0	1	0	0	0	0	2899	1174	41	0	623	0	CCDC93	2	118703151	Frame_Shift_Del	DEL	GA	TCGA-A8-A09Z-01A-11W-A019-09	2103281	118703151	124496222	220	14326										
INSIG2	0	genome.wustl.edu	37	chr2	118865892	118865892	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcgcagaaaaatctcatcaGgaatgaagaaggcaaaaaat	8	6	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	118865892	118865892	G	A	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	silent	c.672	p.Q224	1.000	NULL	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	91	0	0	36	22	37.93	-	-	-	A	118865892	G	A	118865892	2	1	228	1	0	0	0	0	0	0	0	1	7820	991	35	4		4	INSIG2	2	118865892	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	162741	118865892	124333481	221	14327										
TMEM177	0	genome.wustl.edu	37	chr2	120438505	120438505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttggtgggttcctgtgcaGgcctgtttggagttccaatc	13	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	120438505	120438505	G	T	SNP	TMEM177	ENST00000272521	human	ensembl	69_37n	1	known	missense	c.76	p.G26C	0.994	NULL	NULL	-	no_errors	TMEM177	HGNC	ENSG00000144120	176	0	0	78	69	46.31	-	-	-	T	120438505	G	T	120438505	3	4	228	1	0	0	0	0	1	0	0	0	16189	1000	35	4	78	4	TMEM177	2	120438505	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1572613	120438505	122760868	222	14328										
EPB41L5	0	genome.wustl.edu	37	chr2	120918261	120918261	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattgcctatcttttttattAaaaaaccattttaactggag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	120918261	120918261	A	-	DEL	EPB41L5	ENST00000488691	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	EPB41L5	HGNC	ENSG00000115109	42	0	0	22	14	36.84	-	-	-	-	120918261	A	-	120918261	6	5	228	0	1	1	0	1	0	0	0	0	5194	377	13	0		0	EPB41L5	2	120918261	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	479756	120918261	122281112	223	14329										
GLI2	0	genome.wustl.edu	37	chr2	121740302	121740302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccttctagttcgagggctGctcgaaggcctactcccgcc	10	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	121740302	121740302	G	A	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.1529	p.C510Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	29	0	0	22	12	35.29	-	-	-	A	121740302	G	A	121740302	3	1	228	1	0	0	0	0	1	0	0	0	6490	1319	46	4	1567	4	GLI2	2	121740302	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	822041	121740302	121459071	224	14330										
CNTNAP5	0	genome.wustl.edu	37	chr2	125504942	125504942	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attcagcacttttgcaattgCgacgctgacaaggatgaatg	10	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	125504942	125504942	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	silent	c.2211	p.C737	0.999	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	427	2	0.47	262	205	43.8	-	-	-	T	125504942	C	T	125504942	2	4	228	1	0	0	0	0	0	0	0	1	3680	776	27	1		1	CNTNAP5	2	125504942	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3764640	125504942	117694431	225	14331										
CYP27C1	0	genome.wustl.edu	37	chr2	127950746	127950746	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaccccatgaccaaaggggAtggatccaaaattgtcaact	9	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	127950746	127950746	A	G	SNP	CYP27C1	ENST00000335247	human	ensembl	69_37n	-1	known	missense	c.926	p.I309T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27C1	HGNC	ENSG00000186684	44	0	0	29	21	42	-	-	-	G	127950746	A	G	127950746	3	3	228	1	0	0	0	0	1	0	0	0	4191	333	12	5	200	5	CYP27C1	2	127950746	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2445804	127950746	115248627	226	14332										
MYO7B	0	genome.wustl.edu	37	chr2	128339974	128339974	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccaaaaatgtgcggagggcCatcggcctcctggacatatt	11	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	128339974	128339974	C	A	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	silent	c.1296	p.A432	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	18	0	0	13	11	45.83	-	-	-	A	128339974	C	A	128339974	2	1	228	1	0	0	0	0	0	0	0	1	10155	581	21	4		4	MYO7B	2	128339974	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	389228	128339974	114859399	227	14333										
TUBA3E	0	genome.wustl.edu	37	chr2	130949467	130949469	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgcccacctcttcacaatcCttctctagagctgccaggtc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	130949467	130949469	CTT	-	DEL	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	in_frame_del	c.1290_1288	p.K430in_frame_del	1.000:1.000:1.000	superfamily_Tub_FtsZ_C,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	118	0	0	65	64	48.12	-	-	-	-	130949469	CTT	-	130949467	7	5	228	1	0	1	0	1	0	0	0	0	16845	680	24	0	66	0	TUBA3E	2	130949467	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	2609493	130949467	112249906	228	14334										
TUBA3D	0	genome.wustl.edu	37	chr2	132238049	132238049	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccagaccaacctagtgccGtacccccgcatccacttccc	5	20	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	132238049	132238049	G	A	SNP	TUBA3D	ENST00000321253	human	ensembl	69_37n	1	known	silent	c.783	p.P261	0.964	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	145	0	0	103	48	31.79	-	-	-	A	132238049	G	A	132238049	2	1	228	1	0	0	0	0	0	0	0	1	16844	1132	40	1		1	TUBA3D	2	132238049	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1288582	132238049	110961324	229	14335										
NCKAP5	0	genome.wustl.edu	37	chr2	133540646	133540646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttctcatggatctattatcTaccccatcccttccatcact	2	16	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	133540646	133540646	T	C	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.3738	p.V1246	0.001	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	157	0	0	91	75	45.18	-	-	-	C	133540646	T	C	133540646	2	2	228	1	0	0	0	0	0	0	0	1	10295	1509	53	5		5	NCKAP5	2	133540646	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1302597	133540646	109658727	230	14336										
CXCR4	0	genome.wustl.edu	37	chr2	136873125	136873125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgatgaaggccaggatgaGgacactgctgtagaggttga	15	6	0	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	136873125	136873125	G	A	SNP	CXCR4	ENST00000409817	human	ensembl	69_37n	-1	known	missense	c.385	p.L129F	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_Chemokine_CXCR4_N,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CXCR4	HGNC	ENSG00000121966	158	0	0	70	52	42.62	-	-	-	A	136873125	G	A	136873125	3	1	228	1	0	0	0	0	1	0	0	0	4124	1000	35	4	689	4	CXCR4	2	136873125	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3332479	136873125	106326248	231	14337										
LRP1B	0	genome.wustl.edu	37	chr2	141093197	141093197	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacctaccctcttttaggatTtactgcaatagcatagggtt	7	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	141093197	141093197	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12103	p.N4035D	0.963	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	174	0	0	86	69	44.23	-	-	-	C	141093197	T	C	141093197	3	2	228	1	0	0	0	0	1	0	0	0	9021	1841	64	5	1752	5	LRP1B	2	141093197	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4220072	141093197	102106176	232	14338										
LRP1B	0	genome.wustl.edu	37	chr2	141130647	141130647	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcacatttccattttgctggTatacactgaccattggaaca	6	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	141130647	141130647	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.10698	p.I3566M	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	257	0	0	101	71	41.28	-	-	-	C	141130647	T	C	141130647	3	2	228	1	0	0	0	0	1	0	0	0	9021	1628	57	5	3193	5	LRP1B	2	141130647	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	37450	141130647	102068726	233	14339										
KIF5C	0	genome.wustl.edu	37	chr2	149803485	149803485	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaagagaatgtagagactgAaaaaaaactcagtgggaaac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	149803485	149803485	A	-	DEL	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	frame_shift_del	c.662	p.K223fs	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	67	0	0	62	33	34.02	-	-	-	-	149803485	A	-	149803485	7	5	228	1	0	1	0	1	0	0	0	0	8359	246	9	0	614	0	KIF5C	2	149803485	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	8672838	149803485	93395888	234	14340										
NEB	0	genome.wustl.edu	37	chr2	152402429	152402429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatgtgtcttcagttcttgCacttttctgtattctggagt	9	7	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	152402429	152402429	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.20550	p.V6850	0.935	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	21	0	0	18	7	28	-	-	-	T	152402429	C	T	152402429	2	4	228	1	0	0	0	0	0	0	0	1	10374	697	25	4		4	NEB	2	152402429	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2598944	152402429	90796944	235	14341										
SCN3A	0	genome.wustl.edu	37	chr2	166003403	166003403	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaggtgctctctctgtcttCttttcttccttcggttcctc	6	14	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	166003403	166003403	C	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.1517	p.R506I	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	430	0	0	262	152	36.71	-	-	-	A	166003403	C	A	166003403	3	1	228	1	0	0	0	0	1	0	0	0	14006	913	32	2	4553	2	SCN3A	2	166003403	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	13600974	166003403	77195970	236	14342										
SCN3A	0	genome.wustl.edu	37	chr2	166020198	166020198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacgctgagacattgcccagGtccacaaactctgtcacata	7	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	166020198	166020198	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	silent	c.624	p.D208	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	94	0	0	44	26	37.14	-	-	-	A	166020198	G	A	166020198	2	1	228	1	0	0	0	0	0	0	0	1	14006	1252	44	4		4	SCN3A	2	166020198	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	16795	166020198	77179175	237	14343										
SCN2A	0	genome.wustl.edu	37	chr2	166165200	166165200	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctttacaggaatttatacTtttgaatcacttattaaaat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	166165200	166165200	T	-	DEL	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	frame_shift_del	c.501	p.F168fs	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	244	0	0	103	59	35.54	-	-	-	-	166165200	T	-	166165200	7	5	228	1	0	1	0	1	0	0	0	0	14004	1596	56	0	515	0	SCN2A	2	166165200	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	145002	166165200	77034173	238	14344										
SCN7A	0	genome.wustl.edu	37	chr2	167327218	167327218	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagtatcttataataacccTgtggaattaaattagagtta	7	4	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	167327218	167327218	T	C	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	splice_site	c.573-2	e5-2	1.000	-	-	-	no_errors	SCN7A	HGNC	ENSG00000136546	65	0	0	35	28	44.44	-	-	-	C	167327218	T	C	167327218	5	2	228	1	0	0	0	0	0	0	1	0	14011	1594	55	5	4557	5	SCN7A	2	167327218	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1162018	167327218	75872155	239	14345										
SLC25A12	0	genome.wustl.edu	37	chr2	172650214	172650214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccgtggtgatctctccagCtacttgcagacgaatcttca	8	13	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	172650214	172650214	C	T	SNP	SLC25A12	ENST00000422440	human	ensembl	69_37n	-1	known	missense	c.1369	p.A457T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840	190	0	0	119	80	40.2	-	-	-	T	172650214	C	T	172650214	3	4	228	1	0	0	0	0	1	0	0	0	14563	797	28	4	687	4	SLC25A12	2	172650214	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5322996	172650214	70549159	240	14346										
DLX2	0	genome.wustl.edu	37	chr2	172966131	172966131	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagcattgtcctaaacccgcCtgcttcccagccatctcagg	7	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	172966131	172966131	C	A	SNP	DLX2	ENST00000466293	human	ensembl	69_37n	-1	putative	missense	c.644	p.R215M	0.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DLX2	HGNC	ENSG00000115844	41	0	0	9	11	55	-	-	-	A	172966131	C	A	172966131	3	1	228	1	0	0	0	0	1	0	0	0	4607	696	24	4		4	DLX2	2	172966131	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	315917	172966131	70233242	241	14347										
CERKL	0	genome.wustl.edu	37	chr2	182413440	182413440	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgccttaacaacagcaaaaTctctccgttggttaggggac	10	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	182413440	182413440	T	A	SNP	CERKL	ENST00000339098	human	ensembl	69_37n	-1	known	missense	c.1118	p.D373V	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452	246	0	0	100	47	31.97	-	-	-	A	182413440	T	A	182413440	3	1	228	1	0	0	0	0	1	0	0	0	3297	1435	50	5	586	5	CERKL	2	182413440	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	9447309	182413440	60785933	242	14348										
OSGEPL1	0	genome.wustl.edu	37	chr2	190618903	190618903	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcattattattttatcagTaacgtgttgaagtccagtaa	6	5	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	190618903	190618903	T	C	SNP	OSGEPL1	ENST00000264151	human	ensembl	69_37n	-1	known	missense	c.778	p.T260A	0.000	pfam_Peptidase_M22,tigrfam_Peptidase_M22_subgr	pfam_Peptidase_M22,prints_Peptidase_M22_subgr,tigrfam_Peptidase_M22_subgr	-	no_errors	OSGEPL1	HGNC	ENSG00000128694	89	0	0	49	43	46.74	-	-	-	C	190618903	T	C	190618903	3	2	228	1	0	0	0	0	1	0	0	0	11361	1638	57	5	486	5	OSGEPL1	2	190618903	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	8205463	190618903	52580470	243	14349										
CCDC150	0	genome.wustl.edu	37	chr2	197584490	197584490	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttatgtagcttcctttacAaaaaaaaaaattgcaaaatg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	197584490	197584490	A	-	DEL	CCDC150	ENST00000461825	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395	32	0	0	11	8	34.78	-	-	-	-	197584490	A	-	197584490	6	5	228	0	1	1	0	1	0	0	0	0	2810	145	5	0		0	CCDC150	2	197584490	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	6965587	197584490	45614883	244	14350										
CCDC150	0	genome.wustl.edu	37	chr2	197597463	197597463	+	RNA	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcagtacaaaactaccccTttttttgtcccttttcacat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	197597463	197597463	T	-	DEL	CCDC150	ENST00000483877	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395	78	0	0	33	12	25.53	-	-	-	-	197597463	T	-	197597463	6	5	228	0	1	1	0	1	0	0	0	0	2810	1624	56	0		0	CCDC150	2	197597463	RNA	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	12973	197597463	45601910	245	14351										
BOLL	0	genome.wustl.edu	37	chr2	198641793	198641794	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatcatacctcttgtaaaaINSttttttgtgcatcttcttgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	198641793	198641794	-	T	INS	BOLL	ENST00000321801	human	ensembl	69_37n	-1	known	frame_shift_ins	c.302_301	p.I101fs	1.000:1.000	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	BOLL	HGNC	ENSG00000152430	73	0	0	44	19	30.16	-	-	-	T	198641794	-	T	198641793	7	5	228	1	0	1	1	0	0	0	0	0	1494	101	4	0	617	0	BOLL	2	198641793	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	1044330	198641793	44557580	246	14352										
SATB2	0	genome.wustl.edu	37	chr2	200137064	200137064	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actcggtcagcagctcctcgTccttatattcagccacgtcc	7	16	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	200137064	200137064	T	A	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.2072	p.D691V	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	242	0	0	138	109	43.95	-	-	-	A	200137064	T	A	200137064	3	1	228	1	0	0	0	0	1	0	0	0	13941	1667	58	5	133	5	SATB2	2	200137064	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1495271	200137064	43062309	247	14353										
C2orf47	0	genome.wustl.edu	37	chr2	200820861	200820861	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaccaagatgatcgtcctgGgattctccaaccccatcaac	6	14	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	200820861	200820861	G	A	SNP	C2orf47	ENST00000435773	human	ensembl	69_37n	1	putative	nonsense	c.318	p.W106*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C2orf47	HGNC	ENSG00000162972	61	0	0	46	33	41.77	-	-	-	A	200820861	G	A	200820861	4	1	228	1	0	0	0	0	0	1	0	0	2189	1233	43	4	342	4	C2orf47	2	200820861	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	683797	200820861	42378512	248	14354										
SPATS2L	0	genome.wustl.edu	37	chr2	201334654	201334654	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcactttgtcagcgagcgTaaatatgacgaggagctcgg	13	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	201334654	201334654	T	A	SNP	SPATS2L	ENST00000409755	human	ensembl	69_37n	1	known	silent	c.1065	p.R355	0.994	pfam_DUF1387	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141	34	0	0	10	13	56.52	-	-	-	A	201334654	T	A	201334654	2	1	228	1	0	0	0	0	0	0	0	1	15111	1625	57	5		5	SPATS2L	2	201334654	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	513793	201334654	41864719	249	14355										
CDK15	0	genome.wustl.edu	37	chr2	202755509	202755509	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctcttttcattcctacagaGgagtctttgtttacagtttc	6	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	202755509	202755509	G	T	SNP	CDK15	ENST00000374598	human	ensembl	69_37n	1	known	missense	c.1200	p.E400D	0.460	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK15	HGNC	ENSG00000138395	121	0	0	97	48	33.1	-	-	-	T	202755509	G	T	202755509	3	4	228	1	0	0	0	0	1	0	0	0	3160	1014	35	4	1093	4	CDK15	2	202755509	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1420855	202755509	40443864	250	14356										
SUMO1	0	genome.wustl.edu	37	chr2	203096349	203096349	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acagagcgagactccgtctcAaaaaaaaaagattatcggcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	203096349	203096349	A	-	DEL	SUMO1	ENST00000409627	human	ensembl	69_37n	-1	known	frame_shift_del	c.119	p.L40fs	0.011	NULL	NULL	-	no_errors	SUMO1	HGNC	ENSG00000116030	30	0	0	20	15	41.67	-	-	-	-	203096349	A	-	203096349	7	5	228	1	0	1	0	1	0	0	0	0	15478	145	5	0		0	SUMO1	2	203096349	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	340840	203096349	40103024	251	14357										
FN1	0	genome.wustl.edu	37	chr2	216289885	216289885	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttatttccttgtgtcttcAgccactgcatccccacagag	7	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	216289885	216289885	A	G	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.968	p.L323P	1.000	pfam_Fibronectin_type1,smart_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	240	0	0	201	28	12.23	-	-	-	G	216289885	A	G	216289885	3	3	228	1	0	0	0	0	1	0	0	0	6008	188	7	5	6658	5	FN1	2	216289885	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	13193536	216289885	26909488	252	14358										
XRCC5	0	genome.wustl.edu	37	chr2	216992312	216992312	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttgtggatgcaaaaaccctAaaaaaagaagatatacaaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	216992312	216992312	A	-	DEL	XRCC5	ENST00000392132	human	ensembl	69_37n	1	known	frame_shift_del	c.852	p.E287fs	0.161	pfam_DNA_helicase_ATP-dep_Ku,superfamily_SPOC-like	pfam_Ku_N,pfam_Ku_PK_bind,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,superfamily_SPOC-like,superfamily_Ku_PK_bind,smart_VWF_A,smart_DNA_helicase_ATP-dep_Ku	-	no_errors	XRCC5	HGNC	ENSG00000079246	117	0	0	73	28	26.92	-	-	-	-	216992312	A	-	216992312	7	5	228	1	0	1	0	1	0	0	0	0	17553	349	13	0	882	0	XRCC5	2	216992312	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	702427	216992312	26207061	253	14359										
SMARCAL1	0	genome.wustl.edu	37	chr2	217315650	217315650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggaagcagtcatgctgcggCgcctcaagtccgacgtcctt	12	13	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	217315650	217315650	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.1933	p.R645C	1.000	pfam_SNF2_N	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	53	0	0	41	36	46.75	-	-	-	T	217315650	C	T	217315650	3	4	228	1	0	0	0	0	1	0	0	0	14862	768	27	1	1971	1	SMARCAL1	2	217315650	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	323338	217315650	25883723	254	14360										
TMBIM1	0	genome.wustl.edu	37	chr2	219141751	219141751	+	Nonstop_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggaagtagagcacaatgctAgtgacaatcccagtcaccag	10	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	219141751	219141751	A	T	SNP	TMBIM1	ENST00000437694	human	ensembl	69_37n	-1	known	nonstop	c.646	p.*216K	0.426	NULL	NULL	-	no_errors	TMBIM1	HGNC	ENSG00000135926	39	0	0	31	14	31.11	-	-	-	T	219141751	A	T	219141751	4	4	228	1	0	0	0	0	0	0	0	0	16076	407	15	5	236	5	TMBIM1	2	219141751	Nonstop_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1826101	219141751	24057622	255	14361										
PLCD4	0	genome.wustl.edu	37	chr2	219483416	219483416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattgtcttccatggccgccGctccaacctggacctgatgg	10	15	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	219483416	219483416	G	A	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	missense	c.296	p.R99H	0.946	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	35	0	0	23	21	47.73	-	-	-	A	219483416	G	A	219483416	3	1	228	1	0	0	0	0	1	0	0	0	12107	1087	38	1	306	1	PLCD4	2	219483416	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	341665	219483416	23715957	256	14362										
PLCD4	0	genome.wustl.edu	37	chr2	219500592	219500592	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtggatccactggtgaaagTgcagatctttggcgttcgtc	13	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	219500592	219500592	T	C	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	missense	c.1970	p.V657A	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	48	0	0	36	27	42.86	-	-	-	C	219500592	T	C	219500592	3	2	228	1	0	0	0	0	1	0	0	0	12107	1696	59	5	2020	5	PLCD4	2	219500592	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	17176	219500592	23698781	257	14363										
CCDC108	0	genome.wustl.edu	37	chr2	219900111	219900111	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttatatggcatgttaaaggTtttttttgtttgttttgttt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	219900111	219900111	T	-	DEL	CCDC108	ENST00000295729	human	ensembl	69_37n	-1	known	frame_shift_del	c.438	p.K146fs	0.001	NULL	NULL	-	no_errors	CCDC108	HGNC	ENSG00000181378	111	0	0	79	42	32.81	-	-	-	-	219900111	T	-	219900111	7	5	228	1	0	1	0	1	0	0	0	0	2768	1722	60	0	5416	0	CCDC108	2	219900111	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	399519	219900111	23299262	258	14364										
EPHA4	0	genome.wustl.edu	37	chr2	222308223	222308223	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agacacttaccaactcctatAactttttcaatcttaatgca	2	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	222308223	222308223	A	G	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	silent	c.1878	p.V626	0.968	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	162	0	0	66	51	43.59	-	-	-	G	222308223	A	G	222308223	2	3	228	1	0	0	0	0	0	0	0	1	5206	349	13	5		5	EPHA4	2	222308223	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2408112	222308223	20891150	259	14365										
PAX3	0	genome.wustl.edu	37	chr2	223086014	223086014	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggtcggcatggcagtgggAgggaaccccccgggaatgag	18	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	223086014	223086014	A	G	SNP	PAX3	ENST00000392069	human	ensembl	69_37n	-1	known	silent	c.885	p.P295	0.999	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903	391	1	0.26	172	95	35.45	-	-	-	G	223086014	A	G	223086014	2	3	228	1	0	0	0	0	0	0	0	1	11553	291	11	5		5	PAX3	2	223086014	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	777791	223086014	20113359	260	14366										
CUL3	0	genome.wustl.edu	37	chr2	225379404	225379404	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtagatgatccctaatacacCcataacgtacaacttgatct	5	11	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	225379404	225379404	C	T	SNP	CUL3	ENST00000436172	human	ensembl	69_37n	-1	novel	nonsense	c.525	p.W175*	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	-	no_start_codon:pseudogene:no_stop_codon	CUL3	HGNC	ENSG00000036257	141	0	0	82	55	40.15	-	-	-	T	225379404	C	T	225379404	4	4	228	1	0	0	0	0	0	1	0	0	4087	623	22	4	1894	4	CUL3	2	225379404	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2293390	225379404	17819969	261	14367										
DOCK10	0	genome.wustl.edu	37	chr2	225738847	225738848	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactcaggttccaagagatcINSttttttttgaagtttcaagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	225738847	225738848	-	T	INS	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1123_1122	p.D374fs	1.000:1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	38	0	0	36	16	30.77	-	-	-	T	225738848	-	T	225738847	7	5	228	1	0	1	1	0	0	0	0	0	4720	913	32	0	5621	0	DOCK10	2	225738847	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	359443	225738847	17460526	262	14368										
COL4A4	0	genome.wustl.edu	37	chr2	227942676	227942676	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggaactcctgggtggcctcGctctcctggtggaccaggaa	14	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	227942676	227942676	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	nonsense	c.1921	p.R641*	0.330	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	61	0	0	44	36	45	-	-	-	A	227942676	G	A	227942676	4	1	228	1	0	0	0	0	0	1	0	0	3723	1095	38	1	3247	1	COL4A4	2	227942676	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2203829	227942676	15256697	263	14369										
CCL20	0	genome.wustl.edu	37	chr2	228680188	228680188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcagcaagcaactttgactGctgtcttggatacacagacc	9	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	228680188	228680188	G	A	SNP	CCL20	ENST00000358813	human	ensembl	69_37n	1	known	missense	c.95	p.C32Y	1.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8	-	no_errors	CCL20	HGNC	ENSG00000115009	151	0	0	88	73	45.34	-	-	-	A	228680188	G	A	228680188	3	1	228	1	0	0	0	0	1	0	0	0	2919	1319	46	4	101	4	CCL20	2	228680188	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	737512	228680188	14519185	264	14370										
SPHKAP	0	genome.wustl.edu	37	chr2	228855894	228855894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcccgtaggcggtccagatGcaggtgctgagaacagacac	13	11	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	228855894	228855894	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4781	p.A1594E	0.018	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	156	0	0	64	61	48.8	-	-	-	T	228855894	G	T	228855894	3	4	228	1	0	0	0	0	1	0	0	0	15139	1319	46	4	329	4	SPHKAP	2	228855894	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	175706	228855894	14343479	265	14371										
DNER	0	genome.wustl.edu	37	chr2	230272000	230272000	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcaggccgtcgctgtcacaGgtggctccgttcagacagct	12	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	230272000	230272000	G	T	SNP	DNER	ENST00000341772	human	ensembl	69_37n	-1	known	silent	c.1671	p.T557	0.956	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957	391	0	0	209	170	44.85	-	-	-	T	230272000	G	T	230272000	2	4	228	1	0	0	0	0	0	0	0	1	4702	987	35	4		4	DNER	2	230272000	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1416106	230272000	12927373	266	14372										
SLC16A14	0	genome.wustl.edu	37	chr2	230911325	230911325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcagcacagtcattaggaAcgtaccgaatccggtccccg	10	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	230911325	230911325	A	G	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	missense	c.517	p.F173L	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	119	0	0	106	54	33.54	-	-	-	G	230911325	A	G	230911325	3	3	228	1	0	0	0	0	1	0	0	0	14496	43	2	5	1023	5	SLC16A14	2	230911325	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	639325	230911325	12288048	267	14373										
GPR55	0	genome.wustl.edu	37	chr2	231775234	231775234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggatgcttccggtccacacCaggacccagatggtgcagca	13	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	231775234	231775234	C	T	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	77	0	0	55	53	49.07	-	-	-	T	231775234	C	T	231775234	2	4	228	1	0	0	0	0	0	0	0	1	6749	581	21	4		4	GPR55	2	231775234	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	863909	231775234	11424139	268	14374										
PSMD1	0	genome.wustl.edu	37	chr2	232029932	232029932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtttctactgctgtattaTctataactgccaaggctaaa	7	8	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	232029932	232029932	T	C	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.2500	p.S834P	1.000	pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	102	0	0	62	32	34.04	-	-	-	C	232029932	T	C	232029932	3	2	228	1	0	0	0	0	1	0	0	0	12772	1435	50	5	2586	5	PSMD1	2	232029932	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	254698	232029932	11169441	269	14375										
NEU2	0	genome.wustl.edu	37	chr2	233899281	233899281	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcccaggacaccctggagtgCcaggtggccgaagtcgagac	15	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	233899281	233899281	C	T	SNP	NEU2	ENST00000233840	human	ensembl	69_37n	1	known	silent	c.657	p.C219	1.000	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU2	HGNC	ENSG00000115488	26	0	0	35	24	40.68	-	-	-	T	233899281	C	T	233899281	2	4	228	1	0	0	0	0	0	0	0	1	10414	747	26	4		4	NEU2	2	233899281	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1869349	233899281	9300092	270	14376										
UGT1A4	0	genome.wustl.edu	37	chr2	234681067	234681067	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctggtaccagtaccattcCttggacgtgattggtttcct	9	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	234681067	234681067	C	A	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1467	p.S489	0.453	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	127	0	0	89	55	38.19	-	-	-	A	234681067	C	A	234681067	2	1	228	1	0	0	0	0	0	0	0	1	17044	668	24	4		4	UGT1A4	2	234681067	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	781786	234681067	8518306	271	14377										
MLPH	0	genome.wustl.edu	37	chr2	238434429	238434429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctcccacaggatggccctGgggactgctgctgcactcgg	15	14	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	238434429	238434429	G	T	SNP	MLPH	ENST00000437893	human	ensembl	69_37n	1	novel	missense	c.281	p.W94L	0.000	NULL	pfam_Myelin-assoc_OBP	-	no_start_codon	MLPH	HGNC	ENSG00000115648	31	0	0	20	18	47.37	-	-	-	T	238434429	G	T	238434429	3	4	228	1	0	0	0	0	1	0	0	0	9704	1335	47	4	883	4	MLPH	2	238434429	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3753362	238434429	4764944	272	14378										
TRAF3IP1	0	genome.wustl.edu	37	chr2	239237830	239237830	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagacagagagaaagagtgaGggggggaaagagaaggagag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	239237830	239237830	G	-	DEL	TRAF3IP1	ENST00000373327	human	ensembl	69_37n	1	known	frame_shift_del	c.762	p.K257fs	0.019	pfam_Microtubule/TRAF3/DISC1-bd	pfam_Microtubule/TRAF3/DISC1-bd	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104	33	0	0	46	20	29.85	-	-	-	-	239237830	G	-	239237830	7	5	228	1	0	1	0	1	0	0	0	0	16536	991	35	0	780	0	TRAF3IP1	2	239237830	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	803401	239237830	3961543	273	14379										
ANKMY1	0	genome.wustl.edu	37	chr2	241463368	241463368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctggtgcacggtgagggcGaggccatcttcagcaagctg	16	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	241463368	241463368	G	A	SNP	ANKMY1	ENST00000272972	human	ensembl	69_37n	-1	known	missense	c.1499	p.S500L	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504	19	0	0	18	18	50	-	-	-	A	241463368	G	A	241463368	3	1	228	1	0	0	0	0	1	0	0	0	634	1059	37	1	1370	1	ANKMY1	2	241463368	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2225538	241463368	1736005	274	14380										
CAPN10	0	genome.wustl.edu	37	chr2	241536361	241536361	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggcttccatatcttccaggCaagctccttgccccagggag	10	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	241536361	241536361	C	T	SNP	CAPN10	ENST00000391984	human	ensembl	69_37n	1	known	splice_site	c.1743+2	e9+2	0.998	-	-	-	no_errors	CAPN10	HGNC	ENSG00000142330	12	0	0	7	11	61.11	-	-	-	T	241536361	C	T	241536361	5	4	228	1	0	0	0	0	0	0	1	0	2648	724	25	4	1779	4	CAPN10	2	241536361	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	72993	241536361	1663012	275	14381										
HDLBP	0	genome.wustl.edu	37	chr2	242195648	242195648	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacagcctgagccaactgtTccttctctccagtgaagaca	7	15	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	242195648	242195648	T	C	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.824	p.E275G	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	86	0	0	41	36	46.15	-	-	-	C	242195648	T	C	242195648	3	2	228	1	0	0	0	0	1	0	0	0	7076	1783	62	5	3070	5	HDLBP	2	242195648	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	659287	242195648	1003725	276	14382										
DTYMK	0	genome.wustl.edu	37	chr2	242625211	242625211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccagcgatttgcagaaaaaAgcaggtgcaccgagtgatcc	11	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	242625211	242625211	A	G	SNP	DTYMK	ENST00000305784	human	ensembl	69_37n	-1	known	missense	c.212	p.L71P	0.999	tigrfam_Thymidylate_kinase	tigrfam_Thymidylate_kinase	-	no_errors	DTYMK	HGNC	ENSG00000168393	138	0	0	65	46	41.44	-	-	-	G	242625211	A	G	242625211	3	3	228	1	0	0	0	0	1	0	0	0	4833	72	3	5	442	5	DTYMK	2	242625211	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	429563	242625211	574162	277	14383										
PDCD1	0	genome.wustl.edu	37	chr2	242794975	242794976	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcggggaaggcggccagcINSttgtccgtctggttgctggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	2	242794975	242794976	-	T	INS	PDCD1	ENST00000334409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.234_233	p.L79fs	0.998:0.997	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PDCD1	HGNC	ENSG00000188389	8	0	0	4	3	42.86	-	-	-	T	242794976	-	T	242794975	7	5	228	1	0	1	1	0	0	0	0	0	11688	796	28	0	648	0	PDCD1	2	242794975	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	169764	242794975	404398	278	14384										
CNTN4	0	genome.wustl.edu	37	chr3	2908567	2908567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgggaattatacctgtgtgGttaccaataccgtgacaaac	9	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	2908567	2908567	G	T	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.586	p.V196F	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	190	0	0	112	78	41.05	-	-	-	T	2908567	G	T	2908567	3	4	228	1	0	0	0	0	1	0	0	0	3673	1261	44	4	604	4	CNTN4	3	2908567	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		2908567	195113863	279	14385										
ARL8B	0	genome.wustl.edu	37	chr3	5220444	5220446	+	In_Frame_Del	DEL	ATT	ATT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcttggctataatcctagaAttattgtccgttcctctgaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	5220444	5220446	ATT	-	DEL	ARL8B	ENST00000419534	human	ensembl	69_37n	1	known	in_frame_del	c.468_470	p.L158in_frame_del	0.696:0.767:0.817	smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL8B	HGNC	ENSG00000134108	56	0	0	32	17	34.69	-	-	-	-	5220446	ATT	-	5220444	7	5	228	1	0	1	0	1	0	0	0	0	951	116	4	0		0	ARL8B	3	5220444	In_Frame_Del	DEL	ATT	TCGA-A8-A09Z-01A-11W-A019-09	2311877	5220444	192801986	280	14386										
RAD18	0	genome.wustl.edu	37	chr3	8955390	8955390	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctctatattttcgatttctcGaactatttcagcagctgtta	5	9	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	8955390	8955390	G	A	SNP	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	nonsense	c.904	p.R302*	1.000	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	79	0	0	38	22	36.67	-	-	-	A	8955390	G	A	8955390	4	1	228	1	0	0	0	0	0	1	0	0	13063	1066	37	1	607	1	RAD18	3	8955390	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3734946	8955390	189067040	281	14387										
FANCD2	0	genome.wustl.edu	37	chr3	10130560	10130560	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgaaggccatagaggagatTgctggtgttggtgtcccaga	15	7	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	10130560	10130560	T	C	SNP	FANCD2	ENST00000421731	human	ensembl	69_37n	1	known	missense	c.2108	p.L703S	0.839	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FANCD2	HGNC	ENSG00000144554	135	0	0	108	92	46	-	-	-	C	10130560	T	C	10130560	3	2	228	1	0	0	0	0	1	0	0	0	5711	1800	63	5	3747	5	FANCD2	3	10130560	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1175170	10130560	187891870	282	14388										
RAF1	0	genome.wustl.edu	37	chr3	12647703	12647703	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tataggtaaaaaattacctaAcaggcatcctggaaacagac	7	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	12647703	12647703	A	T	SNP	RAF1	ENST00000442415	human	ensembl	69_37n	-1	known	missense	c.677	p.V226D	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155	69	0	0	43	20	31.75	-	-	-	T	12647703	A	T	12647703	3	4	228	1	0	0	0	0	1	0	0	0	13085	43	2	5	1317	5	RAF1	3	12647703	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2517143	12647703	185374727	283	14389										
GRIP2	0	genome.wustl.edu	37	chr3	14537940	14537940	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctaccttgtgcatctccaaGggtgtaggcagcaacagctc	10	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	14537940	14537940	G	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.142	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	17	0	0	10	3	23.08	-	-	-	T	14537940	G	T	14537940	1	4	228	0	1	0	0	0	0	0	0	0	6839	987	35	4		4	GRIP2	3	14537940	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1890237	14537940	183484490	284	14390										
CAPN7	0	genome.wustl.edu	37	chr3	15259046	15259046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaagagaatgttgaagatgCtatagaattgtacacagaag	10	3	0	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	15259046	15259046	C	T	SNP	CAPN7	ENST00000253693	human	ensembl	69_37n	1	known	missense	c.326	p.A109V	1.000	pfam_MIT,smart_MIT	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN7	HGNC	ENSG00000131375	92	0	0	61	36	37.11	-	-	-	T	15259046	C	T	15259046	3	4	228	1	0	0	0	0	1	0	0	0	2656	797	28	4	336	4	CAPN7	3	15259046	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	721106	15259046	182763384	285	14391										
SATB1	0	genome.wustl.edu	37	chr3	18436023	18436023	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctcgtttcagttcatcgcgTacccactggtagatttcgga	10	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	18436023	18436023	T	C	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	silent	c.1137	p.V379	0.979	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	254	0	0	131	81	38.21	-	-	-	C	18436023	T	C	18436023	2	2	228	1	0	0	0	0	0	0	0	1	13940	1625	57	5		5	SATB1	3	18436023	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3176977	18436023	179586407	286	14392										
CLASP2	0	genome.wustl.edu	37	chr3	33633901	33633901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acatacgctgtgattgagacAccatttttgttcgacttctt	7	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	33633901	33633901	A	G	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.2054	p.V685A	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	92	0	0	12	28	70	-	-	-	G	33633901	A	G	33633901	3	3	228	1	0	0	0	0	1	0	0	0	3485	159	6	5	2538	5	CLASP2	3	33633901	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	15197878	33633901	164388529	287	14393										
MLH1	0	genome.wustl.edu	37	chr3	37092142	37092142	+	Nonstop_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaaagtctttgagaggtgtTaaatatggttatttatgcac	9	4	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	37092142	37092142	T	A	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	nonstop	c.2269	p.*757K	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	210	0	0	26	42	61.76	-	-	-	A	37092142	T	A	37092142	4	1	228	1	0	0	0	0	0	0	0	0	9688	1767	61	5	2343	5	MLH1	3	37092142	Nonstop_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3458241	37092142	160930288	288	14394										
TTC21A	0	genome.wustl.edu	37	chr3	39178863	39178863	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcgctgggcagcttcatccaGatagcgcaggctgaggtgtg	16	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	39178863	39178863	G	T	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.3459	p.Q1153H	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	23	0	0	2	13	86.67	-	-	-	T	39178863	G	T	39178863	3	4	228	1	0	0	0	0	1	0	0	0	16784	933	33	2	3557	2	TTC21A	3	39178863	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2086721	39178863	158843567	289	14395										
SMARCC1	0	genome.wustl.edu	37	chr3	47703876	47703877	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagggtccaccacagatgccINSaaaaaagcaacagtactcat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	47703876	47703877	-	A	INS	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2106_2105	p.L702fs	1.000:1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	40	0	0	10	17	62.96	-	-	-	A	47703877	-	A	47703876	7	5	228	1	0	1	1	0	0	0	0	0	14864	593	21	0	1247	0	SMARCC1	3	47703876	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	8525013	47703876	150318554	290	14396										
CCDC51	0	genome.wustl.edu	37	chr3	48473859	48473859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtagagcacaggcagtgtggCcacaaatgtcacacaggtga	13	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	48473859	48473859	C	T	SNP	CCDC51	ENST00000395694	human	ensembl	69_37n	-1	known	missense	c.1195	p.A399T	0.059	NULL	NULL	-	no_errors	CCDC51	HGNC	ENSG00000164051	51	0	0	14	21	60	-	-	-	T	48473859	C	T	48473859	3	4	228	1	0	0	0	0	1	0	0	0	2848	739	26	4	44	4	CCDC51	3	48473859	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	769983	48473859	149548571	291	14397										
COL7A1	0	genome.wustl.edu	37	chr3	48621800	48621801	+	Frame_Shift_Ins	INS	-	-	G													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagtggtccacgaggtccaINSggggggccctgatggaggag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	48621800	48621801	-	G	INS	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4128_4127	p.G1377fs	0.916:0.893	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	29	0	0	12	11	47.83	-	-	-	G	48621801	-	G	48621800	7	5	228	1	0	1	1	0	0	0	0	0	3734	175	7	0	5038	0	COL7A1	3	48621800	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	147941	48621800	149400630	292	14398										
CELSR3	0	genome.wustl.edu	37	chr3	48694488	48694488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcctgcagctcctcggagcTgaaccagggccctgcagcgc	12	17	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	48694488	48694488	T	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.4042	p.S1348G	1.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	18	0	0	2	10	83.33	-	-	-	C	48694488	T	C	48694488	3	2	228	1	0	0	0	0	1	0	0	0	3252	1580	55	5	6032	5	CELSR3	3	48694488	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	72688	48694488	149327942	293	14399										
RHOA	0	genome.wustl.edu	37	chr3	49397662	49397663	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacaagacaaggcacccagaINSttttttcttcccacgtctag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	49397662	49397663	-	T	INS	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	frame_shift_ins	c.562_561	p.S187fs	1.000:1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	224	0	0	33	58	63.74	-	-	-	T	49397663	-	T	49397662	7	5	228	1	0	1	1	0	0	0	0	0	13415	333	12	0	23	0	RHOA	3	49397662	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	703174	49397662	148624768	294	14400										
ZNF654	0	genome.wustl.edu	37	chr3	88189791	88189791	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcaaacacctttagtttcatCagatcctgctttgaaaattg	6	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	88189791	88189791	C	T	SNP	ZNF654	ENST00000309495	human	ensembl	69_37n	1	known	missense	c.1331	p.S444L	0.983	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105	341	1	0.29	159	118	42.6	-	-	-	T	88189791	C	T	88189791	3	4	228	1	0	0	0	0	1	0	0	0	18163	838	29	2	1333	2	ZNF654	3	88189791	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	38792129	88189791	109832639	295	14401										
DCBLD2	0	genome.wustl.edu	37	chr3	98531251	98531251	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccattgggtaggattcactcTaataaaacgtgcaataattg	8	7	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	98531251	98531251	T	C	SNP	DCBLD2	ENST00000326857	human	ensembl	69_37n	-1	known	missense	c.1288	p.R430G	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_LCCL,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019	273	0	0	135	112	45.34	-	-	-	C	98531251	T	C	98531251	3	2	228	1	0	0	0	0	1	0	0	0	4312	1530	53	5	1067	5	DCBLD2	3	98531251	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	10341460	98531251	99491179	296	14402										
TBC1D23	0	genome.wustl.edu	37	chr3	100020784	100020784	+	RNA	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggattttatttataagagccTttttttccccttcattttca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	100020784	100020784	T	-	DEL	TBC1D23	ENST00000496167	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	TBC1D23	HGNC	ENSG00000036054	19	0	0	17	11	39.29	-	-	-	-	100020784	T	-	100020784	6	5	228	0	1	1	0	1	0	0	0	0	15705	1624	56	0		0	TBC1D23	3	100020784	RNA	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	1489533	100020784	98001646	297	14403										
TRAT1	0	genome.wustl.edu	37	chr3	108557811	108557811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagctactccagtgaccacaCcaggtatgttgtgattcagt	9	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	108557811	108557811	C	T	SNP	TRAT1	ENST00000295756	human	ensembl	69_37n	1	known	missense	c.149	p.T50I	0.996	NULL	NULL	-	no_errors	TRAT1	HGNC	ENSG00000163519	121	0	0	70	43	38.05	-	-	-	T	108557811	C	T	108557811	3	4	228	1	0	0	0	0	1	0	0	0	16562	507	18	4	159	4	TRAT1	3	108557811	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8537027	108557811	89464619	298	14404										
KIAA2018	0	genome.wustl.edu	37	chr3	113377643	113377643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgtagtgcttgttgtagaTgacaaaccaggaacctgaga	11	7	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	113377643	113377643	T	C	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	silent	c.2886	p.S962	0.970	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	289	0	0	172	131	43.09	-	-	-	C	113377643	T	C	113377643	2	2	228	1	0	0	0	0	0	0	0	1	8320	1451	51	5		5	KIAA2018	3	113377643	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4819832	113377643	84644787	299	14405										
KIAA1407	0	genome.wustl.edu	37	chr3	113750547	113750547	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccttcaccattttttcctCatctggaagaatgtgagtac	6	10	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	113750547	113750547	C	T	SNP	KIAA1407	ENST00000295878	human	ensembl	69_37n	-1	known	missense	c.898	p.E300K	0.990	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617	134	0	0	57	48	45.71	-	-	-	T	113750547	C	T	113750547	3	4	228	1	0	0	0	0	1	0	0	0	8281	835	29	2	1956	2	KIAA1407	3	113750547	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	372904	113750547	84271883	300	14406										
C3orf30	0	genome.wustl.edu	37	chr3	118866274	118866274	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcagttgaaatggaaactcAgaatgcaaccactatcccac	6	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	118866274	118866274	A	C	SNP	C3orf30	ENST00000295622	human	ensembl	69_37n	1	known	missense	c.1238	p.Q413P	0.003	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	367	0	0	123	107	46.52	-	-	-	C	118866274	A	C	118866274	3	2	228	1	0	0	0	0	1	0	0	0	2240	188	7	5	1240	5	C3orf30	3	118866274	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5115727	118866274	79156156	301	14407										
C3orf15	0	genome.wustl.edu	37	chr3	119465995	119465995	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accatagtactataagctccTacctagaagacataatactg	5	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	119465995	119465995	T	C	SNP	C3orf15	ENST00000273390	human	ensembl	69_37n	1	known	missense	c.1936	p.Y646H	1.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	C3orf15	HGNC	ENSG00000183833	182	0	0	151	38	20.11	-	-	-	C	119465995	T	C	119465995	3	2	228	1	0	0	0	0	1	0	0	0	2229	1522	53	5	1994	5	C3orf15	3	119465995	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	599721	119465995	78556435	302	14408										
GPR156	0	genome.wustl.edu	37	chr3	119886428	119886428	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctgcacatgtagcctgctGtgtgccccaggaacagtcct	10	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	119886428	119886428	G	A	SNP	GPR156	ENST00000315843	human	ensembl	69_37n	-1	known	silent	c.1896	p.H632	0.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	72	0	0	43	36	45.57	-	-	-	A	119886428	G	A	119886428	2	1	228	1	0	0	0	0	0	0	0	1	6711	1368	48	4		4	GPR156	3	119886428	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	420433	119886428	78136002	303	14409										
CASR	0	genome.wustl.edu	37	chr3	122003223	122003223	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaatgaagccaagttcatcAccttcagcatgctcatcttc	5	13	6	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	122003223	122003223	A	G	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.2452	p.T818A	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	104	0	0	64	50	43.86	-	-	-	G	122003223	A	G	122003223	3	3	228	1	0	0	0	0	1	0	0	0	2707	159	6	5	2474	5	CASR	3	122003223	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2116795	122003223	76019207	304	14410										
PDIA5	0	genome.wustl.edu	37	chr3	122842912	122842912	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcttctccgcttcctcccaGgtgctggccgggatgaatgt	11	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	122842912	122842912	G	T	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	splice_site	c.610-1	e9-1	1.000	-	-	-	no_errors	PDIA5	HGNC	ENSG00000065485	80	0	0	60	38	38.78	-	-	-	T	122842912	G	T	122842912	5	4	228	1	0	0	0	0	0	0	1	0	11744	1014	35	4	643	4	PDIA5	3	122842912	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	839689	122842912	75179518	305	14411										
KALRN	0	genome.wustl.edu	37	chr3	124175525	124175525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgggaggtcaagctgcgggaCgccaaccacgaagtcaatga	14	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	124175525	124175525	C	T	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	1	novel	missense	c.3704	p.T1235M	0.779	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	114	0	0	124	76	38	-	-	-	T	124175525	C	T	124175525	3	4	228	1	0	0	0	0	1	0	0	0	8029	535	19	1	3888	1	KALRN	3	124175525	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1332613	124175525	73846905	306	14412										
HEG1	0	genome.wustl.edu	37	chr3	124689579	124689579	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgcaagaatgccgtgatcCtggcagtccagtgtaggccg	13	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	124689579	124689579	C	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	nonsense	c.4063	p.G1355*	1.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	37	0	0	15	9	37.5	-	-	-	A	124689579	C	A	124689579	4	1	228	1	0	0	0	0	0	1	0	0	7095	690	24	4	86	4	HEG1	3	124689579	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	514054	124689579	73332851	307	14413										
ATP2C1	0	genome.wustl.edu	37	chr3	130672715	130672715	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgacaggtgagacaacgccTtgttctaaggtgacagctcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	130672715	130672715	T	-	DEL	ATP2C1	ENST00000393221	human	ensembl	69_37n	1	known	frame_shift_del	c.684	p.C229fs	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C1	HGNC	ENSG00000017260	177	0	0	91	64	40	-	-	-	-	130672715	T	-	130672715	7	5	228	1	0	1	0	1	0	0	0	0	1147	1596	56	0	612	0	ATP2C1	3	130672715	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	5983136	130672715	67349715	308	14414										
NEK11	0	genome.wustl.edu	37	chr3	130799340	130799340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggccaatttggaagcccaaCtcctctccaagctggaccac	8	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	130799340	130799340	C	T	SNP	NEK11	ENST00000383366	human	ensembl	69_37n	1	known	missense	c.244	p.L82F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670	129	0	0	63	54	46.15	-	-	-	T	130799340	C	T	130799340	3	4	228	1	0	0	0	0	1	0	0	0	10395	565	20	4	250	4	NEK11	3	130799340	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	126625	130799340	67223090	309	14415										
CPNE4	0	genome.wustl.edu	37	chr3	131261488	131261488	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcagaatcccatcatcaccGtccagcatctgcatgtcact	5	16	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	131261488	131261488	G	A	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	silent	c.1506	p.D502	0.022	smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	103	0	0	67	30	30.93	-	-	-	A	131261488	G	A	131261488	2	1	228	1	0	0	0	0	0	0	0	1	3844	1136	40	1		1	CPNE4	3	131261488	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	462148	131261488	66760942	310	14416										
DNAJC13	0	genome.wustl.edu	37	chr3	132207178	132207178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accctatccttgttgagaagGttgctattttgttataccat	7	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	132207178	132207178	G	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.3304	p.V1102F	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	90	0	0	41	31	43.06	-	-	-	T	132207178	G	T	132207178	3	4	228	1	0	0	0	0	1	0	0	0	4667	1261	44	4	3418	4	DNAJC13	3	132207178	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	945690	132207178	65815252	311	14417										
ARMC8	0	genome.wustl.edu	37	chr3	137942264	137942264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcagcaagaaacctcaagCacagagctgaaaactgaatg	8	10	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	137942264	137942264	C	T	SNP	ARMC8	ENST00000469044	human	ensembl	69_37n	1	known	silent	c.228	p.S76	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098	154	0	0	63	46	42.2	-	-	-	T	137942264	C	T	137942264	2	4	228	1	0	0	0	0	0	0	0	1	961	709	25	4		4	ARMC8	3	137942264	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5735086	137942264	60080166	312	14418										
PRR23B	0	genome.wustl.edu	37	chr3	138739117	138739117	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgacgtcctccctgacagcGcccaggaaaacgtccacttc	8	17	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	138739117	138739117	G	A	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	silent	c.387	p.G129	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	82	0	0	54	42	42.86	-	-	-	A	138739117	G	A	138739117	2	1	228	1	0	0	0	0	0	0	0	1	12676	1074	38	1		1	PRR23B	3	138739117	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	796853	138739117	59283313	313	14419										
TRIM42	0	genome.wustl.edu	37	chr3	140401419	140401419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccccatgtgcagccggctgCgcctgcactcattcatgctg	11	16	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	140401419	140401419	C	T	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.457	p.R153C	1.000	pfscan_Znf_RING	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	123	0	0	58	50	46.3	-	-	-	T	140401419	C	T	140401419	3	4	228	1	0	0	0	0	1	0	0	0	16613	768	27	1	463	1	TRIM42	3	140401419	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1662302	140401419	57621011	314	14420										
TRIM42	0	genome.wustl.edu	37	chr3	140401814	140401814	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggacaccagcgccgaggaAcaggacgagaagatctgcat	14	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	140401814	140401814	A	G	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	silent	c.852	p.E284	0.966	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	100	0	0	43	30	41.1	-	-	-	G	140401814	A	G	140401814	2	3	228	1	0	0	0	0	0	0	0	1	16613	40	2	5		5	TRIM42	3	140401814	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	395	140401814	57620616	315	14421										
ATR	0	genome.wustl.edu	37	chr3	142188331	142188331	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtcaaaaattgatatggagCtaaatagtttgtatgctctg	9	4	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	142188331	142188331	C	A	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.6400	p.A2134S	1.000	pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	305	0	0	160	119	42.65	-	-	-	A	142188331	C	A	142188331	3	1	228	1	0	0	0	0	1	0	0	0	1208	797	28	4	1574	4	ATR	3	142188331	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1786517	142188331	55834099	316	14422										
PAQR9	0	genome.wustl.edu	37	chr3	142681557	142681557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcaccagggcgcggtaggCggcgataaggcgcgtgcagt	18	11	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	142681557	142681557	C	T	SNP	PAQR9	ENST00000340634	human	ensembl	69_37n	-1	known	missense	c.622	p.A208T	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582	11	0	0	5	5	50	-	-	-	T	142681557	C	T	142681557	3	4	228	1	0	0	0	0	1	0	0	0	11515	768	27	1	515	1	PAQR9	3	142681557	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	493226	142681557	55340873	317	14423										
SLC9A9	0	genome.wustl.edu	37	chr3	143185970	143185970	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcgtagtggtaaacatcaTttgtttgggctgagattctg	12	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	143185970	143185970	T	C	SNP	SLC9A9	ENST00000316549	human	ensembl	69_37n	-1	known	missense	c.1378	p.M460V	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804	78	0	0	49	39	44.32	-	-	-	C	143185970	T	C	143185970	3	2	228	1	0	0	0	0	1	0	0	0	14810	1493	52	5	579	5	SLC9A9	3	143185970	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	504413	143185970	54836460	318	14424										
GPR87	0	genome.wustl.edu	37	chr3	151012735	151012735	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggtccaaatcctgcatcaTggactattcgaaatggaaat	8	8	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	151012735	151012735	T	C	SNP	GPR87	ENST00000260843	human	ensembl	69_37n	-1	known	missense	c.299	p.H100R	0.086	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_P2Y13_purnocptor,prints_UDPG_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271	242	0	0	138	78	36.11	-	-	-	C	151012735	T	C	151012735	3	2	228	1	0	0	0	0	1	0	0	0	6766	1464	51	5	781	5	GPR87	3	151012735	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7826765	151012735	47009695	319	14425										
IGSF10	0	genome.wustl.edu	37	chr3	151154317	151154317	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ataaatcagtatcatcagttCataatgcatttatttacaag	4	6	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	151154317	151154317	C	A	SNP	IGSF10	ENST00000493841	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.728	-	-	-	no_errors	IGSF10	HGNC	ENSG00000152580	46	0	0	24	13	35.14	-	-	-	A	151154317	C	A	151154317	1	1	228	0	1	0	0	0	0	0	0	0	7651	841	29	2		2	IGSF10	3	151154317	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	141582	151154317	46868113	320	14426										
PDCD10	0	genome.wustl.edu	37	chr3	167405092	167405092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttacaaattctttcttttGgtgttcaagtgcctacagtc	6	9	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	167405092	167405092	G	T	SNP	PDCD10	ENST00000392750	human	ensembl	69_37n	-1	known	missense	c.487	p.Q163K	1.000	NULL	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209	219	0	0	91	79	46.47	-	-	-	T	167405092	G	T	167405092	3	4	228	1	0	0	0	0	1	0	0	0	11689	1357	47	4	159	4	PDCD10	3	167405092	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	16250775	167405092	30617338	321	14427										
MYNN	0	genome.wustl.edu	37	chr3	169501311	169501311	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtgggaaaagttttatttcCtcaggagagctcaacaaaca	9	7	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	169501311	169501311	C	A	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	silent	c.1446	p.S482	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	368	0	0	188	137	42.15	-	-	-	A	169501311	C	A	169501311	2	1	228	1	0	0	0	0	0	0	0	1	10133	668	24	4		4	MYNN	3	169501311	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2096219	169501311	28521119	322	14428										
SOX2	0	genome.wustl.edu	37	chr3	181430614	181430614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggcgcgggcgtgaaccagCgcatggacagttacgcgcac	16	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	181430614	181430614	C	T	SNP	SOX2	ENST00000325404	human	ensembl	69_37n	1	known	missense	c.466	p.R156C	1.000	pfam_TF_SOX	pfam_TF_SOX,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX2	HGNC	ENSG00000181449	25	0	0	11	5	31.25	-	-	-	T	181430614	C	T	181430614	3	4	228	1	0	0	0	0	1	0	0	0	15038	768	27	1	468	1	SOX2	3	181430614	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	11929303	181430614	16591816	323	14429										
ATP11B	0	genome.wustl.edu	37	chr3	182590210	182590210	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagagtatgaggaaatagatAaacgcatatttgaagccagg	11	4	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	182590210	182590210	A	T	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	nonsense	c.1933	p.K645*	0.983	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	185	0	0	125	69	35.57	-	-	-	T	182590210	A	T	182590210	4	4	228	1	0	0	0	0	0	1	0	0	1124	363	13	5	2003	5	ATP11B	3	182590210	Nonsense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1159596	182590210	15432220	324	14430										
IGF2BP2	0	genome.wustl.edu	37	chr3	185376147	185376147	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acagagtgatgatgcgggaaCgggccaaactggtgatgggg	18	6	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	185376147	185376147	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	silent	c.1251	p.P417	0.997	NULL	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	16	0	0	17	8	32	-	-	-	T	185376147	C	T	185376147	2	4	228	1	0	0	0	0	0	0	0	1	7628	523	19	1		1	IGF2BP2	3	185376147	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2785937	185376147	12646283	325	14431										
KNG1	0	genome.wustl.edu	37	chr3	186457192	186457192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accctactgtcaactgtcaaCcactgggaatggtatgattc	8	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	186457192	186457192	C	T	SNP	KNG1	ENST00000265023	human	ensembl	69_37n	1	known	missense	c.1114	p.P372S	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889	89	0	0	49	44	47.31	-	-	-	T	186457192	C	T	186457192	3	4	228	1	0	0	0	0	1	0	0	0	8480	507	18	4	1148	4	KNG1	3	186457192	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1081045	186457192	11565238	326	14432										
RTP2	0	genome.wustl.edu	37	chr3	187416724	187416724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accgagcccgcccgctgggcGcggtccaggaacatgtggaa	15	14	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	187416724	187416724	G	A	SNP	RTP2	ENST00000358241	human	ensembl	69_37n	-1	known	silent	c.240	p.R80	0.051	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471	28	0	0	32	20	38.46	-	-	-	A	187416724	G	A	187416724	2	1	228	1	0	0	0	0	0	0	0	1	13820	1074	38	1		1	RTP2	3	187416724	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	959532	187416724	10605706	327	14433										
FGF12	0	genome.wustl.edu	37	chr3	192053164	192053164	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acttactgaactgtagagatAgccttcaccattcatggcca	7	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	192053164	192053164	A	G	SNP	FGF12	ENST00000454309	human	ensembl	69_37n	-1	known	missense	c.400	p.Y134H	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF12	HGNC	ENSG00000114279	230	0	0	150	86	36.44	-	-	-	G	192053164	A	G	192053164	3	3	228	1	0	0	0	0	1	0	0	0	5887	420	15	5	343	5	FGF12	3	192053164	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4636440	192053164	5969266	328	14434										
MUC4	0	genome.wustl.edu	37	chr3	195516763	195516763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgtgtccattgtgtctggGcgcctgcccctgttgttttt	11	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	195516763	195516763	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.1688	p.A563V	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	299	0	0	191	159	45.43	-	-	-	A	195516763	G	A	195516763	3	1	228	1	0	0	0	0	1	0	0	0	10050	1203	42	4		4	MUC4	3	195516763	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3463599	195516763	2505667	329	14435										
WDR53	0	genome.wustl.edu	37	chr3	196281251	196281251	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcatctgttactgaagcgTtagtatttccaccctgcttg	7	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	196281251	196281251	T	C	SNP	WDR53	ENST00000332629	human	ensembl	69_37n	-1	known	missense	c.908	p.N303S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798	243	0	0	159	107	40.23	-	-	-	C	196281251	T	C	196281251	3	2	228	1	0	0	0	0	1	0	0	0	17402	1725	60	5	172	5	WDR53	3	196281251	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	764488	196281251	1741179	330	14436										
NCBP2	0	genome.wustl.edu	37	chr3	196664216	196664216	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacataccatttcacggtttAaaaaaaaaattcacccaaac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	3	196664216	196664216	A	-	DEL	NCBP2	ENST00000467803	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	NCBP2	HGNC	ENSG00000114503	46	0	0	22	17	40.48	-	-	-	-	196664216	A	-	196664216	6	5	228	0	1	1	0	1	0	0	0	0	10284	377	13	0		0	NCBP2	3	196664216	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	382965	196664216	1358214	331	14437										
ZNF721	0	genome.wustl.edu	37	chr4	437287	437287	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctccagtatgaattctcctAtgtacataaaggtttgcgga	8	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	437287	437287	A	G	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	silent	c.969	p.H323	0.068	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	259	1	0.38	114	94	45.19	-	-	-	G	437287	A	G	437287	2	3	228	1	0	0	0	0	0	0	0	1	18218	446	16	5		5	ZNF721	4	437287	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09		437287	190716989	332	14438										
POLN	0	genome.wustl.edu	37	chr4	2172884	2172884	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctgcaacaaaatgagcttCttgctccaattccttgagac	6	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	2172884	2172884	C	T	SNP	POLN	ENST00000382865	human	ensembl	69_37n	-1	known	missense	c.1399	p.E467K	0.999	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	223	0	0	128	106	45.3	-	-	-	T	2172884	C	T	2172884	3	4	228	1	0	0	0	0	1	0	0	0	12281	922	32	2	1363	2	POLN	4	2172884	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1735597	2172884	188981392	333	14439										
ADD1	0	genome.wustl.edu	37	chr4	2930127	2930127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaggctgccccctcagctgtCgaggagggggccgccgcgga	18	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	2930127	2930127	C	T	SNP	ADD1	ENST00000514940	human	ensembl	69_37n	1	known	missense	c.1301	p.S434L	0.224	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_start_codon:pseudogene:no_stop_codon	ADD1	HGNC	ENSG00000087274	36	0	0	27	20	41.67	-	-	-	T	2930127	C	T	2930127	3	4	228	1	0	0	0	0	1	0	0	0	304	871	31	1	2276	1	ADD1	4	2930127	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	757243	2930127	188224149	334	14440										
MFSD10	0	genome.wustl.edu	37	chr4	2934332	2934332	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcctgtgcacttaccatgcCttgactgcgggccagaggcg	13	13	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	2934332	2934332	C	A	SNP	MFSD10	ENST00000329687	human	ensembl	69_37n	-1	known	missense	c.526	p.G176C	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD10	HGNC	ENSG00000109736	45	0	0	14	11	44	-	-	-	A	2934332	C	A	2934332	3	1	228	1	0	0	0	0	1	0	0	0	9599	681	24	4	877	4	MFSD10	4	2934332	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4205	2934332	188219944	335	14441										
ZBTB49	0	genome.wustl.edu	37	chr4	4304255	4304255	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccataaacacgcagctggtcCcagtcaggagagagttgttg	12	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	4304255	4304255	C	A	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	missense	c.692	p.P231H	0.585	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	251	0	0	136	113	45.38	-	-	-	A	4304255	C	A	4304255	3	1	228	1	0	0	0	0	1	0	0	0	17646	623	22	4	698	4	ZBTB49	4	4304255	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1369923	4304255	186850021	336	14442										
DRD5	0	genome.wustl.edu	37	chr4	9784953	9784953	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgacgaggaggagggtcctTtcgatcgcatgttccagatc	13	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	9784953	9784953	T	A	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	1	known	missense	c.1300	p.F434I	0.957	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	56	0	0	44	29	39.73	-	-	-	A	9784953	T	A	9784953	3	1	228	1	0	0	0	0	1	0	0	0	4795	1841	64	5	1302	5	DRD5	4	9784953	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5480698	9784953	181369323	337	14443										
GPR125	0	genome.wustl.edu	37	chr4	22456505	22456505	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttacagccgaaccagattggTgagtcctcgaaatatgtctg	10	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	22456505	22456505	T	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.457	p.T153S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	175	1	0.57	89	63	41.18	-	-	-	A	22456505	T	A	22456505	3	1	228	1	0	0	0	0	1	0	0	0	6689	1696	59	5	3572	5	GPR125	4	22456505	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	12671552	22456505	168697771	338	14444										
ANAPC4	0	genome.wustl.edu	37	chr4	25391815	25391815	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attgagctttatgcttatggAatgtttaaaattgctcgagt	9	4	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	25391815	25391815	A	G	SNP	ANAPC4	ENST00000510092	human	ensembl	69_37n	1	known	silent	c.573	p.G191	1.000	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	153	0	0	77	65	45.77	-	-	-	G	25391815	A	G	25391815	2	3	228	1	0	0	0	0	0	0	0	1	604	233	9	5		5	ANAPC4	4	25391815	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2935310	25391815	165762461	339	14445										
TBC1D1	0	genome.wustl.edu	37	chr4	38020014	38020014	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctcatcagtcctgacaccAaaaaaatagcattggagaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	38020014	38020014	A	-	DEL	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	frame_shift_del	c.922	p.I310fs	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	130	1	0.76	91	42	30.88	-	-	-	-	38020014	A	-	38020014	7	5	228	1	0	1	0	1	0	0	0	0	15689	131	5	0	932	0	TBC1D1	4	38020014	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	12628199	38020014	153134262	340	14446										
LIMCH1	0	genome.wustl.edu	37	chr4	41664932	41664932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagctgaagaatgatgtgtcGgaagaaaaagaccagaagaa	12	5	0	7			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	41664932	41664932	G	A	SNP	LIMCH1	ENST00000508466	human	ensembl	69_37n	1	novel	missense	c.1571	p.R524Q	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LIMCH1	HGNC	ENSG00000064042	154	0	0	104	85	44.97	-	-	-	A	41664932	G	A	41664932	3	1	228	1	0	0	0	0	1	0	0	0	8852	1103	39	1	2153	1	LIMCH1	4	41664932	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3644918	41664932	149489344	341	14447										
ATP8A1	0	genome.wustl.edu	37	chr4	42526832	42526832	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtaatttctttgtattttgaCgtctctgccagtcgatcata	7	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	42526832	42526832	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	69_37n	-1	known	silent	c.1755	p.T585	0.985	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A1	HGNC	ENSG00000124406	135	0	0	57	30	34.48	-	-	-	T	42526832	C	T	42526832	2	4	228	1	0	0	0	0	0	0	0	1	1196	523	19	1		1	ATP8A1	4	42526832	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	861900	42526832	148627444	342	14448										
GABRB1	0	genome.wustl.edu	37	chr4	47408912	47408914	+	In_Frame_Del	DEL	AGA	AGA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaagaccagagtgccaatgAgaagaataaactggagatga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	47408912	47408914	AGA	-	DEL	GABRB1	ENST00000295454	human	ensembl	69_37n	1	known	in_frame_del	c.1049_1051	p.K351in_frame_del	1.000:1.000:1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	150	0	0	85	44	34.11	-	-	-	-	47408914	AGA	-	47408912	7	5	228	1	0	1	0	1	0	0	0	0	6215	304	11	0	1079	0	GABRB1	4	47408912	In_Frame_Del	DEL	AGA	TCGA-A8-A09Z-01A-11W-A019-09	4882080	47408912	143745364	343	14449										
FRYL	0	genome.wustl.edu	37	chr4	48548205	48548205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgttatttcctaagctgaTactagaagaggtagaacttg	9	6	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	48548205	48548205	T	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.5158	p.I1720V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	60	0	0	24	15	38.46	-	-	-	C	48548205	T	C	48548205	3	2	228	1	0	0	0	0	1	0	0	0	6113	1406	49	5	3975	5	FRYL	4	48548205	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1139293	48548205	142606071	344	14450										
KIAA1211	0	genome.wustl.edu	37	chr4	57176871	57176871	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctctaagtcctctgaatctcCctggagctggaagtgagatg	11	10	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	57176871	57176871	C	T	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	missense	c.325	p.P109S	0.175	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	142	0	0	66	50	43.1	-	-	-	T	57176871	C	T	57176871	3	4	228	1	0	0	0	0	1	0	0	0	8267	623	22	4	335	4	KIAA1211	4	57176871	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8628666	57176871	133977405	345	14451										
PPAT	0	genome.wustl.edu	37	chr4	57272783	57272783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acattttcctgtggtggcatAcctggtgtgtccaattccaa	9	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	57272783	57272783	A	G	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	missense	c.280	p.Y94H	1.000	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	156	0	0	82	47	36.43	-	-	-	G	57272783	A	G	57272783	3	3	228	1	0	0	0	0	1	0	0	0	12375	391	14	5	1309	5	PPAT	4	57272783	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	95912	57272783	133881493	346	14452										
CENPC1	0	genome.wustl.edu	37	chr4	68355753	68355753	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taatatcaatttcccagtagAaaaaaagggtgtatccaatg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	68355753	68355753	A	-	DEL	CENPC1	ENST00000273853	human	ensembl	69_37n	-1	known	frame_shift_del	c.2602	p.S868fs	1.000	pfam_Mif2/CENP-C_cupin,superfamily_RmlC_Cupin	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC1	HGNC	ENSG00000145241	68	0	0	31	10	24.39	-	-	-	-	68355753	A	-	68355753	7	5	228	1	0	1	0	1	0	0	0	0	3258	246	9	0	241	0	CENPC1	4	68355753	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	11082970	68355753	122798523	347	14453										
DCK	0	genome.wustl.edu	37	chr4	71859603	71859603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctttctcagccagctctgaGgggacccgcatcaagaaaat	9	12	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	71859603	71859603	G	T	SNP	DCK	ENST00000286648	human	ensembl	69_37n	1	known	missense	c.51	p.E17D	0.497	NULL	pfam_Deoxynucleoside_kinase	-	no_errors	DCK	HGNC	ENSG00000156136	20	0	0	16	14	46.67	-	-	-	T	71859603	G	T	71859603	3	4	228	1	0	0	0	0	1	0	0	0	4321	991	35	4	53	4	DCK	4	71859603	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3503850	71859603	119294673	348	14454										
GC	0	genome.wustl.edu	37	chr4	72620820	72620820	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttctgcttagttcaaatgTatacctagcatgagggagaa	9	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	72620820	72620820	T	C	SNP	GC	ENST00000273951	human	ensembl	69_37n	-1	known	missense	c.1039	p.T347A	0.013	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_Serum_albumin	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_Serum_albumin	-	no_errors	GC	HGNC	ENSG00000145321	149	0	0	59	71	54.62	-	-	-	C	72620820	T	C	72620820	3	2	228	1	0	0	0	0	1	0	0	0	6332	1638	57	5	401	5	GC	4	72620820	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	761217	72620820	118533456	349	14455										
NPFFR2	0	genome.wustl.edu	37	chr4	73013014	73013014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaatttcactcttcagggctGcagttcctcacacaggcagg	10	12	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	73013014	73013014	G	A	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.1054	p.A352T	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	181	0	0	82	67	44.97	-	-	-	A	73013014	G	A	73013014	3	1	228	1	0	0	0	0	1	0	0	0	10650	1319	46	4	1074	4	NPFFR2	4	73013014	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	392194	73013014	118141262	350	14456										
ANKRD17	0	genome.wustl.edu	37	chr4	74021428	74021428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catgtcctccattagcagcaGccattaaaggtgtaatgtca	8	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	74021428	74021428	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.920	p.A307V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	104	0	0	59	39	39.8	-	-	-	A	74021428	G	A	74021428	3	1	228	1	0	0	0	0	1	0	0	0	646	971	34	4	7011	4	ANKRD17	4	74021428	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1008414	74021428	117132848	351	14457										
FRAS1	0	genome.wustl.edu	37	chr4	79321966	79321966	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctgcagatcaccaacagaAtcttacaggccgaggctcct	9	13	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	79321966	79321966	A	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.4054	p.I1352F	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	81	0	0	49	22	30.99	-	-	-	T	79321966	A	T	79321966	3	4	228	1	0	0	0	0	1	0	0	0	6090	101	4	5	4172	5	FRAS1	4	79321966	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5300538	79321966	111832310	352	14458										
SEC31A	0	genome.wustl.edu	37	chr4	83740277	83740277	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacaactttgagaactggcaTgaaagcagaggtctcactga	10	8	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	83740277	83740277	T	C	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.3652	p.M1218V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	137	0	0	78	58	42.65	-	-	-	C	83740277	T	C	83740277	3	2	228	1	0	0	0	0	1	0	0	0	14086	1464	51	5	53	5	SEC31A	4	83740277	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4418311	83740277	107413999	353	14459										
LIN54	0	genome.wustl.edu	37	chr4	83867549	83867549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgctggacattgggagcagTtgccagaggaataattgtct	13	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	83867549	83867549	T	C	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.1030	p.T344A	0.974	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	398	0	0	260	177	40.5	-	-	-	C	83867549	T	C	83867549	3	2	228	1	0	0	0	0	1	0	0	0	8865	1725	60	5	1255	5	LIN54	4	83867549	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	127272	83867549	107286727	354	14460										
MRPS18C	0	genome.wustl.edu	37	chr4	84382173	84382173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcacaaaagcaattaagagaGctcaaataatgggtaagaaa	8	5	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	84382173	84382173	G	A	SNP	MRPS18C	ENST00000295491	human	ensembl	69_37n	1	known	missense	c.340	p.A114T	1.000	pfam_Ribosomal_S18,superfamily_Ribosomal_S18,tigrfam_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18,tigrfam_Ribosomal_S18	-	no_errors	MRPS18C	HGNC	ENSG00000163319	214	0	0	115	72	38.5	-	-	-	A	84382173	G	A	84382173	3	1	228	1	0	0	0	0	1	0	0	0	9902	971	34	4	358	4	MRPS18C	4	84382173	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	514624	84382173	106772103	355	14461										
PTPN13	0	genome.wustl.edu	37	chr4	87607921	87607921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctgattatgaagtgcctcAgagccaagtaagttaagttt	11	6	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	87607921	87607921	A	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.353	p.Q118R	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PAZ,smart_KIND	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	34	0	0	15	12	44.44	-	-	-	G	87607921	A	G	87607921	3	3	228	1	0	0	0	0	1	0	0	0	12863	188	7	5	363	5	PTPN13	4	87607921	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3225748	87607921	103546355	356	14462										
AFF1	0	genome.wustl.edu	37	chr4	87968729	87968729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctcaccaaactgaagatgCcttctcagtcagttgaggtg	10	10	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	87968729	87968729	C	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.1042	p.P348S	0.996	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	426	0	0	213	168	44.09	-	-	-	T	87968729	C	T	87968729	3	4	228	1	0	0	0	0	1	0	0	0	356	739	26	4	1073	4	AFF1	4	87968729	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	360808	87968729	103185547	357	14463										
IBSP	0	genome.wustl.edu	37	chr4	88731767	88731767	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atttttaacaggagacttcaAatgaaggagaaaacaatgaa	8	4	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	88731767	88731767	A	G	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	1	known	missense	c.256	p.N86D	1.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	247	0	0	155	105	40.38	-	-	-	G	88731767	A	G	88731767	3	3	228	1	0	0	0	0	1	0	0	0	7529	14	1	5	274	5	IBSP	4	88731767	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	763038	88731767	102422509	358	14464										
GRID2	0	genome.wustl.edu	37	chr4	94138073	94138073	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaatatggaggtatattataAatgacaggatatttcttcca	8	4	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	94138073	94138073	A	G	SNP	GRID2	ENST00000505687	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	202	0	0	98	77	44	-	-	-	G	94138073	A	G	94138073	1	3	228	0	1	0	0	0	0	0	0	0	6823	29	1	5		5	GRID2	4	94138073	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5406306	94138073	97016203	359	14465										
BMPR1B	0	genome.wustl.edu	37	chr4	96045048	96045048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtccttatcatattattttGttacttccggtaagtttcta	6	7	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	96045048	96045048	G	A	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	missense	c.527	p.C176Y	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	423	0	0	195	146	42.82	-	-	-	A	96045048	G	A	96045048	3	1	228	1	0	0	0	0	1	0	0	0	1475	1377	48	4	451	4	BMPR1B	4	96045048	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1906975	96045048	95109228	360	14466										
PDHA2	0	genome.wustl.edu	37	chr4	96762388	96762388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agccacatttggaagaattaGgccatcacatctacagcagt	8	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	96762388	96762388	G	T	SNP	PDHA2	ENST00000295266	human	ensembl	69_37n	1	known	missense	c.1087	p.G363C	0.085	tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114	295	1	0.34	129	97	42.92	-	-	-	T	96762388	G	T	96762388	3	4	228	1	0	0	0	0	1	0	0	0	11738	1000	35	4	1089	4	PDHA2	4	96762388	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	717340	96762388	94391888	361	14467										
C4orf17	0	genome.wustl.edu	37	chr4	100458875	100458875	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactgattctctggcagaagTtttacagtggctgcttcatg	10	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	100458875	100458875	T	C	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	missense	c.596	p.V199A	0.996	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	179	0	0	119	63	34.62	-	-	-	C	100458875	T	C	100458875	3	2	228	1	0	0	0	0	1	0	0	0	2273	1725	60	5	614	5	C4orf17	4	100458875	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3696487	100458875	90695401	362	14468										
H2AFZ	0	genome.wustl.edu	37	chr4	100870052	100870052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagtgacgaggggtaatacGctttacctttaagtcttttg	10	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	100870052	100870052	G	A	SNP	H2AFZ	ENST00000296417	human	ensembl	69_37n	-1	known	missense	c.241	p.R81C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFZ	HGNC	ENSG00000164032	168	0	0	73	43	37.07	-	-	-	A	100870052	G	A	100870052	3	1	228	1	0	0	0	0	1	0	0	0	6982	1087	38	1	153	1	H2AFZ	4	100870052	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	411177	100870052	90284224	363	14469										
CXXC4	0	genome.wustl.edu	37	chr4	105393506	105393506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaccatcggaatgcttcagcGctgggaacaggtgttctcta	11	10	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	105393506	105393506	G	A	SNP	CXXC4	ENST00000394767	human	ensembl	69_37n	-1	known	silent	c.1077	p.S359	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772	411	0	0	198	144	42.11	-	-	-	A	105393506	G	A	105393506	2	1	228	1	0	0	0	0	0	0	0	1	4129	1078	38	1		1	CXXC4	4	105393506	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4523454	105393506	85760770	364	14470										
SGMS2	0	genome.wustl.edu	37	chr4	108824544	108824544	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatttgttcatcaaagaatgTaagtaatagcccattcccac	5	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	108824544	108824544	T	C	SNP	SGMS2	ENST00000359079	human	ensembl	69_37n	1	known	splice_site	c.727+2	e3+2	1.000	-	-	-	no_errors	SGMS2	HGNC	ENSG00000164023	132	0	0	80	61	43.26	-	-	-	C	108824544	T	C	108824544	5	2	228	1	0	0	0	0	0	0	1	0	14303	1652	57	5	739	5	SGMS2	4	108824544	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3431038	108824544	82329732	365	14471										
COL25A1	0	genome.wustl.edu	37	chr4	109782110	109782110	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgagctccagagtccccTttttctccacgatccccctt	5	19	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	109782110	109782110	T	C	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	silent	c.1215	p.K405	0.993	pfam_Collagen	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	146	1	0.68	96	62	39.24	-	-	-	C	109782110	T	C	109782110	2	2	228	1	0	0	0	0	0	0	0	1	3714	1606	56	5		5	COL25A1	4	109782110	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	957566	109782110	81372166	366	14472										
PITX2	0	genome.wustl.edu	37	chr4	111539778	111539778	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcggcccgaagccattctTgcatagctcggcctgctggt	12	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	111539778	111539778	T	C	SNP	PITX2	ENST00000306732	human	ensembl	69_37n	-1	known	missense	c.478	p.K160E	1.000	superfamily_Homeodomain-like,pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX2	HGNC	ENSG00000164093	127	0	0	84	54	39.13	-	-	-	C	111539778	T	C	111539778	3	2	228	1	0	0	0	0	1	0	0	0	12029	1821	63	5	500	5	PITX2	4	111539778	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1757668	111539778	79614498	367	14473										
ANK2	0	genome.wustl.edu	37	chr4	114195739	114195739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccactgcacatctctgcccgGgagggccaggtggatgtggc	15	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	114195739	114195739	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.1617	p.R539	0.984	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	83	0	0	51	37	42.05	-	-	-	A	114195739	G	A	114195739	2	1	228	1	0	0	0	0	0	0	0	1	621	1219	43	4		4	ANK2	4	114195739	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2655961	114195739	76958537	368	14474										
ANK2	0	genome.wustl.edu	37	chr4	114275342	114275342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaactgagaaacactcaccTgtgtcaccctctgcaaaaac	5	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	114275342	114275342	T	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.5568	p.P1856	0.959	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	613	1	0.16	369	198	34.8	-	-	-	C	114275342	T	C	114275342	2	2	228	1	0	0	0	0	0	0	0	1	621	1567	55	5		5	ANK2	4	114275342	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	79603	114275342	76878934	369	14475										
NDST4	0	genome.wustl.edu	37	chr4	115767003	115767003	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taccaagagtatgccctgtcTgaggggtcaatgaggatggt	14	7	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	115767003	115767003	T	C	SNP	NDST4	ENST00000264363	human	ensembl	69_37n	-1	known	silent	c.2091	p.S697	0.524	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST4	HGNC	ENSG00000138653	91	0	0	35	22	38.6	-	-	-	C	115767003	T	C	115767003	2	2	228	1	0	0	0	0	0	0	0	1	10330	1567	55	5		5	NDST4	4	115767003	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1491661	115767003	75387273	370	14476										
TRPC3	0	genome.wustl.edu	37	chr4	122853728	122853728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtgatgtccggcgagaagcGcgtgccgtcctcgtcgtaag	16	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	122853728	122853728	G	A	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	missense	c.685	p.R229C	1.000	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	50	0	0	36	32	47.06	-	-	-	A	122853728	G	A	122853728	3	1	228	1	0	0	0	0	1	0	0	0	16675	1087	38	1	2124	1	TRPC3	4	122853728	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7086725	122853728	68300548	371	14477										
FAT4	0	genome.wustl.edu	37	chr4	126241181	126241181	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacatgaaggatataaatgaTaatgctcccaaatttttaaa	5	5	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	126241181	126241181	T	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.3615	p.D1205	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	189	0	0	70	57	44.53	-	-	-	C	126241181	T	C	126241181	2	2	228	1	0	0	0	0	0	0	0	1	5738	1403	49	5		5	FAT4	4	126241181	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3387453	126241181	64913095	372	14478										
PCDH18	0	genome.wustl.edu	37	chr4	138452690	138452690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcagtcctggtccgaacctCgatattaaaaaaatcattgg	7	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	138452690	138452690	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.553	p.E185K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	157	0	0	75	68	47.55	-	-	-	T	138452690	C	T	138452690	3	4	228	1	0	0	0	0	1	0	0	0	11586	893	31	1	2870	1	PCDH18	4	138452690	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	12211509	138452690	52701586	373	14479										
ZNF330	0	genome.wustl.edu	37	chr4	142143531	142143532	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaaataggggaaaatgcctINSaaaaaaaagactggtgcgag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	142143531	142143532	-	A	INS	ZNF330	ENST00000262990	human	ensembl	69_37n	1	known	frame_shift_ins	c.6_7	p.T5fs	1.000:1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445	82	0	0	54	24	30.77	-	-	-	A	142143532	-	A	142143531	7	5	228	1	0	1	1	0	0	0	0	0	17944	1509	53	0	8	0	ZNF330	4	142143531	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	3690841	142143531	49010745	374	14480										
OTUD4	0	genome.wustl.edu	37	chr4	146095895	146095895	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcgagactgagagtgcaatAcctaaaaagaaaaggcaaca	11	7	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	146095895	146095895	A	G	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.161	p.V54A	0.993	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	82	0	0	52	29	35.8	-	-	-	G	146095895	A	G	146095895	3	3	228	1	0	0	0	0	1	0	0	0	11387	405	14	5		5	OTUD4	4	146095895	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3952364	146095895	45058381	375	14481										
TMEM184C	0	genome.wustl.edu	37	chr4	148554992	148554992	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcatataaaccatatgtccAagaagcagaagagggctcat	8	9	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	148554992	148554992	A	G	SNP	TMEM184C	ENST00000296582	human	ensembl	69_37n	1	known	missense	c.956	p.Q319R	1.000	NULL	pfam_Ost-alpha	-	no_errors	TMEM184C	HGNC	ENSG00000164168	423	0	0	242	132	35.2	-	-	-	G	148554992	A	G	148554992	3	3	228	1	0	0	0	0	1	0	0	0	16201	130	5	5	990	5	TMEM184C	4	148554992	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2459097	148554992	42599284	376	14482										
LRBA	0	genome.wustl.edu	37	chr4	151727435	151727435	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacttacttgttccttctaTaagcagttcttgtccatggc	6	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	151727435	151727435	T	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.5506	p.I1836L	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	272	0	0	153	95	38.31	-	-	-	A	151727435	T	A	151727435	3	1	228	1	0	0	0	0	1	0	0	0	8997	1406	49	5	3189	5	LRBA	4	151727435	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3172443	151727435	39426841	377	14483										
FHDC1	0	genome.wustl.edu	37	chr4	153896935	153896935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacatccagcccccctggggAggctcctgcccccgtctctg	10	19	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	153896935	153896935	A	G	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	missense	c.2492	p.E831G	0.135	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	58	0	0	28	26	48.15	-	-	-	G	153896935	A	G	153896935	3	3	228	1	0	0	0	0	1	0	0	0	5922	304	11	5	2534	5	FHDC1	4	153896935	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2169500	153896935	37257341	378	14484										
TLR2	0	genome.wustl.edu	37	chr4	154624828	154624828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgattaaaaagtttacatttAgaaatgtgaaaatcaccgat	6	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	154624828	154624828	A	G	SNP	TLR2	ENST00000260010	human	ensembl	69_37n	1	known	missense	c.769	p.R257G	0.141	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	151	0	0	55	56	50.45	-	-	-	G	154624828	A	G	154624828	3	3	228	1	0	0	0	0	1	0	0	0	16046	412	15	5	771	5	TLR2	4	154624828	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	727893	154624828	36529448	379	14485										
TLR2	0	genome.wustl.edu	37	chr4	154625966	154625966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagcccaggaaagctcccaGcaggaacatctgctatgatg	11	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	154625966	154625966	G	A	SNP	TLR2	ENST00000260010	human	ensembl	69_37n	1	known	missense	c.1907	p.S636N	0.000	pirsf_Toll-like_receptor,superfamily_TIR_dom,prints_IL1_rcpt_1	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	131	0	0	82	45	35.43	-	-	-	A	154625966	G	A	154625966	3	1	228	1	0	0	0	0	1	0	0	0	16046	971	34	4	1909	4	TLR2	4	154625966	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1138	154625966	36528310	380	14486										
DCHS2	0	genome.wustl.edu	37	chr4	155254014	155254014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtacctaagaggcgaggctgCacgctgggggccaagtgggt	18	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	155254014	155254014	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.1849	p.A617T	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	58	0	0	38	22	36.67	-	-	-	T	155254014	C	T	155254014	3	4	228	1	0	0	0	0	1	0	0	0	4319	710	25	4	7065	4	DCHS2	4	155254014	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	628048	155254014	35900262	381	14487										
TKTL2	0	genome.wustl.edu	37	chr4	164394543	164394544	+	Frame_Shift_Ins	INS	-	-	G													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacgtcaacaaacggcaatcINSggggggtagggtgtctctcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	164394543	164394544	-	G	INS	TKTL2	ENST00000280605	human	ensembl	69_37n	-1	known	frame_shift_ins	c.344_343	p.R115fs	0.447:0.001	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005	71	0	0	48	16	25	-	-	-	G	164394544	-	G	164394543	7	5	228	1	0	1	1	0	0	0	0	0	16031	884	31	0	1540	0	TKTL2	4	164394543	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	9140529	164394543	26759733	382	14488										
HAND2	0	genome.wustl.edu	37	chr4	174450057	174450057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtttggtgtcggcgggtacGttggggatgcactcgcgcag	18	8	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	174450057	174450057	G	A	SNP	HAND2	ENST00000503024	human	ensembl	69_37n	-1	known	missense	c.7	p.R3C	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	HAND2	HGNC	ENSG00000164107	32	0	0	26	27	50.94	-	-	-	A	174450057	G	A	174450057	3	1	228	1	0	0	0	0	1	0	0	0	7001	1136	40	1	277	1	HAND2	4	174450057	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	10055514	174450057	16704219	383	14489										
WDR17	0	genome.wustl.edu	37	chr4	177052721	177052721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttagtttcagtccaatctccAaccaaaaatcattatacatc	2	11	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	177052721	177052721	A	G	SNP	WDR17	ENST00000505894	human	ensembl	69_37n	1	novel	missense	c.248	p.Q83R	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon	WDR17	HGNC	ENSG00000150627	374	0	0	299	40	11.8	-	-	-	G	177052721	A	G	177052721	3	3	228	1	0	0	0	0	1	0	0	0	17374	117	5	5	1028	5	WDR17	4	177052721	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2602664	177052721	14101555	384	14490										
FAT1	0	genome.wustl.edu	37	chr4	187630578	187630578	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatccagcacctgcaccctgAcctttgttcgcgcctccaca	6	18	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	187630578	187630578	A	G	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.404	p.V135A	0.997	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	225	2	0.87	117	90	43.27	-	-	-	G	187630578	A	G	187630578	3	3	228	1	0	0	0	0	1	0	0	0	5735	275	10	5	13466	5	FAT1	4	187630578	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	10577857	187630578	3523698	385	14491										
TRIML2	0	genome.wustl.edu	37	chr4	189012771	189012771	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaggaagagccttttcagaGgggggaagacccagagagtc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	4	189012771	189012771	G	-	DEL	TRIML2	ENST00000512729	human	ensembl	69_37n	-1	known	frame_shift_del	c.920	p.P307fs	0.017	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	TRIML2	HGNC	ENSG00000179046	299	0	0	230	151	39.43	-	-	-	-	189012771	G	-	189012771	7	5	228	1	0	1	0	1	0	0	0	0	16647	1000	35	0	247	0	TRIML2	4	189012771	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	1382193	189012771	2141505	386	14492										
EXOC3	0	genome.wustl.edu	37	chr5	454017	454017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccaaaaacctgatggttcaGtgctttcctccccactatga	7	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	454017	454017	G	A	SNP	EXOC3	ENST00000503889	human	ensembl	69_37n	1	known	missense	c.506	p.S169N	1.000	pfam_Sec6	pfam_Sec6	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EXOC3	HGNC	ENSG00000180104	72	0	0	43	37	46.25	-	-	-	A	454017	G	A	454017	3	1	228	1	0	0	0	0	1	0	0	0	5339	1020	36	4	907	4	EXOC3	5	454017	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		454017	180461243	387	14493										
IRX1	0	genome.wustl.edu	37	chr5	3600794	3600797	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttccagccggtacgcgacAagtgagtgctgtttgctttt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	3600794	3600797	AAGT	-	DEL	IRX1	ENST00000302006	human	ensembl	69_37n	1	known	frame_shift_del	c.1384_1385	p.N462fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX1	HGNC	ENSG00000170549	16	0	0	13	6	27.27	-	-	-	-	3600797	AAGT	-	3600794	7	5	228	1	0	1	0	1	0	0	0	0	7897	144	5	0	1394	0	IRX1	5	3600794	Frame_Shift_Del	DEL	AAGT	TCGA-A8-A09Z-01A-11W-A019-09	3146777	3600794	177314466	388	14494										
SRD5A1	0	genome.wustl.edu	37	chr5	6651954	6651954	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcctgtttcttgtttcctaaGgtgcttaatttacccatttc	6	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	6651954	6651954	G	T	SNP	SRD5A1	ENST00000274192	human	ensembl	69_37n	1	known	splice_site	c.294-1	e2-1	0.997	-	-	-	no_errors	SRD5A1	HGNC	ENSG00000145545	92	0	0	33	38	53.52	-	-	-	T	6651954	G	T	6651954	5	4	228	1	0	0	0	0	0	0	1	0	15229	1014	35	4	299	4	SRD5A1	5	6651954	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3051160	6651954	174263306	389	14495										
ADCY2	0	genome.wustl.edu	37	chr5	7817095	7817095	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gacttcaaattgcgagtgggTacgttctgcaaaagaggtct	12	7	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	7817095	7817095	T	C	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	splice_site	c.2998+2	e23+2	1.000	-	-	-	no_errors	ADCY2	HGNC	ENSG00000078295	57	0	0	34	18	32.73	-	-	-	C	7817095	T	C	7817095	5	2	228	1	0	0	0	0	0	0	1	0	294	1652	57	5	3090	5	ADCY2	5	7817095	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1165141	7817095	173098165	390	14496										
TRIO	0	genome.wustl.edu	37	chr5	14358332	14358332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agaaggagctgctggacgacGtgtatgccgagtcggtggag	18	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	14358332	14358332	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.2092	p.V698M	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	50	0	0	34	24	41.38	-	-	-	A	14358332	G	A	14358332	3	1	228	1	0	0	0	0	1	0	0	0	16648	1145	40	1	2138	1	TRIO	5	14358332	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6541237	14358332	166556928	391	14497										
SUB1	0	genome.wustl.edu	37	chr5	32591766	32591766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcttctaaacagagcagcaGcagcagagatgataacatgt	9	8	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	32591766	32591766	G	A	SNP	SUB1	ENST00000265073	human	ensembl	69_37n	1	known	missense	c.170	p.S57N	1.000	pfam_PC4	pfam_PC4,superfamily_ssDNA-bd_transcriptional_reg	-	no_errors	SUB1	HGNC	ENSG00000113387	180	0	0	103	72	41.14	-	-	-	A	32591766	G	A	32591766	3	1	228	1	0	0	0	0	1	0	0	0	15453	971	34	4	176	4	SUB1	5	32591766	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	18233434	32591766	148323494	392	14498										
C6	0	genome.wustl.edu	37	chr5	41161878	41161878	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccagaccagagctcccttTctcccatgccaaagctgctc	6	18	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	41161878	41161878	T	C	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.1375	p.K459E	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	268	0	0	145	102	41.3	-	-	-	C	41161878	T	C	41161878	3	2	228	1	0	0	0	0	1	0	0	0	2336	1792	62	5	1465	5	C6	5	41161878	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	8570112	41161878	139753382	393	14499										
C6	0	genome.wustl.edu	37	chr5	41172667	41172667	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaacaggagtcccgtgagtgCccatcatctcccctttcagc	9	15	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	41172667	41172667	C	T	SNP	C6	ENST00000473450	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6	HGNC	ENSG00000039537	18	0	0	10	4	28.57	-	-	-	T	41172667	C	T	41172667	1	4	228	0	1	0	0	0	0	0	0	0	2336	754	26	4		4	C6	5	41172667	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	10789	41172667	139742593	394	14500										
PLCXD3	0	genome.wustl.edu	37	chr5	41382163	41382163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cactggactatggtagaagaCcagcacttgatagtccttct	9	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	41382163	41382163	C	G	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	missense	c.577	p.V193L	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	200	0	0	122	101	45.29	-	-	-	G	41382163	C	G	41382163	3	3	228	1	0	0	0	0	1	0	0	0	12117	507	18	4	396	4	PLCXD3	5	41382163	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	209496	41382163	139533097	395	14501										
ZNF131	0	genome.wustl.edu	37	chr5	43161931	43161931	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accttgaagaaggtggagtcAgtaagaagcaaagaactggg	14	5	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	43161931	43161931	A	G	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.952	p.S318G	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	85	0	0	53	33	38.37	-	-	-	G	43161931	A	G	43161931	3	3	228	1	0	0	0	0	1	0	0	0	17817	188	7	5	868	5	ZNF131	5	43161931	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1779768	43161931	137753329	396	14502										
NNT	0	genome.wustl.edu	37	chr5	43619173	43619173	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcagcaaatcattttggacgTttttttactggtcagatcac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	43619173	43619173	T	-	DEL	NNT	ENST00000264663	human	ensembl	69_37n	1	known	frame_shift_del	c.639	p.F215fs	0.010	pfam_AlaDH/PNT_NAD(H)-bd,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	45	0	0	35	19	35.19	-	-	-	-	43619173	T	-	43619173	7	5	228	1	0	1	0	1	0	0	0	0	10582	1712	60	0	653	0	NNT	5	43619173	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	457242	43619173	137296087	397	14503										
GPX8	0	genome.wustl.edu	37	chr5	54460112	54460113	+	RNA	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtttggtctcattttaaacaINSttttttttttggagacagtg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	54460112	54460113	-	T	INS	GPX8	ENST00000506123	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GPX8	HGNC	ENSG00000164294	34	0	0	30	18	37.5	-	-	-	T	54460113	-	T	54460112	6	5	228	0	1	1	1	0	0	0	0	0	6797	232	8	0		0	GPX8	5	54460112	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	10840939	54460112	126455148	398	14504										
PDE4D	0	genome.wustl.edu	37	chr5	58271602	58271602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttatccggtccgtccactggCggtacagctggagaggcttt	13	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	58271602	58271602	C	T	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.1895	p.R632H	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	147	0	0	62	33	34.74	-	-	-	T	58271602	C	T	58271602	3	4	228	1	0	0	0	0	1	0	0	0	11715	768	27	1	542	1	PDE4D	5	58271602	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3811490	58271602	122643658	399	14505										
KIF2A	0	genome.wustl.edu	37	chr5	61676976	61676976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggttagaagatgaaaaggCcctcttagagatgactgaag	13	5	1	6			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	61676976	61676976	C	T	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.2045	p.A682V	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	244	0	0	114	90	44.12	-	-	-	T	61676976	C	T	61676976	3	4	228	1	0	0	0	0	1	0	0	0	8349	739	26	4	2123	4	KIF2A	5	61676976	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3405374	61676976	119238284	400	14506										
RGS7BP	0	genome.wustl.edu	37	chr5	63904998	63904998	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccatcacagatgacagcagCcttctgaatctaactcccta	5	15	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	63904998	63904998	C	T	SNP	RGS7BP	ENST00000334025	human	ensembl	69_37n	1	known	silent	c.693	p.S231	1.000	NULL	NULL	-	no_errors	RGS7BP	HGNC	ENSG00000186479	241	0	0	129	88	40.55	-	-	-	T	63904998	C	T	63904998	2	4	228	1	0	0	0	0	0	0	0	1	13395	738	26	4		4	RGS7BP	5	63904998	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2228022	63904998	117010262	401	14507										
CD180	0	genome.wustl.edu	37	chr5	66480169	66480170	+	Frame_Shift_Ins	INS	-	-	G													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccgtgctgggaagtctttINSggggaacttaatggaggaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	66480169	66480170	-	G	INS	CD180	ENST00000256447	human	ensembl	69_37n	-1	known	frame_shift_ins	c.502_501	p.K167fs	0.000:0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061	348	0	0	271	149	35.48	-	-	-	G	66480170	-	G	66480169	7	5	228	1	0	1	1	0	0	0	0	0	3001	1821	63	0	1487	0	CD180	5	66480169	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	2575171	66480169	114435091	402	14508										
CARTPT	0	genome.wustl.edu	37	chr5	71015636	71015636	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggggctccttataactagggCtggaagtgcgcacctgggct	15	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	71015636	71015636	C	T	SNP	CARTPT	ENST00000513096	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.299	-	-	-	no_errors	CARTPT	HGNC	ENSG00000164326	57	0	0	38	22	36.67	-	-	-	T	71015636	C	T	71015636	1	4	228	0	1	0	0	0	0	0	0	0	2684	812	28	4		4	CARTPT	5	71015636	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4535467	71015636	109899624	403	14509										
GFM2	0	genome.wustl.edu	37	chr5	74018322	74018322	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggacagggctgagataatctCtagctactgtaacctcaaga	10	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	74018322	74018322	C	A	SNP	GFM2	ENST00000296805	human	ensembl	69_37n	-1	known	missense	c.2093	p.R698I	0.679	pfam_Transl_elong_EFG/EF2_C,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347	452	1	0.22	249	156	38.52	-	-	-	A	74018322	C	A	74018322	3	1	228	1	0	0	0	0	1	0	0	0	6394	913	32	2	254	2	GFM2	5	74018322	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3002686	74018322	106896938	404	14510										
COL4A3BP	0	genome.wustl.edu	37	chr5	74698843	74698843	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagagcagcttcaacagcaTcaaagaactcttcttcatta	5	11	5	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	74698843	74698843	T	C	SNP	COL4A3BP	ENST00000380494	human	ensembl	69_37n	-1	known	missense	c.1355	p.D452G	1.000	NULL	pfam_START_lipid-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd	-	no_errors	COL4A3BP	HGNC	ENSG00000113163	194	0	0	79	61	43.57	-	-	-	C	74698843	T	C	74698843	3	2	228	1	0	0	0	0	1	0	0	0	3722	1435	50	5	939	5	COL4A3BP	5	74698843	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	680521	74698843	106216417	405	14511										
CMYA5	0	genome.wustl.edu	37	chr5	79033022	79033022	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagaaacaccgccatatttgCtgtcacctgtaaaaccacaa	5	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	79033022	79033022	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.8434	p.L2812	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	277	0	0	129	84	39.44	-	-	-	T	79033022	C	T	79033022	2	4	228	1	0	0	0	0	0	0	0	1	3620	796	28	4		4	CMYA5	5	79033022	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4334179	79033022	101882238	406	14512										
CMYA5	0	genome.wustl.edu	37	chr5	79086813	79086813	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaccagatttctcttgttgAgagaaacagctcatcctgct	8	10	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	79086813	79086813	A	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.11710	p.R3904G	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	49	0	0	25	8	24.24	-	-	-	G	79086813	A	G	79086813	3	3	228	1	0	0	0	0	1	0	0	0	3620	296	11	5	11752	5	CMYA5	5	79086813	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	53791	79086813	101828447	407	14513										
SSBP2	0	genome.wustl.edu	37	chr5	80785093	80785093	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttaggtatcctcaatgggggCcttggacctccagggtaccg	13	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	80785093	80785093	C	G	SNP	SSBP2	ENST00000320672	human	ensembl	69_37n	-1	known	missense	c.408	p.R136S	1.000	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP2	HGNC	ENSG00000145687	61	0	0	21	22	51.16	-	-	-	G	80785093	C	G	80785093	3	3	228	1	0	0	0	0	1	0	0	0	15271	738	26	4	725	4	SSBP2	5	80785093	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1698280	80785093	100130167	408	14514										
VCAN	0	genome.wustl.edu	37	chr5	82834287	82834287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggggttcaggaagggctgaCcactctcccacgtagtcctg	13	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	82834287	82834287	C	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.5465	p.T1822I	0.281	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	274	0	0	158	88	35.77	-	-	-	T	82834287	C	T	82834287	3	4	228	1	0	0	0	0	1	0	0	0	17235	507	18	4	5491	4	VCAN	5	82834287	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2049194	82834287	98080973	409	14515										
EDIL3	0	genome.wustl.edu	37	chr5	83360656	83360656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttgttatcaatgtttccaCgaaacacctgtgtaaaaaca	6	8	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	83360656	83360656	C	T	SNP	EDIL3	ENST00000296591	human	ensembl	69_37n	-1	known	missense	c.815	p.R272H	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176	233	0	0	85	67	44.08	-	-	-	T	83360656	C	T	83360656	3	4	228	1	0	0	0	0	1	0	0	0	4950	536	19	1	643	1	EDIL3	5	83360656	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	526369	83360656	97554604	410	14516										
GPR98	0	genome.wustl.edu	37	chr5	89992953	89992953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acagcttccagatctgtcatAggtcatgaaggtgggttcct	11	9	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	89992953	89992953	A	G	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.8145	p.I2715M	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	233	0	0	134	78	36.79	-	-	-	G	89992953	A	G	89992953	3	3	228	1	0	0	0	0	1	0	0	0	6772	410	15	5	8279	5	GPR98	5	89992953	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	6632297	89992953	90922307	411	14517										
GPR98	0	genome.wustl.edu	37	chr5	90106266	90106267	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgttcagaatggggaactgINSttttttcaaaaattccaaac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	90106266	90106267	-	T	INS	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	frame_shift_ins	c.15189_15190	p.Q5065fs	0.421:0.421	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	138	0	0	54	38	41.3	-	-	-	T	90106267	-	T	90106266	7	5	228	1	0	1	1	0	0	0	0	0	6772	1364	48	0	15483	0	GPR98	5	90106266	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	113313	90106266	90808994	412	14518										
CHD1	0	genome.wustl.edu	37	chr5	98206408	98206409	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accgcaccagaaagagcttcINStttttttgcaagatctctac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	98206408	98206409	-	T	INS	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3961_3960	p.E1320fs	1.000:1.000	superfamily_Homeodomain-like	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	147	0	0	92	54	36.99	-	-	-	T	98206409	-	T	98206408	7	5	228	1	0	1	1	0	0	0	0	0	3352	922	32	0	1203	0	CHD1	5	98206408	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	8100142	98206408	82708852	413	14519										
SLCO6A1	0	genome.wustl.edu	37	chr5	101748805	101748805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attgaagatgagcatctacaTttttcattgcaaggagccgt	9	7	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	101748805	101748805	T	A	SNP	SLCO6A1	ENST00000379807	human	ensembl	69_37n	-1	known	missense	c.1515	p.K505N	0.015	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	92	0	0	101	39	27.66	-	-	-	A	101748805	T	A	101748805	3	1	228	1	0	0	0	0	1	0	0	0	14821	1490	52	5	664	5	SLCO6A1	5	101748805	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3542397	101748805	79166455	414	14520										
SLCO6A1	0	genome.wustl.edu	37	chr5	101794186	101794186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacgtttcctagcttttatcCgtgttgaacctatatataaa	5	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	101794186	101794186	C	T	SNP	SLCO6A1	ENST00000379807	human	ensembl	69_37n	-1	known	missense	c.1031	p.R344Q	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	278	0	0	269	110	29.02	-	-	-	T	101794186	C	T	101794186	3	4	228	1	0	0	0	0	1	0	0	0	14821	652	23	1	1160	1	SLCO6A1	5	101794186	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	45381	101794186	79121074	415	14521										
MAN2A1	0	genome.wustl.edu	37	chr5	109065106	109065106	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtatatttttaataacatggTcctaaagctgaaagaagact	7	5	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	109065106	109065106	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	missense	c.599	p.V200A	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	312	0	0	210	87	29.29	-	-	-	C	109065106	T	C	109065106	3	2	228	1	0	0	0	0	1	0	0	0	9285	1667	58	5	613	5	MAN2A1	5	109065106	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7270920	109065106	71850154	416	14522										
DMXL1	0	genome.wustl.edu	37	chr5	118502316	118502316	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttttcctttatagagctgAaaaaaacaccaggatgacac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	118502316	118502316	A	-	DEL	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	frame_shift_del	c.4976	p.N1661fs	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	182	0	0	141	59	29.35	-	-	-	-	118502316	A	-	118502316	7	5	228	1	0	1	0	1	0	0	0	0	4630	246	9	0	5062	0	DMXL1	5	118502316	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	9437210	118502316	62412944	417	14523										
FBN2	0	genome.wustl.edu	37	chr5	127863564	127863564	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taataaatcaatgtcccttaCgttgtccacaataagttcca	4	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	127863564	127863564	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	splice_site	c.532+1	e4+1	1.000	-	-	-	no_errors	FBN2	HGNC	ENSG00000138829	73	0	0	43	62	59.05	-	-	-	T	127863564	C	T	127863564	5	4	228	1	0	0	0	0	0	0	1	0	5749	550	19	1	8453	1	FBN2	5	127863564	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	9361248	127863564	53051696	418	14524										
P4HA2	0	genome.wustl.edu	37	chr5	131543571	131543571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaaagcctcttctgtctacGgggtgtctggaaagcacaga	12	9	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	131543571	131543571	G	A	SNP	P4HA2	ENST00000166534	human	ensembl	69_37n	-1	known	missense	c.910	p.R304C	0.945	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682	52	0	0	51	7	12.07	-	-	-	A	131543571	G	A	131543571	3	1	228	1	0	0	0	0	1	0	0	0	11430	1116	39	1	793	1	P4HA2	5	131543571	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3680007	131543571	49371689	419	14525										
SEPT8	0	genome.wustl.edu	37	chr5	132101194	132101194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acccacatggccgcccagggAgaggctccggggctctggct	15	15	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	132101194	132101194	A	G	SNP	SEPT8	ENST00000378719	human	ensembl	69_37n	-1	known	missense	c.58	p.S20P	0.367	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402	180	1	0.55	239	85	26.15	-	-	-	G	132101194	A	G	132101194	3	3	228	1	0	0	0	0	1	0	0	0	14158	304	11	5	1484	5	SEPT8	5	132101194	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	557623	132101194	48814066	420	14526										
VDAC1	0	genome.wustl.edu	37	chr5	133311613	133311613	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttggctgctattccgaagcgCgtgttactgtttcctgctgt	11	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	133311613	133311613	C	T	SNP	VDAC1	ENST00000265333	human	ensembl	69_37n	-1	known	silent	c.651	p.T217	0.986	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC1	HGNC	ENSG00000213585	163	0	0	235	85	26.56	-	-	-	T	133311613	C	T	133311613	2	4	228	1	0	0	0	0	0	0	0	1	17243	755	27	1		1	VDAC1	5	133311613	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1210419	133311613	47603647	421	14527										
SEC24A	0	genome.wustl.edu	37	chr5	134029512	134029512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcactgcaggctgcctttaaGctgatgtctccaactggtgg	12	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	134029512	134029512	G	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.1875	p.K625N	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	94	0	0	109	41	27.33	-	-	-	T	134029512	G	T	134029512	3	4	228	1	0	0	0	0	1	0	0	0	14082	962	34	4	1925	4	SEC24A	5	134029512	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	717899	134029512	46885748	422	14528										
KLHL3	0	genome.wustl.edu	37	chr5	137027977	137027977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtccggctcccccttacctgCgtaggcattggcctgctgca	11	16	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	137027977	137027977	C	T	SNP	KLHL3	ENST00000309755	human	ensembl	69_37n	-1	known	missense	c.523	p.A175T	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021	74	0	0	80	30	27.03	-	-	-	T	137027977	C	T	137027977	3	4	228	1	0	0	0	0	1	0	0	0	8436	768	27	1	1284	1	KLHL3	5	137027977	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2998465	137027977	43887283	423	14529										
ANKHD1	0	genome.wustl.edu	37	chr5	139889224	139889224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atttattggtttaaacagacGggtcttacccccttgatgga	9	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	139889224	139889224	G	T	SNP	ANKHD1	ENST00000246149	human	ensembl	69_37n	1	novel	missense	c.1445	p.R482L	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKHD1	HGNC	ENSG00000131503	145	0	0	139	67	32.52	-	-	-	T	139889224	G	T	139889224	3	4	228	1	0	0	0	0	1	0	0	0	628	1103	39	3	3956	3	ANKHD1	5	139889224	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2861247	139889224	41026036	424	14530										
PCDHA3	0	genome.wustl.edu	37	chr5	140181027	140181027	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaggtaaatctgcagaatgGcattttgtttgtgaattctc	11	5	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140181027	140181027	G	C	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.245	p.G82A	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	109	0	0	80	74	48.05	-	-	-	C	140181027	G	C	140181027	3	2	228	1	0	0	0	0	1	0	0	0	11598	1203	42	4	247	4	PCDHA3	5	140181027	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	291803	140181027	40734233	425	14531										
PCDHA11	0	genome.wustl.edu	37	chr5	140250877	140250877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcaacgcccactgagggcgCgtgcgcgccggggaagccca	17	15	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140250877	140250877	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.2189	p.A730V	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	12	0	0	12	5	29.41	-	-	-	T	140250877	C	T	140250877	3	4	228	1	0	0	0	0	1	0	0	0	11594	768	27	1	2191	1	PCDHA11	5	140250877	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	69850	140250877	40664383	426	14532										
PCDHA12	0	genome.wustl.edu	37	chr5	140256186	140256186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgattagcgtgtcggatCgtgactctggagccaatgga	13	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140256186	140256186	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	missense	c.1129	p.R377C	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	111	0	0	66	31	31.63	-	-	-	T	140256186	C	T	140256186	3	4	228	1	0	0	0	0	1	0	0	0	11595	884	31	1	1131	1	PCDHA12	5	140256186	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5309	140256186	40659074	427	14533										
PCDHA12	0	genome.wustl.edu	37	chr5	140256671	140256671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagttccaggtgagcgcgcgCgacgccggcgtgccgcctct	15	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140256671	140256671	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.1614	p.R538	0.984	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	31	0	0	38	13	25.49	-	-	-	T	140256671	C	T	140256671	2	4	228	1	0	0	0	0	0	0	0	1	11595	755	27	1		1	PCDHA12	5	140256671	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	485	140256671	40658589	428	14534										
PCDHB3	0	genome.wustl.edu	37	chr5	140480423	140480423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggaactggccgcgagggggGcccaagttgtgtccaaaggg	18	9	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140480423	140480423	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	missense	c.190	p.A64T	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	114	0	0	89	43	32.58	-	-	-	A	140480423	G	A	140480423	3	1	228	1	0	0	0	0	1	0	0	0	11616	1203	42	4	192	4	PCDHB3	5	140480423	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	223752	140480423	40434837	429	14535										
PCDHB3	0	genome.wustl.edu	37	chr5	140481777	140481777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggacaacggccacctgtttgCcctcaggtcgctggactacg	12	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140481777	140481777	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	missense	c.1544	p.A515V	0.121	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	134	0	0	130	68	34.34	-	-	-	T	140481777	C	T	140481777	3	4	228	1	0	0	0	0	1	0	0	0	11616	739	26	4	1546	4	PCDHB3	5	140481777	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1354	140481777	40433483	430	14536										
PCDHB7	0	genome.wustl.edu	37	chr5	140552718	140552718	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgtgtggccccagagagcCctgtgtgctgcctttccagt	12	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140552718	140552718	C	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.302	p.P101H	0.983	pfam_Cadherin_N	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	182	0	0	162	63	27.88	-	-	-	A	140552718	C	A	140552718	3	1	228	1	0	0	0	0	1	0	0	0	11620	623	22	4	304	4	PCDHB7	5	140552718	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	70941	140552718	40362542	431	14537										
PCDHGA6	0	genome.wustl.edu	37	chr5	140754847	140754847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaattggaaaaatcagttggCaattattatcgattagtgac	9	4	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140754847	140754847	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	silent	c.1197	p.G399	0.070	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	146	0	0	133	51	27.57	-	-	-	T	140754847	C	T	140754847	2	4	228	1	0	0	0	0	0	0	0	1	11631	697	25	4		4	PCDHGA6	5	140754847	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	202129	140754847	40160413	432	14538										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789346	140789346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttgatcacgagcagctgcGcgccttcgcgctcacgctgc	11	16	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	140789346	140789346	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.1577	p.R526H	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	16	0	0	12	26	68.42	-	-	-	A	140789346	G	A	140789346	3	1	228	1	0	0	0	0	1	0	0	0	11640	1087	38	1	1579	1	PCDHGB6	5	140789346	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	34499	140789346	40125914	433	14539										
FCHSD1	0	genome.wustl.edu	37	chr5	141019316	141019316	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctctttcctcctggactgGgagctccggcagaagtcagg	14	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	141019316	141019316	G	T	SNP	FCHSD1	ENST00000520465	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948	41	0	0	29	9	23.68	-	-	-	T	141019316	G	T	141019316	1	4	228	0	1	0	0	0	0	0	0	0	5835	1247	43	4		4	FCHSD1	5	141019316	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	229970	141019316	39895944	434	14540										
PDE6A	0	genome.wustl.edu	37	chr5	149279032	149279032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcttccttcttgttcacaAtcggcattgaaagcacattt	5	10	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	149279032	149279032	A	G	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	missense	c.1169	p.I390T	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	456	0	0	214	135	38.68	-	-	-	G	149279032	A	G	149279032	3	3	228	1	0	0	0	0	1	0	0	0	11718	101	4	5	1469	5	PDE6A	5	149279032	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	8259716	149279032	31636228	435	14541										
ZNF300	0	genome.wustl.edu	37	chr5	150278080	150278080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgctgccactcctcctgggTgaaatccacagccacatcct	7	16	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	150278080	150278080	T	C	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.100	p.T34A	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	324	1	0.31	167	109	39.49	-	-	-	C	150278080	T	C	150278080	3	2	228	1	0	0	0	0	1	0	0	0	17927	1696	59	5	1774	5	ZNF300	5	150278080	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	999048	150278080	30637180	436	14542										
FAM71B	0	genome.wustl.edu	37	chr5	156589956	156589956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggtgatgagaacttttcctActgggatgtctgtccttctt	10	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	156589956	156589956	A	G	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	silent	c.1320	p.S440	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	159	0	0	105	90	45.92	-	-	-	G	156589956	A	G	156589956	2	3	228	1	0	0	0	0	0	0	0	1	5653	388	14	5		5	FAM71B	5	156589956	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	6311876	156589956	24325304	437	14543										
CYFIP2	0	genome.wustl.edu	37	chr5	156786030	156786030	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcctctcaacattgcctaCagccacatctacagctccta	4	17	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	156786030	156786030	C	T	SNP	CYFIP2	ENST00000442283	human	ensembl	69_37n	1	known	nonsense	c.544	p.Q182*	1.000	pfam_Cytoplasmic_FMR1-int,superfamily_Chemokine_IL8-like_dom	pfam_Cytoplasmic_FMR1-int,superfamily_Chemokine_IL8-like_dom	-	no_errors	CYFIP2	HGNC	ENSG00000055163	284	0	0	203	90	30.72	-	-	-	T	156786030	C	T	156786030	4	4	228	1	0	0	0	0	0	1	0	0	4169	489	17	4	2781	4	CYFIP2	5	156786030	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	196074	156786030	24129230	438	14544										
C5orf54	0	genome.wustl.edu	37	chr5	159821756	159821756	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcggaattttctcctagcaTagaggaggcaccatcagtac	9	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	159821756	159821756	T	C	SNP	C5orf54	ENST00000408953	human	ensembl	69_37n	-1	known	missense	c.742	p.M248V	0.994	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	C5orf54	HGNC	ENSG00000221886	271	0	0	91	85	48.3	-	-	-	C	159821756	T	C	159821756	3	2	228	1	0	0	0	0	1	0	0	0	2331	1406	49	5	1046	5	C5orf54	5	159821756	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3035726	159821756	21093504	439	14545										
ATP10B	0	genome.wustl.edu	37	chr5	160114946	160114946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttgttggggaacacgacccGctgctgtgtcaagttgtagc	14	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	160114946	160114946	G	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.136	p.R46W	0.999	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	178	0	0	110	73	39.89	-	-	-	A	160114946	G	A	160114946	3	1	228	1	0	0	0	0	1	0	0	0	1121	1086	38	1	4337	1	ATP10B	5	160114946	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	293190	160114946	20800314	440	14546										
GABRB2	0	genome.wustl.edu	37	chr5	160886667	160886667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtgccatcaggatgcaggcGaatcatgcggttcttaacag	13	9	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	160886667	160886667	G	A	SNP	GABRB2	ENST00000274547	human	ensembl	69_37n	-1	known	missense	c.421	p.R141C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	108	0	0	28	51	64.56	-	-	-	A	160886667	G	A	160886667	3	1	228	1	0	0	0	0	1	0	0	0	6216	1058	37	1	1145	1	GABRB2	5	160886667	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	771721	160886667	20028593	441	14547										
ODZ2	0	genome.wustl.edu	37	chr5	167545408	167545408	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcccatgaatcagtgcatcgAtccttcctgcgggggccacg	12	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	167545408	167545408	A	G	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.1925	p.D642G	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	237	0	0	164	112	40.58	-	-	-	G	167545408	A	G	167545408	3	3	228	1	0	0	0	0	1	0	0	0	10908	333	12	5	1963	5	ODZ2	5	167545408	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	6658741	167545408	13369852	442	14548										
SLIT3	0	genome.wustl.edu	37	chr5	168135106	168135106	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgttgatgtccactggccCtgggcagcaaaaccagagta	11	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	168135106	168135106	C	A	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	splice_site	c.2720-1	e26-1	1.000	-	-	-	no_errors	SLIT3	HGNC	ENSG00000184347	33	0	0	27	19	41.3	-	-	-	A	168135106	C	A	168135106	5	1	228	1	0	0	0	0	0	0	1	0	14830	695	24	4	1896	4	SLIT3	5	168135106	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	589698	168135106	12780154	443	14549										
DUSP1	0	genome.wustl.edu	37	chr5	172196716	172196716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttgatcaaggcagtgatgcCcaaggcatccagcatgtcct	11	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	172196716	172196716	C	T	SNP	DUSP1	ENST00000239223	human	ensembl	69_37n	-1	known	missense	c.595	p.G199S	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129	107	0	0	43	31	41.89	-	-	-	T	172196716	C	T	172196716	3	4	228	1	0	0	0	0	1	0	0	0	4844	623	22	4	516	4	DUSP1	5	172196716	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4061610	172196716	8718544	444	14550										
CPEB4	0	genome.wustl.edu	37	chr5	173378904	173378904	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacttgacccacgaaaaacTatatttgttggtggtgttcc	8	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	173378904	173378904	T	C	SNP	CPEB4	ENST00000265085	human	ensembl	69_37n	1	known	silent	c.1743	p.T581	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742	124	0	0	75	51	40.48	-	-	-	C	173378904	T	C	173378904	2	2	228	1	0	0	0	0	0	0	0	1	3833	1509	53	5		5	CPEB4	5	173378904	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1182188	173378904	7536356	445	14551										
KIAA1191	0	genome.wustl.edu	37	chr5	175774496	175774496	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttacaggcgtgagccaccacGcccagctgattaagttttta	9	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	175774496	175774496	G	A	SNP	KIAA1191	ENST00000393728	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.052	-	-	-	no_errors	KIAA1191	HGNC	ENSG00000122203	58	0	0	49	31	38.75	-	-	-	A	175774496	G	A	175774496	1	1	228	0	1	0	0	0	0	0	0	0	8264	1102	38	1		1	KIAA1191	5	175774496	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2395592	175774496	5140764	446	14552										
RGS14	0	genome.wustl.edu	37	chr5	176798485	176798485	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aattctcgcagggctgcccaCctagaactcaggataaggcc	10	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	176798485	176798485	C	T	SNP	RGS14	ENST00000408923	human	ensembl	69_37n	1	known	missense	c.1393	p.P465S	0.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS14	HGNC	ENSG00000169220	127	1	0.78	81	54	40	-	-	-	T	176798485	C	T	176798485	3	4	228	1	0	0	0	0	1	0	0	0	13381	507	18	4	1447	4	RGS14	5	176798485	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1023989	176798485	4116775	447	14553										
SLC34A1	0	genome.wustl.edu	37	chr5	176813345	176813345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagctcggccttccagctggCtggaggtagggcccgggtgg	18	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	176813345	176813345	C	T	SNP	SLC34A1	ENST00000324417	human	ensembl	69_37n	1	known	missense	c.383	p.A128V	0.964	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	72	0	0	42	44	51.16	-	-	-	T	176813345	C	T	176813345	3	4	228	1	0	0	0	0	1	0	0	0	14656	797	28	4	393	4	SLC34A1	5	176813345	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	14860	176813345	4101915	448	14554										
DBN1	0	genome.wustl.edu	37	chr5	176885085	176885085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccctccttctgggtggtctCgccattggttagcaggtggg	14	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	176885085	176885085	C	T	SNP	DBN1	ENST00000292385	human	ensembl	69_37n	-1	known	missense	c.1756	p.E586K	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	27	0	0	12	14	53.85	-	-	-	T	176885085	C	T	176885085	3	4	228	1	0	0	0	0	1	0	0	0	4284	893	31	1	211	1	DBN1	5	176885085	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	71740	176885085	4030175	449	14555										
RUFY1	0	genome.wustl.edu	37	chr5	178987110	178987111	+	Frame_Shift_Del	DEL	TG	TG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtgttgctccagtcggctcTgagcctgggccgcagcctgg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	5	178987110	178987111	TG	-	DEL	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	frame_shift_del	c.395_396	p.L132fs	1.000:1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	18	0	0	9	8	47.06	-	-	-	-	178987111	TG	-	178987110	7	5	228	1	0	1	0	1	0	0	0	0	13824	1580	55	0	401	0	RUFY1	5	178987110	Frame_Shift_Del	DEL	TG	TCGA-A8-A09Z-01A-11W-A019-09	2102025	178987110	1928150	450	14556										
RIPK1	0	genome.wustl.edu	37	chr6	3105946	3105946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acagagaggaggaaaggagaCgcagggtctcccatgaccct	14	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	3105946	3105946	C	T	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	missense	c.1237	p.R413C	0.801	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	122	0	0	97	49	33.56	-	-	-	T	3105946	C	T	3105946	3	4	228	1	0	0	0	0	1	0	0	0	13466	536	19	1	1267	1	RIPK1	6	3105946	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09		3105946	168009121	451	14557										
TUBB2B	0	genome.wustl.edu	37	chr6	3225694	3225694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttcagggtgcggaagcagAtgtcatacagggcctcgttg	15	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	3225694	3225694	A	C	SNP	TUBB2B	ENST00000259818	human	ensembl	69_37n	-1	known	missense	c.629	p.I210S	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	27	0	0	28	11	28.21	-	-	-	C	3225694	A	C	3225694	3	2	228	1	0	0	0	0	1	0	0	0	16852	333	12	5	712	5	TUBB2B	6	3225694	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	119748	3225694	167889373	452	14558										
PRPF4B	0	genome.wustl.edu	37	chr6	4032153	4032153	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggtccagtctggtatgggGctcattttgcaaggttatga	13	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	4032153	4032153	G	A	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	silent	c.402	p.G134	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	220	0	0	110	92	45.54	-	-	-	A	4032153	G	A	4032153	2	1	228	1	0	0	0	0	0	0	0	1	12654	1190	42	4		4	PRPF4B	6	4032153	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	806459	4032153	167082914	453	14559										
GCM2	0	genome.wustl.edu	37	chr6	10882012	10882012	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgccgaccgcttcctgcacCgcggccgccggcatctgccc	11	21	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	10882012	10882012	C	A	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	silent	c.15	p.A5	0.000	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	16	0	0	16	15	48.39	-	-	-	A	10882012	C	A	10882012	2	1	228	1	0	0	0	0	0	0	0	1	6348	639	23	3		3	GCM2	6	10882012	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6849859	10882012	160233055	454	14560										
PHACTR1	0	genome.wustl.edu	37	chr6	13228273	13228273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagaggaggaggacgaagaCgacgacagctcattatacac	13	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	13228273	13228273	C	T	SNP	PHACTR1	ENST00000415087	human	ensembl	69_37n	1	known	missense	c.716	p.T239M	0.093	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHACTR1	HGNC	ENSG00000112137	142	0	0	83	65	43.62	-	-	-	T	13228273	C	T	13228273	3	4	228	1	0	0	0	0	1	0	0	0	11883	535	19	1	1238	1	PHACTR1	6	13228273	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2346261	13228273	157886794	455	14561										
GFOD1	0	genome.wustl.edu	37	chr6	13365244	13365244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgatggtgccgcgcaggtAgggcgaggggatgtcgctga	19	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	13365244	13365244	A	G	SNP	GFOD1	ENST00000379287	human	ensembl	69_37n	-1	known	missense	c.904	p.Y302H	1.000	NULL	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990	29	0	0	14	13	48.15	-	-	-	G	13365244	A	G	13365244	3	3	228	1	0	0	0	0	1	0	0	0	6395	420	15	5	272	5	GFOD1	6	13365244	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	136971	13365244	157749823	456	14562										
GMPR	0	genome.wustl.edu	37	chr6	16290772	16290772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggagaagtgtttgagaggaaCggacggaagctcaagctctt	15	6	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	16290772	16290772	C	T	SNP	GMPR	ENST00000259727	human	ensembl	69_37n	1	known	silent	c.777	p.N259	0.792	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR	HGNC	ENSG00000137198	208	0	0	111	85	42.71	-	-	-	T	16290772	C	T	16290772	2	4	228	1	0	0	0	0	0	0	0	1	6548	535	19	1		1	GMPR	6	16290772	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2925528	16290772	154824295	457	14563										
KDM1B	0	genome.wustl.edu	37	chr6	18161612	18161612	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgaagatggtggctcagagAagaagtacaggaaatgtgaa	14	3	1	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	18161612	18161612	A	G	SNP	KDM1B	ENST00000388870	human	ensembl	69_37n	1	known	missense	c.142	p.K48E	1.000	NULL	pfam_Amino_oxidase,pfam_Znf_CW,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM,pfscan_Znf_CW	-	no_errors	KDM1B	HGNC	ENSG00000165097	89	0	0	63	33	34.38	-	-	-	G	18161612	A	G	18161612	3	3	228	1	0	0	0	0	1	0	0	0	8177	247	9	5	148	5	KDM1B	6	18161612	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1870840	18161612	152953455	458	14564										
RNF144B	0	genome.wustl.edu	37	chr6	18399809	18399809	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctatctcgccatgactgctgAaaatcccactcctggagacc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	18399809	18399809	A	-	DEL	RNF144B	ENST00000259939	human	ensembl	69_37n	1	known	frame_shift_del	c.44	p.N16fs	0.211	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC	-	no_errors	RNF144B	HGNC	ENSG00000137393	132	0	0	100	68	39.77	-	-	-	-	18399809	A	-	18399809	7	5	228	1	0	1	0	1	0	0	0	0	13532	246	9	0	46	0	RNF144B	6	18399809	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	238197	18399809	152715258	459	14565										
CDKAL1	0	genome.wustl.edu	37	chr6	20548874	20548876	+	In_Frame_Del	DEL	ATA	ATA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgaacatggggttgttctcAtaataattcagatggagaat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	20548874	20548876	ATA	-	DEL	CDKAL1	ENST00000274695	human	ensembl	69_37n	1	known	in_frame_del	c.224_226	p.N77in_frame_del	1.000:1.000:1.000	pfam_Methylthiotransferase_N,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	240	0	0	157	73	30.54	-	-	-	-	20548876	ATA	-	20548874	7	5	228	1	0	1	0	1	0	0	0	0	3181	217	8	0	230	0	CDKAL1	6	20548874	In_Frame_Del	DEL	ATA	TCGA-A8-A09Z-01A-11W-A019-09	2149065	20548874	150566193	460	14566										
SLC17A2	0	genome.wustl.edu	37	chr6	25918757	25918757	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagctcaaggcctgtgagaTtagtccccccacacagagga	10	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	25918757	25918757	T	C	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	missense	c.607	p.I203V	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	178	0	0	108	81	42.86	-	-	-	C	25918757	T	C	25918757	3	2	228	1	0	0	0	0	1	0	0	0	14506	1493	52	5	727	5	SLC17A2	6	25918757	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5369883	25918757	145196310	461	14567										
HIST1H3B	0	genome.wustl.edu	37	chr6	26031979	26031979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggtttgtgtcctcaaagaGccctaccaagtaggcctcac	9	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	26031979	26031979	G	A	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.310	p.L104F	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	86	0	0	62	44	41.12	-	-	-	A	26031979	G	A	26031979	3	1	228	1	0	0	0	0	1	0	0	0	7207	971	34	4	104	4	HIST1H3B	6	26031979	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	113222	26031979	145083088	462	14568										
HIST1H2AG	0	genome.wustl.edu	37	chr6	27101162	27101162	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgggcaaagtcaccatcgcAcagggcggtgtcctgcccaa	12	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	27101162	27101162	A	G	SNP	HIST1H2AG	ENST00000359193	human	ensembl	69_37n	1	known	silent	c.312	p.A104	0.705	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787	106	0	0	66	47	41.59	-	-	-	G	27101162	A	G	27101162	2	3	228	1	0	0	0	0	0	0	0	1	7184	146	6	5		5	HIST1H2AG	6	27101162	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1069183	27101162	144013905	463	14569										
HIST1H2AL	0	genome.wustl.edu	37	chr6	27833446	27833446	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggcaaagtaaccatcgctcAgggtggtgtcctgcccaaca	12	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	27833446	27833446	A	G	SNP	HIST1H2AL	ENST00000357320	human	ensembl	69_37n	1	known	missense	c.314	p.Q105R	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374	171	0	0	110	78	41.49	-	-	-	G	27833446	A	G	27833446	3	3	228	1	0	0	0	0	1	0	0	0	7189	188	7	5	316	5	HIST1H2AL	6	27833446	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	732284	27833446	143281621	464	14570										
LY6G6C	0	genome.wustl.edu	37	chr6	31687959	31687959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagcacagggaccttgtagCaggagtgacagcgaatgtca	13	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	31687959	31687959	C	T	SNP	LY6G6C	ENST00000375819	human	ensembl	69_37n	-1	known	missense	c.74	p.C25Y	1.000	NULL	NULL	-	no_errors	LY6G6C	HGNC	ENSG00000204421	119	0	0	64	39	37.86	-	-	-	T	31687959	C	T	31687959	3	4	228	1	0	0	0	0	1	0	0	0	9161	710	25	4	311	4	LY6G6C	6	31687959	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3854513	31687959	139427108	465	14571										
SKIV2L	0	genome.wustl.edu	37	chr6	31930829	31930829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctatcatccttctgagtgCcaccgtccccaacgcccttg	6	17	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	31930829	31930829	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	missense	c.1364	p.A455V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	34	0	0	21	11	34.38	-	-	-	T	31930829	C	T	31930829	3	4	228	1	0	0	0	0	1	0	0	0	14448	739	26	4	1414	4	SKIV2L	6	31930829	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	242870	31930829	139184238	466	14572										
TNXB	0	genome.wustl.edu	37	chr6	32029249	32029249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggtgcatcttgtatttgcGcccaggctccaggcccccca	10	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	32029249	32029249	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.7417	p.R2473C	0.672	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	26	0	0	30	18	36.73	-	-	-	A	32029249	G	A	32029249	3	1	228	1	0	0	0	0	1	0	0	0	16441	1087	38	1	7392	1	TNXB	6	32029249	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	98420	32029249	139085818	467	14573										
TNXB	0	genome.wustl.edu	37	chr6	32057126	32057126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaggcagagcttggaacccGtgctgtgaatggggggctcg	18	8	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	32057126	32057126	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.2389	p.R797W	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	28	0	0	11	11	50	-	-	-	A	32057126	G	A	32057126	3	1	228	1	0	0	0	0	1	0	0	0	16441	1144	40	1	12484	1	TNXB	6	32057126	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	27877	32057126	139057941	468	14574										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32632785	32632785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatgtatctggtcacaagacGcacgcgctccgtcccgttgg	12	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	32632785	32632785	G	A	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	missense	c.169	p.R57C	0.431	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	55	0	0	20	35	63.64	-	-	-	A	32632785	G	A	32632785	3	1	228	1	0	0	0	0	1	0	0	0	7257	1087	38	1	632	1	HLA-DQB1	6	32632785	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	575659	32632785	138482282	469	14575										
VPS52	0	genome.wustl.edu	37	chr6	33237282	33237282	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctaacctccaggacagcatcAcaggctgtgatctggttgtg	11	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	33237282	33237282	A	G	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	silent	c.357	p.C119	0.998	pfam_Vps52,pfam_Exocyst_Exoc1	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	149	0	0	92	53	36.55	-	-	-	G	33237282	A	G	33237282	2	3	228	1	0	0	0	0	0	0	0	1	17311	157	6	5		5	VPS52	6	33237282	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	604497	33237282	137877785	470	14576										
ITPR3	0	genome.wustl.edu	37	chr6	33661382	33661382	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaggaacacatcaagctggAgcacaacatgtggaactact	10	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	33661382	33661382	A	C	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.7685	p.E2562A	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	55	0	0	18	10	35.71	-	-	-	C	33661382	A	C	33661382	3	2	228	1	0	0	0	0	1	0	0	0	7976	304	11	5	7907	5	ITPR3	6	33661382	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	424100	33661382	137453685	471	14577										
TCP11	0	genome.wustl.edu	37	chr6	35103901	35103901	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacctgcttggaggtaaaacCttctcttccatgtagtaatc	7	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	35103901	35103901	C	A	SNP	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	missense	c.258	p.K86N	0.055	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	42	0	0	26	21	44.68	-	-	-	A	35103901	C	A	35103901	3	1	228	1	0	0	0	0	1	0	0	0	15808	680	24	4	1324	4	TCP11	6	35103901	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1442519	35103901	136011166	472	14578										
PPIL1	0	genome.wustl.edu	37	chr6	36823699	36823699	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctatgccctgacacactcGgccaaaaatggtgtgtttgc	9	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	36823699	36823699	G	A	SNP	PPIL1	ENST00000373699	human	ensembl	69_37n	-1	known	nonsense	c.391	p.R131*	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL1	HGNC	ENSG00000137168	131	0	0	67	35	34.31	-	-	-	A	36823699	G	A	36823699	4	1	228	1	0	0	0	0	0	1	0	0	12403	1124	39	1	113	1	PPIL1	6	36823699	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1719798	36823699	134291368	473	14579										
KCNK16	0	genome.wustl.edu	37	chr6	39284652	39284652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctccacatggctgaagacCatgggtgggaagatgagaat	13	9	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	39284652	39284652	C	A	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	missense	c.567	p.M189I	0.834	pfam_Ion_trans_2	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	192	0	0	111	91	44.83	-	-	-	A	39284652	C	A	39284652	3	1	228	1	0	0	0	0	1	0	0	0	8117	594	21	4	759	4	KCNK16	6	39284652	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2460953	39284652	131830415	474	14580										
DAAM2	0	genome.wustl.edu	37	chr6	39855370	39855370	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcatcatccttctttccaagTatgtgcaaaagaaggtggtt	9	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	39855370	39855370	T	C	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	splice_site	c.2060+2	e15+2	1.000	-	-	-	no_errors	DAAM2	HGNC	ENSG00000146122	18	0	0	7	8	53.33	-	-	-	C	39855370	T	C	39855370	5	2	228	1	0	0	0	0	0	0	1	0	4248	1652	57	5	2120	5	DAAM2	6	39855370	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	570718	39855370	131259697	475	14581										
ZNF318	0	genome.wustl.edu	37	chr6	43323176	43323176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcggtcaactgaggaacgGcggtcagctgaggagcgtaa	15	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	43323176	43323176	G	A	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	silent	c.1896	p.R632	0.822	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	262	0	0	144	104	41.94	-	-	-	A	43323176	G	A	43323176	2	1	228	1	0	0	0	0	0	0	0	1	17932	1190	42	4		4	ZNF318	6	43323176	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3467806	43323176	127791891	476	14582										
SLC29A1	0	genome.wustl.edu	37	chr6	44198032	44198032	+	RNA	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggatctgtcttcttgggcaCccccaaccaccagccctagc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	44198032	44198032	C	-	DEL	SLC29A1	ENST00000472176	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC29A1	HGNC	ENSG00000112759	77	0	0	58	23	28.05	-	-	-	-	44198032	C	-	44198032	6	5	228	0	1	1	0	1	0	0	0	0	14623	522	18	0		0	SLC29A1	6	44198032	RNA	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	874856	44198032	126917035	477	14583										
CDC5L	0	genome.wustl.edu	37	chr6	44414424	44414425	+	Frame_Shift_Del	DEL	AG	AG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctgatttgctgctggagaaAgagactttaaagtcaaaatt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	44414424	44414425	AG	-	DEL	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	frame_shift_del	c.2385_2386	p.E796fs	0.999:1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	179	0	0	118	61	34.08	-	-	-	-	44414425	AG	-	44414424	7	5	228	1	0	1	0	1	0	0	0	0	3111	69	3	0	2447	0	CDC5L	6	44414424	Frame_Shift_Del	DEL	AG	TCGA-A8-A09Z-01A-11W-A019-09	216392	44414424	126700643	478	14584										
CYP39A1	0	genome.wustl.edu	37	chr6	46593217	46593217	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtggatatcaggatgagaaAggacgtatgcaagtgtccaa	13	5	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	46593217	46593217	A	G	SNP	CYP39A1	ENST00000275016	human	ensembl	69_37n	-1	known	missense	c.869	p.L290P	0.888	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP39A1	HGNC	ENSG00000146233	190	0	0	103	59	36.42	-	-	-	G	46593217	A	G	46593217	3	3	228	1	0	0	0	0	1	0	0	0	4208	72	3	5	564	5	CYP39A1	6	46593217	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2178793	46593217	124521850	479	14585										
MEP1A	0	genome.wustl.edu	37	chr6	46801060	46801060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attctacaattcggagggatAtggttttggggtaactttat	11	4	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	46801060	46801060	A	G	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	missense	c.1394	p.Y465C	0.998	pirsf_Pept_M12A_Meprin,pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	268	0	0	117	97	45.33	-	-	-	G	46801060	A	G	46801060	3	3	228	1	0	0	0	0	1	0	0	0	9546	449	16	5	1436	5	MEP1A	6	46801060	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	207843	46801060	124314007	480	14586										
CD2AP	0	genome.wustl.edu	37	chr6	47547214	47547215	+	Frame_Shift_Del	DEL	AA	AA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccagataaatgaacttgatAaagactttccagtaagcttt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	47547214	47547215	AA	-	DEL	CD2AP	ENST00000359314	human	ensembl	69_37n	1	known	frame_shift_del	c.997_998	p.K333fs	1.000:1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	149	0	0	99	42	29.79	-	-	-	-	47547215	AA	-	47547214	7	5	228	1	0	1	0	1	0	0	0	0	3023	363	13	0	1031	0	CD2AP	6	47547214	Frame_Shift_Del	DEL	AA	TCGA-A8-A09Z-01A-11W-A019-09	746154	47547214	123567853	481	14587										
CD2AP	0	genome.wustl.edu	37	chr6	47580254	47580254	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatttggaagaagagaagacAatgagaagtaatctagaggt	13	2	1	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	47580254	47580254	A	G	SNP	CD2AP	ENST00000359314	human	ensembl	69_37n	1	known	silent	c.1860	p.T620	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	188	1	0.53	80	53	39.85	-	-	-	G	47580254	A	G	47580254	2	3	228	1	0	0	0	0	0	0	0	1	3023	117	5	5		5	CD2AP	6	47580254	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	33040	47580254	123534813	482	14588										
PKHD1	0	genome.wustl.edu	37	chr6	51512839	51512839	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttacctaccttttagcacTgagtctgatgctccttccag	6	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	51512839	51512839	T	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.11388	p.S3796	0.003	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	256	0	0	131	77	36.84	-	-	-	C	51512839	T	C	51512839	2	2	228	1	0	0	0	0	0	0	0	1	12045	1567	55	5		5	PKHD1	6	51512839	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3932585	51512839	119602228	483	14589										
LRRC1	0	genome.wustl.edu	37	chr6	53787447	53787447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttagagaacacttctaagGcgagccactccacacccagg	8	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	53787447	53787447	G	A	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	silent	c.1431	p.R477	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	333	0	0	185	99	34.86	-	-	-	A	53787447	G	A	53787447	2	1	228	1	0	0	0	0	0	0	0	1	9032	1194	42	4		4	LRRC1	6	53787447	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2274608	53787447	117327620	484	14590										
DST	0	genome.wustl.edu	37	chr6	56417125	56417125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcaaggcgcttaattgtccCttcaacctgctcttctctgg	7	13	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	56417125	56417125	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.16372	p.G5458W	0.955	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	145	0	0	71	52	42.28	-	-	-	A	56417125	C	A	56417125	3	1	228	1	0	0	0	0	1	0	0	0	4818	681	24	4	7091	4	DST	6	56417125	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2629678	56417125	114697942	485	14591										
COL19A1	0	genome.wustl.edu	37	chr6	70778332	70778332	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagggttccctggggatacaAggcccccaaggtccacctgg	13	13	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	70778332	70778332	A	G	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	silent	c.1188	p.Q396	0.916	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	172	0	0	121	55	31.25	-	-	-	G	70778332	A	G	70778332	2	3	228	1	0	0	0	0	0	0	0	1	3706	69	3	5		5	COL19A1	6	70778332	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	14361207	70778332	100336735	486	14592										
PHIP	0	genome.wustl.edu	37	chr6	79675691	79675691	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagcattgaaacagactatcAgggtactcaagttgaagagg	11	6	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	79675691	79675691	A	G	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	silent	c.3288	p.P1096	0.981	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	334	0	0	207	115	35.71	-	-	-	G	79675691	A	G	79675691	2	3	228	1	0	0	0	0	0	0	0	1	11916	175	7	5		5	PHIP	6	79675691	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	8897359	79675691	91439376	487	14593										
PHIP	0	genome.wustl.edu	37	chr6	79692714	79692716	+	In_Frame_Del	DEL	TTC	TTC	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttgcttctgtttttcagaTtcttcttcttcatctgaact							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	79692714	79692716	TTC	-	DEL	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	in_frame_del	c.2658_2656	p.E886in_frame_del	1.000:1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	211	0	0	82	55	40.15	-	-	-	-	79692716	TTC	-	79692714	7	5	228	1	0	1	0	1	0	0	0	0	11916	1490	52	0	2879	0	PHIP	6	79692714	In_Frame_Del	DEL	TTC	TCGA-A8-A09Z-01A-11W-A019-09	17023	79692714	91422353	488	14594										
KIAA1009	0	genome.wustl.edu	37	chr6	84862695	84862695	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactgaaaatcttcatcatcTttatcatttttcttgacgtc	4	9	6	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	84862695	84862695	T	C	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	silent	c.3198	p.K1066	0.001	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	292	0	0	153	79	34.05	-	-	-	C	84862695	T	C	84862695	2	2	228	1	0	0	0	0	0	0	0	1	8255	1606	56	5		5	KIAA1009	6	84862695	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5169981	84862695	86252372	489	14595										
SNX14	0	genome.wustl.edu	37	chr6	86216976	86216976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagctctggaaacagttccTgtatcacaatgtccaataaa	7	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	86216976	86216976	T	C	SNP	SNX14	ENST00000314673	human	ensembl	69_37n	-1	known	missense	c.2777	p.Q926R	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX14	HGNC	ENSG00000135317	72	0	0	43	34	44.16	-	-	-	C	86216976	T	C	86216976	3	2	228	1	0	0	0	0	1	0	0	0	14974	1580	55	5	71	5	SNX14	6	86216976	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1354281	86216976	84898091	490	14596										
HTR1E	0	genome.wustl.edu	37	chr6	87725663	87725663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatactgattctctattaccGgatttaccacgcggccaaga	8	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	87725663	87725663	G	A	SNP	HTR1E	ENST00000305344	human	ensembl	69_37n	1	known	missense	c.611	p.R204Q	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HTR1E	HGNC	ENSG00000168830	323	0	0	189	106	35.93	-	-	-	A	87725663	G	A	87725663	3	1	228	1	0	0	0	0	1	0	0	0	7493	1116	39	1	613	1	HTR1E	6	87725663	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1508687	87725663	83389404	491	14597										
MDN1	0	genome.wustl.edu	37	chr6	90398377	90398377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagcacaggttgacactgcCgtgcttctggaacattggga	13	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	90398377	90398377	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.11174	p.R3725Q	0.984	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	55	0	0	31	16	34.04	-	-	-	T	90398377	C	T	90398377	3	4	228	1	0	0	0	0	1	0	0	0	9486	652	23	1	5764	1	MDN1	6	90398377	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2672714	90398377	80716690	492	14598										
EPHA7	0	genome.wustl.edu	37	chr6	93964516	93964516	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttactggaatttttccacccTgttataaaaagaaatgaaca	5	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	93964516	93964516	T	C	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	splice_site	c.2383-2	e14-2	0.997	-	-	-	no_errors	EPHA7	HGNC	ENSG00000135333	86	0	0	29	28	49.12	-	-	-	C	93964516	T	C	93964516	5	2	228	1	0	0	0	0	0	0	1	0	5209	1594	55	5	631	5	EPHA7	6	93964516	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3566139	93964516	77150551	493	14599										
GPR63	0	genome.wustl.edu	37	chr6	97246395	97246395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacatagacagcactaggacGtatccgtcgctttgtgtgac	10	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	97246395	97246395	G	A	SNP	GPR63	ENST00000229955	human	ensembl	69_37n	-1	known	missense	c.1213	p.R405C	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218	151	0	0	93	66	41.51	-	-	-	A	97246395	G	A	97246395	3	1	228	1	0	0	0	0	1	0	0	0	6754	1145	40	1	50	1	GPR63	6	97246395	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3281879	97246395	73868672	494	14600										
AIM1	0	genome.wustl.edu	37	chr6	106967919	106967919	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcgtagtccagaagctgtgGgaagtgagtgtccatccaga	14	8	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	106967919	106967919	G	T	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	nonsense	c.1612	p.G538*	0.023	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	75	0	0	44	35	44.3	-	-	-	T	106967919	G	T	106967919	4	4	228	1	0	0	0	0	0	1	0	0	430	1233	43	4	1618	4	AIM1	6	106967919	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	9721524	106967919	64147148	495	14601										
TSPYL4	0	genome.wustl.edu	37	chr6	116574620	116574621	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttcacccctcctgccaccINStttttttccttctgcactac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	116574620	116574621	-	T	INS	TSPYL4	ENST00000420283	human	ensembl	69_37n	-1	known	frame_shift_ins	c.552_551	p.V185fs	0.180:0.135	NULL	pfam_NAP_family	-	no_errors	TSPYL4	HGNC	ENSG00000187189	18	0	0	9	10	52.63	-	-	-	T	116574621	-	T	116574620	7	5	228	1	0	1	1	0	0	0	0	0	16757	680	24	0	696	0	TSPYL4	6	116574620	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	9606701	116574620	54540447	496	14602										
TSPYL1	0	genome.wustl.edu	37	chr6	116599774	116599774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccttcacgcaacaggtagTattgcagtggatttggccac	10	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	116599774	116599774	T	C	SNP	TSPYL1	ENST00000368608	human	ensembl	69_37n	-1	known	missense	c.1220	p.Y407C	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241	132	0	0	77	57	42.54	-	-	-	C	116599774	T	C	116599774	3	2	228	1	0	0	0	0	1	0	0	0	16755	1638	57	5	97	5	TSPYL1	6	116599774	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	25154	116599774	54515293	497	14603										
KPNA5	0	genome.wustl.edu	37	chr6	117047767	117047767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aactaatgcaacatcaggagGtactccagagcaaataaggt	9	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	117047767	117047767	G	A	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	missense	c.1235	p.G412D	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	191	0	0	118	66	35.87	-	-	-	A	117047767	G	A	117047767	3	1	228	1	0	0	0	0	1	0	0	0	8486	1261	44	4	1281	4	KPNA5	6	117047767	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	447993	117047767	54067300	498	14604										
TRDN	0	genome.wustl.edu	37	chr6	123653063	123653063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggaactttctcttctttccCtttaataggttctgaaaaga	6	8	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	123653063	123653063	C	T	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.1432	p.G478R	0.016	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	16	0	0	2	6	75	-	-	-	T	123653063	C	T	123653063	3	4	228	1	0	0	0	0	1	0	0	0	16564	681	24	4	833	4	TRDN	6	123653063	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6605296	123653063	47462004	499	14605										
ECHDC1	0	genome.wustl.edu	37	chr6	127648231	127648231	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacggacaatgaggcctttCccctctgtccaattttccaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	127648231	127648231	C	-	DEL	ECHDC1	ENST00000531967	human	ensembl	69_37n	-1	known	frame_shift_del	c.297	p.G101fs	1.000	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC1	HGNC	ENSG00000093144	297	0	0	156	85	34.27	-	-	-	-	127648231	C	-	127648231	7	5	228	1	0	1	0	1	0	0	0	0	4928	842	30	0	642	0	ECHDC1	6	127648231	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	3995168	127648231	43466836	500	14606										
KIAA0408	0	genome.wustl.edu	37	chr6	127767596	127767596	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccttgcttcacttcctgtCccccccacacagctgtcttt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	127767596	127767596	C	-	DEL	KIAA0408	ENST00000483725	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1868	p.G623fs	0.230	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367	544	0	0	307	142	31.21	-	-	-	-	127767596	C	-	127767596	7	5	228	1	0	1	0	1	0	0	0	0	8226	855	30	0	224	0	KIAA0408	6	127767596	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	119365	127767596	43347471	501	14607										
TAAR9	0	genome.wustl.edu	37	chr6	132859626	132859626	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctaacaactgcacacaccTacaaactttctgattgcgtc	4	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	132859626	132859626	T	C	SNP	TAAR9	ENST00000434551	human	ensembl	69_37n	1	known	silent	c.198	p.P66	0.119	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAAR9	HGNC	ENSG00000237110	166	0	0	69	64	48.12	-	-	-	C	132859626	T	C	132859626	2	2	228	1	0	0	0	0	0	0	0	1	15586	1509	53	5		5	TAAR9	6	132859626	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5092030	132859626	38255441	502	14608										
BCLAF1	0	genome.wustl.edu	37	chr6	136593209	136593209	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagggtacttggtgagatgTcaattctccttaatgtaaaa	9	6	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	136593209	136593209	T	A	SNP	BCLAF1	ENST00000531224	human	ensembl	69_37n	-1	known	missense	c.1967	p.D656V	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	104	0	0	84	41	32.8	-	-	-	A	136593209	T	A	136593209	3	1	228	1	0	0	0	0	1	0	0	0	1387	1667	58	5	819	5	BCLAF1	6	136593209	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3733583	136593209	34521858	503	14609										
MAP7	0	genome.wustl.edu	37	chr6	136710531	136710531	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcctccgcttctcctccacAgcagccctcctccgctcctc	5	23	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	136710531	136710531	A	G	SNP	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	silent	c.435	p.A145	0.002	NULL	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	229	1	0.43	122	91	42.13	-	-	-	G	136710531	A	G	136710531	2	3	228	1	0	0	0	0	0	0	0	1	9337	175	7	5		5	MAP7	6	136710531	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	117322	136710531	34404536	504	14610										
OLIG3	0	genome.wustl.edu	37	chr6	137814987	137814987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcgcgtagggcatgacttcGcgcagcccgtccatggctag	14	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	137814987	137814987	G	A	SNP	OLIG3	ENST00000367734	human	ensembl	69_37n	-1	known	silent	c.321	p.R107	0.998	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	OLIG3	HGNC	ENSG00000177468	42	0	0	22	12	35.29	-	-	-	A	137814987	G	A	137814987	2	1	228	1	0	0	0	0	0	0	0	1	10935	1074	38	1		1	OLIG3	6	137814987	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1104456	137814987	33300080	505	14611										
HECA	0	genome.wustl.edu	37	chr6	139487510	139487510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agaaggtggtgtgcaacaacGagcactgcccctgcagcacc	12	13	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	139487510	139487510	G	A	SNP	HECA	ENST00000367658	human	ensembl	69_37n	1	known	missense	c.361	p.E121K	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406	164	0	0	111	69	38.12	-	-	-	A	139487510	G	A	139487510	3	1	228	1	0	0	0	0	1	0	0	0	7089	1059	37	1	367	1	HECA	6	139487510	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1672523	139487510	31627557	506	14612										
HIVEP2	0	genome.wustl.edu	37	chr6	143094744	143094745	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatggctcagaatcttgtccINSttttttctctgacagtctta							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	143094744	143094745	-	T	INS	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1132_1131	p.G377fs	1.000:1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	184	0	0	107	47	30.52	-	-	-	T	143094745	-	T	143094744	7	5	228	1	0	1	1	0	0	0	0	0	7238	690	24	0	6232	0	HIVEP2	6	143094744	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	3607234	143094744	28020323	507	14613										
STX11	0	genome.wustl.edu	37	chr6	144508077	144508077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtcatccactgcaagctgCgcgccatgaaggagctgagc	13	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	144508077	144508077	C	T	SNP	STX11	ENST00000367568	human	ensembl	69_37n	1	known	missense	c.313	p.R105C	0.654	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604	24	0	0	22	15	40.54	-	-	-	T	144508077	C	T	144508077	3	4	228	1	0	0	0	0	1	0	0	0	15428	768	27	1	315	1	STX11	6	144508077	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1413333	144508077	26606990	508	14614										
SYNE1	0	genome.wustl.edu	37	chr6	152540177	152540177	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgcagagagcttgctccagGgcacacaagtgttgactcaa	11	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	152540177	152540177	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.22005	p.A7335	0.427	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	204	0	0	99	71	41.52	-	-	-	T	152540177	G	T	152540177	2	4	228	1	0	0	0	0	0	0	0	1	15537	1219	43	4		4	SYNE1	6	152540177	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8032100	152540177	18574890	509	14615										
SYNE1	0	genome.wustl.edu	37	chr6	152762358	152762358	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtttgaaaaaggtatcttacTactgtttctttgtttgtttc	7	5	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	152762358	152762358	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.4056	p.V1352	0.958	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	69	0	0	33	23	41.07	-	-	-	C	152762358	T	C	152762358	2	2	228	1	0	0	0	0	0	0	0	1	15537	1509	53	5		5	SYNE1	6	152762358	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	222181	152762358	18352709	510	14616										
FBXO5	0	genome.wustl.edu	37	chr6	153292164	153292164	+	RNA	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtctatcctctttatcttctGgggggaaaaaaacctcagga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	153292164	153292164	G	-	DEL	FBXO5	ENST00000477822	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXO5	HGNC	ENSG00000112029	34	0	0	27	8	22.22	-	-	-	-	153292164	G	-	153292164	6	5	228	0	1	1	0	1	0	0	0	0	5804	1363	47	0		0	FBXO5	6	153292164	RNA	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	529806	153292164	17822903	511	14617										
OPRM1	0	genome.wustl.edu	37	chr6	154410918	154410918	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttacctatattttacactAgtgtcttttactgattctca	4	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	154410918	154410918	A	G	SNP	OPRM1	ENST00000522382	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OPRM1	HGNC	ENSG00000112038	185	0	0	114	91	43.96	-	-	-	G	154410918	A	G	154410918	1	3	228	0	1	0	0	0	0	0	0	0	10960	435	15	5		5	OPRM1	6	154410918	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1118754	154410918	16704149	512	14618										
SYTL3	0	genome.wustl.edu	37	chr6	159086487	159086487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcgaagaacacggactgggaGcacaaagagaagtgctgtgc	15	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	159086487	159086487	G	A	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	silent	c.171	p.E57	0.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	8	0	0	9	4	30.77	-	-	-	A	159086487	G	A	159086487	2	1	228	1	0	0	0	0	0	0	0	1	15576	962	34	4		4	SYTL3	6	159086487	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4675569	159086487	12028580	513	14619										
SYTL3	0	genome.wustl.edu	37	chr6	159166609	159166609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atttgccattcattattgctTcaaaacccattctttagaaa	3	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	159166609	159166609	T	C	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	missense	c.953	p.F318S	0.768	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	51	0	0	56	23	29.11	-	-	-	C	159166609	T	C	159166609	3	2	228	1	0	0	0	0	1	0	0	0	15576	1783	62	5	775	5	SYTL3	6	159166609	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	80122	159166609	11948458	514	14620										
SLC22A2	0	genome.wustl.edu	37	chr6	160664611	160664611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctgaaacttaccaccaggTataaaaactgaggccagaca	7	11	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	160664611	160664611	T	C	SNP	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	missense	c.1272	p.I424M	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	97	0	0	94	65	40.88	-	-	-	C	160664611	T	C	160664611	3	2	228	1	0	0	0	0	1	0	0	0	14540	1628	57	5	415	5	SLC22A2	6	160664611	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1498002	160664611	10450456	515	14621										
MAP3K4	0	genome.wustl.edu	37	chr6	161529876	161529876	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatctggttcggtattttggTgtggagctccatagagtaag	13	5	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	161529876	161529876	T	A	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	silent	c.4221	p.G1407	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	388	0	0	209	150	41.67	-	-	-	A	161529876	T	A	161529876	2	1	228	1	0	0	0	0	0	0	0	1	9323	1683	59	5		5	MAP3K4	6	161529876	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	865265	161529876	9585191	516	14622										
PARK2	0	genome.wustl.edu	37	chr6	162622238	162622238	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccggctgcactctttgacaGgggcctttgcaatacacata	9	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	162622238	162622238	G	T	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	silent	c.459	p.P153	0.985	pirsf_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	119	0	0	61	40	39.6	-	-	-	T	162622238	G	T	162622238	2	4	228	1	0	0	0	0	0	0	0	1	11522	987	35	4		4	PARK2	6	162622238	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1092362	162622238	8492829	517	14623										
THBS2	0	genome.wustl.edu	37	chr6	169648728	169648728	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagaccacatgccgggtgccGtcaatccagtaggtgagatc	13	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	6	169648728	169648728	G	A	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	silent	c.393	p.D131	0.628	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	35	0	0	53	34	39.08	-	-	-	A	169648728	G	A	169648728	2	1	228	1	0	0	0	0	0	0	0	1	15949	1136	40	1		1	THBS2	6	169648728	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7026490	169648728	1466339	518	14624										
IQCE	0	genome.wustl.edu	37	chr7	2641075	2641075	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttctttttttttttccagAaaaaaaaggctgttctggat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	2641075	2641075	A	-	DEL	IQCE	ENST00000402050	human	ensembl	69_37n	1	known	frame_shift_del	c.1609	p.K539fs	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCE	HGNC	ENSG00000106012	65	0	0	41	16	28.07	-	-	-	-	2641075	A	-	2641075	7	5	228	1	0	1	0	1	0	0	0	0	7860	260	9	0	1679	0	IQCE	7	2641075	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09		2641075	156497588	519	14625										
RBAK	0	genome.wustl.edu	37	chr7	5104215	5104215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagaggccctatccatgtaaCgaatgtgggaaatccttctc	10	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	5104215	5104215	C	T	SNP	RBAK	ENST00000353796	human	ensembl	69_37n	1	known	silent	c.1128	p.N376	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	358	0	0	227	172	43	-	-	-	T	5104215	C	T	5104215	2	4	228	1	0	0	0	0	0	0	0	1	13183	535	19	1		1	RBAK	7	5104215	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2463140	5104215	154034448	520	14626										
WIPI2	0	genome.wustl.edu	37	chr7	5265559	5265559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaactcgagactgtgaaagaAaagtgagttgcaaatatacg	10	5	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	5265559	5265559	A	G	SNP	WIPI2	ENST00000288828	human	ensembl	69_37n	1	known	silent	c.846	p.E282	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954	17	0	0	6	4	40	-	-	-	G	5265559	A	G	5265559	2	3	228	1	0	0	0	0	0	0	0	1	17468	11	1	5		5	WIPI2	7	5265559	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	161344	5265559	153873104	521	14627										
TNRC18	0	genome.wustl.edu	37	chr7	5353439	5353439	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgctcggctccagggctaaGggggtactggggacctcgtc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	5353439	5353439	G	-	DEL	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	frame_shift_del	c.7083	p.L2362fs	0.001	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	47	0	0	27	8	22.86	-	-	-	-	5353439	G	-	5353439	7	5	228	1	0	1	0	1	0	0	0	0	16434	987	35	0	1839	0	TNRC18	7	5353439	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	87880	5353439	153785224	522	14628										
FBXL18	0	genome.wustl.edu	37	chr7	5541110	5541110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggacggagatgaggaaggCgtggaggttctgaggagtgc	21	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	5541110	5541110	C	T	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.790	p.A264T	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	13	0	0	6	4	40	-	-	-	T	5541110	C	T	5541110	3	4	228	1	0	0	0	0	1	0	0	0	5760	768	27	1	1378	1	FBXL18	7	5541110	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	187671	5541110	153597553	523	14629										
COL28A1	0	genome.wustl.edu	37	chr7	7413108	7413108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgatctgaaagttctctggcCccacgctttctgagctgtcg	10	12	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	7413108	7413108	C	T	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	missense	c.2429	p.G810E	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	201	0	0	118	70	37.23	-	-	-	T	7413108	C	T	7413108	3	4	228	1	0	0	0	0	1	0	0	0	3716	623	22	4	964	4	COL28A1	7	7413108	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1871998	7413108	151725555	524	14630										
SCIN	0	genome.wustl.edu	37	chr7	12668845	12668845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agaggacagattatctacacGtggtgagtttatacgggtaa	12	5	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	12668845	12668845	G	A	SNP	SCIN	ENST00000297029	human	ensembl	69_37n	1	known	silent	c.1317	p.T439	0.000	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747	209	0	0	81	51	38.64	-	-	-	A	12668845	G	A	12668845	2	1	228	1	0	0	0	0	0	0	0	1	13993	1132	40	1		1	SCIN	7	12668845	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5255737	12668845	146469818	525	14631										
TWIST1	0	genome.wustl.edu	37	chr7	19156394	19156394	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccagaccgagaaggcgtagCtgagccgctcgtgagccaca	13	13	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	19156394	19156394	C	A	SNP	TWIST1	ENST00000242261	human	ensembl	69_37n	-1	known	missense	c.551	p.S184I	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TWIST1	HGNC	ENSG00000122691	10	0	0	5	8	61.54	-	-	-	A	19156394	C	A	19156394	3	1	228	1	0	0	0	0	1	0	0	0	16880	797	28	4	61	4	TWIST1	7	19156394	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6487549	19156394	139982269	526	14632										
DNAH11	0	genome.wustl.edu	37	chr7	21640533	21640533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaacaaccaccaactcttgaGcaattcaaagaacaggcaag	7	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	21640533	21640533	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.3240	p.E1080	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	501	1	0.2	306	205	40.04	-	-	-	A	21640533	G	A	21640533	2	1	228	1	0	0	0	0	0	0	0	1	4635	962	34	4		4	DNAH11	7	21640533	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2484139	21640533	137498130	527	14633										
DNAH11	0	genome.wustl.edu	37	chr7	21939612	21939612	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaaagcaatcatgcagacgAtggctcgaaaaaatgagtgg	11	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	21939612	21939612	A	G	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.13198	p.M4400V	0.975	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	91	0	0	52	29	35.8	-	-	-	G	21939612	A	G	21939612	3	3	228	1	0	0	0	0	1	0	0	0	4635	333	12	5	13521	5	DNAH11	7	21939612	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	299079	21939612	137199051	528	14634										
DFNA5	0	genome.wustl.edu	37	chr7	24784233	24784233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atccacctcctgcttcctcaGggttccaaatgaagactggc	8	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	24784233	24784233	G	T	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	missense	c.352	p.L118M	0.993	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	230	0	0	136	110	44.35	-	-	-	T	24784233	G	T	24784233	3	4	228	1	0	0	0	0	1	0	0	0	4490	991	35	4	1170	4	DFNA5	7	24784233	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2844621	24784233	134354430	529	14635										
FAM188B	0	genome.wustl.edu	37	chr7	30831164	30831164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctggaaagagcgttcaaacgGcagggcagccagcccgcacc	13	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	30831164	30831164	G	A	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	silent	c.1047	p.R349	0.822	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	69	0	0	31	18	36.73	-	-	-	A	30831164	G	A	30831164	2	1	228	1	0	0	0	0	0	0	0	1	5556	1190	42	4		4	FAM188B	7	30831164	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6046931	30831164	128307499	530	14636										
NPSR1	0	genome.wustl.edu	37	chr7	34867150	34867150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgtggcctgacgactccTactggaccccatacatgacc	8	17	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	34867150	34867150	T	C	SNP	NPSR1	ENST00000381539	human	ensembl	69_37n	1	known	missense	c.616	p.Y206H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	NPSR1	HGNC	ENSG00000187258	199	0	0	126	87	40.85	-	-	-	C	34867150	T	C	34867150	3	2	228	1	0	0	0	0	1	0	0	0	10673	1522	53	5	634	5	NPSR1	7	34867150	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4035986	34867150	124271513	531	14637										
GLI3	0	genome.wustl.edu	37	chr7	42018225	42018225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtgaggcttctcgcccgtGtgtcttctcatatgcactac	9	12	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	42018225	42018225	G	T	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.1620	p.H540Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	68	0	0	38	32	45.71	-	-	-	T	42018225	G	T	42018225	3	4	228	1	0	0	0	0	1	0	0	0	6491	1368	48	4	3142	4	GLI3	7	42018225	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7151075	42018225	117120438	532	14638										
ABCA13	0	genome.wustl.edu	37	chr7	48288913	48288913	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgcgaagtggcccaatatgTaaatatgcaagagagtttcc	10	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	48288913	48288913	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.1970	p.V657A	0.173	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	323	2	0.62	171	116	40.42	-	-	-	C	48288913	T	C	48288913	3	2	228	1	0	0	0	0	1	0	0	0	31	1638	57	5	1857	5	ABCA13	7	48288913	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	6270688	48288913	110849750	533	14639										
AUTS2	0	genome.wustl.edu	37	chr7	70236366	70236366	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttaactttttaagttacaCattcgtggcacgtctgtgtg	8	7	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	70236366	70236366	C	T	SNP	AUTS2	ENST00000483297	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AUTS2	HGNC	ENSG00000158321	26	0	0	12	17	58.62	-	-	-	T	70236366	C	T	70236366	1	4	228	0	1	0	0	0	0	0	0	0	1229	493	17	4		4	AUTS2	7	70236366	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	21947453	70236366	88902297	534	14640										
WBSCR17	0	genome.wustl.edu	37	chr7	70886076	70886076	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctggtgggacgccggagaccCttctctccccatcaggtctg	12	15	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	70886076	70886076	C	A	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.947	p.P316H	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	58	0	0	57	42	42.42	-	-	-	A	70886076	C	A	70886076	3	1	228	1	0	0	0	0	1	0	0	0	17361	681	24	4	965	4	WBSCR17	7	70886076	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	649710	70886076	88252587	535	14641										
CALN1	0	genome.wustl.edu	37	chr7	71252819	71252819	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcatgacactgatgatgaAggccatagcaaaggcgcata	11	9	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	71252819	71252819	A	G	SNP	CALN1	ENST00000395275	human	ensembl	69_37n	-1	known	missense	c.727	p.F243L	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALN1	HGNC	ENSG00000183166	41	0	0	23	15	39.47	-	-	-	G	71252819	A	G	71252819	3	3	228	1	0	0	0	0	1	0	0	0	2616	72	3	5	62	5	CALN1	7	71252819	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	366743	71252819	87885844	536	14642										
POM121	0	genome.wustl.edu	37	chr7	72413249	72413249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagccagtccctgcacactgCcgtgccaacggccaccagca	9	19	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	72413249	72413249	C	T	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.2717	p.A906V	0.006	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	69	0	0	90	17	15.89	-	-	-	T	72413249	C	T	72413249	3	4	228	1	0	0	0	0	1	0	0	0	12313	739	26	4	1960	4	POM121	7	72413249	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1160430	72413249	86725414	537	14643										
TRIM74	0	genome.wustl.edu	37	chr7	72430734	72430734	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcgtccaccgggtggcgcaGctcctggaactcgcggcgga	15	15	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	72430734	72430734	G	T	SNP	TRIM74	ENST00000285805	human	ensembl	69_37n	-1	known	missense	c.544	p.L182M	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM74	HGNC	ENSG00000155428	30	0	0	16	22	57.89	-	-	-	T	72430734	G	T	72430734	3	4	228	1	0	0	0	0	1	0	0	0	16643	986	34	4		4	TRIM74	7	72430734	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	17485	72430734	86707929	538	14644										
BAZ1B	0	genome.wustl.edu	37	chr7	72913005	72913005	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaatcttcacaatcttcacCttgagcattttctccttccc	3	14	5	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	72913005	72913005	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	silent	c.393	p.K131	0.816	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	354	0	0	222	154	40.74	-	-	-	T	72913005	C	T	72913005	2	4	228	1	0	0	0	0	0	0	0	1	1334	680	24	4		4	BAZ1B	7	72913005	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	482271	72913005	86225658	539	14645										
TBL2	0	genome.wustl.edu	37	chr7	72985608	72985608	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accacctcctggaactccccCttctttccaaagcagacttc	4	18	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	72985608	72985608	C	A	SNP	TBL2	ENST00000305632	human	ensembl	69_37n	-1	known	missense	c.789	p.K263N	0.932	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638	39	0	0	34	11	24.44	-	-	-	A	72985608	C	A	72985608	3	1	228	1	0	0	0	0	1	0	0	0	15737	680	24	4	562	4	TBL2	7	72985608	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	72603	72985608	86153055	540	14646										
HIP1	0	genome.wustl.edu	37	chr7	75185428	75185428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccactcaccaggctgtcccGctccttctctagctcggcga	9	18	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	75185428	75185428	G	A	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.1729	p.R577W	0.990	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	156	0	0	146	82	35.96	-	-	-	A	75185428	G	A	75185428	3	1	228	1	0	0	0	0	1	0	0	0	7165	1086	38	1	1440	1	HIP1	7	75185428	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2199820	75185428	83953235	541	14647										
CCL26	0	genome.wustl.edu	37	chr7	75401299	75401299	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggctgtattggaagcagcaGgtcttggatatgtcactccc	12	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	75401299	75401299	G	T	SNP	CCL26	ENST00000005180	human	ensembl	69_37n	-1	known	silent	c.96	p.T32	0.241	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL26	HGNC	ENSG00000006606	87	0	0	54	27	33.33	-	-	-	T	75401299	G	T	75401299	2	4	228	1	0	0	0	0	0	0	0	1	2925	987	35	4		4	CCL26	7	75401299	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	215871	75401299	83737364	542	14648										
POMZP3	0	genome.wustl.edu	37	chr7	76247519	76247519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatgtttctggagtcattaGcaaagtggaagacatccact	9	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	76247519	76247519	G	A	SNP	POMZP3	ENST00000310842	human	ensembl	69_37n	-1	known	missense	c.326	p.A109V	0.790	pfam_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	POMZP3	HGNC	ENSG00000146707	41	0	0	34	9	20.93	-	-	-	A	76247519	G	A	76247519	3	1	228	1	0	0	0	0	1	0	0	0	12321	971	34	4	256	4	POMZP3	7	76247519	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	846220	76247519	82891144	543	14649										
PCLO	0	genome.wustl.edu	37	chr7	82390055	82390055	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtttttttcttgatcaccTttttttgggtagaaatattc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	82390055	82390055	T	-	DEL	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_del	c.15188	p.K5063fs	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	169	0	0	90	45	33.09	-	-	-	-	82390055	T	-	82390055	7	5	228	1	0	1	0	1	0	0	0	0	11656	1609	56	0	248	0	PCLO	7	82390055	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	6142536	82390055	76748608	544	14650										
PCLO	0	genome.wustl.edu	37	chr7	82764243	82764243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggccagggggtgttggtgAcccttttggcattggcttgg	18	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	82764243	82764243	A	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.2623	p.S875P	0.663	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	431	0	0	215	137	38.81	-	-	-	G	82764243	A	G	82764243	3	3	228	1	0	0	0	0	1	0	0	0	11656	275	10	5	12914	5	PCLO	7	82764243	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	374188	82764243	76374420	545	14651										
ABCB1	0	genome.wustl.edu	37	chr7	87144635	87144635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctgcccaccagagccagcGtctggcccttcttcacctcc	8	19	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	87144635	87144635	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.3194	p.T1065M	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	120	0	0	59	43	42.16	-	-	-	A	87144635	G	A	87144635	3	1	228	1	0	0	0	0	1	0	0	0	40	1145	40	1	664	1	ABCB1	7	87144635	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4380392	87144635	71994028	546	14652										
FZD1	0	genome.wustl.edu	37	chr7	90895683	90895683	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcgtgctggcgcccctcttCgtgtacctgtttatcggcac	10	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	90895683	90895683	C	T	SNP	FZD1	ENST00000287934	human	ensembl	69_37n	1	known	silent	c.1488	p.F496	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240	77	0	0	30	17	36.17	-	-	-	T	90895683	C	T	90895683	2	4	228	1	0	0	0	0	0	0	0	1	6177	883	31	1		1	FZD1	7	90895683	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3751048	90895683	68242980	547	14653										
AKAP9	0	genome.wustl.edu	37	chr7	91729156	91729156	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagagcagatcaggtggtaTcgacagacaggagctggtag	16	6	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	91729156	91729156	T	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	nonsense	c.10881	p.Y3627*	0.997	superfamily_YbaB-like	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	192	0	0	124	78	38.61	-	-	-	G	91729156	T	G	91729156	4	3	228	1	0	0	0	0	0	1	0	0	459	1442	50	5	11043	5	AKAP9	7	91729156	Nonsense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	833473	91729156	67409507	548	14654										
PEX1	0	genome.wustl.edu	37	chr7	92147497	92147498	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttgatcaacccaaacaggINSaaaaatggcttttggaaaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	92147497	92147498	-	A	INS	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	frame_shift_ins	c.430_429	p.P143fs	1.000:1.000	pfam_PEX-1N	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	147	0	0	84	54	39.13	-	-	-	A	92147498	-	A	92147497	7	5	228	1	0	1	1	0	0	0	0	0	11809	1174	41	0	3505	0	PEX1	7	92147497	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	418341	92147497	66991166	549	14655										
DYNC1I1	0	genome.wustl.edu	37	chr7	95434081	95434081	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taaaagctgagctagagcgcAaaaagcagcgcttagcacag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	95434081	95434081	A	-	DEL	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	frame_shift_del	c.40	p.K15fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	63	0	0	35	24	40	-	-	-	-	95434081	A	-	95434081	7	5	228	1	0	1	0	1	0	0	0	0	4877	131	5	0	42	0	DYNC1I1	7	95434081	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	3286584	95434081	63704582	550	14656										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97944810	97944810	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatgtggtttgcaaagccacAgtgcttatcaaccagaaagc	9	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	97944810	97944810	A	G	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	missense	c.601	p.C201R	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	269	0	0	212	113	34.77	-	-	-	G	97944810	A	G	97944810	3	3	228	1	0	0	0	0	1	0	0	0	1306	188	7	5	966	5	BAIAP2L1	7	97944810	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2510729	97944810	61193853	551	14657										
ARPC1A	0	genome.wustl.edu	37	chr7	98941935	98941935	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtattgactgggctcccaaGagcgaccgcattgtcacttg	12	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	98941935	98941935	G	A	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	silent	c.189	p.K63	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	55	0	0	39	21	35	-	-	-	A	98941935	G	A	98941935	2	1	228	1	0	0	0	0	0	0	0	1	973	933	33	2		2	ARPC1A	7	98941935	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	997125	98941935	60196728	552	14658										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99110130	99110130	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggcaacacctggagcagtgCaggagtcctgcagcccccat	12	14	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	99110130	99110130	C	T	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	nonsense	c.469	p.Q157*	0.995	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	122	0	0	76	51	40.16	-	-	-	T	99110130	C	T	99110130	4	4	228	1	0	0	0	0	0	1	0	0	17786	711	25	4	475	4	ZKSCAN5	7	99110130	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	168195	99110130	60028533	553	14659										
ACHE	0	genome.wustl.edu	37	chr7	100488897	100488897	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtccagactaacgtactgcTgagcccccgccgtgtacggg	13	14	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	100488897	100488897	T	C	SNP	ACHE	ENST00000302913	human	ensembl	69_37n	-1	known	missense	c.1616	p.Q539R	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085	12	0	0	11	9	45	-	-	-	C	100488897	T	C	100488897	3	2	228	1	0	0	0	0	1	0	0	0	141	1580	55	5	371	5	ACHE	7	100488897	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1378767	100488897	58649766	554	14660										
TRIM56	0	genome.wustl.edu	37	chr7	100732399	100732399	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcactgcctagcggggaccgCgtggctgtcagcgtggcggg	19	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	100732399	100732399	C	T	SNP	TRIM56	ENST00000306085	human	ensembl	69_37n	1	known	silent	c.1806	p.R602	0.139	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871	25	0	0	30	23	41.82	-	-	-	T	100732399	C	T	100732399	2	4	228	1	0	0	0	0	0	0	0	1	16626	755	27	1		1	TRIM56	7	100732399	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	243502	100732399	58406264	555	14661										
EMID2	0	genome.wustl.edu	37	chr7	101200768	101200768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctgccctgcttgggcccgaCcctggacagaagagcgtgga	15	13	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	101200768	101200768	C	T	SNP	EMID2	ENST00000397927	human	ensembl	69_37n	1	known	missense	c.1283	p.T428I	0.614	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EMID2	HGNC	ENSG00000160963	35	0	0	30	16	34.78	-	-	-	T	101200768	C	T	101200768	3	4	228	1	0	0	0	0	1	0	0	0	5129	507	18	4	1327	4	EMID2	7	101200768	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	468369	101200768	57937895	556	14662										
SLC26A4	0	genome.wustl.edu	37	chr7	107336402	107336402	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctgggtgtttacgtgtataGtgtccatcattctggggctg	13	7	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	107336402	107336402	G	T	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.1462	p.V488L	0.534	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	348	0	0	228	160	41.24	-	-	-	T	107336402	G	T	107336402	3	4	228	1	0	0	0	0	1	0	0	0	14608	1029	36	4	1508	4	SLC26A4	7	107336402	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6135634	107336402	51802261	557	14663										
SLC26A3	0	genome.wustl.edu	37	chr7	107420160	107420160	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctgcctatttcagcaaactGcatcagcattccctttaagt	5	12	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	107420160	107420160	G	A	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	nonsense	c.1360	p.Q454*	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	187	1	0.53	70	52	42.62	-	-	-	A	107420160	G	A	107420160	4	1	228	1	0	0	0	0	0	1	0	0	14607	1328	46	4	974	4	SLC26A3	7	107420160	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	83758	107420160	51718503	558	14664										
LAMB1	0	genome.wustl.edu	37	chr7	107618513	107618513	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttacaggcgttgctgtttcGgccttcagcaggtctccaag	11	11	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	107618513	107618513	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	nonsense	c.979	p.R327*	1.000	smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	136	0	0	79	59	42.75	-	-	-	A	107618513	G	A	107618513	4	1	228	1	0	0	0	0	0	1	0	0	8664	1124	39	1	4485	1	LAMB1	7	107618513	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	198353	107618513	51520150	559	14665										
LAMB4	0	genome.wustl.edu	37	chr7	107749691	107749691	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgctgacatgatcaagaccTaaggaagaatccagaaagaa	9	7	1	6			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	107749691	107749691	T	C	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	splice_site	c.329-2	e4-2	1.000	-	-	-	no_errors	LAMB4	HGNC	ENSG00000091128	133	0	0	77	43	35.83	-	-	-	C	107749691	T	C	107749691	5	2	228	1	0	0	0	0	0	0	1	0	8667	1536	53	5	5078	5	LAMB4	7	107749691	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	131178	107749691	51388972	560	14666										
THAP5	0	genome.wustl.edu	37	chr7	108204998	108204998	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttagaattttcagcaggtacAaaaatggcaataacagattc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	108204998	108204998	A	-	DEL	THAP5	ENST00000415914	human	ensembl	69_37n	-1	known	frame_shift_del	c.825	p.F275fs	0.999	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP5	HGNC	ENSG00000177683	166	0	0	95	57	37.01	-	-	-	-	108204998	A	-	108204998	7	5	228	1	0	1	0	1	0	0	0	0	15942	127	5	0	366	0	THAP5	7	108204998	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	455307	108204998	50933665	561	14667										
CAV1	0	genome.wustl.edu	37	chr7	116166610	116166610	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccgttcccatccgggaacAgggcaacatctacaagccca	8	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	116166610	116166610	A	T	SNP	CAV1	ENST00000393470	human	ensembl	69_37n	1	novel	splice_site	c.31-2	e2-2	1.000	-	-	-	no_errors	CAV1	HGNC	ENSG00000105974	50	0	0	31	21	40.38	-	-	-	T	116166610	A	T	116166610	5	4	228	1	0	0	0	0	0	0	1	0	2718	188	7	5	68	5	CAV1	7	116166610	Splice_Site	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	7961612	116166610	42972053	562	14668										
CTTNBP2	0	genome.wustl.edu	37	chr7	117417675	117417677	+	In_Frame_Del	DEL	CTC	CTC	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatgccttcaggactctcttCtcctccatccaagtcaaaga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	117417675	117417677	CTC	-	DEL	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	in_frame_del	c.2668_2666	p.G889in_frame_del	0.019:0.000:0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	156	0	0	84	45	34.88	-	-	-	-	117417677	CTC	-	117417675	7	5	228	1	0	1	0	1	0	0	0	0	4077	922	32	0	2387	0	CTTNBP2	7	117417675	In_Frame_Del	DEL	CTC	TCGA-A8-A09Z-01A-11W-A019-09	1251065	117417675	41720988	563	14669										
WNT16	0	genome.wustl.edu	37	chr7	120979273	120979273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatggctgcaacctcctctgCtgtggccgaggttacaacac	11	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	120979273	120979273	C	T	SNP	WNT16	ENST00000222462	human	ensembl	69_37n	1	known	silent	c.972	p.C324	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	98	0	0	61	50	45.05	-	-	-	T	120979273	C	T	120979273	2	4	228	1	0	0	0	0	0	0	0	1	17482	805	28	4		4	WNT16	7	120979273	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3561598	120979273	38159390	564	14670										
GPR37	0	genome.wustl.edu	37	chr7	124404569	124404569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgccagcgcctctgggaccCttctcttcctcctctgagat	8	16	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	124404569	124404569	C	A	SNP	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	missense	c.462	p.K154N	0.003	NULL	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	75	0	0	42	24	36.36	-	-	-	A	124404569	C	A	124404569	3	1	228	1	0	0	0	0	1	0	0	0	6741	680	24	4	1387	4	GPR37	7	124404569	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3425296	124404569	34734094	565	14671										
GRM8	0	genome.wustl.edu	37	chr7	126173577	126173577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttaggagcacgtaactaagtTcgcgtcctgaagccctcacg	10	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	126173577	126173577	T	C	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	missense	c.1859	p.E620G	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	130	0	0	81	42	34.15	-	-	-	C	126173577	T	C	126173577	3	2	228	1	0	0	0	0	1	0	0	0	6854	1783	62	5	929	5	GRM8	7	126173577	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1769008	126173577	32965086	566	14672										
SND1	0	genome.wustl.edu	37	chr7	127343285	127343285	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttttgctgcagaagccaaaTttttcactgagtcgcgactg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	127343285	127343285	T	-	DEL	SND1	ENST00000354725	human	ensembl	69_37n	1	known	frame_shift_del	c.748	p.F251fs	1.000	pfam_Staphylococcal_nuclease,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Staphylococcal_nuclease	pfam_Staphylococcal_nuclease,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococcal_nuclease	-	no_errors	SND1	HGNC	ENSG00000197157	183	0	0	156	92	36.51	-	-	-	-	127343285	T	-	127343285	7	5	228	1	0	1	0	1	0	0	0	0	14933	1493	52	0	774	0	SND1	7	127343285	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	1169708	127343285	31795378	567	14673										
IRF5	0	genome.wustl.edu	37	chr7	128588315	128588317	+	In_Frame_Del	DEL	TCT	TCT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccccaccacccttcgagaTcttcttctgctttggggaag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	128588315	128588317	TCT	-	DEL	IRF5	ENST00000357234	human	ensembl	69_37n	1	known	in_frame_del	c.1232_1234	p.F413in_frame_del	1.000:0.999:1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	167	0	0	68	41	37.27	-	-	-	-	128588317	TCT	-	128588315	7	5	228	1	0	1	0	1	0	0	0	0	7887	1435	50	0	1258	0	IRF5	7	128588315	In_Frame_Del	DEL	TCT	TCGA-A8-A09Z-01A-11W-A019-09	1245030	128588315	30550348	568	14674										
LRGUK	0	genome.wustl.edu	37	chr7	133863282	133863282	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtgaataaatatgatcctCcccctgaagtggttgcagct							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	133863282	133863282	C	-	DEL	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	frame_shift_del	c.1135	p.P380fs	1.000	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	269	0	0	149	83	35.02	-	-	-	-	133863282	C	-	133863282	7	5	228	1	0	1	0	1	0	0	0	0	9009	855	30	0	1173	0	LRGUK	7	133863282	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	5274967	133863282	25275381	569	14675										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138429870	138429870	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctctgtctgtcaactcacttCcatgtgccgtttctgaacat	6	13	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	138429870	138429870	C	T	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	nonsense	c.1476	p.W492*	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	193	0	0	111	84	43.08	-	-	-	T	138429870	C	T	138429870	4	4	228	1	0	0	0	0	0	1	0	0	1174	856	30	2	1082	2	ATP6V0A4	7	138429870	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4566588	138429870	20708793	570	14676										
UBN2	0	genome.wustl.edu	37	chr7	138946364	138946364	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtagccccctatctgagtcGgggggtgaaaatggaaccac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	138946364	138946364	G	-	DEL	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	frame_shift_del	c.1272	p.G426fs	0.127	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	131	0	0	69	39	35.14	-	-	-	-	138946364	G	-	138946364	7	5	228	1	0	1	0	1	0	0	0	0	16990	1103	39	0	1294	0	UBN2	7	138946364	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	516494	138946364	20192299	571	14677										
OR9A2	0	genome.wustl.edu	37	chr7	142724058	142724058	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagaaatacatgggggactgCagacgtttatccacacagac	10	9	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	142724058	142724058	C	T	SNP	OR9A2	ENST00000350513	human	ensembl	69_37n	-1	known	silent	c.162	p.L54	0.149	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A2	HGNC	ENSG00000179468	356	0	0	163	108	39.85	-	-	-	T	142724058	C	T	142724058	2	4	228	1	0	0	0	0	0	0	0	1	11321	697	25	4		4	OR9A2	7	142724058	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3777694	142724058	16414605	572	14678										
GSTK1	0	genome.wustl.edu	37	chr7	142962294	142962294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccgcccgggggatctactGtcctcccagtcacacccctc	8	21	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	142962294	142962294	G	A	SNP	GSTK1	ENST00000479303	human	ensembl	69_37n	1	known	missense	c.493	p.V165I	0.001	NULL	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	-	no_errors	GSTK1	HGNC	ENSG00000197448	54	0	0	30	13	29.55	-	-	-	A	142962294	G	A	142962294	3	1	228	1	0	0	0	0	1	0	0	0	6887	1377	48	4	507	4	GSTK1	7	142962294	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	238236	142962294	16176369	573	14679										
FAM131B	0	genome.wustl.edu	37	chr7	143056090	143056090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatggctgtgggctttgtcAcatggtccttcatgctccgt	11	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	143056090	143056090	A	G	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.296	p.V99A	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	24	0	0	11	4	26.67	-	-	-	G	143056090	A	G	143056090	3	3	228	1	0	0	0	0	1	0	0	0	5480	159	6	5	798	5	FAM131B	7	143056090	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	93796	143056090	16082573	574	14680										
OR2A14	0	genome.wustl.edu	37	chr7	143826872	143826872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctacttgcgcatcctggccGccatcttgaggatccagtct	9	15	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	143826872	143826872	G	A	SNP	OR2A14	ENST00000408899	human	ensembl	69_37n	1	known	missense	c.667	p.A223T	0.448	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938	222	0	0	125	74	37.19	-	-	-	A	143826872	G	A	143826872	3	1	228	1	0	0	0	0	1	0	0	0	11049	1087	38	1	669	1	OR2A14	7	143826872	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	770782	143826872	15311791	575	14681										
OR2A14	0	genome.wustl.edu	37	chr7	143826903	143826903	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatccagtctggggagggccGcagaaaggccttctccacct	13	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	143826903	143826903	G	A	SNP	OR2A14	ENST00000408899	human	ensembl	69_37n	1	known	missense	c.698	p.R233H	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938	186	0	0	94	74	44.05	-	-	-	A	143826903	G	A	143826903	3	1	228	1	0	0	0	0	1	0	0	0	11049	1087	38	1	700	1	OR2A14	7	143826903	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	31	143826903	15311760	576	14682										
NOBOX	0	genome.wustl.edu	37	chr7	144097353	144097353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcaatctctcggcgtttatcActgtcaggatagtggtcttc	10	10	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	144097353	144097353	A	G	SNP	NOBOX	ENST00000467773	human	ensembl	69_37n	-1	known	silent	c.897	p.S299	0.771	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	NOBOX	HGNC	ENSG00000106410	64	0	0	49	31	38.75	-	-	-	G	144097353	A	G	144097353	2	3	228	1	0	0	0	0	0	0	0	1	10584	156	6	5		5	NOBOX	7	144097353	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	270450	144097353	15041310	577	14683										
ZNF425	0	genome.wustl.edu	37	chr7	148800869	148800869	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggaggaagcctttgccacaCtcgggacactggaagggcct	14	11	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	148800869	148800869	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	silent	c.2094	p.E698	0.117	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	139	0	0	95	52	35.37	-	-	-	T	148800869	C	T	148800869	2	4	228	1	0	0	0	0	0	0	0	1	17995	564	20	4		4	ZNF425	7	148800869	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4703516	148800869	10337794	578	14684										
REPIN1	0	genome.wustl.edu	37	chr7	150069796	150069796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggcgagaagccctacgtctGccccgactgcggcaaagcct	12	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	150069796	150069796	G	A	SNP	REPIN1	ENST00000489432	human	ensembl	69_37n	1	known	missense	c.1637	p.C546Y	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022	15	0	0	4	7	63.64	-	-	-	A	150069796	G	A	150069796	3	1	228	1	0	0	0	0	1	0	0	0	13310	1319	46	4	1643	4	REPIN1	7	150069796	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1268927	150069796	9068867	579	14685										
ABP1	0	genome.wustl.edu	37	chr7	150553665	150553665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcaggggtgttttcagaccTaagcaaccaagagctgaagg	14	8	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	150553665	150553665	T	C	SNP	ABP1	ENST00000416793	human	ensembl	69_37n	1	known	missense	c.107	p.L36P	1.000	superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	ABP1	HGNC	ENSG00000002726	74	0	0	49	26	34.67	-	-	-	C	150553665	T	C	150553665	3	2	228	1	0	0	0	0	1	0	0	0	98	1522	53	5	109	5	ABP1	7	150553665	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	483869	150553665	8584998	580	14686										
MLL3	0	genome.wustl.edu	37	chr7	151879634	151879634	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcacctgttcaagtttctGtgtggcttcaattttagctt	7	8	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	151879634	151879634	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5311	p.Q1771*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	552	0	0	284	176	38.26	-	-	-	A	151879634	G	A	151879634	4	1	228	1	0	0	0	0	0	1	0	0	9693	1386	48	4	9520	4	MLL3	7	151879634	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1325969	151879634	7259029	581	14687										
RNF32	0	genome.wustl.edu	37	chr7	156469233	156469233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctcctgtcctgctcacatGtgttccaccatgcgtgtctg	8	16	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	7	156469233	156469233	G	A	SNP	RNF32	ENST00000317955	human	ensembl	69_37n	1	known	missense	c.973	p.V325M	0.421	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982	50	0	0	20	23	53.49	-	-	-	A	156469233	G	A	156469233	3	1	228	1	0	0	0	0	1	0	0	0	13574	1377	48	4	1003	4	RNF32	7	156469233	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4589599	156469233	2669430	582	14688										
DLGAP2	0	genome.wustl.edu	37	chr8	1581210	1581210	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccaccatcaggtcaacagCaggtaaggggacgccatttt	10	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	1581210	1581210	C	T	SNP	DLGAP2	ENST00000520901	human	ensembl	69_37n	1	known	nonsense	c.1618	p.Q540*	1.000	NULL	pfam_GKAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DLGAP2	HGNC	ENSG00000198010	120	0	0	52	26	32.91	-	-	-	T	1581210	C	T	1581210	4	4	228	1	0	0	0	0	0	1	0	0	4596	710	25	4	1582	4	DLGAP2	8	1581210	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09		1581210	144782812	583	14689										
ARHGEF10	0	genome.wustl.edu	37	chr8	1808261	1808261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtacttggtgcctgtaccctGcggctatgcggtgccctcca	12	14	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	1808261	1808261	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	missense	c.464	p.C155Y	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	69	0	0	51	35	40.7	-	-	-	A	1808261	G	A	1808261	3	1	228	1	0	0	0	0	1	0	0	0	896	1319	46	4	402	4	ARHGEF10	8	1808261	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	227051	1808261	144555761	584	14690										
CSMD1	0	genome.wustl.edu	37	chr8	2807843	2807843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaagctttcaggagtaagtgGgcctcctccttcttgtaaat	9	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	2807843	2807843	G	A	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.8431	p.P2811S	0.989	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	174	0	0	87	65	42.76	-	-	-	A	2807843	G	A	2807843	3	1	228	1	0	0	0	0	1	0	0	0	3976	1219	43	4	486	4	CSMD1	8	2807843	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	999582	2807843	143556179	585	14691										
MCPH1	0	genome.wustl.edu	37	chr8	6335115	6335115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcttgtttgaaatctctagCcaacaagaacattagtcatg	6	8	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	6335115	6335115	C	T	SNP	MCPH1	ENST00000344683	human	ensembl	69_37n	1	known	missense	c.1936	p.P646S	1.000	smart_BRCT_dom	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	MCPH1	HGNC	ENSG00000147316	201	0	0	113	54	32.34	-	-	-	T	6335115	C	T	6335115	3	4	228	1	0	0	0	0	1	0	0	0	9469	753	26	4	1982	4	MCPH1	8	6335115	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3527272	6335115	140028907	586	14692										
RP1L1	0	genome.wustl.edu	37	chr8	10467817	10467817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggcacaagcgcaggctcggGcgttcaagaaggttgggaaa	16	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	10467817	10467817	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.3791	p.A1264V	0.001	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	76	0	0	42	29	40.85	-	-	-	A	10467817	G	A	10467817	3	1	228	1	0	0	0	0	1	0	0	0	13619	1203	42	4	3415	4	RP1L1	8	10467817	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4132702	10467817	135896205	587	14693										
FDFT1	0	genome.wustl.edu	37	chr8	11679295	11679298	+	Frame_Shift_Del	DEL	CAAA	CAAA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaatctggctgagaaatacCaaacagtgattgccgacatt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CAAA	CAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	11679295	11679298	CAAA	-	DEL	FDFT1	ENST00000220584	human	ensembl	69_37n	1	known	frame_shift_del	c.418_421	p.T141fs	1.000:1.000:0.999:0.999	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	-	no_errors	FDFT1	HGNC	ENSG00000079459	189	0	0	101	62	37.58	-	-	-	-	11679298	CAAA	-	11679295	7	5	228	1	0	1	0	1	0	0	0	0	5848	595	21	0	432	0	FDFT1	8	11679295	Frame_Shift_Del	DEL	CAAA	TCGA-A8-A09Z-01A-11W-A019-09	1211478	11679295	134684727	588	14694										
CTSB	0	genome.wustl.edu	37	chr8	11708390	11708390	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttacccagcaggagccacaGgagccctggtctctgatctc	10	15	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	11708390	11708390	G	T	SNP	CTSB	ENST00000353047	human	ensembl	69_37n	-1	known	silent	c.312	p.S104	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733	23	0	0	18	9	33.33	-	-	-	T	11708390	G	T	11708390	2	4	228	1	0	0	0	0	0	0	0	1	4062	987	35	4		4	CTSB	8	11708390	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	29095	11708390	134655632	589	14695										
PCM1	0	genome.wustl.edu	37	chr8	17810630	17810630	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgctacaggaaaagaaacAaaaaatggacaaattgcttg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	17810630	17810630	A	-	DEL	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	frame_shift_del	c.1223	p.M410fs	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	53	0	0	24	12	33.33	-	-	-	-	17810630	A	-	17810630	7	5	228	1	0	1	0	1	0	0	0	0	11657	130	5	0	1249	0	PCM1	8	17810630	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	6102240	17810630	128553392	590	14696										
BMP1	0	genome.wustl.edu	37	chr8	22033756	22033756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatcccgtagccggcgggcGgcgacgtcccgaccagagcg	16	15	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	22033756	22033756	G	A	SNP	BMP1	ENST00000306385	human	ensembl	69_37n	1	known	silent	c.363	p.A121	0.924	pirsf_BMP_1/tolloid-like	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	45	0	0	21	14	40	-	-	-	A	22033756	G	A	22033756	2	1	228	1	0	0	0	0	0	0	0	1	1461	1103	39	1		1	BMP1	8	22033756	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4223126	22033756	124330266	591	14697										
SLC39A14	0	genome.wustl.edu	37	chr8	22275339	22275339	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgttcttgtatatttctctGgctgatatggtaagtgttcc	9	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	22275339	22275339	G	T	SNP	SLC39A14	ENST00000359741	human	ensembl	69_37n	1	known	silent	c.1323	p.L441	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635	123	0	0	67	44	39.64	-	-	-	T	22275339	G	T	22275339	2	4	228	1	0	0	0	0	0	0	0	1	14706	1335	47	4		4	SLC39A14	8	22275339	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	241583	22275339	124088683	592	14698										
ENTPD4	0	genome.wustl.edu	37	chr8	23292099	23292099	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgggcagccttggggcaggGgcttcctcaggccggctctc	17	13	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	23292099	23292099	G	A	SNP	ENTPD4	ENST00000522913	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ENTPD4	HGNC	ENSG00000197217	53	0	0	21	25	54.35	-	-	-	A	23292099	G	A	23292099	1	1	228	0	1	0	0	0	0	0	0	0	5178	1247	43	4		4	ENTPD4	8	23292099	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1016760	23292099	123071923	593	14699										
NKX3-1	0	genome.wustl.edu	37	chr8	23538901	23538901	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgaggagagctgctttcgctTagtcttatagcgtctgttct	11	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	23538901	23538901	T	C	SNP	NKX3-1	ENST00000380871	human	ensembl	69_37n	-1	known	missense	c.538	p.K180E	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX3-1	HGNC	ENSG00000167034	187	0	0	145	74	33.79	-	-	-	C	23538901	T	C	23538901	3	2	228	1	0	0	0	0	1	0	0	0	10527	1763	61	5	170	5	NKX3-1	8	23538901	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	246802	23538901	122825121	594	14700										
EXTL3	0	genome.wustl.edu	37	chr8	28595121	28595121	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccatcagtcctggctctacAactccaactactcctgtgag	6	16	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	28595121	28595121	A	G	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	missense	c.2362	p.N788D	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	366	0	0	192	148	43.53	-	-	-	G	28595121	A	G	28595121	3	3	228	1	0	0	0	0	1	0	0	0	5364	130	5	5	2372	5	EXTL3	8	28595121	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5056220	28595121	117768901	595	14701										
UBXN8	0	genome.wustl.edu	37	chr8	30614352	30614352	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcaaagagccagaacttgcCtaaacctttaactgaatttc	6	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	30614352	30614352	C	A	SNP	UBXN8	ENST00000265616	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.665	-	-	-	no_errors	UBXN8	HGNC	ENSG00000104691	55	0	0	40	20	33.33	-	-	-	A	30614352	C	A	30614352	1	1	228	0	1	0	0	0	0	0	0	0	17016	681	24	4		4	UBXN8	8	30614352	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2019231	30614352	115749670	596	14702										
FUT10	0	genome.wustl.edu	37	chr8	33318980	33318980	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atccgcaccatgctgccctgCcctgggtgactgacagaggg	13	14	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	33318980	33318980	C	T	SNP	FUT10	ENST00000520503	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	FUT10	HGNC	ENSG00000172728	32	0	0	34	15	30.61	-	-	-	T	33318980	C	T	33318980	1	4	228	0	1	0	0	0	0	0	0	0	6151	754	26	4		4	FUT10	8	33318980	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2704628	33318980	113045042	597	14703										
CHRNB3	0	genome.wustl.edu	37	chr8	42587444	42587445	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccacgtaccaccccatggINSccccctgggttaagaggctc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	42587444	42587445	-	C	INS	CHRNB3	ENST00000289957	human	ensembl	69_37n	1	known	frame_shift_ins	c.994_995	p.W334fs	1.000:1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432	230	0	0	142	76	34.86	-	-	-	C	42587445	-	C	42587444	7	5	228	1	0	1	1	0	0	0	0	0	3421	1203	42	0	1012	0	CHRNB3	8	42587444	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	9268464	42587444	103776578	598	14704										
ST18	0	genome.wustl.edu	37	chr8	53038635	53038635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagttgctttgagcttgatgGtcatgagttcttcagaaacc	10	8	3	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	53038635	53038635	G	A	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2732	p.T911I	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	158	0	0	89	63	41.18	-	-	-	A	53038635	G	A	53038635	3	1	228	1	0	0	0	0	1	0	0	0	15303	1261	44	4	427	4	ST18	8	53038635	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	10451191	53038635	93325387	599	14705										
TMEM68	0	genome.wustl.edu	37	chr8	56675271	56675271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccataaattatgagagtagGcttctttcaatacattcttt	5	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	56675271	56675271	G	A	SNP	TMEM68	ENST00000434581	human	ensembl	69_37n	-1	known	missense	c.248	p.A83V	0.986	NULL	pfam_Acyltransferase	-	no_errors	TMEM68	HGNC	ENSG00000167904	347	0	0	194	145	42.77	-	-	-	A	56675271	G	A	56675271	3	1	228	1	0	0	0	0	1	0	0	0	16292	1203	42	4	541	4	TMEM68	8	56675271	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3636636	56675271	89688751	600	14706										
TGS1	0	genome.wustl.edu	37	chr8	56711474	56711474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtcatcttaaaatttaaggTagaaaaattcctcacatggg	7	6	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	56711474	56711474	T	C	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.1544	p.V515A	1.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	64	0	0	48	22	30.99	-	-	-	C	56711474	T	C	56711474	3	2	228	1	0	0	0	0	1	0	0	0	15932	1652	57	5	1574	5	TGS1	8	56711474	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	36203	56711474	89652548	601	14707										
CHD7	0	genome.wustl.edu	37	chr8	61654214	61654214	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attttgatcactataatcagTatgaacaacaaaagatgcat	5	6	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	61654214	61654214	T	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.223	p.Y75H	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	76	0	0	40	25	38.46	-	-	-	C	61654214	T	C	61654214	3	2	228	1	0	0	0	0	1	0	0	0	3359	1638	57	5	225	5	CHD7	8	61654214	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4942740	61654214	84709808	602	14708										
CYP7B1	0	genome.wustl.edu	37	chr8	65537056	65537056	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttcaggaccactccaagatAaggaagccaaccttttatca	7	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	65537056	65537056	A	G	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	missense	c.163	p.Y55H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	514	0	0	305	157	33.98	-	-	-	G	65537056	A	G	65537056	3	3	228	1	0	0	0	0	1	0	0	0	4228	362	13	5	1377	5	CYP7B1	8	65537056	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3882842	65537056	80826966	603	14709										
TRIM55	0	genome.wustl.edu	37	chr8	67064728	67064728	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgttcaaacagagtttccaGgagaagatgaaaacccagaa	9	7	1	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	67064728	67064728	G	T	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	nonsense	c.1102	p.G368*	0.972	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	300	0	0	133	108	44.81	-	-	-	T	67064728	G	T	67064728	4	4	228	1	0	0	0	0	0	1	0	0	16625	1001	35	4	1132	4	TRIM55	8	67064728	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1527672	67064728	79299294	604	14710										
VCPIP1	0	genome.wustl.edu	37	chr8	67577518	67577518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagaattagttctgtctccaTccaaatacacaatagaccca	4	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	67577518	67577518	T	C	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.1676	p.D559G	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	293	0	0	166	104	38.52	-	-	-	C	67577518	T	C	67577518	3	2	228	1	0	0	0	0	1	0	0	0	17238	1435	50	5	2004	5	VCPIP1	8	67577518	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	512790	67577518	78786504	605	14711										
CSPP1	0	genome.wustl.edu	37	chr8	68105743	68105743	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagatggtctctctctaaaAtctatatccagtgtaaatgt	6	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	68105743	68105743	A	T	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.3360	p.K1120N	0.993	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	180	0	0	69	65	48.51	-	-	-	T	68105743	A	T	68105743	3	4	228	1	0	0	0	0	1	0	0	0	3994	98	4	5	3583	5	CSPP1	8	68105743	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	528225	68105743	78258279	606	14712										
ARFGEF1	0	genome.wustl.edu	37	chr8	68140283	68140284	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtaatatgatatttctactaINSttttttgtagactaaacatt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	68140283	68140284	-	T	INS	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3506_3505	p.I1169fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	204	1	0.49	108	68	38.64	-	-	-	T	68140284	-	T	68140283	7	5	228	1	0	1	1	0	0	0	0	0	854	449	16	0	2103	0	ARFGEF1	8	68140283	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	34540	68140283	78223739	607	14713										
CPA6	0	genome.wustl.edu	37	chr8	68430186	68430186	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatgttggcttcctgtaagaAggctaacagggctcgggaac	14	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	68430186	68430186	A	G	SNP	CPA6	ENST00000297770	human	ensembl	69_37n	-1	known	missense	c.289	p.F97L	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078	204	0	0	77	60	43.48	-	-	-	G	68430186	A	G	68430186	3	3	228	1	0	0	0	0	1	0	0	0	3824	72	3	5	1060	5	CPA6	8	68430186	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	289903	68430186	77933836	608	14714										
EYA1	0	genome.wustl.edu	37	chr8	72127863	72127863	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcaccgggagtgaatgagCgagagtgctttcagggccag	15	10	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	72127863	72127863	C	T	SNP	EYA1	ENST00000340726	human	ensembl	69_37n	-1	known	silent	c.1461	p.S487	0.008	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313	128	1	0.77	47	44	48.35	-	-	-	T	72127863	C	T	72127863	2	4	228	1	0	0	0	0	0	0	0	1	5365	755	27	1		1	EYA1	8	72127863	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3697677	72127863	74236159	609	14715										
ZFHX4	0	genome.wustl.edu	37	chr8	77616607	77616607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttcccagtttacagaaatAcatggaacaccactgcccta	5	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	77616607	77616607	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.284	p.Y95C	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	376	0	0	191	160	45.58	-	-	-	G	77616607	A	G	77616607	3	3	228	1	0	0	0	0	1	0	0	0	17731	391	14	5	286	5	ZFHX4	8	77616607	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5488744	77616607	68747415	610	14716										
ZFHX4	0	genome.wustl.edu	37	chr8	77775660	77775660	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaagttgtaggtgaaacacAtgtcgatcctattcagttgc	9	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	77775660	77775660	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.9710	p.H3237R	0.005	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	373	0	0	240	146	37.82	-	-	-	G	77775660	A	G	77775660	3	3	228	1	0	0	0	0	1	0	0	0	17731	217	8	5	9748	5	ZFHX4	8	77775660	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	159053	77775660	68588362	611	14717										
MATN2	0	genome.wustl.edu	37	chr8	99019348	99019348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcaggagtggaccactgtgCacagcaggaccatggctgtg	15	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	99019348	99019348	C	T	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.1343	p.A448V	0.979	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	32	0	0	19	16	45.71	-	-	-	T	99019348	C	T	99019348	3	4	228	1	0	0	0	0	1	0	0	0	9405	710	25	4	1373	4	MATN2	8	99019348	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	21243688	99019348	47344674	612	14718										
POP1	0	genome.wustl.edu	37	chr8	99169885	99169885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aactgtcagcctggtgtgggCccagttctgaggatagtcgg	15	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	99169885	99169885	C	T	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	missense	c.2461	p.P821S	0.997	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	247	0	0	163	82	33.33	-	-	-	T	99169885	C	T	99169885	3	4	228	1	0	0	0	0	1	0	0	0	12325	739	26	4	2519	4	POP1	8	99169885	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	150537	99169885	47194137	613	14719										
ABRA	0	genome.wustl.edu	37	chr8	107781857	107781857	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctgtcctctgtgtctacgcTgtcactcctccatgtgggct	10	14	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	107781857	107781857	T	C	SNP	ABRA	ENST00000311955	human	ensembl	69_37n	-1	known	missense	c.562	p.S188G	1.000	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	308	1	0.32	198	115	36.74	-	-	-	C	107781857	T	C	107781857	3	2	228	1	0	0	0	0	1	0	0	0	100	1580	55	5	591	5	ABRA	8	107781857	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	8611972	107781857	38582165	614	14720										
TMEM74	0	genome.wustl.edu	37	chr8	109797050	109797051	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactttccgttccgctgttaINStttggttgttccctgagtgg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	109797050	109797051	-	T	INS	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.278_277	p.I93fs	0.000:0.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	181	0	0	92	55	37.41	-	-	-	T	109797051	-	T	109797050	7	5	228	1	0	1	1	0	0	0	0	0	16297	449	16	0	643	0	TMEM74	8	109797050	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	2015193	109797050	36566972	615	14721										
CSMD3	0	genome.wustl.edu	37	chr8	113276019	113276019	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agccttccattagagatctgGggaggagttgggcaggtaac	15	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	113276019	113276019	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.9711	p.P3237	0.991	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	287	0	0	124	82	39.81	-	-	-	A	113276019	G	A	113276019	2	1	228	1	0	0	0	0	0	0	0	1	3978	1219	43	4		4	CSMD3	8	113276019	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3478969	113276019	33088003	616	14722										
TRPS1	0	genome.wustl.edu	37	chr8	116616633	116616635	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctcccttgctggagaagtcCttctttttagccccactcga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	116616633	116616635	CTT	-	DEL	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	in_frame_del	c.1563_1561	p.K521in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	199	0	0	101	63	36.84	-	-	-	-	116616635	CTT	-	116616633	7	5	228	1	0	1	0	1	0	0	0	0	16689	680	24	0	2337	0	TRPS1	8	116616633	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	3340614	116616633	29747389	617	14723										
ASAP1	0	genome.wustl.edu	37	chr8	131088594	131088594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtaaaaatgatagatcttacCtttctgaggtagtttaggaa	9	4	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	131088594	131088594	C	T	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.2701	p.V901M	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	171	0	0	124	96	43.64	-	-	-	T	131088594	C	T	131088594	3	4	228	1	0	0	0	0	1	0	0	0	1014	695	24	4	704	4	ASAP1	8	131088594	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	14471961	131088594	15275428	618	14724										
TG	0	genome.wustl.edu	37	chr8	133918958	133918958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggtgtccgctgccattcaaCgcgtcggaggtggttggtgg	17	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	133918958	133918958	C	T	SNP	TG	ENST00000518505	human	ensembl	69_37n	1	novel	missense	c.491	p.T164M	0.000	NULL	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	pseudogene:no_stop_codon	TG	HGNC	ENSG00000042832	54	0	0	44	23	34.33	-	-	-	T	133918958	C	T	133918958	3	4	228	1	0	0	0	0	1	0	0	0	15908	535	19	1	3726	1	TG	8	133918958	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2830364	133918958	12445064	619	14725										
ST3GAL1	0	genome.wustl.edu	37	chr8	134474198	134474199	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcccttgcagccagttgtcINSaaagacatacttgatgaagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	134474198	134474199	-	A	INS	ST3GAL1	ENST00000319914	human	ensembl	69_37n	-1	known	frame_shift_ins	c.769_768	p.D256fs	1.000:0.813	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513	73	0	0	61	32	34.41	-	-	-	A	134474199	-	A	134474198	7	5	228	1	0	1	1	0	0	0	0	0	15305	826	29	0	261	0	ST3GAL1	8	134474198	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	555240	134474198	11889824	620	14726										
FAM135B	0	genome.wustl.edu	37	chr8	139164906	139164906	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttgttttgtctgaagagatGgcattttggtggcttccacc	12	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	139164906	139164906	G	T	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	silent	c.1812	p.A604	0.006	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	317	0	0	164	113	40.79	-	-	-	T	139164906	G	T	139164906	2	4	228	1	0	0	0	0	0	0	0	1	5489	1335	47	4		4	FAM135B	8	139164906	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4690708	139164906	7199116	621	14727										
DENND3	0	genome.wustl.edu	37	chr8	142195348	142195348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcatggaccatccaccagCactcctttaaagtgggcact	7	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	142195348	142195348	C	T	SNP	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	missense	c.2815	p.H939Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	161	0	0	72	36	33.33	-	-	-	T	142195348	C	T	142195348	3	4	228	1	0	0	0	0	1	0	0	0	4468	710	25	4	2881	4	DENND3	8	142195348	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3030442	142195348	4168674	622	14728										
ZNF251	0	genome.wustl.edu	37	chr8	145947363	145947363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atccaaaggatttctcaccaGtgtgaactgtccagcgcaga	9	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	8	145947363	145947363	G	A	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	missense	c.1682	p.T561I	0.999	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	198	0	0	115	92	44.44	-	-	-	A	145947363	G	A	145947363	3	1	228	1	0	0	0	0	1	0	0	0	17892	1029	36	4	337	4	ZNF251	8	145947363	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3752015	145947363	416659	623	14729										
SMARCA2	0	genome.wustl.edu	37	chr9	2060958	2060960	+	In_Frame_Del	DEL	AGA	AGA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcaagcccaggcagccaaagAgaagaagaagaggaggagga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	2060958	2060960	AGA	-	DEL	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	in_frame_del	c.1664_1666	p.K558in_frame_del	1.000:0.993:1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	47	0	0	55	10	15.15	-	-	-	-	2060960	AGA	-	2060958	7	5	228	1	0	1	0	1	0	0	0	0	14858	304	11	0	1694	0	SMARCA2	9	2060958	In_Frame_Del	DEL	AGA	TCGA-A8-A09Z-01A-11W-A019-09		2060958	139152473	624	14730										
VLDLR	0	genome.wustl.edu	37	chr9	2652920	2652920	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatagacattggtagacacAgtgcttctgttggacacacg	10	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	2652920	2652920	A	G	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.2557	p.S853G	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	180	0	0	68	58	46.03	-	-	-	G	2652920	A	G	2652920	3	3	228	1	0	0	0	0	1	0	0	0	17271	188	7	5	2627	5	VLDLR	9	2652920	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	591962	2652920	138560511	625	14731										
RLN2	0	genome.wustl.edu	37	chr9	5300144	5300144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggtacaaccaacatggcaaCatttattagccaatgcactg	7	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	5300144	5300144	C	T	SNP	RLN2	ENST00000381627	human	ensembl	69_37n	-1	known	missense	c.512	p.C171Y	0.521	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Insulin_family	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN2	HGNC	ENSG00000107014	385	0	0	201	113	35.99	-	-	-	T	5300144	C	T	5300144	3	4	228	1	0	0	0	0	1	0	0	0	13478	478	17	4	49	4	RLN2	9	5300144	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2647224	5300144	135913287	626	14732										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18888006	18888006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttgctcagaatgaggcagGggtgctcatgcagaaggcat	14	9	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	18888006	18888006	G	T	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	1	known	missense	c.530	p.G177V	0.985	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	86	0	0	44	37	45.68	-	-	-	T	18888006	G	T	18888006	3	4	228	1	0	0	0	0	1	0	0	0	274	1232	43	4	4525	4	ADAMTSL1	9	18888006	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	13587862	18888006	122325425	627	14733										
RPS6	0	genome.wustl.edu	37	chr9	19378446	19378446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaaaagtttgcggattctgCtagctcttttggggcccagg	13	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	19378446	19378446	C	T	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	missense	c.416	p.S139N	1.000	pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	113	0	0	80	52	39.39	-	-	-	T	19378446	C	T	19378446	3	4	228	1	0	0	0	0	1	0	0	0	13735	797	28	4	345	4	RPS6	9	19378446	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	490440	19378446	121834985	628	14734										
IFNA8	0	genome.wustl.edu	37	chr9	21409272	21409272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcctcagactcacagcctgGgtaacaggagggccttgata	12	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	21409272	21409272	G	A	SNP	IFNA8	ENST00000380205	human	ensembl	69_37n	1	known	missense	c.97	p.G33S	0.001	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA8	HGNC	ENSG00000120242	182	1	0.55	115	73	38.83	-	-	-	A	21409272	G	A	21409272	3	1	228	1	0	0	0	0	1	0	0	0	7597	1232	43	4	99	4	IFNA8	9	21409272	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2030826	21409272	119804159	629	14735										
TEK	0	genome.wustl.edu	37	chr9	27197589	27197589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatctcactgcttggacccTtagtgacagtaagtaattca	8	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	27197589	27197589	T	C	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.1901	p.L634P	0.997	superfamily_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	136	0	0	66	54	45	-	-	-	C	27197589	T	C	27197589	3	2	228	1	0	0	0	0	1	0	0	0	15846	1609	56	5	1947	5	TEK	9	27197589	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5788317	27197589	114015842	630	14736										
NDUFB6	0	genome.wustl.edu	37	chr9	32571007	32571007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taatccagacaggtacaagtAcatgagtgaaaacaaagata	8	6	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	32571007	32571007	A	G	SNP	NDUFB6	ENST00000379847	human	ensembl	69_37n	-1	known	missense	c.224	p.V75A	0.918	pfam_NADH_DH_b-subcmplx_su6	pfam_NADH_DH_b-subcmplx_su6	-	no_errors	NDUFB6	HGNC	ENSG00000165264	70	0	0	31	23	42.59	-	-	-	G	32571007	A	G	32571007	3	3	228	1	0	0	0	0	1	0	0	0	10357	391	14	5	174	5	NDUFB6	9	32571007	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5373418	32571007	108642424	631	14737										
TAF1L	0	genome.wustl.edu	37	chr9	32633550	32633550	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaaacaactctccaccaccTgaggcttgcctctcttgttc	5	15	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	32633550	32633550	T	C	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.2028	p.S676	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	295	0	0	229	117	33.82	-	-	-	C	32633550	T	C	32633550	2	2	228	1	0	0	0	0	0	0	0	1	15615	1567	55	5		5	TAF1L	9	32633550	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	62543	32633550	108579881	632	14738										
DNAI1	0	genome.wustl.edu	37	chr9	34497159	34497159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctgctaagatcatggagcGgatggtcaaccagaatacat	11	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	34497159	34497159	G	A	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	missense	c.863	p.R288Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	154	0	0	64	50	43.86	-	-	-	A	34497159	G	A	34497159	3	1	228	1	0	0	0	0	1	0	0	0	4644	1116	39	1	901	1	DNAI1	9	34497159	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1863609	34497159	106716272	633	14739										
TPM2	0	genome.wustl.edu	37	chr9	35684275	35684275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgatggttttctccaactttGccacagacctctcggcaaac	7	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	35684275	35684275	G	A	SNP	TPM2	ENST00000378300	human	ensembl	69_37n	-1	known	missense	c.740	p.A247V	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467	96	0	0	90	52	36.62	-	-	-	A	35684275	G	A	35684275	3	1	228	1	0	0	0	0	1	0	0	0	16502	1319	46	4	209	4	TPM2	9	35684275	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1187116	35684275	105529156	634	14740										
GBA2	0	genome.wustl.edu	37	chr9	35740052	35740052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctcttcccactctgcgtatCggcacagtgcatagtggctg	10	13	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	35740052	35740052	C	T	SNP	GBA2	ENST00000545786	human	ensembl	69_37n	-1	known	missense	c.1370	p.R457Q	0.001	pfam_GBA2_N,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	153	0	0	95	68	41.72	-	-	-	T	35740052	C	T	35740052	3	4	228	1	0	0	0	0	1	0	0	0	6317	884	31	1	1471	1	GBA2	9	35740052	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	55777	35740052	105473379	635	14741										
NPR2	0	genome.wustl.edu	37	chr9	35802729	35802729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattccatgtcacttaccagGatattctagaaaatgacagc	6	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	35802729	35802729	G	T	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.1816	p.D606Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	329	0	0	180	108	37.5	-	-	-	T	35802729	G	T	35802729	3	4	228	1	0	0	0	0	1	0	0	0	10668	1188	41	2	1862	2	NPR2	9	35802729	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	62677	35802729	105410702	636	14742										
CCIN	0	genome.wustl.edu	37	chr9	36169591	36169591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaagagtactgggacatggCcctgagtgtggacaaccacg	13	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	36169591	36169591	C	T	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.92	p.A31V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	134	0	0	98	64	39.51	-	-	-	T	36169591	C	T	36169591	3	4	228	1	0	0	0	0	1	0	0	0	2905	739	26	4	94	4	CCIN	9	36169591	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	366862	36169591	105043840	637	14743										
ZBTB5	0	genome.wustl.edu	37	chr9	37441224	37441225	+	Frame_Shift_Del	DEL	CT	CT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaacaaatagggggcctcaCtctccagcctgcagtcacta							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	37441224	37441225	CT	-	DEL	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	frame_shift_del	c.1325_1324	p.S442fs	0.214:0.280	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	62	0	0	51	27	34.62	-	-	-	-	37441225	CT	-	37441224	7	5	228	1	0	1	0	1	0	0	0	0	17647	565	20	0	712	0	ZBTB5	9	37441224	Frame_Shift_Del	DEL	CT	TCGA-A8-A09Z-01A-11W-A019-09	1271633	37441224	103772207	638	14744										
FAM75A6	0	genome.wustl.edu	37	chr9	43625140	43625140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactgttttttggctctcagCagtgactggtgctggcttgc	12	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	43625140	43625140	C	T	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.3547	p.A1183T	0.025	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	182	0	0	37	128	77.58	-	-	-	T	43625140	C	T	43625140	3	4	228	1	0	0	0	0	1	0	0	0	5667	710	25	4	488	4	FAM75A6	9	43625140	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6183916	43625140	97588291	639	14745										
PIP5K1B	0	genome.wustl.edu	37	chr9	71509427	71509427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtataagcgaagagcatcccGtaaagagagagagaaatcca	11	7	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	71509427	71509427	G	A	SNP	PIP5K1B	ENST00000478500	human	ensembl	69_37n	1	known	missense	c.764	p.R255H	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	272	0	0	153	98	39.04	-	-	-	A	71509427	G	A	71509427	3	1	228	1	0	0	0	0	1	0	0	0	12014	1145	40	1	662	1	PIP5K1B	9	71509427	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	27884287	71509427	69704004	640	14746										
PTAR1	0	genome.wustl.edu	37	chr9	72333512	72333513	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtgcaagtcactcaaagtINSccccccagggctgtctgcag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	72333512	72333513	-	C	INS	PTAR1	ENST00000377200	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.799_798	p.T266fs	0.056:0.000	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647	85	0	0	63	21	25	-	-	-	C	72333513	-	C	72333512	7	5	228	1	0	1	1	0	0	0	0	0	12804	1682	58	0		0	PTAR1	9	72333512	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	824085	72333512	68879919	641	14747										
PRUNE2	0	genome.wustl.edu	37	chr9	79270372	79270372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcagcactgggactcagcaCgccctcttcaaaggggatgt	12	12	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	79270372	79270372	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.7246	p.V2416M	0.779	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	49	0	0	37	10	21.28	-	-	-	T	79270372	C	T	79270372	3	4	228	1	0	0	0	0	1	0	0	0	12721	536	19	1	983	1	PRUNE2	9	79270372	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6936860	79270372	61943059	642	14748										
RASEF	0	genome.wustl.edu	37	chr9	85630787	85630787	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catactgacgtctgaggtcaCtgagggcttcctcagctttg	11	11	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	85630787	85630787	C	A	SNP	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	missense	c.698	p.S233I	0.978	superfamily_Vinculin/catenin	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	338	0	0	200	142	41.52	-	-	-	A	85630787	C	A	85630787	3	1	228	1	0	0	0	0	1	0	0	0	13151	565	20	4	1580	4	RASEF	9	85630787	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6360415	85630787	55582644	643	14749										
NAA35	0	genome.wustl.edu	37	chr9	88631578	88631578	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtagtagtaaaaaaacaaagAaaaaaaagaaaggtgctgtg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	88631578	88631578	A	-	DEL	NAA35	ENST00000361671	human	ensembl	69_37n	1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040	131	0	0	72	48	39.02	-	-	-	-	88631578	A	-	88631578	7	5	228	1	0	1	0	1	0	0	0	0	10195	247	9	0	1759	0	NAA35	9	88631578	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	3000791	88631578	52581853	644	14750										
ZCCHC6	0	genome.wustl.edu	37	chr9	88937823	88937823	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gataagtttactgaattcatAaaaaaaatcagactgatcca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	88937823	88937823	A	-	DEL	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	frame_shift_del	c.2842	p.Y948fs	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	136	0	0	99	44	30.34	-	-	-	-	88937823	A	-	88937823	7	5	228	1	0	1	0	1	0	0	0	0	17688	362	13	0	1705	0	ZCCHC6	9	88937823	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	306245	88937823	52275608	645	14751										
CTSL1	0	genome.wustl.edu	37	chr9	90344617	90344617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatttctgttgctattgatGcaggtcatgagtccttcctg	9	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	90344617	90344617	G	A	SNP	CTSL1	ENST00000340342	human	ensembl	69_37n	1	known	missense	c.751	p.A251T	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL1	HGNC	ENSG00000135047	196	0	0	122	75	38.07	-	-	-	A	90344617	G	A	90344617	3	1	228	1	0	0	0	0	1	0	0	0	4070	1319	46	4	769	4	CTSL1	9	90344617	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1406794	90344617	50868814	646	14752										
SEMA4D	0	genome.wustl.edu	37	chr9	92006248	92006250	+	In_Frame_Del	DEL	GAA	GAA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactccacagacacctccgtGaagaagaagtagaccctgtc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	92006248	92006250	GAA	-	DEL	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	in_frame_del	c.705_703	p.F235in_frame_del	1.000:1.000:1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	76	0	0	54	27	32.14	-	-	-	-	92006250	GAA	-	92006248	7	5	228	1	0	1	0	1	0	0	0	0	14122	1281	45	0	2485	0	SEMA4D	9	92006248	In_Frame_Del	DEL	GAA	TCGA-A8-A09Z-01A-11W-A019-09	1661631	92006248	49207183	647	14753										
OGN	0	genome.wustl.edu	37	chr9	95155439	95155439	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgtaaagataggctgattccTttggtaagggtggtacagca	13	6	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	95155439	95155439	T	G	SNP	OGN	ENST00000262551	human	ensembl	69_37n	-1	known	missense	c.356	p.K119T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OGN	HGNC	ENSG00000106809	162	0	0	85	68	44.44	-	-	-	G	95155439	T	G	95155439	3	3	228	1	0	0	0	0	1	0	0	0	10919	1609	56	5	556	5	OGN	9	95155439	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3149191	95155439	46057992	648	14754										
ZNF367	0	genome.wustl.edu	37	chr9	99157205	99157205	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttccacagtctggatagtcAcacagatagggcctctcacc	8	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	99157205	99157205	A	G	SNP	ZNF367	ENST00000375256	human	ensembl	69_37n	-1	known	silent	c.591	p.C197	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF367	HGNC	ENSG00000165244	133	0	0	89	93	51.1	-	-	-	G	99157205	A	G	99157205	2	3	228	1	0	0	0	0	0	0	0	1	17967	157	6	5		5	ZNF367	9	99157205	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4001766	99157205	42056226	649	14755										
ANKS6	0	genome.wustl.edu	37	chr9	101540588	101540588	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggcagccctcattgtggagTccagagctggctcaggctcg	15	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	101540588	101540588	T	C	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	missense	c.1487	p.D496G	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	14	0	0	7	6	46.15	-	-	-	C	101540588	T	C	101540588	3	2	228	1	0	0	0	0	1	0	0	0	691	1667	58	5	1164	5	ANKS6	9	101540588	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2383383	101540588	39672843	650	14756										
MRPL50	0	genome.wustl.edu	37	chr9	104152860	104152860	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatcaagaacatctctaaccCtgcacatctggtggagtctg	8	11	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	104152860	104152860	C	A	SNP	MRPL50	ENST00000374865	human	ensembl	69_37n	-1	known	missense	c.365	p.R122M	0.899	pfam_Ribosomal_L50_mt	pfam_Ribosomal_L50_mt	-	no_errors	MRPL50	HGNC	ENSG00000136897	381	0	0	174	111	38.95	-	-	-	A	104152860	C	A	104152860	3	1	228	1	0	0	0	0	1	0	0	0	9886	681	24	4	115	4	MRPL50	9	104152860	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2612272	104152860	37060571	651	14757										
SLC44A1	0	genome.wustl.edu	37	chr9	108136937	108136937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcacctcagcaaaggatgCctttgtcattctggtggaga	11	10	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	108136937	108136937	C	T	SNP	SLC44A1	ENST00000374720	human	ensembl	69_37n	1	known	missense	c.1553	p.A518V	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	319	0	0	144	113	43.97	-	-	-	T	108136937	C	T	108136937	3	4	228	1	0	0	0	0	1	0	0	0	14724	739	26	4	1603	4	SLC44A1	9	108136937	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3984077	108136937	33076494	652	14758										
TMEM38B	0	genome.wustl.edu	37	chr9	108483828	108483828	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcattttcaggtatattacaTttttttgcccgcatgaccta							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	108483828	108483828	T	-	DEL	TMEM38B	ENST00000374692	human	ensembl	69_37n	1	known	frame_shift_del	c.280	p.C96fs	0.996	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209	125	1	0.79	65	43	39.09	-	-	-	-	108483828	T	-	108483828	7	5	228	1	0	1	0	1	0	0	0	0	16255	1493	52	0	290	0	TMEM38B	9	108483828	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	346891	108483828	32729603	653	14759										
TXN	0	genome.wustl.edu	37	chr9	113007189	113007189	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtactgagctttgacagaAgtaatccaaaaccagaaact	8	8	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	113007189	113007189	A	G	SNP	TXN	ENST00000487892	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXN	HGNC	ENSG00000136810	58	0	0	29	13	30.95	-	-	-	G	113007189	A	G	113007189	1	3	228	0	1	0	0	0	0	0	0	0	16887	87	3	5		5	TXN	9	113007189	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4523361	113007189	28206242	654	14760										
KIAA0368	0	genome.wustl.edu	37	chr9	114137473	114137473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcactgacacatcaaggtAttgcaggcacttttgaaaaa	8	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	114137473	114137473	A	G	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.4564	p.Y1522H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	204	0	0	140	68	32.69	-	-	-	G	114137473	A	G	114137473	3	3	228	1	0	0	0	0	1	0	0	0	8223	449	16	5	1541	5	KIAA0368	9	114137473	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1130284	114137473	27075958	655	14761										
PTGR1	0	genome.wustl.edu	37	chr9	114332483	114332483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatagataacaatctctgggGgtgggcctgtgaagagaagg	16	5	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	114332483	114332483	G	A	SNP	PTGR1	ENST00000309195	human	ensembl	69_37n	-1	known	missense	c.767	p.P256L	0.140	pfam_ADH_C,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853	43	0	0	27	28	50.91	-	-	-	A	114332483	G	A	114332483	3	1	228	1	0	0	0	0	1	0	0	0	12834	1232	43	4	261	4	PTGR1	9	114332483	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	195010	114332483	26880948	656	14762										
C9orf43	0	genome.wustl.edu	37	chr9	116191456	116191456	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcatcttcttttaggtccTgaattgtatgaaacagaacc	7	9	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	116191456	116191456	T	C	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	silent	c.1176	p.P392	0.001	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	518	0	0	335	206	38.08	-	-	-	C	116191456	T	C	116191456	2	2	228	1	0	0	0	0	0	0	0	1	2508	1567	55	5		5	C9orf43	9	116191456	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1858973	116191456	25021975	657	14763										
ZNF618	0	genome.wustl.edu	37	chr9	116812464	116812464	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttaagacttgacttcgggggAaaaaaaaagaaaaagagaag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	116812464	116812464	A	-	DEL	ZNF618	ENST00000470105	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF618	HGNC	ENSG00000157657	165	0	0	112	49	29.7	-	-	-	-	116812464	A	-	116812464	6	5	228	0	1	1	0	1	0	0	0	0	18138	261	9	0		0	ZNF618	9	116812464	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	621008	116812464	24400967	658	14764										
COL27A1	0	genome.wustl.edu	37	chr9	116993404	116993404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttggctacccgggacccaagGgcatgaaggtaagcaaggga	15	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	116993404	116993404	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.2512	p.G838S	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	50	0	0	51	20	28.17	-	-	-	A	116993404	G	A	116993404	3	1	228	1	0	0	0	0	1	0	0	0	3715	1232	43	4	2570	4	COL27A1	9	116993404	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	180940	116993404	24220027	659	14765										
C5	0	genome.wustl.edu	37	chr9	123783971	123783971	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagcgaatctttaacctgcAcctgtttgtcaaaacaatcc	5	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	123783971	123783971	A	G	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.1118	p.V373A	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	123	0	0	66	39	37.14	-	-	-	G	123783971	A	G	123783971	3	3	228	1	0	0	0	0	1	0	0	0	2301	173	6	5	4036	5	C5	9	123783971	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	6790567	123783971	17429460	660	14766										
PSMB7	0	genome.wustl.edu	37	chr9	127177457	127177457	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtgcgctgggaaggtgggAgagcagacccggcttcagga	19	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	127177457	127177457	A	T	SNP	PSMB7	ENST00000466951	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMB7	HGNC	ENSG00000136930	9	0	0	9	10	52.63	-	-	-	T	127177457	A	T	127177457	1	4	228	0	1	0	0	0	0	0	0	0	12762	319	11	5		5	PSMB7	9	127177457	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3393486	127177457	14035974	661	14767										
GOLGA1	0	genome.wustl.edu	37	chr9	127651761	127651761	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttctggagaagcacttcggTtttttcccgcagattctgtt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	127651761	127651761	T	-	DEL	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	frame_shift_del	c.1552	p.T518fs	0.000	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	497	0	0	368	223	36.74	-	-	-	-	127651761	T	-	127651761	7	5	228	1	0	1	0	1	0	0	0	0	6603	1725	60	0	779	0	GOLGA1	9	127651761	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	474304	127651761	13561670	662	14768										
MAPKAP1	0	genome.wustl.edu	37	chr9	128201005	128201005	+	RNA	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtccccagcgctccctcctaGggggcccccgacaccttccc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	128201005	128201005	G	-	DEL	MAPKAP1	ENST00000483937	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	26	0	0	12	10	43.48	-	-	-	-	128201005	G	-	128201005	6	5	228	0	1	1	0	1	0	0	0	0	9359	1015	35	0		0	MAPKAP1	9	128201005	RNA	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	549244	128201005	13012426	663	14769										
PBX3	0	genome.wustl.edu	37	chr9	128511053	128511053	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgatcttgagaaaaaactGcaataaatctggagtcaatt	7	7	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	128511053	128511053	G	A	SNP	PBX3	ENST00000497967	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PBX3	HGNC	ENSG00000167081	32	0	0	10	9	47.37	-	-	-	A	128511053	G	A	128511053	1	1	228	0	1	0	0	0	0	0	0	0	11567	1334	46	4		4	PBX3	9	128511053	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	310048	128511053	12702378	664	14770										
SLC25A25	0	genome.wustl.edu	37	chr9	130869453	130869453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtcaggacccggatgcaggCgcaaggtaaggctggccctg	16	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	130869453	130869453	C	T	SNP	SLC25A25	ENST00000373069	human	ensembl	69_37n	1	known	missense	c.1358	p.A453V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,prints_Mit_carrier,prints_Graves_DC,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A25	HGNC	ENSG00000148339	32	0	0	21	21	50	-	-	-	T	130869453	C	T	130869453	3	4	228	1	0	0	0	0	1	0	0	0	14577	768	27	1	1742	1	SLC25A25	9	130869453	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2358400	130869453	10343978	665	14771										
PKN3	0	genome.wustl.edu	37	chr9	131476616	131476616	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcggaccccaacaacactgCgagaggcctctgaccctgcc	9	18	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	131476616	131476616	C	T	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	nonsense	c.1453	p.R485*	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	61	0	0	34	17	33.33	-	-	-	T	131476616	C	T	131476616	4	4	228	1	0	0	0	0	0	1	0	0	12055	760	27	1	1495	1	PKN3	9	131476616	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	607163	131476616	9736815	666	14772										
TBC1D13	0	genome.wustl.edu	37	chr9	131554822	131554822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acacgtacttcaaggacaacGaggtgctgctgcagatcgac	11	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	131554822	131554822	G	A	SNP	TBC1D13	ENST00000372648	human	ensembl	69_37n	1	known	missense	c.352	p.E118K	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021	41	0	0	37	12	24.49	-	-	-	A	131554822	G	A	131554822	3	1	228	1	0	0	0	0	1	0	0	0	15694	1059	37	1	374	1	TBC1D13	9	131554822	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	78206	131554822	9658609	667	14773										
NUP188	0	genome.wustl.edu	37	chr9	131718643	131718643	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtagtccaagttcagctgAaaaagtgaaagctaataaag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	131718643	131718643	A	-	DEL	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	frame_shift_del	c.176	p.V61fs	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	56	0	0	40	19	32.2	-	-	-	-	131718643	A	-	131718643	7	5	228	1	0	1	0	1	0	0	0	0	10831	246	9	0	190	0	NUP188	9	131718643	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	163821	131718643	9494788	668	14774										
NUP188	0	genome.wustl.edu	37	chr9	131764173	131764173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcctcccagggagccacagCagtggctggagctggcatca	13	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	131764173	131764173	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.4055	p.A1352V	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	50	0	0	43	30	41.1	-	-	-	T	131764173	C	T	131764173	3	4	228	1	0	0	0	0	1	0	0	0	10831	710	25	4	4197	4	NUP188	9	131764173	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	45530	131764173	9449258	669	14775										
CRAT	0	genome.wustl.edu	37	chr9	131864221	131864221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtggttggaggtgaggatgCccacaggctccttgttggtc	17	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	131864221	131864221	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.746	p.G249D	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	31	0	0	15	11	42.31	-	-	-	T	131864221	C	T	131864221	3	4	228	1	0	0	0	0	1	0	0	0	3877	739	26	4	1170	4	CRAT	9	131864221	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	100048	131864221	9349210	670	14776										
TOR1B	0	genome.wustl.edu	37	chr9	132569561	132569561	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taaattgcaccccgggatcaTtgacgcaatcaagccgtttc	8	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	132569561	132569561	T	C	SNP	TOR1B	ENST00000259339	human	ensembl	69_37n	1	known	missense	c.560	p.I187T	1.000	pfam_ATPase_AAA_core,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816	126	0	0	52	42	44.68	-	-	-	C	132569561	T	C	132569561	3	2	228	1	0	0	0	0	1	0	0	0	16470	1493	52	5	570	5	TOR1B	9	132569561	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	705340	132569561	8643870	671	14777										
QRFP	0	genome.wustl.edu	37	chr9	133768858	133768858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaagccgcctttcttcctgCtgtagccattgagctcctca	8	14	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	133768858	133768858	C	T	SNP	QRFP	ENST00000343079	human	ensembl	69_37n	-1	known	missense	c.368	p.S123N	0.996	pfam_P518	pfam_P518	-	no_errors	QRFP	HGNC	ENSG00000188710	16	0	0	26	10	27.78	-	-	-	T	133768858	C	T	133768858	3	4	228	1	0	0	0	0	1	0	0	0	12960	797	28	4	45	4	QRFP	9	133768858	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1199297	133768858	7444573	672	14778										
RALGDS	0	genome.wustl.edu	37	chr9	135975404	135975404	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgtcccagtgaaaaatgcCttttctctttgctcctcact	5	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	135975404	135975404	C	A	SNP	RALGDS	ENST00000469972	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RALGDS	HGNC	ENSG00000160271	22	0	0	8	4	33.33	-	-	-	A	135975404	C	A	135975404	1	1	228	0	1	0	0	0	0	0	0	0	13099	696	24	4		4	RALGDS	9	135975404	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2206546	135975404	5238027	673	14779										
GBGT1	0	genome.wustl.edu	37	chr9	136029472	136029472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctccatccggcgcatggatGtctcctcccagtgggagtga	12	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	136029472	136029472	G	A	SNP	GBGT1	ENST00000372040	human	ensembl	69_37n	-1	known	missense	c.536	p.T179I	0.731	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GBGT1	HGNC	ENSG00000148288	12	0	0	9	9	50	-	-	-	A	136029472	G	A	136029472	3	1	228	1	0	0	0	0	1	0	0	0	6322	1377	48	4	511	4	GBGT1	9	136029472	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	54068	136029472	5183959	674	14780										
SURF1	0	genome.wustl.edu	37	chr9	136220911	136220911	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaaggagaaaggcaaagggCgtgctcttcaaaggggaact	15	6	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	136220911	136220911	C	T	SNP	SURF1	ENST00000495952	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SURF1	HGNC	ENSG00000148290	14	0	0	11	4	26.67	-	-	-	T	136220911	C	T	136220911	1	4	228	0	1	0	0	0	0	0	0	0	15494	783	27	1		1	SURF1	9	136220911	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	191439	136220911	4992520	675	14781										
COL5A1	0	genome.wustl.edu	37	chr9	137671963	137671963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacagggggccgatggcatcCgtggtctgaagggcacaaag	16	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	137671963	137671963	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.2401	p.R801C	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	8	0	0	7	11	61.11	-	-	-	T	137671963	C	T	137671963	3	4	228	1	0	0	0	0	1	0	0	0	3726	652	23	1	2511	1	COL5A1	9	137671963	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1451052	137671963	3541468	676	14782										
EHMT1	0	genome.wustl.edu	37	chr9	140707894	140707894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgtgtcaacgccgtggacaGcgagccatgccccagcaact	11	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	9	140707894	140707894	G	T	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.3092	p.S1031I	0.011	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	24	0	0	6	5	45.45	-	-	-	T	140707894	G	T	140707894	3	4	228	1	0	0	0	0	1	0	0	0	5018	971	34	4	3223	4	EHMT1	9	140707894	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3035931	140707894	505537	677	14783										
ADARB2	0	genome.wustl.edu	37	chr10	1229068	1229069	+	RNA	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccggccgacccgccacgtcgINSccccccagacacggtcccat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	1229068	1229069	-	C	INS	ADARB2	ENST00000474762	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.014:0.021	-	-	-	no_errors	ADARB2	HGNC	ENSG00000185736	14	0	0	6	7	53.85	-	-	-	C	1229069	-	C	1229068	6	5	228	0	1	1	1	0	0	0	0	0	283	1102	38	0		0	ADARB2	10	1229068	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09		1229068	134305679	678	14784										
PITRM1	0	genome.wustl.edu	37	chr10	3182906	3182906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtaaagggtgaaaatcccaTtgtggctgagttttgcgcct	12	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	3182906	3182906	T	C	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.2747	p.N916S	0.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	33	0	0	11	7	38.89	-	-	-	C	3182906	T	C	3182906	3	2	228	1	0	0	0	0	1	0	0	0	12027	1493	52	5	385	5	PITRM1	10	3182906	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1953838	3182906	132351841	679	14785										
PFKFB3	0	genome.wustl.edu	37	chr10	6268275	6268275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcatgtggcctccacctcgGccgccctgcccagctgcctg	11	19	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	6268275	6268275	G	A	SNP	PFKFB3	ENST00000540253	human	ensembl	69_37n	1	known	missense	c.1504	p.A502T	1.000	NULL	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525	42	0	0	15	27	64.29	-	-	-	A	6268275	G	A	6268275	3	1	228	1	0	0	0	0	1	0	0	0	11836	1203	42	4	1536	4	PFKFB3	10	6268275	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3085369	6268275	129266472	680	14786										
GATA3	0	genome.wustl.edu	37	chr10	8111496	8111497	+	Frame_Shift_Del	DEL	TG	TG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agaccaccacaaccacactcTggaggaggaatgccaatggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	8111496	8111497	TG	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.985_986	p.W329fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	82	0	0	46	23	32.39	-	-	-	-	8111497	TG	-	8111496	7	5	228	1	0	1	0	1	0	0	0	0	6305	1580	55	0	999	0	GATA3	10	8111496	Frame_Shift_Del	DEL	TG	TCGA-A8-A09Z-01A-11W-A019-09	1843221	8111496	127423251	681	14787										
SEC61A2	0	genome.wustl.edu	37	chr10	12195758	12195758	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgttactaacattgaaaataTgtggatacactgaagagcta	8	6	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	12195758	12195758	T	C	SNP	SEC61A2	ENST00000379017	human	ensembl	69_37n	1	known	missense	c.484	p.C162R	0.343	NULL	pfam_Translocon_Sec61/SecY_plug_dom,pfam_SecY,superfamily_SecY_su_dom	-	no_errors	SEC61A2	HGNC	ENSG00000065665	87	0	0	38	38	50	-	-	-	C	12195758	T	C	12195758	3	2	228	1	0	0	0	0	1	0	0	0	14089	1479	51	5		5	SEC61A2	10	12195758	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4084262	12195758	123338989	682	14788										
MCM10	0	genome.wustl.edu	37	chr10	13213138	13213138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agacgaaaaggaaaatctggCcactctctttggagatatgg	11	7	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	13213138	13213138	C	T	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.224	p.A75V	0.946	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	390	0	0	268	188	41.23	-	-	-	T	13213138	C	T	13213138	3	4	228	1	0	0	0	0	1	0	0	0	9456	739	26	4	230	4	MCM10	10	13213138	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1017380	13213138	122321609	683	14789										
PRPF18	0	genome.wustl.edu	37	chr10	13639528	13639528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcatattttgaaagatgtgGctacaaggtatgaatgtctg	11	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	13639528	13639528	G	A	SNP	PRPF18	ENST00000378572	human	ensembl	69_37n	1	known	missense	c.137	p.G46D	1.000	NULL	pfam_Prp18,pfam_PRP4,superfamily_Prp18,smart_SFM	-	no_errors	PRPF18	HGNC	ENSG00000165630	94	0	0	59	42	41.58	-	-	-	A	13639528	G	A	13639528	3	1	228	1	0	0	0	0	1	0	0	0	12644	1203	42	4	143	4	PRPF18	10	13639528	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	426390	13639528	121895219	684	14790										
CUBN	0	genome.wustl.edu	37	chr10	16981122	16981122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggcgactttcccatgagttCccacaatattatcattgcca	6	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	16981122	16981122	C	T	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.5573	p.G1858E	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	188	0	0	123	66	34.92	-	-	-	T	16981122	C	T	16981122	3	4	228	1	0	0	0	0	1	0	0	0	4082	855	30	2	5418	2	CUBN	10	16981122	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3341594	16981122	118553625	685	14791										
CUBN	0	genome.wustl.edu	37	chr10	17142044	17142044	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttactgtaaagcctctcccAtttcttaaatgttcagaata	4	10	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	17142044	17142044	A	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.1725	p.N575	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	193	1	0.51	93	59	38.56	-	-	-	G	17142044	A	G	17142044	2	3	228	1	0	0	0	0	0	0	0	1	4082	214	8	5		5	CUBN	10	17142044	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	160922	17142044	118392703	686	14792										
SLC39A12	0	genome.wustl.edu	37	chr10	18242342	18242342	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcaggccaaccggcagaccTgctacaggttctctctgctg	10	14	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	18242342	18242342	T	C	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.137	p.L46P	0.003	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	131	0	0	89	64	41.83	-	-	-	C	18242342	T	C	18242342	3	2	228	1	0	0	0	0	1	0	0	0	14704	1580	55	5	139	5	SLC39A12	10	18242342	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1100298	18242342	117292405	687	14793										
PLXDC2	0	genome.wustl.edu	37	chr10	20290837	20290837	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gacacgaaccgagcaagcgtCggccaagactctcctgagcc	11	15	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	20290837	20290837	C	T	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	silent	c.246	p.V82	0.832	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	68	0	0	36	35	49.3	-	-	-	T	20290837	C	T	20290837	2	4	228	1	0	0	0	0	0	0	0	1	12192	871	31	1		1	PLXDC2	10	20290837	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2048495	20290837	115243910	688	14794										
MYO3A	0	genome.wustl.edu	37	chr10	26463470	26463470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagagaagcatgtggtttggCaattttttcaaaacaggtat	10	4	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	26463470	26463470	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.4277	p.A1426V	0.983	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	243	0	0	128	85	39.91	-	-	-	T	26463470	C	T	26463470	3	4	228	1	0	0	0	0	1	0	0	0	10148	710	25	4	4387	4	MYO3A	10	26463470	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6172633	26463470	109071277	689	14795										
SVIL	0	genome.wustl.edu	37	chr10	29801715	29801715	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgcaggctgctggccggCgccttgccgccctcctgcct	14	17	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	29801715	29801715	C	T	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	silent	c.3465	p.A1155	0.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	191	0	0	104	78	41.94	-	-	-	T	29801715	C	T	29801715	2	4	228	1	0	0	0	0	0	0	0	1	15512	755	27	1		1	SVIL	10	29801715	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3338245	29801715	105733032	690	14796										
ZNF438	0	genome.wustl.edu	37	chr10	31138622	31138622	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcttacaaagtgtgctttccCtgaaagagctgtgaggtcct	11	9	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	31138622	31138622	C	A	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.712	p.G238W	0.071	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	191	1	0.52	93	74	44.31	-	-	-	A	31138622	C	A	31138622	3	1	228	1	0	0	0	0	1	0	0	0	18006	681	24	4	1782	4	ZNF438	10	31138622	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1336907	31138622	104396125	691	14797										
ZNF33A	0	genome.wustl.edu	37	chr10	38344792	38344792	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acacacacaggggagaaaccCtacgaatgtcatgaatgtgg	11	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	38344792	38344792	C	A	SNP	ZNF33A	ENST00000432900	human	ensembl	69_37n	1	known	silent	c.1758	p.P586	0.751	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180	350	1	0.28	231	157	40.46	-	-	-	A	38344792	C	A	38344792	2	1	228	1	0	0	0	0	0	0	0	1	17950	668	24	4		4	ZNF33A	10	38344792	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	7206170	38344792	97189955	692	14798										
ZNF485	0	genome.wustl.edu	37	chr10	44111877	44111877	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagaagctccacagagaagaActataagtgcaaggaatgtg	11	7	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	44111877	44111877	A	G	SNP	ZNF485	ENST00000361807	human	ensembl	69_37n	1	known	missense	c.386	p.N129S	0.061	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	96	0	0	45	40	47.06	-	-	-	G	44111877	A	G	44111877	3	3	228	1	0	0	0	0	1	0	0	0	18034	43	2	5	400	5	ZNF485	10	44111877	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5767085	44111877	91422870	693	14799										
RASSF4	0	genome.wustl.edu	37	chr10	45478052	45478052	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggctgcagatgcaggatgaCcgggagcaggtgcacctccc	15	13	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	45478052	45478052	C	T	SNP	RASSF4	ENST00000334940	human	ensembl	69_37n	1	known	silent	c.168	p.D56	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF4	HGNC	ENSG00000107551	23	0	0	13	9	40.91	-	-	-	T	45478052	C	T	45478052	2	4	228	1	0	0	0	0	0	0	0	1	13171	506	18	4		4	RASSF4	10	45478052	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1366175	45478052	90056695	694	14800										
SYT15	0	genome.wustl.edu	37	chr10	46969350	46969350	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtcccaggcagctcctcataGgtgagggtggcacagaacct	13	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	46969350	46969350	G	T	SNP	SYT15	ENST00000374321	human	ensembl	69_37n	-1	known	silent	c.111	p.T37	0.998	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT15	HGNC	ENSG00000204176	35	0	0	26	13	33.33	-	-	-	T	46969350	G	T	46969350	2	4	228	1	0	0	0	0	0	0	0	1	15563	987	35	4		4	SYT15	10	46969350	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1491298	46969350	88565397	695	14801										
RBP3	0	genome.wustl.edu	37	chr10	48388823	48388823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctggaggtctgctgtgagCtgagaggccagagactccaa	14	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	48388823	48388823	C	T	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	silent	c.2055	p.Q685	1.000	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	10	0	0	9	6	40	-	-	-	T	48388823	C	T	48388823	2	4	228	1	0	0	0	0	0	0	0	1	13240	796	28	4		4	RBP3	10	48388823	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1419473	48388823	87145924	696	14802										
A1CF	0	genome.wustl.edu	37	chr10	52601632	52601632	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggagcttacctaatttcatAattattaagttgcttgattg	7	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	52601632	52601632	A	T	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	missense	c.355	p.Y119N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	127	0	0	88	45	33.83	-	-	-	T	52601632	A	T	52601632	3	4	228	1	0	0	0	0	1	0	0	0	2	362	13	5	1465	5	A1CF	10	52601632	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4212809	52601632	82933115	697	14803										
PCDH15	0	genome.wustl.edu	37	chr10	55700650	55700650	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcatttcctgaaacaatggAgtacacaatactttgattaa	5	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	55700650	55700650	A	T	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.3208	p.S1070T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	116	0	0	65	44	40.37	-	-	-	T	55700650	A	T	55700650	3	4	228	1	0	0	0	0	1	0	0	0	11584	304	11	5	4318	5	PCDH15	10	55700650	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3099018	55700650	79834097	698	14804										
PCDH15	0	genome.wustl.edu	37	chr10	56089435	56089435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acactatatttccagtcaacAttaggggaatttcaaaggtg	8	7	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	56089435	56089435	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.626	p.M209T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	207	0	0	85	68	44.16	-	-	-	G	56089435	A	G	56089435	3	3	228	1	0	0	0	0	1	0	0	0	11584	217	8	5	6993	5	PCDH15	10	56089435	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	388785	56089435	79445312	699	14805										
FAM13C	0	genome.wustl.edu	37	chr10	61083827	61083827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctggtgttcctgctctcaCctgacactctgactggctgg	11	13	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	61083827	61083827	C	T	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.364	p.V122M	0.975	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	608	0	0	388	260	40.06	-	-	-	T	61083827	C	T	61083827	3	4	228	1	0	0	0	0	1	0	0	0	5494	507	18	4	1437	4	FAM13C	10	61083827	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4994392	61083827	74450920	700	14806										
ARID5B	0	genome.wustl.edu	37	chr10	63700041	63700041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtggagatgtggcttccacGctggaccagtgaaaactgag	14	8	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	63700041	63700041	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.376	p.A126T	0.993	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	121	0	0	77	61	44.2	-	-	-	A	63700041	G	A	63700041	3	1	228	1	0	0	0	0	1	0	0	0	924	1087	38	1	386	1	ARID5B	10	63700041	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2616214	63700041	71834706	701	14807										
ZNF365	0	genome.wustl.edu	37	chr10	64219525	64219525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaaggtgctggcgaagctcGcctggtgtgccaaaatgacc	14	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	64219525	64219525	G	A	SNP	ZNF365	ENST00000410046	human	ensembl	69_37n	1	known	missense	c.950	p.R317H	0.001	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	10	0	0	3	7	70	-	-	-	A	64219525	G	A	64219525	3	1	228	1	0	0	0	0	1	0	0	0	17965	1087	38	1	1268	1	ZNF365	10	64219525	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	519484	64219525	71315222	702	14808										
TET1	0	genome.wustl.edu	37	chr10	70406323	70406323	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacgggaaggcattcactgaTaaagcttataattctcaggt	9	7	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	70406323	70406323	T	C	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.3837	p.D1279	0.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	167	0	0	87	69	43.95	-	-	-	C	70406323	T	C	70406323	2	2	228	1	0	0	0	0	0	0	0	1	15864	1403	49	5		5	TET1	10	70406323	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	6186798	70406323	65128424	703	14809										
CCAR1	0	genome.wustl.edu	37	chr10	70509394	70509394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcacctcggagagttcgacGtgttgttccacgttacacag	10	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	70509394	70509394	G	A	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.1070	p.R357H	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	130	0	0	111	47	29.75	-	-	-	A	70509394	G	A	70509394	3	1	228	1	0	0	0	0	1	0	0	0	2755	1145	40	1	1104	1	CCAR1	10	70509394	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	103071	70509394	65025353	704	14810										
TACR2	0	genome.wustl.edu	37	chr10	71164800	71164800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccttggtgggtgtgacccAtgggcagcagcggaaggcaa	16	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	71164800	71164800	A	G	SNP	TACR2	ENST00000373306	human	ensembl	69_37n	-1	known	missense	c.979	p.W327R	0.651	prints_NK2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073	18	0	0	13	10	43.48	-	-	-	G	71164800	A	G	71164800	3	3	228	1	0	0	0	0	1	0	0	0	15598	217	8	5	221	5	TACR2	10	71164800	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	655406	71164800	64369947	705	14811										
NEUROG3	0	genome.wustl.edu	37	chr10	71332636	71332636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggagcttcctcggggcccctCggcagcctccctcttccgcc	11	20	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	71332636	71332636	C	T	SNP	NEUROG3	ENST00000242462	human	ensembl	69_37n	-1	known	missense	c.164	p.R55Q	0.416	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	NEUROG3	HGNC	ENSG00000122859	16	0	0	11	5	31.25	-	-	-	T	71332636	C	T	71332636	3	4	228	1	0	0	0	0	1	0	0	0	10426	884	31	1	484	1	NEUROG3	10	71332636	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	167836	71332636	64202111	706	14812										
CDH23	0	genome.wustl.edu	37	chr10	73461950	73461950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgagctgatgcgcaaaatcGtcgtctctgttactgactgt	10	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	73461950	73461950	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.2578	p.V860I	0.302	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	43	0	0	22	7	24.14	-	-	-	A	73461950	G	A	73461950	3	1	228	1	0	0	0	0	1	0	0	0	3137	1145	40	1	2882	1	CDH23	10	73461950	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2129314	73461950	62072797	707	14813										
PLA2G12B	0	genome.wustl.edu	37	chr10	74714323	74714323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attgacggattcaaagcttcCccggaggtgccgaaggcccc	12	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	74714323	74714323	C	T	SNP	PLA2G12B	ENST00000373032	human	ensembl	69_37n	-1	known	missense	c.121	p.G41R	0.999	pfam_PLipase_A2_secretory_G12	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	-	no_errors	PLA2G12B	HGNC	ENSG00000138308	178	1	0.56	112	68	37.57	-	-	-	T	74714323	C	T	74714323	3	4	228	1	0	0	0	0	1	0	0	0	12065	632	22	4	482	4	PLA2G12B	10	74714323	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1252373	74714323	60820424	708	14814										
KIAA0913	0	genome.wustl.edu	37	chr10	75561275	75561275	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatggccaccttctcccccTgagtctttcacccttagggt	8	15	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	75561275	75561275	T	C	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	nonstop	c.5527	p.*1843R	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	27	0	0	9	7	43.75	-	-	-	C	75561275	T	C	75561275	4	2	228	1	0	0	0	0	0	0	0	0	8252	1593	55	5	5629	5	KIAA0913	10	75561275	Nonstop_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	846952	75561275	59973472	709	14815										
VCL	0	genome.wustl.edu	37	chr10	75863617	75863617	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttacttaggaaccctggaAatcaagctgcttatgaacat	7	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	75863617	75863617	A	G	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	missense	c.2062	p.N688D	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	117	0	0	97	47	32.64	-	-	-	G	75863617	A	G	75863617	3	3	228	1	0	0	0	0	1	0	0	0	17236	14	1	5	2120	5	VCL	10	75863617	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	302342	75863617	59671130	710	14816										
AP3M1	0	genome.wustl.edu	37	chr10	75898019	75898019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggtacattttcaacatcaGcagctttctcttgagcttca	7	10	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	75898019	75898019	G	A	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.119	p.A40V	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	146	0	0	74	62	45.59	-	-	-	A	75898019	G	A	75898019	3	1	228	1	0	0	0	0	1	0	0	0	748	971	34	4	1169	4	AP3M1	10	75898019	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	34402	75898019	59636728	711	14817										
POLR3A	0	genome.wustl.edu	37	chr10	79773330	79773330	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttggcgttgttagttgtggTggtgttttcatgtaagtttc	13	3	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	79773330	79773330	T	C	SNP	POLR3A	ENST00000484760	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	POLR3A	HGNC	ENSG00000148606	112	0	0	82	52	38.81	-	-	-	C	79773330	T	C	79773330	1	2	228	0	1	0	0	0	0	0	0	0	12302	1711	59	5		5	POLR3A	10	79773330	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3875311	79773330	55761417	712	14818										
ANXA11	0	genome.wustl.edu	37	chr10	81915510	81915510	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctctaggacggtgaatctcGgggctatttgtggatttgtt	14	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	81915510	81915510	G	A	SNP	ANXA11	ENST00000463340	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANXA11	HGNC	ENSG00000122359	87	0	0	62	43	40.95	-	-	-	A	81915510	G	A	81915510	1	1	228	0	1	0	0	0	0	0	0	0	715	1131	39	1		1	ANXA11	10	81915510	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2142180	81915510	53619237	713	14819										
CDHR1	0	genome.wustl.edu	37	chr10	85974488	85974488	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtcactgacccctgttttgcAcaatggtataatccccactg	7	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	85974488	85974488	A	G	SNP	CDHR1	ENST00000459673	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDHR1	HGNC	ENSG00000148600	19	0	0	10	12	54.55	-	-	-	G	85974488	A	G	85974488	1	3	228	0	1	0	0	0	0	0	0	0	3147	174	6	5		5	CDHR1	10	85974488	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4058978	85974488	49560259	714	14820										
LIPA	0	genome.wustl.edu	37	chr10	90982282	90982282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcctacctggctccagtgtaAcatgttttgcacagaagttc	9	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	90982282	90982282	A	G	SNP	LIPA	ENST00000542307	human	ensembl	69_37n	-1	known	missense	c.389	p.V130A	0.380	NULL	pfam_AB_hydrolase_lipase	-	no_errors	LIPA	HGNC	ENSG00000107798	168	0	0	90	79	46.75	-	-	-	G	90982282	A	G	90982282	3	3	228	1	0	0	0	0	1	0	0	0	8875	40	2	5	331	5	LIPA	10	90982282	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5007794	90982282	44552465	715	14821										
TNKS2	0	genome.wustl.edu	37	chr10	93605681	93605681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatcaggaaggacaaacacCtttagatttagtttcagtaa	7	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	93605681	93605681	C	T	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	missense	c.2342	p.P781L	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	140	0	0	67	45	40.18	-	-	-	T	93605681	C	T	93605681	3	4	228	1	0	0	0	0	1	0	0	0	16416	681	24	4	2412	4	TNKS2	10	93605681	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2623399	93605681	41929066	716	14822										
MYOF	0	genome.wustl.edu	37	chr10	95113625	95113625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcttgatagacatagcagcGcagatggtagatgtagactc	13	7	0	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	95113625	95113625	G	A	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.3424	p.R1142C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	307	0	0	119	59	33.15	-	-	-	A	95113625	G	A	95113625	3	1	228	1	0	0	0	0	1	0	0	0	10161	1087	38	1	2853	1	MYOF	10	95113625	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1507944	95113625	40421122	717	14823										
HELLS	0	genome.wustl.edu	37	chr10	96333910	96333910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcactggaggagtgatgcGatggtaccaagtagaaggca	14	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	96333910	96333910	G	A	SNP	HELLS	ENST00000371332	human	ensembl	69_37n	1	known	missense	c.671	p.R224Q	1.000	smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969	244	0	0	169	99	36.94	-	-	-	A	96333910	G	A	96333910	3	1	228	1	0	0	0	0	1	0	0	0	7097	1058	37	1	701	1	HELLS	10	96333910	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1220285	96333910	39200837	718	14824										
HELLS	0	genome.wustl.edu	37	chr10	96354570	96354570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagaaaattgtggaaagagCagctgctaaaaggaaactgg	12	5	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	96354570	96354570	C	T	SNP	HELLS	ENST00000371332	human	ensembl	69_37n	1	known	missense	c.2345	p.A782V	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969	135	0	0	101	47	31.76	-	-	-	T	96354570	C	T	96354570	3	4	228	1	0	0	0	0	1	0	0	0	7097	710	25	4	2281	4	HELLS	10	96354570	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	20660	96354570	39180177	719	14825										
ALDH18A1	0	genome.wustl.edu	37	chr10	97366659	97366659	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccctcaagtcctactggtcCccgggcgtggattctcgatg	11	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	97366659	97366659	C	A	SNP	ALDH18A1	ENST00000371224	human	ensembl	69_37n	-1	known	nonsense	c.2248	p.G750*	1.000	superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	255	0	0	170	116	40.56	-	-	-	A	97366659	C	A	97366659	4	1	228	1	0	0	0	0	0	1	0	0	489	632	22	4	143	4	ALDH18A1	10	97366659	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1012089	97366659	38168088	720	14826										
PIK3AP1	0	genome.wustl.edu	37	chr10	98469446	98469446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcgctgtcccgcacgccgCagagcagcctgaccacgcgg	12	19	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	98469446	98469446	C	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	69_37n	-1	known	missense	c.308	p.C103Y	0.999	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	64	0	0	75	39	34.21	-	-	-	T	98469446	C	T	98469446	3	4	228	1	0	0	0	0	1	0	0	0	11982	710	25	4	2173	4	PIK3AP1	10	98469446	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1102787	98469446	37065301	721	14827										
SLIT1	0	genome.wustl.edu	37	chr10	98763829	98763829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggccaggtcctcacctccCacatagagtggcgcctcgct	11	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	98763829	98763829	C	T	SNP	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	silent	c.3861	p.V1287	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	85	0	0	43	28	39.44	-	-	-	T	98763829	C	T	98763829	2	4	228	1	0	0	0	0	0	0	0	1	14828	581	21	4		4	SLIT1	10	98763829	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	294383	98763829	36770918	722	14828										
RRP12	0	genome.wustl.edu	37	chr10	99141181	99141181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gattgggcagggcctgaggcCgaggaggtcacggagccaat	18	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	99141181	99141181	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	silent	c.1380	p.S460	0.001	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	19	0	0	16	6	27.27	-	-	-	T	99141181	C	T	99141181	2	4	228	1	0	0	0	0	0	0	0	1	13772	639	23	1		1	RRP12	10	99141181	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	377352	99141181	36393566	723	14829										
DNMBP	0	genome.wustl.edu	37	chr10	101643927	101643927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggggatacctggccaggaGggaggcccggagttcttctg	18	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	101643927	101643927	G	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.3910	p.L1304I	1.000	superfamily_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	172	0	0	90	66	42.31	-	-	-	T	101643927	G	T	101643927	3	4	228	1	0	0	0	0	1	0	0	0	4709	1000	35	4	907	4	DNMBP	10	101643927	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2502746	101643927	33890820	724	14830										
HIF1AN	0	genome.wustl.edu	37	chr10	102304745	102304746	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actatgatgagcagcagaacINSttttttgctcagataaaagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	102304745	102304746	-	T	INS	HIF1AN	ENST00000299163	human	ensembl	69_37n	1	known	frame_shift_ins	c.615_616	p.A207fs	1.000:1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HIF1AN	HGNC	ENSG00000166135	79	0	0	69	45	39.47	-	-	-	T	102304746	-	T	102304745	7	5	228	1	0	1	1	0	0	0	0	0	7155	564	20	0	629	0	HIF1AN	10	102304745	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	660818	102304745	33230002	725	14831										
TMEM180	0	genome.wustl.edu	37	chr10	104233463	104233463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcatgttgttggccggcccGgaccacctcagcctgctgtg	12	15	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	104233463	104233463	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	69_37n	1	known	silent	c.1062	p.P354	0.973	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111	52	0	0	46	37	44.58	-	-	-	A	104233463	G	A	104233463	2	1	228	1	0	0	0	0	0	0	0	1	16194	1103	39	1		1	TMEM180	10	104233463	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1928718	104233463	31301284	726	14832										
SFXN2	0	genome.wustl.edu	37	chr10	104489394	104489395	+	RNA	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtagcaaggcctagttttcINSttttttgtattctagtcgtt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	104489394	104489395	-	T	INS	SFXN2	ENST00000473178	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SFXN2	HGNC	ENSG00000156398	87	0	0	76	32	29.63	-	-	-	T	104489395	-	T	104489394	6	5	228	0	1	1	1	0	0	0	0	0	14283	928	32	0		0	SFXN2	10	104489394	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	255931	104489394	31045353	727	14833										
TAF5	0	genome.wustl.edu	37	chr10	105139467	105139467	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacctaaaaagaagaagcctAaaaaagatagtattggatcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	105139467	105139467	A	-	DEL	TAF5	ENST00000369839	human	ensembl	69_37n	1	known	frame_shift_del	c.1216	p.D408fs	1.000	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	195	0	0	162	95	36.54	-	-	-	-	105139467	A	-	105139467	7	5	228	1	0	1	0	1	0	0	0	0	15620	363	13	0	1230	0	TAF5	10	105139467	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	650073	105139467	30395280	728	14834										
COL17A1	0	genome.wustl.edu	37	chr10	105797411	105797411	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactccgtaagtagctcacaAcgtggcttgccagctctgag	10	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	105797411	105797411	A	G	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.3191	p.V1064A	0.982	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	96	0	0	46	27	36.99	-	-	-	G	105797411	A	G	105797411	3	3	228	1	0	0	0	0	1	0	0	0	3704	43	2	5	1346	5	COL17A1	10	105797411	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	657944	105797411	29737336	729	14835										
ACSL5	0	genome.wustl.edu	37	chr10	114164559	114164559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcatctttgctcagaataggCcagaggtaactatgttgaag	11	7	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	114164559	114164559	C	T	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	missense	c.595	p.P199S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	281	0	0	189	137	42.02	-	-	-	T	114164559	C	T	114164559	3	4	228	1	0	0	0	0	1	0	0	0	180	739	26	4	613	4	ACSL5	10	114164559	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8367148	114164559	21370188	730	14836										
ACSL5	0	genome.wustl.edu	37	chr10	114186982	114186982	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttcatcttccaggtcaaaGccatttttcttcatccagag	6	11	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	114186982	114186982	G	T	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	missense	c.2086	p.A696S	0.002	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	213	0	0	141	87	38.16	-	-	-	T	114186982	G	T	114186982	3	4	228	1	0	0	0	0	1	0	0	0	180	971	34	4	2168	4	ACSL5	10	114186982	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	22423	114186982	21347765	731	14837										
NHLRC2	0	genome.wustl.edu	37	chr10	115657931	115657931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagggactcatcagatatggGcactcctgctggactctggc	12	12	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	115657931	115657931	G	A	SNP	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	missense	c.1102	p.A368T	1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	182	0	0	104	66	38.82	-	-	-	A	115657931	G	A	115657931	3	1	228	1	0	0	0	0	1	0	0	0	10478	1203	42	4	1124	4	NHLRC2	10	115657931	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1470949	115657931	19876816	732	14838										
AFAP1L2	0	genome.wustl.edu	37	chr10	116070169	116070169	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctggtttccttcagatgctcCttcggaaggcaggccgctca	11	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	116070169	116070169	C	A	SNP	AFAP1L2	ENST00000545353	human	ensembl	69_37n	-1	known	nonsense	c.985	p.G329*	0.989	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	43	0	0	14	13	48.15	-	-	-	A	116070169	C	A	116070169	4	1	228	1	0	0	0	0	0	1	0	0	355	690	24	4	1678	4	AFAP1L2	10	116070169	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	412238	116070169	19464578	733	14839										
KCNK18	0	genome.wustl.edu	37	chr10	118957048	118957048	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggagatgctgcccagaggccCtgggaaagctcttccctggc	14	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	118957048	118957048	C	A	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.49	p.L17M	0.289	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	24	0	0	19	12	38.71	-	-	-	A	118957048	C	A	118957048	3	1	228	1	0	0	0	0	1	0	0	0	8119	680	24	4	51	4	KCNK18	10	118957048	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2886879	118957048	16577699	734	14840										
ACADSB	0	genome.wustl.edu	37	chr10	124802570	124802570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttctttttagggatataaGggaattacctccttcttagt	7	7	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	124802570	124802570	G	T	SNP	ACADSB	ENST00000358776	human	ensembl	69_37n	1	known	missense	c.690	p.K230N	1.000	superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177	215	1	0.46	102	62	37.8	-	-	-	T	124802570	G	T	124802570	3	4	228	1	0	0	0	0	1	0	0	0	115	991	35	4	712	4	ACADSB	10	124802570	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5845522	124802570	10732177	735	14841										
DOCK1	0	genome.wustl.edu	37	chr10	128824619	128824619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttttcaattcttgaaggtgGccattcccatcgaggacgtt	9	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	128824619	128824619	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.1492	p.A498T	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	16	0	0	5	9	64.29	-	-	-	A	128824619	G	A	128824619	3	1	228	1	0	0	0	0	1	0	0	0	4719	1203	42	4	1554	4	DOCK1	10	128824619	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4022049	128824619	6710128	736	14842										
MKI67	0	genome.wustl.edu	37	chr10	129905264	129905264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggttgtgaagatttgcaggCtactttggcagttttatcgt	12	5	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	129905264	129905264	C	T	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.4840	p.A1614T	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	462	0	0	338	245	41.95	-	-	-	T	129905264	C	T	129905264	3	4	228	1	0	0	0	0	1	0	0	0	9669	797	28	4	4942	4	MKI67	10	129905264	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1080645	129905264	5629483	737	14843										
EBF3	0	genome.wustl.edu	37	chr10	131761305	131761305	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aataattgcatttagtgcgaTcggtgtcaggcgcggccacc	12	10	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	131761305	131761305	T	C	SNP	EBF3	ENST00000471715	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EBF3	HGNC	ENSG00000108001	19	0	0	15	9	37.5	-	-	-	C	131761305	T	C	131761305	1	2	228	0	1	0	0	0	0	0	0	0	4917	1450	50	5		5	EBF3	10	131761305	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1856041	131761305	3773442	738	14844										
MTG1	0	genome.wustl.edu	37	chr10	135216331	135216332	+	RNA	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctcctagtcacctcatttINSaaaaaaaaaaaacaaacaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	10	135216331	135216332	-	A	INS	MTG1	ENST00000492266	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.007	-	-	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	8	0	0	11	10	47.62	-	-	-	A	135216332	-	A	135216331	6	5	228	0	1	1	1	0	0	0	0	0	9998	1769	61	0		0	MTG1	10	135216331	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	3455026	135216331	318416	739	14845										
MUC5B	0	genome.wustl.edu	37	chr11	1265962	1265962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacaaccacgggcttcacaGccaccccctcctccagccca	5	23	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	1265962	1265962	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.7861	p.A2621T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	56	0	0	45	34	43.04	-	-	-	A	1265962	G	A	1265962	3	1	228	1	0	0	0	0	1	0	0	0	10051	971	34	4	7983	4	MUC5B	11	1265962	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		1265962	133740554	740	14846										
CARS	0	genome.wustl.edu	37	chr11	3022338	3022339	+	RNA	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttaaaaagtcagtcctgtgINSccccctcactggaagcttcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	3022338	3022339	-	C	INS	CARS	ENST00000470221	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CARS	HGNC	ENSG00000110619	56	0	0	24	22	47.83	-	-	-	C	3022339	-	C	3022338	6	5	228	0	1	1	1	0	0	0	0	0	2682	1334	46	0		0	CARS	11	3022338	RNA	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	1756376	3022338	131984178	741	14847										
NUP98	0	genome.wustl.edu	37	chr11	3707219	3707219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaccctgagttgtcaatgtGcaggaggacaaagatggccc	12	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	3707219	3707219	G	A	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.4660	p.H1554Y	1.000	pfam_Nup96	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	64	0	0	28	34	54.84	-	-	-	A	3707219	G	A	3707219	3	1	228	1	0	0	0	0	1	0	0	0	10846	1319	46	4	762	4	NUP98	11	3707219	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	684881	3707219	131299297	742	14848										
OR51V1	0	genome.wustl.edu	37	chr11	5221547	5221547	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attgcaatgtaccggtcaaaGgccatagtgaggaggacaga	13	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	5221547	5221547	G	T	SNP	OR51V1	ENST00000321255	human	ensembl	69_37n	-1	known	silent	c.384	p.A128	0.959	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	216	0	0	111	57	33.93	-	-	-	T	5221547	G	T	5221547	2	4	228	1	0	0	0	0	0	0	0	1	11180	987	35	4		4	OR51V1	11	5221547	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1514328	5221547	129784969	743	14849										
OR56A3	0	genome.wustl.edu	37	chr11	5969345	5969345	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctcatcctcttcttcagcAccatccttctggtttttgtc	5	14	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	5969345	5969345	A	G	SNP	OR56A3	ENST00000329564	human	ensembl	69_37n	1	known	missense	c.769	p.T257A	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56A3	HGNC	ENSG00000184478	411	0	0	341	170	33.27	-	-	-	G	5969345	A	G	5969345	3	3	228	1	0	0	0	0	1	0	0	0	11207	159	6	5	771	5	OR56A3	11	5969345	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	747798	5969345	129037171	744	14850										
SMPD1	0	genome.wustl.edu	37	chr11	6413286	6413286	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacctgtcaatagcttccctCcccccttcattgagggcaac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	6413286	6413286	C	-	DEL	SMPD1	ENST00000342245	human	ensembl	69_37n	1	known	frame_shift_del	c.991	p.F333fs	1.000	pirsf_Sphingomy_PDE,pfam_Metallo_PEstase_dom	pirsf_Sphingomy_PDE,pfam_Metallo_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311	106	0	0	67	39	36.11	-	-	-	-	6413286	C	-	6413286	7	5	228	1	0	1	0	1	0	0	0	0	14893	855	30	0	997	0	SMPD1	11	6413286	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	443941	6413286	128593230	745	14851										
HPX	0	genome.wustl.edu	37	chr11	6453144	6453144	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatagagtttttcttcccaGgaaaaggcagcatccactgc	9	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	6453144	6453144	G	T	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	silent	c.939	p.S313	1.000	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	500	0	0	358	213	37.3	-	-	-	T	6453144	G	T	6453144	2	4	228	1	0	0	0	0	0	0	0	1	7397	987	35	4		4	HPX	11	6453144	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	39858	6453144	128553372	746	14852										
DCHS1	0	genome.wustl.edu	37	chr11	6648883	6648883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaggtctaggacaaaggctCctgatgggtccccatctgca	11	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	6648883	6648883	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.5387	p.G1796E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	49	0	0	20	13	38.24	-	-	-	T	6648883	C	T	6648883	3	4	228	1	0	0	0	0	1	0	0	0	4318	855	30	2	4541	2	DCHS1	11	6648883	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	195739	6648883	128357633	747	14853										
DCHS1	0	genome.wustl.edu	37	chr11	6652635	6652635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccggaggcacgcggtctgGtacctgtgggaacacaactc	13	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	6652635	6652635	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.3679	p.P1227S	0.985	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	174	0	0	85	54	38.85	-	-	-	A	6652635	G	A	6652635	3	1	228	1	0	0	0	0	1	0	0	0	4318	1261	44	4	6273	4	DCHS1	11	6652635	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3752	6652635	128353881	748	14854										
DKK3	0	genome.wustl.edu	37	chr11	11988608	11988608	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcagtgaccccagacacacAgctggtctccacagcactca	8	16	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	11988608	11988608	A	T	SNP	DKK3	ENST00000326932	human	ensembl	69_37n	-1	known	missense	c.566	p.L189Q	1.000	pfam_Dickkopf_N	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165	83	0	0	53	32	37.65	-	-	-	T	11988608	A	T	11988608	3	4	228	1	0	0	0	0	1	0	0	0	4582	188	7	5	498	5	DKK3	11	11988608	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5335973	11988608	123017908	749	14855										
PIK3C2A	0	genome.wustl.edu	37	chr11	17191032	17191033	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacatcaatatctaatgctcINSttttttgggaatctgattca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	17191032	17191033	-	T	INS	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	frame_shift_ins	c.257_256	p.R86fs	0.761:0.979	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	406	0	0	293	144	32.95	-	-	-	T	17191033	-	T	17191032	7	5	228	1	0	1	1	0	0	0	0	0	11983	913	32	0	4931	0	PIK3C2A	11	17191032	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	5202424	17191032	117815484	750	14856										
HPS5	0	genome.wustl.edu	37	chr11	18308138	18308138	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaagaggacttcttctgtacCtgggataaccttcatcatcc	7	11	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	18308138	18308138	C	A	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.2837	p.R946M	1.000	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	122	0	0	53	40	42.55	-	-	-	A	18308138	C	A	18308138	3	1	228	1	0	0	0	0	1	0	0	0	7393	695	24	4	572	4	HPS5	11	18308138	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1117106	18308138	116698378	751	14857										
HPS5	0	genome.wustl.edu	37	chr11	18309441	18309441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatatacaggacaacttaccGggtagcataaacaaccaaca	6	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	18309441	18309441	G	A	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.2560	p.R854W	0.340	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	134	1	0.74	74	61	45.19	-	-	-	A	18309441	G	A	18309441	3	1	228	1	0	0	0	0	1	0	0	0	7393	1130	39	1	857	1	HPS5	11	18309441	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1303	18309441	116697075	752	14858										
E2F8	0	genome.wustl.edu	37	chr11	19252333	19252333	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacagttctcttttgaagacCgtctcacctccaaatcagag	6	13	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	19252333	19252333	C	A	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	missense	c.1115	p.R372L	0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	90	0	0	46	34	42.5	-	-	-	A	19252333	C	A	19252333	3	1	228	1	0	0	0	0	1	0	0	0	4908	652	23	3	1512	3	E2F8	11	19252333	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	942892	19252333	115754183	753	14859										
NAV2	0	genome.wustl.edu	37	chr11	19954975	19954975	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagccatgaagccggccccCaacaatcagaagtccatgct	9	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	19954975	19954975	C	T	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	silent	c.1254	p.P418	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	150	0	0	108	76	41.3	-	-	-	T	19954975	C	T	19954975	2	4	228	1	0	0	0	0	0	0	0	1	10256	581	21	4		4	NAV2	11	19954975	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	702642	19954975	115051541	754	14860										
KIF18A	0	genome.wustl.edu	37	chr11	28058056	28058056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctggtgtatatacaatagGctgaagttctttgctaagag	10	5	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	28058056	28058056	G	A	SNP	KIF18A	ENST00000263181	human	ensembl	69_37n	-1	known	missense	c.2104	p.P702S	0.977	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621	191	0	0	109	70	38.89	-	-	-	A	28058056	G	A	28058056	3	1	228	1	0	0	0	0	1	0	0	0	8332	1203	42	4	608	4	KIF18A	11	28058056	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8103081	28058056	106948460	755	14861										
PAX6	0	genome.wustl.edu	37	chr11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatgtgtgtctgcatatgtGggggggtgtaggtatcataa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	69_37n	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	45	0	0	30	23	43.4	-	-	-	-	31812317	G	-	31812317	7	5	228	1	0	1	0	1	0	0	0	0	11556	1348	47	0	152	0	PAX6	11	31812317	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	3754261	31812317	103194199	756	14862										
QSER1	0	genome.wustl.edu	37	chr11	32954424	32954424	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttacaaatgagaattacccTgctcaaacaagagatctgtc	7	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	32954424	32954424	T	C	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	silent	c.1233	p.P411	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	251	0	0	112	74	39.78	-	-	-	C	32954424	T	C	32954424	2	2	228	1	0	0	0	0	0	0	0	1	12965	1567	55	5		5	QSER1	11	32954424	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1142107	32954424	102052092	757	14863										
ACCSL	0	genome.wustl.edu	37	chr11	44070044	44070044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagtcgagcttccaggactAcaatgcctaccaaaaagata	7	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	44070044	44070044	A	G	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.458	p.Y153C	0.069	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	119	0	0	64	37	36.63	-	-	-	G	44070044	A	G	44070044	3	3	228	1	0	0	0	0	1	0	0	0	134	391	14	5	460	5	ACCSL	11	44070044	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	11115620	44070044	90936472	758	14864										
AMBRA1	0	genome.wustl.edu	37	chr11	46419038	46419038	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcccctagggcctgcagcgtCccccctgctgctgccaccat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	46419038	46419038	C	-	DEL	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	frame_shift_del	c.3859	p.D1287fs	0.977	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	59	0	0	38	21	35.59	-	-	-	-	46419038	C	-	46419038	7	5	228	1	0	1	0	1	0	0	0	0	565	855	30	0	41	0	AMBRA1	11	46419038	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	2348994	46419038	88587478	759	14865										
AMBRA1	0	genome.wustl.edu	37	chr11	46455180	46455180	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accgaaatggcattgggaccTgagggccaacaaaacagaga	12	9	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	46455180	46455180	T	C	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	splice_site	c.2822-2	e13-2	1.000	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497	62	0	0	24	18	42.86	-	-	-	C	46455180	T	C	46455180	5	2	228	1	0	0	0	0	0	0	1	0	565	1594	55	5	1096	5	AMBRA1	11	46455180	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	36142	46455180	88551336	760	14866										
SPI1	0	genome.wustl.edu	37	chr11	47376990	47376990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccttgtgcttggacgagaActggaaggtgcccttgtcct	12	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	47376990	47376990	A	G	SNP	SPI1	ENST00000227163	human	ensembl	69_37n	-1	known	missense	c.604	p.F202L	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPI1	HGNC	ENSG00000066336	31	0	0	13	5	27.78	-	-	-	G	47376990	A	G	47376990	3	3	228	1	0	0	0	0	1	0	0	0	15140	43	2	5	215	5	SPI1	11	47376990	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	921810	47376990	87629526	761	14867										
NUP160	0	genome.wustl.edu	37	chr11	47861824	47861824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtatgcttggtgagggataaCgagaatccaaatttccttca	10	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	47861824	47861824	C	T	SNP	NUP160	ENST00000526870	human	ensembl	69_37n	-1	known	missense	c.631	p.V211I	0.012	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	171	0	0	88	76	46.34	-	-	-	T	47861824	C	T	47861824	3	4	228	1	0	0	0	0	1	0	0	0	10830	551	19	1		1	NUP160	11	47861824	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	484834	47861824	87144692	762	14868										
PTPRJ	0	genome.wustl.edu	37	chr11	48164577	48164577	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacggacccatcaaagcctaTgctgtcattctcaccaccgg	7	16	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	48164577	48164577	T	C	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	silent	c.2550	p.Y850	0.315	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	187	0	0	144	78	35.14	-	-	-	C	48164577	T	C	48164577	2	2	228	1	0	0	0	0	0	0	0	1	12887	1471	51	5		5	PTPRJ	11	48164577	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	302753	48164577	86841939	763	14869										
OR4C12	0	genome.wustl.edu	37	chr11	50003192	50003192	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttctgagtgtgtagaccacGggatttaacattgggaccac	11	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	50003192	50003192	G	A	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	silent	c.846	p.P282	0.857	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	256	0	0	116	86	42.57	-	-	-	A	50003192	G	A	50003192	2	1	228	1	0	0	0	0	0	0	0	1	11119	1103	39	1		1	OR4C12	11	50003192	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1838615	50003192	85003324	764	14870										
ZFP91	0	genome.wustl.edu	37	chr11	58381720	58381720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcaccacattaaataccagCatttgctgaagaagaaatat	6	8	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	58381720	58381720	C	T	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1006	p.H336Y	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	194	0	0	105	63	37.5	-	-	-	T	58381720	C	T	58381720	3	4	228	1	0	0	0	0	1	0	0	0	17751	710	25	4	1040	4	ZFP91	11	58381720	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8378528	58381720	76624796	765	14871										
MS4A14	0	genome.wustl.edu	37	chr11	60184016	60184016	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatcagcaaagcaaaggctgGcaatctccaaagcagaaatc	9	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	60184016	60184016	G	A	SNP	MS4A14	ENST00000300187	human	ensembl	69_37n	1	known	nonsense	c.1575	p.W525*	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	294	0	0	178	125	41.12	-	-	-	A	60184016	G	A	60184016	4	1	228	1	0	0	0	0	0	1	0	0	9930	1212	42	4	1593	4	MS4A14	11	60184016	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1802296	60184016	74822500	766	14872										
MS4A12	0	genome.wustl.edu	37	chr11	60269505	60269505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcatccaaggagctttcccGttgtctggtaagttagactg	11	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	60269505	60269505	G	A	SNP	MS4A12	ENST00000016913	human	ensembl	69_37n	1	known	missense	c.464	p.R155H	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203	372	0	0	230	167	41.96	-	-	-	A	60269505	G	A	60269505	3	1	228	1	0	0	0	0	1	0	0	0	9928	1145	40	1	474	1	MS4A12	11	60269505	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	85489	60269505	74737011	767	14873										
INTS5	0	genome.wustl.edu	37	chr11	62416467	62416467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcacagctgggggcttgaggCaatccacaagctctccagag	13	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	62416467	62416467	C	T	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.1085	p.C362Y	0.993	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	58	0	0	54	27	32.93	-	-	-	T	62416467	C	T	62416467	3	4	228	1	0	0	0	0	1	0	0	0	7835	710	25	4	1978	4	INTS5	11	62416467	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2146962	62416467	72590049	768	14874										
C11orf48	0	genome.wustl.edu	37	chr11	62437499	62437499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcttctccctggcacaaggGccatggtggtgattcttaga	12	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	62437499	62437499	G	A	SNP	C11orf48	ENST00000431002	human	ensembl	69_37n	-1	known	missense	c.5	p.A2V	0.999	NULL	NULL	-	no_errors	C11orf48	HGNC	ENSG00000162194	51	0	0	47	34	41.98	-	-	-	A	62437499	G	A	62437499	3	1	228	1	0	0	0	0	1	0	0	0	1655	1203	42	4	810	4	C11orf48	11	62437499	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	21032	62437499	72569017	769	14875										
NXF1	0	genome.wustl.edu	37	chr11	62559918	62559918	+	RNA	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atatccaaggactatttacaGgggggactgcttctgaggca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	62559918	62559918	G	-	DEL	NXF1	ENST00000533048	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.680	-	-	-	no_errors	NXF1	HGNC	ENSG00000162231	337	0	0	194	101	33.22	-	-	-	-	62559918	G	-	62559918	6	5	228	0	1	1	0	1	0	0	0	0	10855	1015	35	0		0	NXF1	11	62559918	RNA	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	122419	62559918	72446598	770	14876										
ZFPL1	0	genome.wustl.edu	37	chr11	64854823	64854823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgatacgcgggatgatgacCggacaccaggcctccatgga	13	11	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	64854823	64854823	C	T	SNP	ZFPL1	ENST00000294258	human	ensembl	69_37n	1	known	missense	c.664	p.R222W	0.564	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300	51	0	0	46	21	31.34	-	-	-	T	64854823	C	T	64854823	3	4	228	1	0	0	0	0	1	0	0	0	17752	643	23	1	686	1	ZFPL1	11	64854823	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2294905	64854823	70151693	771	14877										
MRPL49	0	genome.wustl.edu	37	chr11	64893553	64893553	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taatgtgggagaccaaatagGgatcaccaggctaatggggg	15	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	64893553	64893553	G	A	SNP	MRPL49	ENST00000524482	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPL49	HGNC	ENSG00000149792	8	0	0	9	6	40	-	-	-	A	64893553	G	A	64893553	1	1	228	0	1	0	0	0	0	0	0	0	9885	1247	43	4		4	MRPL49	11	64893553	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	38730	64893553	70112963	772	14878										
SYVN1	0	genome.wustl.edu	37	chr11	64899060	64899060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagcaccatcgtcatcaggAtggcatactgaagggagagg	14	8	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	64899060	64899060	A	G	SNP	SYVN1	ENST00000377190	human	ensembl	69_37n	-1	known	missense	c.539	p.I180T	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298	48	0	0	18	13	41.94	-	-	-	G	64899060	A	G	64899060	3	3	228	1	0	0	0	0	1	0	0	0	15579	333	12	5	1354	5	SYVN1	11	64899060	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	5507	64899060	70107456	773	14879										
LTBP3	0	genome.wustl.edu	37	chr11	65314282	65314283	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctcaccgcgacaggccccgINScccccctggctgcggtagcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	65314282	65314283	-	C	INS	LTBP3	ENST00000301873	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2217_2216	p.G740fs	1.000:1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	20	0	0	13	8	38.1	-	-	-	C	65314283	-	C	65314282	7	5	228	1	0	1	1	0	0	0	0	0	9141	1074	38	0	1750	0	LTBP3	11	65314282	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	415222	65314282	69692234	774	14880										
PCNXL3	0	genome.wustl.edu	37	chr11	65396991	65396991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgtctgttctgggtcttagGcgctgatgacaacaacctca	10	12	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	65396991	65396991	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.4001	p.G1334D	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	14	0	0	12	5	29.41	-	-	-	A	65396991	G	A	65396991	3	1	228	1	0	0	0	0	1	0	0	0	11666	1217	42	4	4103	4	PCNXL3	11	65396991	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	82709	65396991	69609525	775	14881										
RELA	0	genome.wustl.edu	37	chr11	65427200	65427200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggcctgcctgatgggtcccGcactgtcacctggaagcaga	14	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	65427200	65427200	G	A	SNP	RELA	ENST00000406246	human	ensembl	69_37n	-1	known	missense	c.496	p.R166W	0.974	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	RELA	HGNC	ENSG00000173039	69	0	0	36	24	40	-	-	-	A	65427200	G	A	65427200	3	1	228	1	0	0	0	0	1	0	0	0	13299	1086	38	1	1183	1	RELA	11	65427200	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	30209	65427200	69579316	776	14882										
KLC2	0	genome.wustl.edu	37	chr11	66033664	66033664	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaagaagctgcaggggggcaCcccccaggagccccctaacc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	66033664	66033664	C	-	DEL	KLC2	ENST00000316924	human	ensembl	69_37n	1	known	frame_shift_del	c.1703	p.Q570fs	0.984	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	50	0	0	30	19	37.25	-	-	-	-	66033664	C	-	66033664	7	5	228	1	0	1	0	1	0	0	0	0	8387	507	18	0	1753	0	KLC2	11	66033664	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	606464	66033664	68972852	777	14883										
DPP3	0	genome.wustl.edu	37	chr11	66260079	66260079	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atccccatcttccagcccagGgtgactgcatacagtaggca	9	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	66260079	66260079	G	T	SNP	DPP3	ENST00000525738	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.418	-	-	-	no_errors	DPP3	HGNC	ENSG00000254986	30	0	0	21	11	34.38	-	-	-	T	66260079	G	T	66260079	1	4	228	0	1	0	0	0	0	0	0	0	4763	1247	43	4		4	DPP3	11	66260079	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	226415	66260079	68746437	778	14884										
CARNS1	0	genome.wustl.edu	37	chr11	67191510	67191510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcctggcttcactgagacggCggcctgcatgcccaccgggc	14	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	67191510	67191510	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	missense	c.2291	p.A764V	0.867	pfscan_ATP-grasp	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	10	0	0	6	10	62.5	-	-	-	T	67191510	C	T	67191510	3	4	228	1	0	0	0	0	1	0	0	0	2681	768	27	1	2325	1	CARNS1	11	67191510	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	931431	67191510	67815006	779	14885										
ACY3	0	genome.wustl.edu	37	chr11	67410227	67410227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctcggggcaggggtcagcgCgggcatggcaggcacggtga	21	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	67410227	67410227	C	T	SNP	ACY3	ENST00000255082	human	ensembl	69_37n	-1	known	missense	c.928	p.A310T	0.000	pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ACY3	HGNC	ENSG00000132744	18	0	0	11	10	47.62	-	-	-	T	67410227	C	T	67410227	3	4	228	1	0	0	0	0	1	0	0	0	227	768	27	1	35	1	ACY3	11	67410227	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	218717	67410227	67596289	780	14886										
IGHMBP2	0	genome.wustl.edu	37	chr11	68704127	68704127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggagagccaagatggcgtgGaccacttccgggccatgata	14	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	68704127	68704127	G	A	SNP	IGHMBP2	ENST00000255078	human	ensembl	69_37n	1	known	missense	c.2179	p.D727N	0.208	smart_R3H_ss-bd,pfscan_R3H_ss-bd	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740	30	0	0	8	15	65.22	-	-	-	A	68704127	G	A	68704127	3	1	228	1	0	0	0	0	1	0	0	0	7645	1174	41	2	2229	2	IGHMBP2	11	68704127	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1293900	68704127	66302389	781	14887										
NUMA1	0	genome.wustl.edu	37	chr11	71716290	71716290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggcctcaccctggactccaGgggatagcaggtcttcagat	12	12	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	71716290	71716290	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	silent	c.5818	p.L1940	0.975	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	29	0	0	12	13	52	-	-	-	A	71716290	G	A	71716290	2	1	228	1	0	0	0	0	0	0	0	1	10823	991	35	4		4	NUMA1	11	71716290	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3012163	71716290	63290226	782	14888										
NUMA1	0	genome.wustl.edu	37	chr11	71727202	71727202	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggccccgctcagcaagcagCttggcttcctgctggcctcg	12	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	71727202	71727202	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	silent	c.1347	p.K449	0.030	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	45	0	0	35	22	38.6	-	-	-	T	71727202	C	T	71727202	2	4	228	1	0	0	0	0	0	0	0	1	10823	796	28	4		4	NUMA1	11	71727202	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	10912	71727202	63279314	783	14889										
INPPL1	0	genome.wustl.edu	37	chr11	71941856	71941856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagaagcgggaggccttctGccagctgttgcagctcatga	13	12	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	71941856	71941856	G	A	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	missense	c.1214	p.C405Y	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	50	0	0	26	27	50.94	-	-	-	A	71941856	G	A	71941856	3	1	228	1	0	0	0	0	1	0	0	0	7815	1319	46	4	1256	4	INPPL1	11	71941856	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	214654	71941856	63064660	784	14890										
ATG16L2	0	genome.wustl.edu	37	chr11	72535783	72535785	+	In_Frame_Del	DEL	AAG	AAG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acccaccttaccccagttttAagaagaggagaggtcactca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	72535783	72535785	AAG	-	DEL	ATG16L2	ENST00000321297	human	ensembl	69_37n	1	known	in_frame_del	c.892_894	p.K299in_frame_del	1.000:1.000:1.000	NULL	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	31	0	0	20	6	22.22	-	-	-	-	72535785	AAG	-	72535783	7	5	228	1	0	1	0	1	0	0	0	0	1096	363	13	0	926	0	ATG16L2	11	72535783	In_Frame_Del	DEL	AAG	TCGA-A8-A09Z-01A-11W-A019-09	593927	72535783	62470733	785	14891										
C11orf30	0	genome.wustl.edu	37	chr11	76158040	76158040	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggatgaatgcaaaagaattCttcgaaaattgggtatgacg	12	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	76158040	76158040	C	G	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.58	p.L20V	1.000	pfam_ENT_N,pfscan_ENT_N	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	115	0	0	58	53	47.75	-	-	-	G	76158040	C	G	76158040	3	3	228	1	0	0	0	0	1	0	0	0	1647	913	32	2	60	2	C11orf30	11	76158040	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3622257	76158040	58848476	786	14892										
C11orf82	0	genome.wustl.edu	37	chr11	82645258	82645258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttagcagcacctcagctgCaccctattcttggacctgat	7	14	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	82645258	82645258	C	T	SNP	C11orf82	ENST00000430323	human	ensembl	69_37n	1	known	missense	c.2878	p.H960Y	0.002	NULL	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	-	no_errors	C11orf82	HGNC	ENSG00000165490	204	0	0	89	69	43.67	-	-	-	T	82645258	C	T	82645258	3	4	228	1	0	0	0	0	1	0	0	0	1676	710	25	4	2892	4	C11orf82	11	82645258	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6487218	82645258	52361258	787	14893										
SYTL2	0	genome.wustl.edu	37	chr11	85435356	85435356	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcactgtccctgtcctctGggggggttacagttttaatg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	85435356	85435356	G	-	DEL	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	frame_shift_del	c.3716	p.P1239fs	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	263	0	0	128	102	43.97	-	-	-	-	85435356	G	-	85435356	7	5	228	1	0	1	0	1	0	0	0	0	15575	1348	47	0	1726	0	SYTL2	11	85435356	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	2790098	85435356	49571160	788	14894										
ME3	0	genome.wustl.edu	37	chr11	86158119	86158119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgctgacctcggtgacccgGtagcacttctcagccgtgca	11	16	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	86158119	86158119	G	A	SNP	ME3	ENST00000359636	human	ensembl	69_37n	-1	known	silent	c.1368	p.Y456	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376	38	0	0	27	15	35.71	-	-	-	A	86158119	G	A	86158119	2	1	228	1	0	0	0	0	0	0	0	1	9490	1256	44	4		4	ME3	11	86158119	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	722763	86158119	48848397	789	14895										
FAT3	0	genome.wustl.edu	37	chr11	92523114	92523114	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcttttaactacaggtattTatcaaagtgctggataataa	6	5	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	92523114	92523114	T	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.4341	p.F1447	0.991	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	342	0	0	172	109	38.79	-	-	-	C	92523114	T	C	92523114	2	2	228	1	0	0	0	0	0	0	0	1	5737	1751	61	5		5	FAT3	11	92523114	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	6364995	92523114	42483402	790	14896										
FAT3	0	genome.wustl.edu	37	chr11	92614028	92614028	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acactttcatctgcaattgtAaagctgggctcactggagtc	9	10	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	92614028	92614028	A	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.12259	p.K4087E	0.961	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	319	0	0	185	118	38.94	-	-	-	G	92614028	A	G	92614028	3	3	228	1	0	0	0	0	1	0	0	0	5737	363	13	5	12345	5	FAT3	11	92614028	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	90914	92614028	42392488	791	14897										
CCDC82	0	genome.wustl.edu	37	chr11	96117385	96117387	+	In_Frame_Del	DEL	TCT	TCT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctttttcctcgcttgatgTcttcttcttctaaatcatcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	96117385	96117387	TCT	-	DEL	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	in_frame_del	c.527_525	p.E175in_frame_del	0.005:0.012:0.029	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	286	0	0	198	90	31.03	-	-	-	-	96117387	TCT	-	96117385	7	5	228	1	0	1	0	1	0	0	0	0	2883	1667	58	0	1135	0	CCDC82	11	96117385	In_Frame_Del	DEL	TCT	TCGA-A8-A09Z-01A-11W-A019-09	3503357	96117385	38889131	792	14898										
MMP3	0	genome.wustl.edu	37	chr11	102712947	102712947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catctccattaatccctggcCcaggggcataggcatgggcc	11	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	102712947	102712947	C	A	SNP	MMP3	ENST00000299855	human	ensembl	69_37n	-1	known	missense	c.563	p.G188V	0.503	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP3	HGNC	ENSG00000149968	106	0	0	77	62	44.6	-	-	-	A	102712947	C	A	102712947	3	1	228	1	0	0	0	0	1	0	0	0	9738	623	22	4	898	4	MMP3	11	102712947	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6595562	102712947	32293569	793	14899										
CASP4	0	genome.wustl.edu	37	chr11	104819396	104819396	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctctgacccacagttccccAcggtttgctatggagacatt	8	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	104819396	104819396	A	G	SNP	CASP4	ENST00000444739	human	ensembl	69_37n	-1	known	silent	c.789	p.R263	0.002	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954	234	0	0	131	90	40.72	-	-	-	G	104819396	A	G	104819396	2	3	228	1	0	0	0	0	0	0	0	1	2698	146	6	5		5	CASP4	11	104819396	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2106449	104819396	30187120	794	14900										
C11orf65	0	genome.wustl.edu	37	chr11	108276182	108276182	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcatccactctatttttctAagttttcttttcttttccaa	1	11	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	108276182	108276182	A	G	SNP	C11orf65	ENST00000524755	human	ensembl	69_37n	-1	putative	missense	c.29	p.L10S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C11orf65	HGNC	ENSG00000166323	137	0	0	79	57	41.91	-	-	-	G	108276182	A	G	108276182	3	3	228	1	0	0	0	0	1	0	0	0	1666	349	13	5	423	5	C11orf65	11	108276182	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3456786	108276182	26730334	795	14901										
C11orf88	0	genome.wustl.edu	37	chr11	111385651	111385651	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggatctcggcgtcgatgtatCcccctagcgaatctcagctg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	111385651	111385651	C	-	DEL	C11orf88	ENST00000529167	human	ensembl	69_37n	1	known	frame_shift_del	c.142	p.P49fs	0.891	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644	46	0	0	30	15	33.33	-	-	-	-	111385651	C	-	111385651	7	5	228	1	0	1	0	1	0	0	0	0	1681	855	30	0	144	0	C11orf88	11	111385651	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	3109469	111385651	23620865	796	14902										
LAYN	0	genome.wustl.edu	37	chr11	111420425	111420425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catcggcacccgctggcatcGgaggcccctacatgttccag	11	16	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	111420425	111420425	G	A	SNP	LAYN	ENST00000375615	human	ensembl	69_37n	1	known	missense	c.490	p.G164R	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381	131	0	0	57	37	39.36	-	-	-	A	111420425	G	A	111420425	3	1	228	1	0	0	0	0	1	0	0	0	8703	1117	39	1	476	1	LAYN	11	111420425	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	34774	111420425	23586091	797	14903										
SCN2B	0	genome.wustl.edu	37	chr11	118039306	118039306	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcccaggactcaccatctcCtcagagcagttgttgcactc	8	15	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	118039306	118039306	C	A	SNP	SCN2B	ENST00000278947	human	ensembl	69_37n	-1	known	missense	c.231	p.E77D	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	SCN2B	HGNC	ENSG00000149575	121	0	0	91	65	41.67	-	-	-	A	118039306	C	A	118039306	3	1	228	1	0	0	0	0	1	0	0	0	14005	680	24	4	428	4	SCN2B	11	118039306	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6618881	118039306	16967210	798	14904										
AMICA1	0	genome.wustl.edu	37	chr11	118068730	118068731	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctccccttcacatctttcINSaaaatggcagggtttttctt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	118068730	118068731	-	A	INS	AMICA1	ENST00000356289	human	ensembl	69_37n	-1	known	frame_shift_ins	c.988_987	p.E329fs	0.002:0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMICA1	HGNC	ENSG00000160593	192	0	0	120	62	34.07	-	-	-	A	118068731	-	A	118068730	7	5	228	1	0	1	1	0	0	0	0	0	574	835	29	0	208	0	AMICA1	11	118068730	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	29424	118068730	16937786	799	14905										
MPZL2	0	genome.wustl.edu	37	chr11	118133340	118133340	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcccactcatgggttggaaGggatctatgtggtagtagaa	14	7	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	118133340	118133340	G	T	SNP	MPZL2	ENST00000438295	human	ensembl	69_37n	-1	known	silent	c.249	p.P83	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL2	HGNC	ENSG00000149573	98	0	0	77	52	40.31	-	-	-	T	118133340	G	T	118133340	2	4	228	1	0	0	0	0	0	0	0	1	9822	987	35	4		4	MPZL2	11	118133340	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	64610	118133340	16873176	800	14906										
NLRX1	0	genome.wustl.edu	37	chr11	119050497	119050497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcgagaggaggactactaCaacgatgatgttctggacca	11	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	119050497	119050497	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	silent	c.1767	p.Y589	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	53	0	0	39	24	38.1	-	-	-	T	119050497	C	T	119050497	2	4	228	1	0	0	0	0	0	0	0	1	10557	489	17	4		4	NLRX1	11	119050497	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	917157	119050497	15956019	801	14907										
PVRL1	0	genome.wustl.edu	37	chr11	119535688	119535688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctccaccgccctcctcctcCtcctcctcctcctcatagct	2	25	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	119535688	119535688	C	A	SNP	PVRL1	ENST00000264025	human	ensembl	69_37n	-1	known	missense	c.1323	p.E441D	1.000	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL1	HGNC	ENSG00000110400	36	0	0	48	21	30.43	-	-	-	A	119535688	C	A	119535688	3	1	228	1	0	0	0	0	1	0	0	0	12922	680	24	4	620	4	PVRL1	11	119535688	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	485191	119535688	15470828	802	14908										
TBCEL	0	genome.wustl.edu	37	chr11	120916474	120916474	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgaaaattttccttatcgCcgtggcccggggatgggagt	13	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	120916474	120916474	C	T	SNP	TBCEL	ENST00000422003	human	ensembl	69_37n	1	known	silent	c.75	p.R25	1.000	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114	96	0	0	52	34	39.53	-	-	-	T	120916474	C	T	120916474	2	4	228	1	0	0	0	0	0	0	0	1	15730	726	26	4		4	TBCEL	11	120916474	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1380786	120916474	14090042	803	14909										
TECTA	0	genome.wustl.edu	37	chr11	121000430	121000430	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacaaaaacagtacgacagtGgagtccaagggcgtggtgac	13	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	121000430	121000430	G	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	silent	c.2451	p.V817	0.946	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	218	0	0	147	120	44.94	-	-	-	T	121000430	G	T	121000430	2	4	228	1	0	0	0	0	0	0	0	1	15842	1335	47	4		4	TECTA	11	121000430	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	83956	121000430	14006086	804	14910										
TMEM225	0	genome.wustl.edu	37	chr11	123753877	123753878	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttacgtgacgtgtttggacINSttttttgtttagggaattca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	123753877	123753878	-	T	INS	TMEM225	ENST00000375026	human	ensembl	69_37n	-1	known	frame_shift_ins	c.646_645	p.V215fs	0.000:0.000	NULL	NULL	-	no_errors	TMEM225	HGNC	ENSG00000204300	155	0	0	125	15	10.71	-	-	-	T	123753878	-	T	123753877	7	5	228	1	0	1	1	0	0	0	0	0	16242	565	20	0	35	0	TMEM225	11	123753877	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	2753447	123753877	11252639	805	14911										
OR6T1	0	genome.wustl.edu	37	chr11	123814090	123814090	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggcaaaggacccagaggaaTccagctagccaggaggccag	15	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	123814090	123814090	T	A	SNP	OR6T1	ENST00000321252	human	ensembl	69_37n	-1	known	silent	c.456	p.G152	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	81	0	0	39	27	40.91	-	-	-	A	123814090	T	A	123814090	2	1	228	1	0	0	0	0	0	0	0	1	11283	1422	50	5		5	OR6T1	11	123814090	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	60213	123814090	11192426	806	14912										
OR10G8	0	genome.wustl.edu	37	chr11	123900673	123900673	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccgagtgtttcctctacaGggtcatgtcctgtgatcgct	10	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	123900673	123900673	G	T	SNP	OR10G8	ENST00000431524	human	ensembl	69_37n	1	known	missense	c.344	p.R115M	0.002	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10G8	HGNC	ENSG00000234560	398	0	0	261	166	38.79	-	-	-	T	123900673	G	T	123900673	3	4	228	1	0	0	0	0	1	0	0	0	10976	1000	35	4	346	4	OR10G8	11	123900673	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	86583	123900673	11105843	807	14913										
PANX3	0	genome.wustl.edu	37	chr11	124489316	124489316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttgctcatcttcacctccGccacttacctataccttggt	4	16	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	124489316	124489316	G	A	SNP	PANX3	ENST00000284288	human	ensembl	69_37n	1	known	missense	c.664	p.A222T	0.545	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143	114	0	0	71	33	31.43	-	-	-	A	124489316	G	A	124489316	3	1	228	1	0	0	0	0	1	0	0	0	11495	1087	38	1	678	1	PANX3	11	124489316	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	588643	124489316	10517200	808	14914										
FEZ1	0	genome.wustl.edu	37	chr11	125315907	125315907	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgtttaaatacatgtcggaGgttacatggtctcatgcagt	10	7	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	125315907	125315907	G	T	SNP	FEZ1	ENST00000526507	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FEZ1	HGNC	ENSG00000149557	75	0	0	35	37	51.39	-	-	-	T	125315907	G	T	125315907	1	4	228	0	1	0	0	0	0	0	0	0	5869	1015	35	4		4	FEZ1	11	125315907	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	826591	125315907	9690609	809	14915										
DCPS	0	genome.wustl.edu	37	chr11	126201342	126201342	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgccacagagaaacaccTgcagaagtacctgcgccagg	10	15	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	126201342	126201342	T	C	SNP	DCPS	ENST00000263579	human	ensembl	69_37n	1	known	missense	c.419	p.L140P	1.000	pfam_Scavenger_mRNA_decap_enz,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_Scavenger_mRNA_decap_enz	pfam_Scavenger_mRNA_decap_enz,superfamily_HIT-like,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_Scavenger_mRNA_decap_enz	-	no_errors	DCPS	HGNC	ENSG00000110063	167	0	0	79	61	43.57	-	-	-	C	126201342	T	C	126201342	3	2	228	1	0	0	0	0	1	0	0	0	4332	1580	55	5	429	5	DCPS	11	126201342	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	885435	126201342	8805174	810	14916										
APLP2	0	genome.wustl.edu	37	chr11	130007180	130007180	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggagttgtaccacccaatgAaaaaaggttggtttgtccaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	130007180	130007180	A	-	DEL	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	frame_shift_del	c.1867	p.G625fs	1.000	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	183	0	0	132	79	37.26	-	-	-	-	130007180	A	-	130007180	7	5	228	1	0	1	0	1	0	0	0	0	781	247	9	0	1921	0	APLP2	11	130007180	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	3805838	130007180	4999336	811	14917										
GLB1L3	0	genome.wustl.edu	37	chr11	134158735	134158735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcggtgcaagtggagaatgAgtatggctcattcaataagg	14	6	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	11	134158735	134158735	A	G	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.680	p.E227G	0.998	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	51	0	0	35	22	37.93	-	-	-	G	134158735	A	G	134158735	3	3	228	1	0	0	0	0	1	0	0	0	6482	304	11	5	706	5	GLB1L3	11	134158735	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4151555	134158735	847781	812	14918										
KDM5A	0	genome.wustl.edu	37	chr12	394653	394653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttaagatcctccattggtAgtttgtagctcattatgaag	8	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	394653	394653	A	G	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.5042	p.L1681P	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	242	0	0	92	59	39.07	-	-	-	G	394653	A	G	394653	3	3	228	1	0	0	0	0	1	0	0	0	8186	420	15	5	34	5	KDM5A	12	394653	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09		394653	133457242	813	14919										
WNK1	0	genome.wustl.edu	37	chr12	977171	977171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtagccatttcccagcggcGtaagagcacctccttcctgg	10	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	977171	977171	G	A	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.2534	p.R845H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	278	0	0	158	108	40.45	-	-	-	A	977171	G	A	977171	3	1	228	1	0	0	0	0	1	0	0	0	17474	1145	40	1	2572	1	WNK1	12	977171	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	582518	977171	132874724	814	14920										
TEAD4	0	genome.wustl.edu	37	chr12	3131077	3131077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcgacccctacctcgaagCcgtggacatccgccaaatct	8	17	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	3131077	3131077	C	T	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	1	known	missense	c.791	p.A264V	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	107	0	0	75	46	38.02	-	-	-	T	3131077	C	T	3131077	3	4	228	1	0	0	0	0	1	0	0	0	15836	739	26	4	821	4	TEAD4	12	3131077	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2153906	3131077	130720818	815	14921										
PRMT8	0	genome.wustl.edu	37	chr12	3647746	3647746	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgacagctaaggggtgctGgaggcccctgtgaccttgac	15	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	3647746	3647746	G	A	SNP	PRMT8	ENST00000261252	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.101	-	-	-	no_errors	PRMT8	HGNC	ENSG00000111218	48	0	0	22	15	40.54	-	-	-	A	3647746	G	A	3647746	1	1	228	0	1	0	0	0	0	0	0	0	12623	1363	47	4		4	PRMT8	12	3647746	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	516669	3647746	130204149	816	14922										
NDUFA9	0	genome.wustl.edu	37	chr12	4794379	4794379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taggctagcttacatcttggGcagagagatgcttatcacat	10	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	4794379	4794379	G	A	SNP	NDUFA9	ENST00000540688	human	ensembl	69_37n	1	putative	missense	c.128	p.G43D	0.000	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180	76	0	0	55	39	41.49	-	-	-	A	4794379	G	A	4794379	3	1	228	1	0	0	0	0	1	0	0	0	10344	1218	42	4		4	NDUFA9	12	4794379	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1146633	4794379	129057516	817	14923										
KCNA5	0	genome.wustl.edu	37	chr12	5153959	5153959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatggagcgcttccgcgagGatgagggcttcattaaagaa	13	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	5153959	5153959	G	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.646	p.D216Y	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	63	0	0	47	30	38.46	-	-	-	T	5153959	G	T	5153959	3	4	228	1	0	0	0	0	1	0	0	0	8060	1174	41	2	648	2	KCNA5	12	5153959	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	359580	5153959	128697936	818	14924										
CD4	0	genome.wustl.edu	37	chr12	6928464	6928464	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttcttctttgttcctgcaGccggtttcagaagacatgta	8	11	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	6928464	6928464	G	A	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	splice_site	c.1347-1	e9-1	0.999	-	-	-	no_errors	CD4	HGNC	ENSG00000010610	350	0	0	335	206	38.08	-	-	-	A	6928464	G	A	6928464	5	1	228	1	0	0	0	0	0	0	1	0	3043	985	34	4	1380	4	CD4	12	6928464	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1774505	6928464	126923431	819	14925										
EMG1	0	genome.wustl.edu	37	chr12	7080234	7080234	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattgtggtgctggaaggggCcagtctggagacagtcaagg	17	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	7080234	7080234	C	T	SNP	EMG1	ENST00000261406	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EMG1	HGNC	ENSG00000126749	21	0	0	14	12	46.15	-	-	-	T	7080234	C	T	7080234	1	4	228	0	1	0	0	0	0	0	0	0	5127	739	26	4		4	EMG1	12	7080234	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	151770	7080234	126771661	820	14926										
C1S	0	genome.wustl.edu	37	chr12	7177805	7177805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtggggcctttgctgtacaGgatcccaatgacaagaccaa	12	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	7177805	7177805	G	A	SNP	C1S	ENST00000328916	human	ensembl	69_37n	1	known	silent	c.1917	p.Q639	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1S	HGNC	ENSG00000182326	697	0	0	377	269	41.64	-	-	-	A	7177805	G	A	7177805	2	1	228	1	0	0	0	0	0	0	0	1	1993	991	35	4		4	C1S	12	7177805	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	97571	7177805	126674090	821	14927										
C1R	0	genome.wustl.edu	37	chr12	7244145	7244145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggggactgtgatcacagtgGttgtttcaaagttgttgggg	16	4	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	7244145	7244145	G	A	SNP	C1R	ENST00000290575	human	ensembl	69_37n	-1	known	missense	c.176	p.T59I	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1R	HGNC	ENSG00000159403	34	0	0	25	12	32.43	-	-	-	A	7244145	G	A	7244145	3	1	228	1	0	0	0	0	1	0	0	0	1991	1261	44	4	1702	4	C1R	12	7244145	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	66340	7244145	126607750	822	14928										
CDKN1B	0	genome.wustl.edu	37	chr12	12870962	12870962	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcgcaagtggaatttcgaTtttcagaatcacaaacccct							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	12870962	12870962	T	-	DEL	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_del	c.189	p.Q65fs	1.000	pfam_CDI	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	44	0	0	22	19	45.24	-	-	-	-	12870962	T	-	12870962	7	5	228	1	0	1	0	1	0	0	0	0	3188	1490	52	0	191	0	CDKN1B	12	12870962	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	5626817	12870962	120980933	823	14929										
CDKN1B	0	genome.wustl.edu	37	chr12	12871052	12871053	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctactacagacccccgcggINSccccccaaaggtgcctgcaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	12871052	12871053	-	C	INS	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_ins	c.279_280	p.K95fs	0.997:0.815	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	33	0	0	13	8	38.1	-	-	-	C	12871053	-	C	12871052	7	5	228	1	0	1	1	0	0	0	0	0	3188	1190	42	0	281	0	CDKN1B	12	12871052	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	90	12871052	120980843	824	14930										
EPS8	0	genome.wustl.edu	37	chr12	15811475	15811475	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttttggaaacagtcaagaaAttcatcaggaggtggaggtt	12	5	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	15811475	15811475	A	G	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	missense	c.982	p.F328L	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	272	0	0	141	114	44.71	-	-	-	G	15811475	A	G	15811475	3	3	228	1	0	0	0	0	1	0	0	0	5231	101	4	5	1530	5	EPS8	12	15811475	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2940423	15811475	118040420	825	14931										
PLCZ1	0	genome.wustl.edu	37	chr12	18852860	18852860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgacaagatcagataaggCcagagcaatttttagcttcc	8	8	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	18852860	18852860	C	T	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.1042	p.A348T	0.996	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	121	0	0	70	41	36.94	-	-	-	T	18852860	C	T	18852860	3	4	228	1	0	0	0	0	1	0	0	0	12118	739	26	4	808	4	PLCZ1	12	18852860	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3041385	18852860	114999035	826	14932										
PLCZ1	0	genome.wustl.edu	37	chr12	18852885	18852885	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcaatttttagcttcctggtCtaaaaataaaatgcagtaat	6	6	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	18852885	18852885	C	T	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	splice_site	c.1018-1	e9-1	0.418	-	-	-	no_errors	PLCZ1	HGNC	ENSG00000139151	122	0	0	47	39	45.35	-	-	-	T	18852885	C	T	18852885	5	4	228	1	0	0	0	0	0	0	1	0	12118	927	32	2	833	2	PLCZ1	12	18852885	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	25	18852885	114999010	827	14933										
PLEKHA5	0	genome.wustl.edu	37	chr12	19410381	19410381	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atttagacttcacgagcttcAaaaaaagttcataattttgg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	19410381	19410381	A	-	DEL	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	frame_shift_del	c.447	p.V152fs	0.510	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	226	0	0	108	80	41.67	-	-	-	-	19410381	A	-	19410381	7	5	228	1	0	1	0	1	0	0	0	0	12133	117	5	0	469	0	PLEKHA5	12	19410381	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	557496	19410381	114441514	828	14934										
ITPR2	0	genome.wustl.edu	37	chr12	26553193	26553193	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttcatactcttcatcagcTataaaaacacatacaaatat	1	10	5	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	26553193	26553193	T	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	splice_site	c.7400-2	e53-2	0.304	-	-	-	no_errors	ITPR2	HGNC	ENSG00000123104	254	0	0	154	106	40.77	-	-	-	C	26553193	T	C	26553193	5	2	228	1	0	0	0	0	0	0	1	0	7975	1536	53	5	727	5	ITPR2	12	26553193	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7142812	26553193	107298702	829	14935										
IPO8	0	genome.wustl.edu	37	chr12	30816578	30816578	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagaactaaatgcatgaagtAcccagcaagactgtattatt	7	7	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	30816578	30816578	A	G	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.1439	p.V480A	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	143	0	0	64	56	46.67	-	-	-	G	30816578	A	G	30816578	3	3	228	1	0	0	0	0	1	0	0	0	7852	391	14	5	1722	5	IPO8	12	30816578	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	4263385	30816578	103035317	830	14936										
ALG10	0	genome.wustl.edu	37	chr12	34179356	34179356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcctcatctcctgtctcctAgcaaaattaagacttttctt	3	12	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	34179356	34179356	A	G	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	1	known	missense	c.928	p.S310G	0.000	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	406	0	0	223	137	38.06	-	-	-	G	34179356	A	G	34179356	3	3	228	1	0	0	0	0	1	0	0	0	511	420	15	5	938	5	ALG10	12	34179356	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3362778	34179356	99672539	831	14937										
ABCD2	0	genome.wustl.edu	37	chr12	39980086	39980086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgatcccgaagacttccaaGagacatatatggcctttaaa	7	9	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	39980086	39980086	G	A	SNP	ABCD2	ENST00000308666	human	ensembl	69_37n	-1	known	missense	c.1660	p.L554F	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD2	HGNC	ENSG00000173208	83	0	0	64	32	33.33	-	-	-	A	39980086	G	A	39980086	3	1	228	1	0	0	0	0	1	0	0	0	61	942	33	2	578	2	ABCD2	12	39980086	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5800730	39980086	93871809	832	14938										
ANP32D	0	genome.wustl.edu	37	chr12	48866491	48866491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttagagctgcggaacaggaCgccctccgatgtgaaagaac	12	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	48866491	48866491	C	T	SNP	ANP32D	ENST00000266594	human	ensembl	69_37n	1	known	missense	c.44	p.T15M	1.000	NULL	NULL	-	no_errors	ANP32D	HGNC	ENSG00000139223	379	0	0	227	157	40.78	-	-	-	T	48866491	C	T	48866491	3	4	228	1	0	0	0	0	1	0	0	0	707	536	19	1	46	1	ANP32D	12	48866491	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8886405	48866491	84985404	833	14939										
OR8S1	0	genome.wustl.edu	37	chr12	48919685	48919685	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctcctgtcacagaggaaaAccatttcagtagagggctgc	10	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	48919685	48919685	A	C	SNP	OR8S1	ENST00000310194	human	ensembl	69_37n	1	known	missense	c.271	p.T91P	0.191	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376	186	0	0	141	77	35	-	-	-	C	48919685	A	C	48919685	3	2	228	1	0	0	0	0	1	0	0	0	11319	43	2	5	273	5	OR8S1	12	48919685	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	53194	48919685	84932210	834	14940										
LALBA	0	genome.wustl.edu	37	chr12	48961753	48961753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagacactcacaacttctcaCaaagccactgttccagcttc	4	16	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	48961753	48961753	C	T	SNP	LALBA	ENST00000301046	human	ensembl	69_37n	-1	known	missense	c.416	p.C139Y	0.130	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Lactalbumin,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LALBA	HGNC	ENSG00000167531	27	0	0	15	11	42.31	-	-	-	T	48961753	C	T	48961753	3	4	228	1	0	0	0	0	1	0	0	0	8658	478	17	4	16	4	LALBA	12	48961753	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	42068	48961753	84890142	835	14941										
CCNT1	0	genome.wustl.edu	37	chr12	49086970	49086970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attcaaatgcagtgggctgaGtgggctgaacaccctgggca	14	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	49086970	49086970	G	A	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.2027	p.T676I	0.994	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	83	0	0	67	42	38.53	-	-	-	A	49086970	G	A	49086970	3	1	228	1	0	0	0	0	1	0	0	0	2963	1029	36	4	157	4	CCNT1	12	49086970	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	125217	49086970	84764925	836	14942										
SPATS2	0	genome.wustl.edu	37	chr12	49919801	49919801	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccaatgaccccatgaaccaAgggcggcatgacagtatggg	12	11	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	49919801	49919801	A	G	SNP	SPATS2	ENST00000321898	human	ensembl	69_37n	1	known	silent	c.1401	p.Q467	1.000	NULL	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2	HGNC	ENSG00000123352	121	0	0	83	37	30.33	-	-	-	G	49919801	A	G	49919801	2	3	228	1	0	0	0	0	0	0	0	1	15110	69	3	5		5	SPATS2	12	49919801	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	832831	49919801	83932094	837	14943										
TFCP2	0	genome.wustl.edu	37	chr12	51492623	51492623	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatctggctgatctggcaaGgggaaatgctgaaaagctga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	51492623	51492623	G	-	DEL	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	frame_shift_del	c.1355	p.P452fs	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	97	0	0	64	56	45.9	-	-	-	-	51492623	G	-	51492623	7	5	228	1	0	1	0	1	0	0	0	0	15890	1000	35	0	165	0	TFCP2	12	51492623	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	1572822	51492623	82359272	838	14944										
ANKRD33	0	genome.wustl.edu	37	chr12	52284860	52284860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgtcccctaccagagccctcAgggcatattgagcaagtgcc	10	15	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	52284860	52284860	A	G	SNP	ANKRD33	ENST00000301190	human	ensembl	69_37n	1	novel	missense	c.1130	p.Q377R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33	HGNC	ENSG00000167612	40	0	0	43	30	41.1	-	-	-	G	52284860	A	G	52284860	3	3	228	1	0	0	0	0	1	0	0	0	660	188	7	5	1178	5	ANKRD33	12	52284860	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	792237	52284860	81567035	839	14945										
MAP3K12	0	genome.wustl.edu	37	chr12	53875788	53875788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggttcagggccagggatgacCtctgaaggaggtgggtccag	18	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	53875788	53875788	C	A	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	missense	c.2418	p.E806D	0.979	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	116	0	0	77	41	34.17	-	-	-	A	53875788	C	A	53875788	3	1	228	1	0	0	0	0	1	0	0	0	9317	680	24	4	169	4	MAP3K12	12	53875788	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1590928	53875788	79976107	840	14946										
HOXC10	0	genome.wustl.edu	37	chr12	54382955	54382955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taatgttatttttaacagagGagataaaggcagaaaacacc	8	5	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	54382955	54382955	G	A	SNP	HOXC10	ENST00000303460	human	ensembl	69_37n	1	known	missense	c.754	p.E252K	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXC10	HGNC	ENSG00000180818	94	0	0	53	45	45.92	-	-	-	A	54382955	G	A	54382955	3	1	228	1	0	0	0	0	1	0	0	0	7360	1175	41	2	760	2	HOXC10	12	54382955	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	507167	54382955	79468940	841	14947										
HOXC6	0	genome.wustl.edu	37	chr12	54423471	54423471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagcggaccggaggcgcggcCgccagatctactcgcggtac	16	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	54423471	54423471	C	T	SNP	HOXC6	ENST00000243108	human	ensembl	69_37n	1	known	missense	c.433	p.R145C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXC6	HGNC	ENSG00000197757	91	0	0	52	49	48.51	-	-	-	T	54423471	C	T	54423471	3	4	228	1	0	0	0	0	1	0	0	0	7366	652	23	1	439	1	HOXC6	12	54423471	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	40516	54423471	79428424	842	14948										
GPR84	0	genome.wustl.edu	37	chr12	54756569	54756569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattgagccaggtgaggttgGcagcaagcatgtggaccacc	14	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	54756569	54756569	G	A	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.1067	p.A356V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	167	1	0.6	118	122	50.83	-	-	-	A	54756569	G	A	54756569	3	1	228	1	0	0	0	0	1	0	0	0	6764	1203	42	4	127	4	GPR84	12	54756569	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	333098	54756569	79095326	843	14949										
PPP1R1A	0	genome.wustl.edu	37	chr12	54971231	54971231	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgcgacattctctctccccTtttgagcagtaaaatggagc	8	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	54971231	54971231	T	C	SNP	PPP1R1A	ENST00000547431	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	466	1	0.21	322	221	40.7	-	-	-	C	54971231	T	C	54971231	1	2	228	0	1	0	0	0	0	0	0	0	12444	1624	56	5		5	PPP1R1A	12	54971231	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	214662	54971231	78880664	844	14950										
OR6C70	0	genome.wustl.edu	37	chr12	55863619	55863619	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtaacccccaagaatatgtAaaaaaacaactgagatatgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	55863619	55863619	A	-	DEL	OR6C70	ENST00000327335	human	ensembl	69_37n	-1	known	frame_shift_del	c.304	p.Y102fs	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954	185	0	0	85	56	39.44	-	-	-	-	55863619	A	-	55863619	7	5	228	1	0	1	0	1	0	0	0	0	11270	362	13	0	636	0	OR6C70	12	55863619	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	892388	55863619	77988276	845	14951										
ERBB3	0	genome.wustl.edu	37	chr12	56495502	56495502	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catggatgtggggtcagaccTcagtgcctctctgggcagca	14	11	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	56495502	56495502	T	C	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.3692	p.L1231P	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	162	0	0	105	83	44.15	-	-	-	C	56495502	T	C	56495502	3	2	228	1	0	0	0	0	1	0	0	0	5245	1551	54	5	3933	5	ERBB3	12	56495502	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	631883	56495502	77356393	846	14952										
ERBB3	0	genome.wustl.edu	37	chr12	56495557	56495557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccaccctgtacccatcatGcccactgcaggcacaactcc	5	20	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	56495557	56495557	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.3747	p.M1249I	0.288	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	184	0	0	119	78	39.59	-	-	-	A	56495557	G	A	56495557	3	1	228	1	0	0	0	0	1	0	0	0	5245	1319	46	4	3988	4	ERBB3	12	56495557	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	55	56495557	77356338	847	14953										
PAN2	0	genome.wustl.edu	37	chr12	56720525	56720525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagaggaggcagtgagtccaCgagacacggcaaagcaaact	13	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	56720525	56720525	C	T	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	missense	c.1138	p.V380M	0.998	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	124	0	0	89	63	41.45	-	-	-	T	56720525	C	T	56720525	3	4	228	1	0	0	0	0	1	0	0	0	11487	536	19	1	2550	1	PAN2	12	56720525	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	224968	56720525	77131370	848	14954										
IL23A	0	genome.wustl.edu	37	chr12	56733796	56733798	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccagccatggcagcgtctcCttctccgcttcaaaatcctt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	56733796	56733798	CTT	-	DEL	IL23A	ENST00000228534	human	ensembl	69_37n	1	known	in_frame_del	c.478_480	p.L161in_frame_del	0.991:0.995:0.991	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core	-	no_errors	IL23A	HGNC	ENSG00000110944	109	0	0	131	51	28.02	-	-	-	-	56733798	CTT	-	56733796	7	5	228	1	0	1	0	1	0	0	0	0	7729	681	24	0	492	0	IL23A	12	56733796	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	13271	56733796	77118099	849	14955										
PRIM1	0	genome.wustl.edu	37	chr12	57140790	57140790	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctgagcctggaaagctccCagcttcactgtattgtgttg	10	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	57140790	57140790	C	A	SNP	PRIM1	ENST00000338193	human	ensembl	69_37n	-1	known	silent	c.288	p.L96	0.999	tigrfam_DNA_primase_ssu_euk/arc	pfam_DNA_primase_S,tigrfam_DNA_primase_ssu_euk/arc	-	no_errors	PRIM1	HGNC	ENSG00000198056	32	0	0	31	5	13.51	-	-	-	A	57140790	C	A	57140790	2	1	228	1	0	0	0	0	0	0	0	1	12571	581	21	4		4	PRIM1	12	57140790	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	406994	57140790	76711105	850	14956										
LRP1	0	genome.wustl.edu	37	chr12	57560770	57560770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggccgctgcatccccatctCctggacgtgtgatctggatg	12	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	57560770	57560770	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.2855	p.S952F	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	49	0	0	37	29	43.94	-	-	-	T	57560770	C	T	57560770	3	4	228	1	0	0	0	0	1	0	0	0	9017	855	30	2	2925	2	LRP1	12	57560770	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	419980	57560770	76291125	851	14957										
CTDSP2	0	genome.wustl.edu	37	chr12	58217397	58217397	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggcaggctaaggggcccgCagctgcccaaggctggtgta	17	11	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	58217397	58217397	C	T	SNP	CTDSP2	ENST00000398073	human	ensembl	69_37n	-1	known	silent	c.804	p.L268	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP2	HGNC	ENSG00000175215	25	0	0	17	7	29.17	-	-	-	T	58217397	C	T	58217397	2	4	228	1	0	0	0	0	0	0	0	1	4036	697	25	4		4	CTDSP2	12	58217397	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	656627	58217397	75634498	852	14958										
TMBIM4	0	genome.wustl.edu	37	chr12	66531837	66531837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagctaatacgtactcttcaGgtgacagtttatgcatcagt	8	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	66531837	66531837	G	T	SNP	TMBIM4	ENST00000358230	human	ensembl	69_37n	-1	known	missense	c.620	p.P207H	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957	189	0	0	81	64	44.14	-	-	-	T	66531837	G	T	66531837	3	4	228	1	0	0	0	0	1	0	0	0	16077	1000	35	4	100	4	TMBIM4	12	66531837	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8314440	66531837	67320058	853	14959										
DYRK2	0	genome.wustl.edu	37	chr12	68052279	68052279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaccccaggccaggctttgcGgcacccctggctgaggaggc	15	15	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	68052279	68052279	G	A	SNP	DYRK2	ENST00000344096	human	ensembl	69_37n	1	known	missense	c.1592	p.R531Q	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334	324	0	0	190	147	43.49	-	-	-	A	68052279	G	A	68052279	3	1	228	1	0	0	0	0	1	0	0	0	4891	1116	39	1	1602	1	DYRK2	12	68052279	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1520442	68052279	65799616	854	14960										
CCT2	0	genome.wustl.edu	37	chr12	69991010	69991010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcaaacttatcgaggaagtcAtgattggagaagacaaactc	10	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	69991010	69991010	A	G	SNP	CCT2	ENST00000299300	human	ensembl	69_37n	1	known	missense	c.1057	p.M353V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	274	1	0.36	141	112	44.27	-	-	-	G	69991010	A	G	69991010	3	3	228	1	0	0	0	0	1	0	0	0	2982	217	8	5	1099	5	CCT2	12	69991010	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1938731	69991010	63860885	855	14961										
CCT2	0	genome.wustl.edu	37	chr12	69991456	69991456	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttgcgtggtgccactcaaCaaattttagatgaagcagaa	9	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	69991456	69991456	C	T	SNP	CCT2	ENST00000299300	human	ensembl	69_37n	1	known	nonsense	c.1141	p.Q381*	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	137	0	0	67	53	44.17	-	-	-	T	69991456	C	T	69991456	4	4	228	1	0	0	0	0	0	1	0	0	2982	479	17	4	1187	4	CCT2	12	69991456	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	446	69991456	63860439	856	14962										
BEST3	0	genome.wustl.edu	37	chr12	70049283	70049283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctggctggtctccctgatggTggacagctctcccatgctga	12	13	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	70049283	70049283	T	C	SNP	BEST3	ENST00000330891	human	ensembl	69_37n	-1	known	missense	c.1411	p.T471A	0.187	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	188	0	0	137	91	39.91	-	-	-	C	70049283	T	C	70049283	3	2	228	1	0	0	0	0	1	0	0	0	1410	1696	59	5	599	5	BEST3	12	70049283	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	57827	70049283	63802612	857	14963										
ZFC3H1	0	genome.wustl.edu	37	chr12	72013168	72013170	+	In_Frame_Del	DEL	GAA	GAA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aataaatttccgcaaaaatgGaagaagattatcgcctcgat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	72013168	72013170	GAA	-	DEL	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	in_frame_del	c.5071_5069	p.L1690in_frame_del	1.000:1.000:1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	97	0	0	70	42	37.17	-	-	-	-	72013170	GAA	-	72013168	7	5	228	1	0	1	0	1	0	0	0	0	17729	1174	41	0	934	0	ZFC3H1	12	72013168	In_Frame_Del	DEL	GAA	TCGA-A8-A09Z-01A-11W-A019-09	1963885	72013168	61838727	858	14964										
TRHDE	0	genome.wustl.edu	37	chr12	72956006	72956006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgatctctggaatacattatCggaggtaaagtataggaagc	11	5	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	72956006	72956006	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.1715	p.S572L	0.997	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	87	0	0	39	22	36.07	-	-	-	T	72956006	C	T	72956006	3	4	228	1	0	0	0	0	1	0	0	0	16575	893	31	1	1745	1	TRHDE	12	72956006	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	942838	72956006	60895889	859	14965										
TSPAN19	0	genome.wustl.edu	37	chr12	85413517	85413517	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catgccatagttgctgaaccTgtagaaaattgtattaaaaa	7	6	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	85413517	85413517	T	G	SNP	TSPAN19	ENST00000532498	human	ensembl	69_37n	-1	known	splice_site	c.340-2	e5-2	1.000	-	-	-	no_errors	TSPAN19	HGNC	ENSG00000231738	108	0	0	54	42	43.75	-	-	-	G	85413517	T	G	85413517	5	3	228	1	0	0	0	0	0	0	1	0	16739	1594	55	5	424	5	TSPAN19	12	85413517	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	12457511	85413517	48438378	860	14966										
ATP2B1	0	genome.wustl.edu	37	chr12	90004976	90004976	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taataaatctttacctctccTttttcatttcgtattcttct							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	90004976	90004976	T	-	DEL	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	frame_shift_del	c.2241	p.G748fs	0.996	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	556	0	0	302	175	36.01	-	-	-	-	90004976	T	-	90004976	7	5	228	1	0	1	0	1	0	0	0	0	1143	1606	56	0	1615	0	ATP2B1	12	90004976	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	4591459	90004976	43846919	861	14967										
EPYC	0	genome.wustl.edu	37	chr12	91371911	91371911	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgtgaattcaggctcctgGggagaagagccatcaatcag	12	10	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	91371911	91371911	G	T	SNP	EPYC	ENST00000261172	human	ensembl	69_37n	-1	known	silent	c.294	p.P98	0.795	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	236	0	0	117	101	46.12	-	-	-	T	91371911	G	T	91371911	2	4	228	1	0	0	0	0	0	0	0	1	5238	1219	43	4		4	EPYC	12	91371911	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1366935	91371911	42479984	862	14968										
VEZT	0	genome.wustl.edu	37	chr12	95693924	95693924	+	RNA	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gttattttttttcttttttcTttttttttatttgaagccgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	95693924	95693924	T	-	DEL	VEZT	ENST00000356859	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	VEZT	HGNC	ENSG00000028203	15	0	0	3	5	62.5	-	-	-	-	95693924	T	-	95693924	6	5	228	0	1	1	0	1	0	0	0	0	17253	1624	56	0		0	VEZT	12	95693924	RNA	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	4322013	95693924	38157971	863	14969										
ANKS1B	0	genome.wustl.edu	37	chr12	99194847	99194847	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtactgtaccggggtagaGgctgtggcttcattcggagg	16	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	99194847	99194847	G	C	SNP	ANKS1B	ENST00000550778	human	ensembl	69_37n	-1	novel	missense	c.938	p.P313R	0.998	NULL	pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_SAM/pointed,smart_SAM,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKS1B	HGNC	ENSG00000185046	111	0	0	48	41	46.07	-	-	-	C	99194847	G	C	99194847	3	2	228	1	0	0	0	0	1	0	0	0	688	987	35	4	766	4	ANKS1B	12	99194847	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3500923	99194847	34657048	864	14970										
ANO4	0	genome.wustl.edu	37	chr12	101295566	101295566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcagaaggtcaataaaaatGgaggcaagctcttctggaat	12	6	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	101295566	101295566	G	A	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	190	0	0	182	110	37.67	-	-	-	A	101295566	G	A	101295566	3	1	228	1	0	0	0	0	1	0	0	0	698	1348	47	4	5	4	ANO4	12	101295566	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2100719	101295566	32556329	865	14971										
SSH1	0	genome.wustl.edu	37	chr12	109186303	109186303	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggggctgtctggccggcctgTgcacctctgcaggtggagca	17	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	109186303	109186303	T	C	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	missense	c.1652	p.H551R	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	117	0	0	28	45	61.64	-	-	-	C	109186303	T	C	109186303	3	2	228	1	0	0	0	0	1	0	0	0	15275	1696	59	5	1691	5	SSH1	12	109186303	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7890737	109186303	24665592	866	14972										
LHX5	0	genome.wustl.edu	37	chr12	113907048	113907048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctgcttgttacacaccatGcaggtgaaacagttgaggtg	12	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	113907048	113907048	G	A	SNP	LHX5	ENST00000261731	human	ensembl	69_37n	-1	known	silent	c.276	p.C92	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX5	HGNC	ENSG00000089116	77	0	0	7	16	69.57	-	-	-	A	113907048	G	A	113907048	2	1	228	1	0	0	0	0	0	0	0	1	8829	1311	46	4		4	LHX5	12	113907048	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4720745	113907048	19944847	867	14973										
MED13L	0	genome.wustl.edu	37	chr12	116675500	116675500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctacgccatttgattcccGtgagttcagcctggaaaaag	9	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	116675500	116675500	G	A	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.83	p.T28M	1.000	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	143	1	0.69	36	54	60	-	-	-	A	116675500	G	A	116675500	3	1	228	1	0	0	0	0	1	0	0	0	9502	1145	40	1	6669	1	MED13L	12	116675500	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2768452	116675500	17176395	868	14974										
FBXO21	0	genome.wustl.edu	37	chr12	117624319	117624320	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atacacaccagttcatcctcINSaaaaaaaatctctggtcctt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	117624319	117624320	-	A	INS	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	frame_shift_ins	c.433_432	p.E144fs	1.000:1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	115	1	0.86	21	55	72.37	-	-	-	A	117624320	-	A	117624319	7	5	228	1	0	1	1	0	0	0	0	0	5779	835	29	0	1493	0	FBXO21	12	117624319	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	948819	117624319	16227576	869	14975										
NOS1	0	genome.wustl.edu	37	chr12	117749371	117749371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctccacgccgaggggcagaGgtttgtgtgacttgccgtcc	14	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	117749371	117749371	G	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.752	p.P251H	0.900	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	50	0	0	32	8	20	-	-	-	T	117749371	G	T	117749371	3	4	228	1	0	0	0	0	1	0	0	0	10613	1000	35	4	3660	4	NOS1	12	117749371	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	125052	117749371	16102524	870	14976										
HIP1R	0	genome.wustl.edu	37	chr12	123343487	123343487	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctggctcccaccgaccctgCcgaccgtaagtgggtcctgg	12	17	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	123343487	123343487	C	T	SNP	HIP1R	ENST00000253083	human	ensembl	69_37n	1	known	missense	c.2153	p.A718V	1.000	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1R	HGNC	ENSG00000130787	11	0	0	3	8	72.73	-	-	-	T	123343487	C	T	123343487	3	4	228	1	0	0	0	0	1	0	0	0	7166	739	26	4	2235	4	HIP1R	12	123343487	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5594116	123343487	10508408	871	14977										
SETD8	0	genome.wustl.edu	37	chr12	123892171	123892171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catcgcctcccgagacatcgCggctggggaggagctcctgt	14	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	123892171	123892171	C	T	SNP	SETD8	ENST00000330479	human	ensembl	69_37n	1	known	missense	c.980	p.A327V	0.885	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_errors	SETD8	HGNC	ENSG00000183955	55	0	0	8	19	70.37	-	-	-	T	123892171	C	T	123892171	3	4	228	1	0	0	0	0	1	0	0	0	14225	768	27	1	1010	1	SETD8	12	123892171	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	548684	123892171	9959724	872	14978										
TMEM132D	0	genome.wustl.edu	37	chr12	129559081	129559081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggtgaggtcgctggggatgGtctgcaagtggctgttgtca	18	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	129559081	129559081	G	T	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2639	p.T880N	0.167	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	197	0	0	100	72	41.86	-	-	-	T	129559081	G	T	129559081	3	4	228	1	0	0	0	0	1	0	0	0	16142	1261	44	4	664	4	TMEM132D	12	129559081	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5666910	129559081	4292814	873	14979										
STX2	0	genome.wustl.edu	37	chr12	131283160	131283160	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcattcataacatttctttcTatgttgttgatcatttcacc	4	9	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	131283160	131283160	T	C	SNP	STX2	ENST00000392373	human	ensembl	69_37n	-1	known	missense	c.696	p.I232M	1.000	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX2	HGNC	ENSG00000111450	170	0	0	85	70	45.16	-	-	-	C	131283160	T	C	131283160	3	2	228	1	0	0	0	0	1	0	0	0	15436	1512	53	5	260	5	STX2	12	131283160	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1724079	131283160	2568735	874	14980										
GOLGA3	0	genome.wustl.edu	37	chr12	133351866	133351866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatggacaggtcttcctggGccatctccaactcagacttg	9	13	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	133351866	133351866	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.4004	p.A1335V	0.160	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	75	0	0	46	21	31.34	-	-	-	A	133351866	G	A	133351866	3	1	228	1	0	0	0	0	1	0	0	0	6606	1203	42	4	504	4	GOLGA3	12	133351866	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2068706	133351866	500029	875	14981										
ZNF10	0	genome.wustl.edu	37	chr12	133733295	133733295	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatacacactggagagaaacCatatgaatgctgtcagtgtg	11	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	12	133733295	133733295	C	A	SNP	ZNF10	ENST00000248211	human	ensembl	69_37n	1	known	missense	c.1463	p.P488Q	0.973	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223	128	0	0	83	66	44.3	-	-	-	A	133733295	C	A	133733295	3	1	228	1	0	0	0	0	1	0	0	0	17808	594	21	4	1477	4	ZNF10	12	133733295	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	381429	133733295	118600	876	14982										
SPATA13	0	genome.wustl.edu	37	chr13	24860363	24860363	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctttcagctgatcagtgaTggcaacgtggtctgcgcaga	12	10	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	24860363	24860363	T	C	SNP	SPATA13	ENST00000382141	human	ensembl	69_37n	1	known	missense	c.2059	p.W687R	1.000	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA13	HGNC	ENSG00000182957	125	0	0	56	47	45.19	-	-	-	C	24860363	T	C	24860363	3	2	228	1	0	0	0	0	1	0	0	0	15091	1461	51	5	2331	5	SPATA13	13	24860363	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09		24860363	90309515	877	14983										
PARP4	0	genome.wustl.edu	37	chr13	25068831	25068831	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattcacttgcatcttcagaGgttttctttatagcaaactg	6	8	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	25068831	25068831	G	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	silent	c.621	p.T207	0.973	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	67	0	0	50	22	30.56	-	-	-	T	25068831	G	T	25068831	2	4	228	1	0	0	0	0	0	0	0	1	11536	987	35	4		4	PARP4	13	25068831	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	208468	25068831	90101047	878	14984										
CENPJ	0	genome.wustl.edu	37	chr13	25479533	25479533	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgagttcatttcccaagtgTgaatctgactttggttttgg	10	6	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	25479533	25479533	T	C	SNP	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	silent	c.2643	p.S881	0.916	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	349	0	0	163	92	36.08	-	-	-	C	25479533	T	C	25479533	2	2	228	1	0	0	0	0	0	0	0	1	3263	1683	59	5		5	CENPJ	13	25479533	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	410702	25479533	89690345	879	14985										
NUPL1	0	genome.wustl.edu	37	chr13	25895227	25895227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaattgaaaatagaaactgCtcaggtataccaacttatgg	7	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	25895227	25895227	C	T	SNP	NUPL1	ENST00000381736	human	ensembl	69_37n	1	known	missense	c.947	p.A316V	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	208	0	0	140	49	25.93	-	-	-	T	25895227	C	T	25895227	3	4	228	1	0	0	0	0	1	0	0	0	10847	797	28	4	981	4	NUPL1	13	25895227	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	415694	25895227	89274651	880	14986										
ATP8A2	0	genome.wustl.edu	37	chr13	26144957	26144957	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttctggccgtgtgccacaCggttgttcctgagaaggatg	13	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	26144957	26144957	C	T	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	missense	c.1526	p.T509M	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC	ENSG00000132932	101	0	0	88	45	33.83	-	-	-	T	26144957	C	T	26144957	3	4	228	1	0	0	0	0	1	0	0	0	1197	536	19	1	1592	1	ATP8A2	13	26144957	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	249730	26144957	89024921	881	14987										
WASF3	0	genome.wustl.edu	37	chr13	27216451	27216451	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagccccggcacttgtgccGgggagctctgcctgaaggga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	27216451	27216451	G	-	DEL	WASF3	ENST00000335327	human	ensembl	69_37n	1	known	frame_shift_del	c.44	p.G16fs	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970	117	0	0	132	86	39.09	-	-	-	-	27216451	G	-	27216451	7	5	228	1	0	1	0	1	0	0	0	0	17351	1116	39	0	46	0	WASF3	13	27216451	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	1071494	27216451	87953427	882	14988										
GSX1	0	genome.wustl.edu	37	chr13	28367973	28367973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggcgggagcgcaccgcaagGctgcaagtgcgcatcgctct	15	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	28367973	28367973	G	A	SNP	GSX1	ENST00000302945	human	ensembl	69_37n	1	known	missense	c.683	p.G228D	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840	33	0	0	26	23	46.94	-	-	-	A	28367973	G	A	28367973	3	1	228	1	0	0	0	0	1	0	0	0	6900	1203	42	4	689	4	GSX1	13	28367973	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1151522	28367973	86801905	883	14989										
POMP	0	genome.wustl.edu	37	chr13	29236555	29236555	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttgtgttgtagaatgccagAggacttggatctgagctaaa	12	5	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	29236555	29236555	A	T	SNP	POMP	ENST00000380842	human	ensembl	69_37n	1	known	missense	c.12	p.R4S	0.998	NULL	pfam_UMP1	-	no_errors	POMP	HGNC	ENSG00000132963	140	0	0	74	59	44.36	-	-	-	T	29236555	A	T	29236555	3	4	228	1	0	0	0	0	1	0	0	0	12318	301	11	5	18	5	POMP	13	29236555	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	868582	29236555	85933323	884	14990										
SPG20	0	genome.wustl.edu	37	chr13	36905608	36905608	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatcctctggtaactcagaGgacaggacgacccccacaaa	8	14	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	36905608	36905608	G	T	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	silent	c.936	p.S312	0.994	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	225	0	0	140	84	37.5	-	-	-	T	36905608	G	T	36905608	2	4	228	1	0	0	0	0	0	0	0	1	15133	987	35	4		4	SPG20	13	36905608	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7669053	36905608	78264270	885	14991										
LPAR6	0	genome.wustl.edu	37	chr13	48985686	48985686	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aattgtgtccgatgtaaagtAgtaaactatagggtcaaaac	9	5	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	48985686	48985686	A	T	SNP	LPAR6	ENST00000345941	human	ensembl	69_37n	-1	known	missense	c.874	p.Y292N	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y5_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	LPAR6	HGNC	ENSG00000139679	182	0	0	62	60	49.18	-	-	-	T	48985686	A	T	48985686	3	4	228	1	0	0	0	0	1	0	0	0	8975	420	15	5	164	5	LPAR6	13	48985686	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	12080078	48985686	66184192	886	14992										
FNDC3A	0	genome.wustl.edu	37	chr13	49580377	49580377	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actcagatcttaagtagtgaTatttctcttttgtctgcccc	6	10	4	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	49580377	49580377	T	C	SNP	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	silent	c.51	p.D17	0.997	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	269	1	0.37	138	106	43.44	-	-	-	C	49580377	T	C	49580377	2	2	228	1	0	0	0	0	0	0	0	1	6015	1403	49	5		5	FNDC3A	13	49580377	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	594691	49580377	65589501	887	14993										
FNDC3A	0	genome.wustl.edu	37	chr13	49765220	49765220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcctccctcccagattacagGgtagacccaaagcaaaagaa	8	13	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	49765220	49765220	G	T	SNP	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	missense	c.2014	p.G672C	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	174	0	0	104	55	34.59	-	-	-	T	49765220	G	T	49765220	3	4	228	1	0	0	0	0	1	0	0	0	6015	1232	43	4	2091	4	FNDC3A	13	49765220	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	184843	49765220	65404658	888	14994										
TDRD3	0	genome.wustl.edu	37	chr13	61103212	61103212	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtaccctgtgatgataaaaTattttacaatagtgggccca	8	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	61103212	61103212	T	A	SNP	TDRD3	ENST00000535286	human	ensembl	69_37n	1	known	missense	c.1853	p.I618K	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	127	0	0	64	26	28.89	-	-	-	A	61103212	T	A	61103212	3	1	228	1	0	0	0	0	1	0	0	0	15827	1406	49	5	1895	5	TDRD3	13	61103212	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	11337992	61103212	54066666	889	14995										
PIBF1	0	genome.wustl.edu	37	chr13	73491217	73491217	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actttaatattttccagttgAaaatgaagatgaggctgaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	73491217	73491217	A	-	DEL	PIBF1	ENST00000326291	human	ensembl	69_37n	1	known	frame_shift_del	c.1643	p.N549fs	1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535	160	0	0	88	52	36.88	-	-	-	-	73491217	A	-	73491217	7	5	228	1	0	1	0	1	0	0	0	0	11953	246	9	0	1689	0	PIBF1	13	73491217	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	12388005	73491217	41678661	890	14996										
MYCBP2	0	genome.wustl.edu	37	chr13	77655719	77655719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaaactgccaatcatggcaGgtcggcttgaagtttttatg	10	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	77655719	77655719	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.11261	p.P3754L	1.000	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	356	1	0.28	177	128	41.97	-	-	-	A	77655719	G	A	77655719	3	1	228	1	0	0	0	0	1	0	0	0	10090	1000	35	4	2851	4	MYCBP2	13	77655719	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4164502	77655719	37514159	891	14997										
UGGT2	0	genome.wustl.edu	37	chr13	96636086	96636086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcctttatttcttctctcAtatgttgatttacagcaatt	3	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	13	96636086	96636086	A	G	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.1064	p.M355T	0.998	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	55	0	0	17	12	41.38	-	-	-	G	96636086	A	G	96636086	3	3	228	1	0	0	0	0	1	0	0	0	17039	217	8	5	3606	5	UGGT2	13	96636086	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	18980367	96636086	18533792	892	14998										
OR4M1	0	genome.wustl.edu	37	chr14	20248568	20248568	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtccaactagtcctatttgtTatatttctatccttctattt	3	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	20248568	20248568	T	C	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	silent	c.87	p.V29	0.991	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	1084	0	0	819	195	19.23	-	-	-	C	20248568	T	C	20248568	2	2	228	1	0	0	0	0	0	0	0	1	11148	1741	61	5		5	OR4M1	14	20248568	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09		20248568	87100972	893	14999										
OR4K13	0	genome.wustl.edu	37	chr14	20502473	20502473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgcacaaatccaactgcatAggaggataacagtagcccag	10	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	20502473	20502473	A	G	SNP	OR4K13	ENST00000315693	human	ensembl	69_37n	-1	known	missense	c.445	p.Y149H	0.025	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K13	HGNC	ENSG00000176253	349	0	0	188	140	42.68	-	-	-	G	20502473	A	G	20502473	3	3	228	1	0	0	0	0	1	0	0	0	11141	420	15	5	471	5	OR4K13	14	20502473	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	253905	20502473	86847067	894	15000										
CCNB1IP1	0	genome.wustl.edu	37	chr14	20779538	20779538	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaacagtctgtaaagttagCtaaattatctttattttttt	5	4	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	20779538	20779538	C	T	SNP	CCNB1IP1	ENST00000556204	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.532	-	-	-	no_errors	CCNB1IP1	HGNC	ENSG00000100814	45	0	0	10	14	58.33	-	-	-	T	20779538	C	T	20779538	1	4	228	0	1	0	0	0	0	0	0	0	2941	812	28	4		4	CCNB1IP1	14	20779538	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	277065	20779538	86570002	895	15001										
TEP1	0	genome.wustl.edu	37	chr14	20852647	20852647	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agggccggccagctgccacaCccccccactcacaggggtat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	20852647	20852647	C	-	DEL	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	frame_shift_del	c.3242	p.G1081fs	0.998	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	229	0	0	184	104	35.74	-	-	-	-	20852647	C	-	20852647	7	5	228	1	0	1	0	1	0	0	0	0	15854	507	18	0	4773	0	TEP1	14	20852647	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	73109	20852647	86496893	896	15002										
TEP1	0	genome.wustl.edu	37	chr14	20871967	20871967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctggtactcgtcaaactggGcaaatttgtccgtcatggca	11	10	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	20871967	20871967	G	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.1109	p.A370V	0.997	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	216	0	0	155	89	36.48	-	-	-	A	20871967	G	A	20871967	3	1	228	1	0	0	0	0	1	0	0	0	15854	1203	42	4	6974	4	TEP1	14	20871967	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	19320	20871967	86477573	897	15003										
CHD8	0	genome.wustl.edu	37	chr14	21859175	21859176	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agttcaattctgccttattaINSttttttttacatctttgcca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	21859175	21859176	-	T	INS	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7113_7112	p.N2371fs	0.915:1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	42	0	0	18	8	30.77	-	-	-	T	21859176	-	T	21859175	7	5	228	1	0	1	1	0	0	0	0	0	3360	446	16	0	640	0	CHD8	14	21859175	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	987208	21859175	85490365	898	15004										
LRP10	0	genome.wustl.edu	37	chr14	23345905	23345906	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattccttctagcatctttgINScccccctctcccggatggag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	23345905	23345906	-	C	INS	LRP10	ENST00000359591	human	ensembl	69_37n	1	known	frame_shift_ins	c.1432_1433	p.L480fs	1.000:1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP10	HGNC	ENSG00000197324	82	0	0	61	36	37.11	-	-	-	C	23345906	-	C	23345905	7	5	228	1	0	1	1	0	0	0	0	0	9018	1319	46	0	1454	0	LRP10	14	23345905	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	1486730	23345905	84003635	899	15005										
CMTM5	0	genome.wustl.edu	37	chr14	23848547	23848547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttccatctttgcctatgatGccttcaagatctaccggact	6	12	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	23848547	23848547	G	A	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	1	known	missense	c.613	p.A205T	1.000	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	79	0	0	55	32	36.36	-	-	-	A	23848547	G	A	23848547	3	1	228	1	0	0	0	0	1	0	0	0	3616	1319	46	4	426	4	CMTM5	14	23848547	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	502642	23848547	83500993	900	15006										
MYH6	0	genome.wustl.edu	37	chr14	23868034	23868035	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctcgttgagaggatccttgINStttttttccagccagcccag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	23868034	23868035	-	T	INS	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1794_1793	p.N598fs	1.000:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	61	0	0	33	16	32.65	-	-	-	T	23868035	-	T	23868034	7	5	228	1	0	1	1	0	0	0	0	0	10110	1368	48	0	4125	0	MYH6	14	23868034	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	19487	23868034	83481506	901	15007										
MYH7	0	genome.wustl.edu	37	chr14	23887482	23887482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catacttggtcctccactggGccacctccgagttggccttg	10	15	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	23887482	23887482	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4106	p.A1369V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	79	0	0	59	35	37.23	-	-	-	A	23887482	G	A	23887482	3	1	228	1	0	0	0	0	1	0	0	0	10111	1203	42	4	1745	4	MYH7	14	23887482	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	19448	23887482	83462058	902	15008										
REC8	0	genome.wustl.edu	37	chr14	24646920	24646921	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggtgttgttgcagaggtgaINScccccccggaggagctgcgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	24646920	24646921	-	C	INS	REC8	ENST00000311457	human	ensembl	69_37n	1	known	frame_shift_ins	c.817_818	p.E276fs	0.997:0.480	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	22	0	0	13	7	35	-	-	-	C	24646921	-	C	24646920	7	5	228	1	0	1	1	0	0	0	0	0	13282	275	10	0	859	0	REC8	14	24646920	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	759438	24646920	82702620	903	15009										
IPO4	0	genome.wustl.edu	37	chr14	24651365	24651365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctctgccactgtgcagcccTgtttctgatgggggagaaca	12	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	24651365	24651365	T	C	SNP	IPO4	ENST00000354464	human	ensembl	69_37n	-1	known	missense	c.2603	p.Q868R	0.554	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497	42	0	0	27	23	45.1	-	-	-	C	24651365	T	C	24651365	3	2	228	1	0	0	0	0	1	0	0	0	7849	1580	55	5	662	5	IPO4	14	24651365	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4445	24651365	82698175	904	15010										
G2E3	0	genome.wustl.edu	37	chr14	31081486	31081486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taactaccttgagttaattgGatgtctcagacttataacga	7	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	31081486	31081486	G	A	SNP	G2E3	ENST00000206595	human	ensembl	69_37n	1	known	missense	c.1574	p.G525E	1.000	pfam_HECT,superfamily_HECT,smart_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140	221	0	0	141	82	36.77	-	-	-	A	31081486	G	A	31081486	3	1	228	1	0	0	0	0	1	0	0	0	6189	1174	41	2	1620	2	G2E3	14	31081486	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6430121	31081486	76268054	905	15011										
ARHGAP5	0	genome.wustl.edu	37	chr14	32560147	32560147	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggagtagaatgcaaaattcAtgtcattgaacaaacagagt	9	5	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	32560147	32560147	A	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.272	p.H91L	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	231	0	0	123	108	46.75	-	-	-	T	32560147	A	T	32560147	3	4	228	1	0	0	0	0	1	0	0	0	888	217	8	5	274	5	ARHGAP5	14	32560147	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1478661	32560147	74789393	906	15012										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562675	32562675	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaactgaggtctttactctgTtttttagtgatgttctagag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	32562675	32562675	T	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	frame_shift_del	c.2800	p.F935fs	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	274	0	0	147	76	33.63	-	-	-	-	32562675	T	-	32562675	7	5	228	1	0	1	0	1	0	0	0	0	888	1725	60	0	2802	0	ARHGAP5	14	32562675	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	2528	32562675	74786865	907	15013										
AKAP6	0	genome.wustl.edu	37	chr14	33201741	33201741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagctttgaagaaaggtggcGttttactaccaaatgatctc	9	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	33201741	33201741	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.3082	p.V1028I	1.000	smart_Spectrin/alpha-actinin	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	248	0	0	113	75	39.89	-	-	-	A	33201741	G	A	33201741	3	1	228	1	0	0	0	0	1	0	0	0	455	1145	40	1	3116	1	AKAP6	14	33201741	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	639066	33201741	74147799	908	15014										
EAPP	0	genome.wustl.edu	37	chr14	34998589	34998589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctctgtgcatcaacccaggCctgatctctgttatcttttt	6	12	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	34998589	34998589	C	T	SNP	EAPP	ENST00000250454	human	ensembl	69_37n	-1	known	missense	c.445	p.A149T	1.000	pfam_E2F-assoc_phosphoprotein	pfam_E2F-assoc_phosphoprotein	-	no_errors	EAPP	HGNC	ENSG00000129518	149	0	0	104	81	43.55	-	-	-	T	34998589	C	T	34998589	3	4	228	1	0	0	0	0	1	0	0	0	4912	739	26	4	424	4	EAPP	14	34998589	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1796848	34998589	72350951	909	15015										
FBXO33	0	genome.wustl.edu	37	chr14	39870683	39870683	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgaaagctggtgctctttcGtgacagggctttccaatgct	11	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	39870683	39870683	G	A	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	nonsense	c.1093	p.R365*	0.998	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	226	0	0	108	64	37.21	-	-	-	A	39870683	G	A	39870683	4	1	228	1	0	0	0	0	0	1	0	0	5789	1153	40	1	582	1	FBXO33	14	39870683	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4872094	39870683	67478857	910	15016										
L2HGDH	0	genome.wustl.edu	37	chr14	50732075	50732075	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccttatcccttttccttaCctaagtatatcactgatagt	3	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	50732075	50732075	C	T	SNP	L2HGDH	ENST00000267436	human	ensembl	69_37n	-1	known	splice_site	c.1196+1	e9+1	1.000	-	-	-	no_errors	L2HGDH	HGNC	ENSG00000087299	149	0	0	76	52	40.31	-	-	-	T	50732075	C	T	50732075	5	4	228	1	0	0	0	0	0	0	1	0	8644	521	18	4	202	4	L2HGDH	14	50732075	Splice_Site	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	10861392	50732075	56617465	911	15017										
FRMD6	0	genome.wustl.edu	37	chr14	52187002	52187002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactccagcagtgccatccaCcgcaagctgaaaacctgcag	8	15	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	52187002	52187002	C	T	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	silent	c.1254	p.H418	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	53	0	0	36	26	41.94	-	-	-	T	52187002	C	T	52187002	2	4	228	1	0	0	0	0	0	0	0	1	6103	506	18	4		4	FRMD6	14	52187002	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1454927	52187002	55162538	912	15018										
STYX	0	genome.wustl.edu	37	chr14	53237751	53237751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcatgcaataacttttagGcagtttgaagagaacacatg	8	7	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	53237751	53237751	G	A	SNP	STYX	ENST00000354586	human	ensembl	69_37n	1	known	missense	c.599	p.G200D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYX	HGNC	ENSG00000198252	143	0	0	78	44	36.07	-	-	-	A	53237751	G	A	53237751	3	1	228	1	0	0	0	0	1	0	0	0	15451	1217	42	4	641	4	STYX	14	53237751	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1050749	53237751	54111789	913	15019										
SYNE2	0	genome.wustl.edu	37	chr14	64469684	64469684	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgctgagcccgttacagacCtttcagcctcagatacacag	8	14	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	64469684	64469684	C	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.4033	p.L1345I	0.001	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	194	0	0	138	81	36.99	-	-	-	A	64469684	C	A	64469684	3	1	228	1	0	0	0	0	1	0	0	0	15538	681	24	4	4147	4	SYNE2	14	64469684	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	11231933	64469684	42879856	914	15020										
SYNE2	0	genome.wustl.edu	37	chr14	64488703	64488704	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagtgatttatttaataccINSaaaaaaagtgttttgcaaga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	64488703	64488704	-	A	INS	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	frame_shift_ins	c.5481_5482	p.S1829fs	0.993:1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	134	0	0	112	54	32.53	-	-	-	A	64488704	-	A	64488703	7	5	228	1	0	1	1	0	0	0	0	0	15538	581	21	0	5623	0	SYNE2	14	64488703	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	19019	64488703	42860837	915	15021										
GPHN	0	genome.wustl.edu	37	chr14	67647553	67647553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcagccgtctgatgagcatgCgcagtgccaatggattgttg	14	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	67647553	67647553	C	T	SNP	GPHN	ENST00000478722	human	ensembl	69_37n	1	known	missense	c.2209	p.R737C	1.000	pfam_MoeA_C_domain_IV,superfamily_MoeA_C_domain_IV	pfam_Mopterin-bd,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723	55	0	0	19	23	54.76	-	-	-	T	67647553	C	T	67647553	3	4	228	1	0	0	0	0	1	0	0	0	6660	768	27	1	2299	1	GPHN	14	67647553	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3158850	67647553	39701987	916	15022										
ERH	0	genome.wustl.edu	37	chr14	69847110	69847110	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtttccgattgaacaagatcCtcacatttcatctaatacag	5	10	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	69847110	69847110	C	T	SNP	ERH	ENST00000216520	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.921	-	-	-	no_errors	ERH	HGNC	ENSG00000100632	118	0	0	81	46	36.22	-	-	-	T	69847110	C	T	69847110	1	4	228	0	1	0	0	0	0	0	0	0	5263	696	24	4		4	ERH	14	69847110	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2199557	69847110	37502430	917	15023										
SLC8A3	0	genome.wustl.edu	37	chr14	70527617	70527617	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagaaattctcttgcctttcGtattcctcctcatctactat	3	12	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	70527617	70527617	G	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	silent	c.1824	p.Y608	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	237	0	0	122	69	36.13	-	-	-	A	70527617	G	A	70527617	2	1	228	1	0	0	0	0	0	0	0	1	14797	1140	40	1		1	SLC8A3	14	70527617	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	680507	70527617	36821923	918	15024										
ADAM21	0	genome.wustl.edu	37	chr14	70925298	70925298	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attctgtttttgtggggaaaGaggttgcatcatgaatactt	11	4	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	70925298	70925298	G	T	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	missense	c.1082	p.R361I	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	266	0	0	119	75	38.66	-	-	-	T	70925298	G	T	70925298	3	4	228	1	0	0	0	0	1	0	0	0	243	942	33	2	1084	2	ADAM21	14	70925298	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	397681	70925298	36424242	919	15025										
SIPA1L1	0	genome.wustl.edu	37	chr14	72165841	72165841	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggcagaagtccatgcccgAagggtagttatgcgtttgtc	13	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	72165841	72165841	A	G	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.3518	p.E1173G	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	148	0	0	81	58	41.43	-	-	-	G	72165841	A	G	72165841	3	3	228	1	0	0	0	0	1	0	0	0	14418	246	9	5	3556	5	SIPA1L1	14	72165841	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1240543	72165841	35183699	920	15026										
RGS6	0	genome.wustl.edu	37	chr14	72976894	72976894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaacagcgagtaaaaagatGgggcttctctttcgatgaga	11	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	72976894	72976894	G	T	SNP	RGS6	ENST00000553525	human	ensembl	69_37n	1	known	missense	c.998	p.W333L	1.000	superfamily_Regulat_G_prot_signal_superfam,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS6	HGNC	ENSG00000182732	356	0	0	210	159	43.09	-	-	-	T	72976894	G	T	72976894	3	4	228	1	0	0	0	0	1	0	0	0	13393	1357	47	4	1048	4	RGS6	14	72976894	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	811053	72976894	34372646	921	15027										
PSEN1	0	genome.wustl.edu	37	chr14	73614682	73614682	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcccttttcagaacctcaAgaggctttgttttctgtgaa	7	9	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	73614682	73614682	A	G	SNP	PSEN1	ENST00000553447	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.194	-	-	-	no_errors	PSEN1	HGNC	ENSG00000080815	63	0	0	37	20	35.09	-	-	-	G	73614682	A	G	73614682	1	3	228	0	1	0	0	0	0	0	0	0	12730	87	3	5		5	PSEN1	14	73614682	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	637788	73614682	33734858	922	15028										
HEATR4	0	genome.wustl.edu	37	chr14	73962066	73962066	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagtattttgtgtgtcagcAagtccttttggcttagtgtt	11	5	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	73962066	73962066	A	G	SNP	HEATR4	ENST00000334988	human	ensembl	69_37n	-1	known	missense	c.2651	p.L884S	0.985	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	237	0	0	108	89	45.18	-	-	-	G	73962066	A	G	73962066	3	3	228	1	0	0	0	0	1	0	0	0	7081	131	5	5	441	5	HEATR4	14	73962066	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	347384	73962066	33387474	923	15029										
PTGR2	0	genome.wustl.edu	37	chr14	74346782	74346782	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgagaacagccacatcatcCtgtgtggtcaaatttctcag	8	10	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	74346782	74346782	C	A	SNP	PTGR2	ENST00000267568	human	ensembl	69_37n	1	known	missense	c.754	p.L252M	1.000	pfam_ADH_C	pfam_ADH_C,superfamily_GroES-like	-	no_errors	PTGR2	HGNC	ENSG00000140043	220	0	0	157	107	40.53	-	-	-	A	74346782	C	A	74346782	3	1	228	1	0	0	0	0	1	0	0	0	12835	680	24	4	776	4	PTGR2	14	74346782	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	384716	74346782	33002758	924	15030										
COQ6	0	genome.wustl.edu	37	chr14	74425732	74425732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgttggaatccagaatgtgaGctggaactatgaccagtctg	12	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	74425732	74425732	G	A	SNP	COQ6	ENST00000334571	human	ensembl	69_37n	1	known	missense	c.671	p.S224N	0.989	pfam_mOase_FAD-bd,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723	93	0	0	64	49	43.36	-	-	-	A	74425732	G	A	74425732	3	1	228	1	0	0	0	0	1	0	0	0	3779	971	34	4	693	4	COQ6	14	74425732	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	78950	74425732	32923808	925	15031										
YLPM1	0	genome.wustl.edu	37	chr14	75230947	75230947	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctccaccaccaccgtccgCcccccctggaaataagacaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	75230947	75230947	C	-	DEL	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	frame_shift_del	c.755	p.P254fs	0.006	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	70	0	0	47	26	34.21	-	-	-	-	75230947	C	-	75230947	7	5	228	1	0	1	0	1	0	0	0	0	17583	739	26	0	757	0	YLPM1	14	75230947	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	805215	75230947	32118593	926	15032										
RPS6KL1	0	genome.wustl.edu	37	chr14	75376272	75376272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtccaggagcaggttcccgGggtggaggtcccggcacagc	18	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	75376272	75376272	G	A	SNP	RPS6KL1	ENST00000358328	human	ensembl	69_37n	-1	known	missense	c.1244	p.P415L	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208	30	0	0	5	9	64.29	-	-	-	A	75376272	G	A	75376272	3	1	228	1	0	0	0	0	1	0	0	0	13745	1232	43	4	498	4	RPS6KL1	14	75376272	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	145325	75376272	31973268	927	15033										
ESRRB	0	genome.wustl.edu	37	chr14	76964794	76964794	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctggagatgctggaggccaAggtgtgatggccccgcacac	15	12	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	76964794	76964794	A	G	SNP	ESRRB	ENST00000380887	human	ensembl	69_37n	1	known	missense	c.1295	p.K432R	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715	23	0	0	16	11	40.74	-	-	-	G	76964794	A	G	76964794	3	3	228	1	0	0	0	0	1	0	0	0	5298	86	3	5	1317	5	ESRRB	14	76964794	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1588522	76964794	30384746	928	15034										
TMEM63C	0	genome.wustl.edu	37	chr14	77685865	77685865	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccttgtggtttactccttcCtccggaaagctgcgtgggac	11	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	77685865	77685865	C	A	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	missense	c.175	p.L59I	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	39	0	0	22	35	61.4	-	-	-	A	77685865	C	A	77685865	3	1	228	1	0	0	0	0	1	0	0	0	16287	681	24	4	181	4	TMEM63C	14	77685865	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	721071	77685865	29663675	929	15035										
TMED8	0	genome.wustl.edu	37	chr14	77808277	77808277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggcatgacctccccatagCgaccccgcaaggagctcctg	10	17	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	77808277	77808277	C	T	SNP	TMED8	ENST00000216468	human	ensembl	69_37n	-1	known	missense	c.815	p.R272H	1.000	superfamily_GOLD,pfscan_GOLD	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580	82	0	0	75	53	41.41	-	-	-	T	77808277	C	T	77808277	3	4	228	1	0	0	0	0	1	0	0	0	16106	768	27	1	165	1	TMED8	14	77808277	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	122412	77808277	29541263	930	15036										
TSHR	0	genome.wustl.edu	37	chr14	81610362	81610362	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caattctgaacaagcctctcAtcactgttagcaactccaaa	4	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	81610362	81610362	A	G	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.1960	p.I654V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	518	1	0.19	284	171	37.34	-	-	-	G	81610362	A	G	81610362	3	3	228	1	0	0	0	0	1	0	0	0	16718	217	8	5	2135	5	TSHR	14	81610362	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	3802085	81610362	25739178	931	15037										
STON2	0	genome.wustl.edu	37	chr14	81744963	81744963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtcatcaaaggtgacccagCtgggaaaacgagcagaggtc	13	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	81744963	81744963	C	T	SNP	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	missense	c.692	p.S231N	1.000	pfam_Stonin2_N,pirsf_Stonin	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	84	0	0	43	28	39.44	-	-	-	T	81744963	C	T	81744963	3	4	228	1	0	0	0	0	1	0	0	0	15409	797	28	4	2031	4	STON2	14	81744963	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	134601	81744963	25604577	932	15038										
EML5	0	genome.wustl.edu	37	chr14	89202900	89202900	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcgccaacacacactccttAcagacaaacctagtaaaaag	4	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	89202900	89202900	A	G	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.857	p.V286A	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	426	0	0	233	144	38.2	-	-	-	G	89202900	A	G	89202900	3	3	228	1	0	0	0	0	1	0	0	0	5137	391	14	5	5224	5	EML5	14	89202900	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	7457937	89202900	18146640	933	15039										
SMEK1	0	genome.wustl.edu	37	chr14	91927860	91927860	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggctggtgaggttagtcttCgttccactggacagggaaag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	91927860	91927860	C	-	DEL	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	frame_shift_del	c.2256	p.K753fs	0.999	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	334	0	0	173	126	40.65	-	-	-	-	91927860	C	-	91927860	7	5	228	1	0	1	0	1	0	0	0	0	14882	871	31	0	253	0	SMEK1	14	91927860	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	2724960	91927860	15421680	934	15040										
BTBD7	0	genome.wustl.edu	37	chr14	93708687	93708687	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttcctctgcttattgaatCttccctttccaaatctgtat	3	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	93708687	93708687	C	T	SNP	BTBD7	ENST00000334746	human	ensembl	69_37n	-1	known	missense	c.3331	p.D1111N	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114	123	0	0	73	47	39.17	-	-	-	T	93708687	C	T	93708687	3	4	228	1	0	0	0	0	1	0	0	0	1555	913	32	2	71	2	BTBD7	14	93708687	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1780827	93708687	13640853	935	15041										
TCL1B	0	genome.wustl.edu	37	chr14	96152838	96152838	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttctgtgcgtctaggggtgCcccctggccgtctgtggatc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	96152838	96152838	C	-	DEL	TCL1B	ENST00000340722	human	ensembl	69_37n	1	known	frame_shift_del	c.34	p.P13fs	0.000	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	-	no_errors	TCL1B	HGNC	ENSG00000213231	20	0	0	12	7	33.33	-	-	-	-	96152838	C	-	96152838	7	5	228	1	0	1	0	1	0	0	0	0	15800	739	26	0	36	0	TCL1B	14	96152838	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	2444151	96152838	11196702	936	15042										
PAPOLA	0	genome.wustl.edu	37	chr14	97003381	97003381	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aactttttgaagctccaaacTtctttcaaaagtacaagtat	4	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	97003381	97003381	T	A	SNP	PAPOLA	ENST00000216277	human	ensembl	69_37n	1	known	missense	c.1099	p.F367I	1.000	pfam_PolA_pol_RNA-bd_dom,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060	61	0	0	21	31	59.62	-	-	-	A	97003381	T	A	97003381	3	1	228	1	0	0	0	0	1	0	0	0	11502	1609	56	5	1145	5	PAPOLA	14	97003381	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	850543	97003381	10346159	937	15043										
CDC42BPB	0	genome.wustl.edu	37	chr14	103406001	103406001	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgggcccatgtgggccacGtggttgaagttggttgggtt	17	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	14	103406001	103406001	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	silent	c.4773	p.H1591	1.000	smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	14	0	0	18	15	45.45	-	-	-	A	103406001	G	A	103406001	2	1	228	1	0	0	0	0	0	0	0	1	3102	1136	40	1		1	CDC42BPB	14	103406001	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6402620	103406001	3943539	938	15044										
MKRN3	0	genome.wustl.edu	37	chr15	23811404	23811405	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactcaggaagtggcggaagINScccccccggctgcatcctcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	23811404	23811405	-	C	INS	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	frame_shift_ins	c.475_476	p.A162fs	0.960:0.962	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	41	0	0	35	16	31.37	-	-	-	C	23811405	-	C	23811404	7	5	228	1	0	1	1	0	0	0	0	0	9679	971	34	0	477	0	MKRN3	15	23811404	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09		23811404	78719988	939	15045										
HERC2	0	genome.wustl.edu	37	chr15	28451475	28451475	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagaggatcatggggggctGcggcccttcaggagacatgt	16	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	28451475	28451475	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	nonsense	c.7123	p.Q2375*	0.977	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	236	0	0	118	87	42.44	-	-	-	A	28451475	G	A	28451475	4	1	228	1	0	0	0	0	0	1	0	0	7109	1328	46	4	7577	4	HERC2	15	28451475	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4640071	28451475	74079917	940	15046										
TJP1	0	genome.wustl.edu	37	chr15	30010790	30010790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaatactgcttggactctgCaggcttgggccctgctgaag	12	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	30010790	30010790	C	T	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	missense	c.3556	p.A1186T	0.008	NULL	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	74	0	0	50	30	37.5	-	-	-	T	30010790	C	T	30010790	3	4	228	1	0	0	0	0	1	0	0	0	16024	710	25	4	1722	4	TJP1	15	30010790	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1559315	30010790	72520602	941	15047										
ZNF770	0	genome.wustl.edu	37	chr15	35273758	35273758	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttttagcacaaacactgcaTcggtacaggaagacatcatt	7	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	35273758	35273758	T	C	SNP	ZNF770	ENST00000356321	human	ensembl	69_37n	-1	known	silent	c.1878	p.R626	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146	153	0	0	100	48	32.43	-	-	-	C	35273758	T	C	35273758	2	2	228	1	0	0	0	0	0	0	0	1	18237	1422	50	5		5	ZNF770	15	35273758	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	5262968	35273758	67257634	942	15048										
INO80	0	genome.wustl.edu	37	chr15	41364252	41364252	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgcatcttcatcaaatgacCttgtctggaaagtaaaaaaa	6	7	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	41364252	41364252	C	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.1400	p.R467M	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	141	0	0	143	111	43.53	-	-	-	A	41364252	C	A	41364252	3	1	228	1	0	0	0	0	1	0	0	0	7800	681	24	4	3370	4	INO80	15	41364252	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6090494	41364252	61167140	943	15049										
RPAP1	0	genome.wustl.edu	37	chr15	41819479	41819479	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acgtagcgcagccgaggcagCaggctggtagccaggagccc	16	13	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	41819479	41819479	C	T	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	silent	c.1632	p.L544	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	54	0	0	31	30	49.18	-	-	-	T	41819479	C	T	41819479	2	4	228	1	0	0	0	0	0	0	0	1	13627	697	25	4		4	RPAP1	15	41819479	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	455227	41819479	60711913	944	15050										
JMJD7-PLA2G4B	0	genome.wustl.edu	37	chr15	42127256	42127256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggatcgcttcatgatgccaGctgagcgccgcctgcccctg	13	15	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	42127256	42127256	G	A	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	69_37n	1	known	missense	c.307	p.A103T	0.999	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_JmjC_dom,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970	24	0	0	12	15	55.56	-	-	-	A	42127256	G	A	42127256	3	1	228	1	0	0	0	0	1	0	0	0	8009	971	34	4	317	4	JMJD7-PLA2G4B	15	42127256	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	307777	42127256	60404136	945	15051										
VPS39	0	genome.wustl.edu	37	chr15	42454679	42454679	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgaagcagggacagatacaCctgtctcagagagacatgag	12	10	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	42454679	42454679	C	A	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	missense	c.2209	p.V737L	1.000	NULL	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	41	0	0	26	13	33.33	-	-	-	A	42454679	C	A	42454679	3	1	228	1	0	0	0	0	1	0	0	0	17306	521	18	4	467	4	VPS39	15	42454679	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	327423	42454679	60076713	946	15052										
GANC	0	genome.wustl.edu	37	chr15	42632945	42632945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttgatatggaagatgaataCatgctgggtgagcatttctg	12	4	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	42632945	42632945	C	T	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	silent	c.2145	p.Y715	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	134	0	0	77	56	41.79	-	-	-	T	42632945	C	T	42632945	2	4	228	1	0	0	0	0	0	0	0	1	6284	489	17	4		4	GANC	15	42632945	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	178266	42632945	59898447	947	15053										
TUBGCP4	0	genome.wustl.edu	37	chr15	43668402	43668402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cactgagttcattgaacagtAcacgggccatgtgcaacagc	10	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	43668402	43668402	A	G	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.185	p.Y62C	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	118	1	0.84	75	47	38.52	-	-	-	G	43668402	A	G	43668402	3	3	228	1	0	0	0	0	1	0	0	0	16865	391	14	5	191	5	TUBGCP4	15	43668402	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1035457	43668402	58862990	948	15054										
TP53BP1	0	genome.wustl.edu	37	chr15	43748849	43748849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atggtgttctttaatttccaTagcttcctcctgatctaaca	5	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	43748849	43748849	T	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.1957	p.M653V	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	223	0	0	161	122	43.11	-	-	-	C	43748849	T	C	43748849	3	2	228	1	0	0	0	0	1	0	0	0	16479	1406	49	5	4044	5	TP53BP1	15	43748849	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	80447	43748849	58782543	949	15055										
MAP1A	0	genome.wustl.edu	37	chr15	43817446	43817446	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatgtctgttccagagcccCatgcagccacagcgtcacct	8	17	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	43817446	43817446	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.3775	p.H1259N	0.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	116	0	0	81	79	49.38	-	-	-	A	43817446	C	A	43817446	3	1	228	1	0	0	0	0	1	0	0	0	9298	594	21	4	3777	4	MAP1A	15	43817446	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	68597	43817446	58713946	950	15056										
DUOX2	0	genome.wustl.edu	37	chr15	45399600	45399600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggggtcaatgttgataacagCgaccagcacgtcccgcaggg	14	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	45399600	45399600	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.1636	p.A546T	0.026	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	94	0	0	57	38	40	-	-	-	T	45399600	C	T	45399600	3	4	228	1	0	0	0	0	1	0	0	0	4836	768	27	1	3094	1	DUOX2	15	45399600	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1582154	45399600	57131792	951	15057										
DUOX1	0	genome.wustl.edu	37	chr15	45444530	45444530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcatcacagacaccacccgCgtgggaatcatcctgtcgcg	11	15	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	45444530	45444530	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	silent	c.3240	p.R1080	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	57	0	0	25	20	44.44	-	-	-	T	45444530	C	T	45444530	2	4	228	1	0	0	0	0	0	0	0	1	4835	755	27	1		1	DUOX1	15	45444530	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	44930	45444530	57086862	952	15058										
SEMA6D	0	genome.wustl.edu	37	chr15	48059295	48059296	+	Frame_Shift_Ins	INS	-	-	T													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcggtccaacatctggttagINSttttttttaatttttttgaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	48059295	48059296	-	T	INS	SEMA6D	ENST00000559064	human	ensembl	69_37n	1	putative	frame_shift_ins	c.163_164	p.L55fs	1.000:1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEMA6D	HGNC	ENSG00000137872	188	0	0	112	62	35.63	-	-	-	T	48059296	-	T	48059295	7	5	228	1	0	1	1	0	0	0	0	0	14130	1044	36	0		0	SEMA6D	15	48059295	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	2614765	48059295	54472097	953	15059										
FBN1	0	genome.wustl.edu	37	chr15	48719959	48719959	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacctctgtgaagcagtaccCttcccgattgtctggaaggg	11	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	48719959	48719959	C	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.7009	p.G2337W	1.000	superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	77	0	0	61	41	40.2	-	-	-	A	48719959	C	A	48719959	3	1	228	1	0	0	0	0	1	0	0	0	5748	681	24	4	1642	4	FBN1	15	48719959	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	660664	48719959	53811433	954	15060										
SECISBP2L	0	genome.wustl.edu	37	chr15	49308784	49308784	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgacagaggtctggtgttagTaatttgccgtgctttcattg	12	6	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	49308784	49308784	T	A	SNP	SECISBP2L	ENST00000559471	human	ensembl	69_37n	-1	known	missense	c.1534	p.T512S	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593	185	0	0	123	87	41.43	-	-	-	A	49308784	T	A	49308784	3	1	228	1	0	0	0	0	1	0	0	0	14095	1638	57	5	1803	5	SECISBP2L	15	49308784	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	588825	49308784	53222608	955	15061										
ATP8B4	0	genome.wustl.edu	37	chr15	50264962	50264963	+	Frame_Shift_Del	DEL	TG	TG	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtcccagtttataaaataacTgtgtcctagacgaattactt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	50264962	50264963	TG	-	DEL	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	frame_shift_del	c.1060_1059	p.H353fs	1.000:0.997	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	181	0	0	85	42	33.07	-	-	-	-	50264963	TG	-	50264962	7	5	228	1	0	1	0	1	0	0	0	0	1201	1580	55	0	2582	0	ATP8B4	15	50264962	Frame_Shift_Del	DEL	TG	TCGA-A8-A09Z-01A-11W-A019-09	956178	50264962	52266430	956	15062										
USP50	0	genome.wustl.edu	37	chr15	50831018	50831018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcgttgttccaggtcagtgCgtcttgttgaaaaaaacatt	9	7	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	50831018	50831018	C	T	SNP	USP50	ENST00000532404	human	ensembl	69_37n	-1	known	missense	c.691	p.A231T	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP50	HGNC	ENSG00000170236	116	0	0	77	45	36.89	-	-	-	T	50831018	C	T	50831018	3	4	228	1	0	0	0	0	1	0	0	0	17179	768	27	1	325	1	USP50	15	50831018	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	566056	50831018	51700374	957	15063										
MYO5C	0	genome.wustl.edu	37	chr15	52505393	52505393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtttcactaccaagaatgAggttctgaatgagcttggcc	11	8	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	52505393	52505393	A	G	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	missense	c.4133	p.L1378P	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	91	0	0	59	26	30.59	-	-	-	G	52505393	A	G	52505393	3	3	228	1	0	0	0	0	1	0	0	0	10152	304	11	5	1127	5	MYO5C	15	52505393	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1674375	52505393	50025999	958	15064										
NEDD4	0	genome.wustl.edu	37	chr15	56122768	56122768	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cactgttcaactgtaaatgaCtgtggtccatttgaacctat	7	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	56122768	56122768	C	A	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	missense	c.3801	p.Q1267H	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	330	0	0	207	159	43.44	-	-	-	A	56122768	C	A	56122768	3	1	228	1	0	0	0	0	1	0	0	0	10382	564	20	4	166	4	NEDD4	15	56122768	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3617375	56122768	46408624	959	15065										
TCF12	0	genome.wustl.edu	37	chr15	57574774	57574774	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgaaactaccaaccctatgGgtcatatgtaaacatcagcc	7	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	57574774	57574774	G	T	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.2110	p.G704C	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	272	0	0	156	137	46.76	-	-	-	T	57574774	G	T	57574774	3	4	228	1	0	0	0	0	1	0	0	0	15782	1232	43	4	2257	4	TCF12	15	57574774	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1452006	57574774	44956618	960	15066										
CGNL1	0	genome.wustl.edu	37	chr15	57836733	57836733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacaggtccagcaaagagggGctggttgtgcagatggaggc	17	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	57836733	57836733	G	A	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	silent	c.3438	p.G1146	0.932	pfam_Myosin_tail	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	14	0	0	9	10	52.63	-	-	-	A	57836733	G	A	57836733	2	1	228	1	0	0	0	0	0	0	0	1	3333	1190	42	4		4	CGNL1	15	57836733	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	261959	57836733	44694659	961	15067										
RNF111	0	genome.wustl.edu	37	chr15	59359165	59359165	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccaccaccatactccccaCccagctgtcccagtttctcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	59359165	59359165	C	-	DEL	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	frame_shift_del	c.1569	p.P524fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	374	0	0	282	164	35.96	-	-	-	-	59359165	C	-	59359165	7	5	228	1	0	1	0	1	0	0	0	0	13511	506	18	0	1587	0	RNF111	15	59359165	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	1522432	59359165	43172227	962	15068										
RNF111	0	genome.wustl.edu	37	chr15	59384805	59384808	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagaggaaaaatgtactatcTgtttgtctattttagaggaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	59384805	59384808	TGTT	-	DEL	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	frame_shift_del	c.2860_2863	p.S956fs	1.000:1.000:1.000:1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	114	0	0	60	30	33.33	-	-	-	-	59384808	TGTT	-	59384805	7	5	228	1	0	1	0	1	0	0	0	0	13511	1580	55	0	2855	0	RNF111	15	59384805	Frame_Shift_Del	DEL	TGTT	TCGA-A8-A09Z-01A-11W-A019-09	25640	59384805	43146587	963	15069										
GCNT3	0	genome.wustl.edu	37	chr15	59911270	59911270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgagagacacattacaccTaaccaacaagaagaaggatc	8	9	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	59911270	59911270	T	C	SNP	GCNT3	ENST00000396065	human	ensembl	69_37n	1	known	missense	c.833	p.L278P	0.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT3	HGNC	ENSG00000140297	279	0	0	221	203	47.76	-	-	-	C	59911270	T	C	59911270	3	2	228	1	0	0	0	0	1	0	0	0	6352	1522	53	5	835	5	GCNT3	15	59911270	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	526465	59911270	42620122	964	15070										
RPS27L	0	genome.wustl.edu	37	chr15	63448657	63448657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agaatttggactttgtactaGgcgtttctttttatgttttt	8	4	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	63448657	63448657	G	T	SNP	RPS27L	ENST00000330964	human	ensembl	69_37n	-1	known	missense	c.70	p.L24I	0.987	NULL	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom	-	no_errors	RPS27L	HGNC	ENSG00000185088	92	0	0	30	14	31.82	-	-	-	T	63448657	G	T	63448657	3	4	228	1	0	0	0	0	1	0	0	0	13726	991	35	4	196	4	RPS27L	15	63448657	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3537387	63448657	39082735	965	15071										
HERC1	0	genome.wustl.edu	37	chr15	63991054	63991057	+	Frame_Shift_Del	DEL	TCAA	TCAA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcacaaagcttacaacatttTcaatcaaagtgtgaactccc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TCAA	TCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	63991054	63991057	TCAA	-	DEL	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	frame_shift_del	c.4778_4775	p.I1592fs	1.000:1.000:1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	211	0	0	89	61	40.67	-	-	-	-	63991057	TCAA	-	63991054	7	5	228	1	0	1	0	1	0	0	0	0	7108	1783	62	0	10019	0	HERC1	15	63991054	Frame_Shift_Del	DEL	TCAA	TCGA-A8-A09Z-01A-11W-A019-09	542397	63991054	38540338	966	15072										
ITGA11	0	genome.wustl.edu	37	chr15	68617522	68617522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcatggggccatggtcagGgtcctccagggaatactcga	14	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	68617522	68617522	G	T	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.2269	p.P757T	0.053	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	64	0	0	48	44	47.83	-	-	-	T	68617522	G	T	68617522	3	4	228	1	0	0	0	0	1	0	0	0	7928	1232	43	4	1349	4	ITGA11	15	68617522	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4626468	68617522	33913870	967	15073										
GLCE	0	genome.wustl.edu	37	chr15	69553370	69553370	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcagtgaggaatggtattaGgaataggcttgtaatgtctg	13	3	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	69553370	69553370	G	T	SNP	GLCE	ENST00000559500	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GLCE	HGNC	ENSG00000138604	166	1	0.6	90	59	39.6	-	-	-	T	69553370	G	T	69553370	1	4	228	0	1	0	0	0	0	0	0	0	6484	1015	35	4		4	GLCE	15	69553370	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	935848	69553370	32978022	968	15074										
UACA	0	genome.wustl.edu	37	chr15	70961075	70961075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttctctttccatttctactaAtttttttgctttctcattca	1	10	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	70961075	70961075	A	T	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.1948	p.L650I	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	400	1	0.25	199	132	39.88	-	-	-	T	70961075	A	T	70961075	3	4	228	1	0	0	0	0	1	0	0	0	16921	98	4	5	2318	5	UACA	15	70961075	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1407705	70961075	31570317	969	15075										
MYO9A	0	genome.wustl.edu	37	chr15	72190019	72190019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actagattggcatggacttcCttttctttcaaagaacacgg	8	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	72190019	72190019	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.4825	p.G1609R	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	193	0	0	98	68	40.96	-	-	-	T	72190019	C	T	72190019	3	4	228	1	0	0	0	0	1	0	0	0	10156	690	24	4	2893	4	MYO9A	15	72190019	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1228944	72190019	30341373	970	15076										
MAN2C1	0	genome.wustl.edu	37	chr15	75656988	75656988	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggagcccattgcaggctacTtccacatagagagtgaggct	12	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	75656988	75656988	T	A	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	missense	c.441	p.E147D	1.000	NULL	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	14	0	0	2	8	80	-	-	-	A	75656988	T	A	75656988	3	1	228	1	0	0	0	0	1	0	0	0	9289	1606	56	5	2769	5	MAN2C1	15	75656988	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3466969	75656988	26874404	971	15077										
SIN3A	0	genome.wustl.edu	37	chr15	75702533	75702533	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgacaacaaatcttcctggTttttaaagagacgagcaacc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	75702533	75702533	T	-	DEL	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	frame_shift_del	c.1103	p.N368fs	1.000	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	173	0	0	101	52	33.99	-	-	-	-	75702533	T	-	75702533	7	5	228	1	0	1	0	1	0	0	0	0	14414	1725	60	0	2778	0	SIN3A	15	75702533	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	45545	75702533	26828859	972	15078										
PTPN9	0	genome.wustl.edu	37	chr15	75816619	75816619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgaggtttcagctttacaatGccttccttccttcgagtttc	7	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	75816619	75816619	G	A	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	silent	c.228	p.G76	0.999	superfamily_CRAL/TRIO_N_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	120	0	0	70	64	47.76	-	-	-	A	75816619	G	A	75816619	2	1	228	1	0	0	0	0	0	0	0	1	12877	1306	46	4		4	PTPN9	15	75816619	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	114086	75816619	26714773	973	15079										
C15orf27	0	genome.wustl.edu	37	chr15	76452460	76452460	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcgcattccagtttgctgGcgtgattcactggatcagcc	11	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	76452460	76452460	G	A	SNP	C15orf27	ENST00000561302	human	ensembl	69_37n	1	known	nonsense	c.252	p.W84*	0.143	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758	83	0	0	51	32	38.55	-	-	-	A	76452460	G	A	76452460	4	1	228	1	0	0	0	0	0	1	0	0	1800	1203	42	4	421	4	C15orf27	15	76452460	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	635841	76452460	26078932	974	15080										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84639309	84639309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctggcagccaaaggtcggcGcatccccctcagtgagatga	13	13	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	84639309	84639309	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.2564	p.R855H	0.001	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	369	0	0	201	149	42.45	-	-	-	A	84639309	G	A	84639309	3	1	228	1	0	0	0	0	1	0	0	0	276	1087	38	1	2638	1	ADAMTSL3	15	84639309	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8186849	84639309	17892083	975	15081										
FES	0	genome.wustl.edu	37	chr15	91437040	91437040	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcacctgaggcccttaactaCggtacctagtccctgtctac	8	15	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	91437040	91437040	C	T	SNP	FES	ENST00000328850	human	ensembl	69_37n	1	known	silent	c.2202	p.Y734	0.026	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	FES	HGNC	ENSG00000182511	25	0	0	15	11	42.31	-	-	-	T	91437040	C	T	91437040	2	4	228	1	0	0	0	0	0	0	0	1	5866	550	19	1		1	FES	15	91437040	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6797731	91437040	11094352	976	15082										
SLCO3A1	0	genome.wustl.edu	37	chr15	92669300	92669300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttccttccagggatgactgCgatcccgtgtgcttgtctgg	12	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	92669300	92669300	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	69_37n	1	known	missense	c.1184	p.A395V	0.999	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	117	0	0	71	57	44.53	-	-	-	T	92669300	C	T	92669300	3	4	228	1	0	0	0	0	1	0	0	0	14817	768	27	1	1206	1	SLCO3A1	15	92669300	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1232260	92669300	9862092	977	15083										
ST8SIA2	0	genome.wustl.edu	37	chr15	92977529	92977529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagctgttgttgacagaagtAatgaaagcatcaagcacaac	9	8	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	92977529	92977529	A	G	SNP	ST8SIA2	ENST00000268164	human	ensembl	69_37n	1	known	missense	c.214	p.N72D	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557	268	0	0	146	113	43.63	-	-	-	G	92977529	A	G	92977529	3	3	228	1	0	0	0	0	1	0	0	0	15323	362	13	5	224	5	ST8SIA2	15	92977529	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	308229	92977529	9553863	978	15084										
LRRK1	0	genome.wustl.edu	37	chr15	101606410	101606410	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agacctcatttgggtccccaGgtacgtttcccgaggtgagg	13	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	101606410	101606410	G	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.5768	p.R1923M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	114	0	0	46	34	42.5	-	-	-	T	101606410	G	T	101606410	3	4	228	1	0	0	0	0	1	0	0	0	9098	1014	35	4	5890	4	LRRK1	15	101606410	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	8628881	101606410	924982	979	15085										
OR4F15	0	genome.wustl.edu	37	chr15	102359003	102359003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtcactgtcaatagtggacTcatttctgtgggctcctttg	11	9	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	15	102359003	102359003	T	C	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	1	known	missense	c.614	p.L205P	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	663	0	0	386	245	38.83	-	-	-	C	102359003	T	C	102359003	3	2	228	1	0	0	0	0	1	0	0	0	11134	1551	54	5	616	5	OR4F15	15	102359003	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	752593	102359003	172389	980	15086										
MSLNL	0	genome.wustl.edu	37	chr16	830632	830632	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtgacagtgtgcacgtgtaGgtgacagtgtgcacaggtag	17	6	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	830632	830632	G	A	SNP	MSLNL	ENST00000293892	human	ensembl	69_37n	-1	known	silent	c.369	p.T123	0.000	NULL	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006	21	0	0	10	5	33.33	-	-	-	A	830632	G	A	830632	2	1	228	1	0	0	0	0	0	0	0	1	9954	987	35	4		4	MSLNL	16	830632	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		830632	89524121	981	15087										
GNG13	0	genome.wustl.edu	37	chr16	848773	848773	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggttgttcttcatcaggtcGgggttcaggaaggggtcctt	16	7	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	848773	848773	G	A	SNP	GNG13	ENST00000248150	human	ensembl	69_37n	-1	known	silent	c.150	p.P50	0.790	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,prints_Gprotein-gamma,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,prints_Gprotein-gamma,pfscan_G-protein_gamma-like_dom	-	no_errors	GNG13	HGNC	ENSG00000127588	17	0	0	15	8	34.78	-	-	-	A	848773	G	A	848773	2	1	228	1	0	0	0	0	0	0	0	1	6578	1103	39	1		1	GNG13	16	848773	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	18141	848773	89505980	982	15088										
ABCA3	0	genome.wustl.edu	37	chr16	2331209	2331209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacggccaggaggggcaccCgctgctcgtacacctgcagg	14	16	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	2331209	2331209	C	A	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.4178	p.R1393L	0.014	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	17	0	0	10	9	47.37	-	-	-	A	2331209	C	A	2331209	3	1	228	1	0	0	0	0	1	0	0	0	33	652	23	3	960	3	ABCA3	16	2331209	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1482436	2331209	88023544	983	15089										
AMDHD2	0	genome.wustl.edu	37	chr16	2578147	2578147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acctcttcaacgccatgctgCctgtgagtgctatggggccc	11	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	2578147	2578147	C	T	SNP	AMDHD2	ENST00000413459	human	ensembl	69_37n	1	known	missense	c.715	p.P239S	1.000	superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	10	0	0	8	5	38.46	-	-	-	T	2578147	C	T	2578147	3	4	228	1	0	0	0	0	1	0	0	0	568	739	26	4	737	4	AMDHD2	16	2578147	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	246938	2578147	87776606	984	15090										
PDPK1	0	genome.wustl.edu	37	chr16	2607944	2607944	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaagtttgggaaaatccttGgggaaggctctttttccacg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	2607944	2607944	G	-	DEL	PDPK1	ENST00000342085	human	ensembl	69_37n	1	known	frame_shift_del	c.265	p.E90fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PDPK1	HGNC	ENSG00000140992	133	0	0	120	16	11.59	-	-	-	-	2607944	G	-	2607944	7	5	228	1	0	1	0	1	0	0	0	0	11760	1348	47	0	271	0	PDPK1	16	2607944	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	29797	2607944	87746809	985	15091										
SRRM2	0	genome.wustl.edu	37	chr16	2819269	2819269	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcaagccccaagaagccaCcccctggcgagcggaggtga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	2819269	2819269	C	-	DEL	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	frame_shift_del	c.8005	p.P2670fs	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	130	0	0	77	55	41.04	-	-	-	-	2819269	C	-	2819269	7	5	228	1	0	1	0	1	0	0	0	0	15260	507	18	0	8047	0	SRRM2	16	2819269	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	211325	2819269	87535484	986	15092										
CREBBP	0	genome.wustl.edu	37	chr16	3795332	3795332	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatctgatgcatcttccggCcacactccttgcaatcaacg	6	14	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	3795332	3795332	C	T	SNP	CREBBP	ENST00000570939	human	ensembl	69_37n	-1	novel	nonsense	c.480	p.W160*	1.000	superfamily_Bromodomain,superfamily_Znf_FYVE_PHD	pfam_Bromodomain,pfam_Histone_H3-K56_AcTrfase_RTT109,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon	CREBBP	HGNC	ENSG00000005339	68	0	0	49	19	27.94	-	-	-	T	3795332	C	T	3795332	4	4	228	1	0	0	0	0	0	1	0	0	3891	739	26	4	3508	4	CREBBP	16	3795332	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	976063	3795332	86559421	987	15093										
GLYR1	0	genome.wustl.edu	37	chr16	4861199	4861199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcagctgccatgggagtcGgatggttgaccgcatcaccc	13	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	4861199	4861199	G	A	SNP	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	missense	c.1559	p.P520L	1.000	superfamily_6-PGluconate_DH_C-like	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	388	1	0.26	228	179	43.87	-	-	-	A	4861199	G	A	4861199	3	1	228	1	0	0	0	0	1	0	0	0	6535	1116	39	1	110	1	GLYR1	16	4861199	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1065867	4861199	85493554	988	15094										
UBN1	0	genome.wustl.edu	37	chr16	4924243	4924243	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagcctgataaaaaggtttCtgtcccatcaggacagattg	10	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	4924243	4924243	C	A	SNP	UBN1	ENST00000262376	human	ensembl	69_37n	1	known	missense	c.1832	p.S611Y	0.978	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900	390	0	0	201	152	43.06	-	-	-	A	4924243	C	A	4924243	3	1	228	1	0	0	0	0	1	0	0	0	16989	913	32	2	1886	2	UBN1	16	4924243	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	63044	4924243	85430510	989	15095										
DEXI	0	genome.wustl.edu	37	chr16	11035629	11035629	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtcagcatcgtaaaggccCgagccggggtcggagagcac	16	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	11035629	11035629	C	T	SNP	DEXI	ENST00000331808	human	ensembl	69_37n	-1	known	silent	c.234	p.S78	0.747	prints_Dexamethasone-induced	prints_Dexamethasone-induced	-	no_errors	DEXI	HGNC	ENSG00000182108	12	0	0	12	9	42.86	-	-	-	T	11035629	C	T	11035629	2	4	228	1	0	0	0	0	0	0	0	1	4487	639	23	1		1	DEXI	16	11035629	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6111386	11035629	79319124	990	15096										
TXNDC11	0	genome.wustl.edu	37	chr16	11773451	11773451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcgggcactggagagctggGactccacctgcacttgtgct	14	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	11773451	11773451	G	A	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.2558	p.S853F	0.002	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	92	0	0	52	22	29.73	-	-	-	A	11773451	G	A	11773451	3	1	228	1	0	0	0	0	1	0	0	0	16889	1174	41	2	403	2	TXNDC11	16	11773451	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	737822	11773451	78581302	991	15097										
SNX29	0	genome.wustl.edu	37	chr16	12450109	12450109	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccctcgtgtcccagatgagGcaggagctcatcgatctccg	12	14	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	12450109	12450109	G	A	SNP	SNX29	ENST00000306030	human	ensembl	69_37n	1	known	silent	c.717	p.R239	0.994	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471	38	0	0	25	20	44.44	-	-	-	A	12450109	G	A	12450109	2	1	228	1	0	0	0	0	0	0	0	1	14987	1194	42	4		4	SNX29	16	12450109	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	676658	12450109	77904644	992	15098										
MKL2	0	genome.wustl.edu	37	chr16	14340481	14340481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgtcatcatcagccattgTcaccagtaacccagaagtca	7	12	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	14340481	14340481	T	C	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.1331	p.V444A	0.996	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	166	0	0	127	71	35.86	-	-	-	C	14340481	T	C	14340481	3	2	228	1	0	0	0	0	1	0	0	0	9673	1667	58	5	1402	5	MKL2	16	14340481	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1890372	14340481	76014272	993	15099										
KIAA0430	0	genome.wustl.edu	37	chr16	15729901	15729901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaaagcaaaccctgaccctAcctgacacgtgattgtcctg	9	13	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	15729901	15729901	A	G	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.443	p.V148A	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	265	1	0.38	173	109	38.65	-	-	-	G	15729901	A	G	15729901	3	3	228	1	0	0	0	0	1	0	0	0	8229	391	14	5	4888	5	KIAA0430	16	15729901	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1389420	15729901	74624852	994	15100										
MYH11	0	genome.wustl.edu	37	chr16	15835428	15835428	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtatctcctccagctcctgCttcttggccgccagccgcac	8	18	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	15835428	15835428	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.2772	p.K924	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	156	0	0	155	126	44.84	-	-	-	T	15835428	C	T	15835428	2	4	228	1	0	0	0	0	0	0	0	1	10103	796	28	4		4	MYH11	16	15835428	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	105527	15835428	74519325	995	15101										
DCUN1D3	0	genome.wustl.edu	37	chr16	20871508	20871508	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actagtttccacagggcaatGgctatttcccgatgcagtga	10	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	20871508	20871508	G	T	SNP	DCUN1D3	ENST00000324344	human	ensembl	69_37n	-1	known	silent	c.615	p.A205	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D3	HGNC	ENSG00000188215	396	0	0	222	146	39.67	-	-	-	T	20871508	G	T	20871508	2	4	228	1	0	0	0	0	0	0	0	1	4346	1335	47	4		4	DCUN1D3	16	20871508	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5036080	20871508	69483245	996	15102										
UQCRC2	0	genome.wustl.edu	37	chr16	21982932	21982932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatctggtgcaaaggccaacTaccgtggaggtaagcatttc	11	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	21982932	21982932	T	C	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	missense	c.757	p.Y253H	0.995	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	110	0	0	34	39	53.42	-	-	-	C	21982932	T	C	21982932	3	2	228	1	0	0	0	0	1	0	0	0	17117	1522	53	5	791	5	UQCRC2	16	21982932	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1111424	21982932	68371821	997	15103										
EARS2	0	genome.wustl.edu	37	chr16	23536559	23536559	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caatccaacccgtgtccctgCctcacctgctgtccactgag	7	18	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	23536559	23536559	C	T	SNP	EARS2	ENST00000563232	human	ensembl	69_37n	-1	novel	silent	c.1494	p.R498	0.413	tigrfam_Glu-tRNA-synth_Ib_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Glu-tRNA-synth_Ib_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356	70	0	0	55	32	36.78	-	-	-	T	23536559	C	T	23536559	2	4	228	1	0	0	0	0	0	0	0	1	4913	754	26	4		4	EARS2	16	23536559	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1553627	23536559	66818194	998	15104										
IL4R	0	genome.wustl.edu	37	chr16	27367219	27367219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgcctgttgtgctatgtcaGcatcaccaagtgagtcctgg	11	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	27367219	27367219	G	A	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.761	p.S254N	0.376	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	114	0	0	84	52	38.24	-	-	-	A	27367219	G	A	27367219	3	1	228	1	0	0	0	0	1	0	0	0	7752	971	34	4	801	4	IL4R	16	27367219	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3830660	27367219	62987534	999	15105										
GTF3C1	0	genome.wustl.edu	37	chr16	27475972	27475972	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaggaggtgcctgcccctcGggggggctgtcctcactgga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	27475972	27475972	G	-	DEL	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	frame_shift_del	c.5541	p.E1848fs	0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	53	0	0	60	18	22.22	-	-	-	-	27475972	G	-	27475972	7	5	228	1	0	1	0	1	0	0	0	0	6923	1103	39	0	804	0	GTF3C1	16	27475972	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	108753	27475972	62878781	1000	15106										
EIF3C	0	genome.wustl.edu	37	chr16	28734796	28734796	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaaaatgtttgccaagggaActgagatcacccatgctgtt	9	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	28734796	28734796	A	T	SNP	EIF3C	ENST00000331666	human	ensembl	69_37n	1	known	missense	c.964	p.T322S	1.000	pfam_eIF3c_N	pfam_eIF3c_N,pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3C	HGNC	ENSG00000184110	694	0	0	521	308	37.15	-	-	-	T	28734796	A	T	28734796	3	4	228	1	0	0	0	0	1	0	0	0	5049	43	2	5	3823	5	EIF3C	16	28734796	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1258824	28734796	61619957	1001	15107										
CD19	0	genome.wustl.edu	37	chr16	28943362	28943362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcttcctcctcttcctcaCccccatggaagtcaggcccg	6	19	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	28943362	28943362	C	T	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	missense	c.41	p.T14I	0.004	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	218	0	0	232	129	35.54	-	-	-	T	28943362	C	T	28943362	3	4	228	1	0	0	0	0	1	0	0	0	3002	507	18	4	43	4	CD19	16	28943362	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	208566	28943362	61411391	1002	15108										
ZNF688	0	genome.wustl.edu	37	chr16	30581745	30581745	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccggttcctcttccttcctgTttgggacatctcctgggaaa	9	13	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30581745	30581745	T	C	SNP	ZNF688	ENST00000223459	human	ensembl	69_37n	-1	known	missense	c.323	p.N108S	0.004	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF688	HGNC	ENSG00000229809	50	0	0	20	18	47.37	-	-	-	C	30581745	T	C	30581745	3	2	228	1	0	0	0	0	1	0	0	0	18189	1725	60	5	511	5	ZNF688	16	30581745	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1638383	30581745	59773008	1003	15109										
ZNF689	0	genome.wustl.edu	37	chr16	30616138	30616138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctcgcagtccgggcacgggTagggcttctcgcccgtgtgg	17	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30616138	30616138	T	C	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	missense	c.950	p.Y317C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	15	0	0	25	12	31.58	-	-	-	C	30616138	T	C	30616138	3	2	228	1	0	0	0	0	1	0	0	0	18190	1638	57	5	556	5	ZNF689	16	30616138	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	34393	30616138	59738615	1004	15110										
ZNF689	0	genome.wustl.edu	37	chr16	30616236	30616236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caagtgtagggcttctctccCgtgtgtgtacgctggtggat	14	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30616236	30616236	C	T	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	silent	c.852	p.T284	0.003	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	24	0	0	25	20	44.44	-	-	-	T	30616236	C	T	30616236	2	4	228	1	0	0	0	0	0	0	0	1	18190	639	23	1		1	ZNF689	16	30616236	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	98	30616236	59738517	1005	15111										
SRCAP	0	genome.wustl.edu	37	chr16	30749510	30749510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcctgagggtccttcacctGcccgacctcctcggcgtcgc	11	19	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30749510	30749510	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.8149	p.A2717T	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	64	0	0	55	37	40.22	-	-	-	A	30749510	G	A	30749510	3	1	228	1	0	0	0	0	1	0	0	0	15226	1319	46	4	8275	4	SRCAP	16	30749510	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	133274	30749510	59605243	1006	15112										
FBXL19	0	genome.wustl.edu	37	chr16	30958079	30958079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagagccgtggtcggctgcaGggggtggcagaactgcgtct	19	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30958079	30958079	G	A	SNP	FBXL19	ENST00000566320	human	ensembl	69_37n	1	putative	missense	c.191	p.R64K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXL19	HGNC	ENSG00000099364	10	0	0	13	6	31.58	-	-	-	A	30958079	G	A	30958079	3	1	228	1	0	0	0	0	1	0	0	0	5761	991	35	4	1754	4	FBXL19	16	30958079	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	208569	30958079	59396674	1007	15113										
SETD1A	0	genome.wustl.edu	37	chr16	30976317	30976317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacctgccccccgagcccagCcggcccaccgaccaggacta	9	21	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	30976317	30976317	C	T	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	silent	c.1254	p.S418	0.935	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	73	0	0	91	45	32.61	-	-	-	T	30976317	C	T	30976317	2	4	228	1	0	0	0	0	0	0	0	1	14218	738	26	4		4	SETD1A	16	30976317	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	18238	30976317	59378436	1008	15114										
FUS	0	genome.wustl.edu	37	chr16	31193960	31193962	+	In_Frame_Del	DEL	TTC	TTC	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctatggccagagcagctaTtcttcttatggccagagcca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	31193960	31193962	TTC	-	DEL	FUS	ENST00000254108	human	ensembl	69_37n	1	known	in_frame_del	c.165_167	p.S57in_frame_del	0.930:0.935:0.983	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280	104	0	0	82	45	34.88	-	-	-	-	31193962	TTC	-	31193960	7	5	228	1	0	1	0	1	0	0	0	0	6149	1500	52	0	175	0	FUS	16	31193960	In_Frame_Del	DEL	TTC	TCGA-A8-A09Z-01A-11W-A019-09	217643	31193960	59160793	1009	15115										
ARMC5	0	genome.wustl.edu	37	chr16	31473913	31473913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caacctcccagcagcccctgGtgcgggctgtgtgcctccta	11	17	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	31473913	31473913	G	A	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	missense	c.1330	p.V444M	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	29	0	0	15	7	30.43	-	-	-	A	31473913	G	A	31473913	3	1	228	1	0	0	0	0	1	0	0	0	958	1261	44	4	1055	4	ARMC5	16	31473913	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	279953	31473913	58880840	1010	15116										
ZNF267	0	genome.wustl.edu	37	chr16	31927621	31927622	+	Frame_Shift_Del	DEL	GA	GA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acatcggagaagacatactgGagagagaccctacaaatgtg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	31927621	31927622	GA	-	DEL	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	frame_shift_del	c.2051_2052	p.R686fs	1.000:0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	215	0	0	104	83	44.39	-	-	-	-	31927622	GA	-	31927621	7	5	228	1	0	1	0	1	0	0	0	0	17902	1174	41	0	2065	0	ZNF267	16	31927621	Frame_Shift_Del	DEL	GA	TCGA-A8-A09Z-01A-11W-A019-09	453708	31927621	58427132	1011	15117										
ABCC11	0	genome.wustl.edu	37	chr16	48232087	48232087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgcatcttctggataagttGggcatatttcccctttttct	8	9	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	48232087	48232087	G	T	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.2182	p.Q728K	0.963	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	69	0	0	17	21	55.26	-	-	-	T	48232087	G	T	48232087	3	4	228	1	0	0	0	0	1	0	0	0	51	1357	47	4	2026	4	ABCC11	16	48232087	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	16304466	48232087	42122666	1012	15118										
SLC12A3	0	genome.wustl.edu	37	chr16	56914066	56914066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttgcgaggaccagctgtacCcactgatcggcttcttcggc	11	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	56914066	56914066	C	T	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	missense	c.1468	p.P490S	1.000	pfam_AA-permease_dom,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	12	0	0	1	5	83.33	-	-	-	T	56914066	C	T	56914066	3	4	228	1	0	0	0	0	1	0	0	0	14473	623	22	4	1514	4	SLC12A3	16	56914066	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	8681979	56914066	33440687	1013	15119										
GPR114	0	genome.wustl.edu	37	chr16	57608843	57608843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggaccctgcgcaggctgcGggagcgggcggatgcaccaa	18	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	57608843	57608843	G	A	SNP	GPR114	ENST00000340339	human	ensembl	69_37n	1	known	missense	c.1325	p.R442Q	0.701	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	14	0	0	4	10	71.43	-	-	-	A	57608843	G	A	57608843	3	1	228	1	0	0	0	0	1	0	0	0	6681	1116	39	1	1363	1	GPR114	16	57608843	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	694777	57608843	32745910	1014	15120										
PDPR	0	genome.wustl.edu	37	chr16	70190438	70190438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcagaatggagtgtataaaCgcctcaccatgttcatcctg	9	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	70190438	70190438	C	T	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.2296	p.R766C	1.000	pfam_GCV_T_C	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	125	0	0	27	93	77.5	-	-	-	T	70190438	C	T	70190438	3	4	228	1	0	0	0	0	1	0	0	0	11762	536	19	1	2362	1	PDPR	16	70190438	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	12581595	70190438	20164315	1015	15121										
RFWD3	0	genome.wustl.edu	37	chr16	74657947	74657947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctgtaggtcctggagcaacGagccactggcagcatcccac	11	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	74657947	74657947	G	A	SNP	RFWD3	ENST00000361070	human	ensembl	69_37n	-1	known	missense	c.2204	p.S735L	0.140	smart_WD40_repeat	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING	-	no_errors	RFWD3	HGNC	ENSG00000168411	58	0	0	12	27	69.23	-	-	-	A	74657947	G	A	74657947	3	1	228	1	0	0	0	0	1	0	0	0	13344	1059	37	1	124	1	RFWD3	16	74657947	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4467509	74657947	15696806	1016	15122										
ZFP1	0	genome.wustl.edu	37	chr16	75204022	75204022	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcctttatccagaactcacaGctcatcatacacatgagaac	4	13	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	75204022	75204022	G	A	SNP	ZFP1	ENST00000393430	human	ensembl	69_37n	1	known	silent	c.1014	p.Q338	0.048	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP1	HGNC	ENSG00000184517	136	0	0	19	52	73.24	-	-	-	A	75204022	G	A	75204022	2	1	228	1	0	0	0	0	0	0	0	1	17732	962	34	4		4	ZFP1	16	75204022	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	546075	75204022	15150731	1017	15123										
FBXO31	0	genome.wustl.edu	37	chr16	87369782	87369782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgtactgactggtgtagatgAacttcatcaggatgagctcc	11	9	2	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	87369782	87369782	A	G	SNP	FBXO31	ENST00000311635	human	ensembl	69_37n	-1	known	missense	c.821	p.F274S	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO31	HGNC	ENSG00000103264	36	0	0	3	14	82.35	-	-	-	G	87369782	A	G	87369782	3	3	228	1	0	0	0	0	1	0	0	0	5787	246	9	5	814	5	FBXO31	16	87369782	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	12165760	87369782	2984971	1018	15124										
GALNS	0	genome.wustl.edu	37	chr16	88902642	88902642	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggtgaggttggcttccccCgtcttcagattaataggaaa	12	8	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	88902642	88902642	C	T	SNP	GALNS	ENST00000268695	human	ensembl	69_37n	-1	known	silent	c.600	p.T200	0.004	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	GALNS	HGNC	ENSG00000141012	20	0	0	2	9	81.82	-	-	-	T	88902642	C	T	88902642	2	4	228	1	0	0	0	0	0	0	0	1	6256	639	23	1		1	GALNS	16	88902642	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1532860	88902642	1452111	1019	15125										
CDH15	0	genome.wustl.edu	37	chr16	89249940	89249940	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggccacagagccagcccttgCtctatgtttgaacagctaag	10	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	89249940	89249940	C	T	SNP	CDH15	ENST00000521087	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	CDH15	HGNC	ENSG00000129910	9	0	0	3	5	62.5	-	-	-	T	89249940	C	T	89249940	1	4	228	0	1	0	0	0	0	0	0	0	3129	812	28	4		4	CDH15	16	89249940	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	347298	89249940	1104813	1020	15126										
ANKRD11	0	genome.wustl.edu	37	chr16	89351987	89351987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgaggcctttttcgaactcGgagtccgtgttgttgccgtc	12	10	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	16	89351987	89351987	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	silent	c.963	p.S321	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	83	0	0	11	37	77.08	-	-	-	A	89351987	G	A	89351987	2	1	228	1	0	0	0	0	0	0	0	1	639	1103	39	1		1	ANKRD11	16	89351987	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	102047	89351987	1002766	1021	15127										
WDR81	0	genome.wustl.edu	37	chr17	1636972	1636972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtgggacccccatggtggGggctgccctcaggatgacgg	18	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	1636972	1636972	G	A	SNP	WDR81	ENST00000409644	human	ensembl	69_37n	1	known	silent	c.4641	p.G1547	0.014	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	10	0	0	8	10	55.56	-	-	-	A	1636972	G	A	1636972	2	1	228	1	0	0	0	0	0	0	0	1	17427	1219	43	4		4	WDR81	17	1636972	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		1636972	79558238	1022	15128										
TSR1	0	genome.wustl.edu	37	chr17	2234380	2234380	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atggagatgtccggaagctcTtaaggcctctgtatttctga	11	8	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	2234380	2234380	T	C	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1520	p.K507R	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	160	0	0	145	75	34.09	-	-	-	C	2234380	T	C	2234380	3	2	228	1	0	0	0	0	1	0	0	0	16760	1609	56	5	922	5	TSR1	17	2234380	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	597408	2234380	78960830	1023	15129										
KIAA0664	0	genome.wustl.edu	37	chr17	2605211	2605211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccagtgcctcccgcacctcCcaggtcgccgtcggtgaaga	11	18	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	2605211	2605211	C	T	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.502	p.G168R	1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	10	0	0	14	10	41.67	-	-	-	T	2605211	C	T	2605211	3	4	228	1	0	0	0	0	1	0	0	0	8241	632	22	4	3519	4	KIAA0664	17	2605211	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	370831	2605211	78589999	1024	15130										
OR3A1	0	genome.wustl.edu	37	chr17	3195086	3195086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaagcttggttgaacccagtCgcatatagttaaagatacct	8	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	3195086	3195086	C	T	SNP	OR3A1	ENST00000323404	human	ensembl	69_37n	-1	known	missense	c.791	p.R264Q	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090	244	0	0	166	113	40.21	-	-	-	T	3195086	C	T	3195086	3	4	228	1	0	0	0	0	1	0	0	0	11110	884	31	1	160	1	OR3A1	17	3195086	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	589875	3195086	78000124	1025	15131										
ASPA	0	genome.wustl.edu	37	chr17	3397706	3397706	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagagaaagttgattaccccCgggatgaaaatggagaaatt	11	5	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	3397706	3397706	C	G	SNP	ASPA	ENST00000263080	human	ensembl	69_37n	1	known	missense	c.697	p.R233G	0.971	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ASPA	HGNC	ENSG00000108381	444	0	0	327	169	34.07	-	-	-	G	3397706	C	G	3397706	3	3	228	1	0	0	0	0	1	0	0	0	1054	643	23	3	715	3	ASPA	17	3397706	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	202620	3397706	77797504	1026	15132										
TMEM95	0	genome.wustl.edu	37	chr17	7259742	7259742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctttgggaagccaagattctGctcctctccatcttcggagc	9	13	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	7259742	7259742	G	A	SNP	TMEM95	ENST00000389982	human	ensembl	69_37n	1	known	missense	c.433	p.A145T	0.997	NULL	NULL	-	no_errors	TMEM95	HGNC	ENSG00000182896	319	0	0	180	137	43.08	-	-	-	A	7259742	G	A	7259742	3	1	228	1	0	0	0	0	1	0	0	0	16318	1306	46	4	487	4	TMEM95	17	7259742	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3862036	7259742	73935468	1027	15133										
NLGN2	0	genome.wustl.edu	37	chr17	7315493	7315493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taggtccgctcacaaaaaaaCgtgacgaggcgacgctcaat	10	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	7315493	7315493	C	T	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.475	p.R159C	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	50	0	0	82	12	12.77	-	-	-	T	7315493	C	T	7315493	3	4	228	1	0	0	0	0	1	0	0	0	10534	536	19	1	481	1	NLGN2	17	7315493	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	55751	7315493	73879717	1028	15134										
ZBTB4	0	genome.wustl.edu	37	chr17	7366057	7366057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagctgtgggagcccccaccGtgggcctcttggtgcttccg	15	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	7366057	7366057	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	69_37n	-1	known	silent	c.2244	p.H748	0.847	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	33	0	0	32	14	30.43	-	-	-	A	7366057	G	A	7366057	2	1	228	1	0	0	0	0	0	0	0	1	17637	1136	40	1		1	ZBTB4	17	7366057	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	50564	7366057	73829153	1029	15135										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7463398	7463398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgacagaggtgatgtggcaaCcagctcttaggcgtgggaga	16	7	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	7463398	7463398	C	T	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	missense	c.658	p.P220S	0.999	superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	167	0	0	115	58	33.53	-	-	-	T	7463398	C	T	7463398	3	4	228	1	0	0	0	0	1	0	0	0	16399	507	18	4	692	4	TNFSF12-TNFSF13	17	7463398	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	97341	7463398	73731812	1030	15136										
PER1	0	genome.wustl.edu	37	chr17	8051087	8051087	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccatggtgacatactccccGttgcgggcacagaagcggat	12	12	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	8051087	8051087	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	silent	c.1293	p.N431	0.990	pfam_PAS_fold_3	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	22	0	0	24	14	36.84	-	-	-	A	8051087	G	A	8051087	2	1	228	1	0	0	0	0	0	0	0	1	11802	1136	40	1		1	PER1	17	8051087	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	587689	8051087	73144123	1031	15137										
DNAH9	0	genome.wustl.edu	37	chr17	11597257	11597257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgcccagaaaattccaaatGtagtgcaaaccaccaacaag	6	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	11597257	11597257	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.4687	p.V1563I	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	284	0	0	188	117	38.36	-	-	-	A	11597257	G	A	11597257	3	1	228	1	0	0	0	0	1	0	0	0	4643	1377	48	4	4769	4	DNAH9	17	11597257	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3546170	11597257	69597953	1032	15138										
DNAH9	0	genome.wustl.edu	37	chr17	11738005	11738006	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggaagtagagctgaagcagINSaaaaatgaagatgcagacaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	11738005	11738006	-	A	INS	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	frame_shift_ins	c.9297_9298	p.N3100fs	0.996:1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	94	0	0	66	37	35.92	-	-	-	A	11738006	-	A	11738005	7	5	228	1	0	1	1	0	0	0	0	0	4643	933	33	0	9491	0	DNAH9	17	11738005	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	140748	11738005	69457205	1033	15139										
ZNF286A	0	genome.wustl.edu	37	chr17	15620166	15620166	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attaaacatcaaagaactcaTactggagagaaaccttataa	5	7	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	15620166	15620166	T	C	SNP	ZNF286A	ENST00000413242	human	ensembl	69_37n	1	known	silent	c.1128	p.H376	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC005324.8-001	Clone_based_vega_gene	ENSG00000255104	67	0	0	53	46	46.46	-	-	-	C	15620166	T	C	15620166	2	2	228	1	0	0	0	0	0	0	0	1	17919	1403	49	5		5	ZNF286A	17	15620166	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3882161	15620166	65575044	1034	15140										
ZSWIM7	0	genome.wustl.edu	37	chr17	15897110	15897110	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaactgtaaaatgagaatggAaaaaaaaagttaatcatatt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	15897110	15897110	A	-	DEL	ZSWIM7	ENST00000475498	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941	70	0	0	48	26	35.14	-	-	-	-	15897110	A	-	15897110	6	5	228	0	1	1	0	1	0	0	0	0	18336	261	9	0		0	ZSWIM7	17	15897110	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	276944	15897110	65298100	1035	15141										
CCDC144A	0	genome.wustl.edu	37	chr17	16612707	16612707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaatgaaagaagaccaagagTttgatttgcaaatgacaaaa	8	4	0	6			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	16612707	16612707	T	C	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.1336	p.F446L	0.992	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	275	1	0.36	112	101	47.42	-	-	-	C	16612707	T	C	16612707	3	2	228	1	0	0	0	0	1	0	0	0	2802	1725	60	5	1354	5	CCDC144A	17	16612707	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	715597	16612707	64582503	1036	15142										
CCDC144A	0	genome.wustl.edu	37	chr17	16675969	16675969	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctcgtccttctcctccagCtctttgcacttgcttctttg	6	15	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	16675969	16675969	C	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	silent	c.4197	p.S1399	0.004	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	66	0	0	41	41	50	-	-	-	T	16675969	C	T	16675969	2	4	228	1	0	0	0	0	0	0	0	1	2802	796	28	4		4	CCDC144A	17	16675969	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	63262	16675969	64519241	1037	15143										
FAM83G	0	genome.wustl.edu	37	chr17	18882158	18882158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgtccgcgcggccgaccacGtgaagctgcaacagagggag	15	14	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	18882158	18882158	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	69_37n	-1	known	missense	c.821	p.T274M	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	8	0	0	5	5	50	-	-	-	A	18882158	G	A	18882158	3	1	228	1	0	0	0	0	1	0	0	0	5684	1145	40	1	1658	1	FAM83G	17	18882158	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2206189	18882158	62313052	1038	15144										
FOXN1	0	genome.wustl.edu	37	chr17	26864250	26864250	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagccaccacctcactgcttCccccctgggccctgtctgac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	26864250	26864250	C	-	DEL	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	frame_shift_del	c.1743	p.P583fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	64	0	0	45	31	40.26	-	-	-	-	26864250	C	-	26864250	7	5	228	1	0	1	0	1	0	0	0	0	6067	854	30	0	1773	0	FOXN1	17	26864250	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	7982092	26864250	54330960	1039	15145										
SPAG5	0	genome.wustl.edu	37	chr17	26925493	26925493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagctctcaccctgggcaaaCagcccagtcgagaagctgtc	11	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	26925493	26925493	C	T	SNP	SPAG5	ENST00000536674	human	ensembl	69_37n	-1	novel	missense	c.212	p.C71Y	0.009	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	SPAG5	HGNC	ENSG00000076382	20	0	0	14	13	48.15	-	-	-	T	26925493	C	T	26925493	3	4	228	1	0	0	0	0	1	0	0	0	15072	493	17	4		4	SPAG5	17	26925493	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	61243	26925493	54269717	1040	15146										
KIAA0100	0	genome.wustl.edu	37	chr17	26960090	26960090	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggggcccgcagagtgacactAtggtgatcatgggggttccc	16	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	26960090	26960090	A	G	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.3675	p.H1225	0.244	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	98	0	0	95	46	32.62	-	-	-	G	26960090	A	G	26960090	2	3	228	1	0	0	0	0	0	0	0	1	8206	446	16	5		5	KIAA0100	17	26960090	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	34597	26960090	54235120	1041	15147										
KIAA0100	0	genome.wustl.edu	37	chr17	26966333	26966333	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgaaaaagatcagactgacCtttttttcctttgctttaga	6	8	1	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	26966333	26966333	C	A	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	missense	c.1229	p.R410I	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	146	0	0	112	63	36	-	-	-	A	26966333	C	A	26966333	3	1	228	1	0	0	0	0	1	0	0	0	8206	695	24	4	5594	4	KIAA0100	17	26966333	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6243	26966333	54228877	1042	15148										
SUPT6H	0	genome.wustl.edu	37	chr17	27016455	27016455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taggaagatggcagtggatgCcctggaatacgatgaatcag	14	6	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	27016455	27016455	C	T	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.3218	p.A1073V	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	182	0	0	58	71	54.62	-	-	-	T	27016455	C	T	27016455	3	4	228	1	0	0	0	0	1	0	0	0	15491	739	26	4	3312	4	SUPT6H	17	27016455	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	50122	27016455	54178755	1043	15149										
FLOT2	0	genome.wustl.edu	37	chr17	27211314	27211314	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcgcagcggggctgcaacgTcataatctctagggaaatcc	11	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	27211314	27211314	T	C	SNP	FLOT2	ENST00000394908	human	ensembl	69_37n	-1	known	missense	c.151	p.T51A	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589	16	0	0	6	6	50	-	-	-	C	27211314	T	C	27211314	3	2	228	1	0	0	0	0	1	0	0	0	5983	1667	58	5	1171	5	FLOT2	17	27211314	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	194859	27211314	53983896	1044	15150										
BLMH	0	genome.wustl.edu	37	chr17	28599826	28599826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggctggttgttgtatagaGtttttctccctccaaccata	9	9	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	28599826	28599826	G	T	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	missense	c.893	p.T298N	1.000	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578	252	1	0.39	118	110	48.25	-	-	-	T	28599826	G	T	28599826	3	4	228	1	0	0	0	0	1	0	0	0	1451	1029	36	4	494	4	BLMH	17	28599826	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1388512	28599826	52595384	1045	15151										
TMIGD1	0	genome.wustl.edu	37	chr17	28652027	28652027	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taccacatcatttgagcctgGgggttggctttcacattgca	10	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	28652027	28652027	G	T	SNP	TMIGD1	ENST00000328886	human	ensembl	69_37n	-1	known	silent	c.447	p.P149	0.983	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TMIGD1	HGNC	ENSG00000182271	302	0	0	187	114	37.87	-	-	-	T	28652027	G	T	28652027	2	4	228	1	0	0	0	0	0	0	0	1	16325	1219	43	4		4	TMIGD1	17	28652027	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	52201	28652027	52543183	1046	15152										
ATAD5	0	genome.wustl.edu	37	chr17	29196663	29196663	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tactacataggcaagtcaccAagtaagtaaactattttcct	5	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	29196663	29196663	A	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	silent	c.3606	p.P1202	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	204	0	0	127	70	35.35	-	-	-	G	29196663	A	G	29196663	2	3	228	1	0	0	0	0	0	0	0	1	1080	144	5	5		5	ATAD5	17	29196663	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	544636	29196663	51998547	1047	15153										
EVI2B	0	genome.wustl.edu	37	chr17	29631507	29631507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagacagtccagagatggaGggagactagtagaatcattt	13	5	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	29631507	29631507	G	T	SNP	EVI2B	ENST00000544462	human	ensembl	69_37n	-1	known	missense	c.1166	p.P389H	0.057	NULL	NULL	-	no_errors	EVI2B	HGNC	ENSG00000185862	375	0	0	274	177	39.25	-	-	-	T	29631507	G	T	29631507	3	4	228	1	0	0	0	0	1	0	0	0	5325	1000	35	4	229	4	EVI2B	17	29631507	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	434844	29631507	51563703	1048	15154										
NF1	0	genome.wustl.edu	37	chr17	29654786	29654786	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccaacacaccaagattcgGccaaaagatgtccctgggac	8	15	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	29654786	29654786	G	A	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	silent	c.5538	p.R1846	0.963	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	223	0	0	128	90	41.28	-	-	-	A	29654786	G	A	29654786	2	1	228	1	0	0	0	0	0	0	0	1	10428	1190	42	4		4	NF1	17	29654786	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	23279	29654786	51540424	1049	15155										
LRRC37B	0	genome.wustl.edu	37	chr17	30348555	30348555	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagcggactccagaagaaagGctcccagaggtggttccgct	13	11	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	30348555	30348555	G	A	SNP	LRRC37B	ENST00000341671	human	ensembl	69_37n	1	known	silent	c.390	p.R130	0.014	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	174	0	0	133	97	42.17	-	-	-	A	30348555	G	A	30348555	2	1	228	1	0	0	0	0	0	0	0	1	9060	1194	42	4		4	LRRC37B	17	30348555	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	693769	30348555	50846655	1050	15156										
LIG3	0	genome.wustl.edu	37	chr17	33321330	33321330	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccgttgagtatgcaatgaaGaaatgtcccaatggcatgtt	10	7	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	33321330	33321330	G	A	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	silent	c.1491	p.K497	1.000	pfam_DNA_ligase_ATP-dep_cent,superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	143	0	0	119	71	37.37	-	-	-	A	33321330	G	A	33321330	2	1	228	1	0	0	0	0	0	0	0	1	8837	933	33	2		2	LIG3	17	33321330	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2972775	33321330	47873880	1051	15157										
LIG3	0	genome.wustl.edu	37	chr17	33325243	33325243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctcttgtccctcagaaagcTttggacttggctgacatgat	9	10	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	33325243	33325243	T	C	SNP	LIG3	ENST00000585370	human	ensembl	69_37n	1	known	missense	c.95	p.L32P	0.806	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LIG3	HGNC	ENSG00000005156	58	0	0	50	27	35.06	-	-	-	C	33325243	T	C	33325243	3	2	228	1	0	0	0	0	1	0	0	0	8837	1596	56	5	1963	5	LIG3	17	33325243	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3913	33325243	47869967	1052	15158										
GGNBP2	0	genome.wustl.edu	37	chr17	34913056	34913056	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggagcgtctcttttcccagcTtgtagagtctggaaatcctg	11	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	34913056	34913056	T	C	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	1	known	missense	c.308	p.L103P	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	90	0	0	53	61	53.51	-	-	-	C	34913056	T	C	34913056	3	2	228	1	0	0	0	0	1	0	0	0	6411	1609	56	5	318	5	GGNBP2	17	34913056	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1587813	34913056	46282154	1053	15159										
SYNRG	0	genome.wustl.edu	37	chr17	35914004	35914004	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagttcagagggtttttcacTtgtgtttgttgtttctgttg	11	4	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	35914004	35914004	T	C	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	silent	c.1821	p.Q607	0.995	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	219	0	0	106	87	45.08	-	-	-	C	35914004	T	C	35914004	2	2	228	1	0	0	0	0	0	0	0	1	15552	1606	56	5		5	SYNRG	17	35914004	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1000948	35914004	45281206	1054	15160										
TOP2A	0	genome.wustl.edu	37	chr17	38552591	38552591	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcatttctatggttattcGtggaatgactctttgaccac	7	8	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	38552591	38552591	G	A	SNP	TOP2A	ENST00000423485	human	ensembl	69_37n	-1	known	nonsense	c.3664	p.R1222*	0.075	NULL	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2A	HGNC	ENSG00000131747	102	0	0	73	51	41.13	-	-	-	A	38552591	G	A	38552591	4	1	228	1	0	0	0	0	0	1	0	0	16461	1153	40	1	963	1	TOP2A	17	38552591	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2638587	38552591	42642619	1055	15161										
KRT12	0	genome.wustl.edu	37	chr17	39023042	39023042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtaggaagctaatctatcatTaagattttgcatagtttctt	7	5	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	39023042	39023042	T	C	SNP	KRT12	ENST00000251643	human	ensembl	69_37n	-1	known	missense	c.397	p.N133D	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT12	HGNC	ENSG00000187242	422	0	0	236	161	40.45	-	-	-	C	39023042	T	C	39023042	3	2	228	1	0	0	0	0	1	0	0	0	8502	1754	61	5	1119	5	KRT12	17	39023042	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	470451	39023042	42172168	1056	15162										
KRT32	0	genome.wustl.edu	37	chr17	39620681	39620681	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cggtccccaagctggcatcgAagggaaccgacttcctgaaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	39620681	39620681	A	-	DEL	KRT32	ENST00000225899	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.R242fs	0.758	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	19	0	0	11	6	35.29	-	-	-	-	39620681	A	-	39620681	7	5	228	1	0	1	0	1	0	0	0	0	8521	233	9	0	639	0	KRT32	17	39620681	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	597639	39620681	41574529	1057	15163										
KRT36	0	genome.wustl.edu	37	chr17	39643672	39643672	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcagctcgatgatctccgtCtggcagcactgcagctgctc	10	15	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	39643672	39643672	C	T	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	silent	c.918	p.Q306	0.790	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	42	0	0	21	17	44.74	-	-	-	T	39643672	C	T	39643672	2	4	228	1	0	0	0	0	0	0	0	1	8526	912	32	2		2	KRT36	17	39643672	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	22991	39643672	41551538	1058	15164										
DHX58	0	genome.wustl.edu	37	chr17	40257762	40257762	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgaagcccacacctgggtcaTgtgggtgctctggctgctgt	14	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	40257762	40257762	T	C	SNP	DHX58	ENST00000251642	human	ensembl	69_37n	-1	known	missense	c.1243	p.M415V	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	72	0	0	36	18	33.33	-	-	-	C	40257762	T	C	40257762	3	2	228	1	0	0	0	0	1	0	0	0	4550	1464	51	5	817	5	DHX58	17	40257762	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	614090	40257762	40937448	1059	15165										
STAT3	0	genome.wustl.edu	37	chr17	40468893	40468893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagtgcggggggacatcggcAggtcaatggtattgctgcag	17	7	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	40468893	40468893	A	G	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	missense	c.2171	p.L724P	1.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	105	0	0	84	46	35.38	-	-	-	G	40468893	A	G	40468893	3	3	228	1	0	0	0	0	1	0	0	0	15357	188	7	5	149	5	STAT3	17	40468893	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	211131	40468893	40726317	1060	15166										
VPS25	0	genome.wustl.edu	37	chr17	40931072	40931072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgtcagcgatggccgaggCgtcaagttcttctagcaggg	14	10	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	40931072	40931072	C	T	SNP	VPS25	ENST00000589520	human	ensembl	69_37n	1	novel	missense	c.319	p.R107C	0.112	NULL	pfam_ESCRT-II_cplx_vps25-sub	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS25	HGNC	ENSG00000131475	51	0	0	22	14	38.89	-	-	-	T	40931072	C	T	40931072	3	4	228	1	0	0	0	0	1	0	0	0	17293	755	27	1	538	1	VPS25	17	40931072	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	462179	40931072	40264138	1061	15167										
GFAP	0	genome.wustl.edu	37	chr17	42985269	42985269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctatggagggactgaggaaaCggaattacattcagtttcct	11	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	42985269	42985269	C	T	SNP	GFAP	ENST00000591880	human	ensembl	69_37n	-1	putative	missense	c.286	p.V96I	0.000	NULL	NULL	-	no_start_codon	GFAP	HGNC	ENSG00000131095	43	0	0	30	18	37.5	-	-	-	T	42985269	C	T	42985269	3	4	228	1	0	0	0	0	1	0	0	0	6389	551	19	1		1	GFAP	17	42985269	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2054197	42985269	38209941	1062	15168										
FMNL1	0	genome.wustl.edu	37	chr17	43318794	43318794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggggccctccaggcgtcccCcagagcctgagaaagcgcct	13	16	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	43318794	43318794	C	A	SNP	FMNL1	ENST00000328118	human	ensembl	69_37n	1	known	missense	c.1378	p.P460T	0.009	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL1	HGNC	ENSG00000184922	14	0	0	10	6	37.5	-	-	-	A	43318794	C	A	43318794	3	1	228	1	0	0	0	0	1	0	0	0	5997	623	22	4	1432	4	FMNL1	17	43318794	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	333525	43318794	37876416	1063	15169										
SCRN2	0	genome.wustl.edu	37	chr17	45917622	45917622	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccttcgtccacacagcctcGttgccaatgcagacaccatg	7	16	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	45917622	45917622	G	A	SNP	SCRN2	ENST00000290216	human	ensembl	69_37n	-1	known	silent	c.291	p.N97	0.990	pfam_Peptidase_C69,pfam_Pept_C45_AAT	pfam_Peptidase_C69,pfam_Pept_C45_AAT	-	no_errors	SCRN2	HGNC	ENSG00000141295	51	0	0	34	29	46.03	-	-	-	A	45917622	G	A	45917622	2	1	228	1	0	0	0	0	0	0	0	1	14027	1136	40	1		1	SCRN2	17	45917622	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2598828	45917622	35277588	1064	15170										
NFE2L1	0	genome.wustl.edu	37	chr17	46136540	46136540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgggatgagcaccgagcccGagccatgaagatccctttca	11	14	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	46136540	46136540	G	A	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	missense	c.1856	p.R619Q	1.000	superfamily_Euk_TF_DNA-bd	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	106	0	0	65	58	47.15	-	-	-	A	46136540	G	A	46136540	3	1	228	1	0	0	0	0	1	0	0	0	10439	1058	37	1	1874	1	NFE2L1	17	46136540	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	218918	46136540	35058670	1065	15171										
SLC35B1	0	genome.wustl.edu	37	chr17	47784778	47784778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggttgtttgcaagcatctgGgagtaccaaaagggggccga	15	7	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	47784778	47784778	G	T	SNP	SLC35B1	ENST00000508520	human	ensembl	69_37n	-1	putative	missense	c.40	p.P14T	0.000	NULL	pfam_UAA,pfam_DMT	-	no_stop_codon	SLC35B1	HGNC	ENSG00000121073	13	0	0	3	5	62.5	-	-	-	T	47784778	G	T	47784778	3	4	228	1	0	0	0	0	1	0	0	0	14664	1247	43	4		4	SLC35B1	17	47784778	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1648238	47784778	33410432	1066	15172										
XYLT2	0	genome.wustl.edu	37	chr17	48433200	48433200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgcgactcacacatgtggCgcctgggcgagcggcagatc	15	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	48433200	48433200	C	T	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	missense	c.1147	p.R383C	1.000	pfam_Glyco_trans_14	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	50	0	0	31	16	34.04	-	-	-	T	48433200	C	T	48433200	3	4	228	1	0	0	0	0	1	0	0	0	17561	768	27	1	1169	1	XYLT2	17	48433200	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	648422	48433200	32762010	1067	15173										
MBTD1	0	genome.wustl.edu	37	chr17	49280166	49280166	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgttctatcttcgctttctTcatacactagtcttaatctt	3	11	6	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	49280166	49280166	T	C	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.959	p.E320G	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	133	0	0	81	60	42.55	-	-	-	C	49280166	T	C	49280166	3	2	228	1	0	0	0	0	1	0	0	0	9431	1783	62	5	959	5	MBTD1	17	49280166	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	846966	49280166	31915044	1068	15174										
RNF43	0	genome.wustl.edu	37	chr17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggggtgggctcggagggaCccccccgccttttcctctgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	69_37n	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	126	0	0	94	43	30.71	-	-	-	-	56435161	C	-	56435161	7	5	228	1	0	1	0	1	0	0	0	0	13581	507	18	0	383	0	RNF43	17	56435161	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	7154995	56435161	24760049	1069	15175										
HEATR6	0	genome.wustl.edu	37	chr17	58133511	58133511	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgaatggatggatctgcttCccccatgcacttgcaaatca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	58133511	58133511	C	-	DEL	HEATR6	ENST00000184956	human	ensembl	69_37n	-1	known	frame_shift_del	c.2167	p.E723fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097	262	0	0	155	80	33.76	-	-	-	-	58133511	C	-	58133511	7	5	228	1	0	1	0	1	0	0	0	0	7084	864	30	0	1410	0	HEATR6	17	58133511	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	1698350	58133511	23061699	1070	15176										
TBX4	0	genome.wustl.edu	37	chr17	59557553	59557553	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccctgctcggcacccaccaGgcactccagcactaccagca	7	21	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	59557553	59557553	G	A	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	1	known	silent	c.894	p.Q298	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	53	0	0	55	39	41.49	-	-	-	A	59557553	G	A	59557553	2	1	228	1	0	0	0	0	0	0	0	1	15755	991	35	4		4	TBX4	17	59557553	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1424042	59557553	21637657	1071	15177										
TLK2	0	genome.wustl.edu	37	chr17	60678125	60678125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcatgcagattgtgaatgCtttaaagtacttaaatgaaa	7	4	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	60678125	60678125	C	T	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	1	known	missense	c.1730	p.A577V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	82	0	0	75	54	41.54	-	-	-	T	60678125	C	T	60678125	3	4	228	1	0	0	0	0	1	0	0	0	16039	797	28	4	1730	4	TLK2	17	60678125	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1120572	60678125	20517085	1072	15178										
DDX42	0	genome.wustl.edu	37	chr17	61894415	61894415	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttttcctggttgtagctgggCgcctaggcttgatgctagat	13	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	61894415	61894415	C	T	SNP	DDX42	ENST00000582985	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX42	HGNC	ENSG00000198231	63	0	0	34	23	40.35	-	-	-	T	61894415	C	T	61894415	1	4	228	0	1	0	0	0	0	0	0	0	4393	783	27	1		1	DDX42	17	61894415	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1216290	61894415	19300795	1073	15179										
SOX9	0	genome.wustl.edu	37	chr17	70119910	70119910	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgccgcccaacggccacccGggggtgccggccacgcacgg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	70119910	70119910	G	-	DEL	SOX9	ENST00000245479	human	ensembl	69_37n	1	known	frame_shift_del	c.912	p.V306fs	0.153	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	28	0	0	24	13	34.21	-	-	-	-	70119910	G	-	70119910	7	5	228	1	0	1	0	1	0	0	0	0	15047	1103	39	0	922	0	SOX9	17	70119910	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	8225495	70119910	11075300	1074	15180										
SLC9A3R1	0	genome.wustl.edu	37	chr17	72758269	72758269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtcagtggacccagactcccCggctgaggcttcagggctcc	13	15	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	72758269	72758269	C	G	SNP	SLC9A3R1	ENST00000262613	human	ensembl	69_37n	1	known	missense	c.560	p.P187R	0.916	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	pfam_PDZ,pfam_EBP50_C-term,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	-	no_errors	SLC9A3R1	HGNC	ENSG00000109062	53	0	0	26	22	45.83	-	-	-	G	72758269	C	G	72758269	3	3	228	1	0	0	0	0	1	0	0	0	14803	652	23	3	566	3	SLC9A3R1	17	72758269	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2638359	72758269	8436941	1075	15181										
SLC16A5	0	genome.wustl.edu	37	chr17	73100284	73100284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgagatcatgtatgtaaCcagcgtctaagacccagggt	10	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	73100284	73100284	C	A	SNP	SLC16A5	ENST00000538213	human	ensembl	69_37n	1	putative	missense	c.1493	p.T498N	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	38	0	0	34	23	40.35	-	-	-	A	73100284	C	A	73100284	3	1	228	1	0	0	0	0	1	0	0	0	14500	522	18	4		4	SLC16A5	17	73100284	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	342015	73100284	8094926	1076	15182										
UNC13D	0	genome.wustl.edu	37	chr17	73836605	73836605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacctgcagcctcagaaccaCgttccccagaaagtcgtcct	7	17	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	73836605	73836605	C	T	SNP	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	missense	c.736	p.V246M	0.999	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	UNC13D	HGNC	ENSG00000092929	45	0	0	36	31	46.27	-	-	-	T	73836605	C	T	73836605	3	4	228	1	0	0	0	0	1	0	0	0	17084	536	19	1	2632	1	UNC13D	17	73836605	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	736321	73836605	7358605	1077	15183										
MFSD11	0	genome.wustl.edu	37	chr17	74771156	74771156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctgttgggcatcctggtgCacttcatagctttttatcta	9	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	74771156	74771156	C	T	SNP	MFSD11	ENST00000336509	human	ensembl	69_37n	1	known	missense	c.952	p.H318Y	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD11	HGNC	ENSG00000092931	251	0	0	168	121	41.87	-	-	-	T	74771156	C	T	74771156	3	4	228	1	0	0	0	0	1	0	0	0	9600	710	25	4	994	4	MFSD11	17	74771156	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	934551	74771156	6424054	1078	15184										
DNAH17	0	genome.wustl.edu	37	chr17	76497919	76497919	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtcgccagcgttgaggttccCcatgagcagcgtgatgagta	14	10	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	76497919	76497919	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.5194	p.G1732W	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	63	0	0	29	17	36.96	-	-	-	A	76497919	C	A	76497919	3	1	228	1	0	0	0	0	1	0	0	0	4637	623	22	4	8353	4	DNAH17	17	76497919	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1726763	76497919	4697291	1079	15185										
RNF213	0	genome.wustl.edu	37	chr17	78346803	78346803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggagaagcagtgctacctGcagcaagtcaagcagttctg	12	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	78346803	78346803	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.12780	p.L4260	0.771	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	17	0	0	7	8	53.33	-	-	-	A	78346803	G	A	78346803	2	1	228	1	0	0	0	0	0	0	0	1	13563	1306	46	4		4	RNF213	17	78346803	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1848884	78346803	2848407	1080	15186										
NOTUM	0	genome.wustl.edu	37	chr17	79911043	79911043	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggacggggcagcccttgaGgggggtcttgctggccttgt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	17	79911043	79911043	G	-	DEL	NOTUM	ENST00000409678	human	ensembl	69_37n	-1	known	frame_shift_del	c.1285	p.L429fs	0.933	NULL	pfam_Pec_acetylest	-	no_errors	NOTUM	HGNC	ENSG00000185269	33	0	0	20	14	37.84	-	-	-	-	79911043	G	-	79911043	7	5	228	1	0	1	0	1	0	0	0	0	10624	1000	35	0	209	0	NOTUM	17	79911043	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	1564240	79911043	1284167	1081	15187										
DLGAP1	0	genome.wustl.edu	37	chr18	3879149	3879149	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcgttcttgctgacacgacTcggacttcaccatggcctgg	11	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	3879149	3879149	T	C	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.920	p.E307G	0.999	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	58	0	0	10	38	79.17	-	-	-	C	3879149	T	C	3879149	3	2	228	1	0	0	0	0	1	0	0	0	4595	1551	54	5	2108	5	DLGAP1	18	3879149	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09		3879149	74198099	1082	15188										
EPB41L3	0	genome.wustl.edu	37	chr18	5423422	5423422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ataacgtttgctggatgagcGttcaaagtaaggtgctgggc	14	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	5423422	5423422	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.1294	p.R432C	1.000	pirsf_Band_41_protein,pfam_FERM-adjacent	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	147	0	0	20	63	75.9	-	-	-	A	5423422	G	A	5423422	3	1	228	1	0	0	0	0	1	0	0	0	5191	1145	40	1	2017	1	EPB41L3	18	5423422	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1544273	5423422	72653826	1083	15189										
TMEM200C	0	genome.wustl.edu	37	chr18	5891698	5891698	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgcggaactggagttgacaCcccctggagccctagggtgg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	5891698	5891698	C	-	DEL	TMEM200C	ENST00000383490	human	ensembl	69_37n	-1	known	frame_shift_del	c.365	p.G122fs	0.000	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432	17	0	0	1	7	87.5	-	-	-	-	5891698	C	-	5891698	7	5	228	1	0	1	0	1	0	0	0	0	16220	507	18	0	1504	0	TMEM200C	18	5891698	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	468276	5891698	72185550	1084	15190										
PTPRM	0	genome.wustl.edu	37	chr18	8069972	8069972	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaaggaaagccaagaactcaTagtgcagacagatgaagacc	11	8	1	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	8069972	8069972	T	C	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.1421	p.I474T	0.101	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	175	0	0	23	43	65.15	-	-	-	C	8069972	T	C	8069972	3	2	228	1	0	0	0	0	1	0	0	0	12889	1406	49	5	1451	5	PTPRM	18	8069972	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2178274	8069972	70007276	1085	15191										
ANKRD12	0	genome.wustl.edu	37	chr18	9258292	9258293	+	Frame_Shift_Del	DEL	AA	AA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaacattgtcctgaaagtgAaaagtgtttgctttccatag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	9258292	9258293	AA	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.5027_5028	p.K1677fs	0.983:0.990	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	170	0	0	22	52	70.27	-	-	-	-	9258293	AA	-	9258292	7	5	228	1	0	1	0	1	0	0	0	0	640	246	9	0	5057	0	ANKRD12	18	9258292	Frame_Shift_Del	DEL	AA	TCGA-A8-A09Z-01A-11W-A019-09	1188320	9258292	68818956	1086	15192										
MOCOS	0	genome.wustl.edu	37	chr18	33793417	33793417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagaggcacctgggcataaGcaacgagatggtcaggaagc	14	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	33793417	33793417	G	A	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	missense	c.1307	p.S436N	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	53	0	0	10	19	65.52	-	-	-	A	33793417	G	A	33793417	3	1	228	1	0	0	0	0	1	0	0	0	9761	971	34	4	1333	4	MOCOS	18	33793417	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	24535125	33793417	44283831	1087	15193										
PIAS2	0	genome.wustl.edu	37	chr18	44470866	44470866	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatatcggcgtctatacaatTctcggattttaatctgaacc	7	9	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	44470866	44470866	T	C	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.176	p.E59G	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	232	0	0	45	94	67.63	-	-	-	C	44470866	T	C	44470866	3	2	228	1	0	0	0	0	1	0	0	0	11950	1783	62	5	1816	5	PIAS2	18	44470866	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	10677449	44470866	33606382	1088	15194										
PIAS2	0	genome.wustl.edu	37	chr18	44470887	44470887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcggattttaatctgaaccGcagggctgcagccgctcttc	10	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	44470887	44470887	G	A	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.155	p.A52V	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	236	0	0	46	108	69.68	-	-	-	A	44470887	G	A	44470887	3	1	228	1	0	0	0	0	1	0	0	0	11950	1087	38	1	1837	1	PIAS2	18	44470887	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	21	44470887	33606361	1089	15195										
MYO5B	0	genome.wustl.edu	37	chr18	47361776	47361776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttcattcaggggagtataaaGgtttaaaattttgacaatct	8	4	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	47361776	47361776	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.5332	p.L1778F	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	153	0	0	94	18	16.07	-	-	-	A	47361776	G	A	47361776	3	1	228	1	0	0	0	0	1	0	0	0	10151	1000	35	4	222	4	MYO5B	18	47361776	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2890889	47361776	30715472	1090	15196										
SMAD4	0	genome.wustl.edu	37	chr18	48584514	48584514	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtcagcctgccagtatactGgggggcagccatagtgaagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	48584514	48584514	G	-	DEL	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	frame_shift_del	c.687	p.G231fs	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	202	0	0	39	61	57.55	-	-	-	-	48584514	G	-	48584514	7	5	228	1	0	1	0	1	0	0	0	0	14849	1335	47	0	705	0	SMAD4	18	48584514	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	1222738	48584514	29492734	1091	15197										
LMAN1	0	genome.wustl.edu	37	chr18	57013231	57013231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgttgaaagtgctcaaatTcctcctgatacttttctttt	5	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	57013231	57013231	T	C	SNP	LMAN1	ENST00000251047	human	ensembl	69_37n	-1	known	missense	c.875	p.E292G	1.000	superfamily_HMG_superfamily	pfam_Lectin_leg,superfamily_ConA-like_lec_gl,superfamily_HMG_superfamily	-	no_errors	LMAN1	HGNC	ENSG00000074695	469	0	0	62	209	77.12	-	-	-	C	57013231	T	C	57013231	3	2	228	1	0	0	0	0	1	0	0	0	8892	1783	62	5	681	5	LMAN1	18	57013231	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	8428717	57013231	21064017	1092	15198										
PIGN	0	genome.wustl.edu	37	chr18	59756060	59756060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatatcagtattataagagaActggatactggtgagctgtg	11	4	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	59756060	59756060	A	G	SNP	PIGN	ENST00000357637	human	ensembl	69_37n	-1	known	missense	c.2299	p.F767L	0.997	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563	30	0	0	5	11	68.75	-	-	-	G	59756060	A	G	59756060	3	3	228	1	0	0	0	0	1	0	0	0	11967	43	2	5	524	5	PIGN	18	59756060	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2742829	59756060	18321188	1093	15199										
CDH7	0	genome.wustl.edu	37	chr18	63430237	63430237	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcagctgggtgtggaatcaGttctttgtgctggaggaata	15	6	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	63430237	63430237	G	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	silent	c.159	p.Q53	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	76	0	0	8	28	77.78	-	-	-	A	63430237	G	A	63430237	2	1	228	1	0	0	0	0	0	0	0	1	3144	1020	36	4		4	CDH7	18	63430237	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3674177	63430237	14647011	1094	15200										
CDH19	0	genome.wustl.edu	37	chr18	64176429	64176429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agatggagatgtagaagacaGgttcttcttgaaggttaaaa	12	3	2	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	64176429	64176429	G	T	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	missense	c.1631	p.P544H	0.031	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	193	0	0	26	78	75	-	-	-	T	64176429	G	T	64176429	3	4	228	1	0	0	0	0	1	0	0	0	3133	1000	35	4	695	4	CDH19	18	64176429	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	746192	64176429	13900819	1095	15201										
ZNF236	0	genome.wustl.edu	37	chr18	74607032	74607032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctactgcgccaaggagttccGcaagcccagcgacctggtcc	11	16	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	74607032	74607032	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	missense	c.1475	p.R492H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	56	0	0	15	15	50	-	-	-	A	74607032	G	A	74607032	3	1	228	1	0	0	0	0	1	0	0	0	17885	1087	38	1	1513	1	ZNF236	18	74607032	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	10430603	74607032	3470216	1096	15202										
ZNF236	0	genome.wustl.edu	37	chr18	74680225	74680225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggacggggaggagctgagccGgaccctccacctggaggagg	19	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	74680225	74680225	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	missense	c.5468	p.R1823Q	0.089	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	114	0	0	17	43	71.67	-	-	-	A	74680225	G	A	74680225	3	1	228	1	0	0	0	0	1	0	0	0	17885	1116	39	1	5590	1	ZNF236	18	74680225	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	73193	74680225	3397023	1097	15203										
CTDP1	0	genome.wustl.edu	37	chr18	77477567	77477567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgctgcaggcacaggagtgcGgacacctgcacgtggtcaac	14	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	18	77477567	77477567	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	69_37n	1	known	missense	c.2101	p.G701R	0.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069	18	0	0	2	17	89.47	-	-	-	A	77477567	G	A	77477567	3	1	228	1	0	0	0	0	1	0	0	0	4034	1117	39	1	2135	1	CTDP1	18	77477567	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2797342	77477567	599681	1098	15204										
POLRMT	0	genome.wustl.edu	37	chr19	623456	623456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccccggctcagcccctaccgCgtgcttgacctccttgcttg	9	19	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	623456	623456	C	T	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.1333	p.A445T	0.960	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	19	0	0	11	5	31.25	-	-	-	T	623456	C	T	623456	3	4	228	1	0	0	0	0	1	0	0	0	12312	768	27	1	2468	1	POLRMT	19	623456	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09		623456	58505527	1099	15205										
HMHA1	0	genome.wustl.edu	37	chr19	1080298	1080298	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagcagcttcaacgtgagtgAtgtggcgcggccggaggctg	18	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	1080298	1080298	A	G	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	missense	c.1748	p.D583G	0.514	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	30	0	0	23	12	34.29	-	-	-	G	1080298	A	G	1080298	3	3	228	1	0	0	0	0	1	0	0	0	7291	333	12	5	1802	5	HMHA1	19	1080298	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	456842	1080298	58048685	1100	15206										
MKNK2	0	genome.wustl.edu	37	chr19	2046205	2046205	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgacggcgtactcctggcTggtgatcaggttgatgcagg	15	9	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	2046205	2046205	T	A	SNP	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	missense	c.319	p.S107C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	21	0	0	5	4	44.44	-	-	-	A	2046205	T	A	2046205	3	1	228	1	0	0	0	0	1	0	0	0	9676	1580	55	5	1213	5	MKNK2	19	2046205	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	965907	2046205	57082778	1101	15207										
GNA11	0	genome.wustl.edu	37	chr19	3113346	3113346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggccaatgcgctcctgatcCgggaggtggacgtggagaag	17	9	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	3113346	3113346	C	T	SNP	GNA11	ENST00000078429	human	ensembl	69_37n	1	known	missense	c.340	p.R114W	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_GproteinA	-	no_errors	GNA11	HGNC	ENSG00000088256	12	0	0	7	8	53.33	-	-	-	T	3113346	C	T	3113346	3	4	228	1	0	0	0	0	1	0	0	0	6551	643	23	1	350	1	GNA11	19	3113346	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1067141	3113346	56015637	1102	15208										
STAP2	0	genome.wustl.edu	37	chr19	4327141	4327141	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctagcaccttctcgtagtccTcgtctaacaggaatggcacc	8	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	4327141	4327141	T	C	SNP	STAP2	ENST00000314714	human	ensembl	69_37n	-1	known	missense	c.743	p.E248G	0.996	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078	79	0	0	34	27	43.55	-	-	-	C	4327141	T	C	4327141	3	2	228	1	0	0	0	0	1	0	0	0	15344	1551	54	5	630	5	STAP2	19	4327141	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1213795	4327141	54801842	1103	15209										
SLC25A23	0	genome.wustl.edu	37	chr19	6444206	6444206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagggccagcgggtaactgGctatctggccgcaggtgctg	16	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	6444206	6444206	G	A	SNP	SLC25A23	ENST00000264088	human	ensembl	69_37n	-1	known	missense	c.1319	p.A440V	1.000	superfamily_Mt_carrier_dom,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A23	HGNC	ENSG00000125648	11	0	0	6	7	53.85	-	-	-	A	6444206	G	A	6444206	3	1	228	1	0	0	0	0	1	0	0	0	14575	1203	42	4	236	4	SLC25A23	19	6444206	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2117065	6444206	52684777	1104	15210										
ZNF414	0	genome.wustl.edu	37	chr19	8577299	8577299	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcgattgggtttgtagtgcaGtttgctgtgagccaccagct	14	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	8577299	8577299	G	A	SNP	ZNF414	ENST00000393927	human	ensembl	69_37n	-1	known	silent	c.502	p.L168	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF414	HGNC	ENSG00000133250	26	0	0	22	19	46.34	-	-	-	A	8577299	G	A	8577299	2	1	228	1	0	0	0	0	0	0	0	1	17987	1020	36	4		4	ZNF414	19	8577299	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2133093	8577299	50551684	1105	15211										
OR7D2	0	genome.wustl.edu	37	chr19	9296843	9296843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtttgtggctgtctgccaccCtctgcactatatgatcatca	8	12	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	9296843	9296843	C	A	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.386	p.P129H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	456	1	0.22	320	201	38.58	-	-	-	A	9296843	C	A	9296843	3	1	228	1	0	0	0	0	1	0	0	0	11292	681	24	4	388	4	OR7D2	19	9296843	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	719544	9296843	49832140	1106	15212										
DNM2	0	genome.wustl.edu	37	chr19	10906076	10906076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgacgagaaggacttacgacGggagatcagctatgccatta	12	8	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	10906076	10906076	G	A	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	missense	c.1157	p.R386Q	0.994	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	132	0	0	78	60	43.17	-	-	-	A	10906076	G	A	10906076	3	1	228	1	0	0	0	0	1	0	0	0	4707	1116	39	1	1191	1	DNM2	19	10906076	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1609233	10906076	48222907	1107	15213										
YIPF2	0	genome.wustl.edu	37	chr19	11034830	11034830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgtcaggttgccagtgacggCcaggacaaaggccaacgtgg	15	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	11034830	11034830	C	T	SNP	YIPF2	ENST00000253031	human	ensembl	69_37n	-1	known	missense	c.406	p.A136T	0.953	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF2	HGNC	ENSG00000130733	17	0	0	16	6	25	-	-	-	T	11034830	C	T	11034830	3	4	228	1	0	0	0	0	1	0	0	0	17575	739	26	4	560	4	YIPF2	19	11034830	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	128754	11034830	48094153	1108	15214										
TMEM205	0	genome.wustl.edu	37	chr19	11456197	11456197	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccaagctgagggtccctaccTgagacgaaggtcacccacat	10	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	11456197	11456197	T	C	SNP	TMEM205	ENST00000354882	human	ensembl	69_37n	-1	known	silent	c.99	p.S33	1.000	NULL	NULL	-	no_errors	TMEM205	HGNC	ENSG00000105518	87	0	0	55	40	42.11	-	-	-	C	11456197	T	C	11456197	2	2	228	1	0	0	0	0	0	0	0	1	16225	1594	55	5		5	TMEM205	19	11456197	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	421367	11456197	47672786	1109	15215										
ZNF878	0	genome.wustl.edu	37	chr19	12154981	12154981	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgtgtgagttcgtatgtgcTtttgaaggactgaggcagat							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	12154981	12154981	T	-	DEL	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1235	p.K412fs	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	184	0	0	127	63	32.81	-	-	-	-	12154981	T	-	12154981	7	5	228	1	0	1	0	1	0	0	0	0	18289	1609	56	0	364	0	ZNF878	19	12154981	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	698784	12154981	46974002	1110	15216										
FARSA	0	genome.wustl.edu	37	chr19	13041102	13041103	+	Frame_Shift_Ins	INS	-	-	C													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccccagcttctcagcctgtINScccccccggaccagctggag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	13041102	13041103	-	C	INS	FARSA	ENST00000314606	human	ensembl	69_37n	-1	known	frame_shift_ins	c.438_437	p.Q147fs	0.431:0.999	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	-	no_errors	FARSA	HGNC	ENSG00000179115	53	0	0	73	20	21.51	-	-	-	C	13041103	-	C	13041102	7	5	228	1	0	1	1	0	0	0	0	0	5725	1654	58	0	1128	0	FARSA	19	13041102	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	886121	13041102	46087881	1111	15217										
RAD23A	0	genome.wustl.edu	37	chr19	13063583	13063583	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcggacatctcagatgtggaGggggaggtgggcgccatagg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	13063583	13063583	G	-	DEL	RAD23A	ENST00000586534	human	ensembl	69_37n	1	known	frame_shift_del	c.894	p.E300fs	1.000	superfamily_UBA-like,tigrfam_Rad23	pfam_XPC-bd,pfam_UBA/transl_elong_EF1B_N,pfam_Ubiquitin,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,prints_Rad23,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	-	no_errors	RAD23A	HGNC	ENSG00000179262	41	0	0	43	26	37.68	-	-	-	-	13063583	G	-	13063583	7	5	228	1	0	1	0	1	0	0	0	0	13065	991	35	0	924	0	RAD23A	19	13063583	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	22481	13063583	46065400	1112	15218										
ZSWIM4	0	genome.wustl.edu	37	chr19	13941204	13941204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgaaggaccctcagaactgCgccttgcctgccctgaccct	9	16	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	13941204	13941204	C	T	SNP	ZSWIM4	ENST00000592227	human	ensembl	69_37n	1	putative	missense	c.694	p.R232C	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZSWIM4	HGNC	ENSG00000132003	184	0	0	102	52	33.77	-	-	-	T	13941204	C	T	13941204	3	4	228	1	0	0	0	0	1	0	0	0	18334	776	27	1	2360	1	ZSWIM4	19	13941204	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	877621	13941204	45187779	1113	15219										
AKAP8	0	genome.wustl.edu	37	chr19	15473031	15473031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcttcgtcatcaaagctacGgaacttgcatacagaacagg	8	11	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	15473031	15473031	G	A	SNP	AKAP8	ENST00000269701	human	ensembl	69_37n	-1	known	missense	c.1192	p.R398C	1.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127	44	0	0	26	18	40.91	-	-	-	A	15473031	G	A	15473031	3	1	228	1	0	0	0	0	1	0	0	0	457	1116	39	1	906	1	AKAP8	19	15473031	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1531827	15473031	43655952	1114	15220										
RASAL3	0	genome.wustl.edu	37	chr19	15565311	15565311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtccaggaagcattgcatgGctggtccatgttcctccagg	13	11	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	15565311	15565311	G	A	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.2021	p.A674V	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	41	0	0	25	20	44.44	-	-	-	A	15565311	G	A	15565311	3	1	228	1	0	0	0	0	1	0	0	0	13148	1203	42	4	1038	4	RASAL3	19	15565311	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	92280	15565311	43563672	1115	15221										
RASAL3	0	genome.wustl.edu	37	chr19	15565528	15565528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgagggtgcgggctgggCcgggtgctggatggtctggt	23	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	15565528	15565528	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.1898	p.G633D	0.599	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	11	0	0	4	6	60	-	-	-	T	15565528	C	T	15565528	3	4	228	1	0	0	0	0	1	0	0	0	13148	739	26	4	1165	4	RASAL3	19	15565528	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	217	15565528	43563455	1116	15222										
CPAMD8	0	genome.wustl.edu	37	chr19	17025577	17025577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcccgggggtccacgaagaTaaagctgcgagcctgtgcga	14	12	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	17025577	17025577	T	C	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.3817	p.I1273V	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	17	0	0	5	13	72.22	-	-	-	C	17025577	T	C	17025577	3	2	228	1	0	0	0	0	1	0	0	0	3825	1406	49	5	2041	5	CPAMD8	19	17025577	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1460049	17025577	42103406	1117	15223										
USHBP1	0	genome.wustl.edu	37	chr19	17367326	17367326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttgtgtcttctccagtcggGgaagagctgggccagcctgg	15	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	17367326	17367326	G	A	SNP	USHBP1	ENST00000252597	human	ensembl	69_37n	-1	known	missense	c.1424	p.P475L	0.927	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	72	0	0	47	35	42.68	-	-	-	A	17367326	G	A	17367326	3	1	228	1	0	0	0	0	1	0	0	0	17134	1232	43	4	707	4	USHBP1	19	17367326	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	341749	17367326	41761657	1118	15224										
PIK3R2	0	genome.wustl.edu	37	chr19	18277081	18277081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggaatacctggagcgcttcCggcgtgagggcaacgagaaa	15	9	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	18277081	18277081	C	T	SNP	PIK3R2	ENST00000222254	human	ensembl	69_37n	1	known	missense	c.1528	p.R510W	1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647	38	0	0	20	17	45.95	-	-	-	T	18277081	C	T	18277081	3	4	228	1	0	0	0	0	1	0	0	0	11993	643	23	1	1570	1	PIK3R2	19	18277081	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	909755	18277081	40851902	1119	15225										
RAB3A	0	genome.wustl.edu	37	chr19	18313509	18313509	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tagtcgaagttctgatccgaGgactccttctgcccatagcg	10	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	18313509	18313509	G	T	SNP	RAB3A	ENST00000222256	human	ensembl	69_37n	-1	known	silent	c.42	p.S14	0.991	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3A	HGNC	ENSG00000105649	95	0	0	83	41	33.06	-	-	-	T	18313509	G	T	18313509	2	4	228	1	0	0	0	0	0	0	0	1	13014	987	35	4		4	RAB3A	19	18313509	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	36428	18313509	40815474	1120	15226										
ZNF431	0	genome.wustl.edu	37	chr19	21349204	21349204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agtgggaatgcctgaaccctGctcagcagaatttatatatg	10	8	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	21349204	21349204	G	A	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.163	p.A55T	0.010	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	346	0	0	183	133	42.09	-	-	-	A	21349204	G	A	21349204	3	1	228	1	0	0	0	0	1	0	0	0	18001	1319	46	4	173	4	ZNF431	19	21349204	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3035695	21349204	37779779	1121	15227										
TSHZ3	0	genome.wustl.edu	37	chr19	31769142	31769142	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggatttgaggatatcaagCccccccttgggactctcttc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	31769142	31769142	C	-	DEL	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	frame_shift_del	c.1557	p.D521fs	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	295	0	0	218	94	29.56	-	-	-	-	31769142	C	-	31769142	7	5	228	1	0	1	0	1	0	0	0	0	16721	726	26	0	1692	0	TSHZ3	19	31769142	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	10419938	31769142	27359841	1122	15228										
RHPN2	0	genome.wustl.edu	37	chr19	33470970	33470970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcttcttgacctgaggccGtgcagccccgaccgatggga	12	14	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	33470970	33470970	G	A	SNP	RHPN2	ENST00000254260	human	ensembl	69_37n	-1	known	missense	c.1993	p.R665W	0.319	NULL	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941	198	0	0	135	119	46.85	-	-	-	A	33470970	G	A	33470970	3	1	228	1	0	0	0	0	1	0	0	0	13435	1144	40	1	71	1	RHPN2	19	33470970	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1701828	33470970	25658013	1123	15229										
FXYD5	0	genome.wustl.edu	37	chr19	35657211	35657212	+	In_Frame_Ins	INS	-	-	CAT													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctgtgctgttcatcacaggINScatcatcatcctcaccagtg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	35657211	35657212	-	CAT	INS	FXYD5	ENST00000342879	human	ensembl	69_37n	1	known	in_frame_ins	c.470_471	p.161in_frame_insI	0.988:0.985	pfam_Ion-transport_regulator_FXYD	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD5	HGNC	ENSG00000089327	233	0	0	159	66	29.33	-	-	-	CAT	35657212	-	CAT	35657211	7	5	228	1	0	1	1	0	0	0	0	0	6170	1203	42	0	496	0	FXYD5	19	35657211	In_Frame_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	2186241	35657211	23471772	1124	15230										
ATP4A	0	genome.wustl.edu	37	chr19	36048565	36048565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caggggtctcaccgagcacgCgttcgcccaggcctcccagg	13	17	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	36048565	36048565	C	T	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.1685	p.R562H	1.000	superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	29	0	0	15	13	46.43	-	-	-	T	36048565	C	T	36048565	3	4	228	1	0	0	0	0	1	0	0	0	1149	768	27	1	1470	1	ATP4A	19	36048565	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	391354	36048565	23080418	1125	15231										
MLL4	0	genome.wustl.edu	37	chr19	36210764	36210764	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctagcagatgtggctcctaCccccccaaagacccctgccc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	36210764	36210764	C	-	DEL	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_del	c.515	p.P174fs	0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	48	0	0	39	27	40.91	-	-	-	-	36210764	C	-	36210764	7	5	228	1	0	1	0	1	0	0	0	0	9694	507	18	0	525	0	MLL4	19	36210764	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	162199	36210764	22918219	1126	15232										
PSENEN	0	genome.wustl.edu	37	chr19	36237746	36237746	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccatacccctgggcacccccTgacaacttctgcacatactg	6	18	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	36237746	36237746	T	C	SNP	PSENEN	ENST00000222266	human	ensembl	69_37n	1	known	nonstop	c.304	p.*102R	1.000	NULL	pfam_Gamma_Secretase_Asp_P_PEN2	-	no_errors	PSENEN	HGNC	ENSG00000205155	48	0	0	22	17	43.59	-	-	-	C	36237746	T	C	36237746	4	2	228	1	0	0	0	0	0	0	0	0	12732	1593	55	5	314	5	PSENEN	19	36237746	Nonstop_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	26982	36237746	22891237	1127	15233										
ZNF567	0	genome.wustl.edu	37	chr19	37209935	37209936	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagttgtaagcatcaaccacINSaaaaaactggtgaaggagaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	37209935	37209936	-	A	INS	ZNF567	ENST00000536254	human	ensembl	69_37n	1	known	frame_shift_ins	c.309_310	p.L105fs	0.034:0.038	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042	116	0	0	79	32	28.83	-	-	-	A	37209936	-	A	37209935	7	5	228	1	0	1	1	0	0	0	0	0	18094	477	17	0	226	0	ZNF567	19	37209935	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	972189	37209935	21919048	1128	15234										
ZNF573	0	genome.wustl.edu	37	chr19	38230318	38230318	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcttacactccttacattcaTagggttttccacctttatga	4	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	38230318	38230318	T	G	SNP	ZNF573	ENST00000590414	human	ensembl	69_37n	-1	known	missense	c.1073	p.Y358S	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144	423	1	0.23	270	148	35.24	-	-	-	G	38230318	T	G	38230318	3	3	228	1	0	0	0	0	1	0	0	0	18101	1406	49	5	928	5	ZNF573	19	38230318	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1020383	38230318	20898665	1129	15235										
SIPA1L3	0	genome.wustl.edu	37	chr19	38610122	38610122	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggccaccaggacccgccaggAgtatctcaaggacctggccg	13	15	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	38610122	38610122	A	C	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.2468	p.E823A	1.000	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	71	0	0	56	29	34.12	-	-	-	C	38610122	A	C	38610122	3	2	228	1	0	0	0	0	1	0	0	0	14420	304	11	5	2494	5	SIPA1L3	19	38610122	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	379804	38610122	20518861	1130	15236										
FBXO27	0	genome.wustl.edu	37	chr19	39516186	39516186	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcttgatgttggagaacacGtgggtgacctgtaggcagag	15	6	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	39516186	39516186	G	A	SNP	FBXO27	ENST00000292853	human	ensembl	69_37n	-1	known	silent	c.717	p.H239	0.774	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO27	HGNC	ENSG00000161243	40	0	0	30	28	48.28	-	-	-	A	39516186	G	A	39516186	2	1	228	1	0	0	0	0	0	0	0	1	5783	1136	40	1		1	FBXO27	19	39516186	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	906064	39516186	19612797	1131	15237										
PLEKHG2	0	genome.wustl.edu	37	chr19	39913629	39913629	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccaaccttcctgaaattccCagccgctgtgaaattcccga	6	16	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	39913629	39913629	C	A	SNP	PLEKHG2	ENST00000205135	human	ensembl	69_37n	1	putative	missense	c.1538	p.P513Q	0.038	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHG2	HGNC	ENSG00000090924	275	0	0	202	141	41.11	-	-	-	A	39913629	C	A	39913629	3	1	228	1	0	0	0	0	1	0	0	0	12143	581	21	4	2001	4	PLEKHG2	19	39913629	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	397443	39913629	19215354	1132	15238										
FBL	0	genome.wustl.edu	37	chr19	40325426	40325426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaggcaaacacggcctcggCtgaggctgtggagtcaatgc	16	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	40325426	40325426	C	T	SNP	FBL	ENST00000221801	human	ensembl	69_37n	-1	known	missense	c.823	p.A275T	0.998	pfam_Fibrillarin,pirsf_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202	94	0	0	45	33	42.31	-	-	-	T	40325426	C	T	40325426	3	4	228	1	0	0	0	0	1	0	0	0	5742	797	28	4	150	4	FBL	19	40325426	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	411797	40325426	18803557	1133	15239										
FCGBP	0	genome.wustl.edu	37	chr19	40368715	40368715	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgcagagcccgcacactgcGccatgatagctgctggggag	14	14	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	40368715	40368715	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12633	p.G4211	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	381	0	0	400	71	15.07	-	-	-	A	40368715	G	A	40368715	2	1	228	1	0	0	0	0	0	0	0	1	5824	1074	38	1		1	FCGBP	19	40368715	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	43289	40368715	18760268	1134	15240										
SNRPA	0	genome.wustl.edu	37	chr19	41263309	41263309	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatcctggtatcacggagccTgaagatgaggggccaggcct	14	10	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	41263309	41263309	T	C	SNP	SNRPA	ENST00000243563	human	ensembl	69_37n	1	known	missense	c.146	p.L49P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPA	HGNC	ENSG00000077312	58	0	0	55	30	35.29	-	-	-	C	41263309	T	C	41263309	3	2	228	1	0	0	0	0	1	0	0	0	14948	1580	55	5	152	5	SNRPA	19	41263309	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	894594	41263309	17865674	1135	15241										
CYP2A6	0	genome.wustl.edu	37	chr19	41354538	41354538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgccagtgccccggagggcGtcgatgaggaagcccgcctc	15	16	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	41354538	41354538	G	A	SNP	CYP2A6	ENST00000301141	human	ensembl	69_37n	-1	known	silent	c.474	p.D158	0.004	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974	43	0	0	41	27	37.5	-	-	-	A	41354538	G	A	41354538	2	1	228	1	0	0	0	0	0	0	0	1	4193	1136	40	1		1	CYP2A6	19	41354538	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	91229	41354538	17774445	1136	15242										
ARHGEF1	0	genome.wustl.edu	37	chr19	42392288	42392288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccaggcccctcccggcctgGcctggttcccgtcagcatca	10	20	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	42392288	42392288	G	A	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	missense	c.95	p.G32D	0.985	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	77	0	0	76	50	39.68	-	-	-	A	42392288	G	A	42392288	3	1	228	1	0	0	0	0	1	0	0	0	895	1203	42	4	105	4	ARHGEF1	19	42392288	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1037750	42392288	16736695	1137	15243										
POU2F2	0	genome.wustl.edu	37	chr19	42598028	42598028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggacaacggtaaggtccccGcgcccccttggggtgtgacc	15	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	42598028	42598028	G	A	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.1151	p.A384V	0.974	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	223	0	0	128	101	44.1	-	-	-	A	42598028	G	A	42598028	3	1	228	1	0	0	0	0	1	0	0	0	12345	1087	38	1	300	1	POU2F2	19	42598028	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	205740	42598028	16530955	1138	15244										
CD177	0	genome.wustl.edu	37	chr19	43859874	43859874	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggctgtctggaggggacaacAgaagagatctgccccaaggg	16	9	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	43859874	43859874	A	C	SNP	CD177	ENST00000378009	human	ensembl	69_37n	1	known	silent	c.441	p.T147	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	CD177	HGNC	ENSG00000204936	79	0	0	37	24	39.34	-	-	-	C	43859874	A	C	43859874	2	2	228	1	0	0	0	0	0	0	0	1	3000	175	7	5		5	CD177	19	43859874	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1261846	43859874	15269109	1139	15245										
ZNF45	0	genome.wustl.edu	37	chr19	44418262	44418262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cactcctcacatttatagggTttttcccctgtatggactct	6	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	44418262	44418262	T	G	SNP	ZNF45	ENST00000269973	human	ensembl	69_37n	-1	known	missense	c.1326	p.K442N	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC	ENSG00000124459	243	1	0.41	116	89	43.41	-	-	-	G	44418262	T	G	44418262	3	3	228	1	0	0	0	0	1	0	0	0	18017	1722	60	5	726	5	ZNF45	19	44418262	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	558388	44418262	14710721	1140	15246										
ZNF225	0	genome.wustl.edu	37	chr19	44635764	44635764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtctgaaatcagcacttaatAgtcatcgcatggtccacaca	7	11	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	44635764	44635764	A	G	SNP	ZNF225	ENST00000262894	human	ensembl	69_37n	1	known	missense	c.997	p.S333G	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294	505	0	0	254	160	38.65	-	-	-	G	44635764	A	G	44635764	3	3	228	1	0	0	0	0	1	0	0	0	17875	420	15	5	1011	5	ZNF225	19	44635764	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	217502	44635764	14493219	1141	15247										
RELB	0	genome.wustl.edu	37	chr19	45515438	45515438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acggagcagcccaagcagcgCggcatgcgcttccgctacga	13	15	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	45515438	45515438	C	T	SNP	RELB	ENST00000221452	human	ensembl	69_37n	1	known	silent	c.408	p.R136	0.998	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NF_Rel_dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	RELB	HGNC	ENSG00000104856	9	0	0	8	11	57.89	-	-	-	T	45515438	C	T	45515438	2	4	228	1	0	0	0	0	0	0	0	1	13300	755	27	1		1	RELB	19	45515438	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	879674	45515438	13613545	1142	15248										
KLC3	0	genome.wustl.edu	37	chr19	45851384	45851384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccactgccaccctgacgtgGccaccatgctcaacatcctg	8	18	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	45851384	45851384	G	A	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	1	known	missense	c.787	p.A263T	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	15	0	0	13	9	40.91	-	-	-	A	45851384	G	A	45851384	3	1	228	1	0	0	0	0	1	0	0	0	8388	1203	42	4	759	4	KLC3	19	45851384	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	335946	45851384	13277599	1143	15249										
EML2	0	genome.wustl.edu	37	chr19	46124834	46124834	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcgtcccgtcccgcagggcGcagagcccaaacacgccgcc	12	19	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	46124834	46124834	G	A	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	silent	c.1506	p.C502	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	40	0	0	64	32	33.33	-	-	-	A	46124834	G	A	46124834	2	1	228	1	0	0	0	0	0	0	0	1	5134	1079	38	1		1	EML2	19	46124834	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	273450	46124834	13004149	1144	15250										
RSPH6A	0	genome.wustl.edu	37	chr19	46308076	46308076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcctcctcctcgccctcccGgaattccacctcggccacca	6	22	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	46308076	46308076	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	69_37n	-1	known	missense	c.1087	p.R363W	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941	32	0	0	35	24	40	-	-	-	A	46308076	G	A	46308076	3	1	228	1	0	0	0	0	1	0	0	0	13793	1115	39	1	1082	1	RSPH6A	19	46308076	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	183242	46308076	12820907	1145	15251										
HIF3A	0	genome.wustl.edu	37	chr19	46815864	46815864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacagtggtgtcagggggaCggggcccccagtcggagagt	18	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	46815864	46815864	C	T	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.979	p.R327W	1.000	pfam_PAS_fold_3,pfam_PAS_fold,smart_PAC	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	42	0	0	34	45	56.25	-	-	-	T	46815864	C	T	46815864	3	4	228	1	0	0	0	0	1	0	0	0	7156	527	19	1	1033	1	HIF3A	19	46815864	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	507788	46815864	12313119	1146	15252										
GRIN2D	0	genome.wustl.edu	37	chr19	48945575	48945575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgcctgggagcacctggtgtActggcgcctgcggcactgcc	15	15	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	48945575	48945575	A	G	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	missense	c.2609	p.Y870C	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	62	0	0	27	23	46	-	-	-	G	48945575	A	G	48945575	3	3	228	1	0	0	0	0	1	0	0	0	6833	391	14	5	2651	5	GRIN2D	19	48945575	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2129711	48945575	10183408	1147	15253										
FGF21	0	genome.wustl.edu	37	chr19	49259588	49259588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgccaggcacaccccatccCtgactccagtcctctcctgc	6	21	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	49259588	49259588	C	T	SNP	FGF21	ENST00000222157	human	ensembl	69_37n	1	known	missense	c.95	p.P32L	0.996	superfamily_Cytokine_IL1-like,pirsf_Fibroblast_GF_15/19/21	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,pirsf_Fibroblast_GF_15/19/21,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF21	HGNC	ENSG00000105550	22	0	0	11	6	35.29	-	-	-	T	49259588	C	T	49259588	3	4	228	1	0	0	0	0	1	0	0	0	5896	681	24	4	97	4	FGF21	19	49259588	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	314013	49259588	9869395	1148	15254										
PLEKHA4	0	genome.wustl.edu	37	chr19	49364730	49364730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtagctggggagcaggacGctgcctaggacactctcctc	13	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	49364730	49364730	G	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	silent	c.294	p.S98	0.982	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	54	0	0	62	38	38	-	-	-	A	49364730	G	A	49364730	2	1	228	1	0	0	0	0	0	0	0	1	12132	1078	38	1		1	PLEKHA4	19	49364730	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	105142	49364730	9764253	1149	15255										
C19orf73	0	genome.wustl.edu	37	chr19	49622186	49622186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcgcaggggtgcagaatgagGtgccctcgcccaccgggcgc	17	14	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	49622186	49622186	G	A	SNP	C19orf73	ENST00000408991	human	ensembl	69_37n	-1	known	missense	c.94	p.P32S	0.964	NULL	NULL	-	no_errors	C19orf73	HGNC	ENSG00000221916	55	0	0	39	33	45.83	-	-	-	A	49622186	G	A	49622186	3	1	228	1	0	0	0	0	1	0	0	0	1967	1261	44	4	299	4	C19orf73	19	49622186	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	257456	49622186	9506797	1150	15256										
KLK2	0	genome.wustl.edu	37	chr19	51380015	51380015	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcatcgaaccagaggagtGtacgcctgggccagatggtg	15	10	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	51380015	51380015	G	A	SNP	KLK2	ENST00000325321	human	ensembl	69_37n	1	known	splice_site	c.493+1	e3+1	0.000	-	-	-	no_errors	KLK2	HGNC	ENSG00000167751	58	0	0	40	29	42.03	-	-	-	A	51380015	G	A	51380015	5	1	228	1	0	0	0	0	0	0	1	0	8457	1391	48	4	504	4	KLK2	19	51380015	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1757829	51380015	7748968	1151	15257										
ETFB	0	genome.wustl.edu	37	chr19	51850231	51850231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacagctggcagcttcaggcGcagggtctccaggcccccat	12	16	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	51850231	51850231	G	A	SNP	ETFB	ENST00000354232	human	ensembl	69_37n	-1	known	missense	c.793	p.R265C	1.000	pfam_ETF_a/b_N,smart_ETF_a/b_N	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379	12	0	0	6	5	45.45	-	-	-	A	51850231	G	A	51850231	3	1	228	1	0	0	0	0	1	0	0	0	5307	1087	38	1	255	1	ETFB	19	51850231	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	470216	51850231	7278752	1152	15258										
ZNF614	0	genome.wustl.edu	37	chr19	52519172	52519172	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacccatttctcttgtgtgcAttttcttatgtttgacaagg	7	8	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	52519172	52519172	A	G	SNP	ZNF614	ENST00000270649	human	ensembl	69_37n	-1	known	missense	c.1679	p.M560T	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556	258	1	0.38	105	66	38.15	-	-	-	G	52519172	A	G	52519172	3	3	228	1	0	0	0	0	1	0	0	0	18135	217	8	5	82	5	ZNF614	19	52519172	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	668941	52519172	6609811	1153	15259										
ZNF766	0	genome.wustl.edu	37	chr19	52794079	52794079	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattcaagcctcaccacccaTctgttaatccacactggaga	5	15	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	52794079	52794079	T	C	SNP	ZNF766	ENST00000359102	human	ensembl	69_37n	1	known	silent	c.1080	p.H360	0.240	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF766	HGNC	ENSG00000196214	84	0	0	47	30	38.46	-	-	-	C	52794079	T	C	52794079	2	2	228	1	0	0	0	0	0	0	0	1	18234	1432	50	5		5	ZNF766	19	52794079	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	274907	52794079	6334904	1154	15260										
ZNF600	0	genome.wustl.edu	37	chr19	53269304	53269304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagtctacgatggtgaacaaGggatggcttgtgactgaagg	15	5	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	53269304	53269304	G	T	SNP	ZNF600	ENST00000338230	human	ensembl	69_37n	-1	known	missense	c.1705	p.L569I	0.025	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190	1005	0	0	538	343	38.89	-	-	-	T	53269304	G	T	53269304	3	4	228	1	0	0	0	0	1	0	0	0	18126	1000	35	4	467	4	ZNF600	19	53269304	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	475225	53269304	5859679	1155	15261										
ZNF677	0	genome.wustl.edu	37	chr19	53741168	53741168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggttcgaacttttgctaaaaGcctttccacagtcattacac	6	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	53741168	53741168	G	A	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	missense	c.812	p.A271V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	153	0	0	86	77	47.24	-	-	-	A	53741168	G	A	53741168	3	1	228	1	0	0	0	0	1	0	0	0	18180	971	34	4	946	4	ZNF677	19	53741168	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	471864	53741168	5387815	1156	15262										
LENG8	0	genome.wustl.edu	37	chr19	54967264	54967264	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcgggggtgccccgtcccagCgagggacgcccggggctggg	21	14	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	54967264	54967264	C	T	SNP	LENG8	ENST00000326764	human	ensembl	69_37n	1	known	nonsense	c.1144	p.R382*	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615	30	0	0	25	18	41.86	-	-	-	T	54967264	C	T	54967264	4	4	228	1	0	0	0	0	0	1	0	0	8778	760	27	1	1174	1	LENG8	19	54967264	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1226096	54967264	4161719	1157	15263										
LILRA1	0	genome.wustl.edu	37	chr19	55107147	55107147	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagtgcagccaggtcctatAgtggcccctggggagagcct	14	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55107147	55107147	A	C	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	silent	c.705	p.I235	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	87	0	0	49	11	18.33	-	-	-	C	55107147	A	C	55107147	2	2	228	1	0	0	0	0	0	0	0	1	8839	410	15	5		5	LILRA1	19	55107147	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	139883	55107147	4021836	1158	15264										
LILRA1	0	genome.wustl.edu	37	chr19	55107401	55107401	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctggacatcctgatcgcagGtgaggagcccagcgggttca	14	12	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55107401	55107401	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	splice_site	c.958+1	e5+1	0.000	-	-	-	no_errors	LILRA1	HGNC	ENSG00000104974	41	0	0	13	13	50	-	-	-	A	55107401	G	A	55107401	5	1	228	1	0	0	0	0	0	0	1	0	8839	1275	44	4	977	4	LILRA1	19	55107401	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	254	55107401	4021582	1159	15265										
LILRA1	0	genome.wustl.edu	37	chr19	55112190	55112190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acccccaggattacacagtgGagaatctcatccgcatgggc	10	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55112190	55112190	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.1378	p.E460K	0.027	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	140	0	0	99	72	42.11	-	-	-	A	55112190	G	A	55112190	3	1	228	1	0	0	0	0	1	0	0	0	8839	1175	41	2	1412	2	LILRA1	19	55112190	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4789	55112190	4016793	1160	15266										
LILRB1	0	genome.wustl.edu	37	chr19	55148375	55148375	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccatggagtctggaatgcAtgggagctgcccccccagtg	13	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55148375	55148375	A	G	SNP	LILRB1	ENST00000462628	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	39	0	0	23	19	45.24	-	-	-	G	55148375	A	G	55148375	1	3	228	0	1	0	0	0	0	0	0	0	8845	232	8	5		5	LILRB1	19	55148375	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	36185	55148375	3980608	1161	15267										
KIR2DL4	0	genome.wustl.edu	37	chr19	55317420	55317420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttccaggtctatatgagaaaCcttcgcttacagcccggccg	9	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55317420	55317420	C	T	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	missense	c.370	p.P124S	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	33	0	0	4	25	86.21	-	-	-	T	55317420	C	T	55317420	3	4	228	1	0	0	0	0	1	0	0	0	8371	507	18	4	390	4	KIR2DL4	19	55317420	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	169045	55317420	3811563	1162	15268										
NLRP7	0	genome.wustl.edu	37	chr19	55450979	55450979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccgcagctgtgcgccctgcGggaaccggctgcagaggaaa	15	14	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	55450979	55450979	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1292	p.P431L	0.007	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	21	0	0	22	14	38.89	-	-	-	A	55450979	G	A	55450979	3	1	228	1	0	0	0	0	1	0	0	0	10554	1116	39	1	1937	1	NLRP7	19	55450979	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	133559	55450979	3678004	1163	15269										
PEG3	0	genome.wustl.edu	37	chr19	57328153	57328153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttgccatatattttctgaaGctcactaaaggtggggctag	10	7	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	57328153	57328153	G	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1657	p.L553F	0.998	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	391	1	0.26	200	143	41.69	-	-	-	A	57328153	G	A	57328153	3	1	228	1	0	0	0	0	1	0	0	0	11793	971	34	4	3113	4	PEG3	19	57328153	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1877174	57328153	1800830	1164	15270										
ZIM3	0	genome.wustl.edu	37	chr19	57648334	57648334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcgggtttggtggtttcccCttgtcctgtgatggaagata	13	7	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	19	57648334	57648334	C	T	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.148	p.G50R	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	116	0	0	103	62	37.58	-	-	-	T	57648334	C	T	57648334	3	4	228	1	0	0	0	0	1	0	0	0	17781	681	24	4	1278	4	ZIM3	19	57648334	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	320181	57648334	1480649	1165	15271										
SDCBP2	0	genome.wustl.edu	37	chr20	1293001	1293001	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttcagcccgataacattctGcccgtccacctcacacacgt	5	18	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	1293001	1293001	G	A	SNP	SDCBP2	ENST00000339987	human	ensembl	69_37n	-1	known	nonsense	c.712	p.Q238*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775	12	0	0	9	4	30.77	-	-	-	A	1293001	G	A	1293001	4	1	228	1	0	0	0	0	0	1	0	0	14044	1328	46	4	178	4	SDCBP2	20	1293001	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09		1293001	61732519	1166	15272										
ATRN	0	genome.wustl.edu	37	chr20	3543051	3543051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctacaaggctttcagtgccAataagtaccggcttgcagat	10	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	3543051	3543051	A	G	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.1576	p.N526D	1.000	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	212	0	0	106	81	43.32	-	-	-	G	3543051	A	G	3543051	3	3	228	1	0	0	0	0	1	0	0	0	1210	130	5	5	1610	5	ATRN	20	3543051	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2250050	3543051	59482469	1167	15273										
SLC23A2	0	genome.wustl.edu	37	chr20	4880229	4880229	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaacgttgtctgtagcaaagTagtgattcccacacagaaga	9	8	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	4880229	4880229	T	C	SNP	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	missense	c.454	p.T152A	0.996	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	425	0	0	271	216	44.35	-	-	-	C	4880229	T	C	4880229	3	2	228	1	0	0	0	0	1	0	0	0	14552	1638	57	5	1546	5	SLC23A2	20	4880229	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1337178	4880229	58145291	1168	15274										
PLCB4	0	genome.wustl.edu	37	chr20	9353042	9353043	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagatatagaagatcttttcINSaaaaaaatgtaagttccact							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	9353042	9353043	-	A	INS	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	frame_shift_ins	c.678_679	p.I228fs	1.000:1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	97	0	0	61	31	33.7	-	-	-	A	9353043	-	A	9353042	7	5	228	1	0	1	1	0	0	0	0	0	12104	825	29	0	708	0	PLCB4	20	9353042	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	4472813	9353042	53672478	1169	15275										
PLCB4	0	genome.wustl.edu	37	chr20	9457374	9457374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtacaaacagcttttgaaatCctgtcatgcagtgtcccaaa	7	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	9457374	9457374	C	A	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.3470	p.S1157Y	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	191	0	0	99	60	37.74	-	-	-	A	9457374	C	A	9457374	3	1	228	1	0	0	0	0	1	0	0	0	12104	855	30	2	3648	2	PLCB4	20	9457374	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	104332	9457374	53568146	1170	15276										
SLC24A3	0	genome.wustl.edu	37	chr20	19679282	19679282	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atcctgattggcctcggtctCccctgggctctgcagaccct							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	19679282	19679282	C	-	DEL	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	frame_shift_del	c.1677	p.W561fs	0.886	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	22	0	0	11	4	26.67	-	-	-	-	19679282	C	-	19679282	7	5	228	1	0	1	0	1	0	0	0	0	14556	842	30	0	1735	0	SLC24A3	20	19679282	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	10221908	19679282	43346238	1171	15277										
RIN2	0	genome.wustl.edu	37	chr20	19981587	19981587	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaccacctcctagaagacaGgcgggacttcccagtggtgc	11	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	19981587	19981587	G	T	SNP	RIN2	ENST00000484638	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIN2	HGNC	ENSG00000132669	51	0	0	37	28	43.08	-	-	-	T	19981587	G	T	19981587	1	4	228	0	1	0	0	0	0	0	0	0	13458	1015	35	4		4	RIN2	20	19981587	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	302305	19981587	43043933	1172	15278										
NAA20	0	genome.wustl.edu	37	chr20	20013188	20013188	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggatctctttgtaagagtAtctaaccaagttgcagttaa	9	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	20013188	20013188	A	G	SNP	NAA20	ENST00000334982	human	ensembl	69_37n	1	known	silent	c.342	p.V114	0.592	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418	250	0	0	101	66	39.52	-	-	-	G	20013188	A	G	20013188	2	3	228	1	0	0	0	0	0	0	0	1	10192	436	16	5		5	NAA20	20	20013188	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	31601	20013188	43012332	1173	15279										
CST1	0	genome.wustl.edu	37	chr20	23729700	23729700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcacaggtgtccaagttggGctgggacttggtacatatgg	16	7	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	23729700	23729700	G	A	SNP	CST1	ENST00000304749	human	ensembl	69_37n	-1	known	missense	c.295	p.P99S	0.649	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST1	HGNC	ENSG00000170373	194	0	0	94	63	40.13	-	-	-	A	23729700	G	A	23729700	3	1	228	1	0	0	0	0	1	0	0	0	4002	1203	42	4	138	4	CST1	20	23729700	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3716512	23729700	39295820	1174	15280										
ENTPD6	0	genome.wustl.edu	37	chr20	25203408	25203408	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcaagtcccctgggaggggCcccaagcagctgtgaggcct	14	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	25203408	25203408	C	T	SNP	ENTPD6	ENST00000485936	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ENTPD6	HGNC	ENSG00000197586	19	0	0	12	9	42.86	-	-	-	T	25203408	C	T	25203408	1	4	228	0	1	0	0	0	0	0	0	0	5180	754	26	4		4	ENTPD6	20	25203408	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1473708	25203408	37822112	1175	15281										
DEFB123	0	genome.wustl.edu	37	chr20	30037881	30037881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggcaaatgccgttacagatgCtccaagaaggaaagagtcta	11	8	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	30037881	30037881	C	T	SNP	DEFB123	ENST00000376309	human	ensembl	69_37n	1	known	silent	c.108	p.C36	0.007	NULL	NULL	-	no_errors	DEFB123	HGNC	ENSG00000180424	158	0	0	150	67	30.88	-	-	-	T	30037881	C	T	30037881	2	4	228	1	0	0	0	0	0	0	0	1	4444	805	28	4		4	DEFB123	20	30037881	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	4834473	30037881	32987639	1176	15282										
MYLK2	0	genome.wustl.edu	37	chr20	30414453	30414453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcatgaaccagctgaaccacCgcaatctgatccagctgtat	7	13	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	30414453	30414453	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	missense	c.1018	p.R340C	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	53	0	0	51	23	31.08	-	-	-	T	30414453	C	T	30414453	3	4	228	1	0	0	0	0	1	0	0	0	10129	652	23	1	1040	1	MYLK2	20	30414453	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	376572	30414453	32611067	1177	15283										
HCK	0	genome.wustl.edu	37	chr20	30659555	30659555	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcccacactgtcctgtgtaCgtgccggatcccacatccac	8	17	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	30659555	30659555	C	T	SNP	HCK	ENST00000375852	human	ensembl	69_37n	1	known	silent	c.153	p.Y51	0.165	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	HCK	HGNC	ENSG00000101336	34	0	0	44	25	36.23	-	-	-	T	30659555	C	T	30659555	2	4	228	1	0	0	0	0	0	0	0	1	7045	547	19	1		1	HCK	20	30659555	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	245102	30659555	32365965	1178	15284										
RBM12	0	genome.wustl.edu	37	chr20	34242344	34242344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actgacatacagatcatcagGgttgatggggagtggcttca	13	7	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	34242344	34242344	G	T	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	missense	c.901	p.P301T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	134	0	0	91	54	37.24	-	-	-	T	34242344	G	T	34242344	3	4	228	1	0	0	0	0	1	0	0	0	13196	1232	43	4	1901	4	RBM12	20	34242344	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3582789	34242344	28783176	1179	15285										
CHD6	0	genome.wustl.edu	37	chr20	40126084	40126084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatcgcttgatcttctgtgcGatgcgaggatccttttcgag	11	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	40126084	40126084	G	A	SNP	CHD6	ENST00000440697	human	ensembl	69_37n	-1	known	missense	c.140	p.S47L	0.995	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,pfscan_Chromo_domain/shadow	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHD6	HGNC	ENSG00000124177	187	0	0	87	63	42	-	-	-	A	40126084	G	A	40126084	3	1	228	1	0	0	0	0	1	0	0	0	3358	1048	37	1	7235	1	CHD6	20	40126084	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5883740	40126084	22899436	1180	15286										
PTPRT	0	genome.wustl.edu	37	chr20	40944439	40944439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaggagggttccagtagccaTtgtatgtcttattgtcaccc	11	9	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	40944439	40944439	T	C	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.2063	p.N688S	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	233	1	0.43	163	100	38.02	-	-	-	C	40944439	T	C	40944439	3	2	228	1	0	0	0	0	1	0	0	0	12895	1493	52	5	2403	5	PTPRT	20	40944439	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	818355	40944439	22081081	1181	15287										
SGK2	0	genome.wustl.edu	37	chr20	42208629	42208629	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagcttgagattaagaaccaTgtattcttcagccccataaa	6	10	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	42208629	42208629	T	C	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	silent	c.1047	p.H349	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	159	0	0	110	71	39.23	-	-	-	C	42208629	T	C	42208629	2	2	228	1	0	0	0	0	0	0	0	1	14297	1461	51	5		5	SGK2	20	42208629	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1264190	42208629	20816891	1182	15288										
FITM2	0	genome.wustl.edu	37	chr20	42935516	42935516	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtgtggaggcagtggcttcGgtccgtcttcacctcatgca	14	11	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	42935516	42935516	G	A	SNP	FITM2	ENST00000396825	human	ensembl	69_37n	-1	known	nonsense	c.538	p.R180*	0.010	pfam_FIT	pfam_FIT	-	no_errors	FITM2	HGNC	ENSG00000197296	61	0	0	36	23	38.98	-	-	-	A	42935516	G	A	42935516	4	1	228	1	0	0	0	0	0	1	0	0	5945	1124	39	1	254	1	FITM2	20	42935516	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	726887	42935516	20090004	1183	15289										
PABPC1L	0	genome.wustl.edu	37	chr20	43550280	43550280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtgagcgggcggctgctgTacgcgggccgggcccaaaag	19	11	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	43550280	43550280	T	C	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	missense	c.784	p.Y262H	0.994	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	66	0	0	48	15	23.81	-	-	-	C	43550280	T	C	43550280	3	2	228	1	0	0	0	0	1	0	0	0	11437	1638	57	5	806	5	PABPC1L	20	43550280	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	614764	43550280	19475240	1184	15290										
SDC4	0	genome.wustl.edu	37	chr20	43964440	43964440	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acccagatctccagagccagAcagctcaaagtcatcagatt	7	13	4	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	43964440	43964440	A	T	SNP	SDC4	ENST00000372733	human	ensembl	69_37n	-1	known	missense	c.181	p.S61T	1.000	NULL	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC4	HGNC	ENSG00000124145	58	0	0	42	18	30	-	-	-	T	43964440	A	T	43964440	3	4	228	1	0	0	0	0	1	0	0	0	14042	275	10	5	431	5	SDC4	20	43964440	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	414160	43964440	19061080	1185	15291										
ELMO2	0	genome.wustl.edu	37	chr20	45014804	45014804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtcccacggtgatttcctcGgctatcttctggtacagact	9	12	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	45014804	45014804	G	A	SNP	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	silent	c.636	p.A212	0.002	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	220	0	0	155	122	44.04	-	-	-	A	45014804	G	A	45014804	2	1	228	1	0	0	0	0	0	0	0	1	5103	1103	39	1		1	ELMO2	20	45014804	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1050364	45014804	18010716	1186	15292										
PREX1	0	genome.wustl.edu	37	chr20	47269206	47269206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgactggctcgtgcttcctgGgcatcctcatgggtgtggta	14	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	47269206	47269206	G	A	SNP	PREX1	ENST00000482556	human	ensembl	69_37n	-1	known	missense	c.350	p.P117L	0.967	NULL	superfamily_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PREX1	HGNC	ENSG00000124126	87	0	0	65	28	30.11	-	-	-	A	47269206	G	A	47269206	3	1	228	1	0	0	0	0	1	0	0	0	12557	1219	43	4	2674	4	PREX1	20	47269206	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2254402	47269206	15756314	1187	15293										
ZNFX1	0	genome.wustl.edu	37	chr20	47887220	47887220	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggtctgacgaaatcttctcGcaggagccggaagtgggtat	14	8	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	47887220	47887220	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	nonsense	c.1129	p.R377*	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	148	0	0	92	62	40	-	-	-	A	47887220	G	A	47887220	4	1	228	1	0	0	0	0	0	1	0	0	18298	1095	38	1	4675	1	ZNFX1	20	47887220	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	618014	47887220	15138300	1188	15294										
KCNB1	0	genome.wustl.edu	37	chr20	47990236	47990236	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgccagcccacttctggggCtgtgctgcccccagtcttgc	11	18	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	47990236	47990236	C	A	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.1861	p.A621S	0.034	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	62	0	0	47	31	39.74	-	-	-	A	47990236	C	A	47990236	3	1	228	1	0	0	0	0	1	0	0	0	8066	797	28	4	719	4	KCNB1	20	47990236	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	103016	47990236	15035284	1189	15295										
ADNP	0	genome.wustl.edu	37	chr20	49508633	49508633	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaaactgtctgaggaactgTcatcttccttcccaaggttg	8	11	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	49508633	49508633	T	C	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.2618	p.D873G	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	279	0	0	119	110	48.03	-	-	-	C	49508633	T	C	49508633	3	2	228	1	0	0	0	0	1	0	0	0	323	1667	58	5	694	5	ADNP	20	49508633	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1518397	49508633	13516887	1190	15296										
GNAS	0	genome.wustl.edu	37	chr20	57428757	57428757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggagcccggagccttcagtgGtgccagaccaggcctgggag	17	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	57428757	57428757	G	A	SNP	GNAS	ENST00000371100	human	ensembl	69_37n	1	putative	missense	c.437	p.G146D	0.004	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	16	0	0	13	11	45.83	-	-	-	A	57428757	G	A	57428757	3	1	228	1	0	0	0	0	1	0	0	0	6562	1261	44	4	1181	4	GNAS	20	57428757	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7920124	57428757	5596763	1191	15297										
ZNF831	0	genome.wustl.edu	37	chr20	57781961	57781961	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgcttctctcttctacaggTacaaagggaatttcttgcag	8	9	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	57781961	57781961	T	C	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	missense	c.3877	p.Y1293H	0.788	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	156	0	0	119	85	41.67	-	-	-	C	57781961	T	C	57781961	3	2	228	1	0	0	0	0	1	0	0	0	18278	1652	57	5	3887	5	ZNF831	20	57781961	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	353204	57781961	5243559	1192	15298										
CABLES2	0	genome.wustl.edu	37	chr20	60969219	60969219	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagaggctcttaccttcccGtctgctcctagctccacacc	7	17	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	20	60969219	60969219	G	A	SNP	CABLES2	ENST00000279101	human	ensembl	69_37n	-1	known	silent	c.708	p.D236	0.969	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES2	HGNC	ENSG00000149679	16	0	0	15	9	37.5	-	-	-	A	60969219	G	A	60969219	2	1	228	1	0	0	0	0	0	0	0	1	2555	1136	40	1		1	CABLES2	20	60969219	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3187258	60969219	2056301	1193	15299										
USP25	0	genome.wustl.edu	37	chr21	17150335	17150335	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggaataactgatgaggaacaAgccattagcaggtaaaaaca	10	6	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	17150335	17150335	A	T	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.381	p.Q127H	1.000	pfam_Ubiquitin-int_motif,superfamily_UBA-like	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	119	0	0	56	35	38.46	-	-	-	T	17150335	A	T	17150335	3	4	228	1	0	0	0	0	1	0	0	0	17153	69	3	5	395	5	USP25	21	17150335	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09		17150335	30979560	1194	15300										
TMPRSS15	0	genome.wustl.edu	37	chr21	19726084	19726084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtatatgttgcattaaagCcaacataatcactttcatca	4	9	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	19726084	19726084	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.977	p.G326D	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	131	0	0	63	26	29.21	-	-	-	T	19726084	C	T	19726084	3	4	228	1	0	0	0	0	1	0	0	0	16341	739	26	4	2150	4	TMPRSS15	21	19726084	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2575749	19726084	28403811	1195	15301										
JAM2	0	genome.wustl.edu	37	chr21	27084545	27084545	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tacctaagatatatgttcatGttcttgctgagaaaatgtat	7	5	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	27084545	27084545	G	A	SNP	JAM2	ENST00000312957	human	ensembl	69_37n	1	known	splice_site	c.821+1	e8+1	0.000	-	-	-	no_errors	JAM2	HGNC	ENSG00000154721	61	0	0	29	15	34.09	-	-	-	A	27084545	G	A	27084545	5	1	228	1	0	0	0	0	0	0	1	0	7997	1392	48	4		4	JAM2	21	27084545	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	7358461	27084545	21045350	1196	15302										
APP	0	genome.wustl.edu	37	chr21	27423445	27423445	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caaactctacccctcggaacTtgtcaattccgcagggcagc	8	15	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	27423445	27423445	T	C	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.533	p.K178R	1.000	pfam_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	143	0	0	61	51	45.54	-	-	-	C	27423445	T	C	27423445	3	2	228	1	0	0	0	0	1	0	0	0	817	1609	56	5	1835	5	APP	21	27423445	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	338900	27423445	20706450	1197	15303										
ADAMTS5	0	genome.wustl.edu	37	chr21	28315838	28315838	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtctcttcacagaatttggaAtcgtcatgggagaggccaag	12	8	3	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	28315838	28315838	A	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1266	p.D422E	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	79	0	0	47	23	32.86	-	-	-	T	28315838	A	T	28315838	3	4	228	1	0	0	0	0	1	0	0	0	269	98	4	5	1550	5	ADAMTS5	21	28315838	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	892393	28315838	19814057	1198	15304										
GRIK1	0	genome.wustl.edu	37	chr21	30971250	30971250	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tatgcccagtcaagccatccCaccgggcctgtggacaagaa	10	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	30971250	30971250	C	A	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.1112	p.W371L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	234	0	0	121	78	39.2	-	-	-	A	30971250	C	A	30971250	3	1	228	1	0	0	0	0	1	0	0	0	6824	595	21	4	1850	4	GRIK1	21	30971250	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	2655412	30971250	17158645	1199	15305										
KRTAP6-3	0	genome.wustl.edu	37	chr21	31964878	31964878	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtggttatggcggctgtggCtatgggtgctgtggctacgg	19	6	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	31964878	31964878	C	T	SNP	KRTAP6-3	ENST00000391624	human	ensembl	69_37n	1	known	silent	c.93	p.G31	0.962	NULL	NULL	-	no_errors	KRTAP6-3	HGNC	ENSG00000212938	70	0	0	39	34	43.59	-	-	-	T	31964878	C	T	31964878	2	4	228	1	0	0	0	0	0	0	0	1	8625	784	28	4		4	KRTAP6-3	21	31964878	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	993628	31964878	16165017	1200	15306										
ATP5O	0	genome.wustl.edu	37	chr21	35284669	35284669	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagaataaagagctgtggcaTagcgaccttcaataccgtat	9	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	35284669	35284669	T	C	SNP	ATP5O	ENST00000290299	human	ensembl	69_37n	-1	known	missense	c.122	p.Y41C	1.000	pfam_ATPase_F1-cplx_OSCP/dsu,superfamily_ATPase_OSCP/delta_N,prints_ATPase_F1-cplx_OSCP/dsu,tigrfam_ATPase_F1-cplx_OSCP/dsu	pfam_ATPase_F1-cplx_OSCP/dsu,superfamily_ATPase_OSCP/delta_N,prints_ATPase_F1-cplx_OSCP/dsu,tigrfam_ATPase_F1-cplx_OSCP/dsu	-	no_errors	ATP5O	HGNC	ENSG00000241837	136	0	0	79	31	28.18	-	-	-	C	35284669	T	C	35284669	3	2	228	1	0	0	0	0	1	0	0	0	1166	1406	49	5	539	5	ATP5O	21	35284669	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	3319791	35284669	12845226	1201	15307										
RUNX1	0	genome.wustl.edu	37	chr21	36206781	36206781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacgagggttgggcgtggggGctgggtggtgtgggctgacc	23	7	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	36206781	36206781	G	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.731	p.A244V	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	75	0	0	40	23	36.51	-	-	-	A	36206781	G	A	36206781	3	1	228	1	0	0	0	0	1	0	0	0	13832	1203	42	4	756	4	RUNX1	21	36206781	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	922112	36206781	11923114	1202	15308										
SLC37A1	0	genome.wustl.edu	37	chr21	43959660	43959660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgccgattaggtattaccTaactttcgggatgctcgcca	9	12	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	43959660	43959660	T	C	SNP	SLC37A1	ENST00000352133	human	ensembl	69_37n	1	known	missense	c.389	p.L130P	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190	119	0	0	40	34	45.95	-	-	-	C	43959660	T	C	43959660	3	2	228	1	0	0	0	0	1	0	0	0	14686	1522	53	5	407	5	SLC37A1	21	43959660	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	7752879	43959660	4170235	1203	15309										
PDE9A	0	genome.wustl.edu	37	chr21	44195538	44195538	+	RNA	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	accattttgttcactgatacAaaaaaaaaaaaaggaattca							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	44195538	44195538	A	-	DEL	PDE9A	ENST00000460989	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191	17	0	0	8	11	47.83	-	-	-	-	44195538	A	-	44195538	6	5	228	0	1	1	0	1	0	0	0	0	11728	145	5	0		0	PDE9A	21	44195538	RNA	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	235878	44195538	3934357	1204	15310										
KRTAP10-12	0	genome.wustl.edu	37	chr21	46117591	46117591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgcccgtctgctgcaagCccatctgctgtgtgcctgtc	12	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	46117591	46117591	C	T	SNP	KRTAP10-12	ENST00000400365	human	ensembl	69_37n	1	known	missense	c.475	p.P159S	0.479	NULL	NULL	-	no_errors	KRTAP10-12	HGNC	ENSG00000189169	412	1	0.24	260	202	43.44	-	-	-	T	46117591	C	T	46117591	3	4	228	1	0	0	0	0	1	0	0	0	8561	739	26	4	477	4	KRTAP10-12	21	46117591	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1922053	46117591	2012304	1205	15311										
COL6A2	0	genome.wustl.edu	37	chr21	47532002	47532002	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacatgaagcagttcgtgccGcagttcatcagccagctgca	10	13	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	47532002	47532002	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	silent	c.225	p.P75	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	13	0	0	13	16	55.17	-	-	-	A	47532002	G	A	47532002	2	1	228	1	0	0	0	0	0	0	0	1	3730	1074	38	1		1	COL6A2	21	47532002	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1414411	47532002	597893	1206	15312										
PCNT	0	genome.wustl.edu	37	chr21	47808749	47808749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaggagccggatcggggagcGcgtggggctctgcctggatg	21	9	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	47808749	47808749	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.3557	p.R1186H	0.874	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	20	0	0	11	8	42.11	-	-	-	A	47808749	G	A	47808749	3	1	228	1	0	0	0	0	1	0	0	0	11663	1087	38	1	3627	1	PCNT	21	47808749	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	276747	47808749	321146	1207	15313										
PCNT	0	genome.wustl.edu	37	chr21	47845792	47845792	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agccaccagatcctggcgctGtcagaaggccttgcaccccc	10	17	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	21	47845792	47845792	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	silent	c.7227	p.L2409	0.945	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	29	0	0	29	9	23.68	-	-	-	A	47845792	G	A	47845792	2	1	228	1	0	0	0	0	0	0	0	1	11663	1364	48	4		4	PCNT	21	47845792	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	37043	47845792	284103	1208	15314										
OR11H1	0	genome.wustl.edu	37	chr22	16449039	16449039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacagccaaatgagacccacAggtagagaaggccttatgtc	10	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	16449039	16449039	A	G	SNP	OR11H1	ENST00000252835	human	ensembl	69_37n	-1	known	missense	c.766	p.C256R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538	353	0	0	298	207	40.99	-	-	-	G	16449039	A	G	16449039	3	3	228	1	0	0	0	0	1	0	0	0	10999	188	7	5	216	5	OR11H1	22	16449039	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09		16449039	34855527	1209	15315										
SLC25A1	0	genome.wustl.edu	37	chr22	19163948	19163950	+	In_Frame_Del	DEL	CTT	CTT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actcacgccttgagcccctcCttcttcaggatctgcaagcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	19163948	19163950	CTT	-	DEL	SLC25A1	ENST00000215882	human	ensembl	69_37n	-1	known	in_frame_del	c.807_805	p.K269in_frame_del	0.946:1.000:1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075	30	0	0	19	10	34.48	-	-	-	-	19163950	CTT	-	19163948	7	5	228	1	0	1	0	1	0	0	0	0	14560	680	24	0	136	0	SLC25A1	22	19163948	In_Frame_Del	DEL	CTT	TCGA-A8-A09Z-01A-11W-A019-09	2714909	19163948	32140618	1210	15316										
CLTCL1	0	genome.wustl.edu	37	chr22	19223299	19223299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattgtgtcagcactaatacGgttcatgcagatgcacacgc	9	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	19223299	19223299	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	69_37n	-1	known	missense	c.889	p.R297C	1.000	pfam_Clathrin_H-chain_propeller_rpt,superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	220	0	0	106	86	44.79	-	-	-	A	19223299	G	A	19223299	3	1	228	1	0	0	0	0	1	0	0	0	3597	1116	39	1	4141	1	CLTCL1	22	19223299	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	59351	19223299	32081267	1211	15317										
TRMT2A	0	genome.wustl.edu	37	chr22	20100129	20100129	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttcttgtagggtgttatctGggggtcctggtgtgggttga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	20100129	20100129	G	-	DEL	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	frame_shift_del	c.1835	p.P612fs	0.000	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	30	0	0	7	3	27.27	-	-	-	-	20100129	G	-	20100129	7	5	228	1	0	1	0	1	0	0	0	0	16661	1348	47	0	46	0	TRMT2A	22	20100129	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	876830	20100129	31204437	1212	15318										
PPM1F	0	genome.wustl.edu	37	chr22	22277775	22277775	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggcaagcagcaggtagtccTcggagcccgtcagcgcccgg	15	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	22277775	22277775	T	C	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.1055	p.E352G	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	24	0	0	11	5	29.41	-	-	-	C	22277775	T	C	22277775	3	2	228	1	0	0	0	0	1	0	0	0	12416	1551	54	5	313	5	PPM1F	22	22277775	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	2177646	22277775	29026791	1213	15319										
MMP11	0	genome.wustl.edu	37	chr22	24122654	24122654	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcacctttactgaggtgcaCgagggccgtgctgacatcat	11	12	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	24122654	24122654	C	T	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	1	known	silent	c.447	p.H149	0.192	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	30	0	0	19	7	26.92	-	-	-	T	24122654	C	T	24122654	2	4	228	1	0	0	0	0	0	0	0	1	9721	535	19	1		1	MMP11	22	24122654	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1844879	24122654	27181912	1214	15320										
MYO18B	0	genome.wustl.edu	37	chr22	26422501	26422501	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgtccacagcaagacctcAggagacaagcctgtttctcc	8	13	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	26422501	26422501	A	G	SNP	MYO18B	ENST00000543971	human	ensembl	69_37n	1	novel	missense	c.410	p.Q137R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYO18B	HGNC	ENSG00000133454	113	0	0	91	58	38.93	-	-	-	G	26422501	A	G	26422501	3	3	228	1	0	0	0	0	1	0	0	0	10138	175	7	5	6727	5	MYO18B	22	26422501	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2299847	26422501	24882065	1215	15321										
ASPHD2	0	genome.wustl.edu	37	chr22	26830390	26830390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caatgtttttgggaacgcgtGcatctctgtgctgagccctg	12	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	26830390	26830390	G	A	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	missense	c.809	p.C270Y	1.000	pfam_Asp_Arg_b-Hydrxlase	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	144	0	0	86	50	36.76	-	-	-	A	26830390	G	A	26830390	3	1	228	1	0	0	0	0	1	0	0	0	1059	1319	46	4	811	4	ASPHD2	22	26830390	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	407889	26830390	24474176	1216	15322										
MN1	0	genome.wustl.edu	37	chr22	28193536	28193536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagcgccttttcgtggggcGtcggtgccccgcgcgtctcg	16	14	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	28193536	28193536	G	A	SNP	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	missense	c.2996	p.T999M	0.966	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	26	0	0	18	11	37.93	-	-	-	A	28193536	G	A	28193536	3	1	228	1	0	0	0	0	1	0	0	0	9745	1145	40	1	974	1	MN1	22	28193536	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1363146	28193536	23111030	1217	15323										
ZNRF3	0	genome.wustl.edu	37	chr22	29446501	29446501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggtgaaatacgagggtctgCcctgctgcttctatgaagag	14	8	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	29446501	29446501	C	T	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	missense	c.2332	p.P778S	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	10	0	0	12	6	33.33	-	-	-	T	29446501	C	T	29446501	3	4	228	1	0	0	0	0	1	0	0	0	18306	739	26	4	2058	4	ZNRF3	22	29446501	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1252965	29446501	21858065	1218	15324										
EMID1	0	genome.wustl.edu	37	chr22	29622474	29622474	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gccccagcttcctccctcccCgcaggttgtctcaactgcag	8	19	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	29622474	29622474	C	T	SNP	EMID1	ENST00000484039	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EMID1	HGNC	ENSG00000186998	22	0	0	9	9	50	-	-	-	T	29622474	C	T	29622474	1	4	228	0	1	0	0	0	0	0	0	0	5128	667	23	1		1	EMID1	22	29622474	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	175973	29622474	21682092	1219	15325										
AP1B1	0	genome.wustl.edu	37	chr22	29727513	29727513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagacatcgatgttgttctTcacggccacctaggcacaag	10	11	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	29727513	29727513	T	C	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.2449	p.K817E	1.000	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	112	0	0	56	38	40.43	-	-	-	C	29727513	T	C	29727513	3	2	228	1	0	0	0	0	1	0	0	0	732	1792	62	5	420	5	AP1B1	22	29727513	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	105039	29727513	21577053	1220	15326										
AP1B1	0	genome.wustl.edu	37	chr22	29727890	29727890	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggacctggaggggggtggcGggggccaggccaaagctggg	23	8	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	29727890	29727890	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.2325	p.P775	0.952	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	17	0	0	19	12	38.71	-	-	-	A	29727890	G	A	29727890	2	1	228	1	0	0	0	0	0	0	0	1	732	1103	39	1		1	AP1B1	22	29727890	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	377	29727890	21576676	1221	15327										
ASCC2	0	genome.wustl.edu	37	chr22	30221115	30221116	+	Frame_Shift_Del	DEL	AA	AA	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gacatgcggaggaaggtgagAaaaacacttcgatggaggcg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	30221115	30221116	AA	-	DEL	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	frame_shift_del	c.372_371	p.F124fs	1.000:1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	138	0	0	112	91	44.83	-	-	-	-	30221116	AA	-	30221115	7	5	228	1	0	1	0	1	0	0	0	0	1036	243	9	0	1969	0	ASCC2	22	30221115	Frame_Shift_Del	DEL	AA	TCGA-A8-A09Z-01A-11W-A019-09	493225	30221115	21083451	1222	15328										
SEC14L3	0	genome.wustl.edu	37	chr22	30867944	30867944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ggtctccaactcggccgctcAtggtgctggctggggcttga	15	12	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	30867944	30867944	A	G	SNP	SEC14L3	ENST00000215812	human	ensembl	69_37n	-1	known	missense	c.2	p.M1T	1.000	superfamily_CRAL/TRIO_N_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L3	HGNC	ENSG00000100012	45	0	0	25	39	60.94	-	-	-	G	30867944	A	G	30867944	3	3	228	1	0	0	0	0	1	0	0	0	14071	217	8	5	1248	5	SEC14L3	22	30867944	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	646829	30867944	20436622	1223	15329										
PES1	0	genome.wustl.edu	37	chr22	30985232	30985232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggctttgttccgggtgatgTagttggtggccgagcctcgt	17	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	30985232	30985232	T	C	SNP	PES1	ENST00000354694	human	ensembl	69_37n	-1	known	missense	c.50	p.Y17C	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029	30	0	0	23	10	30.3	-	-	-	C	30985232	T	C	30985232	3	2	228	1	0	0	0	0	1	0	0	0	11806	1638	57	5	1772	5	PES1	22	30985232	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	117288	30985232	20319334	1224	15330										
TIMP3	0	genome.wustl.edu	37	chr22	33255232	33255232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtgtctctggaccgacatGctctccaatttcggttaccc	9	13	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	33255232	33255232	G	A	SNP	TIMP3	ENST00000266085	human	ensembl	69_37n	1	known	missense	c.504	p.M168I	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234	144	0	0	83	54	39.42	-	-	-	A	33255232	G	A	33255232	3	1	228	1	0	0	0	0	1	0	0	0	16014	1319	46	4	522	4	TIMP3	22	33255232	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2270000	33255232	18049334	1225	15331										
LARGE	0	genome.wustl.edu	37	chr22	33828215	33828215	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaggtttccaaggtaccagTcactctggttctccaccaag	8	13	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	33828215	33828215	T	C	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.824	p.D275G	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	118	0	0	107	53	32.92	-	-	-	C	33828215	T	C	33828215	3	2	228	1	0	0	0	0	1	0	0	0	8681	1667	58	5	1482	5	LARGE	22	33828215	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	572983	33828215	17476351	1226	15332										
MCM5	0	genome.wustl.edu	37	chr22	35812638	35812638	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgtcgcctgttaggctgggaTcaccaccaccctgaactccc	9	16	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	35812638	35812638	T	C	SNP	MCM5	ENST00000216122	human	ensembl	69_37n	1	known	missense	c.1421	p.I474T	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_5,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297	44	0	0	45	47	51.09	-	-	-	C	35812638	T	C	35812638	3	2	228	1	0	0	0	0	1	0	0	0	9461	1435	50	5	1463	5	MCM5	22	35812638	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1984423	35812638	15491928	1227	15333										
TMPRSS6	0	genome.wustl.edu	37	chr22	37470731	37470731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagtccattcacagaacagaGgaactctccagggcaggctg	12	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	37470731	37470731	G	T	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	missense	c.1360	p.L454I	1.000	pirsf_Pept_S1A_matriptase-2,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	22	0	0	9	6	40	-	-	-	T	37470731	G	T	37470731	3	4	228	1	0	0	0	0	1	0	0	0	16346	1000	35	4	1076	4	TMPRSS6	22	37470731	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1658093	37470731	13833835	1228	15334										
ELFN2	0	genome.wustl.edu	37	chr22	37771056	37771056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cacaccatcaggctggcgagGctggcaaaggtggcaccgtc	14	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	37771056	37771056	G	A	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	silent	c.519	p.S173	1.000	smart_Leu-rich_rpt_typical-subtyp	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	16	0	0	6	6	50	-	-	-	A	37771056	G	A	37771056	2	1	228	1	0	0	0	0	0	0	0	1	5095	1194	42	4		4	ELFN2	22	37771056	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	300325	37771056	13533510	1229	15335										
GGA1	0	genome.wustl.edu	37	chr22	38026927	38026927	+	Frame_Shift_Del	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagggagaagcagcagccaaCcccccggctcacactccggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	38026927	38026927	C	-	DEL	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	frame_shift_del	c.1349	p.R452fs	0.964	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	15	0	0	15	8	33.33	-	-	-	-	38026927	C	-	38026927	7	5	228	1	0	1	0	1	0	0	0	0	6404	507	18	0	1469	0	GGA1	22	38026927	Frame_Shift_Del	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	255871	38026927	13277639	1230	15336										
POLR2F	0	genome.wustl.edu	37	chr22	38421666	38421666	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggctctttcagcatctcctCccgctgacttctcccgacag	7	17	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	38421666	38421666	C	A	SNP	POLR2F	ENST00000405557	human	ensembl	69_37n	1	putative	missense	c.374	p.S125Y	0.000	NULL	pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2	-	no_errors	POLR2F	HGNC	ENSG00000100142	80	0	0	46	29	38.67	-	-	-	A	38421666	C	A	38421666	3	1	228	1	0	0	0	0	1	0	0	0	12293	870	30	2		2	POLR2F	22	38421666	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	394739	38421666	12882900	1231	15337										
FAM83F	0	genome.wustl.edu	37	chr22	40415274	40415274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtgtacatcatcctggacGaggcaggagtgaagtatttc	12	8	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	40415274	40415274	G	A	SNP	FAM83F	ENST00000333407	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477	74	0	0	42	23	35.38	-	-	-	A	40415274	G	A	40415274	3	1	228	1	0	0	0	0	1	0	0	0	5683	1059	37	1	598	1	FAM83F	22	40415274	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1993608	40415274	10889292	1232	15338										
TNRC6B	0	genome.wustl.edu	37	chr22	40662371	40662371	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttccaactggggaggaggaCgacctgatgaaaagacacct	12	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	40662371	40662371	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	nonsense	c.2137	p.R713*	0.265	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	85	0	0	37	46	55.42	-	-	-	T	40662371	C	T	40662371	4	4	228	1	0	0	0	0	0	1	0	0	16436	528	19	1	2276	1	TNRC6B	22	40662371	Nonsense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	247097	40662371	10642195	1233	15339										
SGSM3	0	genome.wustl.edu	37	chr22	40805717	40805717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctgaaggagggcgtccgggAcatgctggtgaagcaccacc	15	12	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	40805717	40805717	A	G	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	missense	c.2204	p.D735G	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	57	0	0	26	21	44.68	-	-	-	G	40805717	A	G	40805717	3	3	228	1	0	0	0	0	1	0	0	0	14312	275	10	5	2286	5	SGSM3	22	40805717	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	143346	40805717	10498849	1234	15340										
MKL1	0	genome.wustl.edu	37	chr22	40817001	40817001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccctgtcctgcttctggtccGgggggatgtactggtggtac	15	11	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	40817001	40817001	G	A	SNP	MKL1	ENST00000355630	human	ensembl	69_37n	-1	known	missense	c.731	p.P244L	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL1	HGNC	ENSG00000196588	26	0	0	13	18	58.06	-	-	-	A	40817001	G	A	40817001	3	1	228	1	0	0	0	0	1	0	0	0	9672	1116	39	1	2088	1	MKL1	22	40817001	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	11284	40817001	10487565	1235	15341										
L3MBTL2	0	genome.wustl.edu	37	chr22	41613207	41613207	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgtcagctgtttcaagcacGtgagtgccctggagctgagg	14	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	41613207	41613207	G	A	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	splice_site	c.600+1	e5+1	1.000	-	-	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	28	0	0	25	13	34.21	-	-	-	A	41613207	G	A	41613207	5	1	228	1	0	0	0	0	0	0	1	0	8646	1159	40	1	619	1	L3MBTL2	22	41613207	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	796206	41613207	9691359	1236	15342										
PKDREJ	0	genome.wustl.edu	37	chr22	46653020	46653020	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cgtagaagaatctggaatacCtgagggtcttcaaaattgtc	10	7	3	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	46653020	46653020	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.6200	p.R2067M	0.965	pfam_PKD1_2_channel,pfam_Ion_trans_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	60	0	0	19	12	38.71	-	-	-	A	46653020	C	A	46653020	3	1	228	1	0	0	0	0	1	0	0	0	12044	681	24	4	565	4	PKDREJ	22	46653020	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5039813	46653020	4651546	1237	15343										
GTSE1	0	genome.wustl.edu	37	chr22	46722424	46722424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgtgtcagccttgcccacaCccgccagccggcgctgctct	11	18	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	46722424	46722424	C	A	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1597	p.P533T	0.796	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	30	0	0	25	18	41.86	-	-	-	A	46722424	C	A	46722424	3	1	228	1	0	0	0	0	1	0	0	0	6936	507	18	4	1627	4	GTSE1	22	46722424	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	69404	46722424	4582142	1238	15344										
ZBED4	0	genome.wustl.edu	37	chr22	50279757	50279757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caacgccagcatcgggaagaCgctgaacgagggggagcact	15	11	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	50279757	50279757	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.2447	p.T816M	0.978	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	9	0	0	10	4	28.57	-	-	-	T	50279757	C	T	50279757	3	4	228	1	0	0	0	0	1	0	0	0	17616	536	19	1	2449	1	ZBED4	22	50279757	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3557333	50279757	1024809	1239	15345										
TUBGCP6	0	genome.wustl.edu	37	chr22	50659403	50659403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccgtgggtattccaccgtgGcctggtgggagccacatctg	14	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	22	50659403	50659403	G	A	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.3385	p.P1129S	0.989	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	133	0	0	83	56	40.29	-	-	-	A	50659403	G	A	50659403	3	1	228	1	0	0	0	0	1	0	0	0	16867	1203	42	4	2114	4	TUBGCP6	22	50659403	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	379646	50659403	645163	1240	15346										
CSF2RA	0	genome.wustl.edu	37	chrX	1428415	1428415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	catggacatctccgcctccgCgacacgggggaactgttttc	11	14	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	1428415	1428415	C	T	SNP	CSF2RA	ENST00000355432	human	ensembl	69_37n	1	known	missense	c.1067	p.A356V	0.000	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223	328	0	0	347	313	47.42	-	-	-	T	1428415	C	T	1428415	3	4	228	1	0	0	0	0	1	0	0	0	3966	768	27	1	1506	1	CSF2RA	23	1428415	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09		1428415	153842145	1241	15347										
CD99	0	genome.wustl.edu	37	chrX	2641387	2641387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtgatggtggaggcagccacAggaaagaaggggaagagggt	20	4	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	2641387	2641387	A	G	SNP	CD99	ENST00000381192	human	ensembl	69_37n	1	known	missense	c.343	p.R115G	0.000	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	146	0	0	89	55	38.19	-	-	-	G	2641387	A	G	2641387	3	3	228	1	0	0	0	0	1	0	0	0	3079	179	7	5	369	5	CD99	23	2641387	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1212972	2641387	152629173	1242	15348										
XG	0	genome.wustl.edu	37	chrX	2729484	2729484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acaataggagaaattgtttcAggacccatggtaagtttggc	11	6	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	2729484	2729484	A	G	SNP	XG	ENST00000419513	human	ensembl	69_37n	1	known	missense	c.562	p.R188G	0.000	pfam_CD99L2	pfam_CD99L2	-	no_errors	XG	HGNC	ENSG00000124343	79	0	0	39	27	40.91	-	-	-	G	2729484	A	G	2729484	3	3	228	1	0	0	0	0	1	0	0	0	17524	179	7	5	603	5	XG	23	2729484	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	88097	2729484	152541076	1243	15349										
ARSE	0	genome.wustl.edu	37	chrX	2873545	2873545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	atgtgttgggtcagcttcacGccgtcctctgcaaggcggtc	13	12	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	2873545	2873545	G	A	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	silent	c.294	p.G98	0.061	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	41	0	0	28	22	44	-	-	-	A	2873545	G	A	2873545	2	1	228	1	0	0	0	0	0	0	0	1	994	1074	38	1		1	ARSE	23	2873545	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	144061	2873545	152397015	1244	15350										
MXRA5	0	genome.wustl.edu	37	chrX	3242093	3242093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gcctgagtcagatggctccaTggacttgatcctcagccagc	11	13	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	3242093	3242093	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.1633	p.M545V	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	132	0	0	69	55	44.35	-	-	-	C	3242093	T	C	3242093	3	2	228	1	0	0	0	0	1	0	0	0	10075	1464	51	5	6865	5	MXRA5	23	3242093	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	368548	3242093	152028467	1245	15351										
TBL1X	0	genome.wustl.edu	37	chrX	9659627	9659627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgctgtgacagataatcacGcgaagccaatggaaatagat	10	7	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	9659627	9659627	G	A	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	missense	c.625	p.A209T	0.077	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	68	0	0	41	24	36.92	-	-	-	A	9659627	G	A	9659627	3	1	228	1	0	0	0	0	1	0	0	0	15734	1087	38	1	643	1	TBL1X	23	9659627	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	6417534	9659627	145610933	1246	15352										
FRMPD4	0	genome.wustl.edu	37	chrX	12701631	12701631	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagcatttattagtgctgcAaaaaaggcaagattaaagtc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	12701631	12701631	A	-	DEL	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	frame_shift_del	c.498	p.K168fs	0.875	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	150	0	0	77	56	41.48	-	-	-	-	12701631	A	-	12701631	7	5	228	1	0	1	0	1	0	0	0	0	6108	117	5	0	520	0	FRMPD4	23	12701631	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	3042004	12701631	142568929	1247	15353										
FRMPD4	0	genome.wustl.edu	37	chrX	12720093	12720093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtacattgcaaccgttaccaCcaagcaaacgcagaaaatct	6	12	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	12720093	12720093	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.1034	p.T345I	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	206	0	0	125	79	38.54	-	-	-	T	12720093	C	T	12720093	3	4	228	1	0	0	0	0	1	0	0	0	6108	507	18	4	1072	4	FRMPD4	23	12720093	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	18462	12720093	142550467	1248	15354										
FAM9C	0	genome.wustl.edu	37	chrX	13061329	13061329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctcctttgtctctgtaacagGttttctttcctcatgctcat	5	12	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	13061329	13061329	G	A	SNP	FAM9C	ENST00000333995	human	ensembl	69_37n	-1	known	missense	c.100	p.P34S	0.001	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9C	HGNC	ENSG00000187268	388	0	0	187	119	38.89	-	-	-	A	13061329	G	A	13061329	3	1	228	1	0	0	0	0	1	0	0	0	5707	1261	44	4	420	4	FAM9C	23	13061329	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	341236	13061329	142209231	1249	15355										
BMX	0	genome.wustl.edu	37	chrX	15536090	15536090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagtcaatgaagagaaacacAgagttcccaccttcccagac	7	13	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	15536090	15536090	A	G	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.484	p.R162G	0.065	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	338	0	0	163	80	32.92	-	-	-	G	15536090	A	G	15536090	3	3	228	1	0	0	0	0	1	0	0	0	1478	180	7	5	502	5	BMX	23	15536090	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2474761	15536090	139734470	1250	15356										
REPS2	0	genome.wustl.edu	37	chrX	17153383	17153383	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tattttgttttaaatccacaGgatgtactgtattctcagcc	6	8	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	17153383	17153383	G	A	SNP	REPS2	ENST00000357277	human	ensembl	69_37n	1	known	splice_site	c.1663-1	e16-1	1.000	-	-	-	no_errors	REPS2	HGNC	ENSG00000169891	787	0	0	451	309	40.66	-	-	-	A	17153383	G	A	17153383	5	1	228	1	0	0	0	0	0	0	1	0	13312	1014	35	4	1724	4	REPS2	23	17153383	Splice_Site	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1617293	17153383	138117177	1251	15357										
NHS	0	genome.wustl.edu	37	chrX	17745771	17745771	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtctccaagtaagattaggcCgcatacagcaaataaatcag	8	9	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	17745771	17745771	C	A	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.3482	p.P1161Q	0.771	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	797	3	0.38	335	207	38.19	-	-	-	A	17745771	C	A	17745771	3	1	228	1	0	0	0	0	1	0	0	0	10483	652	23	3	3609	3	NHS	23	17745771	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	592388	17745771	137524789	1252	15358										
RAI2	0	genome.wustl.edu	37	chrX	17819461	17819461	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagggtggctggtgggaccaGgggggacaagggggagctaa							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	17819461	17819461	G	-	DEL	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	frame_shift_del	c.670	p.L224fs	0.033	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	78	0	0	61	31	33.33	-	-	-	-	17819461	G	-	17819461	7	5	228	1	0	1	0	1	0	0	0	0	13092	991	35	0	926	0	RAI2	23	17819461	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	73690	17819461	137451099	1253	15359										
PHKA2	0	genome.wustl.edu	37	chrX	18913253	18913253	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctctgcgtttttctcatcgTacctctcgggtcgtcgagga	10	13	3	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	18913253	18913253	T	C	SNP	PHKA2	ENST00000481718	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	48	0	0	38	22	36.67	-	-	-	C	18913253	T	C	18913253	1	2	228	0	1	0	0	0	0	0	0	0	11918	1653	57	5		5	PHKA2	23	18913253	RNA	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1093792	18913253	136357307	1254	15360										
PHKA2	0	genome.wustl.edu	37	chrX	18969326	18969326	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccgtgccacaggtggcggtgTtgtacttggcgtgcaggctg	17	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	18969326	18969326	T	C	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.350	p.N117S	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	72	0	0	69	37	34.91	-	-	-	C	18969326	T	C	18969326	3	2	228	1	0	0	0	0	1	0	0	0	11918	1725	60	5	3477	5	PHKA2	23	18969326	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	56073	18969326	136301234	1255	15361										
MAP3K15	0	genome.wustl.edu	37	chrX	19410220	19410220	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	taggtgttcaccagaacattAtcgcccttcggaaaataaca	7	10	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	19410220	19410220	A	G	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	silent	c.2331	p.D777	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	149	0	0	74	55	42.64	-	-	-	G	19410220	A	G	19410220	2	3	228	1	0	0	0	0	0	0	0	1	9320	446	16	5		5	MAP3K15	23	19410220	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	440894	19410220	135860340	1256	15362										
SH3KBP1	0	genome.wustl.edu	37	chrX	19564084	19564084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agttttctttgacgcgtccaCtcctctgtgcgcaagtgaaa	9	11	2	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	19564084	19564084	C	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.1579	p.V527M	0.792	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	197	0	0	139	83	37.05	-	-	-	T	19564084	C	T	19564084	3	4	228	1	0	0	0	0	1	0	0	0	14344	565	20	4	434	4	SH3KBP1	23	19564084	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	153864	19564084	135706476	1257	15363										
SAT1	0	genome.wustl.edu	37	chrX	23802147	23802147	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagtgttcaaactactgaggAaaaaaaaaaattagatatgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	23802147	23802147	A	-	DEL	SAT1	ENST00000379251	human	ensembl	69_37n	1	known	frame_shift_del	c.439	p.N150fs	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SAT1	HGNC	ENSG00000130066	23	0	0	19	10	34.48	-	-	-	-	23802147	A	-	23802147	7	5	228	1	0	1	0	1	0	0	0	0	13938	261	9	0		0	SAT1	23	23802147	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	4238063	23802147	131468413	1258	15364										
MAGEB18	0	genome.wustl.edu	37	chrX	26157615	26157615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaggaagtggatcccatcagGcactactatgcctttttcag	9	10	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	26157615	26157615	G	A	SNP	MAGEB18	ENST00000325250	human	ensembl	69_37n	1	known	silent	c.513	p.R171	0.238	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774	72	0	0	33	18	35.29	-	-	-	A	26157615	G	A	26157615	2	1	228	1	0	0	0	0	0	0	0	1	9246	1194	42	4		4	MAGEB18	23	26157615	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2355468	26157615	129112945	1259	15365										
MAGEB4	0	genome.wustl.edu	37	chrX	30260296	30260296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctccgtgcccgtgagaaacGccagcggacccgtggtcaga	14	14	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	30260296	30260296	G	A	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.44	p.R15H	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	67	0	0	41	24	36.92	-	-	-	A	30260296	G	A	30260296	3	1	228	1	0	0	0	0	1	0	0	0	9249	1087	38	1	46	1	MAGEB4	23	30260296	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4102681	30260296	125010264	1260	15366										
EFHC2	0	genome.wustl.edu	37	chrX	44094659	44094660	+	Frame_Shift_Ins	INS	-	-	A													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtctgtgactagttttgcINSaaaaaaacggagtatattgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	44094659	44094660	-	A	INS	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1315_1314	p.A438fs	1.000:0.996	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	71	0	0	45	16	26.23	-	-	-	A	44094660	-	A	44094659	7	5	228	1	0	1	1	0	0	0	0	0	4982	710	25	0	962	0	EFHC2	23	44094659	Frame_Shift_Ins	INS	-	TCGA-A8-A09Z-01A-11W-A019-09	13834363	44094659	111175901	1261	15367										
DUSP21	0	genome.wustl.edu	37	chrX	44703610	44703610	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcctgttaccgatgctcgtGactcgcgtctctacgacttt	9	13	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	44703610	44703610	G	A	SNP	DUSP21	ENST00000339042	human	ensembl	69_37n	1	known	missense	c.232	p.D78N	0.001	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP21	HGNC	ENSG00000189037	198	0	0	126	83	39.71	-	-	-	A	44703610	G	A	44703610	3	1	228	1	0	0	0	0	1	0	0	0	4855	1290	45	2	234	2	DUSP21	23	44703610	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	608951	44703610	110566950	1262	15368										
KDM6A	0	genome.wustl.edu	37	chrX	44918596	44918597	+	Frame_Shift_Del	DEL	CT	CT	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agcctggatggacctaggcaCtctctatgaatcctgcaacc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	44918596	44918597	CT	-	DEL	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_del	c.1079_1080	p.Y362fs	1.000:0.964	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	117	0	0	62	48	43.64	-	-	-	-	44918597	CT	-	44918596	7	5	228	1	0	1	0	1	0	0	0	0	8190	565	20	0	1125	0	KDM6A	23	44918596	Frame_Shift_Del	DEL	CT	TCGA-A8-A09Z-01A-11W-A019-09	214986	44918596	110351964	1263	15369										
RBM10	0	genome.wustl.edu	37	chrX	47046095	47046095	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gacggggccttgctcttgtcGgccagcccactccccagcca	11	18	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	47046095	47046095	G	A	SNP	RBM10	ENST00000468791	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RBM10	HGNC	ENSG00000182872	15	0	0	12	10	45.45	-	-	-	A	47046095	G	A	47046095	1	1	228	0	1	0	0	0	0	0	0	0	13194	1131	39	1		1	RBM10	23	47046095	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	2127499	47046095	108224465	1264	15370										
SYN1	0	genome.wustl.edu	37	chrX	47464780	47464780	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaatccggcttcagagaccTagtgtggcaggggtaggagt	15	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	47464780	47464780	T	C	SNP	SYN1	ENST00000295987	human	ensembl	69_37n	-1	known	splice_site	c.528-2	e4-2	1.000	-	-	-	no_errors	SYN1	HGNC	ENSG00000008056	31	0	0	31	19	38	-	-	-	C	47464780	T	C	47464780	5	2	228	1	0	0	0	0	0	0	1	0	15532	1536	53	5	1631	5	SYN1	23	47464780	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	418685	47464780	107805780	1265	15371										
ELK1	0	genome.wustl.edu	37	chrX	47497483	47497483	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccaactcttccttgggcccTtctactttcacttctggggg	8	14	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	47497483	47497483	T	C	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	silent	c.753	p.E251	0.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	12	0	0	15	10	40	-	-	-	C	47497483	T	C	47497483	2	2	228	1	0	0	0	0	0	0	0	1	5096	1606	56	5		5	ELK1	23	47497483	Silent	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	32703	47497483	107773077	1266	15372										
TBC1D25	0	genome.wustl.edu	37	chrX	48399755	48399755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cttgccgccagagttccgctCttttgctgtagatccccaga	9	14	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48399755	48399755	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.158	p.S53F	0.979	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	223	0	0	235	124	34.54	-	-	-	T	48399755	C	T	48399755	3	4	228	1	0	0	0	0	1	0	0	0	15707	913	32	2	164	2	TBC1D25	23	48399755	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	902272	48399755	106870805	1267	15373										
TBC1D25	0	genome.wustl.edu	37	chrX	48418993	48418993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccatcttcctcatctccacCatccacccaggaggcctctc	4	21	4	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48418993	48418993	C	A	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1697	p.P566Q	0.023	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	141	1	0.7	93	80	46.24	-	-	-	A	48418993	C	A	48418993	3	1	228	1	0	0	0	0	1	0	0	0	15707	594	21	4	1719	4	TBC1D25	23	48418993	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	19238	48418993	106851567	1268	15374										
WAS	0	genome.wustl.edu	37	chrX	48542741	48542741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgagcactggaccaaggagCattgtggggctgtgtgcttc	15	9	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48542741	48542741	C	T	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	missense	c.202	p.H68Y	0.687	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	61	0	0	67	37	35.24	-	-	-	T	48542741	C	T	48542741	3	4	228	1	0	0	0	0	1	0	0	0	17348	710	25	4	208	4	WAS	23	48542741	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	123748	48542741	106727819	1269	15375										
GATA1	0	genome.wustl.edu	37	chrX	48652431	48652431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cccatctctaccaaggcctgGgccctgtggtgctgtcaggg	13	14	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48652431	48652431	G	T	SNP	GATA1	ENST00000376670	human	ensembl	69_37n	1	known	missense	c.1102	p.G368C	0.121	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145	21	0	0	44	27	38.03	-	-	-	T	48652431	G	T	48652431	3	4	228	1	0	0	0	0	1	0	0	0	6303	1232	43	4	1120	4	GATA1	23	48652431	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	109690	48652431	106618129	1270	15376										
TFE3	0	genome.wustl.edu	37	chrX	48887342	48887342	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gggtcgagacctcatcctgtCtccttccctcacctgggcaa	9	16	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48887342	48887342	C	T	SNP	TFE3	ENST00000478476	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.083	-	-	-	no_errors	TFE3	HGNC	ENSG00000068323	85	0	0	95	79	45.4	-	-	-	T	48887342	C	T	48887342	1	4	228	0	1	0	0	0	0	0	0	0	15895	928	32	2		2	TFE3	23	48887342	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	234911	48887342	106383218	1271	15377										
TFE3	0	genome.wustl.edu	37	chrX	48887602	48887602	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgggagggtgggggaaaaggCggggcctcatcctgactggt	20	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	48887602	48887602	C	T	SNP	TFE3	ENST00000478476	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	TFE3	HGNC	ENSG00000068323	49	0	0	48	43	47.25	-	-	-	T	48887602	C	T	48887602	1	4	228	0	1	0	0	0	0	0	0	0	15895	783	27	1		1	TFE3	23	48887602	RNA	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	260	48887602	106382958	1272	15378										
MAGIX	0	genome.wustl.edu	37	chrX	49020993	49020993	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcagggaacaggtcctaggtAgtttccatggcatgtccccc	11	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	49020993	49020993	A	G	SNP	MAGIX	ENST00000498742	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAGIX	HGNC	ENSG00000017621	323	0	0	195	139	41.62	-	-	-	G	49020993	A	G	49020993	1	3	228	0	1	0	0	0	0	0	0	0	9264	435	15	5		5	MAGIX	23	49020993	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	133391	49020993	106249567	1273	15379										
CCDC22	0	genome.wustl.edu	37	chrX	49098535	49098535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacttcctctaccccagtgaGcctgacctccgagacctgct	7	17	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	49098535	49098535	G	A	SNP	CCDC22	ENST00000376227	human	ensembl	69_37n	1	known	silent	c.282	p.E94	0.975	pfam_DUF812	pfam_DUF812	-	no_errors	CCDC22	HGNC	ENSG00000101997	51	0	0	34	31	47.69	-	-	-	A	49098535	G	A	49098535	2	1	228	1	0	0	0	0	0	0	0	1	2823	962	34	4		4	CCDC22	23	49098535	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	77542	49098535	106172025	1274	15380										
CCNB3	0	genome.wustl.edu	37	chrX	50052695	50052695	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccacttgaagaaaccactaaTattacagaccacctctggag	6	12	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	50052695	50052695	T	C	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.1526	p.I509T	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	153	0	0	101	72	41.62	-	-	-	C	50052695	T	C	50052695	3	2	228	1	0	0	0	0	1	0	0	0	2943	1406	49	5	1540	5	CCNB3	23	50052695	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	954160	50052695	105217865	1275	15381										
GPR173	0	genome.wustl.edu	37	chrX	53105960	53105960	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggtgctcaaggagcgtgccCtgcacaaggctccttactac	11	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	53105960	53105960	C	A	SNP	GPR173	ENST00000332582	human	ensembl	69_37n	1	known	missense	c.157	p.L53M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194	18	0	0	12	8	40	-	-	-	A	53105960	C	A	53105960	3	1	228	1	0	0	0	0	1	0	0	0	6721	680	24	4	159	4	GPR173	23	53105960	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3053265	53105960	102164600	1276	15382										
FAAH2	0	genome.wustl.edu	37	chrX	57337164	57337164	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gaagctttccagctacaaggTactattcttttatttttggc	7	8	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	57337164	57337164	T	C	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	1	known	splice_site	c.412+2	e3+2	0.736	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591	124	0	0	78	67	46.21	-	-	-	C	57337164	T	C	57337164	5	2	228	1	0	0	0	0	0	0	1	0	5394	1652	57	5	424	5	FAAH2	23	57337164	Splice_Site	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	4231204	57337164	97933396	1277	15383										
PJA1	0	genome.wustl.edu	37	chrX	68382257	68382257	+	Frame_Shift_Del	DEL	A	A	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcgtcatcatcatcagtatcAaaaaaaatttttggtttcac							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	68382257	68382257	A	-	DEL	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	frame_shift_del	c.825	p.F275fs	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	71	0	0	62	32	33.33	-	-	-	-	68382257	A	-	68382257	7	5	228	1	0	1	0	1	0	0	0	0	12035	127	5	0	1110	0	PJA1	23	68382257	Frame_Shift_Del	DEL	A	TCGA-A8-A09Z-01A-11W-A019-09	11045093	68382257	86888303	1278	15384										
NLGN3	0	genome.wustl.edu	37	chrX	70367816	70367816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tggaccaatacctgggggtgCcctacgcagctcccccgatc	11	16	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	70367816	70367816	C	T	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.217	p.P73S	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	40	0	0	31	21	40.38	-	-	-	T	70367816	C	T	70367816	3	4	228	1	0	0	0	0	1	0	0	0	10535	739	26	4	219	4	NLGN3	23	70367816	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1985559	70367816	84902744	1279	15385										
NLGN3	0	genome.wustl.edu	37	chrX	70390033	70390034	+	RNA	DEL	AC	AC	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acacacacacacacacgcagAcacacacacacacacacata							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	70390033	70390034	AC	-	DEL	NLGN3	ENST00000476589	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.115:0.187	-	-	-	no_errors	NLGN3	HGNC	ENSG00000196338	36	0	0	34	4	10.53	-	-	-	-	70390034	AC	-	70390033	6	5	228	0	1	1	0	1	0	0	0	0	10535	290	10	0		0	NLGN3	23	70390033	RNA	DEL	AC	TCGA-A8-A09Z-01A-11W-A019-09	22217	70390033	84880527	1280	15386										
NONO	0	genome.wustl.edu	37	chrX	70520012	70520012	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctaccctggaaaagtgttagGgattccttccaatagttaga	9	8	0	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	70520012	70520012	G	A	SNP	NONO	ENST00000473525	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NONO	HGNC	ENSG00000147140	83	0	0	73	48	39.67	-	-	-	A	70520012	G	A	70520012	1	1	228	0	1	0	0	0	0	0	0	0	10606	1247	43	4		4	NONO	23	70520012	RNA	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	129979	70520012	84750548	1281	15387										
CXCR3	0	genome.wustl.edu	37	chrX	70836740	70836740	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gtggcgttgaggcgctcgtcGtggtgggccgacaggaagat	19	8	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	70836740	70836740	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	silent	c.723	p.H241	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	15	0	0	7	6	42.86	-	-	-	A	70836740	G	A	70836740	2	1	228	1	0	0	0	0	0	0	0	1	4123	1136	40	1		1	CXCR3	23	70836740	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	316728	70836740	84433820	1282	15388										
PHKA1	0	genome.wustl.edu	37	chrX	71823055	71823055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gactgagattcatcaggcccTctgtggcttcctcagctagt	10	12	4	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	71823055	71823055	T	C	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.2831	p.E944G	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	159	0	0	80	74	48.05	-	-	-	C	71823055	T	C	71823055	3	2	228	1	0	0	0	0	1	0	0	0	11917	1551	54	5	868	5	PHKA1	23	71823055	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	986315	71823055	83447505	1283	15389										
NAP1L2	0	genome.wustl.edu	37	chrX	72433664	72433666	+	In_Frame_Del	DEL	TCC	TCC	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctccagtagcctcaatgtcgTcctcctcctcctcctcctcc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	72433664	72433666	TCC	-	DEL	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	in_frame_del	c.665_663	p.E221in_frame_del	0.004:0.003:0.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	245	1	0.41	177	47	20.98	-	-	-	-	72433666	TCC	-	72433664	7	5	228	1	0	1	0	1	0	0	0	0	10229	1667	58	0	721	0	NAP1L2	23	72433664	In_Frame_Del	DEL	TCC	TCGA-A8-A09Z-01A-11W-A019-09	610609	72433664	82836896	1284	15390										
TBX22	0	genome.wustl.edu	37	chrX	79286517	79286517	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agactgataagtggttccaaCcatcttaaagtgaatgacga	9	7	1	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	79286517	79286517	C	T	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	silent	c.1470	p.N490	0.012	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	198	0	0	88	59	40.14	-	-	-	T	79286517	C	T	79286517	2	4	228	1	0	0	0	0	0	0	0	1	15753	506	18	4		4	TBX22	23	79286517	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	6852853	79286517	75984043	1285	15391										
POU3F4	0	genome.wustl.edu	37	chrX	82763673	82763673	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cactaaccaccccaacgcctGgggggccagcccggcaccga							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	82763673	82763673	G	-	DEL	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	frame_shift_del	c.341	p.A116fs	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	54	0	0	36	30	44.78	-	-	-	-	82763673	G	-	82763673	7	5	228	1	0	1	0	1	0	0	0	0	12350	1357	47	0	343	0	POU3F4	23	82763673	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	3477156	82763673	72506887	1286	15392										
RPS6KA6	0	genome.wustl.edu	37	chrX	83403063	83403063	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttctaccttttaaagaggcTttttttaacaccttcattgc							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	83403063	83403063	T	-	DEL	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	frame_shift_del	c.327	p.A110fs	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	190	0	0	92	52	35.86	-	-	-	-	83403063	T	-	83403063	7	5	228	1	0	1	0	1	0	0	0	0	13741	1606	56	0	1986	0	RPS6KA6	23	83403063	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	639390	83403063	71867497	1287	15393										
ZNF711	0	genome.wustl.edu	37	chrX	84520175	84520175	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccagtggacattcagtagCtggagtgcttgaccagagcc	12	11	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	84520175	84520175	C	G	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.764	p.A255G	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	225	0	0	126	82	39.23	-	-	-	G	84520175	C	G	84520175	3	3	228	1	0	0	0	0	1	0	0	0	18212	797	28	4	844	4	ZNF711	23	84520175	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1117112	84520175	70750385	1288	15394										
POF1B	0	genome.wustl.edu	37	chrX	84634291	84634291	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	caccaccttgttcatgggccCactgtaggtcctcactcgct	8	16	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	84634291	84634291	C	A	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	missense	c.169	p.G57W	0.998	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	72	0	0	53	32	37.65	-	-	-	A	84634291	C	A	84634291	3	1	228	1	0	0	0	0	1	0	0	0	12256	594	21	4	1664	4	POF1B	23	84634291	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	114116	84634291	70636269	1289	15395										
PABPC5	0	genome.wustl.edu	37	chrX	90691598	90691598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gatggaagtggggcaaggcaAaggatttggtgtggtctgct	18	4	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	90691598	90691598	A	G	SNP	PABPC5	ENST00000312600	human	ensembl	69_37n	1	known	missense	c.1022	p.K341R	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740	180	0	0	129	74	36.45	-	-	-	G	90691598	A	G	90691598	3	3	228	1	0	0	0	0	1	0	0	0	11440	14	1	5	1024	5	PABPC5	23	90691598	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	6057307	90691598	64578962	1290	15396										
PCDH11X	0	genome.wustl.edu	37	chrX	91090836	91090836	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cattgcttttatgaagtggaGgttgccattttgccggatga	12	6	0	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	91090836	91090836	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.333	p.E111D	1.000	pfam_Cadherin_N,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	240	1	0.41	125	67	34.72	-	-	-	T	91090836	G	T	91090836	3	4	228	1	0	0	0	0	1	0	0	0	11581	991	35	4	335	4	PCDH11X	23	91090836	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	399238	91090836	64179724	1291	15397										
GLA	0	genome.wustl.edu	37	chrX	100653843	100653843	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctggttaaaagatgtccagTccaagatactctttatactt	6	9	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	100653843	100653843	T	A	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.731	p.D244V	0.967	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	322	0	0	170	118	40.97	-	-	-	A	100653843	T	A	100653843	3	1	228	1	0	0	0	0	1	0	0	0	6478	1667	58	5	570	5	GLA	23	100653843	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	9563007	100653843	54616717	1292	15398										
ARMCX5	0	genome.wustl.edu	37	chrX	101858323	101858323	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gctggactgaaattactaggGcacttgagtataaaatttga	10	5	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	101858323	101858323	G	A	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	silent	c.1254	p.G418	0.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	427	1	0.23	233	168	41.69	-	-	-	A	101858323	G	A	101858323	2	1	228	1	0	0	0	0	0	0	0	1	966	1190	42	4		4	ARMCX5	23	101858323	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	1204480	101858323	53412237	1293	15399										
GPRASP1	0	genome.wustl.edu	37	chrX	101910501	101910501	+	Frame_Shift_Del	DEL	T	T	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aagaggtcattggtccctggTtttggtctggagaacaagtt							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	101910501	101910501	T	-	DEL	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	frame_shift_del	c.1660	p.W555fs	0.736	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	383	0	0	183	105	35.12	-	-	-	-	101910501	T	-	101910501	7	5	228	1	0	1	0	1	0	0	0	0	6773	1725	60	0	1662	0	GPRASP1	23	101910501	Frame_Shift_Del	DEL	T	TCGA-A8-A09Z-01A-11W-A019-09	52178	101910501	53360059	1294	15400										
GPRASP1	0	genome.wustl.edu	37	chrX	101911193	101911193	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	attattggttcttggttctgGgctggagaagaggacagact	14	5	2	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	101911193	101911193	G	A	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	nonsense	c.2352	p.W784*	0.722	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	522	0	0	270	194	41.72	-	-	-	A	101911193	G	A	101911193	4	1	228	1	0	0	0	0	0	1	0	0	6773	1241	43	4	2354	4	GPRASP1	23	101911193	Nonsense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	692	101911193	53359367	1295	15401										
NGFRAP1	0	genome.wustl.edu	37	chrX	102632690	102632690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcagttgaggaattgtctgCgtatccttatgggggagctc	14	7	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	102632690	102632690	C	T	SNP	NGFRAP1	ENST00000299872	human	ensembl	69_37n	1	known	missense	c.271	p.R91C	1.000	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	NGFRAP1	HGNC	ENSG00000166681	341	0	0	166	118	41.55	-	-	-	T	102632690	C	T	102632690	3	4	228	1	0	0	0	0	1	0	0	0	10469	768	27	1	273	1	NGFRAP1	23	102632690	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	721497	102632690	52637870	1296	15402										
COL4A6	0	genome.wustl.edu	37	chrX	107434675	107434675	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aaaccatctctgccagggagGccagctgctccaattgtggt	11	12	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	107434675	107434675	G	A	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.1272	p.G424	0.224	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	171	0	0	109	81	41.97	-	-	-	A	107434675	G	A	107434675	2	1	228	1	0	0	0	0	0	0	0	1	3725	1190	42	4		4	COL4A6	23	107434675	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4801985	107434675	47835885	1297	15403										
GUCY2F	0	genome.wustl.edu	37	chrX	108696852	108696852	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	agctccatttccatgtccacAgtgtaggtgctatggagttc	10	10	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	108696852	108696852	A	G	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	silent	c.1269	p.T423	0.989	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	301	0	0	184	118	39.07	-	-	-	G	108696852	A	G	108696852	2	3	228	1	0	0	0	0	0	0	0	1	6949	175	7	5		5	GUCY2F	23	108696852	Silent	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1262177	108696852	46573708	1298	15404										
HTR2C	0	genome.wustl.edu	37	chrX	114082717	114082717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gagcatagccgtttcaattcGcggactaaggccatcatgaa	10	10	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	114082717	114082717	G	A	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	silent	c.501	p.S167	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	302	0	0	128	80	38.46	-	-	-	A	114082717	G	A	114082717	2	1	228	1	0	0	0	0	0	0	0	1	7497	1074	38	1		1	HTR2C	23	114082717	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	5385865	114082717	41187843	1299	15405										
AGTR2	0	genome.wustl.edu	37	chrX	115304211	115304211	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tttattatccctttaatattCatagcaacatgctattttgg	4	7	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	115304211	115304211	C	G	SNP	AGTR2	ENST00000371906	human	ensembl	69_37n	1	known	missense	c.678	p.F226L	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor,prints_Chemokine_rcpt	-	no_errors	AGTR2	HGNC	ENSG00000180772	391	1	0.26	207	132	38.94	-	-	-	G	115304211	C	G	115304211	3	3	228	1	0	0	0	0	1	0	0	0	402	825	29	2	680	2	AGTR2	23	115304211	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	1221494	115304211	39966349	1300	15406										
WDR44	0	genome.wustl.edu	37	chrX	117570666	117570666	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aatgtcattttccccatagaActactttcttctttcttctt	2	11	5	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	117570666	117570666	A	G	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1853	p.N618S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	143	0	0	80	60	42.86	-	-	-	G	117570666	A	G	117570666	3	3	228	1	0	0	0	0	1	0	0	0	17393	57	2	5	1907	5	WDR44	23	117570666	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2266455	117570666	37699894	1301	15407										
LAMP2	0	genome.wustl.edu	37	chrX	119589284	119589284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgagacgctgtcaattgaatAagtagatgctgccttggtaa	11	6	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	119589284	119589284	A	G	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	missense	c.325	p.Y109H	0.386	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	357	1	0.28	167	108	39.27	-	-	-	G	119589284	A	G	119589284	3	3	228	1	0	0	0	0	1	0	0	0	8672	362	13	5	1226	5	LAMP2	23	119589284	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2018618	119589284	35681276	1302	15408										
LAMP2	0	genome.wustl.edu	37	chrX	119590609	119590609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tcaaattaagttccaatgcaTaagaccgcacagctcctgga	7	11	1	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	119590609	119590609	T	C	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	missense	c.80	p.Y27C	0.223	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	106	0	0	64	32	33.33	-	-	-	C	119590609	T	C	119590609	3	2	228	1	0	0	0	0	1	0	0	0	8672	1406	49	5	1475	5	LAMP2	23	119590609	Missense_Mutation	SNP	T	TCGA-A8-A09Z-01A-11W-A019-09	1325	119590609	35679951	1303	15409										
XIAP	0	genome.wustl.edu	37	chrX	123020211	123020211	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tgcttctttgttttgggccgGaatcttaatattcgaagtga	10	6	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	123020211	123020211	G	A	SNP	XIAP	ENST00000355640	human	ensembl	69_37n	1	known	silent	c.699	p.R233	0.998	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	135	0	0	90	45	33.09	-	-	-	A	123020211	G	A	123020211	2	1	228	1	0	0	0	0	0	0	0	1	17525	1161	41	2		2	XIAP	23	123020211	Silent	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	3429602	123020211	32250349	1304	15410										
ODZ1	0	genome.wustl.edu	37	chrX	123515042	123515042	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccttggttgcttccctccttCaaggcaccgtccatcattgt	7	15	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	123515042	123515042	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.7543	p.E2515K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	413	0	0	214	154	41.85	-	-	-	T	123515042	C	T	123515042	3	4	228	1	0	0	0	0	1	0	0	0	10907	835	29	2	659	2	ODZ1	23	123515042	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	494831	123515042	31755518	1305	15411										
OCRL	0	genome.wustl.edu	37	chrX	128709951	128709951	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aacaatggacaggttccctgCcatttttctttcatccctaa	5	12	2	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	128709951	128709951	C	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	silent	c.1791	p.C597	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	523	0	0	245	167	40.53	-	-	-	T	128709951	C	T	128709951	2	4	228	1	0	0	0	0	0	0	0	1	10896	747	26	4		4	OCRL	23	128709951	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	5194909	128709951	26560609	1306	15412										
OCRL	0	genome.wustl.edu	37	chrX	128723576	128723576	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttgtgaggcagggtgtgcgtAtgaatgtgtgatgaccacgt	16	5	0	4			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	128723576	128723576	A	G	SNP	OCRL	ENST00000463271	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OCRL	HGNC	ENSG00000122126	22	0	0	8	9	52.94	-	-	-	G	128723576	A	G	128723576	1	3	228	0	1	0	0	0	0	0	0	0	10896	464	16	5		5	OCRL	23	128723576	RNA	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	13625	128723576	26546984	1307	15413										
FRMD7	0	genome.wustl.edu	37	chrX	131212885	131212885	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ccagctcagttgcaaatgtcAcctccaatgcagaattcctc	6	14	2	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	131212885	131212885	A	G	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	missense	c.1160	p.V387A	1.000	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	560	3	0.53	267	167	38.39	-	-	-	G	131212885	A	G	131212885	3	3	228	1	0	0	0	0	1	0	0	0	6104	159	6	5	988	5	FRMD7	23	131212885	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	2489309	131212885	24057675	1308	15414										
HTATSF1	0	genome.wustl.edu	37	chrX	135593711	135593711	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	actctgaaaactccgaatttGaagatgacggctctgaaaaa	8	8	2	5			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	135593711	135593711	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1807	p.E603K	0.578	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	461	0	0	276	201	42.14	-	-	-	A	135593711	G	A	135593711	3	1	228	1	0	0	0	0	1	0	0	0	7487	1291	45	2	1841	2	HTATSF1	23	135593711	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	4380826	135593711	19676849	1309	15415										
SOX3	0	genome.wustl.edu	37	chrX	139586632	139586632	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tccggatactccttcatgtgCacggcgcgaagtcgcttggc	12	13	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	139586632	139586632	C	T	SNP	SOX3	ENST00000370536	human	ensembl	69_37n	-1	known	silent	c.594	p.V198	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX3	HGNC	ENSG00000134595	79	0	0	52	23	30.67	-	-	-	T	139586632	C	T	139586632	2	4	228	1	0	0	0	0	0	0	0	1	15040	697	25	4		4	SOX3	23	139586632	Silent	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	3992921	139586632	15683928	1310	15416										
VMA21	0	genome.wustl.edu	37	chrX	150573406	150573406	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	aggcgcccttgggatgtccaAtagggacagctatttttacg	12	9	0	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	150573406	150573406	A	T	SNP	VMA21	ENST00000370361	human	ensembl	69_37n	1	known	missense	c.347	p.N116I	0.998	pfam_VMA21-like_domain	pfam_VMA21-like_domain	-	no_errors	VMA21	HGNC	ENSG00000160131	177	0	0	56	72	56.25	-	-	-	T	150573406	A	T	150573406	3	4	228	1	0	0	0	0	1	0	0	0	17272	101	4	5	192	5	VMA21	23	150573406	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	10986774	150573406	4697154	1311	15417										
PNMA3	0	genome.wustl.edu	37	chrX	152225894	152225894	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	tctgctagaacaaatgttgtAccgagaactaagagtgtttt	9	6	1	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	152225894	152225894	A	G	SNP	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	missense	c.482	p.Y161C	0.053	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	69	0	0	39	32	45.07	-	-	-	G	152225894	A	G	152225894	3	3	228	1	0	0	0	0	1	0	0	0	12229	391	14	5	484	5	PNMA3	23	152225894	Missense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	1652488	152225894	3044666	1312	15418										
ATP2B3	0	genome.wustl.edu	37	chrX	152821597	152821597	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	acacggcccgggccatcgcaGccaaatgcggcatcatccag	11	16	1	0			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	152821597	152821597	G	T	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.2149	p.A717S	0.977	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	81	0	0	43	36	45.57	-	-	-	T	152821597	G	T	152821597	3	4	228	1	0	0	0	0	1	0	0	0	1145	971	34	4	2195	4	ATP2B3	23	152821597	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	595703	152821597	2448963	1313	15419										
PNCK	0	genome.wustl.edu	37	chrX	152937644	152937644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cctccagagcgacgatgttgGggtgactgatcctgcaatgg	14	10	0	3			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	152937644	152937644	G	A	SNP	PNCK	ENST00000447676	human	ensembl	69_37n	-1	known	missense	c.461	p.P154L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PNCK	HGNC	ENSG00000130822	39	0	0	19	19	50	-	-	-	A	152937644	G	A	152937644	3	1	228	1	0	0	0	0	1	0	0	0	12219	1232	43	4	851	4	PNCK	23	152937644	Missense_Mutation	SNP	G	TCGA-A8-A09Z-01A-11W-A019-09	116047	152937644	2332916	1314	15420										
TAZ	0	genome.wustl.edu	37	chrX	153648358	153648358	+	RNA	DEL	C	C	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ttatgctaacatttctacctCccccctgggcaggaatcggg							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	153648358	153648358	C	-	DEL	TAZ	ENST00000498029	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAZ	HGNC	ENSG00000102125	196	0	0	190	88	30.99	-	-	-	-	153648358	C	-	153648358	6	5	228	0	1	1	0	1	0	0	0	0	15688	870	30	0		0	TAZ	23	153648358	RNA	DEL	C	TCGA-A8-A09Z-01A-11W-A019-09	710714	153648358	1622202	1315	15421										
PLXNA3	0	genome.wustl.edu	37	chrX	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-													0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	ctgctgctcttccttgccgtGgggggggccctgggcaacag							TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	153688565	153688565	G	-	DEL	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	frame_shift_del	c.42	p.A17fs	0.006	pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	14	0	0	10	4	28.57	-	-	-	-	153688565	G	-	153688565	7	5	228	1	0	1	0	1	0	0	0	0	12195	1335	47	0	44	0	PLXNA3	23	153688565	Frame_Shift_Del	DEL	G	TCGA-A8-A09Z-01A-11W-A019-09	40207	153688565	1581995	1316	15422										
BRCC3	0	genome.wustl.edu	37	chrX	154344339	154344339	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	gattgcctcacaggtatgagAgaatcgaaatcccaatccat	8	10	1	2			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	154344339	154344339	A	T	SNP	BRCC3	ENST00000399042	human	ensembl	69_37n	1	known	nonsense	c.631	p.R211*	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	BRCC3	HGNC	ENSG00000185515	87	0	0	52	43	45.26	-	-	-	T	154344339	A	T	154344339	4	4	228	1	0	0	0	0	0	1	0	0	1508	296	11	5	665	5	BRCC3	23	154344339	Nonsense_Mutation	SNP	A	TCGA-A8-A09Z-01A-11W-A019-09	655774	154344339	926221	1317	15423										
SPRY3	0	genome.wustl.edu	37	chrX	155004221	155004221	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0136570561456753	18	1	0.227578798635061	1.36317401606658	0.206115658786699	8.47916858723251e-05	0.00285952650976324	0	cagccatgagcctcatctccCtcttcctaccctgcctgtgc	6	19	3	1			TCGA-A8-A09Z-01A-11W-A019-09	TCGA-A8-A09Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8a59b247-da3f-4334-ad5c-f43f86164d5b	9e2abf15-6ef5-43a4-a4cb-60813371b770	X	155004221	155004221	C	A	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	missense	c.688	p.L230I	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	548	0	0	328	210	38.96	-	-	-	A	155004221	C	A	155004221	3	1	228	1	0	0	0	0	1	0	0	0	15198	681	24	4	690	4	SPRY3	23	155004221	Missense_Mutation	SNP	C	TCGA-A8-A09Z-01A-11W-A019-09	659882	155004221	266339	1318	15424										
FBXO44	0	genome.wustl.edu	37	chr1	11718395	11718396	+	Frame_Shift_Ins	INS	-	-	T													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ggaggatctctctcgagaccINSagaggaaggaattccccaat							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	11718395	11718396	-	T	INS	FBXO44	ENST00000376768	human	ensembl	69_37n	1	known	frame_shift_ins	c.337_338	p.Q113fs	0.998:0.983	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879	62	0	0	69	33	32.35	-	-	-	T	11718396	-	T	11718395	7	5	229	1	0	1	1	0	0	0	0	0	5799	595	21	0	343	0	FBXO44	1	11718395	Frame_Shift_Ins	INS	-	TCGA-A8-A0A1-01A-11W-A019-09		11718395	237532226	1	15425										
PADI2	0	genome.wustl.edu	37	chr1	17431555	17431555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ttgggccccggctggggccgCgctgtggggagagatgagag	21	9	0	2			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	17431555	17431555	C	T	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	missense	c.94	p.A32T	0.443	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	18	0	0	44	18	29.03	-	-	-	T	17431555	C	T	17431555	3	4	229	1	0	0	0	0	1	0	0	0	11451	782	27	1	1963	1	PADI2	1	17431555	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09	5713160	17431555	231819066	2	15426										
KLHDC7A	0	genome.wustl.edu	37	chr1	18809451	18809451	+	Frame_Shift_Del	DEL	C	C	-													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gcaggagcagcgctggtgggCcggccccaccgggggcagca							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	18809451	18809451	C	-	DEL	KLHDC7A	ENST00000400664	human	ensembl	69_37n	1	known	frame_shift_del	c.1976	p.G660fs	0.989	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023	13	0	0	6	3	33.33	-	-	-	-	18809451	C	-	18809451	7	5	229	1	0	1	0	1	0	0	0	0	8413	739	26	0	1978	0	KLHDC7A	1	18809451	Frame_Shift_Del	DEL	C	TCGA-A8-A0A1-01A-11W-A019-09	1377896	18809451	230441170	3	15427										
RAB42	0	genome.wustl.edu	37	chr1	28920546	28920547	+	Frame_Shift_Ins	INS	-	-	G													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	catcaagctagaagagggctINSgggggggtgtccggctcatc							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	28920546	28920547	-	G	INS	RAB42	ENST00000373826	human	ensembl	69_37n	1	known	frame_shift_ins	c.235_236	p.V82fs	1.000:1.000	NULL	pfam_Small_GTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060	23	0	0	13	3	18.75	-	-	-	G	28920547	-	G	28920546	7	5	229	1	0	1	1	0	0	0	0	0	13027	1580	55	0	237	0	RAB42	1	28920546	Frame_Shift_Ins	INS	-	TCGA-A8-A0A1-01A-11W-A019-09	10111095	28920546	220330075	4	15428										
MUTYH	0	genome.wustl.edu	37	chr1	45800095	45800095	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	aaggcttggcctgactgttgTtcttagcatgcttctgcctc	10	11	2	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	45800095	45800095	T	A	SNP	MUTYH	ENST00000450313	human	ensembl	69_37n	-1	known	missense	c.125	p.N42I	0.002	NULL	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781	192	0	0	171	62	26.5	-	-	-	A	45800095	T	A	45800095	3	1	229	1	0	0	0	0	1	0	0	0	10065	1725	60	5	1584	5	MUTYH	1	45800095	Missense_Mutation	SNP	T	TCGA-A8-A0A1-01A-11W-A019-09	16879549	45800095	203450526	5	15429										
COL24A1	0	genome.wustl.edu	37	chr1	86249998	86249998	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ttgatcaccttgtgctcctcGgtgacctcttttaccttgaa	7	12	2	3			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	86249998	86249998	G	A	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	nonsense	c.4111	p.R1371*	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	224	0	0	200	80	28.57	-	-	-	A	86249998	G	A	86249998	4	1	229	1	0	0	0	0	0	1	0	0	3713	1124	39	1	1081	1	COL24A1	1	86249998	Nonsense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	40449903	86249998	163000623	6	15430										
SYCP1	0	genome.wustl.edu	37	chr1	115453031	115453031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	taaatagggagaaaaggaaaCacttttatatgaaaataaac	7	3	0	2			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	1	115453031	115453031	C	T	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.1334	p.T445I	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	189	0	0	116	42	26.58	-	-	-	T	115453031	C	T	115453031	3	4	229	1	0	0	0	0	1	0	0	0	15523	478	17	4	1396	4	SYCP1	1	115453031	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09	29203033	115453031	133797590	7	15431										
GOLGB1	0	genome.wustl.edu	37	chr3	121415253	121415253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	caatttctgctgcaggctttCggcatggacttcagcttcat	9	11	3	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	3	121415253	121415253	C	T	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.4102	p.E1368K	0.033	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	336	0	0	259	94	26.55	-	-	-	T	121415253	C	T	121415253	3	4	229	1	0	0	0	0	1	0	0	0	6614	893	31	1	5717	1	GOLGB1	3	121415253	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		121415253	76607177	8	15432										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	109	0	0	36	43	54.43	-	-	-	A	178936091	G	A	178936091	3	1	229	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	57520838	178936091	19086339	9	15433										
PCDHGC5	0	genome.wustl.edu	37	chr5	140869114	140869114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gtggagccagcaccagctgcCtgctgccagtgcaggtggtg	16	12	0	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	5	140869114	140869114	C	T	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	silent	c.307	p.L103	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	155	0	0	54	18	25	-	-	-	T	140869114	C	T	140869114	2	4	229	1	0	0	0	0	0	0	0	1	11644	680	24	4		4	PCDHGC5	5	140869114	Silent	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		140869114	40046146	10	15434										
RREB1	0	genome.wustl.edu	37	chr6	7226853	7226853	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ttccacgacttaggattcacGgacttctcctgtaggaagtt	9	10	2	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	6	7226853	7226853	G	A	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	silent	c.861	p.T287	0.725	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	220	0	0	119	43	26.54	-	-	-	A	7226853	G	A	7226853	2	1	229	1	0	0	0	0	0	0	0	1	13765	1103	39	1		1	RREB1	6	7226853	Silent	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		7226853	163888214	11	15435										
BTNL2	0	genome.wustl.edu	37	chr6	32372739	32372739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ctactttgagcagcaagcttGtttctccacagtagttccca	7	12	1	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	6	32372739	32372739	G	T	SNP	BTNL2	ENST00000468270	human	ensembl	69_37n	-1	known	missense	c.404	p.T135K	0.987	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	BTNL2	HGNC	ENSG00000204290	198	0	0	130	75	36.59	-	-	-	T	32372739	G	T	32372739	3	4	229	1	0	0	0	0	1	0	0	0	1574	1377	48	4	983	4	BTNL2	6	32372739	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	25145886	32372739	138742328	12	15436										
AKAP12	0	genome.wustl.edu	37	chr6	151673850	151673850	+	Frame_Shift_Del	DEL	G	G	-													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ccaacattttagaaacaggtGaaacgttggagcctgcaggt							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	6	151673850	151673850	G	-	DEL	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	frame_shift_del	c.4324	p.E1442fs	0.099	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	437	0	0	384	119	23.24	-	-	-	-	151673850	G	-	151673850	7	5	229	1	0	1	0	1	0	0	0	0	448	1291	45	0	4363	0	AKAP12	6	151673850	Frame_Shift_Del	DEL	G	TCGA-A8-A0A1-01A-11W-A019-09	119301111	151673850	19441217	13	15437										
ZNF425	0	genome.wustl.edu	37	chr7	148801617	148801618	+	Frame_Shift_Ins	INS	-	-	T													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gttcctccagaagaagccccINStgctgcactccgggcactgg							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	7	148801617	148801618	-	T	INS	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1346_1345	p.R449fs	0.000:0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	71	0	0	59	110	65.09	-	-	-	T	148801618	-	T	148801617	7	5	229	1	0	1	1	0	0	0	0	0	17995	681	24	0	916	0	ZNF425	7	148801617	Frame_Shift_Ins	INS	-	TCGA-A8-A0A1-01A-11W-A019-09		148801617	10337046	14	15438										
KCNK9	0	genome.wustl.edu	37	chr8	140630698	140630698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gttctgcggtgccaccgagcGgccgccatagtcctgcgagc	14	15	1	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	8	140630698	140630698	G	A	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	0.992	pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	66	0	0	58	14	19.44	-	-	-	A	140630698	G	A	140630698	3	1	229	1	0	0	0	0	1	0	0	0	8126	1116	39	1	200	1	KCNK9	8	140630698	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		140630698	5733324	15	15439										
CYHR1	0	genome.wustl.edu	37	chr8	145689605	145689605	+	Frame_Shift_Del	DEL	G	G	-													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gacatcctccttcggtagcaGcagcagcctgtcctcctcca							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	8	145689605	145689605	G	-	DEL	CYHR1	ENST00000306145	human	ensembl	69_37n	-1	known	frame_shift_del	c.484	p.L162fs	0.091	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954	14	0	0	10	9	47.37	-	-	-	-	145689605	G	-	145689605	7	5	229	1	0	1	0	1	0	0	0	0	4171	962	34	0	953	0	CYHR1	8	145689605	Frame_Shift_Del	DEL	G	TCGA-A8-A0A1-01A-11W-A019-09	5058907	145689605	674417	16	15440										
NOL6	0	genome.wustl.edu	37	chr9	33467828	33467828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gctctggccagagcttcagcCggtggcacgctgcctgcagg	15	14	2	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	9	33467828	33467828	C	T	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.1463	p.R488Q	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	49	0	0	18	11	37.93	-	-	-	T	33467828	C	T	33467828	3	4	229	1	0	0	0	0	1	0	0	0	10597	652	23	1	2037	1	NOL6	9	33467828	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		33467828	107745603	17	15441										
DIRAS2	0	genome.wustl.edu	37	chr9	93375994	93375994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gccggtaggtgtcttccaccGtcgggatgtagctctcccgg	14	13	2	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	9	93375994	93375994	G	A	SNP	DIRAS2	ENST00000375765	human	ensembl	69_37n	-1	known	missense	c.116	p.T39M	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS2	HGNC	ENSG00000165023	200	0	0	241	104	30.14	-	-	-	A	93375994	G	A	93375994	3	1	229	1	0	0	0	0	1	0	0	0	4567	1145	40	1	487	1	DIRAS2	9	93375994	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	59908166	93375994	47837437	18	15442										
NDOR1	0	genome.wustl.edu	37	chr9	140109082	140109082	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tcggctgcccatgtccagcgGttctgccaggtgctgggcct	14	14	1	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	9	140109082	140109082	G	T	SNP	NDOR1	ENST00000371521	human	ensembl	69_37n	1	known	silent	c.783	p.R261	0.975	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566	18	0	0	11	10	47.62	-	-	-	T	140109082	G	T	140109082	2	4	229	1	0	0	0	0	0	0	0	1	10321	1248	44	4		4	NDOR1	9	140109082	Silent	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	46733088	140109082	1104349	19	15443										
SFXN2	0	genome.wustl.edu	37	chr10	104491539	104491539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	aaatgagattggtcattcccGggtgagcagaggcctccctt	12	10	1	3			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	10	104491539	104491539	G	A	SNP	SFXN2	ENST00000369893	human	ensembl	69_37n	1	known	missense	c.653	p.R218Q	0.998	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398	261	0	0	489	65	11.69	-	-	-	A	104491539	G	A	104491539	3	1	229	1	0	0	0	0	1	0	0	0	14283	1130	39	1	675	1	SFXN2	10	104491539	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		104491539	31043208	20	15444										
RNH1	0	genome.wustl.edu	37	chr11	498509	498509	+	Frame_Shift_Del	DEL	G	G	-													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	cagggtctcacacagcagtcGggcaccctcatcccccagct							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	11	498509	498509	G	-	DEL	RNH1	ENST00000354420	human	ensembl	69_37n	-1	known	frame_shift_del	c.904	p.R302fs	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191	18	0	0	10	5	33.33	-	-	-	-	498509	G	-	498509	7	5	229	1	0	1	0	1	0	0	0	0	13590	1124	39	0	497	0	RNH1	11	498509	Frame_Shift_Del	DEL	G	TCGA-A8-A0A1-01A-11W-A019-09		498509	134508007	21	15445										
ANO5	0	genome.wustl.edu	37	chr11	22272512	22272512	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tacagttctcccatttgtttGataatgagtcaacagtgttc	7	8	2	2			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	11	22272512	22272512	G	A	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.1135	p.D379N	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	166	0	0	100	16	13.79	-	-	-	A	22272512	G	A	22272512	3	1	229	1	0	0	0	0	1	0	0	0	699	1290	45	2	1181	2	ANO5	11	22272512	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	21774003	22272512	112734004	22	15446										
PPP1R1A	0	genome.wustl.edu	37	chr12	54976558	54976558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tgtcatcttcttccgttgccGtggagacattgccaaagtgg	11	10	3	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	12	54976558	54976558	G	A	SNP	PPP1R1A	ENST00000257905	human	ensembl	69_37n	-1	known	missense	c.205	p.R69W	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	142	0	0	167	58	25.78	-	-	-	A	54976558	G	A	54976558	3	1	229	1	0	0	0	0	1	0	0	0	12444	1144	40	1	326	1	PPP1R1A	12	54976558	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		54976558	78875337	23	15447										
ATP6V0A2	0	genome.wustl.edu	37	chr12	124218490	124218490	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tagggggaagtcataaaatgGtatgtctttttaatatcctt	9	4	2	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	12	124218490	124218490	G	A	SNP	ATP6V0A2	ENST00000330342	human	ensembl	69_37n	1	known	nonsense	c.666	p.W222*	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344	180	0	0	217	144	39.89	-	-	-	A	124218490	G	A	124218490	4	1	229	1	0	0	0	0	0	1	0	0	1173	1270	44	4	692	4	ATP6V0A2	12	124218490	Nonsense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09	69241932	124218490	9633405	24	15448										
MTUS2	0	genome.wustl.edu	37	chr13	30066850	30066850	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tttgaaaaactgcggctgtcAttgcaggttagtatttcttt	9	6	2	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	13	30066850	30066850	A	G	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.3603	p.S1201	0.857	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	96	0	0	118	41	25.79	-	-	-	G	30066850	A	G	30066850	2	3	229	1	0	0	0	0	0	0	0	1	10038	204	8	5		5	MTUS2	13	30066850	Silent	SNP	A	TCGA-A8-A0A1-01A-11W-A019-09		30066850	85103028	25	15449										
MAP1A	0	genome.wustl.edu	37	chr15	43817540	43817540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ccttgacaggaagtcacctgCcagctcattctctcactcta	6	15	5	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	15	43817540	43817540	C	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.3869	p.A1290V	0.109	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	100	0	0	142	60	29.7	-	-	-	T	43817540	C	T	43817540	3	4	229	1	0	0	0	0	1	0	0	0	9298	739	26	4	3871	4	MAP1A	15	43817540	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		43817540	58713852	26	15450										
CCL13	0	genome.wustl.edu	37	chr17	32685053	32685053	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	cttcctccacagcttcagaaCcaaactgggcaaggagatct	8	13	2	2			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	17	32685053	32685053	C	A	SNP	CCL13	ENST00000225844	human	ensembl	69_37n	1	known	missense	c.200	p.T67N	0.011	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL13	HGNC	ENSG00000181374	133	0	0	83	29	25.66	-	-	-	A	32685053	C	A	32685053	3	1	229	1	0	0	0	0	1	0	0	0	2911	507	18	4	210	4	CCL13	17	32685053	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		32685053	48510157	27	15451										
TEX19	0	genome.wustl.edu	37	chr17	80320351	80320351	+	Frame_Shift_Del	DEL	G	G	-													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	ccctggcagcagccccagaaGggttggaagatgcaggtctg							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	17	80320351	80320351	G	-	DEL	TEX19	ENST00000333437	human	ensembl	69_37n	1	known	frame_shift_del	c.325	p.L110fs	0.000	NULL	NULL	-	no_errors	TEX19	HGNC	ENSG00000182459	32	0	0	22	36	57.14	-	-	-	-	80320351	G	-	80320351	7	5	229	1	0	1	0	1	0	0	0	0	15875	1000	35	0	327	0	TEX19	17	80320351	Frame_Shift_Del	DEL	G	TCGA-A8-A0A1-01A-11W-A019-09	47635298	80320351	874859	28	15452										
WDR83	0	genome.wustl.edu	37	chr19	12780878	12780878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gacgctgctgcggacgtacaGcggccacggctacgaggtgc	16	13	0	0			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	19	12780878	12780878	G	T	SNP	WDR83	ENST00000242796	human	ensembl	69_37n	1	known	missense	c.191	p.S64I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR83	HGNC	ENSG00000123154	46	0	0	36	675	94.01	-	-	-	T	12780878	G	T	12780878	3	4	229	1	0	0	0	0	1	0	0	0	17429	971	34	4	197	4	WDR83	19	12780878	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		12780878	46348105	29	15453										
ZNF675	0	genome.wustl.edu	37	chr19	23836263	23836263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gtgtagtaagggatgaggagTgtttaaaagctttgccacat	13	4	0	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	19	23836263	23836263	T	C	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	missense	c.1472	p.H491R	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	141	0	0	106	36	25.35	-	-	-	C	23836263	T	C	23836263	3	2	229	1	0	0	0	0	1	0	0	0	18178	1696	59	5	238	5	ZNF675	19	23836263	Missense_Mutation	SNP	T	TCGA-A8-A0A1-01A-11W-A019-09	11055385	23836263	35292720	30	15454										
HCK	0	genome.wustl.edu	37	chr20	30689216	30689216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gctctacaacatcatgatgcGctgctggaaaaaccgtccgg	10	12	2	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	20	30689216	30689216	G	A	SNP	HCK	ENST00000375852	human	ensembl	69_37n	1	known	missense	c.1475	p.R492H	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	HCK	HGNC	ENSG00000101336	42	0	0	89	22	19.82	-	-	-	A	30689216	G	A	30689216	3	1	229	1	0	0	0	0	1	0	0	0	7045	1087	38	1	1531	1	HCK	20	30689216	Missense_Mutation	SNP	G	TCGA-A8-A0A1-01A-11W-A019-09		30689216	32336304	31	15455										
SOX10	0	genome.wustl.edu	37	chr22	38373898	38373899	+	Frame_Shift_Ins	INS	-	-	A													0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gggtgctcggggttcccatcINStgacatgggggagccctctc							TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	22	38373898	38373899	-	A	INS	SOX10	ENST00000360880	human	ensembl	69_37n	-1	known	frame_shift_ins	c.673_672	p.D224fs	1.000:0.787	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX10	HGNC	ENSG00000100146	39	0	0	15	4	21.05	-	-	-	A	38373899	-	A	38373898	7	5	229	1	0	1	1	0	0	0	0	0	15030	913	32	0	735	0	SOX10	22	38373898	Frame_Shift_Ins	INS	-	TCGA-A8-A0A1-01A-11W-A019-09		38373898	12930668	32	15456										
KIAA1644	0	genome.wustl.edu	37	chr22	44681446	44681446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gctgacccggccgaggggccCgagcggggttcccccaccgc	16	18	0	1			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	22	44681446	44681446	C	T	SNP	KIAA1644	ENST00000381176	human	ensembl	69_37n	-1	putative	missense	c.461	p.R154Q	0.995	NULL	NULL	-	no_errors	KIAA1644	HGNC	ENSG00000138944	78	0	0	27	12	30.77	-	-	-	T	44681446	C	T	44681446	3	4	229	1	0	0	0	0	1	0	0	0	8302	652	23	1	146	1	KIAA1644	22	44681446	Missense_Mutation	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09	6307548	44681446	6623120	33	15457										
WDR44	0	genome.wustl.edu	37	chrX	117521341	117521341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	tacaaagttggaaatgagtcCcctgtacaagaattgaaaca	8	7	0	3			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	X	117521341	117521341	C	T	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	silent	c.150	p.S50	0.646	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	135	0	0	131	34	20.61	-	-	-	T	117521341	C	T	117521341	2	4	229	1	0	0	0	0	0	0	0	1	17393	610	22	4		4	WDR44	23	117521341	Silent	SNP	C	TCGA-A8-A0A1-01A-11W-A019-09		117521341	37749219	34	15458										
GABRA3	0	genome.wustl.edu	37	chrX	151453148	151453148	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.951642479773168	0.852359208523592	NA	0.852359208523592	0.333333333333333	0.930327025915261	0	gcaagaacttaccatgtcagTgtctgacacagggccaaaac	9	11	2	2			TCGA-A8-A0A1-01A-11W-A019-09	TCGA-A8-A0A1-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73aa20fe-b74b-41ae-88d3-2d5a66908c25	c356aae0-c3f1-4c70-962d-e0d592174bbc	X	151453148	151453148	T	A	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.322	p.T108S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	398	0	0	303	47	13.43	-	-	-	A	151453148	T	A	151453148	3	1	229	1	0	0	0	0	1	0	0	0	6211	1696	59	5	1184	5	GABRA3	23	151453148	Missense_Mutation	SNP	T	TCGA-A8-A0A1-01A-11W-A019-09	33931807	151453148	3817412	35	15459										
LAMB3	0	genome.wustl.edu	37	chr1	209806016	209806016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	agaagcagctcccctgcagaCggagctgggacacagcatag	13	12	0	2			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	1	209806016	209806016	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.734	p.R245H	0.938	smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	141	0	0	132	21	13.73	-	-	-	T	209806016	C	T	209806016	3	4	230	1	0	0	0	0	1	0	0	0	8666	536	19	1	2848	1	LAMB3	1	209806016	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		209806016	39444605	1	15460										
FKBP1B	0	genome.wustl.edu	37	chr2	24285915	24285915	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cctctttctcctctccccatCtgcccccatccctgctagat	3	21	4	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	2	24285915	24285915	C	A	SNP	FKBP1B	ENST00000380991	human	ensembl	69_37n	1	known	silent	c.225	p.I75	0.998	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP1B	HGNC	ENSG00000119782	156	0	0	131	26	16.56	-	-	-	A	24285915	C	A	24285915	2	1	230	1	0	0	0	0	0	0	0	1	5953	903	32	2		2	FKBP1B	2	24285915	Silent	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		24285915	218913458	2	15461										
ZC3H15	0	genome.wustl.edu	37	chr2	187371487	187371487	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	atagatttaagcctgtacatCccaagagatgtagatgaaac	8	7	0	4			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	2	187371487	187371487	C	T	SNP	ZC3H15	ENST00000337859	human	ensembl	69_37n	1	known	silent	c.1014	p.I338	0.993	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	86	0	0	43	31	41.89	-	-	-	T	187371487	C	T	187371487	2	4	230	1	0	0	0	0	0	0	0	1	17663	845	30	2		2	ZC3H15	2	187371487	Silent	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	163085572	187371487	55827886	3	15462										
CYP27A1	0	genome.wustl.edu	37	chr2	219674428	219674428	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ggcaagtacccagtacggaaCgacatggagctatggaagga	14	8	0	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	2	219674428	219674428	C	T	SNP	CYP27A1	ENST00000258415	human	ensembl	69_37n	1	known	silent	c.384	p.N128	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP27A1	HGNC	ENSG00000135929	160	0	0	87	34	28.1	-	-	-	T	219674428	C	T	219674428	2	4	230	1	0	0	0	0	0	0	0	1	4189	535	19	1		1	CYP27A1	2	219674428	Silent	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	32302941	219674428	23524945	4	15463										
PDCD1	0	genome.wustl.edu	37	chr2	242794881	242794881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	attgcgccgggccctgaccaCgctcatgtggaagtcacgcc	12	15	2	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	2	242794881	242794881	C	T	SNP	PDCD1	ENST00000334409	human	ensembl	69_37n	-1	known	missense	c.328	p.V110M	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PDCD1	HGNC	ENSG00000188389	40	0	0	8	6	42.86	-	-	-	T	242794881	C	T	242794881	3	4	230	1	0	0	0	0	1	0	0	0	11688	536	19	1	554	1	PDCD1	2	242794881	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	23120453	242794881	404492	5	15464										
SUSD5	0	genome.wustl.edu	37	chr3	33194254	33194254	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ctagaccttctccatctcgaTctgctggtggtagtgccgag	11	12	3	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	3	33194254	33194254	T	A	SNP	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	missense	c.1870	p.I624F	1.000	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	186	0	0	98	56	36.36	-	-	-	A	33194254	T	A	33194254	3	1	230	1	0	0	0	0	1	0	0	0	15502	1435	50	5	23	5	SUSD5	3	33194254	Missense_Mutation	SNP	T	TCGA-A8-A0A2-01A-11W-A050-09		33194254	164828176	6	15465										
KALRN	0	genome.wustl.edu	37	chr3	124431854	124431855	+	Frame_Shift_Ins	INS	-	-	A													0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	tggctgtgaaatttgttagcINSaaaaaaatgaagaagaaaga							TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	3	124431854	124431855	-	A	INS	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	frame_shift_ins	c.8148_8149	p.M2718fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	128	0	0	138	18	11.54	-	-	-	A	124431855	-	A	124431854	7	5	230	1	0	1	1	0	0	0	0	0	8029	709	25	0	8534	0	KALRN	3	124431854	Frame_Shift_Ins	INS	-	TCGA-A8-A0A2-01A-11W-A050-09	91237600	124431854	73590576	7	15466										
AMOTL2	0	genome.wustl.edu	37	chr3	134089691	134089692	+	Frame_Shift_Ins	INS	-	-	G													0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cagcaggggggcccctcagtINSggggggccctgctggttgcg							TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	3	134089691	134089692	-	G	INS	AMOTL2	ENST00000249883	human	ensembl	69_37n	-1	known	frame_shift_ins	c.585_584	p.L196fs	0.000:0.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019	15	0	0	8	2	20	-	-	-	G	134089692	-	G	134089691	7	5	230	1	0	1	1	0	0	0	0	0	584	1683	59	0	1793	0	AMOTL2	3	134089691	Frame_Shift_Ins	INS	-	TCGA-A8-A0A2-01A-11W-A050-09	9657837	134089691	63932739	8	15467										
AP3B1	0	genome.wustl.edu	37	chr5	77458675	77458675	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	acagcagacagaccaagccaTtgaggcacgtgtcagtgact	11	11	1	4			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	5	77458675	77458675	T	C	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.1331	p.N444S	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	209	0	0	277	48	14.77	-	-	-	C	77458675	T	C	77458675	3	2	230	1	0	0	0	0	1	0	0	0	745	1493	52	5	2013	5	AP3B1	5	77458675	Missense_Mutation	SNP	T	TCGA-A8-A0A2-01A-11W-A050-09		77458675	103456585	9	15468										
SPOCK1	0	genome.wustl.edu	37	chr5	136314405	136314405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	atcctcatcatcctctgtcaCggctcgggtgtgcaccctca	8	16	5	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	5	136314405	136314405	C	T	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	missense	c.1258	p.V420M	0.273	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	353	0	0	435	51	10.49	-	-	-	T	136314405	C	T	136314405	3	4	230	1	0	0	0	0	1	0	0	0	15170	536	19	1	65	1	SPOCK1	5	136314405	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	58855730	136314405	44600855	10	15469										
BRD8	0	genome.wustl.edu	37	chr5	137506082	137506082	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ctttacttcagcctcctcttCttccaatttctttttcctaa	1	14	4	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	5	137506082	137506082	C	T	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	missense	c.457	p.E153K	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	161	0	0	121	62	33.88	-	-	-	T	137506082	C	T	137506082	3	4	230	1	0	0	0	0	1	0	0	0	1514	922	32	2	3621	2	BRD8	5	137506082	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	1191677	137506082	43409178	11	15470										
PCDHB5	0	genome.wustl.edu	37	chr5	140516085	140516085	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cgctctccagccctaccccaGaaaatgccccggaaactgta	7	17	1	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	5	140516085	140516085	G	T	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	nonsense	c.1069	p.E357*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	120	0	0	129	26	16.77	-	-	-	T	140516085	G	T	140516085	4	4	230	1	0	0	0	0	0	1	0	0	11618	943	33	2	1071	2	PCDHB5	5	140516085	Nonsense_Mutation	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	3010003	140516085	40399175	12	15471										
GABRG2	0	genome.wustl.edu	37	chr5	161576155	161576155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	tgaccaccctcagcaccattGcccggaaatcgctccccaag	7	18	1	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	5	161576155	161576155	G	T	SNP	GABRG2	ENST00000356592	human	ensembl	69_37n	1	known	missense	c.964	p.A322S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	336	0	0	301	39	11.44	-	-	-	T	161576155	G	T	161576155	3	4	230	1	0	0	0	0	1	0	0	0	6221	1319	46	4	1118	4	GABRG2	5	161576155	Missense_Mutation	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	21060070	161576155	19339105	13	15472										
ARHGEF5	0	genome.wustl.edu	37	chr7	144061204	144061204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	acctgacaaggaaatagatcAaaacagccagcaagaggaat	9	8	1	3			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	7	144061204	144061204	A	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.1442	p.Q481R	0.025	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	8	0	0	0	3	100	-	-	-	G	144061204	A	G	144061204	3	3	230	1	0	0	0	0	1	0	0	0	911	130	5	5	1444	5	ARHGEF5	7	144061204	Missense_Mutation	SNP	A	TCGA-A8-A0A2-01A-11W-A050-09		144061204	15077459	14	15473										
ZFPM2	0	genome.wustl.edu	37	chr8	106813892	106813892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ctgaactggtgcatcggcgaCtgaggcatggcagtagtagc	15	9	0	2			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	8	106813892	106813892	C	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.1582	p.L528M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	31	0	0	40	7	14.89	-	-	-	A	106813892	C	A	106813892	3	1	230	1	0	0	0	0	1	0	0	0	17754	564	20	4	1612	4	ZFPM2	8	106813892	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		106813892	39550130	15	15474										
TTC39B	0	genome.wustl.edu	37	chr9	15177715	15177715	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ctttccacaacatgattgtaAcatagttcagcttgcaaggg	8	9	1	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	9	15177715	15177715	A	G	SNP	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	silent	c.1821	p.C607	1.000	smart_TPR_repeat	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	162	0	0	114	26	18.57	-	-	-	G	15177715	A	G	15177715	2	3	230	1	0	0	0	0	0	0	0	1	16805	41	2	5		5	TTC39B	9	15177715	Silent	SNP	A	TCGA-A8-A0A2-01A-11W-A050-09		15177715	126035716	16	15475										
TNFSF15	0	genome.wustl.edu	37	chr9	117553070	117553070	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	gtctcccgactctgggatcaGcaggaatttgttggtatagt	12	8	3	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	9	117553070	117553070	G	A	SNP	TNFSF15	ENST00000374045	human	ensembl	69_37n	-1	known	silent	c.418	p.L140	1.000	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	-	no_errors	TNFSF15	HGNC	ENSG00000181634	305	0	0	146	24	14.12	-	-	-	A	117553070	G	A	117553070	2	1	230	1	0	0	0	0	0	0	0	1	16403	962	34	4		4	TNFSF15	9	117553070	Silent	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	102375355	117553070	23660361	17	15476										
SLC39A13	0	genome.wustl.edu	37	chr11	47431811	47431812	+	Frame_Shift_Ins	INS	-	-	G													0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	caacaaggaaagcgagtcctINSggggggctctgctgagcgga							TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	11	47431811	47431812	-	G	INS	SLC39A13	ENST00000362021	human	ensembl	69_37n	1	known	frame_shift_ins	c.166_167	p.A58fs	1.000:1.000	NULL	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915	84	0	0	27	3	10	-	-	-	G	47431812	-	G	47431811	7	5	230	1	0	1	1	0	0	0	0	0	14705	1580	55	0	168	0	SLC39A13	11	47431811	Frame_Shift_Ins	INS	-	TCGA-A8-A0A2-01A-11W-A050-09		47431811	87574705	18	15477										
RNF34	0	genome.wustl.edu	37	chr12	121855406	121855406	+	Frame_Shift_Del	DEL	G	G	-													0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	gtcacttattacaagagacaGcatttcagcgccctcagtta							TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	12	121855406	121855406	G	-	DEL	RNF34	ENST00000392465	human	ensembl	69_37n	1	known	frame_shift_del	c.328	p.A110fs	0.997	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF34	HGNC	ENSG00000170633	101	0	0	120	56	31.82	-	-	-	-	121855406	G	-	121855406	7	5	230	1	0	1	0	1	0	0	0	0	13575	971	34	0	348	0	RNF34	12	121855406	Frame_Shift_Del	DEL	G	TCGA-A8-A0A2-01A-11W-A050-09		121855406	11996489	19	15478										
APEX1	0	genome.wustl.edu	37	chr14	20923818	20923818	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	aacgggaatgccgaagcgtgGgaaaaagggagcggtggcgg	20	6	0	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	14	20923818	20923818	G	C	SNP	APEX1	ENST00000216714	human	ensembl	69_37n	1	known	missense	c.14	p.G5A	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX1	HGNC	ENSG00000100823	374	0	0	245	103	29.6	-	-	-	C	20923818	G	C	20923818	3	2	230	1	0	0	0	0	1	0	0	0	770	1232	43	4	16	4	APEX1	14	20923818	Missense_Mutation	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09		20923818	86425722	20	15479										
LRFN5	0	genome.wustl.edu	37	chr14	42361011	42361011	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	aagcagaaaagaaagactggCacaaagccaagtacagaacc	9	9	0	4			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	14	42361011	42361011	C	A	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	silent	c.1944	p.G648	0.315	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	129	0	0	118	20	14.49	-	-	-	A	42361011	C	A	42361011	2	1	230	1	0	0	0	0	0	0	0	1	9007	697	25	4		4	LRFN5	14	42361011	Silent	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09	21437193	42361011	64988529	21	15480										
VWA3A	0	genome.wustl.edu	37	chr16	22159556	22159556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	gacacgtcagggtccatgggCccctacctgcagcaggtgaa	13	13	1	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	16	22159556	22159556	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	silent	c.2913	p.G971	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	214	0	0	154	33	17.55	-	-	-	T	22159556	C	T	22159556	2	4	230	1	0	0	0	0	0	0	0	1	17337	726	26	4		4	VWA3A	16	22159556	Silent	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		22159556	68195197	22	15481										
KRT12	0	genome.wustl.edu	37	chr17	39022941	39022941	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	tgtgaagcatctgcagtcccAgttcctcgtgtttcatacca	8	12	2	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	17	39022941	39022941	A	G	SNP	KRT12	ENST00000251643	human	ensembl	69_37n	-1	known	silent	c.498	p.T166	0.002	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT12	HGNC	ENSG00000187242	67	0	0	48	18	26.87	-	-	-	G	39022941	A	G	39022941	2	3	230	1	0	0	0	0	0	0	0	1	8502	175	7	5		5	KRT12	17	39022941	Silent	SNP	A	TCGA-A8-A0A2-01A-11W-A050-09		39022941	42172269	23	15482										
C18orf34	0	genome.wustl.edu	37	chr18	30554604	30554604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	aggaccaccagtttgaagtgCtcctgccacagtgtgtgcat	11	11	0	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	18	30554604	30554604	C	A	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	missense	c.2502	p.E834D	0.999	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	68	0	0	44	9	16.98	-	-	-	A	30554604	C	A	30554604	3	1	230	1	0	0	0	0	1	0	0	0	1919	796	28	4	181	4	C18orf34	18	30554604	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		30554604	47522644	24	15483										
SPTBN4	0	genome.wustl.edu	37	chr19	40996086	40996086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cacctggagaacgtgggttcGcatgacatcgtggatgggaa	15	8	0	2			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	19	40996086	40996086	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	silent	c.426	p.S142	0.067	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	269	0	0	258	34	11.64	-	-	-	A	40996086	G	A	40996086	2	1	230	1	0	0	0	0	0	0	0	1	15212	1074	38	1		1	SPTBN4	19	40996086	Silent	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09		40996086	18132897	25	15484										
RSPH6A	0	genome.wustl.edu	37	chr19	46307978	46307978	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	atgtccacggccttctcctcGtcctcctcgccctcctcctc	5	22	1	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	19	46307978	46307978	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	69_37n	-1	known	silent	c.1185	p.D395	0.998	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941	92	0	0	76	18	18.75	-	-	-	A	46307978	G	A	46307978	2	1	230	1	0	0	0	0	0	0	0	1	13793	1136	40	1		1	RSPH6A	19	46307978	Silent	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	5311892	46307978	12821005	26	15485										
KCNC3	0	genome.wustl.edu	37	chr19	50827193	50827193	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	ggctccgtctccacctccacGttggtgatgttctccggagg	12	14	2	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	19	50827193	50827193	G	A	SNP	KCNC3	ENST00000477616	human	ensembl	69_37n	-1	known	silent	c.1017	p.N339	0.216	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	102	0	0	65	12	15.58	-	-	-	A	50827193	G	A	50827193	2	1	230	1	0	0	0	0	0	0	0	1	8070	1136	40	1		1	KCNC3	19	50827193	Silent	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	4519215	50827193	8301790	27	15486										
SHANK1	0	genome.wustl.edu	37	chr19	51189556	51189556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cgcgaggccaccgggaccagGgctttcgcttgcactgatgg	15	13	0	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	19	51189556	51189556	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.2539	p.P847S	0.994	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	187	0	0	156	21	11.73	-	-	-	A	51189556	G	A	51189556	3	1	230	1	0	0	0	0	1	0	0	0	14353	1232	43	4	3986	4	SHANK1	19	51189556	Missense_Mutation	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09	362363	51189556	7939427	28	15487										
DOK5	0	genome.wustl.edu	37	chr20	53205225	53205225	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	atctttttgacatttccacaGatcttgaggctgatgagtgg	10	7	2	5			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	20	53205225	53205225	G	T	SNP	DOK5	ENST00000262593	human	ensembl	69_37n	1	known	splice_site	c.290-1	e4-1	1.000	-	-	-	no_errors	DOK5	HGNC	ENSG00000101134	315	0	0	330	57	14.73	-	-	-	T	53205225	G	T	53205225	5	4	230	1	0	0	0	0	0	0	1	0	4735	956	33	2	303	2	DOK5	20	53205225	Splice_Site	SNP	G	TCGA-A8-A0A2-01A-11W-A050-09		53205225	9820295	29	15488										
CLDN17	0	genome.wustl.edu	37	chr21	31538360	31538360	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	actggatatctgtacccttgCttctttctgttgcagcagca	8	11	3	0			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	21	31538360	31538360	C	A	SNP	CLDN17	ENST00000286808	human	ensembl	69_37n	-1	known	missense	c.576	p.K192N	0.000	prints_Claudin8	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282	447	0	0	236	64	21.33	-	-	-	A	31538360	C	A	31538360	3	1	230	1	0	0	0	0	1	0	0	0	3508	796	28	4	102	4	CLDN17	21	31538360	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		31538360	16591535	30	15489										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	CC													0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	21	36252994	36252995	-	CC	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	128	0	0	62	32	34.04	-	-	-	CC	36252995	-	CC	36252994	7	5	230	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-A8-A0A2-01A-11W-A050-09	4714634	36252994	11876901	31	15490										
MAGED1	0	genome.wustl.edu	37	chrX	51638306	51638306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	2	0.871886716160037	1.1113172541744	0	1.1968031968032	0.444444444444444	1	0	gatggctgacattcaggtttCagcagctgccgctaggccta	12	11	2	1			TCGA-A8-A0A2-01A-11W-A050-09	TCGA-A8-A0A2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b681dba3-a608-47c2-9ae8-5d761d1e800e	74e986b0-8284-4f30-8bbd-6132f40ed403	X	51638306	51638306	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	missense	c.371	p.S124L	0.904	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	52	0	0	16	6	27.27	-	-	-	T	51638306	C	T	51638306	3	4	230	1	0	0	0	0	1	0	0	0	9254	838	29	2	381	2	MAGED1	23	51638306	Missense_Mutation	SNP	C	TCGA-A8-A0A2-01A-11W-A050-09		51638306	103632254	32	15491										
ANGPTL7	0	genome.wustl.edu	37	chr1	11254592	11254592	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gaactcaacagctatcgcctCttcctggggaactacactgg	9	13	2	0			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	11254592	11254592	C	T	SNP	ANGPTL7	ENST00000376819	human	ensembl	69_37n	1	known	silent	c.747	p.L249	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL7	HGNC	ENSG00000171819	119	0	0	96	46	32.39	-	-	-	T	11254592	C	T	11254592	2	4	231	1	0	0	0	0	0	0	0	1	619	900	32	2		2	ANGPTL7	1	11254592	Silent	SNP	C	TCGA-A8-A0A4-01A-11W-A019-09		11254592	237996029	1	15492										
OSCP1	0	genome.wustl.edu	37	chr1	36887790	36887790	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ttctttgatgatccagacacAtgagtttccacaggctgatt	8	9	1	5			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	36887790	36887790	A	C	SNP	OSCP1	ENST00000235532	human	ensembl	69_37n	-1	known	missense	c.780	p.H260Q	0.882	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	64	0	0	97	35	26.52	-	-	-	C	36887790	A	C	36887790	3	2	231	1	0	0	0	0	1	0	0	0	11359	214	8	5	375	5	OSCP1	1	36887790	Missense_Mutation	SNP	A	TCGA-A8-A0A4-01A-11W-A019-09	25633198	36887790	212362831	2	15493										
SLC6A17	0	genome.wustl.edu	37	chr1	110740813	110740815	+	In_Frame_Del	DEL	TCT	TCT	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	cctgcggcacttccacctgcTctctgatggctccaacaccc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	110740813	110740815	TCT	-	DEL	SLC6A17	ENST00000331565	human	ensembl	69_37n	1	known	in_frame_del	c.1931_1933	p.LS644in_frame_delP	0.999:0.774:0.915	pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	40	0	0	24	14	36.84	-	-	-	-	110740815	TCT	-	110740813	7	5	231	1	0	1	0	1	0	0	0	0	14769	1551	54	0	1973	0	SLC6A17	1	110740813	In_Frame_Del	DEL	TCT	TCGA-A8-A0A4-01A-11W-A019-09	73853023	110740813	138509808	3	15494										
FAM129A	0	genome.wustl.edu	37	chr1	184853799	184853799	+	Frame_Shift_Del	DEL	A	A	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gcctgacgcagtcactcaggAgggcactaaacctcttctgg							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	184853799	184853799	A	-	DEL	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	frame_shift_del	c.569	p.L190fs	0.063	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	104	0	0	146	117	41.64	-	-	-	-	184853799	A	-	184853799	7	5	231	1	0	1	0	1	0	0	0	0	5476	304	11	0	2257	0	FAM129A	1	184853799	Frame_Shift_Del	DEL	A	TCGA-A8-A0A4-01A-11W-A019-09	74112986	184853799	64396822	4	15495										
OR2L2	0	genome.wustl.edu	37	chr1	248202361	248202361	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tatgtacgtccaagatccctGcgatctccaacagaggacaa	8	12	1	2			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	248202361	248202361	G	A	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	silent	c.792	p.L264	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	441	0	0	254	124	32.72	-	-	-	A	248202361	G	A	248202361	2	1	231	1	0	0	0	0	0	0	0	1	11080	1306	46	4		4	OR2L2	1	248202361	Silent	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	63348562	248202361	1048260	5	15496										
PXDN	0	genome.wustl.edu	37	chr2	1653225	1653226	+	Frame_Shift_Ins	INS	-	-	G													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gttgatgccccgaggggtgtINStgaagccattctcgtacacg							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	1653225	1653226	-	G	INS	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2327_2326	p.N776fs	1.000:1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	63	0	0	28	86	75.44	-	-	-	G	1653226	-	G	1653225	7	5	231	1	0	1	1	0	0	0	0	0	12930	1725	60	0	2140	0	PXDN	2	1653225	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09		1653225	241546148	6	15497										
UGGT1	0	genome.wustl.edu	37	chr2	128884987	128884987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	agattcagccctcttcatcaAtggacttcacatggatttag	7	10	5	1			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	128884987	128884987	A	G	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.1187	p.N396S	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	69	0	0	49	32	39.51	-	-	-	G	128884987	A	G	128884987	3	3	231	1	0	0	0	0	1	0	0	0	17038	101	4	5	1233	5	UGGT1	2	128884987	Missense_Mutation	SNP	A	TCGA-A8-A0A4-01A-11W-A019-09	127231762	128884987	114314386	7	15498										
THSD7B	0	genome.wustl.edu	37	chr2	137814797	137814797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tgatggacaaaatgctatgtTaaggtaggagacctttgatg	12	4	0	3			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	137814797	137814797	T	C	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.947	p.L316S	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	160	0	0	44	19	30.16	-	-	-	C	137814797	T	C	137814797	3	2	231	1	0	0	0	0	1	0	0	0	15975	1764	61	5	860	5	THSD7B	2	137814797	Missense_Mutation	SNP	T	TCGA-A8-A0A4-01A-11W-A019-09	8929810	137814797	105384576	8	15499										
TTC21B	0	genome.wustl.edu	37	chr2	166786867	166786867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tttgaagaataagttgactaCgtccacactaaaaagaaaaa	6	6	0	4			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	166786867	166786867	C	T	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	missense	c.902	p.R301H	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	146	0	0	97	40	29.2	-	-	-	T	166786867	C	T	166786867	3	4	231	1	0	0	0	0	1	0	0	0	16785	536	19	1	3132	1	TTC21B	2	166786867	Missense_Mutation	SNP	C	TCGA-A8-A0A4-01A-11W-A019-09	28972070	166786867	76412506	9	15500										
TTN	0	genome.wustl.edu	37	chr2	179434772	179434772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gagtccagttactctcaggcGcaactctccaatcagacgct	8	14	3	1			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	179434772	179434772	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.68383	p.R22795C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	138	0	0	92	49	34.75	-	-	-	A	179434772	G	A	179434772	3	1	231	1	0	0	0	0	1	0	0	0	16832	1087	38	1	32040	1	TTN	2	179434772	Missense_Mutation	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	12647905	179434772	63764601	10	15501										
DOCK3	0	genome.wustl.edu	37	chr3	51417603	51417604	+	Frame_Shift_Ins	INS	-	-	C													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ccaccaccctctgggtgataINScccccccagccctccctgcc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	3	51417603	51417604	-	C	INS	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	frame_shift_ins	c.5548_5549	p.A1853fs	0.453:0.115	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	16	0	0	3	2	40	-	-	-	C	51417604	-	C	51417603	7	5	231	1	0	1	1	0	0	0	0	0	4723	391	14	0	5754	0	DOCK3	3	51417603	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09		51417603	146604827	11	15502										
PLEKHG4B	0	genome.wustl.edu	37	chr5	163330	163331	+	Frame_Shift_Del	DEL	CC	CC	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gggccttccaggggcaggggCcaccacggcccacctggagg							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	5	163330	163331	CC	-	DEL	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	frame_shift_del	c.2075_2076	p.A692fs	0.036:0.030	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	14	0	0	11	15	46.88	-	-	-	-	163331	CC	-	163330	7	5	231	1	0	1	0	1	0	0	0	0	12146	739	26	0	2117	0	PLEKHG4B	5	163330	Frame_Shift_Del	DEL	CC	TCGA-A8-A0A4-01A-11W-A019-09		163330	180751930	12	15503										
COMMD5	0	genome.wustl.edu	37	chr8	146076339	146076339	+	Frame_Shift_Del	DEL	C	C	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ccgctggctcccaaataccaCgctggccaagtccccgacca							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	8	146076339	146076339	C	-	DEL	COMMD5	ENST00000450361	human	ensembl	69_37n	-1	known	frame_shift_del	c.385	p.V129fs	0.720	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD5	HGNC	ENSG00000170619	9	0	0	5	4	40	-	-	-	-	146076339	C	-	146076339	7	5	231	1	0	1	0	1	0	0	0	0	3749	536	19	0	293	0	COMMD5	8	146076339	Frame_Shift_Del	DEL	C	TCGA-A8-A0A4-01A-11W-A019-09		146076339	287683	13	15504										
WNK2	0	genome.wustl.edu	37	chr9	96080102	96080102	+	Frame_Shift_Del	DEL	A	A	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tgcagccacctgtggtcagcAtgcctggcccccggctgcgg							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	9	96080102	96080102	A	-	DEL	WNK2	ENST00000411624	human	ensembl	69_37n	1	putative	frame_shift_del	c.5291	p.H1764fs	0.000	NULL	pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WNK2	HGNC	ENSG00000165238	16	0	0	8	18	69.23	-	-	-	-	96080102	A	-	96080102	7	5	231	1	0	1	0	1	0	0	0	0	17475	232	8	0		0	WNK2	9	96080102	Frame_Shift_Del	DEL	A	TCGA-A8-A0A4-01A-11W-A019-09		96080102	45133329	14	15505	164	2								
WNK2	0	genome.wustl.edu	37	chr9	96080105	96080106	+	Frame_Shift_Ins	INS	-	-	A													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gccacctgtggtcagcatgcINSctggcccccggctgcggatc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	9	96080105	96080106	-	A	INS	WNK2	ENST00000411624	human	ensembl	69_37n	1	putative	frame_shift_ins	c.5294_5295	p.W1766fs	0.001:0.004	NULL	pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WNK2	HGNC	ENSG00000165238	16	0	0	7	18	72	-	-	-	A	96080106	-	A	96080105	7	5	231	1	0	1	1	0	0	0	0	0	17475	754	26	0		0	WNK2	9	96080105	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09	3	96080105	45133326	15	15506	164	2								
SLK	0	genome.wustl.edu	37	chr10	105727649	105727650	+	Frame_Shift_Ins	INS	-	-	T													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ggagcctttgggaaagtgtaINScaaggtaagagggggaaaac							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	105727649	105727650	-	T	INS	SLK	ENST00000369755	human	ensembl	69_37n	1	known	frame_shift_ins	c.146_147	p.K50fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	71	0	0	15	17	53.12	-	-	-	T	105727650	-	T	105727649	7	5	231	1	0	1	1	0	0	0	0	0	14837	391	14	0	148	0	SLK	10	105727649	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09		105727649	29807098	16	15507										
C10orf120	0	genome.wustl.edu	37	chr10	124457723	124457723	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tagggtaaaggctgatgattTcccagagcccgagcaagcct	12	10	0	3			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	124457723	124457723	T	A	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	silent	c.534	p.G178	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	212	0	0	143	64	30.48	-	-	-	A	124457723	T	A	124457723	2	1	231	1	0	0	0	0	0	0	0	1	1600	1770	62	5		5	C10orf120	10	124457723	Silent	SNP	T	TCGA-A8-A0A4-01A-11W-A019-09	18730074	124457723	11077024	17	15508										
C12orf56	0	genome.wustl.edu	37	chr12	64746720	64746720	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tgaaatggaaataggaatttCctgacactgtttgacttttt	8	5	0	3			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	64746720	64746720	C	A	SNP	C12orf56	ENST00000333722	human	ensembl	69_37n	-1	known	missense	c.369	p.R123S	0.836	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	82	0	0	115	49	29.88	-	-	-	A	64746720	C	A	64746720	3	1	231	1	0	0	0	0	1	0	0	0	1712	854	30	2	1547	2	C12orf56	12	64746720	Missense_Mutation	SNP	C	TCGA-A8-A0A4-01A-11W-A019-09		64746720	69105175	18	15509										
TBX3	0	genome.wustl.edu	37	chr12	115118894	115118895	+	Frame_Shift_Ins	INS	-	-	T													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	taatgtccatcaataaaatgINStatttggcttttttatccag							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	115118894	115118895	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.447_446	p.Y149fs	0.891:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	325	0	0	93	42	31.11	-	-	-	T	115118895	-	T	115118894	7	5	231	1	0	1	1	0	0	0	0	0	15754	1372	48	0	1812	0	TBX3	12	115118894	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09	50372174	115118894	18733001	19	15510										
ADCY4	0	genome.wustl.edu	37	chr14	24800227	24800228	+	Frame_Shift_Ins	INS	-	-	AC													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ggaagtcttctctgaccttgINSgcaatctggtcgaacttgcc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	14	24800227	24800228	-	AC	INS	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	frame_shift_ins	c.927_926	p.K310fs	0.998:1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	42	0	0	20	1249	98.42	-	-	-	AC	24800228	-	AC	24800227	7	5	231	1	0	1	1	0	0	0	0	0	296	1335	47	0	2386	0	ADCY4	14	24800227	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09		24800227	82549313	20	15511										
ESR2	0	genome.wustl.edu	37	chr14	64727440	64727440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tctctgtctccgcacaaggcGgtacccacatctctctctcc	6	18	4	0			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	14	64727440	64727440	G	A	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	missense	c.679	p.R227C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	64	0	0	52	19	26.76	-	-	-	A	64727440	G	A	64727440	3	1	231	1	0	0	0	0	1	0	0	0	5294	1116	39	1	1019	1	ESR2	14	64727440	Missense_Mutation	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	39927213	64727440	42622100	21	15512										
TLN2	0	genome.wustl.edu	37	chr15	63029121	63029121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	aagctctgaaaacactggccCaggccgcccgtggagtggct	13	13	1	1			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	63029121	63029121	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	nonsense	c.3403	p.Q1135*	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	48	0	0	43	78	64.46	-	-	-	T	63029121	C	T	63029121	4	4	231	1	0	0	0	0	0	1	0	0	16043	595	21	4	3505	4	TLN2	15	63029121	Nonsense_Mutation	SNP	C	TCGA-A8-A0A4-01A-11W-A019-09		63029121	39502271	22	15513										
ITGA11	0	genome.wustl.edu	37	chr15	68624257	68624257	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	aagatgtagatggctcctgcGtggttgtcctccaggggggc	16	9	0	2			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	68624257	68624257	G	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.1710	p.H570	0.985	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	38	0	0	68	31	31.31	-	-	-	A	68624257	G	A	68624257	2	1	231	1	0	0	0	0	0	0	0	1	7928	1136	40	1		1	ITGA11	15	68624257	Silent	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	5595136	68624257	33907135	23	15514										
MAN2C1	0	genome.wustl.edu	37	chr15	75649184	75649184	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gacgcgccatacttgcagtcGttgagcagggccagcccaaa	12	13	0	1			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	75649184	75649184	G	A	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	silent	c.2607	p.N869	0.978	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	36	0	0	21	8	27.59	-	-	-	A	75649184	G	A	75649184	2	1	231	1	0	0	0	0	0	0	0	1	9289	1136	40	1		1	MAN2C1	15	75649184	Silent	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	7024927	75649184	26882208	24	15515										
CIITA	0	genome.wustl.edu	37	chr16	10996535	10996535	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tgcctttctccagttcctcgTtgagctgcctgaatctccct	7	15	2	2			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	10996535	10996535	T	C	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	silent	c.649	p.L217	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	118	0	0	77	34	30.63	-	-	-	C	10996535	T	C	10996535	2	2	231	1	0	0	0	0	0	0	0	1	3457	1722	60	5		5	CIITA	16	10996535	Silent	SNP	T	TCGA-A8-A0A4-01A-11W-A019-09		10996535	79358218	25	15516										
CDH1	0	genome.wustl.edu	37	chr16	68862203	68862204	+	Frame_Shift_Ins	INS	-	-	C													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gaaggaggcggagaagaggaINSccaggtgggttttgaaaacc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	68862203	68862204	-	C	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2291_2292	p.Q765fs	1.000:1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	122	0	0	110	72	39.56	-	-	-	C	68862204	-	C	68862203	7	5	231	1	0	1	1	0	0	0	0	0	3124	275	10	0	2345	0	CDH1	16	68862203	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09	57865668	68862203	21492550	26	15517										
TNK1	0	genome.wustl.edu	37	chr17	7291812	7291812	+	Frame_Shift_Del	DEL	G	G	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ccctgaaattcgacaagccaGagctgtgccccagggacctc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	17	7291812	7291812	G	-	DEL	TNK1	ENST00000576812	human	ensembl	69_37n	1	known	frame_shift_del	c.1580	p.R527fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292	70	0	0	7	7	50	-	-	-	-	7291812	G	-	7291812	7	5	231	1	0	1	0	1	0	0	0	0	16412	942	33	0	1603	0	TNK1	17	7291812	Frame_Shift_Del	DEL	G	TCGA-A8-A0A4-01A-11W-A019-09		7291812	73903398	27	15518										
PLXDC1	0	genome.wustl.edu	37	chr17	37235707	37235707	+	RNA	DEL	G	G	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gtgatcctcaaggtcgccttGactctgagctgccgtgacac							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	17	37235707	37235707	G	-	DEL	PLXDC1	ENST00000493200	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PLXDC1	HGNC	ENSG00000161381	8	0	0	6	12	63.16	-	-	-	-	37235707	G	-	37235707	6	5	231	0	1	1	0	1	0	0	0	0	12191	1305	45	0		0	PLXDC1	17	37235707	RNA	DEL	G	TCGA-A8-A0A4-01A-11W-A019-09	29943895	37235707	43959503	28	15519										
MBD1	0	genome.wustl.edu	37	chr18	47796443	47796443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	attaccagaatactggggttGggtggttggttcctggggga	17	5	0	1			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	18	47796443	47796443	G	C	SNP	MBD1	ENST00000339998	human	ensembl	69_37n	-1	known	missense	c.1591	p.Q531E	0.001	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	257	0	0	107	44	29.14	-	-	-	C	47796443	G	C	47796443	3	2	231	1	0	0	0	0	1	0	0	0	9413	1363	47	4		4	MBD1	18	47796443	Missense_Mutation	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09		47796443	30280805	29	15520										
IRF3	0	genome.wustl.edu	37	chr19	50165439	50165439	+	Frame_Shift_Del	DEL	T	T	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	tcccctgtctgtcagggacaTgccagggtctggcagtgtga							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165439	50165439	T	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.748	p.M250fs	0.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	65	0	0	47	37	44.05	-	-	-	-	50165439	T	-	50165439	7	5	231	1	0	1	0	1	0	0	0	0	7885	1464	51	0	547	0	IRF3	19	50165439	Frame_Shift_Del	DEL	T	TCGA-A8-A0A4-01A-11W-A019-09		50165439	8963544	30	15521	165	3								
IRF3	0	genome.wustl.edu	37	chr19	50165449	50165449	+	Frame_Shift_Del	DEL	T	T	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	gtcagggacatgccagggtcTggcagtgtgactggccatcc							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165449	50165449	T	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.738	p.D247fs	0.945	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	63	0	0	44	37	45.68	-	-	-	-	50165449	T	-	50165449	7	5	231	1	0	1	0	1	0	0	0	0	7885	1567	55	0	557	0	IRF3	19	50165449	Frame_Shift_Del	DEL	T	TCGA-A8-A0A4-01A-11W-A019-09	10	50165449	8963534	31	15522	165	3								
IRF3	0	genome.wustl.edu	37	chr19	50165454	50165455	+	Frame_Shift_Del	DEL	GT	GT	-													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ggacatgccagggtctggcaGtgtgactggccatccaggca							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165454	50165455	GT	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.733_732	p.L245fs	0.918:0.003	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	61	0	0	45	37	45.12	-	-	-	-	50165455	GT	-	50165454	7	5	231	1	0	1	0	1	0	0	0	0	7885	1020	36	0	562	0	IRF3	19	50165454	Frame_Shift_Del	DEL	GT	TCGA-A8-A0A4-01A-11W-A019-09	5	50165454	8963529	32	15523	165	3								
LSS	0	genome.wustl.edu	37	chr21	47626622	47626623	+	Frame_Shift_Ins	INS	-	-	C													0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	ttcagcagctccagcaagtgINSccccccacgcttggtctcat							TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	21	47626622	47626623	-	C	INS	LSS	ENST00000356396	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1528_1527	p.H509fs	0.000:0.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285	28	0	0	15	2	11.76	-	-	-	C	47626623	-	C	47626622	7	5	231	1	0	1	1	0	0	0	0	0	9131	1319	46	0	698	0	LSS	21	47626622	Frame_Shift_Ins	INS	-	TCGA-A8-A0A4-01A-11W-A019-09		47626622	503273	33	15524										
NHSL2	0	genome.wustl.edu	37	chrX	71359816	71359816	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	cactcagagacaaattttggCgtcaagctggcccagaaaac	9	11	2	2			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	X	71359816	71359816	C	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	silent	c.2418	p.G806	0.005	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	84	0	0	44	20	31.25	-	-	-	T	71359816	C	T	71359816	2	4	231	1	0	0	0	0	0	0	0	1	10484	755	27	1		1	NHSL2	23	71359816	Silent	SNP	C	TCGA-A8-A0A4-01A-11W-A019-09		71359816	83910744	34	15525										
LPAR4	0	genome.wustl.edu	37	chrX	78011420	78011420	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.03125	1	0.999387256799277	0.601754385964912	0	0.668615984405458	1	1	0	cccttccagctattcaagagGaagtgagtgatcaaacaaca	8	10	2	3			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	X	78011420	78011420	G	T	SNP	LPAR4	ENST00000373301	human	ensembl	69_37n	1	known	nonsense	c.1054	p.E352*	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2Y5_purnocptor,prints_P2_purnocptor	-	no_errors	LPAR4	HGNC	ENSG00000147145	331	0	0	242	44	15.38	-	-	-	T	78011420	G	T	78011420	4	4	231	1	0	0	0	0	0	1	0	0	8973	1175	41	2	1056	2	LPAR4	23	78011420	Nonsense_Mutation	SNP	G	TCGA-A8-A0A4-01A-11W-A019-09	6651604	78011420	77259140	35	15526										
AGRN	0	genome.wustl.edu	37	chr1	982714	982715	+	Frame_Shift_Ins	INS	-	-	T													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcccccacagccaccaagINSgtgttccagggcgtcctgga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	982714	982715	-	T	INS	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	frame_shift_ins	c.3396_3397	p.V1132fs	0.964:0.814	pfam_SEA,smart_SEA,pfscan_SEA	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	9	0	0	4	3	42.86	-	-	-	T	982715	-	T	982714	7	5	232	1	0	1	1	0	0	0	0	0	397	991	35	0	3474	0	AGRN	1	982714	Frame_Shift_Ins	INS	-	TCGA-A8-A0A6-01A-12W-A071-09		982714	248267907	1	15527										
PER3	0	genome.wustl.edu	37	chr1	7886709	7886709	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagaaaagatcctgtcatcAccctacagctcctatcttca	5	14	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	7886709	7886709	A	C	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.2103	p.S701	0.025	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	108	0	0	60	17	22.08	-	-	-	C	7886709	A	C	7886709	2	2	232	1	0	0	0	0	0	0	0	1	11804	146	6	5		5	PER3	1	7886709	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6903995	7886709	241363912	2	15528										
PER3	0	genome.wustl.edu	37	chr1	7887705	7887705	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggacccacccccttcagtcAccagccaaaggagagaggag	11	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	7887705	7887705	A	C	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.2692	p.T898P	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	172	0	0	121	29	19.21	-	-	-	C	7887705	A	C	7887705	3	2	232	1	0	0	0	0	1	0	0	0	11804	159	6	5	2758	5	PER3	1	7887705	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	996	7887705	241362916	3	15529										
RERE	0	genome.wustl.edu	37	chr1	8421932	8421932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggaagaggcttcctccttcAccttctgcaggggaaaagcc	12	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	8421932	8421932	A	C	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.1907	p.V636G	0.997	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	37	0	0	23	9	28.12	-	-	-	C	8421932	A	C	8421932	3	2	232	1	0	0	0	0	1	0	0	0	13314	159	6	5	2821	5	RERE	1	8421932	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	534227	8421932	240828689	4	15530										
RERE	0	genome.wustl.edu	37	chr1	8716261	8716261	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggcgtggccttgaattctcActctctcttgctttgtctct	8	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	8716261	8716261	A	C	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.96	p.S32R	0.872	NULL	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	610	1	0.16	402	74	15.55	-	-	-	C	8716261	A	C	8716261	3	2	232	1	0	0	0	0	1	0	0	0	13314	156	6	5	4692	5	RERE	1	8716261	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	294329	8716261	240534360	5	15531										
UBE4B	0	genome.wustl.edu	37	chr1	10132172	10132172	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccccagagggagaacccTccggggcctcccatagcggc	12	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	10132172	10132172	T	C	SNP	UBE4B	ENST00000495077	human	ensembl	69_37n	1	putative	missense	c.43	p.S15P	0.955	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBE4B	HGNC	ENSG00000130939	85	0	0	116	19	13.97	-	-	-	C	10132172	T	C	10132172	3	2	232	1	0	0	0	0	1	0	0	0	16980	1538	54	5	117	5	UBE4B	1	10132172	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1415911	10132172	239118449	6	15532										
PGD	0	genome.wustl.edu	37	chr1	10479823	10479823	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgatcatgctgctcctgtcAccctccacgattccacagac	6	17	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	10479823	10479823	A	C	SNP	PGD	ENST00000498356	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGD	HGNC	ENSG00000142657	104	1	0.95	81	23	21.9	-	-	-	C	10479823	A	C	10479823	1	2	232	0	1	0	0	0	0	0	0	0	11861	174	6	5		5	PGD	1	10479823	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	347651	10479823	238770798	7	15533										
C1orf127	0	genome.wustl.edu	37	chr1	11024285	11024285	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactccgctccaaccccatcAcccctttctgaaatattctg	3	18	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	11024285	11024285	A	C	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.416	p.V139G	0.016	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	38	0	0	27	18	40	-	-	-	C	11024285	A	C	11024285	3	2	232	1	0	0	0	0	1	0	0	0	2013	159	6	5	2087	5	C1orf127	1	11024285	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	544462	11024285	238226336	8	15534										
CLCN6	0	genome.wustl.edu	37	chr1	11898817	11898817	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accagaaacgtaggcatcccAccaggaggggagagtgtggc	15	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	11898817	11898817	A	C	SNP	CLCN6	ENST00000376496	human	ensembl	69_37n	1	novel	missense	c.2629	p.T877P	0.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	19	0	0	15	9	36	-	-	-	C	11898817	A	C	11898817	3	2	232	1	0	0	0	0	1	0	0	0	3497	174	6	5		5	CLCN6	1	11898817	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	874532	11898817	237351804	9	15535										
VPS13D	0	genome.wustl.edu	37	chr1	12333109	12333109	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatatttctgcccctcaggTgatatttcctgatgatttca	8	9	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12333109	12333109	T	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.2153	p.V718G	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	184	0	0	155	34	17.99	-	-	-	G	12333109	T	G	12333109	3	3	232	1	0	0	0	0	1	0	0	0	17289	1696	59	5	2219	5	VPS13D	1	12333109	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	434292	12333109	236917512	10	15536										
VPS13D	0	genome.wustl.edu	37	chr1	12338010	12338010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagccggatgttttgcccAccttccgggtctggcagtgc	14	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12338010	12338010	A	C	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	missense	c.833	p.H278P	0.075	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	267	2	0.73	143	35	19.44	-	-	-	C	12338010	A	C	12338010	3	2	232	1	0	0	0	0	1	0	0	0	17289	146	6	5	4435	5	VPS13D	1	12338010	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4901	12338010	236912611	11	15537										
VPS13D	0	genome.wustl.edu	37	chr1	12343273	12343273	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtttagcacaaaaagaatAcctttctcagtcttgcccct	5	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12343273	12343273	A	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.5114	p.Y1705S	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	353	1	0.28	273	44	13.84	-	-	-	C	12343273	A	C	12343273	3	2	232	1	0	0	0	0	1	0	0	0	17289	391	14	5	5192	5	VPS13D	1	12343273	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5263	12343273	236907348	12	15538										
VPS13D	0	genome.wustl.edu	37	chr1	12423158	12423158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcccgaaggttacatttccAcccttcctggttccagtgtg	8	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12423158	12423158	A	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.10303	p.T3435P	1.000	pfam_VPSAP	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	224	0	0	199	40	16.74	-	-	-	C	12423158	A	C	12423158	3	2	232	1	0	0	0	0	1	0	0	0	17289	159	6	5	10505	5	VPS13D	1	12423158	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	79885	12423158	236827463	13	15539										
VPS13D	0	genome.wustl.edu	37	chr1	12429618	12429618	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attatgcctgggacgaacccAccttgccaccttttatcact	6	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12429618	12429618	A	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.10669	p.T3557P	1.000	pfam_VPSAP	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	252	0	0	219	32	12.75	-	-	-	C	12429618	A	C	12429618	3	2	232	1	0	0	0	0	1	0	0	0	17289	159	6	5	10879	5	VPS13D	1	12429618	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6460	12429618	236821003	14	15540										
VPS13D	0	genome.wustl.edu	37	chr1	12446264	12446264	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgcttgtgaggttagaaggTggaattgggttgtccttaat	15	3	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12446264	12446264	T	G	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	missense	c.7970	p.V2657G	0.996	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	267	0	0	237	34	12.55	-	-	-	G	12446264	T	G	12446264	3	3	232	1	0	0	0	0	1	0	0	0	17289	1683	59	5	11739	5	VPS13D	1	12446264	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	16646	12446264	236804357	15	15541										
PRAMEF1	0	genome.wustl.edu	37	chr1	12853537	12853537	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acacttccagactctgacggTgatggttcaggcctggccct	11	13	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12853537	12853537	T	G	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	missense	c.161	p.V54G	0.001	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	378	1	0.26	236	33	12.27	-	-	-	G	12853537	T	G	12853537	3	3	232	1	0	0	0	0	1	0	0	0	12502	1696	59	5	163	5	PRAMEF1	1	12853537	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	407273	12853537	236397084	16	15542										
PRAMEF1	0	genome.wustl.edu	37	chr1	12853560	12853560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggttcaggcctggcccttcAcctgcctccctctgggatca	10	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12853560	12853560	A	C	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	missense	c.184	p.T62P	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	376	3	0.79	222	47	17.28	-	-	-	C	12853560	A	C	12853560	3	2	232	1	0	0	0	0	1	0	0	0	12502	159	6	5	186	5	PRAMEF1	1	12853560	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	23	12853560	236397061	17	15543										
PRAMEF1	0	genome.wustl.edu	37	chr1	12854222	12854222	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagcaccagcccttaaaggTgttcatagacatctgcctca	8	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12854222	12854222	T	G	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	missense	c.446	p.V149G	0.003	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	586	2	0.34	472	63	11.71	-	-	-	G	12854222	T	G	12854222	3	3	232	1	0	0	0	0	1	0	0	0	12502	1696	59	5	452	5	PRAMEF1	1	12854222	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	662	12854222	236396399	18	15544										
PRAMEF2	0	genome.wustl.edu	37	chr1	12919706	12919706	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagcaccagcccttaaaggTgttcatagacatctgcctca	8	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	12919706	12919706	T	G	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.446	p.V149G	0.131	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	481	1	0.21	398	49	10.86	-	-	-	G	12919706	T	G	12919706	3	3	232	1	0	0	0	0	1	0	0	0	12513	1696	59	5	452	5	PRAMEF2	1	12919706	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	65484	12919706	236330915	19	15545										
PRAMEF6	0	genome.wustl.edu	37	chr1	13111522	13111522	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacccatagaaggaggcaggTgaggtattcatccagagtcc	13	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	13111522	13111522	T	G	SNP	PRAMEF6	ENST00000376182	human	ensembl	69_37n	-1	known	missense	c.493	p.T165P	0.007	NULL	NULL	-	no_errors	PRAMEF6	HGNC	ENSG00000232423	115	0	0	78	24	22.86	-	-	-	G	13111522	T	G	13111522	3	3	232	1	0	0	0	0	1	0	0	0	12518	1696	59	5		5	PRAMEF6	1	13111522	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	191816	13111522	236139099	20	15546										
PRAMEF18	0	genome.wustl.edu	37	chr1	13474849	13474849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagtggggtgaggagctccGaaatgacacgacccctgttg	15	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	13474849	13474849	G	A	SNP	PRAMEF18	ENST00000376126	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427L	0.000	NULL	NULL	-	no_errors	PRAMEF18	HGNC	ENSG00000204491	48	0	0	64	9	12.33	-	-	-	A	13474849	G	A	13474849	3	1	232	1	0	0	0	0	1	0	0	0	12511	1059	37	1	163	1	PRAMEF18	1	13474849	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	363327	13474849	235775772	21	15547										
RSC1A1	0	genome.wustl.edu	37	chr1	15988079	15988079	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcttccaccattgattttTcctgccacagatattgaccg	5	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	15988079	15988079	T	C	SNP	RSC1A1	ENST00000345034	human	ensembl	69_37n	1	known	silent	c.1716	p.F572	1.000	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695	171	1	0.58	144	28	16.28	-	-	-	C	15988079	T	C	15988079	2	2	232	1	0	0	0	0	0	0	0	1	13784	1780	62	5		5	RSC1A1	1	15988079	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2513230	15988079	233262542	22	15548										
SPEN	0	genome.wustl.edu	37	chr1	16258785	16258785	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctgaggccaccactgaggTgggcccccaaataggcgtga	13	13	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	16258785	16258785	T	G	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.6050	p.V2017G	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	115	0	0	113	26	18.57	-	-	-	G	16258785	T	G	16258785	3	3	232	1	0	0	0	0	1	0	0	0	15129	1696	59	5	6092	5	SPEN	1	16258785	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	270706	16258785	232991836	23	15549										
SPEN	0	genome.wustl.edu	37	chr1	16260564	16260564	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgctgacaaggaaaaggTggctccagtcattgctccca	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	16260564	16260564	T	G	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.7829	p.V2610G	0.737	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	275	2	0.72	250	35	12.15	-	-	-	G	16260564	T	G	16260564	3	3	232	1	0	0	0	0	1	0	0	0	15129	1696	59	5	7871	5	SPEN	1	16260564	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1779	16260564	232990057	24	15550										
ARHGEF19	0	genome.wustl.edu	37	chr1	16525026	16525026	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggagacactgcaggccccTccaggaccatccaggagcca	11	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	16525026	16525026	T	C	SNP	ARHGEF19	ENST00000478117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	101	0	0	65	13	16.67	-	-	-	C	16525026	T	C	16525026	1	2	232	0	1	0	0	0	0	0	0	0	904	1566	54	5		5	ARHGEF19	1	16525026	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	264462	16525026	232725595	25	15551										
NECAP2	0	genome.wustl.edu	37	chr1	16774759	16774759	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagcagagactcaggagaAcccaggacaagccacctctc	11	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	16774759	16774759	A	C	SNP	NECAP2	ENST00000508680	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NECAP2	HGNC	ENSG00000157191	44	0	0	31	8	20.51	-	-	-	C	16774759	A	C	16774759	1	2	232	0	1	0	0	0	0	0	0	0	10380	58	2	5		5	NECAP2	1	16774759	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	249733	16774759	232475862	26	15552										
NBPF1	0	genome.wustl.edu	37	chr1	16918512	16918512	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accaagggccagctgataccAccatgctgacgtttgtggca	11	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	16918512	16918512	A	C	SNP	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	661	2	0.3	538	62	10.26	-	-	-	C	16918512	A	C	16918512	1	2	232	0	1	0	0	0	0	0	0	0	10264	159	6	5		5	NBPF1	1	16918512	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	143753	16918512	232332109	27	15553										
PADI1	0	genome.wustl.edu	37	chr1	17570781	17570781	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgccctcttgctagggaAccctgccagggtgaaggcaa	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	17570781	17570781	A	C	SNP	PADI1	ENST00000460293	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI1	HGNC	ENSG00000142623	27	0	0	13	9	40.91	-	-	-	C	17570781	A	C	17570781	1	2	232	0	1	0	0	0	0	0	0	0	11450	58	2	5		5	PADI1	1	17570781	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	652269	17570781	231679840	28	15554										
PADI6	0	genome.wustl.edu	37	chr1	17698787	17698787	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccttccagagtatcatccAcctgtccctggacagccctg	8	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	17698787	17698787	A	C	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	85	0	0	44	13	22.81	-	-	-	C	17698787	A	C	17698787	1	2	232	0	1	0	0	0	0	0	0	0	11454	159	6	5		5	PADI6	1	17698787	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	128006	17698787	231551834	29	15555										
ALDH4A1	0	genome.wustl.edu	37	chr1	19201049	19201049	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccggcagcattcctcagcAcctttgtggcctcctgcacg	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19201049	19201049	A	C	SNP	ALDH4A1	ENST00000290597	human	ensembl	69_37n	-1	known	missense	c.1487	p.V496G	0.772	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	-	no_errors	ALDH4A1	HGNC	ENSG00000159423	82	0	0	77	18	18.95	-	-	-	C	19201049	A	C	19201049	3	2	232	1	0	0	0	0	1	0	0	0	501	159	6	5	212	5	ALDH4A1	1	19201049	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1502262	19201049	230049572	30	15556										
UBR4	0	genome.wustl.edu	37	chr1	19439145	19439145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgcctcaaggctgggttggTggccagggcccgaagtagtg	18	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19439145	19439145	T	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.11674	p.T3892P	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	121	1	0.81	100	23	18.7	-	-	-	G	19439145	T	G	19439145	3	3	232	1	0	0	0	0	1	0	0	0	17001	1696	59	5	3993	5	UBR4	1	19439145	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	238096	19439145	229811476	31	15557										
UBR4	0	genome.wustl.edu	37	chr1	19472303	19472303	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atacctggaaggcaggcaggTgccaagaaggcattcttggg	15	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19472303	19472303	T	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.7929	p.A2643	0.817	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	119	1	0.83	65	15	18.75	-	-	-	G	19472303	T	G	19472303	2	3	232	1	0	0	0	0	0	0	0	1	17001	1683	59	5		5	UBR4	1	19472303	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	33158	19472303	229778318	32	15558										
UBR4	0	genome.wustl.edu	37	chr1	19478891	19478891	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgtaggaggtcgttaccAccaaactccacatctgtcag	8	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19478891	19478891	A	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.6912	p.G2304	0.954	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	271	0	0	198	25	11.21	-	-	-	C	19478891	A	C	19478891	2	2	232	1	0	0	0	0	0	0	0	1	17001	146	6	5		5	UBR4	1	19478891	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6588	19478891	229771730	33	15559										
UBR4	0	genome.wustl.edu	37	chr1	19480424	19480424	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggagaagtcttactgccAccattggaactgcagacaac	10	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19480424	19480424	A	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.6468	p.G2156	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	200	0	0	141	34	19.21	-	-	-	C	19480424	A	C	19480424	2	2	232	1	0	0	0	0	0	0	0	1	17001	146	6	5		5	UBR4	1	19480424	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1533	19480424	229770197	34	15560										
UBR4	0	genome.wustl.edu	37	chr1	19484465	19484465	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccgcacattctcaaaggcAccttcctgggaccctaaggt	8	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19484465	19484465	A	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.5604	p.G1868	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	230	0	0	145	18	10.91	-	-	-	C	19484465	A	C	19484465	2	2	232	1	0	0	0	0	0	0	0	1	17001	146	6	5		5	UBR4	1	19484465	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4041	19484465	229766156	35	15561										
UBR4	0	genome.wustl.edu	37	chr1	19499512	19499512	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagatcgcggcatcaagggTgtagatggactgcagactgg	16	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	19499512	19499512	T	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.3367	p.T1123P	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	180	1	0.55	158	20	11.24	-	-	-	G	19499512	T	G	19499512	3	3	232	1	0	0	0	0	1	0	0	0	17001	1696	59	5	12512	5	UBR4	1	19499512	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	15047	19499512	229751109	36	15562										
PLA2G2A	0	genome.wustl.edu	37	chr1	20302208	20302208	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggactcagcaacgaggggTgctccctctgcagtgtttat	14	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	20302208	20302208	T	G	SNP	PLA2G2A	ENST00000375111	human	ensembl	69_37n	-1	known	missense	c.421	p.T141P	0.000	superfamily_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2A	HGNC	ENSG00000188257	304	1	0.33	236	43	15.36	-	-	-	G	20302208	T	G	20302208	3	3	232	1	0	0	0	0	1	0	0	0	12069	1696	59	5	17	5	PLA2G2A	1	20302208	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	802696	20302208	228948413	37	15563										
ZBTB40	0	genome.wustl.edu	37	chr1	22816815	22816815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctcggttcagggtcaggTggtaagggatgtctctgcgc	16	9	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	22816815	22816815	T	G	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	missense	c.374	p.V125G	0.998	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	231	1	0.43	246	44	15.07	-	-	-	G	22816815	T	G	22816815	3	3	232	1	0	0	0	0	1	0	0	0	17638	1696	59	5	376	5	ZBTB40	1	22816815	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2514607	22816815	226433806	38	15564										
ZBTB40	0	genome.wustl.edu	37	chr1	22838211	22838211	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagaaggaaacgtggaaggTgagtaataaatttcaccttg	12	4	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	22838211	22838211	T	G	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	missense	c.2045	p.V682G	0.682	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	95	0	0	50	21	29.58	-	-	-	G	22838211	T	G	22838211	3	3	232	1	0	0	0	0	1	0	0	0	17638	1696	59	5	2083	5	ZBTB40	1	22838211	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	21396	22838211	226412410	39	15565										
C1QB	0	genome.wustl.edu	37	chr1	22987414	22987414	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccccatgggccctaaaggTggcccaggggcccctggagc	16	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	22987414	22987414	T	G	SNP	C1QB	ENST00000314933	human	ensembl	69_37n	1	known	silent	c.297	p.G99	0.004	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QB	HGNC	ENSG00000173369	227	2	0.87	195	32	13.91	-	-	-	G	22987414	T	G	22987414	2	3	232	1	0	0	0	0	0	0	0	1	1974	1683	59	5		5	C1QB	1	22987414	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	149203	22987414	226263207	40	15566										
KDM1A	0	genome.wustl.edu	37	chr1	23405610	23405610	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagccgttcagtttgtgccAcctctccctgagtggaaaac	9	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23405610	23405610	A	C	SNP	KDM1A	ENST00000542151	human	ensembl	69_37n	1	known	silent	c.1995	p.P665	0.010	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487	241	1	0.41	203	33	13.98	-	-	-	C	23405610	A	C	23405610	2	2	232	1	0	0	0	0	0	0	0	1	8176	146	6	5		5	KDM1A	1	23405610	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	418196	23405610	225845011	41	15567										
LUZP1	0	genome.wustl.edu	37	chr1	23418054	23418054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggggcactatggcttttccAcctgattgtctccgctggag	12	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23418054	23418054	A	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.2701	p.W901G	1.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	210	0	0	206	26	11.06	-	-	-	C	23418054	A	C	23418054	3	2	232	1	0	0	0	0	1	0	0	0	9152	159	6	5	537	5	LUZP1	1	23418054	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12444	23418054	225832567	42	15568										
LUZP1	0	genome.wustl.edu	37	chr1	23418278	23418278	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtgagctctgccagccccAcctggatattgctagtggat	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23418278	23418278	A	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.2477	p.V826G	0.997	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	165	0	0	126	24	16	-	-	-	C	23418278	A	C	23418278	3	2	232	1	0	0	0	0	1	0	0	0	9152	159	6	5	761	5	LUZP1	1	23418278	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	224	23418278	225832343	43	15569										
LUZP1	0	genome.wustl.edu	37	chr1	23419215	23419215	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggaacagatccatgggtggTgtcactaaacgttcgtgttg	14	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23419215	23419215	T	G	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.1540	p.T514P	0.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	315	0	0	265	37	12.13	-	-	-	G	23419215	T	G	23419215	3	3	232	1	0	0	0	0	1	0	0	0	9152	1696	59	5	1698	5	LUZP1	1	23419215	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	937	23419215	225831406	44	15570										
LUZP1	0	genome.wustl.edu	37	chr1	23419978	23419978	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctttaggtagtccagaccAcccttccttcttgattcttt	6	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23419978	23419978	A	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	silent	c.777	p.G259	0.006	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	196	0	0	135	38	21.97	-	-	-	C	23419978	A	C	23419978	2	2	232	1	0	0	0	0	0	0	0	1	9152	146	6	5		5	LUZP1	1	23419978	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	763	23419978	225830643	45	15571										
ZNF436	0	genome.wustl.edu	37	chr1	23689084	23689084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctctggtgctgagctaggTgagagctccggctgaagctt	14	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23689084	23689084	T	G	SNP	ZNF436	ENST00000314011	human	ensembl	69_37n	-1	known	missense	c.791	p.H264P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF436	HGNC	ENSG00000125945	132	0	0	129	18	12.24	-	-	-	G	23689084	T	G	23689084	3	3	232	1	0	0	0	0	1	0	0	0	18005	1696	59	5	625	5	ZNF436	1	23689084	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	269106	23689084	225561537	46	15572										
ASAP3	0	genome.wustl.edu	37	chr1	23762311	23762311	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggggaatatgttagacaggTgggttataagtggcccttgg	16	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23762311	23762311	T	G	SNP	ASAP3	ENST00000484418	human	ensembl	69_37n	-1	known	missense	c.364	p.T122P	0.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ASAP3	HGNC	ENSG00000088280	80	0	0	62	12	16.22	-	-	-	G	23762311	T	G	23762311	3	3	232	1	0	0	0	0	1	0	0	0	1016	1711	59	5		5	ASAP3	1	23762311	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	73227	23762311	225488310	47	15573										
ID3	0	genome.wustl.edu	37	chr1	23885718	23885718	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgacgcgctgtaggatttccAcctggctaagctgagtgcct	12	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	23885718	23885718	A	C	SNP	ID3	ENST00000374561	human	ensembl	69_37n	-1	known	missense	c.200	p.V67G	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ID3	HGNC	ENSG00000117318	48	0	0	82	16	16.33	-	-	-	C	23885718	A	C	23885718	3	2	232	1	0	0	0	0	1	0	0	0	7545	159	6	5	167	5	ID3	1	23885718	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	123407	23885718	225364903	48	15574										
HMGCL	0	genome.wustl.edu	37	chr1	24140474	24140474	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgctatcatggctagctggTaaactgacccaaaattcagg	9	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	24140474	24140474	T	G	SNP	HMGCL	ENST00000479458	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	HMGCL	HGNC	ENSG00000117305	28	0	0	27	12	30.77	-	-	-	G	24140474	T	G	24140474	1	3	232	0	1	0	0	0	0	0	0	0	7280	1653	57	5		5	HMGCL	1	24140474	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	254756	24140474	225110147	49	15575										
SRRM1	0	genome.wustl.edu	37	chr1	24993321	24993321	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttagtggtagacggaggagAagtccatccccaccacccac	10	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	24993321	24993321	A	C	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	missense	c.1680	p.R560S	0.999	NULL	pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	63	0	0	61	10	14.08	-	-	-	C	24993321	A	C	24993321	3	2	232	1	0	0	0	0	1	0	0	0	15259	243	9	5	1694	5	SRRM1	1	24993321	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	852847	24993321	224257300	50	15576										
ARID1A	0	genome.wustl.edu	37	chr1	27101596	27101596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtacctgcctcgcacatagcAcctgcccctgtgcagccccc	8	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	27101596	27101596	A	C	SNP	ARID1A	ENST00000532781	human	ensembl	69_37n	1	known	missense	c.236	p.H79P	0.991	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARID1A	HGNC	ENSG00000117713	122	1	0.8	113	24	17.52	-	-	-	C	27101596	A	C	27101596	3	2	232	1	0	0	0	0	1	0	0	0	915	146	6	5	4948	5	ARID1A	1	27101596	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2108275	27101596	222149025	51	15577										
ARID1A	0	genome.wustl.edu	37	chr1	27106702	27106702	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcccaggaccccttttccAccctgggccccaatgccgtc	8	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	27106702	27106702	A	C	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.6313	p.T2105P	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	226	2	0.87	205	34	14.17	-	-	-	C	27106702	A	C	27106702	3	2	232	1	0	0	0	0	1	0	0	0	915	159	6	5	6391	5	ARID1A	1	27106702	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5106	27106702	222143919	52	15578										
PIGV	0	genome.wustl.edu	37	chr1	27121571	27121571	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggacatacgtgaccactcAcccttggctctgccttacac	7	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	27121571	27121571	A	C	SNP	PIGV	ENST00000078527	human	ensembl	69_37n	1	known	missense	c.1046	p.H349P	1.000	pfam_GPI_Mannosyltransferase_2-like	pfam_GPI_Mannosyltransferase_2-like	-	no_errors	PIGV	HGNC	ENSG00000060642	76	0	0	50	15	22.73	-	-	-	C	27121571	A	C	27121571	3	2	232	1	0	0	0	0	1	0	0	0	11975	159	6	5	1052	5	PIGV	1	27121571	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14869	27121571	222129050	53	15579										
GPATCH3	0	genome.wustl.edu	37	chr1	27223829	27223829	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcttcctcttccttccccActtcttcctcaggctctcca	2	20	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	27223829	27223829	A	C	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.839	p.V280G	0.001	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	128	1	0.78	223	36	13.9	-	-	-	C	27223829	A	C	27223829	3	2	232	1	0	0	0	0	1	0	0	0	6642	159	6	5	762	5	GPATCH3	1	27223829	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	102258	27223829	222026792	54	15580										
XKR8	0	genome.wustl.edu	37	chr1	28293094	28293094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgcgcacctgcctccccTccaagccgctcctgggcctg	9	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	28293094	28293094	T	C	SNP	XKR8	ENST00000373884	human	ensembl	69_37n	1	known	missense	c.571	p.S191P	0.671	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR8	HGNC	ENSG00000158156	54	0	0	51	13	20	-	-	-	C	28293094	T	C	28293094	3	2	232	1	0	0	0	0	1	0	0	0	17534	1551	54	5	581	5	XKR8	1	28293094	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1069265	28293094	220957527	55	15581										
EYA3	0	genome.wustl.edu	37	chr1	28354403	28354403	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagatggagtctgaattaaAccactttcaggtttcatacc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	28354403	28354403	A	C	SNP	EYA3	ENST00000373871	human	ensembl	69_37n	-1	known	silent	c.396	p.G132	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161	234	0	0	183	33	15.28	-	-	-	C	28354403	A	C	28354403	2	2	232	1	0	0	0	0	0	0	0	1	5367	30	2	5		5	EYA3	1	28354403	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61309	28354403	220896218	56	15582	166	2								
EYA3	0	genome.wustl.edu	37	chr1	28354406	28354406	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatggagtctgaattaaaccActttcaggtttcatacctgg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	28354406	28354406	A	C	SNP	EYA3	ENST00000373871	human	ensembl	69_37n	-1	known	missense	c.393	p.S131R	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161	233	0	0	182	28	13.27	-	-	-	C	28354406	A	C	28354406	3	2	232	1	0	0	0	0	1	0	0	0	5367	156	6	5	1376	5	EYA3	1	28354406	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	28354406	220896215	57	15583	166	2								
PHACTR4	0	genome.wustl.edu	37	chr1	28792954	28792954	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgagaatgtacccaaaccAcctttacttcctcccaaaag	4	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	28792954	28792954	A	C	SNP	PHACTR4	ENST00000373836	human	ensembl	69_37n	1	known	silent	c.528	p.P176	0.971	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138	166	0	0	159	31	16.23	-	-	-	C	28792954	A	C	28792954	2	2	232	1	0	0	0	0	0	0	0	1	11886	146	6	5		5	PHACTR4	1	28792954	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	438548	28792954	220457667	58	15584										
FABP3	0	genome.wustl.edu	37	chr1	31842272	31842272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgttgtctcatcgaactccAcccccaacttaaagctgatc	5	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	31842272	31842272	A	C	SNP	FABP3	ENST00000373713	human	ensembl	69_37n	-1	known	missense	c.206	p.V69G	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP3	HGNC	ENSG00000121769	454	2	0.44	392	69	14.87	-	-	-	C	31842272	A	C	31842272	3	2	232	1	0	0	0	0	1	0	0	0	5398	159	6	5	207	5	FABP3	1	31842272	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3049318	31842272	217408349	59	15585										
COL16A1	0	genome.wustl.edu	37	chr1	32145098	32145098	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgccaccctgggaggcaggTaaacagaggagtgagaaatg	15	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	32145098	32145098	T	G	SNP	COL16A1	ENST00000373668	human	ensembl	69_37n	-1	putative	missense	c.2859	p.L953F	0.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	34	0	0	10	9	47.37	-	-	-	G	32145098	T	G	32145098	3	3	232	1	0	0	0	0	1	0	0	0	3703	1653	57	5		5	COL16A1	1	32145098	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	302826	32145098	217105523	60	15586										
YARS	0	genome.wustl.edu	37	chr1	33245839	33245839	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccgtggttcagcttcccccAcgtcaatcttctctacatac	5	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	33245839	33245839	A	C	SNP	YARS	ENST00000373477	human	ensembl	69_37n	-1	known	missense	c.1181	p.V394G	1.000	pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,pfscan_tRNA-bd_dom	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,pfscan_tRNA-bd_dom,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS	HGNC	ENSG00000134684	126	1	0.79	125	16	11.35	-	-	-	C	33245839	A	C	33245839	3	2	232	1	0	0	0	0	1	0	0	0	17564	159	6	5	417	5	YARS	1	33245839	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1100741	33245839	216004782	61	15587										
YARS	0	genome.wustl.edu	37	chr1	33272120	33272120	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaggccactcagcaaagggTgctccacctgctttaccacc	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	33272120	33272120	T	G	SNP	YARS	ENST00000373477	human	ensembl	69_37n	-1	known	missense	c.473	p.H158P	1.000	pfam_aa-tRNA-synth_Ic,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,pfscan_tRNA-bd_dom,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS	HGNC	ENSG00000134684	349	2	0.57	252	34	11.81	-	-	-	G	33272120	T	G	33272120	3	3	232	1	0	0	0	0	1	0	0	0	17564	1696	59	5	1153	5	YARS	1	33272120	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	26281	33272120	215978501	62	15588										
ADC	0	genome.wustl.edu	37	chr1	33585763	33585763	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgcgtgggccctgtcttcAccccagcgagcatcatgtga	12	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	33585763	33585763	A	C	SNP	ADC	ENST00000373441	human	ensembl	69_37n	1	known	missense	c.1423	p.T475P	1.000	NULL	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ADC	HGNC	ENSG00000142920	118	1	0.83	115	23	16.55	-	-	-	C	33585763	A	C	33585763	3	2	232	1	0	0	0	0	1	0	0	0	287	159	6	5	1397	5	ADC	1	33585763	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	313643	33585763	215664858	63	15589										
SFPQ	0	genome.wustl.edu	37	chr1	35650153	35650153	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcctctaggaccctgtccAcccacaggccccgcacctcc	6	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	35650153	35650153	A	C	SNP	SFPQ	ENST00000357214	human	ensembl	69_37n	-1	known	silent	c.2028	p.G676	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560	132	0	0	125	29	18.83	-	-	-	C	35650153	A	C	35650153	2	2	232	1	0	0	0	0	0	0	0	1	14248	146	6	5		5	SFPQ	1	35650153	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2064390	35650153	213600468	64	15590										
KIAA0319L	0	genome.wustl.edu	37	chr1	35972493	35972493	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttggaatttttttaaaaacAccagcatggaattggaggag	10	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	35972493	35972493	A	C	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.386	p.V129G	1.000	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	141	1	0.7	89	19	17.59	-	-	-	C	35972493	A	C	35972493	3	2	232	1	0	0	0	0	1	0	0	0	8221	159	6	5	2839	5	KIAA0319L	1	35972493	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	322340	35972493	213278128	65	15591										
MACF1	0	genome.wustl.edu	37	chr1	39799604	39799604	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggagaaagcttccaaaggTagagatgctgaaaaaacagt	11	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	39799604	39799604	T	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	silent	c.7455	p.G2485	0.990	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	175	0	0	100	20	16.53	-	-	-	G	39799604	T	G	39799604	2	3	232	1	0	0	0	0	0	0	0	1	9211	1625	57	5		5	MACF1	1	39799604	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3827111	39799604	209451017	66	15592										
TRIT1	0	genome.wustl.edu	37	chr1	40307387	40307387	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctgaactggatccccaccAcctttccaaaggccactgga	7	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	40307387	40307387	A	C	SNP	TRIT1	ENST00000462797	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIT1	HGNC	ENSG00000043514	275	1	0.36	257	33	11.34	-	-	-	C	40307387	A	C	40307387	1	2	232	0	1	0	0	0	0	0	0	0	16656	174	6	5		5	TRIT1	1	40307387	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	507783	40307387	208943234	67	15593										
MYCL1	0	genome.wustl.edu	37	chr1	40363333	40363333	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaactgacaggtttggggTggcaggactgggcagcctca	16	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	40363333	40363333	T	G	SNP	MYCL1	ENST00000372816	human	ensembl	69_37n	-1	known	missense	c.806	p.H269P	0.994	NULL	pfam_Tscrpt_reg_Myc_N,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYCL1	HGNC	ENSG00000116990	129	0	0	145	22	13.1	-	-	-	G	40363333	T	G	40363333	3	3	232	1	0	0	0	0	1	0	0	0	10092	1696	59	5	292	5	MYCL1	1	40363333	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	55946	40363333	208887288	68	15594										
MFSD2A	0	genome.wustl.edu	37	chr1	40424374	40424374	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcttctcctcattccaggTgggccctttctctgcctcca	7	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	40424374	40424374	T	G	SNP	MFSD2A	ENST00000372809	human	ensembl	69_37n	1	known	missense	c.269	p.V90G	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2A	HGNC	ENSG00000168389	329	0	0	272	34	11.07	-	-	-	G	40424374	T	G	40424374	3	3	232	1	0	0	0	0	1	0	0	0	9601	1710	59	5	279	5	MFSD2A	1	40424374	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	61041	40424374	208826247	69	15595										
SLFNL1	0	genome.wustl.edu	37	chr1	41481890	41481890	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttccagcttgcccagctccAccagccacctctgaggggac	9	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	41481890	41481890	A	C	SNP	SLFNL1	ENST00000302946	human	ensembl	69_37n	-1	known	missense	c.1112	p.V371G	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790	103	1	0.96	66	15	18.52	-	-	-	C	41481890	A	C	41481890	3	2	232	1	0	0	0	0	1	0	0	0	14827	159	6	5	115	5	SLFNL1	1	41481890	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1057516	41481890	207768731	70	15596										
FOXJ3	0	genome.wustl.edu	37	chr1	42657008	42657008	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgttgtgggggtgggggTgcctgatgtgttaacgtctg	18	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	42657008	42657008	T	G	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	silent	c.1317	p.A439	0.997	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	166	0	0	118	27	18.49	-	-	-	G	42657008	T	G	42657008	2	3	232	1	0	0	0	0	0	0	0	1	6061	1683	59	5		5	FOXJ3	1	42657008	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1175118	42657008	206593613	71	15597										
FOXJ3	0	genome.wustl.edu	37	chr1	42657155	42657155	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacgctgcggatgctgcggTaaaccatgcggtcgatgggg	17	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	42657155	42657155	T	G	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.1170	p.L390F	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	209	2	0.95	146	27	15.61	-	-	-	G	42657155	T	G	42657155	3	3	232	1	0	0	0	0	1	0	0	0	6061	1635	57	5	718	5	FOXJ3	1	42657155	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	147	42657155	206593466	72	15598										
FOXJ3	0	genome.wustl.edu	37	chr1	42660734	42660734	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgattctggatggcttgtcAcctaacattaaaagaaaaca	7	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	42660734	42660734	A	C	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.761	p.V254G	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	416	0	0	209	26	11.06	-	-	-	C	42660734	A	C	42660734	3	2	232	1	0	0	0	0	1	0	0	0	6061	173	6	5	1131	5	FOXJ3	1	42660734	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3579	42660734	206589887	73	15599										
ZNF691	0	genome.wustl.edu	37	chr1	43316934	43316934	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacctccaacctgagaacacAccagcggatccacactggtg	8	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	43316934	43316934	A	C	SNP	ZNF691	ENST00000397044	human	ensembl	69_37n	1	known	missense	c.398	p.H133P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011	286	0	0	263	42	13.77	-	-	-	C	43316934	A	C	43316934	3	2	232	1	0	0	0	0	1	0	0	0	18192	159	6	5	307	5	ZNF691	1	43316934	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	656200	43316934	205933687	74	15600										
EBNA1BP2	0	genome.wustl.edu	37	chr1	43632905	43632905	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgaagaacctccgtttgcAcctgtgatatgaacacaagg	9	10	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	43632905	43632905	A	C	SNP	EBNA1BP2	ENST00000431635	human	ensembl	69_37n	-1	known	missense	c.704	p.V235G	1.000	pfam_Ebp2	pfam_Ebp2	-	no_errors	EBNA1BP2	HGNC	ENSG00000117395	305	0	0	207	31	13.03	-	-	-	C	43632905	A	C	43632905	3	2	232	1	0	0	0	0	1	0	0	0	4920	173	6	5	397	5	EBNA1BP2	1	43632905	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	315971	43632905	205617716	75	15601										
WDR65	0	genome.wustl.edu	37	chr1	43675624	43675624	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccaggaacccagtcccacAcctgcctgctacgtgccttg	8	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	43675624	43675624	A	C	SNP	WDR65	ENST00000528956	human	ensembl	69_37n	1	known	missense	c.1966	p.T656P	0.008	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710	280	2	0.71	232	52	18.31	-	-	-	C	43675624	A	C	43675624	3	2	232	1	0	0	0	0	1	0	0	0	17413	159	6	5	2004	5	WDR65	1	43675624	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42719	43675624	205574997	76	15602										
TIE1	0	genome.wustl.edu	37	chr1	43783526	43783526	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggttgcctgtgtctaaatcAccactgtctgtctctttgcc	8	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	43783526	43783526	A	C	SNP	TIE1	ENST00000473014	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIE1	HGNC	ENSG00000066056	217	1	0.46	155	27	14.84	-	-	-	C	43783526	A	C	43783526	1	2	232	0	1	0	0	0	0	0	0	0	15988	174	6	5		5	TIE1	1	43783526	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	107902	43783526	205467095	77	15603										
MED8	0	genome.wustl.edu	37	chr1	43852650	43852650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcatggctgaaaacaggcAcccgtccttcagtctgccgc	9	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	43852650	43852650	A	C	SNP	MED8	ENST00000290663	human	ensembl	69_37n	-1	known	missense	c.290	p.V97G	0.999	pfam_Mediatior_Med8_fun/met	pfam_Mediatior_Med8_fun/met	-	no_errors	MED8	HGNC	ENSG00000159479	280	2	0.71	180	24	11.65	-	-	-	C	43852650	A	C	43852650	3	2	232	1	0	0	0	0	1	0	0	0	9524	159	6	5	639	5	MED8	1	43852650	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69124	43852650	205397971	78	15604										
PTPRF	0	genome.wustl.edu	37	chr1	44064415	44064415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcgggcctccgcggaaggTggaggtggagccactgaact	17	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	44064415	44064415	T	G	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.2144	p.V715G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	112	0	0	64	19	22.89	-	-	-	G	44064415	T	G	44064415	3	3	232	1	0	0	0	0	1	0	0	0	12884	1696	59	5	2186	5	PTPRF	1	44064415	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	211765	44064415	205186206	79	15605										
SLC6A9	0	genome.wustl.edu	37	chr1	44468025	44468025	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgttgtaggaagccatggTgatgaggcctccccacgcgc	13	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	44468025	44468025	T	G	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.1141	p.T381P	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	56	0	0	31	8	20	-	-	-	G	44468025	T	G	44468025	3	3	232	1	0	0	0	0	1	0	0	0	14780	1696	59	5	1007	5	SLC6A9	1	44468025	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	403610	44468025	204782596	80	15606										
RNF220	0	genome.wustl.edu	37	chr1	44878056	44878056	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccttctctactacacctccAccctcaatttgctcccccaa	1	21	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	44878056	44878056	A	C	SNP	RNF220	ENST00000355387	human	ensembl	69_37n	1	known	missense	c.287	p.H96P	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147	301	3	0.98	320	61	15.84	-	-	-	C	44878056	A	C	44878056	3	2	232	1	0	0	0	0	1	0	0	0	13569	159	6	5	289	5	RNF220	1	44878056	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	410031	44878056	204372565	81	15607										
PTCH2	0	genome.wustl.edu	37	chr1	45293789	45293789	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgaactgtggcagtgaggTgggcaatgcccactggtact	14	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	45293789	45293789	T	G	SNP	PTCH2	ENST00000372192	human	ensembl	69_37n	-1	known	missense	c.1784	p.H595P	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425	33	0	0	28	5	15.15	-	-	-	G	45293789	T	G	45293789	3	3	232	1	0	0	0	0	1	0	0	0	12811	1696	59	5	1883	5	PTCH2	1	45293789	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	415733	45293789	203956832	82	15608										
MMACHC	0	genome.wustl.edu	37	chr1	45974866	45974866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagccccagggtctcaccAcctgcatcccctggcccttg	8	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	45974866	45974866	A	C	SNP	MMACHC	ENST00000474382	human	ensembl	69_37n	1	known	missense	c.62	p.H21P	0.941	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	MMACHC	HGNC	ENSG00000132763	137	0	0	101	27	20.93	-	-	-	C	45974866	A	C	45974866	3	2	232	1	0	0	0	0	1	0	0	0	9712	146	6	5	842	5	MMACHC	1	45974866	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	681077	45974866	203275755	83	15609										
MAST2	0	genome.wustl.edu	37	chr1	46463447	46463447	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctccaaatgcacctgctcActtttcttttgttcctgccc	4	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	46463447	46463447	A	C	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.644	p.H215P	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	156	0	0	172	23	11.73	-	-	-	C	46463447	A	C	46463447	3	2	232	1	0	0	0	0	1	0	0	0	9396	159	6	5	666	5	MAST2	1	46463447	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	488581	46463447	202787174	84	15610										
MAST2	0	genome.wustl.edu	37	chr1	46487647	46487647	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaccctgaagagttctaccAccttttagaagcagctgagg	10	10	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	46487647	46487647	A	C	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.1316	p.H439P	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	205	0	0	232	66	21.85	-	-	-	C	46487647	A	C	46487647	3	2	232	1	0	0	0	0	1	0	0	0	9396	159	6	5	1362	5	MAST2	1	46487647	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24200	46487647	202762974	85	15611										
MAST2	0	genome.wustl.edu	37	chr1	46494512	46494512	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgggaagccagtggactggTgggccatgggcattatcctg	16	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	46494512	46494512	T	G	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.2125	p.W709G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	101	0	0	76	13	14.61	-	-	-	G	46494512	T	G	46494512	3	3	232	1	0	0	0	0	1	0	0	0	9396	1696	59	5	2195	5	MAST2	1	46494512	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6865	46494512	202756109	86	15612										
CYP4A11	0	genome.wustl.edu	37	chr1	47398486	47398486	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgttgagcagaacccggTgcaaaacggaaagggtcaaa	13	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	47398486	47398486	T	G	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	silent	c.1314	p.A438	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	401	4	0.99	317	53	14.29	-	-	-	G	47398486	T	G	47398486	2	3	232	1	0	0	0	0	0	0	0	1	4214	1683	59	5		5	CYP4A11	1	47398486	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	903974	47398486	201852135	87	15613										
CYP4A11	0	genome.wustl.edu	37	chr1	47398508	47398508	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaaacggaaagggtcaaacAcctgcagagagagcaccaga	11	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	47398508	47398508	A	C	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.1292	p.V431G	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	380	0	0	309	41	11.65	-	-	-	C	47398508	A	C	47398508	3	2	232	1	0	0	0	0	1	0	0	0	4214	173	6	5	278	5	CYP4A11	1	47398508	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	22	47398508	201852113	88	15614										
SLC5A9	0	genome.wustl.edu	37	chr1	48703472	48703472	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttacctggccccacccatcAccgctctcttcctgctggcc	7	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	48703472	48703472	A	C	SNP	SLC5A9	ENST00000236495	human	ensembl	69_37n	1	known	missense	c.1489	p.T497P	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	166	1	0.6	119	23	16.08	-	-	-	C	48703472	A	C	48703472	3	2	232	1	0	0	0	0	1	0	0	0	14761	159	6	5	1535	5	SLC5A9	1	48703472	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1304964	48703472	200547149	89	15615										
FAF1	0	genome.wustl.edu	37	chr1	51050413	51050413	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaatacttctccatcatccAccccaaattctgtagcatct	2	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	51050413	51050413	A	C	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	missense	c.911	p.V304G	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	143	1	0.69	94	27	22.31	-	-	-	C	51050413	A	C	51050413	3	2	232	1	0	0	0	0	1	0	0	0	5409	159	6	5	1081	5	FAF1	1	51050413	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2346941	51050413	198200208	90	15616										
LRP8	0	genome.wustl.edu	37	chr1	53728124	53728124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggcagggctcacccagggTgattccgttgggccattcaa	13	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	53728124	53728124	T	G	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.1768	p.T590P	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	196	2	0.99	149	41	21.35	-	-	-	G	53728124	T	G	53728124	3	3	232	1	0	0	0	0	1	0	0	0	9029	1696	59	5	1159	5	LRP8	1	53728124	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2677711	53728124	195522497	91	15617										
PCSK9	0	genome.wustl.edu	37	chr1	55512285	55512285	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacctggagcggattaccccTccacggtaccgggcggatga	13	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	55512285	55512285	T	C	SNP	PCSK9	ENST00000302118	human	ensembl	69_37n	1	known	silent	c.489	p.P163	0.000	superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174	39	0	0	36	6	14.29	-	-	-	C	55512285	T	C	55512285	2	2	232	1	0	0	0	0	0	0	0	1	11679	1538	54	5		5	PCSK9	1	55512285	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1784161	55512285	193738336	92	15618										
PRKAA2	0	genome.wustl.edu	37	chr1	57169877	57169877	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaccaagccagtgagttctAcctcgcctctagtcctccat	7	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	57169877	57169877	A	C	SNP	PRKAA2	ENST00000371244	human	ensembl	69_37n	1	known	missense	c.1022	p.Y341S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409	234	1	0.42	162	21	11.41	-	-	-	C	57169877	A	C	57169877	3	2	232	1	0	0	0	0	1	0	0	0	12575	391	14	5	1048	5	PRKAA2	1	57169877	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1657592	57169877	192080744	93	15619										
DOCK7	0	genome.wustl.edu	37	chr1	63003604	63003604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggtgatggagatgcaggTggagtaagtaagctgcaggg	19	3	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	63003604	63003604	T	G	SNP	DOCK7	ENST00000454575	human	ensembl	69_37n	-1	known	missense	c.943	p.T315P	0.922	NULL	pfam_DOCK,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK7	HGNC	ENSG00000116641	100	1	0.99	79	21	20.79	-	-	-	G	63003604	T	G	63003604	3	3	232	1	0	0	0	0	1	0	0	0	4727	1683	59	5	3085	5	DOCK7	1	63003604	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5833727	63003604	186247017	94	15620										
DOCK7	0	genome.wustl.edu	37	chr1	63018518	63018518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aattaaggcttgcaggtctcAccgcagatctagccattgtg	10	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	63018518	63018518	A	C	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.2651	p.V884G	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	169	1	0.59	95	25	20.83	-	-	-	C	63018518	A	C	63018518	3	2	232	1	0	0	0	0	1	0	0	0	4727	159	6	5	3790	5	DOCK7	1	63018518	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14914	63018518	186232103	95	15621										
DOCK7	0	genome.wustl.edu	37	chr1	63027333	63027333	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaacttcaacattaaaaacAcctttgtgattatctaccca	2	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	63027333	63027333	A	C	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	silent	c.2154	p.G718	0.938	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	134	0	0	69	18	20.69	-	-	-	C	63027333	A	C	63027333	2	2	232	1	0	0	0	0	0	0	0	1	4727	146	6	5		5	DOCK7	1	63027333	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8815	63027333	186223288	96	15622										
PGM1	0	genome.wustl.edu	37	chr1	64100599	64100599	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggactttggaggccaccAccctgaccccaacctcacct	9	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	64100599	64100599	A	C	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	1	known	missense	c.836	p.H279P	1.000	pfam_A-D-PHexomutase_a/b/a-II,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	220	1	0.45	187	42	18.34	-	-	-	C	64100599	A	C	64100599	3	2	232	1	0	0	0	0	1	0	0	0	11871	159	6	5	1104	5	PGM1	1	64100599	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1073266	64100599	185150022	97	15623										
PGM1	0	genome.wustl.edu	37	chr1	64125258	64125258	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctctatgtcttcctcaggTcatgttggccccccttattt	6	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	64125258	64125258	T	G	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	1	known	missense	c.1655	p.V552G	1.000	pfam_A-D-PHexomutase_C	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	113	0	0	90	19	17.43	-	-	-	G	64125258	T	G	64125258	3	3	232	1	0	0	0	0	1	0	0	0	11871	1681	58	5	1947	5	PGM1	1	64125258	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	24659	64125258	185125363	98	15624										
CACHD1	0	genome.wustl.edu	37	chr1	65047927	65047927	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagcatcctatacggctcAcctaacctctcccctaactg	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	65047927	65047927	A	C	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.350	p.H117P	1.000	pfam_VWA_N	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	127	0	0	83	21	20.19	-	-	-	C	65047927	A	C	65047927	3	2	232	1	0	0	0	0	1	0	0	0	2562	159	6	5	207	5	CACHD1	1	65047927	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	922669	65047927	184202694	99	15625										
JAK1	0	genome.wustl.edu	37	chr1	65325612	65325612	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgctgcaaagaggatggTaggagattacaggaaggcct	16	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	65325612	65325612	T	G	SNP	JAK1	ENST00000494904	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	JAK1	HGNC	ENSG00000162434	30	0	0	16	5	23.81	-	-	-	G	65325612	T	G	65325612	1	3	232	0	1	0	0	0	0	0	0	0	7991	1653	57	5		5	JAK1	1	65325612	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	277685	65325612	183925009	100	15626										
JAK1	0	genome.wustl.edu	37	chr1	65332736	65332736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaaggtagccaagtatttcAccttcaggtcatgcgtggac	10	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	65332736	65332736	A	C	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.803	p.V268G	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	314	1	0.32	225	33	12.79	-	-	-	C	65332736	A	C	65332736	3	2	232	1	0	0	0	0	1	0	0	0	7991	159	6	5	2737	5	JAK1	1	65332736	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7124	65332736	183917885	101	15627										
DNAJC6	0	genome.wustl.edu	37	chr1	65858515	65858515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacgccgctctgccacctccAcctctgcgtctccaacccta	5	22	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	65858515	65858515	A	C	SNP	DNAJC6	ENST00000371069	human	ensembl	69_37n	1	known	missense	c.1870	p.T624P	0.624	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DnaJ_N,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	DNAJC6	HGNC	ENSG00000116675	74	0	0	50	16	24.24	-	-	-	C	65858515	A	C	65858515	3	2	232	1	0	0	0	0	1	0	0	0	4688	159	6	5	1745	5	DNAJC6	1	65858515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	525779	65858515	183392106	102	15628										
SGIP1	0	genome.wustl.edu	37	chr1	67101647	67101647	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcccagcccacacgaaccAccctacaatagcaaagcaga	6	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	67101647	67101647	A	C	SNP	SGIP1	ENST00000371037	human	ensembl	69_37n	1	known	silent	c.120	p.P40	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	218	0	0	169	32	15.92	-	-	-	C	67101647	A	C	67101647	2	2	232	1	0	0	0	0	0	0	0	1	14294	146	6	5		5	SGIP1	1	67101647	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1243132	67101647	182148974	103	15629										
WLS	0	genome.wustl.edu	37	chr1	68619305	68619305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtcttcatggcaaaccacAccttggtgaagcctccattt	8	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	68619305	68619305	A	C	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.698	p.V233G	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	173	1	0.57	130	20	13.25	-	-	-	C	68619305	A	C	68619305	3	2	232	1	0	0	0	0	1	0	0	0	17473	159	6	5	1085	5	WLS	1	68619305	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1517658	68619305	180631316	104	15630										
LRRC7	0	genome.wustl.edu	37	chr1	70300497	70300497	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacacagctcctaaacctgAcccagctctacctgaatgac	5	16	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	70300497	70300497	A	C	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.421	p.T141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	205	1	0.49	134	23	14.56	-	-	-	C	70300497	A	C	70300497	3	2	232	1	0	0	0	0	1	0	0	0	9086	275	10	5	435	5	LRRC7	1	70300497	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1681192	70300497	178950124	105	15631										
NEGR1	0	genome.wustl.edu	37	chr1	72748151	72748151	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactggttcgagcaacaagcAccctgcaccaacagcatcat	7	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	72748151	72748151	A	C	SNP	NEGR1	ENST00000357731	human	ensembl	69_37n	-1	known	silent	c.27	p.G9	0.988	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NEGR1	HGNC	ENSG00000172260	58	0	0	28	10	26.32	-	-	-	C	72748151	A	C	72748151	2	2	232	1	0	0	0	0	0	0	0	1	10389	146	6	5		5	NEGR1	1	72748151	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2447654	72748151	176502470	106	15632										
C1orf173	0	genome.wustl.edu	37	chr1	75037161	75037161	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctggcacttcctccccActccgtgctaattcctctac	6	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	75037161	75037161	A	C	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.4233	p.S1411R	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	638	6	0.92	437	54	10.89	-	-	-	C	75037161	A	C	75037161	3	2	232	1	0	0	0	0	1	0	0	0	2033	156	6	5	363	5	C1orf173	1	75037161	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2289010	75037161	174213460	107	15633										
C1orf173	0	genome.wustl.edu	37	chr1	75055316	75055316	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcaacggccatacttaccAccttcctccaacccagggag	6	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	75055316	75055316	A	C	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	silent	c.2175	p.G725	0.947	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	507	0	0	310	54	14.84	-	-	-	C	75055316	A	C	75055316	2	2	232	1	0	0	0	0	0	0	0	1	2033	173	6	5		5	C1orf173	1	75055316	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18155	75055316	174195305	108	15634										
LHX8	0	genome.wustl.edu	37	chr1	75622661	75622661	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accccagtcacagcagtcccAccctccaggctgtctccacc	6	21	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	75622661	75622661	A	C	SNP	LHX8	ENST00000294638	human	ensembl	69_37n	1	known	silent	c.894	p.P298	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX8	HGNC	ENSG00000162624	317	0	0	198	49	19.68	-	-	-	C	75622661	A	C	75622661	2	2	232	1	0	0	0	0	0	0	0	1	8831	146	6	5		5	LHX8	1	75622661	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	567345	75622661	173627960	109	15635										
ST6GALNAC3	0	genome.wustl.edu	37	chr1	77093168	77093168	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcatatctcagcacagggTggtttaccttccttctggcc	9	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	77093168	77093168	T	G	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	69_37n	1	known	missense	c.655	p.W219G	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005	253	0	0	156	26	14.29	-	-	-	G	77093168	T	G	77093168	3	3	232	1	0	0	0	0	1	0	0	0	15316	1696	59	5	683	5	ST6GALNAC3	1	77093168	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1470507	77093168	172157453	110	15636										
DNAJB4	0	genome.wustl.edu	37	chr1	78478874	78478874	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctttggaagacgaatgggTggtggtagagattctgaaga	15	3	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	78478874	78478874	T	G	SNP	DNAJB4	ENST00000370763	human	ensembl	69_37n	1	known	silent	c.351	p.G117	0.985	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB4	HGNC	ENSG00000162616	269	1	0.37	180	37	16.89	-	-	-	G	78478874	T	G	78478874	2	3	232	1	0	0	0	0	0	0	0	1	4657	1683	59	5		5	DNAJB4	1	78478874	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1385706	78478874	170771747	111	15637										
LPHN2	0	genome.wustl.edu	37	chr1	82432276	82432276	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactgatcctgtgctttttAccctgccacacattgatgta	7	11	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	82432276	82432276	A	C	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.2320	p.T774P	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	199	1	0.5	154	38	19.69	-	-	-	C	82432276	A	C	82432276	3	2	232	1	0	0	0	0	1	0	0	0	8982	391	14	5	2319	5	LPHN2	1	82432276	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3953402	82432276	166818345	112	15638										
CTBS	0	genome.wustl.edu	37	chr1	85029438	85029438	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagacagattcaggcaggTataatcataaccataccaag	7	10	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	85029438	85029438	T	G	SNP	CTBS	ENST00000370630	human	ensembl	69_37n	-1	known	missense	c.775	p.T259P	0.172	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CTBS	HGNC	ENSG00000117151	162	1	0.61	65	13	16.67	-	-	-	G	85029438	T	G	85029438	3	3	232	1	0	0	0	0	1	0	0	0	4031	1638	57	5	394	5	CTBS	1	85029438	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2597162	85029438	164221183	113	15639										
ZNHIT6	0	genome.wustl.edu	37	chr1	86173876	86173876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctaagtcccttactcccTccctgccaggctctggactt	7	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	86173876	86173876	T	C	SNP	ZNHIT6	ENST00000370574	human	ensembl	69_37n	-1	known	missense	c.92	p.E31G	0.024	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT6	HGNC	ENSG00000117174	198	1	0.5	161	38	19.1	-	-	-	C	86173876	T	C	86173876	3	2	232	1	0	0	0	0	1	0	0	0	18302	1551	54	5	1360	5	ZNHIT6	1	86173876	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1144438	86173876	163076745	114	15640										
CLCA2	0	genome.wustl.edu	37	chr1	86921063	86921063	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccccaattctgatcctgtAcctgccagagattatcttat	5	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	86921063	86921063	A	C	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	silent	c.2685	p.V895	0.000	NULL	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	289	0	0	153	21	12.07	-	-	-	C	86921063	A	C	86921063	2	2	232	1	0	0	0	0	0	0	0	1	3488	378	14	5		5	CLCA2	1	86921063	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	747187	86921063	162329558	115	15641										
CLCA1	0	genome.wustl.edu	37	chr1	86952379	86952379	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacacactcgccaaaagattAcctgcagcagcttcaggagg	10	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	86952379	86952379	A	C	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	missense	c.1125	p.L375F	0.631	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	226	1	0.44	163	35	17.59	-	-	-	C	86952379	A	C	86952379	3	2	232	1	0	0	0	0	1	0	0	0	3487	388	14	5	1151	5	CLCA1	1	86952379	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	31316	86952379	162298242	116	15642										
CLCA1	0	genome.wustl.edu	37	chr1	86964397	86964397	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccatacctgatctcttcccAcctggccaaatcaccgacct	4	19	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	86964397	86964397	A	C	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	silent	c.2256	p.P752	0.962	superfamily_Fibronectin_type3,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	163	1	0.6	108	23	17.56	-	-	-	C	86964397	A	C	86964397	2	2	232	1	0	0	0	0	0	0	0	1	3487	146	6	5		5	CLCA1	1	86964397	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12018	86964397	162286224	117	15643										
CLCA4	0	genome.wustl.edu	37	chr1	87025640	87025640	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgactacagcttctacgtAcctgtttgaagccacagaaa	9	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	87025640	87025640	A	C	SNP	CLCA4	ENST00000370563	human	ensembl	69_37n	1	known	missense	c.185	p.Y62S	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602	504	0	0	356	63	15	-	-	-	C	87025640	A	C	87025640	3	2	232	1	0	0	0	0	1	0	0	0	3489	391	14	5	191	5	CLCA4	1	87025640	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61243	87025640	162224981	118	15644										
CLCA4	0	genome.wustl.edu	37	chr1	87025993	87025993	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggcgaatacattcacttcAcccctgaccttctacttgga	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	87025993	87025993	A	C	SNP	CLCA4	ENST00000370563	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602	255	1	0.39	193	26	11.87	-	-	-	C	87025993	A	C	87025993	3	2	232	1	0	0	0	0	1	0	0	0	3489	159	6	5	410	5	CLCA4	1	87025993	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	353	87025993	162224628	119	15645										
RBMXL1	0	genome.wustl.edu	37	chr1	89449114	89449114	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaaaattcatggaatatccAccatcatccatgtgtcctcc	4	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	89449114	89449114	A	C	SNP	RBMXL1	ENST00000321792	human	ensembl	69_37n	-1	known	silent	c.396	p.G132	0.500	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	163	1	0.61	117	20	14.6	-	-	-	C	89449114	A	C	89449114	2	2	232	1	0	0	0	0	0	0	0	1	13236	146	6	5		5	RBMXL1	1	89449114	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2423121	89449114	159801507	120	15646										
GBP2	0	genome.wustl.edu	37	chr1	89586870	89586870	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgtcgagcagaactagggTgtgttctggcttcttgggat	15	6	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	89586870	89586870	T	G	SNP	GBP2	ENST00000370466	human	ensembl	69_37n	-1	known	missense	c.274	p.T92P	0.230	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP2	HGNC	ENSG00000162645	315	2	0.62	215	54	20.07	-	-	-	G	89586870	T	G	89586870	3	3	232	1	0	0	0	0	1	0	0	0	6324	1696	59	5	1537	5	GBP2	1	89586870	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	137756	89586870	159663751	121	15647										
GBP7	0	genome.wustl.edu	37	chr1	89615102	89615102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtgtctgtggggaatctcActtgctgggccatctgctgg	15	9	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	89615102	89615102	A	C	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.1025	p.V342G	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	167	1	0.59	119	14	10.45	-	-	-	C	89615102	A	C	89615102	3	2	232	1	0	0	0	0	1	0	0	0	6329	159	6	5	911	5	GBP7	1	89615102	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28232	89615102	159635519	122	15648										
GBP4	0	genome.wustl.edu	37	chr1	89652748	89652748	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatggattcctctacaaccAcctgtgactgcaggaagttc	10	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	89652748	89652748	A	C	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.1448	p.V483G	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	188	1	0.53	180	32	14.95	-	-	-	C	89652748	A	C	89652748	3	2	232	1	0	0	0	0	1	0	0	0	6326	159	6	5	486	5	GBP4	1	89652748	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	37646	89652748	159597873	123	15649										
GBP6	0	genome.wustl.edu	37	chr1	89843750	89843750	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcatgagcaccatcaaccAccaggccctggagcagctgc	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	89843750	89843750	A	C	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	missense	c.407	p.H136P	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	148	0	0	128	26	16.77	-	-	-	C	89843750	A	C	89843750	3	2	232	1	0	0	0	0	1	0	0	0	6328	159	6	5	417	5	GBP6	1	89843750	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	191002	89843750	159406871	124	15650										
LRRC8C	0	genome.wustl.edu	37	chr1	90178515	90178515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtatgccaagtatttcccttAccttgtcctcatccataccc	4	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	90178515	90178515	A	C	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.386	p.Y129S	1.000	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	265	0	0	133	24	15.19	-	-	-	C	90178515	A	C	90178515	3	2	232	1	0	0	0	0	1	0	0	0	9089	391	14	5	392	5	LRRC8C	1	90178515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	334765	90178515	159072106	125	15651										
CCDC18	0	genome.wustl.edu	37	chr1	93721980	93721980	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggctgacccgggagcaggTgcagaactctcatacagaat	13	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	93721980	93721980	T	G	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	missense	c.3785	p.V1262G	0.931	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	223	0	0	151	20	11.7	-	-	-	G	93721980	T	G	93721980	3	3	232	1	0	0	0	0	1	0	0	0	2820	1696	59	5	3883	5	CCDC18	1	93721980	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3543465	93721980	155528641	126	15652										
BCAR3	0	genome.wustl.edu	37	chr1	94049601	94049601	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggtagctctctgactggTgggctttgagggacaaggct	16	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	94049601	94049601	T	G	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.1007	p.H336P	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	60	0	0	35	15	30	-	-	-	G	94049601	T	G	94049601	3	3	232	1	0	0	0	0	1	0	0	0	1353	1696	59	5	1498	5	BCAR3	1	94049601	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	327621	94049601	155201020	127	15653										
ABCA4	0	genome.wustl.edu	37	chr1	94543384	94543384	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggatggcttcagcagtaatAccttcttcaccaagctgcct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	94543384	94543384	A	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.1416	p.G472	0.007	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	471	4	0.84	252	54	17.53	-	-	-	C	94543384	A	C	94543384	2	2	232	1	0	0	0	0	0	0	0	1	34	378	14	5		5	ABCA4	1	94543384	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	493783	94543384	154707237	128	15654	167	2								
ABCA4	0	genome.wustl.edu	37	chr1	94543393	94543393	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcagtaataccttcttcAccaagctgcctattcaaaaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	94543393	94543393	A	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.1407	p.G469	0.996	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	464	2	0.43	254	49	16.07	-	-	-	C	94543393	A	C	94543393	2	2	232	1	0	0	0	0	0	0	0	1	34	146	6	5		5	ABCA4	1	94543393	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	94543393	154707228	129	15655	167	2								
PTBP2	0	genome.wustl.edu	37	chr1	97272423	97272423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgtggctccaaaaaaggTgtttatggagatgtgcagcg	13	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	97272423	97272423	T	G	SNP	PTBP2	ENST00000541987	human	ensembl	69_37n	1	known	missense	c.953	p.V318G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP2	HGNC	ENSG00000117569	135	0	0	104	22	17.46	-	-	-	G	97272423	T	G	97272423	3	3	232	1	0	0	0	0	1	0	0	0	12806	1710	59	5	1122	5	PTBP2	1	97272423	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2729030	97272423	151978198	130	15656										
DPYD	0	genome.wustl.edu	37	chr1	98015203	98015203	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaaaccaacgacatcaccAcctgcaaatacccatgcttc	4	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	98015203	98015203	A	C	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	silent	c.1437	p.G479	0.675	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	186	1	0.53	115	22	15.94	-	-	-	C	98015203	A	C	98015203	2	2	232	1	0	0	0	0	0	0	0	1	4780	146	6	5		5	DPYD	1	98015203	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	742780	98015203	151235418	131	15657										
LPPR4	0	genome.wustl.edu	37	chr1	99771737	99771737	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctcagagccatcgagggTaggggtgaatggagaccacc	15	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	99771737	99771737	T	G	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	missense	c.1463	p.V488G	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	300	0	0	133	27	16.88	-	-	-	G	99771737	T	G	99771737	3	3	232	1	0	0	0	0	1	0	0	0	8993	1638	57	5	1489	5	LPPR4	1	99771737	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1756534	99771737	149478884	132	15658										
LPPR4	0	genome.wustl.edu	37	chr1	99771910	99771910	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agactcaggaaaacataagcAcctcccccaaaagcagctct	6	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	99771910	99771910	A	C	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	missense	c.1636	p.T546P	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	283	1	0.35	135	29	17.68	-	-	-	C	99771910	A	C	99771910	3	2	232	1	0	0	0	0	1	0	0	0	8993	159	6	5	1662	5	LPPR4	1	99771910	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	173	99771910	149478711	133	15659										
SASS6	0	genome.wustl.edu	37	chr1	100568530	100568530	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttgttcctgaaccagggTggctggtatttttggcagat	12	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	100568530	100568530	T	G	SNP	SASS6	ENST00000287482	human	ensembl	69_37n	-1	known	missense	c.1655	p.H552P	0.721	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876	137	1	0.72	78	25	24.27	-	-	-	G	100568530	T	G	100568530	3	3	232	1	0	0	0	0	1	0	0	0	13937	1696	59	5	334	5	SASS6	1	100568530	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	796620	100568530	148682091	134	15660										
CDC14A	0	genome.wustl.edu	37	chr1	100964771	100964771	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcctccgaccctcctacAccgggctttcttcttcttca	4	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	100964771	100964771	A	C	SNP	CDC14A	ENST00000361544	human	ensembl	69_37n	1	known	missense	c.1708	p.T570P	0.351	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335	315	0	0	184	22	10.53	-	-	-	C	100964771	A	C	100964771	3	2	232	1	0	0	0	0	1	0	0	0	3085	159	6	5	1781	5	CDC14A	1	100964771	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	396241	100964771	148285850	135	15661										
VCAM1	0	genome.wustl.edu	37	chr1	101194810	101194810	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccctctgagcgggaaggTgaggagtgaggggaccaatt	17	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	101194810	101194810	T	G	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.1076	p.V359G	0.404	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	133	1	0.74	99	20	16.67	-	-	-	G	101194810	T	G	101194810	3	3	232	1	0	0	0	0	1	0	0	0	17234	1696	59	5	1094	5	VCAM1	1	101194810	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	230039	101194810	148055811	136	15662										
OLFM3	0	genome.wustl.edu	37	chr1	102270205	102270205	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtcgatgtcagagaatccAccccatgtgtaggggtaaac	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	102270205	102270205	A	C	SNP	OLFM3	ENST00000338858	human	ensembl	69_37n	-1	known	silent	c.1026	p.G342	0.996	pfam_Olfac-like,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM3	HGNC	ENSG00000118733	166	0	0	115	24	17.27	-	-	-	C	102270205	A	C	102270205	2	2	232	1	0	0	0	0	0	0	0	1	10927	146	6	5		5	OLFM3	1	102270205	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1075395	102270205	146980416	137	15663										
AMY2B	0	genome.wustl.edu	37	chr1	104116940	104116940	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctactttggaaatggccgggTgacagaattcaagtatggtg	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	104116940	104116940	T	G	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	missense	c.803	p.V268G	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	315	1	0.32	138	44	24.18	-	-	-	G	104116940	T	G	104116940	3	3	232	1	0	0	0	0	1	0	0	0	595	1696	59	5	821	5	AMY2B	1	104116940	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1846735	104116940	145133681	138	15664										
AMY2B	0	genome.wustl.edu	37	chr1	104120067	104120067	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttaaaggagaaggaagaggTaaatatatgtatgttaaaat	10	0	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	104120067	104120067	T	G	SNP	AMY2B	ENST00000481821	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038	557	5	0.88	325	50	13.3	-	-	-	G	104120067	T	G	104120067	1	3	232	0	1	0	0	0	0	0	0	0	595	1653	57	5		5	AMY2B	1	104120067	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3127	104120067	145130554	139	15665										
FAM102B	0	genome.wustl.edu	37	chr1	109171358	109171358	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgagttgatgacaccagggTggatgcagatgacattgtag	15	6	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109171358	109171358	T	G	SNP	FAM102B	ENST00000370035	human	ensembl	69_37n	1	known	missense	c.902	p.V301G	1.000	NULL	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636	102	0	0	69	19	21.59	-	-	-	G	109171358	T	G	109171358	3	3	232	1	0	0	0	0	1	0	0	0	5423	1696	59	5	936	5	FAM102B	1	109171358	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5051291	109171358	140079263	140	15666										
PRPF38B	0	genome.wustl.edu	37	chr1	109242444	109242444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcaaggaagaactgacagTgttgaaaaatcaaaaaaacg	9	5	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109242444	109242444	T	G	SNP	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	missense	c.1443	p.S481R	1.000	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	695	0	0	427	62	12.6	-	-	-	G	109242444	T	G	109242444	3	3	232	1	0	0	0	0	1	0	0	0	12649	1693	59	5	1465	5	PRPF38B	1	109242444	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	71086	109242444	140008177	141	15667										
WDR47	0	genome.wustl.edu	37	chr1	109514140	109514140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgccatctgcactgaatcActttgtccttgtgctccccc	7	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109514140	109514140	A	C	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.2696	p.V899G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	108	1	0.92	127	19	13.01	-	-	-	C	109514140	A	C	109514140	3	2	232	1	0	0	0	0	1	0	0	0	17397	159	6	5	91	5	WDR47	1	109514140	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	271696	109514140	139736481	142	15668										
WDR47	0	genome.wustl.edu	37	chr1	109553707	109553707	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgactggttagtccacaggTgaggccatctaaagcaggat	12	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109553707	109553707	T	G	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.982	p.T328P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	317	1	0.31	252	31	10.8	-	-	-	G	109553707	T	G	109553707	3	3	232	1	0	0	0	0	1	0	0	0	17397	1696	59	5	1845	5	WDR47	1	109553707	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	39567	109553707	139696914	143	15669										
KIAA1324	0	genome.wustl.edu	37	chr1	109740604	109740604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagctctaatttggcaggggTgacaacagatatgactctgg	13	7	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109740604	109740604	T	G	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	missense	c.2306	p.V769G	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	102	1	0.97	48	14	22.58	-	-	-	G	109740604	T	G	109740604	3	3	232	1	0	0	0	0	1	0	0	0	8275	1696	59	5	2372	5	KIAA1324	1	109740604	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	186897	109740604	139510017	144	15670										
MYBPHL	0	genome.wustl.edu	37	chr1	109840084	109840084	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggcggtggcctccagcccAcccagctgcacgcggagttg	15	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109840084	109840084	A	C	SNP	MYBPHL	ENST00000357155	human	ensembl	69_37n	-1	known	silent	c.390	p.G130	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPHL	HGNC	ENSG00000221986	69	0	0	38	10	19.61	-	-	-	C	109840084	A	C	109840084	2	2	232	1	0	0	0	0	0	0	0	1	10087	146	6	5		5	MYBPHL	1	109840084	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	99480	109840084	139410537	145	15671										
SORT1	0	genome.wustl.edu	37	chr1	109878924	109878924	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcttcctcaggtgcgtccAccttcctccttggtcaaaag	9	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	109878924	109878924	A	C	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	missense	c.1309	p.W437G	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	120	0	0	124	21	14.38	-	-	-	C	109878924	A	C	109878924	3	2	232	1	0	0	0	0	1	0	0	0	15024	159	6	5	1226	5	SORT1	1	109878924	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38840	109878924	139371697	146	15672										
GSTM5	0	genome.wustl.edu	37	chr1	110256068	110256068	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggatgctggggagcctggTggcccaactgagcttccccg	17	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	110256068	110256068	T	G	SNP	GSTM5	ENST00000369812	human	ensembl	69_37n	1	known	missense	c.197	p.V66G	0.001	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM5	HGNC	ENSG00000134201	109	0	0	110	16	12.7	-	-	-	G	110256068	T	G	110256068	3	3	232	1	0	0	0	0	1	0	0	0	6892	1711	59	5		5	GSTM5	1	110256068	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	377144	110256068	138994553	147	15673										
EPS8L3	0	genome.wustl.edu	37	chr1	110294721	110294721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggcaggtttggggctggAgggcctggagttggggtccc	21	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	110294721	110294721	A	G	SNP	EPS8L3	ENST00000369805	human	ensembl	69_37n	-1	known	missense	c.1333	p.S445P	0.003	superfamily_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758	113	0	0	68	11	13.92	-	-	-	G	110294721	A	G	110294721	3	3	232	1	0	0	0	0	1	0	0	0	5234	304	11	5	471	5	EPS8L3	1	110294721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38653	110294721	138955900	148	15674										
KCNA10	0	genome.wustl.edu	37	chr1	111060119	111060119	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacaatcttcccccctggggTggtcgggcacatgtccccat	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	111060119	111060119	T	G	SNP	KCNA10	ENST00000369771	human	ensembl	69_37n	-1	known	missense	c.1291	p.T431P	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105	99	0	0	72	17	18.89	-	-	-	G	111060119	T	G	111060119	3	3	232	1	0	0	0	0	1	0	0	0	8056	1696	59	5	248	5	KCNA10	1	111060119	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	765398	111060119	138190502	149	15675										
KCND3	0	genome.wustl.edu	37	chr1	112319781	112319781	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actacgacgggagcagcaggTggtagtgaggcctgggtggc	19	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	112319781	112319781	T	G	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	missense	c.1633	p.T545P	1.000	pfam_K_chnl_volt-dep_Kv4_C	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	126	1	0.79	77	21	21.43	-	-	-	G	112319781	T	G	112319781	3	3	232	1	0	0	0	0	1	0	0	0	8074	1696	59	5	342	5	KCND3	1	112319781	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1259662	112319781	136930840	150	15676										
MOV10	0	genome.wustl.edu	37	chr1	113241338	113241338	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgtcccctccttccaggTggagaaaatccgttactgca	8	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	113241338	113241338	T	G	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.2510	p.V837G	1.000	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	328	3	0.9	291	36	10.91	-	-	-	G	113241338	T	G	113241338	3	3	232	1	0	0	0	0	1	0	0	0	9790	1710	59	5	2572	5	MOV10	1	113241338	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	921557	113241338	136009283	151	15677										
PPM1J	0	genome.wustl.edu	37	chr1	113253404	113253404	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagggcttgatgggcagggTggaactgcagaccttaaggc	16	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	113253404	113253404	T	G	SNP	PPM1J	ENST00000309276	human	ensembl	69_37n	-1	known	missense	c.1180	p.T394P	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1J	HGNC	ENSG00000155367	102	1	0.97	57	17	22.97	-	-	-	G	113253404	T	G	113253404	3	3	232	1	0	0	0	0	1	0	0	0	12419	1696	59	5	349	5	PPM1J	1	113253404	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12066	113253404	135997217	152	15678										
MAGI3	0	genome.wustl.edu	37	chr1	114196630	114196630	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacctccaaaaacaaaccAcctccaggaggtaagggcta	7	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	114196630	114196630	A	C	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	silent	c.2619	p.P873	0.321	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	280	2	0.7	133	46	25.7	-	-	-	C	114196630	A	C	114196630	2	2	232	1	0	0	0	0	0	0	0	1	9263	146	6	5		5	MAGI3	1	114196630	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	943226	114196630	135053991	153	15679										
CD2	0	genome.wustl.edu	37	chr1	117311360	117311360	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcgagttcagccaaaaccTccccatggggcagcagaaaa	9	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	117311360	117311360	T	C	SNP	CD2	ENST00000369478	human	ensembl	69_37n	1	known	silent	c.1011	p.P337	0.112	NULL	pfam_Ig_C2-set,pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	-	no_errors	CD2	HGNC	ENSG00000116824	149	0	0	769	87	10.09	-	-	-	C	117311360	T	C	117311360	2	2	232	1	0	0	0	0	0	0	0	1	3008	1538	54	5		5	CD2	1	117311360	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3114730	117311360	131939261	154	15680										
PHGDH	0	genome.wustl.edu	37	chr1	120286656	120286656	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactgaagccttccagttccActtctaaccttggagctcac	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	120286656	120286656	A	C	SNP	PHGDH	ENST00000369409	human	ensembl	69_37n	1	known	missense	c.1595	p.H532P	0.012	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	-	no_errors	PHGDH	HGNC	ENSG00000092621	182	0	0	216	32	12.9	-	-	-	C	120286656	A	C	120286656	3	2	232	1	0	0	0	0	1	0	0	0	11915	159	6	5	1641	5	PHGDH	1	120286656	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2975296	120286656	128963965	155	15681										
NOTCH2	0	genome.wustl.edu	37	chr1	120458282	120458282	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctggggcatcatggcagTggggaaagccacactgggca	16	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	120458282	120458282	T	G	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.7063	p.T2355P	0.002	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	137	1	0.72	331	48	12.6	-	-	-	G	120458282	T	G	120458282	3	3	232	1	0	0	0	0	1	0	0	0	10620	1696	59	5	356	5	NOTCH2	1	120458282	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	171626	120458282	128792339	156	15682										
PDE4DIP	0	genome.wustl.edu	37	chr1	144952330	144952330	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacactccttctctgcttccAccagagctgccatccgcgca	6	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	144952330	144952330	A	C	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.389	p.V130G	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	118	0	0	227	76	25	-	-	-	C	144952330	A	C	144952330	3	2	232	1	0	0	0	0	1	0	0	0	11716	159	6	5	7958	5	PDE4DIP	1	144952330	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24494048	144952330	104298291	157	15683										
ITGA10	0	genome.wustl.edu	37	chr1	145537756	145537756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagagagcccaataaaggTggaatgtgccgccccttctg	13	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	145537756	145537756	T	G	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.2594	p.V865G	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	168	0	0	199	43	17.7	-	-	-	G	145537756	T	G	145537756	3	3	232	1	0	0	0	0	1	0	0	0	7927	1696	59	5	2676	5	ITGA10	1	145537756	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	585426	145537756	103712865	158	15684										
ITGA10	0	genome.wustl.edu	37	chr1	145538292	145538292	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacatccaatatgagccccAcctcctgttctctaggtatg	6	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	145538292	145538292	A	C	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.2819	p.H940P	0.850	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	224	2	0.88	296	52	14.86	-	-	-	C	145538292	A	C	145538292	3	2	232	1	0	0	0	0	1	0	0	0	7927	159	6	5	2909	5	ITGA10	1	145538292	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	536	145538292	103712329	159	15685										
ANKRD35	0	genome.wustl.edu	37	chr1	145555794	145555794	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggaaatctgcccgacccAccaagcttgactcgaatggc	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	145555794	145555794	A	C	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	missense	c.142	p.T48P	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	54	0	0	81	14	14.74	-	-	-	C	145555794	A	C	145555794	3	2	232	1	0	0	0	0	1	0	0	0	663	159	6	5	148	5	ANKRD35	1	145555794	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17502	145555794	103694827	160	15686										
PDZK1	0	genome.wustl.edu	37	chr1	145748518	145748518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggaggtgtgcaaacttggAcccagccccggctctgctat	12	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	145748518	145748518	A	C	SNP	PDZK1	ENST00000344770	human	ensembl	69_37n	1	known	missense	c.391	p.T131P	0.002	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZK1	HGNC	ENSG00000174827	54	0	0	130	22	14.38	-	-	-	C	145748518	A	C	145748518	3	2	232	1	0	0	0	0	1	0	0	0	11780	275	10	5	397	5	PDZK1	1	145748518	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	192724	145748518	103502103	161	15687										
BCL9	0	genome.wustl.edu	37	chr1	147091302	147091302	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccagatgaaatggttccAccttctatgaactcccagtc	6	13	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	147091302	147091302	A	C	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	silent	c.1341	p.P447	0.907	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	170	0	0	174	24	12.12	-	-	-	C	147091302	A	C	147091302	2	2	232	1	0	0	0	0	0	0	0	1	1385	146	6	5		5	BCL9	1	147091302	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1342784	147091302	102159319	162	15688										
BCL9	0	genome.wustl.edu	37	chr1	147092751	147092751	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcacttcctgccccgtcAcctggatggacctcttctcc	6	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	147092751	147092751	A	C	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	silent	c.2790	p.S930	0.928	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	207	0	0	243	28	10.22	-	-	-	C	147092751	A	C	147092751	2	2	232	1	0	0	0	0	0	0	0	1	1385	146	6	5		5	BCL9	1	147092751	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1449	147092751	102157870	163	15689										
ACP6	0	genome.wustl.edu	37	chr1	147126385	147126385	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatgcccatcctgtccttcAcctttttcaaatcctctgag	4	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	147126385	147126385	A	C	SNP	ACP6	ENST00000369238	human	ensembl	69_37n	-1	known	missense	c.704	p.V235G	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP6	HGNC	ENSG00000162836	138	0	0	120	21	14.89	-	-	-	C	147126385	A	C	147126385	3	2	232	1	0	0	0	0	1	0	0	0	165	159	6	5	602	5	ACP6	1	147126385	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	33634	147126385	102124236	164	15690										
MTMR11	0	genome.wustl.edu	37	chr1	149906418	149906418	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttggacaatggccatggtcAcctgcagaggaaaggacatt	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	149906418	149906418	A	C	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.470	p.V157G	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	166	1	0.59	202	25	10.96	-	-	-	C	149906418	A	C	149906418	3	2	232	1	0	0	0	0	1	0	0	0	10012	173	6	5	1746	5	MTMR11	1	149906418	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2780033	149906418	99344203	165	15691										
OTUD7B	0	genome.wustl.edu	37	chr1	149939361	149939361	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtgctcattgctccccccAcccccaccattggaggagac	10	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	149939361	149939361	A	C	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	silent	c.360	p.G120	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	89	0	0	124	26	17.33	-	-	-	C	149939361	A	C	149939361	2	2	232	1	0	0	0	0	0	0	0	1	11392	146	6	5		5	OTUD7B	1	149939361	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32943	149939361	99311260	166	15692										
C1orf51	0	genome.wustl.edu	37	chr1	150259147	150259147	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccaaccaccccagtcccAcctactacagcatctcctgt	4	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	150259147	150259147	A	C	SNP	C1orf51	ENST00000290363	human	ensembl	69_37n	1	known	silent	c.939	p.P313	0.006	NULL	NULL	-	no_errors	C1orf51	HGNC	ENSG00000159208	456	1	0.22	611	84	12.09	-	-	-	C	150259147	A	C	150259147	2	2	232	1	0	0	0	0	0	0	0	1	2063	146	6	5		5	C1orf51	1	150259147	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	319786	150259147	98991474	167	15693										
RPRD2	0	genome.wustl.edu	37	chr1	150443734	150443734	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagcagtacaagatcaccAccccctgggagagatgaaag	10	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	150443734	150443734	A	C	SNP	RPRD2	ENST00000369068	human	ensembl	69_37n	1	known	silent	c.2310	p.P770	0.995	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	109	0	0	205	44	17.67	-	-	-	C	150443734	A	C	150443734	2	2	232	1	0	0	0	0	0	0	0	1	13703	146	6	5		5	RPRD2	1	150443734	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	184587	150443734	98806887	168	15694										
ECM1	0	genome.wustl.edu	37	chr1	150482611	150482611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctcaggaagctgtcccccTccaaaaagagctgccctctc	7	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	150482611	150482611	T	C	SNP	ECM1	ENST00000369049	human	ensembl	69_37n	1	known	missense	c.419	p.L140P	0.002	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369	368	0	0	632	71	10.03	-	-	-	C	150482611	T	C	150482611	3	2	232	1	0	0	0	0	1	0	0	0	4932	1551	54	5	356	5	ECM1	1	150482611	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	38877	150482611	98768010	169	15695										
SETDB1	0	genome.wustl.edu	37	chr1	150935494	150935494	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagaaagtgagggggaaagTgggaccagccgaaagcccac	15	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	150935494	150935494	T	G	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.3336	p.S1112R	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	95	0	0	192	31	13.9	-	-	-	G	150935494	T	G	150935494	3	3	232	1	0	0	0	0	1	0	0	0	14226	1693	59	5	3406	5	SETDB1	1	150935494	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	452883	150935494	98315127	170	15696										
TMOD4	0	genome.wustl.edu	37	chr1	151143933	151143933	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaatggggtcaccactcctCgtggctaccagactgaagct	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	151143933	151143933	C	T	SNP	TMOD4	ENST00000295314	human	ensembl	69_37n	-1	known	silent	c.702	p.T234	0.534	NULL	pfam_Tropomodulin	-	no_errors	TMOD4	HGNC	ENSG00000163157	156	0	0	316	47	12.91	-	-	-	T	151143933	C	T	151143933	2	4	232	1	0	0	0	0	0	0	0	1	16331	871	31	1		1	TMOD4	1	151143933	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	208439	151143933	98106688	171	15697										
TUFT1	0	genome.wustl.edu	37	chr1	151534602	151534602	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaggctgactctccagggTgaactgacaggagatgaact	12	10	2	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	151534602	151534602	T	G	SNP	TUFT1	ENST00000538902	human	ensembl	69_37n	1	known	silent	c.153	p.G51	0.970	NULL	superfamily_Prefoldin	-	no_errors	TUFT1	HGNC	ENSG00000143367	107	0	0	213	33	13.41	-	-	-	G	151534602	T	G	151534602	2	3	232	1	0	0	0	0	0	0	0	1	16869	1683	59	5		5	TUFT1	1	151534602	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	390669	151534602	97716019	172	15698										
LINGO4	0	genome.wustl.edu	37	chr1	151773670	151773670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtgccgtttggtggttccAcctggatgacttccagccag	13	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	151773670	151773670	A	C	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	missense	c.1511	p.V504G	0.428	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	202	0	0	239	32	11.72	-	-	-	C	151773670	A	C	151773670	3	2	232	1	0	0	0	0	1	0	0	0	8873	159	6	5	274	5	LINGO4	1	151773670	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	239068	151773670	97476951	173	15699										
RORC	0	genome.wustl.edu	37	chr1	151785948	151785948	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgtccccaggcctgcccAcccatccctgggcacctgct	8	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	151785948	151785948	A	C	SNP	RORC	ENST00000480719	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RORC	HGNC	ENSG00000143365	111	1	0.89	129	20	13.42	-	-	-	C	151785948	A	C	151785948	1	2	232	0	1	0	0	0	0	0	0	0	13616	174	6	5		5	RORC	1	151785948	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12278	151785948	97464673	174	15700										
HRNR	0	genome.wustl.edu	37	chr1	152187862	152187862	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagccagacccatgtcggccAtagctgggagactgccttga	13	12	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	152187862	152187862	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.6243	p.Y2081	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	86	0	0	76	16	17.02	-	-	-	G	152187862	A	G	152187862	2	3	232	1	0	0	0	0	0	0	0	1	7410	224	8	5		5	HRNR	1	152187862	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	401914	152187862	97062759	175	15701										
FLG	0	genome.wustl.edu	37	chr1	152285554	152285554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgatgattgtccctggcccAcctgtgagtgtctagagctg	12	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	152285554	152285554	A	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.1808	p.V603G	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	267	1	0.37	365	41	10	-	-	-	C	152285554	A	C	152285554	3	2	232	1	0	0	0	0	1	0	0	0	5968	159	6	5	10381	5	FLG	1	152285554	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	97692	152285554	96965067	176	15702										
FLG2	0	genome.wustl.edu	37	chr1	152323138	152323138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctgttgaccatgaaaggTgagaattactgatgcttttt	10	5	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	152323138	152323138	T	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.7124	p.H2375P	0.076	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	267	1	0.37	257	55	17.63	-	-	-	G	152323138	T	G	152323138	3	3	232	1	0	0	0	0	1	0	0	0	5969	1696	59	5	55	5	FLG2	1	152323138	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	37584	152323138	96927483	177	15703										
FLG2	0	genome.wustl.edu	37	chr1	152326471	152326471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagatcttcgtcttctagttAccctggaccctgtctgtgtg	9	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	152326471	152326471	A	C	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.3791	p.V1264G	0.000	prints_Filaggrin	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	373	3	0.8	374	47	11.11	-	-	-	C	152326471	A	C	152326471	3	2	232	1	0	0	0	0	1	0	0	0	5969	391	14	5	3388	5	FLG2	1	152326471	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3333	152326471	96924150	178	15704										
LCE3D	0	genome.wustl.edu	37	chr1	152552374	152552374	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgggtgagggacacttgggTgggggttggcactgctgctg	20	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	152552374	152552374	T	G	SNP	LCE3D	ENST00000368787	human	ensembl	69_37n	-1	known	silent	c.39	p.P13	0.996	NULL	NULL	-	no_errors	LCE3D	HGNC	ENSG00000163202	186	0	0	228	42	15.5	-	-	-	G	152552374	T	G	152552374	2	3	232	1	0	0	0	0	0	0	0	1	8726	1683	59	5		5	LCE3D	1	152552374	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	225903	152552374	96698247	179	15705										
LELP1	0	genome.wustl.edu	37	chr1	153177406	153177406	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgccctccccagccctgcAccaagccctgtcctcctaaa	5	22	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	153177406	153177406	A	C	SNP	LELP1	ENST00000368747	human	ensembl	69_37n	1	known	missense	c.223	p.T75P	0.000	NULL	NULL	-	no_errors	LELP1	HGNC	ENSG00000203784	118	1	0.84	200	26	11.3	-	-	-	C	153177406	A	C	153177406	3	2	232	1	0	0	0	0	1	0	0	0	8772	159	6	5	225	5	LELP1	1	153177406	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	625032	153177406	96073215	180	15706										
S100A1	0	genome.wustl.edu	37	chr1	153604391	153604391	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttccccctgcttccacctcAccccacttatccctctccat	1	23	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	153604391	153604391	A	C	SNP	S100A1	ENST00000469893	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A1	HGNC	ENSG00000160678	57	0	0	69	24	25.53	-	-	-	C	153604391	A	C	153604391	1	2	232	0	1	0	0	0	0	0	0	0	13857	174	6	5		5	S100A1	1	153604391	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	426985	153604391	95646230	181	15707										
INTS3	0	genome.wustl.edu	37	chr1	153737515	153737515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcccaagattggctaccAcctgctctactacctgaggg	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	153737515	153737515	A	C	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	missense	c.2066	p.H689P	1.000	NULL	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	277	0	0	390	65	14.22	-	-	-	C	153737515	A	C	153737515	3	2	232	1	0	0	0	0	1	0	0	0	7833	159	6	5	2144	5	INTS3	1	153737515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	133124	153737515	95513106	182	15708										
SLC27A3	0	genome.wustl.edu	37	chr1	153751181	153751181	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtgagccagggctgctggTggccccggtaagccagcagt	17	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	153751181	153751181	T	G	SNP	SLC27A3	ENST00000368661	human	ensembl	69_37n	1	known	missense	c.1607	p.V536G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554	40	0	0	58	10	14.71	-	-	-	G	153751181	T	G	153751181	3	3	232	1	0	0	0	0	1	0	0	0	14616	1696	59	5	1633	5	SLC27A3	1	153751181	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13666	153751181	95499440	183	15709										
SLC27A3	0	genome.wustl.edu	37	chr1	153751591	153751591	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatctctgctctctgacaggTggaagggggagaatgtggcc	16	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	153751591	153751591	T	G	SNP	SLC27A3	ENST00000368661	human	ensembl	69_37n	1	known	missense	c.1789	p.W597G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554	148	0	0	226	40	14.98	-	-	-	G	153751591	T	G	153751591	3	3	232	1	0	0	0	0	1	0	0	0	14616	1710	59	5	1819	5	SLC27A3	1	153751591	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	410	153751591	95499030	184	15710										
TPM3	0	genome.wustl.edu	37	chr1	154144709	154144709	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaatgggaagagaacaccAccatggtcatgatatgttat	9	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154144709	154144709	A	C	SNP	TPM3	ENST00000469717	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	TPM3	HGNC	ENSG00000143549	174	1	0.57	309	35	10.06	-	-	-	C	154144709	A	C	154144709	1	2	232	0	1	0	0	0	0	0	0	0	16503	174	6	5		5	TPM3	1	154144709	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	393118	154144709	95105912	185	15711										
UBAP2L	0	genome.wustl.edu	37	chr1	154227786	154227786	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggagattccaaatactaccAccacacaacacagcaggtga	7	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154227786	154227786	A	C	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	missense	c.2068	p.T690P	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	161	1	0.62	196	30	13.27	-	-	-	C	154227786	A	C	154227786	3	2	232	1	0	0	0	0	1	0	0	0	16935	159	6	5	2130	5	UBAP2L	1	154227786	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83077	154227786	95022835	186	15712										
ATP8B2	0	genome.wustl.edu	37	chr1	154309891	154309891	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccatctgggagcacgaggTggggatgcgtttccaggtct	16	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154309891	154309891	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.1004	p.V335G	0.986	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	100	0	0	142	37	20.56	-	-	-	G	154309891	T	G	154309891	3	3	232	1	0	0	0	0	1	0	0	0	1199	1696	59	5	1050	5	ATP8B2	1	154309891	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	82105	154309891	94940730	187	15713										
ATP8B2	0	genome.wustl.edu	37	chr1	154317974	154317974	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctacaaaaactttgctttcAccatggtccacttctggttt	5	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154317974	154317974	A	C	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.2746	p.T916P	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	257	0	0	240	31	11.44	-	-	-	C	154317974	A	C	154317974	3	2	232	1	0	0	0	0	1	0	0	0	1199	159	6	5	2966	5	ATP8B2	1	154317974	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8083	154317974	94932647	188	15714										
IL6R	0	genome.wustl.edu	37	chr1	154401795	154401795	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagccggctgcaggctcccAccccagcagatgggctggca	14	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154401795	154401795	A	C	SNP	IL6R	ENST00000368485	human	ensembl	69_37n	1	known	missense	c.209	p.H70P	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL6R	HGNC	ENSG00000160712	52	0	0	52	22	29.33	-	-	-	C	154401795	A	C	154401795	3	2	232	1	0	0	0	0	1	0	0	0	7756	159	6	5	215	5	IL6R	1	154401795	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83821	154401795	94848826	189	15715										
UBE2Q1	0	genome.wustl.edu	37	chr1	154524698	154524698	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggctcagatgcctggttccAcctcaggagcttcataaggg	13	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154524698	154524698	A	C	SNP	UBE2Q1	ENST00000474181	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	117	0	0	143	24	14.37	-	-	-	C	154524698	A	C	154524698	1	2	232	0	1	0	0	0	0	0	0	0	16966	174	6	5		5	UBE2Q1	1	154524698	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	122903	154524698	94725923	190	15716										
PMVK	0	genome.wustl.edu	37	chr1	154897738	154897738	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attctgactcagcatcgtccAcccctatgaaggaagcatgg	9	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154897738	154897738	A	C	SNP	PMVK	ENST00000368467	human	ensembl	69_37n	-1	known	missense	c.446	p.V149G	1.000	pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344	428	2	0.46	545	65	10.6	-	-	-	C	154897738	A	C	154897738	3	2	232	1	0	0	0	0	1	0	0	0	12218	159	6	5	136	5	PMVK	1	154897738	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	373040	154897738	94352883	191	15717										
PBXIP1	0	genome.wustl.edu	37	chr1	154918515	154918515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagaggagtggaagctaccActtttccttgggggttcctt	12	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154918515	154918515	A	C	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	missense	c.1635	p.S545R	0.844	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	221	1	0.45	399	54	11.87	-	-	-	C	154918515	A	C	154918515	3	2	232	1	0	0	0	0	1	0	0	0	11569	156	6	5	568	5	PBXIP1	1	154918515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20777	154918515	94332106	192	15718										
FLAD1	0	genome.wustl.edu	37	chr1	154955875	154955875	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggggcagaacaggcaggTgagagtctaagagggctcag	18	6	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	154955875	154955875	T	G	SNP	FLAD1	ENST00000315144	human	ensembl	69_37n	1	known	splice_site	c.1+2	e0+2	1.000	-	-	-	no_errors	FLAD1	HGNC	ENSG00000160688	16	0	0	8	9	50	-	-	-	G	154955875	T	G	154955875	5	3	232	1	0	0	0	0	0	0	1	0	5966	1710	59	5		5	FLAD1	1	154955875	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	37360	154955875	94294746	193	15719										
TRIM46	0	genome.wustl.edu	37	chr1	155152140	155152140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgtcattgacacccagcgcAcctttgcctatgatcagatc	7	15	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155152140	155152140	A	C	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1318	p.T440P	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	26	0	0	42	15	26.32	-	-	-	C	155152140	A	C	155152140	3	2	232	1	0	0	0	0	1	0	0	0	16617	159	6	5	1348	5	TRIM46	1	155152140	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	196265	155152140	94098481	194	15720										
GBA	0	genome.wustl.edu	37	chr1	155209826	155209826	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcattgcagacacacaccAccgagctgtagccgaagctt	10	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155209826	155209826	A	C	SNP	GBA	ENST00000327247	human	ensembl	69_37n	-1	known	missense	c.158	p.V53G	1.000	pfam_Glyco_hydro_30,prints_Glyco_hydro_30	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628	46	0	0	60	15	19.74	-	-	-	C	155209826	A	C	155209826	3	2	232	1	0	0	0	0	1	0	0	0	6316	159	6	5	1488	5	GBA	1	155209826	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	57686	155209826	94040795	195	15721										
FAM189B	0	genome.wustl.edu	37	chr1	155223496	155223496	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gattatagcggcacaaatggTgagcccacagacgctgaaga	12	9	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155223496	155223496	T	G	SNP	FAM189B	ENST00000361361	human	ensembl	69_37n	-1	known	missense	c.541	p.T181P	1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767	87	0	0	43	12	21.82	-	-	-	G	155223496	T	G	155223496	3	3	232	1	0	0	0	0	1	0	0	0	5559	1696	59	5	1497	5	FAM189B	1	155223496	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13670	155223496	94027125	196	15722										
CLK2	0	genome.wustl.edu	37	chr1	155237914	155237914	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagggcaactcgagccccAcccctgtaagttggcaggag	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155237914	155237914	A	C	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	silent	c.558	p.G186	0.849	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	130	0	0	200	25	11.06	-	-	-	C	155237914	A	C	155237914	2	2	232	1	0	0	0	0	0	0	0	1	3567	146	6	5		5	CLK2	1	155237914	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14418	155237914	94012707	197	15723										
MSTO1	0	genome.wustl.edu	37	chr1	155580926	155580926	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactgatgtatggataagggTggggatcgtgtatgtacgca	15	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155580926	155580926	T	G	SNP	MSTO1	ENST00000482284	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MSTO1	HGNC	ENSG00000125459	47	0	0	38	17	29.31	-	-	-	G	155580926	T	G	155580926	1	3	232	0	1	0	0	0	0	0	0	0	9966	1711	59	5		5	MSTO1	1	155580926	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	343012	155580926	93669695	198	15724										
SYT11	0	genome.wustl.edu	37	chr1	155838008	155838008	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggacgtaggaacctgttggTggacgcagcagaggctggcc	17	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	155838008	155838008	T	G	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.287	p.V96G	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	156	0	0	282	45	13.55	-	-	-	G	155838008	T	G	155838008	3	3	232	1	0	0	0	0	1	0	0	0	15559	1696	59	5	293	5	SYT11	1	155838008	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	257082	155838008	93412613	199	15725										
TMEM79	0	genome.wustl.edu	37	chr1	156255128	156255128	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggcagccagaaggggaaggTggggccgaatccccgggagc	19	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	156255128	156255128	T	G	SNP	TMEM79	ENST00000295694	human	ensembl	69_37n	1	known	silent	c.111	p.G37	0.001	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472	29	0	0	42	9	17.65	-	-	-	G	156255128	T	G	156255128	2	3	232	1	0	0	0	0	0	0	0	1	16298	1683	59	5		5	TMEM79	1	156255128	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	417120	156255128	92995493	200	15726										
BCAN	0	genome.wustl.edu	37	chr1	156626134	156626134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttggaggaggaggaaggggTccgctgcctatgtctgcctg	17	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	156626134	156626134	T	G	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.2003	p.V668G	0.908	pfam_EGF-like_dom,smart_EGF-like,pfscan_EG-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	90	0	0	137	27	16.27	-	-	-	G	156626134	T	G	156626134	3	3	232	1	0	0	0	0	1	0	0	0	1349	1667	58	5	2107	5	BCAN	1	156626134	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	371006	156626134	92624487	201	15727										
NES	0	genome.wustl.edu	37	chr1	156639352	156639352	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacatgctgtgacttccccTccaagttgggaccctggcca	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	156639352	156639352	T	C	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.4628	p.E1543G	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	136	1	0.72	201	32	13.73	-	-	-	C	156639352	T	C	156639352	3	2	232	1	0	0	0	0	1	0	0	0	10409	1551	54	5	241	5	NES	1	156639352	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13218	156639352	92611269	202	15728										
MRPL24	0	genome.wustl.edu	37	chr1	156708187	156708187	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgccggataacttgaaccActttgccctgcttcccggca	9	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	156708187	156708187	A	C	SNP	MRPL24	ENST00000361531	human	ensembl	69_37n	-1	known	missense	c.227	p.V76G	1.000	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314	276	1	0.36	416	65	13.46	-	-	-	C	156708187	A	C	156708187	3	2	232	1	0	0	0	0	1	0	0	0	9862	159	6	5	439	5	MRPL24	1	156708187	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	68835	156708187	92542434	203	15729										
ETV3L	0	genome.wustl.edu	37	chr1	157068562	157068562	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggggcccccagcagcaagTggggggatggcggcgcccgc	19	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	157068562	157068562	T	G	SNP	ETV3L	ENST00000454449	human	ensembl	69_37n	-1	known	missense	c.422	p.H141P	0.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ETV3L	HGNC	ENSG00000253831	58	0	0	48	13	21.31	-	-	-	G	157068562	T	G	157068562	3	3	232	1	0	0	0	0	1	0	0	0	5317	1696	59	5	675	5	ETV3L	1	157068562	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	360375	157068562	92182059	204	15730										
FCRL4	0	genome.wustl.edu	37	chr1	157548586	157548586	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catacaacgactgaagctccAcctgggcagggcagatggaa	12	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	157548586	157548586	A	C	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	missense	c.1334	p.V445G	0.067	NULL	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	39	0	0	31	11	26.19	-	-	-	C	157548586	A	C	157548586	3	2	232	1	0	0	0	0	1	0	0	0	5843	159	6	5	229	5	FCRL4	1	157548586	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	480024	157548586	91702035	205	15731										
OR10T2	0	genome.wustl.edu	37	chr1	158368584	158368584	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaggggatcttcaggatggTgttaactatgaagccatagg	14	5	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	158368584	158368584	T	G	SNP	OR10T2	ENST00000334438	human	ensembl	69_37n	-1	known	missense	c.673	p.T225P	0.942	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306	103	0	0	125	16	11.35	-	-	-	G	158368584	T	G	158368584	3	3	232	1	0	0	0	0	1	0	0	0	10992	1696	59	5	273	5	OR10T2	1	158368584	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	819998	158368584	90882037	206	15732										
SPTA1	0	genome.wustl.edu	37	chr1	158615142	158615142	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcctctaaggcctggaaggTgggagcctctgcctccatgt	13	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	158615142	158615142	T	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.4030	p.T1344P	0.860	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	132	1	0.75	259	42	13.91	-	-	-	G	158615142	T	G	158615142	3	3	232	1	0	0	0	0	1	0	0	0	15207	1696	59	5	3325	5	SPTA1	1	158615142	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	246558	158615142	90635479	207	15733										
SPTA1	0	genome.wustl.edu	37	chr1	158653164	158653164	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggcccatacatataccttCgtttcttcgtgggcagaatg	10	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	158653164	158653164	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.387	p.T129	0.728	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	152	0	0	267	40	13.03	-	-	-	T	158653164	C	T	158653164	2	4	232	1	0	0	0	0	0	0	0	1	15207	871	31	1		1	SPTA1	1	158653164	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	38022	158653164	90597457	208	15734										
OR6K6	0	genome.wustl.edu	37	chr1	158725182	158725182	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgagattgcatggatttccAccttgcctttctgtggctcc	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	158725182	158725182	A	C	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	missense	c.577	p.T193P	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	120	0	0	187	42	18.26	-	-	-	C	158725182	A	C	158725182	3	2	232	1	0	0	0	0	1	0	0	0	11277	159	6	5	579	5	OR6K6	1	158725182	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	72018	158725182	90525439	209	15735										
IFI16	0	genome.wustl.edu	37	chr1	158986469	158986469	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagacctcattgtcagctccAcccaacagttcttcaactga	5	14	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	158986469	158986469	A	C	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	silent	c.528	p.P176	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	163	0	0	285	39	11.96	-	-	-	C	158986469	A	C	158986469	2	2	232	1	0	0	0	0	0	0	0	1	7565	146	6	5		5	IFI16	1	158986469	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	261287	158986469	90264152	210	15736										
KCNJ10	0	genome.wustl.edu	37	chr1	160011387	160011387	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgacagtgagatggcaggTgtgaactcgtagccccaaag	14	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160011387	160011387	T	G	SNP	KCNJ10	ENST00000368089	human	ensembl	69_37n	-1	known	silent	c.936	p.T312	0.904	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807	172	1	0.58	189	52	21.49	-	-	-	G	160011387	T	G	160011387	2	3	232	1	0	0	0	0	0	0	0	1	8098	1683	59	5		5	KCNJ10	1	160011387	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1024918	160011387	89239234	211	15737										
KCNJ10	0	genome.wustl.edu	37	chr1	160012303	160012303	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtggtctgactgtaatacAccttggcaactgacgtcatc	10	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160012303	160012303	A	C	SNP	KCNJ10	ENST00000368089	human	ensembl	69_37n	-1	known	missense	c.20	p.V7G	1.000	prints_K_chnl_inward-rec_Kir1.2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807	214	0	0	295	43	12.68	-	-	-	C	160012303	A	C	160012303	3	2	232	1	0	0	0	0	1	0	0	0	8098	159	6	5	1123	5	KCNJ10	1	160012303	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	916	160012303	89238318	212	15738										
IGSF8	0	genome.wustl.edu	37	chr1	160064670	160064670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccagtacctctcagctccAccttgccgctgtagctgccc	8	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160064670	160064670	A	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	missense	c.431	p.V144G	1.000	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	82	0	0	59	13	18.06	-	-	-	C	160064670	A	C	160064670	3	2	232	1	0	0	0	0	1	0	0	0	7658	159	6	5	1430	5	IGSF8	1	160064670	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	52367	160064670	89185951	213	15739										
ATP1A2	0	genome.wustl.edu	37	chr1	160097384	160097384	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccacaggagaccggacggTgatgggccgcatagctactc	14	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160097384	160097384	T	G	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.791	p.V264G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	93	0	0	165	36	17.82	-	-	-	G	160097384	T	G	160097384	3	3	232	1	0	0	0	0	1	0	0	0	1133	1696	59	5	821	5	ATP1A2	1	160097384	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	32714	160097384	89153237	214	15740										
NCSTN	0	genome.wustl.edu	37	chr1	160323997	160323997	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcagtcccagcctctcccAccatcttccctgcagcgatt	5	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160323997	160323997	A	C	SNP	NCSTN	ENST00000424645	human	ensembl	69_37n	1	known	missense	c.776	p.H259P	0.930	pfam_Nicastrin,pfam_Peptidase_M28	pfam_Nicastrin,pfam_Peptidase_M28	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCSTN	HGNC	ENSG00000162736	118	0	0	192	27	12.27	-	-	-	C	160323997	A	C	160323997	3	2	232	1	0	0	0	0	1	0	0	0	10313	146	6	5	1311	5	NCSTN	1	160323997	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	226613	160323997	88926624	215	15741										
ITLN2	0	genome.wustl.edu	37	chr1	160921010	160921010	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaccagggtccagccgccAcccccagaagtcatgtcaca	9	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	160921010	160921010	A	C	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	silent	c.264	p.G88	0.993	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	69	0	0	122	29	19.21	-	-	-	C	160921010	A	C	160921010	2	2	232	1	0	0	0	0	0	0	0	1	7965	146	6	5		5	ITLN2	1	160921010	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	597013	160921010	88329611	216	15742										
ADAMTS4	0	genome.wustl.edu	37	chr1	161168058	161168058	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggtgccaggctctgctccAcccagcagctcaggcgcctg	12	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	161168058	161168058	A	C	SNP	ADAMTS4	ENST00000367996	human	ensembl	69_37n	-1	known	silent	c.360	p.G120	0.134	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859	64	0	0	95	21	17.8	-	-	-	C	161168058	A	C	161168058	2	2	232	1	0	0	0	0	0	0	0	1	268	146	6	5		5	ADAMTS4	1	161168058	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	247048	161168058	88082563	217	15743										
APOA2	0	genome.wustl.edu	37	chr1	161192946	161192946	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatacctctgccagtacccAccccagctctctgccccctc	4	23	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	161192946	161192946	A	C	SNP	APOA2	ENST00000481413	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.113	-	-	-	no_errors	APOA2	HGNC	ENSG00000158874	40	0	0	92	28	22.76	-	-	-	C	161192946	A	C	161192946	1	2	232	0	1	0	0	0	0	0	0	0	784	174	6	5		5	APOA2	1	161192946	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24888	161192946	88057675	218	15744										
MPZ	0	genome.wustl.edu	37	chr1	161276671	161276671	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcgctctttgaaggtccccAcctcgtcaatgtagggttgt	11	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	161276671	161276671	A	C	SNP	MPZ	ENST00000360451	human	ensembl	69_37n	-1	known	missense	c.305	p.V102G	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	pfam_Myelin-PO_C,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZ	HGNC	ENSG00000158887	134	0	0	202	28	12.07	-	-	-	C	161276671	A	C	161276671	3	2	232	1	0	0	0	0	1	0	0	0	9820	159	6	5	487	5	MPZ	1	161276671	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83725	161276671	87973950	219	15745										
FCGR3A	0	genome.wustl.edu	37	chr1	161514722	161514722	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcttcctccttgaacacccAccgaggggcctggagcaaca	10	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	161514722	161514722	A	C	SNP	FCGR3A	ENST00000367969	human	ensembl	69_37n	-1	known	missense	c.454	p.W152G	0.000	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCGR3A	HGNC	ENSG00000203747	33	0	0	68	25	26.6	-	-	-	C	161514722	A	C	161514722	3	2	232	1	0	0	0	0	1	0	0	0	5830	159	6	5	426	5	FCGR3A	1	161514722	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	238051	161514722	87735899	220	15746										
DDR2	0	genome.wustl.edu	37	chr1	162735826	162735826	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaactctgaagccctgcccAcctctcctatggcacccaca	5	19	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	162735826	162735826	A	C	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.1135	p.T379P	0.466	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	121	0	0	155	32	17.02	-	-	-	C	162735826	A	C	162735826	3	2	232	1	0	0	0	0	1	0	0	0	4368	159	6	5	1165	5	DDR2	1	162735826	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1221104	162735826	86514795	221	15747										
GPA33	0	genome.wustl.edu	37	chr1	167059520	167059520	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acacaggccacatcttccccAccatggtcttgcttcttctc	5	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	167059520	167059520	A	C	SNP	GPA33	ENST00000367868	human	ensembl	69_37n	-1	known	missense	c.5	p.V2G	0.035	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	GPA33	HGNC	ENSG00000143167	97	0	0	126	25	16.34	-	-	-	C	167059520	A	C	167059520	3	2	232	1	0	0	0	0	1	0	0	0	6636	159	6	5	982	5	GPA33	1	167059520	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4323694	167059520	82191101	222	15748										
POU2F1	0	genome.wustl.edu	37	chr1	167381312	167381312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctgcctcagcctccaccTccgaggcatccagtgccagt	8	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	167381312	167381312	T	C	SNP	POU2F1	ENST00000367866	human	ensembl	69_37n	1	known	missense	c.1672	p.S558P	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	99	0	0	145	39	21.08	-	-	-	C	167381312	T	C	167381312	3	2	232	1	0	0	0	0	1	0	0	0	12344	1551	54	5	1653	5	POU2F1	1	167381312	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	321792	167381312	81869309	223	15749										
GORAB	0	genome.wustl.edu	37	chr1	170521353	170521353	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagactttggagcttgaggTggaggtcgagagattgctac	16	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	170521353	170521353	T	G	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.935	p.V312G	0.945	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	161	0	0	207	29	12.18	-	-	-	G	170521353	T	G	170521353	3	3	232	1	0	0	0	0	1	0	0	0	6623	1696	59	5	957	5	GORAB	1	170521353	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3140041	170521353	78729268	224	15750										
TNFSF4	0	genome.wustl.edu	37	chr1	173174624	173174624	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctgtacaactgtggttcAccttttgctctctcctgctc	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	173174624	173174624	A	C	SNP	TNFSF4	ENST00000488053	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	TNFSF4	HGNC	ENSG00000117586	69	0	0	85	28	24.56	-	-	-	C	173174624	A	C	173174624	1	2	232	0	1	0	0	0	0	0	0	0	16405	174	6	5		5	TNFSF4	1	173174624	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2653271	173174624	76075997	225	15751										
ASTN1	0	genome.wustl.edu	37	chr1	176845720	176845720	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcatggggtcttcacgatcAcgtcgcttggcctggagcgc	15	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	176845720	176845720	A	C	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.3440	p.V1147G	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	95	0	0	107	18	14.29	-	-	-	C	176845720	A	C	176845720	3	2	232	1	0	0	0	0	1	0	0	0	1068	159	6	5	484	5	ASTN1	1	176845720	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3671096	176845720	72404901	226	15752										
RASAL2	0	genome.wustl.edu	37	chr1	178421769	178421769	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattgccaaggtcattcagaAcctggccaactttgccaagt	8	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	178421769	178421769	A	C	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.1991	p.N664T	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	196	1	0.51	249	30	10.75	-	-	-	C	178421769	A	C	178421769	3	2	232	1	0	0	0	0	1	0	0	0	13147	43	2	5	2050	5	RASAL2	1	178421769	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1576049	178421769	70828852	227	15753										
RASAL2	0	genome.wustl.edu	37	chr1	178427487	178427487	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggaccagggtgggttaggTgcccgagccaaagccccacc	15	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	178427487	178427487	T	G	SNP	RASAL2	ENST00000433130	human	ensembl	69_37n	1	putative	missense	c.1288	p.C430G	0.984	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_PP1_inhibitor,smart_RasGAP,pfscan_RasGAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RASAL2	HGNC	ENSG00000075391	122	0	0	137	20	12.74	-	-	-	G	178427487	T	G	178427487	3	3	232	1	0	0	0	0	1	0	0	0	13147	1683	59	5	3152	5	RASAL2	1	178427487	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5718	178427487	70823134	228	15754										
ABL2	0	genome.wustl.edu	37	chr1	179081525	179081525	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcctatcggcagggctccActtccagcctatgtaacaga	11	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	179081525	179081525	A	C	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.1570	p.W524G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	61	0	0	109	22	16.79	-	-	-	C	179081525	A	C	179081525	3	2	232	1	0	0	0	0	1	0	0	0	93	159	6	5	2035	5	ABL2	1	179081525	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	654038	179081525	70169096	229	15755										
QSOX1	0	genome.wustl.edu	37	chr1	180153135	180153135	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgcccagaccacagttgcAccaaccactgctaacaagat	7	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	180153135	180153135	A	C	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	silent	c.837	p.A279	0.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	220	0	0	226	41	15.19	-	-	-	C	180153135	A	C	180153135	2	2	232	1	0	0	0	0	0	0	0	1	12966	146	6	5		5	QSOX1	1	180153135	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1071610	180153135	69097486	230	15756										
CACNA1E	0	genome.wustl.edu	37	chr1	181690905	181690905	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttttgtagatcctgacgggTgaggactggaatgaggtgat	15	4	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	181690905	181690905	T	G	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	silent	c.1968	p.G656	0.498	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	58	0	0	103	16	13.45	-	-	-	G	181690905	T	G	181690905	2	3	232	1	0	0	0	0	0	0	0	1	2567	1683	59	5		5	CACNA1E	1	181690905	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1537770	181690905	67559716	231	15757										
ZNF648	0	genome.wustl.edu	37	chr1	182027118	182027118	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaggagacgcctctccccAcctgtcctgggagtccactt	11	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	182027118	182027118	A	C	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.28	p.W10G	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	79	0	0	65	20	23.26	-	-	-	C	182027118	A	C	182027118	3	2	232	1	0	0	0	0	1	0	0	0	18159	159	6	5	1682	5	ZNF648	1	182027118	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	336213	182027118	67223503	232	15758										
LAMC1	0	genome.wustl.edu	37	chr1	183079679	183079679	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacgaatttgataagctggTgtgtaattgcaaacataaca	9	5	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	183079679	183079679	T	G	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.911	p.V304G	0.998	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	149	0	0	265	38	12.5	-	-	-	G	183079679	T	G	183079679	3	3	232	1	0	0	0	0	1	0	0	0	8668	1696	59	5	925	5	LAMC1	1	183079679	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1052561	183079679	66170942	233	15759										
LAMC2	0	genome.wustl.edu	37	chr1	183208514	183208514	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagagtttgacctgcaggTggacaacagaaaagcagaag	12	7	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	183208514	183208514	T	G	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.2885	p.V962G	0.971	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	203	0	0	233	51	17.89	-	-	-	G	183208514	T	G	183208514	3	3	232	1	0	0	0	0	1	0	0	0	8669	1696	59	5	2963	5	LAMC2	1	183208514	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	128835	183208514	66042107	234	15760										
HMCN1	0	genome.wustl.edu	37	chr1	186014911	186014911	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaagtgatgctattcccccAcctactcttacttggttaaa	5	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	186014911	186014911	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.6396	p.P2132	0.562	pfam_Ig_I-set,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	92	0	0	121	14	10.37	-	-	-	C	186014911	A	C	186014911	2	2	232	1	0	0	0	0	0	0	0	1	7271	146	6	5		5	HMCN1	1	186014911	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2806397	186014911	63235710	235	15761										
PLA2G4A	0	genome.wustl.edu	37	chr1	186901924	186901924	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagccatattgggttcaggTgggggtttccgagccatggt	16	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	186901924	186901924	T	G	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	silent	c.588	p.G196	0.957	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	108	0	0	237	53	18.28	-	-	-	G	186901924	T	G	186901924	2	3	232	1	0	0	0	0	0	0	0	1	12075	1683	59	5		5	PLA2G4A	1	186901924	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	887013	186901924	62348697	236	15762										
ZBTB41	0	genome.wustl.edu	37	chr1	197169225	197169225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtgttacgtgatccagggTgacaacatcagtgcttggat	12	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	197169225	197169225	T	G	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	missense	c.379	p.T127P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	141	0	0	210	25	10.55	-	-	-	G	197169225	T	G	197169225	3	3	232	1	0	0	0	0	1	0	0	0	17639	1696	59	5	2390	5	ZBTB41	1	197169225	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10267301	197169225	52081396	237	15763										
KIF14	0	genome.wustl.edu	37	chr1	200571175	200571175	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgcagtttttgaatttccAcccagactttcttttaacag	5	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	200571175	200571175	A	C	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	silent	c.2001	p.G667	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	71	0	0	78	17	17.71	-	-	-	C	200571175	A	C	200571175	2	2	232	1	0	0	0	0	0	0	0	1	8328	146	6	5		5	KIF14	1	200571175	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3401950	200571175	48679446	238	15764										
KIF21B	0	genome.wustl.edu	37	chr1	200972805	200972805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttgtcctggttcactaccAccttgttcttgatgttgcgg	9	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	200972805	200972805	A	C	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.1121	p.V374G	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	48	0	0	59	13	17.81	-	-	-	C	200972805	A	C	200972805	3	2	232	1	0	0	0	0	1	0	0	0	8341	159	6	5	3861	5	KIF21B	1	200972805	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	401630	200972805	48277816	239	15765										
NAV1	0	genome.wustl.edu	37	chr1	201789054	201789054	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccccaaccttcaggcaacActttaagggttcggcaatca	8	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	201789054	201789054	A	C	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	silent	c.5628	p.T1876	0.154	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	141	0	0	197	22	10.05	-	-	-	C	201789054	A	C	201789054	2	2	232	1	0	0	0	0	0	0	0	1	10255	146	6	5		5	NAV1	1	201789054	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	816249	201789054	47461567	240	15766										
SHISA4	0	genome.wustl.edu	37	chr1	201860688	201860688	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgggcccccagtctacaAccctgcaggtaagtaagcaa	10	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	201860688	201860688	A	C	SNP	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	missense	c.539	p.N180T	1.000	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	141	1	0.69	177	31	14.83	-	-	-	C	201860688	A	C	201860688	3	2	232	1	0	0	0	0	1	0	0	0	14371	43	2	5	553	5	SHISA4	1	201860688	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	71634	201860688	47389933	241	15767										
LMOD1	0	genome.wustl.edu	37	chr1	201915329	201915329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtttctctgccgcagccccAcgggaacactcccgtctggg	12	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	201915329	201915329	A	C	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	missense	c.140	p.V47G	0.997	pfam_Tropomodulin	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	73	0	0	137	16	10.26	-	-	-	C	201915329	A	C	201915329	3	2	232	1	0	0	0	0	1	0	0	0	8912	159	6	5	1674	5	LMOD1	1	201915329	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	54641	201915329	47335292	242	15768										
ADIPOR1	0	genome.wustl.edu	37	chr1	202920125	202920125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcccagttcagccagttccAccgtgtcagcttccctgtta	8	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	202920125	202920125	A	C	SNP	ADIPOR1	ENST00000340990	human	ensembl	69_37n	-1	known	missense	c.74	p.V25G	1.000	NULL	pfam_HlyIII-related	-	no_errors	ADIPOR1	HGNC	ENSG00000159346	155	0	0	230	42	15.38	-	-	-	C	202920125	A	C	202920125	3	2	232	1	0	0	0	0	1	0	0	0	318	159	6	5	1081	5	ADIPOR1	1	202920125	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1004796	202920125	46330496	243	15769										
ETNK2	0	genome.wustl.edu	37	chr1	204106365	204106365	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgggtacaggcagtaatccAcctcattcacgcctgagggg	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	204106365	204106365	A	C	SNP	ETNK2	ENST00000367201	human	ensembl	69_37n	-1	known	missense	c.881	p.V294G	0.988	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	ETNK2	HGNC	ENSG00000143845	73	0	0	120	29	19.46	-	-	-	C	204106365	A	C	204106365	3	2	232	1	0	0	0	0	1	0	0	0	5311	159	6	5	291	5	ETNK2	1	204106365	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1186240	204106365	45144256	244	15770										
PIK3C2B	0	genome.wustl.edu	37	chr1	204438609	204438609	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaggctgtggcccttgggAggtagagtggttgggcggcc	20	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	204438609	204438609	A	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.322	p.S108P	0.970	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	164	0	0	182	23	11.11	-	-	-	G	204438609	A	G	204438609	3	3	232	1	0	0	0	0	1	0	0	0	11984	304	11	5	4710	5	PIK3C2B	1	204438609	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	332244	204438609	44812012	245	15771										
NFASC	0	genome.wustl.edu	37	chr1	204978714	204978714	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaaccaagcggacatcgccAcccagggctggttcattggg	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	204978714	204978714	A	C	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.3640	p.T1214P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	150	1	0.65	212	32	12.85	-	-	-	C	204978714	A	C	204978714	3	2	232	1	0	0	0	0	1	0	0	0	10431	159	6	5	3834	5	NFASC	1	204978714	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	540105	204978714	44271907	246	15772										
TMEM81	0	genome.wustl.edu	37	chr1	205052791	205052791	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgacgccaccttctttttccActttgggtggtgaggcttgg	12	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	205052791	205052791	A	C	SNP	TMEM81	ENST00000367167	human	ensembl	69_37n	-1	known	missense	c.658	p.W220G	0.991	NULL	pfscan_Ig-like	-	no_errors	TMEM81	HGNC	ENSG00000174529	170	0	0	257	30	10.45	-	-	-	C	205052791	A	C	205052791	3	2	232	1	0	0	0	0	1	0	0	0	16300	159	6	5	113	5	TMEM81	1	205052791	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	74077	205052791	44197830	247	15773										
DSTYK	0	genome.wustl.edu	37	chr1	205156734	205156734	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgagtctgagtcccataggTgaagcggaggcgccgaagct	15	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	205156734	205156734	T	G	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	missense	c.466	p.T156P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	103	1	0.96	182	23	11.22	-	-	-	G	205156734	T	G	205156734	3	3	232	1	0	0	0	0	1	0	0	0	4820	1696	59	5	2371	5	DSTYK	1	205156734	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	103943	205156734	44093887	248	15774										
SLC41A1	0	genome.wustl.edu	37	chr1	205760583	205760583	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagaggtgggagtgtggggTggaggagggacaggggaaca	23	2	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	205760583	205760583	T	G	SNP	SLC41A1	ENST00000468057	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC41A1	HGNC	ENSG00000133065	31	0	0	33	24	42.11	-	-	-	G	205760583	T	G	205760583	1	3	232	0	1	0	0	0	0	0	0	0	14718	1711	59	5		5	SLC41A1	1	205760583	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	603849	205760583	43490038	249	15775										
SRGAP2	0	genome.wustl.edu	37	chr1	206628329	206628329	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgggggccagctgtcccagTgggggtcatgtagccgatat	17	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	206628329	206628329	T	G	SNP	SRGAP2	ENST00000419187	human	ensembl	69_37n	1	known	missense	c.381	p.S127R	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_stop_codon	SRGAP2	HGNC	ENSG00000163486	95	0	0	177	23	11.44	-	-	-	G	206628329	T	G	206628329	3	3	232	1	0	0	0	0	1	0	0	0	15237	1693	59	5	2276	5	SRGAP2	1	206628329	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	867746	206628329	42622292	250	15776										
CAMK1G	0	genome.wustl.edu	37	chr1	209785219	209785219	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgggcgtccgcccagaggTggagaacaggccgcctgaaa	15	14	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	209785219	209785219	T	G	SNP	CAMK1G	ENST00000009105	human	ensembl	69_37n	1	known	missense	c.998	p.V333G	0.009	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	165	1	0.6	214	30	12.1	-	-	-	G	209785219	T	G	209785219	3	3	232	1	0	0	0	0	1	0	0	0	2623	1696	59	5	1036	5	CAMK1G	1	209785219	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3156890	209785219	39465402	251	15777										
LAMB3	0	genome.wustl.edu	37	chr1	209796405	209796405	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgccatcaagaaggccccAccggccctgggaaggacacc	11	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	209796405	209796405	A	C	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	silent	c.2478	p.G826	0.014	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	63	0	0	105	25	18.94	-	-	-	C	209796405	A	C	209796405	2	2	232	1	0	0	0	0	0	0	0	1	8666	146	6	5		5	LAMB3	1	209796405	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11186	209796405	39454216	252	15778										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209954588	209954588	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggaagggaagatggtggTaaaaattccaaatgagtgaa	14	3	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	209954588	209954588	T	G	SNP	TRAF3IP3	ENST00000467830	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	97	0	0	97	27	21.6	-	-	-	G	209954588	T	G	209954588	1	3	232	0	1	0	0	0	0	0	0	0	16538	1653	57	5		5	TRAF3IP3	1	209954588	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	158183	209954588	39296033	253	15779										
FAM71A	0	genome.wustl.edu	37	chr1	212798747	212798747	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaatttacctcttgcggccAcccatggagagtaacagcag	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	212798747	212798747	A	C	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	silent	c.528	p.P176	0.050	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	193	0	0	265	34	11.37	-	-	-	C	212798747	A	C	212798747	2	2	232	1	0	0	0	0	0	0	0	1	5652	146	6	5		5	FAM71A	1	212798747	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2844159	212798747	36451874	254	15780										
SMYD2	0	genome.wustl.edu	37	chr1	214507378	214507378	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgcaatgattcggcagggTggcagcatccacgctctcca	11	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	214507378	214507378	T	G	SNP	SMYD2	ENST00000491455	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMYD2	HGNC	ENSG00000143499	36	0	0	41	21	33.87	-	-	-	G	214507378	T	G	214507378	1	3	232	0	1	0	0	0	0	0	0	0	14911	1711	59	5		5	SMYD2	1	214507378	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1708631	214507378	34743243	255	15781										
PTPN14	0	genome.wustl.edu	37	chr1	214557526	214557526	+	Frame_Shift_Del	DEL	T	T	-													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagagatagttcttaagcaTgtgggccgtgctgtagttat							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	214557526	214557526	T	-	DEL	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	frame_shift_del	c.1672	p.M558fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	80	0	0	94	31	24.41	-	-	-	-	214557526	T	-	214557526	7	5	232	1	0	1	0	1	0	0	0	0	12864	1464	51	0	1919	0	PTPN14	1	214557526	Frame_Shift_Del	DEL	T	TCGA-A8-A0A6-01A-12W-A071-09	50148	214557526	34693095	256	15782										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220325057	220325057	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcctttgccccgtgagcAccagcagctgagaggcaagg	13	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	220325057	220325057	A	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.3917	p.V1306G	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	182	0	0	225	29	11.33	-	-	-	C	220325057	A	C	220325057	3	2	232	1	0	0	0	0	1	0	0	0	13019	159	6	5	272	5	RAB3GAP2	1	220325057	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5767531	220325057	28925564	257	15783										
DUSP10	0	genome.wustl.edu	37	chr1	221912942	221912942	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccttgagggacacaacggTggtggcgatgacaggagggt	18	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	221912942	221912942	T	G	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.145	p.T49P	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	119	1	0.83	140	34	19.32	-	-	-	G	221912942	T	G	221912942	3	3	232	1	0	0	0	0	1	0	0	0	4845	1696	59	5	1315	5	DUSP10	1	221912942	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1587885	221912942	27337679	258	15784										
SUSD4	0	genome.wustl.edu	37	chr1	223402709	223402709	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacgaaatctccgtgactcAccattggaggtagtggacag	12	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	223402709	223402709	A	C	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.746	p.V249G	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	51	0	0	69	9	11.54	-	-	-	C	223402709	A	C	223402709	3	2	232	1	0	0	0	0	1	0	0	0	15501	159	6	5	742	5	SUSD4	1	223402709	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1489767	223402709	25847912	259	15785										
TMEM63A	0	genome.wustl.edu	37	chr1	226034979	226034979	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacactgcatccctccccTcctgcccttctcccaacagg	4	22	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	226034979	226034979	T	C	SNP	TMEM63A	ENST00000496025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM63A	HGNC	ENSG00000196187	26	0	0	19	7	25	-	-	-	C	226034979	T	C	226034979	1	2	232	0	1	0	0	0	0	0	0	0	16285	1566	54	5		5	TMEM63A	1	226034979	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2632270	226034979	23215642	260	15786										
TMEM63A	0	genome.wustl.edu	37	chr1	226047009	226047009	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgaagttgatgcccagccActgtagccaccagcggaggc	14	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	226047009	226047009	A	C	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1264	p.W422G	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	46	0	0	53	9	14.52	-	-	-	C	226047009	A	C	226047009	3	2	232	1	0	0	0	0	1	0	0	0	16285	159	6	5	1199	5	TMEM63A	1	226047009	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12030	226047009	23203612	261	15787										
TMEM63A	0	genome.wustl.edu	37	chr1	226048591	226048591	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagggtcagcagcaaaggTgactgtccacttggaggtat	13	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	226048591	226048591	T	G	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1192	p.T398P	0.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	135	1	0.72	174	28	13.66	-	-	-	G	226048591	T	G	226048591	3	3	232	1	0	0	0	0	1	0	0	0	16285	1696	59	5	1275	5	TMEM63A	1	226048591	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1582	226048591	23202030	262	15788										
PARP1	0	genome.wustl.edu	37	chr1	226549089	226549089	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcaacttagcggccaggTgagttggtgcagaagcgctt	14	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	226549089	226549089	T	G	SNP	PARP1	ENST00000463968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PARP1	HGNC	ENSG00000143799	22	0	0	27	16	36.36	-	-	-	G	226549089	T	G	226549089	1	3	232	0	1	0	0	0	0	0	0	0	11527	1711	59	5		5	PARP1	1	226549089	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	500498	226549089	22701532	263	15789										
OBSCN	0	genome.wustl.edu	37	chr1	228412169	228412169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccatccccagagcccaaggTggtgtttgctaaggagcagc	12	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	228412169	228412169	T	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.2663	p.V888G	0.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	72	0	0	68	30	30	-	-	-	G	228412169	T	G	228412169	3	3	232	1	0	0	0	0	1	0	0	0	10885	1696	59	5	2693	5	OBSCN	1	228412169	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1863080	228412169	20838452	264	15790										
OBSCN	0	genome.wustl.edu	37	chr1	228452078	228452078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatcagcggctgtccttccAcctgcacgtggcaggtcagt	13	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	228452078	228452078	A	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.4847	p.H1616P	0.007	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	24	0	0	29	13	29.55	-	-	-	C	228452078	A	C	228452078	3	2	232	1	0	0	0	0	1	0	0	0	10885	159	6	5	4905	5	OBSCN	1	228452078	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	39909	228452078	20798543	265	15791										
C1orf198	0	genome.wustl.edu	37	chr1	230979483	230979483	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcttcctcctccttcctggTggggcccagggcgtccaggc	13	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	230979483	230979483	T	G	SNP	C1orf198	ENST00000366663	human	ensembl	69_37n	-1	known	missense	c.544	p.T182P	0.000	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280	124	0	0	263	30	10.2	-	-	-	G	230979483	T	G	230979483	3	3	232	1	0	0	0	0	1	0	0	0	2045	1696	59	5	447	5	C1orf198	1	230979483	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2527405	230979483	18271138	266	15792										
C1orf198	0	genome.wustl.edu	37	chr1	230979525	230979525	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggacctgctgccttgggAggacttgagggcctgggagc	19	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	230979525	230979525	A	G	SNP	C1orf198	ENST00000366663	human	ensembl	69_37n	-1	known	missense	c.502	p.S168P	0.002	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280	120	1	0.83	216	41	15.95	-	-	-	G	230979525	A	G	230979525	3	3	232	1	0	0	0	0	1	0	0	0	2045	304	11	5	489	5	C1orf198	1	230979525	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42	230979525	18271096	267	15793										
PCNXL2	0	genome.wustl.edu	37	chr1	233394091	233394091	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtctggccttccttccccAccttagactcggagcctgta	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	233394091	233394091	A	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.1517	p.V506G	0.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	71	0	0	100	31	23.31	-	-	-	C	233394091	A	C	233394091	3	2	232	1	0	0	0	0	1	0	0	0	11665	159	6	5	5016	5	PCNXL2	1	233394091	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2414566	233394091	15856530	268	15794										
SLC35F3	0	genome.wustl.edu	37	chr1	234454587	234454587	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtttaacatcctcttcatcAcctgcattcctattatcctc	2	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	234454587	234454587	A	C	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	missense	c.1045	p.T349P	1.000	pfam_DUF914_euk	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	175	0	0	345	42	10.8	-	-	-	C	234454587	A	C	234454587	3	2	232	1	0	0	0	0	1	0	0	0	14679	159	6	5	1067	5	SLC35F3	1	234454587	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1060496	234454587	14796034	269	15795										
RYR2	0	genome.wustl.edu	37	chr1	237617789	237617789	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatctcattggctacttccAccccccagatgagcatttag	8	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	237617789	237617789	A	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1385	p.H462P	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	122	1	0.81	170	26	13.27	-	-	-	C	237617789	A	C	237617789	3	2	232	1	0	0	0	0	1	0	0	0	13855	159	6	5	1449	5	RYR2	1	237617789	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3163202	237617789	11632832	270	15796										
RYR2	0	genome.wustl.edu	37	chr1	237756828	237756828	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaacctgctaatgtctgggTgggctggattacatcagatt	12	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	237756828	237756828	T	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.4322	p.V1441G	1.000	pfam_SPRY_rcpt,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	141	0	0	150	32	17.49	-	-	-	G	237756828	T	G	237756828	3	3	232	1	0	0	0	0	1	0	0	0	13855	1696	59	5	4458	5	RYR2	1	237756828	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	139039	237756828	11493793	271	15797										
ZP4	0	genome.wustl.edu	37	chr1	238051746	238051746	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcgagagatgggtgaaggTgcacatggcagtctgtcccg	15	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	238051746	238051746	T	G	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	silent	c.465	p.A155	0.001	pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	140	0	0	200	26	11.5	-	-	-	G	238051746	T	G	238051746	2	3	232	1	0	0	0	0	0	0	0	1	18311	1683	59	5		5	ZP4	1	238051746	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	294918	238051746	11198875	272	15798										
OR11L1	0	genome.wustl.edu	37	chr1	248004405	248004405	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttgatttcaggcaacaggTggggactgggacacacatac	13	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248004405	248004405	T	G	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.794	p.H265P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	120	1	0.82	193	26	11.82	-	-	-	G	248004405	T	G	248004405	3	3	232	1	0	0	0	0	1	0	0	0	11003	1696	59	5	178	5	OR11L1	1	248004405	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9952659	248004405	1246216	273	15799										
OR11L1	0	genome.wustl.edu	37	chr1	248004508	248004508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtctttctccggccagaggTggaagggattctcaatatgg	14	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248004508	248004508	T	G	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.691	p.T231P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	131	1	0.75	212	41	16.14	-	-	-	G	248004508	T	G	248004508	3	3	232	1	0	0	0	0	1	0	0	0	11003	1696	59	5	281	5	OR11L1	1	248004508	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	103	248004508	1246113	274	15800										
TRIM58	0	genome.wustl.edu	37	chr1	248039402	248039402	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtgggagaaggagcagagTggggtttaggggtctgtcaa	20	3	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248039402	248039402	T	G	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	missense	c.1072	p.W358G	0.981	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	287	1	0.35	521	93	15.1	-	-	-	G	248039402	T	G	248039402	3	3	232	1	0	0	0	0	1	0	0	0	16627	1696	59	5	1094	5	TRIM58	1	248039402	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	34894	248039402	1211219	275	15801										
OR2AK2	0	genome.wustl.edu	37	chr1	248128775	248128775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctctttgtcgtcattgccAccctctttacagttgctctg	6	13	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248128775	248128775	A	C	SNP	OR2AK2	ENST00000366480	human	ensembl	69_37n	1	known	missense	c.142	p.T48P	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	518	2	0.38	583	65	10	-	-	-	C	248128775	A	C	248128775	3	2	232	1	0	0	0	0	1	0	0	0	11059	159	6	5	144	5	OR2AK2	1	248128775	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	89373	248128775	1121846	276	15802										
OR2M5	0	genome.wustl.edu	37	chr1	248309180	248309180	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttactacctgttcctctcAcctcatggtggtgggaatgt	9	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248309180	248309180	A	C	SNP	OR2M5	ENST00000366476	human	ensembl	69_37n	1	known	missense	c.731	p.H244P	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727	428	0	0	560	79	12.36	-	-	-	C	248309180	A	C	248309180	3	2	232	1	0	0	0	0	1	0	0	0	11086	159	6	5	733	5	OR2M5	1	248309180	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	180405	248309180	941441	277	15803										
OR14C36	0	genome.wustl.edu	37	chr1	248512218	248512218	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctcattgtgaccgtcaccAcctgtgacagcagccttcac	7	16	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248512218	248512218	A	C	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	missense	c.142	p.T48P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	251	0	0	279	35	11.11	-	-	-	C	248512218	A	C	248512218	3	2	232	1	0	0	0	0	1	0	0	0	11019	159	6	5	144	5	OR14C36	1	248512218	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	203038	248512218	738403	278	15804										
OR14C36	0	genome.wustl.edu	37	chr1	248512856	248512856	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttctgtgtacctcaggccAcctgcgatacctgcagccac	8	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248512856	248512856	A	C	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	silent	c.780	p.P260	0.749	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	183	0	0	183	30	14.02	-	-	-	C	248512856	A	C	248512856	2	2	232	1	0	0	0	0	0	0	0	1	11019	146	6	5		5	OR14C36	1	248512856	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	638	248512856	737765	279	15805										
OR2T1	0	genome.wustl.edu	37	chr1	248569616	248569616	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagatttgcgccttcatacAcccatgtacttcctcctcag	5	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	1	248569616	248569616	A	C	SNP	OR2T1	ENST00000366474	human	ensembl	69_37n	1	known	silent	c.321	p.T107	0.007	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	219	0	0	294	37	11.14	-	-	-	C	248569616	A	C	248569616	2	2	232	1	0	0	0	0	0	0	0	1	11089	146	6	5		5	OR2T1	1	248569616	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	56760	248569616	681005	280	15806										
KIDINS220	0	genome.wustl.edu	37	chr2	8926448	8926448	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagccagagaagtttctccAcctacactggacagtctatt	7	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	8926448	8926448	A	C	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	silent	c.1827	p.G609	0.601	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	786	2	0.25	506	65	11.38	-	-	-	C	8926448	A	C	8926448	2	2	232	1	0	0	0	0	0	0	0	1	8323	146	6	5		5	KIDINS220	2	8926448	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		8926448	234272925	281	15807										
KIDINS220	0	genome.wustl.edu	37	chr2	8930118	8930118	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctccacaaagtagcagggTaagaaacactatgagccatg	9	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	8930118	8930118	T	G	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.1513	p.T505P	0.997	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	616	2	0.32	341	50	12.76	-	-	-	G	8930118	T	G	8930118	3	3	232	1	0	0	0	0	1	0	0	0	8323	1638	57	5	3870	5	KIDINS220	2	8930118	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3670	8930118	234269255	282	15808										
KIDINS220	0	genome.wustl.edu	37	chr2	8940593	8940593	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgaacaatttcaacatgaccAcctctgacagcgccaatcaa	5	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	8940593	8940593	A	C	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	silent	c.837	p.G279	0.996	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	375	0	0	252	54	17.65	-	-	-	C	8940593	A	C	8940593	2	2	232	1	0	0	0	0	0	0	0	1	8323	146	6	5		5	KIDINS220	2	8940593	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10475	8940593	234258780	283	15809										
KLF11	0	genome.wustl.edu	37	chr2	10188218	10188218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaaaggccagcaggcagggTggcctggtgcagttcagact	15	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	10188218	10188218	T	G	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	1	known	missense	c.754	p.W252G	0.114	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	63	0	0	54	8	12.9	-	-	-	G	10188218	T	G	10188218	3	3	232	1	0	0	0	0	1	0	0	0	8392	1696	59	5	764	5	KLF11	2	10188218	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1247625	10188218	233011155	284	15810										
TRIB2	0	genome.wustl.edu	37	chr2	12864848	12864848	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccttcgtctgtttccacccTccccctaccagcctcatatt	3	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	12864848	12864848	T	C	SNP	TRIB2	ENST00000405331	human	ensembl	69_37n	1	putative	silent	c.657	p.P219	0.001	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	346	2	0.57	285	54	15.88	-	-	-	C	12864848	T	C	12864848	2	2	232	1	0	0	0	0	0	0	0	1	16579	1566	54	5		5	TRIB2	2	12864848	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2676630	12864848	230334525	285	15811										
NBAS	0	genome.wustl.edu	37	chr2	15506743	15506743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcaaggcccagaagcttggTggattgtttatagcatgtgg	14	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	15506743	15506743	T	G	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.3778	p.T1260P	0.827	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	151	0	0	155	25	13.89	-	-	-	G	15506743	T	G	15506743	3	3	232	1	0	0	0	0	1	0	0	0	10258	1696	59	5	3421	5	NBAS	2	15506743	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2641895	15506743	227692630	286	15812										
KCNS3	0	genome.wustl.edu	37	chr2	18113138	18113138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattgagaacatgggcaaggTggtccagatcctacggctta	12	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	18113138	18113138	T	G	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	1	known	missense	c.863	p.V288G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	252	2	0.79	198	28	12.39	-	-	-	G	18113138	T	G	18113138	3	3	232	1	0	0	0	0	1	0	0	0	8144	1696	59	5	865	5	KCNS3	2	18113138	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2606395	18113138	225086235	287	15813										
APOB	0	genome.wustl.edu	37	chr2	21231647	21231647	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgctagaggaatgtcctccAccttcagatccctgagatat	8	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	21231647	21231647	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.8093	p.V2698G	0.008	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	363	1	0.27	252	28	10	-	-	-	C	21231647	A	C	21231647	3	2	232	1	0	0	0	0	1	0	0	0	787	159	6	5	5614	5	APOB	2	21231647	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3118509	21231647	221967726	288	15814										
APOB	0	genome.wustl.edu	37	chr2	21236186	21236186	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcgtggagaggtctagaacAcccaggagaggcacttgcag	14	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	21236186	21236186	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.4062	p.G1354	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	248	0	0	155	18	10.34	-	-	-	C	21236186	A	C	21236186	2	2	232	1	0	0	0	0	0	0	0	1	787	146	6	5		5	APOB	2	21236186	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4539	21236186	221963187	289	15815										
TP53I3	0	genome.wustl.edu	37	chr2	24302509	24302509	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaataagattaactccagcAccttccataggaaacagatt	6	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	24302509	24302509	A	C	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	silent	c.621	p.G207	0.999	pfam_ADH_C,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	149	1	0.67	108	25	18.8	-	-	-	C	24302509	A	C	24302509	2	2	232	1	0	0	0	0	0	0	0	1	16483	173	6	5		5	TP53I3	2	24302509	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3066323	24302509	218896864	290	15816										
ASXL2	0	genome.wustl.edu	37	chr2	25966553	25966553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caataaagatgttaaaggggAgggagttacagccactggca	13	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	25966553	25966553	A	G	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.2653	p.S885P	0.122	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	189	0	0	232	35	13.11	-	-	-	G	25966553	A	G	25966553	3	3	232	1	0	0	0	0	1	0	0	0	1071	304	11	5	1658	5	ASXL2	2	25966553	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1664044	25966553	217232820	291	15817										
DPYSL5	0	genome.wustl.edu	37	chr2	27167641	27167641	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acactcctacccggcccgtcAcccggcatgggggcatgagg	13	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27167641	27167641	A	C	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	missense	c.1558	p.T520P	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	69	0	0	71	18	20	-	-	-	C	27167641	A	C	27167641	3	2	232	1	0	0	0	0	1	0	0	0	4785	159	6	5	1600	5	DPYSL5	2	27167641	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1201088	27167641	216031732	292	15818										
AGBL5	0	genome.wustl.edu	37	chr2	27276397	27276397	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttgtgcgcacactgcccAcccggccacgctgggaacgc	11	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27276397	27276397	A	C	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	missense	c.343	p.T115P	0.693	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	75	0	0	47	15	24.19	-	-	-	C	27276397	A	C	27276397	3	2	232	1	0	0	0	0	1	0	0	0	378	159	6	5	349	5	AGBL5	2	27276397	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	108756	27276397	215922976	293	15819										
KHK	0	genome.wustl.edu	37	chr2	27322065	27322065	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcttccactgcccacaggTgtttgtcagcaaagatgtgg	10	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27322065	27322065	T	G	SNP	KHK	ENST00000260598	human	ensembl	69_37n	1	known	missense	c.566	p.V189G	1.000	pfam_PfkB	pfam_PfkB	-	no_errors	KHK	HGNC	ENSG00000138030	40	0	0	44	16	26.67	-	-	-	G	27322065	T	G	27322065	3	3	232	1	0	0	0	0	1	0	0	0	8201	1710	59	5	727	5	KHK	2	27322065	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	45668	27322065	215877308	294	15820										
PREB	0	genome.wustl.edu	37	chr2	27356109	27356109	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaccgcctgcaaattctctAccctgagttctagcccctcg	7	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27356109	27356109	A	C	SNP	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	missense	c.422	p.V141G	0.044	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	119	1	0.82	71	15	17.05	-	-	-	C	27356109	A	C	27356109	3	2	232	1	0	0	0	0	1	0	0	0	12551	391	14	5	859	5	PREB	2	27356109	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34044	27356109	215843264	295	15821										
DNAJC5G	0	genome.wustl.edu	37	chr2	27499638	27499638	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacaccggctgtccaaaagTgagatgagcctctatgcagt	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27499638	27499638	T	G	SNP	DNAJC5G	ENST00000296097	human	ensembl	69_37n	1	known	missense	c.42	p.S14R	0.014	superfamily_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5G	HGNC	ENSG00000163793	71	0	0	35	8	18.6	-	-	-	G	27499638	T	G	27499638	3	3	232	1	0	0	0	0	1	0	0	0	4687	1693	59	5	44	5	DNAJC5G	2	27499638	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	143529	27499638	215699735	296	15822										
GTF3C2	0	genome.wustl.edu	37	chr2	27556561	27556561	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggtgttggtggggcctggTaggcatccaggccaggctaa	17	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27556561	27556561	T	G	SNP	GTF3C2	ENST00000264720	human	ensembl	69_37n	-1	known	missense	c.1693	p.T565P	0.974	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207	216	1	0.46	148	23	13.45	-	-	-	G	27556561	T	G	27556561	3	3	232	1	0	0	0	0	1	0	0	0	6924	1638	57	5	1074	5	GTF3C2	2	27556561	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	56923	27556561	215642812	297	15823										
NRBP1	0	genome.wustl.edu	37	chr2	27663995	27663995	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctctcttccctccctaggTggtgctgatgcagtgcaaca	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27663995	27663995	T	G	SNP	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	missense	c.1331	p.V444G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	347	2	0.57	243	28	10.33	-	-	-	G	27663995	T	G	27663995	3	3	232	1	0	0	0	0	1	0	0	0	10715	1710	59	5	1385	5	NRBP1	2	27663995	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	107434	27663995	215535378	298	15824										
IFT172	0	genome.wustl.edu	37	chr2	27700150	27700150	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcattattcccatattccAccagggttagctctccggca	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27700150	27700150	A	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.1259	p.V420G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	276	0	0	278	34	10.86	-	-	-	C	27700150	A	C	27700150	3	2	232	1	0	0	0	0	1	0	0	0	7611	159	6	5	4134	5	IFT172	2	27700150	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36155	27700150	215499223	299	15825										
IFT172	0	genome.wustl.edu	37	chr2	27700950	27700950	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcctttcctaggattttcAcctcttccacctcatagcca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27700950	27700950	A	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.1079	p.V360G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	424	4	0.93	341	71	17.23	-	-	-	C	27700950	A	C	27700950	3	2	232	1	0	0	0	0	1	0	0	0	7611	159	6	5	4322	5	IFT172	2	27700950	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	800	27700950	215498423	300	15826	168	2								
IFT172	0	genome.wustl.edu	37	chr2	27700959	27700959	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaggattttcacctcttccAcctcatagccatagtgtgac							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27700959	27700959	A	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.1070	p.V357G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	432	3	0.69	323	76	19.05	-	-	-	C	27700959	A	C	27700959	3	2	232	1	0	0	0	0	1	0	0	0	7611	159	6	5	4331	5	IFT172	2	27700959	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	27700959	215498414	301	15827	168	2								
IFT172	0	genome.wustl.edu	37	chr2	27707130	27707130	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcagatgactttcttgtcAcccctgccaaacaaaagaag	7	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27707130	27707130	A	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	silent	c.300	p.G100	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	138	0	0	90	16	15.09	-	-	-	C	27707130	A	C	27707130	2	2	232	1	0	0	0	0	0	0	0	1	7611	146	6	5		5	IFT172	2	27707130	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6171	27707130	215492243	302	15828										
GCKR	0	genome.wustl.edu	37	chr2	27730560	27730560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccccagggtccccagttcAccttctcccaggaggacttc	9	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27730560	27730560	A	C	SNP	GCKR	ENST00000264717	human	ensembl	69_37n	1	known	missense	c.1156	p.T386P	0.996	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734	81	0	0	72	14	16.09	-	-	-	C	27730560	A	C	27730560	3	2	232	1	0	0	0	0	1	0	0	0	6344	159	6	5	1210	5	GCKR	2	27730560	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	23430	27730560	215468813	303	15829										
C2orf16	0	genome.wustl.edu	37	chr2	27802763	27802763	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataccccccgatgtgcctccAcctctagcttcaggtctagt	7	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27802763	27802763	A	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	silent	c.3324	p.P1108	1.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	174	0	0	155	25	13.89	-	-	-	C	27802763	A	C	27802763	2	2	232	1	0	0	0	0	0	0	0	1	2177	146	6	5		5	C2orf16	2	27802763	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	72203	27802763	215396610	304	15830										
GPN1	0	genome.wustl.edu	37	chr2	27862911	27862911	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttatgatgctttttggcaggTggtgggtgtctctgctgttc	14	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	27862911	27862911	T	G	SNP	GPN1	ENST00000264718	human	ensembl	69_37n	1	known	missense	c.761	p.V254G	1.000	pfam_Uncharacterised_ATP-bd,pfam_ProtSyn_GTP-bd	pfam_Uncharacterised_ATP-bd,pfam_ProtSyn_GTP-bd,smart_AAA+_ATPase	-	no_errors	GPN1	HGNC	ENSG00000198522	402	0	0	279	73	20.62	-	-	-	G	27862911	T	G	27862911	3	3	232	1	0	0	0	0	1	0	0	0	6667	1710	59	5	882	5	GPN1	2	27862911	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	60148	27862911	215336462	305	15831										
PLB1	0	genome.wustl.edu	37	chr2	28828763	28828763	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttgccccagactgcatccAcccaaatcagaaattccact	4	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	28828763	28828763	A	C	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	missense	c.2972	p.H991P	0.997	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	235	0	0	209	24	10.3	-	-	-	C	28828763	A	C	28828763	3	2	232	1	0	0	0	0	1	0	0	0	12098	159	6	5	3204	5	PLB1	2	28828763	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	965852	28828763	214370610	306	15832										
LCLAT1	0	genome.wustl.edu	37	chr2	30863242	30863242	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accggacagagtgtcattccAccttgcaagtctgaactcag	9	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	30863242	30863242	A	C	SNP	LCLAT1	ENST00000309052	human	ensembl	69_37n	1	known	silent	c.1002	p.P334	0.019	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LCLAT1	HGNC	ENSG00000172954	265	0	0	216	35	13.94	-	-	-	C	30863242	A	C	30863242	2	2	232	1	0	0	0	0	0	0	0	1	8731	146	6	5		5	LCLAT1	2	30863242	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2034479	30863242	212336131	307	15833										
GALNT14	0	genome.wustl.edu	37	chr2	31165080	31165080	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactcaccaaagttctccccAccccagatgtccatgtccat	5	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	31165080	31165080	A	C	SNP	GALNT14	ENST00000349752	human	ensembl	69_37n	-1	known	silent	c.918	p.G306	0.336	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089	131	1	0.76	91	17	15.74	-	-	-	C	31165080	A	C	31165080	2	2	232	1	0	0	0	0	0	0	0	1	6262	146	6	5		5	GALNT14	2	31165080	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	301838	31165080	212034293	308	15834										
BIRC6	0	genome.wustl.edu	37	chr2	32688310	32688310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtggactatcatctgggaCagttggggaagcctcgacag	15	8	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	32688310	32688310	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.4802	p.T1601I	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	31	0	0	39	8	17.02	-	-	-	T	32688310	C	T	32688310	3	4	232	1	0	0	0	0	1	0	0	0	1443	478	17	4	4896	4	BIRC6	2	32688310	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	1523230	32688310	210511063	309	15835										
CRIM1	0	genome.wustl.edu	37	chr2	36691721	36691721	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtttccccgtgtgtgaggTgggatccactccccgcatag	13	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	36691721	36691721	T	G	SNP	CRIM1	ENST00000280527	human	ensembl	69_37n	1	known	missense	c.914	p.V305G	1.000	NULL	pfam_VWF_C,pfam_Prot_inh_I15_antistasin-like,superfamily_Prot_inh_I14/15_hirudin/antisn,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	271	1	0.37	223	34	13.23	-	-	-	G	36691721	T	G	36691721	3	3	232	1	0	0	0	0	1	0	0	0	3903	1696	59	5	932	5	CRIM1	2	36691721	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4003411	36691721	206507652	310	15836										
FEZ2	0	genome.wustl.edu	37	chr2	36787957	36787957	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacctgaatttccaaaggTgtggcggaggccattctgaa	11	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	36787957	36787957	T	G	SNP	FEZ2	ENST00000379245	human	ensembl	69_37n	-1	novel	missense	c.955	p.T319P	1.000	NULL	pfam_FEZ	-	no_errors	FEZ2	HGNC	ENSG00000171055	265	0	0	213	26	10.79	-	-	-	G	36787957	T	G	36787957	3	3	232	1	0	0	0	0	1	0	0	0	5870	1696	59	5	203	5	FEZ2	2	36787957	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	96236	36787957	206411416	311	15837										
STRN	0	genome.wustl.edu	37	chr2	37129880	37129880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatagtatctgtataacccAcctcctgtagatacctgtgt	7	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	37129880	37129880	A	C	SNP	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	missense	c.506	p.V169G	1.000	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	325	0	0	160	32	16.67	-	-	-	C	37129880	A	C	37129880	3	2	232	1	0	0	0	0	1	0	0	0	15420	159	6	5	1892	5	STRN	2	37129880	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	341923	37129880	206069493	312	15838										
QPCT	0	genome.wustl.edu	37	chr2	37594515	37594515	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggcatcgaccccgcacccAcctggagcgagaggcaccag	12	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	37594515	37594515	A	C	SNP	QPCT	ENST00000338415	human	ensembl	69_37n	1	known	silent	c.687	p.P229	0.884	pfam_Peptidase_M28	pfam_Peptidase_M28	-	no_errors	QPCT	HGNC	ENSG00000115828	152	1	0.65	129	42	24.14	-	-	-	C	37594515	A	C	37594515	2	2	232	1	0	0	0	0	0	0	0	1	12957	146	6	5		5	QPCT	2	37594515	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	464635	37594515	205604858	313	15839										
CDC42EP3	0	genome.wustl.edu	37	chr2	37873463	37873463	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgaacacagagtccgaggTgctgttggcccggaagaact	14	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	37873463	37873463	T	G	SNP	CDC42EP3	ENST00000295324	human	ensembl	69_37n	-1	known	missense	c.268	p.T90P	1.000	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP3	HGNC	ENSG00000163171	154	0	0	103	18	14.88	-	-	-	G	37873463	T	G	37873463	3	3	232	1	0	0	0	0	1	0	0	0	3106	1696	59	5	500	5	CDC42EP3	2	37873463	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	278948	37873463	205325910	314	15840										
SOS1	0	genome.wustl.edu	37	chr2	39262410	39262410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggccagaagcagcctgggTaaaacatattgaacagcttc	12	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	39262410	39262410	T	G	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	missense	c.1017	p.L339F	0.991	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	95	0	0	55	10	15.38	-	-	-	G	39262410	T	G	39262410	3	3	232	1	0	0	0	0	1	0	0	0	15025	1635	57	5	3048	5	SOS1	2	39262410	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1388947	39262410	203936963	315	15841										
MSH6	0	genome.wustl.edu	37	chr2	48026682	48026682	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaggatcattaccaagggTacacagacttacagtgtgct	10	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	48026682	48026682	T	G	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	silent	c.1560	p.G520	0.977	pfam_DNA_mismatch_repair_MutS-lik_N,superfamily_DNA_mismatch_repair_MutS_N,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	220	2	0.89	199	25	11.16	-	-	-	G	48026682	T	G	48026682	2	3	232	1	0	0	0	0	0	0	0	1	9946	1625	57	5		5	MSH6	2	48026682	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8764272	48026682	195172691	316	15842										
MSH6	0	genome.wustl.edu	37	chr2	48026709	48026709	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttacagtgtgctggaaggTgatccctctgagaactacag	11	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	48026709	48026709	T	G	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	silent	c.1587	p.G529	0.999	superfamily_DNA_mismatch_repair_MutS_connt,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	243	1	0.41	197	46	18.93	-	-	-	G	48026709	T	G	48026709	2	3	232	1	0	0	0	0	0	0	0	1	9946	1683	59	5		5	MSH6	2	48026709	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	27	48026709	195172664	317	15843										
LHCGR	0	genome.wustl.edu	37	chr2	48914907	48914907	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatgtggacaacttcaaggTggattgagaaggcttatttg	12	5	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	48914907	48914907	T	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.2029	p.T677P	0.000	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	274	0	0	229	48	17.14	-	-	-	G	48914907	T	G	48914907	3	3	232	1	0	0	0	0	1	0	0	0	8817	1696	59	5	74	5	LHCGR	2	48914907	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	888198	48914907	194284466	318	15844										
FSHR	0	genome.wustl.edu	37	chr2	49190419	49190419	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgggcaggcagatgctcAccttcatgtagctgctgatg	12	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	49190419	49190419	A	C	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.1541	p.V514G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	134	1	0.74	65	11	14.47	-	-	-	C	49190419	A	C	49190419	3	2	232	1	0	0	0	0	1	0	0	0	6122	159	6	5	550	5	FSHR	2	49190419	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	275512	49190419	194008954	319	15845										
NRXN1	0	genome.wustl.edu	37	chr2	50318496	50318496	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgatcactggccagctgtccAcctgcaacgtggcattgcca	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	50318496	50318496	A	C	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.3659	p.V1220G	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	199	0	0	148	23	13.45	-	-	-	C	50318496	A	C	50318496	3	2	232	1	0	0	0	0	1	0	0	0	10738	159	6	5	860	5	NRXN1	2	50318496	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1128077	50318496	192880877	320	15846										
EFEMP1	0	genome.wustl.edu	37	chr2	56145146	56145146	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggttgacacacttcattccAcctttacaagcgtctgggac	8	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	56145146	56145146	A	C	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	silent	c.171	p.G57	0.975	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	106	1	0.93	70	16	18.6	-	-	-	C	56145146	A	C	56145146	2	2	232	1	0	0	0	0	0	0	0	1	4976	146	6	5		5	EFEMP1	2	56145146	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5826650	56145146	187054227	321	15847										
EFEMP1	0	genome.wustl.edu	37	chr2	56149694	56149694	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgggagaggctgaggctccAccatactcaacttccaatct	10	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	56149694	56149694	A	C	SNP	EFEMP1	ENST00000497698	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFEMP1	HGNC	ENSG00000115380	41	0	0	25	10	28.57	-	-	-	C	56149694	A	C	56149694	1	2	232	0	1	0	0	0	0	0	0	0	4976	174	6	5		5	EFEMP1	2	56149694	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4548	56149694	187049679	322	15848										
REL	0	genome.wustl.edu	37	chr2	61149060	61149060	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctggtcatcagtggcccAccccaccccacgctcaggca	9	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	61149060	61149060	A	C	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	missense	c.1250	p.H417P	0.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	215	1	0.46	168	26	13.4	-	-	-	C	61149060	A	C	61149060	3	2	232	1	0	0	0	0	1	0	0	0	13298	159	6	5	1292	5	REL	2	61149060	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4999366	61149060	182050313	323	15849										
FAM161A	0	genome.wustl.edu	37	chr2	62066908	62066908	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttacagcctgttcaggacAcctggggttcctgcatccac	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	62066908	62066908	A	C	SNP	FAM161A	ENST00000405894	human	ensembl	69_37n	-1	known	missense	c.1231	p.C411G	0.000	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264	100	1	0.99	103	16	13.45	-	-	-	C	62066908	A	C	62066908	3	2	232	1	0	0	0	0	1	0	0	0	5512	159	6	5	767	5	FAM161A	2	62066908	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	917848	62066908	181132465	324	15850										
EHBP1	0	genome.wustl.edu	37	chr2	62974547	62974547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcaaccagataaactggTggtagtttggaccagaagaa	12	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	62974547	62974547	T	G	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.122	p.V41G	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	329	0	0	227	27	10.63	-	-	-	G	62974547	T	G	62974547	3	3	232	1	0	0	0	0	1	0	0	0	5010	1696	59	5	128	5	EHBP1	2	62974547	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	907639	62974547	180224826	325	15851										
EHBP1	0	genome.wustl.edu	37	chr2	63182766	63182766	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcacaataccaacacagccAccccattctgcaacaggcag	6	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	63182766	63182766	A	C	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.2536	p.T846P	0.997	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	88	0	0	100	18	15.25	-	-	-	C	63182766	A	C	63182766	3	2	232	1	0	0	0	0	1	0	0	0	5010	159	6	5	2590	5	EHBP1	2	63182766	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	208219	63182766	180016607	326	15852										
EHBP1	0	genome.wustl.edu	37	chr2	63217921	63217921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccacaggtggcaaattcAccctccagtgctgcccagaa	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	63217921	63217921	A	C	SNP	EHBP1	ENST00000422032	human	ensembl	69_37n	1	novel	missense	c.370	p.T124P	0.856	NULL	NULL	-	no_start_codon:pseudogene	EHBP1	HGNC	ENSG00000115504	114	0	0	117	21	15.11	-	-	-	C	63217921	A	C	63217921	3	2	232	1	0	0	0	0	1	0	0	0	5010	146	6	5	2958	5	EHBP1	2	63217921	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	35155	63217921	179981452	327	15853										
SPRED2	0	genome.wustl.edu	37	chr2	65561834	65561834	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccaaacttcctattatcgAccttccagtgatgaaacgtt	6	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	65561834	65561834	A	C	SNP	SPRED2	ENST00000356388	human	ensembl	69_37n	-1	known	missense	c.278	p.V93G	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369	177	0	0	120	23	16.08	-	-	-	C	65561834	A	C	65561834	3	2	232	1	0	0	0	0	1	0	0	0	15184	275	10	5	994	5	SPRED2	2	65561834	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2343913	65561834	177637539	328	15854										
WDR92	0	genome.wustl.edu	37	chr2	68371769	68371769	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttctccaattcctagtccAcctatgccatctatggcatt	4	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	68371769	68371769	A	C	SNP	WDR92	ENST00000295121	human	ensembl	69_37n	-1	known	silent	c.363	p.G121	0.991	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR92	HGNC	ENSG00000243667	223	0	0	162	20	10.99	-	-	-	C	68371769	A	C	68371769	2	2	232	1	0	0	0	0	0	0	0	1	17436	146	6	5		5	WDR92	2	68371769	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2809935	68371769	174827604	329	15855										
PLEK	0	genome.wustl.edu	37	chr2	68607934	68607934	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggagagagatgcctgggTtcgggatatcaagaaggcca	17	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	68607934	68607934	T	G	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	1	known	missense	c.278	p.V93G	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	319	1	0.31	218	25	10.2	-	-	-	G	68607934	T	G	68607934	3	3	232	1	0	0	0	0	1	0	0	0	12127	1725	60	5	288	5	PLEK	2	68607934	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	236165	68607934	174591439	330	15856										
PLEK	0	genome.wustl.edu	37	chr2	68620343	68620343	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagttcatcttgagagaagAccctgcctacctgcactact	8	12	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	68620343	68620343	A	C	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	1	known	missense	c.812	p.D271A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	433	2	0.46	395	64	13.91	-	-	-	C	68620343	A	C	68620343	3	2	232	1	0	0	0	0	1	0	0	0	12127	275	10	5	838	5	PLEK	2	68620343	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12409	68620343	174579030	331	15857										
AAK1	0	genome.wustl.edu	37	chr2	69769717	69769717	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgggcaacagcttcacaggTatcacaaaatatctggagca	10	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	69769717	69769717	T	G	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.472	p.T158P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	168	0	0	123	27	18	-	-	-	G	69769717	T	G	69769717	3	3	232	1	0	0	0	0	1	0	0	0	16	1638	57	5	2485	5	AAK1	2	69769717	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1149374	69769717	173429656	332	15858										
TIA1	0	genome.wustl.edu	37	chr2	70444097	70444097	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttccaccaagccactggccAcccatctgttgaatggcgtt	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	70444097	70444097	A	C	SNP	TIA1	ENST00000433529	human	ensembl	69_37n	-1	known	silent	c.504	p.G168	0.999	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	149	1	0.67	99	22	18.18	-	-	-	C	70444097	A	C	70444097	2	2	232	1	0	0	0	0	0	0	0	1	15982	146	6	5		5	TIA1	2	70444097	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	674380	70444097	172755276	333	15859										
CLEC4F	0	genome.wustl.edu	37	chr2	71039687	71039687	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaaataatataagcttccAccattgaacttccagccttg	5	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	71039687	71039687	A	C	SNP	CLEC4F	ENST00000272367	human	ensembl	69_37n	-1	known	silent	c.1431	p.G477	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672	174	1	0.57	170	24	12.37	-	-	-	C	71039687	A	C	71039687	2	2	232	1	0	0	0	0	0	0	0	1	3546	146	6	5		5	CLEC4F	2	71039687	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	595590	71039687	172159686	334	15860										
DYSF	0	genome.wustl.edu	37	chr2	71788923	71788923	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagacaccctctgccacccAcctggaccagtacctgtacc	7	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	71788923	71788923	A	C	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.2297	p.H766P	1.000	pfam_Ferlin_A-domain	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	73	0	0	35	11	23.91	-	-	-	C	71788923	A	C	71788923	3	2	232	1	0	0	0	0	1	0	0	0	4894	159	6	5	2486	5	DYSF	2	71788923	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	749236	71788923	171410450	335	15861										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73316382	73316382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgcgcgtgaactggatggTgacttcaatctcgccgcgtt	13	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73316382	73316382	T	G	SNP	RAB11FIP5	ENST00000258098	human	ensembl	69_37n	-1	known	missense	c.493	p.T165P	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	147	0	0	100	17	14.53	-	-	-	G	73316382	T	G	73316382	3	3	232	1	0	0	0	0	1	0	0	0	12980	1696	59	5	1484	5	RAB11FIP5	2	73316382	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1527459	73316382	169882991	336	15862										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73316524	73316524	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggtaccaggcactgcccagAcccctccttgctctgagagc	10	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73316524	73316524	A	C	SNP	RAB11FIP5	ENST00000493523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	72	0	0	40	15	27.27	-	-	-	C	73316524	A	C	73316524	1	2	232	0	1	0	0	0	0	0	0	0	12980	290	10	5		5	RAB11FIP5	2	73316524	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	142	73316524	169882849	337	15863										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73316579	73316579	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccaaaggctcctgctctgAcccatcggcctgggcttcca	9	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73316579	73316579	A	C	SNP	RAB11FIP5	ENST00000493523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	46	0	0	34	8	19.05	-	-	-	C	73316579	A	C	73316579	1	2	232	0	1	0	0	0	0	0	0	0	12980	290	10	5		5	RAB11FIP5	2	73316579	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55	73316579	169882794	338	15864										
ALMS1	0	genome.wustl.edu	37	chr2	73678978	73678978	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaccagcaagagttgccagAtagtcatctaactgaagagg	10	8	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73678978	73678978	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.5321	p.D1774G	0.031	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	221	0	0	185	23	11	-	-	-	G	73678978	A	G	73678978	3	3	232	1	0	0	0	0	1	0	0	0	535	333	12	5	5351	5	ALMS1	2	73678978	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	362399	73678978	169520395	339	15865										
ALMS1	0	genome.wustl.edu	37	chr2	73717232	73717232	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaagtttactacctccatcActttttcatctcaccgacat	2	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73717232	73717232	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.8143	p.T2715P	0.999	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	472	2	0.42	327	41	11.02	-	-	-	C	73717232	A	C	73717232	3	2	232	1	0	0	0	0	1	0	0	0	535	159	6	5	8181	5	ALMS1	2	73717232	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38254	73717232	169482141	340	15866										
ALMS1	0	genome.wustl.edu	37	chr2	73799858	73799858	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagacagcctgagttgggTgacaggaaagaactgtcctt	13	8	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73799858	73799858	T	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	silent	c.10851	p.G3617	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	311	2	0.64	144	29	16.76	-	-	-	G	73799858	T	G	73799858	2	3	232	1	0	0	0	0	0	0	0	1	535	1683	59	5		5	ALMS1	2	73799858	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	82626	73799858	169399515	341	15867										
ALMS1	0	genome.wustl.edu	37	chr2	73799881	73799881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggaaagaactgtccttggTggaccgacttgatcgtttgg	13	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73799881	73799881	T	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.10874	p.V3625G	1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	325	1	0.31	164	23	12.11	-	-	-	G	73799881	T	G	73799881	3	3	232	1	0	0	0	0	1	0	0	0	535	1696	59	5	10936	5	ALMS1	2	73799881	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	23	73799881	169399492	342	15868										
DUSP11	0	genome.wustl.edu	37	chr2	73989847	73989847	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagtaattataaggataccAccttcttctatcctgggctg	9	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	73989847	73989847	A	C	SNP	DUSP11	ENST00000272444	human	ensembl	69_37n	-1	known	missense	c.1075	p.W359G	0.012	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	DUSP11	HGNC	ENSG00000144048	153	1	0.65	92	28	23.33	-	-	-	C	73989847	A	C	73989847	3	2	232	1	0	0	0	0	1	0	0	0	4846	159	6	5	62	5	DUSP11	2	73989847	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	189966	73989847	169209526	343	15869										
C2orf78	0	genome.wustl.edu	37	chr2	74043748	74043748	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacccagttcagccaaccctAcccagcctactgtccctcaa	4	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	74043748	74043748	A	C	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.2398	p.T800P	0.000	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	156	1	0.63	87	30	25.64	-	-	-	C	74043748	A	C	74043748	3	2	232	1	0	0	0	0	1	0	0	0	2215	391	14	5	2408	5	C2orf78	2	74043748	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	53901	74043748	169155625	344	15870										
CTNNA2	0	genome.wustl.edu	37	chr2	80816481	80816481	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaaaatagctgagcaggTggagatattccatcaagaga	12	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	80816481	80816481	T	G	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.2162	p.V721G	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	126	0	0	79	24	23.3	-	-	-	G	80816481	T	G	80816481	3	3	232	1	0	0	0	0	1	0	0	0	4045	1696	59	5	1906	5	CTNNA2	2	80816481	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6772733	80816481	162382892	345	15871										
RETSAT	0	genome.wustl.edu	37	chr2	85573318	85573318	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctgtgcccatttctcagAccttggagtccagctaccta	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	85573318	85573318	A	C	SNP	RETSAT	ENST00000475624	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RETSAT	HGNC	ENSG00000042445	43	0	0	33	12	26.67	-	-	-	C	85573318	A	C	85573318	1	2	232	0	1	0	0	0	0	0	0	0	13321	290	10	5		5	RETSAT	2	85573318	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4756837	85573318	157626055	346	15872										
ELMOD3	0	genome.wustl.edu	37	chr2	85617536	85617536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taccaaaatctccatcacccAccccctggagtctgctagtt	5	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	85617536	85617536	A	C	SNP	ELMOD3	ENST00000315658	human	ensembl	69_37n	1	known	missense	c.1091	p.H364P	0.000	NULL	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD3	HGNC	ENSG00000115459	242	0	0	72	19	20.88	-	-	-	C	85617536	A	C	85617536	3	2	232	1	0	0	0	0	1	0	0	0	5107	159	6	5	1129	5	ELMOD3	2	85617536	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	44218	85617536	157581837	347	15873										
GGCX	0	genome.wustl.edu	37	chr2	85778170	85778170	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctaggtgatgtcgtatacAccttatggtactcaccagca	10	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	85778170	85778170	A	C	SNP	GGCX	ENST00000233838	human	ensembl	69_37n	-1	known	missense	c.1766	p.V589G	1.000	superfamily_RmlC_Cupin	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	181	0	0	180	31	14.62	-	-	-	C	85778170	A	C	85778170	3	2	232	1	0	0	0	0	1	0	0	0	6408	159	6	5	522	5	GGCX	2	85778170	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	160634	85778170	157421203	348	15874										
GGCX	0	genome.wustl.edu	37	chr2	85780141	85780141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggtgggagcgggagtgcAccatcatgtcccaggaatag	16	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	85780141	85780141	A	C	SNP	GGCX	ENST00000233838	human	ensembl	69_37n	-1	known	missense	c.1208	p.V403G	1.000	pfam_VKG_COase	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	151	0	0	130	18	12.16	-	-	-	C	85780141	A	C	85780141	3	2	232	1	0	0	0	0	1	0	0	0	6408	159	6	5	1096	5	GGCX	2	85780141	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1971	85780141	157419232	349	15875										
USP39	0	genome.wustl.edu	37	chr2	85850817	85850817	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacagtgtccagtttagccAccatgttttcctcaacctcc	5	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	85850817	85850817	A	C	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.482	p.H161P	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	143	0	0	122	29	19.21	-	-	-	C	85850817	A	C	85850817	3	2	232	1	0	0	0	0	1	0	0	0	17167	159	6	5	496	5	USP39	2	85850817	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	70676	85850817	157348556	350	15876										
RNF103	0	genome.wustl.edu	37	chr2	86832518	86832518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acataatgagtgtggatcggAcccagcctcttctcctgcaa	9	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	86832518	86832518	A	C	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	missense	c.506	p.V169G	0.987	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	178	1	0.56	92	20	17.7	-	-	-	C	86832518	A	C	86832518	3	2	232	1	0	0	0	0	1	0	0	0	13509	275	10	5	1555	5	RNF103	2	86832518	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	981701	86832518	156366855	351	15877										
SNRNP200	0	genome.wustl.edu	37	chr2	96968985	96968985	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggcttgtagatgatgcccAccatctcatcaatgccctcc	8	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	96968985	96968985	A	C	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.293	p.V98G	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	271	0	0	318	52	14.02	-	-	-	C	96968985	A	C	96968985	3	2	232	1	0	0	0	0	1	0	0	0	14941	159	6	5	6289	5	SNRNP200	2	96968985	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10136467	96968985	146230388	352	15878										
ZAP70	0	genome.wustl.edu	37	chr2	98354250	98354250	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagggaagtggccgctcaagTggtacgcacccgaatgcatc	13	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	98354250	98354250	T	G	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	missense	c.1513	p.W505G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	97	1	1	56	13	18.84	-	-	-	G	98354250	T	G	98354250	3	3	232	1	0	0	0	0	1	0	0	0	17611	1696	59	5	1551	5	ZAP70	2	98354250	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1385265	98354250	144845123	353	15879										
VWA3B	0	genome.wustl.edu	37	chr2	98736089	98736089	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagccggcagatttttggTgtcatcttggaacagtgcgt	13	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	98736089	98736089	T	G	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	silent	c.405	p.G135	0.938	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	162	0	0	145	21	12.65	-	-	-	G	98736089	T	G	98736089	2	3	232	1	0	0	0	0	0	0	0	1	17338	1683	59	5		5	VWA3B	2	98736089	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	381839	98736089	144463284	354	15880										
MAP4K4	0	genome.wustl.edu	37	chr2	102480377	102480377	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctcccaaatttgcacaccAccatcttcgttctcaggacc	4	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	102480377	102480377	A	C	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.1961	p.H654P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	371	1	0.27	285	34	10.66	-	-	-	C	102480377	A	C	102480377	3	2	232	1	0	0	0	0	1	0	0	0	9333	159	6	5	2027	5	MAP4K4	2	102480377	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3744288	102480377	140718996	355	15881										
MAP4K4	0	genome.wustl.edu	37	chr2	102480405	102480405	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgttctcaggacccatgtccAccttcccgcagtgaggtgct	10	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	102480405	102480405	A	C	SNP	MAP4K4	ENST00000421882	human	ensembl	69_37n	1	novel	missense	c.1207	p.T403P	1.000	superfamily_Kinase-like_dom	pfam_Citron,superfamily_Kinase-like_dom,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K4	HGNC	ENSG00000071054	294	3	1	220	39	15	-	-	-	C	102480405	A	C	102480405	3	2	232	1	0	0	0	0	1	0	0	0	9333	146	6	5	2055	5	MAP4K4	2	102480405	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28	102480405	140718968	356	15882										
IL1R2	0	genome.wustl.edu	37	chr2	102632475	102632475	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccctgacctgagtgaattcAcccgtgacaaaactgacgtg	10	12	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	102632475	102632475	A	C	SNP	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	missense	c.475	p.T159P	0.045	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	106	0	0	94	19	16.81	-	-	-	C	102632475	A	C	102632475	3	2	232	1	0	0	0	0	1	0	0	0	7713	159	6	5	485	5	IL1R2	2	102632475	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	152070	102632475	140566898	357	15883										
IL1RL1	0	genome.wustl.edu	37	chr2	102959639	102959639	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaagggcaaaatcaaaggTatttttatattgaagagaac	10	3	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	102959639	102959639	T	G	SNP	IL1RL1	ENST00000233954	human	ensembl	69_37n	1	known	splice_site	c.824+2	e6+2	0.987	-	-	-	no_errors	IL1RL1	HGNC	ENSG00000115602	405	3	0.73	247	34	12.06	-	-	-	G	102959639	T	G	102959639	5	3	232	1	0	0	0	0	0	0	1	0	7717	1652	57	5	848	5	IL1RL1	2	102959639	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	327164	102959639	140239734	358	15884										
SLC9A2	0	genome.wustl.edu	37	chr2	103324778	103324778	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccacagcagagaaaagggcAcccagacgtcaggcttacta	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	103324778	103324778	A	C	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.2269	p.T757P	0.997	prints_Na/H_exchanger_2	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	328	3	0.9	193	39	16.74	-	-	-	C	103324778	A	C	103324778	3	2	232	1	0	0	0	0	1	0	0	0	14801	159	6	5	2315	5	SLC9A2	2	103324778	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	365139	103324778	139874595	359	15885										
GPR45	0	genome.wustl.edu	37	chr2	105859234	105859234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctccttctacgccaccagcAcctgcgtcctgtggctcagt	8	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	105859234	105859234	A	C	SNP	GPR45	ENST00000258456	human	ensembl	69_37n	1	known	missense	c.919	p.T307P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR45	HGNC	ENSG00000135973	194	0	0	94	20	17.54	-	-	-	C	105859234	A	C	105859234	3	2	232	1	0	0	0	0	1	0	0	0	6746	159	6	5	921	5	GPR45	2	105859234	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2534456	105859234	137340139	360	15886										
RGPD3	0	genome.wustl.edu	37	chr2	107040733	107040733	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttattgttgtgtctgaggcAccggccgcacctgtacctga	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	107040733	107040733	A	C	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.3690	p.G1230	0.002	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	532	1	0.19	361	58	13.78	-	-	-	C	107040733	A	C	107040733	2	2	232	1	0	0	0	0	0	0	0	1	13370	146	6	5		5	RGPD3	2	107040733	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1181499	107040733	136158640	361	15887										
SULT1C2	0	genome.wustl.edu	37	chr2	108910797	108910797	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcattgagtgggctcggccAccccaaccttctggtgagag	12	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	108910797	108910797	A	C	SNP	SULT1C2	ENST00000442801	human	ensembl	69_37n	1	known	missense	c.256	p.T86P	0.008	NULL	pfam_Sulfotransferase_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SULT1C2	HGNC	ENSG00000198203	231	0	0	217	49	18.28	-	-	-	C	108910797	A	C	108910797	3	2	232	1	0	0	0	0	1	0	0	0	15468	146	6	5	270	5	SULT1C2	2	108910797	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1870064	108910797	134288576	362	15888										
SEPT10	0	genome.wustl.edu	37	chr2	110303611	110303611	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagggctgccagggagggTggctgggcctcttacttctt	17	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	110303611	110303611	T	G	SNP	SEPT10	ENST00000468616	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEPT10	HGNC	ENSG00000186522	94	0	0	67	22	24.44	-	-	-	G	110303611	T	G	110303611	1	3	232	0	1	0	0	0	0	0	0	0	14148	1711	59	5		5	SEPT10	2	110303611	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1392814	110303611	132895762	363	15889										
SLC20A1	0	genome.wustl.edu	37	chr2	113417046	113417046	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcattccgtgccaaagaaggTgaacagaagggcgaagaaat	12	7	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	113417046	113417046	T	G	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	silent	c.1314	p.G438	0.278	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	188	0	0	158	28	15.05	-	-	-	G	113417046	T	G	113417046	2	3	232	1	0	0	0	0	0	0	0	1	14527	1683	59	5		5	SLC20A1	2	113417046	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3113435	113417046	129782327	364	15890										
IL1A	0	genome.wustl.edu	37	chr2	113539285	113539285	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccgttggttgctactaccAccatgctctccttgaaggta	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	113539285	113539285	A	C	SNP	IL1A	ENST00000263339	human	ensembl	69_37n	-1	known	missense	c.215	p.V72G	0.002	pfam_IL1_propep,prints_InterleukinIL1AB	pfam_IL1_propep,pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_InterleukinIL1A,prints_InterleukinIL1AB,prints_Interleukin_1	-	no_errors	IL1A	HGNC	ENSG00000115008	174	1	0.56	187	24	11.27	-	-	-	C	113539285	A	C	113539285	3	2	232	1	0	0	0	0	1	0	0	0	7704	159	6	5	616	5	IL1A	2	113539285	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	122239	113539285	129660088	365	15891										
IL1F10	0	genome.wustl.edu	37	chr2	113832338	113832338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaacagaggcttggcccgcAccaaggtccccattttcctg	9	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	113832338	113832338	A	C	SNP	IL1F10	ENST00000337569	human	ensembl	69_37n	1	known	missense	c.157	p.T53P	0.679	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_Interleukin_1,prints_InterleukinIL1B	-	no_errors	IL1F10	HGNC	ENSG00000136697	139	0	0	94	16	14.41	-	-	-	C	113832338	A	C	113832338	3	2	232	1	0	0	0	0	1	0	0	0	7706	159	6	5	167	5	IL1F10	2	113832338	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	293053	113832338	129367035	366	15892										
PAX8	0	genome.wustl.edu	37	chr2	114002140	114002140	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctccaccaccttgggggTggccaccttgggcttggagc	13	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	114002140	114002140	T	G	SNP	PAX8	ENST00000429538	human	ensembl	69_37n	-1	known	missense	c.253	p.T85P	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618	190	0	0	206	37	15.1	-	-	-	G	114002140	T	G	114002140	3	3	232	1	0	0	0	0	1	0	0	0	11558	1696	59	5	1010	5	PAX8	2	114002140	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	169802	114002140	129197233	367	15893										
DDX18	0	genome.wustl.edu	37	chr2	118579547	118579547	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctatggcttgataatgggTggcagtaacagatctgctga	12	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	118579547	118579547	T	G	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	silent	c.861	p.G287	0.012	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	207	1	0.48	192	35	15.35	-	-	-	G	118579547	T	G	118579547	2	3	232	1	0	0	0	0	0	0	0	1	4376	1683	59	5		5	DDX18	2	118579547	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4577407	118579547	124619826	368	15894										
INSIG2	0	genome.wustl.edu	37	chr2	118854309	118854309	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaaatgtgacgctctttccAcctgatgtgattgcaagcat	9	9	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	118854309	118854309	A	C	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	silent	c.177	p.P59	0.998	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	439	0	0	296	36	10.71	-	-	-	C	118854309	A	C	118854309	2	2	232	1	0	0	0	0	0	0	0	1	7820	146	6	5		5	INSIG2	2	118854309	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	274762	118854309	124345064	369	15895										
TMEM177	0	genome.wustl.edu	37	chr2	120438632	120438632	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagagcctcttccaagaggTgctacaggacataggtgttc	12	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	120438632	120438632	T	G	SNP	TMEM177	ENST00000272521	human	ensembl	69_37n	1	known	missense	c.203	p.V68G	0.998	NULL	NULL	-	no_errors	TMEM177	HGNC	ENSG00000144120	252	1	0.39	199	31	13.48	-	-	-	G	120438632	T	G	120438632	3	3	232	1	0	0	0	0	1	0	0	0	16189	1696	59	5	205	5	TMEM177	2	120438632	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1584323	120438632	122760741	370	15896										
CLASP1	0	genome.wustl.edu	37	chr2	122217669	122217669	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagttatcatactcagcagcAccagccaaaagtaaagatct	6	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	122217669	122217669	A	C	SNP	CLASP1	ENST00000452274	human	ensembl	69_37n	-1	known	missense	c.407	p.V136G	0.991	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CLASP1	HGNC	ENSG00000074054	164	0	0	141	30	17.54	-	-	-	C	122217669	A	C	122217669	3	2	232	1	0	0	0	0	1	0	0	0	3484	146	6	5	3719	5	CLASP1	2	122217669	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1779037	122217669	120981704	371	15897										
TSN	0	genome.wustl.edu	37	chr2	122522770	122522770	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgacccctccacatctccAccttcatcaatgagctggat	5	18	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	122522770	122522770	A	C	SNP	TSN	ENST00000389682	human	ensembl	69_37n	1	known	missense	c.514	p.T172P	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSN	HGNC	ENSG00000211460	301	2	0.66	343	48	12.28	-	-	-	C	122522770	A	C	122522770	3	2	232	1	0	0	0	0	1	0	0	0	16725	159	6	5	536	5	TSN	2	122522770	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	305101	122522770	120676603	372	15898										
ERCC3	0	genome.wustl.edu	37	chr2	128038189	128038189	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcctgcacgatggtgagcAcccttcggaacatcttggct	13	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	128038189	128038189	A	C	SNP	ERCC3	ENST00000285398	human	ensembl	69_37n	-1	known	missense	c.1361	p.V454G	1.000	pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	-	no_errors	ERCC3	HGNC	ENSG00000163161	81	0	0	75	37	33.04	-	-	-	C	128038189	A	C	128038189	3	2	232	1	0	0	0	0	1	0	0	0	5251	159	6	5	1015	5	ERCC3	2	128038189	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5515419	128038189	115161184	373	15899										
MYO7B	0	genome.wustl.edu	37	chr2	128378020	128378020	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgcctcggctgcttcccAccctcagagaggttcatgaa	9	15	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	128378020	128378020	A	C	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	silent	c.3426	p.P1142	0.929	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	34	0	0	63	17	21.25	-	-	-	C	128378020	A	C	128378020	2	2	232	1	0	0	0	0	0	0	0	1	10155	146	6	5		5	MYO7B	2	128378020	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	339831	128378020	114821353	374	15900										
WDR33	0	genome.wustl.edu	37	chr2	128471406	128471406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccaaagcgcttgtcagggTggaagtcatctggtctgctg	15	9	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	128471406	128471406	T	G	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3059	p.H1020P	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	166	0	0	129	26	16.77	-	-	-	G	128471406	T	G	128471406	3	3	232	1	0	0	0	0	1	0	0	0	17384	1696	59	5	971	5	WDR33	2	128471406	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	93386	128471406	114727967	375	15901										
WDR33	0	genome.wustl.edu	37	chr2	128522231	128522231	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaacactacttcagaaaggTgccagcaaaatggtgaatgt	9	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	128522231	128522231	T	G	SNP	WDR33	ENST00000409658	human	ensembl	69_37n	-1	known	missense	c.797	p.H266P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	46	0	0	37	8	17.78	-	-	-	G	128522231	T	G	128522231	3	3	232	1	0	0	0	0	1	0	0	0	17384	1696	59	5	3690	5	WDR33	2	128522231	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	50825	128522231	114677142	376	15902										
SPOPL	0	genome.wustl.edu	37	chr2	139326537	139326537	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acataatggaaacatcagggTggaagtccatgattcagtct	10	7	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	139326537	139326537	T	G	SNP	SPOPL	ENST00000280098	human	ensembl	69_37n	1	known	missense	c.1066	p.W356G	1.000	NULL	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228	788	1	0.13	606	108	15.08	-	-	-	G	139326537	T	G	139326537	3	3	232	1	0	0	0	0	1	0	0	0	15176	1696	59	5	1104	5	SPOPL	2	139326537	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10804306	139326537	103872836	377	15903										
LRP1B	0	genome.wustl.edu	37	chr2	141093364	141093364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccagtaaatgtttccagccAcccagtcaactgcaatgtcc	6	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	141093364	141093364	A	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.11936	p.V3979G	1.000	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	166	1	0.6	149	17	10.18	-	-	-	C	141093364	A	C	141093364	3	2	232	1	0	0	0	0	1	0	0	0	9021	159	6	5	1919	5	LRP1B	2	141093364	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1766827	141093364	102106009	378	15904										
LRP1B	0	genome.wustl.edu	37	chr2	141259275	141259275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttataactgaccggaaggTcttgacagtcttgagaacat	9	9	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	141259275	141259275	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.8831	p.D2944A	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	140	0	0	77	18	18.95	-	-	-	G	141259275	T	G	141259275	3	3	232	1	0	0	0	0	1	0	0	0	9021	1667	58	5	5116	5	LRP1B	2	141259275	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	165911	141259275	101940098	379	15905										
RIF1	0	genome.wustl.edu	37	chr2	152322145	152322145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgaaactggccatgatggTgaaacagagaatgagggcat	14	6	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	152322145	152322145	T	G	SNP	RIF1	ENST00000454583	human	ensembl	69_37n	1	known	missense	c.932	p.V311G	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIF1	HGNC	ENSG00000080345	99	0	0	94	17	15.32	-	-	-	G	152322145	T	G	152322145	3	3	232	1	0	0	0	0	1	0	0	0	13443	1683	59	5	6225	5	RIF1	2	152322145	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11062870	152322145	90877228	380	15906										
NEB	0	genome.wustl.edu	37	chr2	152390790	152390790	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggctcatcgactaccaggTggtatttatctttccgctgc	9	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	152390790	152390790	T	G	SNP	NEB	ENST00000427231	human	ensembl	69_37n	-1	known	missense	c.21356	p.H7119P	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	209	1	0.48	152	21	12.07	-	-	-	G	152390790	T	G	152390790	3	3	232	1	0	0	0	0	1	0	0	0	10374	1696	59	5	4490	5	NEB	2	152390790	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	68645	152390790	90808583	381	15907										
NEB	0	genome.wustl.edu	37	chr2	152500596	152500596	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcttcaatgttccgggcAccaatgtggtggccgagctg	12	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	152500596	152500596	A	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.7692	p.G2564	0.687	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	275	2	0.72	170	32	15.84	-	-	-	C	152500596	A	C	152500596	2	2	232	1	0	0	0	0	0	0	0	1	10374	146	6	5		5	NEB	2	152500596	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	109806	152500596	90698777	382	15908										
NEB	0	genome.wustl.edu	37	chr2	152550949	152550949	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catagtctttcttgtacatcAcctgcaaagacatcacacat	4	12	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	152550949	152550949	A	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.1784	p.V595G	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	188	0	0	114	23	16.67	-	-	-	C	152550949	A	C	152550949	3	2	232	1	0	0	0	0	1	0	0	0	10374	173	6	5	24554	5	NEB	2	152550949	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	50353	152550949	90648424	383	15909										
GPD2	0	genome.wustl.edu	37	chr2	157368742	157368742	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctttcagtataggatggTaaaagaagcccttcatgagc	10	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	157368742	157368742	T	G	SNP	GPD2	ENST00000310454	human	ensembl	69_37n	1	known	missense	c.410	p.V137G	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_Ca-bd,prints_G3P_DH_FAD-dep,pfscan_EF_HAND_2	-	no_errors	GPD2	HGNC	ENSG00000115159	255	0	0	155	34	17.99	-	-	-	G	157368742	T	G	157368742	3	3	232	1	0	0	0	0	1	0	0	0	6656	1638	57	5	424	5	GPD2	2	157368742	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4817793	157368742	85830631	384	15910										
GPD2	0	genome.wustl.edu	37	chr2	157426677	157426677	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagtgtgactggcaaaaggTggcctattgttggagtacgt	14	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	157426677	157426677	T	G	SNP	GPD2	ENST00000310454	human	ensembl	69_37n	1	known	missense	c.1555	p.W519G	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_Ca-bd,prints_G3P_DH_FAD-dep,pfscan_EF_HAND_2	-	no_errors	GPD2	HGNC	ENSG00000115159	133	1	0.75	140	41	22.53	-	-	-	G	157426677	T	G	157426677	3	3	232	1	0	0	0	0	1	0	0	0	6656	1696	59	5	1597	5	GPD2	2	157426677	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	57935	157426677	85772696	385	15911										
ERMN	0	genome.wustl.edu	37	chr2	158177978	158177978	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggagtcctcacttgcatcAccttcctctttaaattgaga	8	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	158177978	158177978	A	C	SNP	ERMN	ENST00000397283	human	ensembl	69_37n	-1	known	silent	c.699	p.G233	0.000	NULL	superfamily_Moesin	-	no_errors	ERMN	HGNC	ENSG00000136541	401	0	0	242	43	15.09	-	-	-	C	158177978	A	C	158177978	2	2	232	1	0	0	0	0	0	0	0	1	5272	146	6	5		5	ERMN	2	158177978	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	751301	158177978	85021395	386	15912										
ACVR1C	0	genome.wustl.edu	37	chr2	158406837	158406837	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccacacctcaccaaatctAccttttcctactatttcctg	2	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	158406837	158406837	A	C	SNP	ACVR1C	ENST00000243349	human	ensembl	69_37n	-1	known	silent	c.612	p.G204	0.487	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612	141	0	0	164	24	12.77	-	-	-	C	158406837	A	C	158406837	2	2	232	1	0	0	0	0	0	0	0	1	222	378	14	5		5	ACVR1C	2	158406837	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	228859	158406837	84792536	387	15913										
TANC1	0	genome.wustl.edu	37	chr2	159954288	159954288	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgatgtctctgccttcctcAcctttgctgcctcgacagtc	7	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	159954288	159954288	A	C	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.201	p.S67	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	507	5	0.97	366	114	23.7	-	-	-	C	159954288	A	C	159954288	2	2	232	1	0	0	0	0	0	0	0	1	15636	146	6	5		5	TANC1	2	159954288	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1547451	159954288	83245085	388	15914										
TANC1	0	genome.wustl.edu	37	chr2	160031465	160031465	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggttctgcttccccctaggTggtggcctaccactactgcc	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160031465	160031465	T	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.1505	p.V502G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	227	2	0.87	229	37	13.91	-	-	-	G	160031465	T	G	160031465	3	3	232	1	0	0	0	0	1	0	0	0	15636	1710	59	5	1543	5	TANC1	2	160031465	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	77177	160031465	83167908	389	15915										
TANC1	0	genome.wustl.edu	37	chr2	160035347	160035347	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagagtgccagctacaaggTggtgcccgtgtctctctctg	12	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160035347	160035347	T	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.2183	p.V728G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	186	1	0.53	144	22	13.25	-	-	-	G	160035347	T	G	160035347	3	3	232	1	0	0	0	0	1	0	0	0	15636	1696	59	5	2229	5	TANC1	2	160035347	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3882	160035347	83164026	390	15916										
TANC1	0	genome.wustl.edu	37	chr2	160086359	160086359	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagaatctgtttccccaacTcccaggtcccagccatcctc	6	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160086359	160086359	T	C	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.4422	p.T1474	0.186	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	103	0	0	80	13	13.98	-	-	-	C	160086359	T	C	160086359	2	2	232	1	0	0	0	0	0	0	0	1	15636	1538	54	5		5	TANC1	2	160086359	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51012	160086359	83113014	391	15917										
BAZ2B	0	genome.wustl.edu	37	chr2	160193999	160193999	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcaccactaacggatggTgcaggagcagggacagtaac	12	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160193999	160193999	T	G	SNP	BAZ2B	ENST00000426648	human	ensembl	69_37n	-1	putative	silent	c.393	p.A131	1.000	NULL	NULL	-	no_start_codon:no_stop_codon	BAZ2B	HGNC	ENSG00000123636	204	2	0.97	139	33	19.08	-	-	-	G	160193999	T	G	160193999	2	3	232	1	0	0	0	0	0	0	0	1	1336	1711	59	5		5	BAZ2B	2	160193999	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	107640	160193999	83005374	392	15918										
BAZ2B	0	genome.wustl.edu	37	chr2	160205738	160205738	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaatattagaagtaaccacAccagtgggccatccacaaaa	8	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160205738	160205738	A	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.4917	p.G1639	0.982	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	231	1	0.43	112	30	20.98	-	-	-	C	160205738	A	C	160205738	2	2	232	1	0	0	0	0	0	0	0	1	1336	146	6	5		5	BAZ2B	2	160205738	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11739	160205738	82993635	393	15919			1	31		5	4	647	N	T_A	3.756098e-05
BAZ2B	0	genome.wustl.edu	37	chr2	160206228	160206228	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagtactaacctgaagaggTgataaagcaaatggatttaa	10	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160206228	160206228	T	G	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.4854	p.S1618	0.997	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	160	0	0	82	20	19.61	-	-	-	G	160206228	T	G	160206228	2	3	232	1	0	0	0	0	0	0	0	1	1336	1683	59	5		5	BAZ2B	2	160206228	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	490	160206228	82993145	394	15920			1	31		5	4	647	N	T_A	3.756098e-05
BAZ2B	0	genome.wustl.edu	37	chr2	160206294	160206294	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagaggagctggggtaggTgaaggtgacttagatggtgg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160206294	160206294	T	G	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.4788	p.S1596	0.845	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	200	1	0.5	107	28	20.74	-	-	-	G	160206294	T	G	160206294	2	3	232	1	0	0	0	0	0	0	0	1	1336	1683	59	5		5	BAZ2B	2	160206294	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	66	160206294	82993079	395	15921	169	2	1	31		5	4	647	N	T_A	3.756098e-05
BAZ2B	0	genome.wustl.edu	37	chr2	160206300	160206300	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagctggggtaggtgaaggTgacttagatggtggctgaga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160206300	160206300	T	G	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.4782	p.S1594	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	198	1	0.5	99	35	26.12	-	-	-	G	160206300	T	G	160206300	2	3	232	1	0	0	0	0	0	0	0	1	1336	1683	59	5		5	BAZ2B	2	160206300	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6	160206300	82993073	396	15922	169	2	1	31		5	4	647	N	T_A	3.756098e-05
BAZ2B	0	genome.wustl.edu	37	chr2	160206384	160206384	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgaagtgtcatcacagggTgttcgtggcaaaagactaaa	12	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160206384	160206384	T	G	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.4698	p.T1566	0.877	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	307	2	0.65	142	23	13.94	-	-	-	G	160206384	T	G	160206384	2	3	232	1	0	0	0	0	0	0	0	1	1336	1683	59	5		5	BAZ2B	2	160206384	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	84	160206384	82992989	397	15923			1	31		5	4	647	N	T_A	3.756098e-05
MARCH7	0	genome.wustl.edu	37	chr2	160605208	160605208	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatcagattcggctcaaggTggaagaaatacaggaatatc	10	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160605208	160605208	T	G	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	silent	c.1407	p.G469	0.993	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	192	1	0.52	176	23	11.5	-	-	-	G	160605208	T	G	160605208	2	3	232	1	0	0	0	0	0	0	0	1	9377	1683	59	5		5	MARCH7	2	160605208	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	398824	160605208	82594165	398	15924										
PLA2R1	0	genome.wustl.edu	37	chr2	160901383	160901383	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactgtgttgtcatgcgccAcctggacagagtactgcagc	11	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	160901383	160901383	A	C	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.395	p.V132G	0.904	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	213	1	0.47	191	25	11.57	-	-	-	C	160901383	A	C	160901383	3	2	232	1	0	0	0	0	1	0	0	0	12084	159	6	5	4120	5	PLA2R1	2	160901383	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	296175	160901383	82297990	399	15925										
RBMS1	0	genome.wustl.edu	37	chr2	161141319	161141319	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaggagatgcaatatagggTgtaatagaagtttgagtgat	13	2	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	161141319	161141319	T	G	SNP	RBMS1	ENST00000392753	human	ensembl	69_37n	-1	known	silent	c.858	p.T286	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250	146	0	0	83	18	17.82	-	-	-	G	161141319	T	G	161141319	2	3	232	1	0	0	0	0	0	0	0	1	13231	1683	59	5		5	RBMS1	2	161141319	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	239936	161141319	82058054	400	15926										
FAP	0	genome.wustl.edu	37	chr2	163044750	163044750	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgcatagaggagtttgtcAccttggaaagctgttcctcg	11	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	163044750	163044750	A	C	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	silent	c.1743	p.G581	0.999	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	244	1	0.41	134	26	16.15	-	-	-	C	163044750	A	C	163044750	2	2	232	1	0	0	0	0	0	0	0	1	5719	146	6	5		5	FAP	2	163044750	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1903431	163044750	80154623	401	15927										
KCNH7	0	genome.wustl.edu	37	chr2	163256808	163256808	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgagggtgtctcctggaggTgcatgggtggttttgaactt	16	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	163256808	163256808	T	G	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	silent	c.2298	p.A766	0.987	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	266	0	0	146	33	18.44	-	-	-	G	163256808	T	G	163256808	2	3	232	1	0	0	0	0	0	0	0	1	8091	1683	59	5		5	KCNH7	2	163256808	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	212058	163256808	79942565	402	15928										
GRB14	0	genome.wustl.edu	37	chr2	165349619	165349619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattgagttgatagaactccAccagctgtattagatctgta	8	7	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	165349619	165349619	A	C	SNP	GRB14	ENST00000263915	human	ensembl	69_37n	-1	known	missense	c.1550	p.V517G	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	122	1	0.81	72	16	18.18	-	-	-	C	165349619	A	C	165349619	3	2	232	1	0	0	0	0	1	0	0	0	6808	159	6	5	76	5	GRB14	2	165349619	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2092811	165349619	77849754	403	15929										
GRB14	0	genome.wustl.edu	37	chr2	165353599	165353599	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaccatggctgggaccggTggatagctaaagaaatagga	14	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	165353599	165353599	T	G	SNP	GRB14	ENST00000263915	human	ensembl	69_37n	-1	known	missense	c.1301	p.H434P	0.999	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	128	0	0	58	15	20.55	-	-	-	G	165353599	T	G	165353599	3	3	232	1	0	0	0	0	1	0	0	0	6808	1696	59	5	333	5	GRB14	2	165353599	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3980	165353599	77845774	404	15930										
SCN3A	0	genome.wustl.edu	37	chr2	165947468	165947468	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttaactgagctgccagggTgaattgtgtcagggtcacag	13	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	165947468	165947468	T	G	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.5195	p.H1732P	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	422	0	0	340	49	12.56	-	-	-	G	165947468	T	G	165947468	3	3	232	1	0	0	0	0	1	0	0	0	14006	1696	59	5	811	5	SCN3A	2	165947468	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	593869	165947468	77251905	405	15931										
SCN2A	0	genome.wustl.edu	37	chr2	166245526	166245526	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgaccctgacaaagatcAccctggaagctcagttaaag	9	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	166245526	166245526	A	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.5210	p.H1737P	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	773	3	0.38	396	45	10.2	-	-	-	C	166245526	A	C	166245526	3	2	232	1	0	0	0	0	1	0	0	0	14004	159	6	5	5408	5	SCN2A	2	166245526	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	298058	166245526	76953847	406	15932										
SCN9A	0	genome.wustl.edu	37	chr2	167141110	167141110	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgttcaccggcagcattggTggggacctactggcttggct	14	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	167141110	167141110	T	G	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.1830	p.P610	0.109	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	131	0	0	95	24	20.17	-	-	-	G	167141110	T	G	167141110	2	3	232	1	0	0	0	0	0	0	0	1	14013	1683	59	5		5	SCN9A	2	167141110	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	895584	167141110	76058263	407	15933										
SCN7A	0	genome.wustl.edu	37	chr2	167262332	167262332	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaagggttggctaacaaaaAccctgattctatttctgaaa	7	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	167262332	167262332	A	C	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.4807	p.F1603V	0.914	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	408	0	0	286	32	10.06	-	-	-	C	167262332	A	C	167262332	3	2	232	1	0	0	0	0	1	0	0	0	14011	43	2	5	245	5	SCN7A	2	167262332	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	121222	167262332	75937041	408	15934										
XIRP2	0	genome.wustl.edu	37	chr2	168102873	168102873	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagaagagatagtgaaaggTgatgtacaacaagcaataaa	10	3	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	168102873	168102873	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.4971	p.G1657	0.969	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	267	1	0.37	180	25	12.14	-	-	-	G	168102873	T	G	168102873	2	3	232	1	0	0	0	0	0	0	0	1	17527	1683	59	5		5	XIRP2	2	168102873	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	840541	168102873	75096500	409	15935										
XIRP2	0	genome.wustl.edu	37	chr2	168104946	168104946	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggcctccctcttcctccAcctccagtagatgagaaatc	6	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	168104946	168104946	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.7044	p.P2348	0.998	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	665	2	0.3	537	77	12.52	-	-	-	C	168104946	A	C	168104946	2	2	232	1	0	0	0	0	0	0	0	1	17527	146	6	5		5	XIRP2	2	168104946	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2073	168104946	75094427	410	15936										
B3GALT1	0	genome.wustl.edu	37	chr2	168725668	168725668	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctccaaaccattcagccAcctaacagttgccaggaaaa	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	168725668	168725668	A	C	SNP	B3GALT1	ENST00000305861	human	ensembl	69_37n	1	known	missense	c.119	p.H40P	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT1	HGNC	ENSG00000172318	212	0	0	115	21	15.44	-	-	-	C	168725668	A	C	168725668	3	2	232	1	0	0	0	0	1	0	0	0	1251	159	6	5	121	5	B3GALT1	2	168725668	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	620722	168725668	74473705	411	15937										
B3GALT1	0	genome.wustl.edu	37	chr2	168725694	168725694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagttgccaggaaaaacttcAcctttggcaacataagaact	7	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	168725694	168725694	A	C	SNP	B3GALT1	ENST00000305861	human	ensembl	69_37n	1	known	missense	c.145	p.T49P	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT1	HGNC	ENSG00000172318	241	1	0.41	121	31	20.39	-	-	-	C	168725694	A	C	168725694	3	2	232	1	0	0	0	0	1	0	0	0	1251	159	6	5	147	5	B3GALT1	2	168725694	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26	168725694	74473679	412	15938										
STK39	0	genome.wustl.edu	37	chr2	168986078	168986078	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctctttgggctatgtctggTgttcttgtaagcagcttctc	11	9	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	168986078	168986078	T	G	SNP	STK39	ENST00000355999	human	ensembl	69_37n	-1	known	silent	c.1062	p.T354	0.998	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648	315	0	0	296	36	10.84	-	-	-	G	168986078	T	G	168986078	2	3	232	1	0	0	0	0	0	0	0	1	15396	1683	59	5		5	STK39	2	168986078	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	260384	168986078	74213295	413	15939										
LRP2	0	genome.wustl.edu	37	chr2	169989105	169989105	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagttccatcagcagctggTgaagttgggtttgtctctgg	14	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	169989105	169989105	T	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.13707	p.S4569	0.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	392	2	0.51	299	50	14.33	-	-	-	G	169989105	T	G	169989105	2	3	232	1	0	0	0	0	0	0	0	1	9022	1683	59	5		5	LRP2	2	169989105	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1003027	169989105	73210268	414	15940										
GORASP2	0	genome.wustl.edu	37	chr2	171818231	171818231	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtccctcacttctgtgccAccaatgaatccagctactac	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	171818231	171818231	A	C	SNP	GORASP2	ENST00000452526	human	ensembl	69_37n	1	known	silent	c.918	p.P306	0.996	pfam_GRASP55/65_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806	219	1	0.45	232	26	10.04	-	-	-	C	171818231	A	C	171818231	2	2	232	1	0	0	0	0	0	0	0	1	6625	146	6	5		5	GORASP2	2	171818231	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1829126	171818231	71381142	415	15941										
ZAK	0	genome.wustl.edu	37	chr2	174055653	174055653	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgatggagtattgaaggTaggactatttcttttactta	10	4	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	174055653	174055653	T	G	SNP	ZAK	ENST00000375213	human	ensembl	69_37n	1	known	splice_site	c.444+2	e5+2	1.000	-	-	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	198	0	0	145	21	12.65	-	-	-	G	174055653	T	G	174055653	5	3	232	1	0	0	0	0	0	0	1	0	17609	1652	57	5	464	5	ZAK	2	174055653	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2237422	174055653	69143720	416	15942										
NFE2L2	0	genome.wustl.edu	37	chr2	178096428	178096428	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatggcttaaagtagcaggTgagggcatgctgttgctgat	15	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	178096428	178096428	T	G	SNP	NFE2L2	ENST00000397062	human	ensembl	69_37n	-1	known	silent	c.903	p.S301	0.383	superfamily_Sepin_dom	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,superfamily_Sepin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	167	0	0	130	20	13.25	-	-	-	G	178096428	T	G	178096428	2	3	232	1	0	0	0	0	0	0	0	1	10440	1683	59	5		5	NFE2L2	2	178096428	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4040775	178096428	65102945	417	15943										
OSBPL6	0	genome.wustl.edu	37	chr2	179214042	179214042	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atttcagactccccctagccAcctcactgaccctctggaaa	5	17	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179214042	179214042	A	C	SNP	OSBPL6	ENST00000315022	human	ensembl	69_37n	1	known	missense	c.1091	p.H364P	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156	342	0	0	283	35	10.97	-	-	-	C	179214042	A	C	179214042	3	2	232	1	0	0	0	0	1	0	0	0	11354	159	6	5	1239	5	OSBPL6	2	179214042	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1117614	179214042	63985331	418	15944										
PLEKHA3	0	genome.wustl.edu	37	chr2	179360369	179360369	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccttagtttctcctgtgtcAccttctcctgttcaaatggt	6	13	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179360369	179360369	A	C	SNP	PLEKHA3	ENST00000234453	human	ensembl	69_37n	1	known	silent	c.597	p.S199	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA3	HGNC	ENSG00000116095	274	0	0	202	25	11.01	-	-	-	C	179360369	A	C	179360369	2	2	232	1	0	0	0	0	0	0	0	1	12131	146	6	5		5	PLEKHA3	2	179360369	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	146327	179360369	63839004	419	15945										
TTN	0	genome.wustl.edu	37	chr2	179411885	179411885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggcactttgttttctttcAcccaaagaattgtattacgt	6	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179411885	179411885	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.86663	p.V28888G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	359	3	0.83	223	31	12.2	-	-	-	C	179411885	A	C	179411885	3	2	232	1	0	0	0	0	1	0	0	0	16832	159	6	5	13704	5	TTN	2	179411885	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	51516	179411885	63787488	420	15946										
TTN	0	genome.wustl.edu	37	chr2	179431755	179431755	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gattccaaaggctctccaacAccatatttgttgacagccat	6	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179431755	179431755	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.71400	p.G23800	0.855	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	226	0	0	163	27	14.14	-	-	-	C	179431755	A	C	179431755	2	2	232	1	0	0	0	0	0	0	0	1	16832	146	6	5		5	TTN	2	179431755	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19870	179431755	63767618	421	15947										
TTN	0	genome.wustl.edu	37	chr2	179440254	179440254	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgatgttaaggctgtctggTggagatggtgcttcagaggc	16	5	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179440254	179440254	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.62901	p.P20967	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	174	1	0.57	173	22	11.28	-	-	-	G	179440254	T	G	179440254	2	3	232	1	0	0	0	0	0	0	0	1	16832	1683	59	5		5	TTN	2	179440254	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8499	179440254	63759119	422	15948										
TTN	0	genome.wustl.edu	37	chr2	179466035	179466035	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgaatggtttccacaggTgggccaataccaaaacggtt	10	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179466035	179466035	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.47985	p.P15995	0.246	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	138	0	0	114	18	13.53	-	-	-	G	179466035	T	G	179466035	2	3	232	1	0	0	0	0	0	0	0	1	16832	1683	59	5		5	TTN	2	179466035	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	25781	179466035	63733338	423	15949										
TTN	0	genome.wustl.edu	37	chr2	179474570	179474570	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgttcattgcatctcttccAcctttcttcacccttagcaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179474570	179474570	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.43876	p.W14626G	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	635	2	0.31	460	75	14.02	-	-	-	C	179474570	A	C	179474570	3	2	232	1	0	0	0	0	1	0	0	0	16832	159	6	5	56477	5	TTN	2	179474570	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8535	179474570	63724803	424	15950	170	2								
TTN	0	genome.wustl.edu	37	chr2	179474580	179474580	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctcttccacctttcttcAcccttagcaatcttctctat							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179474580	179474580	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.43866	p.G14622	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	610	1	0.16	431	70	13.97	-	-	-	C	179474580	A	C	179474580	2	2	232	1	0	0	0	0	0	0	0	1	16832	146	6	5		5	TTN	2	179474580	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10	179474580	63724793	425	15951	170	2								
TTN	0	genome.wustl.edu	37	chr2	179489290	179489290	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtataacaagttttctgAccctgccatcagcaacaatt	5	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179489290	179489290	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.37013	p.V12338G	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	124	0	0	82	21	20.39	-	-	-	C	179489290	A	C	179489290	3	2	232	1	0	0	0	0	1	0	0	0	16832	275	10	5	63460	5	TTN	2	179489290	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14710	179489290	63710083	426	15952										
TTN	0	genome.wustl.edu	37	chr2	179489359	179489359	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccatttttgaaccatttcAccttagcattttctctggag	5	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179489359	179489359	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.36944	p.V12315G	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	111	0	0	76	16	17.39	-	-	-	C	179489359	A	C	179489359	3	2	232	1	0	0	0	0	1	0	0	0	16832	159	6	5	63529	5	TTN	2	179489359	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69	179489359	63710014	427	15953										
TTN	0	genome.wustl.edu	37	chr2	179526496	179526496	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgacaaatacctttaacaggTgggacttcaggctttttagg	10	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179526496	179526496	T	G	SNP	TTN	ENST00000589042	human	ensembl	69_37n	-1	putative	silent	c.37275	p.P12425	0.049	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	105	0	0	124	19	13.19	-	-	-	G	179526496	T	G	179526496	2	3	232	1	0	0	0	0	0	0	0	1	16832	1711	59	5		5	TTN	2	179526496	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	37137	179526496	63672877	428	15954										
TTN	0	genome.wustl.edu	37	chr2	179528556	179528556	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcaactacctttaacaggTgggacttcaggctctttagg	11	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179528556	179528556	T	G	SNP	TTN	ENST00000425332	human	ensembl	69_37n	-1	novel	missense	c.629	p.H210P	0.654	NULL	pfam_PPAK_motif	-	no_start_codon:pseudogene:no_stop_codon	TTN	HGNC	ENSG00000155657	579	1	0.17	421	53	11.13	-	-	-	G	179528556	T	G	179528556	3	3	232	1	0	0	0	0	1	0	0	0	16832	1711	59	5		5	TTN	2	179528556	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2060	179528556	63670817	429	15955										
TTN	0	genome.wustl.edu	37	chr2	179575595	179575595	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaagtcagcactttctcccAccacagcatccacaggggca	7	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179575595	179575595	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.24497	p.V8166G	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	121	1	0.82	73	15	17.05	-	-	-	C	179575595	A	C	179575595	3	2	232	1	0	0	0	0	1	0	0	0	16832	159	6	5	76360	5	TTN	2	179575595	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47039	179575595	63623778	430	15956										
TTN	0	genome.wustl.edu	37	chr2	179594285	179594285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcagctctctgataaaggTggggggttctaaagattcaa	11	7	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179594285	179594285	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.14866	p.T4956P	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	217	2	0.91	158	23	12.64	-	-	-	G	179594285	T	G	179594285	3	3	232	1	0	0	0	0	1	0	0	0	16832	1696	59	5	86127	5	TTN	2	179594285	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	18690	179594285	63605088	431	15957										
TTN	0	genome.wustl.edu	37	chr2	179604686	179604686	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtttacagcctcgacctccAccttttcaatatttcttagc	4	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179604686	179604686	A	C	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.12761	p.V4254G	0.998	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	210	1	0.47	119	41	25.31	-	-	-	C	179604686	A	C	179604686	3	2	232	1	0	0	0	0	1	0	0	0	16832	159	6	5	91515	5	TTN	2	179604686	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10401	179604686	63594687	432	15958										
TTN	0	genome.wustl.edu	37	chr2	179612157	179612157	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatattcaacagatgatggTggggtataaaactgatctaa	9	4	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179612157	179612157	T	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	silent	c.14970	p.P4990	0.994	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	248	0	0	153	21	11.93	-	-	-	G	179612157	T	G	179612157	2	3	232	1	0	0	0	0	0	0	0	1	16832	1683	59	5		5	TTN	2	179612157	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7471	179612157	63587216	433	15959										
TTN	0	genome.wustl.edu	37	chr2	179640834	179640834	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcactttatgctctatcacAccttcaggattttccgcggt	6	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179640834	179640834	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.5757	p.G1919	0.978	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	335	1	0.3	266	36	11.92	-	-	-	C	179640834	A	C	179640834	2	2	232	1	0	0	0	0	0	0	0	1	16832	146	6	5		5	TTN	2	179640834	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28677	179640834	63558539	434	15960			2	32	19434450	4	4	280	A		3.087564e-06
TTN	0	genome.wustl.edu	37	chr2	179641000	179641000	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggctgagggtagcctgttAccctgcagcggaaccttgca	14	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179641000	179641000	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.5591	p.V1864G	0.998	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	301	1	0.33	206	31	13.08	-	-	-	C	179641000	A	C	179641000	3	2	232	1	0	0	0	0	1	0	0	0	16832	391	14	5	105737	5	TTN	2	179641000	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	166	179641000	63558373	435	15961			2	32	19434450	4	4	280	A		3.087564e-06
TTN	0	genome.wustl.edu	37	chr2	179641101	179641101	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctttctgatctgttgttacAcctgtaagtgcaccttcatg	7	10	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179641101	179641101	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.5490	p.G1830	0.985	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	249	1	0.4	181	25	12.08	-	-	-	C	179641101	A	C	179641101	2	2	232	1	0	0	0	0	0	0	0	1	16832	146	6	5		5	TTN	2	179641101	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	101	179641101	63558272	436	15962			2	32	19434450	4	4	280	A		3.087564e-06
TTN	0	genome.wustl.edu	37	chr2	179641113	179641113	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgttacacctgtaagtgcAccttcatgagccattctctc	7	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	179641113	179641113	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.5478	p.G1826	0.993	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	251	1	0.4	191	28	12.79	-	-	-	C	179641113	A	C	179641113	2	2	232	1	0	0	0	0	0	0	0	1	16832	146	6	5		5	TTN	2	179641113	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12	179641113	63558260	437	15963			2	32	19434450	4	4	280	A		3.087564e-06
ITGA4	0	genome.wustl.edu	37	chr2	182374434	182374434	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagattgaagctgcttaccAccttggtcctcatgtcatca	7	12	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	182374434	182374434	A	C	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.1745	p.H582P	1.000	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	212	1	0.47	154	22	12.5	-	-	-	C	182374434	A	C	182374434	3	2	232	1	0	0	0	0	1	0	0	0	7932	159	6	5	1807	5	ITGA4	2	182374434	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2733321	182374434	60824939	438	15964										
SSFA2	0	genome.wustl.edu	37	chr2	182780671	182780671	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagagaccagatgcagcccAccttccttcacctataagta	6	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	182780671	182780671	A	C	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	silent	c.2304	p.P768	0.992	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	273	1	0.36	302	42	12.17	-	-	-	C	182780671	A	C	182780671	2	2	232	1	0	0	0	0	0	0	0	1	15274	146	6	5		5	SSFA2	2	182780671	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	406237	182780671	60418702	439	15965										
ITGAV	0	genome.wustl.edu	37	chr2	187511546	187511546	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggctgctcgaagcatgccAccaagctttggctattcaat	10	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	187511546	187511546	A	C	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	silent	c.1293	p.P431	0.529	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	162	0	0	89	18	16.82	-	-	-	C	187511546	A	C	187511546	2	2	232	1	0	0	0	0	0	0	0	1	7942	146	6	5		5	ITGAV	2	187511546	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4730875	187511546	55687827	440	15966										
COL5A2	0	genome.wustl.edu	37	chr2	189927994	189927994	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggccatcttcccctggcgcAccctatagaattgacaggag	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	189927994	189927994	A	C	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	silent	c.1773	p.G591	0.873	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	105	0	0	105	16	13.01	-	-	-	C	189927994	A	C	189927994	2	2	232	1	0	0	0	0	0	0	0	1	3727	146	6	5		5	COL5A2	2	189927994	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2416448	189927994	53271379	441	15967										
SLC40A1	0	genome.wustl.edu	37	chr2	190439955	190439955	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaccagaacagaccctgccAccaccagcccgtagactgct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	190439955	190439955	A	C	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.203	p.V68G	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	288	2	0.68	183	44	19.38	-	-	-	C	190439955	A	C	190439955	3	2	232	1	0	0	0	0	1	0	0	0	14717	159	6	5	1536	5	SLC40A1	2	190439955	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	511961	190439955	52759418	442	15968	171	2								
SLC40A1	0	genome.wustl.edu	37	chr2	190439958	190439958	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagaacagaccctgccaccAccagcccgtagactgctgtc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	190439958	190439958	A	C	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.200	p.V67G	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	293	1	0.34	189	38	16.59	-	-	-	C	190439958	A	C	190439958	3	2	232	1	0	0	0	0	1	0	0	0	14717	159	6	5	1539	5	SLC40A1	2	190439958	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	190439958	52759415	443	15969	171	2								
ASNSD1	0	genome.wustl.edu	37	chr2	190531042	190531042	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttgaggggtgttttgactAcccagcctgtggaagatgaa	13	7	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	190531042	190531042	A	C	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.184	p.T62P	0.997	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	203	1	0.49	145	26	15.2	-	-	-	C	190531042	A	C	190531042	3	2	232	1	0	0	0	0	1	0	0	0	1053	391	14	5	186	5	ASNSD1	2	190531042	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	91084	190531042	52668331	444	15970										
INPP1	0	genome.wustl.edu	37	chr2	191235676	191235676	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgaaacacacactggaaacAccggctctgaggcagcattc	10	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	191235676	191235676	A	C	SNP	INPP1	ENST00000322522	human	ensembl	69_37n	1	known	missense	c.748	p.T250P	0.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	INPP1	HGNC	ENSG00000151689	346	3	0.86	365	41	10.1	-	-	-	C	191235676	A	C	191235676	3	2	232	1	0	0	0	0	1	0	0	0	7805	159	6	5	766	5	INPP1	2	191235676	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	704634	191235676	51963697	445	15971										
STAT1	0	genome.wustl.edu	37	chr2	191844522	191844522	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattccagagagggagcaggTgttttttaatgagttctagg	13	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	191844522	191844522	T	G	SNP	STAT1	ENST00000361099	human	ensembl	69_37n	-1	known	missense	c.1703	p.H568P	1.000	superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	100	1	0.98	59	20	25.32	-	-	-	G	191844522	T	G	191844522	3	3	232	1	0	0	0	0	1	0	0	0	15355	1696	59	5	577	5	STAT1	2	191844522	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	608846	191844522	51354851	446	15972										
SLC39A10	0	genome.wustl.edu	37	chr2	196578278	196578278	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaactcaagcctcttgccgGtagacagcaattctgactca	7	13	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	196578278	196578278	G	T	SNP	SLC39A10	ENST00000359634	human	ensembl	69_37n	1	known	splice_site	c.1696+1	e5+1	1.000	-	-	-	no_errors	SLC39A10	HGNC	ENSG00000196950	127	0	0	70	17	19.54	-	-	-	T	196578278	G	T	196578278	5	4	232	1	0	0	0	0	0	0	1	0	14702	1275	44	4	1715	4	SLC39A10	2	196578278	Splice_Site	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	4733756	196578278	46621095	447	15973										
DNAH7	0	genome.wustl.edu	37	chr2	196720640	196720640	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgcctgcttctttctaagAccatccatggcaattttaag	7	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	196720640	196720640	A	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.8490	p.G2830	0.953	superfamily_Signal_recog_particle_SRP9/14	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	585	2	0.34	340	44	11.46	-	-	-	C	196720640	A	C	196720640	2	2	232	1	0	0	0	0	0	0	0	1	4641	262	10	5		5	DNAH7	2	196720640	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	142362	196720640	46478733	448	15974										
DNAH7	0	genome.wustl.edu	37	chr2	196720662	196720662	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catccatggcaattttaagcTccccttcagctgcagccagt	7	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	196720662	196720662	T	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.8468	p.E2823G	0.998	superfamily_Signal_recog_particle_SRP9/14	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	603	2	0.33	347	39	10.08	-	-	-	C	196720662	T	C	196720662	3	2	232	1	0	0	0	0	1	0	0	0	4641	1551	54	5	3690	5	DNAH7	2	196720662	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	22	196720662	46478711	449	15975										
DNAH7	0	genome.wustl.edu	37	chr2	196825287	196825287	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctgatggctgcaaagggTaaccaacaatggcagacatg	11	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	196825287	196825287	T	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.2588	p.Y863S	0.165	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	332	2	0.59	196	31	13.66	-	-	-	G	196825287	T	G	196825287	3	3	232	1	0	0	0	0	1	0	0	0	4641	1638	57	5	9678	5	DNAH7	2	196825287	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	104625	196825287	46374086	450	15976										
DNAH7	0	genome.wustl.edu	37	chr2	196825383	196825383	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgctgcttgaaatcttccAcctttgatcttacttttttt	5	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	196825383	196825383	A	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.2492	p.V831G	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	300	2	0.66	182	30	14.08	-	-	-	C	196825383	A	C	196825383	3	2	232	1	0	0	0	0	1	0	0	0	4641	159	6	5	9774	5	DNAH7	2	196825383	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	96	196825383	46373990	451	15977										
HECW2	0	genome.wustl.edu	37	chr2	197085561	197085561	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctctgtttgctgtacaacAcccctctcaatcctccactt	3	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	197085561	197085561	A	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	silent	c.4251	p.G1417	0.033	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	260	2	0.76	177	36	16.9	-	-	-	C	197085561	A	C	197085561	2	2	232	1	0	0	0	0	0	0	0	1	7094	146	6	5		5	HECW2	2	197085561	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	260178	197085561	46113812	452	15978										
HECW2	0	genome.wustl.edu	37	chr2	197194348	197194348	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatgcaggtttcctgaagcAcctccctccatgccttctgc	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	197194348	197194348	A	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	silent	c.522	p.G174	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	219	0	0	145	27	15.7	-	-	-	C	197194348	A	C	197194348	2	2	232	1	0	0	0	0	0	0	0	1	7094	146	6	5		5	HECW2	2	197194348	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	108787	197194348	46005025	453	15979										
GTF3C3	0	genome.wustl.edu	37	chr2	197641299	197641299	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagtggggccagatcaaccAccttgccatagctttcagca	11	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	197641299	197641299	A	C	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	missense	c.1445	p.V482G	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041	307	2	0.64	178	53	22.84	-	-	-	C	197641299	A	C	197641299	3	2	232	1	0	0	0	0	1	0	0	0	6925	159	6	5	1247	5	GTF3C3	2	197641299	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	446951	197641299	45558074	454	15980										
PLCL1	0	genome.wustl.edu	37	chr2	198953724	198953724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgaaagacagctttccttAcctggagcctctgggtgcaa	11	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	198953724	198953724	A	C	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.2858	p.Y953S	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	598	0	0	426	54	11.18	-	-	-	C	198953724	A	C	198953724	3	2	232	1	0	0	0	0	1	0	0	0	12113	391	14	5	2868	5	PLCL1	2	198953724	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1312425	198953724	44245649	455	15981										
ALS2CR12	0	genome.wustl.edu	37	chr2	202208912	202208912	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaatttctgggcagactggTggtctctgttcatttgttca	10	9	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	202208912	202208912	T	G	SNP	ALS2CR12	ENST00000286190	human	ensembl	69_37n	-1	known	missense	c.443	p.H148P	0.982	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	ALS2CR12	HGNC	ENSG00000155749	231	1	0.43	161	26	13.83	-	-	-	G	202208912	T	G	202208912	3	3	232	1	0	0	0	0	1	0	0	0	553	1696	59	5	934	5	ALS2CR12	2	202208912	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3255188	202208912	40990461	456	15982										
TRAK2	0	genome.wustl.edu	37	chr2	202265799	202265799	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagttttggtcatctgctccAccctgtctgtgcctagaact	8	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	202265799	202265799	A	C	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.305	p.V102G	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	184	0	0	105	20	15.87	-	-	-	C	202265799	A	C	202265799	3	2	232	1	0	0	0	0	1	0	0	0	16546	159	6	5	2491	5	TRAK2	2	202265799	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	56887	202265799	40933574	457	15983										
ALS2	0	genome.wustl.edu	37	chr2	202611349	202611349	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgattctctggaaggttgtcAccttctgtagggtcctgtcg	12	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	202611349	202611349	A	C	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	silent	c.1938	p.G646	0.994	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	299	0	0	234	30	11.32	-	-	-	C	202611349	A	C	202611349	2	2	232	1	0	0	0	0	0	0	0	1	550	146	6	5		5	ALS2	2	202611349	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	345550	202611349	40588024	458	15984										
ALS2CR8	0	genome.wustl.edu	37	chr2	203817332	203817332	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggtacttcgtgtaattccAcctacccagacaggaatggc	9	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	203817332	203817332	A	C	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	silent	c.357	p.P119	0.999	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	248	0	0	212	42	16.54	-	-	-	C	203817332	A	C	203817332	2	2	232	1	0	0	0	0	0	0	0	1	555	146	6	5		5	ALS2CR8	2	203817332	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1205983	203817332	39382041	459	15985										
CD28	0	genome.wustl.edu	37	chr2	204599576	204599576	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccccgccgccccgggcccAcccgcaagcattaccagccc	8	24	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	204599576	204599576	A	C	SNP	CD28	ENST00000324106	human	ensembl	69_37n	1	known	missense	c.604	p.T202P	0.355	prints_CD28	pfam_Ig_V-set,smart_Ig_V-set_subgr,prints_CD28	-	no_errors	CD28	HGNC	ENSG00000178562	135	1	0.74	131	19	12.67	-	-	-	C	204599576	A	C	204599576	3	2	232	1	0	0	0	0	1	0	0	0	3022	159	6	5	618	5	CD28	2	204599576	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	782244	204599576	38599797	460	15986										
PARD3B	0	genome.wustl.edu	37	chr2	206480219	206480219	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagactatctgccagcagcAcctcgggggctctacaagga	12	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	206480219	206480219	A	C	SNP	PARD3B	ENST00000406610	human	ensembl	69_37n	1	known	silent	c.3300	p.A1100	0.775	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	184	0	0	148	23	13.45	-	-	-	C	206480219	A	C	206480219	2	2	232	1	0	0	0	0	0	0	0	1	11517	146	6	5		5	PARD3B	2	206480219	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1880643	206480219	36719154	461	15987										
PARD3B	0	genome.wustl.edu	37	chr2	206480320	206480320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgccccacagagctcagggTggcagatctccggtatcctc	11	16	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	206480320	206480320	T	G	SNP	PARD3B	ENST00000406610	human	ensembl	69_37n	1	known	missense	c.3401	p.V1134G	0.053	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	182	1	0.55	129	24	15.48	-	-	-	G	206480320	T	G	206480320	3	3	232	1	0	0	0	0	1	0	0	0	11517	1696	59	5	3491	5	PARD3B	2	206480320	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	101	206480320	36719053	462	15988										
NDUFS1	0	genome.wustl.edu	37	chr2	207003270	207003270	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttgggggagtctcccaggTggtcatatgtgtaagtgagg	16	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	207003270	207003270	T	G	SNP	NDUFS1	ENST00000455934	human	ensembl	69_37n	-1	known	missense	c.1373	p.H458P	1.000	pfam_Mopterin_OxRdtase,tigrfam_NADH_UbQ_OxRdtase_Gsu	pfam_Mopterin_OxRdtase,pfam_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfam_NuoG_C,pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,smart_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	-	no_errors	NDUFS1	HGNC	ENSG00000023228	132	1	0.75	94	17	15.32	-	-	-	G	207003270	T	G	207003270	3	3	232	1	0	0	0	0	1	0	0	0	10363	1696	59	5	880	5	NDUFS1	2	207003270	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	522950	207003270	36196103	463	15989										
MAP2	0	genome.wustl.edu	37	chr2	210560850	210560850	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccctagagcagcctgaggTggaaaggagaccatctcctc	12	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	210560850	210560850	T	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.3956	p.V1319G	0.950	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	192	1	0.51	143	21	12.8	-	-	-	G	210560850	T	G	210560850	3	3	232	1	0	0	0	0	1	0	0	0	9306	1696	59	5	3970	5	MAP2	2	210560850	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3557580	210560850	32638523	464	15990										
MAP2	0	genome.wustl.edu	37	chr2	210565008	210565008	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttattttcaacagcagcaggTggggaatcagctctggctcc	11	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	210565008	210565008	T	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	silent	c.4530	p.G1510	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	162	0	0	125	21	14.29	-	-	-	G	210565008	T	G	210565008	2	3	232	1	0	0	0	0	0	0	0	1	9306	1683	59	5		5	MAP2	2	210565008	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4158	210565008	32634365	465	15991										
MAP2	0	genome.wustl.edu	37	chr2	210569294	210569294	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagtttattaatacagcccAcctcagcaggctccacagac	6	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	210569294	210569294	A	C	SNP	MAP2	ENST00000199940	human	ensembl	69_37n	1	known	missense	c.637	p.T213P	0.997	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	252	0	0	144	23	13.77	-	-	-	C	210569294	A	C	210569294	3	2	232	1	0	0	0	0	1	0	0	0	9306	159	6	5	4735	5	MAP2	2	210569294	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4286	210569294	32630079	466	15992										
ERBB4	0	genome.wustl.edu	37	chr2	212248370	212248370	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtattccggtgtctgtaaggTggaggcggcagcacagtgcc	16	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	212248370	212248370	T	G	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	silent	c.3897	p.P1299	0.188	NULL	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	105	0	0	64	12	15.79	-	-	-	G	212248370	T	G	212248370	2	3	232	1	0	0	0	0	0	0	0	1	5246	1683	59	5		5	ERBB4	2	212248370	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1679076	212248370	30951003	467	15993										
SPAG16	0	genome.wustl.edu	37	chr2	214794711	214794711	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaattggctacttcaagtggTgacactacagttaaattatg	8	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	214794711	214794711	T	G	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	silent	c.1242	p.G414	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	136	0	0	58	17	22.67	-	-	-	G	214794711	T	G	214794711	2	3	232	1	0	0	0	0	0	0	0	1	15069	1683	59	5		5	SPAG16	2	214794711	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2546341	214794711	28404662	468	15994										
ABCA12	0	genome.wustl.edu	37	chr2	216002878	216002878	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaccggctgcctttttacAcctagccaatttttccagac	5	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	216002878	216002878	A	C	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	silent	c.54	p.G18	0.999	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	342	1	0.29	205	62	23.22	-	-	-	C	216002878	A	C	216002878	2	2	232	1	0	0	0	0	0	0	0	1	30	146	6	5		5	ABCA12	2	216002878	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1208167	216002878	27196495	469	15995										
ABCA12	0	genome.wustl.edu	37	chr2	216002897	216002897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacctagccaatttttccagAccaggatctgaagctgatga	8	11	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	216002897	216002897	A	C	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.35	p.V12G	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	346	0	0	219	32	12.65	-	-	-	C	216002897	A	C	216002897	3	2	232	1	0	0	0	0	1	0	0	0	30	275	10	5	7995	5	ABCA12	2	216002897	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19	216002897	27196476	470	15996										
FN1	0	genome.wustl.edu	37	chr2	216271893	216271893	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttgttgaatgacaacaggTgtactttcttgattttcttc	7	7	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	216271893	216271893	T	G	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	silent	c.2670	p.T890	0.056	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	216	0	0	153	21	12	-	-	-	G	216271893	T	G	216271893	2	3	232	1	0	0	0	0	0	0	0	1	6008	1683	59	5		5	FN1	2	216271893	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	268996	216271893	26927480	471	15997										
XRCC5	0	genome.wustl.edu	37	chr2	217012932	217012932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcctctctctaaaataaagAccctttttcctctgattgaa	3	11	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	217012932	217012932	A	C	SNP	XRCC5	ENST00000392132	human	ensembl	69_37n	1	known	missense	c.1603	p.T535P	0.996	pfam_Ku_C,superfamily_SPOC-like	pfam_Ku_N,pfam_Ku_PK_bind,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,superfamily_SPOC-like,superfamily_Ku_PK_bind,smart_VWF_A,smart_DNA_helicase_ATP-dep_Ku	-	no_errors	XRCC5	HGNC	ENSG00000079246	489	2	0.41	446	89	16.6	-	-	-	C	217012932	A	C	217012932	3	2	232	1	0	0	0	0	1	0	0	0	17553	275	10	5	1657	5	XRCC5	2	217012932	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	741039	217012932	26186441	472	15998										
USP37	0	genome.wustl.edu	37	chr2	219363007	219363007	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttaaactacatattactacAccctaaccccaaggtttctg	4	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	219363007	219363007	A	C	SNP	USP37	ENST00000466523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	USP37	HGNC	ENSG00000135913	37	0	0	32	8	19.51	-	-	-	C	219363007	A	C	219363007	1	2	232	0	1	0	0	0	0	0	0	0	17165	174	6	5		5	USP37	2	219363007	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2350075	219363007	23836366	473	15999										
PLCD4	0	genome.wustl.edu	37	chr2	219500656	219500656	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactatgtggagaacaatggTgagaaactggcagtgctggg	15	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	219500656	219500656	T	G	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	splice_site	c.2032+2	e13+2	1.000	-	-	-	no_errors	PLCD4	HGNC	ENSG00000115556	50	0	0	44	9	16.98	-	-	-	G	219500656	T	G	219500656	5	3	232	1	0	0	0	0	0	0	1	0	12107	1710	59	5	2084	5	PLCD4	2	219500656	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	137649	219500656	23698717	474	16000										
BCS1L	0	genome.wustl.edu	37	chr2	219527707	219527707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgcatcgtgttcatgaccAccaaccacgttgacaggtag	9	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	219527707	219527707	A	C	SNP	BCS1L	ENST00000359273	human	ensembl	69_37n	1	known	missense	c.991	p.T331P	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_BCS1_N,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582	130	0	0	149	20	11.83	-	-	-	C	219527707	A	C	219527707	3	2	232	1	0	0	0	0	1	0	0	0	1393	159	6	5	1013	5	BCS1L	2	219527707	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27051	219527707	23671666	475	16001										
TTLL4	0	genome.wustl.edu	37	chr2	219619068	219619068	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagactttctgcttcctccActttccagtcaatcagtgac	5	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	219619068	219619068	A	C	SNP	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	missense	c.3556	p.T1186P	0.001	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	123	1	0.81	110	18	13.74	-	-	-	C	219619068	A	C	219619068	3	2	232	1	0	0	0	0	1	0	0	0	16826	159	6	5	3626	5	TTLL4	2	219619068	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	91361	219619068	23580305	476	16002										
NHEJ1	0	genome.wustl.edu	37	chr2	220022939	220022939	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgaccacactagtgtccAcctgttcatgccacacctgt	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	220022939	220022939	A	C	SNP	NHEJ1	ENST00000450447	human	ensembl	69_37n	-1	known	splice_site	c.144+2	e1+2	1.000	-	-	-	no_errors	NHEJ1	HGNC	ENSG00000187736	222	1	0.45	147	22	13.02	-	-	-	C	220022939	A	C	220022939	5	2	232	1	0	0	0	0	0	0	1	0	10474	159	6	5	781	5	NHEJ1	2	220022939	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	403871	220022939	23176434	477	16003										
FAM134A	0	genome.wustl.edu	37	chr2	220047075	220047075	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccggcaccctgtcacctccActttgccttgttggaagtga	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	220047075	220047075	A	C	SNP	FAM134A	ENST00000430297	human	ensembl	69_37n	1	known	silent	c.1356	p.P452	1.000	NULL	pfam_Reticulon	-	no_errors	FAM134A	HGNC	ENSG00000144567	133	0	0	121	22	15.38	-	-	-	C	220047075	A	C	220047075	2	2	232	1	0	0	0	0	0	0	0	1	5485	146	6	5		5	FAM134A	2	220047075	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24136	220047075	23152298	478	16004										
PTPRN	0	genome.wustl.edu	37	chr2	220166326	220166326	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacccggatttcttcctgcAcccttgggcagtagctgcag	10	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	220166326	220166326	A	C	SNP	PTPRN	ENST00000295718	human	ensembl	69_37n	-1	known	silent	c.1110	p.G370	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356	100	1	0.98	59	14	19.18	-	-	-	C	220166326	A	C	220166326	2	2	232	1	0	0	0	0	0	0	0	1	12890	146	6	5		5	PTPRN	2	220166326	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	119251	220166326	23033047	479	16005										
INHA	0	genome.wustl.edu	37	chr2	220440174	220440174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcccctacatgtccgcaccAcctcggatggaggttactct	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	220440174	220440174	A	C	SNP	INHA	ENST00000243786	human	ensembl	69_37n	1	known	missense	c.1027	p.T343P	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	138	0	0	86	17	16.5	-	-	-	C	220440174	A	C	220440174	3	2	232	1	0	0	0	0	1	0	0	0	7794	159	6	5	1033	5	INHA	2	220440174	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	273848	220440174	22759199	480	16006										
EPHA4	0	genome.wustl.edu	37	chr2	222294870	222294870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcctcaatggctttaatcAcctatggaagacaacaggat	7	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	222294870	222294870	A	C	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	missense	c.2498	p.V833G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	104	1	0.94	77	21	21.21	-	-	-	C	222294870	A	C	222294870	3	2	232	1	0	0	0	0	1	0	0	0	5206	173	6	5	474	5	EPHA4	2	222294870	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1854696	222294870	20904503	481	16007										
SCG2	0	genome.wustl.edu	37	chr2	224462307	224462307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacagggaaccttttgctcAccggggccagcttgtcagtc	11	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	224462307	224462307	A	C	SNP	SCG2	ENST00000305409	human	ensembl	69_37n	-1	known	missense	c.1694	p.V565G	0.003	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	286	0	0	152	30	16.3	-	-	-	C	224462307	A	C	224462307	3	2	232	1	0	0	0	0	1	0	0	0	13978	159	6	5	163	5	SCG2	2	224462307	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2167437	224462307	18737066	482	16008										
SCG2	0	genome.wustl.edu	37	chr2	224462747	224462747	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagtcccagcacgaccaggTgttttagggtagccactctt	10	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	224462747	224462747	T	G	SNP	SCG2	ENST00000305409	human	ensembl	69_37n	-1	known	silent	c.1254	p.T418	0.000	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	322	1	0.31	163	22	11.76	-	-	-	G	224462747	T	G	224462747	2	3	232	1	0	0	0	0	0	0	0	1	13978	1683	59	5		5	SCG2	2	224462747	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	440	224462747	18736626	483	16009										
COL4A4	0	genome.wustl.edu	37	chr2	227946856	227946856	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcttgatacaaccatgtcAcccttcgcccctttgttgcc	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	227946856	227946856	A	C	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	silent	c.1671	p.G557	0.688	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	369	2	0.54	274	48	14.91	-	-	-	C	227946856	A	C	227946856	2	2	232	1	0	0	0	0	0	0	0	1	3723	146	6	5		5	COL4A4	2	227946856	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3484109	227946856	15252517	484	16010										
SPHKAP	0	genome.wustl.edu	37	chr2	228883176	228883176	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagaggcctggcctcactccAcccttgtcttgttttgaata	8	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	228883176	228883176	A	C	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	silent	c.2394	p.G798	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	148	0	0	156	25	13.81	-	-	-	C	228883176	A	C	228883176	2	2	232	1	0	0	0	0	0	0	0	1	15139	146	6	5		5	SPHKAP	2	228883176	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	936320	228883176	14316197	485	16011										
GIGYF2	0	genome.wustl.edu	37	chr2	233659531	233659531	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcctcttctcatacttccAcctcctgttcccaatcctag	2	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	233659531	233659531	A	C	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	silent	c.1422	p.P474	0.981	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	741	4	0.53	647	126	16.24	-	-	-	C	233659531	A	C	233659531	2	2	232	1	0	0	0	0	0	0	0	1	6430	146	6	5		5	GIGYF2	2	233659531	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4776355	233659531	9539842	486	16012										
USP40	0	genome.wustl.edu	37	chr2	234431959	234431959	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcactgttgatgaagatgacAcctgctgggattgctaaggc	13	8	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	234431959	234431959	A	C	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	silent	c.2091	p.G697	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC	ENSG00000085982	397	1	0.25	247	32	11.43	-	-	-	C	234431959	A	C	234431959	2	2	232	1	0	0	0	0	0	0	0	1	17169	146	6	5		5	USP40	2	234431959	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	772428	234431959	8767414	487	16013										
USP40	0	genome.wustl.edu	37	chr2	234432035	234432035	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacatgtggagattctatcAcctgacaacacttttctcca	6	11	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	234432035	234432035	A	C	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	missense	c.2015	p.V672G	0.044	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC	ENSG00000085982	342	0	0	221	33	12.99	-	-	-	C	234432035	A	C	234432035	3	2	232	1	0	0	0	0	1	0	0	0	17169	159	6	5	1796	5	USP40	2	234432035	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	76	234432035	8767338	488	16014										
UGT1A10	0	genome.wustl.edu	37	chr2	234545957	234545957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgttttggactatcccaaAcccgtgatgcccaacatgat	7	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	234545957	234545957	A	C	SNP	UGT1A10	ENST00000344644	human	ensembl	69_37n	1	known	missense	c.789	p.K263N	0.664	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A10	HGNC	ENSG00000242515	612	0	0	425	53	11.04	-	-	-	C	234545957	A	C	234545957	3	2	232	1	0	0	0	0	1	0	0	0	17042	40	2	5	791	5	UGT1A10	2	234545957	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	113922	234545957	8653416	489	16015										
UGT1A4	0	genome.wustl.edu	37	chr2	234627957	234627957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggggcggtgctggctaagtAcctgtcgattcctgctgtgt	15	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	234627957	234627957	A	C	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	missense	c.491	p.Y164S	0.001	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	266	0	0	232	26	10	-	-	-	C	234627957	A	C	234627957	3	2	232	1	0	0	0	0	1	0	0	0	17044	391	14	5	493	5	UGT1A4	2	234627957	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	82000	234627957	8571416	490	16016										
UGT1A1	0	genome.wustl.edu	37	chr2	234669546	234669546	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctctcattcagatcacatgAccttcctgcagcgggtgaag	9	13	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	234669546	234669546	A	C	SNP	UGT1A1	ENST00000305208	human	ensembl	69_37n	1	known	missense	c.613	p.T205P	0.993	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635	215	0	0	143	24	14.2	-	-	-	C	234669546	A	C	234669546	3	2	232	1	0	0	0	0	1	0	0	0	17041	275	10	5	615	5	UGT1A1	2	234669546	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	41589	234669546	8529827	491	16017										
CXCR7	0	genome.wustl.edu	37	chr2	237489964	237489964	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctgcactacatccctttcAcctgccggctggagcacgcc	8	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	237489964	237489964	A	C	SNP	CXCR7	ENST00000272928	human	ensembl	69_37n	1	known	missense	c.856	p.T286P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Frt_met_rcpt	-	no_errors	CXCR7	HGNC	ENSG00000144476	117	1	0.84	77	21	21.21	-	-	-	C	237489964	A	C	237489964	3	2	232	1	0	0	0	0	1	0	0	0	4127	159	6	5	858	5	CXCR7	2	237489964	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2820418	237489964	5709409	492	16018										
COL6A3	0	genome.wustl.edu	37	chr2	238268800	238268800	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccaggcggaccacgctcAccctgttgtgagagacaaag	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	238268800	238268800	A	C	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.6213	p.G2071	0.911	pfam_Collagen	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	40	0	0	31	8	20.51	-	-	-	C	238268800	A	C	238268800	2	2	232	1	0	0	0	0	0	0	0	1	3731	146	6	5		5	COL6A3	2	238268800	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	778836	238268800	4930573	493	16019										
COL6A3	0	genome.wustl.edu	37	chr2	238275363	238275363	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttacaccagggcaaagggTttcatgcatcgcatcatgca	10	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	238275363	238275363	T	G	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.5467	p.T1823P	0.467	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	137	0	0	158	27	14.44	-	-	-	G	238275363	T	G	238275363	3	3	232	1	0	0	0	0	1	0	0	0	3731	1725	60	5	4202	5	COL6A3	2	238275363	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6563	238275363	4924010	494	16020										
ILKAP	0	genome.wustl.edu	37	chr2	239079291	239079291	+	Silent	SNP	C	C	T													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgggcgtcggctgcggacttCccttcccgggtctggatctt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239079291	239079291	C	T	SNP	ILKAP	ENST00000254654	human	ensembl	69_37n	-1	known	silent	c.1065	p.G355	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	ILKAP	HGNC	ENSG00000132323	37	0	0	38	8	17.39	-	-	-	T	239079291	C	T	239079291	2	4	232	1	0	0	0	0	0	0	0	1	7768	842	30	2		2	ILKAP	2	239079291	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	803928	239079291	4120082	495	16021	172	2	3	33	59438178	5	4	268	N	C	2.707073e-06
ILKAP	0	genome.wustl.edu	37	chr2	239079292	239079292	+	Missense_Mutation	SNP	C	C	T													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcgtcggctgcggacttcCcttcccgggtctggatcttt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239079292	239079292	C	T	SNP	ILKAP	ENST00000254654	human	ensembl	69_37n	-1	known	missense	c.1064	p.G355E	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	ILKAP	HGNC	ENSG00000132323	38	0	0	39	8	17.02	-	-	-	T	239079292	C	T	239079292	3	4	232	1	0	0	0	0	1	0	0	0	7768	623	22	4	118	4	ILKAP	2	239079292	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	1	239079292	4120081	496	16022	172	2	3	33	59438178	5	4	268	N	C	2.707073e-06
ILKAP	0	genome.wustl.edu	37	chr2	239079514	239079514	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgggaggaaatggggtctCagaacttctacttctctgaa	11	7	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239079514	239079514	C	T	SNP	ILKAP	ENST00000450411	human	ensembl	69_37n	-1	putative	missense	c.559	p.E187K	0.000	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_start_codon	ILKAP	HGNC	ENSG00000132323	105	0	0	81	13	13.83	-	-	-	T	239079514	C	T	239079514	3	4	232	1	0	0	0	0	1	0	0	0	7768	841	29	2		2	ILKAP	2	239079514	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	222	239079514	4119859	497	16023			3	33	59438178	5	4	268	N	C	2.707073e-06
ILKAP	0	genome.wustl.edu	37	chr2	239079528	239079528	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtctcagaacttctacttCtctgaaaactaagacacaat	6	10	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239079528	239079528	C	T	SNP	ILKAP	ENST00000450411	human	ensembl	69_37n	-1	putative	missense	c.545	p.R182K	0.002	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_start_codon	ILKAP	HGNC	ENSG00000132323	128	0	0	90	15	14.29	-	-	-	T	239079528	C	T	239079528	3	4	232	1	0	0	0	0	1	0	0	0	7768	928	32	2		2	ILKAP	2	239079528	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	14	239079528	4119845	498	16024			3	33	59438178	5	4	268	N	C	2.707073e-06
ILKAP	0	genome.wustl.edu	37	chr2	239079558	239079558	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagacacaattgggacaacCaccacccccgtgtgagattt	8	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239079558	239079558	C	T	SNP	ILKAP	ENST00000450411	human	ensembl	69_37n	-1	putative	nonsense	c.515	p.W172*	0.000	smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_start_codon	ILKAP	HGNC	ENSG00000132323	149	0	0	131	21	13.82	-	-	-	T	239079558	C	T	239079558	4	4	232	1	0	0	0	0	0	1	0	0	7768	609	21	4		4	ILKAP	2	239079558	Nonsense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	30	239079558	4119815	499	16025			3	33	59438178	5	4	268	N	C	2.707073e-06
ILKAP	0	genome.wustl.edu	37	chr2	239098525	239098525	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcttttccacaagctcttcActgccattcttctcttcctc	2	16	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	2	239098525	239098525	A	C	SNP	ILKAP	ENST00000254654	human	ensembl	69_37n	-1	known	missense	c.267	p.S89R	0.992	superfamily_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	ILKAP	HGNC	ENSG00000132323	85	0	0	106	14	11.67	-	-	-	C	239098525	A	C	239098525	3	2	232	1	0	0	0	0	1	0	0	0	7768	156	6	5	947	5	ILKAP	2	239098525	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18967	239098525	4100848	500	16026										
SETD5	0	genome.wustl.edu	37	chr3	9506511	9506511	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagggtcattgtggcctgttAcctggtagcctctcatcttg	11	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	9506511	9506511	A	C	SNP	SETD5	ENST00000488236	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	SETD5	HGNC	ENSG00000168137	73	0	0	77	18	18.56	-	-	-	C	9506511	A	C	9506511	1	2	232	0	1	0	0	0	0	0	0	0	14222	406	14	5		5	SETD5	3	9506511	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		9506511	188515919	501	16027										
BRPF1	0	genome.wustl.edu	37	chr3	9775898	9775898	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaccatacgagtgcccggTggagacctgccgaaaggtct	13	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	9775898	9775898	T	G	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	missense	c.74	p.V25G	1.000	pfscan_Znf_C2H2	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	154	1	0.65	147	20	11.83	-	-	-	G	9775898	T	G	9775898	3	3	232	1	0	0	0	0	1	0	0	0	1528	1696	59	5	76	5	BRPF1	3	9775898	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	269387	9775898	188246532	502	16028										
IRAK2	0	genome.wustl.edu	37	chr3	10280615	10280615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccctgggcaggggctgccAccccacttctccccacagag	10	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	10280615	10280615	A	C	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	missense	c.1657	p.T553P	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	65	0	0	82	25	23.36	-	-	-	C	10280615	A	C	10280615	3	2	232	1	0	0	0	0	1	0	0	0	7877	159	6	5	1703	5	IRAK2	3	10280615	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	504717	10280615	187741815	503	16029										
TATDN2	0	genome.wustl.edu	37	chr3	10312323	10312323	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctccctgccaaagagccAcctggagccaagcctagagg	11	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	10312323	10312323	A	C	SNP	TATDN2	ENST00000287652	human	ensembl	69_37n	1	known	missense	c.1457	p.H486P	0.451	NULL	pfam_TatD_superfamily	-	no_errors	TATDN2	HGNC	ENSG00000157014	116	0	0	145	29	16.57	-	-	-	C	10312323	A	C	10312323	3	2	232	1	0	0	0	0	1	0	0	0	15684	159	6	5	1467	5	TATDN2	3	10312323	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	31708	10312323	187710107	504	16030										
SLC6A11	0	genome.wustl.edu	37	chr3	10861418	10861418	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattggctatgcaacacaggTgattgaggcccatctgaatg	11	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	10861418	10861418	T	G	SNP	SLC6A11	ENST00000254488	human	ensembl	69_37n	1	known	missense	c.413	p.V138G	1.000	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,prints_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3,pfscan_Na/ntran_symport	-	no_errors	SLC6A11	HGNC	ENSG00000132164	222	0	0	163	22	11.83	-	-	-	G	10861418	T	G	10861418	3	3	232	1	0	0	0	0	1	0	0	0	14763	1696	59	5	423	5	SLC6A11	3	10861418	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	549095	10861418	187161012	505	16031										
HRH1	0	genome.wustl.edu	37	chr3	11301330	11301330	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcaacttctacctgcccAccttgctcatgctctggttc	5	16	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	11301330	11301330	A	C	SNP	HRH1	ENST00000397056	human	ensembl	69_37n	1	known	missense	c.607	p.T203P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H1_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH1	HGNC	ENSG00000196639	167	0	0	127	28	17.83	-	-	-	C	11301330	A	C	11301330	3	2	232	1	0	0	0	0	1	0	0	0	7406	159	6	5	609	5	HRH1	3	11301330	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	439912	11301330	186721100	506	16032										
XPC	0	genome.wustl.edu	37	chr3	14197937	14197937	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcagggcatacagagggTggttcttatataagccaatg	12	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	14197937	14197937	T	G	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	missense	c.1931	p.H644P	1.000	pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	225	2	0.88	237	38	13.82	-	-	-	G	14197937	T	G	14197937	3	3	232	1	0	0	0	0	1	0	0	0	17538	1696	59	5		5	XPC	3	14197937	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2896607	14197937	183824493	507	16033										
C3orf20	0	genome.wustl.edu	37	chr3	14746069	14746069	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattgtcaagaggggaaggcAcccaagaaggccttcaagtt	12	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	14746069	14746069	A	C	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.1104	p.A368	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	258	0	0	231	39	14.44	-	-	-	C	14746069	A	C	14746069	2	2	232	1	0	0	0	0	0	0	0	1	2233	146	6	5		5	C3orf20	3	14746069	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	548132	14746069	183276361	508	16034										
ZFYVE20	0	genome.wustl.edu	37	chr3	15115623	15115623	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatgaatggattccctgccActgcttcctcctcctcgtcc	7	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	15115623	15115623	A	C	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	missense	c.2021	p.V674G	0.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	156	0	0	188	22	10.43	-	-	-	C	15115623	A	C	15115623	3	2	232	1	0	0	0	0	1	0	0	0	17762	159	6	5	337	5	ZFYVE20	3	15115623	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	369554	15115623	182906807	509	16035										
RFTN1	0	genome.wustl.edu	37	chr3	16419313	16419313	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctgtggtgaaagttctccAccatctccctctccggaggg	10	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	16419313	16419313	A	C	SNP	RFTN1	ENST00000334133	human	ensembl	69_37n	-1	known	silent	c.738	p.G246	0.000	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378	173	1	0.57	91	23	20.18	-	-	-	C	16419313	A	C	16419313	2	2	232	1	0	0	0	0	0	0	0	1	13341	146	6	5		5	RFTN1	3	16419313	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1303690	16419313	181603117	510	16036										
RFTN1	0	genome.wustl.edu	37	chr3	16419359	16419359	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggctgcttggcgaggggcAcctcccctctggggcctgag	17	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	16419359	16419359	A	C	SNP	RFTN1	ENST00000334133	human	ensembl	69_37n	-1	known	missense	c.692	p.V231G	0.000	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378	168	0	0	83	21	20.19	-	-	-	C	16419359	A	C	16419359	3	2	232	1	0	0	0	0	1	0	0	0	13341	159	6	5	1068	5	RFTN1	3	16419359	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	16419359	181603071	511	16037										
KCNH8	0	genome.wustl.edu	37	chr3	19575395	19575395	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcttcggaaacatctttgcAcctagttctcccaagcagat	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	19575395	19575395	A	C	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.3128	p.H1043P	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	281	0	0	202	29	12.5	-	-	-	C	19575395	A	C	19575395	3	2	232	1	0	0	0	0	1	0	0	0	8092	159	6	5	3190	5	KCNH8	3	19575395	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3156036	19575395	178447035	512	16038										
KAT2B	0	genome.wustl.edu	37	chr3	20189800	20189800	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcctccagcaggtgaaggTgggtgtcctctttattcacc	10	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	20189800	20189800	T	G	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	splice_site	c.2220+2	e16+2	1.000	-	-	-	no_errors	KAT2B	HGNC	ENSG00000114166	192	0	0	197	29	12.78	-	-	-	G	20189800	T	G	20189800	5	3	232	1	0	0	0	0	0	0	1	0	8036	1710	59	5	2284	5	KAT2B	3	20189800	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	614405	20189800	177832630	513	16039										
SLC4A7	0	genome.wustl.edu	37	chr3	27463212	27463212	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaaaaagtctacttcgcccAccaggacgttggatgcctca	8	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	27463212	27463212	A	C	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.1325	p.V442G	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	177	0	0	125	19	13.19	-	-	-	C	27463212	A	C	27463212	3	2	232	1	0	0	0	0	1	0	0	0	14747	159	6	5	2414	5	SLC4A7	3	27463212	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7273412	27463212	170559218	514	16040										
STT3B	0	genome.wustl.edu	37	chr3	31667447	31667447	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttttttaaattctgcaggTgggaaaagctatgtcttcta	8	5	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	31667447	31667447	T	G	SNP	STT3B	ENST00000295770	human	ensembl	69_37n	1	known	missense	c.1901	p.V634G	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527	166	1	0.6	168	27	13.71	-	-	-	G	31667447	T	G	31667447	3	3	232	1	0	0	0	0	1	0	0	0	15425	1710	59	5	1951	5	STT3B	3	31667447	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4204235	31667447	166354983	515	16041										
FBXL2	0	genome.wustl.edu	37	chr3	33420262	33420262	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtttttctgacattattcAcctgttaaagatgaaagagc	8	6	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	33420262	33420262	A	C	SNP	FBXL2	ENST00000446237	human	ensembl	69_37n	1	known	missense	c.110	p.H37P	0.000	NULL	NULL	-	no_errors	FBXL2	HGNC	ENSG00000153558	111	0	0	75	20	20.83	-	-	-	C	33420262	A	C	33420262	3	2	232	1	0	0	0	0	1	0	0	0	5762	174	6	5		5	FBXL2	3	33420262	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1752815	33420262	164602168	516	16042										
DCLK3	0	genome.wustl.edu	37	chr3	36759653	36759653	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgccagcagcccacatgtccAcctccagtccataacctgcg	7	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	36759653	36759653	A	C	SNP	DCLK3	ENST00000416516	human	ensembl	69_37n	-1	known	missense	c.1601	p.V534G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673	324	3	0.91	257	43	14.33	-	-	-	C	36759653	A	C	36759653	3	2	232	1	0	0	0	0	1	0	0	0	4324	159	6	5	353	5	DCLK3	3	36759653	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3339391	36759653	161262777	517	16043										
TRANK1	0	genome.wustl.edu	37	chr3	36872510	36872510	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgctcgatgtcctgcaccAccagcttgccttcatcaatg	7	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	36872510	36872510	A	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.8432	p.V2811G	0.998	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	435	3	0.68	265	39	12.79	-	-	-	C	36872510	A	C	36872510	3	2	232	1	0	0	0	0	1	0	0	0	16550	159	6	5	357	5	TRANK1	3	36872510	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	112857	36872510	161149920	518	16044										
TRANK1	0	genome.wustl.edu	37	chr3	36898835	36898835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgcaaggccccaaggcccAcctgagcatgtccttccccc	9	19	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	36898835	36898835	A	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.2246	p.V749G	0.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	317	3	0.93	293	71	19.45	-	-	-	C	36898835	A	C	36898835	3	2	232	1	0	0	0	0	1	0	0	0	16550	159	6	5	6579	5	TRANK1	3	36898835	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26325	36898835	161123595	519	16045										
GOLGA4	0	genome.wustl.edu	37	chr3	37368276	37368276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataggcttgagtcagaaagTgctgcaaaattagcagagtt	12	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	37368276	37368276	T	G	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.4899	p.S1633R	0.974	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	350	0	0	344	45	11.57	-	-	-	G	37368276	T	G	37368276	3	3	232	1	0	0	0	0	1	0	0	0	6607	1693	59	5	5023	5	GOLGA4	3	37368276	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	469441	37368276	160654154	520	16046										
DLEC1	0	genome.wustl.edu	37	chr3	38158352	38158352	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagggggtgccctccggccAcctgtactgtatcagcccca	12	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	38158352	38158352	A	C	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	missense	c.4151	p.H1384P	0.005	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	93	0	0	75	13	14.77	-	-	-	C	38158352	A	C	38158352	3	2	232	1	0	0	0	0	1	0	0	0	4588	159	6	5	4265	5	DLEC1	3	38158352	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	790076	38158352	159864078	521	16047										
OXSR1	0	genome.wustl.edu	37	chr3	38263143	38263143	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagaaagacctttgttggcAccccttgttggatggcacct	11	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	38263143	38263143	A	C	SNP	OXSR1	ENST00000311806	human	ensembl	69_37n	1	known	missense	c.565	p.T189P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	OXSR1	HGNC	ENSG00000172939	280	1	0.36	257	41	13.71	-	-	-	C	38263143	A	C	38263143	3	2	232	1	0	0	0	0	1	0	0	0	11409	159	6	5	587	5	OXSR1	3	38263143	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	104791	38263143	159759287	522	16048										
SCN5A	0	genome.wustl.edu	37	chr3	38592335	38592335	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatggatgcggtccccactcAccatgggcaggtccatgttg	12	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	38592335	38592335	A	C	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5528	p.V1843G	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	160	0	0	131	24	15.29	-	-	-	C	38592335	A	C	38592335	3	2	232	1	0	0	0	0	1	0	0	0	14010	159	6	5	526	5	SCN5A	3	38592335	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	329192	38592335	159430095	523	16049										
SCN10A	0	genome.wustl.edu	37	chr3	38783874	38783874	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcaccacgatgcacaaggTgatggtgagctctgcaaagg	13	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	38783874	38783874	T	G	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.2014	p.T672P	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	148	1	0.67	118	24	16.78	-	-	-	G	38783874	T	G	38783874	3	3	232	1	0	0	0	0	1	0	0	0	14000	1696	59	5	3916	5	SCN10A	3	38783874	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	191539	38783874	159238556	524	16050										
SCN10A	0	genome.wustl.edu	37	chr3	38783992	38783992	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacaagctggtcaagcagggTgggcacttctgttcagactc	13	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	38783992	38783992	T	G	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	silent	c.1896	p.P632	0.981	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	226	1	0.44	187	35	15.77	-	-	-	G	38783992	T	G	38783992	2	3	232	1	0	0	0	0	0	0	0	1	14000	1683	59	5		5	SCN10A	3	38783992	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	118	38783992	159238438	525	16051										
MOBP	0	genome.wustl.edu	37	chr3	39543651	39543651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacactgctgcccgccgttcAccttcctcaattccaagaag	6	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	39543651	39543651	A	C	SNP	MOBP	ENST00000354668	human	ensembl	69_37n	1	known	missense	c.91	p.T31P	1.000	NULL	NULL	-	no_errors	MOBP	HGNC	ENSG00000168314	104	0	0	92	15	13.89	-	-	-	C	39543651	A	C	39543651	3	2	232	1	0	0	0	0	1	0	0	0	9760	159	6	5	93	5	MOBP	3	39543651	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	759659	39543651	158478779	526	16052										
MYRIP	0	genome.wustl.edu	37	chr3	40223805	40223805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaagggaccaaggccaacAcccgagagcagagtctgctc	12	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	40223805	40223805	A	C	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.968	p.H323P	0.007	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	105	0	0	63	25	28.41	-	-	-	C	40223805	A	C	40223805	3	2	232	1	0	0	0	0	1	0	0	0	10172	159	6	5	998	5	MYRIP	3	40223805	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	680154	40223805	157798625	527	16053										
ENTPD3	0	genome.wustl.edu	37	chr3	40468764	40468764	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctcctctactccacaggTggggaatagcagcatagcct	9	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	40468764	40468764	T	G	SNP	ENTPD3	ENST00000301825	human	ensembl	69_37n	1	known	missense	c.1355	p.V452G	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD3	HGNC	ENSG00000168032	144	1	0.69	180	29	13.81	-	-	-	G	40468764	T	G	40468764	3	3	232	1	0	0	0	0	1	0	0	0	5177	1710	59	5	1393	5	ENTPD3	3	40468764	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	244959	40468764	157553666	528	16054										
ZNF619	0	genome.wustl.edu	37	chr3	40523417	40523417	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggatgtggctgtgtacttcAcccagaatgaatgggccagc	13	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	40523417	40523417	A	C	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	missense	c.88	p.T30P	0.995	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	239	2	0.83	240	31	11.44	-	-	-	C	40523417	A	C	40523417	3	2	232	1	0	0	0	0	1	0	0	0	18139	159	6	5	116	5	ZNF619	3	40523417	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	54653	40523417	157499013	529	16055										
NKTR	0	genome.wustl.edu	37	chr3	42680768	42680768	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtaaagtgttgggtgaagTggggaaacaggacagcagct	16	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	42680768	42680768	T	G	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.3572	p.V1191G	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	145	1	0.68	151	22	12.64	-	-	-	G	42680768	T	G	42680768	3	3	232	1	0	0	0	0	1	0	0	0	10520	1696	59	5	3618	5	NKTR	3	42680768	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2157351	42680768	155341662	530	16056										
CCBP2	0	genome.wustl.edu	37	chr3	42906995	42906995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgccgtgcttggatggcAcctggcacctggcactgccc	14	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	42906995	42906995	A	C	SNP	CCBP2	ENST00000273145	human	ensembl	69_37n	1	known	missense	c.1001	p.H334P	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCBP2	HGNC	ENSG00000144648	308	0	0	345	65	15.78	-	-	-	C	42906995	A	C	42906995	3	2	232	1	0	0	0	0	1	0	0	0	2759	159	6	5	1003	5	CCBP2	3	42906995	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	226227	42906995	155115435	531	16057										
ZNF501	0	genome.wustl.edu	37	chr3	44776284	44776284	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcccatcccttattaaacAccagcgaattcatactggag	7	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	44776284	44776284	A	C	SNP	ZNF501	ENST00000396048	human	ensembl	69_37n	1	known	missense	c.371	p.H124P	0.768	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF501	HGNC	ENSG00000186446	165	0	0	142	23	13.94	-	-	-	C	44776284	A	C	44776284	3	2	232	1	0	0	0	0	1	0	0	0	18045	159	6	5	373	5	ZNF501	3	44776284	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1869289	44776284	153246146	532	16058										
LARS2	0	genome.wustl.edu	37	chr3	45518026	45518026	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccctgaagccatttatggcAcctcccacgtggccatctcg	8	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	45518026	45518026	A	C	SNP	LARS2	ENST00000265537	human	ensembl	69_37n	1	known	missense	c.925	p.T309P	0.158	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_bac/mito	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-synth_Ia_bac/mito,tigrfam_Leu-tRNA-synth_Ia_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376	154	1	0.64	92	23	20	-	-	-	C	45518026	A	C	45518026	3	2	232	1	0	0	0	0	1	0	0	0	8689	159	6	5	955	5	LARS2	3	45518026	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	741742	45518026	152504404	533	16059										
CCR1	0	genome.wustl.edu	37	chr3	46245261	46245261	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaaagtgaaggctgcaggTgtggtgagtgaattcccatt	15	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	46245261	46245261	T	G	SNP	CCR1	ENST00000296140	human	ensembl	69_37n	-1	known	missense	c.544	p.T182P	0.478	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_Chemokine_CCR5	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_P2_purnocptor,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	247	1	0.4	163	23	12.3	-	-	-	G	46245261	T	G	46245261	3	3	232	1	0	0	0	0	1	0	0	0	2968	1696	59	5	527	5	CCR1	3	46245261	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	727235	46245261	151777169	534	16060										
CCRL2	0	genome.wustl.edu	37	chr3	46450531	46450531	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttccatctgcgtagtaacAccccacttcaacccaggggg	9	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	46450531	46450531	A	C	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	missense	c.997	p.T333P	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	296	0	0	210	51	19.47	-	-	-	C	46450531	A	C	46450531	3	2	232	1	0	0	0	0	1	0	0	0	2979	159	6	5	1003	5	CCRL2	3	46450531	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	205270	46450531	151571899	535	16061										
LRRC2	0	genome.wustl.edu	37	chr3	46592987	46592987	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctcttctcaagcctttccAcctccttcttctgccaagct	4	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	46592987	46592987	A	C	SNP	LRRC2	ENST00000296144	human	ensembl	69_37n	-1	known	missense	c.95	p.V32G	0.131	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC2	HGNC	ENSG00000163827	124	0	0	115	21	15.44	-	-	-	C	46592987	A	C	46592987	3	2	232	1	0	0	0	0	1	0	0	0	9042	159	6	5	1052	5	LRRC2	3	46592987	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	142456	46592987	151429443	536	16062										
NBEAL2	0	genome.wustl.edu	37	chr3	47045770	47045770	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggccccatcccaccccatAcccaggtacggaaccaggtg	9	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	47045770	47045770	A	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.6085	p.T2029P	0.992	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	37	0	0	24	6	20	-	-	-	C	47045770	A	C	47045770	3	2	232	1	0	0	0	0	1	0	0	0	10261	391	14	5	6231	5	NBEAL2	3	47045770	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	452783	47045770	150976660	537	16063										
DHX30	0	genome.wustl.edu	37	chr3	47859583	47859583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacccatgtgtgtcaaccctAccccaggagggaccatctct	8	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	47859583	47859583	A	C	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	missense	c.100	p.T34P	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	73	0	0	87	16	15.53	-	-	-	C	47859583	A	C	47859583	3	2	232	1	0	0	0	0	1	0	0	0	4540	391	14	5	106	5	DHX30	3	47859583	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	813813	47859583	150162847	538	16064										
MAP4	0	genome.wustl.edu	37	chr3	47957818	47957818	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatgtccttcaacaagcccActtcttttactgtggacgga	7	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	47957818	47957818	A	C	SNP	MAP4	ENST00000360240	human	ensembl	69_37n	-1	known	missense	c.1499	p.V500G	0.012	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	250	0	0	264	37	12.17	-	-	-	C	47957818	A	C	47957818	3	2	232	1	0	0	0	0	1	0	0	0	9329	159	6	5	3370	5	MAP4	3	47957818	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	98235	47957818	150064612	539	16065										
MAP4	0	genome.wustl.edu	37	chr3	47958502	47958502	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatatctttagccaatgccAcctcggtttttgtagctagt	7	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	47958502	47958502	A	C	SNP	MAP4	ENST00000360240	human	ensembl	69_37n	-1	known	missense	c.815	p.V272G	0.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	388	2	0.51	405	77	15.91	-	-	-	C	47958502	A	C	47958502	3	2	232	1	0	0	0	0	1	0	0	0	9329	159	6	5	4054	5	MAP4	3	47958502	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	684	47958502	150063928	540	16066										
COL7A1	0	genome.wustl.edu	37	chr3	48631839	48631839	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcactgtggcaaagcgcacAccctgtgcactggctgctcc	11	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	48631839	48631839	A	C	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.228	p.G76	0.294	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	50	0	0	30	10	25	-	-	-	C	48631839	A	C	48631839	2	2	232	1	0	0	0	0	0	0	0	1	3734	146	6	5		5	COL7A1	3	48631839	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	673337	48631839	149390591	541	16067										
CELSR3	0	genome.wustl.edu	37	chr3	48696841	48696841	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacaatgctattctctttcAcccgcacctcaaactcctca	2	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	48696841	48696841	A	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.3227	p.V1076G	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	157	1	0.63	44	12	21.43	-	-	-	C	48696841	A	C	48696841	3	2	232	1	0	0	0	0	1	0	0	0	3252	159	6	5	6851	5	CELSR3	3	48696841	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	65002	48696841	149325589	542	16068										
NCKIPSD	0	genome.wustl.edu	37	chr3	48718693	48718693	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacagggtgggtagcagggTggccctgctgtgccgcccac	17	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	48718693	48718693	T	G	SNP	NCKIPSD	ENST00000439518	human	ensembl	69_37n	-1	putative	silent	c.1119	p.P373	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_stop_codon:bad_bp_length_for_coding_region	NCKIPSD	HGNC	ENSG00000213672	24	0	0	18	10	35.71	-	-	-	G	48718693	T	G	48718693	2	3	232	1	0	0	0	0	0	0	0	1	10297	1711	59	5		5	NCKIPSD	3	48718693	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	21852	48718693	149303737	543	16069										
P4HTM	0	genome.wustl.edu	37	chr3	49042366	49042366	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcaggttgttcgatatggTgaggggggccactaccatgc	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49042366	49042366	T	G	SNP	P4HTM	ENST00000343546	human	ensembl	69_37n	1	known	silent	c.960	p.G320	0.962	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	23	0	0	24	5	17.24	-	-	-	G	49042366	T	G	49042366	2	3	232	1	0	0	0	0	0	0	0	1	11433	1683	59	5		5	P4HTM	3	49042366	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	323673	49042366	148980064	544	16070										
P4HTM	0	genome.wustl.edu	37	chr3	49042459	49042459	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggtagccaacgagtctgtAcccttcgagacctcctgccg	10	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49042459	49042459	A	C	SNP	P4HTM	ENST00000343546	human	ensembl	69_37n	1	known	silent	c.1053	p.V351	0.746	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	30	0	0	22	9	28.12	-	-	-	C	49042459	A	C	49042459	2	2	232	1	0	0	0	0	0	0	0	1	11433	378	14	5		5	P4HTM	3	49042459	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	93	49042459	148979971	545	16071										
CCDC36	0	genome.wustl.edu	37	chr3	49293985	49293985	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggcatgtaaaggacaaggTggtgcagactaactgcaaga	13	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49293985	49293985	T	G	SNP	CCDC36	ENST00000296449	human	ensembl	69_37n	1	known	missense	c.1055	p.V352G	0.005	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421	130	1	0.76	106	21	16.28	-	-	-	G	49293985	T	G	49293985	3	3	232	1	0	0	0	0	1	0	0	0	2834	1696	59	5	1081	5	CCDC36	3	49293985	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	251526	49293985	148728445	546	16072										
DAG1	0	genome.wustl.edu	37	chr3	49548056	49548056	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtggttatggctcagtcccActggcccagtgaaccctcag	11	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49548056	49548056	A	C	SNP	DAG1	ENST00000308775	human	ensembl	69_37n	1	known	missense	c.89	p.H30P	0.710	NULL	pfam_DAG1,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402	68	0	0	64	15	18.99	-	-	-	C	49548056	A	C	49548056	3	2	232	1	0	0	0	0	1	0	0	0	4257	159	6	5	91	5	DAG1	3	49548056	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	254071	49548056	148474374	547	16073										
RNF123	0	genome.wustl.edu	37	chr3	49735342	49735342	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggacacagcaactttggcAccatccgctctaccacatgc	7	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49735342	49735342	A	C	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.367	p.T123P	0.999	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	147	1	0.67	74	16	17.39	-	-	-	C	49735342	A	C	49735342	3	2	232	1	0	0	0	0	1	0	0	0	13519	159	6	5	385	5	RNF123	3	49735342	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	187286	49735342	148287088	548	16074										
UBA7	0	genome.wustl.edu	37	chr3	49849909	49849909	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcaattcccgagaaagtcAccaagtctccatcacggaag	7	14	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49849909	49849909	A	C	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.626	p.V209G	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	43	0	0	37	7	15.91	-	-	-	C	49849909	A	C	49849909	3	2	232	1	0	0	0	0	1	0	0	0	16930	159	6	5	2488	5	UBA7	3	49849909	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	114567	49849909	148172521	549	16075										
MST1R	0	genome.wustl.edu	37	chr3	49933682	49933682	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaactaggttggcactgggTggatggggtgggggtaggaa	22	3	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	49933682	49933682	T	G	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	silent	c.2595	p.P865	0.001	pirsf_Tyr_kinase_HGF/MSP_rcpt,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	42	0	0	65	8	10.96	-	-	-	G	49933682	T	G	49933682	2	3	232	1	0	0	0	0	0	0	0	1	9963	1683	59	5		5	MST1R	3	49933682	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	83773	49933682	148088748	550	16076										
RBM6	0	genome.wustl.edu	37	chr3	50004934	50004934	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagaaaggtttgctcccgggTggaacagggattatcctcct	12	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	50004934	50004934	T	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.76	p.W26G	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	139	0	0	134	25	15.72	-	-	-	G	50004934	T	G	50004934	3	3	232	1	0	0	0	0	1	0	0	0	13227	1696	59	5	82	5	RBM6	3	50004934	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	71252	50004934	148017496	551	16077										
ZMYND10	0	genome.wustl.edu	37	chr3	50381208	50381208	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggggcttgaagtcctccAccctgcagaacacagggaac	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	50381208	50381208	A	C	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	missense	c.275	p.V92G	1.000	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	44	0	0	51	14	21.54	-	-	-	C	50381208	A	C	50381208	3	2	232	1	0	0	0	0	1	0	0	0	17801	159	6	5	1087	5	ZMYND10	3	50381208	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	376274	50381208	147641222	552	16078										
MAPKAPK3	0	genome.wustl.edu	37	chr3	50677900	50677900	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatgtgtatgagaacatgcAccatggcaagcgctgtctcc	12	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	50677900	50677900	A	C	SNP	MAPKAPK3	ENST00000357955	human	ensembl	69_37n	1	known	missense	c.323	p.H108P	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738	155	1	0.64	133	19	12.34	-	-	-	C	50677900	A	C	50677900	3	2	232	1	0	0	0	0	1	0	0	0	9361	159	6	5	329	5	MAPKAPK3	3	50677900	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	296692	50677900	147344530	553	16079										
MAPKAPK3	0	genome.wustl.edu	37	chr3	50679147	50679147	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcttttacagcatggaaggTggtgagttgttcagcaggat	13	6	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	50679147	50679147	T	G	SNP	MAPKAPK3	ENST00000357955	human	ensembl	69_37n	1	known	silent	c.369	p.G123	0.986	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738	49	0	0	38	16	29.63	-	-	-	G	50679147	T	G	50679147	2	3	232	1	0	0	0	0	0	0	0	1	9361	1683	59	5		5	MAPKAPK3	3	50679147	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1247	50679147	147343283	554	16080										
VPRBP	0	genome.wustl.edu	37	chr3	51457421	51457421	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attatactgtccagcgtaggTggggaaggaagatgtctgtc	14	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	51457421	51457421	T	G	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	silent	c.1656	p.P552	0.657	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	245	2	0.81	306	40	11.46	-	-	-	G	51457421	T	G	51457421	2	3	232	1	0	0	0	0	0	0	0	1	17282	1683	59	5		5	VPRBP	3	51457421	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	778274	51457421	146565009	555	16081										
RAD54L2	0	genome.wustl.edu	37	chr3	51664815	51664815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgaggaagaagagaagggTggcacccatgtcaatgatgt	15	5	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	51664815	51664815	T	G	SNP	RAD54L2	ENST00000432863	human	ensembl	69_37n	1	novel	missense	c.178	p.W60G	0.997	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RAD54L2	HGNC	ENSG00000164080	93	0	0	73	23	23.96	-	-	-	G	51664815	T	G	51664815	3	3	232	1	0	0	0	0	1	0	0	0	13077	1683	59	5	711	5	RAD54L2	3	51664815	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	207394	51664815	146357615	556	16082										
GRM2	0	genome.wustl.edu	37	chr3	51752140	51752140	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgctttgaagaccccatacTcccgccctgacacagctgct	7	17	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	51752140	51752140	T	C	SNP	GRM2	ENST00000475478	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.117	-	-	-	no_errors	GRM2	HGNC	ENSG00000164082	116	1	0.85	180	33	15.42	-	-	-	C	51752140	T	C	51752140	1	2	232	0	1	0	0	0	0	0	0	0	6848	1566	54	5		5	GRM2	3	51752140	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	87325	51752140	146270290	557	16083										
IQCF3	0	genome.wustl.edu	37	chr3	51864453	51864453	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgcatcacagaaaaagggTgaaggcagctgggcagatcc	13	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	51864453	51864453	T	G	SNP	IQCF3	ENST00000437810	human	ensembl	69_37n	1	known	missense	c.101	p.V34G	0.000	smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF3	HGNC	ENSG00000229972	80	0	0	104	18	14.75	-	-	-	G	51864453	T	G	51864453	3	3	232	1	0	0	0	0	1	0	0	0	7863	1696	59	5	111	5	IQCF3	3	51864453	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	112313	51864453	146157977	558	16084										
PARP3	0	genome.wustl.edu	37	chr3	51981810	51981810	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacatgttcctgggtgaggTggccctgggcagagagcacc	15	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	51981810	51981810	T	G	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	missense	c.1352	p.V451G	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	103	1	0.95	206	33	13.75	-	-	-	G	51981810	T	G	51981810	3	3	232	1	0	0	0	0	1	0	0	0	11535	1696	59	5	1390	5	PARP3	3	51981810	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	117357	51981810	146040620	559	16085										
ALAS1	0	genome.wustl.edu	37	chr3	52240018	52240018	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaatgactcaaccctcttcAccctggctaagatgatgcca	6	15	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52240018	52240018	A	C	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	missense	c.964	p.T322P	1.000	pfam_Aminotransferase_I/II,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	133	0	0	117	27	18.75	-	-	-	C	52240018	A	C	52240018	3	2	232	1	0	0	0	0	1	0	0	0	484	159	6	5	982	5	ALAS1	3	52240018	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	258208	52240018	145782412	560	16086										
ALAS1	0	genome.wustl.edu	37	chr3	52242155	52242155	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccatgagtttggagcaatcAccttcgtggatgaggtccac	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52242155	52242155	A	C	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	missense	c.1222	p.T408P	1.000	pfam_Aminotransferase_I/II,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	112	1	0.88	101	21	17.07	-	-	-	C	52242155	A	C	52242155	3	2	232	1	0	0	0	0	1	0	0	0	484	159	6	5	1248	5	ALAS1	3	52242155	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2137	52242155	145780275	561	16087										
ALAS1	0	genome.wustl.edu	37	chr3	52246404	52246404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acggattgcccccacccctcAccacacaccccagatgatga	6	19	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52246404	52246404	A	C	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	missense	c.1730	p.H577P	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	454	2	0.44	561	75	11.79	-	-	-	C	52246404	A	C	52246404	3	2	232	1	0	0	0	0	1	0	0	0	484	159	6	5	1764	5	ALAS1	3	52246404	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4249	52246404	145776026	562	16088										
DNAH1	0	genome.wustl.edu	37	chr3	52405972	52405972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgattccaggttgcctgggTgaagtggatggactcctcag	14	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52405972	52405972	T	G	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.6536	p.V2179G	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	45	0	0	41	9	18	-	-	-	G	52405972	T	G	52405972	3	3	232	1	0	0	0	0	1	0	0	0	4633	1696	59	5	6698	5	DNAH1	3	52405972	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	159568	52405972	145616458	563	16089										
PHF7	0	genome.wustl.edu	37	chr3	52456899	52456899	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacctgctgcagccacaggTgaggctggagggatgggccg	17	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52456899	52456899	T	G	SNP	PHF7	ENST00000327906	human	ensembl	69_37n	1	known	splice_site	c.919+2	e9+2	0.990	-	-	-	no_errors	PHF7	HGNC	ENSG00000010318	129	0	0	139	26	15.76	-	-	-	G	52456899	T	G	52456899	5	3	232	1	0	0	0	0	0	0	1	0	11913	1710	59	5	955	5	PHF7	3	52456899	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	50927	52456899	145565531	564	16090										
NEK4	0	genome.wustl.edu	37	chr3	52794854	52794854	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaagagagtggttgggggTggattacttcatgatttgat	15	3	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52794854	52794854	T	G	SNP	NEK4	ENST00000233027	human	ensembl	69_37n	-1	known	missense	c.920	p.H307P	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904	167	1	0.6	110	25	18.25	-	-	-	G	52794854	T	G	52794854	3	3	232	1	0	0	0	0	1	0	0	0	10398	1696	59	5	1649	5	NEK4	3	52794854	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	337955	52794854	145227576	565	16091										
SFMBT1	0	genome.wustl.edu	37	chr3	52941319	52941319	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgggtcatcctcatcttcAcccccacttccctgcaggaa	6	17	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	52941319	52941319	A	C	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	silent	c.2097	p.G699	0.955	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	200	0	0	247	36	12.72	-	-	-	C	52941319	A	C	52941319	2	2	232	1	0	0	0	0	0	0	0	1	14245	146	6	5		5	SFMBT1	3	52941319	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	146465	52941319	145081111	566	16092										
PRKCD	0	genome.wustl.edu	37	chr3	53223999	53223999	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaagcggaggttggagccAcctttcaggcccaaagtggt	14	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	53223999	53223999	A	C	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	silent	c.1854	p.P618	0.288	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	229	0	0	164	32	16.24	-	-	-	C	53223999	A	C	53223999	2	2	232	1	0	0	0	0	0	0	0	1	12590	146	6	5		5	PRKCD	3	53223999	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	282680	53223999	144798431	567	16093										
CACNA1D	0	genome.wustl.edu	37	chr3	53839164	53839164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagacgcctactacctcccAccccagcatgtgaggccaga	10	16	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	53839164	53839164	A	C	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.5800	p.T1934P	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	137	1	0.72	133	35	20.83	-	-	-	C	53839164	A	C	53839164	3	2	232	1	0	0	0	0	1	0	0	0	2566	159	6	5	6090	5	CACNA1D	3	53839164	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	615165	53839164	144183266	568	16094										
LRTM1	0	genome.wustl.edu	37	chr3	54952523	54952523	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaatcgctctttttcttccAccttcccaggatcattggtt	5	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	54952523	54952523	A	C	SNP	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	missense	c.1001	p.V334G	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	273	2	0.72	166	26	13.54	-	-	-	C	54952523	A	C	54952523	3	2	232	1	0	0	0	0	1	0	0	0	9110	159	6	5	40	5	LRTM1	3	54952523	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1113359	54952523	143069907	569	16095										
CACNA2D3	0	genome.wustl.edu	37	chr3	55108164	55108164	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgcaagggagtgtgggggTgcgccgagtctccaagccca	16	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	55108164	55108164	T	G	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	silent	c.3207	p.G1069	0.997	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	260	0	0	203	31	13.25	-	-	-	G	55108164	T	G	55108164	2	3	232	1	0	0	0	0	0	0	0	1	2575	1683	59	5		5	CACNA2D3	3	55108164	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	155641	55108164	142914266	570	16096										
ERC2	0	genome.wustl.edu	37	chr3	56468827	56468827	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgggtaggttgttgaagccAccccttcatgatcactcaga	10	10	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	56468827	56468827	A	C	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	missense	c.209	p.V70G	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	327	1	0.3	349	40	10.28	-	-	-	C	56468827	A	C	56468827	3	2	232	1	0	0	0	0	1	0	0	0	5248	159	6	5	2718	5	ERC2	3	56468827	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1360663	56468827	141553603	571	16097										
ASB14	0	genome.wustl.edu	37	chr3	57311899	57311899	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcaagcatcactcgaacaAcctttccagagagatgttgc	7	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	57311899	57311899	A	C	SNP	ASB14	ENST00000389601	human	ensembl	69_37n	-1	known	missense	c.1481	p.V494G	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB14	HGNC	ENSG00000239388	115	1	0.86	71	21	22.83	-	-	-	C	57311899	A	C	57311899	3	2	232	1	0	0	0	0	1	0	0	0	1022	43	2	5	290	5	ASB14	3	57311899	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	843072	57311899	140710531	572	16098										
FLNB	0	genome.wustl.edu	37	chr3	58084468	58084468	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtgacattggtgtggaggTggaagatccccaggggaaga	19	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	58084468	58084468	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.1178	p.V393G	0.999	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	61	0	0	53	21	28.38	-	-	-	G	58084468	T	G	58084468	3	3	232	1	0	0	0	0	1	0	0	0	5980	1696	59	5	1208	5	FLNB	3	58084468	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	772569	58084468	139937962	573	16099										
FLNB	0	genome.wustl.edu	37	chr3	58135956	58135956	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgaacctgaaaatcccaggTgggcgtcggggactagtagg	15	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	58135956	58135956	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	splice_site	c.6367+2	e38+2	1.000	-	-	-	no_errors	FLNB	HGNC	ENSG00000136068	64	0	0	58	14	19.44	-	-	-	G	58135956	T	G	58135956	5	3	232	1	0	0	0	0	0	0	1	0	5980	1710	59	5	6616	5	FLNB	3	58135956	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51488	58135956	139886474	574	16100										
ACOX2	0	genome.wustl.edu	37	chr3	58519184	58519184	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atactcacagtctccaggccAccatttggtggcagtcagcg	10	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	58519184	58519184	A	C	SNP	ACOX2	ENST00000302819	human	ensembl	69_37n	-1	known	missense	c.571	p.W191G	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306	102	0	0	104	23	17.97	-	-	-	C	58519184	A	C	58519184	3	2	232	1	0	0	0	0	1	0	0	0	159	159	6	5	1518	5	ACOX2	3	58519184	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	383228	58519184	139503246	575	16101										
PTPRG	0	genome.wustl.edu	37	chr3	62278136	62278136	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatgttatgtgcccttaccAccctgtcccagcaactggag	9	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	62278136	62278136	A	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.4096	p.T1366P	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	291	0	0	277	58	17.26	-	-	-	C	62278136	A	C	62278136	3	2	232	1	0	0	0	0	1	0	0	0	12885	159	6	5	4210	5	PTPRG	3	62278136	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3758952	62278136	135744294	576	16102										
CADPS	0	genome.wustl.edu	37	chr3	62578370	62578370	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctctctgtgaacagcttcAccttcacagctggcagtgca	9	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	62578370	62578370	A	C	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.1379	p.V460G	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	161	1	0.61	151	26	14.61	-	-	-	C	62578370	A	C	62578370	3	2	232	1	0	0	0	0	1	0	0	0	2595	159	6	5	2851	5	CADPS	3	62578370	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	300234	62578370	135444060	577	16103										
SYNPR	0	genome.wustl.edu	37	chr3	63542230	63542230	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaatttaggttgcaccaggTgacgtttgaggtgcccacct	12	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	63542230	63542230	T	G	SNP	SYNPR	ENST00000478300	human	ensembl	69_37n	1	known	missense	c.221	p.V74G	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630	70	0	0	46	13	22.03	-	-	-	G	63542230	T	G	63542230	3	3	232	1	0	0	0	0	1	0	0	0	15551	1696	59	5	263	5	SYNPR	3	63542230	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	963860	63542230	134480200	578	16104										
ATXN7	0	genome.wustl.edu	37	chr3	63973893	63973893	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggacccgcatcccgccccTcctagaacgtcacaggagcc	10	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	63973893	63973893	T	C	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	silent	c.1254	p.P418	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	359	3	0.83	278	33	10.58	-	-	-	C	63973893	T	C	63973893	2	2	232	1	0	0	0	0	0	0	0	1	1219	1538	54	5		5	ATXN7	3	63973893	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	431663	63973893	134048537	579	16105										
ATXN7	0	genome.wustl.edu	37	chr3	63976471	63976471	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attacgtgtttgactccaggTggaatcgacttcgctgcgcc	11	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	63976471	63976471	T	G	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	missense	c.1618	p.W540G	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	130	0	0	92	18	16.36	-	-	-	G	63976471	T	G	63976471	3	3	232	1	0	0	0	0	1	0	0	0	1219	1696	59	5	1720	5	ATXN7	3	63976471	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2578	63976471	134045959	580	16106										
ADAMTS9	0	genome.wustl.edu	37	chr3	64635407	64635407	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagttggacaggcaaagggTagggtctggattcaggttcg	17	6	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	64635407	64635407	T	G	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.1511	p.Y504S	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	116	0	0	82	18	17.65	-	-	-	G	64635407	T	G	64635407	3	3	232	1	0	0	0	0	1	0	0	0	273	1638	57	5	4416	5	ADAMTS9	3	64635407	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	658936	64635407	133387023	581	16107										
MAGI1	0	genome.wustl.edu	37	chr3	65349154	65349154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttaccctcatctttccacAcctctccgcaggaccgtcct	4	19	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	65349154	65349154	A	C	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3481	p.C1161G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	612	0	0	449	78	14.72	-	-	-	C	65349154	A	C	65349154	3	2	232	1	0	0	0	0	1	0	0	0	9261	159	6	5	1062	5	MAGI1	3	65349154	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	713747	65349154	132673276	582	16108										
MAGI1	0	genome.wustl.edu	37	chr3	65415333	65415333	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccttctttcaggcctcggcAccttgggctgtcaacaatct	8	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	65415333	65415333	A	C	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.2029	p.C677G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	170	1	0.58	131	34	20.48	-	-	-	C	65415333	A	C	65415333	3	2	232	1	0	0	0	0	1	0	0	0	9261	159	6	5	2641	5	MAGI1	3	65415333	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	66179	65415333	132607097	583	16109										
KBTBD8	0	genome.wustl.edu	37	chr3	67054597	67054597	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggtcgtgtttatgaaggTgatgggagaaactcactaaa	14	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	67054597	67054597	T	G	SNP	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	silent	c.1206	p.G402	0.891	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	214	1	0.47	159	30	15.87	-	-	-	G	67054597	T	G	67054597	2	3	232	1	0	0	0	0	0	0	0	1	8053	1683	59	5		5	KBTBD8	3	67054597	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1639264	67054597	130967833	584	16110										
TMF1	0	genome.wustl.edu	37	chr3	69084265	69084265	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcaagcctaaggtcccccAcctgtaggaggagaaacaat	10	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	69084265	69084265	A	C	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	missense	c.2162	p.V721G	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	117	0	0	129	32	19.75	-	-	-	C	69084265	A	C	69084265	3	2	232	1	0	0	0	0	1	0	0	0	16323	173	6	5	1164	5	TMF1	3	69084265	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2029668	69084265	128938165	585	16111										
CNTN3	0	genome.wustl.edu	37	chr3	74334641	74334641	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacccccattccagtaccgcAcctggtgggcggaagacacc	10	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	74334641	74334641	A	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.2519	p.V840G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	316	2	0.62	220	39	14.89	-	-	-	C	74334641	A	C	74334641	3	2	232	1	0	0	0	0	1	0	0	0	3672	173	6	5	583	5	CNTN3	3	74334641	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5250376	74334641	123687789	586	16112										
CNTN3	0	genome.wustl.edu	37	chr3	74350638	74350638	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacccgaaattcatattccAcccatgggtttaactcaact	4	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	74350638	74350638	A	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.2006	p.V669G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	172	1	0.58	137	33	19.3	-	-	-	C	74350638	A	C	74350638	3	2	232	1	0	0	0	0	1	0	0	0	3672	159	6	5	1112	5	CNTN3	3	74350638	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15997	74350638	123671792	587	16113										
CNTN3	0	genome.wustl.edu	37	chr3	74535764	74535764	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccatactcatatcaatatcActtccattcagctgccatct	2	14	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	74535764	74535764	A	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.201	p.S67R	0.007	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	345	0	0	224	26	10.4	-	-	-	C	74535764	A	C	74535764	3	2	232	1	0	0	0	0	1	0	0	0	3672	156	6	5	2965	5	CNTN3	3	74535764	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	185126	74535764	123486666	588	16114										
ROBO1	0	genome.wustl.edu	37	chr3	79639000	79639000	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagctgggccagaaacaggTgatttggggataagctgagg	16	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	79639000	79639000	T	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.62	p.H21P	0.002	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	243	0	0	181	33	15.42	-	-	-	G	79639000	T	G	79639000	3	3	232	1	0	0	0	0	1	0	0	0	13599	1696	59	5	5085	5	ROBO1	3	79639000	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5103236	79639000	118383430	589	16115										
HTR1F	0	genome.wustl.edu	37	chr3	88040063	88040063	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattgtgacccggaagctgcAccatccagccaattatttaa	7	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	88040063	88040063	A	C	SNP	HTR1F	ENST00000319595	human	ensembl	69_37n	1	known	missense	c.164	p.H55P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1F	HGNC	ENSG00000179097	173	1	0.57	131	39	22.94	-	-	-	C	88040063	A	C	88040063	3	2	232	1	0	0	0	0	1	0	0	0	7494	159	6	5	166	5	HTR1F	3	88040063	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8401063	88040063	109982367	590	16116										
EPHA3	0	genome.wustl.edu	37	chr3	89390198	89390198	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacttccgggcagacaaagAccctccatccatggcttgta	8	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	89390198	89390198	A	C	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.947	p.D316A	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	289	2	0.68	201	49	19.6	-	-	-	C	89390198	A	C	89390198	3	2	232	1	0	0	0	0	1	0	0	0	5205	275	10	5	961	5	EPHA3	3	89390198	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1350135	89390198	108632232	591	16117										
STX19	0	genome.wustl.edu	37	chr3	93734016	93734016	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taacagcttgctgtagaaacAccccttgttcctctgtttct	6	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	93734016	93734016	A	C	SNP	STX19	ENST00000315099	human	ensembl	69_37n	-1	known	missense	c.98	p.V33G	0.009	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750	156	0	0	170	25	12.82	-	-	-	C	93734016	A	C	93734016	3	2	232	1	0	0	0	0	1	0	0	0	15433	159	6	5	790	5	STX19	3	93734016	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4343818	93734016	104288414	592	16118										
EPHA6	0	genome.wustl.edu	37	chr3	96945244	96945244	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccgagctgaaaaagacccAccttctatggcatgtaccag	8	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	96945244	96945244	A	C	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	1	known	silent	c.1251	p.P417	0.999	superfamily_Growth_fac_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	279	1	0.36	270	36	11.76	-	-	-	C	96945244	A	C	96945244	2	2	232	1	0	0	0	0	0	0	0	1	5208	146	6	5		5	EPHA6	3	96945244	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3211228	96945244	101077186	593	16119										
CRYBG3	0	genome.wustl.edu	37	chr3	97596270	97596270	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatcagtggaggccaaaaggTacaaaatttatcctttagca	8	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	97596270	97596270	T	G	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.388	p.Y130D	1.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	209	0	0	199	31	13.48	-	-	-	G	97596270	T	G	97596270	3	3	232	1	0	0	0	0	1	0	0	0	3943	1638	57	5	390	5	CRYBG3	3	97596270	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	651026	97596270	100426160	594	16120										
CRYBG3	0	genome.wustl.edu	37	chr3	97660030	97660030	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataaagaaccgtgcccagggTgaatatctgacagtcactgg	11	9	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	97660030	97660030	T	G	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	silent	c.2700	p.G900	0.107	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	171	0	0	119	17	12.5	-	-	-	G	97660030	T	G	97660030	2	3	232	1	0	0	0	0	0	0	0	1	3943	1683	59	5		5	CRYBG3	3	97660030	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	63760	97660030	100362400	595	16121										
OR5K4	0	genome.wustl.edu	37	chr3	98073080	98073080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgctatgtggccatatgccAcccactgcagtaccacacca	7	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	98073080	98073080	A	C	SNP	OR5K4	ENST00000354924	human	ensembl	69_37n	1	known	missense	c.383	p.H128P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5K4	HGNC	ENSG00000196098	500	2	0.4	339	57	14.39	-	-	-	C	98073080	A	C	98073080	3	2	232	1	0	0	0	0	1	0	0	0	11242	159	6	5	385	5	OR5K4	3	98073080	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	413050	98073080	99949350	596	16122										
OR5K3	0	genome.wustl.edu	37	chr3	98109909	98109909	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaacccactgcagtaccacAccatgatgtccaagacactc	6	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	98109909	98109909	A	C	SNP	OR5K3	ENST00000383695	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	0.076	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536	424	2	0.47	305	54	15.04	-	-	-	C	98109909	A	C	98109909	3	2	232	1	0	0	0	0	1	0	0	0	11241	159	6	5	402	5	OR5K3	3	98109909	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36829	98109909	99912521	597	16123										
CLDND1	0	genome.wustl.edu	37	chr3	98235929	98235929	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaatgcccgtggcaatggTgggatataagcttcggcaaa	14	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	98235929	98235929	T	G	SNP	CLDND1	ENST00000437922	human	ensembl	69_37n	-1	known	missense	c.577	p.T193P	0.996	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND1	HGNC	ENSG00000080822	222	0	0	196	26	11.66	-	-	-	G	98235929	T	G	98235929	3	3	232	1	0	0	0	0	1	0	0	0	3523	1696	59	5	261	5	CLDND1	3	98235929	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	126020	98235929	99786501	598	16124										
DCBLD2	0	genome.wustl.edu	37	chr3	98519555	98519555	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaactgcttcattcctttccAccaaccttcattgtgacggc	5	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	98519555	98519555	A	C	SNP	DCBLD2	ENST00000326857	human	ensembl	69_37n	-1	known	missense	c.1768	p.W590G	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_LCCL,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019	299	0	0	225	32	12.36	-	-	-	C	98519555	A	C	98519555	3	2	232	1	0	0	0	0	1	0	0	0	4312	159	6	5	609	5	DCBLD2	3	98519555	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	283626	98519555	99502875	599	16125										
GPR128	0	genome.wustl.edu	37	chr3	100378562	100378562	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaattccagaacccaatggTgttataaaaagtccgctgtt	8	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	100378562	100378562	T	G	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	silent	c.1854	p.G618	0.001	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	142	1	0.7	108	18	14.17	-	-	-	G	100378562	T	G	100378562	2	3	232	1	0	0	0	0	0	0	0	1	6691	1683	59	5		5	GPR128	3	100378562	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1859007	100378562	97643868	600	16126										
IMPG2	0	genome.wustl.edu	37	chr3	100964821	100964821	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtgtgtagacactaaatcAcccaaaggactttctgacca	7	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	100964821	100964821	A	C	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	silent	c.1368	p.G456	0.553	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	258	0	0	149	19	11.31	-	-	-	C	100964821	A	C	100964821	2	2	232	1	0	0	0	0	0	0	0	1	7783	146	6	5		5	IMPG2	3	100964821	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	586259	100964821	97057609	601	16127										
CBLB	0	genome.wustl.edu	37	chr3	105422910	105422910	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaggcgaggaggcacgggTggcaggcttagatgtgggat	19	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	105422910	105422910	T	G	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	silent	c.1515	p.P505	0.995	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	114	0	0	86	20	18.69	-	-	-	G	105422910	T	G	105422910	2	3	232	1	0	0	0	0	0	0	0	1	2726	1683	59	5		5	CBLB	3	105422910	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4458089	105422910	92599520	602	16128										
BBX	0	genome.wustl.edu	37	chr3	107447654	107447654	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaatcctggctacaaatggTgtcctaccacaaacaagcct	6	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	107447654	107447654	T	G	SNP	BBX	ENST00000325805	human	ensembl	69_37n	1	known	missense	c.448	p.C150G	1.000	superfamily_HMG_superfamily	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	653	2	0.3	466	54	10.33	-	-	-	G	107447654	T	G	107447654	3	3	232	1	0	0	0	0	1	0	0	0	1347	1696	59	5	458	5	BBX	3	107447654	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2024744	107447654	90574776	603	16129										
MYH15	0	genome.wustl.edu	37	chr3	108117629	108117629	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcgccgctcagccacagccAcctgctccttcagatcactg	8	18	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	108117629	108117629	A	C	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.5048	p.V1683G	0.819	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	293	0	0	225	38	14.34	-	-	-	C	108117629	A	C	108117629	3	2	232	1	0	0	0	0	1	0	0	0	10106	159	6	5	820	5	MYH15	3	108117629	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	669975	108117629	89904801	604	16130										
DZIP3	0	genome.wustl.edu	37	chr3	108409716	108409716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accagaagaattccctggtcAccccagccggcagttgccca	9	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	108409716	108409716	A	C	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.3599	p.H1200P	0.992	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	101	1	0.98	92	18	16.36	-	-	-	C	108409716	A	C	108409716	3	2	232	1	0	0	0	0	1	0	0	0	4900	159	6	5	3721	5	DZIP3	3	108409716	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	292087	108409716	89612714	605	16131										
MORC1	0	genome.wustl.edu	37	chr3	108723681	108723681	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacctgggcattcttcaggcAcccttcagttggttgagctc	10	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	108723681	108723681	A	C	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.2068	p.C690G	0.000	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	715	2	0.28	501	75	13.02	-	-	-	C	108723681	A	C	108723681	3	2	232	1	0	0	0	0	1	0	0	0	9773	159	6	5	922	5	MORC1	3	108723681	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	313965	108723681	89298749	606	16132										
PVRL3	0	genome.wustl.edu	37	chr3	110837624	110837624	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacatattgactgggaaggTgatcttggtgaaatggaatc	13	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	110837624	110837624	T	G	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	1	known	silent	c.624	p.G208	0.918	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	157	0	0	88	21	19.27	-	-	-	G	110837624	T	G	110837624	2	3	232	1	0	0	0	0	0	0	0	1	12924	1683	59	5		5	PVRL3	3	110837624	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2113943	110837624	87184806	607	16133										
CD96	0	genome.wustl.edu	37	chr3	111298154	111298154	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcttccttgaagaggaagcAccctattatgctgcagagca	9	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	111298154	111298154	A	C	SNP	CD96	ENST00000465428	human	ensembl	69_37n	1	putative	silent	c.348	p.A116	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD96	HGNC	ENSG00000153283	74	0	0	39	23	36.51	-	-	-	C	111298154	A	C	111298154	2	2	232	1	0	0	0	0	0	0	0	1	3077	174	6	5		5	CD96	3	111298154	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	460530	111298154	86724276	608	16134										
PHLDB2	0	genome.wustl.edu	37	chr3	111632499	111632499	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctccaccaccatcctccAcctttccgaaagcttccagc	3	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	111632499	111632499	A	C	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.1669	p.T557P	0.699	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	536	4	0.73	453	100	18.05	-	-	-	C	111632499	A	C	111632499	3	2	232	1	0	0	0	0	1	0	0	0	11926	159	6	5	1760	5	PHLDB2	3	111632499	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	334345	111632499	86389931	609	16135										
TAGLN3	0	genome.wustl.edu	37	chr3	111719760	111719760	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacctatggtgtcagaaccAccgacatctttcagacggtg	10	11	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	111719760	111719760	A	C	SNP	TAGLN3	ENST00000273368	human	ensembl	69_37n	1	known	missense	c.322	p.T108P	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Transgelin	-	no_errors	TAGLN3	HGNC	ENSG00000144834	158	0	0	180	31	14.62	-	-	-	C	111719760	A	C	111719760	3	2	232	1	0	0	0	0	1	0	0	0	15632	159	6	5	328	5	TAGLN3	3	111719760	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87261	111719760	86302670	610	16136										
WDR52	0	genome.wustl.edu	37	chr3	113122819	113122819	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctccactttgatcagaccAccttcccaaagcagcatgtt	6	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	113122819	113122819	A	C	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	silent	c.1050	p.G350	0.001	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	323	1	0.31	219	35	13.62	-	-	-	C	113122819	A	C	113122819	2	2	232	1	0	0	0	0	0	0	0	1	17401	146	6	5		5	WDR52	3	113122819	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1403059	113122819	84899611	611	16137										
KIAA2018	0	genome.wustl.edu	37	chr3	113378848	113378848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcactgttgggcatggggTggtgctaggtggctgaagaa	17	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	113378848	113378848	T	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.1681	p.T561P	0.946	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	238	0	0	222	34	13.28	-	-	-	G	113378848	T	G	113378848	3	3	232	1	0	0	0	0	1	0	0	0	8320	1696	59	5	5060	5	KIAA2018	3	113378848	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	256029	113378848	84643582	612	16138										
QTRTD1	0	genome.wustl.edu	37	chr3	113804546	113804546	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggactttaacccgctggTgagaggatgttcctgttact	13	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	113804546	113804546	T	G	SNP	QTRTD1	ENST00000281273	human	ensembl	69_37n	1	known	missense	c.1043	p.V348G	1.000	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_tRNA_ribo_trans	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_tRNA_ribo_trans	-	no_errors	QTRTD1	HGNC	ENSG00000151576	194	0	0	142	28	16.47	-	-	-	G	113804546	T	G	113804546	3	3	232	1	0	0	0	0	1	0	0	0	12969	1696	59	5	1073	5	QTRTD1	3	113804546	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	425698	113804546	84217884	613	16139										
C3orf30	0	genome.wustl.edu	37	chr3	118866293	118866293	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaatgcaaccactatcccAccctacaacccagttgatgc	5	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	118866293	118866293	A	C	SNP	C3orf30	ENST00000460150	human	ensembl	69_37n	1	putative	missense	c.1147	p.T383P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C3orf30	HGNC	ENSG00000163424	247	0	0	213	26	10.88	-	-	-	C	118866293	A	C	118866293	3	2	232	1	0	0	0	0	1	0	0	0	2240	146	6	5	1259	5	C3orf30	3	118866293	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5061747	118866293	79156137	614	16140										
ARHGAP31	0	genome.wustl.edu	37	chr3	119132795	119132795	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggagctctcatcgttgccAcctcctgctctgaagaccag	10	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119132795	119132795	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	silent	c.2019	p.P673	0.325	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	554	4	0.71	367	55	13.03	-	-	-	C	119132795	A	C	119132795	2	2	232	1	0	0	0	0	0	0	0	1	882	146	6	5		5	ARHGAP31	3	119132795	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	266502	119132795	78889635	615	16141			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119133013	119133013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaacctgagcagggcctgcAcccagacctcgccagcctgg	13	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119133013	119133013	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.2237	p.H746P	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	388	3	0.77	234	36	13.28	-	-	-	C	119133013	A	C	119133013	3	2	232	1	0	0	0	0	1	0	0	0	882	159	6	5	2283	5	ARHGAP31	3	119133013	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	218	119133013	78889417	616	16142			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119133490	119133490	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcatggcctggagatggTggagccctgggaggaacccc	16	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119133490	119133490	T	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.2714	p.V905G	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	499	0	0	282	49	14.76	-	-	-	G	119133490	T	G	119133490	3	3	232	1	0	0	0	0	1	0	0	0	882	1696	59	5	2760	5	ARHGAP31	3	119133490	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	477	119133490	78888940	617	16143			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119133956	119133956	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtccacagattaggcaaggTggtgttcctgggccagagag	15	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119133956	119133956	T	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	silent	c.3180	p.G1060	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	478	1	0.21	260	51	16.4	-	-	-	G	119133956	T	G	119133956	2	3	232	1	0	0	0	0	0	0	0	1	882	1683	59	5		5	ARHGAP31	3	119133956	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	466	119133956	78888474	618	16144			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119134105	119134105	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccttcttccctcaacttggAccctgccattcccattgctg	6	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119134105	119134105	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.3329	p.D1110A	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	413	2	0.48	239	38	13.72	-	-	-	C	119134105	A	C	119134105	3	2	232	1	0	0	0	0	1	0	0	0	882	275	10	5	3375	5	ARHGAP31	3	119134105	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	149	119134105	78888325	619	16145			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119134404	119134404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccctcccaagattcagtacAcccagatcccacagcccctg	5	19	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119134404	119134404	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.3628	p.T1210P	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	255	2	0.78	133	20	13.07	-	-	-	C	119134404	A	C	119134404	3	2	232	1	0	0	0	0	1	0	0	0	882	159	6	5	3674	5	ARHGAP31	3	119134404	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	299	119134404	78888026	620	16146			4	34		7	7	2120	N	T_A	8.121599e-08
ARHGAP31	0	genome.wustl.edu	37	chr3	119134914	119134914	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcccctatcagaagtcccAcccagacagtttcccctggc	7	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119134914	119134914	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.4138	p.T1380P	0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	520	5	0.95	298	53	14.97	-	-	-	C	119134914	A	C	119134914	3	2	232	1	0	0	0	0	1	0	0	0	882	159	6	5	4184	5	ARHGAP31	3	119134914	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	510	119134914	78887516	621	16147			4	34		7	7	2120	N	T_A	8.121599e-08
POPDC2	0	genome.wustl.edu	37	chr3	119378821	119378821	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcggttgatgggtgtctcAccctccacagcataggtctg	13	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119378821	119378821	A	C	SNP	POPDC2	ENST00000341124	human	ensembl	69_37n	-1	known	silent	c.450	p.G150	0.789	pfam_Popeye_prot,superfamily_cNMP-bd-like	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577	127	0	0	129	24	15.69	-	-	-	C	119378821	A	C	119378821	2	2	232	1	0	0	0	0	0	0	0	1	12329	146	6	5		5	POPDC2	3	119378821	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	243907	119378821	78643609	622	16148										
GSK3B	0	genome.wustl.edu	37	chr3	119721034	119721034	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttcttgtggcctgtctggAccctgcccaggagttgccac	11	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119721034	119721034	A	C	SNP	GSK3B	ENST00000316626	human	ensembl	69_37n	-1	known	silent	c.141	p.G47	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701	409	3	0.73	266	69	20.35	-	-	-	C	119721034	A	C	119721034	2	2	232	1	0	0	0	0	0	0	0	1	6875	262	10	5		5	GSK3B	3	119721034	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	342213	119721034	78301396	623	16149			5	35	586120	3	3	32	A		4.260685e-06
GSK3B	0	genome.wustl.edu	37	chr3	119721053	119721053	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccctgcccaggagttgccAccactgttgtcaccttgctg	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119721053	119721053	A	C	SNP	GSK3B	ENST00000316626	human	ensembl	69_37n	-1	known	missense	c.122	p.V41G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701	426	1	0.23	290	46	13.69	-	-	-	C	119721053	A	C	119721053	3	2	232	1	0	0	0	0	1	0	0	0	6875	159	6	5	1223	5	GSK3B	3	119721053	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19	119721053	78301377	624	16150			5	35	586120	3	3	32	A		4.260685e-06
GSK3B	0	genome.wustl.edu	37	chr3	119721065	119721065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagttgccaccactgttgtcAccttgctgccgtccttgtct	9	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	119721065	119721065	A	C	SNP	GSK3B	ENST00000316626	human	ensembl	69_37n	-1	known	missense	c.110	p.V37G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701	430	0	0	303	63	17.21	-	-	-	C	119721065	A	C	119721065	3	2	232	1	0	0	0	0	1	0	0	0	6875	159	6	5	1235	5	GSK3B	3	119721065	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12	119721065	78301365	625	16151			5	35	586120	3	3	32	A		4.260685e-06
GTF2E1	0	genome.wustl.edu	37	chr3	120495323	120495323	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagcctagcaggtgggcaccAccgggaagcatgggccacca	14	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	120495323	120495323	A	C	SNP	GTF2E1	ENST00000283875	human	ensembl	69_37n	1	known	missense	c.704	p.H235P	1.000	NULL	pfam_TFIIEa/SarR/Rpc3_HTH_dom,pfam_TFIIE_asu_C,pfam_Znf_TFIIB,smart_TFIIE_asu	-	no_errors	GTF2E1	HGNC	ENSG00000153767	339	0	0	379	44	10.4	-	-	-	C	120495323	A	C	120495323	3	2	232	1	0	0	0	0	1	0	0	0	6907	159	6	5	714	5	GTF2E1	3	120495323	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	774258	120495323	77527107	626	16152										
ARGFX	0	genome.wustl.edu	37	chr3	121305079	121305079	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaattgggcatggaactctAccttcactgagagttctacc	8	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	121305079	121305079	A	C	SNP	ARGFX	ENST00000334384	human	ensembl	69_37n	1	known	missense	c.580	p.T194P	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ARGFX	HGNC	ENSG00000186103	243	0	0	337	48	12.4	-	-	-	C	121305079	A	C	121305079	3	2	232	1	0	0	0	0	1	0	0	0	861	391	14	5	594	5	ARGFX	3	121305079	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	809756	121305079	76717351	627	16153										
GOLGB1	0	genome.wustl.edu	37	chr3	121410178	121410178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttatcttcaatttcacctAccttcttggcagcttccttt	4	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	121410178	121410178	A	C	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.8018	p.V2673G	0.958	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	573	2	0.35	291	38	11.48	-	-	-	C	121410178	A	C	121410178	3	2	232	1	0	0	0	0	1	0	0	0	6614	391	14	5	1797	5	GOLGB1	3	121410178	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	105099	121410178	76612252	628	16154										
GOLGB1	0	genome.wustl.edu	37	chr3	121413970	121413970	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtcttgctcttcagtctcAcctggtatagactgtgttcc	9	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	121413970	121413970	A	C	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	silent	c.5385	p.G1795	0.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	425	3	0.7	339	38	10.05	-	-	-	C	121413970	A	C	121413970	2	2	232	1	0	0	0	0	0	0	0	1	6614	146	6	5		5	GOLGB1	3	121413970	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3792	121413970	76608460	629	16155										
CD86	0	genome.wustl.edu	37	chr3	121825334	121825334	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagacgcggcttttatcttcAcctttctctataggtaaagc	7	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	121825334	121825334	A	C	SNP	CD86	ENST00000478741	human	ensembl	69_37n	1	novel	missense	c.676	p.T226P	0.006	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD86	HGNC	ENSG00000114013	263	2	0.75	237	52	17.93	-	-	-	C	121825334	A	C	121825334	3	2	232	1	0	0	0	0	1	0	0	0	3072	146	6	5	704	5	CD86	3	121825334	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	411364	121825334	76197096	630	16156										
CASR	0	genome.wustl.edu	37	chr3	121981022	121981022	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgagaggtcacgaagaaagTggcgacaggtttagcaacag	14	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	121981022	121981022	T	G	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.1140	p.S380R	0.013	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	178	0	0	150	22	12.79	-	-	-	G	121981022	T	G	121981022	3	3	232	1	0	0	0	0	1	0	0	0	2707	1693	59	5	1150	5	CASR	3	121981022	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	155688	121981022	76041408	631	16157										
PARP9	0	genome.wustl.edu	37	chr3	122255022	122255022	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattgacacctaccgcaaggTgtcgagtacattctttgaaa	8	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	122255022	122255022	T	G	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	silent	c.2178	p.T726	0.058	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	740	2	0.27	665	86	11.41	-	-	-	G	122255022	T	G	122255022	2	3	232	1	0	0	0	0	0	0	0	1	11539	1683	59	5		5	PARP9	3	122255022	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	274000	122255022	75767408	632	16158										
PARP14	0	genome.wustl.edu	37	chr3	122418545	122418545	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggaagaccgagaatcaagAcctggcaggcagatacttcc	11	10	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	122418545	122418545	A	C	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.1144	p.T382P	0.986	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	302	0	0	241	27	10.07	-	-	-	C	122418545	A	C	122418545	3	2	232	1	0	0	0	0	1	0	0	0	11531	275	10	5	1166	5	PARP14	3	122418545	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	163523	122418545	75603885	633	16159										
MYLK	0	genome.wustl.edu	37	chr3	123419403	123419403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcaggttttggcggtggcAccttctcaggcacgggggtc	17	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	123419403	123419403	A	C	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.2912	p.V971G	0.005	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	69	0	0	54	7	11.48	-	-	-	C	123419403	A	C	123419403	3	2	232	1	0	0	0	0	1	0	0	0	10128	159	6	5	2900	5	MYLK	3	123419403	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1000858	123419403	74603027	634	16160										
KALRN	0	genome.wustl.edu	37	chr3	124385449	124385449	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctcaggaagggatccctcAcccctggctacatgttcaaa	9	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	124385449	124385449	A	C	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.6496	p.T2166P	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	56	0	0	56	16	21.92	-	-	-	C	124385449	A	C	124385449	3	2	232	1	0	0	0	0	1	0	0	0	8029	159	6	5	6834	5	KALRN	3	124385449	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	966046	124385449	73636981	635	16161										
HEG1	0	genome.wustl.edu	37	chr3	124732038	124732038	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagagacaccaggcttggTgactttgattctgtaatgac	12	8	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	124732038	124732038	T	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	silent	c.2385	p.S795	0.002	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	142	1	0.69	136	20	12.74	-	-	-	G	124732038	T	G	124732038	2	3	232	1	0	0	0	0	0	0	0	1	7095	1683	59	5		5	HEG1	3	124732038	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	346589	124732038	73290392	636	16162										
ALDH1L1	0	genome.wustl.edu	37	chr3	125879694	125879694	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctccattggctcactcAcccagggggtcggcctttcc	10	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	125879694	125879694	A	C	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	splice_site	c.127+2	e1+2	1.000	-	-	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	46	0	0	39	11	22	-	-	-	C	125879694	A	C	125879694	5	2	232	1	0	0	0	0	0	0	1	0	494	173	6	5	2667	5	ALDH1L1	3	125879694	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1147656	125879694	72142736	637	16163										
ZXDC	0	genome.wustl.edu	37	chr3	126191013	126191013	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacctgtatggctccgcaggTgaattttcagccgacaggct	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	126191013	126191013	T	G	SNP	ZXDC	ENST00000389709	human	ensembl	69_37n	-1	known	missense	c.1043	p.H348P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476	60	0	0	51	20	27.78	-	-	-	G	126191013	T	G	126191013	3	3	232	1	0	0	0	0	1	0	0	0	18343	1696	59	5	1575	5	ZXDC	3	126191013	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	311319	126191013	71831417	638	16164										
TMCC1	0	genome.wustl.edu	37	chr3	129389677	129389677	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccttcactgaagccagtcAcctttgctcctacatccttc	4	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	129389677	129389677	A	C	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1007	p.V336G	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	122	0	0	121	20	14.18	-	-	-	C	129389677	A	C	129389677	3	2	232	1	0	0	0	0	1	0	0	0	16087	159	6	5	966	5	TMCC1	3	129389677	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3198664	129389677	68632753	639	16165										
COL6A6	0	genome.wustl.edu	37	chr3	130287142	130287142	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctcacattggacaaaccAccctgactggtagtgccctg	10	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	130287142	130287142	A	C	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.2095	p.T699P	0.955	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	229	2	0.87	143	36	20	-	-	-	C	130287142	A	C	130287142	3	2	232	1	0	0	0	0	1	0	0	0	3733	159	6	5	2113	5	COL6A6	3	130287142	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	897465	130287142	67735288	640	16166										
NPHP3	0	genome.wustl.edu	37	chr3	132410049	132410049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaataccttagctgcaaggTgaaatagttgattagctttt	8	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	132410049	132410049	T	G	SNP	NPHP3	ENST00000337331	human	ensembl	69_37n	-1	known	missense	c.2557	p.T853P	1.000	NULL	pfam_TPR-1,pfam_TPR-3,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971	224	0	0	236	40	14.49	-	-	-	G	132410049	T	G	132410049	3	3	232	1	0	0	0	0	1	0	0	0	10652	1696	59	5	1475	5	NPHP3	3	132410049	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2122907	132410049	65612381	641	16167										
TMEM108	0	genome.wustl.edu	37	chr3	133098934	133098934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccatggcaaccacatccTccaagccagagggccgccct	9	18	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	133098934	133098934	T	C	SNP	TMEM108	ENST00000321871	human	ensembl	69_37n	1	known	missense	c.379	p.S127P	0.022	NULL	NULL	-	no_errors	TMEM108	HGNC	ENSG00000144868	95	0	0	57	13	18.57	-	-	-	C	133098934	T	C	133098934	3	2	232	1	0	0	0	0	1	0	0	0	16119	1551	54	5	385	5	TMEM108	3	133098934	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	688885	133098934	64923496	642	16168										
BFSP2	0	genome.wustl.edu	37	chr3	133193849	133193849	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctttttcatgaagaaaacAcccttcctcaacagctgacc	4	14	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	133193849	133193849	A	C	SNP	BFSP2	ENST00000510039	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	BFSP2	HGNC	ENSG00000170819	142	1	0.7	108	32	22.86	-	-	-	C	133193849	A	C	133193849	1	2	232	0	1	0	0	0	0	0	0	0	1421	174	6	5		5	BFSP2	3	133193849	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	94915	133193849	64828581	643	16169										
EPHB1	0	genome.wustl.edu	37	chr3	134670535	134670535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatgagagcttctcccaggTggactttgggggaaggctga	16	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	134670535	134670535	T	G	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.446	p.V149G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	381	0	0	299	39	11.37	-	-	-	G	134670535	T	G	134670535	3	3	232	1	0	0	0	0	1	0	0	0	5211	1696	59	5	456	5	EPHB1	3	134670535	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1476686	134670535	63351895	644	16170										
EPHB1	0	genome.wustl.edu	37	chr3	134670610	134670610	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttactcggaatggtttttAcctcgcttttcaggattatg	8	8	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	134670610	134670610	A	C	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.521	p.Y174S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	417	2	0.48	315	36	10.17	-	-	-	C	134670610	A	C	134670610	3	2	232	1	0	0	0	0	1	0	0	0	5211	391	14	5	531	5	EPHB1	3	134670610	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	75	134670610	63351820	645	16171										
EPHB1	0	genome.wustl.edu	37	chr3	134873002	134873002	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctctccacagccccctccAccgttcccatcatgcaccaa	3	22	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	134873002	134873002	A	C	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.1306	p.T436P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	311	3	0.95	311	55	14.95	-	-	-	C	134873002	A	C	134873002	3	2	232	1	0	0	0	0	1	0	0	0	5211	159	6	5	1328	5	EPHB1	3	134873002	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	202392	134873002	63149428	646	16172										
EPHB1	0	genome.wustl.edu	37	chr3	134885850	134885850	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattacagcacaggccgaggTaagtagaaagcagagacccg	12	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	134885850	134885850	T	G	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	splice_site	c.1759+2	e9+2	1.000	-	-	-	no_errors	EPHB1	HGNC	ENSG00000154928	330	3	0.9	201	44	17.81	-	-	-	G	134885850	T	G	134885850	5	3	232	1	0	0	0	0	0	0	1	0	5211	1652	57	5	1795	5	EPHB1	3	134885850	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12848	134885850	63136580	647	16173										
PPP2R3A	0	genome.wustl.edu	37	chr3	135721942	135721942	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagagccacttgcgaagggTaaaaactctaattttttaaa	8	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	135721942	135721942	T	G	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	silent	c.1602	p.G534	0.839	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	262	0	0	177	34	16.04	-	-	-	G	135721942	T	G	135721942	2	3	232	1	0	0	0	0	0	0	0	1	12465	1625	57	5		5	PPP2R3A	3	135721942	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	836092	135721942	62300488	648	16174										
NCK1	0	genome.wustl.edu	37	chr3	136664596	136664596	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgataaaggggacaaaggTgatcgtcatggagaaatgca	13	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	136664596	136664596	T	G	SNP	NCK1	ENST00000467911	human	ensembl	69_37n	1	putative	splice_site	c.204+2	e2+2	1.000	-	-	-	no_stop_codon	NCK1	HGNC	ENSG00000158092	279	2	0.71	213	30	12.3	-	-	-	G	136664596	T	G	136664596	5	3	232	1	0	0	0	0	0	0	1	0	10291	1696	59	5	404	5	NCK1	3	136664596	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	942654	136664596	61357834	649	16175										
NCK1	0	genome.wustl.edu	37	chr3	136664690	136664690	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactatgtaactgaagaaggTgacagtcctttgggtgacca	11	7	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	136664690	136664690	T	G	SNP	NCK1	ENST00000288986	human	ensembl	69_37n	1	known	silent	c.492	p.G164	0.996	superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092	301	1	0.33	272	36	11.69	-	-	-	G	136664690	T	G	136664690	2	3	232	1	0	0	0	0	0	0	0	1	10291	1683	59	5		5	NCK1	3	136664690	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	94	136664690	61357740	650	16176										
DZIP1L	0	genome.wustl.edu	37	chr3	137822747	137822747	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgaggctgaaacttgaaggTggggaacgtgtaggccccaa	16	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	137822747	137822747	T	G	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	missense	c.67	p.T23P	0.004	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	50	0	0	38	10	20.83	-	-	-	G	137822747	T	G	137822747	3	3	232	1	0	0	0	0	1	0	0	0	4899	1696	59	5	2305	5	DZIP1L	3	137822747	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1158057	137822747	60199683	651	16177										
MRAS	0	genome.wustl.edu	37	chr3	138091775	138091775	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctccccacatacaagctggTggtggtgggggatgggggtg	18	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	138091775	138091775	T	G	SNP	MRAS	ENST00000289104	human	ensembl	69_37n	1	known	missense	c.50	p.V17G	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	MRAS	HGNC	ENSG00000158186	91	0	0	68	18	20.69	-	-	-	G	138091775	T	G	138091775	3	3	232	1	0	0	0	0	1	0	0	0	9827	1696	59	5	52	5	MRAS	3	138091775	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	269028	138091775	59930655	652	16178										
SLC25A36	0	genome.wustl.edu	37	chr3	140692582	140692582	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcggggaaaggcgaatgggTgcttttgaatgtgttcgtaa	16	5	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	140692582	140692582	T	G	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	1	known	silent	c.477	p.G159	0.920	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	84	0	0	67	20	22.99	-	-	-	G	140692582	T	G	140692582	2	3	232	1	0	0	0	0	0	0	0	1	14589	1683	59	5		5	SLC25A36	3	140692582	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2600807	140692582	57329848	653	16179										
ZBTB38	0	genome.wustl.edu	37	chr3	141162374	141162374	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgcaacaaacaattcaccAccctgaacaggttggatcgg	8	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	141162374	141162374	A	C	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	missense	c.1147	p.T383P	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	277	2	0.71	241	55	18.58	-	-	-	C	141162374	A	C	141162374	3	2	232	1	0	0	0	0	1	0	0	0	17635	159	6	5	1146	5	ZBTB38	3	141162374	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	469792	141162374	56860056	654	16180										
PAQR9	0	genome.wustl.edu	37	chr3	142681109	142681109	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaccagccccaggcagaccAccagcagcagcatgtagccc	9	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	142681109	142681109	A	C	SNP	PAQR9	ENST00000340634	human	ensembl	69_37n	-1	known	missense	c.1070	p.V357G	0.957	NULL	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582	62	0	0	45	10	17.86	-	-	-	C	142681109	A	C	142681109	3	2	232	1	0	0	0	0	1	0	0	0	11515	159	6	5	67	5	PAQR9	3	142681109	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1518735	142681109	55341321	655	16181										
CP	0	genome.wustl.edu	37	chr3	148895649	148895649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtattggaagctatggccgTgaaaatgtacagtgtgtaag	13	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	148895649	148895649	T	G	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.2996	p.H999P	0.998	pfam_Cu-oxidase_2,pfam_Cu-oxidase,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	286	2	0.69	262	31	10.58	-	-	-	G	148895649	T	G	148895649	3	3	232	1	0	0	0	0	1	0	0	0	3817	1696	59	5	213	5	CP	3	148895649	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6214540	148895649	49126781	656	16182										
P2RY13	0	genome.wustl.edu	37	chr3	151046707	151046707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgtagagggctgggaatAccagctgtactatccgagtg	14	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	151046707	151046707	A	C	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	missense	c.137	p.V46G	0.999	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	217	0	0	209	26	11.02	-	-	-	C	151046707	A	C	151046707	3	2	232	1	0	0	0	0	1	0	0	0	11423	391	14	5	931	5	P2RY13	3	151046707	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2151058	151046707	46975723	657	16183										
IGSF10	0	genome.wustl.edu	37	chr3	151161597	151161597	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccgcggtcctgaatttccAccctctggatggacagggta	12	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	151161597	151161597	A	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.5138	p.V1713G	0.987	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	75	0	0	60	20	25	-	-	-	C	151161597	A	C	151161597	3	2	232	1	0	0	0	0	1	0	0	0	7651	159	6	5	2789	5	IGSF10	3	151161597	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	114890	151161597	46860833	658	16184										
IGSF10	0	genome.wustl.edu	37	chr3	151166299	151166299	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagttcaggccaacggttccAcctaccaagacagtatgttc	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	151166299	151166299	A	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.1470	p.G490	0.994	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	469	2	0.42	391	92	19.01	-	-	-	C	151166299	A	C	151166299	2	2	232	1	0	0	0	0	0	0	0	1	7651	146	6	5		5	IGSF10	3	151166299	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4702	151166299	46856131	659	16185										
GPR149	0	genome.wustl.edu	37	chr3	154055985	154055985	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataggtagaaagagatagggTtttccctgtaggtgcatgga	14	4	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	154055985	154055985	T	G	SNP	GPR149	ENST00000389740	human	ensembl	69_37n	-1	known	missense	c.1699	p.T567P	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR149	HGNC	ENSG00000174948	180	1	0.55	187	21	10.1	-	-	-	G	154055985	T	G	154055985	3	3	232	1	0	0	0	0	1	0	0	0	6704	1725	60	5	500	5	GPR149	3	154055985	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2889686	154055985	43966445	660	16186										
RSRC1	0	genome.wustl.edu	37	chr3	157920910	157920910	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atagtcgtagcagtgaaaggTccagtcacagaagaacgcgt	12	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	157920910	157920910	T	G	SNP	RSRC1	ENST00000295930	human	ensembl	69_37n	1	known	missense	c.370	p.S124A	0.997	NULL	NULL	-	no_errors	RSRC1	HGNC	ENSG00000174891	81	0	0	55	17	23.61	-	-	-	G	157920910	T	G	157920910	3	3	232	1	0	0	0	0	1	0	0	0	13800	1667	58	5	380	5	RSRC1	3	157920910	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3864925	157920910	40101520	661	16187										
SI	0	genome.wustl.edu	37	chr3	164758799	164758799	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacagagtgtagaggaagggTaataaggtgtagcgaatagt	15	2	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	164758799	164758799	T	G	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.2088	p.L696F	0.567	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	283	0	0	197	37	15.81	-	-	-	G	164758799	T	G	164758799	3	3	232	1	0	0	0	0	1	0	0	0	14386	1635	57	5	3519	5	SI	3	164758799	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6837889	164758799	33263631	662	16188										
BCHE	0	genome.wustl.edu	37	chr3	165548295	165548295	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaagaatcctagggcacccAccctatagttcattgacact	6	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	165548295	165548295	A	C	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	missense	c.527	p.V176G	0.670	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	125	1	0.79	105	26	19.85	-	-	-	C	165548295	A	C	165548295	3	2	232	1	0	0	0	0	1	0	0	0	1362	159	6	5	1293	5	BCHE	3	165548295	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	789496	165548295	32474135	663	16189										
SERPINI2	0	genome.wustl.edu	37	chr3	167183401	167183401	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttgaaataaatagcattcAccaggacaagccgagtcaga	8	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	167183401	167183401	A	C	SNP	SERPINI2	ENST00000264677	human	ensembl	69_37n	-1	known	missense	c.539	p.V180G	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204	138	0	0	89	27	23.28	-	-	-	C	167183401	A	C	167183401	3	2	232	1	0	0	0	0	1	0	0	0	14207	159	6	5	702	5	SERPINI2	3	167183401	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1635106	167183401	30839029	664	16190										
GOLIM4	0	genome.wustl.edu	37	chr3	167742833	167742833	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcttcaaattcatcctcAccttgattattagggtcatc	5	11	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	167742833	167742833	A	C	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	silent	c.1674	p.G558	0.217	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	274	0	0	245	48	16.27	-	-	-	C	167742833	A	C	167742833	2	2	232	1	0	0	0	0	0	0	0	1	6615	146	6	5		5	GOLIM4	3	167742833	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	559432	167742833	30279597	665	16191										
MYNN	0	genome.wustl.edu	37	chr3	169500290	169500290	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccatatgtctgtgataggTgtggacagagatttgctcaa	12	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	169500290	169500290	T	G	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	missense	c.1258	p.C420G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	143	0	0	169	35	17.16	-	-	-	G	169500290	T	G	169500290	3	3	232	1	0	0	0	0	1	0	0	0	10133	1696	59	5	1272	5	MYNN	3	169500290	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1757457	169500290	28522140	666	16192										
SEC62	0	genome.wustl.edu	37	chr3	169700701	169700701	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaggaagaatccaaaaaggTgagttaatctaaaattaagt	8	3	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	169700701	169700701	T	G	SNP	SEC62	ENST00000337002	human	ensembl	69_37n	1	known	splice_site	c.456+2	e4+2	1.000	-	-	-	no_errors	SEC62	HGNC	ENSG00000008952	98	0	0	61	18	22.22	-	-	-	G	169700701	T	G	169700701	5	3	232	1	0	0	0	0	0	0	1	0	14092	1710	59	5	472	5	SEC62	3	169700701	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	200411	169700701	28321729	667	16193										
GPR160	0	genome.wustl.edu	37	chr3	169801816	169801816	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtaccagttacgtcaaacaaAccagcccctagatgttaact	6	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	169801816	169801816	A	C	SNP	GPR160	ENST00000355897	human	ensembl	69_37n	1	known	missense	c.56	p.N19T	0.000	NULL	pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR160	HGNC	ENSG00000173890	165	0	0	111	26	18.98	-	-	-	C	169801816	A	C	169801816	3	2	232	1	0	0	0	0	1	0	0	0	6714	43	2	5	58	5	GPR160	3	169801816	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	101115	169801816	28220614	668	16194										
SPATA16	0	genome.wustl.edu	37	chr3	172694806	172694806	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgctctcttcccttcctccAccaagccagaacatgtagtc	5	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	172694806	172694806	A	C	SNP	SPATA16	ENST00000351008	human	ensembl	69_37n	-1	known	silent	c.885	p.G295	0.212	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962	221	1	0.45	205	30	12.77	-	-	-	C	172694806	A	C	172694806	2	2	232	1	0	0	0	0	0	0	0	1	15092	146	6	5		5	SPATA16	3	172694806	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2892990	172694806	25327624	669	16195										
NLGN1	0	genome.wustl.edu	37	chr3	173322453	173322453	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgatggcatgcttggtacAccggggattgggtgccccat	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	173322453	173322453	A	C	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	missense	c.65	p.H22P	0.618	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	196	0	0	187	25	11.79	-	-	-	C	173322453	A	C	173322453	3	2	232	1	0	0	0	0	1	0	0	0	10533	159	6	5	67	5	NLGN1	3	173322453	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	627647	173322453	24699977	670	16196										
KCNMB2	0	genome.wustl.edu	37	chr3	178546070	178546070	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctggaaactttctcagtAcccctgcctccaggtgtacg	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	178546070	178546070	A	C	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	1	known	missense	c.332	p.Y111S	1.000	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	84	0	0	75	21	21.65	-	-	-	C	178546070	A	C	178546070	3	2	232	1	0	0	0	0	1	0	0	0	8129	391	14	5	342	5	KCNMB2	3	178546070	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5223617	178546070	19476360	671	16197										
PIK3CA	0	genome.wustl.edu	37	chr3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttatgtaattttattaaagGttttgctatcggcatgccag	8	5	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	178917478	178917478	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.353	p.G118D	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	103	1	0.96	84	30	26.32	-	-	-	A	178917478	G	A	178917478	3	1	232	1	0	0	0	0	1	0	0	0	11987	1275	44	4	359	4	PIK3CA	3	178917478	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	371408	178917478	19104952	672	16198										
PEX5L	0	genome.wustl.edu	37	chr3	179526208	179526208	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttccagatataattccttcAccccttccagaacagagcta	4	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	179526208	179526208	A	C	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.1370	p.V457G	1.000	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	107	1	0.93	67	15	18.29	-	-	-	C	179526208	A	C	179526208	3	2	232	1	0	0	0	0	1	0	0	0	11823	159	6	5	522	5	PEX5L	3	179526208	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	608730	179526208	18496222	673	16199										
PEX5L	0	genome.wustl.edu	37	chr3	179754421	179754421	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcagggctccctgaggccAccggatgcttttcccccgtg	11	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	179754421	179754421	A	C	SNP	PEX5L	ENST00000474909	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.098	-	-	-	no_errors	PEX5L	HGNC	ENSG00000114757	134	0	0	70	12	14.46	-	-	-	C	179754421	A	C	179754421	1	2	232	0	1	0	0	0	0	0	0	0	11823	174	6	5		5	PEX5L	3	179754421	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	228213	179754421	18268009	674	16200										
MCF2L2	0	genome.wustl.edu	37	chr3	183013094	183013094	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaaataacctacccgaggTggagggctggctggtttttg	13	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	183013094	183013094	T	G	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.1669	p.T557P	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	170	0	0	296	48	13.95	-	-	-	G	183013094	T	G	183013094	3	3	232	1	0	0	0	0	1	0	0	0	9451	1696	59	5	1747	5	MCF2L2	3	183013094	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3258673	183013094	15009336	675	16201										
KLHL6	0	genome.wustl.edu	37	chr3	183226052	183226052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctcatcacggtctcaaacAcctgagcctcctcggtcacg	8	16	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	183226052	183226052	A	C	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	missense	c.704	p.V235G	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	137	0	0	146	26	15.03	-	-	-	C	183226052	A	C	183226052	3	2	232	1	0	0	0	0	1	0	0	0	8446	159	6	5	1181	5	KLHL6	3	183226052	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	212958	183226052	14796378	676	16202										
HTR3D	0	genome.wustl.edu	37	chr3	183756198	183756198	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagacccccttgcctgcaggTgtctacttcgccctgtgcct	9	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	183756198	183756198	T	G	SNP	HTR3D	ENST00000382489	human	ensembl	69_37n	1	known	silent	c.921	p.G307	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	161	0	0	154	26	14.44	-	-	-	G	183756198	T	G	183756198	2	3	232	1	0	0	0	0	0	0	0	1	7501	1710	59	5		5	HTR3D	3	183756198	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	530146	183756198	14266232	677	16203										
EIF2B5	0	genome.wustl.edu	37	chr3	183859753	183859753	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagacctacctgtggcagggTgttcgagtggcggctggagc	17	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	183859753	183859753	T	G	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	silent	c.1197	p.G399	0.648	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	65	0	0	54	15	21.74	-	-	-	G	183859753	T	G	183859753	2	3	232	1	0	0	0	0	0	0	0	1	5039	1683	59	5		5	EIF2B5	3	183859753	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	103555	183859753	14162677	678	16204										
ABCF3	0	genome.wustl.edu	37	chr3	183906772	183906772	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaaaatgcagcagcagcccAcccggtgagtgacccttgcc	10	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	183906772	183906772	A	C	SNP	ABCF3	ENST00000429586	human	ensembl	69_37n	1	known	missense	c.973	p.T325P	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204	89	0	0	120	23	15.86	-	-	-	C	183906772	A	C	183906772	3	2	232	1	0	0	0	0	1	0	0	0	67	159	6	5	1007	5	ABCF3	3	183906772	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47019	183906772	14115658	679	16205										
EIF4G1	0	genome.wustl.edu	37	chr3	184049067	184049067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccagggtcctaaaaaggTggggacgctgtggcgagaag	16	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	184049067	184049067	T	G	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.4196	p.V1399G	1.000	superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	92	0	0	120	35	22.58	-	-	-	G	184049067	T	G	184049067	3	3	232	1	0	0	0	0	1	0	0	0	5073	1696	59	5	4281	5	EIF4G1	3	184049067	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	142295	184049067	13973363	680	16206										
CHRD	0	genome.wustl.edu	37	chr3	184102962	184102962	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaaggcactgtcactgcccAcctccttgggcctcctggaa	9	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	184102962	184102962	A	C	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	1	known	missense	c.1754	p.H585P	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	64	0	0	39	11	21.15	-	-	-	C	184102962	A	C	184102962	3	2	232	1	0	0	0	0	1	0	0	0	3401	159	6	5	1808	5	CHRD	3	184102962	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	53895	184102962	13919468	681	16207										
AHSG	0	genome.wustl.edu	37	chr3	186338544	186338544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctccaggacaccagttgcAccgggcgcactacgacctgc	10	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	186338544	186338544	A	C	SNP	AHSG	ENST00000411641	human	ensembl	69_37n	1	known	missense	c.929	p.H310P	0.016	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192	219	1	0.45	189	33	14.54	-	-	-	C	186338544	A	C	186338544	3	2	232	1	0	0	0	0	1	0	0	0	420	159	6	5	955	5	AHSG	3	186338544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2235582	186338544	11683886	682	16208										
FETUB	0	genome.wustl.edu	37	chr3	186370157	186370157	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccccccaacagactcccccTccaaagctgggccaagagga	8	19	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	186370157	186370157	T	C	SNP	FETUB	ENST00000265029	human	ensembl	69_37n	1	known	missense	c.886	p.S296P	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512	538	2	0.37	393	56	12.42	-	-	-	C	186370157	T	C	186370157	3	2	232	1	0	0	0	0	1	0	0	0	5867	1551	54	5	912	5	FETUB	3	186370157	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	31613	186370157	11652273	683	16209										
FETUB	0	genome.wustl.edu	37	chr3	186370283	186370283	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacgaatccccagggagaaAccctggatatttccttcctc	7	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	186370283	186370283	A	C	SNP	FETUB	ENST00000265029	human	ensembl	69_37n	1	known	missense	c.1012	p.T338P	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512	377	3	0.79	213	32	13.01	-	-	-	C	186370283	A	C	186370283	3	2	232	1	0	0	0	0	1	0	0	0	5867	43	2	5	1038	5	FETUB	3	186370283	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	126	186370283	11652147	684	16210										
LPP	0	genome.wustl.edu	37	chr3	188202462	188202462	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaactttcctcctccaccAcctcttgatgaagaggcttt	7	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	188202462	188202462	A	C	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	silent	c.276	p.P92	0.295	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	201	1	0.5	163	29	15.03	-	-	-	C	188202462	A	C	188202462	2	2	232	1	0	0	0	0	0	0	0	1	8989	146	6	5		5	LPP	3	188202462	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1832179	188202462	9819968	685	16211										
CLDN1	0	genome.wustl.edu	37	chr3	190030795	190030795	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcccaggaggatgccaaccAccatcaaggcacgggttgct	11	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	190030795	190030795	A	C	SNP	CLDN1	ENST00000295522	human	ensembl	69_37n	-1	known	missense	c.254	p.V85G	0.999	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347	293	1	0.34	225	25	10	-	-	-	C	190030795	A	C	190030795	3	2	232	1	0	0	0	0	1	0	0	0	3501	159	6	5	393	5	CLDN1	3	190030795	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1828333	190030795	7991635	686	16212										
LRRC15	0	genome.wustl.edu	37	chr3	194080541	194080541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcacacagtttccccaggTgatcgaagatgccgaggggc	13	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	194080541	194080541	T	G	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.1250	p.H417P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	34	0	0	28	9	24.32	-	-	-	G	194080541	T	G	194080541	3	3	232	1	0	0	0	0	1	0	0	0	9036	1696	59	5	517	5	LRRC15	3	194080541	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4049746	194080541	3941889	687	16213										
GP5	0	genome.wustl.edu	37	chr3	194118254	194118254	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaggggagaaacgcaaggTggtttctcgaaagcgtcaaa	14	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	194118254	194118254	T	G	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	missense	c.758	p.H253P	0.011	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	92	0	0	46	16	25	-	-	-	G	194118254	T	G	194118254	3	3	232	1	0	0	0	0	1	0	0	0	6633	1696	59	5	928	5	GP5	3	194118254	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	37713	194118254	3904176	688	16214										
DLG1	0	genome.wustl.edu	37	chr3	196863524	196863524	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaatatgctgatttccaacAcctccagcaatgctaaaccc	6	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	3	196863524	196863524	A	C	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	silent	c.1008	p.G336	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	243	0	0	206	43	17.2	-	-	-	C	196863524	A	C	196863524	2	2	232	1	0	0	0	0	0	0	0	1	4590	146	6	5		5	DLG1	3	196863524	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2745270	196863524	1158906	689	16215										
PIGG	0	genome.wustl.edu	37	chr4	517272	517272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgcatcccagctcaaggTggtcagagctagaccttctt	9	13	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	517272	517272	T	G	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.1639	p.W547G	0.977	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	184	0	0	183	27	12.86	-	-	-	G	517272	T	G	517272	3	3	232	1	0	0	0	0	1	0	0	0	11962	1696	59	5	1673	5	PIGG	4	517272	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		517272	190637004	690	16216										
FAM193A	0	genome.wustl.edu	37	chr4	2701825	2701825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagactccaaatttctccTccccaaggaggtgaatggga	10	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	2701825	2701825	T	C	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	missense	c.3053	p.L1018P	0.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	228	2	0.87	204	34	14.11	-	-	-	C	2701825	T	C	2701825	3	2	232	1	0	0	0	0	1	0	0	0	5566	1551	54	5	3111	5	FAM193A	4	2701825	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2184553	2701825	188452451	691	16217										
TNIP2	0	genome.wustl.edu	37	chr4	2749581	2749581	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctcctccgtagcaggacgActtccttctctcgctcgtgt	9	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	2749581	2749581	A	C	SNP	TNIP2	ENST00000315423	human	ensembl	69_37n	-1	known	missense	c.368	p.V123G	0.021	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884	53	0	0	33	4	10.53	-	-	-	C	2749581	A	C	2749581	3	2	232	1	0	0	0	0	1	0	0	0	16410	275	10	5	941	5	TNIP2	4	2749581	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47756	2749581	188404695	692	16218										
ADD1	0	genome.wustl.edu	37	chr4	2929942	2929942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatgacagtgatgctgccAcctttaagccaactctcccc	8	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	2929942	2929942	A	C	SNP	ADD1	ENST00000264758	human	ensembl	69_37n	1	known	missense	c.1999	p.T667P	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	186	1	0.53	131	27	17.09	-	-	-	C	2929942	A	C	2929942	3	2	232	1	0	0	0	0	1	0	0	0	304	159	6	5	2091	5	ADD1	4	2929942	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	180361	2929942	188224334	693	16219										
NOP14	0	genome.wustl.edu	37	chr4	2951857	2951857	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctccccgcctgaactgtcAccttcttcctcgttgctctc	5	19	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	2951857	2951857	A	C	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	silent	c.1086	p.G362	0.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	134	0	0	133	30	18.4	-	-	-	C	2951857	A	C	2951857	2	2	232	1	0	0	0	0	0	0	0	1	10608	146	6	5		5	NOP14	4	2951857	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21915	2951857	188202419	694	16220										
GRPEL1	0	genome.wustl.edu	37	chr4	7062611	7062611	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcttccttcaccacccccAccagggcgggtctcagagtg	10	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	7062611	7062611	A	C	SNP	GRPEL1	ENST00000264954	human	ensembl	69_37n	-1	known	missense	c.632	p.V211G	1.000	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL1	HGNC	ENSG00000109519	136	1	0.72	180	20	10	-	-	-	C	7062611	A	C	7062611	3	2	232	1	0	0	0	0	1	0	0	0	6857	159	6	5	25	5	GRPEL1	4	7062611	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4110754	7062611	184091665	695	16221										
GRPEL1	0	genome.wustl.edu	37	chr4	7064132	7064132	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtataattttgcctcctccAccaatttctggctcctctgc	5	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	7064132	7064132	A	C	SNP	GRPEL1	ENST00000264954	human	ensembl	69_37n	-1	known	missense	c.287	p.V96G	1.000	pfam_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL1	HGNC	ENSG00000109519	58	0	0	82	26	24.07	-	-	-	C	7064132	A	C	7064132	3	2	232	1	0	0	0	0	1	0	0	0	6857	159	6	5	374	5	GRPEL1	4	7064132	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1521	7064132	184090144	696	16222										
BST1	0	genome.wustl.edu	37	chr4	15709185	15709185	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaacagctttgcagacaacAcccgtcgttttatgcccctg	7	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	15709185	15709185	A	C	SNP	BST1	ENST00000265016	human	ensembl	69_37n	1	known	missense	c.367	p.T123P	0.000	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	BST1	HGNC	ENSG00000109743	302	1	0.33	182	24	11.59	-	-	-	C	15709185	A	C	15709185	3	2	232	1	0	0	0	0	1	0	0	0	1541	159	6	5	377	5	BST1	4	15709185	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8645053	15709185	175445091	697	16223										
SLIT2	0	genome.wustl.edu	37	chr4	20598062	20598062	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttctgtgagttttctccAcccatggtcctccctcgtac	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	20598062	20598062	A	C	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	silent	c.3345	p.P1115	0.002	NULL	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	159	0	0	156	36	18.65	-	-	-	C	20598062	A	C	20598062	2	2	232	1	0	0	0	0	0	0	0	1	14829	146	6	5		5	SLIT2	4	20598062	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4888877	20598062	170556214	698	16224										
GPR125	0	genome.wustl.edu	37	chr4	22389592	22389592	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgctgctgtcttgctggggTgggttgtactgtctctctct	13	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	22389592	22389592	T	G	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	silent	c.3702	p.P1234	0.768	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	215	0	0	200	31	13.3	-	-	-	G	22389592	T	G	22389592	2	3	232	1	0	0	0	0	0	0	0	1	6689	1683	59	5		5	GPR125	4	22389592	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1791530	22389592	168764684	699	16225										
GPR125	0	genome.wustl.edu	37	chr4	22425848	22425848	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagctccaccggctagccggTaggtagcaatgcgctgaaga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	22425848	22425848	T	G	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.1571	p.Y524S	0.996	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	156	1	0.63	136	38	21.84	-	-	-	G	22425848	T	G	22425848	3	3	232	1	0	0	0	0	1	0	0	0	6689	1638	57	5	2430	5	GPR125	4	22425848	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	36256	22425848	168728428	700	16226	173	2								
GPR125	0	genome.wustl.edu	37	chr4	22425852	22425852	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaccggctagccggtaggTagcaatgcgctgaagacact							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	22425852	22425852	T	G	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.1567	p.T523P	0.007	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	159	1	0.62	129	38	22.75	-	-	-	G	22425852	T	G	22425852	3	3	232	1	0	0	0	0	1	0	0	0	6689	1638	57	5	2434	5	GPR125	4	22425852	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4	22425852	168728424	701	16227	173	2								
GPR125	0	genome.wustl.edu	37	chr4	22446697	22446697	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgtgatgttcttctcctttAcccagcgatgcatccacagt	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	22446697	22446697	A	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.605	p.V202G	0.998	smart_Cys-rich_flank_reg_C	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	92	0	0	76	19	19.79	-	-	-	C	22446697	A	C	22446697	3	2	232	1	0	0	0	0	1	0	0	0	6689	391	14	5	3416	5	GPR125	4	22446697	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20845	22446697	168707579	702	16228										
PPARGC1A	0	genome.wustl.edu	37	chr4	23833215	23833215	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctcctggggtggaggggTgccgtcaggcatggaggaag	20	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	23833215	23833215	T	G	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	missense	c.394	p.T132P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	349	3	0.85	309	65	17.24	-	-	-	G	23833215	T	G	23833215	3	3	232	1	0	0	0	0	1	0	0	0	12373	1696	59	5	2046	5	PPARGC1A	4	23833215	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1386518	23833215	167321061	703	16229										
CCKAR	0	genome.wustl.edu	37	chr4	26483742	26483742	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggtcttttgcaggtaacAcccatcgctgtcctcatatt	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	26483742	26483742	A	C	SNP	CCKAR	ENST00000295589	human	ensembl	69_37n	-1	known	missense	c.805	p.C269G	0.995	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Cholcskin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394	109	0	0	57	18	23.68	-	-	-	C	26483742	A	C	26483742	3	2	232	1	0	0	0	0	1	0	0	0	2907	159	6	5	485	5	CCKAR	4	26483742	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2650527	26483742	164670534	704	16230										
PCDH7	0	genome.wustl.edu	37	chr4	30725306	30725306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atttcctacactttactgccAccttcgagtaatgtcaggac	6	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	30725306	30725306	A	C	SNP	PCDH7	ENST00000511884	human	ensembl	69_37n	1	putative	missense	c.1330	p.T444P	0.997	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Protocadherin,pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PCDH7	HGNC	ENSG00000169851	105	0	0	36	13	26.53	-	-	-	C	30725306	A	C	30725306	3	2	232	1	0	0	0	0	1	0	0	0	11589	146	6	5	2264	5	PCDH7	4	30725306	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4241564	30725306	160428970	705	16231										
PGM2	0	genome.wustl.edu	37	chr4	37846008	37846008	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgaacagggagacaaaggTgaagtttgtgcacacctctg	13	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	37846008	37846008	T	G	SNP	PGM2	ENST00000381967	human	ensembl	69_37n	1	known	missense	c.743	p.V248G	0.991	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299	133	0	0	109	27	19.57	-	-	-	G	37846008	T	G	37846008	3	3	232	1	0	0	0	0	1	0	0	0	11872	1696	59	5	769	5	PGM2	4	37846008	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7120702	37846008	153308268	706	16232										
TBC1D1	0	genome.wustl.edu	37	chr4	37903793	37903793	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggattttggcctgcagctggTgggctccctgcctgtgcatt	14	11	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	37903793	37903793	T	G	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	missense	c.77	p.V26G	1.000	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	167	0	0	152	23	12.99	-	-	-	G	37903793	T	G	37903793	3	3	232	1	0	0	0	0	1	0	0	0	15689	1696	59	5	79	5	TBC1D1	4	37903793	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	57785	37903793	153250483	707	16233										
PTTG2	0	genome.wustl.edu	37	chr4	37962571	37962571	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgtgaaaatgccctctccAccatgggaatgcaatctgtt	8	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	37962571	37962571	A	C	SNP	PTTG2	ENST00000504686	human	ensembl	69_37n	1	known	silent	c.516	p.P172	0.000	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG2	HGNC	ENSG00000250254	328	1	0.3	354	41	10.35	-	-	-	C	37962571	A	C	37962571	2	2	232	1	0	0	0	0	0	0	0	1	12904	146	6	5		5	PTTG2	4	37962571	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	58778	37962571	153191705	708	16234										
TBC1D1	0	genome.wustl.edu	37	chr4	38104674	38104674	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atttctagctgagcaattccAccttaaacaccagtttccca	4	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	38104674	38104674	A	C	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	missense	c.2453	p.H818P	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	321	0	0	326	37	10.14	-	-	-	C	38104674	A	C	38104674	3	2	232	1	0	0	0	0	1	0	0	0	15689	159	6	5	2507	5	TBC1D1	4	38104674	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	142103	38104674	153049602	709	16235										
FAM114A1	0	genome.wustl.edu	37	chr4	38879879	38879879	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaatgcagctgtgcagggTgcaggggctgccgccattgg	17	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	38879879	38879879	T	G	SNP	FAM114A1	ENST00000358869	human	ensembl	69_37n	1	known	silent	c.180	p.G60	0.004	NULL	pfam_DUF719	-	no_errors	FAM114A1	HGNC	ENSG00000197712	31	0	0	54	13	19.12	-	-	-	G	38879879	T	G	38879879	2	3	232	1	0	0	0	0	0	0	0	1	5443	1683	59	5		5	FAM114A1	4	38879879	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	775205	38879879	152274397	710	16236										
PDS5A	0	genome.wustl.edu	37	chr4	39871074	39871074	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagttttccattcttttcAcctgttgactatagacaatt	4	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	39871074	39871074	A	C	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	silent	c.2445	p.G815	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	216	0	0	203	39	16.12	-	-	-	C	39871074	A	C	39871074	2	2	232	1	0	0	0	0	0	0	0	1	11764	146	6	5		5	PDS5A	4	39871074	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	991195	39871074	151283202	711	16237										
SLAIN2	0	genome.wustl.edu	37	chr4	48384856	48384856	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatatagtagagtgtccccAcagcctatgattagccgctt	9	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	48384856	48384856	A	C	SNP	SLAIN2	ENST00000264313	human	ensembl	69_37n	1	known	silent	c.1134	p.P378	0.992	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171	77	0	0	116	17	12.78	-	-	-	C	48384856	A	C	48384856	2	2	232	1	0	0	0	0	0	0	0	1	14455	146	6	5		5	SLAIN2	4	48384856	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8513782	48384856	142769420	712	16238										
CWH43	0	genome.wustl.edu	37	chr4	49032933	49032933	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctaggggaaaagttgggTttctatacagactttggtcc	13	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	49032933	49032933	T	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	silent	c.1464	p.G488	0.975	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	244	1	0.41	189	31	14.09	-	-	-	G	49032933	T	G	49032933	2	3	232	1	0	0	0	0	0	0	0	1	4104	1712	60	5		5	CWH43	4	49032933	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	648077	49032933	142121343	713	16239										
REST	0	genome.wustl.edu	37	chr4	57797237	57797237	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagctgtctcctcccatggAggtggtccagaaggagcctg	15	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	57797237	57797237	A	G	SNP	REST	ENST00000309042	human	ensembl	69_37n	1	known	missense	c.2213	p.E738G	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093	311	1	0.32	410	52	11.23	-	-	-	G	57797237	A	G	57797237	3	3	232	1	0	0	0	0	1	0	0	0	13317	304	11	5	2223	5	REST	4	57797237	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8764304	57797237	133357039	714	16240										
POLR2B	0	genome.wustl.edu	37	chr4	57891078	57891078	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctaacaagggtgaaattggTgatgccactccatttaatga	10	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	57891078	57891078	T	G	SNP	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	silent	c.2991	p.G997	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	221	0	0	141	35	19.89	-	-	-	G	57891078	T	G	57891078	2	3	232	1	0	0	0	0	0	0	0	1	12289	1683	59	5		5	POLR2B	4	57891078	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	93841	57891078	133263198	715	16241										
EPHA5	0	genome.wustl.edu	37	chr4	66356345	66356345	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgacacgtctttccttccAccagtgtcagcaggcggaat	9	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	66356345	66356345	A	C	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	silent	c.1152	p.G384	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	78	0	0	75	15	16.67	-	-	-	C	66356345	A	C	66356345	2	2	232	1	0	0	0	0	0	0	0	1	5207	146	6	5		5	EPHA5	4	66356345	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8465267	66356345	124797931	716	16242										
UGT2B15	0	genome.wustl.edu	37	chr4	69533779	69533779	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaggcaggggtttggctggTttacagtgaagtcctccaac	13	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	69533779	69533779	T	G	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	missense	c.852	p.K284N	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	528	0	0	354	46	11.47	-	-	-	G	69533779	T	G	69533779	3	3	232	1	0	0	0	0	1	0	0	0	17055	1722	60	5	2377	5	UGT2B15	4	69533779	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3177434	69533779	121620497	717	16243										
UGT2B7	0	genome.wustl.edu	37	chr4	69973902	69973902	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaccatgggatccctatggTggggattccattgtttgccg	12	10	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	69973902	69973902	T	G	SNP	UGT2B7	ENST00000305231	human	ensembl	69_37n	1	known	missense	c.1172	p.V391G	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234	215	0	0	214	38	15.08	-	-	-	G	69973902	T	G	69973902	3	3	232	1	0	0	0	0	1	0	0	0	17059	1696	59	5	1190	5	UGT2B7	4	69973902	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	440123	69973902	121180374	718	16244										
UGT2B11	0	genome.wustl.edu	37	chr4	70078319	70078319	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggtttggcaggtttgcagTggaatcctccaacaaaatca	12	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	70078319	70078319	T	G	SNP	UGT2B11	ENST00000446444	human	ensembl	69_37n	-1	known	missense	c.842	p.H281P	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B11	HGNC	ENSG00000213759	310	0	0	228	30	11.63	-	-	-	G	70078319	T	G	70078319	3	3	232	1	0	0	0	0	1	0	0	0	17054	1696	59	5	767	5	UGT2B11	4	70078319	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	104417	70078319	121075957	719	16245										
UGT2B28	0	genome.wustl.edu	37	chr4	70146295	70146295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgggagttgtggaaaggTgctggtgtggaccggtgaat	18	5	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	70146295	70146295	T	G	SNP	UGT2B28	ENST00000335568	human	ensembl	69_37n	1	known	missense	c.77	p.V26G	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226	461	2	0.43	369	45	10.84	-	-	-	G	70146295	T	G	70146295	3	3	232	1	0	0	0	0	1	0	0	0	17057	1696	59	5	79	5	UGT2B28	4	70146295	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	67976	70146295	121007981	720	16246										
UGT2B4	0	genome.wustl.edu	37	chr4	70346230	70346230	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaattttgacttgacaaggTaagttttgaaagatgttttg	9	3	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	70346230	70346230	T	G	SNP	UGT2B4	ENST00000506580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UGT2B4	HGNC	ENSG00000156096	85	0	0	57	11	16.18	-	-	-	G	70346230	T	G	70346230	1	3	232	0	1	0	0	0	0	0	0	0	17058	1653	57	5		5	UGT2B4	4	70346230	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	199935	70346230	120808046	721	16247										
ODAM	0	genome.wustl.edu	37	chr4	71063772	71063772	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggactgctcccaaatcagatAcccttaacaggagaggccag	10	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71063772	71063772	A	C	SNP	ODAM	ENST00000396094	human	ensembl	69_37n	1	known	silent	c.273	p.I91	0.042	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205	385	3	0.77	297	43	12.61	-	-	-	C	71063772	A	C	71063772	2	2	232	1	0	0	0	0	0	0	0	1	10897	381	14	5		5	ODAM	4	71063772	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	717542	71063772	120090504	722	16248										
SMR3A	0	genome.wustl.edu	37	chr4	71232636	71232636	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccaccttcccaaccaagAccctatccacctggacctcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71232636	71232636	A	C	SNP	SMR3A	ENST00000226460	human	ensembl	69_37n	1	known	missense	c.330	p.R110S	0.000	NULL	NULL	-	no_errors	SMR3A	HGNC	ENSG00000109208	360	1	0.28	330	49	12.93	-	-	-	C	71232636	A	C	71232636	3	2	232	1	0	0	0	0	1	0	0	0	14900	272	10	5	336	5	SMR3A	4	71232636	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	168864	71232636	119921640	723	16249	174	2								
SMR3A	0	genome.wustl.edu	37	chr4	71232645	71232645	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccaaccaagaccctatccAcctggacctccatttttccc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71232645	71232645	A	C	SNP	SMR3A	ENST00000226460	human	ensembl	69_37n	1	known	silent	c.339	p.P113	0.001	NULL	NULL	-	no_errors	SMR3A	HGNC	ENSG00000109208	337	2	0.58	282	64	18.39	-	-	-	C	71232645	A	C	71232645	2	2	232	1	0	0	0	0	0	0	0	1	14900	146	6	5		5	SMR3A	4	71232645	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	71232645	119921631	724	16250	174	2								
SMR3A	0	genome.wustl.edu	37	chr4	71232705	71232705	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgccctccctactcctgcAccctaaatacagacaactgc	4	19	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71232705	71232705	A	C	SNP	SMR3A	ENST00000226460	human	ensembl	69_37n	1	known	silent	c.399	p.A133	0.014	NULL	NULL	-	no_errors	SMR3A	HGNC	ENSG00000109208	230	1	0.43	198	35	14.96	-	-	-	C	71232705	A	C	71232705	2	2	232	1	0	0	0	0	0	0	0	1	14900	146	6	5		5	SMR3A	4	71232705	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	60	71232705	119921571	725	16251										
MUC7	0	genome.wustl.edu	37	chr4	71346686	71346686	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctgtaggcctaagcttccAccttcacctaataacccccc	5	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71346686	71346686	A	C	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	silent	c.225	p.P75	0.001	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	469	1	0.21	412	57	12.1	-	-	-	C	71346686	A	C	71346686	2	2	232	1	0	0	0	0	0	0	0	1	10053	146	6	5		5	MUC7	4	71346686	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	113981	71346686	119807590	726	16252										
AMBN	0	genome.wustl.edu	37	chr4	71467240	71467240	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccagtctgctgctgcaaccAccaaccaggccacagcactg	8	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71467240	71467240	A	C	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	0.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	315	2	0.63	257	41	13.76	-	-	-	C	71467240	A	C	71467240	3	2	232	1	0	0	0	0	1	0	0	0	563	159	6	5	422	5	AMBN	4	71467240	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	120554	71467240	119687036	727	16253										
AMBN	0	genome.wustl.edu	37	chr4	71467286	71467286	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcacttcagcctccaattcAcctgggacatctgcccttgc	7	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71467286	71467286	A	C	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.446	p.H149P	0.062	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	225	1	0.44	183	45	19.65	-	-	-	C	71467286	A	C	71467286	3	2	232	1	0	0	0	0	1	0	0	0	563	159	6	5	468	5	AMBN	4	71467286	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	71467286	119686990	728	16254										
ENAM	0	genome.wustl.edu	37	chr4	71500213	71500213	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagactcagtcaaaaaagccAccacaaaagcggcctttgaa	7	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71500213	71500213	A	C	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	silent	c.399	p.P133	0.022	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	175	0	0	219	30	12	-	-	-	C	71500213	A	C	71500213	2	2	232	1	0	0	0	0	0	0	0	1	5149	146	6	5		5	ENAM	4	71500213	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32927	71500213	119654063	729	16255										
ENAM	0	genome.wustl.edu	37	chr4	71501557	71501557	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttctctctaggcattcccAccatttggaaatgggctatt	7	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71501557	71501557	A	C	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	silent	c.480	p.P160	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	211	2	0.94	172	35	16.91	-	-	-	C	71501557	A	C	71501557	2	2	232	1	0	0	0	0	0	0	0	1	5149	146	6	5		5	ENAM	4	71501557	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1344	71501557	119652719	730	16256										
ENAM	0	genome.wustl.edu	37	chr4	71501593	71501593	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctattcccctatcaacaaccAccatggcaaattccacaggt	4	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	71501593	71501593	A	C	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	silent	c.516	p.P172	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	239	2	0.83	187	34	15.25	-	-	-	C	71501593	A	C	71501593	2	2	232	1	0	0	0	0	0	0	0	1	5149	146	6	5		5	ENAM	4	71501593	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36	71501593	119652683	731	16257										
ADAMTS3	0	genome.wustl.edu	37	chr4	73414352	73414352	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatcggttatattcccaggcAccagagatgtctcatgccac	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	73414352	73414352	A	C	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.347	p.V116G	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	245	0	0	154	19	10.92	-	-	-	C	73414352	A	C	73414352	3	2	232	1	0	0	0	0	1	0	0	0	267	159	6	5	3350	5	ADAMTS3	4	73414352	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1912759	73414352	117739924	732	16258										
ANKRD17	0	genome.wustl.edu	37	chr4	73984504	73984504	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaaccacatcgaggtgtccAccatttgctgctagccacaa	8	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	73984504	73984504	A	C	SNP	ANKRD17	ENST00000558247	human	ensembl	69_37n	-1	known	missense	c.3740	p.V1247G	0.968	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKRD17	HGNC	ENSG00000132466	344	1	0.29	240	36	13.04	-	-	-	C	73984504	A	C	73984504	3	2	232	1	0	0	0	0	1	0	0	0	646	146	6	5	3774	5	ANKRD17	4	73984504	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	570152	73984504	117169772	733	16259										
CXCL6	0	genome.wustl.edu	37	chr4	74702804	74702804	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcccgcagtgctccaaggTggaagtggtgtaagttctcc	14	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	74702804	74702804	T	G	SNP	CXCL6	ENST00000226317	human	ensembl	69_37n	1	known	missense	c.233	p.V78G	0.815	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	CXCL6	HGNC	ENSG00000124875	119	1	0.83	83	16	16	-	-	-	G	74702804	T	G	74702804	3	3	232	1	0	0	0	0	1	0	0	0	4119	1696	59	5	239	5	CXCL6	4	74702804	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	718300	74702804	116451472	734	16260										
PARM1	0	genome.wustl.edu	37	chr4	75938141	75938141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atagctccactgtgaccagcAcccaacccactggagctcca	7	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	75938141	75938141	A	C	SNP	PARM1	ENST00000307428	human	ensembl	69_37n	1	known	missense	c.550	p.T184P	0.031	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116	961	5	0.52	724	88	10.84	-	-	-	C	75938141	A	C	75938141	3	2	232	1	0	0	0	0	1	0	0	0	11525	159	6	5	556	5	PARM1	4	75938141	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1235337	75938141	115216135	735	16261			6	36		4	4	172	A		7.115179e-07
PARM1	0	genome.wustl.edu	37	chr4	75938167	75938167	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccactggagctccaactgcAccagagtccccgacagagga	10	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	75938167	75938167	A	C	SNP	PARM1	ENST00000307428	human	ensembl	69_37n	1	known	silent	c.576	p.A192	0.032	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116	875	6	0.68	664	77	10.32	-	-	-	C	75938167	A	C	75938167	2	2	232	1	0	0	0	0	0	0	0	1	11525	146	6	5		5	PARM1	4	75938167	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26	75938167	115216109	736	16262			6	36		4	4	172	A		7.115179e-07
PARM1	0	genome.wustl.edu	37	chr4	75938251	75938251	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtaccccaggagaaaacAcccccaacaactgtgtcagg	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	75938251	75938251	A	C	SNP	PARM1	ENST00000307428	human	ensembl	69_37n	1	known	silent	c.660	p.T220	0.000	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116	596	6	1	395	83	17.26	-	-	-	C	75938251	A	C	75938251	2	2	232	1	0	0	0	0	0	0	0	1	11525	146	6	5		5	PARM1	4	75938251	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	84	75938251	115216025	737	16263			6	36		4	4	172	A		7.115179e-07
PARM1	0	genome.wustl.edu	37	chr4	75938312	75938312	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagacatggagaccaccaccAcctttcccagggtgatcatg	9	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	75938312	75938312	A	C	SNP	PARM1	ENST00000307428	human	ensembl	69_37n	1	known	missense	c.721	p.T241P	0.000	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116	451	1	0.22	298	63	17.4	-	-	-	C	75938312	A	C	75938312	3	2	232	1	0	0	0	0	1	0	0	0	11525	159	6	5	727	5	PARM1	4	75938312	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61	75938312	115215964	738	16264			6	36		4	4	172	A		7.115179e-07
CCDC158	0	genome.wustl.edu	37	chr4	77276580	77276580	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttttgcatccccattgccActttcatagctggaaaaaaa	6	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	77276580	77276580	A	C	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	missense	c.2183	p.V728G	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	240	0	0	210	31	12.81	-	-	-	C	77276580	A	C	77276580	3	2	232	1	0	0	0	0	1	0	0	0	2816	159	6	5	1202	5	CCDC158	4	77276580	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1338268	77276580	113877696	739	16265										
FRAS1	0	genome.wustl.edu	37	chr4	79173629	79173629	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaccccccaaccatgcccAccgctgtcatgtggacacca	7	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	79173629	79173629	A	C	SNP	FRAS1	ENST00000502446	human	ensembl	69_37n	1	putative	missense	c.179	p.H60P	0.024	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,superfamily_Growth_fac_rcpt,smart_VWF_C,smart_VWC_out,smart_Furin_repeat,pfscan_VWF_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	123	1	0.81	58	21	26.58	-	-	-	C	79173629	A	C	79173629	3	2	232	1	0	0	0	0	1	0	0	0	6090	146	6	5	411	5	FRAS1	4	79173629	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1897049	79173629	111980647	740	16266										
FRAS1	0	genome.wustl.edu	37	chr4	79343117	79343117	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taccgccctcccccggcagcAccccacctccaggagctcat	7	22	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	79343117	79343117	A	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	silent	c.4641	p.A1547	0.138	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	279	0	0	220	39	15.06	-	-	-	C	79343117	A	C	79343117	2	2	232	1	0	0	0	0	0	0	0	1	6090	146	6	5		5	FRAS1	4	79343117	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	169488	79343117	111811159	741	16267										
FRAS1	0	genome.wustl.edu	37	chr4	79403039	79403039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtgcaacgcggccctcagAcccagcttctgccacaccag	10	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	79403039	79403039	A	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.8525	p.D2842A	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	283	1	0.35	221	28	11.16	-	-	-	C	79403039	A	C	79403039	3	2	232	1	0	0	0	0	1	0	0	0	6090	275	10	5	8826	5	FRAS1	4	79403039	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	59922	79403039	111751237	742	16268										
FRAS1	0	genome.wustl.edu	37	chr4	79462124	79462124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagaggcacccggaccgggTggagaagaacgtgaatagac	15	9	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	79462124	79462124	T	G	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.11885	p.V3962G	0.998	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	86	0	0	62	15	19.48	-	-	-	G	79462124	T	G	79462124	3	3	232	1	0	0	0	0	1	0	0	0	6090	1696	59	5	12254	5	FRAS1	4	79462124	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	59085	79462124	111692152	743	16269										
GK2	0	genome.wustl.edu	37	chr4	80329197	80329197	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttctttagggtcttgttccAcccatccttcttttgggaac	7	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	80329197	80329197	A	C	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	missense	c.158	p.V53G	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	232	0	0	199	34	14.53	-	-	-	C	80329197	A	C	80329197	3	2	232	1	0	0	0	0	1	0	0	0	6473	159	6	5	1507	5	GK2	4	80329197	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	867073	80329197	110825079	744	16270										
SCD5	0	genome.wustl.edu	37	chr4	83626523	83626523	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctccacaagcgatgggcAccagctgtcacacccagagc	11	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	83626523	83626523	A	C	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	silent	c.276	p.G92	0.863	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	46	0	0	43	9	16.67	-	-	-	C	83626523	A	C	83626523	2	2	232	1	0	0	0	0	0	0	0	1	13974	146	6	5		5	SCD5	4	83626523	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3297326	83626523	107527753	745	16271										
THAP9	0	genome.wustl.edu	37	chr4	83838855	83838855	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaatatttgttatccttagAcctgccaccttttcaaaact	4	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	83838855	83838855	A	C	SNP	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	missense	c.1490	p.D497A	0.027	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	280	0	0	298	35	10.45	-	-	-	C	83838855	A	C	83838855	3	2	232	1	0	0	0	0	1	0	0	0	15946	275	10	5	1508	5	THAP9	4	83838855	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	212332	83838855	107315421	746	16272										
ARHGAP24	0	genome.wustl.edu	37	chr4	86916075	86916075	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctctcatggtcaaaaagaAcccagcctttaataagggta	7	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	86916075	86916075	A	C	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	missense	c.1268	p.N423T	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	560	4	0.71	316	41	11.45	-	-	-	C	86916075	A	C	86916075	3	2	232	1	0	0	0	0	1	0	0	0	875	43	2	5	1414	5	ARHGAP24	4	86916075	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3077220	86916075	104238201	747	16273										
ARHGAP24	0	genome.wustl.edu	37	chr4	86916536	86916536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgtcgctcttctaccaccAcctgcccagagcaagacttt	6	17	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	86916536	86916536	A	C	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	missense	c.1729	p.T577P	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	223	2	0.89	159	29	15.26	-	-	-	C	86916536	A	C	86916536	3	2	232	1	0	0	0	0	1	0	0	0	875	159	6	5	1875	5	ARHGAP24	4	86916536	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	461	86916536	104237740	748	16274										
AFF1	0	genome.wustl.edu	37	chr4	87968167	87968167	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgccaaaagctgcggcccAccggacagccagcacctgac	10	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	87968167	87968167	A	C	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	silent	c.480	p.P160	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	201	1	0.5	224	36	13.85	-	-	-	C	87968167	A	C	87968167	2	2	232	1	0	0	0	0	0	0	0	1	356	146	6	5		5	AFF1	4	87968167	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1051631	87968167	103186109	749	16275										
AFF1	0	genome.wustl.edu	37	chr4	87968533	87968533	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgccttctcagacatttccAcctccctccctcccctcaaa	2	22	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	87968533	87968533	A	C	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	silent	c.846	p.P282	0.927	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	373	3	0.79	391	50	11.26	-	-	-	C	87968533	A	C	87968533	2	2	232	1	0	0	0	0	0	0	0	1	356	146	6	5		5	AFF1	4	87968533	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	366	87968533	103185743	750	16276										
KLHL8	0	genome.wustl.edu	37	chr4	88085134	88085134	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgttgcgattcccactccAcctctgggagtagtaagtgc	10	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	88085134	88085134	A	C	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	silent	c.1635	p.G545	0.437	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	286	2	0.69	135	31	18.56	-	-	-	C	88085134	A	C	88085134	2	2	232	1	0	0	0	0	0	0	0	1	8448	146	6	5		5	KLHL8	4	88085134	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	116601	88085134	103069142	751	16277										
SPARCL1	0	genome.wustl.edu	37	chr4	88415325	88415325	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcattgtgggtaccaacttcAcctggctctttttcttcttc	6	12	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	88415325	88415325	A	C	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	silent	c.627	p.G209	0.000	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	511	0	0	476	65	11.99	-	-	-	C	88415325	A	C	88415325	2	2	232	1	0	0	0	0	0	0	0	1	15087	146	6	5		5	SPARCL1	4	88415325	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	330191	88415325	102738951	752	16278										
MEPE	0	genome.wustl.edu	37	chr4	88767250	88767250	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaggcagtaccagaaagggTgtagatcattctaataggaa	11	5	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	88767250	88767250	T	G	SNP	MEPE	ENST00000361056	human	ensembl	69_37n	1	known	silent	c.1230	p.G410	0.000	NULL	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595	107	0	0	119	19	13.67	-	-	-	G	88767250	T	G	88767250	2	3	232	1	0	0	0	0	0	0	0	1	9549	1683	59	5		5	MEPE	4	88767250	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	351925	88767250	102387026	753	16279										
NAP1L5	0	genome.wustl.edu	37	chr4	89618518	89618518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccctccaaggtccatgcacAcccctccatctcgccggtga	7	20	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	89618518	89618518	A	C	SNP	NAP1L5	ENST00000323061	human	ensembl	69_37n	-1	known	missense	c.388	p.C130G	0.631	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L5	HGNC	ENSG00000177432	121	1	0.82	110	28	20.29	-	-	-	C	89618518	A	C	89618518	3	2	232	1	0	0	0	0	1	0	0	0	10232	159	6	5	164	5	NAP1L5	4	89618518	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	851268	89618518	101535758	754	16280										
MTTP	0	genome.wustl.edu	37	chr4	100521744	100521744	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagctggtggatgctgtcAcctctgctcagacctcagac	10	14	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	100521744	100521744	A	C	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	missense	c.1090	p.T364P	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	264	0	0	187	27	12.62	-	-	-	C	100521744	A	C	100521744	3	2	232	1	0	0	0	0	1	0	0	0	10036	159	6	5	1124	5	MTTP	4	100521744	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10903226	100521744	90632532	755	16281										
COL25A1	0	genome.wustl.edu	37	chr4	109784541	109784541	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccctgcttccccccgttcAccctgtcacaaattgcaaaa	6	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	109784541	109784541	A	C	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	silent	c.1086	p.G362	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	63	0	0	74	19	20.43	-	-	-	C	109784541	A	C	109784541	2	2	232	1	0	0	0	0	0	0	0	1	3714	146	6	5		5	COL25A1	4	109784541	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9262797	109784541	81369735	756	16282										
CFI	0	genome.wustl.edu	37	chr4	110681502	110681502	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tactggcttggaatgcaaacAcccgatttgcaatggaagcc	10	10	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	110681502	110681502	A	C	SNP	CFI	ENST00000394634	human	ensembl	69_37n	-1	known	silent	c.807	p.G269	0.990	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_LDrepeatLR_classA_rpt,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFI	HGNC	ENSG00000205403	219	1	0.45	193	27	12.22	-	-	-	C	110681502	A	C	110681502	2	2	232	1	0	0	0	0	0	0	0	1	3318	146	6	5		5	CFI	4	110681502	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	896961	110681502	80472774	757	16283										
EGF	0	genome.wustl.edu	37	chr4	110902053	110902053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaggcttggaactgcttggTgttcgtgtcgtgaaggtttt	15	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	110902053	110902053	T	G	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	missense	c.2293	p.C765G	0.954	pirsf_Pro-epidermal_GF,smart_EGF-like_Ca-bd,smart_EGF-like	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	295	1	0.34	240	39	13.98	-	-	-	G	110902053	T	G	110902053	3	3	232	1	0	0	0	0	1	0	0	0	4997	1696	59	5	2351	5	EGF	4	110902053	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	220551	110902053	80252223	758	16284										
ALPK1	0	genome.wustl.edu	37	chr4	113353097	113353097	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagaaagcactgaagatgcAcccttagactttcacagggt	10	10	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	113353097	113353097	A	C	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	1	known	silent	c.2394	p.A798	0.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	151	0	0	104	22	17.32	-	-	-	C	113353097	A	C	113353097	2	2	232	1	0	0	0	0	0	0	0	1	544	146	6	5		5	ALPK1	4	113353097	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2451044	113353097	77801179	759	16285										
ANK2	0	genome.wustl.edu	37	chr4	114275420	114275420	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaaacactcacctgtatcAccctcgacaaaaactgaaag	6	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	114275420	114275420	A	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.5646	p.S1882	0.981	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	390	3	0.76	392	76	16.14	-	-	-	C	114275420	A	C	114275420	2	2	232	1	0	0	0	0	0	0	0	1	621	146	6	5		5	ANK2	4	114275420	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	922323	114275420	76878856	760	16286										
TRAM1L1	0	genome.wustl.edu	37	chr4	118005583	118005583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatattagaatcttctacccAcctctgaagccagagagtaa	6	10	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	118005583	118005583	A	C	SNP	TRAM1L1	ENST00000310754	human	ensembl	69_37n	-1	known	missense	c.967	p.W323G	0.998	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599	242	0	0	164	26	13.68	-	-	-	C	118005583	A	C	118005583	3	2	232	1	0	0	0	0	1	0	0	0	16548	159	6	5	146	5	TRAM1L1	4	118005583	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3730163	118005583	73148693	761	16287										
NDST3	0	genome.wustl.edu	37	chr4	118975235	118975235	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactgtggcgacctccaacAcctaccatatcaactaatgg	7	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	118975235	118975235	A	C	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	missense	c.170	p.H57P	0.043	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	200	0	0	110	34	23.45	-	-	-	C	118975235	A	C	118975235	3	2	232	1	0	0	0	0	1	0	0	0	10329	159	6	5	172	5	NDST3	4	118975235	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	969652	118975235	72179041	762	16288										
PRSS12	0	genome.wustl.edu	37	chr4	119229661	119229661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcatcacagattgttccccActggccattgataaaaacct	5	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	119229661	119229661	A	C	SNP	PRSS12	ENST00000296498	human	ensembl	69_37n	-1	known	missense	c.1561	p.W521G	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Kringle,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Srcr_rcpt,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099	203	2	0.98	196	28	12.5	-	-	-	C	119229661	A	C	119229661	3	2	232	1	0	0	0	0	1	0	0	0	12695	159	6	5	1090	5	PRSS12	4	119229661	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	254426	119229661	71924615	763	16289										
MYOZ2	0	genome.wustl.edu	37	chr4	120079261	120079261	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccccttgactcctcccaacAccccagatccacgaagccct	4	22	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	120079261	120079261	A	C	SNP	MYOZ2	ENST00000307128	human	ensembl	69_37n	1	known	missense	c.331	p.T111P	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ2	HGNC	ENSG00000172399	327	2	0.61	310	53	14.6	-	-	-	C	120079261	A	C	120079261	3	2	232	1	0	0	0	0	1	0	0	0	10168	159	6	5	341	5	MYOZ2	4	120079261	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	849600	120079261	71075015	764	16290										
EXOSC9	0	genome.wustl.edu	37	chr4	122734398	122734398	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccacatacaggaaagaaggTggaaagtttggttttgcaga	12	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	122734398	122734398	T	G	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	silent	c.837	p.G279	0.998	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	201	2	0.98	143	31	17.71	-	-	-	G	122734398	T	G	122734398	2	3	232	1	0	0	0	0	0	0	0	1	5358	1683	59	5		5	EXOSC9	4	122734398	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2655137	122734398	68419878	765	16291										
KIAA1109	0	genome.wustl.edu	37	chr4	123255664	123255664	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtccagagcaagactaacAccttacttcctccccagccc	5	18	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	123255664	123255664	A	C	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.11812	p.T3938P	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	156	0	0	107	25	18.94	-	-	-	C	123255664	A	C	123255664	3	2	232	1	0	0	0	0	1	0	0	0	8260	159	6	5	12078	5	KIAA1109	4	123255664	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	521266	123255664	67898612	766	16292										
IL21	0	genome.wustl.edu	37	chr4	123536876	123536876	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccctgcatttgtggaaggTggtttcctcttcagcttttt	9	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	123536876	123536876	T	G	SNP	IL21	ENST00000264497	human	ensembl	69_37n	-1	known	silent	c.321	p.P107	0.424	pfam_Interleukin_15-like	pfam_Interleukin_15-like	-	no_errors	IL21	HGNC	ENSG00000138684	183	0	0	110	26	18.98	-	-	-	G	123536876	T	G	123536876	2	3	232	1	0	0	0	0	0	0	0	1	7724	1683	59	5		5	IL21	4	123536876	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	281212	123536876	67617400	767	16293										
SPRY1	0	genome.wustl.edu	37	chr4	124323033	124323033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagcacagacacacaagccAcctgggacatgcagtactcc	9	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	124323033	124323033	A	C	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	missense	c.287	p.H96P	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	133	0	0	108	20	15.62	-	-	-	C	124323033	A	C	124323033	3	2	232	1	0	0	0	0	1	0	0	0	15196	159	6	5	289	5	SPRY1	4	124323033	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	786157	124323033	66831243	768	16294										
ANKRD50	0	genome.wustl.edu	37	chr4	125599895	125599895	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagaagcaatagccatggTggaaagaactcatggtgacc	12	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	125599895	125599895	T	G	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	silent	c.678	p.P226	0.613	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	298	0	0	276	42	13.17	-	-	-	G	125599895	T	G	125599895	2	3	232	1	0	0	0	0	0	0	0	1	676	1683	59	5		5	ANKRD50	4	125599895	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1276862	125599895	65554381	769	16295										
ANKRD50	0	genome.wustl.edu	37	chr4	125599964	125599964	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctggtagacgtttgttcAccttcagtaatgttacaccc	8	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	125599964	125599964	A	C	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	silent	c.609	p.G203	0.019	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	288	0	0	276	36	11.46	-	-	-	C	125599964	A	C	125599964	2	2	232	1	0	0	0	0	0	0	0	1	676	146	6	5		5	ANKRD50	4	125599964	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69	125599964	65554312	770	16296										
FAT4	0	genome.wustl.edu	37	chr4	126370103	126370103	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggatagaggccagagacggTggtttccctcctttctcctc	11	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	126370103	126370103	T	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.7932	p.G2644	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	110	0	0	70	32	31.37	-	-	-	G	126370103	T	G	126370103	2	3	232	1	0	0	0	0	0	0	0	1	5738	1683	59	5		5	FAT4	4	126370103	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	770139	126370103	64784173	771	16297										
FAT4	0	genome.wustl.edu	37	chr4	126412028	126412028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atatggtcaaggtttgagaaCcagctccctaagccactcag	9	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	126412028	126412028	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.14051	p.T4684I	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	237	0	0	153	41	21.03	-	-	-	T	126412028	C	T	126412028	3	4	232	1	0	0	0	0	1	0	0	0	5738	507	18	4	14117	4	FAT4	4	126412028	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	41925	126412028	64742248	772	16298										
PCDH10	0	genome.wustl.edu	37	chr4	134084338	134084338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcagagcggtccttttccAcctttggcaaagagaaggcc	13	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	134084338	134084338	A	C	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.3004	p.T1002P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	218	0	0	154	25	13.97	-	-	-	C	134084338	A	C	134084338	3	2	232	1	0	0	0	0	1	0	0	0	11580	159	6	5	3078	5	PCDH10	4	134084338	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7672310	134084338	57069938	773	16299										
PCDH18	0	genome.wustl.edu	37	chr4	138451006	138451006	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgggatggcctttttgggTggtgctggtaagttgattcg	17	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	138451006	138451006	T	G	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.2237	p.H746P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	145	0	0	104	18	14.75	-	-	-	G	138451006	T	G	138451006	3	3	232	1	0	0	0	0	1	0	0	0	11586	1696	59	5	1186	5	PCDH18	4	138451006	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4366668	138451006	52703270	774	16300										
PCDH18	0	genome.wustl.edu	37	chr4	138451790	138451790	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctgtggctgtaacagtggTgatatatgcccctggtgagt	13	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	138451790	138451790	T	G	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1453	p.T485P	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	316	1	0.31	229	37	13.86	-	-	-	G	138451790	T	G	138451790	3	3	232	1	0	0	0	0	1	0	0	0	11586	1696	59	5	1970	5	PCDH18	4	138451790	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	784	138451790	52702486	775	16301										
PCDH18	0	genome.wustl.edu	37	chr4	138451806	138451806	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggtgatatatgcccctggTgagttattttctgaaattac	10	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	138451806	138451806	T	G	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	silent	c.1437	p.S479	0.010	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	323	1	0.31	235	29	10.98	-	-	-	G	138451806	T	G	138451806	2	3	232	1	0	0	0	0	0	0	0	1	11586	1683	59	5		5	PCDH18	4	138451806	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	16	138451806	52702470	776	16302										
MAML3	0	genome.wustl.edu	37	chr4	140810736	140810736	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttggggttggccactggTggtgtcatcctctgactcag	14	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	140810736	140810736	T	G	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.1854	p.P618	0.004	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	501	3	0.59	363	48	11.59	-	-	-	G	140810736	T	G	140810736	2	3	232	1	0	0	0	0	0	0	0	1	9278	1683	59	5		5	MAML3	4	140810736	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2358930	140810736	50343540	777	16303										
TBC1D9	0	genome.wustl.edu	37	chr4	141578947	141578947	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgctagctcctcaaagacAccttggtccaccagtgcacc	8	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	141578947	141578947	A	C	SNP	TBC1D9	ENST00000442267	human	ensembl	69_37n	-1	known	silent	c.1941	p.G647	0.509	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436	250	1	0.4	278	50	15.24	-	-	-	C	141578947	A	C	141578947	2	2	232	1	0	0	0	0	0	0	0	1	15722	146	6	5		5	TBC1D9	4	141578947	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	768211	141578947	49575329	778	16304										
GAB1	0	genome.wustl.edu	37	chr4	144361462	144361462	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtccagcccaaaaaccccTcccagaaggccagttcctgt	8	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	144361462	144361462	T	C	SNP	GAB1	ENST00000262995	human	ensembl	69_37n	1	known	silent	c.1512	p.P504	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458	212	1	0.46	180	27	12.92	-	-	-	C	144361462	T	C	144361462	2	2	232	1	0	0	0	0	0	0	0	1	6197	1538	54	5		5	GAB1	4	144361462	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2782515	144361462	46792814	779	16305										
SMARCA5	0	genome.wustl.edu	37	chr4	144464812	144464812	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaagaggtgcaaagaaggTgagatgtagattaaataatg	14	1	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	144464812	144464812	T	G	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	splice_site	c.2052+2	e15+2	1.000	-	-	-	no_errors	SMARCA5	HGNC	ENSG00000153147	258	0	0	179	23	11.39	-	-	-	G	144464812	T	G	144464812	5	3	232	1	0	0	0	0	0	0	1	0	14860	1710	59	5	2112	5	SMARCA5	4	144464812	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	103350	144464812	46689464	780	16306										
EDNRA	0	genome.wustl.edu	37	chr4	148457053	148457053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accaagatgtaaaggactggTggctcttcgggttctatttc	11	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	148457053	148457053	T	G	SNP	EDNRA	ENST00000324300	human	ensembl	69_37n	1	known	missense	c.772	p.W258G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ETA_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	EDNRA	HGNC	ENSG00000151617	385	2	0.52	290	33	10.19	-	-	-	G	148457053	T	G	148457053	3	3	232	1	0	0	0	0	1	0	0	0	4954	1696	59	5	786	5	EDNRA	4	148457053	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3992241	148457053	42697223	781	16307										
TMEM184C	0	genome.wustl.edu	37	chr4	148555441	148555441	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccattgcttcttctatgccAccttcacccatgggtcacta	5	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	148555441	148555441	A	C	SNP	TMEM184C	ENST00000296582	human	ensembl	69_37n	1	known	silent	c.1173	p.P391	0.922	NULL	pfam_Ost-alpha	-	no_errors	TMEM184C	HGNC	ENSG00000164168	258	1	0.39	222	27	10.84	-	-	-	C	148555441	A	C	148555441	2	2	232	1	0	0	0	0	0	0	0	1	16201	146	6	5		5	TMEM184C	4	148555441	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	98388	148555441	42598835	782	16308										
PRMT10	0	genome.wustl.edu	37	chr4	148594997	148594997	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcactgctttatgaaaatAcccagctgcttcatccctaa	4	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	148594997	148594997	A	C	SNP	PRMT10	ENST00000322396	human	ensembl	69_37n	-1	known	missense	c.367	p.Y123D	0.979	pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169	108	1	0.92	103	30	22.56	-	-	-	C	148594997	A	C	148594997	3	2	232	1	0	0	0	0	1	0	0	0	12617	391	14	5	2210	5	PRMT10	4	148594997	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	39556	148594997	42559279	783	16309										
LRBA	0	genome.wustl.edu	37	chr4	151749400	151749400	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggctccaaggcaggctggTggcagaagggcaggatccac	17	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	151749400	151749400	T	G	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.1061	p.H354P	0.973	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	262	2	0.75	226	72	23.92	-	-	-	G	151749400	T	G	151749400	3	3	232	1	0	0	0	0	1	0	0	0	8997	1683	59	5	3604	5	LRBA	4	151749400	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3154403	151749400	39404876	784	16310										
FBXW7	0	genome.wustl.edu	37	chr4	153247265	153247265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atatgctccactaacaacccTcctgccatcatattgaacac	3	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	153247265	153247265	T	C	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1537	p.R513G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	166	1	0.6	133	22	14.19	-	-	-	C	153247265	T	C	153247265	3	2	232	1	0	0	0	0	1	0	0	0	5815	1550	54	5	598	5	FBXW7	4	153247265	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1497865	153247265	37907011	785	16311										
FGA	0	genome.wustl.edu	37	chr4	155507334	155507334	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggacttacatttcctgacAcctcttcaaatgtgccccag	6	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	155507334	155507334	A	C	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.1247	p.V416G	0.000	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	211	1	0.47	245	33	11.87	-	-	-	C	155507334	A	C	155507334	3	2	232	1	0	0	0	0	1	0	0	0	5876	159	6	5	1405	5	FGA	4	155507334	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2260069	155507334	35646942	786	16312										
ETFDH	0	genome.wustl.edu	37	chr4	159620193	159620193	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catttagagagttccaaaggTggaaacaccatcctagcatt	8	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	159620193	159620193	T	G	SNP	ETFDH	ENST00000511912	human	ensembl	69_37n	1	known	missense	c.1027	p.W343G	1.000	NULL	pfam_ETFD_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	ETFDH	HGNC	ENSG00000171503	238	1	0.42	191	25	11.52	-	-	-	G	159620193	T	G	159620193	3	3	232	1	0	0	0	0	1	0	0	0	5308	1696	59	5	1061	5	ETFDH	4	159620193	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4112859	159620193	31534083	787	16313										
RAPGEF2	0	genome.wustl.edu	37	chr4	160235763	160235763	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccacagaaagcgaggctggTgatatggacctgagtgggtt	16	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	160235763	160235763	T	G	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	silent	c.213	p.G71	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	122	0	0	55	18	24.66	-	-	-	G	160235763	T	G	160235763	2	3	232	1	0	0	0	0	0	0	0	1	13127	1683	59	5		5	RAPGEF2	4	160235763	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	615570	160235763	30918513	788	16314										
AADAT	0	genome.wustl.edu	37	chr4	171009669	171009669	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtttggatttggtaagccAccagccaaggagatcatcga	11	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	171009669	171009669	A	C	SNP	AADAT	ENST00000509167	human	ensembl	69_37n	-1	known	silent	c.126	p.G42	0.998	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AADAT	HGNC	ENSG00000109576	171	0	0	76	21	21.65	-	-	-	C	171009669	A	C	171009669	2	2	232	1	0	0	0	0	0	0	0	1	14	146	6	5		5	AADAT	4	171009669	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10773906	171009669	20144607	789	16315										
FAM149A	0	genome.wustl.edu	37	chr4	187084674	187084674	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagacactcatggattatcAccttctgcaaagaaaacacc	5	12	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	187084674	187084674	A	C	SNP	FAM149A	ENST00000356371	human	ensembl	69_37n	1	known	silent	c.1803	p.S601	0.000	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794	71	0	0	109	22	16.79	-	-	-	C	187084674	A	C	187084674	2	2	232	1	0	0	0	0	0	0	0	1	5495	146	6	5		5	FAM149A	4	187084674	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	16075005	187084674	4069602	790	16316										
KLKB1	0	genome.wustl.edu	37	chr4	187171492	187171492	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtgtgtcggaccatctgcAcctatcaccccaactgcctc	7	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	187171492	187171492	A	C	SNP	KLKB1	ENST00000264690	human	ensembl	69_37n	1	known	missense	c.694	p.T232P	1.000	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app,prints_Apple	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A	-	no_errors	KLKB1	HGNC	ENSG00000164344	308	2	0.65	244	33	11.87	-	-	-	C	187171492	A	C	187171492	3	2	232	1	0	0	0	0	1	0	0	0	8465	159	6	5	716	5	KLKB1	4	187171492	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	86818	187171492	3982784	791	16317										
FAT1	0	genome.wustl.edu	37	chr4	187541453	187541453	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catagcgaatgacatggcccAcctcagtgtccactttaaca	7	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	187541453	187541453	A	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6287	p.V2096G	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	248	1	0.4	173	25	12.5	-	-	-	C	187541453	A	C	187541453	3	2	232	1	0	0	0	0	1	0	0	0	5735	159	6	5	7551	5	FAT1	4	187541453	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	369961	187541453	3612823	792	16318										
FAT1	0	genome.wustl.edu	37	chr4	187629077	187629077	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtggaaagacacctttgcAcctaagccatccattagcga	8	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	187629077	187629077	A	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	silent	c.1905	p.G635	0.457	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	69	0	0	83	19	18.63	-	-	-	C	187629077	A	C	187629077	2	2	232	1	0	0	0	0	0	0	0	1	5735	146	6	5		5	FAT1	4	187629077	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87624	187629077	3525199	793	16319										
ZFP42	0	genome.wustl.edu	37	chr4	188924198	188924198	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atagaatgcgtcataaggggTgagttttctcaacccatcct	9	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	4	188924198	188924198	T	G	SNP	ZFP42	ENST00000326866	human	ensembl	69_37n	1	known	silent	c.237	p.G79	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059	113	0	0	72	19	20.65	-	-	-	G	188924198	T	G	188924198	2	3	232	1	0	0	0	0	0	0	0	1	17746	1683	59	5		5	ZFP42	4	188924198	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1295121	188924198	2230078	794	16320										
ADAMTS16	0	genome.wustl.edu	37	chr5	5303709	5303709	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacacacctgtgggaaggggTggaggaagcgggcagtggcc	19	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	5303709	5303709	T	G	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.3016	p.W1006G	0.781	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	52	0	0	47	13	21.31	-	-	-	G	5303709	T	G	5303709	3	3	232	1	0	0	0	0	1	0	0	0	261	1696	59	5	3094	5	ADAMTS16	5	5303709	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		5303709	175611551	795	16321										
ADAMTS16	0	genome.wustl.edu	37	chr5	5306829	5306829	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggggcagctggtttgcctcAccctggtctcaggtagggga	16	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	5306829	5306829	A	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.3399	p.S1133	0.081	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	20	0	0	19	9	32.14	-	-	-	C	5306829	A	C	5306829	2	2	232	1	0	0	0	0	0	0	0	1	261	146	6	5		5	ADAMTS16	5	5306829	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3120	5306829	175608431	796	16322										
KIAA0947	0	genome.wustl.edu	37	chr5	5461350	5461350	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtttttcttcctcttctAccttggtagcattgtctgtt	6	11	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	5461350	5461350	A	C	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.1903	p.T635P	0.001	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	166	1	0.6	193	45	18.91	-	-	-	C	5461350	A	C	5461350	3	2	232	1	0	0	0	0	1	0	0	0	8254	391	14	5	1953	5	KIAA0947	5	5461350	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	154521	5461350	175453910	797	16323										
MTRR	0	genome.wustl.edu	37	chr5	7897315	7897315	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcttcatggccagcaggTggcgagaatcctcctccagg	12	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	7897315	7897315	T	G	SNP	MTRR	ENST00000264668	human	ensembl	69_37n	1	known	missense	c.1988	p.V663G	0.996	pfam_OxRdtase_FAD/NAD-bd	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	MTRR	HGNC	ENSG00000124275	119	1	0.83	80	15	15.79	-	-	-	G	7897315	T	G	7897315	3	3	232	1	0	0	0	0	1	0	0	0	10033	1696	59	5	2042	5	MTRR	5	7897315	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2435965	7897315	173017945	798	16324										
TRIO	0	genome.wustl.edu	37	chr5	14504677	14504677	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgacacctttgagacccccAccagctacatcctggtctta	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	14504677	14504677	A	C	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.8587	p.T2863P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	168	0	0	82	36	30.51	-	-	-	C	14504677	A	C	14504677	3	2	232	1	0	0	0	0	1	0	0	0	16648	159	6	5	8805	5	TRIO	5	14504677	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6607362	14504677	166410583	799	16325										
PDZD2	0	genome.wustl.edu	37	chr5	31983723	31983723	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaacgccgcttctcaaaaggTgggaagacggacttccaatc	10	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	31983723	31983723	T	G	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	silent	c.939	p.G313	0.997	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	153	0	0	202	30	12.66	-	-	-	G	31983723	T	G	31983723	2	3	232	1	0	0	0	0	0	0	0	1	11774	1683	59	5		5	PDZD2	5	31983723	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	17479046	31983723	148931537	800	16326										
MTMR12	0	genome.wustl.edu	37	chr5	32274159	32274159	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcagacaagcctcccatagAccccatgctgacaggaatct	8	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	32274159	32274159	A	C	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	missense	c.212	p.V71G	0.970	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	186	0	0	221	25	10.16	-	-	-	C	32274159	A	C	32274159	3	2	232	1	0	0	0	0	1	0	0	0	10013	275	10	5	2087	5	MTMR12	5	32274159	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	290436	32274159	148641101	801	16327										
TARS	0	genome.wustl.edu	37	chr5	33462213	33462213	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttctttatagccatgatggTgatgataagaaaaggccagt	10	5	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	33462213	33462213	T	G	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	silent	c.1740	p.G580	0.998	pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	170	1	0.58	112	29	20.42	-	-	-	G	33462213	T	G	33462213	2	3	232	1	0	0	0	0	0	0	0	1	15651	1683	59	5		5	TARS	5	33462213	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1188054	33462213	147453047	802	16328										
ADAMTS12	0	genome.wustl.edu	37	chr5	33561148	33561148	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaccttgctccagtttcccActttccagccagcacaggga	7	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	33561148	33561148	A	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.4109	p.V1370G	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	254	1	0.39	218	48	17.91	-	-	-	C	33561148	A	C	33561148	3	2	232	1	0	0	0	0	1	0	0	0	257	159	6	5	695	5	ADAMTS12	5	33561148	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	98935	33561148	147354112	803	16329										
ADAMTS12	0	genome.wustl.edu	37	chr5	33576498	33576498	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccattactgtgctgaagggTggccaccaggactccctgct	11	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	33576498	33576498	T	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	silent	c.3633	p.P1211	0.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	266	0	0	213	28	11.62	-	-	-	G	33576498	T	G	33576498	2	3	232	1	0	0	0	0	0	0	0	1	257	1683	59	5		5	ADAMTS12	5	33576498	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	15350	33576498	147338762	804	16330										
ADAMTS12	0	genome.wustl.edu	37	chr5	33577083	33577083	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggacgggctttagtgttggTgggttttttccattggaaat	15	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	33577083	33577083	T	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	silent	c.3048	p.P1016	0.001	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	286	0	0	220	32	12.7	-	-	-	G	33577083	T	G	33577083	2	3	232	1	0	0	0	0	0	0	0	1	257	1683	59	5		5	ADAMTS12	5	33577083	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	585	33577083	147338177	805	16331										
AMACR	0	genome.wustl.edu	37	chr5	33998840	33998840	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcgtatagaaaggtgctccAccatccaacatgttctgtcc	8	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	33998840	33998840	A	C	SNP	AMACR	ENST00000441713	human	ensembl	69_37n	-1	known	missense	c.484	p.W162G	0.988	NULL	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110	116	0	0	85	17	16.67	-	-	-	C	33998840	A	C	33998840	3	2	232	1	0	0	0	0	1	0	0	0	562	159	6	5	841	5	AMACR	5	33998840	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	421757	33998840	146916420	806	16332										
SPEF2	0	genome.wustl.edu	37	chr5	35800152	35800152	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctttactttgcttgccAcccagacaccgtggaaggag	11	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	35800152	35800152	A	C	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	missense	c.4913	p.H1638P	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	349	2	0.57	291	39	11.75	-	-	-	C	35800152	A	C	35800152	3	2	232	1	0	0	0	0	1	0	0	0	15126	159	6	5	5068	5	SPEF2	5	35800152	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1801312	35800152	145115108	807	16333										
UGT3A1	0	genome.wustl.edu	37	chr5	35955885	35955885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccattgactggtaatcccAccatgggcacaccatgacgg	9	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	35955885	35955885	A	C	SNP	UGT3A1	ENST00000274278	human	ensembl	69_37n	-1	known	missense	c.1157	p.V386G	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626	206	0	0	217	34	13.55	-	-	-	C	35955885	A	C	35955885	3	2	232	1	0	0	0	0	1	0	0	0	17060	159	6	5	422	5	UGT3A1	5	35955885	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	155733	35955885	144959375	808	16334										
NIPBL	0	genome.wustl.edu	37	chr5	36984830	36984830	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacccacaggaggctgggggTgctacaggaggtaatagacc	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	36984830	36984830	T	G	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	silent	c.1548	p.G516	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	353	1	0.28	261	63	19.33	-	-	-	G	36984830	T	G	36984830	2	3	232	1	0	0	0	0	0	0	0	1	10500	1683	59	5		5	NIPBL	5	36984830	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1028945	36984830	143930430	809	16335										
NIPBL	0	genome.wustl.edu	37	chr5	36984842	36984842	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgggggtgctacaggaggTaatagaccagcttctcagga	15	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	36984842	36984842	T	G	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	silent	c.1560	p.G520	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	373	2	0.53	286	53	15.45	-	-	-	G	36984842	T	G	36984842	2	3	232	1	0	0	0	0	0	0	0	1	10500	1625	57	5		5	NIPBL	5	36984842	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12	36984842	143930418	810	16336										
NIPBL	0	genome.wustl.edu	37	chr5	36985403	36985403	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaccccaaagcaaaagggTgaaagccggcctgagactcc	11	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	36985403	36985403	T	G	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	silent	c.2121	p.G707	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	277	2	0.72	239	47	16.21	-	-	-	G	36985403	T	G	36985403	2	3	232	1	0	0	0	0	0	0	0	1	10500	1683	59	5		5	NIPBL	5	36985403	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	561	36985403	143929857	811	16337										
WDR70	0	genome.wustl.edu	37	chr5	37701206	37701206	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccgacaatttaataaaccActtttttcagcctcgggtct	5	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	37701206	37701206	A	C	SNP	WDR70	ENST00000265107	human	ensembl	69_37n	1	known	silent	c.1239	p.P413	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068	110	0	0	82	19	18.63	-	-	-	C	37701206	A	C	37701206	2	2	232	1	0	0	0	0	0	0	0	1	17418	146	6	5		5	WDR70	5	37701206	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	715803	37701206	143214054	812	16338										
RICTOR	0	genome.wustl.edu	37	chr5	38947476	38947476	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaggaagatcgttgcagggTattttgattaataggactca	12	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	38947476	38947476	T	G	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.4276	p.T1426P	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	190	1	0.52	105	20	16	-	-	-	G	38947476	T	G	38947476	3	3	232	1	0	0	0	0	1	0	0	0	13442	1638	57	5	950	5	RICTOR	5	38947476	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1246270	38947476	141967784	813	16339										
C7	0	genome.wustl.edu	37	chr5	40958263	40958263	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccggccttgtcaaaatggTggtttggctactgttgaggg	15	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	40958263	40958263	T	G	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	silent	c.1389	p.G463	0.955	prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	136	0	0	104	19	15.45	-	-	-	G	40958263	T	G	40958263	2	3	232	1	0	0	0	0	0	0	0	1	2398	1683	59	5		5	C7	5	40958263	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2010787	40958263	139956997	814	16340										
C7	0	genome.wustl.edu	37	chr5	40972586	40972586	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacacagttggtgagaaggTgactgtttcctgttcaggtg	13	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	40972586	40972586	T	G	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.1964	p.V655G	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	281	1	0.35	291	34	10.46	-	-	-	G	40972586	T	G	40972586	3	3	232	1	0	0	0	0	1	0	0	0	2398	1696	59	5	2022	5	C7	5	40972586	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	14323	40972586	139942674	815	16341										
C6	0	genome.wustl.edu	37	chr5	41161915	41161915	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctccatattcactccttccAcctcgaatcagggatatgga	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	41161915	41161915	A	C	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	silent	c.1338	p.G446	0.520	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	194	0	0	157	31	16.49	-	-	-	C	41161915	A	C	41161915	2	2	232	1	0	0	0	0	0	0	0	1	2336	146	6	5		5	C6	5	41161915	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	189329	41161915	139753345	816	16342										
NNT	0	genome.wustl.edu	37	chr5	43644382	43644382	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatttagctgctgaggctggTggaaactttgaaaccactaa	11	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	43644382	43644382	T	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	silent	c.1053	p.G351	0.243	pfam_AlaDH/PNT_NAD(H)-bd,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	140	1	0.71	107	23	17.56	-	-	-	G	43644382	T	G	43644382	2	3	232	1	0	0	0	0	0	0	0	1	10582	1683	59	5		5	NNT	5	43644382	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2482467	43644382	137270878	817	16343										
GZMA	0	genome.wustl.edu	37	chr5	54404052	54404052	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgtgccaagttgcagggTggggcaggactcacaatagt	14	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	54404052	54404052	T	G	SNP	GZMA	ENST00000274306	human	ensembl	69_37n	1	known	missense	c.457	p.W153G	0.997	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMA	HGNC	ENSG00000145649	126	0	0	114	28	19.58	-	-	-	G	54404052	T	G	54404052	3	3	232	1	0	0	0	0	1	0	0	0	6966	1696	59	5	471	5	GZMA	5	54404052	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10759670	54404052	126511208	818	16344										
PDE4D	0	genome.wustl.edu	37	chr5	58270654	58270654	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcagctagtgtcttcttccActtgactgccactgtccttt	7	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	58270654	58270654	A	C	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.2267	p.V756G	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	403	1	0.25	285	54	15.93	-	-	-	C	58270654	A	C	58270654	3	2	232	1	0	0	0	0	1	0	0	0	11715	159	6	5	166	5	PDE4D	5	58270654	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3866602	58270654	122644606	819	16345										
CD180	0	genome.wustl.edu	37	chr5	66492438	66492438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccggcagaaaacagcaccAcccaaaagaagcagctgacg	10	13	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	66492438	66492438	A	C	SNP	CD180	ENST00000256447	human	ensembl	69_37n	-1	known	missense	c.32	p.V11G	0.053	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061	258	1	0.39	208	32	13.33	-	-	-	C	66492438	A	C	66492438	3	2	232	1	0	0	0	0	1	0	0	0	3001	159	6	5	1965	5	CD180	5	66492438	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8221784	66492438	114422822	820	16346										
BDP1	0	genome.wustl.edu	37	chr5	70837390	70837390	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatgtcaggaactttcttcAcctgtcattactacatctcc	5	12	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	70837390	70837390	A	C	SNP	BDP1	ENST00000514903	human	ensembl	69_37n	1	known	missense	c.899	p.H300P	0.435	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BDP1	HGNC	ENSG00000145734	124	0	0	102	34	25	-	-	-	C	70837390	A	C	70837390	3	2	232	1	0	0	0	0	1	0	0	0	1399	146	6	5	6246	5	BDP1	5	70837390	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4344952	70837390	110077870	821	16347										
MAP1B	0	genome.wustl.edu	37	chr5	71490945	71490945	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcaaagaaaaggtaatggTgaaaaaagacaagccaataa	9	4	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	71490945	71490945	T	G	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.1763	p.V588G	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	246	2	0.8	198	34	14.17	-	-	-	G	71490945	T	G	71490945	3	3	232	1	0	0	0	0	1	0	0	0	9299	1696	59	5	1781	5	MAP1B	5	71490945	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	653555	71490945	109424315	822	16348										
MAP1B	0	genome.wustl.edu	37	chr5	71495041	71495041	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acacggacccctgaagagggTgggtactcatatgacataag	12	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	71495041	71495041	T	G	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	silent	c.5859	p.G1953	0.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	409	2	0.49	410	49	10.68	-	-	-	G	71495041	T	G	71495041	2	3	232	1	0	0	0	0	0	0	0	1	9299	1683	59	5		5	MAP1B	5	71495041	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4096	71495041	109420219	823	16349										
AP3B1	0	genome.wustl.edu	37	chr5	77409707	77409707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctgtctccttcctccccActttcgccttgttctccact	4	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	77409707	77409707	A	C	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.2118	p.S706R	0.485	pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	192	1	0.51	187	35	15.7	-	-	-	C	77409707	A	C	77409707	3	2	232	1	0	0	0	0	1	0	0	0	745	156	6	5	1202	5	AP3B1	5	77409707	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5914666	77409707	103505553	824	16350										
CMYA5	0	genome.wustl.edu	37	chr5	79026763	79026763	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccccgttaatattgaaaggTgtttctgagtacatgattcc	8	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79026763	79026763	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.2175	p.G725	0.011	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	342	1	0.29	284	32	10.09	-	-	-	G	79026763	T	G	79026763	2	3	232	1	0	0	0	0	0	0	0	1	3620	1683	59	5		5	CMYA5	5	79026763	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1617056	79026763	101888497	825	16351										
CMYA5	0	genome.wustl.edu	37	chr5	79027198	79027198	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttctgaatgccaggccccAccactttcagccaccccatc	5	19	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79027198	79027198	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.2610	p.P870	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	265	1	0.37	199	37	15.68	-	-	-	C	79027198	A	C	79027198	2	2	232	1	0	0	0	0	0	0	0	1	3620	146	6	5		5	CMYA5	5	79027198	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	435	79027198	101888062	826	16352										
CMYA5	0	genome.wustl.edu	37	chr5	79027211	79027211	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggccccaccactttcagccAccccatctgaatatgttgtt	6	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79027211	79027211	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.2623	p.T875P	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	252	1	0.4	208	28	11.86	-	-	-	C	79027211	A	C	79027211	3	2	232	1	0	0	0	0	1	0	0	0	3620	159	6	5	2629	5	CMYA5	5	79027211	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	79027211	101888049	827	16353										
CMYA5	0	genome.wustl.edu	37	chr5	79030767	79030767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcctatcagtggaacaggTgaagtcagaaacaatctcct	10	9	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79030767	79030767	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.6179	p.V2060G	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	308	1	0.32	186	32	14.68	-	-	-	G	79030767	T	G	79030767	3	3	232	1	0	0	0	0	1	0	0	0	3620	1696	59	5	6185	5	CMYA5	5	79030767	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3556	79030767	101884493	828	16354										
CMYA5	0	genome.wustl.edu	37	chr5	79031053	79031053	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgaggtgacacaaaatccAcctacacaaccaaaggtggc	8	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79031053	79031053	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.6465	p.P2155	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	391	0	0	259	29	10.07	-	-	-	C	79031053	A	C	79031053	2	2	232	1	0	0	0	0	0	0	0	1	3620	146	6	5		5	CMYA5	5	79031053	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	286	79031053	101884207	829	16355										
THBS4	0	genome.wustl.edu	37	chr5	79368165	79368165	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccaacgggacaaggatggTgatggtgtgggggatgcctg	19	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79368165	79368165	T	G	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	silent	c.1785	p.G595	0.560	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	337	1	0.3	286	44	13.29	-	-	-	G	79368165	T	G	79368165	2	3	232	1	0	0	0	0	0	0	0	1	15951	1683	59	5		5	THBS4	5	79368165	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	337112	79368165	101547095	830	16356										
SERINC5	0	genome.wustl.edu	37	chr5	79465268	79465268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctttctgtgtataaaacActgccatcaaaaccaagcct	5	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	79465268	79465268	A	C	SNP	SERINC5	ENST00000509193	human	ensembl	69_37n	-1	known	missense	c.653	p.V218G	0.390	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	78	0	0	96	17	14.91	-	-	-	C	79465268	A	C	79465268	3	2	232	1	0	0	0	0	1	0	0	0	14171	159	6	5	798	5	SERINC5	5	79465268	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	97103	79465268	101449992	831	16357										
CKMT2	0	genome.wustl.edu	37	chr5	80562047	80562047	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccaagatattaaggtgccAccccctctgcctcagtttgg	10	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	80562047	80562047	A	C	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	silent	c.1230	p.P410	0.107	NULL	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	241	1	0.41	181	40	18.02	-	-	-	C	80562047	A	C	80562047	2	2	232	1	0	0	0	0	0	0	0	1	3481	146	6	5		5	CKMT2	5	80562047	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1096779	80562047	100353213	832	16358										
VCAN	0	genome.wustl.edu	37	chr5	82875916	82875916	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatggtttcattcaacgtcAccttccaactatccggtgct	7	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	82875916	82875916	A	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.9998	p.H3333P	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	192	1	0.52	195	27	12.16	-	-	-	C	82875916	A	C	82875916	3	2	232	1	0	0	0	0	1	0	0	0	17235	159	6	5	10048	5	VCAN	5	82875916	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2313869	82875916	98039344	833	16359										
EDIL3	0	genome.wustl.edu	37	chr5	83402620	83402620	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctggtttgatataattccAccttcaattcccagtgggcc	8	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	83402620	83402620	A	C	SNP	EDIL3	ENST00000296591	human	ensembl	69_37n	-1	known	silent	c.498	p.G166	0.826	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176	260	2	0.76	191	23	10.7	-	-	-	C	83402620	A	C	83402620	2	2	232	1	0	0	0	0	0	0	0	1	4950	146	6	5		5	EDIL3	5	83402620	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	526704	83402620	97512640	834	16360										
GPR98	0	genome.wustl.edu	37	chr5	89943343	89943343	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagtgagggttcaggaaggTgagactgccaactttacagt	14	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	89943343	89943343	T	G	SNP	GPR98	ENST00000504142	human	ensembl	69_37n	1	putative	nonstop	c.1816	p.*606G	0.032	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_ConA-like_lec_gl,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR98	HGNC	ENSG00000164199	171	1	0.57	102	24	18.9	-	-	-	G	89943343	T	G	89943343	4	3	232	1	0	0	0	0	0	0	0	0	6772	1683	59	5	3117	5	GPR98	5	89943343	Nonstop_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6540723	89943343	90971917	835	16361										
ARSK	0	genome.wustl.edu	37	chr5	94936700	94936700	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgtaatgtgaatgcctccAcctacatgcttcgaactaac	7	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	94936700	94936700	A	C	SNP	ARSK	ENST00000380009	human	ensembl	69_37n	1	known	missense	c.1246	p.T416P	0.542	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	271	0	0	171	26	13.2	-	-	-	C	94936700	A	C	94936700	3	2	232	1	0	0	0	0	1	0	0	0	1000	159	6	5	1272	5	ARSK	5	94936700	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4993357	94936700	85978560	836	16362										
ERAP1	0	genome.wustl.edu	37	chr5	96124326	96124326	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgatggttattaggggaaaAcccttctgcagtgtccaagt	12	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	96124326	96124326	A	C	SNP	ERAP1	ENST00000296754	human	ensembl	69_37n	-1	known	silent	c.1587	p.G529	0.992	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	111	1	0.89	128	18	12.33	-	-	-	C	96124326	A	C	96124326	2	2	232	1	0	0	0	0	0	0	0	1	5240	30	2	5		5	ERAP1	5	96124326	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1187626	96124326	84790934	837	16363										
RGMB	0	genome.wustl.edu	37	chr5	98115353	98115353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcgtgtccctgacttctcAcctgaactctgccgttgacg	8	15	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	98115353	98115353	A	C	SNP	RGMB	ENST00000308234	human	ensembl	69_37n	1	known	missense	c.329	p.H110P	1.000	pfam_RGM_N	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136	242	0	0	176	27	13.3	-	-	-	C	98115353	A	C	98115353	3	2	232	1	0	0	0	0	1	0	0	0	13364	159	6	5	339	5	RGMB	5	98115353	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1991027	98115353	82799907	838	16364										
SLCO6A1	0	genome.wustl.edu	37	chr5	101795438	101795438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaaaagaaaattaatccAccaagtccatagccattctg	6	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	101795438	101795438	A	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	69_37n	-1	known	missense	c.943	p.W315G	0.997	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	198	2	1	179	36	16.74	-	-	-	C	101795438	A	C	101795438	3	2	232	1	0	0	0	0	1	0	0	0	14821	159	6	5	1252	5	SLCO6A1	5	101795438	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3680085	101795438	79119822	839	16365										
MAN2A1	0	genome.wustl.edu	37	chr5	109091066	109091066	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcttgaaattgtgacaggTggctgggttatgcctgatga	14	6	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	109091066	109091066	T	G	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	silent	c.744	p.G248	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	186	1	0.53	132	20	13.07	-	-	-	G	109091066	T	G	109091066	2	3	232	1	0	0	0	0	0	0	0	1	9285	1683	59	5		5	MAN2A1	5	109091066	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7295628	109091066	71824194	840	16366										
APC	0	genome.wustl.edu	37	chr5	112154664	112154664	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaactcatttggcccacaggTggaaatggtgtattcattgt	10	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	112154664	112154664	T	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.935	p.V312G	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	193	0	0	141	17	10.76	-	-	-	G	112154664	T	G	112154664	3	3	232	1	0	0	0	0	1	0	0	0	764	1710	59	5	969	5	APC	5	112154664	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3063598	112154664	68760596	841	16367										
MCC	0	genome.wustl.edu	37	chr5	112406842	112406842	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattggattcgtattttcccAccagcatgctcatcctctcg	6	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	112406842	112406842	A	C	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	missense	c.1304	p.V435G	1.000	pfam_USH1C-bd_PDZ_domain	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	263	0	0	201	30	12.99	-	-	-	C	112406842	A	C	112406842	3	2	232	1	0	0	0	0	1	0	0	0	9444	159	6	5	1217	5	MCC	5	112406842	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	252178	112406842	68508418	842	16368										
MCC	0	genome.wustl.edu	37	chr5	112437573	112437573	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagccagctccttctcccAccgagacctctcttcagcca	5	21	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	112437573	112437573	A	C	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	missense	c.691	p.W231G	0.996	superfamily_tRNA-bd_arm	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	202	1	0.49	139	21	13.12	-	-	-	C	112437573	A	C	112437573	3	2	232	1	0	0	0	0	1	0	0	0	9444	159	6	5	1846	5	MCC	5	112437573	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	30731	112437573	68477687	843	16369										
YTHDC2	0	genome.wustl.edu	37	chr5	112901617	112901617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaagcacgaagtgatgggTgggagcgagccttttgtgaa	15	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	112901617	112901617	T	G	SNP	YTHDC2	ENST00000161863	human	ensembl	69_37n	1	known	missense	c.2743	p.W915G	1.000	NULL	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188	219	1	0.45	126	35	21.74	-	-	-	G	112901617	T	G	112901617	3	3	232	1	0	0	0	0	1	0	0	0	17594	1696	59	5	2825	5	YTHDC2	5	112901617	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	464044	112901617	68013643	844	16370										
FEM1C	0	genome.wustl.edu	37	chr5	114878898	114878898	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatttaacaaggactggaccAccttcagatgtcctgctgca	9	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	114878898	114878898	A	C	SNP	FEM1C	ENST00000274457	human	ensembl	69_37n	-1	known	missense	c.293	p.V98G	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780	77	0	0	39	12	23.53	-	-	-	C	114878898	A	C	114878898	3	2	232	1	0	0	0	0	1	0	0	0	5857	159	6	5	1568	5	FEM1C	5	114878898	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1977281	114878898	66036362	845	16371										
SEMA6A	0	genome.wustl.edu	37	chr5	115782889	115782889	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctccagcgccatctgggccAcctcgctcattttgggctgg	11	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	115782889	115782889	A	C	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.2564	p.V855G	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	190	0	0	193	37	16.02	-	-	-	C	115782889	A	C	115782889	3	2	232	1	0	0	0	0	1	0	0	0	14127	159	6	5	583	5	SEMA6A	5	115782889	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	903991	115782889	65132371	846	16372										
SEMA6A	0	genome.wustl.edu	37	chr5	115813553	115813553	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgcctacctgctgttgggTgataaatggctgcaggcacc	13	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	115813553	115813553	T	G	SNP	SEMA6A	ENST00000515129	human	ensembl	69_37n	-1	putative	missense	c.347	p.H116P	0.505	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEMA6A	HGNC	ENSG00000092421	166	1	0.6	160	26	13.98	-	-	-	G	115813553	T	G	115813553	3	3	232	1	0	0	0	0	1	0	0	0	14127	1683	59	5	1474	5	SEMA6A	5	115813553	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	30664	115813553	65101707	847	16373										
DMXL1	0	genome.wustl.edu	37	chr5	118485161	118485161	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttctgtagatggctccccAccttttcctgtttctttatc	5	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	118485161	118485161	A	C	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	silent	c.3639	p.P1213	0.968	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	284	0	0	142	26	15.38	-	-	-	C	118485161	A	C	118485161	2	2	232	1	0	0	0	0	0	0	0	1	4630	146	6	5		5	DMXL1	5	118485161	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2671608	118485161	62430099	848	16374										
DMXL1	0	genome.wustl.edu	37	chr5	118487625	118487625	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccctttctcccattgcaggTggagaaactcttgatgaatg	9	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	118487625	118487625	T	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	silent	c.4596	p.G1532	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	196	1	0.51	121	22	15.28	-	-	-	G	118487625	T	G	118487625	2	3	232	1	0	0	0	0	0	0	0	1	4630	1710	59	5		5	DMXL1	5	118487625	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2464	118487625	62427635	849	16375										
SRFBP1	0	genome.wustl.edu	37	chr5	121356235	121356235	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgatagcacagaagaaaggTtttacaagcagtcttccatg	9	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	121356235	121356235	T	G	SNP	SRFBP1	ENST00000339397	human	ensembl	69_37n	1	known	missense	c.805	p.F269V	1.000	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304	265	0	0	249	34	12.01	-	-	-	G	121356235	T	G	121356235	3	3	232	1	0	0	0	0	1	0	0	0	15235	1725	60	5	827	5	SRFBP1	5	121356235	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2868610	121356235	59559025	850	16376										
SNCAIP	0	genome.wustl.edu	37	chr5	121787259	121787259	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagacagatgccaagggaaAccctgccagctccgctagca	11	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	121787259	121787259	A	C	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.2858	p.N953T	0.615	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	229	1	0.43	119	38	24.2	-	-	-	C	121787259	A	C	121787259	3	2	232	1	0	0	0	0	1	0	0	0	14930	43	2	5	2751	5	SNCAIP	5	121787259	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	431024	121787259	59128001	851	16377										
PRRC1	0	genome.wustl.edu	37	chr5	126860371	126860371	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgcagttccttctgtcccAccacttgttacttctatgcc	5	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	126860371	126860371	A	C	SNP	PRRC1	ENST00000512635	human	ensembl	69_37n	1	known	silent	c.252	p.P84	0.005	NULL	pfam_DUF84	-	no_errors	PRRC1	HGNC	ENSG00000164244	382	1	0.26	368	42	10.22	-	-	-	C	126860371	A	C	126860371	2	2	232	1	0	0	0	0	0	0	0	1	12684	146	6	5		5	PRRC1	5	126860371	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5073112	126860371	54054889	852	16378										
SLC12A2	0	genome.wustl.edu	37	chr5	127522269	127522269	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctctatctaaggacctaccAccaatcctcctagttcgtgg	7	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	127522269	127522269	A	C	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	1	known	silent	c.3585	p.P1195	0.902	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	259	0	0	215	30	12.24	-	-	-	C	127522269	A	C	127522269	2	2	232	1	0	0	0	0	0	0	0	1	14472	146	6	5		5	SLC12A2	5	127522269	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	661898	127522269	53392991	853	16379										
SLC22A4	0	genome.wustl.edu	37	chr5	131647885	131647885	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtgaggacaactggaaggTgcccctcaccacctccctgt	11	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	131647885	131647885	T	G	SNP	SLC22A4	ENST00000200652	human	ensembl	69_37n	1	known	missense	c.425	p.V142G	0.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208	90	0	0	75	19	20	-	-	-	G	131647885	T	G	131647885	3	3	232	1	0	0	0	0	1	0	0	0	14545	1696	59	5	431	5	SLC22A4	5	131647885	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4125616	131647885	49267375	854	16380										
KIF3A	0	genome.wustl.edu	37	chr5	132052056	132052056	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaaattacattaccaagggTggaaagtgaaagattgattt	10	3	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	132052056	132052056	T	G	SNP	KIF3A	ENST00000378735	human	ensembl	69_37n	-1	known	missense	c.835	p.T279P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	146	0	0	147	23	13.29	-	-	-	G	132052056	T	G	132052056	3	3	232	1	0	0	0	0	1	0	0	0	8352	1696	59	5	1308	5	KIF3A	5	132052056	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	404171	132052056	48863204	855	16381										
SEPT8	0	genome.wustl.edu	37	chr5	132097264	132097264	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcggaggtcttccatgttcAcccggatcaacatctcccgc	9	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	132097264	132097264	A	C	SNP	SEPT8	ENST00000378719	human	ensembl	69_37n	-1	known	missense	c.848	p.V283G	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402	64	0	0	45	13	22.41	-	-	-	C	132097264	A	C	132097264	3	2	232	1	0	0	0	0	1	0	0	0	14158	159	6	5	674	5	SEPT8	5	132097264	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	45208	132097264	48817996	856	16382										
AFF4	0	genome.wustl.edu	37	chr5	132270040	132270040	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactttgacatcaatgagggTgggaaagattgagttgagtg	15	3	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	132270040	132270040	T	G	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	silent	c.717	p.P239	0.966	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	142	0	0	113	27	19.29	-	-	-	G	132270040	T	G	132270040	2	3	232	1	0	0	0	0	0	0	0	1	359	1683	59	5		5	AFF4	5	132270040	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	172776	132270040	48645220	857	16383										
VDAC1	0	genome.wustl.edu	37	chr5	133311581	133311581	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgagaagcaggcgtcagggTcaatctgatacttggctgct	13	10	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	133311581	133311581	T	G	SNP	VDAC1	ENST00000265333	human	ensembl	69_37n	-1	known	missense	c.683	p.D228A	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC1	HGNC	ENSG00000213585	143	0	0	170	29	14.57	-	-	-	G	133311581	T	G	133311581	3	3	232	1	0	0	0	0	1	0	0	0	17243	1667	58	5	180	5	VDAC1	5	133311581	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1041541	133311581	47603679	858	16384										
SMAD5	0	genome.wustl.edu	37	chr5	135496674	135496674	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacgtttccagattctttccAccagcccaacaacactcctt	3	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	135496674	135496674	A	C	SNP	SMAD5	ENST00000545279	human	ensembl	69_37n	1	known	missense	c.533	p.H178P	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD5	HGNC	ENSG00000113658	701	0	0	534	87	13.99	-	-	-	C	135496674	A	C	135496674	3	2	232	1	0	0	0	0	1	0	0	0	14850	159	6	5	539	5	SMAD5	5	135496674	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2185093	135496674	45418586	859	16385										
EGR1	0	genome.wustl.edu	37	chr5	137802702	137802702	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctccgcctcccagagcccAcccctgagctgcgcagtgcc	10	21	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	137802702	137802702	A	C	SNP	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	silent	c.564	p.P188	1.000	pfam_DUF3446	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	115	1	0.86	58	14	19.44	-	-	-	C	137802702	A	C	137802702	2	2	232	1	0	0	0	0	0	0	0	1	5006	146	6	5		5	EGR1	5	137802702	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2306028	137802702	43112558	860	16386										
CTNNA1	0	genome.wustl.edu	37	chr5	138266214	138266214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcgaagattgcggaacaggTggccagcttccaggaagaaa	14	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	138266214	138266214	T	G	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	missense	c.2063	p.V688G	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	154	1	0.65	120	20	14.29	-	-	-	G	138266214	T	G	138266214	3	3	232	1	0	0	0	0	1	0	0	0	4044	1696	59	5	2117	5	CTNNA1	5	138266214	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	463512	138266214	42649046	861	16387										
MATR3	0	genome.wustl.edu	37	chr5	138661011	138661011	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccagggagtatggaaggTtttgtcactctagatgaggt	13	5	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	138661011	138661011	T	G	SNP	MATR3	ENST00000394800	human	ensembl	69_37n	1	novel	silent	c.2175	p.G725	1.000	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	MATR3	HGNC	ENSG00000015479	47	0	0	40	12	23.08	-	-	-	G	138661011	T	G	138661011	2	3	232	1	0	0	0	0	0	0	0	1	9408	1740	60	5		5	MATR3	5	138661011	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	394797	138661011	42254249	862	16388										
ANKHD1	0	genome.wustl.edu	37	chr5	139885379	139885379	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaatccttttggataaaggTggagatatagaagcacagtc	11	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	139885379	139885379	T	G	SNP	ANKHD1	ENST00000246149	human	ensembl	69_37n	1	novel	missense	c.1010	p.V337G	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKHD1	HGNC	ENSG00000131503	206	0	0	190	35	15.42	-	-	-	G	139885379	T	G	139885379	3	3	232	1	0	0	0	0	1	0	0	0	628	1683	59	5	3509	5	ANKHD1	5	139885379	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1224368	139885379	41029881	863	16389										
HARS	0	genome.wustl.edu	37	chr5	140056700	140056700	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttccaccagggataccccAcctggggagacagacttgtg	12	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140056700	140056700	A	C	SNP	HARS	ENST00000504156	human	ensembl	69_37n	-1	known	silent	c.825	p.G275	1.000	pirsf_His-tRNA_synth_IIA,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-synth_IIa_subgr	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_His-tRNA_synth_IIA,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-synth_IIa_subgr	-	no_errors	HARS	HGNC	ENSG00000170445	211	1	0.47	149	24	13.87	-	-	-	C	140056700	A	C	140056700	2	2	232	1	0	0	0	0	0	0	0	1	7010	173	6	5		5	HARS	5	140056700	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	171321	140056700	40858560	864	16390										
PCDHB1	0	genome.wustl.edu	37	chr5	140432342	140432342	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgccatggatactggaccAcctagcttgtctgccgagac	11	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140432342	140432342	A	C	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	silent	c.1287	p.P429	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	136	0	0	118	22	15.71	-	-	-	C	140432342	A	C	140432342	2	2	232	1	0	0	0	0	0	0	0	1	11607	146	6	5		5	PCDHB1	5	140432342	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	375642	140432342	40482918	865	16391										
PCDHB5	0	genome.wustl.edu	37	chr5	140516055	140516055	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgacaacgcccctgaactcAccatgtctacgctctccagc	6	17	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140516055	140516055	A	C	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	missense	c.1039	p.T347P	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	275	1	0.36	212	27	11.25	-	-	-	C	140516055	A	C	140516055	3	2	232	1	0	0	0	0	1	0	0	0	11618	159	6	5	1041	5	PCDHB5	5	140516055	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83713	140516055	40399205	866	16392										
PCDHB6	0	genome.wustl.edu	37	chr5	140530343	140530343	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcaacggccttcagaggTacacaatcagctccaaccct	8	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140530343	140530343	T	G	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.505	p.Y169D	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	325	2	0.61	229	48	17.08	-	-	-	G	140530343	T	G	140530343	3	3	232	1	0	0	0	0	1	0	0	0	11619	1638	57	5	507	5	PCDHB6	5	140530343	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	14288	140530343	40384917	867	16393										
PCDHB6	0	genome.wustl.edu	37	chr5	140531367	140531367	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcaacgcggacaacggccAcctgtttgccctcaggtcgc	10	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140531367	140531367	A	C	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.1529	p.H510P	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	248	2	0.8	157	31	16.49	-	-	-	C	140531367	A	C	140531367	3	2	232	1	0	0	0	0	1	0	0	0	11619	159	6	5	1531	5	PCDHB6	5	140531367	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1024	140531367	40383893	868	16394										
PCDHB11	0	genome.wustl.edu	37	chr5	140579544	140579544	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcctcacggggggctcgggTggtctctaatgataagaaac	14	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140579544	140579544	T	G	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.197	p.V66G	0.021	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	128	1	0.78	96	24	20	-	-	-	G	140579544	T	G	140579544	3	3	232	1	0	0	0	0	1	0	0	0	11609	1696	59	5	199	5	PCDHB11	5	140579544	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	48177	140579544	40335716	869	16395										
PCDHB11	0	genome.wustl.edu	37	chr5	140580036	140580036	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggaactgccttggtcagggTggtggttgtggacattaatg	16	5	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140580036	140580036	T	G	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.689	p.V230G	0.033	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	163	1	0.6	103	27	20.61	-	-	-	G	140580036	T	G	140580036	3	3	232	1	0	0	0	0	1	0	0	0	11609	1696	59	5	691	5	PCDHB11	5	140580036	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	492	140580036	40335224	870	16396										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720358	140720358	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacgcctggctgtcttaccAcctgctcaaggccagcgagc	11	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140720358	140720358	A	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.1820	p.H607P	0.492	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	137	1	0.71	123	23	15.75	-	-	-	C	140720358	A	C	140720358	3	2	232	1	0	0	0	0	1	0	0	0	11627	159	6	5	1822	5	PCDHGA2	5	140720358	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	140322	140720358	40194902	871	16397										
PCDHGA5	0	genome.wustl.edu	37	chr5	140745244	140745244	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagacgttaatgacaacccAcccaatttccctcaagcctc	5	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140745244	140745244	A	C	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	silent	c.1347	p.P449	0.008	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	175	1	0.57	150	26	14.77	-	-	-	C	140745244	A	C	140745244	2	2	232	1	0	0	0	0	0	0	0	1	11630	146	6	5		5	PCDHGA5	5	140745244	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24886	140745244	40170016	872	16398										
PCDHGA6	0	genome.wustl.edu	37	chr5	140755001	140755001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccaacgacaacccgcccAccttcccccattcatcctac	2	22	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140755001	140755001	A	C	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	missense	c.1351	p.T451P	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	170	0	0	136	20	12.74	-	-	-	C	140755001	A	C	140755001	3	2	232	1	0	0	0	0	1	0	0	0	11631	159	6	5	1353	5	PCDHGA6	5	140755001	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9757	140755001	40160259	873	16399										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789084	140789084	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcttccagtagaagcatcAccttgtatgtcgctgacatc	7	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140789084	140789084	A	C	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.1315	p.T439P	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	61	0	0	40	12	22.64	-	-	-	C	140789084	A	C	140789084	3	2	232	1	0	0	0	0	1	0	0	0	11640	159	6	5	1317	5	PCDHGB6	5	140789084	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34083	140789084	40126176	874	16400										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801420	140801420	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgagagaaagaggctgctcAcctgctcctcctcacagctt	9	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140801420	140801420	A	C	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.626	p.H209P	0.138	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	71	0	0	37	5	11.9	-	-	-	C	140801420	A	C	140801420	3	2	232	1	0	0	0	0	1	0	0	0	11625	159	6	5	628	5	PCDHGA11	5	140801420	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12336	140801420	40113840	875	16401										
PCDHGA12	0	genome.wustl.edu	37	chr5	140810460	140810460	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggagaaaggctctagggTgggcgacatctccagggacc	16	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140810460	140810460	T	G	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	missense	c.134	p.V45G	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	66	0	0	48	13	21.31	-	-	-	G	140810460	T	G	140810460	3	3	232	1	0	0	0	0	1	0	0	0	11626	1696	59	5	136	5	PCDHGA12	5	140810460	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9040	140810460	40104800	876	16402										
PCDHGC3	0	genome.wustl.edu	37	chr5	140856514	140856514	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggatgaaggccccaacggTgaaattatttactccttcgg	10	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140856514	140856514	T	G	SNP	PCDHGC3	ENST00000308177	human	ensembl	69_37n	1	known	silent	c.831	p.G277	0.367	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184	66	0	0	85	20	18.87	-	-	-	G	140856514	T	G	140856514	2	3	232	1	0	0	0	0	0	0	0	1	11642	1683	59	5		5	PCDHGC3	5	140856514	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	46054	140856514	40058746	877	16403										
PCDHGC4	0	genome.wustl.edu	37	chr5	140866369	140866369	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccgggatcggggcaacccAccccttagcagcactgtaac	11	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140866369	140866369	A	C	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	silent	c.1629	p.P543	0.899	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	210	2	0.94	126	29	18.71	-	-	-	C	140866369	A	C	140866369	2	2	232	1	0	0	0	0	0	0	0	1	11643	146	6	5		5	PCDHGC4	5	140866369	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9855	140866369	40048891	878	16404										
PCDHGC5	0	genome.wustl.edu	37	chr5	140870230	140870230	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccgggctcccttctttgcActgtggctgcctcagatcca	9	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140870230	140870230	A	C	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	missense	c.1423	p.T475P	0.955	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	384	2	0.52	172	22	11.34	-	-	-	C	140870230	A	C	140870230	3	2	232	1	0	0	0	0	1	0	0	0	11644	159	6	5	1425	5	PCDHGC5	5	140870230	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3861	140870230	40045030	879	16405										
PCDHGC5	0	genome.wustl.edu	37	chr5	140870878	140870878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctgagcgttcagaccttAccctttacctcattgtggct	7	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140870878	140870878	A	C	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	missense	c.2071	p.T691P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	235	2	0.84	106	14	11.57	-	-	-	C	140870878	A	C	140870878	3	2	232	1	0	0	0	0	1	0	0	0	11644	391	14	5	2073	5	PCDHGC5	5	140870878	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	648	140870878	40044382	880	16406										
DIAPH1	0	genome.wustl.edu	37	chr5	140960328	140960328	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacatgtcctctggctgcggTagaatacaaagagcagaaag	11	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	140960328	140960328	T	G	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	silent	c.807	p.L269	0.989	superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	230	0	0	180	27	12.98	-	-	-	G	140960328	T	G	140960328	2	3	232	1	0	0	0	0	0	0	0	1	4554	1625	57	5		5	DIAPH1	5	140960328	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	89450	140960328	39954932	881	16407										
ARAP3	0	genome.wustl.edu	37	chr5	141041273	141041273	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atagagatgcccaatgagggTggccagtgtgcggcggttga	17	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141041273	141041273	T	G	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.3097	p.T1033P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	143	1	0.68	101	23	18.4	-	-	-	G	141041273	T	G	141041273	3	3	232	1	0	0	0	0	1	0	0	0	842	1696	59	5	1589	5	ARAP3	5	141041273	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	80945	141041273	39873987	882	16408										
PCDH1	0	genome.wustl.edu	37	chr5	141243817	141243817	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacgtaagctgagcgaggTgggacgccaccatccactgc	12	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141243817	141243817	T	G	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	silent	c.2079	p.P693	0.849	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	112	1	0.88	122	28	18.67	-	-	-	G	141243817	T	G	141243817	2	3	232	1	0	0	0	0	0	0	0	1	11579	1683	59	5		5	PCDH1	5	141243817	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	202544	141243817	39671443	883	16409										
PCDH1	0	genome.wustl.edu	37	chr5	141244740	141244740	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgccccggatctcaatggTgggggcattgtcattcatgt	12	9	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141244740	141244740	T	G	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	missense	c.1156	p.T386P	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	202	2	0.98	209	30	12.55	-	-	-	G	141244740	T	G	141244740	3	3	232	1	0	0	0	0	1	0	0	0	11579	1696	59	5	2653	5	PCDH1	5	141244740	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	923	141244740	39670520	884	16410										
KIAA0141	0	genome.wustl.edu	37	chr5	141309165	141309165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcactgcgacaacacatccTccccagccccgatggcccag	8	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141309165	141309165	T	C	SNP	KIAA0141	ENST00000194118	human	ensembl	69_37n	1	known	missense	c.431	p.L144P	0.994	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791	34	0	0	41	10	19.61	-	-	-	C	141309165	T	C	141309165	3	2	232	1	0	0	0	0	1	0	0	0	8208	1551	54	5	449	5	KIAA0141	5	141309165	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	64425	141309165	39606095	885	16411										
KIAA0141	0	genome.wustl.edu	37	chr5	141318278	141318278	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcagggctattcccccacAcccctacccactggaaagga	8	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141318278	141318278	A	C	SNP	KIAA0141	ENST00000194118	human	ensembl	69_37n	1	known	missense	c.1502	p.H501P	0.000	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791	250	1	0.4	174	36	17.14	-	-	-	C	141318278	A	C	141318278	3	2	232	1	0	0	0	0	1	0	0	0	8208	159	6	5	1548	5	KIAA0141	5	141318278	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9113	141318278	39596982	886	16412										
RNF14	0	genome.wustl.edu	37	chr5	141354478	141354478	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gattatccatcctcttccccAccttcattcacacttagtgg	4	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	141354478	141354478	A	C	SNP	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	silent	c.264	p.P88	0.993	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	187	0	0	178	40	18.18	-	-	-	C	141354478	A	C	141354478	2	2	232	1	0	0	0	0	0	0	0	1	13529	146	6	5		5	RNF14	5	141354478	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36200	141354478	39560782	887	16413										
SH3RF2	0	genome.wustl.edu	37	chr5	145393577	145393577	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcaacccctctgtgatcAcccagcccatggagaaagca	8	16	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	145393577	145393577	A	C	SNP	SH3RF2	ENST00000359120	human	ensembl	69_37n	1	known	missense	c.1012	p.T338P	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING	-	no_errors	SH3RF2	HGNC	ENSG00000156463	486	2	0.41	434	70	13.86	-	-	-	C	145393577	A	C	145393577	3	2	232	1	0	0	0	0	1	0	0	0	14348	159	6	5	1026	5	SH3RF2	5	145393577	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4039099	145393577	35521683	888	16414										
LARS	0	genome.wustl.edu	37	chr5	145562183	145562183	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactaaagcacacgcttcacAcctgctgaggcaatcatccg	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	145562183	145562183	A	C	SNP	LARS	ENST00000505223	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LARS	HGNC	ENSG00000133706	44	0	0	32	9	21.95	-	-	-	C	145562183	A	C	145562183	1	2	232	0	1	0	0	0	0	0	0	0	8688	174	6	5		5	LARS	5	145562183	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	168606	145562183	35353077	889	16415										
TCERG1	0	genome.wustl.edu	37	chr5	145843228	145843228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaaaccgttccccagccgcAccctcagacgttacctcctg	7	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	145843228	145843228	A	C	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	missense	c.1007	p.H336P	0.998	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	253	1	0.39	195	45	18.67	-	-	-	C	145843228	A	C	145843228	3	2	232	1	0	0	0	0	1	0	0	0	15780	159	6	5	1025	5	TCERG1	5	145843228	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	281045	145843228	35072032	890	16416										
TCERG1	0	genome.wustl.edu	37	chr5	145843286	145843286	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcagccaacaacagcaatAcctgcttttccaccagtaat	4	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	145843286	145843286	A	C	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	silent	c.1065	p.I355	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	286	1	0.35	198	24	10.81	-	-	-	C	145843286	A	C	145843286	2	2	232	1	0	0	0	0	0	0	0	1	15780	381	14	5		5	TCERG1	5	145843286	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	58	145843286	35071974	891	16417										
JAKMIP2	0	genome.wustl.edu	37	chr5	147040935	147040935	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttgagttctgtcaccagcAccgtgtgcttgcgctgctcc	10	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	147040935	147040935	A	C	SNP	JAKMIP2	ENST00000265272	human	ensembl	69_37n	-1	known	missense	c.203	p.V68G	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049	281	0	0	292	44	13.02	-	-	-	C	147040935	A	C	147040935	3	2	232	1	0	0	0	0	1	0	0	0	7995	159	6	5	2305	5	JAKMIP2	5	147040935	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1197649	147040935	33874325	892	16418										
SH3TC2	0	genome.wustl.edu	37	chr5	148406644	148406644	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaggacttaaggctcaggTggccaagattggccatagcc	12	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	148406644	148406644	T	G	SNP	SH3TC2	ENST00000515425	human	ensembl	69_37n	-1	known	missense	c.2651	p.H884P	0.608	NULL	pfam_SH3_domain,pfam_TPR-1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247	172	0	0	100	20	16.53	-	-	-	G	148406644	T	G	148406644	3	3	232	1	0	0	0	0	1	0	0	0	14351	1696	59	5	1243	5	SH3TC2	5	148406644	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1365709	148406644	32508616	893	16419										
ABLIM3	0	genome.wustl.edu	37	chr5	148577935	148577935	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccctgggccgcacttaccAccccaagtgcttcgtgtgca	11	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	148577935	148577935	A	C	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	missense	c.305	p.H102P	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	83	0	0	404	145	26.17	-	-	-	C	148577935	A	C	148577935	3	2	232	1	0	0	0	0	1	0	0	0	96	159	6	5	315	5	ABLIM3	5	148577935	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	171291	148577935	32337325	894	16420										
PDE6A	0	genome.wustl.edu	37	chr5	149276326	149276326	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccatggctccttcccatacAcctctctggttttctgccag	6	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149276326	149276326	A	C	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	missense	c.1421	p.V474G	0.344	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	262	0	0	173	29	14.36	-	-	-	C	149276326	A	C	149276326	3	2	232	1	0	0	0	0	1	0	0	0	11718	159	6	5	1209	5	PDE6A	5	149276326	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	698391	149276326	31638934	895	16421										
CSF1R	0	genome.wustl.edu	37	chr5	149452912	149452912	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagcttgggctcaggctggTggtcagaaaagggtcccagg	16	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149452912	149452912	T	G	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	missense	c.1034	p.H345P	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	CSF1R	HGNC	ENSG00000182578	340	0	0	343	49	12.47	-	-	-	G	149452912	T	G	149452912	3	3	232	1	0	0	0	0	1	0	0	0	3964	1696	59	5	1948	5	CSF1R	5	149452912	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	176586	149452912	31462348	896	16422										
SLC6A7	0	genome.wustl.edu	37	chr5	149580719	149580719	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggtccgcggagtcacccTcccaggggcctggaagggca	16	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149580719	149580719	T	C	SNP	SLC6A7	ENST00000230671	human	ensembl	69_37n	1	known	missense	c.791	p.L264P	0.998	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	54	0	0	100	20	16.67	-	-	-	C	149580719	T	C	149580719	3	2	232	1	0	0	0	0	1	0	0	0	14778	1551	54	5	813	5	SLC6A7	5	149580719	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	127807	149580719	31334541	897	16423										
CAMK2A	0	genome.wustl.edu	37	chr5	149633074	149633074	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgccagcttcactgcggcAcccttgagcttggaggccag	12	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149633074	149633074	A	C	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	silent	c.447	p.G149	0.777	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	68	0	0	46	19	29.23	-	-	-	C	149633074	A	C	149633074	2	2	232	1	0	0	0	0	0	0	0	1	2624	146	6	5		5	CAMK2A	5	149633074	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	52355	149633074	31282186	898	16424										
CAMK2A	0	genome.wustl.edu	37	chr5	149636385	149636385	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atatcttcaaacagttccccAccagtgaccctggggagaca	8	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149636385	149636385	A	C	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	silent	c.282	p.G94	0.618	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	34	0	0	25	5	16.67	-	-	-	C	149636385	A	C	149636385	2	2	232	1	0	0	0	0	0	0	0	1	2624	146	6	5		5	CAMK2A	5	149636385	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3311	149636385	31278875	899	16425										
RPS14	0	genome.wustl.edu	37	chr5	149826502	149826502	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgcctttaccttcatcccAccagtcacacggcagatggt	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	149826502	149826502	A	C	SNP	RPS14	ENST00000312037	human	ensembl	69_37n	-1	known	silent	c.174	p.G58	1.000	pfam_Ribosomal_S11,pirsf_Ribosomal_S11	pfam_Ribosomal_S11,pirsf_Ribosomal_S11	-	no_errors	RPS14	HGNC	ENSG00000164587	108	1	0.92	137	28	16.97	-	-	-	C	149826502	A	C	149826502	2	2	232	1	0	0	0	0	0	0	0	1	13710	146	6	5		5	RPS14	5	149826502	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	190117	149826502	31088758	900	16426										
SYNPO	0	genome.wustl.edu	37	chr5	150028243	150028243	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcctgcttccaaacccagcAccctgtgtgctgatgggcaa	11	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150028243	150028243	A	C	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	missense	c.1138	p.T380P	0.479	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	393	3	0.75	277	48	14.63	-	-	-	C	150028243	A	C	150028243	3	2	232	1	0	0	0	0	1	0	0	0	15548	159	6	5	1144	5	SYNPO	5	150028243	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	201741	150028243	30887017	901	16427										
C5orf62	0	genome.wustl.edu	37	chr5	150175090	150175090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtcctcatcatcctggccAccattgtcatcatgacctcg	6	15	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150175090	150175090	A	C	SNP	C5orf62	ENST00000526627	human	ensembl	69_37n	1	known	missense	c.88	p.T30P	1.000	NULL	NULL	-	no_errors	C5orf62	HGNC	ENSG00000256235	79	0	0	70	14	16.67	-	-	-	C	150175090	A	C	150175090	3	2	232	1	0	0	0	0	1	0	0	0	2335	159	6	5	90	5	C5orf62	5	150175090	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	146847	150175090	30740170	902	16428										
CCDC69	0	genome.wustl.edu	37	chr5	150578644	150578644	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctagctccctttccttctccAcctgggggcagagagtcccg	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150578644	150578644	A	C	SNP	CCDC69	ENST00000355417	human	ensembl	69_37n	-1	known	missense	c.233	p.V78G	1.000	NULL	superfamily_ER_p29_C	-	no_errors	CCDC69	HGNC	ENSG00000198624	137	1	0.72	149	38	20.32	-	-	-	C	150578644	A	C	150578644	3	2	232	1	0	0	0	0	1	0	0	0	2868	173	6	5	681	5	CCDC69	5	150578644	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	403554	150578644	30336616	903	16429										
SLC36A3	0	genome.wustl.edu	37	chr5	150656999	150656999	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccatggaatggctgatgggTtggggcaactcatagagggc	17	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150656999	150656999	T	G	SNP	SLC36A3	ENST00000377713	human	ensembl	69_37n	-1	known	missense	c.1491	p.Q497H	0.001	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A3	HGNC	ENSG00000186334	233	2	0.85	244	42	14.69	-	-	-	G	150656999	T	G	150656999	3	3	232	1	0	0	0	0	1	0	0	0	14684	1722	60	5	48	5	SLC36A3	5	150656999	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	78355	150656999	30258261	904	16430										
SLC36A1	0	genome.wustl.edu	37	chr5	150856195	150856195	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggatcctcggaagttcccActcatcctgtacctgggcat	9	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150856195	150856195	A	C	SNP	SLC36A1	ENST00000522185	human	ensembl	69_37n	1	known	missense	c.46	p.T16P	0.001	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC36A1	HGNC	ENSG00000123643	192	1	0.52	171	22	11.4	-	-	-	C	150856195	A	C	150856195	3	2	232	1	0	0	0	0	1	0	0	0	14682	146	6	5	897	5	SLC36A1	5	150856195	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	199196	150856195	30059065	905	16431										
SLC36A1	0	genome.wustl.edu	37	chr5	150867632	150867632	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccctggccctcatcatcccAccgctcctggaggtcaccac	8	20	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150867632	150867632	A	C	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	silent	c.1248	p.P416	0.232	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	106	0	0	62	14	18.42	-	-	-	C	150867632	A	C	150867632	2	2	232	1	0	0	0	0	0	0	0	1	14682	146	6	5		5	SLC36A1	5	150867632	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11437	150867632	30047628	906	16432										
SLC36A1	0	genome.wustl.edu	37	chr5	150867651	150867651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccgctcctggaggtcaccAccttctactcagagggcatg	10	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150867651	150867651	A	C	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	missense	c.1267	p.T423P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	101	0	0	56	14	20	-	-	-	C	150867651	A	C	150867651	3	2	232	1	0	0	0	0	1	0	0	0	14682	159	6	5	1305	5	SLC36A1	5	150867651	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19	150867651	30047609	907	16433										
FAT2	0	genome.wustl.edu	37	chr5	150901505	150901505	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtggcatggatcttacccAccatgccaccctggaactca	8	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150901505	150901505	A	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.10649	p.V3550G	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	45	0	0	46	14	23.33	-	-	-	C	150901505	A	C	150901505	3	2	232	1	0	0	0	0	1	0	0	0	5736	159	6	5	2424	5	FAT2	5	150901505	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	33854	150901505	30013755	908	16434										
FAT2	0	genome.wustl.edu	37	chr5	150923189	150923189	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctatggctagcaaatcaatcAccttggttccaaccattgca	6	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150923189	150923189	A	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.7499	p.V2500G	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	227	0	0	174	33	15.79	-	-	-	C	150923189	A	C	150923189	3	2	232	1	0	0	0	0	1	0	0	0	5736	159	6	5	5610	5	FAT2	5	150923189	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21684	150923189	29992071	909	16435										
FAT2	0	genome.wustl.edu	37	chr5	150924613	150924613	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctcccggtcaaacgccacAcctcttgtctgcaacacacc	6	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	150924613	150924613	A	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.6075	p.G2025	0.294	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	229	2	0.86	211	31	12.81	-	-	-	C	150924613	A	C	150924613	2	2	232	1	0	0	0	0	0	0	0	1	5736	146	6	5		5	FAT2	5	150924613	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1424	150924613	29990647	910	16436										
G3BP1	0	genome.wustl.edu	37	chr5	151179830	151179830	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accccgaagaatggtgagacAccctgacagtcaccaactct	8	14	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	151179830	151179830	A	C	SNP	G3BP1	ENST00000356245	human	ensembl	69_37n	1	known	missense	c.1007	p.H336P	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907	198	0	0	212	32	13.06	-	-	-	C	151179830	A	C	151179830	3	2	232	1	0	0	0	0	1	0	0	0	6190	159	6	5	1041	5	G3BP1	5	151179830	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	255217	151179830	29735430	911	16437										
MFAP3	0	genome.wustl.edu	37	chr5	153432988	153432988	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacgaccctgatgacctgggTgaaagaattaaagagagacc	12	8	0	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	153432988	153432988	T	G	SNP	MFAP3	ENST00000322602	human	ensembl	69_37n	1	known	silent	c.804	p.G268	0.787	NULL	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3	HGNC	ENSG00000037749	153	0	0	118	21	15.11	-	-	-	G	153432988	T	G	153432988	2	3	232	1	0	0	0	0	0	0	0	1	9586	1683	59	5		5	MFAP3	5	153432988	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2253158	153432988	27482272	912	16438										
GALNT10	0	genome.wustl.edu	37	chr5	153796449	153796449	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accataggatcttcatgaacAcctgcaacccatcctctctc	4	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	153796449	153796449	A	C	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	1	known	missense	c.1729	p.T577P	0.999	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	118	1	0.84	90	20	18.18	-	-	-	C	153796449	A	C	153796449	3	2	232	1	0	0	0	0	1	0	0	0	6258	159	6	5	1775	5	GALNT10	5	153796449	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	363461	153796449	27118811	913	16439										
GEMIN5	0	genome.wustl.edu	37	chr5	154304056	154304056	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtaggtgtcatacaatcccActtttccatcatcagttcca	5	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	154304056	154304056	A	C	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	missense	c.1352	p.V451G	1.000	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	187	0	0	197	28	12.39	-	-	-	C	154304056	A	C	154304056	3	2	232	1	0	0	0	0	1	0	0	0	6383	159	6	5	3254	5	GEMIN5	5	154304056	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	507607	154304056	26611204	914	16440										
HAVCR2	0	genome.wustl.edu	37	chr5	156533961	156533961	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacctccgctctgtattccActtctgaggaccctgcatag	8	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	156533961	156533961	A	C	SNP	HAVCR2	ENST00000307851	human	ensembl	69_37n	-1	known	missense	c.71	p.V24G	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	HAVCR2	HGNC	ENSG00000135077	133	0	0	144	19	11.66	-	-	-	C	156533961	A	C	156533961	3	2	232	1	0	0	0	0	1	0	0	0	7025	159	6	5	858	5	HAVCR2	5	156533961	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2229905	156533961	24381299	915	16441										
CYFIP2	0	genome.wustl.edu	37	chr5	156723682	156723682	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccccattatcccccacaggTgaaatgcaacgagcagccca	7	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	156723682	156723682	T	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.287	p.V96G	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	255	1	0.39	247	32	11.39	-	-	-	G	156723682	T	G	156723682	3	3	232	1	0	0	0	0	1	0	0	0	4169	1696	59	5	301	5	CYFIP2	5	156723682	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	189721	156723682	24191578	916	16442										
CYFIP2	0	genome.wustl.edu	37	chr5	156741353	156741353	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacacctgatgctccccaggTggtgacgggctcagggctgg	16	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	156741353	156741353	T	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.1112	p.V371G	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	102	1	0.97	103	19	15.45	-	-	-	G	156741353	T	G	156741353	3	3	232	1	0	0	0	0	1	0	0	0	4169	1710	59	5	1154	5	CYFIP2	5	156741353	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	17671	156741353	24173907	917	16443										
NIPAL4	0	genome.wustl.edu	37	chr5	156895773	156895773	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttggagcctacgcatttgcAcctgcaacagtcgtcacgcc	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	156895773	156895773	A	C	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	1	known	silent	c.564	p.A188	0.881	pfam_Mg_trans_NIPA,pfam_DMT	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	251	2	0.78	139	30	17.75	-	-	-	C	156895773	A	C	156895773	2	2	232	1	0	0	0	0	0	0	0	1	10499	146	6	5		5	NIPAL4	5	156895773	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	154420	156895773	24019487	918	16444										
NIPAL4	0	genome.wustl.edu	37	chr5	156899735	156899735	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctgtggacattgcaggcAccctctcgggctttgtcacc	11	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	156899735	156899735	A	C	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	1	known	missense	c.1168	p.T390P	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	153	1	0.65	115	22	16.06	-	-	-	C	156899735	A	C	156899735	3	2	232	1	0	0	0	0	1	0	0	0	10499	159	6	5	1190	5	NIPAL4	5	156899735	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3962	156899735	24015525	919	16445										
PTTG1	0	genome.wustl.edu	37	chr5	159854867	159854867	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgtgaagatgccctctccAccatgggaatccagtaagtg	10	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	159854867	159854867	A	C	SNP	PTTG1	ENST00000352433	human	ensembl	69_37n	1	known	silent	c.516	p.P172	0.000	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG1	HGNC	ENSG00000164611	114	0	0	119	20	14.39	-	-	-	C	159854867	A	C	159854867	2	2	232	1	0	0	0	0	0	0	0	1	12902	146	6	5		5	PTTG1	5	159854867	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2955132	159854867	21060393	920	16446										
ATP10B	0	genome.wustl.edu	37	chr5	160061397	160061397	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atactcgctgcccatgatggTgcaacgtcggaacaccatct	9	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	160061397	160061397	T	G	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1345	p.T449P	0.997	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	209	1	0.48	225	35	13.46	-	-	-	G	160061397	T	G	160061397	3	3	232	1	0	0	0	0	1	0	0	0	1121	1696	59	5	3100	5	ATP10B	5	160061397	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	206530	160061397	20853863	921	16447										
STK10	0	genome.wustl.edu	37	chr5	171520587	171520587	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccattggccagcttctccccAcccaaggtctccagggcgct	9	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	171520587	171520587	A	C	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	silent	c.1383	p.G461	0.000	NULL	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	82	0	0	90	22	19.47	-	-	-	C	171520587	A	C	171520587	2	2	232	1	0	0	0	0	0	0	0	1	15377	146	6	5		5	STK10	5	171520587	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11459190	171520587	9394673	922	16448										
ERGIC1	0	genome.wustl.edu	37	chr5	172315722	172315722	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttgacatctacaggaaggTgcccaaggaccttacgcagc	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	172315722	172315722	T	G	SNP	ERGIC1	ENST00000393784	human	ensembl	69_37n	1	known	missense	c.41	p.V14G	1.000	NULL	pfam_DUF1692	-	no_errors	ERGIC1	HGNC	ENSG00000113719	40	0	0	48	11	18.64	-	-	-	G	172315722	T	G	172315722	3	3	232	1	0	0	0	0	1	0	0	0	5260	1696	59	5	47	5	ERGIC1	5	172315722	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	795135	172315722	8599538	923	16449										
C5orf25	0	genome.wustl.edu	37	chr5	175740788	175740788	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgaggaggcaacggcagcAcctgcagcaatccattgcaa	11	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	175740788	175740788	A	C	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.1772	p.H591P	1.000	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	165	1	0.6	122	25	17.01	-	-	-	C	175740788	A	C	175740788	3	2	232	1	0	0	0	0	1	0	0	0	2309	159	6	5	541	5	C5orf25	5	175740788	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3425066	175740788	5174472	924	16450										
HK3	0	genome.wustl.edu	37	chr5	176323136	176323136	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtttcttccccctgccgcaAccctgaagacccaatggagt	9	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	176323136	176323136	A	C	SNP	HK3	ENST00000292432	human	ensembl	69_37n	-1	known	missense	c.25	p.L9V	0.000	NULL	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	114	1	0.86	140	18	11.39	-	-	-	C	176323136	A	C	176323136	3	2	232	1	0	0	0	0	1	0	0	0	7243	40	2	5	2818	5	HK3	5	176323136	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	582348	176323136	4592124	925	16451										
FGFR4	0	genome.wustl.edu	37	chr5	176520398	176520398	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcagaaccaagtctcccActttgcagttctccctggag	9	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	176520398	176520398	A	C	SNP	FGFR4	ENST00000292410	human	ensembl	69_37n	1	known	missense	c.1123	p.T375P	0.002	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867	143	1	0.68	72	9	10.98	-	-	-	C	176520398	A	C	176520398	3	2	232	1	0	0	0	0	1	0	0	0	5914	159	6	5	1347	5	FGFR4	5	176520398	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	197262	176520398	4394862	926	16452										
RGS14	0	genome.wustl.edu	37	chr5	176798517	176798517	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataaggccacccatcccccTccagcgtcccccagttctct	6	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	176798517	176798517	T	C	SNP	RGS14	ENST00000511890	human	ensembl	69_37n	1	known	missense	c.1037	p.L346P	0.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RGS14	HGNC	ENSG00000169220	103	1	0.96	35	13	27.08	-	-	-	C	176798517	T	C	176798517	3	2	232	1	0	0	0	0	1	0	0	0	13381	1538	54	5	1479	5	RGS14	5	176798517	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	278119	176798517	4116743	927	16453										
COL23A1	0	genome.wustl.edu	37	chr5	177686746	177686746	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccaggtactccaggctcAccctgggggaggcaatgggg	15	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	177686746	177686746	A	C	SNP	COL23A1	ENST00000390654	human	ensembl	69_37n	-1	known	silent	c.705	p.G235	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767	57	0	0	65	19	22.35	-	-	-	C	177686746	A	C	177686746	2	2	232	1	0	0	0	0	0	0	0	1	3712	146	6	5		5	COL23A1	5	177686746	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	888229	177686746	3228514	928	16454										
CNOT6	0	genome.wustl.edu	37	chr5	180001097	180001097	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taacatcagtggctgcccgcAccccctcatcccctctgacc	6	20	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	180001097	180001097	A	C	SNP	CNOT6	ENST00000261951	human	ensembl	69_37n	1	known	missense	c.1571	p.H524P	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300	144	0	0	154	26	14.36	-	-	-	C	180001097	A	C	180001097	3	2	232	1	0	0	0	0	1	0	0	0	3652	159	6	5	1613	5	CNOT6	5	180001097	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2314351	180001097	914163	929	16455										
TRIM7	0	genome.wustl.edu	37	chr5	180627053	180627053	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgcctggaactctgcccccAccttctcctgctccgctgcc	8	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	180627053	180627053	A	C	SNP	TRIM7	ENST00000274773	human	ensembl	69_37n	-1	known	missense	c.647	p.V216G	0.984	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,prints_Znf_B-box_chordata,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM7	HGNC	ENSG00000146054	77	0	0	36	15	29.41	-	-	-	C	180627053	A	C	180627053	3	2	232	1	0	0	0	0	1	0	0	0	16639	159	6	5	908	5	TRIM7	5	180627053	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	625956	180627053	288207	930	16456										
TRIM52	0	genome.wustl.edu	37	chr5	180687096	180687096	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagatggcctctttgtccAcctcacagaagagtttcagg	9	12	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	180687096	180687096	A	C	SNP	TRIM52	ENST00000327767	human	ensembl	69_37n	-1	known	missense	c.719	p.V240G	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM52	HGNC	ENSG00000183718	218	0	0	171	29	14.5	-	-	-	C	180687096	A	C	180687096	3	2	232	1	0	0	0	0	1	0	0	0	16623	159	6	5	182	5	TRIM52	5	180687096	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	60043	180687096	228164	931	16457										
TRIM52	0	genome.wustl.edu	37	chr5	180687271	180687271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttcggcactgggggcaggTgaactgccctggaaggggca	17	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	5	180687271	180687271	T	G	SNP	TRIM52	ENST00000327767	human	ensembl	69_37n	-1	known	missense	c.544	p.T182P	1.000	smart_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM52	HGNC	ENSG00000183718	138	0	0	120	20	14.29	-	-	-	G	180687271	T	G	180687271	3	3	232	1	0	0	0	0	1	0	0	0	16623	1696	59	5	357	5	TRIM52	5	180687271	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	175	180687271	227989	932	16458										
SERPINB9	0	genome.wustl.edu	37	chr6	2890549	2890549	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacgctgccgctgcctcggTgccttcttcattcacctcca	8	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	2890549	2890549	T	G	SNP	SERPINB9	ENST00000380698	human	ensembl	69_37n	-1	known	missense	c.979	p.T327P	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB9	HGNC	ENSG00000170542	187	1	0.53	180	29	13.74	-	-	-	G	2890549	T	G	2890549	3	3	232	1	0	0	0	0	1	0	0	0	14196	1696	59	5	155	5	SERPINB9	6	2890549	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		2890549	168224518	933	16459										
SERPINB6	0	genome.wustl.edu	37	chr6	2948932	2948932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtaagtgagttctttctccAcctagagggagacagttgaa	11	8	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	2948932	2948932	A	C	SNP	SERPINB6	ENST00000335686	human	ensembl	69_37n	-1	known	missense	c.731	p.V244G	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570	183	1	0.54	154	29	15.85	-	-	-	C	2948932	A	C	2948932	3	2	232	1	0	0	0	0	1	0	0	0	14193	173	6	5	403	5	SERPINB6	6	2948932	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	58383	2948932	168166135	934	16460										
PRPF4B	0	genome.wustl.edu	37	chr6	4032363	4032363	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaagaaaagtaaggggggTattgaaatcgttaaagagaa	12	1	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	4032363	4032363	T	G	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	silent	c.612	p.G204	0.012	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	392	0	0	433	52	10.66	-	-	-	G	4032363	T	G	4032363	2	3	232	1	0	0	0	0	0	0	0	1	12654	1625	57	5		5	PRPF4B	6	4032363	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1083431	4032363	167082704	935	16461										
CDYL	0	genome.wustl.edu	37	chr6	4943915	4943915	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaaggcttggtttcaaacAccctataccaccttcggaca	7	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	4943915	4943915	A	C	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	silent	c.1419	p.T473	0.970	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	104	1	0.95	80	20	20	-	-	-	C	4943915	A	C	4943915	2	2	232	1	0	0	0	0	0	0	0	1	3214	146	6	5		5	CDYL	6	4943915	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	911552	4943915	166171152	936	16462										
RREB1	0	genome.wustl.edu	37	chr6	7211829	7211829	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagaagacgggcagtcaggTgacttggagaagaaagctga	16	5	1	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	7211829	7211829	T	G	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	silent	c.594	p.G198	0.262	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	67	0	0	56	14	20	-	-	-	G	7211829	T	G	7211829	2	3	232	1	0	0	0	0	0	0	0	1	13765	1683	59	5		5	RREB1	6	7211829	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2267914	7211829	163903238	937	16463										
RREB1	0	genome.wustl.edu	37	chr6	7229820	7229820	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaaggcccctgccgccccActgcaggcgatcttcaagca	9	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	7229820	7229820	A	C	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	silent	c.1488	p.P496	0.046	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	171	1	0.58	89	19	17.59	-	-	-	C	7229820	A	C	7229820	2	2	232	1	0	0	0	0	0	0	0	1	13765	146	6	5		5	RREB1	6	7229820	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17991	7229820	163885247	938	16464										
DSP	0	genome.wustl.edu	37	chr6	7571809	7571809	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctccctggctatccccagcAccagacaggtcggcttggga	12	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	7571809	7571809	A	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.1895	p.H632P	0.996	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	169	1	0.59	203	29	12.5	-	-	-	C	7571809	A	C	7571809	3	2	232	1	0	0	0	0	1	0	0	0	4816	159	6	5	1949	5	DSP	6	7571809	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	341989	7571809	163543258	939	16465										
GCNT2	0	genome.wustl.edu	37	chr6	10529558	10529558	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgacggatgcctttaaaggTgcagtgaaacagttactcag	12	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	10529558	10529558	T	G	SNP	GCNT2	ENST00000379597	human	ensembl	69_37n	1	known	silent	c.414	p.G138	0.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846	174	0	0	157	20	11.3	-	-	-	G	10529558	T	G	10529558	2	3	232	1	0	0	0	0	0	0	0	1	6351	1683	59	5		5	GCNT2	6	10529558	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2957749	10529558	160585509	940	16466										
GCM2	0	genome.wustl.edu	37	chr6	10874881	10874881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtggaatccttataaagggTgggatatgggcttgaatttg	15	3	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	10874881	10874881	T	G	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	missense	c.868	p.T290P	0.052	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	241	0	0	237	33	12.13	-	-	-	G	10874881	T	G	10874881	3	3	232	1	0	0	0	0	1	0	0	0	6348	1696	59	5	656	5	GCM2	6	10874881	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	345323	10874881	160240186	941	16467										
EDN1	0	genome.wustl.edu	37	chr6	12292712	12292712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagtgtgtctacttctgccAcctggacatcatttgggtca	10	10	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	12292712	12292712	A	C	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	missense	c.203	p.H68P	1.000	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	153	0	0	115	22	15.94	-	-	-	C	12292712	A	C	12292712	3	2	232	1	0	0	0	0	1	0	0	0	4951	159	6	5	209	5	EDN1	6	12292712	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1417831	12292712	158822355	942	16468										
RNF182	0	genome.wustl.edu	37	chr6	13977941	13977941	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctctacttcagctccttAcccttaggaatctacttact	4	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	13977941	13977941	A	C	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.591	p.L197F	0.984	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	384	3	0.77	210	28	11.67	-	-	-	C	13977941	A	C	13977941	3	2	232	1	0	0	0	0	1	0	0	0	13552	388	14	5	593	5	RNF182	6	13977941	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1685229	13977941	157137126	943	16469										
KIF13A	0	genome.wustl.edu	37	chr6	17800249	17800249	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctacgacttcaaggctcccActttcactggaattctccga	6	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	17800249	17800249	A	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.2550	p.S850R	0.994	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	185	1	0.54	205	31	13.08	-	-	-	C	17800249	A	C	17800249	3	2	232	1	0	0	0	0	1	0	0	0	8326	156	6	5	2968	5	KIF13A	6	17800249	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3822308	17800249	153314818	944	16470										
TPMT	0	genome.wustl.edu	37	chr6	18148104	18148104	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaaaaataccctcagtccActcttgcctttaaggaaagt	7	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	18148104	18148104	A	C	SNP	TPMT	ENST00000309983	human	ensembl	69_37n	-1	known	missense	c.183	p.S61R	0.800	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	-	no_errors	TPMT	HGNC	ENSG00000137364	158	1	0.63	133	16	10.74	-	-	-	C	18148104	A	C	18148104	3	2	232	1	0	0	0	0	1	0	0	0	16505	156	6	5	582	5	TPMT	6	18148104	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	347855	18148104	152966963	945	16471										
RNF144B	0	genome.wustl.edu	37	chr6	18457500	18457500	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtggaatgcccttcttgccAcctgaaattctgctcgtgtt	10	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	18457500	18457500	A	C	SNP	RNF144B	ENST00000259939	human	ensembl	69_37n	1	known	missense	c.446	p.H149P	0.997	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC	-	no_errors	RNF144B	HGNC	ENSG00000137393	419	0	0	315	38	10.7	-	-	-	C	18457500	A	C	18457500	3	2	232	1	0	0	0	0	1	0	0	0	13532	159	6	5	460	5	RNF144B	6	18457500	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	309396	18457500	152657567	946	16472										
MBOAT1	0	genome.wustl.edu	37	chr6	20124753	20124753	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcatccacaaggcaggTgacaggaaaggtcttcgtta	11	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	20124753	20124753	T	G	SNP	MBOAT1	ENST00000324607	human	ensembl	69_37n	-1	known	missense	c.793	p.T265P	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	352	0	0	274	33	10.71	-	-	-	G	20124753	T	G	20124753	3	3	232	1	0	0	0	0	1	0	0	0	9427	1696	59	5	718	5	MBOAT1	6	20124753	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1667253	20124753	150990314	947	16473										
MBOAT1	0	genome.wustl.edu	37	chr6	20126778	20126778	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggttctggcaagctgtggaaAccttttcgcttccagttcac	10	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	20126778	20126778	A	C	SNP	MBOAT1	ENST00000324607	human	ensembl	69_37n	-1	known	silent	c.684	p.G228	0.099	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	548	0	0	362	41	10.17	-	-	-	C	20126778	A	C	20126778	2	2	232	1	0	0	0	0	0	0	0	1	9427	30	2	5		5	MBOAT1	6	20126778	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2025	20126778	150988289	948	16474										
CDKAL1	0	genome.wustl.edu	37	chr6	21231400	21231400	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgctgcctccttctcagccActcttcttaatgaggctccc	6	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	21231400	21231400	A	C	SNP	CDKAL1	ENST00000476517	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDKAL1	HGNC	ENSG00000145996	27	0	0	19	6	23.08	-	-	-	C	21231400	A	C	21231400	1	2	232	0	1	0	0	0	0	0	0	0	3181	174	6	5		5	CDKAL1	6	21231400	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1104622	21231400	149883667	949	16475										
TDP2	0	genome.wustl.edu	37	chr6	24653380	24653380	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcatttcctgacacgttcAcctgcagcaggacaaacagt	8	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	24653380	24653380	A	C	SNP	TDP2	ENST00000545995	human	ensembl	69_37n	-1	known	missense	c.728	p.V243G	0.877	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,superfamily_UBA-like	-	no_errors	TDP2	HGNC	ENSG00000111802	303	0	0	275	42	13.17	-	-	-	C	24653380	A	C	24653380	3	2	232	1	0	0	0	0	1	0	0	0	15824	173	6	5	458	5	TDP2	6	24653380	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3421980	24653380	146461687	950	16476										
LRRC16A	0	genome.wustl.edu	37	chr6	25479371	25479371	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaagagacagaatgttcccAccgttctccagacttacctt	6	13	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	25479371	25479371	A	C	SNP	LRRC16A	ENST00000377969	human	ensembl	69_37n	1	known	missense	c.427	p.T143P	0.000	NULL	NULL	-	no_errors	LRRC16A	HGNC	ENSG00000079691	691	0	0	519	64	10.98	-	-	-	C	25479371	A	C	25479371	3	2	232	1	0	0	0	0	1	0	0	0	9037	174	6	5		5	LRRC16A	6	25479371	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	825991	25479371	145635696	951	16477										
SLC17A4	0	genome.wustl.edu	37	chr6	25776981	25776981	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagagactggacacaggggTgaacgtgggaagctcagagc	18	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	25776981	25776981	T	G	SNP	SLC17A4	ENST00000397076	human	ensembl	69_37n	1	known	silent	c.456	p.G152	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC17A4	HGNC	ENSG00000146039	178	1	0.56	141	26	15.48	-	-	-	G	25776981	T	G	25776981	2	3	232	1	0	0	0	0	0	0	0	1	14508	1711	59	5		5	SLC17A4	6	25776981	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	297610	25776981	145338086	952	16478										
SLC17A3	0	genome.wustl.edu	37	chr6	25845729	25845729	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagaagaagacattcctccAcccaaactcagggtcctgga	8	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	25845729	25845729	A	C	SNP	SLC17A3	ENST00000397060	human	ensembl	69_37n	-1	known	missense	c.1378	p.W460G	0.975	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564	328	0	0	209	29	12.08	-	-	-	C	25845729	A	C	25845729	3	2	232	1	0	0	0	0	1	0	0	0	14507	159	6	5	122	5	SLC17A3	6	25845729	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	68748	25845729	145269338	953	16479										
HIST1H3F	0	genome.wustl.edu	37	chr6	26250529	26250529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtgtcctcaaagagccccAccaggtaagcctcgcaggcc	11	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	26250529	26250529	A	C	SNP	HIST1H3F	ENST00000446824	human	ensembl	69_37n	-1	known	missense	c.305	p.V102G	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3F	HGNC	ENSG00000256316	65	0	0	59	11	15.49	-	-	-	C	26250529	A	C	26250529	3	2	232	1	0	0	0	0	1	0	0	0	7211	159	6	5	109	5	HIST1H3F	6	26250529	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	404800	26250529	144864538	954	16480										
BTN3A1	0	genome.wustl.edu	37	chr6	26413610	26413610	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaagagtggcatataggggTgtgcagtaagaatgtgcaga	16	3	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	26413610	26413610	T	G	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	missense	c.1232	p.V411G	0.962	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	312	3	0.95	270	41	13.14	-	-	-	G	26413610	T	G	26413610	3	3	232	1	0	0	0	0	1	0	0	0	1571	1696	59	5	1434	5	BTN3A1	6	26413610	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	163081	26413610	144701457	955	16481										
BTN1A1	0	genome.wustl.edu	37	chr6	26509376	26509376	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccattctaagctaatccctAcccaacccagccaaggggca	6	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	26509376	26509376	A	C	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	missense	c.1555	p.T519P	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	159	1	0.62	120	29	18.95	-	-	-	C	26509376	A	C	26509376	3	2	232	1	0	0	0	0	1	0	0	0	1568	391	14	5	1581	5	BTN1A1	6	26509376	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	95766	26509376	144605691	956	16482										
BTN1A1	0	genome.wustl.edu	37	chr6	26509396	26509396	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccaacccagccaaggggcAccttaaggaatatctcagct	8	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	26509396	26509396	A	C	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	silent	c.1575	p.A525	0.001	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	143	0	0	127	22	14.77	-	-	-	C	26509396	A	C	26509396	2	2	232	1	0	0	0	0	0	0	0	1	1568	146	6	5		5	BTN1A1	6	26509396	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20	26509396	144605671	957	16483										
SCAND3	0	genome.wustl.edu	37	chr6	28554127	28554127	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcttccagcaaagtcaccAcctcttctccactctcagga	4	16	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	28554127	28554127	A	C	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.368	p.V123G	0.512	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	259	2	0.77	230	38	14.13	-	-	-	C	28554127	A	C	28554127	3	2	232	1	0	0	0	0	1	0	0	0	13963	159	6	5	3625	5	SCAND3	6	28554127	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2044731	28554127	142560940	958	16484										
TRIM27	0	genome.wustl.edu	37	chr6	28872023	28872023	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagaaagtgaaggtgtgacAcctctctgtcacgttgtaga	12	7	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	28872023	28872023	A	C	SNP	TRIM27	ENST00000377199	human	ensembl	69_37n	-1	known	missense	c.1366	p.C456G	0.998	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM27	HGNC	ENSG00000204713	199	0	0	182	33	15.28	-	-	-	C	28872023	A	C	28872023	3	2	232	1	0	0	0	0	1	0	0	0	16597	159	6	5	179	5	TRIM27	6	28872023	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	317896	28872023	142243044	959	16485										
OR2J3	0	genome.wustl.edu	37	chr6	29080101	29080101	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgcaccctcgtttctgccAcctgctggctgtggcttctt	9	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29080101	29080101	A	C	SNP	OR2J3	ENST00000377169	human	ensembl	69_37n	1	known	missense	c.434	p.H145P	0.727	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701	322	0	0	306	57	15.66	-	-	-	C	29080101	A	C	29080101	3	2	232	1	0	0	0	0	1	0	0	0	11077	159	6	5	436	5	OR2J3	6	29080101	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	208078	29080101	142034966	960	16486										
OR2J3	0	genome.wustl.edu	37	chr6	29080163	29080163	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcacttcattcctccttcAccttctgggtacctctgtgt	6	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29080163	29080163	A	C	SNP	OR2J3	ENST00000377169	human	ensembl	69_37n	1	known	missense	c.496	p.T166P	0.007	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701	263	2	0.74	182	56	23.53	-	-	-	C	29080163	A	C	29080163	3	2	232	1	0	0	0	0	1	0	0	0	11077	159	6	5	498	5	OR2J3	6	29080163	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	62	29080163	142034904	961	16487										
OR2J2	0	genome.wustl.edu	37	chr6	29141989	29141989	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcgtttatcatgtgttgacAcccatgcaaatgagctgacc	9	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29141989	29141989	A	C	SNP	OR2J2	ENST00000377167	human	ensembl	69_37n	1	known	missense	c.577	p.T193P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700	363	0	0	296	33	10	-	-	-	C	29141989	A	C	29141989	3	2	232	1	0	0	0	0	1	0	0	0	11076	159	6	5	579	5	OR2J2	6	29141989	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61826	29141989	141973078	962	16488										
OR10C1	0	genome.wustl.edu	37	chr6	29408253	29408253	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgggcctgtggggtgctggTggggctgggccacacccctt	19	11	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29408253	29408253	T	G	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	missense	c.461	p.V154G	0.699	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	274	2	0.72	285	36	11.21	-	-	-	G	29408253	T	G	29408253	3	3	232	1	0	0	0	0	1	0	0	0	10971	1696	59	5	463	5	OR10C1	6	29408253	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	266264	29408253	141706814	963	16489										
UBD	0	genome.wustl.edu	37	chr6	29523867	29523867	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtgcctctttgcctcatcAcctgactccacaagaaacaa	6	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29523867	29523867	A	C	SNP	UBD	ENST00000377050	human	ensembl	69_37n	-1	known	silent	c.288	p.G96	0.000	smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,smart_Ubiquitin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	UBD	HGNC	ENSG00000213886	173	1	0.57	104	18	14.75	-	-	-	C	29523867	A	C	29523867	2	2	232	1	0	0	0	0	0	0	0	1	16940	146	6	5		5	UBD	6	29523867	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	115614	29523867	141591200	964	16490										
OR2H2	0	genome.wustl.edu	37	chr6	29556202	29556202	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtggtccagacaccatccAccctgcacctgcccttctgc	7	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29556202	29556202	A	C	SNP	OR2H2	ENST00000383640	human	ensembl	69_37n	1	known	missense	c.481	p.T161P	0.059	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2H2	HGNC	ENSG00000204657	308	3	0.95	255	60	18.99	-	-	-	C	29556202	A	C	29556202	3	2	232	1	0	0	0	0	1	0	0	0	11075	159	6	5	483	5	OR2H2	6	29556202	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32335	29556202	141558865	965	16491										
OR2H2	0	genome.wustl.edu	37	chr6	29556460	29556460	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcccatctcactgtggtcAccctcttctacagctcagtc	5	18	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29556460	29556460	A	C	SNP	OR2H2	ENST00000383640	human	ensembl	69_37n	1	known	missense	c.739	p.T247P	0.148	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2H2	HGNC	ENSG00000204657	276	2	0.72	241	37	13.26	-	-	-	C	29556460	A	C	29556460	3	2	232	1	0	0	0	0	1	0	0	0	11075	159	6	5	741	5	OR2H2	6	29556460	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	258	29556460	141558607	966	16492										
ZFP57	0	genome.wustl.edu	37	chr6	29643808	29643808	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcttcctgggtgaaattcActgccacatcctcaaaggtg	8	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29643808	29643808	A	C	SNP	ZFP57	ENST00000488757	human	ensembl	69_37n	-1	known	missense	c.152	p.V51G	0.894	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	266	0	0	231	28	10.73	-	-	-	C	29643808	A	C	29643808	3	2	232	1	0	0	0	0	1	0	0	0	17747	159	6	5	1470	5	ZFP57	6	29643808	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87348	29643808	141471259	967	16493										
HLA-F	0	genome.wustl.edu	37	chr6	29693241	29693241	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagcagtctccccagcccAccatccccatcgtgggcatc	8	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29693241	29693241	A	C	SNP	HLA-F	ENST00000259951	human	ensembl	69_37n	1	known	missense	c.904	p.T302P	0.001	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-F	HGNC	ENSG00000204642	261	2	0.76	160	26	13.9	-	-	-	C	29693241	A	C	29693241	3	2	232	1	0	0	0	0	1	0	0	0	7262	159	6	5	922	5	HLA-F	6	29693241	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	49433	29693241	141421826	968	16494										
HLA-F	0	genome.wustl.edu	37	chr6	29694783	29694783	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcttgggccgccggaaggTgggtgacatgtggatcttgt	17	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	29694783	29694783	T	G	SNP	HLA-F	ENST00000440587	human	ensembl	69_37n	1	known	splice_site	c.771+2	e4+2	0.999	-	-	-	no_errors	HLA-F	HGNC	ENSG00000204642	372	1	0.27	226	38	14.39	-	-	-	G	29694783	T	G	29694783	5	3	232	1	0	0	0	0	0	0	1	0	7262	1696	59	5	1195	5	HLA-F	6	29694783	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1542	29694783	141420284	969	16495										
TRIM10	0	genome.wustl.edu	37	chr6	30126399	30126399	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgttgtctcttggtggacAcctgagtctgagggggcagg	16	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30126399	30126399	A	C	SNP	TRIM10	ENST00000449742	human	ensembl	69_37n	-1	known	missense	c.533	p.V178G	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613	385	1	0.26	301	62	17.03	-	-	-	C	30126399	A	C	30126399	3	2	232	1	0	0	0	0	1	0	0	0	16582	159	6	5	1020	5	TRIM10	6	30126399	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	431616	30126399	140988668	970	16496										
TRIM39	0	genome.wustl.edu	37	chr6	30297549	30297549	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctacacaggagtacaaggTggggaagcagacacacgatg	14	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30297549	30297549	T	G	SNP	TRIM39	ENST00000376656	human	ensembl	69_37n	1	known	splice_site	c.453+2	e1+2	1.000	-	-	-	no_errors	TRIM39	HGNC	ENSG00000204599	63	0	0	43	10	18.87	-	-	-	G	30297549	T	G	30297549	5	3	232	1	0	0	0	0	0	0	1	0	16609	1710	59	5	457	5	TRIM39	6	30297549	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	171150	30297549	140817518	971	16497										
ABCF1	0	genome.wustl.edu	37	chr6	30558154	30558154	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccatcaatgaatacaagggTggtaagtcagctgagagtgt	13	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30558154	30558154	T	G	SNP	ABCF1	ENST00000475993	human	ensembl	69_37n	1	known	missense	c.1621	p.C541G	0.921	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCF1	HGNC	ENSG00000204574	258	0	0	190	42	17.95	-	-	-	G	30558154	T	G	30558154	3	3	232	1	0	0	0	0	1	0	0	0	65	1710	59	5	2464	5	ABCF1	6	30558154	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	260605	30558154	140556913	972	16498										
MDC1	0	genome.wustl.edu	37	chr6	30672585	30672585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacaggctggtctgtggaggTggaaggctggagctcagggg	20	6	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30672585	30672585	T	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.4375	p.T1459P	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	214	2	0.92	183	33	15.28	-	-	-	G	30672585	T	G	30672585	3	3	232	1	0	0	0	0	1	0	0	0	9474	1696	59	5	1918	5	MDC1	6	30672585	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	114431	30672585	140442482	973	16499			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30672810	30672810	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgagatgtgggctcaggggTgacaggctgctctgtggagg	19	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30672810	30672810	T	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.4150	p.T1384P	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	248	0	0	224	35	13.46	-	-	-	G	30672810	T	G	30672810	3	3	232	1	0	0	0	0	1	0	0	0	9474	1696	59	5	2143	5	MDC1	6	30672810	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	225	30672810	140442257	974	16500			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30672954	30672954	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacaggttggtctgtggaggTggaaatctggagctcagggg	19	5	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30672954	30672954	T	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.4006	p.T1336P	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	314	2	0.63	282	50	15.06	-	-	-	G	30672954	T	G	30672954	3	3	232	1	0	0	0	0	1	0	0	0	9474	1696	59	5	2287	5	MDC1	6	30672954	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	144	30672954	140442113	975	16501			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30673816	30673816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagttaaggggcttttggggTggggctggggcttcaggtac	20	5	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30673816	30673816	T	G	SNP	MDC1	ENST00000417033	human	ensembl	69_37n	-1	known	missense	c.325	p.T109P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MDC1	HGNC	ENSG00000137337	193	1	0.52	186	21	10.1	-	-	-	G	30673816	T	G	30673816	3	3	232	1	0	0	0	0	1	0	0	0	9474	1683	59	5	3149	5	MDC1	6	30673816	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	862	30673816	140441251	976	16502			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30675209	30675209	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggaagccttctcagcaggTggcatcttgcaattcaggag	12	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30675209	30675209	T	G	SNP	MDC1	ENST00000417033	human	ensembl	69_37n	-1	known	missense	c.217	p.T73P	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MDC1	HGNC	ENSG00000137337	264	0	0	258	38	12.71	-	-	-	G	30675209	T	G	30675209	3	3	232	1	0	0	0	0	1	0	0	0	9474	1683	59	5	3261	5	MDC1	6	30675209	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1393	30675209	140439858	977	16503			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30675885	30675885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggccctctctcagggcccAccctctctgctgtttctttt	7	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30675885	30675885	A	C	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.2471	p.V824G	0.059	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	660	4	0.6	576	107	15.67	-	-	-	C	30675885	A	C	30675885	3	2	232	1	0	0	0	0	1	0	0	0	9474	159	6	5	3830	5	MDC1	6	30675885	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	676	30675885	140439182	978	16504			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30680193	30680193	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcttggcttctctccaggTggatcccaggtgagctctta	12	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30680193	30680193	T	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.1526	p.H509P	0.122	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	201	2	0.99	155	26	14.21	-	-	-	G	30680193	T	G	30680193	3	3	232	1	0	0	0	0	1	0	0	0	9474	1696	59	5	4787	5	MDC1	6	30680193	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4308	30680193	140434874	979	16505			7	37		8	8	8415	N	T_A	2.17316e-05
MDC1	0	genome.wustl.edu	37	chr6	30680999	30680999	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctttgcctctacagtggcAcctcttctggcagctgagga	11	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30680999	30680999	A	C	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	silent	c.720	p.G240	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	197	0	0	146	22	12.94	-	-	-	C	30680999	A	C	30680999	2	2	232	1	0	0	0	0	0	0	0	1	9474	146	6	5		5	MDC1	6	30680999	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	806	30680999	140434068	980	16506			7	37		8	8	8415	N	T_A	2.17316e-05
DPCR1	0	genome.wustl.edu	37	chr6	30919933	30919933	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagtaaagtccacagaaaAcccagaaaaaacagcagcag	7	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	30919933	30919933	A	C	SNP	DPCR1	ENST00000304311	human	ensembl	69_37n	1	known	missense	c.218	p.N73T	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	790	4	0.5	544	61	10.05	-	-	-	C	30919933	A	C	30919933	3	2	232	1	0	0	0	0	1	0	0	0	4747	43	2	5	3698	5	DPCR1	6	30919933	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	238934	30919933	140195134	981	16507										
CDSN	0	genome.wustl.edu	37	chr6	31085092	31085092	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaaaagatcctgcagaaccAccctgggcaatgctggatcc	9	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31085092	31085092	A	C	SNP	CDSN	ENST00000376288	human	ensembl	69_37n	-1	known	silent	c.300	p.G100	0.002	NULL	NULL	-	no_errors	CDSN	HGNC	ENSG00000204539	32	0	0	33	7	17.5	-	-	-	C	31085092	A	C	31085092	2	2	232	1	0	0	0	0	0	0	0	1	3208	146	6	5		5	CDSN	6	31085092	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	165159	31085092	140029975	982	16508										
CCHCR1	0	genome.wustl.edu	37	chr6	31112541	31112541	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcccgcagccgagtttccActtcagccaccttttcttgc	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31112541	31112541	A	C	SNP	CCHCR1	ENST00000396268	human	ensembl	69_37n	-1	known	missense	c.2090	p.V697G	1.000	pfam_HCR	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536	154	0	0	105	22	17.32	-	-	-	C	31112541	A	C	31112541	3	2	232	1	0	0	0	0	1	0	0	0	2904	159	6	5	541	5	CCHCR1	6	31112541	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27449	31112541	140002526	983	16509										
LTA	0	genome.wustl.edu	37	chr6	31541421	31541421	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacacagatggcatcccccAcctagtcctcagccctagta	6	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31541421	31541421	A	C	SNP	LTA	ENST00000418386	human	ensembl	69_37n	1	known	missense	c.569	p.H190P	0.934	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_beta	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_beta,prints_TNF_a/b/c	-	no_errors	LTA	HGNC	ENSG00000226979	147	1	0.68	99	33	24.81	-	-	-	C	31541421	A	C	31541421	3	2	232	1	0	0	0	0	1	0	0	0	9134	159	6	5	579	5	LTA	6	31541421	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	428880	31541421	139573646	984	16510										
LY6G6F	0	genome.wustl.edu	37	chr6	31678347	31678347	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggaaaaccccacagcccAcctgcccacaagcccaggtg	8	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31678347	31678347	A	C	SNP	LY6G6F	ENST00000375832	human	ensembl	69_37n	1	known	silent	c.873	p.P291	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY6G6F	HGNC	ENSG00000204424	140	0	0	101	16	13.68	-	-	-	C	31678347	A	C	31678347	2	2	232	1	0	0	0	0	0	0	0	1	9163	146	6	5		5	LY6G6F	6	31678347	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	136926	31678347	139436720	985	16511										
VARS	0	genome.wustl.edu	37	chr6	31752013	31752013	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtatctggtatctttggggTgcacagctacagccacatct	11	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31752013	31752013	T	G	SNP	VARS	ENST00000375663	human	ensembl	69_37n	-1	known	missense	c.1649	p.H550P	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS	HGNC	ENSG00000204394	111	1	0.89	45	11	19.64	-	-	-	G	31752013	T	G	31752013	3	3	232	1	0	0	0	0	1	0	0	0	17220	1696	59	5	2217	5	VARS	6	31752013	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	73666	31752013	139363054	986	16512										
HSPA1L	0	genome.wustl.edu	37	chr6	31779258	31779258	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acattaagtccagcaatcacAcctgcatccttagtagcctg	6	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31779258	31779258	A	C	SNP	HSPA1L	ENST00000375654	human	ensembl	69_37n	-1	known	silent	c.492	p.G164	0.934	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390	87	0	0	68	14	16.87	-	-	-	C	31779258	A	C	31779258	2	2	232	1	0	0	0	0	0	0	0	1	7463	146	6	5		5	HSPA1L	6	31779258	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27245	31779258	139335809	987	16513										
EHMT2	0	genome.wustl.edu	37	chr6	31854604	31854604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaacgggctacctccaggTggttgttcaccacggcctcc	11	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	31854604	31854604	T	G	SNP	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	missense	c.2360	p.H787P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	98	0	0	58	12	16.9	-	-	-	G	31854604	T	G	31854604	3	3	232	1	0	0	0	0	1	0	0	0	5019	1696	59	5	1491	5	EHMT2	6	31854604	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	75346	31854604	139260463	988	16514										
TNXB	0	genome.wustl.edu	37	chr6	32050067	32050067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacccacaggtttcccaggTggggtggagtccctggactt	13	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32050067	32050067	T	G	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.3482	p.H1161P	0.990	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	258	1	0.38	230	46	16.67	-	-	-	G	32050067	T	G	32050067	3	3	232	1	0	0	0	0	1	0	0	0	16441	1696	59	5	11375	5	TNXB	6	32050067	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	195463	32050067	139065000	989	16515										
NOTCH4	0	genome.wustl.edu	37	chr6	32163332	32163335	+	Frame_Shift_Del	DEL	ATGT	ATGT	-													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaggaggcgggatcggaAtgttggaggcagaaccgcaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	ATGT	ATGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32163332	32163335	ATGT	-	DEL	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	frame_shift_del	c.5894_5891	p.N1964fs	0.001:0.001:0.002:0.001	pirsf_Notch,prints_Notch_4	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	75	0	0	64	8	10.96	-	-	-	-	32163335	ATGT	-	32163332	7	5	232	1	0	1	0	1	0	0	0	0	10623	101	4	0	121	0	NOTCH4	6	32163332	Frame_Shift_Del	DEL	ATGT	TCGA-A8-A0A6-01A-12W-A071-09	113265	32163332	138951735	990	16516										
NOTCH4	0	genome.wustl.edu	37	chr6	32181908	32181908	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgtagcctgtagggcaggTgcagttgtagccagagggct	17	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32181908	32181908	T	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.2146	p.T716P	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	227	2	0.86	203	31	13.19	-	-	-	G	32181908	T	G	32181908	3	3	232	1	0	0	0	0	1	0	0	0	10623	1696	59	5	3937	5	NOTCH4	6	32181908	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	18576	32181908	138933159	991	16517										
NOTCH4	0	genome.wustl.edu	37	chr6	32188812	32188812	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctggcatcagctggcaggTgcccccattcgaacagcccc	10	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32188812	32188812	T	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.742	p.T248P	1.000	pfam_EGF-like_dom,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	135	1	0.74	133	20	12.99	-	-	-	G	32188812	T	G	32188812	3	3	232	1	0	0	0	0	1	0	0	0	10623	1696	59	5	5377	5	NOTCH4	6	32188812	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6904	32188812	138926255	992	16518										
C6orf10	0	genome.wustl.edu	37	chr6	32261212	32261212	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttcaactcactcttctctAcctgggcttcctgtcctttc	4	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32261212	32261212	A	C	SNP	C6orf10	ENST00000447241	human	ensembl	69_37n	-1	known	missense	c.1238	p.V413G	0.000	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	488	4	0.81	416	72	14.69	-	-	-	C	32261212	A	C	32261212	3	2	232	1	0	0	0	0	1	0	0	0	2338	391	14	5	457	5	C6orf10	6	32261212	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	72400	32261212	138853855	993	16519										
BTNL2	0	genome.wustl.edu	37	chr6	32374896	32374896	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gattgtagcctggaaaatccAccatcctccctggaacaaag	8	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32374896	32374896	A	C	SNP	BTNL2	ENST00000468270	human	ensembl	69_37n	-1	known	missense	c.5	p.V2G	0.996	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	BTNL2	HGNC	ENSG00000204290	107	0	0	117	24	16.9	-	-	-	C	32374896	A	C	32374896	3	2	232	1	0	0	0	0	1	0	0	0	1574	159	6	5	1386	5	BTNL2	6	32374896	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	113684	32374896	138740171	994	16520										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32487287	32487287	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatcaggcctgtggacaccAccccagccttctcttcctgg	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32487287	32487287	A	C	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	missense	c.512	p.V171G	0.949	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	268	0	0	213	36	14.46	-	-	-	C	32487287	A	C	32487287	3	2	232	1	0	0	0	0	1	0	0	0	7260	159	6	5	304	5	HLA-DRB5	6	32487287	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	112391	32487287	138627780	995	16521										
HLA-DMB	0	genome.wustl.edu	37	chr6	32906595	32906595	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattcgccaagctattcagcAccccaaattcgcaaggggcc	8	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32906595	32906595	A	C	SNP	HLA-DMB	ENST00000418107	human	ensembl	69_37n	-1	known	missense	c.203	p.V68G	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_Ig_C1-set,pfam_MHC_II_b_N,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DMB	HGNC	ENSG00000242574	131	0	0	65	17	20.73	-	-	-	C	32906595	A	C	32906595	3	2	232	1	0	0	0	0	1	0	0	0	7250	159	6	5	608	5	HLA-DMB	6	32906595	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	419308	32906595	138208472	996	16522										
BRD2	0	genome.wustl.edu	37	chr6	32944106	32944106	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagccctgtatactcctccAcctgagatacctaccactgt	5	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32944106	32944106	A	C	SNP	BRD2	ENST00000449025	human	ensembl	69_37n	1	putative	missense	c.707	p.H236P	0.988	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRD2	HGNC	ENSG00000204256	231	0	0	163	37	18.5	-	-	-	C	32944106	A	C	32944106	3	2	232	1	0	0	0	0	1	0	0	0	1510	146	6	5	708	5	BRD2	6	32944106	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	37511	32944106	138170961	997	16523										
BRD2	0	genome.wustl.edu	37	chr6	32946109	32946109	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagcaagtggcagtgggggTggcagtgctgctttaggccc	17	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	32946109	32946109	T	G	SNP	BRD2	ENST00000449025	human	ensembl	69_37n	1	putative	missense	c.1802	p.V601G	0.558	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRD2	HGNC	ENSG00000204256	202	2	0.98	132	25	15.82	-	-	-	G	32946109	T	G	32946109	3	3	232	1	0	0	0	0	1	0	0	0	1510	1683	59	5	1819	5	BRD2	6	32946109	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2003	32946109	138168958	998	16524										
WDR46	0	genome.wustl.edu	37	chr6	33256955	33256955	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggctgtctccatctcgcccAcccgaacggcgatccacgtg	11	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	33256955	33256955	A	C	SNP	WDR46	ENST00000468157	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	WDR46	HGNC	ENSG00000227057	62	0	0	45	14	23.73	-	-	-	C	33256955	A	C	33256955	1	2	232	0	1	0	0	0	0	0	0	0	17396	174	6	5		5	WDR46	6	33256955	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	310846	33256955	137858112	999	16525										
SYNGAP1	0	genome.wustl.edu	37	chr6	33405770	33405770	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacttcacagagcagtggtAccctgtaaccctgccaacag	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	33405770	33405770	A	C	SNP	SYNGAP1	ENST00000418600	human	ensembl	69_37n	1	known	missense	c.1088	p.Y363S	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283	46	0	0	24	9	26.47	-	-	-	C	33405770	A	C	33405770	3	2	232	1	0	0	0	0	1	0	0	0	15539	391	14	5	1118	5	SYNGAP1	6	33405770	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	148815	33405770	137709297	1000	16526										
SYNGAP1	0	genome.wustl.edu	37	chr6	33412300	33412300	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggtctccaacatgcctcAcctgtcggctgacatcgaga	10	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	33412300	33412300	A	C	SNP	SYNGAP1	ENST00000418600	human	ensembl	69_37n	1	known	missense	c.3488	p.H1163P	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283	100	1	0.99	54	16	22.86	-	-	-	C	33412300	A	C	33412300	3	2	232	1	0	0	0	0	1	0	0	0	15539	159	6	5	3550	5	SYNGAP1	6	33412300	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6530	33412300	137702767	1001	16527										
BAK1	0	genome.wustl.edu	37	chr6	33543621	33543621	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggtcggcaggggcagccAccccttcagcctcctgttcc	12	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	33543621	33543621	A	C	SNP	BAK1	ENST00000360661	human	ensembl	69_37n	-1	known	missense	c.155	p.V52G	0.402	NULL	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BAK1	HGNC	ENSG00000030110	47	0	0	62	13	17.33	-	-	-	C	33543621	A	C	33543621	3	2	232	1	0	0	0	0	1	0	0	0	1309	159	6	5	496	5	BAK1	6	33543621	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	131321	33543621	137571446	1002	16528										
ANKS1A	0	genome.wustl.edu	37	chr6	34985809	34985809	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagaaaaggctagagaagtcAccctccttcgcctcggagtg	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	34985809	34985809	A	C	SNP	ANKS1A	ENST00000360359	human	ensembl	69_37n	1	known	silent	c.1983	p.S661	0.010	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999	103	1	0.95	78	25	24.27	-	-	-	C	34985809	A	C	34985809	2	2	232	1	0	0	0	0	0	0	0	1	687	146	6	5		5	ANKS1A	6	34985809	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1442188	34985809	136129258	1003	16529										
ZNF76	0	genome.wustl.edu	37	chr6	35258142	35258142	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtgggcgtctctacaccAccgctcatcacttaaaggta	9	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	35258142	35258142	A	C	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	1	known	missense	c.532	p.T178P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029	274	1	0.36	223	30	11.86	-	-	-	C	35258142	A	C	35258142	3	2	232	1	0	0	0	0	1	0	0	0	18229	159	6	5	550	5	ZNF76	6	35258142	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	272333	35258142	135856925	1004	16530										
DEF6	0	genome.wustl.edu	37	chr6	35288978	35288978	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccagataagcgtccggtcAccagcagctccttctcaggc	10	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	35288978	35288978	A	C	SNP	DEF6	ENST00000316637	human	ensembl	69_37n	1	known	missense	c.1687	p.T563P	0.147	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892	226	1	0.44	275	32	10.42	-	-	-	C	35288978	A	C	35288978	3	2	232	1	0	0	0	0	1	0	0	0	4417	159	6	5	1729	5	DEF6	6	35288978	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	30836	35288978	135826089	1005	16531										
DEF6	0	genome.wustl.edu	37	chr6	35289021	35289021	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagccccctctgcttgcccAccgtgactcctccctaaagc	6	21	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	35289021	35289021	A	C	SNP	DEF6	ENST00000316637	human	ensembl	69_37n	1	known	missense	c.1730	p.H577P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892	201	1	0.5	235	31	11.61	-	-	-	C	35289021	A	C	35289021	3	2	232	1	0	0	0	0	1	0	0	0	4417	159	6	5	1772	5	DEF6	6	35289021	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	43	35289021	135826046	1006	16532										
PPARD	0	genome.wustl.edu	37	chr6	35392415	35392415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacggcagtggctttgtcAcccgtgagttcctgcgcagc	12	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	35392415	35392415	A	C	SNP	PPARD	ENST00000311565	human	ensembl	69_37n	1	known	missense	c.937	p.T313P	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033	32	0	0	20	10	33.33	-	-	-	C	35392415	A	C	35392415	3	2	232	1	0	0	0	0	1	0	0	0	12371	159	6	5	972	5	PPARD	6	35392415	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	103394	35392415	135722652	1007	16533										
FANCE	0	genome.wustl.edu	37	chr6	35426160	35426160	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctggctgctggccctttcAcctgatctcagcctcagcaa	8	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	35426160	35426160	A	C	SNP	FANCE	ENST00000229769	human	ensembl	69_37n	1	known	silent	c.1056	p.S352	0.300	pfam_Fanconi_anaemia_gr_E_prot_C	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039	164	0	0	167	33	16.42	-	-	-	C	35426160	A	C	35426160	2	2	232	1	0	0	0	0	0	0	0	1	5712	146	6	5		5	FANCE	6	35426160	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	33745	35426160	135688907	1008	16534										
BRPF3	0	genome.wustl.edu	37	chr6	36181706	36181706	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggagcccactgggcctgcAccttccttgtctgagcaaga	11	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	36181706	36181706	A	C	SNP	BRPF3	ENST00000441730	human	ensembl	69_37n	1	known	missense	c.163	p.T55P	0.987	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRPF3	HGNC	ENSG00000096070	227	2	0.87	162	31	15.98	-	-	-	C	36181706	A	C	36181706	3	2	232	1	0	0	0	0	1	0	0	0	1529	146	6	5	2558	5	BRPF3	6	36181706	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	755546	36181706	134933361	1009	16535										
STK38	0	genome.wustl.edu	37	chr6	36507921	36507921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtcactttggtcattgtcAccctttcctttgtgtggtta	9	9	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	36507921	36507921	A	C	SNP	STK38	ENST00000229812	human	ensembl	69_37n	-1	known	missense	c.59	p.V20G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38	HGNC	ENSG00000112079	256	0	0	191	23	10.75	-	-	-	C	36507921	A	C	36507921	3	2	232	1	0	0	0	0	1	0	0	0	15394	159	6	5	1390	5	STK38	6	36507921	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	326215	36507921	134607146	1010	16536										
PI16	0	genome.wustl.edu	37	chr6	36930961	36930961	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccatggcaacagaggctccAccttgcgtaacaactgaggt	10	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	36930961	36930961	A	C	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	silent	c.843	p.P281	0.005	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	132	1	0.75	87	22	20	-	-	-	C	36930961	A	C	36930961	2	2	232	1	0	0	0	0	0	0	0	1	11943	146	6	5		5	PI16	6	36930961	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	423040	36930961	134184106	1011	16537										
TMEM217	0	genome.wustl.edu	37	chr6	37186584	37186584	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagcagctgatgaggatggTgatgaaagacaggaagagga	17	3	0	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	37186584	37186584	T	G	SNP	TMEM217	ENST00000336655	human	ensembl	69_37n	-1	known	missense	c.223	p.T75P	0.944	NULL	NULL	-	no_errors	TMEM217	HGNC	ENSG00000172738	394	0	0	307	54	14.84	-	-	-	G	37186584	T	G	37186584	3	3	232	1	0	0	0	0	1	0	0	0	16235	1696	59	5	478	5	TMEM217	6	37186584	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	255623	37186584	133928483	1012	16538										
TMEM217	0	genome.wustl.edu	37	chr6	37186654	37186654	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttatttatgatgttacttgcAcccctgtactttggtgtgat	8	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	37186654	37186654	A	C	SNP	TMEM217	ENST00000336655	human	ensembl	69_37n	-1	known	silent	c.153	p.G51	0.000	NULL	NULL	-	no_errors	TMEM217	HGNC	ENSG00000172738	424	4	0.93	389	62	13.75	-	-	-	C	37186654	A	C	37186654	2	2	232	1	0	0	0	0	0	0	0	1	16235	146	6	5		5	TMEM217	6	37186654	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	70	37186654	133928413	1013	16539										
RNF8	0	genome.wustl.edu	37	chr6	37336598	37336598	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgaaatcacaggggaaaggTgaagtggccagtacaccctc	13	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	37336598	37336598	T	G	SNP	RNF8	ENST00000373479	human	ensembl	69_37n	1	known	silent	c.579	p.G193	0.000	pirsf_E3_Ub_ligase_RNF8	pfam_FHA_dom,pfam_Znf_C3HC4_RING-type,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pirsf_E3_Ub_ligase_RNF8,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	RNF8	HGNC	ENSG00000112130	125	1	0.79	75	29	27.88	-	-	-	G	37336598	T	G	37336598	2	3	232	1	0	0	0	0	0	0	0	1	13586	1683	59	5		5	RNF8	6	37336598	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	149944	37336598	133778469	1014	16540										
DNAH8	0	genome.wustl.edu	37	chr6	38813405	38813405	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgaagccaagctgactcaggTgattgagaattggaccaacc	11	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	38813405	38813405	T	G	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.4250	p.V1417G	0.997	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	183	0	0	90	30	24.79	-	-	-	G	38813405	T	G	38813405	3	3	232	1	0	0	0	0	1	0	0	0	4642	1696	59	5	4376	5	DNAH8	6	38813405	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1476807	38813405	132301662	1015	16541										
DNAH8	0	genome.wustl.edu	37	chr6	38840464	38840464	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatccaaaagccattactgcAcctcagatgtttggcagact	7	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	38840464	38840464	A	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.6492	p.A2164	0.007	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	222	0	0	164	23	12.23	-	-	-	C	38840464	A	C	38840464	2	2	232	1	0	0	0	0	0	0	0	1	4642	146	6	5		5	DNAH8	6	38840464	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27059	38840464	132274603	1016	16542										
DNAH8	0	genome.wustl.edu	37	chr6	38942251	38942251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctggacatcagtaatttAcccatgtggaagccgatgct	9	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	38942251	38942251	A	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.12129	p.L4043F	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	133	1	0.75	80	18	18.37	-	-	-	C	38942251	A	C	38942251	3	2	232	1	0	0	0	0	1	0	0	0	4642	388	14	5	12451	5	DNAH8	6	38942251	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	101787	38942251	132172816	1017	16543										
KCNK16	0	genome.wustl.edu	37	chr6	39290284	39290284	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcaggggcagcacccggccAccccagcagctgcagagccc	13	18	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	39290284	39290284	A	C	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	silent	c.33	p.G11	0.558	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	23	0	0	7	7	50	-	-	-	C	39290284	A	C	39290284	2	2	232	1	0	0	0	0	0	0	0	1	8117	146	6	5		5	KCNK16	6	39290284	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	348033	39290284	131824783	1018	16544										
KIF6	0	genome.wustl.edu	37	chr6	39313492	39313492	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacctgtcttccagtggggTgctggtgctgctctgtttct	13	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	39313492	39313492	T	G	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.2305	p.T769P	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	20	0	0	10	9	47.37	-	-	-	G	39313492	T	G	39313492	3	3	232	1	0	0	0	0	1	0	0	0	8360	1696	59	5	151	5	KIF6	6	39313492	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	23208	39313492	131801575	1019	16545										
KIF6	0	genome.wustl.edu	37	chr6	39507921	39507921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgggactgtctgaattcAcgtctatccatgccagccaa	8	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	39507921	39507921	A	C	SNP	KIF6	ENST00000458470	human	ensembl	69_37n	-1	known	missense	c.1178	p.V393G	0.003	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF6	HGNC	ENSG00000164627	353	2	0.56	237	29	10.86	-	-	-	C	39507921	A	C	39507921	3	2	232	1	0	0	0	0	1	0	0	0	8360	146	6	5	985	5	KIF6	6	39507921	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	194429	39507921	131607146	1020	16546										
TRERF1	0	genome.wustl.edu	37	chr6	42196270	42196270	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcagccccggcgcccccAcgggccccgtagtcctctca	11	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	42196270	42196270	A	C	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	missense	c.3476	p.V1159G	0.134	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	222	2	0.89	237	30	11.24	-	-	-	C	42196270	A	C	42196270	3	2	232	1	0	0	0	0	1	0	0	0	16571	159	6	5	190	5	TRERF1	6	42196270	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2688349	42196270	128918797	1021	16547										
UBR2	0	genome.wustl.edu	37	chr6	42626013	42626013	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaagatgagggagagttcAcctaccagtcccgtggcaga	12	9	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	42626013	42626013	A	C	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	silent	c.3018	p.S1006	0.995	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	162	1	0.61	102	37	26.62	-	-	-	C	42626013	A	C	42626013	2	2	232	1	0	0	0	0	0	0	0	1	16999	146	6	5		5	UBR2	6	42626013	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	429743	42626013	128489054	1022	16548										
RPL7L1	0	genome.wustl.edu	37	chr6	42854090	42854090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggttcttgtgccctttccAcctctcagtggcccgtcatg	9	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	42854090	42854090	A	C	SNP	RPL7L1	ENST00000304734	human	ensembl	69_37n	1	known	missense	c.629	p.H210P	0.031	superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	pfam_Ribosomal_L30_ferredoxin-like,pfam_Ribosomal_L30_N,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	-	no_errors	RPL7L1	HGNC	ENSG00000146223	55	0	0	48	16	24.62	-	-	-	C	42854090	A	C	42854090	3	2	232	1	0	0	0	0	1	0	0	0	13687	159	6	5	651	5	RPL7L1	6	42854090	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	228077	42854090	128260977	1023	16549										
CNPY3	0	genome.wustl.edu	37	chr6	42905510	42905510	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtacacaaaggggtcaaggTggtgatggacatcccctatg	14	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	42905510	42905510	T	G	SNP	CNPY3	ENST00000372836	human	ensembl	69_37n	1	known	missense	c.428	p.V143G	1.000	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	210	0	0	266	36	11.88	-	-	-	G	42905510	T	G	42905510	3	3	232	1	0	0	0	0	1	0	0	0	3659	1696	59	5	442	5	CNPY3	6	42905510	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51420	42905510	128209557	1024	16550										
PEX6	0	genome.wustl.edu	37	chr6	42933445	42933445	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcactcctccagaatctccActtcgcccccggcttggggc	8	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	42933445	42933445	A	C	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.2445	p.S815R	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	218	0	0	155	32	17.11	-	-	-	C	42933445	A	C	42933445	3	2	232	1	0	0	0	0	1	0	0	0	11824	156	6	5	517	5	PEX6	6	42933445	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27935	42933445	128181622	1025	16551										
CUL7	0	genome.wustl.edu	37	chr6	43013138	43013138	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgaatgcgcgtatcaatgccAccctgaaacacacacaggac	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43013138	43013138	A	C	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	silent	c.3117	p.G1039	0.762	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	211	1	0.47	152	30	16.39	-	-	-	C	43013138	A	C	43013138	2	2	232	1	0	0	0	0	0	0	0	1	4091	146	6	5		5	CUL7	6	43013138	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	79693	43013138	128101929	1026	16552										
CUL9	0	genome.wustl.edu	37	chr6	43163849	43163849	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagctcctcggagatccccActtttgttactggccgagat	9	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43163849	43163849	A	C	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.2431	p.T811P	0.193	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	172	0	0	195	35	15.15	-	-	-	C	43163849	A	C	43163849	3	2	232	1	0	0	0	0	1	0	0	0	4092	159	6	5	2465	5	CUL9	6	43163849	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	150711	43163849	127951218	1027	16553										
TTBK1	0	genome.wustl.edu	37	chr6	43250493	43250493	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtggcgcccccatttgaggTgaatggcctcccacgagctg	13	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43250493	43250493	T	G	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	missense	c.2015	p.V672G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	188	0	0	90	19	17.43	-	-	-	G	43250493	T	G	43250493	3	3	232	1	0	0	0	0	1	0	0	0	16773	1696	59	5	2065	5	TTBK1	6	43250493	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	86644	43250493	127864574	1028	16554										
ZNF318	0	genome.wustl.edu	37	chr6	43307008	43307008	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtctcaggggccccctttccAccactactatagaatatgtc	7	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43307008	43307008	A	C	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	silent	c.4728	p.G1576	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	117	0	0	326	54	14.21	-	-	-	C	43307008	A	C	43307008	2	2	232	1	0	0	0	0	0	0	0	1	17932	146	6	5		5	ZNF318	6	43307008	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	56515	43307008	127808059	1029	16555										
ZNF318	0	genome.wustl.edu	37	chr6	43325020	43325020	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggaacagccagtaccaccAccatcaactccaaccagctc	5	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43325020	43325020	A	C	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	silent	c.1032	p.G344	0.004	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	202	0	0	132	27	16.98	-	-	-	C	43325020	A	C	43325020	2	2	232	1	0	0	0	0	0	0	0	1	17932	146	6	5		5	ZNF318	6	43325020	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18012	43325020	127790047	1030	16556										
ABCC10	0	genome.wustl.edu	37	chr6	43413383	43413383	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccacgggccggatcctaaAccgcttctcctctgatgtgg	10	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43413383	43413383	A	C	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.3077	p.N1026T	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	109	0	0	91	17	15.74	-	-	-	C	43413383	A	C	43413383	3	2	232	1	0	0	0	0	1	0	0	0	50	43	2	5	3043	5	ABCC10	6	43413383	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	88363	43413383	127701684	1031	16557										
RSPH9	0	genome.wustl.edu	37	chr6	43623404	43623404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaagaccccttttggacccAcccatgtcaatcggaccttt	6	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	43623404	43623404	A	C	SNP	RSPH9	ENST00000372165	human	ensembl	69_37n	1	known	missense	c.454	p.T152P	0.004	NULL	NULL	-	no_errors	RSPH9	HGNC	ENSG00000172426	257	2	0.77	306	53	14.64	-	-	-	C	43623404	A	C	43623404	3	2	232	1	0	0	0	0	1	0	0	0	13794	159	6	5	509	5	RSPH9	6	43623404	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	210021	43623404	127491663	1032	16558										
SLC35B2	0	genome.wustl.edu	37	chr6	44222399	44222399	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttacagcagaaggggatggTgggagggtcctatttcactt	15	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	44222399	44222399	T	G	SNP	SLC35B2	ENST00000495706	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC35B2	HGNC	ENSG00000157593	120	1	0.81	55	17	23.29	-	-	-	G	44222399	T	G	44222399	1	3	232	0	1	0	0	0	0	0	0	0	14665	1711	59	5		5	SLC35B2	6	44222399	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	598995	44222399	126892668	1033	16559										
ENPP4	0	genome.wustl.edu	37	chr6	46107848	46107848	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctaaacaattcgaacccAccagtcacctttgcaacact	5	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	46107848	46107848	A	C	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	silent	c.528	p.P176	0.592	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	300	0	0	275	31	10.13	-	-	-	C	46107848	A	C	46107848	2	2	232	1	0	0	0	0	0	0	0	1	5169	146	6	5		5	ENPP4	6	46107848	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1885449	46107848	125007219	1034	16560										
SLC25A27	0	genome.wustl.edu	37	chr6	46630143	46630143	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attggagggatgatggctggTgttattggccagtttttagc	15	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	46630143	46630143	T	G	SNP	SLC25A27	ENST00000371347	human	ensembl	69_37n	1	known	silent	c.414	p.G138	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A27	HGNC	ENSG00000153291	157	0	0	119	28	19.05	-	-	-	G	46630143	T	G	46630143	2	3	232	1	0	0	0	0	0	0	0	1	14579	1683	59	5		5	SLC25A27	6	46630143	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	522295	46630143	124484924	1035	16561										
GPR110	0	genome.wustl.edu	37	chr6	46993706	46993706	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttggaatctctataggtcAcctgaagcagcagctgatat	9	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	46993706	46993706	A	C	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.161	p.V54G	0.635	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	202	0	0	133	22	14.19	-	-	-	C	46993706	A	C	46993706	3	2	232	1	0	0	0	0	1	0	0	0	6677	159	6	5	2669	5	GPR110	6	46993706	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	363563	46993706	124121361	1036	16562										
CD2AP	0	genome.wustl.edu	37	chr6	47563748	47563748	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaaaccagttcctccaccAcctcctatagccaagtaagt	5	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	47563748	47563748	A	C	SNP	CD2AP	ENST00000359314	human	ensembl	69_37n	1	known	silent	c.1260	p.P420	0.995	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	732	3	0.41	510	125	19.62	-	-	-	C	47563748	A	C	47563748	2	2	232	1	0	0	0	0	0	0	0	1	3023	146	6	5		5	CD2AP	6	47563748	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	570042	47563748	123551319	1037	16563										
GPR111	0	genome.wustl.edu	37	chr6	47649836	47649836	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttagtggcccaataacacAccacaagggatgtgtggcag	11	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	47649836	47649836	A	C	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.1541	p.H514P	0.350	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	165	1	0.6	100	24	19.05	-	-	-	C	47649836	A	C	47649836	3	2	232	1	0	0	0	0	1	0	0	0	6678	159	6	5	1355	5	GPR111	6	47649836	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	86088	47649836	123465231	1038	16564										
TFAP2B	0	genome.wustl.edu	37	chr6	50808006	50808006	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaagaatatgctgttggccAccaagtgagtttattagact	10	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	50808006	50808006	A	C	SNP	TFAP2B	ENST00000263046	human	ensembl	69_37n	1	known	missense	c.1105	p.T369P	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196	145	0	0	126	20	13.7	-	-	-	C	50808006	A	C	50808006	3	2	232	1	0	0	0	0	1	0	0	0	15883	159	6	5	1100	5	TFAP2B	6	50808006	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3158170	50808006	120307061	1039	16565										
PKHD1	0	genome.wustl.edu	37	chr6	51613181	51613181	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggttcactttgattcccgccAcccaaatggtggaccacgct	9	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	51613181	51613181	A	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.9233	p.V3078G	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	392	0	0	282	37	11.46	-	-	-	C	51613181	A	C	51613181	3	2	232	1	0	0	0	0	1	0	0	0	12045	159	6	5	3070	5	PKHD1	6	51613181	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	805175	51613181	119501886	1040	16566										
PKHD1	0	genome.wustl.edu	37	chr6	51934269	51934269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtacctgagtgtgtctggTataggaaaagatcctgttta	11	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	51934269	51934269	T	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.764	p.Y255S	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	263	1	0.38	151	24	13.71	-	-	-	G	51934269	T	G	51934269	3	3	232	1	0	0	0	0	1	0	0	0	12045	1638	57	5	11727	5	PKHD1	6	51934269	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	321088	51934269	119180798	1041	16567										
IL17A	0	genome.wustl.edu	37	chr6	52052584	52052584	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagattactacaaccgatccAcctcaccttggaatctccag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	52052584	52052584	A	C	SNP	IL17A	ENST00000340057	human	ensembl	69_37n	1	known	missense	c.211	p.T71P	0.967	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17A	HGNC	ENSG00000112115	429	1	0.23	298	62	17.17	-	-	-	C	52052584	A	C	52052584	3	2	232	1	0	0	0	0	1	0	0	0	7688	159	6	5	217	5	IL17A	6	52052584	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	118315	52052584	119062483	1042	16568	175	2								
IL17A	0	genome.wustl.edu	37	chr6	52052589	52052589	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tactacaaccgatccacctcAccttggaatctccagtacgt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	52052589	52052589	A	C	SNP	IL17A	ENST00000340057	human	ensembl	69_37n	1	known	silent	c.216	p.S72	0.996	pfam_Interleukin-17,prints_Interleukin-17_chordata	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17A	HGNC	ENSG00000112115	427	2	0.47	287	72	19.94	-	-	-	C	52052589	A	C	52052589	2	2	232	1	0	0	0	0	0	0	0	1	7688	146	6	5		5	IL17A	6	52052589	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5	52052589	119062478	1043	16569	175	2								
GSTA5	0	genome.wustl.edu	37	chr6	52701109	52701109	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagaatggctctggtctgcAccagcttcatcccgtcaatc	8	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	52701109	52701109	A	C	SNP	GSTA5	ENST00000284562	human	ensembl	69_37n	-1	known	missense	c.197	p.V66G	0.997	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793	232	1	0.43	203	28	12.07	-	-	-	C	52701109	A	C	52701109	3	2	232	1	0	0	0	0	1	0	0	0	6885	159	6	5	487	5	GSTA5	6	52701109	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	648520	52701109	118413958	1044	16570										
ICK	0	genome.wustl.edu	37	chr6	52876621	52876621	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttggctgcagatctcagggTgggcgtgtctcgccgctgat	15	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	52876621	52876621	T	G	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	missense	c.1438	p.T480P	0.955	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	116	0	0	88	18	16.98	-	-	-	G	52876621	T	G	52876621	3	3	232	1	0	0	0	0	1	0	0	0	7538	1696	59	5	476	5	ICK	6	52876621	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	175512	52876621	118238446	1045	16571										
ICK	0	genome.wustl.edu	37	chr6	52883234	52883234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctgccatgatgcagcccAccgcccagacgtcaatgggg	11	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	52883234	52883234	A	C	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	missense	c.557	p.V186G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	224	0	0	254	46	15.28	-	-	-	C	52883234	A	C	52883234	3	2	232	1	0	0	0	0	1	0	0	0	7538	159	6	5	1373	5	ICK	6	52883234	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6613	52883234	118231833	1046	16572										
GCLC	0	genome.wustl.edu	37	chr6	53365147	53365147	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatccaccactgcattgccAcctgccggagaagagggtca	10	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	53365147	53365147	A	C	SNP	GCLC	ENST00000229416	human	ensembl	69_37n	-1	known	silent	c.1479	p.G493	1.000	pfam_GCS	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084	226	1	0.44	154	29	15.85	-	-	-	C	53365147	A	C	53365147	2	2	232	1	0	0	0	0	0	0	0	1	6345	173	6	5		5	GCLC	6	53365147	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	481913	53365147	117749920	1047	16573										
LRRC1	0	genome.wustl.edu	37	chr6	53787580	53787580	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgccattgaccgagtgaccActtctgtgtagagtttcacc	9	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	53787580	53787580	A	C	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	missense	c.1564	p.T522P	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	306	0	0	234	36	13.24	-	-	-	C	53787580	A	C	53787580	3	2	232	1	0	0	0	0	1	0	0	0	9032	159	6	5	1618	5	LRRC1	6	53787580	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	422433	53787580	117327487	1048	16574										
FAM83B	0	genome.wustl.edu	37	chr6	54805005	54805005	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgaatagaaccaataatccAcctggtaattggaaaaagcc	7	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	54805005	54805005	A	C	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	silent	c.1236	p.P412	0.012	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	182	0	0	177	21	10.45	-	-	-	C	54805005	A	C	54805005	2	2	232	1	0	0	0	0	0	0	0	1	5679	146	6	5		5	FAM83B	6	54805005	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1017425	54805005	116310062	1049	16575										
DST	0	genome.wustl.edu	37	chr6	56328483	56328483	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgggatcttcggcctcggggTcggaaagcagccataccctg	14	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	56328483	56328483	T	G	SNP	DST	ENST00000523292	human	ensembl	69_37n	-1	novel	missense	c.272	p.D91A	0.903	NULL	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DST	HGNC	ENSG00000151914	129	0	0	94	27	22.13	-	-	-	G	56328483	T	G	56328483	3	3	232	1	0	0	0	0	1	0	0	0	4818	1654	58	5	633	5	DST	6	56328483	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1523478	56328483	114786584	1050	16576										
DST	0	genome.wustl.edu	37	chr6	56334742	56334742	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcacatttacacttagctAcctgccttgtcacctgccaa	5	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	56334742	56334742	A	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.22397	p.V7466G	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_GAS2_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	130	0	0	102	23	18.25	-	-	-	C	56334742	A	C	56334742	3	2	232	1	0	0	0	0	1	0	0	0	4818	391	14	5	922	5	DST	6	56334742	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6259	56334742	114780325	1051	16577										
DST	0	genome.wustl.edu	37	chr6	56373496	56373496	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttggcttccctctcttccAccagtgtgtgtatgttctcc	8	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	56373496	56373496	A	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.18977	p.V6326G	0.987	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	162	0	0	97	26	21.14	-	-	-	C	56373496	A	C	56373496	3	2	232	1	0	0	0	0	1	0	0	0	4818	159	6	5	4430	5	DST	6	56373496	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38754	56373496	114741571	1052	16578										
DST	0	genome.wustl.edu	37	chr6	56458620	56458620	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgtgatgtatctcaagtcAcctttgtgagaaataacgtc	8	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	56458620	56458620	A	C	SNP	DST	ENST00000518398	human	ensembl	69_37n	-1	known	missense	c.677	p.V226G	0.036	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DST	HGNC	ENSG00000151914	473	0	0	336	52	13.33	-	-	-	C	56458620	A	C	56458620	3	2	232	1	0	0	0	0	1	0	0	0	4818	146	6	5	11041	5	DST	6	56458620	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	85124	56458620	114656447	1053	16579										
PRIM2	0	genome.wustl.edu	37	chr6	57190952	57190952	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctctttacattctccaagtAcctgcctgaaacagtagcta	5	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	57190952	57190952	A	C	SNP	PRIM2	ENST00000274891	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	55	0	0	32	12	27.27	-	-	-	C	57190952	A	C	57190952	1	2	232	0	1	0	0	0	0	0	0	0	12572	406	14	5		5	PRIM2	6	57190952	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	732332	57190952	113924115	1054	16580										
PHF3	0	genome.wustl.edu	37	chr6	64422920	64422920	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcatctcaagtctagcccAcctggatttccatttccagg	7	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	64422920	64422920	A	C	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	silent	c.5436	p.P1812	0.563	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	354	2	0.56	259	36	12.12	-	-	-	C	64422920	A	C	64422920	2	2	232	1	0	0	0	0	0	0	0	1	11910	146	6	5		5	PHF3	6	64422920	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7231968	64422920	106692147	1055	16581										
PHF3	0	genome.wustl.edu	37	chr6	64423052	64423052	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcccatggttccctggccAcctgttgttcatctcccagg	8	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	64423052	64423052	A	C	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	silent	c.5568	p.P1856	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	360	3	0.82	217	38	14.84	-	-	-	C	64423052	A	C	64423052	2	2	232	1	0	0	0	0	0	0	0	1	11910	146	6	5		5	PHF3	6	64423052	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	132	64423052	106692015	1056	16582										
SMAP1	0	genome.wustl.edu	37	chr6	71562340	71562340	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgatgatttctaatcccttAcctgcaactgtcatgccccc	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	71562340	71562340	A	C	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	missense	c.762	p.L254F	0.998	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	282	1	0.35	177	37	17.29	-	-	-	C	71562340	A	C	71562340	3	2	232	1	0	0	0	0	1	0	0	0	14855	388	14	5	792	5	SMAP1	6	71562340	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7139288	71562340	99552727	1057	16583										
KCNQ5	0	genome.wustl.edu	37	chr6	73815081	73815081	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttggcatttctttctttgcActtcctgccgtgagtatctt	7	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	73815081	73815081	A	C	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	silent	c.1020	p.A340	0.997	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	448	3	0.66	325	52	13.72	-	-	-	C	73815081	A	C	73815081	2	2	232	1	0	0	0	0	0	0	0	1	8140	146	6	5		5	KCNQ5	6	73815081	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2252741	73815081	97299986	1058	16584										
KCNQ5	0	genome.wustl.edu	37	chr6	73843278	73843278	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagggcagtcccaccaaagTgcagaagagctggagcttca	13	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	73843278	73843278	T	G	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.1412	p.V471G	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	114	0	0	84	13	13.4	-	-	-	G	73843278	T	G	73843278	3	3	232	1	0	0	0	0	1	0	0	0	8140	1696	59	5	1481	5	KCNQ5	6	73843278	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	28197	73843278	97271789	1059	16585										
COL12A1	0	genome.wustl.edu	37	chr6	75811748	75811748	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcctggctctccagcatcAcctttcatcccttggcgacc	7	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	75811748	75811748	A	C	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.8436	p.G2812	0.294	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	276	1	0.36	210	32	13.01	-	-	-	C	75811748	A	C	75811748	2	2	232	1	0	0	0	0	0	0	0	1	3699	146	6	5		5	COL12A1	6	75811748	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1968470	75811748	95303319	1060	16586										
COL12A1	0	genome.wustl.edu	37	chr6	75887508	75887508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctctgattgggtggggTggtaacttctctgctctctc	11	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	75887508	75887508	T	G	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2308	p.T770P	0.055	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	513	0	0	459	60	11.52	-	-	-	G	75887508	T	G	75887508	3	3	232	1	0	0	0	0	1	0	0	0	3699	1696	59	5	7103	5	COL12A1	6	75887508	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	75760	75887508	95227559	1061	16587										
COL12A1	0	genome.wustl.edu	37	chr6	75890804	75890804	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaccacagtgacctcatcaTccccagccgcttccttgtag	6	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	75890804	75890804	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2015	p.D672G	0.241	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	257	1	0.38	167	46	21.5	-	-	-	C	75890804	T	C	75890804	3	2	232	1	0	0	0	0	1	0	0	0	3699	1435	50	5	7400	5	COL12A1	6	75890804	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3296	75890804	95224263	1062	16588										
COX7A2	0	genome.wustl.edu	37	chr6	75953491	75953491	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaccgccacaactgaacaccAccaacgaaaatggccacgcc	6	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	75953491	75953491	A	C	SNP	COX7A2	ENST00000370081	human	ensembl	69_37n	-1	known	missense	c.56	p.V19G	0.000	NULL	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a	-	no_errors	COX7A2	HGNC	ENSG00000112695	185	0	0	289	37	11.31	-	-	-	C	75953491	A	C	75953491	3	2	232	1	0	0	0	0	1	0	0	0	3810	159	6	5	307	5	COX7A2	6	75953491	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	62687	75953491	95161576	1063	16589										
FILIP1	0	genome.wustl.edu	37	chr6	76022235	76022235	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagcgaaggacagtgccggTggaaacctccttttcggctg	14	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	76022235	76022235	T	G	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.3313	p.T1105P	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	286	0	0	199	25	11.06	-	-	-	G	76022235	T	G	76022235	3	3	232	1	0	0	0	0	1	0	0	0	5940	1696	59	5	336	5	FILIP1	6	76022235	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	68744	76022235	95092832	1064	16590										
FILIP1	0	genome.wustl.edu	37	chr6	76023944	76023944	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccataacttttccttgttccAccttaaaatttttattgagt	3	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	76023944	76023944	A	C	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.1604	p.V535G	0.957	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	218	0	0	138	16	10.39	-	-	-	C	76023944	A	C	76023944	3	2	232	1	0	0	0	0	1	0	0	0	5940	159	6	5	2045	5	FILIP1	6	76023944	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1709	76023944	95091123	1065	16591										
MYO6	0	genome.wustl.edu	37	chr6	76623917	76623917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagtaagaaaaaaggctggTggtatgcccattttgatgga	13	4	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	76623917	76623917	T	G	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.3580	p.W1194G	1.000	NULL	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	230	1	0.43	204	31	13.14	-	-	-	G	76623917	T	G	76623917	3	3	232	1	0	0	0	0	1	0	0	0	10153	1696	59	5	3707	5	MYO6	6	76623917	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	599973	76623917	94491150	1066	16592										
MYO6	0	genome.wustl.edu	37	chr6	76624691	76624691	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagcagacaggctcggcccAcctatgcaacagccatgctg	11	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	76624691	76624691	A	C	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.3823	p.T1275P	1.000	NULL	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	46	0	0	30	15	33.33	-	-	-	C	76624691	A	C	76624691	3	2	232	1	0	0	0	0	1	0	0	0	10153	159	6	5	3954	5	MYO6	6	76624691	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	774	76624691	94490376	1067	16593										
PRSS35	0	genome.wustl.edu	37	chr6	84233531	84233531	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttaggagaaagagacaggTgtatggcaccgacagcaggt	15	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	84233531	84233531	T	G	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	missense	c.371	p.V124G	1.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	197	0	0	118	18	13.14	-	-	-	G	84233531	T	G	84233531	3	3	232	1	0	0	0	0	1	0	0	0	12704	1696	59	5	373	5	PRSS35	6	84233531	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7608840	84233531	86881536	1068	16594										
TBX18	0	genome.wustl.edu	37	chr6	85446981	85446981	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgggcacaggcagaatagtCagcaggggccagactacaca	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	85446981	85446981	C	T	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	missense	c.1246	p.D416N	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	88	0	0	51	20	28.17	-	-	-	T	85446981	C	T	85446981	3	4	232	1	0	0	0	0	1	0	0	0	15748	826	29	2	581	2	TBX18	6	85446981	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	1213450	85446981	85668086	1069	16595										
GJB7	0	genome.wustl.edu	37	chr6	87994373	87994373	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaccaccagaagtgaaggTgtggagaccattatcagttg	11	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	87994373	87994373	T	G	SNP	GJB7	ENST00000296882	human	ensembl	69_37n	-1	known	silent	c.258	p.T86	0.050	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB7	HGNC	ENSG00000164411	398	0	0	325	37	10.22	-	-	-	G	87994373	T	G	87994373	2	3	232	1	0	0	0	0	0	0	0	1	6465	1683	59	5		5	GJB7	6	87994373	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2547392	87994373	83120694	1070	16596										
GABRR1	0	genome.wustl.edu	37	chr6	89907847	89907847	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacgaaaaacatgtcagggAcccagatcttcttgaccagc	9	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	89907847	89907847	A	C	SNP	GABRR1	ENST00000454853	human	ensembl	69_37n	-1	known	missense	c.464	p.V155G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276	446	2	0.45	250	30	10.56	-	-	-	C	89907847	A	C	89907847	3	2	232	1	0	0	0	0	1	0	0	0	6225	275	10	5	999	5	GABRR1	6	89907847	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1913474	89907847	81207220	1071	16597										
MDN1	0	genome.wustl.edu	37	chr6	90504309	90504309	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacgcaccagcgaaccaaggTgtcatggcttctgaggagag	13	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	90504309	90504309	T	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.541	p.T181P	1.000	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	106	0	0	90	19	17.43	-	-	-	G	90504309	T	G	90504309	3	3	232	1	0	0	0	0	1	0	0	0	9486	1696	59	5	16649	5	MDN1	6	90504309	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	596462	90504309	80610758	1072	16598										
FHL5	0	genome.wustl.edu	37	chr6	97058462	97058462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcaggtgataacttcaggTgggataacattttgtgacca	12	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	97058462	97058462	T	G	SNP	FHL5	ENST00000326771	human	ensembl	69_37n	1	known	silent	c.519	p.G173	0.993	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214	179	1	0.56	132	24	15.38	-	-	-	G	97058462	T	G	97058462	2	3	232	1	0	0	0	0	0	0	0	1	5927	1683	59	5		5	FHL5	6	97058462	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6554153	97058462	74056605	1073	16599										
ASCC3	0	genome.wustl.edu	37	chr6	100964164	100964164	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggactcgatggaggtccgAcccctagcatgtgggccctt	14	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	100964164	100964164	A	C	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	silent	c.5967	p.G1989	0.105	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	148	0	0	101	27	20.77	-	-	-	C	100964164	A	C	100964164	2	2	232	1	0	0	0	0	0	0	0	1	1037	262	10	5		5	ASCC3	6	100964164	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3905702	100964164	70150903	1074	16600										
AIM1	0	genome.wustl.edu	37	chr6	106987279	106987279	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccatggtggctatttaggTggctgatttatgaagaacct	11	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	106987279	106987279	T	G	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.3496	p.W1166G	0.997	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	188	0	0	134	23	14.65	-	-	-	G	106987279	T	G	106987279	3	3	232	1	0	0	0	0	1	0	0	0	430	1710	59	5	3522	5	AIM1	6	106987279	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6023115	106987279	64127788	1075	16601										
FIG4	0	genome.wustl.edu	37	chr6	110064465	110064465	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaactatgatgcctaaaccAcctattacatgtgtgtggag	8	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	110064465	110064465	A	C	SNP	FIG4	ENST00000230124	human	ensembl	69_37n	1	known	silent	c.1029	p.P343	0.960	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367	182	0	0	104	35	25	-	-	-	C	110064465	A	C	110064465	2	2	232	1	0	0	0	0	0	0	0	1	5934	146	6	5		5	FIG4	6	110064465	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3077186	110064465	61050602	1076	16602										
SLC22A16	0	genome.wustl.edu	37	chr6	110768179	110768179	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcttgtggcccacaagaccAcccggcgtcctagcctgaaa	10	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	110768179	110768179	A	C	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.548	p.V183G	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	158	1	0.62	127	23	15.33	-	-	-	C	110768179	A	C	110768179	3	2	232	1	0	0	0	0	1	0	0	0	14536	159	6	5	1209	5	SLC22A16	6	110768179	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	703714	110768179	60346888	1077	16603										
SLC16A10	0	genome.wustl.edu	37	chr6	111498533	111498533	+	Frame_Shift_Del	DEL	A	A	-													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagcgccttggactggtgAatggcattgtcactgctggc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	111498533	111498533	A	-	DEL	SLC16A10	ENST00000368851	human	ensembl	69_37n	1	known	frame_shift_del	c.607	p.N203fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394	103	0	0	70	8	10	-	-	-	-	111498533	A	-	111498533	7	5	232	1	0	1	0	1	0	0	0	0	14492	246	9	0	617	0	SLC16A10	6	111498533	Frame_Shift_Del	DEL	A	TCGA-A8-A0A6-01A-12W-A071-09	730354	111498533	59616534	1078	16604										
TRAF3IP2	0	genome.wustl.edu	37	chr6	111913188	111913188	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccttatatttggagcaggTggttctgattcctcttccgg	10	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	111913188	111913188	T	G	SNP	TRAF3IP2	ENST00000340026	human	ensembl	69_37n	-1	known	silent	c.129	p.P43	0.362	NULL	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972	121	0	0	100	16	13.79	-	-	-	G	111913188	T	G	111913188	2	3	232	1	0	0	0	0	0	0	0	1	16537	1683	59	5		5	TRAF3IP2	6	111913188	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	414655	111913188	59201879	1079	16605										
WISP3	0	genome.wustl.edu	37	chr6	112386070	112386070	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtggggccattggatgcacAcctctgttcataccaaagct	10	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	112386070	112386070	A	C	SNP	WISP3	ENST00000361714	human	ensembl	69_37n	1	known	silent	c.513	p.T171	0.001	pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761	316	0	0	194	25	11.36	-	-	-	C	112386070	A	C	112386070	2	2	232	1	0	0	0	0	0	0	0	1	17471	146	6	5		5	WISP3	6	112386070	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	472882	112386070	58728997	1080	16606										
WISP3	0	genome.wustl.edu	37	chr6	112386121	112386121	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactgctctggagctaaaggTggaaagaagtctgatcagtc	12	8	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	112386121	112386121	T	G	SNP	WISP3	ENST00000361714	human	ensembl	69_37n	1	known	silent	c.564	p.G188	0.000	pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761	290	1	0.34	191	28	12.79	-	-	-	G	112386121	T	G	112386121	2	3	232	1	0	0	0	0	0	0	0	1	17471	1683	59	5		5	WISP3	6	112386121	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51	112386121	58728946	1081	16607										
LAMA4	0	genome.wustl.edu	37	chr6	112450275	112450275	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacctccacatctctatccAccctgtgtttgtaacagagg	6	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	112450275	112450275	A	C	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.4136	p.V1379G	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	182	0	0	109	30	21.58	-	-	-	C	112450275	A	C	112450275	3	2	232	1	0	0	0	0	1	0	0	0	8662	159	6	5	1371	5	LAMA4	6	112450275	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	64154	112450275	58664792	1082	16608										
HS3ST5	0	genome.wustl.edu	37	chr6	114379169	114379169	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccttgtgcctcctttcctcAccccaatgataatggccttg	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	114379169	114379169	A	C	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	missense	c.293	p.V98G	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	145	0	0	98	21	17.5	-	-	-	C	114379169	A	C	114379169	3	2	232	1	0	0	0	0	1	0	0	0	7419	159	6	5	751	5	HS3ST5	6	114379169	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1928894	114379169	56735898	1083	16609										
FRK	0	genome.wustl.edu	37	chr6	116381277	116381277	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccagaacttgaagtttgtcAcctgctcggaagctcaagtc	9	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	116381277	116381277	A	C	SNP	FRK	ENST00000368626	human	ensembl	69_37n	-1	known	silent	c.198	p.G66	0.964	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	FRK	HGNC	ENSG00000111816	297	0	0	275	42	13.21	-	-	-	C	116381277	A	C	116381277	2	2	232	1	0	0	0	0	0	0	0	1	6097	146	6	5		5	FRK	6	116381277	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2002108	116381277	54733790	1084	16610										
RSPH4A	0	genome.wustl.edu	37	chr6	116949424	116949424	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggaggaagaggcagaaggTgggcgaaatagctttgagga	19	3	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	116949424	116949424	T	G	SNP	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	silent	c.1554	p.G518	0.001	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	267	0	0	194	44	18.49	-	-	-	G	116949424	T	G	116949424	2	3	232	1	0	0	0	0	0	0	0	1	13792	1683	59	5		5	RSPH4A	6	116949424	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	568147	116949424	54165643	1085	16611										
ROS1	0	genome.wustl.edu	37	chr6	117642512	117642512	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcgtttataagcactgtcAccccttccttggcacttttt	5	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	117642512	117642512	A	C	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.5687	p.V1896G	0.003	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	251	0	0	176	33	15.79	-	-	-	C	117642512	A	C	117642512	3	2	232	1	0	0	0	0	1	0	0	0	13617	159	6	5	1392	5	ROS1	6	117642512	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	693088	117642512	53472555	1086	16612										
ROS1	0	genome.wustl.edu	37	chr6	117711008	117711008	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcaggaggtaaaagacatAcctgacacaggaacaaaaga	9	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	117711008	117711008	A	C	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.1264	p.Y422D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	120	0	0	73	17	18.89	-	-	-	C	117711008	A	C	117711008	3	2	232	1	0	0	0	0	1	0	0	0	13617	405	14	5	5907	5	ROS1	6	117711008	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	68496	117711008	53404059	1087	16613										
SLC35F1	0	genome.wustl.edu	37	chr6	118635359	118635359	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaggtggaaccctcagtcAcctacaccagcctgggccag	10	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	118635359	118635359	A	C	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	missense	c.1171	p.T391P	1.000	NULL	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	148	1	0.67	131	34	20.36	-	-	-	C	118635359	A	C	118635359	3	2	232	1	0	0	0	0	1	0	0	0	14677	159	6	5	1201	5	SLC35F1	6	118635359	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	924351	118635359	52479708	1088	16614										
FAM184A	0	genome.wustl.edu	37	chr6	119282952	119282952	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgtcttgggccctttaggTggcactggctgtggaagtgg	16	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	119282952	119282952	T	G	SNP	FAM184A	ENST00000475529	human	ensembl	69_37n	-1	known	missense	c.1079	p.H360P	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM184A	HGNC	ENSG00000111879	187	0	0	150	26	14.77	-	-	-	G	119282952	T	G	119282952	3	3	232	1	0	0	0	0	1	0	0	0	5552	1683	59	5	115	5	FAM184A	6	119282952	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	647593	119282952	51832115	1089	16615										
HDDC2	0	genome.wustl.edu	37	chr6	125621783	125621783	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctctggacatttctgtatAcccagccagttcgtgggact	10	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	125621783	125621783	A	C	SNP	HDDC2	ENST00000398153	human	ensembl	69_37n	-1	known	missense	c.107	p.V36G	1.000	NULL	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906	133	0	0	74	26	26	-	-	-	C	125621783	A	C	125621783	3	2	232	1	0	0	0	0	1	0	0	0	7067	391	14	5	527	5	HDDC2	6	125621783	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6338831	125621783	45493284	1090	16616										
THEMIS	0	genome.wustl.edu	37	chr6	128134916	128134916	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaggtggtttccttcaggTgcttctatgacttcagtcac	11	10	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	128134916	128134916	T	G	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	silent	c.870	p.A290	0.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	186	0	0	174	25	12.56	-	-	-	G	128134916	T	G	128134916	2	3	232	1	0	0	0	0	0	0	0	1	15955	1683	59	5		5	THEMIS	6	128134916	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2513133	128134916	42980151	1091	16617										
PTPRK	0	genome.wustl.edu	37	chr6	128718727	128718727	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccttggggcatctcgggTggtagataatgaggctcttg	14	8	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	128718727	128718727	T	G	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	silent	c.207	p.P69	0.570	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	264	1	0.38	193	43	18.14	-	-	-	G	128718727	T	G	128718727	2	3	232	1	0	0	0	0	0	0	0	1	12888	1683	59	5		5	PTPRK	6	128718727	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	583811	128718727	42396340	1092	16618										
LAMA2	0	genome.wustl.edu	37	chr6	129581940	129581940	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagaagtgtgtcagtgcccAccagggtatactggctcctc	12	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	129581940	129581940	A	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	silent	c.2181	p.P727	0.972	pfam_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	170	1	0.58	182	23	11.22	-	-	-	C	129581940	A	C	129581940	2	2	232	1	0	0	0	0	0	0	0	1	8660	146	6	5		5	LAMA2	6	129581940	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	863213	129581940	41533127	1093	16619										
L3MBTL3	0	genome.wustl.edu	37	chr6	130370959	130370959	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgcctactggacatctccAcctggatgtcccacaggtac	8	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	130370959	130370959	A	C	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	silent	c.273	p.P91	1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	161	0	0	170	23	11.92	-	-	-	C	130370959	A	C	130370959	2	2	232	1	0	0	0	0	0	0	0	1	8647	146	6	5		5	L3MBTL3	6	130370959	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	789019	130370959	40744108	1094	16620										
SAMD3	0	genome.wustl.edu	37	chr6	130465948	130465948	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acacaggtgtggacacttgcAcctgaaaaaaagagtggagt	12	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	130465948	130465948	A	C	SNP	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	missense	c.1280	p.V427G	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	126	0	0	101	12	10.62	-	-	-	C	130465948	A	C	130465948	3	2	232	1	0	0	0	0	1	0	0	0	13906	173	6	5	286	5	SAMD3	6	130465948	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	94989	130465948	40649119	1095	16621										
TMEM200A	0	genome.wustl.edu	37	chr6	130762567	130762567	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtggttcctttgcccaacAccagtgaatccttccagccc	7	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	130762567	130762567	A	C	SNP	TMEM200A	ENST00000296978	human	ensembl	69_37n	1	known	missense	c.1000	p.T334P	0.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484	201	0	0	198	27	12	-	-	-	C	130762567	A	C	130762567	3	2	232	1	0	0	0	0	1	0	0	0	16218	159	6	5	1002	5	TMEM200A	6	130762567	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	296619	130762567	40352500	1096	16622										
ARG1	0	genome.wustl.edu	37	chr6	131904271	131904271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagactaggaattggcaaggTgatggaagaaacactcagct	12	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	131904271	131904271	T	G	SNP	ARG1	ENST00000356962	human	ensembl	69_37n	1	known	missense	c.656	p.V219G	1.000	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG1	HGNC	ENSG00000118520	207	1	0.48	110	24	17.78	-	-	-	G	131904271	T	G	131904271	3	3	232	1	0	0	0	0	1	0	0	0	859	1696	59	5	654	5	ARG1	6	131904271	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1141704	131904271	39210796	1097	16623										
MED23	0	genome.wustl.edu	37	chr6	131948548	131948548	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgctcacctgagaaagaccAccccaaaactgtctgaaggc	9	14	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	131948548	131948548	A	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	silent	c.147	p.G49	0.998	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	298	3	1	205	33	13.87	-	-	-	C	131948548	A	C	131948548	2	2	232	1	0	0	0	0	0	0	0	1	9512	146	6	5		5	MED23	6	131948548	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	44277	131948548	39166519	1098	16624										
OR2A4	0	genome.wustl.edu	37	chr6	132022351	132022351	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgatgtcgacgaccgccaggTgtgagaggaagaagtacatg	15	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	132022351	132022351	T	G	SNP	OR2A4	ENST00000315453	human	ensembl	69_37n	-1	known	missense	c.191	p.H64P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658	55	0	0	33	9	21.43	-	-	-	G	132022351	T	G	132022351	3	3	232	1	0	0	0	0	1	0	0	0	11052	1696	59	5	744	5	OR2A4	6	132022351	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	73803	132022351	39092716	1099	16625										
ENPP3	0	genome.wustl.edu	37	chr6	132043535	132043535	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttgactgtttctgccctcAcctacaaaatgtaagtaaca	5	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	132043535	132043535	A	C	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	missense	c.1736	p.H579P	0.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	151	1	0.66	144	18	11.04	-	-	-	C	132043535	A	C	132043535	3	2	232	1	0	0	0	0	1	0	0	0	5168	159	6	5	1806	5	ENPP3	6	132043535	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21184	132043535	39071532	1100	16626										
ENPP1	0	genome.wustl.edu	37	chr6	132201104	132201104	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctgtcttctttcccagcAccagtttatgagtggataca	7	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	132201104	132201104	A	C	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.2030	p.H677P	1.000	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	288	0	0	186	23	11	-	-	-	C	132201104	A	C	132201104	3	2	232	1	0	0	0	0	1	0	0	0	5166	159	6	5	2108	5	ENPP1	6	132201104	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	157569	132201104	38913963	1101	16627										
ENPP1	0	genome.wustl.edu	37	chr6	132203610	132203610	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttacgggttcctctccccAccacgtaagttttttcctct	6	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	132203610	132203610	A	C	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	silent	c.2226	p.P742	0.912	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	181	0	0	111	30	21.13	-	-	-	C	132203610	A	C	132203610	2	2	232	1	0	0	0	0	0	0	0	1	5166	146	6	5		5	ENPP1	6	132203610	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2506	132203610	38911457	1102	16628										
TAAR8	0	genome.wustl.edu	37	chr6	132874690	132874690	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcctttatgggcttcctgAcccctgcctatatctatgaa	7	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	132874690	132874690	A	C	SNP	TAAR8	ENST00000275200	human	ensembl	69_37n	1	known	missense	c.859	p.T287P	0.718	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Trace_amine_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAAR8	HGNC	ENSG00000146385	223	2	0.89	156	27	14.75	-	-	-	C	132874690	A	C	132874690	3	2	232	1	0	0	0	0	1	0	0	0	15585	275	10	5	861	5	TAAR8	6	132874690	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	671080	132874690	38240377	1103	16629										
SGK1	0	genome.wustl.edu	37	chr6	134492862	134492862	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcttatgaagcacctcaggTgcgagatactgaaaaacaga	10	8	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	134492862	134492862	T	G	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	silent	c.1080	p.A360	0.428	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	50	0	0	35	4	10.26	-	-	-	G	134492862	T	G	134492862	2	3	232	1	0	0	0	0	0	0	0	1	14295	1683	59	5		5	SGK1	6	134492862	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1618172	134492862	36622205	1104	16630										
HBS1L	0	genome.wustl.edu	37	chr6	135318630	135318630	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcttgccagactttttcAccggtgctggggttgaactc	11	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	135318630	135318630	A	C	SNP	HBS1L	ENST00000367837	human	ensembl	69_37n	-1	known	missense	c.704	p.V235G	0.962	NULL	pfam_DUF1916,pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	HBS1L	HGNC	ENSG00000112339	157	0	0	120	17	12.41	-	-	-	C	135318630	A	C	135318630	3	2	232	1	0	0	0	0	1	0	0	0	7038	159	6	5	1402	5	HBS1L	6	135318630	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	825768	135318630	35796437	1105	16631										
BCLAF1	0	genome.wustl.edu	37	chr6	136599746	136599746	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccagacaggtctataaccAcctcgatgatatctacctcc	5	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	136599746	136599746	A	C	SNP	BCLAF1	ENST00000531224	human	ensembl	69_37n	-1	known	silent	c.273	p.G91	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	208	1	0.48	190	28	12.79	-	-	-	C	136599746	A	C	136599746	2	2	232	1	0	0	0	0	0	0	0	1	1387	146	6	5		5	BCLAF1	6	136599746	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1281116	136599746	34515321	1106	16632										
AIG1	0	genome.wustl.edu	37	chr6	143654457	143654457	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaactggcatgtgggtgtAccctttcctggaacacattg	11	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	143654457	143654457	A	C	SNP	AIG1	ENST00000275235	human	ensembl	69_37n	1	known	missense	c.554	p.Y185S	1.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	AIG1	HGNC	ENSG00000146416	266	0	0	217	33	13.2	-	-	-	C	143654457	A	C	143654457	3	2	232	1	0	0	0	0	1	0	0	0	429	391	14	5	572	5	AIG1	6	143654457	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7054711	143654457	27460610	1107	16633										
PHACTR2	0	genome.wustl.edu	37	chr6	144081677	144081677	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggggccagccacaaaggTgatgaagtgcctcccattaa	12	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	144081677	144081677	T	G	SNP	PHACTR2	ENST00000440869	human	ensembl	69_37n	1	known	silent	c.594	p.G198	0.998	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	121	0	0	82	17	17	-	-	-	G	144081677	T	G	144081677	2	3	232	1	0	0	0	0	0	0	0	1	11884	1683	59	5		5	PHACTR2	6	144081677	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	427220	144081677	27033390	1108	16634										
PHACTR2	0	genome.wustl.edu	37	chr6	144086569	144086569	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagcagccaataacttctcAcctgtcctcagacacaacaa	4	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	144086569	144086569	A	C	SNP	PHACTR2	ENST00000440869	human	ensembl	69_37n	1	known	missense	c.866	p.H289P	0.085	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	142	1	0.69	138	27	16.36	-	-	-	C	144086569	A	C	144086569	3	2	232	1	0	0	0	0	1	0	0	0	11884	159	6	5	905	5	PHACTR2	6	144086569	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4892	144086569	27028498	1109	16635										
FBXO30	0	genome.wustl.edu	37	chr6	146125879	146125879	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accatagtaagctaaagggcAcctctgttccatccagccat	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	146125879	146125879	A	C	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.1663	p.C555G	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	308	0	0	228	35	13.26	-	-	-	C	146125879	A	C	146125879	3	2	232	1	0	0	0	0	1	0	0	0	5786	159	6	5	582	5	FBXO30	6	146125879	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2039310	146125879	24989188	1110	16636										
FBXO30	0	genome.wustl.edu	37	chr6	146126453	146126453	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttttttccaacacaattcAccttcaccttcatcatctgg	2	14	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	146126453	146126453	A	C	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	silent	c.1089	p.G363	0.188	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	333	3	0.89	254	33	11.5	-	-	-	C	146126453	A	C	146126453	2	2	232	1	0	0	0	0	0	0	0	1	5786	146	6	5		5	FBXO30	6	146126453	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	574	146126453	24988614	1111	16637										
FBXO30	0	genome.wustl.edu	37	chr6	146126544	146126544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccctaagttgtgctgccAccgcaagtgagctggaaggt	12	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	146126544	146126544	A	C	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.998	p.V333G	0.959	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	263	0	0	196	33	14.35	-	-	-	C	146126544	A	C	146126544	3	2	232	1	0	0	0	0	1	0	0	0	5786	159	6	5	1247	5	FBXO30	6	146126544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	91	146126544	24988523	1112	16638										
SASH1	0	genome.wustl.edu	37	chr6	148865694	148865694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggcagccccgccagccccAccagccctagcgactgtccc	11	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	148865694	148865694	A	C	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.3088	p.T1030P	0.007	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	52	0	0	33	15	31.25	-	-	-	C	148865694	A	C	148865694	3	2	232	1	0	0	0	0	1	0	0	0	13935	159	6	5	3158	5	SASH1	6	148865694	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2739150	148865694	22249373	1113	16639										
LRP11	0	genome.wustl.edu	37	chr6	150164229	150164229	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaggttccctcctgtaggTgggacagcttcagggttcct	13	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	150164229	150164229	T	G	SNP	LRP11	ENST00000239367	human	ensembl	69_37n	-1	known	missense	c.803	p.H268P	1.000	superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_PKD_dom,superfamily_LDrepeatLR_classA_rpt,smart_MANSC_N,smart_PKD/Chitinase_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	LRP11	HGNC	ENSG00000120256	67	0	0	49	10	16.95	-	-	-	G	150164229	T	G	150164229	3	3	232	1	0	0	0	0	1	0	0	0	9019	1696	59	5	719	5	LRP11	6	150164229	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1298535	150164229	20950838	1114	16640										
ULBP2	0	genome.wustl.edu	37	chr6	150266701	150266701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcagctggagaattacacAcccaagggtaagtttcagat	9	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	150266701	150266701	A	C	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	1	known	silent	c.342	p.T114	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	143	0	0	64	13	16.88	-	-	-	C	150266701	A	C	150266701	2	2	232	1	0	0	0	0	0	0	0	1	17070	146	6	5		5	ULBP2	6	150266701	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	102472	150266701	20848366	1115	16641										
ULBP3	0	genome.wustl.edu	37	chr6	150386621	150386621	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagaccatcttgaagaaggTggtcagtccgctatccttct	10	10	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	150386621	150386621	T	G	SNP	ULBP3	ENST00000367339	human	ensembl	69_37n	-1	known	missense	c.541	p.T181P	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP3	HGNC	ENSG00000131019	102	1	0.97	86	14	14	-	-	-	G	150386621	T	G	150386621	3	3	232	1	0	0	0	0	1	0	0	0	17071	1696	59	5	200	5	ULBP3	6	150386621	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	119920	150386621	20728446	1116	16642										
AKAP12	0	genome.wustl.edu	37	chr6	151670797	151670797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgaagtccacgtcagcaccgTggaggagagaaccgaagagc	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	151670797	151670797	T	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.1271	p.V424G	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	112	0	0	86	13	13.13	-	-	-	G	151670797	T	G	151670797	3	3	232	1	0	0	0	0	1	0	0	0	448	1696	59	5	1310	5	AKAP12	6	151670797	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1284176	151670797	19444270	1117	16643			8	38	120989798	5	5	2218	T		7.143832e-05
AKAP12	0	genome.wustl.edu	37	chr6	151670917	151670917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaacctgccaaggagctggTgaagctcaaagaaacgtgtg	13	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	151670917	151670917	T	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.1391	p.V464G	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	123	1	0.81	130	22	14.47	-	-	-	G	151670917	T	G	151670917	3	3	232	1	0	0	0	0	1	0	0	0	448	1696	59	5	1430	5	AKAP12	6	151670917	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	120	151670917	19444150	1118	16644			8	38	120989798	5	5	2218	T		7.143832e-05
AKAP12	0	genome.wustl.edu	37	chr6	151670989	151670989	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcagtcctgatgagaaggTgctgtccaaaccccccgaag	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	151670989	151670989	T	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.1463	p.V488G	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	147	1	0.67	140	24	14.63	-	-	-	G	151670989	T	G	151670989	3	3	232	1	0	0	0	0	1	0	0	0	448	1696	59	5	1502	5	AKAP12	6	151670989	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	72	151670989	19444078	1119	16645			8	38	120989798	5	5	2218	T		7.143832e-05
AKAP12	0	genome.wustl.edu	37	chr6	151671392	151671392	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggtgacgcccaagaagcgTgttagacggccttcggaaag	14	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	151671392	151671392	T	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	silent	c.1866	p.R622	0.000	pfam_Pkinase-A_anch_WSK-motif	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	100	0	0	82	15	15.31	-	-	-	G	151671392	T	G	151671392	2	3	232	1	0	0	0	0	0	0	0	1	448	1683	59	5		5	AKAP12	6	151671392	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	403	151671392	19443675	1120	16646			8	38	120989798	5	5	2218	T		7.143832e-05
AKAP12	0	genome.wustl.edu	37	chr6	151673014	151673014	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctatcccccctgactcggTggaaacccctacagacagtg	10	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	151673014	151673014	T	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.3488	p.V1163G	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	205	0	0	138	34	19.65	-	-	-	G	151673014	T	G	151673014	3	3	232	1	0	0	0	0	1	0	0	0	448	1696	59	5	3527	5	AKAP12	6	151673014	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1622	151673014	19442053	1121	16647			8	38	120989798	5	5	2218	T		7.143832e-05
SYNE1	0	genome.wustl.edu	37	chr6	152497560	152497560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggtccaggagatgctgccAccggtcgttgacctttccca	12	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	152497560	152497560	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.23596	p.W7866G	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	338	1	0.29	277	38	12.06	-	-	-	C	152497560	A	C	152497560	3	2	232	1	0	0	0	0	1	0	0	0	15537	159	6	5	2938	5	SYNE1	6	152497560	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	824546	152497560	18617507	1122	16648										
SYNE1	0	genome.wustl.edu	37	chr6	152688402	152688402	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacttttgtcggatgtcgggTggcagtatgaatccagcatg	13	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	152688402	152688402	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.9923	p.H3308P	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	154	1	0.65	122	21	14.69	-	-	-	G	152688402	T	G	152688402	3	3	232	1	0	0	0	0	1	0	0	0	15537	1696	59	5	16883	5	SYNE1	6	152688402	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	190842	152688402	18426665	1123	16649										
SYNJ2	0	genome.wustl.edu	37	chr6	158507990	158507990	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccccaaccggcctcggccAcctcaacccccgcagagacc	8	22	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	158507990	158507990	A	C	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	silent	c.3312	p.P1104	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	40	0	0	42	10	19.23	-	-	-	C	158507990	A	C	158507990	2	2	232	1	0	0	0	0	0	0	0	1	15545	146	6	5		5	SYNJ2	6	158507990	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5819588	158507990	12607077	1124	16650										
TULP4	0	genome.wustl.edu	37	chr6	158850769	158850769	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctgtgtgtgtccccaaggTgagtgatttcacgtggagcc	13	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	158850769	158850769	T	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.383	p.V128G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	220	1	0.45	183	30	14.02	-	-	-	G	158850769	T	G	158850769	3	3	232	1	0	0	0	0	1	0	0	0	16873	1710	59	5	393	5	TULP4	6	158850769	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	342779	158850769	12264298	1125	16651										
TULP4	0	genome.wustl.edu	37	chr6	158922909	158922909	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggacagcagaacatgcaggTgacagtgccacccagtaccc	12	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	158922909	158922909	T	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.2214	p.G738	0.979	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	166	0	0	83	20	19.42	-	-	-	G	158922909	T	G	158922909	2	3	232	1	0	0	0	0	0	0	0	1	16873	1683	59	5		5	TULP4	6	158922909	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	72140	158922909	12192158	1126	16652										
TAGAP	0	genome.wustl.edu	37	chr6	159457880	159457880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttagtgtttggtttgtcAcccggctctcgaggcactcc	11	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	159457880	159457880	A	C	SNP	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	missense	c.1175	p.V392G	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	82	0	0	42	16	27.12	-	-	-	C	159457880	A	C	159457880	3	2	232	1	0	0	0	0	1	0	0	0	15629	159	6	5	1024	5	TAGAP	6	159457880	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	534971	159457880	11657187	1127	16653										
FNDC1	0	genome.wustl.edu	37	chr6	159646610	159646610	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagggggaattggccaggTgggattataagcagatcgct	16	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	159646610	159646610	T	G	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.928	p.W310G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	280	2	0.7	204	41	16.73	-	-	-	G	159646610	T	G	159646610	3	3	232	1	0	0	0	0	1	0	0	0	6014	1696	59	5	958	5	FNDC1	6	159646610	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	188730	159646610	11468457	1128	16654										
PNLDC1	0	genome.wustl.edu	37	chr6	160234652	160234652	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagatgaatttcccgagggTgtcgaatctttcggaagtct	13	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	160234652	160234652	T	G	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	missense	c.926	p.V309G	0.930	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	124	0	0	171	24	12.24	-	-	-	G	160234652	T	G	160234652	3	3	232	1	0	0	0	0	1	0	0	0	12222	1696	59	5	968	5	PNLDC1	6	160234652	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	588042	160234652	10880415	1129	16655										
LPA	0	genome.wustl.edu	37	chr6	161006194	161006194	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcgataactctgtccatcAcctcggtagcagtcctggac	8	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	161006194	161006194	A	C	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	silent	c.4173	p.G1391	0.003	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	367	1	0.27	275	37	11.78	-	-	-	C	161006194	A	C	161006194	2	2	232	1	0	0	0	0	0	0	0	1	8969	146	6	5		5	LPA	6	161006194	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	771542	161006194	10108873	1130	16656										
LPA	0	genome.wustl.edu	37	chr6	161026213	161026213	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccgtggtagcactcctgcAccccaggcctttgctcagtt	9	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	161026213	161026213	A	C	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.2810	p.V937G	0.979	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	499	3	0.6	530	66	11.04	-	-	-	C	161026213	A	C	161026213	3	2	232	1	0	0	0	0	1	0	0	0	8969	159	6	5	3400	5	LPA	6	161026213	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20019	161026213	10088854	1131	16657										
TTLL2	0	genome.wustl.edu	37	chr6	167754656	167754656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttaaatggtctaagaaatgAggggagagaagccagtaatg	13	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	167754656	167754656	A	G	SNP	TTLL2	ENST00000239587	human	ensembl	69_37n	1	known	missense	c.1268	p.E423G	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC	ENSG00000120440	175	0	0	238	27	10.19	-	-	-	G	167754656	A	G	167754656	3	3	232	1	0	0	0	0	1	0	0	0	16824	304	11	5	1278	5	TTLL2	6	167754656	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6728443	167754656	3360411	1132	16658										
MLLT4	0	genome.wustl.edu	37	chr6	168291664	168291664	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgggtctggctatggctccAcccttcctccggagaagctg	12	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	168291664	168291664	A	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.1132	p.T378P	0.312	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	167	0	0	119	32	21.19	-	-	-	C	168291664	A	C	168291664	3	2	232	1	0	0	0	0	1	0	0	0	9700	159	6	5	1162	5	MLLT4	6	168291664	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	537008	168291664	2823403	1133	16659										
MLLT4	0	genome.wustl.edu	37	chr6	168347558	168347558	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgaaaaatagagctgatcAccgttccagccccaacgtag	9	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	6	168347558	168347558	A	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.3509	p.H1170P	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	251	1	0.4	125	25	16.56	-	-	-	C	168347558	A	C	168347558	3	2	232	1	0	0	0	0	1	0	0	0	9700	159	6	5	3611	5	MLLT4	6	168347558	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55894	168347558	2767509	1134	16660										
SDK1	0	genome.wustl.edu	37	chr7	4051820	4051820	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attatggtccagtggcagccAcccccagaaacagagcacaa	9	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	4051820	4051820	A	C	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.2373	p.P791	0.016	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	152	0	0	162	44	21.15	-	-	-	C	4051820	A	C	4051820	2	2	232	1	0	0	0	0	0	0	0	1	14056	146	6	5		5	SDK1	7	4051820	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		4051820	155086843	1135	16661										
SDK1	0	genome.wustl.edu	37	chr7	4119151	4119151	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatcagccctcgctccgccAcccttcagttccggccaggc	8	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	4119151	4119151	A	C	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3259	p.T1087P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	103	1	0.94	117	31	20.67	-	-	-	C	4119151	A	C	4119151	3	2	232	1	0	0	0	0	1	0	0	0	14056	159	6	5	3345	5	SDK1	7	4119151	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	67331	4119151	155019512	1136	16662										
WIPI2	0	genome.wustl.edu	37	chr7	5256252	5256252	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacattcgggacatgaaggTgctgcatacgatcagggaga	13	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	5256252	5256252	T	G	SNP	WIPI2	ENST00000288828	human	ensembl	69_37n	1	known	missense	c.440	p.V147G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954	63	0	0	75	19	20.21	-	-	-	G	5256252	T	G	5256252	3	3	232	1	0	0	0	0	1	0	0	0	17468	1696	59	5	492	5	WIPI2	7	5256252	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1137101	5256252	153882411	1137	16663										
COL28A1	0	genome.wustl.edu	37	chr7	7472284	7472284	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcacaccaggatagccatcAcctttgagtcctggagcacc	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	7472284	7472284	A	C	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	silent	c.1908	p.G636	0.488	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	229	2	0.85	132	34	20.24	-	-	-	C	7472284	A	C	7472284	2	2	232	1	0	0	0	0	0	0	0	1	3716	146	6	5		5	COL28A1	7	7472284	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2216032	7472284	151666379	1138	16664										
GLCCI1	0	genome.wustl.edu	37	chr7	8099741	8099741	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cataggctactggatcaaggTcagttcctatgccactgtca	9	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	8099741	8099741	T	G	SNP	GLCCI1	ENST00000430798	human	ensembl	69_37n	1	putative	splice_site	c.491+2	e5+2	1.000	-	-	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	GLCCI1	HGNC	ENSG00000106415	221	0	0	141	22	13.41	-	-	-	G	8099741	T	G	8099741	5	3	232	1	0	0	0	0	0	0	1	0	6483	1667	58	5	847	5	GLCCI1	7	8099741	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	627457	8099741	151038922	1139	16665										
GLCCI1	0	genome.wustl.edu	37	chr7	8126052	8126052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacgtctctttctgatgacAccagcacagcgggctccatg	9	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	8126052	8126052	A	C	SNP	GLCCI1	ENST00000223145	human	ensembl	69_37n	1	known	missense	c.1528	p.T510P	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	311	3	0.95	281	42	12.96	-	-	-	C	8126052	A	C	8126052	3	2	232	1	0	0	0	0	1	0	0	0	6483	159	6	5	1558	5	GLCCI1	7	8126052	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26311	8126052	151012611	1140	16666										
MACC1	0	genome.wustl.edu	37	chr7	20198913	20198913	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccaaatggtggcagctggTgacggaagagctttagcttg	14	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	20198913	20198913	T	G	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	silent	c.1071	p.S357	0.295	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	123	0	0	68	20	22.47	-	-	-	G	20198913	T	G	20198913	2	3	232	1	0	0	0	0	0	0	0	1	9210	1683	59	5		5	MACC1	7	20198913	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12072861	20198913	138939750	1141	16667										
DNAH11	0	genome.wustl.edu	37	chr7	21631112	21631112	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagacgagaggcagccttcAccttggaggacaagggtgat	14	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	21631112	21631112	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.2584	p.T862P	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	100	0	0	74	13	14.94	-	-	-	C	21631112	A	C	21631112	3	2	232	1	0	0	0	0	1	0	0	0	4635	159	6	5	2638	5	DNAH11	7	21631112	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1432199	21631112	137507551	1142	16668										
DNAH11	0	genome.wustl.edu	37	chr7	21932164	21932164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccggcactgtatggcctccAcccaaatgctgaaatagaat	8	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	21932164	21932164	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.12650	p.H4217P	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	179	0	0	168	30	15.15	-	-	-	C	21932164	A	C	21932164	3	2	232	1	0	0	0	0	1	0	0	0	4635	159	6	5	12957	5	DNAH11	7	21932164	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	301052	21932164	137206499	1143	16669										
KLHL7	0	genome.wustl.edu	37	chr7	23213710	23213710	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccaatgccatggaagggTgtaacagtgaaatgtgcagc	12	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	23213710	23213710	T	G	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	silent	c.1554	p.G518	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	183	1	0.54	145	23	13.61	-	-	-	G	23213710	T	G	23213710	2	3	232	1	0	0	0	0	0	0	0	1	8447	1683	59	5		5	KLHL7	7	23213710	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1281546	23213710	135924953	1144	16670										
GPNMB	0	genome.wustl.edu	37	chr7	23296637	23296637	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggaaaccttttcctcaccAccccggatggagaagatgga	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	23296637	23296637	A	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	missense	c.494	p.H165P	0.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	124	1	0.8	134	23	14.65	-	-	-	C	23296637	A	C	23296637	3	2	232	1	0	0	0	0	1	0	0	0	6670	159	6	5	508	5	GPNMB	7	23296637	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	82927	23296637	135842026	1145	16671										
IGF2BP3	0	genome.wustl.edu	37	chr7	23357301	23357301	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtgataatcaccatcctcActttagcatctggtgcttcc	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	23357301	23357301	A	C	SNP	IGF2BP3	ENST00000258729	human	ensembl	69_37n	-1	known	missense	c.1352	p.V451G	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231	110	0	0	103	19	15.57	-	-	-	C	23357301	A	C	23357301	3	2	232	1	0	0	0	0	1	0	0	0	7629	159	6	5	403	5	IGF2BP3	7	23357301	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	60664	23357301	135781362	1146	16672										
STK31	0	genome.wustl.edu	37	chr7	23826161	23826161	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttgacacagaagccaaggTgattgagagagcagccacct	12	9	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	23826161	23826161	T	G	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.2309	p.V770G	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	123	1	0.81	91	33	26.4	-	-	-	G	23826161	T	G	23826161	3	3	232	1	0	0	0	0	1	0	0	0	15387	1696	59	5	2383	5	STK31	7	23826161	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	468860	23826161	135312502	1147	16673										
DFNA5	0	genome.wustl.edu	37	chr7	24789225	24789225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgagtacatcgccaagggTgagggataaaaactggtact	12	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	24789225	24789225	T	G	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	missense	c.169	p.T57P	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	185	1	0.54	162	29	15.18	-	-	-	G	24789225	T	G	24789225	3	3	232	1	0	0	0	0	1	0	0	0	4490	1696	59	5	1357	5	DFNA5	7	24789225	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	963064	24789225	134349438	1148	16674										
C7orf31	0	genome.wustl.edu	37	chr7	25218861	25218861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caattcattagagtaaaaggTgttggacagtatgtcagctc	10	6	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	25218861	25218861	T	G	SNP	C7orf31	ENST00000283905	human	ensembl	69_37n	-1	known	missense	c.67	p.T23P	0.638	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	133	0	0	54	14	20.29	-	-	-	G	25218861	T	G	25218861	3	3	232	1	0	0	0	0	1	0	0	0	2410	1696	59	5	1741	5	C7orf31	7	25218861	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	429636	25218861	133919802	1149	16675										
NPVF	0	genome.wustl.edu	37	chr7	25266291	25266291	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatttcttggtgctggcaggTcatggagtaaaataagtcat	12	5	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	25266291	25266291	T	G	SNP	NPVF	ENST00000222674	human	ensembl	69_37n	-1	known	missense	c.493	p.T165P	0.072	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	312	1	0.32	267	49	15.46	-	-	-	G	25266291	T	G	25266291	3	3	232	1	0	0	0	0	1	0	0	0	10678	1667	58	5	105	5	NPVF	7	25266291	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	47430	25266291	133872372	1150	16676										
NPVF	0	genome.wustl.edu	37	chr7	25266322	25266322	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aataagtcattggcacatggTgaatgcatggatccttgaca	10	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	25266322	25266322	T	G	SNP	NPVF	ENST00000222674	human	ensembl	69_37n	-1	known	silent	c.462	p.S154	0.002	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	326	0	0	285	32	10.06	-	-	-	G	25266322	T	G	25266322	2	3	232	1	0	0	0	0	0	0	0	1	10678	1683	59	5		5	NPVF	7	25266322	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	31	25266322	133872341	1151	16677										
CREB5	0	genome.wustl.edu	37	chr7	28610009	28610009	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgatgcataatgcagttggTggggccatgacggggcccgg	17	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	28610009	28610009	T	G	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	silent	c.318	p.G106	0.998	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	164	1	0.61	220	32	12.65	-	-	-	G	28610009	T	G	28610009	2	3	232	1	0	0	0	0	0	0	0	1	3890	1683	59	5		5	CREB5	7	28610009	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3343687	28610009	130528654	1152	16678										
CHN2	0	genome.wustl.edu	37	chr7	29519839	29519839	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtagccttcggggtgaaggTgggtgtcaaaggcggctttc	17	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	29519839	29519839	T	G	SNP	CHN2	ENST00000424025	human	ensembl	69_37n	1	known	splice_site	c.111+2	e1+2	1.000	-	-	-	no_errors	CHN2	HGNC	ENSG00000106069	146	0	0	88	23	20.72	-	-	-	G	29519839	T	G	29519839	5	3	232	1	0	0	0	0	0	0	1	0	3392	1696	59	5	715	5	CHN2	7	29519839	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	909830	29519839	129618824	1153	16679										
SCRN1	0	genome.wustl.edu	37	chr7	29983717	29983717	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatcttcaaagtaattcccAccttgtccatgttcttccaa	4	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	29983717	29983717	A	C	SNP	SCRN1	ENST00000434476	human	ensembl	69_37n	-1	known	silent	c.480	p.G160	0.965	pfam_Peptidase_C69	pfam_Peptidase_C69	-	no_errors	SCRN1	HGNC	ENSG00000136193	80	0	0	107	29	21.17	-	-	-	C	29983717	A	C	29983717	2	2	232	1	0	0	0	0	0	0	0	1	14026	146	6	5		5	SCRN1	7	29983717	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	463878	29983717	129154946	1154	16680										
FAM188B	0	genome.wustl.edu	37	chr7	30830832	30830832	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcaccgtcaagcagctccAcccaaccccaagaagagagc	7	18	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	30830832	30830832	A	C	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	missense	c.715	p.T239P	0.000	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	182	0	0	236	28	10.57	-	-	-	C	30830832	A	C	30830832	3	2	232	1	0	0	0	0	1	0	0	0	5556	159	6	5	733	5	FAM188B	7	30830832	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	847115	30830832	128307831	1155	16681										
FAM188B	0	genome.wustl.edu	37	chr7	30830880	30830880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccctgagctctttgtctgcAcccaacaggacattctggct	8	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	30830880	30830880	A	C	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	missense	c.763	p.T255P	0.000	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	156	1	0.64	184	33	15.07	-	-	-	C	30830880	A	C	30830880	3	2	232	1	0	0	0	0	1	0	0	0	5556	159	6	5	781	5	FAM188B	7	30830880	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	48	30830880	128307783	1156	16682										
ADCYAP1R1	0	genome.wustl.edu	37	chr7	31102897	31102897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcatggctggtgtcgtgcAcgtttccctggctgctctcc	12	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	31102897	31102897	A	C	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	1	known	missense	c.17	p.H6P	0.004	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	36	0	0	43	7	14	-	-	-	C	31102897	A	C	31102897	3	2	232	1	0	0	0	0	1	0	0	0	303	159	6	5	19	5	ADCYAP1R1	7	31102897	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	272017	31102897	128035766	1157	16683										
CCDC129	0	genome.wustl.edu	37	chr7	31692330	31692330	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctgccttcactccacccAccttggagaacagcaccagg	9	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	31692330	31692330	A	C	SNP	CCDC129	ENST00000407970	human	ensembl	69_37n	1	known	missense	c.3022	p.T1008P	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	149	1	0.66	140	17	10.76	-	-	-	C	31692330	A	C	31692330	3	2	232	1	0	0	0	0	1	0	0	0	2789	159	6	5	3072	5	CCDC129	7	31692330	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	589433	31692330	127446333	1158	16684										
HERPUD2	0	genome.wustl.edu	37	chr7	35673350	35673350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattagtgaagtaaagaaggTggtgatgaaagaccaagctg	13	3	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	35673350	35673350	T	G	SNP	HERPUD2	ENST00000311350	human	ensembl	69_37n	-1	known	missense	c.1171	p.T391P	1.000	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	HERPUD2	HGNC	ENSG00000122557	134	0	0	140	21	12.96	-	-	-	G	35673350	T	G	35673350	3	3	232	1	0	0	0	0	1	0	0	0	7115	1696	59	5	53	5	HERPUD2	7	35673350	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3981020	35673350	123465313	1159	16685										
AOAH	0	genome.wustl.edu	37	chr7	36634232	36634232	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtcacaatgatcagcaccAcccttgacctggcttccgct	7	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	36634232	36634232	A	C	SNP	AOAH	ENST00000487014	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AOAH	HGNC	ENSG00000136250	18	0	0	7	7	50	-	-	-	C	36634232	A	C	36634232	1	2	232	0	1	0	0	0	0	0	0	0	727	174	6	5		5	AOAH	7	36634232	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	960882	36634232	122504431	1160	16686										
GPR141	0	genome.wustl.edu	37	chr7	37780046	37780046	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttgcgatcctatagtgacAccccacttaatcagcctcta							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	37780046	37780046	A	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	silent	c.51	p.T17	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	428	3	0.7	289	51	15	-	-	-	C	37780046	A	C	37780046	2	2	232	1	0	0	0	0	0	0	0	1	6699	146	6	5		5	GPR141	7	37780046	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1145814	37780046	121358617	1161	16687	176	2								
GPR141	0	genome.wustl.edu	37	chr7	37780051	37780051	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgatcctatagtgacaccccActtaatcagcctctacttca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	37780051	37780051	A	C	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	missense	c.56	p.H19P	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	425	0	0	303	35	10.23	-	-	-	C	37780051	A	C	37780051	3	2	232	1	0	0	0	0	1	0	0	0	6699	159	6	5	58	5	GPR141	7	37780051	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5	37780051	121358612	1162	16688	176	2								
AMPH	0	genome.wustl.edu	37	chr7	38429447	38429447	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggaccaccagcaccacatcAcccctttgtaaggtaagttc	8	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	38429447	38429447	A	C	SNP	AMPH	ENST00000441628	human	ensembl	69_37n	-1	novel	nonstop	c.1585	p.*529G	0.966	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin,prints_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin,prints_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AMPH	HGNC	ENSG00000078053	386	0	0	315	39	11.02	-	-	-	C	38429447	A	C	38429447	4	2	232	1	0	0	0	0	0	0	0	0	588	146	6	5	157	5	AMPH	7	38429447	Nonstop_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	649396	38429447	120709216	1163	16689										
POU6F2	0	genome.wustl.edu	37	chr7	39504101	39504101	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactttgagaagaacacacAcccttctgggcaggaaatga	9	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	39504101	39504101	A	C	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	missense	c.1892	p.H631P	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	111	0	0	95	20	17.39	-	-	-	C	39504101	A	C	39504101	3	2	232	1	0	0	0	0	1	0	0	0	12358	159	6	5	1930	5	POU6F2	7	39504101	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1074654	39504101	119634562	1164	16690										
INHBA	0	genome.wustl.edu	37	chr7	41739809	41739809	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgcttcttgacggcctccAccatctctggctgagagttg	11	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	41739809	41739809	A	C	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	missense	c.164	p.V55G	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	194	0	0	188	25	11.63	-	-	-	C	41739809	A	C	41739809	3	2	232	1	0	0	0	0	1	0	0	0	7795	159	6	5	1124	5	INHBA	7	41739809	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2235708	41739809	117398854	1165	16691										
HECW1	0	genome.wustl.edu	37	chr7	43540893	43540893	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcttctctccccgatgttcAccctgttcttcacctcagaa	5	16	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	43540893	43540893	A	C	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.3603	p.S1201	0.938	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	224	1	0.44	198	30	13.04	-	-	-	C	43540893	A	C	43540893	2	2	232	1	0	0	0	0	0	0	0	1	7093	146	6	5		5	HECW1	7	43540893	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1801084	43540893	115597770	1166	16692										
AEBP1	0	genome.wustl.edu	37	chr7	44153649	44153649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactgagacctacacagaggTggtgacagagtttgggaccg	15	8	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	44153649	44153649	T	G	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.3266	p.V1089G	0.986	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	27	0	0	21	10	31.25	-	-	-	G	44153649	T	G	44153649	3	3	232	1	0	0	0	0	1	0	0	0	349	1696	59	5	3348	5	AEBP1	7	44153649	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	612756	44153649	114985014	1167	16693										
ZMIZ2	0	genome.wustl.edu	37	chr7	44802918	44802918	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccaacggagaggacggggTggagcagacagctatcaagg	17	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	44802918	44802918	T	G	SNP	ZMIZ2	ENST00000309315	human	ensembl	69_37n	1	known	missense	c.1766	p.V589G	1.000	pfscan_Znf_MIZ	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515	47	0	0	26	7	21.21	-	-	-	G	44802918	T	G	44802918	3	3	232	1	0	0	0	0	1	0	0	0	17793	1696	59	5	1812	5	ZMIZ2	7	44802918	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	649269	44802918	114335745	1168	16694										
AUTS2	0	genome.wustl.edu	37	chr7	70246695	70246695	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtctttttggagccatccAccacccccatgacctggcac	7	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	70246695	70246695	A	C	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	missense	c.2099	p.H700P	1.000	prints_AUTS2	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	228	2	0.87	169	34	16.67	-	-	-	C	70246695	A	C	70246695	3	2	232	1	0	0	0	0	1	0	0	0	1229	159	6	5	2302	5	AUTS2	7	70246695	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	25443777	70246695	88891968	1169	16695										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74211429	74211429	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggaagccaatttcagggTgggaaagtgggccagattat	14	6	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	74211429	74211429	T	G	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	missense	c.2422	p.T808P	1.000	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	234	0	0	222	28	11.2	-	-	-	G	74211429	T	G	74211429	3	3	232	1	0	0	0	0	1	0	0	0	6920	1696	59	5	431	5	GTF2IRD2	7	74211429	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3964734	74211429	84927234	1170	16696										
HIP1	0	genome.wustl.edu	37	chr7	75168744	75168744	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcattttctagctctagcAccctaacctgtaagggaaag	7	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	75168744	75168744	A	C	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.2960	p.V987G	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	195	1	0.51	257	62	19.31	-	-	-	C	75168744	A	C	75168744	3	2	232	1	0	0	0	0	1	0	0	0	7165	159	6	5	161	5	HIP1	7	75168744	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	957315	75168744	83969919	1171	16697										
CCL26	0	genome.wustl.edu	37	chr7	75399054	75399054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtaaagaaatgtatttttgcAcccattttttccttggatgg	8	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	75399054	75399054	A	C	SNP	CCL26	ENST00000005180	human	ensembl	69_37n	-1	known	missense	c.242	p.V81G	0.862	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL26	HGNC	ENSG00000006606	35	0	0	44	8	15.38	-	-	-	C	75399054	A	C	75399054	3	2	232	1	0	0	0	0	1	0	0	0	2925	159	6	5	46	5	CCL26	7	75399054	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	230310	75399054	83739609	1172	16698										
ZP3	0	genome.wustl.edu	37	chr7	76062303	76062303	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgcccttcaggaccacggTgttctcagaggagaagctga	13	10	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	76062303	76062303	T	G	SNP	ZP3	ENST00000394857	human	ensembl	69_37n	1	known	missense	c.491	p.V164G	0.007	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP3	HGNC	ENSG00000188372	31	0	0	29	7	19.44	-	-	-	G	76062303	T	G	76062303	3	3	232	1	0	0	0	0	1	0	0	0	18310	1696	59	5	501	5	ZP3	7	76062303	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	663249	76062303	83076360	1173	16699										
ZP3	0	genome.wustl.edu	37	chr7	76062945	76062945	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaatgcctccccttatcacAccatcgtggacttccatggg	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	76062945	76062945	A	C	SNP	ZP3	ENST00000394857	human	ensembl	69_37n	1	known	missense	c.694	p.T232P	0.878	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP3	HGNC	ENSG00000188372	71	0	0	95	21	18.1	-	-	-	C	76062945	A	C	76062945	3	2	232	1	0	0	0	0	1	0	0	0	18310	159	6	5	708	5	ZP3	7	76062945	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	642	76062945	83075718	1174	16700										
PCLO	0	genome.wustl.edu	37	chr7	82580307	82580307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagggacaattaaaagagcActttcatctcccaccacttc	5	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	82580307	82580307	A	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.9597	p.S3199R	0.004	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	114	0	0	66	16	19.28	-	-	-	C	82580307	A	C	82580307	3	2	232	1	0	0	0	0	1	0	0	0	11656	156	6	5	5928	5	PCLO	7	82580307	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6517362	82580307	76558356	1175	16701										
PCLO	0	genome.wustl.edu	37	chr7	82582445	82582445	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaccagatctttggagggTgatcccaagggccaactggt	13	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	82582445	82582445	T	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.7824	p.S2608	0.980	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	247	0	0	175	34	16.19	-	-	-	G	82582445	T	G	82582445	2	3	232	1	0	0	0	0	0	0	0	1	11656	1683	59	5		5	PCLO	7	82582445	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2138	82582445	76556218	1176	16702										
PCLO	0	genome.wustl.edu	37	chr7	82764193	82764193	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctttggggactgttgaggTgtggggacagtttggccagc	19	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	82764193	82764193	T	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.2673	p.T891	0.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	327	1	0.3	242	39	13.88	-	-	-	G	82764193	T	G	82764193	2	3	232	1	0	0	0	0	0	0	0	1	11656	1683	59	5		5	PCLO	7	82764193	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	181748	82764193	76374470	1177	16703										
GRM3	0	genome.wustl.edu	37	chr7	86468741	86468741	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcttcattgccaagccatcAccagtcatctgtgcattgcg	7	13	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	86468741	86468741	A	C	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	silent	c.1911	p.S637	0.017	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	194	1	0.51	162	23	12.37	-	-	-	C	86468741	A	C	86468741	2	2	232	1	0	0	0	0	0	0	0	1	6849	146	6	5		5	GRM3	7	86468741	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3704548	86468741	72669922	1178	16704										
KIAA1324L	0	genome.wustl.edu	37	chr7	86548595	86548595	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtcagaacctccagccccActctggatatgatctccagc	7	15	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	86548595	86548595	A	C	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.1431	p.S477R	1.000	superfamily_Growth_fac_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	210	1	0.47	157	21	11.8	-	-	-	C	86548595	A	C	86548595	3	2	232	1	0	0	0	0	1	0	0	0	8276	156	6	5	1706	5	KIAA1324L	7	86548595	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	79854	86548595	72590068	1179	16705										
CROT	0	genome.wustl.edu	37	chr7	87005251	87005251	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatagcagtccacatgtaacAccagaggattattctgaggt	10	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	87005251	87005251	A	C	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	silent	c.858	p.T286	0.979	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	239	0	0	184	22	10.68	-	-	-	C	87005251	A	C	87005251	2	2	232	1	0	0	0	0	0	0	0	1	3924	146	6	5		5	CROT	7	87005251	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	456656	87005251	72133412	1180	16706										
ABCB4	0	genome.wustl.edu	37	chr7	87037429	87037429	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccacagccactgctgcccAccagggctagtgtctggcct	10	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	87037429	87037429	A	C	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.3203	p.V1068G	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	199	2	1	204	35	14.58	-	-	-	C	87037429	A	C	87037429	3	2	232	1	0	0	0	0	1	0	0	0	43	159	6	5	673	5	ABCB4	7	87037429	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32178	87037429	72101234	1181	16707										
ABCB1	0	genome.wustl.edu	37	chr7	87183121	87183121	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcccctgagaggaccaaggTggtcccataccagaaggcca	11	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	87183121	87183121	T	G	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.955	p.T319P	0.327	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	411	1	0.24	303	35	10.32	-	-	-	G	87183121	T	G	87183121	3	3	232	1	0	0	0	0	1	0	0	0	40	1696	59	5	2967	5	ABCB1	7	87183121	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	145692	87183121	71955542	1182	16708										
SRI	0	genome.wustl.edu	37	chr7	87839422	87839422	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttctttaaattcattgaaAcccattgtgccagacatatc	5	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	87839422	87839422	A	C	SNP	SRI	ENST00000265729	human	ensembl	69_37n	-1	known	silent	c.273	p.G91	0.975	smart_EF_hand_Ca-bd	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SRI	HGNC	ENSG00000075142	179	1	0.56	115	23	16.55	-	-	-	C	87839422	A	C	87839422	2	2	232	1	0	0	0	0	0	0	0	1	15240	30	2	5		5	SRI	7	87839422	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	656301	87839422	71299241	1183	16709										
PEX1	0	genome.wustl.edu	37	chr7	92123668	92123668	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcctaagcagggcagggTcaatcaagtcagggcgacta	14	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	92123668	92123668	T	G	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.2969	p.D990A	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	130	0	0	86	14	14	-	-	-	G	92123668	T	G	92123668	3	3	232	1	0	0	0	0	1	0	0	0	11809	1667	58	5	906	5	PEX1	7	92123668	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4284246	92123668	67014995	1184	16710										
SAMD9L	0	genome.wustl.edu	37	chr7	92760726	92760726	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagttagacgacgcaggaggTctttgacttcattttttttc	9	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	92760726	92760726	T	G	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.4559	p.D1520A	0.002	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	570	3	0.52	403	59	12.74	-	-	-	G	92760726	T	G	92760726	3	3	232	1	0	0	0	0	1	0	0	0	13913	1667	58	5	199	5	SAMD9L	7	92760726	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	637058	92760726	66377937	1185	16711										
CCDC132	0	genome.wustl.edu	37	chr7	92970797	92970797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagaaagaaaggagaaggTgccaagtccacacctcagtc	11	9	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	92970797	92970797	T	G	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	missense	c.2117	p.V706G	0.999	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	184	0	0	138	34	19.65	-	-	-	G	92970797	T	G	92970797	3	3	232	1	0	0	0	0	1	0	0	0	2792	1696	59	5	2249	5	CCDC132	7	92970797	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	210071	92970797	66167866	1186	16712										
PPP1R9A	0	genome.wustl.edu	37	chr7	94750034	94750034	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttttaatagatgaggatggTcttggtataagtattattgg	11	1	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	94750034	94750034	T	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	silent	c.1539	p.G513	0.992	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	259	0	0	222	31	12.25	-	-	-	G	94750034	T	G	94750034	2	3	232	1	0	0	0	0	0	0	0	1	12455	1654	58	5		5	PPP1R9A	7	94750034	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1779237	94750034	64388629	1187	16713										
PON3	0	genome.wustl.edu	37	chr7	94989403	94989403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttggcatacacggtgctcAccctgggcttctcagacaaa	10	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	94989403	94989403	A	C	SNP	PON3	ENST00000265627	human	ensembl	69_37n	-1	known	missense	c.947	p.V316G	1.000	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	116	0	0	100	23	18.7	-	-	-	C	94989403	A	C	94989403	3	2	232	1	0	0	0	0	1	0	0	0	12324	159	6	5	121	5	PON3	7	94989403	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	239369	94989403	64149260	1188	16714										
DYNC1I1	0	genome.wustl.edu	37	chr7	95657609	95657609	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggactccagtgcagcggacAcccttatcagctgctgcaca	10	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	95657609	95657609	A	C	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	silent	c.1143	p.T381	0.217	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	188	1	0.53	121	27	18	-	-	-	C	95657609	A	C	95657609	2	2	232	1	0	0	0	0	0	0	0	1	4877	146	6	5		5	DYNC1I1	7	95657609	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	668206	95657609	63481054	1189	16715										
SLC25A13	0	genome.wustl.edu	37	chr7	95820548	95820548	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaacttgatgggatgtggtAcctccagcagcctcaaataa	9	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	95820548	95820548	A	C	SNP	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	silent	c.627	p.G209	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	173	1	0.57	148	29	16.38	-	-	-	C	95820548	A	C	95820548	2	2	232	1	0	0	0	0	0	0	0	1	14564	378	14	5		5	SLC25A13	7	95820548	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	162939	95820548	63318115	1190	16716										
LMTK2	0	genome.wustl.edu	37	chr7	97822150	97822150	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaacgtaagcacaaagggTgacgatacagatgtcatgct	11	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	97822150	97822150	T	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	silent	c.2373	p.G791	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	157	0	0	103	15	12.71	-	-	-	G	97822150	T	G	97822150	2	3	232	1	0	0	0	0	0	0	0	1	8915	1683	59	5		5	LMTK2	7	97822150	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2001602	97822150	61316513	1191	16717										
TRRAP	0	genome.wustl.edu	37	chr7	98554139	98554139	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaaacgctttaggacggccAccggagccatcagtgcagta	12	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	98554139	98554139	A	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.6193	p.T2065P	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	106	0	0	144	23	13.45	-	-	-	C	98554139	A	C	98554139	3	2	232	1	0	0	0	0	1	0	0	0	16697	159	6	5	6297	5	TRRAP	7	98554139	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	731989	98554139	60584524	1192	16718										
TRRAP	0	genome.wustl.edu	37	chr7	98588155	98588155	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtactgcattggtgtgccAcccatccagtggctggcctg	12	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	98588155	98588155	A	C	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.8813	p.H2938P	0.001	pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	78	0	0	41	15	26.79	-	-	-	C	98588155	A	C	98588155	3	2	232	1	0	0	0	0	1	0	0	0	16697	146	6	5	9836	5	TRRAP	7	98588155	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34016	98588155	60550508	1193	16719										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99103756	99103756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaccttttcatagtgaaggTggaagaagaagactgcacct	11	7	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99103756	99103756	T	G	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	missense	c.89	p.V30G	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	169	0	0	183	24	11.59	-	-	-	G	99103756	T	G	99103756	3	3	232	1	0	0	0	0	1	0	0	0	17786	1696	59	5	91	5	ZKSCAN5	7	99103756	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	515601	99103756	60034907	1194	16720										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99117844	99117844	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgtatccttcatcctggAggaatgggggcatttggacc	14	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99117844	99117844	A	G	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	missense	c.689	p.E230G	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	117	1	0.85	156	23	12.85	-	-	-	G	99117844	A	G	99117844	3	3	232	1	0	0	0	0	1	0	0	0	17786	304	11	5	703	5	ZKSCAN5	7	99117844	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14088	99117844	60020819	1195	16721										
CYP3A7	0	genome.wustl.edu	37	chr7	99308410	99308410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttctgctggacatcagggTgagtggccagttcatatata	11	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99308410	99308410	T	G	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	missense	c.971	p.H324P	0.993	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	123	0	0	89	23	20.35	-	-	-	G	99308410	T	G	99308410	3	3	232	1	0	0	0	0	1	0	0	0	4212	1696	59	5	556	5	CYP3A7	7	99308410	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	190566	99308410	59830253	1196	16722										
CYP3A4	0	genome.wustl.edu	37	chr7	99359742	99359742	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcttggaatcatcaccaccAcccctttgggaatgaacatc	7	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99359742	99359742	A	C	SNP	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	missense	c.1175	p.V392G	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	169	1	0.58	113	29	20.28	-	-	-	C	99359742	A	C	99359742	3	2	232	1	0	0	0	0	1	0	0	0	4209	159	6	5	348	5	CYP3A4	7	99359742	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	51332	99359742	59778921	1197	16723										
CYP3A43	0	genome.wustl.edu	37	chr7	99457558	99457558	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgtatgaactggccactcAccctgatgtccagcagaaac	8	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99457558	99457558	A	C	SNP	CYP3A43	ENST00000222382	human	ensembl	69_37n	1	known	missense	c.971	p.H324P	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP3A43	HGNC	ENSG00000021461	203	0	0	162	24	12.9	-	-	-	C	99457558	A	C	99457558	3	2	232	1	0	0	0	0	1	0	0	0	4210	159	6	5	1009	5	CYP3A43	7	99457558	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	97816	99457558	59681105	1198	16724										
TRIM4	0	genome.wustl.edu	37	chr7	99489881	99489881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacagaagaacaagaaaaggTgtgcaggtgcactccgtcca	12	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99489881	99489881	T	G	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.1408	p.T470P	0.958	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	579	4	0.68	459	58	11.15	-	-	-	G	99489881	T	G	99489881	3	3	232	1	0	0	0	0	1	0	0	0	16610	1696	59	5	98	5	TRIM4	7	99489881	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	32323	99489881	59648782	1199	16725										
TRIM4	0	genome.wustl.edu	37	chr7	99489980	99489980	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagctggctcttgctgggTgggagttccagggaagccta	17	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99489980	99489980	T	G	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.1309	p.T437P	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	701	7	0.98	614	78	11.22	-	-	-	G	99489980	T	G	99489980	3	3	232	1	0	0	0	0	1	0	0	0	16610	1696	59	5	197	5	TRIM4	7	99489980	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	99	99489980	59648683	1200	16726										
TRIM4	0	genome.wustl.edu	37	chr7	99490102	99490102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgacgtcctcccgacacAccccaacagcaacctccaga	5	20	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99490102	99490102	A	C	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.1187	p.V396G	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	847	3	0.35	694	134	16.18	-	-	-	C	99490102	A	C	99490102	3	2	232	1	0	0	0	0	1	0	0	0	16610	159	6	5	319	5	TRIM4	7	99490102	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	122	99490102	59648561	1201	16727										
TRIM4	0	genome.wustl.edu	37	chr7	99506245	99506245	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcctggctcttctcccccAcctctaagatgagcttcttc	7	16	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99506245	99506245	A	C	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.758	p.V253G	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	316	0	0	456	60	11.56	-	-	-	C	99506245	A	C	99506245	3	2	232	1	0	0	0	0	1	0	0	0	16610	159	6	5	760	5	TRIM4	7	99506245	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	16143	99506245	59632418	1202	16728										
MCM7	0	genome.wustl.edu	37	chr7	99691849	99691849	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtccgggcagaagtataggTggcatccttactagcccaag	13	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99691849	99691849	T	G	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	missense	c.1795	p.T599P	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	72	0	0	66	21	24.14	-	-	-	G	99691849	T	G	99691849	3	3	232	1	0	0	0	0	1	0	0	0	9463	1696	59	5	376	5	MCM7	7	99691849	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	185604	99691849	59446814	1203	16729										
TAF6	0	genome.wustl.edu	37	chr7	99707890	99707890	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccagggcgtcttctcgtccAcccagctctgtaaggggaag	12	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99707890	99707890	A	C	SNP	TAF6	ENST00000344095	human	ensembl	69_37n	-1	known	missense	c.1091	p.V364G	1.000	pfam_DUF1546,superfamily_ARM-type_fold	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290	211	1	0.47	223	38	14.45	-	-	-	C	99707890	A	C	99707890	3	2	232	1	0	0	0	0	1	0	0	0	15622	159	6	5	962	5	TAF6	7	99707890	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	16041	99707890	59430773	1204	16730										
C7orf43	0	genome.wustl.edu	37	chr7	99755254	99755254	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctctgcgctgccctgcccAccttgggccttgaaagcgct	11	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99755254	99755254	A	C	SNP	C7orf43	ENST00000316937	human	ensembl	69_37n	-1	known	splice_site	c.637+2	e3+2	1.000	-	-	-	no_errors	C7orf43	HGNC	ENSG00000146826	152	1	0.65	148	30	16.85	-	-	-	C	99755254	A	C	99755254	5	2	232	1	0	0	0	0	0	0	1	0	2416	173	6	5	1139	5	C7orf43	7	99755254	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47364	99755254	59383409	1205	16731										
PILRA	0	genome.wustl.edu	37	chr7	99987655	99987655	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggagactgctgtgggggTggcagtggctgtcactgtgc	18	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	99987655	99987655	T	G	SNP	PILRA	ENST00000198536	human	ensembl	69_37n	1	known	missense	c.599	p.V200G	0.011	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PILRA	HGNC	ENSG00000085514	143	0	0	94	15	13.76	-	-	-	G	99987655	T	G	99987655	3	3	232	1	0	0	0	0	1	0	0	0	11999	1696	59	5	609	5	PILRA	7	99987655	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	232401	99987655	59151008	1206	16732										
LRCH4	0	genome.wustl.edu	37	chr7	100173335	100173335	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcccccatacctcaggcAcccccatttttcgacaggct	7	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100173335	100173335	A	C	SNP	LRCH4	ENST00000310300	human	ensembl	69_37n	-1	known	missense	c.1847	p.V616G	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454	122	1	0.81	82	18	18	-	-	-	C	100173335	A	C	100173335	3	2	232	1	0	0	0	0	1	0	0	0	9001	159	6	5	212	5	LRCH4	7	100173335	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	185680	100173335	58965328	1207	16733										
FBXO24	0	genome.wustl.edu	37	chr7	100193238	100193238	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacaaccaccttggcctggTggatgaatttggccgaatct	10	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100193238	100193238	T	G	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	missense	c.1229	p.V410G	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	55	0	0	62	12	16.22	-	-	-	G	100193238	T	G	100193238	3	3	232	1	0	0	0	0	1	0	0	0	5781	1696	59	5	1302	5	FBXO24	7	100193238	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19903	100193238	58945425	1208	16734										
ZAN	0	genome.wustl.edu	37	chr7	100334213	100334213	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagccagtgggccctctcccAccggctccaccggggccccc	12	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100334213	100334213	A	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.214	p.T72P	0.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	105	0	0	119	32	21.05	-	-	-	C	100334213	A	C	100334213	3	2	232	1	0	0	0	0	1	0	0	0	17610	159	6	5	224	5	ZAN	7	100334213	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	140975	100334213	58804450	1209	16735										
MUC17	0	genome.wustl.edu	37	chr7	100677347	100677347	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggccacttctgcaatcagcAccctttcaacaactcctgtt	5	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100677347	100677347	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.2650	p.T884P	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	489	1	0.2	339	56	14.07	-	-	-	C	100677347	A	C	100677347	3	2	232	1	0	0	0	0	1	0	0	0	10046	159	6	5	2660	5	MUC17	7	100677347	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	343134	100677347	58461316	1210	16736			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100678409	100678409	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggccagttctgaggctagcAccctttcaacatctcccgtt	8	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100678409	100678409	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.3712	p.T1238P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	380	1	0.26	270	39	12.62	-	-	-	C	100678409	A	C	100678409	3	2	232	1	0	0	0	0	1	0	0	0	10046	159	6	5	3722	5	MUC17	7	100678409	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1062	100678409	58460254	1211	16737			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100678795	100678795	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcctgttgacaacagcacAcctgtgaccacttctactga	6	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100678795	100678795	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.4098	p.T1366	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	389	0	0	277	32	10.32	-	-	-	C	100678795	A	C	100678795	2	2	232	1	0	0	0	0	0	0	0	1	10046	146	6	5		5	MUC17	7	100678795	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	386	100678795	58459868	1212	16738			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100679716	100679716	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagtcagttcatctcctacAcctgctgaaggtaccagcat	8	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100679716	100679716	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.5019	p.T1673	0.097	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	339	1	0.29	256	30	10.49	-	-	-	C	100679716	A	C	100679716	2	2	232	1	0	0	0	0	0	0	0	1	10046	146	6	5		5	MUC17	7	100679716	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	921	100679716	58458947	1213	16739			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100681412	100681412	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagttacttctgaggctagcAccctttcagcaactcctgtt	7	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100681412	100681412	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6715	p.T2239P	0.034	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	330	3	0.9	272	37	11.94	-	-	-	C	100681412	A	C	100681412	3	2	232	1	0	0	0	0	1	0	0	0	10046	159	6	5	6725	5	MUC17	7	100681412	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1696	100681412	58457251	1214	16740			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100682693	100682693	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccaggacacttgtgaccActtccactggaaccagttca	7	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100682693	100682693	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.7996	p.T2666P	0.007	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	253	2	0.78	249	32	11.39	-	-	-	C	100682693	A	C	100682693	3	2	232	1	0	0	0	0	1	0	0	0	10046	159	6	5	8006	5	MUC17	7	100682693	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1281	100682693	58455970	1215	16741			9	39		7	7	5868	A		2.707569e-05
MUC17	0	genome.wustl.edu	37	chr7	100683214	100683214	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcctgttgacaccagcacAcctgtgaccacttctactaa	5	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100683214	100683214	A	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.8517	p.T2839	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	269	1	0.37	242	33	11.96	-	-	-	C	100683214	A	C	100683214	2	2	232	1	0	0	0	0	0	0	0	1	10046	146	6	5		5	MUC17	7	100683214	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	521	100683214	58455449	1216	16742			9	39		7	7	5868	A		2.707569e-05
PLOD3	0	genome.wustl.edu	37	chr7	100852180	100852180	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtagtgctccatctctgccAccagctcatcacacatttgt	6	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	100852180	100852180	A	C	SNP	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	missense	c.1742	p.V581G	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	69	0	0	46	8	14.81	-	-	-	C	100852180	A	C	100852180	3	2	232	1	0	0	0	0	1	0	0	0	12177	159	6	5	490	5	PLOD3	7	100852180	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	168966	100852180	58286483	1217	16743										
RELN	0	genome.wustl.edu	37	chr7	103557593	103557593	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagatgtgtatagtcctgtcAccagcaagccgtcaaaaaag	9	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	103557593	103557593	A	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.266	p.V89G	1.000	pfam_Reeler_dom,pfscan_Reeler_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	205	0	0	150	19	11.18	-	-	-	C	103557593	A	C	103557593	3	2	232	1	0	0	0	0	1	0	0	0	13303	159	6	5	10372	5	RELN	7	103557593	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2705413	103557593	55581070	1218	16744										
MLL5	0	genome.wustl.edu	37	chr7	104702667	104702667	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaatccaacagttatccccAccagttatataccagcagct	5	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	104702667	104702667	A	C	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.128	p.H43P	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	305	1	0.33	270	36	11.76	-	-	-	C	104702667	A	C	104702667	3	2	232	1	0	0	0	0	1	0	0	0	9695	159	6	5	134	5	MLL5	7	104702667	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1145074	104702667	54435996	1219	16745										
SRPK2	0	genome.wustl.edu	37	chr7	104782602	104782602	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatccagagaacaacgaggTggaaaactctgggaactgtg	14	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	104782602	104782602	T	G	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	missense	c.1396	p.T466P	0.984	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	310	0	0	283	40	12.35	-	-	-	G	104782602	T	G	104782602	3	3	232	1	0	0	0	0	1	0	0	0	15251	1696	59	5	727	5	SRPK2	7	104782602	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	79935	104782602	54356061	1220	16746										
SRPK2	0	genome.wustl.edu	37	chr7	104783590	104783590	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcctgttgtttttagtttcAcctctgggcagtattcgcca	8	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	104783590	104783590	A	C	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	missense	c.1001	p.V334G	0.991	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	262	1	0.38	230	37	13.86	-	-	-	C	104783590	A	C	104783590	3	2	232	1	0	0	0	0	1	0	0	0	15251	159	6	5	1126	5	SRPK2	7	104783590	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	988	104783590	54355073	1221	16747										
ATXN7L1	0	genome.wustl.edu	37	chr7	105516281	105516281	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttattaagcctcataaccTccctgctttttccaccctct	2	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	105516281	105516281	T	C	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	missense	c.227	p.E76G	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	248	1	0.4	130	24	15.48	-	-	-	C	105516281	T	C	105516281	3	2	232	1	0	0	0	0	1	0	0	0	1220	1551	54	5	2495	5	ATXN7L1	7	105516281	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	732691	105516281	53622382	1222	16748										
CBLL1	0	genome.wustl.edu	37	chr7	107399335	107399335	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catattattgcccagatgccAccttatatgaatcatcctcc	4	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	107399335	107399335	A	C	SNP	CBLL1	ENST00000440859	human	ensembl	69_37n	1	known	silent	c.1188	p.P396	1.000	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879	452	2	0.44	497	65	11.57	-	-	-	C	107399335	A	C	107399335	2	2	232	1	0	0	0	0	0	0	0	1	2728	146	6	5		5	CBLL1	7	107399335	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1883054	107399335	51739328	1223	16749										
CBLL1	0	genome.wustl.edu	37	chr7	107399371	107399371	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctccaggacctcccccAcctcaacatggtggtccacc	6	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	107399371	107399371	A	C	SNP	CBLL1	ENST00000440859	human	ensembl	69_37n	1	known	silent	c.1224	p.P408	0.746	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879	383	1	0.26	364	71	16.25	-	-	-	C	107399371	A	C	107399371	2	2	232	1	0	0	0	0	0	0	0	1	2728	146	6	5		5	CBLL1	7	107399371	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36	107399371	51739292	1224	16750										
CBLL1	0	genome.wustl.edu	37	chr7	107399569	107399569	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtccgccttctcaaaccccActtcctggaccacatcatcc	5	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	107399569	107399569	A	C	SNP	CBLL1	ENST00000440859	human	ensembl	69_37n	1	known	silent	c.1422	p.P474	0.984	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879	205	0	0	228	29	11.24	-	-	-	C	107399569	A	C	107399569	2	2	232	1	0	0	0	0	0	0	0	1	2728	146	6	5		5	CBLL1	7	107399569	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	198	107399569	51739094	1225	16751										
TMEM168	0	genome.wustl.edu	37	chr7	112407761	112407761	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaccattcttttctctccAccattctataagtgtgtcaa	5	11	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	112407761	112407761	A	C	SNP	TMEM168	ENST00000312814	human	ensembl	69_37n	-1	known	missense	c.1585	p.W529G	1.000	NULL	superfamily_ConA-like_lec_gl	-	no_errors	TMEM168	HGNC	ENSG00000146802	184	0	0	127	22	14.67	-	-	-	C	112407761	A	C	112407761	3	2	232	1	0	0	0	0	1	0	0	0	16178	159	6	5	512	5	TMEM168	7	112407761	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5008192	112407761	46730902	1226	16752										
GPR85	0	genome.wustl.edu	37	chr7	112724260	112724260	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggagcggtgttggaaggTgcattgatcttcctccctaa	13	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	112724260	112724260	T	G	SNP	GPR85	ENST00000297146	human	ensembl	69_37n	-1	known	missense	c.517	p.T173P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604	160	1	0.62	76	19	20	-	-	-	G	112724260	T	G	112724260	3	3	232	1	0	0	0	0	1	0	0	0	6765	1696	59	5	599	5	GPR85	7	112724260	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	316499	112724260	46414403	1227	16753										
MET	0	genome.wustl.edu	37	chr7	116380977	116380977	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcaatgcctctctgccccAccctttgttcagtgtggctg	9	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	116380977	116380977	A	C	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	silent	c.1599	p.P533	0.092	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	271	2	0.72	223	51	18.61	-	-	-	C	116380977	A	C	116380977	2	2	232	1	0	0	0	0	0	0	0	1	9556	146	6	5		5	MET	7	116380977	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3656717	116380977	42757686	1228	16754										
KCND2	0	genome.wustl.edu	37	chr7	120382628	120382628	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttgaaacccagcaccaccAcctgcttcactgcctggaaa	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	120382628	120382628	A	C	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.1439	p.H480P	1.000	pfam_K_chnl_volt-dep_Kv4_C,prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	136	1	0.72	117	19	13.87	-	-	-	C	120382628	A	C	120382628	3	2	232	1	0	0	0	0	1	0	0	0	8073	159	6	5	1453	5	KCND2	7	120382628	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4001651	120382628	38756035	1229	16755										
PTPRZ1	0	genome.wustl.edu	37	chr7	121650607	121650607	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaatacatctttaaattccActtcccaaccagtcactaaa	1	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	121650607	121650607	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.1507	p.T503P	0.991	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	309	1	0.32	265	44	14.19	-	-	-	C	121650607	A	C	121650607	3	2	232	1	0	0	0	0	1	0	0	0	12897	159	6	5	1553	5	PTPRZ1	7	121650607	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1267979	121650607	37488056	1230	16756										
PTPRZ1	0	genome.wustl.edu	37	chr7	121652121	121652121	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgatagtgaatttcttttAcctgacacagatgggctgac	9	8	2	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	121652121	121652121	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.3021	p.L1007F	0.883	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	199	2	1	107	33	23.57	-	-	-	C	121652121	A	C	121652121	3	2	232	1	0	0	0	0	1	0	0	0	12897	388	14	5	3067	5	PTPRZ1	7	121652121	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1514	121652121	37486542	1231	16757										
RNF148	0	genome.wustl.edu	37	chr7	122342347	122342347	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttcaggttgcttatcatcAccgcgactatattttccgtc	6	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	122342347	122342347	A	C	SNP	RNF148	ENST00000434824	human	ensembl	69_37n	-1	known	missense	c.458	p.V153G	0.998	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	419	0	0	311	56	15.26	-	-	-	C	122342347	A	C	122342347	3	2	232	1	0	0	0	0	1	0	0	0	13535	159	6	5	463	5	RNF148	7	122342347	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	690226	122342347	36796316	1232	16758										
LMOD2	0	genome.wustl.edu	37	chr7	123302581	123302581	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacatcatgggcagccaggTggaaatggagattgtcaagc	14	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	123302581	123302581	T	G	SNP	LMOD2	ENST00000458573	human	ensembl	69_37n	1	known	missense	c.941	p.V314G	1.000	NULL	pfam_Tropomodulin,pfscan_WH2_dom	-	no_errors	LMOD2	HGNC	ENSG00000170807	254	2	0.78	279	47	14.29	-	-	-	G	123302581	T	G	123302581	3	3	232	1	0	0	0	0	1	0	0	0	8913	1696	59	5	947	5	LMOD2	7	123302581	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	960234	123302581	35836082	1233	16759										
GRM8	0	genome.wustl.edu	37	chr7	126173510	126173510	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcatatgattgtatctggTgctgcaatcattaaaaacgt	9	6	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	126173510	126173510	T	G	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	silent	c.1926	p.A642	0.999	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	119	0	0	114	13	10.24	-	-	-	G	126173510	T	G	126173510	2	3	232	1	0	0	0	0	0	0	0	1	6854	1683	59	5		5	GRM8	7	126173510	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2870929	126173510	32965153	1234	16760										
ZNF800	0	genome.wustl.edu	37	chr7	127014827	127014827	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagggggctctacagtttccAcctctgtatctgtaaccggt	11	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127014827	127014827	A	C	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	missense	c.563	p.V188G	0.939	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	284	0	0	183	28	13.21	-	-	-	C	127014827	A	C	127014827	3	2	232	1	0	0	0	0	1	0	0	0	18262	159	6	5	1439	5	ZNF800	7	127014827	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	841317	127014827	32123836	1235	16761										
PAX4	0	genome.wustl.edu	37	chr7	127255099	127255099	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgccctttggctccaagacAcctgtgcggtagtaacgccc	10	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127255099	127255099	A	C	SNP	PAX4	ENST00000341640	human	ensembl	69_37n	-1	known	silent	c.171	p.G57	0.844	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331	119	0	0	76	17	18.09	-	-	-	C	127255099	A	C	127255099	2	2	232	1	0	0	0	0	0	0	0	1	11554	146	6	5		5	PAX4	7	127255099	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	240272	127255099	31883564	1236	16762										
SND1	0	genome.wustl.edu	37	chr7	127637937	127637937	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgttctggaaggtgcaccAccttttcttggaaggcttcc	10	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127637937	127637937	A	C	SNP	SND1	ENST00000467238	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SND1	HGNC	ENSG00000197157	250	1	0.4	236	34	12.5	-	-	-	C	127637937	A	C	127637937	1	2	232	0	1	0	0	0	0	0	0	0	14933	174	6	5		5	SND1	7	127637937	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	382838	127637937	31500726	1237	16763										
LEP	0	genome.wustl.edu	37	chr7	127894539	127894539	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgaccttatccaagatggAccagacactggcagtctacc	8	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127894539	127894539	A	C	SNP	LEP	ENST00000308868	human	ensembl	69_37n	1	known	missense	c.227	p.D76A	1.000	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	-	no_errors	LEP	HGNC	ENSG00000174697	161	1	0.62	151	26	14.53	-	-	-	C	127894539	A	C	127894539	3	2	232	1	0	0	0	0	1	0	0	0	8781	275	10	5	233	5	LEP	7	127894539	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	256602	127894539	31244124	1238	16764										
RBM28	0	genome.wustl.edu	37	chr7	127954895	127954895	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcagctccacctgctccActtcagccttggtctggaac	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127954895	127954895	A	C	SNP	RBM28	ENST00000223073	human	ensembl	69_37n	-1	known	missense	c.1967	p.V656G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344	342	1	0.29	305	34	10	-	-	-	C	127954895	A	C	127954895	3	2	232	1	0	0	0	0	1	0	0	0	13211	159	6	5	324	5	RBM28	7	127954895	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	60356	127954895	31183768	1239	16765										
RBM28	0	genome.wustl.edu	37	chr7	127964642	127964642	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccagatagagattccgggTgccagtcggcttcttcacct	12	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	127964642	127964642	T	G	SNP	RBM28	ENST00000223073	human	ensembl	69_37n	-1	known	missense	c.1309	p.T437P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344	363	0	0	291	39	11.71	-	-	-	G	127964642	T	G	127964642	3	3	232	1	0	0	0	0	1	0	0	0	13211	1696	59	5	1002	5	RBM28	7	127964642	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9747	127964642	31174021	1240	16766										
SMO	0	genome.wustl.edu	37	chr7	128846152	128846152	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcaagacctcctacttccAcctgctcacctggtcactcc	7	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	128846152	128846152	A	C	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	missense	c.1082	p.H361P	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	123	0	0	85	15	15	-	-	-	C	128846152	A	C	128846152	3	2	232	1	0	0	0	0	1	0	0	0	14889	159	6	5	1100	5	SMO	7	128846152	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	881510	128846152	30292511	1241	16767										
FAM40B	0	genome.wustl.edu	37	chr7	129094332	129094332	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagacagacccctgtgggTggagaacagcccgggagacc	16	11	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	129094332	129094332	T	G	SNP	FAM40B	ENST00000249344	human	ensembl	69_37n	1	known	missense	c.670	p.W224G	1.000	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40B	HGNC	ENSG00000128578	45	0	0	54	16	22.86	-	-	-	G	129094332	T	G	129094332	3	3	232	1	0	0	0	0	1	0	0	0	5607	1696	59	5	696	5	FAM40B	7	129094332	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	248180	129094332	30044331	1242	16768										
NRF1	0	genome.wustl.edu	37	chr7	129330345	129330345	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcagaactgccgcctctcAccatcgacggaattccagtc	7	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	129330345	129330345	A	C	SNP	NRF1	ENST00000393231	human	ensembl	69_37n	1	known	missense	c.565	p.T189P	1.000	pfam_Nrf1_NLS/DNA-bd_dimer	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459	184	1	0.54	193	41	17.52	-	-	-	C	129330345	A	C	129330345	3	2	232	1	0	0	0	0	1	0	0	0	10719	159	6	5	579	5	NRF1	7	129330345	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	236013	129330345	29808318	1243	16769										
CPA1	0	genome.wustl.edu	37	chr7	130027832	130027832	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctgaccatcatggagcacAccctgaatcacccctactga	6	15	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	130027832	130027832	A	C	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.1240	p.T414P	0.975	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	235	0	0	230	40	14.81	-	-	-	C	130027832	A	C	130027832	3	2	232	1	0	0	0	0	1	0	0	0	3819	159	6	5	1278	5	CPA1	7	130027832	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	697487	130027832	29110831	1244	16770										
EXOC4	0	genome.wustl.edu	37	chr7	133002111	133002111	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctcgaaaattccttgatAcctctcactattctactgct	3	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	133002111	133002111	A	C	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.730	p.T244P	0.005	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	297	3	1	207	30	12.61	-	-	-	C	133002111	A	C	133002111	3	2	232	1	0	0	0	0	1	0	0	0	5342	391	14	5	748	5	EXOC4	7	133002111	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2974279	133002111	26136552	1245	16771										
AKR1B1	0	genome.wustl.edu	37	chr7	134136369	134136369	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaagagctcctcacgcttcAccacctgctccctgagcttc	7	17	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	134136369	134136369	A	C	SNP	AKR1B1	ENST00000285930	human	ensembl	69_37n	-1	known	missense	c.203	p.V68G	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662	81	0	0	75	15	16.67	-	-	-	C	134136369	A	C	134136369	3	2	232	1	0	0	0	0	1	0	0	0	466	159	6	5	783	5	AKR1B1	7	134136369	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1134258	134136369	25002294	1246	16772										
AKR1B10	0	genome.wustl.edu	37	chr7	134221418	134221418	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataggccatggaggagctggTggatgaggggctggtgaaag	20	4	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	134221418	134221418	T	G	SNP	AKR1B10	ENST00000359579	human	ensembl	69_37n	1	known	missense	c.446	p.V149G	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074	117	1	0.85	72	20	21.74	-	-	-	G	134221418	T	G	134221418	3	3	232	1	0	0	0	0	1	0	0	0	467	1696	59	5	464	5	AKR1B10	7	134221418	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	85049	134221418	24917245	1247	16773										
SLC13A4	0	genome.wustl.edu	37	chr7	135375976	135375976	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagaagccagagcatagccTcccccaaccagaatgacaat	7	15	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	135375976	135375976	T	C	SNP	SLC13A4	ENST00000354042	human	ensembl	69_37n	-1	known	silent	c.1416	p.G472	0.997	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	96	0	0	98	12	10.91	-	-	-	C	135375976	T	C	135375976	2	2	232	1	0	0	0	0	0	0	0	1	14483	1538	54	5		5	SLC13A4	7	135375976	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1154558	135375976	23762687	1248	16774										
CHRM2	0	genome.wustl.edu	37	chr7	136699831	136699831	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgctgaccttatcataggTgttttctccatgaacttgta	8	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	136699831	136699831	T	G	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	silent	c.219	p.G73	0.978	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	240	0	0	149	23	13.29	-	-	-	G	136699831	T	G	136699831	2	3	232	1	0	0	0	0	0	0	0	1	3406	1683	59	5		5	CHRM2	7	136699831	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1323855	136699831	22438832	1249	16775										
CHRM2	0	genome.wustl.edu	37	chr7	136700171	136700171	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttttccaatgctgctgtcAcctttggtacggctattgca	8	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	136700171	136700171	A	C	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	missense	c.559	p.T187P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	180	0	0	139	20	12.5	-	-	-	C	136700171	A	C	136700171	3	2	232	1	0	0	0	0	1	0	0	0	3406	159	6	5	561	5	CHRM2	7	136700171	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	340	136700171	22438492	1250	16776										
CHRM2	0	genome.wustl.edu	37	chr7	136700843	136700843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtcatggtgctcattaacAccttttgtgcaccttgcatc	7	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	136700843	136700843	A	C	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	missense	c.1231	p.T411P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	287	1	0.34	198	29	12.66	-	-	-	C	136700843	A	C	136700843	3	2	232	1	0	0	0	0	1	0	0	0	3406	159	6	5	1233	5	CHRM2	7	136700843	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	672	136700843	22437820	1251	16777										
UBN2	0	genome.wustl.edu	37	chr7	138968831	138968831	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgcctaagccttctgcctcAcccaagccctctctgtcagc	6	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	138968831	138968831	A	C	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	silent	c.3180	p.S1060	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	236	0	0	310	48	13.3	-	-	-	C	138968831	A	C	138968831	2	2	232	1	0	0	0	0	0	0	0	1	16990	146	6	5		5	UBN2	7	138968831	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2267988	138968831	20169832	1252	16778										
UBN2	0	genome.wustl.edu	37	chr7	138969024	138969024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatcagcagacagtctcccAccttgaatttattgccctct	5	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	138969024	138969024	A	C	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.3373	p.T1125P	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	140	0	0	166	30	15.23	-	-	-	C	138969024	A	C	138969024	3	2	232	1	0	0	0	0	1	0	0	0	16990	159	6	5	3431	5	UBN2	7	138969024	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	193	138969024	20169639	1253	16779										
HIPK2	0	genome.wustl.edu	37	chr7	139416320	139416320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagccgctgtttttggaggTggcagtagacgtggtggcag	19	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	139416320	139416320	T	G	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.514	p.T172P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	184	1	0.54	190	32	14.35	-	-	-	G	139416320	T	G	139416320	3	3	232	1	0	0	0	0	1	0	0	0	7168	1696	59	5	3138	5	HIPK2	7	139416320	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	447296	139416320	19722343	1254	16780										
DENND2A	0	genome.wustl.edu	37	chr7	140287527	140287527	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtctgcgcgtaccagtccAccctgctgctctcagaggaa	10	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	140287527	140287527	A	C	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	missense	c.1049	p.V350G	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	89	0	0	67	23	25.27	-	-	-	C	140287527	A	C	140287527	3	2	232	1	0	0	0	0	1	0	0	0	4465	159	6	5	2048	5	DENND2A	7	140287527	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	871207	140287527	18851136	1255	16781										
DENND2A	0	genome.wustl.edu	37	chr7	140301262	140301262	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctgttcacagaggaaggTgggggagaggagggcagagg	20	5	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	140301262	140301262	T	G	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	silent	c.936	p.P312	0.007	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	94	0	0	152	28	15.56	-	-	-	G	140301262	T	G	140301262	2	3	232	1	0	0	0	0	0	0	0	1	4465	1683	59	5		5	DENND2A	7	140301262	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13735	140301262	18837401	1256	16782										
WEE2	0	genome.wustl.edu	37	chr7	141408695	141408695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaccccagagaagggtgaagTgcaggattcagaggcaaagg	15	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141408695	141408695	T	G	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	1	known	missense	c.137	p.V46G	0.000	pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	348	2	0.57	455	58	11.26	-	-	-	G	141408695	T	G	141408695	3	3	232	1	0	0	0	0	1	0	0	0	17442	1696	59	5	139	5	WEE2	7	141408695	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1107433	141408695	17729968	1257	16783										
WEE2	0	genome.wustl.edu	37	chr7	141423063	141423063	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacaactctagcatggtacAcctggacatcaaacctagtc	6	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141423063	141423063	A	C	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	1	known	missense	c.1010	p.H337P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	330	1	0.3	222	37	14.29	-	-	-	C	141423063	A	C	141423063	3	2	232	1	0	0	0	0	1	0	0	0	17442	159	6	5	1032	5	WEE2	7	141423063	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14368	141423063	17715600	1258	16784										
WEE2	0	genome.wustl.edu	37	chr7	141423076	141423076	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggtacacctggacatcaaAcctagtcagtgtgattccct	8	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141423076	141423076	A	C	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	1	known	missense	c.1023	p.K341N	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	323	1	0.31	238	32	11.81	-	-	-	C	141423076	A	C	141423076	3	2	232	1	0	0	0	0	1	0	0	0	17442	40	2	5	1045	5	WEE2	7	141423076	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	141423076	17715587	1259	16785										
TAS2R3	0	genome.wustl.edu	37	chr7	141464259	141464259	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctgagcatttggcttgccAcctgtcttggtgtcctctac	9	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141464259	141464259	A	C	SNP	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	missense	c.301	p.T101P	0.627	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	573	1	0.17	517	102	16.29	-	-	-	C	141464259	A	C	141464259	3	2	232	1	0	0	0	0	1	0	0	0	15664	159	6	5	303	5	TAS2R3	7	141464259	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	41183	141464259	17674404	1260	16786										
OR9A4	0	genome.wustl.edu	37	chr7	141618866	141618866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtatttcttcctcggccAcctctctgccctggagatcc	7	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141618866	141618866	A	C	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	missense	c.191	p.H64P	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	562	4	0.7	438	71	13.92	-	-	-	C	141618866	A	C	141618866	3	2	232	1	0	0	0	0	1	0	0	0	11322	159	6	5	193	5	OR9A4	7	141618866	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	154607	141618866	17519797	1261	16787										
OR9A4	0	genome.wustl.edu	37	chr7	141619345	141619345	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacgcctacatcatctccAccattctcaagatcccgtca	3	18	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141619345	141619345	A	C	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	missense	c.670	p.T224P	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	384	1	0.26	301	61	16.8	-	-	-	C	141619345	A	C	141619345	3	2	232	1	0	0	0	0	1	0	0	0	11322	159	6	5	672	5	OR9A4	7	141619345	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	479	141619345	17519318	1262	16788										
OR9A4	0	genome.wustl.edu	37	chr7	141619411	141619411	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacttgtgcctcccacttcAcctgtgttgtgattggctac	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141619411	141619411	A	C	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	missense	c.736	p.T246P	0.953	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	300	1	0.33	230	48	17.14	-	-	-	C	141619411	A	C	141619411	3	2	232	1	0	0	0	0	1	0	0	0	11322	159	6	5	738	5	OR9A4	7	141619411	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	66	141619411	17519252	1263	16789										
MGAM	0	genome.wustl.edu	37	chr7	141708489	141708489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgaattaattgcatccctgAccagccgccaacaaaggttt	7	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	141708489	141708489	A	C	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.311	p.D104A	1.000	pfam_P_trefoil,smart_P_trefoil	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	157	0	0	100	27	21.26	-	-	-	C	141708489	A	C	141708489	3	2	232	1	0	0	0	0	1	0	0	0	9612	275	10	5	317	5	MGAM	7	141708489	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	89078	141708489	17430174	1264	16790										
TRPV6	0	genome.wustl.edu	37	chr7	142575693	142575693	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcttacctctctggtgcAccttgcaatcctcatacttg	6	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142575693	142575693	A	C	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	missense	c.215	p.V72G	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	121	0	0	127	19	12.93	-	-	-	C	142575693	A	C	142575693	3	2	232	1	0	0	0	0	1	0	0	0	16696	159	6	5	2018	5	TRPV6	7	142575693	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	867204	142575693	16562970	1265	16791										
C7orf34	0	genome.wustl.edu	37	chr7	142637571	142637571	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttcacaagcactctttccAcctcagcttctgctttagtc	5	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142637571	142637571	A	C	SNP	C7orf34	ENST00000409607	human	ensembl	69_37n	1	known	missense	c.341	p.H114P	0.448	NULL	NULL	-	no_errors	C7orf34	HGNC	ENSG00000165131	183	1	0.54	140	24	14.63	-	-	-	C	142637571	A	C	142637571	3	2	232	1	0	0	0	0	1	0	0	0	2412	159	6	5	347	5	C7orf34	7	142637571	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61878	142637571	16501092	1266	16792										
KEL	0	genome.wustl.edu	37	chr7	142658954	142658954	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcctcactttggtccccAccttcctgaagtgagtggag	9	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142658954	142658954	A	C	SNP	KEL	ENST00000460479	human	ensembl	69_37n	-1	novel	missense	c.40	p.W14G	0.015	NULL	pfam_Peptidase_M13_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KEL	HGNC	ENSG00000197993	357	1	0.28	614	113	15.54	-	-	-	C	142658954	A	C	142658954	3	2	232	1	0	0	0	0	1	0	0	0	8195	146	6	5	2261	5	KEL	7	142658954	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21383	142658954	16479709	1267	16793										
OR6V1	0	genome.wustl.edu	37	chr7	142749602	142749602	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgacacccacctacatacAcccatgtacttcttcctggg	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142749602	142749602	A	C	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	1	known	silent	c.165	p.T55	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	371	0	0	354	41	10.35	-	-	-	C	142749602	A	C	142749602	2	2	232	1	0	0	0	0	0	0	0	1	11284	146	6	5		5	OR6V1	7	142749602	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	90648	142749602	16389061	1268	16794										
OR6V1	0	genome.wustl.edu	37	chr7	142749759	142749759	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacttttccctggggtccAcctccttcctcatcctgaca	5	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142749759	142749759	A	C	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	1	known	missense	c.322	p.T108P	0.049	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	271	1	0.36	234	51	17.71	-	-	-	C	142749759	A	C	142749759	3	2	232	1	0	0	0	0	1	0	0	0	11284	159	6	5	324	5	OR6V1	7	142749759	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	157	142749759	16388904	1269	16795										
OR6V1	0	genome.wustl.edu	37	chr7	142750149	142750149	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgccagaaggctttctccActtgcgggtctcacctcaca	9	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142750149	142750149	A	C	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	1	known	missense	c.712	p.T238P	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	222	1	0.45	183	25	12.02	-	-	-	C	142750149	A	C	142750149	3	2	232	1	0	0	0	0	1	0	0	0	11284	159	6	5	714	5	OR6V1	7	142750149	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	390	142750149	16388514	1270	16796										
TAS2R40	0	genome.wustl.edu	37	chr7	142919916	142919916	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acataggggccatcaaagccAccagctactttctcatcctc	6	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142919916	142919916	A	C	SNP	TAS2R40	ENST00000408947	human	ensembl	69_37n	1	known	missense	c.745	p.T249P	0.008	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R40	HGNC	ENSG00000221937	344	0	0	226	50	17.99	-	-	-	C	142919916	A	C	142919916	3	2	232	1	0	0	0	0	1	0	0	0	15670	159	6	5	747	5	TAS2R40	7	142919916	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	169767	142919916	16218747	1271	16797										
TMEM139	0	genome.wustl.edu	37	chr7	142983954	142983954	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagatttctcttctctccacAccagacctcgttcatttgac	4	14	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142983954	142983954	A	C	SNP	TMEM139	ENST00000471161	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM139	HGNC	ENSG00000178826	119	0	0	73	19	20.65	-	-	-	C	142983954	A	C	142983954	1	2	232	0	1	0	0	0	0	0	0	0	16149	174	6	5		5	TMEM139	7	142983954	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	64038	142983954	16154709	1272	16798										
CASP2	0	genome.wustl.edu	37	chr7	142989528	142989528	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggaggatatgttgctcaccAccctttctgggcttcagcat	10	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	142989528	142989528	A	C	SNP	CASP2	ENST00000310447	human	ensembl	69_37n	1	known	missense	c.361	p.T121P	0.796	superfamily_DEATH-like,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144	126	1	0.78	71	19	21.11	-	-	-	C	142989528	A	C	142989528	3	2	232	1	0	0	0	0	1	0	0	0	2696	159	6	5	371	5	CASP2	7	142989528	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5574	142989528	16149135	1273	16799										
EPHA1	0	genome.wustl.edu	37	chr7	143092493	143092493	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctctcgaaggaagttccAccactggccacctggggatg	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	143092493	143092493	A	C	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.2002	p.W668G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	241	1	0.41	142	31	17.71	-	-	-	C	143092493	A	C	143092493	3	2	232	1	0	0	0	0	1	0	0	0	5202	159	6	5	956	5	EPHA1	7	143092493	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	102965	143092493	16046170	1274	16800										
FAM115C	0	genome.wustl.edu	37	chr7	143417368	143417368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggctgcttccccgttcccAcccctgagatgagaagctac	9	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	143417368	143417368	A	C	SNP	FAM115C	ENST00000441159	human	ensembl	69_37n	1	known	missense	c.1216	p.T406P	0.000	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379	20	0	0	3	7	70	-	-	-	C	143417368	A	C	143417368	3	2	232	1	0	0	0	0	1	0	0	0	5446	159	6	5	1357	5	FAM115C	7	143417368	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	324875	143417368	15721295	1275	16801										
OR2F1	0	genome.wustl.edu	37	chr7	143657253	143657253	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcccatgtatttctttctcAccaacctctcccttgtcgat	3	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	143657253	143657253	A	C	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	missense	c.190	p.T64P	0.947	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	646	3	0.46	449	68	13.13	-	-	-	C	143657253	A	C	143657253	3	2	232	1	0	0	0	0	1	0	0	0	11069	159	6	5	192	5	OR2F1	7	143657253	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	239885	143657253	15481410	1276	16802										
ARHGEF5	0	genome.wustl.edu	37	chr7	144077001	144077001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgcccacaggctggctggAgggcgtgaggctctcagacg	17	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	144077001	144077001	A	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.4646	p.E1549G	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	107	0	0	115	29	19.73	-	-	-	G	144077001	A	G	144077001	3	3	232	1	0	0	0	0	1	0	0	0	911	304	11	5	4700	5	ARHGEF5	7	144077001	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	419748	144077001	15061662	1277	16803										
TPK1	0	genome.wustl.edu	37	chr7	144150700	144150700	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccacagtcacaacaccagAcccgtcgtaggtattggaag	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	144150700	144150700	A	C	SNP	TPK1	ENST00000360057	human	ensembl	69_37n	-1	known	missense	c.670	p.S224A	0.994	pfam_Thiamin_PyroPKinase_B1-bd,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511	224	1	0.44	118	20	14.39	-	-	-	C	144150700	A	C	144150700	3	2	232	1	0	0	0	0	1	0	0	0	16500	275	10	5	65	5	TPK1	7	144150700	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	73699	144150700	14987963	1278	16804										
CNTNAP2	0	genome.wustl.edu	37	chr7	147926766	147926766	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagattcgatacaacctgggTggcacccgagagccatacaa	10	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	147926766	147926766	T	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	silent	c.3276	p.G1092	0.392	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	243	0	0	235	34	12.55	-	-	-	G	147926766	T	G	147926766	2	3	232	1	0	0	0	0	0	0	0	1	3677	1683	59	5		5	CNTNAP2	7	147926766	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3776066	147926766	11211897	1279	16805										
PDIA4	0	genome.wustl.edu	37	chr7	148702370	148702370	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctgagccccaggtccttcAcctccccagcatagtcctct	7	19	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	148702370	148702370	A	C	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.1385	p.V462G	1.000	pirsf_Protein_diS-isomerase_A4,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	93	0	0	53	17	24.29	-	-	-	C	148702370	A	C	148702370	3	2	232	1	0	0	0	0	1	0	0	0	11743	159	6	5	560	5	PDIA4	7	148702370	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	775604	148702370	10436293	1280	16806										
ZNF398	0	genome.wustl.edu	37	chr7	148876043	148876043	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagacatgttgctgacccAccaatgtagccatgctactg	8	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	148876043	148876043	A	C	SNP	ZNF398	ENST00000540950	human	ensembl	69_37n	1	known	missense	c.1094	p.H365P	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024	225	0	0	321	55	14.51	-	-	-	C	148876043	A	C	148876043	3	2	232	1	0	0	0	0	1	0	0	0	17981	159	6	5	1101	5	ZNF398	7	148876043	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	173673	148876043	10262620	1281	16807										
ZNF282	0	genome.wustl.edu	37	chr7	148895475	148895475	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaatgccttttcagttcccAccctttccagatagggcacc	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	148895475	148895475	A	C	SNP	ZNF282	ENST00000262085	human	ensembl	69_37n	1	known	silent	c.216	p.P72	0.947	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265	125	1	0.79	124	23	15.54	-	-	-	C	148895475	A	C	148895475	2	2	232	1	0	0	0	0	0	0	0	1	17915	146	6	5		5	ZNF282	7	148895475	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19432	148895475	10243188	1282	16808										
ZNF746	0	genome.wustl.edu	37	chr7	149191158	149191158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcctccagcttgccccActcctgctcggagaaataca	7	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	149191158	149191158	A	C	SNP	ZNF746	ENST00000458143	human	ensembl	69_37n	-1	known	missense	c.328	p.W110G	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF746	HGNC	ENSG00000181220	203	2	0.98	245	32	11.55	-	-	-	C	149191158	A	C	149191158	3	2	232	1	0	0	0	0	1	0	0	0	18223	159	6	5	1629	5	ZNF746	7	149191158	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	295683	149191158	9947505	1283	16809										
C7orf29	0	genome.wustl.edu	37	chr7	150027893	150027893	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggtctgtgcgtggaccccAccagggtagccaagagctcc	15	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	150027893	150027893	A	C	SNP	C7orf29	ENST00000343855	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	0.000	NULL	NULL	-	no_errors	C7orf29	HGNC	ENSG00000188707	26	0	0	22	9	29.03	-	-	-	C	150027893	A	C	150027893	3	2	232	1	0	0	0	0	1	0	0	0	2408	159	6	5	402	5	C7orf29	7	150027893	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	836735	150027893	9110770	1284	16810										
MLL3	0	genome.wustl.edu	37	chr7	151860755	151860755	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtggcaccatgggaaaggTgggttggctcatggtgggtg	19	6	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151860755	151860755	T	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.9907	p.T3303P	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	132	1	0.75	100	27	21.09	-	-	-	G	151860755	T	G	151860755	3	3	232	1	0	0	0	0	1	0	0	0	9693	1696	59	5	4896	5	MLL3	7	151860755	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1832862	151860755	7277908	1285	16811										
MLL3	0	genome.wustl.edu	37	chr7	151860831	151860831	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acactgggcatcatggtaggTggggccattgcacattgctg	14	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151860831	151860831	T	G	SNP	MLL3	ENST00000360104	human	ensembl	69_37n	-1	novel	missense	c.2347	p.T783P	0.025	NULL	pfam_FYrich_C,pfam_SET_dom,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,pfscan_SET_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLL3	HGNC	ENSG00000055609	141	1	0.7	119	23	16.08	-	-	-	G	151860831	T	G	151860831	3	3	232	1	0	0	0	0	1	0	0	0	9693	1683	59	5	4972	5	MLL3	7	151860831	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	76	151860831	7277832	1286	16812										
MLL3	0	genome.wustl.edu	37	chr7	151879296	151879296	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgagttagaggacccaggTgaaaacacttgcggtgaggg	16	7	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151879296	151879296	T	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.5649	p.S1883	0.999	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	261	1	0.38	196	26	11.56	-	-	-	G	151879296	T	G	151879296	2	3	232	1	0	0	0	0	0	0	0	1	9693	1683	59	5		5	MLL3	7	151879296	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	18465	151879296	7259367	1287	16813			10	40	51196082	5	4	323	N	T_A	4.738686e-06
MLL3	0	genome.wustl.edu	37	chr7	151879377	151879377	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaatccgggatggggctggAggaggaggtggagcttgtgg	23	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151879377	151879377	A	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.5568	p.P1856	0.995	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	302	0	0	242	38	13.48	-	-	-	G	151879377	A	G	151879377	2	3	232	1	0	0	0	0	0	0	0	1	9693	291	11	5		5	MLL3	7	151879377	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	81	151879377	7259286	1288	16814			10	40	51196082	5	4	323	N	T_A	4.738686e-06
MLL3	0	genome.wustl.edu	37	chr7	151879436	151879436	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaagatgtagacgtaggggTactgggtggctgttttgtaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151879436	151879436	T	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.5509	p.T1837P	0.832	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	375	3	0.79	309	51	14.01	-	-	-	G	151879436	T	G	151879436	3	3	232	1	0	0	0	0	1	0	0	0	9693	1638	57	5	9322	5	MLL3	7	151879436	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	59	151879436	7259227	1289	16815	177	2	10	40	51196082	5	4	323	N	T_A	4.738686e-06
MLL3	0	genome.wustl.edu	37	chr7	151879443	151879443	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagacgtaggggtactgggTggctgttttgtaaacagttc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151879443	151879443	T	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.5502	p.P1834	0.011	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	388	1	0.26	349	43	10.94	-	-	-	G	151879443	T	G	151879443	2	3	232	1	0	0	0	0	0	0	0	1	9693	1683	59	5		5	MLL3	7	151879443	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7	151879443	7259220	1290	16816	177	2	10	40	51196082	5	4	323	N	T_A	4.738686e-06
MLL3	0	genome.wustl.edu	37	chr7	151879618	151879618	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctgctgctcatttttcAcctgttcaagtttctgtgtg	9	10	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151879618	151879618	A	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.5327	p.V1776G	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	356	0	0	351	40	10.2	-	-	-	C	151879618	A	C	151879618	3	2	232	1	0	0	0	0	1	0	0	0	9693	159	6	5	9504	5	MLL3	7	151879618	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	175	151879618	7259045	1291	16817			10	40	51196082	5	4	323	N	T_A	4.738686e-06
MLL3	0	genome.wustl.edu	37	chr7	151932929	151932929	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatacaacagctccgattccActtttcagctttgacctgcc	5	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	7	151932929	151932929	A	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.2742	p.S914R	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	476	4	0.83	391	62	13.66	-	-	-	C	151932929	A	C	151932929	3	2	232	1	0	0	0	0	1	0	0	0	9693	156	6	5	12169	5	MLL3	7	151932929	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	53311	151932929	7205734	1292	16818										
CSMD1	0	genome.wustl.edu	37	chr8	3165333	3165333	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggctgcatggatctgaccAccacattccgctgtagaaga	11	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	3165333	3165333	A	C	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.2275	p.W759G	0.450	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	225	0	0	193	35	15.28	-	-	-	C	3165333	A	C	3165333	3	2	232	1	0	0	0	0	1	0	0	0	3976	146	6	5	7044	5	CSMD1	8	3165333	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		3165333	143198689	1293	16819										
TNKS	0	genome.wustl.edu	37	chr8	9590797	9590797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttttgtttagtggcttggTgccccttcataatgcctgtt	9	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	9590797	9590797	T	G	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	missense	c.2156	p.V719G	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	110	0	0	72	21	22.34	-	-	-	G	9590797	T	G	9590797	3	3	232	1	0	0	0	0	1	0	0	0	16414	1696	59	5	2214	5	TNKS	8	9590797	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6425464	9590797	136773225	1294	16820										
RP1L1	0	genome.wustl.edu	37	chr8	10465893	10465893	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgcctccggggcttctgcAccttctgactctggctggac	11	15	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	10465893	10465893	A	C	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	silent	c.5715	p.G1905	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	425	4	0.92	283	59	17.1	-	-	-	C	10465893	A	C	10465893	2	2	232	1	0	0	0	0	0	0	0	1	13619	146	6	5		5	RP1L1	8	10465893	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	875096	10465893	135898129	1295	16821										
RP1L1	0	genome.wustl.edu	37	chr8	10466145	10466145	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcctggatcttggtcaccTcctgccgcagcttcaccctg	9	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	10466145	10466145	T	C	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	silent	c.5463	p.G1821	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	370	2	0.54	260	50	16.13	-	-	-	C	10466145	T	C	10466145	2	2	232	1	0	0	0	0	0	0	0	1	13619	1538	54	5		5	RP1L1	8	10466145	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	252	10466145	135897877	1296	16822										
RP1L1	0	genome.wustl.edu	37	chr8	10466253	10466253	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctcagcttcccccaactcActgcccgcactggtttcact	6	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	10466253	10466253	A	C	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.5355	p.S1785R	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	299	1	0.33	190	28	12.79	-	-	-	C	10466253	A	C	10466253	3	2	232	1	0	0	0	0	1	0	0	0	13619	156	6	5	1851	5	RP1L1	8	10466253	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	108	10466253	135897769	1297	16823										
C8orf74	0	genome.wustl.edu	37	chr8	10555289	10555289	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcgacctgaccgttgcccAcctggaggtgtgcatgccac	13	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	10555289	10555289	A	C	SNP	C8orf74	ENST00000304519	human	ensembl	69_37n	1	known	missense	c.422	p.H141P	0.000	NULL	NULL	-	no_errors	C8orf74	HGNC	ENSG00000171060	126	1	0.79	109	23	17.16	-	-	-	C	10555289	A	C	10555289	3	2	232	1	0	0	0	0	1	0	0	0	2461	159	6	5	432	5	C8orf74	8	10555289	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	89036	10555289	135808733	1298	16824										
SOX7	0	genome.wustl.edu	37	chr8	10692268	10692268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttctgaggatccacagcccActtctgcttccgccgacctg	9	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	10692268	10692268	A	C	SNP	SOX7	ENST00000553390	human	ensembl	69_37n	-1	known	missense	c.37	p.W13G	1.000	NULL	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_superfamily	-	no_errors	SOX7	HGNC	ENSG00000171056	141	0	0	157	25	13.74	-	-	-	C	10692268	A	C	10692268	3	2	232	1	0	0	0	0	1	0	0	0	15045	159	6	5		5	SOX7	8	10692268	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	136979	10692268	135671754	1299	16825										
MTMR9	0	genome.wustl.edu	37	chr8	11162409	11162409	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtctgtccctcttacccAccaattgtcacagtgcccaa	6	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	11162409	11162409	A	C	SNP	MTMR9	ENST00000221086	human	ensembl	69_37n	1	known	silent	c.477	p.P159	0.828	pfam_Myotub-related	pfam_Myotub-related	-	no_errors	MTMR9	HGNC	ENSG00000104643	279	0	0	313	42	11.76	-	-	-	C	11162409	A	C	11162409	2	2	232	1	0	0	0	0	0	0	0	1	10022	146	6	5		5	MTMR9	8	11162409	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	470141	11162409	135201613	1300	16826										
MTMR7	0	genome.wustl.edu	37	chr8	17169078	17169078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggcttgccaccgagcacAcctgagcggtcctgtcccag	12	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	17169078	17169078	A	C	SNP	MTMR7	ENST00000180173	human	ensembl	69_37n	-1	known	missense	c.1043	p.V348G	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	pfam_Myotub-related,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987	413	2	0.48	351	45	11.34	-	-	-	C	17169078	A	C	17169078	3	2	232	1	0	0	0	0	1	0	0	0	10020	159	6	5	963	5	MTMR7	8	17169078	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6006669	17169078	129194944	1301	16827										
PSD3	0	genome.wustl.edu	37	chr8	18541399	18541399	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacggaacctgaggtcctcAcccgtaccttgctggcactc	9	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	18541399	18541399	A	C	SNP	PSD3	ENST00000428502	human	ensembl	69_37n	-1	novel	missense	c.44	p.V15G	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology	-	no_errors	PSD3	HGNC	ENSG00000156011	347	0	0	312	65	17.2	-	-	-	C	18541399	A	C	18541399	3	2	232	1	0	0	0	0	1	0	0	0	12728	174	6	5		5	PSD3	8	18541399	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1372321	18541399	127822623	1302	16828										
PSD3	0	genome.wustl.edu	37	chr8	18729487	18729487	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgaaattccacatgtttgAcccggcctgggcgtcccatg	10	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	18729487	18729487	A	C	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	missense	c.887	p.V296G	0.100	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	243	1	0.41	193	37	16.02	-	-	-	C	18729487	A	C	18729487	3	2	232	1	0	0	0	0	1	0	0	0	12728	275	10	5	2348	5	PSD3	8	18729487	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	188088	18729487	127634535	1303	16829										
PSD3	0	genome.wustl.edu	37	chr8	18730167	18730167	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagcccttaggccttctccAccttcctccatggtcccata	6	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	18730167	18730167	A	C	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	silent	c.207	p.G69	0.903	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	123	0	0	79	17	17.71	-	-	-	C	18730167	A	C	18730167	2	2	232	1	0	0	0	0	0	0	0	1	12728	146	6	5		5	PSD3	8	18730167	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	680	18730167	127633855	1304	16830										
SH2D4A	0	genome.wustl.edu	37	chr8	19221743	19221743	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagaaagacctccccttccAcccaagcctcagttcctaaa	4	18	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	19221743	19221743	A	C	SNP	SH2D4A	ENST00000265807	human	ensembl	69_37n	1	known	silent	c.867	p.P289	0.827	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D4A	HGNC	ENSG00000104611	101	1	0.98	85	22	20.37	-	-	-	C	19221743	A	C	19221743	2	2	232	1	0	0	0	0	0	0	0	1	14323	146	6	5		5	SH2D4A	8	19221743	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	491576	19221743	127142279	1305	16831										
CSGALNACT1	0	genome.wustl.edu	37	chr8	19263579	19263579	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgatgtccagatcaaacccAcctgtcgggacagaacacac	8	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	19263579	19263579	A	C	SNP	CSGALNACT1	ENST00000311540	human	ensembl	69_37n	-1	known	silent	c.1311	p.G437	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408	118	0	0	125	20	13.79	-	-	-	C	19263579	A	C	19263579	2	2	232	1	0	0	0	0	0	0	0	1	3970	173	6	5		5	CSGALNACT1	8	19263579	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	41836	19263579	127100443	1306	16832										
SLC18A1	0	genome.wustl.edu	37	chr8	20036882	20036882	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgaagaaggagaagatggTggaaaaggcaggagaggcga	19	2	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	20036882	20036882	T	G	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	missense	c.238	p.T80P	0.112	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	145	0	0	122	19	13.48	-	-	-	G	20036882	T	G	20036882	3	3	232	1	0	0	0	0	1	0	0	0	14514	1696	59	5	1395	5	SLC18A1	8	20036882	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	773303	20036882	126327140	1307	16833										
BMP1	0	genome.wustl.edu	37	chr8	22037984	22037984	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtggcgcatctctgtcacAcccggggagaaggtacgtgt	15	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	22037984	22037984	A	C	SNP	BMP1	ENST00000306385	human	ensembl	69_37n	1	known	silent	c.1065	p.T355	0.111	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	111	1	0.89	62	22	25.58	-	-	-	C	22037984	A	C	22037984	2	2	232	1	0	0	0	0	0	0	0	1	1461	146	6	5		5	BMP1	8	22037984	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2001102	22037984	124326038	1308	16834										
BMP1	0	genome.wustl.edu	37	chr8	22054300	22054300	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggcagctggtggcccccAcccagtaccgcatctccctg	10	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	22054300	22054300	A	C	SNP	BMP1	ENST00000306385	human	ensembl	69_37n	1	known	missense	c.1873	p.T625P	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	47	0	0	35	15	29.41	-	-	-	C	22054300	A	C	22054300	3	2	232	1	0	0	0	0	1	0	0	0	1461	159	6	5	1927	5	BMP1	8	22054300	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	16316	22054300	124309722	1309	16835										
RHOBTB2	0	genome.wustl.edu	37	chr8	22863544	22863544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgtcaagaccatgtggtAcccagaaatcaagcacttct	7	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	22863544	22863544	A	C	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	missense	c.368	p.Y123S	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	298	3	0.99	216	26	10.74	-	-	-	C	22863544	A	C	22863544	3	2	232	1	0	0	0	0	1	0	0	0	13418	391	14	5	463	5	RHOBTB2	8	22863544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	809244	22863544	123500478	1310	16836										
RHOBTB2	0	genome.wustl.edu	37	chr8	22868052	22868052	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcactccttccctccccaggTggtgtttccctacacaagca	6	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	22868052	22868052	T	G	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	missense	c.1622	p.V541G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	160	0	0	143	28	16.09	-	-	-	G	22868052	T	G	22868052	3	3	232	1	0	0	0	0	1	0	0	0	13418	1710	59	5	1729	5	RHOBTB2	8	22868052	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4508	22868052	123495970	1311	16837										
ADAM28	0	genome.wustl.edu	37	chr8	24199144	24199144	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggaagttgttctgtcaaggTgggtcggataatttgccctg	15	6	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	24199144	24199144	T	G	SNP	ADAM28	ENST00000521629	human	ensembl	69_37n	1	novel	missense	c.601	p.W201G	0.994	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,prints_Blood-coag_inhib_Disintegrin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAM28	HGNC	ENSG00000042980	410	0	0	238	27	10.19	-	-	-	G	24199144	T	G	24199144	3	3	232	1	0	0	0	0	1	0	0	0	246	1683	59	5	1822	5	ADAM28	8	24199144	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1331092	24199144	122164878	1312	16838										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24242054	24242054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagctacctgcagtggccAccatgtcttgggtcctgctg	11	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	24242054	24242054	A	C	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	missense	c.37	p.T13P	0.848	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	60	0	0	64	12	15.79	-	-	-	C	24242054	A	C	24242054	3	2	232	1	0	0	0	0	1	0	0	0	254	159	6	5	39	5	ADAMDEC1	8	24242054	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42910	24242054	122121968	1313	16839										
NEFM	0	genome.wustl.edu	37	chr8	24775741	24775741	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggaagggagtgataaaggTgccaagggatccaggaagga	18	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	24775741	24775741	T	G	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	silent	c.2373	p.G791	0.000	NULL	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	76	0	0	55	25	31.25	-	-	-	G	24775741	T	G	24775741	2	3	232	1	0	0	0	0	0	0	0	1	10388	1683	59	5		5	NEFM	8	24775741	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	533687	24775741	121588281	1314	16840										
ADRA1A	0	genome.wustl.edu	37	chr8	26627985	26627985	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacggcctggctgggcgggTgcagggtgtagcccagggca	19	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	26627985	26627985	T	G	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	missense	c.1082	p.H361P	0.991	prints_Adrene_rcpt_A1Cs	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	375	1	0.27	265	49	15.61	-	-	-	G	26627985	T	G	26627985	3	3	232	1	0	0	0	0	1	0	0	0	334	1696	59	5	613	5	ADRA1A	8	26627985	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1852244	26627985	119736037	1315	16841										
CLU	0	genome.wustl.edu	37	chr8	27456103	27456103	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcaaagagcttcacgaccAcctcagtgacaccggaagga	10	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	27456103	27456103	A	C	SNP	CLU	ENST00000560366	human	ensembl	69_37n	-1	known	missense	c.1370	p.V457G	1.000	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLU	HGNC	ENSG00000120885	104	1	0.95	106	26	19.55	-	-	-	C	27456103	A	C	27456103	3	2	232	1	0	0	0	0	1	0	0	0	3598	159	6	5	143	5	CLU	8	27456103	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	828118	27456103	118907919	1316	16842										
SCARA5	0	genome.wustl.edu	37	chr8	27737282	27737282	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcatcggggcctccacgccAcctgccggagcagccaactg	11	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	27737282	27737282	A	C	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	missense	c.1155	p.S385R	0.992	NULL	pfam_Srcr_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SCARA5	HGNC	ENSG00000168079	38	0	0	47	21	30.43	-	-	-	C	27737282	A	C	27737282	3	2	232	1	0	0	0	0	1	0	0	0	13967	173	6	5	340	5	SCARA5	8	27737282	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	281179	27737282	118626740	1317	16843										
INTS9	0	genome.wustl.edu	37	chr8	28671028	28671028	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caattttctgagaatatcccAccagctggattttactaagg	7	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	28671028	28671028	A	C	SNP	INTS9	ENST00000521022	human	ensembl	69_37n	-1	known	missense	c.590	p.V197G	1.000	NULL	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299	325	2	0.61	365	55	12.97	-	-	-	C	28671028	A	C	28671028	3	2	232	1	0	0	0	0	1	0	0	0	7839	159	6	5	1430	5	INTS9	8	28671028	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	933746	28671028	117692994	1318	16844										
RNF122	0	genome.wustl.edu	37	chr8	33408602	33408602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcatcacctttaagcaccAcctgaaaagaaagaggaggc	10	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	33408602	33408602	A	C	SNP	RNF122	ENST00000256257	human	ensembl	69_37n	-1	known	missense	c.230	p.V77G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF122	HGNC	ENSG00000133874	201	0	0	207	30	12.55	-	-	-	C	33408602	A	C	33408602	3	2	232	1	0	0	0	0	1	0	0	0	13518	173	6	5	249	5	RNF122	8	33408602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4737574	33408602	112955420	1319	16845										
UNC5D	0	genome.wustl.edu	37	chr8	35579811	35579811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtcctggtcattggtgtcAccctttacagacggagccag	11	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	35579811	35579811	A	C	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1201	p.T401P	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	223	1	0.45	154	34	18.09	-	-	-	C	35579811	A	C	35579811	3	2	232	1	0	0	0	0	1	0	0	0	17092	159	6	5	1235	5	UNC5D	8	35579811	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2171209	35579811	110784211	1320	16846										
DDHD2	0	genome.wustl.edu	37	chr8	38103351	38103351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcttctacaatagtcccAcctactgtcagactattgtg	5	12	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	38103351	38103351	A	C	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	1	known	missense	c.940	p.T314P	1.000	NULL	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	161	0	0	156	25	13.81	-	-	-	C	38103351	A	C	38103351	3	2	232	1	0	0	0	0	1	0	0	0	4358	159	6	5	1028	5	DDHD2	8	38103351	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2523540	38103351	108260671	1321	16847										
FGFR1	0	genome.wustl.edu	37	chr8	38271806	38271806	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggagcaccccgaaagaccAcctgcaaatgggcggagagc	13	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	38271806	38271806	A	C	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	missense	c.2143	p.W715G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	41	0	0	39	10	20.41	-	-	-	C	38271806	A	C	38271806	3	2	232	1	0	0	0	0	1	0	0	0	5909	173	6	5	430	5	FGFR1	8	38271806	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	168455	38271806	108092216	1322	16848										
PLEKHA2	0	genome.wustl.edu	37	chr8	38808379	38808379	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccccaggttcccaaaggTgggggcctacccatgaccac	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	38808379	38808379	T	G	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	silent	c.357	p.G119	0.149	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	40	0	0	41	9	17.65	-	-	-	G	38808379	T	G	38808379	2	3	232	1	0	0	0	0	0	0	0	1	12130	1683	59	5		5	PLEKHA2	8	38808379	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	536573	38808379	107555643	1323	16849										
PLAT	0	genome.wustl.edu	37	chr8	42046508	42046508	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttgcaccagcaatattccAcccggttgcttctgagcaca	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	42046508	42046508	A	C	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.197	p.V66G	0.448	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	230	1	0.43	190	53	21.72	-	-	-	C	42046508	A	C	42046508	3	2	232	1	0	0	0	0	1	0	0	0	12095	159	6	5	1535	5	PLAT	8	42046508	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3238129	42046508	104317514	1324	16850										
PRKDC	0	genome.wustl.edu	37	chr8	48746906	48746906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgagggactggtgtggtcgAccagcgggtcagtgctgctc	17	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	48746906	48746906	A	C	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.8000	p.V2667G	0.025	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	130	1	0.76	60	22	26.83	-	-	-	C	48746906	A	C	48746906	3	2	232	1	0	0	0	0	1	0	0	0	12602	275	10	5	4495	5	PRKDC	8	48746906	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6700398	48746906	97617116	1325	16851										
PENK	0	genome.wustl.edu	37	chr8	57353947	57353947	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgcttcaggaaacctccatAccgtttctggtagtccatcc	8	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	57353947	57353947	A	C	SNP	PENK	ENST00000314922	human	ensembl	69_37n	-1	known	missense	c.688	p.Y230D	0.955	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A,prints_Opioid_neupept	-	no_errors	PENK	HGNC	ENSG00000181195	141	0	0	113	14	11.02	-	-	-	C	57353947	A	C	57353947	3	2	232	1	0	0	0	0	1	0	0	0	11800	391	14	5	119	5	PENK	8	57353947	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8607041	57353947	89010075	1326	16852										
CHD7	0	genome.wustl.edu	37	chr8	61655094	61655094	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgcaccagcagcccatccAccccagtggctcacttaacc	6	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	61655094	61655094	A	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.1103	p.H368P	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	192	1	0.52	133	26	16.35	-	-	-	C	61655094	A	C	61655094	3	2	232	1	0	0	0	0	1	0	0	0	3359	159	6	5	1105	5	CHD7	8	61655094	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4301147	61655094	84708928	1327	16853										
CHD7	0	genome.wustl.edu	37	chr8	61769134	61769134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcttcgagagtctcaggTggtctcagaaaatggacaag	12	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	61769134	61769134	T	G	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.7295	p.V2432G	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	118	0	0	82	21	20.39	-	-	-	G	61769134	T	G	61769134	3	3	232	1	0	0	0	0	1	0	0	0	3359	1696	59	5	7425	5	CHD7	8	61769134	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	114040	61769134	84594888	1328	16854										
DNAJC5B	0	genome.wustl.edu	37	chr8	66989076	66989076	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggagacgaaaacgttaacAcctacttcatgctgtcgagc	9	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	66989076	66989076	A	C	SNP	DNAJC5B	ENST00000276570	human	ensembl	69_37n	1	known	missense	c.301	p.T101P	0.994	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5B	HGNC	ENSG00000147570	216	0	0	169	35	16.99	-	-	-	C	66989076	A	C	66989076	3	2	232	1	0	0	0	0	1	0	0	0	4686	159	6	5	307	5	DNAJC5B	8	66989076	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5219942	66989076	79374946	1329	16855										
C8orf44	0	genome.wustl.edu	37	chr8	67590111	67590111	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggccaaggcaggcagatcAcctgaggtcaggagttcgaa	15	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	67590111	67590111	A	C	SNP	C8orf44	ENST00000390159	human	ensembl	69_37n	1	known	silent	c.168	p.S56	0.001	NULL	NULL	-	no_errors	C8orf44	HGNC	ENSG00000213865	47	0	0	38	17	30.91	-	-	-	C	67590111	A	C	67590111	2	2	232	1	0	0	0	0	0	0	0	1	2453	146	6	5		5	C8orf44	8	67590111	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	601035	67590111	78773911	1330	16856										
CPA6	0	genome.wustl.edu	37	chr8	68430281	68430281	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgggctgccacaggtccAcctgtagtgcaggaaccaac	12	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	68430281	68430281	A	C	SNP	CPA6	ENST00000297770	human	ensembl	69_37n	-1	known	missense	c.194	p.V65G	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078	107	0	0	98	19	16.24	-	-	-	C	68430281	A	C	68430281	3	2	232	1	0	0	0	0	1	0	0	0	3824	173	6	5	1155	5	CPA6	8	68430281	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	840170	68430281	77933741	1331	16857										
EYA1	0	genome.wustl.edu	37	chr8	72229893	72229893	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactgagactgtgacaatccAccttcagtcttgatgcctgc	9	12	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	72229893	72229893	A	C	SNP	EYA1	ENST00000465115	human	ensembl	69_37n	-1	known	missense	c.368	p.V123G	0.999	NULL	NULL	-	no_errors	EYA1	HGNC	ENSG00000104313	340	0	0	220	29	11.65	-	-	-	C	72229893	A	C	72229893	3	2	232	1	0	0	0	0	1	0	0	0	5365	146	6	5	1376	5	EYA1	8	72229893	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3799612	72229893	74134129	1332	16858										
CRISPLD1	0	genome.wustl.edu	37	chr8	75929616	75929616	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacaatgatggtggctgggTagatatcactagacaaggaa	13	5	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	75929616	75929616	T	G	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	missense	c.1058	p.V353G	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	125	0	0	73	16	17.98	-	-	-	G	75929616	T	G	75929616	3	3	232	1	0	0	0	0	1	0	0	0	3912	1638	57	5	1092	5	CRISPLD1	8	75929616	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3699723	75929616	70434406	1333	16859										
ZFHX4	0	genome.wustl.edu	37	chr8	77776631	77776631	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacctcaagtttgtgcagcAcctcaggggttcaaacctca	8	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	77776631	77776631	A	C	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.10681	p.T3561P	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	134	1	0.74	135	28	17.18	-	-	-	C	77776631	A	C	77776631	3	2	232	1	0	0	0	0	1	0	0	0	17731	159	6	5	10719	5	ZFHX4	8	77776631	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1847015	77776631	68587391	1334	16860										
FAM82B	0	genome.wustl.edu	37	chr8	87517285	87517285	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggctgctaaggagaccaccAccaatgtctaagtcatgcct	9	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	87517285	87517285	A	C	SNP	FAM82B	ENST00000518772	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.772	-	-	-	no_errors	FAM82B	HGNC	ENSG00000176623	122	0	0	96	24	19.83	-	-	-	C	87517285	A	C	87517285	1	2	232	0	1	0	0	0	0	0	0	0	5677	174	6	5		5	FAM82B	8	87517285	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9740654	87517285	58846737	1335	16861										
RBM12B	0	genome.wustl.edu	37	chr8	94746032	94746032	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcgggctcctaaaatcctcAccaggaggtctaaaattgtc	10	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	94746032	94746032	A	C	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	silent	c.2607	p.G869	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	293	0	0	226	30	11.67	-	-	-	C	94746032	A	C	94746032	2	2	232	1	0	0	0	0	0	0	0	1	13197	146	6	5		5	RBM12B	8	94746032	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7228747	94746032	51617990	1336	16862										
RBM12B	0	genome.wustl.edu	37	chr8	94746437	94746437	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccggaaatgctctgggggTggccgacggaaatgctcctg	15	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	94746437	94746437	T	G	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	silent	c.2202	p.P734	0.009	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	129	0	0	117	22	15.6	-	-	-	G	94746437	T	G	94746437	2	3	232	1	0	0	0	0	0	0	0	1	13197	1683	59	5		5	RBM12B	8	94746437	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	405	94746437	51617585	1337	16863										
RBM12B	0	genome.wustl.edu	37	chr8	94746461	94746461	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacggaaatgctcctgaggTggcctccggaaatgctcctg	13	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	94746461	94746461	T	G	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	silent	c.2178	p.P726	0.868	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	155	0	0	132	29	17.9	-	-	-	G	94746461	T	G	94746461	2	3	232	1	0	0	0	0	0	0	0	1	13197	1683	59	5		5	RBM12B	8	94746461	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	24	94746461	51617561	1338	16864										
TSPYL5	0	genome.wustl.edu	37	chr8	98289111	98289111	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggagtagaacgagacaccAcctggccagaaggaccacac	11	12	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	98289111	98289111	A	C	SNP	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	missense	c.962	p.V321G	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	159	1	0.62	138	23	14.29	-	-	-	C	98289111	A	C	98289111	3	2	232	1	0	0	0	0	1	0	0	0	16758	159	6	5	295	5	TSPYL5	8	98289111	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3542650	98289111	48074911	1339	16865										
VPS13B	0	genome.wustl.edu	37	chr8	100711900	100711900	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccatgtccaacaccatggTgaataaggatgatcttccag	9	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	100711900	100711900	T	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.6269	p.V2090G	0.200	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	196	0	0	164	20	10.87	-	-	-	G	100711900	T	G	100711900	3	3	232	1	0	0	0	0	1	0	0	0	17287	1696	59	5	6601	5	VPS13B	8	100711900	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2422789	100711900	45652122	1340	16866										
VPS13B	0	genome.wustl.edu	37	chr8	100830715	100830715	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttccattatttatgtctggTgcacagttttgactttagaa	8	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	100830715	100830715	T	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.8473	p.C2825G	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	149	1	0.66	102	18	14.88	-	-	-	G	100830715	T	G	100830715	3	3	232	1	0	0	0	0	1	0	0	0	17287	1696	59	5	8845	5	VPS13B	8	100830715	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	118815	100830715	45533307	1341	16867										
RNF19A	0	genome.wustl.edu	37	chr8	101273925	101273925	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaaactgccagtcagcccAccaacacttccctcccctat	3	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	101273925	101273925	A	C	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	silent	c.1527	p.G509	0.988	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	148	0	0	123	17	12.14	-	-	-	C	101273925	A	C	101273925	2	2	232	1	0	0	0	0	0	0	0	1	13556	146	6	5		5	RNF19A	8	101273925	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	443210	101273925	45090097	1342	16868										
UBR5	0	genome.wustl.edu	37	chr8	103307710	103307710	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctgtattgacaatgctccAccgtctgccttgcgactgtc	9	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	103307710	103307710	A	C	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.3863	p.V1288G	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	149	1	0.66	115	16	12.21	-	-	-	C	103307710	A	C	103307710	3	2	232	1	0	0	0	0	1	0	0	0	17002	159	6	5	4656	5	UBR5	8	103307710	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2033785	103307710	43056312	1343	16869										
RIMS2	0	genome.wustl.edu	37	chr8	104709398	104709398	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacagcaagaacagaagggTgatgcgccaacctgtggtat	12	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	104709398	104709398	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	silent	c.261	p.G87	0.938	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	276	0	0	214	73	25.35	-	-	-	G	104709398	T	G	104709398	2	3	232	1	0	0	0	0	0	0	0	1	13454	1683	59	5		5	RIMS2	8	104709398	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1401688	104709398	41654624	1344	16870										
RIMS2	0	genome.wustl.edu	37	chr8	105025835	105025835	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagatctgcccctccttcAcctgccttatcgaggtgaaa	9	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	105025835	105025835	A	C	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	silent	c.3210	p.S1070	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	152	1	0.65	73	23	23.71	-	-	-	C	105025835	A	C	105025835	2	2	232	1	0	0	0	0	0	0	0	1	13454	146	6	5		5	RIMS2	8	105025835	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	316437	105025835	41338187	1345	16871										
RIMS2	0	genome.wustl.edu	37	chr8	105263949	105263949	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatggttcaaacttttcccAccttcctccctagtagatcc	6	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	105263949	105263949	A	C	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	silent	c.3951	p.P1317	0.998	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	377	2	0.53	292	49	14.33	-	-	-	C	105263949	A	C	105263949	2	2	232	1	0	0	0	0	0	0	0	1	13454	146	6	5		5	RIMS2	8	105263949	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	238114	105263949	41100073	1346	16872										
DPYS	0	genome.wustl.edu	37	chr8	105441826	105441826	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggggtctggtcgcaaaggTggacccatgacatggtgggc	18	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	105441826	105441826	T	G	SNP	DPYS	ENST00000351513	human	ensembl	69_37n	-1	known	silent	c.897	p.P299	0.790	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647	109	1	0.91	121	20	14.18	-	-	-	G	105441826	T	G	105441826	2	3	232	1	0	0	0	0	0	0	0	1	4781	1683	59	5		5	DPYS	8	105441826	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	177877	105441826	40922196	1347	16873										
CSMD3	0	genome.wustl.edu	37	chr8	114186099	114186099	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcttgtgccatataatacAcctttgggtggaacaccagg	9	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	114186099	114186099	A	C	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.561	p.G187	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	118	0	0	91	25	21.37	-	-	-	C	114186099	A	C	114186099	2	2	232	1	0	0	0	0	0	0	0	1	3978	146	6	5		5	CSMD3	8	114186099	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8744273	114186099	32177923	1348	16874										
COL14A1	0	genome.wustl.edu	37	chr8	121237450	121237450	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgactggagtttttaccAccggtaagcagcctcattat	8	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	121237450	121237450	A	C	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.1861	p.T621P	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	134	0	0	78	19	19.59	-	-	-	C	121237450	A	C	121237450	3	2	232	1	0	0	0	0	1	0	0	0	3701	159	6	5	1915	5	COL14A1	8	121237450	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7051351	121237450	25126572	1349	16875										
KLHL38	0	genome.wustl.edu	37	chr8	124664670	124664670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaggtcggccgatgcggccAcctctgggaaggacgtcagt	15	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	124664670	124664670	A	C	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.497	p.V166G	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	165	0	0	82	21	20.19	-	-	-	C	124664670	A	C	124664670	3	2	232	1	0	0	0	0	1	0	0	0	8443	159	6	5	1260	5	KLHL38	8	124664670	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3427220	124664670	21699352	1350	16876										
FER1L6	0	genome.wustl.edu	37	chr8	125083835	125083835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaagggattccgcccaatcAccctgtcacagtgctgatca	9	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	125083835	125083835	A	C	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.4055	p.H1352P	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	81	0	0	50	11	17.74	-	-	-	C	125083835	A	C	125083835	3	2	232	1	0	0	0	0	1	0	0	0	5861	159	6	5	4173	5	FER1L6	8	125083835	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	419165	125083835	21280187	1351	16877										
TRIB1	0	genome.wustl.edu	37	chr8	126445560	126445560	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccccttctctctacaggTgtttcccattaaacactacc	4	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	126445560	126445560	T	G	SNP	TRIB1	ENST00000311922	human	ensembl	69_37n	1	known	missense	c.362	p.V121G	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB1	HGNC	ENSG00000173334	161	1	0.61	92	20	17.86	-	-	-	G	126445560	T	G	126445560	3	3	232	1	0	0	0	0	1	0	0	0	16578	1710	59	5	368	5	TRIB1	8	126445560	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1361725	126445560	19918462	1352	16878										
GSDMC	0	genome.wustl.edu	37	chr8	130762327	130762327	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtttctttaggatggcaccAccagggccatccaaatgacc	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	130762327	130762327	A	C	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	silent	c.1122	p.G374	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	70	0	0	52	14	21.21	-	-	-	C	130762327	A	C	130762327	2	2	232	1	0	0	0	0	0	0	0	1	6869	146	6	5		5	GSDMC	8	130762327	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4316767	130762327	15601695	1353	16879										
GSDMC	0	genome.wustl.edu	37	chr8	130774949	130774949	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtcagcgccttcttcttcActctgagactctctccttgg	8	14	6	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	130774949	130774949	A	C	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	missense	c.599	p.V200G	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	423	0	0	407	57	12.21	-	-	-	C	130774949	A	C	130774949	3	2	232	1	0	0	0	0	1	0	0	0	6869	159	6	5	967	5	GSDMC	8	130774949	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12622	130774949	15589073	1354	16880										
WISP1	0	genome.wustl.edu	37	chr8	134237704	134237704	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccctggagcccttgctccAccagctgcggcctgggggtc	14	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	134237704	134237704	A	C	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	1	known	missense	c.682	p.T228P	0.982	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	65	0	0	55	8	12.7	-	-	-	C	134237704	A	C	134237704	3	2	232	1	0	0	0	0	1	0	0	0	17469	159	6	5	696	5	WISP1	8	134237704	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3462755	134237704	12126318	1355	16881										
KHDRBS3	0	genome.wustl.edu	37	chr8	136594200	136594200	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcccagaggagtcctgtccAcccgagggccagtgagtcgg	14	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	136594200	136594200	A	C	SNP	KHDRBS3	ENST00000355849	human	ensembl	69_37n	1	known	missense	c.691	p.T231P	0.820	NULL	smart_KH_dom	-	no_errors	KHDRBS3	HGNC	ENSG00000131773	79	0	0	67	21	23.86	-	-	-	C	136594200	A	C	136594200	3	2	232	1	0	0	0	0	1	0	0	0	8200	159	6	5	713	5	KHDRBS3	8	136594200	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2356496	136594200	9769822	1356	16882										
COL22A1	0	genome.wustl.edu	37	chr8	139749809	139749809	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attccaggtggtcccatgtcAcctttcttcccctgagtgta	8	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	139749809	139749809	A	C	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	silent	c.2097	p.G699	0.833	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	101	0	0	125	26	17.22	-	-	-	C	139749809	A	C	139749809	2	2	232	1	0	0	0	0	0	0	0	1	3711	146	6	5		5	COL22A1	8	139749809	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3155609	139749809	6614213	1357	16883										
COL22A1	0	genome.wustl.edu	37	chr8	139767753	139767753	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttcaagccctcttgctgcAcctgagagacaaagcaagca	8	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	8	139767753	139767753	A	C	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.1949	p.V650G	1.000	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	277	0	0	241	28	10.37	-	-	-	C	139767753	A	C	139767753	3	2	232	1	0	0	0	0	1	0	0	0	3711	173	6	5	3115	5	COL22A1	8	139767753	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17944	139767753	6596269	1358	16884										
DMRT2	0	genome.wustl.edu	37	chr9	1056880	1056880	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaggtccgcgttctccccAccccgacggaatttctctcc	9	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	1056880	1056880	A	C	SNP	DMRT2	ENST00000302441	human	ensembl	69_37n	1	known	silent	c.1293	p.P431	0.890	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	293	0	0	222	36	13.85	-	-	-	C	1056880	A	C	1056880	2	2	232	1	0	0	0	0	0	0	0	1	4622	146	6	5		5	DMRT2	9	1056880	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		1056880	140156551	1359	16885										
DMRT2	0	genome.wustl.edu	37	chr9	1056972	1056972	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcaaagaaaacaccaggcAccctctgccacttagacata	6	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	1056972	1056972	A	C	SNP	DMRT2	ENST00000302441	human	ensembl	69_37n	1	known	missense	c.1385	p.H462P	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	245	0	0	160	51	24.06	-	-	-	C	1056972	A	C	1056972	3	2	232	1	0	0	0	0	1	0	0	0	4622	159	6	5	1452	5	DMRT2	9	1056972	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	92	1056972	140156459	1360	16886										
KIAA0020	0	genome.wustl.edu	37	chr9	2837292	2837292	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttattcttgaactgctttacAccctttttcccaagttttgt	4	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	2837292	2837292	A	C	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	silent	c.192	p.G64	0.991	NULL	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	345	1	0.29	281	34	10.69	-	-	-	C	2837292	A	C	2837292	2	2	232	1	0	0	0	0	0	0	0	1	8204	146	6	5		5	KIAA0020	9	2837292	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1780320	2837292	138376139	1361	16887										
SLC1A1	0	genome.wustl.edu	37	chr9	4583144	4583144	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctgcccgccgaggatgtcAccctgatcattgctgtcgac	11	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	4583144	4583144	A	C	SNP	SLC1A1	ENST00000262352	human	ensembl	69_37n	1	known	missense	c.1300	p.T434P	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A1	HGNC	ENSG00000106688	151	1	0.66	115	19	14.18	-	-	-	C	4583144	A	C	4583144	3	2	232	1	0	0	0	0	1	0	0	0	14520	159	6	5	1342	5	SLC1A1	9	4583144	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1745852	4583144	136630287	1362	16888										
KIAA1432	0	genome.wustl.edu	37	chr9	5757375	5757375	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtcacgctacattcctcAccctttcctggtggtatctg	7	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	5757375	5757375	A	C	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.1679	p.H560P	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	317	3	0.93	253	45	15.05	-	-	-	C	5757375	A	C	5757375	3	2	232	1	0	0	0	0	1	0	0	0	8285	159	6	5	1741	5	KIAA1432	9	5757375	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1174231	5757375	135456056	1363	16889										
ERMP1	0	genome.wustl.edu	37	chr9	5805087	5805087	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgccagcacaacatcaggTgggatttcagaaccacttct	9	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	5805087	5805087	T	G	SNP	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	silent	c.1854	p.P618	0.980	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	269	1	0.37	246	52	17.39	-	-	-	G	5805087	T	G	5805087	2	3	232	1	0	0	0	0	0	0	0	1	5273	1683	59	5		5	ERMP1	9	5805087	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	47712	5805087	135408344	1364	16890										
KIAA2026	0	genome.wustl.edu	37	chr9	5920350	5920350	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagtaccaggtgccaaaggTgtactggtattgatgactat	12	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	5920350	5920350	T	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	silent	c.5646	p.T1882	0.982	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	461	3	0.65	310	42	11.86	-	-	-	G	5920350	T	G	5920350	2	3	232	1	0	0	0	0	0	0	0	1	8322	1683	59	5		5	KIAA2026	9	5920350	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	115263	5920350	135293081	1365	16891										
KIAA2026	0	genome.wustl.edu	37	chr9	5921650	5921650	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctgaccttgtaacagggTaactttttgtgatataatct	7	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	5921650	5921650	T	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.4346	p.Y1449S	0.686	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	223	0	0	157	19	10.73	-	-	-	G	5921650	T	G	5921650	3	3	232	1	0	0	0	0	1	0	0	0	8322	1638	57	5	1969	5	KIAA2026	9	5921650	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1300	5921650	135291781	1366	16892										
UHRF2	0	genome.wustl.edu	37	chr9	6477776	6477776	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catatttactgtctgaatccAcctttggataaagtcccaga	6	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	6477776	6477776	A	C	SNP	UHRF2	ENST00000276893	human	ensembl	69_37n	1	known	silent	c.1128	p.P376	0.976	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854	228	0	0	236	27	10.27	-	-	-	C	6477776	A	C	6477776	2	2	232	1	0	0	0	0	0	0	0	1	17067	146	6	5		5	UHRF2	9	6477776	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	556126	6477776	134735655	1367	16893										
GLDC	0	genome.wustl.edu	37	chr9	6605174	6605174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagttccgtaaagtcttccAccttcccctccgtgtctggg	9	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	6605174	6605174	A	C	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.818	p.V273G	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	114	1	0.87	90	23	20.35	-	-	-	C	6605174	A	C	6605174	3	2	232	1	0	0	0	0	1	0	0	0	6485	159	6	5	2324	5	GLDC	9	6605174	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	127398	6605174	134608257	1368	16894										
KDM4C	0	genome.wustl.edu	37	chr9	6849509	6849509	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttctctctcattccagggTgtggatgaatggaacatagc	10	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	6849509	6849509	T	G	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	silent	c.438	p.G146	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	236	0	0	258	36	12.2	-	-	-	G	6849509	T	G	6849509	2	3	232	1	0	0	0	0	0	0	0	1	8184	1683	59	5		5	KDM4C	9	6849509	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	244335	6849509	134363922	1369	16895										
PTPRD	0	genome.wustl.edu	37	chr9	8528725	8528725	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgtgcgagtacgctcaaccAccttcaactgtgggcccatg	10	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	8528725	8528725	A	C	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.407	p.V136G	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	198	2	1	121	30	19.74	-	-	-	C	8528725	A	C	8528725	3	2	232	1	0	0	0	0	1	0	0	0	12882	159	6	5	5527	5	PTPRD	9	8528725	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1679216	8528725	132684706	1370	16896										
TYRP1	0	genome.wustl.edu	37	chr9	12695809	12695809	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcacatggcacaggtaccAcctcctgcgtctggagaaag	10	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	12695809	12695809	A	C	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	missense	c.680	p.H227P	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	206	0	0	138	34	19.77	-	-	-	C	12695809	A	C	12695809	3	2	232	1	0	0	0	0	1	0	0	0	16913	159	6	5	686	5	TYRP1	9	12695809	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4167084	12695809	128517622	1371	16897										
FREM1	0	genome.wustl.edu	37	chr9	14775942	14775942	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtccacatcctgctgggTgaaattgtgttgaagtagcc	12	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	14775942	14775942	T	G	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.4705	p.T1569P	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	204	0	0	186	32	14.61	-	-	-	G	14775942	T	G	14775942	3	3	232	1	0	0	0	0	1	0	0	0	6093	1696	59	5	1889	5	FREM1	9	14775942	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2080133	14775942	126437489	1372	16898										
TTC39B	0	genome.wustl.edu	37	chr9	15211274	15211274	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgtcatacttttggcaggTttgtaaagcgtccttcatgg	10	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	15211274	15211274	T	G	SNP	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	missense	c.604	p.T202P	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	122	1	0.81	64	18	21.69	-	-	-	G	15211274	T	G	15211274	3	3	232	1	0	0	0	0	1	0	0	0	16805	1725	60	5	1529	5	TTC39B	9	15211274	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	435332	15211274	126002157	1373	16899										
DENND4C	0	genome.wustl.edu	37	chr9	19299256	19299256	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgatgcattaatattatcAcagccagtttctacaccttt	4	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	19299256	19299256	A	C	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	silent	c.429	p.S143	0.999	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	61	0	0	50	20	28.57	-	-	-	C	19299256	A	C	19299256	2	2	232	1	0	0	0	0	0	0	0	1	4471	146	6	5		5	DENND4C	9	19299256	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4087982	19299256	121914175	1374	16900										
ACER2	0	genome.wustl.edu	37	chr9	19434959	19434959	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcaggggtaggttcaaggTggtggtcagtgtcctgtctg	16	6	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	19434959	19434959	T	G	SNP	ACER2	ENST00000340967	human	ensembl	69_37n	1	known	missense	c.380	p.V127G	0.169	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER2	HGNC	ENSG00000177076	275	0	0	162	24	12.83	-	-	-	G	19434959	T	G	19434959	3	3	232	1	0	0	0	0	1	0	0	0	139	1696	59	5	394	5	ACER2	9	19434959	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	135703	19434959	121778472	1375	16901										
SLC24A2	0	genome.wustl.edu	37	chr9	19619603	19619603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcggcgagtgggtcaagggTgtgtatcatgagttggaaga	17	4	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	19619603	19619603	T	G	SNP	SLC24A2	ENST00000341998	human	ensembl	69_37n	-1	known	missense	c.1057	p.T353P	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A2	HGNC	ENSG00000155886	232	2	0.85	167	27	13.85	-	-	-	G	19619603	T	G	19619603	3	3	232	1	0	0	0	0	1	0	0	0	14555	1696	59	5	960	5	SLC24A2	9	19619603	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	184644	19619603	121593828	1376	16902										
SLC24A2	0	genome.wustl.edu	37	chr9	19786333	19786333	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctcctgcagccatgaaggTggctccagccacatcatcag	9	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	19786333	19786333	T	G	SNP	SLC24A2	ENST00000341998	human	ensembl	69_37n	-1	known	missense	c.532	p.T178P	1.000	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A2	HGNC	ENSG00000155886	96	0	0	44	10	18.52	-	-	-	G	19786333	T	G	19786333	3	3	232	1	0	0	0	0	1	0	0	0	14555	1696	59	5	1493	5	SLC24A2	9	19786333	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	166730	19786333	121427098	1377	16903										
IFNA21	0	genome.wustl.edu	37	chr9	21166226	21166226	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcaggggagtctcttccAccccaacctcctgtatcacg	7	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	21166226	21166226	A	C	SNP	IFNA21	ENST00000380225	human	ensembl	69_37n	-1	known	missense	c.386	p.V129G	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA21	HGNC	ENSG00000137080	515	4	0.77	420	59	12.29	-	-	-	C	21166226	A	C	21166226	3	2	232	1	0	0	0	0	1	0	0	0	7592	159	6	5	187	5	IFNA21	9	21166226	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1379893	21166226	120047205	1378	16904										
IFNA14	0	genome.wustl.edu	37	chr9	21239549	21239549	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcaggggagtctcttccAccccaacctcctgtatcaca	6	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	21239549	21239549	A	C	SNP	IFNA14	ENST00000380222	human	ensembl	69_37n	-1	known	missense	c.386	p.V129G	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA14	HGNC	ENSG00000228083	466	2	0.42	475	95	16.64	-	-	-	C	21239549	A	C	21239549	3	2	232	1	0	0	0	0	1	0	0	0	7588	159	6	5	187	5	IFNA14	9	21239549	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	73323	21239549	119973882	1379	16905										
IFNA6	0	genome.wustl.edu	37	chr9	21350852	21350852	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgacttgcagctgagcaccAccagggccatcagtaaagca	10	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	21350852	21350852	A	C	SNP	IFNA6	ENST00000380210	human	ensembl	69_37n	-1	known	missense	c.35	p.V12G	0.719	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA6	HGNC	ENSG00000120235	202	0	0	154	27	14.84	-	-	-	C	21350852	A	C	21350852	3	2	232	1	0	0	0	0	1	0	0	0	7595	159	6	5	536	5	IFNA6	9	21350852	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	111303	21350852	119862579	1380	16906										
IFNA8	0	genome.wustl.edu	37	chr9	21409555	21409555	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcctgtgtgatgcaggaagTgggggtgatagagtctcccc	16	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	21409555	21409555	T	G	SNP	IFNA8	ENST00000380205	human	ensembl	69_37n	1	known	missense	c.380	p.V127G	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA8	HGNC	ENSG00000120242	290	1	0.34	312	45	12.57	-	-	-	G	21409555	T	G	21409555	3	3	232	1	0	0	0	0	1	0	0	0	7597	1696	59	5	382	5	IFNA8	9	21409555	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	58703	21409555	119803876	1381	16907										
TEK	0	genome.wustl.edu	37	chr9	27157842	27157842	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttttaggaactgtggaaggTgccatggacttgatcttgat	12	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	27157842	27157842	T	G	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.66	p.G22	0.995	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	210	1	0.47	129	21	13.91	-	-	-	G	27157842	T	G	27157842	2	3	232	1	0	0	0	0	0	0	0	1	15846	1683	59	5		5	TEK	9	27157842	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5748287	27157842	114055589	1382	16908										
ACO1	0	genome.wustl.edu	37	chr9	32418390	32418390	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaggaatcatccaccaggTgaatttggaatatttggcaa	9	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	32418390	32418390	T	G	SNP	ACO1	ENST00000309951	human	ensembl	69_37n	1	known	missense	c.539	p.V180G	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729	174	1	0.57	156	24	13.33	-	-	-	G	32418390	T	G	32418390	3	3	232	1	0	0	0	0	1	0	0	0	146	1696	59	5	557	5	ACO1	9	32418390	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5260548	32418390	108795041	1383	16909										
DDX58	0	genome.wustl.edu	37	chr9	32492507	32492507	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattccaccaatttctctgcAcctgccatcatccccttagt	3	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	32492507	32492507	A	C	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	silent	c.453	p.G151	1.000	NULL	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	149	1	0.66	112	37	24.83	-	-	-	C	32492507	A	C	32492507	2	2	232	1	0	0	0	0	0	0	0	1	4406	146	6	5		5	DDX58	9	32492507	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	74117	32492507	108720924	1384	16910										
B4GALT1	0	genome.wustl.edu	37	chr9	33135302	33135302	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaatggaatgatgatggccAccttgtgaggagagacgcag	16	6	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	33135302	33135302	A	C	SNP	B4GALT1	ENST00000379731	human	ensembl	69_37n	-1	known	missense	c.533	p.V178G	1.000	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT1	HGNC	ENSG00000086062	108	0	0	92	20	17.7	-	-	-	C	33135302	A	C	33135302	3	2	232	1	0	0	0	0	1	0	0	0	1274	159	6	5	683	5	B4GALT1	9	33135302	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	642795	33135302	108078129	1385	16911										
AQP7	0	genome.wustl.edu	37	chr9	33385049	33385049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtaagggtggggcagggTggactgaagatctgttggca	18	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	33385049	33385049	T	G	SNP	AQP7	ENST00000297988	human	ensembl	69_37n	-1	known	missense	c.983	p.H328P	0.000	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP7	HGNC	ENSG00000165269	209	0	0	147	29	16.48	-	-	-	G	33385049	T	G	33385049	3	3	232	1	0	0	0	0	1	0	0	0	833	1696	59	5	49	5	AQP7	9	33385049	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	249747	33385049	107828382	1386	16912										
PRSS3	0	genome.wustl.edu	37	chr9	33796685	33796685	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaagattgttgggggctacAcctgtgaggagaattctctc	12	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	33796685	33796685	A	C	SNP	PRSS3	ENST00000361005	human	ensembl	69_37n	1	known	missense	c.256	p.T86P	0.999	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438	151	0	0	132	21	13.64	-	-	-	C	33796685	A	C	33796685	3	2	232	1	0	0	0	0	1	0	0	0	12702	159	6	5	306	5	PRSS3	9	33796685	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	411636	33796685	107416746	1387	16913										
UBAP2	0	genome.wustl.edu	37	chr9	33948440	33948440	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagaagtagtagttgtagggTgacttgtactattctgctgt	12	4	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	33948440	33948440	T	G	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	missense	c.1202	p.H401P	0.467	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	202	1	0.49	141	30	17.54	-	-	-	G	33948440	T	G	33948440	3	3	232	1	0	0	0	0	1	0	0	0	16934	1696	59	5	2225	5	UBAP2	9	33948440	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	151755	33948440	107264991	1388	16914										
KIF24	0	genome.wustl.edu	37	chr9	34257302	34257302	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggctgttggaactgctggTgatagaaacgcagatgttcc	14	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	34257302	34257302	T	G	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	missense	c.2303	p.H768P	1.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	143	0	0	106	18	14.52	-	-	-	G	34257302	T	G	34257302	3	3	232	1	0	0	0	0	1	0	0	0	8344	1696	59	5	1815	5	KIF24	9	34257302	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	308862	34257302	106956129	1389	16915										
KIF24	0	genome.wustl.edu	37	chr9	34259647	34259647	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagtggccacgtggcttggTgagatgttggcgatcatgca	15	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	34259647	34259647	T	G	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	silent	c.1572	p.S524	0.995	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	95	0	0	93	22	19.13	-	-	-	G	34259647	T	G	34259647	2	3	232	1	0	0	0	0	0	0	0	1	8344	1683	59	5		5	KIF24	9	34259647	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2345	34259647	106953784	1390	16916										
C9orf24	0	genome.wustl.edu	37	chr9	34382668	34382668	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcaatgaggacctaatggTgaaatatcagtcactgtagt	10	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	34382668	34382668	T	G	SNP	C9orf24	ENST00000444429	human	ensembl	69_37n	-1	known	silent	c.376	NULL	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C9orf24	HGNC	ENSG00000164972	49	0	0	43	12	21.82	-	-	-	G	34382668	T	G	34382668	2	3	232	1	0	0	0	0	0	0	0	1	2500	1711	59	5		5	C9orf24	9	34382668	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	123021	34382668	106830763	1391	16917										
DNAI1	0	genome.wustl.edu	37	chr9	34514628	34514628	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgggctttccaccctccAcctctgcaggaccccgatgt	8	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	34514628	34514628	A	C	SNP	DNAI1	ENST00000485580	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAI1	HGNC	ENSG00000122735	97	0	0	68	13	15.48	-	-	-	C	34514628	A	C	34514628	1	2	232	0	1	0	0	0	0	0	0	0	4644	174	6	5		5	DNAI1	9	34514628	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	131960	34514628	106698803	1392	16918										
C9orf131	0	genome.wustl.edu	37	chr9	35043448	35043448	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgatcctcagctgcttccAcctccatcttctccttctgt	4	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35043448	35043448	A	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	silent	c.822	p.P274	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	442	4	0.89	357	55	13.35	-	-	-	C	35043448	A	C	35043448	2	2	232	1	0	0	0	0	0	0	0	1	2482	146	6	5		5	C9orf131	9	35043448	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	528820	35043448	106169983	1393	16919										
C9orf131	0	genome.wustl.edu	37	chr9	35044318	35044318	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatctctggccctcagcccAcccccagctcttgcaccgga	7	21	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35044318	35044318	A	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	silent	c.1692	p.P564	0.005	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	450	1	0.22	343	67	16.26	-	-	-	C	35044318	A	C	35044318	2	2	232	1	0	0	0	0	0	0	0	1	2482	146	6	5		5	C9orf131	9	35044318	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	870	35044318	106169113	1394	16920										
C9orf131	0	genome.wustl.edu	37	chr9	35045220	35045220	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcctcccactgtcatcActtccaatcctcttcccagc	3	20	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35045220	35045220	A	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.2594	p.H865P	0.002	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	621	5	0.79	485	59	10.77	-	-	-	C	35045220	A	C	35045220	3	2	232	1	0	0	0	0	1	0	0	0	2482	159	6	5	2616	5	C9orf131	9	35045220	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	902	35045220	106168211	1395	16921										
C9orf131	0	genome.wustl.edu	37	chr9	35045544	35045544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagtcacagggaagaaccAccctgcccaggccagaagcc	10	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35045544	35045544	A	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.2918	p.H973P	0.015	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	271	1	0.37	170	26	13.27	-	-	-	C	35045544	A	C	35045544	3	2	232	1	0	0	0	0	1	0	0	0	2482	159	6	5	2940	5	C9orf131	9	35045544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	324	35045544	106167887	1396	16922										
VCP	0	genome.wustl.edu	37	chr9	35064200	35064200	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgtctcaggggcagttccAccatctcctttatctgagct	9	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35064200	35064200	A	C	SNP	VCP	ENST00000358901	human	ensembl	69_37n	-1	known	missense	c.659	p.V220G	1.000	tigrfam_ATPase_AAA_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	137	1	0.72	125	19	13.19	-	-	-	C	35064200	A	C	35064200	3	2	232	1	0	0	0	0	1	0	0	0	17237	159	6	5	1809	5	VCP	9	35064200	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18656	35064200	106149231	1397	16923										
RUSC2	0	genome.wustl.edu	37	chr9	35558518	35558518	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagccaattcccagagctcAccagtcataccatgcgcttc	6	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35558518	35558518	A	C	SNP	RUSC2	ENST00000361226	human	ensembl	69_37n	1	known	missense	c.3295	p.T1099P	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853	273	2	0.73	191	33	14.67	-	-	-	C	35558518	A	C	35558518	3	2	232	1	0	0	0	0	1	0	0	0	13837	159	6	5	3321	5	RUSC2	9	35558518	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	494318	35558518	105654913	1398	16924										
TESK1	0	genome.wustl.edu	37	chr9	35607581	35607581	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcccctgcccctgcagggAgggggcaaggaaggagccat	16	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35607581	35607581	A	G	SNP	TESK1	ENST00000336395	human	ensembl	69_37n	1	known	missense	c.623	p.E208G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140	82	0	0	44	18	29.03	-	-	-	G	35607581	A	G	35607581	3	3	232	1	0	0	0	0	1	0	0	0	15862	304	11	5	645	5	TESK1	9	35607581	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	49063	35607581	105605850	1399	16925										
GBA2	0	genome.wustl.edu	37	chr9	35738184	35738184	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaaaaataaggctcctggTgtcctctcagctgccttaag	10	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35738184	35738184	T	G	SNP	GBA2	ENST00000378088	human	ensembl	69_37n	-1	known	silent	c.66	p.T22	0.000	NULL	pfam_Glucosylceramidase	-	no_errors	GBA2	HGNC	ENSG00000070610	182	1	0.55	117	19	13.97	-	-	-	G	35738184	T	G	35738184	2	3	232	1	0	0	0	0	0	0	0	1	6317	1711	59	5		5	GBA2	9	35738184	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	130603	35738184	105475247	1400	16926										
NPR2	0	genome.wustl.edu	37	chr9	35800770	35800770	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggacggcctattccctgggTgaagggggctcctccctcgg	16	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	35800770	35800770	T	G	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.1283	p.V428G	1.000	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	140	1	0.7	173	26	13.07	-	-	-	G	35800770	T	G	35800770	3	3	232	1	0	0	0	0	1	0	0	0	10668	1696	59	5	1305	5	NPR2	9	35800770	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	62586	35800770	105412661	1401	16927										
CCIN	0	genome.wustl.edu	37	chr9	36170027	36170027	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcacttcatgcgctgtccAcctgttatctttggccgcct	8	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	36170027	36170027	A	C	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	silent	c.528	p.P176	0.379	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	80	0	0	43	8	15.69	-	-	-	C	36170027	A	C	36170027	2	2	232	1	0	0	0	0	0	0	0	1	2905	146	6	5		5	CCIN	9	36170027	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	369257	36170027	105043404	1402	16928										
PAX5	0	genome.wustl.edu	37	chr9	37006507	37006507	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgggactggttggttgggTggctgctgtacttttgtccg	17	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	37006507	37006507	T	G	SNP	PAX5	ENST00000358127	human	ensembl	69_37n	-1	known	silent	c.438	p.P146	0.732	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	117	0	0	67	19	22.09	-	-	-	G	37006507	T	G	37006507	2	3	232	1	0	0	0	0	0	0	0	1	11555	1683	59	5		5	PAX5	9	37006507	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	836480	37006507	104206924	1403	16929										
GRHPR	0	genome.wustl.edu	37	chr9	37429673	37429673	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgttccagaaatgctgggTggtgtccctaccctttgcgg	13	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	37429673	37429673	T	G	SNP	GRHPR	ENST00000494290	human	ensembl	69_37n	1	known	silent	c.9	p.G3	0.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106	46	0	0	27	10	27.03	-	-	-	G	37429673	T	G	37429673	2	3	232	1	0	0	0	0	0	0	0	1	6817	1711	59	5		5	GRHPR	9	37429673	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	423166	37429673	103783758	1404	16930										
ZBTB5	0	genome.wustl.edu	37	chr9	37442334	37442334	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcaaaggcctctgctgtcAccacctcgctatccagctgg	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	37442334	37442334	A	C	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.215	p.V72G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	79	0	0	88	18	16.98	-	-	-	C	37442334	A	C	37442334	3	2	232	1	0	0	0	0	1	0	0	0	17647	159	6	5	1822	5	ZBTB5	9	37442334	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12661	37442334	103771097	1405	16931										
DCAF10	0	genome.wustl.edu	37	chr9	37854793	37854793	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtaggtatacagaagatgggTgtccacataagaaattcttt	10	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	37854793	37854793	T	G	SNP	DCAF10	ENST00000377724	human	ensembl	69_37n	1	known	missense	c.868	p.C290G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF10	HGNC	ENSG00000122741	152	1	0.65	114	25	17.99	-	-	-	G	37854793	T	G	37854793	3	3	232	1	0	0	0	0	1	0	0	0	4293	1696	59	5	882	5	DCAF10	9	37854793	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	412459	37854793	103358638	1406	16932										
DCAF10	0	genome.wustl.edu	37	chr9	37860210	37860210	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtacaggcagcagcactccAccttcaacagggctcattgg	11	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	37860210	37860210	A	C	SNP	DCAF10	ENST00000461549	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF10	HGNC	ENSG00000122741	72	0	0	60	17	21.52	-	-	-	C	37860210	A	C	37860210	1	2	232	0	1	0	0	0	0	0	0	0	4293	174	6	5		5	DCAF10	9	37860210	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5417	37860210	103353221	1407	16933										
FAM75A6	0	genome.wustl.edu	37	chr9	43627223	43627223	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctcggcctgagccataggTgtgggcaggaattggggtgt	18	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	43627223	43627223	T	G	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	silent	c.1464	p.T488	0.003	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	609	3	0.49	332	45	11.84	-	-	-	G	43627223	T	G	43627223	2	3	232	1	0	0	0	0	0	0	0	1	5667	1683	59	5		5	FAM75A6	9	43627223	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5767013	43627223	97586208	1408	16934										
FAM122A	0	genome.wustl.edu	37	chr9	71395400	71395400	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacggtccacgaacgggaggTgcagaccgcaatgcagataa	14	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	71395400	71395400	T	G	SNP	FAM122A	ENST00000394264	human	ensembl	69_37n	1	known	missense	c.320	p.V107G	1.000	NULL	NULL	-	no_errors	FAM122A	HGNC	ENSG00000187866	131	0	0	91	23	20.18	-	-	-	G	71395400	T	G	71395400	3	3	232	1	0	0	0	0	1	0	0	0	5459	1696	59	5	322	5	FAM122A	9	71395400	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	27768177	71395400	69818031	1409	16935										
TJP2	0	genome.wustl.edu	37	chr9	71866089	71866089	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctgttgcagcaaaacctAcctttgggcggtctatactg	9	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	71866089	71866089	A	C	SNP	TJP2	ENST00000539225	human	ensembl	69_37n	1	known	missense	c.3223	p.T1075P	0.260	prints_ZonOcculS2	pfam_PDZ,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	271	2	0.73	184	29	13.55	-	-	-	C	71866089	A	C	71866089	3	2	232	1	0	0	0	0	1	0	0	0	16025	391	14	5	3471	5	TJP2	9	71866089	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	470689	71866089	69347342	1410	16936										
FAM189A2	0	genome.wustl.edu	37	chr9	71990653	71990653	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacctttcctccgttaaggTggacttaggtgaaggcaaga	11	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	71990653	71990653	T	G	SNP	FAM189A2	ENST00000257515	human	ensembl	69_37n	1	known	missense	c.125	p.V42G	1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189A2	HGNC	ENSG00000135063	205	1	0.48	196	32	14.04	-	-	-	G	71990653	T	G	71990653	3	3	232	1	0	0	0	0	1	0	0	0	5558	1710	59	5	135	5	FAM189A2	9	71990653	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	124564	71990653	69222778	1411	16937										
TMC1	0	genome.wustl.edu	37	chr9	75435971	75435971	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacatgatcgtgtccctcccAccatcttttgattgtggtcc	7	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	75435971	75435971	A	C	SNP	TMC1	ENST00000297784	human	ensembl	69_37n	1	known	silent	c.1977	p.P659	0.102	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091	206	0	0	176	31	14.9	-	-	-	C	75435971	A	C	75435971	2	2	232	1	0	0	0	0	0	0	0	1	16079	146	6	5		5	TMC1	9	75435971	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3445318	75435971	65777460	1412	16938										
ANXA1	0	genome.wustl.edu	37	chr9	75783706	75783706	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagtgtagagaccggatggTgagagatgagttaggaagtt	16	3	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	75783706	75783706	T	G	SNP	ANXA1	ENST00000491192	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANXA1	HGNC	ENSG00000135046	23	0	0	5	11	68.75	-	-	-	G	75783706	T	G	75783706	1	3	232	0	1	0	0	0	0	0	0	0	713	1711	59	5		5	ANXA1	9	75783706	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	347735	75783706	65429725	1413	16939										
TRPM6	0	genome.wustl.edu	37	chr9	77377964	77377964	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagatcctgcaggtgtcccAcctggctgtccaaagacagt	11	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	77377964	77377964	A	C	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.3623	p.V1208G	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	215	1	0.46	136	19	12.18	-	-	-	C	77377964	A	C	77377964	3	2	232	1	0	0	0	0	1	0	0	0	16686	159	6	5	2501	5	TRPM6	9	77377964	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1594258	77377964	63835467	1414	16940										
TRPM6	0	genome.wustl.edu	37	chr9	77427300	77427300	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaagagcttcacaaaatccAcccgatccatcactaaagca	4	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	77427300	77427300	A	C	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.1358	p.V453G	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	136	0	0	127	32	20.13	-	-	-	C	77427300	A	C	77427300	3	2	232	1	0	0	0	0	1	0	0	0	16686	159	6	5	4822	5	TRPM6	9	77427300	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	49336	77427300	63786131	1415	16941										
PCSK5	0	genome.wustl.edu	37	chr9	78686782	78686782	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggacggaccagcccccctcAcccggcaagcctttgaaaac	9	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	78686782	78686782	A	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.862	p.T288P	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	218	1	0.45	245	45	15.41	-	-	-	C	78686782	A	C	78686782	3	2	232	1	0	0	0	0	1	0	0	0	11676	159	6	5	888	5	PCSK5	9	78686782	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1259482	78686782	62526649	1416	16942										
PCSK5	0	genome.wustl.edu	37	chr9	78774015	78774015	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgcgcatcaccatcacccAccccaggagaggagacctgg	11	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	78774015	78774015	A	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.1547	p.H516P	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	223	2	0.88	178	44	19.64	-	-	-	C	78774015	A	C	78774015	3	2	232	1	0	0	0	0	1	0	0	0	11676	159	6	5	1593	5	PCSK5	9	78774015	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87233	78774015	62439416	1417	16943										
PRUNE2	0	genome.wustl.edu	37	chr9	79324285	79324285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgatgtgtaagagtctgaggTggaataattggtatctaagg	14	2	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	79324285	79324285	T	G	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1828	p.T610P	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	165	1	0.6	102	21	16.94	-	-	-	G	79324285	T	G	79324285	3	3	232	1	0	0	0	0	1	0	0	0	12721	1696	59	5	6409	5	PRUNE2	9	79324285	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	550270	79324285	61889146	1418	16944										
TLE4	0	genome.wustl.edu	37	chr9	82320815	82320815	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaatgcaggacagcgatggTgagaaaagtgatgacaactt	12	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	82320815	82320815	T	G	SNP	TLE4	ENST00000496114	human	ensembl	69_37n	1	novel	nonstop	c.112	p.*38G	0.604	NULL	superfamily_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TLE4	HGNC	ENSG00000106829	354	0	0	264	32	10.81	-	-	-	G	82320815	T	G	82320815	4	3	232	1	0	0	0	0	0	0	0	0	16036	1683	59	5	779	5	TLE4	9	82320815	Nonstop_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2996530	82320815	58892616	1419	16945										
TLE1	0	genome.wustl.edu	37	chr9	84235381	84235381	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctggagtccttatcatccAccttccttttcttgatgtca	7	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	84235381	84235381	A	C	SNP	TLE1	ENST00000376499	human	ensembl	69_37n	-1	known	missense	c.686	p.V229G	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781	145	0	0	111	19	14.39	-	-	-	C	84235381	A	C	84235381	3	2	232	1	0	0	0	0	1	0	0	0	16033	159	6	5	1674	5	TLE1	9	84235381	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1914566	84235381	56978050	1420	16946										
RASEF	0	genome.wustl.edu	37	chr9	85615090	85615090	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatacgagccatacccagggTggcgcttatattttctcgaa	9	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	85615090	85615090	T	G	SNP	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	missense	c.1717	p.T573P	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	256	0	0	125	18	12.59	-	-	-	G	85615090	T	G	85615090	3	3	232	1	0	0	0	0	1	0	0	0	13151	1696	59	5	529	5	RASEF	9	85615090	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1379709	85615090	55598341	1421	16947										
AGTPBP1	0	genome.wustl.edu	37	chr9	88207586	88207586	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggattttcccttttgcccAcctgcagcaactgaacttct	6	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	88207586	88207586	A	C	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	silent	c.2493	p.G831	0.985	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	293	0	0	228	28	10.94	-	-	-	C	88207586	A	C	88207586	2	2	232	1	0	0	0	0	0	0	0	1	400	146	6	5		5	AGTPBP1	9	88207586	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2592496	88207586	53005845	1422	16948										
ZCCHC6	0	genome.wustl.edu	37	chr9	88938451	88938451	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggatggtatactttatcAcccttgtaatcatcagagtt	7	8	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	88938451	88938451	A	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	silent	c.2214	p.G738	0.001	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	184	0	0	141	24	14.55	-	-	-	C	88938451	A	C	88938451	2	2	232	1	0	0	0	0	0	0	0	1	17688	146	6	5		5	ZCCHC6	9	88938451	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	730865	88938451	52274980	1423	16949										
SYK	0	genome.wustl.edu	37	chr9	93636990	93636990	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctacccatggacacagaggTgtacgagagcccctacgcgg	12	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	93636990	93636990	T	G	SNP	SYK	ENST00000375746	human	ensembl	69_37n	1	known	missense	c.1040	p.V347G	1.000	superfamily_Kinase-like_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	176	1	0.56	156	31	16.58	-	-	-	G	93636990	T	G	93636990	3	3	232	1	0	0	0	0	1	0	0	0	15530	1696	59	5	1070	5	SYK	9	93636990	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4698539	93636990	47576441	1424	16950										
NFIL3	0	genome.wustl.edu	37	chr9	94172891	94172891	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcactgagaagcagctcctcAcctgttgtggagtcttctga	10	11	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	94172891	94172891	A	C	SNP	NFIL3	ENST00000297689	human	ensembl	69_37n	-1	known	silent	c.126	p.G42	0.000	pirsf_TF_bZIP_E4BP4	pfam_Vert_IL3-reg_TF,pfam_bZIP_2,pfam_bZIP_1,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	-	no_errors	NFIL3	HGNC	ENSG00000165030	168	0	0	130	35	21.21	-	-	-	C	94172891	A	C	94172891	2	2	232	1	0	0	0	0	0	0	0	1	10445	146	6	5		5	NFIL3	9	94172891	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	535901	94172891	47040540	1425	16951										
ECM2	0	genome.wustl.edu	37	chr9	95277311	95277311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctctgtatcttcttctttcActtcttcatcctcctcagat	3	14	8	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	95277311	95277311	A	C	SNP	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	missense	c.656	p.V219G	0.000	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	401	1	0.25	332	38	10.22	-	-	-	C	95277311	A	C	95277311	3	2	232	1	0	0	0	0	1	0	0	0	4933	159	6	5	1471	5	ECM2	9	95277311	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1104420	95277311	45936120	1426	16952										
FANCC	0	genome.wustl.edu	37	chr9	97873816	97873816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagagccacagcagggccgTggggggttcggctgccgaca	17	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	97873816	97873816	T	G	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	missense	c.1258	p.T420P	0.007	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	48	0	0	26	11	28.21	-	-	-	G	97873816	T	G	97873816	3	3	232	1	0	0	0	0	1	0	0	0	5710	1696	59	5	430	5	FANCC	9	97873816	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2596505	97873816	43339615	1427	16953										
HABP4	0	genome.wustl.edu	37	chr9	99227625	99227625	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactccttcctagaccaggTgataggtttgatcgagacag	10	11	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	99227625	99227625	T	G	SNP	HABP4	ENST00000375249	human	ensembl	69_37n	1	known	silent	c.519	p.G173	0.181	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956	251	2	0.79	169	23	11.98	-	-	-	G	99227625	T	G	99227625	2	3	232	1	0	0	0	0	0	0	0	1	6990	1683	59	5		5	HABP4	9	99227625	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1353809	99227625	41985806	1428	16954										
TDRD7	0	genome.wustl.edu	37	chr9	100234614	100234614	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaccctgatctagtgaaggTggttgaatctttaacttgtg	11	6	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	100234614	100234614	T	G	SNP	TDRD7	ENST00000355295	human	ensembl	69_37n	1	known	missense	c.1781	p.V594G	0.998	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	233	0	0	139	28	16.67	-	-	-	G	100234614	T	G	100234614	3	3	232	1	0	0	0	0	1	0	0	0	15830	1696	59	5	1815	5	TDRD7	9	100234614	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1006989	100234614	40978817	1429	16955										
TBC1D2	0	genome.wustl.edu	37	chr9	100971376	100971376	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttggccagcagcttcaggTcttccacctcatagtcgggc	10	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	100971376	100971376	T	G	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.1724	p.D575A	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	348	3	0.85	212	29	11.98	-	-	-	G	100971376	T	G	100971376	3	3	232	1	0	0	0	0	1	0	0	0	15700	1667	58	5	1049	5	TBC1D2	9	100971376	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	736762	100971376	40242055	1430	16956										
NR4A3	0	genome.wustl.edu	37	chr9	102589061	102589061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcatcccatacatgcatgaCtcaatcagatttggaaatgt	6	9	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	102589061	102589061	C	G	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	missense	c.9	p.D3E	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	66	0	0	36	5	12.2	-	-	-	G	102589061	C	G	102589061	3	3	232	1	0	0	0	0	1	0	0	0	10707	564	20	4	11	4	NR4A3	9	102589061	Missense_Mutation	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	1617685	102589061	38624370	1431	16957										
GRIN3A	0	genome.wustl.edu	37	chr9	104449272	104449272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagctcaagaggtcctgggTggaggggaggttagcggtga	20	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	104449272	104449272	T	G	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.910	p.T304P	0.993	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	162	0	0	152	33	17.84	-	-	-	G	104449272	T	G	104449272	3	3	232	1	0	0	0	0	1	0	0	0	6834	1696	59	5	2469	5	GRIN3A	9	104449272	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1860211	104449272	36764159	1432	16958										
CYLC2	0	genome.wustl.edu	37	chr9	105767465	105767465	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgaagatgaaaaaggaggTgcaaagaaagataacaaaaa	10	3	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	105767465	105767465	T	G	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	silent	c.552	p.G184	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	411	0	0	287	57	16.52	-	-	-	G	105767465	T	G	105767465	2	3	232	1	0	0	0	0	0	0	0	1	4173	1683	59	5		5	CYLC2	9	105767465	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1318193	105767465	35445966	1433	16959										
CYLC2	0	genome.wustl.edu	37	chr9	105767537	105767537	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcggcaacagaatctgaaggTgaaaaaggaggtacagagaa	13	5	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	105767537	105767537	T	G	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	silent	c.624	p.G208	0.005	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	503	3	0.59	389	81	17.2	-	-	-	G	105767537	T	G	105767537	2	3	232	1	0	0	0	0	0	0	0	1	4173	1683	59	5		5	CYLC2	9	105767537	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	72	105767537	35445894	1434	16960										
OR13C8	0	genome.wustl.edu	37	chr9	107331609	107331609	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttatcatctttgattctcAcctgcacacccccatgtatt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	107331609	107331609	A	C	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.161	p.H54P	0.977	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	406	1	0.25	298	51	14.49	-	-	-	C	107331609	A	C	107331609	3	2	232	1	0	0	0	0	1	0	0	0	11011	159	6	5	163	5	OR13C8	9	107331609	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1564072	107331609	33881822	1435	16961	178	2								
OR13C8	0	genome.wustl.edu	37	chr9	107331617	107331617	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctttgattctcacctgcacAcccccatgtatttcttcctc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	107331617	107331617	A	C	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.169	p.T57P	0.978	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	405	1	0.25	302	58	16.07	-	-	-	C	107331617	A	C	107331617	3	2	232	1	0	0	0	0	1	0	0	0	11011	159	6	5	171	5	OR13C8	9	107331617	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8	107331617	33881814	1436	16962	178	2								
ABCA1	0	genome.wustl.edu	37	chr9	107558363	107558363	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacagctccagcacaaaggTggccacgctgccattaatgc	10	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	107558363	107558363	T	G	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.5353	p.T1785P	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	264	0	0	239	32	11.72	-	-	-	G	107558363	T	G	107558363	3	3	232	1	0	0	0	0	1	0	0	0	28	1696	59	5	1480	5	ABCA1	9	107558363	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	226746	107558363	33655068	1437	16963										
ABCA1	0	genome.wustl.edu	37	chr9	107588012	107588012	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcaccccatagaggaaggTgtcaaacagcatcatggaga	10	10	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	107588012	107588012	T	G	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.2494	p.T832P	0.324	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	198	1	0.5	137	20	12.66	-	-	-	G	107588012	T	G	107588012	3	3	232	1	0	0	0	0	1	0	0	0	28	1696	59	5	4427	5	ABCA1	9	107588012	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	29649	107588012	33625419	1438	16964										
RAD23B	0	genome.wustl.edu	37	chr9	110068789	110068789	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtccctgccttggcccccActtccacacctgcatccatc	5	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	110068789	110068789	A	C	SNP	RAD23B	ENST00000358015	human	ensembl	69_37n	1	known	missense	c.358	p.T120P	0.011	tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318	281	2	0.71	189	43	18.45	-	-	-	C	110068789	A	C	110068789	3	2	232	1	0	0	0	0	1	0	0	0	13066	159	6	5	372	5	RAD23B	9	110068789	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2480777	110068789	31144642	1439	16965										
IKBKAP	0	genome.wustl.edu	37	chr9	111662598	111662598	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatccgtgaacccctctccActttccgcagaacttcccca	4	19	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	111662598	111662598	A	C	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.2072	p.V691G	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	285	0	0	170	33	16.18	-	-	-	C	111662598	A	C	111662598	3	2	232	1	0	0	0	0	1	0	0	0	7664	159	6	5	2002	5	IKBKAP	9	111662598	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1593809	111662598	29550833	1440	16966										
IKBKAP	0	genome.wustl.edu	37	chr9	111663934	111663934	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcattgatgaaaaagcgacAcctgtcagtcagaccaagga	10	9	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	111663934	111663934	A	C	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.1882	p.C628G	0.994	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	319	1	0.31	236	33	12.27	-	-	-	C	111663934	A	C	111663934	3	2	232	1	0	0	0	0	1	0	0	0	7664	159	6	5	2200	5	IKBKAP	9	111663934	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1336	111663934	29549497	1441	16967										
EPB41L4B	0	genome.wustl.edu	37	chr9	111966008	111966008	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacggtgattcctcctttccAccctgttaaagaaagcattc	6	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	111966008	111966008	A	C	SNP	EPB41L4B	ENST00000374566	human	ensembl	69_37n	-1	known	silent	c.1881	p.G627	0.999	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4B	HGNC	ENSG00000095203	235	0	0	221	26	10.48	-	-	-	C	111966008	A	C	111966008	2	2	232	1	0	0	0	0	0	0	0	1	5193	146	6	5		5	EPB41L4B	9	111966008	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	302074	111966008	29247423	1442	16968										
PTPN3	0	genome.wustl.edu	37	chr9	112185103	112185103	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacaccatcccgccaatcAcctttttgcaatattggtta	4	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	112185103	112185103	A	C	SNP	PTPN3	ENST00000374541	human	ensembl	69_37n	-1	known	missense	c.1031	p.V344G	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN3	HGNC	ENSG00000070159	198	0	0	201	27	11.79	-	-	-	C	112185103	A	C	112185103	3	2	232	1	0	0	0	0	1	0	0	0	12872	159	6	5	1766	5	PTPN3	9	112185103	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	219095	112185103	29028328	1443	16969										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112694277	112694277	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacgaacagcagaaccatcAcctgggcaggacgggaccag	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	112694277	112694277	A	C	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	silent	c.465	p.S155	0.978	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	151	0	0	109	26	18.71	-	-	-	C	112694277	A	C	112694277	2	2	232	1	0	0	0	0	0	0	0	1	11483	146	6	5		5	PALM2-AKAP2	9	112694277	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	509174	112694277	28519154	1444	16970										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112898610	112898610	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catccctccgctttctattcAcccccgcataatggcctcct	4	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	112898610	112898610	A	C	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	silent	c.786	p.S262	0.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	233	1	0.43	230	51	18.09	-	-	-	C	112898610	A	C	112898610	2	2	232	1	0	0	0	0	0	0	0	1	11483	146	6	5		5	PALM2-AKAP2	9	112898610	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	204333	112898610	28314821	1445	16971										
C9orf152	0	genome.wustl.edu	37	chr9	112963655	112963655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctccagcctcccctccAcctcagaatctgcctcttcc	3	23	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	112963655	112963655	A	C	SNP	C9orf152	ENST00000400613	human	ensembl	69_37n	-1	known	missense	c.293	p.V98G	0.000	NULL	NULL	-	no_errors	C9orf152	HGNC	ENSG00000188959	159	1	0.62	139	19	12.03	-	-	-	C	112963655	A	C	112963655	3	2	232	1	0	0	0	0	1	0	0	0	2488	159	6	5	430	5	C9orf152	9	112963655	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	65045	112963655	28249776	1446	16972										
SVEP1	0	genome.wustl.edu	37	chr9	113169375	113169375	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccattggctgagactgggggTgaactgcagtccacaggaat	14	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113169375	113169375	T	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.8505	p.S2835	0.983	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	128	0	0	114	28	19.58	-	-	-	G	113169375	T	G	113169375	2	3	232	1	0	0	0	0	0	0	0	1	15511	1683	59	5		5	SVEP1	9	113169375	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	205720	113169375	28044056	1447	16973										
SVEP1	0	genome.wustl.edu	37	chr9	113194755	113194755	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctcaccaaggcaggatggTgaaacgccgttccagctccc	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113194755	113194755	T	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.5220	p.S1740	0.970	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	241	0	0	169	27	13.64	-	-	-	G	113194755	T	G	113194755	2	3	232	1	0	0	0	0	0	0	0	1	15511	1683	59	5		5	SVEP1	9	113194755	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	25380	113194755	28018676	1448	16974										
SVEP1	0	genome.wustl.edu	37	chr9	113312207	113312207	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagtgctcctcctttggggTggaagccatgtcattcagct	11	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113312207	113312207	T	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.709	p.T237P	0.119	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	130	0	0	100	18	14.88	-	-	-	G	113312207	T	G	113312207	3	3	232	1	0	0	0	0	1	0	0	0	15511	1696	59	5	10194	5	SVEP1	9	113312207	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	117452	113312207	27901224	1449	16975										
MUSK	0	genome.wustl.edu	37	chr9	113509990	113509990	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagactgcagctgtttatcAccaagccaggactctacaca	7	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113509990	113509990	A	C	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.823	p.T275P	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	349	2	0.57	280	43	13.27	-	-	-	C	113509990	A	C	113509990	3	2	232	1	0	0	0	0	1	0	0	0	10061	159	6	5	883	5	MUSK	9	113509990	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	197783	113509990	27703441	1450	16976										
MUSK	0	genome.wustl.edu	37	chr9	113530150	113530150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcccagtacagaggggaggTgtgtaatgcagtcctggcaa	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113530150	113530150	T	G	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.989	p.V330G	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	244	0	0	191	32	14.35	-	-	-	G	113530150	T	G	113530150	3	3	232	1	0	0	0	0	1	0	0	0	10061	1696	59	5	1035	5	MUSK	9	113530150	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	20160	113530150	27683281	1451	16977										
MUSK	0	genome.wustl.edu	37	chr9	113538211	113538211	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcccagcatgcattgggAccccacggcctgtgccagac	11	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113538211	113538211	A	C	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.1346	p.D449A	1.000	pfam_Frizzled_dom,pfscan_Frizzled_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	262	2	0.76	153	24	13.56	-	-	-	C	113538211	A	C	113538211	3	2	232	1	0	0	0	0	1	0	0	0	10061	275	10	5	1398	5	MUSK	9	113538211	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8061	113538211	27675220	1452	16978										
MUSK	0	genome.wustl.edu	37	chr9	113562968	113562968	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccctatccgttggatgccAccagagtccattttttataa	6	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	113562968	113562968	A	C	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	silent	c.2328	p.P776	0.059	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	256	0	0	156	28	15.22	-	-	-	C	113562968	A	C	113562968	2	2	232	1	0	0	0	0	0	0	0	1	10061	146	6	5		5	MUSK	9	113562968	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24757	113562968	27650463	1453	16979										
KIAA0368	0	genome.wustl.edu	37	chr9	114159317	114159317	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatatttggtaccagcaggTggagtatattcctcttcagt	10	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	114159317	114159317	T	G	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	silent	c.3303	p.P1101	0.950	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	146	1	0.68	86	22	20.18	-	-	-	G	114159317	T	G	114159317	2	3	232	1	0	0	0	0	0	0	0	1	8223	1683	59	5		5	KIAA0368	9	114159317	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	596349	114159317	27054114	1454	16980										
KIAA0368	0	genome.wustl.edu	37	chr9	114173368	114173368	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattttctttttagccaaatAccttcccaccgtgaatccca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	114173368	114173368	A	C	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.2803	p.Y935D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	497	2	0.4	363	62	14.49	-	-	-	C	114173368	A	C	114173368	3	2	232	1	0	0	0	0	1	0	0	0	8223	391	14	5	3366	5	KIAA0368	9	114173368	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14051	114173368	27040063	1455	16981	179	2								
KIAA0368	0	genome.wustl.edu	37	chr9	114173376	114173376	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttagccaaataccttcccAccgtgaatcccaatgcaagc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	114173376	114173376	A	C	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.2795	p.V932G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	502	0	0	380	45	10.56	-	-	-	C	114173376	A	C	114173376	3	2	232	1	0	0	0	0	1	0	0	0	8223	159	6	5	3374	5	KIAA0368	9	114173376	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8	114173376	27040055	1456	16982	179	2								
PTGR1	0	genome.wustl.edu	37	chr9	114345824	114345824	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaaccatcactgtttctccAcccttcacaccacagatttc	2	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	114345824	114345824	A	C	SNP	PTGR1	ENST00000309195	human	ensembl	69_37n	-1	known	silent	c.423	p.G141	0.940	superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853	351	1	0.28	282	54	16.07	-	-	-	C	114345824	A	C	114345824	2	2	232	1	0	0	0	0	0	0	0	1	12834	146	6	5		5	PTGR1	9	114345824	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	172448	114345824	26867607	1457	16983										
C9orf84	0	genome.wustl.edu	37	chr9	114454525	114454525	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgattgtatgaagtcacaggTggtaaaaaacttgagatttc	10	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	114454525	114454525	T	G	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	silent	c.3540	p.P1180	0.006	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	132	0	0	80	14	14.74	-	-	-	G	114454525	T	G	114454525	2	3	232	1	0	0	0	0	0	0	0	1	2525	1683	59	5		5	C9orf84	9	114454525	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	108701	114454525	26758906	1458	16984										
C9orf43	0	genome.wustl.edu	37	chr9	116186588	116186588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctatctatacaccgcctcAccctggaagtaagagctagg	8	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	116186588	116186588	A	C	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	missense	c.799	p.T267P	1.000	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	206	1	0.48	186	38	16.96	-	-	-	C	116186588	A	C	116186588	3	2	232	1	0	0	0	0	1	0	0	0	2508	159	6	5	825	5	C9orf43	9	116186588	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1732063	116186588	25026843	1459	16985										
TNC	0	genome.wustl.edu	37	chr9	117826954	117826954	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctcagcagagagcactggTgttctatagccctggatcac	11	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	117826954	117826954	T	G	SNP	TNC	ENST00000544972	human	ensembl	69_37n	-1	novel	missense	c.238	p.T80P	0.977	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNC	HGNC	ENSG00000041982	327	1	0.3	265	33	11.07	-	-	-	G	117826954	T	G	117826954	3	3	232	1	0	0	0	0	1	0	0	0	16365	1683	59	5	3218	5	TNC	9	117826954	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1640366	117826954	23386477	1460	16986										
PAPPA	0	genome.wustl.edu	37	chr9	118974154	118974154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccagggccaggaaatgacAcctgtggctttcatagcttc	10	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	118974154	118974154	A	C	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.1861	p.T621P	1.000	pfam_Peptidase_M43	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	462	2	0.43	317	49	13.24	-	-	-	C	118974154	A	C	118974154	3	2	232	1	0	0	0	0	1	0	0	0	11505	159	6	5	1875	5	PAPPA	9	118974154	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1147200	118974154	22239277	1461	16987										
ASTN2	0	genome.wustl.edu	37	chr9	119188359	119188359	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcgccgtagaatcaggTgggccttcctgaaaggtagg	14	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	119188359	119188359	T	G	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.3791	p.H1264P	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	42	0	0	30	4	11.76	-	-	-	G	119188359	T	G	119188359	3	3	232	1	0	0	0	0	1	0	0	0	1069	1696	59	5	273	5	ASTN2	9	119188359	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	214205	119188359	22025072	1462	16988										
ASTN2	0	genome.wustl.edu	37	chr9	119380731	119380731	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacagtactggagggctccActgttggggacagccgcagc	14	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	119380731	119380731	A	C	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.3227	p.V1076G	0.998	superfamily_Fibronectin_type3	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	230	0	0	212	31	12.76	-	-	-	C	119380731	A	C	119380731	3	2	232	1	0	0	0	0	1	0	0	0	1069	159	6	5	931	5	ASTN2	9	119380731	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	192372	119380731	21832700	1463	16989										
PHF19	0	genome.wustl.edu	37	chr9	123624964	123624964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcttccctggcgggttgggTgggacgcggatgcgcaggcg	20	10	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	123624964	123624964	T	G	SNP	PHF19	ENST00000373896	human	ensembl	69_37n	-1	known	silent	c.1032	p.P344	0.635	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	129	0	0	94	19	16.81	-	-	-	G	123624964	T	G	123624964	2	3	232	1	0	0	0	0	0	0	0	1	11903	1683	59	5		5	PHF19	9	123624964	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4244233	123624964	17588467	1464	16990										
PHF19	0	genome.wustl.edu	37	chr9	123628106	123628106	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggccaggtgaaccacatccAccctgggcaagggggcaagg	16	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	123628106	123628106	A	C	SNP	PHF19	ENST00000373896	human	ensembl	69_37n	-1	known	missense	c.782	p.V261G	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	86	0	0	52	20	27.78	-	-	-	C	123628106	A	C	123628106	3	2	232	1	0	0	0	0	1	0	0	0	11903	159	6	5	988	5	PHF19	9	123628106	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3142	123628106	17585325	1465	16991										
GSN	0	genome.wustl.edu	37	chr9	124065345	124065345	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtctggcctgaagtacaaggTgggttgggccccaccttgct	14	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	124065345	124065345	T	G	SNP	GSN	ENST00000373818	human	ensembl	69_37n	1	known	splice_site	c.504+2	e3+2	1.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	32	0	0	17	5	22.73	-	-	-	G	124065345	T	G	124065345	5	3	232	1	0	0	0	0	0	0	1	0	6876	1710	59	5	544	5	GSN	9	124065345	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	437239	124065345	17148086	1466	16992										
DAB2IP	0	genome.wustl.edu	37	chr9	124544715	124544715	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgtaacggcatctcccccAccaaccccaccaaattgcag	5	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	124544715	124544715	A	C	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.3508	p.T1170P	1.000	NULL	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	199	2	0.99	125	19	13.19	-	-	-	C	124544715	A	C	124544715	3	2	232	1	0	0	0	0	1	0	0	0	4251	159	6	5	3486	5	DAB2IP	9	124544715	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	479370	124544715	16668716	1467	16993										
TTLL11	0	genome.wustl.edu	37	chr9	124752039	124752039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaggggtcatcgtctttcAccatttgaacctggaggggg	15	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	124752039	124752039	A	C	SNP	TTLL11	ENST00000321582	human	ensembl	69_37n	-1	known	missense	c.974	p.V325G	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL11	HGNC	ENSG00000175764	202	1	0.49	126	23	15.33	-	-	-	C	124752039	A	C	124752039	3	2	232	1	0	0	0	0	1	0	0	0	16821	159	6	5	1530	5	TTLL11	9	124752039	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	207324	124752039	16461392	1468	16994										
PTGS1	0	genome.wustl.edu	37	chr9	125140813	125140813	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgggagtttgtcaatgccAccttcatccgagagatgctc	10	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125140813	125140813	A	C	SNP	PTGS1	ENST00000362012	human	ensembl	69_37n	1	known	missense	c.313	p.T105P	1.000	superfamily_Haem_peroxidase	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	131	1	0.76	91	21	18.58	-	-	-	C	125140813	A	C	125140813	3	2	232	1	0	0	0	0	1	0	0	0	12836	159	6	5	327	5	PTGS1	9	125140813	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	388774	125140813	16072618	1469	16995										
OR1J4	0	genome.wustl.edu	37	chr9	125281936	125281936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtccttttgtgctgacaacAccatcccccatttcttctgt	5	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125281936	125281936	A	C	SNP	OR1J4	ENST00000340750	human	ensembl	69_37n	1	known	missense	c.517	p.T173P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J4	HGNC	ENSG00000239590	207	1	0.48	178	30	14.35	-	-	-	C	125281936	A	C	125281936	3	2	232	1	0	0	0	0	1	0	0	0	11034	159	6	5	519	5	OR1J4	9	125281936	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	141123	125281936	15931495	1470	16996										
OR1B1	0	genome.wustl.edu	37	chr9	125391705	125391705	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccccagtatggtggtcaggTaaatagccaggaacaggaag	13	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125391705	125391705	T	G	SNP	OR1B1	ENST00000304833	human	ensembl	69_37n	-1	novel	missense	c.110	p.Y37S	0.996	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1B1	HGNC	ENSG00000171484	181	0	0	204	30	12.82	-	-	-	G	125391705	T	G	125391705	3	3	232	1	0	0	0	0	1	0	0	0	11024	1638	57	5	849	5	OR1B1	9	125391705	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	109769	125391705	15821726	1471	16997										
OR1L3	0	genome.wustl.edu	37	chr9	125437907	125437907	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctcctggtgaatcggctcAccttttgtacatcaaatgtt	7	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125437907	125437907	A	C	SNP	OR1L3	ENST00000304820	human	ensembl	69_37n	1	known	missense	c.499	p.T167P	0.035	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481	710	1	0.14	498	60	10.71	-	-	-	C	125437907	A	C	125437907	3	2	232	1	0	0	0	0	1	0	0	0	11037	159	6	5	501	5	OR1L3	9	125437907	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46202	125437907	15775524	1472	16998										
OR1L6	0	genome.wustl.edu	37	chr9	125512860	125512860	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctctacctgtggctcccAcctcactgcagtagcccttt	6	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125512860	125512860	A	C	SNP	OR1L6	ENST00000373684	human	ensembl	69_37n	1	known	missense	c.842	p.H281P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	243	1	0.41	231	55	19.16	-	-	-	C	125512860	A	C	125512860	3	2	232	1	0	0	0	0	1	0	0	0	11039	159	6	5	736	5	OR1L6	9	125512860	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	74953	125512860	15700571	1473	16999										
OR5C1	0	genome.wustl.edu	37	chr9	125551610	125551610	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacgtggccatcagaaacccActtctctatacaacagctat	5	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125551610	125551610	A	C	SNP	OR5C1	ENST00000373680	human	ensembl	69_37n	1	known	silent	c.399	p.P133	0.315	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215	161	0	0	167	23	11.98	-	-	-	C	125551610	A	C	125551610	2	2	232	1	0	0	0	0	0	0	0	1	11226	146	6	5		5	OR5C1	9	125551610	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38750	125551610	15661821	1474	17000										
RABGAP1	0	genome.wustl.edu	37	chr9	125752412	125752412	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactttcagccactgctgcAccccagactcctgacagtga	7	17	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125752412	125752412	A	C	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	silent	c.843	p.A281	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	135	0	0	76	23	23.23	-	-	-	C	125752412	A	C	125752412	2	2	232	1	0	0	0	0	0	0	0	1	13047	146	6	5		5	RABGAP1	9	125752412	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	200802	125752412	15461019	1475	17001										
GPR21	0	genome.wustl.edu	37	chr9	125797419	125797419	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcacaccgactcctacttcAccctgttcatcgtgatgatg	8	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	125797419	125797419	A	C	SNP	GPR21	ENST00000373642	human	ensembl	69_37n	1	known	missense	c.574	p.T192P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR21	HGNC	ENSG00000188394	222	0	0	152	28	15.38	-	-	-	C	125797419	A	C	125797419	3	2	232	1	0	0	0	0	1	0	0	0	6731	159	6	5	576	5	GPR21	9	125797419	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	45007	125797419	15416012	1476	17002										
GARNL3	0	genome.wustl.edu	37	chr9	130117695	130117695	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccaagcggggtcaccagcAcctcattgttatctcccctg	9	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130117695	130117695	A	C	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.1879	p.T627P	0.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	370	1	0.27	324	39	10.71	-	-	-	C	130117695	A	C	130117695	3	2	232	1	0	0	0	0	1	0	0	0	6291	159	6	5	1957	5	GARNL3	9	130117695	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4320276	130117695	11095736	1477	17003										
RPL12	0	genome.wustl.edu	37	chr9	130210055	130210055	+	RNA	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtttaaaaggattatcccAccccaccagtaaccatttcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130210055	130210055	A	C	SNP	RPL12	ENST00000497322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL12	HGNC	ENSG00000197958	344	2	0.58	224	62	21.68	-	-	-	C	130210055	A	C	130210055	1	2	232	0	1	0	0	0	0	0	0	0	13644	174	6	5		5	RPL12	9	130210055	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	92360	130210055	11003376	1478	17004	180	2								
RPL12	0	genome.wustl.edu	37	chr9	130210060	130210060	+	RNA	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taaaaggattatcccaccccAccagtaaccatttccaaaac							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130210060	130210060	A	C	SNP	RPL12	ENST00000497322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL12	HGNC	ENSG00000197958	344	2	0.58	237	51	17.71	-	-	-	C	130210060	A	C	130210060	1	2	232	0	1	0	0	0	0	0	0	0	13644	174	6	5		5	RPL12	9	130210060	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5	130210060	11003371	1479	17005	180	2								
RPL12	0	genome.wustl.edu	37	chr9	130210124	130210124	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactgggtggcccccctttcAcccctactgtaacaatgaaa	7	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130210124	130210124	A	C	SNP	RPL12	ENST00000497322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL12	HGNC	ENSG00000197958	222	0	0	161	20	11.05	-	-	-	C	130210124	A	C	130210124	1	2	232	0	1	0	0	0	0	0	0	0	13644	174	6	5		5	RPL12	9	130210124	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	64	130210124	11003307	1480	17006										
FPGS	0	genome.wustl.edu	37	chr9	130566833	130566833	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactgggacgaaggggaaggTgaggggcaggaccctggggt	21	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130566833	130566833	T	G	SNP	FPGS	ENST00000373247	human	ensembl	69_37n	1	known	splice_site	c.321+2	e3+2	1.000	-	-	-	no_errors	FPGS	HGNC	ENSG00000136877	30	0	0	28	5	15.15	-	-	-	G	130566833	T	G	130566833	5	3	232	1	0	0	0	0	0	0	1	0	6084	1710	59	5	333	5	FPGS	9	130566833	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	356709	130566833	10646598	1481	17007										
PIP5KL1	0	genome.wustl.edu	37	chr9	130687562	130687562	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccggagcatcagtgcccccAcctgagcgctcatcatgtgc	11	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130687562	130687562	A	C	SNP	PIP5KL1	ENST00000497234	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIP5KL1	HGNC	ENSG00000167103	22	0	0	10	13	56.52	-	-	-	C	130687562	A	C	130687562	1	2	232	0	1	0	0	0	0	0	0	0	12016	174	6	5		5	PIP5KL1	9	130687562	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	120729	130687562	10525869	1482	17008										
CIZ1	0	genome.wustl.edu	37	chr9	130940956	130940956	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggcagagctgtcccatcAccagaccagctgggagccag	13	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	130940956	130940956	A	C	SNP	CIZ1	ENST00000475471	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CIZ1	HGNC	ENSG00000148337	56	0	0	36	6	14.29	-	-	-	C	130940956	A	C	130940956	1	2	232	0	1	0	0	0	0	0	0	0	3471	174	6	5		5	CIZ1	9	130940956	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	253394	130940956	10272475	1483	17009										
LRRC8A	0	genome.wustl.edu	37	chr9	131669696	131669696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcccacctaccccaactccAccattctgccgacccctgac	4	22	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	131669696	131669696	A	C	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	missense	c.253	p.T85P	0.998	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	39	0	0	26	4	13.33	-	-	-	C	131669696	A	C	131669696	3	2	232	1	0	0	0	0	1	0	0	0	9087	159	6	5	255	5	LRRC8A	9	131669696	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	728740	131669696	9543735	1484	17010										
NUP214	0	genome.wustl.edu	37	chr9	134019777	134019777	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacctgctgctcccattgccActttttctttgcttcctgct	5	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	134019777	134019777	A	C	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.1405	p.T469P	0.477	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	810	6	0.73	656	132	16.6	-	-	-	C	134019777	A	C	134019777	3	2	232	1	0	0	0	0	1	0	0	0	10835	159	6	5	1451	5	NUP214	9	134019777	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2350081	134019777	7193654	1485	17011										
NUP214	0	genome.wustl.edu	37	chr9	134021645	134021645	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccacacctctctcagcaccAcctagttccgtgccattgaa	5	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	134021645	134021645	A	C	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	silent	c.1899	p.P633	0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	559	2	0.36	412	69	14.26	-	-	-	C	134021645	A	C	134021645	2	2	232	1	0	0	0	0	0	0	0	1	10835	146	6	5		5	NUP214	9	134021645	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1868	134021645	7191786	1486	17012										
POMT1	0	genome.wustl.edu	37	chr9	134386764	134386764	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagggtcagccactggaggTggcctttgggtcccaggtca	15	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	134386764	134386764	T	G	SNP	POMT1	ENST00000372228	human	ensembl	69_37n	1	known	missense	c.962	p.V321G	1.000	superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714	112	1	0.88	110	23	17.29	-	-	-	G	134386764	T	G	134386764	3	3	232	1	0	0	0	0	1	0	0	0	12319	1696	59	5	996	5	POMT1	9	134386764	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	365119	134386764	6826667	1487	17013										
TTF1	0	genome.wustl.edu	37	chr9	135266116	135266116	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcttggagtttggaatccAcctcttttaactcctgggga	9	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	135266116	135266116	A	C	SNP	TTF1	ENST00000334270	human	ensembl	69_37n	-1	known	missense	c.2090	p.V697G	0.030	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482	221	0	0	126	25	16.45	-	-	-	C	135266116	A	C	135266116	3	2	232	1	0	0	0	0	1	0	0	0	16815	159	6	5	647	5	TTF1	9	135266116	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	879352	135266116	5947315	1488	17014										
TTF1	0	genome.wustl.edu	37	chr9	135277313	135277313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccccaacctcactgcccActtgtgatccttcaggcatg	7	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	9	135277313	135277313	A	C	SNP	TTF1	ENST00000334270	human	ensembl	69_37n	-1	known	missense	c.896	p.V299G	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482	404	2	0.49	421	50	10.57	-	-	-	C	135277313	A	C	135277313	3	2	232	1	0	0	0	0	1	0	0	0	16815	159	6	5	1861	5	TTF1	9	135277313	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11197	135277313	5936118	1489	17015										
SFMBT2	0	genome.wustl.edu	37	chr10	7325873	7325873	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttggcccttacctgaaggTgggtccattctgtatttatt	9	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	7325873	7325873	T	G	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	silent	c.765	p.P255	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	211	0	0	203	37	15.29	-	-	-	G	7325873	T	G	7325873	2	3	232	1	0	0	0	0	0	0	0	1	14246	1683	59	5		5	SFMBT2	10	7325873	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		7325873	128208874	1490	17016										
TAF3	0	genome.wustl.edu	37	chr10	7866501	7866501	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacattcctgattacctgccAcccattgtgtcttctcaaga	5	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	7866501	7866501	A	C	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	silent	c.387	p.P129	0.997	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	228	0	0	184	28	13.08	-	-	-	C	7866501	A	C	7866501	2	2	232	1	0	0	0	0	0	0	0	1	15617	146	6	5		5	TAF3	10	7866501	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	540628	7866501	127668246	1491	17017										
UPF2	0	genome.wustl.edu	37	chr10	12077331	12077331	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggcctctccttgctgctcActgtccgcctttcactgcag	8	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	12077331	12077331	A	C	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	missense	c.92	p.V31G	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	317	1	0.31	289	33	10.22	-	-	-	C	12077331	A	C	12077331	3	2	232	1	0	0	0	0	1	0	0	0	17101	159	6	5	3810	5	UPF2	10	12077331	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4210830	12077331	123457416	1492	17018										
DHTKD1	0	genome.wustl.edu	37	chr10	12142222	12142222	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatcaagctagactgggccAccgcggaagctcttgccttg	12	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	12142222	12142222	A	C	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	missense	c.1717	p.T573P	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	144	0	0	127	17	11.72	-	-	-	C	12142222	A	C	12142222	3	2	232	1	0	0	0	0	1	0	0	0	4536	159	6	5	1751	5	DHTKD1	10	12142222	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	64891	12142222	123392525	1493	17019										
SEC61A2	0	genome.wustl.edu	37	chr10	12197867	12197867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatttccctctttattgccAccaacatctgtgagaccatt	6	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	12197867	12197867	A	C	SNP	SEC61A2	ENST00000298428	human	ensembl	69_37n	1	known	missense	c.553	p.T185P	1.000	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A2	HGNC	ENSG00000065665	324	2	0.61	361	66	15.46	-	-	-	C	12197867	A	C	12197867	3	2	232	1	0	0	0	0	1	0	0	0	14089	159	6	5	579	5	SEC61A2	10	12197867	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55645	12197867	123336880	1494	17020										
FAM171A1	0	genome.wustl.edu	37	chr10	15262969	15262969	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggaggggacatggcggccAcccagtaccccaactggggg	17	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	15262969	15262969	A	C	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.845	p.V282G	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	86	0	0	61	19	23.75	-	-	-	C	15262969	A	C	15262969	3	2	232	1	0	0	0	0	1	0	0	0	5530	159	6	5	1839	5	FAM171A1	10	15262969	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3065102	15262969	120271778	1495	17021										
TRDMT1	0	genome.wustl.edu	37	chr10	17201166	17201166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaccaggggcttgaaagggTaatggctctgactgaagctt	14	7	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	17201166	17201166	T	G	SNP	TRDMT1	ENST00000377799	human	ensembl	69_37n	-1	known	missense	c.522	p.L174F	0.006	pfam_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614	130	0	0	73	16	17.98	-	-	-	G	17201166	T	G	17201166	3	3	232	1	0	0	0	0	1	0	0	0	16563	1635	57	5	673	5	TRDMT1	10	17201166	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1938197	17201166	118333581	1496	17022										
PLXDC2	0	genome.wustl.edu	37	chr10	20506433	20506433	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaccgtaggagcgacaaccAcccagttcagggtcctaact	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	20506433	20506433	A	C	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	missense	c.1201	p.T401P	0.702	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	214	1	0.46	211	37	14.92	-	-	-	C	20506433	A	C	20506433	3	2	232	1	0	0	0	0	1	0	0	0	12192	159	6	5	1243	5	PLXDC2	10	20506433	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3305267	20506433	115028314	1497	17023										
PIP4K2A	0	genome.wustl.edu	37	chr10	22830840	22830840	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctatctgggggggttcccAccgggtgggtgccatcgctc	17	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	22830840	22830840	A	C	SNP	PIP4K2A	ENST00000376573	human	ensembl	69_37n	-1	known	missense	c.929	p.V310G	0.130	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867	121	1	0.81	95	21	18.1	-	-	-	C	22830840	A	C	22830840	3	2	232	1	0	0	0	0	1	0	0	0	12010	159	6	5	303	5	PIP4K2A	10	22830840	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2324407	22830840	112703907	1498	17024										
KIAA1217	0	genome.wustl.edu	37	chr10	24834959	24834959	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagcccccaaacaggaccAcctgctcactctgcctccct	5	21	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	24834959	24834959	A	C	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.5538	p.P1846	0.012	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	335	3	0.89	310	80	20.51	-	-	-	C	24834959	A	C	24834959	2	2	232	1	0	0	0	0	0	0	0	1	8268	146	6	5		5	KIAA1217	10	24834959	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2004119	24834959	110699788	1499	17025										
ARHGAP21	0	genome.wustl.edu	37	chr10	24909207	24909207	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctaggtctttcacaaatAcctcgtctatcatcctgttc	5	13	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	24909207	24909207	A	C	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	silent	c.1617	p.G539	0.111	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	303	1	0.33	264	35	11.67	-	-	-	C	24909207	A	C	24909207	2	2	232	1	0	0	0	0	0	0	0	1	873	378	14	5		5	ARHGAP21	10	24909207	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	74248	24909207	110625540	1500	17026										
MYO3A	0	genome.wustl.edu	37	chr10	26312957	26312957	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttatttttctaggaatccAcccccaaaactaaggcagcc	5	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	26312957	26312957	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.738	p.P246	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	260	0	0	199	34	14.53	-	-	-	C	26312957	A	C	26312957	2	2	232	1	0	0	0	0	0	0	0	1	10148	146	6	5		5	MYO3A	10	26312957	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1403750	26312957	109221790	1501	17027										
MYO3A	0	genome.wustl.edu	37	chr10	26455048	26455048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccccgcatgagccctgacAcctgtgccaccattttggaa	9	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	26455048	26455048	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.3052	p.T1018P	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	485	2	0.41	477	70	12.75	-	-	-	C	26455048	A	C	26455048	3	2	232	1	0	0	0	0	1	0	0	0	10148	159	6	5	3150	5	MYO3A	10	26455048	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	142091	26455048	109079699	1502	17028										
SVIL	0	genome.wustl.edu	37	chr10	29819585	29819585	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcttggctcgttcatccAccttttcttcatctgcaaaa	5	13	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	29819585	29819585	A	C	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.2057	p.V686G	0.994	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	125	0	0	145	27	15.61	-	-	-	C	29819585	A	C	29819585	3	2	232	1	0	0	0	0	1	0	0	0	15512	159	6	5	4699	5	SVIL	10	29819585	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3364537	29819585	105715162	1503	17029										
KIAA1462	0	genome.wustl.edu	37	chr10	30315897	30315897	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacccctctagctcactggcAccctgttcttgcccaggggt	10	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	30315897	30315897	A	C	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	silent	c.3180	p.G1060	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	205	0	0	200	31	13.36	-	-	-	C	30315897	A	C	30315897	2	2	232	1	0	0	0	0	0	0	0	1	8286	146	6	5		5	KIAA1462	10	30315897	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	496312	30315897	105218850	1504	17030										
KIAA1462	0	genome.wustl.edu	37	chr10	30318312	30318312	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatacggtggcattttaggTgaatgtctttcatttaatgg	12	4	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	30318312	30318312	T	G	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	silent	c.765	p.S255	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	166	0	0	110	21	16.03	-	-	-	G	30318312	T	G	30318312	2	3	232	1	0	0	0	0	0	0	0	1	8286	1683	59	5		5	KIAA1462	10	30318312	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2415	30318312	105216435	1505	17031										
ZEB1	0	genome.wustl.edu	37	chr10	31810831	31810831	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccctgcagtccaagaaccAcccttgaaagtgatccagcc	8	15	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	31810831	31810831	A	C	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	silent	c.2571	p.P857	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	215	1	0.46	156	26	14.21	-	-	-	C	31810831	A	C	31810831	2	2	232	1	0	0	0	0	0	0	0	1	17719	146	6	5		5	ZEB1	10	31810831	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1492519	31810831	103723916	1506	17032										
C10orf68	0	genome.wustl.edu	37	chr10	33134844	33134844	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagatgctattggaagaggTataataatagggccaatcac	11	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	33134844	33134844	T	G	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	silent	c.1482	p.G494	0.001	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	250	0	0	176	33	15.71	-	-	-	G	33134844	T	G	33134844	2	3	232	1	0	0	0	0	0	0	0	1	1623	1625	57	5		5	C10orf68	10	33134844	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1324013	33134844	102399903	1507	17033										
C10orf68	0	genome.wustl.edu	37	chr10	33140831	33140831	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcttttctaaagacatccAccttcctttactgaatcaac	3	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	33140831	33140831	A	C	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	missense	c.1913	p.H638P	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	361	0	0	265	43	13.92	-	-	-	C	33140831	A	C	33140831	3	2	232	1	0	0	0	0	1	0	0	0	1623	159	6	5	1791	5	C10orf68	10	33140831	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5987	33140831	102393916	1508	17034										
ITGB1	0	genome.wustl.edu	37	chr10	33212631	33212631	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccggcatctgtggaaaacAccagcagccgtgtaacattc	9	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	33212631	33212631	A	C	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	missense	c.824	p.V275G	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	92	0	0	62	22	26.19	-	-	-	C	33212631	A	C	33212631	3	2	232	1	0	0	0	0	1	0	0	0	7944	159	6	5	1850	5	ITGB1	10	33212631	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	71800	33212631	102322116	1509	17035										
NRP1	0	genome.wustl.edu	37	chr10	33502422	33502422	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttctctcggtgcttcccAccctgaatgatgatgcccct	8	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	33502422	33502422	A	C	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	silent	c.1506	p.G502	0.300	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	319	1	0.31	286	45	13.55	-	-	-	C	33502422	A	C	33502422	2	2	232	1	0	0	0	0	0	0	0	1	10733	146	6	5		5	NRP1	10	33502422	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	289791	33502422	102032325	1510	17036										
PARD3	0	genome.wustl.edu	37	chr10	34558596	34558596	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcgcctacctgtctacaggTgagggtttggaattccgcgg	15	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	34558596	34558596	T	G	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	silent	c.3417	p.S1139	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	142	0	0	108	17	13.49	-	-	-	G	34558596	T	G	34558596	2	3	232	1	0	0	0	0	0	0	0	1	11516	1683	59	5		5	PARD3	10	34558596	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1056174	34558596	100976151	1511	17037										
PARD3	0	genome.wustl.edu	37	chr10	34739273	34739273	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttctccagccacttgcccAccattgggtgactggcactc	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	34739273	34739273	A	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.686	p.V229G	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	148	1	0.67	104	20	16.13	-	-	-	C	34739273	A	C	34739273	3	2	232	1	0	0	0	0	1	0	0	0	11516	159	6	5	3503	5	PARD3	10	34739273	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	180677	34739273	100795474	1512	17038										
PARD3	0	genome.wustl.edu	37	chr10	34985325	34985325	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccatgttccaagcgatgcAcctgtatccagtagtttgga	9	11	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	34985325	34985325	A	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.143	p.V48G	1.000	pfam_DUF3534	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	545	0	0	592	91	13.3	-	-	-	C	34985325	A	C	34985325	3	2	232	1	0	0	0	0	1	0	0	0	11516	159	6	5	4058	5	PARD3	10	34985325	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	246052	34985325	100549422	1513	17039										
CCNY	0	genome.wustl.edu	37	chr10	35818948	35818948	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatttttgatgaaaatcttcAccctctttcggtaatctcct	4	10	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	35818948	35818948	A	C	SNP	CCNY	ENST00000374704	human	ensembl	69_37n	1	known	missense	c.449	p.H150P	1.000	superfamily_Cyclin-like,pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNY	HGNC	ENSG00000108100	281	0	0	214	35	14	-	-	-	C	35818948	A	C	35818948	3	2	232	1	0	0	0	0	1	0	0	0	2965	159	6	5	471	5	CCNY	10	35818948	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	833623	35818948	99715799	1514	17040										
CSGALNACT2	0	genome.wustl.edu	37	chr10	43678729	43678729	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggaagtgaaaggttggggTggagaagatgttcatcttta	15	2	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	43678729	43678729	T	G	SNP	CSGALNACT2	ENST00000374466	human	ensembl	69_37n	1	known	silent	c.1368	p.G456	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826	205	0	0	185	34	15.45	-	-	-	G	43678729	T	G	43678729	2	3	232	1	0	0	0	0	0	0	0	1	3971	1683	59	5		5	CSGALNACT2	10	43678729	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7859781	43678729	91856018	1515	17041										
FRMPD2	0	genome.wustl.edu	37	chr10	49389050	49389050	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgggttatttccaccaacAcctataaaaacaagccaaga	5	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	49389050	49389050	A	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	silent	c.2586	p.G862	0.773	superfamily_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	40	0	0	34	9	20.93	-	-	-	C	49389050	A	C	49389050	2	2	232	1	0	0	0	0	0	0	0	1	6107	173	6	5		5	FRMPD2	10	49389050	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5710321	49389050	86145697	1516	17042										
ERCC6	0	genome.wustl.edu	37	chr10	50667150	50667150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacgctctggcagaatcaggTggtttctagctctcatttta	9	9	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	50667150	50667150	T	G	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.4193	p.H1398P	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	219	0	0	191	24	11.11	-	-	-	G	50667150	T	G	50667150	3	3	232	1	0	0	0	0	1	0	0	0	5254	1696	59	5	292	5	ERCC6	10	50667150	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1278100	50667150	84867597	1517	17043										
MBL2	0	genome.wustl.edu	37	chr10	54527932	54527932	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagacggccagatgggaggTggagcaggggacgtcattcc	17	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	54527932	54527932	T	G	SNP	MBL2	ENST00000373968	human	ensembl	69_37n	-1	known	missense	c.712	p.T238P	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471	324	3	0.91	216	42	16.15	-	-	-	G	54527932	T	G	54527932	3	3	232	1	0	0	0	0	1	0	0	0	9421	1696	59	5	38	5	MBL2	10	54527932	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3860782	54527932	81006815	1518	17044										
PCDH15	0	genome.wustl.edu	37	chr10	55582766	55582766	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagctgactgactgactccAcagcctctgaatcttttctc	6	13	3	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	55582766	55582766	A	C	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.4720	p.W1574G	0.995	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	201	2	0.98	115	19	14.18	-	-	-	C	55582766	A	C	55582766	3	2	232	1	0	0	0	0	1	0	0	0	11584	159	6	5	2757	5	PCDH15	10	55582766	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1054834	55582766	79951981	1519	17045										
SLC16A9	0	genome.wustl.edu	37	chr10	61414049	61414049	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggctgtcttgtttccagtcAccattggctaacgtgatcct	9	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	61414049	61414049	A	C	SNP	SLC16A9	ENST00000395347	human	ensembl	69_37n	-1	known	silent	c.735	p.G245	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449	470	1	0.21	272	39	12.5	-	-	-	C	61414049	A	C	61414049	2	2	232	1	0	0	0	0	0	0	0	1	14504	146	6	5		5	SLC16A9	10	61414049	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5831283	61414049	74120698	1520	17046										
ANK3	0	genome.wustl.edu	37	chr10	61847992	61847992	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggtgctgctcagaattccAccttcaggaccaatctggtt	10	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	61847992	61847992	A	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	silent	c.3453	p.G1151	0.837	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	131	0	0	135	16	10.46	-	-	-	C	61847992	A	C	61847992	2	2	232	1	0	0	0	0	0	0	0	1	622	146	6	5		5	ANK3	10	61847992	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	433943	61847992	73686755	1521	17047										
ARID5B	0	genome.wustl.edu	37	chr10	63699970	63699970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattgctgtttccgaaaaggTgattgtgaagcttgaagacc	11	7	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	63699970	63699970	T	G	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.305	p.V102G	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	139	0	0	113	16	12.31	-	-	-	G	63699970	T	G	63699970	3	3	232	1	0	0	0	0	1	0	0	0	924	1696	59	5	315	5	ARID5B	10	63699970	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1851978	63699970	71834777	1522	17048										
ARID5B	0	genome.wustl.edu	37	chr10	63852666	63852666	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacacttggctgcggctacAcctgtaggaagttcatatgg	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	63852666	63852666	A	C	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	silent	c.3444	p.T1148	0.988	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	174	0	0	154	27	14.92	-	-	-	C	63852666	A	C	63852666	2	2	232	1	0	0	0	0	0	0	0	1	924	146	6	5		5	ARID5B	10	63852666	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	152696	63852666	71682081	1523	17049										
ZNF365	0	genome.wustl.edu	37	chr10	64159343	64159343	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgatctcaaggcccatttccAcccaaagggaaggaaccacc	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	64159343	64159343	A	C	SNP	ZNF365	ENST00000395254	human	ensembl	69_37n	1	known	missense	c.1019	p.H340P	0.969	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	307	2	0.65	301	43	12.43	-	-	-	C	64159343	A	C	64159343	3	2	232	1	0	0	0	0	1	0	0	0	17965	159	6	5	1033	5	ZNF365	10	64159343	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	306677	64159343	71375404	1524	17050										
ZNF365	0	genome.wustl.edu	37	chr10	64159361	64159361	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacccaaagggaaggaaccAcctgaaaaaggccaaggatg	11	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	64159361	64159361	A	C	SNP	ZNF365	ENST00000395254	human	ensembl	69_37n	1	known	missense	c.1037	p.H346P	0.053	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	294	1	0.34	258	51	16.45	-	-	-	C	64159361	A	C	64159361	3	2	232	1	0	0	0	0	1	0	0	0	17965	159	6	5	1051	5	ZNF365	10	64159361	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18	64159361	71375386	1525	17051										
ZNF365	0	genome.wustl.edu	37	chr10	64430000	64430000	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcgatttgttgactgaacAcctgttaggtgtaaggcacg	11	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	64430000	64430000	A	C	SNP	ZNF365	ENST00000410046	human	ensembl	69_37n	1	known	missense	c.1328	p.H443P	0.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	371	0	0	271	32	10.56	-	-	-	C	64430000	A	C	64430000	3	2	232	1	0	0	0	0	1	0	0	0	17965	159	6	5	2090	5	ZNF365	10	64430000	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	270639	64430000	71104747	1526	17052										
CTNNA3	0	genome.wustl.edu	37	chr10	69407208	69407208	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagtagcttctccacggTgaatgtttggacctgcagat	10	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	69407208	69407208	T	G	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	missense	c.64	p.T22P	0.994	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	163	1	0.61	90	29	24.17	-	-	-	G	69407208	T	G	69407208	3	3	232	1	0	0	0	0	1	0	0	0	4046	1696	59	5	2691	5	CTNNA3	10	69407208	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4977208	69407208	66127539	1527	17053										
HERC4	0	genome.wustl.edu	37	chr10	69714455	69714455	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaagaaaaattctttgcgcAcccctcctgcatccacagca	6	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	69714455	69714455	A	C	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	missense	c.2258	p.V753G	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	162	1	0.61	101	33	24.63	-	-	-	C	69714455	A	C	69714455	3	2	232	1	0	0	0	0	1	0	0	0	7111	159	6	5	943	5	HERC4	10	69714455	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	307247	69714455	65820292	1528	17054										
HERC4	0	genome.wustl.edu	37	chr10	69785428	69785428	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctccaaaagtaaacactccAccttcctaaaaaaagacaaa	3	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	69785428	69785428	A	C	SNP	HERC4	ENST00000427635	human	ensembl	69_37n	-1	known	missense	c.772	p.W258G	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HERC4	HGNC	ENSG00000148634	234	0	0	195	28	12.44	-	-	-	C	69785428	A	C	69785428	3	2	232	1	0	0	0	0	1	0	0	0	7111	146	6	5	2466	5	HERC4	10	69785428	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	70973	69785428	65749319	1529	17055										
HERC4	0	genome.wustl.edu	37	chr10	69832821	69832821	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaatttcttcatcaattccAcccaaacctagctgcccaaa	2	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	69832821	69832821	A	C	SNP	HERC4	ENST00000427635	human	ensembl	69_37n	-1	known	missense	c.34	p.W12G	0.998	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HERC4	HGNC	ENSG00000148634	130	0	0	86	17	16.35	-	-	-	C	69832821	A	C	69832821	3	2	232	1	0	0	0	0	1	0	0	0	7111	146	6	5	3224	5	HERC4	10	69832821	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47393	69832821	65701926	1530	17056										
MYPN	0	genome.wustl.edu	37	chr10	69934372	69934372	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttctctccctgccatcccAcccacaaatgccatggggct	6	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	69934372	69934372	A	C	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	silent	c.2523	p.P841	0.979	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	95	0	0	63	21	25	-	-	-	C	69934372	A	C	69934372	2	2	232	1	0	0	0	0	0	0	0	1	10170	146	6	5		5	MYPN	10	69934372	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	101551	69934372	65600375	1531	17057										
RUFY2	0	genome.wustl.edu	37	chr10	70139109	70139110	+	RNA	INS	-	-	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctaatggtttttgtggcaINSggtgtaggaactgaataaag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	70139109	70139110	-	G	INS	RUFY2	ENST00000491118	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	RUFY2	HGNC	ENSG00000204130	41	0	0	51	6	10.53	-	-	-	G	70139110	-	G	70139109	6	5	232	0	1	1	1	0	0	0	0	0	13825	203	7	0		0	RUFY2	10	70139109	RNA	INS	-	TCGA-A8-A0A6-01A-12W-A071-09	204737	70139109	65395638	1532	17058										
H2AFY2	0	genome.wustl.edu	37	chr10	71855471	71855471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagtggagggcattgtccAcccaaccacagccgaaattg	12	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	71855471	71855471	A	C	SNP	H2AFY2	ENST00000373255	human	ensembl	69_37n	1	known	missense	c.650	p.H217P	1.000	pfam_A1pp,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp	pfam_A1pp,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284	41	0	0	60	16	21.05	-	-	-	C	71855471	A	C	71855471	3	2	232	1	0	0	0	0	1	0	0	0	6981	159	6	5	668	5	H2AFY2	10	71855471	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1716362	71855471	63679276	1533	17059										
DNAJB12	0	genome.wustl.edu	37	chr10	74104794	74104794	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgagggggcatcggtcccAcctgctttcctgtgggtggc	16	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	74104794	74104794	A	C	SNP	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	silent	c.327	p.G109	0.000	NULL	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	107	0	0	81	23	21.1	-	-	-	C	74104794	A	C	74104794	2	2	232	1	0	0	0	0	0	0	0	1	4652	146	6	5		5	DNAJB12	10	74104794	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2249323	74104794	61429953	1534	17060										
OIT3	0	genome.wustl.edu	37	chr10	74666391	74666391	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaaacaacggtggctgcagTgagatctgtgtgaacctcaa	11	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	74666391	74666391	T	G	SNP	OIT3	ENST00000334011	human	ensembl	69_37n	1	known	missense	c.582	p.S194R	1.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Zona_pellucida_Endoglin/CD105,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	OIT3	HGNC	ENSG00000138315	232	0	0	200	34	14.41	-	-	-	G	74666391	T	G	74666391	3	3	232	1	0	0	0	0	1	0	0	0	10922	1693	59	5	596	5	OIT3	10	74666391	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	561597	74666391	60868356	1535	17061										
USP54	0	genome.wustl.edu	37	chr10	75258655	75258655	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggatgaacaatgggagggTgggagggtgaatggaaaaga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	75258655	75258655	T	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.4787	p.H1596P	0.001	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	169	0	0	134	33	19.3	-	-	-	G	75258655	T	G	75258655	3	3	232	1	0	0	0	0	1	0	0	0	17182	1696	59	5	271	5	USP54	10	75258655	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	592264	75258655	60276092	1536	17062	181	2								
USP54	0	genome.wustl.edu	37	chr10	75258663	75258663	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaatgggagggtgggagggTgaatggaaaagatcactcca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	75258663	75258663	T	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	silent	c.4779	p.S1593	0.001	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	186	0	0	151	34	18.38	-	-	-	G	75258663	T	G	75258663	2	3	232	1	0	0	0	0	0	0	0	1	17182	1683	59	5		5	USP54	10	75258663	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8	75258663	60276084	1537	17063	181	2								
KIAA0913	0	genome.wustl.edu	37	chr10	75557188	75557188	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacatcggatagttcccccAccttaagccggagaccactt	7	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	75557188	75557188	A	C	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.3487	p.T1163P	0.998	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	65	0	0	67	17	20.24	-	-	-	C	75557188	A	C	75557188	3	2	232	1	0	0	0	0	1	0	0	0	8252	159	6	5	3557	5	KIAA0913	10	75557188	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	298525	75557188	59977559	1538	17064										
PLAU	0	genome.wustl.edu	37	chr10	75675063	75675063	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttgtgaagctgatttcccAccgggagtgtcagcagcccc	12	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	75675063	75675063	A	C	SNP	PLAU	ENST00000372764	human	ensembl	69_37n	1	known	missense	c.1025	p.H342P	0.095	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861	66	0	0	77	13	14.44	-	-	-	C	75675063	A	C	75675063	3	2	232	1	0	0	0	0	1	0	0	0	12096	159	6	5	1097	5	PLAU	10	75675063	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	117875	75675063	59859684	1539	17065										
ADK	0	genome.wustl.edu	37	chr10	76468174	76468174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taattagacggactggctgcAcctttcctgagaagccagac	10	11	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	76468174	76468174	A	C	SNP	ADK	ENST00000286621	human	ensembl	69_37n	1	known	missense	c.1060	p.T354P	1.000	pfam_PfkB	pfam_PfkB,prints_Adenokinase	-	no_errors	ADK	HGNC	ENSG00000156110	145	1	0.68	90	26	22.41	-	-	-	C	76468174	A	C	76468174	3	2	232	1	0	0	0	0	1	0	0	0	320	159	6	5	1120	5	ADK	10	76468174	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	793111	76468174	59066573	1540	17066										
POLR3A	0	genome.wustl.edu	37	chr10	79745707	79745707	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaaacttttctacttgggTgggggtgatgcggtccagct	14	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	79745707	79745707	T	G	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	missense	c.3025	p.T1009P	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	112	0	0	89	11	11	-	-	-	G	79745707	T	G	79745707	3	3	232	1	0	0	0	0	1	0	0	0	12302	1696	59	5	1183	5	POLR3A	10	79745707	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3277533	79745707	55789040	1541	17067										
ZCCHC24	0	genome.wustl.edu	37	chr10	81154121	81154121	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcatccattttctcttgcActtgggacacttgtactcgc	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	81154121	81154121	A	C	SNP	ZCCHC24	ENST00000372336	human	ensembl	69_37n	-1	known	missense	c.523	p.C175G	1.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC24	HGNC	ENSG00000165424	47	0	0	34	4	10.53	-	-	-	C	81154121	A	C	81154121	3	2	232	1	0	0	0	0	1	0	0	0	17684	159	6	5	210	5	ZCCHC24	10	81154121	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1408414	81154121	54380626	1542	17068										
TSPAN14	0	genome.wustl.edu	37	chr10	82267071	82267071	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtgggcgtggtgatgttcAccctggggttcgccggctgc	18	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	82267071	82267071	A	C	SNP	TSPAN14	ENST00000372156	human	ensembl	69_37n	1	known	missense	c.220	p.T74P	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN14	HGNC	ENSG00000108219	89	0	0	86	20	18.87	-	-	-	C	82267071	A	C	82267071	3	2	232	1	0	0	0	0	1	0	0	0	16734	159	6	5	230	5	TSPAN14	10	82267071	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1112950	82267071	53267676	1543	17069										
TSPAN14	0	genome.wustl.edu	37	chr10	82280511	82280511	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaccccttcctttgcaccAcccaccatgccccacgtagc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	82280511	82280511	A	C	SNP	TSPAN14	ENST00000372160	human	ensembl	69_37n	1	known	silent	c.357	p.P119	0.000	NULL	NULL	-	no_errors	TSPAN14	HGNC	ENSG00000108219	332	3	0.89	236	80	25.24	-	-	-	C	82280511	A	C	82280511	2	2	232	1	0	0	0	0	0	0	0	1	16734	174	6	5		5	TSPAN14	10	82280511	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13440	82280511	53254236	1544	17070	182	2								
TSPAN14	0	genome.wustl.edu	37	chr10	82280515	82280515	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccttcctttgcaccacccAccatgccccacgtagctgaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	82280515	82280515	A	C	SNP	TSPAN14	ENST00000372160	human	ensembl	69_37n	1	known	missense	c.361	p.T121P	0.000	NULL	NULL	-	no_errors	TSPAN14	HGNC	ENSG00000108219	332	2	0.59	258	55	17.46	-	-	-	C	82280515	A	C	82280515	3	2	232	1	0	0	0	0	1	0	0	0	16734	174	6	5		5	TSPAN14	10	82280515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4	82280515	53254232	1545	17071	182	2								
TSPAN14	0	genome.wustl.edu	37	chr10	82280584	82280584	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttcttcagcctctgtagcAccagacactgcacctcctga	6	17	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	82280584	82280584	A	C	SNP	TSPAN14	ENST00000372160	human	ensembl	69_37n	1	known	missense	c.430	p.T144P	0.000	NULL	NULL	-	no_errors	TSPAN14	HGNC	ENSG00000108219	225	2	0.88	145	35	19.23	-	-	-	C	82280584	A	C	82280584	3	2	232	1	0	0	0	0	1	0	0	0	16734	174	6	5		5	TSPAN14	10	82280584	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69	82280584	53254163	1546	17072										
CDHR1	0	genome.wustl.edu	37	chr10	85972884	85972884	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaggaacccaacaacctggTggactattccatcacccatg	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	85972884	85972884	T	G	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	missense	c.1820	p.V607G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	140	0	0	112	22	16.3	-	-	-	G	85972884	T	G	85972884	3	3	232	1	0	0	0	0	1	0	0	0	3147	1696	59	5	1882	5	CDHR1	10	85972884	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3692300	85972884	49561863	1547	17073										
RGR	0	genome.wustl.edu	37	chr10	86008622	86008622	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaagctgtacttggcaggTgtgggaggtggaaaggatcg	17	6	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	86008622	86008622	T	G	SNP	RGR	ENST00000483744	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RGR	HGNC	ENSG00000148604	84	0	0	38	15	27.78	-	-	-	G	86008622	T	G	86008622	1	3	232	0	1	0	0	0	0	0	0	0	13375	1711	59	5		5	RGR	10	86008622	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	35738	86008622	49526125	1548	17074										
FAM190B	0	genome.wustl.edu	37	chr10	86185598	86185598	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtggacaggagcattaccAcctcagccaccctgaccact							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	86185598	86185598	A	C	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.1817	p.H606P	0.998	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	180	0	0	94	26	21.67	-	-	-	C	86185598	A	C	86185598	3	2	232	1	0	0	0	0	1	0	0	0	5564	159	6	5	1831	5	FAM190B	10	86185598	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	176976	86185598	49349149	1549	17075	183	2								
FAM190B	0	genome.wustl.edu	37	chr10	86185607	86185607	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagcattaccacctcagccAccctgaccactatcatcacc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	86185607	86185607	A	C	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.1826	p.H609P	0.996	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	180	0	0	94	29	23.39	-	-	-	C	86185607	A	C	86185607	3	2	232	1	0	0	0	0	1	0	0	0	5564	159	6	5	1840	5	FAM190B	10	86185607	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	86185607	49349140	1550	17076	183	2								
AGAP11	0	genome.wustl.edu	37	chr10	88768706	88768706	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccagtatctccagcaccAccagccccaagctcaacctg	6	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	88768706	88768706	A	C	SNP	AGAP11	ENST00000433214	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AGAP11	HGNC	ENSG00000151303	200	2	0.98	147	33	18.33	-	-	-	C	88768706	A	C	88768706	1	2	232	0	1	0	0	0	0	0	0	0	367	159	6	5		5	AGAP11	10	88768706	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2583099	88768706	46766041	1551	17077										
AGAP11	0	genome.wustl.edu	37	chr10	88768905	88768905	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaggagcgggatgcctgggTccaagccatccagagccaga	15	11	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	88768905	88768905	T	G	SNP	AGAP11	ENST00000444431	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AGAP11	HGNC	ENSG00000151303	177	1	0.56	151	21	12.07	-	-	-	G	88768905	T	G	88768905	1	3	232	0	1	0	0	0	0	0	0	0	367	1667	58	5		5	AGAP11	10	88768905	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	199	88768905	46765842	1552	17078										
RNLS	0	genome.wustl.edu	37	chr10	90332663	90332663	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaaagcagactcacaggTggtgatgtcaccttgaagct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	90332663	90332663	T	G	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	missense	c.523	p.T175P	0.285	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	163	0	0	125	33	20.89	-	-	-	G	90332663	T	G	90332663	3	3	232	1	0	0	0	0	1	0	0	0	13591	1696	59	5	597	5	RNLS	10	90332663	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1563758	90332663	45202084	1553	17079	184	2								
RNLS	0	genome.wustl.edu	37	chr10	90332666	90332666	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaagcagactcacaggtggTgatgtcaccttgaagctgca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	90332666	90332666	T	G	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	missense	c.520	p.T174P	0.000	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	161	1	0.62	116	43	27.04	-	-	-	G	90332666	T	G	90332666	3	3	232	1	0	0	0	0	1	0	0	0	13591	1696	59	5	600	5	RNLS	10	90332666	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3	90332666	45202081	1554	17080	184	2								
LIPF	0	genome.wustl.edu	37	chr10	90431603	90431603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggttttattgccttttccAccaatcccagcctggctaaa	6	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	90431603	90431603	A	C	SNP	LIPF	ENST00000394375	human	ensembl	69_37n	1	known	missense	c.580	p.T194P	0.873	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPF	HGNC	ENSG00000182333	1002	5	0.5	873	105	10.74	-	-	-	C	90431603	A	C	90431603	3	2	232	1	0	0	0	0	1	0	0	0	8878	159	6	5	568	5	LIPF	10	90431603	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	98937	90431603	45103144	1555	17081										
IFIT1	0	genome.wustl.edu	37	chr10	91162394	91162394	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagacttacctggacaaggTggagaacatttgcaagaagc	11	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	91162394	91162394	T	G	SNP	IFIT1	ENST00000371804	human	ensembl	69_37n	1	known	missense	c.362	p.V121G	1.000	smart_TPR_repeat	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	187	0	0	160	30	15.54	-	-	-	G	91162394	T	G	91162394	3	3	232	1	0	0	0	0	1	0	0	0	7575	1696	59	5	368	5	IFIT1	10	91162394	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	730791	91162394	44372353	1556	17082										
PCGF5	0	genome.wustl.edu	37	chr10	93011092	93011092	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgaaagtagatgaagaaggTgatgaaaatgaagatgataa	12	2	0	8			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	93011092	93011092	T	G	SNP	PCGF5	ENST00000336126	human	ensembl	69_37n	1	known	silent	c.369	p.G123	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF5	HGNC	ENSG00000180628	247	1	0.4	140	26	15.66	-	-	-	G	93011092	T	G	93011092	2	3	232	1	0	0	0	0	0	0	0	1	11650	1683	59	5		5	PCGF5	10	93011092	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1848698	93011092	42523655	1557	17083										
PPP1R3C	0	genome.wustl.edu	37	chr10	93389995	93389995	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcaatggcaaatgagaaggTatcactatctgtgccaccat	9	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	93389995	93389995	T	G	SNP	PPP1R3C	ENST00000238994	human	ensembl	69_37n	-1	known	missense	c.643	p.T215P	1.000	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938	243	1	0.41	165	23	12.23	-	-	-	G	93389995	T	G	93389995	3	3	232	1	0	0	0	0	1	0	0	0	12450	1638	57	5	314	5	PPP1R3C	10	93389995	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	378903	93389995	42144752	1558	17084										
CPEB3	0	genome.wustl.edu	37	chr10	93841170	93841170	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaatgccacgcggccagcAcctttggggtacttcagctc	12	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	93841170	93841170	A	C	SNP	CPEB3	ENST00000265997	human	ensembl	69_37n	-1	known	silent	c.1776	p.G592	0.999	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB3	HGNC	ENSG00000107864	113	1	0.87	88	16	15.24	-	-	-	C	93841170	A	C	93841170	2	2	232	1	0	0	0	0	0	0	0	1	3832	146	6	5		5	CPEB3	10	93841170	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	451175	93841170	41693577	1559	17085										
IDE	0	genome.wustl.edu	37	chr10	94267956	94267956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccaccaacaagagtattaAcccagcctgcaacattcaaa	5	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	94267956	94267956	A	C	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.1067	p.V356G	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	256	1	0.39	230	40	14.76	-	-	-	C	94267956	A	C	94267956	3	2	232	1	0	0	0	0	1	0	0	0	7547	43	2	5	2064	5	IDE	10	94267956	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	426786	94267956	41266791	1560	17086										
MYOF	0	genome.wustl.edu	37	chr10	95115412	95115412	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgcaggaaacaatgggggTgtttgctccgaacacagtgg	14	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	95115412	95115412	T	G	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.3376	p.T1126P	1.000	pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	321	0	0	189	28	12.84	-	-	-	G	95115412	T	G	95115412	3	3	232	1	0	0	0	0	1	0	0	0	10161	1696	59	5	2905	5	MYOF	10	95115412	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	847456	95115412	40419335	1561	17087										
CYP2C18	0	genome.wustl.edu	37	chr10	96495237	96495237	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggctgctcctgtgctgtcAcctgcaattctcccttatca	7	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	96495237	96495237	A	C	SNP	CYP2C18	ENST00000476630	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP2C18	HGNC	ENSG00000108242	209	1	0.47	199	52	20.72	-	-	-	C	96495237	A	C	96495237	1	2	232	0	1	0	0	0	0	0	0	0	4196	174	6	5		5	CYP2C18	10	96495237	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1379825	96495237	39039510	1562	17088										
CYP2C19	0	genome.wustl.edu	37	chr10	96540402	96540402	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaacatcaggattgtaagcAccccctggatccaggtaagg	10	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	96540402	96540402	A	C	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.628	p.T210P	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	349	3	0.85	260	31	10.65	-	-	-	C	96540402	A	C	96540402	3	2	232	1	0	0	0	0	1	0	0	0	4197	159	6	5	642	5	CYP2C19	10	96540402	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	45165	96540402	38994345	1563	17089										
ENTPD1	0	genome.wustl.edu	37	chr10	97604242	97604242	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttgtacaggatggaaagTgaagagttggcagacagggt	15	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	97604242	97604242	T	G	SNP	ENTPD1	ENST00000371207	human	ensembl	69_37n	1	known	missense	c.459	p.S153R	0.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD1	HGNC	ENSG00000138185	227	1	0.43	178	22	11	-	-	-	G	97604242	T	G	97604242	3	3	232	1	0	0	0	0	1	0	0	0	5175	1693	59	5	538	5	ENTPD1	10	97604242	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1063840	97604242	37930505	1564	17090										
ENTPD1	0	genome.wustl.edu	37	chr10	97604262	97604262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaagagttggcagacagggTtctggatgtggtggagagga	19	3	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	97604262	97604262	T	G	SNP	ENTPD1	ENST00000371207	human	ensembl	69_37n	1	known	missense	c.479	p.V160G	0.998	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD1	HGNC	ENSG00000138185	237	2	0.84	187	33	14.86	-	-	-	G	97604262	T	G	97604262	3	3	232	1	0	0	0	0	1	0	0	0	5175	1725	60	5	558	5	ENTPD1	10	97604262	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	20	97604262	37930485	1565	17091										
TM9SF3	0	genome.wustl.edu	37	chr10	98311131	98311131	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtctaaatacatctccatgcAcctgtttccatccatattca	3	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	98311131	98311131	A	C	SNP	TM9SF3	ENST00000371142	human	ensembl	69_37n	-1	known	missense	c.830	p.V277G	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	388	0	0	280	75	20.95	-	-	-	C	98311131	A	C	98311131	3	2	232	1	0	0	0	0	1	0	0	0	16074	159	6	5	975	5	TM9SF3	10	98311131	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	706869	98311131	37223616	1566	17092										
SLIT1	0	genome.wustl.edu	37	chr10	98923169	98923169	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccttcatgtcatcaaaagcAccacgttccactgctccaat	4	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	98923169	98923169	A	C	SNP	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	silent	c.309	p.G103	0.984	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	329	1	0.3	251	38	13.15	-	-	-	C	98923169	A	C	98923169	2	2	232	1	0	0	0	0	0	0	0	1	14828	146	6	5		5	SLIT1	10	98923169	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	612038	98923169	36611578	1567	17093										
HPS1	0	genome.wustl.edu	37	chr10	100202991	100202991	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagtggccaccaagacgcActtcatctgccagggaaagg	11	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	100202991	100202991	A	C	SNP	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	missense	c.7	p.C3G	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	105	0	0	85	13	13.27	-	-	-	C	100202991	A	C	100202991	3	2	232	1	0	0	0	0	1	0	0	0	7390	159	6	5	2205	5	HPS1	10	100202991	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1279822	100202991	35331756	1568	17094										
HPSE2	0	genome.wustl.edu	37	chr10	100401668	100401668	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagttttcaggaagtccatcAccttgaccacccggccatca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	100401668	100401668	A	C	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	missense	c.1034	p.V345G	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	382	1	0.26	267	67	20.06	-	-	-	C	100401668	A	C	100401668	3	2	232	1	0	0	0	0	1	0	0	0	7396	159	6	5	806	5	HPSE2	10	100401668	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	198677	100401668	35133079	1569	17095	185	2								
HPSE2	0	genome.wustl.edu	37	chr10	100401677	100401677	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagtccatcaccttgaccAcccggccatcaatgtagcaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	100401677	100401677	A	C	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	missense	c.1025	p.V342G	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	374	0	0	278	52	15.76	-	-	-	C	100401677	A	C	100401677	3	2	232	1	0	0	0	0	1	0	0	0	7396	159	6	5	815	5	HPSE2	10	100401677	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	100401677	35133070	1570	17096	185	2								
SLC25A28	0	genome.wustl.edu	37	chr10	101370744	101370744	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggaaataggcggtcaccccAcctacttgatataccgtcct	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	101370744	101370744	A	C	SNP	SLC25A28	ENST00000370495	human	ensembl	69_37n	-1	known	silent	c.957	p.G319	0.999	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A28	HGNC	ENSG00000155287	105	1	0.94	58	16	21.33	-	-	-	C	101370744	A	C	101370744	2	2	232	1	0	0	0	0	0	0	0	1	14580	146	6	5		5	SLC25A28	10	101370744	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	969067	101370744	34164003	1571	17097										
DNMBP	0	genome.wustl.edu	37	chr10	101639792	101639792	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcccctgaccttggctgggAggtggagtctgggtctgaag	17	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	101639792	101639792	A	G	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.4396	p.S1466P	0.258	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	125	1	0.79	110	18	13.74	-	-	-	G	101639792	A	G	101639792	3	3	232	1	0	0	0	0	1	0	0	0	4709	304	11	5	417	5	DNMBP	10	101639792	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	269048	101639792	33894955	1572	17098										
CHUK	0	genome.wustl.edu	37	chr10	101953144	101953144	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgtctgaggggttactgcAccttctagactggatcctac	11	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	101953144	101953144	A	C	SNP	CHUK	ENST00000588656	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.649	-	-	-	no_errors	CHUK	HGNC	ENSG00000213341	135	0	0	124	25	16.78	-	-	-	C	101953144	A	C	101953144	5	2	232	1	0	0	0	0	0	0	1	0	3445	146	6	5	230	5	CHUK	10	101953144	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	313352	101953144	33581603	1573	17099										
CHUK	0	genome.wustl.edu	37	chr10	101953331	101953331	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagtacaaaactattcccAcctttacacaccattagtaa	2	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	101953331	101953331	A	C	SNP	CHUK	ENST00000590930	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CHUK	HGNC	ENSG00000213341	50	0	0	44	16	26.67	-	-	-	C	101953331	A	C	101953331	1	2	232	0	1	0	0	0	0	0	0	0	3445	174	6	5		5	CHUK	10	101953331	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	187	101953331	33581416	1574	17100										
C10orf76	0	genome.wustl.edu	37	chr10	103792928	103792928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctaggtactctaaattcAcctgccaaggaaacaaataa	5	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	103792928	103792928	A	C	SNP	C10orf76	ENST00000370033	human	ensembl	69_37n	-1	known	missense	c.161	p.V54G	1.000	NULL	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	172	1	0.57	92	22	19.13	-	-	-	C	103792928	A	C	103792928	3	2	232	1	0	0	0	0	1	0	0	0	1626	173	6	5	2000	5	C10orf76	10	103792928	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1839597	103792928	31741819	1575	17101										
HPS6	0	genome.wustl.edu	37	chr10	103827162	103827162	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagctgtcgggcagctggTgcaaaaggaacaatgggatc	14	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	103827162	103827162	T	G	SNP	HPS6	ENST00000299238	human	ensembl	69_37n	1	known	missense	c.1931	p.V644G	0.997	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189	49	0	0	43	11	20	-	-	-	G	103827162	T	G	103827162	3	3	232	1	0	0	0	0	1	0	0	0	7394	1696	59	5	1933	5	HPS6	10	103827162	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	34234	103827162	31707585	1576	17102										
PPRC1	0	genome.wustl.edu	37	chr10	103906456	103906456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctccagctacccctccccAccagttatggaagcccctgg	7	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	103906456	103906456	A	C	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.3707	p.H1236P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	164	1	0.6	293	45	13.24	-	-	-	C	103906456	A	C	103906456	3	2	232	1	0	0	0	0	1	0	0	0	12487	159	6	5	3741	5	PPRC1	10	103906456	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	79294	103906456	31628291	1577	17103										
GBF1	0	genome.wustl.edu	37	chr10	104117888	104117888	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgccatatgaccaaagtcacAccaggttcagagctgcccac	8	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	104117888	104117888	A	C	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	silent	c.732	p.T244	0.118	superfamily_ARM-type_fold	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	336	1	0.3	398	46	10.34	-	-	-	C	104117888	A	C	104117888	2	2	232	1	0	0	0	0	0	0	0	1	6321	146	6	5		5	GBF1	10	104117888	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	211432	104117888	31416859	1578	17104										
NFKB2	0	genome.wustl.edu	37	chr10	104160250	104160250	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catatgcctgactttgagggTgagctccccatctcacctga	9	13	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	104160250	104160250	T	G	SNP	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	splice_site	c.1798+2	e15+2	1.000	-	-	-	no_errors	NFKB2	HGNC	ENSG00000077150	42	0	0	21	5	19.23	-	-	-	G	104160250	T	G	104160250	5	3	232	1	0	0	0	0	0	0	1	0	10448	1710	59	5	1858	5	NFKB2	10	104160250	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	42362	104160250	31374497	1579	17105										
AS3MT	0	genome.wustl.edu	37	chr10	104638149	104638149	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttttaggtgagtgtctgggTggtgctttatactggaagga	15	3	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	104638149	104638149	T	G	SNP	AS3MT	ENST00000369880	human	ensembl	69_37n	1	known	silent	c.624	p.G208	0.975	NULL	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435	311	2	0.63	172	42	19.63	-	-	-	G	104638149	T	G	104638149	2	3	232	1	0	0	0	0	0	0	0	1	1009	1683	59	5		5	AS3MT	10	104638149	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	477899	104638149	30896598	1580	17106										
SLK	0	genome.wustl.edu	37	chr10	105762853	105762853	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaccaggaacaactgaaggTgaagaaatcactgagtcaag	11	7	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	105762853	105762853	T	G	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	silent	c.1917	p.G639	0.016	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	139	0	0	122	18	12.86	-	-	-	G	105762853	T	G	105762853	2	3	232	1	0	0	0	0	0	0	0	1	14837	1683	59	5		5	SLK	10	105762853	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1124704	105762853	29771894	1581	17107										
CCDC147	0	genome.wustl.edu	37	chr10	106166489	106166489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgatacagaaaattcacAccctgcagaagcgtctcatc	7	12	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	106166489	106166489	A	C	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.2194	p.T732P	0.980	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	292	1	0.34	232	33	12.45	-	-	-	C	106166489	A	C	106166489	3	2	232	1	0	0	0	0	1	0	0	0	2806	159	6	5	2252	5	CCDC147	10	106166489	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	403636	106166489	29368258	1582	17108										
SHOC2	0	genome.wustl.edu	37	chr10	112771491	112771491	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagaactgtccactcagtcAccttccacctcagattgttg	7	13	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	112771491	112771491	A	C	SNP	SHOC2	ENST00000369452	human	ensembl	69_37n	1	known	missense	c.1664	p.H555P	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061	152	0	0	89	21	19.09	-	-	-	C	112771491	A	C	112771491	3	2	232	1	0	0	0	0	1	0	0	0	14376	159	6	5	1694	5	SHOC2	10	112771491	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6605002	112771491	22763256	1583	17109										
ACSL5	0	genome.wustl.edu	37	chr10	114154737	114154737	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttaactttttgttttccccActtccgaccccggcgttgat	6	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	114154737	114154737	A	C	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	silent	c.201	p.P67	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	351	1	0.28	281	39	12.19	-	-	-	C	114154737	A	C	114154737	2	2	232	1	0	0	0	0	0	0	0	1	180	146	6	5		5	ACSL5	10	114154737	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1383246	114154737	21380010	1584	17110										
ACSL5	0	genome.wustl.edu	37	chr10	114154801	114154801	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcttcttgtggctgatcAccagacctcaacccgtctta	6	15	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	114154801	114154801	A	C	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	missense	c.265	p.T89P	0.960	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	247	0	0	223	28	11.16	-	-	-	C	114154801	A	C	114154801	3	2	232	1	0	0	0	0	1	0	0	0	180	159	6	5	271	5	ACSL5	10	114154801	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	64	114154801	21379946	1585	17111										
HABP2	0	genome.wustl.edu	37	chr10	115343055	115343055	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatgagcagagctttagggTggagaagatattcaagtaca	12	5	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	115343055	115343055	T	G	SNP	HABP2	ENST00000351270	human	ensembl	69_37n	1	known	missense	c.1175	p.V392G	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HABP2	HGNC	ENSG00000148702	93	0	0	101	17	14.41	-	-	-	G	115343055	T	G	115343055	3	3	232	1	0	0	0	0	1	0	0	0	6989	1696	59	5	1213	5	HABP2	10	115343055	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1188254	115343055	20191692	1586	17112										
EIF3A	0	genome.wustl.edu	37	chr10	120797950	120797950	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttctttctctctccatccAcctgtttttttgaaaaagca	3	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	120797950	120797950	A	C	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	silent	c.3528	p.G1176	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	194	0	0	185	28	12.96	-	-	-	C	120797950	A	C	120797950	2	2	232	1	0	0	0	0	0	0	0	1	5047	173	6	5		5	EIF3A	10	120797950	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5454895	120797950	14736797	1587	17113										
TIAL1	0	genome.wustl.edu	37	chr10	121336184	121336184	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccataaggcggtacttgccAcccatttgccatatactgtc	7	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	121336184	121336184	A	C	SNP	TIAL1	ENST00000369093	human	ensembl	69_37n	-1	known	missense	c.991	p.W331G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923	223	0	0	143	22	13.25	-	-	-	C	121336184	A	C	121336184	3	2	232	1	0	0	0	0	1	0	0	0	15984	159	6	5	195	5	TIAL1	10	121336184	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	538234	121336184	14198563	1588	17114										
WDR11	0	genome.wustl.edu	37	chr10	122648628	122648628	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgcatcgcttggaaaggTgatacattagtgcttggaga	12	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	122648628	122648628	T	G	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	silent	c.2160	p.G720	0.616	pfam_WD40_repeat,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	113	0	0	86	20	18.87	-	-	-	G	122648628	T	G	122648628	2	3	232	1	0	0	0	0	0	0	0	1	17370	1683	59	5		5	WDR11	10	122648628	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1312444	122648628	12886119	1589	17115										
TACC2	0	genome.wustl.edu	37	chr10	123954633	123954633	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgccagctccacccccaccAccccccgaagtcatcccaga	5	24	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	123954633	123954633	A	C	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.5913	p.P1971	0.720	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	71	0	0	54	18	25	-	-	-	C	123954633	A	C	123954633	2	2	232	1	0	0	0	0	0	0	0	1	15594	146	6	5		5	TACC2	10	123954633	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1306005	123954633	11580114	1590	17116										
TACC2	0	genome.wustl.edu	37	chr10	123988980	123988980	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttagcagaaaagaaccccccActattcgctcagaaactcca	5	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	123988980	123988980	A	C	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.8016	p.P2672	1.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	322	1	0.31	388	56	12.56	-	-	-	C	123988980	A	C	123988980	2	2	232	1	0	0	0	0	0	0	0	1	15594	146	6	5		5	TACC2	10	123988980	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34347	123988980	11545767	1591	17117										
DMBT1	0	genome.wustl.edu	37	chr10	124339124	124339124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtttggccctgaggctggTgaatggaggcgacaggtgtc	17	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	124339124	124339124	T	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.710	p.V237G	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	256	1	0.39	173	36	17.14	-	-	-	G	124339124	T	G	124339124	3	3	232	1	0	0	0	0	1	0	0	0	4613	1696	59	5	748	5	DMBT1	10	124339124	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	350144	124339124	11195623	1592	17118										
DMBT1	0	genome.wustl.edu	37	chr10	124358320	124358320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtttggccctgaggctggTgaatggaggtgacaggtgtc	17	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	124358320	124358320	T	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.2987	p.V996G	0.880	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	321	1	0.31	243	60	19.74	-	-	-	G	124358320	T	G	124358320	3	3	232	1	0	0	0	0	1	0	0	0	4613	1696	59	5	3089	5	DMBT1	10	124358320	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19196	124358320	11176427	1593	17119										
DMBT1	0	genome.wustl.edu	37	chr10	124380603	124380603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtttggctctgaggctggTgaatggaggtgacaggtgtc	17	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	124380603	124380603	T	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.5315	p.V1772G	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	249	2	0.79	175	43	19.72	-	-	-	G	124380603	T	G	124380603	3	3	232	1	0	0	0	0	1	0	0	0	4613	1696	59	5	5090	5	DMBT1	10	124380603	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	22283	124380603	11154144	1594	17120										
FAM24B	0	genome.wustl.edu	37	chr10	124608796	124608796	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttatgtcgcaacagcaaggTggcagggaatcaaaactggc	12	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	124608796	124608796	T	G	SNP	FAM24B	ENST00000368896	human	ensembl	69_37n	-1	known	silent	c.252	p.P84	0.892	NULL	NULL	-	no_errors	FAM24B	HGNC	ENSG00000213185	203	0	0	164	28	14.51	-	-	-	G	124608796	T	G	124608796	2	3	232	1	0	0	0	0	0	0	0	1	5591	1683	59	5		5	FAM24B	10	124608796	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	228193	124608796	10925951	1595	17121										
CHST15	0	genome.wustl.edu	37	chr10	125805522	125805522	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttttgaagcgcaaaaacccAccccagttttcgttcccttc	5	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	125805522	125805522	A	C	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	silent	c.207	p.G69	0.992	NULL	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	138	0	0	159	27	14.52	-	-	-	C	125805522	A	C	125805522	2	2	232	1	0	0	0	0	0	0	0	1	3432	146	6	5		5	CHST15	10	125805522	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1196726	125805522	9729225	1596	17122										
ADAM12	0	genome.wustl.edu	37	chr10	127760149	127760149	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccggcaggttaaacaggcacAcccccattcctttctccagg	8	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	127760149	127760149	A	C	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.1229	p.V410G	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	300	3	0.99	243	66	21.36	-	-	-	C	127760149	A	C	127760149	3	2	232	1	0	0	0	0	1	0	0	0	236	159	6	5	1656	5	ADAM12	10	127760149	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1954627	127760149	7774598	1597	17123										
ADAM12	0	genome.wustl.edu	37	chr10	127824027	127824027	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccgtgttctcttgcctaggTggaggtgtagctgagctggg	16	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	127824027	127824027	T	G	SNP	ADAM12	ENST00000494661	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM12	HGNC	ENSG00000148848	29	0	0	24	7	22.58	-	-	-	G	127824027	T	G	127824027	1	3	232	0	1	0	0	0	0	0	0	0	236	1711	59	5		5	ADAM12	10	127824027	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	63878	127824027	7710720	1598	17124										
PTPRE	0	genome.wustl.edu	37	chr10	129864432	129864432	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgtggttttggtcgactacAccatccggaagttctgcata	11	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	129864432	129864432	A	C	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	missense	c.817	p.T273P	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	211	0	0	189	32	14.41	-	-	-	C	129864432	A	C	129864432	3	2	232	1	0	0	0	0	1	0	0	0	12883	159	6	5	890	5	PTPRE	10	129864432	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2040405	129864432	5670315	1599	17125										
MKI67	0	genome.wustl.edu	37	chr10	129899721	129899721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccctccgctctcctctgccAccttaggctgggagctctca	9	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	129899721	129899721	A	C	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.9506	p.V3169G	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	145	0	0	148	18	10.78	-	-	-	C	129899721	A	C	129899721	3	2	232	1	0	0	0	0	1	0	0	0	9669	159	6	5	272	5	MKI67	10	129899721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	35289	129899721	5635026	1600	17126										
MKI67	0	genome.wustl.edu	37	chr10	129905185	129905185	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagctcttctttcacgcccActttccccagggatgtcttg	9	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	129905185	129905185	A	C	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.4919	p.V1640G	0.021	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	370	0	0	609	71	10.36	-	-	-	C	129905185	A	C	129905185	3	2	232	1	0	0	0	0	1	0	0	0	9669	159	6	5	4863	5	MKI67	10	129905185	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5464	129905185	5629562	1601	17127										
MTG1	0	genome.wustl.edu	37	chr10	135215538	135215538	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacgctgccatggggttgggTccctgaggccttcctcggag	16	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	10	135215538	135215538	T	G	SNP	MTG1	ENST00000460848	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	41	0	0	24	7	21.88	-	-	-	G	135215538	T	G	135215538	1	3	232	0	1	0	0	0	0	0	0	0	9998	1682	58	5		5	MTG1	10	135215538	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5310353	135215538	319209	1602	17128										
BET1L	0	genome.wustl.edu	37	chr11	205596	205596	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagggcactgatacacgcacAccgtgggcccttaccatgcc	10	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	205596	205596	A	C	SNP	BET1L	ENST00000325147	human	ensembl	69_37n	-1	known	silent	c.183	p.G61	0.000	NULL	pfscan_T_SNARE_dom	-	no_errors	BET1L	HGNC	ENSG00000177951	33	0	0	26	7	21.21	-	-	-	C	205596	A	C	205596	2	2	232	1	0	0	0	0	0	0	0	1	1413	146	6	5		5	BET1L	11	205596	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		205596	134800920	1603	17129										
MUC5B	0	genome.wustl.edu	37	chr11	1268931	1268931	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccgtgcggccggaggggcAgtctgtgagcagcccctggg	18	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	1268931	1268931	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10830	p.A3610	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0	11	5	27.78	-	-	-	C	1268931	A	C	1268931	2	2	232	1	0	0	0	0	0	0	0	1	10051	175	7	5		5	MUC5B	11	1268931	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1063335	1268931	133737585	1604	17130										
KRTAP5-1	0	genome.wustl.edu	37	chr11	1606198	1606198	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagccacaaccccccttggaTcccccacaagagccacagcc	7	20	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	1606198	1606198	T	C	SNP	KRTAP5-1	ENST00000382171	human	ensembl	69_37n	-1	known	silent	c.282	p.G94	0.006	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869	97	1	0.99	129	25	15.92	-	-	-	C	1606198	T	C	1606198	2	2	232	1	0	0	0	0	0	0	0	1	8612	1422	50	5		5	KRTAP5-1	11	1606198	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	337267	1606198	133400318	1605	17131										
STIM1	0	genome.wustl.edu	37	chr11	4112661	4112661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccggctgatcgagggggtccAcccagggtctctggtggaga	17	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	4112661	4112661	A	C	SNP	STIM1	ENST00000300737	human	ensembl	69_37n	1	known	missense	c.1691	p.H564P	0.998	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323	78	0	0	132	30	18.29	-	-	-	C	4112661	A	C	4112661	3	2	232	1	0	0	0	0	1	0	0	0	15374	159	6	5	1737	5	STIM1	11	4112661	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2506463	4112661	130893855	1606	17132										
TRIM21	0	genome.wustl.edu	37	chr11	4411502	4411502	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaggacagacgctgcccccAcctttcccaacctgagagat	8	16	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	4411502	4411502	A	C	SNP	TRIM21	ENST00000254436	human	ensembl	69_37n	-1	known	silent	c.138	p.G46	0.000	pfam_Znf_C3HC4_RING-type,smart_Ubox_domain,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109	143	1	0.69	141	33	18.64	-	-	-	C	4411502	A	C	4411502	2	2	232	1	0	0	0	0	0	0	0	1	16591	146	6	5		5	TRIM21	11	4411502	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	298841	4411502	130595014	1607	17133										
OR52K2	0	genome.wustl.edu	37	chr11	4471427	4471427	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatttctatctgctcttcccAcccatggtcaatcccataat	3	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	4471427	4471427	A	C	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	silent	c.858	p.P286	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	828	8	0.95	744	145	16.22	-	-	-	C	4471427	A	C	4471427	2	2	232	1	0	0	0	0	0	0	0	1	11197	146	6	5		5	OR52K2	11	4471427	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	59925	4471427	130535089	1608	17134										
OR52M1	0	genome.wustl.edu	37	chr11	4566807	4566807	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatcgctacgtggccatctgCaacccactacgtcatagcat	8	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	4566807	4566807	C	T	SNP	OR52M1	ENST00000360213	human	ensembl	69_37n	1	known	silent	c.387	p.C129	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52M1	HGNC	ENSG00000197790	212	0	0	144	89	38.2	-	-	-	T	4566807	C	T	4566807	2	4	232	1	0	0	0	0	0	0	0	1	11199	718	25	4		4	OR52M1	11	4566807	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	95380	4566807	130439709	1609	17135										
OR51V1	0	genome.wustl.edu	37	chr11	5221377	5221377	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggtgcaggcagaaagagTgagaaaggatgtggaaatga	16	4	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	5221377	5221377	T	G	SNP	OR51V1	ENST00000321255	human	ensembl	69_37n	-1	known	missense	c.554	p.H185P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	177	1	0.56	164	25	13.23	-	-	-	G	5221377	T	G	5221377	3	3	232	1	0	0	0	0	1	0	0	0	11180	1696	59	5	414	5	OR51V1	11	5221377	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	654570	5221377	129785139	1610	17136										
OR51B4	0	genome.wustl.edu	37	chr11	5322888	5322888	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaatgaatgaaggattgggTgaaacaggcagcatgggcaa	15	4	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	5322888	5322888	T	G	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	missense	c.289	p.T97P	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	185	0	0	275	31	10.1	-	-	-	G	5322888	T	G	5322888	3	3	232	1	0	0	0	0	1	0	0	0	11163	1696	59	5	646	5	OR51B4	11	5322888	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	101511	5322888	129683628	1611	17137										
OR51Q1	0	genome.wustl.edu	37	chr11	5444285	5444285	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaatatctacctgctggcAcccccggtgatgaaccccat	8	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	5444285	5444285	A	C	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	silent	c.855	p.A285	0.387	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	130	1	0.76	144	32	18.18	-	-	-	C	5444285	A	C	5444285	2	2	232	1	0	0	0	0	0	0	0	1	11177	146	6	5		5	OR51Q1	11	5444285	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	121397	5444285	129562231	1612	17138										
TRIM34	0	genome.wustl.edu	37	chr11	5626721	5626721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgagaatgatctggtccAccagacccagtcgctgcgag	13	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	5626721	5626721	A	C	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	missense	c.758	p.H253P	0.033	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	138	1	0.72	216	27	11.11	-	-	-	C	5626721	A	C	5626721	3	2	232	1	0	0	0	0	1	0	0	0	16604	159	6	5		5	TRIM34	11	5626721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	182436	5626721	129379795	1613	17139										
OR52W1	0	genome.wustl.edu	37	chr11	6220481	6220481	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaactctacaactcaattccAccttcctacacccaaacttc	0	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6220481	6220481	A	C	SNP	OR52W1	ENST00000311352	human	ensembl	69_37n	1	known	missense	c.28	p.T10P	0.970	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485	270	2	0.74	201	52	20.55	-	-	-	C	6220481	A	C	6220481	3	2	232	1	0	0	0	0	1	0	0	0	11205	159	6	5	30	5	OR52W1	11	6220481	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	593760	6220481	128786035	1614	17140										
OR52W1	0	genome.wustl.edu	37	chr11	6221334	6221334	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctgccacctgccctcaAccccctcatctatggggccc	8	20	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6221334	6221334	A	C	SNP	OR52W1	ENST00000311352	human	ensembl	69_37n	1	known	missense	c.881	p.N294T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485	554	3	0.54	446	82	15.44	-	-	-	C	6221334	A	C	6221334	3	2	232	1	0	0	0	0	1	0	0	0	11205	43	2	5	883	5	OR52W1	11	6221334	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	853	6221334	128785182	1615	17141										
FAM160A2	0	genome.wustl.edu	37	chr11	6238903	6238903	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcaggccatgatcctggcActccattgagctggggaggg	14	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6238903	6238903	A	C	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.1955	p.V652G	0.210	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	65	0	0	143	21	12.57	-	-	-	C	6238903	A	C	6238903	3	2	232	1	0	0	0	0	1	0	0	0	5509	159	6	5	1021	5	FAM160A2	11	6238903	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17569	6238903	128767613	1616	17142										
CCKBR	0	genome.wustl.edu	37	chr11	6292390	6292390	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgggatccggctcccggcccAcccaggccaagctgctggct	13	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6292390	6292390	A	C	SNP	CCKBR	ENST00000525462	human	ensembl	69_37n	1	known	missense	c.1168	p.T390P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCKBR	HGNC	ENSG00000110148	51	0	0	75	15	16.48	-	-	-	C	6292390	A	C	6292390	3	2	232	1	0	0	0	0	1	0	0	0	2908	159	6	5	979	5	CCKBR	11	6292390	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	53487	6292390	128714126	1617	17143										
HPX	0	genome.wustl.edu	37	chr11	6453030	6453030	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggaagacatatacctgggTgccctggaggacaaaggatg	14	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6453030	6453030	T	G	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	missense	c.970	p.T324P	0.983	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	338	0	0	453	59	11.5	-	-	-	G	6453030	T	G	6453030	3	3	232	1	0	0	0	0	1	0	0	0	7397	1696	59	5	426	5	HPX	11	6453030	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	160640	6453030	128553486	1618	17144										
ARFIP2	0	genome.wustl.edu	37	chr11	6501239	6501239	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccagagcccccatagccAccagacacaatgctggtttc	7	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6501239	6501239	A	C	SNP	ARFIP2	ENST00000445086	human	ensembl	69_37n	-1	known	missense	c.23	p.V8G	0.972	NULL	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254	408	2	0.49	361	53	12.77	-	-	-	C	6501239	A	C	6501239	3	2	232	1	0	0	0	0	1	0	0	0	857	146	6	5	890	5	ARFIP2	11	6501239	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	48209	6501239	128505277	1619	17145										
ARFIP2	0	genome.wustl.edu	37	chr11	6501285	6501285	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggttgggtcctgacaccatcAcctgctggaggtcctatagg	13	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6501285	6501285	A	C	SNP	ARFIP2	ENST00000254584	human	ensembl	69_37n	-1	known	missense	c.113	p.V38G	1.000	NULL	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254	326	2	0.61	251	52	17.05	-	-	-	C	6501285	A	C	6501285	3	2	232	1	0	0	0	0	1	0	0	0	857	159	6	5	936	5	ARFIP2	11	6501285	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	6501285	128505231	1620	17146										
ILK	0	genome.wustl.edu	37	chr11	6631244	6631244	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcctggtcgcatgtatgcAcctgcctgggtagcccccga	12	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	6631244	6631244	A	C	SNP	ILK	ENST00000299421	human	ensembl	69_37n	1	known	silent	c.1056	p.A352	0.959	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333	62	0	0	51	13	20	-	-	-	C	6631244	A	C	6631244	2	2	232	1	0	0	0	0	0	0	0	1	7767	146	6	5		5	ILK	11	6631244	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	129959	6631244	128375272	1621	17147										
PPFIBP2	0	genome.wustl.edu	37	chr11	7660996	7660996	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcggagcacaaatatcccActttacctgggaagctttca	9	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	7660996	7660996	A	C	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.1270	p.T424P	0.994	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	218	1	0.45	331	42	11.2	-	-	-	C	7660996	A	C	7660996	3	2	232	1	0	0	0	0	1	0	0	0	12387	159	6	5	1324	5	PPFIBP2	11	7660996	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1029752	7660996	127345520	1622	17148										
OR5P2	0	genome.wustl.edu	37	chr11	7817784	7817784	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgaggtgggaagtgcaggTggagaaggccttgtggtgcc	20	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	7817784	7817784	T	G	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	missense	c.706	p.T236P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	197	0	0	201	29	12.5	-	-	-	G	7817784	T	G	7817784	3	3	232	1	0	0	0	0	1	0	0	0	11251	1696	59	5	266	5	OR5P2	11	7817784	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	156788	7817784	127188732	1623	17149										
NLRP10	0	genome.wustl.edu	37	chr11	7984900	7984900	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccggaatcaggccctccaacTcccctctggccagtgggggc	12	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	7984900	7984900	T	C	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	missense	c.143	p.E48G	1.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	87	0	0	111	24	17.78	-	-	-	C	7984900	T	C	7984900	3	2	232	1	0	0	0	0	1	0	0	0	10544	1551	54	5	1832	5	NLRP10	11	7984900	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	167116	7984900	127021616	1624	17150										
ST5	0	genome.wustl.edu	37	chr11	8718180	8718180	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacaaagaaccggataaacAcctccgacaccagcccattg	6	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	8718180	8718180	A	C	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	missense	c.3086	p.V1029G	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	685	4	0.58	502	88	14.89	-	-	-	C	8718180	A	C	8718180	3	2	232	1	0	0	0	0	1	0	0	0	15311	159	6	5	339	5	ST5	11	8718180	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	733280	8718180	126288336	1625	17151										
DENND5A	0	genome.wustl.edu	37	chr11	9182336	9182336	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatcagggtgttctcttccAcccctgtgatgttcacctcc	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	9182336	9182336	A	C	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	missense	c.2360	p.V787G	1.000	pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	170	1	0.58	179	33	15.49	-	-	-	C	9182336	A	C	9182336	3	2	232	1	0	0	0	0	1	0	0	0	4472	159	6	5	1551	5	DENND5A	11	9182336	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	464156	9182336	125824180	1626	17152										
DENND5A	0	genome.wustl.edu	37	chr11	9182396	9182396	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctcggcccatcttttccAccagcatcctcttggtctac	5	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	9182396	9182396	A	C	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	missense	c.2300	p.V767G	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	195	1	0.51	222	41	15.59	-	-	-	C	9182396	A	C	9182396	3	2	232	1	0	0	0	0	1	0	0	0	4472	159	6	5	1611	5	DENND5A	11	9182396	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	60	9182396	125824120	1627	17153										
SBF2	0	genome.wustl.edu	37	chr11	10052691	10052691	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaccagacacttttgcttcAccttcaatctcttccttctt	2	14	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	10052691	10052691	A	C	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	silent	c.306	p.G102	0.998	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	309	0	0	329	42	11.32	-	-	-	C	10052691	A	C	10052691	2	2	232	1	0	0	0	0	0	0	0	1	13946	146	6	5		5	SBF2	11	10052691	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	870295	10052691	124953825	1628	17154										
EIF4G2	0	genome.wustl.edu	37	chr11	10828816	10828816	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtacctgaaacgagaagcAcccccttctgcaatcgcact	7	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	10828816	10828816	A	C	SNP	EIF4G2	ENST00000339995	human	ensembl	69_37n	-1	known	silent	c.27	p.G9	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_W2_domain,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_start_codon	EIF4G2	HGNC	ENSG00000110321	192	0	0	154	32	17.2	-	-	-	C	10828816	A	C	10828816	2	2	232	1	0	0	0	0	0	0	0	1	5074	146	6	5		5	EIF4G2	11	10828816	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	776125	10828816	124177700	1629	17155										
MICALCL	0	genome.wustl.edu	37	chr11	12315232	12315232	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccctgtatctgcctcatcAcccaaagccagagtgggcag	9	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	12315232	12315232	A	C	SNP	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	missense	c.254	p.H85P	0.000	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	294	1	0.34	360	63	14.82	-	-	-	C	12315232	A	C	12315232	3	2	232	1	0	0	0	0	1	0	0	0	9643	159	6	5	260	5	MICALCL	11	12315232	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1486416	12315232	122691284	1630	17156										
MICALCL	0	genome.wustl.edu	37	chr11	12316064	12316064	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcctgcacttaggtccccAccctgcagcaagattgaaga	8	13	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	12316064	12316064	A	C	SNP	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	silent	c.1086	p.P362	0.000	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	233	0	0	352	49	12.13	-	-	-	C	12316064	A	C	12316064	2	2	232	1	0	0	0	0	0	0	0	1	9643	146	6	5		5	MICALCL	11	12316064	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	832	12316064	122690452	1631	17157										
PARVA	0	genome.wustl.edu	37	chr11	12534909	12534909	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgaatgtggtgaaaaaggTgggaaaggggtgcctgggat	19	3	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	12534909	12534909	T	G	SNP	PARVA	ENST00000334956	human	ensembl	69_37n	1	known	splice_site	c.918+2	e9+2	1.000	-	-	-	no_errors	PARVA	HGNC	ENSG00000197702	217	2	0.91	359	57	13.6	-	-	-	G	12534909	T	G	12534909	5	3	232	1	0	0	0	0	0	0	1	0	11541	1710	59	5	834	5	PARVA	11	12534909	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	218845	12534909	122471607	1632	17158										
C11orf58	0	genome.wustl.edu	37	chr11	16776441	16776441	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagaccatgatggagaaggTgatgtggctggagatgatga	17	3	0	7			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	16776441	16776441	T	G	SNP	C11orf58	ENST00000228136	human	ensembl	69_37n	1	known	silent	c.342	p.G114	1.000	NULL	NULL	-	no_errors	C11orf58	HGNC	ENSG00000110696	151	1	0.65	137	20	12.74	-	-	-	G	16776441	T	G	16776441	2	3	232	1	0	0	0	0	0	0	0	1	1662	1683	59	5		5	C11orf58	11	16776441	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4241532	16776441	118230075	1633	17159										
PLEKHA7	0	genome.wustl.edu	37	chr11	16816095	16816095	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcactttcctcagctggggTgggtgaggtcggtacggcac	16	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	16816095	16816095	T	G	SNP	PLEKHA7	ENST00000530489	human	ensembl	69_37n	-1	known	missense	c.1577	p.H526P	0.004	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHA7	HGNC	ENSG00000166689	26	0	0	28	10	26.32	-	-	-	G	16816095	T	G	16816095	3	3	232	1	0	0	0	0	1	0	0	0	12135	1683	59	5	700	5	PLEKHA7	11	16816095	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	39654	16816095	118190421	1634	17160										
SAAL1	0	genome.wustl.edu	37	chr11	18112035	18112035	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catacaaacagtgcaataacAcctgcctacaaaaacaaaga	4	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	18112035	18112035	A	C	SNP	SAAL1	ENST00000524803	human	ensembl	69_37n	-1	known	missense	c.419	p.V140G	0.986	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	SAAL1	HGNC	ENSG00000166788	68	0	0	46	15	24.59	-	-	-	C	18112035	A	C	18112035	3	2	232	1	0	0	0	0	1	0	0	0	13887	159	6	5	1037	5	SAAL1	11	18112035	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1295940	18112035	116894481	1635	17161										
IGSF22	0	genome.wustl.edu	37	chr11	18738505	18738505	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctgtctggcgctctgtcAccttcacaggcttcatctct	8	15	6	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	18738505	18738505	A	C	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	missense	c.1016	p.V339G	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	126	0	0	191	46	19.17	-	-	-	C	18738505	A	C	18738505	3	2	232	1	0	0	0	0	1	0	0	0	7654	159	6	5	3020	5	IGSF22	11	18738505	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	626470	18738505	116268011	1636	17162										
NAV2	0	genome.wustl.edu	37	chr11	20089927	20089927	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaaagtttcagctttgaccAcccagctgacagcaaatgta	8	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	20089927	20089927	A	C	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.5134	p.T1712P	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	245	1	0.41	270	74	21.45	-	-	-	C	20089927	A	C	20089927	3	2	232	1	0	0	0	0	1	0	0	0	10256	159	6	5	5161	5	NAV2	11	20089927	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1351422	20089927	114916589	1637	17163										
NELL1	0	genome.wustl.edu	37	chr11	20968884	20968884	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaatatttggcttccagggTggagttttagtaaaaattac	9	5	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	20968884	20968884	T	G	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	silent	c.1074	p.G358	1.000	smart_VWF_C	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	243	1	0.41	199	36	15.25	-	-	-	G	20968884	T	G	20968884	2	3	232	1	0	0	0	0	0	0	0	1	10405	1683	59	5		5	NELL1	11	20968884	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	878957	20968884	114037632	1638	17164										
SLC5A12	0	genome.wustl.edu	37	chr11	26743254	26743254	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaaactgcaaagttcttcAcctccatattggaaagtatg	6	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	26743254	26743254	A	C	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.8	p.V3G	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	218	2	0.91	387	45	10.39	-	-	-	C	26743254	A	C	26743254	3	2	232	1	0	0	0	0	1	0	0	0	14753	159	6	5	1908	5	SLC5A12	11	26743254	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5774370	26743254	108263262	1639	17165										
KCNA4	0	genome.wustl.edu	37	chr11	30032939	30032939	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgctgctgaccattgccAcccccctgttgctgggccag	11	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	30032939	30032939	A	C	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	silent	c.1287	p.G429	0.996	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	187	0	0	256	31	10.76	-	-	-	C	30032939	A	C	30032939	2	2	232	1	0	0	0	0	0	0	0	1	8059	146	6	5		5	KCNA4	11	30032939	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3289685	30032939	104973577	1640	17166										
QSER1	0	genome.wustl.edu	37	chr11	32953656	32953656	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttagtttgttgccttcagcActtgggggatcccagcagac	11	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	32953656	32953656	A	C	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	silent	c.465	p.A155	0.988	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	251	0	0	265	31	10.47	-	-	-	C	32953656	A	C	32953656	2	2	232	1	0	0	0	0	0	0	0	1	12965	146	6	5		5	QSER1	11	32953656	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2920717	32953656	102052860	1641	17167										
HIPK3	0	genome.wustl.edu	37	chr11	33374870	33374870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtgctgcaccagtggcccAcctgttagcctctccgtgta	10	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	33374870	33374870	A	C	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	missense	c.3404	p.H1135P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	290	1	0.34	343	60	14.81	-	-	-	C	33374870	A	C	33374870	3	2	232	1	0	0	0	0	1	0	0	0	7169	159	6	5	3466	5	HIPK3	11	33374870	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	421214	33374870	101631646	1642	17168										
HIPK3	0	genome.wustl.edu	37	chr11	33375090	33375090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccactgagtccaacaaaActcagccagtatccatatat	4	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	33375090	33375090	A	C	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	missense	c.3624	p.K1208N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	220	1	0.45	249	33	11.7	-	-	-	C	33375090	A	C	33375090	3	2	232	1	0	0	0	0	1	0	0	0	7169	40	2	5	3686	5	HIPK3	11	33375090	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	220	33375090	101631426	1643	17169										
CD44	0	genome.wustl.edu	37	chr11	35227752	35227752	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcttcaacccaatctcacAccccatgggacgaggtcatc	6	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	35227752	35227752	A	C	SNP	CD44	ENST00000428726	human	ensembl	69_37n	1	known	missense	c.1376	p.H459P	1.000	NULL	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_CD44_antigen,prints_Link	-	no_errors	CD44	HGNC	ENSG00000026508	169	0	0	172	28	14	-	-	-	C	35227752	A	C	35227752	3	2	232	1	0	0	0	0	1	0	0	0	3046	159	6	5	1418	5	CD44	11	35227752	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1852662	35227752	99778764	1644	17170										
PAMR1	0	genome.wustl.edu	37	chr11	35457467	35457467	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcactagggatgcaggatggTgcccgcccactccacttccc	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	35457467	35457467	T	G	SNP	PAMR1	ENST00000278360	human	ensembl	69_37n	-1	known	silent	c.1368	p.A456	0.441	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_EGF-like,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PAMR1	HGNC	ENSG00000149090	188	0	0	196	45	18.6	-	-	-	G	35457467	T	G	35457467	2	3	232	1	0	0	0	0	0	0	0	1	11486	1683	59	5		5	PAMR1	11	35457467	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	229715	35457467	99549049	1645	17171										
TRIM44	0	genome.wustl.edu	37	chr11	35706850	35706850	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccgctatgatcgaattggTggaaaggttgaagttcaaga	14	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	35706850	35706850	T	G	SNP	TRIM44	ENST00000299413	human	ensembl	69_37n	1	known	missense	c.713	p.V238G	1.000	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM44	HGNC	ENSG00000166326	145	0	0	150	19	11.24	-	-	-	G	35706850	T	G	35706850	3	3	232	1	0	0	0	0	1	0	0	0	16615	1696	59	5	719	5	TRIM44	11	35706850	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	249383	35706850	99299666	1646	17172										
RAG1	0	genome.wustl.edu	37	chr11	36597190	36597190	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagaactgcgggatcgggTgaaaggggtctcagctaaac	16	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	36597190	36597190	T	G	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.2336	p.V779G	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	161	1	0.62	193	25	11.47	-	-	-	G	36597190	T	G	36597190	3	3	232	1	0	0	0	0	1	0	0	0	13086	1696	59	5	2338	5	RAG1	11	36597190	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	890340	36597190	98409326	1647	17173										
TTC17	0	genome.wustl.edu	37	chr11	43427132	43427132	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taccctagagtccctgttggTggggaattgccaacgtattt	11	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	43427132	43427132	T	G	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	silent	c.1548	p.G516	0.897	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	263	1	0.38	251	31	10.92	-	-	-	G	43427132	T	G	43427132	2	3	232	1	0	0	0	0	0	0	0	1	16781	1683	59	5		5	TTC17	11	43427132	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6829942	43427132	91579384	1648	17174										
EXT2	0	genome.wustl.edu	37	chr11	44135750	44135750	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagggccctgttggctggTggcggcttttctacgtggac	15	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	44135750	44135750	T	G	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	silent	c.741	p.G247	0.126	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	306	0	0	367	71	16.21	-	-	-	G	44135750	T	G	44135750	2	3	232	1	0	0	0	0	0	0	0	1	5361	1683	59	5		5	EXT2	11	44135750	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	708618	44135750	90870766	1649	17175										
PRDM11	0	genome.wustl.edu	37	chr11	45245978	45245978	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcactggaatctgcgaaggTggaagcccaccagttggccc	12	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	45245978	45245978	T	G	SNP	PRDM11	ENST00000263765	human	ensembl	69_37n	1	known	missense	c.1055	p.V352G	0.200	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485	232	1	0.43	245	29	10.47	-	-	-	G	45245978	T	G	45245978	3	3	232	1	0	0	0	0	1	0	0	0	12533	1696	59	5	1081	5	PRDM11	11	45245978	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1110228	45245978	89760538	1650	17176										
NR1H3	0	genome.wustl.edu	37	chr11	47283156	47283156	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgtcagcagcgctttgcccActtcactgagctggccatcg	10	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	47283156	47283156	A	C	SNP	NR1H3	ENST00000441012	human	ensembl	69_37n	1	known	missense	c.767	p.H256P	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	-	no_errors	NR1H3	HGNC	ENSG00000025434	62	0	0	111	15	11.9	-	-	-	C	47283156	A	C	47283156	3	2	232	1	0	0	0	0	1	0	0	0	10691	159	6	5	785	5	NR1H3	11	47283156	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2037178	47283156	87723360	1651	17177										
PSMC3	0	genome.wustl.edu	37	chr11	47444520	47444520	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggcaagacaatggcctccAccagctgccaggaggaagtc	12	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	47444520	47444520	A	C	SNP	PSMC3	ENST00000298852	human	ensembl	69_37n	-1	known	missense	c.596	p.V199G	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916	137	1	0.72	186	34	15.32	-	-	-	C	47444520	A	C	47444520	3	2	232	1	0	0	0	0	1	0	0	0	12767	159	6	5	747	5	PSMC3	11	47444520	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	161364	47444520	87561996	1652	17178										
FNBP4	0	genome.wustl.edu	37	chr11	47746098	47746098	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggggcagggggctcctcActtccctcatcctccatctc	9	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	47746098	47746098	A	C	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.2241	p.S747R	0.860	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	196	0	0	288	35	10.77	-	-	-	C	47746098	A	C	47746098	3	2	232	1	0	0	0	0	1	0	0	0	6013	156	6	5	832	5	FNBP4	11	47746098	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	301578	47746098	87260418	1653	17179										
FNBP4	0	genome.wustl.edu	37	chr11	47754065	47754065	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatgtcaaaggtgaaaggTgaaaaggggagaagagtgcg	18	2	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	47754065	47754065	T	G	SNP	FNBP4	ENST00000527894	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FNBP4	HGNC	ENSG00000109920	123	1	0.8	160	36	18.37	-	-	-	G	47754065	T	G	47754065	1	3	232	0	1	0	0	0	0	0	0	0	6013	1711	59	5		5	FNBP4	11	47754065	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7967	47754065	87252451	1654	17180										
PTPRJ	0	genome.wustl.edu	37	chr11	48146675	48146675	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggcacccgatacaatgccAccgtttattcccaagcagcg	8	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	48146675	48146675	A	C	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.1030	p.T344P	0.447	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	98	0	0	132	22	14.19	-	-	-	C	48146675	A	C	48146675	3	2	232	1	0	0	0	0	1	0	0	0	12887	159	6	5	1052	5	PTPRJ	11	48146675	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	392610	48146675	86859841	1655	17181										
OR4B1	0	genome.wustl.edu	37	chr11	48238444	48238444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagagtgtatgctttgtggTgtttctccccgtgtaccttg	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	48238444	48238444	T	G	SNP	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	missense	c.83	p.V28G	0.184	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	214	0	0	318	36	10.17	-	-	-	G	48238444	T	G	48238444	3	3	232	1	0	0	0	0	1	0	0	0	11117	1696	59	5	85	5	OR4B1	11	48238444	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	91769	48238444	86768072	1656	17182										
OR4C46	0	genome.wustl.edu	37	chr11	51515990	51515990	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaggcacaaagccctctccAcctgtgtctcccacatcacg	6	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	51515990	51515990	A	C	SNP	OR4C46	ENST00000328188	human	ensembl	69_37n	1	known	missense	c.709	p.T237P	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C46	HGNC	ENSG00000185926	158	1	0.63	98	23	18.55	-	-	-	C	51515990	A	C	51515990	3	2	232	1	0	0	0	0	1	0	0	0	11124	159	6	5	711	5	OR4C46	11	51515990	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3277546	51515990	83490526	1657	17183										
OR4A16	0	genome.wustl.edu	37	chr11	55111279	55111279	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcactgtggttgccaatggTggaataatttgtatggtcat	11	6	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55111279	55111279	T	G	SNP	OR4A16	ENST00000314721	human	ensembl	69_37n	1	known	silent	c.603	p.G201	0.108	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961	316	0	0	180	20	10	-	-	-	G	55111279	T	G	55111279	2	3	232	1	0	0	0	0	0	0	0	1	11114	1683	59	5		5	OR4A16	11	55111279	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3595289	55111279	79895237	1658	17184										
OR4A15	0	genome.wustl.edu	37	chr11	55135846	55135846	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcctcttcatgaattgatcAccatgaatcgtcgagtctgt	8	10	4	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55135846	55135846	A	C	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.487	p.T163P	0.163	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	368	0	0	261	33	11.19	-	-	-	C	55135846	A	C	55135846	3	2	232	1	0	0	0	0	1	0	0	0	11113	159	6	5	489	5	OR4A15	11	55135846	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24567	55135846	79870670	1659	17185										
OR4S2	0	genome.wustl.edu	37	chr11	55418918	55418918	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcactacttttgtgatgttcAccctgtgttgaaacttgcct	7	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55418918	55418918	A	C	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.539	p.H180P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	448	0	0	265	36	11.96	-	-	-	C	55418918	A	C	55418918	3	2	232	1	0	0	0	0	1	0	0	0	11156	159	6	5	541	5	OR4S2	11	55418918	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	283072	55418918	79587598	1660	17186										
OR4S2	0	genome.wustl.edu	37	chr11	55419088	55419088	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggcgcaaagccctctccAcctgtggctcccacattgcc	9	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55419088	55419088	A	C	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.709	p.T237P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	349	0	0	203	27	11.74	-	-	-	C	55419088	A	C	55419088	3	2	232	1	0	0	0	0	1	0	0	0	11156	159	6	5	711	5	OR4S2	11	55419088	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	170	55419088	79587428	1661	17187										
OR4C6	0	genome.wustl.edu	37	chr11	55433074	55433074	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtgctgcctaatggtaggAggggcttgggtggggggatt	21	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55433074	55433074	A	G	SNP	OR4C6	ENST00000314259	human	ensembl	69_37n	1	known	silent	c.432	p.G144	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903	301	1	0.33	237	31	11.57	-	-	-	G	55433074	A	G	55433074	2	3	232	1	0	0	0	0	0	0	0	1	11125	291	11	5		5	OR4C6	11	55433074	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13986	55433074	79573442	1662	17188										
OR4C6	0	genome.wustl.edu	37	chr11	55433430	55433430	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgaggcctgtggtcactcAccccatagacaaggcaatgg	11	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55433430	55433430	A	C	SNP	OR4C6	ENST00000314259	human	ensembl	69_37n	1	known	missense	c.788	p.H263P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903	300	1	0.33	206	30	12.71	-	-	-	C	55433430	A	C	55433430	3	2	232	1	0	0	0	0	1	0	0	0	11125	159	6	5	790	5	OR4C6	11	55433430	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	356	55433430	79573086	1663	17189										
OR5L1	0	genome.wustl.edu	37	chr11	55579660	55579660	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggcacaaagccttctccAcctgtgcttcccacctcaca	6	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55579660	55579660	A	C	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.718	p.T240P	0.999	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	182	1	0.54	108	28	20.44	-	-	-	C	55579660	A	C	55579660	3	2	232	1	0	0	0	0	1	0	0	0	11243	159	6	5	720	5	OR5L1	11	55579660	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	146230	55579660	79426856	1664	17190										
OR5L1	0	genome.wustl.edu	37	chr11	55579673	55579673	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctccacctgtgcttcccAcctcacagctatcactgtct	4	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55579673	55579673	A	C	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.731	p.H244P	0.999	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	177	0	0	99	30	23.26	-	-	-	C	55579673	A	C	55579673	3	2	232	1	0	0	0	0	1	0	0	0	11243	159	6	5	733	5	OR5L1	11	55579673	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	55579673	79426843	1665	17191										
OR5D18	0	genome.wustl.edu	37	chr11	55587718	55587718	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgctattctttcttgccAcctttaatgaaatcagcaca	6	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55587718	55587718	A	C	SNP	OR5D18	ENST00000333976	human	ensembl	69_37n	1	known	missense	c.613	p.T205P	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119	308	1	0.32	173	20	10.26	-	-	-	C	55587718	A	C	55587718	3	2	232	1	0	0	0	0	1	0	0	0	11230	159	6	5	615	5	OR5D18	11	55587718	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8045	55587718	79418798	1666	17192										
OR5L2	0	genome.wustl.edu	37	chr11	55594863	55594863	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtcagctctcggctccacAcccccgtgtactttttcctc	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55594863	55594863	A	C	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.169	p.T57P	0.018	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	597	2	0.33	365	100	21.51	-	-	-	C	55594863	A	C	55594863	3	2	232	1	0	0	0	0	1	0	0	0	11244	159	6	5	171	5	OR5L2	11	55594863	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7145	55594863	79411653	1667	17193										
OR5L2	0	genome.wustl.edu	37	chr11	55595347	55595347	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgatcatcctcacctcctAcctgctaattctcaccacta	2	17	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55595347	55595347	A	C	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.653	p.Y218S	0.993	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	293	3	1	227	30	11.63	-	-	-	C	55595347	A	C	55595347	3	2	232	1	0	0	0	0	1	0	0	0	11244	391	14	5	655	5	OR5L2	11	55595347	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	484	55595347	79411169	1668	17194										
OR5L2	0	genome.wustl.edu	37	chr11	55595412	55595412	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggcacaaagctttctccAcctgtgcctcccacctcaca	6	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55595412	55595412	A	C	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.718	p.T240P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	277	0	0	175	60	25.42	-	-	-	C	55595412	A	C	55595412	3	2	232	1	0	0	0	0	1	0	0	0	11244	159	6	5	720	5	OR5L2	11	55595412	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	65	55595412	79411104	1669	17195										
OR5L2	0	genome.wustl.edu	37	chr11	55595425	55595425	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttctccacctgtgcctcccAcctcacagccatcactgtct	4	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55595425	55595425	A	C	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.731	p.H244P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	275	1	0.36	183	52	21.94	-	-	-	C	55595425	A	C	55595425	3	2	232	1	0	0	0	0	1	0	0	0	11244	159	6	5	733	5	OR5L2	11	55595425	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	55595425	79411091	1670	17196										
OR5D16	0	genome.wustl.edu	37	chr11	55606427	55606427	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtattttttcctcaaccAcctctcctttgtggatttct	4	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55606427	55606427	A	C	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.200	p.H67P	0.971	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	526	2	0.38	325	58	15.1	-	-	-	C	55606427	A	C	55606427	3	2	232	1	0	0	0	0	1	0	0	0	11229	159	6	5	202	5	OR5D16	11	55606427	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11002	55606427	79400089	1671	17197										
OR5D16	0	genome.wustl.edu	37	chr11	55606978	55606978	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcccacctgactgccatcAccatcttccatggcaccatc	4	20	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55606978	55606978	A	C	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.751	p.T251P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	249	1	0.4	168	33	16.26	-	-	-	C	55606978	A	C	55606978	3	2	232	1	0	0	0	0	1	0	0	0	11229	159	6	5	753	5	OR5D16	11	55606978	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	551	55606978	79399538	1672	17198										
OR5D16	0	genome.wustl.edu	37	chr11	55606993	55606993	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcaccatcttccatggcAccatcctcttcctctactgt	3	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55606993	55606993	A	C	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.766	p.T256P	0.283	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	232	0	0	151	30	16.39	-	-	-	C	55606993	A	C	55606993	3	2	232	1	0	0	0	0	1	0	0	0	11229	159	6	5	768	5	OR5D16	11	55606993	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15	55606993	79399523	1673	17199										
OR5AS1	0	genome.wustl.edu	37	chr11	55798440	55798440	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattttttctgtgatatcccAcctcttctggctttatcatg	5	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55798440	55798440	A	C	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	silent	c.546	p.P182	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	405	2	0.49	212	38	15.2	-	-	-	C	55798440	A	C	55798440	2	2	232	1	0	0	0	0	0	0	0	1	11219	146	6	5		5	OR5AS1	11	55798440	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	191447	55798440	79208076	1674	17200										
OR5AS1	0	genome.wustl.edu	37	chr11	55798639	55798639	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcccacctcatagcagtcAccttattctatggagcgctc	6	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55798639	55798639	A	C	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	missense	c.745	p.T249P	0.049	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	272	1	0.36	129	23	15.03	-	-	-	C	55798639	A	C	55798639	3	2	232	1	0	0	0	0	1	0	0	0	11219	159	6	5	747	5	OR5AS1	11	55798639	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	199	55798639	79207877	1675	17201										
OR8H2	0	genome.wustl.edu	37	chr11	55872856	55872856	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgggtactgctgaatgttAccttctctcctcaatggccc	8	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55872856	55872856	A	C	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.338	p.Y113S	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	530	2	0.38	368	51	12.14	-	-	-	C	55872856	A	C	55872856	3	2	232	1	0	0	0	0	1	0	0	0	11311	391	14	5	340	5	OR8H2	11	55872856	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	74217	55872856	79133660	1676	17202										
OR8H2	0	genome.wustl.edu	37	chr11	55873134	55873134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattcattattgttggttccAccctgatggtgtcccttttc	7	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55873134	55873134	A	C	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.616	p.T206P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	372	1	0.27	209	39	15.73	-	-	-	C	55873134	A	C	55873134	3	2	232	1	0	0	0	0	1	0	0	0	11311	159	6	5	618	5	OR8H2	11	55873134	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	278	55873134	79133382	1677	17203										
OR8H3	0	genome.wustl.edu	37	chr11	55890464	55890464	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tattcattatcgctggttccAccctgatggtgtcccttatc	7	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55890464	55890464	A	C	SNP	OR8H3	ENST00000313472	human	ensembl	69_37n	1	known	missense	c.616	p.T206P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H3	HGNC	ENSG00000181761	312	0	0	200	48	19.28	-	-	-	C	55890464	A	C	55890464	3	2	232	1	0	0	0	0	1	0	0	0	11312	159	6	5	618	5	OR8H3	11	55890464	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17330	55890464	79116052	1678	17204										
OR5J2	0	genome.wustl.edu	37	chr11	55944811	55944811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagacagcaagccttctccAcctgtgcctctcacctgact	7	17	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	55944811	55944811	A	C	SNP	OR5J2	ENST00000312298	human	ensembl	69_37n	1	known	missense	c.718	p.T240P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	161	0	0	98	21	17.65	-	-	-	C	55944811	A	C	55944811	3	2	232	1	0	0	0	0	1	0	0	0	11238	159	6	5	720	5	OR5J2	11	55944811	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	54347	55944811	79061705	1679	17205										
OR5T1	0	genome.wustl.edu	37	chr11	56043561	56043561	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtattcagtgagcatgtcAcccagagtctatgtgccact	9	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56043561	56043561	A	C	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	silent	c.447	p.S149	0.101	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	373	0	0	307	37	10.69	-	-	-	C	56043561	A	C	56043561	2	2	232	1	0	0	0	0	0	0	0	1	11254	146	6	5		5	OR5T1	11	56043561	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	98750	56043561	78962955	1680	17206										
OR8J1	0	genome.wustl.edu	37	chr11	56127867	56127867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgggcatcatcaccctcAccagtgttgactctcgactt	7	15	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56127867	56127867	A	C	SNP	OR8J1	ENST00000303039	human	ensembl	69_37n	1	known	missense	c.145	p.T49P	0.738	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8J1	HGNC	ENSG00000172487	298	0	0	229	28	10.89	-	-	-	C	56127867	A	C	56127867	3	2	232	1	0	0	0	0	1	0	0	0	11314	159	6	5	147	5	OR8J1	11	56127867	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	84306	56127867	78878649	1681	17207										
OR5R1	0	genome.wustl.edu	37	chr11	56184991	56184991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccatatgggagccacaggTggaaatggctttgtgttgcc	13	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56184991	56184991	T	G	SNP	OR5R1	ENST00000312253	human	ensembl	69_37n	-1	known	missense	c.718	p.T240P	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	234	0	0	111	19	14.5	-	-	-	G	56184991	T	G	56184991	3	3	232	1	0	0	0	0	1	0	0	0	11253	1696	59	5	258	5	OR5R1	11	56184991	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	57124	56184991	78821525	1682	17208										
OR5M11	0	genome.wustl.edu	37	chr11	56309992	56309992	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagtcccataaaacagggTgacagccatcatatgggaac	11	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56309992	56309992	T	G	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	missense	c.742	p.T248P	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	220	1	0.45	136	24	15	-	-	-	G	56309992	T	G	56309992	3	3	232	1	0	0	0	0	1	0	0	0	11247	1696	59	5	178	5	OR5M11	11	56309992	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	125001	56309992	78696524	1683	17209										
OR5M1	0	genome.wustl.edu	37	chr11	56380818	56380818	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatacatgggtgtttgcaggTgggaattggtcctgatcagc	14	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56380818	56380818	T	G	SNP	OR5M1	ENST00000526538	human	ensembl	69_37n	-1	known	missense	c.161	p.H54P	0.025	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M1	HGNC	ENSG00000255012	229	0	0	219	31	12.4	-	-	-	G	56380818	T	G	56380818	3	3	232	1	0	0	0	0	1	0	0	0	11245	1696	59	5	790	5	OR5M1	11	56380818	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	70826	56380818	78625698	1684	17210										
OR5AR1	0	genome.wustl.edu	37	chr11	56431561	56431561	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcgacccctccactatagcAccttcatgtccaagcaggtc	7	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56431561	56431561	A	C	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	359	3	0.82	241	41	14.49	-	-	-	C	56431561	A	C	56431561	3	2	232	1	0	0	0	0	1	0	0	0	11218	159	6	5	402	5	OR5AR1	11	56431561	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	50743	56431561	78574955	1685	17211										
OR5AR1	0	genome.wustl.edu	37	chr11	56431789	56431789	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggcttcattgaattcagcAccatcctcatcatcttcatc	5	13	6	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56431789	56431789	A	C	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	1	known	missense	c.628	p.T210P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	274	0	0	163	39	19.21	-	-	-	C	56431789	A	C	56431789	3	2	232	1	0	0	0	0	1	0	0	0	11218	159	6	5	630	5	OR5AR1	11	56431789	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	228	56431789	78574727	1686	17212										
OR5AR1	0	genome.wustl.edu	37	chr11	56431879	56431879	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgccttaaggctttctccAcctgcgggtctcaccttact	8	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56431879	56431879	A	C	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	1	known	missense	c.718	p.T240P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	204	1	0.49	117	28	19.31	-	-	-	C	56431879	A	C	56431879	3	2	232	1	0	0	0	0	1	0	0	0	11218	159	6	5	720	5	OR5AR1	11	56431879	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	90	56431879	78574637	1687	17213										
OR9G1	0	genome.wustl.edu	37	chr11	56468591	56468591	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctccacatgctcctcccAcctgacctctgtcactttat	3	18	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56468591	56468591	A	C	SNP	OR9G1	ENST00000312153	human	ensembl	69_37n	1	known	missense	c.728	p.H243P	1.000	pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914	566	2	0.35	380	71	15.57	-	-	-	C	56468591	A	C	56468591	3	2	232	1	0	0	0	0	1	0	0	0	11323	159	6	5	730	5	OR9G1	11	56468591	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36712	56468591	78537925	1688	17214										
LRRC55	0	genome.wustl.edu	37	chr11	56949383	56949383	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accacatgctcagaagccccAccttcacagacgctggcccc	7	19	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	56949383	56949383	A	C	SNP	LRRC55	ENST00000497933	human	ensembl	69_37n	1	known	missense	c.16	p.T6P	0.997	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908	51	0	0	65	15	18.29	-	-	-	C	56949383	A	C	56949383	3	2	232	1	0	0	0	0	1	0	0	0	9077	159	6	5	18	5	LRRC55	11	56949383	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	480792	56949383	78057133	1689	17215										
CTNND1	0	genome.wustl.edu	37	chr11	57569489	57569489	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagggcatcccagtactggTgggattgttagaccatccca	11	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	57569489	57569489	T	G	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	missense	c.1241	p.V414G	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	277	0	0	221	26	10.48	-	-	-	G	57569489	T	G	57569489	3	3	232	1	0	0	0	0	1	0	0	0	4051	1696	59	5	1259	5	CTNND1	11	57569489	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	620106	57569489	77437027	1690	17216										
OR6Q1	0	genome.wustl.edu	37	chr11	57798542	57798542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctcaccatgtacctgttcAccttggtggagaatttggcc	9	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	57798542	57798542	A	C	SNP	OR6Q1	ENST00000302622	human	ensembl	69_37n	1	known	missense	c.118	p.T40P	0.327	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6Q1	HGNC	ENSG00000172381	341	2	0.58	264	32	10.81	-	-	-	C	57798542	A	C	57798542	3	2	232	1	0	0	0	0	1	0	0	0	11281	159	6	5	120	5	OR6Q1	11	57798542	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	229053	57798542	77207974	1691	17217										
OR6Q1	0	genome.wustl.edu	37	chr11	57798588	57798588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttagtggtgggtttggaccAccgactacggagacccatgt	13	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	57798588	57798588	A	C	SNP	OR6Q1	ENST00000302622	human	ensembl	69_37n	1	known	missense	c.164	p.H55P	0.519	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6Q1	HGNC	ENSG00000172381	321	1	0.31	231	31	11.83	-	-	-	C	57798588	A	C	57798588	3	2	232	1	0	0	0	0	1	0	0	0	11281	159	6	5	166	5	OR6Q1	11	57798588	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	57798588	77207928	1692	17218										
OR9I1	0	genome.wustl.edu	37	chr11	57886805	57886805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccacattcccaagaagggTgactaggtagaaactcagaa	9	11	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	57886805	57886805	T	G	SNP	OR9I1	ENST00000302610	human	ensembl	69_37n	-1	known	missense	c.112	p.T38P	0.978	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9I1	HGNC	ENSG00000172377	212	1	0.47	146	19	11.52	-	-	-	G	57886805	T	G	57886805	3	3	232	1	0	0	0	0	1	0	0	0	11326	1696	59	5	836	5	OR9I1	11	57886805	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	88217	57886805	77119711	1693	17219										
OR9Q2	0	genome.wustl.edu	37	chr11	57958362	57958362	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccagcccctgctttatgtcAccatcataaccgagaaggcc	8	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	57958362	57958362	A	C	SNP	OR9Q2	ENST00000311591	human	ensembl	69_37n	1	known	missense	c.400	p.T134P	0.005	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9Q2	HGNC	ENSG00000186513	193	1	0.51	134	24	15.19	-	-	-	C	57958362	A	C	57958362	3	2	232	1	0	0	0	0	1	0	0	0	11329	159	6	5	402	5	OR9Q2	11	57958362	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	71557	57958362	77048154	1694	17220										
LPXN	0	genome.wustl.edu	37	chr11	58317479	58317479	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcgcagtaagcacagcgTggagaaaaaagttggtggta	15	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	58317479	58317479	T	G	SNP	LPXN	ENST00000528954	human	ensembl	69_37n	-1	known	silent	c.642	p.P214	0.005	pirsf_Leupaxin,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	239	0	0	213	35	14.11	-	-	-	G	58317479	T	G	58317479	2	3	232	1	0	0	0	0	0	0	0	1	8995	1683	59	5		5	LPXN	11	58317479	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	359117	58317479	76689037	1695	17221										
GLYAT	0	genome.wustl.edu	37	chr11	58477514	58477514	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggccccaggagacagcaggTgggaaaggtctgaatgcagc	16	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	58477514	58477514	T	G	SNP	GLYAT	ENST00000344743	human	ensembl	69_37n	-1	known	missense	c.616	p.T206P	0.023	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124	95	0	0	82	22	21.15	-	-	-	G	58477514	T	G	58477514	3	3	232	1	0	0	0	0	1	0	0	0	6531	1696	59	5	278	5	GLYAT	11	58477514	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	160035	58477514	76529002	1696	17222										
GLYATL1	0	genome.wustl.edu	37	chr11	58722668	58722668	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcttcaagaaagtttaggTgaggggataagagtggctac	15	4	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	58722668	58722668	T	G	SNP	GLYATL1	ENST00000300079	human	ensembl	69_37n	1	known	silent	c.426	p.G142	0.002	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840	266	0	0	132	19	12.42	-	-	-	G	58722668	T	G	58722668	2	3	232	1	0	0	0	0	0	0	0	1	6532	1683	59	5		5	GLYATL1	11	58722668	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	245154	58722668	76283848	1697	17223										
FAM111A	0	genome.wustl.edu	37	chr11	58919898	58919898	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgacaccattttagaaagcAcccagccagttgatgaatta	7	9	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	58919898	58919898	A	C	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	missense	c.757	p.T253P	0.733	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	187	0	0	130	23	14.94	-	-	-	C	58919898	A	C	58919898	3	2	232	1	0	0	0	0	1	0	0	0	5439	159	6	5	763	5	FAM111A	11	58919898	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	197230	58919898	76086618	1698	17224										
OR5AN1	0	genome.wustl.edu	37	chr11	59132345	59132345	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctattcatccatcatgtcAcccaccctctgtgtttggat	5	14	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	59132345	59132345	A	C	SNP	OR5AN1	ENST00000313940	human	ensembl	69_37n	1	known	silent	c.414	p.S138	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AN1	HGNC	ENSG00000176495	270	2	0.73	199	31	13.36	-	-	-	C	59132345	A	C	59132345	2	2	232	1	0	0	0	0	0	0	0	1	11216	146	6	5		5	OR5AN1	11	59132345	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	212447	59132345	75874171	1699	17225										
OR4D10	0	genome.wustl.edu	37	chr11	59245689	59245689	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtctatgcccggcccttcActgccctccccatggataag	8	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	59245689	59245689	A	C	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.787	p.T263P	0.716	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	247	0	0	237	31	11.57	-	-	-	C	59245689	A	C	59245689	3	2	232	1	0	0	0	0	1	0	0	0	11127	159	6	5	789	5	OR4D10	11	59245689	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	113344	59245689	75760827	1700	17226										
OR4D11	0	genome.wustl.edu	37	chr11	59271868	59271868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaaaaggccatctctgtcAccttcactgtcatctcccct	5	16	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	59271868	59271868	A	C	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	missense	c.820	p.T274P	0.941	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	233	1	0.43	191	38	16.45	-	-	-	C	59271868	A	C	59271868	3	2	232	1	0	0	0	0	1	0	0	0	11128	159	6	5	822	5	OR4D11	11	59271868	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26179	59271868	75734648	1701	17227										
PATL1	0	genome.wustl.edu	37	chr11	59423499	59423499	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacactaggaggaaaagggTgacccaggagggaagagttc	16	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	59423499	59423499	T	G	SNP	PATL1	ENST00000300146	human	ensembl	69_37n	-1	known	missense	c.743	p.H248P	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889	33	0	0	19	9	32.14	-	-	-	G	59423499	T	G	59423499	3	3	232	1	0	0	0	0	1	0	0	0	11548	1696	59	5	1621	5	PATL1	11	59423499	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	151631	59423499	75583017	1702	17228										
MRPL16	0	genome.wustl.edu	37	chr11	59574084	59574084	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcaaattcacaacgcccAcccatctctacaacaaggcg	4	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	59574084	59574084	A	C	SNP	MRPL16	ENST00000300151	human	ensembl	69_37n	-1	known	silent	c.492	p.G164	0.626	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	-	no_errors	MRPL16	HGNC	ENSG00000166902	117	1	0.84	89	17	16.04	-	-	-	C	59574084	A	C	59574084	2	2	232	1	0	0	0	0	0	0	0	1	9853	146	6	5		5	MRPL16	11	59574084	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	150585	59574084	75432432	1703	17229										
MS4A6E	0	genome.wustl.edu	37	chr11	60105378	60105378	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttcttatgattatcattcAccttacaccatggactgcca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	60105378	60105378	A	C	SNP	MS4A6E	ENST00000300182	human	ensembl	69_37n	1	known	silent	c.312	p.S104	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A6E	HGNC	ENSG00000166926	136	1	0.72	69	21	23.33	-	-	-	C	60105378	A	C	60105378	2	2	232	1	0	0	0	0	0	0	0	1	9937	146	6	5		5	MS4A6E	11	60105378	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	531294	60105378	74901138	1704	17230	186	2								
MS4A6E	0	genome.wustl.edu	37	chr11	60105385	60105385	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgattatcattcaccttacAccatggactgccatagagcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	60105385	60105385	A	C	SNP	MS4A6E	ENST00000300182	human	ensembl	69_37n	1	known	missense	c.319	p.T107P	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A6E	HGNC	ENSG00000166926	142	0	0	69	18	20.69	-	-	-	C	60105385	A	C	60105385	3	2	232	1	0	0	0	0	1	0	0	0	9937	159	6	5	325	5	MS4A6E	11	60105385	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7	60105385	74901131	1705	17231	186	2								
MS4A10	0	genome.wustl.edu	37	chr11	60557942	60557942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccaagctcctggctccacAccagcacgagaagtcccaga	9	17	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	60557942	60557942	A	C	SNP	MS4A10	ENST00000308287	human	ensembl	69_37n	1	known	missense	c.134	p.H45P	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689	57	0	0	39	7	15.22	-	-	-	C	60557942	A	C	60557942	3	2	232	1	0	0	0	0	1	0	0	0	9927	159	6	5	136	5	MS4A10	11	60557942	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	452557	60557942	74448574	1706	17232										
ZP1	0	genome.wustl.edu	37	chr11	60638520	60638520	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatcacactggccaacatccAcctggcctatgcccccacca	6	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	60638520	60638520	A	C	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	missense	c.917	p.H306P	0.059	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	70	0	0	21	7	25	-	-	-	C	60638520	A	C	60638520	3	2	232	1	0	0	0	0	1	0	0	0	18308	159	6	5	935	5	ZP1	11	60638520	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	80578	60638520	74367996	1707	17233										
ZP1	0	genome.wustl.edu	37	chr11	60638537	60638537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacctggcctatgcccccAccagctgctccccaacacag	6	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	60638537	60638537	A	C	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	missense	c.934	p.T312P	0.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	74	0	0	22	10	31.25	-	-	-	C	60638537	A	C	60638537	3	2	232	1	0	0	0	0	1	0	0	0	18308	159	6	5	952	5	ZP1	11	60638537	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17	60638537	74367979	1708	17234										
AHNAK	0	genome.wustl.edu	37	chr11	62285137	62285137	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaacactcaaatgcccttcAccaaggctgatgtctggggc	9	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62285137	62285137	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.16752	p.G5584	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	379	2	0.52	268	30	10.03	-	-	-	C	62285137	A	C	62285137	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62285137	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1646600	62285137	72721379	1709	17235			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62285314	62285314	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttctgaacctttcagaccAcctttgatttcaggcccaga	6	13	3	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62285314	62285314	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.16575	p.G5525	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	310	0	0	201	40	16.6	-	-	-	C	62285314	A	C	62285314	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62285314	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	177	62285314	72721202	1710	17236			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62287541	62287541	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgaatttgggcattttcAccttgggcatcttcaggtgc	11	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62287541	62287541	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.14348	p.V4783G	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	408	1	0.24	201	28	12.12	-	-	-	C	62287541	A	C	62287541	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	3444	5	AHNAK	11	62287541	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2227	62287541	72718975	1711	17237			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62289218	62289218	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcaggaacatcaatgtccAccttgggtcctgagacgtca	9	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62289218	62289218	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.12671	p.V4224G	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	456	4	0.86	245	35	12.46	-	-	-	C	62289218	A	C	62289218	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	5121	5	AHNAK	11	62289218	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1677	62289218	72717298	1712	17238			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62289701	62289701	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgaatttgggcattttcAccttgggcatcttcaggtgc	11	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62289701	62289701	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.12188	p.V4063G	0.487	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	352	1	0.28	165	29	14.87	-	-	-	C	62289701	A	C	62289701	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	5604	5	AHNAK	11	62289701	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	483	62289701	72716815	1713	17239			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62290148	62290148	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctggggcattaatatccActttggggcctttaatatcc	8	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62290148	62290148	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.11741	p.V3914G	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	407	1	0.24	193	24	11.06	-	-	-	C	62290148	A	C	62290148	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	6051	5	AHNAK	11	62290148	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	447	62290148	72716368	1714	17240			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62290189	62290189	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtcaggaacttgcatgtcAccttccacttttggcagaga	9	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62290189	62290189	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.11700	p.G3900	0.997	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	396	2	0.5	194	29	13	-	-	-	C	62290189	A	C	62290189	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62290189	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	41	62290189	72716327	1715	17241			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62290469	62290469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgaacttgggcattttcAccttgggcatcttcaggtgc	11	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62290469	62290469	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.11420	p.V3807G	0.957	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	392	3	0.76	219	39	15.06	-	-	-	C	62290469	A	C	62290469	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	6372	5	AHNAK	11	62290469	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	280	62290469	72716047	1716	17242			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62292535	62292535	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgtcaggaactttcatgtcAccttccacttttggcagaga	8	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62292535	62292535	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.9354	p.G3118	0.972	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	373	2	0.53	201	33	14.04	-	-	-	C	62292535	A	C	62292535	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62292535	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2066	62292535	72713981	1717	17243			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62292568	62292568	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagagacacatccatgtcAcccttcactttgggaccttt	8	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62292568	62292568	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.9321	p.G3107	0.011	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	371	0	0	198	23	10.31	-	-	-	C	62292568	A	C	62292568	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62292568	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	33	62292568	72713948	1718	17244			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62292919	62292919	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttcagggcccttgaggtcAccttccactttgggcagaga	11	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62292919	62292919	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.8970	p.G2990	0.466	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	265	1	0.38	161	27	14.36	-	-	-	C	62292919	A	C	62292919	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62292919	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	351	62292919	72713597	1719	17245			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62293310	62293310	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacctttcagatctccctctAccttagggcctgtaacatcc	6	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62293310	62293310	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.8579	p.V2860G	0.004	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	239	0	0	140	30	17.65	-	-	-	C	62293310	A	C	62293310	3	2	232	1	0	0	0	0	1	0	0	0	414	391	14	5	9213	5	AHNAK	11	62293310	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	391	62293310	72713206	1720	17246			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62294071	62294071	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttcggggcccttgaggtcAccttccactttgggcagaga	12	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62294071	62294071	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.7818	p.G2606	0.103	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	273	1	0.36	163	33	16.84	-	-	-	C	62294071	A	C	62294071	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62294071	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	761	62294071	72712445	1721	17247			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62295256	62295256	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatctggcactttcatttcAccttctaccttgggaacaga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62295256	62295256	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.6633	p.G2211	0.980	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	369	0	0	235	43	15.36	-	-	-	C	62295256	A	C	62295256	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62295256	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1185	62295256	72711260	1722	17248	187	2	11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62295263	62295263	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcactttcatttcaccttctAccttgggaacagacacatcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62295263	62295263	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.6626	p.V2209G	0.135	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	349	1	0.28	246	39	13.54	-	-	-	C	62295263	A	C	62295263	3	2	232	1	0	0	0	0	1	0	0	0	414	391	14	5	11166	5	AHNAK	11	62295263	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7	62295263	72711253	1723	17249	187	2	11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62296856	62296856	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcactttcatttcaccttctAccttgggcacagacacatcc	5	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62296856	62296856	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.5033	p.V1678G	0.993	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	259	0	0	165	28	14.43	-	-	-	C	62296856	A	C	62296856	3	2	232	1	0	0	0	0	1	0	0	0	414	391	14	5	12759	5	AHNAK	11	62296856	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1593	62296856	72709660	1724	17250			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62297351	62297351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgaacttgggcatttttAccttgggcatcttcaggtgc	11	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62297351	62297351	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.4538	p.V1513G	0.242	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	246	0	0	162	23	12.23	-	-	-	C	62297351	A	C	62297351	3	2	232	1	0	0	0	0	1	0	0	0	414	391	14	5	13254	5	AHNAK	11	62297351	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	495	62297351	72709165	1725	17251			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62297839	62297839	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatctggcactttcatttcAccttctacctcaggcaagga	6	13	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62297839	62297839	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.4050	p.G1350	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	261	1	0.38	151	23	13.22	-	-	-	C	62297839	A	C	62297839	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62297839	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	488	62297839	72708677	1726	17252			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62298223	62298223	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatctggcactttcatttcAccttctaccttgggcacaga	6	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62298223	62298223	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.3666	p.G1222	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	276	1	0.36	195	30	13.27	-	-	-	C	62298223	A	C	62298223	2	2	232	1	0	0	0	0	0	0	0	1	414	146	6	5		5	AHNAK	11	62298223	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	384	62298223	72708293	1727	17253			11	41		20	19	13316	N	A	3.706835e-15
AHNAK	0	genome.wustl.edu	37	chr11	62298452	62298452	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttaggcaagttcacatccActtctgggccctcgcctttg	8	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62298452	62298452	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.3437	p.V1146G	0.984	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	150	0	0	107	20	15.75	-	-	-	C	62298452	A	C	62298452	3	2	232	1	0	0	0	0	1	0	0	0	414	159	6	5	14355	5	AHNAK	11	62298452	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	229	62298452	72708064	1728	17254			11	41		20	19	13316	N	A	3.706835e-15
EML3	0	genome.wustl.edu	37	chr11	62376502	62376502	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggaccccctgggcctccTccaggccggtacagcaccac	10	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62376502	62376502	T	C	SNP	EML3	ENST00000394776	human	ensembl	69_37n	-1	novel	missense	c.844	p.R282G	0.998	superfamily_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EML3	HGNC	ENSG00000149499	74	0	0	38	10	20.83	-	-	-	C	62376502	T	C	62376502	3	2	232	1	0	0	0	0	1	0	0	0	5135	1538	54	5	1893	5	EML3	11	62376502	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	78050	62376502	72630014	1729	17255										
GANAB	0	genome.wustl.edu	37	chr11	62393587	62393587	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccagcccctattatcaccAcccgctcaatccagattggt	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62393587	62393587	A	C	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.2741	p.V914G	0.997	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	374	2	0.53	304	58	15.89	-	-	-	C	62393587	A	C	62393587	3	2	232	1	0	0	0	0	1	0	0	0	6283	159	6	5	167	5	GANAB	11	62393587	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17085	62393587	72612929	1730	17256										
INTS5	0	genome.wustl.edu	37	chr11	62414522	62414522	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcgaaggagagtggacggTgaaggtgcctggaaacggcc	18	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62414522	62414522	T	G	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	silent	c.3030	p.S1010	0.411	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	66	0	0	22	14	38.89	-	-	-	G	62414522	T	G	62414522	2	3	232	1	0	0	0	0	0	0	0	1	7835	1683	59	5		5	INTS5	11	62414522	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	20935	62414522	72591994	1731	17257										
POLR2G	0	genome.wustl.edu	37	chr11	62530364	62530364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctttgtaattgctgtcaccAccattgacaatattggtgct	8	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62530364	62530364	A	C	SNP	POLR2G	ENST00000301788	human	ensembl	69_37n	1	known	missense	c.148	p.T50P	1.000	pfam_RNA_pol_Rpb7_N,superfamily_RNA_pol_Rpb7_N	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_RNA_pol_Rpb7_N,pfam_RNA_pol_III_Rbc25,superfamily_NA-bd_OB-fold-like,superfamily_RNA_pol_Rpb7_N,smart_RNA-binding_domain_S1	-	no_errors	POLR2G	HGNC	ENSG00000168002	27	0	0	61	12	16.44	-	-	-	C	62530364	A	C	62530364	3	2	232	1	0	0	0	0	1	0	0	0	12294	159	6	5	158	5	POLR2G	11	62530364	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	115842	62530364	72476152	1732	17258										
TAF6L	0	genome.wustl.edu	37	chr11	62545602	62545602	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgagacagctgtcagaggTggctgccggggtcctgcatg	17	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62545602	62545602	T	G	SNP	TAF6L	ENST00000294168	human	ensembl	69_37n	1	known	splice_site	c.385+2	e3+2	1.000	-	-	-	no_errors	TAF6L	HGNC	ENSG00000162227	33	0	0	30	4	11.11	-	-	-	G	62545602	T	G	62545602	5	3	232	1	0	0	0	0	0	0	1	0	15623	1710	59	5	397	5	TAF6L	11	62545602	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	15238	62545602	72460914	1733	17259										
NXF1	0	genome.wustl.edu	37	chr11	62571388	62571388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttccttcaccatatttccAccggaagggaccccggcctt	8	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62571388	62571388	A	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.91	p.W31G	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	227	2	0.87	140	22	13.58	-	-	-	C	62571388	A	C	62571388	3	2	232	1	0	0	0	0	1	0	0	0	10855	159	6	5	1903	5	NXF1	11	62571388	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	25786	62571388	72435128	1734	17260										
SLC22A6	0	genome.wustl.edu	37	chr11	62749365	62749365	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagaccagtagctgcaggTggcgccagtggggcacagcg	17	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62749365	62749365	T	G	SNP	SLC22A6	ENST00000377871	human	ensembl	69_37n	-1	known	missense	c.746	p.H249P	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901	32	0	0	27	10	27.03	-	-	-	G	62749365	T	G	62749365	3	3	232	1	0	0	0	0	1	0	0	0	14547	1696	59	5	973	5	SLC22A6	11	62749365	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	177977	62749365	72257151	1735	17261										
SLC22A25	0	genome.wustl.edu	37	chr11	62951267	62951267	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgttgttgataatgagccAccgagcagactctgccagcc	10	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	62951267	62951267	A	C	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	missense	c.853	p.W285G	0.994	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	258	0	0	170	33	16.18	-	-	-	C	62951267	A	C	62951267	3	2	232	1	0	0	0	0	1	0	0	0	14543	159	6	5	810	5	SLC22A25	11	62951267	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	201902	62951267	72055249	1736	17262										
SLC22A9	0	genome.wustl.edu	37	chr11	63137916	63137916	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagaatctccttctcatccAccatcgtgactgaggtaaga	7	12	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	63137916	63137916	A	C	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	1	known	missense	c.388	p.T130P	0.979	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	182	1	0.54	155	19	10.92	-	-	-	C	63137916	A	C	63137916	3	2	232	1	0	0	0	0	1	0	0	0	14550	159	6	5	390	5	SLC22A9	11	63137916	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	186649	63137916	71868600	1737	17263										
RARRES3	0	genome.wustl.edu	37	chr11	63313622	63313622	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagctgcttgctttgcaggTggaaaaggccaaggttgaag	14	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	63313622	63313622	T	G	SNP	RARRES3	ENST00000255688	human	ensembl	69_37n	1	known	missense	c.389	p.V130G	0.020	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321	137	1	0.72	120	17	12.32	-	-	-	G	63313622	T	G	63313622	3	3	232	1	0	0	0	0	1	0	0	0	13140	1710	59	5	403	5	RARRES3	11	63313622	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	175706	63313622	71692894	1738	17264										
MARK2	0	genome.wustl.edu	37	chr11	63667415	63667415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggcttcagcaatgaattcAcctttgggaacaagctggac	10	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	63667415	63667415	A	C	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	missense	c.601	p.T201P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	273	0	0	167	25	13.02	-	-	-	C	63667415	A	C	63667415	3	2	232	1	0	0	0	0	1	0	0	0	9384	159	6	5	631	5	MARK2	11	63667415	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	353793	63667415	71339101	1739	17265										
MARK2	0	genome.wustl.edu	37	chr11	63667506	63667506	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaatatgatggacccgaggTggatgtgtggagcctaggag	16	5	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	63667506	63667506	T	G	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	missense	c.692	p.V231G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	256	1	0.39	185	27	12.68	-	-	-	G	63667506	T	G	63667506	3	3	232	1	0	0	0	0	1	0	0	0	9384	1696	59	5	722	5	MARK2	11	63667506	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	91	63667506	71339010	1740	17266										
SPDYC	0	genome.wustl.edu	37	chr11	64940421	64940421	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggtcaaaaacgcctggggTggggactttctcatcgtctt	13	9	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	64940421	64940421	T	G	SNP	SPDYC	ENST00000377185	human	ensembl	69_37n	1	known	silent	c.783	p.G261	0.000	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710	113	1	0.88	93	18	16.07	-	-	-	G	64940421	T	G	64940421	2	3	232	1	0	0	0	0	0	0	0	1	15119	1683	59	5		5	SPDYC	11	64940421	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1272915	64940421	70066095	1741	17267										
POLA2	0	genome.wustl.edu	37	chr11	65061668	65061668	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgtcattgagagatgtgcAccatgagcctgtgtaccccc	10	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	65061668	65061668	A	C	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	missense	c.1289	p.H430P	1.000	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	302	3	0.98	184	45	19.57	-	-	-	C	65061668	A	C	65061668	3	2	232	1	0	0	0	0	1	0	0	0	12262	159	6	5	1343	5	POLA2	11	65061668	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	121247	65061668	69944848	1742	17268										
LTBP3	0	genome.wustl.edu	37	chr11	65310655	65310655	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccattggtattgatgcagtcAcccccaatgcaggctgcagg	11	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	65310655	65310655	A	C	SNP	LTBP3	ENST00000526927	human	ensembl	69_37n	-1	novel	nonstop	c.1468	p.*490G	0.997	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LTBP3	HGNC	ENSG00000168056	187	0	0	105	25	19.08	-	-	-	C	65310655	A	C	65310655	4	2	232	1	0	0	0	0	0	0	0	0	9141	146	6	5	1438	5	LTBP3	11	65310655	Nonstop_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	248987	65310655	69695861	1743	17269										
RAB1B	0	genome.wustl.edu	37	chr11	66039668	66039668	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacatcagcaccatcggggTggacttcaagatccgaacca	9	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	66039668	66039668	T	G	SNP	RAB1B	ENST00000311481	human	ensembl	69_37n	1	known	missense	c.128	p.V43G	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903	268	1	0.37	154	20	11.49	-	-	-	G	66039668	T	G	66039668	3	3	232	1	0	0	0	0	1	0	0	0	12989	1696	59	5	138	5	RAB1B	11	66039668	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	729013	66039668	68966848	1744	17270										
KDM2A	0	genome.wustl.edu	37	chr11	67012672	67012672	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttccagcttaaattccccActcggccaaaggtgcgggtt	9	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	67012672	67012672	A	C	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.1576	p.T526P	0.002	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	229	0	0	207	32	13.39	-	-	-	C	67012672	A	C	67012672	3	2	232	1	0	0	0	0	1	0	0	0	8178	159	6	5	1626	5	KDM2A	11	67012672	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	973004	67012672	67993844	1745	17271										
DHCR7	0	genome.wustl.edu	37	chr11	71152322	71152322	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccttgaccatggcgaaggTggagacggcatagccaagga	15	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	71152322	71152322	T	G	SNP	DHCR7	ENST00000355527	human	ensembl	69_37n	-1	known	missense	c.577	p.T193P	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893	50	0	0	32	5	13.51	-	-	-	G	71152322	T	G	71152322	3	3	232	1	0	0	0	0	1	0	0	0	4513	1696	59	5	866	5	DHCR7	11	71152322	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4139650	71152322	63854194	1746	17272										
DEFB108B	0	genome.wustl.edu	37	chr11	71548593	71548593	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagaattgagagcactacAcccaaaaaggactgaagcct	8	11	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	71548593	71548593	A	C	SNP	DEFB108B	ENST00000328698	human	ensembl	69_37n	1	known	silent	c.207	p.T69	0.001	NULL	NULL	-	no_errors	DEFB108B	HGNC	ENSG00000184276	215	1	0.46	137	29	17.47	-	-	-	C	71548593	A	C	71548593	2	2	232	1	0	0	0	0	0	0	0	1	4434	146	6	5		5	DEFB108B	11	71548593	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	396271	71548593	63457923	1747	17273										
IL18BP	0	genome.wustl.edu	37	chr11	71711525	71711525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacaaaggacccctgccccTcccagcccccagtgttccca	7	21	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	71711525	71711525	T	C	SNP	IL18BP	ENST00000260049	human	ensembl	69_37n	1	known	missense	c.157	p.S53P	0.006	NULL	pfscan_Ig-like	-	no_errors	IL18BP	HGNC	ENSG00000137496	127	1	0.78	140	20	12.5	-	-	-	C	71711525	T	C	71711525	3	2	232	1	0	0	0	0	1	0	0	0	7700	1551	54	5	163	5	IL18BP	11	71711525	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	162932	71711525	63294991	1748	17274										
INPPL1	0	genome.wustl.edu	37	chr11	71946992	71946992	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acggggaggcccccagccccAccccgagcagctccccggga	13	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	71946992	71946992	A	C	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	silent	c.2841	p.P947	0.977	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	25	0	0	14	9	39.13	-	-	-	C	71946992	A	C	71946992	2	2	232	1	0	0	0	0	0	0	0	1	7815	146	6	5		5	INPPL1	11	71946992	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	235467	71946992	63059524	1749	17275										
C2CD3	0	genome.wustl.edu	37	chr11	73748605	73748605	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagggtctaggctgctggcAcctggcccaagatggtccct	13	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	73748605	73748605	A	C	SNP	C2CD3	ENST00000442398	human	ensembl	69_37n	-1	known	missense	c.2021	p.V674G	0.002	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_start_codon	C2CD3	HGNC	ENSG00000168014	247	1	0.4	180	37	16.82	-	-	-	C	73748605	A	C	73748605	3	2	232	1	0	0	0	0	1	0	0	0	2174	146	6	5	100	5	C2CD3	11	73748605	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1801613	73748605	61257911	1750	17276										
P4HA3	0	genome.wustl.edu	37	chr11	73996936	73996936	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcaatgtagggctccaggTggatgacctccttccggatg	14	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	73996936	73996936	T	G	SNP	P4HA3	ENST00000331597	human	ensembl	69_37n	-1	known	missense	c.1028	p.H343P	1.000	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380	197	1	0.5	116	18	13.43	-	-	-	G	73996936	T	G	73996936	3	3	232	1	0	0	0	0	1	0	0	0	11431	1696	59	5	634	5	P4HA3	11	73996936	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	248331	73996936	61009580	1751	17277										
UVRAG	0	genome.wustl.edu	37	chr11	75591009	75591009	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcgtggtgaagatatggggTggaaaggagaacatctacca	14	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	75591009	75591009	T	G	SNP	UVRAG	ENST00000356136	human	ensembl	69_37n	1	known	silent	c.357	p.G119	0.998	smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	UVRAG	HGNC	ENSG00000198382	370	1	0.27	215	31	12.55	-	-	-	G	75591009	T	G	75591009	2	3	232	1	0	0	0	0	0	0	0	1	17205	1683	59	5		5	UVRAG	11	75591009	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1594073	75591009	59415507	1752	17278										
GAB2	0	genome.wustl.edu	37	chr11	77937662	77937662	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttggcttgggggggcggggTgggggagctatggctgagtc	23	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	77937662	77937662	T	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	silent	c.1056	p.P352	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	52	0	0	305	58	15.89	-	-	-	G	77937662	T	G	77937662	2	3	232	1	0	0	0	0	0	0	0	1	6198	1683	59	5		5	GAB2	11	77937662	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2346653	77937662	57068854	1753	17279										
ODZ4	0	genome.wustl.edu	37	chr11	78399221	78399221	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatcacttcggaaactgctcAcctggccagtagggaaggtc	11	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	78399221	78399221	A	C	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.5138	p.V1713G	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	254	2	0.78	138	32	18.82	-	-	-	C	78399221	A	C	78399221	3	2	232	1	0	0	0	0	1	0	0	0	10910	159	6	5	3195	5	ODZ4	11	78399221	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	461559	78399221	56607295	1754	17280										
ODZ4	0	genome.wustl.edu	37	chr11	78443546	78443546	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcccatggcagccacagggTgtgctcctgtgtgatgaaag	13	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	78443546	78443546	T	G	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.2953	p.T985P	1.000	superfamily_CarboxyPept-like_regulatory	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	66	0	0	58	11	15.94	-	-	-	G	78443546	T	G	78443546	3	3	232	1	0	0	0	0	1	0	0	0	10910	1696	59	5	5412	5	ODZ4	11	78443546	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	44325	78443546	56562970	1755	17281										
ANKRD42	0	genome.wustl.edu	37	chr11	82938826	82938826	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtggctgcctttaagggTgatttggggatgcttaagaa	14	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	82938826	82938826	T	G	SNP	ANKRD42	ENST00000393392	human	ensembl	69_37n	1	known	silent	c.741	p.G247	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD42	HGNC	ENSG00000137494	272	1	0.36	187	53	21.99	-	-	-	G	82938826	T	G	82938826	2	3	232	1	0	0	0	0	0	0	0	1	669	1683	59	5		5	ANKRD42	11	82938826	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4495280	82938826	52067690	1756	17282										
RAB38	0	genome.wustl.edu	37	chr11	87883071	87883071	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatcgaagacaataaatgcAcccatagcttctcggtaata	6	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	87883071	87883071	A	C	SNP	RAB38	ENST00000526372	human	ensembl	69_37n	-1	putative	missense	c.250	p.C84G	0.624	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RAB38	HGNC	ENSG00000123892	655	1	0.15	424	51	10.69	-	-	-	C	87883071	A	C	87883071	3	2	232	1	0	0	0	0	1	0	0	0	13011	146	6	5	388	5	RAB38	11	87883071	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4944245	87883071	47123445	1757	17283										
CTSC	0	genome.wustl.edu	37	chr11	88045668	88045668	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccaacacatcatgcacccAcccagtcattgtctcgttgc	6	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	88045668	88045668	A	C	SNP	CTSC	ENST00000227266	human	ensembl	69_37n	-1	known	missense	c.373	p.W125G	0.998	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861	339	1	0.29	243	41	14.44	-	-	-	C	88045668	A	C	88045668	3	2	232	1	0	0	0	0	1	0	0	0	4063	159	6	5	1038	5	CTSC	11	88045668	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	162597	88045668	46960848	1758	17284										
FAT3	0	genome.wustl.edu	37	chr11	92495071	92495071	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaacagtcaaccatttgggTggtggttcaggttctagatg	12	6	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	92495071	92495071	T	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.3719	p.V1240G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	783	0	0	518	68	11.58	-	-	-	G	92495071	T	G	92495071	3	3	232	1	0	0	0	0	1	0	0	0	5737	1696	59	5	3733	5	FAT3	11	92495071	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4449403	92495071	42511445	1759	17285										
CCDC67	0	genome.wustl.edu	37	chr11	93148214	93148214	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtacaatgcctcccttgccAccttcgacatttcaagccaa	5	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	93148214	93148214	A	C	SNP	CCDC67	ENST00000298050	human	ensembl	69_37n	1	known	silent	c.1572	p.P524	0.003	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	191	0	0	145	29	16.57	-	-	-	C	93148214	A	C	93148214	2	2	232	1	0	0	0	0	0	0	0	1	2866	146	6	5		5	CCDC67	11	93148214	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	653143	93148214	41858302	1760	17286										
MED17	0	genome.wustl.edu	37	chr11	93527179	93527179	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagttaacctcttcaaacgAcctttgcccaaatccaaacc	3	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	93527179	93527179	A	C	SNP	MED17	ENST00000251871	human	ensembl	69_37n	1	known	silent	c.837	p.R279	0.754	pfam_Mediator_Med17	pfam_Mediator_Med17	-	no_errors	MED17	HGNC	ENSG00000042429	106	0	0	96	15	13.39	-	-	-	C	93527179	A	C	93527179	2	2	232	1	0	0	0	0	0	0	0	1	9506	262	10	5		5	MED17	11	93527179	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	378965	93527179	41479337	1761	17287										
HEPHL1	0	genome.wustl.edu	37	chr11	93826726	93826726	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctctcagtacaagaaggTggtttacagggaatatacgg	13	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	93826726	93826726	T	G	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	missense	c.2354	p.V785G	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	286	0	0	231	28	10.77	-	-	-	G	93826726	T	G	93826726	3	3	232	1	0	0	0	0	1	0	0	0	7106	1696	59	5	2404	5	HEPHL1	11	93826726	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	299547	93826726	41179790	1762	17288										
GPR83	0	genome.wustl.edu	37	chr11	94113575	94113575	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgaaggggttatagcaggTgctgctcatggcaaaccagt	13	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94113575	94113575	T	G	SNP	GPR83	ENST00000243673	human	ensembl	69_37n	-1	known	missense	c.1012	p.T338P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	179	0	0	116	17	12.69	-	-	-	G	94113575	T	G	94113575	3	3	232	1	0	0	0	0	1	0	0	0	6763	1696	59	5	263	5	GPR83	11	94113575	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	286849	94113575	40892941	1763	17289										
ANKRD49	0	genome.wustl.edu	37	chr11	94230119	94230119	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgctgaaaaaaatcgggTaaaaaaaaaaattacagagg	10	4	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94230119	94230119	T	G	SNP	ANKRD49	ENST00000302755	human	ensembl	69_37n	1	known	splice_site	c.258+2	e1+2	1.000	-	-	-	no_errors	ANKRD49	HGNC	ENSG00000168876	264	0	0	159	23	11.68	-	-	-	G	94230119	T	G	94230119	5	3	232	1	0	0	0	0	0	0	1	0	674	1652	57	5	262	5	ANKRD49	11	94230119	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	116544	94230119	40776397	1764	17290										
PIWIL4	0	genome.wustl.edu	37	chr11	94322375	94322375	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcgggatggcaccgagatcAcctatgtggattactacaag	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94322375	94322375	A	C	SNP	PIWIL4	ENST00000299001	human	ensembl	69_37n	1	known	missense	c.1003	p.T335P	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627	190	0	0	141	25	15.06	-	-	-	C	94322375	A	C	94322375	3	2	232	1	0	0	0	0	1	0	0	0	12034	159	6	5	1033	5	PIWIL4	11	94322375	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	92256	94322375	40684141	1765	17291										
AMOTL1	0	genome.wustl.edu	37	chr11	94533454	94533454	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgtcctgcggtaccagccAccccctgagtatggggtaac	12	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94533454	94533454	A	C	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	silent	c.1098	p.P366	0.848	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	347	3	0.85	240	42	14.74	-	-	-	C	94533454	A	C	94533454	2	2	232	1	0	0	0	0	0	0	0	1	583	146	6	5		5	AMOTL1	11	94533454	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	211079	94533454	40473062	1766	17292										
CWC15	0	genome.wustl.edu	37	chr11	94705287	94705287	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgaaagttggctcaaatcAccttctccttttccccttcc	4	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94705287	94705287	A	C	SNP	CWC15	ENST00000279839	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.841	-	-	-	no_errors	CWC15	HGNC	ENSG00000150316	136	0	0	107	36	25.17	-	-	-	C	94705287	A	C	94705287	1	2	232	0	1	0	0	0	0	0	0	0	4098	146	6	5		5	CWC15	11	94705287	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	171833	94705287	40301229	1767	17293										
CWC15	0	genome.wustl.edu	37	chr11	94705308	94705308	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttctccttttccccttccAcctctggcaggttcaaaggt	6	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	94705308	94705308	A	C	SNP	CWC15	ENST00000279839	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	CWC15	HGNC	ENSG00000150316	128	0	0	96	34	25.95	-	-	-	C	94705308	A	C	94705308	1	2	232	0	1	0	0	0	0	0	0	0	4098	146	6	5		5	CWC15	11	94705308	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21	94705308	40301208	1768	17294										
ANGPTL5	0	genome.wustl.edu	37	chr11	101762073	101762073	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagatttaatcttgacaggTgagttgtttttggtccacgt	10	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	101762073	101762073	T	G	SNP	ANGPTL5	ENST00000334289	human	ensembl	69_37n	-1	known	silent	c.1104	p.S368	0.003	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL5	HGNC	ENSG00000187151	346	0	0	239	32	11.76	-	-	-	G	101762073	T	G	101762073	2	3	232	1	0	0	0	0	0	0	0	1	617	1683	59	5		5	ANGPTL5	11	101762073	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7056765	101762073	33244443	1769	17295										
MMP1	0	genome.wustl.edu	37	chr11	102667413	102667413	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctctgaaattgttggtccAcctttcatcttcatcaaaat	4	11	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	102667413	102667413	A	C	SNP	MMP1	ENST00000315274	human	ensembl	69_37n	-1	known	missense	c.607	p.W203G	0.998	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP1	HGNC	ENSG00000196611	160	0	0	66	13	16.46	-	-	-	C	102667413	A	C	102667413	3	2	232	1	0	0	0	0	1	0	0	0	9719	159	6	5	830	5	MMP1	11	102667413	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	905340	102667413	32339103	1770	17296										
MMP1	0	genome.wustl.edu	37	chr11	102668080	102668080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacatctgggctgcttcatcAccttcagggtttcagcatct	8	13	6	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	102668080	102668080	A	C	SNP	MMP1	ENST00000315274	human	ensembl	69_37n	-1	known	missense	c.257	p.V86G	0.997	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP1	HGNC	ENSG00000196611	180	1	0.55	88	18	16.98	-	-	-	C	102668080	A	C	102668080	3	2	232	1	0	0	0	0	1	0	0	0	9719	159	6	5	1188	5	MMP1	11	102668080	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	667	102668080	32338436	1771	17297										
CASP1	0	genome.wustl.edu	37	chr11	104905108	104905108	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatctcttccttgttcagcAcccttgtctgtaataattca	4	13	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	104905108	104905108	A	C	SNP	CASP1	ENST00000436863	human	ensembl	69_37n	-1	known	missense	c.101	p.V34G	0.972	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752	615	1	0.16	426	66	13.39	-	-	-	C	104905108	A	C	104905108	3	2	232	1	0	0	0	0	1	0	0	0	2693	159	6	5	1145	5	CASP1	11	104905108	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2237028	104905108	30101408	1772	17298										
GRIA4	0	genome.wustl.edu	37	chr11	105623816	105623816	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacatatctccctcatcacAccaagtttccctactgaggg	5	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	105623816	105623816	A	C	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	silent	c.357	p.T119	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	167	0	0	122	18	12.77	-	-	-	C	105623816	A	C	105623816	2	2	232	1	0	0	0	0	0	0	0	1	6821	146	6	5		5	GRIA4	11	105623816	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	718708	105623816	29382700	1773	17299										
ATM	0	genome.wustl.edu	37	chr11	108204634	108204634	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcataaatattccagcagAccagccaattactaaactta	5	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	108204634	108204634	A	C	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.7949	p.D2650A	1.000	superfamily_Kinase-like_dom,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	350	0	0	261	44	14.43	-	-	-	C	108204634	A	C	108204634	3	2	232	1	0	0	0	0	1	0	0	0	1113	275	10	5	8159	5	ATM	11	108204634	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2580818	108204634	26801882	1774	17300										
RDX	0	genome.wustl.edu	37	chr11	110128533	110128533	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagacccaaagcatcaacAcctagccacaattcagttcc	4	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	110128533	110128533	A	C	SNP	RDX	ENST00000530749	human	ensembl	69_37n	-1	known	silent	c.657	p.G219	0.104	pirsf_ERM,pfam_FERM_PH-like_C,prints_Ez/rad/moesin,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710	120	0	0	93	38	29.01	-	-	-	C	110128533	A	C	110128533	2	2	232	1	0	0	0	0	0	0	0	1	13281	146	6	5		5	RDX	11	110128533	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1923899	110128533	24877983	1775	17301										
C11orf92	0	genome.wustl.edu	37	chr11	111167049	111167049	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccaaggagctcccctctcAcccagcctggcctgccttct	7	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	111167049	111167049	A	C	SNP	C11orf92	ENST00000355430	human	ensembl	69_37n	-1	known	missense	c.155	p.V52G	0.000	NULL	NULL	-	no_errors	C11orf92	HGNC	ENSG00000196167	64	0	0	30	10	25	-	-	-	C	111167049	A	C	111167049	3	2	232	1	0	0	0	0	1	0	0	0	1683	159	6	5	223	5	C11orf92	11	111167049	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1038516	111167049	23839467	1776	17302										
SIK2	0	genome.wustl.edu	37	chr11	111591480	111591480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcatcagatacctccctcAcccagggtgagcacttcctc	8	16	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	111591480	111591480	A	C	SNP	SIK2	ENST00000304987	human	ensembl	69_37n	1	known	missense	c.1774	p.T592P	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145	114	0	0	73	19	20.43	-	-	-	C	111591480	A	C	111591480	3	2	232	1	0	0	0	0	1	0	0	0	14407	159	6	5	1816	5	SIK2	11	111591480	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	424431	111591480	23415036	1777	17303										
NCAM1	0	genome.wustl.edu	37	chr11	113078048	113078048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacctcggccagtccgtcAccctggtgtgcgatgccgaa	11	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	113078048	113078048	A	C	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.664	p.T222P	0.997	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	158	0	0	79	15	15.62	-	-	-	C	113078048	A	C	113078048	3	2	232	1	0	0	0	0	1	0	0	0	10274	159	6	5	717	5	NCAM1	11	113078048	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1486568	113078048	21928468	1778	17304										
TTC12	0	genome.wustl.edu	37	chr11	113230091	113230091	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttgtttcccaaggccaggTgtgaggaggatgtggacctg	15	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	113230091	113230091	T	G	SNP	TTC12	ENST00000314756	human	ensembl	69_37n	1	known	missense	c.1453	p.C485G	0.985	superfamily_ARM-type_fold	pfam_TPR-1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292	179	1	0.55	142	36	20.22	-	-	-	G	113230091	T	G	113230091	3	3	232	1	0	0	0	0	1	0	0	0	16776	1696	59	5	1515	5	TTC12	11	113230091	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	152043	113230091	21776425	1779	17305										
ANKK1	0	genome.wustl.edu	37	chr11	113264355	113264355	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagaaggtgctgtccacccAcagcctctgctggaagctca	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	113264355	113264355	A	C	SNP	ANKK1	ENST00000303941	human	ensembl	69_37n	1	known	missense	c.338	p.H113P	0.289	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ANKK1	HGNC	ENSG00000170209	57	0	0	48	6	10.91	-	-	-	C	113264355	A	C	113264355	3	2	232	1	0	0	0	0	1	0	0	0	631	159	6	5	344	5	ANKK1	11	113264355	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34264	113264355	21742161	1780	17306										
ZW10	0	genome.wustl.edu	37	chr11	113609076	113609076	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataatctttccagaagttcAcctttctgtgcccgcatttg	7	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	113609076	113609076	A	C	SNP	ZW10	ENST00000200135	human	ensembl	69_37n	-1	known	silent	c.1794	p.G598	0.998	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827	120	0	0	83	23	21.7	-	-	-	C	113609076	A	C	113609076	2	2	232	1	0	0	0	0	0	0	0	1	18338	146	6	5		5	ZW10	11	113609076	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	344721	113609076	21397440	1781	17307										
HTR3A	0	genome.wustl.edu	37	chr11	113853925	113853925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaactacaagccccttcaggTggtgactgcctgtagcctcg	11	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	113853925	113853925	T	G	SNP	HTR3A	ENST00000355556	human	ensembl	69_37n	1	known	missense	c.476	p.V159G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736	254	0	0	207	25	10.73	-	-	-	G	113853925	T	G	113853925	3	3	232	1	0	0	0	0	1	0	0	0	7498	1696	59	5	520	5	HTR3A	11	113853925	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	244849	113853925	21152591	1782	17308										
ZBTB16	0	genome.wustl.edu	37	chr11	114121049	114121049	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgtccctccgccctcaggTgagaagccctttgagtgtaa	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	114121049	114121049	T	G	SNP	ZBTB16	ENST00000335953	human	ensembl	69_37n	1	known	silent	c.1794	p.G598	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	168	0	0	108	18	14.17	-	-	-	G	114121049	T	G	114121049	2	3	232	1	0	0	0	0	0	0	0	1	17622	1710	59	5		5	ZBTB16	11	114121049	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	267124	114121049	20885467	1783	17309										
PAFAH1B2	0	genome.wustl.edu	37	chr11	117034545	117034545	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagcagaagaagtagcaggTgggatcgaggccattgtaca	14	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	117034545	117034545	T	G	SNP	PAFAH1B2	ENST00000527958	human	ensembl	69_37n	1	known	silent	c.348	p.G116	0.999	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PAFAH1B2	HGNC	ENSG00000168092	163	1	0.61	115	24	17.02	-	-	-	G	117034545	T	G	117034545	2	3	232	1	0	0	0	0	0	0	0	1	11458	1683	59	5		5	PAFAH1B2	11	117034545	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2913496	117034545	17971971	1784	17310										
DSCAML1	0	genome.wustl.edu	37	chr11	117301452	117301452	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcactcttgttggcccggTgagggatgggcacagccacg	14	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	117301452	117301452	T	G	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.5852	p.H1951P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	59	0	0	27	10	26.32	-	-	-	G	117301452	T	G	117301452	3	3	232	1	0	0	0	0	1	0	0	0	4804	1696	59	5	497	5	DSCAML1	11	117301452	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	266907	117301452	17705064	1785	17311										
DSCAML1	0	genome.wustl.edu	37	chr11	117335769	117335769	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcttgaggttgtccagggTgtagacctcgctgtcccccg	12	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	117335769	117335769	T	G	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.3334	p.T1112P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	109	0	0	81	17	17.35	-	-	-	G	117335769	T	G	117335769	3	3	232	1	0	0	0	0	1	0	0	0	4804	1696	59	5	3075	5	DSCAML1	11	117335769	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	34317	117335769	17670747	1786	17312										
AMICA1	0	genome.wustl.edu	37	chr11	118074218	118074218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctaggtggatactgcaggTgtagtttcctccatctgact	10	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118074218	118074218	T	G	SNP	AMICA1	ENST00000356289	human	ensembl	69_37n	-1	known	missense	c.697	p.T233P	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMICA1	HGNC	ENSG00000160593	583	0	0	463	56	10.79	-	-	-	G	118074218	T	G	118074218	3	3	232	1	0	0	0	0	1	0	0	0	574	1696	59	5	507	5	AMICA1	11	118074218	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	738449	118074218	16932298	1787	17313										
MPZL3	0	genome.wustl.edu	37	chr11	118110950	118110950	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgtgtggctgctgctgggAgggcgatatgtccagtctat	15	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118110950	118110950	A	G	SNP	MPZL3	ENST00000278949	human	ensembl	69_37n	-1	known	silent	c.216	p.P72	0.728	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL3	HGNC	ENSG00000160588	376	2	0.53	325	38	10.47	-	-	-	G	118110950	A	G	118110950	2	3	232	1	0	0	0	0	0	0	0	1	9823	291	11	5		5	MPZL3	11	118110950	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36732	118110950	16895566	1788	17314										
CD3E	0	genome.wustl.edu	37	chr11	118183471	118183471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cataggcagtgatgaggatcAcctgtcactgaaggaatttt	11	7	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118183471	118183471	A	C	SNP	CD3E	ENST00000361763	human	ensembl	69_37n	1	known	missense	c.242	p.H81P	0.000	smart_Ig_sub2	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3E	HGNC	ENSG00000198851	293	0	0	226	27	10.63	-	-	-	C	118183471	A	C	118183471	3	2	232	1	0	0	0	0	1	0	0	0	3040	159	6	5	260	5	CD3E	11	118183471	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	72521	118183471	16823045	1789	17315										
MLL	0	genome.wustl.edu	37	chr11	118343656	118343656	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacaatccccttagcatcAccatttttgcctgcttccac	3	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118343656	118343656	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.1782	p.S594	0.998	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	131	1	0.75	121	26	17.45	-	-	-	C	118343656	A	C	118343656	2	2	232	1	0	0	0	0	0	0	0	1	9691	146	6	5		5	MLL	11	118343656	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	160185	118343656	16662860	1790	17316										
MLL	0	genome.wustl.edu	37	chr11	118352528	118352528	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggactctagtcagaaacctAccccatcagcaagagaggat	9	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118352528	118352528	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.3733	p.T1245P	0.001	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	192	1	0.52	153	18	10.53	-	-	-	C	118352528	A	C	118352528	3	2	232	1	0	0	0	0	1	0	0	0	9691	391	14	5	3759	5	MLL	11	118352528	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8872	118352528	16653988	1791	17317										
MLL	0	genome.wustl.edu	37	chr11	118372517	118372517	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggtccccaggattcgaacAcccagttattctccaacaca	6	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118372517	118372517	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.6441	p.T2147	0.997	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	254	1	0.39	163	24	12.83	-	-	-	C	118372517	A	C	118372517	2	2	232	1	0	0	0	0	0	0	0	1	9691	146	6	5		5	MLL	11	118372517	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19989	118372517	16633999	1792	17318										
MLL	0	genome.wustl.edu	37	chr11	118376092	118376092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgctacccatgtctcatcAccagcacttacattccttcc	3	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118376092	118376092	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.9476	p.H3159P	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	258	0	0	191	28	12.79	-	-	-	C	118376092	A	C	118376092	3	2	232	1	0	0	0	0	1	0	0	0	9691	159	6	5	9582	5	MLL	11	118376092	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3575	118376092	16630424	1793	17319										
MLL	0	genome.wustl.edu	37	chr11	118376138	118376138	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctactcaaagtagtttcccAccaaacatcagcaatcctcc	4	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118376138	118376138	A	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.9522	p.P3174	0.986	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	257	0	0	198	27	11.95	-	-	-	C	118376138	A	C	118376138	2	2	232	1	0	0	0	0	0	0	0	1	9691	146	6	5		5	MLL	11	118376138	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	118376138	16630378	1794	17320										
ARCN1	0	genome.wustl.edu	37	chr11	118454721	118454721	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaccaaaagtggcacctgcAccagccaggtataatccagt	8	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118454721	118454721	A	C	SNP	ARCN1	ENST00000264028	human	ensembl	69_37n	1	known	silent	c.645	p.A215	0.981	NULL	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139	97	0	0	62	17	21.52	-	-	-	C	118454721	A	C	118454721	2	2	232	1	0	0	0	0	0	0	0	1	844	146	6	5		5	ARCN1	11	118454721	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	78583	118454721	16551795	1795	17321										
CXCR5	0	genome.wustl.edu	37	chr11	118765361	118765361	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagaatgccacctctctcAccacgttctaggtcccagtg	8	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118765361	118765361	A	C	SNP	CXCR5	ENST00000292174	human	ensembl	69_37n	1	known	missense	c.1108	p.T370P	0.996	prints_Chemokine_CXCR5	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR5,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_ATII_rcpt	-	no_errors	CXCR5	HGNC	ENSG00000160683	32	0	0	18	10	35.71	-	-	-	C	118765361	A	C	118765361	3	2	232	1	0	0	0	0	1	0	0	0	4125	159	6	5	1114	5	CXCR5	11	118765361	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	310640	118765361	16241155	1796	17322										
C2CD2L	0	genome.wustl.edu	37	chr11	118981767	118981767	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcttctctctgcagagaggTgaagaacaagtggagctctc	11	9	4	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118981767	118981767	T	G	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	silent	c.687	p.G229	0.996	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	302	1	0.33	160	22	12.02	-	-	-	G	118981767	T	G	118981767	2	3	232	1	0	0	0	0	0	0	0	1	2173	1683	59	5		5	C2CD2L	11	118981767	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	216406	118981767	16024749	1797	17323										
C2CD2L	0	genome.wustl.edu	37	chr11	118981975	118981975	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accttcttctgctcttaggtAcccagtgagaagccacccat	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118981975	118981975	A	C	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	silent	c.801	p.V267	0.997	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	321	0	0	154	23	12.92	-	-	-	C	118981975	A	C	118981975	2	2	232	1	0	0	0	0	0	0	0	1	2173	378	14	5		5	C2CD2L	11	118981975	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	208	118981975	16024541	1798	17324										
C2CD2L	0	genome.wustl.edu	37	chr11	118981990	118981990	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggtacccagtgagaagccAcccatgatgccccaggctca	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118981990	118981990	A	C	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	silent	c.816	p.P272	0.903	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	309	3	0.96	146	36	19.67	-	-	-	C	118981990	A	C	118981990	2	2	232	1	0	0	0	0	0	0	0	1	2173	146	6	5		5	C2CD2L	11	118981990	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15	118981990	16024526	1799	17325										
C2CD2L	0	genome.wustl.edu	37	chr11	118986930	118986930	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcttttccttcaaatccaaAcccaaggccaatggtaaccc	5	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	118986930	118986930	A	C	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	missense	c.2088	p.K696N	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	30	0	0	17	10	37.04	-	-	-	C	118986930	A	C	118986930	3	2	232	1	0	0	0	0	1	0	0	0	2173	40	2	5	2142	5	C2CD2L	11	118986930	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4940	118986930	16019586	1800	17326										
ABCG4	0	genome.wustl.edu	37	chr11	119029277	119029277	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctcccaaggtcctgacccAcctacggttcatgtcccacg	7	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	119029277	119029277	A	C	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.1178	p.H393P	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	163	1	0.61	129	23	15.13	-	-	-	C	119029277	A	C	119029277	3	2	232	1	0	0	0	0	1	0	0	0	70	159	6	5	1216	5	ABCG4	11	119029277	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42347	119029277	15977239	1801	17327										
ABCG4	0	genome.wustl.edu	37	chr11	119031329	119031329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcttcaagaccatccccActtacctgcaatggagctcc	6	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	119031329	119031329	A	C	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.1678	p.T560P	0.999	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	197	1	0.51	139	25	15.24	-	-	-	C	119031329	A	C	119031329	3	2	232	1	0	0	0	0	1	0	0	0	70	159	6	5	1728	5	ABCG4	11	119031329	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2052	119031329	15975187	1802	17328										
CBL	0	genome.wustl.edu	37	chr11	119158602	119158602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtaggtccagagtgtgaccAccccaaaatcaaaccttcct	7	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	119158602	119158602	A	C	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	missense	c.1982	p.H661P	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	111	1	0.89	143	17	10.62	-	-	-	C	119158602	A	C	119158602	3	2	232	1	0	0	0	0	1	0	0	0	2725	159	6	5	2028	5	CBL	11	119158602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	127273	119158602	15847914	1803	17329										
USP2	0	genome.wustl.edu	37	chr11	119228515	119228515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatggagaacttctttatacAccgttttctgcctcggcagc	9	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	119228515	119228515	A	C	SNP	USP2	ENST00000260187	human	ensembl	69_37n	-1	known	missense	c.1453	p.C485G	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP2	HGNC	ENSG00000036672	139	0	0	141	29	16.96	-	-	-	C	119228515	A	C	119228515	3	2	232	1	0	0	0	0	1	0	0	0	17148	159	6	5	380	5	USP2	11	119228515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69913	119228515	15778001	1804	17330										
TECTA	0	genome.wustl.edu	37	chr11	121016771	121016771	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgcagaactacgccagcAcctgccagactcaggggatt	12	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	121016771	121016771	A	C	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.4051	p.T1351P	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	92	0	0	73	24	24.74	-	-	-	C	121016771	A	C	121016771	3	2	232	1	0	0	0	0	1	0	0	0	15842	159	6	5	4093	5	TECTA	11	121016771	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1788256	121016771	13989745	1805	17331										
SORL1	0	genome.wustl.edu	37	chr11	121477606	121477606	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccccagggaagcagaaggTgtgattgtaggccactgggc	15	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	121477606	121477606	T	G	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.5001	p.G1667	0.705	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	216	2	0.92	124	27	17.76	-	-	-	G	121477606	T	G	121477606	2	3	232	1	0	0	0	0	0	0	0	1	15023	1683	59	5		5	SORL1	11	121477606	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	460835	121477606	13528910	1806	17332										
SORL1	0	genome.wustl.edu	37	chr11	121477640	121477640	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgggctcctcccatccacAcccatggcctcatccgtgag	8	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	121477640	121477640	A	C	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	missense	c.5035	p.T1679P	0.508	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	180	0	0	83	17	17	-	-	-	C	121477640	A	C	121477640	3	2	232	1	0	0	0	0	1	0	0	0	15023	159	6	5	5177	5	SORL1	11	121477640	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34	121477640	13528876	1807	17333										
UBASH3B	0	genome.wustl.edu	37	chr11	122653835	122653835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaagccagccacctacccAccctagagaaactggcccag	7	18	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	122653835	122653835	A	C	SNP	UBASH3B	ENST00000284273	human	ensembl	69_37n	1	known	missense	c.676	p.T226P	1.000	NULL	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127	149	0	0	80	23	21.9	-	-	-	C	122653835	A	C	122653835	3	2	232	1	0	0	0	0	1	0	0	0	16937	159	6	5	694	5	UBASH3B	11	122653835	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1176195	122653835	12352681	1808	17334										
SCN3B	0	genome.wustl.edu	37	chr11	123508970	123508970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgatgagcagccacaaggTgaggaagaccagaaggatgt	14	8	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123508970	123508970	T	G	SNP	SCN3B	ENST00000299333	human	ensembl	69_37n	-1	known	missense	c.508	p.T170P	1.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN3B	HGNC	ENSG00000166257	75	0	0	69	15	17.86	-	-	-	G	123508970	T	G	123508970	3	3	232	1	0	0	0	0	1	0	0	0	14007	1696	59	5	147	5	SCN3B	11	123508970	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	855135	123508970	11497546	1809	17335										
ZNF202	0	genome.wustl.edu	37	chr11	123601258	123601258	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcgtcactgcctcctcgccActttctggccgttggccccg	10	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123601258	123601258	A	C	SNP	ZNF202	ENST00000336139	human	ensembl	69_37n	-1	known	missense	c.339	p.S113R	0.946	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261	215	1	0.46	192	32	14.04	-	-	-	C	123601258	A	C	123601258	3	2	232	1	0	0	0	0	1	0	0	0	17859	156	6	5	1631	5	ZNF202	11	123601258	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	92288	123601258	11405258	1810	17336										
OR6X1	0	genome.wustl.edu	37	chr11	123624773	123624773	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtctgacaaaagacaatggTgaagcccaccacccaggagc	10	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123624773	123624773	T	G	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.454	p.T152P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	130	1	0.76	95	17	15.18	-	-	-	G	123624773	T	G	123624773	3	3	232	1	0	0	0	0	1	0	0	0	11285	1696	59	5	486	5	OR6X1	11	123624773	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	23515	123624773	11381743	1811	17337										
OR6X1	0	genome.wustl.edu	37	chr11	123624922	123624922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggtggtgcccacgaagaagTggaagaaggcctgcagcagg	17	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123624922	123624922	T	G	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.305	p.H102P	0.966	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	139	0	0	84	18	17.65	-	-	-	G	123624922	T	G	123624922	3	3	232	1	0	0	0	0	1	0	0	0	11285	1696	59	5	635	5	OR6X1	11	123624922	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	149	123624922	11381594	1812	17338										
OR6M1	0	genome.wustl.edu	37	chr11	123676376	123676376	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctttctgacggccctgggTggaggggatacgcaggatgg	18	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123676376	123676376	T	G	SNP	OR6M1	ENST00000309154	human	ensembl	69_37n	-1	known	missense	c.682	p.T228P	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099	207	0	0	93	15	13.89	-	-	-	G	123676376	T	G	123676376	3	3	232	1	0	0	0	0	1	0	0	0	11278	1696	59	5	262	5	OR6M1	11	123676376	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51454	123676376	11330140	1813	17339										
OR6M1	0	genome.wustl.edu	37	chr11	123676832	123676832	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggccaacaactttggggTaatgacagtggtgtataaga	13	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123676832	123676832	T	G	SNP	OR6M1	ENST00000309154	human	ensembl	69_37n	-1	known	missense	c.226	p.T76P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099	352	0	0	226	32	12.31	-	-	-	G	123676832	T	G	123676832	3	3	232	1	0	0	0	0	1	0	0	0	11278	1638	57	5	718	5	OR6M1	11	123676832	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	456	123676832	11329684	1814	17340										
OR4D5	0	genome.wustl.edu	37	chr11	123811038	123811038	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgcagcaaggccctgtctAcctgtgcctctcacattgct	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123811038	123811038	A	C	SNP	OR4D5	ENST00000307033	human	ensembl	69_37n	1	known	missense	c.715	p.T239P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D5	HGNC	ENSG00000171014	269	1	0.37	215	27	11.11	-	-	-	C	123811038	A	C	123811038	3	2	232	1	0	0	0	0	1	0	0	0	11130	391	14	5	717	5	OR4D5	11	123811038	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	134206	123811038	11195478	1815	17341										
OR10G4	0	genome.wustl.edu	37	chr11	123886699	123886699	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatgatgagtgggagcaggTgtgccctcctggccaccggc	16	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123886699	123886699	T	G	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	missense	c.418	p.C140G	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	370	0	0	253	35	12.11	-	-	-	G	123886699	T	G	123886699	3	3	232	1	0	0	0	0	1	0	0	0	10974	1696	59	5	420	5	OR10G4	11	123886699	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	75661	123886699	11119817	1816	17342										
OR10G9	0	genome.wustl.edu	37	chr11	123894290	123894290	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaaactggcctgtgcagacAcctcagccaacgagatggtc	11	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123894290	123894290	A	C	SNP	OR10G9	ENST00000375024	human	ensembl	69_37n	1	known	missense	c.571	p.T191P	0.195	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981	296	1	0.34	210	36	14.46	-	-	-	C	123894290	A	C	123894290	3	2	232	1	0	0	0	0	1	0	0	0	10977	159	6	5	573	5	OR10G9	11	123894290	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7591	123894290	11112226	1817	17343										
OR10G7	0	genome.wustl.edu	37	chr11	123909465	123909465	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgcttggggacaccaaggTcatcagcattttgggcaccg	13	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	123909465	123909465	T	G	SNP	OR10G7	ENST00000330487	human	ensembl	69_37n	-1	known	missense	c.244	p.T82P	0.123	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634	339	2	0.59	229	30	11.41	-	-	-	G	123909465	T	G	123909465	3	3	232	1	0	0	0	0	1	0	0	0	10975	1667	58	5	695	5	OR10G7	11	123909465	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	15175	123909465	11097051	1818	17344										
OR8B3	0	genome.wustl.edu	37	chr11	124266658	124266658	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacaacaatgagaacaaccAcctcgttgacataggtgctg	8	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124266658	124266658	A	C	SNP	OR8B3	ENST00000354597	human	ensembl	69_37n	-1	known	missense	c.590	p.V197G	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B3	HGNC	ENSG00000196661	246	0	0	142	25	14.79	-	-	-	C	124266658	A	C	124266658	3	2	232	1	0	0	0	0	1	0	0	0	11301	159	6	5	353	5	OR8B3	11	124266658	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	357193	124266658	10739858	1819	17345										
OR8A1	0	genome.wustl.edu	37	chr11	124440743	124440743	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcagcacctgcagctcccAccttgcagccgtgggaatgt	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124440743	124440743	A	C	SNP	OR8A1	ENST00000284287	human	ensembl	69_37n	1	known	missense	c.779	p.H260P	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8A1	HGNC	ENSG00000196119	189	1	0.53	142	42	22.58	-	-	-	C	124440743	A	C	124440743	3	2	232	1	0	0	0	0	1	0	0	0	11298	159	6	5	781	5	OR8A1	11	124440743	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	174085	124440743	10565773	1820	17346										
SIAE	0	genome.wustl.edu	37	chr11	124530604	124530604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacgtcatgaactctcagggTgaagtttattttctccaaag	9	8	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124530604	124530604	T	G	SNP	SIAE	ENST00000263593	human	ensembl	69_37n	-1	known	missense	c.325	p.T109P	0.002	NULL	pfam_DUF303_acetylest,superfamily_Esterase_SGNH_hydro-type	-	no_errors	SIAE	HGNC	ENSG00000110013	636	3	0.47	465	55	10.56	-	-	-	G	124530604	T	G	124530604	3	3	232	1	0	0	0	0	1	0	0	0	14387	1696	59	5	1278	5	SIAE	11	124530604	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	89861	124530604	10475912	1821	17347										
ROBO4	0	genome.wustl.edu	37	chr11	124756675	124756675	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacgctgatgtacccataggTggtggggggtgaaggagccc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124756675	124756675	T	G	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.2479	p.T827P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	71	0	0	35	13	27.08	-	-	-	G	124756675	T	G	124756675	3	3	232	1	0	0	0	0	1	0	0	0	13602	1696	59	5	556	5	ROBO4	11	124756675	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	226071	124756675	10249841	1822	17348	188	2								
ROBO4	0	genome.wustl.edu	37	chr11	124756685	124756685	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacccataggtggtggggggTgaaggagcccttggcatggg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124756685	124756685	T	G	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	silent	c.2469	p.S823	0.670	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	66	0	0	36	12	25	-	-	-	G	124756685	T	G	124756685	2	3	232	1	0	0	0	0	0	0	0	1	13602	1683	59	5		5	ROBO4	11	124756685	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10	124756685	10249831	1823	17349	188	2								
CCDC15	0	genome.wustl.edu	37	chr11	124857166	124857166	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatttgctggaaacccagggTgatttgacaggaatccagag	13	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	124857166	124857166	T	G	SNP	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	silent	c.1044	p.G348	0.001	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	375	1	0.26	249	40	13.7	-	-	-	G	124857166	T	G	124857166	2	3	232	1	0	0	0	0	0	0	0	1	2809	1683	59	5		5	CCDC15	11	124857166	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	100481	124857166	10149350	1824	17350										
FEZ1	0	genome.wustl.edu	37	chr11	125325954	125325954	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcacggatggcaccctccAcctggtccagcagctcggtc	11	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	125325954	125325954	A	C	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	missense	c.716	p.V239G	1.000	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	58	0	0	42	13	23.64	-	-	-	C	125325954	A	C	125325954	3	2	232	1	0	0	0	0	1	0	0	0	5869	159	6	5	482	5	FEZ1	11	125325954	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	468788	125325954	9680562	1825	17351										
CDON	0	genome.wustl.edu	37	chr11	125851170	125851170	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgagagagtggtgtagtccAccatctgcccgttcatatct	10	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	125851170	125851170	A	C	SNP	CDON	ENST00000392693	human	ensembl	69_37n	-1	known	missense	c.3050	p.V1017G	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CDON	HGNC	ENSG00000064309	140	0	0	113	18	13.74	-	-	-	C	125851170	A	C	125851170	3	2	232	1	0	0	0	0	1	0	0	0	3199	159	6	5	760	5	CDON	11	125851170	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	525216	125851170	9155346	1826	17352										
CDON	0	genome.wustl.edu	37	chr11	125867161	125867161	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagggatgtcttcagctgccAccagccaattgctggtcctc	11	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	125867161	125867161	A	C	SNP	CDON	ENST00000392693	human	ensembl	69_37n	-1	known	missense	c.2303	p.V768G	0.994	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CDON	HGNC	ENSG00000064309	165	0	0	110	24	17.91	-	-	-	C	125867161	A	C	125867161	3	2	232	1	0	0	0	0	1	0	0	0	3199	159	6	5	1527	5	CDON	11	125867161	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15991	125867161	9139355	1827	17353										
ETS1	0	genome.wustl.edu	37	chr11	128359261	128359261	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctcgagaaagcagtctttAcccagggcgcagagggctgc	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	128359261	128359261	A	C	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	silent	c.459	p.G153	0.853	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	429	0	0	291	36	10.98	-	-	-	C	128359261	A	C	128359261	2	2	232	1	0	0	0	0	0	0	0	1	5312	378	14	5		5	ETS1	11	128359261	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2492100	128359261	6647255	1828	17354										
ETS1	0	genome.wustl.edu	37	chr11	128359312	128359312	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaacttctggaagtctacAcctttcaggctgaattcatt	7	10	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	128359312	128359312	A	C	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	silent	c.408	p.G136	0.505	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	348	0	0	234	32	11.94	-	-	-	C	128359312	A	C	128359312	2	2	232	1	0	0	0	0	0	0	0	1	5312	146	6	5		5	ETS1	11	128359312	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	51	128359312	6647204	1829	17355										
ARHGAP32	0	genome.wustl.edu	37	chr11	128842500	128842500	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcagcaaaatcagcagtggTgggttgttcagccacatccc	11	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	128842500	128842500	T	G	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	missense	c.3859	p.T1287P	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	149	0	0	77	17	18.09	-	-	-	G	128842500	T	G	128842500	3	3	232	1	0	0	0	0	1	0	0	0	883	1696	59	5	2412	5	ARHGAP32	11	128842500	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	483188	128842500	6164016	1830	17356										
ARHGAP32	0	genome.wustl.edu	37	chr11	128842747	128842747	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccactgtagaaacggggTggagactggtcctgatccaa	12	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	128842747	128842747	T	G	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	silent	c.3612	p.P1204	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	173	1	0.57	82	24	21.82	-	-	-	G	128842747	T	G	128842747	2	3	232	1	0	0	0	0	0	0	0	1	883	1683	59	5		5	ARHGAP32	11	128842747	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	247	128842747	6163769	1831	17357										
ARHGAP32	0	genome.wustl.edu	37	chr11	128844695	128844695	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggctactccaatgtctggTgggctcaagtcaacatcctc	9	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	128844695	128844695	T	G	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	silent	c.2355	p.P785	0.971	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	163	0	0	103	19	15.45	-	-	-	G	128844695	T	G	128844695	2	3	232	1	0	0	0	0	0	0	0	1	883	1683	59	5		5	ARHGAP32	11	128844695	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1948	128844695	6161821	1832	17358										
ZBTB44	0	genome.wustl.edu	37	chr11	130130903	130130903	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacttaatctttctactttgAcccggacatcttcttcggta	5	12	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	130130903	130130903	A	C	SNP	ZBTB44	ENST00000357899	human	ensembl	69_37n	-1	known	missense	c.866	p.V289G	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB44	HGNC	ENSG00000196323	260	1	0.38	188	27	12.56	-	-	-	C	130130903	A	C	130130903	3	2	232	1	0	0	0	0	1	0	0	0	17641	275	10	5	515	5	ZBTB44	11	130130903	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1286208	130130903	4875613	1833	17359										
SNX19	0	genome.wustl.edu	37	chr11	130750654	130750654	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagaagcaggaggtactgcAcccagcgctgtggacttgtt	14	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	130750654	130750654	A	C	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.2621	p.V874G	1.000	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	279	1	0.35	168	38	18.45	-	-	-	C	130750654	A	C	130750654	3	2	232	1	0	0	0	0	1	0	0	0	14979	159	6	5	369	5	SNX19	11	130750654	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	619751	130750654	4255862	1834	17360										
SNX19	0	genome.wustl.edu	37	chr11	130750684	130750684	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggacttgttaaattagctAcctgcacctctagccacctg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	130750684	130750684	A	C	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.2591	p.V864G	0.994	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	287	0	0	164	29	14.87	-	-	-	C	130750684	A	C	130750684	3	2	232	1	0	0	0	0	1	0	0	0	14979	391	14	5	399	5	SNX19	11	130750684	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	30	130750684	4255832	1835	17361	189	2								
SNX19	0	genome.wustl.edu	37	chr11	130750690	130750690	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttaaattagctacctgcAcctctagccacctgtggtag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	130750690	130750690	A	C	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.2585	p.V862G	0.998	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	282	0	0	157	29	15.34	-	-	-	C	130750690	A	C	130750690	3	2	232	1	0	0	0	0	1	0	0	0	14979	159	6	5	405	5	SNX19	11	130750690	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6	130750690	4255826	1836	17362	189	2								
SNX19	0	genome.wustl.edu	37	chr11	130784186	130784186	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtatagagtgtgtatgggTggaatccagtgccactgtgc	14	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	130784186	130784186	T	G	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.1649	p.H550P	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	55	0	0	33	8	19.05	-	-	-	G	130784186	T	G	130784186	3	3	232	1	0	0	0	0	1	0	0	0	14979	1696	59	5	1373	5	SNX19	11	130784186	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	33496	130784186	4222330	1837	17363										
THYN1	0	genome.wustl.edu	37	chr11	134121159	134121159	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccactttagctaatgcctcAcctgagttctcagttttggt	7	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	11	134121159	134121159	A	C	SNP	THYN1	ENST00000341541	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	0.000	NULL	pfam_EVE_domain,superfamily_PUA-like_domain	-	no_errors	THYN1	HGNC	ENSG00000151500	385	0	0	207	25	10.78	-	-	-	C	134121159	A	C	134121159	2	2	232	1	0	0	0	0	0	0	0	1	15981	146	6	5		5	THYN1	11	134121159	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3336973	134121159	885357	1838	17364										
KDM5A	0	genome.wustl.edu	37	chr12	404772	404772	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagaatctgtcttcagagggTgggtgtgtggcctgcaaaat	14	6	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	404772	404772	T	G	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	silent	c.4422	p.P1474	0.998	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	492	0	0	398	61	13.26	-	-	-	G	404772	T	G	404772	2	3	232	1	0	0	0	0	0	0	0	1	8186	1683	59	5		5	KDM5A	12	404772	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		404772	133447123	1839	17365										
WNK1	0	genome.wustl.edu	37	chr12	977207	977207	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggaagcccaaactcaccActtccaacccctgctgagga	7	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	977207	977207	A	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.2570	p.H857P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	216	0	0	197	25	11.16	-	-	-	C	977207	A	C	977207	3	2	232	1	0	0	0	0	1	0	0	0	17474	159	6	5	2608	5	WNK1	12	977207	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	572435	977207	132874688	1840	17366										
WNK1	0	genome.wustl.edu	37	chr12	989988	989988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattctacagtcctatccccTcccatgccgacagaagtact	5	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	989988	989988	T	C	SNP	WNK1	ENST00000545285	human	ensembl	69_37n	1	novel	missense	c.433	p.S145P	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	WNK1	HGNC	ENSG00000060237	455	2	0.44	383	57	12.84	-	-	-	C	989988	T	C	989988	3	2	232	1	0	0	0	0	1	0	0	0	17474	1538	54	5	4482	5	WNK1	12	989988	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12781	989988	132861907	1841	17367										
WNK1	0	genome.wustl.edu	37	chr12	990015	990015	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgacagaagtactggctacAcctgggtactttcccacagt	9	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	990015	990015	A	C	SNP	WNK1	ENST00000545285	human	ensembl	69_37n	1	novel	missense	c.460	p.T154P	0.876	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	WNK1	HGNC	ENSG00000060237	382	1	0.26	313	42	11.8	-	-	-	C	990015	A	C	990015	3	2	232	1	0	0	0	0	1	0	0	0	17474	146	6	5	4509	5	WNK1	12	990015	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27	990015	132861880	1842	17368										
WNK1	0	genome.wustl.edu	37	chr12	994743	994743	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcaggacctacttctacAcctttattaccccaagtacc	5	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	994743	994743	A	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.6267	p.T2089	0.815	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	232	1	0.43	240	34	12.41	-	-	-	C	994743	A	C	994743	2	2	232	1	0	0	0	0	0	0	0	1	17474	146	6	5		5	WNK1	12	994743	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4728	994743	132857152	1843	17369										
RAD52	0	genome.wustl.edu	37	chr12	1038983	1038983	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggtctactccatcccctcAccttcagctggaccctcaca	5	19	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	1038983	1038983	A	C	SNP	RAD52	ENST00000358495	human	ensembl	69_37n	-1	known	splice_site	c.348+2	e4+2	1.000	-	-	-	no_errors	RAD52	HGNC	ENSG00000002016	495	5	0.99	392	70	15.09	-	-	-	C	1038983	A	C	1038983	5	2	232	1	0	0	0	0	0	0	1	0	13074	173	6	5	938	5	RAD52	12	1038983	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	44240	1038983	132812912	1844	17370										
ERC1	0	genome.wustl.edu	37	chr12	1137101	1137101	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcccgctctgttgggaaggTggagccgagcagccagagcc	16	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	1137101	1137101	T	G	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.32	p.V11G	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	155	0	0	167	30	15.23	-	-	-	G	1137101	T	G	1137101	3	3	232	1	0	0	0	0	1	0	0	0	5247	1696	59	5	34	5	ERC1	12	1137101	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	98118	1137101	132714794	1845	17371										
CACNA1C	0	genome.wustl.edu	37	chr12	2795350	2795350	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtcgaagggcctccttccAcctggaatgtctgaagcgac	12	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	2795350	2795350	A	C	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.5912	p.H1971P	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	102	1	0.97	119	17	12.5	-	-	-	C	2795350	A	C	2795350	3	2	232	1	0	0	0	0	1	0	0	0	2565	159	6	5	6586	5	CACNA1C	12	2795350	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1658249	2795350	131056545	1846	17372										
TEAD4	0	genome.wustl.edu	37	chr12	3147261	3147261	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctttcggcaagcaggtggTggagaaagttgaggtaggag	17	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	3147261	3147261	T	G	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	1	known	missense	c.1025	p.V342G	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	53	0	0	49	14	22.22	-	-	-	G	3147261	T	G	3147261	3	3	232	1	0	0	0	0	1	0	0	0	15836	1696	59	5	1059	5	TEAD4	12	3147261	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	351911	3147261	130704634	1847	17373										
FGF23	0	genome.wustl.edu	37	chr12	4481814	4481814	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggtatcttctgctcatcacAcctgtaatcaccacaaagcc	5	14	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	4481814	4481814	A	C	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.261	p.G87	0.864	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	133	0	0	121	17	12.32	-	-	-	C	4481814	A	C	4481814	2	2	232	1	0	0	0	0	0	0	0	1	5898	146	6	5		5	FGF23	12	4481814	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1334553	4481814	129370081	1848	17374										
KCNA1	0	genome.wustl.edu	37	chr12	5021756	5021756	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaacaattgccctgcccgtAcctgtcattgtgtccaattt	6	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	5021756	5021756	A	C	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	silent	c.1212	p.V404	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	290	1	0.34	228	29	11.2	-	-	-	C	5021756	A	C	5021756	2	2	232	1	0	0	0	0	0	0	0	1	8055	378	14	5		5	KCNA1	12	5021756	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	539942	5021756	128830139	1849	17375										
TAPBPL	0	genome.wustl.edu	37	chr12	6570214	6570214	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccaagctccagccacccAcccatcacagcctcctgctt	5	22	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6570214	6570214	A	C	SNP	TAPBPL	ENST00000544289	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	TAPBPL	HGNC	ENSG00000139192	24	0	0	12	8	40	-	-	-	C	6570214	A	C	6570214	1	2	232	0	1	0	0	0	0	0	0	0	15645	174	6	5		5	TAPBPL	12	6570214	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1548458	6570214	127281681	1850	17376										
VAMP1	0	genome.wustl.edu	37	chr12	6574032	6574032	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttcccacctcttcaccccAccagcaacttcagcgatact	3	20	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6574032	6574032	A	C	SNP	VAMP1	ENST00000535927	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.483	-	-	-	no_errors	VAMP1	HGNC	ENSG00000139190	186	1	0.53	204	39	15.98	-	-	-	C	6574032	A	C	6574032	1	2	232	0	1	0	0	0	0	0	0	0	17209	174	6	5		5	VAMP1	12	6574032	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3818	6574032	127277863	1851	17377										
NOP2	0	genome.wustl.edu	37	chr12	6666517	6666517	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgctttagcttcccagtcAcctttggctccctgatccct	7	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6666517	6666517	A	C	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.2081	p.V694G	0.000	pfam_P120R	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	189	1	0.52	67	17	20.24	-	-	-	C	6666517	A	C	6666517	3	2	232	1	0	0	0	0	1	0	0	0	10610	159	6	5	361	5	NOP2	12	6666517	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	92485	6666517	127185378	1852	17378										
CHD4	0	genome.wustl.edu	37	chr12	6692026	6692026	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacttacttcaatattcccAccaacacgggccaacagagg	7	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6692026	6692026	A	C	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.4308	p.G1436	0.981	pfam_DUF1086	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	236	0	0	231	31	11.83	-	-	-	C	6692026	A	C	6692026	2	2	232	1	0	0	0	0	0	0	0	1	3356	146	6	5		5	CHD4	12	6692026	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	25509	6692026	127159869	1853	17379										
CHD4	0	genome.wustl.edu	37	chr12	6697021	6697021	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatcattttcttctttgccAcctgcgtgatgcgctcctcc	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6697021	6697021	A	C	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.3560	p.V1187G	1.000	pfam_HDA_complex_subunit-2/3,pfscan_Helicase_C	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	228	1	0.44	177	40	18.35	-	-	-	C	6697021	A	C	6697021	3	2	232	1	0	0	0	0	1	0	0	0	3356	159	6	5	2246	5	CHD4	12	6697021	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4995	6697021	127154874	1854	17380										
CHD4	0	genome.wustl.edu	37	chr12	6700887	6700887	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagatgagtacacgatgcccAccctccttaaggttcttgag	9	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6700887	6700887	A	C	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.3195	p.G1065	0.650	pfam_HDA_complex_subunit-2/3,pfscan_Helicase_C	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	297	2	0.67	287	59	17	-	-	-	C	6700887	A	C	6700887	2	2	232	1	0	0	0	0	0	0	0	1	3356	146	6	5		5	CHD4	12	6700887	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3866	6700887	127151008	1855	17381										
ING4	0	genome.wustl.edu	37	chr12	6761496	6761496	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggtgacaaaggcaataggTgggttcgttgggatccacag	15	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	6761496	6761496	T	G	SNP	ING4	ENST00000396807	human	ensembl	69_37n	-1	known	missense	c.589	p.T197P	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING4	HGNC	ENSG00000111653	185	1	0.54	194	32	14.16	-	-	-	G	6761496	T	G	6761496	3	3	232	1	0	0	0	0	1	0	0	0	7792	1696	59	5	172	5	ING4	12	6761496	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	60609	6761496	127090399	1856	17382										
ENO2	0	genome.wustl.edu	37	chr12	7031220	7031220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgctgtgtgtggatacaggTgcaagctggcccaggagaat	16	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	7031220	7031220	T	G	SNP	ENO2	ENST00000229277	human	ensembl	69_37n	1	known	missense	c.1069	p.C357G	1.000	pfam_Enolase_C,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO2	HGNC	ENSG00000111674	72	0	0	39	8	17.02	-	-	-	G	7031220	T	G	7031220	3	3	232	1	0	0	0	0	1	0	0	0	5159	1710	59	5	1103	5	ENO2	12	7031220	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	269724	7031220	126820675	1857	17383										
CD163L1	0	genome.wustl.edu	37	chr12	7559417	7559417	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccatacagcggttagttccAcctacaagccttagttcaag	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	7559417	7559417	A	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	silent	c.798	p.G266	0.002	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	162	0	0	175	38	17.84	-	-	-	C	7559417	A	C	7559417	2	2	232	1	0	0	0	0	0	0	0	1	2997	146	6	5		5	CD163L1	12	7559417	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	528197	7559417	126292478	1858	17384										
CD163L1	0	genome.wustl.edu	37	chr12	7586250	7586250	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccactgtcccagagcagggAccgtctccattgaccagcct	9	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	7586250	7586250	A	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	silent	c.165	p.G55	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	277	2	0.72	178	36	16.74	-	-	-	C	7586250	A	C	7586250	2	2	232	1	0	0	0	0	0	0	0	1	2997	262	10	5		5	CD163L1	12	7586250	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26833	7586250	126265645	1859	17385										
CD163L1	0	genome.wustl.edu	37	chr12	7586263	7586263	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcagggaccgtctccattgAccagcctcaactccaaatct	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	7586263	7586263	A	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.152	p.V51G	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	253	1	0.39	184	43	18.94	-	-	-	C	7586263	A	C	7586263	3	2	232	1	0	0	0	0	1	0	0	0	2997	275	10	5	4277	5	CD163L1	12	7586263	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	7586263	126265632	1860	17386										
CD163	0	genome.wustl.edu	37	chr12	7647966	7647966	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcacagcggctgcctccAcctctaagtcttagctccag	8	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	7647966	7647966	A	C	SNP	CD163	ENST00000359156	human	ensembl	69_37n	-1	known	silent	c.1131	p.G377	0.999	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD163	HGNC	ENSG00000177575	155	1	0.64	227	41	15.3	-	-	-	C	7647966	A	C	7647966	2	2	232	1	0	0	0	0	0	0	0	1	2996	146	6	5		5	CD163	12	7647966	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	61703	7647966	126203929	1861	17387										
FOXJ2	0	genome.wustl.edu	37	chr12	8203186	8203186	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccaatgtacccaatccccAcccaggactcagcaggatac	6	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	8203186	8203186	A	C	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	missense	c.1606	p.T536P	0.865	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	241	1	0.41	248	40	13.89	-	-	-	C	8203186	A	C	8203186	3	2	232	1	0	0	0	0	1	0	0	0	6060	159	6	5	1640	5	FOXJ2	12	8203186	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	555220	8203186	125648709	1862	17388										
C3AR1	0	genome.wustl.edu	37	chr12	8212594	8212594	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggtccgccaaggtgaggTggaggaaccaaattgtgttc	16	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	8212594	8212594	T	G	SNP	C3AR1	ENST00000307637	human	ensembl	69_37n	-1	known	missense	c.188	p.H63P	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C3A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Frt_met_rcpt,prints_C5A_anaphtx_rcpt	-	no_errors	C3AR1	HGNC	ENSG00000171860	158	1	0.63	173	44	20.28	-	-	-	G	8212594	T	G	8212594	3	3	232	1	0	0	0	0	1	0	0	0	2225	1696	59	5	1264	5	C3AR1	12	8212594	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9408	8212594	125639301	1863	17389										
PRR4	0	genome.wustl.edu	37	chr12	10999887	10999887	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcttggttaccactatcAccagggggtctaggtaggag	12	9	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	10999887	10999887	A	C	SNP	PRR4	ENST00000228811	human	ensembl	69_37n	-1	known	silent	c.180	p.G60	0.003	NULL	NULL	-	no_errors	PRR4	HGNC	ENSG00000111215	210	0	0	212	26	10.88	-	-	-	C	10999887	A	C	10999887	2	2	232	1	0	0	0	0	0	0	0	1	12679	146	6	5		5	PRR4	12	10999887	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2787293	10999887	122852008	1864	17390										
TAS2R50	0	genome.wustl.edu	37	chr12	11139353	11139353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggagatcttttttctcttcAcccagtcaatgaaatttacc	5	10	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11139353	11139353	A	C	SNP	TAS2R50	ENST00000506868	human	ensembl	69_37n	-1	known	missense	c.107	p.V36G	0.050	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126	293	0	0	197	45	18.52	-	-	-	C	11139353	A	C	11139353	3	2	232	1	0	0	0	0	1	0	0	0	15676	159	6	5	796	5	TAS2R50	12	11139353	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	139466	11139353	122712542	1865	17391										
TAS2R46	0	genome.wustl.edu	37	chr12	11214070	11214070	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaaatcaggatgaatgggTgggttgaaggatagctgaat	14	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11214070	11214070	T	G	SNP	TAS2R46	ENST00000533467	human	ensembl	69_37n	-1	known	missense	c.824	p.H275P	0.033	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R46	HGNC	ENSG00000226761	411	0	0	353	59	14.32	-	-	-	G	11214070	T	G	11214070	3	3	232	1	0	0	0	0	1	0	0	0	15674	1696	59	5	109	5	TAS2R46	12	11214070	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	74717	11214070	122637825	1866	17392										
PRB3	0	genome.wustl.edu	37	chr12	11420309	11420309	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttaccttcttgtgggggTggtccttgtggctttcctgg	14	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11420309	11420309	T	G	SNP	PRB3	ENST00000279573	human	ensembl	69_37n	-1	known	missense	c.748	p.T250P	0.560	NULL	NULL	-	pseudogene	PRB3	HGNC	ENSG00000197870	735	7	0.94	609	70	10.31	-	-	-	G	11420309	T	G	11420309	3	3	232	1	0	0	0	0	1	0	0	0	12525	1683	59	5	186	5	PRB3	12	11420309	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	206239	11420309	122431586	1867	17393										
PRB4	0	genome.wustl.edu	37	chr12	11461449	11461449	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggctttcctggatgaggTgggggaccttgggactggtt	17	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11461449	11461449	T	G	SNP	PRB4	ENST00000279575	human	ensembl	69_37n	-1	known	silent	c.468	p.P156	0.001	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	862	5	0.58	799	93	10.36	-	-	-	G	11461449	T	G	11461449	2	3	232	1	0	0	0	0	0	0	0	1	12526	1683	59	5		5	PRB4	12	11461449	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	41140	11461449	122390446	1868	17394										
PRB4	0	genome.wustl.edu	37	chr12	11461638	11461638	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggctttcctggatgaggTgggggaccttgggactggtt	17	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11461638	11461638	T	G	SNP	PRB4	ENST00000279575	human	ensembl	69_37n	-1	known	silent	c.279	p.P93	0.000	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	1142	8	0.69	1047	126	10.67	-	-	-	G	11461638	T	G	11461638	2	3	232	1	0	0	0	0	0	0	0	1	12526	1683	59	5		5	PRB4	12	11461638	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	189	11461638	122390257	1869	17395										
PRB4	0	genome.wustl.edu	37	chr12	11461737	11461737	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtttcctccttgtgggggTggtccttgtggctttcctgg	15	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11461737	11461737	T	G	SNP	PRB4	ENST00000279575	human	ensembl	69_37n	-1	known	silent	c.180	p.P60	0.484	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	832	3	0.36	783	92	10.5	-	-	-	G	11461737	T	G	11461737	2	3	232	1	0	0	0	0	0	0	0	1	12526	1683	59	5		5	PRB4	12	11461737	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	99	11461737	122390158	1870	17396										
PRB2	0	genome.wustl.edu	37	chr12	11546154	11546154	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctgcctccttgtgggggTggtccttgtggctttcctgg	15	10	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11546154	11546154	T	G	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	silent	c.858	p.P286	0.001	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	426	4	0.93	333	66	16.5	-	-	-	G	11546154	T	G	11546154	2	3	232	1	0	0	0	0	0	0	0	1	12524	1683	59	5		5	PRB2	12	11546154	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	84417	11546154	122305741	1871	17397										
PRB2	0	genome.wustl.edu	37	chr12	11546340	11546340	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttgtctccttgtgggggTggtccttgtggctttcctgg	15	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11546340	11546340	T	G	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	silent	c.672	p.P224	0.008	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	611	6	0.97	407	78	15.98	-	-	-	G	11546340	T	G	11546340	2	3	232	1	0	0	0	0	0	0	0	1	12524	1683	59	5		5	PRB2	12	11546340	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	186	11546340	122305555	1872	17398										
PRB2	0	genome.wustl.edu	37	chr12	11546526	11546526	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttgtctccttgtgggggTggtccttgtggctttcctgg	15	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	11546526	11546526	T	G	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	silent	c.486	p.P162	0.012	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	1007	7	0.69	697	100	12.55	-	-	-	G	11546526	T	G	11546526	2	3	232	1	0	0	0	0	0	0	0	1	12524	1683	59	5		5	PRB2	12	11546526	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	186	11546526	122305369	1873	17399										
LRP6	0	genome.wustl.edu	37	chr12	12312835	12312835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaactaaggtagtacgttcActtccatccattgcagctct	8	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	12312835	12312835	A	C	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.2343	p.S781R	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	198	0	0	158	32	16.84	-	-	-	C	12312835	A	C	12312835	3	2	232	1	0	0	0	0	1	0	0	0	9028	156	6	5	2550	5	LRP6	12	12312835	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	766309	12312835	121539060	1874	17400										
C12orf36	0	genome.wustl.edu	37	chr12	13526228	13526228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaattaaagccgtctgtccActcttcagcctctgaatcct	5	14	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	13526228	13526228	A	C	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	missense	c.327	p.S109R	0.000	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	211	0	0	229	26	10.2	-	-	-	C	13526228	A	C	13526228	3	2	232	1	0	0	0	0	1	0	0	0	1695	156	6	5	93	5	C12orf36	12	13526228	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1213393	13526228	120325667	1875	17401										
ATF7IP	0	genome.wustl.edu	37	chr12	14613535	14613535	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaacgtcagttcttcctgcAcccaatacagctactgtagt	7	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	14613535	14613535	A	C	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	silent	c.2265	p.A755	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	140	0	0	140	22	13.5	-	-	-	C	14613535	A	C	14613535	2	2	232	1	0	0	0	0	0	0	0	1	1091	146	6	5		5	ATF7IP	12	14613535	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1087307	14613535	119238360	1876	17402										
ARHGDIB	0	genome.wustl.edu	37	chr12	15095426	15095426	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgagagaattcttccaggTggcaagggtggggaaagggg	18	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	15095426	15095426	T	G	SNP	ARHGDIB	ENST00000539131	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	ARHGDIB	HGNC	ENSG00000111348	149	0	0	113	31	21.09	-	-	-	G	15095426	T	G	15095426	1	3	232	0	1	0	0	0	0	0	0	0	893	1711	59	5		5	ARHGDIB	12	15095426	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	481891	15095426	118756469	1877	17403										
EPS8	0	genome.wustl.edu	37	chr12	15784425	15784425	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtctcgcacgatactgccAccactgtcactggagctgct	9	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	15784425	15784425	A	C	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	silent	c.1995	p.G665	0.196	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	221	1	0.45	259	35	11.86	-	-	-	C	15784425	A	C	15784425	2	2	232	1	0	0	0	0	0	0	0	1	5231	146	6	5		5	EPS8	12	15784425	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	688999	15784425	118067470	1878	17404										
LMO3	0	genome.wustl.edu	37	chr12	16753638	16753638	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attagctttagtgtacagggTggagcccacctctcccaagc	10	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	16753638	16753638	T	G	SNP	LMO3	ENST00000541295	human	ensembl	69_37n	-1	known	missense	c.211	p.T71P	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540	140	0	0	124	24	16	-	-	-	G	16753638	T	G	16753638	3	3	232	1	0	0	0	0	1	0	0	0	8909	1696	59	5	292	5	LMO3	12	16753638	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	969213	16753638	117098257	1879	17405										
AEBP2	0	genome.wustl.edu	37	chr12	19653050	19653050	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacggccacatgatttcttCgatgcacaaacactggatgc	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	19653050	19653050	C	T	SNP	AEBP2	ENST00000398864	human	ensembl	69_37n	1	known	silent	c.1194	p.F398	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	33	0	0	26	7	21.21	-	-	-	T	19653050	C	T	19653050	2	4	232	1	0	0	0	0	0	0	0	1	350	883	31	1		1	AEBP2	12	19653050	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	2899412	19653050	114198845	1880	17406										
SLCO1B1	0	genome.wustl.edu	37	chr12	21358919	21358919	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatggaataacttacatctcAccctgtctagcaggttgcaa	7	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	21358919	21358919	A	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	69_37n	1	known	silent	c.1449	p.S483	0.986	pfam_OA_transporter,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	278	2	0.71	215	63	22.66	-	-	-	C	21358919	A	C	21358919	2	2	232	1	0	0	0	0	0	0	0	1	14812	146	6	5		5	SLCO1B1	12	21358919	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1705869	21358919	112492976	1881	17407										
SLCO1A2	0	genome.wustl.edu	37	chr12	21445269	21445269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacagctgcaattttggaacAcctgccaaaaaataacatat	5	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	21445269	21445269	A	C	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	missense	c.1439	p.V480G	0.996	pfam_OA_transporter,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	157	0	0	97	22	18.49	-	-	-	C	21445269	A	C	21445269	3	2	232	1	0	0	0	0	1	0	0	0	14811	173	6	5	589	5	SLCO1A2	12	21445269	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	86350	21445269	112406626	1882	17408										
KCNJ8	0	genome.wustl.edu	37	chr12	21919227	21919227	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaccacctccccttcaggTgtagttgttttcttgaccac	8	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	21919227	21919227	T	G	SNP	KCNJ8	ENST00000240662	human	ensembl	69_37n	-1	known	silent	c.705	p.T235	0.100	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	254	1	0.39	177	25	12.2	-	-	-	G	21919227	T	G	21919227	2	3	232	1	0	0	0	0	0	0	0	1	8110	1683	59	5		5	KCNJ8	12	21919227	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	473958	21919227	111932668	1883	17409										
ABCC9	0	genome.wustl.edu	37	chr12	22035767	22035767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgctcatagctgtccaggTgatatcttccaggctgtttc	9	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	22035767	22035767	T	G	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.1952	p.H651P	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	297	1	0.34	213	25	10.5	-	-	-	G	22035767	T	G	22035767	3	3	232	1	0	0	0	0	1	0	0	0	59	1696	59	5	2939	5	ABCC9	12	22035767	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	116540	22035767	111816128	1884	17410										
KIAA0528	0	genome.wustl.edu	37	chr12	22670987	22670987	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgactgtaggacttggaaggTgaaaaggaataagtttggtt	14	3	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	22670987	22670987	T	G	SNP	KIAA0528	ENST00000542683	human	ensembl	69_37n	-1	known	missense	c.293	p.H98P	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0528	HGNC	ENSG00000111731	219	0	0	167	25	12.95	-	-	-	G	22670987	T	G	22670987	3	3	232	1	0	0	0	0	1	0	0	0	8234	1683	59	5	2189	5	KIAA0528	12	22670987	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	635220	22670987	111180908	1885	17411										
KIAA0528	0	genome.wustl.edu	37	chr12	22697065	22697065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcgcccggccacgattttcAccttcagcttccctggcatg	10	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	22697065	22697065	A	C	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.20	p.V7G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	49	0	0	27	12	30.77	-	-	-	C	22697065	A	C	22697065	3	2	232	1	0	0	0	0	1	0	0	0	8234	159	6	5	3078	5	KIAA0528	12	22697065	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26078	22697065	111154830	1886	17412										
SOX5	0	genome.wustl.edu	37	chr12	24048881	24048881	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtcactctcctcttcttccActttctgtctgcttgtcacc	4	17	7	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	24048881	24048881	A	C	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.116	p.V39G	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	288	1	0.34	186	22	10.38	-	-	-	C	24048881	A	C	24048881	3	2	232	1	0	0	0	0	1	0	0	0	15043	159	6	5	2241	5	SOX5	12	24048881	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1351816	24048881	109803014	1887	17413										
ITPR2	0	genome.wustl.edu	37	chr12	26749941	26749941	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccagcaactccaccagggTgatgtggtaggctaaggggc	15	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	26749941	26749941	T	G	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.4129	p.T1377P	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	297	2	0.66	229	51	18.15	-	-	-	G	26749941	T	G	26749941	3	3	232	1	0	0	0	0	1	0	0	0	7975	1696	59	5	4084	5	ITPR2	12	26749941	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2701060	26749941	107101954	1888	17414										
ITPR2	0	genome.wustl.edu	37	chr12	26774129	26774129	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catagttgctgctcttctccAcccatagctcagacttttct	5	14	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	26774129	26774129	A	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.3389	p.V1130G	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	456	1	0.22	405	51	11.18	-	-	-	C	26774129	A	C	26774129	3	2	232	1	0	0	0	0	1	0	0	0	7975	159	6	5	4844	5	ITPR2	12	26774129	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24188	26774129	107077766	1889	17415										
PPFIBP1	0	genome.wustl.edu	37	chr12	27830023	27830023	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacgaagtgccagtgcacccAccctaggtattgtacccctg	9	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	27830023	27830023	A	C	SNP	PPFIBP1	ENST00000228425	human	ensembl	69_37n	1	known	missense	c.1609	p.T537P	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	94	0	0	81	18	18.18	-	-	-	C	27830023	A	C	27830023	3	2	232	1	0	0	0	0	1	0	0	0	12386	159	6	5	1717	5	PPFIBP1	12	27830023	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1055894	27830023	106021872	1890	17416										
PTHLH	0	genome.wustl.edu	37	chr12	28116533	28116533	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagacccaaatcggacggggTggttctttgtgttgggagag	16	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	28116533	28116533	T	G	SNP	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	missense	c.272	p.H91P	1.000	pfam_PTH/PTH-rel	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	204	2	0.97	187	51	21.34	-	-	-	G	28116533	T	G	28116533	3	3	232	1	0	0	0	0	1	0	0	0	12842	1696	59	5	273	5	PTHLH	12	28116533	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	286510	28116533	105735362	1891	17417										
CAPRIN2	0	genome.wustl.edu	37	chr12	30863399	30863399	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacctgagaagaatcactccAccctgctgttttattagcaa	6	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	30863399	30863399	A	C	SNP	CAPRIN2	ENST00000251071	human	ensembl	69_37n	-1	known	missense	c.2821	p.W941G	1.000	NULL	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	231	0	0	181	52	22.22	-	-	-	C	30863399	A	C	30863399	3	2	232	1	0	0	0	0	1	0	0	0	2661	159	6	5	566	5	CAPRIN2	12	30863399	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2746866	30863399	102988496	1892	17418										
CAPRIN2	0	genome.wustl.edu	37	chr12	30872034	30872034	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtctgcatggcttgaaagggTgctgtgttaatggttactga	14	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	30872034	30872034	T	G	SNP	CAPRIN2	ENST00000251071	human	ensembl	69_37n	-1	known	silent	c.2274	p.A758	0.036	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	292	0	0	185	52	21.94	-	-	-	G	30872034	T	G	30872034	2	3	232	1	0	0	0	0	0	0	0	1	2661	1683	59	5		5	CAPRIN2	12	30872034	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8635	30872034	102979861	1893	17419										
BICD1	0	genome.wustl.edu	37	chr12	32491811	32491811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taagagttccccctgatcccAcctccacagaatcatttctt	4	15	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	32491811	32491811	A	C	SNP	BICD1	ENST00000281474	human	ensembl	69_37n	1	known	missense	c.2662	p.T888P	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC-like	-	no_errors	BICD1	HGNC	ENSG00000151746	268	1	0.37	256	47	15.51	-	-	-	C	32491811	A	C	32491811	3	2	232	1	0	0	0	0	1	0	0	0	1433	159	6	5	2692	5	BICD1	12	32491811	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1619777	32491811	101360084	1894	17420										
KIF21A	0	genome.wustl.edu	37	chr12	39726826	39726826	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacctgtgtcctgagcaggTgcatcagatgaactcagctt	11	10	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	39726826	39726826	T	G	SNP	KIF21A	ENST00000547108	human	ensembl	69_37n	-1	known	missense	c.344	p.H115P	0.000	NULL	superfamily_Prefoldin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF21A	HGNC	ENSG00000139116	146	0	0	105	18	14.63	-	-	-	G	39726826	T	G	39726826	3	3	232	1	0	0	0	0	1	0	0	0	8340	1683	59	5	2533	5	KIF21A	12	39726826	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7235015	39726826	94125069	1895	17421										
ABCD2	0	genome.wustl.edu	37	chr12	40001488	40001488	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtaaaggcttctgtccgttcActaaccataacttgcttttg	7	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	40001488	40001488	A	C	SNP	ABCD2	ENST00000308666	human	ensembl	69_37n	-1	known	missense	c.1149	p.S383R	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD2	HGNC	ENSG00000173208	111	1	0.89	69	18	20.69	-	-	-	C	40001488	A	C	40001488	3	2	232	1	0	0	0	0	1	0	0	0	61	156	6	5	1105	5	ABCD2	12	40001488	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	274662	40001488	93850407	1896	17422										
ANO6	0	genome.wustl.edu	37	chr12	45742084	45742084	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgctttcttcaatccagccAccagaagccgcattgtaagt	7	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	45742084	45742084	A	C	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.619	p.T207P	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	226	0	0	176	29	14.08	-	-	-	C	45742084	A	C	45742084	3	2	232	1	0	0	0	0	1	0	0	0	700	159	6	5	657	5	ANO6	12	45742084	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5740596	45742084	88109811	1897	17423										
SLC38A1	0	genome.wustl.edu	37	chr12	46596829	46596829	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaattggcaggactgacgggTggcaaacaaatgcaaatgca	12	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	46596829	46596829	T	G	SNP	SLC38A1	ENST00000398637	human	ensembl	69_37n	-1	known	missense	c.866	p.H289P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371	184	1	0.54	109	35	24.31	-	-	-	G	46596829	T	G	46596829	3	3	232	1	0	0	0	0	1	0	0	0	14690	1696	59	5	621	5	SLC38A1	12	46596829	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	854745	46596829	87255066	1898	17424										
SLC38A1	0	genome.wustl.edu	37	chr12	46599916	46599916	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccaaaggtaactatcaccAccagaacgcggccatccacg	8	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	46599916	46599916	A	C	SNP	SLC38A1	ENST00000398637	human	ensembl	69_37n	-1	known	missense	c.593	p.V198G	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371	142	0	0	89	17	16.04	-	-	-	C	46599916	A	C	46599916	3	2	232	1	0	0	0	0	1	0	0	0	14690	159	6	5	906	5	SLC38A1	12	46599916	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3087	46599916	87251979	1899	17425										
PFKM	0	genome.wustl.edu	37	chr12	48524190	48524190	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggttcgagttggtatcttcAccggtgcccgtgtcttcttt	11	10	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	48524190	48524190	A	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.130	p.T44P	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	270	0	0	154	23	12.99	-	-	-	C	48524190	A	C	48524190	3	2	232	1	0	0	0	0	1	0	0	0	11839	159	6	5	357	5	PFKM	12	48524190	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1924274	48524190	85327705	1900	17426										
PFKM	0	genome.wustl.edu	37	chr12	48525122	48525122	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatcaaggcctggtggatggTggagatcacatcaaggaagc	14	7	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	48525122	48525122	T	G	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	silent	c.183	p.G61	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	120	0	0	70	17	19.54	-	-	-	G	48525122	T	G	48525122	2	3	232	1	0	0	0	0	0	0	0	1	11839	1683	59	5		5	PFKM	12	48525122	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	932	48525122	85326773	1901	17427										
PRKAG1	0	genome.wustl.edu	37	chr12	49398325	49398325	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcagaatgcgcttgtgggTgaggatgtacaaagtattgc	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49398325	49398325	T	G	SNP	PRKAG1	ENST00000548065	human	ensembl	69_37n	-1	known	missense	c.502	p.T168P	1.000	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG1	HGNC	ENSG00000181929	268	0	0	300	41	11.99	-	-	-	G	49398325	T	G	49398325	3	3	232	1	0	0	0	0	1	0	0	0	12581	1696	59	5	513	5	PRKAG1	12	49398325	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	873203	49398325	84453570	1902	17428										
MLL2	0	genome.wustl.edu	37	chr12	49416407	49416407	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttctcccgccggttggccAcctcgttccgaatgatggtg	11	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49416407	49416407	A	C	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.16304	p.V5435G	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	166	1	0.6	171	35	16.83	-	-	-	C	49416407	A	C	49416407	3	2	232	1	0	0	0	0	1	0	0	0	9692	159	6	5	325	5	MLL2	12	49416407	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18082	49416407	84435488	1903	17429										
MLL2	0	genome.wustl.edu	37	chr12	49445582	49445582	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataggcgagtcctcaggtggTggggacaggcgtgatgcctc	17	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49445582	49445582	T	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.1884	p.P628	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	199	1	0.5	139	33	19.08	-	-	-	G	49445582	T	G	49445582	2	3	232	1	0	0	0	0	0	0	0	1	9692	1683	59	5		5	MLL2	12	49445582	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	29175	49445582	84406313	1904	17430										
TROAP	0	genome.wustl.edu	37	chr12	49722997	49722997	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacctaaaacccggttcacAcccatgccatcaacccccag	4	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49722997	49722997	A	C	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	silent	c.1074	p.T358	0.194	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	303	1	0.33	280	36	11.29	-	-	-	C	49722997	A	C	49722997	2	2	232	1	0	0	0	0	0	0	0	1	16671	146	6	5		5	TROAP	12	49722997	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	277415	49722997	84128898	1905	17431										
TROAP	0	genome.wustl.edu	37	chr12	49724097	49724097	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcataactctgggacttcccAccttcctggactgttaaaac	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49724097	49724097	A	C	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	missense	c.1469	p.H490P	0.014	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	213	2	0.92	155	24	13.41	-	-	-	C	49724097	A	C	49724097	3	2	232	1	0	0	0	0	1	0	0	0	16671	159	6	5	1617	5	TROAP	12	49724097	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1100	49724097	84127798	1906	17432										
TROAP	0	genome.wustl.edu	37	chr12	49724636	49724636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcagtgggctccagcaaccAccagcctgatcttctcttcc	8	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	49724636	49724636	A	C	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	missense	c.2008	p.T670P	0.986	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	218	0	0	183	27	12.74	-	-	-	C	49724636	A	C	49724636	3	2	232	1	0	0	0	0	1	0	0	0	16671	159	6	5	2156	5	TROAP	12	49724636	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	539	49724636	84127259	1907	17433										
PRPF40B	0	genome.wustl.edu	37	chr12	50025192	50025192	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcatttccagatgcccccTccagggatccccccaccctt	5	20	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	50025192	50025192	T	C	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	silent	c.27	p.P9	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	287	2	0.69	268	59	18.04	-	-	-	C	50025192	T	C	50025192	2	2	232	1	0	0	0	0	0	0	0	1	12653	1538	54	5		5	PRPF40B	12	50025192	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	300556	50025192	83826703	1908	17434										
PRPF40B	0	genome.wustl.edu	37	chr12	50025228	50025228	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctttcctccgatggggctAccccccatgagtcagagacc	9	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	50025228	50025228	A	C	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	silent	c.63	p.L21	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	208	2	0.94	187	32	14.55	-	-	-	C	50025228	A	C	50025228	2	2	232	1	0	0	0	0	0	0	0	1	12653	378	14	5		5	PRPF40B	12	50025228	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36	50025228	83826667	1909	17435										
FMNL3	0	genome.wustl.edu	37	chr12	50047536	50047536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgctcctccaactcctccAccttctccagggctacattc	4	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	50047536	50047536	A	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1193	p.V398G	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	190	1	0.52	95	26	21.49	-	-	-	C	50047536	A	C	50047536	3	2	232	1	0	0	0	0	1	0	0	0	5999	159	6	5	1950	5	FMNL3	12	50047536	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	22308	50047536	83804359	1910	17436										
FMNL3	0	genome.wustl.edu	37	chr12	50055831	50055831	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcagaaattcccgcacccAcctgcagataaaggaaacac	6	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	50055831	50055831	A	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.370	p.W124G	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	180	0	0	152	30	16.3	-	-	-	C	50055831	A	C	50055831	3	2	232	1	0	0	0	0	1	0	0	0	5999	173	6	5	2801	5	FMNL3	12	50055831	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8295	50055831	83796064	1911	17437										
FMNL3	0	genome.wustl.edu	37	chr12	50059977	50059977	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtgtggggaggattcttcAcctggaatcgttcctgtaag	13	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	50059977	50059977	A	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.224	p.V75G	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	260	0	0	176	32	15.38	-	-	-	C	50059977	A	C	50059977	3	2	232	1	0	0	0	0	1	0	0	0	5999	159	6	5	2955	5	FMNL3	12	50059977	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4146	50059977	83791918	1912	17438										
DAZAP2	0	genome.wustl.edu	37	chr12	51634212	51634212	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcatcttcctcaggctccAccctataccgatgctccacc	5	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	51634212	51634212	A	C	SNP	DAZAP2	ENST00000549555	human	ensembl	69_37n	1	known	silent	c.99	p.P33	1.000	NULL	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283	121	1	0.82	92	28	23.33	-	-	-	C	51634212	A	C	51634212	2	2	232	1	0	0	0	0	0	0	0	1	4277	146	6	5		5	DAZAP2	12	51634212	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1574235	51634212	82217683	1913	17439										
DAZAP2	0	genome.wustl.edu	37	chr12	51634819	51634819	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcggtcccatctatccAcctggctccacagtgctggt	9	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	51634819	51634819	A	C	SNP	DAZAP2	ENST00000549555	human	ensembl	69_37n	1	known	silent	c.297	p.P99	0.993	pfam_DAZ_assoc-2	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283	130	1	0.76	117	21	15.22	-	-	-	C	51634819	A	C	51634819	2	2	232	1	0	0	0	0	0	0	0	1	4277	146	6	5		5	DAZAP2	12	51634819	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	607	51634819	82217076	1914	17440										
SLC4A8	0	genome.wustl.edu	37	chr12	51865301	51865301	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgcacagccagctggaccAccttagcctctattagtaag	8	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	51865301	51865301	A	C	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	missense	c.1889	p.H630P	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	240	0	0	188	30	13.76	-	-	-	C	51865301	A	C	51865301	3	2	232	1	0	0	0	0	1	0	0	0	14748	159	6	5	1943	5	SLC4A8	12	51865301	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	230482	51865301	81986594	1915	17441										
KRT85	0	genome.wustl.edu	37	chr12	52756741	52756741	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtctccccatgcctgatcAccgtggccttcatctcctca	8	17	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	52756741	52756741	A	C	SNP	KRT85	ENST00000257901	human	ensembl	69_37n	-1	known	missense	c.974	p.V325G	0.996	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443	166	0	0	97	26	21.14	-	-	-	C	52756741	A	C	52756741	3	2	232	1	0	0	0	0	1	0	0	0	8552	159	6	5	565	5	KRT85	12	52756741	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	891440	52756741	81095154	1916	17442										
KRT6B	0	genome.wustl.edu	37	chr12	52841596	52841596	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagcagcttgcggtaggTggcgatctccacatccaggg	13	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	52841596	52841596	T	G	SNP	KRT6B	ENST00000252252	human	ensembl	69_37n	-1	known	missense	c.1390	p.T464P	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479	289	2	0.69	206	40	16.19	-	-	-	G	52841596	T	G	52841596	3	3	232	1	0	0	0	0	1	0	0	0	8534	1696	59	5	316	5	KRT6B	12	52841596	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	84855	52841596	81010299	1917	17443										
KRT72	0	genome.wustl.edu	37	chr12	52981449	52981449	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagcagcttgcggtaggTggcgatctccatatccaggg	13	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	52981449	52981449	T	G	SNP	KRT72	ENST00000293745	human	ensembl	69_37n	-1	known	missense	c.1276	p.T426P	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486	214	2	0.93	163	32	16.24	-	-	-	G	52981449	T	G	52981449	3	3	232	1	0	0	0	0	1	0	0	0	8538	1696	59	5	271	5	KRT72	12	52981449	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	139853	52981449	80870446	1918	17444										
KRT3	0	genome.wustl.edu	37	chr12	53186544	53186544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcatctatcaaggcatccActttggcctgaagctccacc	6	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53186544	53186544	A	C	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	missense	c.974	p.V325G	0.839	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	244	1	0.41	148	20	11.9	-	-	-	C	53186544	A	C	53186544	3	2	232	1	0	0	0	0	1	0	0	0	8519	159	6	5	936	5	KRT3	12	53186544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	205095	53186544	80665351	1919	17445										
KRT3	0	genome.wustl.edu	37	chr12	53186562	53186562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactttggcctgaagctccAccttgttcatataggcactg	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53186562	53186562	A	C	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	missense	c.956	p.V319G	1.000	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	233	0	0	142	24	14.29	-	-	-	C	53186562	A	C	53186562	3	2	232	1	0	0	0	0	1	0	0	0	8519	159	6	5	954	5	KRT3	12	53186562	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18	53186562	80665333	1920	17446										
KRT3	0	genome.wustl.edu	37	chr12	53189593	53189593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccgccctcccccaaagccTccagcccgggagccgccagc	9	23	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53189593	53189593	T	C	SNP	KRT3	ENST00000309505	human	ensembl	69_37n	-1	known	silent	c.234	p.G78	0.386	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	68	0	0	49	15	23.08	-	-	-	C	53189593	T	C	53189593	2	2	232	1	0	0	0	0	0	0	0	1	8519	1538	54	5		5	KRT3	12	53189593	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3031	53189593	80662302	1921	17447										
KRT4	0	genome.wustl.edu	37	chr12	53203216	53203216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcgtcattaagactgtccAccttggcctccaactccacc	5	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53203216	53203216	A	C	SNP	KRT4	ENST00000293774	human	ensembl	69_37n	-1	known	missense	c.1007	p.V336G	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477	90	0	0	84	21	20	-	-	-	C	53203216	A	C	53203216	3	2	232	1	0	0	0	0	1	0	0	0	8530	159	6	5	801	5	KRT4	12	53203216	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13623	53203216	80648679	1922	17448										
SOAT2	0	genome.wustl.edu	37	chr12	53499767	53499767	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgtgtcttcatcatcagcAccctggccatcgacttcatt	7	13	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53499767	53499767	A	C	SNP	SOAT2	ENST00000301466	human	ensembl	69_37n	1	known	missense	c.412	p.T138P	1.000	NULL	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780	52	0	0	25	15	37.5	-	-	-	C	53499767	A	C	53499767	3	2	232	1	0	0	0	0	1	0	0	0	15000	159	6	5	430	5	SOAT2	12	53499767	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	296551	53499767	80352128	1923	17449										
ESPL1	0	genome.wustl.edu	37	chr12	53685501	53685501	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagtggtgccggtgccctcAcccctcaggacattcaggcc	11	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53685501	53685501	A	C	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.5548	p.T1850P	0.732	pfam_Peptidase_C50	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	179	1	0.55	147	23	13.37	-	-	-	C	53685501	A	C	53685501	3	2	232	1	0	0	0	0	1	0	0	0	5290	159	6	5	5646	5	ESPL1	12	53685501	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	185734	53685501	80166394	1924	17450										
C12orf10	0	genome.wustl.edu	37	chr12	53699825	53699825	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttaatcctacctggaaccAccccgaccaagacactgagg	7	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53699825	53699825	A	C	SNP	C12orf10	ENST00000549488	human	ensembl	69_37n	1	putative	missense	c.134	p.H45P	1.000	pfam_Met-dep_prot_hydro	pfam_Met-dep_prot_hydro	-	no_errors	C12orf10	HGNC	ENSG00000139637	66	0	0	114	23	16.79	-	-	-	C	53699825	A	C	53699825	3	2	232	1	0	0	0	0	1	0	0	0	1686	159	6	5	637	5	C12orf10	12	53699825	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	14324	53699825	80152070	1925	17451										
SP7	0	genome.wustl.edu	37	chr12	53722973	53722973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcattagcatagcctgaggTgggtgctggaggactgcctg	15	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53722973	53722973	T	G	SNP	SP7	ENST00000303846	human	ensembl	69_37n	-1	known	missense	c.253	p.T85P	0.982	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374	135	1	0.73	88	20	18.52	-	-	-	G	53722973	T	G	53722973	3	3	232	1	0	0	0	0	1	0	0	0	15058	1696	59	5	1046	5	SP7	12	53722973	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	23148	53722973	80128922	1926	17452										
SP1	0	genome.wustl.edu	37	chr12	53804902	53804902	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccttcagcccttattaccAccaatatggtagccatggag	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53804902	53804902	A	C	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.2236	p.T746P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	145	1	0.68	147	23	13.37	-	-	-	C	53804902	A	C	53804902	3	2	232	1	0	0	0	0	1	0	0	0	15048	159	6	5	2258	5	SP1	12	53804902	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	81929	53804902	80046993	1927	17453										
AMHR2	0	genome.wustl.edu	37	chr12	53825113	53825113	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgtccacgtggctgcccAcctctctgcccagaagactg	10	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	53825113	53825113	A	C	SNP	AMHR2	ENST00000257863	human	ensembl	69_37n	1	known	silent	c.1578	p.P526	0.000	pirsf_Anti-muellerian_hrmn_rcpt_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	65	0	0	95	23	19.49	-	-	-	C	53825113	A	C	53825113	2	2	232	1	0	0	0	0	0	0	0	1	573	146	6	5		5	AMHR2	12	53825113	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20211	53825113	80026782	1928	17454										
ATP5G2	0	genome.wustl.edu	37	chr12	54062992	54062992	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccagccccagaaccagccAccccaactgtggcagcccca	7	21	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	54062992	54062992	A	C	SNP	ATP5G2	ENST00000394349	human	ensembl	69_37n	-1	known	missense	c.422	p.V141G	1.000	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_F0-cplx_csu	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_F0-cplx_csu	-	no_errors	ATP5G2	HGNC	ENSG00000135390	100	1	0.99	112	30	20.98	-	-	-	C	54062992	A	C	54062992	3	2	232	1	0	0	0	0	1	0	0	0	1158	159	6	5	182	5	ATP5G2	12	54062992	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	237879	54062992	79788903	1929	17455										
NFE2	0	genome.wustl.edu	37	chr12	54686447	54686447	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcggcagttctgggctgccAccttgtttttgccccgtcgt	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	54686447	54686447	A	C	SNP	NFE2	ENST00000312156	human	ensembl	69_37n	-1	known	missense	c.833	p.V278G	1.000	pfam_bZIP_1,pfam_bZIP_2,pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405	72	0	0	84	24	22.22	-	-	-	C	54686447	A	C	54686447	3	2	232	1	0	0	0	0	1	0	0	0	10438	159	6	5	292	5	NFE2	12	54686447	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	623455	54686447	79165448	1930	17456										
NEUROD4	0	genome.wustl.edu	37	chr12	55421170	55421170	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacatgtcctatgattcctAcccccatcatggtattggga	8	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	55421170	55421170	A	C	SNP	NEUROD4	ENST00000242994	human	ensembl	69_37n	1	known	missense	c.947	p.Y316S	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD4	HGNC	ENSG00000123307	872	0	0	638	84	11.6	-	-	-	C	55421170	A	C	55421170	3	2	232	1	0	0	0	0	1	0	0	0	10422	391	14	5	949	5	NEUROD4	12	55421170	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	734723	55421170	78430725	1931	17457										
OR6C75	0	genome.wustl.edu	37	chr12	55759033	55759033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgatcattatcaccctcAccctttcagatccccatctg	3	17	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	55759033	55759033	A	C	SNP	OR6C75	ENST00000343399	human	ensembl	69_37n	1	known	missense	c.139	p.T47P	0.907	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857	376	0	0	310	65	17.11	-	-	-	C	55759033	A	C	55759033	3	2	232	1	0	0	0	0	1	0	0	0	11272	159	6	5	141	5	OR6C75	12	55759033	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	337863	55759033	78092862	1932	17458										
OR6C2	0	genome.wustl.edu	37	chr12	55846619	55846619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtatttgcactcattatcAccctagtttgtgtgattctg	7	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	55846619	55846619	A	C	SNP	OR6C2	ENST00000322678	human	ensembl	69_37n	1	known	missense	c.622	p.T208P	0.191	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	254	0	0	229	36	13.48	-	-	-	C	55846619	A	C	55846619	3	2	232	1	0	0	0	0	1	0	0	0	11264	159	6	5	624	5	OR6C2	12	55846619	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87586	55846619	78005276	1933	17459										
ITGA7	0	genome.wustl.edu	37	chr12	56091782	56091782	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagatgaagactttcccatcAccatcaaagggggcacccac	8	13	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56091782	56091782	A	C	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	silent	c.1353	p.G451	0.425	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	252	0	0	196	40	16.74	-	-	-	C	56091782	A	C	56091782	2	2	232	1	0	0	0	0	0	0	0	1	7935	146	6	5		5	ITGA7	12	56091782	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	245163	56091782	77760113	1934	17460										
CDK2	0	genome.wustl.edu	37	chr12	56361581	56361581	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggggaaagaaatgactaggTgggggggaaaggaatatttg	19	1	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56361581	56361581	T	G	SNP	CDK2	ENST00000556146	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDK2	HGNC	ENSG00000123374	38	0	0	35	25	40.32	-	-	-	G	56361581	T	G	56361581	1	3	232	0	1	0	0	0	0	0	0	0	3165	1711	59	5		5	CDK2	12	56361581	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	269799	56361581	77490314	1935	17461										
IKZF4	0	genome.wustl.edu	37	chr12	56428522	56428522	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcccctccgccttccacccAccaattgcatctcagaactc	4	20	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56428522	56428522	A	C	SNP	IKZF4	ENST00000262032	human	ensembl	69_37n	1	known	missense	c.1165	p.T389P	0.973	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411	115	0	0	225	47	17.22	-	-	-	C	56428522	A	C	56428522	3	2	232	1	0	0	0	0	1	0	0	0	7671	159	6	5	1195	5	IKZF4	12	56428522	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	66941	56428522	77423373	1936	17462										
ESYT1	0	genome.wustl.edu	37	chr12	56531159	56531159	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagccagtttgggactgaggTgagtctatatctggaaagga	14	5	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56531159	56531159	T	G	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	splice_site	c.1968+2	e17+2	1.000	-	-	-	no_errors	ESYT1	HGNC	ENSG00000139641	99	1	1	159	23	12.43	-	-	-	G	56531159	T	G	56531159	5	3	232	1	0	0	0	0	0	0	1	0	5301	1710	59	5	2036	5	ESYT1	12	56531159	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	102637	56531159	77320736	1937	17463										
MYL6B	0	genome.wustl.edu	37	chr12	56548626	56548626	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacaaggaccagctggagggTgaggagaagctcatctaagg	15	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56548626	56548626	T	G	SNP	MYL6B	ENST00000207437	human	ensembl	69_37n	1	known	splice_site	c.202+2	e2+2	1.000	-	-	-	no_errors	MYL6B	HGNC	ENSG00000196465	205	1	0.48	201	38	15.9	-	-	-	G	56548626	T	G	56548626	5	3	232	1	0	0	0	0	0	0	1	0	10124	1710	59	5	210	5	MYL6B	12	56548626	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	17467	56548626	77303269	1938	17464										
MYL6	0	genome.wustl.edu	37	chr12	56553408	56553408	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctgtttgaccgaacaggTgatggcaagatcctgtacag	12	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56553408	56553408	T	G	SNP	MYL6	ENST00000552297	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.080	-	-	-	no_errors	MYL6	HGNC	ENSG00000092841	160	1	0.62	169	21	10.99	-	-	-	G	56553408	T	G	56553408	5	3	232	1	0	0	0	0	0	0	1	0	10123	1683	59	5	79	5	MYL6	12	56553408	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4782	56553408	77298487	1939	17465										
SMARCC2	0	genome.wustl.edu	37	chr12	56565153	56565153	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttactttggctgcttcttccActtttcgaacatgggcctcc	7	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56565153	56565153	A	C	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.2156	p.V719G	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	79	0	0	45	13	22.41	-	-	-	C	56565153	A	C	56565153	3	2	232	1	0	0	0	0	1	0	0	0	14865	159	6	5	1520	5	SMARCC2	12	56565153	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11745	56565153	77286742	1940	17466										
STAT2	0	genome.wustl.edu	37	chr12	56744935	56744935	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggatgaggggtcgatggggAgtttggggcatgcagggctg	22	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56744935	56744935	A	G	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	silent	c.981	p.T327	0.944	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	219	2	0.9	279	42	13.04	-	-	-	G	56744935	A	G	56744935	2	3	232	1	0	0	0	0	0	0	0	1	15356	291	11	5		5	STAT2	12	56744935	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	179782	56744935	77106960	1941	17467										
STAT2	0	genome.wustl.edu	37	chr12	56745052	56745052	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgttccttctttcccccAgggttcctgcctggcctcta	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	56745052	56745052	A	C	SNP	STAT2	ENST00000557156	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581	391	3	0.76	557	71	10.87	-	-	-	C	56745052	A	C	56745052	1	2	232	0	1	0	0	0	0	0	0	0	15356	203	7	5		5	STAT2	12	56745052	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	117	56745052	77106843	1942	17468										
ZBTB39	0	genome.wustl.edu	37	chr12	57398476	57398476	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctcaaagttggcaggggTgatgaagtccaccacatagg	12	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57398476	57398476	T	G	SNP	ZBTB39	ENST00000300101	human	ensembl	69_37n	-1	known	missense	c.226	p.T76P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860	243	2	0.81	117	24	16.9	-	-	-	G	57398476	T	G	57398476	3	3	232	1	0	0	0	0	1	0	0	0	17636	1696	59	5	1916	5	ZBTB39	12	57398476	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	653424	57398476	76453419	1943	17469										
MYO1A	0	genome.wustl.edu	37	chr12	57431419	57431419	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcccccaggaccttctcaacAccttccctatggaagcaaat	5	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57431419	57431419	A	C	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	silent	c.1968	p.G656	0.806	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	297	0	0	247	57	18.63	-	-	-	C	57431419	A	C	57431419	2	2	232	1	0	0	0	0	0	0	0	1	10140	146	6	5		5	MYO1A	12	57431419	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32943	57431419	76420476	1944	17470										
NAB2	0	genome.wustl.edu	37	chr12	57485520	57485520	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagcaggtgggactgggggTggtccagaccgactggagcc	19	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57485520	57485520	T	G	SNP	NAB2	ENST00000300131	human	ensembl	69_37n	1	known	silent	c.696	p.G232	1.000	pfam_NAB_co-repressor_dom	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886	40	0	0	20	14	41.18	-	-	-	G	57485520	T	G	57485520	2	3	232	1	0	0	0	0	0	0	0	1	10204	1683	59	5		5	NAB2	12	57485520	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	54101	57485520	76366375	1945	17471										
STAT6	0	genome.wustl.edu	37	chr12	57492848	57492848	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acataacccctgccatccttAcccatctgttcagctgttgt	5	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57492848	57492848	A	C	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	silent	c.1905	p.G635	0.817	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	214	0	0	149	27	15.34	-	-	-	C	57492848	A	C	57492848	2	2	232	1	0	0	0	0	0	0	0	1	15361	378	14	5		5	STAT6	12	57492848	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7328	57492848	76359047	1946	17472										
INHBE	0	genome.wustl.edu	37	chr12	57850426	57850426	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtgggcagtgccctccccAcctggctggcagcccaggca	13	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57850426	57850426	A	C	SNP	INHBE	ENST00000266646	human	ensembl	69_37n	1	known	missense	c.848	p.H283P	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269	82	0	0	51	18	26.09	-	-	-	C	57850426	A	C	57850426	3	2	232	1	0	0	0	0	1	0	0	0	7798	159	6	5	854	5	INHBE	12	57850426	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	357578	57850426	76001469	1947	17473										
GLI1	0	genome.wustl.edu	37	chr12	57857868	57857868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagagagaccaacagctgcAccgagggtgagggctcaggc	15	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57857868	57857868	A	C	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	missense	c.187	p.T63P	0.979	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	157	0	0	97	30	23.62	-	-	-	C	57857868	A	C	57857868	3	2	232	1	0	0	0	0	1	0	0	0	6489	159	6	5	193	5	GLI1	12	57857868	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7442	57857868	75994027	1948	17474										
GLI1	0	genome.wustl.edu	37	chr12	57864698	57864698	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacccctatatggacttcccAcctactgatactctgggata	6	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57864698	57864698	A	C	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	silent	c.2175	p.P725	0.748	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	48	0	0	40	13	24.07	-	-	-	C	57864698	A	C	57864698	2	2	232	1	0	0	0	0	0	0	0	1	6489	146	6	5		5	GLI1	12	57864698	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6830	57864698	75987197	1949	17475										
MARS	0	genome.wustl.edu	37	chr12	57892008	57892008	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacgtcaacaatgtcccccAccttgggaacatcattggtt	7	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57892008	57892008	A	C	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.839	p.H280P	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	72	0	0	85	13	13.13	-	-	-	C	57892008	A	C	57892008	3	2	232	1	0	0	0	0	1	0	0	0	9387	159	6	5	869	5	MARS	12	57892008	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27310	57892008	75959887	1950	17476										
DCTN2	0	genome.wustl.edu	37	chr12	57926410	57926410	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgcttggcaatctcgttcAcctttcccaggacactctga	7	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	57926410	57926410	A	C	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	missense	c.884	p.V295G	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	101	0	0	132	21	13.64	-	-	-	C	57926410	A	C	57926410	3	2	232	1	0	0	0	0	1	0	0	0	4338	159	6	5	352	5	DCTN2	12	57926410	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34402	57926410	75925485	1951	17477										
LRIG3	0	genome.wustl.edu	37	chr12	59283813	59283813	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagtttaaacatcttgggTgggatagctgagattcggtt	14	5	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	59283813	59283813	T	G	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	silent	c.624	p.P208	0.111	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	249	0	0	153	22	12.5	-	-	-	G	59283813	T	G	59283813	2	3	232	1	0	0	0	0	0	0	0	1	9012	1683	59	5		5	LRIG3	12	59283813	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1357403	59283813	74568082	1952	17478										
DPY19L2	0	genome.wustl.edu	37	chr12	64062079	64062079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccatctcctcctctaccTccggctcccgggcgagggag	10	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	64062079	64062079	T	C	SNP	DPY19L2	ENST00000324472	human	ensembl	69_37n	-1	known	missense	c.95	p.E32G	0.446	NULL	pfam_Dpy-19	-	no_errors	DPY19L2	HGNC	ENSG00000177990	47	0	0	23	9	28.12	-	-	-	C	64062079	T	C	64062079	3	2	232	1	0	0	0	0	1	0	0	0	4776	1551	54	5	2269	5	DPY19L2	12	64062079	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4778266	64062079	69789816	1953	17479										
GRIP1	0	genome.wustl.edu	37	chr12	66839143	66839143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgatataggaaatcagaggTggagaagagagagtttctgt	14	3	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	66839143	66839143	T	G	SNP	GRIP1	ENST00000538164	human	ensembl	69_37n	-1	novel	missense	c.944	p.H315P	0.982	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GRIP1	HGNC	ENSG00000155974	146	0	0	116	23	16.55	-	-	-	G	66839143	T	G	66839143	3	3	232	1	0	0	0	0	1	0	0	0	6838	1683	59	5	1942	5	GRIP1	12	66839143	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2777064	66839143	67012752	1954	17480										
PTPRR	0	genome.wustl.edu	37	chr12	71050575	71050575	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatggatgtagcaataaaacAccctgttctacctattcctg	6	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	71050575	71050575	A	C	SNP	PTPRR	ENST00000283228	human	ensembl	69_37n	-1	known	missense	c.1789	p.C597G	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	191	0	0	165	37	18.14	-	-	-	C	71050575	A	C	71050575	3	2	232	1	0	0	0	0	1	0	0	0	12893	159	6	5	192	5	PTPRR	12	71050575	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4211432	71050575	62801320	1955	17481										
TSPAN8	0	genome.wustl.edu	37	chr12	71533563	71533563	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagaatcatgatgatggcAcctacagcaatcaatatgtc	7	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	71533563	71533563	A	C	SNP	TSPAN8	ENST00000247829	human	ensembl	69_37n	-1	known	silent	c.189	p.G63	0.056	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN8	HGNC	ENSG00000127324	364	0	0	229	32	12.17	-	-	-	C	71533563	A	C	71533563	2	2	232	1	0	0	0	0	0	0	0	1	16749	146	6	5		5	TSPAN8	12	71533563	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	482988	71533563	62318332	1956	17482										
LGR5	0	genome.wustl.edu	37	chr12	71978451	71978451	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcccagttccgtgccatcAccagcttatccagtgactga	7	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	71978451	71978451	A	C	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	silent	c.2661	p.S887	0.073	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	244	0	0	217	42	16.15	-	-	-	C	71978451	A	C	71978451	2	2	232	1	0	0	0	0	0	0	0	1	8812	146	6	5		5	LGR5	12	71978451	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	444888	71978451	61873444	1957	17483										
TBC1D15	0	genome.wustl.edu	37	chr12	72316975	72316975	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagatgtctgcagattaacAcctgcatgatcactgttctt	7	10	4	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	72316975	72316975	A	C	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	silent	c.2067	p.T689	1.000	NULL	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	225	0	0	164	20	10.81	-	-	-	C	72316975	A	C	72316975	2	2	232	1	0	0	0	0	0	0	0	1	15696	146	6	5		5	TBC1D15	12	72316975	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	338524	72316975	61534920	1958	17484										
GLIPR1	0	genome.wustl.edu	37	chr12	75875708	75875708	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagccaccccacaagctgcAcccaaacttcacttcactgg	6	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	75875708	75875708	A	C	SNP	GLIPR1	ENST00000266659	human	ensembl	69_37n	1	known	missense	c.269	p.H90P	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278	328	0	0	248	33	11.74	-	-	-	C	75875708	A	C	75875708	3	2	232	1	0	0	0	0	1	0	0	0	6493	159	6	5	275	5	GLIPR1	12	75875708	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3558733	75875708	57976187	1959	17485										
NAV3	0	genome.wustl.edu	37	chr12	78401189	78401189	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaacagcagcaacatagccAcccgaataccgcgacagtgg	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	78401189	78401189	A	C	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.1871	p.H624P	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	231	0	0	168	37	17.96	-	-	-	C	78401189	A	C	78401189	3	2	232	1	0	0	0	0	1	0	0	0	10257	159	6	5	1901	5	NAV3	12	78401189	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2525481	78401189	55450706	1960	17486										
MYF5	0	genome.wustl.edu	37	chr12	81111320	81111320	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcggagcccaccagccccAcctccaactgctctgatggc	9	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	81111320	81111320	A	C	SNP	MYF5	ENST00000228644	human	ensembl	69_37n	1	known	missense	c.478	p.T160P	1.000	pfam_Myf5,superfamily_HLH_DNA-bd	pfam_Basic,pfam_Myf5,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF5	HGNC	ENSG00000111049	154	1	0.65	165	28	14.43	-	-	-	C	81111320	A	C	81111320	3	2	232	1	0	0	0	0	1	0	0	0	10099	159	6	5	480	5	MYF5	12	81111320	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2710131	81111320	52740575	1961	17487										
PPFIA2	0	genome.wustl.edu	37	chr12	81762580	81762580	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcagtcagaagtctatcaAccgtatccgataatctcttg	6	10	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	81762580	81762580	A	C	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.1406	p.V469G	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	234	2	0.85	163	40	19.7	-	-	-	C	81762580	A	C	81762580	3	2	232	1	0	0	0	0	1	0	0	0	12383	43	2	5	2447	5	PPFIA2	12	81762580	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	651260	81762580	52089315	1962	17488										
LRRIQ1	0	genome.wustl.edu	37	chr12	85450905	85450905	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatgcccagccaacatgacAcccgctttggataaactgga	8	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	85450905	85450905	A	C	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	silent	c.2334	p.T778	0.993	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	484	0	0	409	70	14.58	-	-	-	C	85450905	A	C	85450905	2	2	232	1	0	0	0	0	0	0	0	1	9095	146	6	5		5	LRRIQ1	12	85450905	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3688325	85450905	48400990	1963	17489										
CEP290	0	genome.wustl.edu	37	chr12	88465679	88465679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccactttttaccttcttcccAcctaattaattcttctttag	1	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	88465679	88465679	A	C	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.5740	p.W1914G	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	43	0	0	35	8	18.6	-	-	-	C	88465679	A	C	88465679	3	2	232	1	0	0	0	0	1	0	0	0	3282	159	6	5	1757	5	CEP290	12	88465679	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3014774	88465679	45386216	1964	17490										
POC1B	0	genome.wustl.edu	37	chr12	89819118	89819118	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatatccacaggcctcttcAcccttgtctggcagagtcct	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	89819118	89819118	A	C	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	silent	c.1152	p.G384	0.999	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1B	HGNC	ENSG00000139323	221	1	0.45	151	54	26.34	-	-	-	C	89819118	A	C	89819118	2	2	232	1	0	0	0	0	0	0	0	1	12250	146	6	5		5	POC1B	12	89819118	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1353439	89819118	44032777	1965	17491										
GALNT4	0	genome.wustl.edu	37	chr12	89917263	89917263	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcccacgtgggaacacgggTggatctccaatttgccacca	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	89917263	89917263	T	G	SNP	GALNT4	ENST00000529983	human	ensembl	69_37n	-1	known	missense	c.1064	p.H355P	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT4	HGNC	ENSG00000257594	151	1	0.66	95	22	18.49	-	-	-	G	89917263	T	G	89917263	3	3	232	1	0	0	0	0	1	0	0	0	6265	1696	59	5	676	5	GALNT4	12	89917263	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	98145	89917263	43934632	1966	17492										
ATP2B1	0	genome.wustl.edu	37	chr12	89984840	89984840	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttcatttctattgtaaggTgaattccactgtcaacagca	7	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	89984840	89984840	T	G	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.3584	p.H1195P	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	229	0	0	177	27	13.24	-	-	-	G	89984840	T	G	89984840	3	3	232	1	0	0	0	0	1	0	0	0	1143	1696	59	5	82	5	ATP2B1	12	89984840	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	67577	89984840	43867055	1967	17493										
ATP2B1	0	genome.wustl.edu	37	chr12	89992457	89992457	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgatgctggctggcgatggAgggttgccgccttagagccc	16	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	89992457	89992457	A	G	SNP	ATP2B1	ENST00000359142	human	ensembl	69_37n	-1	known	missense	c.3415	p.S1139P	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATP_Ca_trans_C,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	303	2	0.65	246	50	16.78	-	-	-	G	89992457	A	G	89992457	3	3	232	1	0	0	0	0	1	0	0	0	1143	304	11	5	409	5	ATP2B1	12	89992457	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7617	89992457	43859438	1968	17494										
ATP2B1	0	genome.wustl.edu	37	chr12	90005090	90005090	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagcagtattaatattatcAccagtgaccatccgcacagt	7	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	90005090	90005090	A	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	silent	c.2127	p.G709	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	606	3	0.49	437	53	10.82	-	-	-	C	90005090	A	C	90005090	2	2	232	1	0	0	0	0	0	0	0	1	1143	146	6	5		5	ATP2B1	12	90005090	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12633	90005090	43846805	1969	17495										
ATP2B1	0	genome.wustl.edu	37	chr12	90028994	90028994	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccaaccagtttcaccttcAccttcttcctccccaacaga	2	18	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	90028994	90028994	A	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	silent	c.441	p.G147	0.928	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	172	0	0	157	23	12.64	-	-	-	C	90028994	A	C	90028994	2	2	232	1	0	0	0	0	0	0	0	1	1143	146	6	5		5	ATP2B1	12	90028994	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	23904	90028994	43822901	1970	17496										
EEA1	0	genome.wustl.edu	37	chr12	93172946	93172946	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcctcttcttcctttttcAcctggtcttttagtatctgc	5	13	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	93172946	93172946	A	C	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.3599	p.V1200G	0.867	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	300	0	0	181	28	13.4	-	-	-	C	93172946	A	C	93172946	3	2	232	1	0	0	0	0	1	0	0	0	4956	159	6	5	656	5	EEA1	12	93172946	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3143952	93172946	40678949	1971	17497										
EEA1	0	genome.wustl.edu	37	chr12	93213144	93213144	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaacagcagtctctccttcAccagcctgaatttttgcata	6	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	93213144	93213144	A	C	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.1668	p.G556	0.970	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	261	0	0	174	22	11.22	-	-	-	C	93213144	A	C	93213144	2	2	232	1	0	0	0	0	0	0	0	1	4956	146	6	5		5	EEA1	12	93213144	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	40198	93213144	40638751	1972	17498										
TMPO	0	genome.wustl.edu	37	chr12	98927870	98927870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcagatcctagtcgtacccAccaagcgcttgggattctga	9	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	98927870	98927870	A	C	SNP	TMPO	ENST00000266732	human	ensembl	69_37n	1	known	missense	c.1835	p.H612P	0.000	pfam_LAP2alpha	pfam_LAP2alpha,pfam_Thymopoietin_LEM,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM,pfscan_Thymopoietin_LEM	-	no_errors	TMPO	HGNC	ENSG00000120802	80	0	0	76	12	13.64	-	-	-	C	98927870	A	C	98927870	3	2	232	1	0	0	0	0	1	0	0	0	16332	159	6	5	1849	5	TMPO	12	98927870	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5714726	98927870	34924025	1973	17499										
ANKS1B	0	genome.wustl.edu	37	chr12	99548104	99548104	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaatccattagccatcaggTggttctcgtactgaggtagc	10	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	99548104	99548104	T	G	SNP	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	missense	c.2489	p.H830P	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	159	0	0	150	27	15.25	-	-	-	G	99548104	T	G	99548104	3	3	232	1	0	0	0	0	1	0	0	0	688	1696	59	5	1496	5	ANKS1B	12	99548104	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	620234	99548104	34303791	1974	17500										
SLC5A8	0	genome.wustl.edu	37	chr12	101587555	101587555	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagataactgctttaagaccAccctttgaggggaaagtata	9	8	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	101587555	101587555	A	C	SNP	SLC5A8	ENST00000536262	human	ensembl	69_37n	-1	known	silent	c.540	p.G180	0.952	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870	162	1	0.61	148	27	15.43	-	-	-	C	101587555	A	C	101587555	2	2	232	1	0	0	0	0	0	0	0	1	14760	146	6	5		5	SLC5A8	12	101587555	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2039451	101587555	32264340	1975	17501										
STAB2	0	genome.wustl.edu	37	chr12	104054533	104054533	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctcatacagttcaacaccAccgacaatgtaagtgaaaac	6	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	104054533	104054533	A	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.1861	p.T621P	0.031	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	140	0	0	104	25	19.38	-	-	-	C	104054533	A	C	104054533	3	2	232	1	0	0	0	0	1	0	0	0	15329	159	6	5	1927	5	STAB2	12	104054533	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2466978	104054533	29797362	1976	17502										
STAB2	0	genome.wustl.edu	37	chr12	104121095	104121095	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccccttcactgtttttgcAcctttatctgcagcctttga	7	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	104121095	104121095	A	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	silent	c.4902	p.A1634	0.450	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	360	2	0.55	311	49	13.46	-	-	-	C	104121095	A	C	104121095	2	2	232	1	0	0	0	0	0	0	0	1	15329	146	6	5		5	STAB2	12	104121095	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	66562	104121095	29730800	1977	17503										
NT5DC3	0	genome.wustl.edu	37	chr12	104179221	104179221	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaactctgggatgattgcAccagtcctccagccatgctt	8	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	104179221	104179221	A	C	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	silent	c.1221	p.G407	0.044	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696	119	1	0.83	112	29	20.57	-	-	-	C	104179221	A	C	104179221	2	2	232	1	0	0	0	0	0	0	0	1	10765	146	6	5		5	NT5DC3	12	104179221	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	58126	104179221	29672674	1978	17504										
RFX4	0	genome.wustl.edu	37	chr12	107080791	107080791	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaacagacagtggcatattcAccccggtccaaactcggaac	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	107080791	107080791	A	C	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	silent	c.534	p.S178	0.998	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	478	1	0.21	400	50	11.06	-	-	-	C	107080791	A	C	107080791	2	2	232	1	0	0	0	0	0	0	0	1	13348	146	6	5		5	RFX4	12	107080791	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2901570	107080791	26771104	1979	17505										
CORO1C	0	genome.wustl.edu	37	chr12	109048134	109048134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcatagaaaggcagcaacAccccattgctagtgtccatc	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	109048134	109048134	A	C	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	missense	c.962	p.V321G	1.000	pfam_DUF1900,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	164	0	0	113	23	16.91	-	-	-	C	109048134	A	C	109048134	3	2	232	1	0	0	0	0	1	0	0	0	3785	159	6	5	641	5	CORO1C	12	109048134	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1967343	109048134	24803761	1980	17506										
USP30	0	genome.wustl.edu	37	chr12	109510140	109510140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaataactcccaaacaaattAcctgccgcacaagaggtagc	6	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	109510140	109510140	A	C	SNP	USP30	ENST00000257548	human	ensembl	69_37n	1	known	missense	c.610	p.T204P	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP30	HGNC	ENSG00000135093	194	1	0.51	186	45	19.48	-	-	-	C	109510140	A	C	109510140	3	2	232	1	0	0	0	0	1	0	0	0	17158	391	14	5	632	5	USP30	12	109510140	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	462006	109510140	24341755	1981	17507										
ACACB	0	genome.wustl.edu	37	chr12	109702121	109702121	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctgctccccatctaccAccaggtggcggtgcagttcg	11	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	109702121	109702121	A	C	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.6872	p.H2291P	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	105	1	0.94	89	24	21.05	-	-	-	C	109702121	A	C	109702121	3	2	232	1	0	0	0	0	1	0	0	0	107	159	6	5	7066	5	ACACB	12	109702121	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	191981	109702121	24149774	1982	17508										
UBE3B	0	genome.wustl.edu	37	chr12	109926431	109926431	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtacctcacgatgcttgtcAccttcacagacacttcaacg	6	14	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	109926431	109926431	A	C	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.502	p.T168P	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	339	1	0.29	227	31	12.02	-	-	-	C	109926431	A	C	109926431	3	2	232	1	0	0	0	0	1	0	0	0	16977	159	6	5	520	5	UBE3B	12	109926431	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	224310	109926431	23925464	1983	17509										
CCDC63	0	genome.wustl.edu	37	chr12	111321894	111321894	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagttttgagagctatgaggTggcccacctccggctgctga	14	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	111321894	111321894	T	G	SNP	CCDC63	ENST00000308208	human	ensembl	69_37n	1	known	missense	c.914	p.V305G	1.000	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	169	1	0.58	201	27	11.74	-	-	-	G	111321894	T	G	111321894	3	3	232	1	0	0	0	0	1	0	0	0	2861	1696	59	5	940	5	CCDC63	12	111321894	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1395463	111321894	22530001	1984	17510										
CUX2	0	genome.wustl.edu	37	chr12	111785437	111785437	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccactcccacccagaccccAccccgcagagccctgactct	6	23	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	111785437	111785437	A	C	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	missense	c.3769	p.T1257P	0.086	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	31	0	0	28	10	26.32	-	-	-	C	111785437	A	C	111785437	3	2	232	1	0	0	0	0	1	0	0	0	4096	159	6	5	3855	5	CUX2	12	111785437	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	463543	111785437	22066458	1985	17511										
CUX2	0	genome.wustl.edu	37	chr12	111785940	111785940	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcccatctccccatccccAcctggcgccccccctgccaa	5	25	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	111785940	111785940	A	C	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	silent	c.4272	p.P1424	0.964	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	64	0	0	59	14	19.18	-	-	-	C	111785940	A	C	111785940	2	2	232	1	0	0	0	0	0	0	0	1	4096	146	6	5		5	CUX2	12	111785940	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	503	111785940	22065955	1986	17512										
ACAD10	0	genome.wustl.edu	37	chr12	112140024	112140024	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaaaggccttgatggaaggTggtgaaaatgggccctggat	15	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	112140024	112140024	T	G	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	silent	c.246	p.G82	0.940	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	123	0	0	149	25	14.37	-	-	-	G	112140024	T	G	112140024	2	3	232	1	0	0	0	0	0	0	0	1	108	1683	59	5		5	ACAD10	12	112140024	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	354084	112140024	21711871	1987	17513										
TRAFD1	0	genome.wustl.edu	37	chr12	112589751	112589751	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcaggccccagacctgggTgccagcccagctctccttgt	10	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	112589751	112589751	T	G	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.1426	p.C476G	0.152	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	114	0	0	148	23	13.45	-	-	-	G	112589751	T	G	112589751	3	3	232	1	0	0	0	0	1	0	0	0	16543	1696	59	5	1460	5	TRAFD1	12	112589751	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	449727	112589751	21262144	1988	17514										
RPH3A	0	genome.wustl.edu	37	chr12	113285524	113285524	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggcaggctggtccgtccAccccggtggtcagcctgaca	13	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	113285524	113285524	A	C	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.107	p.H36P	0.958	pfam_Rabphilin3A_effector_Zn-bd	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	72	0	0	85	21	19.63	-	-	-	C	113285524	A	C	113285524	3	2	232	1	0	0	0	0	1	0	0	0	13637	159	6	5	117	5	RPH3A	12	113285524	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	695773	113285524	20566371	1989	17515										
OAS3	0	genome.wustl.edu	37	chr12	113400596	113400596	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcccaaggcttccggacggTgctggggctcgtgcaacagc	16	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	113400596	113400596	T	G	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	missense	c.1973	p.V658G	0.001	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	229	2	0.85	190	27	12.39	-	-	-	G	113400596	T	G	113400596	3	3	232	1	0	0	0	0	1	0	0	0	10874	1696	59	5	2007	5	OAS3	12	113400596	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	115072	113400596	20451299	1990	17516										
OAS2	0	genome.wustl.edu	37	chr12	113446925	113446925	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacccagccgaacccacaggTgacgtgggtggaggggaccg	17	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	113446925	113446925	T	G	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	silent	c.1929	p.G643	0.010	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	266	1	0.37	291	61	17.28	-	-	-	G	113446925	T	G	113446925	2	3	232	1	0	0	0	0	0	0	0	1	10873	1683	59	5		5	OAS2	12	113446925	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	46329	113446925	20404970	1991	17517										
MED13L	0	genome.wustl.edu	37	chr12	116403979	116403979	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttggcagttgatacaaaatAcccaagggccaggggctgct	12	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	116403979	116403979	A	C	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.6295	p.Y2099D	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	259	2	0.76	126	44	25.88	-	-	-	C	116403979	A	C	116403979	3	2	232	1	0	0	0	0	1	0	0	0	9502	391	14	5	349	5	MED13L	12	116403979	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2957054	116403979	17447916	1992	17518										
FBXO21	0	genome.wustl.edu	37	chr12	117593716	117593716	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgtgtcccatcatgcaggTggggtcccagccgtagatca	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	117593716	117593716	T	G	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.1576	p.T526P	0.987	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	50	0	0	39	14	25.93	-	-	-	G	117593716	T	G	117593716	3	3	232	1	0	0	0	0	1	0	0	0	5779	1696	59	5	318	5	FBXO21	12	117593716	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1189737	117593716	16258179	1993	17519										
FBXO21	0	genome.wustl.edu	37	chr12	117604763	117604763	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccttcttgacattgaccAccccatacagtgctgcagtc	6	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	117604763	117604763	A	C	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.1133	p.V378G	1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	173	0	0	163	29	15.1	-	-	-	C	117604763	A	C	117604763	3	2	232	1	0	0	0	0	1	0	0	0	5779	159	6	5	773	5	FBXO21	12	117604763	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11047	117604763	16247132	1994	17520										
FBXO21	0	genome.wustl.edu	37	chr12	117612479	117612479	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgaaggccaagctggggTggcgactgtttatgccccga	14	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	117612479	117612479	T	G	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.716	p.H239P	1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	132	1	0.75	125	32	20.25	-	-	-	G	117612479	T	G	117612479	3	3	232	1	0	0	0	0	1	0	0	0	5779	1696	59	5	1202	5	FBXO21	12	117612479	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7716	117612479	16239416	1995	17521										
NOS1	0	genome.wustl.edu	37	chr12	117693788	117693788	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaccgtggacttctgtgtcAccattggggaggggaggccc	16	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	117693788	117693788	A	C	SNP	NOS1	ENST00000338101	human	ensembl	69_37n	-1	novel	silent	c.2586	p.G862	0.000	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	59	0	0	54	11	16.92	-	-	-	C	117693788	A	C	117693788	2	2	232	1	0	0	0	0	0	0	0	1	10613	174	6	5		5	NOS1	12	117693788	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	81309	117693788	16158107	1996	17522										
CIT	0	genome.wustl.edu	37	chr12	120151289	120151289	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtacctgggcaccttcatccAcccttccaggtgcaagctgc	9	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	120151289	120151289	A	C	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.4345	p.W1449G	1.000	smart_Pleckstrin_homology,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	73	0	0	78	20	20.41	-	-	-	C	120151289	A	C	120151289	3	2	232	1	0	0	0	0	1	0	0	0	3468	159	6	5	1798	5	CIT	12	120151289	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2457501	120151289	13700606	1997	17523										
CIT	0	genome.wustl.edu	37	chr12	120221812	120221812	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgactaagcacagcctccAcctctgacactctccgatgt	6	16	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	120221812	120221812	A	C	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.1445	p.V482G	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	359	3	0.82	203	43	17.41	-	-	-	C	120221812	A	C	120221812	3	2	232	1	0	0	0	0	1	0	0	0	3468	159	6	5	4782	5	CIT	12	120221812	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	70523	120221812	13630083	1998	17524										
P2RX7	0	genome.wustl.edu	37	chr12	121622339	121622339	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaagccgggggcctgcatcAccacctcagagctgttcagg	12	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	121622339	121622339	A	C	SNP	P2RX7	ENST00000546057	human	ensembl	69_37n	1	known	missense	c.1522	p.T508P	1.000	prints_P2X7_purnocptor	pfam_P2X_purnocptor,prints_P2X7_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX7	HGNC	ENSG00000089041	61	0	0	51	16	23.53	-	-	-	C	121622339	A	C	121622339	3	2	232	1	0	0	0	0	1	0	0	0	11418	159	6	5	1572	5	P2RX7	12	121622339	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1400527	121622339	12229556	1999	17525										
P2RX4	0	genome.wustl.edu	37	chr12	121666904	121666904	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctggctacaatttcaggTgggcgtgagcttgggcccct	13	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	121666904	121666904	T	G	SNP	P2RX4	ENST00000337233	human	ensembl	69_37n	1	known	splice_site	c.884+2	e8+2	1.000	-	-	-	no_errors	P2RX4	HGNC	ENSG00000135124	60	0	0	66	8	10.67	-	-	-	G	121666904	T	G	121666904	5	3	232	1	0	0	0	0	0	0	1	0	11415	1710	59	5	916	5	P2RX4	12	121666904	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	44565	121666904	12184991	2000	17526										
ANAPC5	0	genome.wustl.edu	37	chr12	121746192	121746192	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtttattgacaagatagggTgtcacaaatacatcatttat	7	5	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	121746192	121746192	T	G	SNP	ANAPC5	ENST00000543649	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANAPC5	HGNC	ENSG00000089053	25	0	0	30	6	16.67	-	-	-	G	121746192	T	G	121746192	1	3	232	0	1	0	0	0	0	0	0	0	605	1711	59	5		5	ANAPC5	12	121746192	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	79288	121746192	12105703	2001	17527										
RNF34	0	genome.wustl.edu	37	chr12	121854108	121854108	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgagttttccacctacccAccagcagctacggaagggcc	9	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	121854108	121854108	A	C	SNP	RNF34	ENST00000392465	human	ensembl	69_37n	1	known	silent	c.156	p.P52	0.998	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF34	HGNC	ENSG00000170633	182	0	0	199	39	16.32	-	-	-	C	121854108	A	C	121854108	2	2	232	1	0	0	0	0	0	0	0	1	13575	146	6	5		5	RNF34	12	121854108	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	107916	121854108	11997787	2002	17528										
DNAH10	0	genome.wustl.edu	37	chr12	124325927	124325927	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgatagtggagaaaaactggTgtccgcgatgatttcagcag	13	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	124325927	124325927	T	G	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.4841	p.V1614G	0.489	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	171	1	0.58	153	27	15	-	-	-	G	124325927	T	G	124325927	3	3	232	1	0	0	0	0	1	0	0	0	4634	1696	59	5	4955	5	DNAH10	12	124325927	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2471819	124325927	9525968	2003	17529										
DNAH10	0	genome.wustl.edu	37	chr12	124330672	124330672	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctggtcatcacgcccctcAccgatcggatttacctgacg	10	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	124330672	124330672	A	C	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.5431	p.T1811P	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	68	0	0	83	18	17.48	-	-	-	C	124330672	A	C	124330672	3	2	232	1	0	0	0	0	1	0	0	0	4634	159	6	5	5553	5	DNAH10	12	124330672	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4745	124330672	9521223	2004	17530										
DNAH10	0	genome.wustl.edu	37	chr12	124337866	124337866	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcggtgctggtcatggctggTgagctgaagagaggctcctc	16	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	124337866	124337866	T	G	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.6051	p.G2017	0.010	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	15	0	0	18	6	25	-	-	-	G	124337866	T	G	124337866	2	3	232	1	0	0	0	0	0	0	0	1	4634	1683	59	5		5	DNAH10	12	124337866	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7194	124337866	9514029	2005	17531										
SCARB1	0	genome.wustl.edu	37	chr12	125292371	125292371	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcagaagccttcgttgggTgggtagatggacccgttggc	18	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	125292371	125292371	T	G	SNP	SCARB1	ENST00000415380	human	ensembl	69_37n	-1	known	silent	c.945	p.P315	0.329	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	109	1	0.91	83	15	15.15	-	-	-	G	125292371	T	G	125292371	2	3	232	1	0	0	0	0	0	0	0	1	13968	1683	59	5		5	SCARB1	12	125292371	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	954505	125292371	8559524	2006	17532										
AACS	0	genome.wustl.edu	37	chr12	125613914	125613914	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggagagagcggcgagctggTgtgtactaagccgatccctt	16	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	125613914	125613914	T	G	SNP	AACS	ENST00000316519	human	ensembl	69_37n	1	known	missense	c.1457	p.V486G	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	222	1	0.45	146	21	12.5	-	-	-	G	125613914	T	G	125613914	3	3	232	1	0	0	0	0	1	0	0	0	9	1696	59	5	1511	5	AACS	12	125613914	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	321543	125613914	8237981	2007	17533										
TMEM132B	0	genome.wustl.edu	37	chr12	125834837	125834837	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccgggaaggggacacggccAcctttttggtctctctgacc	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	125834837	125834837	A	C	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	missense	c.892	p.T298P	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	226	1	0.44	198	33	14.29	-	-	-	C	125834837	A	C	125834837	3	2	232	1	0	0	0	0	1	0	0	0	16141	159	6	5	898	5	TMEM132B	12	125834837	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	220923	125834837	8017058	2008	17534										
CHFR	0	genome.wustl.edu	37	chr12	133448755	133448755	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgtgagcaagaaatggggTgtagccaggaggaacgttcc	15	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	12	133448755	133448755	T	G	SNP	CHFR	ENST00000536196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	52	0	0	48	16	25	-	-	-	G	133448755	T	G	133448755	1	3	232	0	1	0	0	0	0	0	0	0	3366	1711	59	5		5	CHFR	12	133448755	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7613918	133448755	403140	2009	17535										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20220998	20220998	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaatttgtcgaatcccaggTggaatctgaatcaagtgtac	9	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	20220998	20220998	T	G	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.785	p.V262G	0.071	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	189	1	0.52	225	27	10.67	-	-	-	G	20220998	T	G	20220998	3	3	232	1	0	0	0	0	1	0	0	0	9799	1696	59	5	795	5	MPHOSPH8	13	20220998	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		20220998	94948880	2010	17536										
SACS	0	genome.wustl.edu	37	chr13	23927962	23927962	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttaaagcagccacaaggTgaggtttcaagttatccaaa	8	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	23927962	23927962	T	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.2147	p.H716P	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	119	0	0	90	16	15.09	-	-	-	G	23927962	T	G	23927962	3	3	232	1	0	0	0	0	1	0	0	0	13890	1696	59	5	11600	5	SACS	13	23927962	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3706964	23927962	91241916	2011	17537										
SACS	0	genome.wustl.edu	37	chr13	23929123	23929123	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaacaccggttgccagtgcAccttgactttgctcgcctcc	8	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	23929123	23929123	A	C	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.1628	p.V543G	0.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	167	1	0.59	178	21	10.4	-	-	-	C	23929123	A	C	23929123	3	2	232	1	0	0	0	0	1	0	0	0	13890	159	6	5	12123	5	SACS	13	23929123	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1161	23929123	91240755	2012	17538										
CENPJ	0	genome.wustl.edu	37	chr13	25480610	25480610	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaagaggaagtctgtctttAccttgtgtcttattccaccc	8	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	25480610	25480610	A	C	SNP	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	silent	c.1566	p.G522	0.000	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	177	1	0.56	115	23	16.67	-	-	-	C	25480610	A	C	25480610	2	2	232	1	0	0	0	0	0	0	0	1	3263	378	14	5		5	CENPJ	13	25480610	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1551487	25480610	89689268	2013	17539										
NUPL1	0	genome.wustl.edu	37	chr13	25912953	25912953	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtgttgttatttccagtaAcccaaaaagttccctccctg	6	11	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	25912953	25912953	A	C	SNP	NUPL1	ENST00000466694	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	NUPL1	HGNC	ENSG00000139496	47	0	0	33	5	13.16	-	-	-	C	25912953	A	C	25912953	1	2	232	0	1	0	0	0	0	0	0	0	10847	58	2	5		5	NUPL1	13	25912953	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	432343	25912953	89256925	2014	17540										
SHISA2	0	genome.wustl.edu	37	chr13	26620750	26620750	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcaggccgtccatgaaaggTggcacagctgtcatgggcac	14	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	26620750	26620750	T	G	SNP	SHISA2	ENST00000319420	human	ensembl	69_37n	-1	known	silent	c.789	p.P263	0.023	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730	53	0	0	39	11	22	-	-	-	G	26620750	T	G	26620750	2	3	232	1	0	0	0	0	0	0	0	1	14369	1683	59	5		5	SHISA2	13	26620750	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	707797	26620750	88549128	2015	17541										
RASL11A	0	genome.wustl.edu	37	chr13	27847306	27847306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcacatccggaaggtccAccctgactctaaagcccctg	8	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	27847306	27847306	A	C	SNP	RASL11A	ENST00000241463	human	ensembl	69_37n	1	known	missense	c.404	p.H135P	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11A	HGNC	ENSG00000122035	80	0	0	46	15	24.59	-	-	-	C	27847306	A	C	27847306	3	2	232	1	0	0	0	0	1	0	0	0	13164	159	6	5	418	5	RASL11A	13	27847306	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1226556	27847306	87322572	2016	17542										
FLT1	0	genome.wustl.edu	37	chr13	29001326	29001326	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgattatggttacaggggTgccagaaccacttgattgta	11	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	29001326	29001326	T	G	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.1406	p.H469P	0.617	smart_Ig_sub,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	123	0	0	117	31	20.95	-	-	-	G	29001326	T	G	29001326	3	3	232	1	0	0	0	0	1	0	0	0	5987	1696	59	5	2957	5	FLT1	13	29001326	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1154020	29001326	86168552	2017	17543										
MTUS2	0	genome.wustl.edu	37	chr13	29600551	29600551	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtcccccttggtagttccAccccctactgatagtgcacg	10	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	29600551	29600551	A	C	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.1746	p.P582	0.002	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	197	2	1	130	32	19.75	-	-	-	C	29600551	A	C	29600551	2	2	232	1	0	0	0	0	0	0	0	1	10038	146	6	5		5	MTUS2	13	29600551	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	599225	29600551	85569327	2018	17544										
SLC7A1	0	genome.wustl.edu	37	chr13	30096464	30096464	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtactcaccagcaacggcAcccgaggctaatgtggcgat	11	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	30096464	30096464	A	C	SNP	SLC7A1	ENST00000380752	human	ensembl	69_37n	-1	known	silent	c.1179	p.G393	0.818	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514	133	1	0.75	100	18	15.25	-	-	-	C	30096464	A	C	30096464	2	2	232	1	0	0	0	0	0	0	0	1	14781	146	6	5		5	SLC7A1	13	30096464	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	495913	30096464	85073414	2019	17545										
USPL1	0	genome.wustl.edu	37	chr13	31205503	31205503	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcggaagagttaaagaacAccgtgactggactgtgctcg	12	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	31205503	31205503	A	C	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.760	p.T254P	0.001	pfscan_Peptidase_C19	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	285	2	0.69	209	33	13.64	-	-	-	C	31205503	A	C	31205503	3	2	232	1	0	0	0	0	1	0	0	0	17189	159	6	5	770	5	USPL1	13	31205503	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1109039	31205503	83964375	2020	17546										
BRCA2	0	genome.wustl.edu	37	chr13	32972493	32972493	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtagactgcctttacctccAcctgttagtcccatttgtac	6	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	32972493	32972493	A	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	silent	c.9843	p.P3281	0.966	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	219	1	0.45	247	31	11.15	-	-	-	C	32972493	A	C	32972493	2	2	232	1	0	0	0	0	0	0	0	1	1507	146	6	5		5	BRCA2	13	32972493	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1766990	32972493	82197385	2021	17547										
MAB21L1	0	genome.wustl.edu	37	chr13	36049385	36049385	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaatcccgttcagccgatcAcccaggcaagactcgtccca	7	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	36049385	36049385	A	C	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	silent	c.891	p.G297	0.136	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	126	0	0	84	15	15	-	-	-	C	36049385	A	C	36049385	2	2	232	1	0	0	0	0	0	0	0	1	9208	146	6	5		5	MAB21L1	13	36049385	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3076892	36049385	79120493	2022	17548										
SOHLH2	0	genome.wustl.edu	37	chr13	36744811	36744811	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttgcatcgtaggaaggggTgactttagaataatatctga	12	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	36744811	36744811	T	G	SNP	SOHLH2	ENST00000554962	human	ensembl	69_37n	-1	known	missense	c.1345	p.T449P	0.001	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH2	HGNC	ENSG00000120669	197	1	0.51	142	25	14.97	-	-	-	G	36744811	T	G	36744811	3	3	232	1	0	0	0	0	1	0	0	0	15013	1696	59	5	171	5	SOHLH2	13	36744811	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	695426	36744811	78425067	2023	17549										
SPG20	0	genome.wustl.edu	37	chr13	36878665	36878665	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgtgttgcagttttcttcAccattgctttgataccaatg	7	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	36878665	36878665	A	C	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.1838	p.V613G	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	407	3	0.73	303	34	10.03	-	-	-	C	36878665	A	C	36878665	3	2	232	1	0	0	0	0	1	0	0	0	15133	159	6	5	166	5	SPG20	13	36878665	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	133854	36878665	78291213	2024	17550										
KBTBD6	0	genome.wustl.edu	37	chr13	41705646	41705646	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacatacccagtctctggggTggattttctgctgcagatac	10	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	41705646	41705646	T	G	SNP	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	silent	c.1002	p.P334	0.158	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	181	0	0	157	32	16.93	-	-	-	G	41705646	T	G	41705646	2	3	232	1	0	0	0	0	0	0	0	1	8051	1683	59	5		5	KBTBD6	13	41705646	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4826981	41705646	73464232	2025	17551										
MTRF1	0	genome.wustl.edu	37	chr13	41814470	41814470	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatccttgaggacaggcccAcctcggggatgcgctgaact	13	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	41814470	41814470	A	C	SNP	MTRF1	ENST00000430347	human	ensembl	69_37n	-1	known	missense	c.836	p.V279G	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662	239	1	0.42	201	32	13.73	-	-	-	C	41814470	A	C	41814470	3	2	232	1	0	0	0	0	1	0	0	0	10031	159	6	5	560	5	MTRF1	13	41814470	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	108824	41814470	73355408	2026	17552										
MTRF1	0	genome.wustl.edu	37	chr13	41814502	41814502	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctgaactcggtgaatcccAccctcatacttcaaatgctt	6	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	41814502	41814502	A	C	SNP	MTRF1	ENST00000430347	human	ensembl	69_37n	-1	known	silent	c.804	p.G268	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662	225	1	0.44	192	32	14.29	-	-	-	C	41814502	A	C	41814502	2	2	232	1	0	0	0	0	0	0	0	1	10031	146	6	5		5	MTRF1	13	41814502	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32	41814502	73355376	2027	17553										
DGKH	0	genome.wustl.edu	37	chr13	42729872	42729872	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctcccacgcccgacccAccttctgtaacgtgtgcaga	8	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	42729872	42729872	A	C	SNP	DGKH	ENST00000337343	human	ensembl	69_37n	1	known	missense	c.559	p.T187P	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	141	1	0.7	87	20	18.69	-	-	-	C	42729872	A	C	42729872	3	2	232	1	0	0	0	0	1	0	0	0	4506	159	6	5	577	5	DGKH	13	42729872	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	915370	42729872	72440006	2028	17554										
CPB2	0	genome.wustl.edu	37	chr13	46627811	46627811	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaaagcttctctacaggTgggtttgatgtaacgctccg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	46627811	46627811	T	G	SNP	CPB2	ENST00000181383	human	ensembl	69_37n	-1	known	missense	c.1210	p.T404P	0.997	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618	177	0	0	122	25	17.01	-	-	-	G	46627811	T	G	46627811	3	3	232	1	0	0	0	0	1	0	0	0	3827	1696	59	5	65	5	CPB2	13	46627811	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3897939	46627811	68542067	2029	17555	190	2								
CPB2	0	genome.wustl.edu	37	chr13	46627815	46627815	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagcttctctacaggtgggTttgatgtaacgctccggcag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	46627815	46627815	T	G	SNP	CPB2	ENST00000181383	human	ensembl	69_37n	-1	known	missense	c.1206	p.K402N	0.206	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618	171	1	0.58	112	25	18.25	-	-	-	G	46627815	T	G	46627815	3	3	232	1	0	0	0	0	1	0	0	0	3827	1725	60	5	69	5	CPB2	13	46627815	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4	46627815	68542063	2030	17556	190	2								
LCP1	0	genome.wustl.edu	37	chr13	46722523	46722523	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaataacaacagcaggaacAccttcttcatctccttttgg	5	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	46722523	46722523	A	C	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	silent	c.942	p.G314	0.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	651	5	0.76	498	65	11.52	-	-	-	C	46722523	A	C	46722523	2	2	232	1	0	0	0	0	0	0	0	1	8745	146	6	5		5	LCP1	13	46722523	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	94708	46722523	68447355	2031	17557										
LRCH1	0	genome.wustl.edu	37	chr13	47315872	47315872	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcactcggggagaaagccccAccaccaacttctgccctccg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	47315872	47315872	A	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	silent	c.2076	p.P692	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	446	3	0.67	330	55	14.21	-	-	-	C	47315872	A	C	47315872	2	2	232	1	0	0	0	0	0	0	0	1	8998	146	6	5		5	LRCH1	13	47315872	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	593349	47315872	67854006	2032	17558	191	2								
LRCH1	0	genome.wustl.edu	37	chr13	47315875	47315875	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcggggagaaagccccaccAccaacttctgccctccgctc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	47315875	47315875	A	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	silent	c.2079	p.P693	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	456	0	0	324	53	14.06	-	-	-	C	47315875	A	C	47315875	2	2	232	1	0	0	0	0	0	0	0	1	8998	146	6	5		5	LRCH1	13	47315875	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	47315875	67854003	2033	17559	191	2								
INTS6	0	genome.wustl.edu	37	chr13	51948402	51948402	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttgagttgtaggtgcaggTggtccttttcccccaatatg	12	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	51948402	51948402	T	G	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	silent	c.2046	p.P682	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	267	1	0.37	214	44	17.05	-	-	-	G	51948402	T	G	51948402	2	3	232	1	0	0	0	0	0	0	0	1	7836	1683	59	5		5	INTS6	13	51948402	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4632527	51948402	63221476	2034	17560										
ATP7B	0	genome.wustl.edu	37	chr13	52509062	52509062	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccctgggggagtcccgccAcctgtcatccatgcctatgt	12	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	52509062	52509062	A	C	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	missense	c.4228	p.W1410G	0.953	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	60	0	0	47	11	18.97	-	-	-	C	52509062	A	C	52509062	3	2	232	1	0	0	0	0	1	0	0	0	1195	159	6	5	173	5	ATP7B	13	52509062	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	560660	52509062	62660816	2035	17561										
TDRD3	0	genome.wustl.edu	37	chr13	61141757	61141757	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccaacagttttaccaaccAccccgggctcggaactaata	6	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	61141757	61141757	A	C	SNP	TDRD3	ENST00000535286	human	ensembl	69_37n	1	known	silent	c.2217	p.P739	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	110	0	0	115	20	14.81	-	-	-	C	61141757	A	C	61141757	2	2	232	1	0	0	0	0	0	0	0	1	15827	146	6	5		5	TDRD3	13	61141757	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8632695	61141757	54028121	2036	17562										
PCDH20	0	genome.wustl.edu	37	chr13	61986585	61986585	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttagtcaaaaaggcattgggTgagttgttctcttcgatggt	12	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	61986585	61986585	T	G	SNP	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	silent	c.1647	p.S549	0.558	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	343	1	0.29	182	30	14.08	-	-	-	G	61986585	T	G	61986585	2	3	232	1	0	0	0	0	0	0	0	1	11588	1683	59	5		5	PCDH20	13	61986585	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	844828	61986585	53183293	2037	17563										
PCDH20	0	genome.wustl.edu	37	chr13	61987043	61987043	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtccattagcaaggatggTgagcttgtgggactccagaa	14	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	61987043	61987043	T	G	SNP	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	missense	c.1189	p.T397P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	317	0	0	213	32	13.06	-	-	-	G	61987043	T	G	61987043	3	3	232	1	0	0	0	0	1	0	0	0	11588	1696	59	5	1670	5	PCDH20	13	61987043	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	458	61987043	53182835	2038	17564										
PCDH20	0	genome.wustl.edu	37	chr13	61987648	61987648	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctctgatggcgatcttcAccttcacaaacctgaagtat	7	11	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	61987648	61987648	A	C	SNP	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	missense	c.584	p.V195G	1.000	pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	161	0	0	126	20	13.7	-	-	-	C	61987648	A	C	61987648	3	2	232	1	0	0	0	0	1	0	0	0	11588	159	6	5	2275	5	PCDH20	13	61987648	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	605	61987648	53182230	2039	17565										
PCDH9	0	genome.wustl.edu	37	chr13	67802048	67802048	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacaattcataatgctgtacAccattgaagcctgtgtcagg	8	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	67802048	67802048	A	C	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	silent	c.525	p.G175	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	200	0	0	140	17	10.83	-	-	-	C	67802048	A	C	67802048	2	2	232	1	0	0	0	0	0	0	0	1	11591	146	6	5		5	PCDH9	13	67802048	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5814400	67802048	47367830	2040	17566										
KLHL1	0	genome.wustl.edu	37	chr13	70314611	70314611	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgttgactctgtggatcccAcctttccactgtattcagat	7	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	70314611	70314611	A	C	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.1717	p.W573G	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	115	1	0.86	82	23	21.9	-	-	-	C	70314611	A	C	70314611	3	2	232	1	0	0	0	0	1	0	0	0	8418	159	6	5	545	5	KLHL1	13	70314611	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2512563	70314611	44855267	2041	17567										
DACH1	0	genome.wustl.edu	37	chr13	72440234	72440234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaccgtatgcaagccccccAccaagtgcttcaggaacagg	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	72440234	72440234	A	C	SNP	DACH1	ENST00000359684	human	ensembl	69_37n	-1	known	missense	c.674	p.V225G	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	49	0	0	34	9	20.93	-	-	-	C	72440234	A	C	72440234	3	2	232	1	0	0	0	0	1	0	0	0	4252	159	6	5	1496	5	DACH1	13	72440234	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2125623	72440234	42729644	2042	17568										
SCEL	0	genome.wustl.edu	37	chr13	78133959	78133959	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatgaaaattacggtagggTggtgctcaaccgacataatt	11	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	78133959	78133959	T	G	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.182	p.V61G	1.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	274	1	0.36	237	44	15.66	-	-	-	G	78133959	T	G	78133959	3	3	232	1	0	0	0	0	1	0	0	0	13975	1696	59	5	192	5	SCEL	13	78133959	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5693725	78133959	37035919	2043	17569										
SCEL	0	genome.wustl.edu	37	chr13	78184243	78184243	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaacagaactaaccaagggTaaggtttatggaactctcta	9	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	78184243	78184243	T	G	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	splice_site	c.1337+2	e21+2	1.000	-	-	-	no_errors	SCEL	HGNC	ENSG00000136155	145	0	0	105	17	13.82	-	-	-	G	78184243	T	G	78184243	5	3	232	1	0	0	0	0	0	0	1	0	13975	1652	57	5	1421	5	SCEL	13	78184243	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	50284	78184243	36985635	2044	17570										
SLITRK5	0	genome.wustl.edu	37	chr13	88329391	88329391	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgggtggagcagctcaaagTgggcgtcctagtggacgagg	19	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	88329391	88329391	T	G	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	missense	c.1748	p.V583G	0.998	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	188	0	0	132	21	13.64	-	-	-	G	88329391	T	G	88329391	3	3	232	1	0	0	0	0	1	0	0	0	14835	1696	59	5	1750	5	SLITRK5	13	88329391	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10145148	88329391	26840487	2045	17571										
DOCK9	0	genome.wustl.edu	37	chr13	99515727	99515727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcctggagggctgtccccAcctccctcagtaacagtccc	8	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	99515727	99515727	A	C	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.3365	p.V1122G	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	259	0	0	175	36	16.98	-	-	-	C	99515727	A	C	99515727	3	2	232	1	0	0	0	0	1	0	0	0	4729	159	6	5	3009	5	DOCK9	13	99515727	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11186336	99515727	15654151	2046	17572										
NALCN	0	genome.wustl.edu	37	chr13	101742234	101742234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taataacatctctcacttccAcccagcctttcaaggagaga	5	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	101742234	101742234	A	C	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3353	p.V1118G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	611	1	0.16	485	58	10.66	-	-	-	C	101742234	A	C	101742234	3	2	232	1	0	0	0	0	1	0	0	0	10220	159	6	5	1927	5	NALCN	13	101742234	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2226507	101742234	13427644	2047	17573										
NALCN	0	genome.wustl.edu	37	chr13	102051449	102051449	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtgactggctgggcttccAccctggaactctgcttcctt	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	102051449	102051449	A	C	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.29	p.V10G	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	161	0	0	127	21	14.19	-	-	-	C	102051449	A	C	102051449	3	2	232	1	0	0	0	0	1	0	0	0	10220	159	6	5	5359	5	NALCN	13	102051449	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	309215	102051449	13118429	2048	17574										
ITGBL1	0	genome.wustl.edu	37	chr13	102227836	102227836	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagtggacttgtgtatggTaaattttgtgagtgtgacga	15	2	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	102227836	102227836	T	G	SNP	ITGBL1	ENST00000376180	human	ensembl	69_37n	1	known	silent	c.525	p.G175	0.998	pfam_EGF_extracell,smart_EGF-like	pfam_EGF_extracell,smart_EGF-like	-	no_errors	ITGBL1	HGNC	ENSG00000198542	260	1	0.38	214	34	13.71	-	-	-	G	102227836	T	G	102227836	2	3	232	1	0	0	0	0	0	0	0	1	7956	1625	57	5		5	ITGBL1	13	102227836	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	176387	102227836	12942042	2049	17575										
ITGBL1	0	genome.wustl.edu	37	chr13	102345100	102345100	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgcatgcaacttgctttAcctgcctttgttattctact	5	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	102345100	102345100	A	C	SNP	ITGBL1	ENST00000474233	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITGBL1	HGNC	ENSG00000198542	194	1	0.51	111	23	17.04	-	-	-	C	102345100	A	C	102345100	1	2	232	0	1	0	0	0	0	0	0	0	7956	406	14	5		5	ITGBL1	13	102345100	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	117264	102345100	12824778	2050	17576										
PCID2	0	genome.wustl.edu	37	chr13	113845123	113845123	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taaacacaggccagaaagggTgaacgctgcaatgaaaacac	10	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	113845123	113845123	T	G	SNP	PCID2	ENST00000491548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCID2	HGNC	ENSG00000126226	27	0	0	34	13	27.66	-	-	-	G	113845123	T	G	113845123	1	3	232	0	1	0	0	0	0	0	0	0	11652	1711	59	5		5	PCID2	13	113845123	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11500023	113845123	1324755	2051	17577										
DCUN1D2	0	genome.wustl.edu	37	chr13	114112365	114112365	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagaaaaggctgcgttttccAcctgtgactactggccgtgc	11	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	13	114112365	114112365	A	C	SNP	DCUN1D2	ENST00000478244	human	ensembl	69_37n	-1	known	silent	c.759	p.G253	0.003	NULL	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D2	HGNC	ENSG00000150401	185	0	0	136	22	13.92	-	-	-	C	114112365	A	C	114112365	2	2	232	1	0	0	0	0	0	0	0	1	4345	146	6	5		5	DCUN1D2	13	114112365	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	267242	114112365	1057513	2052	17578										
OR4M1	0	genome.wustl.edu	37	chr14	20249202	20249202	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataccaacagggccatgtccAcctgctattcccacattacc	5	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20249202	20249202	A	C	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	missense	c.721	p.T241P	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	490	3	0.61	364	56	13.3	-	-	-	C	20249202	A	C	20249202	3	2	232	1	0	0	0	0	1	0	0	0	11148	159	6	5	723	5	OR4M1	14	20249202	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		20249202	87100338	2053	17579										
OR4N2	0	genome.wustl.edu	37	chr14	20296469	20296469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttgaatcctgtcatttatAcccttcgcaaccaggaagtg	8	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20296469	20296469	A	C	SNP	OR4N2	ENST00000315947	human	ensembl	69_37n	1	known	missense	c.862	p.T288P	0.995	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	346	1	0.29	237	53	18.28	-	-	-	C	20296469	A	C	20296469	3	2	232	1	0	0	0	0	1	0	0	0	11150	391	14	5	864	5	OR4N2	14	20296469	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	47267	20296469	87053071	2054	17580										
OR4K2	0	genome.wustl.edu	37	chr14	20344658	20344658	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctcttgcttctttcgccAccccaaagatgattacagat	6	12	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20344658	20344658	A	C	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.232	p.T78P	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	595	3	0.5	552	63	10.23	-	-	-	C	20344658	A	C	20344658	3	2	232	1	0	0	0	0	1	0	0	0	11145	159	6	5	234	5	OR4K2	14	20344658	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	48189	20344658	87004882	2055	17581										
OR4K2	0	genome.wustl.edu	37	chr14	20344740	20344740	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacccagatattctttctccAccttttcactggaactgaga	5	12	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20344740	20344740	A	C	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.314	p.H105P	0.688	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	585	2	0.34	474	70	12.84	-	-	-	C	20344740	A	C	20344740	3	2	232	1	0	0	0	0	1	0	0	0	11145	159	6	5	316	5	OR4K2	14	20344740	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	82	20344740	87004800	2056	17582										
OR4K1	0	genome.wustl.edu	37	chr14	20403851	20403851	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacacaaatgaatcgatggTgtctgagtttgtacttttgg	10	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20403851	20403851	T	G	SNP	OR4K1	ENST00000285600	human	ensembl	69_37n	1	known	missense	c.26	p.V9G	0.235	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	648	2	0.31	450	59	11.59	-	-	-	G	20403851	T	G	20403851	3	3	232	1	0	0	0	0	1	0	0	0	11140	1696	59	5	28	5	OR4K1	14	20403851	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	59111	20403851	86945689	2057	17583										
OR4K1	0	genome.wustl.edu	37	chr14	20404057	20404057	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgtcagtctaactttgccAcccccaagatgcttgtagac	7	13	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20404057	20404057	A	C	SNP	OR4K1	ENST00000285600	human	ensembl	69_37n	1	known	missense	c.232	p.T78P	0.034	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	509	3	0.58	374	59	13.56	-	-	-	C	20404057	A	C	20404057	3	2	232	1	0	0	0	0	1	0	0	0	11140	159	6	5	234	5	OR4K1	14	20404057	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	206	20404057	86945483	2058	17584										
OR4L1	0	genome.wustl.edu	37	chr14	20528783	20528783	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcttgcattgaaacatacAccctggaattatttgtcatt	6	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20528783	20528783	A	C	SNP	OR4L1	ENST00000315683	human	ensembl	69_37n	1	known	missense	c.580	p.T194P	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4L1	HGNC	ENSG00000176246	212	1	0.47	165	34	17.09	-	-	-	C	20528783	A	C	20528783	3	2	232	1	0	0	0	0	1	0	0	0	11147	159	6	5	582	5	OR4L1	14	20528783	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	124726	20528783	86820757	2059	17585										
TEP1	0	genome.wustl.edu	37	chr14	20874451	20874451	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agattcagagtctccagaggTgagcttcacggccagatcct	11	11	3	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20874451	20874451	T	G	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.676	p.T226P	0.004	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	271	0	0	223	26	10.44	-	-	-	G	20874451	T	G	20874451	3	3	232	1	0	0	0	0	1	0	0	0	15854	1696	59	5	7419	5	TEP1	14	20874451	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	345668	20874451	86475089	2060	17586										
OSGEP	0	genome.wustl.edu	37	chr14	20915635	20915635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgtccagcccgaaacatcTcccagccagcctgggctatc	9	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20915635	20915635	T	C	SNP	OSGEP	ENST00000206542	human	ensembl	69_37n	-1	known	missense	c.914	p.E305G	1.000	NULL	pfam_Peptidase_M22,prints_Peptidase_M22_subgr,tigrfam_Peptidase_M22_subgr	-	no_errors	OSGEP	HGNC	ENSG00000092094	252	2	0.79	261	55	17.3	-	-	-	C	20915635	T	C	20915635	3	2	232	1	0	0	0	0	1	0	0	0	11360	1551	54	5	101	5	OSGEP	14	20915635	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	41184	20915635	86433905	2061	17587										
TMEM55B	0	genome.wustl.edu	37	chr14	20926740	20926740	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggagaagttctggacagggTggctgaccttcatacaggcc	14	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20926740	20926740	T	G	SNP	TMEM55B	ENST00000398020	human	ensembl	69_37n	-1	known	missense	c.833	p.H278P	1.000	NULL	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55B	HGNC	ENSG00000165782	56	0	0	19	17	47.22	-	-	-	G	20926740	T	G	20926740	3	3	232	1	0	0	0	0	1	0	0	0	16277	1696	59	5	25	5	TMEM55B	14	20926740	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11105	20926740	86422800	2062	17588										
TMEM55B	0	genome.wustl.edu	37	chr14	20927382	20927382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacggcaaggccagtggcagTgactgccaaaagcaagccaa	12	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	20927382	20927382	T	G	SNP	TMEM55B	ENST00000398020	human	ensembl	69_37n	-1	known	missense	c.694	p.T232P	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55B	HGNC	ENSG00000165782	128	0	0	77	12	13.19	-	-	-	G	20927382	T	G	20927382	3	3	232	1	0	0	0	0	1	0	0	0	16277	1696	59	5	168	5	TMEM55B	14	20927382	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	642	20927382	86422158	2063	17589										
RNASE4	0	genome.wustl.edu	37	chr14	21167836	21167836	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagatgaactgccatgagggTgtagtgaaggtcacagattg	14	5	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	21167836	21167836	T	G	SNP	RNASE4	ENST00000304704	human	ensembl	69_37n	1	known	silent	c.306	p.G102	0.983	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE4	HGNC	ENSG00000181784	345	0	0	261	41	13.53	-	-	-	G	21167836	T	G	21167836	2	3	232	1	0	0	0	0	0	0	0	1	13492	1683	59	5		5	RNASE4	14	21167836	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	240454	21167836	86181704	2064	17590										
HNRNPC	0	genome.wustl.edu	37	chr14	21679531	21679531	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgtccctgagcccccctccAccacctttttctttcctttc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	21679531	21679531	A	C	SNP	HNRNPC	ENST00000336053	human	ensembl	69_37n	-1	putative	missense	c.832	p.W278G	0.981	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	318	2	0.62	200	54	21.26	-	-	-	C	21679531	A	C	21679531	3	2	232	1	0	0	0	0	1	0	0	0	7313	174	6	5		5	HNRNPC	14	21679531	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	511695	21679531	85670009	2065	17591	192	2								
HNRNPC	0	genome.wustl.edu	37	chr14	21679534	21679534	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccctgagcccccctccaccAcctttttctttcctttcccg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	21679534	21679534	A	C	SNP	HNRNPC	ENST00000336053	human	ensembl	69_37n	-1	putative	missense	c.829	p.W277G	0.979	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	315	3	0.93	179	76	29.69	-	-	-	C	21679534	A	C	21679534	3	2	232	1	0	0	0	0	1	0	0	0	7313	174	6	5		5	HNRNPC	14	21679534	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	21679534	85670006	2066	17592	192	2								
CHD8	0	genome.wustl.edu	37	chr14	21897307	21897307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttttgctgtggctgctgcAcctgcagctggatagttact	11	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	21897307	21897307	A	C	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.1031	p.V344G	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	91	0	0	49	16	24.62	-	-	-	C	21897307	A	C	21897307	3	2	232	1	0	0	0	0	1	0	0	0	3360	159	6	5	6858	5	CHD8	14	21897307	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	217773	21897307	85452233	2067	17593										
C14orf93	0	genome.wustl.edu	37	chr14	23467939	23467939	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actttcccttgcctcaggtcAcccacttcctcctggagacg	7	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	23467939	23467939	A	C	SNP	C14orf93	ENST00000299088	human	ensembl	69_37n	-1	known	silent	c.294	p.G98	0.993	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802	41	0	0	59	13	18.06	-	-	-	C	23467939	A	C	23467939	2	2	232	1	0	0	0	0	0	0	0	1	1794	146	6	5		5	C14orf93	14	23467939	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1570632	23467939	83881601	2068	17594										
PSMB5	0	genome.wustl.edu	37	chr14	23495423	23495423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgagtaggcatctctgtaggTggcttggtagatggctcgac	15	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	23495423	23495423	T	G	SNP	PSMB5	ENST00000361611	human	ensembl	69_37n	-1	known	missense	c.667	p.T223P	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB5	HGNC	ENSG00000100804	196	1	0.5	267	40	12.99	-	-	-	G	23495423	T	G	23495423	3	3	232	1	0	0	0	0	1	0	0	0	12760	1696	59	5	128	5	PSMB5	14	23495423	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	27484	23495423	83854117	2069	17595										
ACIN1	0	genome.wustl.edu	37	chr14	23533682	23533682	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcactgtttccagctggcAcccccttggtagctgctgtc	10	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	23533682	23533682	A	C	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.2498	p.V833G	0.968	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	102	1	0.97	139	35	19.89	-	-	-	C	23533682	A	C	23533682	3	2	232	1	0	0	0	0	1	0	0	0	142	159	6	5	1563	5	ACIN1	14	23533682	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38259	23533682	83815858	2070	17596										
MYH7	0	genome.wustl.edu	37	chr14	23901706	23901706	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgtgatcaggatggactggTtttctctgtctgtggggaga	15	6	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	23901706	23901706	T	G	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.512	p.N171T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	124	0	0	138	23	14.02	-	-	-	G	23901706	T	G	23901706	3	3	232	1	0	0	0	0	1	0	0	0	10111	1725	60	5	5435	5	MYH7	14	23901706	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	368024	23901706	83447834	2071	17597										
AP1G2	0	genome.wustl.edu	37	chr14	24035549	24035549	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacctctggggccaggtctcGgcacatctcagcagagccca	11	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24035549	24035549	G	A	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	nonsense	c.409	p.R137*	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	156	1	0.64	107	37	25.69	-	-	-	A	24035549	G	A	24035549	4	1	232	1	0	0	0	0	0	1	0	0	734	1124	39	1	2024	1	AP1G2	14	24035549	Nonsense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	133843	24035549	83313991	2072	17598										
DHRS2	0	genome.wustl.edu	37	chr14	24108206	24108206	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagccgtggtcacggggtccAccagtgggtgagtgctggat	17	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24108206	24108206	A	C	SNP	DHRS2	ENST00000344777	human	ensembl	69_37n	1	known	missense	c.133	p.T45P	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS2	HGNC	ENSG00000100867	82	0	0	39	10	20.41	-	-	-	C	24108206	A	C	24108206	3	2	232	1	0	0	0	0	1	0	0	0	4526	159	6	5	135	5	DHRS2	14	24108206	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	72657	24108206	83241334	2073	17599										
TM9SF1	0	genome.wustl.edu	37	chr14	24663986	24663986	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggtccccatccagcacttcAcccaggctaaggcttttgtg	9	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24663986	24663986	A	C	SNP	TM9SF1	ENST00000556387	human	ensembl	69_37n	-1	known	silent	c.867	p.G289	0.902	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	455	2	0.44	362	45	10.98	-	-	-	C	24663986	A	C	24663986	2	2	232	1	0	0	0	0	0	0	0	1	16072	146	6	5		5	TM9SF1	14	24663986	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	555780	24663986	82685554	2074	17600										
TGM1	0	genome.wustl.edu	37	chr14	24729843	24729843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctgggctttccagcctccActgccccccttgcccactgg	8	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24729843	24729843	A	C	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.570	p.S190R	0.333	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	45	0	0	26	9	25.71	-	-	-	C	24729843	A	C	24729843	3	2	232	1	0	0	0	0	1	0	0	0	15924	156	6	5	1931	5	TGM1	14	24729843	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	65857	24729843	82619697	2075	17601										
TGM1	0	genome.wustl.edu	37	chr14	24730919	24730919	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accgatgagtaactcaagggTgatgcgatcagaggattcat	12	7	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24730919	24730919	T	G	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.490	p.T164P	0.117	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	62	0	0	30	7	18.42	-	-	-	G	24730919	T	G	24730919	3	3	232	1	0	0	0	0	1	0	0	0	15924	1696	59	5	2015	5	TGM1	14	24730919	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1076	24730919	82618621	2076	17602										
RABGGTA	0	genome.wustl.edu	37	chr14	24736020	24736020	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agccagtgcaggtggcagggTtcggaggcgattgtgtgaca	18	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24736020	24736020	T	G	SNP	RABGGTA	ENST00000216840	human	ensembl	69_37n	-1	known	missense	c.1429	p.T477P	0.017	pfam_Leu-rich_rpt	pfam_Prenyl_trans_a,pfam_RabGGT_asu_insert-domain,pfam_Leu-rich_rpt,superfamily_RabGGT_asu_insert-domain,pfscan_Prenyl_trans_a	-	no_errors	RABGGTA	HGNC	ENSG00000100949	26	0	0	4	6	60	-	-	-	G	24736020	T	G	24736020	3	3	232	1	0	0	0	0	1	0	0	0	13050	1725	60	5	286	5	RABGGTA	14	24736020	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5101	24736020	82613520	2077	17603										
NYNRIN	0	genome.wustl.edu	37	chr14	24877202	24877202	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgctggagcacccttgcctAcctggtgcctggcccccctg	11	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24877202	24877202	A	C	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.326	p.Y109S	0.951	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	55	0	0	55	11	16.67	-	-	-	C	24877202	A	C	24877202	3	2	232	1	0	0	0	0	1	0	0	0	10869	391	14	5	332	5	NYNRIN	14	24877202	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	141182	24877202	82472338	2078	17604										
NYNRIN	0	genome.wustl.edu	37	chr14	24886336	24886336	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtcttcctgctacagctggTgggggagctgctggagctcc	15	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	24886336	24886336	T	G	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.5381	p.V1794G	0.000	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	41	0	0	26	7	21.21	-	-	-	G	24886336	T	G	24886336	3	3	232	1	0	0	0	0	1	0	0	0	10869	1696	59	5	5411	5	NYNRIN	14	24886336	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9134	24886336	82463204	2079	17605										
PRKD1	0	genome.wustl.edu	37	chr14	30046578	30046578	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgcctgcatacttctcccAcctcaggtcatcactttcat	4	17	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	30046578	30046578	A	C	SNP	PRKD1	ENST00000331968	human	ensembl	69_37n	-1	known	missense	c.2605	p.W869G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	198	2	1	114	28	19.72	-	-	-	C	30046578	A	C	30046578	3	2	232	1	0	0	0	0	1	0	0	0	12599	159	6	5	137	5	PRKD1	14	30046578	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5160242	30046578	77302962	2080	17606										
PRKD1	0	genome.wustl.edu	37	chr14	30046591	30046591	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctcccacctcaggtcatcActttcatgggtgatgtagcg	9	12	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	30046591	30046591	A	C	SNP	PRKD1	ENST00000331968	human	ensembl	69_37n	-1	known	missense	c.2592	p.S864R	0.442	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	196	0	0	129	18	12.16	-	-	-	C	30046591	A	C	30046591	3	2	232	1	0	0	0	0	1	0	0	0	12599	156	6	5	150	5	PRKD1	14	30046591	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	30046591	77302949	2081	17607										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562266	32562266	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgtggatcttattctttcAcccttccttgattctcattc	5	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	32562266	32562266	A	C	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	silent	c.2391	p.S797	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	226	0	0	249	32	11.35	-	-	-	C	32562266	A	C	32562266	2	2	232	1	0	0	0	0	0	0	0	1	888	146	6	5		5	ARHGAP5	14	32562266	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2515675	32562266	74787274	2082	17608										
AKAP6	0	genome.wustl.edu	37	chr14	33015946	33015946	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatacaaggctaggcagggTgtctccaagctcatctagtg	12	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	33015946	33015946	T	G	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.2087	p.V696G	0.652	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	209	1	0.48	123	38	23.31	-	-	-	G	33015946	T	G	33015946	3	3	232	1	0	0	0	0	1	0	0	0	455	1696	59	5	2097	5	AKAP6	14	33015946	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	453680	33015946	74333594	2083	17609										
MBIP	0	genome.wustl.edu	37	chr14	36768299	36768299	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggagtttttcatggaaggTggtgggttgccatggattct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	36768299	36768299	T	G	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.1025	p.H342P	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	342	1	0.29	170	56	24.78	-	-	-	G	36768299	T	G	36768299	3	3	232	1	0	0	0	0	1	0	0	0	9420	1696	59	5	13	5	MBIP	14	36768299	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3752353	36768299	70581241	2084	17610	193	2								
MBIP	0	genome.wustl.edu	37	chr14	36768302	36768302	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtttttcatggaaggtggTgggttgccatggattctgct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	36768302	36768302	T	G	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.1022	p.H341P	0.995	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	346	0	0	181	44	19.47	-	-	-	G	36768302	T	G	36768302	3	3	232	1	0	0	0	0	1	0	0	0	9420	1696	59	5	16	5	MBIP	14	36768302	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3	36768302	70581238	2085	17611	193	2								
CTAGE5	0	genome.wustl.edu	37	chr14	39818102	39818102	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctttccccccacctccTccaggagccatgtttggagc	7	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	39818102	39818102	T	C	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.2184	p.P728	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	646	6	0.91	353	79	18.2	-	-	-	C	39818102	T	C	39818102	2	2	232	1	0	0	0	0	0	0	0	1	4026	1538	54	5		5	CTAGE5	14	39818102	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3049800	39818102	67531438	2086	17612										
CTAGE5	0	genome.wustl.edu	37	chr14	39818141	39818141	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttctcgagattattttccAccaggggatttcccaggtcc	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	39818141	39818141	A	C	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.2223	p.P741	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	645	3	0.46	418	69	14.14	-	-	-	C	39818141	A	C	39818141	2	2	232	1	0	0	0	0	0	0	0	1	4026	146	6	5		5	CTAGE5	14	39818141	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	39	39818141	67531399	2087	17613										
CTAGE5	0	genome.wustl.edu	37	chr14	39818165	39818165	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggatttcccaggtccaccAcctgctccatttgcaagtat	9	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	39818165	39818165	A	C	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.2247	p.P749	0.872	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	604	3	0.49	363	69	15.97	-	-	-	C	39818165	A	C	39818165	2	2	232	1	0	0	0	0	0	0	0	1	4026	146	6	5		5	CTAGE5	14	39818165	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	24	39818165	67531375	2088	17614										
CTAGE5	0	genome.wustl.edu	37	chr14	39819417	39819417	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcccctcaggtttgattccAccttcaaatgagcctgctac	6	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	39819417	39819417	A	C	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.2379	p.P793	0.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	507	2	0.39	275	53	16.16	-	-	-	C	39819417	A	C	39819417	2	2	232	1	0	0	0	0	0	0	0	1	4026	146	6	5		5	CTAGE5	14	39819417	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1252	39819417	67530123	2089	17615										
LRFN5	0	genome.wustl.edu	37	chr14	42356629	42356629	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagacctgtgcttctcctccActtttaactggccgctactt	7	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	42356629	42356629	A	C	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	silent	c.801	p.P267	0.999	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	167	0	0	135	19	12.34	-	-	-	C	42356629	A	C	42356629	2	2	232	1	0	0	0	0	0	0	0	1	9007	146	6	5		5	LRFN5	14	42356629	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2537212	42356629	64992911	2090	17616										
FAM179B	0	genome.wustl.edu	37	chr14	45523696	45523696	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacgatctcatactggcagTgttggaaatacaagatcatc	9	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	45523696	45523696	T	G	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.4344	p.S1448R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	90	0	0	69	16	18.82	-	-	-	G	45523696	T	G	45523696	3	3	232	1	0	0	0	0	1	0	0	0	5546	1693	59	5	4402	5	FAM179B	14	45523696	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3167067	45523696	61825844	2091	17617										
CDKL1	0	genome.wustl.edu	37	chr14	50844974	50844974	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctccttagattctaccccAcctccttctagggcccacgg	6	18	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	50844974	50844974	A	C	SNP	CDKL1	ENST00000356146	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CDKL1	HGNC	ENSG00000100490	86	0	0	58	14	19.44	-	-	-	C	50844974	A	C	50844974	1	2	232	0	1	0	0	0	0	0	0	0	3182	174	6	5		5	CDKL1	14	50844974	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5321278	50844974	56504566	2092	17618										
NIN	0	genome.wustl.edu	37	chr14	51259540	51259540	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcttggaactcgggcaaggAccttcgtccgtaacgcttcc	10	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	51259540	51259540	A	C	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.325	p.S109A	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	91	0	0	104	24	18.6	-	-	-	C	51259540	A	C	51259540	3	2	232	1	0	0	0	0	1	0	0	0	10489	275	10	5	6332	5	NIN	14	51259540	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	414566	51259540	56090000	2093	17619										
FRMD6	0	genome.wustl.edu	37	chr14	52194586	52194586	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggacactgctcagagttacAcctttggatgtggccatgaa	11	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	52194586	52194586	A	C	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.1708	p.T570P	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	97	0	0	94	18	16.07	-	-	-	C	52194586	A	C	52194586	3	2	232	1	0	0	0	0	1	0	0	0	6103	159	6	5	1734	5	FRMD6	14	52194586	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	935046	52194586	55154954	2094	17620										
NID2	0	genome.wustl.edu	37	chr14	52478355	52478355	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcaacatctgtccagtacAccatcctctcccggcagtcg	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	52478355	52478355	A	C	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.3467	p.V1156G	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	260	2	0.76	169	32	15.92	-	-	-	C	52478355	A	C	52478355	3	2	232	1	0	0	0	0	1	0	0	0	10487	159	6	5	684	5	NID2	14	52478355	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	283769	52478355	54871185	2095	17621										
FERMT2	0	genome.wustl.edu	37	chr14	53417141	53417141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctactcaccgagtttctccAccagcttaagcatcacgcct	6	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	53417141	53417141	A	C	SNP	FERMT2	ENST00000343279	human	ensembl	69_37n	-1	known	missense	c.146	p.V49G	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712	73	0	0	29	12	29.27	-	-	-	C	53417141	A	C	53417141	3	2	232	1	0	0	0	0	1	0	0	0	5864	159	6	5	1989	5	FERMT2	14	53417141	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	938786	53417141	53932399	2096	17622										
FBXO34	0	genome.wustl.edu	37	chr14	55818683	55818683	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgcatctgaggaaaaaagTgggtctgctgagccatttgt	13	6	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	55818683	55818683	T	G	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.1575	p.S525R	0.000	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	192	1	0.52	185	21	10.1	-	-	-	G	55818683	T	G	55818683	3	3	232	1	0	0	0	0	1	0	0	0	5790	1693	59	5	1577	5	FBXO34	14	55818683	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2401542	55818683	51530857	2097	17623										
KTN1	0	genome.wustl.edu	37	chr14	56146398	56146398	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagaaagagcactaccaggTgttaggtaaggacaactgaa	13	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	56146398	56146398	T	G	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.4064	p.V1355G	0.007	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	271	1	0.36	171	24	12.24	-	-	-	G	56146398	T	G	56146398	3	3	232	1	0	0	0	0	1	0	0	0	8639	1696	59	5	4230	5	KTN1	14	56146398	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	327715	56146398	51203142	2098	17624										
KIAA0586	0	genome.wustl.edu	37	chr14	58965602	58965602	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattctctctatatgcagccAcctgtcactaatacacagtc	4	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	58965602	58965602	A	C	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	silent	c.4047	p.P1349	0.297	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	59	0	0	35	14	28.57	-	-	-	C	58965602	A	C	58965602	2	2	232	1	0	0	0	0	0	0	0	1	8238	146	6	5		5	KIAA0586	14	58965602	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2819204	58965602	48383938	2099	17625										
KIAA0586	0	genome.wustl.edu	37	chr14	59014500	59014500	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcttctcctttgtgcaggTgggaaagcagtgccactctc	12	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	59014500	59014500	T	G	SNP	KIAA0586	ENST00000354386	human	ensembl	69_37n	1	putative	missense	c.4741	p.W1581G	0.674	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	70	0	0	80	19	19.19	-	-	-	G	59014500	T	G	59014500	3	3	232	1	0	0	0	0	1	0	0	0	8238	1710	59	5	4387	5	KIAA0586	14	59014500	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	48898	59014500	48335040	2100	17626										
RTN1	0	genome.wustl.edu	37	chr14	60212606	60212606	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtgtgattttgacaggggTggtgatctgaggagccctgc	16	7	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	60212606	60212606	T	G	SNP	RTN1	ENST00000267484	human	ensembl	69_37n	-1	known	missense	c.835	p.T279P	0.850	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	306	1	0.33	231	42	15.27	-	-	-	G	60212606	T	G	60212606	3	3	232	1	0	0	0	0	1	0	0	0	13811	1696	59	5	1592	5	RTN1	14	60212606	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1198106	60212606	47136934	2101	17627										
PRKCH	0	genome.wustl.edu	37	chr14	62014479	62014479	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttcatgaccaagaaccccAccatgcgcttgggcagcctg	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	62014479	62014479	A	C	SNP	PRKCH	ENST00000332981	human	ensembl	69_37n	1	known	missense	c.1780	p.T594P	0.908	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075	212	0	0	171	27	13.64	-	-	-	C	62014479	A	C	62014479	3	2	232	1	0	0	0	0	1	0	0	0	12594	159	6	5	1830	5	PRKCH	14	62014479	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1801873	62014479	45335061	2102	17628										
SYNE2	0	genome.wustl.edu	37	chr14	64408624	64408624	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgggataaaggatctaatAccttccagtgtagaatcaat	8	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	64408624	64408624	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.259	p.T87P	0.987	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	182	1	0.55	113	20	15.04	-	-	-	C	64408624	A	C	64408624	3	2	232	1	0	0	0	0	1	0	0	0	15538	391	14	5	273	5	SYNE2	14	64408624	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2394145	64408624	42940916	2103	17629										
SYNE2	0	genome.wustl.edu	37	chr14	64449490	64449490	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgaataaaagatggagaaAgttggtttcaaaaactcaac	9	5	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	64449490	64449490	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.1979	p.K660T	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	154	0	0	143	18	11.18	-	-	-	C	64449490	A	C	64449490	3	2	232	1	0	0	0	0	1	0	0	0	15538	72	3	5	2041	5	SYNE2	14	64449490	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	40866	64449490	42900050	2104	17630										
AKAP5	0	genome.wustl.edu	37	chr14	64935421	64935421	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcaaaagccattggagggTgaaatgcaacctgcaataaa	10	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	64935421	64935421	T	G	SNP	AKAP5	ENST00000320636	human	ensembl	69_37n	1	known	silent	c.309	p.G103	0.004	NULL	pfam_Pkinase-A_anch_WSK-motif	-	no_errors	AKAP5	HGNC	ENSG00000179841	124	1	0.8	70	19	21.35	-	-	-	G	64935421	T	G	64935421	2	3	232	1	0	0	0	0	0	0	0	1	454	1683	59	5		5	AKAP5	14	64935421	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	485931	64935421	42414119	2105	17631										
SPTB	0	genome.wustl.edu	37	chr14	65253445	65253445	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaggccacagccttctgggTgatggagagccaggcctgga	16	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	65253445	65253445	T	G	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.3238	p.T1080P	0.875	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	34	0	0	23	6	20.69	-	-	-	G	65253445	T	G	65253445	3	3	232	1	0	0	0	0	1	0	0	0	15209	1696	59	5	3901	5	SPTB	14	65253445	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	318024	65253445	42096095	2106	17632										
SPTB	0	genome.wustl.edu	37	chr14	65261209	65261209	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccctcggtgaacttcagggTggctgcggtgatggccttca	14	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	65261209	65261209	T	G	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.1771	p.T591P	0.991	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	125	1	0.79	92	20	17.86	-	-	-	G	65261209	T	G	65261209	3	3	232	1	0	0	0	0	1	0	0	0	15209	1696	59	5	5380	5	SPTB	14	65261209	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7764	65261209	42088331	2107	17633										
FUT8	0	genome.wustl.edu	37	chr14	66188494	66188494	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgtttcaatattgtcaggTgaagtgaaggacaaaaatgt	10	3	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	66188494	66188494	T	G	SNP	FUT8	ENST00000360689	human	ensembl	69_37n	1	known	silent	c.837	p.G279	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170	161	0	0	76	20	20.83	-	-	-	G	66188494	T	G	66188494	2	3	232	1	0	0	0	0	0	0	0	1	6159	1710	59	5		5	FUT8	14	66188494	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	927285	66188494	41161046	2108	17634										
ZFYVE26	0	genome.wustl.edu	37	chr14	68248166	68248166	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcatgactccaggggccAcctgtccacaaactgtaggg	12	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	68248166	68248166	A	C	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.4453	p.W1485G	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	120	1	0.82	100	24	19.35	-	-	-	C	68248166	A	C	68248166	3	2	232	1	0	0	0	0	1	0	0	0	17764	159	6	5	3250	5	ZFYVE26	14	68248166	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2059672	68248166	39101374	2109	17635										
ZFYVE26	0	genome.wustl.edu	37	chr14	68252704	68252704	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcagttcagtgatgctgcAccgtggagggcctcctccct	12	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	68252704	68252704	A	C	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.3175	p.C1059G	0.992	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	167	0	0	145	26	15.12	-	-	-	C	68252704	A	C	68252704	3	2	232	1	0	0	0	0	1	0	0	0	17764	159	6	5	4544	5	ZFYVE26	14	68252704	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4538	68252704	39096836	2110	17636										
DCAF5	0	genome.wustl.edu	37	chr14	69529213	69529213	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgaaggctccgttgaccAccctaccaatgccacctggg	9	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	69529213	69529213	A	C	SNP	DCAF5	ENST00000341516	human	ensembl	69_37n	-1	known	missense	c.962	p.V321G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	113	0	0	79	26	24.76	-	-	-	C	69529213	A	C	69529213	3	2	232	1	0	0	0	0	1	0	0	0	4305	159	6	5	1874	5	DCAF5	14	69529213	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1276509	69529213	37820327	2111	17637										
GALNTL1	0	genome.wustl.edu	37	chr14	69791485	69791485	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacaatgaggcccgttccAccctgctgcgcacagtgaag	10	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	69791485	69791485	A	C	SNP	GALNTL1	ENST00000337827	human	ensembl	69_37n	1	known	missense	c.412	p.T138P	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL1	HGNC	ENSG00000100626	30	0	0	15	10	40	-	-	-	C	69791485	A	C	69791485	3	2	232	1	0	0	0	0	1	0	0	0	6271	159	6	5	422	5	GALNTL1	14	69791485	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	262272	69791485	37558055	2112	17638										
KIAA0247	0	genome.wustl.edu	37	chr14	70125403	70125403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccgctagtgatcctttgcAccctgcttggagacggactt	10	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	70125403	70125403	A	C	SNP	KIAA0247	ENST00000342745	human	ensembl	69_37n	1	known	missense	c.94	p.T32P	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	KIAA0247	HGNC	ENSG00000100647	151	0	0	100	20	16.53	-	-	-	C	70125403	A	C	70125403	3	2	232	1	0	0	0	0	1	0	0	0	8217	159	6	5	96	5	KIAA0247	14	70125403	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	333918	70125403	37224137	2113	17639										
SLC8A3	0	genome.wustl.edu	37	chr14	70633782	70633782	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctctcctggcttcagaaccAccgtgccctctgtgaactca	7	16	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	70633782	70633782	A	C	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	missense	c.1358	p.V453G	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	306	2	0.65	219	39	15.06	-	-	-	C	70633782	A	C	70633782	3	2	232	1	0	0	0	0	1	0	0	0	14797	159	6	5	1564	5	SLC8A3	14	70633782	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	508379	70633782	36715758	2114	17640										
ADAM20	0	genome.wustl.edu	37	chr14	70990360	70990360	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttgctaaatttagttgtcAcctttctataggcatgcatt	7	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	70990360	70990360	A	C	SNP	ADAM20	ENST00000256389	human	ensembl	69_37n	-1	known	missense	c.1265	p.V422G	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	333	1	0.3	207	31	13.03	-	-	-	C	70990360	A	C	70990360	3	2	232	1	0	0	0	0	1	0	0	0	242	159	6	5	1069	5	ADAM20	14	70990360	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	356578	70990360	36359180	2115	17641										
ADAM20	0	genome.wustl.edu	37	chr14	70991525	70991525	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagagcagaagagaacaaggTgtgaggcactgctggtctgg	16	6	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	70991525	70991525	T	G	SNP	ADAM20	ENST00000256389	human	ensembl	69_37n	-1	known	missense	c.100	p.T34P	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	312	1	0.32	188	27	12.56	-	-	-	G	70991525	T	G	70991525	3	3	232	1	0	0	0	0	1	0	0	0	242	1696	59	5	2234	5	ADAM20	14	70991525	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1165	70991525	36358015	2116	17642										
PCNX	0	genome.wustl.edu	37	chr14	71572125	71572125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggatcaggaactggactccAcccacctgtcacatcttatc	8	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	71572125	71572125	A	C	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.6269	p.H2090P	0.998	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	61	0	0	42	20	32.26	-	-	-	C	71572125	A	C	71572125	3	2	232	1	0	0	0	0	1	0	0	0	11664	159	6	5	6399	5	PCNX	14	71572125	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	580600	71572125	35777415	2117	17643										
SIPA1L1	0	genome.wustl.edu	37	chr14	72139090	72139090	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcaaaaggctgtgaatcggTggagatgactctgcgaagaa	13	6	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	72139090	72139090	T	G	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.2855	p.V952G	0.998	superfamily_PDZ	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	163	0	0	147	18	10.84	-	-	-	G	72139090	T	G	72139090	3	3	232	1	0	0	0	0	1	0	0	0	14418	1696	59	5	2885	5	SIPA1L1	14	72139090	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	566965	72139090	35210450	2118	17644										
SIPA1L1	0	genome.wustl.edu	37	chr14	72152208	72152208	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccagcaaggggcctcattcAcctcaagtcccgtcccaggt	10	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	72152208	72152208	A	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.3234	p.S1078	0.001	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	250	2	0.79	169	27	13.78	-	-	-	C	72152208	A	C	72152208	2	2	232	1	0	0	0	0	0	0	0	1	14418	146	6	5		5	SIPA1L1	14	72152208	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13118	72152208	35197332	2119	17645										
DCAF4	0	genome.wustl.edu	37	chr14	73418546	73418546	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagactccaggctgtgccAccctgctcccagcatcactg	9	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	73418546	73418546	A	C	SNP	DCAF4	ENST00000358377	human	ensembl	69_37n	1	known	missense	c.769	p.T257P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599	233	2	0.85	172	36	17.22	-	-	-	C	73418546	A	C	73418546	3	2	232	1	0	0	0	0	1	0	0	0	4302	159	6	5	799	5	DCAF4	14	73418546	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1266338	73418546	33930994	2120	17646										
ZFYVE1	0	genome.wustl.edu	37	chr14	73437720	73437720	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccgcaggcccggcagtggTgcttggagagcttgatgctg	17	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	73437720	73437720	T	G	SNP	ZFYVE1	ENST00000553891	human	ensembl	69_37n	-1	known	missense	c.2204	p.H735P	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Growth_fac_rcpt,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861	57	0	0	57	14	19.44	-	-	-	G	73437720	T	G	73437720	3	3	232	1	0	0	0	0	1	0	0	0	17759	1696	59	5	133	5	ZFYVE1	14	73437720	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19174	73437720	33911820	2121	17647										
ZFYVE1	0	genome.wustl.edu	37	chr14	73490943	73490943	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttaattttgcaggtctggcAcctcactattgccctctgcc	8	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	73490943	73490943	A	C	SNP	ZFYVE1	ENST00000553891	human	ensembl	69_37n	-1	known	missense	c.274	p.C92G	1.000	superfamily_Growth_fac_rcpt	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Growth_fac_rcpt,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861	210	0	0	135	20	12.9	-	-	-	C	73490943	A	C	73490943	3	2	232	1	0	0	0	0	1	0	0	0	17759	159	6	5	2103	5	ZFYVE1	14	73490943	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	53223	73490943	33858597	2122	17648										
PSEN1	0	genome.wustl.edu	37	chr14	73637554	73637554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacagacggagccttggccAccctgagccattatctaatg	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	73637554	73637554	A	C	SNP	PSEN1	ENST00000324501	human	ensembl	69_37n	1	known	missense	c.137	p.H46P	0.928	prints_Pept_A22A_PS1	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS1,prints_Peptidase_A22A	-	no_errors	PSEN1	HGNC	ENSG00000080815	53	0	0	46	12	20.34	-	-	-	C	73637554	A	C	73637554	3	2	232	1	0	0	0	0	1	0	0	0	12730	159	6	5	143	5	PSEN1	14	73637554	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	146611	73637554	33711986	2123	17649										
ACOT2	0	genome.wustl.edu	37	chr14	74042138	74042138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctcatgccatggctcaggTggatgcttggaaacaactcc	12	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74042138	74042138	T	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	missense	c.1373	p.V458G	0.975	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	73	0	0	38	15	27.78	-	-	-	G	74042138	T	G	74042138	3	3	232	1	0	0	0	0	1	0	0	0	152	1696	59	5	1383	5	ACOT2	14	74042138	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	404584	74042138	33307402	2124	17650										
C14orf43	0	genome.wustl.edu	37	chr14	74203939	74203939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaaggctcagaaaactccAccccacacttggtagttgag	10	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74203939	74203939	A	C	SNP	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	missense	c.1511	p.V504G	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	42	0	0	26	11	28.21	-	-	-	C	74203939	A	C	74203939	3	2	232	1	0	0	0	0	1	0	0	0	1786	159	6	5	1666	5	C14orf43	14	74203939	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	161801	74203939	33145601	2125	17651										
C14orf43	0	genome.wustl.edu	37	chr14	74206010	74206010	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaccgggtttgggggcggTgggccctgccggaagacctg	19	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74206010	74206010	T	G	SNP	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	silent	c.702	p.P234	0.011	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	24	0	0	9	5	35.71	-	-	-	G	74206010	T	G	74206010	2	3	232	1	0	0	0	0	0	0	0	1	1786	1683	59	5		5	C14orf43	14	74206010	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2071	74206010	33143530	2126	17652										
ZNF410	0	genome.wustl.edu	37	chr14	74376084	74376084	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagcccaaggatgtggccgTtcctttgctgagtattctag	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74376084	74376084	T	G	SNP	ZNF410	ENST00000555044	human	ensembl	69_37n	1	known	silent	c.954	p.R318	0.992	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF410	HGNC	ENSG00000119725	219	2	0.9	152	19	11.11	-	-	-	G	74376084	T	G	74376084	2	3	232	1	0	0	0	0	0	0	0	1	17986	1712	60	5		5	ZNF410	14	74376084	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	170074	74376084	32973456	2127	17653										
ENTPD5	0	genome.wustl.edu	37	chr14	74438595	74438595	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatcttcaacttttaaaatAccccccttttcataatctga	1	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74438595	74438595	A	C	SNP	ENTPD5	ENST00000555829	human	ensembl	69_37n	-1	putative	missense	c.68	p.V23G	0.799	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ENTPD5	HGNC	ENSG00000187097	374	2	0.53	279	43	13.27	-	-	-	C	74438595	A	C	74438595	3	2	232	1	0	0	0	0	1	0	0	0	5179	378	14	5	254	5	ENTPD5	14	74438595	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	62511	74438595	32910945	2128	17654										
ENTPD5	0	genome.wustl.edu	37	chr14	74439685	74439685	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgaagttttcctcgtaccAccctcagcacttcggcatag	9	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74439685	74439685	A	C	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.929	p.V310G	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	365	3	0.81	266	47	14.97	-	-	-	C	74439685	A	C	74439685	3	2	232	1	0	0	0	0	1	0	0	0	5179	159	6	5	373	5	ENTPD5	14	74439685	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1090	74439685	32909855	2129	17655										
ENTPD5	0	genome.wustl.edu	37	chr14	74439721	74439721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catagcagggctcaaagcccAcctcccctgccaggcaaagg	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	74439721	74439721	A	C	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.893	p.V298G	0.426	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	323	3	0.92	228	47	17.09	-	-	-	C	74439721	A	C	74439721	3	2	232	1	0	0	0	0	1	0	0	0	5179	159	6	5	409	5	ENTPD5	14	74439721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	36	74439721	32909819	2130	17656										
KIAA0317	0	genome.wustl.edu	37	chr14	75142442	75142442	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccttcttcggtttcttcAccttctcaggggtgtggcac	9	13	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75142442	75142442	A	C	SNP	KIAA0317	ENST00000490805	human	ensembl	69_37n	-1	novel	splice_site	c.281+2	e2+2	1.000	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0317	HGNC	ENSG00000119682	352	1	0.28	250	33	11.62	-	-	-	C	75142442	A	C	75142442	5	2	232	1	0	0	0	0	0	0	1	0	8219	159	6	5	1483	5	KIAA0317	14	75142442	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	702721	75142442	32207098	2131	17657										
KIAA0317	0	genome.wustl.edu	37	chr14	75142455	75142455	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcttcaccttctcaggggTgtggcactcagagggcgagt	13	10	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75142455	75142455	T	G	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	missense	c.1027	p.T343P	1.000	NULL	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	326	0	0	233	34	12.73	-	-	-	G	75142455	T	G	75142455	3	3	232	1	0	0	0	0	1	0	0	0	8219	1696	59	5	1496	5	KIAA0317	14	75142455	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13	75142455	32207085	2132	17658										
YLPM1	0	genome.wustl.edu	37	chr14	75230898	75230898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcatctccttcccgccccTcccagggccattctaaatcc	6	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75230898	75230898	T	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.706	p.S236P	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	99	0	0	64	12	15.79	-	-	-	C	75230898	T	C	75230898	3	2	232	1	0	0	0	0	1	0	0	0	17583	1551	54	5	708	5	YLPM1	14	75230898	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	88443	75230898	32118642	2133	17659										
YLPM1	0	genome.wustl.edu	37	chr14	75247275	75247275	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcagattatacagcccccAccacatatacaggcaagtgc	7	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75247275	75247275	A	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	silent	c.1278	p.P426	0.080	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	371	0	0	256	39	13.22	-	-	-	C	75247275	A	C	75247275	2	2	232	1	0	0	0	0	0	0	0	1	17583	146	6	5		5	YLPM1	14	75247275	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	16377	75247275	32102265	2134	17660										
YLPM1	0	genome.wustl.edu	37	chr14	75248351	75248351	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctctacctacaatgcccccTccagtgttgcctccttcatt	4	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75248351	75248351	T	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	silent	c.1605	p.P535	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	474	4	0.84	373	51	11.97	-	-	-	C	75248351	T	C	75248351	2	2	232	1	0	0	0	0	0	0	0	1	17583	1538	54	5		5	YLPM1	14	75248351	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1076	75248351	32101189	2135	17661										
YLPM1	0	genome.wustl.edu	37	chr14	75248378	75248378	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcctccttcattgccaccAccagtgatgccccctgccct	6	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75248378	75248378	A	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	silent	c.1632	p.P544	0.985	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	511	2	0.39	386	61	13.65	-	-	-	C	75248378	A	C	75248378	2	2	232	1	0	0	0	0	0	0	0	1	17583	146	6	5		5	YLPM1	14	75248378	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27	75248378	32101162	2136	17662										
YLPM1	0	genome.wustl.edu	37	chr14	75265528	75265528	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaccagaaccaggagatggTggggaaaaaatgtatccata	12	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75265528	75265528	T	G	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	silent	c.3528	p.G1176	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	121	0	0	104	27	20.61	-	-	-	G	75265528	T	G	75265528	2	3	232	1	0	0	0	0	0	0	0	1	17583	1683	59	5		5	YLPM1	14	75265528	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	17150	75265528	32084012	2137	17663										
EIF2B2	0	genome.wustl.edu	37	chr14	75473393	75473393	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accccactcatcgtctgtgcAcctatgttcaaactttctcc	4	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75473393	75473393	A	C	SNP	EIF2B2	ENST00000266126	human	ensembl	69_37n	1	known	silent	c.807	p.A269	0.079	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718	217	0	0	232	31	11.74	-	-	-	C	75473393	A	C	75473393	2	2	232	1	0	0	0	0	0	0	0	1	5036	146	6	5		5	EIF2B2	14	75473393	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	207865	75473393	31876147	2138	17664										
MLH3	0	genome.wustl.edu	37	chr14	75489583	75489583	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcccttggatgcctccggTggtctggagtagctaatgca	13	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	75489583	75489583	T	G	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.4024	p.T1342P	1.000	pfam_MutL_C,smart_MutL_C	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	224	0	0	221	25	10.08	-	-	-	G	75489583	T	G	75489583	3	3	232	1	0	0	0	0	1	0	0	0	9689	1696	59	5	349	5	MLH3	14	75489583	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	16190	75489583	31859957	2139	17665										
FLVCR2	0	genome.wustl.edu	37	chr14	76088463	76088463	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggtccctcctgttttggtAcccaacattgaagaccggga	10	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	76088463	76088463	A	C	SNP	FLVCR2	ENST00000238667	human	ensembl	69_37n	1	known	silent	c.711	p.V237	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Trimer_LpxA-like,pfscan_MFS_dom	-	no_errors	FLVCR2	HGNC	ENSG00000119686	284	0	0	194	27	12.22	-	-	-	C	76088463	A	C	76088463	2	2	232	1	0	0	0	0	0	0	0	1	5992	378	14	5		5	FLVCR2	14	76088463	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	598880	76088463	31261077	2140	17666										
TTLL5	0	genome.wustl.edu	37	chr14	76201591	76201591	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caactcggccaatttatcccAcctttgagtcttccaggcga	7	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	76201591	76201591	A	C	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.1240	p.T414P	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	275	1	0.36	154	27	14.92	-	-	-	C	76201591	A	C	76201591	3	2	232	1	0	0	0	0	1	0	0	0	16827	159	6	5	1294	5	TTLL5	14	76201591	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	113128	76201591	31147949	2141	17667										
KIAA1737	0	genome.wustl.edu	37	chr14	77579857	77579857	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctcttattccttcatccAcctgtaccatctcctgtcag	4	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	77579857	77579857	A	C	SNP	KIAA1737	ENST00000361786	human	ensembl	69_37n	1	known	silent	c.396	p.P132	0.524	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894	98	0	0	58	10	14.71	-	-	-	C	77579857	A	C	77579857	2	2	232	1	0	0	0	0	0	0	0	1	8307	146	6	5		5	KIAA1737	14	77579857	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1378266	77579857	29769683	2142	17668										
TMED8	0	genome.wustl.edu	37	chr14	77809778	77809778	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttgcttttgaattccttcAccttggcaaaggtccagatg	9	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	77809778	77809778	A	C	SNP	TMED8	ENST00000216468	human	ensembl	69_37n	-1	known	missense	c.503	p.V168G	1.000	pfscan_GOLD	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580	149	0	0	138	25	15.24	-	-	-	C	77809778	A	C	77809778	3	2	232	1	0	0	0	0	1	0	0	0	16106	159	6	5	481	5	TMED8	14	77809778	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	229921	77809778	29539762	2143	17669										
SPTLC2	0	genome.wustl.edu	37	chr14	78045343	78045343	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgtctctccatgatgtccAccctggctccaggcacacta	7	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	78045343	78045343	A	C	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.437	p.V146G	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	160	0	0	99	31	23.85	-	-	-	C	78045343	A	C	78045343	3	2	232	1	0	0	0	0	1	0	0	0	15215	159	6	5	1291	5	SPTLC2	14	78045343	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	235565	78045343	29304197	2144	17670										
SNW1	0	genome.wustl.edu	37	chr14	78184742	78184742	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attctggcttctaggtcatcAccatacatgtccttgtccag	7	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	78184742	78184742	A	C	SNP	SNW1	ENST00000261531	human	ensembl	69_37n	-1	known	silent	c.1380	p.G460	0.905	NULL	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603	323	0	0	181	25	12.08	-	-	-	C	78184742	A	C	78184742	2	2	232	1	0	0	0	0	0	0	0	1	14968	146	6	5		5	SNW1	14	78184742	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	139399	78184742	29164798	2145	17671										
SNW1	0	genome.wustl.edu	37	chr14	78184850	78184850	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttataaatttcatcttctccAcctgcaaatccactgtccat	2	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	78184850	78184850	A	C	SNP	SNW1	ENST00000261531	human	ensembl	69_37n	-1	known	silent	c.1272	p.G424	0.844	NULL	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603	214	2	0.93	100	28	21.88	-	-	-	C	78184850	A	C	78184850	2	2	232	1	0	0	0	0	0	0	0	1	14968	146	6	5		5	SNW1	14	78184850	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	108	78184850	29164690	2146	17672										
ADCK1	0	genome.wustl.edu	37	chr14	78390810	78390810	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctctttcagatctcacgccAcctgggcaagatgtatagtg	9	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	78390810	78390810	A	C	SNP	ADCK1	ENST00000238561	human	ensembl	69_37n	1	known	missense	c.869	p.H290P	0.893	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK1	HGNC	ENSG00000063761	73	0	0	31	11	26.19	-	-	-	C	78390810	A	C	78390810	3	2	232	1	0	0	0	0	1	0	0	0	288	159	6	5	895	5	ADCK1	14	78390810	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	205960	78390810	28958730	2147	17673										
NRXN3	0	genome.wustl.edu	37	chr14	80164019	80164019	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggcgcaaatagccattggTggaaaggacaaaggacgcct	13	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	80164019	80164019	T	G	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	silent	c.3720	p.G1240	0.662	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	189	0	0	90	15	14.15	-	-	-	G	80164019	T	G	80164019	2	3	232	1	0	0	0	0	0	0	0	1	10740	1683	59	5		5	NRXN3	14	80164019	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1773209	80164019	27185521	2148	17674										
TSHR	0	genome.wustl.edu	37	chr14	81609799	81609799	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatttctgcatggggatgtAcctgctcctcatcgcctctg	11	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	81609799	81609799	A	C	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.1397	p.Y466S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	230	0	0	160	27	14.29	-	-	-	C	81609799	A	C	81609799	3	2	232	1	0	0	0	0	1	0	0	0	16718	391	14	5	1572	5	TSHR	14	81609799	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1445780	81609799	25739741	2149	17675										
FLRT2	0	genome.wustl.edu	37	chr14	86089115	86089115	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagagaaagagtgaccccAcctatttctgaacggatcca	10	11	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	86089115	86089115	A	C	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	silent	c.1257	p.P419	0.897	superfamily_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	180	1	0.55	86	24	21.43	-	-	-	C	86089115	A	C	86089115	2	2	232	1	0	0	0	0	0	0	0	1	5985	146	6	5		5	FLRT2	14	86089115	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4479316	86089115	21260425	2150	17676										
GALC	0	genome.wustl.edu	37	chr14	88407818	88407818	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacttctaatcaaaataccAcctttatttactcttcctgc	2	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	88407818	88407818	A	C	SNP	GALC	ENST00000261304	human	ensembl	69_37n	-1	known	silent	c.1755	p.G585	0.970	pfam_Glyco_hydro_59,prints_Glyco_hydro_59	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983	486	0	0	378	50	11.68	-	-	-	C	88407818	A	C	88407818	2	2	232	1	0	0	0	0	0	0	0	1	6251	146	6	5		5	GALC	14	88407818	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2318703	88407818	18941722	2151	17677										
SPATA7	0	genome.wustl.edu	37	chr14	88892835	88892835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagcacattcccaaattcccAccggtttcagttagtcattt	5	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	88892835	88892835	A	C	SNP	SPATA7	ENST00000393545	human	ensembl	69_37n	1	known	missense	c.632	p.H211P	0.010	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317	157	0	0	90	18	16.67	-	-	-	C	88892835	A	C	88892835	3	2	232	1	0	0	0	0	1	0	0	0	15105	159	6	5	654	5	SPATA7	14	88892835	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	485017	88892835	18456705	2152	17678										
TTC8	0	genome.wustl.edu	37	chr14	89319366	89319366	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attctcagtacaaggactggTggtggaaagtacagattgga	13	5	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	89319366	89319366	T	G	SNP	TTC8	ENST00000338104	human	ensembl	69_37n	1	known	missense	c.724	p.W242G	1.000	smart_TPR_repeat	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC8	HGNC	ENSG00000165533	163	0	0	101	21	17.21	-	-	-	G	89319366	T	G	89319366	3	3	232	1	0	0	0	0	1	0	0	0	16811	1696	59	5	706	5	TTC8	14	89319366	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	426531	89319366	18030174	2153	17679										
TDP1	0	genome.wustl.edu	37	chr14	90509477	90509477	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacgcatgggaacatgtgggTgccctcctgagaatcttgag	13	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	90509477	90509477	T	G	SNP	TDP1	ENST00000335725	human	ensembl	69_37n	1	known	missense	c.1817	p.V606G	1.000	NULL	pfam_Tyr-DNA_phospho	-	no_errors	TDP1	HGNC	ENSG00000042088	47	0	0	47	9	16.07	-	-	-	G	90509477	T	G	90509477	3	3	232	1	0	0	0	0	1	0	0	0	15823	1696	59	5	1875	5	TDP1	14	90509477	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1190111	90509477	16840063	2154	17680										
TC2N	0	genome.wustl.edu	37	chr14	92251690	92251690	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcccgagctaaacattcccAccttcacgaaaaaacctaaa	3	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	92251690	92251690	A	C	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.1178	p.V393G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	377	0	0	258	32	10.96	-	-	-	C	92251690	A	C	92251690	3	2	232	1	0	0	0	0	1	0	0	0	15760	159	6	5	302	5	TC2N	14	92251690	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1742213	92251690	15097850	2155	17681										
CPSF2	0	genome.wustl.edu	37	chr14	92625617	92625617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctactttggaacccttgccAcctcatgaggtaaaaaaagc	7	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	92625617	92625617	A	C	SNP	CPSF2	ENST00000555244	human	ensembl	69_37n	1	novel	missense	c.662	p.H221P	0.004	NULL	pfam_RMMBL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPSF2	HGNC	ENSG00000165934	160	0	0	113	16	12.31	-	-	-	C	92625617	A	C	92625617	3	2	232	1	0	0	0	0	1	0	0	0	3855	146	6	5	2158	5	CPSF2	14	92625617	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	373927	92625617	14723923	2156	17682										
SERPINA11	0	genome.wustl.edu	37	chr14	94914955	94914955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaagcaaaattggtaatggTgggtgtgattctgtggtagg	15	3	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	94914955	94914955	T	G	SNP	SERPINA11	ENST00000334708	human	ensembl	69_37n	-1	known	missense	c.157	p.T53P	0.891	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910	262	2	0.75	235	29	10.86	-	-	-	G	94914955	T	G	94914955	3	3	232	1	0	0	0	0	1	0	0	0	14176	1696	59	5	1127	5	SERPINA11	14	94914955	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2289338	94914955	12434585	2157	17683										
SERPINA9	0	genome.wustl.edu	37	chr14	94942557	94942557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggttgtagctctctcctcActttaatctctcctctccct	4	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	94942557	94942557	A	C	SNP	SERPINA9	ENST00000546329	human	ensembl	69_37n	-1	known	missense	c.35	p.V12G	0.149	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054	272	1	0.37	197	36	15.38	-	-	-	C	94942557	A	C	94942557	3	2	232	1	0	0	0	0	1	0	0	0	14183	174	6	5		5	SERPINA9	14	94942557	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27602	94942557	12406983	2158	17684										
SERPINA12	0	genome.wustl.edu	37	chr14	94956064	94956064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcttcttcaggtcgaaggTgcccgtcatgtggagtctgg	14	9	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	94956064	94956064	T	G	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	missense	c.946	p.T316P	0.058	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	75	0	0	83	15	15.31	-	-	-	G	94956064	T	G	94956064	3	3	232	1	0	0	0	0	1	0	0	0	14177	1696	59	5	306	5	SERPINA12	14	94956064	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13507	94956064	12393476	2159	17685										
BDKRB2	0	genome.wustl.edu	37	chr14	96707011	96707011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgcccttctgggccatcAccatctccaacaacttcgac	7	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	96707011	96707011	A	C	SNP	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	missense	c.346	p.T116P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Brdyknn_rcpt,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	87	0	0	37	9	18.37	-	-	-	C	96707011	A	C	96707011	3	2	232	1	0	0	0	0	1	0	0	0	1397	159	6	5	352	5	BDKRB2	14	96707011	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1750947	96707011	10642529	2160	17686										
ATG2B	0	genome.wustl.edu	37	chr14	96800038	96800038	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcttaccacggctagaaggTgtacgagctgtttctgtctc	11	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	96800038	96800038	T	G	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	silent	c.1194	p.T398	0.988	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	122	0	0	63	16	20.25	-	-	-	G	96800038	T	G	96800038	2	3	232	1	0	0	0	0	0	0	0	1	1098	1683	59	5		5	ATG2B	14	96800038	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	93027	96800038	10549502	2161	17687										
C14orf177	0	genome.wustl.edu	37	chr14	99182639	99182639	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatcagtgagccaacttggTgaagggaaatgcccaagttc	11	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	99182639	99182639	T	G	SNP	C14orf177	ENST00000325812	human	ensembl	69_37n	1	known	silent	c.111	p.G37	0.000	NULL	NULL	-	no_errors	C14orf177	HGNC	ENSG00000176605	41	0	0	36	6	13.95	-	-	-	G	99182639	T	G	99182639	2	3	232	1	0	0	0	0	0	0	0	1	1772	1683	59	5		5	C14orf177	14	99182639	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2382601	99182639	8166901	2162	17688										
CCNK	0	genome.wustl.edu	37	chr14	99973477	99973477	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgttgcctccagcccacccAcctccaggtaagcatctgct	7	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	99973477	99973477	A	C	SNP	CCNK	ENST00000389879	human	ensembl	69_37n	1	known	silent	c.1110	p.P370	0.996	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNK	HGNC	ENSG00000090061	148	0	0	101	20	16.39	-	-	-	C	99973477	A	C	99973477	2	2	232	1	0	0	0	0	0	0	0	1	2959	146	6	5		5	CCNK	14	99973477	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	790838	99973477	7376063	2163	17689										
DYNC1H1	0	genome.wustl.edu	37	chr14	102483426	102483426	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtgtcttccctccaaaggTggtgggtctcaacttctcca	9	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	102483426	102483426	T	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.7850	p.V2617G	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	129	1	0.76	77	26	25	-	-	-	G	102483426	T	G	102483426	3	3	232	1	0	0	0	0	1	0	0	0	4876	1710	59	5	8004	5	DYNC1H1	14	102483426	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2509949	102483426	4866114	2164	17690										
DYNC1H1	0	genome.wustl.edu	37	chr14	102496051	102496051	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaagagacagtcgaccaggTgcgtcacaggcacaaattcc	10	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	102496051	102496051	T	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	splice_site	c.9642+2	e49+2	1.000	-	-	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	53	0	0	63	13	16.88	-	-	-	G	102496051	T	G	102496051	5	3	232	1	0	0	0	0	0	0	1	0	4876	1710	59	5	9838	5	DYNC1H1	14	102496051	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12625	102496051	4853489	2165	17691										
DYNC1H1	0	genome.wustl.edu	37	chr14	102498773	102498773	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcgggagaacttcatccccAccatcgtcaacttctctgca	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	102498773	102498773	A	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.10048	p.T3350P	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	120	0	0	87	26	22.81	-	-	-	C	102498773	A	C	102498773	3	2	232	1	0	0	0	0	1	0	0	0	4876	159	6	5	10254	5	DYNC1H1	14	102498773	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2722	102498773	4850767	2166	17692										
AHNAK2	0	genome.wustl.edu	37	chr14	105408544	105408544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggttgggggacgtcacctccAccttggggcctttcaggtcc	14	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	105408544	105408544	A	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.13244	p.V4415G	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	66	0	0	43	18	29.51	-	-	-	C	105408544	A	C	105408544	3	2	232	1	0	0	0	0	1	0	0	0	415	159	6	5	4147	5	AHNAK2	14	105408544	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2909771	105408544	1940996	2167	17693										
AHNAK2	0	genome.wustl.edu	37	chr14	105410617	105410617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcaaactgggcatctccAccttgggcaggtgctctttg	10	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	14	105410617	105410617	A	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.11171	p.V3724G	0.370	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	76	0	0	34	12	26.09	-	-	-	C	105410617	A	C	105410617	3	2	232	1	0	0	0	0	1	0	0	0	415	159	6	5	6220	5	AHNAK2	14	105410617	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2073	105410617	1938923	2168	17694										
OR4M2	0	genome.wustl.edu	37	chr15	22369149	22369149	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccggattgcctgtgccaacAccttcccagaggagttagtg	11	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	22369149	22369149	A	C	SNP	OR4M2	ENST00000332663	human	ensembl	69_37n	1	known	missense	c.574	p.T192P	0.075	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974	1084	5	0.46	925	105	10.13	-	-	-	C	22369149	A	C	22369149	3	2	232	1	0	0	0	0	1	0	0	0	11149	159	6	5	576	5	OR4M2	15	22369149	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		22369149	80162243	2169	17695										
OR4M2	0	genome.wustl.edu	37	chr15	22369296	22369296	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataccaacagggccatgtccAcctgctattcccacattacc	5	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	22369296	22369296	A	C	SNP	OR4M2	ENST00000332663	human	ensembl	69_37n	1	known	missense	c.721	p.T241P	0.990	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974	705	1	0.14	561	88	13.56	-	-	-	C	22369296	A	C	22369296	3	2	232	1	0	0	0	0	1	0	0	0	11149	159	6	5	723	5	OR4M2	15	22369296	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	147	22369296	80162096	2170	17696										
MKRN3	0	genome.wustl.edu	37	chr15	23811878	23811878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtgtggcatctgcatggagGttgtctatgagaaggccaac	14	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	23811878	23811878	G	T	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.949	p.V317F	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	52	0	0	61	19	23.75	-	-	-	T	23811878	G	T	23811878	3	4	232	1	0	0	0	0	1	0	0	0	9679	1261	44	4	951	4	MKRN3	15	23811878	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	1442582	23811878	78719514	2171	17697										
ATP10A	0	genome.wustl.edu	37	chr15	25924744	25924744	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccggtgctggcagctctcAccttggactcctcaggacac	11	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	25924744	25924744	A	C	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.4244	p.V1415G	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	36	0	0	28	5	15.15	-	-	-	C	25924744	A	C	25924744	3	2	232	1	0	0	0	0	1	0	0	0	1120	159	6	5	259	5	ATP10A	15	25924744	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2112866	25924744	76606648	2172	17698										
RYR3	0	genome.wustl.edu	37	chr15	33928600	33928600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcgttggcatcaaggaagTgggtattttgggcgtacctg	15	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	33928600	33928600	T	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.3405	p.S1135R	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	317	1	0.31	218	27	10.89	-	-	-	G	33928600	T	G	33928600	3	3	232	1	0	0	0	0	1	0	0	0	13856	1693	59	5	3511	5	RYR3	15	33928600	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8003856	33928600	68602792	2173	17699										
RYR3	0	genome.wustl.edu	37	chr15	33941337	33941337	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgtctgggtcggatgggTgactccagactatcacttgt	13	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	33941337	33941337	T	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.4043	p.V1348G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	109	0	0	69	22	24.18	-	-	-	G	33941337	T	G	33941337	3	3	232	1	0	0	0	0	1	0	0	0	13856	1696	59	5	4165	5	RYR3	15	33941337	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	12737	33941337	68590055	2174	17700										
RYR3	0	genome.wustl.edu	37	chr15	34147040	34147040	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taacttcttctttgctgctcAcctattggacatcgcaatgg	7	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	34147040	34147040	A	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.13934	p.H4645P	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	263	1	0.38	212	34	13.71	-	-	-	C	34147040	A	C	34147040	3	2	232	1	0	0	0	0	1	0	0	0	13856	159	6	5	14324	5	RYR3	15	34147040	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	205703	34147040	68384352	2175	17701										
SLC12A6	0	genome.wustl.edu	37	chr15	34531306	34531306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctctctcagcttggcggccAccaccagctggcagaatcct	9	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	34531306	34531306	A	C	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.2465	p.V822G	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	236	2	0.84	250	54	17.65	-	-	-	C	34531306	A	C	34531306	3	2	232	1	0	0	0	0	1	0	0	0	14476	159	6	5	988	5	SLC12A6	15	34531306	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	384266	34531306	68000086	2176	17702										
LPCAT4	0	genome.wustl.edu	37	chr15	34652394	34652394	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggccacatctcggaagtccAccaaacccttggtatcctgg	10	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	34652394	34652394	A	C	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	missense	c.1160	p.V387G	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	160	0	0	168	24	12.5	-	-	-	C	34652394	A	C	34652394	3	2	232	1	0	0	0	0	1	0	0	0	8979	159	6	5	426	5	LPCAT4	15	34652394	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	121088	34652394	67878998	2177	17703										
MEIS2	0	genome.wustl.edu	37	chr15	37184468	37184468	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgacatagtcattccagggTgggtagggggtcctccgtgc	15	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	37184468	37184468	T	G	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.1340	p.H447P	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	299	1	0.33	232	37	13.65	-	-	-	G	37184468	T	G	37184468	3	3	232	1	0	0	0	0	1	0	0	0	9539	1696	59	5	97	5	MEIS2	15	37184468	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2532074	37184468	65346924	2178	17704										
C15orf54	0	genome.wustl.edu	37	chr15	39544369	39544369	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcattactggcaagcacggTggcaggagaccccagagggc	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	39544369	39544369	T	G	SNP	C15orf54	ENST00000318578	human	ensembl	69_37n	1	known	silent	c.33	p.G11	0.373	NULL	NULL	-	no_errors	C15orf54	HGNC	ENSG00000175746	309	1	0.32	303	45	12.89	-	-	-	G	39544369	T	G	39544369	2	3	232	1	0	0	0	0	0	0	0	1	1814	1683	59	5		5	C15orf54	15	39544369	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2359901	39544369	62987023	2179	17705										
GPR176	0	genome.wustl.edu	37	chr15	40093343	40093343	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaatccttgctaggaatccAcctttggaaaaatgctcact	6	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	40093343	40093343	A	C	SNP	GPR176	ENST00000561100	human	ensembl	69_37n	-1	known	missense	c.1538	p.V513G	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR176	HGNC	ENSG00000166073	117	1	0.85	86	10	10.42	-	-	-	C	40093343	A	C	40093343	3	2	232	1	0	0	0	0	1	0	0	0	6723	159	6	5	13	5	GPR176	15	40093343	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	548974	40093343	62438049	2180	17706										
BUB1B	0	genome.wustl.edu	37	chr15	40462774	40462774	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcagaactatcctcaaggTgggaaggagagtaatatgtc	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	40462774	40462774	T	G	SNP	BUB1B	ENST00000559414	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.024	-	-	-	no_errors	BUB1B	HGNC	ENSG00000156970	157	0	0	132	24	15.38	-	-	-	G	40462774	T	G	40462774	5	3	232	1	0	0	0	0	0	0	1	0	1580	1683	59	5	290	5	BUB1B	15	40462774	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	369431	40462774	62068618	2181	17707										
RPAP1	0	genome.wustl.edu	37	chr15	41827724	41827724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcaccctctggtgggcccAcgttgggcacaacttcccca	10	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	41827724	41827724	A	C	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	missense	c.527	p.V176G	0.007	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	109	1	0.9	153	18	10.53	-	-	-	C	41827724	A	C	41827724	3	2	232	1	0	0	0	0	1	0	0	0	13627	159	6	5	3738	5	RPAP1	15	41827724	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1364950	41827724	60703668	2182	17708										
MGA	0	genome.wustl.edu	37	chr15	41961516	41961516	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataagtggaatggtcgttggTgggaacctagtgggaaggct	17	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	41961516	41961516	T	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.424	p.W142G	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	527	0	0	411	47	10.24	-	-	-	G	41961516	T	G	41961516	3	3	232	1	0	0	0	0	1	0	0	0	9611	1696	59	5	426	5	MGA	15	41961516	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	133792	41961516	60569876	2183	17709										
MGA	0	genome.wustl.edu	37	chr15	41961559	41961559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctcatgttttggggagggTtttcattcatccagaatctc	9	9	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	41961559	41961559	T	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.467	p.V156G	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	502	5	0.99	417	56	11.84	-	-	-	G	41961559	T	G	41961559	3	3	232	1	0	0	0	0	1	0	0	0	9611	1725	60	5	469	5	MGA	15	41961559	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	43	41961559	60569833	2184	17710										
MGA	0	genome.wustl.edu	37	chr15	42035244	42035244	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgttgcttccactgcttccAcctccttagtcgtggtgact	8	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	42035244	42035244	A	C	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.5086	p.T1696P	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	91	0	0	71	15	17.44	-	-	-	C	42035244	A	C	42035244	3	2	232	1	0	0	0	0	1	0	0	0	9611	159	6	5	5140	5	MGA	15	42035244	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	73685	42035244	60496148	2185	17711										
PLA2G4F	0	genome.wustl.edu	37	chr15	42434401	42434401	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagctgtttgtcgctccacAcctgtgggtgggggaagcag	15	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	42434401	42434401	A	C	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	silent	c.2337	p.G779	0.997	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	54	0	0	36	10	21.74	-	-	-	C	42434401	A	C	42434401	2	2	232	1	0	0	0	0	0	0	0	1	12080	173	6	5		5	PLA2G4F	15	42434401	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	399157	42434401	60096991	2186	17712										
GANC	0	genome.wustl.edu	37	chr15	42631936	42631936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggtaccaggctggagcctAccagcccttcttccgtggcc	11	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	42631936	42631936	A	C	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	missense	c.1913	p.Y638S	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	183	1	0.54	118	23	16.2	-	-	-	C	42631936	A	C	42631936	3	2	232	1	0	0	0	0	1	0	0	0	6284	391	14	5	1979	5	GANC	15	42631936	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	197535	42631936	59899456	2187	17713										
GANC	0	genome.wustl.edu	37	chr15	42631962	42631962	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttcttccgtggccatgccAccatgaacaccaagcgacga	8	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	42631962	42631962	A	C	SNP	GANC	ENST00000318010	human	ensembl	69_37n	1	known	missense	c.1939	p.T647P	0.125	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	174	0	0	125	17	11.89	-	-	-	C	42631962	A	C	42631962	3	2	232	1	0	0	0	0	1	0	0	0	6284	159	6	5	2005	5	GANC	15	42631962	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26	42631962	59899430	2188	17714										
TTBK2	0	genome.wustl.edu	37	chr15	43164939	43164939	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taaatttctccaaagcccccAcccccaatctttctcaactg	2	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	43164939	43164939	A	C	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	352	2	0.56	218	40	15.5	-	-	-	C	43164939	A	C	43164939	2	2	232	1	0	0	0	0	0	0	0	1	16774	146	6	5		5	TTBK2	15	43164939	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	532977	43164939	59366453	2189	17715										
TGM5	0	genome.wustl.edu	37	chr15	43525842	43525842	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagggggtttgaaaatatcAcctgtatggagagtggctgg	16	4	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	43525842	43525842	A	C	SNP	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	missense	c.1919	p.V640G	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	79	0	0	104	20	16	-	-	-	C	43525842	A	C	43525842	3	2	232	1	0	0	0	0	1	0	0	0	15928	159	6	5	251	5	TGM5	15	43525842	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	360903	43525842	59005550	2190	17716										
TGM7	0	genome.wustl.edu	37	chr15	43574194	43574194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatgacttcatcggcgttcAcctcggcatacacaaaaggg	9	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	43574194	43574194	A	C	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	missense	c.1199	p.V400G	1.000	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	41	0	0	38	8	17.39	-	-	-	C	43574194	A	C	43574194	3	2	232	1	0	0	0	0	1	0	0	0	15930	159	6	5	953	5	TGM7	15	43574194	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	48352	43574194	58957198	2191	17717										
TP53BP1	0	genome.wustl.edu	37	chr15	43708608	43708608	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actccttcctatgtcctttcAccactcctggggggtggaaa	9	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	43708608	43708608	A	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.4688	p.V1563G	1.000	pfam_53-BP1_Tudor	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	128	0	0	161	28	14.74	-	-	-	C	43708608	A	C	43708608	3	2	232	1	0	0	0	0	1	0	0	0	16479	159	6	5	1273	5	TP53BP1	15	43708608	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	134414	43708608	58822784	2192	17718										
MAP1A	0	genome.wustl.edu	37	chr15	43821329	43821329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggtgtcagtggtactcaccAccccaggcctggccatgacc	12	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	43821329	43821329	A	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.7658	p.H2553P	0.971	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	46	0	0	31	13	29.55	-	-	-	C	43821329	A	C	43821329	3	2	232	1	0	0	0	0	1	0	0	0	9298	159	6	5	7660	5	MAP1A	15	43821329	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	112721	43821329	58710063	2193	17719										
SPG11	0	genome.wustl.edu	37	chr15	44865780	44865780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtaagcagctcccgtgtcAcctcttctgccacgagttca	8	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	44865780	44865780	A	C	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	missense	c.6170	p.V2057G	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	54	0	0	45	13	22.03	-	-	-	C	44865780	A	C	44865780	3	2	232	1	0	0	0	0	1	0	0	0	15132	159	6	5	1197	5	SPG11	15	44865780	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1044451	44865780	57665612	2194	17720										
TRIM69	0	genome.wustl.edu	37	chr15	45047165	45047165	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgaatgattcaatcacccAcctaccctctaaagtggtga	6	11	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	45047165	45047165	A	C	SNP	TRIM69	ENST00000329464	human	ensembl	69_37n	1	known	missense	c.74	p.H25P	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM69	HGNC	ENSG00000185880	194	0	0	171	35	16.99	-	-	-	C	45047165	A	C	45047165	3	2	232	1	0	0	0	0	1	0	0	0	16638	159	6	5	80	5	TRIM69	15	45047165	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	181385	45047165	57484227	2195	17721										
TRIM69	0	genome.wustl.edu	37	chr15	45059866	45059866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaccatgactcacatttacAccttcagtaacactttcatg	3	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	45059866	45059866	A	C	SNP	TRIM69	ENST00000329464	human	ensembl	69_37n	1	known	missense	c.1399	p.T467P	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM69	HGNC	ENSG00000185880	274	2	0.72	266	44	14.15	-	-	-	C	45059866	A	C	45059866	3	2	232	1	0	0	0	0	1	0	0	0	16638	159	6	5	1425	5	TRIM69	15	45059866	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12701	45059866	57471526	2196	17722										
DUOX1	0	genome.wustl.edu	37	chr15	45448102	45448102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcttctggctgacccaccAcctctacatcctgctctatg	8	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	45448102	45448102	A	C	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3677	p.H1226P	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	66	0	0	75	26	25.74	-	-	-	C	45448102	A	C	45448102	3	2	232	1	0	0	0	0	1	0	0	0	4835	159	6	5	3783	5	DUOX1	15	45448102	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	388236	45448102	57083290	2197	17723										
FBN1	0	genome.wustl.edu	37	chr15	48707867	48707867	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcctccactgaactgttcAtactggaagccggcgggaca	10	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	48707867	48707867	A	C	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	nonsense	c.7917	p.Y2639*	0.399	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	134	0	0	102	29	22.14	-	-	-	C	48707867	A	C	48707867	4	2	232	1	0	0	0	0	0	1	0	0	5748	224	8	5	710	5	FBN1	15	48707867	Nonsense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3259765	48707867	53823525	2198	17724										
CEP152	0	genome.wustl.edu	37	chr15	49081140	49081140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcagaatgatgaaggtccAccagctgctgcttcaagctt	9	10	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	49081140	49081140	A	C	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.1031	p.V344G	0.996	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	278	2	0.71	220	44	16.6	-	-	-	C	49081140	A	C	49081140	3	2	232	1	0	0	0	0	1	0	0	0	3277	159	6	5	4005	5	CEP152	15	49081140	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	373273	49081140	53450252	2199	17725										
SECISBP2L	0	genome.wustl.edu	37	chr15	49325254	49325254	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgagtagctacatttttcAccagcggccttttgcttttt	7	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	49325254	49325254	A	C	SNP	SECISBP2L	ENST00000559471	human	ensembl	69_37n	-1	known	missense	c.572	p.V191G	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593	124	0	0	111	33	22.76	-	-	-	C	49325254	A	C	49325254	3	2	232	1	0	0	0	0	1	0	0	0	14095	159	6	5	2654	5	SECISBP2L	15	49325254	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	244114	49325254	53206138	2200	17726										
ATP8B4	0	genome.wustl.edu	37	chr15	50189596	50189596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacattcggaaataagaccAccttccatgaacaaggagaa	8	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	50189596	50189596	A	C	SNP	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	missense	c.2590	p.W864G	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	420	2	0.47	284	51	15.18	-	-	-	C	50189596	A	C	50189596	3	2	232	1	0	0	0	0	1	0	0	0	1201	159	6	5	1012	5	ATP8B4	15	50189596	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	864342	50189596	52341796	2201	17727										
DMXL2	0	genome.wustl.edu	37	chr15	51837848	51837848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctggcaatgctggaagTggtagtctcacaaatctgct	12	9	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	51837848	51837848	T	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.862	p.T288P	0.979	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	333	1	0.3	253	31	10.92	-	-	-	G	51837848	T	G	51837848	3	3	232	1	0	0	0	0	1	0	0	0	4631	1696	59	5	8395	5	DMXL2	15	51837848	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1648252	51837848	50693544	2202	17728										
PYGO1	0	genome.wustl.edu	37	chr15	55838498	55838498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatggccatgacggtttgggTgaagagaggatttattgctt	14	4	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	55838498	55838498	T	G	SNP	PYGO1	ENST00000302000	human	ensembl	69_37n	-1	known	missense	c.983	p.H328P	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016	260	1	0.38	291	51	14.87	-	-	-	G	55838498	T	G	55838498	3	3	232	1	0	0	0	0	1	0	0	0	12946	1696	59	5	280	5	PYGO1	15	55838498	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4000650	55838498	46692894	2203	17729										
TCF12	0	genome.wustl.edu	37	chr15	57523418	57523418	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttatccatctcctaagccAccaaccagtatgttcgctag	6	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	57523418	57523418	A	C	SNP	TCF12	ENST00000537840	human	ensembl	69_37n	1	novel	missense	c.80	p.H27P	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	187	0	0	176	22	11.11	-	-	-	C	57523418	A	C	57523418	3	2	232	1	0	0	0	0	1	0	0	0	15782	146	6	5	751	5	TCF12	15	57523418	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1684920	57523418	45007974	2204	17730										
ADAM10	0	genome.wustl.edu	37	chr15	58913777	58913777	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagccacaatcacattcttcAccttgttctaccattccatt	2	14	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	58913777	58913777	A	C	SNP	ADAM10	ENST00000260408	human	ensembl	69_37n	-1	known	silent	c.1404	p.G468	0.954	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM10	HGNC	ENSG00000137845	273	1	0.36	231	35	13.16	-	-	-	C	58913777	A	C	58913777	2	2	232	1	0	0	0	0	0	0	0	1	234	146	6	5		5	ADAM10	15	58913777	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1390359	58913777	43617615	2205	17731										
SLTM	0	genome.wustl.edu	37	chr15	59175919	59175919	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgagagggtggaccatgccActctttccttggtccgcttg	12	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	59175919	59175919	A	C	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.2902	p.W968G	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	161	1	0.61	131	24	15.29	-	-	-	C	59175919	A	C	59175919	3	2	232	1	0	0	0	0	1	0	0	0	14843	159	6	5	210	5	SLTM	15	59175919	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	262142	59175919	43355473	2206	17732										
RNF111	0	genome.wustl.edu	37	chr15	59350671	59350671	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgatactgcttcagctgtcAccagtagccaaccttccaca	6	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	59350671	59350671	A	C	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.1288	p.T430P	0.994	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	616	0	0	390	50	11.36	-	-	-	C	59350671	A	C	59350671	3	2	232	1	0	0	0	0	1	0	0	0	13511	159	6	5	1302	5	RNF111	15	59350671	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	174752	59350671	43180721	2207	17733										
MYO1E	0	genome.wustl.edu	37	chr15	59500992	59500992	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgatctgccccctcacccAccgcatgcatcgtggcgcac	8	19	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	59500992	59500992	A	C	SNP	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	missense	c.1418	p.V473G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	99	1	1	90	18	16.67	-	-	-	C	59500992	A	C	59500992	3	2	232	1	0	0	0	0	1	0	0	0	10144	159	6	5	1968	5	MYO1E	15	59500992	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	150321	59500992	43030400	2208	17734										
TLN2	0	genome.wustl.edu	37	chr15	63054582	63054582	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaaccccaaagacccacccAcctggtctgtactggctgga	8	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	63054582	63054582	A	C	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.4891	p.T1631P	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	415	4	0.95	354	43	10.83	-	-	-	C	63054582	A	C	63054582	3	2	232	1	0	0	0	0	1	0	0	0	16043	159	6	5	5033	5	TLN2	15	63054582	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3553590	63054582	39476810	2209	17735										
LACTB	0	genome.wustl.edu	37	chr15	63433551	63433551	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactcctataaatgggctggTggtggatttctgtctacagt	11	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	63433551	63433551	T	G	SNP	LACTB	ENST00000261893	human	ensembl	69_37n	1	known	silent	c.1191	p.G397	0.990	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	-	no_errors	LACTB	HGNC	ENSG00000103642	187	1	0.53	244	37	13.17	-	-	-	G	63433551	T	G	63433551	2	3	232	1	0	0	0	0	0	0	0	1	8651	1683	59	5		5	LACTB	15	63433551	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	378969	63433551	39097841	2210	17736										
SNX22	0	genome.wustl.edu	37	chr15	64446679	64446679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagccaaaggcggcctgtcAccctgctcctctgccaccga	9	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	64446679	64446679	A	C	SNP	SNX22	ENST00000325881	human	ensembl	69_37n	1	known	missense	c.554	p.H185P	0.006	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX22	HGNC	ENSG00000157734	123	0	0	52	14	21.21	-	-	-	C	64446679	A	C	64446679	3	2	232	1	0	0	0	0	1	0	0	0	14983	159	6	5	580	5	SNX22	15	64446679	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1013128	64446679	38084713	2211	17737										
PPIB	0	genome.wustl.edu	37	chr15	64454310	64454310	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccgaagagaccaaagatcAcccggcctacatcttcatct	6	14	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	64454310	64454310	A	C	SNP	PPIB	ENST00000300026	human	ensembl	69_37n	-1	known	missense	c.179	p.V60G	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIB	HGNC	ENSG00000166794	216	1	0.46	131	35	20.96	-	-	-	C	64454310	A	C	64454310	3	2	232	1	0	0	0	0	1	0	0	0	12396	159	6	5	487	5	PPIB	15	64454310	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7631	64454310	38077082	2212	17738										
PPIB	0	genome.wustl.edu	37	chr15	64454352	64454352	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caattcgtaggtcaaaatacAcctgaggaaagagaccattt	8	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	64454352	64454352	A	C	SNP	PPIB	ENST00000300026	human	ensembl	69_37n	-1	known	missense	c.137	p.V46G	1.000	superfamily_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIB	HGNC	ENSG00000166794	196	0	0	115	20	14.81	-	-	-	C	64454352	A	C	64454352	3	2	232	1	0	0	0	0	1	0	0	0	12396	173	6	5	529	5	PPIB	15	64454352	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42	64454352	38077040	2213	17739										
ZNF609	0	genome.wustl.edu	37	chr15	64968031	64968031	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgaccagagttaccacacccAccttctgagcactaacacgg	7	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	64968031	64968031	A	C	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	missense	c.2978	p.H993P	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	321	3	0.92	296	45	13.2	-	-	-	C	64968031	A	C	64968031	3	2	232	1	0	0	0	0	1	0	0	0	18131	159	6	5	2992	5	ZNF609	15	64968031	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	513679	64968031	37563361	2214	17740										
ANKDD1A	0	genome.wustl.edu	37	chr15	65235699	65235699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggcagcagacgccccttcAcctggctgcagagcacgcct	12	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	65235699	65235699	A	C	SNP	ANKDD1A	ENST00000380230	human	ensembl	69_37n	1	known	missense	c.986	p.H329P	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,prints_Ankyrin_rpt	-	no_errors	ANKDD1A	HGNC	ENSG00000166839	236	2	0.83	189	27	12.44	-	-	-	C	65235699	A	C	65235699	3	2	232	1	0	0	0	0	1	0	0	0	624	159	6	5	1028	5	ANKDD1A	15	65235699	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	267668	65235699	37295693	2215	17741										
CILP	0	genome.wustl.edu	37	chr15	65490842	65490842	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttcagccatggggtcttcAccaaccacttcccccagggg	10	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	65490842	65490842	A	C	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	silent	c.1782	p.G594	0.033	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	104	0	0	99	23	18.85	-	-	-	C	65490842	A	C	65490842	2	2	232	1	0	0	0	0	0	0	0	1	3458	146	6	5		5	CILP	15	65490842	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	255143	65490842	37040550	2216	17742										
NOX5	0	genome.wustl.edu	37	chr15	69331272	69331272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttgtatctgaacatccccAccattgctcgctatgagtgg	8	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	69331272	69331272	A	C	SNP	NOX5	ENST00000388866	human	ensembl	69_37n	1	known	missense	c.1447	p.T483P	0.845	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NOX5	HGNC	ENSG00000255346	276	0	0	224	33	12.84	-	-	-	C	69331272	A	C	69331272	3	2	232	1	0	0	0	0	1	0	0	0	10631	159	6	5	1514	5	NOX5	15	69331272	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3840430	69331272	33200120	2217	17743										
NOX5	0	genome.wustl.edu	37	chr15	69331302	69331302	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctatgagtggcaccccttcAccatcagcagtgctcctgag	10	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	69331302	69331302	A	C	SNP	NOX5	ENST00000388866	human	ensembl	69_37n	1	known	missense	c.1477	p.T493P	1.000	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NOX5	HGNC	ENSG00000255346	234	1	0.43	202	32	13.62	-	-	-	C	69331302	A	C	69331302	3	2	232	1	0	0	0	0	1	0	0	0	10631	159	6	5	1544	5	NOX5	15	69331302	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	30	69331302	33200090	2218	17744										
THSD4	0	genome.wustl.edu	37	chr15	71952880	71952880	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttttgcagagcattggctgTgatgactacttaggctccga	11	8	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	71952880	71952880	T	G	SNP	THSD4	ENST00000261862	human	ensembl	69_37n	1	known	missense	c.1164	p.C388W	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720	229	2	0.87	224	35	13.51	-	-	-	G	71952880	T	G	71952880	3	3	232	1	0	0	0	0	1	0	0	0	15973	1702	59	5	1190	5	THSD4	15	71952880	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2621578	71952880	30578512	2219	17745										
PARP6	0	genome.wustl.edu	37	chr15	72548915	72548915	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctgccctacacatggccAccagcagatccaccacctta	6	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	72548915	72548915	A	C	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.1016	p.V339G	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	89	0	0	89	16	15.09	-	-	-	C	72548915	A	C	72548915	3	2	232	1	0	0	0	0	1	0	0	0	11537	159	6	5	920	5	PARP6	15	72548915	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	596035	72548915	29982477	2220	17746										
PARP6	0	genome.wustl.edu	37	chr15	72559863	72559863	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaggtcagtgctaggcagcAcccctccataccactagccg	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	72559863	72559863	A	C	SNP	PARP6	ENST00000413097	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PARP6	HGNC	ENSG00000137817	45	0	0	47	21	30.88	-	-	-	C	72559863	A	C	72559863	1	2	232	0	1	0	0	0	0	0	0	0	11537	174	6	5		5	PARP6	15	72559863	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10948	72559863	29971529	2221	17747										
NEO1	0	genome.wustl.edu	37	chr15	73575388	73575388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtttctgttggcgtcatcAccatcgtggtggttgtgatt	12	7	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	73575388	73575388	A	C	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.3346	p.T1116P	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	425	3	0.7	323	44	11.92	-	-	-	C	73575388	A	C	73575388	3	2	232	1	0	0	0	0	1	0	0	0	10408	159	6	5	3436	5	NEO1	15	73575388	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1015525	73575388	28956004	2222	17748										
PML	0	genome.wustl.edu	37	chr15	74327676	74327676	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccccagcttggcctccccAccagcccgctgagcaggctg	10	21	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	74327676	74327676	A	C	SNP	PML	ENST00000268059	human	ensembl	69_37n	1	known	missense	c.1874	p.H625P	0.000	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464	111	1	0.88	117	26	18.18	-	-	-	C	74327676	A	C	74327676	3	2	232	1	0	0	0	0	1	0	0	0	12209	159	6	5	2038	5	PML	15	74327676	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	752288	74327676	28203716	2223	17749										
CYP1A2	0	genome.wustl.edu	37	chr15	75042205	75042205	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaaaggcctgaaaagtccAccagagccatggggctggcc	12	14	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	75042205	75042205	A	C	SNP	CYP1A2	ENST00000343932	human	ensembl	69_37n	1	known	silent	c.126	p.P42	0.010	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505	198	0	0	112	20	15.04	-	-	-	C	75042205	A	C	75042205	2	2	232	1	0	0	0	0	0	0	0	1	4181	146	6	5		5	CYP1A2	15	75042205	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	714529	75042205	27489187	2224	17750										
CYP1A2	0	genome.wustl.edu	37	chr15	75042264	75042264	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccctggggaagaacccgcAcctggcactgtcaaggatga	13	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	75042264	75042264	A	C	SNP	CYP1A2	ENST00000343932	human	ensembl	69_37n	1	known	missense	c.185	p.H62P	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505	149	0	0	84	25	22.94	-	-	-	C	75042264	A	C	75042264	3	2	232	1	0	0	0	0	1	0	0	0	4181	159	6	5	187	5	CYP1A2	15	75042264	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	59	75042264	27489128	2225	17751										
SIN3A	0	genome.wustl.edu	37	chr15	75705178	75705178	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactgggctgaaggctgggAaggatgttggggtggtggtt	21	3	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	75705178	75705178	A	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.682	p.S228P	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	102	0	0	138	17	10.97	-	-	-	G	75705178	A	G	75705178	3	3	232	1	0	0	0	0	1	0	0	0	14414	246	9	5	3207	5	SIN3A	15	75705178	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	662914	75705178	26826214	2226	17752										
ODF3L1	0	genome.wustl.edu	37	chr15	76019411	76019411	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctttcaggcctgaaccccAccctcgcatcctgccagtac	6	20	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	76019411	76019411	A	C	SNP	ODF3L1	ENST00000332145	human	ensembl	69_37n	1	known	missense	c.355	p.T119P	0.067	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L1	HGNC	ENSG00000182950	116	1	0.85	76	24	23.76	-	-	-	C	76019411	A	C	76019411	3	2	232	1	0	0	0	0	1	0	0	0	10904	159	6	5	369	5	ODF3L1	15	76019411	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	314233	76019411	26511981	2227	17753										
FBXO22	0	genome.wustl.edu	37	chr15	76222285	76222285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggttataattgctgtaaggTgggagccagtaattatctgc	12	5	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	76222285	76222285	T	G	SNP	FBXO22	ENST00000308275	human	ensembl	69_37n	1	known	missense	c.689	p.V230G	0.026	NULL	pfam_FIST_C_domain,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO22	HGNC	ENSG00000167196	295	0	0	203	33	13.92	-	-	-	G	76222285	T	G	76222285	3	3	232	1	0	0	0	0	1	0	0	0	5780	1696	59	5	711	5	FBXO22	15	76222285	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	202874	76222285	26309107	2228	17754										
LINGO1	0	genome.wustl.edu	37	chr15	77907410	77907410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaggtggcggacggccaggTagggcacagcggtcagattg	18	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	77907410	77907410	T	G	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.839	p.Y280S	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	48	0	0	12	11	45.83	-	-	-	G	77907410	T	G	77907410	3	3	232	1	0	0	0	0	1	0	0	0	8870	1638	57	5	1027	5	LINGO1	15	77907410	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1685125	77907410	24623982	2229	17755										
LINGO1	0	genome.wustl.edu	37	chr15	77907578	77907578	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatggcattgatgttgaggTgccggagcctcaggacgatg	17	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	77907578	77907578	T	G	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.671	p.H224P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	85	0	0	50	11	18.03	-	-	-	G	77907578	T	G	77907578	3	3	232	1	0	0	0	0	1	0	0	0	8870	1696	59	5	1195	5	LINGO1	15	77907578	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	168	77907578	24623814	2230	17756										
CHRNB4	0	genome.wustl.edu	37	chr15	78921883	78921883	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgccgcagtcggatggcaggTagaagacgaggatggccagc	17	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	78921883	78921883	T	G	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.764	p.Y255S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	153	0	0	190	26	11.98	-	-	-	G	78921883	T	G	78921883	3	3	232	1	0	0	0	0	1	0	0	0	3422	1638	57	5	740	5	CHRNB4	15	78921883	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1014305	78921883	23609509	2231	17757										
RASGRF1	0	genome.wustl.edu	37	chr15	79277491	79277491	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccacttctcgatggcgctcAccctggcgttgatgtcctca	9	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	79277491	79277491	A	C	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.3320	p.V1107G	0.996	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	49	0	0	61	12	16.44	-	-	-	C	79277491	A	C	79277491	3	2	232	1	0	0	0	0	1	0	0	0	13155	159	6	5	521	5	RASGRF1	15	79277491	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	355608	79277491	23253901	2232	17758										
KIAA1024	0	genome.wustl.edu	37	chr15	79750602	79750602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttaaaaaaaagcctcttcAccaggccatcctctaggtcc	5	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	79750602	79750602	A	C	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	missense	c.2113	p.T705P	0.001	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	191	1	0.52	182	26	12.5	-	-	-	C	79750602	A	C	79750602	3	2	232	1	0	0	0	0	1	0	0	0	8257	159	6	5	2115	5	KIAA1024	15	79750602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	473111	79750602	22780790	2233	17759										
ARNT2	0	genome.wustl.edu	37	chr15	80767444	80767444	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttatgtgtctgactccgtcAcccctgttctgaaccagccc	7	15	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	80767444	80767444	A	C	SNP	ARNT2	ENST00000303329	human	ensembl	69_37n	1	known	missense	c.502	p.T168P	1.000	pfam_PAS_fold,smart_PAS,pfscan_PAS,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379	234	0	0	212	42	16.54	-	-	-	C	80767444	A	C	80767444	3	2	232	1	0	0	0	0	1	0	0	0	970	159	6	5	520	5	ARNT2	15	80767444	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1016842	80767444	21763948	2234	17760										
MESDC2	0	genome.wustl.edu	37	chr15	81271727	81271727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagagttacatcagcacAcctgtcttgaccgaccaaaa	6	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	81271727	81271727	A	C	SNP	MESDC2	ENST00000261758	human	ensembl	69_37n	-1	known	missense	c.538	p.C180G	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899	138	0	0	128	20	13.42	-	-	-	C	81271727	A	C	81271727	3	2	232	1	0	0	0	0	1	0	0	0	9552	159	6	5	170	5	MESDC2	15	81271727	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	504283	81271727	21259665	2235	17761										
EFTUD1	0	genome.wustl.edu	37	chr15	82512144	82512144	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttaggggtcatactttccAcctgttgctcgtcacctgac	9	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	82512144	82512144	A	C	SNP	EFTUD1	ENST00000268206	human	ensembl	69_37n	-1	known	missense	c.1460	p.V487G	0.023	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598	143	0	0	142	33	18.86	-	-	-	C	82512144	A	C	82512144	3	2	232	1	0	0	0	0	1	0	0	0	4995	159	6	5	1930	5	EFTUD1	15	82512144	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1240417	82512144	20019248	2236	17762										
BNC1	0	genome.wustl.edu	37	chr15	83926490	83926490	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttccccagggacaaggctcgAcccttcacagttcccatcac	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	83926490	83926490	A	C	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2689	p.S897A	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	324	0	0	282	36	11.25	-	-	-	C	83926490	A	C	83926490	3	2	232	1	0	0	0	0	1	0	0	0	1479	275	10	5	299	5	BNC1	15	83926490	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1414346	83926490	18604902	2237	17763										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84651754	84651754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagctgatatatcagctggTggccgaattagccaaggcac	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	84651754	84651754	T	G	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.3374	p.V1125G	0.996	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	107	0	0	135	21	13.46	-	-	-	G	84651754	T	G	84651754	3	3	232	1	0	0	0	0	1	0	0	0	276	1696	59	5	3452	5	ADAMTSL3	15	84651754	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	725264	84651754	17879638	2238	17764										
ALPK3	0	genome.wustl.edu	37	chr15	85384061	85384061	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagcttaggaaaggccccAcctcaggcctctgtgcaggt	12	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	85384061	85384061	A	C	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	silent	c.2157	p.P719	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	40	0	0	31	5	13.89	-	-	-	C	85384061	A	C	85384061	2	2	232	1	0	0	0	0	0	0	0	1	546	146	6	5		5	ALPK3	15	85384061	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	732307	85384061	17147331	2239	17765										
AKAP13	0	genome.wustl.edu	37	chr15	86123572	86123572	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttaacaaatatgcttgaggTggtttcacatccacatccag	7	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	86123572	86123572	T	G	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.2273	p.V758G	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	212	0	0	160	22	12.09	-	-	-	G	86123572	T	G	86123572	3	3	232	1	0	0	0	0	1	0	0	0	449	1696	59	5	2295	5	AKAP13	15	86123572	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	739511	86123572	16407820	2240	17766										
AKAP13	0	genome.wustl.edu	37	chr15	86124248	86124248	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacttcagctaagtaattcAccgggtgcatcctctgcctt	8	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	86124248	86124248	A	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	silent	c.2949	p.S983	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	170	1	0.58	117	19	13.97	-	-	-	C	86124248	A	C	86124248	2	2	232	1	0	0	0	0	0	0	0	1	449	146	6	5		5	AKAP13	15	86124248	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	676	86124248	16407144	2241	17767										
AGBL1	0	genome.wustl.edu	37	chr15	86808029	86808029	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggacactgtccccctcccAccacccagcctatgttggaa							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	86808029	86808029	A	C	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.1489	p.T497P	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	156	0	0	105	46	30.26	-	-	-	C	86808029	A	C	86808029	3	2	232	1	0	0	0	0	1	0	0	0	375	159	6	5	1523	5	AGBL1	15	86808029	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	683781	86808029	15723363	2242	17768	194	2								
AGBL1	0	genome.wustl.edu	37	chr15	86808032	86808032	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacactgtccccctcccaccAcccagcctatgttggaacga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	86808032	86808032	A	C	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.1492	p.T498P	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	159	0	0	109	49	30.43	-	-	-	C	86808032	A	C	86808032	3	2	232	1	0	0	0	0	1	0	0	0	375	159	6	5	1526	5	AGBL1	15	86808032	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	86808032	15723360	2243	17769	194	2								
NTRK3	0	genome.wustl.edu	37	chr15	88522401	88522401	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggggcaaccctgccagtggTggatgggggaaaacacccat	15	10	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	88522401	88522401	T	G	SNP	NTRK3	ENST00000558306	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	NTRK3	HGNC	ENSG00000140538	36	0	0	34	12	25.53	-	-	-	G	88522401	T	G	88522401	1	3	232	0	1	0	0	0	0	0	0	0	10781	1711	59	5		5	NTRK3	15	88522401	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1714369	88522401	14008991	2244	17770										
NTRK3	0	genome.wustl.edu	37	chr15	88522426	88522426	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggggaaaacacccatctggTggtgttaaagggtgccgggg	18	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	88522426	88522426	T	G	SNP	NTRK3	ENST00000558306	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.012	-	-	-	no_errors	NTRK3	HGNC	ENSG00000140538	42	0	0	45	12	21.05	-	-	-	G	88522426	T	G	88522426	1	3	232	0	1	0	0	0	0	0	0	0	10781	1711	59	5		5	NTRK3	15	88522426	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	25	88522426	14008966	2245	17771										
KIF7	0	genome.wustl.edu	37	chr15	90189238	90189238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagcaactcagctccagccTccctgccatttgtcacctgc	6	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	90189238	90189238	T	C	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.1808	p.E603G	0.917	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	152	0	0	83	16	16.16	-	-	-	C	90189238	T	C	90189238	3	2	232	1	0	0	0	0	1	0	0	0	8361	1551	54	5	2271	5	KIF7	15	90189238	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1666812	90189238	12342154	2246	17772										
C15orf38	0	genome.wustl.edu	37	chr15	90446510	90446510	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctgcagcccccttcgaacActtttgggccatgatgttgt	10	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	90446510	90446510	A	C	SNP	C15orf38	ENST00000357484	human	ensembl	69_37n	-1	known	missense	c.610	p.C204G	0.997	pfam_UPF0552	pfam_UPF0552	-	no_errors	C15orf38	HGNC	ENSG00000242498	168	1	0.59	251	29	10.25	-	-	-	C	90446510	A	C	90446510	3	2	232	1	0	0	0	0	1	0	0	0	1804	159	6	5	78	5	C15orf38	15	90446510	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	257272	90446510	12084882	2247	17773										
VPS33B	0	genome.wustl.edu	37	chr15	91542959	91542959	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctcagagaatgtacaaccAcccaagaacaccaccaagat	5	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	91542959	91542959	A	C	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	silent	c.1722	p.G574	0.322	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	238	0	0	311	49	13.61	-	-	-	C	91542959	A	C	91542959	2	2	232	1	0	0	0	0	0	0	0	1	17299	146	6	5		5	VPS33B	15	91542959	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1096449	91542959	10988433	2248	17774										
RGMA	0	genome.wustl.edu	37	chr15	93588831	93588831	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggccccgtgcttgtccccAccgttcttagagccatccac	8	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	93588831	93588831	A	C	SNP	RGMA	ENST00000329082	human	ensembl	69_37n	-1	known	silent	c.750	p.G250	0.008	pfam_RGM_C	pfam_RGM_N,pfam_RGM_C	-	no_errors	RGMA	HGNC	ENSG00000182175	21	0	0	15	6	27.27	-	-	-	C	93588831	A	C	93588831	2	2	232	1	0	0	0	0	0	0	0	1	13363	146	6	5		5	RGMA	15	93588831	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2045872	93588831	8942561	2249	17775										
SYNM	0	genome.wustl.edu	37	chr15	99672425	99672425	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctccactttcagacaaggTggagttgggtgtcataggag	14	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	99672425	99672425	T	G	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	missense	c.3857	p.V1286G	0.000	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	120	0	0	125	23	15.23	-	-	-	G	99672425	T	G	99672425	3	3	232	1	0	0	0	0	1	0	0	0	15547	1696	59	5	3873	5	SYNM	15	99672425	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6083594	99672425	2858967	2250	17776										
LRRC28	0	genome.wustl.edu	37	chr15	99926272	99926272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtggcttactgctgctccAcccagtgtctgcagactttt	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	99926272	99926272	A	C	SNP	LRRC28	ENST00000301981	human	ensembl	69_37n	1	known	missense	c.1069	p.T357P	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	386	1	0.26	418	63	13.07	-	-	-	C	99926272	A	C	99926272	3	2	232	1	0	0	0	0	1	0	0	0	9048	159	6	5	1103	5	LRRC28	15	99926272	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	253847	99926272	2605120	2251	17777										
LRRK1	0	genome.wustl.edu	37	chr15	101605944	101605944	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtgatgtaccactccaccAcctaccagctgtgtgcccgg	10	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	15	101605944	101605944	A	C	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.5302	p.T1768P	0.994	superfamily_WD40_repeat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	59	0	0	35	6	14.63	-	-	-	C	101605944	A	C	101605944	3	2	232	1	0	0	0	0	1	0	0	0	9098	159	6	5	5424	5	LRRK1	15	101605944	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1679672	101605944	925448	2252	17778										
ITFG3	0	genome.wustl.edu	37	chr16	309556	309556	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctttttctttataaaaacAccaacagcagcaacaatttc	2	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	309556	309556	A	C	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	missense	c.343	p.T115P	0.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	108	0	0	74	19	20.43	-	-	-	C	309556	A	C	309556	3	2	232	1	0	0	0	0	1	0	0	0	7925	159	6	5	349	5	ITFG3	16	309556	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		309556	90045197	2253	17779										
SRRM2	0	genome.wustl.edu	37	chr16	2812584	2812584	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcgctcacgctccagaacAccagccaggagagggaggtc	14	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2812584	2812584	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.2055	p.T685	0.222	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	359	1	0.28	301	37	10.91	-	-	-	C	2812584	A	C	2812584	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2812584	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2503028	2812584	87542169	2254	17780			12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2812962	2812962	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagctaaatctagaacgccAcccagacgcagtcgctccag	8	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2812962	2812962	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.2433	p.P811	0.171	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	1105	9	0.8	908	167	15.52	-	-	-	C	2812962	A	C	2812962	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2812962	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	378	2812962	87541791	2255	17781			12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2813073	2813073	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctaaagtgaaatctggaacAccaccgaggcaagggtccat							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2813073	2813073	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.2544	p.T848	0.997	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	753	6	0.79	576	101	14.85	-	-	-	C	2813073	A	C	2813073	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2813073	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	111	2813073	87541680	2256	17782	195	2	12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2813076	2813076	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagtgaaatctggaacaccAccgaggcaagggtccataac							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2813076	2813076	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.2547	p.P849	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	761	3	0.39	584	84	12.44	-	-	-	C	2813076	A	C	2813076	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2813076	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	2813076	87541677	2257	17783	195	2	12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2813157	2813157	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggagctgttttgaatcatcAcctgaccctgagttgaaatc	9	10	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2813157	2813157	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.2628	p.S876	0.007	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	495	1	0.2	350	72	16.98	-	-	-	C	2813157	A	C	2813157	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2813157	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	81	2813157	87541596	2258	17784			12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2814251	2814251	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatgaagagttaatggaggTggtagagaagtctgaagaac	15	2	1	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2814251	2814251	T	G	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.3722	p.V1241G	0.960	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	537	2	0.37	351	67	15.91	-	-	-	G	2814251	T	G	2814251	3	3	232	1	0	0	0	0	1	0	0	0	15260	1696	59	5	3760	5	SRRM2	16	2814251	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1094	2814251	87540502	2259	17785			12	42		7	6	4378	N	T_A	7.619984e-05
SRRM2	0	genome.wustl.edu	37	chr16	2816961	2816961	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccttggcagctctagaacAcccatgtctgtcctgcagca	8	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	2816961	2816961	A	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.6432	p.T2144	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	237	2	0.83	141	27	16.07	-	-	-	C	2816961	A	C	2816961	2	2	232	1	0	0	0	0	0	0	0	1	15260	146	6	5		5	SRRM2	16	2816961	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2710	2816961	87537792	2260	17786			12	42		7	6	4378	N	T_A	7.619984e-05
TIGD7	0	genome.wustl.edu	37	chr16	3350381	3350381	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagaccgcatcatctacatcAccatatttggctcccgttgt	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	3350381	3350381	A	C	SNP	TIGD7	ENST00000268674	human	ensembl	69_37n	-1	known	silent	c.234	p.G78	0.859	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993	116	1	0.85	103	22	17.6	-	-	-	C	3350381	A	C	3350381	2	2	232	1	0	0	0	0	0	0	0	1	15996	146	6	5		5	TIGD7	16	3350381	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	533420	3350381	87004372	2261	17787										
OR2C1	0	genome.wustl.edu	37	chr16	3406268	3406268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcctttggctgggggccAccgagtgcatcctgctggtg	14	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	3406268	3406268	A	C	SNP	OR2C1	ENST00000304936	human	ensembl	69_37n	1	known	missense	c.328	p.T110P	0.070	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158	83	0	0	107	22	16.79	-	-	-	C	3406268	A	C	3406268	3	2	232	1	0	0	0	0	1	0	0	0	11065	159	6	5	330	5	OR2C1	16	3406268	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55887	3406268	86948485	2262	17788										
DNAJA3	0	genome.wustl.edu	37	chr16	4498775	4498775	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccagaagattcggatgggTgggaaaggcatcccccggat	15	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	4498775	4498775	T	G	SNP	DNAJA3	ENST00000262375	human	ensembl	69_37n	1	known	silent	c.1167	p.G389	0.997	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA3	HGNC	ENSG00000103423	38	0	0	38	8	16.67	-	-	-	G	4498775	T	G	4498775	2	3	232	1	0	0	0	0	0	0	0	1	4648	1683	59	5		5	DNAJA3	16	4498775	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1092507	4498775	85855978	2263	17789										
PPL	0	genome.wustl.edu	37	chr16	4934979	4934979	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagtcacctctttgacttccAcctgggggcctcgcctcctg	9	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	4934979	4934979	A	C	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	missense	c.3677	p.V1226G	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	142	0	0	91	19	16.81	-	-	-	C	4934979	A	C	4934979	3	2	232	1	0	0	0	0	1	0	0	0	12411	159	6	5	1597	5	PPL	16	4934979	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	436204	4934979	85419774	2264	17790										
ABAT	0	genome.wustl.edu	37	chr16	8862752	8862752	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctttgactggcccatcgcAccgttcccacggctgaaata	8	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	8862752	8862752	A	C	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	silent	c.738	p.A246	0.025	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	124	1	0.8	125	24	16.11	-	-	-	C	8862752	A	C	8862752	2	2	232	1	0	0	0	0	0	0	0	1	27	146	6	5		5	ABAT	16	8862752	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3927773	8862752	81492001	2265	17791										
TEKT5	0	genome.wustl.edu	37	chr16	10788505	10788505	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgcagtgtgggcaggatggTgggcggccgcagggtactgg	22	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	10788505	10788505	T	G	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	missense	c.226	p.T76P	0.991	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	54	0	0	29	6	16.67	-	-	-	G	10788505	T	G	10788505	3	3	232	1	0	0	0	0	1	0	0	0	15851	1696	59	5	1259	5	TEKT5	16	10788505	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1925753	10788505	79566248	2266	17792										
TXNDC11	0	genome.wustl.edu	37	chr16	11824565	11824565	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtagagaagtggtttcatcAcccggcggacaaacttctca	10	10	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	11824565	11824565	A	C	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.635	p.V212G	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	108	0	0	114	39	25.49	-	-	-	C	11824565	A	C	11824565	3	2	232	1	0	0	0	0	1	0	0	0	16889	159	6	5	2277	5	TXNDC11	16	11824565	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1036060	11824565	78530188	2267	17793										
ERCC4	0	genome.wustl.edu	37	chr16	14028087	14028087	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctagaaagcaacccaaagTgggaggcactgactgaagta	11	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	14028087	14028087	T	G	SNP	ERCC4	ENST00000311895	human	ensembl	69_37n	1	known	missense	c.1141	p.W381G	1.000	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595	185	0	0	198	23	10.31	-	-	-	G	14028087	T	G	14028087	3	3	232	1	0	0	0	0	1	0	0	0	5252	1696	59	5	1167	5	ERCC4	16	14028087	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2203522	14028087	76326666	2268	17794										
MKL2	0	genome.wustl.edu	37	chr16	14334207	14334207	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attccaccagatcagaagggTgagaagaatgagccgcagat	12	8	1	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	14334207	14334207	T	G	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	silent	c.912	p.G304	0.579	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	264	0	0	235	48	16.9	-	-	-	G	14334207	T	G	14334207	2	3	232	1	0	0	0	0	0	0	0	1	9673	1683	59	5		5	MKL2	16	14334207	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	306120	14334207	76020546	2269	17795										
KIAA0430	0	genome.wustl.edu	37	chr16	15729751	15729751	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taccatgacatgactggaagTggagttttccacaacagggc	11	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	15729751	15729751	T	G	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.593	p.H198P	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	127	1	0.78	126	18	12.41	-	-	-	G	15729751	T	G	15729751	3	3	232	1	0	0	0	0	1	0	0	0	8229	1696	59	5	4738	5	KIAA0430	16	15729751	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1395544	15729751	74625002	2270	17796										
KIAA0430	0	genome.wustl.edu	37	chr16	15729775	15729775	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttttccacaacagggcaggTgtttgcaggaagacaggtta	13	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	15729775	15729775	T	G	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.569	p.H190P	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	137	1	0.72	124	29	18.71	-	-	-	G	15729775	T	G	15729775	3	3	232	1	0	0	0	0	1	0	0	0	8229	1696	59	5	4762	5	KIAA0430	16	15729775	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	24	15729775	74624978	2271	17797										
MYH11	0	genome.wustl.edu	37	chr16	15931904	15931904	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcatctttcccaaccgtgAccttcttgccattctccacc	4	17	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	15931904	15931904	A	C	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.206	p.V69G	0.995	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	151	0	0	149	27	15.34	-	-	-	C	15931904	A	C	15931904	3	2	232	1	0	0	0	0	1	0	0	0	10103	275	10	5	5932	5	MYH11	16	15931904	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	202129	15931904	74422849	2272	17798										
XYLT1	0	genome.wustl.edu	37	chr16	17211580	17211580	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcaactggcacccagtggTggagaattttcactgtccag	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	17211580	17211580	T	G	SNP	XYLT1	ENST00000261381	human	ensembl	69_37n	-1	known	missense	c.2480	p.H827P	1.000	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	129	1	0.76	151	27	15.17	-	-	-	G	17211580	T	G	17211580	3	3	232	1	0	0	0	0	1	0	0	0	17560	1696	59	5	407	5	XYLT1	16	17211580	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1279676	17211580	73143173	2273	17799										
SMG1	0	genome.wustl.edu	37	chr16	18826947	18826947	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctcatagggaacatcttcAccatctgccagagcagcttc	7	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	18826947	18826947	A	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.10332	p.G3444	0.998	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	134	0	0	93	17	15.45	-	-	-	C	18826947	A	C	18826947	2	2	232	1	0	0	0	0	0	0	0	1	14884	146	6	5		5	SMG1	16	18826947	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1615367	18826947	71527806	2274	17800										
SMG1	0	genome.wustl.edu	37	chr16	18844387	18844387	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcggtggtctgctcaataagAccgtccagttcatgcagcat	10	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	18844387	18844387	A	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.8667	p.G2889	0.563	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	274	0	0	200	37	15.55	-	-	-	C	18844387	A	C	18844387	2	2	232	1	0	0	0	0	0	0	0	1	14884	262	10	5		5	SMG1	16	18844387	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	17440	18844387	71510366	2275	17801										
TMC7	0	genome.wustl.edu	37	chr16	19058514	19058514	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggatcggagcctttttctcAccccttctccctgcaattgc	7	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	19058514	19058514	A	C	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	silent	c.1683	p.S561	0.027	pfam_TMC	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	330	2	0.6	276	70	20.17	-	-	-	C	19058514	A	C	19058514	2	2	232	1	0	0	0	0	0	0	0	1	16085	146	6	5		5	TMC7	16	19058514	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	214127	19058514	71296239	2276	17802										
GP2	0	genome.wustl.edu	37	chr16	20335299	20335299	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccatccccaagggcagggTgggtcccattcagccacatg	12	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20335299	20335299	T	G	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	missense	c.374	p.H125P	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	94	0	0	68	20	22.47	-	-	-	G	20335299	T	G	20335299	3	3	232	1	0	0	0	0	1	0	0	0	6632	1696	59	5	1279	5	GP2	16	20335299	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1276785	20335299	70019454	2277	17803										
UMOD	0	genome.wustl.edu	37	chr16	20362022	20362022	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgatgaaccaagaggccaccAccaccatcagcatccaagtc	7	15	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20362022	20362022	A	C	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	missense	c.38	p.V13G	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	38	0	0	30	9	23.08	-	-	-	C	20362022	A	C	20362022	3	2	232	1	0	0	0	0	1	0	0	0	17076	159	6	5	1924	5	UMOD	16	20362022	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	26723	20362022	69992731	2278	17804										
ACSM1	0	genome.wustl.edu	37	chr16	20635536	20635536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggacaataaaggccttcaccAcctgcagaatgaagtcatgg	10	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20635536	20635536	A	C	SNP	ACSM1	ENST00000307493	human	ensembl	69_37n	-1	known	missense	c.1529	p.V510G	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743	412	0	0	489	67	12.01	-	-	-	C	20635536	A	C	20635536	3	2	232	1	0	0	0	0	1	0	0	0	182	173	6	5	212	5	ACSM1	16	20635536	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	273514	20635536	69719217	2279	17805										
ACSM3	0	genome.wustl.edu	37	chr16	20803602	20803602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaaaatgccctgaatgaacAcccttcagttgcagagtcag	9	10	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20803602	20803602	A	C	SNP	ACSM3	ENST00000289416	human	ensembl	69_37n	1	known	missense	c.1499	p.H500P	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187	232	1	0.43	201	41	16.87	-	-	-	C	20803602	A	C	20803602	3	2	232	1	0	0	0	0	1	0	0	0	185	159	6	5	1634	5	ACSM3	16	20803602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	168066	20803602	69551151	2280	17806										
DCUN1D3	0	genome.wustl.edu	37	chr16	20873717	20873717	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgttgacgaggatatctccAcctggcttgccacagggtgg	13	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20873717	20873717	A	C	SNP	DCUN1D3	ENST00000324344	human	ensembl	69_37n	-1	known	silent	c.144	p.G48	1.000	NULL	pfam_PONY_dom	-	no_errors	DCUN1D3	HGNC	ENSG00000188215	198	2	0.99	174	36	16.9	-	-	-	C	20873717	A	C	20873717	2	2	232	1	0	0	0	0	0	0	0	1	4346	146	6	5		5	DCUN1D3	16	20873717	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	70115	20873717	69481036	2281	17807										
DNAH3	0	genome.wustl.edu	37	chr16	20975299	20975299	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgagatacaaaagaagatggTggcagaatgcacagccactg	12	8	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	20975299	20975299	T	G	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.9907	p.T3303P	0.997	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	265	2	0.75	263	33	11.07	-	-	-	G	20975299	T	G	20975299	3	3	232	1	0	0	0	0	1	0	0	0	4639	1696	59	5	2482	5	DNAH3	16	20975299	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	101582	20975299	69379454	2282	17808										
ANKS4B	0	genome.wustl.edu	37	chr16	21261543	21261543	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaagatacagcagaacaggTggggaaggaaggcagaagtg	16	5	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	21261543	21261543	T	G	SNP	ANKS4B	ENST00000311620	human	ensembl	69_37n	1	known	missense	c.656	p.V219G	0.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKS4B	HGNC	ENSG00000175311	153	0	0	117	22	15.83	-	-	-	G	21261543	T	G	21261543	3	3	232	1	0	0	0	0	1	0	0	0	690	1696	59	5	662	5	ANKS4B	16	21261543	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	286244	21261543	69093210	2283	17809										
UQCRC2	0	genome.wustl.edu	37	chr16	21968763	21968763	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagttaccaaatggcttggTgattgcttctttggaaaact	9	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	21968763	21968763	T	G	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	missense	c.143	p.V48G	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	282	0	0	190	24	11.21	-	-	-	G	21968763	T	G	21968763	3	3	232	1	0	0	0	0	1	0	0	0	17117	1696	59	5	153	5	UQCRC2	16	21968763	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	707220	21968763	68385990	2284	17810										
GGA2	0	genome.wustl.edu	37	chr16	23478980	23478980	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttcgctgaaaggctgtccAccttggttgaatgtcagctt	10	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	23478980	23478980	A	C	SNP	GGA2	ENST00000309859	human	ensembl	69_37n	-1	known	silent	c.1773	p.G591	0.659	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA2	HGNC	ENSG00000103365	44	0	0	43	7	14	-	-	-	C	23478980	A	C	23478980	2	2	232	1	0	0	0	0	0	0	0	1	6405	146	6	5		5	GGA2	16	23478980	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1510217	23478980	66875773	2285	17811										
ERN2	0	genome.wustl.edu	37	chr16	23703405	23703405	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaccaggtcccgggcaaccAccttgtctggaggatggaag	13	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	23703405	23703405	A	C	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.2399	p.V800G	0.990	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	117	0	0	44	16	26.67	-	-	-	C	23703405	A	C	23703405	3	2	232	1	0	0	0	0	1	0	0	0	5275	159	6	5	541	5	ERN2	16	23703405	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	224425	23703405	66651348	2286	17812										
ERN2	0	genome.wustl.edu	37	chr16	23713541	23713541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcagttccactccccagggTgggatggaccctcagcatgg	13	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	23713541	23713541	T	G	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.1279	p.T427P	0.023	NULL	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	84	0	0	76	28	26.67	-	-	-	G	23713541	T	G	23713541	3	3	232	1	0	0	0	0	1	0	0	0	5275	1696	59	5	1693	5	ERN2	16	23713541	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10136	23713541	66641212	2287	17813										
RBBP6	0	genome.wustl.edu	37	chr16	24578776	24578776	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcccaacaacacaagcaccAcctttgtccagggaagaatt	6	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24578776	24578776	A	C	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	silent	c.1902	p.P634	0.998	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	276	1	0.36	262	63	19.21	-	-	-	C	24578776	A	C	24578776	2	2	232	1	0	0	0	0	0	0	0	1	13186	146	6	5		5	RBBP6	16	24578776	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	865235	24578776	65775977	2288	17814										
TNRC6A	0	genome.wustl.edu	37	chr16	24788593	24788593	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttggatctgctgttaaggTgttaaacagccagtcagaaa	10	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24788593	24788593	T	G	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.503	p.V168G	0.999	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	339	0	0	260	37	12.46	-	-	-	G	24788593	T	G	24788593	3	3	232	1	0	0	0	0	1	0	0	0	16435	1696	59	5	521	5	TNRC6A	16	24788593	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	209817	24788593	65566160	2289	17815										
TNRC6A	0	genome.wustl.edu	37	chr16	24802373	24802373	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctcaaactgccagggggggTgggaagatgattctgctgct	16	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24802373	24802373	T	G	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.2410	p.W804G	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	76	0	0	90	17	15.89	-	-	-	G	24802373	T	G	24802373	3	3	232	1	0	0	0	0	1	0	0	0	16435	1696	59	5	2432	5	TNRC6A	16	24802373	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	13780	24802373	65552380	2290	17816										
TNRC6A	0	genome.wustl.edu	37	chr16	24831605	24831605	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggactgactggtcagaagccAcccttgtctacgtgggataa	12	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24831605	24831605	A	C	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	silent	c.5226	p.P1742	0.979	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	135	0	0	113	37	24.34	-	-	-	C	24831605	A	C	24831605	2	2	232	1	0	0	0	0	0	0	0	1	16435	146	6	5		5	TNRC6A	16	24831605	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	29232	24831605	65523148	2291	17817										
SLC5A11	0	genome.wustl.edu	37	chr16	24920379	24920379	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccctcatcactgtctccAccgtgagctggttcacagag	8	15	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24920379	24920379	A	C	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	missense	c.1612	p.T538P	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	45	0	0	48	11	18.64	-	-	-	C	24920379	A	C	24920379	3	2	232	1	0	0	0	0	1	0	0	0	14752	159	6	5	1662	5	SLC5A11	16	24920379	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	88774	24920379	65434374	2292	17818										
ARHGAP17	0	genome.wustl.edu	37	chr16	24975628	24975628	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatttgtgagcttggttccAcctgcaaaacaaaggggtca	12	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	24975628	24975628	A	C	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.463	p.W155G	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	207	0	0	167	23	12.11	-	-	-	C	24975628	A	C	24975628	3	2	232	1	0	0	0	0	1	0	0	0	869	173	6	5	2238	5	ARHGAP17	16	24975628	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55249	24975628	65379125	2293	17819										
XPO6	0	genome.wustl.edu	37	chr16	28117482	28117482	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatcttcagaaacttctccAccacccggcagcctgtgctg	9	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	28117482	28117482	A	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.2666	p.V889G	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	32	0	0	30	10	24.39	-	-	-	C	28117482	A	C	28117482	3	2	232	1	0	0	0	0	1	0	0	0	17545	159	6	5	731	5	XPO6	16	28117482	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3141854	28117482	62237271	2294	17820										
CD19	0	genome.wustl.edu	37	chr16	28943404	28943404	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaacctctagtggtgaaggTggaaggtatgtccaaagggc	16	6	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	28943404	28943404	T	G	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	missense	c.83	p.V28G	0.989	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	189	1	0.52	197	33	14.29	-	-	-	G	28943404	T	G	28943404	3	3	232	1	0	0	0	0	1	0	0	0	3002	1696	59	5	85	5	CD19	16	28943404	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	825922	28943404	61411349	2295	17821										
SPNS1	0	genome.wustl.edu	37	chr16	28992840	28992840	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgctgctgttcctggtagTgcgggagccgccaaggggag	17	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	28992840	28992840	T	G	SNP	SPNS1	ENST00000311008	human	ensembl	69_37n	1	known	missense	c.713	p.V238G	0.980	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682	53	0	0	37	5	11.63	-	-	-	G	28992840	T	G	28992840	3	3	232	1	0	0	0	0	1	0	0	0	15165	1696	59	5	735	5	SPNS1	16	28992840	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	49436	28992840	61361913	2296	17822										
TAOK2	0	genome.wustl.edu	37	chr16	29989483	29989483	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggaagcagtccaatgaggTgggccaggtgcaatacagcc	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	29989483	29989483	T	G	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	splice_site	c.204+2	e2+2	0.998	-	-	-	no_errors	TAOK2	HGNC	ENSG00000149930	244	2	0.81	193	35	15.35	-	-	-	G	29989483	T	G	29989483	5	3	232	1	0	0	0	0	0	0	1	0	15640	1710	59	5	212	5	TAOK2	16	29989483	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	996643	29989483	60365270	2297	17823										
TAOK2	0	genome.wustl.edu	37	chr16	29989630	29989630	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagctccggcatcccaacAccattcagtaccggggctgt	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	29989630	29989630	A	C	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	missense	c.262	p.T88P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	306	0	0	242	33	11.91	-	-	-	C	29989630	A	C	29989630	3	2	232	1	0	0	0	0	1	0	0	0	15640	159	6	5	272	5	TAOK2	16	29989630	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	147	29989630	60365123	2298	17824										
SEPHS2	0	genome.wustl.edu	37	chr16	30455971	30455971	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggttccttgaagaagcccaaAccgtccactggccttgctga	10	13	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	30455971	30455971	A	C	SNP	SEPHS2	ENST00000542752	human	ensembl	69_37n	-1	known	missense	c.907	p.F303V	0.999	pfam_AIR_synth_C,superfamily_AIR_synth_C,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918	106	0	0	66	18	21.43	-	-	-	C	30455971	A	C	30455971	3	2	232	1	0	0	0	0	1	0	0	0	14143	43	2	5	272	5	SEPHS2	16	30455971	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	466341	30455971	59898782	2299	17825										
SRCAP	0	genome.wustl.edu	37	chr16	30721028	30721028	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagctgcctccagtcctccAccccctgcttctcgcctgga	7	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	30721028	30721028	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.828	p.P276	0.999	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	152	1	0.65	133	39	22.54	-	-	-	C	30721028	A	C	30721028	2	2	232	1	0	0	0	0	0	0	0	1	15226	146	6	5		5	SRCAP	16	30721028	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	265057	30721028	59633725	2300	17826										
SRCAP	0	genome.wustl.edu	37	chr16	30736382	30736382	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacgccagccccccccaccAcctcgttcccctttttatct	4	22	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	30736382	30736382	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.5637	p.P1879	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	72	0	0	57	13	18.31	-	-	-	C	30736382	A	C	30736382	2	2	232	1	0	0	0	0	0	0	0	1	15226	146	6	5		5	SRCAP	16	30736382	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15354	30736382	59618371	2301	17827										
SRCAP	0	genome.wustl.edu	37	chr16	30740467	30740467	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctggccccagccaccccAccttttggacttataccgag	7	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	30740467	30740467	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.5839	p.T1947P	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	85	0	0	83	22	20.75	-	-	-	C	30740467	A	C	30740467	3	2	232	1	0	0	0	0	1	0	0	0	15226	159	6	5	5933	5	SRCAP	16	30740467	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4085	30740467	59614286	2302	17828										
SHCBP1	0	genome.wustl.edu	37	chr16	46615912	46615912	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatcagctcttctagatccActctttcagccacatctggc	5	15	6	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	46615912	46615912	A	C	SNP	SHCBP1	ENST00000303383	human	ensembl	69_37n	-1	known	missense	c.1748	p.V583G	0.005	NULL	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241	328	0	0	215	32	12.96	-	-	-	C	46615912	A	C	46615912	3	2	232	1	0	0	0	0	1	0	0	0	14363	159	6	5	274	5	SHCBP1	16	46615912	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	15875445	46615912	43738841	2303	17829										
MYLK3	0	genome.wustl.edu	37	chr16	46744613	46744613	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccgagagcccttcaaaggTgtcagcatcaaaatcccagc	8	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	46744613	46744613	T	G	SNP	MYLK3	ENST00000394809	human	ensembl	69_37n	-1	known	missense	c.2203	p.T735P	0.429	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795	246	1	0.4	200	24	10.67	-	-	-	G	46744613	T	G	46744613	3	3	232	1	0	0	0	0	1	0	0	0	10130	1696	59	5	268	5	MYLK3	16	46744613	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	128701	46744613	43610140	2304	17830										
MYLK3	0	genome.wustl.edu	37	chr16	46774003	46774003	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggcatcagactgcaccccActggtgctcagcacatgctt	9	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	46774003	46774003	A	C	SNP	MYLK3	ENST00000394809	human	ensembl	69_37n	-1	known	missense	c.534	p.S178R	0.066	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795	76	0	0	97	20	17.09	-	-	-	C	46774003	A	C	46774003	3	2	232	1	0	0	0	0	1	0	0	0	10130	156	6	5	1973	5	MYLK3	16	46774003	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	29390	46774003	43580750	2305	17831										
ABCC12	0	genome.wustl.edu	37	chr16	48175229	48175229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagaggccttctcaggacccAcccttgctacctcttcatcc	7	17	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	48175229	48175229	A	C	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.311	p.V104G	0.556	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	99	0	0	106	24	18.32	-	-	-	C	48175229	A	C	48175229	3	2	232	1	0	0	0	0	1	0	0	0	52	159	6	5	3876	5	ABCC12	16	48175229	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1401226	48175229	42179524	2306	17832										
ABCC12	0	genome.wustl.edu	37	chr16	48177908	48177908	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccggtagcctttcaccatcAccggcgtgagccaggaaaat	11	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	48177908	48177908	A	C	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.188	p.V63G	0.976	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	124	0	0	141	21	12.96	-	-	-	C	48177908	A	C	48177908	3	2	232	1	0	0	0	0	1	0	0	0	52	159	6	5	4003	5	ABCC12	16	48177908	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2679	48177908	42176845	2307	17833										
ABCC11	0	genome.wustl.edu	37	chr16	48265807	48265807	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccaccagaagagttgggcAcccagtatgtcctcttccta	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	48265807	48265807	A	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.26	p.V9G	0.077	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	276	0	0	199	25	11.16	-	-	-	C	48265807	A	C	48265807	3	2	232	1	0	0	0	0	1	0	0	0	51	159	6	5	4238	5	ABCC11	16	48265807	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	87899	48265807	42088946	2308	17834										
SALL1	0	genome.wustl.edu	37	chr16	51171317	51171317	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaagctggaaggatccccActtcctgatcttgccgccaa	9	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	51171317	51171317	A	C	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.3681	p.S1227R	0.831	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	79	0	0	34	5	12.82	-	-	-	C	51171317	A	C	51171317	3	2	232	1	0	0	0	0	1	0	0	0	13896	156	6	5	297	5	SALL1	16	51171317	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2905510	51171317	39183436	2309	17835										
CHD9	0	genome.wustl.edu	37	chr16	53358021	53358021	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgggggagacggcctaaaagTggaattgcaaaggccacagc	15	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	53358021	53358021	T	G	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.7908	p.S2636R	0.998	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	168	1	0.59	93	17	15.45	-	-	-	G	53358021	T	G	53358021	3	3	232	1	0	0	0	0	1	0	0	0	3361	1693	59	5	8010	5	CHD9	16	53358021	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2186704	53358021	36996732	2310	17836										
MMP2	0	genome.wustl.edu	37	chr16	55519641	55519641	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcctctggtgctccaccAcctacaactttgagaaggat	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	55519641	55519641	A	C	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	missense	c.784	p.T262P	1.000	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	247	1	0.4	214	24	10.04	-	-	-	C	55519641	A	C	55519641	3	2	232	1	0	0	0	0	1	0	0	0	9729	159	6	5	809	5	MMP2	16	55519641	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2161620	55519641	34835112	2311	17837										
BBS2	0	genome.wustl.edu	37	chr16	56531757	56531757	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccattgactggatgatatcAccagccaaatcaatatcatc	6	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	56531757	56531757	A	C	SNP	BBS2	ENST00000245157	human	ensembl	69_37n	-1	known	silent	c.1695	p.G565	0.999	pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124	120	0	0	80	19	19.19	-	-	-	C	56531757	A	C	56531757	2	2	232	1	0	0	0	0	0	0	0	1	1342	146	6	5		5	BBS2	16	56531757	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1012116	56531757	33822996	2312	17838										
MT1X	0	genome.wustl.edu	37	chr16	56717259	56717259	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccaaacccctccttcaacAcctgattcagaatcagacct	3	18	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	56717259	56717259	A	C	SNP	MT1X	ENST00000564974	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MT1X	HGNC	ENSG00000187193	22	0	0	10	5	33.33	-	-	-	C	56717259	A	C	56717259	1	2	232	0	1	0	0	0	0	0	0	0	9976	174	6	5		5	MT1X	16	56717259	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	185502	56717259	33637494	2313	17839										
NLRC5	0	genome.wustl.edu	37	chr16	57059457	57059457	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattatgggggacgtcaaggTggaagatggtgctgacgtga	17	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	57059457	57059457	T	G	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.602	p.V201G	0.083	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	117	0	0	127	18	12.41	-	-	-	G	57059457	T	G	57059457	3	3	232	1	0	0	0	0	1	0	0	0	10542	1696	59	5	616	5	NLRC5	16	57059457	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	342198	57059457	33295296	2314	17840										
NLRC5	0	genome.wustl.edu	37	chr16	57088712	57088712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccttcctgctggccaacAccttaagcctgtgtccacgg	9	17	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	57088712	57088712	A	C	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.3556	p.T1186P	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	247	1	0.4	202	30	12.93	-	-	-	C	57088712	A	C	57088712	3	2	232	1	0	0	0	0	1	0	0	0	10542	159	6	5	3646	5	NLRC5	16	57088712	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	29255	57088712	33266041	2315	17841										
CIAPIN1	0	genome.wustl.edu	37	chr16	57473134	57473134	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccttcagaaaaagacatccAccaggccgaaggatccgggc	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	57473134	57473134	A	C	SNP	CIAPIN1	ENST00000394391	human	ensembl	69_37n	-1	known	silent	c.270	p.G90	0.976	NULL	pfam_CIAPIN1	-	no_errors	CIAPIN1	HGNC	ENSG00000005194	304	1	0.33	261	40	13.25	-	-	-	C	57473134	A	C	57473134	2	2	232	1	0	0	0	0	0	0	0	1	3448	146	6	5		5	CIAPIN1	16	57473134	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	384422	57473134	32881619	2316	17842										
CNGB1	0	genome.wustl.edu	37	chr16	57921861	57921861	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgccttttgcccccttgccAcccatctttcctgtcatagc	5	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	57921861	57921861	A	C	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.3360	p.G1120	0.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	80	0	0	57	25	30.12	-	-	-	C	57921861	A	C	57921861	2	2	232	1	0	0	0	0	0	0	0	1	3630	146	6	5		5	CNGB1	16	57921861	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	448727	57921861	32432892	2317	17843										
CNOT1	0	genome.wustl.edu	37	chr16	58583780	58583780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggcataaattcttctttcAccgtttcctttagctcttca	4	11	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	58583780	58583780	A	C	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.3365	p.V1122G	1.000	superfamily_ARM-type_fold	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	199	2	1	134	26	16.05	-	-	-	C	58583780	A	C	58583780	3	2	232	1	0	0	0	0	1	0	0	0	3647	159	6	5	4087	5	CNOT1	16	58583780	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	661919	58583780	31770973	2318	17844										
CNOT1	0	genome.wustl.edu	37	chr16	58583801	58583801	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgtttcctttagctcttcaAcctagccggtcaatacgaca	6	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	58583801	58583801	A	C	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.3344	p.V1115G	1.000	superfamily_ARM-type_fold	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	185	0	0	120	29	19.46	-	-	-	C	58583801	A	C	58583801	3	2	232	1	0	0	0	0	1	0	0	0	3647	57	2	5	4108	5	CNOT1	16	58583801	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21	58583801	31770952	2319	17845										
SLC38A7	0	genome.wustl.edu	37	chr16	58712654	58712654	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaatgcaggtgccaaaggTgtagacagcgatggccacct	14	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	58712654	58712654	T	G	SNP	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	missense	c.415	p.T139P	1.000	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	21	0	0	15	6	28.57	-	-	-	G	58712654	T	G	58712654	3	3	232	1	0	0	0	0	1	0	0	0	14698	1696	59	5	1009	5	SLC38A7	16	58712654	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	128853	58712654	31642099	2320	17846										
PDP2	0	genome.wustl.edu	37	chr16	66919467	66919467	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaggacgtggtaaggctggTggtggggcacctggctgagg	21	6	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	66919467	66919467	T	G	SNP	PDP2	ENST00000311765	human	ensembl	69_37n	1	known	missense	c.1280	p.V427G	0.999	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PDP2	HGNC	ENSG00000172840	66	0	0	49	11	18.33	-	-	-	G	66919467	T	G	66919467	3	3	232	1	0	0	0	0	1	0	0	0	11759	1696	59	5	1282	5	PDP2	16	66919467	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8206813	66919467	23435286	2321	17847										
C16orf70	0	genome.wustl.edu	37	chr16	67168336	67168336	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcttcgagatggaactggAcctgcaggtttacgacttcg	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67168336	67168336	A	C	SNP	C16orf70	ENST00000219139	human	ensembl	69_37n	1	known	silent	c.627	p.G209	1.000	pfam_UPF0183	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149	118	0	0	77	16	16.84	-	-	-	C	67168336	A	C	67168336	2	2	232	1	0	0	0	0	0	0	0	1	1842	262	10	5		5	C16orf70	16	67168336	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	248869	67168336	23186417	2322	17848										
KIAA0895L	0	genome.wustl.edu	37	chr16	67210838	67210838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacccgggtattatccagcAccccatggggccgcaggtgg	14	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67210838	67210838	A	C	SNP	KIAA0895L	ENST00000290881	human	ensembl	69_37n	-1	known	missense	c.1292	p.V431G	0.992	pfam_DUF1704	pfam_DUF1704	-	no_errors	KIAA0895L	HGNC	ENSG00000196123	134	1	0.73	72	20	21.28	-	-	-	C	67210838	A	C	67210838	3	2	232	1	0	0	0	0	1	0	0	0	8250	159	6	5	127	5	KIAA0895L	16	67210838	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42502	67210838	23143915	2323	17849										
KCTD19	0	genome.wustl.edu	37	chr16	67327854	67327854	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctttggggggctctcagggTggctcccccagtgtccagga	15	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67327854	67327854	T	G	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	missense	c.1811	p.H604P	0.842	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	114	1	0.87	60	10	14.29	-	-	-	G	67327854	T	G	67327854	3	3	232	1	0	0	0	0	1	0	0	0	8160	1696	59	5	989	5	KCTD19	16	67327854	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	117016	67327854	23026899	2324	17850										
KCTD19	0	genome.wustl.edu	37	chr16	67335712	67335712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccatgttcatccggtaccAccttacggcttcagtgagtg	9	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67335712	67335712	A	C	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	missense	c.757	p.W253G	0.006	superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	135	0	0	126	17	11.81	-	-	-	C	67335712	A	C	67335712	3	2	232	1	0	0	0	0	1	0	0	0	8160	159	6	5	2071	5	KCTD19	16	67335712	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7858	67335712	23019041	2325	17851										
FAM65A	0	genome.wustl.edu	37	chr16	67573656	67573656	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgtatgatctggacaaggTgagtatgcatggaatggtac	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67573656	67573656	T	G	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	splice_site	c.420+2	e5+2	1.000	-	-	-	no_errors	FAM65A	HGNC	ENSG00000039523	340	1	0.29	148	22	12.79	-	-	-	G	67573656	T	G	67573656	5	3	232	1	0	0	0	0	0	0	1	0	5644	1710	59	5	376	5	FAM65A	16	67573656	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	237944	67573656	22781097	2326	17852										
FAM65A	0	genome.wustl.edu	37	chr16	67575334	67575334	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgcactcttggctacaggTgacagaactgaagggcctgg	13	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67575334	67575334	T	G	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.863	p.V288G	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	479	3	0.62	244	36	12.81	-	-	-	G	67575334	T	G	67575334	3	3	232	1	0	0	0	0	1	0	0	0	5644	1710	59	5	841	5	FAM65A	16	67575334	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1678	67575334	22779419	2327	17853										
FAM65A	0	genome.wustl.edu	37	chr16	67575397	67575397	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctcctgtgagaccaaggAcctgtttgccgccctgcccc	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67575397	67575397	A	C	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.926	p.D309A	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	334	2	0.6	176	21	10.61	-	-	-	C	67575397	A	C	67575397	3	2	232	1	0	0	0	0	1	0	0	0	5644	275	10	5	904	5	FAM65A	16	67575397	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	63	67575397	22779356	2328	17854										
FAM65A	0	genome.wustl.edu	37	chr16	67576866	67576866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatggcccccagaactccccAcccaagtcctgcccattcca	5	20	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67576866	67576866	A	C	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.2237	p.H746P	0.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	290	2	0.68	89	37	28.91	-	-	-	C	67576866	A	C	67576866	3	2	232	1	0	0	0	0	1	0	0	0	5644	159	6	5	2223	5	FAM65A	16	67576866	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1469	67576866	22777887	2329	17855										
EDC4	0	genome.wustl.edu	37	chr16	67911294	67911294	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgtggcgcttggctctggTtaatggcaaaattcagtatc	12	8	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	67911294	67911294	T	G	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	missense	c.626	p.V209G	0.979	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	52	0	0	27	4	12.5	-	-	-	G	67911294	T	G	67911294	3	3	232	1	0	0	0	0	1	0	0	0	4943	1725	60	5	644	5	EDC4	16	67911294	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	334428	67911294	22443459	2330	17856										
NFATC3	0	genome.wustl.edu	37	chr16	68156494	68156494	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggacttggacactcattatcAcccaggcaatctccttgcca	7	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	68156494	68156494	A	C	SNP	NFATC3	ENST00000570212	human	ensembl	69_37n	1	putative	missense	c.661	p.T221P	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NFATC3	HGNC	ENSG00000072736	126	0	0	84	19	18.27	-	-	-	C	68156494	A	C	68156494	3	2	232	1	0	0	0	0	1	0	0	0	10436	146	6	5	714	5	NFATC3	16	68156494	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	245200	68156494	22198259	2331	17857										
SLC7A6	0	genome.wustl.edu	37	chr16	68308700	68308700	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taacaccagccagtcccaggTggaagaagatgtcagctcgc	11	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	68308700	68308700	T	G	SNP	SLC7A6	ENST00000219343	human	ensembl	69_37n	1	known	missense	c.71	p.V24G	0.009	NULL	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064	87	0	0	43	12	21.43	-	-	-	G	68308700	T	G	68308700	3	3	232	1	0	0	0	0	1	0	0	0	14790	1696	59	5	73	5	SLC7A6	16	68308700	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	152206	68308700	22046053	2332	17858										
SLC7A6	0	genome.wustl.edu	37	chr16	68328637	68328637	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgggctcccgggagggccAcctaccggaccttctgtcca	13	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	68328637	68328637	A	C	SNP	SLC7A6	ENST00000219343	human	ensembl	69_37n	1	known	missense	c.1052	p.H351P	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064	188	1	0.53	148	23	13.37	-	-	-	C	68328637	A	C	68328637	3	2	232	1	0	0	0	0	1	0	0	0	14790	159	6	5	1074	5	SLC7A6	16	68328637	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19937	68328637	22026116	2333	17859										
ZFP90	0	genome.wustl.edu	37	chr16	68592013	68592013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatgctggagaactatagccAcctggtttctcttggtaagg	12	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	68592013	68592013	A	C	SNP	ZFP90	ENST00000398253	human	ensembl	69_37n	1	known	missense	c.146	p.H49P	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939	283	0	0	282	33	10.38	-	-	-	C	68592013	A	C	68592013	3	2	232	1	0	0	0	0	1	0	0	0	17750	159	6	5	152	5	ZFP90	16	68592013	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	263376	68592013	21762740	2334	17860										
CDH1	0	genome.wustl.edu	37	chr16	68849663	68849663	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttatggaacagaaaataacGtaagtgtgaggatttttcaa	9	3	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	68849663	68849663	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.1565+1	e10+1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	207	0	0	160	81	33.61	-	-	-	A	68849663	G	A	68849663	5	1	232	1	0	0	0	0	0	0	1	0	3124	1159	40	1	1604	1	CDH1	16	68849663	Splice_Site	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	257650	68849663	21505090	2335	17861										
SNTB2	0	genome.wustl.edu	37	chr16	69304156	69304156	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaagagatgcctgggcgtcAccatgccacagctacccact	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	69304156	69304156	A	C	SNP	SNTB2	ENST00000336278	human	ensembl	69_37n	1	known	silent	c.1116	p.S372	0.262	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB2	HGNC	ENSG00000168807	133	0	0	102	25	19.69	-	-	-	C	69304156	A	C	69304156	2	2	232	1	0	0	0	0	0	0	0	1	14962	146	6	5		5	SNTB2	16	69304156	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	454493	69304156	21050597	2336	17862										
COG8	0	genome.wustl.edu	37	chr16	69368585	69368585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcagcgtccccggctgggTggctggcacagcagcaggca	16	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	69368585	69368585	T	G	SNP	COG8	ENST00000306875	human	ensembl	69_37n	-1	known	missense	c.1252	p.T418P	0.010	pirsf_COG_su8	pfam_Dor1,superfamily_Cullin_repeat-like_dom,pirsf_COG_su8	-	no_errors	COG8	HGNC	ENSG00000213380	40	0	0	28	9	24.32	-	-	-	G	69368585	T	G	69368585	3	3	232	1	0	0	0	0	1	0	0	0	3694	1696	59	5	598	5	COG8	16	69368585	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	64429	69368585	20986168	2337	17863										
NFAT5	0	genome.wustl.edu	37	chr16	69681172	69681172	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcttgtacatctcaccaccAcctgaggacttgctggataa	8	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	69681172	69681172	A	C	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	silent	c.495	p.P165	0.997	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	120	0	0	77	17	18.09	-	-	-	C	69681172	A	C	69681172	2	2	232	1	0	0	0	0	0	0	0	1	10432	146	6	5		5	NFAT5	16	69681172	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	312587	69681172	20673581	2338	17864										
NFAT5	0	genome.wustl.edu	37	chr16	69727439	69727439	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggccctgggctcccttccAcctaatccaatgcctcaaag	8	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	69727439	69727439	A	C	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	silent	c.3711	p.P1237	0.992	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	246	1	0.4	160	22	12.02	-	-	-	C	69727439	A	C	69727439	2	2	232	1	0	0	0	0	0	0	0	1	10432	146	6	5		5	NFAT5	16	69727439	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46267	69727439	20627314	2339	17865										
AARS	0	genome.wustl.edu	37	chr16	70296403	70296403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccctgcgcagagccatcAccgtagccactgtgttctca	8	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	70296403	70296403	A	C	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1517	p.V506G	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	37	0	0	28	10	26.32	-	-	-	C	70296403	A	C	70296403	3	2	232	1	0	0	0	0	1	0	0	0	19	159	6	5	1429	5	AARS	16	70296403	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	568964	70296403	20058350	2340	17866										
PMFBP1	0	genome.wustl.edu	37	chr16	72188315	72188315	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttactggacccaaattccAcctctgactcctcgaatgct	6	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	72188315	72188315	A	C	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.209	p.V70G	0.000	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	177	1	0.56	162	33	16.92	-	-	-	C	72188315	A	C	72188315	3	2	232	1	0	0	0	0	1	0	0	0	12208	159	6	5	2946	5	PMFBP1	16	72188315	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1891912	72188315	18166438	2341	17867										
ZFHX3	0	genome.wustl.edu	37	chr16	72828688	72828688	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctcttctcctcctgtcccActgtcgttttcgccagggct	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	72828688	72828688	A	C	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.7893	p.S2631R	0.586	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	268	2	0.74	159	18	10.11	-	-	-	C	72828688	A	C	72828688	3	2	232	1	0	0	0	0	1	0	0	0	17730	156	6	5	3226	5	ZFHX3	16	72828688	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	640373	72828688	17526065	2342	17868										
ZFHX3	0	genome.wustl.edu	37	chr16	72832472	72832472	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcagcagaagttttgaaaAcctggttgcaccccttcttc	10	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	72832472	72832472	A	C	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.4109	p.V1370G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	197	0	0	122	19	13.48	-	-	-	C	72832472	A	C	72832472	3	2	232	1	0	0	0	0	1	0	0	0	17730	43	2	5	7010	5	ZFHX3	16	72832472	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3784	72832472	17522281	2343	17869										
RFWD3	0	genome.wustl.edu	37	chr16	74662504	74662504	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggttccagccagcaccccAccatatggaaatgcagctga	9	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	74662504	74662504	A	C	SNP	RFWD3	ENST00000361070	human	ensembl	69_37n	-1	known	silent	c.1815	p.G605	1.000	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING	-	no_errors	RFWD3	HGNC	ENSG00000168411	243	0	0	221	28	11.24	-	-	-	C	74662504	A	C	74662504	2	2	232	1	0	0	0	0	0	0	0	1	13344	146	6	5		5	RFWD3	16	74662504	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1830032	74662504	15692249	2344	17870										
KARS	0	genome.wustl.edu	37	chr16	75665399	75665399	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgttgattcgccggaagggTggggtgaagtcaacatcgta	15	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	75665399	75665399	T	G	SNP	KARS	ENST00000319410	human	ensembl	69_37n	-1	known	silent	c.1251	p.P417	0.909	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Lys-tRNA-synth_II	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-synth_II	-	no_errors	KARS	HGNC	ENSG00000065427	78	0	0	74	14	15.91	-	-	-	G	75665399	T	G	75665399	2	3	232	1	0	0	0	0	0	0	0	1	8034	1683	59	5		5	KARS	16	75665399	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1002895	75665399	14689354	2345	17871										
MON1B	0	genome.wustl.edu	37	chr16	77228819	77228819	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgcctgctgctgcttggcAcccaacgtgaagccttccat	9	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	77228819	77228819	A	C	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	missense	c.1063	p.T355P	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	93	0	0	51	16	23.88	-	-	-	C	77228819	A	C	77228819	3	2	232	1	0	0	0	0	1	0	0	0	9771	159	6	5	1073	5	MON1B	16	77228819	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1563420	77228819	13125934	2346	17872										
ADAMTS18	0	genome.wustl.edu	37	chr16	77355034	77355034	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacttgcaagttgaattatcAcctttgcaaacgccacaagc	6	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	77355034	77355034	A	C	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.2229	p.G743	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	123	1	0.81	88	17	16.19	-	-	-	C	77355034	A	C	77355034	2	2	232	1	0	0	0	0	0	0	0	1	263	146	6	5		5	ADAMTS18	16	77355034	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	126215	77355034	12999719	2347	17873										
WWOX	0	genome.wustl.edu	37	chr16	78458843	78458843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaaagatggcctggagaccAcctttcaagtgaatcatctg	9	11	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	78458843	78458843	A	C	SNP	WWOX	ENST00000566780	human	ensembl	69_37n	1	known	missense	c.682	p.T228P	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_WW_Rsp5_WWP,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153	272	0	0	213	42	16.34	-	-	-	C	78458843	A	C	78458843	3	2	232	1	0	0	0	0	1	0	0	0	17511	159	6	5	770	5	WWOX	16	78458843	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1103809	78458843	11895910	2348	17874										
C16orf46	0	genome.wustl.edu	37	chr16	81095734	81095734	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctggagaagtccttccccAcccttggacctgcaaataaa	8	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	81095734	81095734	A	C	SNP	C16orf46	ENST00000299578	human	ensembl	69_37n	-1	known	missense	c.220	p.W74G	1.000	NULL	NULL	-	no_errors	C16orf46	HGNC	ENSG00000166455	103	1	0.96	112	28	20	-	-	-	C	81095734	A	C	81095734	3	2	232	1	0	0	0	0	1	0	0	0	1828	159	6	5	999	5	C16orf46	16	81095734	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2636891	81095734	9259019	2349	17875										
HSD17B2	0	genome.wustl.edu	37	chr16	82101888	82101888	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagctgaggaattgcgaagaAcctgctctccgcgcctctcg	12	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	82101888	82101888	A	C	SNP	HSD17B2	ENST00000199936	human	ensembl	69_37n	1	known	missense	c.379	p.T127P	0.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696	133	0	0	118	19	13.77	-	-	-	C	82101888	A	C	82101888	3	2	232	1	0	0	0	0	1	0	0	0	7435	43	2	5	385	5	HSD17B2	16	82101888	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1006154	82101888	8252865	2350	17876										
MLYCD	0	genome.wustl.edu	37	chr16	83948880	83948880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaccccgtggccaacttccAcctgcagaacggggcggtgc	13	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	83948880	83948880	A	C	SNP	MLYCD	ENST00000262430	human	ensembl	69_37n	1	known	missense	c.1268	p.H423P	1.000	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150	41	0	0	55	12	17.91	-	-	-	C	83948880	A	C	83948880	3	2	232	1	0	0	0	0	1	0	0	0	9709	159	6	5	1286	5	MLYCD	16	83948880	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1846992	83948880	6405873	2351	17877										
ATP2C2	0	genome.wustl.edu	37	chr16	84459364	84459364	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcatgctcattggctggTcgcaagggaaacaactcctg	10	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	84459364	84459364	T	G	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.943	p.S315A	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	189	1	0.52	114	30	20.69	-	-	-	G	84459364	T	G	84459364	3	3	232	1	0	0	0	0	1	0	0	0	1148	1667	58	5	985	5	ATP2C2	16	84459364	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	510484	84459364	5895389	2352	17878										
ZNF778	0	genome.wustl.edu	37	chr16	89293604	89293604	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tactggtcgcgtgcaagtccAccctggggaaaagccctgtg	13	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	89293604	89293604	A	C	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	missense	c.824	p.H275P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	113	1	0.85	66	19	22.09	-	-	-	C	89293604	A	C	89293604	3	2	232	1	0	0	0	0	1	0	0	0	18244	159	6	5	842	5	ZNF778	16	89293604	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4834240	89293604	1061149	2353	17879										
ANKRD11	0	genome.wustl.edu	37	chr16	89347944	89347944	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtctgcacctgatgctgggTgtagcttattttccgcggca	12	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	16	89347944	89347944	T	G	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.5006	p.H1669P	0.117	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	215	1	0.46	158	30	15.96	-	-	-	G	89347944	T	G	89347944	3	3	232	1	0	0	0	0	1	0	0	0	639	1696	59	5	3005	5	ANKRD11	16	89347944	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	54340	89347944	1006809	2354	17880										
VPS53	0	genome.wustl.edu	37	chr17	436129	436129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgcacttgaagaggtgggTgatgaatttgggaatgaagg	16	3	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	436129	436129	T	G	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	missense	c.2038	p.T680P	1.000	NULL	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	29	0	0	27	5	15.62	-	-	-	G	436129	T	G	436129	3	3	232	1	0	0	0	0	1	0	0	0	17312	1696	59	5	491	5	VPS53	17	436129	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		436129	80759081	2355	17881										
GLOD4	0	genome.wustl.edu	37	chr17	673713	673713	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaaagctgctgcatggtccAccccacccttgacgccctgt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	673713	673713	A	C	SNP	GLOD4	ENST00000301328	human	ensembl	69_37n	-1	known	missense	c.623	p.V208G	1.000	NULL	NULL	-	no_errors	GLOD4	HGNC	ENSG00000167699	892	8	0.89	572	127	18.14	-	-	-	C	673713	A	C	673713	3	2	232	1	0	0	0	0	1	0	0	0	6502	159	6	5	334	5	GLOD4	17	673713	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	237584	673713	80521497	2356	17882	196	2								
GLOD4	0	genome.wustl.edu	37	chr17	673718	673718	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgctgcatggtccaccccAcccttgacgccctgtagctc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	673718	673718	A	C	SNP	GLOD4	ENST00000575528	human	ensembl	69_37n	-1	known	missense	c.85	p.W29G	0.030	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLOD4	HGNC	ENSG00000167699	882	6	0.67	538	164	23.3	-	-	-	C	673718	A	C	673718	3	2	232	1	0	0	0	0	1	0	0	0	6502	146	6	5	339	5	GLOD4	17	673718	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5	673718	80521492	2357	17883	196	2								
ABR	0	genome.wustl.edu	37	chr17	1003974	1003974	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggcctttccctgcttccAcctgcacaaacgcaaagcac	6	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	1003974	1003974	A	C	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.248	p.V83G	1.000	superfamily_DH-domain	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	72	0	0	54	11	16.92	-	-	-	C	1003974	A	C	1003974	3	2	232	1	0	0	0	0	1	0	0	0	99	173	6	5	2415	5	ABR	17	1003974	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	330256	1003974	80191236	2358	17884										
PRPF8	0	genome.wustl.edu	37	chr17	1579939	1579939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtagtgggcagtgttggtccAccagtcagccttggccttca	13	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	1579939	1579939	A	C	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.2248	p.W750G	1.000	pfam_PROCN	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	208	2	0.95	257	40	13.38	-	-	-	C	1579939	A	C	1579939	3	2	232	1	0	0	0	0	1	0	0	0	12656	159	6	5	4871	5	PRPF8	17	1579939	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	575965	1579939	79615271	2359	17885										
SMG6	0	genome.wustl.edu	37	chr17	1989103	1989103	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccactgacacatactttccAcccttgaatgccagcagagg	8	14	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	1989103	1989103	A	C	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	silent	c.3450	p.G1150	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	200	2	0.99	192	42	17.87	-	-	-	C	1989103	A	C	1989103	2	2	232	1	0	0	0	0	0	0	0	1	14886	146	6	5		5	SMG6	17	1989103	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	409164	1989103	79206107	2360	17886										
SRR	0	genome.wustl.edu	37	chr17	2221269	2221269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaccatggccaggctctcAcctatgctgccaaattggaa	9	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	2221269	2221269	A	C	SNP	SRR	ENST00000344595	human	ensembl	69_37n	1	known	missense	c.274	p.T92P	0.957	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	SRR	HGNC	ENSG00000167720	210	1	0.47	193	31	13.78	-	-	-	C	2221269	A	C	2221269	3	2	232	1	0	0	0	0	1	0	0	0	15257	159	6	5	280	5	SRR	17	2221269	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	232166	2221269	78973941	2361	17887										
OR1D2	0	genome.wustl.edu	37	chr17	2995891	2995891	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagcttagggctcatggctgTggtgtagtggagggggcagc	20	6	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	2995891	2995891	T	G	SNP	OR1D2	ENST00000331459	human	ensembl	69_37n	-1	known	missense	c.400	p.T134P	0.040	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1D2	HGNC	ENSG00000184166	258	2	0.77	267	38	12.46	-	-	-	G	2995891	T	G	2995891	3	3	232	1	0	0	0	0	1	0	0	0	11026	1696	59	5	541	5	OR1D2	17	2995891	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	774622	2995891	78199319	2362	17888										
OR1A1	0	genome.wustl.edu	37	chr17	3119602	3119602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtcttccaggttccttccAccaagggcgtgctcaaggcc	10	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3119602	3119602	A	C	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	missense	c.688	p.T230P	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	344	2	0.57	395	55	12.11	-	-	-	C	3119602	A	C	3119602	3	2	232	1	0	0	0	0	1	0	0	0	11022	159	6	5	690	5	OR1A1	17	3119602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	123711	3119602	78075608	2363	17889										
OR1A1	0	genome.wustl.edu	37	chr17	3119642	3119642	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctccacctgtggttcccAcctcacggttgtctctttgt	7	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3119642	3119642	A	C	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	missense	c.728	p.H243P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	313	1	0.32	337	47	12.18	-	-	-	C	3119642	A	C	3119642	3	2	232	1	0	0	0	0	1	0	0	0	11022	159	6	5	730	5	OR1A1	17	3119642	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	40	3119642	78075568	2364	17890										
GSG2	0	genome.wustl.edu	37	chr17	3629294	3629294	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtgagcatcattgactacAccctgtcgcgcttggaacgg	11	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3629294	3629294	A	C	SNP	GSG2	ENST00000325418	human	ensembl	69_37n	1	known	missense	c.2065	p.T689P	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_DUF3635,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSG2	HGNC	ENSG00000177602	106	1	0.93	89	23	20.35	-	-	-	C	3629294	A	C	3629294	3	2	232	1	0	0	0	0	1	0	0	0	6873	159	6	5	2067	5	GSG2	17	3629294	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	509652	3629294	77565916	2365	17891										
ZZEF1	0	genome.wustl.edu	37	chr17	3926061	3926061	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccctttgctgcactttttcAccagcaacttcagcaaatcg	5	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3926061	3926061	A	C	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.7154	p.V2385G	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	134	0	0	170	20	10.47	-	-	-	C	3926061	A	C	3926061	3	2	232	1	0	0	0	0	1	0	0	0	18346	159	6	5	1779	5	ZZEF1	17	3926061	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	296767	3926061	77269149	2366	17892										
ZZEF1	0	genome.wustl.edu	37	chr17	3937349	3937349	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggctaaagagcaggtgggTggttttccagccatctggca	14	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3937349	3937349	T	G	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.6544	p.T2182P	0.991	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	193	0	0	213	49	18.56	-	-	-	G	3937349	T	G	3937349	3	3	232	1	0	0	0	0	1	0	0	0	18346	1696	59	5	2405	5	ZZEF1	17	3937349	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11288	3937349	77257861	2367	17893										
ZZEF1	0	genome.wustl.edu	37	chr17	3966100	3966100	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacaggaaaagtatgaaaggTggatggaagcagtggggctg	17	3	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3966100	3966100	T	G	SNP	ZZEF1	ENST00000571436	human	ensembl	69_37n	-1	known	missense	c.286	p.T96P	0.005	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZZEF1	HGNC	ENSG00000074755	43	0	0	28	13	31.71	-	-	-	G	3966100	T	G	3966100	3	3	232	1	0	0	0	0	1	0	0	0	18346	1683	59	5	4159	5	ZZEF1	17	3966100	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	28751	3966100	77229110	2368	17894										
ZZEF1	0	genome.wustl.edu	37	chr17	3989085	3989085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggcacagagtctccatccAccttgtccaccactgataaa	7	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	3989085	3989085	A	C	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.2525	p.V842G	0.001	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	289	1	0.34	226	37	14.07	-	-	-	C	3989085	A	C	3989085	3	2	232	1	0	0	0	0	1	0	0	0	18346	159	6	5	6520	5	ZZEF1	17	3989085	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	22985	3989085	77206125	2369	17895										
PELP1	0	genome.wustl.edu	37	chr17	4578144	4578144	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggagatgtcgctgagcaggTgggtgagcagggcctctcca	18	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	4578144	4578144	T	G	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.1814	p.H605P	1.000	pfam_Uncharacterised_NUC202	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	97	0	0	92	22	19.3	-	-	-	G	4578144	T	G	4578144	3	3	232	1	0	0	0	0	1	0	0	0	11798	1696	59	5	2034	5	PELP1	17	4578144	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	589059	4578144	76617066	2370	17896										
USP6	0	genome.wustl.edu	37	chr17	5071409	5071409	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggatctctggaggcttccAcccttcctggtatgttacgg	11	12	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	5071409	5071409	A	C	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	silent	c.3219	p.P1073	0.942	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	117	0	0	108	36	25	-	-	-	C	5071409	A	C	5071409	2	2	232	1	0	0	0	0	0	0	0	1	17183	146	6	5		5	USP6	17	5071409	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	493265	5071409	76123801	2371	17897										
NUP88	0	genome.wustl.edu	37	chr17	5291156	5291156	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatgtactgctctctgaacAcctgggtggctctgctgagg	13	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	5291156	5291156	A	C	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.1712	p.V571G	1.000	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	107	0	0	81	19	18.81	-	-	-	C	5291156	A	C	5291156	3	2	232	1	0	0	0	0	1	0	0	0	10844	159	6	5	537	5	NUP88	17	5291156	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	219747	5291156	75904054	2372	17898										
KIAA0753	0	genome.wustl.edu	37	chr17	6483151	6483151	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaagttcagcagccacagcAcccagagcttcatctaccag	8	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6483151	6483151	A	C	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	silent	c.2820	p.G940	0.031	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	260	0	0	226	32	12.36	-	-	-	C	6483151	A	C	6483151	2	2	232	1	0	0	0	0	0	0	0	1	8243	146	6	5		5	KIAA0753	17	6483151	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1191995	6483151	74712059	2373	17899										
KIAA0753	0	genome.wustl.edu	37	chr17	6511767	6511767	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctctggggctagttttcAcctttagccatgcagcactg	9	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6511767	6511767	A	C	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.1730	p.V577G	0.231	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	282	1	0.35	201	46	18.55	-	-	-	C	6511767	A	C	6511767	3	2	232	1	0	0	0	0	1	0	0	0	8243	159	6	5	1213	5	KIAA0753	17	6511767	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28616	6511767	74683443	2374	17900										
KIAA0753	0	genome.wustl.edu	37	chr17	6531850	6531850	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacatctcttctggctaggTggacagcatagctaagtctc	9	11	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6531850	6531850	T	G	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.305	p.H102P	1.000	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	177	0	0	117	18	13.14	-	-	-	G	6531850	T	G	6531850	3	3	232	1	0	0	0	0	1	0	0	0	8243	1696	59	5	2666	5	KIAA0753	17	6531850	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	20083	6531850	74663360	2375	17901										
TEKT1	0	genome.wustl.edu	37	chr17	6704180	6704180	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccaagcgcgtatgagccAccttggctggcccttcttgg	11	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6704180	6704180	A	C	SNP	TEKT1	ENST00000338694	human	ensembl	69_37n	-1	known	missense	c.935	p.V312G	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858	199	1	0.5	124	24	16.22	-	-	-	C	6704180	A	C	6704180	3	2	232	1	0	0	0	0	1	0	0	0	15847	159	6	5	329	5	TEKT1	17	6704180	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	172330	6704180	74491030	2376	17902										
ALOX12	0	genome.wustl.edu	37	chr17	6903731	6903731	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatccgaggagagaagcaatAcctggctgcccccctcgtta	11	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6903731	6903731	A	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.884	p.Y295S	1.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	361	2	0.55	302	35	10.26	-	-	-	C	6903731	A	C	6903731	3	2	232	1	0	0	0	0	1	0	0	0	536	391	14	5	910	5	ALOX12	17	6903731	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	199551	6903731	74291479	2377	17903										
ALOX12	0	genome.wustl.edu	37	chr17	6904980	6904980	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcctgccctcagaccccccActtgcctggctcctggcaaa	7	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6904980	6904980	A	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	silent	c.1011	p.P337	0.862	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	466	4	0.85	299	35	10.42	-	-	-	C	6904980	A	C	6904980	2	2	232	1	0	0	0	0	0	0	0	1	536	146	6	5		5	ALOX12	17	6904980	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1249	6904980	74290230	2378	17904										
ALOX12	0	genome.wustl.edu	37	chr17	6908615	6908615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctacaccatggaaatcaacAcccgggcccggacccaactc	8	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6908615	6908615	A	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.1201	p.T401P	0.842	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	457	4	0.86	297	46	13.41	-	-	-	C	6908615	A	C	6908615	3	2	232	1	0	0	0	0	1	0	0	0	536	159	6	5	1235	5	ALOX12	17	6908615	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3635	6908615	74286595	2379	17905										
SLC16A13	0	genome.wustl.edu	37	chr17	6941834	6941834	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacttcattccctacctccAcctggtggcccatctccagg	6	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	6941834	6941834	A	C	SNP	SLC16A13	ENST00000308027	human	ensembl	69_37n	1	known	missense	c.707	p.H236P	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	88	0	0	50	16	24.24	-	-	-	C	6941834	A	C	6941834	3	2	232	1	0	0	0	0	1	0	0	0	14495	159	6	5	717	5	SLC16A13	17	6941834	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	33219	6941834	74253376	2380	17906										
ASGR2	0	genome.wustl.edu	37	chr17	7010437	7010437	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcagctgccttggtgctccAcccagttgacggggcagcag	14	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7010437	7010437	A	C	SNP	ASGR2	ENST00000355035	human	ensembl	69_37n	-1	known	missense	c.545	p.V182G	0.052	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR2	HGNC	ENSG00000161944	173	1	0.57	159	30	15.87	-	-	-	C	7010437	A	C	7010437	3	2	232	1	0	0	0	0	1	0	0	0	1044	159	6	5	402	5	ASGR2	17	7010437	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	68603	7010437	74184773	2381	17907										
SLC2A4	0	genome.wustl.edu	37	chr17	7189808	7189808	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctgggcttcttcatcttcAccttcttaagagtacctgaa	7	11	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7189808	7189808	A	C	SNP	SLC2A4	ENST00000317370	human	ensembl	69_37n	1	known	missense	c.1390	p.T464P	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_4,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A4	HGNC	ENSG00000181856	384	3	0.77	140	21	12.88	-	-	-	C	7189808	A	C	7189808	3	2	232	1	0	0	0	0	1	0	0	0	14635	159	6	5	1432	5	SLC2A4	17	7189808	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	179371	7189808	74005402	2382	17908										
TMEM95	0	genome.wustl.edu	37	chr17	7259966	7259966	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgtgaagacgctgaaaaccTcccagcctccagctctaagg	9	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7259966	7259966	T	C	SNP	TMEM95	ENST00000389982	human	ensembl	69_37n	1	known	missense	c.538	p.S180P	0.000	NULL	NULL	-	no_errors	TMEM95	HGNC	ENSG00000182896	100	1	0.99	60	20	25	-	-	-	C	7259966	T	C	7259966	3	2	232	1	0	0	0	0	1	0	0	0	16318	1566	54	5		5	TMEM95	17	7259966	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	70158	7259966	73935244	2383	17909										
C17orf61	0	genome.wustl.edu	37	chr17	7306423	7306423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagcccaagagtagcagggTccctcccgcaggggccaaag	13	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7306423	7306423	T	G	SNP	C17orf61	ENST00000302422	human	ensembl	69_37n	-1	known	missense	c.304	p.T102P	0.990	pfam_DUF423	pfam_DUF423	-	no_errors	C17orf61	HGNC	ENSG00000205544	86	0	0	44	13	22.03	-	-	-	G	7306423	T	G	7306423	3	3	232	1	0	0	0	0	1	0	0	0	1884	1667	58	5	41	5	C17orf61	17	7306423	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	46457	7306423	73888787	2384	17910										
POLR2A	0	genome.wustl.edu	37	chr17	7416965	7416965	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagctactctccaacatcAcccagctattccccgacctc	3	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7416965	7416965	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.5382	p.S1794	0.511	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	939	7	0.74	547	91	14.15	-	-	-	C	7416965	A	C	7416965	2	2	232	1	0	0	0	0	0	0	0	1	12288	146	6	5		5	POLR2A	17	7416965	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	110542	7416965	73778245	2385	17911			13	43		6	5	137	N	A	1.13733e-09
POLR2A	0	genome.wustl.edu	37	chr17	7416986	7416986	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagctattccccgacctcAccaagttactccccttccag	4	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7416986	7416986	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.5403	p.S1801	0.981	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	886	5	0.56	522	67	11.34	-	-	-	C	7416986	A	C	7416986	2	2	232	1	0	0	0	0	0	0	0	1	12288	146	6	5		5	POLR2A	17	7416986	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21	7416986	73778224	2386	17912			13	43		6	5	137	N	A	1.13733e-09
POLR2A	0	genome.wustl.edu	37	chr17	7417038	7417038	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccacagtctccaacctatAccccaagctcacccagctac	3	20	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7417038	7417038	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	missense	c.5455	p.T1819P	1.000	NULL	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	680	5	0.72	370	67	15.23	-	-	-	C	7417038	A	C	7417038	3	2	232	1	0	0	0	0	1	0	0	0	12288	391	14	5	5569	5	POLR2A	17	7417038	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	52	7417038	73778172	2387	17913			13	43		6	5	137	N	A	1.13733e-09
POLR2A	0	genome.wustl.edu	37	chr17	7417049	7417049	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacctataccccaagctcAcccagctacagccccagctc	4	21	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7417049	7417049	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.5466	p.S1822	0.053	NULL	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	622	6	0.95	325	93	22.2	-	-	-	C	7417049	A	C	7417049	2	2	232	1	0	0	0	0	0	0	0	1	12288	146	6	5		5	POLR2A	17	7417049	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11	7417049	73778161	2388	17914			13	43		6	5	137	N	A	1.13733e-09
POLR2A	0	genome.wustl.edu	37	chr17	7417091	7417091	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagctacagcccagcctcAcccaagtacaccccaaccag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7417091	7417091	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.5508	p.S1836	0.439	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	529	3	0.56	277	56	16.72	-	-	-	C	7417091	A	C	7417091	2	2	232	1	0	0	0	0	0	0	0	1	12288	146	6	5		5	POLR2A	17	7417091	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	42	7417091	73778119	2389	17915	197	2	13	43		6	5	137	N	A	1.13733e-09
POLR2A	0	genome.wustl.edu	37	chr17	7417101	7417101	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccagcctcacccaagtacAccccaaccagtccttcttac							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7417101	7417101	A	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	missense	c.5518	p.T1840P	0.998	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	501	4	0.79	260	54	17.03	-	-	-	C	7417101	A	C	7417101	3	2	232	1	0	0	0	0	1	0	0	0	12288	159	6	5	5632	5	POLR2A	17	7417101	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10	7417101	73778109	2390	17916	197	2	13	43		6	5	137	N	A	1.13733e-09
EIF4A1	0	genome.wustl.edu	37	chr17	7480972	7480972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcaacacccggaggaaggTggactggctcaccgagaaga	13	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7480972	7480972	T	G	SNP	EIF4A1	ENST00000293831	human	ensembl	69_37n	1	known	missense	c.854	p.V285G	0.997	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A1	HGNC	ENSG00000161960	219	1	0.45	110	20	15.38	-	-	-	G	7480972	T	G	7480972	3	3	232	1	0	0	0	0	1	0	0	0	5061	1696	59	5	884	5	EIF4A1	17	7480972	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	63871	7480972	73714238	2391	17917										
TP53	0	genome.wustl.edu	37	chr17	7579429	7579429	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggggccaggagggggctggTgcaggggccgccggtgtagg	24	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7579429	7579429	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	silent	c.258	p.A86	0.586	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	143	0	0	136	31	18.45	-	-	-	G	7579429	T	G	7579429	2	3	232	1	0	0	0	0	0	0	0	1	16477	1683	59	5		5	TP53	17	7579429	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	98457	7579429	73615781	2392	17918										
DNAH2	0	genome.wustl.edu	37	chr17	7663178	7663178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggcaaccacctcttttccAccatctctgtcttctgccac	4	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7663178	7663178	A	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.2707	p.T903P	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	266	0	0	172	44	20.37	-	-	-	C	7663178	A	C	7663178	3	2	232	1	0	0	0	0	1	0	0	0	4638	159	6	5	2769	5	DNAH2	17	7663178	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83749	7663178	73532032	2393	17919										
DNAH2	0	genome.wustl.edu	37	chr17	7720735	7720735	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaaatctggatcgggaaggTgagatgggactcaggcatga	15	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7720735	7720735	T	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	splice_site	c.10020+2	e64+2	1.000	-	-	-	no_errors	DNAH2	HGNC	ENSG00000183914	245	0	0	154	28	15.3	-	-	-	G	7720735	T	G	7720735	5	3	232	1	0	0	0	0	0	0	1	0	4638	1710	59	5	10276	5	DNAH2	17	7720735	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	57557	7720735	73474475	2394	17920										
DNAH2	0	genome.wustl.edu	37	chr17	7727153	7727153	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactcacctcatccccaggTgagtgggaaaatgcctgcaa	10	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7727153	7727153	T	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.11331	p.G3777	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	107	0	0	129	21	13.91	-	-	-	G	7727153	T	G	7727153	2	3	232	1	0	0	0	0	0	0	0	1	4638	1710	59	5		5	DNAH2	17	7727153	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	6418	7727153	73468057	2395	17921										
CHD3	0	genome.wustl.edu	37	chr17	7809929	7809929	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggggcagacggctctgaaAcctttgccgatggggtccct	14	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	7809929	7809929	A	C	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.4417	p.T1473P	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	301	1	0.33	166	22	11.7	-	-	-	C	7809929	A	C	7809929	3	2	232	1	0	0	0	0	1	0	0	0	3355	43	2	5	4812	5	CHD3	17	7809929	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	82776	7809929	73385281	2396	17922										
PFAS	0	genome.wustl.edu	37	chr17	8158845	8158845	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaccccccgtcagctgaggTggaagccattgctctggcta	11	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	8158845	8158845	T	G	SNP	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	missense	c.410	p.V137G	0.613	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	36	0	0	32	7	17.95	-	-	-	G	8158845	T	G	8158845	3	3	232	1	0	0	0	0	1	0	0	0	11828	1696	59	5	424	5	PFAS	17	8158845	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	348916	8158845	73036365	2397	17923										
SLC25A35	0	genome.wustl.edu	37	chr17	8194260	8194260	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccactcatcatggcagccAccagcgccaacttccagctc	7	18	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	8194260	8194260	A	C	SNP	SLC25A35	ENST00000577745	human	ensembl	69_37n	-1	known	missense	c.629	p.V210G	0.001	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A35	HGNC	ENSG00000125434	112	0	0	63	23	26.44	-	-	-	C	8194260	A	C	8194260	3	2	232	1	0	0	0	0	1	0	0	0	14588	159	6	5	270	5	SLC25A35	17	8194260	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	35415	8194260	73000950	2398	17924										
ODF4	0	genome.wustl.edu	37	chr17	8248663	8248663	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcctcctgtctcctagtcAccttcatcttctccaccctc	3	20	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	8248663	8248663	A	C	SNP	ODF4	ENST00000328248	human	ensembl	69_37n	1	known	missense	c.457	p.T153P	0.000	NULL	NULL	-	no_errors	ODF4	HGNC	ENSG00000184650	168	1	0.59	106	20	15.87	-	-	-	C	8248663	A	C	8248663	3	2	232	1	0	0	0	0	1	0	0	0	10906	159	6	5	463	5	ODF4	17	8248663	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	54403	8248663	72946547	2399	17925										
USP43	0	genome.wustl.edu	37	chr17	9578277	9578277	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttcctgtgtgtgtccctAcctatccccttgcgccagac	7	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	9578277	9578277	A	C	SNP	USP43	ENST00000285199	human	ensembl	69_37n	1	known	silent	c.810	p.L270	0.192	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	439	1	0.23	287	41	12.46	-	-	-	C	9578277	A	C	9578277	2	2	232	1	0	0	0	0	0	0	0	1	17171	378	14	5		5	USP43	17	9578277	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1329614	9578277	71616933	2400	17926										
MYH13	0	genome.wustl.edu	37	chr17	10248920	10248920	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggctttggccagagcacccAccgaattggtcaccttgaaa	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	10248920	10248920	A	C	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.1277	p.V426G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	207	0	0	202	30	12.82	-	-	-	C	10248920	A	C	10248920	3	2	232	1	0	0	0	0	1	0	0	0	10104	159	6	5	4651	5	MYH13	17	10248920	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	670643	10248920	70946290	2401	17927										
MYH4	0	genome.wustl.edu	37	chr17	10368808	10368808	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatggagaagatatggggTggggcctcctggcgcttttt	17	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	10368808	10368808	T	G	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.456	p.P152	0.738	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	203	0	0	206	32	13.39	-	-	-	G	10368808	T	G	10368808	2	3	232	1	0	0	0	0	0	0	0	1	10109	1683	59	5		5	MYH4	17	10368808	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	119888	10368808	70826402	2402	17928										
MYH1	0	genome.wustl.edu	37	chr17	10398333	10398333	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacgatgctgcaggtccttcAccgtctgttccaggttcttc	10	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	10398333	10398333	A	C	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.5381	p.V1794G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	294	2	0.68	157	18	10.29	-	-	-	C	10398333	A	C	10398333	3	2	232	1	0	0	0	0	1	0	0	0	10101	159	6	5	454	5	MYH1	17	10398333	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	29525	10398333	70796877	2403	17929										
DNAH9	0	genome.wustl.edu	37	chr17	11572997	11572997	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggctggaacccatcaaggTgtttgacggctggatgaaaa	13	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	11572997	11572997	T	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.3239	p.V1080G	0.098	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	292	0	0	185	31	14.22	-	-	-	G	11572997	T	G	11572997	3	3	232	1	0	0	0	0	1	0	0	0	4643	1696	59	5	3305	5	DNAH9	17	11572997	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1174664	11572997	69622213	2404	17930										
DNAH9	0	genome.wustl.edu	37	chr17	11687788	11687788	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaccagaaaattgctaccAccttcctacccacaggaatc	4	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	11687788	11687788	A	C	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.7993	p.T2665P	0.997	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	268	2	0.74	154	46	23	-	-	-	C	11687788	A	C	11687788	3	2	232	1	0	0	0	0	1	0	0	0	4643	159	6	5	8155	5	DNAH9	17	11687788	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	114791	11687788	69507422	2405	17931										
ZNF18	0	genome.wustl.edu	37	chr17	11894407	11894407	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacttcaagatggggctccActtcccccacttggcagctt	8	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	11894407	11894407	A	C	SNP	ZNF18	ENST00000322748	human	ensembl	69_37n	-1	known	missense	c.461	p.V154G	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957	380	2	0.52	324	39	10.71	-	-	-	C	11894407	A	C	11894407	3	2	232	1	0	0	0	0	1	0	0	0	17843	159	6	5	1208	5	ZNF18	17	11894407	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	206619	11894407	69300803	2406	17932										
MYOCD	0	genome.wustl.edu	37	chr17	12666869	12666869	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggctttagcgccctcaccAccagcagccccagcatcttc	7	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	12666869	12666869	A	C	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.2869	p.T957P	0.446	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	119	0	0	128	16	11.11	-	-	-	C	12666869	A	C	12666869	3	2	232	1	0	0	0	0	1	0	0	0	10159	159	6	5	2935	5	MYOCD	17	12666869	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	772462	12666869	68528341	2407	17933										
NCOR1	0	genome.wustl.edu	37	chr17	15964978	15964978	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgaacagatctcttctccAcctccagggttttctgctct	6	14	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	15964978	15964978	A	C	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5618	p.V1873G	0.995	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	330	0	0	378	74	16.34	-	-	-	C	15964978	A	C	15964978	3	2	232	1	0	0	0	0	1	0	0	0	10307	159	6	5	1744	5	NCOR1	17	15964978	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3298109	15964978	65230232	2408	17934										
TRPV2	0	genome.wustl.edu	37	chr17	16336927	16336927	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatggagaatggctattggTggtgcaggaagaagcagcgg	18	4	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	16336927	16336927	T	G	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	missense	c.2029	p.W677G	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	60	0	0	54	13	19.4	-	-	-	G	16336927	T	G	16336927	3	3	232	1	0	0	0	0	1	0	0	0	16692	1696	59	5	2075	5	TRPV2	17	16336927	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	371949	16336927	64858283	2409	17935										
NOS2	0	genome.wustl.edu	37	chr17	26106011	26106011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgggaactccaggccgcccAcctcaagcagcatgttggcc	11	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	26106011	26106011	A	C	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.1076	p.V359G	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	109	1	0.9	114	27	19.15	-	-	-	C	26106011	A	C	26106011	3	2	232	1	0	0	0	0	1	0	0	0	10615	159	6	5	2457	5	NOS2	17	26106011	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9769084	26106011	55089199	2410	17936										
NOS2	0	genome.wustl.edu	37	chr17	26110032	26110032	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgcgccaggcctgcttggTggcgaagatgagctcatctc	13	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	26110032	26110032	T	G	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.568	p.T190P	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	84	0	0	78	18	18.56	-	-	-	G	26110032	T	G	26110032	3	3	232	1	0	0	0	0	1	0	0	0	10615	1696	59	5	2981	5	NOS2	17	26110032	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4021	26110032	55085178	2411	17937										
NOS2	0	genome.wustl.edu	37	chr17	26110103	26110103	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcctttgttaccgcttccAccctggccagatgttcctct	6	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	26110103	26110103	A	C	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.497	p.V166G	0.999	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	131	1	0.75	109	25	18.66	-	-	-	C	26110103	A	C	26110103	3	2	232	1	0	0	0	0	1	0	0	0	10615	159	6	5	3052	5	NOS2	17	26110103	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	71	26110103	55085107	2412	17938										
SLC13A2	0	genome.wustl.edu	37	chr17	26817463	26817463	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgccgctcagccatgtctccAcctgccaggttgccgtcgag	11	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	26817463	26817463	A	C	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	missense	c.370	p.T124P	0.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	101	0	0	52	16	23.53	-	-	-	C	26817463	A	C	26817463	3	2	232	1	0	0	0	0	1	0	0	0	14481	159	6	5	380	5	SLC13A2	17	26817463	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	707360	26817463	54377747	2413	17939										
KIAA0100	0	genome.wustl.edu	37	chr17	26943634	26943634	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctccaccataaaagttctcAccagtagtcaccagtttgga	7	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	26943634	26943634	A	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	splice_site	c.6157+2	e35+2	1.000	-	-	-	no_errors	KIAA0100	HGNC	ENSG00000007202	255	0	0	221	28	11.24	-	-	-	C	26943634	A	C	26943634	5	2	232	1	0	0	0	0	0	0	1	0	8206	173	6	5	568	5	KIAA0100	17	26943634	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	126171	26943634	54251576	2414	17940										
SUPT6H	0	genome.wustl.edu	37	chr17	27023950	27023950	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggagaccatggaccagggTgatgtgattatccgaccaag	13	8	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	27023950	27023950	T	G	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	silent	c.4059	p.G1353	0.998	pfam_SH2,smart_SH2,pirsf_TF_Spt6,pfscan_SH2	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	263	0	0	201	37	15.48	-	-	-	G	27023950	T	G	27023950	2	3	232	1	0	0	0	0	0	0	0	1	15491	1683	59	5		5	SUPT6H	17	27023950	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	80316	27023950	54171260	2415	17941										
MYO18A	0	genome.wustl.edu	37	chr17	27401710	27401710	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcgggtgggggagaccggTgccccaccacttcctgggag	17	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	27401710	27401710	T	G	SNP	MYO18A	ENST00000529578	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MYO18A	HGNC	ENSG00000196535	28	0	0	34	14	28.57	-	-	-	G	27401710	T	G	27401710	1	3	232	0	1	0	0	0	0	0	0	0	10137	1711	59	5		5	MYO18A	17	27401710	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	377760	27401710	53793500	2416	17942										
MYO1D	0	genome.wustl.edu	37	chr17	31039078	31039078	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggtaaacaatgttcggggTgttcgaatgaaaattttggt	12	3	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	31039078	31039078	T	G	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	silent	c.2049	p.T683	0.996	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	486	1	0.2	397	58	12.66	-	-	-	G	31039078	T	G	31039078	2	3	232	1	0	0	0	0	0	0	0	1	10143	1683	59	5		5	MYO1D	17	31039078	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3637368	31039078	50156132	2417	17943										
SLFN11	0	genome.wustl.edu	37	chr17	33679577	33679577	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcatcactgagctgcaccAcccttttcttcctcattgct	5	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	33679577	33679577	A	C	SNP	SLFN11	ENST00000308377	human	ensembl	69_37n	-1	known	missense	c.2504	p.V835G	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN11	HGNC	ENSG00000172716	238	1	0.42	211	48	18.46	-	-	-	C	33679577	A	C	33679577	3	2	232	1	0	0	0	0	1	0	0	0	14822	159	6	5	205	5	SLFN11	17	33679577	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2640499	33679577	47515633	2418	17944										
SLFN13	0	genome.wustl.edu	37	chr17	33767804	33767804	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcatcactgagctgcaccAccattttcttcctcattgct	5	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	33767804	33767804	A	C	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	missense	c.2504	p.V835G	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	257	0	0	232	30	11.41	-	-	-	C	33767804	A	C	33767804	3	2	232	1	0	0	0	0	1	0	0	0	14825	159	6	5	193	5	SLFN13	17	33767804	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	88227	33767804	47427406	2419	17945										
MYO19	0	genome.wustl.edu	37	chr17	34883918	34883918	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctctagtgtcacaggattcAccctggtgaggtcatccagt	10	11	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	34883918	34883918	A	C	SNP	MYO19	ENST00000431794	human	ensembl	69_37n	-1	known	missense	c.128	p.V43G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO19	HGNC	ENSG00000141140	23	0	0	27	8	22.86	-	-	-	C	34883918	A	C	34883918	3	2	232	1	0	0	0	0	1	0	0	0	10139	159	6	5	2936	5	MYO19	17	34883918	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1116114	34883918	46311292	2420	17946										
DHRS11	0	genome.wustl.edu	37	chr17	34954593	34954593	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccctccctggcctgcaggTgaacgtgctggccctcagca	12	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	34954593	34954593	T	G	SNP	DHRS11	ENST00000251312	human	ensembl	69_37n	1	known	missense	c.359	p.V120G	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	DHRS11	HGNC	ENSG00000108272	75	0	0	69	13	15.66	-	-	-	G	34954593	T	G	34954593	3	3	232	1	0	0	0	0	1	0	0	0	4523	1710	59	5	369	5	DHRS11	17	34954593	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	70675	34954593	46240617	2421	17947										
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccagtggccatcaaagtgtTgagggaaaacacatccccca	9	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	38	0	0	26	19	42.22	-	-	-	C	37880220	T	C	37880220	3	2	232	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2925627	37880220	43314990	2422	17948										
THRA	0	genome.wustl.edu	37	chr17	38240887	38240887	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctagatgactcgaagcgggTggccaagcgtaagctgattg	14	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38240887	38240887	T	G	SNP	THRA	ENST00000264637	human	ensembl	69_37n	1	known	missense	c.395	p.V132G	1.000	prints_ThyrH_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351	144	0	0	208	32	13.33	-	-	-	G	38240887	T	G	38240887	3	3	232	1	0	0	0	0	1	0	0	0	15968	1696	59	5	413	5	THRA	17	38240887	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	360667	38240887	42954323	2423	17949										
TNS4	0	genome.wustl.edu	37	chr17	38634869	38634869	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cataccacagaagcggagggTggtgagtgggtaatggcgcc	17	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38634869	38634869	T	G	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.1942	p.T648P	0.194	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	71	0	0	72	15	17.24	-	-	-	G	38634869	T	G	38634869	3	3	232	1	0	0	0	0	1	0	0	0	16440	1696	59	5	217	5	TNS4	17	38634869	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	393982	38634869	42560341	2424	17950										
KRT24	0	genome.wustl.edu	37	chr17	38859682	38859682	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgccaaagctagaacccccAccaaatcctgtcccagagcc	6	19	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38859682	38859682	A	C	SNP	KRT24	ENST00000264651	human	ensembl	69_37n	-1	known	silent	c.264	p.G88	0.002	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916	242	2	0.82	336	88	20.75	-	-	-	C	38859682	A	C	38859682	2	2	232	1	0	0	0	0	0	0	0	1	8514	146	6	5		5	KRT24	17	38859682	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	224813	38859682	42335528	2425	17951										
KRT28	0	genome.wustl.edu	37	chr17	38955996	38955996	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaacactgcccaagcccccTcccaaggcacaggaaaattc	8	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38955996	38955996	T	C	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	silent	c.150	p.G50	0.991	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	99	1	1	163	29	15.1	-	-	-	C	38955996	T	C	38955996	2	2	232	1	0	0	0	0	0	0	0	1	8518	1538	54	5		5	KRT28	17	38955996	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	96314	38955996	42239214	2426	17952										
KRT28	0	genome.wustl.edu	37	chr17	38956017	38956017	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaaggcacaggaaaattcActtccagcaacagagccacc	7	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38956017	38956017	A	C	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.129	p.S43R	0.998	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	101	0	0	161	23	12.5	-	-	-	C	38956017	A	C	38956017	3	2	232	1	0	0	0	0	1	0	0	0	8518	156	6	5	1297	5	KRT28	17	38956017	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21	38956017	42239193	2427	17953										
KRT10	0	genome.wustl.edu	37	chr17	38978706	38978706	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccctgagctaaatcctccAccaagggagcctttgctgct	8	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	38978706	38978706	A	C	SNP	KRT10	ENST00000269576	human	ensembl	69_37n	-1	known	silent	c.132	p.G44	0.996	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	144	0	0	104	24	18.46	-	-	-	C	38978706	A	C	38978706	2	2	232	1	0	0	0	0	0	0	0	1	8501	146	6	5		5	KRT10	17	38978706	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	22689	38978706	42216504	2428	17954										
KRTAP3-3	0	genome.wustl.edu	37	chr17	39150183	39150183	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacgcagggctgaggaatgTggcagggtgggggacagttg	21	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	39150183	39150183	T	G	SNP	KRTAP3-3	ENST00000391586	human	ensembl	69_37n	-1	known	missense	c.167	p.H56P	1.000	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-3	HGNC	ENSG00000212899	113	0	0	182	21	10.34	-	-	-	G	39150183	T	G	39150183	3	3	232	1	0	0	0	0	1	0	0	0	8601	1696	59	5	133	5	KRTAP3-3	17	39150183	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	171477	39150183	42045027	2429	17955										
KRTAP9-4	0	genome.wustl.edu	37	chr17	39406399	39406399	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaccacttgcttccagcccAcctgtgtgtccagctgctgt	9	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	39406399	39406399	A	C	SNP	KRTAP9-4	ENST00000334109	human	ensembl	69_37n	1	known	missense	c.427	p.T143P	0.001	NULL	NULL	-	no_errors	KRTAP9-4	HGNC	ENSG00000241595	447	2	0.44	465	90	16.16	-	-	-	C	39406399	A	C	39406399	3	2	232	1	0	0	0	0	1	0	0	0	8629	159	6	5	429	5	KRTAP9-4	17	39406399	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	256216	39406399	41788811	2430	17956										
KRT13	0	genome.wustl.edu	37	chr17	39661749	39661749	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcccagctggcaagagccAcccccgaaaccacctccata	6	20	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	39661749	39661749	A	C	SNP	KRT13	ENST00000246635	human	ensembl	69_37n	-1	known	silent	c.54	p.G18	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	56	0	0	42	22	34.38	-	-	-	C	39661749	A	C	39661749	2	2	232	1	0	0	0	0	0	0	0	1	8503	146	6	5		5	KRT13	17	39661749	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	255350	39661749	41533461	2431	17957										
KRT16	0	genome.wustl.edu	37	chr17	39768585	39768585	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattgaggttctgcatggtcAccttctcactgcccaccaga	8	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	39768585	39768585	A	C	SNP	KRT16	ENST00000301653	human	ensembl	69_37n	-1	known	missense	c.356	p.V119G	0.044	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832	215	2	0.92	144	21	12.73	-	-	-	C	39768585	A	C	39768585	3	2	232	1	0	0	0	0	1	0	0	0	8506	159	6	5	1097	5	KRT16	17	39768585	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	106836	39768585	41426625	2432	17958										
ACLY	0	genome.wustl.edu	37	chr17	40062867	40062867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcagcttcaggcttgccccActtttggcatcgaggtctgc	11	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	40062867	40062867	A	C	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.780	p.S260R	1.000	superfamily_Succinyl-CoA_synth-like,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	154	0	0	222	26	10.28	-	-	-	C	40062867	A	C	40062867	3	2	232	1	0	0	0	0	1	0	0	0	143	156	6	5	2613	5	ACLY	17	40062867	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	294282	40062867	41132343	2433	17959										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40673251	40673251	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaccagctcattcgtgtcAccctgtctgtgagtcattta	9	12	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	40673251	40673251	A	C	SNP	ATP6V0A1	ENST00000587299	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	85	0	0	56	23	29.11	-	-	-	C	40673251	A	C	40673251	1	2	232	0	1	0	0	0	0	0	0	0	1172	174	6	5		5	ATP6V0A1	17	40673251	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	610384	40673251	40521959	2434	17960										
CNTNAP1	0	genome.wustl.edu	37	chr17	40838091	40838091	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggccgcgatgtaaatttcAccctggacggctatgtgcag	12	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	40838091	40838091	A	C	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.832	p.T278P	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	95	0	0	62	20	24.1	-	-	-	C	40838091	A	C	40838091	3	2	232	1	0	0	0	0	1	0	0	0	3676	159	6	5	854	5	CNTNAP1	17	40838091	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	164840	40838091	40357119	2435	17961										
CNTNAP1	0	genome.wustl.edu	37	chr17	40840972	40840972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgcatggagctgctcaaggTggatggtcaactggtcaacc	13	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	40840972	40840972	T	G	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.1535	p.V512G	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	68	0	0	70	11	13.41	-	-	-	G	40840972	T	G	40840972	3	3	232	1	0	0	0	0	1	0	0	0	3676	1696	59	5	1573	5	CNTNAP1	17	40840972	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2881	40840972	40354238	2436	17962										
EZH1	0	genome.wustl.edu	37	chr17	40864451	40864451	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccactacgcagagttgaggTggggctggactagccttctg	14	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	40864451	40864451	T	G	SNP	EZH1	ENST00000428826	human	ensembl	69_37n	-1	known	silent	c.1257	p.P419	0.184	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799	107	0	0	149	23	13.37	-	-	-	G	40864451	T	G	40864451	2	3	232	1	0	0	0	0	0	0	0	1	5370	1683	59	5		5	EZH1	17	40864451	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	23479	40864451	40330759	2437	17963										
AOC2	0	genome.wustl.edu	37	chr17	41002313	41002313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctgtggcctgcctccccgAcctggcagcctgtgtcccgg	12	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41002313	41002313	A	C	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.2219	p.D740A	0.078	superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	238	0	0	166	25	12.95	-	-	-	C	41002313	A	C	41002313	3	2	232	1	0	0	0	0	1	0	0	0	728	275	10	5	2233	5	AOC2	17	41002313	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	137862	41002313	40192897	2438	17964										
AOC3	0	genome.wustl.edu	37	chr17	41004759	41004759	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggtcgtcagatctatgtccAccttgctcaactatgactat	7	11	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41004759	41004759	A	C	SNP	AOC3	ENST00000308423	human	ensembl	69_37n	1	known	missense	c.1399	p.T467P	0.981	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471	82	0	0	47	9	16.07	-	-	-	C	41004759	A	C	41004759	3	2	232	1	0	0	0	0	1	0	0	0	729	159	6	5	1401	5	AOC3	17	41004759	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2446	41004759	40190451	2439	17965										
IFI35	0	genome.wustl.edu	37	chr17	41165193	41165193	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgcgggctctgctctgatcAcctttgatgaccccaaaggt	10	12	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41165193	41165193	A	C	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	missense	c.250	p.T84P	0.878	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	105	1	0.94	98	25	20.33	-	-	-	C	41165193	A	C	41165193	3	2	232	1	0	0	0	0	1	0	0	0	7570	159	6	5	260	5	IFI35	17	41165193	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	160434	41165193	40030017	2440	17966										
VAT1	0	genome.wustl.edu	37	chr17	41168160	41168160	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgtttcatggcatcagccAcctggggaggaaggaaagat	13	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41168160	41168160	A	C	SNP	VAT1	ENST00000355653	human	ensembl	69_37n	-1	known	missense	c.1100	p.V367G	1.000	smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1	HGNC	ENSG00000108828	137	0	0	157	30	16.04	-	-	-	C	41168160	A	C	41168160	3	2	232	1	0	0	0	0	1	0	0	0	17226	173	6	5	85	5	VAT1	17	41168160	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2967	41168160	40027050	2441	17967										
TMEM106A	0	genome.wustl.edu	37	chr17	41368538	41368538	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgaccctcgaggttctgcAcctgtccctcgtggtggggc	14	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41368538	41368538	A	C	SNP	TMEM106A	ENST00000331615	human	ensembl	69_37n	1	known	missense	c.500	p.H167P	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988	334	3	0.89	282	46	13.98	-	-	-	C	41368538	A	C	41368538	3	2	232	1	0	0	0	0	1	0	0	0	16115	159	6	5	514	5	TMEM106A	17	41368538	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	200378	41368538	39826672	2442	17968										
DHX8	0	genome.wustl.edu	37	chr17	41570820	41570820	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctctccctcaggaagcggTgggaaggcctggtgcacatc	15	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	41570820	41570820	T	G	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	missense	c.871	p.W291G	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	108	1	0.92	114	40	25.81	-	-	-	G	41570820	T	G	41570820	3	3	232	1	0	0	0	0	1	0	0	0	4551	1696	59	5	897	5	DHX8	17	41570820	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	202282	41570820	39624390	2443	17969										
GFAP	0	genome.wustl.edu	37	chr17	42991133	42991133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaagaaccggatctcctccTccagcgactcaatcttcctc	5	17	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	42991133	42991133	T	C	SNP	GFAP	ENST00000253408	human	ensembl	69_37n	-1	known	missense	c.581	p.E194G	1.000	pfam_F	pfam_F	-	no_errors	GFAP	HGNC	ENSG00000131095	192	0	0	125	16	11.35	-	-	-	C	42991133	T	C	42991133	3	2	232	1	0	0	0	0	1	0	0	0	6389	1551	54	5	874	5	GFAP	17	42991133	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1420313	42991133	38204077	2444	17970										
DCAKD	0	genome.wustl.edu	37	chr17	43111608	43111608	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccttgcgaatctcggggTgggtgatggcgttgagcagc	16	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	43111608	43111608	T	G	SNP	DCAKD	ENST00000342350	human	ensembl	69_37n	-1	known	missense	c.263	p.H88P	1.000	pfam_Depp_CoAkinase,tigrfam_Depp_CoAkinase	pfam_Depp_CoAkinase,tigrfam_Depp_CoAkinase	-	no_errors	DCAKD	HGNC	ENSG00000172992	25	0	0	27	9	25	-	-	-	G	43111608	T	G	43111608	3	3	232	1	0	0	0	0	1	0	0	0	4310	1696	59	5	444	5	DCAKD	17	43111608	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	120475	43111608	38083602	2445	17971										
MAPT	0	genome.wustl.edu	37	chr17	44067366	44067366	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctgtgtgcccagagccAccttcctctcctaaatacgt	7	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	44067366	44067366	A	C	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	silent	c.1305	p.P435	0.906	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	243	1	0.41	303	71	18.83	-	-	-	C	44067366	A	C	44067366	2	2	232	1	0	0	0	0	0	0	0	1	9368	146	6	5		5	MAPT	17	44067366	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	955758	44067366	37127844	2446	17972										
ITGB3	0	genome.wustl.edu	37	chr17	45362032	45362032	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatacatgtatatctccccAccagaggccctcgaaaaccc	5	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45362032	45362032	A	C	SNP	ITGB3	ENST00000262017	human	ensembl	69_37n	1	known	silent	c.585	p.P195	0.983	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	217	1	0.46	284	42	12.84	-	-	-	C	45362032	A	C	45362032	2	2	232	1	0	0	0	0	0	0	0	1	7949	146	6	5		5	ITGB3	17	45362032	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1294666	45362032	35833178	2447	17973										
NPEPPS	0	genome.wustl.edu	37	chr17	45699243	45699243	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgagatgctgagagcatccAccagtacctccttcagcgga	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45699243	45699243	A	C	SNP	NPEPPS	ENST00000322157	human	ensembl	69_37n	1	known	missense	c.2717	p.H906P	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279	65	0	0	49	15	23.44	-	-	-	C	45699243	A	C	45699243	3	2	232	1	0	0	0	0	1	0	0	0	10647	159	6	5	2807	5	NPEPPS	17	45699243	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	337211	45699243	35495967	2448	17974										
SP2	0	genome.wustl.edu	37	chr17	45993626	45993626	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctcccccacagcccacAccgcggaaacttgtccctat	6	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45993626	45993626	A	C	SNP	SP2	ENST00000376741	human	ensembl	69_37n	1	known	silent	c.189	p.T63	0.873	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	546	5	0.9	383	70	15.42	-	-	-	C	45993626	A	C	45993626	2	2	232	1	0	0	0	0	0	0	0	1	15053	146	6	5		5	SP2	17	45993626	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	294383	45993626	35201584	2449	17975			14	44	38576525	4	4	720	N	T_A	5.154191e-05
SP2	0	genome.wustl.edu	37	chr17	45994011	45994011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagtcgagtacgaccaccAcccccgtgcagagcggggcc	13	15	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45994011	45994011	A	C	SNP	SP2	ENST00000376741	human	ensembl	69_37n	1	known	missense	c.574	p.T192P	0.367	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	231	1	0.43	142	40	21.86	-	-	-	C	45994011	A	C	45994011	3	2	232	1	0	0	0	0	1	0	0	0	15053	159	6	5	584	5	SP2	17	45994011	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	385	45994011	35201199	2450	17976			14	44	38576525	4	4	720	N	T_A	5.154191e-05
SP2	0	genome.wustl.edu	37	chr17	45994052	45994052	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgtggtgaagctgacaggTgggggcggcaatgtgacgct	18	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45994052	45994052	T	G	SNP	SP2	ENST00000376741	human	ensembl	69_37n	1	known	silent	c.615	p.G205	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	245	1	0.4	147	21	12.5	-	-	-	G	45994052	T	G	45994052	2	3	232	1	0	0	0	0	0	0	0	1	15053	1683	59	5		5	SP2	17	45994052	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	41	45994052	35201158	2451	17977			14	44	38576525	4	4	720	N	T_A	5.154191e-05
SP2	0	genome.wustl.edu	37	chr17	45994345	45994345	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtggtccagcaggtccaggTggtgccccccaaggccgagc	15	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	45994345	45994345	T	G	SNP	SP2	ENST00000376741	human	ensembl	69_37n	1	known	missense	c.908	p.V303G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	129	0	0	89	13	12.75	-	-	-	G	45994345	T	G	45994345	3	3	232	1	0	0	0	0	1	0	0	0	15053	1696	59	5	918	5	SP2	17	45994345	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	293	45994345	35200865	2452	17978			14	44	38576525	4	4	720	N	T_A	5.154191e-05
HOXB6	0	genome.wustl.edu	37	chr17	46673849	46673849	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagtttgctctcctttttccActtcatgcgtcggttctgga	8	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	46673849	46673849	A	C	SNP	HOXB6	ENST00000225648	human	ensembl	69_37n	-1	known	missense	c.601	p.W201G	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia,pfscan_Homeodomain	-	no_errors	HOXB6	HGNC	ENSG00000108511	287	1	0.35	277	33	10.58	-	-	-	C	46673849	A	C	46673849	3	2	232	1	0	0	0	0	1	0	0	0	7356	159	6	5	77	5	HOXB6	17	46673849	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	679504	46673849	34521361	2453	17979										
PHB	0	genome.wustl.edu	37	chr17	47484119	47484119	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccatctggtcgaaggctcAccttttccaccacaaatctg	7	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	47484119	47484119	A	C	SNP	PHB	ENST00000300408	human	ensembl	69_37n	-1	known	splice_site	c.606+2	e5+2	1.000	-	-	-	no_errors	PHB	HGNC	ENSG00000167085	41	0	0	21	5	19.23	-	-	-	C	47484119	A	C	47484119	5	2	232	1	0	0	0	0	0	0	1	0	11888	173	6	5	218	5	PHB	17	47484119	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	810270	47484119	33711091	2454	17980										
SGCA	0	genome.wustl.edu	37	chr17	48245341	48245341	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcgggacagctttgataccActcggcagaggctggtgctg	14	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	48245341	48245341	A	C	SNP	SGCA	ENST00000262018	human	ensembl	69_37n	1	known	missense	c.346	p.T116P	0.983	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823	125	0	0	112	19	14.5	-	-	-	C	48245341	A	C	48245341	3	2	232	1	0	0	0	0	1	0	0	0	14287	159	6	5	360	5	SGCA	17	48245341	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	761222	48245341	32949869	2455	17981										
EPN3	0	genome.wustl.edu	37	chr17	48619018	48619018	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgactcgttggtcaaggcAccccaggttgcaaagacccg	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	48619018	48619018	A	C	SNP	EPN3	ENST00000537145	human	ensembl	69_37n	1	known	silent	c.1632	p.A544	0.013	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283	58	0	0	58	11	15.71	-	-	-	C	48619018	A	C	48619018	2	2	232	1	0	0	0	0	0	0	0	1	5224	146	6	5		5	EPN3	17	48619018	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	373677	48619018	32576192	2456	17982										
ABCC3	0	genome.wustl.edu	37	chr17	48735473	48735473	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaccccttccgcttcaccAccttctacatccactttgcc	3	20	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	48735473	48735473	A	C	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.517	p.T173P	1.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	135	0	0	86	15	14.71	-	-	-	C	48735473	A	C	48735473	3	2	232	1	0	0	0	0	1	0	0	0	54	159	6	5	535	5	ABCC3	17	48735473	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	116455	48735473	32459737	2457	17983										
ABCC3	0	genome.wustl.edu	37	chr17	48755175	48755175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgctcacctatctactcccActtttcggagacagtgactg	7	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	48755175	48755175	A	C	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.3449	p.H1150P	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	209	2	0.95	222	43	16.1	-	-	-	C	48755175	A	C	48755175	3	2	232	1	0	0	0	0	1	0	0	0	54	159	6	5	3627	5	ABCC3	17	48755175	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19702	48755175	32440035	2458	17984										
ANKRD40	0	genome.wustl.edu	37	chr17	48774467	48774467	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatgggttctgaattctcAccttgagtaccagctctaga	10	9	3	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	48774467	48774467	A	C	SNP	ANKRD40	ENST00000285243	human	ensembl	69_37n	-1	known	missense	c.794	p.V265G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	54	0	0	52	11	17.46	-	-	-	C	48774467	A	C	48774467	3	2	232	1	0	0	0	0	1	0	0	0	668	159	6	5	320	5	ANKRD40	17	48774467	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	19292	48774467	32420743	2459	17985										
SPAG9	0	genome.wustl.edu	37	chr17	49057223	49057223	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacccacacgccatcccccAcccacgcaagctgtcgcact	6	21	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	49057223	49057223	A	C	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.3293	p.V1098G	1.000	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	167	0	0	183	42	18.58	-	-	-	C	49057223	A	C	49057223	3	2	232	1	0	0	0	0	1	0	0	0	15076	159	6	5	692	5	SPAG9	17	49057223	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	282756	49057223	32137987	2460	17986										
CA10	0	genome.wustl.edu	37	chr17	50212250	50212250	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgactcaccattctccctcAcccccaccatacacagttca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	50212250	50212250	A	C	SNP	CA10	ENST00000340813	human	ensembl	69_37n	-1	known	missense	c.68	p.V23G	0.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975	202	0	0	174	41	18.98	-	-	-	C	50212250	A	C	50212250	3	2	232	1	0	0	0	0	1	0	0	0	2536	174	6	5		5	CA10	17	50212250	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1155027	50212250	30982960	2461	17987	198	2								
CA10	0	genome.wustl.edu	37	chr17	50212256	50212256	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccattctccctcacccccAccatacacagttcatcaggc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	50212256	50212256	A	C	SNP	CA10	ENST00000340813	human	ensembl	69_37n	-1	known	missense	c.62	p.V21G	0.001	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975	199	2	1	182	36	16.44	-	-	-	C	50212256	A	C	50212256	3	2	232	1	0	0	0	0	1	0	0	0	2536	174	6	5		5	CA10	17	50212256	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6	50212256	30982954	2462	17988	198	2								
TRIM25	0	genome.wustl.edu	37	chr17	54981830	54981830	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcttgttgtagctgctccAcctttctgtttgcagtcatc	7	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	54981830	54981830	A	C	SNP	TRIM25	ENST00000316881	human	ensembl	69_37n	-1	known	missense	c.713	p.V238G	0.006	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM25	HGNC	ENSG00000121060	189	0	0	244	57	18.57	-	-	-	C	54981830	A	C	54981830	3	2	232	1	0	0	0	0	1	0	0	0	16595	159	6	5	1207	5	TRIM25	17	54981830	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4769574	54981830	26213380	2463	17989										
AKAP1	0	genome.wustl.edu	37	chr17	55184327	55184327	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagccaaagtgtccctttggTggcttctccaggacactgct	10	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	55184327	55184327	T	G	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	missense	c.1502	p.V501G	0.000	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	101	0	0	142	19	11.8	-	-	-	G	55184327	T	G	55184327	3	3	232	1	0	0	0	0	1	0	0	0	445	1696	59	5	1504	5	AKAP1	17	55184327	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	202497	55184327	26010883	2464	17990										
TEX14	0	genome.wustl.edu	37	chr17	56663437	56663437	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttctttgccatttctttcAcctccactgtgcataagaga	5	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	56663437	56663437	A	C	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	missense	c.2813	p.V938G	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	107	0	0	82	26	23.85	-	-	-	C	56663437	A	C	56663437	3	2	232	1	0	0	0	0	1	0	0	0	15873	159	6	5	1744	5	TEX14	17	56663437	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1479110	56663437	24531773	2465	17991										
TBX4	0	genome.wustl.edu	37	chr17	59557597	59557597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaacggggcacactcacagcTcgcggagccgcaggacctgc	14	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	59557597	59557597	T	C	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	1	known	missense	c.938	p.L313P	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	49	0	0	32	5	13.51	-	-	-	C	59557597	T	C	59557597	3	2	232	1	0	0	0	0	1	0	0	0	15755	1551	54	5	964	5	TBX4	17	59557597	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2894160	59557597	21637613	2466	17992										
MED13	0	genome.wustl.edu	37	chr17	60088225	60088225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactctgaggagttgaaggTgttttagtcactccttcatc	10	8	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	60088225	60088225	T	G	SNP	MED13	ENST00000583958	human	ensembl	69_37n	-1	putative	missense	c.631	p.T211P	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MED13	HGNC	ENSG00000108510	136	0	0	144	17	10.49	-	-	-	G	60088225	T	G	60088225	3	3	232	1	0	0	0	0	1	0	0	0	9501	1683	59	5	4959	5	MED13	17	60088225	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	530628	60088225	21106985	2467	17993										
TANC2	0	genome.wustl.edu	37	chr17	61417657	61417657	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accccatggcctccttccggAggggagttctggagccacta	12	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61417657	61417657	A	G	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.1549	p.R517G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	210	0	0	177	35	16.43	-	-	-	G	61417657	A	G	61417657	3	3	232	1	0	0	0	0	1	0	0	0	15637	295	11	5	1587	5	TANC2	17	61417657	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1329432	61417657	19777553	2468	17994										
TANC2	0	genome.wustl.edu	37	chr17	61498464	61498464	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttcctcagcataccgaggTggcgtgagatacagccagac	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61498464	61498464	T	G	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	silent	c.5121	p.G1707	0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	229	0	0	213	32	13.01	-	-	-	G	61498464	T	G	61498464	2	3	232	1	0	0	0	0	0	0	0	1	15637	1683	59	5		5	TANC2	17	61498464	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	80807	61498464	19696746	2469	17995										
DDX42	0	genome.wustl.edu	37	chr17	61895210	61895210	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acagtcctgacagccccgtcAccagtgccgccaagggcatc	10	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61895210	61895210	A	C	SNP	DDX42	ENST00000389924	human	ensembl	69_37n	1	known	missense	c.2269	p.T757P	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231	128	1	0.78	79	22	21.78	-	-	-	C	61895210	A	C	61895210	3	2	232	1	0	0	0	0	1	0	0	0	4393	159	6	5	2335	5	DDX42	17	61895210	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	396746	61895210	19300000	2470	17996										
FTSJ3	0	genome.wustl.edu	37	chr17	61897288	61897288	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggcgcactttgcggcccacAccttttttggctacaacgta	9	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61897288	61897288	A	C	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	silent	c.2418	p.G806	0.994	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	295	1	0.34	295	51	14.66	-	-	-	C	61897288	A	C	61897288	2	2	232	1	0	0	0	0	0	0	0	1	6138	146	6	5		5	FTSJ3	17	61897288	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2078	61897288	19297922	2471	17997										
PSMC5	0	genome.wustl.edu	37	chr17	61908408	61908408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacacaggggcaagaatggTgagggagctgtttgtcatgg	16	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61908408	61908408	T	G	SNP	PSMC5	ENST00000310144	human	ensembl	69_37n	1	known	missense	c.692	p.V231G	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC5	HGNC	ENSG00000087191	97	0	0	92	19	17.12	-	-	-	G	61908408	T	G	61908408	3	3	232	1	0	0	0	0	1	0	0	0	12770	1696	59	5	722	5	PSMC5	17	61908408	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11120	61908408	19286802	2472	17998										
PSMC5	0	genome.wustl.edu	37	chr17	61908770	61908770	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacagaaaaattgaattcccAccccccaatgaggaggtttg	9	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	61908770	61908770	A	C	SNP	PSMC5	ENST00000310144	human	ensembl	69_37n	1	known	silent	c.954	p.P318	0.989	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC5	HGNC	ENSG00000087191	166	1	0.59	166	39	18.93	-	-	-	C	61908770	A	C	61908770	2	2	232	1	0	0	0	0	0	0	0	1	12770	146	6	5		5	PSMC5	17	61908770	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	362	61908770	19286440	2473	17999										
DDX5	0	genome.wustl.edu	37	chr17	62499649	62499649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attcagcagctacttgctgcAcctgttgggccagttcccga	10	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	62499649	62499649	A	C	SNP	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	missense	c.548	p.V183G	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	120	0	0	125	24	16	-	-	-	C	62499649	A	C	62499649	3	2	232	1	0	0	0	0	1	0	0	0	4398	159	6	5	1328	5	DDX5	17	62499649	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	590879	62499649	18695561	2474	18000										
LRRC37A3	0	genome.wustl.edu	37	chr17	62857046	62857046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aattcttccgggcttgtaacAccttcatgaacgctccttct	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	62857046	62857046	A	C	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.3218	p.V1073G	0.067	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	292	0	0	295	49	14.24	-	-	-	C	62857046	A	C	62857046	3	2	232	1	0	0	0	0	1	0	0	0	9059	159	6	5	1702	5	LRRC37A3	17	62857046	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	357397	62857046	18338164	2475	18001										
ARSG	0	genome.wustl.edu	37	chr17	66416439	66416439	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtgcccctagaaagaggTggtgcggagtaccaggctgt	16	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	66416439	66416439	T	G	SNP	ARSG	ENST00000448504	human	ensembl	69_37n	1	known	silent	c.1413	p.G471	0.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337	167	0	0	164	32	16.33	-	-	-	G	66416439	T	G	66416439	2	3	232	1	0	0	0	0	0	0	0	1	996	1683	59	5		5	ARSG	17	66416439	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3559393	66416439	14778771	2476	18002										
ABCA9	0	genome.wustl.edu	37	chr17	67022599	67022599	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcccattggatatgaacAccttcctgtctagttagaaa	7	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	67022599	67022599	A	C	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.2060	p.V687G	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	357	0	0	218	72	24.83	-	-	-	C	67022599	A	C	67022599	3	2	232	1	0	0	0	0	1	0	0	0	39	159	6	5	2910	5	ABCA9	17	67022599	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	606160	67022599	14172611	2477	18003										
ABCA9	0	genome.wustl.edu	37	chr17	67041460	67041460	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgcttttttcatcaggccAccccatgattgttcttcctg	6	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	67041460	67041460	A	C	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.322	p.W108G	0.586	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	168	0	0	134	30	18.29	-	-	-	C	67041460	A	C	67041460	3	2	232	1	0	0	0	0	1	0	0	0	39	159	6	5	4696	5	ABCA9	17	67041460	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18861	67041460	14153750	2478	18004										
ABCA6	0	genome.wustl.edu	37	chr17	67079433	67079433	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttatgggtggtcaggaggacAcctctctctgtgtttttaac	11	8	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	67079433	67079433	A	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4395	p.G1465	0.021	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	266	2	0.75	175	30	14.56	-	-	-	C	67079433	A	C	67079433	2	2	232	1	0	0	0	0	0	0	0	1	36	146	6	5		5	ABCA6	17	67079433	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	37973	67079433	14115777	2479	18005										
ABCA6	0	genome.wustl.edu	37	chr17	67080464	67080464	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatccaggagcaagacaggTgagtttcccaggaggctcag	13	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	67080464	67080464	T	G	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4293	p.S1431	0.180	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	552	1	0.18	435	81	15.64	-	-	-	G	67080464	T	G	67080464	2	3	232	1	0	0	0	0	0	0	0	1	36	1683	59	5		5	ABCA6	17	67080464	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1031	67080464	14114746	2480	18006										
KCNJ2	0	genome.wustl.edu	37	chr17	68172085	68172085	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcatactggaaggcatggTggaagccactgccatgacga	14	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	68172085	68172085	T	G	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.905	p.V302G	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	118	1	0.84	91	15	14.15	-	-	-	G	68172085	T	G	68172085	3	3	232	1	0	0	0	0	1	0	0	0	8105	1696	59	5	907	5	KCNJ2	17	68172085	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1091621	68172085	13023125	2481	18007										
KIF19	0	genome.wustl.edu	37	chr17	72347013	72347013	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagagcattgcagccctggTggacgagcagaagcaactgc	15	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	72347013	72347013	T	G	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	missense	c.1556	p.V519G	0.052	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	30	0	0	19	8	29.63	-	-	-	G	72347013	T	G	72347013	3	3	232	1	0	0	0	0	1	0	0	0	8334	1696	59	5	1602	5	KIF19	17	72347013	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4174928	72347013	8848197	2482	18008										
ACOX1	0	genome.wustl.edu	37	chr17	73946910	73946910	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaaaggtacagcttggggTgaaattgacataaatatttg	10	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	73946910	73946910	T	G	SNP	ACOX1	ENST00000293217	human	ensembl	69_37n	-1	known	missense	c.1243	p.T415P	1.000	superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533	46	0	0	60	13	17.81	-	-	-	G	73946910	T	G	73946910	3	3	232	1	0	0	0	0	1	0	0	0	158	1696	59	5	763	5	ACOX1	17	73946910	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1599897	73946910	7248300	2483	18009										
SRP68	0	genome.wustl.edu	37	chr17	74035868	74035868	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccaacttgtcctcaaggggTgggaaagccacatggttgag	13	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	74035868	74035868	T	G	SNP	SRP68	ENST00000307877	human	ensembl	69_37n	-1	known	silent	c.1803	p.P601	0.518	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881	28	0	0	30	7	18.92	-	-	-	G	74035868	T	G	74035868	2	3	232	1	0	0	0	0	0	0	0	1	15247	1683	59	5		5	SRP68	17	74035868	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	88958	74035868	7159342	2484	18010										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623528	74623528	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctccatgaagccaaagggTggtgcaaagtgttccaggcg	14	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	74623528	74623528	T	G	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	silent	c.969	p.P323	0.200	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	106	1	0.93	62	18	22.5	-	-	-	G	74623528	T	G	74623528	2	3	232	1	0	0	0	0	0	0	0	1	15314	1683	59	5		5	ST6GALNAC1	17	74623528	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	587660	74623528	6571682	2485	18011										
MGAT5B	0	genome.wustl.edu	37	chr17	74943931	74943931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggacttctgcagagctccagAccctgccctaccagaggccc	10	17	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	74943931	74943931	A	C	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.1970	p.D657A	0.105	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	37	0	0	15	5	25	-	-	-	C	74943931	A	C	74943931	3	2	232	1	0	0	0	0	1	0	0	0	9620	275	10	5	2100	5	MGAT5B	17	74943931	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	320403	74943931	6251279	2486	18012										
TNRC6C	0	genome.wustl.edu	37	chr17	76063872	76063872	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagaaggctggggcagtggTggggatgaaatgaacctcag	17	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	76063872	76063872	T	G	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	silent	c.2637	p.G879	1.000	pfam_Argonaute_hook_dom	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	93	0	0	95	19	16.67	-	-	-	G	76063872	T	G	76063872	2	3	232	1	0	0	0	0	0	0	0	1	16437	1683	59	5		5	TNRC6C	17	76063872	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1119941	76063872	5131338	2487	18013										
DNAH17	0	genome.wustl.edu	37	chr17	76471472	76471472	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccactgccgcccacccccAccagcagggcattcccccgg	9	22	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	76471472	76471472	A	C	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.8357	p.V2786G	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	64	0	0	57	17	22.97	-	-	-	C	76471472	A	C	76471472	3	2	232	1	0	0	0	0	1	0	0	0	4637	159	6	5	5101	5	DNAH17	17	76471472	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	407600	76471472	4723738	2488	18014										
RNF213	0	genome.wustl.edu	37	chr17	78321542	78321542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggacctcggtctggggacccAccgcgtcaaatgtcgggttc	14	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	17	78321542	78321542	A	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.9407	p.H3136P	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	43	0	0	21	13	38.24	-	-	-	C	78321542	A	C	78321542	3	2	232	1	0	0	0	0	1	0	0	0	13563	159	6	5	9836	5	RNF213	17	78321542	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1850070	78321542	2873668	2489	18015										
COLEC12	0	genome.wustl.edu	37	chr18	335127	335127	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctcacccgcagggccaggTggtccaggctcccccttctc	10	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	335127	335127	T	G	SNP	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	silent	c.1431	p.P477	0.000	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	41	0	0	42	18	29.03	-	-	-	G	335127	T	G	335127	2	3	232	1	0	0	0	0	0	0	0	1	3742	1683	59	5		5	COLEC12	18	335127	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		335127	77742121	2490	18016										
CLUL1	0	genome.wustl.edu	37	chr18	619225	619225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttttaggtttttctgaggTgggggagatagatgcagatg	15	3	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	619225	619225	T	G	SNP	CLUL1	ENST00000338387	human	ensembl	69_37n	1	known	missense	c.119	p.V40G	0.014	pfam_Clusterin-like,smart_Clusterin_N	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	181	0	0	162	21	11.35	-	-	-	G	619225	T	G	619225	3	3	232	1	0	0	0	0	1	0	0	0	3600	1696	59	5	125	5	CLUL1	18	619225	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	284098	619225	77458023	2491	18017										
L3MBTL4	0	genome.wustl.edu	37	chr18	6263967	6263967	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggaaaacagctcaacaggTgctgcgacagccttctgttc	10	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	6263967	6263967	T	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	silent	c.198	p.A66	0.449	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	145	0	0	111	25	18.38	-	-	-	G	6263967	T	G	6263967	2	3	232	1	0	0	0	0	0	0	0	1	8648	1683	59	5		5	L3MBTL4	18	6263967	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5644742	6263967	71813281	2492	18018										
RALBP1	0	genome.wustl.edu	37	chr18	9525756	9525756	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacatcgagatctgcagggTgggataaaggatttgtctaa	12	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	9525756	9525756	T	G	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	silent	c.1254	p.G418	0.016	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	134	0	0	157	23	12.78	-	-	-	G	9525756	T	G	9525756	2	3	232	1	0	0	0	0	0	0	0	1	13095	1683	59	5		5	RALBP1	18	9525756	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3261789	9525756	68551492	2493	18019										
TXNDC2	0	genome.wustl.edu	37	chr18	9887412	9887412	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccatccagcccaaggagggTgacatccccaagtccccaga	10	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	9887412	9887412	T	G	SNP	TXNDC2	ENST00000536353	human	ensembl	69_37n	1	putative	nonstop	c.331	p.*111G	0.000	NULL	NULL	-	no_errors	TXNDC2	HGNC	ENSG00000168454	452	2	0.44	484	59	10.81	-	-	-	G	9887412	T	G	9887412	4	3	232	1	0	0	0	0	0	0	0	0	16894	1683	59	5	942	5	TXNDC2	18	9887412	Nonstop_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	361656	9887412	68189836	2494	18020										
IMPA2	0	genome.wustl.edu	37	chr18	12028879	12028879	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccacattggcactctgccAcctggcctcaggggccgcgg	12	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	12028879	12028879	A	C	SNP	IMPA2	ENST00000269159	human	ensembl	69_37n	1	known	missense	c.638	p.H213P	1.000	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401	71	0	0	79	23	22.55	-	-	-	C	12028879	A	C	12028879	3	2	232	1	0	0	0	0	1	0	0	0	7777	159	6	5	664	5	IMPA2	18	12028879	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2141467	12028879	66048369	2495	18021										
SPIRE1	0	genome.wustl.edu	37	chr18	12506621	12506621	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattcctcaaatccctcatcAcctgtacccagaatcgtgcc	4	17	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	12506621	12506621	A	C	SNP	SPIRE1	ENST00000409402	human	ensembl	69_37n	-1	known	missense	c.827	p.V276G	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE1	HGNC	ENSG00000134278	220	0	0	204	29	12.45	-	-	-	C	12506621	A	C	12506621	3	2	232	1	0	0	0	0	1	0	0	0	15162	159	6	5	1491	5	SPIRE1	18	12506621	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	477742	12506621	65570627	2496	18022										
PTPN2	0	genome.wustl.edu	37	chr18	12817187	12817187	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgtctaccagagagaaggTgccagagcgcccaatgcctg	13	11	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	12817187	12817187	T	G	SNP	PTPN2	ENST00000309660	human	ensembl	69_37n	-1	known	missense	c.673	p.T225P	1.000	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354	292	1	0.34	276	41	12.85	-	-	-	G	12817187	T	G	12817187	3	3	232	1	0	0	0	0	1	0	0	0	12866	1696	59	5	616	5	PTPN2	18	12817187	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	310566	12817187	65260061	2497	18023										
CEP192	0	genome.wustl.edu	37	chr18	13103575	13103575	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctgtcatctttagcgccAccttatgtcaaggtcagtca	7	12	6	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	13103575	13103575	A	C	SNP	CEP192	ENST00000589993	human	ensembl	69_37n	1	known	missense	c.2582	p.H861P	0.786	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP192	HGNC	ENSG00000101639	136	0	0	91	16	14.95	-	-	-	C	13103575	A	C	13103575	3	2	232	1	0	0	0	0	1	0	0	0	3280	146	6	5	7089	5	CEP192	18	13103575	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	286388	13103575	64973673	2498	18024										
C18orf1	0	genome.wustl.edu	37	chr18	13645425	13645425	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatagcgggggtccatgcccAcccagcagcaactcgggcat	12	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	13645425	13645425	A	C	SNP	C18orf1	ENST00000359446	human	ensembl	69_37n	1	known	silent	c.690	p.P230	0.872	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	C18orf1	HGNC	ENSG00000168675	80	0	0	50	15	23.08	-	-	-	C	13645425	A	C	13645425	2	2	232	1	0	0	0	0	0	0	0	1	1911	146	6	5		5	C18orf1	18	13645425	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	541850	13645425	64431823	2499	18025										
MIB1	0	genome.wustl.edu	37	chr18	19371401	19371401	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtggagatgctgctcagggTgcagaaggaggcacctcgca	16	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	19371401	19371401	T	G	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	silent	c.975	p.G325	1.000	NULL	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	168	0	0	201	37	15.55	-	-	-	G	19371401	T	G	19371401	2	3	232	1	0	0	0	0	0	0	0	1	9637	1683	59	5		5	MIB1	18	19371401	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5725976	19371401	58705847	2500	18026										
LAMA3	0	genome.wustl.edu	37	chr18	21419829	21419829	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtggcaggcctttccctcAcctgccccagcagtcgtcac	9	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	21419829	21419829	A	C	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.3272	p.H1091P	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	141	1	0.7	73	25	25.51	-	-	-	C	21419829	A	C	21419829	3	2	232	1	0	0	0	0	1	0	0	0	8661	159	6	5	3378	5	LAMA3	18	21419829	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2048428	21419829	56657419	2501	18027										
SS18	0	genome.wustl.edu	37	chr18	23618527	23618527	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggagagattaccatcagggTaatattgctggttcatgcct	11	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	23618527	23618527	T	G	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	missense	c.872	p.Y291S	1.000	NULL	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	293	0	0	153	26	14.53	-	-	-	G	23618527	T	G	23618527	3	3	232	1	0	0	0	0	1	0	0	0	15266	1638	57	5	404	5	SS18	18	23618527	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2198698	23618527	54458721	2502	18028										
CHST9	0	genome.wustl.edu	37	chr18	24496533	24496533	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtccattcctactggacggTgggaatccagcaagtagtgg	13	9	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	24496533	24496533	T	G	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.1022	p.H341P	0.997	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	422	2	0.47	261	37	12.37	-	-	-	G	24496533	T	G	24496533	3	3	232	1	0	0	0	0	1	0	0	0	3440	1696	59	5	313	5	CHST9	18	24496533	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	878006	24496533	53580715	2503	18029										
DSG1	0	genome.wustl.edu	37	chr18	28934978	28934978	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataggtagtctgagtatgcAccccgagttagccaatgccc	11	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	28934978	28934978	A	C	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	1	known	missense	c.2819	p.H940P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	337	2	0.59	236	34	12.55	-	-	-	C	28934978	A	C	28934978	3	2	232	1	0	0	0	0	1	0	0	0	4811	159	6	5	2877	5	DSG1	18	28934978	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4438445	28934978	49142270	2504	18030										
DSG4	0	genome.wustl.edu	37	chr18	28991230	28991230	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctatgcagccgggggcacggTggaaggaggtgtatcgggag	20	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	28991230	28991230	T	G	SNP	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	missense	c.2231	p.V744G	0.043	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	64	0	0	82	18	18	-	-	-	G	28991230	T	G	28991230	3	3	232	1	0	0	0	0	1	0	0	0	4814	1696	59	5	2353	5	DSG4	18	28991230	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	56252	28991230	49086018	2505	18031										
DSG2	0	genome.wustl.edu	37	chr18	29122633	29122633	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtccgagatggatggaaggTgggaagaacacagaagcctg	16	6	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	29122633	29122633	T	G	SNP	DSG2	ENST00000261590	human	ensembl	69_37n	1	known	missense	c.2152	p.W718G	0.995	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	150	1	0.66	117	25	17.61	-	-	-	G	29122633	T	G	29122633	3	3	232	1	0	0	0	0	1	0	0	0	4812	1696	59	5	2206	5	DSG2	18	29122633	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	131403	29122633	48954615	2506	18032										
C18orf34	0	genome.wustl.edu	37	chr18	30554590	30554590	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatctggctgaagaggaccAccagtttgaagtgctcctgc	11	11	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	30554590	30554590	A	C	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	missense	c.2516	p.V839G	1.000	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	28	0	0	37	17	31.48	-	-	-	C	30554590	A	C	30554590	3	2	232	1	0	0	0	0	1	0	0	0	1919	159	6	5	167	5	C18orf34	18	30554590	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1431957	30554590	47522658	2507	18033										
ASXL3	0	genome.wustl.edu	37	chr18	31324041	31324041	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagactctctggttgcacAcccgaccgtcgcaatgttta	8	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	31324041	31324041	A	C	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.4229	p.H1410P	0.170	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	192	1	0.51	177	33	15.64	-	-	-	C	31324041	A	C	31324041	3	2	232	1	0	0	0	0	1	0	0	0	1072	159	6	5	4275	5	ASXL3	18	31324041	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	769451	31324041	46753207	2508	18034										
ELP2	0	genome.wustl.edu	37	chr18	33726233	33726233	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcgagtaggtgaagtaggTgggaatactttgggatttta	15	2	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	33726233	33726233	T	G	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	silent	c.1014	p.G338	0.996	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	323	0	0	165	28	14.51	-	-	-	G	33726233	T	G	33726233	2	3	232	1	0	0	0	0	0	0	0	1	5117	1683	59	5		5	ELP2	18	33726233	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2402192	33726233	44351015	2509	18035										
FHOD3	0	genome.wustl.edu	37	chr18	34349323	34349323	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accgcatcgtcaagtcagccAcccaagtgcccagtcagcga	9	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	34349323	34349323	A	C	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.4171	p.T1391P	1.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	64	0	0	46	16	25.81	-	-	-	C	34349323	A	C	34349323	3	2	232	1	0	0	0	0	1	0	0	0	5929	159	6	5	4265	5	FHOD3	18	34349323	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	623090	34349323	43727925	2510	18036										
KIAA1328	0	genome.wustl.edu	37	chr18	34753007	34753007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagcctaaaggattttgtcAccacagcctcaccatcatta	6	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	34753007	34753007	A	C	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	missense	c.1486	p.T496P	0.000	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	374	0	0	255	36	12.37	-	-	-	C	34753007	A	C	34753007	3	2	232	1	0	0	0	0	1	0	0	0	8277	159	6	5	1520	5	KIAA1328	18	34753007	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	403684	34753007	43324241	2511	18037										
SYT4	0	genome.wustl.edu	37	chr18	40850381	40850381	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctctttccagtgctctccAccagttccttctgctgctgc	6	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	40850381	40850381	A	C	SNP	SYT4	ENST00000255224	human	ensembl	69_37n	-1	known	silent	c.1203	p.G401	0.987	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	397	0	0	221	41	15.59	-	-	-	C	40850381	A	C	40850381	2	2	232	1	0	0	0	0	0	0	0	1	15568	146	6	5		5	SYT4	18	40850381	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6097374	40850381	37226867	2512	18038										
SYT4	0	genome.wustl.edu	37	chr18	40850402	40850402	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagttccttctgctgctgcAcccaagactaactgcccgat	7	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	40850402	40850402	A	C	SNP	SYT4	ENST00000255224	human	ensembl	69_37n	-1	known	silent	c.1182	p.G394	0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	355	1	0.28	213	42	16.47	-	-	-	C	40850402	A	C	40850402	2	2	232	1	0	0	0	0	0	0	0	1	15568	146	6	5		5	SYT4	18	40850402	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21	40850402	37226846	2513	18039										
SETBP1	0	genome.wustl.edu	37	chr18	42530953	42530953	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcgagaggcagttatggccAcctctgataaactgatgctg	11	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	42530953	42530953	A	C	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.1648	p.T550P	0.998	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	355	0	0	393	46	10.48	-	-	-	C	42530953	A	C	42530953	3	2	232	1	0	0	0	0	1	0	0	0	14217	159	6	5	1851	5	SETBP1	18	42530953	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1680551	42530953	35546295	2514	18040										
SLC14A2	0	genome.wustl.edu	37	chr18	43247956	43247956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctgggtaccatcatgtccAccttgacagccctcatcctg	8	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	43247956	43247956	A	C	SNP	SLC14A2	ENST00000255226	human	ensembl	69_37n	1	known	missense	c.1876	p.T626P	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874	158	1	0.63	103	32	23.7	-	-	-	C	43247956	A	C	43247956	3	2	232	1	0	0	0	0	1	0	0	0	14486	159	6	5	1926	5	SLC14A2	18	43247956	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	717003	43247956	34829292	2515	18041										
TCEB3CL	0	genome.wustl.edu	37	chr18	44549191	44549191	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtacggctgatcgggcgtccAcccttccagaacgggttcaa	12	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	44549191	44549191	A	C	SNP	TCEB3CL	ENST00000451265	human	ensembl	69_37n	-1	known	missense	c.1108	p.W370G	0.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3CL	HGNC	ENSG00000234298	317	2	0.62	160	20	11.11	-	-	-	C	44549191	A	C	44549191	3	2	232	1	0	0	0	0	1	0	0	0	15779	159	6	5	2179	5	TCEB3CL	18	44549191	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1301235	44549191	33528057	2516	18042										
SMAD2	0	genome.wustl.edu	37	chr18	45423010	45423010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcactgctttctcacaccActtttcttcctgcccattct	2	16	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	45423010	45423010	A	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	missense	c.118	p.W40G	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	107	1	0.93	92	20	17.86	-	-	-	C	45423010	A	C	45423010	3	2	232	1	0	0	0	0	1	0	0	0	14847	159	6	5	1325	5	SMAD2	18	45423010	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	873819	45423010	32654238	2517	18043										
LIPG	0	genome.wustl.edu	37	chr18	47107797	47107797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccccagcaatcacagaggTggtaaaatgtgagcatgagc	11	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	47107797	47107797	T	G	SNP	LIPG	ENST00000261292	human	ensembl	69_37n	1	known	missense	c.806	p.V269G	0.095	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep,pfscan_LipOase_LH2	-	no_errors	LIPG	HGNC	ENSG00000101670	154	1	0.64	125	23	15.44	-	-	-	G	47107797	T	G	47107797	3	3	232	1	0	0	0	0	1	0	0	0	8879	1696	59	5	828	5	LIPG	18	47107797	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1684787	47107797	30969451	2518	18044										
MYO5B	0	genome.wustl.edu	37	chr18	47438542	47438542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaaagtcatggtaggcccAcctggagggaaagcaaaggg	15	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	47438542	47438542	A	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.2092	p.W698G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	163	1	0.61	138	22	13.58	-	-	-	C	47438542	A	C	47438542	3	2	232	1	0	0	0	0	1	0	0	0	10151	173	6	5	3546	5	MYO5B	18	47438542	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	330745	47438542	30638706	2519	18045										
MYO5B	0	genome.wustl.edu	37	chr18	47479712	47479712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaccatcagagaggtactccAcctggggccacagcaaccag	10	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	47479712	47479712	A	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.1670	p.V557G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	137	0	0	62	14	18.42	-	-	-	C	47479712	A	C	47479712	3	2	232	1	0	0	0	0	1	0	0	0	10151	173	6	5	3984	5	MYO5B	18	47479712	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	41170	47479712	30597536	2520	18046										
MRO	0	genome.wustl.edu	37	chr18	48327790	48327790	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtctgcttaacctgactggTgaaaaattttttccatttcc	6	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	48327790	48327790	T	G	SNP	MRO	ENST00000436348	human	ensembl	69_37n	-1	known	missense	c.556	p.T186P	0.960	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MRO	HGNC	ENSG00000134042	343	3	0.87	332	40	10.75	-	-	-	G	48327790	T	G	48327790	3	3	232	1	0	0	0	0	1	0	0	0	9844	1696	59	5	244	5	MRO	18	48327790	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	848078	48327790	29749458	2521	18047										
ME2	0	genome.wustl.edu	37	chr18	48473745	48473745	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgattgcattgcccaccagcAccctacagtcagatagttgt	8	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	48473745	48473745	A	C	SNP	ME2	ENST00000585680	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ME2	HGNC	ENSG00000082212	31	0	0	22	6	21.43	-	-	-	C	48473745	A	C	48473745	1	2	232	0	1	0	0	0	0	0	0	0	9489	174	6	5		5	ME2	18	48473745	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	145955	48473745	29603503	2522	18048										
DCC	0	genome.wustl.edu	37	chr18	50592444	50592444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caacttacggatacttggggTggtgaagtcagatgaaggct	14	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	50592444	50592444	T	G	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.1169	p.V390G	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	204	2	0.97	127	40	23.81	-	-	-	G	50592444	T	G	50592444	3	3	232	1	0	0	0	0	1	0	0	0	4313	1696	59	5	1195	5	DCC	18	50592444	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2118699	50592444	27484804	2523	18049										
DCC	0	genome.wustl.edu	37	chr18	50683785	50683785	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtggtccctgtcttggttTccagccgatttgtccgtctc	10	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	50683785	50683785	T	C	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.1321	p.S441P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	327	3	0.91	242	36	12.9	-	-	-	C	50683785	T	C	50683785	3	2	232	1	0	0	0	0	1	0	0	0	4313	1783	62	5	1351	5	DCC	18	50683785	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	91341	50683785	27393463	2524	18050										
ATP8B1	0	genome.wustl.edu	37	chr18	55319782	55319782	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagactggtagtcggaaggTgcctctccatcctgccctac	10	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	55319782	55319782	T	G	SNP	ATP8B1	ENST00000283684	human	ensembl	69_37n	-1	known	silent	c.3195	p.A1065	0.348	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B1	HGNC	ENSG00000081923	138	0	0	142	25	14.97	-	-	-	G	55319782	T	G	55319782	2	3	232	1	0	0	0	0	0	0	0	1	1198	1683	59	5		5	ATP8B1	18	55319782	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4635997	55319782	22757466	2525	18051										
ZNF532	0	genome.wustl.edu	37	chr18	56586018	56586018	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcgaatgtgttgacggggTcggctccccagcaggactac	15	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	56586018	56586018	T	G	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	missense	c.499	p.S167A	0.766	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	341	1	0.29	268	35	11.51	-	-	-	G	56586018	T	G	56586018	3	3	232	1	0	0	0	0	1	0	0	0	18068	1667	58	5	501	5	ZNF532	18	56586018	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1266236	56586018	21491230	2526	18052										
GRP	0	genome.wustl.edu	37	chr18	56892813	56892813	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgagagagtacatcaggTgggaagaagctgcaaggaat	15	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	56892813	56892813	T	G	SNP	GRP	ENST00000256857	human	ensembl	69_37n	1	known	missense	c.229	p.W77G	0.974	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443	265	2	0.75	189	27	12.44	-	-	-	G	56892813	T	G	56892813	3	3	232	1	0	0	0	0	1	0	0	0	6856	1696	59	5	235	5	GRP	18	56892813	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	306795	56892813	21184435	2527	18053										
SERPINB12	0	genome.wustl.edu	37	chr18	61232745	61232745	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aattggcttcatagaggaggTgaaggcacagatcctggaaa	13	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	61232745	61232745	T	G	SNP	SERPINB12	ENST00000269491	human	ensembl	69_37n	1	known	missense	c.713	p.V238G	0.954	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634	207	2	0.95	194	36	15.58	-	-	-	G	61232745	T	G	61232745	3	3	232	1	0	0	0	0	1	0	0	0	14187	1696	59	5	735	5	SERPINB12	18	61232745	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4339932	61232745	16844503	2528	18054										
SERPINB13	0	genome.wustl.edu	37	chr18	61256948	61256948	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaggctgaagaaaaagaggTggtaagaataaaggctgaag	14	2	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	61256948	61256948	T	G	SNP	SERPINB13	ENST00000438844	human	ensembl	69_37n	1	known	splice_site	c.222+2	e2+2	0.855	-	-	-	no_errors	SERPINB13	HGNC	ENSG00000197641	213	0	0	150	29	16.11	-	-	-	G	61256948	T	G	61256948	5	3	232	1	0	0	0	0	0	0	1	0	14188	1710	59	5	230	5	SERPINB13	18	61256948	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	24203	61256948	16820300	2529	18055										
SERPINB13	0	genome.wustl.edu	37	chr18	61264263	61264263	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatatggaagaaagaaaggTgaatctgcacttgccccggt	12	8	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	61264263	61264263	T	G	SNP	SERPINB13	ENST00000344731	human	ensembl	69_37n	1	known	missense	c.842	p.V281G	0.981	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641	204	1	0.48	149	28	15.64	-	-	-	G	61264263	T	G	61264263	3	3	232	1	0	0	0	0	1	0	0	0	14188	1696	59	5	868	5	SERPINB13	18	61264263	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7315	61264263	16812985	2530	18056										
CDH19	0	genome.wustl.edu	37	chr18	64172430	64172430	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctctgtatcttcttctccAcccccttcatcatcatattg	3	16	7	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	64172430	64172430	A	C	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	silent	c.1938	p.G646	0.053	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	314	2	0.63	227	36	13.69	-	-	-	C	64172430	A	C	64172430	2	2	232	1	0	0	0	0	0	0	0	1	3133	146	6	5		5	CDH19	18	64172430	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2908167	64172430	13904818	2531	18057										
ZNF516	0	genome.wustl.edu	37	chr18	74091505	74091505	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctagcggcttttgtgaccacTcccaggggagaagagccact	12	12	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	74091505	74091505	T	C	SNP	ZNF516	ENST00000443185	human	ensembl	69_37n	-1	known	silent	c.2565	p.G855	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493	71	0	0	36	7	16.28	-	-	-	C	74091505	T	C	74091505	2	2	232	1	0	0	0	0	0	0	0	1	18056	1538	54	5		5	ZNF516	18	74091505	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	9919075	74091505	3985743	2532	18058										
ZNF236	0	genome.wustl.edu	37	chr18	74622659	74622659	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catcagcagcctcagtttccAcctgtccaacagctacagga	7	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	18	74622659	74622659	A	C	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	silent	c.2691	p.P897	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	178	1	0.56	115	16	12.21	-	-	-	C	74622659	A	C	74622659	2	2	232	1	0	0	0	0	0	0	0	1	17885	146	6	5		5	ZNF236	18	74622659	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	531154	74622659	3454589	2533	18059										
ZNF77	0	genome.wustl.edu	37	chr19	2939369	2939369	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatgcccactcttctggggTgaagttcacagccacttcct	8	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	2939369	2939369	T	G	SNP	ZNF77	ENST00000314531	human	ensembl	69_37n	-1	known	missense	c.40	p.T14P	0.973	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	111	0	0	81	19	19	-	-	-	G	2939369	T	G	2939369	3	3	232	1	0	0	0	0	1	0	0	0	18236	1696	59	5	1609	5	ZNF77	19	2939369	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		2939369	56189614	2534	18060										
TMIGD2	0	genome.wustl.edu	37	chr19	4292609	4292609	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatctctcactcctctcccActttggggaacccttttggc	8	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	4292609	4292609	A	C	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	missense	c.836	p.V279G	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	26	0	0	28	12	30	-	-	-	C	4292609	A	C	4292609	3	2	232	1	0	0	0	0	1	0	0	0	16326	159	6	5	16	5	TMIGD2	19	4292609	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1353240	4292609	54836374	2535	18061										
EMR1	0	genome.wustl.edu	37	chr19	6896450	6896450	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgtgcccagcttatgccAcctgcaccaatacagtggac	8	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	6896450	6896450	A	C	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	missense	c.136	p.T46P	0.002	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	299	0	0	229	31	11.79	-	-	-	C	6896450	A	C	6896450	3	2	232	1	0	0	0	0	1	0	0	0	5141	159	6	5	146	5	EMR1	19	6896450	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2603841	6896450	52232533	2536	18062										
FBN3	0	genome.wustl.edu	37	chr19	8156389	8156389	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagagaggacaaagccaggTgggcagaggcactggaagct	16	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	8156389	8156389	T	G	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.5991	p.P1997	0.842	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	110	0	0	128	23	15.13	-	-	-	G	8156389	T	G	8156389	2	3	232	1	0	0	0	0	0	0	0	1	5750	1683	59	5		5	FBN3	19	8156389	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1259939	8156389	50972594	2537	18063										
OR2Z1	0	genome.wustl.edu	37	chr19	8841619	8841619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acattggctgtcccatggtcAccatccccaagatggcatca	8	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	8841619	8841619	A	C	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	missense	c.229	p.T77P	0.646	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	120	1	0.83	135	19	12.26	-	-	-	C	8841619	A	C	8841619	3	2	232	1	0	0	0	0	1	0	0	0	11109	159	6	5	231	5	OR2Z1	19	8841619	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	685230	8841619	50287364	2538	18064										
MUC16	0	genome.wustl.edu	37	chr19	9010977	9010977	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agttgaatactcactgctggTgggggccacagagctccgat	13	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9010977	9010977	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.38941	p.T12981P	0.004	smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	401	0	0	460	82	15.1	-	-	-	G	9010977	T	G	9010977	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	4774	5	MUC16	19	9010977	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	169358	9010977	50118006	2539	18065										
MUC16	0	genome.wustl.edu	37	chr19	9045772	9045772	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctccatgactggttttaggTggtgttggcatctctgatgg	13	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9045772	9045772	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.35859	p.P11953	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	236	1	0.42	146	24	13.95	-	-	-	G	9045772	T	G	9045772	2	3	232	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9045772	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	34795	9045772	50083211	2540	18066										
MUC16	0	genome.wustl.edu	37	chr19	9048196	9048196	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accattcctggtacctcaggTgaaacagttagaacagctga	9	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9048196	9048196	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.33435	p.S11145	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	392	1	0.25	344	42	10.85	-	-	-	G	9048196	T	G	9048196	2	3	232	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9048196	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2424	9048196	50080787	2541	18067										
MUC16	0	genome.wustl.edu	37	chr19	9050145	9050145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgggagtatagacactggTggtcaaggtggctctggaag	17	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9050145	9050145	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.31486	p.T10496P	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	1175	1	0.09	1260	176	12.21	-	-	-	G	9050145	T	G	9050145	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	12357	5	MUC16	19	9050145	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1949	9050145	50078838	2542	18068										
MUC16	0	genome.wustl.edu	37	chr19	9067940	9067940	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggttttttccacagagggTgggcttgtccctgatatgta	12	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9067940	9067940	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.19506	p.P6502	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	148	0	0	207	44	17.46	-	-	-	G	9067940	T	G	9067940	2	3	232	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9067940	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	17795	9067940	50061043	2543	18069										
MUC16	0	genome.wustl.edu	37	chr19	9071743	9071743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggacttatcatggtctggggTggaaattttgctagaagagt	14	4	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9071743	9071743	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.15703	p.T5235P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	309	0	0	413	72	14.72	-	-	-	G	9071743	T	G	9071743	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	28148	5	MUC16	19	9071743	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3803	9071743	50057240	2544	18070										
MUC16	0	genome.wustl.edu	37	chr19	9075988	9075988	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctggatgtgcagaagtggTggtgggaagctgagtggaag	19	5	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9075988	9075988	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.11458	p.T3820P	0.061	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	440	1	0.22	443	50	10.14	-	-	-	G	9075988	T	G	9075988	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	32393	5	MUC16	19	9075988	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4245	9075988	50052995	2545	18071										
MUC16	0	genome.wustl.edu	37	chr19	9087146	9087146	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actcatcgttgcagaaagggTgtcctgtgcttgtgttgagt	13	7	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9087146	9087146	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4669	p.T1557P	0.353	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	406	2	0.49	335	40	10.61	-	-	-	G	9087146	T	G	9087146	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	39190	5	MUC16	19	9087146	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11158	9087146	50041837	2546	18072										
MUC16	0	genome.wustl.edu	37	chr19	9087851	9087851	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtagtggtgatgtaggtggTggggtcccaggtactaccag	17	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9087851	9087851	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.3964	p.T1322P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	304	0	0	216	48	18.18	-	-	-	G	9087851	T	G	9087851	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	39895	5	MUC16	19	9087851	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	705	9087851	50041132	2547	18073										
MUC16	0	genome.wustl.edu	37	chr19	9087903	9087903	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggagctgtcatctcaggTgaagacccagaagagtaagc	12	10	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9087903	9087903	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.3912	p.S1304	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	379	1	0.26	288	35	10.74	-	-	-	G	9087903	T	G	9087903	2	3	232	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9087903	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	52	9087903	50041080	2548	18074										
MUC16	0	genome.wustl.edu	37	chr19	9089350	9089350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagtcagtgtcccagttgggTggatgttaggtgagtctgta	15	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9089350	9089350	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.2465	p.H822P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	392	2	0.51	305	57	15.75	-	-	-	G	9089350	T	G	9089350	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	41394	5	MUC16	19	9089350	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1447	9089350	50039633	2549	18075										
MUC16	0	genome.wustl.edu	37	chr19	9090455	9090455	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctagagtggggaccaaggTggcagtcatttcggactctt	13	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9090455	9090455	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.1360	p.T454P	0.005	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	417	1	0.24	376	49	11.5	-	-	-	G	9090455	T	G	9090455	3	3	232	1	0	0	0	0	1	0	0	0	10045	1696	59	5	42499	5	MUC16	19	9090455	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1105	9090455	50038528	2550	18076										
ZNF317	0	genome.wustl.edu	37	chr19	9267296	9267296	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttctcctccagccacgtccAcccaggattccacctgtctc	5	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9267296	9267296	A	C	SNP	ZNF317	ENST00000247956	human	ensembl	69_37n	1	known	missense	c.34	p.T12P	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	480	0	0	541	74	12.01	-	-	-	C	9267296	A	C	9267296	3	2	232	1	0	0	0	0	1	0	0	0	17931	159	6	5	40	5	ZNF317	19	9267296	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	176841	9267296	49861687	2551	18077										
OR7D2	0	genome.wustl.edu	37	chr19	9296873	9296873	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgatcatcatgaacccccAcctctgtggcctcctggttt	7	14	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9296873	9296873	A	C	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.416	p.H139P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	353	2	0.56	353	72	16.78	-	-	-	C	9296873	A	C	9296873	3	2	232	1	0	0	0	0	1	0	0	0	11292	159	6	5	418	5	OR7D2	19	9296873	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	29577	9296873	49832110	2552	18078										
ZNF426	0	genome.wustl.edu	37	chr19	9639849	9639849	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatactgaggtaggctgggTatctatagccttttccacat	10	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9639849	9639849	T	G	SNP	ZNF426	ENST00000253115	human	ensembl	69_37n	-1	known	missense	c.872	p.Y291S	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF426	HGNC	ENSG00000130818	230	0	0	205	24	10.43	-	-	-	G	9639849	T	G	9639849	3	3	232	1	0	0	0	0	1	0	0	0	17996	1638	57	5	796	5	ZNF426	19	9639849	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	342976	9639849	49489134	2553	18079										
OLFM2	0	genome.wustl.edu	37	chr19	9968061	9968061	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactgccggagagattcctcAcctcctcccgcaagcgtaca	9	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	9968061	9968061	A	C	SNP	OLFM2	ENST00000592448	human	ensembl	69_37n	-1	known	splice_site	c.222+2	e2+2	1.000	-	-	-	no_errors	OLFM2	HGNC	ENSG00000105088	110	0	0	99	19	16.1	-	-	-	C	9968061	A	C	9968061	5	2	232	1	0	0	0	0	0	0	1	0	10926	159	6	5	918	5	OLFM2	19	9968061	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	328212	9968061	49160922	2554	18080										
COL5A3	0	genome.wustl.edu	37	chr19	10096558	10096558	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataacctgggaggcctggcAccccaagcttgccctgcaga	12	14	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	10096558	10096558	A	C	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.2366	p.V789G	0.690	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	142	0	0	182	26	12.5	-	-	-	C	10096558	A	C	10096558	3	2	232	1	0	0	0	0	1	0	0	0	3728	159	6	5	3019	5	COL5A3	19	10096558	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	128497	10096558	49032425	2555	18081										
COL5A3	0	genome.wustl.edu	37	chr19	10108823	10108823	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgctcctttctctccagcAccctggggtggggtcagggg	14	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	10108823	10108823	A	C	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	silent	c.1113	p.G371	0.334	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	569	5	0.87	829	126	13.06	-	-	-	C	10108823	A	C	10108823	2	2	232	1	0	0	0	0	0	0	0	1	3728	146	6	5		5	COL5A3	19	10108823	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12265	10108823	49020160	2556	18082										
ECSIT	0	genome.wustl.edu	37	chr19	11624890	11624890	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcgccttgtcccgttccccAccaggcgcctgcccaaacag	8	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	11624890	11624890	A	C	SNP	ECSIT	ENST00000270517	human	ensembl	69_37n	-1	known	silent	c.243	p.G81	0.000	pfam_ECSIT	pfam_ECSIT	-	no_errors	ECSIT	HGNC	ENSG00000130159	53	0	0	80	23	21.7	-	-	-	C	11624890	A	C	11624890	2	2	232	1	0	0	0	0	0	0	0	1	4935	146	6	5		5	ECSIT	19	11624890	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1516067	11624890	47504093	2557	18083										
ZNF563	0	genome.wustl.edu	37	chr19	12430263	12430263	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catttataaggtctatttccAccttgcactaccatgtgtct	5	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	12430263	12430263	A	C	SNP	ZNF563	ENST00000293725	human	ensembl	69_37n	-1	known	silent	c.576	p.G192	0.034	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868	279	0	0	225	45	16.67	-	-	-	C	12430263	A	C	12430263	2	2	232	1	0	0	0	0	0	0	0	1	18090	146	6	5		5	ZNF563	19	12430263	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	805373	12430263	46698720	2558	18084										
MAN2B1	0	genome.wustl.edu	37	chr19	12757534	12757534	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagctggtacggagtttggTggggtgtggggcctggagag	21	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	12757534	12757534	T	G	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	missense	c.2936	p.H979P	0.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	44	0	0	21	5	19.23	-	-	-	G	12757534	T	G	12757534	3	3	232	1	0	0	0	0	1	0	0	0	9287	1696	59	5	103	5	MAN2B1	19	12757534	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	327271	12757534	46371449	2559	18085										
NANOS3	0	genome.wustl.edu	37	chr19	13991312	13991312	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgctctccctccatgtccAcctaggaggctgcctacacc	7	19	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	13991312	13991312	A	C	SNP	NANOS3	ENST00000339133	human	ensembl	69_37n	1	known	missense	c.574	p.T192P	0.056	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556	21	0	0	17	8	32	-	-	-	C	13991312	A	C	13991312	3	2	232	1	0	0	0	0	1	0	0	0	10225	159	6	5	580	5	NANOS3	19	13991312	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1233778	13991312	45137671	2560	18086										
CC2D1A	0	genome.wustl.edu	37	chr19	14029385	14029385	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctcctgcctgccccctccAcccggtgagaaccctgccat	7	21	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	14029385	14029385	A	C	SNP	CC2D1A	ENST00000586955	human	ensembl	69_37n	1	known	missense	c.479	p.H160P	0.999	smart_DM14	smart_DM14	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CC2D1A	HGNC	ENSG00000132024	42	0	0	41	9	18	-	-	-	C	14029385	A	C	14029385	3	2	232	1	0	0	0	0	1	0	0	0	2751	146	6	5	972	5	CC2D1A	19	14029385	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	38073	14029385	45099598	2561	18087										
CC2D1A	0	genome.wustl.edu	37	chr19	14037405	14037405	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacttgcccacacccccaggTgagggggctgtaggcaaggg	15	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	14037405	14037405	T	G	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	splice_site	c.2014+2	e18+2	1.000	-	-	-	no_errors	CC2D1A	HGNC	ENSG00000132024	33	0	0	53	14	20.9	-	-	-	G	14037405	T	G	14037405	5	3	232	1	0	0	0	0	0	0	1	0	2751	1710	59	5	2086	5	CC2D1A	19	14037405	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8020	14037405	45091578	2562	18088										
CD97	0	genome.wustl.edu	37	chr19	14508749	14508749	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctggagtccacagccaggTgagtggcccccacagggacg	14	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	14508749	14508749	T	G	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	splice_site	c.819+2	e8+2	1.000	-	-	-	no_errors	CD97	HGNC	ENSG00000123146	27	0	0	35	13	26	-	-	-	G	14508749	T	G	14508749	5	3	232	1	0	0	0	0	0	0	1	0	3078	1710	59	5	851	5	CD97	19	14508749	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	471344	14508749	44620234	2563	18089										
WIZ	0	genome.wustl.edu	37	chr19	15537897	15537897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcatctcccgcttgatctccAcccgtatttgttcaggcttc	7	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	15537897	15537897	A	C	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.3548	p.V1183G	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	37	0	0	17	10	37.04	-	-	-	C	15537897	A	C	15537897	3	2	232	1	0	0	0	0	1	0	0	0	17472	159	6	5	1427	5	WIZ	19	15537897	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1029148	15537897	43591086	2564	18090										
CYP4F3	0	genome.wustl.edu	37	chr19	15769165	15769165	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgccgtctctcgctgctgcAcccaagacattgtgctccca	8	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	15769165	15769165	A	C	SNP	CYP4F3	ENST00000221307	human	ensembl	69_37n	1	known	missense	c.1207	p.T403P	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529	137	1	0.72	130	30	18.75	-	-	-	C	15769165	A	C	15769165	3	2	232	1	0	0	0	0	1	0	0	0	4221	159	6	5	1241	5	CYP4F3	19	15769165	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	231268	15769165	43359818	2565	18091										
OR10H3	0	genome.wustl.edu	37	chr19	15852482	15852482	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcttcacccatcgttccatcAcctttgtggcttgtgccatt	6	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	15852482	15852482	A	C	SNP	OR10H3	ENST00000305892	human	ensembl	69_37n	1	known	missense	c.280	p.T94P	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H3	HGNC	ENSG00000171936	685	0	0	826	97	10.44	-	-	-	C	15852482	A	C	15852482	3	2	232	1	0	0	0	0	1	0	0	0	10980	159	6	5	282	5	OR10H3	19	15852482	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83317	15852482	43276501	2566	18092										
OR10H3	0	genome.wustl.edu	37	chr19	15853052	15853052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaccacctatactgtcttcAcccccttcctcagcccaatc	2	21	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	15853052	15853052	A	C	SNP	OR10H3	ENST00000305892	human	ensembl	69_37n	1	known	missense	c.850	p.T284P	0.092	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H3	HGNC	ENSG00000171936	458	1	0.22	500	75	13	-	-	-	C	15853052	A	C	15853052	3	2	232	1	0	0	0	0	1	0	0	0	10980	159	6	5	852	5	OR10H3	19	15853052	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	570	15853052	43275931	2567	18093										
CYP4F11	0	genome.wustl.edu	37	chr19	16040302	16040302	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taggccggataatgtcagggTggcataaaatgaggaggggg	18	4	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	16040302	16040302	T	G	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.308	p.H103P	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	54	0	0	81	18	18.18	-	-	-	G	16040302	T	G	16040302	3	3	232	1	0	0	0	0	1	0	0	0	4217	1696	59	5	1310	5	CYP4F11	19	16040302	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	187250	16040302	43088681	2568	18094										
OR10H4	0	genome.wustl.edu	37	chr19	16060554	16060554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attttctacgtgtgtatcccAcctcactgtggtggtcacgc	9	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	16060554	16060554	A	C	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	missense	c.737	p.H246P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	231	1	0.43	277	46	14.2	-	-	-	C	16060554	A	C	16060554	3	2	232	1	0	0	0	0	1	0	0	0	10981	159	6	5	739	5	OR10H4	19	16060554	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	20252	16060554	43068429	2569	18095										
CHERP	0	genome.wustl.edu	37	chr19	16631269	16631269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatcttgagttggagcgggAggaagaacgccctcgactct	15	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	16631269	16631269	A	G	SNP	CHERP	ENST00000546361	human	ensembl	69_37n	-1	known	missense	c.2251	p.S751P	0.998	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	36	0	0	31	5	13.89	-	-	-	G	16631269	A	G	16631269	3	3	232	1	0	0	0	0	1	0	0	0	3365	304	11	5	515	5	CHERP	19	16631269	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	570715	16631269	42497714	2570	18096										
NWD1	0	genome.wustl.edu	37	chr19	16870217	16870217	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcggcccgtggatggcttcAccctcctggccattgcccac	12	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	16870217	16870217	A	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.1951	p.T651P	0.293	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	19	0	0	9	7	43.75	-	-	-	C	16870217	A	C	16870217	3	2	232	1	0	0	0	0	1	0	0	0	10854	159	6	5	1556	5	NWD1	19	16870217	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	238948	16870217	42258766	2571	18097										
CPAMD8	0	genome.wustl.edu	37	chr19	17036038	17036038	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtcggtggtctctctctccAcctcagggctgagctgctgg	13	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	17036038	17036038	A	C	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.3656	p.V1219G	1.000	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	114	0	0	145	31	17.51	-	-	-	C	17036038	A	C	17036038	3	2	232	1	0	0	0	0	1	0	0	0	3825	159	6	5	2210	5	CPAMD8	19	17036038	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	165821	17036038	42092945	2572	18098										
HAUS8	0	genome.wustl.edu	37	chr19	17179895	17179895	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgggactcaatcactcttccAcctgtggggacacactgttg	10	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	17179895	17179895	A	C	SNP	HAUS8	ENST00000253669	human	ensembl	69_37n	-1	known	silent	c.93	p.G31	0.995	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351	14	0	0	19	5	20	-	-	-	C	17179895	A	C	17179895	2	2	232	1	0	0	0	0	0	0	0	1	7023	173	6	5		5	HAUS8	19	17179895	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	143857	17179895	41949088	2573	18099										
PDE4C	0	genome.wustl.edu	37	chr19	18331221	18331221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccacctcaccttgttggAggccatctcccccaccgagt	8	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	18331221	18331221	A	G	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	missense	c.700	p.S234P	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	60	0	0	26	4	12.9	-	-	-	G	18331221	A	G	18331221	3	3	232	1	0	0	0	0	1	0	0	0	11714	304	11	5	1478	5	PDE4C	19	18331221	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1151326	18331221	40797762	2574	18100										
POP4	0	genome.wustl.edu	37	chr19	30106350	30106350	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggacactccctaaatgtccAcctttcagtgaagagatagt	8	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	30106350	30106350	A	C	SNP	POP4	ENST00000591824	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POP4	HGNC	ENSG00000105171	19	0	0	17	8	32	-	-	-	C	30106350	A	C	30106350	1	2	232	0	1	0	0	0	0	0	0	0	12326	174	6	5		5	POP4	19	30106350	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11775129	30106350	29022633	2575	18101										
TSHZ3	0	genome.wustl.edu	37	chr19	31770007	31770007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccccgtctcgttcatgtgcAccgtcaactccaccagggtg	10	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	31770007	31770007	A	C	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.692	p.V231G	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	231	2	0.85	234	38	13.87	-	-	-	C	31770007	A	C	31770007	3	2	232	1	0	0	0	0	1	0	0	0	16721	159	6	5	2557	5	TSHZ3	19	31770007	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1663657	31770007	27358976	2576	18102										
ATP4A	0	genome.wustl.edu	37	chr19	36050957	36050957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcggtcgcccgtgttcaccAccaggccctgcacggtgcct	12	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	36050957	36050957	A	C	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.806	p.V269G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	121	0	0	69	20	22.22	-	-	-	C	36050957	A	C	36050957	3	2	232	1	0	0	0	0	1	0	0	0	1149	159	6	5	2365	5	ATP4A	19	36050957	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4280950	36050957	23078026	2577	18103										
NPHS1	0	genome.wustl.edu	37	chr19	36334456	36334456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccacagaacccccgacgttcAcctcagtggggtcctggagg	12	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	36334456	36334456	A	C	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	missense	c.2252	p.V751G	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	104	0	0	61	17	21.79	-	-	-	C	36334456	A	C	36334456	3	2	232	1	0	0	0	0	1	0	0	0	10654	159	6	5	1525	5	NPHS1	19	36334456	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	283499	36334456	22794527	2578	18104										
ZFP14	0	genome.wustl.edu	37	chr19	36831888	36831888	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacattcatagggtttctcAccagtgtgaattctctgatg	8	8	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	36831888	36831888	A	C	SNP	ZFP14	ENST00000270001	human	ensembl	69_37n	-1	known	silent	c.840	p.G280	0.606	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP14	HGNC	ENSG00000142065	265	0	0	209	35	14.29	-	-	-	C	36831888	A	C	36831888	2	2	232	1	0	0	0	0	0	0	0	1	17735	146	6	5		5	ZFP14	19	36831888	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	497432	36831888	22297095	2579	18105										
RYR1	0	genome.wustl.edu	37	chr19	38948813	38948813	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaggccacccacttgcgggTgggctgggccctcaccgagg	15	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	38948813	38948813	T	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2048	p.V683G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	209	2	0.95	137	36	20.57	-	-	-	G	38948813	T	G	38948813	3	3	232	1	0	0	0	0	1	0	0	0	13854	1696	59	5	2118	5	RYR1	19	38948813	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2116925	38948813	20180170	2580	18106										
SUPT5H	0	genome.wustl.edu	37	chr19	39962019	39962019	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgaacatgtacgggaaggTggtgactgtcagacatcagg	15	7	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	39962019	39962019	T	G	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.1700	p.V567G	1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	135	1	0.74	89	16	15.24	-	-	-	G	39962019	T	G	39962019	3	3	232	1	0	0	0	0	1	0	0	0	15490	1696	59	5	1770	5	SUPT5H	19	39962019	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1013206	39962019	19166964	2581	18107										
LGALS13	0	genome.wustl.edu	37	chr19	40095243	40095243	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actctcaatactctggcaggTgccatacaaactgcctgtgt	8	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	40095243	40095243	T	G	SNP	LGALS13	ENST00000221797	human	ensembl	69_37n	1	known	missense	c.17	p.V6G	0.038	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS13	HGNC	ENSG00000105198	122	1	0.81	108	35	24.48	-	-	-	G	40095243	T	G	40095243	3	3	232	1	0	0	0	0	1	0	0	0	8794	1710	59	5	23	5	LGALS13	19	40095243	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	133224	40095243	19033740	2582	18108										
FBL	0	genome.wustl.edu	37	chr19	40331154	40331154	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaccagaatggaagcctccAcctataaaggagaggtacaa	9	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	40331154	40331154	A	C	SNP	FBL	ENST00000221801	human	ensembl	69_37n	-1	known	silent	c.183	p.G61	0.890	pirsf_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202	457	2	0.43	504	66	11.52	-	-	-	C	40331154	A	C	40331154	2	2	232	1	0	0	0	0	0	0	0	1	5742	173	6	5		5	FBL	19	40331154	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	235911	40331154	18797829	2583	18109										
PRX	0	genome.wustl.edu	37	chr19	40902817	40902817	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccggcacagccatctctggcAcctttgggagtttcatctct	9	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	40902817	40902817	A	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.1442	p.V481G	0.015	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	185	0	0	103	13	11.11	-	-	-	C	40902817	A	C	40902817	3	2	232	1	0	0	0	0	1	0	0	0	12722	159	6	5	2947	5	PRX	19	40902817	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	571663	40902817	18226166	2584	18110										
PRX	0	genome.wustl.edu	37	chr19	40902952	40902952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcacttcaggtcccttgggcAccttgacctcgggccctgac	10	16	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	40902952	40902952	A	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.1307	p.V436G	0.604	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	118	1	0.84	49	10	16.95	-	-	-	C	40902952	A	C	40902952	3	2	232	1	0	0	0	0	1	0	0	0	12722	159	6	5	3082	5	PRX	19	40902952	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	135	40902952	18226031	2585	18111										
CYP2B6	0	genome.wustl.edu	37	chr19	41515277	41515277	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccccaaggacctcatcgacAcctacctgctccacatggaa	6	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	41515277	41515277	A	C	SNP	CYP2B6	ENST00000324071	human	ensembl	69_37n	1	known	missense	c.799	p.T267P	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408	413	3	0.72	460	67	12.67	-	-	-	C	41515277	A	C	41515277	3	2	232	1	0	0	0	0	1	0	0	0	4195	159	6	5	817	5	CYP2B6	19	41515277	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	612325	41515277	17613706	2586	18112										
CYP2A13	0	genome.wustl.edu	37	chr19	41594488	41594488	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaagctgcctccgggacccAccccattgcccttcattgga	10	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	41594488	41594488	A	C	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.112	p.T38P	0.721	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	174	0	0	137	24	14.91	-	-	-	C	41594488	A	C	41594488	3	2	232	1	0	0	0	0	1	0	0	0	4192	159	6	5	114	5	CYP2A13	19	41594488	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	79211	41594488	17534495	2587	18113										
CYP2F1	0	genome.wustl.edu	37	chr19	41622394	41622394	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggctccatgtacacagtgcAcctgggacccaggcgggtgg	15	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	41622394	41622394	A	C	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	1	known	missense	c.206	p.H69P	0.052	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	204	1	0.48	299	47	13.39	-	-	-	C	41622394	A	C	41622394	3	2	232	1	0	0	0	0	1	0	0	0	4202	159	6	5	212	5	CYP2F1	19	41622394	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	27906	41622394	17506589	2588	18114										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41810140	41810140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgccaataccagcacccccAccgtcagcagctacagccct	7	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	41810140	41810140	A	C	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.2236	p.T746P	0.424	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	139	0	0	116	23	16.55	-	-	-	C	41810140	A	C	41810140	3	2	232	1	0	0	0	0	1	0	0	0	7325	159	6	5	2286	5	HNRNPUL1	19	41810140	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	187746	41810140	17318843	2589	18115										
CEACAM7	0	genome.wustl.edu	37	chr19	42187731	42187731	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacagcggacattcagggTgactgggtcactgcggctgg	15	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42187731	42187731	T	G	SNP	CEACAM7	ENST00000006724	human	ensembl	69_37n	-1	known	missense	c.691	p.T231P	0.732	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CEACAM7	HGNC	ENSG00000007306	287	1	0.35	227	31	12.02	-	-	-	G	42187731	T	G	42187731	3	3	232	1	0	0	0	0	1	0	0	0	3226	1696	59	5	114	5	CEACAM7	19	42187731	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	377591	42187731	16941252	2590	18116										
CEACAM5	0	genome.wustl.edu	37	chr19	42222138	42222138	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccatgcagcctctaacccAcctgcacagtattcttggct	7	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42222138	42222138	A	C	SNP	CEACAM5	ENST00000398599	human	ensembl	69_37n	1	novel	missense	c.1315	p.T439P	0.002	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEACAM5	HGNC	ENSG00000105388	131	0	0	101	15	12.93	-	-	-	C	42222138	A	C	42222138	3	2	232	1	0	0	0	0	1	0	0	0	3224	146	6	5	1351	5	CEACAM5	19	42222138	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	34407	42222138	16906845	2591	18117										
DMRTC2	0	genome.wustl.edu	37	chr19	42354751	42354751	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctggatctccctgcttcAcccctgtggcccaccaggtg	10	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42354751	42354751	A	C	SNP	DMRTC2	ENST00000269945	human	ensembl	69_37n	1	known	missense	c.974	p.H325P	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025	86	0	0	88	22	20	-	-	-	C	42354751	A	C	42354751	3	2	232	1	0	0	0	0	1	0	0	0	4627	159	6	5	1000	5	DMRTC2	19	42354751	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	132613	42354751	16774232	2592	18118										
MEGF8	0	genome.wustl.edu	37	chr19	42837885	42837885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgccagtctaagtgggagcAcccgacctccgcccatcgaa	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42837885	42837885	A	C	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.316	p.T106P	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	113	1	0.86	83	19	18.45	-	-	-	C	42837885	A	C	42837885	3	2	232	1	0	0	0	0	1	0	0	0	9534	159	6	5	322	5	MEGF8	19	42837885	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	483134	42837885	16291098	2593	18119										
LIPE	0	genome.wustl.edu	37	chr19	42912250	42912250	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatggcaaagcggccgctggTgaagagagagctggcggcca	18	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42912250	42912250	T	G	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	missense	c.1534	p.T512P	1.000	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	105	1	0.93	62	29	31.52	-	-	-	G	42912250	T	G	42912250	3	3	232	1	0	0	0	0	1	0	0	0	8877	1696	59	5	1724	5	LIPE	19	42912250	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	74365	42912250	16216733	2594	18120										
LIPE	0	genome.wustl.edu	37	chr19	42931008	42931008	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcaccctttggatgtaaggTgattgctgtggtgcgggctt	15	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	42931008	42931008	T	G	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	silent	c.294	p.S98	0.857	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	172	0	0	139	22	13.66	-	-	-	G	42931008	T	G	42931008	2	3	232	1	0	0	0	0	0	0	0	1	8877	1683	59	5		5	LIPE	19	42931008	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	18758	42931008	16197975	2595	18121										
CEACAM1	0	genome.wustl.edu	37	chr19	43026091	43026091	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacaggtgacattcaaggTgactgggtcactgcggttcg	13	10	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43026091	43026091	T	G	SNP	CEACAM1	ENST00000161559	human	ensembl	69_37n	-1	known	missense	c.688	p.T230P	0.001	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM1	HGNC	ENSG00000079385	198	1	0.5	189	32	14.48	-	-	-	G	43026091	T	G	43026091	3	3	232	1	0	0	0	0	1	0	0	0	3216	1696	59	5	1017	5	CEACAM1	19	43026091	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	95083	43026091	16102892	2596	18122										
CEACAM1	0	genome.wustl.edu	37	chr19	43031415	43031415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atccactctttcccctttgtAccagctgtagccaaaaagtt	5	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43031415	43031415	A	C	SNP	CEACAM1	ENST00000161559	human	ensembl	69_37n	-1	known	missense	c.202	p.Y68D	0.663	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM1	HGNC	ENSG00000079385	281	1	0.35	195	30	13.27	-	-	-	C	43031415	A	C	43031415	3	2	232	1	0	0	0	0	1	0	0	0	3216	391	14	5	1507	5	CEACAM1	19	43031415	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5324	43031415	16097568	2597	18123										
CEACAM8	0	genome.wustl.edu	37	chr19	43093816	43093816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgagtctcaggttcacaggTgaaggccacagcatccttgt	11	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43093816	43093816	T	G	SNP	CEACAM8	ENST00000244336	human	ensembl	69_37n	-1	known	missense	c.496	p.T166P	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM8	HGNC	ENSG00000124469	428	2	0.46	313	38	10.8	-	-	-	G	43093816	T	G	43093816	3	3	232	1	0	0	0	0	1	0	0	0	3227	1696	59	5	565	5	CEACAM8	19	43093816	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	62401	43093816	16035167	2598	18124										
PSG3	0	genome.wustl.edu	37	chr19	43233945	43233945	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacagaggacattcagggTgactgggtaactgcggatgc	14	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43233945	43233945	T	G	SNP	PSG3	ENST00000327495	human	ensembl	69_37n	-1	known	missense	c.973	p.T325P	0.283	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG3	HGNC	ENSG00000221826	306	0	0	232	43	15.64	-	-	-	G	43233945	T	G	43233945	3	3	232	1	0	0	0	0	1	0	0	0	12736	1696	59	5	325	5	PSG3	19	43233945	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	140129	43233945	15895038	2599	18125										
PSG8	0	genome.wustl.edu	37	chr19	43259155	43259155	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacagaggacattcagggTgactgggtaactgcggatgc	14	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43259155	43259155	T	G	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.973	p.T325P	0.317	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	348	2	0.57	224	55	19.57	-	-	-	G	43259155	T	G	43259155	3	3	232	1	0	0	0	0	1	0	0	0	12741	1696	59	5	336	5	PSG8	19	43259155	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	25210	43259155	15869828	2600	18126										
PSG8	0	genome.wustl.edu	37	chr19	43262169	43262169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacggaggagattcagggTgaatgggtcactgcggctgg	17	8	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43262169	43262169	T	G	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.694	p.T232P	0.419	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	691	4	0.57	454	71	13.52	-	-	-	G	43262169	T	G	43262169	3	3	232	1	0	0	0	0	1	0	0	0	12741	1696	59	5	619	5	PSG8	19	43262169	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3014	43262169	15866814	2601	18127										
PSG6	0	genome.wustl.edu	37	chr19	43420346	43420346	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgctttatgatgtgtaaggTgtaggatcctgcatcctcct	10	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43420346	43420346	T	G	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.358	p.T120P	0.008	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	546	0	0	532	74	12.21	-	-	-	G	43420346	T	G	43420346	3	3	232	1	0	0	0	0	1	0	0	0	12739	1696	59	5	1008	5	PSG6	19	43420346	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	158177	43420346	15708637	2602	18128										
PSG7	0	genome.wustl.edu	37	chr19	43439571	43439571	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacggtataaggtgaaggTgaaacgtccagttactcctc	10	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43439571	43439571	T	G	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	missense	c.415	p.T139P	0.001	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	626	1	0.16	609	77	11.21	-	-	-	G	43439571	T	G	43439571	3	3	232	1	0	0	0	0	1	0	0	0	12740	1696	59	5	864	5	PSG7	19	43439571	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19225	43439571	15689412	2603	18129										
PSG11	0	genome.wustl.edu	37	chr19	43523090	43523090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggctctgaccattcatccAccacaggtagcttgcgtccg	10	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43523090	43523090	A	C	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	missense	c.541	p.W181G	0.115	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	626	2	0.32	487	70	12.57	-	-	-	C	43523090	A	C	43523090	3	2	232	1	0	0	0	0	1	0	0	0	12734	159	6	5	478	5	PSG11	19	43523090	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83519	43523090	15605893	2604	18130										
PSG2	0	genome.wustl.edu	37	chr19	43579521	43579521	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacggaggagattcagggTgactgggtcactgcggctgg	17	9	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43579521	43579521	T	G	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	missense	c.694	p.T232P	0.003	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG2	HGNC	ENSG00000242221	552	3	0.54	382	59	13.35	-	-	-	G	43579521	T	G	43579521	3	3	232	1	0	0	0	0	1	0	0	0	12735	1696	59	5	325	5	PSG2	19	43579521	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	56431	43579521	15549462	2605	18131										
PSG5	0	genome.wustl.edu	37	chr19	43688949	43688949	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacggtataagttgaaggTgaaatatccagttactcctc	8	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43688949	43688949	T	G	SNP	PSG5	ENST00000342951	human	ensembl	69_37n	-1	known	missense	c.415	p.T139P	0.021	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG5	HGNC	ENSG00000204941	584	1	0.17	554	73	11.62	-	-	-	G	43688949	T	G	43688949	3	3	232	1	0	0	0	0	1	0	0	0	12738	1696	59	5	608	5	PSG5	19	43688949	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	109428	43688949	15440034	2606	18132										
PSG5	0	genome.wustl.edu	37	chr19	43689027	43689027	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatcctgcgtcttcccgggTgacattctggatcagcaggg	14	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43689027	43689027	T	G	SNP	PSG5	ENST00000342951	human	ensembl	69_37n	-1	known	missense	c.337	p.T113P	0.476	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG5	HGNC	ENSG00000204941	804	3	0.37	739	96	11.48	-	-	-	G	43689027	T	G	43689027	3	3	232	1	0	0	0	0	1	0	0	0	12738	1696	59	5	686	5	PSG5	19	43689027	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	78	43689027	15439956	2607	18133										
PSG4	0	genome.wustl.edu	37	chr19	43708053	43708053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcacggtgtaaggtgaaggTgaaatgtccagttactcctc	11	9	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	43708053	43708053	T	G	SNP	PSG4	ENST00000405312	human	ensembl	69_37n	-1	known	missense	c.415	p.T139P	0.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG4	HGNC	ENSG00000243137	608	1	0.16	596	82	12.09	-	-	-	G	43708053	T	G	43708053	3	3	232	1	0	0	0	0	1	0	0	0	12737	1696	59	5	864	5	PSG4	19	43708053	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19026	43708053	15420930	2608	18134										
ZNF234	0	genome.wustl.edu	37	chr19	44660426	44660426	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agacaagatccaaagtgaggTggagactgttccagaagcag	13	7	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	44660426	44660426	T	G	SNP	ZNF234	ENST00000426739	human	ensembl	69_37n	1	known	missense	c.257	p.V86G	0.058	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	211	0	0	207	32	13.33	-	-	-	G	44660426	T	G	44660426	3	3	232	1	0	0	0	0	1	0	0	0	17883	1696	59	5	271	5	ZNF234	19	44660426	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	952373	44660426	14468557	2609	18135										
ZNF229	0	genome.wustl.edu	37	chr19	44934529	44934529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggcgtagatgctccttcccAcccttgatggggagcagcat	12	13	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	44934529	44934529	A	C	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.427	p.W143G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	146	1	0.67	93	31	24.6	-	-	-	C	44934529	A	C	44934529	3	2	232	1	0	0	0	0	1	0	0	0	17878	159	6	5	2054	5	ZNF229	19	44934529	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	274103	44934529	14194454	2610	18136										
PVR	0	genome.wustl.edu	37	chr19	45157231	45157231	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accttggccagaatgaggccAccctgacctgcgatgctcgc	11	15	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	45157231	45157231	A	C	SNP	PVR	ENST00000425690	human	ensembl	69_37n	1	known	missense	c.787	p.T263P	0.000	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVR	HGNC	ENSG00000073008	89	0	0	59	22	26.83	-	-	-	C	45157231	A	C	45157231	3	2	232	1	0	0	0	0	1	0	0	0	12920	159	6	5	801	5	PVR	19	45157231	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	222702	45157231	13971752	2611	18137										
PVR	0	genome.wustl.edu	37	chr19	45161048	45161048	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaccatgggtcccctgccAccctttgctgtggcccaggg	13	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	45161048	45161048	A	C	SNP	PVR	ENST00000425690	human	ensembl	69_37n	1	known	silent	c.861	p.P287	0.006	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVR	HGNC	ENSG00000073008	52	0	0	36	8	17.78	-	-	-	C	45161048	A	C	45161048	2	2	232	1	0	0	0	0	0	0	0	1	12920	146	6	5		5	PVR	19	45161048	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3817	45161048	13967935	2612	18138										
CEACAM19	0	genome.wustl.edu	37	chr19	45179602	45179602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgctgggatcctggcggccAccatcattggatctcttgct	11	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	45179602	45179602	A	C	SNP	CEACAM19	ENST00000403660	human	ensembl	69_37n	1	known	missense	c.484	p.T162P	0.342	NULL	pfam_Ig_V-set	-	no_errors	CEACAM19	HGNC	ENSG00000186567	126	1	0.78	170	21	10.94	-	-	-	C	45179602	A	C	45179602	3	2	232	1	0	0	0	0	1	0	0	0	3219	159	6	5	494	5	CEACAM19	19	45179602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	18554	45179602	13949381	2613	18139										
PVRL2	0	genome.wustl.edu	37	chr19	45377235	45377235	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctcggccgtactgatgccAccctgagctgtgacgtccgc	11	16	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	45377235	45377235	A	C	SNP	PVRL2	ENST00000252483	human	ensembl	69_37n	1	known	missense	c.838	p.T280P	0.994	smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL2	HGNC	ENSG00000130202	110	1	0.89	90	24	20.87	-	-	-	C	45377235	A	C	45377235	3	2	232	1	0	0	0	0	1	0	0	0	12923	159	6	5	852	5	PVRL2	19	45377235	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	197633	45377235	13751748	2614	18140										
ERCC2	0	genome.wustl.edu	37	chr19	45858035	45858035	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccatgtactggtagctggTgaagaaggccacgatgccat	12	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	45858035	45858035	T	G	SNP	ERCC2	ENST00000391945	human	ensembl	69_37n	-1	known	missense	c.1618	p.T540P	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884	126	1	0.79	60	13	17.81	-	-	-	G	45858035	T	G	45858035	3	3	232	1	0	0	0	0	1	0	0	0	5250	1696	59	5	692	5	ERCC2	19	45858035	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	480800	45858035	13270948	2615	18141										
FBXO46	0	genome.wustl.edu	37	chr19	46215466	46215466	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcgtctgggccgggcgcagTggccggggagtcggccgggg	22	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	46215466	46215466	T	G	SNP	FBXO46	ENST00000317683	human	ensembl	69_37n	-1	known	missense	c.1288	p.T430P	0.009	NULL	superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO46	HGNC	ENSG00000177051	19	0	0	14	6	30	-	-	-	G	46215466	T	G	46215466	3	3	232	1	0	0	0	0	1	0	0	0	5801	1696	59	5	527	5	FBXO46	19	46215466	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	357431	46215466	12913517	2616	18142										
IGFL2	0	genome.wustl.edu	37	chr19	46664008	46664008	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaatgtggtcccccctgcAccttctggccctgctttgag	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	46664008	46664008	A	C	SNP	IGFL2	ENST00000434646	human	ensembl	69_37n	1	known	missense	c.244	p.T82P	0.040	NULL	NULL	-	no_errors	IGFL2	HGNC	ENSG00000204866	269	0	0	330	55	14.14	-	-	-	C	46664008	A	C	46664008	3	2	232	1	0	0	0	0	1	0	0	0	7641	159	6	5	277	5	IGFL2	19	46664008	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	448542	46664008	12464975	2617	18143										
PNMAL1	0	genome.wustl.edu	37	chr19	46973466	46973466	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatgctttcagcatcacccAcctcaggatcctccaagtta	5	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	46973466	46973466	A	C	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	missense	c.827	p.V276G	0.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	150	1	0.66	106	28	20.74	-	-	-	C	46973466	A	C	46973466	3	2	232	1	0	0	0	0	1	0	0	0	12231	159	6	5	522	5	PNMAL1	19	46973466	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	309458	46973466	12155517	2618	18144										
PNMAL1	0	genome.wustl.edu	37	chr19	46974253	46974253	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtccacttccattcccctgcAccaatcctccagaaggttca	5	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	46974253	46974253	A	C	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	missense	c.40	p.C14G	1.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	73	0	0	49	9	15.52	-	-	-	C	46974253	A	C	46974253	3	2	232	1	0	0	0	0	1	0	0	0	12231	159	6	5	1309	5	PNMAL1	19	46974253	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	787	46974253	12154730	2619	18145										
DHX34	0	genome.wustl.edu	37	chr19	47884194	47884194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctccaccctgtccccccAccccacaaaggggggctacg	9	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	47884194	47884194	A	C	SNP	DHX34	ENST00000328771	human	ensembl	69_37n	1	known	missense	c.3104	p.H1035P	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815	37	0	0	28	17	37.78	-	-	-	C	47884194	A	C	47884194	3	2	232	1	0	0	0	0	1	0	0	0	4543	159	6	5	3158	5	DHX34	19	47884194	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	909941	47884194	11244789	2620	18146										
SEPW1	0	genome.wustl.edu	37	chr19	48284389	48284389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcgagggaactccccaggccAccgggttctttgaagtgatg	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	48284389	48284389	A	C	SNP	SEPW1	ENST00000509570	human	ensembl	69_37n	1	known	missense	c.136	p.T46P	0.998	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_errors	SEPW1	HGNC	ENSG00000178980	222	0	0	209	31	12.92	-	-	-	C	48284389	A	C	48284389	3	2	232	1	0	0	0	0	1	0	0	0	14160	159	6	5	147	5	SEPW1	19	48284389	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	400195	48284389	10844594	2621	18147										
FUT1	0	genome.wustl.edu	37	chr19	49253970	49253970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgcgcctcttcccgaaggTggtcgtgcagggtgaactct	13	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	49253970	49253970	T	G	SNP	FUT1	ENST00000310160	human	ensembl	69_37n	-1	known	missense	c.569	p.H190P	0.290	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	55	0	0	46	13	21.67	-	-	-	G	49253970	T	G	49253970	3	3	232	1	0	0	0	0	1	0	0	0	6150	1696	59	5	532	5	FUT1	19	49253970	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	969581	49253970	9875013	2622	18148										
SLC6A16	0	genome.wustl.edu	37	chr19	49797123	49797123	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcctgaagaaagagaaggTgtcctggagtggagtaatga	14	4	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	49797123	49797123	T	G	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.1579	p.T527P	0.851	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	221	0	0	231	33	12.5	-	-	-	G	49797123	T	G	49797123	3	3	232	1	0	0	0	0	1	0	0	0	14768	1696	59	5	647	5	SLC6A16	19	49797123	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	543153	49797123	9331860	2623	18149										
CD37	0	genome.wustl.edu	37	chr19	49842126	49842126	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagctcagcaggcttggacAcctggcgcggtccagacaca	12	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	49842126	49842126	A	C	SNP	CD37	ENST00000323906	human	ensembl	69_37n	1	known	missense	c.617	p.H206P	0.001	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD37	HGNC	ENSG00000104894	79	0	0	41	16	28.07	-	-	-	C	49842126	A	C	49842126	3	2	232	1	0	0	0	0	1	0	0	0	3037	159	6	5	639	5	CD37	19	49842126	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	45003	49842126	9286857	2624	18150										
CD37	0	genome.wustl.edu	37	chr19	49842690	49842690	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgatctggccccgcccccAcccgcgatcggccctaaatc	10	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	49842690	49842690	A	C	SNP	CD37	ENST00000535669	human	ensembl	69_37n	1	known	missense	c.788	p.H263P	0.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD37	HGNC	ENSG00000104894	107	1	0.9	72	14	16.28	-	-	-	C	49842690	A	C	49842690	3	2	232	1	0	0	0	0	1	0	0	0	3037	174	6	5		5	CD37	19	49842690	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	564	49842690	9286293	2625	18151										
RCN3	0	genome.wustl.edu	37	chr19	50031833	50031833	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatggccaggggagggtgcAccaggcggcccccctgagcg	17	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	50031833	50031833	A	C	SNP	RCN3	ENST00000270645	human	ensembl	69_37n	1	known	missense	c.104	p.H35P	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN3	HGNC	ENSG00000142552	129	1	0.76	72	23	23.71	-	-	-	C	50031833	A	C	50031833	3	2	232	1	0	0	0	0	1	0	0	0	13264	159	6	5	106	5	RCN3	19	50031833	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	189143	50031833	9097150	2626	18152										
SIGLEC9	0	genome.wustl.edu	37	chr19	51628889	51628889	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaacatcctcatcccaggcAccctggagtccggctgcccc	8	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	51628889	51628889	A	C	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	missense	c.457	p.T153P	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	124	0	0	111	19	14.39	-	-	-	C	51628889	A	C	51628889	3	2	232	1	0	0	0	0	1	0	0	0	14404	159	6	5	463	5	SIGLEC9	19	51628889	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1597056	51628889	7500094	2627	18153										
SIGLEC7	0	genome.wustl.edu	37	chr19	51645822	51645822	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acccagttcatggctactggTtccgggcagggaatgatata	12	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	51645822	51645822	T	G	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.196	p.F66V	0.023	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	146	1	0.68	107	20	15.5	-	-	-	G	51645822	T	G	51645822	3	3	232	1	0	0	0	0	1	0	0	0	14402	1725	60	5	198	5	SIGLEC7	19	51645822	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	16933	51645822	7483161	2628	18154										
LIM2	0	genome.wustl.edu	37	chr19	51883785	51883785	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaacgtcatgagcactgccAcccagcccaggatgtaggac	11	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	51883785	51883785	A	C	SNP	LIM2	ENST00000221973	human	ensembl	69_37n	-1	known	missense	c.560	p.V187G	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22_EMP_MP20	pfam_PMP22/EMP/MP20/Claudin,prints_LMIP,prints_PMP22_EMP_MP20	-	no_errors	LIM2	HGNC	ENSG00000105370	93	0	0	139	27	16.17	-	-	-	C	51883785	A	C	51883785	3	2	232	1	0	0	0	0	1	0	0	0	8850	159	6	5	95	5	LIM2	19	51883785	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	237963	51883785	7245198	2629	18155										
SIGLEC14	0	genome.wustl.edu	37	chr19	52149091	52149091	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgagctccttggcgtttcAcctgacaggtgaggttggtg	14	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	52149091	52149091	A	C	SNP	SIGLEC14	ENST00000360844	human	ensembl	69_37n	-1	known	missense	c.644	p.V215G	0.630	pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC14	HGNC	ENSG00000254415	96	0	0	119	19	13.67	-	-	-	C	52149091	A	C	52149091	3	2	232	1	0	0	0	0	1	0	0	0	14398	159	6	5	566	5	SIGLEC14	19	52149091	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	265306	52149091	6979892	2630	18156										
FPR1	0	genome.wustl.edu	37	chr19	52249649	52249649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaaccggatgatgcctctcAccgtcaacatggcaacggcc	10	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	52249649	52249649	A	C	SNP	FPR1	ENST00000304748	human	ensembl	69_37n	-1	known	missense	c.599	p.V200G	0.016	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_Anphylx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051	195	1	0.51	203	25	10.96	-	-	-	C	52249649	A	C	52249649	3	2	232	1	0	0	0	0	1	0	0	0	6086	159	6	5	457	5	FPR1	19	52249649	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	100558	52249649	6879334	2631	18157										
FPR2	0	genome.wustl.edu	37	chr19	52272866	52272866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gactgatccactccctgcccAccagtctggagagggccctg	11	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	52272866	52272866	A	C	SNP	FPR2	ENST00000340023	human	ensembl	69_37n	1	known	missense	c.955	p.T319P	0.023	prints_Frt_met_rcpt,prints_DEZorph_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_P2_purnocptor,prints_DEZorph_rcpt	-	no_errors	FPR2	HGNC	ENSG00000171049	139	1	0.71	93	18	16.22	-	-	-	C	52272866	A	C	52272866	3	2	232	1	0	0	0	0	1	0	0	0	6087	159	6	5	957	5	FPR2	19	52272866	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	23217	52272866	6856117	2632	18158										
FPR3	0	genome.wustl.edu	37	chr19	52327150	52327150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatgggcttgtgatctgggTggctggattccggatgacac	15	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	52327150	52327150	T	G	SNP	FPR3	ENST00000339223	human	ensembl	69_37n	1	known	missense	c.149	p.V50G	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	FPR3	HGNC	ENSG00000187474	289	1	0.34	233	28	10.73	-	-	-	G	52327150	T	G	52327150	3	3	232	1	0	0	0	0	1	0	0	0	6088	1696	59	5	151	5	FPR3	19	52327150	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	54284	52327150	6801833	2633	18159										
ZNF649	0	genome.wustl.edu	37	chr19	52394001	52394001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctgtggaaggattttccAccttcactgaatccccccgt	8	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	52394001	52394001	A	C	SNP	ZNF649	ENST00000354957	human	ensembl	69_37n	-1	known	missense	c.1388	p.V463G	0.532	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093	366	0	0	383	54	12.33	-	-	-	C	52394001	A	C	52394001	3	2	232	1	0	0	0	0	1	0	0	0	18160	159	6	5	133	5	ZNF649	19	52394001	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	66851	52394001	6734982	2634	18160										
ZNF808	0	genome.wustl.edu	37	chr19	53057655	53057655	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaagaccttcagccgcaggTcatcccttctatgccatcgt	8	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	53057655	53057655	T	G	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.1279	p.S427A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	288	1	0.35	226	28	10.98	-	-	-	G	53057655	T	G	53057655	3	3	232	1	0	0	0	0	1	0	0	0	18266	1667	58	5	1496	5	ZNF808	19	53057655	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	663654	53057655	6071328	2635	18161										
ZNF808	0	genome.wustl.edu	37	chr19	53058667	53058667	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcttttaatgaacaatcacAcctttcacgtcatcatagaa	5	10	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	53058667	53058667	A	C	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.2291	p.H764P	0.013	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	404	0	0	372	46	10.98	-	-	-	C	53058667	A	C	53058667	3	2	232	1	0	0	0	0	1	0	0	0	18266	159	6	5	2508	5	ZNF808	19	53058667	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1012	53058667	6070316	2636	18162										
ZNF611	0	genome.wustl.edu	37	chr19	53217346	53217346	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaagggttcaggcatttccActctgccaatgagaattcta	9	9	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	53217346	53217346	A	C	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.112	p.W38G	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	516	3	0.58	462	61	11.64	-	-	-	C	53217346	A	C	53217346	3	2	232	1	0	0	0	0	1	0	0	0	18133	159	6	5	2013	5	ZNF611	19	53217346	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	158679	53217346	5911637	2637	18163										
VSTM1	0	genome.wustl.edu	37	chr19	54561727	54561727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttgtacccagagtcgttcAccttgcgcagcacaaatgtc	9	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	54561727	54561727	A	C	SNP	VSTM1	ENST00000338372	human	ensembl	69_37n	-1	known	missense	c.188	p.V63G	0.000	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM1	HGNC	ENSG00000189068	118	0	0	167	28	14.29	-	-	-	C	54561727	A	C	54561727	3	2	232	1	0	0	0	0	1	0	0	0	17325	159	6	5	550	5	VSTM1	19	54561727	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1344381	54561727	4567256	2638	18164										
NDUFA3	0	genome.wustl.edu	37	chr19	54610301	54610301	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcatgtgtgtgatcagaggTgggaacaagtagacggtggc	17	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	54610301	54610301	T	G	SNP	NDUFA3	ENST00000484360	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NDUFA3	HGNC	ENSG00000170906	128	1	0.77	111	26	18.98	-	-	-	G	54610301	T	G	54610301	1	3	232	0	1	0	0	0	0	0	0	0	10337	1711	59	5		5	NDUFA3	19	54610301	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	48574	54610301	4518682	2639	18165										
LILRB2	0	genome.wustl.edu	37	chr19	54782146	54782146	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctccaggggctcactggggTgagacagcaggtaggggtcg	19	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	54782146	54782146	T	G	SNP	LILRB2	ENST00000391749	human	ensembl	69_37n	-1	known	missense	c.1226	p.H409P	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB2	HGNC	ENSG00000131042	75	0	0	67	23	25.56	-	-	-	G	54782146	T	G	54782146	3	3	232	1	0	0	0	0	1	0	0	0	8846	1696	59	5	602	5	LILRB2	19	54782146	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	171845	54782146	4346837	2640	18166										
LILRA2	0	genome.wustl.edu	37	chr19	55086285	55086285	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctccagtgtgtctcacaggTggcatttgacggcttcattc	10	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	55086285	55086285	T	G	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	missense	c.440	p.V147G	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	191	0	0	85	21	19.63	-	-	-	G	55086285	T	G	55086285	3	3	232	1	0	0	0	0	1	0	0	0	8840	1696	59	5	454	5	LILRA2	19	55086285	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	304139	55086285	4042698	2641	18167										
NLRP7	0	genome.wustl.edu	37	chr19	55450430	55450430	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgaacggggccaccaccAccttcgccagctcctcctcc	7	21	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	55450430	55450430	A	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1841	p.V614G	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	123	1	0.81	71	16	18.39	-	-	-	C	55450430	A	C	55450430	3	2	232	1	0	0	0	0	1	0	0	0	10554	159	6	5	1388	5	NLRP7	19	55450430	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	364145	55450430	3678553	2642	18168										
NLRP7	0	genome.wustl.edu	37	chr19	55452361	55452361	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggattatctatttcttgcAcctgtccgtcctctgtaaaa	6	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	55452361	55452361	A	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.374	p.V125G	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	99	1	1	75	15	16.67	-	-	-	C	55452361	A	C	55452361	3	2	232	1	0	0	0	0	1	0	0	0	10554	159	6	5	2859	5	NLRP7	19	55452361	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1931	55452361	3676622	2643	18169										
TNNI3	0	genome.wustl.edu	37	chr19	55665420	55665420	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctcggtgtcctccttcttcAcctgcttgaggtgggcccgc	11	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	55665420	55665420	A	C	SNP	TNNI3	ENST00000344887	human	ensembl	69_37n	-1	known	missense	c.527	p.V176G	1.000	pfam_Troponin	pfam_Troponin,pfam_Troponin-I_N	-	no_errors	TNNI3	HGNC	ENSG00000129991	51	0	0	66	14	17.5	-	-	-	C	55665420	A	C	55665420	3	2	232	1	0	0	0	0	1	0	0	0	16423	159	6	5	113	5	TNNI3	19	55665420	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	213059	55665420	3463563	2644	18170										
NLRP13	0	genome.wustl.edu	37	chr19	56407313	56407313	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaaaagtcagtgaggtttAcccgagtttctgcagcctgc	11	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	56407313	56407313	A	C	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	nonstop	c.3130	p.*1044E	0.026	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	382	3	0.78	381	50	11.55	-	-	-	C	56407313	A	C	56407313	4	2	232	1	0	0	0	0	0	0	0	0	10547	405	14	5	3	5	NLRP13	19	56407313	Nonstop_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	741893	56407313	2721670	2645	18171										
ZNF582	0	genome.wustl.edu	37	chr19	56901402	56901402	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagacaccactctctccAccatccagggctctttgcct	5	19	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	56901402	56901402	A	C	SNP	ZNF582	ENST00000301310	human	ensembl	69_37n	-1	known	missense	c.200	p.V67G	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	103	0	0	82	21	20.39	-	-	-	C	56901402	A	C	56901402	3	2	232	1	0	0	0	0	1	0	0	0	18110	159	6	5	1361	5	ZNF582	19	56901402	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	494089	56901402	2227581	2646	18172										
ZNF835	0	genome.wustl.edu	37	chr19	57175337	57175337	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggccgctctccggtgtggatCttctggtgctctataagcga	13	11	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	57175337	57175337	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	69_37n	-1	known	silent	c.1230	p.K410	0.206	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	24	0	0	24	6	20	-	-	-	T	57175337	C	T	57175337	2	4	232	1	0	0	0	0	0	0	0	1	18279	912	32	2		2	ZNF835	19	57175337	Silent	SNP	C	TCGA-A8-A0A6-01A-12W-A071-09	273935	57175337	1953646	2647	18173										
PEG3	0	genome.wustl.edu	37	chr19	57327918	57327918	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggaaagtctccccacacAccttacattcgtacattttc	5	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	57327918	57327918	A	C	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1892	p.V631G	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	172	0	0	137	24	14.72	-	-	-	C	57327918	A	C	57327918	3	2	232	1	0	0	0	0	1	0	0	0	11793	159	6	5	2878	5	PEG3	19	57327918	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	152581	57327918	1801065	2648	18174										
ZNF460	0	genome.wustl.edu	37	chr19	57802827	57802827	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagccacaatgagaagaaAcccttcgcatgcagcgaatg	10	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	57802827	57802827	A	C	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.918	p.K306N	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	144	0	0	145	19	11.59	-	-	-	C	57802827	A	C	57802827	3	2	232	1	0	0	0	0	1	0	0	0	18020	40	2	5	928	5	ZNF460	19	57802827	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	474909	57802827	1326156	2649	18175										
ZNF304	0	genome.wustl.edu	37	chr19	57868451	57868451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attctttagccaaagctcccAccttattgagcactggagaa	7	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	57868451	57868451	A	C	SNP	ZNF304	ENST00000443917	human	ensembl	69_37n	1	known	missense	c.1355	p.H452P	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF304	HGNC	ENSG00000131845	239	1	0.41	186	24	11.43	-	-	-	C	57868451	A	C	57868451	3	2	232	1	0	0	0	0	1	0	0	0	17929	159	6	5	1224	5	ZNF304	19	57868451	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	65624	57868451	1260532	2650	18176										
ZNF749	0	genome.wustl.edu	37	chr19	57955119	57955119	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatttcaactccagccaaggTgggaaagacttttgccacca	9	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	57955119	57955119	T	G	SNP	ZNF749	ENST00000334181	human	ensembl	69_37n	1	known	silent	c.603	p.G201	0.746	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	312	1	0.32	177	27	13.04	-	-	-	G	57955119	T	G	57955119	2	3	232	1	0	0	0	0	0	0	0	1	18225	1683	59	5		5	ZNF749	19	57955119	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	86668	57955119	1173864	2651	18177										
ZNF549	0	genome.wustl.edu	37	chr19	58050080	58050080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaaatgctttagacaccgcAccagcctcattcaacaccag	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	58050080	58050080	A	C	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.1708	p.T570P	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	205	1	0.49	118	32	21.33	-	-	-	C	58050080	A	C	58050080	3	2	232	1	0	0	0	0	1	0	0	0	18077	159	6	5	1679	5	ZNF549	19	58050080	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	94961	58050080	1078903	2652	18178										
ZNF530	0	genome.wustl.edu	37	chr19	58118407	58118407	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcttttatccgaaaaacccAcctcattcgacaccagactg	4	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	58118407	58118407	A	C	SNP	ZNF530	ENST00000332854	human	ensembl	69_37n	1	known	missense	c.1514	p.H505P	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647	222	0	0	174	23	11.68	-	-	-	C	58118407	A	C	58118407	3	2	232	1	0	0	0	0	1	0	0	0	18067	159	6	5	1524	5	ZNF530	19	58118407	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	68327	58118407	1010576	2653	18179										
ZSCAN4	0	genome.wustl.edu	37	chr19	58189791	58189791	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctatggtgatgggagcagggTgtatctctcaaccagagcag	14	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	58189791	58189791	T	G	SNP	ZSCAN4	ENST00000318203	human	ensembl	69_37n	1	known	missense	c.820	p.C274G	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN4	HGNC	ENSG00000180532	107	0	0	104	25	19.38	-	-	-	G	58189791	T	G	58189791	3	3	232	1	0	0	0	0	1	0	0	0	18328	1696	59	5	830	5	ZSCAN4	19	58189791	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	71384	58189791	939192	2654	18180										
ZNF551	0	genome.wustl.edu	37	chr19	58198785	58198785	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagctctagcctttttcgacAccagagagttcactctggag	9	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	58198785	58198785	A	C	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.1142	p.H381P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	251	1	0.4	233	27	10.31	-	-	-	C	58198785	A	C	58198785	3	2	232	1	0	0	0	0	1	0	0	0	18079	159	6	5	1104	5	ZNF551	19	58198785	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8994	58198785	930198	2655	18181										
ZSCAN1	0	genome.wustl.edu	37	chr19	58565326	58565326	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccctcgcagccccaaaagAcccttccagtgtagcgtctg	9	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	19	58565326	58565326	A	C	SNP	ZSCAN1	ENST00000282326	human	ensembl	69_37n	1	known	missense	c.1134	p.R378S	0.998	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	20	0	0	14	5	26.32	-	-	-	C	58565326	A	C	58565326	3	2	232	1	0	0	0	0	1	0	0	0	18319	272	10	5	1148	5	ZSCAN1	19	58565326	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	366541	58565326	563657	2656	18182										
ANGPT4	0	genome.wustl.edu	37	chr20	896598	896598	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgcctgctccagctgtttcAcctgctgggtgggcaacttc	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	896598	896598	A	C	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.260	p.V87G	0.146	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	213	1	0.46	284	59	17.05	-	-	-	C	896598	A	C	896598	3	2	232	1	0	0	0	0	1	0	0	0	612	159	6	5	1287	5	ANGPT4	20	896598	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		896598	62128922	2657	18183										
SIRPB1	0	genome.wustl.edu	37	chr20	1551540	1551540	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttgctgcccatcatgctccAcctgacaggtgagcaccaca	8	16	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	1551540	1551540	A	C	SNP	SIRPB1	ENST00000381605	human	ensembl	69_37n	-1	known	missense	c.995	p.V332G	0.998	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	180	1	0.55	114	19	14.29	-	-	-	C	1551540	A	C	1551540	3	2	232	1	0	0	0	0	1	0	0	0	14422	159	6	5	209	5	SIRPB1	20	1551540	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	654942	1551540	61473980	2658	18184										
SIRPB1	0	genome.wustl.edu	37	chr20	1552420	1552420	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagggtccccctgcaaggTgatgtgggctatctcgcaga	14	10	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	1552420	1552420	T	G	SNP	SIRPB1	ENST00000381605	human	ensembl	69_37n	-1	known	missense	c.697	p.T233P	0.016	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	133	1	0.73	114	20	14.81	-	-	-	G	1552420	T	G	1552420	3	3	232	1	0	0	0	0	1	0	0	0	14422	1696	59	5	511	5	SIRPB1	20	1552420	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	880	1552420	61473100	2659	18185										
SIRPB1	0	genome.wustl.edu	37	chr20	1600565	1600565	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaggaaaggactaggaaggTggggccaggaggctggcacg	20	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	1600565	1600565	T	G	SNP	SIRPB1	ENST00000279477	human	ensembl	69_37n	-1	known	missense	c.26	p.H9P	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	58	0	0	89	19	17.43	-	-	-	G	1600565	T	G	1600565	3	3	232	1	0	0	0	0	1	0	0	0	14422	1696	59	5	2327	5	SIRPB1	20	1600565	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	48145	1600565	61424955	2660	18186										
VPS16	0	genome.wustl.edu	37	chr20	2845110	2845110	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcagtttgtaccgacaggTgtgtgtagtgggcagggttg	16	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	2845110	2845110	T	G	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	splice_site	c.1818+2	e18+2	0.986	-	-	-	no_errors	VPS16	HGNC	ENSG00000215305	120	0	0	126	35	21.74	-	-	-	G	2845110	T	G	2845110	5	3	232	1	0	0	0	0	0	0	1	0	17290	1710	59	5	1890	5	VPS16	20	2845110	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1244545	2845110	60180410	2661	18187										
VPS16	0	genome.wustl.edu	37	chr20	2845251	2845251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacaatcaggatgacaatcAccaggaattgggcagcttcc	9	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	2845251	2845251	A	C	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	missense	c.1877	p.H626P	1.000	pfam_Vps16_C,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	152	0	0	148	19	11.38	-	-	-	C	2845251	A	C	2845251	3	2	232	1	0	0	0	0	1	0	0	0	17290	159	6	5	1951	5	VPS16	20	2845251	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	141	2845251	60180269	2662	18188										
PTPRA	0	genome.wustl.edu	37	chr20	3002776	3002776	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagctggccagactttggggTgccttttaccccgatcggca	12	13	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	3002776	3002776	T	G	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.1271	p.V424G	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	120	0	0	54	12	18.18	-	-	-	G	3002776	T	G	3002776	3	3	232	1	0	0	0	0	1	0	0	0	12878	1696	59	5	1284	5	PTPRA	20	3002776	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	157525	3002776	60022744	2663	18189										
C20orf194	0	genome.wustl.edu	37	chr20	3276685	3276685	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtttcaagctgaaattttccAccctggtagtaaccctcatc	6	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	3276685	3276685	A	C	SNP	C20orf194	ENST00000498079	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	63	0	0	100	19	15.83	-	-	-	C	3276685	A	C	3276685	1	2	232	0	1	0	0	0	0	0	0	0	2119	174	6	5		5	C20orf194	20	3276685	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	273909	3276685	59748835	2664	18190										
ATRN	0	genome.wustl.edu	37	chr20	3564721	3564721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggaatggtatacgatgagcAcctgcccccgtaagtgaaaa	11	9	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	3564721	3564721	A	C	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.2941	p.T981P	1.000	pfam_Plexin_repeat,smart_Plexin-like	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	335	3	0.88	276	40	12.62	-	-	-	C	3564721	A	C	3564721	3	2	232	1	0	0	0	0	1	0	0	0	1210	159	6	5	3007	5	ATRN	20	3564721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	288036	3564721	59460799	2665	18191										
MAVS	0	genome.wustl.edu	37	chr20	3844922	3844922	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgcgacctccagcctcacAccatcccgtgggcctgtgtc	11	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	3844922	3844922	A	C	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	silent	c.645	p.T215	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	35	0	0	43	14	24.56	-	-	-	C	3844922	A	C	3844922	2	2	232	1	0	0	0	0	0	0	0	1	9409	146	6	5		5	MAVS	20	3844922	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	280201	3844922	59180598	2666	18192										
SMOX	0	genome.wustl.edu	37	chr20	4162972	4162972	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgagattgagccccggggTgagggcgaccacaatcacga	14	12	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	4162972	4162972	T	G	SNP	SMOX	ENST00000278795	human	ensembl	69_37n	1	known	splice_site	c.844+2	e4+2	0.034	-	-	-	no_errors	SMOX	HGNC	ENSG00000088826	41	0	0	27	8	22.22	-	-	-	G	4162972	T	G	4162972	5	3	232	1	0	0	0	0	0	0	1	0	14892	1710	59	5	860	5	SMOX	20	4162972	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	318050	4162972	58862548	2667	18193										
CDS2	0	genome.wustl.edu	37	chr20	5154191	5154191	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcagagtcagaagcaaaggTagatggagagactgcatcgg	15	6	2	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	5154191	5154191	T	G	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	1	known	missense	c.80	p.V27G	0.000	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	226	1	0.44	158	20	11.05	-	-	-	G	5154191	T	G	5154191	3	3	232	1	0	0	0	0	1	0	0	0	3207	1638	57	5	86	5	CDS2	20	5154191	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	991219	5154191	57871329	2668	18194										
CDS2	0	genome.wustl.edu	37	chr20	5156090	5156090	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcccacttctcagtagccAcctggagggtcattggtgta	10	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	5156090	5156090	A	C	SNP	CDS2	ENST00000486875	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	CDS2	HGNC	ENSG00000101290	33	0	0	25	7	21.88	-	-	-	C	5156090	A	C	5156090	1	2	232	0	1	0	0	0	0	0	0	0	3207	174	6	5		5	CDS2	20	5156090	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1899	5156090	57869430	2669	18195										
CHGB	0	genome.wustl.edu	37	chr20	5897634	5897634	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcctactccctccacatcAccttctactttatctacaaa	1	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	5897634	5897634	A	C	SNP	CHGB	ENST00000488832	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CHGB	HGNC	ENSG00000089199	86	0	0	79	25	24.04	-	-	-	C	5897634	A	C	5897634	1	2	232	0	1	0	0	0	0	0	0	0	3368	174	6	5		5	CHGB	20	5897634	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	741544	5897634	57127886	2670	18196										
PLCB1	0	genome.wustl.edu	37	chr20	8862276	8862276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgatgtctctcagctgcaggTggagctggagcaagaatacc	13	9	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	8862276	8862276	T	G	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.3431	p.V1144G	0.631	pirsf_PLC-beta,pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	316	0	0	252	40	13.65	-	-	-	G	8862276	T	G	8862276	3	3	232	1	0	0	0	0	1	0	0	0	12101	1696	59	5	3660	5	PLCB1	20	8862276	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2964642	8862276	54163244	2671	18197										
PAK7	0	genome.wustl.edu	37	chr20	9561403	9561403	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggaatactgggagaaggTgatgaagccattttcttccg	13	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	9561403	9561403	T	G	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	missense	c.379	p.T127P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	328	0	0	260	36	12.16	-	-	-	G	9561403	T	G	9561403	3	3	232	1	0	0	0	0	1	0	0	0	11478	1696	59	5	1808	5	PAK7	20	9561403	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	699127	9561403	53464117	2672	18198										
ANKRD5	0	genome.wustl.edu	37	chr20	10030564	10030564	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccacgccggcaggatggTgggccaccgtattacatgat	12	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	10030564	10030564	T	G	SNP	ANKRD5	ENST00000378380	human	ensembl	69_37n	1	known	silent	c.1347	p.G449	0.333	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_HAND_2,prints_Ankyrin_rpt	-	no_errors	ANKRD5	HGNC	ENSG00000132623	117	1	0.85	97	18	15.65	-	-	-	G	10030564	T	G	10030564	2	3	232	1	0	0	0	0	0	0	0	1	675	1683	59	5		5	ANKRD5	20	10030564	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	469161	10030564	52994956	2673	18199										
JAG1	0	genome.wustl.edu	37	chr20	10626028	10626028	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggcaggtctttcctttccAcccatttttacagtcacagt	7	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	10626028	10626028	A	C	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.2089	p.W697G	1.000	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	83	0	0	92	24	20.51	-	-	-	C	10626028	A	C	10626028	3	2	232	1	0	0	0	0	1	0	0	0	7988	159	6	5	1611	5	JAG1	20	10626028	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	595464	10626028	52399492	2674	18200										
JAG1	0	genome.wustl.edu	37	chr20	10626844	10626844	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaatgcacctggcacctccAcctgctaccctccatcaggg	7	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	10626844	10626844	A	C	SNP	JAG1	ENST00000488480	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JAG1	HGNC	ENSG00000101384	35	0	0	23	13	36.11	-	-	-	C	10626844	A	C	10626844	1	2	232	0	1	0	0	0	0	0	0	0	7988	174	6	5		5	JAG1	20	10626844	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	816	10626844	52398676	2675	18201										
BTBD3	0	genome.wustl.edu	37	chr20	11899026	11899026	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagctcaaagaaagcaaatAccagcagcagcagtagcaac	8	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	11899026	11899026	A	C	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	missense	c.103	p.T35P	0.944	NULL	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	320	0	0	246	32	11.51	-	-	-	C	11899026	A	C	11899026	3	2	232	1	0	0	0	0	1	0	0	0	1553	391	14	5	105	5	BTBD3	20	11899026	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1272182	11899026	51126494	2676	18202										
BTBD3	0	genome.wustl.edu	37	chr20	11903365	11903365	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaaaagtacattgtccctcAccttgccagagcctgtgtta	7	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	11903365	11903365	A	C	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	missense	c.620	p.H207P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	140	0	0	124	17	11.97	-	-	-	C	11903365	A	C	11903365	3	2	232	1	0	0	0	0	1	0	0	0	1553	159	6	5	634	5	BTBD3	20	11903365	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4339	11903365	51122155	2677	18203										
TASP1	0	genome.wustl.edu	37	chr20	13539704	13539704	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttgcataaaatctgtgtccAccctttctgccagctctagt	7	12	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	13539704	13539704	A	C	SNP	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	missense	c.626	p.V209G	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	146	0	0	129	34	20.73	-	-	-	C	13539704	A	C	13539704	3	2	232	1	0	0	0	0	1	0	0	0	15681	159	6	5	664	5	TASP1	20	13539704	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1636339	13539704	49485816	2678	18204										
KIF16B	0	genome.wustl.edu	37	chr20	16407783	16407783	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggcctccacgatctgaacAccattcacagagcactggga	10	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	16407783	16407783	A	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	silent	c.1578	p.G526	0.986	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	660	4	0.6	352	50	12.41	-	-	-	C	16407783	A	C	16407783	2	2	232	1	0	0	0	0	0	0	0	1	8330	146	6	5		5	KIF16B	20	16407783	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2868079	16407783	46617737	2679	18205										
KIF16B	0	genome.wustl.edu	37	chr20	16488620	16488620	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tacctgagtgaacttgatggTgaagatggcatgagacctgc	13	7	0	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	16488620	16488620	T	G	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.682	p.T228P	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	210	0	0	155	22	12.43	-	-	-	G	16488620	T	G	16488620	3	3	232	1	0	0	0	0	1	0	0	0	8330	1696	59	5	3351	5	KIF16B	20	16488620	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	80837	16488620	46536900	2680	18206										
RALGAPA2	0	genome.wustl.edu	37	chr20	20493865	20493865	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtagtgccccaggtggttcAccaggtgggccatcaccatt	13	12	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	20493865	20493865	A	C	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.4148	p.V1383G	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	46	0	0	38	6	13.64	-	-	-	C	20493865	A	C	20493865	3	2	232	1	0	0	0	0	1	0	0	0	13097	159	6	5	1505	5	RALGAPA2	20	20493865	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4005245	20493865	42531655	2681	18207										
CSTL1	0	genome.wustl.edu	37	chr20	23420986	23420986	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctgggtcacttccaaaggTgggagggcttccagcagaag	15	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	23420986	23420986	T	G	SNP	CSTL1	ENST00000246020	human	ensembl	69_37n	1	known	missense	c.82	p.W28G	0.775	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CSTL1	HGNC	ENSG00000125823	140	1	0.7	94	27	21.77	-	-	-	G	23420986	T	G	23420986	3	3	232	1	0	0	0	0	1	0	0	0	4019	1696	59	5	84	5	CSTL1	20	23420986	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2927121	23420986	39604534	2682	18208										
VSX1	0	genome.wustl.edu	37	chr20	25059463	25059463	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggagaaaagggaccccagacAcctgtatccggtcttcgggg	14	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	25059463	25059463	A	C	SNP	VSX1	ENST00000376709	human	ensembl	69_37n	-1	known	splice_site	c.627+2	e3+2	1.000	-	-	-	no_errors	VSX1	HGNC	ENSG00000100987	195	0	0	133	24	15.29	-	-	-	C	25059463	A	C	25059463	5	2	232	1	0	0	0	0	0	0	1	0	17328	173	6	5	573	5	VSX1	20	25059463	Splice_Site	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1638477	25059463	37966057	2683	18209										
NANP	0	genome.wustl.edu	37	chr20	25597053	25597053	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aattttctattggctgcaccAccttttgtttcctggattgc	7	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	25597053	25597053	A	C	SNP	NANP	ENST00000304788	human	ensembl	69_37n	-1	known	silent	c.255	p.G85	0.760	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA_CTE7	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_hydro_IA_CTE7,tigrfam_HAD-SF_hydro_IA_v1	-	no_errors	NANP	HGNC	ENSG00000170191	59	0	0	53	12	18.46	-	-	-	C	25597053	A	C	25597053	2	2	232	1	0	0	0	0	0	0	0	1	10226	146	6	5		5	NANP	20	25597053	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	537590	25597053	37428467	2684	18210										
PLAGL2	0	genome.wustl.edu	37	chr20	30784392	30784392	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgaggctgagcttgcaaagTggtaagcaggggctgtgcct	16	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	30784392	30784392	T	G	SNP	PLAGL2	ENST00000246229	human	ensembl	69_37n	-1	known	missense	c.1354	p.T452P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003	62	0	0	39	5	11.36	-	-	-	G	30784392	T	G	30784392	3	3	232	1	0	0	0	0	1	0	0	0	12094	1696	59	5	140	5	PLAGL2	20	30784392	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5187339	30784392	32241128	2685	18211										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31984825	31984825	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagaggccaatggtccccAccccagagacctctgcactt	8	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	31984825	31984825	A	C	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.46	p.W16G	0.000	NULL	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	110	0	0	175	30	14.56	-	-	-	C	31984825	A	C	31984825	3	2	232	1	0	0	0	0	1	0	0	0	3174	159	6	5	1769	5	CDK5RAP1	20	31984825	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1200433	31984825	31040695	2686	18212										
ASIP	0	genome.wustl.edu	37	chr20	32848255	32848255	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgccaacagccacctgccAcctgaggagaagctccgaga	10	15	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	32848255	32848255	A	C	SNP	ASIP	ENST00000374954	human	ensembl	69_37n	1	known	silent	c.75	p.P25	0.849	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti,smart_Agouti,pfscan_Agouti	-	no_errors	ASIP	HGNC	ENSG00000101440	124	0	0	157	27	14.67	-	-	-	C	32848255	A	C	32848255	2	2	232	1	0	0	0	0	0	0	0	1	1047	146	6	5		5	ASIP	20	32848255	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	863430	32848255	30177265	2687	18213										
PROCR	0	genome.wustl.edu	37	chr20	33764138	33764138	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctccggagtggtcaccttcAccctgcagcagctcaatgcc	9	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	33764138	33764138	A	C	SNP	PROCR	ENST00000216968	human	ensembl	69_37n	1	known	missense	c.490	p.T164P	0.016	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000	78	0	0	85	20	19.05	-	-	-	C	33764138	A	C	33764138	3	2	232	1	0	0	0	0	1	0	0	0	12628	159	6	5	500	5	PROCR	20	33764138	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	915883	33764138	29261382	2688	18214										
EIF6	0	genome.wustl.edu	37	chr20	33867854	33867854	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cacagtagcttcctactagcAcctggtcggccactgtctgt	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	33867854	33867854	A	C	SNP	EIF6	ENST00000374436	human	ensembl	69_37n	-1	known	missense	c.437	p.V146G	1.000	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	-	no_errors	EIF6	HGNC	ENSG00000242372	177	0	0	107	22	16.79	-	-	-	C	33867854	A	C	33867854	3	2	232	1	0	0	0	0	1	0	0	0	5082	159	6	5	312	5	EIF6	20	33867854	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	103716	33867854	29157666	2689	18215										
UQCC	0	genome.wustl.edu	37	chr20	33935039	33935039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atacgacacatgtacttcccActccggccttcctgcttcat	5	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	33935039	33935039	A	C	SNP	UQCC	ENST00000374385	human	ensembl	69_37n	-1	known	missense	c.501	p.S167R	0.874	pfam_Ubiq_cyt_c_chap/UPF0174	pfam_Ubiq_cyt_c_chap/UPF0174	-	no_errors	UQCC	HGNC	ENSG00000101019	215	0	0	210	38	15.32	-	-	-	C	33935039	A	C	33935039	3	2	232	1	0	0	0	0	1	0	0	0	17112	156	6	5	414	5	UQCC	20	33935039	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	67185	33935039	29090481	2690	18216										
CEP250	0	genome.wustl.edu	37	chr20	34095934	34095934	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atggagacaaaggcttgaacAcctgcagcaagcagtggccc	12	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	34095934	34095934	A	C	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.6821	p.H2274P	0.002	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	233	1	0.42	153	35	18.52	-	-	-	C	34095934	A	C	34095934	3	2	232	1	0	0	0	0	1	0	0	0	3281	159	6	5	6935	5	CEP250	20	34095934	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	160895	34095934	28929586	2691	18217										
RBM12	0	genome.wustl.edu	37	chr20	34242528	34242528	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcggcatgcccgacatgggTggcagtggggtcatgggtgg	21	8	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	34242528	34242528	T	G	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	silent	c.717	p.P239	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	83	0	0	75	24	24.24	-	-	-	G	34242528	T	G	34242528	2	3	232	1	0	0	0	0	0	0	0	1	13196	1683	59	5		5	RBM12	20	34242528	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	146594	34242528	28782992	2692	18218										
RPN2	0	genome.wustl.edu	37	chr20	35856996	35856996	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaagactggccaggaagtggTgtttgttgccgagccagaca	15	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	35856996	35856996	T	G	SNP	RPN2	ENST00000237530	human	ensembl	69_37n	1	known	missense	c.1343	p.V448G	1.000	pfam_Ribophorin_II	pfam_Ribophorin_II	-	no_errors	RPN2	HGNC	ENSG00000118705	58	0	0	58	14	19.44	-	-	-	G	35856996	T	G	35856996	3	3	232	1	0	0	0	0	1	0	0	0	13694	1696	59	5	1389	5	RPN2	20	35856996	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1614468	35856996	27168524	2693	18219										
CTNNBL1	0	genome.wustl.edu	37	chr20	36374947	36374947	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccatgccagacctgtaccAccttctggtggagctgaatg	10	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	36374947	36374947	A	C	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	missense	c.323	p.H108P	1.000	pfam_DUF1716_euk,superfamily_ARM-type_fold	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	166	0	0	162	27	14.29	-	-	-	C	36374947	A	C	36374947	3	2	232	1	0	0	0	0	1	0	0	0	4050	159	6	5	418	5	CTNNBL1	20	36374947	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	517951	36374947	26650573	2694	18220										
KIAA1755	0	genome.wustl.edu	37	chr20	36869781	36869781	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccacaccgggcttgctccAccttgatgagtcctggatac	9	16	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	36869781	36869781	A	C	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.752	p.V251G	1.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	211	2	0.93	121	28	18.79	-	-	-	C	36869781	A	C	36869781	3	2	232	1	0	0	0	0	1	0	0	0	8309	159	6	5	2898	5	KIAA1755	20	36869781	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	494834	36869781	26155739	2695	18221										
ZHX3	0	genome.wustl.edu	37	chr20	39831767	39831767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attgtcgtttggcagaagggTgggttgctagtgtggctgtt	17	4	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	39831767	39831767	T	G	SNP	ZHX3	ENST00000373263	human	ensembl	69_37n	-1	known	missense	c.1790	p.H597P	0.229	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ZHX3	HGNC	ENSG00000174306	152	0	0	108	25	18.8	-	-	-	G	39831767	T	G	39831767	3	3	232	1	0	0	0	0	1	0	0	0	17773	1696	59	5	1088	5	ZHX3	20	39831767	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2961986	39831767	23193753	2696	18222										
CHD6	0	genome.wustl.edu	37	chr20	40113147	40113147	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctggatattggtcagttccAcctcaatgatcgtctcttgt	8	10	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	40113147	40113147	A	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.2102	p.V701G	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	267	2	0.74	184	28	13.15	-	-	-	C	40113147	A	C	40113147	3	2	232	1	0	0	0	0	1	0	0	0	3358	159	6	5	6137	5	CHD6	20	40113147	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	281380	40113147	22912373	2697	18223										
WISP2	0	genome.wustl.edu	37	chr20	43355909	43355909	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcctgtccaggccctgcccAccctccaggggtcgcagtcc	11	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	43355909	43355909	A	C	SNP	WISP2	ENST00000372865	human	ensembl	69_37n	1	known	missense	c.467	p.H156P	0.006	NULL	pfam_IGFBP-like,smart_IGFBP-like	-	no_errors	WISP2	HGNC	ENSG00000064205	32	0	0	28	10	26.32	-	-	-	C	43355909	A	C	43355909	3	2	232	1	0	0	0	0	1	0	0	0	17470	146	6	5	728	5	WISP2	20	43355909	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3242762	43355909	19669611	2698	18224										
PABPC1L	0	genome.wustl.edu	37	chr20	43559102	43559102	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcttgtcttgcttttaggTgatgacagagggtggccaca	13	7	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	43559102	43559102	T	G	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	missense	c.974	p.V325G	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	227	0	0	353	45	11.28	-	-	-	G	43559102	T	G	43559102	3	3	232	1	0	0	0	0	1	0	0	0	11437	1710	59	5	1004	5	PABPC1L	20	43559102	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	203193	43559102	19466418	2699	18225										
SLPI	0	genome.wustl.edu	37	chr20	43881772	43881772	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggccataagtcactgggcActtcccaggcttcctccttg	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	43881772	43881772	A	C	SNP	SLPI	ENST00000338380	human	ensembl	69_37n	-1	known	missense	c.265	p.C89G	0.532	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	SLPI	HGNC	ENSG00000124107	96	0	0	123	15	10.87	-	-	-	C	43881772	A	C	43881772	3	2	232	1	0	0	0	0	1	0	0	0	14842	159	6	5	141	5	SLPI	20	43881772	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	322670	43881772	19143748	2700	18226										
WFDC10B	0	genome.wustl.edu	37	chr20	44333626	44333626	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgccctcctttcacaagacAccatcctttggccaccagtg	6	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	44333626	44333626	A	C	SNP	WFDC10B	ENST00000335769	human	ensembl	69_37n	-1	known	missense	c.5	p.V2G	0.208	NULL	NULL	-	no_errors	WFDC10B	HGNC	ENSG00000182931	275	1	0.36	227	59	20.56	-	-	-	C	44333626	A	C	44333626	3	2	232	1	0	0	0	0	1	0	0	0	17445	159	6	5	371	5	WFDC10B	20	44333626	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	451854	44333626	18691894	2701	18227										
ZSWIM1	0	genome.wustl.edu	37	chr20	44511366	44511366	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgattaaggactcaagcccAcctatgctgctgcaccaggt	9	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	44511366	44511366	A	C	SNP	ZSWIM1	ENST00000372520	human	ensembl	69_37n	1	known	silent	c.135	p.P45	0.926	NULL	pfam_Znf_SWIM,pfscan_Znf_SWIM	-	no_errors	ZSWIM1	HGNC	ENSG00000168612	133	1	0.75	139	21	13.04	-	-	-	C	44511366	A	C	44511366	2	2	232	1	0	0	0	0	0	0	0	1	18331	146	6	5		5	ZSWIM1	20	44511366	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	177740	44511366	18514154	2702	18228										
MMP9	0	genome.wustl.edu	37	chr20	44639824	44639824	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgcagatggcgcggcctgccActtccccttcatcttcgagg	11	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	44639824	44639824	A	C	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	missense	c.692	p.H231P	1.000	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	144	0	0	93	20	17.7	-	-	-	C	44639824	A	C	44639824	3	2	232	1	0	0	0	0	1	0	0	0	9741	159	6	5	710	5	MMP9	20	44639824	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	128458	44639824	18385696	2703	18229										
SLC35C2	0	genome.wustl.edu	37	chr20	44983861	44983861	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccccggcgatgaggaggaccAccaggaccagtgccgcgcgc	15	16	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	44983861	44983861	A	C	SNP	SLC35C2	ENST00000543605	human	ensembl	69_37n	-1	known	missense	c.515	p.V172G	1.000	pfam_UAA	pfam_DUF250,pfam_UAA	-	no_errors	SLC35C2	HGNC	ENSG00000080189	51	0	0	40	9	17.31	-	-	-	C	44983861	A	C	44983861	3	2	232	1	0	0	0	0	1	0	0	0	14669	159	6	5	689	5	SLC35C2	20	44983861	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	344037	44983861	18041659	2704	18230										
SLC13A3	0	genome.wustl.edu	37	chr20	45188747	45188747	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcagcccagtccgggaaggTgcccagctggaagatggtct	14	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	45188747	45188747	T	G	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1723	p.T575P	0.998	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	149	1	0.66	157	21	11.73	-	-	-	G	45188747	T	G	45188747	3	3	232	1	0	0	0	0	1	0	0	0	14482	1696	59	5	89	5	SLC13A3	20	45188747	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	204886	45188747	17836773	2705	18231										
NCOA3	0	genome.wustl.edu	37	chr20	46268322	46268322	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtatggctacctgttttaggTgggccaaaccgaaatgtgac	12	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	46268322	46268322	T	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	silent	c.2709	p.G903	0.999	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	322	3	0.92	247	61	19.81	-	-	-	G	46268322	T	G	46268322	2	3	232	1	0	0	0	0	0	0	0	1	10302	1710	59	5		5	NCOA3	20	46268322	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1079575	46268322	16757198	2706	18232										
CSE1L	0	genome.wustl.edu	37	chr20	47712943	47712943	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgctccagtatctccaagggTaccttcaggcagccagtgtg	11	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	47712943	47712943	T	G	SNP	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	missense	c.2884	p.Y962D	0.998	pfam_CAS_CSE1_C,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	106	0	0	93	16	14.68	-	-	-	G	47712943	T	G	47712943	3	3	232	1	0	0	0	0	1	0	0	0	3962	1638	57	5	2978	5	CSE1L	20	47712943	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1444621	47712943	15312577	2707	18233										
STAU1	0	genome.wustl.edu	37	chr20	47782549	47782549	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttacctgcagctgcactggTggatgtaatagatgcagagg	13	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	47782549	47782549	T	G	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.190	p.T64P	1.000	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	106	0	0	93	21	18.26	-	-	-	G	47782549	T	G	47782549	3	3	232	1	0	0	0	0	1	0	0	0	15363	1696	59	5	1609	5	STAU1	20	47782549	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	69606	47782549	15242971	2708	18234										
FAM65C	0	genome.wustl.edu	37	chr20	49221281	49221281	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aacttgcccgtggggctgggTgacaccaggaagctctcagt	14	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	49221281	49221281	T	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	silent	c.987	p.S329	0.183	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	19	0	0	15	5	25	-	-	-	G	49221281	T	G	49221281	2	3	232	1	0	0	0	0	0	0	0	1	5646	1683	59	5		5	FAM65C	20	49221281	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1438732	49221281	13804239	2709	18235										
NFATC2	0	genome.wustl.edu	37	chr20	50048651	50048651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgctcctgtttaatggtcAcccccgcaggtaatacttcc	7	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	50048651	50048651	A	C	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	missense	c.2675	p.V892G	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	105	0	0	69	19	21.35	-	-	-	C	50048651	A	C	50048651	3	2	232	1	0	0	0	0	1	0	0	0	10434	159	6	5	158	5	NFATC2	20	50048651	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	827370	50048651	12976869	2710	18236										
ZNF217	0	genome.wustl.edu	37	chr20	52198428	52198428	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcttgccccgattccttcActtcttggcaaatggcaact	6	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	52198428	52198428	A	C	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.938	p.V313G	0.967	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	151	0	0	123	15	10.87	-	-	-	C	52198428	A	C	52198428	3	2	232	1	0	0	0	0	1	0	0	0	17868	159	6	5	2224	5	ZNF217	20	52198428	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2149777	52198428	10827092	2711	18237										
BCAS1	0	genome.wustl.edu	37	chr20	52601861	52601861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgcccagaggcagagaggTgggtcctgatttctccttgg	14	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	52601861	52601861	T	G	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.1240	p.T414P	0.992	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	189	1	0.53	163	30	15.54	-	-	-	G	52601861	T	G	52601861	3	3	232	1	0	0	0	0	1	0	0	0	1354	1696	59	5	673	5	BCAS1	20	52601861	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	403433	52601861	10423659	2712	18238										
BCAS1	0	genome.wustl.edu	37	chr20	52644983	52644983	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ataagccaggaacctcatccAccttgtcttgatgctctgcc	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	52644983	52644983	A	C	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.671	p.V224G	0.001	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	375	2	0.53	291	67	18.72	-	-	-	C	52644983	A	C	52644983	3	2	232	1	0	0	0	0	1	0	0	0	1354	159	6	5	1119	5	BCAS1	20	52644983	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	43122	52644983	10380537	2713	18239										
BCAS1	0	genome.wustl.edu	37	chr20	52645034	52645034	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctgttggctgtcacctggcAccttttcctgtcccttgtcc	8	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	52645034	52645034	A	C	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.620	p.V207G	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	344	3	0.86	293	39	11.68	-	-	-	C	52645034	A	C	52645034	3	2	232	1	0	0	0	0	1	0	0	0	1354	159	6	5	1170	5	BCAS1	20	52645034	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	51	52645034	10380486	2714	18240										
MC3R	0	genome.wustl.edu	37	chr20	54823961	54823961	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcctaatggctcggagcaccTccaagcccctttcttcagca	8	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	54823961	54823961	T	C	SNP	MC3R	ENST00000243911	human	ensembl	69_37n	1	known	missense	c.62	p.L21P	0.000	prints_Mcort_3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089	276	0	0	263	37	12.29	-	-	-	C	54823961	T	C	54823961	3	2	232	1	0	0	0	0	1	0	0	0	9436	1551	54	5	64	5	MC3R	20	54823961	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2178927	54823961	8201559	2715	18241										
ZBP1	0	genome.wustl.edu	37	chr20	56185301	56185301	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttgttgctgttgccgatggTggcgtcctcgagaaagcacg	14	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	56185301	56185301	T	G	SNP	ZBP1	ENST00000343535	human	ensembl	69_37n	-1	known	missense	c.997	p.T333P	0.000	NULL	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256	203	0	0	184	24	11.48	-	-	-	G	56185301	T	G	56185301	3	3	232	1	0	0	0	0	1	0	0	0	17617	1696	59	5	300	5	ZBP1	20	56185301	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1361340	56185301	6840219	2716	18242										
TUBB1	0	genome.wustl.edu	37	chr20	57598838	57598838	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatcgagaatgtcctagaggTggtgaggcacgagagtgaga	17	5	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	57598838	57598838	T	G	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	missense	c.356	p.V119G	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	147	0	0	122	28	18.67	-	-	-	G	57598838	T	G	57598838	3	3	232	1	0	0	0	0	1	0	0	0	16850	1696	59	5	370	5	TUBB1	20	57598838	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1413537	57598838	5426682	2717	18243										
TUBB1	0	genome.wustl.edu	37	chr20	57599139	57599139	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtaccctgaagctgacgacAcccacctatggggatctcaa	9	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	20	57599139	57599139	A	C	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	silent	c.657	p.T219	0.940	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	156	1	0.64	151	30	16.57	-	-	-	C	57599139	A	C	57599139	2	2	232	1	0	0	0	0	0	0	0	1	16850	146	6	5		5	TUBB1	20	57599139	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	301	57599139	5426381	2718	18244										
TPTE	0	genome.wustl.edu	37	chr21	11029685	11029685	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtctggggaccacgagggTgggctcactgtattatgggt	16	7	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	11029685	11029685	T	G	SNP	TPTE	ENST00000415664	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157	555	5	0.89	449	65	12.65	-	-	-	G	11029685	T	G	11029685	1	3	232	0	1	0	0	0	0	0	0	0	16526	1711	59	5		5	TPTE	21	11029685	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09		11029685	37100210	2719	18245										
NRIP1	0	genome.wustl.edu	37	chr21	16337417	16337417	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttctcactgggcatggaacAcccattcaaaagcccagatt	7	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	16337417	16337417	A	C	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.3097	p.C1033G	0.972	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	153	0	0	109	21	16.15	-	-	-	C	16337417	A	C	16337417	3	2	232	1	0	0	0	0	1	0	0	0	10725	159	6	5	383	5	NRIP1	21	16337417	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5307732	16337417	31792478	2720	18246										
APP	0	genome.wustl.edu	37	chr21	27347409	27347409	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaacagcctgcagagcggTgatgtagttctccagggcca	14	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	27347409	27347409	T	G	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.1432	p.T478P	0.997	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	98	1	1	116	21	15.33	-	-	-	G	27347409	T	G	27347409	3	3	232	1	0	0	0	0	1	0	0	0	817	1696	59	5	912	5	APP	21	27347409	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	11009992	27347409	20782486	2721	18247										
ADAMTS1	0	genome.wustl.edu	37	chr21	28212006	28212006	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtacttgggaatccattccAccgcaggcccactcccaaag	8	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	28212006	28212006	A	C	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	missense	c.1928	p.V643G	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	135	0	0	120	26	17.69	-	-	-	C	28212006	A	C	28212006	3	2	232	1	0	0	0	0	1	0	0	0	255	159	6	5	987	5	ADAMTS1	21	28212006	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	864597	28212006	19917889	2722	18248										
ADAMTS5	0	genome.wustl.edu	37	chr21	28338451	28338451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgcgtagacgaggtagcccAccttgccgccgccggagtag	14	15	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	28338451	28338451	A	C	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.260	p.V87G	1.000	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	42	0	0	17	15	46.88	-	-	-	C	28338451	A	C	28338451	3	2	232	1	0	0	0	0	1	0	0	0	269	159	6	5	2564	5	ADAMTS5	21	28338451	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	126445	28338451	19791444	2723	18249										
N6AMT1	0	genome.wustl.edu	37	chr21	30255357	30255357	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctaggaatgcagatactacAccagaccctgaccctacttc	7	14	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	30255357	30255357	A	C	SNP	N6AMT1	ENST00000303775	human	ensembl	69_37n	-1	known	silent	c.171	p.G57	0.434	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,tigrfam_HemK-rel_arch	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,tigrfam_HemK-rel_arch	-	no_errors	N6AMT1	HGNC	ENSG00000156239	207	0	0	166	26	13.47	-	-	-	C	30255357	A	C	30255357	2	2	232	1	0	0	0	0	0	0	0	1	10186	146	6	5		5	N6AMT1	21	30255357	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1916906	30255357	17874538	2724	18250										
CCT8	0	genome.wustl.edu	37	chr21	30432943	30432943	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccaggtaagtatctagaatAccagcttccagcatgtcctt	7	12	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	30432943	30432943	A	C	SNP	CCT8	ENST00000432178	human	ensembl	69_37n	-1	putative	missense	c.163	p.Y55D	0.145	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCT8	HGNC	ENSG00000156261	149	1	0.67	111	21	15.91	-	-	-	C	30432943	A	C	30432943	3	2	232	1	0	0	0	0	1	0	0	0	2989	378	14	5	166	5	CCT8	21	30432943	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	177586	30432943	17696952	2725	18251										
CLDN17	0	genome.wustl.edu	37	chr21	31538402	31538402	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatccacaaagcagacccccTccaatgaagaggacagcagc	8	14	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	31538402	31538402	T	C	SNP	CLDN17	ENST00000286808	human	ensembl	69_37n	-1	known	silent	c.534	p.G178	0.939	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282	166	0	0	117	15	11.36	-	-	-	C	31538402	T	C	31538402	2	2	232	1	0	0	0	0	0	0	0	1	3508	1538	54	5		5	CLDN17	21	31538402	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1105459	31538402	16591493	2726	18252										
KRTAP15-1	0	genome.wustl.edu	37	chr21	31812820	31812820	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggagacctactgtgagcccAccagctgccagacatcctgc	10	15	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	31812820	31812820	A	C	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	1	known	missense	c.175	p.T59P	0.010	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	265	1	0.38	236	37	13.55	-	-	-	C	31812820	A	C	31812820	3	2	232	1	0	0	0	0	1	0	0	0	8579	159	6	5	177	5	KRTAP15-1	21	31812820	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	274418	31812820	16317075	2727	18253										
KRTAP15-1	0	genome.wustl.edu	37	chr21	31813013	31813013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgggtccagcttctaccAcccaactaccttttcatcca	5	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	31813013	31813013	A	C	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	1	known	missense	c.368	p.H123P	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	198	0	0	161	36	18.27	-	-	-	C	31813013	A	C	31813013	3	2	232	1	0	0	0	0	1	0	0	0	8579	159	6	5	370	5	KRTAP15-1	21	31813013	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	193	31813013	16316882	2728	18254										
KRTAP19-8	0	genome.wustl.edu	37	chr21	32410706	32410706	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatagccatagccccagccAccaaagcctccatagccata	5	18	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	32410706	32410706	A	C	SNP	KRTAP19-8	ENST00000382822	human	ensembl	69_37n	-1	known	silent	c.57	p.G19	0.002	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-8	HGNC	ENSG00000206102	373	3	0.8	388	60	13.36	-	-	-	C	32410706	A	C	32410706	2	2	232	1	0	0	0	0	0	0	0	1	8588	146	6	5		5	KRTAP19-8	21	32410706	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	597693	32410706	15719189	2729	18255										
TIAM1	0	genome.wustl.edu	37	chr21	32639149	32639149	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcggagttcctgtggatcAccttccccgaggaagcgtgc	12	13	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	32639149	32639149	A	C	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.140	p.V47G	0.875	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	47	0	0	55	12	17.65	-	-	-	C	32639149	A	C	32639149	3	2	232	1	0	0	0	0	1	0	0	0	15985	159	6	5	4735	5	TIAM1	21	32639149	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	228443	32639149	15490746	2730	18256										
HUNK	0	genome.wustl.edu	37	chr21	33371431	33371431	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctggaggccagcctgcccccActgcagcccctagcccctgt	10	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	33371431	33371431	A	C	SNP	HUNK	ENST00000270112	human	ensembl	69_37n	1	known	silent	c.2079	p.P693	0.152	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	97	0	0	82	14	14.58	-	-	-	C	33371431	A	C	33371431	2	2	232	1	0	0	0	0	0	0	0	1	7512	146	6	5		5	HUNK	21	33371431	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	732282	33371431	14758464	2731	18257										
TMEM50B	0	genome.wustl.edu	37	chr21	34837690	34837690	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcatagctatcacctctcAcctgagcattggatacagca	6	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	34837690	34837690	A	C	SNP	TMEM50B	ENST00000420455	human	ensembl	69_37n	-1	known	missense	c.239	p.V80G	1.000	pfam_UPF0220	pfam_UPF0220	-	no_errors	TMEM50B	HGNC	ENSG00000142188	89	0	0	56	16	21.92	-	-	-	C	34837690	A	C	34837690	3	2	232	1	0	0	0	0	1	0	0	0	16271	159	6	5	253	5	TMEM50B	21	34837690	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1466259	34837690	13292205	2732	18258										
ITSN1	0	genome.wustl.edu	37	chr21	35138278	35138278	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtctggccaaccactgccAcctgtcctgcctccagaata	7	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	35138278	35138278	A	C	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	silent	c.888	p.P296	0.128	smart_EPS15_homology,pfscan_EPS15_homology	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	82	0	0	83	21	20.19	-	-	-	C	35138278	A	C	35138278	2	2	232	1	0	0	0	0	0	0	0	1	7980	146	6	5		5	ITSN1	21	35138278	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	300588	35138278	12991617	2733	18259										
ITSN1	0	genome.wustl.edu	37	chr21	35190573	35190573	+	Silent	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgttattccacacaagggTgaaaaggtggaggggctaca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	35190573	35190573	T	G	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	silent	c.2730	p.G910	0.984	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	136	0	0	154	51	24.76	-	-	-	G	35190573	T	G	35190573	2	3	232	1	0	0	0	0	0	0	0	1	7980	1683	59	5		5	ITSN1	21	35190573	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	52295	35190573	12939322	2734	18260	199	2								
ITSN1	0	genome.wustl.edu	37	chr21	35190581	35190581	+	Missense_Mutation	SNP	T	T	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccacacaagggtgaaaaggTggaggggctacaagctcaag							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	35190581	35190581	T	G	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.2738	p.V913G	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	140	1	0.7	160	46	22.33	-	-	-	G	35190581	T	G	35190581	3	3	232	1	0	0	0	0	1	0	0	0	7980	1696	59	5	2824	5	ITSN1	21	35190581	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8	35190581	12939314	2735	18261	199	2								
SLC5A3	0	genome.wustl.edu	37	chr21	35467906	35467906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctctgattctctatattttcAccaagctctcggtggatctg	7	11	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	35467906	35467906	A	C	SNP	SLC5A3	ENST00000381151	human	ensembl	69_37n	1	known	missense	c.409	p.T137P	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	267	0	0	170	24	12.37	-	-	-	C	35467906	A	C	35467906	3	2	232	1	0	0	0	0	1	0	0	0	14755	159	6	5	411	5	SLC5A3	21	35467906	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	277325	35467906	12661989	2736	18262										
CBR1	0	genome.wustl.edu	37	chr21	37445034	37445034	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaatgcctgctgcccagggTgggtgagaactgacatggcg	16	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	37445034	37445034	T	G	SNP	CBR1	ENST00000290349	human	ensembl	69_37n	1	known	missense	c.688	p.W230G	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR1	HGNC	ENSG00000159228	43	0	0	32	8	20	-	-	-	G	37445034	T	G	37445034	3	3	232	1	0	0	0	0	1	0	0	0	2733	1696	59	5	698	5	CBR1	21	37445034	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1977128	37445034	10684861	2737	18263										
CHAF1B	0	genome.wustl.edu	37	chr21	37763873	37763873	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtcatcctattgtggaaggTgaatgataacaaggagccgg	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	37763873	37763873	T	G	SNP	CHAF1B	ENST00000314103	human	ensembl	69_37n	1	known	missense	c.284	p.V95G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	-	no_errors	CHAF1B	HGNC	ENSG00000159259	41	0	0	30	21	41.18	-	-	-	G	37763873	T	G	37763873	3	3	232	1	0	0	0	0	1	0	0	0	3341	1696	59	5	294	5	CHAF1B	21	37763873	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	318839	37763873	10366022	2738	18264										
SIM2	0	genome.wustl.edu	37	chr21	38098508	38098508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctaccagattgtggggctggTggccgtgggccagtcgctgc	17	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	38098508	38098508	T	G	SNP	SIM2	ENST00000290399	human	ensembl	69_37n	1	known	missense	c.632	p.V211G	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM2	HGNC	ENSG00000159263	54	0	0	55	10	15.15	-	-	-	G	38098508	T	G	38098508	3	3	232	1	0	0	0	0	1	0	0	0	14413	1696	59	5	654	5	SIM2	21	38098508	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	334635	38098508	10031387	2739	18265										
KCNJ6	0	genome.wustl.edu	37	chr21	39086841	39086841	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catggagatcactgcatgggTggaaaagaccagggtctctg	14	8	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	39086841	39086841	T	G	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	missense	c.619	p.T207P	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	101	0	0	67	12	15.19	-	-	-	G	39086841	T	G	39086841	3	3	232	1	0	0	0	0	1	0	0	0	8109	1696	59	5	660	5	KCNJ6	21	39086841	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	988333	39086841	9043054	2740	18266										
ETS2	0	genome.wustl.edu	37	chr21	40190507	40190507	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctcagctccgtcagcgtcAcctactgctctgtcagtcag	10	15	6	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	40190507	40190507	A	C	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.748	p.T250P	0.803	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	313	1	0.32	264	37	12.29	-	-	-	C	40190507	A	C	40190507	3	2	232	1	0	0	0	0	1	0	0	0	5313	159	6	5	770	5	ETS2	21	40190507	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1103666	40190507	7939388	2741	18267										
SH3BGR	0	genome.wustl.edu	37	chr21	40834397	40834397	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatgaagacaacaggaggTggatgagagagaatgttcct	15	4	0	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	40834397	40834397	T	G	SNP	SH3BGR	ENST00000333634	human	ensembl	69_37n	1	known	missense	c.331	p.W111G	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437	127	1	0.78	56	15	21.13	-	-	-	G	40834397	T	G	40834397	3	3	232	1	0	0	0	0	1	0	0	0	14328	1696	59	5	337	5	SH3BGR	21	40834397	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	643890	40834397	7295498	2742	18268										
SH3BGR	0	genome.wustl.edu	37	chr21	40871772	40871772	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcagagaaggctgaagaaggTggagaaactgaggcacaaaa	14	5	1	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	40871772	40871772	T	G	SNP	SH3BGR	ENST00000333634	human	ensembl	69_37n	1	known	silent	c.525	p.G175	0.472	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437	99	0	0	102	22	17.74	-	-	-	G	40871772	T	G	40871772	2	3	232	1	0	0	0	0	0	0	0	1	14328	1683	59	5		5	SH3BGR	21	40871772	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	37375	40871772	7258123	2743	18269										
DSCAM	0	genome.wustl.edu	37	chr21	41561083	41561083	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggactataatgggcttctcAccatgcgccgtgcagctcat	10	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	41561083	41561083	A	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.2439	p.G813	0.026	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	187	1	0.53	119	25	17.36	-	-	-	C	41561083	A	C	41561083	2	2	232	1	0	0	0	0	0	0	0	1	4803	146	6	5		5	DSCAM	21	41561083	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	689311	41561083	6568812	2744	18270										
MX1	0	genome.wustl.edu	37	chr21	42811671	42811671	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaatcagtcatgagctaatcAccctggagatcagctcccga	9	12	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	42811671	42811671	A	C	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	missense	c.487	p.T163P	0.048	pfam_Dynamin_GTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	117	0	0	122	28	18.67	-	-	-	C	42811671	A	C	42811671	3	2	232	1	0	0	0	0	1	0	0	0	10069	159	6	5	501	5	MX1	21	42811671	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1250588	42811671	5318224	2745	18271										
RSPH1	0	genome.wustl.edu	37	chr21	43896156	43896156	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctccccgggttctcctgcAcctgagataaaacacaagtc	7	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	43896156	43896156	A	C	SNP	RSPH1	ENST00000291536	human	ensembl	69_37n	-1	known	missense	c.729	p.S243R	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188	36	0	0	34	6	15	-	-	-	C	43896156	A	C	43896156	3	2	232	1	0	0	0	0	1	0	0	0	13788	173	6	5	208	5	RSPH1	21	43896156	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1084485	43896156	4233739	2746	18272										
NDUFV3	0	genome.wustl.edu	37	chr21	44323553	44323553	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgattcagaagctcgtcaggTgggtcggaaagtgacgtcgc	15	8	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	44323553	44323553	T	G	SNP	NDUFV3	ENST00000354250	human	ensembl	69_37n	1	known	missense	c.431	p.V144G	0.000	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194	146	1	0.68	231	40	14.76	-	-	-	G	44323553	T	G	44323553	3	3	232	1	0	0	0	0	1	0	0	0	10373	1696	59	5	441	5	NDUFV3	21	44323553	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	427397	44323553	3806342	2747	18273										
KRTAP10-5	0	genome.wustl.edu	37	chr21	45999867	45999867	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agactgctggcagcatgaagTggaagccccagagcagacgg	15	10	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	45999867	45999867	T	G	SNP	KRTAP10-5	ENST00000400372	human	ensembl	69_37n	-1	known	missense	c.589	p.T197P	0.135	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	510	3	0.58	429	58	11.79	-	-	-	G	45999867	T	G	45999867	3	3	232	1	0	0	0	0	1	0	0	0	8565	1696	59	5	230	5	KRTAP10-5	21	45999867	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1676314	45999867	2130028	2748	18274										
KRTAP10-7	0	genome.wustl.edu	37	chr21	46021260	46021260	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcccgtctgctgtgtgcccAcctgctctgatgattccggt	11	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	46021260	46021260	A	C	SNP	KRTAP10-7	ENST00000380102	human	ensembl	69_37n	1	known	missense	c.739	p.T247P	0.000	NULL	NULL	-	no_errors	KRTAP10-7	HGNC	ENSG00000205441	252	0	0	207	26	11.06	-	-	-	C	46021260	A	C	46021260	3	2	232	1	0	0	0	0	1	0	0	0	8567	159	6	5	730	5	KRTAP10-7	21	46021260	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	21393	46021260	2108635	2749	18275										
KRTAP10-8	0	genome.wustl.edu	37	chr21	46032120	46032120	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccgagtctcctcccccagcAcctgcactggctcctcctgg	9	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	46032120	46032120	A	C	SNP	KRTAP10-8	ENST00000334662	human	ensembl	69_37n	1	known	missense	c.103	p.T35P	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP10-8	HGNC	ENSG00000187766	236	1	0.42	213	47	17.67	-	-	-	C	46032120	A	C	46032120	3	2	232	1	0	0	0	0	1	0	0	0	8568	159	6	5	105	5	KRTAP10-8	21	46032120	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	10860	46032120	2097775	2750	18276										
ADARB1	0	genome.wustl.edu	37	chr21	46596071	46596071	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcctaatgcctctgaggcccAcctggccatggggaggaccc	12	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	46596071	46596071	A	C	SNP	ADARB1	ENST00000360697	human	ensembl	69_37n	1	known	missense	c.455	p.H152P	1.000	NULL	pfam_A_deamin,pfam_Ds-RNA-bd,superfamily_Cytokine_IL1-like,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381	103	1	0.96	110	18	13.95	-	-	-	C	46596071	A	C	46596071	3	2	232	1	0	0	0	0	1	0	0	0	282	159	6	5	461	5	ADARB1	21	46596071	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	563951	46596071	1533824	2751	18277										
POFUT2	0	genome.wustl.edu	37	chr21	46697041	46697041	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccgcaggtgcctggcaaacAccatgctgcgacgggtctgt	13	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	46697041	46697041	A	C	SNP	POFUT2	ENST00000349485	human	ensembl	69_37n	-1	known	missense	c.722	p.V241G	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	26	0	0	27	5	15.62	-	-	-	C	46697041	A	C	46697041	3	2	232	1	0	0	0	0	1	0	0	0	12258	159	6	5	722	5	POFUT2	21	46697041	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	100970	46697041	1432854	2752	18278										
MCM3AP	0	genome.wustl.edu	37	chr21	47665080	47665080	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtcaagggaatgggggcagTgggaaaccagccactgcact	16	9	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	47665080	47665080	T	G	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4679	p.H1560P	0.296	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	53	0	0	68	11	13.92	-	-	-	G	47665080	T	G	47665080	3	3	232	1	0	0	0	0	1	0	0	0	9459	1696	59	5	1287	5	MCM3AP	21	47665080	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	968039	47665080	464815	2753	18279										
PCNT	0	genome.wustl.edu	37	chr21	47746323	47746323	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacagagaaaaacaaaaggTgacagttcgcattcggagaa	11	7	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	47746323	47746323	T	G	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	silent	c.87	p.G29	1.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	57	0	0	49	11	18.03	-	-	-	G	47746323	T	G	47746323	2	3	232	1	0	0	0	0	0	0	0	1	11663	1683	59	5		5	PCNT	21	47746323	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	81243	47746323	383572	2754	18280										
PCNT	0	genome.wustl.edu	37	chr21	47860954	47860954	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatcacatctcgtcctttcAccaggttccgcacggccgtc	7	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	47860954	47860954	A	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.9580	p.T3194P	0.068	pfam_PACT_domain	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	48	0	0	45	7	13.46	-	-	-	C	47860954	A	C	47860954	3	2	232	1	0	0	0	0	1	0	0	0	11663	159	6	5	9750	5	PCNT	21	47860954	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	114631	47860954	268941	2755	18281										
PRMT2	0	genome.wustl.edu	37	chr21	48071811	48071811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtctgcctctcccctgcAcctgtgcgtctgtccctctt	8	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	21	48071811	48071811	A	C	SNP	PRMT2	ENST00000334494	human	ensembl	69_37n	1	novel	missense	c.748	p.T250P	0.003	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	76	0	0	82	19	18.81	-	-	-	C	48071811	A	C	48071811	3	2	232	1	0	0	0	0	1	0	0	0	12618	174	6	5		5	PRMT2	21	48071811	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	210857	48071811	58084	2756	18282										
POTEH	0	genome.wustl.edu	37	chr22	16267012	16267012	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtggaattaatccatcatcAccattgtcagcagtggcacc	9	11	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	16267012	16267012	A	C	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	silent	c.1437	p.G479	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	1643	0	0	1220	181	12.86	-	-	-	C	16267012	A	C	16267012	2	2	232	1	0	0	0	0	0	0	0	1	12341	146	6	5		5	POTEH	22	16267012	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		16267012	35037554	2757	18283										
CECR2	0	genome.wustl.edu	37	chr22	18028673	18028673	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagccagtcagcctcccccAccaaggtccctcttctcaga	6	20	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	18028673	18028673	A	C	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	silent	c.3630	p.P1210	0.002	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	67	0	0	70	14	16.47	-	-	-	C	18028673	A	C	18028673	2	2	232	1	0	0	0	0	0	0	0	1	3235	146	6	5		5	CECR2	22	18028673	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1761661	18028673	33275893	2758	18284										
C22orf25	0	genome.wustl.edu	37	chr22	20024444	20024444	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccagccagttctcatgccAcccaagctgctgtgtgcagg	11	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	20024444	20024444	A	C	SNP	C22orf25	ENST00000434570	human	ensembl	69_37n	1	known	silent	c.6	p.P2	0.000	NULL	pfam_DUF833	-	no_errors	C22orf25	HGNC	ENSG00000183597	26	0	0	22	6	21.43	-	-	-	C	20024444	A	C	20024444	2	2	232	1	0	0	0	0	0	0	0	1	2159	174	6	5		5	C22orf25	22	20024444	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1995771	20024444	31280122	2759	18285										
GGT5	0	genome.wustl.edu	37	chr22	24622675	24622675	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttgagcgtctctacaaggTggtggtacacgttcaccctc	10	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	24622675	24622675	T	G	SNP	GGT5	ENST00000398292	human	ensembl	69_37n	-1	known	missense	c.962	p.H321P	0.966	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998	56	0	0	26	12	31.58	-	-	-	G	24622675	T	G	24622675	3	3	232	1	0	0	0	0	1	0	0	0	6414	1696	59	5	825	5	GGT5	22	24622675	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4598231	24622675	26681891	2760	18286										
CRYBB2	0	genome.wustl.edu	37	chr22	25627726	25627726	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcaccaacgtggtgccttccAcccctccaactagtgccctc	7	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	25627726	25627726	A	C	SNP	CRYBB2	ENST00000398215	human	ensembl	69_37n	1	known	missense	c.605	p.H202P	1.000	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB2	HGNC	ENSG00000244752	105	1	0.93	68	24	25.53	-	-	-	C	25627726	A	C	25627726	3	2	232	1	0	0	0	0	1	0	0	0	3941	159	6	5	623	5	CRYBB2	22	25627726	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1005051	25627726	25676840	2761	18287										
TFIP11	0	genome.wustl.edu	37	chr22	26890269	26890269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tactgagccaagagcacagcAcctgccaaaaagaaaaatta	7	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	26890269	26890269	A	C	SNP	TFIP11	ENST00000405938	human	ensembl	69_37n	-1	known	missense	c.1994	p.V665G	1.000	pfam_GCFC_dom	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109	118	1	0.84	71	24	25.26	-	-	-	C	26890269	A	C	26890269	3	2	232	1	0	0	0	0	1	0	0	0	15902	173	6	5	527	5	TFIP11	22	26890269	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1262543	26890269	24414297	2762	18288										
AP1B1	0	genome.wustl.edu	37	chr22	29755824	29755824	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgctcaccttcacaaaggTgttgacggccataatggcca	9	12	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	29755824	29755824	T	G	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.268	p.T90P	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	70	0	0	39	12	23.53	-	-	-	G	29755824	T	G	29755824	3	3	232	1	0	0	0	0	1	0	0	0	732	1696	59	5	2661	5	AP1B1	22	29755824	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2865555	29755824	21548742	2763	18289										
NEFH	0	genome.wustl.edu	37	chr22	29886250	29886250	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggaggctccaaagcccaaggTggaggagaagaaggaacctg	16	8	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	29886250	29886250	T	G	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.2621	p.V874G	0.000	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	77	0	0	79	18	18.37	-	-	-	G	29886250	T	G	29886250	3	3	232	1	0	0	0	0	1	0	0	0	10386	1696	59	5	2635	5	NEFH	22	29886250	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	130426	29886250	21418316	2764	18290										
NEFH	0	genome.wustl.edu	37	chr22	29886370	29886370	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggaggctcctgccaaggTggaggtgaaggaagacgcta	17	7	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	29886370	29886370	T	G	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.2741	p.V914G	0.495	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	92	0	0	88	24	21.43	-	-	-	G	29886370	T	G	29886370	3	3	232	1	0	0	0	0	1	0	0	0	10386	1696	59	5	2755	5	NEFH	22	29886370	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	120	29886370	21418196	2765	18291										
ASCC2	0	genome.wustl.edu	37	chr22	30198154	30198154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agatgagagagtccagttccAccccacacatggcagggccc	11	14	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	30198154	30198154	A	C	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	missense	c.1397	p.V466G	1.000	superfamily_UBA-like	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	33	0	0	29	6	17.14	-	-	-	C	30198154	A	C	30198154	3	2	232	1	0	0	0	0	1	0	0	0	1036	159	6	5	904	5	ASCC2	22	30198154	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	311784	30198154	21106412	2766	18292										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31837931	31837931	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaactggggatgccaaggTgggtgtttttctcccagttg	15	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	31837931	31837931	T	G	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.2380	p.T794P	1.000	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	150	1	0.66	95	28	22.4	-	-	-	G	31837931	T	G	31837931	3	3	232	1	0	0	0	0	1	0	0	0	5072	1696	59	5	589	5	EIF4ENIF1	22	31837931	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1639777	31837931	19466635	2767	18293										
SLC5A1	0	genome.wustl.edu	37	chr22	32480937	32480937	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatatgtctcacgtgaagggTggctgcatcctgtgtgggta	14	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	32480937	32480937	T	G	SNP	SLC5A1	ENST00000266088	human	ensembl	69_37n	1	known	silent	c.936	p.G312	0.114	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A1	HGNC	ENSG00000100170	225	0	0	200	30	12.88	-	-	-	G	32480937	T	G	32480937	2	3	232	1	0	0	0	0	0	0	0	1	14750	1683	59	5		5	SLC5A1	22	32480937	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	643006	32480937	18823629	2768	18294										
FBXO7	0	genome.wustl.edu	37	chr22	32887130	32887130	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actctctcgcctctttaaagAccagctggtgtatcctcttc	6	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	32887130	32887130	A	C	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	missense	c.929	p.D310A	1.000	pfam_Inhibitor_PI31	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	129	1	0.77	59	20	25.32	-	-	-	C	32887130	A	C	32887130	3	2	232	1	0	0	0	0	1	0	0	0	5806	275	10	5	992	5	FBXO7	22	32887130	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	406193	32887130	18417436	2769	18295										
FBXO7	0	genome.wustl.edu	37	chr22	32894237	32894237	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attctatcccaaccccttgcAccctaggccatttcctagct	4	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	32894237	32894237	A	C	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	missense	c.1289	p.H430P	0.017	superfamily_F-box_dom_cyclin-like	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	520	1	0.19	259	41	13.62	-	-	-	C	32894237	A	C	32894237	3	2	232	1	0	0	0	0	1	0	0	0	5806	159	6	5	1364	5	FBXO7	22	32894237	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7107	32894237	18410329	2770	18296										
ISX	0	genome.wustl.edu	37	chr22	35481649	35481649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgcatccttccacctccacAccccaaatggggcagcatct	6	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	35481649	35481649	A	C	SNP	ISX	ENST00000308700	human	ensembl	69_37n	1	known	missense	c.701	p.H234P	0.429	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ISX	HGNC	ENSG00000175329	188	1	0.52	151	43	22.05	-	-	-	C	35481649	A	C	35481649	3	2	232	1	0	0	0	0	1	0	0	0	7919	159	6	5	715	5	ISX	22	35481649	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2587412	35481649	15822917	2771	18297										
APOL5	0	genome.wustl.edu	37	chr22	36122801	36122801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcgaggctgctggcttttGtgttaataagtgtgtaaaag	12	4	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	36122801	36122801	G	A	SNP	APOL5	ENST00000249044	human	ensembl	69_37n	1	known	missense	c.686	p.C229Y	0.001	pfam_ApoL	pfam_ApoL	-	no_errors	APOL5	HGNC	ENSG00000128313	153	0	0	137	16	10.46	-	-	-	A	36122801	G	A	36122801	3	1	232	1	0	0	0	0	1	0	0	0	811	1377	48	4	696	4	APOL5	22	36122801	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	641152	36122801	15181765	2772	18298										
TXN2	0	genome.wustl.edu	37	chr22	36872820	36872820	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgtggtcatcaatatccAccttggccatcaccaccttc	6	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	36872820	36872820	A	C	SNP	TXN2	ENST00000216185	human	ensembl	69_37n	-1	known	missense	c.347	p.V116G	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Thioredoxin	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Thioredoxin	-	no_errors	TXN2	HGNC	ENSG00000100348	171	0	0	94	31	24.8	-	-	-	C	36872820	A	C	36872820	3	2	232	1	0	0	0	0	1	0	0	0	16888	159	6	5	161	5	TXN2	22	36872820	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	750019	36872820	14431746	2773	18299										
TRIOBP	0	genome.wustl.edu	37	chr22	38121492	38121492	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaacttgccatcccgggccAcctcttcctcccataaccca	4	20	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	38121492	38121492	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.2929	p.T977P	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	117	1	0.84	65	19	22.62	-	-	-	C	38121492	A	C	38121492	3	2	232	1	0	0	0	0	1	0	0	0	16649	159	6	5	2947	5	TRIOBP	22	38121492	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1248672	38121492	13183074	2774	18300										
CBY1	0	genome.wustl.edu	37	chr22	39066996	39066996	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatggccagtggatagcaggTgagctgcacttcctgccatt	12	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	39066996	39066996	T	G	SNP	CBY1	ENST00000216029	human	ensembl	69_37n	1	known	splice_site	c.184+2	e2+2	1.000	-	-	-	no_errors	CBY1	HGNC	ENSG00000100211	71	0	0	79	17	17.71	-	-	-	G	39066996	T	G	39066996	5	3	232	1	0	0	0	0	0	0	1	0	2750	1710	59	5	192	5	CBY1	22	39066996	Splice_Site	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	945504	39066996	12237570	2775	18301										
RPL3	0	genome.wustl.edu	37	chr22	39709673	39709673	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcacccgcttcttggttcccAccacacagcctttcagcatg	7	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	39709673	39709673	A	C	SNP	RPL3	ENST00000216146	human	ensembl	69_37n	-1	known	missense	c.1013	p.V338G	1.000	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3	HGNC	ENSG00000100316	189	0	0	119	20	14.39	-	-	-	C	39709673	A	C	39709673	3	2	232	1	0	0	0	0	1	0	0	0	13665	159	6	5	210	5	RPL3	22	39709673	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	642677	39709673	11594893	2776	18302										
RPL3	0	genome.wustl.edu	37	chr22	39713577	39713577	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcccacaatgcccacaaccAccatgggtggtgtctctaca	8	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	39713577	39713577	A	C	SNP	RPL3	ENST00000216146	human	ensembl	69_37n	-1	known	missense	c.254	p.V85G	1.000	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3	HGNC	ENSG00000100316	104	1	0.95	94	20	17.54	-	-	-	C	39713577	A	C	39713577	3	2	232	1	0	0	0	0	1	0	0	0	13665	159	6	5	989	5	RPL3	22	39713577	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3904	39713577	11590989	2777	18303										
CACNA1I	0	genome.wustl.edu	37	chr22	40030725	40030725	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttcctggaggagaacttcAccatgtgagttcatcccctg	10	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	40030725	40030725	A	C	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	missense	c.736	p.T246P	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	93	0	0	49	14	22.22	-	-	-	C	40030725	A	C	40030725	3	2	232	1	0	0	0	0	1	0	0	0	2571	159	6	5	754	5	CACNA1I	22	40030725	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	317148	40030725	11273841	2778	18304										
TNRC6B	0	genome.wustl.edu	37	chr22	40662548	40662548	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caagtaaacctgtgtctgggTggggtgaaggagggcagaat	17	5	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	40662548	40662548	T	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.2314	p.W772G	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	154	1	0.64	99	37	27.21	-	-	-	G	40662548	T	G	40662548	3	3	232	1	0	0	0	0	1	0	0	0	16436	1696	59	5	2453	5	TNRC6B	22	40662548	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	631823	40662548	10642018	2779	18305										
TNRC6B	0	genome.wustl.edu	37	chr22	40681696	40681696	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcacagcacaatcgagaggTctgcacacacccgtgcagcc	10	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	40681696	40681696	T	G	SNP	TNRC6B	ENST00000446273	human	ensembl	69_37n	1	putative	missense	c.2687	p.V896G	0.545	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNRC6B	HGNC	ENSG00000100354	249	2	0.8	197	25	11.26	-	-	-	G	40681696	T	G	40681696	3	3	232	1	0	0	0	0	1	0	0	0	16436	1654	58	5	3797	5	TNRC6B	22	40681696	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	19148	40681696	10622870	2780	18306										
MCHR1	0	genome.wustl.edu	37	chr22	41077396	41077396	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctctccttcatcagcatcAcccctgtgtggctgtatgcc	7	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41077396	41077396	A	C	SNP	MCHR1	ENST00000249016	human	ensembl	69_37n	1	known	missense	c.733	p.T245P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH1_rcpt,prints_MCH_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285	115	1	0.85	75	14	15.73	-	-	-	C	41077396	A	C	41077396	3	2	232	1	0	0	0	0	1	0	0	0	9453	159	6	5	739	5	MCHR1	22	41077396	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	395700	41077396	10227170	2781	18307										
EP300	0	genome.wustl.edu	37	chr22	41564860	41564860	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatggctctgactgccctccAcccaaccagaggtatgacta	8	14	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41564860	41564860	A	C	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	silent	c.4161	p.P1387	0.267	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	164	0	0	106	18	14.4	-	-	-	C	41564860	A	C	41564860	2	2	232	1	0	0	0	0	0	0	0	1	5185	146	6	5		5	EP300	22	41564860	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	487464	41564860	9739706	2782	18308										
EP300	0	genome.wustl.edu	37	chr22	41573463	41573463	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctcagactgctcagccAccccttccagggcccccacc	6	23	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41573463	41573463	A	C	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	silent	c.5748	p.P1916	0.984	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	118	1	0.83	113	27	19.29	-	-	-	C	41573463	A	C	41573463	2	2	232	1	0	0	0	0	0	0	0	1	5185	146	6	5		5	EP300	22	41573463	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8603	41573463	9731103	2783	18309										
RANGAP1	0	genome.wustl.edu	37	chr22	41657473	41657473	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaagcttctgccaaggcagTggcgccatcattctccagac	9	13	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41657473	41657473	T	G	SNP	RANGAP1	ENST00000356244	human	ensembl	69_37n	-1	known	missense	c.592	p.T198P	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401	41	0	0	38	10	20.41	-	-	-	G	41657473	T	G	41657473	3	3	232	1	0	0	0	0	1	0	0	0	13116	1696	59	5	1215	5	RANGAP1	22	41657473	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	84010	41657473	9647093	2784	18310										
ZC3H7B	0	genome.wustl.edu	37	chr22	41735178	41735178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctttggcccagagctggacAccctcctggactcgctggtg	12	14	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41735178	41735178	A	C	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.799	p.T267P	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	50	0	0	32	16	33.33	-	-	-	C	41735178	A	C	41735178	3	2	232	1	0	0	0	0	1	0	0	0	17669	159	6	5	829	5	ZC3H7B	22	41735178	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	77705	41735178	9569388	2785	18311										
PMM1	0	genome.wustl.edu	37	chr22	41982380	41982380	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcaggtctgcaatcccaacActttgcgaggccaaggcaga	10	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	41982380	41982380	A	C	SNP	PMM1	ENST00000466645	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	PMM1	HGNC	ENSG00000100417	17	0	0	17	5	22.73	-	-	-	C	41982380	A	C	41982380	1	2	232	0	1	0	0	0	0	0	0	0	12210	174	6	5		5	PMM1	22	41982380	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	247202	41982380	9322186	2786	18312										
MEI1	0	genome.wustl.edu	37	chr22	42177506	42177506	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggttgtgtgtgtggctggTggtcataaggtcctttctgg	17	5	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42177506	42177506	T	G	SNP	MEI1	ENST00000476893	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEI1	HGNC	ENSG00000167077	18	0	0	16	5	23.81	-	-	-	G	42177506	T	G	42177506	1	3	232	0	1	0	0	0	0	0	0	0	9536	1711	59	5		5	MEI1	22	42177506	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	195126	42177506	9127060	2787	18313										
SREBF2	0	genome.wustl.edu	37	chr22	42267007	42267007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cggccctcaccgccctcaccAcccctatccagacggctgcc	7	23	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42267007	42267007	A	C	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	missense	c.835	p.T279P	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	104	1	0.95	84	33	28.21	-	-	-	C	42267007	A	C	42267007	3	2	232	1	0	0	0	0	1	0	0	0	15233	159	6	5	849	5	SREBF2	22	42267007	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	89501	42267007	9037559	2788	18314										
SEPT3	0	genome.wustl.edu	37	chr22	42392935	42392935	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctcctgggcactgtccttccAcctgtgccagccaccccctg	8	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42392935	42392935	A	C	SNP	SEPT3	ENST00000396426	human	ensembl	69_37n	1	known	silent	c.1041	p.P347	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167	150	0	0	76	23	23	-	-	-	C	42392935	A	C	42392935	2	2	232	1	0	0	0	0	0	0	0	1	14153	146	6	5		5	SEPT3	22	42392935	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	125928	42392935	8911631	2789	18315										
WBP2NL	0	genome.wustl.edu	37	chr22	42422936	42422936	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcttggatacggagccccAcctgcaggatatggagcccc	11	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42422936	42422936	A	C	SNP	WBP2NL	ENST00000328823	human	ensembl	69_37n	1	known	silent	c.681	p.P227	0.001	NULL	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2NL	HGNC	ENSG00000183066	305	2	0.65	217	33	13.1	-	-	-	C	42422936	A	C	42422936	2	2	232	1	0	0	0	0	0	0	0	1	17357	146	6	5		5	WBP2NL	22	42422936	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	30001	42422936	8881630	2790	18316										
TCF20	0	genome.wustl.edu	37	chr22	42605810	42605810	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgtaactccagctcagggccAccttctgaagtggtgggcac	12	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42605810	42605810	A	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	silent	c.5502	p.G1834	0.886	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	444	3	0.67	277	41	12.77	-	-	-	C	42605810	A	C	42605810	2	2	232	1	0	0	0	0	0	0	0	1	15785	146	6	5		5	TCF20	22	42605810	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	182874	42605810	8698756	2791	18317										
TCF20	0	genome.wustl.edu	37	chr22	42607082	42607082	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actaggtccgaagccacctcAccttttctcttctctatgtc	5	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42607082	42607082	A	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	silent	c.4230	p.G1410	0.777	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	301	1	0.33	142	25	14.97	-	-	-	C	42607082	A	C	42607082	2	2	232	1	0	0	0	0	0	0	0	1	15785	146	6	5		5	TCF20	22	42607082	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1272	42607082	8697484	2792	18318										
TCF20	0	genome.wustl.edu	37	chr22	42609386	42609386	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgactggtttcctttgccccAccattgctaggtggcctttg	10	12	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42609386	42609386	A	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	silent	c.1926	p.G642	0.033	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	243	2	0.82	116	23	16.55	-	-	-	C	42609386	A	C	42609386	2	2	232	1	0	0	0	0	0	0	0	1	15785	146	6	5		5	TCF20	22	42609386	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2304	42609386	8695180	2793	18319										
TCF20	0	genome.wustl.edu	37	chr22	42609449	42609449	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgggagcctttatcttgtccAccaggcttttctacccgacc	8	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42609449	42609449	A	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	silent	c.1863	p.G621	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	232	0	0	115	24	17.27	-	-	-	C	42609449	A	C	42609449	2	2	232	1	0	0	0	0	0	0	0	1	15785	146	6	5		5	TCF20	22	42609449	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	63	42609449	8695117	2794	18320										
TCF20	0	genome.wustl.edu	37	chr22	42609495	42609495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggcttcccgggagacaatcAccccaacagtcttctcatta	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	42609495	42609495	A	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.1817	p.V606G	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	247	2	0.8	123	25	16.78	-	-	-	C	42609495	A	C	42609495	3	2	232	1	0	0	0	0	1	0	0	0	15785	159	6	5	4103	5	TCF20	22	42609495	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	46	42609495	8695071	2795	18321										
TTLL1	0	genome.wustl.edu	37	chr22	43435887	43435887	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agctcccggtcagccccgtcAccctgggccaattcttcatc	8	18	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	43435887	43435887	A	C	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	silent	c.1167	p.G389	0.072	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	106	0	0	72	20	21.28	-	-	-	C	43435887	A	C	43435887	2	2	232	1	0	0	0	0	0	0	0	1	16819	146	6	5		5	TTLL1	22	43435887	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	826392	43435887	7868679	2796	18322										
EFCAB6	0	genome.wustl.edu	37	chr22	44131782	44131782	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatacagaaggtctccagaAcccttcttagctcctgcggt	8	13	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	44131782	44131782	A	C	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.599	p.V200G	0.038	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	327	0	0	392	44	10.09	-	-	-	C	44131782	A	C	44131782	3	2	232	1	0	0	0	0	1	0	0	0	4974	43	2	5	4010	5	EFCAB6	22	44131782	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	695895	44131782	7172784	2797	18323										
PARVB	0	genome.wustl.edu	37	chr22	44395435	44395435	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggaggctggagctgagacgTgggtgttcctgcagctgggg	20	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	44395435	44395435	T	G	SNP	PARVB	ENST00000406477	human	ensembl	69_37n	1	known	silent	c.93	p.R31	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677	111	0	0	71	15	17.44	-	-	-	G	44395435	T	G	44395435	2	3	232	1	0	0	0	0	0	0	0	1	11542	1683	59	5		5	PARVB	22	44395435	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	263653	44395435	6909131	2798	18324										
SMC1B	0	genome.wustl.edu	37	chr22	45785696	45785696	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaggctacaacaatggcagTgatgaaccggccaaaaacct	10	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	45785696	45785696	T	G	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	missense	c.1627	p.T543P	0.991	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	158	0	0	137	17	11.04	-	-	-	G	45785696	T	G	45785696	3	3	232	1	0	0	0	0	1	0	0	0	14871	1696	59	5	2144	5	SMC1B	22	45785696	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1390261	45785696	5518870	2799	18325										
GTSE1	0	genome.wustl.edu	37	chr22	46724632	46724632	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagacagattccaggctggTggatgtgtcccctgacaggg	14	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	22	46724632	46724632	T	G	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1772	p.V591G	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	89	0	0	64	18	21.95	-	-	-	G	46724632	T	G	46724632	3	3	232	1	0	0	0	0	1	0	0	0	6936	1696	59	5	1806	5	GTSE1	22	46724632	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	938936	46724632	4579934	2800	18326										
CSF2RA	0	genome.wustl.edu	37	chrX	1407919	1407919	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgcaatgcaatggtgccAcctcggctcactgcaacctc	10	15	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	1407919	1407919	A	C	SNP	CSF2RA	ENST00000478256	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223	24	0	0	53	17	24.29	-	-	-	C	1407919	A	C	1407919	1	2	232	0	1	0	0	0	0	0	0	0	3966	174	6	5		5	CSF2RA	23	1407919	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09		1407919	153862641	2801	18327										
MXRA5	0	genome.wustl.edu	37	chrX	3238469	3238469	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cattactggggcaggagaagTgggtatctggggtctccggg	18	7	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	3238469	3238469	T	G	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5257	p.T1753P	0.066	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	91	0	0	87	16	15.53	-	-	-	G	3238469	T	G	3238469	3	3	232	1	0	0	0	0	1	0	0	0	10075	1696	59	5	3241	5	MXRA5	23	3238469	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1830550	3238469	152032091	2802	18328										
NLGN4X	0	genome.wustl.edu	37	chrX	5811277	5811277	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgacgccccgacggcaatggTgacacttaattcggtggaat	12	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	5811277	5811277	T	G	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.2092	p.T698P	1.000	prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	229	1	0.43	132	18	11.84	-	-	-	G	5811277	T	G	5811277	3	3	232	1	0	0	0	0	1	0	0	0	10536	1696	59	5	422	5	NLGN4X	23	5811277	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2572808	5811277	149459283	2803	18329										
KAL1	0	genome.wustl.edu	37	chrX	8503572	8503572	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaggtagccacctctgaaggTcagtaaaaaggagcagtaga	13	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	8503572	8503572	T	G	SNP	KAL1	ENST00000481896	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KAL1	HGNC	ENSG00000011201	41	0	0	33	7	17.5	-	-	-	G	8503572	T	G	8503572	1	3	232	0	1	0	0	0	0	0	0	0	8028	1682	58	5		5	KAL1	23	8503572	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2692295	8503572	146766988	2804	18330										
FRMPD4	0	genome.wustl.edu	37	chrX	12627996	12627996	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtggtcgttcgctcagtaacAccaggtaagcacccaatccc	9	14	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	12627996	12627996	A	C	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	silent	c.315	p.T105	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	99	1	1	73	20	21.51	-	-	-	C	12627996	A	C	12627996	2	2	232	1	0	0	0	0	0	0	0	1	6108	146	6	5		5	FRMPD4	23	12627996	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4124424	12627996	142642564	2805	18331										
FRMPD4	0	genome.wustl.edu	37	chrX	12734317	12734317	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agattcaaagcagaagacggTggagatcacagacagcacca	11	9	2	5			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	12734317	12734317	T	G	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.1739	p.V580G	0.152	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	300	0	0	240	27	10.11	-	-	-	G	12734317	T	G	12734317	3	3	232	1	0	0	0	0	1	0	0	0	6108	1696	59	5	1797	5	FRMPD4	23	12734317	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	106321	12734317	142536243	2806	18332										
FRMPD4	0	genome.wustl.edu	37	chrX	12735141	12735141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctcattgacgctgtgcccAccagcgccgaaggcaagtgt	11	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	12735141	12735141	A	C	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.2563	p.T855P	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	167	1	0.6	177	29	14.08	-	-	-	C	12735141	A	C	12735141	3	2	232	1	0	0	0	0	1	0	0	0	6108	159	6	5	2621	5	FRMPD4	23	12735141	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	824	12735141	142535419	2807	18333										
TLR8	0	genome.wustl.edu	37	chrX	12939336	12939336	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagtcataacaggatttcccAcctaccctctggctttcttt	6	13	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	12939336	12939336	A	C	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.2177	p.H726P	0.104	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	245	0	0	226	32	12.4	-	-	-	C	12939336	A	C	12939336	3	2	232	1	0	0	0	0	1	0	0	0	16052	159	6	5	2183	5	TLR8	23	12939336	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	204195	12939336	142331224	2808	18334										
TLR8	0	genome.wustl.edu	37	chrX	12939870	12939870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gataaatgagctgcgctaccAccttgaagagagccgagaca	11	10	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	12939870	12939870	A	C	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.2711	p.H904P	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	202	0	0	198	26	11.61	-	-	-	C	12939870	A	C	12939870	3	2	232	1	0	0	0	0	1	0	0	0	16052	159	6	5	2717	5	TLR8	23	12939870	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	534	12939870	142330690	2809	18335										
TCEANC	0	genome.wustl.edu	37	chrX	13680713	13680713	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttgaggatcttggcaaccAccttactgagctagaaacaa	8	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	13680713	13680713	A	C	SNP	TCEANC	ENST00000314720	human	ensembl	69_37n	1	known	missense	c.176	p.H59P	0.989	pfam_TFIIS_N,superfamily_TFIIS_N,pirsf_TF_IIS-rel	pfam_TFIIS_cen_dom,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFS2M,pirsf_TF_IIS-rel	-	no_errors	TCEANC	HGNC	ENSG00000176896	146	0	0	189	24	11.27	-	-	-	C	13680713	A	C	13680713	3	2	232	1	0	0	0	0	1	0	0	0	15773	159	6	5	182	5	TCEANC	23	13680713	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	740843	13680713	141589847	2810	18336										
RAB9A	0	genome.wustl.edu	37	chrX	13727289	13727289	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaagaagcccaagcttggTgcagggacaacggcgactat	13	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	13727289	13727289	T	G	SNP	RAB9A	ENST00000464506	human	ensembl	69_37n	1	known	missense	c.424	p.C142G	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9A	HGNC	ENSG00000123595	221	2	0.9	218	27	11.02	-	-	-	G	13727289	T	G	13727289	3	3	232	1	0	0	0	0	1	0	0	0	13041	1696	59	5	426	5	RAB9A	23	13727289	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	46576	13727289	141543271	2811	18337										
PIR	0	genome.wustl.edu	37	chrX	15425670	15425670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgtaaatgaagcttgtccAccctggaaaggaccagcaac	10	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15425670	15425670	A	C	SNP	PIR	ENST00000380420	human	ensembl	69_37n	-1	known	missense	c.568	p.W190G	0.999	pfam_Pirin_C_dom,superfamily_RmlC_Cupin,pirsf_Pirin	pfam_Pirin_C_dom,pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	-	no_errors	PIR	HGNC	ENSG00000087842	382	0	0	340	38	10	-	-	-	C	15425670	A	C	15425670	3	2	232	1	0	0	0	0	1	0	0	0	12018	159	6	5	320	5	PIR	23	15425670	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1698381	15425670	139844890	2812	18338										
PIR	0	genome.wustl.edu	37	chrX	15477804	15477804	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaatctcctgggttcattttAccagtgtgtccacagaagtc	8	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15477804	15477804	A	C	SNP	PIR	ENST00000380420	human	ensembl	69_37n	-1	known	silent	c.249	p.G83	0.052	pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	pfam_Pirin_C_dom,pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	-	no_errors	PIR	HGNC	ENSG00000087842	534	0	0	490	55	10.05	-	-	-	C	15477804	A	C	15477804	2	2	232	1	0	0	0	0	0	0	0	1	12018	378	14	5		5	PIR	23	15477804	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	52134	15477804	139792756	2813	18339										
BMX	0	genome.wustl.edu	37	chrX	15536099	15536099	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagaaacacagagttcccAccttcccagacagagtggta	9	11	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15536099	15536099	A	C	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.493	p.T165P	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	193	0	0	129	26	16.67	-	-	-	C	15536099	A	C	15536099	3	2	232	1	0	0	0	0	1	0	0	0	1478	159	6	5	511	5	BMX	23	15536099	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	58295	15536099	139734461	2814	18340										
BMX	0	genome.wustl.edu	37	chrX	15540568	15540568	+	Missense_Mutation	SNP	T	T	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatcaaagaaaaactatggcTcccagccaccatcttcaagt							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15540568	15540568	T	C	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.610	p.S204P	0.007	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	455	2	0.44	370	81	17.96	-	-	-	C	15540568	T	C	15540568	3	2	232	1	0	0	0	0	1	0	0	0	1478	1551	54	5	632	5	BMX	23	15540568	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4469	15540568	139729992	2815	18341	200	2								
BMX	0	genome.wustl.edu	37	chrX	15540576	15540576	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaaactatggctcccagccAccatcttcaagtaccagtct							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15540576	15540576	A	C	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	silent	c.618	p.P206	0.079	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	440	1	0.23	374	60	13.79	-	-	-	C	15540576	A	C	15540576	2	2	232	1	0	0	0	0	0	0	0	1	1478	146	6	5		5	BMX	23	15540576	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	8	15540576	139729984	2816	18342	200	2								
BMX	0	genome.wustl.edu	37	chrX	15540589	15540589	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccagccaccatcttcaagtAccagtctagcgcaatatgac	6	15	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15540589	15540589	A	C	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.631	p.T211P	0.063	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	432	0	0	375	42	10.07	-	-	-	C	15540589	A	C	15540589	3	2	232	1	0	0	0	0	1	0	0	0	1478	391	14	5	653	5	BMX	23	15540589	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13	15540589	139729971	2817	18343										
ACE2	0	genome.wustl.edu	37	chrX	15596418	15596418	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaggaagtcgtccattgtcAcctttgtgcacataaggatc	9	10	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15596418	15596418	A	C	SNP	ACE2	ENST00000252519	human	ensembl	69_37n	-1	known	missense	c.1091	p.V364G	0.998	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234	155	0	0	146	25	14.62	-	-	-	C	15596418	A	C	15596418	3	2	232	1	0	0	0	0	1	0	0	0	137	159	6	5	1366	5	ACE2	23	15596418	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	55829	15596418	139674142	2818	18344										
ACE2	0	genome.wustl.edu	37	chrX	15607528	15607528	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgtagtcatagccatctAccccatttacttcatagtct	6	12	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15607528	15607528	A	C	SNP	ACE2	ENST00000252519	human	ensembl	69_37n	-1	known	missense	c.635	p.V212G	0.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234	390	2	0.51	358	45	11.08	-	-	-	C	15607528	A	C	15607528	3	2	232	1	0	0	0	0	1	0	0	0	137	391	14	5	1838	5	ACE2	23	15607528	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11110	15607528	139663032	2819	18345										
ZRSR2	0	genome.wustl.edu	37	chrX	15833901	15833901	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgcaggagggatgactatgAccctgacgcaagcctggagt	15	9	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	15833901	15833901	A	C	SNP	ZRSR2	ENST00000307771	human	ensembl	69_37n	1	known	missense	c.659	p.D220A	1.000	smart_RRM_dom_euk,pfscan_RRM_dom	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,prints_U2_small,pfscan_RRM_dom	-	no_errors	ZRSR2	HGNC	ENSG00000169249	124	0	0	114	27	19.15	-	-	-	C	15833901	A	C	15833901	3	2	232	1	0	0	0	0	1	0	0	0	18318	275	10	5	689	5	ZRSR2	23	15833901	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	226373	15833901	139436659	2820	18346										
GRPR	0	genome.wustl.edu	37	chrX	16142183	16142183	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgtgaacgatgactggtcccAcccggggatcctctatgtca	11	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	16142183	16142183	A	C	SNP	GRPR	ENST00000380289	human	ensembl	69_37n	1	known	missense	c.107	p.H36P	0.999	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010	401	3	0.74	340	63	15.63	-	-	-	C	16142183	A	C	16142183	3	2	232	1	0	0	0	0	1	0	0	0	6859	159	6	5	109	5	GRPR	23	16142183	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	308282	16142183	139128377	2821	18347										
GRPR	0	genome.wustl.edu	37	chrX	16170721	16170721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtaccaacccctccgtggccAcctttagcctcatcaatgga	7	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	16170721	16170721	A	C	SNP	GRPR	ENST00000380289	human	ensembl	69_37n	1	known	missense	c.1108	p.T370P	1.000	prints_Gastrin_pep_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010	316	2	0.63	238	50	17.36	-	-	-	C	16170721	A	C	16170721	3	2	232	1	0	0	0	0	1	0	0	0	6859	159	6	5	1118	5	GRPR	23	16170721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28538	16170721	139099839	2822	18348										
NHS	0	genome.wustl.edu	37	chrX	17743896	17743896	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcccgagtgcccaggaccAccagcctactttgggcctgg	12	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	17743896	17743896	A	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.1607	p.H536P	0.993	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	467	2	0.43	403	72	15.03	-	-	-	C	17743896	A	C	17743896	3	2	232	1	0	0	0	0	1	0	0	0	10483	159	6	5	1734	5	NHS	23	17743896	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1573175	17743896	137526664	2823	18349										
NHS	0	genome.wustl.edu	37	chrX	17744668	17744668	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcccagagaatggccagggTgtaggggcttcccctggtct	16	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	17744668	17744668	T	G	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.2379	p.G793	0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	482	4	0.82	371	84	18.46	-	-	-	G	17744668	T	G	17744668	2	3	232	1	0	0	0	0	0	0	0	1	10483	1683	59	5		5	NHS	23	17744668	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	772	17744668	137525892	2824	18350										
NHS	0	genome.wustl.edu	37	chrX	17750086	17750086	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcgccagttccatcacttcAcccagcagtaatgtgacaac	7	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	17750086	17750086	A	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.4395	p.S1465	0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	266	1	0.37	197	31	13.6	-	-	-	C	17750086	A	C	17750086	2	2	232	1	0	0	0	0	0	0	0	1	10483	146	6	5		5	NHS	23	17750086	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5418	17750086	137520474	2825	18351										
SCML2	0	genome.wustl.edu	37	chrX	18323137	18323137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atctcctgtcaggcgacaccAcccagctgggaaaatatctc	8	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	18323137	18323137	A	C	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.685	p.W229G	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	442	1	0.23	534	74	12.13	-	-	-	C	18323137	A	C	18323137	3	2	232	1	0	0	0	0	1	0	0	0	13998	159	6	5	1453	5	SCML2	23	18323137	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	573051	18323137	136947423	2826	18352										
CDKL5	0	genome.wustl.edu	37	chrX	18622626	18622626	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcttagacttgaattctcccAccagcccaacccccaccaga	5	18	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	18622626	18622626	A	C	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.1582	p.T528P	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	423	3	0.7	382	89	18.86	-	-	-	C	18622626	A	C	18622626	3	2	232	1	0	0	0	0	1	0	0	0	3186	159	6	5	1624	5	CDKL5	23	18622626	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	299489	18622626	136647934	2827	18353										
PHKA2	0	genome.wustl.edu	37	chrX	18942526	18942526	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtgcgactgatggggaaggTgagtgtgggtctgcccgtca	19	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	18942526	18942526	T	G	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1687	p.T563P	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	85	0	0	86	20	18.87	-	-	-	G	18942526	T	G	18942526	3	3	232	1	0	0	0	0	1	0	0	0	11918	1696	59	5	2092	5	PHKA2	23	18942526	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	319900	18942526	136328034	2828	18354										
PHKA2	0	genome.wustl.edu	37	chrX	18944651	18944651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgcgatactctggacgttcAccccgtgtttcctcaataag	8	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	18944651	18944651	A	C	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1379	p.V460G	0.159	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	171	0	0	209	30	12.5	-	-	-	C	18944651	A	C	18944651	3	2	232	1	0	0	0	0	1	0	0	0	11918	159	6	5	2408	5	PHKA2	23	18944651	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2125	18944651	136325909	2829	18355										
MAP3K15	0	genome.wustl.edu	37	chrX	19392777	19392777	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtggatcttaaacatgcccAcctgcatttaagggagaggt	12	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	19392777	19392777	A	C	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.2591	p.V864G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	108	1	0.9	135	26	16.15	-	-	-	C	19392777	A	C	19392777	3	2	232	1	0	0	0	0	1	0	0	0	9320	173	6	5	1390	5	MAP3K15	23	19392777	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	448126	19392777	135877783	2830	18356										
SH3KBP1	0	genome.wustl.edu	37	chrX	19702029	19702029	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgaaaatgtctccaaagcccActcccttaactttcttgggc	6	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	19702029	19702029	A	C	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.638	p.V213G	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	301	2	0.66	350	53	13.12	-	-	-	C	19702029	A	C	19702029	3	2	232	1	0	0	0	0	1	0	0	0	14344	159	6	5	1427	5	SH3KBP1	23	19702029	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	309252	19702029	135568531	2831	18357										
SH3KBP1	0	genome.wustl.edu	37	chrX	19713836	19713836	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagtcttcccgttgagaacAccttcccaccatccttcctc	4	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	19713836	19713836	A	C	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	silent	c.414	p.G138	0.725	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	192	1	0.52	108	39	26.17	-	-	-	C	19713836	A	C	19713836	2	2	232	1	0	0	0	0	0	0	0	1	14344	146	6	5		5	SH3KBP1	23	19713836	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	11807	19713836	135556724	2832	18358										
MAP7D2	0	genome.wustl.edu	37	chrX	20060746	20060746	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcccccgcttcaccttctccAcctgtaggggacacaggata	9	16	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	20060746	20060746	A	C	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	missense	c.881	p.V294G	0.007	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	310	0	0	231	60	20.41	-	-	-	C	20060746	A	C	20060746	3	2	232	1	0	0	0	0	1	0	0	0	9339	173	6	5	1476	5	MAP7D2	23	20060746	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	346910	20060746	135209814	2833	18359										
ZNF645	0	genome.wustl.edu	37	chrX	22291960	22291960	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaaacagcattatgcgccAcctccatctccatcatcacc	4	17	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	22291960	22291960	A	C	SNP	ZNF645	ENST00000323684	human	ensembl	69_37n	1	known	silent	c.852	p.P284	0.001	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809	362	1	0.27	285	51	15.18	-	-	-	C	22291960	A	C	22291960	2	2	232	1	0	0	0	0	0	0	0	1	18157	146	6	5		5	ZNF645	23	22291960	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2231214	22291960	132978600	2834	18360										
ZFX	0	genome.wustl.edu	37	chrX	24225830	24225830	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcttccctgattgataggTggaactgtagacattgtgga	11	7	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	24225830	24225830	T	G	SNP	ZFX	ENST00000338565	human	ensembl	69_37n	1	known	missense	c.648	p.C216W	1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	248	1	0.4	234	29	11.03	-	-	-	G	24225830	T	G	24225830	3	3	232	1	0	0	0	0	1	0	0	0	17757	1710	59	5	812	5	ZFX	23	24225830	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1933870	24225830	131044730	2835	18361										
ZFX	0	genome.wustl.edu	37	chrX	24228424	24228424	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catgaaaaaccatcccgaacAccttgccaagaagaaatacc	5	13	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	24228424	24228424	A	C	SNP	ZFX	ENST00000540034	human	ensembl	69_37n	1	known	missense	c.1466	p.H489P	1.000	pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	283	0	0	230	30	11.54	-	-	-	C	24228424	A	C	24228424	3	2	232	1	0	0	0	0	1	0	0	0	17757	159	6	5	1434	5	ZFX	23	24228424	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2594	24228424	131042136	2836	18362										
POLA1	0	genome.wustl.edu	37	chrX	24906169	24906169	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtcgcaatcgaactcgtcAccttccccttcaattctccc	4	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	24906169	24906169	A	C	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.4094	p.H1365P	0.994	pfam_Znf_DNA-dir_DNA_pol_B_alpha	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	148	1	0.67	120	24	16.44	-	-	-	C	24906169	A	C	24906169	3	2	232	1	0	0	0	0	1	0	0	0	12261	159	6	5	4214	5	POLA1	23	24906169	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	677745	24906169	130364391	2837	18363										
MAGEB1	0	genome.wustl.edu	37	chrX	30269359	30269359	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttcatcacccaagatctggTgcaggaaaaatatctgaagt	9	8	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	30269359	30269359	T	G	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.749	p.V250G	0.118	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	140	0	0	131	16	10.81	-	-	-	G	30269359	T	G	30269359	3	3	232	1	0	0	0	0	1	0	0	0	9243	1696	59	5	751	5	MAGEB1	23	30269359	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5363190	30269359	125001201	2838	18364										
MAGEB1	0	genome.wustl.edu	37	chrX	30269644	30269644	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccattcagcaggtcctcccAccccatgtgagaactcaggc	8	17	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	30269644	30269644	A	C	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.1034	p.H345P	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	128	0	0	84	19	18.45	-	-	-	C	30269644	A	C	30269644	3	2	232	1	0	0	0	0	1	0	0	0	9243	159	6	5	1036	5	MAGEB1	23	30269644	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	285	30269644	125000916	2839	18365										
CXorf21	0	genome.wustl.edu	37	chrX	30578393	30578393	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcttccttttccccagccAcctgctcattataagaggca	5	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	30578393	30578393	A	C	SNP	CXorf21	ENST00000378962	human	ensembl	69_37n	-1	known	missense	c.80	p.V27G	0.065	NULL	NULL	-	no_errors	CXorf21	HGNC	ENSG00000120280	148	0	0	130	23	14.94	-	-	-	C	30578393	A	C	30578393	3	2	232	1	0	0	0	0	1	0	0	0	4132	159	6	5	829	5	CXorf21	23	30578393	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	308749	30578393	124692167	2840	18366										
DMD	0	genome.wustl.edu	37	chrX	32305721	32305721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagagcttcctgtagcttcAccctttccacaggcgttgca	9	13	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	32305721	32305721	A	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.6215	p.V2072G	0.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	125	0	0	94	15	13.64	-	-	-	C	32305721	A	C	32305721	3	2	232	1	0	0	0	0	1	0	0	0	4616	159	6	5	5138	5	DMD	23	32305721	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1727328	32305721	122964839	2841	18367										
FAM47C	0	genome.wustl.edu	37	chrX	37027247	37027247	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagcctcccaagactcaggTgtccagtctccacctggagc	10	15	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	37027247	37027247	T	G	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.764	p.V255G	0.280	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	305	2	0.65	275	31	10.03	-	-	-	G	37027247	T	G	37027247	3	3	232	1	0	0	0	0	1	0	0	0	5617	1696	59	5	766	5	FAM47C	23	37027247	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	4721526	37027247	118243313	2842	18368										
XK	0	genome.wustl.edu	37	chrX	37587560	37587560	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctttcagaggtggctcaggTgtttttgctgggcctgcagg	16	8	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	37587560	37587560	T	G	SNP	XK	ENST00000378616	human	ensembl	69_37n	1	known	missense	c.1180	p.C394G	0.002	NULL	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597	319	2	0.62	241	40	14.23	-	-	-	G	37587560	T	G	37587560	3	3	232	1	0	0	0	0	1	0	0	0	17528	1696	59	5	1190	5	XK	23	37587560	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	560313	37587560	117683000	2843	18369										
BCOR	0	genome.wustl.edu	37	chrX	39923696	39923696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agactttgcgtttcctgtccAcccggagggtggggctgtga	15	10	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	39923696	39923696	A	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3395	p.V1132G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	46	0	0	36	11	23.4	-	-	-	C	39923696	A	C	39923696	3	2	232	1	0	0	0	0	1	0	0	0	1390	159	6	5	1908	5	BCOR	23	39923696	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2336136	39923696	115346864	2844	18370										
USP9X	0	genome.wustl.edu	37	chrX	41075313	41075313	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaccttacacagttgcaggTgtcgcaaagctggaagggga	14	8	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	41075313	41075313	T	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	silent	c.5493	p.G1831	0.981	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	118	0	0	121	41	25.31	-	-	-	G	41075313	T	G	41075313	2	3	232	1	0	0	0	0	0	0	0	1	17187	1683	59	5		5	USP9X	23	41075313	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1151617	41075313	114195247	2845	18371										
USP9X	0	genome.wustl.edu	37	chrX	41075653	41075653	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catacaggcgccagaaaaggTggtggaatgcttatatactt	11	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	41075653	41075653	T	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.5833	p.W1945G	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	170	0	0	192	23	10.7	-	-	-	G	41075653	T	G	41075653	3	3	232	1	0	0	0	0	1	0	0	0	17187	1696	59	5	5967	5	USP9X	23	41075653	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	340	41075653	114194907	2846	18372										
CASK	0	genome.wustl.edu	37	chrX	41393988	41393988	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtacgcaaaccggtctgggTgctttgtgatgagagtgttt	15	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	41393988	41393988	T	G	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.2288	p.H763P	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	159	1	0.62	155	26	14.21	-	-	-	G	41393988	T	G	41393988	3	3	232	1	0	0	0	0	1	0	0	0	2690	1696	59	5	508	5	CASK	23	41393988	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	318335	41393988	113876572	2847	18373										
KDM6A	0	genome.wustl.edu	37	chrX	44949989	44949989	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgccagtataaattggcagTggaacggtacgaatggaaca	12	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	44949989	44949989	T	G	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.3779	p.V1260G	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	101	1	0.97	105	24	18.6	-	-	-	G	44949989	T	G	44949989	3	3	232	1	0	0	0	0	1	0	0	0	8190	1696	59	5	3860	5	KDM6A	23	44949989	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	3556001	44949989	110320571	2848	18374										
UBA1	0	genome.wustl.edu	37	chrX	47065731	47065731	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccaaaggcaatgtgcaggTggtgatccccttcctgacag	11	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	47065731	47065731	T	G	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.1826	p.V609G	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	56	0	0	51	12	19.05	-	-	-	G	47065731	T	G	47065731	3	3	232	1	0	0	0	0	1	0	0	0	16924	1696	59	5	1884	5	UBA1	23	47065731	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2115742	47065731	108204829	2849	18375										
UBA1	0	genome.wustl.edu	37	chrX	47070558	47070558	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtgcaggtccccgaattcAcccccaagtctggcgtcaag	10	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	47070558	47070558	A	C	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.2398	p.T800P	1.000	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	118	0	0	168	37	18.05	-	-	-	C	47070558	A	C	47070558	3	2	232	1	0	0	0	0	1	0	0	0	16924	159	6	5	2472	5	UBA1	23	47070558	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	4827	47070558	108200002	2850	18376										
SSX5	0	genome.wustl.edu	37	chrX	48054501	48054501	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgctggctggctctcttcccAccttccagaacggactgaga	10	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48054501	48054501	A	C	SNP	SSX5	ENST00000311798	human	ensembl	69_37n	-1	known	missense	c.134	p.V45G	0.000	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX5	HGNC	ENSG00000165583	131	0	0	125	19	13.19	-	-	-	C	48054501	A	C	48054501	3	2	232	1	0	0	0	0	1	0	0	0	15299	159	6	5	579	5	SSX5	23	48054501	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	983943	48054501	107216059	2851	18377										
PORCN	0	genome.wustl.edu	37	chrX	48374291	48374291	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cccccagggcttcagtttccAcctggctgcggtcctgctgt	11	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48374291	48374291	A	C	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	missense	c.1037	p.H346P	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	31	0	0	40	11	21.15	-	-	-	C	48374291	A	C	48374291	3	2	232	1	0	0	0	0	1	0	0	0	12332	159	6	5	1079	5	PORCN	23	48374291	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	319790	48374291	106896269	2852	18378										
TBC1D25	0	genome.wustl.edu	37	chrX	48419090	48419090	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaccctggaaagtccctgccAcctgtaccaccaatgggcct	9	16	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48419090	48419090	A	C	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	silent	c.1794	p.P598	0.006	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	86	0	0	67	17	20.24	-	-	-	C	48419090	A	C	48419090	2	2	232	1	0	0	0	0	0	0	0	1	15707	146	6	5		5	TBC1D25	23	48419090	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	44799	48419090	106851470	2853	18379										
GLOD5	0	genome.wustl.edu	37	chrX	48631920	48631920	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttccttcctgcaaacccccAcccaggcccagagatctcca	5	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48631920	48631920	A	C	SNP	GLOD5	ENST00000470676	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLOD5	HGNC	ENSG00000171433	113	1	0.88	120	42	25.61	-	-	-	C	48631920	A	C	48631920	1	2	232	0	1	0	0	0	0	0	0	0	6503	174	6	5		5	GLOD5	23	48631920	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	212830	48631920	106638640	2854	18380										
HDAC6	0	genome.wustl.edu	37	chrX	48672897	48672897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gcagggtaggttctggccccAcctgaaggcctctaactggt	13	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48672897	48672897	A	C	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.899	p.H300P	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	101	1	0.98	79	13	14.13	-	-	-	C	48672897	A	C	48672897	3	2	232	1	0	0	0	0	1	0	0	0	7062	159	6	5	895	5	HDAC6	23	48672897	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	40977	48672897	106597663	2855	18381										
HDAC6	0	genome.wustl.edu	37	chrX	48678616	48678616	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggttatgcccacctcacccAcctgctgatgggccttgcca	10	16	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48678616	48678616	A	C	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2333	p.H778P	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	76	0	0	47	16	25.4	-	-	-	C	48678616	A	C	48678616	3	2	232	1	0	0	0	0	1	0	0	0	7062	159	6	5	2377	5	HDAC6	23	48678616	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	5719	48678616	106591944	2856	18382										
TFE3	0	genome.wustl.edu	37	chrX	48887886	48887886	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggtggtcgctgggaaagTgcaggtccagaagggcatct	16	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	48887886	48887886	T	G	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	missense	c.1511	p.H504P	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	70	0	0	73	18	19.78	-	-	-	G	48887886	T	G	48887886	3	3	232	1	0	0	0	0	1	0	0	0	15895	1696	59	5	220	5	TFE3	23	48887886	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	209270	48887886	106382674	2857	18383										
CACNA1F	0	genome.wustl.edu	37	chrX	49072933	49072933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atcactgttgacccagagccGctcccggaccaggggccgtg	13	15	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	49072933	49072933	G	A	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.3178	p.R1060W	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	22	0	0	27	15	34.88	-	-	-	A	49072933	G	A	49072933	3	1	232	1	0	0	0	0	1	0	0	0	2568	1086	38	1	2843	1	CACNA1F	23	49072933	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	185047	49072933	106197627	2858	18384										
GAGE2C	0	genome.wustl.edu	37	chrX	49230849	49230849	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agggtcacccacagactgggTgtgagtgtgaagatggtcct	15	8	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	49230849	49230849	T	G	SNP	GAGE2C	ENST00000381708	human	ensembl	69_37n	1	known	missense	c.253	p.C85G	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE2C	HGNC	ENSG00000236249	324	1	0.31	297	103	25.75	-	-	-	G	49230849	T	G	49230849	3	3	232	1	0	0	0	0	1	0	0	0	6241	1696	59	5	997	5	GAGE2C	23	49230849	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	157916	49230849	106039711	2859	18385										
AKAP4	0	genome.wustl.edu	37	chrX	49959104	49959104	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgtctaaaaaaagaagaagAcctatccataagagtttggg	9	6	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	49959104	49959104	A	C	SNP	AKAP4	ENST00000480926	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.075	-	-	-	no_errors	AKAP4	HGNC	ENSG00000147081	67	0	0	32	17	34.69	-	-	-	C	49959104	A	C	49959104	1	2	232	0	1	0	0	0	0	0	0	0	453	290	10	5		5	AKAP4	23	49959104	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	728255	49959104	105311456	2860	18386										
BMP15	0	genome.wustl.edu	37	chrX	50659374	50659374	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcattgctccccctttctacAccccaaactactgtaaagga	4	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	50659374	50659374	A	C	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	1	known	missense	c.946	p.T316P	0.993	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	230	0	0	220	32	12.65	-	-	-	C	50659374	A	C	50659374	3	2	232	1	0	0	0	0	1	0	0	0	1463	159	6	5	952	5	BMP15	23	50659374	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	700270	50659374	104611186	2861	18387										
IQSEC2	0	genome.wustl.edu	37	chrX	53280313	53280313	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagacatgggccctgacgggTggcagttcagggcttcgtcg	16	11	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	53280313	53280313	T	G	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.1445	p.H482P	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	135	1	0.74	106	12	10.08	-	-	-	G	53280313	T	G	53280313	3	3	232	1	0	0	0	0	1	0	0	0	7872	1696	59	5	3065	5	IQSEC2	23	53280313	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2620939	53280313	101990247	2862	18388										
RIBC1	0	genome.wustl.edu	37	chrX	53454979	53454979	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaggccctgaacaaccaggTgggagaccgaaagcgtcggg	15	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	53454979	53454979	T	G	SNP	RIBC1	ENST00000375327	human	ensembl	69_37n	1	known	missense	c.146	p.V49G	0.980	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423	115	1	0.86	83	17	16.35	-	-	-	G	53454979	T	G	53454979	3	3	232	1	0	0	0	0	1	0	0	0	13436	1696	59	5	152	5	RIBC1	23	53454979	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	174666	53454979	101815581	2863	18389										
HUWE1	0	genome.wustl.edu	37	chrX	53596651	53596651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttacttcattcactagggccAcctgggcatctgtgccactc	8	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	53596651	53596651	A	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.6449	p.V2150G	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	190	0	0	174	34	16.27	-	-	-	C	53596651	A	C	53596651	3	2	232	1	0	0	0	0	1	0	0	0	7515	159	6	5	6823	5	HUWE1	23	53596651	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	141672	53596651	101673909	2864	18390										
WNK3	0	genome.wustl.edu	37	chrX	54278051	54278051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgaaggatctcctgggcttGacctacaatagctctcaatt	8	10	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	54278051	54278051	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	nonsense	c.2437	p.Q813*	0.966	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	71	0	0	56	14	20	-	-	-	A	54278051	G	A	54278051	4	1	232	1	0	0	0	0	0	1	0	0	17476	1299	45	2	3009	2	WNK3	23	54278051	Nonsense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	681400	54278051	100992509	2865	18391										
WNK3	0	genome.wustl.edu	37	chrX	54359807	54359807	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatatttaacttcttgtccAcctctcaacacatttgaagg	4	11	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	54359807	54359807	A	C	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	silent	c.300	p.G100	0.869	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	201	0	0	193	23	10.6	-	-	-	C	54359807	A	C	54359807	2	2	232	1	0	0	0	0	0	0	0	1	17476	146	6	5		5	WNK3	23	54359807	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	81756	54359807	100910753	2866	18392										
GNL3L	0	genome.wustl.edu	37	chrX	54578329	54578329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttctgacggcagtggcccAccgtttggggaagaagaaga	14	9	1	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	54578329	54578329	A	C	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.1103	p.H368P	0.997	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	208	0	0	253	30	10.53	-	-	-	C	54578329	A	C	54578329	3	2	232	1	0	0	0	0	1	0	0	0	6590	159	6	5	1145	5	GNL3L	23	54578329	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	218522	54578329	100692231	2867	18393										
ZC3H12B	0	genome.wustl.edu	37	chrX	64721841	64721841	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggatgtctagtgccaaaggTgagataacctcagaggtcaa	13	7	3	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	64721841	64721841	T	G	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	silent	c.1263	p.G421	0.995	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	125	0	0	81	20	19.8	-	-	-	G	64721841	T	G	64721841	2	3	232	1	0	0	0	0	0	0	0	1	17658	1683	59	5		5	ZC3H12B	23	64721841	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	10143512	64721841	90548719	2868	18394										
HEPH	0	genome.wustl.edu	37	chrX	65486389	65486389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttttggttgccattagtgtcAcccttctgctcgttgttctg	9	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	65486389	65486389	A	C	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.3514	p.T1172P	0.004	NULL	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	211	1	0.47	140	30	17.65	-	-	-	C	65486389	A	C	65486389	3	2	232	1	0	0	0	0	1	0	0	0	7105	159	6	5	3596	5	HEPH	23	65486389	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	764548	65486389	89784171	2869	18395										
OPHN1	0	genome.wustl.edu	37	chrX	67412614	67412614	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acgattgactctgcccagggTgggcaagtatgtgtatgttt	13	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	67412614	67412614	T	G	SNP	OPHN1	ENST00000467444	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OPHN1	HGNC	ENSG00000079482	35	0	0	28	12	30	-	-	-	G	67412614	T	G	67412614	1	3	232	0	1	0	0	0	0	0	0	0	10948	1711	59	5		5	OPHN1	23	67412614	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1926225	67412614	87857946	2870	18396										
MED12	0	genome.wustl.edu	37	chrX	70345253	70345253	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttggtcgtactgtttggggTgggaaagcagcgagatgatg	18	4	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	70345253	70345253	T	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.2279	p.V760G	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	116	1	0.85	100	27	21.26	-	-	-	G	70345253	T	G	70345253	3	3	232	1	0	0	0	0	1	0	0	0	9499	1696	59	5	2341	5	MED12	23	70345253	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2932639	70345253	84925307	2871	18397										
NLGN3	0	genome.wustl.edu	37	chrX	70389987	70389987	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caatctccaggctccctcccTcccagatccaggaacacatg	6	18	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	70389987	70389987	T	C	SNP	NLGN3	ENST00000476589	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.942	-	-	-	no_errors	NLGN3	HGNC	ENSG00000196338	27	0	0	47	12	20.34	-	-	-	C	70389987	T	C	70389987	1	2	232	0	1	0	0	0	0	0	0	0	10535	1566	54	5		5	NLGN3	23	70389987	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	44734	70389987	84880573	2872	18398										
ERCC6L	0	genome.wustl.edu	37	chrX	71425225	71425225	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttcgccactgctttcctccAccccttcttctggataatct	4	17	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	71425225	71425225	A	C	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.3392	p.V1131G	0.272	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	260	0	0	173	24	12.12	-	-	-	C	71425225	A	C	71425225	3	2	232	1	0	0	0	0	1	0	0	0	5255	159	6	5	364	5	ERCC6L	23	71425225	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1035238	71425225	83845335	2873	18399										
ERCC6L	0	genome.wustl.edu	37	chrX	71426165	71426165	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagttcttctacacttccaaAcccctttggtaaagtagcta	5	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	71426165	71426165	A	C	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.2452	p.F818V	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	256	1	0.39	165	23	12.23	-	-	-	C	71426165	A	C	71426165	3	2	232	1	0	0	0	0	1	0	0	0	5255	43	2	5	1304	5	ERCC6L	23	71426165	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	940	71426165	83844395	2874	18400										
PHKA1	0	genome.wustl.edu	37	chrX	71800899	71800899	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caggaactcctgcacgtaggTggcggctgccttggagaggt	16	10	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	71800899	71800899	T	G	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.3676	p.T1226P	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	64	0	0	47	22	31.88	-	-	-	G	71800899	T	G	71800899	3	3	232	1	0	0	0	0	1	0	0	0	11917	1696	59	5	50	5	PHKA1	23	71800899	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	374734	71800899	83469661	2875	18401										
NAP1L2	0	genome.wustl.edu	37	chrX	72434143	72434143	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gacccagcagcagtatcttcAccgttttccccttcttcccc	5	18	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	72434143	72434143	A	C	SNP	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	silent	c.186	p.G62	0.405	NULL	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	205	2	0.97	159	31	16.32	-	-	-	C	72434143	A	C	72434143	2	2	232	1	0	0	0	0	0	0	0	1	10229	146	6	5		5	NAP1L2	23	72434143	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	633244	72434143	82836417	2876	18402										
ABCB7	0	genome.wustl.edu	37	chrX	74289282	74289282	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctgaaggggagatgccatcActttgtcctagcagggaaga	13	8	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	74289282	74289282	A	C	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.1376	p.V459G	0.012	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	152	1	0.65	117	19	13.97	-	-	-	C	74289282	A	C	74289282	3	2	232	1	0	0	0	0	1	0	0	0	46	159	6	5	909	5	ABCB7	23	74289282	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1855139	74289282	80981278	2877	18403										
MAGEE2	0	genome.wustl.edu	37	chrX	75004014	75004014	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctttctttggttttgtcAccttccagggccttattata	6	10	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	75004014	75004014	A	C	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	silent	c.873	p.G291	0.053	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	183	0	0	174	22	11.17	-	-	-	C	75004014	A	C	75004014	2	2	232	1	0	0	0	0	0	0	0	1	9257	146	6	5		5	MAGEE2	23	75004014	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	714732	75004014	80266546	2878	18404										
ATP7A	0	genome.wustl.edu	37	chrX	77298177	77298177	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggggaaacgggtagcaatggTgggagatggaatcaatgact	17	4	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	77298177	77298177	T	G	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.3896	p.V1299G	1.000	pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	296	0	0	187	41	17.98	-	-	-	G	77298177	T	G	77298177	3	3	232	1	0	0	0	0	1	0	0	0	1194	1696	59	5	3970	5	ATP7A	23	77298177	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2294163	77298177	77972383	2879	18405										
PGK1	0	genome.wustl.edu	37	chrX	77380825	77380825	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggctttcattcaacaggTggtggagacactgccacttg	11	11	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	77380825	77380825	T	G	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	silent	c.1116	p.G372	0.999	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	154	0	0	177	23	11.44	-	-	-	G	77380825	T	G	77380825	2	3	232	1	0	0	0	0	0	0	0	1	11864	1710	59	5		5	PGK1	23	77380825	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	82648	77380825	77889735	2880	18406										
LPAR4	0	genome.wustl.edu	37	chrX	78010754	78010754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgggagcatgctctttctcAcctgtattagtgtggatcgt	11	8	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	78010754	78010754	A	C	SNP	LPAR4	ENST00000373301	human	ensembl	69_37n	1	known	missense	c.388	p.T130P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2Y5_purnocptor,prints_P2_purnocptor	-	no_errors	LPAR4	HGNC	ENSG00000147145	293	0	0	191	37	16.23	-	-	-	C	78010754	A	C	78010754	3	2	232	1	0	0	0	0	1	0	0	0	8973	159	6	5	390	5	LPAR4	23	78010754	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	629929	78010754	77259806	2881	18407										
P2RY10	0	genome.wustl.edu	37	chrX	78216877	78216877	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccgaatcgcactgtatttccAccctttttgcctgtgccttg	7	14	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	78216877	78216877	A	C	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.860	p.H287P	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	662	1	0.15	486	75	13.37	-	-	-	C	78216877	A	C	78216877	3	2	232	1	0	0	0	0	1	0	0	0	11420	159	6	5	862	5	P2RY10	23	78216877	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	206123	78216877	77053683	2882	18408										
BRWD3	0	genome.wustl.edu	37	chrX	79948515	79948515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actctccacagtcccaaaccAccaggcgtcatctattatac	4	16	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	79948515	79948515	A	C	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.3187	p.W1063G	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	305	2	0.65	245	37	13.12	-	-	-	C	79948515	A	C	79948515	3	2	232	1	0	0	0	0	1	0	0	0	1534	159	6	5	2277	5	BRWD3	23	79948515	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1731638	79948515	75322045	2883	18409										
BRWD3	0	genome.wustl.edu	37	chrX	79999579	79999579	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccctgaaggactgcaacgggTgcacaagttcgaagacacca	11	12	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	79999579	79999579	T	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.765	p.A255	1.000	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	241	0	0	213	43	16.73	-	-	-	G	79999579	T	G	79999579	2	3	232	1	0	0	0	0	0	0	0	1	1534	1683	59	5		5	BRWD3	23	79999579	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	51064	79999579	75270981	2884	18410										
SH3BGRL	0	genome.wustl.edu	37	chrX	80553021	80553021	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgattttacaaagaaaacAcccttccctccttctgccat	3	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	80553021	80553021	A	C	SNP	SH3BGRL	ENST00000463546	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH3BGRL	HGNC	ENSG00000131171	9	0	0	2	5	71.43	-	-	-	C	80553021	A	C	80553021	1	2	232	0	1	0	0	0	0	0	0	0	14329	174	6	5		5	SH3BGRL	23	80553021	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	553442	80553021	74717539	2885	18411										
DACH2	0	genome.wustl.edu	37	chrX	85404052	85404052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catccagcccggggtaaaccGctgcaaactcatcaccagga	9	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	85404052	85404052	G	A	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	missense	c.428	p.R143H	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	89	0	0	64	26	27.96	-	-	-	A	85404052	G	A	85404052	3	1	232	1	0	0	0	0	1	0	0	0	4253	1087	38	1	430	1	DACH2	23	85404052	Missense_Mutation	SNP	G	TCGA-A8-A0A6-01A-12W-A071-09	4851031	85404052	69866508	2886	18412										
PCDH11X	0	genome.wustl.edu	37	chrX	91873600	91873600	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actgcacttcaccacagcccAccatcagcacaggcctcagc	6	19	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	91873600	91873600	A	C	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	silent	c.3705	p.P1235	0.026	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	376	2	0.53	263	43	13.96	-	-	-	C	91873600	A	C	91873600	2	2	232	1	0	0	0	0	0	0	0	1	11581	146	6	5		5	PCDH11X	23	91873600	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	6469548	91873600	63396960	2887	18413										
NAP1L3	0	genome.wustl.edu	37	chrX	92927657	92927657	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttccttttcttcatccttcAcctcaggaatttctttagga	4	12	5	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	92927657	92927657	A	C	SNP	NAP1L3	ENST00000373079	human	ensembl	69_37n	-1	known	missense	c.647	p.V216G	0.003	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310	269	0	0	186	28	13.08	-	-	-	C	92927657	A	C	92927657	3	2	232	1	0	0	0	0	1	0	0	0	10230	159	6	5	877	5	NAP1L3	23	92927657	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1054057	92927657	62342903	2888	18414										
NOX1	0	genome.wustl.edu	37	chrX	100103625	100103625	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaaatatacttacttggggTgggaggtagctattgtagaa	13	3	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100103625	100103625	T	G	SNP	NOX1	ENST00000372966	human	ensembl	69_37n	-1	known	missense	c.1562	p.H521P	0.671	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952	92	0	0	157	35	18.23	-	-	-	G	100103625	T	G	100103625	3	3	232	1	0	0	0	0	1	0	0	0	10628	1696	59	5	140	5	NOX1	23	100103625	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	7175968	100103625	55166935	2889	18415										
XKRX	0	genome.wustl.edu	37	chrX	100183173	100183173	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccccacagtacaaaaaggTggagaaaaggatgctaaatg	10	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100183173	100183173	T	G	SNP	XKRX	ENST00000328526	human	ensembl	69_37n	-1	known	missense	c.160	p.T54P	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489	336	0	0	261	54	17.09	-	-	-	G	100183173	T	G	100183173	3	3	232	1	0	0	0	0	1	0	0	0	17536	1696	59	5	1240	5	XKRX	23	100183173	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	79548	100183173	55087387	2890	18416										
TMEM35	0	genome.wustl.edu	37	chrX	100349755	100349755	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttggctgtgctcttcttccAccagctggtcggtgatcctc	11	13	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100349755	100349755	A	C	SNP	TMEM35	ENST00000372930	human	ensembl	69_37n	1	known	missense	c.314	p.H105P	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950	148	1	0.67	192	54	21.86	-	-	-	C	100349755	A	C	100349755	3	2	232	1	0	0	0	0	1	0	0	0	16252	159	6	5	320	5	TMEM35	23	100349755	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	166582	100349755	54920805	2891	18417										
DRP2	0	genome.wustl.edu	37	chrX	100486736	100486736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atagcagcagcctccgaagcAcctgcccccaccctcaggta	8	18	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100486736	100486736	A	C	SNP	DRP2	ENST00000395209	human	ensembl	69_37n	1	known	missense	c.100	p.T34P	0.001	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385	166	0	0	129	29	18.35	-	-	-	C	100486736	A	C	100486736	3	2	232	1	0	0	0	0	1	0	0	0	4799	159	6	5	102	5	DRP2	23	100486736	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	136981	100486736	54783824	2892	18418										
HNRNPH2	0	genome.wustl.edu	37	chrX	100668170	100668170	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatggtagccaaatgatgggAgggatgggcttatccaacca	13	7	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100668170	100668170	A	G	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	silent	c.1194	p.G398	0.999	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	381	3	0.78	423	73	14.63	-	-	-	G	100668170	A	G	100668170	2	3	232	1	0	0	0	0	0	0	0	1	7318	291	11	5		5	HNRNPH2	23	100668170	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	181434	100668170	54602390	2893	18419										
ARMCX3	0	genome.wustl.edu	37	chrX	100880200	100880200	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagtatagtatggtacccAccttgggctcggattgggac	13	8	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100880200	100880200	A	C	SNP	ARMCX3	ENST00000341189	human	ensembl	69_37n	1	known	silent	c.231	p.P77	0.999	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX3	HGNC	ENSG00000102401	266	0	0	340	42	10.97	-	-	-	C	100880200	A	C	100880200	2	2	232	1	0	0	0	0	0	0	0	1	965	146	6	5		5	ARMCX3	23	100880200	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	212030	100880200	54390360	2894	18420										
ARMCX2	0	genome.wustl.edu	37	chrX	100912810	100912810	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgcttcgttggcgggctagcAcccagacacaggtgtcaagg	14	11	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	100912810	100912810	A	C	SNP	ARMCX2	ENST00000467416	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ARMCX2	HGNC	ENSG00000184867	25	0	0	15	8	34.78	-	-	-	C	100912810	A	C	100912810	1	2	232	0	1	0	0	0	0	0	0	0	964	174	6	5		5	ARMCX2	23	100912810	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	32610	100912810	54357750	2895	18421										
NXF5	0	genome.wustl.edu	37	chrX	101095499	101095499	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcagactggtccgagaaggTgctgcacaacgggttccctt	14	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101095499	101095499	T	G	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.670	p.T224P	0.095	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	209	0	0	199	29	12.72	-	-	-	G	101095499	T	G	101095499	3	3	232	1	0	0	0	0	1	0	0	0	10859	1696	59	5	455	5	NXF5	23	101095499	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	182689	101095499	54175061	2896	18422										
TCEAL2	0	genome.wustl.edu	37	chrX	101382108	101382108	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agagggggaagggcagagggTgaaggagagccagacagtga	21	4	0	6			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101382108	101382108	T	G	SNP	TCEAL2	ENST00000329035	human	ensembl	69_37n	1	known	silent	c.306	p.G102	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905	283	2	0.7	152	45	22.5	-	-	-	G	101382108	T	G	101382108	2	3	232	1	0	0	0	0	0	0	0	1	15766	1683	59	5		5	TCEAL2	23	101382108	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	286609	101382108	53888452	2897	18423										
TCEAL6	0	genome.wustl.edu	37	chrX	101396082	101396082	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcgccttgtggcttgccctcAccttcggacttgccctgctt	9	16	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101396082	101396082	A	C	SNP	TCEAL6	ENST00000372773	human	ensembl	69_37n	-1	known	silent	c.222	p.G74	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071	254	2	0.77	137	34	19.77	-	-	-	C	101396082	A	C	101396082	2	2	232	1	0	0	0	0	0	0	0	1	15770	146	6	5		5	TCEAL6	23	101396082	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	13974	101396082	53874478	2898	18424										
NXF2	0	genome.wustl.edu	37	chrX	101571969	101571969	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcaaggaagaaagaaaggTgggagttctttccgggataa	13	4	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101571969	101571969	T	G	SNP	NXF2	ENST00000330252	human	ensembl	69_37n	1	known	silent	c.93	p.G31	0.000	NULL	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2	HGNC	ENSG00000185554	62	0	0	50	17	25	-	-	-	G	101571969	T	G	101571969	2	3	232	1	0	0	0	0	0	0	0	1	10856	1683	59	5		5	NXF2	23	101571969	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	175887	101571969	53698591	2899	18425										
ARMCX5	0	genome.wustl.edu	37	chrX	101857234	101857234	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtgacccaggccaaagctggTgatggagcaatgaccaggac	14	10	0	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101857234	101857234	T	G	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	silent	c.165	p.G55	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	343	2	0.57	280	42	13	-	-	-	G	101857234	T	G	101857234	2	3	232	1	0	0	0	0	0	0	0	1	966	1683	59	5		5	ARMCX5	23	101857234	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	285265	101857234	53413326	2900	18426										
ARMCX5	0	genome.wustl.edu	37	chrX	101857287	101857287	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctacagggaggctatggctgTgacaagggaagtgatcaagg	16	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	101857287	101857287	T	G	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	missense	c.218	p.V73G	0.029	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	426	3	0.7	358	43	10.72	-	-	-	G	101857287	T	G	101857287	3	3	232	1	0	0	0	0	1	0	0	0	966	1696	59	5	220	5	ARMCX5	23	101857287	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	53	101857287	53413273	2901	18427										
BHLHB9	0	genome.wustl.edu	37	chrX	102004634	102004634	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttaggatttagatcccaggcAccatctgaggcaagccctcc	9	13	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	102004634	102004634	A	C	SNP	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	silent	c.711	p.A237	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	384	1	0.26	317	37	10.36	-	-	-	C	102004634	A	C	102004634	2	2	232	1	0	0	0	0	0	0	0	1	1425	146	6	5		5	BHLHB9	23	102004634	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	147347	102004634	53265926	2902	18428										
TCEAL3	0	genome.wustl.edu	37	chrX	102864206	102864206	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gccaggaaaagcagggcaggTccgaaggtgagggcaagcca	17	9	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	102864206	102864206	T	G	SNP	TCEAL3	ENST00000243286	human	ensembl	69_37n	1	known	missense	c.214	p.S72A	0.015	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507	335	3	0.88	233	31	11.52	-	-	-	G	102864206	T	G	102864206	3	3	232	1	0	0	0	0	1	0	0	0	15767	1667	58	5	216	5	TCEAL3	23	102864206	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	859572	102864206	52406354	2903	18429										
MORF4L2	0	genome.wustl.edu	37	chrX	102931315	102931315	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggacattggagcatcagggTgagccaagaggatttcagca	15	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	102931315	102931315	T	G	SNP	MORF4L2	ENST00000360458	human	ensembl	69_37n	-1	known	missense	c.641	p.H214P	1.000	pfam_MRG	pfam_MRG,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562	212	0	0	192	23	10.7	-	-	-	G	102931315	T	G	102931315	3	3	232	1	0	0	0	0	1	0	0	0	9779	1696	59	5	229	5	MORF4L2	23	102931315	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	67109	102931315	52339245	2904	18430										
ESX1	0	genome.wustl.edu	37	chrX	103495263	103495263	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtggcacaggcgccatgcgTggcccgggtggcacaggcgc	19	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	103495263	103495263	T	G	SNP	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	silent	c.867	p.P289	0.132	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	47	0	0	29	5	14.71	-	-	-	G	103495263	T	G	103495263	2	3	232	1	0	0	0	0	0	0	0	1	5300	1683	59	5		5	ESX1	23	103495263	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	563948	103495263	51775297	2905	18431										
ESX1	0	genome.wustl.edu	37	chrX	103497468	103497468	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcaagatttactgacctgcActctgtcttcagtcaaattc	5	11	5	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	103497468	103497468	A	C	SNP	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	missense	c.548	p.V183G	0.999	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	294	0	0	194	25	11.31	-	-	-	C	103497468	A	C	103497468	3	2	232	1	0	0	0	0	1	0	0	0	5300	159	6	5	680	5	ESX1	23	103497468	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2205	103497468	51773092	2906	18432										
NRK	0	genome.wustl.edu	37	chrX	105167111	105167111	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acctttcttgtgcacacaggTtccagatggatttaaagtag	9	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	105167111	105167111	T	G	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.2615	p.V872G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	417	1	0.24	294	41	12.17	-	-	-	G	105167111	T	G	105167111	3	3	232	1	0	0	0	0	1	0	0	0	10728	1739	60	5	2682	5	NRK	23	105167111	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1669643	105167111	50103449	2907	18433										
NRK	0	genome.wustl.edu	37	chrX	105167223	105167223	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatgattggttaactccggcAcctgtcattcagccacctga	8	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	105167223	105167223	A	C	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	silent	c.2727	p.A909	0.891	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	275	1	0.36	178	39	17.89	-	-	-	C	105167223	A	C	105167223	2	2	232	1	0	0	0	0	0	0	0	1	10728	146	6	5		5	NRK	23	105167223	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	112	105167223	50103337	2908	18434										
SERPINA7	0	genome.wustl.edu	37	chrX	105279125	105279125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cttctgtagtaagcggttccActtcttcagtgttttagatg	9	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	105279125	105279125	A	C	SNP	SERPINA7	ENST00000327674	human	ensembl	69_37n	-1	known	missense	c.874	p.W292G	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA7	HGNC	ENSG00000123561	451	0	0	335	38	10.13	-	-	-	C	105279125	A	C	105279125	3	2	232	1	0	0	0	0	1	0	0	0	14182	159	6	5	385	5	SERPINA7	23	105279125	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	111902	105279125	49991435	2909	18435										
RNF128	0	genome.wustl.edu	37	chrX	106034297	106034297	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgttacatgttctttaaaggTggatgttgaagatggatcag	12	3	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	106034297	106034297	T	G	SNP	RNF128	ENST00000255499	human	ensembl	69_37n	1	known	missense	c.986	p.V329G	0.997	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	352	2	0.56	230	33	12.55	-	-	-	G	106034297	T	G	106034297	3	3	232	1	0	0	0	0	1	0	0	0	13522	1710	59	5	1418	5	RNF128	23	106034297	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	755172	106034297	49236263	2910	18436										
RIPPLY1	0	genome.wustl.edu	37	chrX	106144713	106144713	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagaagcttacctgacagggTgatggaacttggattcagcc	12	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	106144713	106144713	T	G	SNP	RIPPLY1	ENST00000276173	human	ensembl	69_37n	-1	known	missense	c.287	p.H96P	1.000	NULL	NULL	-	no_errors	RIPPLY1	HGNC	ENSG00000147223	202	1	0.49	120	22	15.49	-	-	-	G	106144713	T	G	106144713	3	3	232	1	0	0	0	0	1	0	0	0	13470	1696	59	5	176	5	RIPPLY1	23	106144713	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	110416	106144713	49125847	2911	18437										
RBM41	0	genome.wustl.edu	37	chrX	106312494	106312494	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaactacttactgggaaaggTgataaaagcctggcccctca	9	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	106312494	106312494	T	G	SNP	RBM41	ENST00000372479	human	ensembl	69_37n	-1	known	missense	c.1066	p.T356P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682	217	1	0.46	248	55	18.09	-	-	-	G	106312494	T	G	106312494	3	3	232	1	0	0	0	0	1	0	0	0	13218	1696	59	5	192	5	RBM41	23	106312494	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	167781	106312494	48958066	2912	18438										
TSC22D3	0	genome.wustl.edu	37	chrX	106957903	106957903	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctagctgggagttcttctccAccagctctcggatctgctcc	9	15	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	106957903	106957903	A	C	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	missense	c.449	p.V150G	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	249	1	0.4	155	20	11.36	-	-	-	C	106957903	A	C	106957903	3	2	232	1	0	0	0	0	1	0	0	0	16705	159	6	5	157	5	TSC22D3	23	106957903	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	645409	106957903	48312657	2913	18439										
TSC22D3	0	genome.wustl.edu	37	chrX	106957972	106957972	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catacatcagatgattcttcAccagatcctgccaatgaggg	8	11	3	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	106957972	106957972	A	C	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	missense	c.380	p.V127G	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	197	0	0	83	19	18.63	-	-	-	C	106957972	A	C	106957972	3	2	232	1	0	0	0	0	1	0	0	0	16705	159	6	5	226	5	TSC22D3	23	106957972	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	69	106957972	48312588	2914	18440										
TEX13B	0	genome.wustl.edu	37	chrX	107224703	107224703	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accgcctccttttcctgctcAcctgctccttctgtccaatc	4	19	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107224703	107224703	A	C	SNP	TEX13B	ENST00000302917	human	ensembl	69_37n	-1	known	silent	c.546	p.G182	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925	272	2	0.73	239	42	14.89	-	-	-	C	107224703	A	C	107224703	2	2	232	1	0	0	0	0	0	0	0	1	15872	146	6	5		5	TEX13B	23	107224703	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	266731	107224703	48045857	2915	18441										
COL4A6	0	genome.wustl.edu	37	chrX	107414092	107414092	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acaccaacttttccatcttcAcctttgtttccagggaagcc	5	14	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107414092	107414092	A	C	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.3336	p.G1112	0.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	147	1	0.68	95	27	22.13	-	-	-	C	107414092	A	C	107414092	2	2	232	1	0	0	0	0	0	0	0	1	3725	146	6	5		5	COL4A6	23	107414092	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	189389	107414092	47856468	2916	18442										
COL4A6	0	genome.wustl.edu	37	chrX	107457345	107457345	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aatatctggcagcatacgggTggtccgagaagcccaggata	13	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107457345	107457345	T	G	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.441	p.P147	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	155	0	0	94	19	16.67	-	-	-	G	107457345	T	G	107457345	2	3	232	1	0	0	0	0	0	0	0	1	3725	1683	59	5		5	COL4A6	23	107457345	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	43253	107457345	47813215	2917	18443										
COL4A5	0	genome.wustl.edu	37	chrX	107829955	107829955	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttcctggaatacagggtccAcctggccttcctggacctcc	9	15	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107829955	107829955	A	C	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	silent	c.1143	p.P381	0.999	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	383	0	0	312	52	14.29	-	-	-	C	107829955	A	C	107829955	2	2	232	1	0	0	0	0	0	0	0	1	3724	146	6	5		5	COL4A5	23	107829955	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	372610	107829955	47440605	2918	18444										
IRS4	0	genome.wustl.edu	37	chrX	107977787	107977787	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccatcggatcctttcccActtcctgagcctttgccccc	5	19	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107977787	107977787	A	C	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.1788	p.S596R	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	214	0	0	133	20	13.07	-	-	-	C	107977787	A	C	107977787	3	2	232	1	0	0	0	0	1	0	0	0	7896	156	6	5	1989	5	IRS4	23	107977787	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	147832	107977787	47292773	2919	18445										
IRS4	0	genome.wustl.edu	37	chrX	107977913	107977913	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaccacctgaaccgtgcccAcctgcggtgccctggccatc	9	20	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107977913	107977913	A	C	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	silent	c.1662	p.G554	0.994	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	166	1	0.6	84	20	19.23	-	-	-	C	107977913	A	C	107977913	2	2	232	1	0	0	0	0	0	0	0	1	7896	146	6	5		5	IRS4	23	107977913	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	126	107977913	47292647	2920	18446										
IRS4	0	genome.wustl.edu	37	chrX	107978066	107978066	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tggccatttgagccctggccAcctcctgagccccggccatt	10	17	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	107978066	107978066	A	C	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	silent	c.1509	p.G503	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	149	1	0.67	50	20	28.57	-	-	-	C	107978066	A	C	107978066	2	2	232	1	0	0	0	0	0	0	0	1	7896	146	6	5		5	IRS4	23	107978066	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	153	107978066	47292494	2921	18447										
RGAG1	0	genome.wustl.edu	37	chrX	109694112	109694112	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aactctggagcattgtccccAcccctaatgccagcctcaga	7	16	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	109694112	109694112	A	C	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	silent	c.267	p.P89	0.215	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	788	5	0.63	486	86	15.01	-	-	-	C	109694112	A	C	109694112	2	2	232	1	0	0	0	0	0	0	0	1	13357	146	6	5		5	RGAG1	23	109694112	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1716046	109694112	45576448	2922	18448										
RGAG1	0	genome.wustl.edu	37	chrX	109694926	109694926	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taccctctggagtgatgcccAcccaaacgatgccagcccca	8	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	109694926	109694926	A	C	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.1081	p.T361P	0.002	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	779	6	0.76	409	84	16.94	-	-	-	C	109694926	A	C	109694926	3	2	232	1	0	0	0	0	1	0	0	0	13357	159	6	5	1083	5	RGAG1	23	109694926	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	814	109694926	45575634	2923	18449										
RGAG1	0	genome.wustl.edu	37	chrX	109695035	109695035	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagagcaacagcctctggggTgatgtctgcaccaccagtaa	12	11	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	109695035	109695035	T	G	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.1190	p.V397G	0.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	791	6	0.75	405	62	13.25	-	-	-	G	109695035	T	G	109695035	3	3	232	1	0	0	0	0	1	0	0	0	13357	1696	59	5	1192	5	RGAG1	23	109695035	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	109	109695035	45575525	2924	18450										
RGAG1	0	genome.wustl.edu	37	chrX	109695160	109695160	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagcctctggagccatgaccAcctcactgatgacagtccca	8	16	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	109695160	109695160	A	C	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.1315	p.T439P	0.001	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	656	4	0.61	324	48	12.8	-	-	-	C	109695160	A	C	109695160	3	2	232	1	0	0	0	0	1	0	0	0	13357	159	6	5	1317	5	RGAG1	23	109695160	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	125	109695160	45575400	2925	18451										
ALG13	0	genome.wustl.edu	37	chrX	110970143	110970143	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagggagaccccctcctcccAcccaggctgcagcacagtat	9	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	110970143	110970143	A	C	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	silent	c.1524	p.P508	0.280	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	436	2	0.46	295	49	14.2	-	-	-	C	110970143	A	C	110970143	2	2	232	1	0	0	0	0	0	0	0	1	515	146	6	5		5	ALG13	23	110970143	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1274983	110970143	44300417	2926	18452										
TRPC5	0	genome.wustl.edu	37	chrX	111078256	111078256	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggtagctcctacaaactcggTgaattcgtgtctggctttca	10	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	111078256	111078256	T	G	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.1789	p.T597P	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	495	0	0	475	64	11.87	-	-	-	G	111078256	T	G	111078256	3	3	232	1	0	0	0	0	1	0	0	0	16678	1696	59	5	1152	5	TRPC5	23	111078256	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	108113	111078256	44192304	2927	18453										
AMOT	0	genome.wustl.edu	37	chrX	112033896	112033896	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccaaatatttctgctcccActttgtcatatcagcttcca	3	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	112033896	112033896	A	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.2041	p.W681G	1.000	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	718	0	0	640	74	10.32	-	-	-	C	112033896	A	C	112033896	3	2	232	1	0	0	0	0	1	0	0	0	582	159	6	5	1233	5	AMOT	23	112033896	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	955640	112033896	43236664	2928	18454										
AMOT	0	genome.wustl.edu	37	chrX	112035178	112035178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggcctgctgcatcttctccAccttgtcaacgtacacttgc	8	15	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	112035178	112035178	A	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1808	p.V603G	1.000	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	265	0	0	269	46	14.6	-	-	-	C	112035178	A	C	112035178	3	2	232	1	0	0	0	0	1	0	0	0	582	159	6	5	1470	5	AMOT	23	112035178	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1282	112035178	43235382	2929	18455										
AMOT	0	genome.wustl.edu	37	chrX	112058602	112058602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaccttctgcagtcttgccAccttctcatagcatccttcc	4	17	4	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	112058602	112058602	A	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1376	p.V459G	1.000	superfamily_Prefoldin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	415	2	0.48	329	56	14.55	-	-	-	C	112058602	A	C	112058602	3	2	232	1	0	0	0	0	1	0	0	0	582	159	6	5	1918	5	AMOT	23	112058602	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	23424	112058602	43211958	2930	18456										
HTR2C	0	genome.wustl.edu	37	chrX	114082647	114082647	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcaacagcgtccatcatgcAcctctgcgctatatcgctgg	8	14	3	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	114082647	114082647	A	C	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	missense	c.431	p.H144P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	286	2	0.69	175	29	14.15	-	-	-	C	114082647	A	C	114082647	3	2	232	1	0	0	0	0	1	0	0	0	7497	159	6	5	441	5	HTR2C	23	114082647	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2024045	114082647	41187913	2931	18457										
KLHL13	0	genome.wustl.edu	37	chrX	117033137	117033137	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	taacatggcagcaattggggTccactggtcaaggataggtg	14	7	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	117033137	117033137	T	G	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.1711	p.T571P	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	407	2	0.49	329	48	12.66	-	-	-	G	117033137	T	G	117033137	3	3	232	1	0	0	0	0	1	0	0	0	8422	1667	58	5	269	5	KLHL13	23	117033137	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	2950490	117033137	38237423	2932	18458										
WDR44	0	genome.wustl.edu	37	chrX	117527137	117527137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctcctccaactaatttcccAcctcctagacccccacctcc	1	23	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	117527137	117527137	A	C	SNP	WDR44	ENST00000371848	human	ensembl	69_37n	1	known	missense	c.427	p.T143P	0.943	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR44	HGNC	ENSG00000131725	527	2	0.38	499	109	17.87	-	-	-	C	117527137	A	C	117527137	3	2	232	1	0	0	0	0	1	0	0	0	17393	146	6	5	743	5	WDR44	23	117527137	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	494000	117527137	37743423	2933	18459										
KIAA1210	0	genome.wustl.edu	37	chrX	118221102	118221102	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggactacttgaaggcaggTgcttctcaccgctgctctgc	11	12	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	118221102	118221102	T	G	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.4091	p.H1364P	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	516	2	0.39	276	46	14.24	-	-	-	G	118221102	T	G	118221102	3	3	232	1	0	0	0	0	1	0	0	0	8266	1696	59	5	1054	5	KIAA1210	23	118221102	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	693965	118221102	37049458	2934	18460										
SLC25A5	0	genome.wustl.edu	37	chrX	118603762	118603762	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgtcatcagatacttccccAcccaggctcttaacttcgcc	5	16	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	118603762	118603762	A	C	SNP	SLC25A5	ENST00000317881	human	ensembl	69_37n	1	known	missense	c.250	p.T84P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022	250	1	0.4	157	18	10.17	-	-	-	C	118603762	A	C	118603762	3	2	232	1	0	0	0	0	1	0	0	0	14601	159	6	5	256	5	SLC25A5	23	118603762	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	382660	118603762	36666798	2935	18461										
RHOXF2	0	genome.wustl.edu	37	chrX	119297567	119297567	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcctgtgtttccccatgccAccctttcctcctccgtcctt	5	19	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	119297567	119297567	A	C	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	1	known	silent	c.741	p.P247	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	20	0	0	13	6	31.58	-	-	-	C	119297567	A	C	119297567	2	2	232	1	0	0	0	0	0	0	0	1	13432	146	6	5		5	RHOXF2	23	119297567	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	693805	119297567	35972993	2936	18462										
C1GALT1C1	0	genome.wustl.edu	37	chrX	119760467	119760467	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tctacacttaagacaattccTccttccatacccacatattc	1	15	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	119760467	119760467	T	C	SNP	C1GALT1C1	ENST00000304661	human	ensembl	69_37n	-1	known	silent	c.555	p.G185	1.000	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155	191	0	0	133	26	16.25	-	-	-	C	119760467	T	C	119760467	2	2	232	1	0	0	0	0	0	0	0	1	1972	1538	54	5		5	C1GALT1C1	23	119760467	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	462900	119760467	35510093	2937	18463										
ODZ1	0	genome.wustl.edu	37	chrX	123695592	123695592	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agcctgtcccactccaacccAcctgacacacacagtgccaa	5	19	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	123695592	123695592	A	C	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.2363	p.V788G	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	294	2	0.68	286	70	19.5	-	-	-	C	123695592	A	C	123695592	3	2	232	1	0	0	0	0	1	0	0	0	10907	159	6	5	5911	5	ODZ1	23	123695592	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3935125	123695592	31574968	2938	18464										
ODZ1	0	genome.wustl.edu	37	chrX	123779165	123779165	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttctcgtattctccattcccAccacacagcacagggcagga	7	15	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	123779165	123779165	A	C	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.1704	p.G568	1.000	smart_EGF-like	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	394	0	0	377	44	10.43	-	-	-	C	123779165	A	C	123779165	2	2	232	1	0	0	0	0	0	0	0	1	10907	146	6	5		5	ODZ1	23	123779165	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	83573	123779165	31491395	2939	18465										
ODZ1	0	genome.wustl.edu	37	chrX	123787528	123787528	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acttcagatatattggatggTggatagtaatctggaaacgc	11	5	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	123787528	123787528	T	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.1274	p.H425P	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	285	0	0	263	62	19.08	-	-	-	G	123787528	T	G	123787528	3	3	232	1	0	0	0	0	1	0	0	0	10907	1696	59	5	7028	5	ODZ1	23	123787528	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	8363	123787528	31483032	2940	18466										
ACTRT1	0	genome.wustl.edu	37	chrX	127185211	127185211	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtgatcttgatgggagtAcctttggaagccagctgttc	13	8	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	127185211	127185211	A	C	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	silent	c.975	p.G325	0.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	435	3	0.68	280	35	11.04	-	-	-	C	127185211	A	C	127185211	2	2	232	1	0	0	0	0	0	0	0	1	218	378	14	5		5	ACTRT1	23	127185211	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3397683	127185211	28085349	2941	18467										
ACTRT1	0	genome.wustl.edu	37	chrX	127185609	127185609	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctagcaaagaggagccgggTgaggtgctctgtgatgtccc	16	9	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	127185609	127185609	T	G	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	missense	c.577	p.T193P	0.864	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	392	1	0.25	255	33	11.46	-	-	-	G	127185609	T	G	127185609	3	3	232	1	0	0	0	0	1	0	0	0	218	1696	59	5	557	5	ACTRT1	23	127185609	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	398	127185609	28084951	2942	18468										
XPNPEP2	0	genome.wustl.edu	37	chrX	128886315	128886315	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatgggatctatgaaatgatAcccaaggtgggtttgccagg	13	6	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	128886315	128886315	A	C	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	silent	c.1011	p.I337	1.000	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	163	0	0	119	26	17.81	-	-	-	C	128886315	A	C	128886315	2	2	232	1	0	0	0	0	0	0	0	1	17540	381	14	5		5	XPNPEP2	23	128886315	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1700706	128886315	26384245	2943	18469										
XPNPEP2	0	genome.wustl.edu	37	chrX	128902310	128902310	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccagaccatccgggagaaggTgggtccagagctgcagaggc	16	11	0	4			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	128902310	128902310	T	G	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	missense	c.1874	p.V625G	0.742	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	55	0	0	68	16	18.82	-	-	-	G	128902310	T	G	128902310	3	3	232	1	0	0	0	0	1	0	0	0	17540	1696	59	5	1956	5	XPNPEP2	23	128902310	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	15995	128902310	26368250	2944	18470										
BCORL1	0	genome.wustl.edu	37	chrX	129147498	129147498	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcggttccagctccttccccTcccttagcacctgtcccggc	7	20	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	129147498	129147498	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	silent	c.750	p.P250	0.964	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	310	2	0.64	309	43	12.18	-	-	-	C	129147498	T	C	129147498	2	2	232	1	0	0	0	0	0	0	0	1	1391	1538	54	5		5	BCORL1	23	129147498	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	245188	129147498	26123062	2945	18471										
ELF4	0	genome.wustl.edu	37	chrX	129203483	129203483	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctggagctggttcgccgggTggtactggcagaggccacag	17	11	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	129203483	129203483	T	G	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.979	p.T327P	0.001	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	133	1	0.74	71	17	19.32	-	-	-	G	129203483	T	G	129203483	3	3	232	1	0	0	0	0	1	0	0	0	5093	1696	59	5	1020	5	ELF4	23	129203483	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	55985	129203483	26067077	2946	18472										
GPR119	0	genome.wustl.edu	37	chrX	129519124	129519124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggcaaggtacctgtcaaaggTgatcagcatgaccgtgagga	14	8	2	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	129519124	129519124	T	G	SNP	GPR119	ENST00000276218	human	ensembl	69_37n	-1	known	missense	c.298	p.T100P	0.992	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR119	HGNC	ENSG00000147262	200	0	0	229	28	10.85	-	-	-	G	129519124	T	G	129519124	3	3	232	1	0	0	0	0	1	0	0	0	6684	1696	59	5	713	5	GPR119	23	129519124	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	315641	129519124	25751436	2947	18473										
ARHGAP36	0	genome.wustl.edu	37	chrX	130219633	130219633	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgccaccctgccacagtgatAccctggagcgtctgctgaag	11	14	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	130219633	130219633	A	C	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1027	p.T343P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	777	4	0.51	602	77	11.29	-	-	-	C	130219633	A	C	130219633	3	2	232	1	0	0	0	0	1	0	0	0	885	391	14	5	1053	5	ARHGAP36	23	130219633	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	700509	130219633	25050927	2948	18474										
ARHGAP36	0	genome.wustl.edu	37	chrX	130220304	130220304	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctaattctaccctcaggTgcctccccatattcagaggc	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	130220304	130220304	T	G	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1283	p.V428G	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	284	0	0	185	29	13.49	-	-	-	G	130220304	T	G	130220304	3	3	232	1	0	0	0	0	1	0	0	0	885	1710	59	5	1317	5	ARHGAP36	23	130220304	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	671	130220304	25050256	2949	18475										
IGSF1	0	genome.wustl.edu	37	chrX	130409514	130409514	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tagaactggtccagtcagggTggtagcagcagctgtaacgc	14	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	130409514	130409514	T	G	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3137	p.H1046P	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	310	1	0.32	246	40	13.99	-	-	-	G	130409514	T	G	130409514	3	3	232	1	0	0	0	0	1	0	0	0	7650	1696	59	5	908	5	IGSF1	23	130409514	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	189210	130409514	24861046	2950	18476										
IGSF1	0	genome.wustl.edu	37	chrX	130411005	130411005	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tccctccatcaccaatgcccAccgaaatgattagaaagtga	6	13	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	130411005	130411005	A	C	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2531	p.V844G	0.633	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	509	5	0.97	495	58	10.43	-	-	-	C	130411005	A	C	130411005	3	2	232	1	0	0	0	0	1	0	0	0	7650	159	6	5	1522	5	IGSF1	23	130411005	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1491	130411005	24859555	2951	18477										
USP26	0	genome.wustl.edu	37	chrX	132161352	132161352	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atataacaggtgtttcccaaAttggggaggccgtggcatat	12	7	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	132161352	132161352	A	T	SNP	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	missense	c.897	p.N299K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	196	1	0.51	149	37	19.89	-	-	-	T	132161352	A	T	132161352	3	4	232	1	0	0	0	0	1	0	0	0	17154	98	4	5	1847	5	USP26	23	132161352	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1750347	132161352	23109208	2952	18478										
FAM122C	0	genome.wustl.edu	37	chrX	133941483	133941483	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggctgctagggctgcaaaggTgggcacccctactcgcctaa	13	13	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	133941483	133941483	T	G	SNP	FAM122C	ENST00000470657	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	FAM122C	HGNC	ENSG00000156500	77	0	0	115	30	20.41	-	-	-	G	133941483	T	G	133941483	1	3	232	0	1	0	0	0	0	0	0	0	5461	1711	59	5		5	FAM122C	23	133941483	RNA	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	1780131	133941483	21329077	2953	18479										
ZNF75D	0	genome.wustl.edu	37	chrX	134421118	134421118	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcttctgtggagtttctggTgtctaagaaggctcgatcgc	12	8	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	134421118	134421118	T	G	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	missense	c.1484	p.H495P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	212	0	0	176	21	10.66	-	-	-	G	134421118	T	G	134421118	3	3	232	1	0	0	0	0	1	0	0	0	18228	1696	59	5	52	5	ZNF75D	23	134421118	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	479635	134421118	20849442	2954	18480										
SAGE1	0	genome.wustl.edu	37	chrX	134978440	134978440	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaacgagtcaaccaactccAcctgaagaacttcatgctgc	6	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	134978440	134978440	A	C	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	silent	c.39	p.P13	0.000	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	179	1	0.56	130	23	15.03	-	-	-	C	134978440	A	C	134978440	2	2	232	1	0	0	0	0	0	0	0	1	13895	146	6	5		5	SAGE1	23	134978440	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	557322	134978440	20292120	2955	18481										
SLC9A6	0	genome.wustl.edu	37	chrX	135098870	135098870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	acatggggctgacactgttcAccttccagaaccatgtcttt	8	12	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135098870	135098870	A	C	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	missense	c.1303	p.T435P	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	152	0	0	147	30	16.95	-	-	-	C	135098870	A	C	135098870	3	2	232	1	0	0	0	0	1	0	0	0	14807	159	6	5	1341	5	SLC9A6	23	135098870	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	120430	135098870	20171690	2956	18482										
GPR112	0	genome.wustl.edu	37	chrX	135427230	135427230	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tttacagtggaaaagacttcAcctgcatctactcatgttgg	8	9	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135427230	135427230	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.1365	p.S455	0.020	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	710	2	0.28	581	82	12.37	-	-	-	C	135427230	A	C	135427230	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135427230	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	328360	135427230	19843330	2957	18483			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135427269	135427269	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gggactgcatcatcattcccAcctgagcctgtgctcatctc	8	15	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135427269	135427269	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.1404	p.P468	0.002	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	705	3	0.42	557	111	16.52	-	-	-	C	135427269	A	C	135427269	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135427269	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	39	135427269	19843291	2958	18484			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135428005	135428005	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	catctccagagggcaaaggtAccactgccaatgatgctact							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135428005	135428005	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.2140	p.T714P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	676	4	0.59	553	80	12.64	-	-	-	C	135428005	A	C	135428005	3	2	232	1	0	0	0	0	1	0	0	0	6679	391	14	5	2150	5	GPR112	23	135428005	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	736	135428005	19842555	2959	18485	201	2	15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135428008	135428008	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctccagagggcaaaggtaccActgccaatgatgctactaca							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135428008	135428008	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.2143	p.T715P	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	701	3	0.43	565	75	11.72	-	-	-	C	135428008	A	C	135428008	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	2153	5	GPR112	23	135428008	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3	135428008	19842552	2960	18486	201	2	15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135428064	135428064	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctgtatccaaattgacatcAccatggtttgctaatttctc	6	10	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135428064	135428064	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.2199	p.S733	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	661	0	0	511	67	11.53	-	-	-	C	135428064	A	C	135428064	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135428064	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	56	135428064	19842496	2961	18487			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135428447	135428447	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tatagcagcagtggctgaggTttctccattttcaacaatgc	9	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135428447	135428447	T	G	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.2582	p.V861G	0.078	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	1228	4	0.32	978	126	11.4	-	-	-	G	135428447	T	G	135428447	3	3	232	1	0	0	0	0	1	0	0	0	6679	1725	60	5	2592	5	GPR112	23	135428447	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	383	135428447	19842113	2962	18488			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135429060	135429060	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	atgaccacagcattggtaccAcctttggatcagactgcttc	8	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135429060	135429060	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.3195	p.P1065	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	1196	6	0.5	935	199	17.49	-	-	-	C	135429060	A	C	135429060	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135429060	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	613	135429060	19841500	2963	18489			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135429244	135429244	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tgacagctaaggctgagaccAcccttttctctacctcagtt	7	13	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135429244	135429244	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3379	p.T1127P	0.021	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	994	4	0.4	805	106	11.6	-	-	-	C	135429244	A	C	135429244	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	3389	5	GPR112	23	135429244	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	184	135429244	19841316	2964	18490			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135429256	135429256	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctgagaccacccttttctctAcctcagttgatacagtaacc	5	14	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135429256	135429256	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3391	p.T1131P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	993	5	0.5	811	92	10.15	-	-	-	C	135429256	A	C	135429256	3	2	232	1	0	0	0	0	1	0	0	0	6679	391	14	5	3401	5	GPR112	23	135429256	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	12	135429256	19841304	2965	18491			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135429616	135429616	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccatccagttggtgactagcAcctctgtcttatcttccgac	7	14	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135429616	135429616	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3751	p.T1251P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	671	1	0.15	543	73	11.83	-	-	-	C	135429616	A	C	135429616	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	3761	5	GPR112	23	135429616	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	360	135429616	19840944	2966	18492			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135430584	135430584	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gttaataactctgctttcacAcctgcaacagtctcttctga	5	12	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135430584	135430584	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.4719	p.T1573	0.008	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	515	0	0	343	72	17.35	-	-	-	C	135430584	A	C	135430584	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135430584	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	968	135430584	19839976	2967	18493			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135430846	135430846	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cctttgtaaaaaccgttcccAccaccattatggctgggata	7	12	0	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135430846	135430846	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.4981	p.T1661P	0.008	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	661	1	0.15	442	70	13.65	-	-	-	C	135430846	A	C	135430846	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	4991	5	GPR112	23	135430846	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	262	135430846	19839714	2968	18494			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135430956	135430956	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attccaaagaccacattttcAccatttctatcagcaactca	2	13	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135430956	135430956	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.5091	p.S1697	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	601	1	0.17	413	47	10.17	-	-	-	C	135430956	A	C	135430956	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135430956	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	110	135430956	19839604	2969	18495			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135431311	135431311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	actatgccacatctttgaatAcccctgtttcataccctcca	3	15	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135431311	135431311	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.5446	p.T1816P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	503	2	0.4	322	73	18.48	-	-	-	C	135431311	A	C	135431311	3	2	232	1	0	0	0	0	1	0	0	0	6679	391	14	5	5456	5	GPR112	23	135431311	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	355	135431311	19839249	2970	18496			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135431382	135431382	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgacatcatttgtttattcAcctcatagtactgaagctga	6	8	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135431382	135431382	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.5517	p.S1839	0.019	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	456	0	0	299	44	12.83	-	-	-	C	135431382	A	C	135431382	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135431382	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	71	135431382	19839178	2971	18497			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135431603	135431603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gatggaaacagagactctacAccttgttcctgggcctttgt	10	10	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135431603	135431603	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.5738	p.H1913P	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	430	3	0.69	265	54	16.93	-	-	-	C	135431603	A	C	135431603	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	5748	5	GPR112	23	135431603	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	221	135431603	19838957	2972	18498			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135431877	135431877	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ggatctgtaatttcaaagtcAcccattctgacatggctctt	7	10	5	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135431877	135431877	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.6012	p.S2004	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	334	0	0	226	43	15.99	-	-	-	C	135431877	A	C	135431877	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135431877	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	274	135431877	19838683	2973	18499			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135432070	135432070	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctactatgagcaccatactcAcccgaaccattcctacacct	3	17	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135432070	135432070	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.6205	p.T2069P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	351	2	0.56	194	45	18.75	-	-	-	C	135432070	A	C	135432070	3	2	232	1	0	0	0	0	1	0	0	0	6679	159	6	5	6215	5	GPR112	23	135432070	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	193	135432070	19838490	2974	18500			15	45		19	18	5032	N	T_A	7.119563e-21
GPR112	0	genome.wustl.edu	37	chrX	135432261	135432261	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttcagcagaaagactatgtcAccttctacaactgaccacac	5	13	3	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135432261	135432261	A	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.6396	p.S2132	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	266	1	0.37	159	21	11.48	-	-	-	C	135432261	A	C	135432261	2	2	232	1	0	0	0	0	0	0	0	1	6679	146	6	5		5	GPR112	23	135432261	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	191	135432261	19838299	2975	18501			15	45		19	18	5032	N	T_A	7.119563e-21
VGLL1	0	genome.wustl.edu	37	chrX	135630994	135630994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcatcccttccccgctcggcAcctggttccagagccccagc	8	20	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	135630994	135630994	A	C	SNP	VGLL1	ENST00000370634	human	ensembl	69_37n	1	known	missense	c.461	p.H154P	0.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL1	HGNC	ENSG00000102243	227	2	0.87	233	45	16.07	-	-	-	C	135630994	A	C	135630994	3	2	232	1	0	0	0	0	1	0	0	0	17255	159	6	5	467	5	VGLL1	23	135630994	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	198733	135630994	19639566	2976	18502										
MAGEC1	0	genome.wustl.edu	37	chrX	140995925	140995925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttatacactggatgaaaaggTggacgagttggcgcggtttc	14	6	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	140995925	140995925	T	G	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.2735	p.V912G	0.002	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	350	0	0	216	34	13.44	-	-	-	G	140995925	T	G	140995925	3	3	232	1	0	0	0	0	1	0	0	0	9251	1696	59	5	2741	5	MAGEC1	23	140995925	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	5364931	140995925	14274635	2977	18503										
MAGEC2	0	genome.wustl.edu	37	chrX	141291001	141291001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agtgctccctcccagcatatAcccctactgcattcagcact	5	17	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	141291001	141291001	A	C	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.773	p.V258G	0.018	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	538	1	0.19	483	68	12.32	-	-	-	C	141291001	A	C	141291001	3	2	232	1	0	0	0	0	1	0	0	0	9252	391	14	5	352	5	MAGEC2	23	141291001	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	295076	141291001	13979559	2978	18504										
SLITRK2	0	genome.wustl.edu	37	chrX	144904958	144904958	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaagtctcctgtgcctctcAcctgtcccagcagctgtgtc	8	17	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	144904958	144904958	A	C	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.1015	p.T339P	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	119	0	0	66	16	19.28	-	-	-	C	144904958	A	C	144904958	3	2	232	1	0	0	0	0	1	0	0	0	14832	159	6	5	1017	5	SLITRK2	23	144904958	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	3613957	144904958	10365602	2979	18505										
AFF2	0	genome.wustl.edu	37	chrX	147743620	147743620	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caaaagaacagaataattccAcctcaccaggataataccca	4	12	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	147743620	147743620	A	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.372	p.P124	0.824	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	879	1	0.11	642	74	10.29	-	-	-	C	147743620	A	C	147743620	2	2	232	1	0	0	0	0	0	0	0	1	357	146	6	5		5	AFF2	23	147743620	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	2838662	147743620	7526940	2980	18506										
AFF2	0	genome.wustl.edu	37	chrX	147744061	147744061	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ctttcagttcaaaacttcccAccagggctttactgcaaaac	5	13	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	147744061	147744061	A	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.813	p.P271	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	398	1	0.25	333	38	10.16	-	-	-	C	147744061	A	C	147744061	2	2	232	1	0	0	0	0	0	0	0	1	357	146	6	5		5	AFF2	23	147744061	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	441	147744061	7526499	2981	18507										
AFF2	0	genome.wustl.edu	37	chrX	148039953	148039953	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttgctccctccttgcatctcAccagccccaccccacaagcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	148039953	148039953	A	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.2655	p.S885	0.998	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	332	0	0	240	58	19.33	-	-	-	C	148039953	A	C	148039953	2	2	232	1	0	0	0	0	0	0	0	1	357	146	6	5		5	AFF2	23	148039953	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	295892	148039953	7230607	2982	18508	202	2								
AFF2	0	genome.wustl.edu	37	chrX	148039962	148039962	+	Silent	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccttgcatctcaccagccccAccccacaagcctcccaacac							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	148039962	148039962	A	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.2664	p.P888	0.972	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	335	1	0.3	238	61	20.33	-	-	-	C	148039962	A	C	148039962	2	2	232	1	0	0	0	0	0	0	0	1	357	146	6	5		5	AFF2	23	148039962	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	9	148039962	7230598	2983	18509	202	2								
CD99L2	0	genome.wustl.edu	37	chrX	149984484	149984484	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaggcagccacattacctggAggttttgccggagctctggt	13	10	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	149984484	149984484	A	G	SNP	CD99L2	ENST00000370377	human	ensembl	69_37n	-1	known	silent	c.198	p.P66	0.145	NULL	pfam_CD99L2	-	no_errors	CD99L2	HGNC	ENSG00000102181	143	0	0	166	23	12.17	-	-	-	G	149984484	A	G	149984484	2	3	232	1	0	0	0	0	0	0	0	1	3080	291	11	5		5	CD99L2	23	149984484	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	1944522	149984484	5286076	2984	18510										
GPR50	0	genome.wustl.edu	37	chrX	150349821	150349821	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	caccatcgctgaccttcctgAccctactgtagtcactacca	5	17	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	150349821	150349821	A	C	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	1	known	missense	c.1766	p.D589A	0.012	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	226	1	0.44	184	29	13.55	-	-	-	C	150349821	A	C	150349821	3	2	232	1	0	0	0	0	1	0	0	0	6747	275	10	5	1772	5	GPR50	23	150349821	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	365337	150349821	4920739	2985	18511										
PASD1	0	genome.wustl.edu	37	chrX	150839661	150839661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	attggaattgatgatggatcAccttcaggtcagtcaggatg	12	6	4	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	150839661	150839661	A	C	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	missense	c.1223	p.H408P	0.032	NULL	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	236	2	0.84	179	26	12.62	-	-	-	C	150839661	A	C	150839661	3	2	232	1	0	0	0	0	1	0	0	0	11544	159	6	5	1265	5	PASD1	23	150839661	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	489840	150839661	4430899	2986	18512										
PRRG3	0	genome.wustl.edu	37	chrX	150868638	150868638	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aagagaaaacggcatgtaccAccctggggctggttctggga	14	9	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	150868638	150868638	A	C	SNP	PRRG3	ENST00000370354	human	ensembl	69_37n	1	known	missense	c.202	p.T68P	0.000	pfscan_GLA_domain	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	47	0	0	41	10	19.23	-	-	-	C	150868638	A	C	150868638	3	2	232	1	0	0	0	0	1	0	0	0	12687	174	6	5		5	PRRG3	23	150868638	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	28977	150868638	4401922	2987	18513										
MAGEA4	0	genome.wustl.edu	37	chrX	151092213	151092213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	agaagaggccctgggcctggTgggtgcacaggctcctacta	15	11	0	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151092213	151092213	T	G	SNP	MAGEA4	ENST00000276344	human	ensembl	69_37n	1	known	missense	c.77	p.V26G	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	32	0	0	48	10	16.95	-	-	-	G	151092213	T	G	151092213	3	3	232	1	0	0	0	0	1	0	0	0	9237	1696	59	5	79	5	MAGEA4	23	151092213	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	223575	151092213	4178347	2988	18514										
GABRE	0	genome.wustl.edu	37	chrX	151124004	151124004	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaattcttacgagaaaaggTgcccaacgtggtcatggtca	11	8	3	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151124004	151124004	T	G	SNP	GABRE	ENST00000370328	human	ensembl	69_37n	-1	known	missense	c.973	p.T325P	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287	198	1	0.5	223	30	11.81	-	-	-	G	151124004	T	G	151124004	3	3	232	1	0	0	0	0	1	0	0	0	6219	1696	59	5	555	5	GABRE	23	151124004	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	31791	151124004	4146556	2989	18515										
MAGEA10	0	genome.wustl.edu	37	chrX	151303738	151303738	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtctggcaggacctgtagggTgcttggactctcctcctttt	12	11	2	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151303738	151303738	T	G	SNP	MAGEA10	ENST00000244096	human	ensembl	69_37n	-1	known	missense	c.355	p.T119P	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260	159	1	0.62	85	19	18.1	-	-	-	G	151303738	T	G	151303738	3	3	232	1	0	0	0	0	1	0	0	0	9231	1696	59	5	758	5	MAGEA10	23	151303738	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	179734	151303738	3966822	2990	18516										
GABRQ	0	genome.wustl.edu	37	chrX	151808886	151808886	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	tcaaaagattttggacagggTgctgtcaagatacgatgtcc	11	7	2	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151808886	151808886	T	G	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	missense	c.197	p.V66G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	201	1	0.5	111	14	11.2	-	-	-	G	151808886	T	G	151808886	3	3	232	1	0	0	0	0	1	0	0	0	6224	1696	59	5	203	5	GABRQ	23	151808886	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	505148	151808886	3461674	2991	18517										
MAGEA12	0	genome.wustl.edu	37	chrX	151899895	151899895	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaagcccattcatgcaggggTgggtaggaaatgtgaggtcc	15	7	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151899895	151899895	T	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.906	p.P302	0.005	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	310	3	0.95	270	37	11.9	-	-	-	G	151899895	T	G	151899895	2	3	232	1	0	0	0	0	0	0	0	1	9233	1683	59	5		5	MAGEA12	23	151899895	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	91009	151899895	3370665	2992	18518										
MAGEA12	0	genome.wustl.edu	37	chrX	151899938	151899938	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cactgatctttagcaaatggTgcaggactttcacatagctg	9	9	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151899938	151899938	T	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.863	p.H288P	0.001	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	348	1	0.29	295	34	10.3	-	-	-	G	151899938	T	G	151899938	3	3	232	1	0	0	0	0	1	0	0	0	9233	1696	59	5	85	5	MAGEA12	23	151899938	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	43	151899938	3370622	2993	18519										
MAGEA12	0	genome.wustl.edu	37	chrX	151900304	151900304	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cgatgcggaccacttccaccAcctcgatgccaaagaccagc	8	17	0	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151900304	151900304	A	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.497	p.V166G	0.324	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	294	0	0	253	39	13.31	-	-	-	C	151900304	A	C	151900304	3	2	232	1	0	0	0	0	1	0	0	0	9233	159	6	5	451	5	MAGEA12	23	151900304	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	366	151900304	3370256	2994	18520										
MAGEA3	0	genome.wustl.edu	37	chrX	151935261	151935261	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aaaacccactcatgcaggggTgggtaggaaatgtgaggtcc	14	8	1	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	151935261	151935261	T	G	SNP	MAGEA3	ENST00000370278	human	ensembl	69_37n	-1	known	silent	c.906	p.P302	0.000	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867	215	1	0.46	170	38	18.18	-	-	-	G	151935261	T	G	151935261	2	3	232	1	0	0	0	0	0	0	0	1	9236	1683	59	5		5	MAGEA3	23	151935261	Silent	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	34957	151935261	3335299	2995	18521										
PNMA3	0	genome.wustl.edu	37	chrX	152225996	152225997	+	Frame_Shift_Ins	INS	-	-	G													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gagatgctacagatgtggcaINSggtgcccgagggggaaaaga							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	152225996	152225997	-	G	INS	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	frame_shift_ins	c.584_585	p.V196fs	0.534:0.465	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	46	0	0	49	7	12.5	-	-	-	G	152225997	-	G	152225996	7	5	232	1	0	1	1	0	0	0	0	0	12229	188	7	0	586	0	PNMA3	23	152225996	Frame_Shift_Ins	INS	-	TCGA-A8-A0A6-01A-12W-A071-09	290735	152225996	3044564	2996	18522										
ZNF275	0	genome.wustl.edu	37	chrX	152612811	152612811	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gtcgttcaaagtcaacacccAcctcttccgacatcagaaac	5	15	4	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	152612811	152612811	A	C	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	1	known	missense	c.758	p.H253P	0.240	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	300	0	0	186	42	18.42	-	-	-	C	152612811	A	C	152612811	3	2	232	1	0	0	0	0	1	0	0	0	17906	159	6	5	678	5	ZNF275	23	152612811	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	386815	152612811	2657749	2997	18523										
OPN1LW	0	genome.wustl.edu	37	chrX	153421833	153421833	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gaaggaagtgacgcgcatggTggtggtgatgatctttgcgt	17	5	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	153421833	153421833	T	G	SNP	OPN1LW	ENST00000369951	human	ensembl	69_37n	1	known	missense	c.809	p.V270G	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076	612	1	0.16	507	92	15.31	-	-	-	G	153421833	T	G	153421833	3	3	232	1	0	0	0	0	1	0	0	0	10950	1696	59	5	827	5	OPN1LW	23	153421833	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	809022	153421833	1848727	2998	18524										
FLNA	0	genome.wustl.edu	37	chrX	153592705	153592705	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	gctggcttgttgacggccacAcctgtcttctccaatccagg	10	14	2	1			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	153592705	153592705	A	C	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.2058	p.G686	0.714	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	29	0	0	24	7	22.58	-	-	-	C	153592705	A	C	153592705	2	2	232	1	0	0	0	0	0	0	0	1	5979	146	6	5		5	FLNA	23	153592705	Silent	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	170872	153592705	1677855	2999	18525										
TAZ	0	genome.wustl.edu	37	chrX	153648473	153648473	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	cagagagatggcatctggggTggggggcctgggactccctc	18	10	1	2			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	153648473	153648473	T	G	SNP	TAZ	ENST00000369776	human	ensembl	69_37n	1	putative	missense	c.479	p.V160G	0.109	NULL	pfam_Acyltransferase,prints_Tafazzin	-	no_errors	TAZ	HGNC	ENSG00000102125	135	1	0.73	184	35	15.98	-	-	-	G	153648473	T	G	153648473	3	3	232	1	0	0	0	0	1	0	0	0	15688	1711	59	5		5	TAZ	23	153648473	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	55768	153648473	1622087	3000	18526										
VBP1	0	genome.wustl.edu	37	chrX	154467174	154467174	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ccaaacatgttatcttaaatAcccctttatccttacaggtt	3	11	1	0			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	154467174	154467174	A	C	SNP	VBP1	ENST00000459836	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VBP1	HGNC	ENSG00000155959	248	0	0	220	36	14.06	-	-	-	C	154467174	A	C	154467174	1	2	232	0	1	0	0	0	0	0	0	0	17233	406	14	5		5	VBP1	23	154467174	RNA	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	818701	154467174	803386	3001	18527										
RAB39B	0	genome.wustl.edu	37	chrX	154490157	154490157	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	accacatttggtacaaatccActcttcaccccttcccagcc							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	154490157	154490157	A	C	SNP	RAB39B	ENST00000369454	human	ensembl	69_37n	-1	known	missense	c.573	p.S191R	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961	413	1	0.24	312	45	12.57	-	-	-	C	154490157	A	C	154490157	3	2	232	1	0	0	0	0	1	0	0	0	13013	156	6	5	72	5	RAB39B	23	154490157	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	22983	154490157	780403	3002	18528	203	2								
RAB39B	0	genome.wustl.edu	37	chrX	154490164	154490164	+	Missense_Mutation	SNP	A	A	C													0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	ttggtacaaatccactcttcAccccttcccagccctcctgg							TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	154490164	154490164	A	C	SNP	RAB39B	ENST00000369454	human	ensembl	69_37n	-1	known	missense	c.566	p.V189G	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961	419	3	0.71	287	78	21.31	-	-	-	C	154490164	A	C	154490164	3	2	232	1	0	0	0	0	1	0	0	0	13013	159	6	5	79	5	RAB39B	23	154490164	Missense_Mutation	SNP	A	TCGA-A8-A0A6-01A-12W-A071-09	7	154490164	780396	3003	18529	203	2								
SPRY3	0	genome.wustl.edu	37	chrX	155003547	155003547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0016857720836143	5	0.26631241730593	2.05040193951767	0	2.15831783107123	0.00793650793650794	0.114145658263305	0	aggcaaaatggatgctgcggTgacagatgattttcaacaaa	11	6	1	3			TCGA-A8-A0A6-01A-12W-A071-09	TCGA-A8-A0A6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	799fe8eb-ef90-40d9-850b-aea8c529a4da	53ce4246-678f-45a1-be5b-7f6863bbd049	X	155003547	155003547	T	G	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	missense	c.14	p.V5G	0.256	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	409	4	0.97	390	61	13.5	-	-	-	G	155003547	T	G	155003547	3	3	232	1	0	0	0	0	1	0	0	0	15198	1696	59	5	16	5	SPRY3	23	155003547	Missense_Mutation	SNP	T	TCGA-A8-A0A6-01A-12W-A071-09	513383	155003547	267013	3004	18530										
CAMTA1	0	genome.wustl.edu	37	chr1	7725242	7725242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tggtgaccgactactccccaGagtggtcttacccagaggta	11	12	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	7725242	7725242	G	C	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.2635	p.E879Q	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	10	0	0	7	4	36.36	-	-	-	C	7725242	G	C	7725242	3	2	233	1	0	0	0	0	1	0	0	0	2638	943	33	2	2669	2	CAMTA1	1	7725242	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		7725242	241525379	1	18531										
HSPG2	0	genome.wustl.edu	37	chr1	22211641	22211642	+	Frame_Shift_Ins	INS	-	-	G													0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ccggggaggtgtcaccacctINSgggggggcactgaggagacc							TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	22211641	22211642	-	G	INS	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1220_1219	p.Q407fs	1.000:0.999	pfam_Ig_I-set,superfamily_LDrepeatLR_classA_rpt,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	9	0	0	8	2	20	-	-	-	G	22211642	-	G	22211641	7	5	233	1	0	1	1	0	0	0	0	0	7484	1580	55	0	12303	0	HSPG2	1	22211641	Frame_Shift_Ins	INS	-	TCGA-A8-A0A7-01A-11W-A019-09	14486399	22211641	227038980	2	18532										
CELA3A	0	genome.wustl.edu	37	chr1	22332186	22332186	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	cctaccaggtggtgttgggtGagtacaaccttgctgtgaag	14	8	0	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	22332186	22332186	G	A	SNP	CELA3A	ENST00000290122	human	ensembl	69_37n	1	known	missense	c.259	p.E87K	0.993	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3A	HGNC	ENSG00000142789	77	0	0	96	17	15.04	-	-	-	A	22332186	G	A	22332186	3	1	233	1	0	0	0	0	1	0	0	0	3242	1291	45	2	273	2	CELA3A	1	22332186	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	120545	22332186	226918435	3	18533										
DLGAP3	0	genome.wustl.edu	37	chr1	35370730	35370731	+	Frame_Shift_Ins	INS	-	-	C													0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tcctggggaaggtgctgctaINSccccccccaaccccggcccc							TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	35370730	35370731	-	C	INS	DLGAP3	ENST00000235180	human	ensembl	69_37n	-1	known	frame_shift_ins	c.255_254	p.S86fs	0.928:1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	20	0	0	12	3	20	-	-	-	C	35370731	-	C	35370730	7	5	233	1	0	1	1	0	0	0	0	0	4597	378	14	0	2724	0	DLGAP3	1	35370730	Frame_Shift_Ins	INS	-	TCGA-A8-A0A7-01A-11W-A019-09	13038544	35370730	213879891	4	18534										
MCOLN3	0	genome.wustl.edu	37	chr1	85486834	85486834	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aagaggctgatgaatgagtaGaggtaaattctactaaacag	11	4	1	5			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	85486834	85486834	G	C	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	silent	c.1446	p.L482	1.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	126	0	0	154	22	12.5	-	-	-	C	85486834	G	C	85486834	2	2	233	1	0	0	0	0	0	0	0	1	9468	929	33	2		2	MCOLN3	1	85486834	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	50116104	85486834	163763787	5	18535										
MTF2	0	genome.wustl.edu	37	chr1	93594862	93594862	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tctgggaaagaaataaagaaGaagaagcatttgtttgggtt	12	2	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	93594862	93594862	G	A	SNP	MTF2	ENST00000370298	human	ensembl	69_37n	1	known	silent	c.1017	p.K339	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	295	0	0	284	34	10.69	-	-	-	A	93594862	G	A	93594862	2	1	233	1	0	0	0	0	0	0	0	1	9995	933	33	2		2	MTF2	1	93594862	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	8108028	93594862	155655759	6	18536										
PAPPA2	0	genome.wustl.edu	37	chr1	176671822	176671822	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgggagaagcttcgcctcctCtgaaccacattcatggagct	10	12	2	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	176671822	176671822	C	G	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.3316	p.L1106V	0.997	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	295	0	0	246	30	10.83	-	-	-	G	176671822	C	G	176671822	3	3	233	1	0	0	0	0	1	0	0	0	11506	912	32	2	3399	2	PAPPA2	1	176671822	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	83076960	176671822	72578799	7	18537										
TOR1AIP1	0	genome.wustl.edu	37	chr1	179851766	179851767	+	Frame_Shift_Ins	INS	-	-	A													0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcggcagcagcgatgcgcctINSgcgtacagaactcctccgtc							TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	179851766	179851767	-	A	INS	TOR1AIP1	ENST00000435319	human	ensembl	69_37n	1	known	frame_shift_ins	c.129_130	p.A43fs	0.979:0.995	NULL	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	15	0	0	23	12	34.29	-	-	-	A	179851767	-	A	179851766	7	5	233	1	0	1	1	0	0	0	0	0	16468	1567	55	0	131	0	TOR1AIP1	1	179851766	Frame_Shift_Ins	INS	-	TCGA-A8-A0A7-01A-11W-A019-09	3179944	179851766	69398855	8	18538										
RGS21	0	genome.wustl.edu	37	chr1	192335120	192335120	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aaccaacactcaaatgctttGatgaggctcagaaattaatc	6	9	2	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	192335120	192335120	G	A	SNP	RGS21	ENST00000417209	human	ensembl	69_37n	1	known	missense	c.325	p.D109N	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS21	HGNC	ENSG00000253148	459	0	0	346	58	14.36	-	-	-	A	192335120	G	A	192335120	3	1	233	1	0	0	0	0	1	0	0	0	13388	1290	45	2	339	2	RGS21	1	192335120	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	12483354	192335120	56915501	9	18539										
ASPM	0	genome.wustl.edu	37	chr1	197069570	197069570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tatagaaatacctgaattttTatggtgctatttttaatttc	5	4	0	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	1	197069570	197069570	T	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.8811	p.I2937M	0.997	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	115	0	0	77	13	14.44	-	-	-	C	197069570	T	C	197069570	3	2	233	1	0	0	0	0	1	0	0	0	1060	1744	61	5	1666	5	ASPM	1	197069570	Missense_Mutation	SNP	T	TCGA-A8-A0A7-01A-11W-A019-09	4734450	197069570	52181051	10	18540										
SLC8A1	0	genome.wustl.edu	37	chr2	40402401	40402401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcaagaaatgaaatgcttacCaagctcattcaataacaggg	8	8	2	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	40402401	40402401	C	T	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1936	p.G646S	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	253	0	0	166	21	11.23	-	-	-	T	40402401	C	T	40402401	3	4	233	1	0	0	0	0	1	0	0	0	14795	608	21	4	1017	4	SLC8A1	2	40402401	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		40402401	202796972	11	18541										
ABCG5	0	genome.wustl.edu	37	chr2	44040269	44040269	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ctttcactacctgctaatgaGatgatcccttattttgaaaa	5	9	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	44040269	44040269	G	C	SNP	ABCG5	ENST00000260645	human	ensembl	69_37n	-1	known	missense	c.1942	p.L648V	0.013	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG5	HGNC	ENSG00000138075	71	0	0	54	7	11.48	-	-	-	C	44040269	G	C	44040269	3	2	233	1	0	0	0	0	1	0	0	0	71	942	33	2	17	2	ABCG5	2	44040269	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	3637868	44040269	199159104	12	18542										
ADD2	0	genome.wustl.edu	37	chr2	70905998	70905998	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcaccgtcctcctcaaacacGaaggctgtgaccgtggctgg	12	14	1	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	70905998	70905998	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	silent	c.1221	p.F407	0.918	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	320	0	0	272	33	10.82	-	-	-	A	70905998	G	A	70905998	2	1	233	1	0	0	0	0	0	0	0	1	305	1049	37	1		1	ADD2	2	70905998	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	26865729	70905998	172293375	13	18543										
TMEM87B	0	genome.wustl.edu	37	chr2	112873704	112873704	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ggctgaaaaaatgttctcttCagaaaagataatgtgattgg	10	4	2	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	112873704	112873704	C	T	SNP	TMEM87B	ENST00000283206	human	ensembl	69_37n	1	known	missense	c.1652	p.S551L	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214	61	0	0	38	7	15.56	-	-	-	T	112873704	C	T	112873704	3	4	233	1	0	0	0	0	1	0	0	0	16306	838	29	2	1726	2	TMEM87B	2	112873704	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	41967706	112873704	130325669	14	18544										
MGAT5	0	genome.wustl.edu	37	chr2	135012084	135012084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcactttaccatccagcagcGaactcagcctgaaagcagct	8	14	1	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	135012084	135012084	G	A	SNP	MGAT5	ENST00000281923	human	ensembl	69_37n	1	known	missense	c.110	p.R37Q	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	133	0	0	149	22	12.87	-	-	-	A	135012084	G	A	135012084	3	1	233	1	0	0	0	0	1	0	0	0	9619	1058	37	1	112	1	MGAT5	2	135012084	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	22138380	135012084	108187289	15	18545										
CIR1	0	genome.wustl.edu	37	chr2	175213464	175213464	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gctgctcccctcctttctttCagagcctctcttctctgggc	7	17	4	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	2	175213464	175213464	C	T	SNP	CIR1	ENST00000342016	human	ensembl	69_37n	-1	known	missense	c.1114	p.E372K	0.999	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433	228	0	0	238	29	10.82	-	-	-	T	175213464	C	T	175213464	3	4	233	1	0	0	0	0	1	0	0	0	3461	835	29	2	242	2	CIR1	2	175213464	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	40201380	175213464	67985909	16	18546										
ITPR1	0	genome.wustl.edu	37	chr3	4726864	4726864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcgcgcacgccgtggtgctgGagctgctgcagattccctat	14	13	0	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	4726864	4726864	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.3631	p.E1211K	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	62	0	0	45	5	10	-	-	-	A	4726864	G	A	4726864	3	1	233	1	0	0	0	0	1	0	0	0	7974	1175	41	2	3786	2	ITPR1	3	4726864	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		4726864	193295566	17	18547										
ROBO1	0	genome.wustl.edu	37	chr3	78666819	78666819	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atttgccgtcgtgctactttCagaccagcatactctgccgc	8	14	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	78666819	78666819	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	silent	c.4248	p.L1416	0.971	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	232	0	0	162	29	15.18	-	-	-	G	78666819	C	G	78666819	2	3	233	1	0	0	0	0	0	0	0	1	13599	813	29	2		2	ROBO1	3	78666819	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	73939955	78666819	119355611	18	18548										
TMPRSS7	0	genome.wustl.edu	37	chr3	111768781	111768781	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tctcctcatatacggaggctCtcaggaatccgggcatattt	9	11	3	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	111768781	111768781	C	G	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	silent	c.672	p.L224	0.004	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	248	0	0	161	33	17.01	-	-	-	G	111768781	C	G	111768781	2	3	233	1	0	0	0	0	0	0	0	1	16347	900	32	2		2	TMPRSS7	3	111768781	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	33101962	111768781	86253649	19	18549										
SNX4	0	genome.wustl.edu	37	chr3	125216188	125216188	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	catataaatattcttaccttCagctgaaacccagtttcatt	3	10	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	125216188	125216188	C	T	SNP	SNX4	ENST00000251775	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	0.918	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX4	HGNC	ENSG00000114520	83	0	0	112	15	11.81	-	-	-	T	125216188	C	T	125216188	2	4	233	1	0	0	0	0	0	0	0	1	14993	813	29	2		2	SNX4	3	125216188	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	13447407	125216188	72806242	20	18550										
TMEM108	0	genome.wustl.edu	37	chr3	133098943	133098943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	caaccacatcctccaagccaGagggccgccctcgagggcag	11	17	0	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	133098943	133098943	G	C	SNP	TMEM108	ENST00000321871	human	ensembl	69_37n	1	known	missense	c.388	p.E130Q	0.046	NULL	NULL	-	no_errors	TMEM108	HGNC	ENSG00000144868	140	0	0	70	14	16.67	-	-	-	C	133098943	G	C	133098943	3	2	233	1	0	0	0	0	1	0	0	0	16119	943	33	2	394	2	TMEM108	3	133098943	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	7882755	133098943	64923487	21	18551										
PIK3CB	0	genome.wustl.edu	37	chr3	138474685	138474685	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgagaactggaagaaaaggtCtgacatcacagagtcttcgt	11	7	3	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	138474685	138474685	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.308	p.R103K	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	373	0	0	518	66	11.26	-	-	-	T	138474685	C	T	138474685	3	4	233	1	0	0	0	0	1	0	0	0	11988	913	32	2	2986	2	PIK3CB	3	138474685	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	5375742	138474685	59547745	22	18552										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	128	0	0	110	17	13.39	-	-	-	A	178938934	G	A	178938934	3	1	233	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	40464249	178938934	19083496	23	18553										
MCF2L2	0	genome.wustl.edu	37	chr3	182937693	182937693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ctatctccatatcttcaggaGactcgaaatccagcagaccc	6	14	3	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	3	182937693	182937693	G	C	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.2321	p.S774C	0.989	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	383	0	0	253	38	13.01	-	-	-	C	182937693	G	C	182937693	3	2	233	1	0	0	0	0	1	0	0	0	9451	942	33	2	1063	2	MCF2L2	3	182937693	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	3998759	182937693	15084737	24	18554										
BMP2K	0	genome.wustl.edu	37	chr4	79782550	79782550	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tttttcttccaagaattcttCtattccttcagctcttcctg	3	12	5	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	4	79782550	79782550	C	G	SNP	BMP2K	ENST00000335016	human	ensembl	69_37n	1	known	missense	c.995	p.S332C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	141	0	0	125	16	11.35	-	-	-	G	79782550	C	G	79782550	3	3	233	1	0	0	0	0	1	0	0	0	1465	913	32	2	1029	2	BMP2K	4	79782550	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		79782550	111371726	25	18555										
BMP3	0	genome.wustl.edu	37	chr4	81967616	81967616	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gggcctcatcggaagagccaGacgctccaatttgatgagca	12	11	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	4	81967616	81967616	G	A	SNP	BMP3	ENST00000282701	human	ensembl	69_37n	1	known	silent	c.1041	p.Q347	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785	298	1	0.33	276	33	10.68	-	-	-	A	81967616	G	A	81967616	2	1	233	1	0	0	0	0	0	0	0	1	1466	933	33	2		2	BMP3	4	81967616	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	2185066	81967616	109186660	26	18556										
FAM153B	0	genome.wustl.edu	37	chr5	175517376	175517376	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tttttctctaaatgcaggtgGacaaagacacagagagagac	10	7	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	5	175517376	175517376	G	C	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	missense	c.238	p.D80H	0.005	prints_FAM153	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	159	0	0	171	27	13.64	-	-	-	C	175517376	G	C	175517376	3	2	233	1	0	0	0	0	1	0	0	0	5501	1174	41	2	252	2	FAM153B	5	175517376	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		175517376	5397884	27	18557										
SKIV2L	0	genome.wustl.edu	37	chr6	31931758	31931758	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	cagttgcccgtggtggtgttCaccttctcccggggccgctg	14	14	2	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	6	31931758	31931758	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	silent	c.1716	p.F572	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	93	0	0	77	14	15.38	-	-	-	T	31931758	C	T	31931758	2	4	233	1	0	0	0	0	0	0	0	1	14448	825	29	2		2	SKIV2L	6	31931758	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		31931758	139183309	28	18558										
PGK2	0	genome.wustl.edu	37	chr6	49753829	49753829	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ggaagtggctttcacaatttCatccatgagggctttggttc	11	8	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	6	49753829	49753829	C	A	SNP	PGK2	ENST00000304801	human	ensembl	69_37n	-1	known	nonsense	c.1072	p.E358*	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950	714	0	0	668	92	12.09	-	-	-	A	49753829	C	A	49753829	4	1	233	1	0	0	0	0	0	1	0	0	11865	835	29	2	185	2	PGK2	6	49753829	Nonsense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	17822071	49753829	121361238	29	18559										
STK31	0	genome.wustl.edu	37	chr7	23827616	23827616	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	taggaaactttaaaggtcatGaaaggtgttgcccagggtct	12	6	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	7	23827616	23827616	G	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.2505	p.M835I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	300	0	0	259	32	11	-	-	-	T	23827616	G	T	23827616	3	4	233	1	0	0	0	0	1	0	0	0	15387	1290	45	2	2587	2	STK31	7	23827616	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		23827616	135311047	30	18560										
COL1A2	0	genome.wustl.edu	37	chr7	94047827	94047827	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tcagggtgaacctggtctcaGaggtgaaattggtaaccctg	13	8	2	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	7	94047827	94047827	G	C	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.1988	p.R663T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	248	1	0.4	230	28	10.85	-	-	-	C	94047827	G	C	94047827	3	2	233	1	0	0	0	0	1	0	0	0	3708	942	33	2	2118	2	COL1A2	7	94047827	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	70220211	94047827	65090836	31	18561										
CTTNBP2	0	genome.wustl.edu	37	chr7	117432081	117432081	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tactggttggatctggtgttGagccagtgcttggtccattt	13	7	1	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	7	117432081	117432081	G	C	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	nonsense	c.1169	p.S390*	0.017	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	464	0	0	393	56	12.47	-	-	-	C	117432081	G	C	117432081	4	2	233	1	0	0	0	0	0	1	0	0	4077	1294	45	2	3902	2	CTTNBP2	7	117432081	Nonsense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	23384254	117432081	41706582	32	18562										
ZNF800	0	genome.wustl.edu	37	chr7	127013543	127013543	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atttattgcatctgtgaagaGaaaagttttttgtgactttt	8	3	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	7	127013543	127013543	G	A	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	missense	c.1847	p.S616F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	310	0	0	196	25	11.31	-	-	-	A	127013543	G	A	127013543	3	1	233	1	0	0	0	0	1	0	0	0	18262	942	33	2	155	2	ZNF800	7	127013543	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	9581462	127013543	32125120	33	18563										
CSPP1	0	genome.wustl.edu	37	chr8	67976671	67976671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ggtggccgctgtaacctcttCggtccgcgacgatcctctag	12	14	2	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	8	67976671	67976671	C	T	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.38	p.S13L	0.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	18	0	0	34	9	20.93	-	-	-	T	67976671	C	T	67976671	3	4	233	1	0	0	0	0	1	0	0	0	3994	893	31	1	40	1	CSPP1	8	67976671	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		67976671	78387351	34	18564										
FBXO43	0	genome.wustl.edu	37	chr8	101153488	101153488	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgagttaaaaccactgtcttCaggcgttgaaatactgcctc	8	10	2	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	8	101153488	101153488	C	T	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	missense	c.994	p.E332K	1.000	NULL	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	211	0	0	171	63	26.92	-	-	-	T	101153488	C	T	101153488	3	4	233	1	0	0	0	0	1	0	0	0	5798	835	29	2	1148	2	FBXO43	8	101153488	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	33176817	101153488	45210534	35	18565										
PABPC1	0	genome.wustl.edu	37	chr8	101719153	101719153	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgactcgtggaacctgtgaaGaagctggtctcatagtacta	11	8	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	8	101719153	101719153	G	A	SNP	PABPC1	ENST00000318607	human	ensembl	69_37n	-1	known	missense	c.1409	p.S470F	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756	174	0	0	154	48	23.76	-	-	-	A	101719153	G	A	101719153	3	1	233	1	0	0	0	0	1	0	0	0	11436	942	33	2	521	2	PABPC1	8	101719153	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	565665	101719153	44644869	36	18566										
TET1	0	genome.wustl.edu	37	chr10	70333675	70333675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gagaggactcttccatgcttCactgggtatagcccaactct	9	12	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	10	70333675	70333675	C	T	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.1580	p.S527L	0.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	124	0	0	151	21	12.14	-	-	-	T	70333675	C	T	70333675	3	4	233	1	0	0	0	0	1	0	0	0	15864	838	29	2	1582	2	TET1	10	70333675	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		70333675	65201072	37	18567										
TET1	0	genome.wustl.edu	37	chr10	70451292	70451292	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	cgtaatcatccaacccgcctCtcccttgtcttttaccagca	4	17	3	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	10	70451292	70451292	C	G	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.6132	p.L2044	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	223	0	0	212	30	12.35	-	-	-	G	70451292	C	G	70451292	2	3	233	1	0	0	0	0	0	0	0	1	15864	900	32	2		2	TET1	10	70451292	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	117617	70451292	65083455	38	18568										
SEC23IP	0	genome.wustl.edu	37	chr10	121658202	121658202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ccatttcgaaggctcaacctGgtgctccaccttcctcactg	7	16	2	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	10	121658202	121658202	G	A	SNP	SEC23IP	ENST00000369075	human	ensembl	69_37n	1	known	missense	c.427	p.G143S	0.284	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651	685	2	0.29	768	109	12.41	-	-	-	A	121658202	G	A	121658202	3	1	233	1	0	0	0	0	1	0	0	0	14081	1348	47	4	433	4	SEC23IP	10	121658202	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	51206910	121658202	13876545	39	18569										
ANO3	0	genome.wustl.edu	37	chr11	26569062	26569062	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gttggtttgtgcgttttcttCtatggattatttacaatgaa	9	4	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	26569062	26569062	C	T	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	silent	c.1254	p.F418	0.996	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	822	0	0	646	89	12.09	-	-	-	T	26569062	C	T	26569062	2	4	233	1	0	0	0	0	0	0	0	1	697	912	32	2		2	ANO3	11	26569062	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		26569062	108437454	40	18570										
AMBRA1	0	genome.wustl.edu	37	chr11	46564007	46564007	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gtctggggagcttccccactCaggctctgatccagctcctg	11	15	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	46564007	46564007	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	silent	c.1560	p.L520	0.936	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	94	0	0	103	17	14.17	-	-	-	T	46564007	C	T	46564007	2	4	233	1	0	0	0	0	0	0	0	1	565	813	29	2		2	AMBRA1	11	46564007	Silent	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	19994945	46564007	88442509	41	18571										
LPXN	0	genome.wustl.edu	37	chr11	58338121	58338121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atgctgatccaggggaagagGagctgggttggaatattcat	15	5	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	58338121	58338121	G	A	SNP	LPXN	ENST00000528954	human	ensembl	69_37n	-1	known	missense	c.94	p.P32S	0.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	208	0	0	170	22	11.46	-	-	-	A	58338121	G	A	58338121	3	1	233	1	0	0	0	0	1	0	0	0	8995	1174	41	2	1113	2	LPXN	11	58338121	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	11774114	58338121	76668395	42	18572										
INCENP	0	genome.wustl.edu	37	chr11	61908274	61908274	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	caggagcaagaccccttcctCaccctgcccagccagcaagg	9	18	1	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	61908274	61908274	C	T	SNP	INCENP	ENST00000394818	human	ensembl	69_37n	1	known	missense	c.1442	p.S481L	0.968	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	17	0	0	13	6	31.58	-	-	-	T	61908274	C	T	61908274	3	4	233	1	0	0	0	0	1	0	0	0	7787	838	29	2	1472	2	INCENP	11	61908274	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	3570153	61908274	73098242	43	18573										
SUV420H1	0	genome.wustl.edu	37	chr11	67939066	67939066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gagcacagtttttccttgtgGagtacatgacactgaagtcg	11	8	0	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	67939066	67939066	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.764	p.S255F	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	116	0	0	140	18	11.32	-	-	-	A	67939066	G	A	67939066	3	1	233	1	0	0	0	0	1	0	0	0	15505	1174	41	2	1921	2	SUV420H1	11	67939066	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	6030792	67939066	67067450	44	18574										
CARD18	0	genome.wustl.edu	37	chr11	105009659	105009659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aatcaagactcgagccttatCcatgacagtgtcattttcat	6	10	3	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	105009659	105009659	C	T	SNP	CARD18	ENST00000530950	human	ensembl	69_37n	-1	known	missense	c.154	p.D52N	0.018	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD18	HGNC	ENSG00000255501	1191	0	0	1143	137	10.68	-	-	-	T	105009659	C	T	105009659	3	4	233	1	0	0	0	0	1	0	0	0	2674	855	30	2	122	2	CARD18	11	105009659	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	37070593	105009659	29996857	45	18575										
GUCY1A2	0	genome.wustl.edu	37	chr11	106810633	106810633	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ttctttcctgcagccttaatCatccccagcattgcaaaccc	4	16	2	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	106810633	106810633	C	T	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	missense	c.759	p.M253I	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	475	0	0	375	45	10.64	-	-	-	T	106810633	C	T	106810633	3	4	233	1	0	0	0	0	1	0	0	0	6944	826	29	2	1459	2	GUCY1A2	11	106810633	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	1800974	106810633	28195883	46	18576										
NCAM1	0	genome.wustl.edu	37	chr11	113076824	113076824	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ggggcatcaagaaaacagatGagggcacttatcgctgtgag	14	7	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	113076824	113076824	G	A	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	653	0	0	432	52	10.74	-	-	-	A	113076824	G	A	113076824	3	1	233	1	0	0	0	0	1	0	0	0	10274	1291	45	2	569	2	NCAM1	11	113076824	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	6266191	113076824	21929692	47	18577										
BACE1	0	genome.wustl.edu	37	chr11	117161249	117161249	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aattcgttttcgggcccgatCaaagacaacgtagaagccct	9	11	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	117161249	117161249	C	T	SNP	BACE1	ENST00000313005	human	ensembl	69_37n	-1	known	missense	c.1219	p.D407N	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Peptidase_A1	-	no_errors	BACE1	HGNC	ENSG00000186318	159	0	0	178	23	11.44	-	-	-	T	117161249	C	T	117161249	3	4	233	1	0	0	0	0	1	0	0	0	1285	826	29	2	294	2	BACE1	11	117161249	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	4084425	117161249	17845267	48	18578										
OR8D4	0	genome.wustl.edu	37	chr11	123777208	123777208	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	taactgaacaagcagagcttCagctgcccctcttctgcctc	7	15	3	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	11	123777208	123777208	C	T	SNP	OR8D4	ENST00000321355	human	ensembl	69_37n	1	known	nonsense	c.70	p.Q24*	0.992	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518	538	1	0.19	399	45	10.14	-	-	-	T	123777208	C	T	123777208	4	4	233	1	0	0	0	0	0	1	0	0	11306	827	29	2	72	2	OR8D4	11	123777208	Nonsense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	6615959	123777208	11229308	49	18579										
WNK1	0	genome.wustl.edu	37	chr12	994442	994442	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgtgggagccacattaacatCagtttctaccaccacttcat	6	12	3	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	994442	994442	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.5966	p.S1989L	0.254	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	472	0	0	396	67	14.44	-	-	-	T	994442	C	T	994442	3	4	233	1	0	0	0	0	1	0	0	0	17474	838	29	2	6048	2	WNK1	12	994442	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		994442	132857453	50	18580										
TAPBPL	0	genome.wustl.edu	37	chr12	6567931	6567931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gacccgagaggagctgggtgGatccccagcccaagtctctg	14	13	1	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	6567931	6567931	G	A	SNP	TAPBPL	ENST00000266556	human	ensembl	69_37n	1	known	missense	c.1025	p.G342E	0.216	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	TAPBPL	HGNC	ENSG00000139192	67	0	0	62	9	12.68	-	-	-	A	6567931	G	A	6567931	3	1	233	1	0	0	0	0	1	0	0	0	15645	1174	41	2	1043	2	TAPBPL	12	6567931	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	5573489	6567931	127283964	51	18581										
CMAS	0	genome.wustl.edu	37	chr12	22214234	22214234	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gatatggctattttggcaaaGagaagcttaaggaaataaaa	10	3	0	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	22214234	22214234	G	A	SNP	CMAS	ENST00000229329	human	ensembl	69_37n	1	known	missense	c.808	p.E270K	1.000	pfam_Cytidylyl_trans	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726	200	0	0	152	19	11.05	-	-	-	A	22214234	G	A	22214234	3	1	233	1	0	0	0	0	1	0	0	0	3605	943	33	2	830	2	CMAS	12	22214234	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	15646303	22214234	111637661	52	18582										
BCAT1	0	genome.wustl.edu	37	chr12	25054773	25054773	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aagtccccaccacctcttttGatcctccttctccggtacac	4	18	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	25054773	25054773	G	A	SNP	BCAT1	ENST00000261192	human	ensembl	69_37n	-1	known	missense	c.53	p.S18L	0.000	NULL	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982	90	0	0	45	7	13.46	-	-	-	A	25054773	G	A	25054773	3	1	233	1	0	0	0	0	1	0	0	0	1358	1294	45	2	1147	2	BCAT1	12	25054773	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	2840539	25054773	108797122	53	18583										
KRT5	0	genome.wustl.edu	37	chr12	52910585	52910585	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	agcttgttcctggcatccttGagggccagctccccacgctg	11	15	0	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	52910585	52910585	G	A	SNP	KRT5	ENST00000548409	human	ensembl	69_37n	-1	putative	nonsense	c.397	p.Q133*	1.000	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KRT5	HGNC	ENSG00000186081	251	0	0	169	24	12.44	-	-	-	A	52910585	G	A	52910585	4	1	233	1	0	0	0	0	0	1	0	0	8532	1277	45	2	509	2	KRT5	12	52910585	Nonsense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	27855812	52910585	80941310	54	18584										
ESYT1	0	genome.wustl.edu	37	chr12	56522465	56522465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gctcactgcgaaaactctctAtatgagtcatcgagagctac	8	11	3	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	56522465	56522465	A	G	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	missense	c.362	p.Y121C	0.560	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	60	0	0	51	95	65.07	-	-	-	G	56522465	A	G	56522465	3	3	233	1	0	0	0	0	1	0	0	0	5301	449	16	5	364	5	ESYT1	12	56522465	Missense_Mutation	SNP	A	TCGA-A8-A0A7-01A-11W-A019-09	3611880	56522465	77329430	55	18585										
LRRIQ1	0	genome.wustl.edu	37	chr12	85518188	85518188	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tattagtatgtcagaagagaGaagacagcaaggcaagcagt	12	5	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	85518188	85518188	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.3898	p.E1300K	0.065	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	734	1	0.14	315	56	15.01	-	-	-	A	85518188	G	A	85518188	3	1	233	1	0	0	0	0	1	0	0	0	9095	943	33	2	3960	2	LRRIQ1	12	85518188	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	28995723	85518188	48333707	56	18586										
SLC5A8	0	genome.wustl.edu	37	chr12	101555848	101555848	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	agaataccagttatccatcaGtggagtcctaagagagcaaa	9	8	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	12	101555848	101555848	G	A	SNP	SLC5A8	ENST00000536262	human	ensembl	69_37n	-1	known	silent	c.1534	p.L512	0.211	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870	510	0	0	437	68	13.47	-	-	-	A	101555848	G	A	101555848	2	1	233	1	0	0	0	0	0	0	0	1	14760	1020	36	4		4	SLC5A8	12	101555848	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	16037660	101555848	32296047	57	18587										
NBEA	0	genome.wustl.edu	37	chr13	36202288	36202288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tatatttggctataagcagcGaggaccagaagcagttcgtg	12	7	0	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	13	36202288	36202288	G	A	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.7520	p.R2507Q	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	98	0	0	82	13	13.54	-	-	-	A	36202288	G	A	36202288	3	1	233	1	0	0	0	0	1	0	0	0	10259	1058	37	1	7714	1	NBEA	13	36202288	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		36202288	78967590	58	18588										
SERPINE3	0	genome.wustl.edu	37	chr13	51915321	51915321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gaatgacattgctgaagactGagtttgcacttcacctctac	8	10	2	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	13	51915321	51915321	G	A	SNP	SERPINE3	ENST00000521255	human	ensembl	69_37n	1	known	missense	c.94	p.E32K	0.177	pfam_Sepin_dom,superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309	304	0	0	273	31	10.2	-	-	-	A	51915321	G	A	51915321	3	1	233	1	0	0	0	0	1	0	0	0	14201	1291	45	2	96	2	SERPINE3	13	51915321	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	15713033	51915321	63254557	59	18589										
SYNE2	0	genome.wustl.edu	37	chr14	64669610	64669610	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ggttggctcgaattgagtctGagctttccaagcctgttgtt	12	8	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	14	64669610	64669610	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.18130	p.E6044Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	214	0	0	213	30	12.35	-	-	-	C	64669610	G	C	64669610	3	2	233	1	0	0	0	0	1	0	0	0	15538	1291	45	2	18524	2	SYNE2	14	64669610	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		64669610	42679930	60	18590										
MTHFS	0	genome.wustl.edu	37	chr15	80181521	80181521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gaagtaaagaaatttcctctGgtgattctattctcaccata	6	8	3	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	15	80181521	80181521	G	C	SNP	MTHFS	ENST00000258874	human	ensembl	69_37n	-1	known	missense	c.293	p.P98R	0.003	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	-	no_errors	MTHFS	HGNC	ENSG00000136371	347	0	0	380	59	13.44	-	-	-	C	80181521	G	C	80181521	3	2	233	1	0	0	0	0	1	0	0	0	10004	1348	47	4	326	4	MTHFS	15	80181521	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		80181521	22349871	61	18591										
BLM	0	genome.wustl.edu	37	chr15	91293183	91293183	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aggaacagaaggatgactcaGaatggttaagcagcgatgtg	14	5	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	15	91293183	91293183	G	A	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.685	p.E229K	0.002	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	235	0	0	177	26	12.81	-	-	-	A	91293183	G	A	91293183	3	1	233	1	0	0	0	0	1	0	0	0	1450	943	33	2	691	2	BLM	15	91293183	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	11111662	91293183	11238209	62	18592										
GP2	0	genome.wustl.edu	37	chr16	20331055	20331055	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atgaaatcattgaccaaggaGagggtgtttttgtagatggc	13	4	1	4			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	16	20331055	20331055	G	C	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	silent	c.903	p.L301	0.474	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	451	1	0.22	460	60	11.52	-	-	-	C	20331055	G	C	20331055	2	2	233	1	0	0	0	0	0	0	0	1	6632	929	33	2		2	GP2	16	20331055	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		20331055	70023698	63	18593										
CDH1	0	genome.wustl.edu	37	chr16	68844139	68844139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	catccaacgggaatgcagttGaggatccaatggagattttg	12	7	0	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	16	68844139	68844139	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.727	p.E243K	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	257	0	0	321	55	14.63	-	-	-	A	68844139	G	A	68844139	3	1	233	1	0	0	0	0	1	0	0	0	3124	1291	45	2	749	2	CDH1	16	68844139	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	48513084	68844139	21510614	64	18594										
PLCG2	0	genome.wustl.edu	37	chr16	81969832	81969832	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	acgaaggctgacagcatcatCagacagaagcccgtcgacct	10	13	2	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	16	81969832	81969832	C	G	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.2901	p.I967M	0.998	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pirsf_PLC-gamma,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	86	0	0	52	14	21.21	-	-	-	G	81969832	C	G	81969832	3	3	233	1	0	0	0	0	1	0	0	0	12110	816	29	2	3003	2	PLCG2	16	81969832	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	13125693	81969832	8384921	65	18595										
ANKFY1	0	genome.wustl.edu	37	chr17	4109717	4109717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tggcaatactctccagtcgtCgtgagagggctagatctaat	11	9	2	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	17	4109717	4109717	C	T	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.923	p.R308Q	0.972	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	167	0	0	187	30	13.82	-	-	-	T	4109717	C	T	4109717	3	4	233	1	0	0	0	0	1	0	0	0	626	884	31	1	2883	1	ANKFY1	17	4109717	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		4109717	77085493	66	18596										
RPL26	0	genome.wustl.edu	37	chr17	8285480	8285480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	cctgaacttcatcatcctttCggatgggcatggatcgcacg	10	12	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	17	8285480	8285480	C	T	SNP	RPL26	ENST00000293842	human	ensembl	69_37n	-1	known	missense	c.149	p.R50Q	1.000	superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	-	no_errors	RPL26	HGNC	ENSG00000161970	129	0	0	90	14	13.46	-	-	-	T	8285480	C	T	8285480	3	4	233	1	0	0	0	0	1	0	0	0	13659	884	31	1	300	1	RPL26	17	8285480	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	4175763	8285480	72909730	67	18597										
TMEM99	0	genome.wustl.edu	37	chr17	38991475	38991475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcaaagcctcatattactctCtagtctggttcagcaggaca	8	11	4	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	17	38991475	38991475	C	T	SNP	TMEM99	ENST00000301665	human	ensembl	69_37n	1	known	missense	c.707	p.S236F	0.002	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920	358	0	0	374	47	11.11	-	-	-	T	38991475	C	T	38991475	3	4	233	1	0	0	0	0	1	0	0	0	16321	913	32	2	709	2	TMEM99	17	38991475	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	30705995	38991475	42203735	68	18598										
CCDC11	0	genome.wustl.edu	37	chr18	47787564	47787564	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	ttctttcttcaattgcatttCtgtaaaatactcattttctt	2	8	6	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	18	47787564	47787564	C	A	SNP	CCDC11	ENST00000398545	human	ensembl	69_37n	-1	known	nonsense	c.343	p.E115*	0.990	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361	251	0	0	187	26	12.15	-	-	-	A	47787564	C	A	47787564	4	1	233	1	0	0	0	0	0	1	0	0	2771	922	32	2	1225	2	CCDC11	18	47787564	Nonsense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		47787564	30289684	69	18599										
TCF4	0	genome.wustl.edu	37	chr18	52896160	52896160	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gtctggggcttgtcactcttGaggtggagctgcaccatgcg	15	10	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	18	52896160	52896160	G	A	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	silent	c.2103	p.L701	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	122	0	0	122	16	11.59	-	-	-	A	52896160	G	A	52896160	2	1	233	1	0	0	0	0	0	0	0	1	15790	1277	45	2		2	TCF4	18	52896160	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	5108596	52896160	25181088	70	18600										
PDE4A	0	genome.wustl.edu	37	chr19	10572600	10572600	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atgaccctcctggctgacctGaagaccatggtggagaccaa	11	12	0	5			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	10572600	10572600	G	A	SNP	PDE4A	ENST00000352831	human	ensembl	69_37n	1	known	silent	c.1668	p.L556	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989	160	0	0	148	20	11.9	-	-	-	A	10572600	G	A	10572600	2	1	233	1	0	0	0	0	0	0	0	1	11712	1277	45	2		2	PDE4A	19	10572600	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		10572600	48556383	71	18601										
PIK3R2	0	genome.wustl.edu	37	chr19	18274193	18274193	+	Frame_Shift_Del	DEL	T	T	-													0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atgaagagtacacacggaccTcccaggtactccaggccccg							TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	18274193	18274193	T	-	DEL	PIK3R2	ENST00000222254	human	ensembl	69_37n	1	known	frame_shift_del	c.1411	p.S471fs	1.000	NULL	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647	29	0	0	12	6	33.33	-	-	-	-	18274193	T	-	18274193	7	5	233	1	0	1	0	1	0	0	0	0	11993	1551	54	0	1449	0	PIK3R2	19	18274193	Frame_Shift_Del	DEL	T	TCGA-A8-A0A7-01A-11W-A019-09	7701593	18274193	40854790	72	18602										
RYR1	0	genome.wustl.edu	37	chr19	38966090	38966090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	atcatcctcaacaccaccacGgtgtggaccagtaaccctca	6	16	3	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	38966090	38966090	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.4293	p.T1431	1.000	pfam_SPRY_rcpt,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	108	0	0	90	10	10	-	-	-	A	38966090	G	A	38966090	2	1	233	1	0	0	0	0	0	0	0	1	13854	1130	39	1		1	RYR1	19	38966090	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	20691897	38966090	20162893	73	18603										
ZNF574	0	genome.wustl.edu	37	chr19	42585168	42585168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aagtgtgtggcaaggcctttGccatctccatgcgcctggca	12	12	1	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	42585168	42585168	G	A	SNP	ZNF574	ENST00000222339	human	ensembl	69_37n	1	known	missense	c.2680	p.A894T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732	202	0	0	94	16	14.41	-	-	-	A	42585168	G	A	42585168	3	1	233	1	0	0	0	0	1	0	0	0	18102	1319	46	4	2412	4	ZNF574	19	42585168	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	3619078	42585168	16543815	74	18604										
SYMPK	0	genome.wustl.edu	37	chr19	46341874	46341874	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gtcctcccccaggttgggctCtgggatgagggaaaagaaca	14	10	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	46341874	46341874	C	G	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	splice_site	c.1088-1	e9-1	1.000	-	-	-	no_errors	SYMPK	HGNC	ENSG00000125755	68	0	0	59	15	20.27	-	-	-	G	46341874	C	G	46341874	5	3	233	1	0	0	0	0	0	0	1	0	15531	927	32	2	2809	2	SYMPK	19	46341874	Splice_Site	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	3756706	46341874	12787109	75	18605										
ZNF350	0	genome.wustl.edu	37	chr19	52471868	52471868	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tggattccatcttcaattgtCcacagttgttctccttgttc	6	11	3	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	52471868	52471868	C	G	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	missense	c.201	p.W67C	0.301	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	364	0	0	396	100	20.12	-	-	-	G	52471868	C	G	52471868	3	3	233	1	0	0	0	0	1	0	0	0	17959	856	30	2	1405	2	ZNF350	19	52471868	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	6129994	52471868	6657115	76	18606										
ZNF160	0	genome.wustl.edu	37	chr19	53573310	53573310	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgatctcttttaccttctttCtgggccataagcactccctt	5	13	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	19	53573310	53573310	C	G	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.477	p.Q159H	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	298	0	0	374	84	18.3	-	-	-	G	53573310	C	G	53573310	3	3	233	1	0	0	0	0	1	0	0	0	17835	912	32	2	1983	2	ZNF160	19	53573310	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	1101442	53573310	5555673	77	18607										
ITCH	0	genome.wustl.edu	37	chr20	33026307	33026307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	caaatggatcagatgaccctGaagatgcaggagctggtgaa	13	7	1	5			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	20	33026307	33026307	G	A	SNP	ITCH	ENST00000262650	human	ensembl	69_37n	1	known	missense	c.673	p.E225K	0.994	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	ITCH	HGNC	ENSG00000078747	488	0	0	468	112	19.28	-	-	-	A	33026307	G	A	33026307	3	1	233	1	0	0	0	0	1	0	0	0	7922	1291	45	2	572	2	ITCH	20	33026307	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		33026307	29999213	78	18608										
TGIF2	0	genome.wustl.edu	37	chr20	35207199	35207199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tgtcggacagtgatctaggtGaggacgaaggcctcctctcc	13	11	2	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	20	35207199	35207199	G	A	SNP	TGIF2	ENST00000373872	human	ensembl	69_37n	1	known	missense	c.22	p.E8K	0.981	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TGIF2	HGNC	ENSG00000118707	86	0	0	105	21	16.67	-	-	-	A	35207199	G	A	35207199	3	1	233	1	0	0	0	0	1	0	0	0	15921	1291	45	2	24	2	TGIF2	20	35207199	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	2180892	35207199	27818321	79	18609										
TGM2	0	genome.wustl.edu	37	chr20	36776435	36776435	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	tcacggccggcgttcttcagGaacttggggttgacatctag	13	10	4	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	20	36776435	36776435	G	A	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	silent	c.609	p.F203	0.997	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	31	0	0	23	5	17.86	-	-	-	A	36776435	G	A	36776435	2	1	233	1	0	0	0	0	0	0	0	1	15925	1165	41	2		2	TGM2	20	36776435	Silent	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09	1569236	36776435	26249085	80	18610										
NCOA3	0	genome.wustl.edu	37	chr20	46252812	46252812	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	aaacagtaagacagatacgtCaaataaaagagcaaggtaat	8	5	1	3			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	20	46252812	46252812	C	A	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.241	p.Q81K	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_Nuclear_rcpt_coactivator,pfscan_HLH_DNA-bd	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	146	0	0	154	47	23.38	-	-	-	A	46252812	C	A	46252812	3	1	233	1	0	0	0	0	1	0	0	0	10302	827	29	2	247	2	NCOA3	20	46252812	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	9476377	46252812	16772708	81	18611										
MYH9	0	genome.wustl.edu	37	chr22	36745008	36745008	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	cagcaccgaggcttcgttgaGgcacgtgagctctgccatgt	13	12	1	2			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	22	36745008	36745008	G	C	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.274	p.L92V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	92	0	0	66	12	15.38	-	-	-	C	36745008	G	C	36745008	3	2	233	1	0	0	0	0	1	0	0	0	10114	1000	35	4	5768	4	MYH9	22	36745008	Missense_Mutation	SNP	G	TCGA-A8-A0A7-01A-11W-A019-09		36745008	14559558	82	18612										
EP300	0	genome.wustl.edu	37	chr22	41545099	41545099	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	accagggccagttccttcctCagactcagttcccatcacag	7	16	3	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	22	41545099	41545099	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	nonsense	c.2299	p.Q767*	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	316	1	0.32	300	40	11.76	-	-	-	T	41545099	C	T	41545099	4	4	233	1	0	0	0	0	0	1	0	0	5185	827	29	2	2349	2	EP300	22	41545099	Nonsense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	4800091	41545099	9759467	83	18613										
KDM5C	0	genome.wustl.edu	37	chrX	53223539	53223539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gcactgcagggcctcgccctCgggcagccgcacaggcagtc	14	17	0	0			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	X	53223539	53223539	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.3820	p.E1274K	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	53	0	0	59	12	16.44	-	-	-	T	53223539	C	T	53223539	3	4	233	1	0	0	0	0	1	0	0	0	8188	893	31	1	976	1	KDM5C	23	53223539	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09		53223539	102047021	84	18614										
ENOX2	0	genome.wustl.edu	37	chrX	129822967	129822967	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623529411764706	53	1.11040895144404e-20	3.93296551724138	4.50541871921182	3.71034482758621	0.00065632538458487	0.0173482763817298	40	gttattggtggaattccagtCatcattccaagagcaggatc	10	8	2	1			TCGA-A8-A0A7-01A-11W-A019-09	TCGA-A8-A0A7-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28be7b14-730d-44f7-bf93-a7590b4a08f8	42c2f167-31c5-4e16-8957-a01fd498e05d	X	129822967	129822967	C	T	SNP	ENOX2	ENST00000338144	human	ensembl	69_37n	-1	known	missense	c.210	p.M70I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675	407	0	0	229	30	11.58	-	-	-	T	129822967	C	T	129822967	3	4	233	1	0	0	0	0	1	0	0	0	5164	826	29	2	1666	2	ENOX2	23	129822967	Missense_Mutation	SNP	C	TCGA-A8-A0A7-01A-11W-A019-09	76599428	129822967	25447593	85	18615										
COL24A1	0	genome.wustl.edu	37	chr1	86578258	86578258	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gtagtcacttacctttggacCaggtaatccaggtaaaccag	9	10	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	1	86578258	86578258	C	A	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.1591	p.G531C	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	96	0	0	20	14	41.18	-	-	-	A	86578258	C	A	86578258	3	1	234	1	0	0	0	0	1	0	0	0	3713	594	21	4	3777	4	COL24A1	1	86578258	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		86578258	162672363	1	18616										
LAMB3	0	genome.wustl.edu	37	chr1	209790887	209790887	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aagtcacccagctgcttggtCatgcttgtcaccagcttttc	8	13	3	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	1	209790887	209790887	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.3096	p.M1032I	0.983	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	44	0	0	62	15	19.48	-	-	-	T	209790887	C	T	209790887	3	4	234	1	0	0	0	0	1	0	0	0	8666	826	29	2	434	2	LAMB3	1	209790887	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	123212629	209790887	39459734	2	18617										
UBXN4	0	genome.wustl.edu	37	chr2	136519446	136519446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cctagtggatgctcagatcaGagacctgcagaggacctcaa	11	11	3	3			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	2	136519446	136519446	G	C	SNP	UBXN4	ENST00000272638	human	ensembl	69_37n	1	known	missense	c.567	p.Q189H	0.982	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224	59	0	0	32	9	21.95	-	-	-	C	136519446	G	C	136519446	3	2	234	1	0	0	0	0	1	0	0	0	17013	933	33	2	589	2	UBXN4	2	136519446	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		136519446	106679927	3	18618										
TTN	0	genome.wustl.edu	37	chr2	179522843	179522843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tggttttttgggtggagccaCgggaatttctttttctgcgg	14	6	2	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	2	179522843	179522843	C	T	SNP	TTN	ENST00000589042	human	ensembl	69_37n	-1	putative	missense	c.37753	p.V12585M	0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	227	1	0.44	65	54	45.38	-	-	-	T	179522843	C	T	179522843	3	4	234	1	0	0	0	0	1	0	0	0	16832	551	19	1		1	TTN	2	179522843	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	43003397	179522843	63676530	4	18619										
SLC4A3	0	genome.wustl.edu	37	chr2	220502412	220502413	+	Frame_Shift_Ins	INS	-	-	C													0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gccctgccccccaccgagggINScccccccagcccgaggaacc							TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	2	220502412	220502413	-	C	INS	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	frame_shift_ins	c.2726_2727	p.S912fs	0.018:0.013	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	32	0	0	25	7	21.88	-	-	-	C	220502413	-	C	220502412	7	5	234	1	0	1	1	0	0	0	0	0	14744	1203	42	0	2788	0	SLC4A3	2	220502412	Frame_Shift_Ins	INS	-	TCGA-A8-A0A9-01A-11W-A019-09	40979569	220502412	22696961	5	18620										
USP19	0	genome.wustl.edu	37	chr3	49153206	49153206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ttacatgctccatgggtgtgCgggttgccacactgtctagc	12	11	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	49153206	49153206	C	T	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	missense	c.1334	p.R445H	0.990	pfam_DUF1872	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	20	0	0	3	7	70	-	-	-	T	49153206	C	T	49153206	3	4	234	1	0	0	0	0	1	0	0	0	17147	768	27	1	2690	1	USP19	3	49153206	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		49153206	148869224	6	18621										
CCDC66	0	genome.wustl.edu	37	chr3	56605211	56605211	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aaaggacattatttacagatGaacaggttgctttaaagaag	9	4	0	3			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	56605211	56605211	G	C	SNP	CCDC66	ENST00000394672	human	ensembl	69_37n	1	known	missense	c.817	p.E273Q	1.000	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	49	0	0	53	31	36.9	-	-	-	C	56605211	G	C	56605211	3	2	234	1	0	0	0	0	1	0	0	0	2865	1291	45	2	843	2	CCDC66	3	56605211	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	7452005	56605211	141417219	7	18622										
BBX	0	genome.wustl.edu	37	chr3	107429348	107429348	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	taaggatcattcagcagaagGagaaggggttggaaaacgac	14	5	2	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	107429348	107429348	G	C	SNP	BBX	ENST00000325805	human	ensembl	69_37n	1	known	missense	c.41	p.G14A	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	529	0	0	207	96	31.68	-	-	-	C	107429348	G	C	107429348	3	2	234	1	0	0	0	0	1	0	0	0	1347	1174	41	2	43	2	BBX	3	107429348	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	50824137	107429348	90593082	8	18623										
TRPC1	0	genome.wustl.edu	37	chr3	142443528	142443528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	atgtgcgggaggtgaaggagGagaatacgctgaatgagaag	18	3	0	4			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	142443528	142443528	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	11	0	0	1	4	80	-	-	-	A	142443528	G	A	142443528	3	1	234	1	0	0	0	0	1	0	0	0	16674	1175	41	2	129	2	TRPC1	3	142443528	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	35014180	142443528	55578902	9	18624										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	176	0	0	89	68	43.31	-	-	-	G	178952085	A	G	178952085	3	3	234	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-A8-A0A9-01A-11W-A019-09	36508557	178952085	19070345	10	18625										
ADAMTS3	0	genome.wustl.edu	37	chr4	73179510	73179510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tgtttttgctgattagcattCttccacatgcaatgaccctt	6	10	1	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	4	73179510	73179510	C	T	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	silent	c.1629	p.K543	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	155	0	0	88	15	14.56	-	-	-	T	73179510	C	T	73179510	2	4	234	1	0	0	0	0	0	0	0	1	267	912	32	2		2	ADAMTS3	4	73179510	Silent	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		73179510	117974766	11	18626										
HIST1H2AH	0	genome.wustl.edu	37	chr6	27115249	27115249	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gtcttgcccaatatccaggcCgtgctgctgcctaagaagac	10	13	1	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	27115249	27115249	C	G	SNP	HIST1H2AH	ENST00000377459	human	ensembl	69_37n	1	known	silent	c.342	p.A114	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AH	HGNC	ENSG00000184825	87	0	0	45	25	35.71	-	-	-	G	27115249	C	G	27115249	2	3	234	1	0	0	0	0	0	0	0	1	7185	639	23	3		3	HIST1H2AH	6	27115249	Silent	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		27115249	143999818	12	18627										
PTK7	0	genome.wustl.edu	37	chr6	43111207	43111207	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ggcagccctcccccctacaaGatgatccagaccattgggtt	9	15	0	3			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	43111207	43111207	G	T	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	missense	c.2100	p.K700N	1.000	NULL	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	43	0	0	18	12	40	-	-	-	T	43111207	G	T	43111207	3	4	234	1	0	0	0	0	1	0	0	0	12846	933	33	2	2154	2	PTK7	6	43111207	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	15995958	43111207	128003860	13	18628										
AKD1	0	genome.wustl.edu	37	chr6	109820405	109820405	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	caggcgagaaagcagctcttGaggtgtgatacataacttgt	12	7	1	3			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	109820405	109820405	G	A	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	nonsense	c.4888	p.Q1630*	0.101	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	96	0	0	44	21	32.31	-	-	-	A	109820405	G	A	109820405	4	1	234	1	0	0	0	0	0	1	0	0	460	1299	45	2	871	2	AKD1	6	109820405	Nonsense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	66709198	109820405	61294662	14	18629										
INHBA	0	genome.wustl.edu	37	chr7	41739757	41739757	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ggtaccggctgggtgacatcGggtctcttcttcaagtgcag	14	10	3	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	7	41739757	41739757	G	C	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	silent	c.216	p.P72	1.000	pfam_TGF-b_N,prints_Inhibin_betaA	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	216	0	0	157	54	25.59	-	-	-	C	41739757	G	C	41739757	2	2	234	1	0	0	0	0	0	0	0	1	7795	1103	39	3		3	INHBA	7	41739757	Silent	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		41739757	117398906	15	18630										
EPHB4	0	genome.wustl.edu	37	chr7	100410501	100410501	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cccatgatggaggcctcgctCagaaactcacgccgctgccg	11	16	2	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	7	100410501	100410501	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	silent	c.1986	p.L662	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	40	0	0	17	9	34.62	-	-	-	T	100410501	C	T	100410501	2	4	234	1	0	0	0	0	0	0	0	1	5214	813	29	2		2	EPHB4	7	100410501	Silent	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	58670744	100410501	58728162	16	18631										
KCNB2	0	genome.wustl.edu	37	chr8	73848282	73848282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tggacaactcaatgacaaccGccaattagcacacgtggagg	10	11	1	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	8	73848282	73848282	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	missense	c.692	p.R231H	0.368	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	274	0	0	136	93	40.61	-	-	-	A	73848282	G	A	73848282	3	1	234	1	0	0	0	0	1	0	0	0	8067	1087	38	1	698	1	KCNB2	8	73848282	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		73848282	72515740	17	18632										
ZNF250	0	genome.wustl.edu	37	chr8	146107075	146107075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tgcactcatatggcttctcgCccgtgtgggtcctcaggtgc	12	13	3	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	8	146107075	146107075	C	T	SNP	ZNF250	ENST00000292579	human	ensembl	69_37n	-1	known	missense	c.1508	p.G503D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF250	HGNC	ENSG00000196150	40	0	0	45	13	22.41	-	-	-	T	146107075	C	T	146107075	3	4	234	1	0	0	0	0	1	0	0	0	17891	739	26	4	178	4	ZNF250	8	146107075	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	72258793	146107075	256947	18	18633										
GRIN3A	0	genome.wustl.edu	37	chr9	104335778	104335778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tattccatacggtaagctgaCggggtcccacattagaccta	9	11	0	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	104335778	104335778	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.3026	p.R1009H	0.922	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	137	0	0	71	16	18.39	-	-	-	T	104335778	C	T	104335778	3	4	234	1	0	0	0	0	1	0	0	0	6834	536	19	1	325	1	GRIN3A	9	104335778	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		104335778	36877653	19	18634										
GTF3C4	0	genome.wustl.edu	37	chr9	135554618	135554618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aaaacctttttaagcaggtaGatttaatagacctagtacgc	7	7	0	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	135554618	135554618	G	A	SNP	GTF3C4	ENST00000372146	human	ensembl	69_37n	1	known	missense	c.1612	p.D538N	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484	151	0	0	45	32	41.56	-	-	-	A	135554618	G	A	135554618	3	1	234	1	0	0	0	0	1	0	0	0	6926	942	33	2	1618	2	GTF3C4	9	135554618	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	31218840	135554618	5658813	20	18635										
ZMYND11	0	genome.wustl.edu	37	chr10	292731	292731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ggattccttctgaaaacattCaagatatcacagtcaacatt	5	9	4	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	292731	292731	C	G	SNP	ZMYND11	ENST00000381591	human	ensembl	69_37n	1	known	missense	c.976	p.Q326E	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_PWWP,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171	38	0	0	18	10	35.71	-	-	-	G	292731	C	G	292731	3	3	234	1	0	0	0	0	1	0	0	0	17802	827	29	2	1014	2	ZMYND11	10	292731	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		292731	135242016	21	18636										
FBXO18	0	genome.wustl.edu	37	chr10	5945069	5945069	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ctgtgacccagcccttcggtCaaagatggacaaacagagat	10	11	1	3			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	5945069	5945069	C	T	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	nonsense	c.241	p.Q81*	0.989	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	38	0	0	28	18	39.13	-	-	-	T	5945069	C	T	5945069	4	4	234	1	0	0	0	0	0	1	0	0	5777	827	29	2	256	2	FBXO18	10	5945069	Nonsense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	5652338	5945069	129589678	22	18637										
FRMD4A	0	genome.wustl.edu	37	chr10	13702348	13702350	+	In_Frame_Del	DEL	CTT	CTT	-													0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tgagaggagcgcttcttgacCttctcatagggttcatctaa							TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	13702348	13702350	CTT	-	DEL	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	in_frame_del	c.1866_1864	p.K622in_frame_del	1.000:1.000:1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	21	0	0	4	7	63.64	-	-	-	-	13702350	CTT	-	13702348	7	5	234	1	0	1	0	1	0	0	0	0	6100	680	24	0	1273	0	FRMD4A	10	13702348	In_Frame_Del	DEL	CTT	TCGA-A8-A0A9-01A-11W-A019-09	7757279	13702348	121832399	23	18638										
ARHGAP21	0	genome.wustl.edu	37	chr10	24874774	24874774	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	atcttttgtcgtgctggggtCtttcctagtgctgttttctt	10	8	3	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	24874774	24874774	C	G	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.4444	p.D1482H	0.008	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	560	0	0	205	133	39.35	-	-	-	G	24874774	C	G	24874774	3	3	234	1	0	0	0	0	1	0	0	0	873	913	32	2	1436	2	ARHGAP21	10	24874774	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	11172426	24874774	110659973	24	18639										
FRA10AC1	0	genome.wustl.edu	37	chr10	95459821	95459821	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gctggattctccacagcgttCatcatcactaaaatcagaat	6	11	5	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	95459821	95459821	C	G	SNP	FRA10AC1	ENST00000359204	human	ensembl	69_37n	-1	known	missense	c.43	p.E15Q	1.000	NULL	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690	131	0	0	34	22	37.93	-	-	-	G	95459821	C	G	95459821	3	3	234	1	0	0	0	0	1	0	0	0	6089	835	29	2	956	2	FRA10AC1	10	95459821	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	70585047	95459821	40074926	25	18640										
ST5	0	genome.wustl.edu	37	chr11	8732399	8732399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tggcctcactcaccagtaagCgcctgcagtagccaaagcgt	10	14	2	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	8732399	8732399	C	T	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	missense	c.2345	p.R782H	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	24	0	0	15	4	21.05	-	-	-	T	8732399	C	T	8732399	3	4	234	1	0	0	0	0	1	0	0	0	15311	768	27	1	1108	1	ST5	11	8732399	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		8732399	126274117	26	18641										
PARVA	0	genome.wustl.edu	37	chr11	12495366	12495366	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ttccctttgagctggaccccGaggacacgatgctgggtaac	12	12	0	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	12495366	12495366	G	A	SNP	PARVA	ENST00000334956	human	ensembl	69_37n	1	known	missense	c.331	p.E111K	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVA	HGNC	ENSG00000197702	25	0	0	15	10	40	-	-	-	A	12495366	G	A	12495366	3	1	234	1	0	0	0	0	1	0	0	0	11541	1059	37	1	217	1	PARVA	11	12495366	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	3762967	12495366	122511150	27	18642										
QSER1	0	genome.wustl.edu	37	chr11	32955992	32955992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tgtgaacctttcaccagtacCtgcccttcagtcaaaaatga	6	12	3	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	32955992	32955992	C	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2801	p.P934L	0.138	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	202	0	0	68	57	45.6	-	-	-	T	32955992	C	T	32955992	3	4	234	1	0	0	0	0	1	0	0	0	12965	681	24	4	2807	4	QSER1	11	32955992	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	20460626	32955992	102050524	28	18643										
SBNO1	0	genome.wustl.edu	37	chr12	123812064	123812064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ctccagtaaagctcagttgtCgagcaatgtacattcctcta	7	11	2	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	12	123812064	123812064	C	T	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	missense	c.1601	p.R534Q	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	145	0	0	13	58	81.69	-	-	-	T	123812064	C	T	123812064	3	4	234	1	0	0	0	0	1	0	0	0	13949	884	31	1	2660	1	SBNO1	12	123812064	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		123812064	10039831	29	18644										
PRTG	0	genome.wustl.edu	37	chr15	55932020	55932020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gaggagggaccatgcgatcaCgaacagctattgagaaaaac	12	8	1	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	15	55932020	55932020	C	T	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.2144	p.R715H	0.988	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	66	0	0	74	13	14.94	-	-	-	T	55932020	C	T	55932020	3	4	234	1	0	0	0	0	1	0	0	0	12718	536	19	1	1340	1	PRTG	15	55932020	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		55932020	46599372	30	18645										
RASGRF1	0	genome.wustl.edu	37	chr15	79298692	79298692	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	agcagccgctccacactggcGtagcggatctgcagcacttt	11	14	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	15	79298692	79298692	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.1950	p.Y650	0.959	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	36	0	0	19	14	42.42	-	-	-	A	79298692	G	A	79298692	2	1	234	1	0	0	0	0	0	0	0	1	13155	1140	40	1		1	RASGRF1	15	79298692	Silent	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	23366672	79298692	23232700	31	18646										
CDH1	0	genome.wustl.edu	37	chr16	68849604	68849604	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ccgaggactttggcgtgggcCaggaaatcacatcctacact	11	12	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	16	68849604	68849604	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1507	p.Q503*	0.003	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	267	0	0	48	132	72.93	-	-	-	T	68849604	C	T	68849604	4	4	234	1	0	0	0	0	0	1	0	0	3124	595	21	4	1545	4	CDH1	16	68849604	Nonsense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		68849604	21505149	32	18647										
DHX38	0	genome.wustl.edu	37	chr16	72141353	72141353	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aagtccctcggggtgcaggaCctgctgcagttccacttcat	11	13	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	16	72141353	72141353	C	A	SNP	DHX38	ENST00000268482	human	ensembl	69_37n	1	known	missense	c.2715	p.D905E	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	91	0	0	21	50	70.42	-	-	-	A	72141353	C	A	72141353	3	1	234	1	0	0	0	0	1	0	0	0	4547	506	18	4	2789	4	DHX38	16	72141353	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	3291749	72141353	18213400	33	18648										
ITGAE	0	genome.wustl.edu	37	chr17	3656666	3656666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cagccaccagcaagaagtccGtgcttccatccatgtcaatg	8	14	1	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	3656666	3656666	G	A	SNP	ITGAE	ENST00000263087	human	ensembl	69_37n	-1	known	missense	c.1586	p.T529M	0.987	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAE	HGNC	ENSG00000083457	103	0	0	33	7	17.5	-	-	-	A	3656666	G	A	3656666	3	1	234	1	0	0	0	0	1	0	0	0	7939	1145	40	1	2025	1	ITGAE	17	3656666	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		3656666	77538544	34	18649										
CNTROB	0	genome.wustl.edu	37	chr17	7843471	7843471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cccagcaccagttggcattgGtgcagtctgaggtgcggcgg	16	11	1	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	7843471	7843471	G	T	SNP	CNTROB	ENST00000380262	human	ensembl	69_37n	1	known	missense	c.1222	p.V408L	0.629	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037	90	0	0	37	32	45.71	-	-	-	T	7843471	G	T	7843471	3	4	234	1	0	0	0	0	1	0	0	0	3681	1261	44	4	1256	4	CNTROB	17	7843471	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	4186805	7843471	73351739	35	18650										
APOH	0	genome.wustl.edu	37	chr17	64210602	64210602	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ttggggacttcgatagtgccAtctatacactgagcatcctc	9	11	1	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	64210602	64210602	A	T	SNP	APOH	ENST00000205948	human	ensembl	69_37n	-1	known	missense	c.951	p.D317E	0.688	pfam_Sushi_2,superfamily_Complement_control_module	pfam_Sushi_SCR_CCP,pfam_Sushi_2,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	APOH	HGNC	ENSG00000091583	175	0	0	70	149	68.04	-	-	-	T	64210602	A	T	64210602	3	4	234	1	0	0	0	0	1	0	0	0	806	214	8	5	94	5	APOH	17	64210602	Missense_Mutation	SNP	A	TCGA-A8-A0A9-01A-11W-A019-09	56367131	64210602	16984608	36	18651										
ZNF407	0	genome.wustl.edu	37	chr18	72344114	72344114	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	gaatcctgaaaaccagagtaGaaagctagacaccttagtaa	8	8	0	4			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	18	72344114	72344114	G	C	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.1139	p.R380T	0.033	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	116	0	0	37	10	21.28	-	-	-	C	72344114	G	C	72344114	3	2	234	1	0	0	0	0	1	0	0	0	17983	942	33	2	1141	2	ZNF407	18	72344114	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		72344114	5733134	37	18652										
MUC16	0	genome.wustl.edu	37	chr19	9086614	9086614	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cagcatagctgggttcaagaGaggaggagagagctgtattt	15	5	1	2			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	19	9086614	9086614	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.5201	p.S1734Y	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	373	0	0	287	86	23.06	-	-	-	T	9086614	G	T	9086614	3	4	234	1	0	0	0	0	1	0	0	0	10045	942	33	2	38658	2	MUC16	19	9086614	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09		9086614	50042369	38	18653										
TNPO2	0	genome.wustl.edu	37	chr19	12812575	12812576	+	Frame_Shift_Ins	INS	-	-	C													0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	ctgccccaacctgcacaacgINSccccccgggttgacaccgat							TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	19	12812575	12812576	-	C	INS	TNPO2	ENST00000425528	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2502_2501	p.V835fs	0.048:1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576	11	0	0	8	3	27.27	-	-	-	C	12812576	-	C	12812575	7	5	234	1	0	1	1	0	0	0	0	0	16431	1074	38	0	203	0	TNPO2	19	12812575	Frame_Shift_Ins	INS	-	TCGA-A8-A0A9-01A-11W-A019-09	3725961	12812575	46316408	39	18654										
PVALB	0	genome.wustl.edu	37	chr22	37209714	37209714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aaccccaattttgccgtcccCatctttgtctccagcagcca	5	17	2	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	22	37209714	37209714	C	T	SNP	PVALB	ENST00000216200	human	ensembl	69_37n	-1	known	missense	c.280	p.G94R	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	-	no_errors	PVALB	HGNC	ENSG00000100362	81	0	0	11	16	59.26	-	-	-	T	37209714	C	T	37209714	3	4	234	1	0	0	0	0	1	0	0	0	12919	594	21	4	60	4	PVALB	22	37209714	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		37209714	14094852	40	18655										
MKL1	0	genome.wustl.edu	37	chr22	40859267	40859267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	cagttcttcccgggtccggcGctgctggagtttcaactgta	12	12	2	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	22	40859267	40859267	G	A	SNP	MKL1	ENST00000422851	human	ensembl	69_37n	-1	putative	missense	c.46	p.R16C	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_stop_codon:bad_bp_length_for_coding_region	MKL1	HGNC	ENSG00000196588	390	0	0	203	48	19.12	-	-	-	A	40859267	G	A	40859267	3	1	234	1	0	0	0	0	1	0	0	0	9672	1102	38	1		1	MKL1	22	40859267	Missense_Mutation	SNP	G	TCGA-A8-A0A9-01A-11W-A019-09	3649553	40859267	10445299	41	18656										
SMC1A	0	genome.wustl.edu	37	chrX	53439190	53439190	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	aggccgcttctggttcaattCtgagtccttctcccttttgc	8	13	4	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	X	53439190	53439190	C	G	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.868	p.E290Q	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	62	0	0	15	33	68.75	-	-	-	G	53439190	C	G	53439190	3	3	234	1	0	0	0	0	1	0	0	0	14870	922	32	2	2913	2	SMC1A	23	53439190	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09		53439190	101831370	42	18657										
DLG3	0	genome.wustl.edu	37	chrX	69671832	69671832	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	caggttccccccacccgctaCtctcctattcccaggcacat	5	20	1	0			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	X	69671832	69671832	C	T	SNP	DLG3	ENST00000194900	human	ensembl	69_37n	1	known	silent	c.1155	p.Y385	1.000	pfam_PDZ_assoc,superfamily_PDZ,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG3	HGNC	ENSG00000082458	34	0	0	1	4	80	-	-	-	T	69671832	C	T	69671832	2	4	234	1	0	0	0	0	0	0	0	1	4592	576	20	4		4	DLG3	23	69671832	Silent	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	16232642	69671832	85598728	43	18658										
GPC3	0	genome.wustl.edu	37	chrX	132887945	132887945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295454545454545	13	0.00350635758590907	2.7439446366782	5.02352941176471	1.79411764705882	1	1	8	tcaggtcacgtcttgctcctCggaggcactcattgatgtcc	10	13	4	1			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	X	132887945	132887945	C	T	SNP	GPC3	ENST00000394299	human	ensembl	69_37n	-1	known	missense	c.596	p.R199Q	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257	493	0	0	53	131	71.2	-	-	-	T	132887945	C	T	132887945	3	4	234	1	0	0	0	0	1	0	0	0	6649	884	31	1	1243	1	GPC3	23	132887945	Missense_Mutation	SNP	C	TCGA-A8-A0A9-01A-11W-A019-09	63216113	132887945	22382615	44	18659										
CLSPN	0	genome.wustl.edu	37	chr1	36202522	36202522	+	Frame_Shift_Del	DEL	T	T	-													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tcaaattccatacctgagacTtagacgattcctttgccgcc							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	1	36202522	36202522	T	-	DEL	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	frame_shift_del	c.3902	p.K1301fs	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	100	0	0	53	83	59.29	-	-	-	-	36202522	T	-	36202522	7	5	235	1	0	1	0	1	0	0	0	0	3590	1609	56	0	125	0	CLSPN	1	36202522	Frame_Shift_Del	DEL	T	TCGA-A8-A0AB-01A-11W-A050-09		36202522	213048099	1	18660										
INPP5B	0	genome.wustl.edu	37	chr1	38409488	38409488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	cttcttccagcgtaaaatccCgcgagactggcactatctgg	9	13	2	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	1	38409488	38409488	C	T	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.230	p.R77Q	0.648	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	79	0	0	57	25	30.49	-	-	-	T	38409488	C	T	38409488	3	4	235	1	0	0	0	0	1	0	0	0	7809	652	23	1	2595	1	INPP5B	1	38409488	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	2206966	38409488	210841133	2	18661										
IPO13	0	genome.wustl.edu	37	chr1	44424472	44424472	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tcttggggcttctctccaacCtcttcaccacactggacatc	6	16	4	0			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	1	44424472	44424472	C	G	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	missense	c.1939	p.L647V	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	77	0	0	63	23	26.14	-	-	-	G	44424472	C	G	44424472	3	3	235	1	0	0	0	0	1	0	0	0	7848	681	24	4	1981	4	IPO13	1	44424472	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	6014984	44424472	204826149	3	18662										
CCDC108	0	genome.wustl.edu	37	chr2	219883882	219883883	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	agccttaaaggggtgaggacINSgggggggatctggctcatgc							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	2	219883882	219883883	-	G	INS	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3493_3492	p.V1164fs	0.001:0.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	32	0	0	33	4	10.81	-	-	-	G	219883883	-	G	219883882	7	5	235	1	0	1	1	0	0	0	0	0	2768	536	19	0	2344	0	CCDC108	2	219883882	Frame_Shift_Ins	INS	-	TCGA-A8-A0AB-01A-11W-A050-09		219883882	23315491	4	18663										
SMARCC1	0	genome.wustl.edu	37	chr3	47676719	47676719	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	gaggcaagagcagctgctgcGgctgtggcaacatttccttc	13	11	0	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	3	47676719	47676719	G	C	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	silent	c.2607	p.A869	0.884	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	320	0	0	327	297	47.6	-	-	-	C	47676719	G	C	47676719	2	2	235	1	0	0	0	0	0	0	0	1	14864	1103	39	3		3	SMARCC1	3	47676719	Silent	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		47676719	150345711	5	18664										
PCDHA10	0	genome.wustl.edu	37	chr5	140236812	140236812	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tctctgacgcctcacgttccGttcaagctggtgtccaccta	8	15	3	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	5	140236812	140236812	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	silent	c.1179	p.P393	0.878	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	76	0	0	29	25	46.3	-	-	-	A	140236812	G	A	140236812	2	1	235	1	0	0	0	0	0	0	0	1	11593	1132	40	1		1	PCDHA10	5	140236812	Silent	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		140236812	40678448	6	18665										
ALDH8A1	0	genome.wustl.edu	37	chr6	135239594	135239594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tttgatctcagtgaagaagtCgtaagagtccttggctccct	10	9	1	4			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	6	135239594	135239594	C	T	SNP	ALDH8A1	ENST00000265605	human	ensembl	69_37n	-1	known	missense	c.1423	p.D475N	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514	116	0	0	156	18	10.34	-	-	-	T	135239594	C	T	135239594	3	4	235	1	0	0	0	0	1	0	0	0	505	884	31	1	44	1	ALDH8A1	6	135239594	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09		135239594	35875473	7	18666										
ELN	0	genome.wustl.edu	37	chr7	73457000	73457000	+	Missense_Mutation	SNP	G	G	C													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	ctctggtgcctggtggagtgGctgacgctgctgcagcctat							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	7	73457000	73457000	G	C	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.289	p.A97P	0.079	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	36	0	0	51	14	21.54	-	-	-	C	73457000	G	C	73457000	3	2	235	1	0	0	0	0	1	0	0	0	5108	1203	42	4	311	4	ELN	7	73457000	Missense_Mutation	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		73457000	85681663	8	18667	204	2								
ELN	0	genome.wustl.edu	37	chr7	73457001	73457001	+	Missense_Mutation	SNP	C	C	T													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tctggtgcctggtggagtggCtgacgctgctgcagcctata							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	7	73457001	73457001	C	T	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.290	p.A97V	0.079	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	35	0	0	52	14	21.21	-	-	-	T	73457001	C	T	73457001	3	4	235	1	0	0	0	0	1	0	0	0	5108	797	28	4	312	4	ELN	7	73457001	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	1	73457001	85681662	9	18668	204	2								
TRIP6	0	genome.wustl.edu	37	chr7	100468023	100468023	+	Frame_Shift_Del	DEL	T	T	-													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	ccagcctccagaggatgagcTggataggctgacgaagaagc							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	7	100468023	100468023	T	-	DEL	TRIP6	ENST00000200457	human	ensembl	69_37n	1	known	frame_shift_del	c.767	p.L256fs	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077	146	0	0	69	23	23.71	-	-	-	-	100468023	T	-	100468023	7	5	235	1	0	1	0	1	0	0	0	0	16655	1580	55	0	785	0	TRIP6	7	100468023	Frame_Shift_Del	DEL	T	TCGA-A8-A0AB-01A-11W-A050-09	27011022	100468023	58670640	10	18669										
KIAA1462	0	genome.wustl.edu	37	chr10	30318244	30318244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	gaaatggggctgagcagccaCtcttctcagaattcctcgtg	11	11	2	2			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	10	30318244	30318244	C	G	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.833	p.S278T	0.884	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	126	0	0	57	66	53.66	-	-	-	G	30318244	C	G	30318244	3	3	235	1	0	0	0	0	1	0	0	0	8286	565	20	4	3254	4	KIAA1462	10	30318244	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09		30318244	105216503	11	18670										
SNRPN	0	genome.wustl.edu	37	chr15	25221514	25221514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tttgggtctggtgttgctgcGtggggagaacttggtatcca	16	6	1	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	15	25221514	25221514	G	T	SNP	SNRPN	ENST00000444203	human	ensembl	69_37n	1	known	missense	c.230	p.R77L	0.945	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739	116	1	0.85	65	73	52.9	-	-	-	T	25221514	G	T	25221514	3	4	235	1	0	0	0	0	1	0	0	0	14959	1145	40	3	228	3	SNRPN	15	25221514	Missense_Mutation	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		25221514	77309878	12	18671										
HERC2	0	genome.wustl.edu	37	chr15	28421867	28421867	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	gccagggtctgcgcgtctctActcccacatgcaacctggat	10	15	2	0			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	15	28421867	28421867	A	G	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.9480	p.S3160	0.333	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	189	0	0	85	45	34.35	-	-	-	G	28421867	A	G	28421867	2	3	235	1	0	0	0	0	0	0	0	1	7109	388	14	5		5	HERC2	15	28421867	Silent	SNP	A	TCGA-A8-A0AB-01A-11W-A050-09	3200353	28421867	74109525	13	18672										
SRP14	0	genome.wustl.edu	37	chr15	40330494	40330496	+	In_Frame_Del	DEL	TCT	TCT	-													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	taagctcaccacagtgctgaTcttcttcttcccatcggtag							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	15	40330494	40330496	TCT	-	DEL	SRP14	ENST00000267884	human	ensembl	69_37n	-1	known	in_frame_del	c.199_197	p.K66in_frame_del	1.000:1.000:1.000	pfam_Signal_recog_particle_SRP14,superfamily_Signal_recog_particle_SRP9/14	pfam_Signal_recog_particle_SRP14,superfamily_Signal_recog_particle_SRP9/14,prints_Antifreeze_1	-	no_errors	SRP14	HGNC	ENSG00000140319	80	0	0	28	41	59.42	-	-	-	-	40330496	TCT	-	40330494	7	5	235	1	0	1	0	1	0	0	0	0	15244	1435	50	0	223	0	SRP14	15	40330494	In_Frame_Del	DEL	TCT	TCGA-A8-A0AB-01A-11W-A050-09	11908627	40330494	62200898	14	18673										
FAM169B	0	genome.wustl.edu	37	chr15	99023896	99023896	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	aggattttagcttgttccttCacagagtgaggtagaaaaaa	10	5	1	3			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	15	99023896	99023896	C	A	SNP	FAM169B	ENST00000332908	human	ensembl	69_37n	-1	known	silent	c.117	p.V39	0.897	NULL	NULL	-	no_errors	FAM169B	HGNC	ENSG00000185087	101	0	0	42	75	64.1	-	-	-	A	99023896	C	A	99023896	2	1	235	1	0	0	0	0	0	0	0	1	5528	813	29	2		2	FAM169B	15	99023896	Silent	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	58693402	99023896	3507496	15	18674										
CDH1	0	genome.wustl.edu	37	chr16	68847278	68847279	+	Frame_Shift_Ins	INS	-	-	A													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	ccacactgaaagtgactgatINSgctgatgcccccaatacccc							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	16	68847278	68847279	-	A	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1200_1201	p.A400fs	0.868:0.825	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	96	0	0	22	83	79.05	-	-	-	A	68847279	-	A	68847278	7	5	235	1	0	1	1	0	0	0	0	0	3124	1461	51	0	1234	0	CDH1	16	68847278	Frame_Shift_Ins	INS	-	TCGA-A8-A0AB-01A-11W-A050-09		68847278	21507475	16	18675										
CHD3	0	genome.wustl.edu	37	chr17	7796758	7796758	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	cagcagcagcagctgtagctGagcaggtgtcagctgctgtc	14	11	1	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	17	7796758	7796758	G	C	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.664	p.E222Q	1.000	superfamily_HMG_superfamily	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	100	0	0	82	15	15.46	-	-	-	C	7796758	G	C	7796758	3	2	235	1	0	0	0	0	1	0	0	0	3355	1291	45	2	963	2	CHD3	17	7796758	Missense_Mutation	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		7796758	73398452	17	18676										
MYH10	0	genome.wustl.edu	37	chr17	8439105	8439105	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	ataatgtataatgcaaaaatCagctttgtcttttaattgtc	5	5	2	0			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	17	8439105	8439105	C	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.1720	p.D574Y	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	49	0	0	11	43	79.63	-	-	-	A	8439105	C	A	8439105	3	1	235	1	0	0	0	0	1	0	0	0	10102	826	29	2	4322	2	MYH10	17	8439105	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	642347	8439105	72756105	18	18677										
MYO1D	0	genome.wustl.edu	37	chr17	30821847	30821847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	cgggctggggctggttgagcCgcgtctccacggagacggtg	19	11	1	2			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	17	30821847	30821847	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	missense	c.2951	p.R984Q	0.980	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	25	0	0	27	4	12.9	-	-	-	T	30821847	C	T	30821847	3	4	235	1	0	0	0	0	1	0	0	0	10143	652	23	1	73	1	MYO1D	17	30821847	Missense_Mutation	SNP	C	TCGA-A8-A0AB-01A-11W-A050-09	22382742	30821847	50373363	19	18678										
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	tccagtggccatcaaagtgtTgagggaaaacacatccccca	9	12	1	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	95	0	0	98	100	50.51	-	-	-	C	37880220	T	C	37880220	3	2	235	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-A8-A0AB-01A-11W-A050-09	7058373	37880220	43314990	20	18679										
MAST1	0	genome.wustl.edu	37	chr19	12984565	12984565	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	cgctctgcgcgatgcaagtcGgccggcaacatccctctatc	10	16	2	0			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	19	12984565	12984565	G	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	silent	c.3594	p.S1198	0.997	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	55	0	0	34	30	46.15	-	-	-	A	12984565	G	A	12984565	2	1	235	1	0	0	0	0	0	0	0	1	9395	1103	39	1		1	MAST1	19	12984565	Silent	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		12984565	46144418	21	18680										
RUNX1	0	genome.wustl.edu	37	chr21	36252946	36252946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	ttctcagctcagccgagtagTtttcatcattgccagccatc	7	13	4	0			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	21	36252946	36252946	T	C	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.416	p.N139S	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	122	0	0	73	64	46.38	-	-	-	C	36252946	T	C	36252946	3	2	235	1	0	0	0	0	1	0	0	0	13832	1725	60	5	1079	5	RUNX1	21	36252946	Missense_Mutation	SNP	T	TCGA-A8-A0AB-01A-11W-A050-09		36252946	11876949	22	18681										
LARGE	0	genome.wustl.edu	37	chr22	33679330	33679331	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	agatcgagctggatgacagaINScttcctgaaaagaggggaca							TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	22	33679330	33679331	-	C	INS	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1735_1734	p.S578fs	1.000:1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	57	0	0	56	11	16.42	-	-	-	C	33679331	-	C	33679330	7	5	235	1	0	1	1	0	0	0	0	0	8681	275	10	0	547	0	LARGE	22	33679330	Frame_Shift_Ins	INS	-	TCGA-A8-A0AB-01A-11W-A050-09		33679330	17625236	23	18682										
FAM47A	0	genome.wustl.edu	37	chrX	34149384	34149384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.988624875494547	0.710204081632653	1.77551020408163	0	1	1	0	agtcttggaatgctctaggcGgagatgggactctccagtct	13	9	4	1			TCGA-A8-A0AB-01A-11W-A050-09	TCGA-A8-A0AB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad2a2f5d-dad6-4c03-b235-20810d6d34dc	5e1600e7-1950-44a9-a2d2-d32a8649d2ea	X	34149384	34149384	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1012	p.R338C	0.452	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	128	0	0	66	21	24.14	-	-	-	A	34149384	G	A	34149384	3	1	235	1	0	0	0	0	1	0	0	0	5615	1116	39	1	1367	1	FAM47A	23	34149384	Missense_Mutation	SNP	G	TCGA-A8-A0AB-01A-11W-A050-09		34149384	121121176	24	18683										
PIGR	0	genome.wustl.edu	37	chr1	207112736	207112736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	aggtgggtgggtagtagcacGtgatggacactgagttacct	16	6	0	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	1	207112736	207112736	G	T	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.116	p.T39K	0.090	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	56	0	0	20	32	61.54	-	-	-	T	207112736	G	T	207112736	3	4	236	1	0	0	0	0	1	0	0	0	11971	1145	40	3	2214	3	PIGR	1	207112736	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		207112736	42137885	1	18684										
OR2T3	0	genome.wustl.edu	37	chr1	248637580	248637580	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	cagggctctgaggagcatgaTgcagtcaagaatgaaccaag	13	8	2	4			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	1	248637580	248637580	T	A	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	missense	c.929	p.M310K	0.019	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	543	0	0	360	123	25.41	-	-	-	A	248637580	T	A	248637580	3	1	236	1	0	0	0	0	1	0	0	0	11096	1464	51	5	931	5	OR2T3	1	248637580	Missense_Mutation	SNP	T	TCGA-A8-A0AD-01A-11W-A071-09	41524844	248637580	613041	2	18685										
POMC	0	genome.wustl.edu	37	chr2	25384121	25384121	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tcgtccttcttctcggccgcCaccagcaggctgtgctccag	10	17	2	0			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	2	25384121	25384121	C	A	SNP	POMC	ENST00000264708	human	ensembl	69_37n	-1	known	silent	c.633	p.V211	0.000	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138	29	0	0	17	7	29.17	-	-	-	A	25384121	C	A	25384121	2	1	236	1	0	0	0	0	0	0	0	1	12316	581	21	4		4	POMC	2	25384121	Silent	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09		25384121	217815252	3	18686										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48808110	48808110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	agaatcatcttcagacagccCactcgcaatatcaggaggag	9	11	4	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	2	48808110	48808110	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.338	p.P113L	0.056	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	119	0	0	138	31	18.34	-	-	-	T	48808110	C	T	48808110	3	4	236	1	0	0	0	0	1	0	0	0	15408	594	21	4	340	4	STON1-GTF2A1L	2	48808110	Missense_Mutation	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09	23423989	48808110	194391263	4	18687										
OTOS	0	genome.wustl.edu	37	chr2	241079498	241079498	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	cctccttcctcctgcacaggCttggcccctgcaaaggaaga	9	16	0	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	2	241079498	241079498	C	T	SNP	OTOS	ENST00000319460	human	ensembl	69_37n	-1	known	silent	c.66	p.K22	1.000	NULL	NULL	-	no_errors	OTOS	HGNC	ENSG00000178602	47	0	0	21	11	33.33	-	-	-	T	241079498	C	T	241079498	2	4	236	1	0	0	0	0	0	0	0	1	11382	796	28	4		4	OTOS	2	241079498	Silent	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09	192271388	241079498	2119875	5	18688										
IL17RC	0	genome.wustl.edu	37	chr3	9959098	9959098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	cctcaggacgctacccactgCtctccggtgagtctggaacc	10	16	3	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	3	9959098	9959098	C	T	SNP	IL17RC	ENST00000295981	human	ensembl	69_37n	1	known	silent	c.99	p.C33	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702	37	0	0	27	9	24.32	-	-	-	T	9959098	C	T	9959098	2	4	236	1	0	0	0	0	0	0	0	1	7695	805	28	4		4	IL17RC	3	9959098	Silent	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09		9959098	188063332	6	18689										
PCDHGA9	0	genome.wustl.edu	37	chr5	140782854	140782854	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ctttaaagtcctggttgaagAcagagtgaaactgtacggaa							TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	5	140782854	140782854	A	-	DEL	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	frame_shift_del	c.335	p.D112fs	0.989	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	132	0	0	69	35	33.65	-	-	-	-	140782854	A	-	140782854	7	5	236	1	0	1	0	1	0	0	0	0	11634	275	10	0	337	0	PCDHGA9	5	140782854	Frame_Shift_Del	DEL	A	TCGA-A8-A0AD-01A-11W-A071-09		140782854	40132406	7	18690										
NSD1	0	genome.wustl.edu	37	chr5	176562356	176562356	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ttggcctccatgatcaatgtAgagtatttaaatgggtctgc	10	7	2	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	5	176562356	176562356	A	G	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	silent	c.252	p.V84	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	115	0	0	64	27	29.67	-	-	-	G	176562356	A	G	176562356	2	3	236	1	0	0	0	0	0	0	0	1	10742	407	15	5		5	NSD1	5	176562356	Silent	SNP	A	TCGA-A8-A0AD-01A-11W-A071-09	35779502	176562356	4352904	8	18691										
HNRNPAB	0	genome.wustl.edu	37	chr5	177634110	177634110	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tgcagattgaggccattgaaTtgccaatggatccaaagttg	11	7	0	3			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	5	177634110	177634110	T	C	SNP	HNRNPAB	ENST00000358344	human	ensembl	69_37n	1	known	silent	c.553	p.L185	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451	145	0	0	74	59	44.36	-	-	-	C	177634110	T	C	177634110	2	2	236	1	0	0	0	0	0	0	0	1	7312	1490	52	5		5	HNRNPAB	5	177634110	Silent	SNP	T	TCGA-A8-A0AD-01A-11W-A071-09	1071754	177634110	3281150	9	18692										
CUX1	0	genome.wustl.edu	37	chr7	101840509	101840509	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	actgttcgtggcaaggagccAtttcacaagatgaaacagtt	10	8	1	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	7	101840509	101840509	A	T	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	silent	c.1851	p.P617	0.007	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	68	0	0	56	32	36.36	-	-	-	T	101840509	A	T	101840509	2	4	236	1	0	0	0	0	0	0	0	1	4095	204	8	5		5	CUX1	7	101840509	Silent	SNP	A	TCGA-A8-A0AD-01A-11W-A071-09		101840509	57298154	10	18693										
PAX4	0	genome.wustl.edu	37	chr7	127253883	127253883	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ccggtccctgggtgggtaccCcggggagtctcagagccact	15	14	1	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	7	127253883	127253883	C	A	SNP	PAX4	ENST00000341640	human	ensembl	69_37n	-1	known	silent	c.465	p.R155	0.998	superfamily_Homeodomain-like	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331	79	0	0	62	38	37.62	-	-	-	A	127253883	C	A	127253883	2	1	236	1	0	0	0	0	0	0	0	1	11554	610	22	4		4	PAX4	7	127253883	Silent	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09	25413374	127253883	31884780	11	18694										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24259485	24259485	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	gcacattttgaaagatacctTttatctcagaaaccaaagtg	6	8	1	3			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	8	24259485	24259485	T	G	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	silent	c.1200	p.L400	0.045	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	76	0	0	69	32	31.68	-	-	-	G	24259485	T	G	24259485	2	3	236	1	0	0	0	0	0	0	0	1	254	1828	64	5		5	ADAMDEC1	8	24259485	Silent	SNP	T	TCGA-A8-A0AD-01A-11W-A071-09		24259485	122104537	12	18695										
LRRC55	0	genome.wustl.edu	37	chr11	56949488	56949488	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tccagcactgctgttgcctgCtgcctaagatgggtgacact	11	12	0	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	11	56949488	56949488	C	T	SNP	LRRC55	ENST00000497933	human	ensembl	69_37n	1	known	silent	c.121	p.L41	0.039	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908	77	0	0	46	13	22.03	-	-	-	T	56949488	C	T	56949488	2	4	236	1	0	0	0	0	0	0	0	1	9077	796	28	4		4	LRRC55	11	56949488	Silent	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09		56949488	78057028	13	18696										
NPAS4	0	genome.wustl.edu	37	chr11	66190213	66190213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	agagtgcaggcaacaaactcGtgcttattcgaggccgattc	11	10	0	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	11	66190213	66190213	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.499	p.V167M	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	104	0	0	40	20	33.33	-	-	-	A	66190213	G	A	66190213	3	1	236	1	0	0	0	0	1	0	0	0	10637	1145	40	1	513	1	NPAS4	11	66190213	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09	9240725	66190213	68816303	14	18697										
SCARB1	0	genome.wustl.edu	37	chr12	125271972	125271972	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ctctgcaaaccagagcagcgGcaggaccacaggctcaatct	10	14	3	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	12	125271972	125271972	G	C	SNP	SCARB1	ENST00000415380	human	ensembl	69_37n	-1	known	missense	c.1234	p.P412A	1.000	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	13	0	0	10	6	37.5	-	-	-	C	125271972	G	C	125271972	3	2	236	1	0	0	0	0	1	0	0	0	13968	1203	42	4	431	4	SCARB1	12	125271972	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		125271972	8579923	15	18698										
PCDH9	0	genome.wustl.edu	37	chr13	67205358	67205358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tcaccagagttgggatcagaGttgccatctgcttcagtcct	10	11	4	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	13	67205358	67205358	G	T	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.3324	p.N1108K	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	114	0	0	18	38	67.86	-	-	-	T	67205358	G	T	67205358	3	4	236	1	0	0	0	0	1	0	0	0	11591	1020	36	4	397	4	PCDH9	13	67205358	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		67205358	47964520	16	18699										
CTCF	0	genome.wustl.edu	37	chr16	67645922	67645922	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ggcgttcaaatttggatcgtCacatgaaaagccacactgat	9	9	2	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	16	67645922	67645922	C	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.850	p.H284Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	91	0	0	23	50	68.49	-	-	-	T	67645922	C	T	67645922	3	4	236	1	0	0	0	0	1	0	0	0	4032	826	29	2	856	2	CTCF	16	67645922	Missense_Mutation	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09		67645922	22708831	17	18700										
ZFHX3	0	genome.wustl.edu	37	chr16	72830410	72830411	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tggctggtgtggacgccggcINStgaggcggcgctgccggaag							TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	16	72830410	72830411	-	T	INS	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6171_6170	p.P2058fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	32	0	0	15	8	34.78	-	-	-	T	72830411	-	T	72830410	7	5	236	1	0	1	1	0	0	0	0	0	17730	796	28	0	4948	0	ZFHX3	16	72830410	Frame_Shift_Ins	INS	-	TCGA-A8-A0AD-01A-11W-A071-09	5184488	72830410	17524343	18	18701										
NF1	0	genome.wustl.edu	37	chr17	29508508	29508509	+	Splice_Site	INS	-	-	T													0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tataaatagcctggaaaaggINStaagttacaacctctctggt							TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	17	29508508	29508509	-	T	INS	NF1	ENST00000358273	human	ensembl	69_37n	1	known	splice_site_ins	c.654+1_654+1	e6+1	1.000:1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	47	0	0	101	12	10.62	-	-	-	T	29508509	-	T	29508508	8	5	236	1	0	1	1	0	0	0	1	0	10428	1275	44	0	677	0	NF1	17	29508508	Splice_Site	INS	-	TCGA-A8-A0AD-01A-11W-A071-09		29508508	51686702	19	18702										
KIF2B	0	genome.wustl.edu	37	chr17	51900728	51900728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ccatcagggaccagcgtaccGccacgaaatgggttgcgatg	13	12	1	0			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	17	51900728	51900728	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.334	p.A112T	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	135	0	0	92	55	37.16	-	-	-	A	51900728	G	A	51900728	3	1	236	1	0	0	0	0	1	0	0	0	8350	1087	38	1	336	1	KIF2B	17	51900728	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09	22392220	51900728	29294482	20	18703										
GRIN2C	0	genome.wustl.edu	37	chr17	72840611	72840611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tcttctcattctggcagatcCctgagagccacactgtctcc	7	15	4	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	17	72840611	72840611	C	T	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	missense	c.2387	p.G796E	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	46	0	0	29	13	30.95	-	-	-	T	72840611	C	T	72840611	3	4	236	1	0	0	0	0	1	0	0	0	6832	623	22	4	1322	4	GRIN2C	17	72840611	Missense_Mutation	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09	20939883	72840611	8354599	21	18704										
NPC1	0	genome.wustl.edu	37	chr18	21118629	21118629	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tgcagcgaacgcaggcagggTcaaccactggcggagacatg	15	11	1	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	18	21118629	21118629	T	A	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.2918	p.D973V	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	93	0	0	68	18	20.69	-	-	-	A	21118629	T	A	21118629	3	1	236	1	0	0	0	0	1	0	0	0	10642	1667	58	5	942	5	NPC1	18	21118629	Missense_Mutation	SNP	T	TCGA-A8-A0AD-01A-11W-A071-09		21118629	56958619	22	18705										
CIRBP	0	genome.wustl.edu	37	chr19	1272041	1272041	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ggtcctacagagacagttatGacagttacggtaagtcacac	10	9	1	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	19	1272041	1272041	G	A	SNP	CIRBP	ENST00000444172	human	ensembl	69_37n	1	known	missense	c.334	p.D112N	0.999	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622	25	0	0	16	7	30.43	-	-	-	A	1272041	G	A	1272041	3	1	236	1	0	0	0	0	1	0	0	0	3462	1290	45	2	511	2	CIRBP	19	1272041	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		1272041	57856942	23	18706										
RPS5	0	genome.wustl.edu	37	chr19	58899562	58899562	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	agaccccagacatcaagctcTttgggaagtggagcaccgat	11	11	2	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	19	58899562	58899562	T	C	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.58	p.F20L	1.000	superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	11	0	0	3	6	66.67	-	-	-	C	58899562	T	C	58899562	3	2	236	1	0	0	0	0	1	0	0	0	13734	1609	56	5	60	5	RPS5	19	58899562	Missense_Mutation	SNP	T	TCGA-A8-A0AD-01A-11W-A071-09	57627521	58899562	229421	24	18707										
IFT52	0	genome.wustl.edu	37	chr20	42271262	42271262	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	tggagttcaagaaattgaacCaggtacagagcctacaaggc	11	8	1	3			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	20	42271262	42271262	C	T	SNP	IFT52	ENST00000373030	human	ensembl	69_37n	1	known	nonsense	c.1264	p.Q422*	1.000	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	35	0	0	31	13	29.55	-	-	-	T	42271262	C	T	42271262	4	4	236	1	0	0	0	0	0	1	0	0	7615	595	21	4	1310	4	IFT52	20	42271262	Nonsense_Mutation	SNP	C	TCGA-A8-A0AD-01A-11W-A071-09		42271262	20754258	25	18708										
RUNX1	0	genome.wustl.edu	37	chr21	36171616	36171616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	acttgagagtcgactggaaaGttctgcagagagggttgtca	14	6	2	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	21	36171616	36171616	G	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.949	p.L317F	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	78	0	0	71	13	15.48	-	-	-	A	36171616	G	A	36171616	3	1	236	1	0	0	0	0	1	0	0	0	13832	1029	36	4	501	4	RUNX1	21	36171616	Missense_Mutation	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		36171616	11958279	26	18709										
OTUD6A	0	genome.wustl.edu	37	chrX	69283094	69283094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	gaggtgatccaggccgactcGcccaccttgatcatcgggga	13	13	1	2			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	X	69283094	69283094	G	A	SNP	OTUD6A	ENST00000338352	human	ensembl	69_37n	1	known	silent	c.720	p.S240	0.008	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401	23	0	0	24	13	35.14	-	-	-	A	69283094	G	A	69283094	2	1	236	1	0	0	0	0	0	0	0	1	11389	1074	38	1		1	OTUD6A	23	69283094	Silent	SNP	G	TCGA-A8-A0AD-01A-11W-A071-09		69283094	85987466	27	18710										
MTM1	0	genome.wustl.edu	37	chrX	149809752	149809752	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.904872247913239	0.992673992673993	0	1.07539682539683	0.333333333333333	0.930327025915261	0	ttcctcacagggcttgcccaAtcaccattggagaataactt	7	12	2	1			TCGA-A8-A0AD-01A-11W-A071-09	TCGA-A8-A0AD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e6511fa-4f6e-4184-84b8-9e9e7a863632	6efc67f6-3999-44ca-859b-c1fb69c7c699	X	149809752	149809752	A	G	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.539	p.N180S	1.000	NULL	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	268	0	0	236	41	14.8	-	-	-	G	149809752	A	G	149809752	3	3	236	1	0	0	0	0	1	0	0	0	10009	101	4	5	565	5	MTM1	23	149809752	Missense_Mutation	SNP	A	TCGA-A8-A0AD-01A-11W-A071-09	80526658	149809752	5460808	28	18711										
SLC35E2	0	genome.wustl.edu	37	chr1	1666251	1666251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttgtagctgaagctcttcccGctcctcccgatcactgggac	9	15	2	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	1666251	1666251	G	A	SNP	SLC35E2	ENST00000246421	human	ensembl	69_37n	-1	known	missense	c.610	p.R204W	0.979	NULL	pfam_DMT	-	no_errors	SLC35E2	HGNC	ENSG00000215790	19	0	0	5	8	61.54	-	-	-	A	1666251	G	A	1666251	3	1	237	1	0	0	0	0	1	0	0	0	14674	1086	38	1	1448	1	SLC35E2	1	1666251	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		1666251	247584370	1	18712										
TMCO2	0	genome.wustl.edu	37	chr1	40713810	40713810	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gactattagataatcttgctCcagctgtgcaaatcatcttg	7	9	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	40713810	40713810	C	G	SNP	TMCO2	ENST00000372766	human	ensembl	69_37n	1	known	missense	c.145	p.P49A	0.997	NULL	NULL	-	no_errors	TMCO2	HGNC	ENSG00000188800	59	0	0	55	12	17.91	-	-	-	G	40713810	C	G	40713810	3	3	237	1	0	0	0	0	1	0	0	0	16091	855	30	2	147	2	TMCO2	1	40713810	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	39047559	40713810	208536811	2	18713										
USP33	0	genome.wustl.edu	37	chr1	78205076	78205076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	catactcgaagagtggtaagGttcacagttagataatgctt	10	6	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	78205076	78205076	G	T	SNP	USP33	ENST00000357428	human	ensembl	69_37n	-1	known	missense	c.318	p.N106K	0.996	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP33	HGNC	ENSG00000077254	78	0	0	58	11	15.94	-	-	-	T	78205076	G	T	78205076	3	4	237	1	0	0	0	0	1	0	0	0	17161	1252	44	4	2602	4	USP33	1	78205076	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	37491266	78205076	171045545	3	18714										
AIM2	0	genome.wustl.edu	37	chr1	159043162	159043162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tagctacttgtattctgtttGcagtatgtagtttgcctgtg	10	6	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	159043162	159043162	G	A	SNP	AIM2	ENST00000368130	human	ensembl	69_37n	-1	known	missense	c.128	p.A43V	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,superfamily_NA-bd_OB-fold-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	45	0	0	62	11	15.07	-	-	-	A	159043162	G	A	159043162	3	1	237	1	0	0	0	0	1	0	0	0	432	1319	46	4	923	4	AIM2	1	159043162	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	80838086	159043162	90207459	4	18715										
ATP1A4	0	genome.wustl.edu	37	chr1	160124840	160124840	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttcttctctgcacagggccaTagccaccaaagggcaaagga	10	12	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	160124840	160124840	T	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	silent	c.213	p.H71	0.002	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	28	0	0	48	10	17.24	-	-	-	C	160124840	T	C	160124840	2	2	237	1	0	0	0	0	0	0	0	1	1135	1403	49	5		5	ATP1A4	1	160124840	Silent	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	1081678	160124840	89125781	5	18716										
KCNT2	0	genome.wustl.edu	37	chr1	196394988	196394988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gcagggatacctactttgctCtcaataggtcttgatcttta	8	9	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	196394988	196394988	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1115	p.R372K	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	55	0	0	53	37	41.11	-	-	-	T	196394988	C	T	196394988	3	4	237	1	0	0	0	0	1	0	0	0	8146	913	32	2	2364	2	KCNT2	1	196394988	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	36270148	196394988	52855633	6	18717										
CENPF	0	genome.wustl.edu	37	chr1	214816025	214816025	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttaaaggccgaaaatttggtCttgtcaacgaatctgagaaa	9	6	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	214816025	214816025	C	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	silent	c.4344	p.V1448	0.151	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	38	0	0	52	7	11.86	-	-	-	A	214816025	C	A	214816025	2	1	237	1	0	0	0	0	0	0	0	1	3260	900	32	2		2	CENPF	1	214816025	Silent	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	18421037	214816025	34434596	7	18718										
HEATR1	0	genome.wustl.edu	37	chr1	236766623	236766623	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctgactgaacaacggtgcttCaaactgctcaaaggaaggat	10	9	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	1	236766623	236766623	C	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.196	p.E66Q	1.000	NULL	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	69	0	0	104	16	13.33	-	-	-	G	236766623	C	G	236766623	3	3	237	1	0	0	0	0	1	0	0	0	7078	835	29	2	6410	2	HEATR1	1	236766623	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	21950598	236766623	12483998	8	18719										
KCNS3	0	genome.wustl.edu	37	chr2	18112363	18112363	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gctttaagcagtctgttgacCaaagcaccctcctgcggttt	9	12	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	2	18112363	18112363	C	G	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	1	known	missense	c.88	p.Q30E	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	35	0	0	31	10	24.39	-	-	-	G	18112363	C	G	18112363	3	3	237	1	0	0	0	0	1	0	0	0	8144	595	21	4	90	4	KCNS3	2	18112363	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		18112363	225087010	9	18720										
CAD	0	genome.wustl.edu	37	chr2	27447691	27447691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ccacagtgcagacctcccagGggctggccgacaaggtctat	12	14	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	2	27447691	27447691	G	T	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.1333	p.G445W	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	49	0	0	43	8	15.69	-	-	-	T	27447691	G	T	27447691	3	4	237	1	0	0	0	0	1	0	0	0	2590	1232	43	4	1371	4	CAD	2	27447691	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	9335328	27447691	215751682	10	18721										
ANKRD36	0	genome.wustl.edu	37	chr2	97864218	97864218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agtgtcttctgagaaaccacCaggcttgaaggtaatgaaac	10	8	2	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	2	97864218	97864218	C	T	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.2672	p.P891L	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	193	0	0	130	16	10.96	-	-	-	T	97864218	C	T	97864218	3	4	237	1	0	0	0	0	1	0	0	0	664	594	21	4	2842	4	ANKRD36	2	97864218	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	70416527	97864218	145335155	11	18722										
TBC1D8	0	genome.wustl.edu	37	chr2	101638182	101638182	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtataatagtttaatcttctCattcatttctccattataca	2	8	4	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	2	101638182	101638182	C	G	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	missense	c.2788	p.E930Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	64	0	0	41	9	18	-	-	-	G	101638182	C	G	101638182	3	3	237	1	0	0	0	0	1	0	0	0	15720	835	29	2	695	2	TBC1D8	2	101638182	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	3773964	101638182	141561191	12	18723										
BCS1L	0	genome.wustl.edu	37	chr2	219527298	219527298	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cctcacggactccagcctctCtgatgaccgactcaaccacc	6	19	3	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	2	219527298	219527298	C	T	SNP	BCS1L	ENST00000359273	human	ensembl	69_37n	1	known	missense	c.785	p.S262F	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_BCS1_N,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582	11	0	0	13	8	38.1	-	-	-	T	219527298	C	T	219527298	3	4	237	1	0	0	0	0	1	0	0	0	1393	913	32	2	803	2	BCS1L	2	219527298	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	117889116	219527298	23672075	13	18724										
CADM2	0	genome.wustl.edu	37	chr3	85984959	85984959	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	accatcgactccttttccacAagaaggacagcctttaattt	5	12	0	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	3	85984959	85984959	A	C	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.722	p.Q241P	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	68	0	0	44	15	25.42	-	-	-	C	85984959	A	C	85984959	3	2	237	1	0	0	0	0	1	0	0	0	2592	130	5	5	809	5	CADM2	3	85984959	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09		85984959	112037471	14	18725										
COL6A6	0	genome.wustl.edu	37	chr3	130318623	130318623	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cagaagaggctggccaggccCccccgggacaccaggctcca	13	17	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	3	130318623	130318623	C	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.4622	p.P1541H	0.013	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	45	0	0	41	10	19.61	-	-	-	A	130318623	C	A	130318623	3	1	237	1	0	0	0	0	1	0	0	0	3733	623	22	4	4696	4	COL6A6	3	130318623	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	44333664	130318623	67703807	15	18726										
LRRIQ4	0	genome.wustl.edu	37	chr3	169550895	169550895	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	catggaagaacccccaaaagAagtgtgtgctgaaggcaatg	12	8	0	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	3	169550895	169550895	A	G	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	missense	c.1454	p.E485G	0.039	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	33	0	0	28	12	30	-	-	-	G	169550895	A	G	169550895	3	3	237	1	0	0	0	0	1	0	0	0	9097	246	9	5	1468	5	LRRIQ4	3	169550895	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	39232272	169550895	28471535	16	18727										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0	34	7	17.07	-	-	-	G	178936095	A	G	178936095	3	3	237	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	9385200	178936095	19086335	17	18728										
DCUN1D1	0	genome.wustl.edu	37	chr3	182683349	182683349	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtatctattgtacagctgttCtaacttcttcctgtccaatg	6	10	3	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	3	182683349	182683349	C	A	SNP	DCUN1D1	ENST00000292782	human	ensembl	69_37n	-1	known	nonsense	c.196	p.E66*	1.000	NULL	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D1	HGNC	ENSG00000043093	44	0	0	50	11	18.03	-	-	-	A	182683349	C	A	182683349	4	1	237	1	0	0	0	0	0	1	0	0	4344	922	32	2	607	2	DCUN1D1	3	182683349	Nonsense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	3747254	182683349	15339081	18	18729										
DGKQ	0	genome.wustl.edu	37	chr4	961414	961414	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tctcaccgcgtcgtcgccatCaaagatcttcagcgtttgct	8	14	4	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	4	961414	961414	C	G	SNP	DGKQ	ENST00000273814	human	ensembl	69_37n	-1	known	missense	c.910	p.D304H	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ras-assoc,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKQ	HGNC	ENSG00000145214	22	0	0	13	4	23.53	-	-	-	G	961414	C	G	961414	3	3	237	1	0	0	0	0	1	0	0	0	4509	826	29	2	1982	2	DGKQ	4	961414	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		961414	190192862	19	18730										
TACC3	0	genome.wustl.edu	37	chr4	1742588	1742588	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agaaggaactttccaaagctGaaatccagaaagttctaaaa	7	7	1	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	4	1742588	1742588	G	T	SNP	TACC3	ENST00000313288	human	ensembl	69_37n	1	known	nonsense	c.2098	p.E700*	0.000	pfam_TACC	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810	26	0	0	16	6	27.27	-	-	-	T	1742588	G	T	1742588	4	4	237	1	0	0	0	0	0	1	0	0	15595	1291	45	2	2144	2	TACC3	4	1742588	Nonsense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	781174	1742588	189411688	20	18731										
LNX1	0	genome.wustl.edu	37	chr4	54343119	54343119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ccggctgacctctgtcagttCgaccccatccacattcaaca	6	17	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	4	54343119	54343119	C	T	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.1693	p.E565K	0.975	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	56	0	0	37	10	21.28	-	-	-	T	54343119	C	T	54343119	3	4	237	1	0	0	0	0	1	0	0	0	8921	893	31	1	505	1	LNX1	4	54343119	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	52600531	54343119	136811157	21	18732										
NPY1R	0	genome.wustl.edu	37	chr4	164247139	164247139	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtatttgtctttgtacgcatCaagtgttacattttggaacg	9	6	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	4	164247139	164247139	C	T	SNP	NPY1R	ENST00000296533	human	ensembl	69_37n	-1	known	missense	c.568	p.D190N	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	46	0	0	31	10	24.39	-	-	-	T	164247139	C	T	164247139	3	4	237	1	0	0	0	0	1	0	0	0	10681	826	29	2	594	2	NPY1R	4	164247139	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	109904020	164247139	26907137	22	18733										
TRIO	0	genome.wustl.edu	37	chr5	14358362	14358362	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agtcggtggaggccgtgcagGacctcatcaagcgctttggc	15	11	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	5	14358362	14358362	G	C	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.2122	p.D708H	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	24	0	0	11	6	35.29	-	-	-	C	14358362	G	C	14358362	3	2	237	1	0	0	0	0	1	0	0	0	16648	1174	41	2	2168	2	TRIO	5	14358362	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		14358362	166556898	23	18734										
TRIM23	0	genome.wustl.edu	37	chr5	64905155	64905155	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cttcttgttgctgcctgagcCaaatcaatttttcacgaaca	6	11	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	5	64905155	64905155	C	A	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	missense	c.959	p.W320L	1.000	smart_Bbox_C	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	63	0	0	42	9	17.65	-	-	-	A	64905155	C	A	64905155	3	1	237	1	0	0	0	0	1	0	0	0	16593	595	21	4	856	4	TRIM23	5	64905155	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	50546793	64905155	116010105	24	18735										
TTC37	0	genome.wustl.edu	37	chr5	94852114	94852114	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttggtccatgcaacagcattCtaaaaaacataacatttttt	4	8	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	5	94852114	94852114	C	A	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	splice_site	c.2578-1	e22-1	1.000	-	-	-	no_errors	TTC37	HGNC	ENSG00000198677	39	0	0	29	10	25.64	-	-	-	A	94852114	C	A	94852114	5	1	237	1	0	0	0	0	0	0	1	0	16802	927	32	2	2193	2	TTC37	5	94852114	Splice_Site	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	29946959	94852114	86063146	25	18736										
DOCK2	0	genome.wustl.edu	37	chr5	169141180	169141180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ccgggatgtgttctccatttCcaccctggtgtgctccacaa	9	14	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	5	169141180	169141180	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.1808	p.S603F	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	30	0	0	26	13	33.33	-	-	-	T	169141180	C	T	169141180	3	4	237	1	0	0	0	0	1	0	0	0	4722	855	30	2	1878	2	DOCK2	5	169141180	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	74289066	169141180	11774080	26	18737										
HIST1H2BN	0	genome.wustl.edu	37	chr6	27806523	27806523	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gcccagaagaaggacggcaaGaagcgcaagcgcagccgcaa	14	12	0	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	6	27806523	27806523	G	A	SNP	HIST1H2BN	ENST00000396980	human	ensembl	69_37n	1	known	silent	c.84	p.K28	1.000	superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BN	HGNC	ENSG00000233822	69	0	0	74	12	13.95	-	-	-	A	27806523	G	A	27806523	2	1	237	1	0	0	0	0	0	0	0	1	7204	933	33	2		2	HIST1H2BN	6	27806523	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		27806523	143308544	27	18738										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34803151	34803151	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtgctgactgactcacagctCaaggctatgatgaagtatgc	11	9	2	4			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	6	34803151	34803151	C	T	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	silent	c.750	p.L250	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	43	0	0	48	8	14.29	-	-	-	T	34803151	C	T	34803151	2	4	237	1	0	0	0	0	0	0	0	1	17065	813	29	2		2	UHRF1BP1	6	34803151	Silent	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	6996628	34803151	136311916	28	18739										
KIAA1009	0	genome.wustl.edu	37	chr6	84881431	84881431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tacttgattatataatcgttCattttcctttttaaaaacag	3	6	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	6	84881431	84881431	C	T	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.2173	p.E725K	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	97	0	0	74	11	12.94	-	-	-	T	84881431	C	T	84881431	3	4	237	1	0	0	0	0	1	0	0	0	8255	835	29	2	2082	2	KIAA1009	6	84881431	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	50078280	84881431	86233636	29	18740										
PDE10A	0	genome.wustl.edu	37	chr6	165756912	165756912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttctgcatatatatcatttgCcgtcaattttgtaacgggcc	7	9	3	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	6	165756912	165756912	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.2065	p.A689T	0.765	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	45	0	0	55	14	20.29	-	-	-	T	165756912	C	T	165756912	3	4	237	1	0	0	0	0	1	0	0	0	11703	739	26	4	320	4	PDE10A	6	165756912	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	80875481	165756912	5358155	30	18741										
TCP10	0	genome.wustl.edu	37	chr6	167796310	167796310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tcagctcaccggcatctcccCggcattgctgtcctccctgg	9	18	3	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	6	167796310	167796310	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.52	p.G18R	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	34	0	0	28	4	12.5	-	-	-	T	167796310	C	T	167796310	3	4	237	1	0	0	0	0	1	0	0	0	15805	652	23	1	956	1	TCP10	6	167796310	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	2039398	167796310	3318757	31	18742										
EIF4H	0	genome.wustl.edu	37	chr7	73588716	73588718	+	In_Frame_Del	DEL	GGC	GGC	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tcggagcggagacggcaaatGgcggacttcgacacctacga							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	7	73588716	73588718	GGC	-	DEL	EIF4H	ENST00000265753	human	ensembl	69_37n	1	known	in_frame_del	c.3_5	p.A2in_frame_del	1.000:1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682	16	0	0	5	3	37.5	-	-	-	-	73588718	GGC	-	73588716	7	5	237	1	0	1	0	1	0	0	0	0	5076	1348	47	0	5	0	EIF4H	7	73588716	In_Frame_Del	DEL	GGC	TCGA-AC-A23C-01A-12D-A167-09		73588716	85549947	32	18743										
CDK14	0	genome.wustl.edu	37	chr7	90355956	90355956	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	aacccctggacacaattcctGaggataaaaaagtcagagtt	8	9	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	7	90355956	90355956	G	A	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	missense	c.199	p.E67K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	45	0	0	42	9	17.65	-	-	-	A	90355956	G	A	90355956	3	1	237	1	0	0	0	0	1	0	0	0	3159	1291	45	2	151	2	CDK14	7	90355956	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	16767240	90355956	68782707	33	18744										
DOCK4	0	genome.wustl.edu	37	chr7	111398727	111398727	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gcctttgtgaaatggtcggtCatagcggaatttccagatgt	12	7	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	7	111398727	111398727	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.4282	p.D1428N	1.000	pfam_DOCK	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	68	0	0	58	14	19.44	-	-	-	T	111398727	C	T	111398727	3	4	237	1	0	0	0	0	1	0	0	0	4724	826	29	2	1697	2	DOCK4	7	111398727	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	21042771	111398727	47739936	34	18745										
ZNF786	0	genome.wustl.edu	37	chr7	148767947	148767947	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tccccgctgtgcagcagctgGtgggccttcatgtcggcctt	13	14	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	7	148767947	148767947	G	T	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.1917	p.H639Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	24	0	0	18	4	18.18	-	-	-	T	148767947	G	T	148767947	3	4	237	1	0	0	0	0	1	0	0	0	18251	1252	44	4	435	4	ZNF786	7	148767947	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	37369220	148767947	10370716	35	18746										
FER1L6	0	genome.wustl.edu	37	chr8	125029949	125029949	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	aagcgacttacgctctgctgGcaggagctggtatgtgaaaa	13	8	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	8	125029949	125029949	G	C	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.2004	p.W668C	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	52	0	0	40	16	28.57	-	-	-	C	125029949	G	C	125029949	3	2	237	1	0	0	0	0	1	0	0	0	5861	1212	42	4	2062	4	FER1L6	8	125029949	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		125029949	21334073	36	18747										
TLN1	0	genome.wustl.edu	37	chr9	35713277	35713277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tttggtgctgttgcccaggtCctgggtacacttctccatct	10	12	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	9	35713277	35713277	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.3268	p.D1090N	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	35	0	0	24	9	27.27	-	-	-	T	35713277	C	T	35713277	3	4	237	1	0	0	0	0	1	0	0	0	16042	855	30	2	4485	2	TLN1	9	35713277	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		35713277	105500154	37	18748										
ZNF462	0	genome.wustl.edu	37	chr9	109746549	109746552	+	Frame_Shift_Del	DEL	TACC	TACC	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gttttccgctgtgataagtgTaccttcacctgctccagtga							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	TACC	TACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	9	109746549	109746552	TACC	-	DEL	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	frame_shift_del	c.7095_7098	p.T2366fs	0.998:1.000:1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	35	0	0	32	6	15.79	-	-	-	-	109746552	TACC	-	109746549	7	5	237	1	0	1	0	1	0	0	0	0	18022	1644	57	0	6949	0	ZNF462	9	109746549	Frame_Shift_Del	DEL	TACC	TCGA-AC-A23C-01A-12D-A167-09	74033272	109746549	31466882	38	18749										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112930764	112930764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctatgccaaccaggaggaagAagacaacgaataaacttcct	8	10	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	9	112930764	112930764	A	G	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.3299	p.E1100G	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	41	0	0	32	12	27.27	-	-	-	G	112930764	A	G	112930764	3	3	237	1	0	0	0	0	1	0	0	0	11483	246	9	5	3341	5	PALM2-AKAP2	9	112930764	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	3184215	112930764	28282667	39	18750										
ZNF883	0	genome.wustl.edu	37	chr9	115760106	115760106	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtttctttccagtatgaattCtatgatgttgagtaagggca	10	5	2	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	9	115760106	115760106	C	G	SNP	ZNF883	ENST00000427548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.967	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623	76	0	0	65	8	10.96	-	-	-	G	115760106	C	G	115760106	1	3	237	0	1	0	0	0	0	0	0	0	18291	913	32	2		2	ZNF883	9	115760106	RNA	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	2829342	115760106	25453325	40	18751										
USP6NL	0	genome.wustl.edu	37	chr10	11505403	11505403	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agcgcggggtgcgctgctcgAcctttgccttccatggtgta	14	12	0	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	11505403	11505403	A	C	SNP	USP6NL	ENST00000277575	human	ensembl	69_37n	-1	known	silent	c.1575	p.G525	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429	37	0	0	48	8	14.29	-	-	-	C	11505403	A	C	11505403	2	2	237	1	0	0	0	0	0	0	0	1	17184	262	10	5		5	USP6NL	10	11505403	Silent	SNP	A	TCGA-AC-A23C-01A-12D-A167-09		11505403	124029344	41	18752										
LYZL2	0	genome.wustl.edu	37	chr10	30915760	30915760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gccagccctcgagaatatttTtgccagtttgcaacgagtgt	10	10	0	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	30915760	30915760	T	C	SNP	LYZL2	ENST00000375318	human	ensembl	69_37n	-1	known	missense	c.223	p.K75E	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL2	HGNC	ENSG00000151033	113	0	0	101	16	13.68	-	-	-	C	30915760	T	C	30915760	3	2	237	1	0	0	0	0	1	0	0	0	9199	1850	64	5	377	5	LYZL2	10	30915760	Missense_Mutation	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	19410357	30915760	104618987	42	18753										
PTEN	0	genome.wustl.edu	37	chr10	89711928	89711929	+	Frame_Shift_Del	DEL	AA	AA	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tattattatagctacctgttAaagaatcatctggattatag							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	89711928	89711929	AA	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.546_547	p.K183fs	1.000:1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	53	0	0	39	16	29.09	-	-	-	-	89711929	AA	-	89711928	7	5	237	1	0	1	0	1	0	0	0	0	12818	359	13	0	568	0	PTEN	10	89711928	Frame_Shift_Del	DEL	AA	TCGA-AC-A23C-01A-12D-A167-09	58796168	89711928	45822819	43	18754										
DNMBP	0	genome.wustl.edu	37	chr10	101715245	101715245	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtaggacggtgtcgagatagGagcttgggggataccgcatt	17	6	0	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	101715245	101715245	G	C	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	silent	c.1986	p.L662	0.000	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	29	0	0	29	4	12.12	-	-	-	C	101715245	G	C	101715245	2	2	237	1	0	0	0	0	0	0	0	1	4709	1161	41	2		2	DNMBP	10	101715245	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	12003317	101715245	33819502	44	18755										
SMC3	0	genome.wustl.edu	37	chr10	112362317	112362317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gaagaaaggagatgtggaggGcagtcagtctcaagatgaag	16	4	2	4			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	112362317	112362317	G	A	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.3191	p.G1064D	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	63	0	0	34	8	19.05	-	-	-	A	112362317	G	A	112362317	3	1	237	1	0	0	0	0	1	0	0	0	14873	1203	42	4	3293	4	SMC3	10	112362317	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	10647072	112362317	23172430	45	18756										
GPAM	0	genome.wustl.edu	37	chr10	113920522	113920522	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agcagctgtatggcatgcatTactacatcttctgaatttcc	7	10	2	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	10	113920522	113920522	T	G	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	silent	c.1599	p.V533	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	73	0	0	28	17	37.78	-	-	-	G	113920522	T	G	113920522	2	3	237	1	0	0	0	0	0	0	0	1	6638	1741	61	5		5	GPAM	10	113920522	Silent	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	1558205	113920522	21614225	46	18757										
MUC2	0	genome.wustl.edu	37	chr11	1096456	1096456	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	acaacttcggagtttacatcGacaactaccactgcgatccc	6	14	0	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	1096456	1096456	G	C	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.6481	p.D2161H	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	22	0	0	21	7	25	-	-	-	C	1096456	G	C	1096456	3	2	237	1	0	0	0	0	1	0	0	0	10047	1058	37	3	6607	3	MUC2	11	1096456	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		1096456	133910060	47	18758										
VWCE	0	genome.wustl.edu	37	chr11	61026260	61026260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ggtggtgggagaaagcacgcGaggcccgaggagggtgatgg	22	6	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	61026260	61026260	G	A	SNP	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	missense	c.2755	p.R919C	0.033	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	19	0	0	20	11	35.48	-	-	-	A	61026260	G	A	61026260	3	1	237	1	0	0	0	0	1	0	0	0	17342	1058	37	1	116	1	VWCE	11	61026260	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	59929804	61026260	73980256	48	18759										
RAB3IL1	0	genome.wustl.edu	37	chr11	61674931	61674931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	atgttggcttctcgaaccatCttgtgagcttcctaggaaga	10	9	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	61674931	61674931	C	G	SNP	RAB3IL1	ENST00000394836	human	ensembl	69_37n	-1	known	missense	c.372	p.K124N	1.000	pfam_Sec2p	pfam_Sec2p	-	no_errors	RAB3IL1	HGNC	ENSG00000167994	42	0	0	43	5	10.42	-	-	-	G	61674931	C	G	61674931	3	3	237	1	0	0	0	0	1	0	0	0	13020	912	32	2	804	2	RAB3IL1	11	61674931	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	648671	61674931	73331585	49	18760										
INPPL1	0	genome.wustl.edu	37	chr11	71942144	71942144	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cccatgacatctatgtctttGggacccaggagaactcagtg	10	11	3	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	71942144	71942144	G	C	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	missense	c.1408	p.G470R	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	24	0	0	16	10	38.46	-	-	-	C	71942144	G	C	71942144	3	2	237	1	0	0	0	0	1	0	0	0	7815	1348	47	4	1454	4	INPPL1	11	71942144	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	10267213	71942144	63064372	50	18761										
ANGPTL5	0	genome.wustl.edu	37	chr11	101777841	101777841	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttttaatacttactacacatGaaatgtttttcttctcgtgt	4	7	2	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	101777841	101777841	G	A	SNP	ANGPTL5	ENST00000334289	human	ensembl	69_37n	-1	known	silent	c.234	p.F78	0.998	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL5	HGNC	ENSG00000187151	56	0	0	40	14	25.93	-	-	-	A	101777841	G	A	101777841	2	1	237	1	0	0	0	0	0	0	0	1	617	1281	45	2		2	ANGPTL5	11	101777841	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	29835697	101777841	33228675	51	18762										
ETS1	0	genome.wustl.edu	37	chr11	128426192	128426192	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtttatgttcctacctgagaCacagtgttcaagaccagtag	9	9	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	11	128426192	128426192	C	A	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	missense	c.208	p.V70F	0.998	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	58	0	0	40	20	33.33	-	-	-	A	128426192	C	A	128426192	3	1	237	1	0	0	0	0	1	0	0	0	5312	478	17	4	1367	4	ETS1	11	128426192	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	26648351	128426192	6580324	52	18763										
KIAA1467	0	genome.wustl.edu	37	chr12	13208573	13208573	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gatctggtgcttaacctgcaGaagaatggaggggtcaaaaa	13	6	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	12	13208573	13208573	G	A	SNP	KIAA1467	ENST00000197268	human	ensembl	69_37n	1	known	silent	c.126	p.Q42	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	KIAA1467	HGNC	ENSG00000084444	32	0	0	17	6	26.09	-	-	-	A	13208573	G	A	13208573	2	1	237	1	0	0	0	0	0	0	0	1	8287	933	33	2		2	KIAA1467	12	13208573	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		13208573	120643322	53	18764										
PTPRO	0	genome.wustl.edu	37	chr12	15636960	15636960	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tgataataacatcgttgtctCattagaagcttcagacgtca	7	8	3	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	12	15636960	15636960	C	T	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	missense	c.128	p.S43L	0.998	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	45	0	0	34	10	22.73	-	-	-	T	15636960	C	T	15636960	3	4	237	1	0	0	0	0	1	0	0	0	12892	838	29	2	134	2	PTPRO	12	15636960	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	2428387	15636960	118214935	54	18765										
OR6C76	0	genome.wustl.edu	37	chr12	55820676	55820676	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	actttgatattagtaattctCtcctatacttacatcatcag	3	9	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	12	55820676	55820676	C	G	SNP	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	silent	c.639	p.L213	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	64	0	0	49	13	20.97	-	-	-	G	55820676	C	G	55820676	2	3	237	1	0	0	0	0	0	0	0	1	11273	900	32	2		2	OR6C76	12	55820676	Silent	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	40183716	55820676	78031219	55	18766										
DNAJC14	0	genome.wustl.edu	37	chr12	56222324	56222325	+	Frame_Shift_Del	DEL	CT	CT	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gagcagtccctgctgagtccCtgagtcctgagaatgaaggt							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	12	56222324	56222325	CT	-	DEL	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	frame_shift_del	c.119_118	p.R40fs	1.000:1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	80	0	0	67	11	13.75	-	-	-	-	56222325	CT	-	56222324	7	5	237	1	0	1	0	1	0	0	0	0	4668	681	24	0	2013	0	DNAJC14	12	56222324	Frame_Shift_Del	DEL	CT	TCGA-AC-A23C-01A-12D-A167-09	401648	56222324	77629571	56	18767										
EP400	0	genome.wustl.edu	37	chr12	132475210	132475212	+	In_Frame_Del	DEL	AGA	AGA	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ataaaactacgagtagaattAgaagaaaaaaggaagaaggc							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	12	132475210	132475212	AGA	-	DEL	EP400	ENST00000333577	human	ensembl	69_37n	1	known	in_frame_del	c.2688_2690	p.E898in_frame_del	0.995:0.999:1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	40	0	0	22	8	26.67	-	-	-	-	132475212	AGA	-	132475210	7	5	237	1	0	1	0	1	0	0	0	0	5186	417	15	0	2607	0	EP400	12	132475210	In_Frame_Del	DEL	AGA	TCGA-AC-A23C-01A-12D-A167-09	76252886	132475210	1376685	57	18768										
ZMYM5	0	genome.wustl.edu	37	chr13	20398780	20398780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	catgtttactaagaatatgtGataaatgttgccaatctttg	7	5	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	13	20398780	20398780	G	A	SNP	ZMYM5	ENST00000337963	human	ensembl	69_37n	-1	known	missense	c.1847	p.S616L	1.000	NULL	pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM5	HGNC	ENSG00000132950	56	0	0	35	9	20.45	-	-	-	A	20398780	G	A	20398780	3	1	237	1	0	0	0	0	1	0	0	0	17799	1294	45	2	166	2	ZMYM5	13	20398780	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		20398780	94771098	58	18769										
TBC1D4	0	genome.wustl.edu	37	chr13	75900540	75900540	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctggcggtgtccctggtggaGaatcccctggtgagtagtcc	15	11	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	13	75900540	75900540	G	A	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.1826	p.S609F	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	42	0	0	37	9	19.57	-	-	-	A	75900540	G	A	75900540	3	1	237	1	0	0	0	0	1	0	0	0	15717	942	33	2	2118	2	TBC1D4	13	75900540	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	55501760	75900540	39269338	59	18770										
SIX4	0	genome.wustl.edu	37	chr14	61180171	61180171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gctggacagtctggagcttgGcaagctcttttttgtctgtt	12	8	3	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	14	61180171	61180171	G	A	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	missense	c.2300	p.A767V	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	58	0	0	38	11	22.45	-	-	-	A	61180171	G	A	61180171	3	1	237	1	0	0	0	0	1	0	0	0	14438	1203	42	4	49	4	SIX4	14	61180171	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		61180171	46169369	60	18771										
SLC24A4	0	genome.wustl.edu	37	chr14	92909751	92909751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gctctgctggcaggtggtccGtctgacgtggtgggccgtgt	18	10	2	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	14	92909751	92909751	G	A	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.590	p.R197H	0.001	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	33	0	0	27	12	30.77	-	-	-	A	92909751	G	A	92909751	3	1	237	1	0	0	0	0	1	0	0	0	14557	1145	40	1	565	1	SLC24A4	14	92909751	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	31729580	92909751	14439789	61	18772										
AHNAK2	0	genome.wustl.edu	37	chr14	105416842	105416842	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tgtctttggcagtcaccgccTtgtcggccagggacaggtcc	13	13	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	14	105416842	105416842	T	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.4946	p.K1649M	0.025	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	45	0	0	32	8	20	-	-	-	A	105416842	T	A	105416842	3	1	237	1	0	0	0	0	1	0	0	0	415	1609	56	5	12445	5	AHNAK2	14	105416842	Missense_Mutation	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	12507091	105416842	1932698	62	18773										
MTMR10	0	genome.wustl.edu	37	chr15	31233955	31233955	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	acgtcgacttcatcagccagGagggagagcttgtgaaaggc	14	9	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	15	31233955	31233955	G	C	SNP	MTMR10	ENST00000435680	human	ensembl	69_37n	-1	known	silent	c.2052	p.L684	0.024	pfam_Myotubularin_assoc	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR10	HGNC	ENSG00000166912	30	0	0	32	6	15.79	-	-	-	C	31233955	G	C	31233955	2	2	237	1	0	0	0	0	0	0	0	1	10011	1161	41	2		2	MTMR10	15	31233955	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		31233955	71297437	63	18774										
ZFYVE19	0	genome.wustl.edu	37	chr15	41100005	41100005	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tgcagaccctgcggtgctggGagccaccatggagagtaggt	16	10	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	15	41100005	41100005	G	C	SNP	ZFYVE19	ENST00000355341	human	ensembl	69_37n	1	known	missense	c.218	p.G73A	0.000	superfamily_Znf_FYVE_PHD,smart_Znf_FYVE	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE19	HGNC	ENSG00000166140	27	0	0	21	9	30	-	-	-	C	41100005	G	C	41100005	3	2	237	1	0	0	0	0	1	0	0	0	17761	1174	41	2	220	2	ZFYVE19	15	41100005	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	9866050	41100005	61431387	64	18775										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84657563	84657563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtggaaagttcttctgtgctGtatgcaggtaatgcccactg	12	8	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	15	84657563	84657563	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.3837	p.L1279	0.094	smart_Ig_sub,pfscan_Ig-like	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	51	0	0	37	8	17.78	-	-	-	A	84657563	G	A	84657563	2	1	237	1	0	0	0	0	0	0	0	1	276	1364	48	4		4	ADAMTSL3	15	84657563	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	43557558	84657563	17873829	65	18776										
ALPK3	0	genome.wustl.edu	37	chr15	85382269	85382269	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	acggagctggaccgctactgTggcttgccaaaatatgagat	12	9	0	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	15	85382269	85382269	T	C	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	silent	c.969	p.C323	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	27	0	0	25	8	24.24	-	-	-	C	85382269	T	C	85382269	2	2	237	1	0	0	0	0	0	0	0	1	546	1702	59	5		5	ALPK3	15	85382269	Silent	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	724706	85382269	17149123	66	18777										
N4BP1	0	genome.wustl.edu	37	chr16	48595832	48595832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	taagctcagaaacaggagtcCcagctttatttcttgcctct	7	11	3	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	16	48595832	48595832	C	T	SNP	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	missense	c.722	p.G241E	0.999	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	36	0	0	41	9	18	-	-	-	T	48595832	C	T	48595832	3	4	237	1	0	0	0	0	1	0	0	0	10181	623	22	4	1992	4	N4BP1	16	48595832	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		48595832	41758921	67	18778										
GLG1	0	genome.wustl.edu	37	chr16	74501683	74501684	+	Frame_Shift_Del	DEL	AG	AG	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gccatattgcacagcggaacAgaagtttttgatgtcactct							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	16	74501683	74501684	AG	-	DEL	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	frame_shift_del	c.2500_2499	p.F833fs	1.000:1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	68	0	0	57	14	19.72	-	-	-	-	74501684	AG	-	74501683	7	5	237	1	0	1	0	1	0	0	0	0	6488	188	7	0	1155	0	GLG1	16	74501683	Frame_Shift_Del	DEL	AG	TCGA-AC-A23C-01A-12D-A167-09	25905851	74501683	15853070	68	18779										
TP53	0	genome.wustl.edu	37	chr17	7578408	7578408	+	Frame_Shift_Del	DEL	C	C	-													0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cgctcatggtgggggcagcgCctcacaacctccgtcatgtg							TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	7578408	7578408	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.522	p.R174fs	0.992	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	18	5	21.74	-	-	-	-	7578408	C	-	7578408	7	5	237	1	0	1	0	1	0	0	0	0	16477	738	26	0	776	0	TP53	17	7578408	Frame_Shift_Del	DEL	C	TCGA-AC-A23C-01A-12D-A167-09		7578408	73616802	69	18780										
NCOR1	0	genome.wustl.edu	37	chr17	15965432	15965432	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gactgacatgattcgtagctGagcagttggatccaaaggtg	13	7	0	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	15965432	15965432	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.5374	p.Q1792*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	45	0	0	21	14	40	-	-	-	A	15965432	G	A	15965432	4	1	237	1	0	0	0	0	0	1	0	0	10307	1299	45	2	1992	2	NCOR1	17	15965432	Nonsense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	8387024	15965432	65229778	70	18781										
TAOK1	0	genome.wustl.edu	37	chr17	27778590	27778590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ccatcaactaacagagcaggCagcctgaaggaccctgaaat	9	12	1	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	27778590	27778590	C	T	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	silent	c.24	p.G8	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	29	0	0	29	6	17.14	-	-	-	T	27778590	C	T	27778590	2	4	237	1	0	0	0	0	0	0	0	1	15639	697	25	4		4	TAOK1	17	27778590	Silent	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	11813158	27778590	53416620	71	18782										
NF1	0	genome.wustl.edu	37	chr17	29553598	29553598	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tttccgccacctctgtgaggAagcagatatccggtgtgggg	14	10	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	29553598	29553598	A	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.2147	p.E716V	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	53	0	0	27	8	22.86	-	-	-	T	29553598	A	T	29553598	3	4	237	1	0	0	0	0	1	0	0	0	10428	246	9	5	2278	5	NF1	17	29553598	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	1775008	29553598	51641612	72	18783										
SLFN11	0	genome.wustl.edu	37	chr17	33679925	33679925	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	cttctcttggatattggtctGagagaggagggaggccactg	15	7	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	33679925	33679925	G	C	SNP	SLFN11	ENST00000308377	human	ensembl	69_37n	-1	known	nonsense	c.2156	p.S719*	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN11	HGNC	ENSG00000172716	45	0	0	34	12	26.09	-	-	-	C	33679925	G	C	33679925	4	2	237	1	0	0	0	0	0	1	0	0	14822	1294	45	2	553	2	SLFN11	17	33679925	Nonsense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	4126327	33679925	47515285	73	18784										
ZPBP2	0	genome.wustl.edu	37	chr17	38032947	38032947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctctgcagtggtttgtagtcCtgcgacttttagtcctgatg	11	9	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	38032947	38032947	C	T	SNP	ZPBP2	ENST00000348931	human	ensembl	69_37n	1	known	missense	c.902	p.P301L	1.000	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like	-	no_errors	ZPBP2	HGNC	ENSG00000186075	67	0	0	72	217	75.09	-	-	-	T	38032947	C	T	38032947	3	4	237	1	0	0	0	0	1	0	0	0	18313	681	24	4	932	4	ZPBP2	17	38032947	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	4353022	38032947	43162263	74	18785										
ZPBP2	0	genome.wustl.edu	37	chr17	38033019	38033019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ccttacctatggagctaaatCttgcccacaaacttcaaaca	4	13	2	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	38033019	38033019	C	G	SNP	ZPBP2	ENST00000348931	human	ensembl	69_37n	1	known	missense	c.974	p.S325C	0.740	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like	-	no_errors	ZPBP2	HGNC	ENSG00000186075	80	0	0	84	215	71.91	-	-	-	G	38033019	C	G	38033019	3	3	237	1	0	0	0	0	1	0	0	0	18313	913	32	2	1004	2	ZPBP2	17	38033019	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	72	38033019	43162191	75	18786										
PPM1D	0	genome.wustl.edu	37	chr17	58740529	58740529	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gaaccacttgaagaaaattgCgctaaagccctgactttaag	8	9	0	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	17	58740529	58740529	C	A	SNP	PPM1D	ENST00000305921	human	ensembl	69_37n	1	known	nonsense	c.1434	p.C478*	0.999	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1D	HGNC	ENSG00000170836	35	0	0	30	8	21.05	-	-	-	A	58740529	C	A	58740529	4	1	237	1	0	0	0	0	0	1	0	0	12414	776	27	3	1456	3	PPM1D	17	58740529	Nonsense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	20707510	58740529	22454681	76	18787										
SS18	0	genome.wustl.edu	37	chr18	23658072	23658072	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agactgcatattttgattagAatctgctattgtagcaaggt	9	5	1	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	18	23658072	23658072	A	T	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	missense	c.199	p.S67T	1.000	pfam_SSXT	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	104	0	0	42	22	34.38	-	-	-	T	23658072	A	T	23658072	3	4	237	1	0	0	0	0	1	0	0	0	15266	246	9	5	1093	5	SS18	18	23658072	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09		23658072	54419176	77	18788										
HDHD2	0	genome.wustl.edu	37	chr18	44660972	44660972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agatgtgaatatttcatcttCagagatatcaaattccaatt	5	6	4	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	18	44660972	44660972	C	G	SNP	HDHD2	ENST00000300605	human	ensembl	69_37n	-1	known	missense	c.205	p.E69Q	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	-	no_errors	HDHD2	HGNC	ENSG00000167220	91	0	0	82	11	11.83	-	-	-	G	44660972	C	G	44660972	3	3	237	1	0	0	0	0	1	0	0	0	7074	835	29	2	594	2	HDHD2	18	44660972	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	21002900	44660972	33416276	78	18789										
PPP5C	0	genome.wustl.edu	37	chr19	46893337	46893337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ggggaacaaagcctcctacaTccacctccagggctctgacc	9	16	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	19	46893337	46893337	T	C	SNP	PPP5C	ENST00000012443	human	ensembl	69_37n	1	known	missense	c.1385	p.I462T	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485	30	0	0	28	15	34.88	-	-	-	C	46893337	T	C	46893337	3	2	237	1	0	0	0	0	1	0	0	0	12483	1435	50	5	1431	5	PPP5C	19	46893337	Missense_Mutation	SNP	T	TCGA-AC-A23C-01A-12D-A167-09		46893337	12235646	79	18790										
ZNF274	0	genome.wustl.edu	37	chr19	58724135	58724135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctgtgcataagaaaatccatAccggagagaggccctatgtg	11	9	0	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	19	58724135	58724135	A	G	SNP	ZNF274	ENST00000326804	human	ensembl	69_37n	1	known	missense	c.1585	p.T529A	1.000	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606	42	0	0	31	26	45.61	-	-	-	G	58724135	A	G	58724135	3	3	237	1	0	0	0	0	1	0	0	0	17905	391	14	5	1613	5	ZNF274	19	58724135	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	11830798	58724135	404848	80	18791										
ZNF544	0	genome.wustl.edu	37	chr19	58774007	58774007	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gctctaaccttctttcccatCacagaattcattctggagag	6	12	5	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	19	58774007	58774007	C	T	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.2035	p.H679Y	0.843	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	38	0	0	17	13	43.33	-	-	-	T	58774007	C	T	58774007	3	4	237	1	0	0	0	0	1	0	0	0	18073	826	29	2	2049	2	ZNF544	19	58774007	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	49872	58774007	354976	81	18792										
XKR7	0	genome.wustl.edu	37	chr20	30585069	30585069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	caccagtggcccgcaccttgCggacagaggggcctgtcatc	13	15	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	20	30585069	30585069	C	T	SNP	XKR7	ENST00000217299	human	ensembl	69_37n	1	known	missense	c.1549	p.R517W	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000101321	13	0	0	10	5	33.33	-	-	-	T	30585069	C	T	30585069	3	4	237	1	0	0	0	0	1	0	0	0	17533	759	27	1	1559	1	XKR7	20	30585069	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		30585069	32440451	82	18793										
CHD6	0	genome.wustl.edu	37	chr20	40049605	40049605	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtgggctccgtgagatgcaaTacctctggcctttcccccat	10	14	1	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	20	40049605	40049605	T	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.5670	p.V1890	0.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	88	0	0	76	10	11.63	-	-	-	G	40049605	T	G	40049605	2	3	237	1	0	0	0	0	0	0	0	1	3358	1393	49	5		5	CHD6	20	40049605	Silent	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	9464536	40049605	22975915	83	18794										
SLC9A8	0	genome.wustl.edu	37	chr20	48479578	48479578	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttggctctgcagcgctcggcActctcactggcttaatttct	9	13	3	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	20	48479578	48479578	A	T	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.874	p.T292S	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	63	0	0	81	10	10.99	-	-	-	T	48479578	A	T	48479578	3	4	237	1	0	0	0	0	1	0	0	0	14809	159	6	5	860	5	SLC9A8	20	48479578	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	8429973	48479578	14545942	84	18795										
TMPRSS6	0	genome.wustl.edu	37	chr22	37492106	37492106	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gggatttggagaatgaaccaGaagaagcaggtgaggggtcc	17	5	0	5			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	22	37492106	37492106	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	silent	c.429	p.F143	1.000	pirsf_Pept_S1A_matriptase-2,pfam_SEA	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	17	0	0	15	6	28.57	-	-	-	A	37492106	G	A	37492106	2	1	237	1	0	0	0	0	0	0	0	1	16346	933	33	2		2	TMPRSS6	22	37492106	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09		37492106	13812460	85	18796										
RBBP7	0	genome.wustl.edu	37	chrX	16863950	16863950	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	aagaaaaacattttaactcaCcatttgccatatctgcatga	4	9	2	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	16863950	16863950	C	A	SNP	RBBP7	ENST00000380087	human	ensembl	69_37n	-1	known	splice_site	c.1209+1	e11+1	1.000	-	-	-	no_errors	RBBP7	HGNC	ENSG00000102054	54	0	0	40	14	25.93	-	-	-	A	16863950	C	A	16863950	5	1	237	1	0	0	0	0	0	0	1	0	13187	521	18	4	75	4	RBBP7	23	16863950	Splice_Site	SNP	C	TCGA-AC-A23C-01A-12D-A167-09		16863950	138406610	86	18797										
TAB3	0	genome.wustl.edu	37	chrX	30873374	30873374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttcataaaaaatggattgtaGttgggagtagcagcaacaac	10	5	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	30873374	30873374	G	A	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	silent	c.408	p.N136	0.999	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	51	0	0	48	17	26.15	-	-	-	A	30873374	G	A	30873374	2	1	237	1	0	0	0	0	0	0	0	1	15589	1020	36	4		4	TAB3	23	30873374	Silent	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	14009424	30873374	124397186	87	18798										
FAM47A	0	genome.wustl.edu	37	chrX	34149096	34149096	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtccttcagcgtcctcccagAatccagcactttcagtatgt	7	14	2	1			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	34149096	34149096	A	G	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1300	p.S434P	0.005	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	24	0	0	35	12	25.53	-	-	-	G	34149096	A	G	34149096	3	3	237	1	0	0	0	0	1	0	0	0	5615	246	9	5	1079	5	FAM47A	23	34149096	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	3275722	34149096	121121464	88	18799										
USP51	0	genome.wustl.edu	37	chrX	55513916	55513916	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gcaggccacctgtaaagattTggtctatgatgcagttacag	11	8	1	2			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	55513916	55513916	T	C	SNP	USP51	ENST00000500968	human	ensembl	69_37n	-1	known	missense	c.1457	p.Q486R	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP51	HGNC	ENSG00000247746	47	0	0	37	13	26	-	-	-	C	55513916	T	C	55513916	3	2	237	1	0	0	0	0	1	0	0	0	17180	1812	63	5	682	5	USP51	23	55513916	Missense_Mutation	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	21364820	55513916	99756644	89	18800										
EDA2R	0	genome.wustl.edu	37	chrX	65824309	65824309	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ttcgtgcacgggatgcactcTtggtcctgcaggcctccaat	11	13	1	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	65824309	65824309	T	C	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	silent	c.306	p.Q102	1.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	52	0	0	27	11	28.95	-	-	-	C	65824309	T	C	65824309	2	2	237	1	0	0	0	0	0	0	0	1	4939	1606	56	5		5	EDA2R	23	65824309	Silent	SNP	T	TCGA-AC-A23C-01A-12D-A167-09	10310393	65824309	89446251	90	18801										
MED12	0	genome.wustl.edu	37	chrX	70351944	70351944	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	agatgaactccctcttggagAacatcgccaaggccacaatc	8	13	1	3			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	70351944	70351944	A	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.4141	p.N1381Y	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	38	0	0	30	4	11.76	-	-	-	T	70351944	A	T	70351944	3	4	237	1	0	0	0	0	1	0	0	0	9499	246	9	5	4259	5	MED12	23	70351944	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	4527635	70351944	84918616	91	18802										
TBX22	0	genome.wustl.edu	37	chrX	79279656	79279656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	tggtgccggtggattccaaaCgctataggtaatgggcccca	13	10	0	0			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	79279656	79279656	C	T	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.451	p.R151C	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	66	0	0	47	18	27.69	-	-	-	T	79279656	C	T	79279656	3	4	237	1	0	0	0	0	1	0	0	0	15753	536	19	1	461	1	TBX22	23	79279656	Missense_Mutation	SNP	C	TCGA-AC-A23C-01A-12D-A167-09	8927712	79279656	75990904	92	18803										
POF1B	0	genome.wustl.edu	37	chrX	84601036	84601036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	gtgatgatggcattgagcctGaggatggcacccctaagaca	13	9	0	5			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	84601036	84601036	G	C	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	missense	c.553	p.Q185E	0.997	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	105	0	0	63	12	16	-	-	-	C	84601036	G	C	84601036	3	2	237	1	0	0	0	0	1	0	0	0	12256	1299	45	2	1264	2	POF1B	23	84601036	Missense_Mutation	SNP	G	TCGA-AC-A23C-01A-12D-A167-09	5321380	84601036	70669524	93	18804										
FMR1	0	genome.wustl.edu	37	chrX	147007128	147007128	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.276595744680851	26	3.98428136434683e-07	3.10428849902534	3.39335180055402	2.94736842105263	0.192316886243639	0.764576889212516	18	ctgtaggttataataaagatAtaaatgaaagtgatgaagtt	9	1	0	4			TCGA-AC-A23C-01A-12D-A167-09	TCGA-AC-A23C-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91766158-e175-4270-bc01-8e853fc9f391	8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2	X	147007128	147007128	A	C	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.175	p.I59L	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	55	0	0	32	14	30.43	-	-	-	C	147007128	A	C	147007128	3	2	237	1	0	0	0	0	1	0	0	0	6006	449	16	5	185	5	FMR1	23	147007128	Missense_Mutation	SNP	A	TCGA-AC-A23C-01A-12D-A167-09	62406092	147007128	8263432	94	18805										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0	30	19	38.78	-	-	-	G	178952085	A	G	178952085	3	3	238	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AC-A23E-01A-11D-A159-09		178952085	19070345	1	18806										
SMAD5	0	genome.wustl.edu	37	chr5	135489806	135489807	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	ccttttggatctaagcaaaaAgaagtttgtatcaacccata							TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	5	135489806	135489807	AG	-	DEL	SMAD5	ENST00000545279	human	ensembl	69_37n	1	known	frame_shift_del	c.357_358	p.E120fs	1.000:1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD5	HGNC	ENSG00000113658	69	0	0	72	10	12.2	-	-	-	-	135489807	AG	-	135489806	7	5	238	1	0	1	0	1	0	0	0	0	14850	69	3	0	359	0	SMAD5	5	135489806	Frame_Shift_Del	DEL	AG	TCGA-AC-A23E-01A-11D-A159-09		135489806	45425454	2	18807										
RNF183	0	genome.wustl.edu	37	chr9	116060076	116060076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaggccgtgtctgggggcGgcccagtctggcccccaggc	17	15	2	1			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	9	116060076	116060076	G	A	SNP	RNF183	ENST00000297894	human	ensembl	69_37n	-1	known	missense	c.389	p.P130L	0.002	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF183	HGNC	ENSG00000165188	24	0	0	28	6	17.65	-	-	-	A	116060076	G	A	116060076	3	1	238	1	0	0	0	0	1	0	0	0	13553	1116	39	1	193	1	RNF183	9	116060076	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09		116060076	25153355	3	18808										
SFMBT2	0	genome.wustl.edu	37	chr10	7409820	7409820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacttccaatttcattcctGgctggaagttgctctgaatg	8	11	2	1			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	10	7409820	7409820	G	C	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.227	p.P76R	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	42	0	0	48	11	18.64	-	-	-	C	7409820	G	C	7409820	3	2	238	1	0	0	0	0	1	0	0	0	14246	1348	47	4	2529	4	SFMBT2	10	7409820	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09		7409820	128124927	4	18809										
COMMD9	0	genome.wustl.edu	37	chr11	36297762	36297762	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttttgatatccactctccaGtccagatcgaccaggcgtgg	10	12	1	2			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	11	36297762	36297762	G	A	SNP	COMMD9	ENST00000263401	human	ensembl	69_37n	-1	known	silent	c.381	p.D127	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442	36	0	0	34	8	19.05	-	-	-	A	36297762	G	A	36297762	2	1	238	1	0	0	0	0	0	0	0	1	3753	1020	36	4		4	COMMD9	11	36297762	Silent	SNP	G	TCGA-AC-A23E-01A-11D-A159-09		36297762	98708754	5	18810										
C11orf84	0	genome.wustl.edu	37	chr11	63585595	63585595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagagctgagcagccgtcccCacccaactcaggtagttggt	12	13	1	2			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	11	63585595	63585595	C	T	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	1	known	missense	c.446	p.P149L	0.001	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	40	0	0	37	9	19.57	-	-	-	T	63585595	C	T	63585595	3	4	238	1	0	0	0	0	1	0	0	0	1678	594	21	4	452	4	C11orf84	11	63585595	Missense_Mutation	SNP	C	TCGA-AC-A23E-01A-11D-A159-09	27287833	63585595	71420921	6	18811										
OR6C65	0	genome.wustl.edu	37	chr12	55794527	55794527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcttagaaatttcatttaCgacagtcttcattcctagat	4	8	4	2			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	12	55794527	55794527	C	T	SNP	OR6C65	ENST00000379665	human	ensembl	69_37n	1	known	missense	c.215	p.T72M	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C65	HGNC	ENSG00000205328	67	0	0	49	11	18.33	-	-	-	T	55794527	C	T	55794527	3	4	238	1	0	0	0	0	1	0	0	0	11268	536	19	1	217	1	OR6C65	12	55794527	Missense_Mutation	SNP	C	TCGA-AC-A23E-01A-11D-A159-09		55794527	78057368	7	18812										
SULT1A4	0	genome.wustl.edu	37	chr16	29472811	29472811	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggcccctgcagagcttccaAgcccgacctgatgacctgct	11	16	0	3			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	10	0	0	1	3	75	-	-	-	G	29472811	A	G	29472811	2	3	238	1	0	0	0	0	0	0	0	1	15466	69	3	5		5	SULT1A4	16	29472811	Silent	SNP	A	TCGA-AC-A23E-01A-11D-A159-09		29472811	60881942	8	18813										
MAP2K4	0	genome.wustl.edu	37	chr17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	ttgcttcccaatattttaacAgagagagactgagaacacac							TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	11984671	11984672	AG	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site_del	c.252-2_252-1	e4-1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	32	0	0	15	12	44.44	-	-	-	-	11984672	AG	-	11984671	8	5	238	1	0	1	0	1	0	0	1	0	9310	202	7	0	227	0	MAP2K4	17	11984671	Splice_Site	DEL	AG	TCGA-AC-A23E-01A-11D-A159-09		11984671	69210539	9	18814										
NCOR1	0	genome.wustl.edu	37	chr17	16012112	16012112	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgagataccttcgctgtcttCtggattttcttcttcattgg	8	9	5	1			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	16012112	16012112	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.2170	p.E724*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	116	0	0	31	38	55.07	-	-	-	A	16012112	C	A	16012112	4	1	238	1	0	0	0	0	0	1	0	0	10307	922	32	2	5264	2	NCOR1	17	16012112	Nonsense_Mutation	SNP	C	TCGA-AC-A23E-01A-11D-A159-09	4027441	16012112	65183098	10	18815										
C17orf66	0	genome.wustl.edu	37	chr17	34182281	34182281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttaactcttctgggttctcaGgctctttctggaaccttgtg	9	10	5	0			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	34182281	34182281	G	A	SNP	C17orf66	ENST00000311880	human	ensembl	69_37n	-1	known	missense	c.1499	p.P500L	0.045	NULL	superfamily_ARM-type_fold	-	no_errors	C17orf66	HGNC	ENSG00000172653	94	0	0	58	11	15.94	-	-	-	A	34182281	G	A	34182281	3	1	238	1	0	0	0	0	1	0	0	0	1889	1000	35	4	217	4	C17orf66	17	34182281	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09	18170169	34182281	47012929	11	18816										
EME1	0	genome.wustl.edu	37	chr17	48453257	48453257	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagcaccctgagaagacagGaaagaaagaatgcagcactg	11	8	0	4			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	48453257	48453257	G	C	SNP	EME1	ENST00000393271	human	ensembl	69_37n	1	known	missense	c.688	p.E230Q	0.001	NULL	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920	37	0	0	24	6	19.35	-	-	-	C	48453257	G	C	48453257	3	2	238	1	0	0	0	0	1	0	0	0	5125	1175	41	2	690	2	EME1	17	48453257	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09	14270976	48453257	32741953	12	18817										
MRPL38	0	genome.wustl.edu	37	chr17	73897305	73897305	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctagtgagtagcaacgtcCacaaggagccctcttctgcc	10	13	2	1			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	73897305	73897305	C	T	SNP	MRPL38	ENST00000309352	human	ensembl	69_37n	-1	known	nonsense	c.641	p.W214*	1.000	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	MRPL38	HGNC	ENSG00000204316	27	0	0	28	7	20	-	-	-	T	73897305	C	T	73897305	4	4	238	1	0	0	0	0	0	1	0	0	9873	595	21	4	521	4	MRPL38	17	73897305	Nonsense_Mutation	SNP	C	TCGA-AC-A23E-01A-11D-A159-09	25444048	73897305	7297905	13	18818										
ZNF560	0	genome.wustl.edu	37	chr19	9577375	9577375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatacgtcctgaggatgtacGgaaggccttcccacattcct	9	12	0	1			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	19	9577375	9577375	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.2248	p.R750C	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	70	0	0	62	13	17.33	-	-	-	A	9577375	G	A	9577375	3	1	238	1	0	0	0	0	1	0	0	0	18087	1116	39	1	128	1	ZNF560	19	9577375	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09		9577375	49551608	14	18819										
CLCN4	0	genome.wustl.edu	37	chrX	10180564	10180564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgcgatagcgggcaggatgGtgggaattggcgtggagcag	21	6	0	0			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	X	10180564	10180564	G	T	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	missense	c.1447	p.V483L	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	31	0	0	30	5	14.29	-	-	-	T	10180564	G	T	10180564	3	4	238	1	0	0	0	0	1	0	0	0	3495	1261	44	4	1477	4	CLCN4	23	10180564	Missense_Mutation	SNP	G	TCGA-AC-A23E-01A-11D-A159-09		10180564	145089996	15	18820										
FTHL17	0	genome.wustl.edu	37	chrX	31089761	31089761	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttcttctccaggtggaaggCggactccatggccacgagcc	13	13	2	0			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	X	31089761	31089761	C	A	SNP	FTHL17	ENST00000359202	human	ensembl	69_37n	-1	known	missense	c.310	p.A104S	0.968	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTHL17	HGNC	ENSG00000132446	25	0	0	29	22	43.14	-	-	-	A	31089761	C	A	31089761	3	1	238	1	0	0	0	0	1	0	0	0	6132	768	27	3	245	3	FTHL17	23	31089761	Missense_Mutation	SNP	C	TCGA-AC-A23E-01A-11D-A159-09	20909197	31089761	124180799	16	18821										
BSDC1	0	genome.wustl.edu	37	chr1	32849611	32849611	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ccttccgtctgtatagagaaCgggcagaggaagcaagcgcc	13	11	1	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	1	32849611	32849611	C	G	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	silent	c.228	p.P76	0.001	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	51	0	0	39	9	18.75	-	-	-	G	32849611	C	G	32849611	2	3	239	1	0	0	0	0	0	0	0	1	1536	523	19	3		3	BSDC1	1	32849611	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		32849611	216401010	1	18822										
REG1B	0	genome.wustl.edu	37	chr2	79312674	79312674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	tagcactgctcggggatccaGtgtcccaggacttgtaggag	14	10	0	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	2	79312674	79312674	G	T	SNP	REG1B	ENST00000305089	human	ensembl	69_37n	-1	known	missense	c.377	p.T126N	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	-	no_errors	REG1B	HGNC	ENSG00000172023	67	0	0	33	6	15.38	-	-	-	T	79312674	G	T	79312674	3	4	239	1	0	0	0	0	1	0	0	0	13294	1029	36	4	131	4	REG1B	2	79312674	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09		79312674	163886699	2	18823										
PLXNA1	0	genome.wustl.edu	37	chr3	126737227	126737227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ctgccattgtgggcattggcGgaggcgggggtctcctgctg	18	10	1	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	3	126737227	126737227	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.3751	p.G1251R	0.998	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	134	0	0	46	13	22.03	-	-	-	A	126737227	G	A	126737227	3	1	239	1	0	0	0	0	1	0	0	0	12193	1117	39	1	3825	1	PLXNA1	3	126737227	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09		126737227	71285203	3	18824										
ADCY2	0	genome.wustl.edu	37	chr5	7520913	7520913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ctgcccttcaacatgcgagaCgccatcattgccagcgtcct	8	16	2	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	5	7520913	7520913	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.471	p.D157	0.346	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	124	0	0	81	10	10.99	-	-	-	T	7520913	C	T	7520913	2	4	239	1	0	0	0	0	0	0	0	1	294	535	19	1		1	ADCY2	5	7520913	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		7520913	173394347	4	18825										
ODZ2	0	genome.wustl.edu	37	chr5	167517747	167517747	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	atgatggaaaagacaaagagAtggtttccttcaatactgtt	9	5	1	3			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	5	167517747	167517747	A	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.1684	p.M562L	0.998	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	181	0	0	125	20	13.79	-	-	-	T	167517747	A	T	167517747	3	4	239	1	0	0	0	0	1	0	0	0	10908	333	12	5	1714	5	ODZ2	5	167517747	Missense_Mutation	SNP	A	TCGA-AC-A23G-01A-11D-A20S-09	159996834	167517747	13397513	5	18826										
OR2J3	0	genome.wustl.edu	37	chr6	29080484	29080484	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	catcaggaaattctcaagatCaaggcaagttcattgccctc	7	11	4	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	6	29080484	29080484	C	A	SNP	OR2J3	ENST00000377169	human	ensembl	69_37n	1	known	missense	c.817	p.Q273K	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701	98	0	0	47	16	25.4	-	-	-	A	29080484	C	A	29080484	3	1	239	1	0	0	0	0	1	0	0	0	11077	827	29	2	819	2	OR2J3	6	29080484	Missense_Mutation	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		29080484	142034583	6	18827										
PDE1C	0	genome.wustl.edu	37	chr7	31862802	31862802	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ttgttgatcggggcacttccCtctgaaccagaggtcttgac	11	11	2	4			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	7	31862802	31862802	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	silent	c.1467	p.E489	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	72	0	0	60	7	10.45	-	-	-	T	31862802	C	T	31862802	2	4	239	1	0	0	0	0	0	0	0	1	11708	680	24	4		4	PDE1C	7	31862802	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		31862802	127275861	7	18828										
MLL5	0	genome.wustl.edu	37	chr7	104753375	104753375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ccccctccgccgccaccttcCagtgttttggcttctgggca	9	18	1	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	7	104753375	104753375	C	T	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	silent	c.5172	p.S1724	0.330	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	90	0	0	37	5	11.9	-	-	-	T	104753375	C	T	104753375	2	4	239	1	0	0	0	0	0	0	0	1	9695	581	21	4		4	MLL5	7	104753375	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09	72890573	104753375	54385288	8	18829										
PDE7A	0	genome.wustl.edu	37	chr8	66753615	66753615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	gcggcgattacctgagagagCtgccggggattggggcagcc	18	10	0	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	8	66753615	66753615	C	T	SNP	PDE7A	ENST00000401827	human	ensembl	69_37n	-1	known	silent	c.129	p.Q43	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7A	HGNC	ENSG00000205268	141	0	0	38	9	19.15	-	-	-	T	66753615	C	T	66753615	2	4	239	1	0	0	0	0	0	0	0	1	11724	796	28	4		4	PDE7A	8	66753615	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		66753615	79610407	9	18830										
C8orf33	0	genome.wustl.edu	37	chr8	146278050	146278050	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	cgtcccgcggagcccggcttCccggcccagtttccagcgcc	12	20	0	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	8	146278050	146278050	C	A	SNP	C8orf33	ENST00000331434	human	ensembl	69_37n	1	known	missense	c.85	p.P29T	0.001	NULL	NULL	-	no_errors	C8orf33	HGNC	ENSG00000182307	181	0	0	63	11	14.86	-	-	-	A	146278050	C	A	146278050	3	1	239	1	0	0	0	0	1	0	0	0	2445	855	30	2	91	2	C8orf33	8	146278050	Missense_Mutation	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09	79524435	146278050	85972	10	18831										
LRRK2	0	genome.wustl.edu	37	chr12	40651068	40651068	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	agttaatttcagaaaaatacTgttatcaaaaggaatacacc	5	6	2	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	12	40651068	40651068	T	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.1307	p.L436Q	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	38	0	0	22	5	18.52	-	-	-	A	40651068	T	A	40651068	3	1	239	1	0	0	0	0	1	0	0	0	9099	1580	55	5	1353	5	LRRK2	12	40651068	Missense_Mutation	SNP	T	TCGA-AC-A23G-01A-11D-A20S-09		40651068	93200827	11	18832										
ESPL1	0	genome.wustl.edu	37	chr12	53663151	53663151	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	tgctccccaggactatgaggCcgtggctcggggcagctttt	14	12	0	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	12	53663151	53663151	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.425	p.A142D	0.672	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	36	0	0	25	5	16.67	-	-	-	A	53663151	C	A	53663151	3	1	239	1	0	0	0	0	1	0	0	0	5290	739	26	4	431	4	ESPL1	12	53663151	Missense_Mutation	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09	13012083	53663151	80188744	12	18833										
PPTC7	0	genome.wustl.edu	37	chr12	110989635	110989635	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	gcagcaactcacagtagcttGtggtgagaattccaatggga	12	8	1	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	12	110989635	110989635	G	T	SNP	PPTC7	ENST00000354300	human	ensembl	69_37n	-1	known	missense	c.362	p.T121K	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPTC7	HGNC	ENSG00000196850	63	0	0	19	3	13.64	-	-	-	T	110989635	G	T	110989635	3	4	239	1	0	0	0	0	1	0	0	0	12490	1377	48	4	572	4	PPTC7	12	110989635	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	57326484	110989635	22862260	13	18834										
OASL	0	genome.wustl.edu	37	chr12	121461911	121461911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	acccttctgccacgttgaggGtggggtcggccggatccagg	16	12	1	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	12	121461911	121461911	G	C	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	missense	c.929	p.T310S	1.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	79	0	0	24	8	25	-	-	-	C	121461911	G	C	121461911	3	2	239	1	0	0	0	0	1	0	0	0	10875	1261	44	4	623	4	OASL	12	121461911	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	10472276	121461911	12389984	14	18835										
HECTD1	0	genome.wustl.edu	37	chr14	31614023	31614023	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	gatgacatacttgtctatttGtatgaagttcccaagatgac	8	7	1	4			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	14	31614023	31614023	G	T	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.2621	p.T874K	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	49	0	0	27	3	10	-	-	-	T	31614023	G	T	31614023	3	4	239	1	0	0	0	0	1	0	0	0	7090	1377	48	4	5323	4	HECTD1	14	31614023	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09		31614023	75735517	15	18836										
CDH1	0	genome.wustl.edu	37	chr16	68846065	68846065	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ctacgtataccctggtggttCaagctgctgaccttcaaggt	10	11	2	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	16	68846065	68846065	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1036	p.Q346*	0.979	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	134	0	0	64	14	17.95	-	-	-	T	68846065	C	T	68846065	4	4	239	1	0	0	0	0	0	1	0	0	3124	827	29	2	1066	2	CDH1	16	68846065	Nonsense_Mutation	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		68846065	21508688	16	18837										
CRISPLD2	0	genome.wustl.edu	37	chr16	84888373	84888373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	agccccctacaagaatggccGgccctgctctgagtgcccac	10	17	1	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	16	84888373	84888373	G	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	69_37n	1	known	missense	c.647	p.R216Q	0.977	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196	66	0	0	23	4	14.81	-	-	-	A	84888373	G	A	84888373	3	1	239	1	0	0	0	0	1	0	0	0	3913	1116	39	1	665	1	CRISPLD2	16	84888373	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	16042308	84888373	5466380	17	18838										
P4HB	0	genome.wustl.edu	37	chr17	79816926	79816926	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	caagtggacagagaacccggCctgaggaacgggatccctcc	13	13	0	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	17	79816926	79816926	C	T	SNP	P4HB	ENST00000472244	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	P4HB	HGNC	ENSG00000185624	8	0	0	2	9	81.82	-	-	-	T	79816926	C	T	79816926	1	4	239	0	1	0	0	0	0	0	0	0	11432	754	26	4		4	P4HB	17	79816926	RNA	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		79816926	1378284	18	18839										
FN3K	0	genome.wustl.edu	37	chr17	80699260	80699260	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	acggtgacgtgctgcggcttCatcccgcaggtgagtgcctg	15	12	1	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	17	80699260	80699260	C	T	SNP	FN3K	ENST00000300784	human	ensembl	69_37n	1	known	silent	c.459	p.F153	0.999	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3K	HGNC	ENSG00000167363	46	0	0	28	9	24.32	-	-	-	T	80699260	C	T	80699260	2	4	239	1	0	0	0	0	0	0	0	1	6009	825	29	2		2	FN3K	17	80699260	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09	882334	80699260	495950	19	18840										
GLT25D1	0	genome.wustl.edu	37	chr19	17688077	17688077	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ccggacaagatgggcttcgaCgaggtgagctgggccttccc	15	12	0	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	19	17688077	17688077	C	T	SNP	GLT25D1	ENST00000252599	human	ensembl	69_37n	1	known	silent	c.1023	p.D341	0.990	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	GLT25D1	HGNC	ENSG00000130309	123	0	0	58	16	21.62	-	-	-	T	17688077	C	T	17688077	2	4	239	1	0	0	0	0	0	0	0	1	6518	535	19	1		1	GLT25D1	19	17688077	Silent	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09		17688077	41440906	20	18841										
PLA2G4C	0	genome.wustl.edu	37	chr19	48558217	48558217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	aggatgtagcagctggcgggGgccttggaccacaaatccag	15	10	0	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	19	48558217	48558217	G	A	SNP	PLA2G4C	ENST00000413144	human	ensembl	69_37n	-1	known	silent	c.1347	p.A449	0.558	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4C	HGNC	ENSG00000105499	49	0	0	33	4	10.81	-	-	-	A	48558217	G	A	48558217	2	1	239	1	0	0	0	0	0	0	0	1	12077	1219	43	4		4	PLA2G4C	19	48558217	Silent	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	30870140	48558217	10570766	21	18842										
ABHD12	0	genome.wustl.edu	37	chr20	25304030	25304030	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	tgtgattcaaaccttgatccTgtggttttttcaaatcaatg	7	7	3	2			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	20	25304030	25304030	T	C	SNP	ABHD12	ENST00000376542	human	ensembl	69_37n	-1	known	missense	c.353	p.Q118R	1.000	NULL	pfam_AB_hydrolase_1,pfam_AB_hydrolase_3	-	no_errors	ABHD12	HGNC	ENSG00000100997	52	0	0	34	7	17.07	-	-	-	C	25304030	T	C	25304030	3	2	239	1	0	0	0	0	1	0	0	0	76	1580	55	5	949	5	ABHD12	20	25304030	Missense_Mutation	SNP	T	TCGA-AC-A23G-01A-11D-A20S-09		25304030	37721490	22	18843										
TRPC4AP	0	genome.wustl.edu	37	chr20	33603886	33603886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	tgcttcctccaaatcagtttGtcaaacaaattattaagtcc	4	10	2	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	20	33603886	33603886	G	T	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	missense	c.1275	p.D425E	1.000	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	59	0	0	36	4	10	-	-	-	T	33603886	G	T	33603886	3	4	239	1	0	0	0	0	1	0	0	0	16677	1368	48	4	1158	4	TRPC4AP	20	33603886	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	8299856	33603886	29421634	23	18844										
RIMBP3	0	genome.wustl.edu	37	chr22	20456765	20456765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ctccatctcagccactaggcGcccggggatattgcccactt	9	16	1	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	22	20456765	20456765	G	A	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	missense	c.4537	p.R1513C	0.941	superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	56	0	0	17	2	10.53	-	-	-	A	20456765	G	A	20456765	3	1	239	1	0	0	0	0	1	0	0	0	13448	1087	38	1	386	1	RIMBP3	22	20456765	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09		20456765	30847801	24	18845										
PRAME	0	genome.wustl.edu	37	chr22	22895259	22895259	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ctgtggtgcagaagccatctGcccagacctctgggaagacc	12	13	2	3			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	22	22895259	22895259	G	T	SNP	PRAME	ENST00000442481	human	ensembl	69_37n	-1	known	silent	c.135	p.G45	0.000	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	66	0	0	31	4	11.43	-	-	-	T	22895259	G	T	22895259	2	4	239	1	0	0	0	0	0	0	0	1	12501	1334	46	4		4	PRAME	22	22895259	Silent	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	2438494	22895259	28409307	25	18846										
DMD	0	genome.wustl.edu	37	chrX	32407759	32407759	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ttggctggtttctggaataaTcgaaacttcatggagacatc	10	7	2	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	X	32407759	32407759	T	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.4377	p.R1459	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	54	0	0	34	6	15	-	-	-	A	32407759	T	A	32407759	2	1	239	1	0	0	0	0	0	0	0	1	4616	1422	50	5		5	DMD	23	32407759	Silent	SNP	T	TCGA-AC-A23G-01A-11D-A20S-09		32407759	122862801	26	18847										
CHST7	0	genome.wustl.edu	37	chrX	46433865	46433865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	tcttccgctgcgacttctccGtgctgcggctgtacgcgccg	12	16	2	0			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	X	46433865	46433865	G	A	SNP	CHST7	ENST00000276055	human	ensembl	69_37n	1	known	missense	c.499	p.V167M	0.999	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST7	HGNC	ENSG00000147119	103	0	0	16	5	23.81	-	-	-	A	46433865	G	A	46433865	3	1	239	1	0	0	0	0	1	0	0	0	3438	1145	40	1	501	1	CHST7	23	46433865	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	14026106	46433865	108836695	27	18848										
GRIA3	0	genome.wustl.edu	37	chrX	122536848	122536848	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	ttttccctttctaccaggtgCaagtacaaggaatgactgga	9	9	1	1			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	X	122536848	122536848	C	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.1084	p.Q362K	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	76	0	0	43	6	12.24	-	-	-	A	122536848	C	A	122536848	3	1	239	1	0	0	0	0	1	0	0	0	6820	711	25	4	1114	4	GRIA3	23	122536848	Missense_Mutation	SNP	C	TCGA-AC-A23G-01A-11D-A20S-09	76102983	122536848	32733712	28	18849										
GRIA3	0	genome.wustl.edu	37	chrX	122616872	122616872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.871886716160037	1.10304054054054	0	1.26061776061776	0.4	0.991179622791967	0	gagaaggctacaacgtgtatGgaacagagagtgttaagatc	13	5	0	3			TCGA-AC-A23G-01A-11D-A20S-09	TCGA-AC-A23G-11A-12D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35bed911-f606-404f-8422-6d0ac1b740db	dd7c759d-25e5-413f-8504-9350c5aaffa2	X	122616872	122616872	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.2662	p.G888R	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	161	1	0.61	98	11	10	-	-	-	A	122616872	G	A	122616872	3	1	239	1	0	0	0	0	1	0	0	0	6820	1349	47	4	2839	4	GRIA3	23	122616872	Missense_Mutation	SNP	G	TCGA-AC-A23G-01A-11D-A20S-09	80024	122616872	32653688	29	18850										
TAS1R3	0	genome.wustl.edu	37	chr1	1267309	1267309	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagttcttcagcttcttcctCatgccccaggtgggcgcccc	9	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	1267309	1267309	C	T	SNP	TAS1R3	ENST00000339381	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.998	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	8	0	0	9	7	43.75	-	-	-	T	1267309	C	T	1267309	2	4	240	1	0	0	0	0	0	0	0	1	15656	813	29	2		2	TAS1R3	1	1267309	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		1267309	247983312	1	18851										
CCNL2	0	genome.wustl.edu	37	chr1	1325714	1325714	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcttcgatagcgtgctttCttttttccacttcaccctcc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	1325714	1325714	C	-	DEL	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	frame_shift_del	c.902	p.R301fs	0.803	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	70	0	0	63	14	16.67	-	-	-	-	1325714	C	-	1325714	7	5	240	1	0	1	0	1	0	0	0	0	2961	913	32	0	676	0	CCNL2	1	1325714	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	58405	1325714	247924907	2	18852										
MRPL20	0	genome.wustl.edu	37	chr1	1337464	1337464	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaatacagcaacagtcctCagtggtactgcaccactctg	7	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	1337464	1337464	C	G	SNP	MRPL20	ENST00000344843	human	ensembl	69_37n	-1	known	nonstop	c.449	p.*150S	0.948	NULL	pfam_Ribosomal_L20,prints_Ribosomal_L20,tigrfam_Ribosomal_L20	-	no_errors	MRPL20	HGNC	ENSG00000242485	34	0	0	37	12	24.49	-	-	-	G	1337464	C	G	1337464	4	3	240	1	0	0	0	0	0	0	0	0	9858	837	29	2	4	2	MRPL20	1	1337464	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11750	1337464	247913157	3	18853										
MIB2	0	genome.wustl.edu	37	chr1	1560701	1560701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagcgcagggtgagtgctGacagccagcccttccagcac	13	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	1560701	1560701	G	A	SNP	MIB2	ENST00000505820	human	ensembl	69_37n	1	known	missense	c.1102	p.D368N	0.971	NULL	pfam_Mib_Herc2,pfam_Ankyrin_rpt,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB2	HGNC	ENSG00000197530	25	0	0	21	9	30	-	-	-	A	1560701	G	A	1560701	3	1	240	1	0	0	0	0	1	0	0	0	9638	1290	45	2	1128	2	MIB2	1	1560701	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	223237	1560701	247689920	4	18854										
MMEL1	0	genome.wustl.edu	37	chr1	2541172	2541172	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgtatcttgagttggtctCagggatcacgtggcgccgca	14	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	2541172	2541172	C	G	SNP	MMEL1	ENST00000378412	human	ensembl	69_37n	-1	known	missense	c.391	p.E131Q	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606	34	0	0	27	12	30.77	-	-	-	G	2541172	C	G	2541172	3	3	240	1	0	0	0	0	1	0	0	0	9717	835	29	2	2028	2	MMEL1	1	2541172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	980471	2541172	246709449	5	18855										
TPRG1L	0	genome.wustl.edu	37	chr1	3542023	3542023	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggcagtggaggagatccgCgtggtggtgcggcccgtgga	20	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	3542023	3542023	C	T	SNP	TPRG1L	ENST00000378344	human	ensembl	69_37n	1	known	silent	c.237	p.R79	0.779	pfam_Inositol_phosphatase	pfam_Inositol_phosphatase	-	no_errors	TPRG1L	HGNC	ENSG00000158109	24	0	0	5	4	44.44	-	-	-	T	3542023	C	T	3542023	2	4	240	1	0	0	0	0	0	0	0	1	16515	755	27	1		1	TPRG1L	1	3542023	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1000851	3542023	245708598	6	18856										
AJAP1	0	genome.wustl.edu	37	chr1	4832432	4832432	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacctcacggacttcccctCggcccgggtgcccagcagcc	11	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	4832432	4832432	C	G	SNP	AJAP1	ENST00000378190	human	ensembl	69_37n	1	known	missense	c.1010	p.S337W	0.980	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	46	0	0	30	10	25	-	-	-	G	4832432	C	G	4832432	3	3	240	1	0	0	0	0	1	0	0	0	438	893	31	3	1024	3	AJAP1	1	4832432	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1290409	4832432	244418189	7	18857										
NPHP4	0	genome.wustl.edu	37	chr1	6029191	6029191	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagagtccggctggttgctGaagatccgaagaattccaaa	13	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	6029191	6029191	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	silent	c.408	p.F136	0.910	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	71	0	0	62	15	19.48	-	-	-	A	6029191	G	A	6029191	2	1	240	1	0	0	0	0	0	0	0	1	10653	1281	45	2		2	NPHP4	1	6029191	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1196759	6029191	243221430	8	18858										
NPHP4	0	genome.wustl.edu	37	chr1	6046245	6046245	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accggtccgtccagccacttGaggacacactggaatgccgt	11	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	6046245	6046245	G	C	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	silent	c.105	p.L35	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	107	0	0	80	32	28.57	-	-	-	C	6046245	G	C	6046245	2	2	240	1	0	0	0	0	0	0	0	1	10653	1277	45	2		2	NPHP4	1	6046245	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17054	6046245	243204376	9	18859										
CHD5	0	genome.wustl.edu	37	chr1	6211099	6211099	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggggagtcatactcctcttCttcttgcgcctcctcttgct	8	14	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	6211099	6211099	C	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.987	p.K329N	1.000	superfamily_Znf_FYVE_PHD	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	66	0	0	44	20	31.25	-	-	-	A	6211099	C	A	6211099	3	1	240	1	0	0	0	0	1	0	0	0	3357	912	32	2	5017	2	CHD5	1	6211099	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	164854	6211099	243039522	10	18860										
PLEKHG5	0	genome.wustl.edu	37	chr1	6556591	6556591	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccatgcaggcggggttctGacagcgcagtcccttctttt	12	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	6556591	6556591	G	A	SNP	PLEKHG5	ENST00000537245	human	ensembl	69_37n	-1	known	nonsense	c.112	p.Q38*	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	47	0	0	32	9	21.95	-	-	-	A	6556591	G	A	6556591	4	1	240	1	0	0	0	0	0	1	0	0	12147	1299	45	2	3229	2	PLEKHG5	1	6556591	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	345492	6556591	242694030	11	18861										
DNAJC11	0	genome.wustl.edu	37	chr1	6697333	6697333	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtcacgtcaatcaccttCaccttctcgctcttcctgct	4	17	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	6697333	6697333	C	T	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	silent	c.1449	p.V483	1.000	pfam_DnaJ-like_C11_C	pfam_DnaJ-like_C11_C,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC11	HGNC	ENSG00000007923	122	1	0.81	96	32	25	-	-	-	T	6697333	C	T	6697333	2	4	240	1	0	0	0	0	0	0	0	1	4665	813	29	2		2	DNAJC11	1	6697333	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140742	6697333	242553288	12	18862										
SLC25A33	0	genome.wustl.edu	37	chr1	9613784	9613784	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccggacagtctactatcctCaggttcatctggggaccatt	9	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	9613784	9613784	C	T	SNP	SLC25A33	ENST00000302692	human	ensembl	69_37n	1	known	nonsense	c.157	p.Q53*	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A33	HGNC	ENSG00000171612	112	0	0	68	25	26.88	-	-	-	T	9613784	C	T	9613784	4	4	240	1	0	0	0	0	0	1	0	0	14586	827	29	2	163	2	SLC25A33	1	9613784	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2916451	9613784	239636837	13	18863										
UBE4B	0	genome.wustl.edu	37	chr1	10163031	10163031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctcgggccctgaagtgtCtgaagagcaggccttacagc	12	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10163031	10163031	C	G	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.461	p.S154C	0.994	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	59	0	0	22	32	59.26	-	-	-	G	10163031	C	G	10163031	3	3	240	1	0	0	0	0	1	0	0	0	16980	913	32	2	479	2	UBE4B	1	10163031	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	549247	10163031	239087590	14	18864										
KIF1B	0	genome.wustl.edu	37	chr1	10425640	10425640	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgccatcacacctagcgaGagcagtggctatgattcagg	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10425640	10425640	G	C	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.4548	p.E1516D	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	81	0	0	59	17	22.37	-	-	-	C	10425640	G	C	10425640	3	2	240	1	0	0	0	0	1	0	0	0	8336	933	33	2	6195	2	KIF1B	1	10425640	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	262609	10425640	238824981	15	18865										
PGD	0	genome.wustl.edu	37	chr1	10468137	10468137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctttacacaggccccacatCaagaccatcttccaaggcat	5	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10468137	10468137	C	G	SNP	PGD	ENST00000270776	human	ensembl	69_37n	1	known	missense	c.459	p.I153M	1.000	pfam_6PGDH_NADP-bd,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657	106	0	0	95	18	15.93	-	-	-	G	10468137	C	G	10468137	3	3	240	1	0	0	0	0	1	0	0	0	11861	816	29	2	481	2	PGD	1	10468137	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	42497	10468137	238782484	16	18866										
DFFA	0	genome.wustl.edu	37	chr1	10523142	10523142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgactagataagctcagCtctggagcctgcttctccct	8	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10523142	10523142	C	A	SNP	DFFA	ENST00000377038	human	ensembl	69_37n	-1	known	missense	c.756	p.E252D	1.000	pfam_DNA_fragmentation_C,pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_C,pfam_CAD,smart_CAD,pirsf_DNA_fragmentation_factor_asu,pfscan_CAD	-	no_errors	DFFA	HGNC	ENSG00000160049	62	0	0	62	12	16.22	-	-	-	A	10523142	C	A	10523142	3	1	240	1	0	0	0	0	1	0	0	0	4488	796	28	4	271	4	DFFA	1	10523142	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55005	10523142	238727479	17	18867										
DFFA	0	genome.wustl.edu	37	chr1	10527263	10527263	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacctggaggtcctcctctGataggaggatgatgctggac	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10527263	10527263	G	A	SNP	DFFA	ENST00000377038	human	ensembl	69_37n	-1	known	missense	c.425	p.S142L	0.982	pfam_DNA_fragmentation_C,pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_C,pfam_CAD,smart_CAD,pirsf_DNA_fragmentation_factor_asu,pfscan_CAD	-	no_errors	DFFA	HGNC	ENSG00000160049	96	0	0	86	32	27.12	-	-	-	A	10527263	G	A	10527263	3	1	240	1	0	0	0	0	1	0	0	0	4488	1294	45	2	610	2	DFFA	1	10527263	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4121	10527263	238723358	18	18868										
CASZ1	0	genome.wustl.edu	37	chr1	10714483	10714483	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctcccgcttacctgcagtGgaagtgcgtggtcttctgtc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	10714483	10714483	G	-	DEL	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	frame_shift_del	c.1831	p.H611fs	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	64	0	0	47	34	41.46	-	-	-	-	10714483	G	-	10714483	7	5	240	1	0	1	0	1	0	0	0	0	2710	1348	47	0	3500	0	CASZ1	1	10714483	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	187220	10714483	238536138	19	18869										
C1orf127	0	genome.wustl.edu	37	chr1	11008388	11008388	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggtgagaaaccagctcctCtgcagccagtgtggcccgcc	12	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	11008388	11008388	C	G	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.1804	p.E602Q	0.007	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	19	0	0	22	6	21.43	-	-	-	G	11008388	C	G	11008388	3	3	240	1	0	0	0	0	1	0	0	0	2013	922	32	2	671	2	C1orf127	1	11008388	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	293905	11008388	238242233	20	18870										
MTOR	0	genome.wustl.edu	37	chr1	11177099	11177099	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatacccaaccattgacatGaccgctaaagaacgggtata	7	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	11177099	11177099	G	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.6978	p.V2326	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	107	0	0	73	26	26.26	-	-	-	A	11177099	G	A	11177099	2	1	240	1	0	0	0	0	0	0	0	1	10026	1277	45	2		2	MTOR	1	11177099	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	168711	11177099	238073522	21	18871										
MTOR	0	genome.wustl.edu	37	chr1	11288917	11288917	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accatggacacagctgggtaGaactcatccagaggcaagtt	11	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	11288917	11288917	G	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.2838	p.F946	1.000	pfam_DUF3385_TOR,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	64	0	0	53	15	22.06	-	-	-	A	11288917	G	A	11288917	2	1	240	1	0	0	0	0	0	0	0	1	10026	933	33	2		2	MTOR	1	11288917	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	111818	11288917	237961704	22	18872										
MAD2L2	0	genome.wustl.edu	37	chr1	11736007	11736007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcagggttaggaagagatGagtctcagaacagccaaaca	11	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	11736007	11736007	G	A	SNP	MAD2L2	ENST00000376664	human	ensembl	69_37n	-1	known	missense	c.451	p.H151Y	0.000	pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L2	HGNC	ENSG00000116670	17	0	0	12	6	33.33	-	-	-	A	11736007	G	A	11736007	3	1	240	1	0	0	0	0	1	0	0	0	9217	1305	45	2		2	MAD2L2	1	11736007	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	447090	11736007	237514614	23	18873										
MTHFR	0	genome.wustl.edu	37	chr1	11860346	11860346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccactgcgtagttgaagcctCcctcctcctcttcccactgg	7	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	11860346	11860346	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.632	p.G211E	0.488	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	96	0	0	61	13	17.57	-	-	-	T	11860346	C	T	11860346	3	4	240	1	0	0	0	0	1	0	0	0	10003	855	30	2	1497	2	MTHFR	1	11860346	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	124339	11860346	237390275	24	18874										
MIIP	0	genome.wustl.edu	37	chr1	12082262	12082262	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccggtcctccgtgtggggCccaccagatgcctgtcgagg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	12082262	12082262	C	-	DEL	MIIP	ENST00000235332	human	ensembl	69_37n	1	known	frame_shift_del	c.225	p.P76fs	0.000	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691	15	0	0	12	8	36.36	-	-	-	-	12082262	C	-	12082262	7	5	240	1	0	1	0	1	0	0	0	0	9656	726	26	0	231	0	MIIP	1	12082262	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	221916	12082262	237168359	25	18875										
VPS13D	0	genome.wustl.edu	37	chr1	12414078	12414078	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatccagattatatgccctCaaacatattttctgacagtg	5	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	12414078	12414078	C	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	nonsense	c.9479	p.S3160*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	136	0	0	85	26	23.42	-	-	-	G	12414078	C	G	12414078	4	3	240	1	0	0	0	0	0	1	0	0	17289	838	29	2	9661	2	VPS13D	1	12414078	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	331816	12414078	236836543	26	18876										
VPS13D	0	genome.wustl.edu	37	chr1	12416568	12416568	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattctgctatgctgacaaaGagcagccaaacctgtgagta	9	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	12416568	12416568	G	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.9985	p.E3329Q	1.000	pfam_VPSAP	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	56	0	0	38	5	11.63	-	-	-	C	12416568	G	C	12416568	3	2	240	1	0	0	0	0	1	0	0	0	17289	943	33	2	10175	2	VPS13D	1	12416568	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2490	12416568	236834053	27	18877										
PRAMEF1	0	genome.wustl.edu	37	chr1	12856020	12856020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagatcttcaccccacttCgggctgagctgatgtgtaca	12	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	12856020	12856020	C	T	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	missense	c.1300	p.R434W	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	168	0	0	162	21	11.48	-	-	-	T	12856020	C	T	12856020	3	4	240	1	0	0	0	0	1	0	0	0	12502	875	31	1	1310	1	PRAMEF1	1	12856020	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	439452	12856020	236394601	28	18878										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939863	12939863	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcactgggatagatgcttCaagtctgattccaaaagcac	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	12939863	12939863	C	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.939	p.L313F	0.001	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	164	0	0	131	37	22.02	-	-	-	G	12939863	C	G	12939863	3	3	240	1	0	0	0	0	1	0	0	0	12517	825	29	2	501	2	PRAMEF4	1	12939863	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83843	12939863	236310758	29	18879										
PRAMEF13	0	genome.wustl.edu	37	chr1	13448422	13448422	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctccaagatgagggtttcGagagaggcagcaattttctc	11	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	13448422	13448422	G	C	SNP	PRAMEF13	ENST00000376132	human	ensembl	69_37n	-1	known	silent	c.1053	p.L351	0.002	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495	43	0	0	57	7	10.94	-	-	-	C	13448422	G	C	13448422	2	2	240	1	0	0	0	0	0	0	0	1	12506	1045	37	3		3	PRAMEF13	1	13448422	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	508559	13448422	235802199	30	18880										
PRDM2	0	genome.wustl.edu	37	chr1	14105857	14105857	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgaaaaggaggccttgaaGagccccagcctccagcagaa	13	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	14105857	14105857	G	C	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.1567	p.E523Q	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	43	0	0	32	15	31.91	-	-	-	C	14105857	G	C	14105857	3	2	240	1	0	0	0	0	1	0	0	0	12539	943	33	2	1593	2	PRDM2	1	14105857	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	657435	14105857	235144764	31	18881										
PRDM2	0	genome.wustl.edu	37	chr1	14108961	14108961	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaggtccaagcagaacgtCaagtttgcagcttcggtgaa	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	14108961	14108961	C	G	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	silent	c.4671	p.V1557	0.999	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	26	0	0	24	7	22.58	-	-	-	G	14108961	C	G	14108961	2	3	240	1	0	0	0	0	0	0	0	1	12539	813	29	2		2	PRDM2	1	14108961	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3104	14108961	235141660	32	18882										
CELA2A	0	genome.wustl.edu	37	chr1	15783251	15783251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactcccacggacacaccatGataaggacgctgctgctgtc	9	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	15783251	15783251	G	C	SNP	CELA2A	ENST00000359621	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.993	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2A	HGNC	ENSG00000142615	56	0	0	62	20	24.39	-	-	-	C	15783251	G	C	15783251	3	2	240	1	0	0	0	0	1	0	0	0	3240	1290	45	2	5	2	CELA2A	1	15783251	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1674290	15783251	233467370	33	18883										
RSC1A1	0	genome.wustl.edu	37	chr1	15987464	15987464	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacttttggttgttagcagTaaaccagcttcagaaaatac	8	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	15987464	15987464	T	C	SNP	RSC1A1	ENST00000345034	human	ensembl	69_37n	1	known	silent	c.1101	p.S367	0.999	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695	45	0	0	32	11	25.58	-	-	-	C	15987464	T	C	15987464	2	2	240	1	0	0	0	0	0	0	0	1	13784	1635	57	5		5	RSC1A1	1	15987464	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	204213	15987464	233263157	34	18884										
SPEN	0	genome.wustl.edu	37	chr1	16247410	16247410	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggccctggttctctacaatGaaattgaatatgcacaagca	8	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16247410	16247410	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.1681	p.E561K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	94	0	0	67	16	19.28	-	-	-	A	16247410	G	A	16247410	3	1	240	1	0	0	0	0	1	0	0	0	15129	1291	45	2	1715	2	SPEN	1	16247410	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	259946	16247410	233003211	35	18885										
SPEN	0	genome.wustl.edu	37	chr1	16254734	16254734	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgggaaacttaccaaggaGactactatgaatcacgatac	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16254734	16254734	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.1999	p.D667H	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	44	0	0	34	17	33.33	-	-	-	C	16254734	G	C	16254734	3	2	240	1	0	0	0	0	1	0	0	0	15129	942	33	2	2041	2	SPEN	1	16254734	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7324	16254734	232995887	36	18886										
ZBTB17	0	genome.wustl.edu	37	chr1	16269183	16269183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgtgggagcgcaggttgtCtacccggttgaagccacgcc	14	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16269183	16269183	C	G	SNP	ZBTB17	ENST00000375733	human	ensembl	69_37n	-1	known	missense	c.1879	p.D627H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	28	0	0	30	10	25	-	-	-	G	16269183	C	G	16269183	3	3	240	1	0	0	0	0	1	0	0	0	17623	913	32	2	544	2	ZBTB17	1	16269183	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14449	16269183	232981438	37	18887										
ZBTB17	0	genome.wustl.edu	37	chr1	16271073	16271073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagctcttcccgcactcctCgcagccgtagggcttcagag	11	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16271073	16271073	C	T	SNP	ZBTB17	ENST00000375733	human	ensembl	69_37n	-1	known	missense	c.1093	p.E365K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	24	0	0	23	7	23.33	-	-	-	T	16271073	C	T	16271073	3	4	240	1	0	0	0	0	1	0	0	0	17623	893	31	1	1350	1	ZBTB17	1	16271073	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1890	16271073	232979548	38	18888										
CLCNKA	0	genome.wustl.edu	37	chr1	16349139	16349139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagttggtggggctgcgtGagggcttctcaggggaccct	19	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16349139	16349139	G	A	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	missense	c.25	p.E9K	0.799	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	48	0	0	64	10	13.51	-	-	-	A	16349139	G	A	16349139	3	1	240	1	0	0	0	0	1	0	0	0	3499	1291	45	2	27	2	CLCNKA	1	16349139	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	78066	16349139	232901482	39	18889										
FAM131C	0	genome.wustl.edu	37	chr1	16385199	16385199	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaggctgtcctgaaggtaGatgctctccagatctggaaa	13	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16385199	16385199	G	T	SNP	FAM131C	ENST00000375662	human	ensembl	69_37n	-1	known	silent	c.576	p.I192	0.951	NULL	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519	51	0	0	35	8	18.6	-	-	-	T	16385199	G	T	16385199	2	4	240	1	0	0	0	0	0	0	0	1	5481	932	33	2		2	FAM131C	1	16385199	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	36060	16385199	232865422	40	18890										
EPHA2	0	genome.wustl.edu	37	chr1	16456789	16456789	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttgtccaggatgctgacGatgtcagcgaacttggggcg	15	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	16456789	16456789	G	A	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	silent	c.2601	p.I867	0.905	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	93	0	0	58	25	30.12	-	-	-	A	16456789	G	A	16456789	2	1	240	1	0	0	0	0	0	0	0	1	5204	1048	37	1		1	EPHA2	1	16456789	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	71590	16456789	232793832	41	18891										
CROCC	0	genome.wustl.edu	37	chr1	17285117	17285117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacaccagactgggccggGagctggcggagctgcagggc	18	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	17285117	17285117	G	A	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.3904	p.E1302K	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	12	0	0	8	6	42.86	-	-	-	A	17285117	G	A	17285117	3	1	240	1	0	0	0	0	1	0	0	0	3923	1175	41	2	4006	2	CROCC	1	17285117	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	828328	17285117	231965504	42	18892										
TAS1R2	0	genome.wustl.edu	37	chr1	19180959	19180959	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccactcgcggaactcactGaagcccgggatgggcacgct	12	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	19180959	19180959	G	T	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	missense	c.1005	p.F335L	0.998	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	55	0	0	40	10	20	-	-	-	T	19180959	G	T	19180959	3	4	240	1	0	0	0	0	1	0	0	0	15655	1281	45	2	1530	2	TAS1R2	1	19180959	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1895842	19180959	230069662	43	18893										
UBR4	0	genome.wustl.edu	37	chr1	19470545	19470545	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttcctgggccttaggactCgaattagagcttgtttacaa	10	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	19470545	19470545	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.8108	p.R2703P	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	135	0	0	103	40	27.97	-	-	-	G	19470545	C	G	19470545	3	3	240	1	0	0	0	0	1	0	0	0	17001	884	31	3	7651	3	UBR4	1	19470545	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	289586	19470545	229780076	44	18894										
UBR4	0	genome.wustl.edu	37	chr1	19481938	19481938	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaacatgtgctctaaccttCaggtcctcatgattgatttc	7	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	19481938	19481938	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.6297	p.L2099	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	40	0	0	41	14	25.45	-	-	-	G	19481938	C	G	19481938	2	3	240	1	0	0	0	0	0	0	0	1	17001	813	29	2		2	UBR4	1	19481938	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11393	19481938	229768683	45	18895										
CAPZB	0	genome.wustl.edu	37	chr1	19683156	19683156	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaggctgcctccgaggttCatggtgccagagccagattt	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	19683156	19683156	C	T	SNP	CAPZB	ENST00000433834	human	ensembl	69_37n	-1	known	missense	c.648	p.M216I	1.000	pfam_WASH_F-actin_cap_beta	pfam_WASH_F-actin_cap_beta,prints_WASH_F-actin_cap_beta	-	no_errors	CAPZB	HGNC	ENSG00000077549	61	0	0	68	18	20.93	-	-	-	T	19683156	C	T	19683156	3	4	240	1	0	0	0	0	1	0	0	0	2668	826	29	2	273	2	CAPZB	1	19683156	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	201218	19683156	229567465	46	18896										
PLA2G2C	0	genome.wustl.edu	37	chr1	20499354	20499354	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctggcagctgaactccttCagcttctcgtagggagaggg	15	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	20499354	20499354	C	T	SNP	PLA2G2C	ENST00000247992	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	1.000	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2C	HGNC	ENSG00000187980	46	0	0	29	8	21.62	-	-	-	T	20499354	C	T	20499354	2	4	240	1	0	0	0	0	0	0	0	1	12070	813	29	2		2	PLA2G2C	1	20499354	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	816198	20499354	228751267	47	18897										
UBXN10	0	genome.wustl.edu	37	chr1	20517545	20517545	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaagtgaagaagattccaGagctcgagcttgtgccgtgg	14	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	20517545	20517545	G	C	SNP	UBXN10	ENST00000375099	human	ensembl	69_37n	1	known	missense	c.491	p.R164T	0.534	NULL	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543	53	0	0	52	18	25.71	-	-	-	C	20517545	G	C	20517545	3	2	240	1	0	0	0	0	1	0	0	0	17009	942	33	2	493	2	UBXN10	1	20517545	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18191	20517545	228733076	48	18898										
EIF4G3	0	genome.wustl.edu	37	chr1	21268047	21268047	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatctcttctgtttgcccatCtgcttctacctctattttgt	4	12	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	21268047	21268047	C	A	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	missense	c.1450	p.D484Y	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	154	0	0	120	39	24.53	-	-	-	A	21268047	C	A	21268047	3	1	240	1	0	0	0	0	1	0	0	0	5075	913	32	2	3421	2	EIF4G3	1	21268047	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	750502	21268047	227982574	49	18899										
HSPG2	0	genome.wustl.edu	37	chr1	22160389	22160389	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaccagcaggcacacggaCttcttggggcattgagatct	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	22160389	22160389	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.10750	p.V3584L	0.999	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	31	0	0	36	9	20	-	-	-	G	22160389	C	G	22160389	3	3	240	1	0	0	0	0	1	0	0	0	7484	565	20	4	2505	4	HSPG2	1	22160389	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	892342	22160389	227090232	50	18900										
HSPG2	0	genome.wustl.edu	37	chr1	22216564	22216564	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccctgagcagcatctcctGaatctgagccccatccgcat	8	16	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	22216564	22216564	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	nonsense	c.484	p.Q162*	0.999	smart_SEA,pfscan_SEA	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	124	0	0	97	24	19.83	-	-	-	A	22216564	G	A	22216564	4	1	240	1	0	0	0	0	0	1	0	0	7484	1299	45	2	13059	2	HSPG2	1	22216564	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	56175	22216564	227034057	51	18901										
EPHA8	0	genome.wustl.edu	37	chr1	22903006	22903006	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaccattgcggccgacgaGagcttcacaggtgccgacct	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	22903006	22903006	G	A	SNP	EPHA8	ENST00000166244	human	ensembl	69_37n	1	known	silent	c.456	p.E152	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	49	0	0	22	17	43.59	-	-	-	A	22903006	G	A	22903006	2	1	240	1	0	0	0	0	0	0	0	1	5210	933	33	2		2	EPHA8	1	22903006	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	686442	22903006	226347615	52	18902										
EPHA8	0	genome.wustl.edu	37	chr1	22927462	22927462	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccacgccctgcaccagctCatgctcgactgttggcacaa	8	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	22927462	22927462	C	A	SNP	EPHA8	ENST00000166244	human	ensembl	69_37n	1	known	silent	c.2610	p.L870	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	21	0	0	15	5	25	-	-	-	A	22927462	C	A	22927462	2	1	240	1	0	0	0	0	0	0	0	1	5210	813	29	2		2	EPHA8	1	22927462	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24456	22927462	226323159	53	18903										
KDM1A	0	genome.wustl.edu	37	chr1	23395041	23395041	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggattttcaggttcctaaaGagaaagatgaaatggtagag	12	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	23395041	23395041	G	C	SNP	KDM1A	ENST00000542151	human	ensembl	69_37n	1	known	missense	c.1189	p.E397Q	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487	73	0	0	52	15	22.39	-	-	-	C	23395041	G	C	23395041	3	2	240	1	0	0	0	0	1	0	0	0	8176	943	33	2	1231	2	KDM1A	1	23395041	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	467579	23395041	225855580	54	18904										
LUZP1	0	genome.wustl.edu	37	chr1	23417965	23417965	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggggtcttctaaagatttCaagtctcgcctactcttcca	9	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	23417965	23417965	C	A	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.2790	p.L930F	0.999	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	58	0	0	49	12	19.67	-	-	-	A	23417965	C	A	23417965	3	1	240	1	0	0	0	0	1	0	0	0	9152	825	29	2	448	2	LUZP1	1	23417965	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22924	23417965	225832656	55	18905										
LUZP1	0	genome.wustl.edu	37	chr1	23419095	23419095	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagccagagtttgcagcctGagttacttgacttccgttgc	10	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	23419095	23419095	G	A	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	nonsense	c.1660	p.Q554*	0.003	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	56	0	0	51	20	28.17	-	-	-	A	23419095	G	A	23419095	4	1	240	1	0	0	0	0	0	1	0	0	9152	1299	45	2	1578	2	LUZP1	1	23419095	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1130	23419095	225831526	56	18906										
FUCA1	0	genome.wustl.edu	37	chr1	24172288	24172288	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggggtagagagatgaagaGacctttatctggatctgtgg	15	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	24172288	24172288	G	C	SNP	FUCA1	ENST00000374479	human	ensembl	69_37n	-1	known	missense	c.1318	p.L440V	0.048	pirsf_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA1	HGNC	ENSG00000179163	82	0	0	44	27	38.03	-	-	-	C	24172288	G	C	24172288	3	2	240	1	0	0	0	0	1	0	0	0	6143	942	33	2	86	2	FUCA1	1	24172288	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	753193	24172288	225078333	57	18907										
MYOM3	0	genome.wustl.edu	37	chr1	24384096	24384096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggggtggggtctcctgagaCgatgcaagtcaagcacaggg	17	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	24384096	24384096	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.4081	p.V1361I	0.877	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	44	0	0	59	19	24.36	-	-	-	T	24384096	C	T	24384096	3	4	240	1	0	0	0	0	1	0	0	0	10165	536	19	1	245	1	MYOM3	1	24384096	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	211808	24384096	224866525	58	18908										
MYOM3	0	genome.wustl.edu	37	chr1	24406556	24406556	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgaccggcttccactgctCagagccttcctcctggaaac	10	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	24406556	24406556	C	G	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.2539	p.E847Q	0.984	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	45	0	0	49	10	16.95	-	-	-	G	24406556	C	G	24406556	3	3	240	1	0	0	0	0	1	0	0	0	10165	835	29	2	1849	2	MYOM3	1	24406556	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22460	24406556	224844065	59	18909										
TMEM57	0	genome.wustl.edu	37	chr1	25812149	25812149	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaaagacaagcagaatatCagccagttggagaaaaagct	9	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	25812149	25812149	C	T	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	silent	c.1359	p.I453	1.000	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	103	0	0	73	17	18.89	-	-	-	T	25812149	C	T	25812149	2	4	240	1	0	0	0	0	0	0	0	1	16279	816	29	2		2	TMEM57	1	25812149	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1405593	25812149	223438472	60	18910										
CATSPER4	0	genome.wustl.edu	37	chr1	26527894	26527894	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaaccaggagcaggagtcaGaggtgttgaacaggcgctcg	15	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	26527894	26527894	G	C	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	missense	c.1249	p.E417Q	0.279	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	45	0	0	20	16	44.44	-	-	-	C	26527894	G	C	26527894	3	2	240	1	0	0	0	0	1	0	0	0	2715	943	33	2	1283	2	CATSPER4	1	26527894	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	715745	26527894	222722727	61	18911										
DHDDS	0	genome.wustl.edu	37	chr1	26764700	26764700	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcattcataatggacggGaaccgtcgctatgccaagaa	10	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	26764700	26764700	G	A	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	silent	c.105	p.G35	0.965	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	66	0	0	64	18	21.95	-	-	-	A	26764700	G	A	26764700	2	1	240	1	0	0	0	0	0	0	0	1	4514	1161	41	2		2	DHDDS	1	26764700	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	236806	26764700	222485921	62	18912										
ARID1A	0	genome.wustl.edu	37	chr1	27099940	27099940	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggctaggaaatgtggcgatGggaccacgacagcactatcc	14	10	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27099940	27099940	G	A	SNP	ARID1A	ENST00000466382	human	ensembl	69_37n	1	known	nonsense	c.128	p.W43*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARID1A	HGNC	ENSG00000117713	47	0	0	36	13	26	-	-	-	A	27099940	G	A	27099940	4	1	240	1	0	0	0	0	0	1	0	0	915	1348	47	4	3877	4	ARID1A	1	27099940	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	335240	27099940	222150681	63	18913										
SFN	0	genome.wustl.edu	37	chr1	27189721	27189721	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccatggagagagccagtctGatccagaaggccaagctggc	14	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27189721	27189721	G	T	SNP	SFN	ENST00000339276	human	ensembl	69_37n	1	known	silent	c.18	p.L6	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	SFN	HGNC	ENSG00000175793	31	0	0	19	5	20.83	-	-	-	T	27189721	G	T	27189721	2	4	240	1	0	0	0	0	0	0	0	1	14247	1277	45	2		2	SFN	1	27189721	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	89781	27189721	222060900	64	18914										
SFN	0	genome.wustl.edu	37	chr1	27190072	27190072	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgggtcttctacctgaagatGaagggtgactactaccgcta	11	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27190072	27190072	G	T	SNP	SFN	ENST00000339276	human	ensembl	69_37n	1	known	missense	c.369	p.M123I	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	SFN	HGNC	ENSG00000175793	51	0	0	36	17	32.08	-	-	-	T	27190072	G	T	27190072	3	4	240	1	0	0	0	0	1	0	0	0	14247	1290	45	2	371	2	SFN	1	27190072	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	351	27190072	222060549	65	18915										
GPATCH3	0	genome.wustl.edu	37	chr1	27220757	27220757	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctgccagaactgggcatCagtataaaacaccaggccag	9	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27220757	27220757	C	T	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.1021	p.D341N	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	97	0	0	84	21	20	-	-	-	T	27220757	C	T	27220757	3	4	240	1	0	0	0	0	1	0	0	0	6642	826	29	2	576	2	GPATCH3	1	27220757	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30685	27220757	222029864	66	18916										
GPATCH3	0	genome.wustl.edu	37	chr1	27220864	27220864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggtcacgtcctcatgcagcGcttcatgccgttcccattcc	8	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27220864	27220864	G	A	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.914	p.A305V	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	73	0	0	79	22	21.78	-	-	-	A	27220864	G	A	27220864	3	1	240	1	0	0	0	0	1	0	0	0	6642	1087	38	1	683	1	GPATCH3	1	27220864	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	107	27220864	222029757	67	18917										
WDTC1	0	genome.wustl.edu	37	chr1	27627856	27627856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagccctggagtgcctggacGacttcaaagggaaatttccg	12	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27627856	27627856	G	A	SNP	WDTC1	ENST00000319394	human	ensembl	69_37n	1	known	missense	c.1372	p.D458N	1.000	superfamily_WD40_repeat_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784	34	0	0	36	11	22.92	-	-	-	A	27627856	G	A	27627856	3	1	240	1	0	0	0	0	1	0	0	0	17439	1058	37	1	1415	1	WDTC1	1	27627856	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	406992	27627856	221622765	68	18918										
SYTL1	0	genome.wustl.edu	37	chr1	27673972	27673972	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctgacaggggactggttCcaggaagcacgctcccagcg	13	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	27673972	27673972	C	G	SNP	SYTL1	ENST00000543823	human	ensembl	69_37n	1	known	missense	c.252	p.F84L	1.000	pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL1	HGNC	ENSG00000142765	32	0	0	31	13	29.55	-	-	-	G	27673972	C	G	27673972	3	3	240	1	0	0	0	0	1	0	0	0	15574	854	30	2	258	2	SYTL1	1	27673972	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46116	27673972	221576649	69	18919										
FAM76A	0	genome.wustl.edu	37	chr1	28060639	28060639	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagtatggaccaccctattCttgtgaacagtgcaagcagc	10	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	28060639	28060639	C	G	SNP	FAM76A	ENST00000010299	human	ensembl	69_37n	1	known	missense	c.401	p.S134C	0.957	NULL	NULL	-	no_errors	FAM76A	HGNC	ENSG00000009780	92	0	0	71	22	23.66	-	-	-	G	28060639	C	G	28060639	3	3	240	1	0	0	0	0	1	0	0	0	5669	913	32	2	419	2	FAM76A	1	28060639	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	386667	28060639	221189982	70	18920										
SMPDL3B	0	genome.wustl.edu	37	chr1	28279862	28279862	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgagtccatcgctctcttCaaaaaaggtaccaacaccac	5	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	28279862	28279862	C	T	SNP	SMPDL3B	ENST00000373894	human	ensembl	69_37n	1	known	silent	c.510	p.F170	1.000	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3B	HGNC	ENSG00000130768	69	0	0	60	22	26.83	-	-	-	T	28279862	C	T	28279862	2	4	240	1	0	0	0	0	0	0	0	1	14898	825	29	2		2	SMPDL3B	1	28279862	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	219223	28279862	220970759	71	18921										
TMEM200B	0	genome.wustl.edu	37	chr1	29447470	29447470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatttggcatagcccccaaGactgaggcggtccagccgtg	12	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	29447470	29447470	G	C	SNP	TMEM200B	ENST00000420504	human	ensembl	69_37n	-1	known	missense	c.871	p.L291V	0.981	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200B	HGNC	ENSG00000253304	15	0	0	9	5	35.71	-	-	-	C	29447470	G	C	29447470	3	2	240	1	0	0	0	0	1	0	0	0	16219	942	33	2	56	2	TMEM200B	1	29447470	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1167608	29447470	219803151	72	18922										
PEF1	0	genome.wustl.edu	37	chr1	32100927	32100927	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggtcctcctggagttccaGaggggaacatcccaggattg	13	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	32100927	32100927	G	C	SNP	PEF1	ENST00000373703	human	ensembl	69_37n	-1	known	missense	c.221	p.S74C	0.935	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	PEF1	HGNC	ENSG00000162517	16	0	0	14	5	26.32	-	-	-	C	32100927	G	C	32100927	3	2	240	1	0	0	0	0	1	0	0	0	11791	942	33	2	649	2	PEF1	1	32100927	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2653457	32100927	217149694	73	18923										
BAI2	0	genome.wustl.edu	37	chr1	32205600	32205600	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaggtgaatgaagtcctcCacgacacggagcaggtgcac	12	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	32205600	32205600	C	G	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	silent	c.2094	p.V698	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	64	0	0	72	23	24.21	-	-	-	G	32205600	C	G	32205600	2	3	240	1	0	0	0	0	0	0	0	1	1303	581	21	4		4	BAI2	1	32205600	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	104673	32205600	217045021	74	18924										
DCDC2B	0	genome.wustl.edu	37	chr1	32680469	32680469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaattaagccatctgctttCtatgccagaccccagcagac	7	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	32680469	32680469	C	G	SNP	DCDC2B	ENST00000409358	human	ensembl	69_37n	1	known	missense	c.786	p.F262L	0.730	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2B	HGNC	ENSG00000222046	51	0	0	64	16	20	-	-	-	G	32680469	C	G	32680469	3	3	240	1	0	0	0	0	1	0	0	0	4317	912	32	2	812	2	DCDC2B	1	32680469	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	474869	32680469	216570152	75	18925										
ZBTB8A	0	genome.wustl.edu	37	chr1	33065914	33065914	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgagtgaagatgagaataGatcctatgtggagattgtag	13	3	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	33065914	33065914	G	A	SNP	ZBTB8A	ENST00000373510	human	ensembl	69_37n	1	known	missense	c.1220	p.R407K	0.981	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB8A	HGNC	ENSG00000160062	106	1	0.93	94	21	18.26	-	-	-	A	33065914	G	A	33065914	3	1	240	1	0	0	0	0	1	0	0	0	17652	942	33	2	1230	2	ZBTB8A	1	33065914	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	385445	33065914	216184707	76	18926										
CSMD2	0	genome.wustl.edu	37	chr1	34123697	34123697	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaccactccgactcccattCtgcgggatcccagggtcatt	8	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	34123697	34123697	C	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.4296	p.Q1432H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	33	0	0	42	11	20.75	-	-	-	G	34123697	C	G	34123697	3	3	240	1	0	0	0	0	1	0	0	0	3977	912	32	2	6459	2	CSMD2	1	34123697	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1057783	34123697	215126924	77	18927										
CSMD2	0	genome.wustl.edu	37	chr1	34174866	34174866	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcccacactcagctggaaaGagaatcacaataaccataga	6	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	34174866	34174866	G	C	SNP	CSMD2	ENST00000373380	human	ensembl	69_37n	-1	known	silent	c.18	p.L6	0.987	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	58	0	0	35	9	20.45	-	-	-	C	34174866	G	C	34174866	2	2	240	1	0	0	0	0	0	0	0	1	3977	957	33	2		2	CSMD2	1	34174866	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51169	34174866	215075755	78	18928										
CSMD2	0	genome.wustl.edu	37	chr1	34209028	34209028	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcctcggcggtggccccatCcttgatgaccaggaaatcaa	11	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	34209028	34209028	C	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.2026	p.D676H	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	39	0	0	38	16	29.63	-	-	-	G	34209028	C	G	34209028	3	3	240	1	0	0	0	0	1	0	0	0	3977	855	30	2	8781	2	CSMD2	1	34209028	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34162	34209028	215041593	79	18929										
GJB4	0	genome.wustl.edu	37	chr1	35227254	35227254	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtggtggacgtacttgctGagcctcatcttcaaggccgc	12	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	35227254	35227254	G	C	SNP	GJB4	ENST00000339480	human	ensembl	69_37n	1	known	silent	c.399	p.L133	0.999	prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433	44	0	0	33	11	25	-	-	-	C	35227254	G	C	35227254	2	2	240	1	0	0	0	0	0	0	0	1	6462	1277	45	2		2	GJB4	1	35227254	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1018226	35227254	214023367	80	18930										
ZMYM6	0	genome.wustl.edu	37	chr1	35453172	35453172	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgatgaatttgagaattCagaaaatgaagggaacatgt	11	4	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	35453172	35453172	C	G	SNP	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	missense	c.3511	p.E1171Q	0.806	superfamily_RNaseH-like_dom	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	38	0	0	43	17	28.33	-	-	-	G	35453172	C	G	35453172	3	3	240	1	0	0	0	0	1	0	0	0	17800	835	29	2	470	2	ZMYM6	1	35453172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	225918	35453172	213797449	81	18931										
ZMYM1	0	genome.wustl.edu	37	chr1	35559682	35559682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacagaacccgacaatgctCaagtaaatattttcccttat	5	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	35559682	35559682	C	G	SNP	ZMYM1	ENST00000359858	human	ensembl	69_37n	1	known	missense	c.94	p.Q32E	1.000	NULL	pfam_Znf_MYM,pfam_HATC,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM1	HGNC	ENSG00000197056	77	0	0	33	16	32.65	-	-	-	G	35559682	C	G	35559682	3	3	240	1	0	0	0	0	1	0	0	0	17795	827	29	2	96	2	ZMYM1	1	35559682	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106510	35559682	213690939	82	18932										
ZMYM1	0	genome.wustl.edu	37	chr1	35579217	35579217	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttagaaatgagagcaaaaGataaaggagaagaaacattt	10	2	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	35579217	35579217	G	C	SNP	ZMYM1	ENST00000359858	human	ensembl	69_37n	1	known	missense	c.1786	p.D596H	0.997	NULL	pfam_Znf_MYM,pfam_HATC,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM1	HGNC	ENSG00000197056	24	0	0	22	8	26.67	-	-	-	C	35579217	G	C	35579217	3	2	240	1	0	0	0	0	1	0	0	0	17795	942	33	2	1820	2	ZMYM1	1	35579217	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19535	35579217	213671404	83	18933										
CLSPN	0	genome.wustl.edu	37	chr1	36208788	36208788	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcaggagttcttcttcatCatcatcttcatggtcttcca	5	12	9	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36208788	36208788	C	T	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	missense	c.3097	p.D1033N	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	101	0	0	71	19	21.11	-	-	-	T	36208788	C	T	36208788	3	4	240	1	0	0	0	0	1	0	0	0	3590	826	29	2	954	2	CLSPN	1	36208788	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	629571	36208788	213041833	84	18934										
CLSPN	0	genome.wustl.edu	37	chr1	36212416	36212416	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcagaagttcctccatgttCtctttcttgtcactcttcct	4	13	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36212416	36212416	C	T	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	silent	c.2805	p.E935	0.563	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	182	0	0	114	38	25	-	-	-	T	36212416	C	T	36212416	2	4	240	1	0	0	0	0	0	0	0	1	3590	912	32	2		2	CLSPN	1	36212416	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3628	36212416	213038205	85	18935										
EIF2C1	0	genome.wustl.edu	37	chr1	36372656	36372656	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcctatgttccggcatctCaagaacacctactcagggct	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36372656	36372656	C	G	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	silent	c.1518	p.L506	1.000	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	85	0	0	64	20	23.81	-	-	-	G	36372656	C	G	36372656	2	3	240	1	0	0	0	0	0	0	0	1	5040	813	29	2		2	EIF2C1	1	36372656	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	160240	36372656	212877965	86	18936										
EIF2C1	0	genome.wustl.edu	37	chr1	36379798	36379798	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctcagctctgccgtttttCaacagccagtgatattcctg	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36379798	36379798	C	G	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.1756	p.Q586E	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	73	0	0	69	14	16.87	-	-	-	G	36379798	C	G	36379798	3	3	240	1	0	0	0	0	1	0	0	0	5040	827	29	2	1810	2	EIF2C1	1	36379798	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7142	36379798	212870823	87	18937										
EIF2C3	0	genome.wustl.edu	37	chr1	36474555	36474555	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacagtagcgcagtatttCagagaaaagtatactcttca	8	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36474555	36474555	C	T	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	silent	c.939	p.F313	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	65	0	0	45	22	32.84	-	-	-	T	36474555	C	T	36474555	2	4	240	1	0	0	0	0	0	0	0	1	5042	825	29	2		2	EIF2C3	1	36474555	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94757	36474555	212776066	88	18938										
TRAPPC3	0	genome.wustl.edu	37	chr1	36603505	36603505	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggggttattttccaaaatGagggagaattcatcaccagc	10	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	36603505	36603505	G	C	SNP	TRAPPC3	ENST00000373166	human	ensembl	69_37n	-1	known	silent	c.315	p.L105	1.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	54	0	0	34	13	27.66	-	-	-	C	36603505	G	C	36603505	2	2	240	1	0	0	0	0	0	0	0	1	16556	1277	45	2		2	TRAPPC3	1	36603505	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128950	36603505	212647116	89	18939										
GRIK3	0	genome.wustl.edu	37	chr1	37291371	37291371	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaagggcttggagaagtcGatggccttctctcgaacatg	13	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	37291371	37291371	G	T	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	silent	c.1587	p.I529	0.534	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	59	0	0	48	16	25	-	-	-	T	37291371	G	T	37291371	2	4	240	1	0	0	0	0	0	0	0	1	6826	1048	37	3		3	GRIK3	1	37291371	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	687866	37291371	211959250	90	18940										
GRIK3	0	genome.wustl.edu	37	chr1	37319310	37319310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacaattcgtccagttaatCcttcccattgagcctgcgga	7	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	37319310	37319310	C	T	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	missense	c.1118	p.G373E	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	90	0	0	67	15	18.29	-	-	-	T	37319310	C	T	37319310	3	4	240	1	0	0	0	0	1	0	0	0	6826	855	30	2	1677	2	GRIK3	1	37319310	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27939	37319310	211931311	91	18941										
YRDC	0	genome.wustl.edu	37	chr1	38272574	38272574	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagctgaggttggcactagtGagagcaagcggaccctcaaa	14	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	38272574	38272574	G	A	SNP	YRDC	ENST00000373044	human	ensembl	69_37n	-1	known	silent	c.579	p.L193	0.997	pfam_YrdC-like_dom,superfamily_DHBP_synth_RibB-like_a/b_dom,pfscan_YrdC-like_dom,tigrfam_YrdC-like_dom	pfam_YrdC-like_dom,superfamily_DHBP_synth_RibB-like_a/b_dom,pfscan_YrdC-like_dom,tigrfam_YrdC-like_dom	-	no_errors	YRDC	HGNC	ENSG00000196449	64	0	0	47	13	21.31	-	-	-	A	38272574	G	A	38272574	2	1	240	1	0	0	0	0	0	0	0	1	17591	1277	45	2		2	YRDC	1	38272574	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	953264	38272574	210978047	92	18942										
RLF	0	genome.wustl.edu	37	chr1	40702532	40702532	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagaagtgtacttactgtCgacgacattttatgtctgct	10	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	40702532	40702532	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	nonsense	c.2158	p.R720*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	46	0	0	35	9	20.45	-	-	-	T	40702532	C	T	40702532	4	4	240	1	0	0	0	0	0	1	0	0	13475	876	31	1	2188	1	RLF	1	40702532	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2429958	40702532	208548089	93	18943										
RLF	0	genome.wustl.edu	37	chr1	40705496	40705496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctaatcccaatgggactGaaagtgggacttatttcaca	8	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	40705496	40705496	G	C	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.5122	p.E1708Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	18	0	0	12	4	25	-	-	-	C	40705496	G	C	40705496	3	2	240	1	0	0	0	0	1	0	0	0	13475	1291	45	2	5152	2	RLF	1	40705496	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2964	40705496	208545125	94	18944										
RIMS3	0	genome.wustl.edu	37	chr1	41095016	41095016	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccacctccagctggccactCcggtccatgatggcaatgtg	10	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	41095016	41095016	C	G	SNP	RIMS3	ENST00000372683	human	ensembl	69_37n	-1	known	silent	c.501	p.R167	0.979	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RIMS3	HGNC	ENSG00000117016	40	0	0	37	9	19.57	-	-	-	G	41095016	C	G	41095016	2	3	240	1	0	0	0	0	0	0	0	1	13455	842	30	2		2	RIMS3	1	41095016	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	389520	41095016	208155605	95	18945										
NFYC	0	genome.wustl.edu	37	chr1	41236499	41236499	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccccaggtgaccggcgactGagggcctgagctggcaaggc	16	14	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	41236499	41236499	G	A	SNP	NFYC	ENST00000308733	human	ensembl	69_37n	1	known	silent	c.1376	p.*459	1.000	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136	30	0	0	17	5	22.73	-	-	-	A	41236499	G	A	41236499	2	1	240	1	0	0	0	0	0	0	0	1	10463	1285	45	2		2	NFYC	1	41236499	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	141483	41236499	208014122	96	18946										
HIVEP3	0	genome.wustl.edu	37	chr1	41979293	41979293	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcctggctctcctcctCatcctcatcctcgtcttcgt	4	19	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	41979293	41979293	C	G	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.5599	p.E1867Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	56	0	0	55	9	13.85	-	-	-	G	41979293	C	G	41979293	3	3	240	1	0	0	0	0	1	0	0	0	7239	835	29	2	1629	2	HIVEP3	1	41979293	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	742794	41979293	207271328	97	18947										
HIVEP3	0	genome.wustl.edu	37	chr1	42047347	42047347	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctcaccaagaagcattttCttctctctggcggggccacc	9	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	42047347	42047347	C	G	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.3122	p.R1041T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	54	0	0	48	17	26.15	-	-	-	G	42047347	C	G	42047347	3	3	240	1	0	0	0	0	1	0	0	0	7239	913	32	2	4122	2	HIVEP3	1	42047347	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68054	42047347	207203274	98	18948										
HIVEP3	0	genome.wustl.edu	37	chr1	42047774	42047774	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttttgggtggcagcttctCagctgggagctgggcaagtg	16	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	42047774	42047774	C	G	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.2695	p.E899Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	67	0	0	62	22	26.19	-	-	-	G	42047774	C	G	42047774	3	3	240	1	0	0	0	0	1	0	0	0	7239	835	29	2	4549	2	HIVEP3	1	42047774	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	427	42047774	207202847	99	18949										
HIVEP3	0	genome.wustl.edu	37	chr1	42048590	42048590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggtctttttggtaagctCgctttccttgggttccactt	9	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	42048590	42048590	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.1879	p.E627K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	91	0	0	73	28	27.72	-	-	-	T	42048590	C	T	42048590	3	4	240	1	0	0	0	0	1	0	0	0	7239	893	31	1	5365	1	HIVEP3	1	42048590	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	816	42048590	207202031	100	18950										
CCDC30	0	genome.wustl.edu	37	chr1	43111899	43111899	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaagaaatatacagcactGaggtcttcaccagcaacaat	7	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	43111899	43111899	G	A	SNP	CCDC30	ENST00000340612	human	ensembl	69_37n	1	known	missense	c.1984	p.E662K	0.021	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409	82	0	0	48	21	30.43	-	-	-	A	43111899	G	A	43111899	3	1	240	1	0	0	0	0	1	0	0	0	2831	1291	45	2	2034	2	CCDC30	1	43111899	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1063309	43111899	206138722	101	18951										
LEPRE1	0	genome.wustl.edu	37	chr1	43218318	43218318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggtgagactgatgccttCatacagcagggggccacctg	13	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	43218318	43218318	C	T	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1363	p.E455K	0.907	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	57	0	0	43	8	15.69	-	-	-	T	43218318	C	T	43218318	3	4	240	1	0	0	0	0	1	0	0	0	8783	835	29	2	894	2	LEPRE1	1	43218318	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106419	43218318	206032303	102	18952										
PTPRF	0	genome.wustl.edu	37	chr1	44086512	44086512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacccacctttcccaggatGggcagtcaaggacaatccgg	10	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	44086512	44086512	G	A	SNP	PTPRF	ENST00000414879	human	ensembl	69_37n	1	novel	nonsense	c.3641	p.W1214*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTPRF	HGNC	ENSG00000142949	51	0	0	37	11	22.92	-	-	-	A	44086512	G	A	44086512	4	1	240	1	0	0	0	0	0	1	0	0	12884	1348	47	4	5486	4	PTPRF	1	44086512	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	868194	44086512	205164109	103	18953										
IPO13	0	genome.wustl.edu	37	chr1	44413313	44413313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgggggctgcaggggctgGagcagcaccagccttggact	18	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	44413313	44413313	G	A	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	missense	c.41	p.G14E	1.000	NULL	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	31	0	0	15	6	28.57	-	-	-	A	44413313	G	A	44413313	3	1	240	1	0	0	0	0	1	0	0	0	7848	1174	41	2	43	2	IPO13	1	44413313	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	326801	44413313	204837308	104	18954										
IPO13	0	genome.wustl.edu	37	chr1	44415664	44415664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacccagctgtgtgcgtcaGaaggtgctcaagtgtttctc	11	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	44415664	44415664	G	C	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	missense	c.660	p.Q220H	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	14	0	0	14	8	36.36	-	-	-	C	44415664	G	C	44415664	3	2	240	1	0	0	0	0	1	0	0	0	7848	933	33	2	666	2	IPO13	1	44415664	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2351	44415664	204834957	105	18955										
IPO13	0	genome.wustl.edu	37	chr1	44423181	44423181	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcccacggatcagcatCagcaacgtgcagctggcaga	10	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	44423181	44423181	C	T	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	silent	c.1500	p.I500	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	47	0	0	51	20	28.17	-	-	-	T	44423181	C	T	44423181	2	4	240	1	0	0	0	0	0	0	0	1	7848	816	29	2		2	IPO13	1	44423181	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7517	44423181	204827440	106	18956										
EIF2B3	0	genome.wustl.edu	37	chr1	45444133	45444133	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttgtaaccacaatgacttCtataggacaaaagaaaaaaa	7	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	45444133	45444133	C	T	SNP	EIF2B3	ENST00000360403	human	ensembl	69_37n	-1	known	splice_site	c.149-1	e2-1	1.000	-	-	-	no_errors	EIF2B3	HGNC	ENSG00000070785	143	0	0	105	27	20.45	-	-	-	T	45444133	C	T	45444133	5	4	240	1	0	0	0	0	0	0	1	0	5037	927	32	2	1287	2	EIF2B3	1	45444133	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1020952	45444133	203806488	107	18957										
ZSWIM5	0	genome.wustl.edu	37	chr1	45484876	45484876	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctgtggatagtcaagactGaggcgcaggatagtggtgtg	17	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	45484876	45484876	G	A	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	silent	c.2808	p.L936	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	63	0	0	58	19	24.68	-	-	-	A	45484876	G	A	45484876	2	1	240	1	0	0	0	0	0	0	0	1	18335	1277	45	2		2	ZSWIM5	1	45484876	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40743	45484876	203765745	108	18958										
ZSWIM5	0	genome.wustl.edu	37	chr1	45501903	45501903	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccaatgacaggtaggactCactgctgtttggggagcctg	15	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	45501903	45501903	C	A	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	nonsense	c.1963	p.E655*	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	45	0	0	51	19	27.14	-	-	-	A	45501903	C	A	45501903	4	1	240	1	0	0	0	0	0	1	0	0	18335	835	29	2	1618	2	ZSWIM5	1	45501903	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17027	45501903	203748718	109	18959										
TESK2	0	genome.wustl.edu	37	chr1	45923281	45923281	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccctattttttcacaggtGaaatcatccaaacgcgtcag	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	45923281	45923281	G	A	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	silent	c.177	p.F59	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	95	0	0	54	18	25	-	-	-	A	45923281	G	A	45923281	2	1	240	1	0	0	0	0	0	0	0	1	15863	1281	45	2		2	TESK2	1	45923281	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	421378	45923281	203327340	110	18960										
PIK3R3	0	genome.wustl.edu	37	chr1	46509513	46509513	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagccccgagcagtgctgtaGatcacacagtgcttcacttc	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	46509513	46509513	G	T	SNP	PIK3R3	ENST00000540385	human	ensembl	69_37n	-1	known	silent	c.1356	p.I452	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461	70	0	0	70	18	20.45	-	-	-	T	46509513	G	T	46509513	2	4	240	1	0	0	0	0	0	0	0	1	11994	932	33	2		2	PIK3R3	1	46509513	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	586232	46509513	202741108	111	18961										
LRRC41	0	genome.wustl.edu	37	chr1	46727077	46727077	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtacttgactctcagcagtCtgggtggtaggagaaaatct	13	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	46727077	46727077	C	T	SNP	LRRC41	ENST00000496156	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128	83	0	0	61	23	27.38	-	-	-	T	46727077	C	T	46727077	5	4	240	1	0	0	0	0	0	0	1	0	9065	928	32	2		2	LRRC41	1	46727077	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	217564	46727077	202523544	112	18962										
RAD54L	0	genome.wustl.edu	37	chr1	46743953	46743953	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcagcggggcctccgctGataaccagctggtctgggtg	17	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	46743953	46743953	G	T	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	1	known	nonstop	c.2243	p.*748L	0.179	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	25	0	0	23	5	17.86	-	-	-	T	46743953	G	T	46743953	4	4	240	1	0	0	0	0	0	0	0	0	13076	1285	45	2	2313	2	RAD54L	1	46743953	Nonstop_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16876	46743953	202506668	113	18963										
STIL	0	genome.wustl.edu	37	chr1	47717300	47717300	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgtaggagtccatatctCttcatatattttttggttgc	7	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	47717300	47717300	C	G	SNP	STIL	ENST00000371877	human	ensembl	69_37n	-1	known	missense	c.3375	p.K1125N	1.000	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473	120	0	0	84	38	31.15	-	-	-	G	47717300	C	G	47717300	3	3	240	1	0	0	0	0	1	0	0	0	15373	912	32	2	495	2	STIL	1	47717300	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	973347	47717300	201533321	114	18964										
FOXE3	0	genome.wustl.edu	37	chr1	47882467	47882467	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgttcgacaacggcagcttCctgcggcgccgcaagcgctt	12	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	47882467	47882467	C	T	SNP	FOXE3	ENST00000335071	human	ensembl	69_37n	1	known	silent	c.480	p.F160	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE3	HGNC	ENSG00000186790	8	0	0	5	7	58.33	-	-	-	T	47882467	C	T	47882467	2	4	240	1	0	0	0	0	0	0	0	1	6052	854	30	2		2	FOXE3	1	47882467	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165167	47882467	201368154	115	18965										
SLC5A9	0	genome.wustl.edu	37	chr1	48705107	48705107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccggaggccagcagtgctGaaggacttccactacctgta	12	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	48705107	48705107	G	C	SNP	SLC5A9	ENST00000532322	human	ensembl	69_37n	1	known	missense	c.49	p.E17Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC5A9	HGNC	ENSG00000117834	146	0	0	138	39	22.03	-	-	-	C	48705107	G	C	48705107	3	2	240	1	0	0	0	0	1	0	0	0	14761	1277	45	2	1700	2	SLC5A9	1	48705107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	822640	48705107	200545514	116	18966										
FAF1	0	genome.wustl.edu	37	chr1	50907117	50907117	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accgctgggccgtgtttactCttttgcttcaaggaaaaggg	12	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	50907117	50907117	C	G	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	missense	c.1948	p.E650Q	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	49	0	0	46	16	25.81	-	-	-	G	50907117	C	G	50907117	3	3	240	1	0	0	0	0	1	0	0	0	5409	922	32	2	8	2	FAF1	1	50907117	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2202010	50907117	198343504	117	18967										
OSBPL9	0	genome.wustl.edu	37	chr1	52231525	52231525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaccaccgagtagcagtctCacttctccaagccacgtgaa	7	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	52231525	52231525	C	T	SNP	OSBPL9	ENST00000489990	human	ensembl	69_37n	1	known	missense	c.572	p.S191L	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon	OSBPL9	HGNC	ENSG00000117859	84	0	0	51	15	22.73	-	-	-	T	52231525	C	T	52231525	3	4	240	1	0	0	0	0	1	0	0	0	11357	813	29	2	960	2	OSBPL9	1	52231525	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1324408	52231525	197019096	118	18968										
OSBPL9	0	genome.wustl.edu	37	chr1	52249974	52249974	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actatgatgaacattacattCtcacattccccaatggctat	4	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	52249974	52249974	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	1	known	missense	c.1717	p.L573F	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	113	0	0	68	56	45.16	-	-	-	T	52249974	C	T	52249974	3	4	240	1	0	0	0	0	1	0	0	0	11357	913	32	2	1841	2	OSBPL9	1	52249974	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18449	52249974	197000647	119	18969										
NRD1	0	genome.wustl.edu	37	chr1	52299702	52299702	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttacctatcaagagcttCcttgaagtacttcctctgga	7	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	52299702	52299702	C	T	SNP	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	missense	c.1057	p.E353K	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	NRD1	HGNC	ENSG00000078618	49	0	0	43	13	23.21	-	-	-	T	52299702	C	T	52299702	3	4	240	1	0	0	0	0	1	0	0	0	10718	864	30	2	2714	2	NRD1	1	52299702	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	49728	52299702	196950919	120	18970										
ZFYVE9	0	genome.wustl.edu	37	chr1	52729509	52729509	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggacagaaaggaagctaGagtgtgtgtaatctgccatt	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	52729509	52729509	G	C	SNP	ZFYVE9	ENST00000287727	human	ensembl	69_37n	1	known	missense	c.2243	p.R748T	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	71	0	0	46	13	22.03	-	-	-	C	52729509	G	C	52729509	3	2	240	1	0	0	0	0	1	0	0	0	17767	942	33	2	2253	2	ZFYVE9	1	52729509	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	429807	52729509	196521112	121	18971										
CC2D1B	0	genome.wustl.edu	37	chr1	52824941	52824941	+	Frame_Shift_Del	DEL	A	A	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggggttgctgggacgtcAggggccatcactggctgcac							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	52824941	52824941	A	-	DEL	CC2D1B	ENST00000371586	human	ensembl	69_37n	-1	known	frame_shift_del	c.1107	p.D370fs	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1B	HGNC	ENSG00000154222	22	0	0	8	4	33.33	-	-	-	-	52824941	A	-	52824941	7	5	240	1	0	1	0	1	0	0	0	0	2752	175	7	0	1529	0	CC2D1B	1	52824941	Frame_Shift_Del	DEL	A	TCGA-AC-A23H-01A-11D-A159-09	95432	52824941	196425680	122	18972										
LRP8	0	genome.wustl.edu	37	chr1	53726154	53726154	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctcttggctgcttcagctCatggaagatgacaatgtcat	9	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	53726154	53726154	C	T	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.2038	p.E680K	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	95	0	0	77	33	30	-	-	-	T	53726154	C	T	53726154	3	4	240	1	0	0	0	0	1	0	0	0	9029	835	29	2	881	2	LRP8	1	53726154	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	901213	53726154	195524467	123	18973										
GLIS1	0	genome.wustl.edu	37	chr1	53972413	53972413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatggctgctgtggcagcGctgtggggcatgaggcctca	17	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	53972413	53972413	G	A	SNP	GLIS1	ENST00000312233	human	ensembl	69_37n	-1	known	missense	c.1742	p.A581V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332	28	0	0	21	9	30	-	-	-	A	53972413	G	A	53972413	3	1	240	1	0	0	0	0	1	0	0	0	6497	1087	38	1	124	1	GLIS1	1	53972413	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	246259	53972413	195278208	124	18974										
TMEM48	0	genome.wustl.edu	37	chr1	54233649	54233649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttatattacttaactattcTttgaactccaagaactgttg	4	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	54233649	54233649	T	G	SNP	TMEM48	ENST00000371429	human	ensembl	69_37n	-1	known	missense	c.2019	p.K673N	1.000	NULL	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	TMEM48	HGNC	ENSG00000058804	126	0	0	85	25	22.52	-	-	-	G	54233649	T	G	54233649	3	3	240	1	0	0	0	0	1	0	0	0	16267	1606	56	5	9	5	TMEM48	1	54233649	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	261236	54233649	195016972	125	18975										
LRRC42	0	genome.wustl.edu	37	chr1	54426066	54426066	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaggataattgtttatctGatgctggggtgcggaagatg	15	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	54426066	54426066	G	C	SNP	LRRC42	ENST00000319223	human	ensembl	69_37n	1	known	missense	c.643	p.D215H	1.000	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212	98	0	0	83	34	29.06	-	-	-	C	54426066	G	C	54426066	3	2	240	1	0	0	0	0	1	0	0	0	9066	1290	45	2	653	2	LRRC42	1	54426066	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192417	54426066	194824555	126	18976										
CYB5RL	0	genome.wustl.edu	37	chr1	54649921	54649921	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactcaacataccgggacatCagccccatctggtagcactg	9	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	54649921	54649921	C	T	SNP	CYB5RL	ENST00000419823	human	ensembl	69_37n	-1	known	silent	c.453	p.L151	0.997	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD-bd_dom,pfam_Oxidoreductase-like_N,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Phe_hydroxylase	-	no_errors	CYB5RL	HGNC	ENSG00000215883	44	0	0	43	10	18.87	-	-	-	T	54649921	C	T	54649921	2	4	240	1	0	0	0	0	0	0	0	1	4161	813	29	2		2	CYB5RL	1	54649921	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	223855	54649921	194600700	127	18977										
C1orf177	0	genome.wustl.edu	37	chr1	55277764	55277764	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttcttcaaaagcgaccttGagacatatgtggcacgatcc	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	55277764	55277764	G	T	SNP	C1orf177	ENST00000371273	human	ensembl	69_37n	1	known	nonsense	c.664	p.E222*	0.174	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398	57	0	0	36	14	28	-	-	-	T	55277764	G	T	55277764	4	4	240	1	0	0	0	0	0	1	0	0	2036	1291	45	2	686	2	C1orf177	1	55277764	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	627843	55277764	193972857	128	18978										
DHCR24	0	genome.wustl.edu	37	chr1	55331084	55331084	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttctccacatgcttaaaGaaccacggcttgtagtaatt	7	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	55331084	55331084	G	C	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.912	p.F304L	1.000	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	110	0	0	89	20	18.35	-	-	-	C	55331084	G	C	55331084	3	2	240	1	0	0	0	0	1	0	0	0	4512	933	33	2	654	2	DHCR24	1	55331084	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	53320	55331084	193919537	129	18979										
C1orf168	0	genome.wustl.edu	37	chr1	57192252	57192252	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacattttcagtttatcttCatctctgaggagaaatatat	5	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	57192252	57192252	C	T	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	missense	c.1798	p.E600K	0.799	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	146	1	0.68	73	17	18.89	-	-	-	T	57192252	C	T	57192252	3	4	240	1	0	0	0	0	1	0	0	0	2031	835	29	2	408	2	C1orf168	1	57192252	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1861168	57192252	192058369	130	18980										
C8B	0	genome.wustl.edu	37	chr1	57415299	57415299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgactactgatgccaagttCaaatattccaggtattttaa	6	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	57415299	57415299	C	T	SNP	C8B	ENST00000371237	human	ensembl	69_37n	-1	known	missense	c.793	p.E265K	1.000	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852	153	0	0	108	41	27.52	-	-	-	T	57415299	C	T	57415299	3	4	240	1	0	0	0	0	1	0	0	0	2440	835	29	2	1010	2	C8B	1	57415299	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	223047	57415299	191835322	131	18981										
C1orf87	0	genome.wustl.edu	37	chr1	60506693	60506693	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagagctgcctctcaccatCtgttccaaggaccagtctct	7	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	60506693	60506693	C	G	SNP	C1orf87	ENST00000371201	human	ensembl	69_37n	-1	known	missense	c.453	p.Q151H	0.504	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598	69	0	0	76	21	21.65	-	-	-	G	60506693	C	G	60506693	3	3	240	1	0	0	0	0	1	0	0	0	2084	912	32	2	1223	2	C1orf87	1	60506693	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3091394	60506693	188743928	132	18982										
INADL	0	genome.wustl.edu	37	chr1	62253532	62253532	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctaaggaactgtgggaattCagtcaggatgctcgttgcta	12	7	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	62253532	62253532	C	A	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	nonsense	c.956	p.S319*	0.265	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	50	0	0	32	6	15.79	-	-	-	A	62253532	C	A	62253532	4	1	240	1	0	0	0	0	0	1	0	0	7785	838	29	2	982	2	INADL	1	62253532	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1746839	62253532	186997089	133	18983										
ANGPTL3	0	genome.wustl.edu	37	chr1	63064463	63064463	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagcatagtcaaataaaaGaaatagaaaatcaggtaagt	7	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	63064463	63064463	G	C	SNP	ANGPTL3	ENST00000371129	human	ensembl	69_37n	1	known	missense	c.592	p.E198Q	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	129	0	0	91	20	18.02	-	-	-	C	63064463	G	C	63064463	3	2	240	1	0	0	0	0	1	0	0	0	615	943	33	2	598	2	ANGPTL3	1	63064463	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	810931	63064463	186186158	134	18984										
DOCK7	0	genome.wustl.edu	37	chr1	63085640	63085640	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaaggaatttgtagagatCttcatcacttaagcggtctc	9	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	63085640	63085640	C	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.1450	p.D484Y	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	60	0	0	31	7	18.42	-	-	-	A	63085640	C	A	63085640	3	1	240	1	0	0	0	0	1	0	0	0	4727	913	32	2	5027	2	DOCK7	1	63085640	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21177	63085640	186164981	135	18985										
EFCAB7	0	genome.wustl.edu	37	chr1	64011715	64011715	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaattaagccattaaacctGagtcaagttgaaggcaagtt	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	64011715	64011715	G	C	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	silent	c.933	p.L311	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	100	0	0	38	29	43.28	-	-	-	C	64011715	G	C	64011715	2	2	240	1	0	0	0	0	0	0	0	1	4975	1277	45	2		2	EFCAB7	1	64011715	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	926075	64011715	185238906	136	18986										
LEPR	0	genome.wustl.edu	37	chr1	66036405	66036405	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttcggagtgagcaagataGaaactgctccttatgtgcag	11	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	66036405	66036405	G	C	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	missense	c.290	p.R97T	0.969	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	89	0	0	50	14	21.88	-	-	-	C	66036405	G	C	66036405	3	2	240	1	0	0	0	0	1	0	0	0	8782	942	33	2	296	2	LEPR	1	66036405	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2024690	66036405	183214216	137	18987										
PDE4B	0	genome.wustl.edu	37	chr1	66798131	66798131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcggtggtagcggtgactCtgctatggacagcctgcagc	15	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	66798131	66798131	C	G	SNP	PDE4B	ENST00000371045	human	ensembl	69_37n	1	known	missense	c.59	p.S20C	0.240	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	88	0	0	55	12	17.91	-	-	-	G	66798131	C	G	66798131	3	3	240	1	0	0	0	0	1	0	0	0	11713	913	32	2	959	2	PDE4B	1	66798131	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	761726	66798131	182452490	138	18988										
PDE4B	0	genome.wustl.edu	37	chr1	66838181	66838181	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccagggtctgatggagaaGtttcagtttgaactgactct	12	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	66838181	66838181	G	C	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.2031	p.K677N	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	53	0	0	28	12	30	-	-	-	C	66838181	G	C	66838181	3	2	240	1	0	0	0	0	1	0	0	0	11713	1020	36	4	2451	4	PDE4B	1	66838181	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40050	66838181	182412440	139	18989										
IL12RB2	0	genome.wustl.edu	37	chr1	67861458	67861458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaagagctctccaagctGagagcagacaactggtggat	11	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	67861458	67861458	G	A	SNP	IL12RB2	ENST00000262345	human	ensembl	69_37n	1	known	missense	c.2275	p.E759K	0.062	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	51	0	0	37	17	31.48	-	-	-	A	67861458	G	A	67861458	3	1	240	1	0	0	0	0	1	0	0	0	7681	1291	45	2	2333	2	IL12RB2	1	67861458	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1023277	67861458	181389163	140	18990										
DEPDC1	0	genome.wustl.edu	37	chr1	68948474	68948474	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaggcactcagttgatttGaaggaattcaaattgtttaa	9	4	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	68948474	68948474	G	C	SNP	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	missense	c.1017	p.F339L	1.000	superfamily_Rho_GTPase_activation_prot	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	97	0	0	82	14	14.58	-	-	-	C	68948474	G	C	68948474	3	2	240	1	0	0	0	0	1	0	0	0	4475	1281	45	2	1438	2	DEPDC1	1	68948474	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1087016	68948474	180302147	141	18991										
C1orf173	0	genome.wustl.edu	37	chr1	75036953	75036953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcaattccctctctccctCccgtgataatcctaatcgga	4	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	75036953	75036953	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.4441	p.E1481K	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	68	0	0	64	17	20.99	-	-	-	T	75036953	C	T	75036953	3	4	240	1	0	0	0	0	1	0	0	0	2033	864	30	2	155	2	C1orf173	1	75036953	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6088479	75036953	174213668	142	18992										
C1orf173	0	genome.wustl.edu	37	chr1	75055630	75055630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcattttcactcagttcctGagaagatgaccttctggcac	7	11	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	75055630	75055630	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	nonsense	c.1861	p.Q621*	0.001	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	119	0	0	83	18	17.82	-	-	-	A	75055630	G	A	75055630	4	1	240	1	0	0	0	0	0	1	0	0	2033	1299	45	2	2743	2	C1orf173	1	75055630	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18677	75055630	174194991	143	18993										
CRYZ	0	genome.wustl.edu	37	chr1	75184934	75184934	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagtaaaatatggaatgccGatggcagctccttgtttaaa	10	7	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	75184934	75184934	G	A	SNP	CRYZ	ENST00000340866	human	ensembl	69_37n	-1	known	silent	c.387	p.I129	0.145	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZ	HGNC	ENSG00000116791	134	0	0	97	37	27.61	-	-	-	A	75184934	G	A	75184934	2	1	240	1	0	0	0	0	0	0	0	1	3952	1048	37	1		1	CRYZ	1	75184934	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	129304	75184934	174065687	144	18994										
MSH4	0	genome.wustl.edu	37	chr1	76280772	76280772	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggattagagtacattgaaCagttatgcatagcagaattc	9	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	76280772	76280772	C	A	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	missense	c.766	p.Q256K	1.000	pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	124	0	0	56	14	20	-	-	-	A	76280772	C	A	76280772	3	1	240	1	0	0	0	0	1	0	0	0	9944	479	17	4	784	4	MSH4	1	76280772	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1095838	76280772	172969849	145	18995										
ZZZ3	0	genome.wustl.edu	37	chr1	78097563	78097563	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtttcagtgccacatgatCtgattcaaagtaataaacat	7	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	78097563	78097563	C	G	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	missense	c.1477	p.D493H	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	99	0	0	52	22	29.73	-	-	-	G	78097563	C	G	78097563	3	3	240	1	0	0	0	0	1	0	0	0	18347	913	32	2	1278	2	ZZZ3	1	78097563	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1816791	78097563	171153058	146	18996										
FUBP1	0	genome.wustl.edu	37	chr1	78414917	78414917	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcttgttgtctataatactCagcccaggctgcactataat	7	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	78414917	78414917	C	G	SNP	FUBP1	ENST00000436586	human	ensembl	69_37n	-1	known	missense	c.1912	p.E638Q	1.000	pfam_DUF1897	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	109	0	0	62	11	15.07	-	-	-	G	78414917	C	G	78414917	3	3	240	1	0	0	0	0	1	0	0	0	6141	835	29	2	93	2	FUBP1	1	78414917	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	317354	78414917	170835704	147	18997										
ELTD1	0	genome.wustl.edu	37	chr1	79470885	79470885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttgagtataggaacaattCaacaaagtggaaaaaaccac	7	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	79470885	79470885	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	silent	c.42	p.L14	0.961	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	110	0	0	82	26	24.07	-	-	-	T	79470885	C	T	79470885	2	4	240	1	0	0	0	0	0	0	0	1	5121	825	29	2		2	ELTD1	1	79470885	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1055968	79470885	169779736	148	18998										
SPATA1	0	genome.wustl.edu	37	chr1	84988083	84988083	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatatttcagagtatctcctCaacttactttacgagccctg	5	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	84988083	84988083	C	G	SNP	SPATA1	ENST00000370638	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	96	0	0	44	11	20	-	-	-	G	84988083	C	G	84988083	1	3	240	0	1	0	0	0	0	0	0	0	15089	827	29	2		2	SPATA1	1	84988083	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5517198	84988083	164262538	149	18999										
SYDE2	0	genome.wustl.edu	37	chr1	85666146	85666146	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccggcggcctgaggaaggaGgggccttcctggcggtctcc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	85666146	85666146	G	-	DEL	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	frame_shift_del	c.534	p.S179fs	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	36	0	0	25	8	23.53	-	-	-	-	85666146	G	-	85666146	7	5	240	1	0	1	0	1	0	0	0	0	15528	987	35	0	3078	0	SYDE2	1	85666146	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	678063	85666146	163584475	150	19000										
C1orf52	0	genome.wustl.edu	37	chr1	85718298	85718298	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtttagcagtacagaaattCtggtcatttgtttctacttt	7	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	85718298	85718298	C	G	SNP	C1orf52	ENST00000294661	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf52	HGNC	ENSG00000162642	215	0	0	162	46	22.12	-	-	-	G	85718298	C	G	85718298	1	3	240	0	1	0	0	0	0	0	0	0	2064	928	32	2		2	C1orf52	1	85718298	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	52152	85718298	163532323	151	19001										
ODF2L	0	genome.wustl.edu	37	chr1	86848875	86848875	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatgctggataaattgtctCctgtctgagaaaagaatgtt	9	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	86848875	86848875	C	G	SNP	ODF2L	ENST00000317336	human	ensembl	69_37n	-1	known	missense	c.377	p.G126A	0.009	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417	86	0	0	70	9	11.39	-	-	-	G	86848875	C	G	86848875	3	3	240	1	0	0	0	0	1	0	0	0	10901	855	30	2	1765	2	ODF2L	1	86848875	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1130577	86848875	162401746	152	19002										
ODF2L	0	genome.wustl.edu	37	chr1	86851146	86851146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcataagtcactcacattttCaaaattaatcttttcaatgg	3	8	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	86851146	86851146	C	G	SNP	ODF2L	ENST00000317336	human	ensembl	69_37n	-1	known	missense	c.241	p.E81Q	0.999	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417	114	0	0	69	23	25	-	-	-	G	86851146	C	G	86851146	3	3	240	1	0	0	0	0	1	0	0	0	10901	835	29	2	1909	2	ODF2L	1	86851146	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2271	86851146	162399475	153	19003										
CLCA2	0	genome.wustl.edu	37	chr1	86896607	86896607	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttcgatgagtataacaatGacaaacctttctacataaat	5	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	86896607	86896607	G	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	missense	c.538	p.D180N	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	127	0	0	69	15	17.86	-	-	-	A	86896607	G	A	86896607	3	1	240	1	0	0	0	0	1	0	0	0	3488	1290	45	2	552	2	CLCA2	1	86896607	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45461	86896607	162354014	154	19004										
CLCA2	0	genome.wustl.edu	37	chr1	86913346	86913346	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattttcctcatcctgtgatGatttatgccaatgtgaaaca	6	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	86913346	86913346	G	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	missense	c.1869	p.M623I	0.892	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	83	0	0	71	24	25.26	-	-	-	A	86913346	G	A	86913346	3	1	240	1	0	0	0	0	1	0	0	0	3488	1290	45	2	1911	2	CLCA2	1	86913346	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16739	86913346	162337275	155	19005										
CLCA1	0	genome.wustl.edu	37	chr1	86951097	86951097	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaatcaaaaatgcaatctCcgaagcacatgggaagtgat	8	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	86951097	86951097	C	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	silent	c.807	p.L269	1.000	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	107	0	0	81	24	22.86	-	-	-	T	86951097	C	T	86951097	2	4	240	1	0	0	0	0	0	0	0	1	3487	842	30	2		2	CLCA1	1	86951097	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37751	86951097	162299524	156	19006										
SH3GLB1	0	genome.wustl.edu	37	chr1	87208822	87208822	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttgcaggtgatcactgtGttcagtgttgttggaatgga	13	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	87208822	87208822	G	C	SNP	SH3GLB1	ENST00000482504	human	ensembl	69_37n	1	known	silent	c.1065	p.V355	0.997	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033	183	0	0	110	37	25.17	-	-	-	C	87208822	G	C	87208822	2	2	240	1	0	0	0	0	0	0	0	1	14342	1364	48	4		4	SH3GLB1	1	87208822	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	257725	87208822	162041799	157	19007										
GBP6	0	genome.wustl.edu	37	chr1	89848300	89848300	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatactgccaggctaaactCaatgagctctcaaagggact	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	89848300	89848300	C	G	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	silent	c.1230	p.L410	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	69	0	0	47	19	28.79	-	-	-	G	89848300	C	G	89848300	2	3	240	1	0	0	0	0	0	0	0	1	6328	813	29	2		2	GBP6	1	89848300	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2639478	89848300	159402321	158	19008										
ZNF644	0	genome.wustl.edu	37	chr1	91403267	91403267	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcagttctggttttgtttCatcatattcatttaagaaat	8	5	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	91403267	91403267	C	T	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.3463	p.E1155K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	94	0	0	66	26	28.26	-	-	-	T	91403267	C	T	91403267	3	4	240	1	0	0	0	0	1	0	0	0	18156	835	29	2	532	2	ZNF644	1	91403267	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1554967	91403267	157847354	159	19009										
BRDT	0	genome.wustl.edu	37	chr1	92442614	92442614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtaggttacaaaaggtgtGaagaggaaagcagatacaac	12	4	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	92442614	92442614	G	A	SNP	BRDT	ENST00000362005	human	ensembl	69_37n	1	known	silent	c.633	p.V211	0.998	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	57	0	0	34	8	19.05	-	-	-	A	92442614	G	A	92442614	2	1	240	1	0	0	0	0	0	0	0	1	1516	1277	45	2		2	BRDT	1	92442614	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1039347	92442614	156808007	160	19010										
GLMN	0	genome.wustl.edu	37	chr1	92752094	92752094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatcatttccaccttcttCagactgttcaaagaattgtg	7	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	92752094	92752094	C	T	SNP	GLMN	ENST00000370360	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	1.000	pfam_YAP-bd/Alf4/glomulin	pfam_YAP-bd/Alf4/glomulin	-	no_errors	GLMN	HGNC	ENSG00000174842	99	0	0	56	22	28.21	-	-	-	T	92752094	C	T	92752094	3	4	240	1	0	0	0	0	1	0	0	0	6500	835	29	2	1148	2	GLMN	1	92752094	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	309480	92752094	156498527	161	19011										
RPL5	0	genome.wustl.edu	37	chr1	93301752	93301752	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtttcttgaatagcttctCaataggtttggcatggacaa	10	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	93301752	93301752	C	G	SNP	RPL5	ENST00000370321	human	ensembl	69_37n	1	known	silent	c.330	p.L110	0.903	pfam_Ribosomal_L18/L5	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	-	no_errors	RPL5	HGNC	ENSG00000122406	83	0	0	63	24	27.59	-	-	-	G	93301752	C	G	93301752	2	3	240	1	0	0	0	0	0	0	0	1	13683	813	29	2		2	RPL5	1	93301752	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	549658	93301752	155948869	162	19012										
CCDC18	0	genome.wustl.edu	37	chr1	93722092	93722092	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaagcaactctctaaagaGaaagtaatccctattttaaa	5	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	93722092	93722092	G	A	SNP	CCDC18	ENST00000370276	human	ensembl	69_37n	1	novel	missense	c.3701	p.R1234K	0.980	NULL	superfamily_Prefoldin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC18	HGNC	ENSG00000122483	40	0	0	28	6	17.65	-	-	-	A	93722092	G	A	93722092	3	1	240	1	0	0	0	0	1	0	0	0	2820	933	33	2	3995	2	CCDC18	1	93722092	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	420340	93722092	155528529	163	19013										
BCAR3	0	genome.wustl.edu	37	chr1	94033396	94033396	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagcagtccacgtcttttCtaaccttgtgatctggaaga	9	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	94033396	94033396	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	125	0	0	89	39	30.47	-	-	-	T	94033396	C	T	94033396	3	4	240	1	0	0	0	0	1	0	0	0	1353	922	32	2	502	2	BCAR3	1	94033396	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	311304	94033396	155217225	164	19014										
DNTTIP2	0	genome.wustl.edu	37	chr1	94342230	94342230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatagtttggtatcacattCaaaatctacattcccttcac	4	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	94342230	94342230	C	G	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	missense	c.1261	p.E421Q	0.034	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	117	0	0	79	77	49.36	-	-	-	G	94342230	C	G	94342230	3	3	240	1	0	0	0	0	1	0	0	0	4717	835	29	2	1033	2	DNTTIP2	1	94342230	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	308834	94342230	154908391	165	19015										
ABCA4	0	genome.wustl.edu	37	chr1	94480237	94480237	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgggtacatcatgggaatGaccgcccatctgtgtgaaat	12	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	94480237	94480237	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.5322	p.V1774	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	50	0	0	42	11	20.75	-	-	-	A	94480237	G	A	94480237	2	1	240	1	0	0	0	0	0	0	0	1	34	1277	45	2		2	ABCA4	1	94480237	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	138007	94480237	154770384	166	19016										
ARHGAP29	0	genome.wustl.edu	37	chr1	94643593	94643593	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaactctaccaagcgtgcttGatttgaatactctgcaaggg	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	94643593	94643593	G	C	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.2611	p.Q871E	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	66	0	0	71	18	20.22	-	-	-	C	94643593	G	C	94643593	3	2	240	1	0	0	0	0	1	0	0	0	880	1299	45	2	1186	2	ARHGAP29	1	94643593	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	163356	94643593	154607028	167	19017										
TMEM56	0	genome.wustl.edu	37	chr1	95609499	95609499	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcagtgttacctgtatCagctttttcacctttcagct	5	12	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	95609499	95609499	C	G	SNP	TMEM56	ENST00000370203	human	ensembl	69_37n	1	known	missense	c.42	p.I14M	0.992	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM56	HGNC	ENSG00000152078	182	0	0	121	34	21.94	-	-	-	G	95609499	C	G	95609499	3	3	240	1	0	0	0	0	1	0	0	0	16278	816	29	2	44	2	TMEM56	1	95609499	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	965906	95609499	153641122	168	19018										
DPYD	0	genome.wustl.edu	37	chr1	97770898	97770898	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttaatcccatcagacctGagacagtgttggtggctgta	10	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	97770898	97770898	G	C	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	nonsense	c.2216	p.S739*	1.000	pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	110	0	0	74	32	30.19	-	-	-	C	97770898	G	C	97770898	4	2	240	1	0	0	0	0	0	1	0	0	4780	1294	45	2	885	2	DPYD	1	97770898	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2161399	97770898	151479723	169	19019										
LPPR5	0	genome.wustl.edu	37	chr1	99387467	99387467	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctatagatattccaaccaGaaagcctgctataacatctg	6	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	99387467	99387467	G	T	SNP	LPPR5	ENST00000263177	human	ensembl	69_37n	-1	known	missense	c.769	p.L257M	0.999	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Clone_based_vega_gene	ENSG00000117598	89	0	0	77	31	28.7	-	-	-	T	99387467	G	T	99387467	3	4	240	1	0	0	0	0	1	0	0	0	8994	933	33	2	208	2	LPPR5	1	99387467	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1616569	99387467	149863154	170	19020										
COL11A1	0	genome.wustl.edu	37	chr1	103380321	103380321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctggaggtccagcagctCcaggtggaccagcttcccct	11	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	103380321	103380321	C	G	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.3899	p.G1300A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	48	0	0	25	16	39.02	-	-	-	G	103380321	C	G	103380321	3	3	240	1	0	0	0	0	1	0	0	0	3697	855	30	2	1625	2	COL11A1	1	103380321	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3992854	103380321	145870300	171	19021										
COL11A1	0	genome.wustl.edu	37	chr1	103461552	103461552	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttaacgttacctttactCcccgggggcccgggtatcca	9	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	103461552	103461552	C	G	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.2324	p.G775A	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	26	0	0	21	9	30	-	-	-	G	103461552	C	G	103461552	3	3	240	1	0	0	0	0	1	0	0	0	3697	855	30	2	3296	2	COL11A1	1	103461552	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	81231	103461552	145789069	172	19022										
AMY2A	0	genome.wustl.edu	37	chr1	104163236	104163236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggtaatggccgggtgacaGaattcaagtatggtgcaaaa	13	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	104163236	104163236	G	T	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	1	known	nonsense	c.808	p.E270*	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	204	0	0	115	22	16.06	-	-	-	T	104163236	G	T	104163236	4	4	240	1	0	0	0	0	0	1	0	0	594	943	33	2	826	2	AMY2A	1	104163236	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	701684	104163236	145087385	173	19023										
STXBP3	0	genome.wustl.edu	37	chr1	109294878	109294878	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcctttcttttttaaacaGagataaaagcaacagtgttt	5	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109294878	109294878	G	A	SNP	STXBP3	ENST00000370008	human	ensembl	69_37n	1	known	splice_site	c.50-1	e2-1	1.000	-	-	-	no_errors	STXBP3	HGNC	ENSG00000116266	150	0	0	108	36	25	-	-	-	A	109294878	G	A	109294878	5	1	240	1	0	0	0	0	0	0	1	0	15445	956	33	2	55	2	STXBP3	1	109294878	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5131642	109294878	139955743	174	19024										
AKNAD1	0	genome.wustl.edu	37	chr1	109359767	109359767	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagggtgttgcagggtctGagctgtaggtcatgaaagcc	17	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109359767	109359767	G	C	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	nonsense	c.2282	p.S761*	0.007	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	165	0	0	137	31	18.45	-	-	-	C	109359767	G	C	109359767	4	2	240	1	0	0	0	0	0	1	0	0	464	1294	45	2	236	2	AKNAD1	1	109359767	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64889	109359767	139890854	175	19025										
AKNAD1	0	genome.wustl.edu	37	chr1	109365776	109365776	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taactttcaaagtccttggtCactgcgatttcatattttcc	5	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109365776	109365776	C	T	SNP	AKNAD1	ENST00000369995	human	ensembl	69_37n	-1	known	silent	c.2285	p.*762	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	16	0	0	22	8	26.67	-	-	-	T	109365776	C	T	109365776	2	4	240	1	0	0	0	0	0	0	0	1	464	841	29	2		2	AKNAD1	1	109365776	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6009	109365776	139884845	176	19026										
AKNAD1	0	genome.wustl.edu	37	chr1	109380248	109380248	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacaggaagggaaggagctGaagtatatttgctttcatcc	11	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109380248	109380248	G	C	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	nonsense	c.1460	p.S487*	0.001	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	142	0	0	99	29	22.66	-	-	-	C	109380248	G	C	109380248	4	2	240	1	0	0	0	0	0	1	0	0	464	1294	45	2	1090	2	AKNAD1	1	109380248	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14472	109380248	139870373	177	19027										
AKNAD1	0	genome.wustl.edu	37	chr1	109394986	109394986	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacttagaagcgtctccttCatttgctggaatatgaagag	10	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109394986	109394986	C	A	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	nonsense	c.301	p.E101*	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	85	0	0	57	23	28.75	-	-	-	A	109394986	C	A	109394986	4	1	240	1	0	0	0	0	0	1	0	0	464	835	29	2	2269	2	AKNAD1	1	109394986	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14738	109394986	139855635	178	19028										
GPSM2	0	genome.wustl.edu	37	chr1	109446798	109446798	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacttaatctctcagaccttCaaatggttcttggtctgagc	8	10	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109446798	109446798	C	G	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.1114	p.Q372E	1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	87	0	0	58	23	28.4	-	-	-	G	109446798	C	G	109446798	3	3	240	1	0	0	0	0	1	0	0	0	6786	827	29	2	1148	2	GPSM2	1	109446798	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51812	109446798	139803823	179	19029										
CELSR2	0	genome.wustl.edu	37	chr1	109795708	109795708	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggccacgtcagctcctCtggtgagccgggctacagtc	12	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109795708	109795708	C	G	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.3007	p.L1003V	0.621	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	44	0	0	28	17	37.78	-	-	-	G	109795708	C	G	109795708	3	3	240	1	0	0	0	0	1	0	0	0	3251	912	32	2	3009	2	CELSR2	1	109795708	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	348910	109795708	139454913	180	19030										
CELSR2	0	genome.wustl.edu	37	chr1	109803737	109803737	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaatgggggcacctgtgtCaacctgctggtgggcggttt	16	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109803737	109803737	C	G	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.4032	p.V1344	1.000	smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	36	0	0	37	16	30.19	-	-	-	G	109803737	C	G	109803737	2	3	240	1	0	0	0	0	0	0	0	1	3251	813	29	2		2	CELSR2	1	109803737	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8029	109803737	139446884	181	19031										
CELSR2	0	genome.wustl.edu	37	chr1	109804503	109804503	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtggcatacggtgcagctGaaatactacaataaggtggg	13	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109804503	109804503	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.4371	p.L1457	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	56	0	0	47	40	45.98	-	-	-	A	109804503	G	A	109804503	2	1	240	1	0	0	0	0	0	0	0	1	3251	1277	45	2		2	CELSR2	1	109804503	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	766	109804503	139446118	182	19032										
CELSR2	0	genome.wustl.edu	37	chr1	109804950	109804950	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccacagggcccatcagaGcagaaggtggctgtggtgac	14	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109804950	109804950	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.4428	p.E1476D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	51	0	0	31	34	52.31	-	-	-	C	109804950	G	C	109804950	3	2	240	1	0	0	0	0	1	0	0	0	3251	962	34	4	4450	4	CELSR2	1	109804950	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	447	109804950	139445671	183	19033										
MYBPHL	0	genome.wustl.edu	37	chr1	109849538	109849538	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtgaagcctggggtggttCagcatccgctgggctggctt	17	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109849538	109849538	C	T	SNP	MYBPHL	ENST00000357155	human	ensembl	69_37n	-1	known	missense	c.76	p.E26K	0.001	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPHL	HGNC	ENSG00000221986	26	0	0	16	6	27.27	-	-	-	T	109849538	C	T	109849538	3	4	240	1	0	0	0	0	1	0	0	0	10087	835	29	2	1020	2	MYBPHL	1	109849538	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44588	109849538	139401083	184	19034										
PSMA5	0	genome.wustl.edu	37	chr1	109957929	109957929	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtggggaagtaattctcttCtccacagctaggcacacacc	9	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	109957929	109957929	C	T	SNP	PSMA5	ENST00000271308	human	ensembl	69_37n	-1	known	silent	c.153	p.E51	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA5	HGNC	ENSG00000143106	80	0	0	46	41	47.13	-	-	-	T	109957929	C	T	109957929	2	4	240	1	0	0	0	0	0	0	0	1	12750	912	32	2		2	PSMA5	1	109957929	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	108391	109957929	139292692	185	19035										
KCNC4	0	genome.wustl.edu	37	chr1	110765684	110765684	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgaccgcaacgtgacagaGatcctccgcgtagggaacat	11	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	110765684	110765684	G	T	SNP	KCNC4	ENST00000369787	human	ensembl	69_37n	1	known	missense	c.777	p.E259D	0.946	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396	71	0	0	75	25	25	-	-	-	T	110765684	G	T	110765684	3	4	240	1	0	0	0	0	1	0	0	0	8071	933	33	2	783	2	KCNC4	1	110765684	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	807755	110765684	138484937	186	19036										
RBM15	0	genome.wustl.edu	37	chr1	110884645	110884645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctgacagccggtcctcctCttcctcagctgcatcagaca	7	16	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	110884645	110884645	C	G	SNP	RBM15	ENST00000369784	human	ensembl	69_37n	1	known	missense	c.2618	p.S873C	0.613	pfam_SPOC_C,superfamily_SPOC-like,pfscan_SPOC_met	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	71	0	0	49	17	25.76	-	-	-	G	110884645	C	G	110884645	3	3	240	1	0	0	0	0	1	0	0	0	13199	913	32	2	2620	2	RBM15	1	110884645	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118961	110884645	138365976	187	19037										
KCNA2	0	genome.wustl.edu	37	chr1	111146715	111146715	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattcaaaggagaaccagatGatgcagagtgtctctacaat	9	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	111146715	111146715	G	A	SNP	KCNA2	ENST00000316361	human	ensembl	69_37n	-1	known	silent	c.690	p.I230	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301	96	0	0	83	33	28.45	-	-	-	A	111146715	G	A	111146715	2	1	240	1	0	0	0	0	0	0	0	1	8057	1280	45	2		2	KCNA2	1	111146715	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	262070	111146715	138103906	188	19038										
KCNA3	0	genome.wustl.edu	37	chr1	111215866	111215866	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactccgacttactcagagtCgagttactccttgcttttcg	7	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	111215866	111215866	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	69_37n	-1	known	silent	c.1566	p.S522	0.976	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272	63	0	0	56	12	17.65	-	-	-	T	111215866	C	T	111215866	2	4	240	1	0	0	0	0	0	0	0	1	8058	871	31	1		1	KCNA3	1	111215866	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69151	111215866	138034755	189	19039										
CD53	0	genome.wustl.edu	37	chr1	111437020	111437020	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctctttgtatatgaacaGaaggtaagttataaagacaa	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	111437020	111437020	G	C	SNP	CD53	ENST00000271324	human	ensembl	69_37n	1	known	missense	c.324	p.Q108H	0.997	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD53	HGNC	ENSG00000143119	175	0	0	132	53	28.65	-	-	-	C	111437020	G	C	111437020	3	2	240	1	0	0	0	0	1	0	0	0	3052	933	33	2	334	2	CD53	1	111437020	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	221154	111437020	137813601	190	19040										
KCND3	0	genome.wustl.edu	37	chr1	112323333	112323333	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagctccagcgcctcgttGaggagcccgttgcgcttgct	13	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	112323333	112323333	G	C	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	silent	c.1350	p.L450	1.000	pfam_K_chnl_volt-dep_Kv4_C,prints_K_chnl_volt-dep_Kv4.3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	47	0	0	52	21	28.77	-	-	-	C	112323333	G	C	112323333	2	2	240	1	0	0	0	0	0	0	0	1	8074	1277	45	2		2	KCND3	1	112323333	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	886313	112323333	136927288	191	19041										
MOV10	0	genome.wustl.edu	37	chr1	113236789	113236789	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtgtcaagctgagcttttcCatgaggtgggtgttggggga	17	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	113236789	113236789	C	G	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	silent	c.1290	p.S430	0.000	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	97	0	0	81	17	17.35	-	-	-	G	113236789	C	G	113236789	2	3	240	1	0	0	0	0	0	0	0	1	9790	581	21	4		4	MOV10	1	113236789	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	913456	113236789	136013832	192	19042										
SLC16A1	0	genome.wustl.edu	37	chr1	113460021	113460021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactccatttgcaacaacgGaagccgcaaagaaatactga	7	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	113460021	113460021	G	A	SNP	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	missense	c.1007	p.S336F	0.995	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	34	0	0	29	11	27.5	-	-	-	A	113460021	G	A	113460021	3	1	240	1	0	0	0	0	1	0	0	0	14491	1174	41	2	503	2	SLC16A1	1	113460021	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	223232	113460021	135790600	193	19043										
LRIG2	0	genome.wustl.edu	37	chr1	113655244	113655244	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgactttcctgcggctcgaGaaagacgcatgcacgtcatg	11	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	113655244	113655244	G	A	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	missense	c.1942	p.E648K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	64	0	0	59	23	28.05	-	-	-	A	113655244	G	A	113655244	3	1	240	1	0	0	0	0	1	0	0	0	9011	943	33	2	1996	2	LRIG2	1	113655244	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	195223	113655244	135595377	194	19044										
LRIG2	0	genome.wustl.edu	37	chr1	113657369	113657369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagcattgggcatgaagatGatggctggaccacagttggc	15	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	113657369	113657369	G	C	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	missense	c.2401	p.D801H	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	130	0	0	123	40	24.54	-	-	-	C	113657369	G	C	113657369	3	2	240	1	0	0	0	0	1	0	0	0	9011	1290	45	2	2459	2	LRIG2	1	113657369	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2125	113657369	135593252	195	19045										
MAGI3	0	genome.wustl.edu	37	chr1	114224865	114224865	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccggtctgtgctcctacgtGaaacccgagcaacattaagg	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114224865	114224865	G	A	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	silent	c.3360	p.V1120	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	163	0	0	118	48	28.92	-	-	-	A	114224865	G	A	114224865	2	1	240	1	0	0	0	0	0	0	0	1	9263	1277	45	2		2	MAGI3	1	114224865	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	567496	114224865	135025756	196	19046										
PTPN22	0	genome.wustl.edu	37	chr1	114402066	114402066	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtctgccttgtacttggtaGattgccttttcagcttctgt	9	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114402066	114402066	G	T	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.104	p.S35Y	0.997	smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	161	0	0	103	34	24.82	-	-	-	T	114402066	G	T	114402066	3	4	240	1	0	0	0	0	1	0	0	0	12870	942	33	2	2422	2	PTPN22	1	114402066	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	177201	114402066	134848555	197	19047										
AP4B1	0	genome.wustl.edu	37	chr1	114447279	114447279	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcctatcagcttgaatgtGaggattgcacagagccttct	10	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114447279	114447279	G	A	SNP	AP4B1	ENST00000256658	human	ensembl	69_37n	-1	known	missense	c.61	p.H21Y	1.000	superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu	-	no_errors	AP4B1	HGNC	ENSG00000134262	66	0	0	57	14	19.72	-	-	-	A	114447279	G	A	114447279	3	1	240	1	0	0	0	0	1	0	0	0	752	1290	45	2	2198	2	AP4B1	1	114447279	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45213	114447279	134803342	198	19048										
HIPK1	0	genome.wustl.edu	37	chr1	114515946	114515946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcagcctataccactcacCctagcactttggtgcaccag	7	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114515946	114515946	C	G	SNP	HIPK1	ENST00000369558	human	ensembl	69_37n	1	known	missense	c.3445	p.P1149A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349	92	0	0	87	25	22.32	-	-	-	G	114515946	C	G	114515946	3	3	240	1	0	0	0	0	1	0	0	0	7167	623	22	4	3605	4	HIPK1	1	114515946	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68667	114515946	134734675	199	19049										
SYT6	0	genome.wustl.edu	37	chr1	114640428	114640428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtatgccagcatctcgttcCagtggtccctgcccaggcct	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114640428	114640428	C	A	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	missense	c.1436	p.W479L	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	62	0	0	66	19	22.35	-	-	-	A	114640428	C	A	114640428	3	1	240	1	0	0	0	0	1	0	0	0	15570	595	21	4	104	4	SYT6	1	114640428	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	124482	114640428	134610193	200	19050										
SYT6	0	genome.wustl.edu	37	chr1	114640500	114640500	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatctcattgtggcccactCtgagggagaaacaaaagtcc	10	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	114640500	114640500	C	G	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	splice_site	c.1365-1	e6-1	1.000	-	-	-	no_errors	SYT6	HGNC	ENSG00000134207	47	0	0	40	16	28.07	-	-	-	G	114640500	C	G	114640500	5	3	240	1	0	0	0	0	0	0	1	0	15570	927	32	2	176	2	SYT6	1	114640500	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72	114640500	134610121	201	19051										
AMPD1	0	genome.wustl.edu	37	chr1	115220585	115220585	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taattgtctgtcttcaagtaGaggtcccgtagctcacttgc	9	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	115220585	115220585	G	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	silent	c.1269	p.L423	0.999	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	95	0	0	73	15	17.05	-	-	-	C	115220585	G	C	115220585	2	2	240	1	0	0	0	0	0	0	0	1	585	929	33	2		2	AMPD1	1	115220585	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	580085	115220585	134030036	202	19052										
SYCP1	0	genome.wustl.edu	37	chr1	115419390	115419390	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaaaaaatccaacaccttGaacaagaatacaagaaggaa	6	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	115419390	115419390	G	A	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.760	p.E254K	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	45	0	0	36	12	25	-	-	-	A	115419390	G	A	115419390	3	1	240	1	0	0	0	0	1	0	0	0	15523	1291	45	2	798	2	SYCP1	1	115419390	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	198805	115419390	133831231	203	19053										
SYCP1	0	genome.wustl.edu	37	chr1	115428913	115428913	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagcttggaagaattattGagaacagaacagcaaaggta	11	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	115428913	115428913	G	A	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	silent	c.1173	p.L391	0.400	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	89	0	0	67	14	17.07	-	-	-	A	115428913	G	A	115428913	2	1	240	1	0	0	0	0	0	0	0	1	15523	1281	45	2		2	SYCP1	1	115428913	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9523	115428913	133821708	204	19054										
TSHB	0	genome.wustl.edu	37	chr1	115576828	115576828	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaacctcagaagtcttatCtggtaggattttctgtctaa	7	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	115576828	115576828	C	T	SNP	TSHB	ENST00000256592	human	ensembl	69_37n	1	known	silent	c.397	p.L133	0.000	NULL	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	TSHB	HGNC	ENSG00000134200	73	0	0	64	18	21.95	-	-	-	T	115576828	C	T	115576828	2	4	240	1	0	0	0	0	0	0	0	1	16717	912	32	2		2	TSHB	1	115576828	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	147915	115576828	133673793	205	19055										
ATP1A1	0	genome.wustl.edu	37	chr1	116929934	116929934	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taacatctgctcgtgcagctGagatcctggcgcgagatggt	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	116929934	116929934	G	C	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.208	p.E70Q	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	81	0	0	62	15	19.48	-	-	-	C	116929934	G	C	116929934	3	2	240	1	0	0	0	0	1	0	0	0	1132	1291	45	2	238	2	ATP1A1	1	116929934	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1353106	116929934	132320687	206	19056										
IGSF3	0	genome.wustl.edu	37	chr1	117122183	117122183	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaccggggagagcctctgGaagcgaagcctgccctccca	13	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	117122183	117122183	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	silent	c.3225	p.F1075	0.994	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	27	0	0	31	6	16.22	-	-	-	A	117122183	G	A	117122183	2	1	240	1	0	0	0	0	0	0	0	1	7655	1165	41	2		2	IGSF3	1	117122183	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192249	117122183	132128438	207	19057										
CD101	0	genome.wustl.edu	37	chr1	117556285	117556285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctctctcaagatcttctctCtgggcccagaggatgaaggc	10	12	5	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	117556285	117556285	C	G	SNP	CD101	ENST00000256652	human	ensembl	69_37n	1	known	missense	c.1099	p.L367V	0.190	smart_Ig_V-set_subgr,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD101	HGNC	ENSG00000134256	73	0	0	55	29	34.52	-	-	-	G	117556285	C	G	117556285	3	3	240	1	0	0	0	0	1	0	0	0	2991	912	32	2	1113	2	CD101	1	117556285	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	434102	117556285	131694336	208	19058										
MAN1A2	0	genome.wustl.edu	37	chr1	117910925	117910925	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgagaagtttattcttctCcttattcttagtgccttcat	5	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	117910925	117910925	C	G	SNP	MAN1A2	ENST00000356554	human	ensembl	69_37n	1	known	silent	c.120	p.L40	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162	114	0	0	71	23	24.47	-	-	-	G	117910925	C	G	117910925	2	3	240	1	0	0	0	0	0	0	0	1	9282	842	30	2		2	MAN1A2	1	117910925	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	354640	117910925	131339696	209	19059										
MAN1A2	0	genome.wustl.edu	37	chr1	118035768	118035768	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgttttctcctttgttacaGatcatacatctgtcggtggc	8	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	118035768	118035768	G	T	SNP	MAN1A2	ENST00000356554	human	ensembl	69_37n	1	known	splice_site	c.1169-1	e9-1	1.000	-	-	-	no_errors	MAN1A2	HGNC	ENSG00000198162	122	0	0	90	14	13.46	-	-	-	T	118035768	G	T	118035768	5	4	240	1	0	0	0	0	0	0	1	0	9282	956	33	2	1202	2	MAN1A2	1	118035768	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	124843	118035768	131214853	210	19060										
NOTCH2	0	genome.wustl.edu	37	chr1	120458354	120458354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcagggggcccgcaacagCtggagggcaggtggactgag	21	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	120458354	120458354	C	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.6991	p.A2331S	0.013	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	22	0	0	30	16	34.78	-	-	-	A	120458354	C	A	120458354	3	1	240	1	0	0	0	0	1	0	0	0	10620	797	28	4	428	4	NOTCH2	1	120458354	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2422586	120458354	128792267	211	19061										
PPIAL4G	0	genome.wustl.edu	37	chr1	143767710	143767710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagcaggaacccttataacGaaatcctttctctccagtgc	6	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	143767710	143767710	G	A	SNP	PPIAL4G	ENST00000419275	human	ensembl	69_37n	-1	known	missense	c.139	p.R47C	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334	246	0	0	266	38	12.46	-	-	-	A	143767710	G	A	143767710	3	1	240	1	0	0	0	0	1	0	0	0	12395	1058	37	1	359	1	PPIAL4G	1	143767710	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23309356	143767710	105482911	212	19062										
PDE4DIP	0	genome.wustl.edu	37	chr1	144873981	144873981	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgagatgcactggttgatGatggtttagaagacaacaca	11	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	144873981	144873981	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	nonsense	c.4976	p.S1659*	0.991	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	179	0	0	149	47	23.98	-	-	-	T	144873981	G	T	144873981	4	4	240	1	0	0	0	0	0	1	0	0	11716	1294	45	2	2120	2	PDE4DIP	1	144873981	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1106271	144873981	104376640	213	19063										
PDE4DIP	0	genome.wustl.edu	37	chr1	144874746	144874746	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctgactatgtccatgtcaGagcaggcttccagttcatca	9	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	144874746	144874746	G	C	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.4862	p.S1621C	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	197	0	0	192	63	24.71	-	-	-	C	144874746	G	C	144874746	3	2	240	1	0	0	0	0	1	0	0	0	11716	942	33	2	2238	2	PDE4DIP	1	144874746	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	765	144874746	104375875	214	19064										
PDE4DIP	0	genome.wustl.edu	37	chr1	144877067	144877067	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgctggtgagcctctctgtCagctggcttccctgggcgag	14	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	144877067	144877067	C	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	silent	c.4620	p.L1540	0.998	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	132	0	0	103	17	14.17	-	-	-	G	144877067	C	G	144877067	2	3	240	1	0	0	0	0	0	0	0	1	11716	813	29	2		2	PDE4DIP	1	144877067	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2321	144877067	104373554	215	19065										
PDE4DIP	0	genome.wustl.edu	37	chr1	144922617	144922617	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttagttcatagctcatttCattaagtttctcttgaagaa	5	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	144922617	144922617	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.790	p.E264K	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	184	0	0	172	23	11.79	-	-	-	T	144922617	C	T	144922617	3	4	240	1	0	0	0	0	1	0	0	0	11716	835	29	2	6412	2	PDE4DIP	1	144922617	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45550	144922617	104328004	216	19066										
PDE4DIP	0	genome.wustl.edu	37	chr1	144955253	144955253	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtttcttgtcctggagttCtcgtttcaagctctccactt	7	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	144955253	144955253	C	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.181	p.E61Q	1.000	pfam_Spindle_assoc	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	262	0	0	248	58	18.89	-	-	-	G	144955253	C	G	144955253	3	3	240	1	0	0	0	0	1	0	0	0	11716	922	32	2	8174	2	PDE4DIP	1	144955253	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32636	144955253	104295368	217	19067										
TXNIP	0	genome.wustl.edu	37	chr1	145438808	145438808	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactcagttccatcatggtGatgttcaagaagatcaagtc	8	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	145438808	145438808	G	T	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	1	known	silent	c.6	p.V2	1.000	NULL	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	59	0	0	73	20	21.51	-	-	-	T	145438808	G	T	145438808	2	4	240	1	0	0	0	0	0	0	0	1	16900	1277	45	2		2	TXNIP	1	145438808	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	483555	145438808	103811813	218	19068										
PEX11B	0	genome.wustl.edu	37	chr1	145518073	145518073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctaatctccacaagttCtacgcctgggtaactcagca	6	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	145518073	145518073	C	G	SNP	PEX11B	ENST00000369306	human	ensembl	69_37n	1	known	missense	c.175	p.L59V	0.999	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	124	0	0	130	23	15.03	-	-	-	G	145518073	C	G	145518073	3	3	240	1	0	0	0	0	1	0	0	0	11812	912	32	2	203	2	PEX11B	1	145518073	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	79265	145518073	103732548	219	19069										
ITGA10	0	genome.wustl.edu	37	chr1	145537186	145537186	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttccaggtccccttctCaaaggattgtggccctgaca	8	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	145537186	145537186	C	G	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	nonsense	c.2357	p.S786*	0.991	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	51	0	0	56	16	22.22	-	-	-	G	145537186	C	G	145537186	4	3	240	1	0	0	0	0	0	1	0	0	7927	838	29	2	2431	2	ITGA10	1	145537186	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19113	145537186	103713435	220	19070										
CHD1L	0	genome.wustl.edu	37	chr1	146758048	146758048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagcgagccagaggaccttGagaatggggaagagagctct	16	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	146758048	146758048	G	C	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.2092	p.E698Q	0.998	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	48	0	0	53	13	19.7	-	-	-	C	146758048	G	C	146758048	3	2	240	1	0	0	0	0	1	0	0	0	3353	1291	45	2	2162	2	CHD1L	1	146758048	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1220862	146758048	102492573	221	19071										
BCL9	0	genome.wustl.edu	37	chr1	147084768	147084768	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagctggattccaaattctCcaatcagggtaaacaggggg	11	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	147084768	147084768	C	G	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.140	p.S47C	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	67	0	0	44	28	38.89	-	-	-	G	147084768	C	G	147084768	3	3	240	1	0	0	0	0	1	0	0	0	1385	855	30	2	146	2	BCL9	1	147084768	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	326720	147084768	102165853	222	19072										
GJA8	0	genome.wustl.edu	37	chr1	147380472	147380472	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggaccagggcagcgtcaaGaagagcagcggcagcaaagg	16	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	147380472	147380472	G	A	SNP	GJA8	ENST00000240986	human	ensembl	69_37n	1	known	silent	c.390	p.K130	1.000	NULL	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634	51	0	0	42	7	14.29	-	-	-	A	147380472	G	A	147380472	2	1	240	1	0	0	0	0	0	0	0	1	6457	933	33	2		2	GJA8	1	147380472	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	295704	147380472	101870149	223	19073										
HIST2H2BF	0	genome.wustl.edu	37	chr1	149783669	149783669	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcccgcgatgcgctcgaaGatgtcgttgacgaaggagtt	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	149783669	149783669	G	C	SNP	HIST2H2BF	ENST00000427880	human	ensembl	69_37n	-1	known	missense	c.210	p.I70M	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814	124	0	0	149	39	20.74	-	-	-	C	149783669	G	C	149783669	3	2	240	1	0	0	0	0	1	0	0	0	7231	932	33	2	591	2	HIST2H2BF	1	149783669	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2403197	149783669	99466952	224	19074										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858749	149858749	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgcggctcgggacaacaaGaagacgcgcatcatccctcg	11	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	149858749	149858749	G	C	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	missense	c.225	p.K75N	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	103	0	0	58	23	28.4	-	-	-	C	149858749	G	C	149858749	3	2	240	1	0	0	0	0	1	0	0	0	7229	933	33	2	227	2	HIST2H2AC	1	149858749	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	75080	149858749	99391872	225	19075										
OTUD7B	0	genome.wustl.edu	37	chr1	149939379	149939379	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacccccaccattggaggaGacatgggaccgggccaggga	14	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	149939379	149939379	G	C	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	silent	c.342	p.V114	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	40	0	0	35	18	33.96	-	-	-	C	149939379	G	C	149939379	2	2	240	1	0	0	0	0	0	0	0	1	11392	929	33	2		2	OTUD7B	1	149939379	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	80630	149939379	99311242	226	19076										
VPS45	0	genome.wustl.edu	37	chr1	150039996	150039996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatgaaagtacttctcatgGataaagagacggtgagtttg	12	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150039996	150039996	G	A	SNP	VPS45	ENST00000369130	human	ensembl	69_37n	1	known	missense	c.82	p.D28N	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	100	1	0.99	122	29	19.21	-	-	-	A	150039996	G	A	150039996	3	1	240	1	0	0	0	0	1	0	0	0	17308	1174	41	2	84	2	VPS45	1	150039996	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	100617	150039996	99210625	227	19077										
VPS45	0	genome.wustl.edu	37	chr1	150064414	150064414	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctcgtgtctgcagttgttGaatatggtggtaaacgagtc	13	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150064414	150064414	G	C	SNP	VPS45	ENST00000369130	human	ensembl	69_37n	1	known	missense	c.1282	p.E428Q	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	139	0	0	80	58	42.03	-	-	-	C	150064414	G	C	150064414	3	2	240	1	0	0	0	0	1	0	0	0	17308	1291	45	2	1328	2	VPS45	1	150064414	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24418	150064414	99186207	228	19078										
PRPF3	0	genome.wustl.edu	37	chr1	150316909	150316909	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtccttcctgtcacgacaGagcgcatgaagaggccaacg	11	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150316909	150316909	G	C	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	splice_site	c.1527-1	e11-1	1.000	-	-	-	no_errors	PRPF3	HGNC	ENSG00000117360	60	0	0	47	9	16.07	-	-	-	C	150316909	G	C	150316909	5	2	240	1	0	0	0	0	0	0	1	0	12646	956	33	2	1568	2	PRPF3	1	150316909	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	252495	150316909	98933712	229	19079										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150528805	150528805	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagcgggagccttgcggctCcagattgcccagctccggcc	13	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150528805	150528805	C	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	silent	c.1608	p.L536	0.785	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	36	0	0	21	18	46.15	-	-	-	T	150528805	C	T	150528805	2	4	240	1	0	0	0	0	0	0	0	1	277	842	30	2		2	ADAMTSL4	1	150528805	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	211896	150528805	98721816	230	19080										
SETDB1	0	genome.wustl.edu	37	chr1	150935477	150935477	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacactgtccagcagcacaGaaagtgagggggaaagtggg	16	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150935477	150935477	G	C	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.3319	p.E1107Q	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	81	0	0	87	28	24.35	-	-	-	C	150935477	G	C	150935477	3	2	240	1	0	0	0	0	1	0	0	0	14226	943	33	2	3389	2	SETDB1	1	150935477	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	406672	150935477	98315144	231	19081										
FAM63A	0	genome.wustl.edu	37	chr1	150972941	150972941	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccaccctcacctgtggatCaacaagccagccatggtaca	7	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	150972941	150972941	C	T	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.871	p.D291N	1.000	pfam_DUF544	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	39	0	0	42	22	34.38	-	-	-	T	150972941	C	T	150972941	3	4	240	1	0	0	0	0	1	0	0	0	5641	826	29	2	706	2	FAM63A	1	150972941	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37464	150972941	98277680	232	19082										
SEMA6C	0	genome.wustl.edu	37	chr1	151107641	151107641	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctcaggcccctctcacctCtgacaggccccatgccgggc	10	20	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	151107641	151107641	C	G	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.1578	p.Q526H	0.697	pfam_Plexin_repeat,superfamily_Plexin-like_fold	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	67	0	0	67	19	22.09	-	-	-	G	151107641	C	G	151107641	3	3	240	1	0	0	0	0	1	0	0	0	14129	912	32	2	1334	2	SEMA6C	1	151107641	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	134700	151107641	98142980	233	19083										
PIP5K1A	0	genome.wustl.edu	37	chr1	151171555	151171555	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttcctgtaccttgtcctCaggtaagcccggcagggcgt	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	151171555	151171555	C	T	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	missense	c.83	p.S28L	0.941	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	110	0	0	100	22	18.03	-	-	-	T	151171555	C	T	151171555	3	4	240	1	0	0	0	0	1	0	0	0	12013	838	29	2	85	2	PIP5K1A	1	151171555	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63914	151171555	98079066	234	19084										
PI4KB	0	genome.wustl.edu	37	chr1	151274390	151274390	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccacacttgacaatgactGacaggagccgccaattgggg	11	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	151274390	151274390	G	C	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	nonsense	c.1715	p.S572*	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	73	0	0	63	12	16	-	-	-	C	151274390	G	C	151274390	4	2	240	1	0	0	0	0	0	1	0	0	11948	1294	45	2	791	2	PI4KB	1	151274390	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	102835	151274390	97976231	235	19085										
CGN	0	genome.wustl.edu	37	chr1	151509326	151509326	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagcagcatgaggtcaatGaacagctccaggcccggatc	13	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	151509326	151509326	G	C	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.3427	p.E1143Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	119	0	0	108	24	18.18	-	-	-	C	151509326	G	C	151509326	3	2	240	1	0	0	0	0	1	0	0	0	3332	1291	45	2	3501	2	CGN	1	151509326	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	234936	151509326	97741295	236	19086										
CELF3	0	genome.wustl.edu	37	chr1	151678416	151678416	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactcctggggcaggtggtaGatgaagatgttgcagccatc	14	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	151678416	151678416	G	C	SNP	CELF3	ENST00000290583	human	ensembl	69_37n	-1	known	missense	c.1152	p.I384M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF3	HGNC	ENSG00000159409	62	0	0	69	21	23.33	-	-	-	C	151678416	G	C	151678416	3	2	240	1	0	0	0	0	1	0	0	0	3246	932	33	2	253	2	CELF3	1	151678416	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	169090	151678416	97572205	237	19087										
TCHHL1	0	genome.wustl.edu	37	chr1	152058780	152058780	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgagactgctgttccttCaagttcagggtgagtctgat	11	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152058780	152058780	C	T	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.1378	p.E460K	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	187	0	0	135	72	34.78	-	-	-	T	152058780	C	T	152058780	3	4	240	1	0	0	0	0	1	0	0	0	15796	835	29	2	1340	2	TCHHL1	1	152058780	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	380364	152058780	97191841	238	19088										
TCHH	0	genome.wustl.edu	37	chr1	152083905	152083905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcagtcgctgctcgagcctCtcttcctgctcgcgcttcag	9	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152083905	152083905	C	G	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.1788	p.E596D	0.086	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	74	0	0	69	14	16.87	-	-	-	G	152083905	C	G	152083905	3	3	240	1	0	0	0	0	1	0	0	0	15795	912	32	2	4047	2	TCHH	1	152083905	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25125	152083905	97166716	239	19089										
TCHH	0	genome.wustl.edu	37	chr1	152085347	152085347	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatctcctttggtcttcttCttgcctgcgatcttgtaaca	7	11	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152085347	152085347	C	G	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.346	p.E116Q	1.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	173	0	0	246	30	10.87	-	-	-	G	152085347	C	G	152085347	3	3	240	1	0	0	0	0	1	0	0	0	15795	922	32	2	5489	2	TCHH	1	152085347	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1442	152085347	97165274	240	19090										
RPTN	0	genome.wustl.edu	37	chr1	152129019	152129019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatccttgtcttgtctctCagactgattgtggtgagaat	10	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152129019	152129019	C	G	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.556	p.E186Q	0.714	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	218	0	0	252	47	15.72	-	-	-	G	152129019	C	G	152129019	3	3	240	1	0	0	0	0	1	0	0	0	13750	835	29	2	1802	2	RPTN	1	152129019	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43672	152129019	97121602	241	19091										
FLG	0	genome.wustl.edu	37	chr1	152277037	152277037	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggatccctgccttcctcttCtgcttgaccccgggtgtcca	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152277037	152277037	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.10325	p.R3442K	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	235	0	0	253	60	19.11	-	-	-	T	152277037	C	T	152277037	3	4	240	1	0	0	0	0	1	0	0	0	5968	913	32	2	1864	2	FLG	1	152277037	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148018	152277037	96973584	242	19092										
FLG	0	genome.wustl.edu	37	chr1	152283475	152283475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgactgctcccgagaagatCcatgatggtttctggaagca	11	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152283475	152283475	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3887	p.G1296E	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	255	0	0	182	116	38.93	-	-	-	T	152283475	C	T	152283475	3	4	240	1	0	0	0	0	1	0	0	0	5968	855	30	2	8302	2	FLG	1	152283475	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6438	152283475	96967146	243	19093										
FLG	0	genome.wustl.edu	37	chr1	152283641	152283641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagctgtcagcccaagaggCagcttcatggtgacgtgacc	13	11	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152283641	152283641	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3721	p.A1241T	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	295	0	0	223	136	37.67	-	-	-	T	152283641	C	T	152283641	3	4	240	1	0	0	0	0	1	0	0	0	5968	710	25	4	8468	4	FLG	1	152283641	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	166	152283641	96966980	244	19094										
FLG	0	genome.wustl.edu	37	chr1	152287134	152287134	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagccaacttgaataccatCagaagaaactcagtgaagtc	8	9	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152287134	152287134	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.228	p.L76	0.720	pfscan_EF_HAND_2	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	192	0	0	148	41	21.58	-	-	-	G	152287134	C	G	152287134	2	3	240	1	0	0	0	0	0	0	0	1	5968	813	29	2		2	FLG	1	152287134	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3493	152287134	96963487	245	19095										
FLG2	0	genome.wustl.edu	37	chr1	152323345	152323345	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataaccagaatggccatgtCtagtggtatctcctgtctgt	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152323345	152323345	C	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.6917	p.R2306T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	258	0	0	277	76	21.53	-	-	-	G	152323345	C	G	152323345	3	3	240	1	0	0	0	0	1	0	0	0	5969	913	32	2	262	2	FLG2	1	152323345	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36211	152323345	96927276	246	19096										
LCE3B	0	genome.wustl.edu	37	chr1	152586468	152586468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgagccaccacaggtgctGcaggtcccaccgatgccggc	12	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152586468	152586468	G	A	SNP	LCE3B	ENST00000335633	human	ensembl	69_37n	1	novel	missense	c.182	p.C61Y	0.110	NULL	NULL	-	no_errors	LCE3B	HGNC	ENSG00000187238	33	0	0	29	16	35.56	-	-	-	A	152586468	G	A	152586468	3	1	240	1	0	0	0	0	1	0	0	0	8724	1319	46	4	184	4	LCE3B	1	152586468	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	263123	152586468	96664153	247	19097										
LCE2C	0	genome.wustl.edu	37	chr1	152648635	152648635	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgcagtctcttcttgctgTggtcccagctctgggagctg	12	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152648635	152648635	T	A	SNP	LCE2C	ENST00000368783	human	ensembl	69_37n	1	known	nonsense	c.144	p.C48*	0.949	NULL	NULL	-	no_errors	LCE2C	HGNC	ENSG00000187180	139	0	0	174	54	23.68	-	-	-	A	152648635	T	A	152648635	4	1	240	1	0	0	0	0	0	1	0	0	8721	1702	59	5	146	5	LCE2C	1	152648635	Nonsense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	62167	152648635	96601986	248	19098										
LCE1B	0	genome.wustl.edu	37	chr1	152784994	152784994	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaagtgccctcccaagtgCctcacccctagatgcccccc	6	22	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	152784994	152784994	C	T	SNP	LCE1B	ENST00000360090	human	ensembl	69_37n	1	known	silent	c.72	p.C24	0.761	NULL	NULL	-	no_errors	LCE1B	HGNC	ENSG00000196734	174	0	0	143	41	22.16	-	-	-	T	152784994	C	T	152784994	2	4	240	1	0	0	0	0	0	0	0	1	8714	747	26	4		4	LCE1B	1	152784994	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	136359	152784994	96465627	249	19099										
PGLYRP4	0	genome.wustl.edu	37	chr1	153318658	153318658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagcttgtgttttgttccagGaggaatcacctgcaaaggaa	11	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	153318658	153318658	G	T	SNP	PGLYRP4	ENST00000359650	human	ensembl	69_37n	-1	known	missense	c.59	p.S20Y	0.514	NULL	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP4	HGNC	ENSG00000163218	203	0	0	152	121	44.32	-	-	-	T	153318658	G	T	153318658	3	4	240	1	0	0	0	0	1	0	0	0	11870	1174	41	2	1090	2	PGLYRP4	1	153318658	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	533664	153318658	95931963	250	19100										
NPR1	0	genome.wustl.edu	37	chr1	153665734	153665734	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagagggagttacccttctCaagcagccaatgccactccc	8	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	153665734	153665734	C	G	SNP	NPR1	ENST00000368677	human	ensembl	69_37n	1	known	missense	c.727	p.Q243E	0.002	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	47	0	0	30	6	16.67	-	-	-	G	153665734	C	G	153665734	3	3	240	1	0	0	0	0	1	0	0	0	10667	841	29	2		2	NPR1	1	153665734	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	347076	153665734	95584887	251	19101										
RAB13	0	genome.wustl.edu	37	chr1	153955277	153955277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaggcgctccaccccagccGaggcattctgggggcaaaag	14	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	153955277	153955277	G	A	SNP	RAB13	ENST00000368575	human	ensembl	69_37n	-1	known	missense	c.332	p.S111L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545	67	0	0	70	14	16.47	-	-	-	A	153955277	G	A	153955277	3	1	240	1	0	0	0	0	1	0	0	0	12982	1059	37	1	295	1	RAB13	1	153955277	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	289543	153955277	95295344	252	19102										
TPM3	0	genome.wustl.edu	37	chr1	154164459	154164459	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcattctccttgtctaacttCagcatctgcatctttttctt	4	12	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154164459	154164459	C	T	SNP	TPM3	ENST00000368530	human	ensembl	69_37n	-1	known	silent	c.36	p.L12	1.000	NULL	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	153	1	0.65	179	39	17.89	-	-	-	T	154164459	C	T	154164459	2	4	240	1	0	0	0	0	0	0	0	1	16503	813	29	2		2	TPM3	1	154164459	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	209182	154164459	95086162	253	19103										
UBAP2L	0	genome.wustl.edu	37	chr1	154226531	154226531	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcggtaccccagctccatctCttcatcaccccaaaaggacc	6	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154226531	154226531	C	G	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	missense	c.1820	p.S607C	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	58	0	0	69	20	22.47	-	-	-	G	154226531	C	G	154226531	3	3	240	1	0	0	0	0	1	0	0	0	16935	913	32	2	1874	2	UBAP2L	1	154226531	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62072	154226531	95024090	254	19104										
UBAP2L	0	genome.wustl.edu	37	chr1	154227755	154227755	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatcctccttgggtggcttGagccacagtgaggagattcc	12	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154227755	154227755	G	C	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	missense	c.2037	p.L679F	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	130	0	0	128	26	16.88	-	-	-	C	154227755	G	C	154227755	3	2	240	1	0	0	0	0	1	0	0	0	16935	1281	45	2	2099	2	UBAP2L	1	154227755	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1224	154227755	95022866	255	19105										
AQP10	0	genome.wustl.edu	37	chr1	154295740	154295740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctacagaactatacaggtGggaacctgacagtgactggc	11	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154295740	154295740	G	A	SNP	AQP10	ENST00000324978	human	ensembl	69_37n	1	known	missense	c.394	p.G132R	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP10	HGNC	ENSG00000143595	73	0	0	101	20	16.39	-	-	-	A	154295740	G	A	154295740	3	1	240	1	0	0	0	0	1	0	0	0	824	1348	47	4	408	4	AQP10	1	154295740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67985	154295740	94954881	256	19106										
IL6R	0	genome.wustl.edu	37	chr1	154401671	154401671	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtcttctccctcctccaGaggtggcgagaggcgtgctg	14	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154401671	154401671	G	C	SNP	IL6R	ENST00000368485	human	ensembl	69_37n	1	known	splice_site	c.86-1	e2-1	0.980	-	-	-	no_errors	IL6R	HGNC	ENSG00000160712	47	0	0	52	12	18.75	-	-	-	C	154401671	G	C	154401671	5	2	240	1	0	0	0	0	0	0	1	0	7756	956	33	2	91	2	IL6R	1	154401671	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	105931	154401671	94848950	257	19107										
TDRD10	0	genome.wustl.edu	37	chr1	154516584	154516584	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgggctatgcacgtcactGaggtatggactggttgttgg	15	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154516584	154516584	G	A	SNP	TDRD10	ENST00000368480	human	ensembl	69_37n	1	known	missense	c.649	p.E217K	0.793	pfam_Tudor	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239	95	0	0	116	34	22.67	-	-	-	A	154516584	G	A	154516584	3	1	240	1	0	0	0	0	1	0	0	0	15826	1291	45	2	679	2	TDRD10	1	154516584	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	114913	154516584	94734037	258	19108										
ADAR	0	genome.wustl.edu	37	chr1	154561914	154561914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctccttttaggctgagaGaatctcctttcacacagcga	7	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154561914	154561914	G	C	SNP	ADAR	ENST00000292205	human	ensembl	69_37n	-1	known	missense	c.2822	p.S941C	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	96	0	0	107	23	17.69	-	-	-	C	154561914	G	C	154561914	3	2	240	1	0	0	0	0	1	0	0	0	281	942	33	2	1015	2	ADAR	1	154561914	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45330	154561914	94688707	259	19109										
SHC1	0	genome.wustl.edu	37	chr1	154942698	154942698	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggaggggtagggggcctGagtctggcatggctgcccct	20	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154942698	154942698	G	C	SNP	SHC1	ENST00000448116	human	ensembl	69_37n	-1	known	nonsense	c.305	p.S102*	1.000	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2,prints_PID_domain,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691	23	0	0	20	11	35.48	-	-	-	C	154942698	G	C	154942698	4	2	240	1	0	0	0	0	0	1	0	0	14359	1294	45	2	1497	2	SHC1	1	154942698	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	380784	154942698	94307923	260	19110										
ZBTB7B	0	genome.wustl.edu	37	chr1	154987160	154987160	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagccccgaggatgacctGattgggattccattcccgga	14	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	154987160	154987160	G	C	SNP	ZBTB7B	ENST00000417934	human	ensembl	69_37n	1	known	silent	c.126	p.L42	0.999	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685	41	0	0	25	21	45.65	-	-	-	C	154987160	G	C	154987160	2	2	240	1	0	0	0	0	0	0	0	1	17650	1277	45	2		2	ZBTB7B	1	154987160	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44462	154987160	94263461	261	19111										
DCST1	0	genome.wustl.edu	37	chr1	155018651	155018651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgaggagaaaaccgtcatCttcccttgcaagcccaccat	8	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155018651	155018651	C	T	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	silent	c.1323	p.I441	1.000	pfam_DC_STAMP-like	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	66	0	0	95	22	18.8	-	-	-	T	155018651	C	T	155018651	2	4	240	1	0	0	0	0	0	0	0	1	4333	903	32	2		2	DCST1	1	155018651	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31491	155018651	94231970	262	19112										
EFNA4	0	genome.wustl.edu	37	chr1	155041530	155041530	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagatcccctggaggaggaGggatccctgctgcctgcact	13	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155041530	155041530	G	C	SNP	EFNA4	ENST00000427683	human	ensembl	69_37n	1	known	missense	c.505	p.G169R	0.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364	79	0	0	85	21	19.63	-	-	-	C	155041530	G	C	155041530	3	2	240	1	0	0	0	0	1	0	0	0	4988	1000	35	4	680	4	EFNA4	1	155041530	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22879	155041530	94209091	263	19113										
EFNA3	0	genome.wustl.edu	37	chr1	155058903	155058903	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacagaagactttgagggaGagaaccctcaggtgcccaag	12	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155058903	155058903	G	C	SNP	EFNA3	ENST00000368408	human	ensembl	69_37n	1	known	missense	c.601	p.E201Q	0.998	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA3	HGNC	ENSG00000143590	35	0	0	46	13	22.03	-	-	-	C	155058903	G	C	155058903	3	2	240	1	0	0	0	0	1	0	0	0	4987	943	33	2	619	2	EFNA3	1	155058903	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17373	155058903	94191718	264	19114										
TRIM46	0	genome.wustl.edu	37	chr1	155152321	155152321	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagaaccccgacacgggctCtgtgtatgtgctgcgtgtcc	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155152321	155152321	C	T	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1499	p.S500F	0.992	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	29	0	0	21	8	27.59	-	-	-	T	155152321	C	T	155152321	3	4	240	1	0	0	0	0	1	0	0	0	16617	913	32	2	1529	2	TRIM46	1	155152321	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	93418	155152321	94098300	265	19115										
THBS3	0	genome.wustl.edu	37	chr1	155174872	155174872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcatcctcaaatacgccttCtgtccagtcctaatctccag	5	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155174872	155174872	C	G	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.522	p.Q174H	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	70	0	0	80	14	14.89	-	-	-	G	155174872	C	G	155174872	3	3	240	1	0	0	0	0	1	0	0	0	15950	912	32	2	2432	2	THBS3	1	155174872	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22551	155174872	94075749	266	19116										
THBS3	0	genome.wustl.edu	37	chr1	155176168	155176168	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccacagctaccatctgccGagactcgcccacagtcagca	8	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155176168	155176168	G	C	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.109	p.R37G	1.000	smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	43	0	0	32	26	44.83	-	-	-	C	155176168	G	C	155176168	3	2	240	1	0	0	0	0	1	0	0	0	15950	1057	37	3	2849	3	THBS3	1	155176168	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1296	155176168	94074453	267	19117										
PKLR	0	genome.wustl.edu	37	chr1	155265252	155265252	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaggatcccagtgcggatCtccggtcccttggtgtccag	13	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155265252	155265252	C	G	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.483	p.E161D	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	13	0	0	15	19	55.88	-	-	-	G	155265252	C	G	155265252	3	3	240	1	0	0	0	0	1	0	0	0	12050	912	32	2	1273	2	PKLR	1	155265252	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89084	155265252	93985369	268	19118										
FDPS	0	genome.wustl.edu	37	chr1	155289696	155289696	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtctgcaacgggccactCcagaacagtaccagatcctg	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155289696	155289696	C	G	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	missense	c.1036	p.P346A	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	66	0	0	91	20	18.02	-	-	-	G	155289696	C	G	155289696	3	3	240	1	0	0	0	0	1	0	0	0	5849	855	30	2	1070	2	FDPS	1	155289696	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24444	155289696	93960925	269	19119										
FDPS	0	genome.wustl.edu	37	chr1	155290322	155290322	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagccacattatggctctCattgaacagtacgcagcacc	7	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155290322	155290322	C	G	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	silent	c.1182	p.L394	0.994	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	45	0	0	77	14	15.38	-	-	-	G	155290322	C	G	155290322	2	3	240	1	0	0	0	0	0	0	0	1	5849	813	29	2		2	FDPS	1	155290322	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	626	155290322	93960299	270	19120										
ASH1L	0	genome.wustl.edu	37	chr1	155449081	155449081	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcactgggaatggtctcatCactatgagactcactgattg	9	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155449081	155449081	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.3580	p.D1194N	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	74	0	0	121	22	15.38	-	-	-	T	155449081	C	T	155449081	3	4	240	1	0	0	0	0	1	0	0	0	1045	826	29	2	5418	2	ASH1L	1	155449081	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	158759	155449081	93801540	271	19121										
MSTO1	0	genome.wustl.edu	37	chr1	155582000	155582000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatcctgtgtgacctgcacGatggcttctctggggtaggc	14	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155582000	155582000	G	A	SNP	MSTO1	ENST00000245564	human	ensembl	69_37n	1	known	missense	c.706	p.D236N	0.987	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	pfam_Misato_II_myosin-like,pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	-	no_errors	MSTO1	HGNC	ENSG00000125459	103	0	0	103	12	10.43	-	-	-	A	155582000	G	A	155582000	3	1	240	1	0	0	0	0	1	0	0	0	9966	1058	37	1	736	1	MSTO1	1	155582000	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	132919	155582000	93668621	272	19122										
GON4L	0	genome.wustl.edu	37	chr1	155747607	155747607	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggttggccagtggttcctCaaacctattcccaacaggga	10	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155747607	155747607	C	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.1897	p.E633Q	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	126	0	0	126	34	21.25	-	-	-	G	155747607	C	G	155747607	3	3	240	1	0	0	0	0	1	0	0	0	6621	835	29	2	5014	2	GON4L	1	155747607	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165607	155747607	93503014	273	19123										
SYT11	0	genome.wustl.edu	37	chr1	155850389	155850389	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagccagacacttgccgaaGatggatatcaccggtctctc	9	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155850389	155850389	G	A	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	silent	c.960	p.K320	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	76	0	0	84	17	16.83	-	-	-	A	155850389	G	A	155850389	2	1	240	1	0	0	0	0	0	0	0	1	15559	933	33	2		2	SYT11	1	155850389	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	102782	155850389	93400232	274	19124										
RIT1	0	genome.wustl.edu	37	chr1	155874117	155874117	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcacctgtcttagctgtttGaggtctgacttgtttcccac	8	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	155874117	155874117	G	C	SNP	RIT1	ENST00000368323	human	ensembl	69_37n	-1	known	silent	c.414	p.L138	0.006	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT1	HGNC	ENSG00000143622	72	0	0	60	21	25.93	-	-	-	C	155874117	G	C	155874117	2	2	240	1	0	0	0	0	0	0	0	1	13472	1277	45	2		2	RIT1	1	155874117	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23728	155874117	93376504	275	19125										
SMG5	0	genome.wustl.edu	37	chr1	156247778	156247778	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctccacagcagctcctCagcctttctcccatagtcca	4	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156247778	156247778	C	G	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	missense	c.235	p.E79Q	1.000	pfam_EST1	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	120	0	0	117	30	20.41	-	-	-	G	156247778	C	G	156247778	3	3	240	1	0	0	0	0	1	0	0	0	14885	835	29	2	2895	2	SMG5	1	156247778	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	373661	156247778	93002843	276	19126										
TMEM79	0	genome.wustl.edu	37	chr1	156255195	156255195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggatctcccacagccataGagggggctgaggatggtcta	14	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156255195	156255195	G	C	SNP	TMEM79	ENST00000295694	human	ensembl	69_37n	1	known	missense	c.178	p.E60Q	0.045	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472	23	0	0	20	5	20	-	-	-	C	156255195	G	C	156255195	3	2	240	1	0	0	0	0	1	0	0	0	16298	943	33	2	180	2	TMEM79	1	156255195	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7417	156255195	92995426	277	19127										
RHBG	0	genome.wustl.edu	37	chr1	156354347	156354348	+	Frame_Shift_Ins	INS	-	-	C													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagctaccctttctggactINSccccccccagactcccagca							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156354347	156354348	-	C	INS	RHBG	ENST00000400992	human	ensembl	69_37n	1	known	frame_shift_ins	c.1168_1169	p.R393fs	0.006:0.723	superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	61	0	0	69	16	18.82	-	-	-	C	156354348	-	C	156354347	7	5	240	1	0	1	1	0	0	0	0	0	13408	1551	54	0	1298	0	RHBG	1	156354347	Frame_Shift_Ins	INS	-	TCGA-AC-A23H-01A-11D-A159-09	99152	156354347	92896274	278	19128										
C1orf61	0	genome.wustl.edu	37	chr1	156390084	156390084	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcccctcgctcaagcctctCcctcccgcccgtgaggccgg	10	21	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156390084	156390084	C	T	SNP	C1orf61	ENST00000368242	human	ensembl	69_37n	-1	known	silent	c.45	p.G15	0.001	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf61	HGNC	ENSG00000125462	47	0	0	33	10	23.26	-	-	-	T	156390084	C	T	156390084	2	4	240	1	0	0	0	0	0	0	0	1	2072	870	30	2		2	C1orf61	1	156390084	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	35737	156390084	92860537	279	19129										
MEF2D	0	genome.wustl.edu	37	chr1	156437897	156437897	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccgtccgtcatcccggtctCccgtctcataggatcccccg	8	20	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156437897	156437897	C	G	SNP	MEF2D	ENST00000348159	human	ensembl	69_37n	-1	known	missense	c.1442	p.G481A	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604	20	0	0	23	5	17.86	-	-	-	G	156437897	C	G	156437897	3	3	240	1	0	0	0	0	1	0	0	0	9529	855	30	2	131	2	MEF2D	1	156437897	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	47813	156437897	92812724	280	19130										
BCAN	0	genome.wustl.edu	37	chr1	156617872	156617872	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggacccggatgacctctatGatgtgtactgttatgctgaa	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156617872	156617872	G	C	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.739	p.D247H	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,prints_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	49	0	0	49	35	41.67	-	-	-	C	156617872	G	C	156617872	3	2	240	1	0	0	0	0	1	0	0	0	1349	1290	45	2	753	2	BCAN	1	156617872	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	179975	156617872	92632749	281	19131										
SH2D2A	0	genome.wustl.edu	37	chr1	156784028	156784028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgaaggtcaccgcgctctCgctgaaccgcaccaagtagc	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156784028	156784028	C	T	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	missense	c.397	p.E133K	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	11	0	0	11	6	35.29	-	-	-	T	156784028	C	T	156784028	3	4	240	1	0	0	0	0	1	0	0	0	14320	893	31	1	822	1	SH2D2A	1	156784028	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	166156	156784028	92466593	282	19132										
NTRK1	0	genome.wustl.edu	37	chr1	156843686	156843686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaccccttcggccaggcctCcgcctccatcatggctgcct	8	20	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156843686	156843686	C	T	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.1112	p.S371F	0.014	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	38	0	0	40	16	28.57	-	-	-	T	156843686	C	T	156843686	3	4	240	1	0	0	0	0	1	0	0	0	10779	855	30	2	1272	2	NTRK1	1	156843686	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59658	156843686	92406935	283	19133										
ARHGEF11	0	genome.wustl.edu	37	chr1	156909698	156909698	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatcagatgtcgcaggttCtccactggaggggaaacagg	15	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	156909698	156909698	C	G	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.3738	p.E1246D	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	35	0	0	46	6	11.54	-	-	-	G	156909698	C	G	156909698	3	3	240	1	0	0	0	0	1	0	0	0	898	912	32	2	970	2	ARHGEF11	1	156909698	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66012	156909698	92340923	284	19134										
FCRL5	0	genome.wustl.edu	37	chr1	157494120	157494120	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggcctccagaccattgtCtgcctcacaggagtagattc	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157494120	157494120	C	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.2188	p.D730Y	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	62	0	0	61	16	20.78	-	-	-	A	157494120	C	A	157494120	3	1	240	1	0	0	0	0	1	0	0	0	5844	913	32	2	777	2	FCRL5	1	157494120	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	584422	157494120	91756501	285	19135										
FCRL4	0	genome.wustl.edu	37	chr1	157556084	157556084	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgctctcagggaacgctGagttttcctccccagactct	8	15	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157556084	157556084	G	A	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	nonsense	c.1009	p.Q337*	0.032	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	56	0	0	50	7	12.28	-	-	-	A	157556084	G	A	157556084	4	1	240	1	0	0	0	0	0	1	0	0	5843	1299	45	2	566	2	FCRL4	1	157556084	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	61964	157556084	91694537	286	19136										
FCRL4	0	genome.wustl.edu	37	chr1	157557155	157557155	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aataggatcctgagttttctCtccagacggttgggagctgg	13	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157557155	157557155	C	T	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	missense	c.758	p.R253K	0.582	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	57	0	0	71	17	19.32	-	-	-	T	157557155	C	T	157557155	3	4	240	1	0	0	0	0	1	0	0	0	5843	913	32	2	821	2	FCRL4	1	157557155	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1071	157557155	91693466	287	19137										
FCRL3	0	genome.wustl.edu	37	chr1	157666098	157666098	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgggccggatctctagattCacattagacacagggactcc	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157666098	157666098	C	T	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	silent	c.864	p.V288	0.086	pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	44	0	0	28	13	31.71	-	-	-	T	157666098	C	T	157666098	2	4	240	1	0	0	0	0	0	0	0	1	5842	813	29	2		2	FCRL3	1	157666098	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	108943	157666098	91584523	288	19138										
FCRL2	0	genome.wustl.edu	37	chr1	157737211	157737211	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagattgggggagagcctctCagggcctcacagtgaagctc	14	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157737211	157737211	C	G	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	silent	c.972	p.L324	0.009	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	38	0	0	41	7	14.58	-	-	-	G	157737211	C	G	157737211	2	3	240	1	0	0	0	0	0	0	0	1	5841	813	29	2		2	FCRL2	1	157737211	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71113	157737211	91513410	289	19139										
CD5L	0	genome.wustl.edu	37	chr1	157804221	157804221	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acattcgacccacgtgtcttCatcatggttgcaggtgttct	9	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	157804221	157804221	C	T	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	missense	c.694	p.E232K	0.231	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	28	0	0	54	11	16.92	-	-	-	T	157804221	C	T	157804221	3	4	240	1	0	0	0	0	1	0	0	0	3056	835	29	2	361	2	CD5L	1	157804221	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	67010	157804221	91446400	290	19140										
CD1A	0	genome.wustl.edu	37	chr1	158225878	158225878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgcagttagcttatcaagGatcagactttgtgagcttcc	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158225878	158225878	G	A	SNP	CD1A	ENST00000289429	human	ensembl	69_37n	1	known	missense	c.410	p.G137E	0.324	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1A	HGNC	ENSG00000158477	60	0	0	63	14	18.18	-	-	-	A	158225878	G	A	158225878	3	1	240	1	0	0	0	0	1	0	0	0	3003	1174	41	2	420	2	CD1A	1	158225878	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	421657	158225878	91024743	291	19141										
OR10K1	0	genome.wustl.edu	37	chr1	158435937	158435937	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagcactccggcttcagtCagctggtcatattcatgctt	8	13	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158435937	158435937	C	T	SNP	OR10K1	ENST00000289451	human	ensembl	69_37n	1	known	nonsense	c.586	p.Q196*	0.114	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285	118	1	0.84	123	29	19.08	-	-	-	T	158435937	C	T	158435937	4	4	240	1	0	0	0	0	0	1	0	0	10986	827	29	2	588	2	OR10K1	1	158435937	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	210059	158435937	90814684	292	19142										
SPTA1	0	genome.wustl.edu	37	chr1	158595954	158595954	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgttttgccagaagagtGaggaagtcaccaaggtctgc	12	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158595954	158595954	G	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.5892	p.L1964	0.674	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	128	0	0	120	22	15.49	-	-	-	C	158595954	G	C	158595954	2	2	240	1	0	0	0	0	0	0	0	1	15207	1277	45	2		2	SPTA1	1	158595954	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	160017	158595954	90654667	293	19143										
SPTA1	0	genome.wustl.edu	37	chr1	158607965	158607965	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttttttcttcacaatctGatcaacgttgaaagtcccgc	5	11	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158607965	158607965	G	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.5047	p.Q1683E	0.952	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	73	0	0	93	15	13.89	-	-	-	C	158607965	G	C	158607965	3	2	240	1	0	0	0	0	1	0	0	0	15207	1299	45	2	2280	2	SPTA1	1	158607965	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12011	158607965	90642656	294	19144										
SPTA1	0	genome.wustl.edu	37	chr1	158632585	158632585	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctgcagatggagaaggtCtaagagcttcttctttcggg	13	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158632585	158632585	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.2371	p.D791H	0.998	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	96	0	0	114	25	17.99	-	-	-	G	158632585	C	G	158632585	3	3	240	1	0	0	0	0	1	0	0	0	15207	913	32	2	5032	2	SPTA1	1	158632585	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24620	158632585	90618036	295	19145										
MNDA	0	genome.wustl.edu	37	chr1	158812191	158812191	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaccttgttaacaatcttcGaaaagagaagtcaaaaggta	7	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158812191	158812191	G	C	SNP	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	missense	c.248	p.R83P	0.000	pfam_DAPIN,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	51	0	0	55	9	14.06	-	-	-	C	158812191	G	C	158812191	3	2	240	1	0	0	0	0	1	0	0	0	9748	1058	37	3	250	3	MNDA	1	158812191	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	179606	158812191	90438430	296	19146										
PYHIN1	0	genome.wustl.edu	37	chr1	158908888	158908888	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaaagaaaaaaaccatctGaagaagagactggaaccaaa	8	6	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	158908888	158908888	G	A	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.430	p.E144K	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	61	0	0	65	21	24.42	-	-	-	A	158908888	G	A	158908888	3	1	240	1	0	0	0	0	1	0	0	0	12948	1291	45	2	440	2	PYHIN1	1	158908888	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	96697	158908888	90341733	297	19147										
CRP	0	genome.wustl.edu	37	chr1	159683805	159683805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactgtacccacgggtcgagGacagttccgtgtagaagtgg	14	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	159683805	159683805	G	C	SNP	CRP	ENST00000255030	human	ensembl	69_37n	-1	known	missense	c.185	p.S62C	0.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693	70	0	0	76	26	25.24	-	-	-	C	159683805	G	C	159683805	3	2	240	1	0	0	0	0	1	0	0	0	3925	1174	41	2	493	2	CRP	1	159683805	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	774917	159683805	89566816	298	19148										
IGSF9	0	genome.wustl.edu	37	chr1	159900090	159900090	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagacgtagccatccagtctCttagggaccagctctggggg	13	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	159900090	159900090	C	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	missense	c.1953	p.K651N	0.009	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	40	0	0	45	7	13.46	-	-	-	A	159900090	C	A	159900090	3	1	240	1	0	0	0	0	1	0	0	0	7659	912	32	2	1614	2	IGSF9	1	159900090	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	216285	159900090	89350531	299	19149										
ATP1A4	0	genome.wustl.edu	37	chr1	160134050	160134050	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagacacctatcgctgctGagatcgaacacttcatccat	7	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160134050	160134050	G	A	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.883	p.E295K	0.999	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	173	0	0	210	45	17.65	-	-	-	A	160134050	G	A	160134050	3	1	240	1	0	0	0	0	1	0	0	0	1135	1291	45	2	909	2	ATP1A4	1	160134050	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	233960	160134050	89116571	300	19150										
DCAF8	0	genome.wustl.edu	37	chr1	160213762	160213762	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccttaccattagctaagtCtgttctgccatctgtgctgc	7	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160213762	160213762	C	G	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	missense	c.499	p.D167H	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	180	0	0	175	47	21.17	-	-	-	G	160213762	C	G	160213762	3	3	240	1	0	0	0	0	1	0	0	0	4308	913	32	2	1804	2	DCAF8	1	160213762	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	79712	160213762	89036859	301	19151										
NCSTN	0	genome.wustl.edu	37	chr1	160325512	160325512	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcccgaatggctgagccctGaagaggacctgaactttgta	11	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160325512	160325512	G	C	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	missense	c.1420	p.E474Q	1.000	pfam_Nicastrin	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	59	0	0	78	26	25	-	-	-	C	160325512	G	C	160325512	3	2	240	1	0	0	0	0	1	0	0	0	10313	1291	45	2	1466	2	NCSTN	1	160325512	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	111750	160325512	88925109	302	19152										
NCSTN	0	genome.wustl.edu	37	chr1	160328001	160328001	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcgtcacctactgcatCaatgccaaagctgatgtcct	6	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160328001	160328001	C	G	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	missense	c.2070	p.I690M	1.000	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	90	0	0	75	47	38.52	-	-	-	G	160328001	C	G	160328001	3	3	240	1	0	0	0	0	1	0	0	0	10313	816	29	2	2136	2	NCSTN	1	160328001	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2489	160328001	88922620	303	19153										
SLAMF1	0	genome.wustl.edu	37	chr1	160607157	160607157	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcttcggatggatcaagaGacactattttgttctcgaca	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160607157	160607157	G	A	SNP	SLAMF1	ENST00000302035	human	ensembl	69_37n	-1	known	missense	c.239	p.S80F	0.823	pfam_Sig_lymph_act_molc_N	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like	-	no_errors	SLAMF1	HGNC	ENSG00000117090	132	0	0	99	15	13.16	-	-	-	A	160607157	G	A	160607157	3	1	240	1	0	0	0	0	1	0	0	0	14456	942	33	2	792	2	SLAMF1	1	160607157	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	279156	160607157	88643464	304	19154										
CD244	0	genome.wustl.edu	37	chr1	160811287	160811287	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactttatctggaagcagaGattctgatcagaaaggcatt	9	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160811287	160811287	G	C	SNP	CD244	ENST00000368033	human	ensembl	69_37n	-1	known	missense	c.383	p.S128C	1.000	NULL	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like	-	no_errors	CD244	HGNC	ENSG00000122223	36	0	0	22	22	50	-	-	-	C	160811287	G	C	160811287	3	2	240	1	0	0	0	0	1	0	0	0	3016	942	33	2	757	2	CD244	1	160811287	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204130	160811287	88439334	305	19155										
ITLN1	0	genome.wustl.edu	37	chr1	160849181	160849181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttattaaataccctgaactGaacaaatcccgcagtgaatt	6	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	160849181	160849181	G	C	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	missense	c.709	p.Q237E	0.999	superfamily_Fibrinogen_a/b/g_C	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	62	0	0	49	19	27.94	-	-	-	C	160849181	G	C	160849181	3	2	240	1	0	0	0	0	1	0	0	0	7964	1299	45	2	240	2	ITLN1	1	160849181	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37894	160849181	88401440	306	19156										
KLHDC9	0	genome.wustl.edu	37	chr1	161069459	161069459	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtgggcaggggtcccaGaaggggccccatggactacg	17	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	161069459	161069459	G	A	SNP	KLHDC9	ENST00000392192	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	0.032	NULL	NULL	-	no_errors	KLHDC9	HGNC	ENSG00000162755	94	0	0	94	32	25.4	-	-	-	A	161069459	G	A	161069459	3	1	240	1	0	0	0	0	1	0	0	0	8417	943	33	2	788	2	KLHDC9	1	161069459	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	220278	161069459	88181162	307	19157										
ADAMTS4	0	genome.wustl.edu	37	chr1	161166022	161166022	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccacaatggcacagctCcgagccgggtcacagacggt	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	161166022	161166022	C	T	SNP	ADAMTS4	ENST00000367996	human	ensembl	69_37n	-1	known	silent	c.1029	p.R343	0.978	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859	45	0	0	59	9	13.24	-	-	-	T	161166022	C	T	161166022	2	4	240	1	0	0	0	0	0	0	0	1	268	842	30	2		2	ADAMTS4	1	161166022	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96563	161166022	88084599	308	19158										
FCGR2A	0	genome.wustl.edu	37	chr1	161476187	161476187	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacgtgctccaggaggactCtgtgactctgacatgccagg	12	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	161476187	161476187	C	G	SNP	FCGR2A	ENST00000271450	human	ensembl	69_37n	1	known	missense	c.170	p.S57C	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR2A	HGNC	ENSG00000143226	97	0	0	173	38	18.01	-	-	-	G	161476187	C	G	161476187	3	3	240	1	0	0	0	0	1	0	0	0	5827	913	32	2	180	2	FCGR2A	1	161476187	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	310165	161476187	87774434	309	19159										
ATF6	0	genome.wustl.edu	37	chr1	161789439	161789439	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagattgctgtgctaaggaGacagcaacgtatgataaaaa	10	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	161789439	161789439	G	A	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	missense	c.926	p.R309K	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	46	0	0	49	8	14.04	-	-	-	A	161789439	G	A	161789439	3	1	240	1	0	0	0	0	1	0	0	0	1088	942	33	2	956	2	ATF6	1	161789439	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	313252	161789439	87461182	310	19160										
NOS1AP	0	genome.wustl.edu	37	chr1	162302840	162302840	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcatgattcccaagacttGaagatcttcagctatatcgc	6	11	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	162302840	162302840	G	A	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	silent	c.378	p.L126	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	114	0	0	106	42	28.38	-	-	-	A	162302840	G	A	162302840	2	1	240	1	0	0	0	0	0	0	0	1	10614	1281	45	2		2	NOS1AP	1	162302840	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	513401	162302840	86947781	311	19161										
UAP1	0	genome.wustl.edu	37	chr1	162535985	162535985	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctccaggccatgaactttGaggagctgaacttctttttc	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	162535985	162535985	G	A	SNP	UAP1	ENST00000271469	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	NULL	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143	84	0	0	114	20	14.93	-	-	-	A	162535985	G	A	162535985	3	1	240	1	0	0	0	0	1	0	0	0	16922	1291	45	2	129	2	UAP1	1	162535985	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	233145	162535985	86714636	312	19162										
RGS5	0	genome.wustl.edu	37	chr1	163131767	163131767	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcctcgtccagcgaggttCtacatcaataataaggagag	12	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	163131767	163131767	C	G	SNP	RGS5	ENST00000313961	human	ensembl	69_37n	-1	known	splice_site	c.156-1	e3-1	1.000	-	-	-	no_errors	RGS5	HGNC	ENSG00000143248	54	0	0	62	8	11.43	-	-	-	G	163131767	C	G	163131767	5	3	240	1	0	0	0	0	0	0	1	0	13392	927	32	2	402	2	RGS5	1	163131767	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	595782	163131767	86118854	313	19163										
NUF2	0	genome.wustl.edu	37	chr1	163309205	163309205	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagagcaagaagagttcaagCagctttcagatggaattcag	11	6	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	163309205	163309205	C	T	SNP	NUF2	ENST00000271452	human	ensembl	69_37n	1	known	nonsense	c.544	p.Q182*	0.988	NULL	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228	124	0	0	127	50	28.25	-	-	-	T	163309205	C	T	163309205	4	4	240	1	0	0	0	0	0	1	0	0	10820	711	25	4	570	4	NUF2	1	163309205	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	177438	163309205	85941416	314	19164										
RXRG	0	genome.wustl.edu	37	chr1	165386387	165386387	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatcccgacacgtgtagatGaggtccttccttatcgtcct	8	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	165386387	165386387	G	A	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.513	p.L171	0.921	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	89	0	0	116	49	29.7	-	-	-	A	165386387	G	A	165386387	2	1	240	1	0	0	0	0	0	0	0	1	13851	1277	45	2		2	RXRG	1	165386387	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2077182	165386387	83864234	315	19165										
TMCO1	0	genome.wustl.edu	37	chr1	165728769	165728769	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatctcatcttacctattttCtttttctgttgtcgaccagc	4	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	165728769	165728769	C	G	SNP	TMCO1	ENST00000367881	human	ensembl	69_37n	-1	known	missense	c.354	p.K118N	1.000	pfam_DUF106_TM	pfam_DUF106_TM	-	no_errors	TMCO1	HGNC	ENSG00000143183	227	0	0	243	39	13.83	-	-	-	G	165728769	C	G	165728769	3	3	240	1	0	0	0	0	1	0	0	0	16090	912	32	2	385	2	TMCO1	1	165728769	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	342382	165728769	83521852	316	19166										
ADCY10	0	genome.wustl.edu	37	chr1	167815400	167815400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attccaacaggggagaatctCaaacaacaactcagtggtga	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	167815400	167815400	C	G	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.2539	p.E847Q	1.000	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	55	0	0	75	14	15.73	-	-	-	G	167815400	C	G	167815400	3	3	240	1	0	0	0	0	1	0	0	0	293	835	29	2	2349	2	ADCY10	1	167815400	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2086631	167815400	81435221	317	19167										
TBX19	0	genome.wustl.edu	37	chr1	168262409	168262409	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaattctctgcataaatatGaaccccaggttcacatagtg	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	168262409	168262409	G	T	SNP	TBX19	ENST00000367821	human	ensembl	69_37n	1	known	nonsense	c.496	p.E166*	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178	109	0	0	145	26	15.2	-	-	-	T	168262409	G	T	168262409	4	4	240	1	0	0	0	0	0	1	0	0	15749	1291	45	2	506	2	TBX19	1	168262409	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	447009	168262409	80988212	318	19168										
SELP	0	genome.wustl.edu	37	chr1	169582887	169582887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtagttcccgatggtctCgaggcactctccttgtttgc	12	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	169582887	169582887	C	G	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.526	p.E176Q	0.996	pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	66	0	0	95	19	16.67	-	-	-	G	169582887	C	G	169582887	3	3	240	1	0	0	0	0	1	0	0	0	14107	893	31	3	2018	3	SELP	1	169582887	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1320478	169582887	79667734	319	19169										
SELP	0	genome.wustl.edu	37	chr1	169588399	169588399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgaagcaaaggagttggGaaattccaaagaccactctc	9	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	169588399	169588399	G	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.62	p.S21F	0.000	NULL	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	108	0	0	117	19	13.97	-	-	-	A	169588399	G	A	169588399	3	1	240	1	0	0	0	0	1	0	0	0	14107	1174	41	2	2490	2	SELP	1	169588399	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5512	169588399	79662222	320	19170										
FMO3	0	genome.wustl.edu	37	chr1	171076846	171076846	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagtgtaaataaacatcctGattttgcaactactggccag	7	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	171076846	171076846	G	T	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	missense	c.352	p.D118Y	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	134	0	0	142	37	20.67	-	-	-	T	171076846	G	T	171076846	3	4	240	1	0	0	0	0	1	0	0	0	6002	1290	45	2	362	2	FMO3	1	171076846	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1488447	171076846	78173775	321	19171										
FMO3	0	genome.wustl.edu	37	chr1	171083156	171083156	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccatacagagtcctgagGaaagagcctgtatttaacga	9	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	171083156	171083156	G	A	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	silent	c.837	p.R279	0.809	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	69	0	0	75	13	14.77	-	-	-	A	171083156	G	A	171083156	2	1	240	1	0	0	0	0	0	0	0	1	6002	1165	41	2		2	FMO3	1	171083156	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6310	171083156	78167465	322	19172										
FMO2	0	genome.wustl.edu	37	chr1	171165874	171165874	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagcaacggcaaggagcaGagtgctgtctttgacgcagt	14	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	171165874	171165874	G	C	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	missense	c.408	p.Q136H	0.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	103	0	0	139	22	13.66	-	-	-	C	171165874	G	C	171165874	3	2	240	1	0	0	0	0	1	0	0	0	6001	933	33	2	418	2	FMO2	1	171165874	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82718	171165874	78084747	323	19173										
FMO1	0	genome.wustl.edu	37	chr1	171254610	171254610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgtacaagagtctccatCtccctttgaaagttttctta	6	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	171254610	171254610	C	G	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.1526	p.S509C	0.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	92	0	0	106	22	17.19	-	-	-	G	171254610	C	G	171254610	3	3	240	1	0	0	0	0	1	0	0	0	6000	913	32	2	1556	2	FMO1	1	171254610	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	88736	171254610	77996011	324	19174										
VAMP4	0	genome.wustl.edu	37	chr1	171707524	171707524	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacctgtgacatcatcatCattgaggtggcgcttaaact	9	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	171707524	171707524	C	T	SNP	VAMP4	ENST00000236192	human	ensembl	69_37n	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_Synaptobrevin,prints_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	VAMP4	HGNC	ENSG00000117533	205	0	0	231	45	16.3	-	-	-	T	171707524	C	T	171707524	3	4	240	1	0	0	0	0	1	0	0	0	17212	826	29	2	422	2	VAMP4	1	171707524	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	452914	171707524	77543097	325	19175										
DNM3	0	genome.wustl.edu	37	chr1	172038040	172038040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgagaagggaagacaaagGaccaggtaaagagaggtctt	15	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	172038040	172038040	G	A	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.1417	p.D473N	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	65	0	0	62	16	20.51	-	-	-	A	172038040	G	A	172038040	3	1	240	1	0	0	0	0	1	0	0	0	4708	1174	41	2	1459	2	DNM3	1	172038040	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	330516	172038040	77212581	326	19176										
CENPL	0	genome.wustl.edu	37	chr1	173772346	173772346	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctacagggtacagaccaaaGaaattcagtagtagccacat	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	173772346	173772346	G	C	SNP	CENPL	ENST00000356198	human	ensembl	69_37n	-1	known	missense	c.856	p.L286V	0.986	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334	87	0	0	77	33	30	-	-	-	C	173772346	G	C	173772346	3	2	240	1	0	0	0	0	1	0	0	0	3265	942	33	2	324	2	CENPL	1	173772346	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1734306	173772346	75478275	327	19177										
RC3H1	0	genome.wustl.edu	37	chr1	173930982	173930982	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactgctgcaggtggaatctCaatgggtatagggctttctc	12	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	173930982	173930982	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.2083	p.E695K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	199	0	0	316	52	14.13	-	-	-	T	173930982	C	T	173930982	3	4	240	1	0	0	0	0	1	0	0	0	13249	835	29	2	1354	2	RC3H1	1	173930982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	158636	173930982	75319639	328	19178										
RABGAP1L	0	genome.wustl.edu	37	chr1	174245061	174245061	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttctggcacttaacgagGaaaccccaaaaggtgacttt	8	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	174245061	174245061	G	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	69_37n	1	known	missense	c.1144	p.E382Q	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	45	0	0	51	17	24.64	-	-	-	C	174245061	G	C	174245061	3	2	240	1	0	0	0	0	1	0	0	0	13048	1175	41	2	1174	2	RABGAP1L	1	174245061	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	314079	174245061	75005560	329	19179										
MRPS14	0	genome.wustl.edu	37	chr1	174987702	174987702	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacttggcctgaagctgatGaaggaaccatctgaaagaca	11	8	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	174987702	174987702	G	A	SNP	MRPS14	ENST00000476371	human	ensembl	69_37n	-1	known	missense	c.56	p.S19L	0.108	NULL	pfam_Ribosomal_S14	-	no_errors	MRPS14	HGNC	ENSG00000120333	74	0	0	106	26	19.7	-	-	-	A	174987702	G	A	174987702	3	1	240	1	0	0	0	0	1	0	0	0	9896	1294	45	2	338	2	MRPS14	1	174987702	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	742641	174987702	74262919	330	19180										
RFWD2	0	genome.wustl.edu	37	chr1	176132107	176132107	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaaccaatcttgaaatatCtgccacctgtggccattcta	5	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	176132107	176132107	C	G	SNP	RFWD2	ENST00000367669	human	ensembl	69_37n	-1	known	missense	c.660	p.Q220H	0.998	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RFWD2	HGNC	ENSG00000143207	98	0	0	81	30	27.03	-	-	-	G	176132107	C	G	176132107	3	3	240	1	0	0	0	0	1	0	0	0	13343	912	32	2	1599	2	RFWD2	1	176132107	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1144405	176132107	73118514	331	19181										
PAPPA2	0	genome.wustl.edu	37	chr1	176759065	176759065	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgaatgtaccaatggcttCagcctggacagccagtgtgt	11	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	176759065	176759065	C	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4836	p.F1612L	0.908	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	87	0	0	110	55	33.33	-	-	-	A	176759065	C	A	176759065	3	1	240	1	0	0	0	0	1	0	0	0	11506	825	29	2	4955	2	PAPPA2	1	176759065	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	626958	176759065	72491556	332	19182										
PAPPA2	0	genome.wustl.edu	37	chr1	176759108	176759108	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaactgtaaccaggaacgtGaaaaggtaaggaacattttt	9	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	176759108	176759108	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4879	p.E1627K	0.539	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	82	0	0	121	19	13.57	-	-	-	A	176759108	G	A	176759108	3	1	240	1	0	0	0	0	1	0	0	0	11506	1291	45	2	4998	2	PAPPA2	1	176759108	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	43	176759108	72491513	333	19183										
ASTN1	0	genome.wustl.edu	37	chr1	176926963	176926963	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatgaagtcatcagctcctCtctgtggggagaaagagtgg	15	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	176926963	176926963	C	G	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1762	p.E588Q	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	32	0	0	54	16	22.86	-	-	-	G	176926963	C	G	176926963	3	3	240	1	0	0	0	0	1	0	0	0	1068	927	32	2	2202	2	ASTN1	1	176926963	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	167855	176926963	72323658	334	19184										
SEC16B	0	genome.wustl.edu	37	chr1	177930798	177930798	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatctctgatgtactgactGagctcatagctgctggagct	11	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	177930798	177930798	G	A	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	silent	c.714	p.L238	1.000	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	57	0	0	44	26	37.14	-	-	-	A	177930798	G	A	177930798	2	1	240	1	0	0	0	0	0	0	0	1	14075	1277	45	2		2	SEC16B	1	177930798	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1003835	177930798	71319823	335	19185										
SOAT1	0	genome.wustl.edu	37	chr1	179320505	179320505	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagccgatttggaatgttCtgatgtggacttctcttttc	9	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	179320505	179320505	C	A	SNP	SOAT1	ENST00000367619	human	ensembl	69_37n	1	known	missense	c.1504	p.L502M	0.146	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	152	0	0	161	86	34.82	-	-	-	A	179320505	C	A	179320505	3	1	240	1	0	0	0	0	1	0	0	0	14999	912	32	2	1558	2	SOAT1	1	179320505	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1389707	179320505	69930116	336	19186										
TDRD5	0	genome.wustl.edu	37	chr1	179587753	179587753	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggagaacacattcaaatCagttattgcacagattggac	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	179587753	179587753	C	T	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.851	p.S284L	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	75	0	0	86	14	14	-	-	-	T	179587753	C	T	179587753	3	4	240	1	0	0	0	0	1	0	0	0	15828	838	29	2	865	2	TDRD5	1	179587753	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267248	179587753	69662868	337	19187										
XPR1	0	genome.wustl.edu	37	chr1	180853188	180853188	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatagaagacacagatgatGaagctaacacttgaattttc	8	6	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	180853188	180853188	G	A	SNP	XPR1	ENST00000367590	human	ensembl	69_37n	1	known	missense	c.2077	p.E693K	1.000	NULL	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324	210	0	0	266	32	10.74	-	-	-	A	180853188	G	A	180853188	3	1	240	1	0	0	0	0	1	0	0	0	17548	1291	45	2	2135	2	XPR1	1	180853188	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1265435	180853188	68397433	338	19188										
KIAA1614	0	genome.wustl.edu	37	chr1	180913537	180913537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcaggtgtcaccctctCaccagcgtcggaaagctgcc	9	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	180913537	180913537	C	T	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.3172	p.H1058Y	1.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	75	0	0	87	16	15.53	-	-	-	T	180913537	C	T	180913537	3	4	240	1	0	0	0	0	1	0	0	0	8300	826	29	2	3202	2	KIAA1614	1	180913537	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60349	180913537	68337084	339	19189										
MR1	0	genome.wustl.edu	37	chr1	181019152	181019152	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgtgtgttccagggtctCacacttaccagagaatgatt	10	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	181019152	181019152	C	G	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	missense	c.334	p.H112D	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	72	0	0	134	22	14.1	-	-	-	G	181019152	C	G	181019152	3	3	240	1	0	0	0	0	1	0	0	0	9824	826	29	2	344	2	MR1	1	181019152	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	105615	181019152	68231469	340	19190										
IER5	0	genome.wustl.edu	37	chr1	181058944	181058944	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagcggtccggaagccgcCgagcccgggcagatctgctg	17	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	181058944	181058944	C	A	SNP	IER5	ENST00000367577	human	ensembl	69_37n	1	known	silent	c.906	p.A302	0.912	pfam_IER	pfam_IER	-	no_errors	IER5	HGNC	ENSG00000162783	27	0	0	20	6	23.08	-	-	-	A	181058944	C	A	181058944	2	1	240	1	0	0	0	0	0	0	0	1	7562	639	23	3		3	IER5	1	181058944	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39792	181058944	68191677	341	19191										
CACNA1E	0	genome.wustl.edu	37	chr1	181701704	181701704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcccaccccagcctttatCggcgacccagggccattgag	10	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	181701704	181701704	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.2482	p.R828W	0.990	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	58	0	0	67	31	31.63	-	-	-	T	181701704	C	T	181701704	3	4	240	1	0	0	0	0	1	0	0	0	2567	875	31	1	2560	1	CACNA1E	1	181701704	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	642760	181701704	67548917	342	19192										
CACNA1E	0	genome.wustl.edu	37	chr1	181741292	181741292	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaccgcaccatcagggcaGaacgagaacgaacgctgcgg	12	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	181741292	181741292	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.5064	p.Q1688H	0.998	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	73	0	0	90	33	26.83	-	-	-	T	181741292	G	T	181741292	3	4	240	1	0	0	0	0	1	0	0	0	2567	933	33	2	5210	2	CACNA1E	1	181741292	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39588	181741292	67509329	343	19193										
CACNA1E	0	genome.wustl.edu	37	chr1	181767956	181767956	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctaagtgacacggaagaaGatgacaaatgctagaggctg	13	6	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	181767956	181767956	G	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.6928	p.D2310H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	27	0	0	34	16	32	-	-	-	C	181767956	G	C	181767956	3	2	240	1	0	0	0	0	1	0	0	0	2567	942	33	2	6985	2	CACNA1E	1	181767956	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26664	181767956	67482665	344	19194										
RNASEL	0	genome.wustl.edu	37	chr1	182554545	182554545	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacagccttaaatatagatGacaggacatttcgggcaaat	9	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	182554545	182554545	G	A	SNP	RNASEL	ENST00000367559	human	ensembl	69_37n	-1	known	missense	c.1397	p.S466L	0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RNASEL	HGNC	ENSG00000135828	101	0	0	127	16	11.19	-	-	-	A	182554545	G	A	182554545	3	1	240	1	0	0	0	0	1	0	0	0	13502	1294	45	2	852	2	RNASEL	1	182554545	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	786589	182554545	66696076	345	19195										
DHX9	0	genome.wustl.edu	37	chr1	182853767	182853767	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggattaaactgcaaatatctCatgaagctgctgcctgtatc	8	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	182853767	182853767	C	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.3280	p.H1094Y	1.000	NULL	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	84	0	0	98	22	18.33	-	-	-	T	182853767	C	T	182853767	3	4	240	1	0	0	0	0	1	0	0	0	4552	826	29	2	3382	2	DHX9	1	182853767	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	299222	182853767	66396854	346	19196										
SMG7	0	genome.wustl.edu	37	chr1	183510225	183510225	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctataggcaaatggattgctGataatcagccaaggtaagtc	10	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	183510225	183510225	G	T	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.1402	p.D468Y	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	74	0	0	92	21	18.58	-	-	-	T	183510225	G	T	183510225	3	4	240	1	0	0	0	0	1	0	0	0	14887	1290	45	2	1452	2	SMG7	1	183510225	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	656458	183510225	65740396	347	19197										
SMG7	0	genome.wustl.edu	37	chr1	183515224	183515224	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaccccataaaactgtttGagccgtcattgcaacctcct	6	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	183515224	183515224	G	C	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.2356	p.E786Q	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	79	0	0	87	38	30.4	-	-	-	C	183515224	G	C	183515224	3	2	240	1	0	0	0	0	1	0	0	0	14887	1291	45	2	2560	2	SMG7	1	183515224	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4999	183515224	65735397	348	19198										
NCF2	0	genome.wustl.edu	37	chr1	183536371	183536371	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgaccgtggcccagttatCattgcccttcttcaagacaa	7	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	183536371	183536371	C	G	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	missense	c.823	p.D275H	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	113	0	0	121	76	38.58	-	-	-	G	183536371	C	G	183536371	3	3	240	1	0	0	0	0	1	0	0	0	10289	826	29	2	789	2	NCF2	1	183536371	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21147	183536371	65714250	349	19199										
ARPC5	0	genome.wustl.edu	37	chr1	183604716	183604716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgtcgcccccatcttcttCgtccacgaacttgttctcgt	7	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	183604716	183604716	C	T	SNP	ARPC5	ENST00000294742	human	ensembl	69_37n	-1	known	missense	c.79	p.E27K	1.000	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5	HGNC	ENSG00000162704	23	0	0	18	11	37.93	-	-	-	T	183604716	C	T	183604716	3	4	240	1	0	0	0	0	1	0	0	0	978	893	31	1	392	1	ARPC5	1	183604716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68345	183604716	65645905	350	19200										
FAM129A	0	genome.wustl.edu	37	chr1	184764170	184764170	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accttctccctccttcacgtCatctttgtgtgacagcagga	7	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	184764170	184764170	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	missense	c.2728	p.D910N	0.011	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	77	0	0	96	22	18.64	-	-	-	T	184764170	C	T	184764170	3	4	240	1	0	0	0	0	1	0	0	0	5476	826	29	2	62	2	FAM129A	1	184764170	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1159454	184764170	64486451	351	19201										
RNF2	0	genome.wustl.edu	37	chr1	185067212	185067212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccttgactagactgcagcGaggcaagaaacaacagattg	10	11	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	185067212	185067212	G	A	SNP	RNF2	ENST00000367510	human	ensembl	69_37n	1	known	missense	c.473	p.R158Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481	51	0	0	49	27	35.53	-	-	-	A	185067212	G	A	185067212	3	1	240	1	0	0	0	0	1	0	0	0	13558	1058	37	1	487	1	RNF2	1	185067212	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	303042	185067212	64183409	352	19202										
HMCN1	0	genome.wustl.edu	37	chr1	185931690	185931690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcccaagaatcagtctttCacaggagggtctgaggtctc	11	10	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	185931690	185931690	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.1869	p.F623L	0.984	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	175	0	0	125	73	36.87	-	-	-	A	185931690	C	A	185931690	3	1	240	1	0	0	0	0	1	0	0	0	7271	825	29	2	1915	2	HMCN1	1	185931690	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	864478	185931690	63318931	353	19203										
HMCN1	0	genome.wustl.edu	37	chr1	185985095	185985095	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgtttctccctagttcctCcaatgattgaaggcaacttg	7	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	185985095	185985095	C	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.4915	p.P1639A	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	54	0	0	95	17	15.18	-	-	-	G	185985095	C	G	185985095	3	3	240	1	0	0	0	0	1	0	0	0	7271	855	30	2	5041	2	HMCN1	1	185985095	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53405	185985095	63265526	354	19204										
TPR	0	genome.wustl.edu	37	chr1	186304493	186304493	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attagaaggttcttgaggctCatctctctgctcaaggtgtc	10	9	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	186304493	186304493	C	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.4888	p.E1630K	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	115	0	0	142	26	15.48	-	-	-	T	186304493	C	T	186304493	3	4	240	1	0	0	0	0	1	0	0	0	16512	835	29	2	2275	2	TPR	1	186304493	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	319398	186304493	62946128	355	19205										
PTGS2	0	genome.wustl.edu	37	chr1	186646840	186646840	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatctgtcttgaaaaactGatgcgtgaagtgctgggcaa	12	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	186646840	186646840	G	A	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	nonsense	c.580	p.Q194*	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	100	0	0	107	21	16.28	-	-	-	A	186646840	G	A	186646840	4	1	240	1	0	0	0	0	0	1	0	0	12837	1299	45	2	1258	2	PTGS2	1	186646840	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	342347	186646840	62603781	356	19206										
PLA2G4A	0	genome.wustl.edu	37	chr1	186946853	186946853	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaagaatcctgatatggaGaaagattgcccaaccatcat	7	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	186946853	186946853	G	C	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.1893	p.E631D	0.996	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	66	0	0	80	14	14.89	-	-	-	C	186946853	G	C	186946853	3	2	240	1	0	0	0	0	1	0	0	0	12075	933	33	2	1951	2	PLA2G4A	1	186946853	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	300013	186946853	62303768	357	19207										
FAM5C	0	genome.wustl.edu	37	chr1	190423875	190423875	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatggaagggtcccttatcaGagaggagccagtcgaagggg	17	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	190423875	190423875	G	A	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.146	p.S49F	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	115	0	0	109	36	24.83	-	-	-	A	190423875	G	A	190423875	3	1	240	1	0	0	0	0	1	0	0	0	5639	942	33	2	2182	2	FAM5C	1	190423875	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3477022	190423875	58826746	358	19208										
KCNT2	0	genome.wustl.edu	37	chr1	196197466	196197466	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctggtcgaattaagtatCtaataaaagaaaacaaaata	6	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	196197466	196197466	C	G	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	splice_site	c.3297-1	e28-1	0.998	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687	64	0	0	88	17	16.19	-	-	-	G	196197466	C	G	196197466	5	3	240	1	0	0	0	0	0	0	1	0	8146	927	32	2	115	2	KCNT2	1	196197466	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5773591	196197466	53053155	359	19209										
CFHR5	0	genome.wustl.edu	37	chr1	196971746	196971746	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctacttccagaagcaaaaGaaattgtatgtaaagatgga	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	196971746	196971746	G	C	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	missense	c.1354	p.E452Q	0.246	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	93	0	0	120	25	17.24	-	-	-	C	196971746	G	C	196971746	3	2	240	1	0	0	0	0	1	0	0	0	3317	943	33	2	1312	2	CFHR5	1	196971746	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	774280	196971746	52278875	360	19210										
ASPM	0	genome.wustl.edu	37	chr1	197063237	197063237	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatcattaagaagtgttcatGagctatctttgcaggaagta	9	5	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197063237	197063237	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.9061	p.H3021D	0.001	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	103	0	0	94	17	15.32	-	-	-	C	197063237	G	C	197063237	3	2	240	1	0	0	0	0	1	0	0	0	1060	1290	45	2	1408	2	ASPM	1	197063237	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	91491	197063237	52187384	361	19211										
ASPM	0	genome.wustl.edu	37	chr1	197069590	197069590	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatggtgctatttttaatttCctgaaacttccgtttctgta	6	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197069590	197069590	C	G	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.8791	p.E2931Q	0.998	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	54	0	0	57	13	18.57	-	-	-	G	197069590	C	G	197069590	3	3	240	1	0	0	0	0	1	0	0	0	1060	864	30	2	1686	2	ASPM	1	197069590	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6353	197069590	52181031	362	19212										
ASPM	0	genome.wustl.edu	37	chr1	197094316	197094316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtgtgagaagttccatgGttcgcctggcagtaataaaa	11	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197094316	197094316	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.2942	p.T981N	0.997	superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	115	0	0	99	20	16.81	-	-	-	T	197094316	G	T	197094316	3	4	240	1	0	0	0	0	1	0	0	0	1060	1261	44	4	7563	4	ASPM	1	197094316	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24726	197094316	52156305	363	19213										
ASPM	0	genome.wustl.edu	37	chr1	197098320	197098320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaatgaaaagcataccttGaattcggcatctttacagaa	6	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197098320	197098320	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.2757	p.F919L	1.000	superfamily_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	78	0	0	90	20	18.18	-	-	-	C	197098320	G	C	197098320	3	2	240	1	0	0	0	0	1	0	0	0	1060	1281	45	2	7756	2	ASPM	1	197098320	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4004	197098320	52152301	364	19214										
ZBTB41	0	genome.wustl.edu	37	chr1	197128626	197128626	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaactatatttgcaggttGaggagtaagagtatattttt	11	2	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197128626	197128626	G	A	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	nonsense	c.2593	p.Q865*	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	198	0	0	238	40	14.39	-	-	-	A	197128626	G	A	197128626	4	1	240	1	0	0	0	0	0	1	0	0	17639	1299	45	2	140	2	ZBTB41	1	197128626	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30306	197128626	52121995	365	19215										
LHX9	0	genome.wustl.edu	37	chr1	197898305	197898305	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctgaccaatcccactatCactgtagtgacatccgtgac	7	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	197898305	197898305	C	A	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	silent	c.1110	p.I370	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	47	0	0	33	7	17.5	-	-	-	A	197898305	C	A	197898305	2	1	240	1	0	0	0	0	0	0	0	1	8832	816	29	2		2	LHX9	1	197898305	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	769679	197898305	51352316	366	19216										
KIF14	0	genome.wustl.edu	37	chr1	200522551	200522551	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctactgggtgtgcattcctCtgagctcactgctggggatg	13	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	200522551	200522551	C	T	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.4912	p.E1638K	0.075	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	102	0	0	91	33	26.61	-	-	-	T	200522551	C	T	200522551	3	4	240	1	0	0	0	0	1	0	0	0	8328	922	32	2	38	2	KIF14	1	200522551	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2624246	200522551	48728070	367	19217										
C1orf106	0	genome.wustl.edu	37	chr1	200877971	200877971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctgaggctgggagcccaGaacgggctccagtccagaac	14	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	200877971	200877971	G	A	SNP	C1orf106	ENST00000367342	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	0.986	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362	16	0	0	20	12	37.5	-	-	-	A	200877971	G	A	200877971	3	1	240	1	0	0	0	0	1	0	0	0	1999	943	33	2	969	2	C1orf106	1	200877971	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	355420	200877971	48372650	368	19218										
CACNA1S	0	genome.wustl.edu	37	chr1	201046054	201046054	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggagagcctacctggaaGacgctgatgagggcttgggg	19	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	201046054	201046054	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.1821	p.V607	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	95	0	0	94	32	25.4	-	-	-	A	201046054	G	A	201046054	2	1	240	1	0	0	0	0	0	0	0	1	2572	929	33	2		2	CACNA1S	1	201046054	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	168083	201046054	48204567	369	19219										
CACNA1S	0	genome.wustl.edu	37	chr1	201046145	201046145	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccccccaaagagctgcatgCccaggagggcgaagatgacg	13	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	201046145	201046145	C	G	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.1730	p.G577A	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	122	0	0	166	36	17.82	-	-	-	G	201046145	C	G	201046145	3	3	240	1	0	0	0	0	1	0	0	0	2572	739	26	4	4023	4	CACNA1S	1	201046145	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	91	201046145	48204476	370	19220										
NAV1	0	genome.wustl.edu	37	chr1	201777848	201777848	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagttggaggtggacctgctGaaagcagagaatgaccgact	14	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	201777848	201777848	G	A	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	silent	c.4056	p.L1352	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	27	0	0	37	11	22.92	-	-	-	A	201777848	G	A	201777848	2	1	240	1	0	0	0	0	0	0	0	1	10255	1277	45	2		2	NAV1	1	201777848	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	731703	201777848	47472773	371	19221										
TIMM17A	0	genome.wustl.edu	37	chr1	201932806	201932806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagtatggttcaagtcagaGgaaaggaagatccctggaac	13	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	201932806	201932806	G	A	SNP	TIMM17A	ENST00000367287	human	ensembl	69_37n	1	known	missense	c.253	p.G85R	1.000	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	-	no_errors	TIMM17A	HGNC	ENSG00000134375	135	0	0	98	42	29.79	-	-	-	A	201932806	G	A	201932806	3	1	240	1	0	0	0	0	1	0	0	0	16003	1001	35	4	267	4	TIMM17A	1	201932806	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	154958	201932806	47317815	372	19222										
GPR37L1	0	genome.wustl.edu	37	chr1	202092631	202092631	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgggattttctggtcctCtttttctgcctccctattgt	7	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	202092631	202092631	C	G	SNP	GPR37L1	ENST00000367282	human	ensembl	69_37n	1	known	silent	c.540	p.L180	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37L1	HGNC	ENSG00000170075	41	0	0	69	15	17.65	-	-	-	G	202092631	C	G	202092631	2	3	240	1	0	0	0	0	0	0	0	1	6742	900	32	2		2	GPR37L1	1	202092631	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	159825	202092631	47157990	373	19223										
LGR6	0	genome.wustl.edu	37	chr1	202172978	202172978	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggttgacacttgtttgtCaagtgtcaataatcatctct	7	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	202172978	202172978	C	G	SNP	LGR6	ENST00000255432	human	ensembl	69_37n	1	known	missense	c.31	p.Q11E	0.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	78	0	0	64	36	36	-	-	-	G	202172978	C	G	202172978	3	3	240	1	0	0	0	0	1	0	0	0	8813	827	29	2	249	2	LGR6	1	202172978	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	80347	202172978	47077643	374	19224										
KDM5B	0	genome.wustl.edu	37	chr1	202702755	202702755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggcagaattttctctaatGgaggtttctctgacctccga	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	202702755	202702755	G	A	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.3683	p.P1228L	1.000	superfamily_Znf_FYVE_PHD	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	45	0	0	62	38	37.62	-	-	-	A	202702755	G	A	202702755	3	1	240	1	0	0	0	0	1	0	0	0	8187	1348	47	4	971	4	KDM5B	1	202702755	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	529777	202702755	46547866	375	19225										
ATP2B4	0	genome.wustl.edu	37	chr1	203668783	203668783	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttctccatcatccgaaacgGtcaactcatccagctccctg	6	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	203668783	203668783	G	C	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.587	p.G196A	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	85	0	0	96	39	28.89	-	-	-	C	203668783	G	C	203668783	3	2	240	1	0	0	0	0	1	0	0	0	1146	1261	44	4	597	4	ATP2B4	1	203668783	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	966028	203668783	45581838	376	19226										
ATP2B4	0	genome.wustl.edu	37	chr1	203669375	203669375	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatcctgatccaagggaatGatctgaagattgatgagagc	12	6	1	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	203669375	203669375	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.691	p.D231N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	81	0	0	107	17	13.71	-	-	-	A	203669375	G	A	203669375	3	1	240	1	0	0	0	0	1	0	0	0	1146	1290	45	2	705	2	ATP2B4	1	203669375	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	592	203669375	45581246	377	19227										
ATP2B4	0	genome.wustl.edu	37	chr1	203671192	203671192	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaaaaacaaggagtccctGaaaatcgcaacaaaggtaac	8	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	203671192	203671192	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.922	p.E308K	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	170	0	0	170	74	30.33	-	-	-	A	203671192	G	A	203671192	3	1	240	1	0	0	0	0	1	0	0	0	1146	1291	45	2	944	2	ATP2B4	1	203671192	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1817	203671192	45579429	378	19228										
ZC3H11A	0	genome.wustl.edu	37	chr1	203798919	203798919	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatatatagatcagttttctGaggaaggtgatgaaaccaaa	10	4	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	203798919	203798919	G	C	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.514	p.E172Q	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	53	0	0	39	19	32.76	-	-	-	C	203798919	G	C	203798919	3	2	240	1	0	0	0	0	1	0	0	0	17656	1291	45	2	532	2	ZC3H11A	1	203798919	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	127727	203798919	45451702	379	19229										
ZC3H11A	0	genome.wustl.edu	37	chr1	203818934	203818934	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcagaaacagcaggagagGgaaaaatcagtcttgacacc	11	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	203818934	203818934	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	silent	c.1719	p.R573	0.426	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	57	0	0	53	39	42.39	-	-	-	A	203818934	G	A	203818934	2	1	240	1	0	0	0	0	0	0	0	1	17656	1223	43	4		4	ZC3H11A	1	203818934	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	20015	203818934	45431687	380	19230										
PLEKHA6	0	genome.wustl.edu	37	chr1	204218354	204218354	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagccggtcctgctccctCaccaccttgttctgctcaca	6	19	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	204218354	204218354	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	silent	c.1632	p.V544	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	107	0	0	181	44	19.56	-	-	-	T	204218354	C	T	204218354	2	4	240	1	0	0	0	0	0	0	0	1	12134	813	29	2		2	PLEKHA6	1	204218354	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	399420	204218354	45032267	381	19231										
PLEKHA6	0	genome.wustl.edu	37	chr1	204228864	204228864	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttctccgagtctggcttctCatggctgcaggatgccaagg	13	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	204228864	204228864	C	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	nonsense	c.529	p.E177*	0.993	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	17	0	0	34	8	19.05	-	-	-	A	204228864	C	A	204228864	4	1	240	1	0	0	0	0	0	1	0	0	12134	835	29	2	2677	2	PLEKHA6	1	204228864	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10510	204228864	45021757	382	19232										
PPP1R15B	0	genome.wustl.edu	37	chr1	204378679	204378679	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgtcacgctgtaccgagtCtggacattcactttcttggc	9	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	204378679	204378679	C	T	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	missense	c.1861	p.D621N	0.162	pfam_Prot_Pase1_reg-su15A/B_C	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	61	0	0	65	33	33.67	-	-	-	T	204378679	C	T	204378679	3	4	240	1	0	0	0	0	1	0	0	0	12441	913	32	2	288	2	PPP1R15B	1	204378679	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	149815	204378679	44871942	383	19233										
PIK3C2B	0	genome.wustl.edu	37	chr1	204438647	204438647	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccttcctgtggggagagtGagttgtagttaagggtagga	17	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	204438647	204438647	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.284	p.S95L	0.991	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	136	0	0	124	32	20.51	-	-	-	A	204438647	G	A	204438647	3	1	240	1	0	0	0	0	1	0	0	0	11984	1294	45	2	4748	2	PIK3C2B	1	204438647	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59968	204438647	44811974	384	19234										
SRGAP2	0	genome.wustl.edu	37	chr1	206574870	206574870	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctggaacagtcgaagcatGagggtctggatgccatcgag	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	206574870	206574870	G	A	SNP	SRGAP2	ENST00000414007	human	ensembl	69_37n	1	known	missense	c.502	p.E168K	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon	SRGAP2	HGNC	ENSG00000163486	65	0	0	106	14	11.67	-	-	-	A	206574870	G	A	206574870	3	1	240	1	0	0	0	0	1	0	0	0	15237	1291	45	2	680	2	SRGAP2	1	206574870	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2136223	206574870	42675751	385	19235										
IKBKE	0	genome.wustl.edu	37	chr1	206648276	206648276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctgctgagtgtgctggaGagccctgagaatgcctttgg	15	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	206648276	206648276	G	C	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.297	p.E99D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	97	0	0	155	20	11.43	-	-	-	C	206648276	G	C	206648276	3	2	240	1	0	0	0	0	1	0	0	0	7666	933	33	2	307	2	IKBKE	1	206648276	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73406	206648276	42602345	386	19236										
DYRK3	0	genome.wustl.edu	37	chr1	206820844	206820844	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagaaaatccaatactattCagtcagatggcatcagtgac	7	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	206820844	206820844	C	T	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	nonsense	c.301	p.Q101*	0.935	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	90	0	0	52	43	45.26	-	-	-	T	206820844	C	T	206820844	4	4	240	1	0	0	0	0	0	1	0	0	4892	827	29	2	332	2	DYRK3	1	206820844	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	172568	206820844	42429777	387	19237										
IL24	0	genome.wustl.edu	37	chr1	207074898	207074898	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctacttgaaaactgttttCaaaaactaccacaatagaac	3	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	207074898	207074898	C	G	SNP	IL24	ENST00000294984	human	ensembl	69_37n	1	known	missense	c.363	p.F121L	0.999	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core,prints_Interleukin-24	-	no_errors	IL24	HGNC	ENSG00000162892	110	0	0	122	24	16.44	-	-	-	G	207074898	C	G	207074898	3	3	240	1	0	0	0	0	1	0	0	0	7731	825	29	2	380	2	IL24	1	207074898	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	254054	207074898	42175723	388	19238										
FAIM3	0	genome.wustl.edu	37	chr1	207087266	207087266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtaactcggcccttgtattCtgccttgatgaagttggtgg	12	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	207087266	207087266	C	G	SNP	FAIM3	ENST00000367091	human	ensembl	69_37n	-1	known	missense	c.211	p.E71Q	0.321	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	FAIM3	HGNC	ENSG00000162894	79	0	0	111	18	13.95	-	-	-	G	207087266	C	G	207087266	3	3	240	1	0	0	0	0	1	0	0	0	5417	922	32	2	989	2	FAIM3	1	207087266	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12368	207087266	42163355	389	19239										
C1orf116	0	genome.wustl.edu	37	chr1	207195828	207195828	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcctggagctggagacttCattggcaaaggtccctgagc	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	207195828	207195828	C	T	SNP	C1orf116	ENST00000359470	human	ensembl	69_37n	-1	known	missense	c.1281	p.M427I	0.001	NULL	NULL	-	no_errors	C1orf116	HGNC	ENSG00000182795	64	0	0	65	20	23.53	-	-	-	T	207195828	C	T	207195828	3	4	240	1	0	0	0	0	1	0	0	0	2008	826	29	2	528	2	C1orf116	1	207195828	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	108562	207195828	42054793	390	19240										
CR1	0	genome.wustl.edu	37	chr1	207684913	207684913	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccttattttttgcctctaGataccgactcattggttcct	5	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	207684913	207684913	G	C	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	splice_site	c.402-1	e4-1	0.145	-	-	-	no_errors	CR1	HGNC	ENSG00000203710	258	0	0	217	51	19.03	-	-	-	C	207684913	G	C	207684913	5	2	240	1	0	0	0	0	0	0	1	0	3870	956	33	2	415	2	CR1	1	207684913	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	489085	207684913	41565708	391	19241										
CR1	0	genome.wustl.edu	37	chr1	207741168	207741168	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcttttgtatgttttctaGaaatcttttgtccaagtcct	7	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	207741168	207741168	G	C	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	splice_site	c.3953-1	e25-1	0.842	-	-	-	no_errors	CR1	HGNC	ENSG00000203710	184	0	0	188	36	16.07	-	-	-	C	207741168	G	C	207741168	5	2	240	1	0	0	0	0	0	0	1	0	3870	956	33	2	4050	2	CR1	1	207741168	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	56255	207741168	41509453	392	19242										
CD34	0	genome.wustl.edu	37	chr1	208062090	208062090	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatagccagtgatgcccaaGacagccagcagggctcccga	11	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	208062090	208062090	G	C	SNP	CD34	ENST00000310833	human	ensembl	69_37n	-1	known	silent	c.909	p.V303	0.150	pfam_CD34/Podocalyxin	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	87	0	0	111	24	17.78	-	-	-	C	208062090	G	C	208062090	2	2	240	1	0	0	0	0	0	0	0	1	3035	929	33	2		2	CD34	1	208062090	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	320922	208062090	41188531	393	19243										
PLXNA2	0	genome.wustl.edu	37	chr1	208215578	208215578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgagcgaagccacgttgCcccggtcgcgcatggagaaa	14	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	208215578	208215578	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.4151	p.G1384D	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	97	0	0	180	30	14.29	-	-	-	T	208215578	C	T	208215578	3	4	240	1	0	0	0	0	1	0	0	0	12194	739	26	4	1577	4	PLXNA2	1	208215578	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	153488	208215578	41035043	394	19244										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209948732	209948732	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaaaaaagtactactggaGatggaagaccagaaaaacag	10	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	209948732	209948732	G	C	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	missense	c.813	p.E271D	1.000	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	86	0	0	81	38	31.93	-	-	-	C	209948732	G	C	209948732	3	2	240	1	0	0	0	0	1	0	0	0	16538	933	33	2	843	2	TRAF3IP3	1	209948732	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1733154	209948732	39301889	395	19245										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209949003	209949003	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagccagtatgaggctctGaaggaggactggaggaccct	16	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	209949003	209949003	G	C	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	silent	c.975	p.L325	0.992	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	27	0	0	37	18	32.73	-	-	-	C	209949003	G	C	209949003	2	2	240	1	0	0	0	0	0	0	0	1	16538	1277	45	2		2	TRAF3IP3	1	209949003	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	271	209949003	39301618	396	19246										
SYT14	0	genome.wustl.edu	37	chr1	210329132	210329132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacatcctcatgtcagtctCttgaacatggctcagttcca	7	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	210329132	210329132	C	G	SNP	SYT14	ENST00000422431	human	ensembl	69_37n	1	known	missense	c.1366	p.L456V	0.998	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT14	HGNC	ENSG00000143469	124	0	0	134	44	24.72	-	-	-	G	210329132	C	G	210329132	3	3	240	1	0	0	0	0	1	0	0	0	15562	913	32	2	1396	2	SYT14	1	210329132	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	380129	210329132	38921489	397	19247										
TRAF5	0	genome.wustl.edu	37	chr1	211545615	211545615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtgacagattacaagatGaagaagagagaggcggtgga	16	3	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	211545615	211545615	G	A	SNP	TRAF5	ENST00000261464	human	ensembl	69_37n	1	known	missense	c.1245	p.M415I	0.974	superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512	39	0	0	48	11	18.64	-	-	-	A	211545615	G	A	211545615	3	1	240	1	0	0	0	0	1	0	0	0	16540	1290	45	2	1283	2	TRAF5	1	211545615	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1216483	211545615	37705006	398	19248										
RD3	0	genome.wustl.edu	37	chr1	211652587	211652587	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttcctgcttcatcctctCcaggacctcctgcagcaccg	6	19	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	211652587	211652587	C	G	SNP	RD3	ENST00000367002	human	ensembl	69_37n	-1	known	missense	c.379	p.E127Q	1.000	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570	18	0	0	23	9	28.12	-	-	-	G	211652587	C	G	211652587	3	3	240	1	0	0	0	0	1	0	0	0	13270	864	30	2	212	2	RD3	1	211652587	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106972	211652587	37598034	399	19249										
NEK2	0	genome.wustl.edu	37	chr1	211847751	211847751	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccgatcatagtaacgaacGatgtttggatgtttcagttc	9	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	211847751	211847751	G	A	SNP	NEK2	ENST00000366999	human	ensembl	69_37n	-1	known	silent	c.201	p.I67	0.620	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK2	HGNC	ENSG00000117650	128	0	0	119	50	29.41	-	-	-	A	211847751	G	A	211847751	2	1	240	1	0	0	0	0	0	0	0	1	10396	1048	37	1		1	NEK2	1	211847751	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	195164	211847751	37402870	400	19250										
RPS6KC1	0	genome.wustl.edu	37	chr1	213434972	213434972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgctgtcctctttgaacttCtcactggcaaggtaagcagt	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	213434972	213434972	C	G	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	1	known	missense	c.2983	p.L995V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	192	0	0	244	49	16.72	-	-	-	G	213434972	C	G	213434972	3	3	240	1	0	0	0	0	1	0	0	0	13744	913	32	2	3033	2	RPS6KC1	1	213434972	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1587221	213434972	35815649	401	19251										
CENPF	0	genome.wustl.edu	37	chr1	214814716	214814716	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaagggagaaaagcatttCagagttatctgatcagtaca	10	5	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	214814716	214814716	C	T	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.3035	p.S1012L	1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	40	0	0	53	7	11.67	-	-	-	T	214814716	C	T	214814716	3	4	240	1	0	0	0	0	1	0	0	0	3260	838	29	2	3077	2	CENPF	1	214814716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1379744	214814716	34435905	402	19252										
KCNK2	0	genome.wustl.edu	37	chr1	215408381	215408381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgaaccacctgaccagcGagagggatgtcttgcctccc	11	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	215408381	215408381	G	A	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.1174	p.E392K	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	100	0	0	88	22	20	-	-	-	A	215408381	G	A	215408381	3	1	240	1	0	0	0	0	1	0	0	0	8120	1059	37	1	1243	1	KCNK2	1	215408381	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	593665	215408381	33842240	403	19253										
USH2A	0	genome.wustl.edu	37	chr1	216496860	216496860	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgcataatatctgtgtctGaggttaacagcagtctcagt	9	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	216496860	216496860	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.1506	p.L502	0.160	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	94	0	0	115	28	19.58	-	-	-	C	216496860	G	C	216496860	2	2	240	1	0	0	0	0	0	0	0	1	17133	1277	45	2		2	USH2A	1	216496860	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1088479	216496860	32753761	404	19254										
ESRRG	0	genome.wustl.edu	37	chr1	216850516	216850516	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacacactaaacacagtctcTtgggcatcgagttgagcatg	9	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	216850516	216850516	T	C	SNP	ESRRG	ENST00000408911	human	ensembl	69_37n	-1	known	missense	c.374	p.K125R	1.000	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	86	0	0	121	32	20.92	-	-	-	C	216850516	T	C	216850516	3	2	240	1	0	0	0	0	1	0	0	0	5299	1609	56	5	1026	5	ESRRG	1	216850516	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	353656	216850516	32400105	405	19255										
SLC30A10	0	genome.wustl.edu	37	chr1	220088925	220088925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttctactgaggccatcacTtccgtatgtgtctagagagg	10	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	220088925	220088925	T	G	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.1324	p.S442R	0.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	92	0	0	123	16	11.51	-	-	-	G	220088925	T	G	220088925	3	3	240	1	0	0	0	0	1	0	0	0	14643	1609	56	5	137	5	SLC30A10	1	220088925	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	3238409	220088925	29161696	406	19256										
EPRS	0	genome.wustl.edu	37	chr1	220156132	220156132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgtttcactagtaggacGaatggcaattggttctgcca	10	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	220156132	220156132	G	A	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.3355	p.R1119C	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Pro-tRNA-synth_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	113	1	0.88	93	26	21.85	-	-	-	A	220156132	G	A	220156132	3	1	240	1	0	0	0	0	1	0	0	0	5228	1058	37	1	1223	1	EPRS	1	220156132	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67207	220156132	29094489	407	19257										
EPRS	0	genome.wustl.edu	37	chr1	220160575	220160575	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggtctttcctttggccatCattttgtttctgaggcttat	9	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	220160575	220160575	C	T	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.2947	p.D983N	1.000	NULL	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	173	0	0	141	60	29.85	-	-	-	T	220160575	C	T	220160575	3	4	240	1	0	0	0	0	1	0	0	0	5228	826	29	2	1643	2	EPRS	1	220160575	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4443	220160575	29090046	408	19258										
HHIPL2	0	genome.wustl.edu	37	chr1	222695980	222695980	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctcgcttctgctctgctGatggcctcatcctgccactg	9	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	222695980	222695980	G	A	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	missense	c.2138	p.S713L	0.000	NULL	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	127	0	0	118	22	15.71	-	-	-	A	222695980	G	A	222695980	3	1	240	1	0	0	0	0	1	0	0	0	7145	1294	45	2	40	2	HHIPL2	1	222695980	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2535405	222695980	26554641	409	19259										
TAF1A	0	genome.wustl.edu	37	chr1	222757538	222757538	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaataactgtacatgtattCtgcagcttgctgccattggt	8	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	222757538	222757538	C	G	SNP	TAF1A	ENST00000350027	human	ensembl	69_37n	-1	known	missense	c.223	p.E75Q	0.675	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498	121	0	0	141	27	16.07	-	-	-	G	222757538	C	G	222757538	3	3	240	1	0	0	0	0	1	0	0	0	15611	922	32	2	1165	2	TAF1A	1	222757538	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	61558	222757538	26493083	410	19260										
MIA3	0	genome.wustl.edu	37	chr1	222824031	222824031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaacaaaatatgattctctCtgatgaagcaattaaatata	5	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	222824031	222824031	C	G	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.3776	p.S1259C	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	42	0	0	77	19	19.79	-	-	-	G	222824031	C	G	222824031	3	3	240	1	0	0	0	0	1	0	0	0	9636	913	32	2	3814	2	MIA3	1	222824031	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66493	222824031	26426590	411	19261										
MIA3	0	genome.wustl.edu	37	chr1	222828095	222828095	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggcagaaagtggagattCtgaatgagctctatcagcag	13	6	3	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	222828095	222828095	C	T	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	silent	c.4567	p.L1523	0.999	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	53	0	0	72	11	13.25	-	-	-	T	222828095	C	T	222828095	2	4	240	1	0	0	0	0	0	0	0	1	9636	912	32	2		2	MIA3	1	222828095	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4064	222828095	26422526	412	19262										
DISP1	0	genome.wustl.edu	37	chr1	223178469	223178469	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaactcagcaaaagcactGaaagtgacgctggctctgcc	11	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	223178469	223178469	G	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	nonsense	c.3730	p.E1244*	0.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	58	0	0	71	25	26.04	-	-	-	T	223178469	G	T	223178469	4	4	240	1	0	0	0	0	0	1	0	0	4575	1291	45	2	3756	2	DISP1	1	223178469	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	350374	223178469	26072152	413	19263										
DISP1	0	genome.wustl.edu	37	chr1	223178998	223178998	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagggaactctgtaaaaataGagacgtgagcaatctggaga	12	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	223178998	223178998	G	C	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.4259	p.R1420T	0.778	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	43	0	0	61	12	16.44	-	-	-	C	223178998	G	C	223178998	3	2	240	1	0	0	0	0	1	0	0	0	4575	942	33	2	4285	2	DISP1	1	223178998	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	529	223178998	26071623	414	19264										
TP53BP2	0	genome.wustl.edu	37	chr1	223987695	223987695	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctactgcatcaaacattGagaacggacgcactttcttc	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	223987695	223987695	G	A	SNP	TP53BP2	ENST00000464656	human	ensembl	69_37n	-1	known	nonsense	c.82	p.Q28*	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TP53BP2	HGNC	ENSG00000143514	175	0	0	182	40	18.02	-	-	-	A	223987695	G	A	223987695	4	1	240	1	0	0	0	0	0	1	0	0	16480	1294	45	2	2045	2	TP53BP2	1	223987695	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	808697	223987695	25262926	415	19265										
ENAH	0	genome.wustl.edu	37	chr1	225700669	225700669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatctgttttagatgaggcgGagttcacaccaatagcattc	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	225700669	225700669	G	T	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.1268	p.S423Y	0.800	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	118	0	0	135	33	19.64	-	-	-	T	225700669	G	T	225700669	3	4	240	1	0	0	0	0	1	0	0	0	5148	1174	41	2	539	2	ENAH	1	225700669	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1712974	225700669	23549952	416	19266										
ACBD3	0	genome.wustl.edu	37	chr1	226349284	226349284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatccgtctcctttcctcttCctcccgtcgaagcctttcct	4	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	226349284	226349284	C	T	SNP	ACBD3	ENST00000366812	human	ensembl	69_37n	-1	known	missense	c.676	p.E226K	1.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827	259	0	0	199	99	33.22	-	-	-	T	226349284	C	T	226349284	3	4	240	1	0	0	0	0	1	0	0	0	123	864	30	2	930	2	ACBD3	1	226349284	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	648615	226349284	22901337	417	19267										
GUK1	0	genome.wustl.edu	37	chr1	228335209	228335209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaccgatctgcggcccatCtacatctctgtgcagccgcc	9	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228335209	228335209	C	G	SNP	GUK1	ENST00000366722	human	ensembl	69_37n	1	known	missense	c.354	p.I118M	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin,tigrfam_Guanylate_kinase_sub	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin,tigrfam_Guanylate_kinase_sub	-	no_errors	GUK1	HGNC	ENSG00000143774	35	0	0	41	5	10.87	-	-	-	G	228335209	C	G	228335209	3	3	240	1	0	0	0	0	1	0	0	0	6951	903	32	2	435	2	GUK1	1	228335209	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1985925	228335209	20915412	418	19268										
OBSCN	0	genome.wustl.edu	37	chr1	228463619	228463619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacgtggagatccacgccGagggcgcccgccaccgcctg	14	16	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228463619	228463619	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.6112	p.E2038K	0.994	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	18	0	0	17	4	19.05	-	-	-	A	228463619	G	A	228463619	3	1	240	1	0	0	0	0	1	0	0	0	10885	1059	37	1	6190	1	OBSCN	1	228463619	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128410	228463619	20787002	419	19269										
OBSCN	0	genome.wustl.edu	37	chr1	228494273	228494273	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttacaggacctacaacgtGaagacactggcgaatacact	9	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228494273	228494273	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.11860	p.E3954K	0.983	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	16	0	0	12	5	29.41	-	-	-	A	228494273	G	A	228494273	3	1	240	1	0	0	0	0	1	0	0	0	10885	1291	45	2	12030	2	OBSCN	1	228494273	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30654	228494273	20756348	420	19270										
OBSCN	0	genome.wustl.edu	37	chr1	228527796	228527796	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcacggccatccaggagttCtacaaggtgcccatgcctga	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228527796	228527796	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.17409	p.F5803	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	38	0	0	55	19	25.68	-	-	-	T	228527796	C	T	228527796	2	4	240	1	0	0	0	0	0	0	0	1	10885	912	32	2		2	OBSCN	1	228527796	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33523	228527796	20722825	421	19271										
OBSCN	0	genome.wustl.edu	37	chr1	228528891	228528891	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccgcaaccacctggtaatCtgcaagccccggcgagactc	9	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228528891	228528891	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.17793	p.I5931	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	21	0	0	24	5	17.24	-	-	-	T	228528891	C	T	228528891	2	4	240	1	0	0	0	0	0	0	0	1	10885	903	32	2		2	OBSCN	1	228528891	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1095	228528891	20721730	422	19272										
HIST3H2A	0	genome.wustl.edu	37	chr1	228645350	228645350	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctcggcagtcaagtactCgagcaccgcggccagataga	12	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	228645350	228645350	C	G	SNP	HIST3H2A	ENST00000366695	human	ensembl	69_37n	-1	known	missense	c.169	p.E57Q	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST3H2A	HGNC	ENSG00000181218	60	0	0	52	14	21.21	-	-	-	G	228645350	C	G	228645350	3	3	240	1	0	0	0	0	1	0	0	0	7233	893	31	3	227	3	HIST3H2A	1	228645350	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	116459	228645350	20605271	423	19273										
ABCB10	0	genome.wustl.edu	37	chr1	229683295	229683295	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccggccctgagcccatctGagaggttttcagtcactgag	11	14	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	229683295	229683295	G	C	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	nonsense	c.872	p.S291*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	69	0	0	78	9	10.34	-	-	-	C	229683295	G	C	229683295	4	2	240	1	0	0	0	0	0	1	0	0	41	1294	45	2	1388	2	ABCB10	1	229683295	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1037945	229683295	19567326	424	19274										
ABCB10	0	genome.wustl.edu	37	chr1	229683354	229683354	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgatgagaggcggttaatCaattctcctgtgcgagtctt	11	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	229683354	229683354	C	G	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.813	p.L271F	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	94	0	0	91	17	15.74	-	-	-	G	229683354	C	G	229683354	3	3	240	1	0	0	0	0	1	0	0	0	41	825	29	2	1447	2	ABCB10	1	229683354	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59	229683354	19567267	425	19275										
PGBD5	0	genome.wustl.edu	37	chr1	230459353	230459353	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggtcttgtttggtttatGagaaatgaaatacctgagga	11	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	230459353	230459353	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.1483	p.H495Y	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	65	0	0	42	60	58.82	-	-	-	A	230459353	G	A	230459353	3	1	240	1	0	0	0	0	1	0	0	0	11858	1290	45	2	185	2	PGBD5	1	230459353	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	775999	230459353	18791268	426	19276										
PGBD5	0	genome.wustl.edu	37	chr1	230492712	230492712	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagggctggaccttgtaGagcccgtgcgtggtctggct	17	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	230492712	230492712	G	C	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	silent	c.777	p.L259	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	30	0	0	57	8	12.31	-	-	-	C	230492712	G	C	230492712	2	2	240	1	0	0	0	0	0	0	0	1	11858	929	33	2		2	PGBD5	1	230492712	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33359	230492712	18757909	427	19277										
PGBD5	0	genome.wustl.edu	37	chr1	230503869	230503869	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcaagttctgaccacacaGatggtggtggtgaggaggag	16	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	230503869	230503869	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.146	p.S49F	0.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	147	0	0	177	72	28.92	-	-	-	A	230503869	G	A	230503869	3	1	240	1	0	0	0	0	1	0	0	0	11858	957	33	2		2	PGBD5	1	230503869	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11157	230503869	18746752	428	19278										
TTC13	0	genome.wustl.edu	37	chr1	231057185	231057185	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccatgataaacaagaattCtgtctttaataaaatgaagt	5	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	231057185	231057185	C	T	SNP	TTC13	ENST00000366661	human	ensembl	69_37n	-1	known	missense	c.1880	p.R627K	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643	53	0	0	45	19	29.69	-	-	-	T	231057185	C	T	231057185	3	4	240	1	0	0	0	0	1	0	0	0	16777	913	32	2	734	2	TTC13	1	231057185	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	553316	231057185	18193436	429	19279										
TTC13	0	genome.wustl.edu	37	chr1	231060620	231060620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaatgtcaaacatgtctCtccactgcatcaaccgtgtc	6	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	231060620	231060620	C	G	SNP	TTC13	ENST00000366661	human	ensembl	69_37n	-1	known	missense	c.1688	p.R563T	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643	134	0	0	148	29	16.38	-	-	-	G	231060620	C	G	231060620	3	3	240	1	0	0	0	0	1	0	0	0	16777	913	32	2	934	2	TTC13	1	231060620	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3435	231060620	18190001	430	19280										
TSNAX	0	genome.wustl.edu	37	chr1	231672988	231672988	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaacttgatgcaaggcatGacaaatatgagagacttgtg	12	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	231672988	231672988	G	C	SNP	TSNAX	ENST00000366639	human	ensembl	69_37n	1	known	missense	c.151	p.D51H	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSNAX	HGNC	ENSG00000116918	91	0	0	94	24	20.17	-	-	-	C	231672988	G	C	231672988	3	2	240	1	0	0	0	0	1	0	0	0	16727	1290	45	2	161	2	TSNAX	1	231672988	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	612368	231672988	17577633	431	19281										
DISC1	0	genome.wustl.edu	37	chr1	231830382	231830382	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagagcgtgacatgcattCtttaccagacatggaccctg	10	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	231830382	231830382	C	G	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	missense	c.878	p.S293C	0.004	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	38	0	0	34	20	37.04	-	-	-	G	231830382	C	G	231830382	3	3	240	1	0	0	0	0	1	0	0	0	4574	913	32	2	884	2	DISC1	1	231830382	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157394	231830382	17420239	432	19282										
KIAA1383	0	genome.wustl.edu	37	chr1	232941079	232941079	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgagacccgctggagcgcttCcgcaaatctcgcgagatagc	12	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	232941079	232941079	C	A	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	missense	c.310	p.P104T	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	42	0	0	65	19	22.62	-	-	-	A	232941079	C	A	232941079	3	1	240	1	0	0	0	0	1	0	0	0	8280	855	30	2	312	2	KIAA1383	1	232941079	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1110697	232941079	16309542	433	19283										
PCNXL2	0	genome.wustl.edu	37	chr1	233136090	233136090	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagcttctgtggagcatGatgaccttgtactcgtcggc	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	233136090	233136090	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	silent	c.5289	p.I1763	1.000	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	33	0	0	33	35	51.47	-	-	-	A	233136090	G	A	233136090	2	1	240	1	0	0	0	0	0	0	0	1	11665	1280	45	2		2	PCNXL2	1	233136090	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	195011	233136090	16114531	434	19284										
PCNXL2	0	genome.wustl.edu	37	chr1	233353877	233353877	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtcagaaatccaaggaggGaaaccaggacaatgagtaaa	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	233353877	233353877	G	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.2558	p.S853C	0.979	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	66	0	0	79	22	21.78	-	-	-	C	233353877	G	C	233353877	3	2	240	1	0	0	0	0	1	0	0	0	11665	1174	41	2	3951	2	PCNXL2	1	233353877	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	217787	233353877	15896744	435	19285										
KCNK1	0	genome.wustl.edu	37	chr1	233802604	233802604	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgctgtcttctcagtcctgGaggatgactggaacttcctg	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	233802604	233802604	G	C	SNP	KCNK1	ENST00000366621	human	ensembl	69_37n	1	known	missense	c.619	p.E207Q	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK,pfam_Ion_trans_2	pirsf_2pore_dom_K_chnl_TASK/TWIK,pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl	-	no_errors	KCNK1	HGNC	ENSG00000135750	125	0	0	171	31	15.35	-	-	-	C	233802604	G	C	233802604	3	2	240	1	0	0	0	0	1	0	0	0	8112	1175	41	2	625	2	KCNK1	1	233802604	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	448727	233802604	15448017	436	19286										
SLC35F3	0	genome.wustl.edu	37	chr1	234458956	234458956	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctcaggacctcagagcaaGaacagaagagcccgcccttc	10	14	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	234458956	234458956	G	C	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	missense	c.1440	p.K480N	0.190	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	57	0	0	67	28	29.47	-	-	-	C	234458956	G	C	234458956	3	2	240	1	0	0	0	0	1	0	0	0	14679	933	33	2	1470	2	SLC35F3	1	234458956	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	656352	234458956	14791665	437	19287										
C1orf31	0	genome.wustl.edu	37	chr1	234510040	234510040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtctgctggggggcccggGatgagtactggaagtgttta	18	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	234510040	234510040	G	A	SNP	C1orf31	ENST00000366615	human	ensembl	69_37n	1	known	missense	c.277	p.D93N	0.998	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	C1orf31	HGNC	ENSG00000168275	67	0	0	66	15	18.52	-	-	-	A	234510040	G	A	234510040	3	1	240	1	0	0	0	0	1	0	0	0	2057	1174	41	2	193	2	C1orf31	1	234510040	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51084	234510040	14740581	438	19288										
GGPS1	0	genome.wustl.edu	37	chr1	235505938	235505938	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatactgtgtacattatcttGaggatgtaggttcttttgaa	9	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	235505938	235505938	G	A	SNP	GGPS1	ENST00000282841	human	ensembl	69_37n	1	known	missense	c.754	p.E252K	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904	45	0	0	39	22	36.07	-	-	-	A	235505938	G	A	235505938	3	1	240	1	0	0	0	0	1	0	0	0	6412	1291	45	2	764	2	GGPS1	1	235505938	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	995898	235505938	13744683	439	19289										
LYST	0	genome.wustl.edu	37	chr1	235884046	235884046	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaggatactgcatgagatCattgaaggatcggccagcat	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	235884046	235884046	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.9475	p.D3159N	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	83	0	0	76	14	15.38	-	-	-	T	235884046	C	T	235884046	3	4	240	1	0	0	0	0	1	0	0	0	9195	826	29	2	1986	2	LYST	1	235884046	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	378108	235884046	13366575	440	19290										
LYST	0	genome.wustl.edu	37	chr1	235969126	235969126	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaagggcttccaaaagtcGtatactttgaagtgaggtct	11	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	235969126	235969126	G	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.3310	p.R1104G	0.922	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	62	0	0	75	16	17.58	-	-	-	C	235969126	G	C	235969126	3	2	240	1	0	0	0	0	1	0	0	0	9195	1153	40	3	8287	3	LYST	1	235969126	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	85080	235969126	13281495	441	19291										
NID1	0	genome.wustl.edu	37	chr1	236205271	236205271	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtgctgctggtgaaaagtCtccactgccaactggaaaga	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	236205271	236205271	C	G	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.1074	p.E358D	0.090	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	39	0	0	67	15	18.29	-	-	-	G	236205271	C	G	236205271	3	3	240	1	0	0	0	0	1	0	0	0	10486	912	32	2	2737	2	NID1	1	236205271	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	236145	236205271	13045350	442	19292										
ACTN2	0	genome.wustl.edu	37	chr1	236898986	236898986	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccatcatgacgtacgtctCttgcttctaccacgcttttg	7	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	236898986	236898986	C	G	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.749	p.S250C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	116	0	0	120	19	13.67	-	-	-	G	236898986	C	G	236898986	3	3	240	1	0	0	0	0	1	0	0	0	205	913	32	2	779	2	ACTN2	1	236898986	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	693715	236898986	12351635	443	19293										
ACTN2	0	genome.wustl.edu	37	chr1	236908062	236908062	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggagcagatcgcagccatCgcgcaggagctcaagtatgt	14	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	236908062	236908062	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.1392	p.I464	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	30	0	0	42	9	17.65	-	-	-	T	236908062	C	T	236908062	2	4	240	1	0	0	0	0	0	0	0	1	205	874	31	1		1	ACTN2	1	236908062	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9076	236908062	12342559	444	19294										
MTR	0	genome.wustl.edu	37	chr1	236959008	236959008	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggagactcgacaacatgtCacccgcgctccaagacctgt	10	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	236959008	236959008	C	A	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	nonsense	c.5	p.S2*	0.001	NULL	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	23	0	0	16	8	33.33	-	-	-	A	236959008	C	A	236959008	4	1	240	1	0	0	0	0	0	1	0	0	10030	838	29	2	7	2	MTR	1	236959008	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	50946	236959008	12291613	445	19295										
RYR2	0	genome.wustl.edu	37	chr1	237982376	237982376	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttggagttcgtgctggagGagggatcggggatgaaatcg	19	4	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	237982376	237982376	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.14492	p.G4831V	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	205	0	0	225	46	16.97	-	-	-	T	237982376	G	T	237982376	3	4	240	1	0	0	0	0	1	0	0	0	13855	1174	41	2	14876	2	RYR2	1	237982376	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1023368	237982376	11268245	446	19296										
ZP4	0	genome.wustl.edu	37	chr1	238053779	238053779	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accccaagctattagtacagGaggagacgttgcctcctggt	11	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	238053779	238053779	G	C	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.157	p.P53A	0.063	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	33	0	0	38	9	19.15	-	-	-	C	238053779	G	C	238053779	3	2	240	1	0	0	0	0	1	0	0	0	18311	1174	41	2	1513	2	ZP4	1	238053779	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	71403	238053779	11196842	447	19297										
GREM2	0	genome.wustl.edu	37	chr1	240656740	240656740	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaccttcaccagcaccgcCaccaggaacaaggacaggga	10	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	240656740	240656740	C	G	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	silent	c.36	p.V12	1.000	pirsf_Gremlin_precursor	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	13	0	0	8	10	55.56	-	-	-	G	240656740	C	G	240656740	2	3	240	1	0	0	0	0	0	0	0	1	6813	581	21	4		4	GREM2	1	240656740	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2602961	240656740	8593881	448	19298										
KMO	0	genome.wustl.edu	37	chr1	241729866	241729866	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaccagtaatgatgtggtaGatttcttccagaaatacttt	7	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	241729866	241729866	G	C	SNP	KMO	ENST00000431245	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.997	-	-	-	no_errors	KMO	HGNC	ENSG00000117009	109	0	0	112	53	31.93	-	-	-	C	241729866	G	C	241729866	5	2	240	1	0	0	0	0	0	0	1	0	8477	942	33	2	797	2	KMO	1	241729866	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1073126	241729866	7520755	449	19299										
OPN3	0	genome.wustl.edu	37	chr1	241761207	241761207	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccaacagaccaggaaggtGaatatcattaaaaagcacat	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	241761207	241761207	G	T	SNP	OPN3	ENST00000366554	human	ensembl	69_37n	-1	known	missense	c.786	p.F262L	0.001	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPN3	HGNC	ENSG00000054277	139	1	0.71	101	71	41.28	-	-	-	T	241761207	G	T	241761207	3	4	240	1	0	0	0	0	1	0	0	0	10954	1281	45	2	430	2	OPN3	1	241761207	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31341	241761207	7489414	450	19300										
WDR64	0	genome.wustl.edu	37	chr1	241932740	241932740	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcttcactgtaaaccctGacttgcatcccaagcacttt	5	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	241932740	241932740	G	A	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	missense	c.2086	p.D696N	0.040	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	100	0	0	77	50	39.37	-	-	-	A	241932740	G	A	241932740	3	1	240	1	0	0	0	0	1	0	0	0	17412	1290	45	2	2148	2	WDR64	1	241932740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	171533	241932740	7317881	451	19301										
EXO1	0	genome.wustl.edu	37	chr1	242042296	242042296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagatgaagagtcctactCttttgagagcagcaaattta	8	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	242042296	242042296	C	G	SNP	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	missense	c.1760	p.S587C	0.011	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	90	0	0	97	51	34.46	-	-	-	G	242042296	C	G	242042296	3	3	240	1	0	0	0	0	1	0	0	0	5336	913	32	2	1798	2	EXO1	1	242042296	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	109556	242042296	7208325	452	19302										
PLD5	0	genome.wustl.edu	37	chr1	242451670	242451670	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatgtagcttacctgacaTgctgatggatgagtgtggtt	14	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	242451670	242451670	T	G	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.489	p.A163	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	119	0	0	143	25	14.88	-	-	-	G	242451670	T	G	242451670	2	3	240	1	0	0	0	0	0	0	0	1	12123	1451	51	5		5	PLD5	1	242451670	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	409374	242451670	6798951	453	19303										
CEP170	0	genome.wustl.edu	37	chr1	243349647	243349647	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtcttaagtgttcctcaaGagttgcacgtttgctacagc	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	243349647	243349647	G	A	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.1186	p.L396F	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	198	0	0	217	34	13.55	-	-	-	A	243349647	G	A	243349647	3	1	240	1	0	0	0	0	1	0	0	0	3279	942	33	2	3646	2	CEP170	1	243349647	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	897977	243349647	5900974	454	19304										
SDCCAG8	0	genome.wustl.edu	37	chr1	243493899	243493899	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaggcaggcggagcgacttGaaaaagaacttgcatctcag	13	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	243493899	243493899	G	C	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.1126	p.E376Q	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	43	0	0	43	9	16.98	-	-	-	C	243493899	G	C	243493899	3	2	240	1	0	0	0	0	1	0	0	0	14047	1291	45	2	1164	2	SDCCAG8	1	243493899	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	144252	243493899	5756722	455	19305										
C1orf101	0	genome.wustl.edu	37	chr1	244724219	244724219	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttagtgatatataatgaaGatacaaaacagtgggtttcc	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	244724219	244724219	G	C	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1279	p.D427H	0.957	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	98	0	0	115	26	18.44	-	-	-	C	244724219	G	C	244724219	3	2	240	1	0	0	0	0	1	0	0	0	1995	942	33	2	1317	2	C1orf101	1	244724219	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1230320	244724219	4526402	456	19306										
CNST	0	genome.wustl.edu	37	chr1	246811202	246811202	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagattccctttcctatgaaGataaccaagacgacgactcc	6	12	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	246811202	246811202	G	C	SNP	CNST	ENST00000366513	human	ensembl	69_37n	1	known	missense	c.1699	p.D567H	0.043	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	38	0	0	46	26	36.11	-	-	-	C	246811202	G	C	246811202	3	2	240	1	0	0	0	0	1	0	0	0	3664	942	33	2	1729	2	CNST	1	246811202	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2086983	246811202	2439419	457	19307										
AHCTF1	0	genome.wustl.edu	37	chr1	247004162	247004162	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggaagacagtttctttctGttccttccaagacctgttcc	7	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247004162	247004162	G	A	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.6774	p.N2258	0.981	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	124	0	0	129	47	26.7	-	-	-	A	247004162	G	A	247004162	2	1	240	1	0	0	0	0	0	0	0	1	408	1368	48	4		4	AHCTF1	1	247004162	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192960	247004162	2246459	458	19308										
AHCTF1	0	genome.wustl.edu	37	chr1	247013112	247013112	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catttcatctgtgcgttcttCtgatactgagtgcaatgaac	8	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247013112	247013112	C	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.6223	p.E2075Q	0.921	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	332	1	0.3	417	71	14.49	-	-	-	G	247013112	C	G	247013112	3	3	240	1	0	0	0	0	1	0	0	0	408	922	32	2	620	2	AHCTF1	1	247013112	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8950	247013112	2237509	459	19309										
AHCTF1	0	genome.wustl.edu	37	chr1	247025377	247025377	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctaaaggtgttgatcgaaGagtagacctcaggatggact	13	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247025377	247025377	G	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.3646	p.L1216V	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	98	0	0	125	24	16.11	-	-	-	C	247025377	G	C	247025377	3	2	240	1	0	0	0	0	1	0	0	0	408	942	33	2	3217	2	AHCTF1	1	247025377	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12265	247025377	2225244	460	19310										
ZNF124	0	genome.wustl.edu	37	chr1	247320335	247320335	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctccagtatgagttctttCatggtcacgaaggtgactgg	11	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247320335	247320335	C	G	SNP	ZNF124	ENST00000543802	human	ensembl	69_37n	-1	known	missense	c.589	p.E197Q	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418	71	0	0	92	19	17.12	-	-	-	G	247320335	C	G	247320335	3	3	240	1	0	0	0	0	1	0	0	0	17816	835	29	2	470	2	ZNF124	1	247320335	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	294958	247320335	1930286	461	19311										
NLRP3	0	genome.wustl.edu	37	chr1	247588671	247588671	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagatgcaggaggaggacttCgtgcaaagggccatggacta	16	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247588671	247588671	C	A	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.1926	p.F642L	0.986	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	83	0	0	61	34	35.79	-	-	-	A	247588671	C	A	247588671	3	1	240	1	0	0	0	0	1	0	0	0	10550	883	31	3	1936	3	NLRP3	1	247588671	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	268336	247588671	1661950	462	19312										
OR2G3	0	genome.wustl.edu	37	chr1	247768951	247768951	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggcttctcagaccaccctCgtctggaggctgttctcttt	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247768951	247768951	C	A	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.64	p.R22S	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	166	0	0	183	49	21.12	-	-	-	A	247768951	C	A	247768951	3	1	240	1	0	0	0	0	1	0	0	0	11072	884	31	3	66	3	OR2G3	1	247768951	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	180280	247768951	1481670	463	19313										
OR13G1	0	genome.wustl.edu	37	chr1	247835510	247835510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgggtttaatgtgggagtCacaagagtatagagtgcagc	14	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247835510	247835510	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	silent	c.834	p.V278	0.003	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	96	0	0	102	17	14.29	-	-	-	T	247835510	C	T	247835510	2	4	240	1	0	0	0	0	0	0	0	1	11015	813	29	2		2	OR13G1	1	247835510	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66559	247835510	1415111	464	19314										
OR14A16	0	genome.wustl.edu	37	chr1	247978165	247978165	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctttatggccttgtttctCaaactgtatataatgggatt	7	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	247978165	247978165	C	G	SNP	OR14A16	ENST00000357627	human	ensembl	69_37n	-1	known	missense	c.867	p.L289F	0.043	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772	104	0	0	77	27	25.96	-	-	-	G	247978165	C	G	247978165	3	3	240	1	0	0	0	0	1	0	0	0	11018	825	29	2	66	2	OR14A16	1	247978165	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	142655	247978165	1272456	465	19315										
OR11L1	0	genome.wustl.edu	37	chr1	248004539	248004539	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaatatggaggacacaatGaaaacatagggccccagtgt	10	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248004539	248004539	G	T	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.660	p.F220L	0.061	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	82	0	0	104	20	16.13	-	-	-	T	248004539	G	T	248004539	3	4	240	1	0	0	0	0	1	0	0	0	11003	1281	45	2	312	2	OR11L1	1	248004539	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26374	248004539	1246082	466	19316										
OR2M5	0	genome.wustl.edu	37	chr1	248309124	248309124	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcgagttattctggctgtCattcacatgggatctggaga	12	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248309124	248309124	C	G	SNP	OR2M5	ENST00000366476	human	ensembl	69_37n	1	known	silent	c.675	p.V225	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727	210	0	0	233	47	16.73	-	-	-	G	248309124	C	G	248309124	2	3	240	1	0	0	0	0	0	0	0	1	11086	813	29	2		2	OR2M5	1	248309124	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	304585	248309124	941497	467	19317										
OR2T12	0	genome.wustl.edu	37	chr1	248458516	248458516	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagtgggtggcagacagccGcatagcggtcataggccatg	17	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248458516	248458516	G	C	SNP	OR2T12	ENST00000317996	human	ensembl	69_37n	-1	known	missense	c.365	p.A122G	0.137	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201	77	0	0	100	38	27.54	-	-	-	C	248458516	G	C	248458516	3	2	240	1	0	0	0	0	1	0	0	0	11092	1087	38	3	600	3	OR2T12	1	248458516	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	149392	248458516	792105	468	19318										
OR14C36	0	genome.wustl.edu	37	chr1	248512625	248512625	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgacatcccctctctgctGaagctctcttgctctgacac	7	15	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248512625	248512625	G	A	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	silent	c.549	p.L183	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	142	0	0	175	33	15.87	-	-	-	A	248512625	G	A	248512625	2	1	240	1	0	0	0	0	0	0	0	1	11019	1277	45	2		2	OR14C36	1	248512625	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	54109	248512625	737996	469	19319										
OR2T10	0	genome.wustl.edu	37	chr1	248756692	248756692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtaacggagaggatggcaGatagccacatagcggtcata	14	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248756692	248756692	G	C	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	missense	c.378	p.I126M	0.999	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	88	0	0	122	21	14.69	-	-	-	C	248756692	G	C	248756692	3	2	240	1	0	0	0	0	1	0	0	0	11090	932	33	2	563	2	OR2T10	1	248756692	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	244067	248756692	493929	470	19320										
OR2T10	0	genome.wustl.edu	37	chr1	248757016	248757016	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagggtgtgagatctggctGaagattcccaacaggaaaaa	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248757016	248757016	G	A	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	silent	c.54	p.F18	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	13	0	0	11	5	31.25	-	-	-	A	248757016	G	A	248757016	2	1	240	1	0	0	0	0	0	0	0	1	11090	1281	45	2		2	OR2T10	1	248757016	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	324	248757016	493605	471	19321										
OR14I1	0	genome.wustl.edu	37	chr1	248845001	248845001	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcatcccagaaccaagcatGagctcagggccagggtcaaa	11	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	1	248845001	248845001	G	A	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	missense	c.605	p.S202L	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	62	0	0	79	16	16.84	-	-	-	A	248845001	G	A	248845001	3	1	240	1	0	0	0	0	1	0	0	0	11020	1294	45	2	334	2	OR14I1	1	248845001	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	87985	248845001	405620	472	19322										
TPO	0	genome.wustl.edu	37	chr2	1497795	1497795	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgggaagcagatgaaggctCtgcgggacggtgactggtac	17	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	1497795	1497795	C	G	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	missense	c.1990	p.L664V	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	49	0	0	38	8	17.39	-	-	-	G	1497795	C	G	1497795	3	3	240	1	0	0	0	0	1	0	0	0	16506	912	32	2	2028	2	TPO	2	1497795	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		1497795	241701578	473	19323										
C2orf48	0	genome.wustl.edu	37	chr2	10350459	10350459	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaggatctcaaccagttCtctcactgcagagtctggag	9	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	10350459	10350459	C	A	SNP	C2orf48	ENST00000381786	human	ensembl	69_37n	1	known	missense	c.216	p.F72L	0.000	NULL	NULL	-	no_errors	C2orf48	HGNC	ENSG00000163009	61	0	0	65	12	15.58	-	-	-	A	10350459	C	A	10350459	3	1	240	1	0	0	0	0	1	0	0	0	2190	912	32	2	226	2	C2orf48	2	10350459	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8852664	10350459	232848914	474	19324										
HPCAL1	0	genome.wustl.edu	37	chr2	10563154	10563154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgaagatgccggaggatGagtccaccccggagaagcgc	15	10	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	10563154	10563154	G	A	SNP	HPCAL1	ENST00000307845	human	ensembl	69_37n	1	known	missense	c.424	p.E142K	1.000	pfam_SPARC/Testican_Ca-bd-dom,prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756	47	0	0	47	16	25.4	-	-	-	A	10563154	G	A	10563154	3	1	240	1	0	0	0	0	1	0	0	0	7381	1291	45	2	430	2	HPCAL1	2	10563154	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	212695	10563154	232636219	475	19325										
ROCK2	0	genome.wustl.edu	37	chr2	11332423	11332423	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaaccgactaacccacttCtgctgctcttctgtagaatt	5	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	11332423	11332423	C	T	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	silent	c.4014	p.Q1338	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	168	0	0	92	28	23.33	-	-	-	T	11332423	C	T	11332423	2	4	240	1	0	0	0	0	0	0	0	1	13604	912	32	2		2	ROCK2	2	11332423	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	769269	11332423	231866950	476	19326										
GREB1	0	genome.wustl.edu	37	chr2	11718469	11718469	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtacttgttccagttccctCttcccagccctggagagcac	8	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	11718469	11718469	C	G	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.684	p.L228	0.842	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	65	0	0	32	28	46.67	-	-	-	G	11718469	C	G	11718469	2	3	240	1	0	0	0	0	0	0	0	1	6811	900	32	2		2	GREB1	2	11718469	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	386046	11718469	231480904	477	19327										
FAM49A	0	genome.wustl.edu	37	chr2	16742328	16742328	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtggtgttctctattggcaGagttttgttctaaatgggag	13	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	16742328	16742328	G	A	SNP	FAM49A	ENST00000355549	human	ensembl	69_37n	-1	known	silent	c.640	p.L214	0.947	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872	247	0	0	180	65	26.53	-	-	-	A	16742328	G	A	16742328	2	1	240	1	0	0	0	0	0	0	0	1	5621	933	33	2		2	FAM49A	2	16742328	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5023859	16742328	226457045	478	19328										
MSGN1	0	genome.wustl.edu	37	chr2	17998319	17998319	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaagtacatcggggaactCacagacctccttaaccgcgg	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	17998319	17998319	C	T	SNP	MSGN1	ENST00000281047	human	ensembl	69_37n	1	known	silent	c.534	p.L178	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MSGN1	HGNC	ENSG00000151379	20	0	0	8	11	57.89	-	-	-	T	17998319	C	T	17998319	2	4	240	1	0	0	0	0	0	0	0	1	9941	813	29	2		2	MSGN1	2	17998319	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1255991	17998319	225201054	479	19329										
MSGN1	0	genome.wustl.edu	37	chr2	17998342	17998342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacctccttaaccgcggcaGagagcccagagcccagagcg	12	15	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	17998342	17998342	G	C	SNP	MSGN1	ENST00000281047	human	ensembl	69_37n	1	known	missense	c.557	p.R186T	0.098	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MSGN1	HGNC	ENSG00000151379	19	0	0	14	6	30	-	-	-	C	17998342	G	C	17998342	3	2	240	1	0	0	0	0	1	0	0	0	9941	942	33	2	559	2	MSGN1	2	17998342	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23	17998342	225201031	480	19330										
OSR1	0	genome.wustl.edu	37	chr2	19553095	19553095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttgtgggcttcttttctgGagacagcttggtcacgtcga	12	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	19553095	19553095	G	C	SNP	OSR1	ENST00000272223	human	ensembl	69_37n	-1	known	missense	c.472	p.P158A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR1	HGNC	ENSG00000143867	91	0	0	61	15	19.74	-	-	-	C	19553095	G	C	19553095	3	2	240	1	0	0	0	0	1	0	0	0	11366	1174	41	2	336	2	OSR1	2	19553095	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1554753	19553095	223646278	481	19331										
TTC32	0	genome.wustl.edu	37	chr2	20101480	20101480	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttacctcccgggactctCgtcgctggaggccgcgcaag	13	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	20101480	20101480	C	A	SNP	TTC32	ENST00000333610	human	ensembl	69_37n	-1	known	nonsense	c.136	p.E46*	0.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC32	HGNC	ENSG00000183891	50	0	0	59	23	28.05	-	-	-	A	20101480	C	A	20101480	4	1	240	1	0	0	0	0	0	1	0	0	16798	893	31	3	331	3	TTC32	2	20101480	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	548385	20101480	223097893	482	19332										
WDR35	0	genome.wustl.edu	37	chr2	20130254	20130254	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctccatgcattatctgtGaaacgatctgttgtagacag	8	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	20130254	20130254	G	C	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	missense	c.3057	p.F1019L	0.998	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	66	0	0	52	18	25.71	-	-	-	C	20130254	G	C	20130254	3	2	240	1	0	0	0	0	1	0	0	0	17386	1281	45	2	500	2	WDR35	2	20130254	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	28774	20130254	223069119	483	19333										
WDR35	0	genome.wustl.edu	37	chr2	20141591	20141591	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaatatatccagaggtctGaatgggttcctttaaagaca	8	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	20141591	20141591	G	A	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	nonsense	c.1888	p.Q630*	1.000	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	56	0	0	47	10	17.54	-	-	-	A	20141591	G	A	20141591	4	1	240	1	0	0	0	0	0	1	0	0	17386	1299	45	2	1701	2	WDR35	2	20141591	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11337	20141591	223057782	484	19334										
HS1BP3	0	genome.wustl.edu	37	chr2	20845199	20845199	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccacgtgtccagacatcatCttgccccgtacctcctggtg	8	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	20845199	20845199	C	G	SNP	HS1BP3	ENST00000304031	human	ensembl	69_37n	-1	known	missense	c.99	p.K33N	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	HS1BP3	HGNC	ENSG00000118960	40	0	0	44	13	22.81	-	-	-	G	20845199	C	G	20845199	3	3	240	1	0	0	0	0	1	0	0	0	7412	912	32	2	1103	2	HS1BP3	2	20845199	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	703608	20845199	222354174	485	19335										
GDF7	0	genome.wustl.edu	37	chr2	20871056	20871056	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaactccatggcaccagaCgcggcgccggcctcctgctg	11	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	20871056	20871056	C	T	SNP	GDF7	ENST00000272224	human	ensembl	69_37n	1	known	silent	c.1224	p.D408	0.897	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF7	HGNC	ENSG00000143869	24	0	0	20	10	33.33	-	-	-	T	20871056	C	T	20871056	2	4	240	1	0	0	0	0	0	0	0	1	6370	535	19	1		1	GDF7	2	20871056	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25857	20871056	222328317	486	19336										
APOB	0	genome.wustl.edu	37	chr2	21230001	21230001	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagtgtatccaggaatttGaaaggtcctggggagctcgt	13	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	21230001	21230001	G	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.9739	p.Q3247E	0.979	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	48	0	0	35	14	28.57	-	-	-	C	21230001	G	C	21230001	3	2	240	1	0	0	0	0	1	0	0	0	787	1299	45	2	3968	2	APOB	2	21230001	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	358945	21230001	221969372	487	19337										
APOB	0	genome.wustl.edu	37	chr2	21236248	21236248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagtagggacttggaactCtcgagatggcagatggaatc	13	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	21236248	21236248	C	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.4000	p.E1334Q	0.843	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	111	0	0	74	34	31.48	-	-	-	G	21236248	C	G	21236248	3	3	240	1	0	0	0	0	1	0	0	0	787	922	32	2	9711	2	APOB	2	21236248	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6247	21236248	221963125	488	19338										
TP53I3	0	genome.wustl.edu	37	chr2	24302332	24302332	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accttattgtccctagacctCagcaaactggtgatcagact	7	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	24302332	24302332	C	G	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	silent	c.798	p.L266	0.978	pfam_ADH_C,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	127	0	0	94	28	22.95	-	-	-	G	24302332	C	G	24302332	2	3	240	1	0	0	0	0	0	0	0	1	16483	813	29	2		2	TP53I3	2	24302332	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3066084	24302332	218897041	489	19339										
ITSN2	0	genome.wustl.edu	37	chr2	24427247	24427247	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggtcctggtggtgtagctCtgggagcccatgctgatttc	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	24427247	24427247	C	G	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.4803	p.Q1601H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	144	0	0	143	31	17.82	-	-	-	G	24427247	C	G	24427247	3	3	240	1	0	0	0	0	1	0	0	0	7981	912	32	2	298	2	ITSN2	2	24427247	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	124915	24427247	218772126	490	19340										
NCOA1	0	genome.wustl.edu	37	chr2	24896236	24896236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaagtttctttattatagaGaaatcaacaactgatgacga	6	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	24896236	24896236	G	C	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	missense	c.258	p.E86D	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	71	0	0	40	18	31.03	-	-	-	C	24896236	G	C	24896236	3	2	240	1	0	0	0	0	1	0	0	0	10300	956	33	2	268	2	NCOA1	2	24896236	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	468989	24896236	218303137	491	19341										
CENPO	0	genome.wustl.edu	37	chr2	25037353	25037353	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagccattctgcaggcatatCattttacaggttttgtttgt	8	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25037353	25037353	C	G	SNP	CENPO	ENST00000260662	human	ensembl	69_37n	1	known	missense	c.325	p.H109D	0.979	NULL	pfam_Centromere_CenpO	-	no_errors	CENPO	HGNC	ENSG00000138092	93	0	0	60	26	30.23	-	-	-	G	25037353	C	G	25037353	3	3	240	1	0	0	0	0	1	0	0	0	3268	826	29	2	335	2	CENPO	2	25037353	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	141117	25037353	218162020	492	19342										
DNAJC27	0	genome.wustl.edu	37	chr2	25174349	25174349	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatctgcttgttctttggtGaaactagcactgctattggt	10	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25174349	25174349	G	A	SNP	DNAJC27	ENST00000264711	human	ensembl	69_37n	-1	known	silent	c.603	p.F201	1.000	superfamily_DnaJ_N,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_DnaJ_N,pfam_ProtSyn_GTP-bd,superfamily_DnaJ_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_DnaJ_N,pfscan_DnaJ_N,prints_Small_GTPase,prints_Hsp_DnaJ,tigrfam_Small_GTP-bd_dom	-	no_errors	DNAJC27	HGNC	ENSG00000115137	108	0	0	84	26	23.64	-	-	-	A	25174349	G	A	25174349	2	1	240	1	0	0	0	0	0	0	0	1	4680	1281	45	2		2	DNAJC27	2	25174349	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	136996	25174349	218025024	493	19343										
DNMT3A	0	genome.wustl.edu	37	chr2	25469176	25469176	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctttgtagggattcttctCttctggaggaggaaagcagg	13	6	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25469176	25469176	C	G	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.1282	p.E428Q	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	47	0	0	47	9	16.07	-	-	-	G	25469176	C	G	25469176	3	3	240	1	0	0	0	0	1	0	0	0	4711	922	32	2	1508	2	DNMT3A	2	25469176	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	294827	25469176	217730197	494	19344										
DNMT3A	0	genome.wustl.edu	37	chr2	25470018	25470018	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcagcggcatcagcttctCaacacacacctggggggaca	11	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25470018	25470018	C	T	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.1024	p.E342K	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	52	0	0	37	9	19.57	-	-	-	T	25470018	C	T	25470018	3	4	240	1	0	0	0	0	1	0	0	0	4711	835	29	2	1774	2	DNMT3A	2	25470018	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	842	25470018	217729355	495	19345										
ASXL2	0	genome.wustl.edu	37	chr2	25966074	25966074	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtcaatgctggagtccctCagctccttagctgaaaagag	11	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25966074	25966074	C	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	silent	c.3132	p.L1044	0.997	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	130	0	0	100	41	29.08	-	-	-	T	25966074	C	T	25966074	2	4	240	1	0	0	0	0	0	0	0	1	1071	813	29	2		2	ASXL2	2	25966074	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	496056	25966074	217233299	496	19346										
ASXL2	0	genome.wustl.edu	37	chr2	25978935	25978935	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgctgaagtgaagaattCattgttaagggctgagccat	13	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	25978935	25978935	C	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.988	p.E330K	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	53	0	0	33	21	38.89	-	-	-	T	25978935	C	T	25978935	3	4	240	1	0	0	0	0	1	0	0	0	1071	835	29	2	3335	2	ASXL2	2	25978935	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12861	25978935	217220438	497	19347										
RAB10	0	genome.wustl.edu	37	chr2	26257507	26257507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagacgtacgacctgcttttCaagctgctcctgatcgggga	11	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	26257507	26257507	C	G	SNP	RAB10	ENST00000264710	human	ensembl	69_37n	1	known	missense	c.30	p.F10L	1.000	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB10	HGNC	ENSG00000084733	56	0	0	40	17	29.82	-	-	-	G	26257507	C	G	26257507	3	3	240	1	0	0	0	0	1	0	0	0	12973	825	29	2	32	2	RAB10	2	26257507	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	278572	26257507	216941866	498	19348										
GPR113	0	genome.wustl.edu	37	chr2	26541774	26541774	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgctttgtctctcccaatCaggggtccccattgtcgcct	8	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	26541774	26541774	C	T	SNP	GPR113	ENST00000311519	human	ensembl	69_37n	-1	putative	silent	c.144	p.L48	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	150	0	0	134	51	27.57	-	-	-	T	26541774	C	T	26541774	2	4	240	1	0	0	0	0	0	0	0	1	6680	813	29	2		2	GPR113	2	26541774	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	284267	26541774	216657599	499	19349										
CGREF1	0	genome.wustl.edu	37	chr2	27325082	27325082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatggagggcaaagaggtaGaggagaactaaagagaagag	16	3	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27325082	27325082	G	C	SNP	CGREF1	ENST00000440612	human	ensembl	69_37n	-1	known	missense	c.154	p.L52V	0.993	NULL	NULL	-	no_errors	CGREF1	HGNC	ENSG00000138028	46	0	0	50	13	20.63	-	-	-	C	27325082	G	C	27325082	3	2	240	1	0	0	0	0	1	0	0	0	3334	929	33	2	931	2	CGREF1	2	27325082	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	783308	27325082	215874291	500	19350										
PREB	0	genome.wustl.edu	37	chr2	27356068	27356068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacacaactttctgcagtgGatcggagctaaagtctgtct	10	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27356068	27356068	G	C	SNP	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	missense	c.463	p.P155A	0.991	smart_WD40_repeat	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	157	0	0	123	45	26.79	-	-	-	C	27356068	G	C	27356068	3	2	240	1	0	0	0	0	1	0	0	0	12551	1174	41	2	818	2	PREB	2	27356068	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30986	27356068	215843305	501	19351										
CAD	0	genome.wustl.edu	37	chr2	27455994	27455994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgatcgactctactttgatGagatctcttttgaggtgagg	12	6	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27455994	27455994	G	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.2977	p.E993K	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	174	0	0	168	28	14.14	-	-	-	A	27455994	G	A	27455994	3	1	240	1	0	0	0	0	1	0	0	0	2590	1291	45	2	3051	2	CAD	2	27455994	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99926	27455994	215743379	502	19352										
CAD	0	genome.wustl.edu	37	chr2	27456324	27456324	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaagccattgactcggctGagaaccgtttcaagttttcc	9	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27456324	27456324	G	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.3136	p.E1046K	1.000	superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	37	0	0	27	10	27.03	-	-	-	A	27456324	G	A	27456324	3	1	240	1	0	0	0	0	1	0	0	0	2590	1291	45	2	3214	2	CAD	2	27456324	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	330	27456324	215743049	503	19353										
CAD	0	genome.wustl.edu	37	chr2	27464811	27464811	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctccatgttctatgaagtGagcacacggaccagcagctc	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27464811	27464811	G	C	SNP	CAD	ENST00000456311	human	ensembl	69_37n	1	novel	missense	c.829	p.E277Q	1.000	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Metal-dep_hydrolase_composite,superfamily_Asp/Orn_carbamoylTrfase	-	no_start_codon:pseudogene:no_stop_codon	CAD	HGNC	ENSG00000084774	12	0	0	11	6	35.29	-	-	-	C	27464811	G	C	27464811	3	2	240	1	0	0	0	0	1	0	0	0	2590	1277	45	2	6070	2	CAD	2	27464811	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8487	27464811	215734562	504	19354										
SLC30A3	0	genome.wustl.edu	37	chr2	27479271	27479271	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccgatggccaggtgtgcaGaggcaacatggtaagtgagc	15	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27479271	27479271	G	A	SNP	SLC30A3	ENST00000233535	human	ensembl	69_37n	-1	known	missense	c.1001	p.S334F	0.997	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194	33	0	0	28	9	24.32	-	-	-	A	27479271	G	A	27479271	3	1	240	1	0	0	0	0	1	0	0	0	14645	942	33	2	173	2	SLC30A3	2	27479271	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14460	27479271	215720102	505	19355										
DNAJC5G	0	genome.wustl.edu	37	chr2	27500865	27500865	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagatactattttattctGaatagttgttggttcaaggt	9	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27500865	27500865	G	A	SNP	DNAJC5G	ENST00000296097	human	ensembl	69_37n	1	known	silent	c.357	p.L119	0.992	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5G	HGNC	ENSG00000163793	47	0	0	43	9	17.31	-	-	-	A	27500865	G	A	27500865	2	1	240	1	0	0	0	0	0	0	0	1	4687	1277	45	2		2	DNAJC5G	2	27500865	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21594	27500865	215698508	506	19356										
TRIM54	0	genome.wustl.edu	37	chr2	27527902	27527902	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgatcacacagatggagGaggtgtgccagactatcgag	14	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27527902	27527902	G	T	SNP	TRIM54	ENST00000296098	human	ensembl	69_37n	1	known	nonsense	c.715	p.E239*	1.000	superfamily_Chorismate_mutase_type_II	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100	59	0	0	59	18	23.38	-	-	-	T	27527902	G	T	27527902	4	4	240	1	0	0	0	0	0	1	0	0	16624	1175	41	2	733	2	TRIM54	2	27527902	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27037	27527902	215671471	507	19357										
GTF3C2	0	genome.wustl.edu	37	chr2	27551026	27551026	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaccttcaggactgtcctGatacggtatcagatctgctt	10	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27551026	27551026	G	A	SNP	GTF3C2	ENST00000264720	human	ensembl	69_37n	-1	known	nonsense	c.2287	p.Q763*	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207	63	0	0	52	11	17.46	-	-	-	A	27551026	G	A	27551026	4	1	240	1	0	0	0	0	0	1	0	0	6924	1299	45	2	460	2	GTF3C2	2	27551026	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23124	27551026	215648347	508	19358										
SNX17	0	genome.wustl.edu	37	chr2	27597954	27597954	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagatattgagcgtgggtgGatcttggtcaccaaggaaca	13	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27597954	27597954	G	T	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	missense	c.708	p.W236C	1.000	superfamily_FERM_central	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	42	0	0	35	9	20.45	-	-	-	T	27597954	G	T	27597954	3	4	240	1	0	0	0	0	1	0	0	0	14977	1183	41	2	742	2	SNX17	2	27597954	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46928	27597954	215601419	509	19359										
IFT172	0	genome.wustl.edu	37	chr2	27672601	27672601	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgcttcgccttgttccactCctcaccctcgatgaaagcat	6	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27672601	27672601	C	G	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.4117	p.E1373Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	95	0	0	75	20	21.05	-	-	-	G	27672601	C	G	27672601	3	3	240	1	0	0	0	0	1	0	0	0	7611	864	30	2	1180	2	IFT172	2	27672601	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	74647	27672601	215526772	510	19360										
IFT172	0	genome.wustl.edu	37	chr2	27706176	27706176	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgactctccagagccttCatcatcaaagaaatacctaa	5	12	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27706176	27706176	C	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	nonsense	c.550	p.E184*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	90	0	0	84	24	22.22	-	-	-	A	27706176	C	A	27706176	4	1	240	1	0	0	0	0	0	1	0	0	7611	835	29	2	4867	2	IFT172	2	27706176	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33575	27706176	215493197	511	19361										
C2orf16	0	genome.wustl.edu	37	chr2	27800157	27800157	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaactatggaattgctctctCagtcacggccccgagttaag	9	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27800157	27800157	C	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.718	p.Q240K	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	35	0	0	30	6	16.67	-	-	-	A	27800157	C	A	27800157	3	1	240	1	0	0	0	0	1	0	0	0	2177	827	29	2	720	2	C2orf16	2	27800157	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	93981	27800157	215399216	512	19362										
C2orf16	0	genome.wustl.edu	37	chr2	27805229	27805229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccattgcagtccctctgaGaggagccgacgcagtcccct	10	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	27805229	27805229	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.5790	p.E1930D	0.100	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	36	0	0	18	8	30.77	-	-	-	C	27805229	G	C	27805229	3	2	240	1	0	0	0	0	1	0	0	0	2177	933	33	2	5792	2	C2orf16	2	27805229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5072	27805229	215394144	513	19363										
PLB1	0	genome.wustl.edu	37	chr2	28836897	28836897	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtgtttttttttctcttaGaatgagcccttcctgagaac	7	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	28836897	28836897	G	C	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	splice_site	c.3097-1	e43-1	0.253	-	-	-	no_errors	PLB1	HGNC	ENSG00000163803	105	0	0	74	19	20.43	-	-	-	C	28836897	G	C	28836897	5	2	240	1	0	0	0	0	0	0	1	0	12098	956	33	2	3336	2	PLB1	2	28836897	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1031668	28836897	214362476	514	19364										
TRMT61B	0	genome.wustl.edu	37	chr2	29083989	29083989	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttagaaaacttactgcgtCaaatgttaaagattttatgt	7	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	29083989	29083989	C	G	SNP	TRMT61B	ENST00000306108	human	ensembl	69_37n	-1	known	missense	c.988	p.D330H	1.000	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	-	no_errors	TRMT61B	HGNC	ENSG00000171103	121	0	0	81	24	22.86	-	-	-	G	29083989	C	G	29083989	3	3	240	1	0	0	0	0	1	0	0	0	16666	826	29	2	465	2	TRMT61B	2	29083989	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	247092	29083989	214115384	515	19365										
C2orf71	0	genome.wustl.edu	37	chr2	29296731	29296731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtactactttcctcactctCatctccagaaaagtctgccc	5	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	29296731	29296731	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.397	p.E133K	0.106	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	212	0	0	197	59	22.96	-	-	-	T	29296731	C	T	29296731	3	4	240	1	0	0	0	0	1	0	0	0	2211	835	29	2	3477	2	C2orf71	2	29296731	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	212742	29296731	213902642	516	19366										
GALNT14	0	genome.wustl.edu	37	chr2	31152341	31152341	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccatccacacttcagctgtCcgcttggtgttcctgggaaa	9	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	31152341	31152341	C	T	SNP	GALNT14	ENST00000349752	human	ensembl	69_37n	-1	known	silent	c.1071	p.R357	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089	133	0	0	102	23	18.4	-	-	-	T	31152341	C	T	31152341	2	4	240	1	0	0	0	0	0	0	0	1	6262	842	30	2		2	GALNT14	2	31152341	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1855610	31152341	212047032	517	19367										
NLRC4	0	genome.wustl.edu	37	chr2	32460539	32460539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgacgagttgtgggacctCctccaaatgtttcaacaggc	10	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	32460539	32460539	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.2713	p.E905K	0.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	115	0	0	79	24	23.3	-	-	-	T	32460539	C	T	32460539	3	4	240	1	0	0	0	0	1	0	0	0	10541	864	30	2	369	2	NLRC4	2	32460539	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1308198	32460539	210738834	518	19368										
NLRC4	0	genome.wustl.edu	37	chr2	32466148	32466148	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctttatgttatccattatGagctttgtaaggttcttcaa	6	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	32466148	32466148	G	C	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	silent	c.2304	p.L768	0.232	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	284	0	0	167	57	25.45	-	-	-	C	32466148	G	C	32466148	2	2	240	1	0	0	0	0	0	0	0	1	10541	1277	45	2		2	NLRC4	2	32466148	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5609	32466148	210733225	519	19369										
BIRC6	0	genome.wustl.edu	37	chr2	32770731	32770731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatattcttcaatctccatCagccaatgtgcttccaaccc	3	15	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	32770731	32770731	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.12614	p.S4205L	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	177	0	0	103	39	27.46	-	-	-	T	32770731	C	T	32770731	3	4	240	1	0	0	0	0	1	0	0	0	1443	838	29	2	12864	2	BIRC6	2	32770731	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	304583	32770731	210428642	520	19370										
BIRC6	0	genome.wustl.edu	37	chr2	32800342	32800342	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctacagagaacggtgaaGaggaagaagaacagtcagaa	12	5	2	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	32800342	32800342	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.13264	p.E4422K	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	99	0	0	73	15	17.05	-	-	-	A	32800342	G	A	32800342	3	1	240	1	0	0	0	0	1	0	0	0	1443	943	33	2	13526	2	BIRC6	2	32800342	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29611	32800342	210399031	521	19371										
LTBP1	0	genome.wustl.edu	37	chr2	33359906	33359906	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggtctttactccgagcatCtgtaaagtgacctgcaccaa	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	33359906	33359906	C	T	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	silent	c.1080	p.I360	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	40	0	0	39	12	23.53	-	-	-	T	33359906	C	T	33359906	2	4	240	1	0	0	0	0	0	0	0	1	9139	903	32	2		2	LTBP1	2	33359906	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	559564	33359906	209839467	522	19372										
LTBP1	0	genome.wustl.edu	37	chr2	33413719	33413719	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtccagatacatcaggtttCaagaattgatggcccaacag	9	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	33413719	33413719	C	G	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	nonsense	c.1502	p.S501*	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	64	0	0	54	21	28	-	-	-	G	33413719	C	G	33413719	4	3	240	1	0	0	0	0	0	1	0	0	9139	838	29	2	1583	2	LTBP1	2	33413719	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53813	33413719	209785654	523	19373										
EIF2AK2	0	genome.wustl.edu	37	chr2	37374076	37374076	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgatctaccttcaccttCtggaaattctcttccatcta	3	13	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	37374076	37374076	C	T	SNP	EIF2AK2	ENST00000233057	human	ensembl	69_37n	-1	known	missense	c.160	p.E54K	0.445	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ds-RNA-bd,superfamily_Kinase-like_dom,smart_Ds-RNA-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ds-RNA-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332	199	0	0	134	42	23.86	-	-	-	T	37374076	C	T	37374076	3	4	240	1	0	0	0	0	1	0	0	0	5032	922	32	2	1551	2	EIF2AK2	2	37374076	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3960357	37374076	205825297	524	19374										
EIF2AK2	0	genome.wustl.edu	37	chr2	37374920	37374920	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgtattaagttcctccatGaagaaacctgctgaaagatc	7	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	37374920	37374920	G	C	SNP	EIF2AK2	ENST00000233057	human	ensembl	69_37n	-1	known	missense	c.30	p.F10L	0.015	smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ds-RNA-bd,superfamily_Kinase-like_dom,smart_Ds-RNA-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ds-RNA-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332	114	0	0	86	29	25.22	-	-	-	C	37374920	G	C	37374920	3	2	240	1	0	0	0	0	1	0	0	0	5032	1281	45	2	1685	2	EIF2AK2	2	37374920	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	844	37374920	205824453	525	19375										
PRKD3	0	genome.wustl.edu	37	chr2	37516622	37516622	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacagttatttggaatcttGaaggcacatcgtttatggta	9	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	37516622	37516622	G	C	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	missense	c.594	p.F198L	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	105	0	0	64	22	25.58	-	-	-	C	37516622	G	C	37516622	3	2	240	1	0	0	0	0	1	0	0	0	12601	1281	45	2	2138	2	PRKD3	2	37516622	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	141702	37516622	205682751	526	19376										
ATL2	0	genome.wustl.edu	37	chr2	38523229	38523229	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccttatgttttcctccatCaaattatcacccaggggctt	6	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	38523229	38523229	C	G	SNP	ATL2	ENST00000378954	human	ensembl	69_37n	-1	known	missense	c.1659	p.L553F	1.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787	158	0	0	111	34	23.45	-	-	-	G	38523229	C	G	38523229	3	3	240	1	0	0	0	0	1	0	0	0	1111	825	29	2	96	2	ATL2	2	38523229	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1006607	38523229	204676144	527	19377										
ATL2	0	genome.wustl.edu	37	chr2	38570580	38570580	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggtcatcttcatgagcaaGaacaatctgtactggacatg	9	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	38570580	38570580	G	C	SNP	ATL2	ENST00000378954	human	ensembl	69_37n	-1	known	missense	c.193	p.L65V	0.683	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787	73	0	0	74	11	12.94	-	-	-	C	38570580	G	C	38570580	3	2	240	1	0	0	0	0	1	0	0	0	1111	942	33	2	1718	2	ATL2	2	38570580	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	47351	38570580	204628793	528	19378										
SLC8A1	0	genome.wustl.edu	37	chr2	40402401	40402401	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaagaaatgaaatgcttacCaagctcattcaataacaggg	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	40402401	40402401	C	G	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1936	p.G646R	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	63	0	0	46	17	26.98	-	-	-	G	40402401	C	G	40402401	3	3	240	1	0	0	0	0	1	0	0	0	14795	608	21	4	1017	4	SLC8A1	2	40402401	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1831821	40402401	202796972	529	19379										
EML4	0	genome.wustl.edu	37	chr2	42544566	42544566	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgacctattttattctaGatggtaccttcctggctgta	7	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	42544566	42544566	G	C	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	splice_site	c.2057-1	e19-1	1.000	-	-	-	no_errors	EML4	HGNC	ENSG00000143924	138	0	0	106	30	22.06	-	-	-	C	42544566	G	C	42544566	5	2	240	1	0	0	0	0	0	0	1	0	5136	956	33	2	2130	2	EML4	2	42544566	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2142165	42544566	200654807	530	19380										
THADA	0	genome.wustl.edu	37	chr2	43787492	43787492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaacgaccaacatcaatatCatgactcagctgatatactg	6	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	43787492	43787492	C	T	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.2344	p.D782N	1.000	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	84	0	0	95	24	20.17	-	-	-	T	43787492	C	T	43787492	3	4	240	1	0	0	0	0	1	0	0	0	15935	826	29	2	3609	2	THADA	2	43787492	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1242926	43787492	199411881	531	19381										
THADA	0	genome.wustl.edu	37	chr2	43819177	43819177	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagatttttcccttccacatCagcaaaagctatataacata	3	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	43819177	43819177	C	T	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.85	p.D29N	1.000	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	67	0	0	70	12	14.63	-	-	-	T	43819177	C	T	43819177	3	4	240	1	0	0	0	0	1	0	0	0	15935	826	29	2	5920	2	THADA	2	43819177	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31685	43819177	199380196	532	19382										
ABCG8	0	genome.wustl.edu	37	chr2	44073413	44073413	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaacctaagcttcaaagtGagaagtgggcagatgctggc	13	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	44073413	44073413	G	A	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	1	known	silent	c.285	p.V95	0.900	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	40	0	0	57	11	16.18	-	-	-	A	44073413	G	A	44073413	2	1	240	1	0	0	0	0	0	0	0	1	72	1277	45	2		2	ABCG8	2	44073413	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	254236	44073413	199125960	533	19383										
LRPPRC	0	genome.wustl.edu	37	chr2	44152221	44152221	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttactatacagttttagcaGattgtagtacatctggtctc	7	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	44152221	44152221	G	C	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.2881	p.L961V	0.997	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	121	0	0	131	31	19.14	-	-	-	C	44152221	G	C	44152221	3	2	240	1	0	0	0	0	1	0	0	0	9031	933	33	2	1351	2	LRPPRC	2	44152221	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	78808	44152221	199047152	534	19384										
LRPPRC	0	genome.wustl.edu	37	chr2	44170830	44170830	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattcaattaacttacttttCcaagtgtacagtgaccaatg	5	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	44170830	44170830	C	A	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	nonsense	c.2500	p.E834*	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	64	0	0	71	17	19.32	-	-	-	A	44170830	C	A	44170830	4	1	240	1	0	0	0	0	0	1	0	0	9031	864	30	2	1748	2	LRPPRC	2	44170830	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18609	44170830	199028543	535	19385										
SRBD1	0	genome.wustl.edu	37	chr2	45620165	45620165	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactgttgtttgcaatctttCtgcaattttctccattcctt	4	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	45620165	45620165	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.2617	p.E873K	0.843	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	237	0	0	204	50	19.69	-	-	-	T	45620165	C	T	45620165	3	4	240	1	0	0	0	0	1	0	0	0	15224	922	32	2	378	2	SRBD1	2	45620165	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1449335	45620165	197579208	536	19386										
SRBD1	0	genome.wustl.edu	37	chr2	45789820	45789820	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgcaccacctacagaattCatccttcactccatcagaaa	4	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	45789820	45789820	C	G	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.1381	p.E461Q	1.000	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	107	0	0	98	25	20.33	-	-	-	G	45789820	C	G	45789820	3	3	240	1	0	0	0	0	1	0	0	0	15224	835	29	2	1654	2	SRBD1	2	45789820	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	169655	45789820	197409553	537	19387										
SRBD1	0	genome.wustl.edu	37	chr2	45800405	45800405	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtagagcagaaacttatCaacatctttctcatttacct	5	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	45800405	45800405	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.1246	p.D416N	0.439	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	152	0	0	162	37	18.59	-	-	-	T	45800405	C	T	45800405	3	4	240	1	0	0	0	0	1	0	0	0	15224	826	29	2	1793	2	SRBD1	2	45800405	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10585	45800405	197398968	538	19388										
SRBD1	0	genome.wustl.edu	37	chr2	45826704	45826704	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattttctttaaagcggactGaccaaatgtaaagtcatcgt	8	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	45826704	45826704	G	C	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.532	p.Q178E	0.987	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	212	0	0	201	59	22.69	-	-	-	C	45826704	G	C	45826704	3	2	240	1	0	0	0	0	1	0	0	0	15224	1299	45	2	2527	2	SRBD1	2	45826704	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26299	45826704	197372669	539	19389										
MSH2	0	genome.wustl.edu	37	chr2	47707949	47707949	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggagtttcagtatattgGagaatcgcaaggatatgata	12	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	47707949	47707949	G	C	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	missense	c.2573	p.G858A	0.996	pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	103	0	0	92	23	20	-	-	-	C	47707949	G	C	47707949	3	2	240	1	0	0	0	0	1	0	0	0	9942	1174	41	2	2631	2	MSH2	2	47707949	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1881245	47707949	195491424	540	19390										
MSH6	0	genome.wustl.edu	37	chr2	48026509	48026509	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcccattctggctttcctGaaattgcatttggccgttat	10	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	48026509	48026509	G	T	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	nonsense	c.1387	p.E463*	1.000	pfam_DNA_mismatch_repair_MutS-lik_N,superfamily_DNA_mismatch_repair_MutS_N,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	109	0	0	93	24	20.51	-	-	-	T	48026509	G	T	48026509	4	4	240	1	0	0	0	0	0	1	0	0	9946	1291	45	2	1401	2	MSH6	2	48026509	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	318560	48026509	195172864	541	19391										
MSH6	0	genome.wustl.edu	37	chr2	48026911	48026911	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccagtacaagttttatttGaaaaaggaaatctctcaaag	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	48026911	48026911	G	C	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.1789	p.E597Q	1.000	pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	68	0	0	61	9	12.86	-	-	-	C	48026911	G	C	48026911	3	2	240	1	0	0	0	0	1	0	0	0	9946	1291	45	2	1803	2	MSH6	2	48026911	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	402	48026911	195172462	542	19392										
MSH6	0	genome.wustl.edu	37	chr2	48033789	48033789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagtcactacgattatttCggtaactaactaactataat	4	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	48033789	48033789	C	T	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.4000	p.R1334W	1.000	pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	33	0	0	50	14	21.88	-	-	-	T	48033789	C	T	48033789	3	4	240	1	0	0	0	0	1	0	0	0	9946	898	31	1	4034	1	MSH6	2	48033789	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6878	48033789	195165584	543	19393										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48808576	48808576	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgtcccccacacactcttCaggagtcagccaaaatccgg	7	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	48808576	48808576	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	silent	c.804	p.F268	0.999	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	87	0	0	56	28	33.33	-	-	-	T	48808576	C	T	48808576	2	4	240	1	0	0	0	0	0	0	0	1	15408	825	29	2		2	STON1-GTF2A1L	2	48808576	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	774787	48808576	194390797	544	19394										
LHCGR	0	genome.wustl.edu	37	chr2	48915911	48915911	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catctggttcaggagcacatCggggtgtcttgggtaagcag	15	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	48915911	48915911	C	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342P	0.013	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	105	0	0	83	19	18.63	-	-	-	G	48915911	C	G	48915911	3	3	240	1	0	0	0	0	1	0	0	0	8817	884	31	3	1078	3	LHCGR	2	48915911	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	107335	48915911	194283462	545	19395										
NRXN1	0	genome.wustl.edu	37	chr2	50149365	50149365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgagcctggatacggctctCtgccgcctgctcgggttggg	15	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	50149365	50149365	C	G	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.4217	p.R1406T	0.882	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	65	0	0	62	18	22.5	-	-	-	G	50149365	C	G	50149365	3	3	240	1	0	0	0	0	1	0	0	0	10738	913	32	2	286	2	NRXN1	2	50149365	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1233454	50149365	193050008	546	19396										
CCDC88A	0	genome.wustl.edu	37	chr2	55523081	55523081	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctggggtttttccacttaCtgacctggccagaccacagc	9	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55523081	55523081	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.5203	p.V1735L	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	52	0	0	57	11	16.18	-	-	-	G	55523081	C	G	55523081	3	3	240	1	0	0	0	0	1	0	0	0	2890	565	20	4	420	4	CCDC88A	2	55523081	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5373716	55523081	187676292	547	19397										
CCDC88A	0	genome.wustl.edu	37	chr2	55536132	55536132	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagactttatcaattttctCatttttagagtaatccagtt	4	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55536132	55536132	C	T	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.4200	p.M1400I	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	82	0	0	87	33	27.5	-	-	-	T	55536132	C	T	55536132	3	4	240	1	0	0	0	0	1	0	0	0	2890	826	29	2	1447	2	CCDC88A	2	55536132	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13051	55536132	187663241	548	19398										
CCDC88A	0	genome.wustl.edu	37	chr2	55591145	55591145	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctaaaccttgaattctttCaataaattcctcttttttct	1	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55591145	55591145	C	T	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.427	p.E143K	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	109	0	0	82	22	21.15	-	-	-	T	55591145	C	T	55591145	3	4	240	1	0	0	0	0	1	0	0	0	2890	835	29	2	5296	2	CCDC88A	2	55591145	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55013	55591145	187608228	549	19399										
CCDC88A	0	genome.wustl.edu	37	chr2	55615932	55615932	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctggtaataaaattttatCtgtctcaccaaaatggatag	6	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55615932	55615932	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.255	p.Q85H	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	85	0	0	66	12	15.38	-	-	-	G	55615932	C	G	55615932	3	3	240	1	0	0	0	0	1	0	0	0	2890	912	32	2	5480	2	CCDC88A	2	55615932	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24787	55615932	187583441	550	19400										
CCDC104	0	genome.wustl.edu	37	chr2	55764623	55764623	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatggaatcctgaagttatCagaggctaaaacagaagagc	10	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55764623	55764623	C	T	SNP	CCDC104	ENST00000339012	human	ensembl	69_37n	1	known	missense	c.617	p.S206L	0.998	NULL	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001	47	0	0	56	8	12.5	-	-	-	T	55764623	C	T	55764623	3	4	240	1	0	0	0	0	1	0	0	0	2764	838	29	2	568	2	CCDC104	2	55764623	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148691	55764623	187434750	551	19401										
SMEK2	0	genome.wustl.edu	37	chr2	55791461	55791461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaataccttttttagtctCcataaacttttcataattat	1	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55791461	55791461	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	missense	c.1993	p.E665K	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	165	0	0	119	76	38.97	-	-	-	T	55791461	C	T	55791461	3	4	240	1	0	0	0	0	1	0	0	0	14883	864	30	2	313	2	SMEK2	2	55791461	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26838	55791461	187407912	552	19402										
SMEK2	0	genome.wustl.edu	37	chr2	55842596	55842596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactacttgcctgttgtttCtgatatgcagtatttggatt	8	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55842596	55842596	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	silent	c.189	p.Q63	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	133	0	0	122	32	20.78	-	-	-	T	55842596	C	T	55842596	2	4	240	1	0	0	0	0	0	0	0	1	14883	912	32	2		2	SMEK2	2	55842596	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51135	55842596	187356777	553	19403										
PNPT1	0	genome.wustl.edu	37	chr2	55906821	55906821	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttaaaacaacttaccaatCtgacttttaggtgctccagc	5	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	55906821	55906821	C	G	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.675	p.Q225H	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	92	0	0	102	28	21.54	-	-	-	G	55906821	C	G	55906821	3	3	240	1	0	0	0	0	1	0	0	0	12247	912	32	2	1760	2	PNPT1	2	55906821	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64225	55906821	187292552	554	19404										
VRK2	0	genome.wustl.edu	37	chr2	58313488	58313488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtagtcaaaaagtggataGaacgcaaacaacttgattat	8	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	58313488	58313488	G	A	SNP	VRK2	ENST00000340157	human	ensembl	69_37n	1	known	missense	c.271	p.E91K	0.057	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK2	HGNC	ENSG00000028116	86	0	0	92	12	11.54	-	-	-	A	58313488	G	A	58313488	3	1	240	1	0	0	0	0	1	0	0	0	17317	943	33	2	285	2	VRK2	2	58313488	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2406667	58313488	184885885	555	19405										
FANCL	0	genome.wustl.edu	37	chr2	58457010	58457010	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgccaactacataataatCtaaaattttaatgagacaaa	4	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	58457010	58457010	C	G	SNP	FANCL	ENST00000233741	human	ensembl	69_37n	-1	known	splice_site	c.156-1	e3-1	1.000	-	-	-	no_errors	FANCL	HGNC	ENSG00000115392	114	0	0	120	18	13.04	-	-	-	G	58457010	C	G	58457010	5	3	240	1	0	0	0	0	0	0	1	0	5716	927	32	2	1035	2	FANCL	2	58457010	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	143522	58457010	184742363	556	19406										
PEX13	0	genome.wustl.edu	37	chr2	61275807	61275807	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggttgctgattctttggatGaacaggaagctgcctttgaa	12	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61275807	61275807	G	A	SNP	PEX13	ENST00000295030	human	ensembl	69_37n	1	known	missense	c.1114	p.E372K	1.000	NULL	pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PEX13	HGNC	ENSG00000162928	104	0	0	98	15	13.27	-	-	-	A	61275807	G	A	61275807	3	1	240	1	0	0	0	0	1	0	0	0	11815	1291	45	2	1128	2	PEX13	2	61275807	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2818797	61275807	181923566	557	19407										
USP34	0	genome.wustl.edu	37	chr2	61515928	61515928	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagaccaggcaaagacatCatgataagctaaatccaaat	6	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61515928	61515928	C	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.4633	p.D1545N	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	106	0	0	89	20	18.35	-	-	-	T	61515928	C	T	61515928	3	4	240	1	0	0	0	0	1	0	0	0	17162	826	29	2	6195	2	USP34	2	61515928	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	240121	61515928	181683445	558	19408										
USP34	0	genome.wustl.edu	37	chr2	61515958	61515958	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaatccaaatcggatggatCtactgcaaactggcatatta	7	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61515958	61515958	C	G	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.4603	p.D1535H	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	92	0	0	48	33	40.74	-	-	-	G	61515958	C	G	61515958	3	3	240	1	0	0	0	0	1	0	0	0	17162	913	32	2	6225	2	USP34	2	61515958	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30	61515958	181683415	559	19409										
XPO1	0	genome.wustl.edu	37	chr2	61719760	61719760	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgcattgctccactaatgGagcctattgcccaacacaat	6	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61719760	61719760	G	C	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1508	p.S503C	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	76	0	0	65	22	25.29	-	-	-	C	61719760	G	C	61719760	3	2	240	1	0	0	0	0	1	0	0	0	17542	1174	41	2	1755	2	XPO1	2	61719760	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	203802	61719760	181479613	560	19410										
XPO1	0	genome.wustl.edu	37	chr2	61720141	61720141	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttgatcattctctacaacCaatacttcctctggtttagc	4	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61720141	61720141	C	G	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1293	p.L431F	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	153	0	0	94	78	45.35	-	-	-	G	61720141	C	G	61720141	3	3	240	1	0	0	0	0	1	0	0	0	17542	593	21	4	1974	4	XPO1	2	61720141	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	381	61720141	181479232	561	19411										
XPO1	0	genome.wustl.edu	37	chr2	61760993	61760993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgaaatcaagcagctgacGagctgcatggtctgctaaca	11	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	61760993	61760993	G	A	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.40	p.R14C	1.000	NULL	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	123	0	0	96	27	21.95	-	-	-	A	61760993	G	A	61760993	3	1	240	1	0	0	0	0	1	0	0	0	17542	1058	37	1	3271	1	XPO1	2	61760993	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40852	61760993	181438380	562	19412										
COMMD1	0	genome.wustl.edu	37	chr2	62228064	62228064	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagtcaaggcactcagctCaaatacacacacctgttgcc	6	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	62228064	62228064	C	G	SNP	COMMD1	ENST00000311832	human	ensembl	69_37n	1	known	missense	c.409	p.Q137E	0.590	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD1	HGNC	ENSG00000173163	78	0	0	71	18	20	-	-	-	G	62228064	C	G	62228064	3	3	240	1	0	0	0	0	1	0	0	0	3744	827	29	2	415	2	COMMD1	2	62228064	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	467071	62228064	180971309	563	19413										
UGP2	0	genome.wustl.edu	37	chr2	64113526	64113526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagactggtggaaattgctCaagtgccaaaagcacatgta	11	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	64113526	64113526	C	G	SNP	UGP2	ENST00000337130	human	ensembl	69_37n	1	known	missense	c.925	p.Q309E	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764	107	0	0	92	30	24.59	-	-	-	G	64113526	C	G	64113526	3	3	240	1	0	0	0	0	1	0	0	0	17040	827	29	2	951	2	UGP2	2	64113526	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1885462	64113526	179085847	564	19414										
CEP68	0	genome.wustl.edu	37	chr2	65300103	65300103	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggaaaagaatcactggtgCaatgtgtgaaggtaatgaca	13	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	65300103	65300103	C	T	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	nonsense	c.1873	p.Q625*	0.973	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	31	0	0	34	7	17.07	-	-	-	T	65300103	C	T	65300103	4	4	240	1	0	0	0	0	0	1	0	0	3287	711	25	4	1879	4	CEP68	2	65300103	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1186577	65300103	177899270	565	19415										
PNO1	0	genome.wustl.edu	37	chr2	68401923	68401923	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtggctagcagatcagcaGatcgattctgatttcaagtc	10	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	68401923	68401923	G	T	SNP	PNO1	ENST00000263657	human	ensembl	69_37n	1	known	missense	c.748	p.D250Y	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	PNO1	HGNC	ENSG00000115946	163	0	0	116	30	20.55	-	-	-	T	68401923	G	T	68401923	3	4	240	1	0	0	0	0	1	0	0	0	12235	942	33	2	774	2	PNO1	2	68401923	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3101820	68401923	174797450	566	19416										
CNRIP1	0	genome.wustl.edu	37	chr2	68544272	68544272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcaccatactcctatacCcgcaagcaagccttaccggc	7	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	68544272	68544272	C	T	SNP	CNRIP1	ENST00000409862	human	ensembl	69_37n	-1	putative	missense	c.347	p.G116E	0.000	NULL	NULL	-	no_errors	CNRIP1	HGNC	ENSG00000119865	71	0	0	68	12	15	-	-	-	T	68544272	C	T	68544272	3	4	240	1	0	0	0	0	1	0	0	0	3663	638	22	4		4	CNRIP1	2	68544272	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	142349	68544272	174655101	567	19417										
APLF	0	genome.wustl.edu	37	chr2	68772404	68772404	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgtgggccaagatgagactGatgaccggcctgaatgtccc	13	11	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	68772404	68772404	G	T	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	missense	c.1246	p.D416Y	0.979	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	116	0	0	112	18	13.85	-	-	-	T	68772404	G	T	68772404	3	4	240	1	0	0	0	0	1	0	0	0	777	1290	45	2	1276	2	APLF	2	68772404	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	228132	68772404	174426969	568	19418										
NFU1	0	genome.wustl.edu	37	chr2	69623385	69623385	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatccagattattttaaggtGagtttgcttctttttcatct	6	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	69623385	69623385	G	C	SNP	NFU1	ENST00000410022	human	ensembl	69_37n	-1	known	nonsense	c.758	p.S253*	1.000	NULL	pfam_NIF_FeS_clus_asmbl_NifU-like_N,pfam_NIF_FeS_clus_asmbl_NifU_C,superfamily_NIF_FeS_clus_asmbl_NifU-like_N,smart_NIF_FeS_clus_asmbl_NifU-like_N,pirsf_HIRA-interacting_protein_5	-	no_errors	NFU1	HGNC	ENSG00000169599	112	0	0	99	23	18.85	-	-	-	C	69623385	G	C	69623385	4	2	240	1	0	0	0	0	0	1	0	0	10458	1294	45	2	10	2	NFU1	2	69623385	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	850981	69623385	173575988	569	19419										
AAK1	0	genome.wustl.edu	37	chr2	69706155	69706155	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtagtagggttagagagcaGagagcaatcaagcagggaat	15	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	69706155	69706155	G	C	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.2608	p.L870V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	95	0	0	70	12	14.63	-	-	-	C	69706155	G	C	69706155	3	2	240	1	0	0	0	0	1	0	0	0	16	933	33	2	289	2	AAK1	2	69706155	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82770	69706155	173493218	570	19420										
SNRNP27	0	genome.wustl.edu	37	chr2	70123632	70123632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaagaaagaagagatgagGaaaagaaagaaacaaaagaa	11	1	0	8			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	70123632	70123632	G	A	SNP	SNRNP27	ENST00000244227	human	ensembl	69_37n	1	known	missense	c.220	p.E74K	0.924	pfam_DUF1777	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380	89	0	0	106	20	15.87	-	-	-	A	70123632	G	A	70123632	3	1	240	1	0	0	0	0	1	0	0	0	14943	1175	41	2	230	2	SNRNP27	2	70123632	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	417477	70123632	173075741	571	19421										
SNRNP27	0	genome.wustl.edu	37	chr2	70124532	70124532	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagacttagagggcaaaacaGaggaagaaatagaaatgatg	12	3	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	70124532	70124532	G	A	SNP	SNRNP27	ENST00000244227	human	ensembl	69_37n	1	known	missense	c.292	p.E98K	1.000	pfam_DUF1777	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380	72	0	0	89	10	10.1	-	-	-	A	70124532	G	A	70124532	3	1	240	1	0	0	0	0	1	0	0	0	14943	943	33	2	306	2	SNRNP27	2	70124532	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	900	70124532	173074841	572	19422										
C2orf42	0	genome.wustl.edu	37	chr2	70406733	70406733	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaagcagatactgttgattCtgaatggcaacctaactggg	10	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	70406733	70406733	C	G	SNP	C2orf42	ENST00000264434	human	ensembl	69_37n	-1	known	missense	c.865	p.E289Q	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998	104	0	0	96	25	20.49	-	-	-	G	70406733	C	G	70406733	3	3	240	1	0	0	0	0	1	0	0	0	2186	922	32	2	887	2	C2orf42	2	70406733	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	282201	70406733	172792640	573	19423										
SNRPG	0	genome.wustl.edu	37	chr2	70520779	70520779	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgggagggtgagctttgctCatggtgtatactccgcgggc	16	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	70520779	70520779	C	T	SNP	SNRPG	ENST00000272348	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPG	HGNC	ENSG00000143977	90	0	0	98	53	35.1	-	-	-	T	70520779	C	T	70520779	3	4	240	1	0	0	0	0	1	0	0	0	14958	826	29	2	243	2	SNRPG	2	70520779	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	114046	70520779	172678594	574	19424										
ADD2	0	genome.wustl.edu	37	chr2	70919586	70919586	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcagcgcacgtcgggcctCgctgcatagatggccgagtg	15	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	70919586	70919586	C	T	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	silent	c.654	p.A218	0.998	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	50	0	0	50	16	24.24	-	-	-	T	70919586	C	T	70919586	2	4	240	1	0	0	0	0	0	0	0	1	305	871	31	1		1	ADD2	2	70919586	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	398807	70919586	172279787	575	19425										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71170756	71170756	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagcagggtgtttggggtGagacccctactcacccccgc	14	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71170756	71170756	G	A	SNP	ATP6V1B1	ENST00000454446	human	ensembl	69_37n	1	novel	silent	c.138	p.V46	0.945	NULL	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_ATPase_F1/A1-cplx_a/bsu_N	-	no_stop_codon:bad_bp_length_for_coding_region	ATP6V1B1	HGNC	ENSG00000116039	26	0	0	14	9	39.13	-	-	-	A	71170756	G	A	71170756	2	1	240	1	0	0	0	0	0	0	0	1	1182	1305	45	2		2	ATP6V1B1	2	71170756	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	251170	71170756	172028617	576	19426										
NAGK	0	genome.wustl.edu	37	chr2	71305509	71305509	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaacttcttctccagcttCaccctgatgaagctgaggca	8	13	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71305509	71305509	C	T	SNP	NAGK	ENST00000443938	human	ensembl	69_37n	1	novel	missense	c.959	p.S320L	1.000	NULL	pfam_ATPase_BadF	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAGK	HGNC	ENSG00000124357	92	0	0	91	23	20.18	-	-	-	T	71305509	C	T	71305509	3	4	240	1	0	0	0	0	1	0	0	0	10214	825	29	2	1082	2	NAGK	2	71305509	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	134753	71305509	171893864	577	19427										
ZNF638	0	genome.wustl.edu	37	chr2	71651097	71651097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctaaactggattacagaGatataacaaaacaatctcag	5	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71651097	71651097	G	C	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.4453	p.D1485H	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	62	0	0	47	15	24.19	-	-	-	C	71651097	G	C	71651097	3	2	240	1	0	0	0	0	1	0	0	0	18151	942	33	2	4535	2	ZNF638	2	71651097	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	345588	71651097	171548276	578	19428										
ZNF638	0	genome.wustl.edu	37	chr2	71654346	71654346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgttgatgaagttggagagGaggaagatggagataatgat	16	1	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71654346	71654346	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.5347	p.E1783K	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	73	0	0	90	13	12.62	-	-	-	A	71654346	G	A	71654346	3	1	240	1	0	0	0	0	1	0	0	0	18151	1175	41	2	5437	2	ZNF638	2	71654346	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3249	71654346	171545027	579	19429										
DYSF	0	genome.wustl.edu	37	chr2	71747332	71747332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgtgggcaccatttacagaGagccccgtgagttctcacca	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71747332	71747332	G	C	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.1024	p.E342Q	1.000	pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	110	0	0	133	25	15.82	-	-	-	C	71747332	G	C	71747332	3	2	240	1	0	0	0	0	1	0	0	0	4894	943	33	2	1161	2	DYSF	2	71747332	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	92986	71747332	171452041	580	19430										
DYSF	0	genome.wustl.edu	37	chr2	71909714	71909714	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatacaagaccatgaagttCatcctgtggcggcgtttccg	10	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	71909714	71909714	C	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.6204	p.F2068	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	193	0	0	133	72	35.12	-	-	-	T	71909714	C	T	71909714	2	4	240	1	0	0	0	0	0	0	0	1	4894	825	29	2		2	DYSF	2	71909714	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162382	71909714	171289659	581	19431										
ALMS1	0	genome.wustl.edu	37	chr2	73679608	73679608	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggataccaataggactgtCtagttcctactcacattcac	7	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	73679608	73679608	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.5951	p.S1984F	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	42	0	0	36	6	14.29	-	-	-	T	73679608	C	T	73679608	3	4	240	1	0	0	0	0	1	0	0	0	535	913	32	2	5981	2	ALMS1	2	73679608	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1769894	73679608	169519765	582	19432										
ALMS1	0	genome.wustl.edu	37	chr2	73747067	73747067	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attatagagcctggtaaccaGaagctacgcaaagctcctgt	9	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	73747067	73747067	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	silent	c.9702	p.Q3234	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	128	0	0	104	29	21.8	-	-	-	A	73747067	G	A	73747067	2	1	240	1	0	0	0	0	0	0	0	1	535	933	33	2		2	ALMS1	2	73747067	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67459	73747067	169452306	583	19433										
ACTG2	0	genome.wustl.edu	37	chr2	74141838	74141838	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgtgcgagacatcaaggaGaagctgtgctatgtggccct	13	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74141838	74141838	G	C	SNP	ACTG2	ENST00000345517	human	ensembl	69_37n	1	known	missense	c.645	p.E215D	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG2	HGNC	ENSG00000163017	71	0	0	82	28	25.45	-	-	-	C	74141838	G	C	74141838	3	2	240	1	0	0	0	0	1	0	0	0	197	933	33	2	667	2	ACTG2	2	74141838	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	394771	74141838	169057535	584	19434										
TET3	0	genome.wustl.edu	37	chr2	74273708	74273708	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttagcacccggctctatGaaaccttcaaccgtgagatg	8	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74273708	74273708	G	C	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	missense	c.259	p.E87Q	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	43	0	0	50	11	18.03	-	-	-	C	74273708	G	C	74273708	3	2	240	1	0	0	0	0	1	0	0	0	15866	1291	45	2	261	2	TET3	2	74273708	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	131870	74273708	168925665	585	19435										
RTKN	0	genome.wustl.edu	37	chr2	74655445	74655445	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccccagtgtctgcatcctCaggttgccggtaacagaaga	10	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74655445	74655445	C	T	SNP	RTKN	ENST00000272430	human	ensembl	69_37n	-1	known	missense	c.1036	p.E346K	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	112	0	0	102	27	20.93	-	-	-	T	74655445	C	T	74655445	3	4	240	1	0	0	0	0	1	0	0	0	13808	835	29	2	671	2	RTKN	2	74655445	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	381737	74655445	168543928	586	19436										
CCDC142	0	genome.wustl.edu	37	chr2	74708188	74708188	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtggtctgaagggtacaGagacctagggcgacaggcgc	17	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74708188	74708188	G	C	SNP	CCDC142	ENST00000454193	human	ensembl	69_37n	-1	known	missense	c.989	p.S330C	0.995	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC142	HGNC	ENSG00000135637	23	0	0	32	10	23.81	-	-	-	C	74708188	G	C	74708188	3	2	240	1	0	0	0	0	1	0	0	0	2801	929	33	2	992	2	CCDC142	2	74708188	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	52743	74708188	168491185	587	19437										
PCGF1	0	genome.wustl.edu	37	chr2	74733153	74733153	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagagtggtcaaagctgctGaaggggaggccgaggttgct	17	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74733153	74733153	G	A	SNP	PCGF1	ENST00000233630	human	ensembl	69_37n	-1	known	silent	c.456	p.F152	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF1	HGNC	ENSG00000115289	78	0	0	100	21	17.36	-	-	-	A	74733153	G	A	74733153	2	1	240	1	0	0	0	0	0	0	0	1	11647	1281	45	2		2	PCGF1	2	74733153	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24965	74733153	168466220	588	19438										
TLX2	0	genome.wustl.edu	37	chr2	74742778	74742778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgcgctctcgcccttctCtgggacgcgccgcataggcc	12	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74742778	74742778	C	T	SNP	TLX2	ENST00000233638	human	ensembl	69_37n	1	known	missense	c.419	p.S140F	0.998	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	TLX2	HGNC	ENSG00000115297	25	0	0	35	8	18.6	-	-	-	T	74742778	C	T	74742778	3	4	240	1	0	0	0	0	1	0	0	0	16056	913	32	2	425	2	TLX2	2	74742778	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9625	74742778	168456595	589	19439										
DOK1	0	genome.wustl.edu	37	chr2	74781924	74781924	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccgctttttttgcagagtCagcgctttgggaccaaggta	13	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	74781924	74781924	C	T	SNP	DOK1	ENST00000233668	human	ensembl	69_37n	1	known	nonsense	c.43	p.Q15*	1.000	smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325	71	0	0	66	13	16.46	-	-	-	T	74781924	C	T	74781924	4	4	240	1	0	0	0	0	0	1	0	0	4731	827	29	2	45	2	DOK1	2	74781924	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39146	74781924	168417449	590	19440										
TACR1	0	genome.wustl.edu	37	chr2	75347754	75347754	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcgatcatgcacacgactCtgctgggcatggtctctgtg	11	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	75347754	75347754	C	G	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	missense	c.530	p.R177T	0.993	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_NK3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	25	0	0	37	21	36.21	-	-	-	G	75347754	C	G	75347754	3	3	240	1	0	0	0	0	1	0	0	0	15597	913	32	2	713	2	TACR1	2	75347754	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	565830	75347754	167851619	591	19441										
LRRTM1	0	genome.wustl.edu	37	chr2	80529760	80529760	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgcccctccccgccgtcCgcgagcgtggtggccgagct	14	18	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	80529760	80529760	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	silent	c.1185	p.A395	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	17	0	0	4	4	50	-	-	-	T	80529760	C	T	80529760	2	4	240	1	0	0	0	0	0	0	0	1	9105	639	23	1		1	LRRTM1	2	80529760	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5182006	80529760	162669613	592	19442										
MAT2A	0	genome.wustl.edu	37	chr2	85768229	85768229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatttgtgaccaaatcagtGatgctgtccttgatgcccac	9	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	85768229	85768229	G	C	SNP	MAT2A	ENST00000306434	human	ensembl	69_37n	1	known	missense	c.115	p.D39H	1.000	pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906	107	1	0.93	69	47	40.52	-	-	-	C	85768229	G	C	85768229	3	2	240	1	0	0	0	0	1	0	0	0	9401	1290	45	2	121	2	MAT2A	2	85768229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5238469	85768229	157431144	593	19443										
USP39	0	genome.wustl.edu	37	chr2	85857906	85857906	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagacaattataagaacatCaaacgtcctccaggggatat	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	85857906	85857906	C	G	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.786	p.I262M	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	101	0	0	94	24	20.34	-	-	-	G	85857906	C	G	85857906	3	3	240	1	0	0	0	0	1	0	0	0	17167	816	29	2	808	2	USP39	2	85857906	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89677	85857906	157341467	594	19444										
SFTPB	0	genome.wustl.edu	37	chr2	85892442	85892442	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcttggatccgcttgatCagagccctgcagagccagca	12	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	85892442	85892442	C	G	SNP	SFTPB	ENST00000428225	human	ensembl	69_37n	-1	novel	missense	c.631	p.D211H	0.005	superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SFTPB	HGNC	ENSG00000168878	38	0	0	47	14	22.95	-	-	-	G	85892442	C	G	85892442	3	3	240	1	0	0	0	0	1	0	0	0	14279	813	29	2	523	2	SFTPB	2	85892442	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34536	85892442	157306931	595	19445										
CD8A	0	genome.wustl.edu	37	chr2	87017578	87017578	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgaaggtgtcccccaacctCttgcccgagaaccgctgggt	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	87017578	87017578	C	G	SNP	CD8A	ENST00000538832	human	ensembl	69_37n	-1	known	missense	c.399	p.K133N	0.001	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8A	HGNC	ENSG00000153563	21	0	0	16	6	27.27	-	-	-	G	87017578	C	G	87017578	3	3	240	1	0	0	0	0	1	0	0	0	3073	912	32	2	451	2	CD8A	2	87017578	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1125136	87017578	156181795	596	19446										
SMYD1	0	genome.wustl.edu	37	chr2	88367479	88367479	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagttctgggctgcagatatCatctttgctgagcgggctta	13	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	88367479	88367479	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	silent	c.96	p.I32	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	161	0	0	158	49	23.67	-	-	-	T	88367479	C	T	88367479	2	4	240	1	0	0	0	0	0	0	0	1	14910	816	29	2		2	SMYD1	2	88367479	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1349901	88367479	154831894	597	19447										
PROM2	0	genome.wustl.edu	37	chr2	95942342	95942342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggccttgtgtttgcctagGagctgcaggccgtggcacag	16	10	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	95942342	95942342	G	A	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	missense	c.619	p.E207K	1.000	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	61	0	0	58	22	27.5	-	-	-	A	95942342	G	A	95942342	3	1	240	1	0	0	0	0	1	0	0	0	12637	1188	41	2	637	2	PROM2	2	95942342	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7574863	95942342	147257031	598	19448										
TRIM43	0	genome.wustl.edu	37	chr2	96260029	96260029	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagtctctggcaattcctGagctctgagaaacaaatatg	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	96260029	96260029	G	C	SNP	TRIM43	ENST00000272395	human	ensembl	69_37n	1	known	silent	c.258	p.L86	0.001	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM43	HGNC	ENSG00000144015	53	0	0	80	11	12.09	-	-	-	C	96260029	G	C	96260029	2	2	240	1	0	0	0	0	0	0	0	1	16614	1277	45	2		2	TRIM43	2	96260029	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	317687	96260029	146939344	599	19449										
CIAO1	0	genome.wustl.edu	37	chr2	96934216	96934216	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttagcttctgccagctatGatgacacagtgaagctgtac	9	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	96934216	96934216	G	C	SNP	CIAO1	ENST00000488633	human	ensembl	69_37n	1	known	missense	c.511	p.D171H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	115	0	0	70	52	42.62	-	-	-	C	96934216	G	C	96934216	3	2	240	1	0	0	0	0	1	0	0	0	3447	1290	45	2	529	2	CIAO1	2	96934216	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	674187	96934216	146265157	600	19450										
SNRNP200	0	genome.wustl.edu	37	chr2	96961280	96961280	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctcaccacccttgcgggtGatgatgtcccacttctcggg	11	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	96961280	96961280	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.1788	p.I596	0.983	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	52	0	0	59	13	18.06	-	-	-	A	96961280	G	A	96961280	2	1	240	1	0	0	0	0	0	0	0	1	14941	1280	45	2		2	SNRNP200	2	96961280	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27064	96961280	146238093	601	19451										
ITPRIPL1	0	genome.wustl.edu	37	chr2	96992960	96992960	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagttttgtggatgatctCattgaggcctgtcgggtgct	15	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	96992960	96992960	C	A	SNP	ITPRIPL1	ENST00000420728	human	ensembl	69_37n	1	putative	nonsense	c.686	p.S229*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITPRIPL1	HGNC	ENSG00000198885	27	0	0	27	8	22.86	-	-	-	A	96992960	C	A	96992960	4	1	240	1	0	0	0	0	0	1	0	0	7978	813	29	2	631	2	ITPRIPL1	2	96992960	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31680	96992960	146206413	602	19452										
LMAN2L	0	genome.wustl.edu	37	chr2	97378855	97378855	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgagtacctggactcctgGagaatatcgcctcttctggg	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	97378855	97378855	G	C	SNP	LMAN2L	ENST00000377079	human	ensembl	69_37n	-1	known	missense	c.529	p.P177A	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN2L	HGNC	ENSG00000114988	49	0	0	69	20	22.47	-	-	-	C	97378855	G	C	97378855	3	2	240	1	0	0	0	0	1	0	0	0	8895	1174	41	2	570	2	LMAN2L	2	97378855	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	385895	97378855	145820518	603	19453										
ANKRD36B	0	genome.wustl.edu	37	chr2	98196932	98196932	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaaggtctgtacctgccaaGataatcaatggcatttacat	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	98196932	98196932	G	A	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	194	0	0	188	42	18.26	-	-	-	A	98196932	G	A	98196932	1	1	240	0	1	0	0	0	0	0	0	0	665	942	33	2		2	ANKRD36B	2	98196932	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	818077	98196932	145002441	604	19454										
TMEM131	0	genome.wustl.edu	37	chr2	98421887	98421887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaatgatccccacactgtaGtccaggatcaaaataaatgt	7	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	98421887	98421887	G	C	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.2236	p.L746V	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	61	0	0	54	12	18.18	-	-	-	C	98421887	G	C	98421887	3	2	240	1	0	0	0	0	1	0	0	0	16139	1020	36	4	3499	4	TMEM131	2	98421887	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	224955	98421887	144777486	605	19455										
UNC50	0	genome.wustl.edu	37	chr2	99226339	99226339	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatatctgagaaggcttttCcgctttcggcaaatggactt	9	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	99226339	99226339	C	T	SNP	UNC50	ENST00000409347	human	ensembl	69_37n	1	known	silent	c.168	p.F56	0.506	pfam_UNC-50	pfam_UNC-50	-	no_errors	UNC50	HGNC	ENSG00000115446	61	0	0	59	21	26.25	-	-	-	T	99226339	C	T	99226339	2	4	240	1	0	0	0	0	0	0	0	1	17087	854	30	2		2	UNC50	2	99226339	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	804452	99226339	143973034	606	19456										
MGAT4A	0	genome.wustl.edu	37	chr2	99242246	99242246	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaagtcgaaaggctgaaatGggattgagacttggatccac	13	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	99242246	99242246	G	A	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	silent	c.1521	p.P507	0.992	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	82	0	0	82	18	18	-	-	-	A	99242246	G	A	99242246	2	1	240	1	0	0	0	0	0	0	0	1	9616	1335	47	4		4	MGAT4A	2	99242246	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15907	99242246	143957127	607	19457										
TSGA10	0	genome.wustl.edu	37	chr2	99634755	99634755	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggcttcattgtagaactCatatgataagcattacttga	7	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	99634755	99634755	C	G	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.1980	p.M660I	0.953	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	147	0	0	113	22	16.3	-	-	-	G	99634755	C	G	99634755	3	3	240	1	0	0	0	0	1	0	0	0	16713	826	29	2	124	2	TSGA10	2	99634755	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	392509	99634755	143564618	608	19458										
TSGA10	0	genome.wustl.edu	37	chr2	99721839	99721839	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacattatgaactgtacactCcagctcctctatcctttgtt	4	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	99721839	99721839	C	G	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	52	0	0	52	17	24.64	-	-	-	G	99721839	C	G	99721839	3	3	240	1	0	0	0	0	1	0	0	0	16713	864	30	2	1706	2	TSGA10	2	99721839	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	87084	99721839	143477534	609	19459										
EIF5B	0	genome.wustl.edu	37	chr2	100015796	100015796	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcagtccattgatgcactCaaagactggttcagagatga	11	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	100015796	100015796	C	G	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	silent	c.3582	p.L1194	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	142	0	0	151	32	17.49	-	-	-	G	100015796	C	G	100015796	2	3	240	1	0	0	0	0	0	0	0	1	5081	813	29	2		2	EIF5B	2	100015796	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	293957	100015796	143183577	610	19460										
PDCL3	0	genome.wustl.edu	37	chr2	101188200	101188200	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttgtttacctggaaggaGatatcaaggctcagtttatt	9	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	101188200	101188200	G	C	SNP	PDCL3	ENST00000264254	human	ensembl	69_37n	1	known	missense	c.517	p.D173H	0.999	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	-	no_errors	PDCL3	HGNC	ENSG00000115539	97	0	0	97	21	17.8	-	-	-	C	101188200	G	C	101188200	3	2	240	1	0	0	0	0	1	0	0	0	11701	942	33	2	535	2	PDCL3	2	101188200	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1172404	101188200	142011173	611	19461										
TBC1D8	0	genome.wustl.edu	37	chr2	101655055	101655055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaaggccaccttgcttctGatactgacaatgatgggatg	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	101655055	101655055	G	C	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	missense	c.1143	p.I381M	0.992	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	57	0	0	69	15	17.86	-	-	-	C	101655055	G	C	101655055	3	2	240	1	0	0	0	0	1	0	0	0	15720	1280	45	2	2380	2	TBC1D8	2	101655055	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	466855	101655055	141544318	612	19462										
C2orf29	0	genome.wustl.edu	37	chr2	101881387	101881387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcttggctaaaccccacgGagcctgaccacgcgatccag	10	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	101881387	101881387	G	A	SNP	C2orf29	ENST00000289382	human	ensembl	69_37n	1	known	missense	c.913	p.E305K	1.000	NULL	pfam_DUF2363	-	no_errors	C2orf29	HGNC	ENSG00000158435	117	0	0	148	43	22.51	-	-	-	A	101881387	G	A	101881387	3	1	240	1	0	0	0	0	1	0	0	0	2181	1175	41	2	927	2	C2orf29	2	101881387	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	226332	101881387	141317986	613	19463										
RNF149	0	genome.wustl.edu	37	chr2	101911596	101911596	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcaccagctccaaaatttCtcttccttttggatagctaa	5	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	101911596	101911596	C	G	SNP	RNF149	ENST00000295317	human	ensembl	69_37n	-1	known	missense	c.508	p.E170Q	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162	97	0	0	95	21	18.1	-	-	-	G	101911596	C	G	101911596	3	3	240	1	0	0	0	0	1	0	0	0	13536	922	32	2	718	2	RNF149	2	101911596	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30209	101911596	141287777	614	19464										
MAP4K4	0	genome.wustl.edu	37	chr2	102505374	102505374	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagggctcaaagactaaaaTtcttgtgtgaacgcaatgac	9	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	102505374	102505374	T	C	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.3856	p.F1286L	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	111	0	0	75	22	22.68	-	-	-	C	102505374	T	C	102505374	3	2	240	1	0	0	0	0	1	0	0	0	9333	1493	52	5	4002	5	MAP4K4	2	102505374	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	593778	102505374	140693999	615	19465										
C2orf49	0	genome.wustl.edu	37	chr2	105956116	105956116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatgtccaacatgcaatacCattgcctcagagggatttgc	8	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	105956116	105956116	C	G	SNP	C2orf49	ENST00000258457	human	ensembl	69_37n	1	known	missense	c.176	p.P59R	0.995	NULL	NULL	-	no_errors	C2orf49	HGNC	ENSG00000135974	64	0	0	63	11	14.86	-	-	-	G	105956116	C	G	105956116	3	3	240	1	0	0	0	0	1	0	0	0	2191	594	21	4	182	4	C2orf49	2	105956116	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3450742	105956116	137243257	616	19466										
FHL2	0	genome.wustl.edu	37	chr2	105990173	105990173	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggcttcatgccagtgccgGtccttgtaagacaagtcctg	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	105990173	105990173	G	C	SNP	FHL2	ENST00000322142	human	ensembl	69_37n	-1	known	missense	c.174	p.D58E	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL2	HGNC	ENSG00000115641	78	0	0	94	27	22.31	-	-	-	C	105990173	G	C	105990173	3	2	240	1	0	0	0	0	1	0	0	0	5925	1252	44	4	681	4	FHL2	2	105990173	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	34057	105990173	137209200	617	19467										
RGPD3	0	genome.wustl.edu	37	chr2	107041450	107041450	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgaaaatcccttgaaattGaggtcttttttgccaaactg	7	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	107041450	107041450	G	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.2973	p.L991	0.999	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	154	0	0	193	35	15.35	-	-	-	T	107041450	G	T	107041450	2	4	240	1	0	0	0	0	0	0	0	1	13370	1277	45	2		2	RGPD3	2	107041450	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1051277	107041450	136157923	618	19468										
RGPD4	0	genome.wustl.edu	37	chr2	108487503	108487503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcggtaaaatggccaataaaGcaaacacttccggtgacttt	9	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	108487503	108487503	G	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.3043	p.A1015S	0.419	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	48	0	0	60	13	17.81	-	-	-	T	108487503	G	T	108487503	3	4	240	1	0	0	0	0	1	0	0	0	13371	971	34	4	3121	4	RGPD4	2	108487503	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1446053	108487503	134711870	619	19469										
RGPD4	0	genome.wustl.edu	37	chr2	108488586	108488586	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagatgttggtcaatggaaaGaaaggggcattggtgatata	14	2	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	108488586	108488586	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.4126	p.E1376Q	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	134	0	0	99	31	23.85	-	-	-	C	108488586	G	C	108488586	3	2	240	1	0	0	0	0	1	0	0	0	13371	943	33	2	4204	2	RGPD4	2	108488586	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1083	108488586	134710787	620	19470										
GCC2	0	genome.wustl.edu	37	chr2	109087897	109087897	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttcagaaaaaaaacagttGagtagggatttggaggtttt	12	2	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	109087897	109087897	G	C	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.2112	p.L704F	0.632	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	60	0	0	65	15	18.75	-	-	-	C	109087897	G	C	109087897	3	2	240	1	0	0	0	0	1	0	0	0	6336	1281	45	2	2134	2	GCC2	2	109087897	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	599311	109087897	134111476	621	19471										
RANBP2	0	genome.wustl.edu	37	chr2	109368406	109368406	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaggaaaaacatggccttCaacctgctctgcttgtacat	7	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	109368406	109368406	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	nonsense	c.1711	p.Q571*	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	259	0	0	200	37	15.61	-	-	-	T	109368406	C	T	109368406	4	4	240	1	0	0	0	0	0	1	0	0	13111	827	29	2	1757	2	RANBP2	2	109368406	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	280509	109368406	133830967	622	19472										
RANBP2	0	genome.wustl.edu	37	chr2	109380363	109380363	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgagtcagcaaaagaattCtggttttcggcgaagtgatg	13	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	109380363	109380363	C	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.3368	p.S1123C	0.053	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	16	0	0	14	7	33.33	-	-	-	G	109380363	C	G	109380363	3	3	240	1	0	0	0	0	1	0	0	0	13111	913	32	2	3446	2	RANBP2	2	109380363	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11957	109380363	133819010	623	19473										
RANBP2	0	genome.wustl.edu	37	chr2	109384012	109384012	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttagtcacagggcaaaactCtacagatatgataaagatgt	8	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	109384012	109384012	C	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	silent	c.7017	p.L2339	0.980	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	151	0	0	123	21	14.58	-	-	-	G	109384012	C	G	109384012	2	3	240	1	0	0	0	0	0	0	0	1	13111	900	32	2		2	RANBP2	2	109384012	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3649	109384012	133815361	624	19474										
SEPT10	0	genome.wustl.edu	37	chr2	110303650	110303650	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacggtccttgtccttcctCaggttgctgcctgttgccag	10	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	110303650	110303650	C	T	SNP	SEPT10	ENST00000397712	human	ensembl	69_37n	-1	known	silent	c.1326	p.L442	0.755	NULL	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT10	HGNC	ENSG00000186522	168	0	0	151	35	18.82	-	-	-	T	110303650	C	T	110303650	2	4	240	1	0	0	0	0	0	0	0	1	14148	813	29	2		2	SEPT10	2	110303650	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	919638	110303650	132895723	625	19475										
BCL2L11	0	genome.wustl.edu	37	chr2	111921718	111921718	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgttgtttcaggtatttttGaataattaccaagcagccga	8	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	111921718	111921718	G	A	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	silent	c.507	p.L169	0.704	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	70	0	0	73	12	14.12	-	-	-	A	111921718	G	A	111921718	2	1	240	1	0	0	0	0	0	0	0	1	1373	1281	45	2		2	BCL2L11	2	111921718	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1618068	111921718	131277655	626	19476										
ANAPC1	0	genome.wustl.edu	37	chr2	112625630	112625630	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaacaagtggagttatttCatctagtgggtgcagcatgc	11	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	112625630	112625630	C	T	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.655	p.E219K	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	88	0	0	94	19	16.81	-	-	-	T	112625630	C	T	112625630	3	4	240	1	0	0	0	0	1	0	0	0	598	835	29	2	5347	2	ANAPC1	2	112625630	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	703912	112625630	130573743	627	19477										
ANAPC1	0	genome.wustl.edu	37	chr2	112631202	112631202	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacttactgtaggccttttCagacttatcctgtgatataa	6	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	112631202	112631202	C	G	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.415	p.E139Q	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	57	0	0	51	15	22.73	-	-	-	G	112631202	C	G	112631202	3	3	240	1	0	0	0	0	1	0	0	0	598	835	29	2	5599	2	ANAPC1	2	112631202	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5572	112631202	130568171	628	19478										
MERTK	0	genome.wustl.edu	37	chr2	112779916	112779916	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagaaccatgagatgtatGactatcttctccatggccac	7	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	112779916	112779916	G	C	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	missense	c.2431	p.D811H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	83	0	0	81	21	20.59	-	-	-	C	112779916	G	C	112779916	3	2	240	1	0	0	0	0	1	0	0	0	9550	1290	45	2	2501	2	MERTK	2	112779916	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	148714	112779916	130419457	629	19479										
ZC3H6	0	genome.wustl.edu	37	chr2	113067621	113067621	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggtcaggaaacagaggaaGattttgccaatcagctgaaa	11	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	113067621	113067621	G	C	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.496	p.D166H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	85	0	0	71	13	15.29	-	-	-	C	113067621	G	C	113067621	3	2	240	1	0	0	0	0	1	0	0	0	17667	942	33	2	510	2	ZC3H6	2	113067621	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	287705	113067621	130131752	630	19480										
POLR1B	0	genome.wustl.edu	37	chr2	113317069	113317069	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacggggagccctgtggcctGatgaaccacctaactgccgt	13	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	113317069	113317069	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	silent	c.1644	p.L548	0.999	pfam_RNA_pol_Rpb2_3	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	79	0	0	72	16	17.98	-	-	-	A	113317069	G	A	113317069	2	1	240	1	0	0	0	0	0	0	0	1	12284	1277	45	2		2	POLR1B	2	113317069	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	249448	113317069	129882304	631	19481										
FOXD4L1	0	genome.wustl.edu	37	chr2	114257232	114257232	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcctcacgctcagcggcatCtgcgccttcattagtggccg	11	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	114257232	114257232	C	T	SNP	FOXD4L1	ENST00000306507	human	ensembl	69_37n	1	known	silent	c.399	p.I133	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492	78	0	0	35	20	36.36	-	-	-	T	114257232	C	T	114257232	2	4	240	1	0	0	0	0	0	0	0	1	6046	903	32	2		2	FOXD4L1	2	114257232	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	940163	114257232	128942141	632	19482										
ACTR3	0	genome.wustl.edu	37	chr2	114691862	114691862	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctttgtgctcaaggctgttCttgccttagctgcatcttgg	10	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	114691862	114691862	C	G	SNP	ACTR3	ENST00000263238	human	ensembl	69_37n	1	known	missense	c.439	p.L147V	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR3	HGNC	ENSG00000115091	55	0	0	63	9	12.16	-	-	-	G	114691862	C	G	114691862	3	3	240	1	0	0	0	0	1	0	0	0	212	913	32	2	461	2	ACTR3	2	114691862	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	434630	114691862	128507511	633	19483										
DPP10	0	genome.wustl.edu	37	chr2	116503733	116503733	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaactcacactttggagctCatgccacctgacagctttaa	6	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	116503733	116503733	C	T	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	silent	c.936	p.L312	0.876	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	84	0	0	85	22	20.56	-	-	-	T	116503733	C	T	116503733	2	4	240	1	0	0	0	0	0	0	0	1	4762	813	29	2		2	DPP10	2	116503733	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1811871	116503733	126695640	634	19484										
PTPN4	0	genome.wustl.edu	37	chr2	120677737	120677737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgtagaacatcacacattCttccgtttggacagaccact	7	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	120677737	120677737	C	G	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.921	p.F307L	1.000	pfam_FERM_PH-like_C,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	89	0	0	90	29	24.37	-	-	-	G	120677737	C	G	120677737	3	3	240	1	0	0	0	0	1	0	0	0	12873	912	32	2	963	2	PTPN4	2	120677737	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4174004	120677737	122521636	635	19485										
GLI2	0	genome.wustl.edu	37	chr2	121748027	121748027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggccccccagattgacttcGatgccatcatggatgatggc	11	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	121748027	121748027	G	A	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.4537	p.D1513N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	38	0	0	51	13	20.31	-	-	-	A	121748027	G	A	121748027	3	1	240	1	0	0	0	0	1	0	0	0	6490	1058	37	1	4587	1	GLI2	2	121748027	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1070290	121748027	121451346	636	19486										
TFCP2L1	0	genome.wustl.edu	37	chr2	122004538	122004538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggtgaattctgtgctgatGcagtgtacctgggaggagaa	17	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	122004538	122004538	G	A	SNP	TFCP2L1	ENST00000263707	human	ensembl	69_37n	-1	known	silent	c.513	p.C171	0.895	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112	59	0	0	39	32	45.07	-	-	-	A	122004538	G	A	122004538	2	1	240	1	0	0	0	0	0	0	0	1	15891	1311	46	4		4	TFCP2L1	2	122004538	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	256511	122004538	121194835	637	19487										
CLASP1	0	genome.wustl.edu	37	chr2	122260751	122260751	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttctactcaccatttgcaGattgtatcatgtttccagat	5	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	122260751	122260751	G	C	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	missense	c.704	p.S235C	0.999	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	155	0	0	125	29	18.83	-	-	-	C	122260751	G	C	122260751	3	2	240	1	0	0	0	0	1	0	0	0	3484	942	33	2	4096	2	CLASP1	2	122260751	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	256213	122260751	120938622	638	19488										
CNTNAP5	0	genome.wustl.edu	37	chr2	125320851	125320851	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccagtcctggactaccttCtattgtaactgcagtgacac	7	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	125320851	125320851	C	G	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.1704	p.F568L	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	161	0	0	125	21	14.38	-	-	-	G	125320851	C	G	125320851	3	3	240	1	0	0	0	0	1	0	0	0	3680	912	32	2	1746	2	CNTNAP5	2	125320851	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3060100	125320851	117878522	639	19489										
CNTNAP5	0	genome.wustl.edu	37	chr2	125405445	125405445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggactacgggggcagcatgGaacagctggaggccgtgatc	17	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	125405445	125405445	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.1984	p.E662K	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	34	0	0	23	16	41.03	-	-	-	A	125405445	G	A	125405445	3	1	240	1	0	0	0	0	1	0	0	0	3680	1175	41	2	2034	2	CNTNAP5	2	125405445	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	84594	125405445	117793928	640	19490										
CNTNAP5	0	genome.wustl.edu	37	chr2	125555851	125555851	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagtcttttgctctttatCaattcttcttctcaggactt	4	12	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	125555851	125555851	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	silent	c.3168	p.I1056	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	164	0	0	152	26	14.61	-	-	-	T	125555851	C	T	125555851	2	4	240	1	0	0	0	0	0	0	0	1	3680	816	29	2		2	CNTNAP5	2	125555851	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	150406	125555851	117643522	641	19491										
BIN1	0	genome.wustl.edu	37	chr2	127816681	127816681	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcgggggtggcggcagggGagccatctggaggcgaaggg	22	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	127816681	127816681	G	C	SNP	BIN1	ENST00000316724	human	ensembl	69_37n	-1	known	missense	c.908	p.S303C	1.000	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717	76	0	0	68	15	18.07	-	-	-	C	127816681	G	C	127816681	3	2	240	1	0	0	0	0	1	0	0	0	1437	1174	41	2	909	2	BIN1	2	127816681	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2260830	127816681	115382692	642	19492										
MAP3K2	0	genome.wustl.edu	37	chr2	128066245	128066245	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccgtgacagacttcattCctgtccctgagagacagatg	10	12	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128066245	128066245	C	A	SNP	MAP3K2	ENST00000344908	human	ensembl	69_37n	-1	known	missense	c.1550	p.G517V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967	90	0	0	85	26	23.42	-	-	-	A	128066245	C	A	128066245	3	1	240	1	0	0	0	0	1	0	0	0	9321	855	30	2	317	2	MAP3K2	2	128066245	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	249564	128066245	115133128	643	19493										
MAP3K2	0	genome.wustl.edu	37	chr2	128075243	128075243	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatatggaaagtgttttttCctggggatccctcaaacagc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128075243	128075243	C	-	DEL	MAP3K2	ENST00000344908	human	ensembl	69_37n	-1	known	frame_shift_del	c.1288	p.E430fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967	69	0	0	74	9	10.47	-	-	-	-	128075243	C	-	128075243	7	5	240	1	0	1	0	1	0	0	0	0	9321	864	30	0	587	0	MAP3K2	2	128075243	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	8998	128075243	115124130	644	19494										
MYO7B	0	genome.wustl.edu	37	chr2	128317309	128317309	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgactcaggatgtcggggttCaggctggtaagaattgtatg	15	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128317309	128317309	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	silent	c.12	p.F4	0.211	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	150	1	0.66	144	34	19.1	-	-	-	T	128317309	C	T	128317309	2	4	240	1	0	0	0	0	0	0	0	1	10155	825	29	2		2	MYO7B	2	128317309	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	242066	128317309	114882064	645	19495										
MYO7B	0	genome.wustl.edu	37	chr2	128347711	128347711	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaccttaggaagccagttCaaacagtctctggaccagct	8	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128347711	128347711	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	silent	c.1899	p.F633	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	69	0	0	82	20	19.61	-	-	-	T	128347711	C	T	128347711	2	4	240	1	0	0	0	0	0	0	0	1	10155	825	29	2		2	MYO7B	2	128347711	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30402	128347711	114851662	646	19496										
WDR33	0	genome.wustl.edu	37	chr2	128471323	128471323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacggaggcccagggccccCtcgcctccacttctcttctt	8	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128471323	128471323	C	T	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3142	p.G1048R	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	42	0	0	47	10	17.54	-	-	-	T	128471323	C	T	128471323	3	4	240	1	0	0	0	0	1	0	0	0	17384	681	24	4	888	4	WDR33	2	128471323	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	123612	128471323	114728050	647	19497										
WDR33	0	genome.wustl.edu	37	chr2	128477068	128477068	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggggaggtcccagcattGatccttggggtggaggcccc	16	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128477068	128477068	G	C	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	nonsense	c.2531	p.S844*	0.353	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	31	0	0	27	4	12.9	-	-	-	C	128477068	G	C	128477068	4	2	240	1	0	0	0	0	0	1	0	0	17384	1294	45	2	1507	2	WDR33	2	128477068	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5745	128477068	114722305	648	19498										
UGGT1	0	genome.wustl.edu	37	chr2	128944323	128944323	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaagaatggctttggtgtGaaacgtggtgtgatgacgcc	14	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128944323	128944323	G	C	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.4426	p.E1476Q	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	143	0	0	137	32	18.93	-	-	-	C	128944323	G	C	128944323	3	2	240	1	0	0	0	0	1	0	0	0	17038	1291	45	2	4580	2	UGGT1	2	128944323	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	467255	128944323	114255050	649	19499										
UGGT1	0	genome.wustl.edu	37	chr2	128947305	128947305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttaggtcctcagaaacgtGaagaattatgatctctggag	10	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	128947305	128947305	G	A	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.4657	p.E1553K	0.888	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	225	0	0	169	46	21.4	-	-	-	A	128947305	G	A	128947305	3	1	240	1	0	0	0	0	1	0	0	0	17038	1291	45	2	4819	2	UGGT1	2	128947305	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2982	128947305	114252068	650	19500										
SMPD4	0	genome.wustl.edu	37	chr2	130910712	130910712	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctccgggtccccctggtaCtcaatttcaaaccttcgcag	8	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	130910712	130910712	C	G	SNP	SMPD4	ENST00000409031	human	ensembl	69_37n	-1	known	missense	c.2175	p.E725D	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699	43	0	0	58	16	21.62	-	-	-	G	130910712	C	G	130910712	3	3	240	1	0	0	0	0	1	0	0	0	14896	564	20	4	433	4	SMPD4	2	130910712	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1963407	130910712	112288661	651	19501										
FAM123C	0	genome.wustl.edu	37	chr2	131522018	131522018	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggcacacggcagccagctGgactctgagccccgctcagc	13	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	131522018	131522018	G	A	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	silent	c.2373	p.L791	0.056	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	13	0	0	22	6	21.43	-	-	-	A	131522018	G	A	131522018	2	1	240	1	0	0	0	0	0	0	0	1	5464	1335	47	4		4	FAM123C	2	131522018	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	611306	131522018	111677355	652	19502										
PLEKHB2	0	genome.wustl.edu	37	chr2	131883450	131883450	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatgccaatggactgcatCaacatccgcacggggcagga	11	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	131883450	131883450	C	G	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	1	known	missense	c.162	p.I54M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	46	0	0	55	8	12.7	-	-	-	G	131883450	C	G	131883450	3	3	240	1	0	0	0	0	1	0	0	0	12139	816	29	2	168	2	PLEKHB2	2	131883450	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	361432	131883450	111315923	653	19503										
MGAT5	0	genome.wustl.edu	37	chr2	135102603	135102603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaggacttgctcaattcaaGaaaactcttggaccatcctg	8	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	135102603	135102603	G	C	SNP	MGAT5	ENST00000281923	human	ensembl	69_37n	1	known	missense	c.1080	p.K360N	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	85	0	0	94	24	20.34	-	-	-	C	135102603	G	C	135102603	3	2	240	1	0	0	0	0	1	0	0	0	9619	933	33	2	1110	2	MGAT5	2	135102603	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3219153	135102603	108096770	654	19504										
CCNT2	0	genome.wustl.edu	37	chr2	135705412	135705412	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagatccctgtatcaactGatggaaagcattggtgggaa	14	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	135705412	135705412	G	A	SNP	CCNT2	ENST00000264157	human	ensembl	69_37n	1	known	missense	c.646	p.D216N	1.000	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258	102	0	0	73	21	22.34	-	-	-	A	135705412	G	A	135705412	3	1	240	1	0	0	0	0	1	0	0	0	2964	1290	45	2	672	2	CCNT2	2	135705412	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	602809	135705412	107493961	655	19505										
CCNT2	0	genome.wustl.edu	37	chr2	135712165	135712165	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagcatatggactacaaaGacacattcgacatgctggac	9	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	135712165	135712165	G	C	SNP	CCNT2	ENST00000264157	human	ensembl	69_37n	1	known	missense	c.2140	p.D714H	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258	56	0	0	61	25	29.07	-	-	-	C	135712165	G	C	135712165	3	2	240	1	0	0	0	0	1	0	0	0	2964	942	33	2	2174	2	CCNT2	2	135712165	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6753	135712165	107487208	656	19506										
RAB3GAP1	0	genome.wustl.edu	37	chr2	135870805	135870805	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctaagtgcaaccttcttctGagttctgtttctattgcctt	6	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	135870805	135870805	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	69_37n	1	known	silent	c.447	p.L149	0.999	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839	121	0	0	139	32	18.71	-	-	-	A	135870805	G	A	135870805	2	1	240	1	0	0	0	0	0	0	0	1	13018	1277	45	2		2	RAB3GAP1	2	135870805	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	158640	135870805	107328568	657	19507										
RAB3GAP1	0	genome.wustl.edu	37	chr2	135911344	135911344	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagaactgagtgcccggatGaagattccaagcaatatgtg	13	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	135911344	135911344	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	69_37n	1	known	missense	c.2187	p.M729I	1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839	76	0	0	104	21	16.8	-	-	-	A	135911344	G	A	135911344	3	1	240	1	0	0	0	0	1	0	0	0	13018	1290	45	2	2261	2	RAB3GAP1	2	135911344	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40539	135911344	107288029	658	19508										
LCT	0	genome.wustl.edu	37	chr2	136547151	136547151	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatctcacctggctggtgGagacaagcgtgaggccctgt	13	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	136547151	136547151	G	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	silent	c.5553	p.L1851	0.223	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	43	0	0	49	12	19.67	-	-	-	A	136547151	G	A	136547151	2	1	240	1	0	0	0	0	0	0	0	1	8747	1161	41	2		2	LCT	2	136547151	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	635807	136547151	106652222	659	19509										
CXCR4	0	genome.wustl.edu	37	chr2	136873300	136873300	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatgcttctcagtttcttCtggtaacccatgaccaggat	8	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	136873300	136873300	C	T	SNP	CXCR4	ENST00000409817	human	ensembl	69_37n	-1	known	silent	c.210	p.Q70	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_Chemokine_CXCR4_N,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CXCR4	HGNC	ENSG00000121966	105	0	0	113	33	22.6	-	-	-	T	136873300	C	T	136873300	2	4	240	1	0	0	0	0	0	0	0	1	4124	912	32	2		2	CXCR4	2	136873300	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	326149	136873300	106326073	660	19510										
THSD7B	0	genome.wustl.edu	37	chr2	137814778	137814778	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtttcgtgtacaagaagtGatggacaaaatgctatgtta	11	4	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	137814778	137814778	G	T	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.928	p.D310Y	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	17	0	0	23	9	28.12	-	-	-	T	137814778	G	T	137814778	3	4	240	1	0	0	0	0	1	0	0	0	15975	1290	45	2	841	2	THSD7B	2	137814778	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	941478	137814778	105384595	661	19511										
HNMT	0	genome.wustl.edu	37	chr2	138722051	138722051	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctgctctgtctttctcaGaaaaccaaatatggcatctt	5	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	138722051	138722051	G	A	SNP	HNMT	ENST00000410115	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	0.997	-	-	-	no_errors	HNMT	HGNC	ENSG00000150540	83	0	0	74	15	16.85	-	-	-	A	138722051	G	A	138722051	5	1	240	1	0	0	0	0	0	0	1	0	7306	957	33	2		2	HNMT	2	138722051	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	907273	138722051	104477322	662	19512										
SPOPL	0	genome.wustl.edu	37	chr2	139308479	139308479	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgttttattttaggtgcctGagggtaaacccaaagggatt	11	5	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	139308479	139308479	G	T	SNP	SPOPL	ENST00000280098	human	ensembl	69_37n	1	known	silent	c.207	p.L69	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228	85	0	0	84	14	14.29	-	-	-	T	139308479	G	T	139308479	2	4	240	1	0	0	0	0	0	0	0	1	15176	1277	45	2		2	SPOPL	2	139308479	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	586428	139308479	103890894	663	19513										
LRP1B	0	genome.wustl.edu	37	chr2	141072604	141072604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggccaacagtgacacctCaaatcacctttctcatttaa	5	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	141072604	141072604	C	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12705	p.L4235F	0.996	superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	102	0	0	107	22	17.05	-	-	-	G	141072604	C	G	141072604	3	3	240	1	0	0	0	0	1	0	0	0	9021	825	29	2	1130	2	LRP1B	2	141072604	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1764125	141072604	102126769	664	19514										
KIF5C	0	genome.wustl.edu	37	chr2	149851025	149851025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcccaggactcgctcagcGaagagctggcaaagctccga	12	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	149851025	149851025	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.1996	p.E666K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	42	0	0	41	15	26.79	-	-	-	A	149851025	G	A	149851025	3	1	240	1	0	0	0	0	1	0	0	0	8359	1059	37	1	1984	1	KIF5C	2	149851025	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8778421	149851025	93348348	665	19515										
KIF5C	0	genome.wustl.edu	37	chr2	149857021	149857021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaccaagagagagaaatGaagctggaaaagctcttgtg	14	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	149857021	149857021	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.2295	p.M765I	0.876	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	77	0	0	62	17	21.52	-	-	-	A	149857021	G	A	149857021	3	1	240	1	0	0	0	0	1	0	0	0	8359	1290	45	2	2295	2	KIF5C	2	149857021	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5996	149857021	93342352	666	19516										
RND3	0	genome.wustl.edu	37	chr2	151331453	151331453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaaatcagcacagcatccGaatcagggtaagagaggggg	14	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	151331453	151331453	G	A	SNP	RND3	ENST00000263895	human	ensembl	69_37n	-1	known	missense	c.284	p.S95L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963	98	0	0	93	27	22.5	-	-	-	A	151331453	G	A	151331453	3	1	240	1	0	0	0	0	1	0	0	0	13507	1059	37	1	462	1	RND3	2	151331453	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1474432	151331453	91867920	667	19517										
NMI	0	genome.wustl.edu	37	chr2	152139444	152139444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaagaatttgttgtgtgtCatctttatcagcttccatga	7	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152139444	152139444	C	T	SNP	NMI	ENST00000243346	human	ensembl	69_37n	-1	known	missense	c.19	p.D7N	0.000	NULL	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	NMI	HGNC	ENSG00000123609	136	0	0	82	51	38.35	-	-	-	T	152139444	C	T	152139444	3	4	240	1	0	0	0	0	1	0	0	0	10569	826	29	2	932	2	NMI	2	152139444	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	807991	152139444	91059929	668	19518										
TNFAIP6	0	genome.wustl.edu	37	chr2	152230076	152230076	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttcagatactgtggagatGagcttccagatgacatcatc	9	8	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152230076	152230076	G	A	SNP	TNFAIP6	ENST00000243347	human	ensembl	69_37n	1	known	missense	c.637	p.E213K	0.964	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Link,superfamily_CUB,superfamily_C-type_lectin_fold,smart_Link,smart_CUB,pfscan_CUB,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	143	0	0	160	40	20	-	-	-	A	152230076	G	A	152230076	3	1	240	1	0	0	0	0	1	0	0	0	16370	1291	45	2	655	2	TNFAIP6	2	152230076	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	90632	152230076	90969297	669	19519										
RIF1	0	genome.wustl.edu	37	chr2	152319552	152319553	+	Frame_Shift_Ins	INS	-	-	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagtaataatgatgaaagINSaaaaaaagctttaatttcat							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152319552	152319553	-	A	INS	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	frame_shift_ins	c.3518_3519	p.A1176fs	0.001:0.019	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	75	0	0	77	18	18.95	-	-	-	A	152319553	-	A	152319552	7	5	240	1	0	1	1	0	0	0	0	0	13443	942	33	0	3632	0	RIF1	2	152319552	Frame_Shift_Ins	INS	-	TCGA-AC-A23H-01A-11D-A159-09	89476	152319552	90879821	670	19520										
NEB	0	genome.wustl.edu	37	chr2	152402958	152402958	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtcctctttgtatttaatCtgagaggcaaacacagaaat	7	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152402958	152402958	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	splice_site	c.20368-1	e132-1	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091	71	0	0	87	15	14.71	-	-	-	T	152402958	C	T	152402958	5	4	240	1	0	0	0	0	0	0	1	0	10374	927	32	2	5515	2	NEB	2	152402958	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83406	152402958	90796415	671	19521										
NEB	0	genome.wustl.edu	37	chr2	152467319	152467319	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttggccagcaggatatctGgggtgtctggcatcacgtgg	15	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152467319	152467319	G	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.11867	p.P3956Q	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	148	0	0	99	41	29.29	-	-	-	T	152467319	G	T	152467319	3	4	240	1	0	0	0	0	1	0	0	0	10374	1348	47	4	14235	4	NEB	2	152467319	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64361	152467319	90732054	672	19522										
NEB	0	genome.wustl.edu	37	chr2	152531842	152531842	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacttggcctggagaaactGaggaagatcaggactcatgg	14	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152531842	152531842	G	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.3838	p.Q1280E	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	215	0	0	201	40	16.6	-	-	-	C	152531842	G	C	152531842	3	2	240	1	0	0	0	0	1	0	0	0	10374	1299	45	2	22440	2	NEB	2	152531842	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64523	152531842	90667531	673	19523										
CACNB4	0	genome.wustl.edu	37	chr2	152711875	152711875	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaaagattctttcaatttCactttgtacttccgcttaaa	3	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152711875	152711875	C	T	SNP	CACNB4	ENST00000339254	human	ensembl	69_37n	-1	known	missense	c.886	p.E296K	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389	78	0	0	95	22	18.64	-	-	-	T	152711875	C	T	152711875	3	4	240	1	0	0	0	0	1	0	0	0	2580	835	29	2	695	2	CACNB4	2	152711875	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	180033	152711875	90487498	674	19524										
CACNB4	0	genome.wustl.edu	37	chr2	152727057	152727057	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttgtacctcgtaacctttCagtgacggccccactaacac	6	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	152727057	152727057	C	G	SNP	CACNB4	ENST00000339254	human	ensembl	69_37n	-1	known	silent	c.690	p.L230	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389	64	0	0	77	16	17.2	-	-	-	G	152727057	C	G	152727057	2	3	240	1	0	0	0	0	0	0	0	1	2580	813	29	2		2	CACNB4	2	152727057	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15182	152727057	90472316	675	19525										
RPRM	0	genome.wustl.edu	37	chr2	154334842	154334842	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctcggacttgatgagcaGattgcagccgaggaagaaga	14	9	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	154334842	154334842	G	C	SNP	RPRM	ENST00000325926	human	ensembl	69_37n	-1	known	missense	c.238	p.L80V	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519	17	0	0	19	11	36.67	-	-	-	C	154334842	G	C	154334842	3	2	240	1	0	0	0	0	1	0	0	0	13704	933	33	2	95	2	RPRM	2	154334842	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1607785	154334842	88864531	676	19526										
GALNT13	0	genome.wustl.edu	37	chr2	155102453	155102453	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtatcctgttccccaaaGagaaatggacaggaggaaag	12	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	155102453	155102453	G	C	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	missense	c.815	p.R272T	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	77	0	0	70	15	17.65	-	-	-	C	155102453	G	C	155102453	3	2	240	1	0	0	0	0	1	0	0	0	6261	942	33	2	833	2	GALNT13	2	155102453	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	767611	155102453	88096920	677	19527										
TANC1	0	genome.wustl.edu	37	chr2	160035382	160035382	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctctgagctctatttgcttCagtgcaacatgaagttcatg	8	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160035382	160035382	C	T	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	nonsense	c.2218	p.Q740*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	28	0	0	41	13	24.07	-	-	-	T	160035382	C	T	160035382	4	4	240	1	0	0	0	0	0	1	0	0	15636	827	29	2	2264	2	TANC1	2	160035382	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4932929	160035382	83163991	678	19528										
BAZ2B	0	genome.wustl.edu	37	chr2	160182372	160182372	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcttgcctttctttgactCattagtcttttttcctttga	4	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160182372	160182372	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.6001	p.E2001K	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	161	0	0	160	19	10.61	-	-	-	T	160182372	C	T	160182372	3	4	240	1	0	0	0	0	1	0	0	0	1336	835	29	2	517	2	BAZ2B	2	160182372	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	146990	160182372	83017001	679	19529										
BAZ2B	0	genome.wustl.edu	37	chr2	160189167	160189167	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaagaagaagcagttcttCattatctccctttcgacaga	6	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160189167	160189167	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.5827	p.E1943K	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	72	0	0	56	19	25.33	-	-	-	T	160189167	C	T	160189167	3	4	240	1	0	0	0	0	1	0	0	0	1336	835	29	2	695	2	BAZ2B	2	160189167	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6795	160189167	83010206	680	19530										
BAZ2B	0	genome.wustl.edu	37	chr2	160287376	160287376	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaataaagtgtaggtaccaGagtgtgggcttgaagtaagt	13	3	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160287376	160287376	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.2192	p.S731C	1.000	superfamily_DNA-bd_integrase-typ	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	94	0	0	92	26	21.85	-	-	-	C	160287376	G	C	160287376	3	2	240	1	0	0	0	0	1	0	0	0	1336	942	33	2	4426	2	BAZ2B	2	160287376	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98209	160287376	82911997	681	19531										
BAZ2B	0	genome.wustl.edu	37	chr2	160289507	160289507	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgcaggatgggagaggcaGagggcattacaggtgtctga	17	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160289507	160289507	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.1661	p.S554C	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	166	0	0	182	36	16.51	-	-	-	C	160289507	G	C	160289507	3	2	240	1	0	0	0	0	1	0	0	0	1336	942	33	2	4961	2	BAZ2B	2	160289507	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2131	160289507	82909866	682	19532										
MARCH7	0	genome.wustl.edu	37	chr2	160604370	160604370	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaagaccaaaagaaaactCaatgagcactttacagttga	7	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160604370	160604370	C	G	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	nonsense	c.569	p.S190*	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	66	0	0	59	17	22.37	-	-	-	G	160604370	C	G	160604370	4	3	240	1	0	0	0	0	0	1	0	0	9377	838	29	2	583	2	MARCH7	2	160604370	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	314863	160604370	82595003	683	19533										
ITGB6	0	genome.wustl.edu	37	chr2	160983019	160983019	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagagcactccatcttcaGagacgcaggagtccgtgctg	12	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	160983019	160983019	G	A	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	missense	c.1754	p.S585F	0.984	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	48	0	0	40	13	24.53	-	-	-	A	160983019	G	A	160983019	3	1	240	1	0	0	0	0	1	0	0	0	7953	942	33	2	632	2	ITGB6	2	160983019	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	378649	160983019	82216354	684	19534										
RBMS1	0	genome.wustl.edu	37	chr2	161138771	161138771	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgtattgcgatttaccttGatagcagagccccgatactt	8	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	161138771	161138771	G	C	SNP	RBMS1	ENST00000392753	human	ensembl	69_37n	-1	known	missense	c.936	p.I312M	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250	151	0	0	146	22	13.1	-	-	-	C	161138771	G	C	161138771	3	2	240	1	0	0	0	0	1	0	0	0	13231	1305	45	2		2	RBMS1	2	161138771	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	155752	161138771	82060602	685	19535										
PSMD14	0	genome.wustl.edu	37	chr2	162224044	162224044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacaagtctatatctcttCcctggcactgttaaaagtag	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	162224044	162224044	C	T	SNP	PSMD14	ENST00000409682	human	ensembl	69_37n	1	known	missense	c.104	p.S35F	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PSMD14	HGNC	ENSG00000115233	61	0	0	58	9	13.43	-	-	-	T	162224044	C	T	162224044	3	4	240	1	0	0	0	0	1	0	0	0	12777	855	30	2	110	2	PSMD14	2	162224044	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1085273	162224044	80975329	686	19536										
SLC4A10	0	genome.wustl.edu	37	chr2	162738876	162738876	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaattacagatttttgttCattcttctgggacccctggg	8	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	162738876	162738876	C	T	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	silent	c.1116	p.F372	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	51	0	0	34	18	34.62	-	-	-	T	162738876	C	T	162738876	2	4	240	1	0	0	0	0	0	0	0	1	14740	825	29	2		2	SLC4A10	2	162738876	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	514832	162738876	80460497	687	19537										
FAP	0	genome.wustl.edu	37	chr2	163070549	163070549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaaacatactcgttcatCagtaacccacgtgagccaac	6	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	163070549	163070549	C	T	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.901	p.D301N	0.999	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	55	0	0	58	16	21.62	-	-	-	T	163070549	C	T	163070549	3	4	240	1	0	0	0	0	1	0	0	0	5719	826	29	2	1445	2	FAP	2	163070549	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	331673	163070549	80128824	688	19538										
KCNH7	0	genome.wustl.edu	37	chr2	163228505	163228505	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgtcttgttttaaaagtGaagtcaagttgtcttctgaa	8	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	163228505	163228505	G	C	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	nonsense	c.3425	p.S1142*	0.996	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	55	0	0	48	11	18.64	-	-	-	C	163228505	G	C	163228505	4	2	240	1	0	0	0	0	0	1	0	0	8091	1294	45	2	169	2	KCNH7	2	163228505	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	157956	163228505	79970868	689	19539										
FIGN	0	genome.wustl.edu	37	chr2	164466816	164466816	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagtccactgaacgcgtctGacctcaacactggccataaa	7	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	164466816	164466816	G	C	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	nonsense	c.1526	p.S509*	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	80	0	0	85	17	16.67	-	-	-	C	164466816	G	C	164466816	4	2	240	1	0	0	0	0	0	1	0	0	5937	1294	45	2	757	2	FIGN	2	164466816	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1238311	164466816	78732557	690	19540										
SCN2A	0	genome.wustl.edu	37	chr2	166170140	166170140	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaattatagccagtgtcctGaaggatacatctgtgtgaag	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	166170140	166170140	G	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.1045	p.E349Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	103	0	0	76	39	33.62	-	-	-	C	166170140	G	C	166170140	3	2	240	1	0	0	0	0	1	0	0	0	14004	1291	45	2	1171	2	SCN2A	2	166170140	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1703324	166170140	77029233	691	19541										
TTC21B	0	genome.wustl.edu	37	chr2	166806235	166806235	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatagtaattaatcaaagtCtaaatggaaataatgaaaaa	5	3	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	166806235	166806235	C	G	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	splice_site	c.22-1	e2-1	1.000	-	-	-	no_errors	TTC21B	HGNC	ENSG00000123607	62	0	0	53	17	24.29	-	-	-	G	166806235	C	G	166806235	5	3	240	1	0	0	0	0	0	0	1	0	16785	927	32	2	4041	2	TTC21B	2	166806235	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	636095	166806235	76393138	692	19542										
SCN1A	0	genome.wustl.edu	37	chr2	166847916	166847916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtcaattatcatgtcttCttttataagaagattagccc	5	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	166847916	166847916	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.5869	p.E1957Q	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	163	0	0	162	30	15.62	-	-	-	G	166847916	C	G	166847916	3	3	240	1	0	0	0	0	1	0	0	0	14002	922	32	2	164	2	SCN1A	2	166847916	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41681	166847916	76351457	693	19543										
SCN9A	0	genome.wustl.edu	37	chr2	167085206	167085206	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatgggacacttacaacttGaagcagagataggtaaccaa	9	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167085206	167085206	G	C	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.4204	p.Q1402E	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	79	0	0	89	27	23.28	-	-	-	C	167085206	G	C	167085206	3	2	240	1	0	0	0	0	1	0	0	0	14013	1299	45	2	1789	2	SCN9A	2	167085206	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	237290	167085206	76114167	694	19544										
SCN9A	0	genome.wustl.edu	37	chr2	167099064	167099064	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatgaagctttcaaaccaaCtgtgttcaacaatcttgtag	6	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167099064	167099064	C	G	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.3578	p.S1193T	0.998	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	121	0	0	83	24	22.43	-	-	-	G	167099064	C	G	167099064	3	3	240	1	0	0	0	0	1	0	0	0	14013	565	20	4	2427	4	SCN9A	2	167099064	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13858	167099064	76100309	695	19545										
SCN9A	0	genome.wustl.edu	37	chr2	167108278	167108278	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaatttttgtcttaccatCtgtgaaacaggcctctggct	7	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167108278	167108278	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.3472	p.D1158N	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	97	0	0	101	17	14.41	-	-	-	T	167108278	C	T	167108278	3	4	240	1	0	0	0	0	1	0	0	0	14013	913	32	2	2537	2	SCN9A	2	167108278	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9214	167108278	76091095	696	19546										
SCN9A	0	genome.wustl.edu	37	chr2	167133666	167133666	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtgggagcgtacagtcatCattgatcttgcagacacatt	10	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167133666	167133666	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.2704	p.D902N	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	132	0	0	143	28	16.37	-	-	-	T	167133666	C	T	167133666	3	4	240	1	0	0	0	0	1	0	0	0	14013	826	29	2	3313	2	SCN9A	2	167133666	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25388	167133666	76065707	697	19547										
SCN7A	0	genome.wustl.edu	37	chr2	167273228	167273228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtacttactacttgaagcaGagaaaggaaaccatttccaa	7	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167273228	167273228	G	C	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.3403	p.L1135V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	58	0	0	54	10	15.62	-	-	-	C	167273228	G	C	167273228	3	2	240	1	0	0	0	0	1	0	0	0	14011	933	33	2	1669	2	SCN7A	2	167273228	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	139562	167273228	75926145	698	19548										
SCN7A	0	genome.wustl.edu	37	chr2	167300026	167300026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacttaccatcctgaataatCgaagaagagccattcctgca	6	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	167300026	167300026	C	G	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.1787	p.R596P	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	64	0	0	74	21	22.11	-	-	-	G	167300026	C	G	167300026	3	3	240	1	0	0	0	0	1	0	0	0	14011	884	31	3	3313	3	SCN7A	2	167300026	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26798	167300026	75899347	699	19549										
XIRP2	0	genome.wustl.edu	37	chr2	168100820	168100820	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaggtggaaggagttacaaGaggtgctgtagagttaaata	15	2	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	168100820	168100820	G	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.2918	p.R973T	0.002	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	31	0	0	24	4	14.29	-	-	-	C	168100820	G	C	168100820	3	2	240	1	0	0	0	0	1	0	0	0	17527	942	33	2	2948	2	XIRP2	2	168100820	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	800794	168100820	75098553	700	19550										
XIRP2	0	genome.wustl.edu	37	chr2	168101809	168101809	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagaaaacaattactgaaGaagtaatacagggtgatgta	9	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	168101809	168101809	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.3907	p.E1303K	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	68	0	0	45	6	11.76	-	-	-	A	168101809	G	A	168101809	3	1	240	1	0	0	0	0	1	0	0	0	17527	943	33	2	3937	2	XIRP2	2	168101809	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	989	168101809	75097564	701	19551										
XIRP2	0	genome.wustl.edu	37	chr2	168106293	168106293	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaaccaggaagataagctCaagatggttcccaggaagca	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	168106293	168106293	C	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.8391	p.L2797	0.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	40	0	0	37	11	22.92	-	-	-	G	168106293	C	G	168106293	2	3	240	1	0	0	0	0	0	0	0	1	17527	813	29	2		2	XIRP2	2	168106293	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4484	168106293	75093080	702	19552										
XIRP2	0	genome.wustl.edu	37	chr2	168106546	168106546	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaccgctgaaagtaaagctGaacataaaaaattgccccag	8	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	168106546	168106546	G	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.8644	p.E2882Q	0.151	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	55	0	0	45	17	26.98	-	-	-	C	168106546	G	C	168106546	3	2	240	1	0	0	0	0	1	0	0	0	17527	1291	45	2	8674	2	XIRP2	2	168106546	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	253	168106546	75092827	703	19553										
XIRP2	0	genome.wustl.edu	37	chr2	168107180	168107180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatcatgaagcaactgttcGtagtcacgtgaaaacccatc	7	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	168107180	168107180	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9278	p.R3093H	0.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	80	0	0	73	10	12.05	-	-	-	A	168107180	G	A	168107180	3	1	240	1	0	0	0	0	1	0	0	0	17527	1145	40	1	9308	1	XIRP2	2	168107180	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	634	168107180	75092193	704	19554										
NOSTRIN	0	genome.wustl.edu	37	chr2	169718518	169718518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttgcaaggccttgtattCttttcaagccaggcaagatg	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	169718518	169718518	C	G	SNP	NOSTRIN	ENST00000444448	human	ensembl	69_37n	1	known	missense	c.1514	p.S505C	0.645	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072	134	0	0	103	29	21.97	-	-	-	G	169718518	C	G	169718518	3	3	240	1	0	0	0	0	1	0	0	0	10618	913	32	2	1576	2	NOSTRIN	2	169718518	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1611338	169718518	73480855	705	19555										
G6PC2	0	genome.wustl.edu	37	chr2	169757939	169757939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaattttatgtccaatgttgGagaccccaggaatatctttt	7	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	169757939	169757939	G	T	SNP	G6PC2	ENST00000375363	human	ensembl	69_37n	1	known	missense	c.98	p.G33V	0.997	superfamily_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC2	HGNC	ENSG00000152254	198	0	0	161	42	20.69	-	-	-	T	169757939	G	T	169757939	3	4	240	1	0	0	0	0	1	0	0	0	6193	1174	41	2	100	2	G6PC2	2	169757939	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39421	169757939	73441434	706	19556										
ABCB11	0	genome.wustl.edu	37	chr2	169814582	169814582	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattctggagcactgaatttCagaatcctcctaactggggc	9	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	169814582	169814582	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	silent	c.2235	p.L745	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	61	0	0	43	14	24.56	-	-	-	T	169814582	C	T	169814582	2	4	240	1	0	0	0	0	0	0	0	1	42	813	29	2		2	ABCB11	2	169814582	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	56643	169814582	73384791	707	19557										
ABCB11	0	genome.wustl.edu	37	chr2	169825950	169825950	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcctttccagtaattcttCatgggtccctctttccactg	5	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	169825950	169825950	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.1921	p.E641K	0.997	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	99	0	0	116	29	20	-	-	-	T	169825950	C	T	169825950	3	4	240	1	0	0	0	0	1	0	0	0	42	835	29	2	2096	2	ABCB11	2	169825950	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11368	169825950	73373423	708	19558										
LRP2	0	genome.wustl.edu	37	chr2	170063427	170063427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccataacgaatcacttcaGagttctctccattgatacga	6	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	170063427	170063427	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.6803	p.S2268C	0.019	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	108	0	0	106	42	28.38	-	-	-	C	170063427	G	C	170063427	3	2	240	1	0	0	0	0	1	0	0	0	9022	942	33	2	7328	2	LRP2	2	170063427	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	237477	170063427	73135946	709	19559										
LRP2	0	genome.wustl.edu	37	chr2	170097850	170097850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcactgaaattcatctgaGtggcacataccaggaggcct	11	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	170097850	170097850	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.3693	p.H1231Q	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	40	0	0	40	19	32.2	-	-	-	C	170097850	G	C	170097850	3	2	240	1	0	0	0	0	1	0	0	0	9022	1020	36	4	10494	4	LRP2	2	170097850	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	34423	170097850	73101523	710	19560										
LRP2	0	genome.wustl.edu	37	chr2	170136934	170136934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacacccacggccactccacGattctgagactccactagga	7	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	170136934	170136934	G	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1267	p.R423C	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	48	0	0	58	12	17.14	-	-	-	A	170136934	G	A	170136934	3	1	240	1	0	0	0	0	1	0	0	0	9022	1058	37	1	12976	1	LRP2	2	170136934	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39084	170136934	73062439	711	19561										
PPIG	0	genome.wustl.edu	37	chr2	170492643	170492643	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagatcaagggatcgtttCagacgtagtgagactcctcc	10	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	170492643	170492643	C	T	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	1	known	silent	c.1059	p.F353	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	66	0	0	97	17	14.91	-	-	-	T	170492643	C	T	170492643	2	4	240	1	0	0	0	0	0	0	0	1	12401	825	29	2		2	PPIG	2	170492643	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	355709	170492643	72706730	712	19562										
UBR3	0	genome.wustl.edu	37	chr2	170732338	170732338	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaaggaccttaacaaagtCcttcagcttttggaacctca	7	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	170732338	170732338	C	T	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	silent	c.723	p.V241	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	96	0	0	93	26	21.85	-	-	-	T	170732338	C	T	170732338	2	4	240	1	0	0	0	0	0	0	0	1	17000	842	30	2		2	UBR3	2	170732338	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	239695	170732338	72467035	713	19563										
TLK1	0	genome.wustl.edu	37	chr2	171974326	171974326	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatctagcttccaataactCttgccttcttggatccagac	5	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	171974326	171974326	C	T	SNP	TLK1	ENST00000431350	human	ensembl	69_37n	-1	known	missense	c.181	p.E61K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK1	HGNC	ENSG00000198586	97	0	0	95	19	16.67	-	-	-	T	171974326	C	T	171974326	3	4	240	1	0	0	0	0	1	0	0	0	16038	922	32	2	2245	2	TLK1	2	171974326	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1241988	171974326	71225047	714	19564										
CYBRD1	0	genome.wustl.edu	37	chr2	172411263	172411263	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatggacaaatcagattcaGagttaaacagtgaagtagca	9	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	172411263	172411263	G	C	SNP	CYBRD1	ENST00000321348	human	ensembl	69_37n	1	known	missense	c.787	p.E263Q	0.990	NULL	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967	54	0	0	60	12	16.67	-	-	-	C	172411263	G	C	172411263	3	2	240	1	0	0	0	0	1	0	0	0	4165	943	33	2	801	2	CYBRD1	2	172411263	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	436937	172411263	70788110	715	19565										
HAT1	0	genome.wustl.edu	37	chr2	172822934	172822934	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgttttatctgcagatttGagaagtataataaggatgga							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	172822934	172822934	G	-	DEL	HAT1	ENST00000264108	human	ensembl	69_37n	1	known	frame_shift_del	c.616	p.E206fs	1.000	superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	pfam_Hat1_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	-	no_errors	HAT1	HGNC	ENSG00000128708	71	0	0	63	19	22.62	-	-	-	-	172822934	G	-	172822934	7	5	240	1	0	1	0	1	0	0	0	0	7015	1291	45	0	642	0	HAT1	2	172822934	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	411671	172822934	70376439	716	19566	205	2								
HAT1	0	genome.wustl.edu	37	chr2	172822936	172822936	+	Silent	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttttatctgcagatttgaGaagtataataaggatggagc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	172822936	172822936	G	A	SNP	HAT1	ENST00000264108	human	ensembl	69_37n	1	known	silent	c.618	p.E206	1.000	superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	pfam_Hat1_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	-	no_errors	HAT1	HGNC	ENSG00000128708	73	0	0	64	21	24.71	-	-	-	A	172822936	G	A	172822936	2	1	240	1	0	0	0	0	0	0	0	1	7015	933	33	2		2	HAT1	2	172822936	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2	172822936	70376437	717	19567	205	2								
CDCA7	0	genome.wustl.edu	37	chr2	174228557	174228557	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctttttagcttgcaaaactCatgtctgaattagaaagctt	6	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	174228557	174228557	C	G	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	silent	c.633	p.L211	0.994	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	214	0	0	179	48	21.15	-	-	-	G	174228557	C	G	174228557	2	3	240	1	0	0	0	0	0	0	0	1	3119	813	29	2		2	CDCA7	2	174228557	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1405621	174228557	68970816	718	19568										
SP3	0	genome.wustl.edu	37	chr2	174777920	174777920	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagatgagctctcagatgtGaggtcttcccatagacttta	10	9	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	174777920	174777920	G	C	SNP	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	nonsense	c.1907	p.S636*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	118	0	0	123	28	18.54	-	-	-	C	174777920	G	C	174777920	4	2	240	1	0	0	0	0	0	1	0	0	15054	1294	45	2	446	2	SP3	2	174777920	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	549363	174777920	68421453	719	19569										
OLA1	0	genome.wustl.edu	37	chr2	175087833	175087833	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccaggccctgcccattgtGagctcctttcacaaggccag	9	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	175087833	175087833	G	C	SNP	OLA1	ENST00000284719	human	ensembl	69_37n	-1	known	missense	c.301	p.H101D	1.000	pfam_GTP_binding_domain,pirsf_CHP00092,prints_GTP_binding_domain,tigrfam_CHP00092	pfam_DUF933,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,pirsf_CHP00092,prints_GTP_binding_domain,tigrfam_CHP00092	-	no_errors	OLA1	HGNC	ENSG00000138430	94	0	0	83	17	17	-	-	-	C	175087833	G	C	175087833	3	2	240	1	0	0	0	0	1	0	0	0	10923	1290	45	2	921	2	OLA1	2	175087833	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	309913	175087833	68111540	720	19570										
GPR155	0	genome.wustl.edu	37	chr2	175326362	175326362	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaggaatttgtaccctctCtcgctttttcaaaagaaaca	5	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	175326362	175326362	C	G	SNP	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475Q	1.000	NULL	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328	37	0	0	58	13	18.31	-	-	-	G	175326362	C	G	175326362	3	3	240	1	0	0	0	0	1	0	0	0	6710	922	32	2	1225	2	GPR155	2	175326362	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	238529	175326362	67873011	721	19571										
ATF2	0	genome.wustl.edu	37	chr2	175939549	175939549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaatgtcttctgaactatCatctttatcagcagctgggt	8	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	175939549	175939549	C	T	SNP	ATF2	ENST00000264110	human	ensembl	69_37n	-1	known	missense	c.1306	p.D436N	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF2	HGNC	ENSG00000115966	85	0	0	88	18	16.98	-	-	-	T	175939549	C	T	175939549	3	4	240	1	0	0	0	0	1	0	0	0	1084	826	29	2	215	2	ATF2	2	175939549	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	613187	175939549	67259824	722	19572										
KIAA1715	0	genome.wustl.edu	37	chr2	176812261	176812261	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgtcttggtaacacatttGatgatagggctggagtaaca	12	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	176812261	176812261	G	C	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	nonsense	c.653	p.S218*	1.000	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	100	0	0	95	26	21.49	-	-	-	C	176812261	G	C	176812261	4	2	240	1	0	0	0	0	0	1	0	0	8306	1294	45	2	653	2	KIAA1715	2	176812261	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	872712	176812261	66387112	723	19573										
NFE2L2	0	genome.wustl.edu	37	chr2	178096372	178096372	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgcaaagtgatagatcaGaaacatcaatgggcccattt	8	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	178096372	178096372	G	C	SNP	NFE2L2	ENST00000397062	human	ensembl	69_37n	-1	known	missense	c.959	p.S320C	1.000	superfamily_Sepin_dom	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,superfamily_Sepin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	72	0	0	75	34	31.19	-	-	-	C	178096372	G	C	178096372	3	2	240	1	0	0	0	0	1	0	0	0	10440	942	33	2	862	2	NFE2L2	2	178096372	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1284111	178096372	65103001	724	19574										
OSBPL6	0	genome.wustl.edu	37	chr2	179209060	179209060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcacaactcggcgccggcaGaggctagcggcagcagtggc	16	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179209060	179209060	G	C	SNP	OSBPL6	ENST00000315022	human	ensembl	69_37n	1	known	missense	c.972	p.Q324H	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156	49	0	0	61	22	26.51	-	-	-	C	179209060	G	C	179209060	3	2	240	1	0	0	0	0	1	0	0	0	11354	933	33	2	1116	2	OSBPL6	2	179209060	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1112688	179209060	63990313	725	19575										
PRKRA	0	genome.wustl.edu	37	chr2	179308111	179308111	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccatgatgaatagccaattCctataaaatcaagatgaggc	8	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179308111	179308111	C	G	SNP	PRKRA	ENST00000325748	human	ensembl	69_37n	-1	known	missense	c.397	p.E133Q	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	PRKRA	HGNC	ENSG00000180228	87	0	0	59	7	10.61	-	-	-	G	179308111	C	G	179308111	3	3	240	1	0	0	0	0	1	0	0	0	12605	869	30	2	560	2	PRKRA	2	179308111	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	99051	179308111	63891262	726	19576										
TTN	0	genome.wustl.edu	37	chr2	179397415	179397415	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggtagtaaaagtcataatCaggagaaggtgtacgccggc	13	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179397415	179397415	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.96223	p.D32075N	0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	73	0	0	51	16	23.88	-	-	-	T	179397415	C	T	179397415	3	4	240	1	0	0	0	0	1	0	0	0	16832	826	29	2	4072	2	TTN	2	179397415	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89304	179397415	63801958	727	19577										
TTN	0	genome.wustl.edu	37	chr2	179422694	179422694	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctagcacaacaatgttaatGaaagctttggttgtaccact	7	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179422694	179422694	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.79683	p.F26561	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	55	0	0	45	15	25	-	-	-	A	179422694	G	A	179422694	2	1	240	1	0	0	0	0	0	0	0	1	16832	1281	45	2		2	TTN	2	179422694	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25279	179422694	63776679	728	19578										
TTN	0	genome.wustl.edu	37	chr2	179431833	179431833	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaactttcagagaattggtCacaacttctgaagcaacaac	7	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179431833	179431833	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.71322	p.V23774	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	46	0	0	63	15	19.23	-	-	-	A	179431833	C	A	179431833	2	1	240	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179431833	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9139	179431833	63767540	729	19579										
TTN	0	genome.wustl.edu	37	chr2	179438716	179438716	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaaacatcagcttccagtCtgaatgcttcacctgctttt	6	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179438716	179438716	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.64439	p.R21480T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	118	0	0	89	20	18.35	-	-	-	G	179438716	C	G	179438716	3	3	240	1	0	0	0	0	1	0	0	0	16832	913	32	2	35984	2	TTN	2	179438716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6883	179438716	63760657	730	19580										
TTN	0	genome.wustl.edu	37	chr2	179444447	179444447	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgttgccacttattttcttCagtcaggaaatcaactacat	5	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179444447	179444447	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.59773	p.E19925K	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	106	0	0	88	19	17.76	-	-	-	T	179444447	C	T	179444447	3	4	240	1	0	0	0	0	1	0	0	0	16832	835	29	2	40678	2	TTN	2	179444447	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5731	179444447	63754926	731	19581										
TTN	0	genome.wustl.edu	37	chr2	179455824	179455824	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccttgtatcttgtttctCaacaatataatttatcacag	3	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179455824	179455824	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52924	p.E17642Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	65	0	0	61	28	31.46	-	-	-	G	179455824	C	G	179455824	3	3	240	1	0	0	0	0	1	0	0	0	16832	835	29	2	47587	2	TTN	2	179455824	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11377	179455824	63743549	732	19582										
TTN	0	genome.wustl.edu	37	chr2	179468902	179468902	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgccaaaacttttggttttCctggaggtccaggaaggcga	13	8	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179468902	179468902	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.46808	p.G15603A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	99	0	0	113	24	17.52	-	-	-	G	179468902	C	G	179468902	3	3	240	1	0	0	0	0	1	0	0	0	16832	855	30	2	53505	2	TTN	2	179468902	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13078	179468902	63730471	733	19583										
TTN	0	genome.wustl.edu	37	chr2	179482160	179482160	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgggcttcctccatctttCagaggaggttcccatttgag	10	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179482160	179482160	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.39948	p.L13316	0.990	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	111	0	0	128	19	12.93	-	-	-	T	179482160	C	T	179482160	2	4	240	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179482160	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13258	179482160	63717213	734	19584										
TTN	0	genome.wustl.edu	37	chr2	179486000	179486000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccctcttccactggactgGaaagctttcttttgatatag	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179486000	179486000	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.37741	p.P12581T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	188	0	0	170	45	20.93	-	-	-	T	179486000	G	T	179486000	3	4	240	1	0	0	0	0	1	0	0	0	16832	1174	41	2	62716	2	TTN	2	179486000	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3840	179486000	63713373	735	19585										
TTN	0	genome.wustl.edu	37	chr2	179575848	179575848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagggtttgtagctgtgcagGaatactggcctgcaaggctc	14	8	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179575848	179575848	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.24383	p.S8128F	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	76	0	0	64	21	24.71	-	-	-	A	179575848	G	A	179575848	3	1	240	1	0	0	0	0	1	0	0	0	16832	1174	41	2	76478	2	TTN	2	179575848	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	89848	179575848	63623525	736	19586										
TTN	0	genome.wustl.edu	37	chr2	179586854	179586854	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtcaaagaagggagatttCttgggttctggaggatgaga	15	3	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179586854	179586854	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.18804	p.K6268	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	77	0	0	77	25	24.51	-	-	-	T	179586854	C	T	179586854	2	4	240	1	0	0	0	0	0	0	0	1	16832	912	32	2		2	TTN	2	179586854	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11006	179586854	63612519	737	19587										
TTN	0	genome.wustl.edu	37	chr2	179588746	179588746	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccactgacaatcttggttttCtcatgaaaccaggcaactga	7	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179588746	179588746	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.17508	p.E5836	0.981	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	72	0	0	73	13	15.12	-	-	-	T	179588746	C	T	179588746	2	4	240	1	0	0	0	0	0	0	0	1	16832	912	32	2		2	TTN	2	179588746	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1892	179588746	63610627	738	19588										
TTN	0	genome.wustl.edu	37	chr2	179596445	179596445	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagtcaccctggcactgcaGatgctgctgcccacctcatt	8	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179596445	179596445	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.13425	p.I4475	0.544	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	49	0	0	65	19	22.62	-	-	-	A	179596445	G	A	179596445	2	1	240	1	0	0	0	0	0	0	0	1	16832	932	33	2		2	TTN	2	179596445	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7699	179596445	63602928	739	19589										
TTN	0	genome.wustl.edu	37	chr2	179606109	179606109	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagatggcaggaagcccttGagcacagcgaattggtttta	12	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179606109	179606109	G	C	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11338	p.Q3780E	0.123	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	43	0	0	47	24	33.8	-	-	-	C	179606109	G	C	179606109	3	2	240	1	0	0	0	0	1	0	0	0	16832	1299	45	2	92938	2	TTN	2	179606109	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9664	179606109	63593264	740	19590										
TTN	0	genome.wustl.edu	37	chr2	179612625	179612625	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgttcttcagtcatcaaGagtgggaagcactgactcag	11	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179612625	179612625	G	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	silent	c.14502	p.L4834	0.003	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	30	0	0	23	7	23.33	-	-	-	C	179612625	G	C	179612625	2	2	240	1	0	0	0	0	0	0	0	1	16832	929	33	2		2	TTN	2	179612625	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6516	179612625	63586748	741	19591										
TTN	0	genome.wustl.edu	37	chr2	179614138	179614138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaatctgggaattttttctCtagaaggtatgcaacgcacc	8	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179614138	179614138	C	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.12989	p.R4330T	0.927	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	86	0	0	90	24	21.05	-	-	-	G	179614138	C	G	179614138	3	3	240	1	0	0	0	0	1	0	0	0	16832	913	32	2	97308	2	TTN	2	179614138	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1513	179614138	63585235	742	19592										
TTN	0	genome.wustl.edu	37	chr2	179640263	179640263	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaccatttttgtaccattCacattcggggtctggtttcc	8	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179640263	179640263	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6328	p.E2110Q	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	74	0	0	73	22	23.16	-	-	-	G	179640263	C	G	179640263	3	3	240	1	0	0	0	0	1	0	0	0	16832	835	29	2	105000	2	TTN	2	179640263	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26125	179640263	63559110	743	19593										
TTN	0	genome.wustl.edu	37	chr2	179641400	179641400	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaccaccatcgttgggtCaccaatgggtgttagcctgc	10	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	179641400	179641400	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.5191	p.D1731N	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	69	0	0	65	15	18.75	-	-	-	T	179641400	C	T	179641400	3	4	240	1	0	0	0	0	1	0	0	0	16832	826	29	2	106137	2	TTN	2	179641400	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1137	179641400	63557973	744	19594										
CWC22	0	genome.wustl.edu	37	chr2	180815395	180815395	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggggaggatttattttgctCaacatctggtttctgcgcca	11	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	180815395	180815395	C	G	SNP	CWC22	ENST00000295749	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662Q	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	155	0	0	140	28	16.67	-	-	-	G	180815395	C	G	180815395	3	3	240	1	0	0	0	0	1	0	0	0	4099	835	29	2	750	2	CWC22	2	180815395	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1173995	180815395	62383978	745	19595										
ITGA4	0	genome.wustl.edu	37	chr2	182360134	182360134	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttcggtctgattctgctgTcttgctaaggtaagactgat	10	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	182360134	182360134	T	A	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.1376	p.V459D	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	309	2	0.64	267	76	22.16	-	-	-	A	182360134	T	A	182360134	3	1	240	1	0	0	0	0	1	0	0	0	7932	1667	58	5	1426	5	ITGA4	2	182360134	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1544739	182360134	60839239	746	19596										
ITGA4	0	genome.wustl.edu	37	chr2	182363438	182363438	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctaatggaacttctgacgtGattacaggaagcatacaggt	10	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	182363438	182363438	G	C	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	silent	c.1629	p.V543	0.367	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	115	0	0	105	31	22.79	-	-	-	C	182363438	G	C	182363438	2	2	240	1	0	0	0	0	0	0	0	1	7932	1277	45	2		2	ITGA4	2	182363438	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3304	182363438	60835935	747	19597										
SSFA2	0	genome.wustl.edu	37	chr2	182780892	182780892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaccaccaatgtctcagtCtacctgttcccttcattcca	3	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	182780892	182780892	C	G	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.2525	p.S842C	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	67	0	0	89	15	14.42	-	-	-	G	182780892	C	G	182780892	3	3	240	1	0	0	0	0	1	0	0	0	15274	913	32	2	2567	2	SSFA2	2	182780892	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	417454	182780892	60418481	748	19598										
DNAJC10	0	genome.wustl.edu	37	chr2	183622506	183622506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaacgttcaaagataccctGagataagattttttccccca	5	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	183622506	183622506	G	C	SNP	DNAJC10	ENST00000264065	human	ensembl	69_37n	1	known	missense	c.1897	p.E633Q	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C	pfam_Thioredoxin_domain,pfam_DnaJ_N,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_N,smart_DnaJ_N,pirsf_DnaJ_homolog_subfam-C,prints_Hsp_DnaJ,prints_Thioredoxin,pfscan_DnaJ_N	-	no_errors	DNAJC10	HGNC	ENSG00000077232	132	0	0	100	23	18.7	-	-	-	C	183622506	G	C	183622506	3	2	240	1	0	0	0	0	1	0	0	0	4664	1291	45	2	1963	2	DNAJC10	2	183622506	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	841614	183622506	59576867	749	19599										
ZNF804A	0	genome.wustl.edu	37	chr2	185803052	185803052	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgccattatgaactggctGaggcccttccacaaggaaag	10	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	185803052	185803052	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	missense	c.2929	p.E977K	0.997	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	43	0	0	49	7	12.5	-	-	-	A	185803052	G	A	185803052	3	1	240	1	0	0	0	0	1	0	0	0	18263	1291	45	2	2943	2	ZNF804A	2	185803052	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2180546	185803052	57396321	750	19600										
TFPI	0	genome.wustl.edu	37	chr2	188343439	188343439	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctatccaatcctagaaaGaacatggatgcatgaatgca	8	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	188343439	188343439	G	C	SNP	TFPI	ENST00000339091	human	ensembl	69_37n	-1	known	missense	c.720	p.F240L	0.154	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436	120	0	0	91	18	16.51	-	-	-	C	188343439	G	C	188343439	3	2	240	1	0	0	0	0	1	0	0	0	15903	933	33	2	334	2	TFPI	2	188343439	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2540387	188343439	54855934	751	19601										
COL3A1	0	genome.wustl.edu	37	chr2	189875004	189875004	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcataagtgccaatcctttGaatgttccacggaaacactg	8	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	189875004	189875004	G	C	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.3924	p.L1308F	0.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	96	0	0	101	23	18.55	-	-	-	C	189875004	G	C	189875004	3	2	240	1	0	0	0	0	1	0	0	0	3718	1281	45	2	4118	2	COL3A1	2	189875004	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1531565	189875004	53324369	752	19602										
MSTN	0	genome.wustl.edu	37	chr2	190927171	190927171	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttaatggcttctattcttGaagatttagtgttttgtctc	7	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	190927171	190927171	G	C	SNP	MSTN	ENST00000260950	human	ensembl	69_37n	-1	known	nonsense	c.152	p.S51*	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	MSTN	HGNC	ENSG00000138379	213	0	0	178	33	14.93	-	-	-	C	190927171	G	C	190927171	4	2	240	1	0	0	0	0	0	1	0	0	9965	1294	45	2	987	2	MSTN	2	190927171	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1052167	190927171	52272202	753	19603										
STAT1	0	genome.wustl.edu	37	chr2	191862979	191862979	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcattaaatacatcttcttGagtaacagctgttcttgttt	6	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	191862979	191862979	G	C	SNP	STAT1	ENST00000361099	human	ensembl	69_37n	-1	known	silent	c.597	p.L199	0.106	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	151	0	0	136	29	17.58	-	-	-	C	191862979	G	C	191862979	2	2	240	1	0	0	0	0	0	0	0	1	15355	1277	45	2		2	STAT1	2	191862979	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	935808	191862979	51336394	754	19604										
STAT4	0	genome.wustl.edu	37	chr2	191896200	191896200	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgagatggggataaaaacaGaaggaacataacctttgtca	10	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	191896200	191896200	G	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.2087	p.S696F	0.997	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	110	1	0.9	135	16	10.6	-	-	-	A	191896200	G	A	191896200	3	1	240	1	0	0	0	0	1	0	0	0	15358	942	33	2	171	2	STAT4	2	191896200	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33221	191896200	51303173	755	19605										
STAT4	0	genome.wustl.edu	37	chr2	191927564	191927564	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattggaatgggatcaccttCatatgtcattttggtagatt	9	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	191927564	191927564	C	G	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.865	p.E289Q	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	179	0	0	166	27	13.99	-	-	-	G	191927564	C	G	191927564	3	3	240	1	0	0	0	0	1	0	0	0	15358	835	29	2	1445	2	STAT4	2	191927564	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31364	191927564	51271809	756	19606										
DNAH7	0	genome.wustl.edu	37	chr2	196729727	196729727	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtattgtccagaaggcggtCataatacactcgaaggacct	10	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	196729727	196729727	C	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.6652	p.D2218H	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	44	0	0	37	16	30.19	-	-	-	G	196729727	C	G	196729727	3	3	240	1	0	0	0	0	1	0	0	0	4641	826	29	2	5522	2	DNAH7	2	196729727	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4802163	196729727	46469646	757	19607										
HECW2	0	genome.wustl.edu	37	chr2	197184224	197184224	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgatcttcttcatctgaatCaatatgaagcatggcattga	8	7	5	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197184224	197184224	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.1390	p.D464N	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	27	0	0	50	12	19.35	-	-	-	T	197184224	C	T	197184224	3	4	240	1	0	0	0	0	1	0	0	0	7094	826	29	2	3412	2	HECW2	2	197184224	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	454497	197184224	46015149	758	19608										
HECW2	0	genome.wustl.edu	37	chr2	197199240	197199240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaaaacagatttttatctCcgctgcaaagcaattggaga	7	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197199240	197199240	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.403	p.E135K	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	30	0	0	31	7	18.42	-	-	-	T	197199240	C	T	197199240	3	4	240	1	0	0	0	0	1	0	0	0	7094	864	30	2	4419	2	HECW2	2	197199240	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15016	197199240	46000133	759	19609										
CCDC150	0	genome.wustl.edu	37	chr2	197511131	197511131	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatcaacgctacagcttctGaaacattcacagtacttcag	5	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197511131	197511131	G	A	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	1.000	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	86	0	0	90	31	25.62	-	-	-	A	197511131	G	A	197511131	3	1	240	1	0	0	0	0	1	0	0	0	2810	1291	45	2	85	2	CCDC150	2	197511131	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	311891	197511131	45688242	760	19610										
CCDC150	0	genome.wustl.edu	37	chr2	197523537	197523537	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatgcagccattattgaaGaggaactgaagaccacaaaa	9	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197523537	197523537	G	A	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.598	p.E200K	1.000	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	111	0	0	73	52	41.6	-	-	-	A	197523537	G	A	197523537	3	1	240	1	0	0	0	0	1	0	0	0	2810	943	33	2	616	2	CCDC150	2	197523537	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12406	197523537	45675836	761	19611										
CCDC150	0	genome.wustl.edu	37	chr2	197538982	197538982	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggttttgaatgaccaattGactaaaaagtgttcagagtt	9	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197538982	197538982	G	C	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.1047	p.L349F	0.443	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	152	0	0	151	30	16.57	-	-	-	C	197538982	G	C	197538982	3	2	240	1	0	0	0	0	1	0	0	0	2810	1281	45	2	1085	2	CCDC150	2	197538982	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15445	197538982	45660391	762	19612										
PGAP1	0	genome.wustl.edu	37	chr2	197763089	197763089	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaggtcttaggcactgctGaactctaaaagaaaagaaaa	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197763089	197763089	G	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.812	p.S271L	1.000	pfam_PGAP1-like	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	69	0	0	60	10	14.29	-	-	-	A	197763089	G	A	197763089	3	1	240	1	0	0	0	0	1	0	0	0	11851	1294	45	2	2044	2	PGAP1	2	197763089	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	224107	197763089	45436284	763	19613										
PGAP1	0	genome.wustl.edu	37	chr2	197781290	197781290	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcaatgtcctctgcttttCtaagtgcaatggagccaata	8	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197781290	197781290	C	G	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.329	p.R110T	1.000	pfam_PGAP1-like	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	86	0	0	84	20	19.23	-	-	-	G	197781290	C	G	197781290	3	3	240	1	0	0	0	0	1	0	0	0	11851	913	32	2	2539	2	PGAP1	2	197781290	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18201	197781290	45418083	764	19614										
ANKRD44	0	genome.wustl.edu	37	chr2	197990733	197990733	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttgcattgacatcagctGagtgcttaatcaaaacctgt	7	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	197990733	197990733	G	A	SNP	ANKRD44	ENST00000328737	human	ensembl	69_37n	-1	known	missense	c.215	p.S72L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413	96	0	0	77	12	13.48	-	-	-	A	197990733	G	A	197990733	3	1	240	1	0	0	0	0	1	0	0	0	671	1294	45	2	2632	2	ANKRD44	2	197990733	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	209443	197990733	45208640	765	19615										
SF3B1	0	genome.wustl.edu	37	chr2	198270046	198270046	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaggttttaaaaatggaaGatttccagatggctggtcat	10	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	198270046	198270046	G	A	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.1390	p.L464F	1.000	NULL	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	55	0	0	44	22	33.33	-	-	-	A	198270046	G	A	198270046	3	1	240	1	0	0	0	0	1	0	0	0	14237	942	33	2	2588	2	SF3B1	2	198270046	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	279313	198270046	44929327	766	19616										
SF3B1	0	genome.wustl.edu	37	chr2	198273151	198273151	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attggtgtctttccaggggtCagaactggagtgcttccacc	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	198273151	198273151	C	G	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	silent	c.1059	p.L353	1.000	pfam_SF3b_su1	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	102	0	0	76	16	17.39	-	-	-	G	198273151	C	G	198273151	2	3	240	1	0	0	0	0	0	0	0	1	14237	813	29	2		2	SF3B1	2	198273151	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3105	198273151	44926222	767	19617										
HSPD1	0	genome.wustl.edu	37	chr2	198358088	198358088	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagagcttctccatcaacatCttcagcgattatgaccaaag	6	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	198358088	198358088	C	T	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	missense	c.829	p.D277N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	82	0	0	70	13	15.66	-	-	-	T	198358088	C	T	198358088	3	4	240	1	0	0	0	0	1	0	0	0	7482	913	32	2	916	2	HSPD1	2	198358088	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	84937	198358088	44841285	768	19618										
RFTN2	0	genome.wustl.edu	37	chr2	198436896	198436896	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagaaaggcggcactcctCaggcaggtgtctgctctctg	15	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	198436896	198436896	C	G	SNP	RFTN2	ENST00000295049	human	ensembl	69_37n	-1	known	missense	c.1342	p.E448Q	0.006	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	142	0	0	121	79	39.5	-	-	-	G	198436896	C	G	198436896	3	3	240	1	0	0	0	0	1	0	0	0	13342	835	29	2	167	2	RFTN2	2	198436896	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78808	198436896	44762477	769	19619										
PLCL1	0	genome.wustl.edu	37	chr2	198950526	198950526	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaattccagcggattgttCggaacaaagaactaaaactg	10	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	198950526	198950526	C	G	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.2285	p.S762W	0.717	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	62	0	0	78	16	17.02	-	-	-	G	198950526	C	G	198950526	3	3	240	1	0	0	0	0	1	0	0	0	12113	893	31	3	2291	3	PLCL1	2	198950526	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	513630	198950526	44248847	770	19620										
SATB2	0	genome.wustl.edu	37	chr2	200173558	200173558	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccttgactcctcctcataGatgacatccctctcatgctg	6	15	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	200173558	200173558	G	C	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.1665	p.I555M	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	73	0	0	64	19	22.89	-	-	-	C	200173558	G	C	200173558	3	2	240	1	0	0	0	0	1	0	0	0	13941	932	33	2	544	2	SATB2	2	200173558	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1223032	200173558	43025815	771	19621										
SATB2	0	genome.wustl.edu	37	chr2	200188564	200188564	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactttggcaaacagggcttGagacaccttggcccttttca	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	200188564	200188564	G	C	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.1504	p.Q502E	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	84	0	0	88	22	20	-	-	-	C	200188564	G	C	200188564	3	2	240	1	0	0	0	0	1	0	0	0	13941	1299	45	2	709	2	SATB2	2	200188564	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15006	200188564	43010809	772	19622										
SATB2	0	genome.wustl.edu	37	chr2	200193423	200193423	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaagcaagtttctcacctGaggggttcgggaggagctgg	17	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	200193423	200193423	G	A	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	nonsense	c.1384	p.Q462*	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	66	0	0	53	39	42.39	-	-	-	A	200193423	G	A	200193423	4	1	240	1	0	0	0	0	0	1	0	0	13941	1299	45	2	833	2	SATB2	2	200193423	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4859	200193423	43005950	773	19623										
NIF3L1	0	genome.wustl.edu	37	chr2	201756781	201756781	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcctttcttccttgaatGactttgcatccctctcgttt	4	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	201756781	201756781	G	A	SNP	NIF3L1	ENST00000409020	human	ensembl	69_37n	1	known	missense	c.115	p.D39N	1.000	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	-	no_errors	NIF3L1	HGNC	ENSG00000196290	89	0	0	92	30	24.59	-	-	-	A	201756781	G	A	201756781	3	1	240	1	0	0	0	0	1	0	0	0	10488	1290	45	2	117	2	NIF3L1	2	201756781	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1563358	201756781	41442592	774	19624										
FAM126B	0	genome.wustl.edu	37	chr2	201846308	201846308	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaggcaggctcaggtgtttCttcattggtgtcagctcaac	12	10	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	201846308	201846308	C	T	SNP	FAM126B	ENST00000418596	human	ensembl	69_37n	-1	known	silent	c.1278	p.K426	1.000	NULL	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744	86	0	0	84	25	22.94	-	-	-	T	201846308	C	T	201846308	2	4	240	1	0	0	0	0	0	0	0	1	5470	912	32	2		2	FAM126B	2	201846308	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89527	201846308	41353065	775	19625										
CASP10	0	genome.wustl.edu	37	chr2	202050503	202050503	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccctttcaggctggccatGaaatctcaaggtcaacattg	9	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202050503	202050503	G	A	SNP	CASP10	ENST00000286186	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	NULL	pfam_Pept_C14_cat,pfam_DED,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,prints_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400	17	0	0	19	4	17.39	-	-	-	A	202050503	G	A	202050503	3	1	240	1	0	0	0	0	1	0	0	0	2694	1290	45	2	5	2	CASP10	2	202050503	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204195	202050503	41148870	776	19626										
TRAK2	0	genome.wustl.edu	37	chr2	202254093	202254093	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttgctgaagaccagactCaaaaggttttgctgtcatga	10	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202254093	202254093	C	G	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.1327	p.E443Q	0.773	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	95	0	0	103	17	14.17	-	-	-	G	202254093	C	G	202254093	3	3	240	1	0	0	0	0	1	0	0	0	16546	835	29	2	1437	2	TRAK2	2	202254093	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	203590	202254093	40945280	777	19627										
TRAK2	0	genome.wustl.edu	37	chr2	202260101	202260101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaaagctcttcttggtatCgaatcagctcatcactcttc	7	11	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202260101	202260101	C	T	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.836	p.R279Q	0.999	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	119	1	0.83	92	19	17.12	-	-	-	T	202260101	C	T	202260101	3	4	240	1	0	0	0	0	1	0	0	0	16546	884	31	1	1944	1	TRAK2	2	202260101	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6008	202260101	40939272	778	19628										
ALS2CR11	0	genome.wustl.edu	37	chr2	202358579	202358579	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaattggaaaatctctctCatcagcttcgaagtgttttt	6	7	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202358579	202358579	C	T	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.2485	p.E829K	0.003	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	65	0	0	63	19	23.17	-	-	-	T	202358579	C	T	202358579	3	4	240	1	0	0	0	0	1	0	0	0	552	835	29	2	2985	2	ALS2CR11	2	202358579	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98478	202358579	40840794	779	19629										
ALS2	0	genome.wustl.edu	37	chr2	202569272	202569272	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaggacactctgagagatCtcctcaaaagtctgctggat	10	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202569272	202569272	C	T	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	silent	c.4743	p.E1581	1.000	pfam_VPS9,pfscan_VPS9	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	122	0	0	98	27	21.6	-	-	-	T	202569272	C	T	202569272	2	4	240	1	0	0	0	0	0	0	0	1	550	912	32	2		2	ALS2	2	202569272	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	210693	202569272	40630101	780	19630										
FZD7	0	genome.wustl.edu	37	chr2	202900866	202900866	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaggccttccgcgagcactGggagcgcacctggctcctgc	14	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	202900866	202900866	G	A	SNP	FZD7	ENST00000286201	human	ensembl	69_37n	1	known	nonsense	c.1496	p.W499*	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760	15	0	0	20	6	23.08	-	-	-	A	202900866	G	A	202900866	4	1	240	1	0	0	0	0	0	1	0	0	6184	1357	47	4	1498	4	FZD7	2	202900866	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	331594	202900866	40298507	781	19631										
ALS2CR8	0	genome.wustl.edu	37	chr2	203825996	203825996	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accgtggctactgtgtaagtGagactgaattagaaagtgtc	12	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	203825996	203825996	G	C	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	missense	c.679	p.E227Q	1.000	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	94	0	0	68	20	22.73	-	-	-	C	203825996	G	C	203825996	3	2	240	1	0	0	0	0	1	0	0	0	555	1291	45	2	701	2	ALS2CR8	2	203825996	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	925130	203825996	39373377	782	19632										
NBEAL1	0	genome.wustl.edu	37	chr2	203980744	203980744	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttggaagtgtcaagagtCtgacatggccgacctgcctg	12	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	203980744	203980744	C	G	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.2456	p.S819C	0.951	superfamily_ConA-like_lec_gl	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	106	0	0	105	31	22.79	-	-	-	G	203980744	C	G	203980744	3	3	240	1	0	0	0	0	1	0	0	0	10260	913	32	2	2518	2	NBEAL1	2	203980744	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	154748	203980744	39218629	783	19633										
NBEAL1	0	genome.wustl.edu	37	chr2	204009439	204009439	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgttctaagtcaatcaatCaaggaacagactgaaatcta	6	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204009439	204009439	C	G	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.4878	p.I1626M	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	156	0	0	143	34	19.21	-	-	-	G	204009439	C	G	204009439	3	3	240	1	0	0	0	0	1	0	0	0	10260	816	29	2	4996	2	NBEAL1	2	204009439	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28695	204009439	39189934	784	19634										
NBEAL1	0	genome.wustl.edu	37	chr2	204016301	204016301	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggaagctagtgccttgaGagataatctgggtgagttcc	14	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204016301	204016301	G	C	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.5489	p.R1830T	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	75	0	0	60	11	15.49	-	-	-	C	204016301	G	C	204016301	3	2	240	1	0	0	0	0	1	0	0	0	10260	942	33	2	5619	2	NBEAL1	2	204016301	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6862	204016301	39183072	785	19635										
ABI2	0	genome.wustl.edu	37	chr2	204255823	204255823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcgtacaacacctccaactCagaagccccctagtccccct	5	20	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204255823	204255823	C	G	SNP	ABI2	ENST00000295851	human	ensembl	69_37n	1	known	missense	c.535	p.Q179E	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443	60	0	0	32	15	31.91	-	-	-	G	204255823	C	G	204255823	3	3	240	1	0	0	0	0	1	0	0	0	89	827	29	2	531	2	ABI2	2	204255823	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	239522	204255823	38943550	786	19636										
RAPH1	0	genome.wustl.edu	37	chr2	204313535	204313535	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaaggtatttgatatattGagatttcttctggatttgtg	9	3	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204313535	204313535	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	69_37n	-1	known	nonsense	c.1594	p.Q532*	1.000	pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,prints_Paxillin,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	RAPH1	HGNC	ENSG00000173166	93	0	0	97	15	13.39	-	-	-	A	204313535	G	A	204313535	4	1	240	1	0	0	0	0	0	1	0	0	13133	1299	45	2	2337	2	RAPH1	2	204313535	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	57712	204313535	38885838	787	19637										
RAPH1	0	genome.wustl.edu	37	chr2	204326613	204326613	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttctctagggcaactctGatcttctcagctttcaattt	5	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204326613	204326613	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	69_37n	-1	known	silent	c.924	p.I308	1.000	superfamily_Kinase-like_dom	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,prints_Paxillin,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	RAPH1	HGNC	ENSG00000173166	210	0	0	211	42	16.6	-	-	-	A	204326613	G	A	204326613	2	1	240	1	0	0	0	0	0	0	0	1	13133	1280	45	2		2	RAPH1	2	204326613	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13078	204326613	38872760	788	19638										
RAPH1	0	genome.wustl.edu	37	chr2	204354534	204354534	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagattgctgagcagcctCatccatactcaaagaggcct	8	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	204354534	204354534	C	T	SNP	RAPH1	ENST00000374493	human	ensembl	69_37n	-1	known	missense	c.505	p.E169K	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,prints_Paxillin,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	RAPH1	HGNC	ENSG00000173166	136	0	0	120	23	16.08	-	-	-	T	204354534	C	T	204354534	3	4	240	1	0	0	0	0	1	0	0	0	13133	835	29	2	3462	2	RAPH1	2	204354534	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27921	204354534	38844839	789	19639										
INO80D	0	genome.wustl.edu	37	chr2	206921045	206921045	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctttcatgaggatccggtCagtcctgggtgggtccacag	15	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	206921045	206921045	C	A	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	missense	c.841	p.D281Y	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	124	0	0	120	28	18.92	-	-	-	A	206921045	C	A	206921045	3	1	240	1	0	0	0	0	1	0	0	0	7803	826	29	2	2274	2	INO80D	2	206921045	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2566511	206921045	36278328	790	19640										
MDH1B	0	genome.wustl.edu	37	chr2	207619974	207619974	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaggcagtcctccagagtGaacacctccttgttggtgct	12	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	207619974	207619974	G	T	SNP	MDH1B	ENST00000374412	human	ensembl	69_37n	-1	known	missense	c.669	p.F223L	0.001	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400	46	0	0	54	13	19.4	-	-	-	T	207619974	G	T	207619974	3	4	240	1	0	0	0	0	1	0	0	0	9480	1281	45	2	919	2	MDH1B	2	207619974	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	698929	207619974	35579399	791	19641										
FASTKD2	0	genome.wustl.edu	37	chr2	207632006	207632006	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caattgccaaaagactgtctGatgaccagaagcgctttgaa	9	9	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	207632006	207632006	G	A	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.589	p.D197N	0.002	NULL	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	34	0	0	27	28	50.91	-	-	-	A	207632006	G	A	207632006	3	1	240	1	0	0	0	0	1	0	0	0	5732	1290	45	2	591	2	FASTKD2	2	207632006	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12032	207632006	35567367	792	19642										
CCNYL1	0	genome.wustl.edu	37	chr2	208589556	208589556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcaaacccttctgaccatCcaagggcaagcacaattttc	6	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	208589556	208589556	C	T	SNP	CCNYL1	ENST00000295414	human	ensembl	69_37n	1	known	missense	c.253	p.P85S	1.000	pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNYL1	HGNC	ENSG00000163249	141	0	0	87	63	42	-	-	-	T	208589556	C	T	208589556	3	4	240	1	0	0	0	0	1	0	0	0	2966	855	30	2	259	2	CCNYL1	2	208589556	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	957550	208589556	34609817	793	19643										
CCNYL1	0	genome.wustl.edu	37	chr2	208589589	208589589	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caattttcctgagcaaatctCaaacggatggtaagacaata	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	208589589	208589589	C	G	SNP	CCNYL1	ENST00000452312	human	ensembl	69_37n	1	known	nonsense	c.83	p.S28*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCNYL1	HGNC	ENSG00000163249	110	1	0.9	111	17	13.28	-	-	-	G	208589589	C	G	208589589	4	3	240	1	0	0	0	0	0	1	0	0	2966	827	29	2	292	2	CCNYL1	2	208589589	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33	208589589	34609784	794	19644										
PLEKHM3	0	genome.wustl.edu	37	chr2	208866250	208866250	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttcagggacttcctggatCccataaacctctgcctgctg	9	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	208866250	208866250	C	A	SNP	PLEKHM3	ENST00000427836	human	ensembl	69_37n	-1	known	silent	c.114	p.G38	0.850	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385	60	0	0	82	17	17.17	-	-	-	A	208866250	C	A	208866250	2	1	240	1	0	0	0	0	0	0	0	1	12156	842	30	2		2	PLEKHM3	2	208866250	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	276661	208866250	34333123	795	19645										
CRYGB	0	genome.wustl.edu	37	chr2	209010698	209010698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggcagtcagtggtgcattCgtagctgcggccctggaagg	18	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	209010698	209010698	C	T	SNP	CRYGB	ENST00000260988	human	ensembl	69_37n	-1	known	missense	c.52	p.E18K	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGB	HGNC	ENSG00000182187	83	0	0	53	30	36.14	-	-	-	T	209010698	C	T	209010698	3	4	240	1	0	0	0	0	1	0	0	0	3945	893	31	1	483	1	CRYGB	2	209010698	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	144448	209010698	34188675	796	19646										
IDH1	0	genome.wustl.edu	37	chr2	209103936	209103936	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgctctgtgggctaaccctCtggtccaggcaaaaatggaa	11	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	209103936	209103936	C	G	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.1013	p.R338T	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	95	0	0	81	24	22.86	-	-	-	G	209103936	C	G	209103936	3	3	240	1	0	0	0	0	1	0	0	0	7548	913	32	2	239	2	IDH1	2	209103936	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	93238	209103936	34095437	797	19647										
IDH1	0	genome.wustl.edu	37	chr2	209113264	209113264	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacttgaactcctcaaccctCttctcatcaggagtgatagt	6	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	209113264	209113264	C	G	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.243	p.K81N	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	139	0	0	165	28	14.51	-	-	-	G	209113264	C	G	209113264	3	3	240	1	0	0	0	0	1	0	0	0	7548	912	32	2	1029	2	IDH1	2	209113264	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9328	209113264	34086109	798	19648										
PIKFYVE	0	genome.wustl.edu	37	chr2	209163367	209163367	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgtttttatttccagatCagccagcattactaacctgt	5	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	209163367	209163367	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.914	p.S305L	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	169	0	0	159	34	17.62	-	-	-	T	209163367	C	T	209163367	3	4	240	1	0	0	0	0	1	0	0	0	11998	838	29	2	940	2	PIKFYVE	2	209163367	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	50103	209163367	34036006	799	19649										
MAP2	0	genome.wustl.edu	37	chr2	210558743	210558743	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccatgcataaaaatggtGacaaggagtttcaaacagga	9	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	210558743	210558743	G	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.1849	p.D617N	0.965	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	37	0	0	29	9	23.68	-	-	-	A	210558743	G	A	210558743	3	1	240	1	0	0	0	0	1	0	0	0	9306	1290	45	2	1863	2	MAP2	2	210558743	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1395376	210558743	32640630	800	19650										
CPS1	0	genome.wustl.edu	37	chr2	211452781	211452781	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctggtttttaaaatggcaGgatgtcaaagtgtacggcaa	11	6	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	211452781	211452781	G	A	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	splice_site	c.640-1	e8-1	1.000	-	-	-	no_errors	CPS1	HGNC	ENSG00000021826	78	0	0	73	20	21.51	-	-	-	A	211452781	G	A	211452781	5	1	240	1	0	0	0	0	0	0	1	0	3853	1014	35	4	669	4	CPS1	2	211452781	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	894038	211452781	31746592	801	19651										
CPS1	0	genome.wustl.edu	37	chr2	211512593	211512593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtattttccaggcatgtGgtggctgcatcatatcagtt	11	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	211512593	211512593	G	A	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.3166	p.G1056S	0.629	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	61	0	0	55	14	20.29	-	-	-	A	211512593	G	A	211512593	3	1	240	1	0	0	0	0	1	0	0	0	3853	1348	47	4	3272	4	CPS1	2	211512593	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59812	211512593	31686780	802	19652										
ERBB4	0	genome.wustl.edu	37	chr2	212251629	212251629	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaccttcctcatccagctCtcctcgtgggctccgttctg	8	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	212251629	212251629	C	G	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.3430	p.E1144Q	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	129	0	0	142	25	14.97	-	-	-	G	212251629	C	G	212251629	3	3	240	1	0	0	0	0	1	0	0	0	5246	922	32	2	504	2	ERBB4	2	212251629	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	739036	212251629	30947744	803	19653										
ERBB4	0	genome.wustl.edu	37	chr2	212652755	212652755	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aataattctacttacatcctGaactaccatttgttgacaca	3	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	212652755	212652755	G	A	SNP	ERBB4	ENST00000260943	human	ensembl	69_37n	-1	novel	nonsense	c.550	p.Q184*	0.828	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt,superfamily_Kinase-like_dom,smart_Furin_repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERBB4	HGNC	ENSG00000178568	68	0	0	74	12	13.95	-	-	-	A	212652755	G	A	212652755	4	1	240	1	0	0	0	0	0	1	0	0	5246	1294	45	2	3475	2	ERBB4	2	212652755	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	401126	212652755	30546618	804	19654										
BARD1	0	genome.wustl.edu	37	chr2	215610501	215610501	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaattactgcaagctcactGagcattttctgttgttctga	8	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	215610501	215610501	G	A	SNP	BARD1	ENST00000260947	human	ensembl	69_37n	-1	known	silent	c.1755	p.L585	0.218	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376	115	0	0	123	30	19.61	-	-	-	A	215610501	G	A	215610501	2	1	240	1	0	0	0	0	0	0	0	1	1316	1277	45	2		2	BARD1	2	215610501	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2957746	215610501	27588872	805	19655										
ABCA12	0	genome.wustl.edu	37	chr2	215868942	215868942	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggactcaccgagttcatCtatctgtttcaatagttcaa	6	9	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	215868942	215868942	C	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.2674	p.D892Y	0.996	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	95	0	0	80	24	23.08	-	-	-	A	215868942	C	A	215868942	3	1	240	1	0	0	0	0	1	0	0	0	30	913	32	2	5249	2	ABCA12	2	215868942	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	258441	215868942	27330431	806	19656										
TMEM169	0	genome.wustl.edu	37	chr2	216960800	216960800	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatggggaatccacaatgggGcacaggaaaaagaagaggaa	15	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	216960800	216960800	G	T	SNP	TMEM169	ENST00000295658	human	ensembl	69_37n	1	known	silent	c.114	p.G38	0.983	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449	44	0	0	59	11	15.71	-	-	-	T	216960800	G	T	216960800	2	4	240	1	0	0	0	0	0	0	0	1	16179	1190	42	4		4	TMEM169	2	216960800	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1091858	216960800	26238573	807	19657										
SMARCAL1	0	genome.wustl.edu	37	chr2	217347508	217347508	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctattccagaagtcctttgaGaaagaaggaagtgatatgga	11	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	217347508	217347508	G	C	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.2673	p.E891D	0.996	NULL	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	73	0	0	58	11	15.94	-	-	-	C	217347508	G	C	217347508	3	2	240	1	0	0	0	0	1	0	0	0	14862	933	33	2	2735	2	SMARCAL1	2	217347508	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	386708	217347508	25851865	808	19658										
ARPC2	0	genome.wustl.edu	37	chr2	219114175	219114175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactacctgcactaccacatCaagtgctctaaggtgagggg	11	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219114175	219114175	C	G	SNP	ARPC2	ENST00000295685	human	ensembl	69_37n	1	known	missense	c.765	p.I255M	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466	87	0	0	88	19	17.59	-	-	-	G	219114175	C	G	219114175	3	3	240	1	0	0	0	0	1	0	0	0	975	816	29	2	795	2	ARPC2	2	219114175	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1766667	219114175	24085198	809	19659										
PNKD	0	genome.wustl.edu	37	chr2	219137293	219137293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacatctccccacccgtagGgccatcggcttcccttgtgg	10	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219137293	219137293	G	T	SNP	PNKD	ENST00000248451	human	ensembl	69_37n	1	known	missense	c.237	p.W79C	1.000	NULL	NULL	-	no_errors	PNKD	HGNC	ENSG00000127838	43	0	0	50	16	24.24	-	-	-	T	219137293	G	T	219137293	3	4	240	1	0	0	0	0	1	0	0	0	12220	1246	43	4	247	4	PNKD	2	219137293	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23118	219137293	24062080	810	19660										
C2orf62	0	genome.wustl.edu	37	chr2	219227513	219227513	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaatcaagggcttcatctCagaggctgccaacctggtgc	10	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219227513	219227513	C	G	SNP	C2orf62	ENST00000289388	human	ensembl	69_37n	1	known	nonsense	c.518	p.S173*	0.988	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428	49	0	0	65	11	14.47	-	-	-	G	219227513	C	G	219227513	4	3	240	1	0	0	0	0	0	1	0	0	2201	838	29	2	540	2	C2orf62	2	219227513	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	90220	219227513	23971860	811	19661										
VIL1	0	genome.wustl.edu	37	chr2	219297647	219297647	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacctcatcttatgtccatCttcaagggacgcatggtggt	9	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219297647	219297647	C	G	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	missense	c.1473	p.I491M	1.000	smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	65	0	0	79	16	16.84	-	-	-	G	219297647	C	G	219297647	3	3	240	1	0	0	0	0	1	0	0	0	17261	903	32	2	1519	2	VIL1	2	219297647	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70134	219297647	23901726	812	19662										
USP37	0	genome.wustl.edu	37	chr2	219411690	219411690	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttgaagtagatgtcaaaGaaggaatcgtccgagctatt	12	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219411690	219411690	G	C	SNP	USP37	ENST00000258399	human	ensembl	69_37n	-1	known	missense	c.554	p.S185C	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP37	HGNC	ENSG00000135913	128	0	0	107	28	20.74	-	-	-	C	219411690	G	C	219411690	3	2	240	1	0	0	0	0	1	0	0	0	17165	942	33	2	2465	2	USP37	2	219411690	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	114043	219411690	23787683	813	19663										
RQCD1	0	genome.wustl.edu	37	chr2	219449345	219449345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttccaggtcagcgtttCtcgcagcacacatcccactt	6	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219449345	219449345	C	T	SNP	RQCD1	ENST00000509807	human	ensembl	69_37n	1	known	missense	c.331	p.L111F	1.000	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580	139	0	0	135	35	20.59	-	-	-	T	219449345	C	T	219449345	3	4	240	1	0	0	0	0	1	0	0	0	13756	913	32	2	345	2	RQCD1	2	219449345	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37655	219449345	23750028	814	19664										
BCS1L	0	genome.wustl.edu	37	chr2	219527991	219527991	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccttagctgagaactttgCagaacatgtccttcgagcta	8	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219527991	219527991	C	G	SNP	BCS1L	ENST00000359273	human	ensembl	69_37n	1	known	missense	c.1142	p.A381G	1.000	NULL	pfam_BCS1_N,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582	52	0	0	75	16	17.58	-	-	-	G	219527991	C	G	219527991	3	3	240	1	0	0	0	0	1	0	0	0	1393	710	25	4	1168	4	BCS1L	2	219527991	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78646	219527991	23671382	815	19665										
FEV	0	genome.wustl.edu	37	chr2	219846886	219846886	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgggtccgtgagcttgaactCgccgtgaccgccctcccacg	12	17	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	219846886	219846886	C	G	SNP	FEV	ENST00000295727	human	ensembl	69_37n	-1	known	missense	c.220	p.E74Q	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FEV	HGNC	ENSG00000163497	37	0	0	21	10	32.26	-	-	-	G	219846886	C	G	219846886	3	3	240	1	0	0	0	0	1	0	0	0	5868	893	31	3	500	3	FEV	2	219846886	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	318895	219846886	23352487	816	19666										
ABCB6	0	genome.wustl.edu	37	chr2	220077977	220077977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcacccatcggcatagctGaagtgcacgttctcaaactc	7	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	220077977	220077977	G	A	SNP	ABCB6	ENST00000295750	human	ensembl	69_37n	-1	novel	missense	c.1334	p.S445L	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCB6	HGNC	ENSG00000115657	90	0	0	98	26	20.97	-	-	-	A	220077977	G	A	220077977	3	1	240	1	0	0	0	0	1	0	0	0	45	1281	45	2	769	2	ABCB6	2	220077977	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	231091	220077977	23121396	817	19667										
ABCB6	0	genome.wustl.edu	37	chr2	220078588	220078588	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaagtatgcgcaaagcaggGagccggcgaggagcccgagc	16	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	220078588	220078588	G	C	SNP	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	missense	c.1538	p.S513C	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	37	0	0	46	10	17.86	-	-	-	C	220078588	G	C	220078588	3	2	240	1	0	0	0	0	1	0	0	0	45	1174	41	2	1034	2	ABCB6	2	220078588	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	611	220078588	23120785	818	19668										
ANKZF1	0	genome.wustl.edu	37	chr2	220098854	220098854	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatcttttcttttatggcaGaagaagaccctcgggaagca	10	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	220098854	220098854	G	A	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	1	known	splice_site	c.1049-1	e8-1	1.000	-	-	-	no_errors	ANKZF1	HGNC	ENSG00000163516	34	0	0	47	10	17.54	-	-	-	A	220098854	G	A	220098854	5	1	240	1	0	0	0	0	0	0	1	0	692	956	33	2	1078	2	ANKZF1	2	220098854	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	20266	220098854	23100519	819	19669										
PTPRN	0	genome.wustl.edu	37	chr2	220161522	220161522	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagggctgctctccaccttCagttttatgcgggcatggtc	12	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	220161522	220161522	C	T	SNP	PTPRN	ENST00000295718	human	ensembl	69_37n	-1	known	silent	c.2259	p.L753	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356	81	0	0	107	25	18.94	-	-	-	T	220161522	C	T	220161522	2	4	240	1	0	0	0	0	0	0	0	1	12890	813	29	2		2	PTPRN	2	220161522	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62668	220161522	23037851	820	19670										
SLC4A3	0	genome.wustl.edu	37	chr2	220501566	220501566	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctcatctcactcattttCatctacgagaccttctacaa	2	13	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	220501566	220501566	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	silent	c.2586	p.F862	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	87	0	0	69	18	20.69	-	-	-	T	220501566	C	T	220501566	2	4	240	1	0	0	0	0	0	0	0	1	14744	825	29	2		2	SLC4A3	2	220501566	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	340044	220501566	22697807	821	19671										
EPHA4	0	genome.wustl.edu	37	chr2	222428888	222428888	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgctctttgtcgttgtctGattcatagtagtacaggtta	9	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	222428888	222428888	G	C	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	nonsense	c.386	p.S129*	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	101	0	0	98	23	19.01	-	-	-	C	222428888	G	C	222428888	4	2	240	1	0	0	0	0	0	1	0	0	5206	1294	45	2	2634	2	EPHA4	2	222428888	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1927322	222428888	20770485	822	19672										
FARSB	0	genome.wustl.edu	37	chr2	223507655	223507655	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggacgtcaattttgtaaaGaacaacatcagaggctcctg	10	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	223507655	223507655	G	T	SNP	FARSB	ENST00000281828	human	ensembl	69_37n	-1	known	missense	c.184	p.L62I	1.000	superfamily_DNA-bd_dom_put,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120	124	0	0	91	21	18.58	-	-	-	T	223507655	G	T	223507655	3	4	240	1	0	0	0	0	1	0	0	0	5726	942	33	2	1645	2	FARSB	2	223507655	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1078767	223507655	19691718	823	19673										
IRS1	0	genome.wustl.edu	37	chr2	227662668	227662668	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgctgcgagggcggaactCatcactcatggcccgcatgg	13	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	227662668	227662668	C	T	SNP	IRS1	ENST00000305123	human	ensembl	69_37n	-1	known	missense	c.787	p.E263K	1.000	prints_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	48	0	0	49	11	18.33	-	-	-	T	227662668	C	T	227662668	3	4	240	1	0	0	0	0	1	0	0	0	7894	835	29	2	2945	2	IRS1	2	227662668	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4155013	227662668	15536705	824	19674										
SPHKAP	0	genome.wustl.edu	37	chr2	228860376	228860376	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctggcttctgtggaggcttCagcctctggtacatctctgg	12	11	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	228860376	228860376	C	G	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4483	p.E1495Q	0.817	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	93	0	0	83	22	20.95	-	-	-	G	228860376	C	G	228860376	3	3	240	1	0	0	0	0	1	0	0	0	15139	835	29	2	639	2	SPHKAP	2	228860376	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1197708	228860376	14338997	825	19675										
SPHKAP	0	genome.wustl.edu	37	chr2	228884192	228884192	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctggctgtggggcagcatCactgccatctggactctgaa	13	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	228884192	228884192	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.1378	p.D460N	0.721	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	61	0	0	55	16	22.54	-	-	-	T	228884192	C	T	228884192	3	4	240	1	0	0	0	0	1	0	0	0	15139	826	29	2	3748	2	SPHKAP	2	228884192	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23816	228884192	14315181	826	19676										
TRIP12	0	genome.wustl.edu	37	chr2	230652275	230652275	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgagaatcagactggttGatttctgggttggtatcaag	12	5	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	230652275	230652275	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	silent	c.4716	p.I1572	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	168	0	0	104	75	41.9	-	-	-	A	230652275	G	A	230652275	2	1	240	1	0	0	0	0	0	0	0	1	16652	1280	45	2		2	TRIP12	2	230652275	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1768083	230652275	12547098	827	19677										
TRIP12	0	genome.wustl.edu	37	chr2	230679862	230679862	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactacaacagcagaagatcGaggaagtgcttccatcatgt	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	230679862	230679862	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	nonsense	c.1540	p.R514*	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	69	0	0	55	12	17.91	-	-	-	A	230679862	G	A	230679862	4	1	240	1	0	0	0	0	0	1	0	0	16652	1066	37	1	4566	1	TRIP12	2	230679862	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27587	230679862	12519511	828	19678										
TRIP12	0	genome.wustl.edu	37	chr2	230723707	230723707	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaacgcctggccttgttctGatcttttccttgtttcactc	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	230723707	230723707	G	T	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.682	p.Q228K	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	152	0	0	164	24	12.7	-	-	-	T	230723707	G	T	230723707	3	4	240	1	0	0	0	0	1	0	0	0	16652	1299	45	2	5452	2	TRIP12	2	230723707	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	43845	230723707	12475666	829	19679										
SLC16A14	0	genome.wustl.edu	37	chr2	230911083	230911083	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagggtctcctcgttcccGagcccaccatccttctcttc	7	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	230911083	230911083	G	A	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	60	0	0	40	44	52.38	-	-	-	A	230911083	G	A	230911083	2	1	240	1	0	0	0	0	0	0	0	1	14496	1045	37	1		1	SLC16A14	2	230911083	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	187376	230911083	12288290	830	19680										
SP110	0	genome.wustl.edu	37	chr2	231067385	231067385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgagtcatctttcttttGaggaacctgatccacccttt	7	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	231067385	231067385	G	C	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.958	p.Q320E	0.000	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	184	0	0	210	48	18.6	-	-	-	C	231067385	G	C	231067385	3	2	240	1	0	0	0	0	1	0	0	0	15050	1299	45	2	1291	2	SP110	2	231067385	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	156302	231067385	12131988	831	19681										
PSMD1	0	genome.wustl.edu	37	chr2	232035373	232035373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatggcccaaaaatcgagGaggaggaacaagagccagaa	12	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	232035373	232035373	G	A	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.2809	p.E937K	1.000	pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	89	0	0	112	17	13.18	-	-	-	A	232035373	G	A	232035373	3	1	240	1	0	0	0	0	1	0	0	0	12772	1175	41	2	2903	2	PSMD1	2	232035373	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	967988	232035373	11164000	832	19682										
NCL	0	genome.wustl.edu	37	chr2	232319972	232319972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgcctcctcggaagcctCctcgccctacaggaggaagg	11	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	232319972	232319972	C	T	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.2063	p.G688E	0.989	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	113	0	0	113	22	16.3	-	-	-	T	232319972	C	T	232319972	3	4	240	1	0	0	0	0	1	0	0	0	10298	855	30	2	73	2	NCL	2	232319972	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	284599	232319972	10879401	833	19683										
NCL	0	genome.wustl.edu	37	chr2	232320147	232320147	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcctctgccaccaaatcctCctcggcctcctctaccacca	5	21	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	232320147	232320147	C	A	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.2021	p.G674V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	122	1	0.81	110	18	14.06	-	-	-	A	232320147	C	A	232320147	3	1	240	1	0	0	0	0	1	0	0	0	10298	855	30	2	119	2	NCL	2	232320147	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175	232320147	10879226	834	19684										
NMUR1	0	genome.wustl.edu	37	chr2	232393432	232393432	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtccgacacggccaggctGaagaggtagtagttggtagg	17	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	232393432	232393432	G	T	SNP	NMUR1	ENST00000305141	human	ensembl	69_37n	-1	known	missense	c.300	p.F100L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMUR1	HGNC	ENSG00000171596	42	0	0	42	10	19.23	-	-	-	T	232393432	G	T	232393432	3	4	240	1	0	0	0	0	1	0	0	0	10578	1281	45	2	988	2	NMUR1	2	232393432	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73285	232393432	10805941	835	19685										
NMUR1	0	genome.wustl.edu	37	chr2	232393706	232393706	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaggtctccagggaggacaGagcaattgaggcagagagga	16	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	232393706	232393706	G	C	SNP	NMUR1	ENST00000305141	human	ensembl	69_37n	-1	known	missense	c.26	p.S9C	0.927	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMUR1	HGNC	ENSG00000171596	31	0	0	28	5	15.15	-	-	-	C	232393706	G	C	232393706	3	2	240	1	0	0	0	0	1	0	0	0	10578	942	33	2	1262	2	NMUR1	2	232393706	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	274	232393706	10805667	836	19686										
KCNJ13	0	genome.wustl.edu	37	chr2	233635830	233635830	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctagttccagatcaccattCatctcagccagaacatacca	4	14	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	233635830	233635830	C	A	SNP	KCNJ13	ENST00000444142	human	ensembl	69_37n	-1	putative	nonsense	c.145	p.E49*	1.000	pfam_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir_Cr2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNJ13	HGNC	ENSG00000115474	157	0	0	167	38	18.54	-	-	-	A	233635830	C	A	233635830	4	1	240	1	0	0	0	0	0	1	0	0	8101	826	29	2	847	2	KCNJ13	2	233635830	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1242124	233635830	9563543	837	19687										
DGKD	0	genome.wustl.edu	37	chr2	234354333	234354333	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgagtactgggctggggctCagcctgcgatgacgacaccc	14	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234354333	234354333	C	T	SNP	DGKD	ENST00000430834	human	ensembl	69_37n	1	known	nonsense	c.241	p.Q81*	0.919	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DGKD	HGNC	ENSG00000077044	44	0	0	39	6	13.33	-	-	-	T	234354333	C	T	234354333	4	4	240	1	0	0	0	0	0	1	0	0	4503	838	29	2	1325	2	DGKD	2	234354333	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	718503	234354333	8845040	838	19688										
USP40	0	genome.wustl.edu	37	chr2	234433206	234433206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcacacagtgtcagttcatCccctagaaagagatcaccag	7	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234433206	234433206	C	T	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	missense	c.1846	p.D616N	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC	ENSG00000085982	114	1	0.87	106	36	25.35	-	-	-	T	234433206	C	T	234433206	3	4	240	1	0	0	0	0	1	0	0	0	17169	855	30	2	1969	2	USP40	2	234433206	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78873	234433206	8766167	839	19689										
UGT1A8	0	genome.wustl.edu	37	chr2	234527048	234527048	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatgccctagaaatagcctCtgaaattctccaaacacctg	5	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234527048	234527048	C	G	SNP	UGT1A8	ENST00000373450	human	ensembl	69_37n	1	known	missense	c.695	p.S232C	0.606	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366	191	0	0	125	33	20.89	-	-	-	G	234527048	C	G	234527048	3	3	240	1	0	0	0	0	1	0	0	0	17048	913	32	2	697	2	UGT1A8	2	234527048	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	93842	234527048	8672325	840	19690										
UGT1A6	0	genome.wustl.edu	37	chr2	234601797	234601797	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggatatagttgaggttctCagtgaccggggtcatgagat	14	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234601797	234601797	C	A	SNP	UGT1A6	ENST00000305139	human	ensembl	69_37n	1	known	silent	c.147	p.L49	0.001	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165	61	0	0	75	10	11.76	-	-	-	A	234601797	C	A	234601797	2	1	240	1	0	0	0	0	0	0	0	1	17046	813	29	2		2	UGT1A6	2	234601797	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	74749	234601797	8597576	841	19691										
UGT1A3	0	genome.wustl.edu	37	chr2	234638624	234638624	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcatcaactgtgccaacagGaagccactatctcaggtctg	10	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234638624	234638624	G	C	SNP	UGT1A3	ENST00000482026	human	ensembl	69_37n	1	known	missense	c.852	p.R284S	0.057	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	87	0	0	101	18	11.54	-	-	-	C	234638624	G	C	234638624	3	2	240	1	0	0	0	0	1	0	0	0	17043	1165	41	2	854	2	UGT1A3	2	234638624	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	36827	234638624	8560749	842	19692										
DNAJB3	0	genome.wustl.edu	37	chr2	234652393	234652393	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatcgcgtttcttggcgtccGacaacacctcgtaggcctcg	10	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234652393	234652393	G	A	SNP	DNAJB3	ENST00000449667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	32	0	0	30	10	25	-	-	-	A	234652393	G	A	234652393	1	1	240	0	1	0	0	0	0	0	0	0	4656	1059	37	1		1	DNAJB3	2	234652393	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13769	234652393	8546980	843	19693										
TRPM8	0	genome.wustl.edu	37	chr2	234858712	234858712	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctgacatcttctgccgtCaaggagaagctggtgcgctt	12	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234858712	234858712	C	G	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	silent	c.1062	p.V354	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	66	0	0	79	14	15.05	-	-	-	G	234858712	C	G	234858712	2	3	240	1	0	0	0	0	0	0	0	1	16688	813	29	2		2	TRPM8	2	234858712	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	206319	234858712	8340661	844	19694										
TRPM8	0	genome.wustl.edu	37	chr2	234878345	234878345	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtttccctgtagaattttCtttctaagcaatggtatgga	8	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	234878345	234878345	C	G	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.2032	p.L678V	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	133	1	0.74	106	35	24.82	-	-	-	G	234878345	C	G	234878345	3	3	240	1	0	0	0	0	1	0	0	0	16688	913	32	2	2090	2	TRPM8	2	234878345	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19633	234878345	8321028	845	19695										
SH3BP4	0	genome.wustl.edu	37	chr2	235949651	235949651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgaagttctccaagggcGaccatctctacgtcttggac	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	235949651	235949651	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.238	p.D80N	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	69	0	0	85	18	17.48	-	-	-	A	235949651	G	A	235949651	3	1	240	1	0	0	0	0	1	0	0	0	14334	1058	37	1	244	1	SH3BP4	2	235949651	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1071306	235949651	7249722	846	19696										
AGAP1	0	genome.wustl.edu	37	chr2	236839416	236839416	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttattcctagggaatgtCactagtgcatctgggtctca	10	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	236839416	236839416	C	A	SNP	AGAP1	ENST00000448025	human	ensembl	69_37n	1	novel	missense	c.232	p.H78N	1.000	NULL	pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AGAP1	HGNC	ENSG00000157985	51	0	0	62	15	19.23	-	-	-	A	236839416	C	A	236839416	3	1	240	1	0	0	0	0	1	0	0	0	366	813	29	2	1378	2	AGAP1	2	236839416	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	889765	236839416	6359957	847	19697										
CXCR7	0	genome.wustl.edu	37	chr2	237489207	237489207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgtggtggacacggtgatGtgtcccaacatgcccaacaa	11	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	237489207	237489207	G	T	SNP	CXCR7	ENST00000272928	human	ensembl	69_37n	1	known	missense	c.99	p.M33I	0.670	prints_RDC1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Frt_met_rcpt	-	no_errors	CXCR7	HGNC	ENSG00000144476	64	0	0	78	13	14.29	-	-	-	T	237489207	G	T	237489207	3	4	240	1	0	0	0	0	1	0	0	0	4127	1377	48	4	101	4	CXCR7	2	237489207	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	649791	237489207	5710166	848	19698										
COL6A3	0	genome.wustl.edu	37	chr2	238303764	238303764	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacatcatatagaaactctcGaacaagttggaaatgttcct	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	238303764	238303764	G	C	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.175	p.R59G	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	24	0	0	26	6	18.75	-	-	-	C	238303764	G	C	238303764	3	2	240	1	0	0	0	0	1	0	0	0	3731	1066	37	3	9573	3	COL6A3	2	238303764	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	814557	238303764	4895609	849	19699										
ILKAP	0	genome.wustl.edu	37	chr2	239103487	239103487	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggaggtcatcaaagagcAggggtcctttctgagcttct	14	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	239103487	239103487	A	C	SNP	ILKAP	ENST00000254654	human	ensembl	69_37n	-1	known	missense	c.80	p.L27R	0.906	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	ILKAP	HGNC	ENSG00000132323	51	0	0	47	27	36.49	-	-	-	C	239103487	A	C	239103487	3	2	240	1	0	0	0	0	1	0	0	0	7768	188	7	5	1142	5	ILKAP	2	239103487	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	799723	239103487	4095886	850	19700										
MYEOV2	0	genome.wustl.edu	37	chr2	241070506	241070506	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaaaaagatcttcaaaatCtagggaaataagcaaaacca	5	7	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	241070506	241070506	C	G	SNP	MYEOV2	ENST00000307266	human	ensembl	69_37n	-1	known	splice_site	c.230-1	e3-1	1.000	-	-	-	no_errors	MYEOV2	HGNC	ENSG00000172428	38	0	0	33	10	23.26	-	-	-	G	241070506	C	G	241070506	5	3	240	1	0	0	0	0	0	0	1	0	10098	927	32	2	545	2	MYEOV2	2	241070506	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1967019	241070506	2128867	851	19701										
RNPEPL1	0	genome.wustl.edu	37	chr2	241516344	241516344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccgcatccgctggctgcaGattgtggtccgcaacgacta	11	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	241516344	241516344	G	C	SNP	RNPEPL1	ENST00000270357	human	ensembl	69_37n	1	known	missense	c.1128	p.Q376H	1.000	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327	36	0	0	40	12	23.08	-	-	-	C	241516344	G	C	241516344	3	2	240	1	0	0	0	0	1	0	0	0	13596	933	33	2	1158	2	RNPEPL1	2	241516344	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	445838	241516344	1683029	852	19702										
KIF1A	0	genome.wustl.edu	37	chr2	241722477	241722477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaccatttcagccagggcgGagatgaccttgcccagggtg	13	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	241722477	241722477	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.848	p.S283F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	84	0	0	102	17	14.29	-	-	-	A	241722477	G	A	241722477	3	1	240	1	0	0	0	0	1	0	0	0	8335	1174	41	2	4380	2	KIF1A	2	241722477	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	206133	241722477	1476896	853	19703										
SNED1	0	genome.wustl.edu	37	chr2	241991479	241991479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagccagactcgtgtgcctCtggcccctgtcacaacggcg	12	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	241991479	241991479	C	G	SNP	SNED1	ENST00000310397	human	ensembl	69_37n	1	known	missense	c.1874	p.S625C	0.999	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3,superfamily_Complement_control_module,smart_Nidogen_extracell_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	44	0	0	36	10	21.74	-	-	-	G	241991479	C	G	241991479	3	3	240	1	0	0	0	0	1	0	0	0	14934	913	32	2	1928	2	SNED1	2	241991479	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	269002	241991479	1207894	854	19704										
SNED1	0	genome.wustl.edu	37	chr2	241991819	241991819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgaatgggggcacctgcGaggaccgggacacggatttc	17	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	241991819	241991819	G	A	SNP	SNED1	ENST00000310397	human	ensembl	69_37n	1	known	missense	c.2017	p.E673K	0.192	smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3,superfamily_Complement_control_module,smart_Nidogen_extracell_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	37	0	0	37	10	21.28	-	-	-	A	241991819	G	A	241991819	3	1	240	1	0	0	0	0	1	0	0	0	14934	1059	37	1	2075	1	SNED1	2	241991819	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	340	241991819	1207554	855	19705										
PASK	0	genome.wustl.edu	37	chr2	242065992	242065992	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctggagactgcctacatCtggatcggagcccactgcca	10	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	242065992	242065992	C	G	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.2338	p.D780H	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	42	0	0	59	12	16.9	-	-	-	G	242065992	C	G	242065992	3	3	240	1	0	0	0	0	1	0	0	0	11545	913	32	2	1669	2	PASK	2	242065992	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	74173	242065992	1133381	856	19706										
BOK	0	genome.wustl.edu	37	chr2	242501813	242501813	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctaccgcaacgtggcgcgtCagctgcacatctccctgcag	10	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	2	242501813	242501813	C	T	SNP	BOK	ENST00000318407	human	ensembl	69_37n	1	known	nonsense	c.271	p.Q91*	1.000	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BOK	HGNC	ENSG00000176720	22	0	0	25	13	34.21	-	-	-	T	242501813	C	T	242501813	4	4	240	1	0	0	0	0	0	1	0	0	1489	827	29	2	277	2	BOK	2	242501813	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	435821	242501813	697560	857	19707										
CNTN6	0	genome.wustl.edu	37	chr3	1418739	1418739	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggtggaggaagtcggtctGaactcgtcattacgtgggag	17	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	1418739	1418739	G	C	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.2146	p.E716Q	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	151	0	0	164	36	17.91	-	-	-	C	1418739	G	C	1418739	3	2	240	1	0	0	0	0	1	0	0	0	3675	1291	45	2	2208	2	CNTN6	3	1418739	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		1418739	196603691	858	19708										
IL5RA	0	genome.wustl.edu	37	chr3	3139598	3139598	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcaaagggcctgatagcaGagtgcttgctggagccgtta	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	3139598	3139598	G	C	SNP	IL5RA	ENST00000256452	human	ensembl	69_37n	-1	known	missense	c.665	p.S222C	0.000	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181	87	0	0	45	41	47.67	-	-	-	C	3139598	G	C	3139598	3	2	240	1	0	0	0	0	1	0	0	0	7754	942	33	2	647	2	IL5RA	3	3139598	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1720859	3139598	194882832	859	19709										
SUMF1	0	genome.wustl.edu	37	chr3	4452578	4452578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtttcttcaacagaatgatGaacagtccaccagtctgaag	8	10	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	4452578	4452578	G	A	SNP	SUMF1	ENST00000448413	human	ensembl	69_37n	-1	known	missense	c.925	p.H309Y	0.926	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF1	HGNC	ENSG00000144455	76	0	0	85	16	15.84	-	-	-	A	4452578	G	A	4452578	3	1	240	1	0	0	0	0	1	0	0	0	15476	1290	45	2	211	2	SUMF1	3	4452578	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1312980	4452578	193569852	860	19710										
MTMR14	0	genome.wustl.edu	37	chr3	9695347	9695347	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctggagctgtttggccgaGactactgtttcagcgtgatt	13	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	9695347	9695347	G	C	SNP	MTMR14	ENST00000296003	human	ensembl	69_37n	1	known	missense	c.202	p.D68H	1.000	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719	112	0	0	132	17	11.41	-	-	-	C	9695347	G	C	9695347	3	2	240	1	0	0	0	0	1	0	0	0	10014	942	33	2	208	2	MTMR14	3	9695347	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5242769	9695347	188327083	861	19711										
JAGN1	0	genome.wustl.edu	37	chr3	9934815	9934815	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacattagctacctggtgctCtccatgatcagcatgggact	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	9934815	9934815	C	G	SNP	JAGN1	ENST00000307768	human	ensembl	69_37n	1	known	silent	c.306	p.L102	1.000	pfam_DUF1352	pfam_DUF1352	-	no_errors	JAGN1	HGNC	ENSG00000171135	86	0	0	109	86	44.1	-	-	-	G	9934815	C	G	9934815	2	3	240	1	0	0	0	0	0	0	0	1	7990	900	32	2		2	JAGN1	3	9934815	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	239468	9934815	188087615	862	19712										
SEC13	0	genome.wustl.edu	37	chr3	10343034	10343034	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgcacacccactgcccatCaactgactccttccacaggg	7	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	10343034	10343034	C	T	SNP	SEC13	ENST00000350697	human	ensembl	69_37n	-1	known	missense	c.880	p.D294N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020	67	0	0	56	15	21.13	-	-	-	T	10343034	C	T	10343034	3	4	240	1	0	0	0	0	1	0	0	0	14068	826	29	2	92	2	SEC13	3	10343034	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	408219	10343034	187679396	863	19713										
ATG7	0	genome.wustl.edu	37	chr3	11356878	11356878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaaggagtcacagctcttCcttacttcttaatcaagtat	6	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	11356878	11356878	C	T	SNP	ATG7	ENST00000354449	human	ensembl	69_37n	1	known	missense	c.589	p.P197S	1.000	tigrfam_E1-like_Apg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	-	no_errors	ATG7	HGNC	ENSG00000197548	115	0	0	91	22	19.47	-	-	-	T	11356878	C	T	11356878	3	4	240	1	0	0	0	0	1	0	0	0	1105	855	30	2	611	2	ATG7	3	11356878	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1013844	11356878	186665552	864	19714										
SYN2	0	genome.wustl.edu	37	chr3	12232086	12232086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaaagcagagaccatccgGagcttgaggaagtcctttgc	12	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	12232086	12232086	G	A	SNP	SYN2	ENST00000426379	human	ensembl	69_37n	1	known	missense	c.1736	p.G579E	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYN2	HGNC	ENSG00000157152	76	0	0	72	12	14.29	-	-	-	A	12232086	G	A	12232086	3	1	240	1	0	0	0	0	1	0	0	0	15533	1161	41	2	1829	2	SYN2	3	12232086	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	875208	12232086	185790344	865	19715										
NUP210	0	genome.wustl.edu	37	chr3	13407449	13407449	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggcccctggctcaccttGaggggcaggtaggcagcaat	15	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	13407449	13407449	G	A	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	silent	c.1929	p.L643	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	61	0	0	54	21	28	-	-	-	A	13407449	G	A	13407449	2	1	240	1	0	0	0	0	0	0	0	1	10833	1277	45	2		2	NUP210	3	13407449	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1175363	13407449	184614981	866	19716										
NUP210	0	genome.wustl.edu	37	chr3	13429821	13429821	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accttgtagacagcctcctgGatgcgagccttgagcttgga	12	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	13429821	13429821	G	A	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	silent	c.666	p.I222	0.999	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	48	0	0	47	6	11.32	-	-	-	A	13429821	G	A	13429821	2	1	240	1	0	0	0	0	0	0	0	1	10833	1164	41	2		2	NUP210	3	13429821	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22372	13429821	184592609	867	19717										
FBLN2	0	genome.wustl.edu	37	chr3	13649653	13649653	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagatccctgagagtggCactgaggacaacgtctgcag	14	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	13649653	13649653	C	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	silent	c.1398	p.G466	0.000	pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,pfscan_Anaphylatoxin/fibulin	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	54	0	0	66	13	16.46	-	-	-	A	13649653	C	A	13649653	2	1	240	1	0	0	0	0	0	0	0	1	5745	697	25	4		4	FBLN2	3	13649653	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	219832	13649653	184372777	868	19718										
FBLN2	0	genome.wustl.edu	37	chr3	13668000	13668000	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccggggcgagcactgtgtGaacacactgggctccttcca	13	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	13668000	13668000	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	silent	c.2352	p.V784	0.997	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	12	0	0	16	6	27.27	-	-	-	A	13668000	G	A	13668000	2	1	240	1	0	0	0	0	0	0	0	1	5745	1277	45	2		2	FBLN2	3	13668000	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18347	13668000	184354430	869	19719										
WNT7A	0	genome.wustl.edu	37	chr3	13921257	13921257	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttacccgatccggaggtaGaccatgcccaggctgagaaa	11	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	13921257	13921257	G	C	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	silent	c.57	p.V19	0.957	prints_Wnt7	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	25	0	0	19	6	24	-	-	-	C	13921257	G	C	13921257	2	2	240	1	0	0	0	0	0	0	0	1	17491	929	33	2		2	WNT7A	3	13921257	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	253257	13921257	184101173	870	19720										
XPC	0	genome.wustl.edu	37	chr3	14190090	14190090	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagtagccgccatggaaatCaaagccagtgatggcctgga	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	14190090	14190090	C	G	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	missense	c.2392	p.D798H	1.000	pfam_Rad4_beta-hairpin_dom3,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	32	0	0	75	14	15.73	-	-	-	G	14190090	C	G	14190090	3	3	240	1	0	0	0	0	1	0	0	0	17538	826	29	2	446	2	XPC	3	14190090	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	268833	14190090	183832340	871	19721										
XPC	0	genome.wustl.edu	37	chr3	14200089	14200089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcactcccactctcctCtttataagacaccctggagg	5	16	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	14200089	14200089	C	G	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	missense	c.1294	p.E432Q	1.000	tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	42	0	0	58	13	18.31	-	-	-	G	14200089	C	G	14200089	3	3	240	1	0	0	0	0	1	0	0	0	17538	922	32	2		2	XPC	3	14200089	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9999	14200089	183822341	872	19722										
C3orf20	0	genome.wustl.edu	37	chr3	14724385	14724385	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcacttgggaagagctcatCagtgacccttcagtgcctac	9	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	14724385	14724385	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.165	p.I55	0.061	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	71	0	0	76	18	19.15	-	-	-	T	14724385	C	T	14724385	2	4	240	1	0	0	0	0	0	0	0	1	2233	816	29	2		2	C3orf20	3	14724385	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	524296	14724385	183298045	873	19723										
FGD5	0	genome.wustl.edu	37	chr3	14861604	14861604	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggacttcgtgacttccctCacaggaagcccctatgagtt	10	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	14861604	14861604	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.1026	p.L342	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	68	0	0	69	25	26.6	-	-	-	T	14861604	C	T	14861604	2	4	240	1	0	0	0	0	0	0	0	1	5882	813	29	2		2	FGD5	3	14861604	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	137219	14861604	183160826	874	19724										
FGD5	0	genome.wustl.edu	37	chr3	14861645	14861645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcccaactgagagcacctCtttttgcagcgagagctgtt	9	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	14861645	14861645	C	G	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.1067	p.S356C	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	49	0	0	61	15	19.74	-	-	-	G	14861645	C	G	14861645	3	3	240	1	0	0	0	0	1	0	0	0	5882	913	32	2	1069	2	FGD5	3	14861645	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41	14861645	183160785	875	19725										
ZFYVE20	0	genome.wustl.edu	37	chr3	15115954	15115954	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaaggtgggtgcgaggctCtctgctgggctccagctgaa	16	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15115954	15115954	C	G	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	missense	c.1690	p.E564Q	0.101	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	51	0	0	64	12	15.79	-	-	-	G	15115954	C	G	15115954	3	3	240	1	0	0	0	0	1	0	0	0	17762	922	32	2	668	2	ZFYVE20	3	15115954	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	254309	15115954	182906476	876	19726										
ZFYVE20	0	genome.wustl.edu	37	chr3	15116191	15116191	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgccgcaggttctcctgcaGagtgcgcacttcatccatgc	10	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15116191	15116191	G	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	silent	c.1453	p.L485	0.994	pfam_Rbsn	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	41	0	0	54	14	20.59	-	-	-	A	15116191	G	A	15116191	2	1	240	1	0	0	0	0	0	0	0	1	17762	933	33	2		2	ZFYVE20	3	15116191	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	237	15116191	182906239	877	19727										
ZFYVE20	0	genome.wustl.edu	37	chr3	15122259	15122259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaatgatgctgccatcctGatgtattctggagctttctg	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15122259	15122259	G	A	SNP	ZFYVE20	ENST00000426541	human	ensembl	69_37n	-1	known	missense	c.125	p.S42L	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE20	HGNC	ENSG00000131381	170	0	0	157	31	16.4	-	-	-	A	15122259	G	A	15122259	3	1	240	1	0	0	0	0	1	0	0	0	17762	1280	45	2	1483	2	ZFYVE20	3	15122259	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6068	15122259	182900171	878	19728										
ZFYVE20	0	genome.wustl.edu	37	chr3	15137411	15137411	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtggcaacaccaaagctGatgagaactatcccgtgagt	10	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15137411	15137411	G	A	SNP	ZFYVE20	ENST00000449050	human	ensembl	69_37n	-1	putative	nonsense	c.217	p.Q73*	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	99	0	0	146	31	17.51	-	-	-	A	15137411	G	A	15137411	4	1	240	1	0	0	0	0	0	1	0	0	17762	1305	45	2		2	ZFYVE20	3	15137411	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15152	15137411	182885019	879	19729										
ANKRD28	0	genome.wustl.edu	37	chr3	15756089	15756089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaaatactttttaccactCtggataatggtttgtgatcg	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15756089	15756089	C	G	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1080	p.Q360H	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	121	0	0	96	41	29.93	-	-	-	G	15756089	C	G	15756089	3	3	240	1	0	0	0	0	1	0	0	0	656	912	32	2	2260	2	ANKRD28	3	15756089	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	618678	15756089	182266341	880	19730										
ANKRD28	0	genome.wustl.edu	37	chr3	15765891	15765891	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaattaatatacctacatCaactccaagatctagaaggt	4	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15765891	15765891	C	G	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.790	p.D264H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	73	0	0	72	17	19.1	-	-	-	G	15765891	C	G	15765891	3	3	240	1	0	0	0	0	1	0	0	0	656	826	29	2	2558	2	ANKRD28	3	15765891	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9802	15765891	182256539	881	19731										
ANKRD28	0	genome.wustl.edu	37	chr3	15836777	15836777	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattagtgctcgaacttcatCaggatctccgttaaatatag	7	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	15836777	15836777	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.163	p.D55N	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	87	0	0	98	15	13.27	-	-	-	T	15836777	C	T	15836777	3	4	240	1	0	0	0	0	1	0	0	0	656	826	29	2	3205	2	ANKRD28	3	15836777	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70886	15836777	182185653	882	19732										
RFTN1	0	genome.wustl.edu	37	chr3	16419302	16419302	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgctcaccccctgtggtGaaagttctccaccatctccc	6	17	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	16419302	16419302	G	A	SNP	RFTN1	ENST00000334133	human	ensembl	69_37n	-1	known	missense	c.749	p.S250L	0.002	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378	51	0	0	61	9	12.86	-	-	-	A	16419302	G	A	16419302	3	1	240	1	0	0	0	0	1	0	0	0	13341	1294	45	2	1011	2	RFTN1	3	16419302	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	582525	16419302	181603128	883	19733										
PLCL2	0	genome.wustl.edu	37	chr3	17051210	17051210	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaaaaagacagtctcattCagcagcatgccaacagagaa	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	17051210	17051210	C	T	SNP	PLCL2	ENST00000460467	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLCL2	HGNC	ENSG00000154822	30	0	0	32	6	15.79	-	-	-	T	17051210	C	T	17051210	1	4	240	0	1	0	0	0	0	0	0	0	12114	825	29	2		2	PLCL2	3	17051210	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	631908	17051210	180971220	884	19734										
TBC1D5	0	genome.wustl.edu	37	chr3	17202620	17202620	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttttcccagaggtgcttctGagggtgcgaagaggctgggc	16	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	17202620	17202620	G	A	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	silent	c.2223	p.L741	0.893	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	68	0	0	56	40	41.67	-	-	-	A	17202620	G	A	17202620	2	1	240	1	0	0	0	0	0	0	0	1	15718	1277	45	2		2	TBC1D5	3	17202620	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	151410	17202620	180819810	885	19735										
KAT2B	0	genome.wustl.edu	37	chr3	20156413	20156413	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagaagtatatagtcaaaaCtctcccatctgggatcagga	9	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	20156413	20156413	C	G	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	missense	c.1083	p.N361K	1.000	pirsf_Hist_acetylase_PCAF	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	129	0	0	127	21	14.19	-	-	-	G	20156413	C	G	20156413	3	3	240	1	0	0	0	0	1	0	0	0	8036	564	20	4	1109	4	KAT2B	3	20156413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2953793	20156413	177866017	886	19736										
KAT2B	0	genome.wustl.edu	37	chr3	20168996	20168996	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgttcccatctcaaggattCacagagattgtcttctgtgc	8	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	20168996	20168996	C	T	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	silent	c.1704	p.F568	1.000	pirsf_Hist_acetylase_PCAF,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	202	0	0	266	51	16.09	-	-	-	T	20168996	C	T	20168996	2	4	240	1	0	0	0	0	0	0	0	1	8036	825	29	2		2	KAT2B	3	20168996	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12583	20168996	177853434	887	19737										
UBE2E1	0	genome.wustl.edu	37	chr3	23929154	23929154	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtattctttctcgatatCacttttacaccagaatatcc	5	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	23929154	23929154	C	T	SNP	UBE2E1	ENST00000306627	human	ensembl	69_37n	1	known	silent	c.300	p.I100	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2E1	HGNC	ENSG00000170142	108	0	0	154	19	10.98	-	-	-	T	23929154	C	T	23929154	2	4	240	1	0	0	0	0	0	0	0	1	16949	816	29	2		2	UBE2E1	3	23929154	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3760158	23929154	174093276	888	19738										
TOP2B	0	genome.wustl.edu	37	chr3	25665837	25665837	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagcatctttgccaccatGaagccgagttccaaactgac	8	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	25665837	25665837	G	A	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	missense	c.2446	p.H816Y	1.000	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_cen,smart_Topo_IIA_A/C,prints_TopoII_euk	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	117	0	0	110	22	16.67	-	-	-	A	25665837	G	A	25665837	3	1	240	1	0	0	0	0	1	0	0	0	16462	1290	45	2	2502	2	TOP2B	3	25665837	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1736683	25665837	172356593	889	19739										
TOP2B	0	genome.wustl.edu	37	chr3	25670621	25670621	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aataagcaggccttttatgtGagaaccatcttgatcctaaa	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	25670621	25670621	G	A	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	missense	c.1705	p.H569Y	1.000	superfamily_Topo_IIA_cen,smart_Topo_IIA,prints_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	126	0	0	90	19	17.43	-	-	-	A	25670621	G	A	25670621	3	1	240	1	0	0	0	0	1	0	0	0	16462	1290	45	2	3267	2	TOP2B	3	25670621	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4784	25670621	172351809	890	19740										
TOP2B	0	genome.wustl.edu	37	chr3	25671813	25671813	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatacatacctgtttatgaGaagcttcccgtacattaaga							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	25671813	25671813	G	-	DEL	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	frame_shift_del	c.1553	p.S518fs	1.000	superfamily_Topo_IIA_cen,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	74	0	0	101	18	14.88	-	-	-	-	25671813	G	-	25671813	7	5	240	1	0	1	0	1	0	0	0	0	16462	942	33	0	3427	0	TOP2B	3	25671813	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	1192	25671813	172350617	891	19741										
TOP2B	0	genome.wustl.edu	37	chr3	25674016	25674016	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatgttttccttagtctgaGaatcaaaagttggattttca	7	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	25674016	25674016	G	A	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	missense	c.1187	p.S396F	1.000	pfam_Topo_IIA_bsu_dom2,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	108	0	0	107	19	15.08	-	-	-	A	25674016	G	A	25674016	3	1	240	1	0	0	0	0	1	0	0	0	16462	942	33	2	3801	2	TOP2B	3	25674016	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2203	25674016	172348414	892	19742										
NEK10	0	genome.wustl.edu	37	chr3	27233674	27233674	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatatttcatcatgacatctGatatcatcgaactgacttct	4	9	5	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	27233674	27233674	G	C	SNP	NEK10	ENST00000383771	human	ensembl	69_37n	-1	known	nonsense	c.287	p.S96*	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	83	0	0	83	19	18.63	-	-	-	C	27233674	G	C	27233674	4	2	240	1	0	0	0	0	0	1	0	0	10394	1305	45	2		2	NEK10	3	27233674	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1559658	27233674	170788756	893	19743										
SLC4A7	0	genome.wustl.edu	37	chr3	27450961	27450961	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaggcttaatgcatccttGaagtcactcaagaaaaaagg	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	27450961	27450961	G	A	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	silent	c.1827	p.F609	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	66	0	0	67	19	22.09	-	-	-	A	27450961	G	A	27450961	2	1	240	1	0	0	0	0	0	0	0	1	14747	1281	45	2		2	SLC4A7	3	27450961	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	217287	27450961	170571469	894	19744										
SLC4A7	0	genome.wustl.edu	37	chr3	27473043	27473043	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctgcaggggttccagctCttgaagaaggaagaagatga	14	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	27473043	27473043	C	G	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.896	p.R299T	1.000	pfam_HCO3_transpt_cyt	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	83	0	0	74	11	12.94	-	-	-	G	27473043	C	G	27473043	3	3	240	1	0	0	0	0	1	0	0	0	14747	913	32	2	2851	2	SLC4A7	3	27473043	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22082	27473043	170549387	895	19745										
SLC4A7	0	genome.wustl.edu	37	chr3	27478002	27478002	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataaggtttactccatcggtCaccgccatcttcaacatcct	5	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	27478002	27478002	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.466	p.D156N	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	59	0	0	70	18	20.45	-	-	-	T	27478002	C	T	27478002	3	4	240	1	0	0	0	0	1	0	0	0	14747	826	29	2	3289	2	SLC4A7	3	27478002	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4959	27478002	170544428	896	19746										
EOMES	0	genome.wustl.edu	37	chr3	27758876	27758876	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtccagctgccatcttcctCtggtaagaacctcgacctcc	7	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	27758876	27758876	C	G	SNP	EOMES	ENST00000449599	human	ensembl	69_37n	-1	known	missense	c.1803	p.Q601H	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	70	0	0	60	18	23.08	-	-	-	G	27758876	C	G	27758876	3	3	240	1	0	0	0	0	1	0	0	0	5184	912	32	2	318	2	EOMES	3	27758876	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	280874	27758876	170263554	897	19747										
ZCWPW2	0	genome.wustl.edu	37	chr3	28454653	28454653	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtaaacaaagtgtgggttCaatgtgagaatgaaaattgt	11	2	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	28454653	28454653	C	T	SNP	ZCWPW2	ENST00000383768	human	ensembl	69_37n	1	known	nonsense	c.94	p.Q32*	1.000	pfam_Znf_CW,pfscan_Znf_CW	pfam_Znf_CW,pfam_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559	77	0	0	80	24	23.08	-	-	-	T	28454653	C	T	28454653	4	4	240	1	0	0	0	0	0	1	0	0	17694	827	29	2	96	2	ZCWPW2	3	28454653	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	695777	28454653	169567777	898	19748										
GADL1	0	genome.wustl.edu	37	chr3	30903144	30903144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattattagcctacaggcctCttcaacaaatttttctccag	4	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	30903144	30903144	C	G	SNP	GADL1	ENST00000282538	human	ensembl	69_37n	-1	known	missense	c.151	p.E51Q	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GADL1	HGNC	ENSG00000144644	192	0	0	200	25	11.11	-	-	-	G	30903144	C	G	30903144	3	3	240	1	0	0	0	0	1	0	0	0	6234	922	32	2	1470	2	GADL1	3	30903144	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2448491	30903144	167119286	899	19749										
OSBPL10	0	genome.wustl.edu	37	chr3	31725465	31725465	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctcgtgaaaggctgtgaGataatactcaacgaagcaaa	10	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	31725465	31725465	G	A	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	missense	c.1387	p.L463F	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	57	0	0	75	19	20.21	-	-	-	A	31725465	G	A	31725465	3	1	240	1	0	0	0	0	1	0	0	0	11348	942	33	2	927	2	OSBPL10	3	31725465	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	822321	31725465	166296965	900	19750										
DYNC1LI1	0	genome.wustl.edu	37	chr3	32570035	32570035	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcctcctggagagccagtCtttttactcaacaaactgtt	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	32570035	32570035	C	G	SNP	DYNC1LI1	ENST00000273130	human	ensembl	69_37n	-1	known	missense	c.1365	p.K455N	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635	79	0	0	56	44	44	-	-	-	G	32570035	C	G	32570035	3	3	240	1	0	0	0	0	1	0	0	0	4879	912	32	2	214	2	DYNC1LI1	3	32570035	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	844570	32570035	165452395	901	19751										
DYNC1LI1	0	genome.wustl.edu	37	chr3	32576114	32576114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttttgttttcttttactGaagtgtaaataagtgctgca	7	4	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	32576114	32576114	G	A	SNP	DYNC1LI1	ENST00000273130	human	ensembl	69_37n	-1	known	missense	c.857	p.S286L	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635	81	0	0	68	15	18.07	-	-	-	A	32576114	G	A	32576114	3	1	240	1	0	0	0	0	1	0	0	0	4879	1294	45	2	742	2	DYNC1LI1	3	32576114	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6079	32576114	165446316	902	19752										
DYNC1LI1	0	genome.wustl.edu	37	chr3	32578551	32578551	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaataaaatcaaaatgttCatctctgtagtcatgttctt	5	7	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	32578551	32578551	C	T	SNP	DYNC1LI1	ENST00000273130	human	ensembl	69_37n	-1	known	missense	c.784	p.E262K	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635	83	0	0	82	19	18.81	-	-	-	T	32578551	C	T	32578551	3	4	240	1	0	0	0	0	1	0	0	0	4879	835	29	2	819	2	DYNC1LI1	3	32578551	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2437	32578551	165443879	903	19753										
DYNC1LI1	0	genome.wustl.edu	37	chr3	32612233	32612233	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatcccggcggagaagaaccGaaggagccgactcgccccac	12	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	32612233	32612233	G	A	SNP	DYNC1LI1	ENST00000273130	human	ensembl	69_37n	-1	known	silent	c.30	p.F10	1.000	NULL	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635	25	0	0	3	6	66.67	-	-	-	A	32612233	G	A	32612233	2	1	240	1	0	0	0	0	0	0	0	1	4879	1049	37	1		1	DYNC1LI1	3	32612233	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33682	32612233	165410197	904	19754										
CNOT10	0	genome.wustl.edu	37	chr3	32769303	32769303	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaagctgttcaggtttatCatgcaaatcctcgcctctgg	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	32769303	32769303	C	G	SNP	CNOT10	ENST00000454516	human	ensembl	69_37n	1	known	missense	c.1336	p.H446D	1.000	smart_TPR_repeat	pfam_TPR-1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	84	0	0	74	13	14.94	-	-	-	G	32769303	C	G	32769303	3	3	240	1	0	0	0	0	1	0	0	0	3648	826	29	2	1194	2	CNOT10	3	32769303	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157070	32769303	165253127	905	19755										
SUSD5	0	genome.wustl.edu	37	chr3	33195183	33195183	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcagaaaactgctttttgGtgtcatcatccacctccttt	6	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	33195183	33195183	G	C	SNP	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	missense	c.941	p.T314S	0.005	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	46	0	0	58	33	36.26	-	-	-	C	33195183	G	C	33195183	3	2	240	1	0	0	0	0	1	0	0	0	15502	1261	44	4	952	4	SUSD5	3	33195183	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	425880	33195183	164827247	906	19756										
ARPP21	0	genome.wustl.edu	37	chr3	35748557	35748557	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgagataactctagtattGataaagaagacaatcaggtt	9	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	35748557	35748557	G	T	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	missense	c.778	p.D260Y	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	82	0	0	91	15	14.15	-	-	-	T	35748557	G	T	35748557	3	4	240	1	0	0	0	0	1	0	0	0	982	1290	45	2	821	2	ARPP21	3	35748557	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2553374	35748557	162273873	907	19757										
TRANK1	0	genome.wustl.edu	37	chr3	36899234	36899234	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttccccaggtgggcagcaGagtcctgccggctcctcctc	12	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	36899234	36899234	G	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1847	p.S616C	0.003	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	60	0	0	66	25	27.17	-	-	-	C	36899234	G	C	36899234	3	2	240	1	0	0	0	0	1	0	0	0	16550	942	33	2	6978	2	TRANK1	3	36899234	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1150677	36899234	161123196	908	19758										
EPM2AIP1	0	genome.wustl.edu	37	chr3	37034113	37034113	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtcaatgctcaggatcctCtgccttgtgatatctggaga	10	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	37034113	37034113	C	G	SNP	EPM2AIP1	ENST00000322716	human	ensembl	69_37n	-1	known	missense	c.456	p.Q152H	0.984	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567	62	0	0	67	16	19.28	-	-	-	G	37034113	C	G	37034113	3	3	240	1	0	0	0	0	1	0	0	0	5221	912	32	2	1371	2	EPM2AIP1	3	37034113	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	134879	37034113	160988317	909	19759										
PLCD1	0	genome.wustl.edu	37	chr3	38049301	38049301	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttcacaaagagggtggctGatggatgctggtccccgttc	13	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	38049301	38049301	G	C	SNP	PLCD1	ENST00000463876	human	ensembl	69_37n	-1	known	nonsense	c.2297	p.S766*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	50	0	0	81	17	17.35	-	-	-	C	38049301	G	C	38049301	4	2	240	1	0	0	0	0	0	1	0	0	12105	1294	45	2	40	2	PLCD1	3	38049301	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1015188	38049301	159973129	910	19760										
PLCD1	0	genome.wustl.edu	37	chr3	38050068	38050068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacccacaggccccgttgtCctggaagcggccctggtaca	12	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	38050068	38050068	C	T	SNP	PLCD1	ENST00000463876	human	ensembl	69_37n	-1	known	missense	c.1846	p.D616N	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	34	0	0	44	5	10.2	-	-	-	T	38050068	C	T	38050068	3	4	240	1	0	0	0	0	1	0	0	0	12105	855	30	2	503	2	PLCD1	3	38050068	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	767	38050068	159972362	911	19761										
SLC22A14	0	genome.wustl.edu	37	chr3	38354926	38354926	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgggcctctgtcctggacttCtgtaagaataggcagctctg	12	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	38354926	38354926	C	T	SNP	SLC22A14	ENST00000273173	human	ensembl	69_37n	1	known	silent	c.1113	p.F371	0.798	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	118	0	0	115	27	19.01	-	-	-	T	38354926	C	T	38354926	2	4	240	1	0	0	0	0	0	0	0	1	14534	912	32	2		2	SLC22A14	3	38354926	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	304858	38354926	159667504	912	19762										
SCN5A	0	genome.wustl.edu	37	chr3	38651376	38651376	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgatgagggcaaagacgctGaggcagaagactgtgaggac	16	8	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	38651376	38651376	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.783	p.L261	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	57	0	0	68	17	20	-	-	-	A	38651376	G	A	38651376	2	1	240	1	0	0	0	0	0	0	0	1	14010	1277	45	2		2	SCN5A	3	38651376	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	296450	38651376	159371054	913	19763										
SCN10A	0	genome.wustl.edu	37	chr3	38805036	38805036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaatgctctaagaactctGaatgtccgcaggcctgagat	9	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	38805036	38805036	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.651	p.F217L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	128	0	0	86	78	47.56	-	-	-	C	38805036	G	C	38805036	3	2	240	1	0	0	0	0	1	0	0	0	14000	1281	45	2	5311	2	SCN10A	3	38805036	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	153660	38805036	159217394	914	19764										
TTC21A	0	genome.wustl.edu	37	chr3	39150702	39150702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcctatggagtcctcaaaGaaggtaaggacttggcagtg	13	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	39150702	39150702	G	C	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.154	p.E52Q	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	76	0	0	84	15	15.15	-	-	-	C	39150702	G	C	39150702	3	2	240	1	0	0	0	0	1	0	0	0	16784	943	33	2	160	2	TTC21A	3	39150702	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	345666	39150702	158871728	915	19765										
TTC21A	0	genome.wustl.edu	37	chr3	39166649	39166649	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagtcccttgggaagtctGaggtcagagctccctggggg	16	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	39166649	39166649	G	C	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.1213	p.E405Q	0.732	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	68	0	0	92	21	18.58	-	-	-	C	39166649	G	C	39166649	3	2	240	1	0	0	0	0	1	0	0	0	16784	1291	45	2	1251	2	TTC21A	3	39166649	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15947	39166649	158855781	916	19766										
ZNF619	0	genome.wustl.edu	37	chr3	40528997	40528997	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgtagctatgactgcatCatccatgaacgaattcacaa	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	40528997	40528997	C	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	silent	c.1116	p.I372	0.057	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	73	0	0	49	56	53.33	-	-	-	T	40528997	C	T	40528997	2	4	240	1	0	0	0	0	0	0	0	1	18139	816	29	2		2	ZNF619	3	40528997	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1362348	40528997	157493433	917	19767										
ULK4	0	genome.wustl.edu	37	chr3	41949345	41949345	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtctgctcaccttggtcaGaggagaagtcttctgtggtg	13	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	41949345	41949345	G	C	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	missense	c.1174	p.L392V	0.017	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	82	0	0	77	23	23	-	-	-	C	41949345	G	C	41949345	3	2	240	1	0	0	0	0	1	0	0	0	17075	933	33	2	2757	2	ULK4	3	41949345	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1420348	41949345	156073085	918	19768										
TRAK1	0	genome.wustl.edu	37	chr3	42233068	42233068	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggccagccagctgaagacaGagaccatcacctatgaggag	12	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42233068	42233068	G	C	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	missense	c.535	p.E179Q	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	51	0	0	66	9	11.84	-	-	-	C	42233068	G	C	42233068	3	2	240	1	0	0	0	0	1	0	0	0	16545	943	33	2	851	2	TRAK1	3	42233068	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	283723	42233068	155789362	919	19769										
TRAK1	0	genome.wustl.edu	37	chr3	42233127	42233127	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgactgcgtgaaggagctGagtatgtccccgcactgctg	13	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42233127	42233127	G	C	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	silent	c.594	p.L198	0.998	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	52	0	0	69	10	12.5	-	-	-	C	42233127	G	C	42233127	2	2	240	1	0	0	0	0	0	0	0	1	16545	1304	45	2		2	TRAK1	3	42233127	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59	42233127	155789303	920	19770										
TRAK1	0	genome.wustl.edu	37	chr3	42251618	42251618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaggaggaggggtctggtGagggcaccacgataagtcct	18	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42251618	42251618	G	A	SNP	TRAK1	ENST00000341421	human	ensembl	69_37n	1	known	missense	c.1930	p.E644K	1.000	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	46	0	0	67	18	20.93	-	-	-	A	42251618	G	A	42251618	3	1	240	1	0	0	0	0	1	0	0	0	16545	1291	45	2	2274	2	TRAK1	3	42251618	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18491	42251618	155770812	921	19771										
LYZL4	0	genome.wustl.edu	37	chr3	42448401	42448401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagtcactgccacgcatctGaaagaggccaaagccagtgt	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42448401	42448401	G	C	SNP	LYZL4	ENST00000287748	human	ensembl	69_37n	-1	known	missense	c.229	p.Q77E	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL4	HGNC	ENSG00000157093	30	0	0	26	15	36.59	-	-	-	C	42448401	G	C	42448401	3	2	240	1	0	0	0	0	1	0	0	0	9200	1299	45	2	223	2	LYZL4	3	42448401	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	196783	42448401	155574029	922	19772										
SEC22C	0	genome.wustl.edu	37	chr3	42610512	42610512	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtccatcccttacccgtacCacgcaggcaaaaaagatcac	6	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42610512	42610512	C	G	SNP	SEC22C	ENST00000264454	human	ensembl	69_37n	-1	known	silent	c.27	p.V9	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22C	HGNC	ENSG00000093183	68	0	0	40	10	20	-	-	-	G	42610512	C	G	42610512	2	3	240	1	0	0	0	0	0	0	0	1	14078	581	21	4		4	SEC22C	3	42610512	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162111	42610512	155411918	923	19773										
CCDC13	0	genome.wustl.edu	37	chr3	42793468	42793468	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggccctcggtggcttggctCctgcgtcggtggcccccttg	16	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42793468	42793468	C	G	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	missense	c.563	p.G188A	0.140	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	57	0	0	30	13	30.23	-	-	-	G	42793468	C	G	42793468	3	3	240	1	0	0	0	0	1	0	0	0	2790	855	30	2	1632	2	CCDC13	3	42793468	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	182956	42793468	155228962	924	19774										
CYP8B1	0	genome.wustl.edu	37	chr3	42915919	42915919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgtcagggtccaccaactCtaagtcaaagtgtgtgacca	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42915919	42915919	C	G	SNP	CYP8B1	ENST00000316161	human	ensembl	69_37n	-1	known	missense	c.1390	p.E464Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432	54	0	0	35	19	35.19	-	-	-	G	42915919	C	G	42915919	3	3	240	1	0	0	0	0	1	0	0	0	4229	922	32	2	119	2	CYP8B1	3	42915919	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	122451	42915919	155106511	925	19775										
ZNF662	0	genome.wustl.edu	37	chr3	42950311	42950311	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccatttcccaaaccggctCtgatttcccagctggagcga	8	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	42950311	42950311	C	G	SNP	ZNF662	ENST00000328199	human	ensembl	69_37n	1	known	missense	c.241	p.L81V	0.913	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983	75	0	0	24	36	60	-	-	-	G	42950311	C	G	42950311	3	3	240	1	0	0	0	0	1	0	0	0	18167	912	32	2	254	2	ZNF662	3	42950311	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34392	42950311	155072119	926	19776										
ZNF197	0	genome.wustl.edu	37	chr3	44673650	44673650	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagagaacccaagaaatCaattaatggcacttatgctc	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	44673650	44673650	C	G	SNP	ZNF197	ENST00000344387	human	ensembl	69_37n	1	known	missense	c.604	p.Q202E	0.917	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448	129	0	0	129	51	28.33	-	-	-	G	44673650	C	G	44673650	3	3	240	1	0	0	0	0	1	0	0	0	17855	827	29	2	614	2	ZNF197	3	44673650	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1723339	44673650	153348780	927	19777										
ZNF35	0	genome.wustl.edu	37	chr3	44700638	44700638	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgggaaggccttcattcaGagtgcaaacctcgttgtgca	12	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	44700638	44700638	G	C	SNP	ZNF35	ENST00000396056	human	ensembl	69_37n	1	known	missense	c.783	p.Q261H	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981	59	0	0	65	26	28.57	-	-	-	C	44700638	G	C	44700638	3	2	240	1	0	0	0	0	1	0	0	0	17958	933	33	2	793	2	ZNF35	3	44700638	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26988	44700638	153321792	928	19778										
KIF15	0	genome.wustl.edu	37	chr3	44854636	44854636	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcacagttgaatgtccttGaaaagcagcttcaagagact	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	44854636	44854636	G	T	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	nonsense	c.2347	p.E783*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	135	0	0	106	29	21.32	-	-	-	T	44854636	G	T	44854636	4	4	240	1	0	0	0	0	0	1	0	0	8329	1291	45	2	2421	2	KIF15	3	44854636	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	153998	44854636	153167794	929	19779										
TGM4	0	genome.wustl.edu	37	chr3	44952809	44952809	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacttgtctgcaattgtatCttcaagaataccctggccat	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	44952809	44952809	C	T	SNP	TGM4	ENST00000296125	human	ensembl	69_37n	1	known	silent	c.1824	p.I608	0.115	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810	125	0	0	151	25	14.2	-	-	-	T	44952809	C	T	44952809	2	4	240	1	0	0	0	0	0	0	0	1	15927	903	32	2		2	TGM4	3	44952809	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98173	44952809	153069621	930	19780										
TGM4	0	genome.wustl.edu	37	chr3	44955191	44955191	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtgaaagagattaatgctCagaagattgttctcatcacc	8	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	44955191	44955191	C	G	SNP	TGM4	ENST00000296125	human	ensembl	69_37n	1	known	missense	c.2029	p.Q677E	0.921	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810	102	0	0	97	13	11.82	-	-	-	G	44955191	C	G	44955191	3	3	240	1	0	0	0	0	1	0	0	0	15927	827	29	2	2083	2	TGM4	3	44955191	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2382	44955191	153067239	931	19781										
SLC6A20	0	genome.wustl.edu	37	chr3	45801403	45801403	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccgtgaggatgtagtcgctCaggtagaagacaaagaggct	14	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	45801403	45801403	C	G	SNP	SLC6A20	ENST00000358525	human	ensembl	69_37n	-1	known	silent	c.1575	p.L525	0.974	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A20	HGNC	ENSG00000163817	51	0	0	44	16	26.23	-	-	-	G	45801403	C	G	45801403	2	3	240	1	0	0	0	0	0	0	0	1	14773	813	29	2		2	SLC6A20	3	45801403	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	846212	45801403	152221027	932	19782										
CCRL2	0	genome.wustl.edu	37	chr3	46450096	46450096	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttataaacctcagatggaaGaccagaaatacaagtgtgca	8	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	46450096	46450096	G	A	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	missense	c.562	p.D188N	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	67	0	0	92	14	13.21	-	-	-	A	46450096	G	A	46450096	3	1	240	1	0	0	0	0	1	0	0	0	2979	942	33	2	568	2	CCRL2	3	46450096	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	648693	46450096	151572334	933	19783										
PRSS42	0	genome.wustl.edu	37	chr3	46875149	46875149	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactcctcccacgattctcaGaggggttcggccacacactg	9	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	46875149	46875149	G	C	SNP	PRSS42	ENST00000429665	human	ensembl	69_37n	-1	known	missense	c.232	p.L78V	0.015	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS42	HGNC	ENSG00000178055	20	0	0	41	11	21.15	-	-	-	C	46875149	G	C	46875149	3	2	240	1	0	0	0	0	1	0	0	0	12708	933	33	2	664	2	PRSS42	3	46875149	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	425053	46875149	151147281	934	19784										
PTPN23	0	genome.wustl.edu	37	chr3	47451182	47451182	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaccctggtggcctcgtatGaagcctatgaggacctgatg	13	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	47451182	47451182	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.1987	p.E663K	0.997	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	23	0	0	37	10	21.28	-	-	-	A	47451182	G	A	47451182	3	1	240	1	0	0	0	0	1	0	0	0	12871	1291	45	2	2061	2	PTPN23	3	47451182	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	576033	47451182	150571248	935	19785										
SCAP	0	genome.wustl.edu	37	chr3	47462167	47462167	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtggggtgtggacggcctCacagccagctgccgctcgta	16	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	47462167	47462167	C	G	SNP	SCAP	ENST00000265565	human	ensembl	69_37n	-1	known	silent	c.1440	p.V480	0.571	NULL	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650	33	0	0	28	8	22.22	-	-	-	G	47462167	C	G	47462167	2	3	240	1	0	0	0	0	0	0	0	1	13964	813	29	2		2	SCAP	3	47462167	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10985	47462167	150560263	936	19786										
ATRIP	0	genome.wustl.edu	37	chr3	48493235	48493235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttctagaggaacagagaaGatcacattttcttcttgagc	9	8	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	48493235	48493235	G	A	SNP	ATRIP	ENST00000320211	human	ensembl	69_37n	1	known	missense	c.482	p.R161K	1.000	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053	85	0	0	70	21	22.83	-	-	-	A	48493235	G	A	48493235	3	1	240	1	0	0	0	0	1	0	0	0	1209	942	33	2	492	2	ATRIP	3	48493235	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1031068	48493235	149529195	937	19787										
ATRIP	0	genome.wustl.edu	37	chr3	48501607	48501607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagaacctggcattcactgGactgaatctggttgcccgga	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	48501607	48501607	G	C	SNP	ATRIP	ENST00000320211	human	ensembl	69_37n	1	known	missense	c.1154	p.G385A	1.000	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053	37	0	0	51	7	12.07	-	-	-	C	48501607	G	C	48501607	3	2	240	1	0	0	0	0	1	0	0	0	1209	1174	41	2	1184	2	ATRIP	3	48501607	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8372	48501607	149520823	938	19788										
COL7A1	0	genome.wustl.edu	37	chr3	48623527	48623527	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgagtagtgaaggatgcctGacacagggctgtggccagac	15	9	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	48623527	48623527	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	nonsense	c.3703	p.Q1235*	0.995	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	39	0	0	26	13	33.33	-	-	-	A	48623527	G	A	48623527	4	1	240	1	0	0	0	0	0	1	0	0	3734	1299	45	2	5499	2	COL7A1	3	48623527	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	121920	48623527	149398903	939	19789										
NCKIPSD	0	genome.wustl.edu	37	chr3	48719798	48719798	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctggtagaggcctccatCtgccccaagatgctcagaac	9	15	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	48719798	48719798	C	G	SNP	NCKIPSD	ENST00000294129	human	ensembl	69_37n	-1	known	missense	c.469	p.D157H	0.919	NULL	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672	52	0	0	75	10	11.76	-	-	-	G	48719798	C	G	48719798	3	3	240	1	0	0	0	0	1	0	0	0	10297	913	32	2	1743	2	NCKIPSD	3	48719798	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96271	48719798	149302632	940	19790										
SLC25A20	0	genome.wustl.edu	37	chr3	48936159	48936159	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtgaccgacgaacaccagGcacacgccgccaaagccgcc	12	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	48936159	48936159	G	T	SNP	SLC25A20	ENST00000319017	human	ensembl	69_37n	-1	known	nonsense	c.69	p.C23*	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A20	HGNC	ENSG00000178537	22	0	0	19	5	20.83	-	-	-	T	48936159	G	T	48936159	4	4	240	1	0	0	0	0	0	1	0	0	14572	1195	42	4	872	4	SLC25A20	3	48936159	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	216361	48936159	149086271	941	19791										
P4HTM	0	genome.wustl.edu	37	chr3	49028331	49028331	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatccgaaccctcagcctCaagccgctgctcttcggtaa	7	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49028331	49028331	C	G	SNP	P4HTM	ENST00000444213	human	ensembl	69_37n	1	putative	missense	c.274	p.Q92E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	P4HTM	HGNC	ENSG00000178467	23	0	0	27	8	22.86	-	-	-	G	49028331	C	G	49028331	3	3	240	1	0	0	0	0	1	0	0	0	11433	813	29	2	426	2	P4HTM	3	49028331	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92172	49028331	148994099	942	19792										
WDR6	0	genome.wustl.edu	37	chr3	49049714	49049714	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcctgggggtcgggtgcaGaatattgggcactgctttgg	18	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49049714	49049714	G	A	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	silent	c.837	p.Q279	0.997	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	63	0	0	92	18	16.36	-	-	-	A	49049714	G	A	49049714	2	1	240	1	0	0	0	0	0	0	0	1	17407	933	33	2		2	WDR6	3	49049714	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21383	49049714	148972716	943	19793										
WDR6	0	genome.wustl.edu	37	chr3	49051823	49051823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccgccccccaggctctttCttttgcaggattctgggcgg	11	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49051823	49051823	C	G	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.2764	p.L922V	0.037	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	82	0	0	111	19	14.62	-	-	-	G	49051823	C	G	49051823	3	3	240	1	0	0	0	0	1	0	0	0	17407	913	32	2	2778	2	WDR6	3	49051823	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2109	49051823	148970607	944	19794										
QRICH1	0	genome.wustl.edu	37	chr3	49081898	49081898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaccgaacataataaagatCggagaaaatgtcatctaccc	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49081898	49081898	C	A	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	missense	c.1711	p.D571Y	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	39	0	0	32	36	52.94	-	-	-	A	49081898	C	A	49081898	3	1	240	1	0	0	0	0	1	0	0	0	12962	884	31	3	639	3	QRICH1	3	49081898	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30075	49081898	148940532	945	19795										
QARS	0	genome.wustl.edu	37	chr3	49133479	49133479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctcacacctttcctgggtCttccttcagtgtgacagttc	8	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49133479	49133479	C	G	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.2311	p.D771H	1.000	superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	72	0	0	64	19	22.89	-	-	-	G	49133479	C	G	49133479	3	3	240	1	0	0	0	0	1	0	0	0	12954	913	32	2	20	2	QARS	3	49133479	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51581	49133479	148888951	946	19796										
QARS	0	genome.wustl.edu	37	chr3	49135466	49135466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccacggagaaatatccaaGacgctcaaactggaacttgt	8	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49135466	49135466	G	C	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.2236	p.L746V	0.983	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	81	0	0	77	23	23	-	-	-	C	49135466	G	C	49135466	3	2	240	1	0	0	0	0	1	0	0	0	12954	942	33	2	99	2	QARS	3	49135466	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1987	49135466	148886964	947	19797										
QARS	0	genome.wustl.edu	37	chr3	49136834	49136834	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccgccgtcgcagggccgtGagtgtaaagagccgtgggtc	16	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49136834	49136834	G	T	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	silent	c.1557	p.L519	0.998	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	101	0	0	98	23	19.01	-	-	-	T	49136834	G	T	49136834	2	4	240	1	0	0	0	0	0	0	0	1	12954	1277	45	2		2	QARS	3	49136834	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1368	49136834	148885596	948	19798										
QARS	0	genome.wustl.edu	37	chr3	49138812	49138812	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatagccaaagttgaaattGatggctttggcatgtccaat	10	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49138812	49138812	G	C	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.852	p.I284M	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	89	0	0	51	66	56.41	-	-	-	C	49138812	G	C	49138812	3	2	240	1	0	0	0	0	1	0	0	0	12954	1280	45	2	1535	2	QARS	3	49138812	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1978	49138812	148883618	949	19799										
USP4	0	genome.wustl.edu	37	chr3	49349010	49349010	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatcaccatttgcaatgagaGaggcagacactgaggaatag	11	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49349010	49349010	G	A	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.773	p.S258F	1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	91	0	0	125	24	16.11	-	-	-	A	49349010	G	A	49349010	3	1	240	1	0	0	0	0	1	0	0	0	17168	942	33	2	2182	2	USP4	3	49349010	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	210198	49349010	148673420	950	19800										
BSN	0	genome.wustl.edu	37	chr3	49693646	49693646	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctcagtcctgcggcccatGgtgcgtggtggcatgtacag	15	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49693646	49693646	G	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.6657	p.M2219I	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	34	0	0	28	4	12.5	-	-	-	T	49693646	G	T	49693646	3	4	240	1	0	0	0	0	1	0	0	0	1538	1348	47	4	6675	4	BSN	3	49693646	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	344636	49693646	148328784	951	19801										
BSN	0	genome.wustl.edu	37	chr3	49694559	49694559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggacttgggcagcctcgtGagcctgtgctgcaccggggt	16	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49694559	49694559	G	A	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.7570	p.E2524K	0.872	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	27	0	0	33	5	13.16	-	-	-	A	49694559	G	A	49694559	3	1	240	1	0	0	0	0	1	0	0	0	1538	1291	45	2	7588	2	BSN	3	49694559	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	913	49694559	148327871	952	19802										
RNF123	0	genome.wustl.edu	37	chr3	49739544	49739544	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactacaggtccagatcctGaagctgctgctggacaataa	10	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	49739544	49739544	G	A	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	silent	c.1524	p.L508	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	30	0	0	79	16	16.84	-	-	-	A	49739544	G	A	49739544	2	1	240	1	0	0	0	0	0	0	0	1	13519	1277	45	2		2	RNF123	3	49739544	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44985	49739544	148282886	953	19803										
SEMA3F	0	genome.wustl.edu	37	chr3	50220387	50220387	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaagtggagcacattcctGaaggcgcggctcgtctgctc	12	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50220387	50220387	G	A	SNP	SEMA3F	ENST00000002829	human	ensembl	69_37n	1	known	silent	c.954	p.L318	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3F	HGNC	ENSG00000001617	47	0	0	69	15	17.86	-	-	-	A	50220387	G	A	50220387	2	1	240	1	0	0	0	0	0	0	0	1	14117	1277	45	2		2	SEMA3F	3	50220387	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	480843	50220387	147802043	954	19804										
C3orf45	0	genome.wustl.edu	37	chr3	50324238	50324238	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagggttcctgctgctgctCgcgctgctggtgctcacttg	15	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50324238	50324238	C	T	SNP	C3orf45	ENST00000316436	human	ensembl	69_37n	1	known	silent	c.306	p.L102	0.001	NULL	NULL	-	no_errors	C3orf45	HGNC	ENSG00000179564	56	0	0	116	27	18.88	-	-	-	T	50324238	C	T	50324238	2	4	240	1	0	0	0	0	0	0	0	1	2251	871	31	1		1	C3orf45	3	50324238	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	103851	50324238	147698192	955	19805										
C3orf45	0	genome.wustl.edu	37	chr3	50324283	50324283	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgctcgcactcctggctgtCtacctgagcggtatggacgc	13	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50324283	50324283	C	G	SNP	C3orf45	ENST00000316436	human	ensembl	69_37n	1	known	silent	c.351	p.V117	1.000	NULL	NULL	-	no_errors	C3orf45	HGNC	ENSG00000179564	51	0	0	104	20	16.13	-	-	-	G	50324283	C	G	50324283	2	3	240	1	0	0	0	0	0	0	0	1	2251	900	32	2		2	C3orf45	3	50324283	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45	50324283	147698147	956	19806										
HYAL2	0	genome.wustl.edu	37	chr3	50357750	50357750	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgcacatcaaaggcattCaggtccagtggcaccttgag	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50357750	50357750	C	G	SNP	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	silent	c.171	p.L57	0.001	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	38	0	0	46	16	25.81	-	-	-	G	50357750	C	G	50357750	2	3	240	1	0	0	0	0	0	0	0	1	7518	813	29	2		2	HYAL2	3	50357750	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33467	50357750	147664680	957	19807										
TUSC2	0	genome.wustl.edu	37	chr3	50363862	50363862	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggtgacgattgtctcctCatagaactcgtgagccagat	10	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50363862	50363862	C	A	SNP	TUSC2	ENST00000232496	human	ensembl	69_37n	-1	known	nonsense	c.193	p.E65*	1.000	NULL	NULL	-	no_errors	TUSC2	HGNC	ENSG00000114383	35	0	0	52	9	14.75	-	-	-	A	50363862	C	A	50363862	4	1	240	1	0	0	0	0	0	1	0	0	16874	835	29	2	147	2	TUSC2	3	50363862	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6112	50363862	147658568	958	19808										
HEMK1	0	genome.wustl.edu	37	chr3	50608743	50608743	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagtgagtacatcgtggctCatgtccttggagccaaaaca	10	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	50608743	50608743	C	T	SNP	HEMK1	ENST00000232854	human	ensembl	69_37n	1	known	missense	c.208	p.H70Y	1.000	tigrfam_Release_fac_Glu-N5_MeTfrase,tigrfam_Modification_methylase_HemK	pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,prints_D21N6_MeTrfase,tigrfam_Release_fac_Glu-N5_MeTfrase,tigrfam_Modification_methylase_HemK	-	no_errors	HEMK1	HGNC	ENSG00000114735	57	0	0	68	18	20.93	-	-	-	T	50608743	C	T	50608743	3	4	240	1	0	0	0	0	1	0	0	0	7102	826	29	2	210	2	HEMK1	3	50608743	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	244881	50608743	147413687	959	19809										
DOCK3	0	genome.wustl.edu	37	chr3	51347742	51347742	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgggactggatggtaatgaGactgctcacaagcaagtaag	13	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51347742	51347742	G	C	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.3002	p.R1001T	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	136	0	0	189	53	21.9	-	-	-	C	51347742	G	C	51347742	3	2	240	1	0	0	0	0	1	0	0	0	4723	942	33	2	3112	2	DOCK3	3	51347742	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	738999	51347742	146674688	960	19810										
VPRBP	0	genome.wustl.edu	37	chr3	51450817	51450817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctcttccattaagtcatCttcatcatctgcctgcaaca	3	15	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51450817	51450817	C	T	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.2608	p.D870N	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	97	0	0	102	17	14.29	-	-	-	T	51450817	C	T	51450817	3	4	240	1	0	0	0	0	1	0	0	0	17282	913	32	2	588	2	VPRBP	3	51450817	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	103075	51450817	146571613	961	19811										
VPRBP	0	genome.wustl.edu	37	chr3	51475566	51475566	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgatctggatcagaagatgaGaaacccaacttttgcttggc	10	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51475566	51475566	G	C	SNP	VPRBP	ENST00000504652	human	ensembl	69_37n	-1	known	missense	c.861	p.F287L	1.000	NULL	superfamily_ARM-type_fold	-	no_stop_codon	VPRBP	HGNC	ENSG00000145041	195	0	0	201	37	15.55	-	-	-	C	51475566	G	C	51475566	3	2	240	1	0	0	0	0	1	0	0	0	17282	933	33	2	3571	2	VPRBP	3	51475566	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24749	51475566	146546864	962	19812										
IQCF2	0	genome.wustl.edu	37	chr3	51895685	51895685	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accatctaaggacaggccatGagggttcgattttgtgtaag	12	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51895685	51895685	G	A	SNP	IQCF2	ENST00000333127	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.350	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF2	HGNC	ENSG00000184345	79	0	0	75	22	22.68	-	-	-	A	51895685	G	A	51895685	3	1	240	1	0	0	0	0	1	0	0	0	7862	1290	45	2	5	2	IQCF2	3	51895685	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	420119	51895685	146126745	963	19813										
RRP9	0	genome.wustl.edu	37	chr3	51969380	51969380	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggccatagaagacaagctGggactcctcggggatcttcc	13	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51969380	51969380	G	A	SNP	RRP9	ENST00000232888	human	ensembl	69_37n	-1	known	nonsense	c.949	p.Q317*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RRP9	HGNC	ENSG00000114767	22	0	0	22	29	56.86	-	-	-	A	51969380	G	A	51969380	4	1	240	1	0	0	0	0	0	1	0	0	13777	1357	47	4	502	4	RRP9	3	51969380	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73695	51969380	146053050	964	19814										
PARP3	0	genome.wustl.edu	37	chr3	51979013	51979013	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccactcccctgtccccctaGatgtgaagaagatgcccctg	8	17	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	51979013	51979013	G	A	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	splice_site	c.656-1	e6-1	1.000	-	-	-	no_errors	PARP3	HGNC	ENSG00000041880	38	0	0	30	12	28.57	-	-	-	A	51979013	G	A	51979013	5	1	240	1	0	0	0	0	0	0	1	0	11535	956	33	2	677	2	PARP3	3	51979013	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9633	51979013	146043417	965	19815										
ALAS1	0	genome.wustl.edu	37	chr3	52236561	52236561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaggtccaacagactcctGatggatcccagcagagtcca	9	14	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52236561	52236561	G	A	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	missense	c.238	p.D80N	0.520	NULL	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	41	0	0	34	13	27.66	-	-	-	A	52236561	G	A	52236561	3	1	240	1	0	0	0	0	1	0	0	0	484	1290	45	2	244	2	ALAS1	3	52236561	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	257548	52236561	145785869	966	19816										
DNAH1	0	genome.wustl.edu	37	chr3	52406972	52406972	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttcttcatcgatgacctGaacatgccggccctggagac	9	13	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52406972	52406972	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.6888	p.L2296	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	48	0	0	44	22	33.33	-	-	-	A	52406972	G	A	52406972	2	1	240	1	0	0	0	0	0	0	0	1	4633	1277	45	2		2	DNAH1	3	52406972	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	170411	52406972	145615458	967	19817										
PHF7	0	genome.wustl.edu	37	chr3	52456828	52456828	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcccacggaacccacaggGactgctcctctcttagatct	8	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52456828	52456828	G	C	SNP	PHF7	ENST00000327906	human	ensembl	69_37n	1	known	missense	c.850	p.D284H	0.983	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_RING	-	no_errors	PHF7	HGNC	ENSG00000010318	71	0	0	87	23	20.91	-	-	-	C	52456828	G	C	52456828	3	2	240	1	0	0	0	0	1	0	0	0	11913	1174	41	2	884	2	PHF7	3	52456828	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49856	52456828	145565602	968	19818										
NISCH	0	genome.wustl.edu	37	chr3	52505964	52505964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgacctcgggcacatcctgGacttcacctgtcgccttaag	9	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52505964	52505964	G	A	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	missense	c.544	p.D182N	1.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	21	0	0	24	12	33.33	-	-	-	A	52505964	G	A	52505964	3	1	240	1	0	0	0	0	1	0	0	0	10504	1174	41	2	562	2	NISCH	3	52505964	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49136	52505964	145516466	969	19819										
PBRM1	0	genome.wustl.edu	37	chr3	52621381	52621381	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttaccttgacaaacatGaccacacacttgcctagaat	4	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52621381	52621381	G	A	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	silent	c.3111	p.V1037	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	163	0	0	161	21	11.54	-	-	-	A	52621381	G	A	52621381	2	1	240	1	0	0	0	0	0	0	0	1	11564	1277	45	2		2	PBRM1	3	52621381	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	115417	52621381	145401049	970	19820										
PBRM1	0	genome.wustl.edu	37	chr3	52621452	52621452	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcttaaaaacttctttttCtagaaattttcgtgtagcca	4	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52621452	52621452	C	G	SNP	PBRM1	ENST00000394830	human	ensembl	69_37n	-1	known	splice_site	c.2966-1	e19-1	1.000	-	-	-	no_errors	PBRM1	HGNC	ENSG00000163939	124	0	0	114	22	16.18	-	-	-	G	52621452	C	G	52621452	5	3	240	1	0	0	0	0	0	0	1	0	11564	927	32	2	1908	2	PBRM1	3	52621452	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71	52621452	145400978	971	19821										
GNL3	0	genome.wustl.edu	37	chr3	52728250	52728250	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatcttggataaaatcattGaagaggatgatgcttatgac	9	4	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52728250	52728250	G	A	SNP	GNL3	ENST00000418458	human	ensembl	69_37n	1	known	missense	c.1609	p.E537K	0.000	NULL	pfam_Gnl3_N_dom,pfam_GTP_binding_domain	-	no_errors	GNL3	HGNC	ENSG00000163938	70	0	0	76	10	11.63	-	-	-	A	52728250	G	A	52728250	3	1	240	1	0	0	0	0	1	0	0	0	6589	1291	45	2	1667	2	GNL3	3	52728250	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106798	52728250	145294180	972	19822										
SFMBT1	0	genome.wustl.edu	37	chr3	52964402	52964402	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggggtctacagcttccaaTttcatgtttacagagaatgt	9	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	52964402	52964402	T	A	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	missense	c.840	p.K280N	0.992	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	61	0	0	51	23	31.08	-	-	-	A	52964402	T	A	52964402	3	1	240	1	0	0	0	0	1	0	0	0	14245	1490	52	5	1816	5	SFMBT1	3	52964402	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	236152	52964402	145058028	973	19823										
RFT1	0	genome.wustl.edu	37	chr3	53138048	53138048	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagccaaaaacagtgatggtCaggccggccagcagggccag	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	53138048	53138048	C	T	SNP	RFT1	ENST00000296292	human	ensembl	69_37n	-1	known	silent	c.1023	p.L341	1.000	pfam_RFT1	pfam_RFT1	-	no_errors	RFT1	HGNC	ENSG00000163933	45	0	0	33	14	29.79	-	-	-	T	53138048	C	T	53138048	2	4	240	1	0	0	0	0	0	0	0	1	13340	813	29	2		2	RFT1	3	53138048	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	173646	53138048	144884382	974	19824										
CACNA1D	0	genome.wustl.edu	37	chr3	53809980	53809980	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggaagctctgtgaccctGagtcagattacaaccccggg	12	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	53809980	53809980	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.4330	p.E1444K	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	127	0	0	115	45	28.12	-	-	-	A	53809980	G	A	53809980	3	1	240	1	0	0	0	0	1	0	0	0	2566	1291	45	2	4580	2	CACNA1D	3	53809980	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	671932	53809980	144212450	975	19825										
IL17RB	0	genome.wustl.edu	37	chr3	53894240	53894240	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctggtggcagggatctatCtaatgtggaggcacggtaag	16	6	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	53894240	53894240	C	G	SNP	IL17RB	ENST00000288167	human	ensembl	69_37n	1	known	missense	c.931	p.L311V	0.008	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736	89	0	0	69	13	15.85	-	-	-	G	53894240	C	G	53894240	3	3	240	1	0	0	0	0	1	0	0	0	7694	912	32	2	969	2	IL17RB	3	53894240	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	84260	53894240	144128190	976	19826										
SELK	0	genome.wustl.edu	37	chr3	53925802	53925802	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgctctcaacttaccgttcGagatgtaaaccatcttgtcc	6	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	53925802	53925802	G	C	SNP	SELK	ENST00000541726	human	ensembl	69_37n	-1	known	missense	c.14	p.S5W	1.000	pfam_Se_SelK/SelG	pfam_Se_SelK/SelG	-	no_errors	RP11-884K10.5	Clone_based_vega_gene	ENSG00000113811	97	0	0	62	16	20.51	-	-	-	C	53925802	G	C	53925802	3	2	240	1	0	0	0	0	1	0	0	0	14103	1059	37	3	290	3	SELK	3	53925802	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31562	53925802	144096628	977	19827										
CACNA2D3	0	genome.wustl.edu	37	chr3	54354556	54354556	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcaaagaacatggaagagAtgtttcacaagaagtctgag	12	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	54354556	54354556	A	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.292	p.M98L	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	77	0	0	92	18	16.36	-	-	-	T	54354556	A	T	54354556	3	4	240	1	0	0	0	0	1	0	0	0	2575	333	12	5	302	5	CACNA2D3	3	54354556	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	428754	54354556	143667874	978	19828										
ARHGEF3	0	genome.wustl.edu	37	chr3	56771351	56771351	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattcaccagtcttggtgttGatttctgccacaattccctg	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	56771351	56771351	G	C	SNP	ARHGEF3	ENST00000338458	human	ensembl	69_37n	-1	known	missense	c.999	p.I333M	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947	48	0	0	66	17	20.48	-	-	-	C	56771351	G	C	56771351	3	2	240	1	0	0	0	0	1	0	0	0	906	1280	45	2	689	2	ARHGEF3	3	56771351	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2416795	56771351	141251079	979	19829										
ARHGEF3	0	genome.wustl.edu	37	chr3	56789060	56789060	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctgattgacgcacacatcGaaggtctcactccacagctt	7	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	56789060	56789060	G	A	SNP	ARHGEF3	ENST00000465659	human	ensembl	69_37n	-1	known	nonsense	c.475	p.R159*	0.998	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGEF3	HGNC	ENSG00000163947	80	0	0	86	22	20.37	-	-	-	A	56789060	G	A	56789060	4	1	240	1	0	0	0	0	0	1	0	0	906	1049	37	1	1288	1	ARHGEF3	3	56789060	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17709	56789060	141233370	980	19830										
IL17RD	0	genome.wustl.edu	37	chr3	57144296	57144296	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgtcttccctccgacttCagctcctccagtattacccg	5	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	57144296	57144296	C	A	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	silent	c.354	p.L118	1.000	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	110	0	0	132	28	17.5	-	-	-	A	57144296	C	A	57144296	2	1	240	1	0	0	0	0	0	0	0	1	7696	813	29	2		2	IL17RD	3	57144296	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	355236	57144296	140878134	981	19831										
ASB14	0	genome.wustl.edu	37	chr3	57321935	57321935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtattcatttacctgcaaGaagaggagaattgccttcga	9	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	57321935	57321935	G	A	SNP	ASB14	ENST00000389601	human	ensembl	69_37n	-1	known	missense	c.466	p.L156F	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB14	HGNC	ENSG00000239388	83	0	0	71	17	19.32	-	-	-	A	57321935	G	A	57321935	3	1	240	1	0	0	0	0	1	0	0	0	1022	942	33	2	1356	2	ASB14	3	57321935	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	177639	57321935	140700495	982	19832										
DNAH12	0	genome.wustl.edu	37	chr3	57443481	57443481	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgatcacatcgtgaacactCcggagcattaggtcttccac	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	57443481	57443481	C	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	silent	c.3234	p.R1078	0.993	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	42	0	0	49	13	20.97	-	-	-	G	57443481	C	G	57443481	2	3	240	1	0	0	0	0	0	0	0	1	4636	842	30	2		2	DNAH12	3	57443481	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	121546	57443481	140578949	983	19833										
SLMAP	0	genome.wustl.edu	37	chr3	57898407	57898407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtgaggaccagcagagaGaagaagcaacaaggttgcaa	14	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	57898407	57898407	G	C	SNP	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	missense	c.1948	p.E650Q	1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	46	0	0	42	7	14.29	-	-	-	C	57898407	G	C	57898407	3	2	240	1	0	0	0	0	1	0	0	0	14838	943	33	2	1963	2	SLMAP	3	57898407	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	454926	57898407	140124023	984	19834										
ACOX2	0	genome.wustl.edu	37	chr3	58520106	58520106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtaagcgtagcctaattCacgaccatcttctaaccaac	5	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	58520106	58520106	C	T	SNP	ACOX2	ENST00000302819	human	ensembl	69_37n	-1	known	missense	c.304	p.E102K	0.300	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306	47	0	0	63	21	25	-	-	-	T	58520106	C	T	58520106	3	4	240	1	0	0	0	0	1	0	0	0	159	835	29	2	1793	2	ACOX2	3	58520106	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	621699	58520106	139502324	985	19835										
C3orf67	0	genome.wustl.edu	37	chr3	58728291	58728291	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcctcttccacactgaggtCttcttcacctgtggggaagg	11	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	58728291	58728291	C	G	SNP	C3orf67	ENST00000482387	human	ensembl	69_37n	-1	known	missense	c.1966	p.D656H	0.994	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689	53	0	0	63	9	12.5	-	-	-	G	58728291	C	G	58728291	3	3	240	1	0	0	0	0	1	0	0	0	2261	913	32	2	107	2	C3orf67	3	58728291	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	208185	58728291	139294139	986	19836										
C3orf67	0	genome.wustl.edu	37	chr3	58849331	58849331	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcctctgattgggtgtCtctgcttgtcacactgttat	8	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	58849331	58849331	C	G	SNP	C3orf67	ENST00000482387	human	ensembl	69_37n	-1	known	missense	c.1171	p.D391H	0.094	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689	97	0	0	103	15	12.71	-	-	-	G	58849331	C	G	58849331	3	3	240	1	0	0	0	0	1	0	0	0	2261	913	32	2	540	2	C3orf67	3	58849331	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	121040	58849331	139173099	987	19837										
PTPRG	0	genome.wustl.edu	37	chr3	62216898	62216898	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttgttttttgtccatttaGagggtgtaacaaaataaagt	8	3	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62216898	62216898	G	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	splice_site	c.2289-1	e14-1	1.000	-	-	-	no_errors	PTPRG	HGNC	ENSG00000144724	187	0	0	152	32	17.3	-	-	-	C	62216898	G	C	62216898	5	2	240	1	0	0	0	0	0	0	1	0	12885	956	33	2	2342	2	PTPRG	3	62216898	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3367567	62216898	135805532	988	19838										
PTPRG	0	genome.wustl.edu	37	chr3	62254775	62254775	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaacattattgtcacgctGaagagcacaaaaatacatgc	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62254775	62254775	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	silent	c.2940	p.L980	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	65	0	0	77	18	18.95	-	-	-	A	62254775	G	A	62254775	2	1	240	1	0	0	0	0	0	0	0	1	12885	1277	45	2		2	PTPRG	3	62254775	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37877	62254775	135767655	989	19839										
FEZF2	0	genome.wustl.edu	37	chr3	62355759	62355759	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagggcaaggcagtagctctCagctctgcactgtcctagtc	11	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62355759	62355759	C	T	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	silent	c.1379	p.*460	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	51	0	0	56	32	36.36	-	-	-	T	62355759	C	T	62355759	2	4	240	1	0	0	0	0	0	0	0	1	5872	837	29	2		2	FEZF2	3	62355759	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100984	62355759	135666671	990	19840										
FEZF2	0	genome.wustl.edu	37	chr3	62355847	62355847	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgcacatgtttctttaagtCaaagtttctgcaaaaccctt	6	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62355847	62355847	C	G	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	missense	c.1291	p.D431H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	115	0	0	122	55	31.07	-	-	-	G	62355847	C	G	62355847	3	3	240	1	0	0	0	0	1	0	0	0	5872	826	29	2	92	2	FEZF2	3	62355847	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	88	62355847	135666583	991	19841										
FEZF2	0	genome.wustl.edu	37	chr3	62357788	62357788	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgcctccgcgctcggcagtCagggccgagttttccttcag	12	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62357788	62357788	C	G	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	18	0	0	13	9	40.91	-	-	-	G	62357788	C	G	62357788	2	3	240	1	0	0	0	0	0	0	0	1	5872	813	29	2		2	FEZF2	3	62357788	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1941	62357788	135664642	992	19842										
CADPS	0	genome.wustl.edu	37	chr3	62463956	62463956	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttttgacacaagattcgatCatgtcacttgccatcaactt	5	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	62463956	62463956	C	G	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3309	p.M1103I	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	153	0	0	180	35	16.28	-	-	-	G	62463956	C	G	62463956	3	3	240	1	0	0	0	0	1	0	0	0	2595	826	29	2	784	2	CADPS	3	62463956	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106168	62463956	135558474	993	19843										
ADAMTS9	0	genome.wustl.edu	37	chr3	64592688	64592688	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcattgtcatctaccactGacatataagtcccaatgatg	6	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	64592688	64592688	G	A	SNP	ADAMTS9	ENST00000481060	human	ensembl	69_37n	-1	known	nonsense	c.589	p.Q197*	0.994	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAMTS9	HGNC	ENSG00000163638	120	0	0	123	28	18.54	-	-	-	A	64592688	G	A	64592688	4	1	240	1	0	0	0	0	0	1	0	0	273	1294	45	2	2453	2	ADAMTS9	3	64592688	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2128732	64592688	133429742	994	19844										
ADAMTS9	0	genome.wustl.edu	37	chr3	64640042	64640042	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactcacacatggcccagctCatgggcgatcgtaaaagctg	10	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	64640042	64640042	C	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	nonsense	c.1303	p.E435*	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	110	0	0	63	42	40	-	-	-	A	64640042	C	A	64640042	4	1	240	1	0	0	0	0	0	1	0	0	273	835	29	2	4632	2	ADAMTS9	3	64640042	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	47354	64640042	133382388	995	19845										
MAGI1	0	genome.wustl.edu	37	chr3	65342189	65342189	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctctgtcctctctgttcCttttgtccagggaccgctct	9	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	65342189	65342189	C	G	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.4253	p.R1418T	0.115	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	145	0	0	106	14	11.67	-	-	-	G	65342189	C	G	65342189	3	3	240	1	0	0	0	0	1	0	0	0	9261	681	24	4	139	4	MAGI1	3	65342189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	702147	65342189	132680241	996	19846										
MAGI1	0	genome.wustl.edu	37	chr3	65342317	65342317	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctctgctccaggagtctCtccagagaccgtctccgccg	9	18	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	65342317	65342317	C	G	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.4125	p.E1375D	0.092	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	55	0	0	30	16	34.78	-	-	-	G	65342317	C	G	65342317	3	3	240	1	0	0	0	0	1	0	0	0	9261	912	32	2	267	2	MAGI1	3	65342317	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	128	65342317	132680113	997	19847										
KBTBD8	0	genome.wustl.edu	37	chr3	67054247	67054247	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcttggaatgactgcttctGaaatgatcatatgttttgat	10	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	67054247	67054247	G	A	SNP	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	missense	c.856	p.E286K	1.000	pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	61	0	0	59	12	16.9	-	-	-	A	67054247	G	A	67054247	3	1	240	1	0	0	0	0	1	0	0	0	8053	1291	45	2	866	2	KBTBD8	3	67054247	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1711930	67054247	130968183	998	19848										
TMF1	0	genome.wustl.edu	37	chr3	69097500	69097500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtcgttgtgattttgctGgaggttttgataccactgga	13	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	69097500	69097500	G	A	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	missense	c.356	p.P119L	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	234	0	0	214	46	17.62	-	-	-	A	69097500	G	A	69097500	3	1	240	1	0	0	0	0	1	0	0	0	16323	1348	47	4	2989	4	TMF1	3	69097500	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2043253	69097500	128924930	999	19849										
LMOD3	0	genome.wustl.edu	37	chr3	69168802	69168802	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggtctgtctggtttcctGaaggccttgtacttaccttc	9	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	69168802	69168802	G	A	SNP	LMOD3	ENST00000420581	human	ensembl	69_37n	-1	known	missense	c.704	p.S235L	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380	112	0	0	132	47	26.26	-	-	-	A	69168802	G	A	69168802	3	1	240	1	0	0	0	0	1	0	0	0	8914	1294	45	2	986	2	LMOD3	3	69168802	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	71302	69168802	128853628	1000	19850										
FRMD4B	0	genome.wustl.edu	37	chr3	69236982	69236982	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctgaaatggattcgctCaataccaagagacttggggg	11	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	69236982	69236982	C	G	SNP	FRMD4B	ENST00000398540	human	ensembl	69_37n	-1	known	missense	c.1858	p.E620Q	0.999	NULL	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD4B	HGNC	ENSG00000114541	76	0	0	82	18	16.22	-	-	-	G	69236982	C	G	69236982	3	3	240	1	0	0	0	0	1	0	0	0	6101	835	29	2	1266	2	FRMD4B	3	69236982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68180	69236982	128785448	1001	19851										
MITF	0	genome.wustl.edu	37	chr3	69928332	69928332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagcctccgataagctcctCcagtatgacatcacgcatct	6	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	69928332	69928332	C	T	SNP	MITF	ENST00000448226	human	ensembl	69_37n	1	known	missense	c.152	p.S51F	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MITF	HGNC	ENSG00000187098	42	0	0	54	14	20.59	-	-	-	T	69928332	C	T	69928332	3	4	240	1	0	0	0	0	1	0	0	0	9667	855	30	2	323	2	MITF	3	69928332	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	691350	69928332	128094098	1002	19852										
RYBP	0	genome.wustl.edu	37	chr3	72427764	72427764	+	Missense_Mutation	SNP	C	C	G													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaactgctgtgcagtgctCctgtccacgtttttcagccg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	72427764	72427764	C	G	SNP	RYBP	ENST00000477973	human	ensembl	69_37n	-1	known	missense	c.724	p.E242Q	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RYBP	HGNC	ENSG00000163602	84	0	0	91	26	22.22	-	-	-	G	72427764	C	G	72427764	3	3	240	1	0	0	0	0	1	0	0	0	13852	854	30	2	231	2	RYBP	3	72427764	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2499432	72427764	125594666	1003	19853	206	2								
RYBP	0	genome.wustl.edu	37	chr3	72427768	72427768	+	Silent	SNP	T	T	C													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgctgtgcagtgctcctgTccacgtttttcagccggggc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	72427768	72427768	T	C	SNP	RYBP	ENST00000477973	human	ensembl	69_37n	-1	known	silent	c.720	p.G240	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RYBP	HGNC	ENSG00000163602	83	0	0	99	14	12.39	-	-	-	C	72427768	T	C	72427768	2	2	240	1	0	0	0	0	0	0	0	1	13852	1667	58	5		5	RYBP	3	72427768	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	4	72427768	125594662	1004	19854	206	2								
SHQ1	0	genome.wustl.edu	37	chr3	72799653	72799653	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttctgcgtactccaccatCaacaataagaaaggcactgc	7	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	72799653	72799653	C	T	SNP	SHQ1	ENST00000325599	human	ensembl	69_37n	-1	known	missense	c.1516	p.D506N	0.000	NULL	pfam_SHQ1,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	SHQ1	HGNC	ENSG00000144736	54	0	0	96	14	12.73	-	-	-	T	72799653	C	T	72799653	3	4	240	1	0	0	0	0	1	0	0	0	14381	826	29	2	221	2	SHQ1	3	72799653	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	371885	72799653	125222777	1005	19855										
SHQ1	0	genome.wustl.edu	37	chr3	72891482	72891482	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggattttcttggtgccagaaGagcagttaacatgttcagcc	11	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	72891482	72891482	G	C	SNP	SHQ1	ENST00000325599	human	ensembl	69_37n	-1	known	missense	c.280	p.L94V	1.000	NULL	pfam_SHQ1,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	SHQ1	HGNC	ENSG00000144736	227	0	0	217	27	11.07	-	-	-	C	72891482	G	C	72891482	3	2	240	1	0	0	0	0	1	0	0	0	14381	942	33	2	1489	2	SHQ1	3	72891482	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	91829	72891482	125130948	1006	19856										
PPP4R2	0	genome.wustl.edu	37	chr3	73114211	73114211	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaagcatcatcttcatctCaggataaagacaaagatagc	7	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	73114211	73114211	C	T	SNP	PPP4R2	ENST00000356692	human	ensembl	69_37n	1	known	nonsense	c.847	p.Q283*	1.000	NULL	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605	67	0	0	36	29	44.62	-	-	-	T	73114211	C	T	73114211	4	4	240	1	0	0	0	0	0	1	0	0	12481	827	29	2	877	2	PPP4R2	3	73114211	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	222729	73114211	124908219	1007	19857										
CNTN3	0	genome.wustl.edu	37	chr3	74350693	74350693	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtcttcccatcgatgacctCaggcactacaaaggaatatt	7	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	74350693	74350693	C	T	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.1951	p.E651K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	116	0	0	136	18	11.69	-	-	-	T	74350693	C	T	74350693	3	4	240	1	0	0	0	0	1	0	0	0	3672	835	29	2	1167	2	CNTN3	3	74350693	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1236482	74350693	123671737	1008	19858										
EPHA6	0	genome.wustl.edu	37	chr3	96706413	96706413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggaatcagatgagtcccaCggaattaaattcaagccaaa	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	96706413	96706413	C	T	SNP	EPHA6	ENST00000506569	human	ensembl	69_37n	1	putative	missense	c.523	p.R175W	0.975	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPHA6	HGNC	ENSG00000080224	54	0	0	77	13	14.44	-	-	-	T	96706413	C	T	96706413	3	4	240	1	0	0	0	0	1	0	0	0	5208	535	19	1	700	1	EPHA6	3	96706413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22355720	96706413	101316017	1009	19859										
OR5H6	0	genome.wustl.edu	37	chr3	97983947	97983947	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactatggccccctcaccttCaaatatctgggctctgcatc	6	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	97983947	97983947	C	T	SNP	OR5H6	ENST00000383696	human	ensembl	69_37n	1	known	silent	c.819	p.F273	0.028	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	90	0	0	107	17	13.71	-	-	-	T	97983947	C	T	97983947	2	4	240	1	0	0	0	0	0	0	0	1	11236	825	29	2		2	OR5H6	3	97983947	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1277534	97983947	100038483	1010	19860										
GPR15	0	genome.wustl.edu	37	chr3	98250987	98250987	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacacctctgtcttccttcCagtcttttacacagctgtgt	5	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	98250987	98250987	C	G	SNP	GPR15	ENST00000284311	human	ensembl	69_37n	1	known	missense	c.110	p.P37R	0.999	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165	72	0	0	76	19	20	-	-	-	G	98250987	C	G	98250987	3	3	240	1	0	0	0	0	1	0	0	0	6705	594	21	4	112	4	GPR15	3	98250987	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267040	98250987	99771443	1011	19861										
TBC1D23	0	genome.wustl.edu	37	chr3	100002473	100002473	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctttcagtgccagaggaGaaggcagcagaattactttt	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	100002473	100002473	G	A	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	silent	c.294	p.E98	0.827	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	124	0	0	113	25	18.12	-	-	-	A	100002473	G	A	100002473	2	1	240	1	0	0	0	0	0	0	0	1	15705	933	33	2		2	TBC1D23	3	100002473	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1751486	100002473	98019957	1012	19862										
GPR128	0	genome.wustl.edu	37	chr3	100413810	100413810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgagtactgaggaaatcacaCtctctgaaagtgacaatgca	9	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	100413810	100413810	C	T	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	missense	c.2359	p.L787F	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	64	0	0	90	12	11.76	-	-	-	T	100413810	C	T	100413810	3	4	240	1	0	0	0	0	1	0	0	0	6691	565	20	4	2421	4	GPR128	3	100413810	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	411337	100413810	97608620	1013	19863										
ABI3BP	0	genome.wustl.edu	37	chr3	100570746	100570746	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaatctgatatctcaggctCatctgatgttgtagggcttg	12	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	100570746	100570746	C	G	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.1198	p.E400Q	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	75	0	0	88	18	16.98	-	-	-	G	100570746	C	G	100570746	3	3	240	1	0	0	0	0	1	0	0	0	91	835	29	2	2121	2	ABI3BP	3	100570746	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	156936	100570746	97451684	1014	19864										
ABI3BP	0	genome.wustl.edu	37	chr3	100581182	100581182	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggctgcagaactttggaatCttcagatattttagctgtag	10	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	100581182	100581182	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.1132	p.D378N	0.949	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	111	0	0	104	34	24.64	-	-	-	T	100581182	C	T	100581182	3	4	240	1	0	0	0	0	1	0	0	0	91	913	32	2	2191	2	ABI3BP	3	100581182	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10436	100581182	97441248	1015	19865										
ABI3BP	0	genome.wustl.edu	37	chr3	100617686	100617686	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggacaggaagaccgagctCggtgtcagagtgccaaccac	13	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	100617686	100617686	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	silent	c.402	p.P134	0.994	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	43	0	0	56	9	13.85	-	-	-	T	100617686	C	T	100617686	2	4	240	1	0	0	0	0	0	0	0	1	91	871	31	1		1	ABI3BP	3	100617686	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36504	100617686	97404744	1016	19866										
CEP97	0	genome.wustl.edu	37	chr3	101447748	101447748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagacaataatatatcccaGataggtgatctatctaaatt	5	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	101447748	101447748	G	C	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	1	known	missense	c.414	p.Q138H	0.998	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	161	0	0	175	31	15.05	-	-	-	C	101447748	G	C	101447748	3	2	240	1	0	0	0	0	1	0	0	0	3292	933	33	2	428	2	CEP97	3	101447748	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	830062	101447748	96574682	1017	19867										
CD47	0	genome.wustl.edu	37	chr3	107798886	107798886	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaccttctctggttaattCtgttacttcacaagtgtagt	6	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	107798886	107798886	C	G	SNP	CD47	ENST00000361309	human	ensembl	69_37n	-1	known	missense	c.352	p.E118Q	1.000	pfam_CD47_Vset,pfscan_Ig-like	pfam_CD47_Vset,pfam_CD47_TM,pfscan_Ig-like	-	no_errors	CD47	HGNC	ENSG00000196776	165	0	0	177	38	17.67	-	-	-	G	107798886	C	G	107798886	3	3	240	1	0	0	0	0	1	0	0	0	3048	922	32	2	663	2	CD47	3	107798886	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6351138	107798886	90223544	1018	19868										
HHLA2	0	genome.wustl.edu	37	chr3	108074187	108074187	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaatgtacaattgaaaattCactgctgaagcaaacatgga	8	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108074187	108074187	C	T	SNP	HHLA2	ENST00000357759	human	ensembl	69_37n	1	known	missense	c.644	p.S215L	0.000	pfam_Ig_C1-set,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	HHLA2	HGNC	ENSG00000114455	55	0	0	53	18	25.35	-	-	-	T	108074187	C	T	108074187	3	4	240	1	0	0	0	0	1	0	0	0	7146	838	29	2	654	2	HHLA2	3	108074187	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	275301	108074187	89948243	1019	19869										
MYH15	0	genome.wustl.edu	37	chr3	108133089	108133089	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctactcacttggcatcctCcaagtcttctgttctctgga	6	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108133089	108133089	C	G	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.4195	p.E1399Q	1.000	pfam_Myosin_tail,superfamily_Lambda_DNA-bd_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	148	0	0	159	45	22.06	-	-	-	G	108133089	C	G	108133089	3	3	240	1	0	0	0	0	1	0	0	0	10106	864	30	2	1693	2	MYH15	3	108133089	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	58902	108133089	89889341	1020	19870										
MYH15	0	genome.wustl.edu	37	chr3	108178212	108178212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaatctagttcttacctgGtattttgttcacattgggat	8	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108178212	108178212	G	A	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.2077	p.P693S	0.987	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	129	0	0	128	31	19.5	-	-	-	A	108178212	G	A	108178212	3	1	240	1	0	0	0	0	1	0	0	0	10106	1261	44	4	3859	4	MYH15	3	108178212	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45123	108178212	89844218	1021	19871										
KIAA1524	0	genome.wustl.edu	37	chr3	108276102	108276102	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaggattttgtcagtatttCatgttcttcagccacagact	8	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108276102	108276102	C	T	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	missense	c.2173	p.E725K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	164	0	0	145	28	16.18	-	-	-	T	108276102	C	T	108276102	3	4	240	1	0	0	0	0	1	0	0	0	8291	835	29	2	564	2	KIAA1524	3	108276102	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	97890	108276102	89746328	1022	19872										
DZIP3	0	genome.wustl.edu	37	chr3	108344740	108344740	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgatgaagatgatgatcCaagaaaatgaaatttgtgaa	11	2	0	8			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108344740	108344740	C	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	nonsense	c.505	p.Q169*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	134	0	0	126	26	17.11	-	-	-	T	108344740	C	T	108344740	4	4	240	1	0	0	0	0	0	1	0	0	4900	595	21	4	527	4	DZIP3	3	108344740	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68638	108344740	89677690	1023	19873										
DZIP3	0	genome.wustl.edu	37	chr3	108403129	108403129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacccatacttactgttcctCaaatgcctgcagtttgcccg	7	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108403129	108403129	C	G	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.2950	p.Q984E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	88	0	0	69	17	19.77	-	-	-	G	108403129	C	G	108403129	3	3	240	1	0	0	0	0	1	0	0	0	4900	827	29	2	3052	2	DZIP3	3	108403129	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	58389	108403129	89619301	1024	19874										
GUCA1C	0	genome.wustl.edu	37	chr3	108626926	108626926	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagatttggaggagtctgtCtccatgtctggctgcttccc	13	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108626926	108626926	C	T	SNP	GUCA1C	ENST00000261047	human	ensembl	69_37n	-1	known	silent	c.573	p.E191	0.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472	118	0	0	97	21	17.8	-	-	-	T	108626926	C	T	108626926	2	4	240	1	0	0	0	0	0	0	0	1	6941	912	32	2		2	GUCA1C	3	108626926	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	223797	108626926	89395504	1025	19875										
MORC1	0	genome.wustl.edu	37	chr3	108724023	108724023	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttcataatttttgtttctGaaatatactctacatcagag	4	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	108724023	108724023	G	A	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.1907	p.S636L	0.027	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	135	0	0	120	25	17.24	-	-	-	A	108724023	G	A	108724023	3	1	240	1	0	0	0	0	1	0	0	0	9773	1294	45	2	1087	2	MORC1	3	108724023	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	97097	108724023	89298407	1026	19876										
CD200	0	genome.wustl.edu	37	chr3	112066509	112066509	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtcttctggaaggtccctCggtcagggattgaaaatagt	13	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	112066509	112066509	C	A	SNP	CD200	ENST00000473539	human	ensembl	69_37n	1	known	silent	c.601	p.R201	0.001	pfam_Immunoglobulin	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD200	HGNC	ENSG00000091972	104	0	0	107	28	20.74	-	-	-	A	112066509	C	A	112066509	2	1	240	1	0	0	0	0	0	0	0	1	3009	875	31	3		3	CD200	3	112066509	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3342486	112066509	85955921	1027	19877										
ATG3	0	genome.wustl.edu	37	chr3	112256647	112256647	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcataagtgatgtaaaggtCataagttctggtttgcaaaa	9	4	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	112256647	112256647	C	T	SNP	ATG3	ENST00000283290	human	ensembl	69_37n	-1	known	missense	c.601	p.D201N	1.000	NULL	pfam_Autophagy-rel_prot_3_N,pfam_Autophagy-rel_prot_3,pfam_Autophagy-rel_prot_3_C	-	no_errors	ATG3	HGNC	ENSG00000144848	178	0	0	158	59	27.19	-	-	-	T	112256647	C	T	112256647	3	4	240	1	0	0	0	0	1	0	0	0	1099	826	29	2	359	2	ATG3	3	112256647	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	190138	112256647	85765783	1028	19878										
BOC	0	genome.wustl.edu	37	chr3	112969482	112969482	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatcttgggctgcgtggtgGaacctccaaggatgaatgta	14	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	112969482	112969482	G	T	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	nonsense	c.178	p.E60*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	78	0	0	129	20	13.42	-	-	-	T	112969482	G	T	112969482	4	4	240	1	0	0	0	0	0	1	0	0	1486	1175	41	2	184	2	BOC	3	112969482	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	712835	112969482	85052948	1029	19879										
BOC	0	genome.wustl.edu	37	chr3	112969740	112969740	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctcatctctcccaccctGaagcccccaccattcatgct	3	21	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	112969740	112969740	G	A	SNP	BOC	ENST00000484034	human	ensembl	69_37n	1	putative	missense	c.436	p.E146K	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	15	0	0	16	7	30.43	-	-	-	A	112969740	G	A	112969740	3	1	240	1	0	0	0	0	1	0	0	0	1486	1305	45	2		2	BOC	3	112969740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	258	112969740	85052690	1030	19880										
BOC	0	genome.wustl.edu	37	chr3	112987229	112987229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcattgcctgccacctgcctGagagccaccccaaagcccag	8	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	112987229	112987229	G	C	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	missense	c.460	p.E154Q	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	72	0	0	85	17	16.67	-	-	-	C	112987229	G	C	112987229	3	2	240	1	0	0	0	0	1	0	0	0	1486	1291	45	2	470	2	BOC	3	112987229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17489	112987229	85035201	1031	19881										
WDR52	0	genome.wustl.edu	37	chr3	113027091	113027091	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctagattcttcttcacttGattcctcactctcctcatct	3	14	7	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	113027091	113027091	G	C	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	nonsense	c.4541	p.S1514*	1.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	134	0	0	120	23	16.08	-	-	-	C	113027091	G	C	113027091	4	2	240	1	0	0	0	0	0	1	0	0	17401	1294	45	2	1051	2	WDR52	3	113027091	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39862	113027091	84995339	1032	19882										
ATP6V1A	0	genome.wustl.edu	37	chr3	113503119	113503119	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgcactggtaaacccctctCtgtagagcttggtcctggca	10	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	113503119	113503119	C	T	SNP	ATP6V1A	ENST00000273398	human	ensembl	69_37n	1	known	missense	c.260	p.S87F	0.999	tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	105	0	0	100	48	32.43	-	-	-	T	113503119	C	T	113503119	3	4	240	1	0	0	0	0	1	0	0	0	1181	913	32	2	270	2	ATP6V1A	3	113503119	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	476028	113503119	84519311	1033	19883										
ZDHHC23	0	genome.wustl.edu	37	chr3	113672592	113672592	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagagacttgtgaaagaatCatggatacaatttctgatcg	9	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	113672592	113672592	C	G	SNP	ZDHHC23	ENST00000478793	human	ensembl	69_37n	1	known	missense	c.207	p.I69M	0.991	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC23	HGNC	ENSG00000184307	57	0	0	53	25	32.05	-	-	-	G	113672592	C	G	113672592	3	3	240	1	0	0	0	0	1	0	0	0	17710	816	29	2	213	2	ZDHHC23	3	113672592	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	169473	113672592	84349838	1034	19884										
ZDHHC23	0	genome.wustl.edu	37	chr3	113672814	113672814	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaccctgtttttcctgagCcttggactgttctctctggg	10	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	113672814	113672814	C	A	SNP	ZDHHC23	ENST00000478793	human	ensembl	69_37n	1	known	missense	c.429	p.S143R	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC23	HGNC	ENSG00000184307	112	0	0	106	88	45.36	-	-	-	A	113672814	C	A	113672814	3	1	240	1	0	0	0	0	1	0	0	0	17710	738	26	4	435	4	ZDHHC23	3	113672814	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	222	113672814	84349616	1035	19885										
KIAA1407	0	genome.wustl.edu	37	chr3	113684194	113684194	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccatgtccgaagggtgatCcagaggatcctcctttaaga	10	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	113684194	113684194	C	G	SNP	KIAA1407	ENST00000295878	human	ensembl	69_37n	-1	known	missense	c.2619	p.W873C	0.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617	45	0	0	59	22	27.16	-	-	-	G	113684194	C	G	113684194	3	3	240	1	0	0	0	0	1	0	0	0	8281	856	30	2	195	2	KIAA1407	3	113684194	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11380	113684194	84338236	1036	19886										
PLA1A	0	genome.wustl.edu	37	chr3	119325795	119325795	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggttcaatgccactctggGaaccaaactaattatccatg	8	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	119325795	119325795	G	C	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	missense	c.248	p.G83A	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	41	0	0	49	12	19.67	-	-	-	C	119325795	G	C	119325795	3	2	240	1	0	0	0	0	1	0	0	0	12062	1174	41	2	254	2	PLA1A	3	119325795	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5641601	119325795	78696635	1037	19887										
PLA1A	0	genome.wustl.edu	37	chr3	119331884	119331884	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctggaccccgctggacctGagtacaccagggccagtgtg	14	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	119331884	119331884	G	A	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	missense	c.583	p.E195K	0.986	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	41	0	0	44	10	18.52	-	-	-	A	119331884	G	A	119331884	3	1	240	1	0	0	0	0	1	0	0	0	12062	1291	45	2	601	2	PLA1A	3	119331884	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6089	119331884	78690546	1038	19888										
POPDC2	0	genome.wustl.edu	37	chr3	119367224	119367224	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagaggtgggtgtggcctGaggaggggacacagctggct	21	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	119367224	119367224	G	A	SNP	POPDC2	ENST00000341124	human	ensembl	69_37n	-1	known	nonsense	c.892	p.Q298*	0.001	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577	134	0	0	107	86	44.33	-	-	-	A	119367224	G	A	119367224	4	1	240	1	0	0	0	0	0	1	0	0	12329	1299	45	2	210	2	POPDC2	3	119367224	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35340	119367224	78655206	1039	19889										
C3orf15	0	genome.wustl.edu	37	chr3	119462951	119462951	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcctttgtcatgctggctGagcgccagcggcgggtacga	15	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	119462951	119462951	G	A	SNP	C3orf15	ENST00000273390	human	ensembl	69_37n	1	known	missense	c.1810	p.E604K	1.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	C3orf15	HGNC	ENSG00000183833	67	0	0	52	54	50.94	-	-	-	A	119462951	G	A	119462951	3	1	240	1	0	0	0	0	1	0	0	0	2229	1291	45	2	1864	2	C3orf15	3	119462951	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	95727	119462951	78559479	1040	19890										
GPR156	0	genome.wustl.edu	37	chr3	119886618	119886618	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggtttgctgatgacaaGagggggcggtggagagggaa	19	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	119886618	119886618	G	C	SNP	GPR156	ENST00000315843	human	ensembl	69_37n	-1	known	missense	c.1706	p.S569C	0.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	12	0	0	21	18	46.15	-	-	-	C	119886618	G	C	119886618	3	2	240	1	0	0	0	0	1	0	0	0	6711	942	33	2	742	2	GPR156	3	119886618	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	423667	119886618	78135812	1041	19891										
STXBP5L	0	genome.wustl.edu	37	chr3	120957891	120957891	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgcacagcatactttgcaGattgtcctccggatttgatt	8	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	120957891	120957891	G	C	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	missense	c.1258	p.D420H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	77	0	0	64	13	16.88	-	-	-	C	120957891	G	C	120957891	3	2	240	1	0	0	0	0	1	0	0	0	15448	942	33	2	1304	2	STXBP5L	3	120957891	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1071273	120957891	77064539	1042	19892										
FBXO40	0	genome.wustl.edu	37	chr3	121341694	121341694	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagacacaacaaaagcagctCtgccttcactttcacttgca	6	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	121341694	121341694	C	G	SNP	FBXO40	ENST00000338040	human	ensembl	69_37n	1	known	missense	c.1418	p.S473C	1.000	NULL	superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833	85	0	0	79	23	22.55	-	-	-	G	121341694	C	G	121341694	3	3	240	1	0	0	0	0	1	0	0	0	5795	913	32	2	1424	2	FBXO40	3	121341694	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	383803	121341694	76680736	1043	19893										
GOLGB1	0	genome.wustl.edu	37	chr3	121410644	121410644	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaattgagatcatccatatGacttctcaagcctcgtattt	6	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	121410644	121410644	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.7552	p.H2518Y	1.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	125	0	0	142	23	13.86	-	-	-	A	121410644	G	A	121410644	3	1	240	1	0	0	0	0	1	0	0	0	6614	1290	45	2	2263	2	GOLGB1	3	121410644	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	68950	121410644	76611786	1044	19894										
GOLGB1	0	genome.wustl.edu	37	chr3	121415658	121415658	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaatctggagttgccttaGctggtctccaatattctcat	8	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	121415658	121415658	G	C	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.3697	p.L1233V	0.458	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	136	0	0	177	31	14.9	-	-	-	C	121415658	G	C	121415658	3	2	240	1	0	0	0	0	1	0	0	0	6614	962	34	4	6122	4	GOLGB1	3	121415658	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5014	121415658	76606772	1045	19895										
GOLGB1	0	genome.wustl.edu	37	chr3	121417653	121417653	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaatttcctcttgagcttCtttcatttccaacaataaaa	3	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	121417653	121417653	C	G	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.1702	p.E568Q	1.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	57	0	0	66	15	18.52	-	-	-	G	121417653	C	G	121417653	3	3	240	1	0	0	0	0	1	0	0	0	6614	922	32	2	8117	2	GOLGB1	3	121417653	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1995	121417653	76604777	1046	19896										
SLC15A2	0	genome.wustl.edu	37	chr3	121649779	121649779	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatggtgtgtctgcttataGaactgtgcaaagaggagagt	13	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	121649779	121649779	G	C	SNP	SLC15A2	ENST00000489711	human	ensembl	69_37n	1	known	missense	c.1646	p.R549T	0.079	tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A2	HGNC	ENSG00000163406	171	0	0	180	52	22.41	-	-	-	C	121649779	G	C	121649779	3	2	240	1	0	0	0	0	1	0	0	0	14488	942	33	2	1716	2	SLC15A2	3	121649779	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	232126	121649779	76372651	1047	19897										
DTX3L	0	genome.wustl.edu	37	chr3	122288191	122288191	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtcagaaaacctgcattCtgtttgaatccaaggacagg	10	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	122288191	122288191	C	T	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	silent	c.1255	p.L419	0.003	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	26	0	0	45	14	23.73	-	-	-	T	122288191	C	T	122288191	2	4	240	1	0	0	0	0	0	0	0	1	4831	912	32	2		2	DTX3L	3	122288191	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	638412	122288191	75734239	1048	19898										
PARP14	0	genome.wustl.edu	37	chr3	122419874	122419874	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtggtgaatgcatctaatGaggaccttaagcattatggt	12	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	122419874	122419874	G	A	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.2473	p.E825K	0.081	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	50	0	0	50	9	15.25	-	-	-	A	122419874	G	A	122419874	3	1	240	1	0	0	0	0	1	0	0	0	11531	1291	45	2	2495	2	PARP14	3	122419874	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	131683	122419874	75602556	1049	19899										
SEMA5B	0	genome.wustl.edu	37	chr3	122634667	122634667	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggctcatgttggagctgtCctcgagtgtgctgcaacgtt	14	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	122634667	122634667	C	G	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	missense	c.1921	p.D641H	1.000	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	112	0	0	115	23	16.67	-	-	-	G	122634667	C	G	122634667	3	3	240	1	0	0	0	0	1	0	0	0	14126	855	30	2	1740	2	SEMA5B	3	122634667	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	214793	122634667	75387763	1050	19900										
PDIA5	0	genome.wustl.edu	37	chr3	122808040	122808040	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgccatcatggctgtcctCtgcaaaggtctcctcgctca	8	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	122808040	122808040	C	T	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.68	p.S23F	0.971	NULL	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	75	0	0	76	34	30.63	-	-	-	T	122808040	C	T	122808040	3	4	240	1	0	0	0	0	1	0	0	0	11744	913	32	2	74	2	PDIA5	3	122808040	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	173373	122808040	75214390	1051	19901										
MYLK	0	genome.wustl.edu	37	chr3	123337576	123337576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atagggttttacatgaggctTttcctcagcaacagcctcaa	8	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	123337576	123337576	T	C	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.5410	p.K1804E	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	102	0	0	106	22	17.19	-	-	-	C	123337576	T	C	123337576	3	2	240	1	0	0	0	0	1	0	0	0	10128	1850	64	5	342	5	MYLK	3	123337576	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	529536	123337576	74684854	1052	19902										
CCDC14	0	genome.wustl.edu	37	chr3	123674921	123674921	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatttctcaaaatgtccctCagcaaagaagcacaaccatc	4	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	123674921	123674921	C	G	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	silent	c.345	p.L115	1.000	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	174	0	0	120	27	18.37	-	-	-	G	123674921	C	G	123674921	2	3	240	1	0	0	0	0	0	0	0	1	2798	813	29	2		2	CCDC14	3	123674921	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	337345	123674921	74347509	1053	19903										
KALRN	0	genome.wustl.edu	37	chr3	124160830	124160830	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaatgctgaggtgtttctCaagtacatccacaggaacaa	10	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124160830	124160830	C	G	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	1	novel	nonsense	c.3137	p.S1046*	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	34	0	0	26	8	23.53	-	-	-	G	124160830	C	G	124160830	4	3	240	1	0	0	0	0	0	1	0	0	8029	813	29	2	3305	2	KALRN	3	124160830	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	485909	124160830	73861600	1054	19904										
KALRN	0	genome.wustl.edu	37	chr3	124281710	124281710	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctctggtggatgtgagctGacagtggtcctccaggactt	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124281710	124281710	G	A	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	silent	c.4950	p.L1650	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	39	0	0	63	13	17.11	-	-	-	A	124281710	G	A	124281710	2	1	240	1	0	0	0	0	0	0	0	1	8029	1277	45	2		2	KALRN	3	124281710	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	120880	124281710	73740720	1055	19905										
UMPS	0	genome.wustl.edu	37	chr3	124449331	124449331	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgcgacaatggcggtcgctCgtgcagctttggggccattg	16	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124449331	124449331	C	G	SNP	UMPS	ENST00000232607	human	ensembl	69_37n	1	known	missense	c.13	p.R5G	0.000	NULL	pfam_OMPdeCOase_dom,pfam_PRibTrfase,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_clade-1	-	no_errors	UMPS	HGNC	ENSG00000114491	67	0	0	37	17	31.48	-	-	-	G	124449331	C	G	124449331	3	3	240	1	0	0	0	0	1	0	0	0	17078	884	31	3	15	3	UMPS	3	124449331	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	167621	124449331	73573099	1056	19906										
HEG1	0	genome.wustl.edu	37	chr3	124692596	124692596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtagtacacatccgtcatCtggaggaggtttttggtact	12	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124692596	124692596	C	T	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	silent	c.3975	p.Q1325	1.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	100	0	0	100	18	15.25	-	-	-	T	124692596	C	T	124692596	2	4	240	1	0	0	0	0	0	0	0	1	7095	912	32	2		2	HEG1	3	124692596	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	243265	124692596	73329834	1057	19907										
HEG1	0	genome.wustl.edu	37	chr3	124748267	124748267	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaaagtcctcttgattctGatagaaggtgatgttttcta	9	5	3	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124748267	124748267	G	C	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.382	p.Q128E	0.011	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	96	0	0	85	55	39.29	-	-	-	C	124748267	G	C	124748267	3	2	240	1	0	0	0	0	1	0	0	0	7095	1299	45	2	3827	2	HEG1	3	124748267	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	55671	124748267	73274163	1058	19908										
ZNF148	0	genome.wustl.edu	37	chr3	124952625	124952625	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctccgttttctgccttttCttttttggcagtgagttgtc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	124952625	124952625	C	-	DEL	ZNF148	ENST00000360647	human	ensembl	69_37n	-1	known	frame_shift_del	c.945	p.R317fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848	172	0	0	115	29	18.83	-	-	-	-	124952625	C	-	124952625	7	5	240	1	0	1	0	1	0	0	0	0	17830	912	32	0	1443	0	ZNF148	3	124952625	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	204358	124952625	73069805	1059	19909										
ZNF148	0	genome.wustl.edu	37	chr3	125032181	125032181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtgcatactgtagtccttGaggaagtctttcatgtgttt	10	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	125032181	125032181	G	C	SNP	ZNF148	ENST00000360647	human	ensembl	69_37n	-1	known	missense	c.304	p.Q102E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848	210	0	0	191	46	19.41	-	-	-	C	125032181	G	C	125032181	3	2	240	1	0	0	0	0	1	0	0	0	17830	1299	45	2	2104	2	ZNF148	3	125032181	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	79556	125032181	72990249	1060	19910										
SNX4	0	genome.wustl.edu	37	chr3	125172694	125172694	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttagctgttgttctccttCatttatttgttcttctagca	5	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	125172694	125172694	C	T	SNP	SNX4	ENST00000251775	human	ensembl	69_37n	-1	known	missense	c.1150	p.E384K	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX4	HGNC	ENSG00000114520	184	1	0.54	183	47	20.43	-	-	-	T	125172694	C	T	125172694	3	4	240	1	0	0	0	0	1	0	0	0	14993	835	29	2	214	2	SNX4	3	125172694	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140513	125172694	72849736	1061	19911										
SLC41A3	0	genome.wustl.edu	37	chr3	125734398	125734398	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttagaaacggttttgctCaagatgagtcctccgaaact	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	125734398	125734398	C	G	SNP	SLC41A3	ENST00000315891	human	ensembl	69_37n	-1	known	missense	c.909	p.L303F	1.000	NULL	pfam_MgtE_Mg_transptr_membr,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	SLC41A3	HGNC	ENSG00000114544	100	0	0	136	22	13.92	-	-	-	G	125734398	C	G	125734398	3	3	240	1	0	0	0	0	1	0	0	0	14720	825	29	2	732	2	SLC41A3	3	125734398	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	561704	125734398	72288032	1062	19912										
ALDH1L1	0	genome.wustl.edu	37	chr3	125874322	125874322	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtctgggggctttgccctCagcgatcagcctcacggcct	13	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	125874322	125874322	C	A	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	nonsense	c.553	p.E185*	0.897	superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	43	0	0	58	7	10.77	-	-	-	A	125874322	C	A	125874322	4	1	240	1	0	0	0	0	0	1	0	0	494	835	29	2	2231	2	ALDH1L1	3	125874322	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	139924	125874322	72148108	1063	19913										
KLF15	0	genome.wustl.edu	37	chr3	126062715	126062715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgcgagcgcctgtgccgcGacagctcgtcagagcgcgag	16	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	126062715	126062715	G	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.1106	p.S369L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	18	0	0	19	6	24	-	-	-	A	126062715	G	A	126062715	3	1	240	1	0	0	0	0	1	0	0	0	8396	1059	37	1	148	1	KLF15	3	126062715	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	188393	126062715	71959715	1064	19914										
KLF15	0	genome.wustl.edu	37	chr3	126071245	126071245	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctcttgtgtggcccagctGagagctggctgcaggcatcc	15	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	126071245	126071245	G	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	39	0	0	47	8	14.55	-	-	-	A	126071245	G	A	126071245	3	1	240	1	0	0	0	0	1	0	0	0	8396	1294	45	2	737	2	KLF15	3	126071245	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8530	126071245	71951185	1065	19915										
PLXNA1	0	genome.wustl.edu	37	chr3	126739145	126739145	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatatgccatgcgggtgctCtttcctgggatcgaggacca	12	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	126739145	126739145	C	G	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	silent	c.3996	p.L1332	0.936	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	29	0	0	65	12	15.58	-	-	-	G	126739145	C	G	126739145	2	3	240	1	0	0	0	0	0	0	0	1	12193	900	32	2		2	PLXNA1	3	126739145	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	667900	126739145	71283285	1066	19916										
PODXL2	0	genome.wustl.edu	37	chr3	127358154	127358154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagggcctcacctccacctCcctgctagacctcctgctgc	8	19	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	127358154	127358154	C	T	SNP	PODXL2	ENST00000342480	human	ensembl	69_37n	1	known	missense	c.137	p.S46F	0.999	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631	63	0	0	92	14	13.21	-	-	-	T	127358154	C	T	127358154	3	4	240	1	0	0	0	0	1	0	0	0	12255	855	30	2	143	2	PODXL2	3	127358154	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	619009	127358154	70664276	1067	19917										
PODXL2	0	genome.wustl.edu	37	chr3	127379391	127379391	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaggaagaggaggagaggGagaaggaagaggtagagaaa	20	0	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	127379391	127379391	G	T	SNP	PODXL2	ENST00000342480	human	ensembl	69_37n	1	known	nonsense	c.520	p.E174*	0.821	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631	60	0	0	75	12	13.79	-	-	-	T	127379391	G	T	127379391	4	4	240	1	0	0	0	0	0	1	0	0	12255	1175	41	2	530	2	PODXL2	3	127379391	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21237	127379391	70643039	1068	19918										
KBTBD12	0	genome.wustl.edu	37	chr3	127642770	127642770	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caattcttcaggaatcagatCaagacataggagctatgggg	11	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	127642770	127642770	C	G	SNP	KBTBD12	ENST00000405109	human	ensembl	69_37n	1	known	nonsense	c.866	p.S289*	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	96	0	0	96	14	12.73	-	-	-	G	127642770	C	G	127642770	4	3	240	1	0	0	0	0	0	1	0	0	8045	838	29	2	868	2	KBTBD12	3	127642770	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	263379	127642770	70379660	1069	19919										
SEC61A1	0	genome.wustl.edu	37	chr3	127783794	127783794	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagacaaggtccgagcccttCgggaggcgttctaccgccag	13	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	127783794	127783794	C	T	SNP	SEC61A1	ENST00000243253	human	ensembl	69_37n	1	known	missense	c.691	p.R231W	0.075	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A1	HGNC	ENSG00000058262	120	0	0	117	23	16.43	-	-	-	T	127783794	C	T	127783794	3	4	240	1	0	0	0	0	1	0	0	0	14088	875	31	1	721	1	SEC61A1	3	127783794	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	141024	127783794	70238636	1070	19920										
KIAA1257	0	genome.wustl.edu	37	chr3	128712060	128712060	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttcctccacgtcacactCgctcgtggactggtaaaagc	10	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	128712060	128712060	C	G	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.88	p.E30Q	0.001	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	42	0	0	67	14	17.07	-	-	-	G	128712060	C	G	128712060	3	3	240	1	0	0	0	0	1	0	0	0	8270	893	31	3	1169	3	KIAA1257	3	128712060	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	928266	128712060	69310370	1071	19921										
COL6A5	0	genome.wustl.edu	37	chr3	130095532	130095532	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggggtgcagaaagcttctGaggaaaatctgaaggccatg	15	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	130095532	130095532	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	0.399	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	58	0	0	64	24	27.27	-	-	-	A	130095532	G	A	130095532	3	1	240	1	0	0	0	0	1	0	0	0	3732	1291	45	2	526	2	COL6A5	3	130095532	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1383472	130095532	67926898	1072	19922										
COL6A5	0	genome.wustl.edu	37	chr3	130110299	130110299	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacactgccaaggctctcaaGcacgcaaatgccctgtttac	7	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	130110299	130110299	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.2694	p.K898	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	47	0	0	41	27	39.71	-	-	-	A	130110299	G	A	130110299	2	1	240	1	0	0	0	0	0	0	0	1	3732	962	34	4		4	COL6A5	3	130110299	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14767	130110299	67912131	1073	19923										
COL6A5	0	genome.wustl.edu	37	chr3	130124489	130124489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggattgcaggatgtccagggGcgtggggtcagaaggtaagg	20	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	130124489	130124489	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.4339	p.A1447T	0.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	76	0	0	76	15	16.48	-	-	-	A	130124489	G	A	130124489	3	1	240	1	0	0	0	0	1	0	0	0	3732	1203	42	4	4389	4	COL6A5	3	130124489	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14190	130124489	67897941	1074	19924										
DNAJC13	0	genome.wustl.edu	37	chr3	132209881	132209881	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatactccagaagcaatctgGagcagtgaaatgaggtaaat	11	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	132209881	132209881	G	C	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.3609	p.W1203C	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	47	0	0	38	12	24	-	-	-	C	132209881	G	C	132209881	3	2	240	1	0	0	0	0	1	0	0	0	4667	1183	41	2	3731	2	DNAJC13	3	132209881	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2085392	132209881	65812549	1075	19925										
UBA5	0	genome.wustl.edu	37	chr3	132387769	132387769	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagcagcagaacatactctGaggtaaatggaatagcaatc	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	132387769	132387769	G	A	SNP	UBA5	ENST00000356232	human	ensembl	69_37n	1	known	silent	c.405	p.L135	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA5	HGNC	ENSG00000081307	88	0	0	75	33	30.56	-	-	-	A	132387769	G	A	132387769	2	1	240	1	0	0	0	0	0	0	0	1	16927	1277	45	2		2	UBA5	3	132387769	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	177888	132387769	65634661	1076	19926										
NPHP3	0	genome.wustl.edu	37	chr3	132432100	132432100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaaaatatcccattgtctCgcacattctcttaagtttag	5	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	132432100	132432100	C	T	SNP	NPHP3	ENST00000337331	human	ensembl	69_37n	-1	known	missense	c.988	p.E330K	1.000	NULL	pfam_TPR-1,pfam_TPR-3,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971	59	0	0	67	8	10.67	-	-	-	T	132432100	C	T	132432100	3	4	240	1	0	0	0	0	1	0	0	0	10652	893	31	1	3092	1	NPHP3	3	132432100	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44331	132432100	65590330	1077	19927										
NPHP3	0	genome.wustl.edu	37	chr3	132435634	132435634	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaaagggtccttccacatCtatagaactatgggcaaact	8	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	132435634	132435634	C	G	SNP	NPHP3	ENST00000337331	human	ensembl	69_37n	-1	known	missense	c.790	p.D264H	1.000	NULL	pfam_TPR-1,pfam_TPR-3,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971	67	0	0	61	9	12.86	-	-	-	G	132435634	C	G	132435634	3	3	240	1	0	0	0	0	1	0	0	0	10652	913	32	2	3298	2	NPHP3	3	132435634	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3534	132435634	65586796	1078	19928										
TOPBP1	0	genome.wustl.edu	37	chr3	133329973	133329973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatggaactacttccccattCatagtcttcttcctagagaa	5	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	133329973	133329973	C	G	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.4048	p.E1350Q	1.000	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	144	0	0	162	40	19.8	-	-	-	G	133329973	C	G	133329973	3	3	240	1	0	0	0	0	1	0	0	0	16465	835	29	2	536	2	TOPBP1	3	133329973	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	894339	133329973	64692457	1079	19929										
TOPBP1	0	genome.wustl.edu	37	chr3	133362081	133362081	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctaggaatgttaaagactCtttttctgctccagcacact	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	133362081	133362081	C	G	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662Q	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	56	0	0	72	12	14.29	-	-	-	G	133362081	C	G	133362081	3	3	240	1	0	0	0	0	1	0	0	0	16465	922	32	2	2652	2	TOPBP1	3	133362081	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32108	133362081	64660349	1080	19930										
TF	0	genome.wustl.edu	37	chr3	133472539	133472539	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtggcagagttctatgggtCaaaagagggtaagttctccc	14	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	133472539	133472539	C	G	SNP	TF	ENST00000402696	human	ensembl	69_37n	1	known	nonsense	c.317	p.S106*	0.007	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	TF	HGNC	ENSG00000091513	58	0	0	65	15	18.75	-	-	-	G	133472539	C	G	133472539	4	3	240	1	0	0	0	0	0	1	0	0	15880	838	29	2	327	2	TF	3	133472539	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	110458	133472539	64549891	1081	19931										
CEP63	0	genome.wustl.edu	37	chr3	134278053	134278053	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcactacaaaacagatcttCattctccaagaggacaagcg	7	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	134278053	134278053	C	A	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	missense	c.1735	p.H579N	0.072	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	59	0	0	83	11	11.7	-	-	-	A	134278053	C	A	134278053	3	1	240	1	0	0	0	0	1	0	0	0	3286	826	29	2	1785	2	CEP63	3	134278053	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	805514	134278053	63744377	1082	19932										
KY	0	genome.wustl.edu	37	chr3	134323027	134323027	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggcttcatgatgcccatCtgctccgagaaccagctggg	13	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	134323027	134323027	C	G	SNP	KY	ENST00000423778	human	ensembl	69_37n	-1	known	missense	c.1380	p.Q460H	1.000	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611	30	0	0	43	9	17.31	-	-	-	G	134323027	C	G	134323027	3	3	240	1	0	0	0	0	1	0	0	0	8640	912	32	2	609	2	KY	3	134323027	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44974	134323027	63699403	1083	19933										
MSL2	0	genome.wustl.edu	37	chr3	135870120	135870120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtactagcgttacgcacagCaatgctagtcacgttaatgc	10	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	135870120	135870120	C	T	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	missense	c.1603	p.A535T	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	84	0	0	68	23	25.27	-	-	-	T	135870120	C	T	135870120	3	4	240	1	0	0	0	0	1	0	0	0	9950	710	25	4	134	4	MSL2	3	135870120	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1547093	135870120	62152310	1084	19934										
STAG1	0	genome.wustl.edu	37	chr3	136062801	136062801	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcagggggccaggagtctGaatcatggtgtcagtcctgt	16	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	136062801	136062801	G	C	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.3319	p.Q1107E	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	90	0	0	101	20	16.53	-	-	-	C	136062801	G	C	136062801	3	2	240	1	0	0	0	0	1	0	0	0	15333	1299	45	2	477	2	STAG1	3	136062801	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192681	136062801	61959629	1085	19935										
STAG1	0	genome.wustl.edu	37	chr3	136082220	136082220	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttacctgttgcaaactGagaatgagagtcttggcaca	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	136082220	136082220	G	C	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	silent	c.2775	p.L925	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	245	0	0	251	34	11.93	-	-	-	C	136082220	G	C	136082220	2	2	240	1	0	0	0	0	0	0	0	1	15333	1277	45	2		2	STAG1	3	136082220	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19419	136082220	61940210	1086	19936										
MRAS	0	genome.wustl.edu	37	chr3	138117362	138117362	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtcgatttgatgcacttGaggaagatcaccagggagca	13	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	138117362	138117362	G	C	SNP	MRAS	ENST00000289104	human	ensembl	69_37n	1	known	missense	c.399	p.L133F	0.995	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	MRAS	HGNC	ENSG00000158186	63	0	0	81	11	11.96	-	-	-	C	138117362	G	C	138117362	3	2	240	1	0	0	0	0	1	0	0	0	9827	1281	45	2	409	2	MRAS	3	138117362	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2035142	138117362	59905068	1087	19937										
PIK3CB	0	genome.wustl.edu	37	chr3	138474622	138474622	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctataaggactccaatttttGagtctaatttttcccctggg	7	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	138474622	138474622	G	C	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	nonsense	c.371	p.S124*	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	73	0	0	61	19	23.75	-	-	-	C	138474622	G	C	138474622	4	2	240	1	0	0	0	0	0	1	0	0	11988	1294	45	2	2923	2	PIK3CB	3	138474622	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	357260	138474622	59547808	1088	19938										
COPB2	0	genome.wustl.edu	37	chr3	139092190	139092190	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttggcctgctggacttctGaatgcttggcccaaattatc	11	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	139092190	139092190	G	C	SNP	COPB2	ENST00000333188	human	ensembl	69_37n	-1	known	nonsense	c.959	p.S320*	1.000	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,superfamily_WD40_repeat_dom	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	177	0	0	180	25	12.14	-	-	-	C	139092190	G	C	139092190	4	2	240	1	0	0	0	0	0	1	0	0	3759	1294	45	2	1817	2	COPB2	3	139092190	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	617568	139092190	58930240	1089	19939										
RNF7	0	genome.wustl.edu	37	chr3	141464118	141464118	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtccaaagaatcggcaaatGagagtggttagaaggcttct	13	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	141464118	141464118	G	A	SNP	RNF7	ENST00000273480	human	ensembl	69_37n	1	known	silent	c.341	p.*114	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF7	HGNC	ENSG00000114125	47	0	0	25	19	43.18	-	-	-	A	141464118	G	A	141464118	2	1	240	1	0	0	0	0	0	0	0	1	13585	1285	45	2		2	RNF7	3	141464118	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2371928	141464118	56558312	1090	19940										
GK5	0	genome.wustl.edu	37	chr3	141917688	141917688	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccaatctcaaagaagtctGctgggttgtgaaagtgaaca	11	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	141917688	141917688	G	A	SNP	GK5	ENST00000392993	human	ensembl	69_37n	-1	known	nonsense	c.499	p.Q167*	1.000	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C	-	no_errors	GK5	HGNC	ENSG00000175066	177	0	0	152	32	17.3	-	-	-	A	141917688	G	A	141917688	4	1	240	1	0	0	0	0	0	1	0	0	6474	1328	46	4	1138	4	GK5	3	141917688	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	453570	141917688	56104742	1091	19941										
ATR	0	genome.wustl.edu	37	chr3	142274814	142274814	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagatgaacattcatgttgaGaagtggctttcaagttccta	9	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	142274814	142274814	G	C	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.2246	p.S749C	0.880	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	104	0	0	108	21	16.28	-	-	-	C	142274814	G	C	142274814	3	2	240	1	0	0	0	0	1	0	0	0	1208	942	33	2	5840	2	ATR	3	142274814	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	357126	142274814	55747616	1092	19942										
TRPC1	0	genome.wustl.edu	37	chr3	142443451	142443451	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctcgggcgcctcctcctCctccctgccttcctctccat	5	23	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	142443451	142443451	C	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.50	p.S17Y	1.000	NULL	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	45	0	0	25	7	21.88	-	-	-	A	142443451	C	A	142443451	3	1	240	1	0	0	0	0	1	0	0	0	16674	855	30	2	52	2	TRPC1	3	142443451	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	168637	142443451	55578979	1093	19943										
TRPC1	0	genome.wustl.edu	37	chr3	142522868	142522868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtatattttctccttagcgCatgtggcaatctttgtcaca	8	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	142522868	142522868	C	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.1807	p.H603N	1.000	pfam_Ion_trans_dom,prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	130	0	0	121	82	40.39	-	-	-	A	142522868	C	A	142522868	3	1	240	1	0	0	0	0	1	0	0	0	16674	710	25	4	1743	4	TRPC1	3	142522868	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	79417	142522868	55499562	1094	19944										
PCOLCE2	0	genome.wustl.edu	37	chr3	142537228	142537228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttctgattcttggtcttGaacatcatgataaagctgtt	8	7	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	142537228	142537228	G	C	SNP	PCOLCE2	ENST00000295992	human	ensembl	69_37n	-1	known	missense	c.1197	p.F399L	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_CUB,pfam_Netrin_module_non-TIMP,superfamily_CUB,superfamily_TIMP-like_OB-fold,smart_CUB,smart_Netrin_module_non-TIMP,pfscan_CUB,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710	125	1	0.78	92	54	36.73	-	-	-	C	142537228	G	C	142537228	3	2	240	1	0	0	0	0	1	0	0	0	11668	1281	45	2	54	2	PCOLCE2	3	142537228	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14360	142537228	55485202	1095	19945										
AGTR1	0	genome.wustl.edu	37	chr3	148459572	148459572	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaattgtgcttttctttttCttttcctggattccccacca	5	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	148459572	148459572	C	G	SNP	AGTR1	ENST00000349243	human	ensembl	69_37n	1	known	missense	c.750	p.F250L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT1_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Frt_met_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor	-	no_errors	AGTR1	HGNC	ENSG00000144891	45	0	0	51	11	17.74	-	-	-	G	148459572	C	G	148459572	3	3	240	1	0	0	0	0	1	0	0	0	401	912	32	2	752	2	AGTR1	3	148459572	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5922344	148459572	49562858	1096	19946										
CPB1	0	genome.wustl.edu	37	chr3	148558554	148558554	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaggacacagttatgagaaGtacaacaagtgggaaacggt	12	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	148558554	148558554	G	C	SNP	CPB1	ENST00000282957	human	ensembl	69_37n	1	known	missense	c.354	p.K118N	1.000	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002	109	0	0	120	17	12.32	-	-	-	C	148558554	G	C	148558554	3	2	240	1	0	0	0	0	1	0	0	0	3826	1020	36	4	368	4	CPB1	3	148558554	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98982	148558554	49463876	1097	19947										
CPB1	0	genome.wustl.edu	37	chr3	148577733	148577733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatccgggctacctgcgagGagaccttcctggcaatcaag	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	148577733	148577733	G	A	SNP	CPB1	ENST00000282957	human	ensembl	69_37n	1	known	missense	c.1198	p.E400K	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002	49	0	0	44	12	21.43	-	-	-	A	148577733	G	A	148577733	3	1	240	1	0	0	0	0	1	0	0	0	3826	1175	41	2	1240	2	CPB1	3	148577733	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19179	148577733	49444697	1098	19948										
HLTF	0	genome.wustl.edu	37	chr3	148782631	148782631	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttcctccaagtttcataGagtcatcgttaacattatat	5	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	148782631	148782631	G	C	SNP	HLTF	ENST00000310053	human	ensembl	69_37n	-1	known	missense	c.1013	p.S338C	0.076	smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794	248	0	0	274	45	14.11	-	-	-	C	148782631	G	C	148782631	3	2	240	1	0	0	0	0	1	0	0	0	7266	942	33	2	2084	2	HLTF	3	148782631	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204898	148782631	49239799	1099	19949										
RNF13	0	genome.wustl.edu	37	chr3	149563845	149563845	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catagggatgctcatgctgtCagccacacaagtctacacca	8	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	149563845	149563845	C	T	SNP	RNF13	ENST00000344229	human	ensembl	69_37n	1	known	missense	c.32	p.S11L	0.999	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF13	HGNC	ENSG00000082996	105	0	0	92	42	31.34	-	-	-	T	149563845	C	T	149563845	3	4	240	1	0	0	0	0	1	0	0	0	13523	838	29	2	34	2	RNF13	3	149563845	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	781214	149563845	48458585	1100	19950										
CLRN1	0	genome.wustl.edu	37	chr3	150690291	150690291	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccacactgcctcacaccctCtccgtggaaaagcccgtact	6	19	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	150690291	150690291	C	G	SNP	CLRN1	ENST00000328863	human	ensembl	69_37n	-1	known	missense	c.205	p.E69Q	0.959	NULL	NULL	-	no_errors	CLRN1	HGNC	ENSG00000163646	43	0	0	44	13	22.81	-	-	-	G	150690291	C	G	150690291	3	3	240	1	0	0	0	0	1	0	0	0	3587	922	32	2	559	2	CLRN1	3	150690291	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1126446	150690291	47332139	1101	19951										
MED12L	0	genome.wustl.edu	37	chr3	151073779	151073779	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcagctcatctttgatctCatggagccagcactgaacat	7	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	151073779	151073779	C	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.2508	p.L836	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	140	0	0	156	28	15.22	-	-	-	A	151073779	C	A	151073779	2	1	240	1	0	0	0	0	0	0	0	1	9500	813	29	2		2	MED12L	3	151073779	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	383488	151073779	46948651	1102	19952										
MED12L	0	genome.wustl.edu	37	chr3	151134121	151134121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagcagccccagcagcccCagccccagcagcctccccag	9	22	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	151134121	151134121	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	nonsense	c.6214	p.Q2072*	0.795	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	42	0	0	41	5	10.87	-	-	-	T	151134121	C	T	151134121	4	4	240	1	0	0	0	0	0	1	0	0	9500	595	21	4	6376	4	MED12L	3	151134121	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60342	151134121	46888309	1103	19953										
IGSF10	0	genome.wustl.edu	37	chr3	151163432	151163432	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttgtggtactctggtgtGatttgctggacaaagttgtt	13	4	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	151163432	151163432	G	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	nonsense	c.4337	p.S1446*	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	76	0	0	82	34	29.31	-	-	-	C	151163432	G	C	151163432	4	2	240	1	0	0	0	0	0	1	0	0	7651	1294	45	2	3594	2	IGSF10	3	151163432	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29311	151163432	46858998	1104	19954										
DHX36	0	genome.wustl.edu	37	chr3	153994016	153994016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcctgggagttgccttttCctgtgttttgatcaagtcta	10	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	153994016	153994016	C	T	SNP	DHX36	ENST00000496811	human	ensembl	69_37n	-1	known	missense	c.2971	p.E991K	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953	135	0	0	125	30	19.35	-	-	-	T	153994016	C	T	153994016	3	4	240	1	0	0	0	0	1	0	0	0	4545	864	30	2	59	2	DHX36	3	153994016	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2830584	153994016	44028414	1105	19955										
DHX36	0	genome.wustl.edu	37	chr3	154033877	154033877	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgcttctgactctttatCattcttcgcttgaacagaat	6	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	154033877	154033877	C	T	SNP	DHX36	ENST00000496811	human	ensembl	69_37n	-1	known	missense	c.319	p.D107N	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953	166	0	0	165	41	19.9	-	-	-	T	154033877	C	T	154033877	3	4	240	1	0	0	0	0	1	0	0	0	4545	826	29	2	2803	2	DHX36	3	154033877	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39861	154033877	43988553	1106	19956										
MME	0	genome.wustl.edu	37	chr3	154862220	154862220	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctcacttggatggatgccGagacaaaaaagagagctgaa	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	154862220	154862220	G	C	SNP	MME	ENST00000360490	human	ensembl	69_37n	1	known	missense	c.1390	p.E464Q	0.997	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549	154	0	0	123	17	12.14	-	-	-	C	154862220	G	C	154862220	3	2	240	1	0	0	0	0	1	0	0	0	9716	1059	37	3	1440	3	MME	3	154862220	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	828343	154862220	43160210	1107	19957										
C3orf33	0	genome.wustl.edu	37	chr3	155493550	155493550	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaatttctaaaccattctCagttattcggcgtaatcgtc	5	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	155493550	155493550	C	G	SNP	C3orf33	ENST00000340171	human	ensembl	69_37n	-1	known	missense	c.262	p.E88Q	0.805	superfamily_Staphylococal_nuclease_OB-fold	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928	103	0	0	85	12	12.37	-	-	-	G	155493550	C	G	155493550	3	3	240	1	0	0	0	0	1	0	0	0	2243	835	29	2	634	2	C3orf33	3	155493550	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	631330	155493550	42528880	1108	19958										
SLC33A1	0	genome.wustl.edu	37	chr3	155571376	155571376	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccaagatttgcgacgaccGaagttcttaacgtagaccgc	10	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	155571376	155571376	G	A	SNP	SLC33A1	ENST00000359479	human	ensembl	69_37n	-1	known	silent	c.411	p.F137	0.878	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease	-	no_errors	SLC33A1	HGNC	ENSG00000169359	31	0	0	70	15	17.65	-	-	-	A	155571376	G	A	155571376	2	1	240	1	0	0	0	0	0	0	0	1	14655	1049	37	1		1	SLC33A1	3	155571376	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77826	155571376	42451054	1109	19959										
GMPS	0	genome.wustl.edu	37	chr3	155621747	155621747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gataatacatgttcattattCaggtattacatttttagatg	6	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	155621747	155621747	C	G	SNP	GMPS	ENST00000496455	human	ensembl	69_37n	1	known	missense	c.420	p.F140L	1.000	pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_GMP_synth_N	pfam_GATASE_1,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	117	0	0	198	32	13.91	-	-	-	G	155621747	C	G	155621747	3	3	240	1	0	0	0	0	1	0	0	0	6550	825	29	2	434	2	GMPS	3	155621747	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	50371	155621747	42400683	1110	19960										
VEPH1	0	genome.wustl.edu	37	chr3	157213079	157213079	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagagtcatctaaggagaaGaggtccccagctcgtgaaag	12	9	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	157213079	157213079	G	T	SNP	VEPH1	ENST00000362010	human	ensembl	69_37n	-1	known	silent	c.60	p.L20	1.000	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415	121	0	0	110	29	20.86	-	-	-	T	157213079	G	T	157213079	2	4	240	1	0	0	0	0	0	0	0	1	17251	929	33	2		2	VEPH1	3	157213079	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1591332	157213079	40809351	1111	19961										
MLF1	0	genome.wustl.edu	37	chr3	158320635	158320635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggagtggcaaagtgaggTtttgaagtacaaaccaggac	14	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	158320635	158320635	T	C	SNP	MLF1	ENST00000392822	human	ensembl	69_37n	1	known	missense	c.701	p.V234A	0.828	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053	109	1	0.91	103	14	11.97	-	-	-	C	158320635	T	C	158320635	3	2	240	1	0	0	0	0	1	0	0	0	9685	1725	60	5	630	5	MLF1	3	158320635	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1107556	158320635	39701795	1112	19962										
GFM1	0	genome.wustl.edu	37	chr3	158399941	158399941	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtttgtgcctgctgtaGaaaaggtaaatttttaaaaa	9	4	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	158399941	158399941	G	C	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	1	known	missense	c.1759	p.E587Q	1.000	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	60	0	0	58	12	17.14	-	-	-	C	158399941	G	C	158399941	3	2	240	1	0	0	0	0	1	0	0	0	6393	943	33	2	1813	2	GFM1	3	158399941	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	79306	158399941	39622489	1113	19963										
SMC4	0	genome.wustl.edu	37	chr3	160132288	160132288	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaactggagaaacaacttCaaaaagataaagaaaaggta	7	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	160132288	160132288	C	T	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	nonsense	c.1255	p.Q419*	0.994	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	45	0	0	32	11	25.58	-	-	-	T	160132288	C	T	160132288	4	4	240	1	0	0	0	0	0	1	0	0	14874	827	29	2	1285	2	SMC4	3	160132288	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1732347	160132288	37890142	1114	19964										
SI	0	genome.wustl.edu	37	chr3	164750357	164750357	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaatgagcgttcattggttGattattttccgccactctaa	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	164750357	164750357	G	C	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.2689	p.Q897E	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	172	0	0	146	33	18.44	-	-	-	C	164750357	G	C	164750357	3	2	240	1	0	0	0	0	1	0	0	0	14386	1299	45	2	2894	2	SI	3	164750357	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4618069	164750357	33272073	1115	19965										
SLITRK3	0	genome.wustl.edu	37	chr3	164907887	164907887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaatgcgttccagccaactCttcagttgtacaatttcaca	7	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	164907887	164907887	C	G	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.732	p.K244N	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	68	0	0	56	17	23.29	-	-	-	G	164907887	C	G	164907887	3	3	240	1	0	0	0	0	1	0	0	0	14833	912	32	2	2205	2	SLITRK3	3	164907887	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157530	164907887	33114543	1116	19966										
BCHE	0	genome.wustl.edu	37	chr3	165548023	165548023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcaacgttctgttcctagCttcataaagagatgttaccg	8	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	165548023	165548023	C	T	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	missense	c.799	p.A267T	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	69	0	0	83	13	13.54	-	-	-	T	165548023	C	T	165548023	3	4	240	1	0	0	0	0	1	0	0	0	1362	797	28	4	1021	4	BCHE	3	165548023	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	640136	165548023	32474407	1117	19967										
ZBBX	0	genome.wustl.edu	37	chr3	166960399	166960399	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgaaatctgggaactcttCtgaggttaagctgtaaagct	11	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	166960399	166960399	C	T	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.2287	p.E763K	1.000	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	99	0	0	105	16	13.22	-	-	-	T	166960399	C	T	166960399	3	4	240	1	0	0	0	0	1	0	0	0	17613	922	32	2	240	2	ZBBX	3	166960399	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1412376	166960399	31062031	1118	19968										
PDCD10	0	genome.wustl.edu	37	chr3	167437922	167437922	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggtctcagcttcattcttCatctcttccattgtcatcct	5	13	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	167437922	167437922	C	T	SNP	PDCD10	ENST00000392750	human	ensembl	69_37n	-1	known	missense	c.24	p.M8I	1.000	NULL	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209	184	0	0	171	32	15.76	-	-	-	T	167437922	C	T	167437922	3	4	240	1	0	0	0	0	1	0	0	0	11689	826	29	2	642	2	PDCD10	3	167437922	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	477523	167437922	30584508	1119	19969										
MYNN	0	genome.wustl.edu	37	chr3	169501318	169501318	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagttttatttcctcaggaGagctcaacaaacactttcgg	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	169501318	169501318	G	C	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	missense	c.1453	p.E485Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	113	0	0	112	26	18.84	-	-	-	C	169501318	G	C	169501318	3	2	240	1	0	0	0	0	1	0	0	0	10133	943	33	2	1471	2	MYNN	3	169501318	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2063396	169501318	28521112	1120	19970										
CLDN11	0	genome.wustl.edu	37	chr3	170150448	170150448	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgggtggctgtgtcatcctCtgctgcgctggagatgccca	15	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	170150448	170150448	C	G	SNP	CLDN11	ENST00000064724	human	ensembl	69_37n	1	known	silent	c.528	p.L176	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin11,prints_Claudin	-	no_errors	CLDN11	HGNC	ENSG00000013297	94	0	0	113	23	16.91	-	-	-	G	170150448	C	G	170150448	2	3	240	1	0	0	0	0	0	0	0	1	3503	900	32	2		2	CLDN11	3	170150448	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	649130	170150448	27871982	1121	19971										
FNDC3B	0	genome.wustl.edu	37	chr3	172046820	172046820	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacaaagctttgtccggcaAtggggtacacattcaggctg	12	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	172046820	172046820	A	T	SNP	FNDC3B	ENST00000336824	human	ensembl	69_37n	1	known	missense	c.1333	p.M445L	0.186	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420	57	0	0	91	21	18.75	-	-	-	T	172046820	A	T	172046820	3	4	240	1	0	0	0	0	1	0	0	0	6016	101	4	5	1375	5	FNDC3B	3	172046820	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	1896372	172046820	25975610	1122	19972										
GHSR	0	genome.wustl.edu	37	chr3	172163232	172163232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggaaggggagccagcagaGgatgaaggcaaacaccacta	15	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	172163232	172163232	G	T	SNP	GHSR	ENST00000241256	human	ensembl	69_37n	-1	known	missense	c.820	p.L274I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_GHS1_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853	42	0	0	52	16	23.53	-	-	-	T	172163232	G	T	172163232	3	4	240	1	0	0	0	0	1	0	0	0	6427	1000	35	4	284	4	GHSR	3	172163232	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	116412	172163232	25859198	1123	19973										
ECT2	0	genome.wustl.edu	37	chr3	172482234	172482234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagctgagcattccctttCcatagggtcactcctagata	7	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	172482234	172482234	C	T	SNP	ECT2	ENST00000427830	human	ensembl	69_37n	1	known	missense	c.1142	p.S381F	1.000	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	120	0	0	151	29	16.11	-	-	-	T	172482234	C	T	172482234	3	4	240	1	0	0	0	0	1	0	0	0	4936	855	30	2	1180	2	ECT2	3	172482234	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	319002	172482234	25540196	1124	19974										
NLGN1	0	genome.wustl.edu	37	chr3	173997124	173997124	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatgtatactgactgggctGaccgtcataaccctgaaacc	8	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	173997124	173997124	G	A	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	missense	c.1453	p.D485N	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	63	0	0	83	12	12.5	-	-	-	A	173997124	G	A	173997124	3	1	240	1	0	0	0	0	1	0	0	0	10533	1290	45	2	1347	2	NLGN1	3	173997124	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1514890	173997124	24025306	1125	19975										
NLGN1	0	genome.wustl.edu	37	chr3	173998872	173998872	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagtccattcatccacatGaggtggttcttcggaccgcc	11	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	173998872	173998872	G	C	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	missense	c.2371	p.E791Q	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	70	0	0	83	14	14.43	-	-	-	C	173998872	G	C	173998872	3	2	240	1	0	0	0	0	1	0	0	0	10533	1291	45	2	2269	2	NLGN1	3	173998872	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1748	173998872	24023558	1126	19976										
PIK3CA	0	genome.wustl.edu	37	chr3	178928090	178928090	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggattagaagatttgctGaaccctattggtgttactgg	11	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	178928090	178928090	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.1368	p.L456	0.998	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	152	0	0	164	28	14.58	-	-	-	A	178928090	G	A	178928090	2	1	240	1	0	0	0	0	0	0	0	1	11987	1277	45	2		2	PIK3CA	3	178928090	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4929218	178928090	19094340	1127	19977										
PIK3CA	0	genome.wustl.edu	37	chr3	178937419	178937419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaggctatggaacttctgGactgtaattacccagatcct	8	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	178937419	178937419	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1807	p.D603H	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	71	0	0	91	16	14.95	-	-	-	C	178937419	G	C	178937419	3	2	240	1	0	0	0	0	1	0	0	0	11987	1174	41	2	1849	2	PIK3CA	3	178937419	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9329	178937419	19085011	1128	19978										
PIK3CA	0	genome.wustl.edu	37	chr3	178951910	178951910	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatgtgttacaaggcttatCtagctattcgacagcatgcc	9	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	178951910	178951910	C	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2965	p.L989V	0.999	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	99	0	0	91	15	14.15	-	-	-	G	178951910	C	G	178951910	3	3	240	1	0	0	0	0	1	0	0	0	11987	912	32	2	3043	2	PIK3CA	3	178951910	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14491	178951910	19070520	1129	19979										
PEX5L	0	genome.wustl.edu	37	chr3	179537670	179537670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcactagccgagatggttActtggttctgggcttcttgg	12	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	179537670	179537670	A	C	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.917	p.V306G	0.976	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	239	1	0.41	229	48	17.33	-	-	-	C	179537670	A	C	179537670	3	2	240	1	0	0	0	0	1	0	0	0	11823	391	14	5	991	5	PEX5L	3	179537670	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	585760	179537670	18484760	1130	19980										
CCDC39	0	genome.wustl.edu	37	chr3	180334334	180334334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgtttgaaggataatacgGatctcagtattttcttctat	7	5	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	180334334	180334334	G	T	SNP	CCDC39	ENST00000473854	human	ensembl	69_37n	-1	putative	missense	c.107	p.S36Y	0.008	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC39	HGNC	ENSG00000145075	88	0	0	100	21	17.36	-	-	-	T	180334334	G	T	180334334	3	4	240	1	0	0	0	0	1	0	0	0	2837	1164	41	2	281	2	CCDC39	3	180334334	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	796664	180334334	17688096	1131	19981										
CCDC39	0	genome.wustl.edu	37	chr3	180334472	180334472	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagacggatttcctttgtGagttttgcacactgttggta	10	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	180334472	180334472	G	A	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	silent	c.2418	p.L806	0.993	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	129	0	0	156	36	18.75	-	-	-	A	180334472	G	A	180334472	2	1	240	1	0	0	0	0	0	0	0	1	2837	1277	45	2		2	CCDC39	3	180334472	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	138	180334472	17687958	1132	19982										
FXR1	0	genome.wustl.edu	37	chr3	180693125	180693125	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgcagattatatttctaGagctgagtctcagagcagac	10	7	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	180693125	180693125	G	A	SNP	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	missense	c.1628	p.R543K	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	88	0	0	61	26	29.89	-	-	-	A	180693125	G	A	180693125	3	1	240	1	0	0	0	0	1	0	0	0	6164	942	33	2	1690	2	FXR1	3	180693125	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	358653	180693125	17329305	1133	19983										
DCUN1D1	0	genome.wustl.edu	37	chr3	182665365	182665365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttattccataagtctaaGaatttaaatcttccattaag	3	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	182665365	182665365	G	C	SNP	DCUN1D1	ENST00000292782	human	ensembl	69_37n	-1	known	missense	c.576	p.F192L	1.000	pfam_PONY_dom	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D1	HGNC	ENSG00000043093	74	0	0	50	8	13.79	-	-	-	C	182665365	G	C	182665365	3	2	240	1	0	0	0	0	1	0	0	0	4344	933	33	2	215	2	DCUN1D1	3	182665365	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1972240	182665365	15357065	1134	19984										
LAMP3	0	genome.wustl.edu	37	chr3	182871508	182871508	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatcagctgtatccccatctCtgcttttatacagagtctgc	6	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	182871508	182871508	C	G	SNP	LAMP3	ENST00000265598	human	ensembl	69_37n	-1	known	missense	c.721	p.E241Q	1.000	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	87	0	0	120	21	14.89	-	-	-	G	182871508	C	G	182871508	3	3	240	1	0	0	0	0	1	0	0	0	8673	922	32	2	549	2	LAMP3	3	182871508	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	206143	182871508	15150922	1135	19985										
B3GNT5	0	genome.wustl.edu	37	chr3	182987776	182987776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtgaatgataccctgtctCttaagcacacctcagcgggg	10	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	182987776	182987776	C	G	SNP	B3GNT5	ENST00000326505	human	ensembl	69_37n	1	known	missense	c.190	p.L64V	0.700	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597	86	0	0	103	19	15.57	-	-	-	G	182987776	C	G	182987776	3	3	240	1	0	0	0	0	1	0	0	0	1264	913	32	2	192	2	B3GNT5	3	182987776	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	116268	182987776	15034654	1136	19986										
KLHL6	0	genome.wustl.edu	37	chr3	183217570	183217570	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaatgatcatgaacacctCagactggaactcatgcatcc	7	13	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	183217570	183217570	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	missense	c.955	p.E319K	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	45	0	0	62	19	23.46	-	-	-	T	183217570	C	T	183217570	3	4	240	1	0	0	0	0	1	0	0	0	8446	835	29	2	926	2	KLHL6	3	183217570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	229794	183217570	14804860	1137	19987										
KLHL24	0	genome.wustl.edu	37	chr3	183381421	183381421	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgctctaaggaatgacattCttgtttcaggtaaatataga	9	5	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	183381421	183381421	C	G	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.1096	p.L366V	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	69	0	0	93	23	19.83	-	-	-	G	183381421	C	G	183381421	3	3	240	1	0	0	0	0	1	0	0	0	8432	913	32	2	1102	2	KLHL24	3	183381421	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	163851	183381421	14641009	1138	19988										
HTR3C	0	genome.wustl.edu	37	chr3	183772651	183772651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccgtgtcaacatctccttCaccctgtctgccatcctggg	7	17	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	183772651	183772651	C	T	SNP	HTR3C	ENST00000318351	human	ensembl	69_37n	1	known	silent	c.210	p.F70	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3C	HGNC	ENSG00000178084	45	0	0	65	13	16.67	-	-	-	T	183772651	C	T	183772651	2	4	240	1	0	0	0	0	0	0	0	1	7500	825	29	2		2	HTR3C	3	183772651	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	391230	183772651	14249779	1139	19989										
HTR3E	0	genome.wustl.edu	37	chr3	183818345	183818345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatcccactgctctgaattCagtgtttaatagaaagccct	8	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	183818345	183818345	C	T	SNP	HTR3E	ENST00000335304	human	ensembl	69_37n	1	known	missense	c.185	p.S62L	0.020	superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038	75	0	0	80	20	20	-	-	-	T	183818345	C	T	183818345	3	4	240	1	0	0	0	0	1	0	0	0	7502	838	29	2	187	2	HTR3E	3	183818345	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45694	183818345	14204085	1140	19990										
ECE2	0	genome.wustl.edu	37	chr3	183967551	183967551	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgcgggtaccgcgaagtCgagtactgggatcagcgcta	14	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	183967551	183967551	C	G	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	silent	c.69	p.V23	0.981	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	12	0	0	15	4	21.05	-	-	-	G	183967551	C	G	183967551	2	3	240	1	0	0	0	0	0	0	0	1	4925	871	31	3		3	ECE2	3	183967551	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	149206	183967551	14054879	1141	19991										
CLCN2	0	genome.wustl.edu	37	chr3	184069895	184069895	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catctagttgctgctcctccCactccagaatctgaggggaa	9	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	184069895	184069895	C	T	SNP	CLCN2	ENST00000265593	human	ensembl	69_37n	-1	known	nonsense	c.2321	p.W774*	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	84	0	0	108	29	21.17	-	-	-	T	184069895	C	T	184069895	4	4	240	1	0	0	0	0	0	1	0	0	3493	595	21	4	387	4	CLCN2	3	184069895	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102344	184069895	13952535	1142	19992										
EPHB3	0	genome.wustl.edu	37	chr3	184295792	184295792	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatcgctatcgtctgcctCaggtactcccaggcccactg	9	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	184295792	184295792	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	silent	c.1746	p.L582	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	80	0	0	71	14	16.47	-	-	-	T	184295792	C	T	184295792	2	4	240	1	0	0	0	0	0	0	0	1	5213	813	29	2		2	EPHB3	3	184295792	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	225897	184295792	13726638	1143	19993										
MAGEF1	0	genome.wustl.edu	37	chr3	184429378	184429378	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccaactccgccaccgtccGattcagccggcggtaggccc	10	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	184429378	184429378	G	C	SNP	MAGEF1	ENST00000317897	human	ensembl	69_37n	-1	known	missense	c.232	p.R78G	0.042	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEF1	HGNC	ENSG00000177383	28	0	0	25	7	21.21	-	-	-	C	184429378	G	C	184429378	3	2	240	1	0	0	0	0	1	0	0	0	9258	1057	37	3	695	3	MAGEF1	3	184429378	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	133586	184429378	13593052	1144	19994										
EHHADH	0	genome.wustl.edu	37	chr3	184910076	184910076	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcaggggagggtttccctGagaagccagtttttttagat	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	184910076	184910076	G	C	SNP	EHHADH	ENST00000231887	human	ensembl	69_37n	-1	known	missense	c.2110	p.Q704E	0.102	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790	60	0	0	45	14	23.33	-	-	-	C	184910076	G	C	184910076	3	2	240	1	0	0	0	0	1	0	0	0	5017	1299	45	2	65	2	EHHADH	3	184910076	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	480698	184910076	13112354	1145	19995										
MAP3K13	0	genome.wustl.edu	37	chr3	185155363	185155363	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaagtgagagaacagaatGagacggatatcaagcatttg	12	4	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	185155363	185155363	G	A	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	missense	c.604	p.E202K	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	56	0	0	67	12	15.19	-	-	-	A	185155363	G	A	185155363	3	1	240	1	0	0	0	0	1	0	0	0	9318	1291	45	2	610	2	MAP3K13	3	185155363	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	245287	185155363	12867067	1146	19996										
SENP2	0	genome.wustl.edu	37	chr3	185304285	185304285	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgcccgggccctcctgaaGaggcggcgctcagacaggtg	15	15	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	185304285	185304285	G	A	SNP	SENP2	ENST00000296257	human	ensembl	69_37n	1	known	silent	c.84	p.K28	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP2	HGNC	ENSG00000163904	53	0	0	40	8	16.67	-	-	-	A	185304285	G	A	185304285	2	1	240	1	0	0	0	0	0	0	0	1	14135	933	33	2		2	SENP2	3	185304285	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	148922	185304285	12718145	1147	19997										
IGF2BP2	0	genome.wustl.edu	37	chr3	185363397	185363397	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgtacaatttccctgatCttgcgctgtgcagtctgcag	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	185363397	185363397	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	silent	c.1722	p.K574	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	83	0	0	81	26	24.3	-	-	-	T	185363397	C	T	185363397	2	4	240	1	0	0	0	0	0	0	0	1	7628	912	32	2		2	IGF2BP2	3	185363397	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59112	185363397	12659033	1148	19998										
DGKG	0	genome.wustl.edu	37	chr3	185906092	185906092	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccccagagattggtgcctCcgtacatgctgggaatgttg	12	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	185906092	185906092	C	A	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.1994	p.G665V	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	101	0	0	99	64	39.02	-	-	-	A	185906092	C	A	185906092	3	1	240	1	0	0	0	0	1	0	0	0	4505	855	30	2	397	2	DGKG	3	185906092	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	542695	185906092	12116338	1149	19999										
HRG	0	genome.wustl.edu	37	chr3	186394974	186394974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatccccacaagccacacGaacatggacccccacctcct	4	20	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186394974	186394974	G	A	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	missense	c.880	p.E294K	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	147	0	0	150	30	16.67	-	-	-	A	186394974	G	A	186394974	3	1	240	1	0	0	0	0	1	0	0	0	7405	1059	37	1	906	1	HRG	3	186394974	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	488882	186394974	11627456	1150	20000										
EIF4A2	0	genome.wustl.edu	37	chr3	186506941	186506941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagggggtcgatttgggagGaaaggtgtggctataaactt	17	3	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186506941	186506941	G	T	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.1110	p.R370S	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	111	0	0	79	19	19.39	-	-	-	T	186506941	G	T	186506941	3	4	240	1	0	0	0	0	1	0	0	0	5062	1165	41	2	1149	2	EIF4A2	3	186506941	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	111967	186506941	11515489	1151	20001										
RFC4	0	genome.wustl.edu	37	chr3	186507946	186507946	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttacggcaagtttttctgtGataatagacttctgtttatc	7	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186507946	186507946	G	A	SNP	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	silent	c.981	p.I327	0.965	pfam_Rep_factorC_C_dom,superfamily_DNA_pol3_clamp-load_cplx_C	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	153	0	0	130	26	16.67	-	-	-	A	186507946	G	A	186507946	2	1	240	1	0	0	0	0	0	0	0	1	13330	1280	45	2		2	RFC4	3	186507946	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1005	186507946	11514484	1152	20002										
ST6GAL1	0	genome.wustl.edu	37	chr3	186793493	186793493	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaccacccgctgctctatGagaagaatttggtgaagcat	9	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186793493	186793493	G	A	SNP	ST6GAL1	ENST00000169298	human	ensembl	69_37n	1	known	missense	c.1123	p.E375K	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GAL1	HGNC	ENSG00000073849	36	0	0	69	17	19.77	-	-	-	A	186793493	G	A	186793493	3	1	240	1	0	0	0	0	1	0	0	0	15312	1291	45	2	1141	2	ST6GAL1	3	186793493	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	285547	186793493	11228937	1153	20003										
RPL39L	0	genome.wustl.edu	37	chr3	186838938	186838938	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatgtgcaattccttataGacccagcttggttcttctcc	6	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186838938	186838938	G	C	SNP	RPL39L	ENST00000296277	human	ensembl	69_37n	-1	known	missense	c.151	p.L51V	1.000	superfamily_Ribosomal_L39e_dom	pfam_Ribosomal_L39,superfamily_Ribosomal_L39e_dom	-	no_errors	RPL39L	HGNC	ENSG00000163923	49	0	0	37	11	22.92	-	-	-	C	186838938	G	C	186838938	3	2	240	1	0	0	0	0	1	0	0	0	13679	933	33	2	8	2	RPL39L	3	186838938	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45445	186838938	11183492	1154	20004										
MASP1	0	genome.wustl.edu	37	chr3	186954135	186954135	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctccttggagactggtatCaccgtggtgtctctacgctg	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	186954135	186954135	C	A	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	silent	c.1524	p.V508	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	47	0	0	70	19	21.11	-	-	-	A	186954135	C	A	186954135	2	1	240	1	0	0	0	0	0	0	0	1	9393	813	29	2		2	MASP1	3	186954135	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	115197	186954135	11068295	1155	20005										
LEPREL1	0	genome.wustl.edu	37	chr3	189706747	189706747	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcagaggaagaaaattctCgatgggagagaggcggccag	17	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	189706747	189706747	C	G	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	missense	c.904	p.E302Q	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	76	0	0	69	20	22.47	-	-	-	G	189706747	C	G	189706747	3	3	240	1	0	0	0	0	1	0	0	0	8784	893	31	3	1270	3	LEPREL1	3	189706747	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2752612	189706747	8315683	1156	20006										
CPN2	0	genome.wustl.edu	37	chr3	194063112	194063112	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgaggttcaagaagctaCtgcctgtgacctccaggtcc	11	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	194063112	194063112	C	A	SNP	CPN2	ENST00000323830	human	ensembl	69_37n	-1	known	missense	c.320	p.S107I	0.748	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772	54	0	0	58	14	19.44	-	-	-	A	194063112	C	A	194063112	3	1	240	1	0	0	0	0	1	0	0	0	3840	565	20	4	1321	4	CPN2	3	194063112	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4356365	194063112	3959318	1157	20007										
CPN2	0	genome.wustl.edu	37	chr3	194063182	194063182	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcctaaactggcagagctGagtgttgaggaagaccacct	13	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	194063182	194063182	G	A	SNP	CPN2	ENST00000323830	human	ensembl	69_37n	-1	known	nonsense	c.250	p.Q84*	0.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772	62	0	0	61	22	26.51	-	-	-	A	194063182	G	A	194063182	4	1	240	1	0	0	0	0	0	1	0	0	3840	1299	45	2	1391	2	CPN2	3	194063182	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	70	194063182	3959248	1158	20008										
GP5	0	genome.wustl.edu	37	chr3	194117360	194117360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctctctctgattaattttCgaaagagttggccaatttta	6	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	194117360	194117360	C	T	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	missense	c.1652	p.R551Q	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	14	0	0	24	5	17.24	-	-	-	T	194117360	C	T	194117360	3	4	240	1	0	0	0	0	1	0	0	0	6633	884	31	1	34	1	GP5	3	194117360	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54178	194117360	3905070	1159	20009										
LSG1	0	genome.wustl.edu	37	chr3	194373529	194373529	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaaagagctccagtaactCctgcttggataccagatggc	9	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	194373529	194373529	C	G	SNP	LSG1	ENST00000265245	human	ensembl	69_37n	-1	known	missense	c.1102	p.E368Q	1.000	NULL	pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802	107	0	0	86	24	21.82	-	-	-	G	194373529	C	G	194373529	3	3	240	1	0	0	0	0	1	0	0	0	9115	864	30	2	902	2	LSG1	3	194373529	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	256169	194373529	3648901	1160	20010										
PCYT1A	0	genome.wustl.edu	37	chr3	195974465	195974465	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagccaccgacctctcccatCttctcccactgcttaggact	5	19	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	195974465	195974465	C	T	SNP	PCYT1A	ENST00000444822	human	ensembl	69_37n	-1	known	silent	c.384	p.K128	0.000	NULL	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1A	HGNC	ENSG00000161217	72	0	0	69	13	15.85	-	-	-	T	195974465	C	T	195974465	2	4	240	1	0	0	0	0	0	0	0	1	11683	928	32	2		2	PCYT1A	3	195974465	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1600936	195974465	2047965	1161	20011										
UBXN7	0	genome.wustl.edu	37	chr3	196089178	196089178	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacttaccatttacatctatCccctccactactccatctgc	1	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	196089178	196089178	C	T	SNP	UBXN7	ENST00000296328	human	ensembl	69_37n	-1	known	silent	c.1215	p.G405	0.140	smart_UBX,pirsf_UCP037991_UAS/UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960	88	0	0	92	22	19.3	-	-	-	T	196089178	C	T	196089178	2	4	240	1	0	0	0	0	0	0	0	1	17015	842	30	2		2	UBXN7	3	196089178	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	114713	196089178	1933252	1162	20012										
NCBP2	0	genome.wustl.edu	37	chr3	196663913	196663913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgccagttttccatagcctCctctcccagcatcgtagtcc	7	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	196663913	196663913	C	G	SNP	NCBP2	ENST00000321256	human	ensembl	69_37n	-1	known	missense	c.440	p.G147A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NCBP2	HGNC	ENSG00000114503	138	0	0	114	21	15.56	-	-	-	G	196663913	C	G	196663913	3	3	240	1	0	0	0	0	1	0	0	0	10284	855	30	2	34	2	NCBP2	3	196663913	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	574735	196663913	1358517	1163	20013										
KIAA0226	0	genome.wustl.edu	37	chr3	197409354	197409354	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactcacgttggggctggatGaacattaaaaattatctgag	10	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	197409354	197409354	G	A	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.2113	p.H705Y	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	44	0	0	26	20	43.48	-	-	-	A	197409354	G	A	197409354	3	1	240	1	0	0	0	0	1	0	0	0	8214	1290	45	2	833	2	KIAA0226	3	197409354	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	745441	197409354	613076	1164	20014										
LRCH3	0	genome.wustl.edu	37	chr3	197562688	197562688	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaacagcggcgaatctctCatgaggtagtacacagattg	11	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	3	197562688	197562688	C	T	SNP	LRCH3	ENST00000438796	human	ensembl	69_37n	1	known	missense	c.1246	p.H416Y	0.992	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	75	0	0	72	19	20.88	-	-	-	T	197562688	C	T	197562688	3	4	240	1	0	0	0	0	1	0	0	0	9000	826	29	2	1280	2	LRCH3	3	197562688	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	153334	197562688	459742	1165	20015										
ZNF595	0	genome.wustl.edu	37	chr4	86956	86956	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaagcttttaaccaatcctCaggccttattatacacagga	5	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	86956	86956	C	G	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	60	0	0	49	13	20.97	-	-	-	G	86956	C	G	86956	1	3	240	0	1	0	0	0	0	0	0	0	18121	827	29	2		2	ZNF595	4	86956	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		86956	191067320	1166	20016										
ZNF595	0	genome.wustl.edu	37	chr4	87051	87051	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcggtccacagccctgaatGaacataagaaaattcattct	6	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87051	87051	G	A	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	37	0	0	44	11	20	-	-	-	A	87051	G	A	87051	1	1	240	0	1	0	0	0	0	0	0	0	18121	1290	45	2		2	ZNF595	4	87051	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	95	87051	191067225	1167	20017										
ZNF718	0	genome.wustl.edu	37	chr4	155782	155782	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaagcctttaaacagtcctCacacttgaataaacataaga	4	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	155782	155782	C	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	52	0	0	23	25	52.08	-	-	-	T	155782	C	T	155782	1	4	240	0	1	0	0	0	0	0	0	0	18216	838	29	2		2	ZNF718	4	155782	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68731	155782	190998494	1168	20018										
PIGG	0	genome.wustl.edu	37	chr4	502673	502673	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtggtgaccatggcatgtCtgaaacaggaagtcacgggg	15	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	502673	502673	C	T	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.815	p.S272F	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	130	0	0	94	38	28.79	-	-	-	T	502673	C	T	502673	3	4	240	1	0	0	0	0	1	0	0	0	11962	913	32	2	833	2	PIGG	4	502673	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	346891	502673	190651603	1169	20019										
SPON2	0	genome.wustl.edu	37	chr4	1161404	1161404	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccgcacagtccccaggaCgaccacagggagacctcgca	10	18	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	1161404	1161404	C	G	SNP	SPON2	ENST00000290902	human	ensembl	69_37n	-1	known	silent	c.852	p.S284	0.401	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Spondin_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Spondin_N,pfscan_Thrombospondin_1_rpt	-	no_errors	SPON2	HGNC	ENSG00000159674	23	0	0	12	10	45.45	-	-	-	G	1161404	C	G	1161404	2	3	240	1	0	0	0	0	0	0	0	1	15174	523	19	3		3	SPON2	4	1161404	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	658731	1161404	189992872	1170	20020										
CTBP1	0	genome.wustl.edu	37	chr4	1222122	1222122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcagggcccccacagcctCgttcaggacctgcagcgaga	11	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	1222122	1222122	C	T	SNP	CTBP1	ENST00000290921	human	ensembl	69_37n	-1	known	missense	c.205	p.E69K	1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692	68	0	0	48	18	27.27	-	-	-	T	1222122	C	T	1222122	3	4	240	1	0	0	0	0	1	0	0	0	4029	893	31	1	1145	1	CTBP1	4	1222122	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60718	1222122	189932154	1171	20021										
CTBP1	0	genome.wustl.edu	37	chr4	1232007	1232007	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcgtggactgcgcgtcgcaGaaggccacagtggccacgtc	15	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	1232007	1232007	G	A	SNP	CTBP1	ENST00000290921	human	ensembl	69_37n	-1	known	silent	c.159	p.F53	1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692	10	0	0	9	4	30.77	-	-	-	A	1232007	G	A	1232007	2	1	240	1	0	0	0	0	0	0	0	1	4029	933	33	2		2	CTBP1	4	1232007	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9885	1232007	189922269	1172	20022										
WHSC2	0	genome.wustl.edu	37	chr4	1986609	1986609	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggagggaaggtagctcgtgGagggcagcgcaggctcattg	19	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	1986609	1986609	G	C	SNP	WHSC2	ENST00000382882	human	ensembl	69_37n	-1	known	missense	c.995	p.S332C	1.000	NULL	NULL	-	no_errors	WHSC2	HGNC	ENSG00000185049	113	0	0	75	28	27.18	-	-	-	C	1986609	G	C	1986609	3	2	240	1	0	0	0	0	1	0	0	0	17461	1174	41	2	640	2	WHSC2	4	1986609	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	754602	1986609	189167667	1173	20023										
TNIP2	0	genome.wustl.edu	37	chr4	2744011	2744011	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcactcagccacatgcctGaggagctcttccccttgctc	8	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	2744011	2744011	G	A	SNP	TNIP2	ENST00000315423	human	ensembl	69_37n	-1	known	silent	c.1263	p.L421	0.989	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884	27	0	0	28	11	28.21	-	-	-	A	2744011	G	A	2744011	2	1	240	1	0	0	0	0	0	0	0	1	16410	1277	45	2		2	TNIP2	4	2744011	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	757402	2744011	188410265	1174	20024										
HTT	0	genome.wustl.edu	37	chr4	3133049	3133049	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgacattggacagtccactGatgatgactctgcacctctt	9	11	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	3133049	3133049	G	A	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.2023	p.D675N	0.938	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	116	0	0	92	28	23.33	-	-	-	A	3133049	G	A	3133049	3	1	240	1	0	0	0	0	1	0	0	0	7511	1290	45	2	2081	2	HTT	4	3133049	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	389038	3133049	188021227	1175	20025										
HTT	0	genome.wustl.edu	37	chr4	3235057	3235057	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatcagcgactatctcctCtccaacctgaaagggatcgc	8	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	3235057	3235057	C	T	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	silent	c.8433	p.L2811	0.974	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	12	0	0	8	9	52.94	-	-	-	T	3235057	C	T	3235057	2	4	240	1	0	0	0	0	0	0	0	1	7511	900	32	2		2	HTT	4	3235057	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102008	3235057	187919219	1176	20026										
RGS12	0	genome.wustl.edu	37	chr4	3441334	3441334	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggtgggcctcctacatcaGacctccctggcttgggcccc	12	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	3441334	3441334	G	C	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	missense	c.4267	p.D1423H	0.002	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	10	0	0	10	4	28.57	-	-	-	C	3441334	G	C	3441334	3	2	240	1	0	0	0	0	1	0	0	0	13379	942	33	2	4408	2	RGS12	4	3441334	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	206277	3441334	187712942	1177	20027										
LYAR	0	genome.wustl.edu	37	chr4	4276354	4276354	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttctgccgttcttcctttCtttctcttttattcttcttc	2	13	7	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	4276354	4276354	C	G	SNP	LYAR	ENST00000343470	human	ensembl	69_37n	-1	known	missense	c.572	p.R191T	0.573	NULL	pfam_Znf_C2H2_LYAR	-	no_errors	LYAR	HGNC	ENSG00000145220	209	0	0	167	48	22.33	-	-	-	G	4276354	C	G	4276354	3	3	240	1	0	0	0	0	1	0	0	0	9170	913	32	2	583	2	LYAR	4	4276354	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	835020	4276354	186877922	1178	20028										
ZBTB49	0	genome.wustl.edu	37	chr4	4317653	4317653	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggaagttagtaaagcacaGaattcggcacacgggggagc	14	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	4317653	4317653	G	T	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	missense	c.1577	p.R526I	0.501	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	73	0	0	53	23	30.26	-	-	-	T	4317653	G	T	4317653	3	4	240	1	0	0	0	0	1	0	0	0	17646	942	33	2	1599	2	ZBTB49	4	4317653	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41299	4317653	186836623	1179	20029										
CRMP1	0	genome.wustl.edu	37	chr4	5862760	5862760	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgtcactcactgatcatCgtggtcccgcccaccagtgc	9	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	5862760	5862760	C	T	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	silent	c.648	p.T216	0.993	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	74	0	0	41	15	26.79	-	-	-	T	5862760	C	T	5862760	2	4	240	1	0	0	0	0	0	0	0	1	3920	871	31	1		1	CRMP1	4	5862760	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1545107	5862760	185291516	1180	20030										
JAKMIP1	0	genome.wustl.edu	37	chr4	6087285	6087285	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagaagcagcttctgggtCtgcccagcctgcacgccaag	12	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	6087285	6087285	C	T	SNP	JAKMIP1	ENST00000409021	human	ensembl	69_37n	-1	known	silent	c.696	p.Q232	0.999	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969	62	0	0	46	14	23.33	-	-	-	T	6087285	C	T	6087285	2	4	240	1	0	0	0	0	0	0	0	1	7994	912	32	2		2	JAKMIP1	4	6087285	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	224525	6087285	185066991	1181	20031										
MRFAP1L1	0	genome.wustl.edu	37	chr4	6711285	6711285	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accgggagcaggaactgctcGaaatcctcctcgggctccag	12	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	6711285	6711285	G	A	SNP	MRFAP1L1	ENST00000320848	human	ensembl	69_37n	-1	known	silent	c.72	p.F24	0.997	NULL	NULL	-	no_errors	MRFAP1L1	HGNC	ENSG00000178988	47	0	0	29	30	50.85	-	-	-	A	6711285	G	A	6711285	2	1	240	1	0	0	0	0	0	0	0	1	9834	1049	37	1		1	MRFAP1L1	4	6711285	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	624000	6711285	184442991	1182	20032										
KIAA0232	0	genome.wustl.edu	37	chr4	6858918	6858918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatcgagactttagtggagGagctctgctccagactgaaa	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	6858918	6858918	G	A	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.397	p.E133K	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	61	0	0	44	16	26.67	-	-	-	A	6858918	G	A	6858918	3	1	240	1	0	0	0	0	1	0	0	0	8215	1175	41	2	407	2	KIAA0232	4	6858918	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	147633	6858918	184295358	1183	20033										
KIAA0232	0	genome.wustl.edu	37	chr4	6860154	6860154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttttgtttcataacagaaGagaagattcacaaaaagtta	6	4	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	6860154	6860154	G	C	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.439	p.E147Q	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	32	0	0	37	8	17.78	-	-	-	C	6860154	G	C	6860154	3	2	240	1	0	0	0	0	1	0	0	0	8215	943	33	2	453	2	KIAA0232	4	6860154	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1236	6860154	184294122	1184	20034										
KIAA0232	0	genome.wustl.edu	37	chr4	6863238	6863238	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaaagaaatagggagaaaaGatcctgggagcactgaagga	13	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	6863238	6863238	G	C	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.1129	p.D377H	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	51	0	0	41	11	21.15	-	-	-	C	6863238	G	C	6863238	3	2	240	1	0	0	0	0	1	0	0	0	8215	942	33	2	1147	2	KIAA0232	4	6863238	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3084	6863238	184291038	1185	20035										
DRD5	0	genome.wustl.edu	37	chr4	9784334	9784334	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaatcgaacctacgccatCtcttcctcgctcatcagctt	5	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	9784334	9784334	C	G	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	1	known	missense	c.681	p.I227M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	51	0	0	54	9	14.29	-	-	-	G	9784334	C	G	9784334	3	3	240	1	0	0	0	0	1	0	0	0	4795	903	32	2	683	2	DRD5	4	9784334	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2921096	9784334	181369942	1186	20036										
SLC2A9	0	genome.wustl.edu	37	chr4	9987380	9987380	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccatcagcaatgcagcagAaattgcaaacccattattgg	9	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	9987380	9987380	A	T	SNP	SLC2A9	ENST00000264784	human	ensembl	69_37n	-1	known	missense	c.448	p.S150T	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667	43	0	0	45	14	23.73	-	-	-	T	9987380	A	T	9987380	3	4	240	1	0	0	0	0	1	0	0	0	14641	246	9	5	1210	5	SLC2A9	4	9987380	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	203046	9987380	181166896	1187	20037										
CC2D2A	0	genome.wustl.edu	37	chr4	15559041	15559041	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatccaaacgatttaggcttCttcatcttagaagccaagag	8	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	15559041	15559041	C	T	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.2740	p.L914F	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	92	0	0	50	12	19.35	-	-	-	T	15559041	C	T	15559041	3	4	240	1	0	0	0	0	1	0	0	0	2753	913	32	2	3021	2	CC2D2A	4	15559041	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5571661	15559041	175595235	1188	20038										
BST1	0	genome.wustl.edu	37	chr4	15733439	15733439	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcttatcattcccctctttCtggtgctggcttccaggact	8	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	15733439	15733439	C	T	SNP	BST1	ENST00000265016	human	ensembl	69_37n	1	known	silent	c.928	p.L310	0.009	NULL	pfam_ADP-ribosyl_cyclase	-	no_errors	BST1	HGNC	ENSG00000109743	73	0	0	37	17	31.48	-	-	-	T	15733439	C	T	15733439	2	4	240	1	0	0	0	0	0	0	0	1	1541	912	32	2		2	BST1	4	15733439	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	174398	15733439	175420837	1189	20039										
TAPT1	0	genome.wustl.edu	37	chr4	16177804	16177804	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaatatccacggcaatttCtgatgcaattaccatacaga	5	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	16177804	16177804	C	G	SNP	TAPT1	ENST00000405303	human	ensembl	69_37n	-1	known	missense	c.1045	p.E349Q	1.000	pfam_Membrane_Tatp1/CMV_rcpt	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762	105	0	0	69	21	23.33	-	-	-	G	16177804	C	G	16177804	3	3	240	1	0	0	0	0	1	0	0	0	15646	922	32	2	682	2	TAPT1	4	16177804	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	444365	16177804	174976472	1190	20040										
TAPT1	0	genome.wustl.edu	37	chr4	16188198	16188198	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agattgttcttttcaaacttCttgaaaacacttcctttaat	3	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	16188198	16188198	C	T	SNP	TAPT1	ENST00000513782	human	ensembl	69_37n	-1	known	missense	c.253	p.E85K	1.000	pfam_Membrane_Tatp1/CMV_rcpt	pfam_Membrane_Tatp1/CMV_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAPT1	HGNC	ENSG00000169762	105	0	0	77	17	18.09	-	-	-	T	16188198	C	T	16188198	3	4	240	1	0	0	0	0	1	0	0	0	15646	912	32	2	859	2	TAPT1	4	16188198	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10394	16188198	174966078	1191	20041										
QDPR	0	genome.wustl.edu	37	chr4	17493920	17493920	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcccagccaggctctggcaGagctggtgaacagcaccctt	11	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	17493920	17493920	G	C	SNP	QDPR	ENST00000281243	human	ensembl	69_37n	-1	known	silent	c.480	p.L160	0.998	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR	-	no_errors	QDPR	HGNC	ENSG00000151552	29	0	0	7	15	68.18	-	-	-	C	17493920	G	C	17493920	2	2	240	1	0	0	0	0	0	0	0	1	12955	929	33	2		2	QDPR	4	17493920	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1305722	17493920	173660356	1192	20042										
SLIT2	0	genome.wustl.edu	37	chr4	20620617	20620617	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggtgaagtgcggctgtacGaggtgtgtgtcctaaacaca	15	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	20620617	20620617	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	silent	c.4575	p.T1525	0.953	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	81	0	0	59	15	20	-	-	-	A	20620617	G	A	20620617	2	1	240	1	0	0	0	0	0	0	0	1	14829	1045	37	1		1	SLIT2	4	20620617	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3126697	20620617	170533659	1193	20043										
GPR125	0	genome.wustl.edu	37	chr4	22414830	22414830	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaactgcatagttactaaggGagtagcactgaatcgtagtg	11	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	22414830	22414830	G	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2207	p.S736C	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	91	0	0	72	15	17.24	-	-	-	C	22414830	G	C	22414830	3	2	240	1	0	0	0	0	1	0	0	0	6689	1174	41	2	1782	2	GPR125	4	22414830	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1794213	22414830	168739446	1194	20044										
PPARGC1A	0	genome.wustl.edu	37	chr4	23797539	23797539	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcagggtcaaagtcatctGagtttgaatctgaaaaaaaa	9	5	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	23797539	23797539	G	C	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	nonsense	c.2303	p.S768*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	61	0	0	52	17	24.64	-	-	-	C	23797539	G	C	23797539	4	2	240	1	0	0	0	0	0	1	0	0	12373	1294	45	2	97	2	PPARGC1A	4	23797539	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1382709	23797539	167356737	1195	20045										
DHX15	0	genome.wustl.edu	37	chr4	24578092	24578092	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaatgagcagaatgtgttGaatgcgttgaatgtgctgag	14	3	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	24578092	24578092	G	C	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	nonsense	c.281	p.S94*	0.955	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	239	0	0	171	49	22.27	-	-	-	C	24578092	G	C	24578092	4	2	240	1	0	0	0	0	0	1	0	0	4537	1294	45	2	2158	2	DHX15	4	24578092	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	780553	24578092	166576184	1196	20046										
ZCCHC4	0	genome.wustl.edu	37	chr4	25334905	25334905	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggcaacatagtgagcatCaggttctgggtaatgtgtcc	15	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	25334905	25334905	C	G	SNP	ZCCHC4	ENST00000505412	human	ensembl	69_37n	1	putative	nonsense	c.23	p.S8*	0.003	NULL	pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC4	HGNC	ENSG00000168228	126	0	0	99	40	28.78	-	-	-	G	25334905	C	G	25334905	4	3	240	1	0	0	0	0	0	1	0	0	17686	827	29	2	444	2	ZCCHC4	4	25334905	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	756813	25334905	165819371	1197	20047										
SEL1L3	0	genome.wustl.edu	37	chr4	25780709	25780709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtcttacacaacagctttCtcaggatctctagggaatgt	9	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	25780709	25780709	C	G	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.2574	p.E858D	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	102	0	0	49	26	34.67	-	-	-	G	25780709	C	G	25780709	3	3	240	1	0	0	0	0	1	0	0	0	14100	912	32	2	860	2	SEL1L3	4	25780709	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	445804	25780709	165373567	1198	20048										
SEL1L3	0	genome.wustl.edu	37	chr4	25806331	25806331	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttacagccttctcaaatatCttcccaccgatttctgatac	3	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	25806331	25806331	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	silent	c.1608	p.K536	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	136	0	0	107	31	22.46	-	-	-	T	25806331	C	T	25806331	2	4	240	1	0	0	0	0	0	0	0	1	14100	912	32	2		2	SEL1L3	4	25806331	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25622	25806331	165347945	1199	20049										
TLR10	0	genome.wustl.edu	37	chr4	38776671	38776671	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgggcaggctaccttcttCataatgaggaagagttctga	12	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	38776671	38776671	C	T	SNP	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	missense	c.541	p.E181K	1.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	72	0	0	37	8	17.78	-	-	-	T	38776671	C	T	38776671	3	4	240	1	0	0	0	0	1	0	0	0	16045	835	29	2	1898	2	TLR10	4	38776671	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12970340	38776671	152377605	1200	20050										
WDR19	0	genome.wustl.edu	37	chr4	39254873	39254873	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagctgtcaatattgttaGagagacccagtctctggatg	10	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	39254873	39254873	G	C	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	missense	c.2837	p.R946T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	41	0	0	35	11	23.91	-	-	-	C	39254873	G	C	39254873	3	2	240	1	0	0	0	0	1	0	0	0	17376	942	33	2	2935	2	WDR19	4	39254873	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	478202	39254873	151899403	1201	20051										
KLB	0	genome.wustl.edu	37	chr4	39436042	39436042	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatccagaggggatgagaaaGaagttgttctccgttctacc	11	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	39436042	39436042	G	A	SNP	KLB	ENST00000257408	human	ensembl	69_37n	1	known	silent	c.1038	p.K346	0.003	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962	81	0	0	82	29	26.13	-	-	-	A	39436042	G	A	39436042	2	1	240	1	0	0	0	0	0	0	0	1	8385	933	33	2		2	KLB	4	39436042	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	181169	39436042	151718234	1202	20052										
LIAS	0	genome.wustl.edu	37	chr4	39462576	39462576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacctaaaacgccagaaagGagaaaggtaattgaaaattt	8	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	39462576	39462576	G	A	SNP	LIAS	ENST00000261434	human	ensembl	69_37n	1	known	missense	c.212	p.G71E	1.000	pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897	31	0	0	25	7	21.88	-	-	-	A	39462576	G	A	39462576	3	1	240	1	0	0	0	0	1	0	0	0	8833	1174	41	2	218	2	LIAS	4	39462576	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26534	39462576	151691700	1203	20053										
RBM47	0	genome.wustl.edu	37	chr4	40440152	40440152	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcggtggtctcgatcatGaggttgcgcacgtagaggat	14	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	40440152	40440152	G	A	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	32	0	0	37	16	30.19	-	-	-	A	40440152	G	A	40440152	2	1	240	1	0	0	0	0	0	0	0	1	13224	1277	45	2		2	RBM47	4	40440152	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	977576	40440152	150714124	1204	20054										
UCHL1	0	genome.wustl.edu	37	chr4	41262732	41262732	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttagtcctaaagtgtacttCatgaagcagaccattgggaa	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	41262732	41262732	C	T	SNP	UCHL1	ENST00000284440	human	ensembl	69_37n	1	known	silent	c.243	p.F81	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL1	HGNC	ENSG00000154277	92	0	0	59	46	43.81	-	-	-	T	41262732	C	T	41262732	2	4	240	1	0	0	0	0	0	0	0	1	17017	825	29	2		2	UCHL1	4	41262732	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	822580	41262732	149891544	1205	20055										
UCHL1	0	genome.wustl.edu	37	chr4	41266170	41266170	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgccagttcagaggacaccCtgctgaaggtcatctttgga	12	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	41266170	41266170	C	T	SNP	UCHL1	ENST00000284440	human	ensembl	69_37n	1	known	silent	c.577	p.L193	0.037	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL1	HGNC	ENSG00000154277	78	0	0	64	13	16.88	-	-	-	T	41266170	C	T	41266170	2	4	240	1	0	0	0	0	0	0	0	1	17017	680	24	4		4	UCHL1	4	41266170	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3438	41266170	149888106	1206	20056										
DCAF4L1	0	genome.wustl.edu	37	chr4	41983923	41983923	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccagctaggtttcctcaaCgtcaccagttactcccgttt	7	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	41983923	41983923	C	T	SNP	DCAF4L1	ENST00000333141	human	ensembl	69_37n	1	known	silent	c.114	p.N38	0.517	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308	88	0	0	59	12	16.9	-	-	-	T	41983923	C	T	41983923	2	4	240	1	0	0	0	0	0	0	0	1	4303	535	19	1		1	DCAF4L1	4	41983923	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	717753	41983923	149170353	1207	20057										
ATP8A1	0	genome.wustl.edu	37	chr4	42590347	42590347	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcacatggcttggggctcaCtgtagtttggagttgagaag	15	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	42590347	42590347	C	G	SNP	ATP8A1	ENST00000381668	human	ensembl	69_37n	-1	known	splice_site	c.525-1	e8-1	1.000	-	-	-	no_errors	ATP8A1	HGNC	ENSG00000124406	133	0	0	99	28	22.05	-	-	-	G	42590347	C	G	42590347	5	3	240	1	0	0	0	0	0	0	1	0	1196	579	20	4	3090	4	ATP8A1	4	42590347	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	606424	42590347	148563929	1208	20058										
GUF1	0	genome.wustl.edu	37	chr4	44693782	44693782	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaattgtggtagatttttatGactctttgaaatccctatct	6	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	44693782	44693782	G	A	SNP	GUF1	ENST00000281543	human	ensembl	69_37n	1	known	missense	c.1579	p.D527N	1.000	pfam_Transl_elong_EFG/EF2_C,superfamily_Elongation_fac_G/III/V,tigrfam_EF-4	pfam_ProtSyn_GTP-bd,pfam_LepA_GTP-bd_C,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806	88	0	0	53	17	24.29	-	-	-	A	44693782	G	A	44693782	3	1	240	1	0	0	0	0	1	0	0	0	6950	1290	45	2	1629	2	GUF1	4	44693782	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2103435	44693782	146460494	1209	20059										
GABRG1	0	genome.wustl.edu	37	chr4	46067473	46067473	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagattttcttgagtttctGaagaaagtgtcaggaatcca	9	6	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	46067473	46067473	G	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.450	p.F150L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	99	0	0	76	19	20	-	-	-	C	46067473	G	C	46067473	3	2	240	1	0	0	0	0	1	0	0	0	6220	1281	45	2	971	2	GABRG1	4	46067473	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1373691	46067473	145086803	1210	20060										
GABRA4	0	genome.wustl.edu	37	chr4	46973157	46973157	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaaatgaaacttgagaaaGaatcactgtcataatgcacg	7	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	46973157	46973157	G	C	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.817	p.L273V	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	61	0	0	52	15	22.39	-	-	-	C	46973157	G	C	46973157	3	2	240	1	0	0	0	0	1	0	0	0	6212	942	33	2	859	2	GABRA4	4	46973157	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	905684	46973157	144181119	1211	20061										
ATP10D	0	genome.wustl.edu	37	chr4	47527619	47527619	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccagtaggatagaatgtGaaagcccaaacaatgacctc	8	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	47527619	47527619	G	A	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.736	p.E246K	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	79	0	0	59	10	14.49	-	-	-	A	47527619	G	A	47527619	3	1	240	1	0	0	0	0	1	0	0	0	1122	1291	45	2	750	2	ATP10D	4	47527619	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	554462	47527619	143626657	1212	20062										
TEC	0	genome.wustl.edu	37	chr4	48152923	48152923	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactgtgtacaagcctggttGactggaatcccttaccataa	9	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	48152923	48152923	G	A	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	nonsense	c.829	p.Q277*	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	TEC	HGNC	ENSG00000135605	95	0	0	56	11	16.42	-	-	-	A	48152923	G	A	48152923	4	1	240	1	0	0	0	0	0	1	0	0	15837	1299	45	2	1102	2	TEC	4	48152923	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	625304	48152923	143001353	1213	20063										
SLC10A4	0	genome.wustl.edu	37	chr4	48490953	48490953	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaccgctcagacttctctCtaaatgtggagatacacagg	9	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	48490953	48490953	C	G	SNP	SLC10A4	ENST00000273861	human	ensembl	69_37n	1	known	silent	c.1311	p.L437	0.906	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248	14	0	0	10	6	37.5	-	-	-	G	48490953	C	G	48490953	2	3	240	1	0	0	0	0	0	0	0	1	14465	900	32	2		2	SLC10A4	4	48490953	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	338030	48490953	142663323	1214	20064										
FRYL	0	genome.wustl.edu	37	chr4	48517136	48517136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctcttcacagactgactCggggtaactttcaggagcta	9	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	48517136	48517136	C	T	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.7846	p.E2616K	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	129	0	0	80	22	21.57	-	-	-	T	48517136	C	T	48517136	3	4	240	1	0	0	0	0	1	0	0	0	6113	893	31	1	1231	1	FRYL	4	48517136	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26183	48517136	142637140	1215	20065										
FRYL	0	genome.wustl.edu	37	chr4	48523130	48523130	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggggtctcatccctgatttGaagcacttcctctgttgtga	10	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	48523130	48523130	G	C	SNP	FRYL	ENST00000514617	human	ensembl	69_37n	-1	novel	nonsense	c.4232	p.S1411*	0.104	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRYL	HGNC	ENSG00000075539	121	0	0	98	23	19.01	-	-	-	C	48523130	G	C	48523130	4	2	240	1	0	0	0	0	0	1	0	0	6113	1299	45	2	1457	2	FRYL	4	48523130	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5994	48523130	142631146	1216	20066										
FRYL	0	genome.wustl.edu	37	chr4	48607770	48607770	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atacttacagcagctacaggGataagaatctccacaaataa	6	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	48607770	48607770	G	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.822	p.I274M	0.850	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	129	0	0	74	26	26	-	-	-	C	48607770	G	C	48607770	3	2	240	1	0	0	0	0	1	0	0	0	6113	1164	41	2	8435	2	FRYL	4	48607770	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	84640	48607770	142546506	1217	20067										
DCUN1D4	0	genome.wustl.edu	37	chr4	52752778	52752778	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcatggagaaattttgtGaagacattggtgttgaacca	12	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	52752778	52752778	G	A	SNP	DCUN1D4	ENST00000451288	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	1.000	NULL	pfam_PONY_dom	-	no_errors	DCUN1D4	HGNC	ENSG00000109184	141	0	0	110	28	20.29	-	-	-	A	52752778	G	A	52752778	3	1	240	1	0	0	0	0	1	0	0	0	4347	1291	45	2	410	2	DCUN1D4	4	52752778	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4145008	52752778	138401498	1218	20068										
DCUN1D4	0	genome.wustl.edu	37	chr4	52777334	52777334	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccagtttttcaccaattCttagaggtaccaaattgttg	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	52777334	52777334	C	G	SNP	DCUN1D4	ENST00000451288	human	ensembl	69_37n	1	known	missense	c.846	p.F282L	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D4	HGNC	ENSG00000109184	103	0	0	72	32	30.77	-	-	-	G	52777334	C	G	52777334	3	3	240	1	0	0	0	0	1	0	0	0	4347	912	32	2	748	2	DCUN1D4	4	52777334	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24556	52777334	138376942	1219	20069										
LRRC66	0	genome.wustl.edu	37	chr4	52862027	52862027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaggctgaaggcgacaagGaatgtgatgaacactgacag	13	9	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	52862027	52862027	G	T	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	missense	c.1161	p.F387L	0.250	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	57	0	0	46	13	22.03	-	-	-	T	52862027	G	T	52862027	3	4	240	1	0	0	0	0	1	0	0	0	9084	1165	41	2	1485	2	LRRC66	4	52862027	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	84693	52862027	138292249	1220	20070										
SCFD2	0	genome.wustl.edu	37	chr4	54231338	54231338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagcagtcttcttcctgttCtttgcaggggcataattggc	11	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	54231338	54231338	C	G	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	missense	c.771	p.K257N	1.000	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	64	0	0	72	20	21.74	-	-	-	G	54231338	C	G	54231338	3	3	240	1	0	0	0	0	1	0	0	0	13977	912	32	2	1319	2	SCFD2	4	54231338	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1369311	54231338	136922938	1221	20071										
PDGFRA	0	genome.wustl.edu	37	chr4	55156552	55156552	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgcatgcgtgtggactcaGacaatgcatacattggtgtc	11	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	55156552	55156552	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.2953	p.D985N	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	66	0	0	71	19	21.11	-	-	-	A	55156552	G	A	55156552	3	1	240	1	0	0	0	0	1	0	0	0	11734	942	33	2	3035	2	PDGFRA	4	55156552	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	925214	55156552	135997724	1222	20072										
KDR	0	genome.wustl.edu	37	chr4	55958879	55958879	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccttatacagatcttcagGagctgtccaaagaggcagga	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	55958879	55958879	G	C	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.2974	p.P992A	0.337	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	91	0	0	60	19	24.05	-	-	-	C	55958879	G	C	55958879	3	2	240	1	0	0	0	0	1	0	0	0	8192	1174	41	2	1132	2	KDR	4	55958879	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	802327	55958879	135195397	1223	20073										
SRD5A3	0	genome.wustl.edu	37	chr4	56225577	56225577	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgctttggtgccttactCaatctctgttcctgggagca	9	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	56225577	56225577	C	T	SNP	SRD5A3	ENST00000264228	human	ensembl	69_37n	1	known	nonsense	c.286	p.Q96*	0.023	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A3	HGNC	ENSG00000128039	239	0	0	177	40	18.43	-	-	-	T	56225577	C	T	56225577	4	4	240	1	0	0	0	0	0	1	0	0	15231	827	29	2	292	2	SRD5A3	4	56225577	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	266698	56225577	134928699	1224	20074										
TMEM165	0	genome.wustl.edu	37	chr4	56291609	56291609	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actatttataagccctgattCtggtttttaacaagctgttt	6	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	56291609	56291609	C	G	SNP	TMEM165	ENST00000381334	human	ensembl	69_37n	1	known	missense	c.965	p.S322C	1.000	NULL	pfam_UPF0016	-	no_errors	TMEM165	HGNC	ENSG00000134851	311	0	0	264	82	23.7	-	-	-	G	56291609	C	G	56291609	3	3	240	1	0	0	0	0	1	0	0	0	16175	913	32	2	987	2	TMEM165	4	56291609	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66032	56291609	134862667	1225	20075										
EXOC1	0	genome.wustl.edu	37	chr4	56762985	56762985	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaatttgctggacttgcaGaatcaatcttcaaaaatgct	7	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	56762985	56762985	G	C	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.2056	p.E686Q	1.000	pfam_Exocyst_Exoc1	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	90	0	0	47	14	22.95	-	-	-	C	56762985	G	C	56762985	3	2	240	1	0	0	0	0	1	0	0	0	5337	943	33	2	2114	2	EXOC1	4	56762985	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	471376	56762985	134391291	1226	20076										
CEP135	0	genome.wustl.edu	37	chr4	56840943	56840943	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actctggaggttgagaggatGagactagaacatggaataaa	13	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	56840943	56840943	G	A	SNP	CEP135	ENST00000257287	human	ensembl	69_37n	1	known	missense	c.1281	p.M427I	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP135	HGNC	ENSG00000174799	79	0	0	47	7	12.96	-	-	-	A	56840943	G	A	56840943	3	1	240	1	0	0	0	0	1	0	0	0	3276	1290	45	2	1319	2	CEP135	4	56840943	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77958	56840943	134313333	1227	20077										
AASDH	0	genome.wustl.edu	37	chr4	57221357	57221357	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaacccttacttgagagtaGagttaagagtcttctctgga	9	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	57221357	57221357	G	C	SNP	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	missense	c.1094	p.S365C	0.986	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	48	0	0	32	9	21.95	-	-	-	C	57221357	G	C	57221357	3	2	240	1	0	0	0	0	1	0	0	0	22	942	33	2	2242	2	AASDH	4	57221357	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	380414	57221357	133932919	1228	20078										
PAICS	0	genome.wustl.edu	37	chr4	57307916	57307916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaaaagtcctcctgcagtCcaaggaccagattacagcag	10	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	57307916	57307916	C	T	SNP	PAICS	ENST00000264221	human	ensembl	69_37n	1	known	missense	c.104	p.S35F	1.000	pfam_SAICAR_synth	pfam_SAICAR_synth,pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050	57	0	0	31	20	39.22	-	-	-	T	57307916	C	T	57307916	3	4	240	1	0	0	0	0	1	0	0	0	11468	855	30	2	110	2	PAICS	4	57307916	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86559	57307916	133846360	1229	20079										
POLR2B	0	genome.wustl.edu	37	chr4	57889525	57889525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccatttacgacaagctgGatgatgatggtttgatagct	11	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	57889525	57889525	G	A	SNP	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	missense	c.2545	p.D849N	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	74	0	0	53	22	29.33	-	-	-	A	57889525	G	A	57889525	3	1	240	1	0	0	0	0	1	0	0	0	12289	1174	41	2	2619	2	POLR2B	4	57889525	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	581609	57889525	133264751	1230	20080										
EPHA5	0	genome.wustl.edu	37	chr4	66467411	66467411	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttgcacatgcatttcccGatgggcaccagccactcccc	8	18	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	66467411	66467411	G	C	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.858	p.I286M	0.909	pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	80	0	0	56	16	22.22	-	-	-	C	66467411	G	C	66467411	3	2	240	1	0	0	0	0	1	0	0	0	5207	1048	37	3	2319	3	EPHA5	4	66467411	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8577886	66467411	124686865	1231	20081										
CENPC1	0	genome.wustl.edu	37	chr4	68385221	68385221	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaacttcatgggcctgaaCtagaagaaaattatataaag	8	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	68385221	68385221	C	G	SNP	CENPC1	ENST00000273853	human	ensembl	69_37n	-1	known	splice_site	c.332-1	e6-1	0.814	-	-	-	no_errors	CENPC1	HGNC	ENSG00000145241	83	0	0	49	17	25.76	-	-	-	G	68385221	C	G	68385221	5	3	240	1	0	0	0	0	0	0	1	0	3258	579	20	4	2556	4	CENPC1	4	68385221	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1917810	68385221	122769055	1232	20082										
TMPRSS11D	0	genome.wustl.edu	37	chr4	68693103	68693103	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgacactgttctcaagtctCacaagtgcaatgtcattttc	7	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	68693103	68693103	C	A	SNP	TMPRSS11D	ENST00000283916	human	ensembl	69_37n	-1	known	silent	c.828	p.V276	0.118	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_SEA,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802	87	0	0	78	13	14.29	-	-	-	A	68693103	C	A	68693103	2	1	240	1	0	0	0	0	0	0	0	1	16336	813	29	2		2	TMPRSS11D	4	68693103	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	307882	68693103	122461173	1233	20083										
UGT2B10	0	genome.wustl.edu	37	chr4	69683767	69683767	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagacccactacattatctGagacaatgaggaaagctgac	9	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	69683767	69683767	G	C	SNP	UGT2B10	ENST00000265403	human	ensembl	69_37n	1	known	missense	c.739	p.E247Q	0.609	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B10	HGNC	ENSG00000109181	196	0	0	136	31	18.56	-	-	-	C	69683767	G	C	69683767	3	2	240	1	0	0	0	0	1	0	0	0	17053	1291	45	2	745	2	UGT2B10	4	69683767	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	990664	69683767	121470509	1234	20084										
UGT2B7	0	genome.wustl.edu	37	chr4	69962845	69962845	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgttatgtcagaattaactGatcaaatgactttcatggag	8	5	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	69962845	69962845	G	A	SNP	UGT2B7	ENST00000305231	human	ensembl	69_37n	1	known	missense	c.607	p.D203N	0.865	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234	156	0	0	111	32	22.38	-	-	-	A	69962845	G	A	69962845	3	1	240	1	0	0	0	0	1	0	0	0	17059	1290	45	2	609	2	UGT2B7	4	69962845	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	279078	69962845	121191431	1235	20085										
STATH	0	genome.wustl.edu	37	chr4	70865397	70865397	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctaagggagctgattcatCtgaagaggtgagtcattttc	11	6	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	70865397	70865397	C	G	SNP	STATH	ENST00000246895	human	ensembl	69_37n	1	known	missense	c.65	p.S22C	0.003	pfam_Statherin	pfam_Statherin	-	no_errors	STATH	HGNC	ENSG00000126549	318	0	0	212	77	26.64	-	-	-	G	70865397	C	G	70865397	3	3	240	1	0	0	0	0	1	0	0	0	15362	913	32	2	71	2	STATH	4	70865397	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	902552	70865397	120288879	1236	20086										
SMR3B	0	genome.wustl.edu	37	chr4	71255434	71255434	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccacctggaccgctggctCctcctcaaccttttggccca	7	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	71255434	71255434	C	T	SNP	SMR3B	ENST00000304915	human	ensembl	69_37n	1	known	missense	c.109	p.P37S	0.072	NULL	NULL	-	no_errors	SMR3B	HGNC	ENSG00000171201	90	0	0	82	21	20.39	-	-	-	T	71255434	C	T	71255434	3	4	240	1	0	0	0	0	1	0	0	0	14901	855	30	2	115	2	SMR3B	4	71255434	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	390037	71255434	119898842	1237	20087										
ENAM	0	genome.wustl.edu	37	chr4	71510192	71510192	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactgttgaccttactcctGagcagcttgttattggtaca	9	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	71510192	71510192	G	A	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.3049	p.E1017K	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	72	0	0	59	12	16.9	-	-	-	A	71510192	G	A	71510192	3	1	240	1	0	0	0	0	1	0	0	0	5149	1291	45	2	3079	2	ENAM	4	71510192	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	254758	71510192	119644084	1238	20088										
UTP3	0	genome.wustl.edu	37	chr4	71555085	71555085	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaactcttggagctgataGaagacctgaaagtcaagttg	11	7	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	71555085	71555085	G	C	SNP	UTP3	ENST00000254803	human	ensembl	69_37n	1	known	missense	c.691	p.E231Q	0.956	pfam_Sas10/Utp3/C1D	pfam_Sas10_C,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	32	0	0	24	7	22.58	-	-	-	C	71555085	G	C	71555085	3	2	240	1	0	0	0	0	1	0	0	0	17198	943	33	2	693	2	UTP3	4	71555085	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44893	71555085	119599191	1239	20089										
DCK	0	genome.wustl.edu	37	chr4	71888182	71888182	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaaacatatgcctgtctCagtcgaataagagctcagct	7	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	71888182	71888182	C	G	SNP	DCK	ENST00000286648	human	ensembl	69_37n	1	known	silent	c.306	p.L102	1.000	pfam_Deoxynucleoside_kinase	pfam_Deoxynucleoside_kinase	-	no_errors	DCK	HGNC	ENSG00000156136	99	0	0	78	27	25.71	-	-	-	G	71888182	C	G	71888182	2	3	240	1	0	0	0	0	0	0	0	1	4321	813	29	2		2	DCK	4	71888182	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	333097	71888182	119266094	1240	20090										
ADAMTS3	0	genome.wustl.edu	37	chr4	73414401	73414401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccccaggagctactagttGagtgttgggctttagtcgca	13	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	73414401	73414401	G	C	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.298	p.Q100E	0.999	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	124	0	0	88	26	22.81	-	-	-	C	73414401	G	C	73414401	3	2	240	1	0	0	0	0	1	0	0	0	267	1299	45	2	3399	2	ADAMTS3	4	73414401	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1526219	73414401	117739875	1241	20091										
USO1	0	genome.wustl.edu	37	chr4	76726388	76726388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattgcgagaagagatagaaGaattaaaacgtaatcaggaa	11	3	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	76726388	76726388	G	C	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.2248	p.E750Q	1.000	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	68	0	0	55	10	15.38	-	-	-	C	76726388	G	C	76726388	3	2	240	1	0	0	0	0	1	0	0	0	17136	943	33	2	2136	2	USO1	4	76726388	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3311987	76726388	114427888	1242	20092										
STBD1	0	genome.wustl.edu	37	chr4	77230616	77230616	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttctagcaacctgctcaaGaacagagctaaagaagaaat	7	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	77230616	77230616	G	C	SNP	STBD1	ENST00000237642	human	ensembl	69_37n	1	known	missense	c.540	p.K180N	0.791	NULL	pfam_CBM_fam20,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	-	no_errors	STBD1	HGNC	ENSG00000118804	40	0	0	52	16	23.53	-	-	-	C	77230616	G	C	77230616	3	2	240	1	0	0	0	0	1	0	0	0	15365	933	33	2	546	2	STBD1	4	77230616	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	504228	77230616	113923660	1243	20093										
SHROOM3	0	genome.wustl.edu	37	chr4	77660065	77660065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagtccaccggcagcattGaccagctcagccacttccat	7	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	77660065	77660065	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.739	p.D247N	1.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	36	0	0	38	10	20.83	-	-	-	A	77660065	G	A	77660065	3	1	240	1	0	0	0	0	1	0	0	0	14384	1290	45	2	757	2	SHROOM3	4	77660065	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	429449	77660065	113494211	1244	20094										
SHROOM3	0	genome.wustl.edu	37	chr4	77660746	77660746	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctacccggtaccttccctgGagccacactttgcccaggtg	9	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	77660746	77660746	G	C	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.1420	p.E474Q	1.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	48	0	0	39	16	29.09	-	-	-	C	77660746	G	C	77660746	3	2	240	1	0	0	0	0	1	0	0	0	14384	1175	41	2	1438	2	SHROOM3	4	77660746	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	681	77660746	113493530	1245	20095										
FRAS1	0	genome.wustl.edu	37	chr4	79229317	79229317	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgagagatggcggctgtgaGagcagctgtggaaaaggctt	17	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	79229317	79229317	G	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.1632	p.E544D	0.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	82	0	0	48	39	44.83	-	-	-	C	79229317	G	C	79229317	3	2	240	1	0	0	0	0	1	0	0	0	6090	933	33	2	1690	2	FRAS1	4	79229317	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1568571	79229317	111924959	1246	20096										
FRAS1	0	genome.wustl.edu	37	chr4	79367922	79367922	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatgaccttgcagcccctCagagtgcagctgagctcggg	14	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	79367922	79367922	C	T	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	nonsense	c.583	p.Q195*	0.045	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	73	0	0	58	21	26.58	-	-	-	T	79367922	C	T	79367922	4	4	240	1	0	0	0	0	0	1	0	0	6090	813	29	2	6143	2	FRAS1	4	79367922	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	138605	79367922	111786354	1247	20097										
PRDM8	0	genome.wustl.edu	37	chr4	81123172	81123172	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagagacttcacagcgctGatataagtccccaagacgaa	8	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	81123172	81123172	G	A	SNP	PRDM8	ENST00000339711	human	ensembl	69_37n	1	known	missense	c.556	p.D186N	0.647	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784	38	0	0	23	5	17.86	-	-	-	A	81123172	G	A	81123172	3	1	240	1	0	0	0	0	1	0	0	0	12543	1290	45	2	566	2	PRDM8	4	81123172	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1755250	81123172	110031104	1248	20098										
PRKG2	0	genome.wustl.edu	37	chr4	82027078	82027078	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatcatttggtcaaccccaGaaaagggtgggctagataga	11	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	82027078	82027078	G	A	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	missense	c.1952	p.S651F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	90	0	0	65	20	23.53	-	-	-	A	82027078	G	A	82027078	3	1	240	1	0	0	0	0	1	0	0	0	12604	942	33	2	352	2	PRKG2	4	82027078	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	903906	82027078	109127198	1249	20099										
RASGEF1B	0	genome.wustl.edu	37	chr4	82368682	82368682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcattatccaaagggtccttCtgcacgaacgcctgaacaaa	7	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	82368682	82368682	C	G	SNP	RASGEF1B	ENST00000264400	human	ensembl	69_37n	-1	known	missense	c.705	p.Q235H	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670	91	0	0	68	20	22.73	-	-	-	G	82368682	C	G	82368682	3	3	240	1	0	0	0	0	1	0	0	0	13153	912	32	2	752	2	RASGEF1B	4	82368682	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	341604	82368682	108785594	1250	20100										
TMEM150C	0	genome.wustl.edu	37	chr4	83406675	83406675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgatggtttacacctggtCagtctgatattcagaagctt	9	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	83406675	83406675	C	T	SNP	TMEM150C	ENST00000449862	human	ensembl	69_37n	-1	known	missense	c.739	p.D247N	1.000	NULL	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150C	HGNC	ENSG00000249242	51	0	0	37	19	33.93	-	-	-	T	83406675	C	T	83406675	3	4	240	1	0	0	0	0	1	0	0	0	16164	826	29	2	14	2	TMEM150C	4	83406675	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1037993	83406675	107747601	1251	20101										
THAP9	0	genome.wustl.edu	37	chr4	83828937	83828937	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaaaaaatttattttaacaGattttaagtgggagttatat	6	1	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	83828937	83828937	G	A	SNP	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	splice_site	c.581-1	e4-1	1.000	-	-	-	no_errors	THAP9	HGNC	ENSG00000168152	87	0	0	37	26	41.27	-	-	-	A	83828937	G	A	83828937	5	1	240	1	0	0	0	0	0	0	1	0	15946	956	33	2	594	2	THAP9	4	83828937	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	422262	83828937	107325339	1252	20102										
THAP9	0	genome.wustl.edu	37	chr4	83839313	83839313	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagatacaaatttcaagatGaagtttttctaagcaaagta	6	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	83839313	83839313	G	C	SNP	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	missense	c.1948	p.E650Q	0.227	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	39	0	0	31	6	16.22	-	-	-	C	83839313	G	C	83839313	3	2	240	1	0	0	0	0	1	0	0	0	15946	1291	45	2	1966	2	THAP9	4	83839313	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10376	83839313	107314963	1253	20103										
WDFY3	0	genome.wustl.edu	37	chr4	85638146	85638146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagggccttgcctggctcctCtaggaataataggctcatgc	11	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	85638146	85638146	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.7778	p.R2593T	0.993	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	67	0	0	40	10	20	-	-	-	G	85638146	C	G	85638146	3	3	240	1	0	0	0	0	1	0	0	0	17367	913	32	2	2882	2	WDFY3	4	85638146	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1798833	85638146	105516130	1254	20104										
WDFY3	0	genome.wustl.edu	37	chr4	85710959	85710959	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctttgctcattaccaggaCcaaatgatgccactgtccct	7	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	85710959	85710959	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.3589	p.V1197F	1.000	superfamily_ConA-like_lec_gl	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	68	0	0	70	23	24.73	-	-	-	A	85710959	C	A	85710959	3	1	240	1	0	0	0	0	1	0	0	0	17367	507	18	4	7179	4	WDFY3	4	85710959	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72813	85710959	105443317	1255	20105										
MAPK10	0	genome.wustl.edu	37	chr4	87023066	87023066	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctgtgaataattccagcaGaatggaggtgcttaatgcca	10	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87023066	87023066	G	C	SNP	MAPK10	ENST00000359221	human	ensembl	69_37n	-1	known	missense	c.545	p.S182C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK10	HGNC	ENSG00000109339	97	0	0	77	36	31.86	-	-	-	C	87023066	G	C	87023066	3	2	240	1	0	0	0	0	1	0	0	0	9343	942	33	2	886	2	MAPK10	4	87023066	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1312107	87023066	104131210	1256	20106										
PTPN13	0	genome.wustl.edu	37	chr4	87653744	87653744	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtttattttttcaattgtaGactaagaaagggaagaatga	9	3	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87653744	87653744	G	C	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	splice_site	c.1684-1	e11-1	1.000	-	-	-	no_errors	PTPN13	HGNC	ENSG00000163629	78	0	0	48	42	46.67	-	-	-	C	87653744	G	C	87653744	5	2	240	1	0	0	0	0	0	0	1	0	12863	956	33	2	1725	2	PTPN13	4	87653744	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	630678	87653744	103500532	1257	20107										
PTPN13	0	genome.wustl.edu	37	chr4	87653856	87653856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatatgtaaagatgtgtttGatatggttgtggcacatatt	10	3	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87653856	87653856	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.1795	p.D599N	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	109	0	0	57	55	49.11	-	-	-	A	87653856	G	A	87653856	3	1	240	1	0	0	0	0	1	0	0	0	12863	1290	45	2	1837	2	PTPN13	4	87653856	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	112	87653856	103500420	1258	20108										
PTPN13	0	genome.wustl.edu	37	chr4	87671906	87671906	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctcagtcaggcctctctCtatccacatcggaaaaatgt	7	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87671906	87671906	C	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	silent	c.2934	p.L978	0.969	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	55	0	0	47	14	22.95	-	-	-	G	87671906	C	G	87671906	2	3	240	1	0	0	0	0	0	0	0	1	12863	900	32	2		2	PTPN13	4	87671906	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18050	87671906	103482370	1259	20109										
PTPN13	0	genome.wustl.edu	37	chr4	87707075	87707075	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgatggttcacctttacctGagtattttactgaggtaaca	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87707075	87707075	G	C	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.6346	p.E2116Q	0.984	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	56	0	0	44	8	15.38	-	-	-	C	87707075	G	C	87707075	3	2	240	1	0	0	0	0	1	0	0	0	12863	1291	45	2	6500	2	PTPN13	4	87707075	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35169	87707075	103447201	1260	20110										
PTPN13	0	genome.wustl.edu	37	chr4	87724873	87724873	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctattagatcattcctttCtgacaaacgatgagctcgct	6	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	87724873	87724873	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	silent	c.6532	p.L2178	0.976	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	140	0	0	117	33	22	-	-	-	T	87724873	C	T	87724873	2	4	240	1	0	0	0	0	0	0	0	1	12863	912	32	2		2	PTPN13	4	87724873	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17798	87724873	103429403	1261	20111										
HERC5	0	genome.wustl.edu	37	chr4	89410467	89410467	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagtcaatttgagaatgaaGacctgaggaaagagttatgg	12	3	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	89410467	89410467	G	C	SNP	HERC5	ENST00000264350	human	ensembl	69_37n	1	known	missense	c.2113	p.D705H	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646	172	0	0	97	27	21.77	-	-	-	C	89410467	G	C	89410467	3	2	240	1	0	0	0	0	1	0	0	0	7112	942	33	2	2175	2	HERC5	4	89410467	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1685594	89410467	101743809	1262	20112										
MMRN1	0	genome.wustl.edu	37	chr4	90856008	90856008	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgataagagacatagtaagaGaacaatttaaaatttttcaa	6	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	90856008	90856008	G	A	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.1177	p.E393K	0.989	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	12	0	0	16	5	23.81	-	-	-	A	90856008	G	A	90856008	3	1	240	1	0	0	0	0	1	0	0	0	9742	943	33	2	1199	2	MMRN1	4	90856008	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1445541	90856008	100298268	1263	20113										
SMARCAD1	0	genome.wustl.edu	37	chr4	95206186	95206186	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaattaaccaacagaaattGaaactagaacaggatatgac	6	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	95206186	95206186	G	A	SNP	SMARCAD1	ENST00000359052	human	ensembl	69_37n	1	known	silent	c.2991	p.L997	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104	114	0	0	81	10	10.99	-	-	-	A	95206186	G	A	95206186	2	1	240	1	0	0	0	0	0	0	0	1	14861	1281	45	2		2	SMARCAD1	4	95206186	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4350178	95206186	95948090	1264	20114										
BMPR1B	0	genome.wustl.edu	37	chr4	96046217	96046217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcctggagaatccctgaGagacttaattgagcagtctc	9	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	96046217	96046217	G	A	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	missense	c.620	p.R207K	1.000	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	53	0	0	13	24	64.86	-	-	-	A	96046217	G	A	96046217	3	1	240	1	0	0	0	0	1	0	0	0	1475	942	33	2	548	2	BMPR1B	4	96046217	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	840031	96046217	95108059	1265	20115										
RAP1GDS1	0	genome.wustl.edu	37	chr4	99273631	99273631	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtctcttattttcagagttTatgcgaattccatgtgtgga	9	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99273631	99273631	T	C	SNP	RAP1GDS1	ENST00000515187	human	ensembl	69_37n	1	known	missense	c.301	p.Y101H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698	73	0	0	42	13	23.64	-	-	-	C	99273631	T	C	99273631	3	2	240	1	0	0	0	0	1	0	0	0	13122	1751	61	5	257	5	RAP1GDS1	4	99273631	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	3227414	99273631	91880645	1266	20116										
RAP1GDS1	0	genome.wustl.edu	37	chr4	99355171	99355171	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacatgtaataatgcagaatGaagctcttgttgctttggca	9	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99355171	99355171	G	C	SNP	RAP1GDS1	ENST00000339360	human	ensembl	69_37n	1	known	missense	c.1528	p.E510Q	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698	93	0	0	74	22	22.92	-	-	-	C	99355171	G	C	99355171	3	2	240	1	0	0	0	0	1	0	0	0	13122	1291	45	2	1578	2	RAP1GDS1	4	99355171	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81540	99355171	91799105	1267	20117										
METAP1	0	genome.wustl.edu	37	chr4	99956581	99956581	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccagtgccaagttatattCaaagaccagattatgctgat	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99956581	99956581	C	G	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	missense	c.310	p.Q104E	1.000	superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	208	1	0.48	155	46	22.77	-	-	-	G	99956581	C	G	99956581	3	3	240	1	0	0	0	0	1	0	0	0	9557	827	29	2	324	2	METAP1	4	99956581	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	601410	99956581	91197695	1268	20118										
METAP1	0	genome.wustl.edu	37	chr4	99962254	99962254	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccaggtgtaactactgaaGaaatagatcacgctgtacac	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99962254	99962254	G	T	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	nonsense	c.493	p.E165*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	134	0	0	90	26	22.41	-	-	-	T	99962254	G	T	99962254	4	4	240	1	0	0	0	0	0	1	0	0	9557	943	33	2	515	2	METAP1	4	99962254	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5673	99962254	91192022	1269	20119										
METAP1	0	genome.wustl.edu	37	chr4	99964478	99964478	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgttgtacctcagtgaatGaagtcatttgccatggaata	9	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99964478	99964478	G	T	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	nonsense	c.595	p.E199*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	112	0	0	43	54	55.67	-	-	-	T	99964478	G	T	99964478	4	4	240	1	0	0	0	0	0	1	0	0	9557	1291	45	2	621	2	METAP1	4	99964478	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2224	99964478	91189798	1270	20120										
ADH5	0	genome.wustl.edu	37	chr4	99997596	99997596	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgcaaatttatctttattGatgtccacaccaatgatccg	5	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	99997596	99997596	G	A	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	silent	c.672	p.I224	1.000	pfam_ADH_C,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	87	0	0	44	21	32.31	-	-	-	A	99997596	G	A	99997596	2	1	240	1	0	0	0	0	0	0	0	1	311	1280	45	2		2	ADH5	4	99997596	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33118	99997596	91156680	1271	20121										
ADH1C	0	genome.wustl.edu	37	chr4	100257925	100257925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttcaaaacgtcaggacgGtacggatactgcaataggaa	11	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	100257925	100257925	G	A	SNP	ADH1C	ENST00000515683	human	ensembl	69_37n	-1	known	missense	c.1112	p.T371I	0.225	NULL	NULL	-	pseudogene	ADH1C	HGNC	ENSG00000248144	137	0	0	119	34	22.22	-	-	-	A	100257925	G	A	100257925	3	1	240	1	0	0	0	0	1	0	0	0	309	1261	44	4	19	4	ADH1C	4	100257925	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	260329	100257925	90896351	1272	20122										
DAPP1	0	genome.wustl.edu	37	chr4	100738135	100738135	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccctcagatctgtggagcaGatccgatggagaggctgagc	14	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	100738135	100738135	G	C	SNP	DAPP1	ENST00000512369	human	ensembl	69_37n	1	known	missense	c.65	p.R22T	0.044	NULL	pfam_SH2,pfam_Pleckstrin_homology,smart_SH2,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	DAPP1	HGNC	ENSG00000070190	29	0	0	25	17	40.48	-	-	-	C	100738135	G	C	100738135	3	2	240	1	0	0	0	0	1	0	0	0	4271	942	33	2	67	2	DAPP1	4	100738135	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	480210	100738135	90416141	1273	20123										
DAPP1	0	genome.wustl.edu	37	chr4	100756830	100756830	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgaagctcttctcctctCaaatggatgtgacggcagct	10	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	100756830	100756830	C	G	SNP	DAPP1	ENST00000512369	human	ensembl	69_37n	1	known	nonsense	c.152	p.S51*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_Pleckstrin_homology,smart_SH2,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	DAPP1	HGNC	ENSG00000070190	73	0	0	55	19	25.68	-	-	-	G	100756830	C	G	100756830	4	3	240	1	0	0	0	0	0	1	0	0	4271	838	29	2	158	2	DAPP1	4	100756830	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18695	100756830	90397446	1274	20124										
NFKB1	0	genome.wustl.edu	37	chr4	103522112	103522112	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagggatctactagaagtCacatctggtttgatttctga	11	6	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	103522112	103522112	C	G	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	silent	c.1698	p.V566	0.542	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	145	0	0	113	25	18.12	-	-	-	G	103522112	C	G	103522112	2	3	240	1	0	0	0	0	0	0	0	1	10447	813	29	2		2	NFKB1	4	103522112	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2765282	103522112	87632164	1275	20125										
CENPE	0	genome.wustl.edu	37	chr4	104065686	104065686	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggtctcaaattgctccttCaagtgttctatttcacacat	6	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	104065686	104065686	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.4947	p.L1649F	0.139	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	109	0	0	76	22	22.22	-	-	-	G	104065686	C	G	104065686	3	3	240	1	0	0	0	0	1	0	0	0	3259	825	29	2	3226	2	CENPE	4	104065686	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	543574	104065686	87088590	1276	20126										
CENPE	0	genome.wustl.edu	37	chr4	104070123	104070123	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttcttttaggtgaatatGagcaatttttagttcttctt	8	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	104070123	104070123	G	A	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.3721	p.H1241Y	0.794	superfamily_STAT_TF_coiled-coil	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	142	0	0	104	26	20	-	-	-	A	104070123	G	A	104070123	3	1	240	1	0	0	0	0	1	0	0	0	3259	1290	45	2	4472	2	CENPE	4	104070123	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4437	104070123	87084153	1277	20127										
NPNT	0	genome.wustl.edu	37	chr4	106879666	106879666	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgacttgtttgaaatatttGaaatagaaagaggagtcagt	10	2	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	106879666	106879666	G	C	SNP	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	missense	c.1198	p.E400Q	1.000	NULL	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	96	0	0	74	17	18.68	-	-	-	C	106879666	G	C	106879666	3	2	240	1	0	0	0	0	1	0	0	0	10663	1291	45	2	1381	2	NPNT	4	106879666	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2809543	106879666	84274610	1278	20128										
AGXT2L1	0	genome.wustl.edu	37	chr4	109674095	109674095	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaatgattttcttcacttCatctgcataagcactggctg	6	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	109674095	109674095	C	T	SNP	AGXT2L1	ENST00000296486	human	ensembl	69_37n	-1	known	missense	c.574	p.E192K	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L1	HGNC	ENSG00000164089	192	0	0	106	93	46.73	-	-	-	T	109674095	C	T	109674095	3	4	240	1	0	0	0	0	1	0	0	0	406	835	29	2	957	2	AGXT2L1	4	109674095	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2794429	109674095	81480181	1279	20129										
SEC24B	0	genome.wustl.edu	37	chr4	110384067	110384067	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctttttcaggtccagcccaGaatcaaatgcaggttccatc	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	110384067	110384067	G	A	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	silent	c.144	p.Q48	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	36	0	0	30	6	16.67	-	-	-	A	110384067	G	A	110384067	2	1	240	1	0	0	0	0	0	0	0	1	14083	933	33	2		2	SEC24B	4	110384067	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	709972	110384067	80770209	1280	20130										
SEC24B	0	genome.wustl.edu	37	chr4	110415770	110415770	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgtgtttccattttttaGatatgctttcttcatcagca	5	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	110415770	110415770	G	T	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	splice_site	c.1247-1	e6-1	0.998	-	-	-	no_errors	SEC24B	HGNC	ENSG00000138802	106	0	0	74	16	17.78	-	-	-	T	110415770	G	T	110415770	5	4	240	1	0	0	0	0	0	0	1	0	14083	956	33	2	1268	2	SEC24B	4	110415770	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31703	110415770	80738506	1281	20131										
EGF	0	genome.wustl.edu	37	chr4	110866276	110866276	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgaccgtatcttctattCaacatggaaaatgaagacaa	8	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	110866276	110866276	C	G	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	nonsense	c.785	p.S262*	1.000	pirsf_Pro-epidermal_GF	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	118	0	0	96	33	25.58	-	-	-	G	110866276	C	G	110866276	4	3	240	1	0	0	0	0	0	1	0	0	4997	838	29	2	803	2	EGF	4	110866276	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	450506	110866276	80288000	1282	20132										
ELOVL6	0	genome.wustl.edu	37	chr4	110972499	110972499	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcagttccaacactattCagctttcgttgttttcctca	4	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	110972499	110972499	C	T	SNP	ELOVL6	ENST00000394607	human	ensembl	69_37n	-1	known	missense	c.793	p.E265K	0.994	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL6	HGNC	ENSG00000170522	50	0	0	36	14	28	-	-	-	T	110972499	C	T	110972499	3	4	240	1	0	0	0	0	1	0	0	0	5115	835	29	2	8	2	ELOVL6	4	110972499	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106223	110972499	80181777	1283	20133										
ENPEP	0	genome.wustl.edu	37	chr4	111398053	111398053	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcaagtccggaggtgtttCgagtacaaaaagcaggagta	14	6	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	111398053	111398053	C	G	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.483	p.F161L	0.392	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	24	0	0	13	9	40.91	-	-	-	G	111398053	C	G	111398053	3	3	240	1	0	0	0	0	1	0	0	0	5165	883	31	3	485	3	ENPEP	4	111398053	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	425554	111398053	79756223	1284	20134										
TIFA	0	genome.wustl.edu	37	chr4	113199140	113199140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttgcaagagtgatcttgGagataaaataaattgagtct	9	4	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	113199140	113199140	G	A	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	missense	c.433	p.P145S	0.047	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	116	0	0	75	34	31.19	-	-	-	A	113199140	G	A	113199140	3	1	240	1	0	0	0	0	1	0	0	0	15989	1174	41	2	125	2	TIFA	4	113199140	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1801087	113199140	77955136	1285	20135										
C4orf21	0	genome.wustl.edu	37	chr4	113460742	113460742	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagatttctctttttcactCtttttcttctgtttttcttc	2	9	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	113460742	113460742	C	G	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.6276	p.K2092N	0.171	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	199	0	0	163	40	19.7	-	-	-	G	113460742	C	G	113460742	3	3	240	1	0	0	0	0	1	0	0	0	2275	912	32	2	42	2	C4orf21	4	113460742	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	261602	113460742	77693534	1286	20136										
C4orf21	0	genome.wustl.edu	37	chr4	113502847	113502847	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagctgaagatctttccttCcgacttagcttaagataaag	7	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	113502847	113502847	C	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	silent	c.4410	p.R1470	0.999	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	150	0	0	109	23	17.42	-	-	-	T	113502847	C	T	113502847	2	4	240	1	0	0	0	0	0	0	0	1	2275	842	30	2		2	C4orf21	4	113502847	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	42105	113502847	77651429	1287	20137										
C4orf21	0	genome.wustl.edu	37	chr4	113541344	113541344	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctaagtcatctccaggtttCacctgaaagaataaatgtca	6	9	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	113541344	113541344	C	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	silent	c.165	p.V55	1.000	pfam_DUF2439	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	65	0	0	28	37	56.92	-	-	-	T	113541344	C	T	113541344	2	4	240	1	0	0	0	0	0	0	0	1	2275	813	29	2		2	C4orf21	4	113541344	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38497	113541344	77612932	1288	20138										
ANK2	0	genome.wustl.edu	37	chr4	114095592	114095592	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgacagcaatgcaagcttCctccgtgctgccagagcagg	11	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	114095592	114095592	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.105	p.F35	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	75	0	0	43	21	32.81	-	-	-	T	114095592	C	T	114095592	2	4	240	1	0	0	0	0	0	0	0	1	621	854	30	2		2	ANK2	4	114095592	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	554248	114095592	77058684	1289	20139										
ANK2	0	genome.wustl.edu	37	chr4	114264272	114264272	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagtttttttgccttcaaaGaaaatagacttcctctattt	4	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	114264272	114264272	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.4222	p.E1408K	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	190	0	0	108	36	25	-	-	-	A	114264272	G	A	114264272	3	1	240	1	0	0	0	0	1	0	0	0	621	943	33	2	4421	2	ANK2	4	114264272	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	168680	114264272	76890004	1290	20140										
ANK2	0	genome.wustl.edu	37	chr4	114277642	114277642	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaagaagaatcttcttcatCttctgacccagatgctgact	6	11	5	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	114277642	114277642	C	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.7868	p.S2623Y	0.003	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	102	0	0	78	13	14.29	-	-	-	A	114277642	C	A	114277642	3	1	240	1	0	0	0	0	1	0	0	0	621	913	32	2	8083	2	ANK2	4	114277642	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13370	114277642	76876634	1291	20141										
UGT8	0	genome.wustl.edu	37	chr4	115544064	115544064	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttacactccatatttcattCtcctgtggagtgctgttggg	9	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	115544064	115544064	C	G	SNP	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	missense	c.28	p.L10V	0.999	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	82	0	0	62	16	20.51	-	-	-	G	115544064	C	G	115544064	3	3	240	1	0	0	0	0	1	0	0	0	17062	913	32	2	30	2	UGT8	4	115544064	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1266422	115544064	75610212	1292	20142										
UGT8	0	genome.wustl.edu	37	chr4	115544204	115544204	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccatacagtgttcctcctCtctgaaggcagagacatcgc	8	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	115544204	115544204	C	G	SNP	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	silent	c.168	p.L56	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	105	0	0	82	28	25.45	-	-	-	G	115544204	C	G	115544204	2	3	240	1	0	0	0	0	0	0	0	1	17062	900	32	2		2	UGT8	4	115544204	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140	115544204	75610072	1293	20143										
NDST3	0	genome.wustl.edu	37	chr4	118976014	118976014	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatatatttgtgggaaaaGagggaacaagaatgaacacc	11	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	118976014	118976014	G	C	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	missense	c.949	p.E317Q	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	65	0	0	46	16	25.81	-	-	-	C	118976014	G	C	118976014	3	2	240	1	0	0	0	0	1	0	0	0	10329	943	33	2	951	2	NDST3	4	118976014	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3431810	118976014	72178262	1294	20144										
METTL14	0	genome.wustl.edu	37	chr4	119618419	119618419	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttctggaaccccctttaGaagaatattacagagaaact	6	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	119618419	119618419	G	A	SNP	METTL14	ENST00000388822	human	ensembl	69_37n	1	known	missense	c.586	p.E196K	1.000	pfam_MT-A70-like,pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388	105	0	0	73	27	27	-	-	-	A	119618419	G	A	119618419	3	1	240	1	0	0	0	0	1	0	0	0	9569	943	33	2	612	2	METTL14	4	119618419	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	642405	119618419	71535857	1295	20145										
PDE5A	0	genome.wustl.edu	37	chr4	120528133	120528133	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccaaatgactagaaatatCcttcactaattccaagagtc	4	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	120528133	120528133	C	A	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	missense	c.472	p.D158Y	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	75	0	0	49	20	28.99	-	-	-	A	120528133	C	A	120528133	3	1	240	1	0	0	0	0	1	0	0	0	11717	855	30	2	2235	2	PDE5A	4	120528133	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	909714	120528133	70626143	1296	20146										
MAD2L1	0	genome.wustl.edu	37	chr4	120986839	120986839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaaatacctttcagttgttCcaccacattatttaggtatt	4	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	120986839	120986839	C	T	SNP	MAD2L1	ENST00000296509	human	ensembl	69_37n	-1	known	missense	c.208	p.E70K	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109	94	0	0	41	15	26.79	-	-	-	T	120986839	C	T	120986839	3	4	240	1	0	0	0	0	1	0	0	0	9215	864	30	2	425	2	MAD2L1	4	120986839	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	458706	120986839	70167437	1297	20147										
TNIP3	0	genome.wustl.edu	37	chr4	122063919	122063919	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtttttctttctccatctGacaagcttttatctaaagac	4	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	122063919	122063919	G	A	SNP	TNIP3	ENST00000057513	human	ensembl	69_37n	-1	known	nonsense	c.748	p.Q250*	1.000	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	158	0	0	132	23	14.84	-	-	-	A	122063919	G	A	122063919	4	1	240	1	0	0	0	0	0	1	0	0	16411	1299	45	2	245	2	TNIP3	4	122063919	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1077080	122063919	69090357	1298	20148										
EXOSC9	0	genome.wustl.edu	37	chr4	122722634	122722634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcctactccgtgccatcGaagagaagaaggtatggttt	11	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	122722634	122722634	G	A	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	missense	c.55	p.E19K	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	35	0	0	28	7	20	-	-	-	A	122722634	G	A	122722634	3	1	240	1	0	0	0	0	1	0	0	0	5358	1059	37	1	57	1	EXOSC9	4	122722634	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	658715	122722634	68431642	1299	20149										
BBS7	0	genome.wustl.edu	37	chr4	122780242	122780242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcacatcattgattttatCcccagaaaggtaataatgtt	6	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	122780242	122780242	C	G	SNP	BBS7	ENST00000264499	human	ensembl	69_37n	-1	known	missense	c.433	p.D145H	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686	59	0	0	52	13	20	-	-	-	G	122780242	C	G	122780242	3	3	240	1	0	0	0	0	1	0	0	0	1345	855	30	2	1779	2	BBS7	4	122780242	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	57608	122780242	68374034	1300	20150										
KIAA1109	0	genome.wustl.edu	37	chr4	123097031	123097031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatggattcatcatttttcGgtggtggaaaatgtataacc	10	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	123097031	123097031	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.320	p.R107Q	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	176	0	0	130	21	13.91	-	-	-	A	123097031	G	A	123097031	3	1	240	1	0	0	0	0	1	0	0	0	8260	1116	39	1	334	1	KIAA1109	4	123097031	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	316789	123097031	68057245	1301	20151										
KIAA1109	0	genome.wustl.edu	37	chr4	123175386	123175386	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatgatttgaaaaaagatCtacctctgatgcctcctcct	6	11	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	123175386	123175386	C	G	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.5959	p.L1987V	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	91	0	0	73	21	22.34	-	-	-	G	123175386	C	G	123175386	3	3	240	1	0	0	0	0	1	0	0	0	8260	912	32	2	6101	2	KIAA1109	4	123175386	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78355	123175386	67978890	1302	20152										
KIAA1109	0	genome.wustl.edu	37	chr4	123185514	123185514	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attctcagcatagcaccagtCaggatgatgtggcaggtgta	12	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	123185514	123185514	C	A	SNP	KIAA1109	ENST00000419325	human	ensembl	69_37n	1	putative	nonsense	c.1121	p.S374*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1109	HGNC	ENSG00000138688	105	0	0	86	24	21.82	-	-	-	A	123185514	C	A	123185514	4	1	240	1	0	0	0	0	0	1	0	0	8260	827	29	2	7419	2	KIAA1109	4	123185514	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10128	123185514	67968762	1303	20153										
SPRY1	0	genome.wustl.edu	37	chr4	124323256	124323256	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgacttgaagggttccttGaaagaggacctgacacagca	12	8	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	124323256	124323256	G	C	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	missense	c.510	p.L170F	0.997	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	50	0	0	81	25	23.58	-	-	-	C	124323256	G	C	124323256	3	2	240	1	0	0	0	0	1	0	0	0	15196	1281	45	2	512	2	SPRY1	4	124323256	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1137742	124323256	66831020	1304	20154										
FAT4	0	genome.wustl.edu	37	chr4	126369917	126369917	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcctgaaaaccaaccagtCagctctcttgtcaccaccat	4	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	126369917	126369917	C	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.7746	p.V2582	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	55	0	0	41	13	24.07	-	-	-	G	126369917	C	G	126369917	2	3	240	1	0	0	0	0	0	0	0	1	5738	813	29	2		2	FAT4	4	126369917	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2046661	126369917	64784359	1305	20155										
FAT4	0	genome.wustl.edu	37	chr4	126411444	126411444	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcctgcggggcatgtctgTgttctgagtcagggccctga	15	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	126411444	126411444	T	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.13467	p.C4489	0.987	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	51	0	0	46	17	26.98	-	-	-	C	126411444	T	C	126411444	2	2	240	1	0	0	0	0	0	0	0	1	5738	1702	59	5		5	FAT4	4	126411444	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	41527	126411444	64742832	1306	20156										
PLK4	0	genome.wustl.edu	37	chr4	128807454	128807454	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtagtttatttgacaaaaGaagacttttgattggtcagc	10	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	128807454	128807454	G	C	SNP	PLK4	ENST00000270861	human	ensembl	69_37n	1	known	missense	c.929	p.R310T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	43	0	0	33	13	28.26	-	-	-	C	128807454	G	C	128807454	3	2	240	1	0	0	0	0	1	0	0	0	12172	942	33	2	947	2	PLK4	4	128807454	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2396010	128807454	62346822	1307	20157										
LARP1B	0	genome.wustl.edu	37	chr4	129019458	129019458	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcagcgtgttcaggctctCactacaaaccttaatctcat	5	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	129019458	129019458	C	G	SNP	LARP1B	ENST00000507377	human	ensembl	69_37n	1	known	missense	c.691	p.H231D	0.989	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LARP1B	HGNC	ENSG00000138709	63	0	0	64	11	14.67	-	-	-	G	129019458	C	G	129019458	3	3	240	1	0	0	0	0	1	0	0	0	8683	813	29	2	808	2	LARP1B	4	129019458	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	212004	129019458	62134818	1308	20158										
SCLT1	0	genome.wustl.edu	37	chr4	129891610	129891610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctacagcaactctcagctCtaatttggcttgcctaaaaa	6	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	129891610	129891610	C	G	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.700	p.E234Q	0.999	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	118	0	0	109	21	16.15	-	-	-	G	129891610	C	G	129891610	3	3	240	1	0	0	0	0	1	0	0	0	13994	922	32	2	1414	2	SCLT1	4	129891610	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	872152	129891610	61262666	1309	20159										
PCDH18	0	genome.wustl.edu	37	chr4	138442192	138442192	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctaaaatctcctagctctgGcggacatcttgaagcagttt	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	138442192	138442192	G	C	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	silent	c.3399	p.R1133	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	38	0	0	32	5	13.51	-	-	-	C	138442192	G	C	138442192	2	2	240	1	0	0	0	0	0	0	0	1	11586	1190	42	4		4	PCDH18	4	138442192	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8550582	138442192	52712084	1310	20160										
PCDH18	0	genome.wustl.edu	37	chr4	138452321	138452321	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataatccacttgcttgaaaaGagtcaaatgtcctctttcag	6	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	138452321	138452321	G	C	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.922	p.L308V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	23	0	0	26	5	16.13	-	-	-	C	138452321	G	C	138452321	3	2	240	1	0	0	0	0	1	0	0	0	11586	942	33	2	2501	2	PCDH18	4	138452321	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10129	138452321	52701955	1311	20161										
ELF2	0	genome.wustl.edu	37	chr4	139980485	139980485	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaatgcttcctgatccagtCagatttgactttgtctgcag	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	139980485	139980485	C	G	SNP	ELF2	ENST00000379550	human	ensembl	69_37n	-1	known	silent	c.1434	p.L478	0.957	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF2	HGNC	ENSG00000109381	93	0	0	83	21	20.19	-	-	-	G	139980485	C	G	139980485	2	3	240	1	0	0	0	0	0	0	0	1	5091	813	29	2		2	ELF2	4	139980485	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1528164	139980485	51173791	1312	20162										
MAML3	0	genome.wustl.edu	37	chr4	140640941	140640941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaagagggtagctggcgcCattgttgaatggtcccaatt	13	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	140640941	140640941	C	T	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.2953	p.G985S	0.646	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	23	0	0	30	9	23.08	-	-	-	T	140640941	C	T	140640941	3	4	240	1	0	0	0	0	1	0	0	0	9278	594	21	4	467	4	MAML3	4	140640941	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	660456	140640941	50513335	1313	20163										
SCOC	0	genome.wustl.edu	37	chr4	141302167	141302167	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaaatctgaagctaaaatCagaaaaccaagttcttggac	7	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	141302167	141302167	C	T	SNP	SCOC	ENST00000394201	human	ensembl	69_37n	1	known	missense	c.389	p.S130L	1.000	pfam_DUF2205_coiled-coil	pfam_DUF2205_coiled-coil	-	no_errors	SCOC	HGNC	ENSG00000153130	57	0	0	28	8	22.22	-	-	-	T	141302167	C	T	141302167	3	4	240	1	0	0	0	0	1	0	0	0	14021	838	29	2	477	2	SCOC	4	141302167	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	661226	141302167	49852109	1314	20164										
IL15	0	genome.wustl.edu	37	chr4	142653952	142653952	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaaaaaatattaaagaatTtttgcagagttttgtacata	7	2	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	142653952	142653952	T	A	SNP	IL15	ENST00000296545	human	ensembl	69_37n	1	known	missense	c.440	p.F147Y	1.000	pfam_Interleukin_15-like,prints_Interleukin-15	pfam_Interleukin_15-like,prints_Interleukin-15_mammal,prints_Interleukin-15	-	no_errors	IL15	HGNC	ENSG00000164136	107	0	0	50	16	24.24	-	-	-	A	142653952	T	A	142653952	3	1	240	1	0	0	0	0	1	0	0	0	7685	1841	64	5	462	5	IL15	4	142653952	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1351785	142653952	48500324	1315	20165										
SMARCA5	0	genome.wustl.edu	37	chr4	144465014	144465014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgttctctagactgcagaGatgaatgaaaagctctccaa	8	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	144465014	144465014	G	A	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	silent	c.2061	p.E687	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	93	0	0	53	15	22.06	-	-	-	A	144465014	G	A	144465014	2	1	240	1	0	0	0	0	0	0	0	1	14860	933	33	2		2	SMARCA5	4	144465014	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1811062	144465014	46689262	1316	20166										
ABCE1	0	genome.wustl.edu	37	chr4	146048720	146048720	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaactactttttcttggatGattagactgactctgagaat	8	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	146048720	146048720	G	T	SNP	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	missense	c.1795	p.D599Y	1.000	NULL	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	161	0	0	83	21	20.19	-	-	-	T	146048720	G	T	146048720	3	4	240	1	0	0	0	0	1	0	0	0	64	1290	45	2	1861	2	ABCE1	4	146048720	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1583706	146048720	45105556	1317	20167										
ZNF827	0	genome.wustl.edu	37	chr4	146823477	146823477	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgggggcggtagagggtcctCaggcagcagcgatgatttct	17	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	146823477	146823477	C	A	SNP	ZNF827	ENST00000508784	human	ensembl	69_37n	-1	known	nonsense	c.934	p.E312*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612	101	1	0.98	82	30	26.79	-	-	-	A	146823477	C	A	146823477	4	1	240	1	0	0	0	0	0	1	0	0	18273	835	29	2	2347	2	ZNF827	4	146823477	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	774757	146823477	44330799	1318	20168										
SLC10A7	0	genome.wustl.edu	37	chr4	147431098	147431098	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcgttgatgggtgtgattGataaaagctgaagaaaaagc	12	3	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	147431098	147431098	G	C	SNP	SLC10A7	ENST00000394062	human	ensembl	69_37n	-1	known	nonsense	c.287	p.S96*	1.000	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	-	no_errors	SLC10A7	HGNC	ENSG00000120519	57	0	0	50	18	26.47	-	-	-	C	147431098	G	C	147431098	4	2	240	1	0	0	0	0	0	1	0	0	14468	1294	45	2	820	2	SLC10A7	4	147431098	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	607621	147431098	43723178	1319	20169										
TTC29	0	genome.wustl.edu	37	chr4	147724638	147724638	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcaggttcaatgttacctCtgctctccttccatgacagc	7	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	147724638	147724638	C	T	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	missense	c.1379	p.R460K	0.998	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	83	0	0	94	25	21.01	-	-	-	T	147724638	C	T	147724638	3	4	240	1	0	0	0	0	1	0	0	0	16793	913	32	2	138	2	TTC29	4	147724638	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	293540	147724638	43429638	1320	20170										
DCLK2	0	genome.wustl.edu	37	chr4	151000411	151000411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagaaggcgcgcttctacCggaacggggaccgctacttc	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	151000411	151000411	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	missense	c.232	p.R78W	1.000	superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	29	0	0	30	8	21.05	-	-	-	T	151000411	C	T	151000411	3	4	240	1	0	0	0	0	1	0	0	0	4323	643	23	1	234	1	DCLK2	4	151000411	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3275773	151000411	40153865	1321	20171										
DCLK2	0	genome.wustl.edu	37	chr4	151169478	151169478	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattaatcagtcaaatgcttCaggtaaatgttgaagctcgg	9	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	151169478	151169478	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	nonsense	c.1948	p.Q650*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	107	0	0	74	21	22.11	-	-	-	T	151169478	C	T	151169478	4	4	240	1	0	0	0	0	0	1	0	0	4323	827	29	2	1951	2	DCLK2	4	151169478	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	169067	151169478	39984798	1322	20172										
LRBA	0	genome.wustl.edu	37	chr4	151749368	151749368	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgcacgggttgttccacaGatagatcaccaagggctcca	10	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	151749368	151749368	G	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.5135	p.S1712Y	0.996	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	62	0	0	44	13	22.81	-	-	-	T	151749368	G	T	151749368	3	4	240	1	0	0	0	0	1	0	0	0	8997	942	33	2	3572	2	LRBA	4	151749368	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	579890	151749368	39404908	1323	20173										
LRBA	0	genome.wustl.edu	37	chr4	151773039	151773039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaatatataaaatcacctCaagcacatgtcgatgaggtt	7	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	151773039	151773039	C	G	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.3823	p.E1275Q	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	59	0	0	43	17	28.33	-	-	-	G	151773039	C	G	151773039	3	3	240	1	0	0	0	0	1	0	0	0	8997	835	29	2	4912	2	LRBA	4	151773039	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23671	151773039	39381237	1324	20174										
KIAA0922	0	genome.wustl.edu	37	chr4	154542961	154542961	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggtttgtaaagcagatgcCgaaattgcaagcagtttacc	11	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	154542961	154542961	C	G	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	silent	c.3819	p.A1273	0.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	122	0	0	95	23	19.33	-	-	-	G	154542961	C	G	154542961	2	3	240	1	0	0	0	0	0	0	0	1	8253	639	23	3		3	KIAA0922	4	154542961	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2769922	154542961	36611315	1325	20175										
DCHS2	0	genome.wustl.edu	37	chr4	155241942	155241942	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcaaaaaactgccgtcatCatctttggcattgaagacat	7	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	155241942	155241942	C	G	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3244	p.D1082H	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	210	0	0	136	55	28.65	-	-	-	G	155241942	C	G	155241942	3	3	240	1	0	0	0	0	1	0	0	0	4319	826	29	2	5554	2	DCHS2	4	155241942	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	698981	155241942	35912334	1326	20176										
GRIA2	0	genome.wustl.edu	37	chr4	158224870	158224870	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcagatgagacccgacctCaaaggagctctccttagctt	8	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	158224870	158224870	C	G	SNP	GRIA2	ENST00000264426	human	ensembl	69_37n	1	known	silent	c.396	p.L132	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	77	0	0	62	22	26.19	-	-	-	G	158224870	C	G	158224870	2	3	240	1	0	0	0	0	0	0	0	1	6819	813	29	2		2	GRIA2	4	158224870	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2982928	158224870	32929406	1327	20177										
ETFDH	0	genome.wustl.edu	37	chr4	159603495	159603495	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagtggagaaagctgcccaGataggagctcatactctctc	10	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	159603495	159603495	G	A	SNP	ETFDH	ENST00000511912	human	ensembl	69_37n	1	known	silent	c.324	p.Q108	1.000	pfam_FAD_bind_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_ETFD_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	ETFDH	HGNC	ENSG00000171503	89	0	0	67	18	21.18	-	-	-	A	159603495	G	A	159603495	2	1	240	1	0	0	0	0	0	0	0	1	5308	933	33	2		2	ETFDH	4	159603495	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1378625	159603495	31550781	1328	20178										
PPID	0	genome.wustl.edu	37	chr4	159631981	159631981	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtacaatgctttggtatttGatgggtctagttcaagagcc	12	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	159631981	159631981	G	C	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	nonsense	c.914	p.S305*	0.992	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	192	0	0	78	90	53.25	-	-	-	C	159631981	G	C	159631981	4	2	240	1	0	0	0	0	0	1	0	0	12398	1294	45	2	210	2	PPID	4	159631981	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	28486	159631981	31522295	1329	20179										
FNIP2	0	genome.wustl.edu	37	chr4	159756598	159756598	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccaagcagaggacagaatGaagacagggacagtggcatt							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	159756598	159756598	G	-	DEL	FNIP2	ENST00000379346	human	ensembl	69_37n	1	known	frame_shift_del	c.766	p.E256fs	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795	143	0	0	95	23	18.85	-	-	-	-	159756598	G	-	159756598	7	5	240	1	0	1	0	1	0	0	0	0	6022	1291	45	0	723	0	FNIP2	4	159756598	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	124617	159756598	31397678	1330	20180										
RAPGEF2	0	genome.wustl.edu	37	chr4	160252648	160252648	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgaaggagatcctgcaatGactcgatttttagaagaatt	9	5	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	160252648	160252648	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	missense	c.1050	p.M350I	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	66	0	0	27	4	12.9	-	-	-	A	160252648	G	A	160252648	3	1	240	1	0	0	0	0	1	0	0	0	13127	1290	45	2	1080	2	RAPGEF2	4	160252648	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	496050	160252648	30901628	1331	20181										
NPY1R	0	genome.wustl.edu	37	chr4	164247622	164247622	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatgacaatcatcattttCaaaagccagaagctgggcat	8	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	164247622	164247622	C	T	SNP	NPY1R	ENST00000296533	human	ensembl	69_37n	-1	known	missense	c.85	p.E29K	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	98	0	0	65	19	22.62	-	-	-	T	164247622	C	T	164247622	3	4	240	1	0	0	0	0	1	0	0	0	10681	835	29	2	1077	2	NPY1R	4	164247622	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3994974	164247622	26906654	1332	20182										
TLL1	0	genome.wustl.edu	37	chr4	167020662	167020662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacagctgtggggcttggtCgattctgtggatccggggta	16	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	167020662	167020662	C	G	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	missense	c.2890	p.R964G	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	154	0	0	107	46	30.07	-	-	-	G	167020662	C	G	167020662	3	3	240	1	0	0	0	0	1	0	0	0	16040	876	31	3	2968	3	TLL1	4	167020662	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2773040	167020662	24133614	1333	20183										
PALLD	0	genome.wustl.edu	37	chr4	169433221	169433221	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttaaagccgcaaagccaaGaaacagaagcccaaatgggg	10	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	169433221	169433221	G	C	SNP	PALLD	ENST00000261509	human	ensembl	69_37n	1	known	missense	c.566	p.R189T	0.900	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	60	0	0	58	10	14.71	-	-	-	C	169433221	G	C	169433221	3	2	240	1	0	0	0	0	1	0	0	0	11480	942	33	2	568	2	PALLD	4	169433221	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2412559	169433221	21721055	1334	20184										
PALLD	0	genome.wustl.edu	37	chr4	169847519	169847519	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgaatactgccttggtaGaaagtgaggacctgtaatcc	10	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	169847519	169847519	G	C	SNP	PALLD	ENST00000335742	human	ensembl	69_37n	1	known	missense	c.2989	p.E997Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	44	0	0	37	19	33.93	-	-	-	C	169847519	G	C	169847519	3	2	240	1	0	0	0	0	1	0	0	0	11480	943	33	2	4117	2	PALLD	4	169847519	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	414298	169847519	21306757	1335	20185										
HAND2	0	genome.wustl.edu	37	chr4	174449933	174449933	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgtcggtcttcttgatctCtgccttgaaggcctccgcct	9	15	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	174449933	174449933	C	T	SNP	HAND2	ENST00000359562	human	ensembl	69_37n	-1	known	missense	c.508	p.E170K	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	HAND2	HGNC	ENSG00000164107	153	0	0	94	31	24.8	-	-	-	T	174449933	C	T	174449933	3	4	240	1	0	0	0	0	1	0	0	0	7001	922	32	2	153	2	HAND2	4	174449933	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4602414	174449933	16704343	1336	20186										
ADAM29	0	genome.wustl.edu	37	chr4	175896721	175896721	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccttggggtgtttctgtcCtgttctggacacatccagga	12	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	175896721	175896721	C	A	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	silent	c.45	p.S15	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	88	0	0	48	18	27.27	-	-	-	A	175896721	C	A	175896721	2	1	240	1	0	0	0	0	0	0	0	1	247	668	24	4		4	ADAM29	4	175896721	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1446788	175896721	15257555	1337	20187										
ODZ3	0	genome.wustl.edu	37	chr4	183651370	183651370	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagccttgcatctgtcatcaGaggccaagtactgactgctg	10	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	183651370	183651370	G	C	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.2603	p.R868T	1.000	superfamily_CarboxyPept-like_regulatory	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	88	0	0	48	21	30.43	-	-	-	C	183651370	G	C	183651370	3	2	240	1	0	0	0	0	1	0	0	0	10909	942	33	2	2657	2	ODZ3	4	183651370	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7754649	183651370	7502906	1338	20188										
ODZ3	0	genome.wustl.edu	37	chr4	183658121	183658121	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatggtagctgtagtaggaaGactcttccaaaagtggtttc	11	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	183658121	183658121	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.3128	p.R1043K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	95	0	0	69	22	24.18	-	-	-	A	183658121	G	A	183658121	3	1	240	1	0	0	0	0	1	0	0	0	10909	942	33	2	3190	2	ODZ3	4	183658121	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6751	183658121	7496155	1339	20189										
WWC2	0	genome.wustl.edu	37	chr4	184182396	184182396	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccactggctgaggccccGaagtctgtggcctccctgtc	11	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	184182396	184182396	G	A	SNP	WWC2	ENST00000448232	human	ensembl	69_37n	1	known	silent	c.1620	p.P540	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC2	HGNC	ENSG00000151718	96	0	0	59	23	28.05	-	-	-	A	184182396	G	A	184182396	2	1	240	1	0	0	0	0	0	0	0	1	17509	1045	37	1		1	WWC2	4	184182396	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	524275	184182396	6971880	1340	20190										
CCDC111	0	genome.wustl.edu	37	chr4	185593377	185593377	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttgacttgcttggcagtGaagatgatgatagcgctcca	11	9	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	185593377	185593377	G	A	SNP	CCDC111	ENST00000314970	human	ensembl	69_37n	1	known	missense	c.607	p.E203K	0.001	pfam_DNA_primase_S	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	CCDC111	HGNC	ENSG00000164306	94	0	0	64	14	17.95	-	-	-	A	185593377	G	A	185593377	3	1	240	1	0	0	0	0	1	0	0	0	2773	1291	45	2	625	2	CCDC111	4	185593377	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1410981	185593377	5560899	1341	20191										
SLC25A4	0	genome.wustl.edu	37	chr4	186065972	186065972	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtacaaagggatcattGattgtgtggtgagaatccct	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	186065972	186065972	G	C	SNP	SLC25A4	ENST00000281456	human	ensembl	69_37n	1	known	missense	c.166	p.D56H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729	56	0	0	39	10	20.41	-	-	-	C	186065972	G	C	186065972	3	2	240	1	0	0	0	0	1	0	0	0	14593	1290	45	2	172	2	SLC25A4	4	186065972	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	472595	186065972	5088304	1342	20192										
KIAA1430	0	genome.wustl.edu	37	chr4	186096982	186096982	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgttccttctgtctgttGagagcactgtgatataactt	9	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	186096982	186096982	G	A	SNP	KIAA1430	ENST00000296775	human	ensembl	69_37n	-1	known	silent	c.1278	p.L426	1.000	NULL	NULL	-	no_errors	KIAA1430	HGNC	ENSG00000164323	215	0	0	126	44	25.73	-	-	-	A	186096982	G	A	186096982	2	1	240	1	0	0	0	0	0	0	0	1	8284	1277	45	2		2	KIAA1430	4	186096982	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31010	186096982	5057294	1343	20193										
LRP2BP	0	genome.wustl.edu	37	chr4	186291807	186291807	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttactttagaataatagTgtttagcggttgtttcatcc	8	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	186291807	186291807	T	A	SNP	LRP2BP	ENST00000362004	human	ensembl	69_37n	-1	known	missense	c.971	p.H324L	0.018	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771	161	0	0	100	31	23.66	-	-	-	A	186291807	T	A	186291807	3	1	240	1	0	0	0	0	1	0	0	0	9023	1696	59	5	86	5	LRP2BP	4	186291807	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	194825	186291807	4862469	1344	20194										
TLR3	0	genome.wustl.edu	37	chr4	187003492	187003492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttttctccagggtgttttCacgcaattggaagattattt	9	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187003492	187003492	C	T	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.652	p.H218Y	0.347	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	35	0	0	30	11	26.83	-	-	-	T	187003492	C	T	187003492	3	4	240	1	0	0	0	0	1	0	0	0	16047	826	29	2	662	2	TLR3	4	187003492	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	711685	187003492	4150784	1345	20195										
TLR3	0	genome.wustl.edu	37	chr4	187004563	187004563	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttggagtccaacggctttGacgagatcccagttgaggtc	12	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187004563	187004563	G	C	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.1723	p.D575H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	76	0	0	59	13	18.06	-	-	-	C	187004563	G	C	187004563	3	2	240	1	0	0	0	0	1	0	0	0	16047	1290	45	2	1733	2	TLR3	4	187004563	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1071	187004563	4149713	1346	20196										
FAM149A	0	genome.wustl.edu	37	chr4	187086585	187086585	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcacggagaccagggggcaGaatacagcagttcctggatg	15	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187086585	187086585	G	C	SNP	FAM149A	ENST00000356371	human	ensembl	69_37n	1	known	missense	c.2004	p.Q668H	0.121	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794	83	0	0	60	25	29.41	-	-	-	C	187086585	G	C	187086585	3	2	240	1	0	0	0	0	1	0	0	0	5495	933	33	2	1161	2	FAM149A	4	187086585	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82022	187086585	4067691	1347	20197										
KLKB1	0	genome.wustl.edu	37	chr4	187159467	187159467	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaccgctataaaggtgctGagtaacgtggaatctggatt	11	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187159467	187159467	G	T	SNP	KLKB1	ENST00000511608	human	ensembl	69_37n	1	putative	nonstop	c.689	p.*230L	0.005	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Cyt_P450,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Cyt_P450,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KLKB1	HGNC	ENSG00000164344	80	0	0	61	14	18.67	-	-	-	T	187159467	G	T	187159467	4	4	240	1	0	0	0	0	0	0	0	0	8465	1277	45	2	564	2	KLKB1	4	187159467	Nonstop_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	72882	187159467	3994809	1348	20198										
FAT1	0	genome.wustl.edu	37	chr4	187541561	187541561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgacaacgtgggccactgcaGaaggcttatgttcctctgtc	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187541561	187541561	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6179	p.S2060F	0.915	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	86	0	0	47	18	27.69	-	-	-	A	187541561	G	A	187541561	3	1	240	1	0	0	0	0	1	0	0	0	5735	942	33	2	7659	2	FAT1	4	187541561	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	382094	187541561	3612715	1349	20199										
FAT1	0	genome.wustl.edu	37	chr4	187629725	187629725	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actggttctaaaatagaaatGagaccagtgttgtaatttaa	8	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	4	187629725	187629725	G	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	silent	c.1257	p.L419	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	64	0	0	44	13	18.31	-	-	-	C	187629725	G	C	187629725	2	2	240	1	0	0	0	0	0	0	0	1	5735	1277	45	2		2	FAT1	4	187629725	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	88164	187629725	3524551	1350	20200										
PLEKHG4B	0	genome.wustl.edu	37	chr5	173086	173086	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcgggaggaagaagtatctGaggcatgtgttcctctttga	14	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	173086	173086	G	C	SNP	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	silent	c.3057	p.L1019	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	73	0	0	79	19	19.39	-	-	-	C	173086	G	C	173086	2	2	240	1	0	0	0	0	0	0	0	1	12146	1277	45	2		2	PLEKHG4B	5	173086	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		173086	180742174	1351	20201										
SLC9A3	0	genome.wustl.edu	37	chr5	475774	475774	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggggggctcctcggtgtctGaaagttccaagtctggggaa	16	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	475774	475774	G	A	SNP	SLC9A3	ENST00000264938	human	ensembl	69_37n	-1	known	missense	c.2153	p.S718L	0.995	NULL	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_bac,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230	40	0	0	17	13	43.33	-	-	-	A	475774	G	A	475774	3	1	240	1	0	0	0	0	1	0	0	0	14802	1294	45	2	363	2	SLC9A3	5	475774	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	302688	475774	180439486	1352	20202										
BRD9	0	genome.wustl.edu	37	chr5	891869	891869	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtctgacctgtcatcataGtaactggagtcgtggccgga	13	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	891869	891869	G	A	SNP	BRD9	ENST00000467963	human	ensembl	69_37n	-1	known	silent	c.153	p.Y51	1.000	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310	104	0	0	83	23	21.7	-	-	-	A	891869	G	A	891869	2	1	240	1	0	0	0	0	0	0	0	1	1515	1024	36	4		4	BRD9	5	891869	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	416095	891869	180023391	1353	20203										
NKD2	0	genome.wustl.edu	37	chr5	1034419	1034419	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttcacgctctatgactttGacaactgcgggaaggtcacc	10	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	1034419	1034419	G	C	SNP	NKD2	ENST00000296849	human	ensembl	69_37n	1	known	missense	c.400	p.D134H	1.000	pfscan_EF_HAND_2	pfscan_EF_HAND_2	-	no_errors	NKD2	HGNC	ENSG00000145506	65	0	0	70	10	12.5	-	-	-	C	1034419	G	C	1034419	3	2	240	1	0	0	0	0	1	0	0	0	10514	1290	45	2	422	2	NKD2	5	1034419	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	142550	1034419	179880841	1354	20204										
SLC6A3	0	genome.wustl.edu	37	chr5	1416257	1416257	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtagctggagaaggcgatCagcaccccgaaccccacgcc	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	1416257	1416257	C	A	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	silent	c.987	p.L329	0.654	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	56	0	0	69	13	15.85	-	-	-	A	1416257	C	A	1416257	2	1	240	1	0	0	0	0	0	0	0	1	14774	813	29	2		2	SLC6A3	5	1416257	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	381838	1416257	179499003	1355	20205										
LPCAT1	0	genome.wustl.edu	37	chr5	1479769	1479769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggttgtgaaactgacacagCgtgagccacaggatttccag	12	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	1479769	1479769	C	T	SNP	LPCAT1	ENST00000283415	human	ensembl	69_37n	-1	known	silent	c.783	p.T261	0.195	NULL	pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	LPCAT1	HGNC	ENSG00000153395	78	0	0	87	28	24.35	-	-	-	T	1479769	C	T	1479769	2	4	240	1	0	0	0	0	0	0	0	1	8976	755	27	1		1	LPCAT1	5	1479769	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63512	1479769	179435491	1356	20206										
KIAA0947	0	genome.wustl.edu	37	chr5	5461007	5461007	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgccagccctgcacaagaGaaggaagctgcccctgggaa	12	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	5461007	5461007	G	C	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.1560	p.E520D	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	74	0	0	55	23	29.49	-	-	-	C	5461007	G	C	5461007	3	2	240	1	0	0	0	0	1	0	0	0	8254	933	33	2	1610	2	KIAA0947	5	5461007	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3981238	5461007	175454253	1357	20207										
KIAA0947	0	genome.wustl.edu	37	chr5	5463630	5463630	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgaggccgaaacaacatttCagtgtcagatagcaacagtg	11	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	5463630	5463630	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	nonsense	c.4183	p.Q1395*	0.001	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	23	0	0	23	5	17.86	-	-	-	T	5463630	C	T	5463630	4	4	240	1	0	0	0	0	0	1	0	0	8254	827	29	2	4233	2	KIAA0947	5	5463630	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2623	5463630	175451630	1358	20208										
KIAA0947	0	genome.wustl.edu	37	chr5	5466495	5466495	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctctcagaactaaaaattCagaagatatctatggaccac	5	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	5466495	5466495	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	nonsense	c.5941	p.Q1981*	0.982	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	108	0	0	83	23	21.7	-	-	-	T	5466495	C	T	5466495	4	4	240	1	0	0	0	0	0	1	0	0	8254	827	29	2	5995	2	KIAA0947	5	5466495	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2865	5466495	175448765	1359	20209										
KIAA0947	0	genome.wustl.edu	37	chr5	5473835	5473835	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgctgccatcagaaatgGatctggacgcatgataacat	9	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	5473835	5473835	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	nonsense	c.6387	p.W2129*	1.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	58	0	0	47	14	22.95	-	-	-	A	5473835	G	A	5473835	4	1	240	1	0	0	0	0	0	1	0	0	8254	1183	41	2	6449	2	KIAA0947	5	5473835	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7340	5473835	175441425	1360	20210										
SRD5A1	0	genome.wustl.edu	37	chr5	6652121	6652121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatccccgttttctaataGgtgagtgtccacagcagtga	10	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	6652121	6652121	G	C	SNP	SRD5A1	ENST00000274192	human	ensembl	69_37n	1	known	missense	c.460	p.G154R	1.000	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545	118	0	0	84	23	21.5	-	-	-	C	6652121	G	C	6652121	3	2	240	1	0	0	0	0	1	0	0	0	15229	1014	35	4	466	4	SRD5A1	5	6652121	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1178286	6652121	174263139	1361	20211										
CDH12	0	genome.wustl.edu	37	chr5	21817060	21817060	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttgtctatatacctttttCaatttgatgactccctcttg	4	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	21817060	21817060	C	G	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.996	p.L332F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	118	0	0	94	22	18.97	-	-	-	G	21817060	C	G	21817060	3	3	240	1	0	0	0	0	1	0	0	0	3127	825	29	2	1416	2	CDH12	5	21817060	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15164939	21817060	159098200	1362	20212										
PRDM9	0	genome.wustl.edu	37	chr5	23527069	23527069	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccggcagtcagtcctcctCactcaccagaggagacacac	9	16	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	23527069	23527069	C	T	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	silent	c.1872	p.L624	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	66	0	0	31	10	23.81	-	-	-	T	23527069	C	T	23527069	2	4	240	1	0	0	0	0	0	0	0	1	12544	813	29	2		2	PRDM9	5	23527069	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1710009	23527069	157388191	1363	20213										
PRDM9	0	genome.wustl.edu	37	chr5	23527741	23527741	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcaataagtcacacctcctCagacaccagaggacacacac	6	16	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	23527741	23527741	C	T	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	silent	c.2544	p.L848	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	79	0	0	39	37	48.68	-	-	-	T	23527741	C	T	23527741	2	4	240	1	0	0	0	0	0	0	0	1	12544	813	29	2		2	PRDM9	5	23527741	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	672	23527741	157387519	1364	20214										
PRDM9	0	genome.wustl.edu	37	chr5	23527874	23527874	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccctacgtctgcagggagGatgagtaagtcattagtaat	12	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	23527874	23527874	G	C	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.2677	p.D893H	0.587	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	47	0	0	37	15	28.85	-	-	-	C	23527874	G	C	23527874	3	2	240	1	0	0	0	0	1	0	0	0	12544	1174	41	2	2715	2	PRDM9	5	23527874	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	133	23527874	157387386	1365	20215										
CDH9	0	genome.wustl.edu	37	chr5	26885945	26885945	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgttgcgactgtagccatCtttccgagtcatgattcctg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	26885945	26885945	C	-	DEL	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	frame_shift_del	c.1660	p.D554fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	22	0	0	19	8	28.57	-	-	-	-	26885945	C	-	26885945	7	5	240	1	0	1	0	1	0	0	0	0	3146	913	32	0	717	0	CDH9	5	26885945	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	3358071	26885945	154029315	1366	20216										
CDH9	0	genome.wustl.edu	37	chr5	26902826	26902826	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtatagagcatttgattttCaaaatctaaattctggagtt	7	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	26902826	26902826	C	G	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.1012	p.E338Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	72	0	0	54	12	18.18	-	-	-	G	26902826	C	G	26902826	3	3	240	1	0	0	0	0	1	0	0	0	3146	835	29	2	1381	2	CDH9	5	26902826	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16881	26902826	154012434	1367	20217										
PDZD2	0	genome.wustl.edu	37	chr5	32091091	32091091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgccgtgctcttcaaaactGagctggagatcacccccagg	11	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	32091091	32091091	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.7537	p.E2513K	0.928	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	29	0	0	26	10	27.78	-	-	-	A	32091091	G	A	32091091	3	1	240	1	0	0	0	0	1	0	0	0	11774	1291	45	2	7611	2	PDZD2	5	32091091	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5188265	32091091	148824169	1368	20218										
ZFR	0	genome.wustl.edu	37	chr5	32364308	32364308	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaaatgcattcaaaaactCttctcagtgcatccccaggg	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	32364308	32364308	C	G	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.2909	p.R970T	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	87	0	0	44	13	22.81	-	-	-	G	32364308	C	G	32364308	3	3	240	1	0	0	0	0	1	0	0	0	17755	913	32	2	327	2	ZFR	5	32364308	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	273217	32364308	148550952	1369	20219										
TARS	0	genome.wustl.edu	37	chr5	33467012	33467012	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgatgccaaattcatggcaGacattgatctggatccaggc	10	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	33467012	33467012	G	A	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.1945	p.D649N	0.995	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	54	0	0	47	11	18.97	-	-	-	A	33467012	G	A	33467012	3	1	240	1	0	0	0	0	1	0	0	0	15651	942	33	2	2015	2	TARS	5	33467012	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1102704	33467012	147448248	1370	20220										
ADAMTS12	0	genome.wustl.edu	37	chr5	33658341	33658341	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagggagtcccgaatcttCattgatgttacaactgcggt	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	33658341	33658341	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.1138	p.E380K	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	60	0	0	50	17	25.37	-	-	-	T	33658341	C	T	33658341	3	4	240	1	0	0	0	0	1	0	0	0	257	835	29	2	3718	2	ADAMTS12	5	33658341	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	191329	33658341	147256919	1371	20221										
ADAMTS12	0	genome.wustl.edu	37	chr5	33662113	33662113	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcagaagctagacagtgtCttttctgcatggtgaactat	10	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	33662113	33662113	C	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.948	p.K316N	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	83	0	0	81	25	23.58	-	-	-	G	33662113	C	G	33662113	3	3	240	1	0	0	0	0	1	0	0	0	257	912	32	2	3912	2	ADAMTS12	5	33662113	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3772	33662113	147253147	1372	20222										
C1QTNF3	0	genome.wustl.edu	37	chr5	34043072	34043072	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctctctcactttctccctCctggagccgctacggccagt	8	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	34043072	34043072	C	T	SNP	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	silent	c.159	p.R53	0.999	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	79	0	0	39	28	41.79	-	-	-	T	34043072	C	T	34043072	2	4	240	1	0	0	0	0	0	0	0	1	1983	854	30	2		2	C1QTNF3	5	34043072	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	380959	34043072	146872188	1373	20223										
C1QTNF3	0	genome.wustl.edu	37	chr5	34043144	34043144	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttattagttcttccgctCacctccatgtattcatcttg	4	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	34043144	34043144	C	T	SNP	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	silent	c.87	p.V29	1.000	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	123	0	0	65	31	32.29	-	-	-	T	34043144	C	T	34043144	2	4	240	1	0	0	0	0	0	0	0	1	1983	813	29	2		2	C1QTNF3	5	34043144	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72	34043144	146872116	1374	20224										
TTC23L	0	genome.wustl.edu	37	chr5	34864560	34864560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actggcagagaagcctatttCaacctgcagaaggcagagag	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	34864560	34864560	C	G	SNP	TTC23L	ENST00000505624	human	ensembl	69_37n	1	known	missense	c.555	p.F185L	0.998	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	91	0	0	66	11	14.29	-	-	-	G	34864560	C	G	34864560	3	3	240	1	0	0	0	0	1	0	0	0	16788	825	29	2	573	2	TTC23L	5	34864560	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	821416	34864560	146050700	1375	20225										
DNAJC21	0	genome.wustl.edu	37	chr5	34945066	34945066	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaaaatttttcaagacctCaaattgatgaaaatccatta	4	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	34945066	34945066	C	G	SNP	DNAJC21	ENST00000382021	human	ensembl	69_37n	1	known	missense	c.1078	p.Q360E	0.043	NULL	pfam_DnaJ_N,pfam_Znf_C2H2_jaz,superfamily_DnaJ_N,smart_DnaJ_N,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC21	HGNC	ENSG00000168724	51	0	0	48	18	27.27	-	-	-	G	34945066	C	G	34945066	3	3	240	1	0	0	0	0	1	0	0	0	4675	827	29	2	1108	2	DNAJC21	5	34945066	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	80506	34945066	145970194	1376	20226										
LMBRD2	0	genome.wustl.edu	37	chr5	36117855	36117855	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctcgatataaatataattAtatgttttttctgccagctg	5	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	36117855	36117855	A	G	SNP	LMBRD2	ENST00000296603	human	ensembl	69_37n	-1	known	silent	c.1284	p.Y428	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD2	HGNC	ENSG00000164187	62	0	0	51	13	20.31	-	-	-	G	36117855	A	G	36117855	2	3	240	1	0	0	0	0	0	0	0	1	8899	456	16	5		5	LMBRD2	5	36117855	Silent	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	1172789	36117855	144797405	1377	20227										
NIPBL	0	genome.wustl.edu	37	chr5	36972067	36972067	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatggagattcttcaacaatGaggaatgctgcatcttttcc	9	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	36972067	36972067	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.792	p.M264I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	65	0	0	49	14	22.22	-	-	-	A	36972067	G	A	36972067	3	1	240	1	0	0	0	0	1	0	0	0	10500	1290	45	2	818	2	NIPBL	5	36972067	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	854212	36972067	143943193	1378	20228										
NIPBL	0	genome.wustl.edu	37	chr5	36976114	36976114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctcgtgtaaggtcttcaGacatggaccagcaagaggat	11	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	36976114	36976114	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.1105	p.D369N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	90	0	0	55	18	24.66	-	-	-	A	36976114	G	A	36976114	3	1	240	1	0	0	0	0	1	0	0	0	10500	942	33	2	1135	2	NIPBL	5	36976114	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4047	36976114	143939146	1379	20229										
NIPBL	0	genome.wustl.edu	37	chr5	37020979	37020979	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgatatttatttgacacaGgtaaactggataagaattcc	7	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	37020979	37020979	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	silent	c.5328	p.Q1776	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	85	0	0	54	23	29.87	-	-	-	A	37020979	G	A	37020979	2	1	240	1	0	0	0	0	0	0	0	1	10500	1014	35	4		4	NIPBL	5	37020979	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44865	37020979	143894281	1380	20230										
C5orf42	0	genome.wustl.edu	37	chr5	37108570	37108570	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactatgacacggagcattaGagccttttaagggataagaa	11	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	37108570	37108570	G	C	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.9242	p.S3081C	0.001	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	78	0	0	64	21	24.42	-	-	-	C	37108570	G	C	37108570	3	2	240	1	0	0	0	0	1	0	0	0	2322	942	33	2	359	2	C5orf42	5	37108570	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	87591	37108570	143806690	1381	20231										
C5orf42	0	genome.wustl.edu	37	chr5	37226482	37226482	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttccaagaccagtttttctGaaaaccactatcttgaaaca	5	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	37226482	37226482	G	C	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2215	p.Q739E	0.006	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	34	0	0	24	4	14.29	-	-	-	C	37226482	G	C	37226482	3	2	240	1	0	0	0	0	1	0	0	0	2322	1299	45	2	7542	2	C5orf42	5	37226482	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	117912	37226482	143688778	1382	20232										
NUP155	0	genome.wustl.edu	37	chr5	37303458	37303458	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaatccatataacgaactCtgttttgatcaactttggcc	6	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	37303458	37303458	C	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.3221	p.R1074T	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	77	0	0	55	18	24.66	-	-	-	G	37303458	C	G	37303458	3	3	240	1	0	0	0	0	1	0	0	0	10829	913	32	2	986	2	NUP155	5	37303458	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76976	37303458	143611802	1383	20233										
NUP155	0	genome.wustl.edu	37	chr5	37370990	37370990	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcttgcaactgacggtcGatgagccgtccagcattttc	9	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	37370990	37370990	G	A	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	silent	c.90	p.I30	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	40	0	0	41	7	14.58	-	-	-	A	37370990	G	A	37370990	2	1	240	1	0	0	0	0	0	0	0	1	10829	1048	37	1		1	NUP155	5	37370990	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67532	37370990	143544270	1384	20234										
RICTOR	0	genome.wustl.edu	37	chr5	38947460	38947460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaccatggaccgcactgagGaagatcgttgcagggtattt	12	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	38947460	38947460	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.4292	p.S1431F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	89	0	0	54	21	28	-	-	-	A	38947460	G	A	38947460	3	1	240	1	0	0	0	0	1	0	0	0	13442	1174	41	2	934	2	RICTOR	5	38947460	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1576470	38947460	141967800	1385	20235										
HEATR7B2	0	genome.wustl.edu	37	chr5	41067250	41067250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagaagcataataaatcaatCgttggacaattgcatcatcc	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	41067250	41067250	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.161	p.R54Q	0.011	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	64	0	0	53	6	10.17	-	-	-	T	41067250	C	T	41067250	3	4	240	1	0	0	0	0	1	0	0	0	7086	884	31	1	4756	1	HEATR7B2	5	41067250	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2119790	41067250	139848010	1386	20236										
GHR	0	genome.wustl.edu	37	chr5	42711468	42711468	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatgagccaatttacatgtGaagaaggtaaaagaaataaa	9	3	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	42711468	42711468	G	A	SNP	GHR	ENST00000230882	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	1.000	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964	81	0	0	40	36	47.37	-	-	-	A	42711468	G	A	42711468	3	1	240	1	0	0	0	0	1	0	0	0	6423	1291	45	2	800	2	GHR	5	42711468	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1644218	42711468	138203792	1387	20237										
HMGCS1	0	genome.wustl.edu	37	chr5	43294891	43294891	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctttgttttctgactgaaGagttcagagctagccttcat	9	9	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	43294891	43294891	G	C	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	silent	c.978	p.L326	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	146	0	0	111	24	17.78	-	-	-	C	43294891	G	C	43294891	2	2	240	1	0	0	0	0	0	0	0	1	7283	929	33	2		2	HMGCS1	5	43294891	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	583423	43294891	137620369	1388	20238										
HCN1	0	genome.wustl.edu	37	chr5	45353208	45353208	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaataaatcttacctctctCagaggatcattgagttcatt	5	9	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	45353208	45353208	C	G	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	silent	c.1371	p.L457	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	129	0	0	74	24	24.49	-	-	-	G	45353208	C	G	45353208	2	3	240	1	0	0	0	0	0	0	0	1	7047	813	29	2		2	HCN1	5	45353208	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2058317	45353208	135562052	1389	20239										
IL31RA	0	genome.wustl.edu	37	chr5	55209369	55209369	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcttattctcattatcctGacagtggcatatggtctcaa	6	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	55209369	55209369	G	A	SNP	IL31RA	ENST00000447346	human	ensembl	69_37n	1	known	silent	c.1707	p.L569	0.010	NULL	pfam_Fibronectin_type3,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509	164	0	0	133	31	18.9	-	-	-	A	55209369	G	A	55209369	2	1	240	1	0	0	0	0	0	0	0	1	7745	1277	45	2		2	IL31RA	5	55209369	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9856161	55209369	125705891	1390	20240										
MAP3K1	0	genome.wustl.edu	37	chr5	56160574	56160574	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgaagtttcagagtggcaGaatcacaccaccccgaagag	11	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	56160574	56160574	G	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.848	p.R283T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	67	0	0	48	16	25	-	-	-	C	56160574	G	C	56160574	3	2	240	1	0	0	0	0	1	0	0	0	9314	942	33	2	862	2	MAP3K1	5	56160574	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	951205	56160574	124754686	1391	20241										
GPBP1	0	genome.wustl.edu	37	chr5	56542228	56542228	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattcccagtagtaggaaatCttccgtcacagccagttaag	9	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	56542228	56542228	C	G	SNP	GPBP1	ENST00000424459	human	ensembl	69_37n	1	known	missense	c.640	p.L214V	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194	84	0	0	43	19	30.65	-	-	-	G	56542228	C	G	56542228	3	3	240	1	0	0	0	0	1	0	0	0	6645	913	32	2	623	2	GPBP1	5	56542228	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	381654	56542228	124373032	1392	20242										
PLK2	0	genome.wustl.edu	37	chr5	57751523	57751523	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctctttgggaatgcaatCagcttccggcatgttttcca	9	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	57751523	57751523	C	G	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	missense	c.1468	p.D490H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	123	0	0	76	13	14.61	-	-	-	G	57751523	C	G	57751523	3	3	240	1	0	0	0	0	1	0	0	0	12170	826	29	2	605	2	PLK2	5	57751523	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1209295	57751523	123163737	1393	20243										
CWC27	0	genome.wustl.edu	37	chr5	64314107	64314107	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaataaaagaaggagggaaGaaagcaaaaagctgatgaga	13	2	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	64314107	64314107	G	A	SNP	CWC27	ENST00000381070	human	ensembl	69_37n	1	known	missense	c.1378	p.E460K	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	53	0	0	50	14	21.88	-	-	-	A	64314107	G	A	64314107	3	1	240	1	0	0	0	0	1	0	0	0	4101	943	33	2	1432	2	CWC27	5	64314107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6562584	64314107	116601153	1394	20244										
TRIM23	0	genome.wustl.edu	37	chr5	64892258	64892258	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taactctcaccttgagtattGaggtaataatgtttccacaa	6	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	64892258	64892258	G	C	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	silent	c.1410	p.L470	0.734	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	150	0	0	44	47	51.65	-	-	-	C	64892258	G	C	64892258	2	2	240	1	0	0	0	0	0	0	0	1	16593	1277	45	2		2	TRIM23	5	64892258	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	578151	64892258	116023002	1395	20245										
ERBB2IP	0	genome.wustl.edu	37	chr5	65349721	65349721	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcactgaagatctctcccctCagaaaagtggtccagttgga	10	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	65349721	65349721	C	T	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	nonsense	c.2575	p.Q859*	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	45	0	0	34	11	24.44	-	-	-	T	65349721	C	T	65349721	4	4	240	1	0	0	0	0	0	1	0	0	5244	827	29	2	2649	2	ERBB2IP	5	65349721	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	457463	65349721	115565539	1396	20246										
MAST4	0	genome.wustl.edu	37	chr5	66400326	66400326	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactggctcgagattgcttgGataaatcccaccagggcctc	10	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	66400326	66400326	G	C	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.1288	p.D430H	1.000	pfam_MA_Ser/Thr_Kinase_dom,superfamily_MAST_pre-PK_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	95	0	0	60	27	31.03	-	-	-	C	66400326	G	C	66400326	3	2	240	1	0	0	0	0	1	0	0	0	9398	1174	41	2	1447	2	MAST4	5	66400326	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1050605	66400326	114514934	1397	20247										
SLC30A5	0	genome.wustl.edu	37	chr5	68414339	68414339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttttaggtacggccgaataGaaattctgtctggatttatt	9	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	68414339	68414339	G	C	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.1453	p.E485Q	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	217	0	0	136	54	28.42	-	-	-	C	68414339	G	C	68414339	3	2	240	1	0	0	0	0	1	0	0	0	14647	943	33	2	1587	2	SLC30A5	5	68414339	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2014013	68414339	112500921	1398	20248										
CCNB1	0	genome.wustl.edu	37	chr5	68463734	68463734	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtggtcttgcttctttcaGaactcgaaaattaatgctga	8	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	68463734	68463734	G	A	SNP	CCNB1	ENST00000256442	human	ensembl	69_37n	1	known	splice_site	c.22-1	e2-1	1.000	-	-	-	no_errors	CCNB1	HGNC	ENSG00000134057	51	0	0	33	12	26.67	-	-	-	A	68463734	G	A	68463734	5	1	240	1	0	0	0	0	0	0	1	0	2940	956	33	2	27	2	CCNB1	5	68463734	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49395	68463734	112451526	1399	20249										
RAD17	0	genome.wustl.edu	37	chr5	68669831	68669831	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaaatctatcttccttaGaacagatttatggtttagaa	8	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	68669831	68669831	G	C	SNP	RAD17	ENST00000380774	human	ensembl	69_37n	1	known	missense	c.217	p.E73Q	0.103	tigrfam_Checkpoint_prot_Rad24_fun/met	tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942	63	0	0	43	17	28.33	-	-	-	C	68669831	G	C	68669831	3	2	240	1	0	0	0	0	1	0	0	0	13062	943	33	2	236	2	RAD17	5	68669831	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	206097	68669831	112245429	1400	20250										
TNPO1	0	genome.wustl.edu	37	chr5	72189267	72189267	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttatgatagtggctcttGatttactgagtggcctggct	11	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	72189267	72189267	G	C	SNP	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	missense	c.1960	p.D654H	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	126	0	0	73	29	28.43	-	-	-	C	72189267	G	C	72189267	3	2	240	1	0	0	0	0	1	0	0	0	16430	1290	45	2	2026	2	TNPO1	5	72189267	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3519436	72189267	108725993	1401	20251										
FCHO2	0	genome.wustl.edu	37	chr5	72311486	72311486	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaagaaactcatctcattCacataaaggaaattatagga	6	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	72311486	72311486	C	G	SNP	FCHO2	ENST00000341845	human	ensembl	69_37n	1	known	missense	c.634	p.H212D	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,smart_FCH,pfscan_FCH	-	no_errors	FCHO2	HGNC	ENSG00000157107	102	0	0	70	25	26.32	-	-	-	G	72311486	C	G	72311486	3	3	240	1	0	0	0	0	1	0	0	0	5834	826	29	2	660	2	FCHO2	5	72311486	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	122219	72311486	108603774	1402	20252										
GCNT4	0	genome.wustl.edu	37	chr5	74325484	74325484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattgggaagcttttctcctCctttgagacaagcttttgag	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	74325484	74325484	C	T	SNP	GCNT4	ENST00000322348	human	ensembl	69_37n	-1	known	missense	c.379	p.E127K	0.389	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928	87	0	0	59	28	32.18	-	-	-	T	74325484	C	T	74325484	3	4	240	1	0	0	0	0	1	0	0	0	6353	864	30	2	986	2	GCNT4	5	74325484	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2013998	74325484	106589776	1403	20253										
HMGCR	0	genome.wustl.edu	37	chr5	74655021	74655021	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagactaccacagaggctatGattgaggtcaacattaacaa	8	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	74655021	74655021	G	C	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	missense	c.2184	p.M728I	1.000	pfam_HMG_CoA_Rdtase,superfamily_HMG_CoA_Rdtase_sub-bd,pfscan_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	80	0	0	63	16	20.25	-	-	-	C	74655021	G	C	74655021	3	2	240	1	0	0	0	0	1	0	0	0	7282	1290	45	2	2246	2	HMGCR	5	74655021	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	329537	74655021	106260239	1404	20254										
SV2C	0	genome.wustl.edu	37	chr5	75587084	75587084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaaacaaatagatgagctGattgaaattgagagtgacac	9	6	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	75587084	75587084	G	A	SNP	SV2C	ENST00000502798	human	ensembl	69_37n	1	known	silent	c.1176	p.L392	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2C	HGNC	ENSG00000122012	149	0	0	74	35	32.11	-	-	-	A	75587084	G	A	75587084	2	1	240	1	0	0	0	0	0	0	0	1	15510	1277	45	2		2	SV2C	5	75587084	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	932063	75587084	105328176	1405	20255										
CMYA5	0	genome.wustl.edu	37	chr5	79025925	79025925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcaccaggtctggcagcatCtacccaggatggtttggacc	12	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79025925	79025925	C	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.1337	p.S446C	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	21	0	0	26	8	23.53	-	-	-	G	79025925	C	G	79025925	3	3	240	1	0	0	0	0	1	0	0	0	3620	913	32	2	1343	2	CMYA5	5	79025925	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3438841	79025925	101889335	1406	20256										
CMYA5	0	genome.wustl.edu	37	chr5	79028541	79028541	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacacctatagtgcttcattCagcttcctcaggagtggaaa	8	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79028541	79028541	C	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	nonsense	c.3953	p.S1318*	0.001	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	47	0	0	36	7	16.28	-	-	-	G	79028541	C	G	79028541	4	3	240	1	0	0	0	0	0	1	0	0	3620	838	29	2	3959	2	CMYA5	5	79028541	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2616	79028541	101886719	1407	20257										
CMYA5	0	genome.wustl.edu	37	chr5	79030113	79030113	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attacctgatgtaagcacctCttctgaagataaacaagatc	6	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79030113	79030113	C	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.5525	p.S1842C	0.061	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	70	0	0	45	9	16.67	-	-	-	G	79030113	C	G	79030113	3	3	240	1	0	0	0	0	1	0	0	0	3620	913	32	2	5531	2	CMYA5	5	79030113	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1572	79030113	101885147	1408	20258										
CMYA5	0	genome.wustl.edu	37	chr5	79032478	79032478	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaagtaaagttttggtggaGaaaaccaagactttcctgcc	10	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79032478	79032478	G	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.7890	p.E2630D	0.067	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	64	0	0	44	10	18.52	-	-	-	C	79032478	G	C	79032478	3	2	240	1	0	0	0	0	1	0	0	0	3620	933	33	2	7896	2	CMYA5	5	79032478	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2365	79032478	101882782	1409	20259										
THBS4	0	genome.wustl.edu	37	chr5	79335996	79335996	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatgatctctatgtgatttCcaccttcaagctgcagacta	7	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79335996	79335996	C	G	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	missense	c.185	p.S62C	0.754	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	59	0	0	43	17	28.33	-	-	-	G	79335996	C	G	79335996	3	3	240	1	0	0	0	0	1	0	0	0	15951	855	30	2	191	2	THBS4	5	79335996	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	303518	79335996	101579264	1410	20260										
SERINC5	0	genome.wustl.edu	37	chr5	79498722	79498722	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacgtgctctttcatcttgtGagccacggttgttgacatca	9	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79498722	79498722	G	T	SNP	SERINC5	ENST00000509193	human	ensembl	69_37n	-1	known	missense	c.178	p.H60N	0.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	73	0	0	54	17	23.29	-	-	-	T	79498722	G	T	79498722	3	4	240	1	0	0	0	0	1	0	0	0	14171	1290	45	2	1289	2	SERINC5	5	79498722	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	162726	79498722	101416538	1411	20261										
MSH3	0	genome.wustl.edu	37	chr5	79952348	79952348	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgggaatgtctggcaactCtggtgagttgtgggggattc	16	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	79952348	79952348	C	G	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.356	p.S119C	0.026	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	117	0	0	89	26	22.61	-	-	-	G	79952348	C	G	79952348	3	3	240	1	0	0	0	0	1	0	0	0	9943	913	32	2	362	2	MSH3	5	79952348	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	453626	79952348	100962912	1412	20262										
MSH3	0	genome.wustl.edu	37	chr5	80088623	80088623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgattgatgtgttgctggGagaacaggatcaatatgtcc	13	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	80088623	80088623	G	A	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.2615	p.G872E	1.000	pfam_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	139	0	0	77	20	20.62	-	-	-	A	80088623	G	A	80088623	3	1	240	1	0	0	0	0	1	0	0	0	9943	1174	41	2	2689	2	MSH3	5	80088623	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	136275	80088623	100826637	1413	20263										
RASGRF2	0	genome.wustl.edu	37	chr5	80369113	80369113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgctgaaagtatgaggaaGagaaaccagattgtgttcac	11	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	80369113	80369113	G	C	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	missense	c.729	p.K243N	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	120	0	0	92	26	22.03	-	-	-	C	80369113	G	C	80369113	3	2	240	1	0	0	0	0	1	0	0	0	13156	933	33	2	747	2	RASGRF2	5	80369113	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	280490	80369113	100546147	1414	20264										
XRCC4	0	genome.wustl.edu	37	chr5	82554396	82554396	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcaagtcttgatgtcactGatattgcaccaagtagaaaa	7	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	82554396	82554396	G	A	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.793	p.D265N	0.998	pfam_DNA_ds_break_repair_XRCC4	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	117	0	0	77	20	20.62	-	-	-	A	82554396	G	A	82554396	3	1	240	1	0	0	0	0	1	0	0	0	17552	1290	45	2	815	2	XRCC4	5	82554396	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2185283	82554396	98360864	1415	20265										
VCAN	0	genome.wustl.edu	37	chr5	82837299	82837299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgtcttctcagacaccatCatctcccctcactatctact	3	16	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	82837299	82837299	C	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.8477	p.S2826L	0.118	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	82	0	0	60	18	23.08	-	-	-	T	82837299	C	T	82837299	3	4	240	1	0	0	0	0	1	0	0	0	17235	838	29	2	8503	2	VCAN	5	82837299	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	282903	82837299	98077961	1416	20266										
HAPLN1	0	genome.wustl.edu	37	chr5	82937395	82937395	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgaagcgcactgcagcctCagtaggactgcagcgccttc	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	82937395	82937395	C	T	SNP	HAPLN1	ENST00000274341	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like	-	no_errors	HAPLN1	HGNC	ENSG00000145681	43	0	0	35	10	22.22	-	-	-	T	82937395	C	T	82937395	3	4	240	1	0	0	0	0	1	0	0	0	7005	835	29	2	83	2	HAPLN1	5	82937395	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100096	82937395	97977865	1417	20267										
EDIL3	0	genome.wustl.edu	37	chr5	83525691	83525691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgctgaagttggttcttCttcatctgatgctatgataa	8	8	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	83525691	83525691	C	T	SNP	EDIL3	ENST00000296591	human	ensembl	69_37n	-1	known	missense	c.208	p.E70K	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176	127	0	0	85	30	26.09	-	-	-	T	83525691	C	T	83525691	3	4	240	1	0	0	0	0	1	0	0	0	4950	922	32	2	1270	2	EDIL3	5	83525691	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	588296	83525691	97389569	1418	20268										
MBLAC2	0	genome.wustl.edu	37	chr5	89757000	89757000	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatactagggcgaggtcctaGaatttgttacacgtagagct	12	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	89757000	89757000	G	A	SNP	MBLAC2	ENST00000316610	human	ensembl	69_37n	-1	known	missense	c.824	p.S275F	1.000	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	MBLAC2	HGNC	ENSG00000176055	28	0	0	31	7	17.95	-	-	-	A	89757000	G	A	89757000	3	1	240	1	0	0	0	0	1	0	0	0	9423	942	33	2	19	2	MBLAC2	5	89757000	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6231309	89757000	91158260	1419	20269										
GPR98	0	genome.wustl.edu	37	chr5	89969930	89969930	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaatgagtatttccgtgtGacattggtttctgcaattcc	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	89969930	89969930	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	silent	c.4989	p.V1663	0.979	pfam_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	150	0	0	62	28	31.11	-	-	-	A	89969930	G	A	89969930	2	1	240	1	0	0	0	0	0	0	0	1	6772	1277	45	2		2	GPR98	5	89969930	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	212930	89969930	90945330	1420	20270										
GPR98	0	genome.wustl.edu	37	chr5	90046507	90046507	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtgatatatttcctacctCaggagtggtatgtaatttac	8	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	90046507	90046507	C	T	SNP	GPR98	ENST00000509621	human	ensembl	69_37n	1	putative	nonsense	c.3811	p.Q1271*	1.000	NULL	pfam_Calx_beta,pfam_EPTP,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR98	HGNC	ENSG00000164199	68	0	0	71	14	16.28	-	-	-	T	90046507	C	T	90046507	4	4	240	1	0	0	0	0	0	1	0	0	6772	838	29	2	11324	2	GPR98	5	90046507	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76577	90046507	90868753	1421	20271										
POU5F2	0	genome.wustl.edu	37	chr5	93076442	93076442	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccggctgtccccacaatCtcccgtggggaagcatcatt	11	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	93076442	93076442	C	G	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.828	p.E276D	0.011	superfamily_Homeodomain-like	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	51	0	0	34	10	22.73	-	-	-	G	93076442	C	G	93076442	3	3	240	1	0	0	0	0	1	0	0	0	12356	912	32	2	162	2	POU5F2	5	93076442	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3029935	93076442	87838818	1422	20272										
POU5F2	0	genome.wustl.edu	37	chr5	93077087	93077087	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggggacccaggggaatcctCcacacgtcagggcctgggca	15	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	93077087	93077087	C	G	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.183	p.W61C	0.840	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	19	0	0	14	4	22.22	-	-	-	G	93077087	C	G	93077087	3	3	240	1	0	0	0	0	1	0	0	0	12356	856	30	2	807	2	POU5F2	5	93077087	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	645	93077087	87838173	1423	20273										
FAM81B	0	genome.wustl.edu	37	chr5	94727171	94727171	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agattgtttttcaaaaatatCaaatctacaaaaaataaagc	3	5	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	94727171	94727171	C	G	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.78	p.I26M	0.001	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	35	0	0	30	8	21.05	-	-	-	G	94727171	C	G	94727171	3	3	240	1	0	0	0	0	1	0	0	0	5674	816	29	2	80	2	FAM81B	5	94727171	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1650084	94727171	86188089	1424	20274										
FAM81B	0	genome.wustl.edu	37	chr5	94727210	94727210	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggaaaagcaagcatcatGagttcaggtacttatggact	11	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	94727210	94727210	G	A	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.117	p.M39I	0.998	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	31	0	0	27	8	22.86	-	-	-	A	94727210	G	A	94727210	3	1	240	1	0	0	0	0	1	0	0	0	5674	1290	45	2	119	2	FAM81B	5	94727210	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39	94727210	86188050	1425	20275										
ERAP1	0	genome.wustl.edu	37	chr5	96119636	96119636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaggcttttaccttgaattGagtttccacttcattcatat	5	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	96119636	96119636	G	C	SNP	ERAP1	ENST00000296754	human	ensembl	69_37n	-1	known	missense	c.2092	p.Q698E	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	105	0	0	75	18	19.35	-	-	-	C	96119636	G	C	96119636	3	2	240	1	0	0	0	0	1	0	0	0	5240	1299	45	2	790	2	ERAP1	5	96119636	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1392426	96119636	84795624	1426	20276										
ERAP2	0	genome.wustl.edu	37	chr5	96237363	96237363	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggttttccaggaagaccctGaatggagggccctgcaggag	16	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	96237363	96237363	G	C	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	missense	c.1726	p.E576Q	0.003	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	39	0	0	29	5	14.71	-	-	-	C	96237363	G	C	96237363	3	2	240	1	0	0	0	0	1	0	0	0	5241	1291	45	2	1764	2	ERAP2	5	96237363	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	117727	96237363	84677897	1427	20277										
LNPEP	0	genome.wustl.edu	37	chr5	96333778	96333778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagattccttaaattcatctCatccaatatcatcatctgtt	2	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	96333778	96333778	C	T	SNP	LNPEP	ENST00000231368	human	ensembl	69_37n	1	known	missense	c.1582	p.H528Y	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441	94	0	0	69	22	24.18	-	-	-	T	96333778	C	T	96333778	3	4	240	1	0	0	0	0	1	0	0	0	8920	826	29	2	1612	2	LNPEP	5	96333778	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96415	96333778	84581482	1428	20278										
CHD1	0	genome.wustl.edu	37	chr5	98238624	98238624	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctttatgctttttccttttGacctcacttgatgagtcatc	5	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	98238624	98238624	G	C	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	silent	c.417	p.V139	0.372	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	156	0	0	99	13	11.61	-	-	-	C	98238624	G	C	98238624	2	2	240	1	0	0	0	0	0	0	0	1	3352	1277	45	2		2	CHD1	5	98238624	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1904846	98238624	82676636	1429	20279										
SLCO4C1	0	genome.wustl.edu	37	chr5	101583077	101583077	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acattttccagctttagcttCaaaaccaaaagtttctgcag	5	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	101583077	101583077	C	G	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	missense	c.1690	p.E564Q	0.991	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	86	0	0	58	23	28.4	-	-	-	G	101583077	C	G	101583077	3	3	240	1	0	0	0	0	1	0	0	0	14819	835	29	2	500	2	SLCO4C1	5	101583077	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3344453	101583077	79332183	1430	20280										
PAM	0	genome.wustl.edu	37	chr5	102363906	102363906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagattctgaacacaaactcGagacgagttcaggaagagta	10	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	102363906	102363906	G	A	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	missense	c.2710	p.E904K	0.994	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	124	0	0	94	28	22.95	-	-	-	A	102363906	G	A	102363906	3	1	240	1	0	0	0	0	1	0	0	0	11485	1059	37	1	2804	1	PAM	5	102363906	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	780829	102363906	78551354	1431	20281										
PPIP5K2	0	genome.wustl.edu	37	chr5	102530701	102530701	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaccaccagctaccttaaaGagcactaaagcaagcagcaa	6	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	102530701	102530701	G	C	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	missense	c.3594	p.K1198N	0.872	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	96	0	0	73	25	25.51	-	-	-	C	102530701	G	C	102530701	3	2	240	1	0	0	0	0	1	0	0	0	12410	933	33	2	3641	2	PPIP5K2	5	102530701	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	166795	102530701	78384559	1432	20282										
APC	0	genome.wustl.edu	37	chr5	112176467	112176467	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaaggtgatattcttgcaGaatgcattaattctgctatg	10	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	112176467	112176467	G	C	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.5176	p.E1726Q	1.000	pfam_SAMP	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	25	0	0	34	14	29.17	-	-	-	C	112176467	G	C	112176467	3	2	240	1	0	0	0	0	1	0	0	0	764	943	33	2	5234	2	APC	5	112176467	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9645766	112176467	68738793	1433	20283										
APC	0	genome.wustl.edu	37	chr5	112179740	112179740	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataacaacacaaagaagcgaGattccaaaactgacagcaca	6	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	112179740	112179740	G	C	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.8449	p.D2817H	1.000	pfam_EB1-bd	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	57	0	0	41	12	22.64	-	-	-	C	112179740	G	C	112179740	3	2	240	1	0	0	0	0	1	0	0	0	764	942	33	2	8507	2	APC	5	112179740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3273	112179740	68735520	1434	20284										
MCC	0	genome.wustl.edu	37	chr5	112720796	112720796	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacaagctgcatgcggcatCttgtgaaatcctgaaaggaa	11	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	112720796	112720796	C	G	SNP	MCC	ENST00000408903	human	ensembl	69_37n	-1	putative	missense	c.284	p.R95T	1.000	smart_EF_hand_Ca-bd	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MCC	HGNC	ENSG00000171444	122	0	0	99	38	27.74	-	-	-	G	112720796	C	G	112720796	3	3	240	1	0	0	0	0	1	0	0	0	9444	913	32	2	2908	2	MCC	5	112720796	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	541056	112720796	68194464	1435	20285										
TSSK1B	0	genome.wustl.edu	37	chr5	112770087	112770087	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagctgaagtcggacagcttGatgttgaagtccttgtcaag	12	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	112770087	112770087	G	C	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	missense	c.450	p.I150M	0.932	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	90	0	0	63	14	18.18	-	-	-	C	112770087	G	C	112770087	3	2	240	1	0	0	0	0	1	0	0	0	16764	1280	45	2	657	2	TSSK1B	5	112770087	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49291	112770087	68145173	1436	20286										
PGGT1B	0	genome.wustl.edu	37	chr5	114557705	114557705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccacaaaaagttgatcctCctgttaatcaaaaccacaca	4	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	114557705	114557705	C	G	SNP	PGGT1B	ENST00000419445	human	ensembl	69_37n	-1	known	missense	c.659	p.G220A	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219	128	0	0	87	26	23.01	-	-	-	G	114557705	C	G	114557705	3	3	240	1	0	0	0	0	1	0	0	0	11863	869	30	2	486	2	PGGT1B	5	114557705	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1787618	114557705	66357555	1437	20287										
ATG12	0	genome.wustl.edu	37	chr5	115177243	115177243	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacacagactgcggctcctCcgccatcttgcttggagaca	9	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	115177243	115177243	C	G	SNP	ATG12	ENST00000274459	human	ensembl	69_37n	-1	known	missense	c.148	p.E50Q	1.000	NULL	pfam_Autophagy-rel_prot_12,pfam_Atg8_ubiquitin-like	-	no_errors	ATG12	HGNC	ENSG00000145782	47	0	0	37	14	27.45	-	-	-	G	115177243	C	G	115177243	3	3	240	1	0	0	0	0	1	0	0	0	1094	864	30	2	431	2	ATG12	5	115177243	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	619538	115177243	65738017	1438	20288										
COMMD10	0	genome.wustl.edu	37	chr5	115426815	115426815	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaagaggaagaaaaacttCaagcggcattttctctagag	10	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	115426815	115426815	C	G	SNP	COMMD10	ENST00000274458	human	ensembl	69_37n	1	known	missense	c.172	p.Q58E	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD10	HGNC	ENSG00000145781	66	0	0	46	17	26.98	-	-	-	G	115426815	C	G	115426815	3	3	240	1	0	0	0	0	1	0	0	0	3745	827	29	2	182	2	COMMD10	5	115426815	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	249572	115426815	65488445	1439	20289										
DMXL1	0	genome.wustl.edu	37	chr5	118485468	118485468	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggtctttttgaagcagctCatgtactttccccgactcta	7	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	118485468	118485468	C	T	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.3946	p.H1316Y	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	110	0	0	92	33	26.4	-	-	-	T	118485468	C	T	118485468	3	4	240	1	0	0	0	0	1	0	0	0	4630	826	29	2	4016	2	DMXL1	5	118485468	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3058653	118485468	62429792	1440	20290										
DMXL1	0	genome.wustl.edu	37	chr5	118506932	118506932	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatggtgggggtcttgcatCtgtaagaatggaattgattt	13	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	118506932	118506932	C	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.6446	p.S2149Y	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	82	0	0	42	14	25	-	-	-	A	118506932	C	A	118506932	3	1	240	1	0	0	0	0	1	0	0	0	4630	913	32	2	6540	2	DMXL1	5	118506932	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21464	118506932	62408328	1441	20291										
CEP120	0	genome.wustl.edu	37	chr5	122724186	122724186	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatactccttaagtctattGaaaagcaaaaatgatgtgat	7	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	122724186	122724186	G	C	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	nonsense	c.1370	p.S457*	1.000	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	104	0	0	48	52	52	-	-	-	C	122724186	G	C	122724186	4	2	240	1	0	0	0	0	0	1	0	0	3275	1294	45	2	1638	2	CEP120	5	122724186	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4217254	122724186	58191074	1442	20292										
ZNF608	0	genome.wustl.edu	37	chr5	123974839	123974839	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttaccttctttgtccagGaaacattccagatgcagatg	7	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	123974839	123974839	G	C	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.4519	p.P1507A	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	74	0	0	64	21	24.71	-	-	-	C	123974839	G	C	123974839	3	2	240	1	0	0	0	0	1	0	0	0	18130	1174	41	2	27	2	ZNF608	5	123974839	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1250653	123974839	56940421	1443	20293										
MEGF10	0	genome.wustl.edu	37	chr5	126746149	126746149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctgccagtgtgtcaacgGagggaagtgttaccacgtga	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	126746149	126746149	G	C	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	missense	c.986	p.G329A	0.998	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	104	0	0	102	25	19.69	-	-	-	C	126746149	G	C	126746149	3	2	240	1	0	0	0	0	1	0	0	0	9531	1174	41	2	1016	2	MEGF10	5	126746149	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2771310	126746149	54169111	1444	20294										
FBN2	0	genome.wustl.edu	37	chr5	127611847	127611847	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggggactgggagcattcatCaaggtctaagtaaaagtgat	13	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	127611847	127611847	C	G	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.7477	p.D2493H	1.000	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	108	0	0	85	23	21.3	-	-	-	G	127611847	C	G	127611847	3	3	240	1	0	0	0	0	1	0	0	0	5749	826	29	2	1289	2	FBN2	5	127611847	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	865698	127611847	53303413	1445	20295										
FBN2	0	genome.wustl.edu	37	chr5	127680194	127680194	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaggaaatgctttgcattCattgatgtctaaaagcagaa	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	127680194	127680194	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.3226	p.E1076K	1.000	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	65	0	0	64	16	20	-	-	-	T	127680194	C	T	127680194	3	4	240	1	0	0	0	0	1	0	0	0	5749	835	29	2	5676	2	FBN2	5	127680194	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68347	127680194	53235066	1446	20296										
ADAMTS19	0	genome.wustl.edu	37	chr5	129001211	129001211	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttatgtagaagtgctggtGatacctgctggagcaagaag	15	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	129001211	129001211	G	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	silent	c.2427	p.V809	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	130	0	0	100	18	15.25	-	-	-	A	129001211	G	A	129001211	2	1	240	1	0	0	0	0	0	0	0	1	264	1277	45	2		2	ADAMTS19	5	129001211	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1321017	129001211	51914049	1447	20297										
ACSL6	0	genome.wustl.edu	37	chr5	131323825	131323825	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgaatgggtccatgaggatGatcagcttgaggcctggagt	15	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	131323825	131323825	G	A	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	silent	c.747	p.I249	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	100	0	0	104	29	21.8	-	-	-	A	131323825	G	A	131323825	2	1	240	1	0	0	0	0	0	0	0	1	181	1280	45	2		2	ACSL6	5	131323825	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2322614	131323825	49591435	1448	20298										
SLC22A4	0	genome.wustl.edu	37	chr5	131663033	131663033	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttagagaggctgaagatatCatccaaaaagctgcaaaaat	8	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	131663033	131663033	C	G	SNP	SLC22A4	ENST00000200652	human	ensembl	69_37n	1	known	missense	c.888	p.I296M	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208	88	0	0	50	18	26.47	-	-	-	G	131663033	C	G	131663033	3	3	240	1	0	0	0	0	1	0	0	0	14545	816	29	2	906	2	SLC22A4	5	131663033	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	339208	131663033	49252227	1449	20299										
RAD50	0	genome.wustl.edu	37	chr5	131940517	131940517	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttctagtaagattgaattGaatcgtaagcttatacagga	9	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	131940517	131940517	G	A	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	silent	c.2544	p.L848	1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	82	0	0	47	19	28.79	-	-	-	A	131940517	G	A	131940517	2	1	240	1	0	0	0	0	0	0	0	1	13067	1281	45	2		2	RAD50	5	131940517	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	277484	131940517	48974743	1450	20300										
GDF9	0	genome.wustl.edu	37	chr5	132197570	132197570	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagctgactaaagctaagtCtaaagtcatggagctcacac	8	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	132197570	132197570	C	G	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.1076	p.R359T	0.954	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	24	0	0	23	8	25.81	-	-	-	G	132197570	C	G	132197570	3	3	240	1	0	0	0	0	1	0	0	0	6371	913	32	2	292	2	GDF9	5	132197570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	257053	132197570	48717690	1451	20301										
HSPA4	0	genome.wustl.edu	37	chr5	132403211	132403211	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaatctaaccttgcatatGatattgtgcagttgcctaca	6	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	132403211	132403211	G	T	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	missense	c.268	p.D90Y	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	102	0	0	78	25	24.27	-	-	-	T	132403211	G	T	132403211	3	4	240	1	0	0	0	0	1	0	0	0	7465	1290	45	2	278	2	HSPA4	5	132403211	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	205641	132403211	48512049	1452	20302										
HSPA4	0	genome.wustl.edu	37	chr5	132424819	132424819	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtaccatatccaatatctCtgagatggaattctccagct	6	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	132424819	132424819	C	T	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	silent	c.1210	p.L404	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	114	0	0	79	30	27.52	-	-	-	T	132424819	C	T	132424819	2	4	240	1	0	0	0	0	0	0	0	1	7465	912	32	2		2	HSPA4	5	132424819	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21608	132424819	48490441	1453	20303										
TCF7	0	genome.wustl.edu	37	chr5	133451662	133451662	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtctactccgccttcaatCtgctcatgcattacccaccc	4	19	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	133451662	133451662	C	A	SNP	TCF7	ENST00000321584	human	ensembl	69_37n	1	known	missense	c.379	p.L127M	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7	HGNC	ENSG00000081059	67	0	0	40	18	31.03	-	-	-	A	133451662	C	A	133451662	3	1	240	1	0	0	0	0	1	0	0	0	15791	912	32	2	389	2	TCF7	5	133451662	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1026843	133451662	47463598	1454	20304										
SEC24A	0	genome.wustl.edu	37	chr5	134018068	134018068	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttaactttatatagttcctGaagaattcttgtacaaccct	5	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	134018068	134018068	G	A	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.1387	p.E463K	1.000	pfam_Znf_Sec23_Sec24	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	122	0	0	60	27	31.03	-	-	-	A	134018068	G	A	134018068	3	1	240	1	0	0	0	0	1	0	0	0	14082	1291	45	2	1421	2	SEC24A	5	134018068	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	566406	134018068	46897192	1455	20305										
SEC24A	0	genome.wustl.edu	37	chr5	134039561	134039561	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacagatgtcagtggaagaGagtcttactgacactcagtt	11	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	134039561	134039561	G	A	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	silent	c.2379	p.E793	0.964	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	105	0	0	73	13	15.12	-	-	-	A	134039561	G	A	134039561	2	1	240	1	0	0	0	0	0	0	0	1	14082	933	33	2		2	SEC24A	5	134039561	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21493	134039561	46875699	1456	20306										
SEC24A	0	genome.wustl.edu	37	chr5	134041088	134041088	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaatgatgtctttcttggaGctgatgttcaagcaatttca	9	6	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	134041088	134041088	G	C	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.2512	p.A838P	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	253	1	0.39	164	48	22.54	-	-	-	C	134041088	G	C	134041088	3	2	240	1	0	0	0	0	1	0	0	0	14082	971	34	4	2578	4	SEC24A	5	134041088	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1527	134041088	46874172	1457	20307										
TXNDC15	0	genome.wustl.edu	37	chr5	134229287	134229287	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcccctcactttaactctCtgccccgggcatttccagct	7	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	134229287	134229287	C	T	SNP	TXNDC15	ENST00000358387	human	ensembl	69_37n	1	known	silent	c.697	p.L233	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC15	HGNC	ENSG00000113621	145	0	0	114	27	19.01	-	-	-	T	134229287	C	T	134229287	2	4	240	1	0	0	0	0	0	0	0	1	16891	912	32	2		2	TXNDC15	5	134229287	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	188199	134229287	46685973	1458	20308										
CATSPER3	0	genome.wustl.edu	37	chr5	134344659	134344659	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgttcgtgggtgtgatgatCatgcacacagaggtgaggcc	15	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	134344659	134344659	C	T	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	silent	c.804	p.I268	1.000	pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	133	0	0	162	23	12.43	-	-	-	T	134344659	C	T	134344659	2	4	240	1	0	0	0	0	0	0	0	1	2714	816	29	2		2	CATSPER3	5	134344659	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	115372	134344659	46570601	1459	20309										
BRD8	0	genome.wustl.edu	37	chr5	137488314	137488314	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctcagcctctggatcctCagtttccctccagttgccca	6	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137488314	137488314	C	T	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	missense	c.2713	p.E905K	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	108	0	0	91	21	18.75	-	-	-	T	137488314	C	T	137488314	3	4	240	1	0	0	0	0	1	0	0	0	1514	835	29	2	1022	2	BRD8	5	137488314	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3143655	137488314	43426946	1460	20310										
KIF20A	0	genome.wustl.edu	37	chr5	137518127	137518127	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacatatggagtcactaactCagggaaaacccacacgattc	7	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137518127	137518127	C	G	SNP	KIF20A	ENST00000394894	human	ensembl	69_37n	1	known	nonsense	c.491	p.S164*	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	51	0	0	52	14	21.21	-	-	-	G	137518127	C	G	137518127	4	3	240	1	0	0	0	0	0	1	0	0	8338	838	29	2	505	2	KIF20A	5	137518127	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29813	137518127	43397133	1461	20311										
KDM3B	0	genome.wustl.edu	37	chr5	137721943	137721943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagccagggctggatcagaGagccaagcagccaccgtcta	13	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137721943	137721943	G	C	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.1013	p.R338T	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	97	0	0	68	29	29.9	-	-	-	C	137721943	G	C	137721943	3	2	240	1	0	0	0	0	1	0	0	0	8181	942	33	2	1039	2	KDM3B	5	137721943	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	203816	137721943	43193317	1462	20312										
ETF1	0	genome.wustl.edu	37	chr5	137854525	137854525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaatctggtctttgggagGaatgatcaatgatatcatgc	11	5	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137854525	137854525	G	A	SNP	ETF1	ENST00000360541	human	ensembl	69_37n	-1	known	missense	c.118	p.P40S	1.000	pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705	107	0	0	88	29	24.79	-	-	-	A	137854525	G	A	137854525	3	1	240	1	0	0	0	0	1	0	0	0	5305	1174	41	2	1231	2	ETF1	5	137854525	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	132582	137854525	43060735	1463	20313										
HSPA9	0	genome.wustl.edu	37	chr5	137893676	137893676	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggctggtggaattccaatCtaaaataaataatatccaga	9	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137893676	137893676	C	G	SNP	HSPA9	ENST00000297185	human	ensembl	69_37n	-1	known	splice_site	c.1516-1	e13-1	1.000	-	-	-	no_errors	HSPA9	HGNC	ENSG00000113013	48	0	0	45	13	22.41	-	-	-	G	137893676	C	G	137893676	5	3	240	1	0	0	0	0	0	0	1	0	7470	927	32	2	544	2	HSPA9	5	137893676	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39151	137893676	43021584	1464	20314										
HSPA9	0	genome.wustl.edu	37	chr5	137902325	137902325	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtgtctcacctgcacagatGaggagagttcacatttagcc	10	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	137902325	137902325	G	A	SNP	HSPA9	ENST00000297185	human	ensembl	69_37n	-1	known	missense	c.962	p.S321L	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013	111	0	0	68	25	26.88	-	-	-	A	137902325	G	A	137902325	3	1	240	1	0	0	0	0	1	0	0	0	7470	1294	45	2	1113	2	HSPA9	5	137902325	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8649	137902325	43012935	1465	20315										
LRRTM2	0	genome.wustl.edu	37	chr5	138210021	138210021	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggcaaattgatctctttCgagctctgtgatgtgattgt	11	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	138210021	138210021	C	G	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	missense	c.229	p.E77Q	0.994	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	98	0	0	63	22	25.88	-	-	-	G	138210021	C	G	138210021	3	3	240	1	0	0	0	0	1	0	0	0	9106	893	31	3	1325	3	LRRTM2	5	138210021	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	307696	138210021	42705239	1466	20316										
LRRTM2	0	genome.wustl.edu	37	chr5	138210060	138210060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcctcagggacaggcccaGagagcccttgtctgtggcgt	15	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	138210060	138210060	G	C	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	missense	c.190	p.L64V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	70	0	0	45	18	28.57	-	-	-	C	138210060	G	C	138210060	3	2	240	1	0	0	0	0	1	0	0	0	9106	933	33	2	1364	2	LRRTM2	5	138210060	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39	138210060	42705200	1467	20317										
PSD2	0	genome.wustl.edu	37	chr5	139193008	139193008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagcctcgactccctagaCgggctgagcctcacggatga	12	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	139193008	139193008	C	T	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	silent	c.486	p.D162	0.915	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	26	0	0	19	4	17.39	-	-	-	T	139193008	C	T	139193008	2	4	240	1	0	0	0	0	0	0	0	1	12727	535	19	1		1	PSD2	5	139193008	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	982948	139193008	41722252	1468	20318										
NRG2	0	genome.wustl.edu	37	chr5	139267080	139267080	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctggctcttcatcttcttCaacttgggccgggtggctgt	12	11	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	139267080	139267080	C	T	SNP	NRG2	ENST00000545385	human	ensembl	69_37n	-1	known	silent	c.717	p.L239	1.000	pfscan_Ig-like	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like	-	no_errors	NRG2	HGNC	ENSG00000158458	103	0	0	95	27	22.13	-	-	-	T	139267080	C	T	139267080	2	4	240	1	0	0	0	0	0	0	0	1	10721	825	29	2		2	NRG2	5	139267080	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	74072	139267080	41648180	1469	20319										
HBEGF	0	genome.wustl.edu	37	chr5	139722246	139722246	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggagcccggagctccttCacatatttgcattctccatg	10	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	139722246	139722246	C	T	SNP	HBEGF	ENST00000230990	human	ensembl	69_37n	-1	known	silent	c.372	p.V124	1.000	pfscan_EG-like_dom	pfscan_EG-like_dom	-	no_errors	HBEGF	HGNC	ENSG00000113070	98	0	0	75	22	22.68	-	-	-	T	139722246	C	T	139722246	2	4	240	1	0	0	0	0	0	0	0	1	7032	813	29	2		2	HBEGF	5	139722246	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	455166	139722246	41193014	1470	20320										
PCDHA6	0	genome.wustl.edu	37	chr5	140210053	140210053	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggagaatcaggatttaaatGaagatcatgatgccaaagta	10	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140210053	140210053	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.2377	p.E793K	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	39	0	0	25	7	21.88	-	-	-	A	140210053	G	A	140210053	3	1	240	1	0	0	0	0	1	0	0	0	11601	1291	45	2	2379	2	PCDHA6	5	140210053	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	487807	140210053	40705207	1471	20321										
PCDHA7	0	genome.wustl.edu	37	chr5	140214100	140214100	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggctaaacatggcaacttCgtgggccgcatcgcgcagga	14	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140214100	140214100	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	silent	c.132	p.F44	0.997	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	58	0	0	43	14	24.56	-	-	-	T	140214100	C	T	140214100	2	4	240	1	0	0	0	0	0	0	0	1	11602	883	31	1		1	PCDHA7	5	140214100	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4047	140214100	40701160	1472	20322										
PCDHA8	0	genome.wustl.edu	37	chr5	140221355	140221355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatccagaatgccagactCtcggtttccgctagagggcg	12	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140221355	140221355	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.449	p.S150F	0.021	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	87	0	0	51	22	30.14	-	-	-	T	140221355	C	T	140221355	3	4	240	1	0	0	0	0	1	0	0	0	11603	913	32	2	451	2	PCDHA8	5	140221355	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7255	140221355	40693905	1473	20323										
PCDHA10	0	genome.wustl.edu	37	chr5	140236531	140236531	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggataaacgaaaggacgggaGaaataaaagtaaatgatgct	12	3	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140236531	140236531	G	C	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.898	p.E300Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	40	0	0	44	7	13.73	-	-	-	C	140236531	G	C	140236531	3	2	240	1	0	0	0	0	1	0	0	0	11593	943	33	2	900	2	PCDHA10	5	140236531	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15176	140236531	40678729	1474	20324										
PCDHA12	0	genome.wustl.edu	37	chr5	140256147	140256147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccctgtgcaagaggatgctCaggtgggtaccgtcattgcc	13	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140256147	140256147	C	G	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	missense	c.1090	p.Q364E	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	52	0	0	46	18	28.12	-	-	-	G	140256147	C	G	140256147	3	3	240	1	0	0	0	0	1	0	0	0	11595	827	29	2	1092	2	PCDHA12	5	140256147	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19616	140256147	40659113	1475	20325										
PCDHA12	0	genome.wustl.edu	37	chr5	140256956	140256956	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacactggcgagatcagcacGacacgcatcctggatgaggc	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140256956	140256956	G	C	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.1899	p.T633	0.351	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	73	0	0	37	10	21.28	-	-	-	C	140256956	G	C	140256956	2	2	240	1	0	0	0	0	0	0	0	1	11595	1045	37	3		3	PCDHA12	5	140256956	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	809	140256956	40658304	1476	20326										
PCDHAC1	0	genome.wustl.edu	37	chr5	140306568	140306568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcagtgccggaggagacgGagcggggcgtagccgtaggc	19	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140306568	140306568	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	0.021	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	131	0	0	67	27	28.72	-	-	-	A	140306568	G	A	140306568	3	1	240	1	0	0	0	0	1	0	0	0	11605	1175	41	2	93	2	PCDHAC1	5	140306568	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49612	140306568	40608692	1477	20327										
PCDHB3	0	genome.wustl.edu	37	chr5	140481735	140481735	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggacccgcacctgcccctctCttccctggtctccatcaacg	7	20	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140481735	140481735	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	missense	c.1502	p.S501F	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	46	0	0	42	14	25	-	-	-	T	140481735	C	T	140481735	3	4	240	1	0	0	0	0	1	0	0	0	11616	913	32	2	1504	2	PCDHB3	5	140481735	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175167	140481735	40433525	1478	20328										
PCDHB3	0	genome.wustl.edu	37	chr5	140481751	140481751	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcttccctggtctccatCaacgcggacaacggccacct	7	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140481751	140481751	C	G	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	missense	c.1518	p.I506M	0.969	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	58	0	0	35	14	28.57	-	-	-	G	140481751	C	G	140481751	3	3	240	1	0	0	0	0	1	0	0	0	11616	816	29	2	1520	2	PCDHB3	5	140481751	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16	140481751	40433509	1479	20329										
PCDHB4	0	genome.wustl.edu	37	chr5	140502768	140502768	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttattctaaaaccaactttGaagaatttttacaccctggt	4	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140502768	140502768	G	A	SNP	PCDHB4	ENST00000194152	human	ensembl	69_37n	1	known	silent	c.1188	p.L396	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	65	0	0	41	11	21.15	-	-	-	A	140502768	G	A	140502768	2	1	240	1	0	0	0	0	0	0	0	1	11617	1281	45	2		2	PCDHB4	5	140502768	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21017	140502768	40412492	1480	20330										
PCDHB5	0	genome.wustl.edu	37	chr5	140516178	140516178	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgctccatccagaatgatCtcccctttcttttgaagccc	5	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140516178	140516178	C	G	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	missense	c.1162	p.L388V	0.008	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	60	0	0	46	14	23.33	-	-	-	G	140516178	C	G	140516178	3	3	240	1	0	0	0	0	1	0	0	0	11618	913	32	2	1164	2	PCDHB5	5	140516178	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13410	140516178	40399082	1481	20331										
PCDHB7	0	genome.wustl.edu	37	chr5	140553589	140553589	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccaggacgatgtccccttCatcctgaagccatctgtcga	8	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140553589	140553589	C	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1173	p.F391L	0.110	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	50	0	0	37	14	27.45	-	-	-	A	140553589	C	A	140553589	3	1	240	1	0	0	0	0	1	0	0	0	11620	825	29	2	1175	2	PCDHB7	5	140553589	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37411	140553589	40361671	1482	20332										
PCDHB8	0	genome.wustl.edu	37	chr5	140557670	140557670	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcaagtccttttttcctttCtccttttgggcttatctctg	7	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140557670	140557670	C	G	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.55	p.L19V	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	358	0	0	285	35	10.94	-	-	-	G	140557670	C	G	140557670	3	3	240	1	0	0	0	0	1	0	0	0	11621	913	32	2	57	2	PCDHB8	5	140557670	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4081	140557670	40357590	1483	20333										
PCDHB8	0	genome.wustl.edu	37	chr5	140559780	140559780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggaggagcagggcggcctCggtgggtcgctgctcagtgc	19	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140559780	140559780	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.2165	p.S722L	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	36	0	0	22	6	21.43	-	-	-	T	140559780	C	T	140559780	3	4	240	1	0	0	0	0	1	0	0	0	11621	893	31	1	2167	1	PCDHB8	5	140559780	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2110	140559780	40355480	1484	20334										
PCDHB16	0	genome.wustl.edu	37	chr5	140562661	140562661	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctataaaatcagcccaagctCtcatttccgggttctaatcc	5	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140562661	140562661	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.527	p.S176F	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	74	0	0	37	11	22.92	-	-	-	T	140562661	C	T	140562661	3	4	240	1	0	0	0	0	1	0	0	0	11614	913	32	2	529	2	PCDHB16	5	140562661	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2881	140562661	40352599	1485	20335										
PCDHB16	0	genome.wustl.edu	37	chr5	140562819	140562819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctggaactgctcaggtcCgtattgaagtggtggacatc	13	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140562819	140562819	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.685	p.R229C	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	42	0	0	18	20	52.63	-	-	-	T	140562819	C	T	140562819	3	4	240	1	0	0	0	0	1	0	0	0	11614	652	23	1	687	1	PCDHB16	5	140562819	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	158	140562819	40352441	1486	20336										
PCDHB13	0	genome.wustl.edu	37	chr5	140593758	140593758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttttttcctttctccttttGggcttatctctggcgggcgc	9	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140593758	140593758	G	A	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	silent	c.63	p.L21	0.006	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	129	0	0	70	54	43.55	-	-	-	A	140593758	G	A	140593758	2	1	240	1	0	0	0	0	0	0	0	1	11611	1339	47	4		4	PCDHB13	5	140593758	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30939	140593758	40321502	1487	20337										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711611	140711611	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaactccccagtcttccatCaggactcctactctgcctac	4	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140711611	140711611	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	nonsense	c.1360	p.Q454*	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	94	0	0	63	23	26.74	-	-	-	T	140711611	C	T	140711611	4	4	240	1	0	0	0	0	0	1	0	0	11623	827	29	2	1362	2	PCDHGA1	5	140711611	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	117853	140711611	40203649	1488	20338										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711667	140711667	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagaggagcctccatcttCtctgtgagggcccacgactt	10	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140711667	140711667	C	G	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.1416	p.F472L	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	80	0	0	61	18	22.78	-	-	-	G	140711667	C	G	140711667	3	3	240	1	0	0	0	0	1	0	0	0	11623	912	32	2	1418	2	PCDHGA1	5	140711667	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	56	140711667	40203593	1489	20339										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712155	140712155	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgcgagccctgctggacaGagacgcgctcaagcagagtc	15	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140712155	140712155	G	C	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.1904	p.R635T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	34	0	0	18	11	37.93	-	-	-	C	140712155	G	C	140712155	3	2	240	1	0	0	0	0	1	0	0	0	11623	942	33	2	1906	2	PCDHGA1	5	140712155	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	488	140712155	40203105	1490	20340										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712450	140712450	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcgggaggcggcttagcGagcatgcccggttcgcactt	15	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140712450	140712450	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	silent	c.2199	p.A733	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	98	0	0	66	14	17.5	-	-	-	A	140712450	G	A	140712450	2	1	240	1	0	0	0	0	0	0	0	1	11623	1045	37	1		1	PCDHGA1	5	140712450	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	295	140712450	40202810	1491	20341										
PCDHGB1	0	genome.wustl.edu	37	chr5	140730773	140730773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagatatgtgttgagtgtgGaagctaaggatggaggagta	17	1	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140730773	140730773	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.946	p.E316K	0.940	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	63	0	0	42	9	17.65	-	-	-	A	140730773	G	A	140730773	3	1	240	1	0	0	0	0	1	0	0	0	11635	1175	41	2	948	2	PCDHGB1	5	140730773	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18323	140730773	40184487	1492	20342										
PCDHGB1	0	genome.wustl.edu	37	chr5	140732107	140732107	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcattctgcaaagacagaGtttaattctctcaacctgac	5	11	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140732107	140732107	G	C	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.2280	p.E760D	0.785	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	68	0	0	32	32	50	-	-	-	C	140732107	G	C	140732107	3	2	240	1	0	0	0	0	1	0	0	0	11635	1020	36	4	2282	4	PCDHGB1	5	140732107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1334	140732107	40183153	1493	20343										
PCDHGA4	0	genome.wustl.edu	37	chr5	140735109	140735109	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcttctagaagatacagtGaagattttgcgggtagaggt	12	4	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140735109	140735109	G	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	silent	c.342	p.V114	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	67	0	0	49	16	24.62	-	-	-	T	140735109	G	T	140735109	2	4	240	1	0	0	0	0	0	0	0	1	11629	1277	45	2		2	PCDHGA4	5	140735109	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3002	140735109	40180151	1494	20344										
PCDHGA7	0	genome.wustl.edu	37	chr5	140762875	140762875	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaagattcttgacggaaGaaataaatgtaaaaataatg	7	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140762875	140762875	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	0.984	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	45	0	0	24	20	45.45	-	-	-	A	140762875	G	A	140762875	3	1	240	1	0	0	0	0	1	0	0	0	11632	943	33	2	411	2	PCDHGA7	5	140762875	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27766	140762875	40152385	1495	20345										
PCDHGA7	0	genome.wustl.edu	37	chr5	140763855	140763855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactcagtctacatcgctgaGaacaaccccagaggggcctc	9	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140763855	140763855	G	C	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	missense	c.1389	p.E463D	0.997	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	58	0	0	50	12	19.35	-	-	-	C	140763855	G	C	140763855	3	2	240	1	0	0	0	0	1	0	0	0	11632	933	33	2	1391	2	PCDHGA7	5	140763855	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	980	140763855	40151405	1496	20346										
PCDHGB4	0	genome.wustl.edu	37	chr5	140768028	140768028	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatggcagtaaataccctGagatggtattgaagacacct	10	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140768028	140768028	G	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	nonsense	c.577	p.E193*	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	23	0	0	15	8	34.78	-	-	-	T	140768028	G	T	140768028	4	4	240	1	0	0	0	0	0	1	0	0	11638	1291	45	2	579	2	PCDHGB4	5	140768028	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4173	140768028	40147232	1497	20347										
PCDHGB4	0	genome.wustl.edu	37	chr5	140768279	140768279	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgagggtgtcaatgccgaGattactttctctttcagtga	11	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140768279	140768279	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.828	p.E276	0.890	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	47	0	0	45	15	25	-	-	-	A	140768279	G	A	140768279	2	1	240	1	0	0	0	0	0	0	0	1	11638	933	33	2		2	PCDHGB4	5	140768279	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	251	140768279	40146981	1498	20348										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769359	140769359	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaggcgacagggacgccgtCcgccagcgccttctggtcgc	14	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140769359	140769359	C	G	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.1908	p.V636	0.026	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	33	0	0	30	17	36.17	-	-	-	G	140769359	C	G	140769359	2	3	240	1	0	0	0	0	0	0	0	1	11638	842	30	2		2	PCDHGB4	5	140769359	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1080	140769359	40145901	1499	20349										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769441	140769441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttgcacctggtcttcgccGacagcttgcaggaggtgctg	14	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140769441	140769441	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.1990	p.D664N	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	69	0	0	63	20	24.1	-	-	-	A	140769441	G	A	140769441	3	1	240	1	0	0	0	0	1	0	0	0	11638	1058	37	1	1992	1	PCDHGB4	5	140769441	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82	140769441	40145819	1500	20350										
PCDHGA9	0	genome.wustl.edu	37	chr5	140784179	140784179	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgagactgtttgttttgGaccagaatgacaatgcccca	9	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140784179	140784179	G	C	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	missense	c.1660	p.D554H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	55	0	0	51	12	19.05	-	-	-	C	140784179	G	C	140784179	3	2	240	1	0	0	0	0	1	0	0	0	11634	1174	41	2	1662	2	PCDHGA9	5	140784179	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14738	140784179	40131081	1501	20351										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789976	140789976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtctctgtgtcaagtctgGacctgtagttccccccaact	9	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140789976	140789976	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.2207	p.G736E	0.283	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	130	0	0	109	28	20.44	-	-	-	A	140789976	G	A	140789976	3	1	240	1	0	0	0	0	1	0	0	0	11640	1174	41	2	2209	2	PCDHGB6	5	140789976	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5797	140789976	40125284	1502	20352										
PCDHGA12	0	genome.wustl.edu	37	chr5	140812361	140812361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcggacctcggcagcctcGagtctccagctaactctgaa	11	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140812361	140812361	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	missense	c.2035	p.E679K	0.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	55	0	0	31	23	42.59	-	-	-	A	140812361	G	A	140812361	3	1	240	1	0	0	0	0	1	0	0	0	11626	1059	37	1	2037	1	PCDHGA12	5	140812361	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22385	140812361	40102899	1503	20353										
PCDHGC5	0	genome.wustl.edu	37	chr5	140869185	140869185	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggtagagatcctggatctCaatgacaactctcctagctt	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140869185	140869185	C	T	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	silent	c.378	p.L126	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	33	0	0	36	14	28	-	-	-	T	140869185	C	T	140869185	2	4	240	1	0	0	0	0	0	0	0	1	11644	813	29	2		2	PCDHGC5	5	140869185	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	56824	140869185	40046075	1504	20354										
PCDHGC5	0	genome.wustl.edu	37	chr5	140890725	140890725	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaagaagaagtcgggcaaGaaggagaagaagtaacatgg	14	4	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	140890725	140890725	G	A	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	silent	c.2820	p.K940	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	41	0	0	33	9	21.43	-	-	-	A	140890725	G	A	140890725	2	1	240	1	0	0	0	0	0	0	0	1	11644	933	33	2		2	PCDHGC5	5	140890725	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21540	140890725	40024535	1505	20355										
FCHSD1	0	genome.wustl.edu	37	chr5	141025748	141025748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgccgcctctgctccagtCgttgcagtacctggttggga	13	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	141025748	141025748	C	T	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	missense	c.1055	p.R352Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	77	0	0	46	43	48.31	-	-	-	T	141025748	C	T	141025748	3	4	240	1	0	0	0	0	1	0	0	0	5835	884	31	1	1053	1	FCHSD1	5	141025748	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	135023	141025748	39889512	1506	20356										
PCDH1	0	genome.wustl.edu	37	chr5	141248316	141248316	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcataggagtcccagcgctCacggtccaggttgcccatca	11	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	141248316	141248316	C	T	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	missense	c.721	p.E241K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	90	0	0	74	26	26	-	-	-	T	141248316	C	T	141248316	3	4	240	1	0	0	0	0	1	0	0	0	11579	835	29	2	3092	2	PCDH1	5	141248316	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	222568	141248316	39666944	1507	20357										
RNF14	0	genome.wustl.edu	37	chr5	141354446	141354446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccacttgtgctgaactttGaactgccaccagattatcca	6	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	141354446	141354446	G	C	SNP	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	missense	c.232	p.E78Q	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	162	0	0	113	38	25.17	-	-	-	C	141354446	G	C	141354446	3	2	240	1	0	0	0	0	1	0	0	0	13529	1291	45	2	238	2	RNF14	5	141354446	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106130	141354446	39560814	1508	20358										
LARS	0	genome.wustl.edu	37	chr5	145524057	145524057	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaggttcttcaagcactGagatgtctgtttcttccaat	7	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	145524057	145524057	G	T	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	missense	c.1633	p.Q545K	0.989	pfam_aa-tRNA-synth_Ia,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	288	0	0	159	64	28.7	-	-	-	T	145524057	G	T	145524057	3	4	240	1	0	0	0	0	1	0	0	0	8688	1299	45	2	1961	2	LARS	5	145524057	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4169611	145524057	35391203	1509	20359										
LARS	0	genome.wustl.edu	37	chr5	145543935	145543935	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaataatcaagccaatgttCtgcttcagaaaattttacta	5	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	145543935	145543935	C	G	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	missense	c.532	p.E178Q	1.000	tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	80	0	0	50	27	35.06	-	-	-	G	145543935	C	G	145543935	3	3	240	1	0	0	0	0	1	0	0	0	8688	922	32	2	3106	2	LARS	5	145543935	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19878	145543935	35371325	1510	20360										
DPYSL3	0	genome.wustl.edu	37	chr5	146780345	146780345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtccttcccaattgctttCtgggcagtgctgaaggtgca	11	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	146780345	146780345	C	T	SNP	DPYSL3	ENST00000520473	human	ensembl	69_37n	-1	novel	missense	c.115	p.E39K	1.000	pfam_Amidohydro_1	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DPYSL3	HGNC	ENSG00000113657	127	0	0	116	41	26.11	-	-	-	T	146780345	C	T	146780345	3	4	240	1	0	0	0	0	1	0	0	0	4783	912	32	2	712	2	DPYSL3	5	146780345	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1236410	146780345	34134915	1511	20361										
DPYSL3	0	genome.wustl.edu	37	chr5	146798120	146798120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtatggacatcgatgcctCcagggatcaccatcttccca	9	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	146798120	146798120	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	missense	c.203	p.G68E	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	85	0	0	85	24	21.82	-	-	-	T	146798120	C	T	146798120	3	4	240	1	0	0	0	0	1	0	0	0	4783	855	30	2	1557	2	DPYSL3	5	146798120	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17775	146798120	34117140	1512	20362										
AFAP1L1	0	genome.wustl.edu	37	chr5	148712258	148712258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaatgtctcttgattcagGagcaaaattaaaggctctgg	9	7	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	148712258	148712258	G	A	SNP	AFAP1L1	ENST00000296721	human	ensembl	69_37n	1	known	missense	c.1976	p.G659E	0.996	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510	26	0	0	28	9	24.32	-	-	-	A	148712258	G	A	148712258	3	1	240	1	0	0	0	0	1	0	0	0	354	1188	41	2	2042	2	AFAP1L1	5	148712258	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1914138	148712258	32203002	1513	20363										
CSNK1A1	0	genome.wustl.edu	37	chr5	148929690	148929690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatcttatagagcttgctctCgtacagcaactggggatgcc	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	148929690	148929690	C	T	SNP	CSNK1A1	ENST00000515768	human	ensembl	69_37n	-1	known	missense	c.178	p.E60K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1	HGNC	ENSG00000113712	61	0	0	57	15	20.83	-	-	-	T	148929690	C	T	148929690	3	4	240	1	0	0	0	0	1	0	0	0	3982	893	31	1	959	1	CSNK1A1	5	148929690	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	217432	148929690	31985570	1514	20364										
PPARGC1B	0	genome.wustl.edu	37	chr5	149206235	149206235	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccgccctcctcactccaGattgacagtgagaatgaggc	9	15	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149206235	149206235	G	C	SNP	PPARGC1B	ENST00000309241	human	ensembl	69_37n	1	known	splice_site	c.253-1	e3-1	1.000	-	-	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	11	0	0	21	12	36.36	-	-	-	C	149206235	G	C	149206235	5	2	240	1	0	0	0	0	0	0	1	0	12374	956	33	2	269	2	PPARGC1B	5	149206235	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	276545	149206235	31709025	1515	20365										
PDE6A	0	genome.wustl.edu	37	chr5	149247712	149247712	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagatcacaggcggtcatCatcatggccctgggcacaca	12	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149247712	149247712	C	T	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	missense	c.2145	p.M715I	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	66	0	0	65	19	22.62	-	-	-	T	149247712	C	T	149247712	3	4	240	1	0	0	0	0	1	0	0	0	11718	826	29	2	457	2	PDE6A	5	149247712	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41477	149247712	31667548	1516	20366										
PDE6A	0	genome.wustl.edu	37	chr5	149323885	149323885	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagtcctcgaggacagcatCcttgtggacattgaaaagcc	11	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149323885	149323885	C	G	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	missense	c.352	p.D118H	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	52	0	0	47	17	26.56	-	-	-	G	149323885	C	G	149323885	3	3	240	1	0	0	0	0	1	0	0	0	11718	855	30	2	2318	2	PDE6A	5	149323885	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76173	149323885	31591375	1517	20367										
CSF1R	0	genome.wustl.edu	37	chr5	149449523	149449523	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggttgtgctctaaggtctCaacagtcagcaggctctgca	11	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149449523	149449523	C	G	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475Q	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	CSF1R	HGNC	ENSG00000182578	59	0	0	60	18	23.08	-	-	-	G	149449523	C	G	149449523	3	3	240	1	0	0	0	0	1	0	0	0	3964	835	29	2	1547	2	CSF1R	5	149449523	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	125638	149449523	31465737	1518	20368										
CAMK2A	0	genome.wustl.edu	37	chr5	149633106	149633106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggccagcaacagattctCaggcttgtcaggaccagaga	13	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149633106	149633106	C	T	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	missense	c.415	p.E139K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	46	0	0	49	13	20.97	-	-	-	T	149633106	C	T	149633106	3	4	240	1	0	0	0	0	1	0	0	0	2624	835	29	2	1106	2	CAMK2A	5	149633106	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	183583	149633106	31282154	1519	20369										
TCOF1	0	genome.wustl.edu	37	chr5	149771697	149771697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcttcagggagtgaggaaGatggtgaagggccccagggg	19	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149771697	149771697	G	C	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	missense	c.3586	p.D1196H	0.003	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	45	0	0	25	23	47.92	-	-	-	C	149771697	G	C	149771697	3	2	240	1	0	0	0	0	1	0	0	0	15803	942	33	2	3579	2	TCOF1	5	149771697	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	138591	149771697	31143563	1520	20370										
NDST1	0	genome.wustl.edu	37	chr5	149932856	149932856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataagatgggccagacacttCccacttggctacgagaggac	11	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	149932856	149932856	C	T	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	missense	c.2611	p.P871S	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	33	0	0	36	18	33.33	-	-	-	T	149932856	C	T	149932856	3	4	240	1	0	0	0	0	1	0	0	0	10327	855	30	2	2665	2	NDST1	5	149932856	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	161159	149932856	30982404	1521	20371										
MYOZ3	0	genome.wustl.edu	37	chr5	150051169	150051169	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgttcccagatgctggccgGaagcgccaggaggaaggtga	16	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150051169	150051169	G	C	SNP	MYOZ3	ENST00000297130	human	ensembl	69_37n	1	known	missense	c.227	p.G76A	0.028	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ3	HGNC	ENSG00000164591	43	0	0	23	12	34.29	-	-	-	C	150051169	G	C	150051169	3	2	240	1	0	0	0	0	1	0	0	0	10169	1174	41	2	237	2	MYOZ3	5	150051169	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	118313	150051169	30864091	1522	20372										
ZNF300	0	genome.wustl.edu	37	chr5	150276209	150276209	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataacaactcggtaggtcaaTatttggttttaagttctttt	7	5	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150276209	150276209	T	A	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.640	p.I214F	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	82	0	0	62	20	24.39	-	-	-	A	150276209	T	A	150276209	3	1	240	1	0	0	0	0	1	0	0	0	17927	1406	49	5	1226	5	ZNF300	5	150276209	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	225040	150276209	30639051	1523	20373										
SLC36A1	0	genome.wustl.edu	37	chr5	150843174	150843174	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcacaggactcctgggactCcctctggcggtgaaaaatgc	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150843174	150843174	C	T	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	silent	c.204	p.L68	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	87	0	0	69	29	29.59	-	-	-	T	150843174	C	T	150843174	2	4	240	1	0	0	0	0	0	0	0	1	14682	842	30	2		2	SLC36A1	5	150843174	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	566965	150843174	30072086	1524	20374										
FAT2	0	genome.wustl.edu	37	chr5	150906915	150906915	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccactgtctgtggctcgGagcttcagggaataactaga	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150906915	150906915	G	C	SNP	FAT2	ENST00000520200	human	ensembl	69_37n	-1	novel	missense	c.763	p.P255A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Cadherin,prints_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAT2	HGNC	ENSG00000086570	81	0	0	36	16	30.77	-	-	-	C	150906915	G	C	150906915	3	2	240	1	0	0	0	0	1	0	0	0	5736	1161	41	2	2893	2	FAT2	5	150906915	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	63741	150906915	30008345	1525	20375										
FAT2	0	genome.wustl.edu	37	chr5	150923332	150923332	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatcagaagcacctaccctCaaattgtaagaagagtccag	7	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150923332	150923332	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.7356	p.L2452F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	62	0	0	50	10	16.67	-	-	-	G	150923332	C	G	150923332	3	3	240	1	0	0	0	0	1	0	0	0	5736	825	29	2	5753	2	FAT2	5	150923332	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16417	150923332	29991928	1526	20376										
FAT2	0	genome.wustl.edu	37	chr5	150924801	150924801	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaaactgcaagcttttgtCaagcacttgggtcaaagaaa	8	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150924801	150924801	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.5887	p.D1963H	0.000	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	48	0	0	54	17	23.94	-	-	-	G	150924801	C	G	150924801	3	3	240	1	0	0	0	0	1	0	0	0	5736	826	29	2	7222	2	FAT2	5	150924801	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1469	150924801	29990459	1527	20377										
FAT2	0	genome.wustl.edu	37	chr5	150946695	150946695	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcattgcctgatacaatctCgtattttaggttctgaagct	7	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150946695	150946695	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.1798	p.E600Q	0.481	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	73	0	0	61	15	19.74	-	-	-	G	150946695	C	G	150946695	3	3	240	1	0	0	0	0	1	0	0	0	5736	893	31	3	11343	3	FAT2	5	150946695	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21894	150946695	29968565	1528	20378										
FAT2	0	genome.wustl.edu	37	chr5	150946913	150946913	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacccggaaggtataaattCttttcatgagttcatagtcc	7	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	150946913	150946913	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.1580	p.R527T	0.926	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	40	0	0	34	11	24.44	-	-	-	G	150946913	C	G	150946913	3	3	240	1	0	0	0	0	1	0	0	0	5736	913	32	2	11561	2	FAT2	5	150946913	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	218	150946913	29968347	1529	20379										
SPARC	0	genome.wustl.edu	37	chr5	151045926	151045926	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtctggggtcttacccgtCaatggggtgctggtccagct	16	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	151045926	151045926	C	T	SNP	SPARC	ENST00000231061	human	ensembl	69_37n	-1	known	missense	c.730	p.D244N	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	SPARC	HGNC	ENSG00000113140	64	0	0	50	13	20.63	-	-	-	T	151045926	C	T	151045926	3	4	240	1	0	0	0	0	1	0	0	0	15086	826	29	2	193	2	SPARC	5	151045926	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	99013	151045926	29869334	1530	20380										
NMUR2	0	genome.wustl.edu	37	chr5	151771983	151771983	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaaagaagagatcacattCtggaatgctgcctggaagcg	13	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	151771983	151771983	C	T	SNP	NMUR2	ENST00000255262	human	ensembl	69_37n	-1	known	silent	c.1017	p.Q339	0.539	pfam_7TM_GPCR_olfarory/Srsx	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911	60	0	0	49	10	16.95	-	-	-	T	151771983	C	T	151771983	2	4	240	1	0	0	0	0	0	0	0	1	10579	912	32	2		2	NMUR2	5	151771983	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	726057	151771983	29143277	1531	20381										
GRIA1	0	genome.wustl.edu	37	chr5	153085554	153085554	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaccagtgaccagtccaatGagtttgggatattcaacagt	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	153085554	153085554	G	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	nonsense	c.1780	p.E594*	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	123	0	0	102	21	16.94	-	-	-	T	153085554	G	T	153085554	4	4	240	1	0	0	0	0	0	1	0	0	6818	1291	45	2	1792	2	GRIA1	5	153085554	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1313571	153085554	27829706	1532	20382										
GALNT10	0	genome.wustl.edu	37	chr5	153765877	153765877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttcttctctgacaggtctCccgtgatggccggtggactg	12	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	153765877	153765877	C	T	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	1	known	missense	c.943	p.P315S	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	109	0	0	76	16	17.2	-	-	-	T	153765877	C	T	153765877	3	4	240	1	0	0	0	0	1	0	0	0	6258	855	30	2	969	2	GALNT10	5	153765877	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	680323	153765877	27149383	1533	20383										
HAND1	0	genome.wustl.edu	37	chr5	153855390	153855390	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtttaactccagcgcccaGacttgctgcggccagccggt	12	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	153855390	153855390	G	C	SNP	HAND1	ENST00000231121	human	ensembl	69_37n	-1	known	silent	c.624	p.V208	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	HAND1	HGNC	ENSG00000113196	16	0	0	20	8	28.57	-	-	-	C	153855390	G	C	153855390	2	2	240	1	0	0	0	0	0	0	0	1	7000	929	33	2		2	HAND1	5	153855390	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	89513	153855390	27059870	1534	20384										
LARP1	0	genome.wustl.edu	37	chr5	154172346	154172346	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattgccagcgaggcgggcaGaagaagaaaggtgagtgact	17	6	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	154172346	154172346	G	C	SNP	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	missense	c.498	p.Q166H	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	93	0	0	65	41	38.68	-	-	-	C	154172346	G	C	154172346	3	2	240	1	0	0	0	0	1	0	0	0	8682	933	33	2	512	2	LARP1	5	154172346	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	316956	154172346	26742914	1535	20385										
SGCD	0	genome.wustl.edu	37	chr5	155935695	155935695	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaacctctctacgccaaaGaaatccagtcccgaccagta	5	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	155935695	155935695	G	C	SNP	SGCD	ENST00000337851	human	ensembl	69_37n	1	known	missense	c.277	p.E93Q	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	102	0	0	59	14	19.18	-	-	-	C	155935695	G	C	155935695	3	2	240	1	0	0	0	0	1	0	0	0	14289	943	33	2	287	2	SGCD	5	155935695	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1763349	155935695	24979565	1536	20386										
SOX30	0	genome.wustl.edu	37	chr5	157078252	157078252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttatcagctctgaaggcgGagctccctgaaactggatcc	10	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	157078252	157078252	G	A	SNP	SOX30	ENST00000265007	human	ensembl	69_37n	-1	known	missense	c.835	p.P279S	0.997	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX30	HGNC	ENSG00000039600	52	0	0	35	17	32.69	-	-	-	A	157078252	G	A	157078252	3	1	240	1	0	0	0	0	1	0	0	0	15041	1174	41	2	1446	2	SOX30	5	157078252	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1142557	157078252	23837008	1537	20387										
RNF145	0	genome.wustl.edu	37	chr5	158601064	158601064	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgaaataggagtaaatctGaagagcaaataagacgagcc	10	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	158601064	158601064	G	A	SNP	RNF145	ENST00000274542	human	ensembl	69_37n	-1	known	nonsense	c.808	p.Q270*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860	60	0	0	23	23	50	-	-	-	A	158601064	G	A	158601064	4	1	240	1	0	0	0	0	0	1	0	0	13533	1299	45	2	1291	2	RNF145	5	158601064	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1522812	158601064	22314196	1538	20388										
IL12B	0	genome.wustl.edu	37	chr5	158743780	158743780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaatgctggcatttttgcgGcagatgaccgtggctgaggt	14	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	158743780	158743780	G	A	SNP	IL12B	ENST00000231228	human	ensembl	69_37n	-1	known	silent	c.900	p.C300	0.961	pirsf_IL_12_beta,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL_12_beta,pfam_Interleukin-12_bsu_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL_12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL12B	HGNC	ENSG00000113302	39	0	0	50	15	23.08	-	-	-	A	158743780	G	A	158743780	2	1	240	1	0	0	0	0	0	0	0	1	7679	1195	42	4		4	IL12B	5	158743780	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	142716	158743780	22171480	1539	20389										
GABRB2	0	genome.wustl.edu	37	chr5	160758051	160758051	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaccccatcaggtacatgtCaatggccttcacatagggga	10	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	160758051	160758051	C	A	SNP	GABRB2	ENST00000274547	human	ensembl	69_37n	-1	known	missense	c.916	p.D306Y	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	152	0	0	56	78	57.78	-	-	-	A	160758051	C	A	160758051	3	1	240	1	0	0	0	0	1	0	0	0	6216	826	29	2	634	2	GABRB2	5	160758051	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2014271	160758051	20157209	1540	20390										
GABRA6	0	genome.wustl.edu	37	chr5	161119195	161119195	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctactgaacctttggaagctGagattgttttggtaattgtt	10	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	161119195	161119195	G	A	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	missense	c.1075	p.E359K	0.999	superfamily_Neurotrans-gated_channel_TM,prints_GABBAa6_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	119	0	0	100	27	21.26	-	-	-	A	161119195	G	A	161119195	3	1	240	1	0	0	0	0	1	0	0	0	6214	1291	45	2	1105	2	GABRA6	5	161119195	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	361144	161119195	19796065	1541	20391										
HMMR	0	genome.wustl.edu	37	chr5	162910044	162910044	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatgcttctagatctgcaGaccaagtcagcactaaagga	10	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	162910044	162910044	G	C	SNP	HMMR	ENST00000393915	human	ensembl	69_37n	1	known	missense	c.1551	p.Q517H	0.988	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571	17	0	0	24	5	17.24	-	-	-	C	162910044	G	C	162910044	3	2	240	1	0	0	0	0	1	0	0	0	7293	933	33	2	1605	2	HMMR	5	162910044	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1790849	162910044	18005216	1542	20392										
WWC1	0	genome.wustl.edu	37	chr5	167871546	167871546	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagcagtggagctggagaaGaggcaggagggcaggagcag	20	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	167871546	167871546	G	C	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.2481	p.K827N	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	35	0	0	25	8	24.24	-	-	-	C	167871546	G	C	167871546	3	2	240	1	0	0	0	0	1	0	0	0	17508	933	33	2	2547	2	WWC1	5	167871546	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4961502	167871546	13043714	1543	20393										
DOCK2	0	genome.wustl.edu	37	chr5	169143298	169143298	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatatgacatcctcgtctttGatgccttggtaagagagagg	11	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	169143298	169143298	G	T	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.2023	p.D675Y	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	92	0	0	52	11	17.46	-	-	-	T	169143298	G	T	169143298	3	4	240	1	0	0	0	0	1	0	0	0	4722	1290	45	2	2101	2	DOCK2	5	169143298	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1271752	169143298	11771962	1544	20394										
DOCK2	0	genome.wustl.edu	37	chr5	169508884	169508884	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggcatccctgggttggatGaggccaacacatctccccgc	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	169508884	169508884	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.5326	p.E1776K	0.145	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	49	0	0	49	21	30	-	-	-	A	169508884	G	A	169508884	3	1	240	1	0	0	0	0	1	0	0	0	4722	1291	45	2	5528	2	DOCK2	5	169508884	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	365586	169508884	11406376	1545	20395										
FGF18	0	genome.wustl.edu	37	chr5	170883686	170883686	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagggccccaagacccgggaGaaccagcaggacgtgcattt	13	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	170883686	170883686	G	A	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	silent	c.501	p.E167	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	33	0	0	18	9	33.33	-	-	-	A	170883686	G	A	170883686	2	1	240	1	0	0	0	0	0	0	0	1	5892	933	33	2		2	FGF18	5	170883686	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1374802	170883686	10031574	1546	20396										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171774304	171774304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaatggtcatgtcccggcGaggagggggtctctgcctca	14	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	171774304	171774304	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.1045	p.R349C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	68	0	0	42	9	17.65	-	-	-	A	171774304	G	A	171774304	3	1	240	1	0	0	0	0	1	0	0	0	14346	1058	37	1	1702	1	SH3PXD2B	5	171774304	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	890618	171774304	9140956	1547	20397										
CPEB4	0	genome.wustl.edu	37	chr5	173380155	173380155	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctacgctgggattgatacCgaccctgagctaaaataccc	9	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	173380155	173380155	C	T	SNP	CPEB4	ENST00000265085	human	ensembl	69_37n	1	known	silent	c.1842	p.T614	0.014	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742	122	0	0	73	20	21.51	-	-	-	T	173380155	C	T	173380155	2	4	240	1	0	0	0	0	0	0	0	1	3833	639	23	1		1	CPEB4	5	173380155	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1605851	173380155	7535105	1548	20398										
C5orf25	0	genome.wustl.edu	37	chr5	175717603	175717603	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaggggacgtgacacactCacctagagacatccctcact	8	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	175717603	175717603	C	T	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.1019	p.S340L	0.010	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	72	0	0	85	11	11.46	-	-	-	T	175717603	C	T	175717603	3	4	240	1	0	0	0	0	1	0	0	0	2309	841	29	2		2	C5orf25	5	175717603	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2337448	175717603	5197657	1549	20399										
HIGD2A	0	genome.wustl.edu	37	chr5	175816403	175816403	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggcaacagccagcgctctCagctcatgatgcgcacccgg	13	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	175816403	175816403	C	T	SNP	HIGD2A	ENST00000274787	human	ensembl	69_37n	1	known	nonsense	c.226	p.Q76*	1.000	pfam_Hypoxia_induced_domain	pfam_Hypoxia_induced_domain	-	no_errors	HIGD2A	HGNC	ENSG00000146066	32	0	0	22	6	21.43	-	-	-	T	175816403	C	T	175816403	4	4	240	1	0	0	0	0	0	1	0	0	7160	827	29	2	232	2	HIGD2A	5	175816403	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98800	175816403	5098857	1550	20400										
NSD1	0	genome.wustl.edu	37	chr5	176562130	176562130	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagacctgtgaactacccaGaagaaattgtctgctgccct	8	12	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	176562130	176562130	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.26	p.R9K	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	38	0	0	16	32	66.67	-	-	-	A	176562130	G	A	176562130	3	1	240	1	0	0	0	0	1	0	0	0	10742	942	33	2	28	2	NSD1	5	176562130	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	745727	176562130	4353130	1551	20401										
NSD1	0	genome.wustl.edu	37	chr5	176678835	176678835	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccaagaggaaaatttatCtgcaatgaatgtcgcacagg	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	176678835	176678835	C	G	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.4746	p.I1582M	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	125	0	0	84	28	25	-	-	-	G	176678835	C	G	176678835	3	3	240	1	0	0	0	0	1	0	0	0	10742	903	32	2	4788	2	NSD1	5	176678835	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	116705	176678835	4236425	1552	20402										
PRELID1	0	genome.wustl.edu	37	chr5	176733425	176733425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgccgttcgcgacaggcGaggccccttccaaaacactt	9	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	176733425	176733425	G	A	SNP	PRELID1	ENST00000303204	human	ensembl	69_37n	1	known	missense	c.514	p.E172K	1.000	pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	-	no_errors	PRELID1	HGNC	ENSG00000169230	47	0	0	28	7	20	-	-	-	A	176733425	G	A	176733425	3	1	240	1	0	0	0	0	1	0	0	0	12552	1059	37	1	532	1	PRELID1	5	176733425	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	54590	176733425	4181835	1553	20403										
PRR7	0	genome.wustl.edu	37	chr5	176882158	176882158	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgtcctgctctgctgcttCtgcagcttcctgcgccgccg	10	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	176882158	176882158	C	T	SNP	PRR7	ENST00000323249	human	ensembl	69_37n	1	known	silent	c.90	p.F30	1.000	pfam_Uncharacterised_WW-bd	pfam_Uncharacterised_WW-bd	-	no_errors	PRR7	HGNC	ENSG00000131188	28	0	0	9	4	30.77	-	-	-	T	176882158	C	T	176882158	2	4	240	1	0	0	0	0	0	0	0	1	12683	912	32	2		2	PRR7	5	176882158	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148733	176882158	4033102	1554	20404										
PDLIM7	0	genome.wustl.edu	37	chr5	176910978	176910978	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcgtgccaaacatcttctCatagtctgagaatgggggca	10	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	176910978	176910978	C	G	SNP	PDLIM7	ENST00000355841	human	ensembl	69_37n	-1	known	missense	c.1177	p.E393Q	1.000	pfam_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923	49	0	0	45	18	28.57	-	-	-	G	176910978	C	G	176910978	3	3	240	1	0	0	0	0	1	0	0	0	11757	835	29	2	204	2	PDLIM7	5	176910978	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28820	176910978	4004282	1555	20405										
CLK4	0	genome.wustl.edu	37	chr5	178044393	178044393	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagatcaggtgaccctcctCatcatcctctatactcctgg	6	15	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	178044393	178044393	C	A	SNP	CLK4	ENST00000316308	human	ensembl	69_37n	-1	known	nonsense	c.427	p.E143*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK4	HGNC	ENSG00000113240	137	0	0	95	25	20.83	-	-	-	A	178044393	C	A	178044393	4	1	240	1	0	0	0	0	0	1	0	0	3569	835	29	2	1058	2	CLK4	5	178044393	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1133415	178044393	2870867	1556	20406										
ZNF454	0	genome.wustl.edu	37	chr5	178392175	178392175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggccttctcagtgagctCctcacttacgtaccatcaga	7	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	178392175	178392175	C	A	SNP	ZNF454	ENST00000320129	human	ensembl	69_37n	1	known	missense	c.770	p.S257Y	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	50	0	0	25	9	26.47	-	-	-	A	178392175	C	A	178392175	3	1	240	1	0	0	0	0	1	0	0	0	18019	855	30	2	784	2	ZNF454	5	178392175	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	347782	178392175	2523085	1557	20407										
ZNF454	0	genome.wustl.edu	37	chr5	178392438	178392438	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagagtacaagtttccttCagcatcagagaattcacact	6	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	178392438	178392438	C	T	SNP	ZNF454	ENST00000320129	human	ensembl	69_37n	1	known	nonsense	c.1033	p.Q345*	0.020	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	69	0	0	37	27	42.19	-	-	-	T	178392438	C	T	178392438	4	4	240	1	0	0	0	0	0	1	0	0	18019	827	29	2	1047	2	ZNF454	5	178392438	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	263	178392438	2522822	1558	20408										
HNRNPH1	0	genome.wustl.edu	37	chr5	179043940	179043940	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgctgtagaattcaagaaGagttctacatatctgtgttc	8	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179043940	179043940	G	A	SNP	HNRNPH1	ENST00000523449	human	ensembl	69_37n	-1	putative	missense	c.139	p.L47F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HNRNPH1	HGNC	ENSG00000169045	127	0	0	90	29	24.37	-	-	-	A	179043940	G	A	179043940	3	1	240	1	0	0	0	0	1	0	0	0	7317	929	33	2	224	2	HNRNPH1	5	179043940	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	651502	179043940	1871320	1559	20409										
MGAT4B	0	genome.wustl.edu	37	chr5	179226238	179226238	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgccagccagcgaggagtGagtgcccacgtgctggaaga	15	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179226238	179226238	G	A	SNP	MGAT4B	ENST00000337755	human	ensembl	69_37n	-1	known	missense	c.1159	p.H387Y	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013	62	0	0	69	21	23.33	-	-	-	A	179226238	G	A	179226238	3	1	240	1	0	0	0	0	1	0	0	0	9617	1290	45	2	556	2	MGAT4B	5	179226238	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	182298	179226238	1689022	1560	20410										
C5orf45	0	genome.wustl.edu	37	chr5	179264713	179264713	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtccacatgtgaactttttCtaggtggcaggacaaattgc	10	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179264713	179264713	C	G	SNP	C5orf45	ENST00000292586	human	ensembl	69_37n	-1	known	missense	c.710	p.R237T	0.000	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	70	0	0	62	17	21.52	-	-	-	G	179264713	C	G	179264713	3	3	240	1	0	0	0	0	1	0	0	0	2325	913	32	2	325	2	C5orf45	5	179264713	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38475	179264713	1650547	1561	20411										
RASGEF1C	0	genome.wustl.edu	37	chr5	179529117	179529117	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttggttctctgggctctCactttcgtaagaagccaaat	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179529117	179529117	C	T	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444K	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	142	0	0	89	35	28.23	-	-	-	T	179529117	C	T	179529117	3	4	240	1	0	0	0	0	1	0	0	0	13154	835	29	2	78	2	RASGEF1C	5	179529117	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	264404	179529117	1386143	1562	20412										
GFPT2	0	genome.wustl.edu	37	chr5	179757747	179757747	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttgaaaacgtaatgtcctCagtttctctgttgtcgaaca	8	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179757747	179757747	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.487	p.E163K	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	193	0	0	123	48	28.07	-	-	-	T	179757747	C	T	179757747	3	4	240	1	0	0	0	0	1	0	0	0	6398	835	29	2	1617	2	GFPT2	5	179757747	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	228630	179757747	1157513	1563	20413										
CNOT6	0	genome.wustl.edu	37	chr5	179996148	179996148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacagaaaaacaacttattCttgtggctaacgcccacatg	7	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179996148	179996148	C	G	SNP	CNOT6	ENST00000261951	human	ensembl	69_37n	1	known	missense	c.1066	p.L356V	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300	49	0	0	40	12	23.08	-	-	-	G	179996148	C	G	179996148	3	3	240	1	0	0	0	0	1	0	0	0	3652	913	32	2	1100	2	CNOT6	5	179996148	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	238401	179996148	919112	1564	20414										
CNOT6	0	genome.wustl.edu	37	chr5	179996254	179996254	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacattattgataaagcctCtcgcaacctcaaatccagtg	6	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	179996254	179996254	C	T	SNP	CNOT6	ENST00000261951	human	ensembl	69_37n	1	known	missense	c.1172	p.S391F	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300	77	0	0	50	16	24.24	-	-	-	T	179996254	C	T	179996254	3	4	240	1	0	0	0	0	1	0	0	0	3652	913	32	2	1206	2	CNOT6	5	179996254	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106	179996254	919006	1565	20415										
TRIM41	0	genome.wustl.edu	37	chr5	180661694	180661694	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagcccacgtgcacaccttCtcggctgccttcctgggcga	10	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	180661694	180661694	C	T	SNP	TRIM41	ENST00000315073	human	ensembl	69_37n	1	known	silent	c.1812	p.F604	0.942	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063	45	0	0	39	15	27.78	-	-	-	T	180661694	C	T	180661694	2	4	240	1	0	0	0	0	0	0	0	1	16612	912	32	2		2	TRIM41	5	180661694	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	665440	180661694	253566	1566	20416										
GNB2L1	0	genome.wustl.edu	37	chr5	180668564	180668564	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcgagatccagagacaatCtgccggttgtcagaggagaa	12	9	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	5	180668564	180668564	C	A	SNP	GNB2L1	ENST00000512968	human	ensembl	69_37n	-1	novel	splice_site	c.282-1	e3-1	1.000	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	GNB2L1	HGNC	ENSG00000204628	96	0	0	84	27	24.32	-	-	-	A	180668564	C	A	180668564	5	1	240	1	0	0	0	0	0	0	1	0	6570	912	32	2	620	2	GNB2L1	5	180668564	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6870	180668564	246696	1567	20417										
EXOC2	0	genome.wustl.edu	37	chr6	564085	564085	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacgtactcggagatccaaGatgagatcctggatagtctg	11	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	564085	564085	G	C	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	missense	c.1737	p.I579M	0.487	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	57	0	0	61	12	16.44	-	-	-	C	564085	G	C	564085	3	2	240	1	0	0	0	0	1	0	0	0	5338	932	33	2	1089	2	EXOC2	6	564085	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		564085	170550982	1568	20418										
RIPK1	0	genome.wustl.edu	37	chr6	3104462	3104462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgctcttaattatagaaaGagtattcaaacgaaaatgca	6	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	3104462	3104462	G	C	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	missense	c.919	p.E307Q	0.003	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	89	0	0	76	22	22.45	-	-	-	C	3104462	G	C	3104462	3	2	240	1	0	0	0	0	1	0	0	0	13466	943	33	2	945	2	RIPK1	6	3104462	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2540377	3104462	168010605	1569	20419										
PRPF4B	0	genome.wustl.edu	37	chr6	4047419	4047419	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctttaaggttcatctcaGaagaagttgttggcacctga	9	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	4047419	4047419	G	C	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.1872	p.Q624H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	264	0	0	159	52	24.64	-	-	-	C	4047419	G	C	4047419	3	2	240	1	0	0	0	0	1	0	0	0	12654	933	33	2	1898	2	PRPF4B	6	4047419	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	942957	4047419	167067648	1570	20420										
TFAP2A	0	genome.wustl.edu	37	chr6	10410368	10410368	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgggcgtgcagggggttCaggctgtaggggtcgttgac	21	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	10410368	10410368	C	T	SNP	TFAP2A	ENST00000488193	human	ensembl	69_37n	-1	known	missense	c.109	p.E37K	0.994	NULL	NULL	-	no_errors	TFAP2A	HGNC	ENSG00000137203	60	0	0	17	6	26.09	-	-	-	T	10410368	C	T	10410368	3	4	240	1	0	0	0	0	1	0	0	0	15882	813	29	2	1091	2	TFAP2A	6	10410368	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6362949	10410368	160704699	1571	20421										
GCNT2	0	genome.wustl.edu	37	chr6	10529249	10529249	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggagaataaacgttttctGagggcagctctgtccaatgc	12	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	10529249	10529249	G	A	SNP	GCNT2	ENST00000379597	human	ensembl	69_37n	1	known	silent	c.105	p.L35	0.000	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846	97	0	0	55	48	46.6	-	-	-	A	10529249	G	A	10529249	2	1	240	1	0	0	0	0	0	0	0	1	6351	1277	45	2		2	GCNT2	6	10529249	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	118881	10529249	160585818	1572	20422										
NEDD9	0	genome.wustl.edu	37	chr6	11190431	11190431	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagctgccagggccgggtctGaagagggcctctgcgttggt	17	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	11190431	11190431	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	silent	c.1671	p.F557	0.987	pfam_Serine_rich	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	64	0	0	70	22	23.91	-	-	-	A	11190431	G	A	11190431	2	1	240	1	0	0	0	0	0	0	0	1	10385	1281	45	2		2	NEDD9	6	11190431	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	661182	11190431	159924636	1573	20423										
HIVEP1	0	genome.wustl.edu	37	chr6	12161807	12161807	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcctgtcagccacaccctCagtcacagctagcccgcagc	8	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	12161807	12161807	C	A	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	nonsense	c.6623	p.S2208*	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	49	0	0	49	8	14.04	-	-	-	A	12161807	C	A	12161807	4	1	240	1	0	0	0	0	0	1	0	0	7237	838	29	2	6649	2	HIVEP1	6	12161807	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	971376	12161807	158953260	1574	20424										
JARID2	0	genome.wustl.edu	37	chr6	15507634	15507634	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtccatcctgcgtcacctCggtgctgtgcctggtaagcc	13	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	15507634	15507634	C	T	SNP	JARID2	ENST00000341776	human	ensembl	69_37n	1	known	silent	c.2718	p.L906	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	70	0	0	48	19	28.36	-	-	-	T	15507634	C	T	15507634	2	4	240	1	0	0	0	0	0	0	0	1	7999	871	31	1		1	JARID2	6	15507634	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3345827	15507634	155607433	1575	20425										
KIF13A	0	genome.wustl.edu	37	chr6	17837133	17837133	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgagagagctgctctctCagtttctcgacttcctcccg	9	15	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	17837133	17837133	C	T	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	silent	c.1131	p.L377	0.090	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	118	0	0	58	61	51.26	-	-	-	T	17837133	C	T	17837133	2	4	240	1	0	0	0	0	0	0	0	1	8326	813	29	2		2	KIF13A	6	17837133	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2329499	17837133	153277934	1576	20426										
E2F3	0	genome.wustl.edu	37	chr6	20483009	20483009	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaggggctgcagtctgtctGaggatgggggcatgctggcc	18	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	20483009	20483009	G	C	SNP	E2F3	ENST00000346618	human	ensembl	69_37n	1	known	missense	c.742	p.E248Q	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242	98	0	0	74	19	20.43	-	-	-	C	20483009	G	C	20483009	3	2	240	1	0	0	0	0	1	0	0	0	4903	1291	45	2	756	2	E2F3	6	20483009	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2645876	20483009	150632058	1577	20427										
E2F3	0	genome.wustl.edu	37	chr6	20483090	20483090	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagagaagaaattagatGaactgatccaaagctgcacc	10	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	20483090	20483090	G	A	SNP	E2F3	ENST00000346618	human	ensembl	69_37n	1	known	missense	c.823	p.E275K	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242	77	0	0	59	25	29.76	-	-	-	A	20483090	G	A	20483090	3	1	240	1	0	0	0	0	1	0	0	0	4903	1291	45	2	837	2	E2F3	6	20483090	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81	20483090	150631977	1578	20428										
DCDC2	0	genome.wustl.edu	37	chr6	24205386	24205386	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattgtgacatcgtgtggctGaatgctggaattacaatcaa	10	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	24205386	24205386	G	A	SNP	DCDC2	ENST00000378450	human	ensembl	69_37n	-1	known	silent	c.126	p.F42	0.000	NULL	NULL	-	no_errors	DCDC2	HGNC	ENSG00000146038	102	1	0.97	79	29	26.85	-	-	-	A	24205386	G	A	24205386	2	1	240	1	0	0	0	0	0	0	0	1	4316	1305	45	2		2	DCDC2	6	24205386	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3722296	24205386	146909681	1579	20429										
GPLD1	0	genome.wustl.edu	37	chr6	24460566	24460566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtatagtttatattcctgtCaacactttcagttagggatg	8	6	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	24460566	24460566	C	G	SNP	GPLD1	ENST00000230036	human	ensembl	69_37n	-1	known	missense	c.949	p.D317H	0.000	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293	168	0	0	139	33	19.19	-	-	-	G	24460566	C	G	24460566	3	3	240	1	0	0	0	0	1	0	0	0	6664	826	29	2	1629	2	GPLD1	6	24460566	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	255180	24460566	146654501	1580	20430										
KIAA0319	0	genome.wustl.edu	37	chr6	24596614	24596614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaaagtgagataagacctGatggggcccatcttcttggg	12	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	24596614	24596614	G	A	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	silent	c.288	p.I96	0.001	smart_MANSC_N,pfscan_MANSC	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	57	0	0	37	31	45.59	-	-	-	A	24596614	G	A	24596614	2	1	240	1	0	0	0	0	0	0	0	1	8220	1280	45	2		2	KIAA0319	6	24596614	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	136048	24596614	146518453	1581	20431										
LRRC16A	0	genome.wustl.edu	37	chr6	25600861	25600861	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagggaaggtggaacggagtGacagcaagagcagcccacag	16	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	25600861	25600861	G	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.3439	p.D1147Y	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	45	0	0	40	10	20	-	-	-	T	25600861	G	T	25600861	3	4	240	1	0	0	0	0	1	0	0	0	9037	1290	45	2	3569	2	LRRC16A	6	25600861	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1004247	25600861	145514206	1582	20432										
SLC17A4	0	genome.wustl.edu	37	chr6	25776933	25776933	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctcagactcatcaccatCaggaaactcttcactgccat	4	15	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	25776933	25776933	C	T	SNP	SLC17A4	ENST00000377905	human	ensembl	69_37n	1	known	silent	c.1098	p.I366	0.995	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039	134	0	0	112	38	25.33	-	-	-	T	25776933	C	T	25776933	2	4	240	1	0	0	0	0	0	0	0	1	14508	816	29	2		2	SLC17A4	6	25776933	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	176072	25776933	145338134	1583	20433										
SLC17A2	0	genome.wustl.edu	37	chr6	25921449	25921449	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaaccatgatgaccaaaatCactccgaagtcagcagccag	8	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	25921449	25921449	C	T	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	silent	c.432	p.V144	0.742	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	103	0	0	78	24	23.53	-	-	-	T	25921449	C	T	25921449	2	4	240	1	0	0	0	0	0	0	0	1	14506	813	29	2		2	SLC17A2	6	25921449	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	144516	25921449	145193618	1584	20434										
HIST1H4B	0	genome.wustl.edu	37	chr6	26027258	26027258	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcttgcgcttggcgtgctCcgtgtaggtcacggcgtccc	14	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26027258	26027258	C	A	SNP	HIST1H4B	ENST00000377364	human	ensembl	69_37n	-1	known	nonsense	c.223	p.E75*	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4B	HGNC	ENSG00000124529	71	0	0	52	19	26.76	-	-	-	A	26027258	C	A	26027258	4	1	240	1	0	0	0	0	0	1	0	0	7217	864	30	2	92	2	HIST1H4B	6	26027258	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	105809	26027258	145087809	1585	20435										
HIST1H3C	0	genome.wustl.edu	37	chr6	26045645	26045645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctctcattgcaaatggctCgtacgaagcaaacagctcgc	9	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26045645	26045645	C	G	SNP	HIST1H3C	ENST00000540144	human	ensembl	69_37n	1	known	missense	c.7	p.R3G	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3C	HGNC	ENSG00000196532	29	0	0	16	9	36	-	-	-	G	26045645	C	G	26045645	3	3	240	1	0	0	0	0	1	0	0	0	7208	884	31	3	9	3	HIST1H3C	6	26045645	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18387	26045645	145069422	1586	20436										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056108	26056108	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagcacttttggcagctttCttgggcttcgcaaccttggc	11	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26056108	26056108	C	T	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	silent	c.549	p.K183	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	105	0	0	64	25	27.78	-	-	-	T	26056108	C	T	26056108	2	4	240	1	0	0	0	0	0	0	0	1	7175	912	32	2		2	HIST1H1C	6	26056108	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10463	26056108	145058959	1587	20437										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056153	26056153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgggctcttagccactttCttggttacagtggccgcggc	12	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26056153	26056153	C	G	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	missense	c.504	p.K168N	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	105	0	0	77	17	18.09	-	-	-	G	26056153	C	G	26056153	3	3	240	1	0	0	0	0	1	0	0	0	7175	912	32	2	141	2	HIST1H1C	6	26056153	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45	26056153	145058914	1588	20438										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056210	26056210	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcggtgttttcttagcgctCttcttcggagttgcgccgcc	11	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26056210	26056210	C	G	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	missense	c.447	p.K149N	0.676	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	100	0	0	60	14	18.92	-	-	-	G	26056210	C	G	26056210	3	3	240	1	0	0	0	0	1	0	0	0	7175	912	32	2	198	2	HIST1H1C	6	26056210	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	57	26056210	145058857	1589	20439										
HIST1H2BD	0	genome.wustl.edu	37	chr6	26158660	26158660	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgcattacaacaagcgctCgaccatcacctccagggaga	10	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26158660	26158660	C	A	SNP	HIST1H2BD	ENST00000289316	human	ensembl	69_37n	1	known	nonsense	c.263	p.S88*	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BD	HGNC	ENSG00000158373	96	0	0	50	27	35.06	-	-	-	A	26158660	C	A	26158660	4	1	240	1	0	0	0	0	0	1	0	0	7194	893	31	3	265	3	HIST1H2BD	6	26158660	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102450	26158660	144956407	1590	20440										
HIST1H4E	0	genome.wustl.edu	37	chr6	26205070	26205070	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtgtttctggaaaacgtGattcgtgatgctgtgactta	12	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26205070	26205070	G	T	SNP	HIST1H4E	ENST00000360441	human	ensembl	69_37n	1	known	silent	c.198	p.V66	0.875	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518	134	0	0	92	24	20.69	-	-	-	T	26205070	G	T	26205070	2	4	240	1	0	0	0	0	0	0	0	1	7220	1277	45	2		2	HIST1H4E	6	26205070	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46410	26205070	144909997	1591	20441										
HIST1H1D	0	genome.wustl.edu	37	chr6	26234497	26234497	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggaacgtcccgccagtttCactttttcttcggagctgcc	11	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26234497	26234497	C	T	SNP	HIST1H1D	ENST00000244534	human	ensembl	69_37n	-1	known	silent	c.665	p.*222	0.002	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575	89	0	0	57	15	20.83	-	-	-	T	26234497	C	T	26234497	2	4	240	1	0	0	0	0	0	0	0	1	7176	837	29	2		2	HIST1H1D	6	26234497	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29427	26234497	144880570	1592	20442										
HIST1H3F	0	genome.wustl.edu	37	chr6	26250515	26250515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatagcacacaggttggtgtCctcaaagagccccaccaggt	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26250515	26250515	C	T	SNP	HIST1H3F	ENST00000446824	human	ensembl	69_37n	-1	known	missense	c.319	p.D107N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3F	HGNC	ENSG00000256316	68	0	0	72	31	30.1	-	-	-	T	26250515	C	T	26250515	3	4	240	1	0	0	0	0	1	0	0	0	7211	855	30	2	95	2	HIST1H3F	6	26250515	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16018	26250515	144864552	1593	20443										
HIST1H2BH	0	genome.wustl.edu	37	chr6	26252107	26252107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttcgagcgcatcgccggcGaggcttcccgcctggctcat	12	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26252107	26252107	G	A	SNP	HIST1H2BH	ENST00000356350	human	ensembl	69_37n	1	known	missense	c.229	p.E77K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459	98	0	0	38	49	56.32	-	-	-	A	26252107	G	A	26252107	3	1	240	1	0	0	0	0	1	0	0	0	7198	1059	37	1	231	1	HIST1H2BH	6	26252107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1592	26252107	144862960	1594	20444										
BTN2A2	0	genome.wustl.edu	37	chr6	26385338	26385338	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtcacccgagaaaaatgctGaggacatggaggtgcggtgg	16	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26385338	26385338	G	A	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	missense	c.190	p.E64K	0.693	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	171	0	0	131	48	26.67	-	-	-	A	26385338	G	A	26385338	3	1	240	1	0	0	0	0	1	0	0	0	1570	1291	45	2	196	2	BTN2A2	6	26385338	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	133231	26385338	144729729	1595	20445										
BTN2A2	0	genome.wustl.edu	37	chr6	26385444	26385444	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatggaggagtaccggggaaGaatcacctttgtgagcaaag	15	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	26385444	26385444	G	T	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	missense	c.296	p.R99I	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	147	0	0	107	24	18.32	-	-	-	T	26385444	G	T	26385444	3	4	240	1	0	0	0	0	1	0	0	0	1570	942	33	2	302	2	BTN2A2	6	26385444	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106	26385444	144729623	1596	20446										
HIST1H2BK	0	genome.wustl.edu	37	chr6	27114200	27114200	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgcttacttggcaagtttaCttagcgctggtgtacttggt	11	8	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	27114200	27114200	C	G	SNP	HIST1H2BK	ENST00000356950	human	ensembl	69_37n	-1	known	missense	c.378	p.K126N	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BK	HGNC	ENSG00000197903	118	0	0	73	15	17.05	-	-	-	G	27114200	C	G	27114200	3	3	240	1	0	0	0	0	1	0	0	0	7201	564	20	4	6	4	HIST1H2BK	6	27114200	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	728756	27114200	144000867	1597	20447										
HIST1H2AH	0	genome.wustl.edu	37	chr6	27115004	27115004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccccgtgggccgagtgcacCgcctgctccgcaagggtaat	13	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	27115004	27115004	C	T	SNP	HIST1H2AH	ENST00000377459	human	ensembl	69_37n	1	known	missense	c.97	p.R33C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AH	HGNC	ENSG00000184825	77	0	0	43	15	25.86	-	-	-	T	27115004	C	T	27115004	3	4	240	1	0	0	0	0	1	0	0	0	7185	652	23	1	99	1	HIST1H2AH	6	27115004	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	804	27115004	144000063	1598	20448										
HIST1H3H	0	genome.wustl.edu	37	chr6	27778004	27778004	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtacagtggctctccgcgaGattcgccgctaccagaagtc	12	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	27778004	27778004	G	A	SNP	HIST1H3H	ENST00000369163	human	ensembl	69_37n	1	known	silent	c.153	p.E51	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3H	HGNC	ENSG00000203813	66	0	0	38	19	33.33	-	-	-	A	27778004	G	A	27778004	2	1	240	1	0	0	0	0	0	0	0	1	7213	933	33	2		2	HIST1H3H	6	27778004	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	663000	27778004	143337063	1599	20449										
HIST1H4K	0	genome.wustl.edu	37	chr6	27798995	27798995	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgatagaaagggacgctCaaccaccgaaaccgtagagg	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	27798995	27798995	C	T	SNP	HIST1H4K	ENST00000357549	human	ensembl	69_37n	-1	known	silent	c.311	p.*104	0.004	NULL	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4K	HGNC	ENSG00000197914	43	0	0	31	8	20.51	-	-	-	T	27798995	C	T	27798995	2	4	240	1	0	0	0	0	0	0	0	1	7226	837	29	2		2	HIST1H4K	6	27798995	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20991	27798995	143316072	1600	20450										
HIST1H2BO	0	genome.wustl.edu	37	chr6	27861394	27861394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgaagcaagtccaccccGacaccggcatctcatcgaag	9	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	27861394	27861394	G	A	SNP	HIST1H2BO	ENST00000303806	human	ensembl	69_37n	1	known	missense	c.154	p.D52N	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BO	HGNC	ENSG00000196331	166	0	0	102	24	19.05	-	-	-	A	27861394	G	A	27861394	3	1	240	1	0	0	0	0	1	0	0	0	7205	1058	37	1	156	1	HIST1H2BO	6	27861394	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62399	27861394	143253673	1601	20451										
ZNF192	0	genome.wustl.edu	37	chr6	28116382	28116382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggagacactaggaccccGagaagctctgatccaactac	9	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	28116382	28116382	G	A	SNP	ZNF192	ENST00000330236	human	ensembl	69_37n	1	known	missense	c.197	p.R66Q	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF192	HGNC	ENSG00000198315	65	0	0	46	19	29.23	-	-	-	A	28116382	G	A	28116382	3	1	240	1	0	0	0	0	1	0	0	0	17852	1058	37	1	199	1	ZNF192	6	28116382	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	254988	28116382	142998685	1602	20452										
PGBD1	0	genome.wustl.edu	37	chr6	28254875	28254875	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggcctgttccccacggatCagctcatctccaggaaaaaa	9	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	28254875	28254875	C	A	SNP	PGBD1	ENST00000259883	human	ensembl	69_37n	1	known	nonsense	c.572	p.S191*	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_Srcr_rcpt,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338	88	0	0	62	24	27.91	-	-	-	A	28254875	C	A	28254875	4	1	240	1	0	0	0	0	0	1	0	0	11854	838	29	2	582	2	PGBD1	6	28254875	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	138493	28254875	142860192	1603	20453										
OR2J2	0	genome.wustl.edu	37	chr6	29141771	29141771	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtcctactggtggtgatgtCatatgatcgttatgtagctg	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	29141771	29141771	C	T	SNP	OR2J2	ENST00000377167	human	ensembl	69_37n	1	known	missense	c.359	p.S120L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700	151	0	0	122	52	29.89	-	-	-	T	29141771	C	T	29141771	3	4	240	1	0	0	0	0	1	0	0	0	11076	838	29	2	361	2	OR2J2	6	29141771	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	886896	29141771	141973296	1604	20454										
MAS1L	0	genome.wustl.edu	37	chr6	29454997	29454997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatagcatggaagagcccaGaaagctttagaaatatgaca	11	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	29454997	29454997	G	C	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.683	p.S228C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	15	0	0	12	5	29.41	-	-	-	C	29454997	G	C	29454997	3	2	240	1	0	0	0	0	1	0	0	0	9392	942	33	2	455	2	MAS1L	6	29454997	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	313226	29454997	141660070	1605	20455										
DPCR1	0	genome.wustl.edu	37	chr6	30918809	30918809	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgagaagaccacaccattCccagcagagcctacagaaaa	7	12	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	30918809	30918809	C	G	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	missense	c.2568	p.F856L	0.697	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	142	0	0	90	28	23.73	-	-	-	G	30918809	C	G	30918809	3	3	240	1	0	0	0	0	1	0	0	0	4747	854	30	2	2574	2	DPCR1	6	30918809	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1463812	30918809	140196258	1606	20456										
MICA	0	genome.wustl.edu	37	chr6	31379030	31379030	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaacgtcaggaatttcttGaaggaagatgccatgaagac	11	6	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31379030	31379030	G	C	SNP	MICA	ENST00000364810	human	ensembl	69_37n	1	known	missense	c.507	p.L169F	0.003	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	MICA	HGNC	ENSG00000204520	65	0	0	44	13	22.81	-	-	-	C	31379030	G	C	31379030	3	2	240	1	0	0	0	0	1	0	0	0	9639	1281	45	2	517	2	MICA	6	31379030	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	460221	31379030	139736037	1607	20457										
MICB	0	genome.wustl.edu	37	chr6	31474150	31474150	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actatcgcgctatgcaggcaGactgcctgcagaaactacag	10	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31474150	31474150	G	C	SNP	MICB	ENST00000252229	human	ensembl	69_37n	1	known	missense	c.556	p.D186H	0.371	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	MICB	HGNC	ENSG00000204516	58	0	0	58	21	26.58	-	-	-	C	31474150	G	C	31474150	3	2	240	1	0	0	0	0	1	0	0	0	9646	942	33	2	566	2	MICB	6	31474150	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	95120	31474150	139640917	1608	20458										
C2	0	genome.wustl.edu	37	chr6	31896598	31896598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggtggcaatgtgagcttcGagtgtgaggatggcttcata	16	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31896598	31896598	G	A	SNP	C2	ENST00000299367	human	ensembl	69_37n	1	known	missense	c.346	p.E116K	0.840	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP	pfam_VWF_A,pfam_Peptidase_S1_S6,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C2	HGNC	ENSG00000166278	84	0	0	76	31	28.97	-	-	-	A	31896598	G	A	31896598	3	1	240	1	0	0	0	0	1	0	0	0	2094	1059	37	1	433	1	C2	6	31896598	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	422448	31896598	139218469	1609	20459										
DOM3Z	0	genome.wustl.edu	37	chr6	31939383	31939383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcagagaaggtgctggacGaggtagtttgttccgaggct	18	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31939383	31939383	G	T	SNP	DOM3Z	ENST00000337523	human	ensembl	69_37n	-1	known	missense	c.70	p.R24S	0.000	NULL	pfam_RAI1	-	no_errors	DOM3Z	HGNC	ENSG00000204348	54	0	0	64	27	29.67	-	-	-	T	31939383	G	T	31939383	3	4	240	1	0	0	0	0	1	0	0	0	4740	1058	37	3	1144	3	DOM3Z	6	31939383	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42785	31939383	139175684	1610	20460										
C4B	0	genome.wustl.edu	37	chr6	31995117	31995117	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgcccggcctgttgccttCtctgtggtgcccacggcagc	12	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31995117	31995117	C	T	SNP	C4B	ENST00000435363	human	ensembl	69_37n	1	known	silent	c.2697	p.F899	0.997	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C4B	HGNC	ENSG00000224389	18	0	0	9	12	57.14	-	-	-	T	31995117	C	T	31995117	2	4	240	1	0	0	0	0	0	0	0	1	2269	912	32	2		2	C4B	6	31995117	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55734	31995117	139119950	1611	20461										
C4B	0	genome.wustl.edu	37	chr6	31996782	31996782	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctttgtgaccatcgcccttCatcatgggctggccgtcttc	9	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	31996782	31996782	C	T	SNP	C4B	ENST00000435363	human	ensembl	69_37n	1	known	missense	c.3448	p.H1150Y	0.828	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C4B	HGNC	ENSG00000224389	40	0	0	39	14	26.42	-	-	-	T	31996782	C	T	31996782	3	4	240	1	0	0	0	0	1	0	0	0	2269	826	29	2	8455	2	C4B	6	31996782	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1665	31996782	139118285	1612	20462										
WDR46	0	genome.wustl.edu	37	chr6	33254619	33254619	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaccccaccacgatgacaGagaatctttgccagtggctc	10	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	33254619	33254619	G	C	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	silent	c.1068	p.L356	0.980	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	91	0	0	81	36	30.77	-	-	-	C	33254619	G	C	33254619	2	2	240	1	0	0	0	0	0	0	0	1	17396	929	33	2		2	WDR46	6	33254619	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1257837	33254619	137860448	1613	20463										
RGL2	0	genome.wustl.edu	37	chr6	33263957	33263957	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggagattgcggatgaggtCagcgctgccccccccaacac	12	16	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	33263957	33263957	C	T	SNP	RGL2	ENST00000497454	human	ensembl	69_37n	-1	known	missense	c.616	p.D206N	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441	42	0	0	32	9	21.95	-	-	-	T	33263957	C	T	33263957	3	4	240	1	0	0	0	0	1	0	0	0	13360	826	29	2	1769	2	RGL2	6	33263957	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9338	33263957	137851110	1614	20464										
ITPR3	0	genome.wustl.edu	37	chr6	33589434	33589434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatcgtctccctgtacgccGagggctccgtcaatggcttc	10	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	33589434	33589434	G	C	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.55	p.E19Q	1.000	pfam_Ins145_P3_rcpt	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	27	0	0	19	5	20.83	-	-	-	C	33589434	G	C	33589434	3	2	240	1	0	0	0	0	1	0	0	0	7976	1059	37	3	57	3	ITPR3	6	33589434	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	325477	33589434	137525633	1615	20465										
LEMD2	0	genome.wustl.edu	37	chr6	33740464	33740464	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctccacaccagcatgtcctCtcctgcaacgcggtgggact	9	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	33740464	33740464	C	G	SNP	LEMD2	ENST00000293760	human	ensembl	69_37n	-1	known	missense	c.1453	p.E485Q	1.000	pfam_Inner-Nucl-membr_MAN1	pfam_Inner-Nucl-membr_MAN1,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM	-	no_errors	LEMD2	HGNC	ENSG00000161904	21	0	0	39	17	30.36	-	-	-	G	33740464	C	G	33740464	3	3	240	1	0	0	0	0	1	0	0	0	8774	922	32	2	62	2	LEMD2	6	33740464	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	151030	33740464	137374603	1616	20466										
ANKS1A	0	genome.wustl.edu	37	chr6	34950895	34950895	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtgcctttctaggaactGacgtcaacataaaagataac	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	34950895	34950895	G	C	SNP	ANKS1A	ENST00000360359	human	ensembl	69_37n	1	known	missense	c.814	p.D272H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999	96	0	0	75	16	17.58	-	-	-	C	34950895	G	C	34950895	3	2	240	1	0	0	0	0	1	0	0	0	687	1290	45	2	836	2	ANKS1A	6	34950895	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1210431	34950895	136164172	1617	20467										
SCUBE3	0	genome.wustl.edu	37	chr6	35200679	35200679	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgcccacatttgccgggaGacacccaaggggggtattgc	14	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	35200679	35200679	G	A	SNP	SCUBE3	ENST00000394681	human	ensembl	69_37n	1	known	silent	c.522	p.E174	1.000	smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,prints_Thrombomodulin,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE3	HGNC	ENSG00000146197	60	0	0	21	35	62.5	-	-	-	A	35200679	G	A	35200679	2	1	240	1	0	0	0	0	0	0	0	1	14034	933	33	2		2	SCUBE3	6	35200679	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	249784	35200679	135914388	1618	20468										
FKBP5	0	genome.wustl.edu	37	chr6	35543683	35543683	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttttcattagtgaccccttCtgaagtcttcttgcccattg	6	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	35543683	35543683	C	G	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	missense	c.1303	p.E435Q	0.010	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	220	0	0	152	51	25.12	-	-	-	G	35543683	C	G	35543683	3	3	240	1	0	0	0	0	1	0	0	0	5957	922	32	2	74	2	FKBP5	6	35543683	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	343004	35543683	135571384	1619	20469										
C6orf89	0	genome.wustl.edu	37	chr6	36867365	36867365	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctggaaaagaatgaacctCagagaccccccccgcagtat	9	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	36867365	36867365	C	T	SNP	C6orf89	ENST00000355190	human	ensembl	69_37n	1	known	nonsense	c.166	p.Q56*	1.000	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	119	0	0	68	18	20.93	-	-	-	T	36867365	C	T	36867365	4	4	240	1	0	0	0	0	0	1	0	0	2395	827	29	2	172	2	C6orf89	6	36867365	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1323682	36867365	134247702	1620	20470										
DNAH8	0	genome.wustl.edu	37	chr6	38704918	38704918	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatgttggcaaatatatttCtaccagctgttcttgcaaca	6	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	38704918	38704918	C	G	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.187	p.L63V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	92	0	0	71	15	17.44	-	-	-	G	38704918	C	G	38704918	3	3	240	1	0	0	0	0	1	0	0	0	4642	912	32	2	193	2	DNAH8	6	38704918	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1837553	38704918	132410149	1621	20471										
DNAH8	0	genome.wustl.edu	37	chr6	38835902	38835902	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactcttggatctcaaaaaaGagccagaccagaagatagtg	10	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	38835902	38835902	G	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.6107	p.R2036T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	172	0	0	98	34	25.76	-	-	-	C	38835902	G	C	38835902	3	2	240	1	0	0	0	0	1	0	0	0	4642	942	33	2	6281	2	DNAH8	6	38835902	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	130984	38835902	132279165	1622	20472										
DNAH8	0	genome.wustl.edu	37	chr6	38913262	38913262	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggagcagctctggacctGaaagcctgtcctcccaaacc	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	38913262	38913262	G	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.11376	p.L3792	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	79	0	0	50	19	27.54	-	-	-	C	38913262	G	C	38913262	2	2	240	1	0	0	0	0	0	0	0	1	4642	1277	45	2		2	DNAH8	6	38913262	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77360	38913262	132201805	1623	20473										
DNAH8	0	genome.wustl.edu	37	chr6	38980274	38980274	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgctcgtatacctcagctCtggaaaagagtgtcttggga	12	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	38980274	38980274	C	G	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.12924	p.L4308	0.003	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	128	0	0	100	24	19.35	-	-	-	G	38980274	C	G	38980274	2	3	240	1	0	0	0	0	0	0	0	1	4642	900	32	2		2	DNAH8	6	38980274	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	67012	38980274	132134793	1624	20474										
TOMM6	0	genome.wustl.edu	37	chr6	41755473	41755473	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccggtgagcgctgctggctCggctaatgaaactcccgaaa	12	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	41755473	41755473	C	G	SNP	TOMM6	ENST00000398881	human	ensembl	69_37n	1	novel	missense	c.38	p.S13W	0.002	NULL	NULL	-	no_errors	TOMM6	HGNC	ENSG00000214736	41	0	0	23	8	25.81	-	-	-	G	41755473	C	G	41755473	3	3	240	1	0	0	0	0	1	0	0	0	16456	893	31	3	40	3	TOMM6	6	41755473	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2775199	41755473	129359594	1625	20475										
MRPS10	0	genome.wustl.edu	37	chr6	42181870	42181870	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacataccacaggtttggtCaaatcctttggaacatcaac	7	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	42181870	42181870	C	G	SNP	MRPS10	ENST00000053468	human	ensembl	69_37n	-1	known	missense	c.174	p.L58F	0.125	NULL	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	-	no_errors	MRPS10	HGNC	ENSG00000048544	81	0	0	66	21	24.14	-	-	-	G	42181870	C	G	42181870	3	3	240	1	0	0	0	0	1	0	0	0	9893	825	29	2	451	2	MRPS10	6	42181870	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	426397	42181870	128933197	1626	20476										
UBR2	0	genome.wustl.edu	37	chr6	42612058	42612058	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatggaaaaagatttagttCtgagattacccataaggtaa	8	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	42612058	42612058	C	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.2204	p.S735F	0.996	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	130	0	0	114	42	26.92	-	-	-	T	42612058	C	T	42612058	3	4	240	1	0	0	0	0	1	0	0	0	16999	913	32	2	2424	2	UBR2	6	42612058	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	430188	42612058	128503009	1627	20477										
KIAA0240	0	genome.wustl.edu	37	chr6	42832738	42832738	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagcctctgaaggccagtCagtgctctcccggccctgag	13	14	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	42832738	42832738	C	T	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	nonsense	c.2794	p.Q932*	0.327	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	30	0	0	28	15	34.88	-	-	-	T	42832738	C	T	42832738	4	4	240	1	0	0	0	0	0	1	0	0	8216	827	29	2	2836	2	KIAA0240	6	42832738	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	220680	42832738	128282329	1628	20478										
CUL7	0	genome.wustl.edu	37	chr6	43013069	43013069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgacgacagagctgctcCcggaacactggccagaacgt	13	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	43013069	43013069	C	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	silent	c.3186	p.R1062	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	80	0	0	58	22	27.5	-	-	-	T	43013069	C	T	43013069	2	4	240	1	0	0	0	0	0	0	0	1	4091	610	22	4		4	CUL7	6	43013069	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	180331	43013069	128101998	1629	20479										
CUL7	0	genome.wustl.edu	37	chr6	43017793	43017793	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagaggagttcccaccactCagccagggtcaggtgttcac	12	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	43017793	43017793	C	G	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.1729	p.E577Q	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	55	0	0	56	14	20	-	-	-	G	43017793	C	G	43017793	3	3	240	1	0	0	0	0	1	0	0	0	4091	835	29	2	3703	2	CUL7	6	43017793	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4724	43017793	128097274	1630	20480										
XPO5	0	genome.wustl.edu	37	chr6	43534915	43534915	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtaacttacttttctgctGactgcaatgagaagacactc	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	43534915	43534915	G	A	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	silent	c.825	p.V275	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	65	0	0	40	36	47.37	-	-	-	A	43534915	G	A	43534915	2	1	240	1	0	0	0	0	0	0	0	1	17544	1277	45	2		2	XPO5	6	43534915	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	517122	43534915	127580152	1631	20481										
MRPL14	0	genome.wustl.edu	37	chr6	44081802	44081802	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttgatggccagtagtatCtggtcgcccaccttgcccac	9	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	44081802	44081802	C	G	SNP	MRPL14	ENST00000372014	human	ensembl	69_37n	-1	known	missense	c.216	p.Q72H	0.746	pfam_Ribosomal_L14b/L23e,superfamily_Ribosomal_L14_dom	pfam_Ribosomal_L14b/L23e,superfamily_Ribosomal_L14_dom	-	no_errors	MRPL14	HGNC	ENSG00000180992	73	0	0	59	24	28.92	-	-	-	G	44081802	C	G	44081802	3	3	240	1	0	0	0	0	1	0	0	0	9851	912	32	2	225	2	MRPL14	6	44081802	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	546887	44081802	127033265	1632	20482										
SLC29A1	0	genome.wustl.edu	37	chr6	44200651	44200651	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgccgctacctgactgtggtCttcgagcacgatgcctggtt	12	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	44200651	44200651	C	G	SNP	SLC29A1	ENST00000313248	human	ensembl	69_37n	1	known	silent	c.1404	p.V468	0.868	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A1	HGNC	ENSG00000112759	64	0	0	65	16	19.75	-	-	-	G	44200651	C	G	44200651	2	3	240	1	0	0	0	0	0	0	0	1	14623	900	32	2		2	SLC29A1	6	44200651	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118849	44200651	126914416	1633	20483										
HSP90AB1	0	genome.wustl.edu	37	chr6	44221044	44221044	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttgaaaccgccctgctatCttctggcttttcccttgagg	9	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	44221044	44221044	C	G	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	missense	c.1994	p.S665C	0.998	pfam_Hsp90,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	124	1	0.8	107	38	26.21	-	-	-	G	44221044	C	G	44221044	3	3	240	1	0	0	0	0	1	0	0	0	7455	913	32	2	2032	2	HSP90AB1	6	44221044	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20393	44221044	126894023	1634	20484										
TCTE1	0	genome.wustl.edu	37	chr6	44250263	44250263	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattatgatgcgtgccttgtCatcatccaccttgcttcggg	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	44250263	44250263	C	T	SNP	TCTE1	ENST00000371505	human	ensembl	69_37n	-1	known	missense	c.880	p.D294N	0.970	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221	58	0	0	50	20	28.57	-	-	-	T	44250263	C	T	44250263	3	4	240	1	0	0	0	0	1	0	0	0	15812	826	29	2	633	2	TCTE1	6	44250263	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29219	44250263	126864804	1635	20485										
CDC5L	0	genome.wustl.edu	37	chr6	44371709	44371709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaggaaaactaccaagctCttgacgcagatttcaggaaa	9	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	44371709	44371709	C	G	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	missense	c.703	p.L235V	0.980	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	63	0	0	45	10	18.18	-	-	-	G	44371709	C	G	44371709	3	3	240	1	0	0	0	0	1	0	0	0	3111	913	32	2	725	2	CDC5L	6	44371709	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	121446	44371709	126743358	1636	20486										
RUNX2	0	genome.wustl.edu	37	chr6	45399733	45399733	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaaggttcaacgatctgaGatttgtgggccggagtggac	15	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	45399733	45399733	G	T	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	missense	c.761	p.R254I	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	116	0	0	51	20	28.17	-	-	-	T	45399733	G	T	45399733	3	4	240	1	0	0	0	0	1	0	0	0	13834	942	33	2	583	2	RUNX2	6	45399733	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1028024	45399733	125715334	1637	20487										
CYP39A1	0	genome.wustl.edu	37	chr6	46609906	46609906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatattctttacctgtacGataaacgatattttgcactg	5	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	46609906	46609906	G	A	SNP	CYP39A1	ENST00000275016	human	ensembl	69_37n	-1	known	missense	c.307	p.R103C	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP39A1	HGNC	ENSG00000146233	86	0	0	52	13	20	-	-	-	A	46609906	G	A	46609906	3	1	240	1	0	0	0	0	1	0	0	0	4208	1058	37	1	1146	1	CYP39A1	6	46609906	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1210173	46609906	124505161	1638	20488										
TDRD6	0	genome.wustl.edu	37	chr6	46659695	46659695	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagagtagaagctactctttCagagagaaaaataggagatt	10	4	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	46659695	46659695	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.3830	p.S1277L	0.001	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	28	0	0	14	9	39.13	-	-	-	T	46659695	C	T	46659695	3	4	240	1	0	0	0	0	1	0	0	0	15829	838	29	2	3832	2	TDRD6	6	46659695	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	49789	46659695	124455372	1639	20489										
GPR116	0	genome.wustl.edu	37	chr6	46836645	46836645	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactccctggtcgaggtcttGactgtcagtactgattctgc	10	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	46836645	46836645	G	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.1596	p.V532	0.049	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	107	0	0	86	26	23.21	-	-	-	A	46836645	G	A	46836645	2	1	240	1	0	0	0	0	0	0	0	1	6683	1277	45	2		2	GPR116	6	46836645	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	176950	46836645	124278422	1640	20490										
GPR111	0	genome.wustl.edu	37	chr6	47649126	47649126	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctttgcaagaaggctattCatagataaacatcctgttga	7	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	47649126	47649126	C	G	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.831	p.F277L	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	95	0	0	56	19	25.33	-	-	-	G	47649126	C	G	47649126	3	3	240	1	0	0	0	0	1	0	0	0	6678	825	29	2	645	2	GPR111	6	47649126	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	812481	47649126	123465941	1641	20491										
PKHD1	0	genome.wustl.edu	37	chr6	51927319	51927319	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttttcctacaacatacctGaaaggttgtccttcctgtga	6	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	51927319	51927319	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.1116	p.F372	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	74	0	0	87	18	17.14	-	-	-	A	51927319	G	A	51927319	2	1	240	1	0	0	0	0	0	0	0	1	12045	1281	45	2		2	PKHD1	6	51927319	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4278193	51927319	119187748	1642	20492										
TRAM2	0	genome.wustl.edu	37	chr6	52369498	52369498	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccgcagctgggagtggatGaagcgccacatgagccaggc	16	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	52369498	52369498	G	A	SNP	TRAM2	ENST00000182527	human	ensembl	69_37n	-1	known	silent	c.930	p.F310	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308	32	0	0	32	10	23.81	-	-	-	A	52369498	G	A	52369498	2	1	240	1	0	0	0	0	0	0	0	1	16549	1281	45	2		2	TRAM2	6	52369498	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	442179	52369498	118745569	1643	20493										
GSTA3	0	genome.wustl.edu	37	chr6	52767200	52767200	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttgctggcaatgtagttGagaatggctctggtctgtac	12	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	52767200	52767200	G	A	SNP	GSTA3	ENST00000211122	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA3	HGNC	ENSG00000174156	136	0	0	94	75	44.38	-	-	-	A	52767200	G	A	52767200	2	1	240	1	0	0	0	0	0	0	0	1	6883	1277	45	2		2	GSTA3	6	52767200	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	397702	52767200	118347867	1644	20494										
ICK	0	genome.wustl.edu	37	chr6	52870088	52870088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatgaggtctcatggccttCagggaggaataacctgcaat	13	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	52870088	52870088	C	T	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	silent	c.1758	p.L586	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	66	0	0	28	22	44	-	-	-	T	52870088	C	T	52870088	2	4	240	1	0	0	0	0	0	0	0	1	7538	813	29	2		2	ICK	6	52870088	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102888	52870088	118244979	1645	20495										
ICK	0	genome.wustl.edu	37	chr6	52883178	52883178	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgaatattgtgtcaatttCactggctccagggaagagtg	11	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	52883178	52883178	C	T	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	missense	c.613	p.E205K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	74	0	0	55	27	32.93	-	-	-	T	52883178	C	T	52883178	3	4	240	1	0	0	0	0	1	0	0	0	7538	835	29	2	1317	2	ICK	6	52883178	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13090	52883178	118231889	1646	20496										
TINAG	0	genome.wustl.edu	37	chr6	54173489	54173489	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttttgcaaggtactcgattCaaaagagccattttccaagg	9	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	54173489	54173489	C	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	silent	c.141	p.F47	1.000	NULL	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	110	0	0	78	27	25.71	-	-	-	T	54173489	C	T	54173489	2	4	240	1	0	0	0	0	0	0	0	1	16016	825	29	2		2	TINAG	6	54173489	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1290311	54173489	116941578	1647	20497										
FAM83B	0	genome.wustl.edu	37	chr6	54804515	54804515	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccccagttatatgtggtCatttgagaaagctcacctca	7	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	54804515	54804515	C	T	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.746	p.S249L	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	70	0	0	61	17	21.79	-	-	-	T	54804515	C	T	54804515	3	4	240	1	0	0	0	0	1	0	0	0	5679	838	29	2	760	2	FAM83B	6	54804515	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	631026	54804515	116310552	1648	20498										
FAM83B	0	genome.wustl.edu	37	chr6	54804577	54804577	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaacttgttgagtcctttGatgaagaatttagaactctc	8	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	54804577	54804577	G	C	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.808	p.D270H	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	101	0	0	80	21	20.79	-	-	-	C	54804577	G	C	54804577	3	2	240	1	0	0	0	0	1	0	0	0	5679	1290	45	2	822	2	FAM83B	6	54804577	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62	54804577	116310490	1649	20499										
DST	0	genome.wustl.edu	37	chr6	56433282	56433282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catacctgatttaactgctgCtattgcctttgcaggggtgg	11	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56433282	56433282	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.13897	p.A4633T	0.473	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	177	0	0	128	39	23.35	-	-	-	T	56433282	C	T	56433282	3	4	240	1	0	0	0	0	1	0	0	0	4818	797	28	4	9590	4	DST	6	56433282	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1628705	56433282	114681785	1650	20500										
DST	0	genome.wustl.edu	37	chr6	56443702	56443702	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttcagtttctctacagCaacctgctgacttgatatct	5	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56443702	56443702	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.12844	p.A4282P	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	130	0	0	78	13	14.29	-	-	-	G	56443702	C	G	56443702	3	3	240	1	0	0	0	0	1	0	0	0	4818	710	25	4	10663	4	DST	6	56443702	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10420	56443702	114671365	1651	20501										
DST	0	genome.wustl.edu	37	chr6	56468733	56468733	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatccttgagcttctcatCtcttggcaatgttgatgccc	8	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56468733	56468733	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.10594	p.D3532H	0.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	112	0	0	59	16	21.33	-	-	-	G	56468733	C	G	56468733	3	3	240	1	0	0	0	0	1	0	0	0	4818	928	32	2		2	DST	6	56468733	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25031	56468733	114646334	1652	20502										
DST	0	genome.wustl.edu	37	chr6	56471129	56471129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catactcttcctttcttcctCtccaactgccactgtcatca	2	17	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56471129	56471129	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.8198	p.R2733T	0.855	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	87	0	0	74	14	15.91	-	-	-	G	56471129	C	G	56471129	3	3	240	1	0	0	0	0	1	0	0	0	4818	928	32	2		2	DST	6	56471129	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2396	56471129	114643938	1653	20503										
DST	0	genome.wustl.edu	37	chr6	56472845	56472845	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataattttttagtttcttctGaggtctgagtagtgacaggt	10	4	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56472845	56472845	G	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	nonsense	c.6482	p.S2161*	0.792	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	66	0	0	48	15	23.81	-	-	-	C	56472845	G	C	56472845	4	2	240	1	0	0	0	0	0	1	0	0	4818	1305	45	2		2	DST	6	56472845	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1716	56472845	114642222	1654	20504										
DST	0	genome.wustl.edu	37	chr6	56489957	56489957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcatacttttattacctCttgaataatgagatctgctg	5	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	56489957	56489957	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.4729	p.E1577Q	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	145	0	0	98	38	27.94	-	-	-	G	56489957	C	G	56489957	3	3	240	1	0	0	0	0	1	0	0	0	4818	922	32	2	17194	2	DST	6	56489957	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17112	56489957	114625110	1655	20505										
BAG2	0	genome.wustl.edu	37	chr6	57048783	57048783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctctacagtgcatgttcatCtgaggtgccacatgggccag	12	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	57048783	57048783	C	G	SNP	BAG2	ENST00000370693	human	ensembl	69_37n	1	known	missense	c.431	p.S144C	1.000	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG2	HGNC	ENSG00000112208	81	0	0	68	29	29.9	-	-	-	G	57048783	C	G	57048783	3	3	240	1	0	0	0	0	1	0	0	0	1291	913	32	2	441	2	BAG2	6	57048783	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	558826	57048783	114066284	1656	20506										
PHF3	0	genome.wustl.edu	37	chr6	64394966	64394966	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgtgcctgaccaaaattCaaaacagttgaatgctatag	8	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	64394966	64394966	C	G	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	nonsense	c.1343	p.S448*	0.007	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	33	0	0	36	13	26.53	-	-	-	G	64394966	C	G	64394966	4	3	240	1	0	0	0	0	0	1	0	0	11910	838	29	2	1353	2	PHF3	6	64394966	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7346183	64394966	106720101	1657	20507										
EYS	0	genome.wustl.edu	37	chr6	64574130	64574130	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggcagaggcagacaatatCtgttccggattttggaacac	12	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	64574130	64574130	C	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.7177	p.D2393H	0.995	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	77	0	0	50	29	36.71	-	-	-	G	64574130	C	G	64574130	3	3	240	1	0	0	0	0	1	0	0	0	5369	913	32	2	2289	2	EYS	6	64574130	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	179164	64574130	106540937	1658	20508										
COL9A1	0	genome.wustl.edu	37	chr6	71003884	71003884	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttactggaacagaaacttGaggattatctgcaagttttc	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	71003884	71003884	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	nonsense	c.682	p.Q228*	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	82	0	0	47	31	39.74	-	-	-	A	71003884	G	A	71003884	4	1	240	1	0	0	0	0	0	1	0	0	3737	1299	45	2	2295	2	COL9A1	6	71003884	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6429754	71003884	100111183	1659	20509										
KCNQ5	0	genome.wustl.edu	37	chr6	73713683	73713683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgttttctaccatccctGagcacacaaaattggcctca	6	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	73713683	73713683	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.451	p.E151K	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	190	0	0	184	50	21.37	-	-	-	A	73713683	G	A	73713683	3	1	240	1	0	0	0	0	1	0	0	0	8140	1291	45	2	457	2	KCNQ5	6	73713683	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2709799	73713683	97401384	1660	20510										
KCNQ5	0	genome.wustl.edu	37	chr6	73904320	73904320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctgactatcaaagccctgTggatagcaaagatctttcgg	9	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	73904320	73904320	T	C	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.2012	p.V671A	0.950	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	80	0	0	37	35	48.61	-	-	-	C	73904320	T	C	73904320	3	2	240	1	0	0	0	0	1	0	0	0	8140	1696	59	5	2097	5	KCNQ5	6	73904320	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	190637	73904320	97210747	1661	20511										
MTO1	0	genome.wustl.edu	37	chr6	74201994	74201994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtatgaggaagttgacatgGattcattagccaaggctgtt	12	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	74201994	74201994	G	T	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.1795	p.D599Y	0.923	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	100	0	0	64	10	13.51	-	-	-	T	74201994	G	T	74201994	3	4	240	1	0	0	0	0	1	0	0	0	10025	1174	41	2	1916	2	MTO1	6	74201994	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	297674	74201994	96913073	1662	20512										
CD109	0	genome.wustl.edu	37	chr6	74472525	74472525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaaatgtaatggattcttCaaatggactttctgaatacc	7	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	74472525	74472525	C	T	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.917	p.S306L	0.174	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	135	0	0	53	49	48.04	-	-	-	T	74472525	C	T	74472525	3	4	240	1	0	0	0	0	1	0	0	0	2992	838	29	2	951	2	CD109	6	74472525	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	270531	74472525	96642542	1663	20513										
CD109	0	genome.wustl.edu	37	chr6	74512982	74512982	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatcagagggaagatggctCtttcagtgcttttgggaatt	12	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	74512982	74512982	C	G	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.2918	p.S973C	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	184	0	0	103	47	31.33	-	-	-	G	74512982	C	G	74512982	3	3	240	1	0	0	0	0	1	0	0	0	2992	913	32	2	3012	2	CD109	6	74512982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40457	74512982	96602085	1664	20514										
CD109	0	genome.wustl.edu	37	chr6	74524785	74524785	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaagaagcctttgatttaGatgttgctgtaaaagaaaat	8	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	74524785	74524785	G	C	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.3850	p.D1284H	1.000	superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	117	0	0	78	19	19.59	-	-	-	C	74524785	G	C	74524785	3	2	240	1	0	0	0	0	1	0	0	0	2992	942	33	2	3968	2	CD109	6	74524785	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11803	74524785	96590282	1665	20515										
COL12A1	0	genome.wustl.edu	37	chr6	75828832	75828832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgtgaccacaaccaacacCttagggacattcttcctcat	5	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	75828832	75828832	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.7281	p.K2427N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	101	0	0	67	25	27.17	-	-	-	A	75828832	C	A	75828832	3	1	240	1	0	0	0	0	1	0	0	0	3699	680	24	4	1994	4	COL12A1	6	75828832	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1304047	75828832	95286235	1666	20516										
COL12A1	0	genome.wustl.edu	37	chr6	75861682	75861682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgagcacaccaatttttcGagctcgaggtctcatgccag	9	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	75861682	75861682	G	T	SNP	COL12A1	ENST00000419671	human	ensembl	69_37n	-1	novel	nonsense	c.125	p.S42*	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon	COL12A1	HGNC	ENSG00000111799	89	0	0	88	35	28.46	-	-	-	T	75861682	G	T	75861682	4	4	240	1	0	0	0	0	0	1	0	0	3699	1066	37	3	5478	3	COL12A1	6	75861682	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	32850	75861682	95253385	1667	20517										
COL12A1	0	genome.wustl.edu	37	chr6	75866204	75866204	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcattgtgttttctgtttCttcatctactttcagggttt	6	8	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	75866204	75866204	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.3019	p.E1007K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	260	0	0	194	69	26.24	-	-	-	T	75866204	C	T	75866204	3	4	240	1	0	0	0	0	1	0	0	0	3699	922	32	2	6380	2	COL12A1	6	75866204	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4522	75866204	95248863	1668	20518										
IMPG1	0	genome.wustl.edu	37	chr6	76640746	76640746	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggcctggttccagaccgtCcaggctcccctggctgtcat	12	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	76640746	76640746	C	G	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.2167	p.D723H	0.044	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	67	0	0	47	20	29.85	-	-	-	G	76640746	C	G	76640746	3	3	240	1	0	0	0	0	1	0	0	0	7782	855	30	2	238	2	IMPG1	6	76640746	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	774542	76640746	94474321	1669	20519										
IRAK1BP1	0	genome.wustl.edu	37	chr6	79577322	79577322	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaaaagacccctccgacccGagtgttcgtggaactggttc	11	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	79577322	79577322	G	C	SNP	IRAK1BP1	ENST00000369940	human	ensembl	69_37n	1	known	missense	c.29	p.R10P	0.987	NULL	pfam_DUF541	-	no_errors	IRAK1BP1	HGNC	ENSG00000146243	17	0	0	15	6	28.57	-	-	-	C	79577322	G	C	79577322	3	2	240	1	0	0	0	0	1	0	0	0	7876	1058	37	3	31	3	IRAK1BP1	6	79577322	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2936576	79577322	91537745	1670	20520										
ELOVL4	0	genome.wustl.edu	37	chr6	80656978	80656978	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttaggacactacccggctCcgagtccaggagccccatcg	11	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	80656978	80656978	C	G	SNP	ELOVL4	ENST00000369816	human	ensembl	69_37n	-1	known	missense	c.19	p.E7Q	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402	24	0	0	15	5	25	-	-	-	G	80656978	C	G	80656978	3	3	240	1	0	0	0	0	1	0	0	0	5113	864	30	2	949	2	ELOVL4	6	80656978	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1079656	80656978	90458089	1671	20521										
DOPEY1	0	genome.wustl.edu	37	chr6	83863761	83863761	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggatgcctcttgtgttaatCagtaagttgccctcttattt	8	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	83863761	83863761	C	A	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.6388	p.H2130N	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	193	0	0	130	39	23.08	-	-	-	A	83863761	C	A	83863761	3	1	240	1	0	0	0	0	1	0	0	0	4742	840	29	2	6506	2	DOPEY1	6	83863761	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3206783	83863761	87251306	1672	20522										
SNAP91	0	genome.wustl.edu	37	chr6	84368766	84368766	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctgtagtattggcatactCtttagcagcttttcgggagc	10	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	84368766	84368766	C	G	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.498	p.K166N	1.000	pfam_ANTH	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	116	0	0	106	24	18.18	-	-	-	G	84368766	C	G	84368766	3	3	240	1	0	0	0	0	1	0	0	0	14922	912	32	2	2317	2	SNAP91	6	84368766	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	505005	84368766	86746301	1673	20523										
SNX14	0	genome.wustl.edu	37	chr6	86243395	86243395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccttcctttcagaggaggGatcctcaaaaaagtctacat	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	86243395	86243395	G	T	SNP	SNX14	ENST00000314673	human	ensembl	69_37n	-1	known	missense	c.1732	p.P578T	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX14	HGNC	ENSG00000135317	57	0	0	50	14	21.88	-	-	-	T	86243395	G	T	86243395	3	4	240	1	0	0	0	0	1	0	0	0	14974	1174	41	2	1156	2	SNX14	6	86243395	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1874629	86243395	84871672	1674	20524										
SNX14	0	genome.wustl.edu	37	chr6	86253353	86253353	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttctacaatgaagggatCaaatctaattttgtcaatac	5	8	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	86253353	86253353	C	G	SNP	SNX14	ENST00000314673	human	ensembl	69_37n	-1	known	missense	c.1234	p.D412H	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX14	HGNC	ENSG00000135317	45	0	0	29	8	21.62	-	-	-	G	86253353	C	G	86253353	3	3	240	1	0	0	0	0	1	0	0	0	14974	826	29	2	1674	2	SNX14	6	86253353	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9958	86253353	84861714	1675	20525										
HTR1E	0	genome.wustl.edu	37	chr6	87725863	87725863	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatcccccccttcgacaatGatctagatcacccaggagaa	8	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	87725863	87725863	G	A	SNP	HTR1E	ENST00000305344	human	ensembl	69_37n	1	known	missense	c.811	p.D271N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HTR1E	HGNC	ENSG00000168830	105	0	0	60	58	49.15	-	-	-	A	87725863	G	A	87725863	3	1	240	1	0	0	0	0	1	0	0	0	7493	1290	45	2	813	2	HTR1E	6	87725863	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1472510	87725863	83389204	1676	20526										
ZNF292	0	genome.wustl.edu	37	chr6	87967251	87967251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcattattcctcacagattGaaggaaacactaattcctcc	4	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	87967251	87967251	G	C	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.3904	p.E1302Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	60	0	0	45	19	29.69	-	-	-	C	87967251	G	C	87967251	3	2	240	1	0	0	0	0	1	0	0	0	17922	1291	45	2	3934	2	ZNF292	6	87967251	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	241388	87967251	83147816	1677	20527										
ZNF292	0	genome.wustl.edu	37	chr6	87968832	87968832	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagtaacattcctcagtctGaagtatcacataaggaggat	8	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	87968832	87968832	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.5485	p.E1829K	0.992	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	28	0	0	12	7	36.84	-	-	-	A	87968832	G	A	87968832	3	1	240	1	0	0	0	0	1	0	0	0	17922	1291	45	2	5515	2	ZNF292	6	87968832	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1581	87968832	83146235	1678	20528										
ZNF292	0	genome.wustl.edu	37	chr6	87970159	87970159	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtatatatgcaacccggtCgaatctcctccgacacattt	6	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	87970159	87970159	C	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	nonsense	c.6812	p.S2271*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	67	0	0	31	8	20.51	-	-	-	A	87970159	C	A	87970159	4	1	240	1	0	0	0	0	0	1	0	0	17922	893	31	3	6842	3	ZNF292	6	87970159	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1327	87970159	83144908	1679	20529										
PM20D2	0	genome.wustl.edu	37	chr6	89859062	89859062	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcaggggcttttacaaatCttgatgttgtttttatggcc	10	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	89859062	89859062	C	G	SNP	PM20D2	ENST00000275072	human	ensembl	69_37n	1	known	missense	c.544	p.L182V	1.000	pfam_Peptidase_M20,pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281	125	0	0	66	24	26.67	-	-	-	G	89859062	C	G	89859062	3	3	240	1	0	0	0	0	1	0	0	0	12203	913	32	2	550	2	PM20D2	6	89859062	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1888903	89859062	81256005	1680	20530										
PM20D2	0	genome.wustl.edu	37	chr6	89859097	89859097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcccacccatcacaagaGaatgctgcttatctaccaga	7	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	89859097	89859097	G	C	SNP	PM20D2	ENST00000275072	human	ensembl	69_37n	1	known	missense	c.579	p.E193D	1.000	pfam_Peptidase_M20,pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281	114	0	0	85	19	18.27	-	-	-	C	89859097	G	C	89859097	3	2	240	1	0	0	0	0	1	0	0	0	12203	933	33	2	585	2	PM20D2	6	89859097	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35	89859097	81255970	1681	20531										
MDN1	0	genome.wustl.edu	37	chr6	90392967	90392967	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcaaaaagtcaggctgttCttccttgtcactctccacca	8	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90392967	90392967	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.11986	p.E3996Q	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	71	0	0	67	16	19.28	-	-	-	G	90392967	C	G	90392967	3	3	240	1	0	0	0	0	1	0	0	0	9486	922	32	2	4924	2	MDN1	6	90392967	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	533870	90392967	80722100	1682	20532										
MDN1	0	genome.wustl.edu	37	chr6	90400419	90400419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagggggaactgttttctGaactcccgttcttcctcctc	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90400419	90400419	G	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.10722	p.F3574L	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	81	0	0	67	16	19.28	-	-	-	T	90400419	G	T	90400419	3	4	240	1	0	0	0	0	1	0	0	0	9486	1281	45	2	6224	2	MDN1	6	90400419	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7452	90400419	80714648	1683	20533										
MDN1	0	genome.wustl.edu	37	chr6	90405449	90405449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcccacgctgggctggctCaggcaggctcctcttactct	11	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90405449	90405449	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.9646	p.E3216Q	0.632	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	23	0	0	19	12	38.71	-	-	-	G	90405449	C	G	90405449	3	3	240	1	0	0	0	0	1	0	0	0	9486	835	29	2	7312	2	MDN1	6	90405449	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5030	90405449	80709618	1684	20534										
MDN1	0	genome.wustl.edu	37	chr6	90409323	90409323	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttattgtgatttttaccttCtgatgatgcagcaaggacca	8	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90409323	90409323	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.8994	p.Q2998	0.023	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	111	0	0	65	18	21.69	-	-	-	T	90409323	C	T	90409323	2	4	240	1	0	0	0	0	0	0	0	1	9486	912	32	2		2	MDN1	6	90409323	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3874	90409323	80705744	1685	20535										
MDN1	0	genome.wustl.edu	37	chr6	90442382	90442382	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcctcccccattttgttCatgaagttaacccaggacag	7	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90442382	90442382	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.4836	p.M1612I	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	99	0	0	83	31	27.19	-	-	-	T	90442382	C	T	90442382	3	4	240	1	0	0	0	0	1	0	0	0	9486	826	29	2	12230	2	MDN1	6	90442382	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33059	90442382	80672685	1686	20536										
MDN1	0	genome.wustl.edu	37	chr6	90461177	90461177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacaactcggactatatctCtcaggttcagcttcacagaa	7	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90461177	90461177	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.3200	p.R1067T	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	90	0	0	79	28	26.17	-	-	-	G	90461177	C	G	90461177	3	3	240	1	0	0	0	0	1	0	0	0	9486	913	32	2	13910	2	MDN1	6	90461177	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18795	90461177	80653890	1687	20537										
CASP8AP2	0	genome.wustl.edu	37	chr6	90573820	90573820	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttacaccactggttgagAgtaagtcgtgtcatctggag	12	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90573820	90573820	A	C	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	82	0	0	50	19	27.54	-	-	-	C	90573820	A	C	90573820	1	2	240	0	1	0	0	0	0	0	0	0	2703	304	11	5		5	CASP8AP2	6	90573820	RNA	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	112643	90573820	80541247	1688	20538										
CASP8AP2	0	genome.wustl.edu	37	chr6	90575899	90575899	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagagtgtcagctgatgtgCggaagtcaaagactatccca	12	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	90575899	90575899	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	39	0	0	37	8	17.78	-	-	-	T	90575899	C	T	90575899	1	4	240	0	1	0	0	0	0	0	0	0	2703	759	27	1		1	CASP8AP2	6	90575899	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2079	90575899	80539168	1689	20539										
EPHA7	0	genome.wustl.edu	37	chr6	93973611	93973611	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttcatcgccttcttggtCagctttgctataaccacagt	6	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	93973611	93973611	C	T	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	missense	c.1765	p.D589N	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	162	0	0	103	23	18.25	-	-	-	T	93973611	C	T	93973611	3	4	240	1	0	0	0	0	1	0	0	0	5209	826	29	2	1267	2	EPHA7	6	93973611	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3397712	93973611	77141456	1690	20540										
POU3F2	0	genome.wustl.edu	37	chr6	99283859	99283859	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgtcaagggggctctggaGagccatttcctcaaatgccc	12	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	99283859	99283859	G	T	SNP	POU3F2	ENST00000328345	human	ensembl	69_37n	1	known	missense	c.1110	p.E370D	1.000	pirsf_Transcription_factor_POU,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486	33	0	0	29	15	34.09	-	-	-	T	99283859	G	T	99283859	3	4	240	1	0	0	0	0	1	0	0	0	12348	933	33	2	1112	2	POU3F2	6	99283859	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5310248	99283859	71831208	1691	20541										
FBXL4	0	genome.wustl.edu	37	chr6	99328466	99328466	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgaggtgctgaagctctGaacagaagttcaaaatgctg	11	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	99328466	99328466	G	A	SNP	FBXL4	ENST00000229971	human	ensembl	69_37n	-1	known	missense	c.1352	p.S451L	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL4	HGNC	ENSG00000112234	73	0	0	42	17	28.81	-	-	-	A	99328466	G	A	99328466	3	1	240	1	0	0	0	0	1	0	0	0	5767	1294	45	2	525	2	FBXL4	6	99328466	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44607	99328466	71786601	1692	20542										
MCHR2	0	genome.wustl.edu	37	chr6	100382336	100382336	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataaaattaaaatatagcaCaccaaaatcaagggtagagg	7	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	100382336	100382336	C	T	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	silent	c.645	p.V215	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	127	0	0	74	18	19.57	-	-	-	T	100382336	C	T	100382336	2	4	240	1	0	0	0	0	0	0	0	1	9454	465	17	4		4	MCHR2	6	100382336	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1053870	100382336	70732731	1693	20543										
HACE1	0	genome.wustl.edu	37	chr6	105243507	105243507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagcaaggcttgttagaatCtttaggtactggctttcact	9	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	105243507	105243507	C	G	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	missense	c.870	p.K290N	1.000	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	152	0	0	100	28	21.88	-	-	-	G	105243507	C	G	105243507	3	3	240	1	0	0	0	0	1	0	0	0	6991	912	32	2	1919	2	HACE1	6	105243507	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4861171	105243507	65871560	1694	20544										
PRDM1	0	genome.wustl.edu	37	chr6	106552744	106552744	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccgagcactgagaaaaatGaactctgcccaaagaatgtc	8	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	106552744	106552744	G	A	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	1.000	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	61	0	0	54	20	27.03	-	-	-	A	106552744	G	A	106552744	3	1	240	1	0	0	0	0	1	0	0	0	12531	1291	45	2	740	2	PRDM1	6	106552744	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1309237	106552744	64562323	1695	20545										
SCML4	0	genome.wustl.edu	37	chr6	108093437	108093437	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctggtaaagagccagctGaagcagaataaaggttatga	12	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	108093437	108093437	G	A	SNP	SCML4	ENST00000369020	human	ensembl	69_37n	-1	novel	missense	c.95	p.S32L	0.939	NULL	pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM	-	no_errors	SCML4	HGNC	ENSG00000146285	117	0	0	108	40	27.03	-	-	-	A	108093437	G	A	108093437	3	1	240	1	0	0	0	0	1	0	0	0	13999	1294	45	2	1177	2	SCML4	6	108093437	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1540693	108093437	63021630	1696	20546										
SEC63	0	genome.wustl.edu	37	chr6	108197773	108197773	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcttgatagttacctcctCtgtatctttcagcgtacaca	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	108197773	108197773	C	T	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	missense	c.2029	p.E677K	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	183	0	0	158	45	22.17	-	-	-	T	108197773	C	T	108197773	3	4	240	1	0	0	0	0	1	0	0	0	14093	922	32	2	265	2	SEC63	6	108197773	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	104336	108197773	62917294	1697	20547										
AKD1	0	genome.wustl.edu	37	chr6	109835625	109835625	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttcaactggcttgattgTctctccttcacttagctgca	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	109835625	109835625	T	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.4081	p.T1361P	0.028	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	142	0	0	80	23	22.33	-	-	-	G	109835625	T	G	109835625	3	3	240	1	0	0	0	0	1	0	0	0	460	1667	58	5	1694	5	AKD1	6	109835625	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1637852	109835625	61279442	1698	20548										
AKD1	0	genome.wustl.edu	37	chr6	109871307	109871307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcaccttcaatggttcttCatgagccacataatcctcag	5	13	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	109871307	109871307	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.2950	p.E984K	0.001	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	88	0	0	86	18	17.31	-	-	-	T	109871307	C	T	109871307	3	4	240	1	0	0	0	0	1	0	0	0	460	835	29	2	2853	2	AKD1	6	109871307	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	35682	109871307	61243760	1699	20549										
AKD1	0	genome.wustl.edu	37	chr6	109940391	109940391	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtattttctactaatgtttCacgggctttatcaaaacgtg	8	7	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	109940391	109940391	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.1303	p.E435K	0.558	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	155	0	0	89	28	23.93	-	-	-	T	109940391	C	T	109940391	3	4	240	1	0	0	0	0	1	0	0	0	460	835	29	2	4548	2	AKD1	6	109940391	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69084	109940391	61174676	1700	20550										
GTF3C6	0	genome.wustl.edu	37	chr6	111281801	111281801	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagggacctgtgttatatttGaagaaaatgttgaacatggt	11	3	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	111281801	111281801	G	A	SNP	GTF3C6	ENST00000329970	human	ensembl	69_37n	1	known	missense	c.229	p.E77K	1.000	pfam_TFIIIC_tau55-rel	pfam_TFIIIC_tau55-rel	-	no_errors	GTF3C6	HGNC	ENSG00000155115	200	0	0	160	44	21.57	-	-	-	A	111281801	G	A	111281801	3	1	240	1	0	0	0	0	1	0	0	0	6928	1291	45	2	243	2	GTF3C6	6	111281801	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1341410	111281801	59833266	1701	20551										
KIAA1919	0	genome.wustl.edu	37	chr6	111587262	111587262	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgcactcaaccaatcatCtgatgctgactcagaagctc	6	14	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	111587262	111587262	C	G	SNP	KIAA1919	ENST00000368847	human	ensembl	69_37n	1	known	missense	c.497	p.S166C	0.539	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	113	0	0	84	26	23.64	-	-	-	G	111587262	C	G	111587262	3	3	240	1	0	0	0	0	1	0	0	0	8314	913	32	2	511	2	KIAA1919	6	111587262	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	305461	111587262	59527805	1702	20552										
REV3L	0	genome.wustl.edu	37	chr6	111695066	111695066	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggtttgtgaaattgcttCtgataacgacctcggtttta	9	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	111695066	111695066	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.4492	p.E1498K	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	105	0	0	89	38	29.92	-	-	-	T	111695066	C	T	111695066	3	4	240	1	0	0	0	0	1	0	0	0	13323	922	32	2	4980	2	REV3L	6	111695066	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	107804	111695066	59420001	1703	20553										
REV3L	0	genome.wustl.edu	37	chr6	111696334	111696334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaccgttttttcctgaaaGacaaagttcttttaatattt	6	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	111696334	111696334	G	A	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.3224	p.S1075F	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	183	0	0	121	33	21.43	-	-	-	A	111696334	G	A	111696334	3	1	240	1	0	0	0	0	1	0	0	0	13323	942	33	2	6248	2	REV3L	6	111696334	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1268	111696334	59418733	1704	20554										
WISP3	0	genome.wustl.edu	37	chr6	112389545	112389545	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaactgtgaaatgagaaaaGagaaaagactgtgttacatt	10	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	112389545	112389545	G	C	SNP	WISP3	ENST00000361714	human	ensembl	69_37n	1	known	missense	c.781	p.E261Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761	71	0	0	38	21	35.59	-	-	-	C	112389545	G	C	112389545	3	2	240	1	0	0	0	0	1	0	0	0	17471	943	33	2	795	2	WISP3	6	112389545	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	693211	112389545	58725522	1705	20555										
LAMA4	0	genome.wustl.edu	37	chr6	112435312	112435312	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaaacacaggctccctgtGatcaattggttttggattca	8	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	112435312	112435312	G	T	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.5293	p.H1765N	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	105	0	0	70	18	20.45	-	-	-	T	112435312	G	T	112435312	3	4	240	1	0	0	0	0	1	0	0	0	8662	1290	45	2	186	2	LAMA4	6	112435312	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45767	112435312	58679755	1706	20556										
LAMA4	0	genome.wustl.edu	37	chr6	112441616	112441616	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcattctcttcttgatctGagacatagaagatcatgcca	7	9	5	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	112441616	112441616	G	C	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	nonsense	c.4535	p.S1512*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	83	0	0	58	14	19.44	-	-	-	C	112441616	G	C	112441616	4	2	240	1	0	0	0	0	0	1	0	0	8662	1294	45	2	964	2	LAMA4	6	112441616	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6304	112441616	58673451	1707	20557										
LAMA4	0	genome.wustl.edu	37	chr6	112450267	112450267	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatcttcaacctccacatCtctatccaccctgtgtttgt	4	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	112450267	112450267	C	G	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.4144	p.D1382H	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	72	0	0	60	26	30.23	-	-	-	G	112450267	C	G	112450267	3	3	240	1	0	0	0	0	1	0	0	0	8662	913	32	2	1363	2	LAMA4	6	112450267	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8651	112450267	58664800	1708	20558										
LAMA4	0	genome.wustl.edu	37	chr6	112528278	112528278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaattggggtgctcccctGatggaatctccgatataacc	10	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	112528278	112528278	G	C	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.366	p.I122M	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	32	0	0	27	8	22.86	-	-	-	C	112528278	G	C	112528278	3	2	240	1	0	0	0	0	1	0	0	0	8662	1280	45	2	5249	2	LAMA4	6	112528278	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	78011	112528278	58586789	1709	20559										
TSPYL4	0	genome.wustl.edu	37	chr6	116574844	116574844	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccatttttctggctgctgtCagcagcctcggcggcagagg	14	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	116574844	116574844	C	T	SNP	TSPYL4	ENST00000420283	human	ensembl	69_37n	-1	known	missense	c.328	p.D110N	0.179	NULL	pfam_NAP_family	-	no_errors	TSPYL4	HGNC	ENSG00000187189	22	0	0	27	11	28.95	-	-	-	T	116574844	C	T	116574844	3	4	240	1	0	0	0	0	1	0	0	0	16757	826	29	2	920	2	TSPYL4	6	116574844	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4046566	116574844	54540223	1710	20560										
DSE	0	genome.wustl.edu	37	chr6	116720662	116720662	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgatgctgtccagccccttGgaatacctccctccctggga	9	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	116720662	116720662	G	C	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.306	p.L102F	1.000	superfamily_Chondroitin_lyas	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	28	0	0	27	7	20.59	-	-	-	C	116720662	G	C	116720662	3	2	240	1	0	0	0	0	1	0	0	0	4809	1339	47	4	251	4	DSE	6	116720662	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145818	116720662	54394405	1711	20561										
DSE	0	genome.wustl.edu	37	chr6	116752196	116752196	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtcttgctcagggaggtGacggatggctccctctatga	14	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	116752196	116752196	G	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	silent	c.807	p.V269	1.000	superfamily_Chondroitin_lyas	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	120	0	0	70	31	30.69	-	-	-	A	116752196	G	A	116752196	2	1	240	1	0	0	0	0	0	0	0	1	4809	1277	45	2		2	DSE	6	116752196	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31534	116752196	54362871	1712	20562										
KPNA5	0	genome.wustl.edu	37	chr6	117037438	117037438	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatgccgtgtgggccctctCaaatttatgtagaggcaaaa	10	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	117037438	117037438	C	G	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	nonsense	c.713	p.S238*	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	105	0	0	64	15	18.99	-	-	-	G	117037438	C	G	117037438	4	3	240	1	0	0	0	0	0	1	0	0	8486	838	29	2	743	2	KPNA5	6	117037438	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	285242	117037438	54077629	1713	20563										
GPRC6A	0	genome.wustl.edu	37	chr6	117127879	117127879	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaagaggatatattccctCttctaaaggcaaaccctaca	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	117127879	117127879	C	T	SNP	GPRC6A	ENST00000310357	human	ensembl	69_37n	-1	known	missense	c.989	p.R330K	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_vmron_rcpt_2	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	73	0	0	49	20	28.99	-	-	-	T	117127879	C	T	117127879	3	4	240	1	0	0	0	0	1	0	0	0	6779	913	32	2	1807	2	GPRC6A	6	117127879	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	90441	117127879	53987188	1714	20564										
ROS1	0	genome.wustl.edu	37	chr6	117724314	117724314	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccatacctccatgaggatGagtcctgtaactgggacttg	10	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	117724314	117724314	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.565	p.H189Y	0.997	superfamily_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	48	0	0	52	14	21.21	-	-	-	A	117724314	G	A	117724314	3	1	240	1	0	0	0	0	1	0	0	0	13617	1290	45	2	6630	2	ROS1	6	117724314	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	596435	117724314	53390753	1715	20565										
SMPDL3A	0	genome.wustl.edu	37	chr6	123130490	123130490	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcagatttgtgcaattatGaatcttgataatatttccta	5	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	123130490	123130490	G	A	SNP	SMPDL3A	ENST00000368440	human	ensembl	69_37n	1	known	missense	c.1299	p.M433I	1.000	pirsf_ASM-like_Pdiesterase_prd	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3A	HGNC	ENSG00000172594	41	0	0	32	7	17.95	-	-	-	A	123130490	G	A	123130490	3	1	240	1	0	0	0	0	1	0	0	0	14897	1290	45	2	1329	2	SMPDL3A	6	123130490	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5406176	123130490	47984577	1716	20566										
RNF217	0	genome.wustl.edu	37	chr6	125366417	125366417	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgttttgaattcttggaaGaaacaactgttgtctataac	8	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	125366417	125366417	G	A	SNP	RNF217	ENST00000560949	human	ensembl	69_37n	1	known	missense	c.238	p.E80K	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373	100	0	0	51	17	25	-	-	-	A	125366417	G	A	125366417	3	1	240	1	0	0	0	0	1	0	0	0	13567	943	33	2	73	2	RNF217	6	125366417	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2235927	125366417	45748650	1717	20567										
ECHDC1	0	genome.wustl.edu	37	chr6	127648182	127648182	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatttcacagcattcagatCagatcctgaagagaaagtat	8	7	3	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	127648182	127648182	C	G	SNP	ECHDC1	ENST00000531967	human	ensembl	69_37n	-1	known	missense	c.346	p.D116H	0.998	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC1	HGNC	ENSG00000093144	88	0	0	72	10	12.2	-	-	-	G	127648182	C	G	127648182	3	3	240	1	0	0	0	0	1	0	0	0	4928	826	29	2	593	2	ECHDC1	6	127648182	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2281765	127648182	43466885	1718	20568										
KIAA0408	0	genome.wustl.edu	37	chr6	127768223	127768223	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctactgctctctgctactGaggagctacagtcattactt	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	127768223	127768223	G	A	SNP	KIAA0408	ENST00000483725	human	ensembl	69_37n	-1	novel	missense	c.1241	p.S414L	0.000	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367	48	0	0	35	6	14.63	-	-	-	A	127768223	G	A	127768223	3	1	240	1	0	0	0	0	1	0	0	0	8226	1294	45	2	851	2	KIAA0408	6	127768223	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	120041	127768223	43346844	1719	20569										
LAMA2	0	genome.wustl.edu	37	chr6	129465144	129465144	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatattcgcctgagatttcaGaggatccgcacactgaatgc	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	129465144	129465144	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	silent	c.738	p.Q246	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	92	0	0	71	19	21.11	-	-	-	A	129465144	G	A	129465144	2	1	240	1	0	0	0	0	0	0	0	1	8660	933	33	2		2	LAMA2	6	129465144	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1696921	129465144	41649923	1720	20570										
ARHGAP18	0	genome.wustl.edu	37	chr6	129955247	129955247	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcgattcagtgccacctgGagcctaaacatagaaaacag	9	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	129955247	129955247	G	C	SNP	ARHGAP18	ENST00000275189	human	ensembl	69_37n	-1	known	missense	c.556	p.P186A	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	119	0	0	94	26	21.67	-	-	-	C	129955247	G	C	129955247	3	2	240	1	0	0	0	0	1	0	0	0	870	1174	41	2	1483	2	ARHGAP18	6	129955247	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	490103	129955247	41159820	1721	20571										
ENPP1	0	genome.wustl.edu	37	chr6	132195445	132195445	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatattgtggaagtggatttCatggctctgacaatgtattt	10	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	132195445	132195445	C	A	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.1603	p.H535N	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	103	0	0	61	15	19.74	-	-	-	A	132195445	C	A	132195445	3	1	240	1	0	0	0	0	1	0	0	0	5166	826	29	2	1665	2	ENPP1	6	132195445	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2240198	132195445	38919622	1722	20572										
MOXD1	0	genome.wustl.edu	37	chr6	132645114	132645114	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaccctcagactggaactCaggcatccctggagggatgg	14	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	132645114	132645114	C	T	SNP	MOXD1	ENST00000367963	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357K	0.983	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931	52	0	0	54	24	30.77	-	-	-	T	132645114	C	T	132645114	3	4	240	1	0	0	0	0	1	0	0	0	9792	835	29	2	796	2	MOXD1	6	132645114	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	449669	132645114	38469953	1723	20573										
TAAR1	0	genome.wustl.edu	37	chr6	132966222	132966222	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttttctaaaccaaggataGaaaaatgcataaaccattgg	7	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	132966222	132966222	G	T	SNP	TAAR1	ENST00000275216	human	ensembl	69_37n	-1	known	missense	c.921	p.F307L	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trac_amin_rcpt_1,prints_Trace_amine_rcpt	-	no_errors	TAAR1	HGNC	ENSG00000146399	32	0	0	29	7	19.44	-	-	-	T	132966222	G	T	132966222	3	4	240	1	0	0	0	0	1	0	0	0	15581	933	33	2	102	2	TAAR1	6	132966222	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	321108	132966222	38148845	1724	20574										
SLC2A12	0	genome.wustl.edu	37	chr6	134350155	134350155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgcatgttgtcttttgaacGaaacagatcccaaaaactgt	7	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	134350155	134350155	G	A	SNP	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	missense	c.808	p.R270C	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	71	0	0	54	23	29.87	-	-	-	A	134350155	G	A	134350155	3	1	240	1	0	0	0	0	1	0	0	0	14630	1058	37	1	1061	1	SLC2A12	6	134350155	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1383933	134350155	36764912	1725	20575										
HBS1L	0	genome.wustl.edu	37	chr6	135308808	135308808	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccattttattaactgcaactGcaagctgcgtcactcccaga	6	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	135308808	135308808	G	A	SNP	HBS1L	ENST00000529169	human	ensembl	69_37n	-1	putative	nonsense	c.76	p.Q26*	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,superfamily_Transl_elong_init/rib_B-barrel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HBS1L	HGNC	ENSG00000112339	69	0	0	29	32	52.46	-	-	-	A	135308808	G	A	135308808	4	1	240	1	0	0	0	0	0	1	0	0	7038	1319	46	4	889	4	HBS1L	6	135308808	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	958653	135308808	35806259	1726	20576										
AHI1	0	genome.wustl.edu	37	chr6	135768202	135768202	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgactcttctaatccaggttCtgtgtctactgagcttgact	8	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	135768202	135768202	C	T	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.1723	p.E575K	0.943	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	165	0	0	132	30	18.52	-	-	-	T	135768202	C	T	135768202	3	4	240	1	0	0	0	0	1	0	0	0	413	922	32	2	1992	2	AHI1	6	135768202	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	459394	135768202	35346865	1727	20577										
BCLAF1	0	genome.wustl.edu	37	chr6	136589442	136589442	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtgatgctgaagaggatGaagatcgagaatgatcttgc	14	4	1	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	136589442	136589442	G	T	SNP	BCLAF1	ENST00000531224	human	ensembl	69_37n	-1	known	nonsense	c.2255	p.S752*	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	219	0	0	177	20	10.15	-	-	-	T	136589442	G	T	136589442	4	4	240	1	0	0	0	0	0	1	0	0	1387	1294	45	2	523	2	BCLAF1	6	136589442	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	821240	136589442	34525625	1728	20578										
MAP7	0	genome.wustl.edu	37	chr6	136667051	136667051	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggggcccaagtgtcccttCatcatcaaaggccaaaattg	9	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	136667051	136667051	C	T	SNP	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	missense	c.2248	p.E750K	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	77	0	0	51	12	19.05	-	-	-	T	136667051	C	T	136667051	3	4	240	1	0	0	0	0	1	0	0	0	9337	835	29	2	75	2	MAP7	6	136667051	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	77609	136667051	34448016	1729	20579										
MAP7	0	genome.wustl.edu	37	chr6	136710561	136710561	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccgctcctccttctgcctCtgctcctccaacctcttctt	3	21	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	136710561	136710561	C	T	SNP	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	silent	c.405	p.Q135	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	134	0	0	85	37	30.33	-	-	-	T	136710561	C	T	136710561	2	4	240	1	0	0	0	0	0	0	0	1	9337	912	32	2		2	MAP7	6	136710561	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43510	136710561	34404506	1730	20580										
MAP3K5	0	genome.wustl.edu	37	chr6	136901529	136901529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcttgatgttatgattccGaagaactttattgacctgga	10	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	136901529	136901529	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.3427	p.R1143W	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	117	0	0	72	24	24.74	-	-	-	A	136901529	G	A	136901529	3	1	240	1	0	0	0	0	1	0	0	0	9324	1057	37	1	721	1	MAP3K5	6	136901529	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	190968	136901529	34213538	1731	20581										
TNFAIP3	0	genome.wustl.edu	37	chr6	138196965	138196965	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagaaggccaatcattgtCatttcaggtgagatgcctgc	10	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	138196965	138196965	C	G	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	silent	c.627	p.V209	1.000	pfam_OTU,pfscan_OTU	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	58	0	0	54	17	23.94	-	-	-	G	138196965	C	G	138196965	2	3	240	1	0	0	0	0	0	0	0	1	16369	813	29	2		2	TNFAIP3	6	138196965	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1295436	138196965	32918102	1732	20582										
KIAA1244	0	genome.wustl.edu	37	chr6	138610956	138610956	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatgtctttctggcacagtGaaactaaaagtggagcagaa	10	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	138610956	138610956	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	silent	c.2898	p.V966	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	27	0	0	37	9	19.57	-	-	-	A	138610956	G	A	138610956	2	1	240	1	0	0	0	0	0	0	0	1	8269	1304	45	2		2	KIAA1244	6	138610956	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	413991	138610956	32504111	1733	20583										
ECT2L	0	genome.wustl.edu	37	chr6	139186270	139186270	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtaaggaagcagctgtatCctttcttcaaggaactgcag	10	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	139186270	139186270	C	G	SNP	ECT2L	ENST00000367682	human	ensembl	69_37n	1	known	missense	c.1429	p.P477A	0.658	NULL	pfam_DH-domain,pfam_F-box_dom_cyclin-like,superfamily_DH-domain,superfamily_F-box_dom_cyclin-like,smart_DH-domain,pfscan_DH-domain	-	no_errors	ECT2L	HGNC	ENSG00000203734	43	0	0	38	16	29.09	-	-	-	G	139186270	C	G	139186270	3	3	240	1	0	0	0	0	1	0	0	0	4937	855	30	2	1467	2	ECT2L	6	139186270	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	575314	139186270	31928797	1734	20584										
GPR126	0	genome.wustl.edu	37	chr6	142715042	142715042	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgtttttagttttcacctGagtgctggagaggacaagat	12	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	142715042	142715042	G	C	SNP	GPR126	ENST00000508295	human	ensembl	69_37n	1	putative	nonstop	c.95	p.*32S	0.005	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR126	HGNC	ENSG00000112414	207	0	0	126	32	20.25	-	-	-	C	142715042	G	C	142715042	4	2	240	1	0	0	0	0	0	0	0	0	6690	1277	45	2	1405	2	GPR126	6	142715042	Nonstop_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3528772	142715042	28400025	1735	20585										
PHACTR2	0	genome.wustl.edu	37	chr6	144086657	144086657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagagtttcaaactcgaacaGactgtccctggagctgagga	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	144086657	144086657	G	T	SNP	PHACTR2	ENST00000440869	human	ensembl	69_37n	1	known	missense	c.954	p.Q318H	0.017	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	61	0	0	57	16	21.92	-	-	-	T	144086657	G	T	144086657	3	4	240	1	0	0	0	0	1	0	0	0	11884	933	33	2	993	2	PHACTR2	6	144086657	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1371615	144086657	27028410	1736	20586										
UTRN	0	genome.wustl.edu	37	chr6	145148791	145148791	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatgatgacacccattcaaGaatagaacaatatgccacac	5	11	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	145148791	145148791	G	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.9578	p.R3193T	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	90	0	0	53	23	30.26	-	-	-	C	145148791	G	C	145148791	3	2	240	1	0	0	0	0	1	0	0	0	17200	942	33	2	9844	2	UTRN	6	145148791	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1062134	145148791	25966276	1737	20587										
FBXO30	0	genome.wustl.edu	37	chr6	146126299	146126299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggaggcccataggatcttCtgcaacttccaaatctgatg	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	146126299	146126299	C	T	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.1243	p.E415K	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	90	0	0	48	19	28.36	-	-	-	T	146126299	C	T	146126299	3	4	240	1	0	0	0	0	1	0	0	0	5786	922	32	2	1002	2	FBXO30	6	146126299	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	977508	146126299	24988768	1738	20588										
SHPRH	0	genome.wustl.edu	37	chr6	146275931	146275931	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccactgaaggatgactccacCagaatacccttgtcacaaat	6	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	146275931	146275931	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	silent	c.528	p.L176	0.618	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	124	0	0	95	35	26.92	-	-	-	T	146275931	C	T	146275931	2	4	240	1	0	0	0	0	0	0	0	1	14380	581	21	4		4	SHPRH	6	146275931	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	149632	146275931	24839136	1739	20589										
SHPRH	0	genome.wustl.edu	37	chr6	146276419	146276419	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctgcctcttttcctcatCtaccctcactggaggagcac	7	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	146276419	146276419	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.40	p.D14N	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	69	0	0	51	16	23.88	-	-	-	T	146276419	C	T	146276419	3	4	240	1	0	0	0	0	1	0	0	0	14380	913	32	2	5171	2	SHPRH	6	146276419	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	488	146276419	24838648	1740	20590										
GRM1	0	genome.wustl.edu	37	chr6	146720702	146720702	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatcattattgccaagcctGagaggaatgtccgcagtgcc	10	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	146720702	146720702	G	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.2527	p.E843K	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	35	0	0	33	13	28.26	-	-	-	A	146720702	G	A	146720702	3	1	240	1	0	0	0	0	1	0	0	0	6847	1291	45	2	2553	2	GRM1	6	146720702	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	444283	146720702	24394365	1741	20591										
LATS1	0	genome.wustl.edu	37	chr6	150001092	150001092	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatttaatatgaccatcacGatcaatcaaaatattatcag	3	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	150001092	150001092	G	C	SNP	LATS1	ENST00000253339	human	ensembl	69_37n	-1	known	missense	c.2512	p.R838G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS1	HGNC	ENSG00000131023	81	0	0	48	15	23.81	-	-	-	C	150001092	G	C	150001092	3	2	240	1	0	0	0	0	1	0	0	0	8700	1058	37	3	896	3	LATS1	6	150001092	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3280390	150001092	21113975	1742	20592										
LATS1	0	genome.wustl.edu	37	chr6	150005196	150005196	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccattctgcattccaggtctCcctgatggaaagttaaattt	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	150005196	150005196	C	T	SNP	LATS1	ENST00000253339	human	ensembl	69_37n	-1	known	silent	c.1029	p.G343	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS1	HGNC	ENSG00000131023	99	1	1	102	23	18.25	-	-	-	T	150005196	C	T	150005196	2	4	240	1	0	0	0	0	0	0	0	1	8700	842	30	2		2	LATS1	6	150005196	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4104	150005196	21109871	1743	20593										
NUP43	0	genome.wustl.edu	37	chr6	150067514	150067514	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctatcagcggcgatacctCattgtcccaagatcctgtag	8	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	150067514	150067514	C	A	SNP	NUP43	ENST00000340413	human	ensembl	69_37n	-1	known	nonsense	c.118	p.E40*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253	52	0	0	34	9	20.93	-	-	-	A	150067514	C	A	150067514	4	1	240	1	0	0	0	0	0	1	0	0	10838	835	29	2	1056	2	NUP43	6	150067514	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62318	150067514	21047553	1744	20594										
PLEKHG1	0	genome.wustl.edu	37	chr6	151153181	151153181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaaaagcagggtgtttatGatggctcggcagtacagtca	12	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	151153181	151153181	G	C	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.2934	p.M978I	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	60	0	0	26	10	27.78	-	-	-	C	151153181	G	C	151153181	3	2	240	1	0	0	0	0	1	0	0	0	12142	1290	45	2	2988	2	PLEKHG1	6	151153181	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1085667	151153181	19961886	1745	20595										
RMND1	0	genome.wustl.edu	37	chr6	151766927	151766927	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgagatctggccacggctCtgaggagtgtggctggcatt	16	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	151766927	151766927	C	T	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	missense	c.20	p.R7K	0.002	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	47	0	0	34	9	20.93	-	-	-	T	151766927	C	T	151766927	3	4	240	1	0	0	0	0	1	0	0	0	13482	913	32	2	1373	2	RMND1	6	151766927	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	613746	151766927	19348140	1746	20596										
C6orf211	0	genome.wustl.edu	37	chr6	151773702	151773702	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgtcgtcccggcgtctCtctcaggacaggacgtgggg	16	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	151773702	151773702	C	G	SNP	C6orf211	ENST00000367294	human	ensembl	69_37n	1	known	missense	c.22	p.L8V	0.150	NULL	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476	50	0	0	28	7	20	-	-	-	G	151773702	C	G	151773702	3	3	240	1	0	0	0	0	1	0	0	0	2375	913	32	2	24	2	C6orf211	6	151773702	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6775	151773702	19341365	1747	20597										
ESR1	0	genome.wustl.edu	37	chr6	152382234	152382234	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagaggagtttgtgtgcctCaaatctattattttgcttaa	10	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	152382234	152382234	C	G	SNP	ESR1	ENST00000427531	human	ensembl	69_37n	1	putative	nonsense	c.1058	p.S353*	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Oestr_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ESR1	HGNC	ENSG00000091831	142	0	0	113	27	19.29	-	-	-	G	152382234	C	G	152382234	4	3	240	1	0	0	0	0	0	1	0	0	5293	813	29	2	1366	2	ESR1	6	152382234	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	608532	152382234	18732833	1748	20598										
SYNE1	0	genome.wustl.edu	37	chr6	152720940	152720940	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgttgctttgttgactttGaagttctttttgtatatcct	8	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	152720940	152720940	G	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.7048	p.Q2350E	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	185	0	0	111	36	24.49	-	-	-	C	152720940	G	C	152720940	3	2	240	1	0	0	0	0	1	0	0	0	15537	1299	45	2	19814	2	SYNE1	6	152720940	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338706	152720940	18394127	1749	20599										
SYNE1	0	genome.wustl.edu	37	chr6	152832713	152832713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttgtactaaccggtgatCctctgtgcatggactgacat	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	152832713	152832713	C	A	SNP	SYNE1	ENST00000423061	human	ensembl	69_37n	-1	known	missense	c.323	p.G108V	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	81	0	0	50	18	26.09	-	-	-	A	152832713	C	A	152832713	3	1	240	1	0	0	0	0	1	0	0	0	15537	855	30	2	26728	2	SYNE1	6	152832713	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	111773	152832713	18282354	1750	20600										
TIAM2	0	genome.wustl.edu	37	chr6	155561807	155561807	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccgcctccgcaaagtcatCcaggagcttgtggacacaga	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	155561807	155561807	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	silent	c.3312	p.I1104	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	30	0	0	29	13	30.95	-	-	-	T	155561807	C	T	155561807	2	4	240	1	0	0	0	0	0	0	0	1	15986	845	30	2		2	TIAM2	6	155561807	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2729094	155561807	15553260	1751	20601										
TIAM2	0	genome.wustl.edu	37	chr6	155577920	155577920	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctactaaagacatcgaaattCagttccagagactgaggatt	8	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	155577920	155577920	C	A	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.4858	p.Q1620K	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	47	0	0	38	11	22.45	-	-	-	A	155577920	C	A	155577920	3	1	240	1	0	0	0	0	1	0	0	0	15986	827	29	2	4865	2	TIAM2	6	155577920	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16113	155577920	15537147	1752	20602										
SNX9	0	genome.wustl.edu	37	chr6	158359728	158359728	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagtaaaatcaccctacaaGacaaacagaacatggtgaag	7	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	158359728	158359728	G	C	SNP	SNX9	ENST00000392185	human	ensembl	69_37n	1	known	missense	c.1597	p.D533H	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX9	HGNC	ENSG00000130340	111	0	0	62	20	24.39	-	-	-	C	158359728	G	C	158359728	3	2	240	1	0	0	0	0	1	0	0	0	14998	942	33	2	1659	2	SNX9	6	158359728	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2781808	158359728	12755339	1753	20603										
SYNJ2	0	genome.wustl.edu	37	chr6	158517180	158517180	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcaccaccctaaactgttGaataacacttggctttctaa	4	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	158517180	158517180	G	C	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	missense	c.4275	p.L1425F	0.083	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	32	0	0	18	9	33.33	-	-	-	C	158517180	G	C	158517180	3	2	240	1	0	0	0	0	1	0	0	0	15545	1281	45	2	4381	2	SYNJ2	6	158517180	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	157452	158517180	12597887	1754	20604										
SERAC1	0	genome.wustl.edu	37	chr6	158569906	158569906	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggatatttaccagcaaatgGattccgcagtatcttggctg	10	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	158569906	158569906	G	C	SNP	SERAC1	ENST00000367104	human	ensembl	69_37n	-1	known	missense	c.346	p.P116A	0.052	NULL	pfam_PGAP1-like,superfamily_ARM-type_fold	-	no_errors	SERAC1	HGNC	ENSG00000122335	150	0	0	126	43	25.44	-	-	-	C	158569906	G	C	158569906	3	2	240	1	0	0	0	0	1	0	0	0	14162	1174	41	2	1670	2	SERAC1	6	158569906	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	52726	158569906	12545161	1755	20605										
SERAC1	0	genome.wustl.edu	37	chr6	158571560	158571560	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttttctcgttctaccacttGagtatctaatgtcacagcct	5	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	158571560	158571560	G	C	SNP	SERAC1	ENST00000367104	human	ensembl	69_37n	-1	known	missense	c.190	p.Q64E	0.920	NULL	pfam_PGAP1-like,superfamily_ARM-type_fold	-	no_errors	SERAC1	HGNC	ENSG00000122335	144	0	0	100	24	19.35	-	-	-	C	158571560	G	C	158571560	3	2	240	1	0	0	0	0	1	0	0	0	14162	1299	45	2	1830	2	SERAC1	6	158571560	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1654	158571560	12543507	1756	20606										
SYTL3	0	genome.wustl.edu	37	chr6	159184342	159184342	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttccctcttcagctgtctCactctgccagaccaacaaaa	5	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	159184342	159184342	C	T	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	silent	c.1524	p.L508	0.991	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	37	0	0	45	13	22.41	-	-	-	T	159184342	C	T	159184342	2	4	240	1	0	0	0	0	0	0	0	1	15576	813	29	2		2	SYTL3	6	159184342	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	612782	159184342	11930725	1757	20607										
TAGAP	0	genome.wustl.edu	37	chr6	159456960	159456960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttattcctctgcacggactCggagacggtcctcagcggga	12	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	159456960	159456960	C	T	SNP	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	missense	c.2095	p.E699K	0.073	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	39	0	0	43	16	27.12	-	-	-	T	159456960	C	T	159456960	3	4	240	1	0	0	0	0	1	0	0	0	15629	893	31	1	104	1	TAGAP	6	159456960	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	272618	159456960	11658107	1758	20608										
TAGAP	0	genome.wustl.edu	37	chr6	159457800	159457800	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctctggaaatgggtcttCagcctcctcactttccaaac	6	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	159457800	159457800	C	T	SNP	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	missense	c.1255	p.E419K	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	35	0	0	32	9	21.95	-	-	-	T	159457800	C	T	159457800	3	4	240	1	0	0	0	0	1	0	0	0	15629	835	29	2	944	2	TAGAP	6	159457800	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	840	159457800	11657267	1759	20609										
PNLDC1	0	genome.wustl.edu	37	chr6	160240034	160240034	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatcctcatcctcagcgtCaaaaggtggcctggggtcag	11	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	160240034	160240034	C	T	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	silent	c.1281	p.V427	0.000	NULL	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	85	0	0	54	19	26.03	-	-	-	T	160240034	C	T	160240034	2	4	240	1	0	0	0	0	0	0	0	1	12222	813	29	2		2	PNLDC1	6	160240034	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	782234	160240034	10875033	1760	20610										
PNLDC1	0	genome.wustl.edu	37	chr6	160240301	160240301	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagtgcgcggaacatcctGaaggagtaccgggaccaccc	14	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	160240301	160240301	G	T	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	silent	c.1416	p.L472	0.975	NULL	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	51	0	0	25	17	40.48	-	-	-	T	160240301	G	T	160240301	2	4	240	1	0	0	0	0	0	0	0	1	12222	1277	45	2		2	PNLDC1	6	160240301	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	267	160240301	10874766	1761	20611										
SLC22A2	0	genome.wustl.edu	37	chr6	160670411	160670411	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatctccgcccaacaaattCtgtaactgcagagagaattt	6	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	160670411	160670411	C	T	SNP	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	missense	c.679	p.E227K	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	60	0	0	40	15	27.27	-	-	-	T	160670411	C	T	160670411	3	4	240	1	0	0	0	0	1	0	0	0	14540	922	32	2	1020	2	SLC22A2	6	160670411	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	430110	160670411	10444656	1762	20612										
PLG	0	genome.wustl.edu	37	chr6	161135825	161135825	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttccttcccactctgtccaGaggaatgtatgcattgcagt	8	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	161135825	161135825	G	C	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	splice_site	c.548-1	e6-1	0.983	-	-	-	no_errors	PLG	HGNC	ENSG00000122194	62	0	0	44	11	20	-	-	-	C	161135825	G	C	161135825	5	2	240	1	0	0	0	0	0	0	1	0	12160	956	33	2	573	2	PLG	6	161135825	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	465414	161135825	9979242	1763	20613										
MAP3K4	0	genome.wustl.edu	37	chr6	161523001	161523001	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggtccctgagtcgtcactCaagccccacggaggagcgag	13	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	161523001	161523001	C	A	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	nonsense	c.3752	p.S1251*	0.087	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	85	0	0	48	20	29.41	-	-	-	A	161523001	C	A	161523001	4	1	240	1	0	0	0	0	0	1	0	0	9323	838	29	2	3822	2	MAP3K4	6	161523001	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	387176	161523001	9592066	1764	20614										
PDE10A	0	genome.wustl.edu	37	chr6	165957003	165957003	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttcagatacaaattcatCtaatacctgggggtgaagag	9	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	165957003	165957003	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.121	p.D41N	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	152	0	0	130	29	18.24	-	-	-	T	165957003	C	T	165957003	3	4	240	1	0	0	0	0	1	0	0	0	11703	913	32	2	2332	2	PDE10A	6	165957003	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4434002	165957003	5158064	1765	20615										
PDE10A	0	genome.wustl.edu	37	chr6	166075457	166075457	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggctcaggaagcactcggtCagccttcggaagcagctcgc	14	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	166075457	166075457	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	silent	c.45	p.L15	0.946	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	21	0	0	17	8	32	-	-	-	T	166075457	C	T	166075457	2	4	240	1	0	0	0	0	0	0	0	1	11703	813	29	2		2	PDE10A	6	166075457	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118454	166075457	5039610	1766	20616										
RNASET2	0	genome.wustl.edu	37	chr6	167366026	167366026	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataattagttttttccactCatggttgtcactgttaaaac	5	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	167366026	167366026	C	T	SNP	RNASET2	ENST00000476238	human	ensembl	69_37n	-1	known	missense	c.97	p.E33K	0.089	superfamily_RNase_T2-like	pfam_RNase_T2-like,superfamily_RNase_T2-like	-	no_errors	RNASET2	HGNC	ENSG00000026297	75	0	0	63	10	13.51	-	-	-	T	167366026	C	T	167366026	3	4	240	1	0	0	0	0	1	0	0	0	13504	835	29	2	705	2	RNASET2	6	167366026	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1290569	167366026	3749041	1767	20617										
TTLL2	0	genome.wustl.edu	37	chr6	167754302	167754302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacagcagcatcaataaatCcggggcctcttatgagaaga	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	167754302	167754302	C	T	SNP	TTLL2	ENST00000239587	human	ensembl	69_37n	1	known	missense	c.914	p.S305F	0.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC	ENSG00000120440	112	0	0	70	33	32.04	-	-	-	T	167754302	C	T	167754302	3	4	240	1	0	0	0	0	1	0	0	0	16824	855	30	2	924	2	TTLL2	6	167754302	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	388276	167754302	3360765	1768	20618										
MLLT4	0	genome.wustl.edu	37	chr6	168323592	168323592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacttggacaatatattttGaaggtgcagattatgaaagt	10	3	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	168323592	168323592	G	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.2944	p.E982Q	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	123	0	0	83	20	19.42	-	-	-	C	168323592	G	C	168323592	3	2	240	1	0	0	0	0	1	0	0	0	9700	1291	45	2	3026	2	MLLT4	6	168323592	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	569290	168323592	2791475	1769	20619										
MLLT4	0	genome.wustl.edu	37	chr6	168348607	168348607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agataacatctgtctctactGgaaacctctgcactgaggtc	8	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	168348607	168348607	G	A	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.3607	p.G1203R	0.999	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	53	0	0	44	10	18.52	-	-	-	A	168348607	G	A	168348607	3	1	240	1	0	0	0	0	1	0	0	0	9700	1349	47	4	3713	4	MLLT4	6	168348607	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25015	168348607	2766460	1770	20620										
THBS2	0	genome.wustl.edu	37	chr6	169626313	169626313	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggggcagttgtcacagtGatcccccacaccgtcaccat	10	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	169626313	169626313	G	T	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	missense	c.2500	p.H834N	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	96	0	0	55	31	36.05	-	-	-	T	169626313	G	T	169626313	3	4	240	1	0	0	0	0	1	0	0	0	15949	1290	45	2	1046	2	THBS2	6	169626313	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1277706	169626313	1488754	1771	20621										
THBS2	0	genome.wustl.edu	37	chr6	169648908	169648908	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatcttggtgatcttgctGaggtcatctgcgttcaccgg	12	9	5	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	6	169648908	169648908	G	A	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	silent	c.213	p.L71	0.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	92	0	0	66	21	24.14	-	-	-	A	169648908	G	A	169648908	2	1	240	1	0	0	0	0	0	0	0	1	15949	1277	45	2		2	THBS2	6	169648908	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22595	169648908	1466159	1772	20622										
GET4	0	genome.wustl.edu	37	chr7	933450	933450	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgggaccccatgtacaacGaggtgagagcttggggctgg	18	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	933450	933450	G	T	SNP	GET4	ENST00000265857	human	ensembl	69_37n	1	known	nonsense	c.820	p.E274*	1.000	pfam_UPF0363	pfam_UPF0363	-	no_errors	GET4	HGNC	ENSG00000239857	27	0	0	37	10	21.28	-	-	-	T	933450	G	T	933450	4	4	240	1	0	0	0	0	0	1	0	0	6388	1059	37	3	846	3	GET4	7	933450	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		933450	158205213	1773	20623										
GPER	0	genome.wustl.edu	37	chr7	1132068	1132068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcatcggcctgtgctactCcctcattgtccgggtgctgg	11	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	1132068	1132068	C	T	SNP	GPER	ENST00000297469	human	ensembl	69_37n	1	known	missense	c.704	p.S235F	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPER	HGNC	ENSG00000164850	24	0	0	24	7	22.58	-	-	-	T	1132068	C	T	1132068	3	4	240	1	0	0	0	0	1	0	0	0	6657	855	30	2	706	2	GPER	7	1132068	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	198618	1132068	158006595	1774	20624										
MICALL2	0	genome.wustl.edu	37	chr7	1482088	1482088	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcttcagttttgggctgaGaactgggaacagcggcagtg	16	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	1482088	1482088	G	C	SNP	MICALL2	ENST00000297508	human	ensembl	69_37n	-1	known	missense	c.1451	p.S484C	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL2	HGNC	ENSG00000164877	61	0	0	63	24	27.59	-	-	-	C	1482088	G	C	1482088	3	2	240	1	0	0	0	0	1	0	0	0	9645	942	33	2	1307	2	MICALL2	7	1482088	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	350020	1482088	157656575	1775	20625										
INTS1	0	genome.wustl.edu	37	chr7	1533499	1533499	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgatgaccaggatgcgcatCagcgtgtcctccaaaatggg	12	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	1533499	1533499	C	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.2343	p.L781	0.993	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	16	0	0	9	7	43.75	-	-	-	T	1533499	C	T	1533499	2	4	240	1	0	0	0	0	0	0	0	1	7829	813	29	2		2	INTS1	7	1533499	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51411	1533499	157605164	1776	20626										
INTS1	0	genome.wustl.edu	37	chr7	1536831	1536831	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgcatgagccccaggcaGaaggcctggaagttgatctc	12	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	1536831	1536831	G	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.1929	p.F643L	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	30	0	0	34	13	27.66	-	-	-	T	1536831	G	T	1536831	3	4	240	1	0	0	0	0	1	0	0	0	7829	933	33	2	5179	2	INTS1	7	1536831	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3332	1536831	157601832	1777	20627										
IQCE	0	genome.wustl.edu	37	chr7	2618127	2618127	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggcacggattttgttcgGactctggcagagaaaaggcc	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	2618127	2618127	G	C	SNP	IQCE	ENST00000402050	human	ensembl	69_37n	1	known	silent	c.597	p.R199	0.873	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCE	HGNC	ENSG00000106012	65	0	0	50	17	25.37	-	-	-	C	2618127	G	C	2618127	2	2	240	1	0	0	0	0	0	0	0	1	7860	1161	41	2		2	IQCE	7	2618127	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1081296	2618127	156520536	1778	20628										
GNA12	0	genome.wustl.edu	37	chr7	2770816	2770816	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccccggggcttcctcgctCactgcagcatgatgtccttc	9	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	2770816	2770816	C	T	SNP	GNA12	ENST00000275364	human	ensembl	69_37n	-1	known	silent	c.1145	p.*382	1.000	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA12	HGNC	ENSG00000146535	35	0	0	42	13	23.64	-	-	-	T	2770816	C	T	2770816	2	4	240	1	0	0	0	0	0	0	0	1	6552	837	29	2		2	GNA12	7	2770816	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	152689	2770816	156367847	1779	20629										
GNA12	0	genome.wustl.edu	37	chr7	2771103	2771103	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatgatggagacgttgaaGaagagcttgttgttgacgat	14	3	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	2771103	2771103	G	A	SNP	GNA12	ENST00000275364	human	ensembl	69_37n	-1	known	silent	c.858	p.F286	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA12	HGNC	ENSG00000146535	60	0	0	52	15	22.39	-	-	-	A	2771103	G	A	2771103	2	1	240	1	0	0	0	0	0	0	0	1	6552	933	33	2		2	GNA12	7	2771103	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	287	2771103	156367560	1780	20630										
SDK1	0	genome.wustl.edu	37	chr7	3861174	3861174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccgtgaatgagaaaaatgGagaaaacaagacaagcccat	11	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	3861174	3861174	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.806	p.G269E	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	57	0	0	44	14	24.14	-	-	-	A	3861174	G	A	3861174	3	1	240	1	0	0	0	0	1	0	0	0	14056	1174	41	2	824	2	SDK1	7	3861174	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1090071	3861174	155277489	1781	20631										
SDK1	0	genome.wustl.edu	37	chr7	4167016	4167016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcattggttctttgcagttcCttcagccgcccctgagaacg	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	4167016	4167016	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3827	p.P1276L	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	59	0	0	45	15	25	-	-	-	T	4167016	C	T	4167016	3	4	240	1	0	0	0	0	1	0	0	0	14056	681	24	4	3929	4	SDK1	7	4167016	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	305842	4167016	154971647	1782	20632										
TNRC18	0	genome.wustl.edu	37	chr7	5391556	5391556	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtggccggcttgggtttCagagtccggggggccgccag	19	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	5391556	5391556	C	G	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	silent	c.5364	p.L1788	0.997	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	29	0	0	22	10	31.25	-	-	-	G	5391556	C	G	5391556	2	3	240	1	0	0	0	0	0	0	0	1	16434	813	29	2		2	TNRC18	7	5391556	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1224540	5391556	153747107	1783	20633										
TNRC18	0	genome.wustl.edu	37	chr7	5399126	5399126	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcatcatgttcctcctcaGaccccttgtgtctctttctt	7	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	5399126	5399126	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.4736	p.S1579F	0.471	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	130	0	0	133	42	24	-	-	-	A	5399126	G	A	5399126	3	1	240	1	0	0	0	0	1	0	0	0	16434	942	33	2	4234	2	TNRC18	7	5399126	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7570	5399126	153739537	1784	20634										
ACTB	0	genome.wustl.edu	37	chr7	5568351	5568351	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaaggtctcaaacatgatCtgtaaggcagagatacacca	9	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	5568351	5568351	C	A	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	splice_site	c.364-1	e3-1	1.000	-	-	-	no_errors	ACTB	HGNC	ENSG00000075624	25	0	0	27	7	20.59	-	-	-	A	5568351	C	A	5568351	5	1	240	1	0	0	0	0	0	0	1	0	193	927	32	2	776	2	ACTB	7	5568351	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	169225	5568351	153570312	1785	20635										
PMS2	0	genome.wustl.edu	37	chr7	6013168	6013168	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttaagagcagtcccaatCatcacctgagtgtgagacac	10	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6013168	6013168	C	T	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.2451	p.M817I	1.000	pfam_MutL_C,smart_MutL_C	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	11	0	0	2	6	75	-	-	-	T	6013168	C	T	6013168	3	4	240	1	0	0	0	0	1	0	0	0	12217	826	29	2	141	2	PMS2	7	6013168	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	444817	6013168	153125495	1786	20636										
PMS2	0	genome.wustl.edu	37	chr7	6017294	6017294	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaccccagggctgtcgctCagcatgaagatcagttcatc	10	12	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6017294	6017294	C	T	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	silent	c.2370	p.L790	0.031	pfam_MutL_C,smart_MutL_C	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	64	0	0	62	14	18.42	-	-	-	T	6017294	C	T	6017294	2	4	240	1	0	0	0	0	0	0	0	1	12217	813	29	2		2	PMS2	7	6017294	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4126	6017294	153121369	1787	20637										
DAGLB	0	genome.wustl.edu	37	chr7	6474605	6474605	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattttccccccaagagggtCaaagacaatgataatggaaa	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6474605	6474605	C	T	SNP	DAGLB	ENST00000297056	human	ensembl	69_37n	-1	known	missense	c.466	p.D156N	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535	47	0	0	62	13	17.33	-	-	-	T	6474605	C	T	6474605	3	4	240	1	0	0	0	0	1	0	0	0	4259	826	29	2	1600	2	DAGLB	7	6474605	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	457311	6474605	152664058	1788	20638										
KDELR2	0	genome.wustl.edu	37	chr7	6502626	6502626	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccttctggctcttttcctCtgcgtttttacagagccact	6	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6502626	6502626	C	T	SNP	KDELR2	ENST00000490996	human	ensembl	69_37n	-1	known	missense	c.532	p.E178K	0.931	NULL	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR2	HGNC	ENSG00000136240	125	0	0	80	31	27.93	-	-	-	T	6502626	C	T	6502626	3	4	240	1	0	0	0	0	1	0	0	0	8174	922	32	2	32	2	KDELR2	7	6502626	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28021	6502626	152636037	1789	20639										
C7orf26	0	genome.wustl.edu	37	chr7	6639513	6639513	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgattgtcacctggatttttGaggacccaaggttgattctc	10	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6639513	6639513	G	A	SNP	C7orf26	ENST00000344417	human	ensembl	69_37n	1	known	missense	c.634	p.E212K	1.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576	123	0	0	79	19	19.39	-	-	-	A	6639513	G	A	6639513	3	1	240	1	0	0	0	0	1	0	0	0	2404	1291	45	2	648	2	C7orf26	7	6639513	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	136887	6639513	152499150	1790	20640										
C7orf26	0	genome.wustl.edu	37	chr7	6639567	6639567	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atactccgattgcggccaatCtgccaataggattcttagag	9	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	6639567	6639567	C	T	SNP	C7orf26	ENST00000344417	human	ensembl	69_37n	1	known	silent	c.688	p.L230	0.839	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576	99	0	0	65	17	20.73	-	-	-	T	6639567	C	T	6639567	2	4	240	1	0	0	0	0	0	0	0	1	2404	912	32	2		2	C7orf26	7	6639567	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54	6639567	152499096	1791	20641										
PHF14	0	genome.wustl.edu	37	chr7	11091322	11091322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaccagatggaaccaaacGatcaaggaggcagattaagg	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	11091322	11091322	G	A	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	missense	c.2396	p.R799Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	82	0	0	45	9	16.67	-	-	-	A	11091322	G	A	11091322	3	1	240	1	0	0	0	0	1	0	0	0	11899	1058	37	1	2450	1	PHF14	7	11091322	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4451755	11091322	148047341	1792	20642										
THSD7A	0	genome.wustl.edu	37	chr7	11450849	11450849	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaccgcttcacaatatttCaggtcaactgacttgccatc	5	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	11450849	11450849	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.3783	p.L1261	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	173	0	0	163	42	20.39	-	-	-	T	11450849	C	T	11450849	2	4	240	1	0	0	0	0	0	0	0	1	15974	813	29	2		2	THSD7A	7	11450849	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	359527	11450849	147687814	1793	20643										
ANKMY2	0	genome.wustl.edu	37	chr7	16650204	16650204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtgtccagtttattctctCcatcttttaagaagttaatg	7	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	16650204	16650204	C	T	SNP	ANKMY2	ENST00000306999	human	ensembl	69_37n	-1	known	missense	c.716	p.G239E	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY2	HGNC	ENSG00000106524	124	0	0	84	25	22.94	-	-	-	T	16650204	C	T	16650204	3	4	240	1	0	0	0	0	1	0	0	0	635	855	30	2	629	2	ANKMY2	7	16650204	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5199355	16650204	142488459	1794	20644										
HDAC9	0	genome.wustl.edu	37	chr7	18705919	18705919	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcttcagggggaccaggcGatgcaggaagacagagcgcc	17	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	18705919	18705919	G	C	SNP	HDAC9	ENST00000441542	human	ensembl	69_37n	1	known	silent	c.1551	p.A517	0.031	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	61	0	0	66	18	21.43	-	-	-	C	18705919	G	C	18705919	2	2	240	1	0	0	0	0	0	0	0	1	7065	1045	37	3		3	HDAC9	7	18705919	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2055715	18705919	140432744	1795	20645										
TWISTNB	0	genome.wustl.edu	37	chr7	19738341	19738341	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaaacttcagagcgcttGaattgtaaactataaattaa	6	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	19738341	19738341	G	C	SNP	TWISTNB	ENST00000222567	human	ensembl	69_37n	-1	known	missense	c.615	p.F205L	0.112	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849	35	0	0	26	10	27.78	-	-	-	C	19738341	G	C	19738341	3	2	240	1	0	0	0	0	1	0	0	0	16881	1281	45	2	405	2	TWISTNB	7	19738341	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1032422	19738341	139400322	1796	20646										
MACC1	0	genome.wustl.edu	37	chr7	20199081	20199081	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttctgtcatgacttggctGaaaggatcctttcttacttc	7	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	20199081	20199081	G	A	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	silent	c.903	p.F301	0.964	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	46	0	0	44	20	31.25	-	-	-	A	20199081	G	A	20199081	2	1	240	1	0	0	0	0	0	0	0	1	9210	1281	45	2		2	MACC1	7	20199081	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	460740	20199081	138939582	1797	20647										
ITGB8	0	genome.wustl.edu	37	chr7	20444323	20444323	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatcgatgccagtgcccttCagcagcagcccagcactgtg	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	20444323	20444323	C	T	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	1	known	missense	c.1760	p.S587L	0.065	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	75	0	0	61	24	28.24	-	-	-	T	20444323	C	T	20444323	3	4	240	1	0	0	0	0	1	0	0	0	7955	838	29	2	1802	2	ITGB8	7	20444323	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	245242	20444323	138694340	1798	20648										
SP4	0	genome.wustl.edu	37	chr7	21469372	21469372	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatttgcagggtcaaattCagctcatttctgcaggtaat	10	7	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	21469372	21469372	C	T	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	nonsense	c.589	p.Q197*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	36	0	0	40	8	16.67	-	-	-	T	21469372	C	T	21469372	4	4	240	1	0	0	0	0	0	1	0	0	15055	827	29	2	599	2	SP4	7	21469372	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1025049	21469372	137669291	1799	20649										
DNAH11	0	genome.wustl.edu	37	chr7	21657332	21657332	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagcctccctgagggccatCacagagttacagagccctgc	10	15	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	21657332	21657332	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.4206	p.I1402	0.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	49	0	0	30	8	21.05	-	-	-	A	21657332	C	A	21657332	2	1	240	1	0	0	0	0	0	0	0	1	4635	816	29	2		2	DNAH11	7	21657332	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	187960	21657332	137481331	1800	20650										
DNAH11	0	genome.wustl.edu	37	chr7	21840887	21840887	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagacttgtcaaggaacttGaggcaagttaaaccttttct	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	21840887	21840887	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.10180	p.E3394Q	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	69	0	0	38	8	17.39	-	-	-	C	21840887	G	C	21840887	3	2	240	1	0	0	0	0	1	0	0	0	4635	1291	45	2	10427	2	DNAH11	7	21840887	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	183555	21840887	137297776	1801	20651										
NFE2L3	0	genome.wustl.edu	37	chr7	26223397	26223397	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatcacagcctgaaaattCactggaggtaattggaactt	8	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	26223397	26223397	C	T	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.827	p.S276L	0.724	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	126	0	0	87	39	30.95	-	-	-	T	26223397	C	T	26223397	3	4	240	1	0	0	0	0	1	0	0	0	10441	838	29	2	837	2	NFE2L3	7	26223397	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4382510	26223397	132915266	1802	20652										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26232920	26232920	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaccaccaaagtttccactCttcattggaccgtagttaga	6	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	26232920	26232920	C	G	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.951	p.K317N	1.000	pfam_HnRNPA1	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	152	0	0	99	49	33.11	-	-	-	G	26232920	C	G	26232920	3	3	240	1	0	0	0	0	1	0	0	0	7310	912	32	2	118	2	HNRNPA2B1	7	26232920	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9523	26232920	132905743	1803	20653										
SKAP2	0	genome.wustl.edu	37	chr7	26765161	26765161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctctctcatcataatcctCaggaataatatcagattcca	3	12	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	26765161	26765161	C	T	SNP	SKAP2	ENST00000345317	human	ensembl	69_37n	-1	known	missense	c.682	p.E228K	1.000	NULL	pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_SH3_domain,prints_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain	-	no_errors	SKAP2	HGNC	ENSG00000005020	93	0	0	80	16	16.67	-	-	-	T	26765161	C	T	26765161	3	4	240	1	0	0	0	0	1	0	0	0	14445	835	29	2	413	2	SKAP2	7	26765161	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	532241	26765161	132373502	1804	20654										
PLEKHA8	0	genome.wustl.edu	37	chr7	30087519	30087519	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctactgtgacctccttgttCagcaagtagataaaacaaaa	6	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	30087519	30087519	C	T	SNP	PLEKHA8	ENST00000449726	human	ensembl	69_37n	1	known	nonsense	c.385	p.Q129*	1.000	NULL	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086	73	0	0	44	30	40.54	-	-	-	T	30087519	C	T	30087519	4	4	240	1	0	0	0	0	0	1	0	0	12136	827	29	2	399	2	PLEKHA8	7	30087519	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3322358	30087519	129051144	1805	20655										
INMT	0	genome.wustl.edu	37	chr7	30795236	30795236	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaaccttgcctcactgctCaagccgggtggccacctggt	11	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	30795236	30795236	C	G	SNP	INMT	ENST00000013222	human	ensembl	69_37n	1	known	silent	c.561	p.L187	0.985	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644	64	0	0	59	13	18.06	-	-	-	G	30795236	C	G	30795236	2	3	240	1	0	0	0	0	0	0	0	1	7799	813	29	2		2	INMT	7	30795236	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	707717	30795236	128343427	1806	20656										
AVL9	0	genome.wustl.edu	37	chr7	32598867	32598867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgactgggaaactttggatCctagtgtcttagaggacccc	12	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	32598867	32598867	C	T	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	missense	c.1006	p.P336S	1.000	pfam_Secretory_pathway_prot_Avl9	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	59	0	0	42	9	17.65	-	-	-	T	32598867	C	T	32598867	3	4	240	1	0	0	0	0	1	0	0	0	1232	855	30	2	1044	2	AVL9	7	32598867	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1803631	32598867	126539796	1807	20657										
NT5C3	0	genome.wustl.edu	37	chr7	33055431	33055431	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtattcctcaaggcaccatCatgtttgttaaatacatgaa	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	33055431	33055431	C	A	SNP	NT5C3	ENST00000242210	human	ensembl	69_37n	-1	known	missense	c.760	p.D254Y	1.000	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3	HGNC	ENSG00000122643	125	0	0	75	14	15.73	-	-	-	A	33055431	C	A	33055431	3	1	240	1	0	0	0	0	1	0	0	0	10761	826	29	2	258	2	NT5C3	7	33055431	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	456564	33055431	126083232	1808	20658										
RP9	0	genome.wustl.edu	37	chr7	33136887	33136887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggactttacttaccactCtgaactgctctaacttttgg	6	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	33136887	33136887	C	G	SNP	RP9	ENST00000297157	human	ensembl	69_37n	-1	known	missense	c.401	p.R134T	1.000	NULL	NULL	-	no_errors	RP9	HGNC	ENSG00000164610	139	1	0.71	77	27	25.96	-	-	-	G	33136887	C	G	33136887	3	3	240	1	0	0	0	0	1	0	0	0	13621	913	32	2	276	2	RP9	7	33136887	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	81456	33136887	126001776	1809	20659										
SEPT7	0	genome.wustl.edu	37	chr7	35930340	35930340	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatgagaactacagaagcaGaaaacttgcagctgtgactt	9	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	35930340	35930340	G	A	SNP	SEPT7	ENST00000399034	human	ensembl	69_37n	1	known	missense	c.938	p.R313K	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin7	-	no_errors	SEPT7	HGNC	ENSG00000122545	77	0	0	50	12	19.35	-	-	-	A	35930340	G	A	35930340	3	1	240	1	0	0	0	0	1	0	0	0	14157	942	33	2	971	2	SEPT7	7	35930340	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2793453	35930340	123208323	1810	20660										
EEPD1	0	genome.wustl.edu	37	chr7	36338800	36338800	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcgaagtgaagccaacatCaagcacgagcgatgatgaca	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	36338800	36338800	C	G	SNP	EEPD1	ENST00000242108	human	ensembl	69_37n	1	known	missense	c.1695	p.I565M	0.100	superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	40	0	0	32	8	20	-	-	-	G	36338800	C	G	36338800	3	3	240	1	0	0	0	0	1	0	0	0	4967	816	29	2	1721	2	EEPD1	7	36338800	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	408460	36338800	122799863	1811	20661										
ELMO1	0	genome.wustl.edu	37	chr7	37136305	37136305	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagggacattcatgcttgtCttctcgactactgttctcaa	7	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	37136305	37136305	C	G	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.1219	p.D407H	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	107	0	0	78	23	22.77	-	-	-	G	37136305	C	G	37136305	3	3	240	1	0	0	0	0	1	0	0	0	5102	913	32	2	996	2	ELMO1	7	37136305	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	797505	37136305	122002358	1812	20662										
CDK13	0	genome.wustl.edu	37	chr7	40027724	40027724	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaggaggaatcagtatctCttaaagagaaaaccaaacca	7	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	40027724	40027724	C	G	SNP	CDK13	ENST00000181839	human	ensembl	69_37n	1	known	missense	c.1738	p.L580V	0.026	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	64	0	0	34	4	10.53	-	-	-	G	40027724	C	G	40027724	3	3	240	1	0	0	0	0	1	0	0	0	3158	913	32	2	1744	2	CDK13	7	40027724	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2891419	40027724	119110939	1813	20663										
CDK13	0	genome.wustl.edu	37	chr7	40085603	40085603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatagagatattaaatgttCcaatatccttctaaataata	4	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	40085603	40085603	C	T	SNP	CDK13	ENST00000181839	human	ensembl	69_37n	1	known	missense	c.2522	p.S841F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	72	0	0	62	26	29.55	-	-	-	T	40085603	C	T	40085603	3	4	240	1	0	0	0	0	1	0	0	0	3158	855	30	2	2544	2	CDK13	7	40085603	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	57879	40085603	119053060	1814	20664										
STK17A	0	genome.wustl.edu	37	chr7	43635678	43635678	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaatttacatgaagtttatGagactgcatcagaaatgatc	7	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	43635678	43635678	G	C	SNP	STK17A	ENST00000319357	human	ensembl	69_37n	1	known	missense	c.385	p.E129Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17A	HGNC	ENSG00000164543	97	0	0	37	41	52.56	-	-	-	C	43635678	G	C	43635678	3	2	240	1	0	0	0	0	1	0	0	0	15381	1291	45	2	391	2	STK17A	7	43635678	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3550075	43635678	115502985	1815	20665										
STK17A	0	genome.wustl.edu	37	chr7	43664136	43664136	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagatcgagccactgctgaaGaatgtctaaagcacccctgg	11	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	43664136	43664136	G	C	SNP	STK17A	ENST00000319357	human	ensembl	69_37n	1	known	missense	c.940	p.E314Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17A	HGNC	ENSG00000164543	34	0	0	17	9	34.62	-	-	-	C	43664136	G	C	43664136	3	2	240	1	0	0	0	0	1	0	0	0	15381	943	33	2	966	2	STK17A	7	43664136	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	28458	43664136	115474527	1816	20666										
URGCP	0	genome.wustl.edu	37	chr7	43917189	43917189	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaagacagctctcagcctCataaaactgtcccatctccc	4	17	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	43917189	43917189	C	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.1873	p.E625K	1.000	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	25	0	0	19	4	17.39	-	-	-	T	43917189	C	T	43917189	3	4	240	1	0	0	0	0	1	0	0	0	17123	835	29	2	926	2	URGCP	7	43917189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	253053	43917189	115221474	1817	20667										
DBNL	0	genome.wustl.edu	37	chr7	44099153	44099153	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtgcagatctccctgctGaggagccggcgcccagcact	13	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44099153	44099153	G	A	SNP	DBNL	ENST00000468694	human	ensembl	69_37n	1	known	missense	c.970	p.E324K	0.093	superfamily_SH3_domain	pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DBNL	HGNC	ENSG00000136279	42	0	0	35	6	14.63	-	-	-	A	44099153	G	A	44099153	3	1	240	1	0	0	0	0	1	0	0	0	4287	1291	45	2	1012	2	DBNL	7	44099153	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	181964	44099153	115039510	1818	20668										
POLM	0	genome.wustl.edu	37	chr7	44112992	44112992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcttctgcaacagaagcagGacttccgtgacctaggagtc	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44112992	44112992	G	A	SNP	POLM	ENST00000395831	human	ensembl	69_37n	-1	novel	missense	c.1196	p.S399F	0.000	NULL	superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X	-	no_errors	POLM	HGNC	ENSG00000122678	36	0	0	39	15	27.78	-	-	-	A	44112992	G	A	44112992	3	1	240	1	0	0	0	0	1	0	0	0	12280	1189	41	2		2	POLM	7	44112992	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13839	44112992	115025671	1819	20669										
POLM	0	genome.wustl.edu	37	chr7	44119319	44119319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttcaaagcctgctgcctCggccagtatctccagagcct	9	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44119319	44119319	C	T	SNP	POLM	ENST00000242248	human	ensembl	69_37n	-1	known	missense	c.493	p.E165K	1.000	superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,prints_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678	23	0	0	28	10	26.32	-	-	-	T	44119319	C	T	44119319	3	4	240	1	0	0	0	0	1	0	0	0	12280	893	31	1	1023	1	POLM	7	44119319	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6327	44119319	115019344	1820	20670										
AEBP1	0	genome.wustl.edu	37	chr7	44150827	44150827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccggcaccacagctacaagGacatgcgccaggttgggagc	13	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44150827	44150827	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.1705	p.D569N	1.000	smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	49	0	0	47	11	18.97	-	-	-	A	44150827	G	A	44150827	3	1	240	1	0	0	0	0	1	0	0	0	349	1174	41	2	1759	2	AEBP1	7	44150827	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31508	44150827	114987836	1821	20671										
AEBP1	0	genome.wustl.edu	37	chr7	44151894	44151894	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaataacttgcccatccctGaacgctacctttcgccagat	5	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44151894	44151894	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.2191	p.E731K	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	44	0	0	32	6	15.79	-	-	-	A	44151894	G	A	44151894	3	1	240	1	0	0	0	0	1	0	0	0	349	1291	45	2	2257	2	AEBP1	7	44151894	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1067	44151894	114986769	1822	20672										
MYL7	0	genome.wustl.edu	37	chr7	44180338	44180338	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagtaggtctccctcaggtCtgccttgcagatgatgccat	12	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44180338	44180338	C	T	SNP	MYL7	ENST00000223364	human	ensembl	69_37n	-1	known	missense	c.166	p.D56N	0.999	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL7	HGNC	ENSG00000106631	16	0	0	18	21	53.85	-	-	-	T	44180338	C	T	44180338	3	4	240	1	0	0	0	0	1	0	0	0	10125	913	32	2	381	2	MYL7	7	44180338	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28444	44180338	114958325	1823	20673										
CAMK2B	0	genome.wustl.edu	37	chr7	44286722	44286722	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggggtggggactcaccttGaggtctctgtggacgacccc	16	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44286722	44286722	G	C	SNP	CAMK2B	ENST00000523845	human	ensembl	69_37n	-1	known	nonsense	c.290	p.S97*	1.000	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404	62	0	0	43	9	17.31	-	-	-	C	44286722	G	C	44286722	4	2	240	1	0	0	0	0	0	1	0	0	2625	1277	45	2	1664	2	CAMK2B	7	44286722	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106384	44286722	114851941	1824	20674										
OGDH	0	genome.wustl.edu	37	chr7	44736517	44736517	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgtgtctctgcagggctGagccggatcttgaagactcg	14	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	44736517	44736517	G	C	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	silent	c.1905	p.L635	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	76	0	0	43	10	18.87	-	-	-	C	44736517	G	C	44736517	2	2	240	1	0	0	0	0	0	0	0	1	10912	1277	45	2		2	OGDH	7	44736517	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	449795	44736517	114402146	1825	20675										
ADCY1	0	genome.wustl.edu	37	chr7	45701769	45701769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccggaaaatgttcaaggccGagatccccttctccaatgtc	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	45701769	45701769	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	missense	c.1561	p.E521K	0.997	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	62	0	0	56	17	23.29	-	-	-	A	45701769	G	A	45701769	3	1	240	1	0	0	0	0	1	0	0	0	292	1059	37	1	1591	1	ADCY1	7	45701769	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	965252	45701769	113436894	1826	20676										
TNS3	0	genome.wustl.edu	37	chr7	47344432	47344432	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagatccatcttcttacctCtctctcctctgcccagggcc	5	17	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	47344432	47344432	C	T	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.2820	p.E940	0.768	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	64	0	0	76	12	13.64	-	-	-	T	47344432	C	T	47344432	2	4	240	1	0	0	0	0	0	0	0	1	16439	912	32	2		2	TNS3	7	47344432	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1642663	47344432	111794231	1827	20677										
PKD1L1	0	genome.wustl.edu	37	chr7	47870889	47870889	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcccacactgcagagctCcaccaaggctgaagggccct	11	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	47870889	47870889	C	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.6399	p.W2133C	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	35	0	0	39	18	31.58	-	-	-	A	47870889	C	A	47870889	3	1	240	1	0	0	0	0	1	0	0	0	12038	856	30	2	2214	2	PKD1L1	7	47870889	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	526457	47870889	111267774	1828	20678										
ABCA13	0	genome.wustl.edu	37	chr7	48269511	48269511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtactgaatgtgaccatttCgacactgacatttctgcagc	8	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	48269511	48269511	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.722	p.S241L	0.905	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	92	0	0	46	17	26.98	-	-	-	T	48269511	C	T	48269511	3	4	240	1	0	0	0	0	1	0	0	0	31	893	31	1	577	1	ABCA13	7	48269511	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	398622	48269511	110869152	1829	20679										
ABCA13	0	genome.wustl.edu	37	chr7	48312929	48312929	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaactcaagccaatgacttCcataattgggaggacttcct	8	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	48312929	48312929	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.3666	p.F1222L	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	60	0	0	43	20	31.75	-	-	-	A	48312929	C	A	48312929	3	1	240	1	0	0	0	0	1	0	0	0	31	854	30	2	3561	2	ABCA13	7	48312929	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43418	48312929	110825734	1830	20680										
ABCA13	0	genome.wustl.edu	37	chr7	48319347	48319347	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagccactttttgagattttCattaaagcaaccaccggaaa	6	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	48319347	48319347	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.8556	p.F2852	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	56	0	0	37	8	17.78	-	-	-	T	48319347	C	T	48319347	2	4	240	1	0	0	0	0	0	0	0	1	31	825	29	2		2	ABCA13	7	48319347	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6418	48319347	110819316	1831	20681										
ABCA13	0	genome.wustl.edu	37	chr7	48321036	48321036	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatggtcgtacgtgtgctCaccatcgttgcaggtgggct	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	48321036	48321036	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.8823	p.L2941	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	110	0	0	89	35	28.23	-	-	-	T	48321036	C	T	48321036	2	4	240	1	0	0	0	0	0	0	0	1	31	813	29	2		2	ABCA13	7	48321036	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1689	48321036	110817627	1832	20682										
FIGNL1	0	genome.wustl.edu	37	chr7	50513475	50513475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccccgttgagataacaagGaatcaatttcgtcaataaat	6	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	50513475	50513475	G	A	SNP	FIGNL1	ENST00000356889	human	ensembl	69_37n	-1	known	missense	c.1511	p.S504F	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436	44	0	0	48	13	21.31	-	-	-	A	50513475	G	A	50513475	3	1	240	1	0	0	0	0	1	0	0	0	5938	1174	41	2	517	2	FIGNL1	7	50513475	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2192439	50513475	108625188	1833	20683										
EGFR	0	genome.wustl.edu	37	chr7	55269464	55269464	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attccaccgtggcttgcattGatagaaatggggtatgtatg	12	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	55269464	55269464	G	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	missense	c.3151	p.D1051N	0.010	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	106	0	0	68	21	23.6	-	-	-	A	55269464	G	A	55269464	3	1	240	1	0	0	0	0	1	0	0	0	5002	1290	45	2	3517	2	EGFR	7	55269464	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4755989	55269464	103869199	1834	20684										
ZNF713	0	genome.wustl.edu	37	chr7	56006852	56006852	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaccaagaaaaccacaagaGatatttaggacaagtaactt	6	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	56006852	56006852	G	C	SNP	ZNF713	ENST00000429591	human	ensembl	69_37n	1	known	missense	c.446	p.R149T	0.477	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF713	HGNC	ENSG00000178665	57	0	0	66	12	15.38	-	-	-	C	56006852	G	C	56006852	3	2	240	1	0	0	0	0	1	0	0	0	18213	942	33	2	460	2	ZNF713	7	56006852	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	737388	56006852	103131811	1835	20685										
SUMF2	0	genome.wustl.edu	37	chr7	56147382	56147382	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgttgcaaacagcgcaattCcaagctcgagagcttcagcc	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	56147382	56147382	C	G	SNP	SUMF2	ENST00000342190	human	ensembl	69_37n	1	known	missense	c.895	p.P299A	0.002	NULL	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF2	HGNC	ENSG00000129103	49	0	0	70	9	11.39	-	-	-	G	56147382	C	G	56147382	3	3	240	1	0	0	0	0	1	0	0	0	15477	855	30	2	1074	2	SUMF2	7	56147382	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140530	56147382	102991281	1836	20686										
CHCHD2	0	genome.wustl.edu	37	chr7	56171948	56171948	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgtcaggcctcgcaggctCagcattacttcctccactga	9	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	56171948	56171948	C	T	SNP	CHCHD2	ENST00000395422	human	ensembl	69_37n	-1	known	missense	c.271	p.E91K	1.000	NULL	pfam_CHCH	-	no_errors	CHCHD2	HGNC	ENSG00000106153	27	0	0	27	25	48.08	-	-	-	T	56171948	C	T	56171948	3	4	240	1	0	0	0	0	1	0	0	0	3345	835	29	2	196	2	CHCHD2	7	56171948	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24566	56171948	102966715	1837	20687										
GUSB	0	genome.wustl.edu	37	chr7	65444483	65444483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctgcagtccagcgtagttGaaaaagtcaaaatatgtgtt	10	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	65444483	65444483	G	C	SNP	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	missense	c.627	p.F209L	1.000	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	93	0	0	54	56	50.91	-	-	-	C	65444483	G	C	65444483	3	2	240	1	0	0	0	0	1	0	0	0	6953	1281	45	2	1364	2	GUSB	7	65444483	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9272535	65444483	93694180	1838	20688										
KCTD7	0	genome.wustl.edu	37	chr7	66274155	66274155	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaagttcaagacatcgttGagaaatacccactggaaatt	9	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	66274155	66274155	G	A	SNP	KCTD7	ENST00000380828	human	ensembl	69_37n	1	known	missense	c.1480	p.E494K	1.000	NULL	pfam_VPS9,pfam_Znf_A20,smart_Znf_A20,smart_VPS9_subgr,pfscan_VPS9,pfscan_Znf_A20	-	no_errors	KCTD7	HGNC	ENSG00000243335	44	0	0	48	7	12.73	-	-	-	A	66274155	G	A	66274155	3	1	240	1	0	0	0	0	1	0	0	0	8168	1291	45	2		2	KCTD7	7	66274155	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	829672	66274155	92864508	1839	20689										
SBDS	0	genome.wustl.edu	37	chr7	66460354	66460354	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggcacgcttcatccgtacCacggccacattggttaggcg	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	66460354	66460354	C	G	SNP	SBDS	ENST00000246868	human	ensembl	69_37n	-1	known	silent	c.51	p.V17	0.999	pfam_Ribosome_mat_SBDS_N,superfamily_Ribosome_mat_SBDS_N,tigrfam_Ribosome_maturation_pr_SBDS	pfam_Ribosome_mat_SBDS_C,pfam_Ribosome_mat_SBDS_N,superfamily_Ribosome_mat_SBDS_N,tigrfam_Ribosome_maturation_pr_SBDS	-	no_errors	SBDS	HGNC	ENSG00000126524	49	0	0	32	11	25.58	-	-	-	G	66460354	C	G	66460354	2	3	240	1	0	0	0	0	0	0	0	1	13944	581	21	4		4	SBDS	7	66460354	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	186199	66460354	92678309	1840	20690										
STAG3L4	0	genome.wustl.edu	37	chr7	66774032	66774032	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggtgccagtacatcctcctCcatgatgacttccctatgga	8	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	66774032	66774032	C	G	SNP	STAG3L4	ENST00000416602	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STAG3L4	HGNC	ENSG00000106610	153	0	0	139	41	22.78	-	-	-	G	66774032	C	G	66774032	1	3	240	0	1	0	0	0	0	0	0	0	15338	842	30	2		2	STAG3L4	7	66774032	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	313678	66774032	92364631	1841	20691										
AUTS2	0	genome.wustl.edu	37	chr7	70229952	70229952	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccactgacatcaggaagtCtgcaggtggccggacacccg	12	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	70229952	70229952	C	G	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	missense	c.1429	p.L477V	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	50	0	0	91	19	17.27	-	-	-	G	70229952	C	G	70229952	3	3	240	1	0	0	0	0	1	0	0	0	1229	912	32	2	1604	2	AUTS2	7	70229952	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3455920	70229952	88908711	1842	20692										
TYW1B	0	genome.wustl.edu	37	chr7	72159806	72159806	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagctgagtaactggctcGaggttccttagtaatttttt	9	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	72159806	72159806	G	A	SNP	TYW1B	ENST00000438125	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	TYW1B	HGNC	ENSG00000254184	129	0	0	63	46	41.82	-	-	-	A	72159806	G	A	72159806	1	1	240	0	1	0	0	0	0	0	0	0	16916	1045	37	1		1	TYW1B	7	72159806	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1929854	72159806	86978857	1843	20693										
NSUN5	0	genome.wustl.edu	37	chr7	72718967	72718967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgcctaccctgtcctgcaGaatgaggtgtccggcccggt	12	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	72718967	72718967	G	A	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.628	p.L210	0.991	pfam_Fmu/NOL1/Nop2p,prints_RCMT	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	101	0	0	130	37	22.16	-	-	-	A	72718967	G	A	72718967	2	1	240	1	0	0	0	0	0	0	0	1	10754	933	33	2		2	NSUN5	7	72718967	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	559161	72718967	86419696	1844	20694										
MLXIPL	0	genome.wustl.edu	37	chr7	73021642	73021642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaaagctctggggcctccCtggccctcccccactgaccc	10	19	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	73021642	73021642	C	T	SNP	MLXIPL	ENST00000456640	human	ensembl	69_37n	-1	putative	missense	c.283	p.G95R	0.001	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	MLXIPL	HGNC	ENSG00000009950	20	0	0	28	8	22.22	-	-	-	T	73021642	C	T	73021642	3	4	240	1	0	0	0	0	1	0	0	0	9708	696	24	4		4	MLXIPL	7	73021642	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	302675	73021642	86117021	1845	20695										
WBSCR22	0	genome.wustl.edu	37	chr7	73101226	73101226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggatatcagccctgccatGctgggtaagtatgtcctgtc	11	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	73101226	73101226	G	C	SNP	WBSCR22	ENST00000265758	human	ensembl	69_37n	1	known	missense	c.261	p.M87I	1.000	pfam_Methyltransf_11	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462	122	0	0	122	33	21.29	-	-	-	C	73101226	G	C	73101226	3	2	240	1	0	0	0	0	1	0	0	0	17362	1319	46	4	275	4	WBSCR22	7	73101226	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	79584	73101226	86037437	1846	20696										
STX1A	0	genome.wustl.edu	37	chr7	73123384	73123384	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggctcccacctgctcaaaGaactcatccatgaagcggtc	8	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	73123384	73123384	G	C	SNP	STX1A	ENST00000222812	human	ensembl	69_37n	-1	known	missense	c.99	p.F33L	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1A	HGNC	ENSG00000106089	41	0	0	45	8	15.09	-	-	-	C	73123384	G	C	73123384	3	2	240	1	0	0	0	0	1	0	0	0	15434	933	33	2	803	2	STX1A	7	73123384	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22158	73123384	86015279	1847	20697										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74564025	74564025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccatgacgggtacaaaatCtggcaacgagatctttttgc	10	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	74564025	74564025	C	G	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	missense	c.1772	p.S591C	0.990	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	89	0	0	71	36	33.64	-	-	-	G	74564025	C	G	74564025	3	3	240	1	0	0	0	0	1	0	0	0	6921	913	32	2	1830	2	GTF2IRD2B	7	74564025	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1440641	74564025	84574638	1848	20698										
HIP1	0	genome.wustl.edu	37	chr7	75167540	75167540	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgtaggtggagatgcctCtgttcctaaaagacaatgat	11	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	75167540	75167540	C	G	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.3067	p.E1023Q	0.984	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	268	0	0	267	61	18.6	-	-	-	G	75167540	C	G	75167540	3	3	240	1	0	0	0	0	1	0	0	0	7165	922	32	2	50	2	HIP1	7	75167540	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	603515	75167540	83971123	1849	20699										
STYXL1	0	genome.wustl.edu	37	chr7	75643111	75643111	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaagtggtacgtgcctgaGaagcgctcatagcccccttt	11	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	75643111	75643111	G	A	SNP	STYXL1	ENST00000248600	human	ensembl	69_37n	-1	known	silent	c.402	p.F134	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYXL1	HGNC	ENSG00000127952	61	0	0	45	24	34.78	-	-	-	A	75643111	G	A	75643111	2	1	240	1	0	0	0	0	0	0	0	1	15452	933	33	2		2	STYXL1	7	75643111	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	475571	75643111	83495552	1850	20700										
ZP3	0	genome.wustl.edu	37	chr7	76054333	76054333	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgctctggggtagtactGagctgtgctacccccaaccc	10	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	76054333	76054333	G	A	SNP	ZP3	ENST00000394857	human	ensembl	69_37n	1	known	missense	c.52	p.E18K	0.125	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP3	HGNC	ENSG00000188372	11	0	0	11	6	35.29	-	-	-	A	76054333	G	A	76054333	3	1	240	1	0	0	0	0	1	0	0	0	18310	1291	45	2	54	2	ZP3	7	76054333	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	411222	76054333	83084330	1851	20701										
FGL2	0	genome.wustl.edu	37	chr7	76825881	76825881	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgtggttgtaatgtttgttGaaacgtaatgcatctccagc	10	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	76825881	76825881	G	A	SNP	FGL2	ENST00000248598	human	ensembl	69_37n	-1	known	silent	c.1035	p.F345	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGL2	HGNC	ENSG00000127951	95	0	0	80	38	32.2	-	-	-	A	76825881	G	A	76825881	2	1	240	1	0	0	0	0	0	0	0	1	5919	1281	45	2		2	FGL2	7	76825881	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	771548	76825881	82312782	1852	20702										
PHTF2	0	genome.wustl.edu	37	chr7	77558579	77558579	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcttgtaccagtgagacaGatgtggaaaatcatcagatt	9	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	77558579	77558579	G	C	SNP	PHTF2	ENST00000248550	human	ensembl	69_37n	1	known	missense	c.1273	p.D425H	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576	121	0	0	86	34	28.33	-	-	-	C	77558579	G	C	77558579	3	2	240	1	0	0	0	0	1	0	0	0	11937	942	33	2	1263	2	PHTF2	7	77558579	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	732698	77558579	81580084	1853	20703										
MAGI2	0	genome.wustl.edu	37	chr7	77708290	77708290	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggacctgtcccgtgcctCtcttgagcagcagcctcact	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	77708290	77708290	C	G	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.3680	p.R1227T	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	164	0	0	139	39	21.91	-	-	-	G	77708290	C	G	77708290	3	3	240	1	0	0	0	0	1	0	0	0	9262	913	32	2	695	2	MAGI2	7	77708290	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	149711	77708290	81430373	1854	20704										
CD36	0	genome.wustl.edu	37	chr7	80300480	80300480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatcagcaaatgcaaagaaGgtgagtaaataacctcagta	8	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	80300480	80300480	G	A	SNP	CD36	ENST00000309881	human	ensembl	69_37n	1	known	missense	c.1006	p.G336R	0.997	pfam_CD36,prints_CD36	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	67	0	0	34	27	44.26	-	-	-	A	80300480	G	A	80300480	3	1	240	1	0	0	0	0	1	0	0	0	3036	1014	35	4	1036	4	CD36	7	80300480	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2592190	80300480	78838183	1855	20705										
SEMA3C	0	genome.wustl.edu	37	chr7	80439931	80439931	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcgttgtctacttactgatCataacagacaccgtgttcac	6	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	80439931	80439931	C	T	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	missense	c.588	p.M196I	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	149	0	0	67	62	48.06	-	-	-	T	80439931	C	T	80439931	3	4	240	1	0	0	0	0	1	0	0	0	14114	826	29	2	1773	2	SEMA3C	7	80439931	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	139451	80439931	78698732	1856	20706										
PCLO	0	genome.wustl.edu	37	chr7	82390020	82390020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attaaacgaaggctctcgatCatgtctgcatactcttgttt	7	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	82390020	82390020	C	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.15223	p.D5075H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	156	0	0	114	32	21.92	-	-	-	G	82390020	C	G	82390020	3	3	240	1	0	0	0	0	1	0	0	0	11656	826	29	2	213	2	PCLO	7	82390020	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1950089	82390020	76748643	1857	20707										
PCLO	0	genome.wustl.edu	37	chr7	82580240	82580240	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcttaattttctccagttCcaggagctcacgctccaagt	7	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	82580240	82580240	C	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.9664	p.E3222Q	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	48	0	0	35	8	18.6	-	-	-	G	82580240	C	G	82580240	3	3	240	1	0	0	0	0	1	0	0	0	11656	864	30	2	5861	2	PCLO	7	82580240	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	190220	82580240	76558423	1858	20708										
PCLO	0	genome.wustl.edu	37	chr7	82586002	82586002	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagcaagtgtacttgcttGagcttccaaaatagatagga	9	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	82586002	82586002	G	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.4267	p.Q1423E	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	182	1	0.55	140	39	21.79	-	-	-	C	82586002	G	C	82586002	3	2	240	1	0	0	0	0	1	0	0	0	11656	1299	45	2	11262	2	PCLO	7	82586002	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5762	82586002	76552661	1859	20709										
PCLO	0	genome.wustl.edu	37	chr7	82784483	82784483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgctgagccaggctgttGaggtgggggctttgctgggc	18	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	82784483	82784483	G	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.1474	p.Q492E	0.196	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	67	0	0	85	16	15.84	-	-	-	C	82784483	G	C	82784483	3	2	240	1	0	0	0	0	1	0	0	0	11656	1299	45	2	14067	2	PCLO	7	82784483	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	198481	82784483	76354180	1860	20710										
ABCB1	0	genome.wustl.edu	37	chr7	87179302	87179302	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaatacaggttcctgactCaccacaccaatgatttcccg	5	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	87179302	87179302	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.1419	p.V473	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	125	0	0	110	22	16.67	-	-	-	T	87179302	C	T	87179302	2	4	240	1	0	0	0	0	0	0	0	1	40	813	29	2		2	ABCB1	7	87179302	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4394819	87179302	71959361	1861	20711										
ZNF804B	0	genome.wustl.edu	37	chr7	88964626	88964626	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagagcagccaaatgcagtCtgaaccacagaaagagagga	11	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	88964626	88964626	C	A	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.2330	p.S777Y	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	26	0	0	35	14	28.57	-	-	-	A	88964626	C	A	88964626	3	1	240	1	0	0	0	0	1	0	0	0	18264	913	32	2	2344	2	ZNF804B	7	88964626	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1785324	88964626	70174037	1862	20712										
STEAP1	0	genome.wustl.edu	37	chr7	89793985	89793985	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaggaagaagatactgaaGattagacatggttgggaaga	14	2	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	89793985	89793985	G	C	SNP	STEAP1	ENST00000297205	human	ensembl	69_37n	1	known	missense	c.957	p.K319N	1.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647	54	0	0	51	12	19.05	-	-	-	C	89793985	G	C	89793985	3	2	240	1	0	0	0	0	1	0	0	0	15368	933	33	2	971	2	STEAP1	7	89793985	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	829359	89793985	69344678	1863	20713										
STEAP2	0	genome.wustl.edu	37	chr7	89856709	89856709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtgtagaaaacagcttgGattactaagttttttcttcg	8	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	89856709	89856709	G	A	SNP	STEAP2	ENST00000287908	human	ensembl	69_37n	1	known	missense	c.917	p.G306E	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP2	HGNC	ENSG00000157214	91	0	0	59	30	33.71	-	-	-	A	89856709	G	A	89856709	3	1	240	1	0	0	0	0	1	0	0	0	15369	1174	41	2	923	2	STEAP2	7	89856709	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62724	89856709	69281954	1864	20714										
C7orf63	0	genome.wustl.edu	37	chr7	89897668	89897668	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtattgttgatttttatCatgcagaaccaccaaagaag	8	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	89897668	89897668	C	G	SNP	C7orf63	ENST00000389297	human	ensembl	69_37n	1	known	missense	c.502	p.H168D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792	153	0	0	119	21	15	-	-	-	G	89897668	C	G	89897668	3	3	240	1	0	0	0	0	1	0	0	0	2432	826	29	2	524	2	C7orf63	7	89897668	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40959	89897668	69240995	1865	20715										
AKAP9	0	genome.wustl.edu	37	chr7	91691662	91691662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaaactgatataatagatCgtcttgagcaggagttgtta	9	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	91691662	91691662	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.5875	p.R1959C	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	87	0	0	69	23	25	-	-	-	T	91691662	C	T	91691662	3	4	240	1	0	0	0	0	1	0	0	0	459	884	31	1	5933	1	AKAP9	7	91691662	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1793994	91691662	67447001	1866	20716										
AKAP9	0	genome.wustl.edu	37	chr7	91737878	91737878	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttcagaattacgatcctGacagagccctaacagattat	7	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	91737878	91737878	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.11629	p.D3877N	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	58	0	0	58	20	25.64	-	-	-	A	91737878	G	A	91737878	3	1	240	1	0	0	0	0	1	0	0	0	459	1290	45	2	11811	2	AKAP9	7	91737878	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46216	91737878	67400785	1867	20717										
ANKIB1	0	genome.wustl.edu	37	chr7	91991574	91991574	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaaaaaataaccgaaatGaaaccagaagaacgtaagag	8	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	91991574	91991574	G	A	SNP	ANKIB1	ENST00000265742	human	ensembl	69_37n	1	known	missense	c.1473	p.M491I	1.000	NULL	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629	107	0	0	78	16	17.02	-	-	-	A	91991574	G	A	91991574	3	1	240	1	0	0	0	0	1	0	0	0	630	1290	45	2	1507	2	ANKIB1	7	91991574	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	253696	91991574	67147089	1868	20718										
SAMD9	0	genome.wustl.edu	37	chr7	92735193	92735193	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatggctgttttccgcaatTctttgaatagttcttctatt	6	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	92735193	92735193	T	A	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.218	p.E73V	0.434	superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	190	0	0	129	35	21.34	-	-	-	A	92735193	T	A	92735193	3	1	240	1	0	0	0	0	1	0	0	0	13912	1783	62	5	4555	5	SAMD9	7	92735193	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	743619	92735193	66403470	1869	20719										
SAMD9L	0	genome.wustl.edu	37	chr7	92762413	92762413	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcttgtcttctaagctttCaggttcccagggtgtactag	9	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	92762413	92762413	C	G	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.2872	p.E958Q	0.397	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	68	0	0	55	15	21.43	-	-	-	G	92762413	C	G	92762413	3	3	240	1	0	0	0	0	1	0	0	0	13913	835	29	2	1886	2	SAMD9L	7	92762413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27220	92762413	66376250	1870	20720										
SAMD9L	0	genome.wustl.edu	37	chr7	92763635	92763635	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgggctttccactgaagaGagtaatagaaacactaccaa	8	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	92763635	92763635	G	C	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	silent	c.1650	p.L550	0.055	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	26	0	0	18	15	45.45	-	-	-	C	92763635	G	C	92763635	2	2	240	1	0	0	0	0	0	0	0	1	13913	929	33	2		2	SAMD9L	7	92763635	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1222	92763635	66375028	1871	20721										
COL1A2	0	genome.wustl.edu	37	chr7	94047825	94047825	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcagggtgaacctggtctCagaggtgaaattggtaaccc	12	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	94047825	94047825	C	G	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	silent	c.1986	p.L662	0.999	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	200	0	0	163	47	22.38	-	-	-	G	94047825	C	G	94047825	2	3	240	1	0	0	0	0	0	0	0	1	3708	813	29	2		2	COL1A2	7	94047825	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1284190	94047825	65090838	1872	20722										
SGCE	0	genome.wustl.edu	37	chr7	94257670	94257670	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgggatcattactaatctcGcctagataagaaacagagaa	8	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	94257670	94257670	G	A	SNP	SGCE	ENST00000445866	human	ensembl	69_37n	-1	known	silent	c.234	p.G78	0.872	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990	66	0	0	57	11	16.18	-	-	-	A	94257670	G	A	94257670	2	1	240	1	0	0	0	0	0	0	0	1	14290	1101	38	1		1	SGCE	7	94257670	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	209845	94257670	64880993	1873	20723										
PPP1R9A	0	genome.wustl.edu	37	chr7	94917887	94917887	+	Nonsense_Mutation	SNP	C	C	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccaaacacagtcagtgtCagaatcgggccgttcaggaa							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	94917887	94917887	C	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	nonsense	c.3535	p.Q1179*	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	88	0	0	58	29	33.33	-	-	-	T	94917887	C	T	94917887	4	4	240	1	0	0	0	0	0	1	0	0	12455	827	29	2	3867	2	PPP1R9A	7	94917887	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	660217	94917887	64220776	1874	20724	207	2								
PPP1R9A	0	genome.wustl.edu	37	chr7	94917889	94917889	+	Silent	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaaacacagtcagtgtcaGaatcgggccgttcaggaatg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	94917889	94917889	G	A	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	silent	c.3537	p.Q1179	0.998	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	85	0	0	47	40	45.98	-	-	-	A	94917889	G	A	94917889	2	1	240	1	0	0	0	0	0	0	0	1	12455	933	33	2		2	PPP1R9A	7	94917889	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2	94917889	64220774	1875	20725	207	2								
ASNS	0	genome.wustl.edu	37	chr7	97482374	97482374	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttttaaagacattatacctGatgttcaacgtattcctgta	5	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	97482374	97482374	G	T	SNP	ASNS	ENST00000175506	human	ensembl	69_37n	-1	known	missense	c.1474	p.Q492K	0.999	NULL	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669	39	0	0	47	9	16.07	-	-	-	T	97482374	G	T	97482374	3	4	240	1	0	0	0	0	1	0	0	0	1052	1299	45	2	219	2	ASNS	7	97482374	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2564485	97482374	61656289	1876	20726										
LMTK2	0	genome.wustl.edu	37	chr7	97821193	97821193	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accgaaaccagccagggcctGagcttcgagtatgtctggga	13	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	97821193	97821193	G	C	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	silent	c.1416	p.L472	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	29	0	0	35	9	20.45	-	-	-	C	97821193	G	C	97821193	2	2	240	1	0	0	0	0	0	0	0	1	8915	1277	45	2		2	LMTK2	7	97821193	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338819	97821193	61317470	1877	20727										
LMTK2	0	genome.wustl.edu	37	chr7	97822247	97822247	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacctccttcgaaacagaaGaaacgccccgtcgggtaccc	8	16	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	97822247	97822247	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.2470	p.E824K	0.021	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	51	0	0	30	24	44.44	-	-	-	A	97822247	G	A	97822247	3	1	240	1	0	0	0	0	1	0	0	0	8915	943	33	2	2512	2	LMTK2	7	97822247	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1054	97822247	61316416	1878	20728										
TRRAP	0	genome.wustl.edu	37	chr7	98565302	98565302	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccatggggaaccacttctGgatcaagcagtgcattgagg	13	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	98565302	98565302	G	T	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	nonsense	c.6637	p.G2213*	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	17	0	0	25	10	28.57	-	-	-	T	98565302	G	T	98565302	4	4	240	1	0	0	0	0	0	1	0	0	16697	1357	47	4	7608	4	TRRAP	7	98565302	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	743055	98565302	60573361	1879	20729										
BUD31	0	genome.wustl.edu	37	chr7	99013881	99013881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagcggaaagccatcagcaGaggtaattagtcagtctctc	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99013881	99013881	G	C	SNP	BUD31	ENST00000222969	human	ensembl	69_37n	1	known	missense	c.215	p.R72T	1.000	pfam_G10,prints_G10	pfam_G10,prints_G10	-	no_errors	BUD31	HGNC	ENSG00000106245	92	0	0	78	15	16.13	-	-	-	C	99013881	G	C	99013881	3	2	240	1	0	0	0	0	1	0	0	0	1583	942	33	2	221	2	BUD31	7	99013881	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	448579	99013881	60124782	1880	20730										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99103676	99103676	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgagttggaatgataatGaccgaatcccgagaagttat	10	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99103676	99103676	G	A	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	missense	c.9	p.M3I	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	50	0	0	36	4	10	-	-	-	A	99103676	G	A	99103676	3	1	240	1	0	0	0	0	1	0	0	0	17786	1290	45	2	11	2	ZKSCAN5	7	99103676	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	89795	99103676	60034987	1881	20731										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99129216	99129216	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtgaggtcccaccttgttCagcatcagagcgtgcacagt	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99129216	99129216	C	G	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	missense	c.1864	p.Q622E	0.865	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	63	0	0	62	18	22.5	-	-	-	G	99129216	C	G	99129216	3	3	240	1	0	0	0	0	1	0	0	0	17786	827	29	2	1886	2	ZKSCAN5	7	99129216	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25540	99129216	60009447	1882	20732										
ZNF655	0	genome.wustl.edu	37	chr7	99170182	99170182	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgatgcagatcagagagttCttagaatacagaataccgat	9	6	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99170182	99170182	C	G	SNP	ZNF655	ENST00000424881	human	ensembl	69_37n	1	known	missense	c.556	p.L186V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343	35	0	0	38	11	22.45	-	-	-	G	99170182	C	G	99170182	3	3	240	1	0	0	0	0	1	0	0	0	18164	913	32	2	988	2	ZNF655	7	99170182	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40966	99170182	59968481	1883	20733										
ZNF498	0	genome.wustl.edu	37	chr7	99220183	99220183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgctcagcactacctgttCtgcaggcgggtcctggcctc	11	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99220183	99220183	C	G	SNP	ZNF498	ENST00000334715	human	ensembl	69_37n	1	known	missense	c.601	p.L201V	0.927	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	77	0	0	56	20	26.32	-	-	-	G	99220183	C	G	99220183	3	3	240	1	0	0	0	0	1	0	0	0	18043	912	32	2	611	2	ZNF498	7	99220183	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	50001	99220183	59918480	1884	20734										
TRIM4	0	genome.wustl.edu	37	chr7	99516656	99516656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagctctcgaaggcctcgtcGatgggtgccatggcgtgagt	15	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99516656	99516656	G	C	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.369	p.I123M	0.315	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	11	0	0	1	5	83.33	-	-	-	C	99516656	G	C	99516656	3	2	240	1	0	0	0	0	1	0	0	0	16610	1048	37	3	1161	3	TRIM4	7	99516656	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	296473	99516656	59622007	1885	20735										
ZSCAN21	0	genome.wustl.edu	37	chr7	99655492	99655492	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaggagcaggagttcgctCaagatccaagaaaggtccga	14	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99655492	99655492	C	G	SNP	ZSCAN21	ENST00000292450	human	ensembl	69_37n	1	known	missense	c.571	p.Q191E	0.009	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	52	0	0	56	11	16.42	-	-	-	G	99655492	C	G	99655492	3	3	240	1	0	0	0	0	1	0	0	0	18325	827	29	2	577	2	ZSCAN21	7	99655492	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	138836	99655492	59483171	1886	20736										
MCM7	0	genome.wustl.edu	37	chr7	99694950	99694950	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgccagtcgatcaatgtatGacaggagctgagacttggcc	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99694950	99694950	G	A	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	missense	c.1175	p.S392L	1.000	pfam_MCM_DNA-dep_ATPase,pfam_ATPase_dyneun-rel_AAA,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	58	0	0	66	23	25.84	-	-	-	A	99694950	G	A	99694950	3	1	240	1	0	0	0	0	1	0	0	0	9463	1294	45	2	1008	2	MCM7	7	99694950	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39458	99694950	59443713	1887	20737										
C7orf43	0	genome.wustl.edu	37	chr7	99754158	99754158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaacacgggcggtccaagCggacactgggcaggctagga	15	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	99754158	99754158	C	T	SNP	C7orf43	ENST00000316937	human	ensembl	69_37n	-1	known	missense	c.1091	p.R364H	1.000	NULL	NULL	-	no_errors	C7orf43	HGNC	ENSG00000146826	70	0	0	82	40	32.79	-	-	-	T	99754158	C	T	99754158	3	4	240	1	0	0	0	0	1	0	0	0	2416	768	27	1	667	1	C7orf43	7	99754158	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59208	99754158	59384505	1888	20738										
C7orf61	0	genome.wustl.edu	37	chr7	100054573	100054573	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaaaggtgactgcgtcctCacttgggagctgactgaggc	13	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100054573	100054573	C	T	SNP	C7orf61	ENST00000418952	human	ensembl	69_37n	-1	putative	missense	c.547	p.E183K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	C7orf61	HGNC	ENSG00000185955	28	0	0	22	10	31.25	-	-	-	T	100054573	C	T	100054573	3	4	240	1	0	0	0	0	1	0	0	0	2431	813	29	2	201	2	C7orf61	7	100054573	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	300415	100054573	59084090	1889	20739										
SAP25	0	genome.wustl.edu	37	chr7	100170192	100170192	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtttcagggagcccatCatctgaggagagagaatgga	14	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100170192	100170192	C	T	SNP	SAP25	ENST00000538735	human	ensembl	69_37n	-1	known	missense	c.318	p.M106I	0.165	NULL	NULL	-	no_errors	SAP25	HGNC	ENSG00000205307	15	0	0	14	9	39.13	-	-	-	T	100170192	C	T	100170192	3	4	240	1	0	0	0	0	1	0	0	0	13919	826	29	2	285	2	SAP25	7	100170192	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	115619	100170192	58968471	1890	20740										
PCOLCE	0	genome.wustl.edu	37	chr7	100205426	100205426	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcagtgcccccccatgaaGaaaggtaacagagatgtggg	13	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100205426	100205426	G	A	SNP	PCOLCE	ENST00000223061	human	ensembl	69_37n	1	known	silent	c.1179	p.K393	0.999	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_CUB,pfam_Netrin_module_non-TIMP,superfamily_CUB,superfamily_TIMP-like_OB-fold,smart_CUB,smart_Netrin_module_non-TIMP,pfscan_CUB,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333	98	0	0	80	36	31.03	-	-	-	A	100205426	G	A	100205426	2	1	240	1	0	0	0	0	0	0	0	1	11667	933	33	2		2	PCOLCE	7	100205426	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35234	100205426	58933237	1891	20741										
ZAN	0	genome.wustl.edu	37	chr7	100352904	100352904	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttgtcctgcttcgtgcaaGagccccaggcctagctgtgg	13	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100352904	100352904	G	A	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.3180	p.K1060	0.862	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	63	0	0	50	36	41.86	-	-	-	A	100352904	G	A	100352904	2	1	240	1	0	0	0	0	0	0	0	1	17610	933	33	2		2	ZAN	7	100352904	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	147478	100352904	58785759	1892	20742										
SRRT	0	genome.wustl.edu	37	chr7	100484670	100484670	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcattcacttcccttaggtCttggacaagctcctccttta	6	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100484670	100484670	C	G	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	silent	c.1821	p.V607	0.873	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	53	0	0	63	22	25.88	-	-	-	G	100484670	C	G	100484670	2	3	240	1	0	0	0	0	0	0	0	1	15263	900	32	2		2	SRRT	7	100484670	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	131766	100484670	58653993	1893	20743										
ACHE	0	genome.wustl.edu	37	chr7	100490265	100490265	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcctcgggatgcagccagtCtgtgtaatgcaggaccacag	13	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100490265	100490265	C	T	SNP	ACHE	ENST00000442452	human	ensembl	69_37n	-1	known	splice_site	c.168-1	e3-1	1.000	-	-	-	no_errors	ACHE	HGNC	ENSG00000087085	11	0	0	15	10	40	-	-	-	T	100490265	C	T	100490265	5	4	240	1	0	0	0	0	0	0	1	0	141	913	32	2	748	2	ACHE	7	100490265	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5595	100490265	58648398	1894	20744										
ZNHIT1	0	genome.wustl.edu	37	chr7	100867000	100867000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacctgacggcctgtgcggGacccccatcgcggccccagc	12	19	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	100867000	100867000	G	A	SNP	ZNHIT1	ENST00000305105	human	ensembl	69_37n	1	known	missense	c.320	p.G107E	0.049	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT1	HGNC	ENSG00000106400	51	0	0	36	23	38.98	-	-	-	A	100867000	G	A	100867000	3	1	240	1	0	0	0	0	1	0	0	0	18299	1174	41	2	334	2	ZNHIT1	7	100867000	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	376735	100867000	58271663	1895	20745										
LRWD1	0	genome.wustl.edu	37	chr7	102108582	102108582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcaagcgggcgtgtgcctCcccgtcggcccaggtggagg	17	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	102108582	102108582	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	69_37n	1	known	missense	c.752	p.S251F	0.236	NULL	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036	48	0	0	46	13	22.03	-	-	-	T	102108582	C	T	102108582	3	4	240	1	0	0	0	0	1	0	0	0	9113	855	30	2	774	2	LRWD1	7	102108582	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1241582	102108582	57030081	1896	20746										
DNAJC2	0	genome.wustl.edu	37	chr7	102957367	102957367	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttacttccatttccacctCcaccagttgatttctctgtg	4	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	102957367	102957367	C	A	SNP	DNAJC2	ENST00000379263	human	ensembl	69_37n	-1	known	missense	c.1337	p.G446V	1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N	-	no_errors	DNAJC2	HGNC	ENSG00000105821	270	0	0	216	44	16.92	-	-	-	A	102957367	C	A	102957367	3	1	240	1	0	0	0	0	1	0	0	0	4674	855	30	2	548	2	DNAJC2	7	102957367	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	848785	102957367	56181296	1897	20747										
SLC26A5	0	genome.wustl.edu	37	chr7	103018192	103018192	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactattgggggatattttaCttcaccatcctcttcttcag	6	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	103018192	103018192	C	G	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	missense	c.1840	p.V614L	0.050	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	95	0	0	51	15	22.73	-	-	-	G	103018192	C	G	103018192	3	3	240	1	0	0	0	0	1	0	0	0	14609	565	20	4	447	4	SLC26A5	7	103018192	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60825	103018192	56120471	1898	20748										
RELN	0	genome.wustl.edu	37	chr7	103207129	103207129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatggaaatgatctgtggttCcaggaaggacatgaagtcca	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	103207129	103207129	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4666	p.E1556K	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	61	0	0	45	21	31.82	-	-	-	T	103207129	C	T	103207129	3	4	240	1	0	0	0	0	1	0	0	0	13303	864	30	2	5852	2	RELN	7	103207129	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	188937	103207129	55931534	1899	20749										
RELN	0	genome.wustl.edu	37	chr7	103473983	103473983	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagacactttgggtacttaCatgaaattcacacagcctgt	8	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	103473983	103473983	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	splice_site	c.473+1	e3+1	1.000	-	-	-	no_errors	RELN	HGNC	ENSG00000189056	48	0	0	46	15	24.59	-	-	-	T	103473983	C	T	103473983	5	4	240	1	0	0	0	0	0	0	1	0	13303	492	17	4	10160	4	RELN	7	103473983	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	266854	103473983	55664680	1900	20750										
SRPK2	0	genome.wustl.edu	37	chr7	104807828	104807828	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagtaaaggatacgtatCccattcatgcctgaaatctt	8	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	104807828	104807828	C	G	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	silent	c.510	p.G170	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	90	0	0	59	13	18.06	-	-	-	G	104807828	C	G	104807828	2	3	240	1	0	0	0	0	0	0	0	1	15251	842	30	2		2	SRPK2	7	104807828	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1333845	104807828	54330835	1901	20751										
PUS7	0	genome.wustl.edu	37	chr7	105098242	105098242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggacaaggtactgctcagcGaagccaggttgtattcagct	12	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	105098242	105098242	G	A	SNP	PUS7	ENST00000356362	human	ensembl	69_37n	-1	known	missense	c.1981	p.R661C	1.000	NULL	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127	178	0	0	117	75	39.06	-	-	-	A	105098242	G	A	105098242	3	1	240	1	0	0	0	0	1	0	0	0	12916	1058	37	1	8	1	PUS7	7	105098242	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	290414	105098242	54040421	1902	20752										
ATXN7L1	0	genome.wustl.edu	37	chr7	105279964	105279964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggatcttgtgcaaggtttCtttgtctcgggatccaatac	11	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	105279964	105279964	C	G	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	missense	c.915	p.K305N	1.000	pfam_SCA7_dom	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	128	0	0	125	31	19.87	-	-	-	G	105279964	C	G	105279964	3	3	240	1	0	0	0	0	1	0	0	0	1220	912	32	2	1701	2	ATXN7L1	7	105279964	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	181722	105279964	53858699	1903	20753										
CDHR3	0	genome.wustl.edu	37	chr7	105635275	105635275	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacaacagaattggactttGaagcaggacacagaaggtag	11	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	105635275	105635275	G	C	SNP	CDHR3	ENST00000317716	human	ensembl	69_37n	1	known	missense	c.592	p.E198Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536	104	0	0	101	32	24.06	-	-	-	C	105635275	G	C	105635275	3	2	240	1	0	0	0	0	1	0	0	0	3149	1291	45	2	610	2	CDHR3	7	105635275	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	355311	105635275	53503388	1904	20754										
COG5	0	genome.wustl.edu	37	chr7	106850996	106850996	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaggagcctgtccttttCagatggatggtcatccagcc	13	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	106850996	106850996	C	G	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.2443	p.E815Q	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	38	0	0	36	25	40.98	-	-	-	G	106850996	C	G	106850996	3	3	240	1	0	0	0	0	1	0	0	0	3691	835	29	2	151	2	COG5	7	106850996	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1215721	106850996	52287667	1905	20755										
COG5	0	genome.wustl.edu	37	chr7	107167692	107167692	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaacttaccaagttcattGagactctgagcagcttttgt	7	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107167692	107167692	G	A	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	silent	c.621	p.L207	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	179	0	0	151	44	22.56	-	-	-	A	107167692	G	A	107167692	2	1	240	1	0	0	0	0	0	0	0	1	3691	1277	45	2		2	COG5	7	107167692	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	316696	107167692	51970971	1906	20756										
BCAP29	0	genome.wustl.edu	37	chr7	107262380	107262380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggagcatgcaggacagatCtgtaatggcctgaactgaat	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107262380	107262380	C	G	SNP	BCAP29	ENST00000491150	human	ensembl	69_37n	1	novel	missense	c.867	p.I289M	0.021	NULL	pfam_Bap31	-	no_start_codon	BCAP29	HGNC	ENSG00000075790	65	0	0	59	21	26.25	-	-	-	G	107262380	C	G	107262380	3	3	240	1	0	0	0	0	1	0	0	0	1350	928	32	2		2	BCAP29	7	107262380	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94688	107262380	51876283	1907	20757										
SLC26A4	0	genome.wustl.edu	37	chr7	107312589	107312589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatgtgctttcagggatggCatatgccctactagctgcag	12	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107312589	107312589	C	T	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.311	p.A104V	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	131	0	0	125	43	25.6	-	-	-	T	107312589	C	T	107312589	3	4	240	1	0	0	0	0	1	0	0	0	14608	710	25	4	321	4	SLC26A4	7	107312589	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	50209	107312589	51826074	1908	20758										
SLC26A4	0	genome.wustl.edu	37	chr7	107329622	107329622	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtatatgccaccaagtatGattacaccatcgatgggaac	8	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107329622	107329622	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.1126	p.D376N	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	121	0	0	122	21	14.69	-	-	-	A	107329622	G	A	107329622	3	1	240	1	0	0	0	0	1	0	0	0	14608	1290	45	2	1156	2	SLC26A4	7	107329622	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17033	107329622	51809041	1909	20759										
LAMB4	0	genome.wustl.edu	37	chr7	107692599	107692599	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttcttcctgaaggtcttCaagtaagaggtctgcttcat	8	8	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107692599	107692599	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.3859	p.E1287K	0.403	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	229	1	0.43	175	34	16.27	-	-	-	T	107692599	C	T	107692599	3	4	240	1	0	0	0	0	1	0	0	0	8667	835	29	2	1462	2	LAMB4	7	107692599	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	362977	107692599	51446064	1910	20760										
LAMB4	0	genome.wustl.edu	37	chr7	107696107	107696107	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgataatccttgacttttAagaatttcccagatgggaaa	7	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107696107	107696107	A	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	nonsense	c.3725	p.L1242*	0.973	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	67	0	0	35	25	41.67	-	-	-	T	107696107	A	T	107696107	4	4	240	1	0	0	0	0	0	1	0	0	8667	372	13	5	1600	5	LAMB4	7	107696107	Nonsense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	3508	107696107	51442556	1911	20761										
NRCAM	0	genome.wustl.edu	37	chr7	107866111	107866111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccataaaactcagtgtcactCaaattagcagctatagtgtc	6	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107866111	107866111	C	G	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.756	p.L252F	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	73	0	0	65	30	31.58	-	-	-	G	107866111	C	G	107866111	3	3	240	1	0	0	0	0	1	0	0	0	10717	825	29	2	3284	2	NRCAM	7	107866111	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	170004	107866111	51272552	1912	20762										
NRCAM	0	genome.wustl.edu	37	chr7	107880462	107880462	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaagagaatcaggggcactCtgcccgcagataagcgcttc	13	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	107880462	107880462	C	G	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.47	p.R16T	0.818	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	97	0	0	74	15	16.85	-	-	-	G	107880462	C	G	107880462	3	3	240	1	0	0	0	0	1	0	0	0	10717	913	32	2	4017	2	NRCAM	7	107880462	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14351	107880462	51258201	1913	20763										
LRRN3	0	genome.wustl.edu	37	chr7	110764740	110764740	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtcttggaggccttctgGggattattggtgtgatatgt	14	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	110764740	110764740	G	C	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	missense	c.1912	p.G638R	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	51	0	0	58	18	23.68	-	-	-	C	110764740	G	C	110764740	3	2	240	1	0	0	0	0	1	0	0	0	9102	1232	43	4	1914	4	LRRN3	7	110764740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2884278	110764740	48373923	1914	20764										
DOCK4	0	genome.wustl.edu	37	chr7	111517158	111517158	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgtggccttcatggcttGattattattcccaaggaaaa	8	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	111517158	111517158	G	C	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.1672	p.Q558E	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	102	0	0	71	26	26.26	-	-	-	C	111517158	G	C	111517158	3	2	240	1	0	0	0	0	1	0	0	0	4724	1299	45	2	4372	2	DOCK4	7	111517158	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	752418	111517158	47621505	1915	20765										
ZNF277	0	genome.wustl.edu	37	chr7	111935989	111935989	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatttttgtagtgtaataaGaattaattccactgctccat	6	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	111935989	111935989	G	A	SNP	ZNF277	ENST00000361822	human	ensembl	69_37n	1	known	missense	c.359	p.R120K	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839	120	0	0	88	24	21.43	-	-	-	A	111935989	G	A	111935989	3	1	240	1	0	0	0	0	1	0	0	0	17908	942	33	2	369	2	ZNF277	7	111935989	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	418831	111935989	47202674	1916	20766										
PPP1R3A	0	genome.wustl.edu	37	chr7	113519643	113519643	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccttagaagatccttcttCtgttgattctttgagacatg	7	8	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	113519643	113519643	C	T	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.1504	p.E502K	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	68	0	0	60	16	21.05	-	-	-	T	113519643	C	T	113519643	3	4	240	1	0	0	0	0	1	0	0	0	12448	922	32	2	1868	2	PPP1R3A	7	113519643	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1583654	113519643	45619020	1917	20767										
PPP1R3A	0	genome.wustl.edu	37	chr7	113558909	113558909	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggtatatgtcttcagaaGaatcagaacctcgtctactt	7	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	113558909	113558909	G	C	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.143	p.S48C	0.998	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	49	0	0	39	10	20.41	-	-	-	C	113558909	G	C	113558909	3	2	240	1	0	0	0	0	1	0	0	0	12448	942	33	2	3241	2	PPP1R3A	7	113558909	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39266	113558909	45579754	1918	20768										
CAV1	0	genome.wustl.edu	37	chr7	116166580	116166580	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgccctccgccctctgcaggGacatctctacaccgttccca	7	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	116166580	116166580	G	C	SNP	CAV1	ENST00000341049	human	ensembl	69_37n	1	known	missense	c.32	p.G11A	1.000	NULL	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974	34	0	0	41	25	37.88	-	-	-	C	116166580	G	C	116166580	3	2	240	1	0	0	0	0	1	0	0	0	2718	1188	41	2	38	2	CAV1	7	116166580	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2607671	116166580	42972083	1919	20769										
MET	0	genome.wustl.edu	37	chr7	116395450	116395450	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgaaggagggacaaggctGaccatatgtggctgggactt	15	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	116395450	116395450	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	silent	c.1743	p.L581	0.996	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	93	0	0	65	38	36.89	-	-	-	A	116395450	G	A	116395450	2	1	240	1	0	0	0	0	0	0	0	1	9556	1277	45	2		2	MET	7	116395450	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	228870	116395450	42743213	1920	20770										
MET	0	genome.wustl.edu	37	chr7	116411936	116411936	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attagttcgctacgatgcaaGagtacacactcctcatttgg	8	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	116411936	116411936	G	C	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.2975	p.R992T	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	50	0	0	48	14	22.58	-	-	-	C	116411936	G	C	116411936	3	2	240	1	0	0	0	0	1	0	0	0	9556	942	33	2	3025	2	MET	7	116411936	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16486	116411936	42726727	1921	20771										
CFTR	0	genome.wustl.edu	37	chr7	117267675	117267675	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatggccaactctcgaaaGttatgattattgagaattca	8	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	117267675	117267675	G	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.3568	p.V1190L	0.309	tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	66	0	0	54	18	25	-	-	-	C	117267675	G	C	117267675	3	2	240	1	0	0	0	0	1	0	0	0	3323	1029	36	4	3654	4	CFTR	7	117267675	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	855739	117267675	41870988	1922	20772										
AASS	0	genome.wustl.edu	37	chr7	121755167	121755167	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccttccacaccagcaggtGagaacttgcccggagccagg	12	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	121755167	121755167	G	A	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	missense	c.1004	p.S335L	0.641	pfam_AlaDH/PNT_NAD(H)-bd	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	134	0	0	129	30	18.87	-	-	-	A	121755167	G	A	121755167	3	1	240	1	0	0	0	0	1	0	0	0	24	1294	45	2	1840	2	AASS	7	121755167	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4487492	121755167	37383496	1923	20773										
AASS	0	genome.wustl.edu	37	chr7	121769564	121769564	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttcagaaatatcctcctGaagaatgccaccagctttga	7	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	121769564	121769564	G	A	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	nonsense	c.238	p.Q80*	1.000	pfam_AlaDH/PNT_N	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	82	0	0	41	29	41.43	-	-	-	A	121769564	G	A	121769564	4	1	240	1	0	0	0	0	0	1	0	0	24	1299	45	2	2630	2	AASS	7	121769564	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14397	121769564	37369099	1924	20774										
CADPS2	0	genome.wustl.edu	37	chr7	122526107	122526107	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggcgttgaaggggtacgcGatgcacctcacgacgaagac	14	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	122526107	122526107	G	T	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	silent	c.285	p.I95	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	22	0	0	24	10	29.41	-	-	-	T	122526107	G	T	122526107	2	4	240	1	0	0	0	0	0	0	0	1	2596	1048	37	3		3	CADPS2	7	122526107	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	756543	122526107	36612556	1925	20775										
SLC13A1	0	genome.wustl.edu	37	chr7	122774486	122774486	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatcctaggaaaagccactGaagccagatccaggataaga	10	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	122774486	122774486	G	T	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.910	p.Q304K	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	76	0	0	73	42	36.52	-	-	-	T	122774486	G	T	122774486	3	4	240	1	0	0	0	0	1	0	0	0	14480	1299	45	2	909	2	SLC13A1	7	122774486	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	248379	122774486	36364177	1926	20776										
SLC13A1	0	genome.wustl.edu	37	chr7	122811951	122811951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaatccttgaaataagcaGatgccacctgaaataacaat	6	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	122811951	122811951	G	C	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.236	p.S79C	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	98	0	0	75	19	20.21	-	-	-	C	122811951	G	C	122811951	3	2	240	1	0	0	0	0	1	0	0	0	14480	942	33	2	1603	2	SLC13A1	7	122811951	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37465	122811951	36326712	1927	20777										
IQUB	0	genome.wustl.edu	37	chr7	123104907	123104907	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaaggtattttgcaacttCaggattaaacagaggtgttt	9	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	123104907	123104907	C	T	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	missense	c.1738	p.E580K	0.999	NULL	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	106	0	0	63	30	32.26	-	-	-	T	123104907	C	T	123104907	3	4	240	1	0	0	0	0	1	0	0	0	7874	835	29	2	653	2	IQUB	7	123104907	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	292956	123104907	36033756	1928	20778										
FLNC	0	genome.wustl.edu	37	chr7	128486124	128486124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcggcaaccacgtgacggctCgtgtgctcaacccctcgggg	14	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	128486124	128486124	C	G	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.3871	p.R1291G	0.662	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	10	0	0	18	8	30.77	-	-	-	G	128486124	C	G	128486124	3	3	240	1	0	0	0	0	1	0	0	0	5981	884	31	3	3957	3	FLNC	7	128486124	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5381217	128486124	30652539	1929	20779										
TNPO3	0	genome.wustl.edu	37	chr7	128630066	128630066	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcatctctccaaccaattCaatgctggtgtatcgcacag	6	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	128630066	128630066	C	A	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	nonsense	c.1549	p.E517*	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	110	0	0	103	23	18.25	-	-	-	A	128630066	C	A	128630066	4	1	240	1	0	0	0	0	0	1	0	0	16432	835	29	2	1372	2	TNPO3	7	128630066	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	143942	128630066	30508597	1930	20780										
TNPO3	0	genome.wustl.edu	37	chr7	128658037	128658037	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaataacaggtgacaagtCtttcaagttctggatatggg	10	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	128658037	128658037	C	G	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.295	p.D99H	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	145	0	0	86	47	35.34	-	-	-	G	128658037	C	G	128658037	3	3	240	1	0	0	0	0	1	0	0	0	16432	913	32	2	2560	2	TNPO3	7	128658037	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27971	128658037	30480626	1931	20781										
CPA2	0	genome.wustl.edu	37	chr7	129916570	129916570	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatggatacgtgttctctCaaaccaaagtaagcctggat	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	129916570	129916570	C	T	SNP	CPA2	ENST00000222481	human	ensembl	69_37n	1	known	nonsense	c.688	p.Q230*	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516	160	0	0	124	62	33.33	-	-	-	T	129916570	C	T	129916570	4	4	240	1	0	0	0	0	0	1	0	0	3820	827	29	2	714	2	CPA2	7	129916570	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1258533	129916570	29222093	1932	20782										
COPG2	0	genome.wustl.edu	37	chr7	130295837	130295837	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacttacccatcctcagtttCttttagtaagcgactggcaa	6	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	130295837	130295837	C	G	SNP	COPG2	ENST00000445977	human	ensembl	69_37n	-1	known	missense	c.724	p.E242Q	1.000	superfamily_ARM-type_fold	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	-	no_errors	COPG2	HGNC	ENSG00000158623	95	0	0	100	35	25.74	-	-	-	G	130295837	C	G	130295837	3	3	240	1	0	0	0	0	1	0	0	0	3762	922	32	2	502	2	COPG2	7	130295837	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	379267	130295837	28842826	1933	20783										
PLXNA4	0	genome.wustl.edu	37	chr7	131859547	131859547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcttctcacctcaaggtccCggaggacagggtggtcttca	12	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	131859547	131859547	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.4007	p.R1336Q	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	52	0	0	57	11	16.18	-	-	-	T	131859547	C	T	131859547	3	4	240	1	0	0	0	0	1	0	0	0	12196	652	23	1	1725	1	PLXNA4	7	131859547	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1563710	131859547	27279116	1934	20784										
PLXNA4	0	genome.wustl.edu	37	chr7	132169688	132169688	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacacacagcatctgttcctGagaagcaatgttcgccccag	8	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	132169688	132169688	G	A	SNP	PLXNA4	ENST00000378539	human	ensembl	69_37n	-1	known	nonsense	c.1456	p.Q486*	0.001	superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	58	0	0	65	20	23.53	-	-	-	A	132169688	G	A	132169688	4	1	240	1	0	0	0	0	0	1	0	0	12196	1299	45	2	4658	2	PLXNA4	7	132169688	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	310141	132169688	26968975	1935	20785										
PLXNA4	0	genome.wustl.edu	37	chr7	132174105	132174105	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagagagtggttcttgtaGacatatgcgatgacagacgt	13	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	132174105	132174105	G	C	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.1317	p.V439	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	58	0	0	61	12	16.44	-	-	-	C	132174105	G	C	132174105	2	2	240	1	0	0	0	0	0	0	0	1	12196	929	33	2		2	PLXNA4	7	132174105	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4417	132174105	26964558	1936	20786										
EXOC4	0	genome.wustl.edu	37	chr7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcaaaagcaaagacccctCggggctgctcatctctgtga	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	132937919	132937919	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.62	p.S21L	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	59	0	0	61	13	17.57	-	-	-	T	132937919	C	T	132937919	3	4	240	1	0	0	0	0	1	0	0	0	5342	893	31	1	64	1	EXOC4	7	132937919	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	763814	132937919	26200744	1937	20787										
CALD1	0	genome.wustl.edu	37	chr7	134617752	134617752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtacagtgtgcctgacgagGaggccaagacaaccaccaca	11	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	134617752	134617752	G	A	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.232	p.E78K	0.995	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	30	0	0	27	6	18.18	-	-	-	A	134617752	G	A	134617752	3	1	240	1	0	0	0	0	1	0	0	0	2606	1175	41	2	299	2	CALD1	7	134617752	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1679833	134617752	24520911	1938	20788										
TMEM140	0	genome.wustl.edu	37	chr7	134849412	134849412	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccctgagctggaagccctGggggtgcctcgggttggcct	16	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	134849412	134849412	G	C	SNP	TMEM140	ENST00000275767	human	ensembl	69_37n	1	known	silent	c.219	p.L73	0.939	NULL	NULL	-	no_errors	TMEM140	HGNC	ENSG00000146859	51	0	0	49	29	37.18	-	-	-	C	134849412	G	C	134849412	2	2	240	1	0	0	0	0	0	0	0	1	16150	1335	47	4		4	TMEM140	7	134849412	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	231660	134849412	24289251	1939	20789										
NUP205	0	genome.wustl.edu	37	chr7	135323340	135323340	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggaatattgccagtcactCatgttacagagttcccctac	7	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	135323340	135323340	C	T	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	silent	c.5301	p.L1767	1.000	NULL	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	193	0	0	170	50	22.73	-	-	-	T	135323340	C	T	135323340	2	4	240	1	0	0	0	0	0	0	0	1	10832	813	29	2		2	NUP205	7	135323340	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	473928	135323340	23815323	1940	20790										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138430011	138430011	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagatagcgcccgtggaaGaaggtgttccaaatctggcc	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	138430011	138430011	G	A	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	silent	c.1335	p.F445	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	96	0	0	92	26	22.03	-	-	-	A	138430011	G	A	138430011	2	1	240	1	0	0	0	0	0	0	0	1	1174	933	33	2		2	ATP6V0A4	7	138430011	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3106671	138430011	20708652	1941	20791										
KIAA1549	0	genome.wustl.edu	37	chr7	138601600	138601600	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcgagagtgaaggcagtCacgggacgcagggatggcag	18	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	138601600	138601600	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	silent	c.2772	p.V924	0.001	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	43	0	0	40	23	36.51	-	-	-	T	138601600	C	T	138601600	2	4	240	1	0	0	0	0	0	0	0	1	8296	813	29	2		2	KIAA1549	7	138601600	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	171589	138601600	20537063	1942	20792										
KIAA1549	0	genome.wustl.edu	37	chr7	138603449	138603449	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacctcctctggaggctgtGagacctcccccaaggagggc	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	138603449	138603449	G	C	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	nonsense	c.923	p.S308*	0.102	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	27	0	0	30	10	25	-	-	-	C	138603449	G	C	138603449	4	2	240	1	0	0	0	0	0	1	0	0	8296	1294	45	2	5005	2	KIAA1549	7	138603449	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1849	138603449	20535214	1943	20793										
TTC26	0	genome.wustl.edu	37	chr7	138872262	138872262	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgtgggcattttccagatGatcatagctgggagagaacc	13	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	138872262	138872262	G	A	SNP	TTC26	ENST00000464848	human	ensembl	69_37n	1	known	missense	c.1530	p.M510I	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948	99	0	0	90	36	28.57	-	-	-	A	138872262	G	A	138872262	3	1	240	1	0	0	0	0	1	0	0	0	16791	1290	45	2	1596	2	TTC26	7	138872262	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	268813	138872262	20266401	1944	20794										
JHDM1D	0	genome.wustl.edu	37	chr7	139799810	139799810	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaattttccattcagtttaGagctcaagatgtcctgaagg	9	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	139799810	139799810	G	C	SNP	JHDM1D	ENST00000397560	human	ensembl	69_37n	-1	known	missense	c.1652	p.S551C	0.999	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459	215	0	0	120	62	34.07	-	-	-	C	139799810	G	C	139799810	3	2	240	1	0	0	0	0	1	0	0	0	8002	942	33	2	1205	2	JHDM1D	7	139799810	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	927548	139799810	19338853	1945	20795										
ADCK2	0	genome.wustl.edu	37	chr7	140373731	140373731	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggagcatcctctcttttGagaaccgggaacctgtgggc	15	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	140373731	140373731	G	C	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	1	known	missense	c.601	p.E201Q	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	29	0	0	24	9	27.27	-	-	-	C	140373731	G	C	140373731	3	2	240	1	0	0	0	0	1	0	0	0	289	1291	45	2	603	2	ADCK2	7	140373731	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	573921	140373731	18764932	1946	20796										
ADCK2	0	genome.wustl.edu	37	chr7	140386848	140386848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaaacatcctggttcaggGtgccaacggcctgtcctcga	12	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	140386848	140386848	G	A	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	1	known	missense	c.1364	p.G455D	0.995	superfamily_Kinase-like_dom	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	80	0	0	64	20	23.81	-	-	-	A	140386848	G	A	140386848	3	1	240	1	0	0	0	0	1	0	0	0	289	1261	44	4	1382	4	ADCK2	7	140386848	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13117	140386848	18751815	1947	20797										
BRAF	0	genome.wustl.edu	37	chr7	140481463	140481463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatcaggaatctcccaatCatcactcgagtcccgtctac	5	17	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	140481463	140481463	C	T	SNP	BRAF	ENST00000288602	human	ensembl	69_37n	-1	known	missense	c.1345	p.D449N	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	122	0	0	95	20	17.39	-	-	-	T	140481463	C	T	140481463	3	4	240	1	0	0	0	0	1	0	0	0	1504	826	29	2	987	2	BRAF	7	140481463	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94615	140481463	18657200	1948	20798										
TAS2R5	0	genome.wustl.edu	37	chr7	141490369	141490369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttggacttaagcttgtttCcacttttccagagcagccgt	8	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	141490369	141490369	C	T	SNP	TAS2R5	ENST00000247883	human	ensembl	69_37n	1	known	missense	c.208	p.P70S	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R5	HGNC	ENSG00000127366	141	0	0	105	48	31.37	-	-	-	T	141490369	C	T	141490369	3	4	240	1	0	0	0	0	1	0	0	0	15675	855	30	2	210	2	TAS2R5	7	141490369	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1008906	141490369	17648294	1949	20799										
EPHA1	0	genome.wustl.edu	37	chr7	143090942	143090942	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcaaccggtacccatcctCaatgctcttcataacctgca	7	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	143090942	143090942	C	A	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	nonsense	c.2518	p.E840*	0.988	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	44	0	0	57	13	18.57	-	-	-	A	143090942	C	A	143090942	4	1	240	1	0	0	0	0	0	1	0	0	5202	835	29	2	424	2	EPHA1	7	143090942	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1600573	143090942	16047721	1950	20800										
ARHGEF5	0	genome.wustl.edu	37	chr7	144068317	144068317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctaaacatagctgtggatCatttccaactttcaacttca	5	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	144068317	144068317	C	T	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.3595	p.H1199Y	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	149	0	0	162	21	11.48	-	-	-	T	144068317	C	T	144068317	3	4	240	1	0	0	0	0	1	0	0	0	911	826	29	2	3613	2	ARHGEF5	7	144068317	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	977375	144068317	15070346	1951	20801										
NOBOX	0	genome.wustl.edu	37	chr7	144097244	144097244	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actctgcaattcgagtgtttCaatggtgggccctccgccac	10	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	144097244	144097244	C	T	SNP	NOBOX	ENST00000467773	human	ensembl	69_37n	-1	known	missense	c.1006	p.E336K	0.000	smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	NOBOX	HGNC	ENSG00000106410	52	0	0	47	6	11.32	-	-	-	T	144097244	C	T	144097244	3	4	240	1	0	0	0	0	1	0	0	0	10584	841	29	2		2	NOBOX	7	144097244	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28927	144097244	15041419	1952	20802										
NOBOX	0	genome.wustl.edu	37	chr7	144097267	144097267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgggccctccgccactcCaccctgccaccagtgagccg	11	19	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	144097267	144097267	C	A	SNP	NOBOX	ENST00000467773	human	ensembl	69_37n	-1	known	missense	c.983	p.W328L	0.000	smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	NOBOX	HGNC	ENSG00000106410	53	0	0	39	15	27.78	-	-	-	A	144097267	C	A	144097267	3	1	240	1	0	0	0	0	1	0	0	0	10584	609	21	4		4	NOBOX	7	144097267	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23	144097267	15041396	1953	20803										
CNTNAP2	0	genome.wustl.edu	37	chr7	146805303	146805303	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agattcagaaacaagaagatGaaaacactgaaagatgtcat	8	5	2	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	146805303	146805303	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.615	p.M205I	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	95	0	0	64	14	17.95	-	-	-	A	146805303	G	A	146805303	3	1	240	1	0	0	0	0	1	0	0	0	3677	1290	45	2	633	2	CNTNAP2	7	146805303	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2708036	146805303	12333360	1954	20804										
ZNF786	0	genome.wustl.edu	37	chr7	148768317	148768317	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcactggtgggtgaagcctCtgccacactcgctacaggag	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	148768317	148768317	C	G	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.1547	p.R516T	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	11	0	0	20	10	33.33	-	-	-	G	148768317	C	G	148768317	3	3	240	1	0	0	0	0	1	0	0	0	18251	913	32	2	805	2	ZNF786	7	148768317	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1963014	148768317	10370346	1955	20805										
ZNF786	0	genome.wustl.edu	37	chr7	148769161	148769161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggaagtgcctctgtacccGagggctgctccacggcatct	12	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	148769161	148769161	G	A	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.703	p.R235W	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	19	0	0	17	16	47.06	-	-	-	A	148769161	G	A	148769161	3	1	240	1	0	0	0	0	1	0	0	0	18251	1057	37	1	1649	1	ZNF786	7	148769161	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	844	148769161	10369502	1956	20806										
ZNF398	0	genome.wustl.edu	37	chr7	148863295	148863295	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatctacttttccactccaGagtgggaaaaattagaagaa	7	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	148863295	148863295	G	C	SNP	ZNF398	ENST00000540950	human	ensembl	69_37n	1	known	missense	c.481	p.E161Q	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024	100	0	0	55	30	35.29	-	-	-	C	148863295	G	C	148863295	3	2	240	1	0	0	0	0	1	0	0	0	17981	943	33	2	476	2	ZNF398	7	148863295	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	94134	148863295	10275368	1957	20807										
ZNF282	0	genome.wustl.edu	37	chr7	148909462	148909462	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaagtagactccccaatttCtgcccaggacctcttgtccc	7	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	148909462	148909462	C	T	SNP	ZNF282	ENST00000262085	human	ensembl	69_37n	1	known	missense	c.965	p.S322F	0.993	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265	88	0	0	56	16	22.22	-	-	-	T	148909462	C	T	148909462	3	4	240	1	0	0	0	0	1	0	0	0	17915	913	32	2	987	2	ZNF282	7	148909462	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46167	148909462	10229201	1958	20808										
ZNF212	0	genome.wustl.edu	37	chr7	148950660	148950660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactttgcagcaggtggggtCatgatcaaacaggagctaca	12	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	148950660	148950660	C	T	SNP	ZNF212	ENST00000481584	human	ensembl	69_37n	1	putative	missense	c.382	p.H128Y	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	ZNF212	HGNC	ENSG00000170260	18	0	0	23	9	28.12	-	-	-	T	148950660	C	T	148950660	3	4	240	1	0	0	0	0	1	0	0	0	17864	813	29	2	660	2	ZNF212	7	148950660	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41198	148950660	10188003	1959	20809										
SSPO	0	genome.wustl.edu	37	chr7	149476192	149476192	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctggaggctccctggctCggaggtgaggctgccactgg	16	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	149476192	149476192	C	A	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	47	0	0	41	15	26.79	-	-	-	A	149476192	C	A	149476192	1	1	240	0	1	0	0	0	0	0	0	0	15280	893	31	3		3	SSPO	7	149476192	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	525532	149476192	9662471	1960	20810										
SSPO	0	genome.wustl.edu	37	chr7	149484608	149484608	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgcccactcctggcgcctCagccccctctgccctgagcc	9	22	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	149484608	149484608	C	G	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	16	0	0	16	12	42.86	-	-	-	G	149484608	C	G	149484608	1	3	240	0	1	0	0	0	0	0	0	0	15280	813	29	2		2	SSPO	7	149484608	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8416	149484608	9654055	1961	20811										
ATP6V0E2	0	genome.wustl.edu	37	chr7	149576677	149576677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgctctggagtttgccctCtttcccaaggagatgctgct	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	149576677	149576677	C	G	SNP	ATP6V0E2	ENST00000421974	human	ensembl	69_37n	1	known	missense	c.553	p.L185V	0.003	NULL	pfam_ATPase_V0-cplx_esu	-	no_errors	ATP6V0E2	HGNC	ENSG00000171130	82	0	0	45	32	41.56	-	-	-	G	149576677	C	G	149576677	3	3	240	1	0	0	0	0	1	0	0	0	1180	913	32	2	661	2	ATP6V0E2	7	149576677	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92069	149576677	9561986	1962	20812										
GIMAP8	0	genome.wustl.edu	37	chr7	150171337	150171337	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgatgctccggacatctCatctttaaagaacattgact	6	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	150171337	150171337	C	A	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	nonsense	c.920	p.S307*	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	46	0	0	72	14	16.28	-	-	-	A	150171337	C	A	150171337	4	1	240	1	0	0	0	0	0	1	0	0	6437	838	29	2	930	2	GIMAP8	7	150171337	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	594660	150171337	8967326	1963	20813										
GIMAP4	0	genome.wustl.edu	37	chr7	150269546	150269546	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggccgttacactgaggaaGagcacaaagccacagagaag	13	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	150269546	150269546	G	C	SNP	GIMAP4	ENST00000255945	human	ensembl	69_37n	1	known	missense	c.388	p.E130Q	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP4	HGNC	ENSG00000133574	36	0	0	43	26	37.68	-	-	-	C	150269546	G	C	150269546	3	2	240	1	0	0	0	0	1	0	0	0	6433	943	33	2	394	2	GIMAP4	7	150269546	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98209	150269546	8869117	1964	20814										
GIMAP5	0	genome.wustl.edu	37	chr7	150439311	150439311	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgcaacaccaccggcattGaggattatcctagtgggcaa	10	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	150439311	150439311	G	C	SNP	GIMAP5	ENST00000358647	human	ensembl	69_37n	1	known	missense	c.84	p.L28F	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP5	HGNC	ENSG00000196329	44	0	0	40	5	11.11	-	-	-	C	150439311	G	C	150439311	3	2	240	1	0	0	0	0	1	0	0	0	6434	1281	45	2	90	2	GIMAP5	7	150439311	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	169765	150439311	8699352	1965	20815										
ABP1	0	genome.wustl.edu	37	chr7	150558196	150558196	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactgtgatcgtgtggcctCgggacaacggccccaactac	11	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	150558196	150558196	C	A	SNP	ABP1	ENST00000416793	human	ensembl	69_37n	1	known	silent	c.2212	p.R738	0.010	superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	ABP1	HGNC	ENSG00000002726	39	0	0	30	21	41.18	-	-	-	A	150558196	C	A	150558196	2	1	240	1	0	0	0	0	0	0	0	1	98	875	31	3		3	ABP1	7	150558196	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118885	150558196	8580467	1966	20816										
SLC4A2	0	genome.wustl.edu	37	chr7	150771920	150771920	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcttcatggagacacaGatcaccacgtgagtggtcct	9	12	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	150771920	150771920	G	C	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.3039	p.Q1013H	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	62	0	0	61	14	18.67	-	-	-	C	150771920	G	C	150771920	3	2	240	1	0	0	0	0	1	0	0	0	14743	933	33	2	3109	2	SLC4A2	7	150771920	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	213724	150771920	8366743	1967	20817										
GALNTL5	0	genome.wustl.edu	37	chr7	151711821	151711821	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaaaccttctacaatcatCagtgctatgacacataacta	5	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151711821	151711821	C	T	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	silent	c.1119	p.I373	0.000	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	90	0	0	61	36	37.11	-	-	-	T	151711821	C	T	151711821	2	4	240	1	0	0	0	0	0	0	0	1	6274	816	29	2		2	GALNTL5	7	151711821	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	939901	151711821	7426842	1968	20818										
GALNT11	0	genome.wustl.edu	37	chr7	151818672	151818672	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtcggttggacagtgcctGagagcagtggatcccctggg	17	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151818672	151818672	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	silent	c.1737	p.L579	0.997	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234	90	0	0	61	36	37.11	-	-	-	A	151818672	G	A	151818672	2	1	240	1	0	0	0	0	0	0	0	1	6259	1277	45	2		2	GALNT11	7	151818672	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106851	151818672	7319991	1969	20819										
MLL3	0	genome.wustl.edu	37	chr7	151845982	151845982	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttattgagcggcctgcaatCttcaaacccaccatggacag	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151845982	151845982	C	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.13201	p.D4401H	0.907	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	89	0	0	77	29	27.36	-	-	-	G	151845982	C	G	151845982	3	3	240	1	0	0	0	0	1	0	0	0	9693	913	32	2	1737	2	MLL3	7	151845982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27310	151845982	7292681	1970	20820										
MLL3	0	genome.wustl.edu	37	chr7	151859492	151859492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgggcaggactctgtctCagccttttccagttttatct	9	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151859492	151859492	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.11170	p.E3724K	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	114	0	0	116	30	20.55	-	-	-	T	151859492	C	T	151859492	3	4	240	1	0	0	0	0	1	0	0	0	9693	835	29	2	3633	2	MLL3	7	151859492	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13510	151859492	7279171	1971	20821										
MLL3	0	genome.wustl.edu	37	chr7	151860872	151860872	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctgtttgatccgataatCttcaatcaattcagcatgtt	6	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151860872	151860872	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.9790	p.D3264N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	145	0	0	123	32	20.65	-	-	-	T	151860872	C	T	151860872	3	4	240	1	0	0	0	0	1	0	0	0	9693	913	32	2	5013	2	MLL3	7	151860872	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1380	151860872	7277791	1972	20822										
MLL3	0	genome.wustl.edu	37	chr7	151877802	151877802	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaatgtgtttacctgtctCaatttctctgtatctgcttg	6	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151877802	151877802	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.7143	p.L2381	0.876	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	63	0	0	64	16	20	-	-	-	T	151877802	C	T	151877802	2	4	240	1	0	0	0	0	0	0	0	1	9693	825	29	2		2	MLL3	7	151877802	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16930	151877802	7260861	1973	20823										
MLL3	0	genome.wustl.edu	37	chr7	151917668	151917668	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggatgtctggaggggtctGaaggacggccacgctattct	15	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	151917668	151917668	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.3652	p.Q1218*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	178	0	0	116	72	38.3	-	-	-	A	151917668	G	A	151917668	4	1	240	1	0	0	0	0	0	1	0	0	9693	1299	45	2	11231	2	MLL3	7	151917668	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39866	151917668	7220995	1974	20824										
DPP6	0	genome.wustl.edu	37	chr7	154172044	154172044	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaagataatagtctgtctCaaaagaagaaggtcactgta	10	6	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	154172044	154172044	C	G	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.379	p.Q127E	0.994	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	56	0	0	55	11	16.67	-	-	-	G	154172044	C	G	154172044	3	3	240	1	0	0	0	0	1	0	0	0	4765	827	29	2	505	2	DPP6	7	154172044	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2254376	154172044	4966619	1975	20825										
DPP6	0	genome.wustl.edu	37	chr7	154659713	154659713	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctctttcagaaatgtttGacctagaaacaaatgaacat	5	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	154659713	154659713	G	C	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.1723	p.D575H	0.992	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	60	0	0	48	13	21.31	-	-	-	C	154659713	G	C	154659713	3	2	240	1	0	0	0	0	1	0	0	0	4765	1290	45	2	1909	2	DPP6	7	154659713	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	487669	154659713	4478950	1976	20826										
RBM33	0	genome.wustl.edu	37	chr7	155471326	155471326	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcggatttgtcagatgaaGagctaaatgatgatcttttg	11	4	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	155471326	155471326	G	C	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.196	p.E66Q	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	118	0	0	71	15	17.44	-	-	-	C	155471326	G	C	155471326	3	2	240	1	0	0	0	0	1	0	0	0	13213	943	33	2	210	2	RBM33	7	155471326	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	811613	155471326	3667337	1977	20827										
NCAPG2	0	genome.wustl.edu	37	chr7	158447914	158447914	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaccaaaagccagtgtcttCcaacatggacaaatacacct	5	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	158447914	158447914	C	T	SNP	NCAPG2	ENST00000441982	human	ensembl	69_37n	-1	known	nonsense	c.1947	p.W649*	1.000	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCAPG2	HGNC	ENSG00000146918	37	0	0	27	7	20.59	-	-	-	T	158447914	C	T	158447914	4	4	240	1	0	0	0	0	0	1	0	0	10280	864	30	2	921	2	NCAPG2	7	158447914	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2976588	158447914	690749	1978	20828										
NCAPG2	0	genome.wustl.edu	37	chr7	158486140	158486140	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcttctttctgtttccttGataattcatctagtaattca	3	8	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	158486140	158486140	G	C	SNP	NCAPG2	ENST00000409339	human	ensembl	69_37n	-1	known	nonsense	c.128	p.S43*	1.000	superfamily_ARM-type_fold	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918	149	0	0	151	32	17.39	-	-	-	C	158486140	G	C	158486140	4	2	240	1	0	0	0	0	0	1	0	0	10280	1294	45	2	3407	2	NCAPG2	7	158486140	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38226	158486140	652523	1979	20829										
VIPR2	0	genome.wustl.edu	37	chr7	158935171	158935171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttgagacctcagaagctCtgcacattttgtttcttcct	7	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	158935171	158935171	C	T	SNP	VIPR2	ENST00000262178	human	ensembl	69_37n	-1	known	missense	c.118	p.E40K	0.512	pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt_2	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR2	HGNC	ENSG00000106018	192	0	0	142	51	26.42	-	-	-	T	158935171	C	T	158935171	3	4	240	1	0	0	0	0	1	0	0	0	17267	922	32	2	1246	2	VIPR2	7	158935171	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	449031	158935171	203492	1980	20830										
VIPR2	0	genome.wustl.edu	37	chr7	158935192	158935192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcacattttgtttcttcctCctgtatttccagatgaaatc	5	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	7	158935192	158935192	C	T	SNP	VIPR2	ENST00000262178	human	ensembl	69_37n	-1	known	missense	c.97	p.E33K	0.984	prints_GPCR_2_VIP_rcpt_2	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR2	HGNC	ENSG00000106018	187	0	0	154	33	17.65	-	-	-	T	158935192	C	T	158935192	3	4	240	1	0	0	0	0	1	0	0	0	17267	864	30	2	1267	2	VIPR2	7	158935192	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21	158935192	203471	1981	20831										
ERI1	0	genome.wustl.edu	37	chr8	8877911	8877911	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgtcaactcagcaggctCaaataccctccttttgcgaa	7	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	8877911	8877911	C	G	SNP	ERI1	ENST00000250263	human	ensembl	69_37n	1	known	silent	c.744	p.L248	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_DNA-bd,superfamily_RNaseH-like_dom,smart_SAP_DNA-bd,smart_Exonuclease,pfscan_SAP_DNA-bd	-	no_errors	ERI1	HGNC	ENSG00000104626	149	0	0	29	25	46.3	-	-	-	G	8877911	C	G	8877911	2	3	240	1	0	0	0	0	0	0	0	1	5264	813	29	2		2	ERI1	8	8877911	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		8877911	137486111	1982	20832										
PSD3	0	genome.wustl.edu	37	chr8	18413859	18413859	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatgtgacttcagttgctCctcctgcaggaaatcatgat	8	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	18413859	18413859	C	G	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	missense	c.2794	p.E932Q	1.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	100	0	0	30	26	46.43	-	-	-	G	18413859	C	G	18413859	3	3	240	1	0	0	0	0	1	0	0	0	12728	864	30	2	363	2	PSD3	8	18413859	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9535948	18413859	127950163	1983	20833										
PSD3	0	genome.wustl.edu	37	chr8	18729344	18729344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaccagctgatgagatgaGatggcgtggcactttggaag	14	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	18729344	18729344	G	C	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	missense	c.1030	p.L344V	0.003	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	122	0	0	58	11	15.94	-	-	-	C	18729344	G	C	18729344	3	2	240	1	0	0	0	0	1	0	0	0	12728	942	33	2	2205	2	PSD3	8	18729344	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	315485	18729344	127634678	1984	20834										
PIWIL2	0	genome.wustl.edu	37	chr8	22141726	22141726	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacctcagtctttgggactGaacctcgtcaaaatacagtg	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	22141726	22141726	G	A	SNP	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	silent	c.684	p.L228	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	82	0	0	13	32	71.11	-	-	-	A	22141726	G	A	22141726	2	1	240	1	0	0	0	0	0	0	0	1	12032	1277	45	2		2	PIWIL2	8	22141726	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3412382	22141726	124222296	1985	20835										
EPHX2	0	genome.wustl.edu	37	chr8	27399056	27399056	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttgcaaaagcttgggacgGaaggtgagtgccaggttcag	16	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	27399056	27399056	G	A	SNP	EPHX2	ENST00000521400	human	ensembl	69_37n	1	known	silent	c.1446	p.R482	0.923	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Epox_hydrolase-like,prints_Haloacid_DH/epoxide_hydro,prints_AB_hydrolase_1,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	EPHX2	HGNC	ENSG00000120915	114	0	0	33	28	45.9	-	-	-	A	27399056	G	A	27399056	2	1	240	1	0	0	0	0	0	0	0	1	5217	1161	41	2		2	EPHX2	8	27399056	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5257330	27399056	118964966	1986	20836										
SCARA3	0	genome.wustl.edu	37	chr8	27514305	27514305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttttccctacagttttcaGaaaagtggactctctctccg	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	27514305	27514305	G	A	SNP	SCARA3	ENST00000301904	human	ensembl	69_37n	1	known	missense	c.233	p.R78K	1.000	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077	118	0	0	97	19	16.38	-	-	-	A	27514305	G	A	27514305	3	1	240	1	0	0	0	0	1	0	0	0	13966	942	33	2	247	2	SCARA3	8	27514305	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	115249	27514305	118849717	1987	20837										
HMBOX1	0	genome.wustl.edu	37	chr8	28821327	28821327	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttctatctttgttctacaGaatggtagataacgcagatc	7	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	28821327	28821327	G	C	SNP	HMBOX1	ENST00000444075	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	HMBOX1	HGNC	ENSG00000147421	119	0	0	58	47	44.76	-	-	-	C	28821327	G	C	28821327	5	2	240	1	0	0	0	0	0	0	1	0	7269	956	33	2		2	HMBOX1	8	28821327	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1307022	28821327	117542695	1988	20838										
KIF13B	0	genome.wustl.edu	37	chr8	29025023	29025023	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctgcataccgcagagttGagagggtttcatcatagtta	11	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	29025023	29025023	G	C	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	nonsense	c.1025	p.S342*	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	59	0	0	20	18	47.37	-	-	-	C	29025023	G	C	29025023	4	2	240	1	0	0	0	0	0	1	0	0	8327	1294	45	2	4575	2	KIF13B	8	29025023	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	203696	29025023	117338999	1989	20839										
TEX15	0	genome.wustl.edu	37	chr8	30701561	30701561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatcaggatttgttcaactGaacattcttgctttctttca	5	8	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	30701561	30701561	G	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.4973	p.S1658L	0.996	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	76	0	0	16	22	57.89	-	-	-	A	30701561	G	A	30701561	3	1	240	1	0	0	0	0	1	0	0	0	15874	1294	45	2	3412	2	TEX15	8	30701561	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1676538	30701561	115662461	1990	20840										
PURG	0	genome.wustl.edu	37	chr8	30889438	30889438	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctcacctcacttaccttCaggaaaattccatatttatt	4	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	30889438	30889438	C	T	SNP	PURG	ENST00000475541	human	ensembl	69_37n	-1	known	silent	c.861	p.L287	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURG	HGNC	ENSG00000172733	61	0	0	23	18	43.9	-	-	-	T	30889438	C	T	30889438	2	4	240	1	0	0	0	0	0	0	0	1	12912	813	29	2		2	PURG	8	30889438	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	187877	30889438	115474584	1991	20841										
PURG	0	genome.wustl.edu	37	chr8	30889906	30889906	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctcttgccggtggcctttCaggcccaggtgggcatagtg	15	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	30889906	30889906	C	T	SNP	PURG	ENST00000475541	human	ensembl	69_37n	-1	known	silent	c.393	p.L131	1.000	pfam_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURG	HGNC	ENSG00000172733	21	0	0	5	5	50	-	-	-	T	30889906	C	T	30889906	2	4	240	1	0	0	0	0	0	0	0	1	12912	813	29	2		2	PURG	8	30889906	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	468	30889906	115474116	1992	20842										
WRN	0	genome.wustl.edu	37	chr8	30933780	30933780	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcatcttcctcatgctttCagtaaattggaaaacccacg	6	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	30933780	30933780	C	T	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	silent	c.816	p.F272	0.000	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	66	0	0	21	18	46.15	-	-	-	T	30933780	C	T	30933780	2	4	240	1	0	0	0	0	0	0	0	1	17499	825	29	2		2	WRN	8	30933780	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43874	30933780	115430242	1993	20843										
WHSC1L1	0	genome.wustl.edu	37	chr8	38173007	38173007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatccatggactgcacatcaGaaacgtctgcatctgcagta	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	38173007	38173007	G	A	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	missense	c.2042	p.S681F	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	100	0	0	27	27	50	-	-	-	A	38173007	G	A	38173007	3	1	240	1	0	0	0	0	1	0	0	0	17460	942	33	2	2327	2	WHSC1L1	8	38173007	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7239227	38173007	108191015	1994	20844										
HTRA4	0	genome.wustl.edu	37	chr8	38840029	38840029	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttccaggaaaggcgttttCaaataagaaatatctgggtc	9	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	38840029	38840029	C	T	SNP	HTRA4	ENST00000302495	human	ensembl	69_37n	1	known	missense	c.1127	p.S376L	0.663	NULL	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495	171	0	0	37	31	45.59	-	-	-	T	38840029	C	T	38840029	3	4	240	1	0	0	0	0	1	0	0	0	7510	838	29	2	1153	2	HTRA4	8	38840029	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	667022	38840029	107523993	1995	20845										
SFRP1	0	genome.wustl.edu	37	chr8	41122839	41122839	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatgaggaagtggtggctGaggttgtccagctggtggca	18	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	41122839	41122839	G	A	SNP	SFRP1	ENST00000220772	human	ensembl	69_37n	-1	known	silent	c.792	p.L264	0.969	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332	149	0	0	35	26	42.62	-	-	-	A	41122839	G	A	41122839	2	1	240	1	0	0	0	0	0	0	0	1	14249	1277	45	2		2	SFRP1	8	41122839	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2282810	41122839	105241183	1996	20846										
PLAT	0	genome.wustl.edu	37	chr8	42038190	42038190	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggctggctgtactgtctCaggccgcaggtggctgggga	18	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	42038190	42038190	C	G	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	silent	c.903	p.L301	0.994	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	40	0	0	11	5	31.25	-	-	-	G	42038190	C	G	42038190	2	3	240	1	0	0	0	0	0	0	0	1	12095	813	29	2		2	PLAT	8	42038190	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	915351	42038190	104325832	1997	20847										
IKBKB	0	genome.wustl.edu	37	chr8	42183569	42183569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctgggcagctgatgtctCagccctccacggcctccaac	10	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	42183569	42183569	C	G	SNP	IKBKB	ENST00000520810	human	ensembl	69_37n	1	known	missense	c.2068	p.Q690E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	59	0	0	34	24	41.38	-	-	-	G	42183569	C	G	42183569	3	3	240	1	0	0	0	0	1	0	0	0	7665	827	29	2	2142	2	IKBKB	8	42183569	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	145379	42183569	104180453	1998	20848										
POLB	0	genome.wustl.edu	37	chr8	42227455	42227455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatgagggctcatgccctaGaaaagggtttcacaatcaat	9	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	42227455	42227455	G	A	SNP	POLB	ENST00000265421	human	ensembl	69_37n	1	known	missense	c.862	p.E288K	1.000	smart_DNA-dir_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,smart_Hlx-hairpin-Hlx_DNA-bd_motif,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLB	HGNC	ENSG00000070501	87	0	0	44	22	33.33	-	-	-	A	42227455	G	A	42227455	3	1	240	1	0	0	0	0	1	0	0	0	12263	943	33	2	912	2	POLB	8	42227455	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	43886	42227455	104136567	1999	20849										
DKK4	0	genome.wustl.edu	37	chr8	42231715	42231715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccagggccacagtcgcaaCgctggaagatttctggagct	13	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	42231715	42231715	C	T	SNP	DKK4	ENST00000220812	human	ensembl	69_37n	-1	known	missense	c.578	p.R193H	1.000	pfam_Prokineticin_domain	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371	59	0	0	25	20	44.44	-	-	-	T	42231715	C	T	42231715	3	4	240	1	0	0	0	0	1	0	0	0	4583	536	19	1	100	1	DKK4	8	42231715	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4260	42231715	104132307	2000	20850										
HGSNAT	0	genome.wustl.edu	37	chr8	43033374	43033374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcccaattattgccttggtCcatgtaagtactttttccct	5	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	43033374	43033374	C	A	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1093	p.P365T	1.000	pfam_DUF1624	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	245	0	0	105	55	34.38	-	-	-	A	43033374	C	A	43033374	3	1	240	1	0	0	0	0	1	0	0	0	7139	855	30	2	1047	2	HGSNAT	8	43033374	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	801659	43033374	103330648	2001	20851										
PRKDC	0	genome.wustl.edu	37	chr8	48771175	48771175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaatttcatccaagaagGaagatctcttggcactgaat	10	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	48771175	48771175	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.6364	p.P2122S	1.000	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	75	0	0	59	9	13.24	-	-	-	A	48771175	G	A	48771175	3	1	240	1	0	0	0	0	1	0	0	0	12602	1174	41	2	6175	2	PRKDC	8	48771175	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5737801	48771175	97592847	2002	20852										
PRKDC	0	genome.wustl.edu	37	chr8	48792181	48792181	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccagactgcctccagtGaggctggtgaagaatggaag	13	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	48792181	48792181	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	silent	c.5103	p.L1701	0.008	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	37	0	0	35	7	16.67	-	-	-	A	48792181	G	A	48792181	2	1	240	1	0	0	0	0	0	0	0	1	12602	1277	45	2		2	PRKDC	8	48792181	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21006	48792181	97571841	2003	20853										
PRKDC	0	genome.wustl.edu	37	chr8	48811100	48811100	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgatgcggcataggtgatCaatggcatcacaacactgtt	10	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	48811100	48811100	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.3394	p.D1132N	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	89	0	0	73	38	34.23	-	-	-	T	48811100	C	T	48811100	3	4	240	1	0	0	0	0	1	0	0	0	12602	826	29	2	9223	2	PRKDC	8	48811100	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18919	48811100	97552922	2004	20854										
EFCAB1	0	genome.wustl.edu	37	chr8	49647713	49647713	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtttcttgcggttcatgtCtggcgctcagagaatcgggc	13	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	49647713	49647713	C	G	SNP	EFCAB1	ENST00000521002	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	EFCAB1	HGNC	ENSG00000034239	126	0	0	85	27	24.11	-	-	-	G	49647713	C	G	49647713	1	3	240	0	1	0	0	0	0	0	0	0	4968	928	32	2		2	EFCAB1	8	49647713	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	836613	49647713	96716309	2005	20855										
PXDNL	0	genome.wustl.edu	37	chr8	52284470	52284470	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacactcgcaggtccaccttCgggatctcgctgcagttcag	10	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	52284470	52284470	C	A	SNP	PXDNL	ENST00000522933	human	ensembl	69_37n	-1	novel	missense	c.1085	p.R362L	0.000	superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_VWF_C,superfamily_Haem_peroxidase,smart_VWF_C,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PXDNL	HGNC	ENSG00000147485	67	0	0	32	55	63.22	-	-	-	A	52284470	C	A	52284470	3	1	240	1	0	0	0	0	1	0	0	0	12931	871	31	3	547	3	PXDNL	8	52284470	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2636757	52284470	94079552	2006	20856										
ST18	0	genome.wustl.edu	37	chr8	53030921	53030921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctgaagtttcatcatatCtgcttcaattttaaggttgg	9	6	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	53030921	53030921	C	G	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2836	p.D946H	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	346	0	0	146	202	58.05	-	-	-	G	53030921	C	G	53030921	3	3	240	1	0	0	0	0	1	0	0	0	15303	913	32	2	319	2	ST18	8	53030921	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	746451	53030921	93333101	2007	20857										
ST18	0	genome.wustl.edu	37	chr8	53030994	53030994	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctaatttcttcatcactCtctattcctgtaaagagtaa	4	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	53030994	53030994	C	G	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2763	p.E921D	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	242	0	0	206	33	13.81	-	-	-	G	53030994	C	G	53030994	3	3	240	1	0	0	0	0	1	0	0	0	15303	912	32	2	392	2	ST18	8	53030994	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	73	53030994	93333028	2008	20858										
ST18	0	genome.wustl.edu	37	chr8	53085093	53085093	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccttcctactggagttttCttgtgcagttgaaagaagac	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	53085093	53085093	C	G	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.328	p.E110Q	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	36	0	0	45	6	11.76	-	-	-	G	53085093	C	G	53085093	3	3	240	1	0	0	0	0	1	0	0	0	15303	922	32	2	2883	2	ST18	8	53085093	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54099	53085093	93278929	2009	20859										
TCEA1	0	genome.wustl.edu	37	chr8	54906232	54906232	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctatactgtgaagtacctttCttctcttgcctcagggctgt	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	54906232	54906232	C	G	SNP	TCEA1	ENST00000521604	human	ensembl	69_37n	-1	known	missense	c.316	p.E106Q	1.000	pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735	215	0	0	202	45	18.22	-	-	-	G	54906232	C	G	54906232	3	3	240	1	0	0	0	0	1	0	0	0	15762	922	32	2	617	2	TCEA1	8	54906232	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1821139	54906232	91457790	2010	20860										
RP1	0	genome.wustl.edu	37	chr8	55538337	55538337	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttctgaggctccagcttCagaagcatcctctactgtca	7	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	55538337	55538337	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.1895	p.S632L	0.021	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	36	0	0	34	9	20.93	-	-	-	T	55538337	C	T	55538337	3	4	240	1	0	0	0	0	1	0	0	0	13618	838	29	2	1905	2	RP1	8	55538337	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	632105	55538337	90825685	2011	20861										
TGS1	0	genome.wustl.edu	37	chr8	56698332	56698332	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctgtggtactgcagaatCacatgacagcaaaggcatag	10	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	56698332	56698332	C	T	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.221	p.S74L	0.008	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	100	1	0.99	76	20	20.83	-	-	-	T	56698332	C	T	56698332	3	4	240	1	0	0	0	0	1	0	0	0	15932	838	29	2	231	2	TGS1	8	56698332	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1159995	56698332	89665690	2012	20862										
TGS1	0	genome.wustl.edu	37	chr8	56699571	56699571	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgtaatggaggaaccaatGaggaaagcaactcatcgggg	13	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	56699571	56699571	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.1114	p.E372K	0.234	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	41	0	0	38	10	20.83	-	-	-	A	56699571	G	A	56699571	3	1	240	1	0	0	0	0	1	0	0	0	15932	1291	45	2	1128	2	TGS1	8	56699571	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1239	56699571	89664451	2013	20863										
LYN	0	genome.wustl.edu	37	chr8	56854475	56854475	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgacgatggagtagatttGaagactcaaccagtacgtaa	11	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	56854475	56854475	G	C	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.57	p.L19F	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	62	0	0	49	10	16.95	-	-	-	C	56854475	G	C	56854475	3	2	240	1	0	0	0	0	1	0	0	0	9174	1281	45	2	59	2	LYN	8	56854475	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	154904	56854475	89509547	2014	20864										
SDR16C5	0	genome.wustl.edu	37	chr8	57228644	57228644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggcgtgcactcttgtggctCcagcttcccgagccatctta	10	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	57228644	57228644	C	T	SNP	SDR16C5	ENST00000303749	human	ensembl	69_37n	-1	known	missense	c.263	p.G88E	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786	43	0	0	21	41	66.13	-	-	-	T	57228644	C	T	57228644	3	4	240	1	0	0	0	0	1	0	0	0	14059	855	30	2	690	2	SDR16C5	8	57228644	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	374169	57228644	89135378	2015	20865										
UBXN2B	0	genome.wustl.edu	37	chr8	59343144	59343144	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttcaactgggaaaattgtGaatgaacttttcaaagaggc	9	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	59343144	59343144	G	A	SNP	UBXN2B	ENST00000521796	human	ensembl	69_37n	1	putative	missense	c.91	p.E31K	1.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBXN2B	HGNC	ENSG00000215114	75	0	0	56	17	23.29	-	-	-	A	59343144	G	A	59343144	3	1	240	1	0	0	0	0	1	0	0	0	17012	1277	45	2	265	2	UBXN2B	8	59343144	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2114500	59343144	87020878	2016	20866										
UBXN2B	0	genome.wustl.edu	37	chr8	59358548	59358548	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcagttgttcttattgatGattcagtgccaacaacaaaa	7	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	59358548	59358548	G	A	SNP	UBXN2B	ENST00000399598	human	ensembl	69_37n	1	known	missense	c.754	p.D252N	1.000	smart_UBX,pfscan_UBX	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2B	HGNC	ENSG00000215114	165	0	0	151	21	12.21	-	-	-	A	59358548	G	A	59358548	3	1	240	1	0	0	0	0	1	0	0	0	17012	1290	45	2	780	2	UBXN2B	8	59358548	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15404	59358548	87005474	2017	20867										
CHD7	0	genome.wustl.edu	37	chr8	61765813	61765813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagccgaaggcaaagtggagGagcctgaaaacccagctgcc	13	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	61765813	61765813	G	A	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.6529	p.E2177K	0.997	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	33	0	0	52	7	11.86	-	-	-	A	61765813	G	A	61765813	3	1	240	1	0	0	0	0	1	0	0	0	3359	1175	41	2	6647	2	CHD7	8	61765813	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2407265	61765813	84598209	2018	20868										
TTPA	0	genome.wustl.edu	37	chr8	63973898	63973898	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacaaatgtcctccatggaGaattcttcaccaccatattc	5	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	63973898	63973898	G	C	SNP	TTPA	ENST00000260116	human	ensembl	69_37n	-1	known	missense	c.750	p.F250L	0.276	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561	100	0	0	83	26	23.85	-	-	-	C	63973898	G	C	63973898	3	2	240	1	0	0	0	0	1	0	0	0	16833	933	33	2	90	2	TTPA	8	63973898	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2208085	63973898	82390124	2019	20869										
YTHDF3	0	genome.wustl.edu	37	chr8	64099494	64099494	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagcctcagccattaattCaaccaccaccattggtgcaa	6	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	64099494	64099494	C	T	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	132	0	0	180	31	14.62	-	-	-	T	64099494	C	T	64099494	1	4	240	0	1	0	0	0	0	0	0	0	17597	825	29	2		2	YTHDF3	8	64099494	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	125596	64099494	82264528	2020	20870										
BHLHE22	0	genome.wustl.edu	37	chr8	65494151	65494151	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggacgagctgcgcgcggtGatcccctacgcgcacagccc	13	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	65494151	65494151	G	A	SNP	BHLHE22	ENST00000321870	human	ensembl	69_37n	1	known	silent	c.804	p.V268	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	BHLHE22	HGNC	ENSG00000180828	16	0	0	12	11	47.83	-	-	-	A	65494151	G	A	65494151	2	1	240	1	0	0	0	0	0	0	0	1	1426	1277	45	2		2	BHLHE22	8	65494151	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1394657	65494151	80869871	2021	20871										
TRIM55	0	genome.wustl.edu	37	chr8	67039518	67039518	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggagatgagcgcatctctGaattacaaatctttttccaa	8	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	67039518	67039518	G	A	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	silent	c.15	p.L5	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	79	0	0	88	19	17.76	-	-	-	A	67039518	G	A	67039518	2	1	240	1	0	0	0	0	0	0	0	1	16625	1277	45	2		2	TRIM55	8	67039518	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1545367	67039518	79324504	2022	20872										
CSPP1	0	genome.wustl.edu	37	chr8	68007537	68007537	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taattgaacagcccaagagtCagagaaataaaaaacctatt	6	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	68007537	68007537	C	A	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.520	p.Q174K	0.926	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	35	0	0	22	30	57.69	-	-	-	A	68007537	C	A	68007537	3	1	240	1	0	0	0	0	1	0	0	0	3994	827	29	2	655	2	CSPP1	8	68007537	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	968019	68007537	78356485	2023	20873										
CSPP1	0	genome.wustl.edu	37	chr8	68026075	68026075	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcagggttgcagcgtctgGagcacaagaccctgagaaat	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	68026075	68026075	G	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.1250	p.G417A	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	51	0	0	32	8	20	-	-	-	C	68026075	G	C	68026075	3	2	240	1	0	0	0	0	1	0	0	0	3994	1174	41	2	1401	2	CSPP1	8	68026075	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18538	68026075	78337947	2024	20874										
CSPP1	0	genome.wustl.edu	37	chr8	68049834	68049834	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggatgcaaaaggaaatctGataagtacgttatttctact	9	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	68049834	68049834	G	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.1956	p.L652	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	88	0	0	94	24	20.34	-	-	-	C	68049834	G	C	68049834	2	2	240	1	0	0	0	0	0	0	0	1	3994	1277	45	2		2	CSPP1	8	68049834	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23759	68049834	78314188	2025	20875										
ARFGEF1	0	genome.wustl.edu	37	chr8	68150640	68150640	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccagtaagagatccttctCtgcctcgcactgttccagaa	7	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	68150640	68150640	C	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.3227	p.R1076T	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	99	0	0	78	25	24.27	-	-	-	G	68150640	C	G	68150640	3	3	240	1	0	0	0	0	1	0	0	0	854	913	32	2	2394	2	ARFGEF1	8	68150640	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100806	68150640	78213382	2026	20876										
PREX2	0	genome.wustl.edu	37	chr8	69104691	69104691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctggggttggactgctgtCagtttcctcggagctgtgca	14	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	69104691	69104691	C	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.4535	p.S1512L	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	41	0	0	34	19	35.85	-	-	-	T	69104691	C	T	69104691	3	4	240	1	0	0	0	0	1	0	0	0	12558	838	29	2	4910	2	PREX2	8	69104691	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	954051	69104691	77259331	2027	20877										
SULF1	0	genome.wustl.edu	37	chr8	70533349	70533349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtgacctgctcacagtccGgcagagcacgcggaacctct	11	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	70533349	70533349	G	A	SNP	SULF1	ENST00000260128	human	ensembl	69_37n	1	known	missense	c.1457	p.R486Q	0.060	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	62	0	0	35	47	57.32	-	-	-	A	70533349	G	A	70533349	3	1	240	1	0	0	0	0	1	0	0	0	15461	1116	39	1	1495	1	SULF1	8	70533349	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1428658	70533349	75830673	2028	20878										
NCOA2	0	genome.wustl.edu	37	chr8	71039235	71039235	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgtcgaagatgctggttCaggatttccctctgtctctg	10	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	71039235	71039235	C	T	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.3729	p.L1243	0.991	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	130	1	0.76	71	85	54.49	-	-	-	T	71039235	C	T	71039235	2	4	240	1	0	0	0	0	0	0	0	1	10301	813	29	2		2	NCOA2	8	71039235	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	505886	71039235	75324787	2029	20879										
NCOA2	0	genome.wustl.edu	37	chr8	71053514	71053514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggttccgaatcatacctCcttggactggccggttcatg	11	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	71053514	71053514	C	T	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	missense	c.2933	p.G978E	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	103	0	0	95	22	18.8	-	-	-	T	71053514	C	T	71053514	3	4	240	1	0	0	0	0	1	0	0	0	10301	855	30	2	1501	2	NCOA2	8	71053514	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14279	71053514	75310508	2030	20880										
NCOA2	0	genome.wustl.edu	37	chr8	71060584	71060584	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttcagctgtgagttgcatGaggtcattgatgatggcttg	13	5	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	71060584	71060584	G	T	SNP	NCOA2	ENST00000518363	human	ensembl	69_37n	-1	putative	nonsense	c.38	p.S13*	1.000	NULL	pfam_DUF1518,pfam_Nuc_rcpt_coact_Ncoa-typ,superfamily_Nuc_rcpt_coact	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCOA2	HGNC	ENSG00000140396	142	1	0.7	136	26	16.05	-	-	-	T	71060584	G	T	71060584	4	4	240	1	0	0	0	0	0	1	0	0	10301	1277	45	2	1913	2	NCOA2	8	71060584	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7070	71060584	75303438	2031	20881										
TRAM1	0	genome.wustl.edu	37	chr8	71495481	71495481	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaaagcagaatgttccctCcaccttcgaagctgaaaatt	7	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	71495481	71495481	C	T	SNP	TRAM1	ENST00000262213	human	ensembl	69_37n	-1	known	nonsense	c.969	p.W323*	1.000	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1	HGNC	ENSG00000067167	171	0	0	76	102	56.98	-	-	-	T	71495481	C	T	71495481	4	4	240	1	0	0	0	0	0	1	0	0	16547	856	30	2	163	2	TRAM1	8	71495481	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	434897	71495481	74868541	2032	20882										
TRAM1	0	genome.wustl.edu	37	chr8	71510247	71510247	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcattcgcctgttaattttCtaaaaataaaaacagccatt	4	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	71510247	71510247	C	T	SNP	TRAM1	ENST00000262213	human	ensembl	69_37n	-1	known	splice_site	c.310-1	e4-1	1.000	-	-	-	no_errors	TRAM1	HGNC	ENSG00000067167	95	0	0	94	23	19.66	-	-	-	T	71510247	C	T	71510247	5	4	240	1	0	0	0	0	0	0	1	0	16547	927	32	2	847	2	TRAM1	8	71510247	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14766	71510247	74853775	2033	20883										
TRPA1	0	genome.wustl.edu	37	chr8	72958768	72958768	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgagggctgtaagcggttCatatataacatcctgtgtag	12	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	72958768	72958768	C	T	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.2041	p.E681K	0.987	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	231	0	0	174	45	20.55	-	-	-	T	72958768	C	T	72958768	3	4	240	1	0	0	0	0	1	0	0	0	16673	835	29	2	1362	2	TRPA1	8	72958768	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1448521	72958768	73405254	2034	20884										
ZFHX4	0	genome.wustl.edu	37	chr8	77765158	77765158	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatttctccatcttctccaGaaacgccgcccccgccacct	4	20	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	77765158	77765158	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.6001	p.E2001K	1.000	superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	44	0	0	39	9	18.75	-	-	-	A	77765158	G	A	77765158	3	1	240	1	0	0	0	0	1	0	0	0	17731	943	33	2	6035	2	ZFHX4	8	77765158	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4806390	77765158	68598864	2035	20885										
ZFHX4	0	genome.wustl.edu	37	chr8	77767177	77767177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggtgggtccagcacagtctCataaacggtgtccgttttgc	12	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	77767177	77767177	C	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.8020	p.H2674D	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	38	0	0	25	7	21.88	-	-	-	G	77767177	C	G	77767177	3	3	240	1	0	0	0	0	1	0	0	0	17731	826	29	2	8054	2	ZFHX4	8	77767177	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2019	77767177	68596845	2036	20886										
PKIA	0	genome.wustl.edu	37	chr8	79510626	79510626	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatatttggtagcaatgactGatgtggaaactacatatgca	10	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	79510626	79510626	G	A	SNP	PKIA	ENST00000352966	human	ensembl	69_37n	1	known	missense	c.7	p.D3N	1.000	pfam_cAMP_dep_PKI,pirsf_cAMP_dep_PKI	pfam_cAMP_dep_PKI,pirsf_cAMP_dep_PKI	-	no_errors	PKIA	HGNC	ENSG00000171033	89	0	0	99	23	18.85	-	-	-	A	79510626	G	A	79510626	3	1	240	1	0	0	0	0	1	0	0	0	12047	1290	45	2	9	2	PKIA	8	79510626	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1743449	79510626	66853396	2037	20887										
HEY1	0	genome.wustl.edu	37	chr8	80677501	80677501	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcgtgggtgctgaagggctCagtgcattgggagacagtaa	17	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	80677501	80677501	C	T	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	silent	c.849	p.L283	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	68	0	0	79	16	16.84	-	-	-	T	80677501	C	T	80677501	2	4	240	1	0	0	0	0	0	0	0	1	7129	813	29	2		2	HEY1	8	80677501	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1166875	80677501	65686521	2038	20888										
IMPA1	0	genome.wustl.edu	37	chr8	82598035	82598035	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataaacacctgaactgtttCctgctgtttctgtcctggtc	7	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	82598035	82598035	C	G	SNP	IMPA1	ENST00000449740	human	ensembl	69_37n	-1	known	missense	c.116	p.G39A	0.000	NULL	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	-	no_errors	IMPA1	HGNC	ENSG00000133731	86	0	0	105	22	17.32	-	-	-	G	82598035	C	G	82598035	3	3	240	1	0	0	0	0	1	0	0	0	7776	855	30	2	930	2	IMPA1	8	82598035	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1920534	82598035	63765987	2039	20889										
ZFAND1	0	genome.wustl.edu	37	chr8	82627114	82627114	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtttttcacactcatgatCtgactgatgacggtgtctat	8	9	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	82627114	82627114	C	G	SNP	ZFAND1	ENST00000220669	human	ensembl	69_37n	-1	known	missense	c.283	p.D95H	1.000	pfam_Znf_AN1,smart_Znf_AN1	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	-	no_errors	ZFAND1	HGNC	ENSG00000104231	94	0	0	111	31	21.83	-	-	-	G	82627114	C	G	82627114	3	3	240	1	0	0	0	0	1	0	0	0	17722	913	32	2	587	2	ZFAND1	8	82627114	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29079	82627114	63736908	2040	20890										
LRRCC1	0	genome.wustl.edu	37	chr8	86027664	86027664	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgatgagttagttcccttgGaacagtttgcaagtacacca	9	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	86027664	86027664	G	T	SNP	LRRCC1	ENST00000360375	human	ensembl	69_37n	1	known	nonsense	c.775	p.E259*	0.138	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	81	0	0	63	24	27.59	-	-	-	T	86027664	G	T	86027664	4	4	240	1	0	0	0	0	0	1	0	0	9092	1175	41	2	797	2	LRRCC1	8	86027664	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3400550	86027664	60336358	2041	20891										
LRRCC1	0	genome.wustl.edu	37	chr8	86050409	86050409	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttggaaaggcacaatgaaaGaaaagaaaaactaaaacaac	8	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	86050409	86050409	G	T	SNP	LRRCC1	ENST00000360375	human	ensembl	69_37n	1	known	missense	c.2633	p.R878I	1.000	superfamily_Prefoldin	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	62	0	0	46	14	23.33	-	-	-	T	86050409	G	T	86050409	3	4	240	1	0	0	0	0	1	0	0	0	9092	942	33	2	2695	2	LRRCC1	8	86050409	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22745	86050409	60313613	2042	20892										
WWP1	0	genome.wustl.edu	37	chr8	87443920	87443920	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtaaggtactttgttgatCataacacaagaacaacaaca	7	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	87443920	87443920	C	T	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	missense	c.1549	p.H517Y	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	WWP1	HGNC	ENSG00000123124	74	0	0	76	13	14.61	-	-	-	T	87443920	C	T	87443920	3	4	240	1	0	0	0	0	1	0	0	0	17512	826	29	2	1595	2	WWP1	8	87443920	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1393511	87443920	58920102	2043	20893										
CNGB3	0	genome.wustl.edu	37	chr8	87679184	87679184	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctcttacaaactggagtCtgggctggataaatagcata	9	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	87679184	87679184	C	G	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.821	p.R274T	1.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	86	0	0	90	16	15.09	-	-	-	G	87679184	C	G	87679184	3	3	240	1	0	0	0	0	1	0	0	0	3631	913	32	2	1660	2	CNGB3	8	87679184	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	235264	87679184	58684838	2044	20894										
OSGIN2	0	genome.wustl.edu	37	chr8	90937001	90937001	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcatgttcccttctgcctCtttgctgagaatgtagcgct	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	90937001	90937001	C	G	SNP	OSGIN2	ENST00000451899	human	ensembl	69_37n	1	known	silent	c.891	p.L297	0.997	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823	77	0	0	71	24	25.26	-	-	-	G	90937001	C	G	90937001	2	3	240	1	0	0	0	0	0	0	0	1	11363	900	32	2		2	OSGIN2	8	90937001	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3257817	90937001	55427021	2045	20895										
DECR1	0	genome.wustl.edu	37	chr8	91029411	91029411	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagctttgcaatctaaattCttttcacctcttcaaaaagc	4	10	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	91029411	91029411	C	G	SNP	DECR1	ENST00000220764	human	ensembl	69_37n	1	known	missense	c.129	p.F43L	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325	113	0	0	58	78	57.35	-	-	-	G	91029411	C	G	91029411	3	3	240	1	0	0	0	0	1	0	0	0	4413	912	32	2	135	2	DECR1	8	91029411	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92410	91029411	55334611	2046	20896										
RUNX1T1	0	genome.wustl.edu	37	chr8	93017505	93017505	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgcagtggaggagctcacgCtgcagcaggggcaagttggc	18	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	93017505	93017505	C	G	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	missense	c.612	p.Q204H	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	95	0	0	62	84	57.53	-	-	-	G	93017505	C	G	93017505	3	3	240	1	0	0	0	0	1	0	0	0	13833	796	28	4	1263	4	RUNX1T1	8	93017505	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1988094	93017505	53346517	2047	20897										
TMEM67	0	genome.wustl.edu	37	chr8	94792877	94792877	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatatgtgtgtgatgaacatGaattcttacgactttgccac	8	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	94792877	94792877	G	A	SNP	TMEM67	ENST00000453321	human	ensembl	69_37n	1	known	missense	c.771	p.M257I	1.000	pfam_Meckelin	pfam_Meckelin,superfamily_Growth_fac_rcpt	-	no_errors	TMEM67	HGNC	ENSG00000164953	187	0	0	171	37	17.79	-	-	-	A	94792877	G	A	94792877	3	1	240	1	0	0	0	0	1	0	0	0	16291	1290	45	2	939	2	TMEM67	8	94792877	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1775372	94792877	51571145	2048	20898										
TMEM67	0	genome.wustl.edu	37	chr8	94822068	94822068	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgcttcttgaaagaattcTtggaatggaattcatggaac	10	5	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	94822068	94822068	T	A	SNP	TMEM67	ENST00000453321	human	ensembl	69_37n	1	known	missense	c.2717	p.L906H	1.000	pfam_Meckelin	pfam_Meckelin,superfamily_Growth_fac_rcpt	-	no_errors	TMEM67	HGNC	ENSG00000164953	55	0	0	57	14	19.72	-	-	-	A	94822068	T	A	94822068	3	1	240	1	0	0	0	0	1	0	0	0	16291	1609	56	5	2957	5	TMEM67	8	94822068	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	29191	94822068	51541954	2049	20899										
RAD54B	0	genome.wustl.edu	37	chr8	95419762	95419762	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacacttttgaaagggttaGagaaacatttcctggcaacc	8	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	95419762	95419762	G	C	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.686	p.S229C	0.970	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	91	0	0	44	61	58.1	-	-	-	C	95419762	G	C	95419762	3	2	240	1	0	0	0	0	1	0	0	0	13075	942	33	2	2090	2	RAD54B	8	95419762	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	597694	95419762	50944260	2050	20900										
KIAA1429	0	genome.wustl.edu	37	chr8	95504988	95504988	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatgagcgctctaattctGagtgcaaatcaaagtcacta	7	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	95504988	95504988	G	C	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	nonsense	c.4700	p.S1567*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	129	0	0	63	87	57.62	-	-	-	C	95504988	G	C	95504988	4	2	240	1	0	0	0	0	0	1	0	0	8283	1294	45	2	754	2	KIAA1429	8	95504988	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	85226	95504988	50859034	2051	20901										
KIAA1429	0	genome.wustl.edu	37	chr8	95518894	95518894	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagagaattggagagctgctCcagttcagaaatagaacctt	10	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	95518894	95518894	C	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.3931	p.E1311Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	52	0	0	63	10	13.7	-	-	-	G	95518894	C	G	95518894	3	3	240	1	0	0	0	0	1	0	0	0	8283	864	30	2	1543	2	KIAA1429	8	95518894	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13906	95518894	50845128	2052	20902										
KIAA1429	0	genome.wustl.edu	37	chr8	95522665	95522665	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgcaagtcttctacaatCaaatccaacacagttctcat	3	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	95522665	95522665	C	A	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.3606	p.L1202F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	70	0	0	85	20	19.05	-	-	-	A	95522665	C	A	95522665	3	1	240	1	0	0	0	0	1	0	0	0	8283	825	29	2	1876	2	KIAA1429	8	95522665	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3771	95522665	50841357	2053	20903										
VPS13B	0	genome.wustl.edu	37	chr8	100568847	100568847	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagactgaaaggaattctCaaaatccagcccttgagtgg	10	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	100568847	100568847	C	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.4990	p.Q1664E	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	45	0	0	41	11	21.15	-	-	-	G	100568847	C	G	100568847	3	3	240	1	0	0	0	0	1	0	0	0	17287	827	29	2	5302	2	VPS13B	8	100568847	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5046182	100568847	45795175	2054	20904										
VPS13B	0	genome.wustl.edu	37	chr8	100790966	100790966	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatatgccatctgaactaGaatacatgattgtttccttc	6	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	100790966	100790966	G	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.7561	p.E2521Q	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	64	0	0	60	15	20	-	-	-	C	100790966	G	C	100790966	3	2	240	1	0	0	0	0	1	0	0	0	17287	943	33	2	7917	2	VPS13B	8	100790966	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	222119	100790966	45573056	2055	20905										
RGS22	0	genome.wustl.edu	37	chr8	101084415	101084415	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccagaaatgctggaagtCtttcttttttgatccactta	6	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	101084415	101084415	C	G	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.383	p.R128T	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	147	0	0	159	26	14.05	-	-	-	G	101084415	C	G	101084415	3	3	240	1	0	0	0	0	1	0	0	0	13389	913	32	2	3503	2	RGS22	8	101084415	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	293449	101084415	45279607	2056	20906										
FBXO43	0	genome.wustl.edu	37	chr8	101146033	101146033	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctatatttagtctcttcaGaggcgttttaaattccgctt	6	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	101146033	101146033	G	C	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	silent	c.2124	p.L708	0.925	NULL	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	100	0	0	56	70	55.56	-	-	-	C	101146033	G	C	101146033	2	2	240	1	0	0	0	0	0	0	0	1	5798	929	33	2		2	FBXO43	8	101146033	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	61618	101146033	45217989	2057	20907										
SPAG1	0	genome.wustl.edu	37	chr8	101196269	101196269	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcacacttgtctaaaattGagacaagaatagatacagca	7	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	101196269	101196269	G	C	SNP	SPAG1	ENST00000251809	human	ensembl	69_37n	1	known	missense	c.574	p.E192Q	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450	71	0	0	36	47	56.63	-	-	-	C	101196269	G	C	101196269	3	2	240	1	0	0	0	0	1	0	0	0	15066	1291	45	2	592	2	SPAG1	8	101196269	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	50236	101196269	45167753	2058	20908										
ANKRD46	0	genome.wustl.edu	37	chr8	101542040	101542040	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgttagtctgagaagaatCatttacaaaaacatacgaca	6	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	101542040	101542040	C	T	SNP	ANKRD46	ENST00000520552	human	ensembl	69_37n	-1	known	missense	c.22	p.D8N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD46	HGNC	ENSG00000186106	28	0	0	21	31	59.62	-	-	-	T	101542040	C	T	101542040	3	4	240	1	0	0	0	0	1	0	0	0	673	826	29	2	676	2	ANKRD46	8	101542040	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	345771	101542040	44821982	2059	20909										
YWHAZ	0	genome.wustl.edu	37	chr8	101932962	101932962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcttcagcttcgtctccttGggtatccgatgtccacaact	8	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	101932962	101932962	G	C	SNP	YWHAZ	ENST00000353245	human	ensembl	69_37n	-1	known	missense	c.697	p.Q233E	1.000	pfam_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAZ	HGNC	ENSG00000164924	48	0	0	40	7	14.89	-	-	-	C	101932962	G	C	101932962	3	2	240	1	0	0	0	0	1	0	0	0	17603	1357	47	4	44	4	YWHAZ	8	101932962	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	390922	101932962	44431060	2060	20910										
KLF10	0	genome.wustl.edu	37	chr8	103664029	103664029	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaattgttctgatagttgagGatgctggctgctttcattgg	13	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	103664029	103664029	G	T	SNP	KLF10	ENST00000285407	human	ensembl	69_37n	-1	known	silent	c.531	p.I177	0.132	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090	85	0	0	83	23	21.7	-	-	-	T	103664029	G	T	103664029	2	4	240	1	0	0	0	0	0	0	0	1	8391	1164	41	2		2	KLF10	8	103664029	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1731067	103664029	42699993	2061	20911										
ATP6V1C1	0	genome.wustl.edu	37	chr8	104053071	104053071	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctagtaacaaacatgactGagttctggcttatatctgct	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	104053071	104053071	G	A	SNP	ATP6V1C1	ENST00000395862	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	1.000	NULL	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097	92	0	0	42	58	58	-	-	-	A	104053071	G	A	104053071	3	1	240	1	0	0	0	0	1	0	0	0	1184	1291	45	2	9	2	ATP6V1C1	8	104053071	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	389042	104053071	42310951	2062	20912										
ABRA	0	genome.wustl.edu	37	chr8	107773410	107773410	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtatctgtcaaagagatctCcaaaagtaacctggatcttg	8	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	107773410	107773410	C	G	SNP	ABRA	ENST00000311955	human	ensembl	69_37n	-1	known	missense	c.1001	p.G334A	1.000	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	86	0	0	108	26	19.4	-	-	-	G	107773410	C	G	107773410	3	3	240	1	0	0	0	0	1	0	0	0	100	855	30	2	148	2	ABRA	8	107773410	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3720339	107773410	38590612	2063	20913										
ANGPT1	0	genome.wustl.edu	37	chr8	108509723	108509723	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttttctggacttcggcgctGattgctgcaccctatgtgag	12	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	108509723	108509723	G	C	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.64	p.Q22E	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	100	0	0	123	30	19.61	-	-	-	C	108509723	G	C	108509723	3	2	240	1	0	0	0	0	1	0	0	0	610	1299	45	2	1468	2	ANGPT1	8	108509723	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	736313	108509723	37854299	2064	20914										
RSPO2	0	genome.wustl.edu	37	chr8	108913393	108913393	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctttttcttgttcctcttCtccttcgcctttggtgttct	5	12	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	108913393	108913393	C	G	SNP	RSPO2	ENST00000276659	human	ensembl	69_37n	-1	known	missense	c.642	p.E214D	1.000	NULL	superfamily_Growth_fac_rcpt,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO2	HGNC	ENSG00000147655	157	0	0	135	29	17.68	-	-	-	G	108913393	C	G	108913393	3	3	240	1	0	0	0	0	1	0	0	0	13796	912	32	2	93	2	RSPO2	8	108913393	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	403670	108913393	37450629	2065	20915										
NUDCD1	0	genome.wustl.edu	37	chr8	110255436	110255436	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcaggctgacgatagatGaatactcgacgaaggcactc	13	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	110255436	110255436	G	T	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	missense	c.1554	p.F518L	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	51	0	0	77	16	17.2	-	-	-	T	110255436	G	T	110255436	3	4	240	1	0	0	0	0	1	0	0	0	10795	1281	45	2	201	2	NUDCD1	8	110255436	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1342043	110255436	36108586	2066	20916										
NUDCD1	0	genome.wustl.edu	37	chr8	110293355	110293355	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtcttctggaagccgtatGgttactgtcaaatcatcttc	8	10	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	110293355	110293355	G	A	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	silent	c.870	p.T290	0.024	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	90	0	0	81	16	16.49	-	-	-	A	110293355	G	A	110293355	2	1	240	1	0	0	0	0	0	0	0	1	10795	1335	47	4		4	NUDCD1	8	110293355	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37919	110293355	36070667	2067	20917										
PKHD1L1	0	genome.wustl.edu	37	chr8	110413741	110413741	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attaggtgaggattgcatatCattctgctaatgccaacagt	9	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	110413741	110413741	C	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.1297	p.H433D	1.000	pfam_PA14,smart_PA14	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	83	0	0	63	11	14.86	-	-	-	G	110413741	C	G	110413741	3	3	240	1	0	0	0	0	1	0	0	0	12046	826	29	2	1351	2	PKHD1L1	8	110413741	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	120386	110413741	35950281	2068	20918										
ENPP2	0	genome.wustl.edu	37	chr8	120629455	120629455	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagttgggtacaccggcctCatgtagggagagtgtgtgcc	15	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	120629455	120629455	C	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.606	p.M202I	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	82	0	0	94	20	17.54	-	-	-	A	120629455	C	A	120629455	3	1	240	1	0	0	0	0	1	0	0	0	5167	826	29	2	2300	2	ENPP2	8	120629455	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10215714	120629455	25734567	2069	20919										
TAF2	0	genome.wustl.edu	37	chr8	120756621	120756621	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaatctcctcctcatcttGagaactggaaaactaaaaca	4	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	120756621	120756621	G	C	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	missense	c.3121	p.Q1041E	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	75	0	0	90	25	21.74	-	-	-	C	120756621	G	C	120756621	3	2	240	1	0	0	0	0	1	0	0	0	15616	1299	45	2	490	2	TAF2	8	120756621	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	127166	120756621	25607401	2070	20920										
COL14A1	0	genome.wustl.edu	37	chr8	121209170	121209170	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcattcgatgtgggctcaGagaagacacgaattggtata	12	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	121209170	121209170	G	C	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.577	p.E193Q	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	92	0	0	99	30	23.08	-	-	-	C	121209170	G	C	121209170	3	2	240	1	0	0	0	0	1	0	0	0	3701	943	33	2	595	2	COL14A1	8	121209170	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	452549	121209170	25154852	2071	20921										
COL14A1	0	genome.wustl.edu	37	chr8	121344922	121344922	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcattcctggcacccctgGagtcccagggatcacaggaa	13	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	121344922	121344922	G	C	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.4733	p.G1578A	0.999	pfam_Collagen	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	151	0	0	239	34	12.45	-	-	-	C	121344922	G	C	121344922	3	2	240	1	0	0	0	0	1	0	0	0	3701	1174	41	2	4895	2	COL14A1	8	121344922	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	135752	121344922	25019100	2072	20922										
ZHX2	0	genome.wustl.edu	37	chr8	123963898	123963898	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaggacagttgggcagcaGaacttgaaaactcttccaaa	9	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	123963898	123963898	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.148	p.E50K	0.075	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	27	0	0	56	12	17.65	-	-	-	A	123963898	G	A	123963898	3	1	240	1	0	0	0	0	1	0	0	0	17772	943	33	2	150	2	ZHX2	8	123963898	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2618976	123963898	22400124	2073	20923										
ZHX2	0	genome.wustl.edu	37	chr8	123963911	123963911	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagcagaacttgaaaactCttccaaagaaaacgaagtga	9	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	123963911	123963911	C	G	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.161	p.S54C	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	31	0	0	45	21	31.82	-	-	-	G	123963911	C	G	123963911	3	3	240	1	0	0	0	0	1	0	0	0	17772	913	32	2	163	2	ZHX2	8	123963911	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13	123963911	22400111	2074	20924										
ZHX2	0	genome.wustl.edu	37	chr8	123964308	123964308	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggtgagtaaaacccccatCatgaagcctggaaaaccaaa	8	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	123964308	123964308	C	T	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	silent	c.558	p.I186	0.997	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	75	0	0	88	24	21.43	-	-	-	T	123964308	C	T	123964308	2	4	240	1	0	0	0	0	0	0	0	1	17772	816	29	2		2	ZHX2	8	123964308	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	397	123964308	22399714	2075	20925										
ATAD2	0	genome.wustl.edu	37	chr8	124351572	124351572	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctttcttttttgatatagGaggcttagcagcttgtttta	9	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	124351572	124351572	G	C	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.2833	p.P945A	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	109	0	0	135	21	13.46	-	-	-	C	124351572	G	C	124351572	3	2	240	1	0	0	0	0	1	0	0	0	1075	1174	41	2	1375	2	ATAD2	8	124351572	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	387264	124351572	22012450	2076	20926										
ATAD2	0	genome.wustl.edu	37	chr8	124373837	124373837	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaaagtgctgttcatcttCagaggaggaagatgaagtcg	12	7	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	124373837	124373837	C	A	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	nonsense	c.1099	p.E367*	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	74	0	0	118	21	15.11	-	-	-	A	124373837	C	A	124373837	4	1	240	1	0	0	0	0	0	1	0	0	1075	835	29	2	3153	2	ATAD2	8	124373837	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22265	124373837	21990185	2077	20927										
FAM91A1	0	genome.wustl.edu	37	chr8	124799973	124799973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgagtctctggacagctttCttatagaactagaaaaggta	9	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	124799973	124799973	C	G	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.1261	p.L421V	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	95	0	0	98	15	13.27	-	-	-	G	124799973	C	G	124799973	3	3	240	1	0	0	0	0	1	0	0	0	5697	913	32	2	1315	2	FAM91A1	8	124799973	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	426136	124799973	21564049	2078	20928										
RNF139	0	genome.wustl.edu	37	chr8	125498103	125498103	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagtattgttctgatcttGtcacaacgatcacttttcaa	5	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	125498103	125498103	G	C	SNP	RNF139	ENST00000303545	human	ensembl	69_37n	1	known	missense	c.213	p.L71F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881	137	0	0	75	117	60.94	-	-	-	C	125498103	G	C	125498103	3	2	240	1	0	0	0	0	1	0	0	0	13528	1368	48	4	219	4	RNF139	8	125498103	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	698130	125498103	20865919	2079	20929										
RNF139	0	genome.wustl.edu	37	chr8	125498340	125498340	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctactccagattcattccatCtattcacaattaattatttt	1	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	125498340	125498340	C	G	SNP	RNF139	ENST00000303545	human	ensembl	69_37n	1	known	missense	c.450	p.I150M	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881	115	0	0	144	25	14.79	-	-	-	G	125498340	C	G	125498340	3	3	240	1	0	0	0	0	1	0	0	0	13528	903	32	2	456	2	RNF139	8	125498340	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	237	125498340	20865682	2080	20930										
KIAA0196	0	genome.wustl.edu	37	chr8	126052129	126052129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctgttgtctcagaatctgCatctgcccaacctgtgcaca	7	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	126052129	126052129	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	missense	c.2862	p.M954I	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	87	0	0	92	15	14.02	-	-	-	T	126052129	C	T	126052129	3	4	240	1	0	0	0	0	1	0	0	0	8213	710	25	4	641	4	KIAA0196	8	126052129	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	553789	126052129	20311893	2081	20931										
NSMCE2	0	genome.wustl.edu	37	chr8	126194393	126194393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatttaaaattattggtaGagaagaaatttttggcttta	8	2	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	126194393	126194393	G	C	SNP	NSMCE2	ENST00000287437	human	ensembl	69_37n	1	known	missense	c.313	p.E105Q	0.999	NULL	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831	41	0	0	55	12	17.91	-	-	-	C	126194393	G	C	126194393	3	2	240	1	0	0	0	0	1	0	0	0	10749	943	33	2	323	2	NSMCE2	8	126194393	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	142264	126194393	20169629	2082	20932										
TRIB1	0	genome.wustl.edu	37	chr8	126448609	126448609	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctactgcacccctggtttGagtccgtcttggaacccggg	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	126448609	126448609	G	A	SNP	TRIB1	ENST00000311922	human	ensembl	69_37n	1	known	missense	c.1015	p.E339K	0.723	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB1	HGNC	ENSG00000173334	50	0	0	92	15	14.02	-	-	-	A	126448609	G	A	126448609	3	1	240	1	0	0	0	0	1	0	0	0	16578	1291	45	2	1025	2	TRIB1	8	126448609	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	254216	126448609	19915413	2083	20933										
GSDMC	0	genome.wustl.edu	37	chr8	130765006	130765006	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggagagatggtatgaaatGatggtagcaacccctcactc	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	130765006	130765006	G	C	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	nonsense	c.782	p.S261*	0.003	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	72	0	0	97	23	19.17	-	-	-	C	130765006	G	C	130765006	4	2	240	1	0	0	0	0	0	1	0	0	6869	1294	45	2	776	2	GSDMC	8	130765006	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4316397	130765006	15599016	2084	20934										
ASAP1	0	genome.wustl.edu	37	chr8	131124376	131124376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaggcagagggggagcctCcgtggttggtgatgtgggcg	22	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	131124376	131124376	C	T	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.2365	p.E789K	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	144	1	0.69	201	33	14.1	-	-	-	T	131124376	C	T	131124376	3	4	240	1	0	0	0	0	1	0	0	0	1014	864	30	2	1052	2	ASAP1	8	131124376	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	359370	131124376	15239646	2085	20935										
ASAP1	0	genome.wustl.edu	37	chr8	131199523	131199523	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggctttgtcaaatggcttCttgagatccttagaaacgag	10	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	131199523	131199523	C	G	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.489	p.K163N	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	174	1	0.57	160	31	16.23	-	-	-	G	131199523	C	G	131199523	3	3	240	1	0	0	0	0	1	0	0	0	1014	912	32	2	2996	2	ASAP1	8	131199523	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	75147	131199523	15164499	2086	20936										
TG	0	genome.wustl.edu	37	chr8	134030207	134030207	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaggcaccagagcccttGaactggacaggctcctggga	12	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	134030207	134030207	G	A	SNP	TG	ENST00000519178	human	ensembl	69_37n	1	novel	missense	c.2113	p.E705K	0.980	pfam_CarbesteraseB	pfam_CarbesteraseB,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TG	HGNC	ENSG00000042832	26	0	0	28	10	26.32	-	-	-	A	134030207	G	A	134030207	3	1	240	1	0	0	0	0	1	0	0	0	15908	1281	45	2	6897	2	TG	8	134030207	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2830684	134030207	12333815	2087	20937										
TG	0	genome.wustl.edu	37	chr8	134042144	134042144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgcagacccacatccgagGatttggcggggaccctcggc	15	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	134042144	134042144	G	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.7115	p.G2372V	0.000	pfam_CarbesteraseB,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	70	0	0	72	31	30.1	-	-	-	T	134042144	G	T	134042144	3	4	240	1	0	0	0	0	1	0	0	0	15908	1174	41	2	7277	2	TG	8	134042144	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11937	134042144	12321878	2088	20938										
KCNK9	0	genome.wustl.edu	37	chr8	140631134	140631134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgtccccatgcaggagaaGaagcccacagtcaccatgtt	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	140631134	140631134	G	C	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.492	p.F164L	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	60	0	0	38	56	59.57	-	-	-	C	140631134	G	C	140631134	3	2	240	1	0	0	0	0	1	0	0	0	8126	933	33	2	636	2	KCNK9	8	140631134	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6588990	140631134	5732888	2089	20939										
TRAPPC9	0	genome.wustl.edu	37	chr8	140898132	140898132	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgggtactcaccccactgcaGaggcgccagctgcaggtgct	13	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	140898132	140898132	G	A	SNP	TRAPPC9	ENST00000520857	human	ensembl	69_37n	-1	novel	missense	c.2576	p.S859F	0.998	NULL	pfam_TRAPP_II_complex_Trs120	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRAPPC9	HGNC	ENSG00000167632	20	0	0	20	12	37.5	-	-	-	A	140898132	G	A	140898132	3	1	240	1	0	0	0	0	1	0	0	0	16561	933	33	2	412	2	TRAPPC9	8	140898132	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	266998	140898132	5465890	2090	20940										
PTK2	0	genome.wustl.edu	37	chr8	141684440	141684440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcagggctgctgaggctgGcaaggcttcccagatgaccg	15	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	141684440	141684440	G	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.2696	p.A899V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	44	0	0	76	10	11.63	-	-	-	A	141684440	G	A	141684440	3	1	240	1	0	0	0	0	1	0	0	0	12843	1203	42	4	508	4	PTK2	8	141684440	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	786308	141684440	4679582	2091	20941										
SLC45A4	0	genome.wustl.edu	37	chr8	142238315	142238315	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatttgacctcagtggactCacaagggtctttggacggga	13	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	142238315	142238315	C	T	SNP	SLC45A4	ENST00000024061	human	ensembl	69_37n	-1	known	silent	c.51	p.V17	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	99	0	0	137	26	15.95	-	-	-	T	142238315	C	T	142238315	2	4	240	1	0	0	0	0	0	0	0	1	14732	813	29	2		2	SLC45A4	8	142238315	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	553875	142238315	4125707	2092	20942										
FLJ43860	0	genome.wustl.edu	37	chr8	142505477	142505477	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtcgtggatggtttccatCaccagcttgggggagccatg	14	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	142505477	142505477	C	A	SNP	FLJ43860	ENST00000521161	human	ensembl	69_37n	-1	putative	silent	c.264	p.V88	0.996	NULL	NULL	-	no_stop_codon	AC100803.1	Clone_based_vega_gene	ENSG00000226807	50	0	0	103	25	19.53	-	-	-	A	142505477	C	A	142505477	2	1	240	1	0	0	0	0	0	0	0	1	5976	813	29	2		2	FLJ43860	8	142505477	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267162	142505477	3858545	2093	20943										
BAI1	0	genome.wustl.edu	37	chr8	143603395	143603395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttctgctgggtgctcaccGaggcctggcagtcctacatg	12	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	143603395	143603395	G	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.3094	p.E1032K	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	62	0	0	17	36	67.92	-	-	-	A	143603395	G	A	143603395	3	1	240	1	0	0	0	0	1	0	0	0	1302	1059	37	1	3172	1	BAI1	8	143603395	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1097918	143603395	2760627	2094	20944										
GLI4	0	genome.wustl.edu	37	chr8	144351663	144351663	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacccagcaccacgagcctCagcttcacctccatgggcat	8	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	144351663	144351663	C	G	SNP	GLI4	ENST00000340042	human	ensembl	69_37n	1	known	missense	c.97	p.Q33E	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI4	HGNC	ENSG00000250571	55	0	0	33	82	71.3	-	-	-	G	144351663	C	G	144351663	3	3	240	1	0	0	0	0	1	0	0	0	6492	827	29	2	99	2	GLI4	8	144351663	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	748268	144351663	2012359	2095	20945										
ZNF623	0	genome.wustl.edu	37	chr8	144733536	144733536	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgggagagattttaactcAactacaaacgttaaaaataa	6	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	144733536	144733536	A	C	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	silent	c.1494	p.S498	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	60	0	0	76	11	12.64	-	-	-	C	144733536	A	C	144733536	2	2	240	1	0	0	0	0	0	0	0	1	18143	117	5	5		5	ZNF623	8	144733536	Silent	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	381873	144733536	1630486	2096	20946										
SCRIB	0	genome.wustl.edu	37	chr8	144890907	144890907	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggactaccctcttcctcctCctcctcctccttctgggccc	5	21	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	144890907	144890907	C	G	SNP	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663Q	0.999	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	58	0	0	65	39	37.5	-	-	-	G	144890907	C	G	144890907	3	3	240	1	0	0	0	0	1	0	0	0	14025	864	30	2	3072	2	SCRIB	8	144890907	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157371	144890907	1473115	2097	20947										
SCRIB	0	genome.wustl.edu	37	chr8	144892910	144892910	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacctatgggggcctccagGaactggatgacgctgacgcg	14	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	144892910	144892910	G	A	SNP	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	silent	c.1350	p.F450	0.999	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	33	0	0	55	13	19.12	-	-	-	A	144892910	G	A	144892910	2	1	240	1	0	0	0	0	0	0	0	1	14025	1165	41	2		2	SCRIB	8	144892910	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2003	144892910	1471112	2098	20948										
SCRIB	0	genome.wustl.edu	37	chr8	144895654	144895654	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcacgctggcagggacttGagcaggttctcccggagctc	13	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	144895654	144895654	G	C	SNP	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	silent	c.489	p.L163	0.992	smart_Leu-rich_rpt_typical-subtyp	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	35	0	0	59	13	18.06	-	-	-	C	144895654	G	C	144895654	2	2	240	1	0	0	0	0	0	0	0	1	14025	1277	45	2		2	SCRIB	8	144895654	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2744	144895654	1468368	2099	20949										
PLEC	0	genome.wustl.edu	37	chr8	145005745	145005745	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagccgggtgacggtggcgGagcgatcacaactgtatttc	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145005745	145005745	G	C	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.2672	p.S891C	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	35	0	0	20	45	69.23	-	-	-	C	145005745	G	C	145005745	3	2	240	1	0	0	0	0	1	0	0	0	12126	1174	41	2	11438	2	PLEC	8	145005745	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	110091	145005745	1358277	2100	20950										
CYC1	0	genome.wustl.edu	37	chr8	145151520	145151520	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactacgtcttctccctgctCacgggctactgcgagccacc	9	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145151520	145151520	C	T	SNP	CYC1	ENST00000318911	human	ensembl	69_37n	1	known	silent	c.645	p.L215	1.000	pfam_Cyt_c1,superfamily_Cyt_c_dom,prints_Cyt_c1	pfam_Cyt_c1,superfamily_Cyt_c_dom,superfamily_Cyt_c1_TM_anchor_C,prints_Cyt_c1	-	no_errors	CYC1	HGNC	ENSG00000179091	50	0	0	88	22	20	-	-	-	T	145151520	C	T	145151520	2	4	240	1	0	0	0	0	0	0	0	1	4166	813	29	2		2	CYC1	8	145151520	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	145775	145151520	1212502	2101	20951										
HEATR7A	0	genome.wustl.edu	37	chr8	145245805	145245805	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcagcgcctacgatgttctCttccatcagtggctgcagag	10	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145245805	145245805	C	G	SNP	HEATR7A	ENST00000326134	human	ensembl	69_37n	1	known	silent	c.681	p.L227	0.991	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR7A	HGNC	ENSG00000179832	27	0	0	51	9	15	-	-	-	G	145245805	C	G	145245805	2	3	240	1	0	0	0	0	0	0	0	1	7085	900	32	2		2	HEATR7A	8	145245805	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94285	145245805	1118217	2102	20952										
DGAT1	0	genome.wustl.edu	37	chr8	145540701	145540701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacctcgtggaagaaggccGaggccaggaacacccctgtc	13	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145540701	145540701	G	A	SNP	DGAT1	ENST00000332324	human	ensembl	69_37n	-1	known	missense	c.1232	p.S411L	0.967	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000	25	0	0	43	9	17.31	-	-	-	A	145540701	G	A	145540701	3	1	240	1	0	0	0	0	1	0	0	0	4493	1059	37	1	246	1	DGAT1	8	145540701	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	294896	145540701	823321	2103	20953										
CPSF1	0	genome.wustl.edu	37	chr8	145621872	145621872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgccacgcggccccgggcccCagccccctcctctgcgccgc	11	25	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145621872	145621872	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.2767	p.G923R	0.076	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	43	0	0	44	64	59.26	-	-	-	T	145621872	C	T	145621872	3	4	240	1	0	0	0	0	1	0	0	0	3854	594	21	4	1620	4	CPSF1	8	145621872	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	81171	145621872	742150	2104	20954										
MFSD3	0	genome.wustl.edu	37	chr8	145735845	145735845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgggtgctgtggtctgctCcatcgctggctcctccctgg	14	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145735845	145735845	C	T	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	1	known	missense	c.785	p.S262F	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	78	0	0	108	22	16.92	-	-	-	T	145735845	C	T	145735845	3	4	240	1	0	0	0	0	1	0	0	0	9603	855	30	2	791	2	MFSD3	8	145735845	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	113973	145735845	628177	2105	20955										
ARHGAP39	0	genome.wustl.edu	37	chr8	145763108	145763108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcggggagaggccctaccatCcggctcttcaacataaggct	12	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145763108	145763108	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	missense	c.2611	p.D871N	1.000	pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	195	1	0.51	129	165	55.93	-	-	-	T	145763108	C	T	145763108	3	4	240	1	0	0	0	0	1	0	0	0	886	855	30	2	757	2	ARHGAP39	8	145763108	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27263	145763108	600914	2106	20956										
ARHGAP39	0	genome.wustl.edu	37	chr8	145763136	145763136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaacataaggcttgggtttCtttctcaatttggacttctt	7	8	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	145763136	145763136	C	G	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	missense	c.2583	p.K861N	1.000	pfam_MyTH4_dom,pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	210	0	0	278	39	12.26	-	-	-	G	145763136	C	G	145763136	3	3	240	1	0	0	0	0	1	0	0	0	886	912	32	2	785	2	ARHGAP39	8	145763136	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28	145763136	600886	2107	20957										
ZNF7	0	genome.wustl.edu	37	chr8	146054860	146054860	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgctggtgtgtgtcctttCaggaggtggtaacatttggc	16	6	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	146054860	146054860	C	G	SNP	ZNF7	ENST00000446747	human	ensembl	69_37n	1	putative	missense	c.34	p.Q12E	1.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789	78	0	0	44	66	60	-	-	-	G	146054860	C	G	146054860	3	3	240	1	0	0	0	0	1	0	0	0	18198	841	29	2		2	ZNF7	8	146054860	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	291724	146054860	309162	2108	20958										
ZNF7	0	genome.wustl.edu	37	chr8	146067152	146067152	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgggaaattaatacacaGaaaattagcagatgtcaaga	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	146067152	146067152	G	C	SNP	ZNF7	ENST00000325241	human	ensembl	69_37n	1	known	missense	c.660	p.Q220H	0.080	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789	38	0	0	17	43	71.67	-	-	-	C	146067152	G	C	146067152	3	2	240	1	0	0	0	0	1	0	0	0	18198	933	33	2	674	2	ZNF7	8	146067152	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12292	146067152	296870	2109	20959										
ZNF250	0	genome.wustl.edu	37	chr8	146107011	146107011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtgtggatccgctggtgCtggatgagcactgagtactg	15	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	8	146107011	146107011	C	G	SNP	ZNF250	ENST00000292579	human	ensembl	69_37n	-1	known	missense	c.1572	p.Q524H	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF250	HGNC	ENSG00000196150	70	0	0	52	108	67.5	-	-	-	G	146107011	C	G	146107011	3	3	240	1	0	0	0	0	1	0	0	0	17891	796	28	4	114	4	ZNF250	8	146107011	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39859	146107011	257011	2110	20960										
DOCK8	0	genome.wustl.edu	37	chr9	328024	328024	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgctgctcatttacagatCtcagaaaattttcactgtga	6	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	328024	328024	C	G	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.897	p.I299M	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	114	0	0	135	25	15.62	-	-	-	G	328024	C	G	328024	3	3	240	1	0	0	0	0	1	0	0	0	4728	903	32	2	931	2	DOCK8	9	328024	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		328024	140885407	2111	20961										
KANK1	0	genome.wustl.edu	37	chr9	713021	713021	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctgggtttgacaggccatCagctgtgaagaccaaagagt	12	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	713021	713021	C	T	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	missense	c.2255	p.S752L	0.989	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	71	0	0	135	26	16.15	-	-	-	T	713021	C	T	713021	3	4	240	1	0	0	0	0	1	0	0	0	8030	838	29	2	2261	2	KANK1	9	713021	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	384997	713021	140500410	2112	20962										
KIAA0020	0	genome.wustl.edu	37	chr9	2811570	2811570	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagctcccgtctgcggacctCtgtatctttcttactgttga	9	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	2811570	2811570	C	T	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.1426	p.E476K	0.001	pfam_CPL,superfamily_ARM-type_fold,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	64	0	0	84	31	26.96	-	-	-	T	2811570	C	T	2811570	3	4	240	1	0	0	0	0	1	0	0	0	8204	922	32	2	536	2	KIAA0020	9	2811570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2098549	2811570	138401861	2113	20963										
KIAA1432	0	genome.wustl.edu	37	chr9	5765447	5765447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcagtaagtaggcaacatGctacccttctattcaacaca	6	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	5765447	5765447	G	A	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.2638	p.A880T	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	116	0	0	138	37	21.14	-	-	-	A	5765447	G	A	5765447	3	1	240	1	0	0	0	0	1	0	0	0	8285	1319	46	4	2712	4	KIAA1432	9	5765447	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2953877	5765447	135447984	2114	20964										
KIAA2026	0	genome.wustl.edu	37	chr9	5919831	5919831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggagtatttatggtattCaaaatggctccttctgggct	11	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	5919831	5919831	C	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.6165	p.L2055F	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	74	0	0	92	39	29.77	-	-	-	A	5919831	C	A	5919831	3	1	240	1	0	0	0	0	1	0	0	0	8322	825	29	2	150	2	KIAA2026	9	5919831	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	154384	5919831	135293600	2115	20965										
KIAA2026	0	genome.wustl.edu	37	chr9	5922142	5922142	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactccagtgttcccacctCgtgtcctaacaagaattgac	6	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	5922142	5922142	C	T	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.3854	p.R1285Q	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	163	0	0	163	71	30.34	-	-	-	T	5922142	C	T	5922142	3	4	240	1	0	0	0	0	1	0	0	0	8322	884	31	1	2461	1	KIAA2026	9	5922142	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2311	5922142	135291289	2116	20966										
KIAA2026	0	genome.wustl.edu	37	chr9	5929044	5929044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattataacattaaaattacCtgtttctttggaaagccttc	5	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	5929044	5929044	C	T	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.2498	p.R833K	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	96	0	0	73	16	17.98	-	-	-	T	5929044	C	T	5929044	3	4	240	1	0	0	0	0	1	0	0	0	8322	695	24	4	3825	4	KIAA2026	9	5929044	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6902	5929044	135284387	2117	20967										
RANBP6	0	genome.wustl.edu	37	chr9	6015410	6015410	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgcggcagccatttgtctCacctcataacctgctcttct	7	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	6015410	6015410	C	T	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	silent	c.198	p.V66	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	65	0	0	94	17	15.32	-	-	-	T	6015410	C	T	6015410	2	4	240	1	0	0	0	0	0	0	0	1	13114	813	29	2		2	RANBP6	9	6015410	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86366	6015410	135198021	2118	20968										
KDM4C	0	genome.wustl.edu	37	chr9	6880058	6880058	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgacttgaaagactagctCaaggtaaaacttgcttttta	7	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	6880058	6880058	C	G	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.676	p.Q226E	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	102	0	0	108	22	16.92	-	-	-	G	6880058	C	G	6880058	3	3	240	1	0	0	0	0	1	0	0	0	8184	827	29	2	764	2	KDM4C	9	6880058	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	864648	6880058	134333373	2119	20969										
PTPRD	0	genome.wustl.edu	37	chr9	8497247	8497247	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaaaaattactcacatgttCagtagtatcatcaaattccc	3	10	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	8497247	8497247	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.2344	p.E782K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	97	0	0	44	17	27.87	-	-	-	T	8497247	C	T	8497247	3	4	240	1	0	0	0	0	1	0	0	0	12882	835	29	2	3546	2	PTPRD	9	8497247	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1617189	8497247	132716184	2120	20970										
MPDZ	0	genome.wustl.edu	37	chr9	13222433	13222433	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatttgatcagtttctttCaatcttccatctctatcaag	4	9	6	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	13222433	13222433	C	G	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.546	p.L182F	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	108	0	0	66	64	49.23	-	-	-	G	13222433	C	G	13222433	3	3	240	1	0	0	0	0	1	0	0	0	9794	825	29	2	5743	2	MPDZ	9	13222433	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4725186	13222433	127990998	2121	20971										
CER1	0	genome.wustl.edu	37	chr9	14722627	14722627	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggtgccgtgtggtctttCctagaggcaggagtaccagc	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	14722627	14722627	C	G	SNP	CER1	ENST00000380911	human	ensembl	69_37n	-1	known	missense	c.44	p.G15A	0.915	pirsf_Cerberus	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Cerberus,pfscan_Cys_knot_C	-	no_errors	CER1	HGNC	ENSG00000147869	51	0	0	29	12	29.27	-	-	-	G	14722627	C	G	14722627	3	3	240	1	0	0	0	0	1	0	0	0	3294	855	30	2	767	2	CER1	9	14722627	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1500194	14722627	126490804	2122	20972										
FREM1	0	genome.wustl.edu	37	chr9	14824945	14824945	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgagaaactccaggagcctCttttggaagctggtcatcca	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	14824945	14824945	C	G	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.1930	p.E644Q	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	106	0	0	64	24	27.27	-	-	-	G	14824945	C	G	14824945	3	3	240	1	0	0	0	0	1	0	0	0	6093	922	32	2	4770	2	FREM1	9	14824945	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102318	14824945	126388486	2123	20973										
PSIP1	0	genome.wustl.edu	37	chr9	15472749	15472749	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctcccaccttttctcttCtgttttgagaattaggatgg	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	15472749	15472749	C	G	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	splice_site	c.859-1	e9-1	1.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985	243	0	0	113	56	32.94	-	-	-	G	15472749	C	G	15472749	5	3	240	1	0	0	0	0	0	0	1	0	12743	927	32	2	791	2	PSIP1	9	15472749	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	647804	15472749	125740682	2124	20974										
FAM154A	0	genome.wustl.edu	37	chr9	18928465	18928465	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcatccttggtggtggaaGagccttcaaagcgaccgcac	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	18928465	18928465	G	C	SNP	FAM154A	ENST00000380534	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337C	0.668	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	76	0	0	78	16	17.02	-	-	-	C	18928465	G	C	18928465	3	2	240	1	0	0	0	0	1	0	0	0	5503	942	33	2	418	2	FAM154A	9	18928465	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3455716	18928465	122284966	2125	20975										
HAUS6	0	genome.wustl.edu	37	chr9	19080562	19080562	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctaccgtcaatcttgcttGatcagcctgacaacgttcat	7	12	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	19080562	19080562	G	C	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.979	p.Q327E	0.999	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	158	0	0	135	33	19.64	-	-	-	C	19080562	G	C	19080562	3	2	240	1	0	0	0	0	1	0	0	0	7021	1299	45	2	1924	2	HAUS6	9	19080562	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	152097	19080562	122132869	2126	20976										
HAUS6	0	genome.wustl.edu	37	chr9	19096674	19096674	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaattatttttccttacttGaaaacttctttggtgagaga	7	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	19096674	19096674	G	C	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.222	p.F74L	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	91	0	0	50	27	35.06	-	-	-	C	19096674	G	C	19096674	3	2	240	1	0	0	0	0	1	0	0	0	7021	1281	45	2	2709	2	HAUS6	9	19096674	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16112	19096674	122116757	2127	20977										
DENND4C	0	genome.wustl.edu	37	chr9	19336401	19336401	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgcaaaggtcacaggtctCctcaatatcaggtaatacat	8	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	19336401	19336401	C	G	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.2015	p.S672C	0.998	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	65	0	0	27	33	55	-	-	-	G	19336401	C	G	19336401	3	3	240	1	0	0	0	0	1	0	0	0	4471	855	30	2	2073	2	DENND4C	9	19336401	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	239727	19336401	121877030	2128	20978										
IFNA16	0	genome.wustl.edu	37	chr9	21217191	21217191	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatttgtgccaggagtatCaaggccctcctattacccag	8	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	21217191	21217191	C	T	SNP	IFNA16	ENST00000380216	human	ensembl	69_37n	-1	known	silent	c.114	p.L38	0.003	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885	83	0	0	49	43	46.24	-	-	-	T	21217191	C	T	21217191	2	4	240	1	0	0	0	0	0	0	0	1	7589	825	29	2		2	IFNA16	9	21217191	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1880790	21217191	119996240	2129	20979										
IFNA17	0	genome.wustl.edu	37	chr9	21227955	21227955	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggacagagatggcttgagtcTtctggaactggttgccatca	13	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	21227955	21227955	T	C	SNP	IFNA17	ENST00000413767	human	ensembl	69_37n	-1	known	missense	c.218	p.K73R	0.933	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA17	HGNC	ENSG00000234829	198	1	0.5	115	74	39.15	-	-	-	C	21227955	T	C	21227955	3	2	240	1	0	0	0	0	1	0	0	0	7590	1609	56	5	355	5	IFNA17	9	21227955	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	10764	21227955	119985476	2130	20980										
IFNA17	0	genome.wustl.edu	37	chr9	21228097	21228097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggctgtgggtctgaggcaGatcacagcctagagaacaga	14	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	21228097	21228097	G	C	SNP	IFNA17	ENST00000413767	human	ensembl	69_37n	-1	known	missense	c.76	p.L26V	0.029	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA17	HGNC	ENSG00000234829	128	0	0	85	56	39.72	-	-	-	C	21228097	G	C	21228097	3	2	240	1	0	0	0	0	1	0	0	0	7590	933	33	2	497	2	IFNA17	9	21228097	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	142	21228097	119985334	2131	20981										
PLAA	0	genome.wustl.edu	37	chr9	26905603	26905603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgagaatcaacacctaaaGacttggctaattgtacagca	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	26905603	26905603	G	C	SNP	PLAA	ENST00000397292	human	ensembl	69_37n	-1	known	missense	c.2294	p.S765C	1.000	pfam_PUL,superfamily_ARM-type_fold	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055	64	0	0	68	15	18.07	-	-	-	C	26905603	G	C	26905603	3	2	240	1	0	0	0	0	1	0	0	0	12085	942	33	2	97	2	PLAA	9	26905603	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5677506	26905603	114307828	2132	20982										
TEK	0	genome.wustl.edu	37	chr9	27228264	27228264	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaggccatcatttgcccaGatattggtgtccttaaacag	10	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	27228264	27228264	G	A	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.3261	p.Q1087	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	108	0	0	60	40	39.6	-	-	-	A	27228264	G	A	27228264	2	1	240	1	0	0	0	0	0	0	0	1	15846	933	33	2		2	TEK	9	27228264	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	322661	27228264	113985167	2133	20983										
C9orf72	0	genome.wustl.edu	37	chr9	27550679	27550679	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggctttcactagagtgtctCtgtgtaagacatcttgaaaa	9	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	27550679	27550679	C	G	SNP	C9orf72	ENST00000380003	human	ensembl	69_37n	-1	known	missense	c.1118	p.R373T	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894	79	0	0	73	14	16.09	-	-	-	G	27550679	C	G	27550679	3	3	240	1	0	0	0	0	1	0	0	0	2520	913	32	2	339	2	C9orf72	9	27550679	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	322415	27550679	113662752	2134	20984										
NDUFB6	0	genome.wustl.edu	37	chr9	32570984	32570984	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatacttcatgtaataatGaataatccagacaggtacaa	6	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	32570984	32570984	G	A	SNP	NDUFB6	ENST00000379847	human	ensembl	69_37n	-1	known	missense	c.247	p.H83Y	1.000	pfam_NADH_DH_b-subcmplx_su6	pfam_NADH_DH_b-subcmplx_su6	-	no_errors	NDUFB6	HGNC	ENSG00000165264	41	0	0	33	7	17.5	-	-	-	A	32570984	G	A	32570984	3	1	240	1	0	0	0	0	1	0	0	0	10357	1290	45	2	151	2	NDUFB6	9	32570984	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5020305	32570984	108642447	2135	20985										
DNAJA1	0	genome.wustl.edu	37	chr9	33037105	33037105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagggtcgcctaatcatcGaatttaaggtaagctgtaat	9	6	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	33037105	33037105	G	A	SNP	DNAJA1	ENST00000330899	human	ensembl	69_37n	1	known	missense	c.967	p.E323K	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA1	HGNC	ENSG00000086061	59	0	0	74	40	35.09	-	-	-	A	33037105	G	A	33037105	3	1	240	1	0	0	0	0	1	0	0	0	4646	1059	37	1	993	1	DNAJA1	9	33037105	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	466121	33037105	108176326	2136	20986										
SMU1	0	genome.wustl.edu	37	chr9	33057640	33057640	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgctaacatttctgtatCtctgctgaaacacatgcaga	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	33057640	33057640	C	T	SNP	SMU1	ENST00000397149	human	ensembl	69_37n	-1	known	missense	c.823	p.D275N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Nucleoporin_Nup160,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SMU1	HGNC	ENSG00000122692	123	0	0	85	84	49.7	-	-	-	T	33057640	C	T	33057640	3	4	240	1	0	0	0	0	1	0	0	0	14906	913	32	2	742	2	SMU1	9	33057640	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20535	33057640	108155791	2137	20987										
UBAP2	0	genome.wustl.edu	37	chr9	33941794	33941794	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagactgcaggaggtaatGacggaagttgtatatgtgga	15	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	33941794	33941794	G	A	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	silent	c.1782	p.V594	0.929	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	125	0	0	108	32	22.86	-	-	-	A	33941794	G	A	33941794	2	1	240	1	0	0	0	0	0	0	0	1	16934	1277	45	2		2	UBAP2	9	33941794	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	884154	33941794	107271637	2138	20988										
UBAP2	0	genome.wustl.edu	37	chr9	33973198	33973198	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccccatgccttgggttgaGaaccttcctgcccctctccc	7	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	33973198	33973198	G	C	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	missense	c.558	p.F186L	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	100	0	0	123	22	15.07	-	-	-	C	33973198	G	C	33973198	3	2	240	1	0	0	0	0	1	0	0	0	16934	933	33	2	2893	2	UBAP2	9	33973198	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31404	33973198	107240233	2139	20989										
UBAP2	0	genome.wustl.edu	37	chr9	33989072	33989072	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctattctctttgttttctGaattttcttttgcaaaattc	3	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	33989072	33989072	G	C	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	nonsense	c.341	p.S114*	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	166	0	0	183	103	36.01	-	-	-	C	33989072	G	C	33989072	4	2	240	1	0	0	0	0	0	1	0	0	16934	1294	45	2	3118	2	UBAP2	9	33989072	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15874	33989072	107224359	2140	20990										
UBAP1	0	genome.wustl.edu	37	chr9	34234326	34234326	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgattgtttgcaggttgtCagagaagtacaggtaagtgg	14	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	34234326	34234326	C	T	SNP	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	silent	c.339	p.V113	1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	125	0	0	125	23	15.54	-	-	-	T	34234326	C	T	34234326	2	4	240	1	0	0	0	0	0	0	0	1	16933	813	29	2		2	UBAP1	9	34234326	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	245254	34234326	106979105	2141	20991										
UBAP1	0	genome.wustl.edu	37	chr9	34250668	34250668	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttagattctcgactatCtctttgcacatggacagctt	6	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	34250668	34250668	C	T	SNP	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	missense	c.1471	p.L491F	1.000	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	121	0	0	74	74	50	-	-	-	T	34250668	C	T	34250668	3	4	240	1	0	0	0	0	1	0	0	0	16933	913	32	2	1534	2	UBAP1	9	34250668	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16342	34250668	106962763	2142	20992										
KIF24	0	genome.wustl.edu	37	chr9	34257466	34257466	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcgagacacaagctgcttCtgtactggctgcactgtctg	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	34257466	34257466	C	G	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	missense	c.2139	p.Q713H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	67	0	0	83	16	16.16	-	-	-	G	34257466	C	G	34257466	3	3	240	1	0	0	0	0	1	0	0	0	8344	912	32	2	1979	2	KIF24	9	34257466	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6798	34257466	106955965	2143	20993										
DNAJB5	0	genome.wustl.edu	37	chr9	34996648	34996648	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggcgtcgcctcaaccctGatgggcgaactgtgcgcacc	12	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	34996648	34996648	G	A	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	1	known	missense	c.814	p.D272N	0.998	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	25	0	0	33	19	36.54	-	-	-	A	34996648	G	A	34996648	3	1	240	1	0	0	0	0	1	0	0	0	4658	1290	45	2	824	2	DNAJB5	9	34996648	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	739182	34996648	106216783	2144	20994										
C9orf131	0	genome.wustl.edu	37	chr9	35044904	35044904	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtgcccaggggttaaggcaGaggccccactctcccagaga	13	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35044904	35044904	G	C	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.2278	p.E760Q	0.003	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	27	0	0	55	12	17.91	-	-	-	C	35044904	G	C	35044904	3	2	240	1	0	0	0	0	1	0	0	0	2482	943	33	2	2300	2	C9orf131	9	35044904	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48256	35044904	106168527	2145	20995										
FANCG	0	genome.wustl.edu	37	chr9	35074432	35074432	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaccagagtgcagtggcctCatccctccgatctagcctct	8	17	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35074432	35074432	C	T	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	missense	c.1696	p.E566K	1.000	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	48	0	0	39	5	11.36	-	-	-	T	35074432	C	T	35074432	3	4	240	1	0	0	0	0	1	0	0	0	5714	835	29	2	180	2	FANCG	9	35074432	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29528	35074432	106138999	2146	20996										
UNC13B	0	genome.wustl.edu	37	chr9	35376133	35376133	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaccccaacctactgctatGagtgtgaaggcctgctctgg	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35376133	35376133	G	A	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.1513	p.E505K	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	57	0	0	99	14	12.39	-	-	-	A	35376133	G	A	35376133	3	1	240	1	0	0	0	0	1	0	0	0	17082	1291	45	2	1531	2	UNC13B	9	35376133	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	301701	35376133	105837298	2147	20997										
CD72	0	genome.wustl.edu	37	chr9	35610685	35610685	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaacttctacatgactctGactccagtgtccaccatgac	7	13	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35610685	35610685	G	C	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	nonsense	c.1016	p.S339*	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	64	0	0	71	10	12.35	-	-	-	C	35610685	G	C	35610685	4	2	240	1	0	0	0	0	0	1	0	0	3063	1294	45	2	67	2	CD72	9	35610685	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	234552	35610685	105602746	2148	20998										
TLN1	0	genome.wustl.edu	37	chr9	35714766	35714766	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagagtcttaccttgcagctCtgcaccagcaggggctgggg	14	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35714766	35714766	C	G	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.2862	p.Q954H	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	18	0	0	18	19	51.35	-	-	-	G	35714766	C	G	35714766	3	3	240	1	0	0	0	0	1	0	0	0	16042	912	32	2	4907	2	TLN1	9	35714766	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	104081	35714766	105498665	2149	20999										
RGP1	0	genome.wustl.edu	37	chr9	35752770	35752770	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctgagcaagtacctgtaGacaccttcagctgggacctg	11	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	35752770	35752770	G	C	SNP	RGP1	ENST00000456972	human	ensembl	69_37n	1	known	missense	c.1195	p.D399H	1.000	NULL	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185	64	0	0	104	14	11.86	-	-	-	C	35752770	G	C	35752770	3	2	240	1	0	0	0	0	1	0	0	0	13367	942	33	2	1233	2	RGP1	9	35752770	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38004	35752770	105460661	2150	21000										
CCIN	0	genome.wustl.edu	37	chr9	36169863	36169863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttcgagttcactgtaacGacttccttattaagtccatc	6	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	36169863	36169863	G	A	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.364	p.D122N	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	76	0	0	137	16	10.39	-	-	-	A	36169863	G	A	36169863	3	1	240	1	0	0	0	0	1	0	0	0	2905	1058	37	1	366	1	CCIN	9	36169863	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	417093	36169863	105043568	2151	21001										
ZBTB5	0	genome.wustl.edu	37	chr9	37441304	37441304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaagttatttcctctgctCttgttaagaaaattcgaaat	6	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	37441304	37441304	C	G	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.1245	p.K415N	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	52	0	0	56	11	16.42	-	-	-	G	37441304	C	G	37441304	3	3	240	1	0	0	0	0	1	0	0	0	17647	912	32	2	792	2	ZBTB5	9	37441304	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1271441	37441304	103772127	2152	21002										
ZNF658	0	genome.wustl.edu	37	chr9	40774052	40774052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catattggtaagttttctctCctgagtggggcctctgatgc	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	40774052	40774052	C	G	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.1223	p.G408A	0.426	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	151	0	0	124	66	34.74	-	-	-	G	40774052	C	G	40774052	3	3	240	1	0	0	0	0	1	0	0	0	18165	855	30	2	1960	2	ZNF658	9	40774052	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3332748	40774052	100439379	2153	21003										
PRKACG	0	genome.wustl.edu	37	chr9	71628914	71628914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggtgttttgagcggggtttCcccatctgtagaggaaatct	13	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	71628914	71628914	C	T	SNP	PRKACG	ENST00000377276	human	ensembl	69_37n	-1	known	missense	c.95	p.G32E	0.995	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	78	0	0	72	19	20.88	-	-	-	T	71628914	C	T	71628914	3	4	240	1	0	0	0	0	1	0	0	0	12580	855	30	2	964	2	PRKACG	9	71628914	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30854862	71628914	69584517	2154	21004										
TJP2	0	genome.wustl.edu	37	chr9	71833296	71833296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaagtactgggtttgctttCagcttgccttaatagcattt	9	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	71833296	71833296	C	G	SNP	TJP2	ENST00000377259	human	ensembl	69_37n	1	known	missense	c.294	p.F98L	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	TJP2	HGNC	ENSG00000119139	96	0	0	77	16	17.2	-	-	-	G	71833296	C	G	71833296	3	3	240	1	0	0	0	0	1	0	0	0	16025	841	29	2		2	TJP2	9	71833296	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	204382	71833296	69380135	2155	21005										
PTAR1	0	genome.wustl.edu	37	chr9	72333514	72333514	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgcaagtcactcaaagtcCccccagggctgtctgcaggt	12	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	72333514	72333514	C	A	SNP	PTAR1	ENST00000377200	human	ensembl	69_37n	-1	novel	missense	c.797	p.G266V	0.068	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647	84	0	0	64	20	23.81	-	-	-	A	72333514	C	A	72333514	3	1	240	1	0	0	0	0	1	0	0	0	12804	638	22	4		4	PTAR1	9	72333514	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	500218	72333514	68879917	2156	21006										
TRPM3	0	genome.wustl.edu	37	chr9	73151037	73151037	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtcactgatggagaagctCttcctggtgtgtgcatatgg	13	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	73151037	73151037	C	G	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.5037	p.K1679N	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	113	0	0	145	35	19.44	-	-	-	G	73151037	C	G	73151037	3	3	240	1	0	0	0	0	1	0	0	0	16683	912	32	2	171	2	TRPM3	9	73151037	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	817523	73151037	68062394	2157	21007										
TRPM3	0	genome.wustl.edu	37	chr9	73477859	73477859	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggccacctccttggaactCaatggtcccaaaagcatccg	8	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	73477859	73477859	C	G	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.433	p.E145Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	156	0	0	127	73	36.5	-	-	-	G	73477859	C	G	73477859	3	3	240	1	0	0	0	0	1	0	0	0	16683	835	29	2	4911	2	TRPM3	9	73477859	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	326822	73477859	67735572	2158	21008										
TRPM3	0	genome.wustl.edu	37	chr9	73736117	73736117	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaagtctgacagatggaaGaaaggctgcgtggcacagct	14	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	73736117	73736117	G	A	SNP	TRPM3	ENST00000377110	human	ensembl	69_37n	-1	known	missense	c.154	p.L52F	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	64	0	0	56	27	32.53	-	-	-	A	73736117	G	A	73736117	3	1	240	1	0	0	0	0	1	0	0	0	16683	942	33	2	5192	2	TRPM3	9	73736117	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	258258	73736117	67477314	2159	21009										
TMEM2	0	genome.wustl.edu	37	chr9	74365110	74365110	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttcttcaggtgagaatgcGaaggttgcccggtcttctcg	13	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	74365110	74365110	G	A	SNP	TMEM2	ENST00000377044	human	ensembl	69_37n	-1	known	silent	c.180	p.F60	0.403	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	164	1	0.61	122	59	32.6	-	-	-	A	74365110	G	A	74365110	2	1	240	1	0	0	0	0	0	0	0	1	16216	1049	37	1		1	TMEM2	9	74365110	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	628993	74365110	66848321	2160	21010										
C9orf85	0	genome.wustl.edu	37	chr9	74526653	74526653	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggctttgatttcggcgatGagctcccagaaaggcaacgt	13	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	74526653	74526653	G	T	SNP	C9orf85	ENST00000377031	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_DUF2039	-	no_errors	C9orf85	HGNC	ENSG00000155621	55	0	0	53	15	22.06	-	-	-	T	74526653	G	T	74526653	3	4	240	1	0	0	0	0	1	0	0	0	2526	1290	45	2	5	2	C9orf85	9	74526653	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	161543	74526653	66686778	2161	21011										
GDA	0	genome.wustl.edu	37	chr9	74838095	74838095	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcctgctctgagactttGatgggtgaactgggcaacat	11	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	74838095	74838095	G	C	SNP	GDA	ENST00000238018	human	ensembl	69_37n	1	known	missense	c.666	p.L222F	0.101	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125	162	0	0	133	31	18.9	-	-	-	C	74838095	G	C	74838095	3	2	240	1	0	0	0	0	1	0	0	0	6357	1281	45	2	692	2	GDA	9	74838095	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	311442	74838095	66375336	2162	21012										
PCSK5	0	genome.wustl.edu	37	chr9	78601083	78601083	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcaagtggtaaaaaagcgGacaaagagggattatgactt	12	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	78601083	78601083	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	silent	c.333	p.R111	1.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	110	0	0	88	34	27.87	-	-	-	A	78601083	G	A	78601083	2	1	240	1	0	0	0	0	0	0	0	1	11676	1161	41	2		2	PCSK5	9	78601083	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3762988	78601083	62612348	2163	21013										
PRUNE2	0	genome.wustl.edu	37	chr9	79321077	79321077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagtcctcacttggggtaGagccatcccattcagagcct	12	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79321077	79321077	G	C	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.5036	p.S1679C	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	84	0	0	84	24	22.22	-	-	-	C	79321077	G	C	79321077	3	2	240	1	0	0	0	0	1	0	0	0	12721	942	33	2	3201	2	PRUNE2	9	79321077	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	719994	79321077	61892354	2164	21014										
PRUNE2	0	genome.wustl.edu	37	chr9	79321864	79321864	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgctgtaatctgcatttCagtctccgttaatggtgaga	9	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79321864	79321864	C	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	nonsense	c.4249	p.E1417*	0.038	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	115	1	0.86	146	31	17.51	-	-	-	A	79321864	C	A	79321864	4	1	240	1	0	0	0	0	0	1	0	0	12721	835	29	2	3988	2	PRUNE2	9	79321864	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	787	79321864	61891567	2165	21015										
PRUNE2	0	genome.wustl.edu	37	chr9	79321897	79321897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgagaaagtccagggatCagggctgctttgttgattgt	15	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79321897	79321897	C	G	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.4216	p.D1406H	0.988	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	131	0	0	173	38	17.92	-	-	-	G	79321897	C	G	79321897	3	3	240	1	0	0	0	0	1	0	0	0	12721	826	29	2	4021	2	PRUNE2	9	79321897	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33	79321897	61891534	2166	21016										
PRUNE2	0	genome.wustl.edu	37	chr9	79325415	79325415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggggaaggggattcatctCccacaaaatctgtcaggctc	11	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79325415	79325415	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.698	p.G233E	0.964	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	74	0	0	76	22	22.45	-	-	-	T	79325415	C	T	79325415	3	4	240	1	0	0	0	0	1	0	0	0	12721	855	30	2	7539	2	PRUNE2	9	79325415	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3518	79325415	61888016	2167	21017										
VPS13A	0	genome.wustl.edu	37	chr9	79841411	79841411	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggatacaaaatttacaaAgaaggagtaaaagatccaga	9	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79841411	79841411	A	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.1254	p.K418N	0.805	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	109	0	0	67	21	23.86	-	-	-	C	79841411	A	C	79841411	3	2	240	1	0	0	0	0	1	0	0	0	17286	69	3	5	1312	5	VPS13A	9	79841411	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	515996	79841411	61372020	2168	21018										
VPS13A	0	genome.wustl.edu	37	chr9	79843067	79843067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaagttttttgtccacttGaaaagtatgtctattgttct	7	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79843067	79843067	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.1482	p.L494F	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	107	0	0	63	29	31.52	-	-	-	C	79843067	G	C	79843067	3	2	240	1	0	0	0	0	1	0	0	0	17286	1281	45	2	1548	2	VPS13A	9	79843067	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1656	79843067	61370364	2169	21019										
VPS13A	0	genome.wustl.edu	37	chr9	79852968	79852968	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactggcttaccagataattCagaaaaaccccgcctcctgt	6	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	79852968	79852968	C	T	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.1646	p.S549L	0.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	59	0	0	66	15	18.52	-	-	-	T	79852968	C	T	79852968	3	4	240	1	0	0	0	0	1	0	0	0	17286	838	29	2	1716	2	VPS13A	9	79852968	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9901	79852968	61360463	2170	21020										
CEP78	0	genome.wustl.edu	37	chr9	80879216	80879216	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtttcatgctttcttggatCtccttaaagatgctgggtta	9	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	80879216	80879216	C	T	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	missense	c.1612	p.L538F	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	125	0	0	99	24	19.51	-	-	-	T	80879216	C	T	80879216	3	4	240	1	0	0	0	0	1	0	0	0	3291	913	32	2	1662	2	CEP78	9	80879216	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1026248	80879216	60334215	2171	21021										
FRMD3	0	genome.wustl.edu	37	chr9	85862997	85862997	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaaggaggaggagcagggGaaatacaaagagcagcagtc	15	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	85862997	85862997	G	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.1630	p.P544T	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	40	0	0	49	16	24.62	-	-	-	T	85862997	G	T	85862997	3	4	240	1	0	0	0	0	1	0	0	0	6099	1174	41	2	167	2	FRMD3	9	85862997	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4983781	85862997	55350434	2172	21022										
FRMD3	0	genome.wustl.edu	37	chr9	85863082	85863082	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcacccgaatatggccagtCagaatgtcatagctccacga	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	85863082	85863082	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	silent	c.1545	p.L515	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	54	0	0	53	21	28	-	-	-	T	85863082	C	T	85863082	2	4	240	1	0	0	0	0	0	0	0	1	6099	813	29	2		2	FRMD3	9	85863082	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	85	85863082	55350349	2173	21023										
C9orf64	0	genome.wustl.edu	37	chr9	86571086	86571086	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatggcaccaaccttcgtcGagggctctgttgacggcggc	14	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	86571086	86571086	G	A	SNP	C9orf64	ENST00000376344	human	ensembl	69_37n	-1	known	silent	c.330	p.L110	0.992	pfam_DUF2419	pfam_DUF2419	-	no_errors	C9orf64	HGNC	ENSG00000165118	49	0	0	60	12	16.67	-	-	-	A	86571086	G	A	86571086	2	1	240	1	0	0	0	0	0	0	0	1	2514	1045	37	1		1	C9orf64	9	86571086	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	708004	86571086	54642345	2174	21024										
RMI1	0	genome.wustl.edu	37	chr9	86617579	86617579	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatagggttctcagtaccaGaaatgaaacagtcaaaaaag	9	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	86617579	86617579	G	C	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	missense	c.1678	p.E560Q	1.000	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	104	0	0	87	60	40.82	-	-	-	C	86617579	G	C	86617579	3	2	240	1	0	0	0	0	1	0	0	0	13481	943	33	2	1680	2	RMI1	9	86617579	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46493	86617579	54595852	2175	21025										
NTRK2	0	genome.wustl.edu	37	chr9	87325699	87325699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcaaacctgcagataccCaattgtggtaatttattttt	7	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	87325699	87325699	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	silent	c.576	p.P192	1.000	smart_Cys-rich_flank_reg_C	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	87	0	0	90	21	18.75	-	-	-	T	87325699	C	T	87325699	2	4	240	1	0	0	0	0	0	0	0	1	10780	581	21	4		4	NTRK2	9	87325699	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	708120	87325699	53887732	2176	21026										
NTRK2	0	genome.wustl.edu	37	chr9	87636238	87636238	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccaggaggtgtatgagctGatgctggggtgctggcagcg	18	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	87636238	87636238	G	C	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	silent	c.2403	p.L801	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	51	0	0	25	26	50.98	-	-	-	C	87636238	G	C	87636238	2	2	240	1	0	0	0	0	0	0	0	1	10780	1277	45	2		2	NTRK2	9	87636238	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	310539	87636238	53577193	2177	21027										
AGTPBP1	0	genome.wustl.edu	37	chr9	88248161	88248161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagaagatatgttctccttCattacaacttttcttaaatt	3	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	88248161	88248161	C	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.1467	p.M489I	0.028	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	45	0	0	54	8	12.9	-	-	-	T	88248161	C	T	88248161	3	4	240	1	0	0	0	0	1	0	0	0	400	826	29	2	2301	2	AGTPBP1	9	88248161	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	611923	88248161	52965270	2178	21028										
ZCCHC6	0	genome.wustl.edu	37	chr9	88916365	88916365	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgcattggcttggctttctGaggtgtgcactgtatgggct	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	88916365	88916365	G	A	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	nonsense	c.4246	p.Q1416*	0.899	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	240	1	0.41	162	118	42.14	-	-	-	A	88916365	G	A	88916365	4	1	240	1	0	0	0	0	0	1	0	0	17688	1299	45	2	249	2	ZCCHC6	9	88916365	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	668204	88916365	52297066	2179	21029										
DAPK1	0	genome.wustl.edu	37	chr9	90311999	90311999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgactattttgctgcaaatGatcccacgtcaatccatgtt	6	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	90311999	90311999	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	missense	c.2491	p.D831N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	220	0	0	239	56	18.98	-	-	-	A	90311999	G	A	90311999	3	1	240	1	0	0	0	0	1	0	0	0	4267	1290	45	2	2573	2	DAPK1	9	90311999	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1395634	90311999	50901432	2180	21030										
NOL8	0	genome.wustl.edu	37	chr9	95062252	95062252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgtaaacgagggtcttcCtgccagacaatctttccagg	9	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	95062252	95062252	C	T	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	silent	c.3222	p.Q1074	0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	167	0	0	172	32	15.69	-	-	-	T	95062252	C	T	95062252	2	4	240	1	0	0	0	0	0	0	0	1	10599	680	24	4		4	NOL8	9	95062252	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4750253	95062252	46151179	2181	21031										
NOL8	0	genome.wustl.edu	37	chr9	95077077	95077077	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacccatcttccatggatatGatactgggatcctcatgttt	8	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	95077077	95077077	G	A	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	silent	c.1830	p.I610	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	129	0	0	85	22	20.56	-	-	-	A	95077077	G	A	95077077	2	1	240	1	0	0	0	0	0	0	0	1	10599	1280	45	2		2	NOL8	9	95077077	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14825	95077077	46136354	2182	21032										
OGN	0	genome.wustl.edu	37	chr9	95155461	95155461	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtaagggtggtacagcatCaatgtcaacttcttcacagt	10	8	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	95155461	95155461	C	G	SNP	OGN	ENST00000262551	human	ensembl	69_37n	-1	known	missense	c.334	p.D112H	0.993	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OGN	HGNC	ENSG00000106809	144	0	0	137	25	15.43	-	-	-	G	95155461	C	G	95155461	3	3	240	1	0	0	0	0	1	0	0	0	10919	826	29	2	578	2	OGN	9	95155461	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78384	95155461	46057970	2183	21033										
ASPN	0	genome.wustl.edu	37	chr9	95227238	95227238	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttttgcttctgcaattctGatatggaacaccgtcacccc	7	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	95227238	95227238	G	A	SNP	ASPN	ENST00000375544	human	ensembl	69_37n	-1	known	silent	c.675	p.I225	0.990	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819	101	0	0	94	23	19.66	-	-	-	A	95227238	G	A	95227238	2	1	240	1	0	0	0	0	0	0	0	1	1061	1280	45	2		2	ASPN	9	95227238	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	71777	95227238	45986193	2184	21034										
PTPDC1	0	genome.wustl.edu	37	chr9	96847012	96847012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtggctgtttcctcagtcaGccatgcagagggaaacccaa	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	96847012	96847012	G	A	SNP	PTPDC1	ENST00000288976	human	ensembl	69_37n	1	putative	missense	c.200	p.S67N	0.987	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	16	0	0	19	5	20.83	-	-	-	A	96847012	G	A	96847012	3	1	240	1	0	0	0	0	1	0	0	0	12854	971	34	4	288	4	PTPDC1	9	96847012	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1619774	96847012	44366419	2185	21035										
FAM22F	0	genome.wustl.edu	37	chr9	97081091	97081091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcctgtggtgggaacccaCgacatagaccatgccaggga	13	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	97081091	97081091	C	T	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.1927	p.V643M	0.002	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	41	0	0	32	14	30.43	-	-	-	T	97081091	C	T	97081091	3	4	240	1	0	0	0	0	1	0	0	0	5587	536	19	1	347	1	FAM22F	9	97081091	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	234079	97081091	44132340	2186	21036										
FBP1	0	genome.wustl.edu	37	chr9	97369126	97369126	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcttcctctggatgtactCagtgacggcagggtcaaagt	11	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	97369126	97369126	C	T	SNP	FBP1	ENST00000375326	human	ensembl	69_37n	-1	known	missense	c.676	p.E226K	1.000	pfam_FBPase_class-1/SBPase,prints_FBPase_class-1/SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPase_class-1/SBPase,prints_SBPase	-	no_errors	FBP1	HGNC	ENSG00000165140	126	0	0	75	41	35.34	-	-	-	T	97369126	C	T	97369126	3	4	240	1	0	0	0	0	1	0	0	0	5751	835	29	2	352	2	FBP1	9	97369126	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	288035	97369126	43844305	2187	21037										
C9orf3	0	genome.wustl.edu	37	chr9	97563058	97563058	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcatgttggtgtttgcagtCacatggaatacccctgccgc	12	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	97563058	97563058	C	G	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.1138	p.H380D	1.000	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	45	0	0	44	20	31.25	-	-	-	G	97563058	C	G	97563058	3	3	240	1	0	0	0	0	1	0	0	0	2502	826	29	2	1152	2	C9orf3	9	97563058	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	193932	97563058	43650373	2188	21038										
PTCH1	0	genome.wustl.edu	37	chr9	98224263	98224263	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccggtttcccagtcactgtCaaatgcatcctgaagtccta	7	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	98224263	98224263	C	G	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.2578	p.D860H	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	142	0	0	164	48	22.64	-	-	-	G	98224263	C	G	98224263	3	3	240	1	0	0	0	0	1	0	0	0	12810	826	29	2	1797	2	PTCH1	9	98224263	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	661205	98224263	42989168	2189	21039										
ZNF782	0	genome.wustl.edu	37	chr9	99580245	99580245	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgatgttctctaaggcttGatttttgactgaaagttctc	8	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	99580245	99580245	G	C	SNP	ZNF782	ENST00000481138	human	ensembl	69_37n	-1	known	nonsense	c.2060	p.S687*	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597	135	0	0	138	25	15.34	-	-	-	C	99580245	G	C	99580245	4	2	240	1	0	0	0	0	0	1	0	0	18248	1294	45	2	43	2	ZNF782	9	99580245	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1355982	99580245	41633186	2190	21040										
TSTD2	0	genome.wustl.edu	37	chr9	100388039	100388039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggctatgtggaaggcactCttttaaagggttcttttcat	10	6	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	100388039	100388039	C	G	SNP	TSTD2	ENST00000341170	human	ensembl	69_37n	-1	known	missense	c.406	p.E136Q	0.273	NULL	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925	134	0	0	137	39	22.16	-	-	-	G	100388039	C	G	100388039	3	3	240	1	0	0	0	0	1	0	0	0	16772	922	32	2	1176	2	TSTD2	9	100388039	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	807794	100388039	40825392	2191	21041										
NCBP1	0	genome.wustl.edu	37	chr9	100424412	100424412	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatcattcagccactccttCagtgctcttgcaaagtatgt	6	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	100424412	100424412	C	T	SNP	NCBP1	ENST00000375147	human	ensembl	69_37n	1	known	silent	c.1689	p.F563	1.000	pfam_MIF4G-like_typ-2,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-2,pfam_MIF4G-like_typ-1,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	NCBP1	HGNC	ENSG00000136937	83	0	0	83	20	19.42	-	-	-	T	100424412	C	T	100424412	2	4	240	1	0	0	0	0	0	0	0	1	10283	825	29	2		2	NCBP1	9	100424412	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36373	100424412	40789019	2192	21042										
COL15A1	0	genome.wustl.edu	37	chr9	101832093	101832093	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggggaagattctggaccaGaaagcatacagctgtgctaa	12	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	101832093	101832093	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	silent	c.4092	p.Q1364	1.000	pfam_Collagenase_NC10/endostatin,superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	41	0	0	45	8	15.09	-	-	-	A	101832093	G	A	101832093	2	1	240	1	0	0	0	0	0	0	0	1	3702	933	33	2		2	COL15A1	9	101832093	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1407681	101832093	39381338	2193	21043										
TGFBR1	0	genome.wustl.edu	37	chr9	101908834	101908834	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaatccttcaaacgtgctGacatctatgcaatgggctta	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	101908834	101908834	G	T	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	1	known	missense	c.1198	p.D400Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	191	0	0	170	46	21.3	-	-	-	T	101908834	G	T	101908834	3	4	240	1	0	0	0	0	1	0	0	0	15916	1290	45	2	1224	2	TGFBR1	9	101908834	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	76741	101908834	39304597	2194	21044										
NR4A3	0	genome.wustl.edu	37	chr9	102590586	102590586	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccttgatcaaagtggagGaggggcgggcgcccagctac	17	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	102590586	102590586	G	T	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	nonsense	c.295	p.E99*	1.000	prints_NOR1_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	22	0	0	29	9	23.68	-	-	-	T	102590586	G	T	102590586	4	4	240	1	0	0	0	0	0	1	0	0	10707	1175	41	2	301	2	NR4A3	9	102590586	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	681752	102590586	38622845	2195	21045										
INVS	0	genome.wustl.edu	37	chr9	103059203	103059203	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctgacccaaccagctacCagctcaggaagcacctgtcc	7	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	103059203	103059203	C	T	SNP	INVS	ENST00000262457	human	ensembl	69_37n	1	known	nonsense	c.2791	p.Q931*	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509	57	0	0	82	18	18	-	-	-	T	103059203	C	T	103059203	4	4	240	1	0	0	0	0	0	1	0	0	7841	595	21	4	2845	4	INVS	9	103059203	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	468617	103059203	38154228	2196	21046										
TEX10	0	genome.wustl.edu	37	chr9	103091439	103091439	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctgaatctacaagatctCagttcttctgtctgatagat	6	9	5	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	103091439	103091439	C	A	SNP	TEX10	ENST00000374902	human	ensembl	69_37n	-1	known	silent	c.1608	p.L536	0.519	NULL	pfam_IPI1-like_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	93	0	0	70	21	23.08	-	-	-	A	103091439	C	A	103091439	2	1	240	1	0	0	0	0	0	0	0	1	15867	813	29	2		2	TEX10	9	103091439	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32236	103091439	38121992	2197	21047										
BAAT	0	genome.wustl.edu	37	chr9	104130414	104130414	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaattacctttggatgtctCaggagaaagttggcagcctc	10	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	104130414	104130414	C	G	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	silent	c.657	p.L219	0.011	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	87	0	0	35	34	49.28	-	-	-	G	104130414	C	G	104130414	2	3	240	1	0	0	0	0	0	0	0	1	1284	813	29	2		2	BAAT	9	104130414	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1038975	104130414	37083017	2198	21048										
BAAT	0	genome.wustl.edu	37	chr9	104130452	104130452	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctcaaaatattccaaatCtgttacttctggtttgcggg	7	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	104130452	104130452	C	T	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	missense	c.619	p.D207N	0.347	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	103	0	0	64	13	16.88	-	-	-	T	104130452	C	T	104130452	3	4	240	1	0	0	0	0	1	0	0	0	1284	913	32	2	645	2	BAAT	9	104130452	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38	104130452	37082979	2199	21049										
ZNF189	0	genome.wustl.edu	37	chr9	104170579	104170579	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atactggtgagaaaccttttCagtgcaatgaatgtgggaaa	11	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	104170579	104170579	C	T	SNP	ZNF189	ENST00000339664	human	ensembl	69_37n	1	known	nonsense	c.529	p.Q177*	0.967	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF189	HGNC	ENSG00000136870	72	0	0	74	16	17.78	-	-	-	T	104170579	C	T	104170579	4	4	240	1	0	0	0	0	0	1	0	0	17850	827	29	2	539	2	ZNF189	9	104170579	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40127	104170579	37042852	2200	21050										
SMC2	0	genome.wustl.edu	37	chr9	106887204	106887204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgatgcagaggaaagtgagGagactttgaaaaacactaaa	12	4	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	106887204	106887204	G	C	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	missense	c.2269	p.E757Q	1.000	NULL	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	49	0	0	50	8	13.79	-	-	-	C	106887204	G	C	106887204	3	2	240	1	0	0	0	0	1	0	0	0	14872	1175	41	2	2335	2	SMC2	9	106887204	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2716625	106887204	34326227	2201	21051										
OR13C2	0	genome.wustl.edu	37	chr9	107367193	107367193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagatgggctgaacaggtaGaggaagctttgcttctcccc	12	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	107367193	107367193	G	C	SNP	OR13C2	ENST00000542196	human	ensembl	69_37n	-1	known	missense	c.716	p.S239C	0.657	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019	95	0	0	53	29	35.37	-	-	-	C	107367193	G	C	107367193	3	2	240	1	0	0	0	0	1	0	0	0	11007	942	33	2	243	2	OR13C2	9	107367193	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	479989	107367193	33846238	2202	21052										
OR13C9	0	genome.wustl.edu	37	chr9	107380461	107380461	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcagaaaaaattccaccaGaatggtttggttttcccatt	6	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	107380461	107380461	G	T	SNP	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	missense	c.25	p.L9M	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	87	0	0	44	14	24.14	-	-	-	T	107380461	G	T	107380461	3	4	240	1	0	0	0	0	1	0	0	0	11012	933	33	2	934	2	OR13C9	9	107380461	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13268	107380461	33832970	2203	21053										
OR13D1	0	genome.wustl.edu	37	chr9	107456838	107456838	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgccatgactgaattctttCtggtggggctttcccaatat	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	107456838	107456838	C	T	SNP	OR13D1	ENST00000318763	human	ensembl	69_37n	1	known	silent	c.136	p.L46	0.409	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13D1	HGNC	ENSG00000179055	83	0	0	71	21	22.58	-	-	-	T	107456838	C	T	107456838	2	4	240	1	0	0	0	0	0	0	0	1	11013	912	32	2		2	OR13D1	9	107456838	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76377	107456838	33756593	2204	21054										
OR13D1	0	genome.wustl.edu	37	chr9	107457492	107457492	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgagaattaattgtgctGagggaagaaagaaagccttc	11	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	107457492	107457492	G	A	SNP	OR13D1	ENST00000318763	human	ensembl	69_37n	1	known	missense	c.790	p.E264K	0.009	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13D1	HGNC	ENSG00000179055	163	0	0	175	43	19.72	-	-	-	A	107457492	G	A	107457492	3	1	240	1	0	0	0	0	1	0	0	0	11013	1291	45	2	792	2	OR13D1	9	107457492	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	654	107457492	33755939	2205	21055										
ZNF462	0	genome.wustl.edu	37	chr9	109688481	109688481	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccaacagatatgggtaaGagataccagtgagccccaga	11	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	109688481	109688481	G	C	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.2288	p.R763T	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	63	0	0	43	31	41.89	-	-	-	C	109688481	G	C	109688481	3	2	240	1	0	0	0	0	1	0	0	0	18022	942	33	2	2294	2	ZNF462	9	109688481	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2230989	109688481	31524950	2206	21056										
ZNF462	0	genome.wustl.edu	37	chr9	109690550	109690550	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatgcaagactgtcccctGagaaaagcctgcagctagct	11	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	109690550	109690550	G	T	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	nonsense	c.4357	p.E1453*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	32	0	0	40	22	35.48	-	-	-	T	109690550	G	T	109690550	4	4	240	1	0	0	0	0	0	1	0	0	18022	1291	45	2	4363	2	ZNF462	9	109690550	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2069	109690550	31522881	2207	21057										
ZNF462	0	genome.wustl.edu	37	chr9	109736552	109736552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaccacatcgtgctgcaccGaggtaacctttctaacttgg	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	109736552	109736552	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.7010	p.R2337Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	95	0	0	103	20	16.13	-	-	-	A	109736552	G	A	109736552	3	1	240	1	0	0	0	0	1	0	0	0	18022	1058	37	1	6860	1	ZNF462	9	109736552	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46002	109736552	31476879	2208	21058										
RAD23B	0	genome.wustl.edu	37	chr9	110086287	110086287	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agataggtcgagagaatcctCaattacttcaggtgactaat	9	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	110086287	110086287	C	G	SNP	RAD23B	ENST00000358015	human	ensembl	69_37n	1	known	missense	c.934	p.Q312E	1.000	pfam_XPC-bd,superfamily_XPC-bd,smart_STI1_HS-bd,prints_Rad23,tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318	91	0	0	101	25	19.84	-	-	-	G	110086287	C	G	110086287	3	3	240	1	0	0	0	0	1	0	0	0	13066	827	29	2	964	2	RAD23B	9	110086287	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	349735	110086287	31127144	2209	21059										
RAD23B	0	genome.wustl.edu	37	chr9	110091887	110091887	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttgcttgtgagaagaatGagaatttggctgccaatttt	10	4	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	110091887	110091887	G	A	SNP	RAD23B	ENST00000358015	human	ensembl	69_37n	1	known	missense	c.1180	p.E394K	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,prints_Rad23,tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318	77	0	0	66	25	27.47	-	-	-	A	110091887	G	A	110091887	3	1	240	1	0	0	0	0	1	0	0	0	13066	1291	45	2	1218	2	RAD23B	9	110091887	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5600	110091887	31121544	2210	21060										
ACTL7B	0	genome.wustl.edu	37	chr9	111618099	111618099	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgggcttcatcttgagctGagtggccgcacctgtgtccc	12	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	111618099	111618099	G	C	SNP	ACTL7B	ENST00000374667	human	ensembl	69_37n	-1	known	missense	c.112	p.Q38E	0.043	NULL	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7B	HGNC	ENSG00000148156	40	0	0	45	9	16.67	-	-	-	C	111618099	G	C	111618099	3	2	240	1	0	0	0	0	1	0	0	0	201	1299	45	2	1139	2	ACTL7B	9	111618099	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1526212	111618099	29595332	2211	21061										
IKBKAP	0	genome.wustl.edu	37	chr9	111640963	111640963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaggagggccaggtcctCcagcggactgccttctttga	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	111640963	111640963	C	G	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.3640	p.E1214Q	1.000	pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	67	0	0	68	11	13.75	-	-	-	G	111640963	C	G	111640963	3	3	240	1	0	0	0	0	1	0	0	0	7664	864	30	2	374	2	IKBKAP	9	111640963	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22864	111640963	29572468	2212	21062										
EPB41L4B	0	genome.wustl.edu	37	chr9	111979286	111979286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagaggctgtagtttgagtGgtgctggtgctgatgctgat	17	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	111979286	111979286	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	69_37n	-1	known	missense	c.1549	p.H517Y	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4B	HGNC	ENSG00000095203	176	0	0	235	66	21.93	-	-	-	A	111979286	G	A	111979286	3	1	240	1	0	0	0	0	1	0	0	0	5193	1348	47	4	1197	4	EPB41L4B	9	111979286	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338323	111979286	29234145	2213	21063										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112899055	112899055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaaaaggaggccaagtttGagctgcgtgccttccatgag	13	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	112899055	112899055	G	C	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.1231	p.E411Q	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	54	0	0	70	13	15.66	-	-	-	C	112899055	G	C	112899055	3	2	240	1	0	0	0	0	1	0	0	0	11483	1291	45	2	1261	2	PALM2-AKAP2	9	112899055	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	919769	112899055	28314376	2214	21064										
OR2K2	0	genome.wustl.edu	37	chr9	114089923	114089923	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtctattttttgtgcatttGatgaagaaggctttaggtac	10	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	114089923	114089923	G	C	SNP	OR2K2	ENST00000374428	human	ensembl	69_37n	-1	known	nonsense	c.878	p.S293*	0.171	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133	136	0	0	123	27	18	-	-	-	C	114089923	G	C	114089923	4	2	240	1	0	0	0	0	0	1	0	0	11078	1294	45	2	162	2	OR2K2	9	114089923	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1190868	114089923	27123508	2215	21065										
ZNF483	0	genome.wustl.edu	37	chr9	114296571	114296571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaaaattagagttgatttCccagctaaagtgggttgaat	9	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	114296571	114296571	C	T	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	missense	c.659	p.S220F	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	106	0	0	94	32	25.4	-	-	-	T	114296571	C	T	114296571	3	4	240	1	0	0	0	0	1	0	0	0	18032	855	30	2	673	2	ZNF483	9	114296571	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	206648	114296571	26916860	2216	21066										
ZNF483	0	genome.wustl.edu	37	chr9	114304256	114304256	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcattcagaccttgttctGaaccgcaaggagaaaaccgc	8	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	114304256	114304256	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	silent	c.1041	p.L347	0.003	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	48	0	0	40	14	25.93	-	-	-	A	114304256	G	A	114304256	2	1	240	1	0	0	0	0	0	0	0	1	18032	1277	45	2		2	ZNF483	9	114304256	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7685	114304256	26909175	2217	21067										
C9orf84	0	genome.wustl.edu	37	chr9	114454056	114454056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttcagactcatctgataGacatttttgctgatcagtga	8	9	4	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	114454056	114454056	G	C	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.4009	p.L1337V	0.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	82	0	0	63	44	41.12	-	-	-	C	114454056	G	C	114454056	3	2	240	1	0	0	0	0	1	0	0	0	2525	933	33	2	333	2	C9orf84	9	114454056	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	149800	114454056	26759375	2218	21068										
C9orf84	0	genome.wustl.edu	37	chr9	114470194	114470194	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatttgaatgaaggacagtCagtgttaaacctgttggaaa	10	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	114470194	114470194	C	A	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	silent	c.2307	p.L769	0.018	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	79	0	0	62	40	39.22	-	-	-	A	114470194	C	A	114470194	2	1	240	1	0	0	0	0	0	0	0	1	2525	813	29	2		2	C9orf84	9	114470194	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16138	114470194	26743237	2219	21069										
KIAA1958	0	genome.wustl.edu	37	chr9	115407974	115407974	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctgtatttaatattaatGatgacttgaatgatctgtgt							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	115407974	115407974	G	A	SNP	KIAA1958	ENST00000536272	human	ensembl	69_37n	1	known	missense	c.1300	p.D434N	1.000	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	96	0	0	87	23	20.91	-	-	-	A	115407974	G	A	115407974	3	1	240	1	0	0	0	0	1	0	0	0	8316	1290	45	2	1222	2	KIAA1958	9	115407974	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	937780	115407974	25805457	2220	21070	208	2								
KIAA1958	0	genome.wustl.edu	37	chr9	115407975	115407975	+	Missense_Mutation	SNP	A	A	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgtatttaatattaatgAtgacttgaatgatctgtgta							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	115407975	115407975	A	T	SNP	KIAA1958	ENST00000536272	human	ensembl	69_37n	1	known	missense	c.1301	p.D434V	1.000	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	97	0	0	88	23	20.72	-	-	-	T	115407975	A	T	115407975	3	4	240	1	0	0	0	0	1	0	0	0	8316	333	12	5	1223	5	KIAA1958	9	115407975	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	1	115407975	25805456	2221	21071	208	2								
C9orf43	0	genome.wustl.edu	37	chr9	116191543	116191543	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggctgccaggcaaaagaaGatctcctttaacttttcaga	8	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	116191543	116191543	G	A	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	silent	c.1263	p.K421	0.000	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	78	0	0	83	21	20.19	-	-	-	A	116191543	G	A	116191543	2	1	240	1	0	0	0	0	0	0	0	1	2508	933	33	2		2	C9orf43	9	116191543	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	783568	116191543	25021888	2222	21072										
AMBP	0	genome.wustl.edu	37	chr9	116840487	116840487	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagggccccgaggctcctCatggctatgggctcctctgc	13	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	116840487	116840487	C	G	SNP	AMBP	ENST00000265132	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.961	NULL	pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin,pfscan_Prot_inh_Kunz-m	-	no_errors	AMBP	HGNC	ENSG00000106927	42	0	0	41	9	18	-	-	-	G	116840487	C	G	116840487	3	3	240	1	0	0	0	0	1	0	0	0	564	826	29	2	1095	2	AMBP	9	116840487	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	648944	116840487	24372944	2223	21073										
COL27A1	0	genome.wustl.edu	37	chr9	116972001	116972001	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcctgccagggtctgatgGagaacgagtaagtttgcttc	14	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	116972001	116972001	G	C	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.2315	p.G772A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	79	0	0	91	18	16.51	-	-	-	C	116972001	G	C	116972001	3	2	240	1	0	0	0	0	1	0	0	0	3715	1174	41	2	2357	2	COL27A1	9	116972001	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	131514	116972001	24241430	2224	21074										
AKNA	0	genome.wustl.edu	37	chr9	117113142	117113142	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagtgtctaacttactctCgccctgccctggtgagcagg	10	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	117113142	117113142	C	T	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.3218	p.R1073Q	0.997	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	24	0	0	26	8	23.53	-	-	-	T	117113142	C	T	117113142	3	4	240	1	0	0	0	0	1	0	0	0	463	884	31	1	1133	1	AKNA	9	117113142	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	141141	117113142	24100289	2225	21075										
PAPPA	0	genome.wustl.edu	37	chr9	119033603	119033603	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttccatatctgctctgcaGagaccaaggtgaacaatgcg	9	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	119033603	119033603	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	splice_site	c.2862-1	e9-1	1.000	-	-	-	no_errors	PAPPA	HGNC	ENSG00000182752	111	0	0	106	32	23.19	-	-	-	T	119033603	G	T	119033603	5	4	240	1	0	0	0	0	0	0	1	0	11505	956	33	2	2895	2	PAPPA	9	119033603	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1920461	119033603	22179828	2226	21076										
ASTN2	0	genome.wustl.edu	37	chr9	119976778	119976778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctcctcacagtcatagtCatccaggatgggagtctccc	8	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	119976778	119976778	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.874	p.D292N	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	54	0	0	61	16	20.78	-	-	-	T	119976778	C	T	119976778	3	4	240	1	0	0	0	0	1	0	0	0	1069	826	29	2	3304	2	ASTN2	9	119976778	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	943175	119976778	21236653	2227	21077										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123232427	123232427	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgagaaaaatgttccacttGaaaccgattgttttcttcaa	6	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	123232427	123232427	G	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	nonsense	c.1930	p.Q644*	0.933	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	99	0	0	57	15	20.83	-	-	-	A	123232427	G	A	123232427	4	1	240	1	0	0	0	0	0	1	0	0	3175	1299	45	2	3839	2	CDK5RAP2	9	123232427	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3255649	123232427	17981004	2228	21078										
FBXW2	0	genome.wustl.edu	37	chr9	123527011	123527011	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagaggccagcgactaatCaggctctctgtccgcaagtc	12	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	123527011	123527011	C	G	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	silent	c.1191	p.L397	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	87	0	0	96	19	16.52	-	-	-	G	123527011	C	G	123527011	2	3	240	1	0	0	0	0	0	0	0	1	5812	813	29	2		2	FBXW2	9	123527011	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	294584	123527011	17686420	2229	21079										
OR1J1	0	genome.wustl.edu	37	chr9	125239396	125239396	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcactgaagcaattatgttCttgtcattggtgttgctgga	10	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	125239396	125239396	C	G	SNP	OR1J1	ENST00000259357	human	ensembl	69_37n	-1	known	missense	c.810	p.K270N	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J1	HGNC	ENSG00000136834	107	0	0	114	35	23.49	-	-	-	G	125239396	C	G	125239396	3	3	240	1	0	0	0	0	1	0	0	0	11032	912	32	2	161	2	OR1J1	9	125239396	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1712385	125239396	15974035	2230	21080										
ZBTB6	0	genome.wustl.edu	37	chr9	125674315	125674315	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccacatctccttgctgttCaaactggaaatgcagaacat	7	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	125674315	125674315	C	G	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	missense	c.37	p.E13Q	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	44	0	0	36	28	43.75	-	-	-	G	125674315	C	G	125674315	3	3	240	1	0	0	0	0	1	0	0	0	17648	835	29	2	1241	2	ZBTB6	9	125674315	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	434919	125674315	15539116	2231	21081										
RABGAP1	0	genome.wustl.edu	37	chr9	125748604	125748604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctcccaggagtgaagtgGaagccttaaggatgatgtcc	13	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	125748604	125748604	G	A	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	missense	c.496	p.E166K	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	101	0	0	76	40	34.48	-	-	-	A	125748604	G	A	125748604	3	1	240	1	0	0	0	0	1	0	0	0	13047	1175	41	2	506	2	RABGAP1	9	125748604	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	74289	125748604	15464827	2232	21082										
STRBP	0	genome.wustl.edu	37	chr9	125898322	125898322	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaatgtttactcatacctGagggataatcttctttttct	5	7	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	125898322	125898322	G	A	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	nonsense	c.1771	p.Q591*	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	148	0	0	85	47	35.61	-	-	-	A	125898322	G	A	125898322	4	1	240	1	0	0	0	0	0	1	0	0	15418	1299	45	2	263	2	STRBP	9	125898322	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	149718	125898322	15315109	2233	21083										
DENND1A	0	genome.wustl.edu	37	chr9	126214573	126214573	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgaacttgtagacagtcttCatggccggatttgctttggt	11	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	126214573	126214573	C	T	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	missense	c.1185	p.M395I	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	204	0	0	137	87	38.84	-	-	-	T	126214573	C	T	126214573	3	4	240	1	0	0	0	0	1	0	0	0	4462	826	29	2	1879	2	DENND1A	9	126214573	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	316251	126214573	14998858	2234	21084										
NEK6	0	genome.wustl.edu	37	chr9	127083810	127083810	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgagctgaacattgtgctgGagttggctgacgcaggggac	16	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	127083810	127083810	G	C	SNP	NEK6	ENST00000373600	human	ensembl	69_37n	1	known	missense	c.469	p.E157Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408	55	0	0	58	14	19.44	-	-	-	C	127083810	G	C	127083810	3	2	240	1	0	0	0	0	1	0	0	0	10400	1175	41	2	566	2	NEK6	9	127083810	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	869237	127083810	14129621	2235	21085										
OLFML2A	0	genome.wustl.edu	37	chr9	127572155	127572155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccacgtggtgtaccagggcGccttctactacaaccgcgcc	11	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	127572155	127572155	G	A	SNP	OLFML2A	ENST00000373580	human	ensembl	69_37n	1	known	missense	c.1423	p.A475T	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	63	0	0	56	7	11.11	-	-	-	A	127572155	G	A	127572155	3	1	240	1	0	0	0	0	1	0	0	0	10930	1087	38	1	1453	1	OLFML2A	9	127572155	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	488345	127572155	13641276	2236	21086										
OLFML2A	0	genome.wustl.edu	37	chr9	127572254	127572254	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgcccgacgtggtatatGaggacaccacaccttggaag	12	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	127572254	127572254	G	A	SNP	OLFML2A	ENST00000373580	human	ensembl	69_37n	1	known	missense	c.1522	p.E508K	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	26	0	0	20	17	45.95	-	-	-	A	127572254	G	A	127572254	3	1	240	1	0	0	0	0	1	0	0	0	10930	1291	45	2	1552	2	OLFML2A	9	127572254	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99	127572254	13641177	2237	21087										
SCAI	0	genome.wustl.edu	37	chr9	127781102	127781102	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttattacaattaccaataatGagtgcgtcagccagagacaa	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	127781102	127781102	G	C	SNP	SCAI	ENST00000373549	human	ensembl	69_37n	-1	known	silent	c.906	p.L302	1.000	pfam_DUF3550,pirsf_UCP013022	pfam_DUF3550,pirsf_UCP013022	-	no_errors	SCAI	HGNC	ENSG00000173611	58	0	0	64	15	18.99	-	-	-	C	127781102	G	C	127781102	2	2	240	1	0	0	0	0	0	0	0	1	13956	1277	45	2		2	SCAI	9	127781102	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	208848	127781102	13432329	2238	21088										
ZBTB43	0	genome.wustl.edu	37	chr9	129595032	129595032	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgaacccaagagtgtttGagaacattctcctatctagt	8	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	129595032	129595032	G	C	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	1	known	missense	c.244	p.E82Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	79	0	0	58	39	39.8	-	-	-	C	129595032	G	C	129595032	3	2	240	1	0	0	0	0	1	0	0	0	17640	1291	45	2	246	2	ZBTB43	9	129595032	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1813930	129595032	11618399	2239	21089										
RALGPS1	0	genome.wustl.edu	37	chr9	129974506	129974506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accctgctcaaggaagggcgGaagcctgcggtaagtacaga	14	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	129974506	129974506	G	A	SNP	RALGPS1	ENST00000438723	human	ensembl	69_37n	1	known	missense	c.131	p.G44E	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGPS1	HGNC	ENSG00000136828	42	0	0	38	18	32.14	-	-	-	A	129974506	G	A	129974506	3	1	240	1	0	0	0	0	1	0	0	0	13100	1161	41	2	1398	2	RALGPS1	9	129974506	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	379474	129974506	11238925	2240	21090										
ZNF79	0	genome.wustl.edu	37	chr9	130206315	130206315	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttttttttcaggctggaaGattatatctggatcaccacc	7	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	130206315	130206315	G	A	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	silent	c.336	p.K112	0.743	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	29	0	0	36	7	16.28	-	-	-	A	130206315	G	A	130206315	2	1	240	1	0	0	0	0	0	0	0	1	18254	933	33	2		2	ZNF79	9	130206315	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	231809	130206315	11007116	2241	21091										
ZNF79	0	genome.wustl.edu	37	chr9	130206421	130206421	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacgggaccagtgaccttGagaagagcttcaatctgaga	11	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	130206421	130206421	G	C	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	missense	c.442	p.E148Q	0.073	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	44	0	0	46	22	32.35	-	-	-	C	130206421	G	C	130206421	3	2	240	1	0	0	0	0	1	0	0	0	18254	1291	45	2	460	2	ZNF79	9	130206421	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	106	130206421	11007010	2242	21092										
PTRH1	0	genome.wustl.edu	37	chr9	130477846	130477846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaccgcttccccggggggcGaggctccaaaacacatcggc	12	17	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	130477846	130477846	G	A	SNP	PTRH1	ENST00000419060	human	ensembl	69_37n	-1	known	missense	c.73	p.R25C	0.086	NULL	pfam_Pept_tRNA_hydro,superfamily_Pept_tRNA_hydro	-	no_errors	PTRH1	HGNC	ENSG00000187024	20	0	0	28	6	17.65	-	-	-	A	130477846	G	A	130477846	3	1	240	1	0	0	0	0	1	0	0	0	12899	1058	37	1	591	1	PTRH1	9	130477846	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	271425	130477846	10735585	2243	21093										
SH2D3C	0	genome.wustl.edu	37	chr9	130501096	130501096	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaccttgtcgaacttctCatagcgccgggcctggctgc	13	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	130501096	130501096	C	A	SNP	SH2D3C	ENST00000314830	human	ensembl	69_37n	-1	known	nonsense	c.2512	p.E838*	1.000	smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370	35	0	0	47	8	14.29	-	-	-	A	130501096	C	A	130501096	4	1	240	1	0	0	0	0	0	1	0	0	14322	835	29	2	74	2	SH2D3C	9	130501096	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23250	130501096	10712335	2244	21094										
ST6GALNAC6	0	genome.wustl.edu	37	chr9	130648825	130648825	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtccctggcctagcggctGggcggaggctgcttctcctc	15	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	130648825	130648825	G	A	SNP	ST6GALNAC6	ENST00000373142	human	ensembl	69_37n	-1	putative	nonsense	c.1051	p.Q351*	0.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	54	0	0	70	16	18.6	-	-	-	A	130648825	G	A	130648825	4	1	240	1	0	0	0	0	0	1	0	0	15319	1363	47	4		4	ST6GALNAC6	9	130648825	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	147729	130648825	10564606	2245	21095										
CERCAM	0	genome.wustl.edu	37	chr9	131198082	131198082	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgatgacagcggccgcctCatcagctggagcggctccca	13	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131198082	131198082	C	A	SNP	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	silent	c.1686	p.L562	0.682	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	16	0	0	8	7	46.67	-	-	-	A	131198082	C	A	131198082	2	1	240	1	0	0	0	0	0	0	0	1	3295	813	29	2		2	CERCAM	9	131198082	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	549257	131198082	10015349	2246	21096										
SPTAN1	0	genome.wustl.edu	37	chr9	131346738	131346738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcggttgcagcagctcttcCgggatgttgaggatgaggag	17	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131346738	131346738	C	T	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.2371	p.R791W	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	59	0	0	72	19	20.88	-	-	-	T	131346738	C	T	131346738	3	4	240	1	0	0	0	0	1	0	0	0	15208	643	23	1	2433	1	SPTAN1	9	131346738	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148656	131346738	9866693	2247	21097										
SPTAN1	0	genome.wustl.edu	37	chr9	131371503	131371503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggatgagattgaggcttgGatcagtgaaaaattgcaaac	13	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131371503	131371503	G	C	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.4698	p.W1566C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	60	0	0	93	14	13.08	-	-	-	C	131371503	G	C	131371503	3	2	240	1	0	0	0	0	1	0	0	0	15208	1183	41	2	4836	2	SPTAN1	9	131371503	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24765	131371503	9841928	2248	21098										
PKN3	0	genome.wustl.edu	37	chr9	131469042	131469042	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctgcgggacagccagctGaaggtggccctgctgcggat	16	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131469042	131469042	G	A	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	silent	c.462	p.L154	0.999	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	15	0	0	16	5	23.81	-	-	-	A	131469042	G	A	131469042	2	1	240	1	0	0	0	0	0	0	0	1	12055	1277	45	2		2	PKN3	9	131469042	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	97539	131469042	9744389	2249	21099										
ZDHHC12	0	genome.wustl.edu	37	chr9	131484719	131484719	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaggggcccctggttacctGaggctggggctgcacattca	15	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131484719	131484719	G	A	SNP	ZDHHC12	ENST00000372667	human	ensembl	69_37n	-1	known	nonsense	c.277	p.Q93*	0.998	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC12	HGNC	ENSG00000160446	60	0	0	78	17	17.89	-	-	-	A	131484719	G	A	131484719	4	1	240	1	0	0	0	0	0	1	0	0	17698	1299	45	2	584	2	ZDHHC12	9	131484719	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15677	131484719	9728712	2250	21100										
ZDHHC12	0	genome.wustl.edu	37	chr9	131486279	131486279	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggtccggctcaccggtatCgtgcaggaagagcaccagcg	16	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131486279	131486279	C	G	SNP	ZDHHC12	ENST00000372667	human	ensembl	69_37n	-1	known	missense	c.94	p.D32H	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC12	HGNC	ENSG00000160446	22	0	0	16	7	30.43	-	-	-	G	131486279	C	G	131486279	3	3	240	1	0	0	0	0	1	0	0	0	17698	884	31	3	729	3	ZDHHC12	9	131486279	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1560	131486279	9727152	2251	21101										
CCBL1	0	genome.wustl.edu	37	chr9	131597799	131597799	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgaggaagtagctgccctGagggatgatgggcttcaggc	17	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131597799	131597799	G	C	SNP	CCBL1	ENST00000436267	human	ensembl	69_37n	-1	known	missense	c.1285	p.Q429E	0.997	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	CCBL1	HGNC	ENSG00000171097	36	0	0	39	10	20.41	-	-	-	C	131597799	G	C	131597799	3	2	240	1	0	0	0	0	1	0	0	0	2757	1299	45	2	281	2	CCBL1	9	131597799	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	111520	131597799	9615632	2252	21102										
NUP188	0	genome.wustl.edu	37	chr9	131743579	131743579	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataagatgtctttctacaatGaactttataaacacaagcct	4	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131743579	131743579	G	A	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.1426	p.E476K	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	133	0	0	181	25	12.14	-	-	-	A	131743579	G	A	131743579	3	1	240	1	0	0	0	0	1	0	0	0	10831	1291	45	2	1484	2	NUP188	9	131743579	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145780	131743579	9469852	2253	21103										
CRAT	0	genome.wustl.edu	37	chr9	131857735	131857735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgtccaggagcgccttctCcaggtaatgcgccaggcggg	14	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131857735	131857735	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.1822	p.E608K	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	33	0	0	41	6	12.77	-	-	-	T	131857735	C	T	131857735	3	4	240	1	0	0	0	0	1	0	0	0	3877	864	30	2	62	2	CRAT	9	131857735	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	114156	131857735	9355696	2254	21104										
PPP2R4	0	genome.wustl.edu	37	chr9	131900019	131900019	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggctgcctccaggctcaGatgaaccaaggctggtggcc	13	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	131900019	131900019	G	C	SNP	PPP2R4	ENST00000455240	human	ensembl	69_37n	1	putative	missense	c.274	p.D92H	0.000	NULL	pfam_Phstyr_phstse_ac	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R4	HGNC	ENSG00000119383	56	0	0	86	26	23.21	-	-	-	C	131900019	G	C	131900019	3	2	240	1	0	0	0	0	1	0	0	0	12468	957	33	2		2	PPP2R4	9	131900019	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42284	131900019	9313412	2255	21105										
C9orf50	0	genome.wustl.edu	37	chr9	132375826	132375826	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacactcccaaacacccgctCggacgccactggcagggcgg	12	17	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	132375826	132375826	C	G	SNP	C9orf50	ENST00000372478	human	ensembl	69_37n	-1	known	missense	c.931	p.E311Q	0.000	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058	49	0	0	54	13	19.12	-	-	-	G	132375826	C	G	132375826	3	3	240	1	0	0	0	0	1	0	0	0	2512	893	31	3	376	3	C9orf50	9	132375826	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	475807	132375826	8837605	2256	21106										
TOR1A	0	genome.wustl.edu	37	chr9	132584995	132584995	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatttttgccggtgcctgtCcacccgtgcagggagagcgt	13	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	132584995	132584995	C	T	SNP	TOR1A	ENST00000351698	human	ensembl	69_37n	-1	known	nonsense	c.309	p.W103*	1.000	pfam_Torsin,pirsf_Torsin_subgr	pfam_Torsin,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827	194	0	0	182	38	17.19	-	-	-	T	132584995	C	T	132584995	4	4	240	1	0	0	0	0	0	1	0	0	16467	856	30	2	705	2	TOR1A	9	132584995	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	209169	132584995	8628436	2257	21107										
GPR107	0	genome.wustl.edu	37	chr9	132891015	132891015	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctacaactttctcaggaaGaagaagacttggaaatggag	10	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	132891015	132891015	G	C	SNP	GPR107	ENST00000372406	human	ensembl	69_37n	1	known	missense	c.1681	p.E561Q	1.000	NULL	pfam_TM_rcpt_euk,pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	GPR107	HGNC	ENSG00000148358	134	0	0	142	22	13.41	-	-	-	C	132891015	G	C	132891015	3	2	240	1	0	0	0	0	1	0	0	0	6673	943	33	2	1755	2	GPR107	9	132891015	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	306020	132891015	8322416	2258	21108										
ABL1	0	genome.wustl.edu	37	chr9	133759439	133759439	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggcggcctgaatgaagatGagcgccttctccccaaagac	12	12	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	133759439	133759439	G	C	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.1819	p.E607Q	1.000	NULL	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	19	0	0	18	5	21.74	-	-	-	C	133759439	G	C	133759439	3	2	240	1	0	0	0	0	1	0	0	0	92	1291	45	2	1944	2	ABL1	9	133759439	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	868424	133759439	7453992	2259	21109										
NUP214	0	genome.wustl.edu	37	chr9	134053765	134053765	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaaatgtgcaggaattgaaGaataaccctgcaaccccttc	8	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	134053765	134053765	G	C	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.3390	p.K1130N	0.995	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	78	0	0	62	41	39.81	-	-	-	C	134053765	G	C	134053765	3	2	240	1	0	0	0	0	1	0	0	0	10835	933	33	2	3481	2	NUP214	9	134053765	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	294326	134053765	7159666	2260	21110										
NUP214	0	genome.wustl.edu	37	chr9	134072842	134072842	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtccaagctgggagagcttCtgtttccaagttctttggct	11	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	134072842	134072842	C	A	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.3964	p.L1322M	0.996	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	98	0	0	109	30	21.58	-	-	-	A	134072842	C	A	134072842	3	1	240	1	0	0	0	0	1	0	0	0	10835	912	32	2	4075	2	NUP214	9	134072842	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19077	134072842	7140589	2261	21111										
SETX	0	genome.wustl.edu	37	chr9	135139998	135139998	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggttgtggatcccaaagGaatattcctcctttgacctc	10	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	135139998	135139998	G	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	silent	c.7749	p.F2583	0.009	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	74	0	0	80	23	22.33	-	-	-	A	135139998	G	A	135139998	2	1	240	1	0	0	0	0	0	0	0	1	14229	1165	41	2		2	SETX	9	135139998	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1067156	135139998	6073433	2262	21112										
DDX31	0	genome.wustl.edu	37	chr9	135487494	135487494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttttcacgtgtgctttcctCttctttctagtcaaggcact	6	12	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	135487494	135487494	C	G	SNP	DDX31	ENST00000372159	human	ensembl	69_37n	-1	known	missense	c.2289	p.K763N	0.005	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	63	0	0	80	54	40.3	-	-	-	G	135487494	C	G	135487494	3	3	240	1	0	0	0	0	1	0	0	0	4387	912	32	2	274	2	DDX31	9	135487494	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	347496	135487494	5725937	2263	21113										
OBP2B	0	genome.wustl.edu	37	chr9	136081768	136081768	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaccaatttcttaaattCttccagggcctcccggttgg	8	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	136081768	136081768	C	T	SNP	OBP2B	ENST00000372034	human	ensembl	69_37n	-1	known	missense	c.424	p.E142K	0.796	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102	82	0	0	114	18	13.53	-	-	-	T	136081768	C	T	136081768	3	4	240	1	0	0	0	0	1	0	0	0	10884	922	32	2	96	2	OBP2B	9	136081768	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	594274	136081768	5131663	2264	21114										
SURF2	0	genome.wustl.edu	37	chr9	136226967	136226967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatccagtgatgagggggGagctgcaagtgatgacagca	15	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	136226967	136226967	G	T	SNP	SURF2	ENST00000371964	human	ensembl	69_37n	1	known	missense	c.479	p.G160V	0.007	pfam_Surf2	pfam_Surf2	-	no_errors	SURF2	HGNC	ENSG00000148291	47	0	0	45	11	19.64	-	-	-	T	136226967	G	T	136226967	3	4	240	1	0	0	0	0	1	0	0	0	15495	1174	41	2	493	2	SURF2	9	136226967	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145199	136226967	4986464	2265	21115										
SARDH	0	genome.wustl.edu	37	chr9	136555504	136555504	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccagtcctctctcacctGgctgggccctggatactgat	9	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	136555504	136555504	G	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.2067	p.A689	0.868	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	25	0	0	39	13	25	-	-	-	T	136555504	G	T	136555504	2	4	240	1	0	0	0	0	0	0	0	1	13928	1335	47	4		4	SARDH	9	136555504	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	328537	136555504	4657927	2266	21116										
BRD3	0	genome.wustl.edu	37	chr9	136905274	136905274	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccttcactttgtgcttctCcttctccttctccttgtcct	5	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	136905274	136905274	C	G	SNP	BRD3	ENST00000303407	human	ensembl	69_37n	-1	known	missense	c.1525	p.E509Q	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925	68	0	0	42	33	44	-	-	-	G	136905274	C	G	136905274	3	3	240	1	0	0	0	0	1	0	0	0	1511	864	30	2	671	2	BRD3	9	136905274	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	349770	136905274	4308157	2267	21117										
COL5A1	0	genome.wustl.edu	37	chr9	137688259	137688259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccagctggccctcctggtGaacgggtaagcagctggagc	15	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	137688259	137688259	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.2839	p.E947K	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	69	0	0	56	17	23.29	-	-	-	A	137688259	G	A	137688259	3	1	240	1	0	0	0	0	1	0	0	0	3726	1291	45	2	2977	2	COL5A1	9	137688259	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	782985	137688259	3525172	2268	21118										
MRPS2	0	genome.wustl.edu	37	chr9	138395685	138395685	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcttcctgcacacgctCaacaacatctttgagccaca	4	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138395685	138395685	C	G	SNP	MRPS2	ENST00000241600	human	ensembl	69_37n	1	known	silent	c.597	p.L199	0.998	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	24	0	0	43	9	17.31	-	-	-	G	138395685	C	G	138395685	2	3	240	1	0	0	0	0	0	0	0	1	9903	813	29	2		2	MRPS2	9	138395685	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	707426	138395685	2817746	2269	21119										
OBP2A	0	genome.wustl.edu	37	chr9	138438623	138438623	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacggccttggcctgctccaGatcacagggacctggtacgt	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138438623	138438623	G	A	SNP	OBP2A	ENST00000340780	human	ensembl	69_37n	1	known	splice_site	c.73-1	e2-1	0.233	-	-	-	no_errors	OBP2A	HGNC	ENSG00000122136	43	0	0	43	27	38.57	-	-	-	A	138438623	G	A	138438623	5	1	240	1	0	0	0	0	0	0	1	0	10883	956	33	2	78	2	OBP2A	9	138438623	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42938	138438623	2774808	2270	21120										
KCNT1	0	genome.wustl.edu	37	chr9	138645813	138645813	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaagcagaactactccttCaatgactcgtcctccgagat	6	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138645813	138645813	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	silent	c.465	p.F155	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	38	0	0	38	12	24	-	-	-	T	138645813	C	T	138645813	2	4	240	1	0	0	0	0	0	0	0	1	8145	825	29	2		2	KCNT1	9	138645813	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	207190	138645813	2567618	2271	21121										
KCNT1	0	genome.wustl.edu	37	chr9	138683935	138683935	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgtggccagcagctcccaGagccggaagagcagctgcag	14	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138683935	138683935	G	C	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.3699	p.Q1233H	0.997	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	20	0	0	17	9	34.62	-	-	-	C	138683935	G	C	138683935	3	2	240	1	0	0	0	0	1	0	0	0	8145	933	33	2	3758	2	KCNT1	9	138683935	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38122	138683935	2529496	2272	21122										
CAMSAP1	0	genome.wustl.edu	37	chr9	138712932	138712932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgaggctcatctgctccGaaagaatgttggcatctttg	10	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138712932	138712932	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.3608	p.S1203L	0.003	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	31	0	0	53	7	11.67	-	-	-	A	138712932	G	A	138712932	3	1	240	1	0	0	0	0	1	0	0	0	2636	1059	37	1	1261	1	CAMSAP1	9	138712932	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	28997	138712932	2500499	2273	21123										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714090	138714090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacgctcccactcgccatgGagacactgctcatctgagag	9	15	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138714090	138714090	G	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.2450	p.S817Y	0.791	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	38	0	0	65	10	13.33	-	-	-	T	138714090	G	T	138714090	3	4	240	1	0	0	0	0	1	0	0	0	2636	1174	41	2	2419	2	CAMSAP1	9	138714090	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1158	138714090	2499341	2274	21124										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714305	138714305	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgagtcagaatcctgcctGaggagagtccacggctctga	12	12	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138714305	138714305	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.2235	p.L745	0.053	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	44	0	0	66	11	14.29	-	-	-	A	138714305	G	A	138714305	2	1	240	1	0	0	0	0	0	0	0	1	2636	1277	45	2		2	CAMSAP1	9	138714305	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	215	138714305	2499126	2275	21125										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714819	138714819	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaggcctaaggcccggggtGaggccctggggaactccggg	18	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138714819	138714819	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.1721	p.S574L	0.117	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	70	0	0	98	26	20.97	-	-	-	A	138714819	G	A	138714819	3	1	240	1	0	0	0	0	1	0	0	0	2636	1294	45	2	3148	2	CAMSAP1	9	138714819	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	514	138714819	2498612	2276	21126										
CAMSAP1	0	genome.wustl.edu	37	chr9	138754417	138754417	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaacaacgggaagtagggtGactgcctagcagaaaggtgc	14	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138754417	138754417	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.737	p.S246L	0.579	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	53	0	0	33	16	32.65	-	-	-	A	138754417	G	A	138754417	3	1	240	1	0	0	0	0	1	0	0	0	2636	1294	45	2	4156	2	CAMSAP1	9	138754417	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39598	138754417	2459014	2277	21127										
CAMSAP1	0	genome.wustl.edu	37	chr9	138774803	138774803	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctggtcccctttcaggatGaggctgcagacacggcagta	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	138774803	138774803	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	51	0	0	63	16	20.25	-	-	-	A	138774803	G	A	138774803	2	1	240	1	0	0	0	0	0	0	0	1	2636	1277	45	2		2	CAMSAP1	9	138774803	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	20386	138774803	2438628	2278	21128										
SDCCAG3	0	genome.wustl.edu	37	chr9	139301688	139301688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctaggactccctgccggaGaggccggagacacgcgagaa	15	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	139301688	139301688	G	A	SNP	SDCCAG3	ENST00000357365	human	ensembl	69_37n	-1	known	missense	c.728	p.S243F	0.412	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689	32	0	0	35	14	28.57	-	-	-	A	139301688	G	A	139301688	3	1	240	1	0	0	0	0	1	0	0	0	14046	942	33	2	603	2	SDCCAG3	9	139301688	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	526885	139301688	1911743	2279	21129										
NOTCH1	0	genome.wustl.edu	37	chr9	139401292	139401292	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctcacagcgctcacccacGaagcccggcgggcaggtgca	12	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	139401292	139401292	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	silent	c.3777	p.F1259	0.996	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	16	0	0	21	7	25	-	-	-	A	139401292	G	A	139401292	2	1	240	1	0	0	0	0	0	0	0	1	10619	1049	37	1		1	NOTCH1	9	139401292	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99604	139401292	1812139	2280	21130										
ENTPD2	0	genome.wustl.edu	37	chr9	139945809	139945809	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcacactggtcgaggcctCtggattggtcaggctgcaaa	14	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	139945809	139945809	C	G	SNP	ENTPD2	ENST00000355097	human	ensembl	69_37n	-1	known	missense	c.400	p.E134Q	0.748	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD2	HGNC	ENSG00000054179	42	0	0	44	38	46.34	-	-	-	G	139945809	C	G	139945809	3	3	240	1	0	0	0	0	1	0	0	0	5176	922	32	2	1111	2	ENTPD2	9	139945809	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	544517	139945809	1267622	2281	21131										
C9orf37	0	genome.wustl.edu	37	chr9	140510507	140510507	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgactgtggctaggtttgtCagttaccttatctataaaat	9	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	140510507	140510507	C	T	SNP	C9orf37	ENST00000371417	human	ensembl	69_37n	-1	known	missense	c.145	p.D49N	0.000	NULL	NULL	-	no_errors	C9orf37	HGNC	ENSG00000203993	66	0	0	49	32	39.51	-	-	-	T	140510507	C	T	140510507	3	4	240	1	0	0	0	0	1	0	0	0	2504	826	29	2	389	2	C9orf37	9	140510507	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	564698	140510507	702924	2282	21132										
EHMT1	0	genome.wustl.edu	37	chr9	140637876	140637876	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcggaagaaaaaacgaagaAtgggaacctatagcctggtt	11	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	9	140637876	140637876	A	G	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.877	p.M293V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	49	0	0	40	10	20	-	-	-	G	140637876	A	G	140637876	3	3	240	1	0	0	0	0	1	0	0	0	5018	101	4	5	895	5	EHMT1	9	140637876	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	127369	140637876	575555	2283	21133										
DIP2C	0	genome.wustl.edu	37	chr10	327255	327255	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctaccacgtagagggcatCatggcgctctgtggagtaat	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	327255	327255	C	G	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.4303	p.D1435H	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	75	0	0	35	17	32.69	-	-	-	G	327255	C	G	327255	3	3	240	1	0	0	0	0	1	0	0	0	4565	826	29	2	375	2	DIP2C	10	327255	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		327255	135207492	2284	21134										
IDI2	0	genome.wustl.edu	37	chr10	1065716	1065716	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcatgctctccccaaattCtgtctgattttgccttgtgg	7	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	1065716	1065716	C	T	SNP	IDI2	ENST00000277517	human	ensembl	69_37n	-1	known	missense	c.425	p.R142K	0.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI2	HGNC	ENSG00000148377	136	0	0	92	31	25.2	-	-	-	T	1065716	C	T	1065716	3	4	240	1	0	0	0	0	1	0	0	0	7554	913	32	2	262	2	IDI2	10	1065716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	738461	1065716	134469031	2285	21135										
PITRM1	0	genome.wustl.edu	37	chr10	3190235	3190235	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcaggtttcgatccaggcaGagagaggagaaaagcacacc	14	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	3190235	3190235	G	A	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	silent	c.2016	p.L672	1.000	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	126	0	0	105	36	25.53	-	-	-	A	3190235	G	A	3190235	2	1	240	1	0	0	0	0	0	0	0	1	12027	929	33	2		2	PITRM1	10	3190235	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2124519	3190235	132344512	2286	21136										
PITRM1	0	genome.wustl.edu	37	chr10	3202519	3202519	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaaattaccgtacgtgaaGaacctaaaattttaagggaa	9	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	3202519	3202519	G	C	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.795	p.F265L	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	92	0	0	65	23	26.14	-	-	-	C	3202519	G	C	3202519	3	2	240	1	0	0	0	0	1	0	0	0	12027	933	33	2	2398	2	PITRM1	10	3202519	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12284	3202519	132332228	2287	21137										
AKR1E2	0	genome.wustl.edu	37	chr10	4879734	4879734	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacagcttgagaggcttttGaataagcctgggttgaggtt	14	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	4879734	4879734	G	A	SNP	AKR1E2	ENST00000298375	human	ensembl	69_37n	1	known	silent	c.543	p.L181	0.976	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1E2	HGNC	ENSG00000165568	45	0	0	19	9	32.14	-	-	-	A	4879734	G	A	4879734	2	1	240	1	0	0	0	0	0	0	0	1	474	1281	45	2		2	AKR1E2	10	4879734	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1677215	4879734	130655013	2288	21138										
NET1	0	genome.wustl.edu	37	chr10	5496965	5496965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttgaagaaaggtgaatccGagtgccagtattacatcgac	10	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	5496965	5496965	G	A	SNP	NET1	ENST00000355029	human	ensembl	69_37n	1	known	missense	c.1081	p.E361K	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	NET1	HGNC	ENSG00000173848	42	0	0	39	15	27.78	-	-	-	A	5496965	G	A	5496965	3	1	240	1	0	0	0	0	1	0	0	0	10410	1059	37	1	1216	1	NET1	10	5496965	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	617231	5496965	130037782	2289	21139										
ANKRD16	0	genome.wustl.edu	37	chr10	5922263	5922263	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tataaaattaaacggtacctGatcgatttttttcatcttta	4	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	5922263	5922263	G	C	SNP	ANKRD16	ENST00000380092	human	ensembl	69_37n	-1	known	nonsense	c.926	p.S309*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD16	HGNC	ENSG00000134461	107	0	0	81	30	27.03	-	-	-	C	5922263	G	C	5922263	4	2	240	1	0	0	0	0	0	1	0	0	645	1294	45	2	167	2	ANKRD16	10	5922263	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	425298	5922263	129612484	2290	21140										
PRKCQ	0	genome.wustl.edu	37	chr10	6540497	6540497	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaaagaagccttccgtctCaaattcattcatgtcctttg	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	6540497	6540497	C	G	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.403	p.E135Q	1.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	140	0	0	108	37	25.52	-	-	-	G	6540497	C	G	6540497	3	3	240	1	0	0	0	0	1	0	0	0	12596	835	29	2	1773	2	PRKCQ	10	6540497	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	618234	6540497	128994250	2291	21141										
SFMBT2	0	genome.wustl.edu	37	chr10	7212905	7212905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtacctgctcctgaaatatCttggccaagggggcacagtc	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	7212905	7212905	C	G	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.2529	p.K843N	1.000	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	94	0	0	79	17	17.71	-	-	-	G	7212905	C	G	7212905	3	3	240	1	0	0	0	0	1	0	0	0	14246	912	32	2	163	2	SFMBT2	10	7212905	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	672408	7212905	128321842	2292	21142										
KIN	0	genome.wustl.edu	37	chr10	7825107	7825107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaatagttgtctctgatgaGattcggacatacaatgacac	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	7825107	7825107	G	C	SNP	KIN	ENST00000379562	human	ensembl	69_37n	-1	known	missense	c.146	p.S49C	1.000	NULL	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657	75	0	0	47	14	22.95	-	-	-	C	7825107	G	C	7825107	3	2	240	1	0	0	0	0	1	0	0	0	8368	942	33	2	1083	2	KIN	10	7825107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	612202	7825107	127709640	2293	21143										
TAF3	0	genome.wustl.edu	37	chr10	7860723	7860723	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggtctcggtggcgcagatCtgccaggcgctgggctggga	19	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	7860723	7860723	C	A	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	silent	c.51	p.I17	1.000	pfam_BTP,superfamily_Histone-fold,smart_BTP	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	37	0	0	16	4	20	-	-	-	A	7860723	C	A	7860723	2	1	240	1	0	0	0	0	0	0	0	1	15617	903	32	2		2	TAF3	10	7860723	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	35616	7860723	127674024	2294	21144										
USP6NL	0	genome.wustl.edu	37	chr10	11505281	11505281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcacgttgtcgtactgcGatgcagtggagccccgcttc	13	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	11505281	11505281	G	A	SNP	USP6NL	ENST00000277575	human	ensembl	69_37n	-1	known	missense	c.1697	p.S566L	0.998	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429	33	0	0	34	6	15	-	-	-	A	11505281	G	A	11505281	3	1	240	1	0	0	0	0	1	0	0	0	17184	1059	37	1	844	1	USP6NL	10	11505281	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3644558	11505281	124029466	2295	21145										
USP6NL	0	genome.wustl.edu	37	chr10	11527872	11527872	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattttttcatgatgttcttGaaacctcaagagtttaggaa	7	5	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	11527872	11527872	G	C	SNP	USP6NL	ENST00000277575	human	ensembl	69_37n	-1	known	missense	c.754	p.Q252E	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429	123	0	0	93	26	21.85	-	-	-	C	11527872	G	C	11527872	3	2	240	1	0	0	0	0	1	0	0	0	17184	1299	45	2	1803	2	USP6NL	10	11527872	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22591	11527872	124006875	2296	21146										
UPF2	0	genome.wustl.edu	37	chr10	12039691	12039691	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgtctaggaactatgaaGagtgcccgtaccaacttctt	8	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	12039691	12039691	G	A	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	silent	c.1824	p.L608	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	286	0	0	169	51	23.18	-	-	-	A	12039691	G	A	12039691	2	1	240	1	0	0	0	0	0	0	0	1	17101	929	33	2		2	UPF2	10	12039691	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	511819	12039691	123495056	2297	21147										
UPF2	0	genome.wustl.edu	37	chr10	12046574	12046574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttattctgacaacttttttCattgtctttaaacaagatgg	5	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	12046574	12046574	C	G	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	missense	c.1459	p.E487Q	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	169	0	0	80	33	29.2	-	-	-	G	12046574	C	G	12046574	3	3	240	1	0	0	0	0	1	0	0	0	17101	835	29	2	2431	2	UPF2	10	12046574	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6883	12046574	123488173	2298	21148										
SEC61A2	0	genome.wustl.edu	37	chr10	12191594	12191594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctctccccttcctttccagGaactttaatggaattgggta	7	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	12191594	12191594	G	A	SNP	SEC61A2	ENST00000298428	human	ensembl	69_37n	1	known	missense	c.221	p.G74E	1.000	pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A2	HGNC	ENSG00000065665	75	0	0	62	15	19.48	-	-	-	A	12191594	G	A	12191594	3	1	240	1	0	0	0	0	1	0	0	0	14089	1188	41	2	239	2	SEC61A2	10	12191594	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145020	12191594	123343153	2299	21149										
CCDC3	0	genome.wustl.edu	37	chr10	12940514	12940514	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtttctggttcgccagctCcaggtggcggcccttcttac	12	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	12940514	12940514	C	A	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	nonsense	c.715	p.E239*	1.000	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	21	0	0	26	7	21.21	-	-	-	A	12940514	C	A	12940514	4	1	240	1	0	0	0	0	0	1	0	0	2830	864	30	2	101	2	CCDC3	10	12940514	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	748920	12940514	122594233	2300	21150										
MCM10	0	genome.wustl.edu	37	chr10	13234536	13234536	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcagcggatgttggagatGaggagaaggaaatcagaaga	16	3	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	13234536	13234536	G	A	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.1716	p.M572I	0.576	pfam_Rep_factor_Mcm10	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	98	0	0	77	17	18.09	-	-	-	A	13234536	G	A	13234536	3	1	240	1	0	0	0	0	1	0	0	0	9456	1290	45	2	1762	2	MCM10	10	13234536	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	294022	13234536	122300211	2301	21151										
SEPHS1	0	genome.wustl.edu	37	chr10	13386934	13386934	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtaactttccgggttaaagGactcccgcgtagacatggtt	11	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	13386934	13386934	G	C	SNP	SEPHS1	ENST00000327347	human	ensembl	69_37n	-1	known	missense	c.17	p.S6C	1.000	NULL	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475	85	0	0	51	14	21.54	-	-	-	C	13386934	G	C	13386934	3	2	240	1	0	0	0	0	1	0	0	0	14142	1174	41	2	1193	2	SEPHS1	10	13386934	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	152398	13386934	122147813	2302	21152										
ITGA8	0	genome.wustl.edu	37	chr10	15559177	15559177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatgcctcaggggtcttgtCatttgtcagctgttccctgt	10	11	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	15559177	15559177	C	G	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.3172	p.D1058H	0.187	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	108	0	0	48	19	28.36	-	-	-	G	15559177	C	G	15559177	3	3	240	1	0	0	0	0	1	0	0	0	7936	826	29	2	23	2	ITGA8	10	15559177	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2172243	15559177	119975570	2303	21153										
ITGA8	0	genome.wustl.edu	37	chr10	15647745	15647745	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctagccgacagcttcaagtCaggaacacacagattgtctt	8	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	15647745	15647745	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.1948	p.D650Y	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	62	0	0	63	18	22.22	-	-	-	A	15647745	C	A	15647745	3	1	240	1	0	0	0	0	1	0	0	0	7936	826	29	2	1291	2	ITGA8	10	15647745	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	88568	15647745	119887002	2304	21154										
CUBN	0	genome.wustl.edu	37	chr10	16870915	16870915	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctgatgaagtagaagttGatggtgacaagccttccagc	12	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	16870915	16870915	G	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.10653	p.I3551M	0.998	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	98	0	0	64	25	28.09	-	-	-	C	16870915	G	C	16870915	3	2	240	1	0	0	0	0	1	0	0	0	4082	1280	45	2	226	2	CUBN	10	16870915	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1223170	16870915	118663832	2305	21155										
CUBN	0	genome.wustl.edu	37	chr10	16957859	16957859	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatctccacgaagtctttttCacagccagaagaattctgaa	7	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	16957859	16957859	C	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	nonsense	c.7171	p.E2391*	0.035	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	116	0	0	85	21	19.81	-	-	-	A	16957859	C	A	16957859	4	1	240	1	0	0	0	0	0	1	0	0	4082	835	29	2	3788	2	CUBN	10	16957859	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86944	16957859	118576888	2306	21156										
CUBN	0	genome.wustl.edu	37	chr10	16960708	16960708	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacctctcctgaggaccactGactgctgggcaaagatgtcc	10	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	16960708	16960708	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	nonsense	c.6913	p.Q2305*	0.058	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	84	0	0	70	30	30	-	-	-	A	16960708	G	A	16960708	4	1	240	1	0	0	0	0	0	1	0	0	4082	1299	45	2	4050	2	CUBN	10	16960708	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2849	16960708	118574039	2307	21157										
CUBN	0	genome.wustl.edu	37	chr10	16967398	16967398	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggggtcccaagggtggaGaacagatatcaggaccattt	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	16967398	16967398	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.6488	p.S2163F	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	51	0	0	40	15	27.27	-	-	-	A	16967398	G	A	16967398	3	1	240	1	0	0	0	0	1	0	0	0	4082	942	33	2	4483	2	CUBN	10	16967398	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6690	16967398	118567349	2308	21158										
VIM	0	genome.wustl.edu	37	chr10	17275622	17275622	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctggcacgtcttgaccttGaacgcaaagtggaatctttg	10	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	17275622	17275622	G	A	SNP	VIM	ENST00000224237	human	ensembl	69_37n	1	known	missense	c.661	p.E221K	1.000	pfam_F	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025	76	0	0	54	9	14.29	-	-	-	A	17275622	G	A	17275622	3	1	240	1	0	0	0	0	1	0	0	0	17263	1291	45	2	671	2	VIM	10	17275622	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	308224	17275622	118259125	2309	21159										
MLLT10	0	genome.wustl.edu	37	chr10	22021986	22021986	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcaaatcctagtccgtctCatcaaatacacacattttca	3	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	22021986	22021986	C	A	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.2377	p.H793N	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	100	0	0	95	25	20.83	-	-	-	A	22021986	C	A	22021986	3	1	240	1	0	0	0	0	1	0	0	0	9697	826	29	2	2495	2	MLLT10	10	22021986	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4746364	22021986	113512761	2310	21160										
SPAG6	0	genome.wustl.edu	37	chr10	22678134	22678134	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggggttgctgccgtgattGactgcattgggtcctgcaaa	15	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	22678134	22678134	G	T	SNP	SPAG6	ENST00000376603	human	ensembl	69_37n	1	known	missense	c.1126	p.D376Y	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	117	0	0	87	27	23.68	-	-	-	T	22678134	G	T	22678134	3	4	240	1	0	0	0	0	1	0	0	0	15073	1290	45	2	924	2	SPAG6	10	22678134	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	656148	22678134	112856613	2311	21161										
KIAA1217	0	genome.wustl.edu	37	chr10	24722000	24722000	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcacaagtgcagacacaatCcgtgctctcttcgtaagtgc	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	24722000	24722000	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.630	p.I210	1.000	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	70	0	0	53	13	19.7	-	-	-	T	24722000	C	T	24722000	2	4	240	1	0	0	0	0	0	0	0	1	8268	845	30	2		2	KIAA1217	10	24722000	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2043866	24722000	110812747	2312	21162										
KIAA1217	0	genome.wustl.edu	37	chr10	24822141	24822141	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggaagaagaagaagaagGagacaaaataatggcagaac	14	3	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	24822141	24822141	G	C	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	missense	c.3389	p.G1130A	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	35	0	0	49	13	20.97	-	-	-	C	24822141	G	C	24822141	3	2	240	1	0	0	0	0	1	0	0	0	8268	1174	41	2	3451	2	KIAA1217	10	24822141	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	100141	24822141	110712606	2313	21163										
KIAA1217	0	genome.wustl.edu	37	chr10	24835126	24835126	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccctccttctcctgcctCctccgtctcactgaatcaag	4	20	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	24835126	24835126	C	G	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	missense	c.5705	p.S1902C	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	116	0	0	115	26	18.44	-	-	-	G	24835126	C	G	24835126	3	3	240	1	0	0	0	0	1	0	0	0	8268	855	30	2	5787	2	KIAA1217	10	24835126	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12985	24835126	110699621	2314	21164										
ANKRD26	0	genome.wustl.edu	37	chr10	27382679	27382679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcattttctgtccaccaggaGagttactacttctggatgac	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	27382679	27382679	G	C	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.292	p.L98V	0.126	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	137	0	0	99	29	22.66	-	-	-	C	27382679	G	C	27382679	3	2	240	1	0	0	0	0	1	0	0	0	654	942	33	2	4972	2	ANKRD26	10	27382679	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2547553	27382679	108152068	2315	21165										
ACBD5	0	genome.wustl.edu	37	chr10	27524046	27524046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatcttccaataggatcccAaaatccaggccttgaaagtt	6	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	27524046	27524046	A	G	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	missense	c.271	p.W91R	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	78	0	0	62	9	12.68	-	-	-	G	27524046	A	G	27524046	3	3	240	1	0	0	0	0	1	0	0	0	125	130	5	5	1344	5	ACBD5	10	27524046	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	141367	27524046	108010701	2316	21166										
SVIL	0	genome.wustl.edu	37	chr10	29747482	29747482	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagagcttggctaagacgtCttccacgagggtgatctgat	12	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	29747482	29747482	C	G	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.6439	p.D2147H	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	40	0	0	30	5	14.29	-	-	-	G	29747482	C	G	29747482	3	3	240	1	0	0	0	0	1	0	0	0	15512	913	32	2	213	2	SVIL	10	29747482	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2223436	29747482	105787265	2317	21167										
KIAA1462	0	genome.wustl.edu	37	chr10	30318731	30318731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttgccgtcctcttctccGgtaggcttggtcgttaccag	10	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	30318731	30318731	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.346	p.R116W	0.019	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	31	0	0	47	25	34.72	-	-	-	A	30318731	G	A	30318731	3	1	240	1	0	0	0	0	1	0	0	0	8286	1115	39	1	3741	1	KIAA1462	10	30318731	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	571249	30318731	105216016	2318	21168										
NRP1	0	genome.wustl.edu	37	chr10	33496503	33496503	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagatcataattaccttCcacttcacagcccagcagct	6	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	33496503	33496503	C	T	SNP	NRP1	ENST00000431894	human	ensembl	69_37n	-1	known	nonsense	c.51	p.W17*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRP1	HGNC	ENSG00000099250	52	0	0	62	20	24.1	-	-	-	T	33496503	C	T	33496503	4	4	240	1	0	0	0	0	0	1	0	0	10733	864	30	2	1058	2	NRP1	10	33496503	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3177772	33496503	102038244	2319	21169										
PARD3	0	genome.wustl.edu	37	chr10	34649032	34649032	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccattaataatggacttGacaaagattcccaaatctgc	5	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	34649032	34649032	G	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	silent	c.1863	p.V621	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	91	0	0	65	21	24.42	-	-	-	C	34649032	G	C	34649032	2	2	240	1	0	0	0	0	0	0	0	1	11516	1277	45	2		2	PARD3	10	34649032	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1152529	34649032	100885715	2320	21170										
PARD3	0	genome.wustl.edu	37	chr10	34759098	34759098	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgtgtgggatttttccttGaaggctcttcagaggaaaaa	12	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	34759098	34759098	G	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	nonsense	c.497	p.S166*	0.999	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	82	0	0	50	16	24.24	-	-	-	C	34759098	G	C	34759098	4	2	240	1	0	0	0	0	0	1	0	0	11516	1294	45	2	3696	2	PARD3	10	34759098	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	110066	34759098	100775649	2321	21171										
GJD4	0	genome.wustl.edu	37	chr10	35894523	35894523	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtggacttgctagggtttCtcatcatcacattaaactgc	9	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	35894523	35894523	C	G	SNP	GJD4	ENST00000321660	human	ensembl	69_37n	1	known	missense	c.28	p.L10V	1.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD4	HGNC	ENSG00000177291	120	0	0	81	36	30.77	-	-	-	G	35894523	C	G	35894523	3	3	240	1	0	0	0	0	1	0	0	0	6471	913	32	2	30	2	GJD4	10	35894523	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1135425	35894523	99640224	2322	21172										
ZNF485	0	genome.wustl.edu	37	chr10	44112175	44112175	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttcagaaagaactcaatCcttttaagtcatcagagaat	5	8	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	44112175	44112175	C	G	SNP	ZNF485	ENST00000361807	human	ensembl	69_37n	1	known	missense	c.684	p.I228M	0.106	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	66	0	0	19	10	34.48	-	-	-	G	44112175	C	G	44112175	3	3	240	1	0	0	0	0	1	0	0	0	18034	845	30	2	698	2	ZNF485	10	44112175	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8217652	44112175	91422572	2323	21173										
RASSF4	0	genome.wustl.edu	37	chr10	45478085	45478085	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctcccctccacctcatgGatgcccagacggcctagctg	8	19	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	45478085	45478085	G	A	SNP	RASSF4	ENST00000334940	human	ensembl	69_37n	1	known	nonsense	c.201	p.W67*	0.864	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF4	HGNC	ENSG00000107551	39	0	0	30	6	16.67	-	-	-	A	45478085	G	A	45478085	4	1	240	1	0	0	0	0	0	1	0	0	13171	1183	41	2	265	2	RASSF4	10	45478085	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1365910	45478085	90056662	2324	21174										
CHAT	0	genome.wustl.edu	37	chr10	50835719	50835719	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggatctgttcactcagttGagaaagatagtcaaaatggc	12	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	50835719	50835719	G	C	SNP	CHAT	ENST00000337653	human	ensembl	69_37n	1	known	missense	c.999	p.L333F	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748	60	0	0	42	23	35.38	-	-	-	C	50835719	G	C	50835719	3	2	240	1	0	0	0	0	1	0	0	0	3342	1281	45	2	1069	2	CHAT	10	50835719	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5357634	50835719	84699028	2325	21175										
BICC1	0	genome.wustl.edu	37	chr10	60560010	60560010	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacttggagaaaaagtgctGagtgcaaatcacggggatcc	12	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	60560010	60560010	G	A	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	silent	c.1782	p.L594	0.962	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	45	0	0	27	7	20.59	-	-	-	A	60560010	G	A	60560010	2	1	240	1	0	0	0	0	0	0	0	1	1432	1277	45	2		2	BICC1	10	60560010	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9724291	60560010	74974737	2326	21176										
MYPN	0	genome.wustl.edu	37	chr10	69918267	69918267	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaaaatttgtcagcttctGagggtcagctggttgtcttt	10	7	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	69918267	69918267	G	C	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	missense	c.1342	p.E448Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	157	0	0	65	33	33.67	-	-	-	C	69918267	G	C	69918267	3	2	240	1	0	0	0	0	1	0	0	0	10170	1291	45	2	1364	2	MYPN	10	69918267	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9358257	69918267	65616480	2327	21177										
MYPN	0	genome.wustl.edu	37	chr10	69955271	69955271	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattcgcagtcggctaacctCtgctggtcagtctcacaggt	10	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	69955271	69955271	C	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	missense	c.3140	p.S1047F	0.010	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	64	0	0	45	17	27.42	-	-	-	T	69955271	C	T	69955271	3	4	240	1	0	0	0	0	1	0	0	0	10170	913	32	2	3194	2	MYPN	10	69955271	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37004	69955271	65579476	2328	21178										
RUFY2	0	genome.wustl.edu	37	chr10	70138408	70138408	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgcaattgtcctagtttGagttaacaaatcgttgtcac	7	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	70138408	70138408	G	C	SNP	RUFY2	ENST00000399200	human	ensembl	69_37n	-1	known	missense	c.1123	p.Q375E	1.000	NULL	pfam_Run	-	no_errors	RUFY2	HGNC	ENSG00000204130	92	0	0	58	23	28.4	-	-	-	C	70138408	G	C	70138408	3	2	240	1	0	0	0	0	1	0	0	0	13825	1299	45	2	732	2	RUFY2	10	70138408	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	183137	70138408	65396339	2329	21179										
DNA2	0	genome.wustl.edu	37	chr10	70176510	70176510	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcagcttctccaaaggagGatagcaatttagtgagggca	12	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	70176510	70176510	G	C	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.3328	p.P1110A	0.924	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	82	0	0	37	12	24.49	-	-	-	C	70176510	G	C	70176510	3	2	240	1	0	0	0	0	1	0	0	0	4632	1174	41	2	120	2	DNA2	10	70176510	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38102	70176510	65358237	2330	21180										
DNA2	0	genome.wustl.edu	37	chr10	70179628	70179628	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgctcacaccacctttttCaacttgttctggcgctggaa	7	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	70179628	70179628	C	G	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.2977	p.E993Q	1.000	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	116	0	0	58	18	23.38	-	-	-	G	70179628	C	G	70179628	3	3	240	1	0	0	0	0	1	0	0	0	4632	835	29	2	479	2	DNA2	10	70179628	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3118	70179628	65355119	2331	21181										
AIFM2	0	genome.wustl.edu	37	chr10	71874793	71874793	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtcctcacgtcggcacagtCaccaatggcgtagacgttgc	11	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	71874793	71874793	C	T	SNP	AIFM2	ENST00000307864	human	ensembl	69_37n	-1	known	missense	c.853	p.D285N	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286	32	0	0	22	16	42.11	-	-	-	T	71874793	C	T	71874793	3	4	240	1	0	0	0	0	1	0	0	0	427	826	29	2	276	2	AIFM2	10	71874793	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1695165	71874793	63659954	2332	21182										
ADAMTS14	0	genome.wustl.edu	37	chr10	72496438	72496438	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattcccttgccatgcagttCaggacctttgagccctgcaa	8	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	72496438	72496438	C	G	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.1497	p.F499L	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	52	0	0	35	15	29.41	-	-	-	G	72496438	C	G	72496438	3	3	240	1	0	0	0	0	1	0	0	0	259	825	29	2	1535	2	ADAMTS14	10	72496438	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	621645	72496438	63038309	2333	21183										
PCBD1	0	genome.wustl.edu	37	chr10	72645666	72645666	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtccctctcctcagcgctCagcctgtgtgctttgccagc	10	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	72645666	72645666	C	T	SNP	PCBD1	ENST00000299299	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	0.170	pfam_Trans/pterin_deHydtase,superfamily_Trans/pterin_deHydtase	pfam_Trans/pterin_deHydtase,superfamily_Trans/pterin_deHydtase	-	no_errors	PCBD1	HGNC	ENSG00000166228	58	0	0	45	11	19.64	-	-	-	T	72645666	C	T	72645666	2	4	240	1	0	0	0	0	0	0	0	1	11571	813	29	2		2	PCBD1	10	72645666	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	149228	72645666	62889081	2334	21184										
SLC29A3	0	genome.wustl.edu	37	chr10	73115968	73115968	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcgtgctctgcatgggactCtacctgctgctgtccaggct	11	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	73115968	73115968	C	T	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	1	known	silent	c.741	p.L247	0.924	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	72	0	0	44	13	22.81	-	-	-	T	73115968	C	T	73115968	2	4	240	1	0	0	0	0	0	0	0	1	14625	900	32	2		2	SLC29A3	10	73115968	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	470302	73115968	62418779	2335	21185										
CDH23	0	genome.wustl.edu	37	chr10	73483820	73483820	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgaaagccacggacgcaGatgagggcgagtttgggcgt	17	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	73483820	73483820	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.3397	p.D1133N	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	75	0	0	82	28	25.45	-	-	-	A	73483820	G	A	73483820	3	1	240	1	0	0	0	0	1	0	0	0	3137	942	33	2	3805	2	CDH23	10	73483820	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	367852	73483820	62050927	2336	21186										
DNAJC9	0	genome.wustl.edu	37	chr10	75006556	75006556	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgctctctgttctctgtCactgagaacggaatagactt	8	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	75006556	75006556	C	T	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.211	p.D71N	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	90	0	0	41	23	35.94	-	-	-	T	75006556	C	T	75006556	3	4	240	1	0	0	0	0	1	0	0	0	4691	826	29	2	587	2	DNAJC9	10	75006556	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1522736	75006556	60528191	2337	21187										
ANXA7	0	genome.wustl.edu	37	chr10	75147489	75147489	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgctttaattttttgcctCtgatcattggaacggttggc	10	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	75147489	75147489	C	T	SNP	ANXA7	ENST00000372919	human	ensembl	69_37n	-1	known	silent	c.657	p.Q219	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVII,prints_AnnexinIV	-	no_errors	ANXA7	HGNC	ENSG00000138279	191	0	0	76	44	36.67	-	-	-	T	75147489	C	T	75147489	2	4	240	1	0	0	0	0	0	0	0	1	722	912	32	2		2	ANXA7	10	75147489	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140933	75147489	60387258	2338	21188										
C10orf55	0	genome.wustl.edu	37	chr10	75671527	75671527	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggtggcagcggaggcttGagaaccacgggggttggcac	19	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	75671527	75671527	G	C	SNP	C10orf55	ENST00000409178	human	ensembl	69_37n	-1	known	silent	c.372	p.L124	0.001	NULL	NULL	-	no_errors	C10orf55	HGNC	ENSG00000222047	46	0	0	26	11	29.73	-	-	-	C	75671527	G	C	75671527	2	2	240	1	0	0	0	0	0	0	0	1	1618	1277	45	2		2	C10orf55	10	75671527	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	524038	75671527	59863220	2339	21189										
DUPD1	0	genome.wustl.edu	37	chr10	76803733	76803733	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgcgttcagcacgtgcgtGaaccccgccttctgcagcct	11	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	76803733	76803733	G	A	SNP	DUPD1	ENST00000338487	human	ensembl	69_37n	-1	known	silent	c.243	p.F81	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUPD1	HGNC	ENSG00000188716	33	0	0	15	7	31.82	-	-	-	A	76803733	G	A	76803733	2	1	240	1	0	0	0	0	0	0	0	1	4839	1281	45	2		2	DUPD1	10	76803733	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1132206	76803733	58731014	2340	21190										
KCNMA1	0	genome.wustl.edu	37	chr10	78651293	78651293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggactcacccctaagtccGcaaatggcccatcgagcaga	10	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	78651293	78651293	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.3344	p.A1115V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	38	0	0	15	13	46.43	-	-	-	A	78651293	G	A	78651293	3	1	240	1	0	0	0	0	1	0	0	0	8127	1087	38	1	419	1	KCNMA1	10	78651293	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1847560	78651293	56883454	2341	21191										
DLG5	0	genome.wustl.edu	37	chr10	79581386	79581386	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaggcactgccgtggagctGagcatggccttgggccaggt	16	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	79581386	79581386	G	C	SNP	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	silent	c.2856	p.L952	0.988	NULL	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	14	0	0	4	4	50	-	-	-	C	79581386	G	C	79581386	2	2	240	1	0	0	0	0	0	0	0	1	4594	1277	45	2		2	DLG5	10	79581386	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	930093	79581386	55953361	2342	21192										
TSPAN14	0	genome.wustl.edu	37	chr10	82277672	82277672	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtttcagatatttggcatCttcctggcaaggacgctgat	11	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	82277672	82277672	C	T	SNP	TSPAN14	ENST00000372156	human	ensembl	69_37n	1	known	silent	c.753	p.I251	0.999	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN14	HGNC	ENSG00000108219	38	0	0	27	21	43.75	-	-	-	T	82277672	C	T	82277672	2	4	240	1	0	0	0	0	0	0	0	1	16734	903	32	2		2	TSPAN14	10	82277672	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2696286	82277672	53257075	2343	21193										
NRG3	0	genome.wustl.edu	37	chr10	84744988	84744988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatccacaagggccagttCtgtgcccatcatcccttcag	7	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	84744988	84744988	C	T	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	missense	c.1790	p.S597F	0.998	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	58	0	0	34	12	26.09	-	-	-	T	84744988	C	T	84744988	3	4	240	1	0	0	0	0	1	0	0	0	10722	913	32	2	1996	2	NRG3	10	84744988	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2467316	84744988	50789759	2344	21194										
CDHR1	0	genome.wustl.edu	37	chr10	85961562	85961562	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgccccctaattcttataGaacctgcactccccatttgc	5	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	85961562	85961562	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	splice_site	c.526-1	e7-1	0.965	-	-	-	no_errors	CDHR1	HGNC	ENSG00000148600	57	0	0	33	12	26.67	-	-	-	A	85961562	G	A	85961562	5	1	240	1	0	0	0	0	0	0	1	0	3147	956	33	2	551	2	CDHR1	10	85961562	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1216574	85961562	49573185	2345	21195										
FAM190B	0	genome.wustl.edu	37	chr10	86131658	86131658	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaagtactcaatgggaatGaacatttggggtatggattt	12	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	86131658	86131658	G	T	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	nonsense	c.850	p.E284*	0.999	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	76	0	0	42	9	17.65	-	-	-	T	86131658	G	T	86131658	4	4	240	1	0	0	0	0	0	1	0	0	5564	1291	45	2	852	2	FAM190B	10	86131658	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	170096	86131658	49403089	2346	21196										
FAM190B	0	genome.wustl.edu	37	chr10	86133447	86133447	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagactacagagctggttCttcgtttgaactctctccat	7	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	86133447	86133447	C	T	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.1490	p.S497F	1.000	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	103	0	0	55	20	26.67	-	-	-	T	86133447	C	T	86133447	3	4	240	1	0	0	0	0	1	0	0	0	5564	913	32	2	1496	2	FAM190B	10	86133447	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1789	86133447	49401300	2347	21197										
GRID1	0	genome.wustl.edu	37	chr10	87362126	87362126	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgggggtcttcaccgggctCtgccggaacagccccccgtt	13	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	87362126	87362126	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	silent	c.2934	p.Q978	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	24	0	0	16	10	38.46	-	-	-	T	87362126	C	T	87362126	2	4	240	1	0	0	0	0	0	0	0	1	6822	912	32	2		2	GRID1	10	87362126	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1228679	87362126	48172621	2348	21198										
WAPAL	0	genome.wustl.edu	37	chr10	88213498	88213498	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctacatggttagttacattCtggtgaggcagaggcttact	11	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	88213498	88213498	C	G	SNP	WAPAL	ENST00000342368	human	ensembl	69_37n	-1	known	missense	c.3003	p.Q1001H	1.000	pfam_WAPL_prot,superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650	85	0	0	49	25	33.78	-	-	-	G	88213498	C	G	88213498	3	3	240	1	0	0	0	0	1	0	0	0	17345	912	32	2	852	2	WAPAL	10	88213498	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	851372	88213498	47321249	2349	21199										
MMRN2	0	genome.wustl.edu	37	chr10	88702195	88702195	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggtctttctgctgcttCttccctttcctgctcagcat	6	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	88702195	88702195	C	G	SNP	MMRN2	ENST00000372027	human	ensembl	69_37n	-1	known	missense	c.2346	p.K782N	0.879	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269	89	0	0	38	22	36.67	-	-	-	G	88702195	C	G	88702195	3	3	240	1	0	0	0	0	1	0	0	0	9743	912	32	2	511	2	MMRN2	10	88702195	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	488697	88702195	46832552	2350	21200										
GLUD1	0	genome.wustl.edu	37	chr10	88854358	88854358	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgtcctcgcggtcggccaCcgcctcgctgtagtggcgcc	14	17	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	88854358	88854358	C	A	SNP	GLUD1	ENST00000277865	human	ensembl	69_37n	-1	known	missense	c.169	p.V57L	1.000	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD1	HGNC	ENSG00000148672	18	0	0	3	4	57.14	-	-	-	A	88854358	C	A	88854358	3	1	240	1	0	0	0	0	1	0	0	0	6528	507	18	4	1559	4	GLUD1	10	88854358	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	152163	88854358	46680389	2351	21201										
LIPN	0	genome.wustl.edu	37	chr10	90521992	90521992	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagtgaagagtatgaagtCaccactgaagatgggtatat	11	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	90521992	90521992	C	T	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	silent	c.156	p.V52	0.254	pfam_AB_hydrolase_lipase	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	68	0	0	21	17	44.74	-	-	-	T	90521992	C	T	90521992	2	4	240	1	0	0	0	0	0	0	0	1	8884	813	29	2		2	LIPN	10	90521992	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1667634	90521992	45012755	2352	21202										
LIPN	0	genome.wustl.edu	37	chr10	90537882	90537882	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatactccctcaaatcaaGagtcttcattactttaagct	5	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	90537882	90537882	G	C	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.1080	p.K360N	0.222	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	83	0	0	50	27	35.06	-	-	-	C	90537882	G	C	90537882	3	2	240	1	0	0	0	0	1	0	0	0	8884	933	33	2	1114	2	LIPN	10	90537882	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15890	90537882	44996865	2353	21203										
IFIT1	0	genome.wustl.edu	37	chr10	91163445	91163445	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agactggctgctgactttgaGaactctgtgagacaaggtcc	12	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	91163445	91163445	G	C	SNP	IFIT1	ENST00000371804	human	ensembl	69_37n	1	known	missense	c.1413	p.E471D	0.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	29	0	0	8	7	46.67	-	-	-	C	91163445	G	C	91163445	3	2	240	1	0	0	0	0	1	0	0	0	7575	933	33	2	1419	2	IFIT1	10	91163445	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	625563	91163445	44371302	2354	21204										
KIF20B	0	genome.wustl.edu	37	chr10	91528502	91528502	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttgtttattaggttgccaTacgtccatcatctaagaaaa	6	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	91528502	91528502	T	A	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	missense	c.5189	p.I1730K	0.007	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	97	0	0	42	11	20.75	-	-	-	A	91528502	T	A	91528502	3	1	240	1	0	0	0	0	1	0	0	0	8339	1406	49	5	5097	5	KIF20B	10	91528502	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	365057	91528502	44006245	2355	21205										
ANKRD1	0	genome.wustl.edu	37	chr10	92672642	92672642	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagaatgtagctatgcgaGaggtcttgtaggagttctct	12	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	92672642	92672642	G	C	SNP	ANKRD1	ENST00000371697	human	ensembl	69_37n	-1	known	missense	c.941	p.S314C	0.604	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD1	HGNC	ENSG00000148677	171	0	0	71	36	33.64	-	-	-	C	92672642	G	C	92672642	3	2	240	1	0	0	0	0	1	0	0	0	637	942	33	2	22	2	ANKRD1	10	92672642	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1144140	92672642	42862105	2356	21206										
PCGF5	0	genome.wustl.edu	37	chr10	93011102	93011102	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaagaaggtgatgaaaatGaagatgataaagattatcac	10	2	1	8			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	93011102	93011102	G	A	SNP	PCGF5	ENST00000336126	human	ensembl	69_37n	1	known	missense	c.379	p.E127K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF5	HGNC	ENSG00000180628	89	0	0	45	21	31.82	-	-	-	A	93011102	G	A	93011102	3	1	240	1	0	0	0	0	1	0	0	0	11650	1291	45	2	397	2	PCGF5	10	93011102	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338460	93011102	42523645	2357	21207										
PPP1R3C	0	genome.wustl.edu	37	chr10	93390236	93390236	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgagggaaatctaaaatCaagtttttctcctcgtggtg	11	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	93390236	93390236	C	T	SNP	PPP1R3C	ENST00000238994	human	ensembl	69_37n	-1	known	silent	c.402	p.L134	1.000	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938	80	0	0	33	20	37.74	-	-	-	T	93390236	C	T	93390236	2	4	240	1	0	0	0	0	0	0	0	1	12450	825	29	2		2	PPP1R3C	10	93390236	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	379134	93390236	42144511	2358	21208										
KIF11	0	genome.wustl.edu	37	chr10	94396956	94396956	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagaatgtactcaagactGatcttctaagttcactggaa	7	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	94396956	94396956	G	A	SNP	KIF11	ENST00000260731	human	ensembl	69_37n	1	known	missense	c.1891	p.D631N	0.395	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160	90	0	0	53	31	36.9	-	-	-	A	94396956	G	A	94396956	3	1	240	1	0	0	0	0	1	0	0	0	8324	1290	45	2	1949	2	KIF11	10	94396956	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1006720	94396956	41137791	2359	21209										
EXOC6	0	genome.wustl.edu	37	chr10	94774009	94774009	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gataccctgcagctagcattCattgacctcagacaagtaag	8	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	94774009	94774009	C	G	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.2202	p.F734L	1.000	pfam_Sec15,pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	123	0	0	60	25	29.41	-	-	-	G	94774009	C	G	94774009	3	3	240	1	0	0	0	0	1	0	0	0	5344	825	29	2	2322	2	EXOC6	10	94774009	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	377053	94774009	40760738	2360	21210										
LGI1	0	genome.wustl.edu	37	chr10	95549886	95549886	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaacaatctccagacactCccaaaagatattttcaaagg	4	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	95549886	95549886	C	T	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	silent	c.462	p.L154	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	97	0	0	44	19	30.16	-	-	-	T	95549886	C	T	95549886	2	4	240	1	0	0	0	0	0	0	0	1	8806	842	30	2		2	LGI1	10	95549886	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	775877	95549886	39984861	2361	21211										
CYP2C9	0	genome.wustl.edu	37	chr10	96701682	96701682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccatagtggtgctgcatgGatatgaagcagtgaaggaag	14	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	96701682	96701682	G	A	SNP	CYP2C9	ENST00000260682	human	ensembl	69_37n	1	known	missense	c.236	p.G79E	0.998	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C9	HGNC	ENSG00000138109	301	1	0.33	170	78	31.45	-	-	-	A	96701682	G	A	96701682	3	1	240	1	0	0	0	0	1	0	0	0	4199	1174	41	2	242	2	CYP2C9	10	96701682	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1151796	96701682	38833065	2362	21212										
C10orf129	0	genome.wustl.edu	37	chr10	96988506	96988506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctggtggtctggtagagttGatgatgttgccaatgcattg	14	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	96988506	96988506	G	C	SNP	C10orf129	ENST00000341686	human	ensembl	69_37n	1	known	missense	c.1408	p.D470H	0.122	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	C10orf129	HGNC	ENSG00000173124	208	0	0	124	61	32.97	-	-	-	C	96988506	G	C	96988506	3	2	240	1	0	0	0	0	1	0	0	0	1603	1290	45	2	1446	2	C10orf129	10	96988506	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	286824	96988506	38546241	2363	21213										
SORBS1	0	genome.wustl.edu	37	chr10	97101164	97101164	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccttctcagcaggaggaaGaagctgagaaagggaaagag	15	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	97101164	97101164	G	C	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.2548	p.L850V	0.999	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	75	0	0	38	29	42.65	-	-	-	C	97101164	G	C	97101164	3	2	240	1	0	0	0	0	1	0	0	0	15016	942	33	2	1418	2	SORBS1	10	97101164	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	112658	97101164	38433583	2364	21214										
ALDH18A1	0	genome.wustl.edu	37	chr10	97402801	97402801	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggccacattcatcccctCgggtcaccacggcactgccg	9	19	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	97402801	97402801	C	G	SNP	ALDH18A1	ENST00000371224	human	ensembl	69_37n	-1	known	missense	c.251	p.R84P	1.000	pfam_Asp/Glu/Uridylate_kinase,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	40	0	0	30	15	33.33	-	-	-	G	97402801	C	G	97402801	3	3	240	1	0	0	0	0	1	0	0	0	489	884	31	3	2200	3	ALDH18A1	10	97402801	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	301637	97402801	38131946	2365	21215										
C10orf12	0	genome.wustl.edu	37	chr10	98742657	98742657	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaattccctgaggcctctGataggtgcctaagaagtcaa	9	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	98742657	98742657	G	C	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1510	p.D504H	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	22	0	0	13	5	27.78	-	-	-	C	98742657	G	C	98742657	3	2	240	1	0	0	0	0	1	0	0	0	1599	1290	45	2	1512	2	C10orf12	10	98742657	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1339856	98742657	36792090	2366	21216										
C10orf12	0	genome.wustl.edu	37	chr10	98743124	98743124	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaaagtattgcttgtaaGagggacccagaacaggcaaa	11	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	98743124	98743124	G	C	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1977	p.K659N	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	29	0	0	24	11	31.43	-	-	-	C	98743124	G	C	98743124	3	2	240	1	0	0	0	0	1	0	0	0	1599	933	33	2	1979	2	C10orf12	10	98743124	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	467	98743124	36791623	2367	21217										
MMS19	0	genome.wustl.edu	37	chr10	99219137	99219137	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accatggaagggctagagctGaggttcagaaacttggtgac	14	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	99219137	99219137	G	C	SNP	MMS19	ENST00000434538	human	ensembl	69_37n	-1	novel	nonsense	c.1589	p.S530*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MMS19	HGNC	ENSG00000155229	71	0	0	55	22	28.57	-	-	-	C	99219137	G	C	99219137	4	2	240	1	0	0	0	0	0	1	0	0	9744	1277	45	2	222	2	MMS19	10	99219137	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	476013	99219137	36315610	2368	21218										
CRTAC1	0	genome.wustl.edu	37	chr10	99655032	99655032	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgccacgggctccatctCacacaggtagcctgagcccc	11	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	99655032	99655032	C	G	SNP	CRTAC1	ENST00000370597	human	ensembl	69_37n	-1	known	missense	c.1456	p.E486Q	1.000	pfam_UnbV_ASPIC	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	-	no_errors	CRTAC1	HGNC	ENSG00000095713	34	0	0	22	6	21.43	-	-	-	G	99655032	C	G	99655032	3	3	240	1	0	0	0	0	1	0	0	0	3926	835	29	2	549	2	CRTAC1	10	99655032	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	435895	99655032	35879715	2369	21219										
PYROXD2	0	genome.wustl.edu	37	chr10	100154999	100154999	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggctccaatcactgcatCtgtggctagagtggctttta	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	100154999	100154999	C	T	SNP	PYROXD2	ENST00000370575	human	ensembl	69_37n	-1	known	missense	c.739	p.D247N	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943	47	0	0	37	16	30.19	-	-	-	T	100154999	C	T	100154999	3	4	240	1	0	0	0	0	1	0	0	0	12950	913	32	2	1042	2	PYROXD2	10	100154999	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	499967	100154999	35379748	2370	21220										
CNNM1	0	genome.wustl.edu	37	chr10	101090509	101090509	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacttcgccactgtctccgaGatcctgcgcagcggctacac	10	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	101090509	101090509	G	A	SNP	CNNM1	ENST00000356713	human	ensembl	69_37n	1	known	silent	c.1365	p.E455	1.000	NULL	pfam_DUF21,pfam_Cysta_beta_synth_core	-	no_errors	CNNM1	HGNC	ENSG00000119946	36	0	0	22	12	35.29	-	-	-	A	101090509	G	A	101090509	2	1	240	1	0	0	0	0	0	0	0	1	3642	933	33	2		2	CNNM1	10	101090509	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	935510	101090509	34444238	2371	21221										
ENTPD7	0	genome.wustl.edu	37	chr10	101458334	101458334	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagtcccgacaatccatttCtggatccctgcctgccagtg	9	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	101458334	101458334	C	G	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.1054	p.L352V	0.999	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	95	0	0	42	22	34.38	-	-	-	G	101458334	C	G	101458334	3	3	240	1	0	0	0	0	1	0	0	0	5181	912	32	2	1088	2	ENTPD7	10	101458334	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	367825	101458334	34076413	2372	21222										
DNMBP	0	genome.wustl.edu	37	chr10	101659737	101659737	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatccttctcgtagatttCaagcagcgcaatggcctcat	7	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	101659737	101659737	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.2641	p.E881K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	109	0	0	34	45	56.96	-	-	-	T	101659737	C	T	101659737	3	4	240	1	0	0	0	0	1	0	0	0	4709	835	29	2	2136	2	DNMBP	10	101659737	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	201403	101659737	33875010	2373	21223										
SEMA4G	0	genome.wustl.edu	37	chr10	102738999	102738999	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctcaagccgtacacacttCtatgcagccttcacgctgag	7	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	102738999	102738999	C	G	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.954	p.F318L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	37	0	0	28	9	24.32	-	-	-	G	102738999	C	G	102738999	3	3	240	1	0	0	0	0	1	0	0	0	14124	912	32	2	984	2	SEMA4G	10	102738999	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1079262	102738999	32795748	2374	21224										
C10orf2	0	genome.wustl.edu	37	chr10	102749553	102749553	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccgaggggcggctggaaGatcaactggacaaatatgat	14	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	102749553	102749553	G	A	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.1396	p.D466N	1.000	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	47	0	0	19	11	36.67	-	-	-	A	102749553	G	A	102749553	3	1	240	1	0	0	0	0	1	0	0	0	1607	942	33	2	1402	2	C10orf2	10	102749553	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10554	102749553	32785194	2375	21225										
C10orf76	0	genome.wustl.edu	37	chr10	103789437	103789437	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaaagcccatcagcatgttGataatgtcaaacccagaggt	8	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	103789437	103789437	G	C	SNP	C10orf76	ENST00000370033	human	ensembl	69_37n	-1	known	missense	c.372	p.I124M	1.000	superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	129	0	0	66	25	27.47	-	-	-	C	103789437	G	C	103789437	3	2	240	1	0	0	0	0	1	0	0	0	1626	1280	45	2	1785	2	C10orf76	10	103789437	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1039884	103789437	31745310	2376	21226										
PPRC1	0	genome.wustl.edu	37	chr10	103906590	103906590	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctgcagttcgcctccaaGaaggggtccatggccctagt	12	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	103906590	103906590	G	T	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	nonsense	c.3841	p.E1281*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	59	0	0	27	18	40	-	-	-	T	103906590	G	T	103906590	4	4	240	1	0	0	0	0	0	1	0	0	12487	943	33	2	3875	2	PPRC1	10	103906590	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	117153	103906590	31628157	2377	21227										
TRIM8	0	genome.wustl.edu	37	chr10	104404572	104404572	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccagaagccgggcctggaGaagaacctgaagctcaccaa	11	12	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	104404572	104404572	G	A	SNP	TRIM8	ENST00000302424	human	ensembl	69_37n	1	known	silent	c.198	p.E66	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRIM8	HGNC	ENSG00000171206	14	0	0	10	8	44.44	-	-	-	A	104404572	G	A	104404572	2	1	240	1	0	0	0	0	0	0	0	1	16644	933	33	2		2	TRIM8	10	104404572	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	497982	104404572	31130175	2378	21228										
CYP17A1	0	genome.wustl.edu	37	chr10	104592375	104592375	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagacggttacggtcactGatagttggtgtgcggctgaa	16	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	104592375	104592375	G	A	SNP	CYP17A1	ENST00000369887	human	ensembl	69_37n	-1	known	silent	c.1032	p.I344	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795	61	0	0	36	20	35.71	-	-	-	A	104592375	G	A	104592375	2	1	240	1	0	0	0	0	0	0	0	1	4178	1280	45	2		2	CYP17A1	10	104592375	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	187803	104592375	30942372	2379	21229										
AS3MT	0	genome.wustl.edu	37	chr10	104636765	104636765	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgagccttgaactgccagaaGaaatcaggacacacaaagtt	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	104636765	104636765	G	T	SNP	AS3MT	ENST00000369880	human	ensembl	69_37n	1	known	nonsense	c.583	p.E195*	0.993	NULL	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435	182	0	0	73	37	33.64	-	-	-	T	104636765	G	T	104636765	4	4	240	1	0	0	0	0	0	1	0	0	1009	943	33	2	609	2	AS3MT	10	104636765	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44390	104636765	30897982	2380	21230										
ITPRIP	0	genome.wustl.edu	37	chr10	106074281	106074281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtcttacggtaaaggcttCgctgcaggacgaagggccgg	16	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	106074281	106074281	C	T	SNP	ITPRIP	ENST00000278071	human	ensembl	69_37n	-1	known	missense	c.1529	p.R510Q	0.822	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841	25	0	0	10	9	47.37	-	-	-	T	106074281	C	T	106074281	3	4	240	1	0	0	0	0	1	0	0	0	7977	884	31	1	118	1	ITPRIP	10	106074281	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1437516	106074281	29460466	2381	21231										
CCDC147	0	genome.wustl.edu	37	chr10	106207522	106207522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctggacctgaggctgcgGaacagctgaagctgtaccga	14	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	106207522	106207522	G	A	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.2323	p.E775K	0.999	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	30	0	0	16	6	27.27	-	-	-	A	106207522	G	A	106207522	3	1	240	1	0	0	0	0	1	0	0	0	2806	1175	41	2	2385	2	CCDC147	10	106207522	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	133241	106207522	29327225	2382	21232										
SORCS1	0	genome.wustl.edu	37	chr10	108923816	108923816	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgctggtcagtctcagctCctccatccggaagcgggtgg	15	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	108923816	108923816	C	A	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	nonsense	c.469	p.E157*	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	35	0	0	26	7	21.21	-	-	-	A	108923816	C	A	108923816	4	1	240	1	0	0	0	0	0	1	0	0	15019	864	30	2	3375	2	SORCS1	10	108923816	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2716294	108923816	26610931	2383	21233										
PDCD4	0	genome.wustl.edu	37	chr10	112655727	112655727	+	Frame_Shift_Del	DEL	G	G	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttatgagagaatttacaatGaaattccggacattaatctg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	112655727	112655727	G	-	DEL	PDCD4	ENST00000280154	human	ensembl	69_37n	1	known	frame_shift_del	c.1231	p.E411fs	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593	116	0	0	39	22	35.48	-	-	-	-	112655727	G	-	112655727	7	5	240	1	0	1	0	1	0	0	0	0	11694	1291	45	0	1283	0	PDCD4	10	112655727	Frame_Shift_Del	DEL	G	TCGA-AC-A23H-01A-11D-A159-09	3731911	112655727	22879020	2384	21234										
SHOC2	0	genome.wustl.edu	37	chr10	112769570	112769570	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggagagaacctacttactCaccttcctgaagaaattggt	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	112769570	112769570	C	T	SNP	SHOC2	ENST00000369452	human	ensembl	69_37n	1	known	missense	c.1522	p.H508Y	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061	62	0	0	21	12	36.36	-	-	-	T	112769570	C	T	112769570	3	4	240	1	0	0	0	0	1	0	0	0	14376	826	29	2	1548	2	SHOC2	10	112769570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	113843	112769570	22765177	2385	21235										
TECTB	0	genome.wustl.edu	37	chr10	114045948	114045948	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccactccacctacttggtGaaccaggctgcctttgacca	7	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	114045948	114045948	G	A	SNP	TECTB	ENST00000369422	human	ensembl	69_37n	1	known	silent	c.387	p.V129	0.999	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TECTB	HGNC	ENSG00000119913	102	0	0	62	31	33.33	-	-	-	A	114045948	G	A	114045948	2	1	240	1	0	0	0	0	0	0	0	1	15843	1277	45	2		2	TECTB	10	114045948	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1276378	114045948	21488799	2386	21236										
ACSL5	0	genome.wustl.edu	37	chr10	114169397	114169397	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgatgacctgaagcaaaGaggggagaagagtggaattg	16	3	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	114169397	114169397	G	C	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	missense	c.833	p.R278T	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	73	0	0	29	8	21.62	-	-	-	C	114169397	G	C	114169397	3	2	240	1	0	0	0	0	1	0	0	0	180	942	33	2	859	2	ACSL5	10	114169397	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	123449	114169397	21365350	2387	21237										
TCF7L2	0	genome.wustl.edu	37	chr10	114724346	114724346	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccggcagcacacattactCtgcgtacaaaacgattgaac	8	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	114724346	114724346	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	69_37n	1	known	missense	c.413	p.S138F	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	99	0	0	67	15	18.29	-	-	-	T	114724346	C	T	114724346	3	4	240	1	0	0	0	0	1	0	0	0	15793	913	32	2	427	2	TCF7L2	10	114724346	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	554949	114724346	20810401	2388	21238										
DCLRE1A	0	genome.wustl.edu	37	chr10	115610362	115610362	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagtgtatctcttgtaatGaaaaggaatggttgaggtac	13	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	115610362	115610362	G	A	SNP	DCLRE1A	ENST00000361384	human	ensembl	69_37n	-1	known	missense	c.502	p.H168Y	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	33	0	0	12	4	25	-	-	-	A	115610362	G	A	115610362	3	1	240	1	0	0	0	0	1	0	0	0	4325	1290	45	2	2652	2	DCLRE1A	10	115610362	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	886016	115610362	19924385	2389	21239										
AFAP1L2	0	genome.wustl.edu	37	chr10	116060265	116060265	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggggtgggacctgggcctGagtctgccgggagggcctca	19	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	116060265	116060265	G	C	SNP	AFAP1L2	ENST00000545353	human	ensembl	69_37n	-1	known	nonsense	c.1886	p.S629*	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	52	0	0	41	15	26.79	-	-	-	C	116060265	G	C	116060265	4	2	240	1	0	0	0	0	0	1	0	0	355	1294	45	2	753	2	AFAP1L2	10	116060265	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	449903	116060265	19474482	2390	21240										
GFRA1	0	genome.wustl.edu	37	chr10	118029028	118029028	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcttacctgatatgaatggGaccacccggaatatatctga	9	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	118029028	118029028	G	C	SNP	GFRA1	ENST00000439649	human	ensembl	69_37n	-1	known	silent	c.405	p.V135	0.999	pirsf_Glial_neurotroph_fac_rcpt_a1/2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_A1	-	no_errors	GFRA1	HGNC	ENSG00000151892	118	0	0	46	25	35.21	-	-	-	C	118029028	G	C	118029028	2	2	240	1	0	0	0	0	0	0	0	1	6399	1161	41	2		2	GFRA1	10	118029028	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1968763	118029028	17505719	2391	21241										
FAM45A	0	genome.wustl.edu	37	chr10	120867647	120867647	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttttatatcacaacaattGaagttccagattcttccatt	5	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	120867647	120867647	G	A	SNP	FAM45A	ENST00000361432	human	ensembl	69_37n	1	known	missense	c.223	p.E75K	0.998	NULL	pfam_Secretory_pathway_prot_Avl9	-	no_errors	FAM45A	HGNC	ENSG00000119979	92	0	0	37	12	24.49	-	-	-	A	120867647	G	A	120867647	3	1	240	1	0	0	0	0	1	0	0	0	5610	1291	45	2	229	2	FAM45A	10	120867647	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2838619	120867647	14667100	2392	21242										
C10orf88	0	genome.wustl.edu	37	chr10	124697629	124697629	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatcatatgcttgtatccaGaattgcccaacaccgactga	6	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	124697629	124697629	G	A	SNP	C10orf88	ENST00000481909	human	ensembl	69_37n	-1	known	missense	c.695	p.S232F	0.284	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965	60	0	0	33	16	32.65	-	-	-	A	124697629	G	A	124697629	3	1	240	1	0	0	0	0	1	0	0	0	1632	942	33	2	650	2	C10orf88	10	124697629	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3829982	124697629	10837118	2393	21243										
C10orf88	0	genome.wustl.edu	37	chr10	124708295	124708295	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcaggagagcttgttgaaGaatttgcaaaaactgatctc	11	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	124708295	124708295	G	C	SNP	C10orf88	ENST00000481909	human	ensembl	69_37n	-1	known	missense	c.518	p.S173C	0.017	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965	86	0	0	54	20	27.03	-	-	-	C	124708295	G	C	124708295	3	2	240	1	0	0	0	0	1	0	0	0	1632	942	33	2	831	2	C10orf88	10	124708295	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10666	124708295	10826452	2394	21244										
BUB3	0	genome.wustl.edu	37	chr10	124921812	124921812	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtatttggacccaagccctGaggtacagaagaagaagtat	11	7	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	124921812	124921812	G	A	SNP	BUB3	ENST00000368865	human	ensembl	69_37n	1	known	missense	c.637	p.E213K	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BUB3	HGNC	ENSG00000154473	119	0	0	26	23	46.94	-	-	-	A	124921812	G	A	124921812	3	1	240	1	0	0	0	0	1	0	0	0	1581	1291	45	2	655	2	BUB3	10	124921812	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	213517	124921812	10612935	2395	21245										
FANK1	0	genome.wustl.edu	37	chr10	127697055	127697055	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggaaatcagagggtggcctCtcttctaattgatgctgggg	15	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	127697055	127697055	C	G	SNP	FANK1	ENST00000368693	human	ensembl	69_37n	1	known	missense	c.785	p.S262C	0.960	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	82	0	0	37	14	27.45	-	-	-	G	127697055	C	G	127697055	3	3	240	1	0	0	0	0	1	0	0	0	5718	913	32	2	815	2	FANK1	10	127697055	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2775243	127697055	7837692	2396	21246										
ADAM12	0	genome.wustl.edu	37	chr10	127797215	127797215	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcttaactttttccagatCttttccttgcctctgaaact	4	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	127797215	127797215	C	G	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.697	p.D233H	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	160	0	0	63	31	32.98	-	-	-	G	127797215	C	G	127797215	3	3	240	1	0	0	0	0	1	0	0	0	236	913	32	2	2204	2	ADAM12	10	127797215	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100160	127797215	7737532	2397	21247										
DOCK1	0	genome.wustl.edu	37	chr10	128795088	128795088	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattaactagcacgattagtCtcttcagagctcatgaaata	6	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	128795088	128795088	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.550	p.L184F	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	148	0	0	67	28	29.47	-	-	-	T	128795088	C	T	128795088	3	4	240	1	0	0	0	0	1	0	0	0	4719	913	32	2	576	2	DOCK1	10	128795088	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	997873	128795088	6739659	2398	21248										
MKI67	0	genome.wustl.edu	37	chr10	129900948	129900948	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attctttttgcagaagtcctCaaacttctcttcatgatgac	5	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	129900948	129900948	C	G	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.9156	p.L3052F	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	193	0	0	98	61	38.36	-	-	-	G	129900948	C	G	129900948	3	3	240	1	0	0	0	0	1	0	0	0	9669	825	29	2	626	2	MKI67	10	129900948	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1105860	129900948	5633799	2399	21249										
EBF3	0	genome.wustl.edu	37	chr10	131638628	131638628	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacattggcaggtgagaatGagaaaatgccgtgtgtgctg	15	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	131638628	131638628	G	A	SNP	EBF3	ENST00000355311	human	ensembl	69_37n	-1	known	missense	c.1640	p.S547L	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF3	HGNC	ENSG00000108001	29	0	0	12	6	33.33	-	-	-	A	131638628	G	A	131638628	3	1	240	1	0	0	0	0	1	0	0	0	4917	1305	45	2		2	EBF3	10	131638628	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1737680	131638628	3896119	2400	21250										
JAKMIP3	0	genome.wustl.edu	37	chr10	133976789	133976789	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaggtggctgagctgctgtCagaggaggagcgcgagaagc	18	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	133976789	133976789	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	69_37n	1	known	missense	c.2291	p.S764L	0.989	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	31	0	0	18	16	47.06	-	-	-	T	133976789	C	T	133976789	3	4	240	1	0	0	0	0	1	0	0	0	7996	838	29	2	2365	2	JAKMIP3	10	133976789	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2338161	133976789	1557958	2401	21251										
ZNF511	0	genome.wustl.edu	37	chr10	135165915	135165915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctcctgggaccggaggaaGaccaagaccacatctaccac	10	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	10	135165915	135165915	G	A	SNP	ZNF511	ENST00000368554	human	ensembl	69_37n	1	known	missense	c.904	p.D302N	0.991	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	14	0	0	11	4	26.67	-	-	-	A	135165915	G	A	135165915	3	1	240	1	0	0	0	0	1	0	0	0	18051	942	33	2		2	ZNF511	10	135165915	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1189126	135165915	368832	2402	21252										
ATHL1	0	genome.wustl.edu	37	chr11	294744	294744	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcactgtggaccctgcctctGaataatcaggaacggtggct	11	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	294744	294744	G	T	SNP	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	nonsense	c.2209	p.E737*	0.000	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	41	0	0	59	10	14.49	-	-	-	T	294744	G	T	294744	4	4	240	1	0	0	0	0	0	1	0	0	1108	1291	45	2	2259	2	ATHL1	11	294744	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		294744	134711772	2403	21253										
B4GALNT4	0	genome.wustl.edu	37	chr11	379938	379938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacgcgcgcaccggggactCgcgtttcagcgtcgtcctgg	15	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	379938	379938	C	T	SNP	B4GALNT4	ENST00000329962	human	ensembl	69_37n	1	known	missense	c.2561	p.S854L	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	32	0	0	26	15	36.59	-	-	-	T	379938	C	T	379938	3	4	240	1	0	0	0	0	1	0	0	0	1273	893	31	1	2623	1	B4GALNT4	11	379938	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	85194	379938	134626578	2404	21254										
DRD4	0	genome.wustl.edu	37	chr11	640489	640489	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgtgcccccgcggctggtCagcgccgtcacctggctggg	15	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	640489	640489	C	G	SNP	DRD4	ENST00000176183	human	ensembl	69_37n	1	known	silent	c.1146	p.V382	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_D4_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD4	HGNC	ENSG00000069696	27	0	0	15	6	28.57	-	-	-	G	640489	C	G	640489	2	3	240	1	0	0	0	0	0	0	0	1	4794	813	29	2		2	DRD4	11	640489	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	260551	640489	134366027	2405	21255										
CEND1	0	genome.wustl.edu	37	chr11	788566	788566	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgctggctgacttccctCtggactccatggtgggcggg	16	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	788566	788566	C	G	SNP	CEND1	ENST00000524587	human	ensembl	69_37n	-1	putative	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CEND1	HGNC	ENSG00000184524	43	0	0	33	19	36.54	-	-	-	G	788566	C	G	788566	5	3	240	1	0	0	0	0	0	0	1	0	3254	913	32	2	442	2	CEND1	11	788566	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148077	788566	134217950	2406	21256										
MUC6	0	genome.wustl.edu	37	chr11	1016002	1016002	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaccgcgaggtggtggactGagaggagaaggcaggggcgg	23	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	1016002	1016002	G	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	nonsense	c.6799	p.Q2267*	0.116	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	143	0	0	160	30	15.79	-	-	-	A	1016002	G	A	1016002	4	1	240	1	0	0	0	0	0	1	0	0	10052	1299	45	2	532	2	MUC6	11	1016002	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	227436	1016002	133990514	2407	21257										
MUC5B	0	genome.wustl.edu	37	chr11	1271766	1271766	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accatgtccacagccacaccCtcctccactccagagactgt	5	19	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	1271766	1271766	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.13665	p.P4555	0.120	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	189	0	0	230	46	16.61	-	-	-	G	1271766	C	G	1271766	2	3	240	1	0	0	0	0	0	0	0	1	10051	668	24	4		4	MUC5B	11	1271766	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	255764	1271766	133734750	2408	21258										
NAP1L4	0	genome.wustl.edu	37	chr11	2985975	2985975	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtttcaagattggttcatCatattcctaatcaaaaagag	7	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	2985975	2985975	C	G	SNP	NAP1L4	ENST00000380542	human	ensembl	69_37n	-1	known	missense	c.541	p.D181H	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L4	HGNC	ENSG00000205531	90	0	0	102	22	17.74	-	-	-	G	2985975	C	G	2985975	3	3	240	1	0	0	0	0	1	0	0	0	10231	826	29	2	618	2	NAP1L4	11	2985975	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1714209	2985975	132020541	2409	21259										
CARS	0	genome.wustl.edu	37	chr11	3037024	3037024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactcacactgaggctggttCcaggccctccgaccgggaat	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3037024	3037024	C	T	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	missense	c.1973	p.G658E	0.008	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	33	0	0	51	7	12.07	-	-	-	T	3037024	C	T	3037024	3	4	240	1	0	0	0	0	1	0	0	0	2682	855	30	2	558	2	CARS	11	3037024	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51049	3037024	131969492	2410	21260										
OSBPL5	0	genome.wustl.edu	37	chr11	3128582	3128582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgactggtcgctgccactctCcgtcttccggctatggtcct	10	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3128582	3128582	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	missense	c.970	p.E324K	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	98	0	0	68	22	24.44	-	-	-	T	3128582	C	T	3128582	3	4	240	1	0	0	0	0	1	0	0	0	11353	864	30	2	1725	2	OSBPL5	11	3128582	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	91558	3128582	131877934	2411	21261										
OSBPL5	0	genome.wustl.edu	37	chr11	3140805	3140805	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggaggcggccctgaagatCaggtagctgctgggcagggg	19	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3140805	3140805	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	silent	c.663	p.L221	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	68	0	0	83	14	14.43	-	-	-	T	3140805	C	T	3140805	2	4	240	1	0	0	0	0	0	0	0	1	11353	813	29	2		2	OSBPL5	11	3140805	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12223	3140805	131865711	2412	21262										
ZNF195	0	genome.wustl.edu	37	chr11	3381001	3381001	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagatgctgtcacattcctCacatttgaaaggtttccctc	7	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3381001	3381001	C	T	SNP	ZNF195	ENST00000399602	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413K	0.161	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF195	HGNC	ENSG00000005801	51	0	0	78	18	18.75	-	-	-	T	3381001	C	T	3381001	3	4	240	1	0	0	0	0	1	0	0	0	17854	835	29	2	656	2	ZNF195	11	3381001	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	240196	3381001	131625515	2413	21263										
NUP98	0	genome.wustl.edu	37	chr11	3700891	3700891	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgctctggaggtgccaggtCttccaagaaccccttcaggt	12	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3700891	3700891	C	T	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.4966	p.D1656N	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	61	0	0	56	9	13.85	-	-	-	T	3700891	C	T	3700891	3	4	240	1	0	0	0	0	1	0	0	0	10846	913	32	2	448	2	NUP98	11	3700891	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	319890	3700891	131305625	2414	21264										
NUP98	0	genome.wustl.edu	37	chr11	3774602	3774602	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccaggtgctggtttacttCcaaaaatactattcccactg	6	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3774602	3774602	C	T	SNP	NUP98	ENST00000527104	human	ensembl	69_37n	-1	novel	nonsense	c.69	p.W23*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	NUP98	HGNC	ENSG00000110713	68	0	0	78	13	14.29	-	-	-	T	3774602	C	T	3774602	4	4	240	1	0	0	0	0	0	1	0	0	10846	855	30	2	4304	2	NUP98	11	3774602	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	73711	3774602	131231914	2415	21265										
PGAP2	0	genome.wustl.edu	37	chr11	3845301	3845301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgccgcctcaacttcggCctcaatgtcgtggagaacct	9	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	3845301	3845301	C	A	SNP	PGAP2	ENST00000396993	human	ensembl	69_37n	1	known	missense	c.214	p.P72T	0.851	NULL	NULL	-	no_errors	PGAP2	HGNC	ENSG00000148985	73	0	0	95	11	10.19	-	-	-	A	3845301	C	A	3845301	3	1	240	1	0	0	0	0	1	0	0	0	11852	739	26	4	726	4	PGAP2	11	3845301	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70699	3845301	131161215	2416	21266										
OR52R1	0	genome.wustl.edu	37	chr11	4825279	4825279	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaccccagactccacagaaGaaaaggcatggatgaagaac	10	11	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	4825279	4825279	G	A	SNP	OR52R1	ENST00000380382	human	ensembl	69_37n	-1	known	missense	c.569	p.S190F	0.344	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937	77	0	0	94	27	22.31	-	-	-	A	4825279	G	A	4825279	3	1	240	1	0	0	0	0	1	0	0	0	11204	942	33	2	618	2	OR52R1	11	4825279	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	979978	4825279	130181237	2417	21267										
OR52R1	0	genome.wustl.edu	37	chr11	4825378	4825378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatcttaggttgagtggagGaggagaggaccaggtcagtg	17	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	4825378	4825378	G	T	SNP	OR52R1	ENST00000380382	human	ensembl	69_37n	-1	known	missense	c.470	p.S157Y	0.112	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937	105	0	0	106	20	15.87	-	-	-	T	4825378	G	T	4825378	3	4	240	1	0	0	0	0	1	0	0	0	11204	1174	41	2	717	2	OR52R1	11	4825378	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99	4825378	130181138	2418	21268										
OR52J3	0	genome.wustl.edu	37	chr11	5068502	5068502	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgctcatgttggagtcatCtgtgttttctatatcccttc	9	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	5068502	5068502	C	T	SNP	OR52J3	ENST00000380370	human	ensembl	69_37n	1	known	silent	c.747	p.I249	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52J3	HGNC	ENSG00000205495	201	0	0	183	35	16.06	-	-	-	T	5068502	C	T	5068502	2	4	240	1	0	0	0	0	0	0	0	1	11195	903	32	2		2	OR52J3	11	5068502	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	243124	5068502	129938014	2419	21269										
OR51B4	0	genome.wustl.edu	37	chr11	5322877	5322877	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaatggccagtgaatgaatGaaggattgggtgaaacaggc	14	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	5322877	5322877	G	A	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	silent	c.300	p.F100	0.678	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	94	0	0	67	60	47.24	-	-	-	A	5322877	G	A	5322877	2	1	240	1	0	0	0	0	0	0	0	1	11163	1281	45	2		2	OR51B4	11	5322877	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	254375	5322877	129683639	2420	21270										
OR52H1	0	genome.wustl.edu	37	chr11	5566226	5566226	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtatgatgcgtgtcctgcaGaaaggcaggcatgtcagcaa	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	5566226	5566226	G	C	SNP	OR52H1	ENST00000322653	human	ensembl	69_37n	-1	known	missense	c.528	p.F176L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52H1	HGNC	ENSG00000181616	37	0	0	62	11	15.07	-	-	-	C	5566226	G	C	5566226	3	2	240	1	0	0	0	0	1	0	0	0	11192	933	33	2	437	2	OR52H1	11	5566226	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	243349	5566226	129440290	2421	21271										
TRIM6	0	genome.wustl.edu	37	chr11	5632299	5632299	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactccaggtatcagcctcaGagtggatactgggtgattgg	13	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	5632299	5632299	G	C	SNP	TRIM6	ENST00000380097	human	ensembl	69_37n	1	known	missense	c.1278	p.Q426H	0.002	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6	HGNC	ENSG00000121236	105	0	0	111	13	10.48	-	-	-	C	5632299	G	C	5632299	3	2	240	1	0	0	0	0	1	0	0	0	16629	933	33	2	1308	2	TRIM6	11	5632299	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	66073	5632299	129374217	2422	21272										
OR56A3	0	genome.wustl.edu	37	chr11	5968729	5968729	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaacaccaccctcctgatGaccatctggctggaggcctc	9	17	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	5968729	5968729	G	A	SNP	OR56A3	ENST00000329564	human	ensembl	69_37n	1	known	missense	c.153	p.M51I	0.803	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56A3	HGNC	ENSG00000184478	102	0	0	86	59	40.69	-	-	-	A	5968729	G	A	5968729	3	1	240	1	0	0	0	0	1	0	0	0	11207	1290	45	2	155	2	OR56A3	11	5968729	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	336430	5968729	129037787	2423	21273										
OR52L1	0	genome.wustl.edu	37	chr11	6007810	6007810	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatggatgaagaacatctgGatcaggcagacgatgtaccc	12	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6007810	6007810	G	C	SNP	OR52L1	ENST00000332249	human	ensembl	69_37n	-1	known	missense	c.351	p.I117M	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313	55	0	0	69	16	18.82	-	-	-	C	6007810	G	C	6007810	3	2	240	1	0	0	0	0	1	0	0	0	11198	1164	41	2	642	2	OR52L1	11	6007810	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39081	6007810	128998706	2424	21274										
FAM160A2	0	genome.wustl.edu	37	chr11	6238629	6238629	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctggcttggcagctggttGagagtccgcaaagggctgct	17	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6238629	6238629	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	silent	c.2229	p.L743	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	36	0	0	33	7	17.5	-	-	-	A	6238629	G	A	6238629	2	1	240	1	0	0	0	0	0	0	0	1	5509	1277	45	2		2	FAM160A2	11	6238629	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230819	6238629	128767887	2425	21275										
CNGA4	0	genome.wustl.edu	37	chr11	6262772	6262772	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtgcacctgtccactctGagccgggtgcagatctttca	10	13	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6262772	6262772	G	C	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	silent	c.1029	p.L343	1.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	26	0	0	33	22	40	-	-	-	C	6262772	G	C	6262772	2	2	240	1	0	0	0	0	0	0	0	1	3629	1277	45	2		2	CNGA4	11	6262772	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24143	6262772	128743744	2426	21276										
DNHD1	0	genome.wustl.edu	37	chr11	6566518	6566518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctccctaagtggctggcctCtctggagaagtgtctgcgct	12	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6566518	6566518	C	G	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.4349	p.S1450C	0.118	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	45	0	0	65	19	22.62	-	-	-	G	6566518	C	G	6566518	3	3	240	1	0	0	0	0	1	0	0	0	4703	913	32	2	4432	2	DNHD1	11	6566518	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	303746	6566518	128439998	2427	21277										
DNHD1	0	genome.wustl.edu	37	chr11	6588481	6588481	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaattgagagcacacctGacccgccagctgctgggcag	12	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6588481	6588481	G	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.11742	p.L3914	0.981	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	25	0	0	35	17	32.69	-	-	-	T	6588481	G	T	6588481	2	4	240	1	0	0	0	0	0	0	0	1	4703	1277	45	2		2	DNHD1	11	6588481	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21963	6588481	128418035	2428	21278										
ILK	0	genome.wustl.edu	37	chr11	6631396	6631396	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctctgcagaagaagcctGaagacacaaacagacgctca	9	12	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6631396	6631396	G	A	SNP	ILK	ENST00000299421	human	ensembl	69_37n	1	known	missense	c.1096	p.E366K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333	63	0	0	89	21	19.09	-	-	-	A	6631396	G	A	6631396	3	1	240	1	0	0	0	0	1	0	0	0	7767	1291	45	2	1138	2	ILK	11	6631396	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42915	6631396	128375120	2429	21279										
OR6A2	0	genome.wustl.edu	37	chr11	6816496	6816496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccaagagccagcagccatCtgcacacacagccggccact	9	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6816496	6816496	C	G	SNP	OR6A2	ENST00000332601	human	ensembl	69_37n	-1	known	missense	c.444	p.Q148H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	60	0	0	81	15	15.62	-	-	-	G	6816496	C	G	6816496	3	3	240	1	0	0	0	0	1	0	0	0	11259	912	32	2	543	2	OR6A2	11	6816496	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	185100	6816496	128190020	2430	21280										
OR10A4	0	genome.wustl.edu	37	chr11	6898524	6898524	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctttcctttcttgctgatcCtgggatcctatgtccgcatc	7	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6898524	6898524	C	G	SNP	OR10A4	ENST00000379829	human	ensembl	69_37n	1	known	missense	c.646	p.L216V	0.960	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10A4	HGNC	ENSG00000170782	136	1	0.73	147	34	18.78	-	-	-	G	6898524	C	G	6898524	3	3	240	1	0	0	0	0	1	0	0	0	10965	680	24	4	648	4	OR10A4	11	6898524	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	82028	6898524	128107992	2431	21281										
ZNF215	0	genome.wustl.edu	37	chr11	6977355	6977355	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaattcctatgaatgttatCaatgtgggaaagccttctgc	9	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	6977355	6977355	C	G	SNP	ZNF215	ENST00000278319	human	ensembl	69_37n	1	known	missense	c.1147	p.Q383E	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054	40	0	0	38	11	22.45	-	-	-	G	6977355	C	G	6977355	3	3	240	1	0	0	0	0	1	0	0	0	17867	827	29	2	1165	2	ZNF215	11	6977355	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78831	6977355	128029161	2432	21282										
NLRP14	0	genome.wustl.edu	37	chr11	7064922	7064922	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgtaaaatgtcactgaaGataaaatcaaagttacttca	5	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	7064922	7064922	G	A	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	silent	c.1665	p.K555	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	56	0	0	83	13	13.4	-	-	-	A	7064922	G	A	7064922	2	1	240	1	0	0	0	0	0	0	0	1	10548	933	33	2		2	NLRP14	11	7064922	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	87567	7064922	127941594	2433	21283										
OLFML1	0	genome.wustl.edu	37	chr11	7531061	7531061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggctctgggccatccactCtgggccaggcacccatagcc	12	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	7531061	7531061	C	G	SNP	OLFML1	ENST00000329293	human	ensembl	69_37n	1	known	missense	c.851	p.S284C	0.998	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML1	HGNC	ENSG00000183801	71	0	0	40	28	41.18	-	-	-	G	7531061	C	G	7531061	3	3	240	1	0	0	0	0	1	0	0	0	10929	913	32	2	861	2	OLFML1	11	7531061	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	466139	7531061	127475455	2434	21284										
PPFIBP2	0	genome.wustl.edu	37	chr11	7674392	7674392	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagtggctaccggggcctCagcccccttgatgcccctga	11	16	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	7674392	7674392	C	T	SNP	PPFIBP2	ENST00000534552	human	ensembl	69_37n	1	putative	nonsense	c.268	p.Q90*	0.921	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPFIBP2	HGNC	ENSG00000166387	30	0	0	29	8	21.62	-	-	-	T	7674392	C	T	7674392	4	4	240	1	0	0	0	0	0	1	0	0	12387	813	29	2	2664	2	PPFIBP2	11	7674392	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	143331	7674392	127332124	2435	21285										
OR5P2	0	genome.wustl.edu	37	chr11	7817782	7817782	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtgaggtgggaagtgcaGgtggagaaggccttgtggtg	20	4	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	7817782	7817782	G	A	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	silent	c.708	p.T236	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	97	0	0	89	21	18.92	-	-	-	A	7817782	G	A	7817782	2	1	240	1	0	0	0	0	0	0	0	1	11251	987	35	4		4	OR5P2	11	7817782	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	143390	7817782	127188734	2436	21286										
OR5P2	0	genome.wustl.edu	37	chr11	7818342	7818342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atacataggatgatggagctGagaagaaattctgataagaa	11	3	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	7818342	7818342	G	C	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	missense	c.148	p.Q50E	0.982	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	47	0	0	52	17	24.64	-	-	-	C	7818342	G	C	7818342	3	2	240	1	0	0	0	0	1	0	0	0	11251	1299	45	2	824	2	OR5P2	11	7818342	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	560	7818342	127188174	2437	21287										
TUB	0	genome.wustl.edu	37	chr11	8122480	8122480	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacacacagtcctatgtactCaacttccatgggcgcgtcac	8	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	8122480	8122480	C	G	SNP	TUB	ENST00000305253	human	ensembl	69_37n	1	known	silent	c.1488	p.L496	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	84	0	0	125	25	16.67	-	-	-	G	8122480	C	G	8122480	2	3	240	1	0	0	0	0	0	0	0	1	16839	813	29	2		2	TUB	11	8122480	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	304138	8122480	126884036	2438	21288										
NRIP3	0	genome.wustl.edu	37	chr11	9005663	9005663	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaagggacaagtttttctCattgtcatctaataaaaaca	5	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	9005663	9005663	C	G	SNP	NRIP3	ENST00000309166	human	ensembl	69_37n	-1	known	missense	c.571	p.E191Q	1.000	pfam_Peptidase_aspartic_euk-pred,superfamily_Peptidase_aspartic	pfam_Peptidase_aspartic_euk-pred,superfamily_Peptidase_aspartic	-	no_errors	NRIP3	HGNC	ENSG00000175352	65	0	0	58	14	19.18	-	-	-	G	9005663	C	G	9005663	3	3	240	1	0	0	0	0	1	0	0	0	10727	835	29	2	166	2	NRIP3	11	9005663	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	883183	9005663	126000853	2439	21289										
WEE1	0	genome.wustl.edu	37	chr11	9598794	9598794	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgatcatatgcttatacaGaatgaatattgtaatggtga	9	3	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	9598794	9598794	G	C	SNP	WEE1	ENST00000450114	human	ensembl	69_37n	1	known	missense	c.1125	p.Q375H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE1	HGNC	ENSG00000166483	91	0	0	62	41	39.81	-	-	-	C	9598794	G	C	9598794	3	2	240	1	0	0	0	0	1	0	0	0	17441	933	33	2	1143	2	WEE1	11	9598794	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	593131	9598794	125407722	2440	21290										
SWAP70	0	genome.wustl.edu	37	chr11	9759853	9759853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggttcagcacagagctgGaaagagagaagcttgtgagt	14	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	9759853	9759853	G	A	SNP	SWAP70	ENST00000318950	human	ensembl	69_37n	1	known	missense	c.1174	p.E392K	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_HAND_2,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789	68	0	0	46	38	45.24	-	-	-	A	9759853	G	A	9759853	3	1	240	1	0	0	0	0	1	0	0	0	15516	1175	41	2	1204	2	SWAP70	11	9759853	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	161059	9759853	125246663	2441	21291										
SBF2	0	genome.wustl.edu	37	chr11	10024132	10024132	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaggaaacattaaagattCcagggctctacaagcatcac	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	10024132	10024132	C	A	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	nonsense	c.724	p.E242*	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	100	0	0	84	28	25	-	-	-	A	10024132	C	A	10024132	4	1	240	1	0	0	0	0	0	1	0	0	13946	864	30	2	4961	2	SBF2	11	10024132	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	264279	10024132	124982384	2442	21292										
AMPD3	0	genome.wustl.edu	37	chr11	10516483	10516483	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgctttgacaagttcaactCcaaatacaaccctgtggggg	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	10516483	10516483	C	G	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	missense	c.1172	p.S391C	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	97	0	0	91	19	17.27	-	-	-	G	10516483	C	G	10516483	3	3	240	1	0	0	0	0	1	0	0	0	587	855	30	2	1249	2	AMPD3	11	10516483	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	492351	10516483	124490033	2443	21293										
MICAL2	0	genome.wustl.edu	37	chr11	12183807	12183807	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaggccttcaacattctCacacgacacctggacctaga	6	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	12183807	12183807	C	G	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	silent	c.105	p.L35	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	53	0	0	62	17	21.52	-	-	-	G	12183807	C	G	12183807	2	3	240	1	0	0	0	0	0	0	0	1	9641	813	29	2		2	MICAL2	11	12183807	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1667324	12183807	122822709	2444	21294										
INSC	0	genome.wustl.edu	37	chr11	15170775	15170775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtcaccctgccgggtcagCggtaagtcctacagctgtca	11	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	15170775	15170775	C	T	SNP	INSC	ENST00000379554	human	ensembl	69_37n	1	known	missense	c.196	p.R66W	0.999	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487	30	0	0	33	11	25	-	-	-	T	15170775	C	T	15170775	3	4	240	1	0	0	0	0	1	0	0	0	7818	782	27	1	202	1	INSC	11	15170775	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2986968	15170775	119835741	2445	21295										
ABCC8	0	genome.wustl.edu	37	chr11	17416823	17416823	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcagggtccaggttaaatCtggaagtggcacagaaagcc	12	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	17416823	17416823	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	splice_site	c.4311-1	e36-1	1.000	-	-	-	no_errors	ABCC8	HGNC	ENSG00000006071	25	0	0	37	11	22.92	-	-	-	T	17416823	C	T	17416823	5	4	240	1	0	0	0	0	0	0	1	0	58	927	32	2	454	2	ABCC8	11	17416823	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2246048	17416823	117589693	2446	21296										
ABCC8	0	genome.wustl.edu	37	chr11	17432137	17432137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgtcgtcccggagcagctCaaggatgccggcctgcatta	12	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	17432137	17432137	C	G	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.2623	p.E875Q	0.997	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	67	0	0	110	31	21.99	-	-	-	G	17432137	C	G	17432137	3	3	240	1	0	0	0	0	1	0	0	0	58	835	29	2	2197	2	ABCC8	11	17432137	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15314	17432137	117574379	2447	21297										
USH1C	0	genome.wustl.edu	37	chr11	17552718	17552718	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctggagcccgacgctgtCtgcctgaccgcctttgatga	11	15	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	17552718	17552718	C	T	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.370	p.D124N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	8	0	0	20	13	39.39	-	-	-	T	17552718	C	T	17552718	3	4	240	1	0	0	0	0	1	0	0	0	17131	913	32	2	2503	2	USH1C	11	17552718	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	120581	17552718	117453798	2448	21298										
MRGPRX4	0	genome.wustl.edu	37	chr11	18195312	18195312	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtttagtggtgctgattCtagttggtgtgaaacgtcag	13	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	18195312	18195312	C	G	SNP	MRGPRX4	ENST00000314254	human	ensembl	69_37n	1	known	missense	c.509	p.S170C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	255	0	0	332	68	17	-	-	-	G	18195312	C	G	18195312	3	3	240	1	0	0	0	0	1	0	0	0	9841	913	32	2	511	2	MRGPRX4	11	18195312	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	642594	18195312	116811204	2449	21299										
IGSF22	0	genome.wustl.edu	37	chr11	18733777	18733777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccgtccacctcgcctatCttaatccaggacttcttgcc	6	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	18733777	18733777	C	G	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	missense	c.2250	p.K750N	0.982	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	85	0	0	112	27	19.42	-	-	-	G	18733777	C	G	18733777	3	3	240	1	0	0	0	0	1	0	0	0	7654	912	32	2	1766	2	IGSF22	11	18733777	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	538465	18733777	116272739	2450	21300										
E2F8	0	genome.wustl.edu	37	chr11	19252338	19252338	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctcttttgaagaccgtctCacctccaaatcagagggagt	8	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	19252338	19252338	C	T	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	silent	c.1110	p.V370	0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	80	0	0	60	26	30.23	-	-	-	T	19252338	C	T	19252338	2	4	240	1	0	0	0	0	0	0	0	1	4908	813	29	2		2	E2F8	11	19252338	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	518561	19252338	115754178	2451	21301										
HTATIP2	0	genome.wustl.edu	37	chr11	20404603	20404603	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttggctccttaccagactCttgggccagtgggcattctg	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	20404603	20404603	C	T	SNP	HTATIP2	ENST00000419348	human	ensembl	69_37n	1	known	missense	c.683	p.S228F	0.989	NULL	pfam_Semialdehyde_DH_NAD-bd	-	no_errors	HTATIP2	HGNC	ENSG00000109854	107	0	0	118	18	13.24	-	-	-	T	20404603	C	T	20404603	3	4	240	1	0	0	0	0	1	0	0	0	7486	913	32	2	804	2	HTATIP2	11	20404603	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1152265	20404603	114601913	2452	21302										
SLC6A5	0	genome.wustl.edu	37	chr11	20652252	20652252	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagggacactctaattgtCacctgcaccaacagtgccac	7	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	20652252	20652252	C	T	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	silent	c.1515	p.V505	0.964	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	99	0	0	105	33	23.91	-	-	-	T	20652252	C	T	20652252	2	4	240	1	0	0	0	0	0	0	0	1	14776	813	29	2		2	SLC6A5	11	20652252	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	247649	20652252	114354264	2453	21303										
NELL1	0	genome.wustl.edu	37	chr11	21594894	21594894	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggacagctatggtgtttCacggcttagtggctcagtgt	13	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	21594894	21594894	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.2321	p.S774L	0.070	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	64	0	0	76	35	31.53	-	-	-	T	21594894	C	T	21594894	3	4	240	1	0	0	0	0	1	0	0	0	10405	838	29	2	2395	2	NELL1	11	21594894	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	942642	21594894	113411622	2454	21304										
CCDC34	0	genome.wustl.edu	37	chr11	27360465	27360465	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggctgacttatcacaggtCttttactcttccttcctgat	7	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	27360465	27360465	C	G	SNP	CCDC34	ENST00000328697	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342T	0.938	NULL	NULL	-	no_errors	CCDC34	HGNC	ENSG00000109881	127	0	0	115	70	37.84	-	-	-	G	27360465	C	G	27360465	3	3	240	1	0	0	0	0	1	0	0	0	2833	913	32	2	100	2	CCDC34	11	27360465	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5765571	27360465	107646051	2455	21305										
LGR4	0	genome.wustl.edu	37	chr11	27390284	27390284	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaaaagggcagcaacccgGaactgtttgagatgattgct	12	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	27390284	27390284	G	A	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	silent	c.1986	p.F662	0.961	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	79	0	0	81	17	17.35	-	-	-	A	27390284	G	A	27390284	2	1	240	1	0	0	0	0	0	0	0	1	8811	1165	41	2		2	LGR4	11	27390284	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29819	27390284	107616232	2456	21306										
KIF18A	0	genome.wustl.edu	37	chr11	28084022	28084022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgctttcaaatctttgttCtggaggtgcaaatggtgaca	11	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	28084022	28084022	C	T	SNP	KIF18A	ENST00000263181	human	ensembl	69_37n	-1	known	silent	c.1632	p.Q544	0.998	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621	274	0	0	167	50	23.04	-	-	-	T	28084022	C	T	28084022	2	4	240	1	0	0	0	0	0	0	0	1	8332	912	32	2		2	KIF18A	11	28084022	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	693738	28084022	106922494	2457	21307										
MPPED2	0	genome.wustl.edu	37	chr11	30516994	30516994	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagtcctgtttaacaaggtCtgccatgaattccttatcaa	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	30516994	30516994	C	T	SNP	MPPED2	ENST00000358117	human	ensembl	69_37n	-1	known	missense	c.385	p.D129N	1.000	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382	87	0	0	92	22	19.13	-	-	-	T	30516994	C	T	30516994	3	4	240	1	0	0	0	0	1	0	0	0	9814	913	32	2	587	2	MPPED2	11	30516994	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2432972	30516994	104489522	2458	21308										
DNAJC24	0	genome.wustl.edu	37	chr11	31392334	31392334	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccaaaaaaggattggtaCagcatcctgggagcagaccc	11	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	31392334	31392334	C	A	SNP	DNAJC24	ENST00000465995	human	ensembl	69_37n	1	known	nonsense	c.39	p.Y13*	0.851	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,pfam_Znf_DHP,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_Znf_DHP,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC24	HGNC	ENSG00000170946	83	0	0	49	11	18.33	-	-	-	A	31392334	C	A	31392334	4	1	240	1	0	0	0	0	0	1	0	0	4677	489	17	4	41	4	DNAJC24	11	31392334	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	875340	31392334	103614182	2459	21309										
QSER1	0	genome.wustl.edu	37	chr11	32954530	32954530	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaggttagctattcatctCaatcacaagttttgtcagtt	6	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	32954530	32954530	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.1339	p.Q447E	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	58	0	0	51	21	29.17	-	-	-	G	32954530	C	G	32954530	3	3	240	1	0	0	0	0	1	0	0	0	12965	827	29	2	1345	2	QSER1	11	32954530	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1562196	32954530	102051986	2460	21310										
QSER1	0	genome.wustl.edu	37	chr11	32954651	32954651	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctcagaatttgccagactCtagcccgacccagaattata	8	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	32954651	32954651	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.1460	p.S487C	0.988	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	92	0	0	68	16	19.05	-	-	-	G	32954651	C	G	32954651	3	3	240	1	0	0	0	0	1	0	0	0	12965	913	32	2	1466	2	QSER1	11	32954651	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	121	32954651	102051865	2461	21311										
CSTF3	0	genome.wustl.edu	37	chr11	33123740	33123740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctctttttgttataaggGtctgatcctctgtacgaaga	8	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	33123740	33123740	G	A	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.809	p.T270I	1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	183	0	0	97	69	41.57	-	-	-	A	33123740	G	A	33123740	3	1	240	1	0	0	0	0	1	0	0	0	4018	1261	44	4	1392	4	CSTF3	11	33123740	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	169089	33123740	101882776	2462	21312										
HIPK3	0	genome.wustl.edu	37	chr11	33370299	33370299	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactccccgagtcctgcagtGagtgtcatcactatcagcag	10	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	33370299	33370299	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	silent	c.2601	p.V867	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	39	0	0	43	13	22.81	-	-	-	A	33370299	G	A	33370299	2	1	240	1	0	0	0	0	0	0	0	1	7169	1277	45	2		2	HIPK3	11	33370299	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	246559	33370299	101636217	2463	21313										
NAT10	0	genome.wustl.edu	37	chr11	34160972	34160972	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttgctctcctaccagttCagtaccttctctccttccct	4	18	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	34160972	34160972	C	T	SNP	NAT10	ENST00000257829	human	ensembl	69_37n	1	known	silent	c.2349	p.F783	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	67	0	0	76	20	20.83	-	-	-	T	34160972	C	T	34160972	2	4	240	1	0	0	0	0	0	0	0	1	10246	825	29	2		2	NAT10	11	34160972	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	790673	34160972	100845544	2464	21314										
NAT10	0	genome.wustl.edu	37	chr11	34163894	34163894	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaagagcatggacctctctGagtaaggcttgtgggaagca	14	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	34163894	34163894	G	A	SNP	NAT10	ENST00000257829	human	ensembl	69_37n	1	known	missense	c.2884	p.E962K	0.833	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	112	0	0	111	32	22.38	-	-	-	A	34163894	G	A	34163894	3	1	240	1	0	0	0	0	1	0	0	0	10246	1304	45	2	2986	2	NAT10	11	34163894	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2922	34163894	100842622	2465	21315										
COMMD9	0	genome.wustl.edu	37	chr11	36297734	36297734	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccatgcggctgatgctgtCtgaggaggttttgatatcca	14	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	36297734	36297734	C	T	SNP	COMMD9	ENST00000263401	human	ensembl	69_37n	-1	known	missense	c.409	p.D137N	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442	70	0	0	54	30	35.71	-	-	-	T	36297734	C	T	36297734	3	4	240	1	0	0	0	0	1	0	0	0	3753	913	32	2	195	2	COMMD9	11	36297734	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2133840	36297734	98708782	2466	21316										
TTC17	0	genome.wustl.edu	37	chr11	43471726	43471726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacgagtatgcataccctgGaccacttgcatggggtttcc	10	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	43471726	43471726	G	T	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.2881	p.D961Y	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	69	0	0	95	15	13.64	-	-	-	T	43471726	G	T	43471726	3	4	240	1	0	0	0	0	1	0	0	0	16781	1174	41	2	2959	2	TTC17	11	43471726	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7173992	43471726	91534790	2467	21317										
ACCSL	0	genome.wustl.edu	37	chr11	44076821	44076821	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgaatccatcacattccaCagcattctgagcatgaaaag	7	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	44076821	44076821	C	G	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.1119	p.H373Q	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	109	0	0	66	47	41.59	-	-	-	G	44076821	C	G	44076821	3	3	240	1	0	0	0	0	1	0	0	0	134	477	17	4	1153	4	ACCSL	11	44076821	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	605095	44076821	90929695	2468	21318										
PHF21A	0	genome.wustl.edu	37	chr11	45986874	45986874	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgcctgtacctgtttttCaagacttggcttgctaagct	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	45986874	45986874	C	G	SNP	PHF21A	ENST00000257821	human	ensembl	69_37n	-1	known	missense	c.988	p.E330Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365	68	0	0	86	20	18.87	-	-	-	G	45986874	C	G	45986874	3	3	240	1	0	0	0	0	1	0	0	0	11907	835	29	2	1124	2	PHF21A	11	45986874	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1910053	45986874	89019642	2469	21319										
DGKZ	0	genome.wustl.edu	37	chr11	46397491	46397491	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactacgacaaggagcagctCaaggaggcctgtgagtgcgg	15	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	46397491	46397491	C	T	SNP	DGKZ	ENST00000454345	human	ensembl	69_37n	1	known	silent	c.2565	p.L855	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091	12	0	0	15	10	40	-	-	-	T	46397491	C	T	46397491	2	4	240	1	0	0	0	0	0	0	0	1	4510	813	29	2		2	DGKZ	11	46397491	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	410617	46397491	88609025	2470	21320										
CKAP5	0	genome.wustl.edu	37	chr11	46799088	46799088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagttgttgcaggatattCagcgtttgctgtacctgagt	12	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	46799088	46799088	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	silent	c.2763	p.L921	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	141	0	0	150	27	15.25	-	-	-	T	46799088	C	T	46799088	2	4	240	1	0	0	0	0	0	0	0	1	3475	813	29	2		2	CKAP5	11	46799088	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	401597	46799088	88207428	2471	21321										
LRP4	0	genome.wustl.edu	37	chr11	46880828	46880828	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggcagattccctctacgatCttgatcttctccttggtgta	8	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	46880828	46880828	C	G	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.5424	p.K1808N	1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	139	0	0	161	41	20.3	-	-	-	G	46880828	C	G	46880828	3	3	240	1	0	0	0	0	1	0	0	0	9025	912	32	2	297	2	LRP4	11	46880828	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	81740	46880828	88125688	2472	21322										
LRP4	0	genome.wustl.edu	37	chr11	46903306	46903306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattgtcttcatgccggcgtCagcccagtatagacgctggg	12	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	46903306	46903306	C	T	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.2761	p.D921N	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	75	0	0	112	17	13.18	-	-	-	T	46903306	C	T	46903306	3	4	240	1	0	0	0	0	1	0	0	0	9025	826	29	2	3032	2	LRP4	11	46903306	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22478	46903306	88103210	2473	21323										
MADD	0	genome.wustl.edu	37	chr11	47296497	47296497	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagcctctcagtgctgactCtacccctgatgtgaaccagt	9	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47296497	47296497	C	G	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.446	p.S149C	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	36	0	0	63	14	18.18	-	-	-	G	47296497	C	G	47296497	3	3	240	1	0	0	0	0	1	0	0	0	9219	913	32	2	452	2	MADD	11	47296497	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	393191	47296497	87710019	2474	21324										
MADD	0	genome.wustl.edu	37	chr11	47297700	47297700	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaccttcccttggaacttCtaggtgtggacgcctgtctc	10	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47297700	47297700	C	G	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.910	p.L304V	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	60	0	0	81	9	10	-	-	-	G	47297700	C	G	47297700	3	3	240	1	0	0	0	0	1	0	0	0	9219	912	32	2	920	2	MADD	11	47297700	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1203	47297700	87708816	2475	21325										
MYBPC3	0	genome.wustl.edu	37	chr11	47371455	47371455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcgccggccacgcgggctGagaaggtgatgctgccacct	16	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47371455	47371455	G	A	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	missense	c.524	p.S175L	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	34	0	0	46	13	22.03	-	-	-	A	47371455	G	A	47371455	3	1	240	1	0	0	0	0	1	0	0	0	10085	1294	45	2	3413	2	MYBPC3	11	47371455	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73755	47371455	87635061	2476	21326										
KBTBD4	0	genome.wustl.edu	37	chr11	47594846	47594846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtcaaagcactggatgagtCgggaaggtttggtaaagaag	15	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47594846	47594846	C	T	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	missense	c.1241	p.R414Q	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	79	0	0	104	16	13.33	-	-	-	T	47594846	C	T	47594846	3	4	240	1	0	0	0	0	1	0	0	0	8049	884	31	1	367	1	KBTBD4	11	47594846	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	223391	47594846	87411670	2477	21327										
FAM180B	0	genome.wustl.edu	37	chr11	47608280	47608280	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggcagatgagggagcagaGaactgctgaacagagtgaga	16	6	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47608280	47608280	G	A	SNP	FAM180B	ENST00000356737	human	ensembl	69_37n	1	known	missense	c.83	p.R28K	0.001	NULL	NULL	-	no_errors	FAM180B	HGNC	ENSG00000196666	65	0	0	100	47	31.76	-	-	-	A	47608280	G	A	47608280	3	1	240	1	0	0	0	0	1	0	0	0	5548	957	33	2		2	FAM180B	11	47608280	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13434	47608280	87398236	2478	21328										
NUP160	0	genome.wustl.edu	37	chr11	47801924	47801924	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgactgttggcactgttctCtcccagagcttggagaagct	12	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47801924	47801924	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.4192	p.E1398K	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	124	0	0	115	23	16.55	-	-	-	T	47801924	C	T	47801924	3	4	240	1	0	0	0	0	1	0	0	0	10830	922	32	2	126	2	NUP160	11	47801924	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	193644	47801924	87204592	2479	21329										
NUP160	0	genome.wustl.edu	37	chr11	47837500	47837500	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctctacccaagcctcacctCattttcaacagctaaagtaa	3	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	47837500	47837500	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.1513	p.E505K	1.000	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	112	0	0	128	23	15.23	-	-	-	T	47837500	C	T	47837500	3	4	240	1	0	0	0	0	1	0	0	0	10830	835	29	2	2897	2	NUP160	11	47837500	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	35576	47837500	87169016	2480	21330										
OR4X1	0	genome.wustl.edu	37	chr11	48285505	48285505	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttctgtgatgtttctcctCatgtacacagctgttgtgct	8	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	48285505	48285505	C	G	SNP	OR4X1	ENST00000320048	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.863	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567	182	0	0	262	61	18.83	-	-	-	G	48285505	C	G	48285505	2	3	240	1	0	0	0	0	0	0	0	1	11157	813	29	2		2	OR4X1	11	48285505	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	448005	48285505	86721011	2481	21331										
OR4S1	0	genome.wustl.edu	37	chr11	48327992	48327992	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgacatatgttatccatCcactaccatacccaagatga	5	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	48327992	48327992	C	G	SNP	OR4S1	ENST00000319988	human	ensembl	69_37n	1	known	missense	c.218	p.S73C	0.230	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	154	0	0	212	45	17.51	-	-	-	G	48327992	C	G	48327992	3	3	240	1	0	0	0	0	1	0	0	0	11155	855	30	2	220	2	OR4S1	11	48327992	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	42487	48327992	86678524	2482	21332										
OR4C12	0	genome.wustl.edu	37	chr11	50003840	50003840	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagaataaactgtgtctatCaaagaaaggtgggtcaggaa	12	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	50003840	50003840	C	G	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	missense	c.198	p.L66F	0.653	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	66	0	0	62	8	11.43	-	-	-	G	50003840	C	G	50003840	3	3	240	1	0	0	0	0	1	0	0	0	11119	825	29	2	735	2	OR4C12	11	50003840	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1675848	50003840	85002676	2483	21333										
OR4C12	0	genome.wustl.edu	37	chr11	50003881	50003881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagtacatgggggagctcaGagcctggctggtggtaatgg	18	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	50003881	50003881	G	C	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	missense	c.157	p.L53V	0.202	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	69	0	0	46	23	33.33	-	-	-	C	50003881	G	C	50003881	3	2	240	1	0	0	0	0	1	0	0	0	11119	933	33	2	776	2	OR4C12	11	50003881	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41	50003881	85002635	2484	21334										
TRIM48	0	genome.wustl.edu	37	chr11	55032430	55032430	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggaactcacctgccccatCtgcatgaactacttcataga	7	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55032430	55032430	C	G	SNP	TRIM48	ENST00000417545	human	ensembl	69_37n	1	known	missense	c.99	p.I33M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244	113	0	0	117	39	24.84	-	-	-	G	55032430	C	G	55032430	3	3	240	1	0	0	0	0	1	0	0	0	16619	903	32	2	105	2	TRIM48	11	55032430	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5028549	55032430	79974086	2485	21335										
OR5L1	0	genome.wustl.edu	37	chr11	55579138	55579138	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtactttttcctcagccacTtgtcctctgtagatttctgc	6	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55579138	55579138	T	C	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	silent	c.196	p.L66	0.455	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	209	0	0	238	49	17.07	-	-	-	C	55579138	T	C	55579138	2	2	240	1	0	0	0	0	0	0	0	1	11243	1606	56	5		5	OR5L1	11	55579138	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	546708	55579138	79427378	2486	21336										
OR5L2	0	genome.wustl.edu	37	chr11	55595173	55595173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtgttctctgattcactCgtccttagctcttaggatcc	9	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55595173	55595173	C	T	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.479	p.S160L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	68	0	0	61	35	36.46	-	-	-	T	55595173	C	T	55595173	3	4	240	1	0	0	0	0	1	0	0	0	11244	893	31	1	481	1	OR5L2	11	55595173	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16035	55595173	79411343	2487	21337										
OR5D16	0	genome.wustl.edu	37	chr11	55607001	55607001	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttccatggcaccatcctCttcctctactgtgtacccaa	4	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55607001	55607001	C	G	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	silent	c.774	p.L258	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	98	0	0	140	23	14.11	-	-	-	G	55607001	C	G	55607001	2	3	240	1	0	0	0	0	0	0	0	1	11229	900	32	2		2	OR5D16	11	55607001	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11828	55607001	79399515	2488	21338										
OR10AG1	0	genome.wustl.edu	37	chr11	55735242	55735242	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacaactattaggtgagatGagcaggtggagaaggcttta	13	4	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55735242	55735242	G	T	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	nonsense	c.698	p.S233*	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	66	0	0	66	20	23.26	-	-	-	T	55735242	G	T	55735242	4	4	240	1	0	0	0	0	0	1	0	0	10970	1294	45	2	210	2	OR10AG1	11	55735242	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128241	55735242	79271274	2489	21339										
OR10AG1	0	genome.wustl.edu	37	chr11	55735328	55735328	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccataagagacaacaatCaacagaaatggcaccgtgat	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55735328	55735328	C	G	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	missense	c.612	p.L204F	0.247	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	90	0	0	62	47	42.73	-	-	-	G	55735328	C	G	55735328	3	3	240	1	0	0	0	0	1	0	0	0	10970	825	29	2	296	2	OR10AG1	11	55735328	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86	55735328	79271188	2490	21340										
OR8K5	0	genome.wustl.edu	37	chr11	55927406	55927406	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataataacataatagagcaGagggttacaaatggccacat	8	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	55927406	55927406	G	C	SNP	OR8K5	ENST00000313447	human	ensembl	69_37n	-1	known	missense	c.388	p.L130V	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752	64	0	0	55	7	11.29	-	-	-	C	55927406	G	C	55927406	3	2	240	1	0	0	0	0	1	0	0	0	11318	933	33	2	538	2	OR8K5	11	55927406	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192078	55927406	79079110	2491	21341										
OR5M8	0	genome.wustl.edu	37	chr11	56258825	56258825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggagaatgaactcagtcaCcaacgtgcagtttcttctca	8	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	56258825	56258825	C	T	SNP	OR5M8	ENST00000327216	human	ensembl	69_37n	-1	known	missense	c.22	p.V8M	0.003	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371	14	0	0	15	6	28.57	-	-	-	T	56258825	C	T	56258825	3	4	240	1	0	0	0	0	1	0	0	0	11249	507	18	4	917	4	OR5M8	11	56258825	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	331419	56258825	78747691	2492	21342										
OR5AK2	0	genome.wustl.edu	37	chr11	56756597	56756597	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaacatttggcttttgttgAtatctgttacacttctgcta	6	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	56756597	56756597	A	G	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.209	p.D70G	0.956	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	146	0	0	129	33	20.37	-	-	-	G	56756597	A	G	56756597	3	3	240	1	0	0	0	0	1	0	0	0	11215	333	12	5	211	5	OR5AK2	11	56756597	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	497772	56756597	78249919	2493	21343										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57089272	57089272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacccattggtacctggctCagagccagtaggcaccagct	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57089272	57089272	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.88	p.E30K	0.963	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	49	0	0	37	24	39.34	-	-	-	T	57089272	C	T	57089272	3	4	240	1	0	0	0	0	1	0	0	0	16415	835	29	2	5141	2	TNKS1BP1	11	57089272	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	332675	57089272	77917244	2494	21344										
SMTNL1	0	genome.wustl.edu	37	chr11	57310508	57310508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgaggaaaaggagagcacGctggcctctgagaagcagaa	15	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57310508	57310508	G	A	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	silent	c.447	p.T149	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	48	0	0	26	48	64.86	-	-	-	A	57310508	G	A	57310508	2	1	240	1	0	0	0	0	0	0	0	1	14904	1074	38	1		1	SMTNL1	11	57310508	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	221236	57310508	77696008	2495	21345										
UBE2L6	0	genome.wustl.edu	37	chr11	57321943	57321943	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgcaaggcttccagttctCactgctgatgatgggcaggc	14	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57321943	57321943	C	G	SNP	UBE2L6	ENST00000287156	human	ensembl	69_37n	-1	known	missense	c.277	p.E93Q	0.206	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L6	HGNC	ENSG00000156587	106	0	0	78	102	56.67	-	-	-	G	57321943	C	G	57321943	3	3	240	1	0	0	0	0	1	0	0	0	16961	835	29	2	192	2	UBE2L6	11	57321943	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11435	57321943	77684573	2496	21346										
UBE2L6	0	genome.wustl.edu	37	chr11	57327816	57327816	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatggatactcacgggtagGaggagagcgtgccacaccag	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57327816	57327816	G	A	SNP	UBE2L6	ENST00000287156	human	ensembl	69_37n	-1	known	silent	c.117	p.L39	0.991	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L6	HGNC	ENSG00000156587	45	0	0	66	8	10.81	-	-	-	A	57327816	G	A	57327816	2	1	240	1	0	0	0	0	0	0	0	1	16961	1161	41	2		2	UBE2L6	11	57327816	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5873	57327816	77678700	2497	21347										
SERPING1	0	genome.wustl.edu	37	chr11	57369596	57369596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccaggccctgaagggcttCacgaccaaaggtgtcacctc	10	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57369596	57369596	C	T	SNP	SERPING1	ENST00000278407	human	ensembl	69_37n	1	known	silent	c.639	p.F213	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	55	0	0	46	15	24.59	-	-	-	T	57369596	C	T	57369596	2	4	240	1	0	0	0	0	0	0	0	1	14204	825	29	2		2	SERPING1	11	57369596	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41780	57369596	77636920	2498	21348										
CLP1	0	genome.wustl.edu	37	chr11	57428680	57428680	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcaagaggataatcagctCaagctagtacctgtcactcc	7	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57428680	57428680	C	G	SNP	CLP1	ENST00000525602	human	ensembl	69_37n	1	known	silent	c.1050	p.L350	0.922	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	CLP1	HGNC	ENSG00000172409	77	0	0	117	21	15.22	-	-	-	G	57428680	C	G	57428680	2	3	240	1	0	0	0	0	0	0	0	1	3580	813	29	2		2	CLP1	11	57428680	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59084	57428680	77577836	2499	21349										
MED19	0	genome.wustl.edu	37	chr11	57472688	57472688	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcagattcgtgctgcctgtCagctctgtgctacctagaca	9	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57472688	57472688	C	G	SNP	MED19	ENST00000431606	human	ensembl	69_37n	-1	known	silent	c.231	p.L77	0.993	pfam_Mediator_Med19_met	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	MED19	HGNC	ENSG00000156603	51	0	0	68	23	25.27	-	-	-	G	57472688	C	G	57472688	2	3	240	1	0	0	0	0	0	0	0	1	9508	813	29	2		2	MED19	11	57472688	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44008	57472688	77533828	2500	21350										
C11orf31	0	genome.wustl.edu	37	chr11	57509152	57509152	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagctggcgaacggcgggGagggaatggaggaggcgacc	21	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	57509152	57509152	G	C	SNP	C11orf31	ENST00000388857	human	ensembl	69_37n	1	known	missense	c.85	p.E29Q	0.000	NULL	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	pseudogene	C11orf31	HGNC	ENSG00000211450	53	0	0	41	10	19.61	-	-	-	C	57509152	G	C	57509152	3	2	240	1	0	0	0	0	1	0	0	0	1648	1175	41	2	87	2	C11orf31	11	57509152	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	36464	57509152	77497364	2501	21351										
ZFP91	0	genome.wustl.edu	37	chr11	58385028	58385028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgtcaaagtcatactgcaGtgggacggaacgggtgagcc	15	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	58385028	58385028	G	A	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1562	p.S521N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	70	0	0	58	36	37.89	-	-	-	A	58385028	G	A	58385028	3	1	240	1	0	0	0	0	1	0	0	0	17751	1029	36	4	1604	4	ZFP91	11	58385028	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	875876	58385028	76621488	2502	21352										
OR4D11	0	genome.wustl.edu	37	chr11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagagtttggtcttgtttCtttttttatgtcttgtgtac	8	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	59271133	59271133	C	G	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	missense	c.85	p.L29V	0.055	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	75	0	0	87	20	18.69	-	-	-	G	59271133	C	G	59271133	3	3	240	1	0	0	0	0	1	0	0	0	11128	913	32	2	87	2	OR4D11	11	59271133	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	886105	59271133	75735383	2503	21353										
OR4D9	0	genome.wustl.edu	37	chr11	59282894	59282894	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcccactccctttctgtgGacccaatgttcttgacactt	6	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	59282894	59282894	G	C	SNP	OR4D9	ENST00000329328	human	ensembl	69_37n	1	known	missense	c.509	p.G170A	0.496	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742	89	0	0	94	25	21.01	-	-	-	C	59282894	G	C	59282894	3	2	240	1	0	0	0	0	1	0	0	0	11132	1174	41	2	511	2	OR4D9	11	59282894	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11761	59282894	75723622	2504	21354										
TCN1	0	genome.wustl.edu	37	chr11	59633941	59633941	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagctggtgtgactgtctCatctctccaacagtgtacca	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	59633941	59633941	C	G	SNP	TCN1	ENST00000257264	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.949	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827	117	0	0	83	45	35.16	-	-	-	G	59633941	C	G	59633941	3	3	240	1	0	0	0	0	1	0	0	0	15801	826	29	2	1334	2	TCN1	11	59633941	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	351047	59633941	75372575	2505	21355										
MS4A14	0	genome.wustl.edu	37	chr11	60183888	60183888	+	Missense_Mutation	SNP	T	T	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactccatagaagaaaatccTcaagacggcattccttaaac							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	60183888	60183888	T	A	SNP	MS4A14	ENST00000300187	human	ensembl	69_37n	1	known	missense	c.1447	p.S483T	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	53	0	0	54	11	16.92	-	-	-	A	60183888	T	A	60183888	3	1	240	1	0	0	0	0	1	0	0	0	9930	1551	54	5	1465	5	MS4A14	11	60183888	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	549947	60183888	74822628	2506	21356	209	2								
MS4A14	0	genome.wustl.edu	37	chr11	60183892	60183892	+	Missense_Mutation	SNP	G	G	C													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatagaagaaaatcctcaaGacggcattccttaaaccagc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	60183892	60183892	G	C	SNP	MS4A14	ENST00000300187	human	ensembl	69_37n	1	known	missense	c.1451	p.R484T	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	57	0	0	54	11	16.92	-	-	-	C	60183892	G	C	60183892	3	2	240	1	0	0	0	0	1	0	0	0	9930	942	33	2	1469	2	MS4A14	11	60183892	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4	60183892	74822624	2507	21357	209	2								
MS4A10	0	genome.wustl.edu	37	chr11	60565946	60565946	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcccccgccatcctaccaGagtgtgattcaaggcgacgc	11	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	60565946	60565946	G	C	SNP	MS4A10	ENST00000308287	human	ensembl	69_37n	1	known	missense	c.681	p.Q227H	0.004	NULL	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689	90	0	0	92	21	18.58	-	-	-	C	60565946	G	C	60565946	3	2	240	1	0	0	0	0	1	0	0	0	9927	933	33	2	703	2	MS4A10	11	60565946	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	382054	60565946	74440570	2508	21358										
TMEM132A	0	genome.wustl.edu	37	chr11	60694793	60694793	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacccacctgccaactcctCtctgagctcccgatctgaga	6	18	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	60694793	60694793	C	G	SNP	TMEM132A	ENST00000005286	human	ensembl	69_37n	1	known	missense	c.218	p.S73C	0.984	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	37	0	0	22	6	21.43	-	-	-	G	60694793	C	G	60694793	3	3	240	1	0	0	0	0	1	0	0	0	16140	913	32	2	224	2	TMEM132A	11	60694793	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	128847	60694793	74311723	2509	21359										
VWCE	0	genome.wustl.edu	37	chr11	61026670	61026670	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtcgggggcccaggacagGagctacagttgacaggggcc	17	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	61026670	61026670	G	C	SNP	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	missense	c.2345	p.S782C	0.081	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	40	0	0	44	15	25.42	-	-	-	C	61026670	G	C	61026670	3	2	240	1	0	0	0	0	1	0	0	0	17342	1174	41	2	526	2	VWCE	11	61026670	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	331877	61026670	73979846	2510	21360										
DDB1	0	genome.wustl.edu	37	chr11	61081549	61081549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catctccttgtgcagtagttCaaaagagggcaacttcaaga	9	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	61081549	61081549	C	T	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.1723	p.E575K	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	85	0	0	96	27	21.95	-	-	-	T	61081549	C	T	61081549	3	4	240	1	0	0	0	0	1	0	0	0	4354	835	29	2	1755	2	DDB1	11	61081549	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54879	61081549	73924967	2511	21361										
DAK	0	genome.wustl.edu	37	chr11	61113373	61113373	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggagctccaagcctggaaGagcccaggagctgatctgtt	13	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	61113373	61113373	G	C	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	missense	c.1530	p.K510N	0.994	pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	41	0	0	56	25	30.86	-	-	-	C	61113373	G	C	61113373	3	2	240	1	0	0	0	0	1	0	0	0	4260	933	33	2	1592	2	DAK	11	61113373	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31824	61113373	73893143	2512	21362										
DAGLA	0	genome.wustl.edu	37	chr11	61511557	61511557	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggggactcgcccagtcctCaggtgctggaattcgccgag	15	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	61511557	61511557	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	nonsense	c.2725	p.Q909*	0.989	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	15	0	0	12	6	33.33	-	-	-	T	61511557	C	T	61511557	4	4	240	1	0	0	0	0	0	1	0	0	4258	827	29	2	2799	2	DAGLA	11	61511557	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	398184	61511557	73494959	2513	21363										
AHNAK	0	genome.wustl.edu	37	chr11	62290072	62290072	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaagccaggcatgctgatCttgggcatttttatcttagg	11	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62290072	62290072	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.11817	p.K3939	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	160	0	0	160	36	18.37	-	-	-	T	62290072	C	T	62290072	2	4	240	1	0	0	0	0	0	0	0	1	414	912	32	2		2	AHNAK	11	62290072	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	778515	62290072	72716444	2514	21364										
AHNAK	0	genome.wustl.edu	37	chr11	62296327	62296327	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccacatcaggcatggagatCttgggggccttgaagtgcat	13	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62296327	62296327	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.5562	p.K1854	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	172	0	0	199	55	21.65	-	-	-	T	62296327	C	T	62296327	2	4	240	1	0	0	0	0	0	0	0	1	414	912	32	2		2	AHNAK	11	62296327	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6255	62296327	72710189	2515	21365										
EML3	0	genome.wustl.edu	37	chr11	62378355	62378355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggaagcctcacccacctctCtgtgctcccggaccgcacta	9	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62378355	62378355	C	T	SNP	EML3	ENST00000529309	human	ensembl	69_37n	-1	known	missense	c.562	p.E188K	0.989	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499	13	0	0	12	10	45.45	-	-	-	T	62378355	C	T	62378355	3	4	240	1	0	0	0	0	1	0	0	0	5135	922	32	2	2204	2	EML3	11	62378355	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	82028	62378355	72628161	2516	21366										
ROM1	0	genome.wustl.edu	37	chr11	62381027	62381027	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcaagtctgaatgcagctCtataccctccctggcgaggg	13	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62381027	62381027	C	G	SNP	ROM1	ENST00000278833	human	ensembl	69_37n	1	known	missense	c.274	p.L92V	0.001	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489	20	0	0	48	14	22.58	-	-	-	G	62381027	C	G	62381027	3	3	240	1	0	0	0	0	1	0	0	0	13607	912	32	2	276	2	ROM1	11	62381027	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2672	62381027	72625489	2517	21367										
GANAB	0	genome.wustl.edu	37	chr11	62394582	62394582	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagtctgatacagggtgaaCcagcaacgcatcccctaaaa	9	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62394582	62394582	C	G	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.2326	p.V776L	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	67	0	0	107	29	21.32	-	-	-	G	62394582	C	G	62394582	3	3	240	1	0	0	0	0	1	0	0	0	6283	507	18	4	598	4	GANAB	11	62394582	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13555	62394582	72611934	2518	21368										
BSCL2	0	genome.wustl.edu	37	chr11	62458096	62458096	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctcaccatcactggcctCaggctctagctcctcttctc	5	20	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62458096	62458096	C	T	SNP	BSCL2	ENST00000360796	human	ensembl	69_37n	-1	known	missense	c.1222	p.E408K	0.977	NULL	pfam_Adipose-reg_protein_Seipin	-	no_errors	BSCL2	HGNC	ENSG00000168000	43	0	0	45	26	36.62	-	-	-	T	62458096	C	T	62458096	3	4	240	1	0	0	0	0	1	0	0	0	1535	835	29	2	174	2	BSCL2	11	62458096	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63514	62458096	72548420	2519	21369										
TMEM179B	0	genome.wustl.edu	37	chr11	62554930	62554930	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtcctggctgcagcgcgtCgagcttgcgctctttgctgc	13	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62554930	62554930	C	T	SNP	TMEM179B	ENST00000333449	human	ensembl	69_37n	1	known	silent	c.27	p.V9	0.108	NULL	NULL	-	no_errors	TMEM179B	HGNC	ENSG00000185475	15	0	0	3	5	62.5	-	-	-	T	62554930	C	T	62554930	2	4	240	1	0	0	0	0	0	0	0	1	16192	871	31	1		1	TMEM179B	11	62554930	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96834	62554930	72451586	2520	21370										
NXF1	0	genome.wustl.edu	37	chr11	62569075	62569075	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggtcaagggcttgttggGagccatcgtatcgtttgctc	14	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62569075	62569075	G	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.668	p.S223C	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	213	0	0	251	43	14.63	-	-	-	C	62569075	G	C	62569075	3	2	240	1	0	0	0	0	1	0	0	0	10855	1174	41	2	1306	2	NXF1	11	62569075	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14145	62569075	72437441	2521	21371										
WDR74	0	genome.wustl.edu	37	chr11	62601954	62601954	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtactctccataggtggtctCtaggactggccggcgctggg	15	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62601954	62601954	C	G	SNP	WDR74	ENST00000278856	human	ensembl	69_37n	-1	known	missense	c.664	p.E222Q	0.907	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316	24	0	0	7	14	66.67	-	-	-	G	62601954	C	G	62601954	3	3	240	1	0	0	0	0	1	0	0	0	17421	922	32	2	513	2	WDR74	11	62601954	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32879	62601954	72404562	2522	21372										
CHRM1	0	genome.wustl.edu	37	chr11	62677493	62677493	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggtccgagccgccttcttCtccttgaccagcgagaaggt	12	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	62677493	62677493	C	G	SNP	CHRM1	ENST00000306960	human	ensembl	69_37n	-1	known	missense	c.1080	p.E360D	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Musac_M1_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CHRM1	HGNC	ENSG00000168539	38	0	0	32	23	41.82	-	-	-	G	62677493	C	G	62677493	3	3	240	1	0	0	0	0	1	0	0	0	3405	912	32	2	306	2	CHRM1	11	62677493	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	75539	62677493	72329023	2523	21373										
MARK2	0	genome.wustl.edu	37	chr11	63676392	63676392	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaacgacaaagaaaaggaaGaatttcgggaggccaagccc	12	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	63676392	63676392	G	C	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	missense	c.2050	p.E684Q	0.893	superfamily_Kinase-assoc_KA1	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	9	0	0	7	11	61.11	-	-	-	C	63676392	G	C	63676392	3	2	240	1	0	0	0	0	1	0	0	0	9384	943	33	2	2124	2	MARK2	11	63676392	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	998899	63676392	71330124	2524	21374										
RCOR2	0	genome.wustl.edu	37	chr11	63681960	63681960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactagttcggctgcgggtCttcttccaagagtagtagta	11	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	63681960	63681960	C	G	SNP	RCOR2	ENST00000301459	human	ensembl	69_37n	-1	known	missense	c.534	p.K178N	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771	64	0	0	44	15	25.42	-	-	-	G	63681960	C	G	63681960	3	3	240	1	0	0	0	0	1	0	0	0	13266	912	32	2	1065	2	RCOR2	11	63681960	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5568	63681960	71324556	2525	21375										
MACROD1	0	genome.wustl.edu	37	chr11	63767714	63767714	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcacacttggccgggagccGatagccgccggtgatcttgg	14	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	63767714	63767714	G	C	SNP	MACROD1	ENST00000255681	human	ensembl	69_37n	-1	known	missense	c.649	p.R217G	1.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD1	HGNC	ENSG00000133315	24	0	0	14	5	26.32	-	-	-	C	63767714	G	C	63767714	3	2	240	1	0	0	0	0	1	0	0	0	9212	1057	37	3	352	3	MACROD1	11	63767714	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	85754	63767714	71238802	2526	21376										
PLCB3	0	genome.wustl.edu	37	chr11	64026030	64026030	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcgtggagctggacgtgtgGaagggacggccgcctgagga	20	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64026030	64026030	G	A	SNP	PLCB3	ENST00000279230	human	ensembl	69_37n	1	known	nonsense	c.1098	p.W366*	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCB3	HGNC	ENSG00000149782	47	0	0	43	7	14	-	-	-	A	64026030	G	A	64026030	4	1	240	1	0	0	0	0	0	1	0	0	12103	1183	41	2	1140	2	PLCB3	11	64026030	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	258316	64026030	70980486	2527	21377										
BAD	0	genome.wustl.edu	37	chr11	64039112	64039112	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtccacaaactcgtcactCatcctccggagctcgcggcc	9	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64039112	64039112	C	T	SNP	BAD	ENST00000309032	human	ensembl	69_37n	-1	known	missense	c.351	p.M117I	1.000	pfam_Bcl-2_BAD	pfam_Bcl-2_BAD	-	no_errors	BAD	HGNC	ENSG00000002330	34	0	0	38	8	17.39	-	-	-	T	64039112	C	T	64039112	3	4	240	1	0	0	0	0	1	0	0	0	1289	826	29	2	163	2	BAD	11	64039112	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13082	64039112	70967404	2528	21378										
SLC22A12	0	genome.wustl.edu	37	chr11	64359229	64359229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagcatcctagggagcttGagtcctgaggccctcctggc	13	14	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64359229	64359229	G	C	SNP	SLC22A12	ENST00000377574	human	ensembl	69_37n	1	known	missense	c.201	p.L67F	0.011	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891	11	0	0	39	7	15.22	-	-	-	C	64359229	G	C	64359229	3	2	240	1	0	0	0	0	1	0	0	0	14532	1281	45	2	203	2	SLC22A12	11	64359229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	320117	64359229	70647287	2529	21379										
NRXN2	0	genome.wustl.edu	37	chr11	64418829	64418829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actggaagaagaggtgcatgGaagcataggcttggagcgtg	17	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64418829	64418829	G	C	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.2816	p.S939C	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	61	0	0	120	17	12.41	-	-	-	C	64418829	G	C	64418829	3	2	240	1	0	0	0	0	1	0	0	0	10739	1174	41	2	2631	2	NRXN2	11	64418829	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59600	64418829	70587687	2530	21380										
RASGRP2	0	genome.wustl.edu	37	chr11	64496381	64496381	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcggggcagagagaagctGaaggcgcggtgatggtggct	22	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64496381	64496381	G	A	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	silent	c.1725	p.F575	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	49	0	0	76	28	26.92	-	-	-	A	64496381	G	A	64496381	2	1	240	1	0	0	0	0	0	0	0	1	13158	1281	45	2		2	RASGRP2	11	64496381	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77552	64496381	70510135	2531	21381										
PYGM	0	genome.wustl.edu	37	chr11	64514172	64514172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcaggcgctggcgggaagGctccacaccccagatctccc	13	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64514172	64514172	G	T	SNP	PYGM	ENST00000164139	human	ensembl	69_37n	-1	known	missense	c.2488	p.P830T	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	81	0	0	100	30	23.08	-	-	-	T	64514172	G	T	64514172	3	4	240	1	0	0	0	0	1	0	0	0	12945	1203	42	4	44	4	PYGM	11	64514172	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17791	64514172	70492344	2532	21382										
MEN1	0	genome.wustl.edu	37	chr11	64571837	64571837	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcgctgccgcttgaggaaaGacagagtgtagtcactaggg	15	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64571837	64571837	G	C	SNP	MEN1	ENST00000337652	human	ensembl	69_37n	-1	known	missense	c.1817	p.S606C	0.994	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	66	0	0	121	23	15.97	-	-	-	C	64571837	G	C	64571837	3	2	240	1	0	0	0	0	1	0	0	0	9543	942	33	2	34	2	MEN1	11	64571837	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	57665	64571837	70434679	2533	21383										
MEN1	0	genome.wustl.edu	37	chr11	64577258	64577258	+	Silent	SNP	T	T	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggctggagacacccccttcTcgaggatagagggacaggtc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64577258	64577258	T	A	SNP	MEN1	ENST00000337652	human	ensembl	69_37n	-1	known	silent	c.324	p.R108	0.968	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	46	0	0	49	43	46.74	-	-	-	A	64577258	T	A	64577258	2	1	240	1	0	0	0	0	0	0	0	1	9543	1538	54	5		5	MEN1	11	64577258	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	5421	64577258	70429258	2534	21384	210	2								
MEN1	0	genome.wustl.edu	37	chr11	64577259	64577259	+	Missense_Mutation	SNP	C	C	G													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctggagacacccccttctCgaggatagagggacaggtcg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64577259	64577259	C	G	SNP	MEN1	ENST00000337652	human	ensembl	69_37n	-1	known	missense	c.323	p.R108P	0.992	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	46	0	0	51	44	46.32	-	-	-	G	64577259	C	G	64577259	3	3	240	1	0	0	0	0	1	0	0	0	9543	884	31	3	1560	3	MEN1	11	64577259	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1	64577259	70429257	2535	21385	210	2								
ATG2A	0	genome.wustl.edu	37	chr11	64674139	64674139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccccaggcctcacacctCggtggtagagtgttgccttt	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64674139	64674139	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	missense	c.2981	p.R994Q	0.966	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	34	0	0	45	21	31.82	-	-	-	T	64674139	C	T	64674139	3	4	240	1	0	0	0	0	1	0	0	0	1097	884	31	1	2923	1	ATG2A	11	64674139	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96880	64674139	70332377	2536	21386										
ATG2A	0	genome.wustl.edu	37	chr11	64681348	64681348	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatcacccggagagtgctCcaccctcacgacagtgtcca	8	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64681348	64681348	C	A	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	nonsense	c.535	p.E179*	0.999	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	65	0	0	129	19	12.84	-	-	-	A	64681348	C	A	64681348	4	1	240	1	0	0	0	0	0	1	0	0	1097	864	30	2	5433	2	ATG2A	11	64681348	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7209	64681348	70325168	2537	21387										
SPDYC	0	genome.wustl.edu	37	chr11	64938826	64938826	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccccatctccatctcctatGagatgagtgactcccaagac	7	15	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	64938826	64938826	G	A	SNP	SPDYC	ENST00000377185	human	ensembl	69_37n	1	known	missense	c.55	p.E19K	0.764	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710	50	0	0	75	17	18.48	-	-	-	A	64938826	G	A	64938826	3	1	240	1	0	0	0	0	1	0	0	0	15119	1291	45	2	61	2	SPDYC	11	64938826	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	257478	64938826	70067690	2538	21388										
SLC22A20	0	genome.wustl.edu	37	chr11	65004159	65004159	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacacacctcccacaggcaGatggggatgggctttgcctc	11	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65004159	65004159	G	A	SNP	SLC22A20	ENST00000525437	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847	21	0	0	37	11	22.92	-	-	-	A	65004159	G	A	65004159	1	1	240	0	1	0	0	0	0	0	0	0	14541	957	33	2		2	SLC22A20	11	65004159	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	65333	65004159	70002357	2539	21389										
POLA2	0	genome.wustl.edu	37	chr11	65034164	65034164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctcagagatcctgaactCttttgagcatgaggtaagaa	9	8	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65034164	65034164	C	G	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	missense	c.191	p.S64C	0.432	pfam_Pol_alpha_B_N,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	95	0	0	67	49	42.24	-	-	-	G	65034164	C	G	65034164	3	3	240	1	0	0	0	0	1	0	0	0	12262	913	32	2	197	2	POLA2	11	65034164	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30005	65034164	69972352	2540	21390										
LTBP3	0	genome.wustl.edu	37	chr11	65319033	65319033	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcactgagtccgtggtcaCccctaaaagggaagaagatg	11	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65319033	65319033	C	A	SNP	LTBP3	ENST00000301873	human	ensembl	69_37n	-1	known	missense	c.1534	p.V512L	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	43	0	0	86	17	16.35	-	-	-	A	65319033	C	A	65319033	3	1	240	1	0	0	0	0	1	0	0	0	9141	507	18	4	2457	4	LTBP3	11	65319033	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	284869	65319033	69687483	2541	21391										
PCNXL3	0	genome.wustl.edu	37	chr11	65384451	65384451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgggggagctggaggaaGagcctgcccagggggacagc	19	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65384451	65384451	G	C	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.310	p.E104Q	0.916	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	26	0	0	70	13	15.66	-	-	-	C	65384451	G	C	65384451	3	2	240	1	0	0	0	0	1	0	0	0	11666	943	33	2	316	2	PCNXL3	11	65384451	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	65418	65384451	69622065	2542	21392										
PCNXL3	0	genome.wustl.edu	37	chr11	65384757	65384757	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgacagtgttccggaaagtCagttccacacccccggtgcg	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65384757	65384757	C	G	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	silent	c.378	p.V126	0.999	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	93	0	0	142	30	17.44	-	-	-	G	65384757	C	G	65384757	2	3	240	1	0	0	0	0	0	0	0	1	11666	813	29	2		2	PCNXL3	11	65384757	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	306	65384757	69621759	2543	21393										
SART1	0	genome.wustl.edu	37	chr11	65745368	65745368	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccggaaactcacacccaagGaggtgagcagggccttttgc	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65745368	65745368	G	T	SNP	SART1	ENST00000312397	human	ensembl	69_37n	1	known	nonsense	c.2170	p.E724*	1.000	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	20	0	0	17	12	41.38	-	-	-	T	65745368	G	T	65745368	4	4	240	1	0	0	0	0	0	1	0	0	13933	1175	41	2	2236	2	SART1	11	65745368	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	360611	65745368	69261148	2544	21394										
SF3B2	0	genome.wustl.edu	37	chr11	65835430	65835430	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcgcagaagtgagacacctCagctcttcactgtgttgcca	9	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	65835430	65835430	C	T	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	nonsense	c.2344	p.Q782*	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	99	0	0	94	19	16.81	-	-	-	T	65835430	C	T	65835430	4	4	240	1	0	0	0	0	0	1	0	0	14239	827	29	2	2422	2	SF3B2	11	65835430	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	90062	65835430	69171086	2545	21395										
KLC2	0	genome.wustl.edu	37	chr11	66033149	66033149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacagtcaacaccaccctgcGcagcttgggggccctatacc	9	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66033149	66033149	G	A	SNP	KLC2	ENST00000316924	human	ensembl	69_37n	1	known	missense	c.1358	p.R453H	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	15	0	0	21	11	34.38	-	-	-	A	66033149	G	A	66033149	3	1	240	1	0	0	0	0	1	0	0	0	8387	1087	38	1	1400	1	KLC2	11	66033149	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	197719	66033149	68973367	2546	21396										
CD248	0	genome.wustl.edu	37	chr11	66082629	66082629	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctggttagtggggctctGagagggcaggagggtgggga	23	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66082629	66082629	G	C	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	missense	c.1870	p.Q624E	0.405	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	78	0	0	140	23	14.11	-	-	-	C	66082629	G	C	66082629	3	2	240	1	0	0	0	0	1	0	0	0	3018	1299	45	2	407	2	CD248	11	66082629	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49480	66082629	68923887	2547	21397										
SLC29A2	0	genome.wustl.edu	37	chr11	66136072	66136072	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggccctggccgctgaggaaGagggtgctgtaggtggaggg	21	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66136072	66136072	G	C	SNP	SLC29A2	ENST00000541567	human	ensembl	69_37n	-1	known	missense	c.418	p.L140V	0.997	NULL	NULL	-	no_errors	SLC29A2	HGNC	ENSG00000174669	13	0	0	36	11	23.4	-	-	-	C	66136072	G	C	66136072	3	2	240	1	0	0	0	0	1	0	0	0	14624	929	33	2	916	2	SLC29A2	11	66136072	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	53443	66136072	68870444	2548	21398										
ACTN3	0	genome.wustl.edu	37	chr11	66324666	66324666	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccaggaaaacgagaagctGatggaggagtatgagaagct	14	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66324666	66324666	G	A	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	silent	c.996	p.L332	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	54	0	0	75	19	20.21	-	-	-	A	66324666	G	A	66324666	2	1	240	1	0	0	0	0	0	0	0	1	206	1277	45	2		2	ACTN3	11	66324666	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	188594	66324666	68681850	2549	21399										
ACTN3	0	genome.wustl.edu	37	chr11	66324679	66324679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagctgatggaggagtatGagaagcttgccagtgaggtg	17	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66324679	66324679	G	C	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	missense	c.1009	p.E337Q	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	54	0	0	68	22	24.44	-	-	-	C	66324679	G	C	66324679	3	2	240	1	0	0	0	0	1	0	0	0	206	1291	45	2	914	2	ACTN3	11	66324679	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13	66324679	68681837	2550	21400										
CTSF	0	genome.wustl.edu	37	chr11	66335102	66335102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgcagcagcacgtgtcttCcgagctcatccaggacttgg	11	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66335102	66335102	C	T	SNP	CTSF	ENST00000310325	human	ensembl	69_37n	-1	known	missense	c.344	p.G115E	0.014	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSF	HGNC	ENSG00000174080	39	0	0	46	17	26.98	-	-	-	T	66335102	C	T	66335102	3	4	240	1	0	0	0	0	1	0	0	0	4066	855	30	2	1154	2	CTSF	11	66335102	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10423	66335102	68671414	2551	21401										
CCDC87	0	genome.wustl.edu	37	chr11	66359836	66359836	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagagcactgcacttgggcGaagccagtgctgtgaggcca	14	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66359836	66359836	G	A	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	silent	c.651	p.F217	0.009	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	40	0	0	71	9	11.25	-	-	-	A	66359836	G	A	66359836	2	1	240	1	0	0	0	0	0	0	0	1	2889	1049	37	1		1	CCDC87	11	66359836	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24734	66359836	68646680	2552	21402										
RBM4	0	genome.wustl.edu	37	chr11	66410985	66410985	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgcccgggatgggagaccaGagcggctgctatcggtgcgg	19	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66410985	66410985	G	C	SNP	RBM4	ENST00000310092	human	ensembl	69_37n	1	known	missense	c.477	p.Q159H	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933	58	0	0	72	30	29.41	-	-	-	C	66410985	G	C	66410985	3	2	240	1	0	0	0	0	1	0	0	0	13217	933	33	2	483	2	RBM4	11	66410985	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51149	66410985	68595531	2553	21403										
LRFN4	0	genome.wustl.edu	37	chr11	66625782	66625782	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcactgcccccaggcgccttCgcccagctcggtcagctctc	10	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66625782	66625782	C	T	SNP	LRFN4	ENST00000309602	human	ensembl	69_37n	1	known	silent	c.567	p.F189	0.982	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN4	HGNC	ENSG00000173621	26	0	0	27	7	20.59	-	-	-	T	66625782	C	T	66625782	2	4	240	1	0	0	0	0	0	0	0	1	9006	883	31	1		1	LRFN4	11	66625782	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	214797	66625782	68380734	2554	21404										
LRFN4	0	genome.wustl.edu	37	chr11	66627743	66627743	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggccgccgcctggcctggGagtccctccctggtttttat	14	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66627743	66627743	G	C	SNP	LRFN4	ENST00000525479	human	ensembl	69_37n	1	novel	silent	c.1341	p.G447	0.082	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRFN4	HGNC	ENSG00000173621	32	0	0	25	13	34.21	-	-	-	C	66627743	G	C	66627743	2	2	240	1	0	0	0	0	0	0	0	1	9006	1189	41	2		2	LRFN4	11	66627743	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1961	66627743	68378773	2555	21405										
KDM2A	0	genome.wustl.edu	37	chr11	66999270	66999270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccacaatggacaagtgtggGatccccagtgtgctccccga	11	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	66999270	66999270	G	A	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.1318	p.D440N	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	53	0	0	79	31	28.18	-	-	-	A	66999270	G	A	66999270	3	1	240	1	0	0	0	0	1	0	0	0	8178	1174	41	2	1360	2	KDM2A	11	66999270	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	371527	66999270	68007246	2556	21406										
ADRBK1	0	genome.wustl.edu	37	chr11	67047367	67047367	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgtgttccagaaattcattGagaggtgagagcagggaagt	14	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	67047367	67047367	G	A	SNP	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	missense	c.499	p.E167K	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	69	0	0	137	26	15.95	-	-	-	A	67047367	G	A	67047367	3	1	240	1	0	0	0	0	1	0	0	0	343	1291	45	2	521	2	ADRBK1	11	67047367	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48097	67047367	67959149	2557	21407										
ANKRD13D	0	genome.wustl.edu	37	chr11	67066560	67066560	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatctggggctggcggtctGagaagatggaaactgttagc	16	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	67066560	67066560	G	C	SNP	ANKRD13D	ENST00000511455	human	ensembl	69_37n	1	known	missense	c.763	p.E255Q	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932	117	0	0	135	103	43.28	-	-	-	C	67066560	G	C	67066560	3	2	240	1	0	0	0	0	1	0	0	0	644	1291	45	2	789	2	ANKRD13D	11	67066560	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19193	67066560	67939956	2558	21408										
SSH3	0	genome.wustl.edu	37	chr11	67076953	67076953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaatgtgcgcctctgggatGaggagtcggcccagctgctg	15	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	67076953	67076953	G	A	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	missense	c.1147	p.E383K	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	46	0	0	72	14	16.28	-	-	-	A	67076953	G	A	67076953	3	1	240	1	0	0	0	0	1	0	0	0	15277	1291	45	2	1189	2	SSH3	11	67076953	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10393	67076953	67929563	2559	21409										
RPS6KB2	0	genome.wustl.edu	37	chr11	67200852	67200852	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaagaaaaccatggataaGatcatcaggggcaagctggc	13	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	67200852	67200852	G	C	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	missense	c.840	p.K280N	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	49	0	0	66	12	15.38	-	-	-	C	67200852	G	C	67200852	3	2	240	1	0	0	0	0	1	0	0	0	13743	933	33	2	878	2	RPS6KB2	11	67200852	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	123899	67200852	67805664	2560	21410										
LRP5	0	genome.wustl.edu	37	chr11	68171130	68171130	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgaccagctgcccgacctGatggggctcaaagctgtgaa	12	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	68171130	68171130	G	C	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	silent	c.1764	p.L588	0.337	pirsf_Low_density_Lipo_rcpt-rel_p5/6	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	57	0	0	100	16	13.79	-	-	-	C	68171130	G	C	68171130	2	2	240	1	0	0	0	0	0	0	0	1	9026	1277	45	2		2	LRP5	11	68171130	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	970278	68171130	66835386	2561	21411										
CPT1A	0	genome.wustl.edu	37	chr11	68542877	68542877	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccgcatagcccagctgGaggctgtcaatggacatgac	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	68542877	68542877	G	C	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	silent	c.1482	p.L494	0.010	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	58	0	0	107	18	14.4	-	-	-	C	68542877	G	C	68542877	2	2	240	1	0	0	0	0	0	0	0	1	3861	1161	41	2		2	CPT1A	11	68542877	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	371747	68542877	66463639	2562	21412										
ANO1	0	genome.wustl.edu	37	chr11	69978136	69978136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggcccgcgccagccacctCttcgacaaccccgccacggt	9	21	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	69978136	69978136	C	G	SNP	ANO1	ENST00000530480	human	ensembl	69_37n	1	novel	missense	c.803	p.S268C	1.000	NULL	pfam_Anoctamin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANO1	HGNC	ENSG00000131620	77	0	0	296	38	11.38	-	-	-	G	69978136	C	G	69978136	3	3	240	1	0	0	0	0	1	0	0	0	694	900	32	2	1251	2	ANO1	11	69978136	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1435259	69978136	65028380	2563	21413										
PPFIA1	0	genome.wustl.edu	37	chr11	70194314	70194314	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttgattcaggaagaaaaaGaaaatacagagcagcgggca	13	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	70194314	70194314	G	T	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	nonsense	c.1951	p.E651*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	66	0	0	280	36	11.39	-	-	-	T	70194314	G	T	70194314	4	4	240	1	0	0	0	0	0	1	0	0	12382	943	33	2	2009	2	PPFIA1	11	70194314	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	216178	70194314	64812202	2564	21414										
KRTAP5-11	0	genome.wustl.edu	37	chr11	71293714	71293714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggagcccccacaggagccaCagctggagcaggaacaggct	14	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	71293714	71293714	C	T	SNP	KRTAP5-11	ENST00000398530	human	ensembl	69_37n	-1	known	missense	c.170	p.C57Y	1.000	NULL	NULL	-	no_errors	KRTAP5-11	HGNC	ENSG00000204571	138	0	0	431	112	20.63	-	-	-	T	71293714	C	T	71293714	3	4	240	1	0	0	0	0	1	0	0	0	8614	478	17	4	304	4	KRTAP5-11	11	71293714	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1099400	71293714	63712802	2565	21415										
NUMA1	0	genome.wustl.edu	37	chr11	71727075	71727075	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagtcaaccgggccccatGagcctgggaggcctgctcca	14	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	71727075	71727075	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.1474	p.H492Y	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	72	0	0	52	35	40.23	-	-	-	A	71727075	G	A	71727075	3	1	240	1	0	0	0	0	1	0	0	0	10823	1290	45	2	4925	2	NUMA1	11	71727075	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	433361	71727075	63279441	2566	21416										
FOLR3	0	genome.wustl.edu	37	chr11	71850524	71850524	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaggctggaattggacctCaggtgaggacctgaggagat	15	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	71850524	71850524	C	G	SNP	FOLR3	ENST00000456237	human	ensembl	69_37n	1	known	nonsense	c.617	p.S206*	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	26	0	0	44	10	18.52	-	-	-	G	71850524	C	G	71850524	4	3	240	1	0	0	0	0	0	1	0	0	6029	838	29	2	499	2	FOLR3	11	71850524	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	123449	71850524	63155992	2567	21417										
INPPL1	0	genome.wustl.edu	37	chr11	71949089	71949089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccctgtttccttaggctCcgtgcctgcagggcgggcgg	15	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	71949089	71949089	C	A	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	missense	c.3556	p.P1186T	0.967	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	18	0	0	22	5	18.52	-	-	-	A	71949089	C	A	71949089	3	1	240	1	0	0	0	0	1	0	0	0	7815	855	30	2	3662	2	INPPL1	11	71949089	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98565	71949089	63057427	2568	21418										
ARAP1	0	genome.wustl.edu	37	chr11	72406638	72406638	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttcacaatggcagtgatCtcctcccgctgcttcctgag	8	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	72406638	72406638	C	G	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.3456	p.E1152D	0.978	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	68	0	0	48	22	31.43	-	-	-	G	72406638	C	G	72406638	3	3	240	1	0	0	0	0	1	0	0	0	840	912	32	2	940	2	ARAP1	11	72406638	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	457549	72406638	62599878	2569	21419										
UCP2	0	genome.wustl.edu	37	chr11	73687948	73687948	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggtatctccgaccacctCcagcccgggcctgagcttgg	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	73687948	73687948	C	G	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	missense	c.452	p.G151A	0.748	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	49	0	0	39	16	29.09	-	-	-	G	73687948	C	G	73687948	3	3	240	1	0	0	0	0	1	0	0	0	17028	855	30	2	493	2	UCP2	11	73687948	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1281310	73687948	61318568	2570	21420										
RNF169	0	genome.wustl.edu	37	chr11	74546613	74546613	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaactatgactccagcctCcaaccccatcattggtgtcc	5	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	74546613	74546613	C	G	SNP	RNF169	ENST00000299563	human	ensembl	69_37n	1	known	missense	c.965	p.S322C	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	57	0	0	27	40	59.7	-	-	-	G	74546613	C	G	74546613	3	3	240	1	0	0	0	0	1	0	0	0	13546	855	30	2	987	2	RNF169	11	74546613	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	858665	74546613	60459903	2571	21421										
NEU3	0	genome.wustl.edu	37	chr11	74705613	74705613	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgttccggcaggaagatGacagagggattacctaccgg	13	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	74705613	74705613	G	A	SNP	NEU3	ENST00000294064	human	ensembl	69_37n	1	known	missense	c.154	p.D52N	0.000	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU3	HGNC	ENSG00000162139	67	0	0	58	10	14.71	-	-	-	A	74705613	G	A	74705613	3	1	240	1	0	0	0	0	1	0	0	0	10415	1290	45	2	160	2	NEU3	11	74705613	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	159000	74705613	60300903	2572	21422										
C11orf30	0	genome.wustl.edu	37	chr11	76227257	76227257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgcaacccctggagctGcaacctatgtgaaaactacg	10	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	76227257	76227257	G	A	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.1585	p.A529T	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	77	0	0	33	38	53.52	-	-	-	A	76227257	G	A	76227257	3	1	240	1	0	0	0	0	1	0	0	0	1647	1319	46	4	1623	4	C11orf30	11	76227257	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1521644	76227257	58779259	2573	21423										
LRRC32	0	genome.wustl.edu	37	chr11	76372514	76372514	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagcaccgaggggacctgGagcaggcccagaacctggca	17	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	76372514	76372514	G	C	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	silent	c.123	p.L41	0.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	26	0	0	31	9	22.5	-	-	-	C	76372514	G	C	76372514	2	2	240	1	0	0	0	0	0	0	0	1	9053	1161	41	2		2	LRRC32	11	76372514	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145257	76372514	58634002	2574	21424										
ACER3	0	genome.wustl.edu	37	chr11	76701616	76701616	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaaagagccgatattccatCaggtaattttttgtaaatta	6	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	76701616	76701616	C	T	SNP	ACER3	ENST00000532485	human	ensembl	69_37n	1	known	nonsense	c.436	p.Q146*	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER3	HGNC	ENSG00000078124	224	2	0.88	102	109	51.66	-	-	-	T	76701616	C	T	76701616	4	4	240	1	0	0	0	0	0	1	0	0	140	827	29	2	458	2	ACER3	11	76701616	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	329102	76701616	58304900	2575	21425										
MYO7A	0	genome.wustl.edu	37	chr11	76892550	76892550	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgagcctgtcaatcactCagacatggtggacaagatgt	10	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	76892550	76892550	C	G	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	nonsense	c.2819	p.S940*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	66	0	0	42	18	30	-	-	-	G	76892550	C	G	76892550	4	3	240	1	0	0	0	0	0	1	0	0	10154	838	29	2	2905	2	MYO7A	11	76892550	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	190934	76892550	58113966	2576	21426										
PAK1	0	genome.wustl.edu	37	chr11	77051693	77051693	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggcccttggccttacctCacggcacacagctgcaattt	8	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	77051693	77051693	C	T	SNP	PAK1	ENST00000278568	human	ensembl	69_37n	-1	known	missense	c.1114	p.E372K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK1	HGNC	ENSG00000149269	88	0	0	52	49	48.51	-	-	-	T	77051693	C	T	77051693	3	4	240	1	0	0	0	0	1	0	0	0	11472	835	29	2	596	2	PAK1	11	77051693	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	159143	77051693	57954823	2577	21427										
GAB2	0	genome.wustl.edu	37	chr11	77930371	77930371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgccgcacgtctgtccactCctgcatggtgttctgcaggg	12	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	77930371	77930371	C	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	missense	c.1978	p.E660Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	67	0	0	55	61	52.59	-	-	-	G	77930371	C	G	77930371	3	3	240	1	0	0	0	0	1	0	0	0	6198	864	30	2	56	2	GAB2	11	77930371	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	878678	77930371	57076145	2578	21428										
ODZ4	0	genome.wustl.edu	37	chr11	78383083	78383083	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagacagacacctgccttctCtaagtatgtgtagctccatg	9	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	78383083	78383083	C	G	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.5788	p.E1930Q	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	66	0	0	33	35	51.47	-	-	-	G	78383083	C	G	78383083	3	3	240	1	0	0	0	0	1	0	0	0	10910	922	32	2	2537	2	ODZ4	11	78383083	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	452712	78383083	56623433	2579	21429										
ODZ4	0	genome.wustl.edu	37	chr11	78383155	78383155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcggcccgcctggtcgtattCcattctttcagacatgatgc	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	78383155	78383155	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.5716	p.E1906K	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	82	0	0	47	42	47.19	-	-	-	T	78383155	C	T	78383155	3	4	240	1	0	0	0	0	1	0	0	0	10910	864	30	2	2609	2	ODZ4	11	78383155	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72	78383155	56623361	2580	21430										
DLG2	0	genome.wustl.edu	37	chr11	83497702	83497702	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatccacacagagacatatCagaacattattagtttgagt	7	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	83497702	83497702	C	G	SNP	DLG2	ENST00000398301	human	ensembl	69_37n	-1	putative	nonstop	c.1658	p.*553S	0.000	NULL	pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DLG2	HGNC	ENSG00000150672	75	0	0	42	22	33.85	-	-	-	G	83497702	C	G	83497702	4	3	240	1	0	0	0	0	0	0	0	0	4591	841	29	2		2	DLG2	11	83497702	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5114547	83497702	51508814	2581	21431										
DLG2	0	genome.wustl.edu	37	chr11	83810051	83810051	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctccaatgtggggattatCtgtccccccagcaatactga	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	83810051	83810051	C	T	SNP	DLG2	ENST00000376104	human	ensembl	69_37n	-1	known	missense	c.664	p.D222N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_Guanylate_kin,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	71	0	0	41	15	26.79	-	-	-	T	83810051	C	T	83810051	3	4	240	1	0	0	0	0	1	0	0	0	4591	913	32	2	2389	2	DLG2	11	83810051	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	312349	83810051	51196465	2582	21432										
PICALM	0	genome.wustl.edu	37	chr11	85692938	85692938	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacaaggttggctaaagatGaatccaagtcatcagatact	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	85692938	85692938	G	A	SNP	PICALM	ENST00000393346	human	ensembl	69_37n	-1	known	missense	c.1625	p.S542L	1.000	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	PICALM	HGNC	ENSG00000073921	120	0	0	23	68	74.73	-	-	-	A	85692938	G	A	85692938	3	1	240	1	0	0	0	0	1	0	0	0	11954	1294	45	2	385	2	PICALM	11	85692938	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1882887	85692938	49313578	2583	21433										
CHORDC1	0	genome.wustl.edu	37	chr11	89956074	89956074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaccgtcggaattggtctCaggatcgaagcgctgaccgc	12	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	89956074	89956074	C	G	SNP	CHORDC1	ENST00000320585	human	ensembl	69_37n	-1	known	missense	c.49	p.E17Q	0.998	pfam_CHORD	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	CHORDC1	HGNC	ENSG00000110172	52	0	0	25	11	30.56	-	-	-	G	89956074	C	G	89956074	3	3	240	1	0	0	0	0	1	0	0	0	3394	835	29	2	993	2	CHORDC1	11	89956074	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4263136	89956074	45050442	2584	21434										
FAT3	0	genome.wustl.edu	37	chr11	92526110	92526110	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctggacaaagacaaaggaGaaaatgcagaactcatatat	8	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	92526110	92526110	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.4789	p.E1597K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	86	0	0	72	21	22.58	-	-	-	A	92526110	G	A	92526110	3	1	240	1	0	0	0	0	1	0	0	0	5737	943	33	2	4819	2	FAT3	11	92526110	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2570036	92526110	42480406	2585	21435										
FAT3	0	genome.wustl.edu	37	chr11	92577427	92577427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgcttccaggtacccattGatgtggtcgtgcatgtggag	14	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	92577427	92577427	G	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.10894	p.D3632H	0.784	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	31	0	0	23	13	36.11	-	-	-	C	92577427	G	C	92577427	3	2	240	1	0	0	0	0	1	0	0	0	5737	1290	45	2	10964	2	FAT3	11	92577427	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51317	92577427	42429089	2586	21436										
HEPHL1	0	genome.wustl.edu	37	chr11	93797515	93797515	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtatcctgaatagatattCagggacacggaatgatgtgg	13	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	93797515	93797515	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	missense	c.647	p.S216L	0.163	NULL	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	103	0	0	71	47	39.83	-	-	-	T	93797515	C	T	93797515	3	4	240	1	0	0	0	0	1	0	0	0	7106	838	29	2	661	2	HEPHL1	11	93797515	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1220088	93797515	41209001	2587	21437										
MTMR2	0	genome.wustl.edu	37	chr11	95578204	95578204	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgatagtatccatccaacatGagcatggcaagggaagtgag	12	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	95578204	95578204	G	T	SNP	MTMR2	ENST00000346299	human	ensembl	69_37n	-1	known	silent	c.1299	p.L433	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053	69	0	0	50	20	28.57	-	-	-	T	95578204	G	T	95578204	2	4	240	1	0	0	0	0	0	0	0	1	10016	1277	45	2		2	MTMR2	11	95578204	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1780689	95578204	39428312	2588	21438										
MTMR2	0	genome.wustl.edu	37	chr11	95581039	95581039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcattttgataggcatcttCactttcataacctccaccct	4	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	95581039	95581039	C	G	SNP	MTMR2	ENST00000346299	human	ensembl	69_37n	-1	known	missense	c.1018	p.E340Q	1.000	pfam_Myotub-related	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053	136	0	0	75	55	42.31	-	-	-	G	95581039	C	G	95581039	3	3	240	1	0	0	0	0	1	0	0	0	10016	835	29	2	937	2	MTMR2	11	95581039	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2835	95581039	39425477	2589	21439										
JRKL	0	genome.wustl.edu	37	chr11	96125259	96125259	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attaatcatgcagctgccctCcagtggactgaaaatttatt	7	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	96125259	96125259	C	G	SNP	JRKL	ENST00000332349	human	ensembl	69_37n	1	known	silent	c.1446	p.L482	0.996	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	JRKL	HGNC	ENSG00000183340	21	0	0	13	12	48	-	-	-	G	96125259	C	G	96125259	2	3	240	1	0	0	0	0	0	0	0	1	8019	842	30	2		2	JRKL	11	96125259	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	544220	96125259	38881257	2590	21440										
BIRC2	0	genome.wustl.edu	37	chr11	102221586	102221586	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctgaaggtcgcaatgatGatgtcaaatgcttttgttgt	10	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	102221586	102221586	G	T	SNP	BIRC2	ENST00000227758	human	ensembl	69_37n	1	known	missense	c.907	p.D303Y	1.000	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330	339	1	0.29	254	64	20.06	-	-	-	T	102221586	G	T	102221586	3	4	240	1	0	0	0	0	1	0	0	0	1440	1290	45	2	913	2	BIRC2	11	102221586	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6096327	102221586	32784930	2591	21441										
DYNC2H1	0	genome.wustl.edu	37	chr11	103036729	103036729	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaactggtgaataagttaGagcaatatactaacattgat	7	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	103036729	103036729	G	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.4714	p.E1572Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	37	0	0	30	8	21.05	-	-	-	C	103036729	G	C	103036729	3	2	240	1	0	0	0	0	1	0	0	0	4881	943	33	2	4836	2	DYNC2H1	11	103036729	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	815143	103036729	31969787	2592	21442										
DYNC2H1	0	genome.wustl.edu	37	chr11	103229063	103229063	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgaactttctcctgtcctCaatctctggaagaaactaaa	5	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	103229063	103229063	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	silent	c.12153	p.L4051	0.999	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	138	0	0	99	29	22.66	-	-	-	G	103229063	C	G	103229063	2	3	240	1	0	0	0	0	0	0	0	1	4881	813	29	2		2	DYNC2H1	11	103229063	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	192334	103229063	31777453	2593	21443										
ATM	0	genome.wustl.edu	37	chr11	108100034	108100034	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtttggtcaaatacttcatCaaatgtgcaaacagaagtaa	7	6	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	108100034	108100034	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	silent	c.315	p.I105	1.000	pfam_TAN	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	61	0	0	46	12	20.69	-	-	-	T	108100034	C	T	108100034	2	4	240	1	0	0	0	0	0	0	0	1	1113	816	29	2		2	ATM	11	108100034	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4870971	108100034	26906482	2594	21444										
EXPH5	0	genome.wustl.edu	37	chr11	108384606	108384606	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgtggctcttcttggcctCtggaaacatctgttccataa	9	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	108384606	108384606	C	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.1628	p.R543I	0.073	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	42	0	0	46	14	23.33	-	-	-	A	108384606	C	A	108384606	3	1	240	1	0	0	0	0	1	0	0	0	5359	913	32	2	4345	2	EXPH5	11	108384606	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	284572	108384606	26621910	2595	21445										
DDX10	0	genome.wustl.edu	37	chr11	108590534	108590534	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taatttacagtgtttcgtctCctatgtacgatctgtatatc	6	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	108590534	108590534	C	G	SNP	DDX10	ENST00000322536	human	ensembl	69_37n	1	known	missense	c.1421	p.S474C	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105	165	1	0.6	126	31	19.75	-	-	-	G	108590534	C	G	108590534	3	3	240	1	0	0	0	0	1	0	0	0	4373	855	30	2	1467	2	DDX10	11	108590534	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	205928	108590534	26415982	2596	21446										
ZC3H12C	0	genome.wustl.edu	37	chr11	110034055	110034055	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagtctggataattttctGaggaagaaacctattgttcc	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	110034055	110034055	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	silent	c.1206	p.L402	0.990	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	114	0	0	61	25	29.07	-	-	-	A	110034055	G	A	110034055	2	1	240	1	0	0	0	0	0	0	0	1	17659	1277	45	2		2	ZC3H12C	11	110034055	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1443521	110034055	24972461	2597	21447										
ZC3H12C	0	genome.wustl.edu	37	chr11	110036325	110036325	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaggtatcaagacaaccgaGaaaagatttatatcaatttg	8	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	110036325	110036325	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	missense	c.2515	p.E839K	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	34	0	0	34	12	26.09	-	-	-	A	110036325	G	A	110036325	3	1	240	1	0	0	0	0	1	0	0	0	17659	943	33	2	2537	2	ZC3H12C	11	110036325	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2270	110036325	24970191	2598	21448										
RDX	0	genome.wustl.edu	37	chr11	110134900	110134900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaaacatcttcaggaaaGaatttagctctaaacttgaa	6	7	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	110134900	110134900	G	C	SNP	RDX	ENST00000530749	human	ensembl	69_37n	-1	known	missense	c.252	p.F84L	1.000	pirsf_ERM,pfam_FERM_N,smart_Band_41_domain,prints_Ez/rad/moesin,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710	67	0	0	33	12	26.67	-	-	-	C	110134900	G	C	110134900	3	2	240	1	0	0	0	0	1	0	0	0	13281	933	33	2	1539	2	RDX	11	110134900	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98575	110134900	24871616	2599	21449										
ARHGAP20	0	genome.wustl.edu	37	chr11	110450375	110450375	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcacaggggacagtccttCagctgcccttaagggcaagt	12	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	110450375	110450375	C	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.3295	p.E1099K	0.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	37	0	0	23	20	46.51	-	-	-	T	110450375	C	T	110450375	3	4	240	1	0	0	0	0	1	0	0	0	872	835	29	2	284	2	ARHGAP20	11	110450375	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	315475	110450375	24556141	2600	21450										
ARHGAP20	0	genome.wustl.edu	37	chr11	110501442	110501442	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagttctgcccggccatcaaTcagcagagtcctattggagc	11	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	110501442	110501442	T	C	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.262	p.I88V	0.991	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	63	0	0	18	20	52.63	-	-	-	C	110501442	T	C	110501442	3	2	240	1	0	0	0	0	1	0	0	0	872	1435	50	5	3365	5	ARHGAP20	11	110501442	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	51067	110501442	24505074	2601	21451										
NCAM1	0	genome.wustl.edu	37	chr11	113146014	113146014	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccccgtagaagcaaagccaGagtgccaggagacagaaacg	13	11	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	113146014	113146014	G	C	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.2452	p.E818Q	0.102	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	82	0	0	32	30	48.39	-	-	-	C	113146014	G	C	113146014	3	2	240	1	0	0	0	0	1	0	0	0	10274	943	33	2	2758	2	NCAM1	11	113146014	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2644572	113146014	21860502	2602	21452										
USP28	0	genome.wustl.edu	37	chr11	113700047	113700047	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatactggccgaaggtctCattgttacaaaagggttttc	11	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	113700047	113700047	C	A	SNP	USP28	ENST00000003302	human	ensembl	69_37n	-1	known	nonsense	c.931	p.E311*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_UBA-like,pfscan_Peptidase_C19	-	no_errors	USP28	HGNC	ENSG00000048028	104	0	0	68	22	24.18	-	-	-	A	113700047	C	A	113700047	4	1	240	1	0	0	0	0	0	1	0	0	17155	835	29	2	2366	2	USP28	11	113700047	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	554033	113700047	21306469	2603	21453										
USP28	0	genome.wustl.edu	37	chr11	113702712	113702712	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgtgaattcactcacatCttgctataagagaggcacaa	9	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	113702712	113702712	C	G	SNP	USP28	ENST00000540438	human	ensembl	69_37n	-1	known	splice_site	c.585-1	e7-1	1.000	-	-	-	no_errors	USP28	HGNC	ENSG00000048028	66	0	0	34	17	33.33	-	-	-	G	113702712	C	G	113702712	5	3	240	1	0	0	0	0	0	0	1	0	17155	913	32	2	2542	2	USP28	11	113702712	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2665	113702712	21303804	2604	21454										
HTR3A	0	genome.wustl.edu	37	chr11	113860484	113860484	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccatctggcagtacgcttGagtgggtacagcccagtgga	14	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	113860484	113860484	G	C	SNP	HTR3A	ENST00000355556	human	ensembl	69_37n	1	known	nonstop	c.1550	p.*517S	0.984	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736	23	0	0	11	9	45	-	-	-	C	113860484	G	C	113860484	4	2	240	1	0	0	0	0	0	0	0	0	7498	1285	45	2	1606	2	HTR3A	11	113860484	Nonstop_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	157772	113860484	21146032	2605	21455										
REXO2	0	genome.wustl.edu	37	chr11	114311459	114311459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatctcaacattttggctGaagtacgtgatgccatgtaa	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	114311459	114311459	G	C	SNP	REXO2	ENST00000265881	human	ensembl	69_37n	1	known	missense	c.229	p.E77Q	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO2	HGNC	ENSG00000076043	125	0	0	50	59	54.13	-	-	-	C	114311459	G	C	114311459	3	2	240	1	0	0	0	0	1	0	0	0	13325	1291	45	2	235	2	REXO2	11	114311459	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	450975	114311459	20695057	2606	21456										
REXO2	0	genome.wustl.edu	37	chr11	114315287	114315288	+	Frame_Shift_Ins	INS	-	-	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttaccaaggcagtgaaggINSagagtacaattacattgcag							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	114315287	114315288	-	A	INS	REXO2	ENST00000265881	human	ensembl	69_37n	1	known	frame_shift_ins	c.334_335	p.S113fs	1.000:1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO2	HGNC	ENSG00000076043	57	0	0	53	15	22.06	-	-	-	A	114315288	-	A	114315287	7	5	240	1	0	1	1	0	0	0	0	0	13325	1175	41	0	348	0	REXO2	11	114315287	Frame_Shift_Ins	INS	-	TCGA-AC-A23H-01A-11D-A159-09	3828	114315287	20691229	2607	21457										
SIK3	0	genome.wustl.edu	37	chr11	116827762	116827762	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatccagctgggtcttatCtatgatcttgatagcaacct	7	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	116827762	116827762	C	G	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	missense	c.292	p.D98H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	144	0	0	62	58	48.33	-	-	-	G	116827762	C	G	116827762	3	3	240	1	0	0	0	0	1	0	0	0	14408	913	32	2	3761	2	SIK3	11	116827762	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2512475	116827762	18178754	2608	21458										
SIDT2	0	genome.wustl.edu	37	chr11	117060985	117060985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacaaccgggccctgctgCgcaatgacctctgtgccctg	10	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	117060985	117060985	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.1660	p.R554C	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	61	0	0	37	29	43.94	-	-	-	T	117060985	C	T	117060985	3	4	240	1	0	0	0	0	1	0	0	0	14392	768	27	1	1663	1	SIDT2	11	117060985	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	233223	117060985	17945531	2609	21459										
SIDT2	0	genome.wustl.edu	37	chr11	117062706	117062706	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacgcctgcctggccattgtCatcttcttctctgtgctggg	10	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	117062706	117062706	C	G	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.1911	p.V637	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	77	0	0	64	13	16.88	-	-	-	G	117062706	C	G	117062706	2	3	240	1	0	0	0	0	0	0	0	1	14392	813	29	2		2	SIDT2	11	117062706	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1721	117062706	17943810	2610	21460										
PCSK7	0	genome.wustl.edu	37	chr11	117077851	117077851	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagctgccattgccggagGatgccgacctggaatgactc	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	117077851	117077851	G	A	SNP	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	silent	c.1812	p.I604	0.846	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	95	0	0	70	29	29.29	-	-	-	A	117077851	G	A	117077851	2	1	240	1	0	0	0	0	0	0	0	1	11678	1164	41	2		2	PCSK7	11	117077851	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15145	117077851	17928665	2611	21461										
CEP164	0	genome.wustl.edu	37	chr11	117232564	117232564	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcacaggccttgggttcctCattagccccagttcatgttc	9	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	117232564	117232564	C	T	SNP	CEP164	ENST00000278935	human	ensembl	69_37n	1	known	missense	c.407	p.S136L	0.981	NULL	superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	CEP164	HGNC	ENSG00000110274	94	0	0	79	28	26.17	-	-	-	T	117232564	C	T	117232564	3	4	240	1	0	0	0	0	1	0	0	0	3278	838	29	2	421	2	CEP164	11	117232564	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	154713	117232564	17773952	2612	21462										
IL10RA	0	genome.wustl.edu	37	chr11	117869438	117869438	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcttccccagctcttcaaGaagcccagccccttcatctt	4	18	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	117869438	117869438	G	A	SNP	IL10RA	ENST00000227752	human	ensembl	69_37n	1	known	silent	c.819	p.K273	0.088	NULL	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324	77	0	0	53	16	23.19	-	-	-	A	117869438	G	A	117869438	2	1	240	1	0	0	0	0	0	0	0	1	7674	933	33	2		2	IL10RA	11	117869438	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	636874	117869438	17137078	2613	21463										
MLL	0	genome.wustl.edu	37	chr11	118376746	118376746	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtaccccagatattggctCaataagcaatcttttaatca	6	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	118376746	118376746	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.10130	p.S3377L	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	33	0	0	22	9	29.03	-	-	-	T	118376746	C	T	118376746	3	4	240	1	0	0	0	0	1	0	0	0	9691	838	29	2	10236	2	MLL	11	118376746	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	507308	118376746	16629770	2614	21464										
CXCR5	0	genome.wustl.edu	37	chr11	118764307	118764307	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctccttgcccttgcagttCtgggaactggacagattgga	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	118764307	118764307	C	T	SNP	CXCR5	ENST00000292174	human	ensembl	69_37n	1	known	silent	c.54	p.F18	0.288	prints_Chemokine_CXCR5	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR5,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_ATII_rcpt	-	no_errors	CXCR5	HGNC	ENSG00000160683	24	0	0	24	14	36.84	-	-	-	T	118764307	C	T	118764307	2	4	240	1	0	0	0	0	0	0	0	1	4125	912	32	2		2	CXCR5	11	118764307	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	387561	118764307	16242209	2615	21465										
VPS11	0	genome.wustl.edu	37	chr11	118940045	118940045	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagaagatgaagagggcatCaaccccttggtgagtcccag	14	9	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	118940045	118940045	C	G	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	30	0	0	40	17	29.82	-	-	-	G	118940045	C	G	118940045	1	3	240	0	1	0	0	0	0	0	0	0	17285	838	29	2		2	VPS11	11	118940045	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175738	118940045	16066471	2616	21466										
VPS11	0	genome.wustl.edu	37	chr11	118942376	118942376	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggttgtggcctgcgctgctCagccctaagtgacccttctc	11	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	118942376	118942376	C	G	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	104	1	0.93	74	31	29.52	-	-	-	G	118942376	C	G	118942376	1	3	240	0	1	0	0	0	0	0	0	0	17285	838	29	2		2	VPS11	11	118942376	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2331	118942376	16064140	2617	21467										
ABCG4	0	genome.wustl.edu	37	chr11	119029033	119029033	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaccttcctgtccatcctCagggacacggtgaggcgtca	12	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	119029033	119029033	C	T	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	silent	c.1158	p.L386	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	57	0	0	62	22	26.19	-	-	-	T	119029033	C	T	119029033	2	4	240	1	0	0	0	0	0	0	0	1	70	813	29	2		2	ABCG4	11	119029033	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86657	119029033	15977483	2618	21468										
NLRX1	0	genome.wustl.edu	37	chr11	119045285	119045285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagctctacttccagctcCgcctcaaccagccgtactgc	7	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	119045285	119045285	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	missense	c.973	p.R325C	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	51	0	0	24	15	38.46	-	-	-	T	119045285	C	T	119045285	3	4	240	1	0	0	0	0	1	0	0	0	10557	652	23	1	991	1	NLRX1	11	119045285	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16252	119045285	15961231	2619	21469										
CCDC153	0	genome.wustl.edu	37	chr11	119061433	119061433	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttacgtgtaagatttcctCatacttcgcctccatgtctg	7	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	119061433	119061433	C	T	SNP	CCDC153	ENST00000415318	human	ensembl	69_37n	-1	known	missense	c.466	p.E156K	0.952	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	CCDC153	HGNC	ENSG00000248712	44	0	0	39	12	23.53	-	-	-	T	119061433	C	T	119061433	3	4	240	1	0	0	0	0	1	0	0	0	2813	835	29	2	174	2	CCDC153	11	119061433	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16148	119061433	15945083	2620	21470										
TRIM29	0	genome.wustl.edu	37	chr11	119988996	119988996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtcagagttctgaatgctgGaggagtactcccagacccgg	13	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	119988996	119988996	G	A	SNP	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	missense	c.1562	p.S521F	0.650	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	87	0	0	58	28	32.56	-	-	-	A	119988996	G	A	119988996	3	1	240	1	0	0	0	0	1	0	0	0	16599	1174	41	2	216	2	TRIM29	11	119988996	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	927563	119988996	15017520	2621	21471										
TECTA	0	genome.wustl.edu	37	chr11	121008252	121008252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggatgtcagtgtgatgagGgctatgctctactgggcagc	16	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	121008252	121008252	G	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.3064	p.G1022C	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	67	0	0	47	44	48.35	-	-	-	T	121008252	G	T	121008252	3	4	240	1	0	0	0	0	1	0	0	0	15842	1232	43	4	3102	4	TECTA	11	121008252	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1019256	121008252	13998264	2622	21472										
SORL1	0	genome.wustl.edu	37	chr11	121425982	121425982	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctttggcttttgaacccctCagccagctgctttactgggt	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	121425982	121425982	C	T	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.2526	p.L842	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	113	0	0	31	46	59.74	-	-	-	T	121425982	C	T	121425982	2	4	240	1	0	0	0	0	0	0	0	1	15023	813	29	2		2	SORL1	11	121425982	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	417730	121425982	13580534	2623	21473										
UBASH3B	0	genome.wustl.edu	37	chr11	122672027	122672027	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcagccaacctgagtgttGatacaacctacaggtaagcc	9	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	122672027	122672027	G	A	SNP	UBASH3B	ENST00000284273	human	ensembl	69_37n	1	known	missense	c.1582	p.D528N	1.000	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127	57	0	0	42	31	42.47	-	-	-	A	122672027	G	A	122672027	3	1	240	1	0	0	0	0	1	0	0	0	16937	1290	45	2	1624	2	UBASH3B	11	122672027	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1246045	122672027	12334489	2624	21474										
CRTAM	0	genome.wustl.edu	37	chr11	122738259	122738259	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagcacatgtgatatggaaGaaaggtcagtgggcagggaa	15	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	122738259	122738259	G	C	SNP	CRTAM	ENST00000227348	human	ensembl	69_37n	1	known	missense	c.960	p.K320N	0.881	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CRTAM	HGNC	ENSG00000109943	108	0	0	58	56	49.12	-	-	-	C	122738259	G	C	122738259	3	2	240	1	0	0	0	0	1	0	0	0	3927	933	33	2	990	2	CRTAM	11	122738259	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	66232	122738259	12268257	2625	21475										
HSPA8	0	genome.wustl.edu	37	chr11	122931962	122931962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcaattatctcgacttttCcgtgctggaaaacacccaca	7	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	122931962	122931962	C	T	SNP	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	missense	c.71	p.G24E	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	81	0	0	78	20	20.41	-	-	-	T	122931962	C	T	122931962	3	4	240	1	0	0	0	0	1	0	0	0	7469	855	30	2	1901	2	HSPA8	11	122931962	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	193703	122931962	12074554	2626	21476										
SCN3B	0	genome.wustl.edu	37	chr11	123516351	123516351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccaccaccgtggtggcctCcacctcctctctcttcatgc	6	19	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	123516351	123516351	C	T	SNP	SCN3B	ENST00000299333	human	ensembl	69_37n	-1	known	missense	c.163	p.E55K	0.983	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN3B	HGNC	ENSG00000166257	56	0	0	56	10	15.15	-	-	-	T	123516351	C	T	123516351	3	4	240	1	0	0	0	0	1	0	0	0	14007	864	30	2	500	2	SCN3B	11	123516351	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	584389	123516351	11490165	2627	21477										
OR8B2	0	genome.wustl.edu	37	chr11	124253080	124253080	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacattggtgtgtggaggtGagaatttagaccgaaaagag	15	3	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	124253080	124253080	G	C	SNP	OR8B2	ENST00000375013	human	ensembl	69_37n	-1	known	missense	c.160	p.H54D	0.615	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293	161	0	0	104	37	26.24	-	-	-	C	124253080	G	C	124253080	3	2	240	1	0	0	0	0	1	0	0	0	11300	1290	45	2	784	2	OR8B2	11	124253080	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	736729	124253080	10753436	2628	21478										
TBRG1	0	genome.wustl.edu	37	chr11	124501208	124501208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgatgtgtgcaaacctggaGatgggcagctacctgagggg	16	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	124501208	124501208	G	A	SNP	TBRG1	ENST00000441174	human	ensembl	69_37n	1	known	missense	c.985	p.D329N	1.000	NULL	pfam_FYrich_N,pfam_FYrich_C,smart_FYrich_N,smart_FYrich_C	-	no_errors	TBRG1	HGNC	ENSG00000154144	106	0	0	42	46	52.27	-	-	-	A	124501208	G	A	124501208	3	1	240	1	0	0	0	0	1	0	0	0	15743	942	33	2	1015	2	TBRG1	11	124501208	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	248128	124501208	10505308	2629	21479										
ROBO3	0	genome.wustl.edu	37	chr11	124739441	124739441	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccccccgcggccacccgGagccttccgtgtcctggagg	13	19	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	124739441	124739441	G	C	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.583	p.E195Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	32	0	0	9	16	64	-	-	-	C	124739441	G	C	124739441	3	2	240	1	0	0	0	0	1	0	0	0	13601	1175	41	2	593	2	ROBO3	11	124739441	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	238233	124739441	10267075	2630	21480										
CCDC15	0	genome.wustl.edu	37	chr11	124875068	124875068	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgagagagaacaagttaaaGaacaacaaaggcaaaaagaa	9	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	124875068	124875068	G	C	SNP	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	missense	c.2371	p.E791Q	1.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	83	0	0	40	17	29.82	-	-	-	C	124875068	G	C	124875068	3	2	240	1	0	0	0	0	1	0	0	0	2809	943	33	2	2417	2	CCDC15	11	124875068	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	135627	124875068	10131448	2631	21481										
SLC37A2	0	genome.wustl.edu	37	chr11	124955534	124955534	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgggctggaacaatgtcttCtacatgctcatctctgccga	9	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	124955534	124955534	C	G	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	missense	c.1389	p.F463L	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	43	0	0	32	13	28.89	-	-	-	G	124955534	C	G	124955534	3	3	240	1	0	0	0	0	1	0	0	0	14687	912	32	2	1451	2	SLC37A2	11	124955534	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	80466	124955534	10050982	2632	21482										
FEZ1	0	genome.wustl.edu	37	chr11	125333431	125333431	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataccggaatcattttcactCttctcattgaactcttcctc	3	13	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	125333431	125333431	C	G	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	missense	c.447	p.K149N	1.000	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	139	0	0	101	31	23.48	-	-	-	G	125333431	C	G	125333431	3	3	240	1	0	0	0	0	1	0	0	0	5869	912	32	2	759	2	FEZ1	11	125333431	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	377897	125333431	9673085	2633	21483										
CHEK1	0	genome.wustl.edu	37	chr11	125496685	125496685	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggcagtgccctttgtggaaGactgggacttggtgcaaacc	14	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	125496685	125496685	G	A	SNP	CHEK1	ENST00000438015	human	ensembl	69_37n	1	known	missense	c.22	p.D8N	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554	249	0	0	123	130	51.38	-	-	-	A	125496685	G	A	125496685	3	1	240	1	0	0	0	0	1	0	0	0	3363	942	33	2	24	2	CHEK1	11	125496685	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	163254	125496685	9509831	2634	21484										
CDON	0	genome.wustl.edu	37	chr11	125848245	125848245	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttaacacactccagagggtCaatctgaggcacggccgtgt	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	125848245	125848245	C	G	SNP	CDON	ENST00000392693	human	ensembl	69_37n	-1	known	missense	c.3310	p.D1104H	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CDON	HGNC	ENSG00000064309	73	0	0	61	20	24.69	-	-	-	G	125848245	C	G	125848245	3	3	240	1	0	0	0	0	1	0	0	0	3199	826	29	2	496	2	CDON	11	125848245	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	351560	125848245	9158271	2635	21485										
DCPS	0	genome.wustl.edu	37	chr11	126201380	126201380	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggacctccgcctgatccgaGagacgggagatgactacagg	14	11	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	126201380	126201380	G	C	SNP	DCPS	ENST00000263579	human	ensembl	69_37n	1	known	missense	c.457	p.E153Q	1.000	superfamily_HIT-like,pirsf_Scavenger_mRNA_decap_enz	pfam_Scavenger_mRNA_decap_enz,superfamily_HIT-like,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_Scavenger_mRNA_decap_enz	-	no_errors	DCPS	HGNC	ENSG00000110063	42	0	0	26	15	36.59	-	-	-	C	126201380	G	C	126201380	3	2	240	1	0	0	0	0	1	0	0	0	4332	943	33	2	467	2	DCPS	11	126201380	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	353135	126201380	8805136	2636	21486										
KCNJ1	0	genome.wustl.edu	37	chr11	128710027	128710027	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tataaaccttgactgtgcctCcacattgccaaattctatgt	5	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	128710027	128710027	C	G	SNP	KCNJ1	ENST00000392664	human	ensembl	69_37n	-1	known	missense	c.169	p.E57Q	0.945	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ1	HGNC	ENSG00000151704	82	0	0	49	48	49.48	-	-	-	G	128710027	C	G	128710027	3	3	240	1	0	0	0	0	1	0	0	0	8097	864	30	2	1010	2	KCNJ1	11	128710027	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2508647	128710027	6296489	2637	21487										
ADAMTS8	0	genome.wustl.edu	37	chr11	130281431	130281431	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtgaaaactgtactcctCctccacaggtccgagaacat	9	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	130281431	130281431	C	G	SNP	ADAMTS8	ENST00000257359	human	ensembl	69_37n	-1	known	missense	c.1631	p.G544A	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917	71	0	0	52	15	22.39	-	-	-	G	130281431	C	G	130281431	3	3	240	1	0	0	0	0	1	0	0	0	272	855	30	2	1054	2	ADAMTS8	11	130281431	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1571404	130281431	4725085	2638	21488										
SNX19	0	genome.wustl.edu	37	chr11	130776528	130776528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggttcttaccacattgcCttcctggagacaataaagaa	7	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	130776528	130776528	C	G	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.2254	p.G752R	0.996	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	133	0	0	85	23	21.3	-	-	-	G	130776528	C	G	130776528	3	3	240	1	0	0	0	0	1	0	0	0	14979	681	24	4	748	4	SNX19	11	130776528	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	495097	130776528	4229988	2639	21489										
GLB1L3	0	genome.wustl.edu	37	chr11	134182722	134182722	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttgcaggtgtttttggatGagacaatgatagggattctg	13	3	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	134182722	134182722	G	A	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.1441	p.E481K	0.179	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	117	0	0	102	28	21.54	-	-	-	A	134182722	G	A	134182722	3	1	240	1	0	0	0	0	1	0	0	0	6482	1291	45	2	1499	2	GLB1L3	11	134182722	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3406194	134182722	823794	2640	21490										
GLB1L2	0	genome.wustl.edu	37	chr11	134217273	134217273	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaacttacaagggcttcacCgaagcagtggacctttattt	8	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	11	134217273	134217273	C	T	SNP	GLB1L2	ENST00000525089	human	ensembl	69_37n	1	putative	nonsense	c.319	p.R107*	0.000	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLB1L2	HGNC	ENSG00000149328	81	0	0	51	42	45.16	-	-	-	T	134217273	C	T	134217273	4	4	240	1	0	0	0	0	0	1	0	0	6481	639	23	1	522	1	GLB1L2	11	134217273	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34551	134217273	789243	2641	21491										
B4GALNT3	0	genome.wustl.edu	37	chr12	666818	666818	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaattcatcaaagacatgGaaaacctgttccaggtcacc	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	666818	666818	G	T	SNP	B4GALNT3	ENST00000266383	human	ensembl	69_37n	1	known	nonsense	c.2425	p.E809*	1.000	pfam_Chond_GalNAc	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044	21	0	0	21	12	36.36	-	-	-	T	666818	G	T	666818	4	4	240	1	0	0	0	0	0	1	0	0	1272	1175	41	2	2487	2	B4GALNT3	12	666818	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		666818	133185077	2642	21492										
WNK1	0	genome.wustl.edu	37	chr12	936424	936424	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcttttgccaagagtgtGataggtatgtttcaggtgta	12	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	936424	936424	G	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.1149	p.V383	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	83	0	0	43	16	27.12	-	-	-	C	936424	G	C	936424	2	2	240	1	0	0	0	0	0	0	0	1	17474	1277	45	2		2	WNK1	12	936424	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	269606	936424	132915471	2643	21493										
WNK1	0	genome.wustl.edu	37	chr12	939177	939177	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttaatttaaggtaccccaGagttcatggcccctgagatg	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	939177	939177	G	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.1162	p.E388Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	154	0	0	56	31	35.63	-	-	-	C	939177	G	C	939177	3	2	240	1	0	0	0	0	1	0	0	0	17474	943	33	2	1176	2	WNK1	12	939177	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2753	939177	132912718	2644	21494										
C12orf4	0	genome.wustl.edu	37	chr12	4626232	4626232	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagttttacccaccaagtGattctttcaatttactcctg	6	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	4626232	4626232	G	C	SNP	C12orf4	ENST00000261250	human	ensembl	69_37n	-1	known	nonsense	c.1157	p.S386*	0.099	pfam_DUF2362	pfam_DUF2362	-	no_errors	C12orf4	HGNC	ENSG00000047621	115	0	0	50	19	27.54	-	-	-	C	4626232	G	C	4626232	4	2	240	1	0	0	0	0	0	1	0	0	1697	1294	45	2	525	2	C12orf4	12	4626232	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3687055	4626232	129225663	2645	21495										
GALNT8	0	genome.wustl.edu	37	chr12	4874619	4874619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagtgctagtgatcgctgCctgacagaccctggcaaggc	13	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	4874619	4874619	C	T	SNP	GALNT8	ENST00000535354	human	ensembl	69_37n	1	putative	missense	c.155	p.A52V	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GALNT8	HGNC	ENSG00000130035	98	0	0	41	23	35.94	-	-	-	T	4874619	C	T	4874619	3	4	240	1	0	0	0	0	1	0	0	0	6269	747	26	4	1706	4	GALNT8	12	4874619	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	248387	4874619	128977276	2646	21496										
ANO2	0	genome.wustl.edu	37	chr12	6031933	6031933	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctggaccctgcctgaggGctcagccggcgtggggagcc	16	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6031933	6031933	G	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.48	p.S16R	0.930	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	27	0	0	17	8	30.77	-	-	-	T	6031933	G	T	6031933	3	4	240	1	0	0	0	0	1	0	0	0	696	1194	42	4	3048	4	ANO2	12	6031933	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1157314	6031933	127819962	2647	21497										
SCNN1A	0	genome.wustl.edu	37	chr12	6457910	6457910	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccgtgacagagggagactCagaattggttttgtagttca	12	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6457910	6457910	C	G	SNP	SCNN1A	ENST00000358945	human	ensembl	69_37n	-1	known	missense	c.1678	p.E560Q	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1A	HGNC	ENSG00000111319	36	0	0	19	16	45.71	-	-	-	G	6457910	C	G	6457910	3	3	240	1	0	0	0	0	1	0	0	0	14015	835	29	2	405	2	SCNN1A	12	6457910	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	425977	6457910	127393985	2648	21498										
SCNN1A	0	genome.wustl.edu	37	chr12	6483783	6483783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagaactcgaagagctctCggtaggagcggtggaactcg	15	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6483783	6483783	C	T	SNP	SCNN1A	ENST00000358945	human	ensembl	69_37n	-1	known	missense	c.167	p.R56Q	0.985	tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1A	HGNC	ENSG00000111319	43	0	0	35	8	18.6	-	-	-	T	6483783	C	T	6483783	3	4	240	1	0	0	0	0	1	0	0	0	14015	884	31	1	1890	1	SCNN1A	12	6483783	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25873	6483783	127368112	2649	21499										
LTBR	0	genome.wustl.edu	37	chr12	6497587	6497587	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgctgatgctggccgttCtgctgccactggccttcttt	10	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6497587	6497587	C	G	SNP	LTBR	ENST00000228918	human	ensembl	69_37n	1	known	missense	c.691	p.L231V	0.978	pirsf_TNFR_3_LTBR	pirsf_TNFR_3_LTBR,pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_3_LTBR,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LTBR	HGNC	ENSG00000111321	96	0	0	44	20	31.25	-	-	-	G	6497587	C	G	6497587	3	3	240	1	0	0	0	0	1	0	0	0	9143	912	32	2	717	2	LTBR	12	6497587	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13804	6497587	127354308	2650	21500										
CHD4	0	genome.wustl.edu	37	chr12	6692457	6692457	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagatcttcttgctgctgctCataatggtgccgcagcaatt	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6692457	6692457	C	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.3967	p.E1323Q	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	159	0	0	77	26	25.24	-	-	-	G	6692457	C	G	6692457	3	3	240	1	0	0	0	0	1	0	0	0	3356	835	29	2	1831	2	CHD4	12	6692457	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	194870	6692457	127159438	2651	21501										
TPI1	0	genome.wustl.edu	37	chr12	6979278	6979278	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctctgatgcggtggctcaGagcacccgtatcatttatgg	12	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	6979278	6979278	G	A	SNP	TPI1	ENST00000229270	human	ensembl	69_37n	1	known	silent	c.720	p.Q240	1.000	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669	80	0	0	44	20	31.25	-	-	-	A	6979278	G	A	6979278	2	1	240	1	0	0	0	0	0	0	0	1	16499	933	33	2		2	TPI1	12	6979278	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	286821	6979278	126872617	2652	21502										
ATN1	0	genome.wustl.edu	37	chr12	7048312	7048312	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatccactcgcacctgcaCctgcaccagcaagatgctat	6	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	7048312	7048312	C	G	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.3186	p.H1062Q	0.998	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	35	0	0	21	7	25	-	-	-	G	7048312	C	G	7048312	3	3	240	1	0	0	0	0	1	0	0	0	1115	506	18	4	3208	4	ATN1	12	7048312	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69034	7048312	126803583	2653	21503										
CLSTN3	0	genome.wustl.edu	37	chr12	7301655	7301655	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacgccccccagatcctgctGagtggcactgctcattttgc	10	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	7301655	7301655	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	silent	c.1935	p.L645	0.998	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	38	0	0	25	16	39.02	-	-	-	A	7301655	G	A	7301655	2	1	240	1	0	0	0	0	0	0	0	1	3593	1277	45	2		2	CLSTN3	12	7301655	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	253343	7301655	126550240	2654	21504										
CD163L1	0	genome.wustl.edu	37	chr12	7525937	7525937	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcacatgtgatccaggtctCttctgctgggctggagattc	11	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	7525937	7525937	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.3709	p.E1237K	0.301	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	55	0	0	26	12	31.58	-	-	-	T	7525937	C	T	7525937	3	4	240	1	0	0	0	0	1	0	0	0	2997	922	32	2	676	2	CD163L1	12	7525937	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	224282	7525937	126325958	2655	21505										
CD163L1	0	genome.wustl.edu	37	chr12	7586195	7586195	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtagtgttccacccatcatCacacacagtcccccactgtc	5	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	7586195	7586195	C	A	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.220	p.D74Y	0.998	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	79	0	0	41	17	29.31	-	-	-	A	7586195	C	A	7586195	3	1	240	1	0	0	0	0	1	0	0	0	2997	826	29	2	4209	2	CD163L1	12	7586195	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60258	7586195	126265700	2656	21506										
DPPA3	0	genome.wustl.edu	37	chr12	7869636	7869636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatccttctgagaatgctaGaatagggaatcaagacacca	10	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	7869636	7869636	G	C	SNP	DPPA3	ENST00000345088	human	ensembl	69_37n	1	known	missense	c.443	p.R148T	0.000	NULL	NULL	-	no_errors	DPPA3	HGNC	ENSG00000187569	100	0	0	49	17	25.76	-	-	-	C	7869636	G	C	7869636	3	2	240	1	0	0	0	0	1	0	0	0	4770	942	33	2	457	2	DPPA3	12	7869636	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	283441	7869636	125982259	2657	21507										
CLEC6A	0	genome.wustl.edu	37	chr12	8628773	8628773	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttattttctggggctttCagacccacaaggtaataata	7	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	8628773	8628773	C	T	SNP	CLEC6A	ENST00000382073	human	ensembl	69_37n	1	known	missense	c.422	p.S141L	0.928	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC6A	HGNC	ENSG00000205846	93	0	0	33	23	41.07	-	-	-	T	8628773	C	T	8628773	3	4	240	1	0	0	0	0	1	0	0	0	3550	838	29	2	440	2	CLEC6A	12	8628773	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	759137	8628773	125223122	2658	21508										
KLRB1	0	genome.wustl.edu	37	chr12	9747966	9747966	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactcagaatacacagatgtCtgtgagatggaaatacagct	9	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	9747966	9747966	C	T	SNP	KLRB1	ENST00000229402	human	ensembl	69_37n	-1	known	silent	c.582	p.Q194	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRB1	HGNC	ENSG00000111796	161	1	0.62	61	32	34.41	-	-	-	T	9747966	C	T	9747966	2	4	240	1	0	0	0	0	0	0	0	1	8467	912	32	2		2	KLRB1	12	9747966	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1119193	9747966	124103929	2659	21509										
CLEC2D	0	genome.wustl.edu	37	chr12	9840572	9840572	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaaagctggattggttttCaaagaaagtgtttctatttt	9	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	9840572	9840572	C	T	SNP	CLEC2D	ENST00000261340	human	ensembl	69_37n	1	known	nonsense	c.247	p.Q83*	0.000	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493	84	0	0	28	21	42.86	-	-	-	T	9840572	C	T	9840572	4	4	240	1	0	0	0	0	0	1	0	0	3538	827	29	2	257	2	CLEC2D	12	9840572	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92606	9840572	124011323	2660	21510										
PRB1	0	genome.wustl.edu	37	chr12	11507489	11507489	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agattcttcctggctgacatCtagaagagaagcacaggatg	11	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	11507489	11507489	C	G	SNP	PRB1	ENST00000500254	human	ensembl	69_37n	-1	known	splice_site	c.65-1	e2-1	0.155	-	-	-	no_errors	PRB1	HGNC	ENSG00000251655	153	0	0	94	24	20.34	-	-	-	G	11507489	C	G	11507489	5	3	240	1	0	0	0	0	0	0	1	0	12523	927	32	2	939	2	PRB1	12	11507489	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1666917	11507489	122344406	2661	21511										
PTPRO	0	genome.wustl.edu	37	chr12	15652375	15652375	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taattgattttctcttcacaGatttctttaagggaaaaaca	5	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	15652375	15652375	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	splice_site	c.509-1	e4-1	1.000	-	-	-	no_errors	PTPRO	HGNC	ENSG00000151490	97	0	0	39	13	25	-	-	-	T	15652375	G	T	15652375	5	4	240	1	0	0	0	0	0	0	1	0	12892	956	33	2	522	2	PTPRO	12	15652375	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4144886	15652375	118199520	2662	21512										
PLEKHA5	0	genome.wustl.edu	37	chr12	19501417	19501417	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaatggagaagaaaaatcaGaacctgtttcagagatagaa	9	5	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	19501417	19501417	G	C	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	missense	c.2674	p.E892Q	1.000	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	74	0	0	36	22	37.93	-	-	-	C	19501417	G	C	19501417	3	2	240	1	0	0	0	0	1	0	0	0	12133	943	33	2	2877	2	PLEKHA5	12	19501417	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3849042	19501417	114350478	2663	21513										
PLEKHA5	0	genome.wustl.edu	37	chr12	19512388	19512388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactggacactgccattagaGaaaatgatgtaaagccagac	9	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	19512388	19512388	G	C	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	missense	c.3082	p.E1028Q	0.887	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	108	0	0	44	29	39.73	-	-	-	C	19512388	G	C	19512388	3	2	240	1	0	0	0	0	1	0	0	0	12133	943	33	2	3297	2	PLEKHA5	12	19512388	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10971	19512388	114339507	2664	21514										
PDE3A	0	genome.wustl.edu	37	chr12	20787910	20787910	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgacattgtacagaatgaaGatgaaacagagtgcctgaga	12	5	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	20787910	20787910	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.1921	p.D641N	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	109	0	0	50	27	35.06	-	-	-	A	20787910	G	A	20787910	3	1	240	1	0	0	0	0	1	0	0	0	11710	942	33	2	1951	2	PDE3A	12	20787910	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1275522	20787910	113063985	2665	21515										
PDE3A	0	genome.wustl.edu	37	chr12	20807049	20807049	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgggtggaagacagcgatGagtcaggagatactgatgac	15	5	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	20807049	20807049	G	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	nonsense	c.3094	p.E1032*	0.993	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	97	0	0	43	36	45.57	-	-	-	T	20807049	G	T	20807049	4	4	240	1	0	0	0	0	0	1	0	0	11710	1291	45	2	3152	2	PDE3A	12	20807049	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19139	20807049	113044846	2666	21516										
SLCO1C1	0	genome.wustl.edu	37	chr12	20874912	20874912	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctctgagaaatccaagtTtattatagatgatcacacag	6	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	20874912	20874912	T	C	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.950	p.F317S	1.000	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	75	0	0	36	21	36.84	-	-	-	C	20874912	T	C	20874912	3	2	240	1	0	0	0	0	1	0	0	0	14814	1841	64	5	976	5	SLCO1C1	12	20874912	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	67863	20874912	112976983	2667	21517										
SLCO1A2	0	genome.wustl.edu	37	chr12	21450344	21450344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaacaaacatacccattaGaaagattgcatctgaagatg	6	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	21450344	21450344	G	C	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	missense	c.1069	p.L357V	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	99	0	0	41	13	24.07	-	-	-	C	21450344	G	C	21450344	3	2	240	1	0	0	0	0	1	0	0	0	14811	933	33	2	971	2	SLCO1A2	12	21450344	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	575432	21450344	112401551	2668	21518										
IAPP	0	genome.wustl.edu	37	chr12	21531360	21531360	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaattacttgcccctttaGaggacaatgtaactctatag	7	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	21531360	21531360	G	C	SNP	IAPP	ENST00000535428	human	ensembl	69_37n	1	novel	missense	c.257	p.86T	0.925	NULL	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Pro-islet_amyloid_polypep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IAPP	HGNC	ENSG00000121351	58	0	0	29	11	27.5	-	-	-	C	21531360	G	C	21531360	3	2	240	1	0	0	0	0	1	0	0	0	7526	937	33	2	276	2	IAPP	12	21531360	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81016	21531360	112320535	2669	21519										
CASC1	0	genome.wustl.edu	37	chr12	25297459	25297459	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacaagctcagttactgcaGaagtgtattcttttgatggt	10	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	25297459	25297459	G	A	SNP	CASC1	ENST00000395987	human	ensembl	69_37n	-1	known	missense	c.842	p.S281F	0.000	pfam_Casc1_domain	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307	176	0	0	79	36	31.3	-	-	-	A	25297459	G	A	25297459	3	1	240	1	0	0	0	0	1	0	0	0	2685	942	33	2	1358	2	CASC1	12	25297459	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3766099	25297459	108554436	2670	21520										
BHLHE41	0	genome.wustl.edu	37	chr12	26275892	26275892	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgccggtgcctttgctcaGagggacctgttgagtcaaca	13	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	26275892	26275892	G	C	SNP	BHLHE41	ENST00000242728	human	ensembl	69_37n	-1	known	missense	c.556	p.L186V	0.012	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	BHLHE41	HGNC	ENSG00000123095	20	0	0	5	6	54.55	-	-	-	C	26275892	G	C	26275892	3	2	240	1	0	0	0	0	1	0	0	0	1429	933	33	2	896	2	BHLHE41	12	26275892	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	978433	26275892	107576003	2671	21521										
ITPR2	0	genome.wustl.edu	37	chr12	26752196	26752196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcaatgcagtgcacaaagTgttgtacaactctctcgcta	7	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	26752196	26752196	T	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.3884	p.H1295R	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	146	0	0	45	34	43.04	-	-	-	C	26752196	T	C	26752196	3	2	240	1	0	0	0	0	1	0	0	0	7975	1696	59	5	4333	5	ITPR2	12	26752196	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	476304	26752196	107099699	2672	21522										
PPFIBP1	0	genome.wustl.edu	37	chr12	27844717	27844717	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttagcaattttgggaatttGagaaagaagaaacaggaaga	11	2	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	27844717	27844717	G	C	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	missense	c.2739	p.L913F	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	73	0	0	29	19	39.58	-	-	-	C	27844717	G	C	27844717	3	2	240	1	0	0	0	0	1	0	0	0	12386	1281	45	2	2865	2	PPFIBP1	12	27844717	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1092521	27844717	106007178	2673	21523										
OVCH1	0	genome.wustl.edu	37	chr12	29604478	29604478	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaaaagcctctaggctttTctagctctgcttcagagcaa	8	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	29604478	29604478	T	G	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	missense	c.2555	p.E852A	0.003	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	51	0	0	47	35	42.68	-	-	-	G	29604478	T	G	29604478	3	3	240	1	0	0	0	0	1	0	0	0	11396	1783	62	5	877	5	OVCH1	12	29604478	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1759761	29604478	104247417	2674	21524										
CAPRIN2	0	genome.wustl.edu	37	chr12	30873795	30873795	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcagatccagaagaagcctGatcggtagtaaccaagcaag	10	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	30873795	30873795	G	A	SNP	CAPRIN2	ENST00000251071	human	ensembl	69_37n	-1	known	nonsense	c.2098	p.Q700*	1.000	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	90	0	0	58	10	14.71	-	-	-	A	30873795	G	A	30873795	4	1	240	1	0	0	0	0	0	1	0	0	2661	1299	45	2	1313	2	CAPRIN2	12	30873795	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1269317	30873795	102978100	2675	21525										
DDX11	0	genome.wustl.edu	37	chr12	31254835	31254835	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggggtggtctgtttcttCccctcctacgagtacctgcg	13	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	31254835	31254835	C	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.2121	p.F707L	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	200	0	0	226	45	16.54	-	-	-	A	31254835	C	A	31254835	3	1	240	1	0	0	0	0	1	0	0	0	4374	854	30	2	2199	2	DDX11	12	31254835	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	381040	31254835	102597060	2676	21526										
DENND5B	0	genome.wustl.edu	37	chr12	31613157	31613157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagttctagtttagaacggtCagttccttcttttgactgaa	8	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	31613157	31613157	C	T	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.1168	p.D390N	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	95	0	0	65	14	17.72	-	-	-	T	31613157	C	T	31613157	3	4	240	1	0	0	0	0	1	0	0	0	4473	826	29	2	2833	2	DENND5B	12	31613157	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	358322	31613157	102238738	2677	21527										
PKP2	0	genome.wustl.edu	37	chr12	32955377	32955377	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agattccgggacagattcctCagcagcgagatggctgtctt	12	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	32955377	32955377	C	T	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	silent	c.2259	p.L753	0.999	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	60	0	0	68	22	24.44	-	-	-	T	32955377	C	T	32955377	2	4	240	1	0	0	0	0	0	0	0	1	12059	813	29	2		2	PKP2	12	32955377	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1342220	32955377	100896518	2678	21528										
ALG10B	0	genome.wustl.edu	37	chr12	38714319	38714319	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcttttggcttattccatGtcctttaaaaacttgagtat	5	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	38714319	38714319	G	T	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	1	known	missense	c.726	p.M242I	0.598	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	262	1	0.38	176	69	28.16	-	-	-	T	38714319	G	T	38714319	3	4	240	1	0	0	0	0	1	0	0	0	512	1377	48	4	736	4	ALG10B	12	38714319	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5758942	38714319	95137576	2679	21529										
KIF21A	0	genome.wustl.edu	37	chr12	39711890	39711890	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttacttatcctgctgaactGatgtgtttccctgagaaaca	7	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	39711890	39711890	G	A	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	missense	c.3893	p.S1298L	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	104	0	0	69	27	28.12	-	-	-	A	39711890	G	A	39711890	3	1	240	1	0	0	0	0	1	0	0	0	8340	1294	45	2	1171	2	KIF21A	12	39711890	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	997571	39711890	94140005	2680	21530										
LRRK2	0	genome.wustl.edu	37	chr12	40681225	40681225	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtggaagaaggaacagcctCaggcagcgatggaaattttt	13	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	40681225	40681225	C	G	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	nonsense	c.2573	p.S858*	0.133	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	102	0	0	71	15	17.44	-	-	-	G	40681225	C	G	40681225	4	3	240	1	0	0	0	0	0	1	0	0	9099	838	29	2	2651	2	LRRK2	12	40681225	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	969335	40681225	93170670	2681	21531										
LRRK2	0	genome.wustl.edu	37	chr12	40761505	40761505	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatgaagtgcaaaatttaGaaaaacacattgaagtgaga	8	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	40761505	40761505	G	C	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.7522	p.E2508Q	1.000	superfamily_WD40_repeat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	55	0	0	31	11	26.19	-	-	-	C	40761505	G	C	40761505	3	2	240	1	0	0	0	0	1	0	0	0	9099	943	33	2	7724	2	LRRK2	12	40761505	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	80280	40761505	93090390	2682	21532										
CNTN1	0	genome.wustl.edu	37	chr12	41422923	41422923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtattcaactcacaaacactCcatagaagtcccaatcccca	3	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	41422923	41422923	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2882	p.S961F	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	89	0	0	64	18	21.95	-	-	-	T	41422923	C	T	41422923	3	4	240	1	0	0	0	0	1	0	0	0	3670	855	30	2	2968	2	CNTN1	12	41422923	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	661418	41422923	92428972	2683	21533										
ADAMTS20	0	genome.wustl.edu	37	chr12	43822244	43822244	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccatcaaagggcgaacttCaggatcacagtaattctcat	7	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	43822244	43822244	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3745	p.E1249K	0.986	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	53	0	0	51	14	21.54	-	-	-	T	43822244	C	T	43822244	3	4	240	1	0	0	0	0	1	0	0	0	266	835	29	2	2042	2	ADAMTS20	12	43822244	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2399321	43822244	90029651	2684	21534										
ADAMTS20	0	genome.wustl.edu	37	chr12	43846146	43846146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaccatcttcaaccatatcCttcaataggtagaaataatt	4	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	43846146	43846146	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	silent	c.2010	p.K670	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	97	0	0	57	16	21.62	-	-	-	T	43846146	C	T	43846146	2	4	240	1	0	0	0	0	0	0	0	1	266	680	24	4		4	ADAMTS20	12	43846146	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23902	43846146	90005749	2685	21535										
PUS7L	0	genome.wustl.edu	37	chr12	44148574	44148574	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgcctattgagaattcagGaggtagtccaattagctctg	10	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	44148574	44148574	G	C	SNP	PUS7L	ENST00000344862	human	ensembl	69_37n	-1	known	missense	c.475	p.P159A	0.696	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317	106	0	0	52	51	49.51	-	-	-	C	44148574	G	C	44148574	3	2	240	1	0	0	0	0	1	0	0	0	12917	1174	41	2	1662	2	PUS7L	12	44148574	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	302428	44148574	89703321	2686	21536										
NELL2	0	genome.wustl.edu	37	chr12	45173749	45173749	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgagggcggtgactgcctGagcggtaatgcagtctgact	16	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	45173749	45173749	G	C	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	nonsense	c.542	p.S181*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	48	0	0	45	15	25	-	-	-	C	45173749	G	C	45173749	4	2	240	1	0	0	0	0	0	1	0	0	10406	1294	45	2	2126	2	NELL2	12	45173749	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1025175	45173749	88678146	2687	21537										
ANO6	0	genome.wustl.edu	37	chr12	45761484	45761484	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttttagcaaagaagtttgtCatcctgatattggtggcaag	10	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	45761484	45761484	C	T	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.1012	p.H338Y	0.911	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	104	0	0	80	38	32.2	-	-	-	T	45761484	C	T	45761484	3	4	240	1	0	0	0	0	1	0	0	0	700	826	29	2	1066	2	ANO6	12	45761484	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	587735	45761484	88090411	2688	21538										
ARID2	0	genome.wustl.edu	37	chr12	46231193	46231193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaagggatagatttttaaaGatgagaggtgagttttcact	11	3	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	46231193	46231193	G	C	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.1113	p.K371N	1.000	superfamily_ARM-type_fold	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	64	0	0	51	9	15	-	-	-	C	46231193	G	C	46231193	3	2	240	1	0	0	0	0	1	0	0	0	917	933	33	2	1147	2	ARID2	12	46231193	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	469709	46231193	87620702	2689	21539										
SLC38A2	0	genome.wustl.edu	37	chr12	46758433	46758433	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatcatacccaccacaatCagaaagaacaccatacacaa	2	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	46758433	46758433	C	G	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	silent	c.699	p.L233	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	129	0	0	73	32	30.48	-	-	-	G	46758433	C	G	46758433	2	3	240	1	0	0	0	0	0	0	0	1	14693	813	29	2		2	SLC38A2	12	46758433	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	527240	46758433	87093462	2690	21540										
SLC38A4	0	genome.wustl.edu	37	chr12	47173590	47173590	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaaggagcgaaagtggaaGaataattccaacagacacaa	9	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	47173590	47173590	G	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	missense	c.631	p.L211F	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	81	0	0	68	8	10.53	-	-	-	A	47173590	G	A	47173590	3	1	240	1	0	0	0	0	1	0	0	0	14695	942	33	2	1048	2	SLC38A4	12	47173590	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	415157	47173590	86678305	2691	21541										
AMIGO2	0	genome.wustl.edu	37	chr12	47471774	47471774	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaaacacgtaaaagttttCcatctctttatccggctcta	6	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	47471774	47471774	C	A	SNP	AMIGO2	ENST00000266581	human	ensembl	69_37n	-1	known	nonsense	c.1012	p.E338*	0.966	smart_Ig_sub,pfscan_Ig-like	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMIGO2	HGNC	ENSG00000139211	90	0	0	68	15	18.07	-	-	-	A	47471774	C	A	47471774	4	1	240	1	0	0	0	0	0	1	0	0	576	864	30	2	560	2	AMIGO2	12	47471774	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	298184	47471774	86380121	2692	21542										
RAPGEF3	0	genome.wustl.edu	37	chr12	48142249	48142249	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccttacctgttgggtcatGagcactggaatctggtccca	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	48142249	48142249	G	A	SNP	RAPGEF3	ENST00000389212	human	ensembl	69_37n	-1	known	missense	c.1231	p.H411Y	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF3	HGNC	ENSG00000079337	72	0	0	79	19	19.39	-	-	-	A	48142249	G	A	48142249	3	1	240	1	0	0	0	0	1	0	0	0	13128	1290	45	2	1608	2	RAPGEF3	12	48142249	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	670475	48142249	85709646	2693	21543										
HDAC7	0	genome.wustl.edu	37	chr12	48190855	48190855	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggcgcactctcctttcgGagcagtggattcttcctccg	13	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	48190855	48190855	G	C	SNP	HDAC7	ENST00000380610	human	ensembl	69_37n	-1	known	silent	c.699	p.L233	0.824	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273	32	0	0	23	37	61.67	-	-	-	C	48190855	G	C	48190855	2	2	240	1	0	0	0	0	0	0	0	1	7063	1161	41	2		2	HDAC7	12	48190855	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48606	48190855	85661040	2694	21544										
COL2A1	0	genome.wustl.edu	37	chr12	48370913	48370913	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccgggctccagctggtcctGagggtcccatggggccttgt	15	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	48370913	48370913	G	T	SNP	COL2A1	ENST00000380518	human	ensembl	69_37n	-1	known	nonsense	c.3299	p.S1100*	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	46	0	0	48	14	22.58	-	-	-	T	48370913	G	T	48370913	4	4	240	1	0	0	0	0	0	1	0	0	3717	1294	45	2	1196	2	COL2A1	12	48370913	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	180058	48370913	85480982	2695	21545										
PFKM	0	genome.wustl.edu	37	chr12	48528606	48528606	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacacctttgtcgccgactCagcgaggtacttgcacttta	9	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	48528606	48528606	C	T	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	silent	c.741	p.L247	0.930	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	135	0	0	112	54	32.53	-	-	-	T	48528606	C	T	48528606	2	4	240	1	0	0	0	0	0	0	0	1	11839	813	29	2		2	PFKM	12	48528606	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157693	48528606	85323289	2696	21546										
ZNF641	0	genome.wustl.edu	37	chr12	48737056	48737056	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccttctgcatgcactctCtggtggctggccagatggga	13	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	48737056	48737056	C	G	SNP	ZNF641	ENST00000301042	human	ensembl	69_37n	-1	known	missense	c.1017	p.Q339H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528	80	0	0	103	32	23.7	-	-	-	G	48737056	C	G	48737056	3	3	240	1	0	0	0	0	1	0	0	0	18153	912	32	2	303	2	ZNF641	12	48737056	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	208450	48737056	85114839	2697	21547										
RHEBL1	0	genome.wustl.edu	37	chr12	49458909	49458909	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgagatggcagcgacgctCttgcccataggaattctcca	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	49458909	49458909	C	T	SNP	RHEBL1	ENST00000301068	human	ensembl	69_37n	-1	known	missense	c.529	p.E177K	0.933	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHEBL1	HGNC	ENSG00000167550	55	0	0	47	11	18.97	-	-	-	T	49458909	C	T	49458909	3	4	240	1	0	0	0	0	1	0	0	0	13413	922	32	2	26	2	RHEBL1	12	49458909	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	721853	49458909	84392986	2698	21548										
TUBA1A	0	genome.wustl.edu	37	chr12	49580464	49580464	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagcccccgtctcactgaaGaaggtgttgaaggaatcatc	10	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	49580464	49580464	G	C	SNP	TUBA1A	ENST00000301071	human	ensembl	69_37n	-1	known	missense	c.156	p.F52L	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA1A	HGNC	ENSG00000167552	126	0	0	128	31	19.5	-	-	-	C	49580464	G	C	49580464	3	2	240	1	0	0	0	0	1	0	0	0	16840	933	33	2	1211	2	TUBA1A	12	49580464	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	121555	49580464	84271431	2699	21549										
TUBA1C	0	genome.wustl.edu	37	chr12	49666927	49666927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgagttttcagaggcccgtGaggacatggctgcccttgag	15	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	49666927	49666927	G	A	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	1	known	missense	c.1267	p.E423K	1.000	superfamily_Tub_FtsZ_C,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	137	0	0	158	42	21	-	-	-	A	49666927	G	A	49666927	3	1	240	1	0	0	0	0	1	0	0	0	16842	1291	45	2	1281	2	TUBA1C	12	49666927	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	86463	49666927	84184968	2700	21550										
FAM186B	0	genome.wustl.edu	37	chr12	49998302	49998302	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacattgtccaaaatgtctGagagctgggtagaaatatcc	10	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	49998302	49998302	G	C	SNP	FAM186B	ENST00000257894	human	ensembl	69_37n	-1	known	nonsense	c.116	p.S39*	0.981	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436	35	0	0	52	12	18.75	-	-	-	C	49998302	G	C	49998302	4	2	240	1	0	0	0	0	0	1	0	0	5553	1294	45	2	2589	2	FAM186B	12	49998302	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	331375	49998302	83853593	2701	21551										
PRPF40B	0	genome.wustl.edu	37	chr12	50025642	50025642	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtcttctttgtatccataGataccaggaatggtacctcc	7	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50025642	50025642	G	C	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	splice_site	c.163-1	e3-1	1.000	-	-	-	no_errors	PRPF40B	HGNC	ENSG00000110844	59	0	0	62	17	21.52	-	-	-	C	50025642	G	C	50025642	5	2	240	1	0	0	0	0	0	0	1	0	12653	956	33	2	172	2	PRPF40B	12	50025642	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27340	50025642	83826253	2702	21552										
PRPF40B	0	genome.wustl.edu	37	chr12	50029197	50029197	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtctgggctgtggtccctGagagggatcgaaaagaggtt	17	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50029197	50029197	G	A	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	missense	c.1150	p.E384K	1.000	superfamily_FF_domain	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	62	0	0	39	25	39.06	-	-	-	A	50029197	G	A	50029197	3	1	240	1	0	0	0	0	1	0	0	0	12653	1291	45	2	1200	2	PRPF40B	12	50029197	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3555	50029197	83822698	2703	21553										
PRPF40B	0	genome.wustl.edu	37	chr12	50037942	50037942	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagctggagaggcggcggcgGacactcctacagcagctgga	17	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50037942	50037942	G	C	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	silent	c.2583	p.R861	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	94	0	0	38	53	58.24	-	-	-	C	50037942	G	C	50037942	2	2	240	1	0	0	0	0	0	0	0	1	12653	1161	41	2		2	PRPF40B	12	50037942	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8745	50037942	83813953	2704	21554										
FMNL3	0	genome.wustl.edu	37	chr12	50045782	50045782	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagaggcaggacctcctCagggggtggggctggagcca	19	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50045782	50045782	C	T	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1537	p.E513K	0.822	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	25	0	0	18	12	40	-	-	-	T	50045782	C	T	50045782	3	4	240	1	0	0	0	0	1	0	0	0	5999	835	29	2	1598	2	FMNL3	12	50045782	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7840	50045782	83806113	2705	21555										
BCDIN3D	0	genome.wustl.edu	37	chr12	50232728	50232728	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagaggagacggaattctCttgaggcatctgagcaggtt	14	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50232728	50232728	C	G	SNP	BCDIN3D	ENST00000333924	human	ensembl	69_37n	-1	known	missense	c.305	p.R102T	0.210	NULL	pfam_Bin3	-	no_errors	BCDIN3D	HGNC	ENSG00000186666	67	0	0	68	18	20.93	-	-	-	G	50232728	C	G	50232728	3	3	240	1	0	0	0	0	1	0	0	0	1361	913	32	2	577	2	BCDIN3D	12	50232728	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	186946	50232728	83619167	2706	21556										
SMARCD1	0	genome.wustl.edu	37	chr12	50484356	50484356	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccaccagaacctatcatCattaatcatgtcatcaggta	5	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50484356	50484356	C	A	SNP	SMARCD1	ENST00000394963	human	ensembl	69_37n	1	known	silent	c.1116	p.I372	1.000	superfamily_SWIB_MDM2_domain	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD1	HGNC	ENSG00000066117	95	0	0	86	21	19.63	-	-	-	A	50484356	C	A	50484356	2	1	240	1	0	0	0	0	0	0	0	1	14866	816	29	2		2	SMARCD1	12	50484356	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	251628	50484356	83367539	2707	21557										
LIMA1	0	genome.wustl.edu	37	chr12	50570855	50570855	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgcaatttgtcactcttCatcctcatcctcatcataat	2	13	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50570855	50570855	C	T	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.2275	p.E759K	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	232	0	0	214	38	15.08	-	-	-	T	50570855	C	T	50570855	3	4	240	1	0	0	0	0	1	0	0	0	8851	835	29	2	11	2	LIMA1	12	50570855	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86499	50570855	83281040	2708	21558										
LARP4	0	genome.wustl.edu	37	chr12	50822769	50822769	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatatgaagtaatgtattCttcatcttgtgaaaccacaa	6	6	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	50822769	50822769	C	G	SNP	LARP4	ENST00000429001	human	ensembl	69_37n	1	known	missense	c.236	p.S79C	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813	80	0	0	73	19	20.65	-	-	-	G	50822769	C	G	50822769	3	3	240	1	0	0	0	0	1	0	0	0	8684	913	32	2	228	2	LARP4	12	50822769	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	251914	50822769	83029126	2709	21559										
DIP2B	0	genome.wustl.edu	37	chr12	51100351	51100351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttcgtggttgggaaaatgGatggcttactgatggttagt	15	3	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	51100351	51100351	G	T	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.2437	p.D813Y	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	275	0	0	256	49	16.07	-	-	-	T	51100351	G	T	51100351	3	4	240	1	0	0	0	0	1	0	0	0	4564	1174	41	2	2519	2	DIP2B	12	51100351	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	277582	51100351	82751544	2710	21560										
DIP2B	0	genome.wustl.edu	37	chr12	51138593	51138593	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttcctagctgaccagttaGaccccatctacgtggcttat	8	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	51138593	51138593	G	C	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.4702	p.D1568H	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	71	0	0	79	19	19.39	-	-	-	C	51138593	G	C	51138593	3	2	240	1	0	0	0	0	1	0	0	0	4564	942	33	2	4852	2	DIP2B	12	51138593	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38242	51138593	82713302	2711	21561										
GALNT6	0	genome.wustl.edu	37	chr12	51770982	51770982	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccctccagcctcaccctCtgtgctggcatcatccacca	7	20	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	51770982	51770982	C	G	SNP	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	missense	c.661	p.E221Q	0.926	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	77	0	0	44	60	57.69	-	-	-	G	51770982	C	G	51770982	3	3	240	1	0	0	0	0	1	0	0	0	6267	922	32	2	1243	2	GALNT6	12	51770982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	632389	51770982	82080913	2712	21562										
SLC4A8	0	genome.wustl.edu	37	chr12	51890848	51890848	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgagctggctagatgatctCatgcctgaaagcaaaaagaa	10	8	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	51890848	51890848	C	G	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	silent	c.3021	p.L1007	0.999	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	77	0	0	82	17	17.17	-	-	-	G	51890848	C	G	51890848	2	3	240	1	0	0	0	0	0	0	0	1	14748	813	29	2		2	SLC4A8	12	51890848	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	119866	51890848	81961047	2713	21563										
SCN8A	0	genome.wustl.edu	37	chr12	52056722	52056722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaagaaaccaccaaaggccGatggcagtcatcgggaggac	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52056722	52056722	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.121	p.D41N	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	50	0	0	40	13	24.53	-	-	-	A	52056722	G	A	52056722	3	1	240	1	0	0	0	0	1	0	0	0	14012	1058	37	1	123	1	SCN8A	12	52056722	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	165874	52056722	81795173	2714	21564										
ACVR1B	0	genome.wustl.edu	37	chr12	52370122	52370122	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgactcaggtcacctcaagGagcctgagcacccgtccatg	10	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52370122	52370122	G	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	nonsense	c.343	p.E115*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	106	0	0	102	22	17.74	-	-	-	T	52370122	G	T	52370122	4	4	240	1	0	0	0	0	0	1	0	0	221	1175	41	2	353	2	ACVR1B	12	52370122	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	313400	52370122	81481773	2715	21565										
KRT82	0	genome.wustl.edu	37	chr12	52789544	52789544	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatggctcatctacttacaGatattcacgggcccgatgcc	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52789544	52789544	G	A	SNP	KRT82	ENST00000257974	human	ensembl	69_37n	-1	known	silent	c.1320	p.I440	1.000	NULL	pfam_F,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850	48	0	0	58	8	12.12	-	-	-	A	52789544	G	A	52789544	2	1	240	1	0	0	0	0	0	0	0	1	8549	956	33	2		2	KRT82	12	52789544	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	419422	52789544	81062351	2716	21566										
KRT75	0	genome.wustl.edu	37	chr12	52822460	52822460	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatcatgcggttcatttcaGagatctcttgtttggtgttt	11	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52822460	52822460	G	C	SNP	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	missense	c.1103	p.S368C	0.439	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	166	0	0	207	46	18.18	-	-	-	C	52822460	G	C	52822460	3	2	240	1	0	0	0	0	1	0	0	0	8541	942	33	2	568	2	KRT75	12	52822460	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	32916	52822460	81029435	2717	21567										
KRT75	0	genome.wustl.edu	37	chr12	52827016	52827016	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggtctccaggaccttgttCtgctgctccaagaacctcac	8	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52827016	52827016	C	T	SNP	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	silent	c.519	p.Q173	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	29	0	0	32	8	20	-	-	-	T	52827016	C	T	52827016	2	4	240	1	0	0	0	0	0	0	0	1	8541	912	32	2		2	KRT75	12	52827016	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4556	52827016	81024879	2718	21568										
KRT6C	0	genome.wustl.edu	37	chr12	52862993	52862993	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccaagaccactgccataGgagtagctgcttcctccacc	8	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52862993	52862993	G	A	SNP	KRT6C	ENST00000252250	human	ensembl	69_37n	-1	known	silent	c.1548	p.S516	0.995	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465	122	0	0	52	77	59.69	-	-	-	A	52862993	G	A	52862993	2	1	240	1	0	0	0	0	0	0	0	1	8535	987	35	4		4	KRT6C	12	52862993	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35977	52862993	80988902	2719	21569										
KRT5	0	genome.wustl.edu	37	chr12	52910956	52910956	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggttcatctcagagatctCatgcttggtgttgcggaggt	13	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	52910956	52910956	C	T	SNP	KRT5	ENST00000252242	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385K	1.000	pfam_F,superfamily_Prefoldin,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	114	1	0.87	81	20	19.8	-	-	-	T	52910956	C	T	52910956	3	4	240	1	0	0	0	0	1	0	0	0	8532	835	29	2	635	2	KRT5	12	52910956	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	47963	52910956	80940939	2720	21570										
SPRYD3	0	genome.wustl.edu	37	chr12	53467114	53467114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagccggccccattcatcctCgtaactgtccaccatcatga	6	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	53467114	53467114	C	T	SNP	SPRYD3	ENST00000301463	human	ensembl	69_37n	-1	known	missense	c.649	p.E217K	0.998	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD3	HGNC	ENSG00000167778	42	0	0	85	22	20.56	-	-	-	T	53467114	C	T	53467114	3	4	240	1	0	0	0	0	1	0	0	0	15200	893	31	1	703	1	SPRYD3	12	53467114	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	556158	53467114	80384781	2721	21571										
SOAT2	0	genome.wustl.edu	37	chr12	53499384	53499384	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggaaacagaaagttttcatCatccgcaagtccctgcttga	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	53499384	53499384	C	T	SNP	SOAT2	ENST00000301466	human	ensembl	69_37n	1	known	silent	c.315	p.I105	0.657	NULL	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780	53	0	0	65	10	13.33	-	-	-	T	53499384	C	T	53499384	2	4	240	1	0	0	0	0	0	0	0	1	15000	816	29	2		2	SOAT2	12	53499384	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32270	53499384	80352511	2722	21572										
ESPL1	0	genome.wustl.edu	37	chr12	53681819	53681819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaggcctggctggcagagGagcctaagagacggggcact	17	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	53681819	53681819	G	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.4240	p.E1414K	0.134	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	9	0	0	21	5	19.23	-	-	-	A	53681819	G	A	53681819	3	1	240	1	0	0	0	0	1	0	0	0	5290	1175	41	2	4310	2	ESPL1	12	53681819	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	182435	53681819	80170076	2723	21573										
ESPL1	0	genome.wustl.edu	37	chr12	53682053	53682053	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggaccatccctgaggaaGaactgactgacaactggaga	12	9	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	53682053	53682053	G	C	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.4474	p.E1492Q	0.676	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	8	0	0	23	12	34.29	-	-	-	C	53682053	G	C	53682053	3	2	240	1	0	0	0	0	1	0	0	0	5290	943	33	2	4544	2	ESPL1	12	53682053	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	234	53682053	80169842	2724	21574										
PCBP2	0	genome.wustl.edu	37	chr12	53854845	53854845	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggggatatgctacccaactCaactgagcgggccatcacta	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	53854845	53854845	C	G	SNP	PCBP2	ENST00000546463	human	ensembl	69_37n	1	known	nonsense	c.422	p.S141*	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP2	HGNC	ENSG00000197111	149	0	0	143	40	21.86	-	-	-	G	53854845	C	G	53854845	4	3	240	1	0	0	0	0	0	1	0	0	11574	838	29	2	444	2	PCBP2	12	53854845	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	172792	53854845	79997050	2725	21575										
HOXC10	0	genome.wustl.edu	37	chr12	54383179	54383179	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatgaaactcaagaaaatGaaccgagagaatcggatccg	10	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	54383179	54383179	G	A	SNP	HOXC10	ENST00000303460	human	ensembl	69_37n	1	known	missense	c.978	p.M326I	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXC10	HGNC	ENSG00000180818	40	0	0	29	29	50	-	-	-	A	54383179	G	A	54383179	3	1	240	1	0	0	0	0	1	0	0	0	7360	1290	45	2	984	2	HOXC10	12	54383179	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	528334	54383179	79468716	2726	21576										
HOXC9	0	genome.wustl.edu	37	chr12	54394137	54394137	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattttccgtcctgtagcttCgcgcccaagccggcagtgtt	11	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	54394137	54394137	C	T	SNP	HOXC9	ENST00000303450	human	ensembl	69_37n	1	known	silent	c.165	p.F55	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXC9	HGNC	ENSG00000180806	37	0	0	21	11	34.38	-	-	-	T	54394137	C	T	54394137	2	4	240	1	0	0	0	0	0	0	0	1	7368	883	31	1		1	HOXC9	12	54394137	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10958	54394137	79457758	2727	21577										
ITGA5	0	genome.wustl.edu	37	chr12	54794685	54794685	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagttgagtcccgtaactCtggtcacatataggagctgc	11	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	54794685	54794685	C	G	SNP	ITGA5	ENST00000293379	human	ensembl	69_37n	-1	known	missense	c.2588	p.R863T	0.003	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	94	0	0	95	27	22.13	-	-	-	G	54794685	C	G	54794685	3	3	240	1	0	0	0	0	1	0	0	0	7933	913	32	2	585	2	ITGA5	12	54794685	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	400548	54794685	79057210	2728	21578										
OR6C74	0	genome.wustl.edu	37	chr12	55641280	55641280	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctcatttttagaagtctCattcacaactgtctacattc	3	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	55641280	55641280	C	T	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	missense	c.209	p.S70L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	117	0	0	138	34	19.77	-	-	-	T	55641280	C	T	55641280	3	4	240	1	0	0	0	0	1	0	0	0	11271	838	29	2	211	2	OR6C74	12	55641280	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	846595	55641280	78210615	2729	21579										
OR6C74	0	genome.wustl.edu	37	chr12	55641588	55641588	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtgcagccaacactgtaGatcatttcttctgtgatgtt	8	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	55641588	55641588	G	C	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	missense	c.517	p.D173H	0.826	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	62	0	0	64	18	21.95	-	-	-	C	55641588	G	C	55641588	3	2	240	1	0	0	0	0	1	0	0	0	11271	942	33	2	519	2	OR6C74	12	55641588	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	308	55641588	78210307	2730	21580										
OR6C74	0	genome.wustl.edu	37	chr12	55641628	55641628	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctcctatactgcagctctCttgcacagacactgacataa	5	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	55641628	55641628	C	G	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	missense	c.557	p.S186C	0.585	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	61	0	0	71	15	17.24	-	-	-	G	55641628	C	G	55641628	3	3	240	1	0	0	0	0	1	0	0	0	11271	913	32	2	559	2	OR6C74	12	55641628	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40	55641628	78210267	2731	21581										
OR10P1	0	genome.wustl.edu	37	chr12	56031374	56031374	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagcaatggcctccacccaGagccgccgcaaggtcttctc	9	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56031374	56031374	G	C	SNP	OR10P1	ENST00000309675	human	ensembl	69_37n	1	known	missense	c.699	p.Q233H	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10P1	HGNC	ENSG00000175398	54	0	0	43	8	15.69	-	-	-	C	56031374	G	C	56031374	3	2	240	1	0	0	0	0	1	0	0	0	10988	933	33	2	701	2	OR10P1	12	56031374	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	389746	56031374	77820521	2732	21582										
DNAJC14	0	genome.wustl.edu	37	chr12	56222181	56222181	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcactctgatcagggtcctCtgcatctctaggtggtcctg	10	13	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56222181	56222181	C	T	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	missense	c.262	p.E88K	0.454	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	106	0	0	87	56	39.16	-	-	-	T	56222181	C	T	56222181	3	4	240	1	0	0	0	0	1	0	0	0	4668	922	32	2	1870	2	DNAJC14	12	56222181	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	190807	56222181	77629714	2733	21583										
MMP19	0	genome.wustl.edu	37	chr12	56236193	56236193	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttagatccttctagaggcttCtgtaggtacccatattgtga	9	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56236193	56236193	C	T	SNP	MMP19	ENST00000322569	human	ensembl	69_37n	-1	known	silent	c.117	p.Q39	1.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP19	HGNC	ENSG00000123342	119	0	0	115	42	26.75	-	-	-	T	56236193	C	T	56236193	2	4	240	1	0	0	0	0	0	0	0	1	9728	912	32	2		2	MMP19	12	56236193	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14012	56236193	77615702	2734	21584										
ERBB3	0	genome.wustl.edu	37	chr12	56493763	56493763	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaacctggcaaccaccacaCtgggctccgccctcagccta	7	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56493763	56493763	C	A	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.3079	p.L1027M	0.995	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	69	0	0	63	14	18.18	-	-	-	A	56493763	C	A	56493763	3	1	240	1	0	0	0	0	1	0	0	0	5245	564	20	4	3308	4	ERBB3	12	56493763	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	257570	56493763	77358132	2735	21585										
ESYT1	0	genome.wustl.edu	37	chr12	56524862	56524862	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcaaggttcacccaggtcaGagaaaagagcagatcctgct	11	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56524862	56524862	G	A	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	silent	c.606	p.Q202	0.998	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	145	0	0	166	40	19.42	-	-	-	A	56524862	G	A	56524862	2	1	240	1	0	0	0	0	0	0	0	1	5301	933	33	2		2	ESYT1	12	56524862	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31099	56524862	77327033	2736	21586										
RNF41	0	genome.wustl.edu	37	chr12	56601468	56601468	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaattgtctcctccaggttCtgaaggttggggttgacact	11	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56601468	56601468	C	T	SNP	RNF41	ENST00000345093	human	ensembl	69_37n	-1	known	silent	c.564	p.Q188	1.000	pfam_USP8_interacting	pfam_USP8_interacting,pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,superfamily_TRAF-like,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	RNF41	HGNC	ENSG00000181852	147	0	0	185	28	13.15	-	-	-	T	56601468	C	T	56601468	2	4	240	1	0	0	0	0	0	0	0	1	13580	912	32	2		2	RNF41	12	56601468	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76606	56601468	77250427	2737	21587										
ANKRD52	0	genome.wustl.edu	37	chr12	56647896	56647896	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaaccagtagctccaagcaGagagcgccattggtggagac	12	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56647896	56647896	G	A	SNP	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	silent	c.861	p.L287	0.994	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645	45	0	0	56	11	16.18	-	-	-	A	56647896	G	A	56647896	2	1	240	1	0	0	0	0	0	0	0	1	677	929	33	2		2	ANKRD52	12	56647896	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46428	56647896	77203999	2738	21588										
CS	0	genome.wustl.edu	37	chr12	56679748	56679748	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcttgccatgttgctgcctGaaagtcttaattctggcctg	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56679748	56679748	G	A	SNP	CS	ENST00000351328	human	ensembl	69_37n	-1	known	silent	c.153	p.F51	1.000	superfamily_Citrate_synthase-like_core,tigrfam_Citrate_synthase_euk	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,prints_Citrate_synthase-like,tigrfam_Citrate_synthase_euk	-	no_errors	CS	HGNC	ENSG00000062485	173	0	0	159	28	14.97	-	-	-	A	56679748	G	A	56679748	2	1	240	1	0	0	0	0	0	0	0	1	3954	1281	45	2		2	CS	12	56679748	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31852	56679748	77172147	2739	21589										
CNPY2	0	genome.wustl.edu	37	chr12	56708926	56708926	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctttacctccacagtggaGatcctggctcctccgagccc	9	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56708926	56708926	G	C	SNP	CNPY2	ENST00000273308	human	ensembl	69_37n	-1	known	missense	c.76	p.L26V	1.000	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	-	no_errors	CNPY2	HGNC	ENSG00000257727	56	0	0	71	15	17.44	-	-	-	C	56708926	G	C	56708926	3	2	240	1	0	0	0	0	1	0	0	0	3658	942	33	2	492	2	CNPY2	12	56708926	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29178	56708926	77142969	2740	21590										
IL23A	0	genome.wustl.edu	37	chr12	56732974	56732974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actggcctggagtgcacatcCactagtgggacacatggtga	13	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56732974	56732974	C	T	SNP	IL23A	ENST00000228534	human	ensembl	69_37n	1	known	missense	c.146	p.P49L	0.005	superfamily_4_helix_cytokine-like_core	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core	-	no_errors	IL23A	HGNC	ENSG00000110944	16	0	0	14	9	39.13	-	-	-	T	56732974	C	T	56732974	3	4	240	1	0	0	0	0	1	0	0	0	7729	594	21	4	148	4	IL23A	12	56732974	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24048	56732974	77118921	2741	21591										
STAT2	0	genome.wustl.edu	37	chr12	56749294	56749294	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggctctccacaggtgttTcgagaactggctctccttgt	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56749294	56749294	T	C	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.404	p.E135G	0.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	103	0	0	45	74	62.18	-	-	-	C	56749294	T	C	56749294	3	2	240	1	0	0	0	0	1	0	0	0	15356	1783	62	5	2231	5	STAT2	12	56749294	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	16320	56749294	77102601	2742	21592										
BAZ2A	0	genome.wustl.edu	37	chr12	56993873	56993873	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgaatgcgaggggtgatctCatatgatctggagggagaaa	15	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	56993873	56993873	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.4906	p.E1636K	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	45	0	0	37	12	24.49	-	-	-	T	56993873	C	T	56993873	3	4	240	1	0	0	0	0	1	0	0	0	1335	835	29	2	831	2	BAZ2A	12	56993873	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	244579	56993873	76858022	2743	21593										
NACA	0	genome.wustl.edu	37	chr12	57113180	57113180	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaggtattctggggggatgGagccacagggcaattttctg	15	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57113180	57113180	G	C	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.2134	p.P712A	0.306	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	33	0	0	34	26	43.33	-	-	-	C	57113180	G	C	57113180	3	2	240	1	0	0	0	0	1	0	0	0	10205	1174	41	2	4130	2	NACA	12	57113180	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	119307	57113180	76738715	2744	21594										
HSD17B6	0	genome.wustl.edu	37	chr12	57178647	57178647	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttatttcaggcgtgagattCaacattttggggtgaaaatc	10	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57178647	57178647	C	T	SNP	HSD17B6	ENST00000322165	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	0.000	prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B6	HGNC	ENSG00000025423	76	0	0	60	37	37.76	-	-	-	T	57178647	C	T	57178647	4	4	240	1	0	0	0	0	0	1	0	0	7438	827	29	2	593	2	HSD17B6	12	57178647	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	65467	57178647	76673248	2745	21595										
R3HDM2	0	genome.wustl.edu	37	chr12	57689238	57689238	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgagaatgaacctctgttGaaattctgtattcttctcat	6	8	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57689238	57689238	G	C	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.754	p.Q252E	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	141	0	0	161	43	21.08	-	-	-	C	57689238	G	C	57689238	3	2	240	1	0	0	0	0	1	0	0	0	12971	1299	45	2	2236	2	R3HDM2	12	57689238	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	510591	57689238	76162657	2746	21596										
GLI1	0	genome.wustl.edu	37	chr12	57857801	57857801	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggactgtctggcccgcccttCtgccaccaagctaacctcat	8	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57857801	57857801	C	A	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	missense	c.120	p.F40L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	77	0	0	72	13	15.29	-	-	-	A	57857801	C	A	57857801	3	1	240	1	0	0	0	0	1	0	0	0	6489	912	32	2	126	2	GLI1	12	57857801	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	168563	57857801	75994094	2747	21597										
ARHGAP9	0	genome.wustl.edu	37	chr12	57869715	57869715	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggccagggatcgtgcggatCtgagggccaggcaaggaaac	17	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57869715	57869715	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	69_37n	-1	known	splice_site	c.1213-1	e9-1	1.000	-	-	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	31	0	0	32	6	15.79	-	-	-	T	57869715	C	T	57869715	5	4	240	1	0	0	0	0	0	0	1	0	891	927	32	2	1019	2	ARHGAP9	12	57869715	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11914	57869715	75982180	2748	21598										
ARHGAP9	0	genome.wustl.edu	37	chr12	57870181	57870181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgctgtcggcggtggctctCggtagaacaccaggctgtta	15	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57870181	57870181	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	69_37n	-1	known	missense	c.1082	p.R361Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	25	0	0	27	5	15.62	-	-	-	T	57870181	C	T	57870181	3	4	240	1	0	0	0	0	1	0	0	0	891	884	31	1	1157	1	ARHGAP9	12	57870181	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	466	57870181	75981714	2749	21599										
MARS	0	genome.wustl.edu	37	chr12	57881979	57881979	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatcagcactgtaggcccgGaaggtactcgtgctggtgct	13	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57881979	57881979	G	C	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.106	p.E36Q	0.982	superfamily_Thioredoxin-like_fold	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	17	0	0	15	7	30.43	-	-	-	C	57881979	G	C	57881979	3	2	240	1	0	0	0	0	1	0	0	0	9387	1175	41	2	108	2	MARS	12	57881979	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11798	57881979	75969916	2750	21600										
MARS	0	genome.wustl.edu	37	chr12	57884027	57884027	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacagctggttccagacactGagtacccaggaaccatgtca	9	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57884027	57884027	G	A	SNP	MARS	ENST00000549074	human	ensembl	69_37n	1	known	missense	c.238	p.E80K	0.987	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	MARS	HGNC	ENSG00000166986	54	0	0	84	19	18.45	-	-	-	A	57884027	G	A	57884027	3	1	240	1	0	0	0	0	1	0	0	0	9387	1277	45	2	550	2	MARS	12	57884027	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2048	57884027	75967868	2751	21601										
MARS	0	genome.wustl.edu	37	chr12	57908614	57908614	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagctccagcactatcaCcagctacttgagaaggttcg	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	57908614	57908614	C	G	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.2079	p.H693Q	1.000	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	90	0	0	108	18	14.29	-	-	-	G	57908614	C	G	57908614	3	3	240	1	0	0	0	0	1	0	0	0	9387	506	18	4	2141	4	MARS	12	57908614	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24587	57908614	75943281	2752	21602										
AGAP2	0	genome.wustl.edu	37	chr12	58126638	58126638	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacactcaccctcctggaaGacccgatccacattgagccc	6	18	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	58126638	58126638	G	C	SNP	AGAP2	ENST00000328568	human	ensembl	69_37n	-1	novel	missense	c.1264	p.L422V	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AGAP2	HGNC	ENSG00000135439	56	0	0	64	17	20.99	-	-	-	C	58126638	G	C	58126638	3	2	240	1	0	0	0	0	1	0	0	0	368	929	33	2	1960	2	AGAP2	12	58126638	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	218024	58126638	75725257	2753	21603										
USP15	0	genome.wustl.edu	37	chr12	62794993	62794993	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttttgcaaaaaataaagatGatggaaaatggtactatttt	7	3	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	62794993	62794993	G	A	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.2701	p.D901N	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	69	0	0	60	30	33.33	-	-	-	A	62794993	G	A	62794993	3	1	240	1	0	0	0	0	1	0	0	0	17143	1290	45	2	2692	2	USP15	12	62794993	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4668355	62794993	71056902	2754	21604										
DPY19L2	0	genome.wustl.edu	37	chr12	64015112	64015112	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggccttctatcattgcttGaggtccttaatagagagaat	10	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	64015112	64015112	G	C	SNP	DPY19L2	ENST00000324472	human	ensembl	69_37n	-1	known	nonsense	c.959	p.S320*	0.016	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L2	HGNC	ENSG00000177990	23	0	0	22	7	24.14	-	-	-	C	64015112	G	C	64015112	4	2	240	1	0	0	0	0	0	1	0	0	4776	1294	45	2	1373	2	DPY19L2	12	64015112	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1220119	64015112	69836783	2755	21605										
SRGAP1	0	genome.wustl.edu	37	chr12	64377747	64377747	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaattcgagctcaactggtaGaacaacaaaaatgcctggag	9	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	64377747	64377747	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.88	p.E30K	1.000	pfam_FCH,smart_FCH,pfscan_FCH	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	68	0	0	46	16	25.81	-	-	-	A	64377747	G	A	64377747	3	1	240	1	0	0	0	0	1	0	0	0	15236	943	33	2	94	2	SRGAP1	12	64377747	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	362635	64377747	69474148	2756	21606										
SRGAP1	0	genome.wustl.edu	37	chr12	64377861	64377861	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaatattcccggaatctaGagaagttagcagaaaggttc	11	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	64377861	64377861	G	C	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.202	p.E68Q	1.000	pfam_FCH,smart_FCH,pfscan_FCH	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	71	0	0	49	9	15.52	-	-	-	C	64377861	G	C	64377861	3	2	240	1	0	0	0	0	1	0	0	0	15236	943	33	2	208	2	SRGAP1	12	64377861	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	114	64377861	69474034	2757	21607										
SRGAP1	0	genome.wustl.edu	37	chr12	64502761	64502761	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatccgcaaactcctcctGactttgcccaggtcggtcct	7	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	64502761	64502761	G	C	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	silent	c.1863	p.L621	0.998	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	95	0	0	76	21	21.65	-	-	-	C	64502761	G	C	64502761	2	2	240	1	0	0	0	0	0	0	0	1	15236	1277	45	2		2	SRGAP1	12	64502761	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	124900	64502761	69349134	2758	21608										
CAND1	0	genome.wustl.edu	37	chr12	67688931	67688931	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatattatggctgatatgttGagcaggtaagtgtgcctgtt	13	4	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	67688931	67688931	G	C	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.486	p.L162F	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	138	0	0	98	23	19.01	-	-	-	C	67688931	G	C	67688931	3	2	240	1	0	0	0	0	1	0	0	0	2640	1281	45	2	500	2	CAND1	12	67688931	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3186170	67688931	66162964	2759	21609										
MDM1	0	genome.wustl.edu	37	chr12	68707261	68707261	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaagtttctaaacaatcctGagaggtcattcttttcctct	6	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	68707261	68707261	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	nonsense	c.1681	p.Q561*	0.301	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	109	0	0	95	16	14.41	-	-	-	A	68707261	G	A	68707261	4	1	240	1	0	0	0	0	0	1	0	0	9483	1299	45	2	479	2	MDM1	12	68707261	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1018330	68707261	65144634	2760	21610										
MDM1	0	genome.wustl.edu	37	chr12	68709007	68709007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttttcttctggttctgtaGaaggacatttctgcaaagtc	8	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	68709007	68709007	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	missense	c.1220	p.S407F	0.010	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	74	0	0	76	18	19.15	-	-	-	A	68709007	G	A	68709007	3	1	240	1	0	0	0	0	1	0	0	0	9483	942	33	2	948	2	MDM1	12	68709007	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1746	68709007	65142888	2761	21611										
MDM1	0	genome.wustl.edu	37	chr12	68719275	68719275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagtcttccaaacaaactgCctttgatattcagaatttct	5	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	68719275	68719275	C	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	missense	c.579	p.R193S	0.996	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	74	0	0	55	9	14.06	-	-	-	A	68719275	C	A	68719275	3	1	240	1	0	0	0	0	1	0	0	0	9483	738	26	4	1609	4	MDM1	12	68719275	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10268	68719275	65132620	2762	21612										
MDM1	0	genome.wustl.edu	37	chr12	68720395	68720395	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgacaatgaaaccaatgaaGaattctatgcttttgaaaag	7	5	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	68720395	68720395	G	T	SNP	MDM1	ENST00000430606	human	ensembl	69_37n	-1	known	missense	c.540	p.F180L	0.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	74	0	0	76	12	13.64	-	-	-	T	68720395	G	T	68720395	3	4	240	1	0	0	0	0	1	0	0	0	9483	933	33	2	1823	2	MDM1	12	68720395	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1120	68720395	65131500	2763	21613										
MDM1	0	genome.wustl.edu	37	chr12	68720625	68720625	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtgagtgaactctttcttGagtaacatccttttgttctg	8	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	68720625	68720625	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	nonsense	c.310	p.Q104*	0.153	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	186	1	0.53	144	31	17.71	-	-	-	A	68720625	G	A	68720625	4	1	240	1	0	0	0	0	0	1	0	0	9483	1299	45	2	2053	2	MDM1	12	68720625	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230	68720625	65131270	2764	21614										
CCT2	0	genome.wustl.edu	37	chr12	69987312	69987312	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattaatttataattatcctGaacagctctttggtgctgct	6	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	69987312	69987312	G	A	SNP	CCT2	ENST00000299300	human	ensembl	69_37n	1	known	missense	c.901	p.E301K	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	178	0	0	154	37	19.37	-	-	-	A	69987312	G	A	69987312	3	1	240	1	0	0	0	0	1	0	0	0	2982	1291	45	2	939	2	CCT2	12	69987312	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1266687	69987312	63864583	2765	21615										
BEST3	0	genome.wustl.edu	37	chr12	70049404	70049404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagtaggtccctggctggGctgaggtcatctcggggtaa	15	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	70049404	70049404	G	A	SNP	BEST3	ENST00000330891	human	ensembl	69_37n	-1	known	silent	c.1290	p.S430	0.732	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	87	0	0	97	22	18.49	-	-	-	A	70049404	G	A	70049404	2	1	240	1	0	0	0	0	0	0	0	1	1410	1194	42	4		4	BEST3	12	70049404	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62092	70049404	63802491	2766	21616										
BEST3	0	genome.wustl.edu	37	chr12	70072550	70072550	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcagatcaacactgtctCtgattctaccttcattccgg	6	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	70072550	70072550	C	G	SNP	BEST3	ENST00000330891	human	ensembl	69_37n	-1	known	missense	c.605	p.R202T	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	115	0	0	107	41	27.7	-	-	-	G	70072550	C	G	70072550	3	3	240	1	0	0	0	0	1	0	0	0	1410	913	32	2	1425	2	BEST3	12	70072550	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23146	70072550	63779345	2767	21617										
CNOT2	0	genome.wustl.edu	37	chr12	70704703	70704703	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcatgtttggtgcttcaaGaaagaagtttgtagaggggg	15	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	70704703	70704703	G	T	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.77	p.R26I	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	102	0	0	84	15	15.15	-	-	-	T	70704703	G	T	70704703	3	4	240	1	0	0	0	0	1	0	0	0	3649	942	33	2	83	2	CNOT2	12	70704703	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	632153	70704703	63147192	2768	21618										
CNOT2	0	genome.wustl.edu	37	chr12	70747692	70747692	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccctgctcagcaagccttCtaaaaaaaaaaaaaaaaaaa	3	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	70747692	70747692	C	G	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.1620	p.F540L	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	29	0	0	9	23	48.94	-	-	-	G	70747692	C	G	70747692	3	3	240	1	0	0	0	0	1	0	0	0	3649	912	32	2	1678	2	CNOT2	12	70747692	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	42989	70747692	63104203	2769	21619										
PTPRB	0	genome.wustl.edu	37	chr12	70946603	70946603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccatcacagaatttttgctGagtgggatcgcattttccac	8	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	70946603	70946603	G	C	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.5341	p.Q1781E	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	102	0	0	125	20	13.79	-	-	-	C	70946603	G	C	70946603	3	2	240	1	0	0	0	0	1	0	0	0	12879	1299	45	2	1362	2	PTPRB	12	70946603	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	198911	70946603	62905292	2770	21620										
RAB21	0	genome.wustl.edu	37	chr12	72175817	72175817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttttcaaaataggtaataAaatagacttggaaaaggaga	8	2	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	72175817	72175817	A	G	SNP	RAB21	ENST00000261263	human	ensembl	69_37n	1	known	missense	c.398	p.K133R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB21	HGNC	ENSG00000080371	63	0	0	24	44	64.71	-	-	-	G	72175817	A	G	72175817	3	3	240	1	0	0	0	0	1	0	0	0	12991	14	1	5	416	5	RAB21	12	72175817	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	1229214	72175817	61676078	2771	21621										
TRHDE	0	genome.wustl.edu	37	chr12	72680657	72680657	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcacttttcacagacccctCtcatgtccacatattattta	2	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	72680657	72680657	C	G	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.976	p.L326V	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	129	0	0	123	24	16.33	-	-	-	G	72680657	C	G	72680657	3	3	240	1	0	0	0	0	1	0	0	0	16575	913	32	2	982	2	TRHDE	12	72680657	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	504840	72680657	61171238	2772	21622										
CAPS2	0	genome.wustl.edu	37	chr12	75685560	75685560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccagcctatcattggtttCttgaatgattatatcatcct	6	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	75685560	75685560	C	T	SNP	CAPS2	ENST00000409445	human	ensembl	69_37n	-1	known	missense	c.1261	p.E421K	0.619	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS2	HGNC	ENSG00000180881	173	0	0	120	28	18.92	-	-	-	T	75685560	C	T	75685560	3	4	240	1	0	0	0	0	1	0	0	0	2663	922	32	2	432	2	CAPS2	12	75685560	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3004903	75685560	58166335	2773	21623										
BBS10	0	genome.wustl.edu	37	chr12	76740142	76740142	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagcagtggaattgttcttGagtaatggttcataataatc	9	4	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	76740142	76740142	G	C	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	silent	c.1623	p.L541	0.000	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	111	0	0	104	32	23.36	-	-	-	C	76740142	G	C	76740142	2	2	240	1	0	0	0	0	0	0	0	1	1340	1277	45	2		2	BBS10	12	76740142	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1054582	76740142	57111753	2774	21624										
OSBPL8	0	genome.wustl.edu	37	chr12	76772307	76772307	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttaaccgtgcttctccctCtaatattgcagataatgagt	7	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	76772307	76772307	C	G	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.1654	p.E552Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	135	0	0	88	59	40.14	-	-	-	G	76772307	C	G	76772307	3	3	240	1	0	0	0	0	1	0	0	0	11356	922	32	2	1051	2	OSBPL8	12	76772307	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32165	76772307	57079588	2775	21625										
CSRP2	0	genome.wustl.edu	37	chr12	77254189	77254189	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgtaggcctgtgaggctGaacacttgtgaaaagaggaa	14	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	77254189	77254189	G	A	SNP	CSRP2	ENST00000311083	human	ensembl	69_37n	-1	known	nonsense	c.286	p.Q96*	0.959	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CSRP2	HGNC	ENSG00000175183	116	0	0	90	23	20.35	-	-	-	A	77254189	G	A	77254189	4	1	240	1	0	0	0	0	0	1	0	0	3999	1299	45	2	307	2	CSRP2	12	77254189	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	481882	77254189	56597706	2776	21626										
NAV3	0	genome.wustl.edu	37	chr12	78400972	78400972	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacagcaagcaaagagtctGagaaattcaggactaccaag	10	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	78400972	78400972	G	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	nonsense	c.1654	p.E552*	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	52	0	0	65	13	16.67	-	-	-	T	78400972	G	T	78400972	4	4	240	1	0	0	0	0	0	1	0	0	10257	1291	45	2	1684	2	NAV3	12	78400972	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1146783	78400972	55450923	2777	21627										
PPP1R12A	0	genome.wustl.edu	37	chr12	80214596	80214596	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatcttcctcatcttcttCactagagcagctagactcat	5	13	7	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	80214596	80214596	C	T	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	missense	c.1072	p.E358K	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	303	0	0	270	32	10.6	-	-	-	T	80214596	C	T	80214596	3	4	240	1	0	0	0	0	1	0	0	0	12431	835	29	2	2092	2	PPP1R12A	12	80214596	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1813624	80214596	53637299	2778	21628										
ACSS3	0	genome.wustl.edu	37	chr12	81627231	81627231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgcaggtcacagaatttCtgcaggcgccattgaagagg	13	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	81627231	81627231	C	G	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.1700	p.S567C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	149	0	0	146	30	17.05	-	-	-	G	81627231	C	G	81627231	3	3	240	1	0	0	0	0	1	0	0	0	190	913	32	2	1750	2	ACSS3	12	81627231	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1412635	81627231	52224664	2779	21629										
ACSS3	0	genome.wustl.edu	37	chr12	81647431	81647431	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagctttatctgccattgtCaatggcaagccatacaaggt	8	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	81647431	81647431	C	T	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	silent	c.1977	p.V659	0.999	NULL	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	34	0	0	50	18	26.47	-	-	-	T	81647431	C	T	81647431	2	4	240	1	0	0	0	0	0	0	0	1	190	813	29	2		2	ACSS3	12	81647431	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20200	81647431	52204464	2780	21630										
PPFIA2	0	genome.wustl.edu	37	chr12	81777896	81777896	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgttccacctctcccactCgggaagaaagggctgctaaa	9	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	81777896	81777896	C	G	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.890	p.R297P	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	170	0	0	177	48	21.33	-	-	-	G	81777896	C	G	81777896	3	3	240	1	0	0	0	0	1	0	0	0	12383	884	31	3	2979	3	PPFIA2	12	81777896	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	130465	81777896	52073999	2781	21631										
PPFIA2	0	genome.wustl.edu	37	chr12	81839383	81839383	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaaagatttcagtgccttGagaacttcaacttcactgga	7	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	81839383	81839383	G	C	SNP	PPFIA2	ENST00000550359	human	ensembl	69_37n	-1	known	missense	c.298	p.Q100E	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPFIA2	HGNC	ENSG00000139220	113	0	0	108	30	21.74	-	-	-	C	81839383	G	C	81839383	3	2	240	1	0	0	0	0	1	0	0	0	12383	1277	45	2	3359	2	PPFIA2	12	81839383	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	61487	81839383	52012512	2782	21632										
CEP290	0	genome.wustl.edu	37	chr12	88478577	88478577	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgattactttgtctcttGacagtatattttgttctgct	6	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	88478577	88478577	G	C	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	nonsense	c.4496	p.S1499*	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	142	0	0	116	34	22.67	-	-	-	C	88478577	G	C	88478577	4	2	240	1	0	0	0	0	0	1	0	0	3282	1294	45	2	3029	2	CEP290	12	88478577	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6639194	88478577	45373318	2783	21633										
TMTC3	0	genome.wustl.edu	37	chr12	88582679	88582679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatttaaatagaaccaaaGaagctgaagaatcttacatg	6	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	88582679	88582679	G	C	SNP	TMTC3	ENST00000266712	human	ensembl	69_37n	1	known	missense	c.1492	p.E498Q	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	66	0	0	66	9	12	-	-	-	C	88582679	G	C	88582679	3	2	240	1	0	0	0	0	1	0	0	0	16357	943	33	2	1530	2	TMTC3	12	88582679	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	104102	88582679	45269216	2784	21634										
KITLG	0	genome.wustl.edu	37	chr12	88899002	88899002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgaaactctctctctttctCttgcaacatactgaaaaaca	3	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	88899002	88899002	C	G	SNP	KITLG	ENST00000228280	human	ensembl	69_37n	-1	known	missense	c.793	p.E265Q	1.000	pfam_SCF,pirsf_SCF	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130	113	0	0	58	35	37.63	-	-	-	G	88899002	C	G	88899002	3	3	240	1	0	0	0	0	1	0	0	0	8383	922	32	2	32	2	KITLG	12	88899002	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	316323	88899002	44952893	2785	21635										
POC1B	0	genome.wustl.edu	37	chr12	89818982	89818982	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataatatgctctaaagcatCagtcacagcgagaggtatgc	9	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	89818982	89818982	C	T	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	missense	c.1288	p.D430N	0.015	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1B	HGNC	ENSG00000139323	117	0	0	102	35	25.55	-	-	-	T	89818982	C	T	89818982	3	4	240	1	0	0	0	0	1	0	0	0	12250	826	29	2	156	2	POC1B	12	89818982	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	919980	89818982	44032913	2786	21636										
POC1B	0	genome.wustl.edu	37	chr12	89864264	89864264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatatgcaattaactccaccGctgtgaactgatttgtagaa	8	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	89864264	89864264	G	A	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	silent	c.684	p.S228	0.955	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1B	HGNC	ENSG00000139323	77	0	0	62	25	28.74	-	-	-	A	89864264	G	A	89864264	2	1	240	1	0	0	0	0	0	0	0	1	12250	1078	38	1		1	POC1B	12	89864264	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45282	89864264	43987631	2787	21637										
EPYC	0	genome.wustl.edu	37	chr12	91365729	91365729	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagttttcggaatgcatcttCatcaatctcagatattaaat	5	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	91365729	91365729	C	T	SNP	EPYC	ENST00000261172	human	ensembl	69_37n	-1	known	missense	c.550	p.E184K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	102	0	0	94	12	11.32	-	-	-	T	91365729	C	T	91365729	3	4	240	1	0	0	0	0	1	0	0	0	5238	835	29	2	430	2	EPYC	12	91365729	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1501465	91365729	42486166	2788	21638										
KERA	0	genome.wustl.edu	37	chr12	91449308	91449308	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgatgggagaccctcatCtgacagtttgttgtgattta	10	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	91449308	91449308	C	G	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	missense	c.751	p.D251H	0.998	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	85	0	0	42	64	59.81	-	-	-	G	91449308	C	G	91449308	3	3	240	1	0	0	0	0	1	0	0	0	8196	913	32	2	315	2	KERA	12	91449308	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83579	91449308	42402587	2789	21639										
DCN	0	genome.wustl.edu	37	chr12	91540003	91540003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacttgatccaactacagaGatattgttgttatgaaggta	8	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	91540003	91540003	G	C	SNP	DCN	ENST00000052754	human	ensembl	69_37n	-1	known	missense	c.912	p.I304M	0.998	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465	76	0	0	76	21	21.65	-	-	-	C	91540003	G	C	91540003	3	2	240	1	0	0	0	0	1	0	0	0	4328	932	33	2	171	2	DCN	12	91540003	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	90695	91540003	42311892	2790	21640										
EEA1	0	genome.wustl.edu	37	chr12	93171721	93171721	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actagatatcaatcacctttCcagtagtgctctcctttcat	4	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	93171721	93171721	C	G	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.3889	p.E1297Q	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	114	0	0	129	20	13.42	-	-	-	G	93171721	C	G	93171721	3	3	240	1	0	0	0	0	1	0	0	0	4956	864	30	2	362	2	EEA1	12	93171721	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1631718	93171721	40680174	2791	21641										
EEA1	0	genome.wustl.edu	37	chr12	93220059	93220059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatttgtaactttttccttCaacttaaaaaaatgtagatt	4	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	93220059	93220059	C	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.1407	p.L469	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	212	0	0	216	52	19.4	-	-	-	T	93220059	C	T	93220059	2	4	240	1	0	0	0	0	0	0	0	1	4956	825	29	2		2	EEA1	12	93220059	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	48338	93220059	40631836	2792	21642										
NUDT4	0	genome.wustl.edu	37	chr12	93788440	93788440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggattgtcccaggaggagGaatggaacccgaggaggaac	17	7	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	93788440	93788440	G	A	SNP	NUDT4	ENST00000337179	human	ensembl	69_37n	1	known	missense	c.155	p.G52E	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT4	HGNC	ENSG00000173598	96	0	0	75	18	19.35	-	-	-	A	93788440	G	A	93788440	3	1	240	1	0	0	0	0	1	0	0	0	10814	1174	41	2	161	2	NUDT4	12	93788440	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	568381	93788440	40063455	2793	21643										
CCDC41	0	genome.wustl.edu	37	chr12	94772680	94772680	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctttaattccgctacttCagcctctaaaccttttaatt	3	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	94772680	94772680	C	G	SNP	CCDC41	ENST00000339839	human	ensembl	69_37n	-1	known	missense	c.688	p.E230Q	1.000	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588	110	0	0	101	20	16.39	-	-	-	G	94772680	C	G	94772680	3	3	240	1	0	0	0	0	1	0	0	0	2839	835	29	2	1461	2	CCDC41	12	94772680	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	984240	94772680	39079215	2794	21644										
TMCC3	0	genome.wustl.edu	37	chr12	94965322	94965322	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagaatgtggcagcgactCttcatcatgggtgagacgaa	12	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	94965322	94965322	C	G	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.1323	p.K441N	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	91	0	0	115	30	20.69	-	-	-	G	94965322	C	G	94965322	3	3	240	1	0	0	0	0	1	0	0	0	16089	912	32	2	114	2	TMCC3	12	94965322	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	192642	94965322	38886573	2795	21645										
FGD6	0	genome.wustl.edu	37	chr12	95531432	95531432	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccttctttacaaagatatCagcaattctttgttgttcag	5	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	95531432	95531432	C	T	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.2860	p.D954N	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	89	0	0	87	13	13	-	-	-	T	95531432	C	T	95531432	3	4	240	1	0	0	0	0	1	0	0	0	5883	826	29	2	1492	2	FGD6	12	95531432	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	566110	95531432	38320463	2796	21646										
FGD6	0	genome.wustl.edu	37	chr12	95604117	95604117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgtgtctttctgggcttggGagttggaaattttggggtat	15	4	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	95604117	95604117	G	C	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.943	p.P315A	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	57	0	0	47	20	29.85	-	-	-	C	95604117	G	C	95604117	3	2	240	1	0	0	0	0	1	0	0	0	5883	1174	41	2	3429	2	FGD6	12	95604117	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	72685	95604117	38247778	2797	21647										
VEZT	0	genome.wustl.edu	37	chr12	95645764	95645764	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctgggacacacagactttGaaatatgttcttctttgtca	7	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	95645764	95645764	G	A	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	missense	c.85	p.E29K	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	154	1	0.65	117	25	17.61	-	-	-	A	95645764	G	A	95645764	3	1	240	1	0	0	0	0	1	0	0	0	17253	1291	45	2	91	2	VEZT	12	95645764	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41647	95645764	38206131	2798	21648										
VEZT	0	genome.wustl.edu	37	chr12	95689902	95689902	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttttattacttgtctcaaGaagacaaagagagacagaag	8	5	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	95689902	95689902	G	A	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	missense	c.1699	p.E567K	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	82	0	0	67	11	14.1	-	-	-	A	95689902	G	A	95689902	3	1	240	1	0	0	0	0	1	0	0	0	17253	943	33	2	1741	2	VEZT	12	95689902	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44138	95689902	38161993	2799	21649										
VEZT	0	genome.wustl.edu	37	chr12	95694019	95694019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaatgaattcagatatggGaaaagtcagtaaaaatgata	8	3	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	95694019	95694019	G	T	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	missense	c.1910	p.G637V	0.266	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	55	0	0	30	8	19.51	-	-	-	T	95694019	G	T	95694019	3	4	240	1	0	0	0	0	1	0	0	0	17253	1174	41	2	1956	2	VEZT	12	95694019	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4117	95694019	38157876	2800	21650										
CCDC38	0	genome.wustl.edu	37	chr12	96284624	96284624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttaccttggctgtctcttCcctgagaagcatcttctgaa	7	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	96284624	96284624	C	T	SNP	CCDC38	ENST00000344280	human	ensembl	69_37n	-1	known	missense	c.857	p.G286E	0.000	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972	102	0	0	95	23	19.49	-	-	-	T	96284624	C	T	96284624	3	4	240	1	0	0	0	0	1	0	0	0	2836	855	30	2	866	2	CCDC38	12	96284624	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	590605	96284624	37567271	2801	21651										
HAL	0	genome.wustl.edu	37	chr12	96370270	96370270	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccatgaagcgatcttttatCcagggcctacagggagagca	12	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	96370270	96370270	C	G	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.1770	p.W590C	1.000	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	49	0	0	41	11	21.15	-	-	-	G	96370270	C	G	96370270	3	3	240	1	0	0	0	0	1	0	0	0	6998	856	30	2	211	2	HAL	12	96370270	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	85646	96370270	37481625	2802	21652										
HAL	0	genome.wustl.edu	37	chr12	96384182	96384182	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtcttacgtatttagcatCagcccagccactcttcggag	9	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	96384182	96384182	C	T	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.844	p.D282N	1.000	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	48	0	0	41	23	35.94	-	-	-	T	96384182	C	T	96384182	3	4	240	1	0	0	0	0	1	0	0	0	6998	826	29	2	1177	2	HAL	12	96384182	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13912	96384182	37467713	2803	21653										
CDK17	0	genome.wustl.edu	37	chr12	96717855	96717855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaaggaatgcatactgtGagacgttggaggcctgccat	15	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	96717855	96717855	G	C	SNP	CDK17	ENST00000261211	human	ensembl	69_37n	-1	known	missense	c.154	p.H52D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK17	HGNC	ENSG00000059758	87	0	0	42	8	16	-	-	-	C	96717855	G	C	96717855	3	2	240	1	0	0	0	0	1	0	0	0	3162	1290	45	2	1515	2	CDK17	12	96717855	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	333673	96717855	37134040	2804	21654										
SLC25A3	0	genome.wustl.edu	37	chr12	98995192	98995192	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcatgattggtaccctGactgcactacagtggtttat	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	98995192	98995192	G	A	SNP	SLC25A3	ENST00000228318	human	ensembl	69_37n	1	known	silent	c.975	p.L325	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A3	HGNC	ENSG00000075415	113	0	0	64	79	55.24	-	-	-	A	98995192	G	A	98995192	2	1	240	1	0	0	0	0	0	0	0	1	14582	1277	45	2		2	SLC25A3	12	98995192	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2277337	98995192	34856703	2805	21655										
IKBIP	0	genome.wustl.edu	37	chr12	99007369	99007369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaataatgtcaaactaattCatatctgaaatgtgtgctat	5	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	99007369	99007369	C	G	SNP	IKBIP	ENST00000342502	human	ensembl	69_37n	-1	known	missense	c.1047	p.M349I	0.932	NULL	NULL	-	no_errors	IKBIP	HGNC	ENSG00000166130	40	0	0	30	5	14.29	-	-	-	G	99007369	C	G	99007369	3	3	240	1	0	0	0	0	1	0	0	0	7663	826	29	2	9	2	IKBIP	12	99007369	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12177	99007369	34844526	2806	21656										
APAF1	0	genome.wustl.edu	37	chr12	99074100	99074100	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacttctagaaatcaaggctCatgaggatgaagtgctttgt	10	6	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	99074100	99074100	C	T	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.1966	p.H656Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	134	0	0	88	41	31.78	-	-	-	T	99074100	C	T	99074100	3	4	240	1	0	0	0	0	1	0	0	0	756	826	29	2	2016	2	APAF1	12	99074100	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66731	99074100	34777795	2807	21657										
DEPDC4	0	genome.wustl.edu	37	chr12	100657285	100657285	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taacactaacctcaaggtttCattgaactcattctcagcat	4	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	100657285	100657285	C	A	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	nonsense	c.544	p.E182*	0.006	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	89	0	0	92	20	17.86	-	-	-	A	100657285	C	A	100657285	4	1	240	1	0	0	0	0	0	1	0	0	4477	835	29	2	356	2	DEPDC4	12	100657285	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1583185	100657285	33194610	2808	21658										
SCYL2	0	genome.wustl.edu	37	chr12	100706413	100706413	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagatatttacaagagtttCagtaggcagttggatcaggt	11	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	100706413	100706413	C	A	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.834	p.F278L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	96	0	0	95	16	14.29	-	-	-	A	100706413	C	A	100706413	3	1	240	1	0	0	0	0	1	0	0	0	14036	825	29	2	852	2	SCYL2	12	100706413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	49128	100706413	33145482	2809	21659										
ANO4	0	genome.wustl.edu	37	chr12	101493408	101493408	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacgacaagaacatggacctGaaaggaaaataagtttccca	8	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	101493408	101493408	G	C	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.2059	p.E687Q	0.979	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	108	0	0	67	36	34.95	-	-	-	C	101493408	G	C	101493408	3	2	240	1	0	0	0	0	1	0	0	0	698	1291	45	2	2032	2	ANO4	12	101493408	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	786995	101493408	32358487	2810	21660										
CHPT1	0	genome.wustl.edu	37	chr12	102113929	102113929	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctagaaataaaattgaagaTccttccagttcttggatttc	6	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	102113929	102113929	T	G	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	1	known	missense	c.677	p.I226S	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	165	0	0	141	31	18.02	-	-	-	G	102113929	T	G	102113929	3	3	240	1	0	0	0	0	1	0	0	0	3399	1435	50	5	695	5	CHPT1	12	102113929	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	620521	102113929	31737966	2811	21661										
PMCH	0	genome.wustl.edu	37	chr12	102591446	102591446	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtattaaataccatgtcatCatctaaatttcttatggact	4	7	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	102591446	102591446	C	T	SNP	PMCH	ENST00000329406	human	ensembl	69_37n	-1	known	missense	c.103	p.D35N	1.000	NULL	pfam_Prepro-melanin_conc_hormone,prints_Prepro-melanin_conc_hormone	-	no_errors	PMCH	HGNC	ENSG00000183395	122	0	0	121	39	24.38	-	-	-	T	102591446	C	T	102591446	3	4	240	1	0	0	0	0	1	0	0	0	12205	826	29	2	406	2	PMCH	12	102591446	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	477517	102591446	31260449	2812	21662										
STAB2	0	genome.wustl.edu	37	chr12	104031957	104031957	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttggaaactgccctacaaaGtctacagtgtgcaaatatga	8	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104031957	104031957	G	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.873	p.K291N	0.475	smart_Prot_inh_squash	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	55	0	0	64	26	28.89	-	-	-	C	104031957	G	C	104031957	3	2	240	1	0	0	0	0	1	0	0	0	15329	1020	36	4	903	4	STAB2	12	104031957	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1440511	104031957	29819938	2813	21663										
STAB2	0	genome.wustl.edu	37	chr12	104083696	104083696	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccttcccaacaagctactGaggacatggaccaggatgag	11	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104083696	104083696	G	A	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.3118	p.E1040K	0.032	pfam_FAS1_domain,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	112	0	0	118	24	16.9	-	-	-	A	104083696	G	A	104083696	3	1	240	1	0	0	0	0	1	0	0	0	15329	1291	45	2	3232	2	STAB2	12	104083696	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51739	104083696	29768199	2814	21664										
STAB2	0	genome.wustl.edu	37	chr12	104097018	104097018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagttctggaaattcagaaGaacagatgtgataataatga	9	3	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104097018	104097018	G	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.3807	p.K1269N	1.000	superfamily_FAS1_domain,superfamily_Growth_fac_rcpt	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	51	0	0	54	13	19.4	-	-	-	C	104097018	G	C	104097018	3	2	240	1	0	0	0	0	1	0	0	0	15329	933	33	2	3945	2	STAB2	12	104097018	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13322	104097018	29754877	2815	21665										
NT5DC3	0	genome.wustl.edu	37	chr12	104190689	104190689	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccttgacatctttgtacaGatgcacaggctcatagtcga	8	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104190689	104190689	G	C	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	missense	c.736	p.L246V	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696	86	0	0	98	27	21.6	-	-	-	C	104190689	G	C	104190689	3	2	240	1	0	0	0	0	1	0	0	0	10765	933	33	2	946	2	NT5DC3	12	104190689	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	93671	104190689	29661206	2816	21666										
HSP90B1	0	genome.wustl.edu	37	chr12	104326177	104326177	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgaaacttatcatcaattCattgtataaaaataaagagg	6	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104326177	104326177	C	T	SNP	HSP90B1	ENST00000299767	human	ensembl	69_37n	1	known	missense	c.275	p.S92L	1.000	pirsf_Hsp90,superfamily_ATPase-like_ATP-bd,prints_Hsp90_N	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598	61	0	0	41	9	18	-	-	-	T	104326177	C	T	104326177	3	4	240	1	0	0	0	0	1	0	0	0	7456	838	29	2	285	2	HSP90B1	12	104326177	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	135488	104326177	29525718	2817	21667										
HCFC2	0	genome.wustl.edu	37	chr12	104480763	104480763	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccataccaagctgcatcatCagattcttcagcagcaccaa	6	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	104480763	104480763	C	G	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	nonsense	c.1202	p.S401*	0.707	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	92	0	0	63	41	39.42	-	-	-	G	104480763	C	G	104480763	4	3	240	1	0	0	0	0	0	1	0	0	7044	838	29	2	1232	2	HCFC2	12	104480763	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	154586	104480763	29371132	2818	21668										
KIAA1033	0	genome.wustl.edu	37	chr12	105515925	105515925	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctgtccatcacaatccttCaaaatttggaattcaggaag	6	9	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	105515925	105515925	C	T	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.695	p.S232L	0.998	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	67	0	0	50	14	21.88	-	-	-	T	105515925	C	T	105515925	3	4	240	1	0	0	0	0	1	0	0	0	8258	838	29	2	733	2	KIAA1033	12	105515925	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1035162	105515925	28335970	2819	21669										
NUAK1	0	genome.wustl.edu	37	chr12	106464648	106464648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcattgttccataaacaaGagtgtaaagcaacacaccca	8	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	106464648	106464648	G	C	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.736	p.L246V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	61	0	0	96	17	15.04	-	-	-	C	106464648	G	C	106464648	3	2	240	1	0	0	0	0	1	0	0	0	10785	942	33	2	1257	2	NUAK1	12	106464648	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	948723	106464648	27387247	2820	21670										
CKAP4	0	genome.wustl.edu	37	chr12	106633506	106633506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctccagtctccggatctCctccgggaggcgggagacgg	14	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	106633506	106633506	C	G	SNP	CKAP4	ENST00000378026	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369Q	0.915	superfamily_Tscrpt_elong_fac_GreA/B_N	superfamily_Tscrpt_elong_fac_GreA/B_N,superfamily_STAT_TF_coiled-coil	-	no_errors	CKAP4	HGNC	ENSG00000136026	24	0	0	24	5	17.24	-	-	-	G	106633506	C	G	106633506	3	3	240	1	0	0	0	0	1	0	0	0	3474	864	30	2	707	2	CKAP4	12	106633506	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	168858	106633506	27218389	2821	21671										
CORO1C	0	genome.wustl.edu	37	chr12	109041232	109041232	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggaaatacgctcatcttGattgcagattgtgtctttta	8	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	109041232	109041232	G	C	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	missense	c.1531	p.Q511E	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	153	0	0	188	25	11.68	-	-	-	C	109041232	G	C	109041232	3	2	240	1	0	0	0	0	1	0	0	0	3785	1299	45	2	56	2	CORO1C	12	109041232	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2407726	109041232	24810663	2822	21672										
CORO1C	0	genome.wustl.edu	37	chr12	109055908	109055908	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttcagtcagggaaagggtGagtccattttctgggatctg	15	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	109055908	109055908	G	A	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	silent	c.504	p.L168	0.997	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	45	0	0	66	11	14.29	-	-	-	A	109055908	G	A	109055908	2	1	240	1	0	0	0	0	0	0	0	1	3785	1277	45	2		2	CORO1C	12	109055908	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14676	109055908	24795987	2823	21673										
MYO1H	0	genome.wustl.edu	37	chr12	109882270	109882270	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagtgtggacacgtgtttGaagcagttactaaactcgtc	11	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	109882270	109882270	G	C	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.2911	p.E971Q	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	107	0	0	135	28	17.18	-	-	-	C	109882270	G	C	109882270	3	2	240	1	0	0	0	0	1	0	0	0	10147	1291	45	2	2995	2	MYO1H	12	109882270	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	826362	109882270	23969625	2824	21674										
UBE3B	0	genome.wustl.edu	37	chr12	109937548	109937548	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgtcggaagtatgtgtctCagaagaagtccaacctgacc	10	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	109937548	109937548	C	T	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	nonsense	c.1051	p.Q351*	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	85	0	0	94	35	27.13	-	-	-	T	109937548	C	T	109937548	4	4	240	1	0	0	0	0	0	1	0	0	16977	827	29	2	1089	2	UBE3B	12	109937548	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55278	109937548	23914347	2825	21675										
TCHP	0	genome.wustl.edu	37	chr12	110340998	110340998	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaacaggcagaatggagctCtaaaacctcctaccagcgga	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	110340998	110340998	C	T	SNP	TCHP	ENST00000312777	human	ensembl	69_37n	1	known	missense	c.167	p.S56F	0.998	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437	27	0	0	37	7	15.91	-	-	-	T	110340998	C	T	110340998	3	4	240	1	0	0	0	0	1	0	0	0	15797	913	32	2	169	2	TCHP	12	110340998	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	403450	110340998	23510897	2826	21676										
IFT81	0	genome.wustl.edu	37	chr12	110570413	110570413	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatgagcagctcaagatatCtggattttctacagcagaaa	8	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	110570413	110570413	C	G	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.491	p.S164C	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	41	0	0	36	12	25	-	-	-	G	110570413	C	G	110570413	3	3	240	1	0	0	0	0	1	0	0	0	7619	913	32	2	505	2	IFT81	12	110570413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	229415	110570413	23281482	2827	21677										
IFT81	0	genome.wustl.edu	37	chr12	110643466	110643466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatctcttctgatcaacaaGaaaaaagaaaggcaattagg	7	6	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	110643466	110643466	G	C	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.1783	p.E595Q	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	156	0	0	117	15	11.36	-	-	-	C	110643466	G	C	110643466	3	2	240	1	0	0	0	0	1	0	0	0	7619	943	33	2	1957	2	IFT81	12	110643466	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73053	110643466	23208429	2828	21678										
ANAPC7	0	genome.wustl.edu	37	chr12	110813984	110813984	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgattagccagtgcgttcctCagcaaagcaattccatcttc	7	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	110813984	110813984	C	T	SNP	ANAPC7	ENST00000552087	human	ensembl	69_37n	-1	putative	missense	c.145	p.E49K	1.000	NULL	pfam_TPR_2,pfam_TPR-1,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC7	HGNC	ENSG00000196510	55	0	0	76	18	19.15	-	-	-	T	110813984	C	T	110813984	3	4	240	1	0	0	0	0	1	0	0	0	606	813	29	2	314	2	ANAPC7	12	110813984	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	170518	110813984	23037911	2829	21679										
ATXN2	0	genome.wustl.edu	37	chr12	111923576	111923576	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgcaaaacaaacaggctGagtataaactggagttggct	12	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	111923576	111923576	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	nonsense	c.2878	p.Q960*	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	134	0	0	189	32	14.48	-	-	-	A	111923576	G	A	111923576	4	1	240	1	0	0	0	0	0	1	0	0	1215	1299	45	2	1099	2	ATXN2	12	111923576	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1109592	111923576	21928319	2830	21680										
ATXN2	0	genome.wustl.edu	37	chr12	111990111	111990111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcataactggagtccatatCtttaaactgtaccacaacaa	5	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	111990111	111990111	C	G	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.1024	p.D342H	1.000	superfamily_LSM_dom	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	108	0	0	101	28	21.54	-	-	-	G	111990111	C	G	111990111	3	3	240	1	0	0	0	0	1	0	0	0	1215	913	32	2	3001	2	ATXN2	12	111990111	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66535	111990111	21861784	2831	21681										
OAS2	0	genome.wustl.edu	37	chr12	113416472	113416472	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaagctgggttggtttaTccaggaatacctgaagccct	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113416472	113416472	T	C	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.59	p.I20T	0.024	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	69	0	0	65	12	15.58	-	-	-	C	113416472	T	C	113416472	3	2	240	1	0	0	0	0	1	0	0	0	10873	1435	50	5	61	5	OAS2	12	113416472	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1426361	113416472	20435423	2832	21682										
OAS2	0	genome.wustl.edu	37	chr12	113433195	113433195	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgagtttgcagtctgcttCactgaactccagcagaagtt	11	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113433195	113433195	C	T	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	silent	c.543	p.F181	0.887	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	64	0	0	28	39	58.21	-	-	-	T	113433195	C	T	113433195	2	4	240	1	0	0	0	0	0	0	0	1	10873	825	29	2		2	OAS2	12	113433195	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16723	113433195	20418700	2833	21683										
OAS2	0	genome.wustl.edu	37	chr12	113433244	113433244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accgtcctggaaaactaaagGatttgatcctcttgataaag	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113433244	113433244	G	A	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.592	p.D198N	0.998	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	38	0	0	41	6	12.77	-	-	-	A	113433244	G	A	113433244	3	1	240	1	0	0	0	0	1	0	0	0	10873	1174	41	2	673	2	OAS2	12	113433244	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49	113433244	20418651	2834	21684										
RASAL1	0	genome.wustl.edu	37	chr12	113544914	113544914	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactcaccttcatccccatCcacatccaccagccggtcca	4	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113544914	113544914	C	G	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.1648	p.D550H	0.521	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	52	0	0	48	10	16.95	-	-	-	G	113544914	C	G	113544914	3	3	240	1	0	0	0	0	1	0	0	0	13146	855	30	2	797	2	RASAL1	12	113544914	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	111670	113544914	20306981	2835	21685										
IQCD	0	genome.wustl.edu	37	chr12	113645561	113645561	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtggtgagaggctggatttCtgcagctctatggaaaggag	16	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113645561	113645561	C	G	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	missense	c.411	p.Q137H	0.184	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	67	0	0	71	20	21.98	-	-	-	G	113645561	C	G	113645561	3	3	240	1	0	0	0	0	1	0	0	0	7859	912	32	2	640	2	IQCD	12	113645561	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100647	113645561	20206334	2836	21686										
IQCD	0	genome.wustl.edu	37	chr12	113645638	113645638	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctcctgcaattgcctttCtttctctttcaggcacctga	6	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113645638	113645638	C	G	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	missense	c.334	p.E112Q	0.112	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	82	0	0	79	31	28.18	-	-	-	G	113645638	C	G	113645638	3	3	240	1	0	0	0	0	1	0	0	0	7859	922	32	2	717	2	IQCD	12	113645638	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	77	113645638	20206257	2837	21687										
SDSL	0	genome.wustl.edu	37	chr12	113867090	113867090	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggggagggggccgaggttCagctgactggaaaggtaagg	21	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	113867090	113867090	C	T	SNP	SDSL	ENST00000345635	human	ensembl	69_37n	1	known	nonsense	c.340	p.Q114*	0.985	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	SDSL	HGNC	ENSG00000139410	19	0	0	12	19	61.29	-	-	-	T	113867090	C	T	113867090	4	4	240	1	0	0	0	0	0	1	0	0	14064	827	29	2	350	2	SDSL	12	113867090	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	221452	113867090	19984805	2838	21688										
MED13L	0	genome.wustl.edu	37	chr12	116421319	116421319	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtatcaataggctgctatCaagctgcagagtggctaaat	11	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	116421319	116421319	C	A	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.4558	p.D1520Y	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	74	0	0	92	23	20	-	-	-	A	116421319	C	A	116421319	3	1	240	1	0	0	0	0	1	0	0	0	9502	826	29	2	2118	2	MED13L	12	116421319	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2554229	116421319	17430576	2839	21689										
NOS1	0	genome.wustl.edu	37	chr12	117698390	117698390	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggccatagcctgccccatCagcttggccgagaacttgac	10	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	117698390	117698390	C	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	silent	c.2247	p.L749	1.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	77	0	0	88	20	18.52	-	-	-	T	117698390	C	T	117698390	2	4	240	1	0	0	0	0	0	0	0	1	10613	813	29	2		2	NOS1	12	117698390	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1277071	117698390	16153505	2840	21690										
NOS1	0	genome.wustl.edu	37	chr12	117768172	117768172	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccacctggattcccatatCtttcatctctgccttggcag	7	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	117768172	117768172	C	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.703	p.D235Y	1.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	33	0	0	37	10	21.28	-	-	-	A	117768172	C	A	117768172	3	1	240	1	0	0	0	0	1	0	0	0	10613	913	32	2	3713	2	NOS1	12	117768172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69782	117768172	16083723	2841	21691										
NOS1	0	genome.wustl.edu	37	chr12	117768590	117768590	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttcagggcccctcagaatGaggaccacgtgggtctcaga	12	13	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	117768590	117768590	G	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	silent	c.285	p.L95	1.000	superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	20	0	0	26	6	18.75	-	-	-	A	117768590	G	A	117768590	2	1	240	1	0	0	0	0	0	0	0	1	10613	1277	45	2		2	NOS1	12	117768590	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	418	117768590	16083305	2842	21692										
KSR2	0	genome.wustl.edu	37	chr12	117962947	117962947	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggccttgcgtgggaagctCcgggccgagaggagggacag	19	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	117962947	117962947	C	G	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.1929	p.R643	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	55	0	0	81	24	22.86	-	-	-	G	117962947	C	G	117962947	2	3	240	1	0	0	0	0	0	0	0	1	8636	842	30	2		2	KSR2	12	117962947	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	194357	117962947	15888948	2843	21693										
GCN1L1	0	genome.wustl.edu	37	chr12	120600722	120600722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggtgataaaggcttcagGatcgatcttcatcctggcaa	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120600722	120600722	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.2092	p.P698S	0.992	pfam_DUF3554,superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	59	0	0	59	38	39.18	-	-	-	A	120600722	G	A	120600722	3	1	240	1	0	0	0	0	1	0	0	0	6349	1174	41	2	6079	2	GCN1L1	12	120600722	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2637775	120600722	13251173	2844	21694										
RPLP0	0	genome.wustl.edu	37	chr12	120634635	120634635	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccgactcttccttggcttCaaccttagctggggctgcag	10	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120634635	120634635	C	T	SNP	RPLP0	ENST00000228306	human	ensembl	69_37n	-1	known	missense	c.895	p.E299K	1.000	pfam_Ribosomal_60S	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S	-	no_errors	RPLP0	HGNC	ENSG00000089157	57	0	0	61	14	18.67	-	-	-	T	120634635	C	T	120634635	3	4	240	1	0	0	0	0	1	0	0	0	13690	835	29	2	62	2	RPLP0	12	120634635	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33913	120634635	13217260	2845	21695										
GATC	0	genome.wustl.edu	37	chr12	120876255	120876255	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcatgctgaatgtgtacctGaagtcgcaccacggagagca	12	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120876255	120876255	G	A	SNP	GATC	ENST00000551806	human	ensembl	69_37n	1	putative	missense	c.106	p.E36K	1.000	pfam_Cyt_c_oxidase_su6a,superfamily_Cyt_c_oxidase_su6a	pfam_Glu-tRNAGlntrans,pfam_Cyt_c_oxidase_su6a,superfamily_Cyt_c_oxidase_su6a,tigrfam_Glu-tRNAGlntrans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GATC	HGNC	ENSG00000111780	38	0	0	32	7	17.95	-	-	-	A	120876255	G	A	120876255	3	1	240	1	0	0	0	0	1	0	0	0	6312	1277	45	2		2	GATC	12	120876255	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	241620	120876255	12975640	2846	21696										
GATC	0	genome.wustl.edu	37	chr12	120897761	120897761	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagccattcccacacagctGagtagctcattctggaaagg	10	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120897761	120897761	G	C	SNP	GATC	ENST00000551765	human	ensembl	69_37n	1	known	nonstop	c.410	p.*137S	0.068	NULL	pfam_Glu-tRNAGlntrans,tigrfam_Glu-tRNAGlntrans	-	no_errors	GATC	Clone_based_vega_gene	ENSG00000257218	98	0	0	77	14	15.38	-	-	-	C	120897761	G	C	120897761	4	2	240	1	0	0	0	0	0	0	0	0	6312	1285	45	2	424	2	GATC	12	120897761	Nonstop_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21506	120897761	12954134	2847	21697										
DYNLL1	0	genome.wustl.edu	37	chr12	120935920	120935920	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctggcattgcatcgtgggGaggaacttcggtagttatgt	14	7	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120935920	120935920	G	A	SNP	DYNLL1	ENST00000242577	human	ensembl	69_37n	1	known	silent	c.177	p.G59	1.000	pfam_Dynein_light_chain_typ-1/2,superfamily_Dynein_light_chain_typ-1/2	pfam_Dynein_light_chain_typ-1/2,superfamily_Dynein_light_chain_typ-1/2	-	no_errors	DYNLL1	HGNC	ENSG00000088986	90	0	0	77	20	20.62	-	-	-	A	120935920	G	A	120935920	2	1	240	1	0	0	0	0	0	0	0	1	4883	1161	41	2		2	DYNLL1	12	120935920	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38159	120935920	12915975	2848	21698										
RNF10	0	genome.wustl.edu	37	chr12	120972697	120972697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacagctcctccgcctcttCgggcagcagcaaagggcaac	10	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120972697	120972697	C	T	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.83	p.S28L	0.987	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	15	0	0	13	4	23.53	-	-	-	T	120972697	C	T	120972697	3	4	240	1	0	0	0	0	1	0	0	0	13508	893	31	1	85	1	RNF10	12	120972697	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36777	120972697	12879198	2849	21699										
RNF10	0	genome.wustl.edu	37	chr12	120995234	120995234	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgtggagtaaatgtcccatCtgttacagttctgtgcataa	9	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	120995234	120995234	C	T	SNP	RNF10	ENST00000542207	human	ensembl	69_37n	1	putative	missense	c.188	p.S63F	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF10	HGNC	ENSG00000022840	101	0	0	151	34	18.38	-	-	-	T	120995234	C	T	120995234	3	4	240	1	0	0	0	0	1	0	0	0	13508	903	32	2	813	2	RNF10	12	120995234	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22537	120995234	12856661	2850	21700										
SPPL3	0	genome.wustl.edu	37	chr12	121204081	121204081	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcacctttaaataggccatCgtgaggagtggcaataaagt	10	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121204081	121204081	C	T	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	silent	c.1068	p.T356	0.174	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	44	0	0	66	17	20.48	-	-	-	T	121204081	C	T	121204081	2	4	240	1	0	0	0	0	0	0	0	1	15181	871	31	1		1	SPPL3	12	121204081	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	208847	121204081	12647814	2851	21701										
OASL	0	genome.wustl.edu	37	chr12	121471506	121471506	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgccaccagctccacctctCtggtgctcctgagaaccgtg	9	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121471506	121471506	C	G	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	missense	c.239	p.R80T	0.000	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	25	0	0	52	7	11.86	-	-	-	G	121471506	C	G	121471506	3	3	240	1	0	0	0	0	1	0	0	0	10875	913	32	2	1325	2	OASL	12	121471506	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267425	121471506	12380389	2852	21702										
OASL	0	genome.wustl.edu	37	chr12	121476654	121476654	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctgcctcagaaactcctCcacggtccgcacagcgtcta	7	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121476654	121476654	C	G	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	missense	c.121	p.E41Q	0.127	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	40	0	0	32	20	38.46	-	-	-	G	121476654	C	G	121476654	3	3	240	1	0	0	0	0	1	0	0	0	10875	864	30	2	1447	2	OASL	12	121476654	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5148	121476654	12375241	2853	21703										
CAMKK2	0	genome.wustl.edu	37	chr12	121686436	121686436	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaagctgggaatgtgtttGactgagttctcgacctcctc	11	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121686436	121686436	G	C	SNP	CAMKK2	ENST00000324774	human	ensembl	69_37n	-1	known	silent	c.1425	p.V475	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	60	0	0	49	25	33.78	-	-	-	C	121686436	G	C	121686436	2	2	240	1	0	0	0	0	0	0	0	1	2632	1277	45	2		2	CAMKK2	12	121686436	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	209782	121686436	12165459	2854	21704										
CAMKK2	0	genome.wustl.edu	37	chr12	121693406	121693406	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaacgggcctggtcttcaGagagtggtttgagggtgggc	18	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121693406	121693406	G	A	SNP	CAMKK2	ENST00000324774	human	ensembl	69_37n	-1	known	missense	c.854	p.S285F	0.987	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	75	0	0	59	10	14.49	-	-	-	A	121693406	G	A	121693406	3	1	240	1	0	0	0	0	1	0	0	0	2632	942	33	2	958	2	CAMKK2	12	121693406	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6970	121693406	12158489	2855	21705										
RNF34	0	genome.wustl.edu	37	chr12	121858422	121858422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtgagagcttcactgtctGacttgtcaagccttgatgat	11	8	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	121858422	121858422	G	C	SNP	RNF34	ENST00000392465	human	ensembl	69_37n	1	known	missense	c.772	p.D258H	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF34	HGNC	ENSG00000170633	59	0	0	54	12	18.18	-	-	-	C	121858422	G	C	121858422	3	2	240	1	0	0	0	0	1	0	0	0	13575	1290	45	2	800	2	RNF34	12	121858422	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	165016	121858422	11993473	2856	21706										
VPS33A	0	genome.wustl.edu	37	chr12	122748164	122748164	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatcaactctagcctgggtCtgacaaaaaaaattatattc	5	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	122748164	122748164	C	T	SNP	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	missense	c.251	p.R84K	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	116	0	0	146	19	11.52	-	-	-	T	122748164	C	T	122748164	3	4	240	1	0	0	0	0	1	0	0	0	17298	913	32	2	1583	2	VPS33A	12	122748164	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	889742	122748164	11103731	2857	21707										
CLIP1	0	genome.wustl.edu	37	chr12	122757568	122757568	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctgggtaggacaatcctCtgtgtcgtggagatcaaagc	13	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	122757568	122757568	C	G	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.4171	p.E1391Q	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	166	0	0	153	42	21.54	-	-	-	G	122757568	C	G	122757568	3	3	240	1	0	0	0	0	1	0	0	0	3562	922	32	2	149	2	CLIP1	12	122757568	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9404	122757568	11094327	2858	21708										
CLIP1	0	genome.wustl.edu	37	chr12	122763577	122763577	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctgggtggtactctacctCatttctcagtttctccagct	7	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	122763577	122763577	C	T	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.3763	p.E1255K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	101	0	0	103	23	18.25	-	-	-	T	122763577	C	T	122763577	3	4	240	1	0	0	0	0	1	0	0	0	3562	835	29	2	573	2	CLIP1	12	122763577	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6009	122763577	11088318	2859	21709										
CLIP1	0	genome.wustl.edu	37	chr12	122837295	122837295	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagatcacctttggtaattGattcttcttcaacccggaac	6	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	122837295	122837295	G	C	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	nonsense	c.1346	p.S449*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	77	0	0	80	21	20.79	-	-	-	C	122837295	G	C	122837295	4	2	240	1	0	0	0	0	0	1	0	0	3562	1294	45	2	3009	2	CLIP1	12	122837295	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73718	122837295	11014600	2860	21710										
CLIP1	0	genome.wustl.edu	37	chr12	122862453	122862453	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcctcctgagtctcagatGatggagtgcttgatgctttt	10	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	122862453	122862453	G	C	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	nonsense	c.140	p.S47*	0.092	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	50	0	0	47	12	20.34	-	-	-	C	122862453	G	C	122862453	4	2	240	1	0	0	0	0	0	1	0	0	3562	1294	45	2	4235	2	CLIP1	12	122862453	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25158	122862453	10989442	2861	21711										
RSRC2	0	genome.wustl.edu	37	chr12	123001897	123001897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctcgatttcttcctctctCtgcttctggatctcgatttc	5	13	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	123001897	123001897	C	G	SNP	RSRC2	ENST00000331738	human	ensembl	69_37n	-1	known	missense	c.479	p.R160T	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011	191	0	0	145	71	32.87	-	-	-	G	123001897	C	G	123001897	3	3	240	1	0	0	0	0	1	0	0	0	13801	913	32	2	849	2	RSRC2	12	123001897	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	139444	123001897	10849998	2862	21712										
SBNO1	0	genome.wustl.edu	37	chr12	123805113	123805113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccctttccacagcatcctGacttgttataaggctactgt	7	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	123805113	123805113	G	C	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	missense	c.2533	p.Q845E	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	154	1	0.65	65	81	55.1	-	-	-	C	123805113	G	C	123805113	3	2	240	1	0	0	0	0	1	0	0	0	13949	1299	45	2	1704	2	SBNO1	12	123805113	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	803216	123805113	10046782	2863	21713										
SETD8	0	genome.wustl.edu	37	chr12	123888131	123888131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgcccagtctgaagaaagGaaaagaatagatgaattgat	10	5	2	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	123888131	123888131	G	T	SNP	SETD8	ENST00000330479	human	ensembl	69_37n	1	known	missense	c.609	p.R203S	1.000	pirsf_Hist_H4-K20_MeTrfase	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_errors	SETD8	HGNC	ENSG00000183955	73	0	0	69	19	21.59	-	-	-	T	123888131	G	T	123888131	3	4	240	1	0	0	0	0	1	0	0	0	14225	1165	41	2	631	2	SETD8	12	123888131	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	83018	123888131	9963764	2864	21714										
TCTN2	0	genome.wustl.edu	37	chr12	124156155	124156155	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctggcagtgctgcaggacGaggcgggtaaagtccggccc	16	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	124156155	124156155	G	T	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	nonsense	c.184	p.E62*	0.002	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	52	0	0	75	14	15.73	-	-	-	T	124156155	G	T	124156155	4	4	240	1	0	0	0	0	0	1	0	0	15818	1059	37	3	190	3	TCTN2	12	124156155	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	268024	124156155	9695740	2865	21715										
TCTN2	0	genome.wustl.edu	37	chr12	124189164	124189164	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcctgctcacctgagcatCcgcatcctcatctcggatgc	7	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	124189164	124189164	C	T	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	silent	c.1698	p.I566	0.999	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	52	0	0	45	11	19.64	-	-	-	T	124189164	C	T	124189164	2	4	240	1	0	0	0	0	0	0	0	1	15818	845	30	2		2	TCTN2	12	124189164	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33009	124189164	9662731	2866	21716										
DNAH10	0	genome.wustl.edu	37	chr12	124270443	124270443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatcgcctgggaaatcgctGagagagtctgccgagtggtc	15	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	124270443	124270443	G	C	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.1198	p.E400Q	0.943	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	45	0	0	61	13	17.57	-	-	-	C	124270443	G	C	124270443	3	2	240	1	0	0	0	0	1	0	0	0	4634	1291	45	2	1232	2	DNAH10	12	124270443	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81279	124270443	9581452	2867	21717										
DNAH10	0	genome.wustl.edu	37	chr12	124398988	124398988	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttcacctgggagttccgtGacgagatggtcaatcggatt	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	124398988	124398988	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.10111	p.D3371N	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	45	0	0	50	7	12.28	-	-	-	A	124398988	G	A	124398988	3	1	240	1	0	0	0	0	1	0	0	0	4634	1290	45	2	10349	2	DNAH10	12	124398988	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128545	124398988	9452907	2868	21718										
DNAH10	0	genome.wustl.edu	37	chr12	124415059	124415059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttccagccattccacttCttccggaacaaggaagtgga	8	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	124415059	124415059	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.12369	p.F4123	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	67	0	0	78	15	16.13	-	-	-	T	124415059	C	T	124415059	2	4	240	1	0	0	0	0	0	0	0	1	4634	912	32	2		2	DNAH10	12	124415059	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16071	124415059	9436836	2869	21719										
UBC	0	genome.wustl.edu	37	chr12	125397236	125397236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctggatgttgtagtcaGacagggtacgaccatcttcc	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	125397236	125397236	G	C	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361C	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	184	0	0	247	59	19.28	-	-	-	C	125397236	G	C	125397236	3	2	240	1	0	0	0	0	1	0	0	0	16939	942	33	2	979	2	UBC	12	125397236	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	982177	125397236	8454659	2870	21720										
DHX37	0	genome.wustl.edu	37	chr12	125453191	125453191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgggaactgcctggattCcacctgtgggacgcccagga	13	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	125453191	125453191	C	T	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.1297	p.E433K	1.000	smart_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	26	0	0	35	12	25	-	-	-	T	125453191	C	T	125453191	3	4	240	1	0	0	0	0	1	0	0	0	4546	864	30	2	2248	2	DHX37	12	125453191	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55955	125453191	8398704	2871	21721										
SLC15A4	0	genome.wustl.edu	37	chr12	129299502	129299502	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcataaccagtgacaaagctGacgttctgctgaatataggc	10	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	129299502	129299502	G	A	SNP	SLC15A4	ENST00000376744	human	ensembl	69_37n	-1	known	nonsense	c.496	p.Q166*	0.998	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC15A4	HGNC	ENSG00000139370	90	0	0	101	22	17.89	-	-	-	A	129299502	G	A	129299502	4	1	240	1	0	0	0	0	0	1	0	0	14490	1277	45	2	1101	2	SLC15A4	12	129299502	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3846311	129299502	4552393	2872	21722										
PIWIL1	0	genome.wustl.edu	37	chr12	130827159	130827159	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactgggagagcccgagccaGagccagaggaagggcccgcg	18	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	130827159	130827159	G	C	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.23	p.R8T	1.000	pfam_GAGE	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	41	0	0	45	10	18.18	-	-	-	C	130827159	G	C	130827159	3	2	240	1	0	0	0	0	1	0	0	0	12031	942	33	2	25	2	PIWIL1	12	130827159	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1527657	130827159	3024736	2873	21723										
DDX51	0	genome.wustl.edu	37	chr12	132625197	132625197	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcgggagttagtgaagcaGagaaccctcgagaagcccat	12	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	132625197	132625197	G	C	SNP	DDX51	ENST00000397333	human	ensembl	69_37n	-1	known	silent	c.1524	p.L508	0.553	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163	53	0	0	51	13	20.31	-	-	-	C	132625197	G	C	132625197	2	2	240	1	0	0	0	0	0	0	0	1	4400	929	33	2		2	DDX51	12	132625197	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1798038	132625197	1226698	2874	21724										
GOLGA3	0	genome.wustl.edu	37	chr12	133393366	133393366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaggtccatccgggctttCcccttccgtggatgctctgt	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	12	133393366	133393366	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	0.359	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	44	0	0	41	17	29.31	-	-	-	T	133393366	C	T	133393366	3	4	240	1	0	0	0	0	1	0	0	0	6606	864	30	2	4556	2	GOLGA3	12	133393366	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	768169	133393366	458529	2875	21725										
ZMYM5	0	genome.wustl.edu	37	chr13	20425978	20425978	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcaataacaattgtctCacttatatttcctttctgag	3	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	20425978	20425978	C	T	SNP	ZMYM5	ENST00000337963	human	ensembl	69_37n	-1	known	missense	c.343	p.E115K	1.000	NULL	pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM5	HGNC	ENSG00000132950	70	0	0	53	16	23.19	-	-	-	T	20425978	C	T	20425978	3	4	240	1	0	0	0	0	1	0	0	0	17799	835	29	2	1801	2	ZMYM5	13	20425978	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		20425978	94743900	2876	21726										
IFT88	0	genome.wustl.edu	37	chr13	21176024	21176024	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaaggcattccaaaaattGattactgttccattagaaat	6	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	21176024	21176024	G	C	SNP	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	missense	c.1020	p.L340F	0.998	pfam_OMP_IML2_mit/TPR_39	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	79	0	0	40	25	38.46	-	-	-	C	21176024	G	C	21176024	3	2	240	1	0	0	0	0	1	0	0	0	7620	1281	45	2	1066	2	IFT88	13	21176024	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	750046	21176024	93993854	2877	21727										
ZDHHC20	0	genome.wustl.edu	37	chr13	21957099	21957099	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttgtaacagaagcttgttCtggatccatccccacaaggc	9	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	21957099	21957099	C	T	SNP	ZDHHC20	ENST00000400590	human	ensembl	69_37n	-1	known	missense	c.904	p.E302K	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776	95	0	0	67	15	18.29	-	-	-	T	21957099	C	T	21957099	3	4	240	1	0	0	0	0	1	0	0	0	17707	922	32	2	172	2	ZDHHC20	13	21957099	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	781075	21957099	93212779	2878	21728										
SGCG	0	genome.wustl.edu	37	chr13	23777859	23777859	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtgagcagtacactacagCcacagaaggcatctgcatag	11	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	23777859	23777859	C	G	SNP	SGCG	ENST00000218867	human	ensembl	69_37n	1	known	missense	c.26	p.A9G	0.984	NULL	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683	106	0	0	50	57	53.27	-	-	-	G	23777859	C	G	23777859	3	3	240	1	0	0	0	0	1	0	0	0	14291	739	26	4	28	4	SGCG	13	23777859	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1820760	23777859	91392019	2879	21729										
SACS	0	genome.wustl.edu	37	chr13	23904867	23904867	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgactgaaatcgggatgctGaggttgaaaatgttcgtctg	13	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	23904867	23904867	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.13148	p.S4383L	1.000	pfscan_DnaJ_N	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	108	0	0	72	17	19.1	-	-	-	A	23904867	G	A	23904867	3	1	240	1	0	0	0	0	1	0	0	0	13890	1294	45	2	595	2	SACS	13	23904867	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	127008	23904867	91265011	2880	21730										
SACS	0	genome.wustl.edu	37	chr13	23910337	23910337	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcaaacacaaaacagatttCtgtcgcctttgcatcatcag	5	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	23910337	23910337	C	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.7678	p.E2560Q	1.000	superfamily_ATPase-like_ATP-bd	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	94	0	0	73	23	23.96	-	-	-	G	23910337	C	G	23910337	3	3	240	1	0	0	0	0	1	0	0	0	13890	922	32	2	6065	2	SACS	13	23910337	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5470	23910337	91259541	2881	21731										
SPATA13	0	genome.wustl.edu	37	chr13	24860454	24860454	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggggatgtcatccaggttCtggaagcctccaacaaggac	12	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	24860454	24860454	C	T	SNP	SPATA13	ENST00000382141	human	ensembl	69_37n	1	known	missense	c.2150	p.S717F	0.869	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA13	HGNC	ENSG00000182957	41	0	0	37	15	28.85	-	-	-	T	24860454	C	T	24860454	3	4	240	1	0	0	0	0	1	0	0	0	15091	912	32	2	2422	2	SPATA13	13	24860454	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	950117	24860454	90309424	2882	21732										
PARP4	0	genome.wustl.edu	37	chr13	25000642	25000642	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccattttcatcagtgatttGaacactattccctctttttc	3	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	25000642	25000642	G	A	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	silent	c.4941	p.F1647	0.176	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	128	0	0	57	44	43.56	-	-	-	A	25000642	G	A	25000642	2	1	240	1	0	0	0	0	0	0	0	1	11536	1281	45	2		2	PARP4	13	25000642	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	140188	25000642	90169236	2883	21733										
RNF17	0	genome.wustl.edu	37	chr13	25440294	25440294	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatttcagaaaccaagatcaGatcatgataaaaagtatgaa	6	5	3	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	25440294	25440294	G	T	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.4114	p.D1372Y	0.951	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	82	0	0	32	26	44.83	-	-	-	T	25440294	G	T	25440294	3	4	240	1	0	0	0	0	1	0	0	0	13547	942	33	2	4232	2	RNF17	13	25440294	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	439652	25440294	89729584	2884	21734										
WASF3	0	genome.wustl.edu	37	chr13	27216435	27216435	+	Frame_Shift_Del	DEL	C	C	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtgaagaggaacattgagCcccggcacttgtgccgggga							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	27216435	27216435	C	-	DEL	WASF3	ENST00000335327	human	ensembl	69_37n	1	known	frame_shift_del	c.28	p.R11fs	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970	51	0	0	32	25	43.86	-	-	-	-	27216435	C	-	27216435	7	5	240	1	0	1	0	1	0	0	0	0	17351	739	26	0	30	0	WASF3	13	27216435	Frame_Shift_Del	DEL	C	TCGA-AC-A23H-01A-11D-A159-09	1776141	27216435	87953443	2885	21735										
WASF3	0	genome.wustl.edu	37	chr13	27241737	27241737	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtttcaaagaacagcattCctaatcctgttgctgatatt	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	27241737	27241737	C	G	SNP	WASF3	ENST00000335327	human	ensembl	69_37n	1	known	missense	c.352	p.P118A	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970	62	0	0	30	22	42.31	-	-	-	G	27241737	C	G	27241737	3	3	240	1	0	0	0	0	1	0	0	0	17351	855	30	2	362	2	WASF3	13	27241737	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25302	27241737	87928141	2886	21736										
USP12	0	genome.wustl.edu	37	chr13	27669743	27669743	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatgatatacttacagtttCacaagtaagacatctggttt	7	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	27669743	27669743	C	T	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.568	p.E190K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	116	0	0	45	44	49.44	-	-	-	T	27669743	C	T	27669743	3	4	240	1	0	0	0	0	1	0	0	0	17140	835	29	2	568	2	USP12	13	27669743	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	428006	27669743	87500135	2887	21737										
LNX2	0	genome.wustl.edu	37	chr13	28127463	28127463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctcaacaatctggacctCaagtgctttaagggcaacag	8	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	28127463	28127463	C	T	SNP	LNX2	ENST00000316334	human	ensembl	69_37n	-1	known	missense	c.1660	p.E554K	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517	62	0	0	50	19	27.54	-	-	-	T	28127463	C	T	28127463	3	4	240	1	0	0	0	0	1	0	0	0	8922	835	29	2	424	2	LNX2	13	28127463	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	457720	28127463	87042415	2888	21738										
FLT1	0	genome.wustl.edu	37	chr13	28971161	28971161	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggaagctatgcaaatgtaGattccagaaattctagagtc	9	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	28971161	28971161	G	C	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.1596	p.I532M	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	112	0	0	78	21	21.21	-	-	-	C	28971161	G	C	28971161	3	2	240	1	0	0	0	0	1	0	0	0	5987	932	33	2	2681	2	FLT1	13	28971161	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	843698	28971161	86198717	2889	21739										
POMP	0	genome.wustl.edu	37	chr13	29252209	29252209	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatgggagagccacacttGatggtggaatataaacttgg	13	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	29252209	29252209	G	C	SNP	POMP	ENST00000380842	human	ensembl	69_37n	1	known	missense	c.396	p.L132F	0.996	pfam_UMP1	pfam_UMP1	-	no_errors	POMP	HGNC	ENSG00000132963	179	0	0	128	28	17.95	-	-	-	C	29252209	G	C	29252209	3	2	240	1	0	0	0	0	1	0	0	0	12318	1281	45	2	418	2	POMP	13	29252209	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	281048	29252209	85917669	2890	21740										
MTUS2	0	genome.wustl.edu	37	chr13	29599594	29599594	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctacctcagaaagcaagcaGagcactccctcagagaccca	7	15	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	29599594	29599594	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.789	p.Q263	0.135	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	13	0	0	12	11	47.83	-	-	-	A	29599594	G	A	29599594	2	1	240	1	0	0	0	0	0	0	0	1	10038	933	33	2		2	MTUS2	13	29599594	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	347385	29599594	85570284	2891	21741										
MTUS2	0	genome.wustl.edu	37	chr13	29599939	29599939	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catctgctgaacagtgacctCcaccaccttggggtgggaag	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	29599939	29599939	C	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.1134	p.L378	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	21	0	0	24	11	31.43	-	-	-	A	29599939	C	A	29599939	2	1	240	1	0	0	0	0	0	0	0	1	10038	842	30	2		2	MTUS2	13	29599939	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	345	29599939	85569939	2892	21742										
KATNAL1	0	genome.wustl.edu	37	chr13	30857771	30857771	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgttgccatttgcctttGatagctggatctctgactga	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	30857771	30857771	G	C	SNP	KATNAL1	ENST00000380615	human	ensembl	69_37n	-1	known	missense	c.144	p.I48M	0.950	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	146	0	0	57	74	56.49	-	-	-	C	30857771	G	C	30857771	3	2	240	1	0	0	0	0	1	0	0	0	8039	1280	45	2	1368	2	KATNAL1	13	30857771	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1257832	30857771	84312107	2893	21743										
BRCA2	0	genome.wustl.edu	37	chr13	32910551	32910551	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtaatctctcaggatcttGattataaagaagcaaaatgt	7	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	32910551	32910551	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.2059	p.D687H	0.002	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	65	0	0	31	11	26.19	-	-	-	C	32910551	G	C	32910551	3	2	240	1	0	0	0	0	1	0	0	0	1507	1290	45	2	2097	2	BRCA2	13	32910551	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2052780	32910551	82259327	2894	21744										
BRCA2	0	genome.wustl.edu	37	chr13	32911589	32911589	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagcaaaatgttcttcaaaGatattgaagaacaatatcct	6	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	32911589	32911589	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.3097	p.D1033H	1.000	pfam_BRCA2_repeat,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	46	0	0	35	6	14.63	-	-	-	C	32911589	G	C	32911589	3	2	240	1	0	0	0	0	1	0	0	0	1507	942	33	2	3135	2	BRCA2	13	32911589	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1038	32911589	82258289	2895	21745										
NBEA	0	genome.wustl.edu	37	chr13	36229053	36229053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgaccagagtatacaaatCaatgcacattgttttgtggt	9	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	36229053	36229053	C	G	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.8034	p.I2678M	1.000	smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	93	0	0	63	25	28.41	-	-	-	G	36229053	C	G	36229053	3	3	240	1	0	0	0	0	1	0	0	0	10259	816	29	2	8244	2	NBEA	13	36229053	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3317464	36229053	78940825	2896	21746										
ALG5	0	genome.wustl.edu	37	chr13	37569679	37569679	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagaagaatttctcttcttCatgtcgatggagtgctggca	10	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	37569679	37569679	C	T	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.121	p.E41K	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	142	0	0	85	31	26.72	-	-	-	T	37569679	C	T	37569679	3	4	240	1	0	0	0	0	1	0	0	0	521	835	29	2	889	2	ALG5	13	37569679	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1340626	37569679	77600199	2897	21747										
FAM48A	0	genome.wustl.edu	37	chr13	37583935	37583935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atagccatttgatgctgcaaGaatcgcaactgctgcaaaag	9	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	37583935	37583935	G	A	SNP	FAM48A	ENST00000356185	human	ensembl	69_37n	-1	known	missense	c.2113	p.L705F	1.000	NULL	pfam_Spt20	-	no_errors	FAM48A	HGNC	ENSG00000102710	128	0	0	113	43	27.56	-	-	-	A	37583935	G	A	37583935	3	1	240	1	0	0	0	0	1	0	0	0	5618	942	33	2	129	2	FAM48A	13	37583935	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14256	37583935	77585943	2898	21748										
FREM2	0	genome.wustl.edu	37	chr13	39452330	39452330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatctgggtgactcctttTactgcagcattgagaaggtg	12	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	39452330	39452330	T	C	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.8731	p.Y2911H	0.609	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	121	0	0	101	12	10.62	-	-	-	C	39452330	T	C	39452330	3	2	240	1	0	0	0	0	1	0	0	0	6094	1754	61	5	8817	5	FREM2	13	39452330	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	1868395	39452330	75717548	2899	21749										
MTRF1	0	genome.wustl.edu	37	chr13	41791309	41791309	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caatggcttcttcatctgctGattgaagcagtctctgaatt	8	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	41791309	41791309	G	A	SNP	MTRF1	ENST00000379477	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427L	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662	94	0	0	46	42	47.73	-	-	-	A	41791309	G	A	41791309	3	1	240	1	0	0	0	0	1	0	0	0	10031	1294	45	2	61	2	MTRF1	13	41791309	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2338979	41791309	73378569	2900	21750										
NAA16	0	genome.wustl.edu	37	chr13	41891017	41891017	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcagtacaaaaatggcctCaagttttgcaagatgattct	8	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	41891017	41891017	C	T	SNP	NAA16	ENST00000379406	human	ensembl	69_37n	1	known	silent	c.90	p.L30	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR-1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766	151	0	0	91	28	23.53	-	-	-	T	41891017	C	T	41891017	2	4	240	1	0	0	0	0	0	0	0	1	10191	813	29	2		2	NAA16	13	41891017	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	99708	41891017	73278861	2901	21751										
NAA16	0	genome.wustl.edu	37	chr13	41933013	41933013	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctttggacacagctgataGattcatcaattccaaatgtg	8	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	41933013	41933013	G	C	SNP	NAA16	ENST00000379406	human	ensembl	69_37n	1	known	missense	c.1325	p.R442T	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR-1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766	60	0	0	34	31	47.69	-	-	-	C	41933013	G	C	41933013	3	2	240	1	0	0	0	0	1	0	0	0	10191	942	33	2	1404	2	NAA16	13	41933013	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41996	41933013	73236865	2902	21752										
AKAP11	0	genome.wustl.edu	37	chr13	42873541	42873541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagccagtgtgatgctgcttCccagacggttactggtcatc	12	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	42873541	42873541	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.659	p.S220F	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	70	0	0	39	19	32.76	-	-	-	T	42873541	C	T	42873541	3	4	240	1	0	0	0	0	1	0	0	0	447	855	30	2	681	2	AKAP11	13	42873541	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	940528	42873541	72296337	2903	21753										
AKAP11	0	genome.wustl.edu	37	chr13	42875259	42875259	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagtgcccttctcccatatCatatttcatctactgcatgt	5	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	42875259	42875259	C	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.2377	p.H793N	0.056	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	55	0	0	43	14	24.56	-	-	-	A	42875259	C	A	42875259	3	1	240	1	0	0	0	0	1	0	0	0	447	826	29	2	2399	2	AKAP11	13	42875259	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1718	42875259	72294619	2904	21754										
AKAP11	0	genome.wustl.edu	37	chr13	42875586	42875586	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagttacaaaaatggttgatGaacgtacagattatttaact	7	4	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	42875586	42875586	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.2704	p.E902K	0.004	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	20	0	0	20	4	16.67	-	-	-	A	42875586	G	A	42875586	3	1	240	1	0	0	0	0	1	0	0	0	447	1291	45	2	2726	2	AKAP11	13	42875586	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	327	42875586	72294292	2905	21755										
LRCH1	0	genome.wustl.edu	37	chr13	47260119	47260119	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaatttgttttagagagatGaagcagctgcaagtgttact	10	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	47260119	47260119	G	C	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.765	p.M255I	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	69	0	0	63	16	20.25	-	-	-	C	47260119	G	C	47260119	3	2	240	1	0	0	0	0	1	0	0	0	8998	1290	45	2	783	2	LRCH1	13	47260119	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4384533	47260119	67909759	2906	21756										
HTR2A	0	genome.wustl.edu	37	chr13	47409028	47409028	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgtctttagaagcctcttCagaatgctgctttcctagag	8	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	47409028	47409028	C	A	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	nonsense	c.1360	p.E454*	0.160	prints_5HT2A_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	142	0	0	43	103	70.55	-	-	-	A	47409028	C	A	47409028	4	1	240	1	0	0	0	0	0	1	0	0	7495	835	29	2	59	2	HTR2A	13	47409028	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148909	47409028	67760850	2907	21757										
RB1	0	genome.wustl.edu	37	chr13	49039421	49039421	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttacggattcctggaggGaacatctatatttcacccct	7	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	49039421	49039421	G	C	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	silent	c.2406	p.G802	0.979	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	160	0	0	113	34	23.13	-	-	-	C	49039421	G	C	49039421	2	2	240	1	0	0	0	0	0	0	0	1	13181	1161	41	2		2	RB1	13	49039421	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1630393	49039421	66130457	2908	21758										
MLNR	0	genome.wustl.edu	37	chr13	49796261	49796261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacacggaagattcgcggatGatgtacttctctcagtactt	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	49796261	49796261	G	T	SNP	MLNR	ENST00000218721	human	ensembl	69_37n	1	known	missense	c.987	p.M329I	0.937	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GHS1_rcpt	-	no_errors	MLNR	HGNC	ENSG00000102539	83	0	0	75	21	21.88	-	-	-	T	49796261	G	T	49796261	3	4	240	1	0	0	0	0	1	0	0	0	9703	1290	45	2	993	2	MLNR	13	49796261	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	756840	49796261	65373617	2909	21759										
SETDB2	0	genome.wustl.edu	37	chr13	50034302	50034302	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaagtggacttcatttttGaacaagtacaaaatgtgctg	9	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	50034302	50034302	G	C	SNP	SETDB2	ENST00000317257	human	ensembl	69_37n	1	known	missense	c.76	p.E26Q	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169	116	0	0	69	17	19.77	-	-	-	C	50034302	G	C	50034302	3	2	240	1	0	0	0	0	1	0	0	0	14227	1291	45	2	82	2	SETDB2	13	50034302	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	238041	50034302	65135576	2910	21760										
PHF11	0	genome.wustl.edu	37	chr13	50097325	50097325	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctagccacccgaaacaatGaaatgtaatacattcataag	5	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	50097325	50097325	G	C	SNP	PHF11	ENST00000378319	human	ensembl	69_37n	1	known	missense	c.585	p.M195I	0.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147	61	0	0	32	34	51.52	-	-	-	C	50097325	G	C	50097325	3	2	240	1	0	0	0	0	1	0	0	0	11896	1290	45	2	611	2	PHF11	13	50097325	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	63023	50097325	65072553	2911	21761										
INTS6	0	genome.wustl.edu	37	chr13	51956203	51956203	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgtcttcaaataactttCaaatgactgtctccacttca	3	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	51956203	51956203	C	G	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413Q	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	72	0	0	35	26	42.62	-	-	-	G	51956203	C	G	51956203	3	3	240	1	0	0	0	0	1	0	0	0	7836	835	29	2	1462	2	INTS6	13	51956203	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1858878	51956203	63213675	2912	21762										
ATP7B	0	genome.wustl.edu	37	chr13	52523911	52523911	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatatccactaaaccggtCagccagctgctgaatgggtg	10	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	52523911	52523911	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	missense	c.2752	p.D918N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	62	0	0	52	20	27.78	-	-	-	T	52523911	C	T	52523911	3	4	240	1	0	0	0	0	1	0	0	0	1195	826	29	2	1685	2	ATP7B	13	52523911	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	567708	52523911	62645967	2913	21763										
PCDH17	0	genome.wustl.edu	37	chr13	58208748	58208748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggtgagcggatcccttcccGagggggtaccacgggtgaat	16	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	58208748	58208748	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	missense	c.2068	p.E690K	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	13	0	0	7	19	73.08	-	-	-	A	58208748	G	A	58208748	3	1	240	1	0	0	0	0	1	0	0	0	11585	1059	37	1	2070	1	PCDH17	13	58208748	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5684837	58208748	56961130	2914	21764										
KLHL1	0	genome.wustl.edu	37	chr13	70456546	70456546	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatcaggaacattgacatCatcactggccagtagtttat	7	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	70456546	70456546	C	T	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366N	1.000	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	74	0	0	73	15	17.05	-	-	-	T	70456546	C	T	70456546	3	4	240	1	0	0	0	0	1	0	0	0	8418	826	29	2	1178	2	KLHL1	13	70456546	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12247798	70456546	44713332	2915	21765										
PIBF1	0	genome.wustl.edu	37	chr13	73372093	73372093	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagaaaggaaatctgtgaaCtacaagtgaaaaagaatatc	8	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	73372093	73372093	C	G	SNP	PIBF1	ENST00000326291	human	ensembl	69_37n	1	known	missense	c.601	p.L201V	1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535	70	0	0	30	31	50.82	-	-	-	G	73372093	C	G	73372093	3	3	240	1	0	0	0	0	1	0	0	0	11953	564	20	4	615	4	PIBF1	13	73372093	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2915547	73372093	41797785	2916	21766										
MYCBP2	0	genome.wustl.edu	37	chr13	77673021	77673021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctgtgccccttggcttCttctgatcagcagtagtccg	9	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	77673021	77673021	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.8268	p.K2756N	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	104	0	0	92	46	32.86	-	-	-	G	77673021	C	G	77673021	3	3	240	1	0	0	0	0	1	0	0	0	10090	912	32	2	5880	2	MYCBP2	13	77673021	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4300928	77673021	37496857	2917	21767										
MYCBP2	0	genome.wustl.edu	37	chr13	77695616	77695616	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagtttgagaattctgatCcagaagagcttgttctacaa	10	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	77695616	77695616	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.8032	p.D2678H	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	61	0	0	83	20	19.42	-	-	-	G	77695616	C	G	77695616	3	3	240	1	0	0	0	0	1	0	0	0	10090	855	30	2	6120	2	MYCBP2	13	77695616	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22595	77695616	37474262	2918	21768										
MYCBP2	0	genome.wustl.edu	37	chr13	77764443	77764443	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtaccattatttgatttCtttgaactcttgaactggaa	6	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	77764443	77764443	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.4098	p.K1366N	1.000	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	138	0	0	106	36	25.35	-	-	-	G	77764443	C	G	77764443	3	3	240	1	0	0	0	0	1	0	0	0	10090	912	32	2	10158	2	MYCBP2	13	77764443	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	68827	77764443	37405435	2919	21769										
SLAIN1	0	genome.wustl.edu	37	chr13	78293699	78293699	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttcaaagacgttcacctCatcagagaaatccctgactc	5	14	5	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	78293699	78293699	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	1	known	missense	c.593	p.S198L	0.155	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	101	1	0.98	95	37	28.03	-	-	-	T	78293699	C	T	78293699	3	4	240	1	0	0	0	0	1	0	0	0	14454	841	29	2		2	SLAIN1	13	78293699	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	529256	78293699	36876179	2920	21770										
RNF219	0	genome.wustl.edu	37	chr13	79191224	79191224	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctcatactgttctactttGgactgaagagcagcaactgc	9	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	79191224	79191224	G	C	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	silent	c.672	p.S224	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	87	0	0	67	22	24.72	-	-	-	C	79191224	G	C	79191224	2	2	240	1	0	0	0	0	0	0	0	1	13568	1335	47	4		4	RNF219	13	79191224	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	897525	79191224	35978654	2921	21771										
RNF219	0	genome.wustl.edu	37	chr13	79212993	79212993	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatcatctttcactttttCatagatttcattagctgttc	3	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	79212993	79212993	C	G	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.514	p.E172Q	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	288	0	0	236	60	20.2	-	-	-	G	79212993	C	G	79212993	3	3	240	1	0	0	0	0	1	0	0	0	13568	835	29	2	1678	2	RNF219	13	79212993	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21769	79212993	35956885	2922	21772										
RNF219	0	genome.wustl.edu	37	chr13	79216331	79216331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtatggcttagcataggttCactttcacttgttcctcctg	8	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	79216331	79216331	C	T	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.226	p.E76K	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	171	0	0	103	57	35.62	-	-	-	T	79216331	C	T	79216331	3	4	240	1	0	0	0	0	1	0	0	0	13568	835	29	2	1970	2	RNF219	13	79216331	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3338	79216331	35953547	2923	21773										
RBM26	0	genome.wustl.edu	37	chr13	79943060	79943060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actaggtaccgaagagactgGagtataattattttctaatg	9	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	79943060	79943060	G	C	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	missense	c.700	p.P234A	1.000	NULL	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	128	0	0	70	54	43.55	-	-	-	C	79943060	G	C	79943060	3	2	240	1	0	0	0	0	1	0	0	0	13209	1174	41	2	2306	2	RBM26	13	79943060	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	726729	79943060	35226818	2924	21774										
SLITRK6	0	genome.wustl.edu	37	chr13	86369320	86369320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaatggcattgtattcaaGatataagtattcaagattat	6	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	86369320	86369320	G	C	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.1324	p.L442V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	38	0	0	40	11	21.57	-	-	-	C	86369320	G	C	86369320	3	2	240	1	0	0	0	0	1	0	0	0	14836	942	33	2	1205	2	SLITRK6	13	86369320	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6426260	86369320	28800558	2925	21775										
SLITRK5	0	genome.wustl.edu	37	chr13	88329645	88329645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccttgtctgtgttaattCtcagcctcctgctggttttc	8	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	88329645	88329645	C	G	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	missense	c.2002	p.L668V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	113	1	0.88	68	19	21.84	-	-	-	G	88329645	C	G	88329645	3	3	240	1	0	0	0	0	1	0	0	0	14835	913	32	2	2004	2	SLITRK5	13	88329645	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1960325	88329645	26840233	2926	21776										
ABCC4	0	genome.wustl.edu	37	chr13	95696656	95696656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctaattcagtatccatttTaccaggaagatcttcaatgg	7	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	95696656	95696656	T	C	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.3493	p.K1165E	0.999	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	57	0	0	43	10	18.87	-	-	-	C	95696656	T	C	95696656	3	2	240	1	0	0	0	0	1	0	0	0	55	1763	61	5	500	5	ABCC4	13	95696656	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	7367011	95696656	19473222	2927	21777										
UGGT2	0	genome.wustl.edu	37	chr13	96489359	96489359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagatcaattgttttggctCtttgtttggattcatcatca	7	8	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	96489359	96489359	C	G	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.4382	p.R1461T	0.997	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	185	0	0	178	30	14.42	-	-	-	G	96489359	C	G	96489359	3	3	240	1	0	0	0	0	1	0	0	0	17039	913	32	2	180	2	UGGT2	13	96489359	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	792703	96489359	18680519	2928	21778										
HS6ST3	0	genome.wustl.edu	37	chr13	96743542	96743542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcttcgtggatttcaacatCaaagggcgcgacgtgatcgt	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	96743542	96743542	C	G	SNP	HS6ST3	ENST00000376705	human	ensembl	69_37n	1	known	missense	c.426	p.I142M	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	35	0	0	25	10	28.57	-	-	-	G	96743542	C	G	96743542	3	3	240	1	0	0	0	0	1	0	0	0	7423	816	29	2	428	2	HS6ST3	13	96743542	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	254183	96743542	18426336	2929	21779										
DOCK9	0	genome.wustl.edu	37	chr13	99462537	99462537	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgctcaaggagctccatCagcacatcctgatcaaagag	8	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	99462537	99462537	C	G	SNP	DOCK9	ENST00000400228	human	ensembl	69_37n	-1	known	missense	c.832	p.D278H	1.000	superfamily_ARM-type_fold	pfam_DOCK,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK9	HGNC	ENSG00000088387	46	0	0	71	10	12.35	-	-	-	G	99462537	C	G	99462537	3	3	240	1	0	0	0	0	1	0	0	0	4729	813	29	2	1103	2	DOCK9	13	99462537	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2718995	99462537	15707341	2930	21780										
DOCK9	0	genome.wustl.edu	37	chr13	99540897	99540897	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacacttactagggaagtctGaggaaacattatcaattgta	9	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	99540897	99540897	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.1781	p.S594L	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	98	0	0	37	68	64.76	-	-	-	A	99540897	G	A	99540897	3	1	240	1	0	0	0	0	1	0	0	0	4729	1294	45	2	4653	2	DOCK9	13	99540897	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	78360	99540897	15628981	2931	21781										
KDELC1	0	genome.wustl.edu	37	chr13	103443633	103443633	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggtttccagaacagaatCagtcaaatcgtacgtaggca	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	103443633	103443633	C	T	SNP	KDELC1	ENST00000376004	human	ensembl	69_37n	-1	known	missense	c.820	p.D274N	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901	91	0	0	80	26	24.53	-	-	-	T	103443633	C	T	103443633	3	4	240	1	0	0	0	0	1	0	0	0	8171	826	29	2	712	2	KDELC1	13	103443633	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3902736	103443633	11726245	2932	21782										
KDELC1	0	genome.wustl.edu	37	chr13	103449214	103449214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatttaatttccaccttcaGatttttgtagcttgcataca	5	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	103449214	103449214	G	C	SNP	KDELC1	ENST00000376004	human	ensembl	69_37n	-1	known	missense	c.328	p.L110V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901	235	0	0	45	150	76.92	-	-	-	C	103449214	G	C	103449214	3	2	240	1	0	0	0	0	1	0	0	0	8171	933	33	2	1216	2	KDELC1	13	103449214	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5581	103449214	11720664	2933	21783										
COL4A1	0	genome.wustl.edu	37	chr13	110827075	110827075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctccagggcttcctgggaAacccgctatcccttgatctc	8	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	110827075	110827075	A	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.3220	p.F1074I	0.445	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	53	0	0	29	22	43.14	-	-	-	T	110827075	A	T	110827075	3	4	240	1	0	0	0	0	1	0	0	0	3719	14	1	5	1849	5	COL4A1	13	110827075	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	7377861	110827075	4342803	2934	21784										
COL4A2	0	genome.wustl.edu	37	chr13	111088619	111088619	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcttaacaatatgcagggtGacgtagggcagccgggaccc	14	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	111088619	111088619	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.730	p.D244N	0.979	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	84	0	0	42	44	51.16	-	-	-	A	111088619	G	A	111088619	3	1	240	1	0	0	0	0	1	0	0	0	3720	1290	45	2	776	2	COL4A2	13	111088619	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	261544	111088619	4081259	2935	21785										
CARKD	0	genome.wustl.edu	37	chr13	111290693	111290693	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggaccacgacgcccacttCcccacacctcctgctgtccc	6	23	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	111290693	111290693	C	A	SNP	CARKD	ENST00000309957	human	ensembl	69_37n	1	known	missense	c.998	p.S333Y	0.000	NULL	pfam_UPF_carb_kinase-rel,tigrfam_UPF_carb_kinase-rel	-	no_errors	CARKD	HGNC	ENSG00000213995	41	0	0	22	6	21.43	-	-	-	A	111290693	C	A	111290693	3	1	240	1	0	0	0	0	1	0	0	0	2679	855	30	2	1036	2	CARKD	13	111290693	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	202074	111290693	3879185	2936	21786										
ING1	0	genome.wustl.edu	37	chr13	111367939	111367939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggagcggggtggagggtgGacgagttgatttgaacgtct	20	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	111367939	111367939	G	T	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	missense	c.149	p.G50V	0.916	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	101	0	0	48	51	51.52	-	-	-	T	111367939	G	T	111367939	3	4	240	1	0	0	0	0	1	0	0	0	7789	1174	41	2	299	2	ING1	13	111367939	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77246	111367939	3801939	2937	21787										
ATP11A	0	genome.wustl.edu	37	chr13	113460601	113460601	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcattactgtgacggctatCaaacaggtaagcattttaca	8	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	113460601	113460601	C	G	SNP	ATP11A	ENST00000418678	human	ensembl	69_37n	1	novel	nonsense	c.251	p.S84*	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP11A	HGNC	ENSG00000068650	86	0	0	31	41	56.94	-	-	-	G	113460601	C	G	113460601	4	3	240	1	0	0	0	0	0	1	0	0	1123	816	29	2	341	2	ATP11A	13	113460601	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2092662	113460601	1709277	2938	21788										
ATP11A	0	genome.wustl.edu	37	chr13	113505389	113505389	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgttgcttataaaaggctGatccaagaagaatatgaagg	11	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	113505389	113505389	G	A	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	silent	c.1848	p.L616	0.083	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	117	0	0	65	50	43.48	-	-	-	A	113505389	G	A	113505389	2	1	240	1	0	0	0	0	0	0	0	1	1123	1277	45	2		2	ATP11A	13	113505389	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44788	113505389	1664489	2939	21789										
MCF2L	0	genome.wustl.edu	37	chr13	113748923	113748923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcgtccgacgcagaggagGacggcgggttgggccccaag	17	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	113748923	113748923	G	A	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	missense	c.3220	p.D1074N	1.000	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	45	0	0	24	11	31.43	-	-	-	A	113748923	G	A	113748923	3	1	240	1	0	0	0	0	1	0	0	0	9450	1174	41	2	3421	2	MCF2L	13	113748923	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	243534	113748923	1420955	2940	21790										
TFDP1	0	genome.wustl.edu	37	chr13	114285955	114285955	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taggtaattggtacgcctcaGagaccggcagcgtcaaacac	11	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	13	114285955	114285955	G	C	SNP	TFDP1	ENST00000375370	human	ensembl	69_37n	1	known	missense	c.204	p.Q68H	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP1	HGNC	ENSG00000198176	87	0	0	89	34	27.64	-	-	-	C	114285955	G	C	114285955	3	2	240	1	0	0	0	0	1	0	0	0	15892	933	33	2	218	2	TFDP1	13	114285955	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	537032	114285955	883923	2941	21791										
OR11H12	0	genome.wustl.edu	37	chr14	19378131	19378131	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccccattgttctcatctctCagatgcccttctgtggccca	6	16	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	19378131	19378131	C	T	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	nonsense	c.538	p.Q180*	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	385	0	0	321	65	16.84	-	-	-	T	19378131	C	T	19378131	4	4	240	1	0	0	0	0	0	1	0	0	11000	827	29	2	540	2	OR11H12	14	19378131	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		19378131	87971409	2942	21792										
POTEG	0	genome.wustl.edu	37	chr14	19571371	19571371	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagacttaaagctgacatcaGaggaagagtcacaaaggctt	10	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	19571371	19571371	G	C	SNP	POTEG	ENST00000409832	human	ensembl	69_37n	1	known	missense	c.1150	p.E384Q	0.184	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036	331	0	0	244	33	11.91	-	-	-	C	19571371	G	C	19571371	3	2	240	1	0	0	0	0	1	0	0	0	12340	943	33	2	1176	2	POTEG	14	19571371	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	193240	19571371	87778169	2943	21793										
OR4K14	0	genome.wustl.edu	37	chr14	20482895	20482895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactgatggagtgcacaaatCcaacgacccatgaagccagc	10	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	20482895	20482895	C	T	SNP	OR4K14	ENST00000305045	human	ensembl	69_37n	-1	known	missense	c.458	p.G153E	0.911	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K14	HGNC	ENSG00000169484	58	0	0	64	9	12.33	-	-	-	T	20482895	C	T	20482895	3	4	240	1	0	0	0	0	1	0	0	0	11142	855	30	2	477	2	OR4K14	14	20482895	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	911524	20482895	86866645	2944	21794										
APEX1	0	genome.wustl.edu	37	chr14	20925575	20925575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgattactttttgttgtccCactctctgttacctgcattg	6	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	20925575	20925575	C	T	SNP	APEX1	ENST00000216714	human	ensembl	69_37n	1	known	missense	c.865	p.H289Y	0.005	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX1	HGNC	ENSG00000100823	60	0	0	30	18	37.5	-	-	-	T	20925575	C	T	20925575	3	4	240	1	0	0	0	0	1	0	0	0	770	594	21	4	879	4	APEX1	14	20925575	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	442680	20925575	86423965	2945	21795										
NDRG2	0	genome.wustl.edu	37	chr14	21490555	21490555	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatgaaggtccttacagttGagtcccacatcgtggtaggt	12	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	21490555	21490555	G	C	SNP	NDRG2	ENST00000298687	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG2	HGNC	ENSG00000165795	105	0	0	104	32	23.53	-	-	-	C	21490555	G	C	21490555	2	2	240	1	0	0	0	0	0	0	0	1	10324	1277	45	2		2	NDRG2	14	21490555	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	564980	21490555	85858985	2946	21796										
TPPP2	0	genome.wustl.edu	37	chr14	21500191	21500191	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgacaacacaggctatgtGagtggttacaagggttctgg	13	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	21500191	21500191	G	A	SNP	TPPP2	ENST00000321760	human	ensembl	69_37n	1	known	silent	c.468	p.V156	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP2	HGNC	ENSG00000179636	92	0	0	42	56	57.14	-	-	-	A	21500191	G	A	21500191	2	1	240	1	0	0	0	0	0	0	0	1	16510	1277	45	2		2	TPPP2	14	21500191	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9636	21500191	85849349	2947	21797										
SUPT16H	0	genome.wustl.edu	37	chr14	21837945	21837945	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttccatgactctttccttGaagaatttgttgaagacttc	6	8	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	21837945	21837945	G	T	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.594	p.F198L	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	108	0	0	83	26	23.85	-	-	-	T	21837945	G	T	21837945	3	4	240	1	0	0	0	0	1	0	0	0	15487	1281	45	2	2637	2	SUPT16H	14	21837945	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	337754	21837945	85511595	2948	21798										
CHD8	0	genome.wustl.edu	37	chr14	21868196	21868196	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctccaataacctcctgcctCaggtagtatagcattcgtac	6	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	21868196	21868196	C	T	SNP	CHD8	ENST00000555935	human	ensembl	69_37n	-1	novel	missense	c.2461	p.E821K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	CHD8	HGNC	ENSG00000100888	100	0	0	96	30	23.81	-	-	-	T	21868196	C	T	21868196	3	4	240	1	0	0	0	0	1	0	0	0	3360	813	29	2	3040	2	CHD8	14	21868196	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30251	21868196	85481344	2949	21799										
CHD8	0	genome.wustl.edu	37	chr14	21873580	21873580	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcaacatcctctttgagtCttctcagcatcattggctta	5	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	21873580	21873580	C	G	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.3095	p.R1032T	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	94	0	0	36	52	59.09	-	-	-	G	21873580	C	G	21873580	3	3	240	1	0	0	0	0	1	0	0	0	3360	913	32	2	4742	2	CHD8	14	21873580	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5384	21873580	85475960	2950	21800										
OR10G2	0	genome.wustl.edu	37	chr14	22102971	22102971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatctgtcaccacggcatCcagcgatgtgtttttggtct	10	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	22102971	22102971	C	G	SNP	OR10G2	ENST00000542433	human	ensembl	69_37n	-1	known	missense	c.28	p.D10H	0.957	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582	22	0	0	14	6	30	-	-	-	G	22102971	C	G	22102971	3	3	240	1	0	0	0	0	1	0	0	0	10972	855	30	2	907	2	OR10G2	14	22102971	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	229391	22102971	85246569	2951	21801										
MMP14	0	genome.wustl.edu	37	chr14	23311917	23311917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttggactgtcaggaatgagGatctgaatggtgagccaagt	14	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23311917	23311917	G	A	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	1	known	missense	c.679	p.D227N	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	28	0	0	40	7	14.89	-	-	-	A	23311917	G	A	23311917	3	1	240	1	0	0	0	0	1	0	0	0	9724	1174	41	2	693	2	MMP14	14	23311917	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1208946	23311917	84037623	2952	21802										
PRMT5	0	genome.wustl.edu	37	chr14	23398425	23398425	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttctccgtccccgagttcgGaccccgcattccgctcgtgg	10	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23398425	23398425	G	C	SNP	PRMT5	ENST00000397441	human	ensembl	69_37n	-1	known	missense	c.10	p.P4A	0.125	pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	54	0	0	50	10	16.67	-	-	-	C	23398425	G	C	23398425	3	2	240	1	0	0	0	0	1	0	0	0	12620	1174	41	2	1920	2	PRMT5	14	23398425	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	86508	23398425	83951115	2953	21803										
C14orf93	0	genome.wustl.edu	37	chr14	23456601	23456601	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgggcttcagcagaaggCagtctgtctgagggaggccc	16	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23456601	23456601	C	T	SNP	C14orf93	ENST00000299088	human	ensembl	69_37n	-1	known	silent	c.1440	p.L480	0.957	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802	86	0	0	40	39	48.75	-	-	-	T	23456601	C	T	23456601	2	4	240	1	0	0	0	0	0	0	0	1	1794	697	25	4		4	C14orf93	14	23456601	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	58176	23456601	83892939	2954	21804										
CDH24	0	genome.wustl.edu	37	chr14	23523780	23523780	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagtcaccgtagtgctgcctGacagcccccccatgtggccg	11	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23523780	23523780	G	C	SNP	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	nonsense	c.719	p.S240*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	60	0	0	34	18	34.62	-	-	-	C	23523780	G	C	23523780	4	2	240	1	0	0	0	0	0	1	0	0	3138	1294	45	2	1776	2	CDH24	14	23523780	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67179	23523780	83825760	2955	21805										
IL25	0	genome.wustl.edu	37	chr14	23842573	23842573	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagtgaagatggacccctCaacagcagggccatctcccc	10	16	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23842573	23842573	C	T	SNP	IL25	ENST00000329715	human	ensembl	69_37n	1	known	silent	c.246	p.L82	1.000	pfam_Interleukin-17	pfam_Interleukin-17	-	no_errors	IL25	HGNC	ENSG00000166090	33	0	0	29	12	29.27	-	-	-	T	23842573	C	T	23842573	2	4	240	1	0	0	0	0	0	0	0	1	7732	813	29	2		2	IL25	14	23842573	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	318793	23842573	83506967	2956	21806										
MYH7	0	genome.wustl.edu	37	chr14	23884290	23884290	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttctgctcggcctccagctCattctccagctcccgcaccc	6	21	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23884290	23884290	C	G	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.5473	p.E1825Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	104	0	0	74	18	19.57	-	-	-	G	23884290	C	G	23884290	3	3	240	1	0	0	0	0	1	0	0	0	10111	835	29	2	350	2	MYH7	14	23884290	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41717	23884290	83465250	2957	21807										
MYH7	0	genome.wustl.edu	37	chr14	23887429	23887429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaactcacttggcctcctCgagctcctcagtccgctgaa	8	16	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23887429	23887429	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4159	p.E1387K	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	71	0	0	43	17	28.33	-	-	-	T	23887429	C	T	23887429	3	4	240	1	0	0	0	0	1	0	0	0	10111	893	31	1	1692	1	MYH7	14	23887429	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3139	23887429	83462111	2958	21808										
NGDN	0	genome.wustl.edu	37	chr14	23946772	23946772	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtcggaagaaaaaaggtCagtgaactgctgggacttag	14	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	23946772	23946772	C	T	SNP	NGDN	ENST00000397154	human	ensembl	69_37n	1	known	nonsense	c.931	p.Q311*	0.995	NULL	pfam_Sas10/Utp3/C1D	-	no_errors	NGDN	HGNC	ENSG00000129460	91	0	0	76	13	14.61	-	-	-	T	23946772	C	T	23946772	4	4	240	1	0	0	0	0	0	1	0	0	10465	827	29	2	969	2	NGDN	14	23946772	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	59343	23946772	83402768	2959	21809										
DCAF11	0	genome.wustl.edu	37	chr14	24588993	24588993	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaatcctgttctctggggGagatgatgccatctgcaaag	11	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24588993	24588993	G	C	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.980	p.G327A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	93	0	0	82	20	19.61	-	-	-	C	24588993	G	C	24588993	3	2	240	1	0	0	0	0	1	0	0	0	4294	1174	41	2	1018	2	DCAF11	14	24588993	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	642221	24588993	82760547	2960	21810										
RNF31	0	genome.wustl.edu	37	chr14	24626762	24626762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagttctcgtacgccctggCccgaggaggctgcatgcact	12	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24626762	24626762	C	T	SNP	RNF31	ENST00000324103	human	ensembl	69_37n	1	known	missense	c.2642	p.A881V	1.000	smart_Znf_C6HC	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098	68	0	0	42	27	39.13	-	-	-	T	24626762	C	T	24626762	3	4	240	1	0	0	0	0	1	0	0	0	13573	739	26	4	2704	4	RNF31	14	24626762	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37769	24626762	82722778	2961	21811										
MDP1	0	genome.wustl.edu	37	chr14	24684867	24684867	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctatctcgtacagttccatCactggagagggcaagagtgc	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24684867	24684867	C	T	SNP	MDP1	ENST00000288087	human	ensembl	69_37n	-1	known	missense	c.100	p.D34N	0.997	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	-	no_errors	MDP1	HGNC	ENSG00000213920	69	0	0	58	17	22.67	-	-	-	T	24684867	C	T	24684867	3	4	240	1	0	0	0	0	1	0	0	0	9487	840	29	2	446	2	MDP1	14	24684867	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	58105	24684867	82664673	2962	21812										
GMPR2	0	genome.wustl.edu	37	chr14	24707568	24707568	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttctatggaatgagttctGaaatggccatgaagaagtat	10	5	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24707568	24707568	G	C	SNP	GMPR2	ENST00000348719	human	ensembl	69_37n	1	known	missense	c.814	p.E272Q	1.000	pfam_IMP_DH_GMPRt,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pfam_FMN-dep_DH,tigrfam_GMP_reduct1	-	no_errors	GMPR2	HGNC	ENSG00000100938	106	0	0	81	27	25	-	-	-	C	24707568	G	C	24707568	3	2	240	1	0	0	0	0	1	0	0	0	6549	1291	45	2	898	2	GMPR2	14	24707568	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22701	24707568	82641972	2963	21813										
TGM1	0	genome.wustl.edu	37	chr14	24731556	24731556	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggaacgtggcccatccatCatgcctgttaggaagaggca	12	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24731556	24731556	C	T	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.170	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	9	0	0	18	5	21.74	-	-	-	T	24731556	C	T	24731556	3	4	240	1	0	0	0	0	1	0	0	0	15924	826	29	2	2506	2	TGM1	14	24731556	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23988	24731556	82617984	2964	21814										
ADCY4	0	genome.wustl.edu	37	chr14	24795528	24795528	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggctccactgggtgctGaaggaagccagggtcttctc	13	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24795528	24795528	G	A	SNP	ADCY4	ENST00000556932	human	ensembl	69_37n	-1	putative	missense	c.263	p.S88L	1.000	pfam_Adenylate_cyclase-like	pfam_Adenylate_cyclase-like	-	no_start_codon:pseudogene:no_stop_codon	ADCY4	HGNC	ENSG00000129467	41	0	0	43	14	24.56	-	-	-	A	24795528	G	A	24795528	3	1	240	1	0	0	0	0	1	0	0	0	296	1281	45	2	1748	2	ADCY4	14	24795528	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	63972	24795528	82554012	2965	21815										
NYNRIN	0	genome.wustl.edu	37	chr14	24885065	24885065	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctttggccagtccccactCccagtggttttcctcactca	7	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	24885065	24885065	C	A	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	silent	c.4110	p.L1370	0.013	superfamily_RNaseH-like_dom	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	59	0	0	54	23	29.87	-	-	-	A	24885065	C	A	24885065	2	1	240	1	0	0	0	0	0	0	0	1	10869	842	30	2		2	NYNRIN	14	24885065	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89537	24885065	82464475	2966	21816										
FOXG1	0	genome.wustl.edu	37	chr14	29237811	29237811	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagggccgcgtcctcctcCacgtcgccgcaggccccctc	11	22	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	29237811	29237811	C	T	SNP	FOXG1	ENST00000313071	human	ensembl	69_37n	1	known	silent	c.1326	p.S442	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165	40	0	0	44	8	15.38	-	-	-	T	29237811	C	T	29237811	2	4	240	1	0	0	0	0	0	0	0	1	6055	581	21	4		4	FOXG1	14	29237811	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4352746	29237811	78111729	2967	21817										
AP4S1	0	genome.wustl.edu	37	chr14	31549780	31549780	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctttttctgtcttccagaGtgaattagatgtatcctttt	6	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	31549780	31549780	G	C	SNP	AP4S1	ENST00000216366	human	ensembl	69_37n	1	known	missense	c.296	p.S99T	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP4S1	HGNC	ENSG00000100478	202	0	0	154	51	24.88	-	-	-	C	31549780	G	C	31549780	3	2	240	1	0	0	0	0	1	0	0	0	755	1043	36	4	310	4	AP4S1	14	31549780	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2311969	31549780	75799760	2968	21818										
HEATR5A	0	genome.wustl.edu	37	chr14	31852862	31852862	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttcaaggcaacgatccaaGagtggtgttaggtaggaggg	16	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	31852862	31852862	G	A	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.344	p.S115F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	67	0	0	27	32	54.24	-	-	-	A	31852862	G	A	31852862	3	1	240	1	0	0	0	0	1	0	0	0	7082	929	33	2	4787	2	HEATR5A	14	31852862	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	303082	31852862	75496678	2969	21819										
KIAA0391	0	genome.wustl.edu	37	chr14	35649884	35649884	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctttattaggaacttaaGagatttgagaacttcataaa	6	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	35649884	35649884	G	C	SNP	KIAA0391	ENST00000534898	human	ensembl	69_37n	1	known	missense	c.1176	p.K392N	0.948	NULL	NULL	-	no_errors	RP11-173D9.3	Clone_based_vega_gene	ENSG00000100890	178	0	0	108	45	29.41	-	-	-	C	35649884	G	C	35649884	3	2	240	1	0	0	0	0	1	0	0	0	8224	933	33	2	1190	2	KIAA0391	14	35649884	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3797022	35649884	71699656	2970	21820										
FOXA1	0	genome.wustl.edu	37	chr14	38061313	38061313	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccaccttgacgaagcagtCattgaaggacagcgagtggc	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	38061313	38061313	C	T	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.676	p.D226N	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	49	0	0	23	27	54	-	-	-	T	38061313	C	T	38061313	3	4	240	1	0	0	0	0	1	0	0	0	6035	826	29	2	746	2	FOXA1	14	38061313	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2411429	38061313	69288227	2971	21821										
PNN	0	genome.wustl.edu	37	chr14	39645775	39645775	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggacccccagccaaacagaGagaccttgaaggggcagtca	12	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	39645775	39645775	G	C	SNP	PNN	ENST00000216832	human	ensembl	69_37n	1	known	missense	c.230	p.R77T	1.000	pfam_Pinin_SDK_N	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941	150	0	0	82	29	26.13	-	-	-	C	39645775	G	C	39645775	3	2	240	1	0	0	0	0	1	0	0	0	12234	942	33	2	240	2	PNN	14	39645775	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1584462	39645775	67703765	2972	21822										
MIA2	0	genome.wustl.edu	37	chr14	39722147	39722147	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgataactctttgtcttCtcaaaattatatttctcaga	3	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	39722147	39722147	C	T	SNP	MIA2	ENST00000280082	human	ensembl	69_37n	1	novel	missense	c.1763	p.S588F	0.028	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526	103	0	0	73	18	19.78	-	-	-	T	39722147	C	T	39722147	3	4	240	1	0	0	0	0	1	0	0	0	9635	913	32	2	1781	2	MIA2	14	39722147	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	76372	39722147	67627393	2973	21823										
FAM179B	0	genome.wustl.edu	37	chr14	45512944	45512944	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttagctgcttttcattctGagatactgaacacaaagttg	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	45512944	45512944	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.3868	p.E1290K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	88	0	0	62	24	27.91	-	-	-	A	45512944	G	A	45512944	3	1	240	1	0	0	0	0	1	0	0	0	5546	1291	45	2	3914	2	FAM179B	14	45512944	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5790797	45512944	61836596	2974	21824										
FANCM	0	genome.wustl.edu	37	chr14	45665674	45665674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtcaataagaacaagttCattgagcagatccagcacct	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	45665674	45665674	C	T	SNP	FANCM	ENST00000554809	human	ensembl	69_37n	1	novel	missense	c.2542	p.H848Y	0.007	superfamily_Restrct_endonuc-II-like,smart_ERCC4_domain	superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FANCM	HGNC	ENSG00000187790	64	0	0	43	10	18.87	-	-	-	T	45665674	C	T	45665674	3	4	240	1	0	0	0	0	1	0	0	0	5717	825	29	2	5722	2	FANCM	14	45665674	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	152730	45665674	61683866	2975	21825										
MDGA2	0	genome.wustl.edu	37	chr14	47351424	47351424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaccagcgctgctgtccagCctgaaatcaaaacaataata	6	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	47351424	47351424	C	T	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.2239	p.A747T	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	91	0	0	41	14	25.45	-	-	-	T	47351424	C	T	47351424	3	4	240	1	0	0	0	0	1	0	0	0	9478	753	26	4	866	4	MDGA2	14	47351424	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1685750	47351424	59998116	2976	21826										
RPS29	0	genome.wustl.edu	37	chr14	50053006	50053006	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaaactatttctcaccaaGagcgagaaccctggccgaat	7	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	50053006	50053006	G	A	SNP	RPS29	ENST00000396020	human	ensembl	69_37n	-1	known	missense	c.59	p.S20F	1.000	pfam_Ribosomal_S14	pfam_Ribosomal_S14	-	no_errors	RPS29	HGNC	ENSG00000213741	67	0	0	53	15	22.06	-	-	-	A	50053006	G	A	50053006	3	1	240	1	0	0	0	0	1	0	0	0	13728	942	33	2	169	2	RPS29	14	50053006	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2701582	50053006	57296534	2977	21827										
POLE2	0	genome.wustl.edu	37	chr14	50117145	50117145	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagatgtccttgggataaGatagtctttacaaactacaa	8	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	50117145	50117145	G	C	SNP	POLE2	ENST00000216367	human	ensembl	69_37n	-1	known	missense	c.1335	p.I445M	0.003	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479	66	0	0	35	35	50	-	-	-	C	50117145	G	C	50117145	3	2	240	1	0	0	0	0	1	0	0	0	12271	932	33	2	260	2	POLE2	14	50117145	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64139	50117145	57232395	2978	21828										
SOS2	0	genome.wustl.edu	37	chr14	50597447	50597447	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgtgttaggccttattcCaggagattttaaggaaaaag	11	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	50597447	50597447	C	A	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	nonsense	c.3109	p.G1037*	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	105	0	0	58	28	32.56	-	-	-	A	50597447	C	A	50597447	4	1	240	1	0	0	0	0	0	1	0	0	15026	603	21	4	905	4	SOS2	14	50597447	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	480302	50597447	56752093	2979	21829										
SOS2	0	genome.wustl.edu	37	chr14	50655412	50655412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctgatcaaacatgtccaTcaaaacctgagaaacagaaa	5	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	50655412	50655412	T	C	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	missense	c.517	p.M173V	1.000	superfamily_Histone-fold	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	80	0	0	51	9	15	-	-	-	C	50655412	T	C	50655412	3	2	240	1	0	0	0	0	1	0	0	0	15026	1435	50	5	3557	5	SOS2	14	50655412	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	57965	50655412	56694128	2980	21830										
L2HGDH	0	genome.wustl.edu	37	chr14	50769675	50769675	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgatggatgtcgcaggatGagtgctctggcagaggcaag	17	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	50769675	50769675	G	A	SNP	L2HGDH	ENST00000267436	human	ensembl	69_37n	-1	known	silent	c.201	p.L67	0.989	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	L2HGDH	HGNC	ENSG00000087299	75	0	0	52	20	27.78	-	-	-	A	50769675	G	A	50769675	2	1	240	1	0	0	0	0	0	0	0	1	8644	1277	45	2		2	L2HGDH	14	50769675	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	114263	50769675	56579865	2981	21831										
NID2	0	genome.wustl.edu	37	chr14	52477661	52477661	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagaagaggaccttgcgctCagagccatccagcagggcgc	14	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	52477661	52477661	C	T	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.3655	p.E1219K	0.914	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	80	0	0	51	22	30.14	-	-	-	T	52477661	C	T	52477661	3	4	240	1	0	0	0	0	1	0	0	0	10487	835	29	2	492	2	NID2	14	52477661	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1707986	52477661	54871879	2982	21832										
TXNDC16	0	genome.wustl.edu	37	chr14	52936807	52936807	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgacacactagaatacaaGatgaggtctttatataattc	6	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	52936807	52936807	G	C	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	missense	c.1566	p.I522M	0.002	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	111	0	0	76	20	20.83	-	-	-	C	52936807	G	C	52936807	3	2	240	1	0	0	0	0	1	0	0	0	16892	932	33	2	935	2	TXNDC16	14	52936807	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	459146	52936807	54412733	2983	21833										
WDHD1	0	genome.wustl.edu	37	chr14	55429552	55429552	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaccttggttggctccactCtgtagcagtattgctgtaac	10	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	55429552	55429552	C	G	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	missense	c.2551	p.E851Q	1.000	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	196	0	0	148	62	29.52	-	-	-	G	55429552	C	G	55429552	3	3	240	1	0	0	0	0	1	0	0	0	17368	922	32	2	866	2	WDHD1	14	55429552	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2492745	55429552	51919988	2984	21834										
MAPK1IP1L	0	genome.wustl.edu	37	chr14	55529446	55529446	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaacccttggaataatccGagtgctccatcttcagtgcc	7	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	55529446	55529446	G	A	SNP	MAPK1IP1L	ENST00000395468	human	ensembl	69_37n	1	known	silent	c.129	p.P43	0.902	NULL	NULL	-	no_errors	MAPK1IP1L	HGNC	ENSG00000168175	47	0	0	27	24	46.15	-	-	-	A	55529446	G	A	55529446	2	1	240	1	0	0	0	0	0	0	0	1	9349	1045	37	1		1	MAPK1IP1L	14	55529446	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99894	55529446	51820094	2985	21835										
TBPL2	0	genome.wustl.edu	37	chr14	55900357	55900357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcctcataccttttggctCccgtgcagaccatcttccca	5	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	55900357	55900357	C	T	SNP	TBPL2	ENST00000247219	human	ensembl	69_37n	-1	known	missense	c.779	p.G260E	1.000	pfam_TBP,prints_TBP	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521	113	0	0	75	24	24.24	-	-	-	T	55900357	C	T	55900357	3	4	240	1	0	0	0	0	1	0	0	0	15741	855	30	2	364	2	TBPL2	14	55900357	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	370911	55900357	51449183	2986	21836										
PELI2	0	genome.wustl.edu	37	chr14	56763422	56763422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttttcatactccaactcaGaagcacatagaagccctccg	5	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	56763422	56763422	G	C	SNP	PELI2	ENST00000267460	human	ensembl	69_37n	1	known	missense	c.801	p.Q267H	1.000	pfam_Pellino	pfam_Pellino	-	no_errors	PELI2	HGNC	ENSG00000139946	46	0	0	23	11	32.35	-	-	-	C	56763422	G	C	56763422	3	2	240	1	0	0	0	0	1	0	0	0	11795	933	33	2	823	2	PELI2	14	56763422	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	863065	56763422	50586118	2987	21837										
RTN1	0	genome.wustl.edu	37	chr14	60213020	60213020	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgggtgtacccagctcctCagggctctctgaaatggtga	13	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	60213020	60213020	C	T	SNP	RTN1	ENST00000267484	human	ensembl	69_37n	-1	known	missense	c.421	p.E141K	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	49	0	0	56	12	17.65	-	-	-	T	60213020	C	T	60213020	3	4	240	1	0	0	0	0	1	0	0	0	13811	835	29	2	2006	2	RTN1	14	60213020	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3449598	60213020	47136520	2988	21838										
SYT16	0	genome.wustl.edu	37	chr14	62542004	62542004	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagtgtggtccaaagcctCaggcgccaatccacagaggg	12	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	62542004	62542004	C	A	SNP	SYT16	ENST00000446982	human	ensembl	69_37n	1	known	silent	c.888	p.L296	0.501	NULL	NULL	-	no_errors	SYT16	HGNC	ENSG00000139973	76	0	0	46	46	50	-	-	-	A	62542004	C	A	62542004	2	1	240	1	0	0	0	0	0	0	0	1	15564	813	29	2		2	SYT16	14	62542004	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2328984	62542004	44807536	2989	21839										
KCNH5	0	genome.wustl.edu	37	chr14	63316565	63316565	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaaaaatagttgcataaaGaagagctgaaagagaagaaa	9	4	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	63316565	63316565	G	C	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	missense	c.1375	p.L459V	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	101	0	0	68	31	31	-	-	-	C	63316565	G	C	63316565	3	2	240	1	0	0	0	0	1	0	0	0	8089	942	33	2	1641	2	KCNH5	14	63316565	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	774561	63316565	44032975	2990	21840										
PPP2R5E	0	genome.wustl.edu	37	chr14	63920533	63920533	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatcagatagcgtgtccatGaagtcaaaaatgacacagca	9	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	63920533	63920533	G	C	SNP	PPP2R5E	ENST00000337537	human	ensembl	69_37n	-1	known	missense	c.228	p.F76L	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001	133	0	0	81	37	31.36	-	-	-	C	63920533	G	C	63920533	3	2	240	1	0	0	0	0	1	0	0	0	12473	1281	45	2	1223	2	PPP2R5E	14	63920533	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	603968	63920533	43429007	2991	21841										
SYNE2	0	genome.wustl.edu	37	chr14	64483218	64483218	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtcaaagaagaatttaatGagcatttagaagttgtagac	9	3	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	64483218	64483218	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.4756	p.E1586Q	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	37	0	0	18	10	35.71	-	-	-	C	64483218	G	C	64483218	3	2	240	1	0	0	0	0	1	0	0	0	15538	1291	45	2	4882	2	SYNE2	14	64483218	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	562685	64483218	42866322	2992	21842										
SYNE2	0	genome.wustl.edu	37	chr14	64632077	64632077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttattatgcatgaagaagaGaatttggatagacttcacca	8	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	64632077	64632077	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.16554	p.E5518D	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	140	0	0	97	25	20.49	-	-	-	C	64632077	G	C	64632077	3	2	240	1	0	0	0	0	1	0	0	0	15538	933	33	2	16908	2	SYNE2	14	64632077	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	148859	64632077	42717463	2993	21843										
SYNE2	0	genome.wustl.edu	37	chr14	64635624	64635624	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgaagtttctataaaccaGacaattgctgattcctatgt	7	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	64635624	64635624	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.16935	p.Q5645H	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	76	0	0	70	15	17.44	-	-	-	C	64635624	G	C	64635624	3	2	240	1	0	0	0	0	1	0	0	0	15538	933	33	2	17301	2	SYNE2	14	64635624	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3547	64635624	42713916	2994	21844										
MTHFD1	0	genome.wustl.edu	37	chr14	64867571	64867571	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggagcaagtacctggtttCacaccacgcctggcaatatt	9	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	64867571	64867571	C	T	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	silent	c.270	p.F90	0.032	pfam_THF_DH/CycHdrlase_cat_dom	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	169	0	0	76	64	45.71	-	-	-	T	64867571	C	T	64867571	2	4	240	1	0	0	0	0	0	0	0	1	9999	825	29	2		2	MTHFD1	14	64867571	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	231947	64867571	42481969	2995	21845										
ZBTB1	0	genome.wustl.edu	37	chr14	64988426	64988426	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactgaatctcagcaacatGaaaattagtgcagaatgttt	7	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	64988426	64988426	G	A	SNP	ZBTB1	ENST00000394712	human	ensembl	69_37n	1	known	missense	c.204	p.M68I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB1	HGNC	ENSG00000126804	89	0	0	74	22	22.68	-	-	-	A	64988426	G	A	64988426	3	1	240	1	0	0	0	0	1	0	0	0	17618	1290	45	2	206	2	ZBTB1	14	64988426	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	120855	64988426	42361114	2996	21846										
PLEKHG3	0	genome.wustl.edu	37	chr14	65194521	65194521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctccctgagaagccggcatCtgcccaacagcaacaacaac	8	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	65194521	65194521	C	G	SNP	PLEKHG3	ENST00000394691	human	ensembl	69_37n	1	known	missense	c.172	p.L58V	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	14	0	0	9	7	43.75	-	-	-	G	65194521	C	G	65194521	3	3	240	1	0	0	0	0	1	0	0	0	12144	912	32	2	174	2	PLEKHG3	14	65194521	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	206095	65194521	42155019	2997	21847										
SPTB	0	genome.wustl.edu	37	chr14	65259777	65259777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccatctcggccagccacttCtccttctctcccatccacag	4	20	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	65259777	65259777	C	G	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.2604	p.E868D	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	19	0	0	12	6	33.33	-	-	-	G	65259777	C	G	65259777	3	3	240	1	0	0	0	0	1	0	0	0	15209	912	32	2	4543	2	SPTB	14	65259777	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	65256	65259777	42089763	2998	21848										
RDH11	0	genome.wustl.edu	37	chr14	68159249	68159249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggttccctgtcgtggtctgGatctctttggccaccaattc	10	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	68159249	68159249	G	A	SNP	RDH11	ENST00000557331	human	ensembl	69_37n	-1	known	missense	c.136	p.P46S	1.000	NULL	NULL	-	no_errors	RDH11	HGNC	ENSG00000072042	163	0	0	106	71	40.11	-	-	-	A	68159249	G	A	68159249	3	1	240	1	0	0	0	0	1	0	0	0	13273	1164	41	2	721	2	RDH11	14	68159249	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2899472	68159249	39190291	2999	21849										
ADAM21	0	genome.wustl.edu	37	chr14	70925044	70925044	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaagcatagaacaggtcctGaacgatttctctcaatggaa	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	70925044	70925044	G	C	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	silent	c.828	p.L276	0.195	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	49	0	0	33	15	31.25	-	-	-	C	70925044	G	C	70925044	2	2	240	1	0	0	0	0	0	0	0	1	243	1277	45	2		2	ADAM21	14	70925044	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2765795	70925044	36424496	3000	21850										
PCNX	0	genome.wustl.edu	37	chr14	71444508	71444508	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagagaggtctcagcacctCtgcatctgaagaagccaata	9	12	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	71444508	71444508	C	T	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.1454	p.S485F	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	33	0	0	31	7	18.42	-	-	-	T	71444508	C	T	71444508	3	4	240	1	0	0	0	0	1	0	0	0	11664	913	32	2	1476	2	PCNX	14	71444508	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	519464	71444508	35905032	3001	21851										
PCNX	0	genome.wustl.edu	37	chr14	71514574	71514574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgaagttgctacgatcctCttttagcagccctacatatc	6	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	71514574	71514574	C	G	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.4211	p.S1404C	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	211	0	0	87	90	50.85	-	-	-	G	71514574	C	G	71514574	3	3	240	1	0	0	0	0	1	0	0	0	11664	913	32	2	4297	2	PCNX	14	71514574	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70066	71514574	35834966	3002	21852										
SIPA1L1	0	genome.wustl.edu	37	chr14	72055318	72055318	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtccaactccaaccaagctCagtgactttctcattactgg	7	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	72055318	72055318	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.729	p.L243	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	40	0	0	30	31	50.82	-	-	-	T	72055318	C	T	72055318	2	4	240	1	0	0	0	0	0	0	0	1	14418	813	29	2		2	SIPA1L1	14	72055318	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	540744	72055318	35294222	3003	21853										
ZFYVE1	0	genome.wustl.edu	37	chr14	73464634	73464634	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggccttgagctccttggtGaagtgcttcagataagcttc	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	73464634	73464634	G	A	SNP	ZFYVE1	ENST00000553891	human	ensembl	69_37n	-1	known	silent	c.873	p.F291	0.996	superfamily_Growth_fac_rcpt	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Growth_fac_rcpt,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861	62	0	0	22	29	56.86	-	-	-	A	73464634	G	A	73464634	2	1	240	1	0	0	0	0	0	0	0	1	17759	1281	45	2		2	ZFYVE1	14	73464634	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1409316	73464634	33884906	3004	21854										
RBM25	0	genome.wustl.edu	37	chr14	73578242	73578242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttttactgtaggtgcttCcaatagtcctggtcagccta	9	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	73578242	73578242	C	G	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	missense	c.2024	p.S675C	1.000	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	59	0	0	25	6	19.35	-	-	-	G	73578242	C	G	73578242	3	3	240	1	0	0	0	0	1	0	0	0	13208	855	30	2	2082	2	RBM25	14	73578242	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	113608	73578242	33771298	3005	21855										
NUMB	0	genome.wustl.edu	37	chr14	73743429	73743429	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaggtgcctgtaggaacctCtgtatgcctgtctgctgagg	14	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	73743429	73743429	C	T	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	missense	c.1813	p.E605K	0.047	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	66	0	0	27	36	57.14	-	-	-	T	73743429	C	T	73743429	3	4	240	1	0	0	0	0	1	0	0	0	10824	922	32	2	146	2	NUMB	14	73743429	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165187	73743429	33606111	3006	21856										
ACOT4	0	genome.wustl.edu	37	chr14	74062046	74062046	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaaggcccaggggcccatCctgctcattgttggtcagga	14	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74062046	74062046	C	G	SNP	ACOT4	ENST00000326303	human	ensembl	69_37n	1	known	missense	c.954	p.I318M	1.000	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465	48	0	0	32	11	25	-	-	-	G	74062046	C	G	74062046	3	3	240	1	0	0	0	0	1	0	0	0	153	845	30	2	964	2	ACOT4	14	74062046	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	318617	74062046	33287494	3007	21857										
DNAL1	0	genome.wustl.edu	37	chr14	74138262	74138262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaaaacttgaggatattaTctttaggaagaaacaacata	7	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74138262	74138262	T	G	SNP	DNAL1	ENST00000553645	human	ensembl	69_37n	1	known	missense	c.226	p.S76A	1.000	NULL	NULL	-	no_errors	DNAL1	HGNC	ENSG00000119661	36	0	0	31	9	22.5	-	-	-	G	74138262	T	G	74138262	3	3	240	1	0	0	0	0	1	0	0	0	4692	1435	50	5	244	5	DNAL1	14	74138262	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	76216	74138262	33211278	3008	21858										
ENTPD5	0	genome.wustl.edu	37	chr14	74436730	74436730	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctgtaagactgtgctgtCtgcaaagccaaagccatcct	8	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74436730	74436730	C	G	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.1183	p.D395H	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	86	0	0	40	36	47.37	-	-	-	G	74436730	C	G	74436730	3	3	240	1	0	0	0	0	1	0	0	0	5179	913	32	2	111	2	ENTPD5	14	74436730	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	298468	74436730	32912810	3009	21859										
LIN52	0	genome.wustl.edu	37	chr14	74557976	74557976	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctaagttttgaaaaacttGaccgtgcctcaccagatctt	7	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74557976	74557976	G	C	SNP	LIN52	ENST00000555028	human	ensembl	69_37n	1	known	missense	c.73	p.D25H	1.000	pfam_DREAM_Lin52	pfam_DREAM_Lin52	-	no_errors	LIN52	HGNC	ENSG00000205659	178	0	0	124	32	20.51	-	-	-	C	74557976	G	C	74557976	3	2	240	1	0	0	0	0	1	0	0	0	8864	1290	45	2	79	2	LIN52	14	74557976	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	121246	74557976	32791564	3010	21860										
ABCD4	0	genome.wustl.edu	37	chr14	74764731	74764731	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaggtccttcctccagctCacatacagcaggttgcaggt	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74764731	74764731	C	G	SNP	ABCD4	ENST00000556971	human	ensembl	69_37n	-1	putative	nonstop	c.206	p.*69S	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCD4	HGNC	ENSG00000119688	65	0	0	61	26	29.89	-	-	-	G	74764731	C	G	74764731	4	3	240	1	0	0	0	0	0	0	0	0	63	813	29	2	1557	2	ABCD4	14	74764731	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	206755	74764731	32584809	3011	21861										
LTBP2	0	genome.wustl.edu	37	chr14	74989546	74989546	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccagggctgcagacacatCtgtatccatcggggaggttc	13	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	74989546	74989546	C	G	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.2606	p.R869T	0.982	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	35	0	0	20	28	58.33	-	-	-	G	74989546	C	G	74989546	3	3	240	1	0	0	0	0	1	0	0	0	9140	913	32	2	2943	2	LTBP2	14	74989546	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	224815	74989546	32359994	3012	21862										
LTBP2	0	genome.wustl.edu	37	chr14	75019024	75019024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtggcagaacttcccggtgGagttggcggggcaccagcat	17	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	75019024	75019024	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.1265	p.S422F	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	19	0	0	7	5	41.67	-	-	-	A	75019024	G	A	75019024	3	1	240	1	0	0	0	0	1	0	0	0	9140	1174	41	2	4324	2	LTBP2	14	75019024	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29478	75019024	32330516	3013	21863										
YLPM1	0	genome.wustl.edu	37	chr14	75245273	75245273	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccagagccggtaaaagaaGaagttacagtacctgccacc	9	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	75245273	75245273	G	T	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	nonsense	c.997	p.E333*	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	89	0	0	48	37	43.53	-	-	-	T	75245273	G	T	75245273	4	4	240	1	0	0	0	0	0	1	0	0	17583	943	33	2	1003	2	YLPM1	14	75245273	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	226249	75245273	32104267	3014	21864										
YLPM1	0	genome.wustl.edu	37	chr14	75264722	75264722	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctaagcgactctcaacaaGagccacctaaaagtgaagtc	7	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	75264722	75264722	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.2722	p.E908K	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	46	0	0	31	8	20.51	-	-	-	A	75264722	G	A	75264722	3	1	240	1	0	0	0	0	1	0	0	0	17583	943	33	2	2740	2	YLPM1	14	75264722	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19449	75264722	32084818	3015	21865										
MLH3	0	genome.wustl.edu	37	chr14	75515642	75515642	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtaatgtgcttcagagctGatatagccactaagctcaaa	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	75515642	75515642	G	A	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	silent	c.717	p.I239	1.000	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	45	0	0	33	12	26.67	-	-	-	A	75515642	G	A	75515642	2	1	240	1	0	0	0	0	0	0	0	1	9689	1280	45	2		2	MLH3	14	75515642	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	250920	75515642	31833898	3016	21866										
ACYP1	0	genome.wustl.edu	37	chr14	75530175	75530175	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctgcaggccacatacctGagtatgcttacggaaaaaca	9	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	75530175	75530175	G	C	SNP	ACYP1	ENST00000238618	human	ensembl	69_37n	-1	known	missense	c.82	p.Q28E	1.000	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,pfscan_Acylphosphatase-like	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,prints_Acylphosphatase,pfscan_Acylphosphatase-like	-	no_errors	ACYP1	HGNC	ENSG00000119640	87	0	0	75	21	21.65	-	-	-	C	75530175	G	C	75530175	3	2	240	1	0	0	0	0	1	0	0	0	228	1299	45	2	308	2	ACYP1	14	75530175	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14533	75530175	31819365	3017	21867										
NRXN3	0	genome.wustl.edu	37	chr14	80328293	80328293	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagaaaaacaaggacaggGagtattacgtgtaaacatgc	10	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	80328293	80328293	G	T	SNP	NRXN3	ENST00000335750	human	ensembl	69_37n	1	known	nonsense	c.3172	p.E1058*	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	43	0	0	48	19	28.36	-	-	-	T	80328293	G	T	80328293	4	4	240	1	0	0	0	0	0	1	0	0	10740	1175	41	2	3584	2	NRXN3	14	80328293	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4798118	80328293	27021247	3018	21868										
DIO2	0	genome.wustl.edu	37	chr14	80677714	80677714	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagcagcaccacgtgcttGagcagaatgaccgagtcata	10	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	80677714	80677714	G	A	SNP	DIO2	ENST00000422005	human	ensembl	69_37n	-1	known	silent	c.102	p.L34	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448	38	0	0	24	8	25	-	-	-	A	80677714	G	A	80677714	2	1	240	1	0	0	0	0	0	0	0	1	4561	1277	45	2		2	DIO2	14	80677714	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	349421	80677714	26671826	3019	21869										
SPATA7	0	genome.wustl.edu	37	chr14	88862531	88862531	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctcggttccagtaagcgtGagtaccagcataaagtgtaa	11	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	88862531	88862531	G	T	SNP	SPATA7	ENST00000393545	human	ensembl	69_37n	1	known	silent	c.222	p.V74	0.160	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317	91	0	0	65	8	10.96	-	-	-	T	88862531	G	T	88862531	2	4	240	1	0	0	0	0	0	0	0	1	15105	1277	45	2		2	SPATA7	14	88862531	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8184817	88862531	18487009	3020	21870										
TRIP11	0	genome.wustl.edu	37	chr14	92499586	92499586	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttcctttgtcctagaatCaggtaattctgctacaagag	7	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	92499586	92499586	C	G	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.151	p.D51H	0.962	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	44	0	0	34	26	43.33	-	-	-	G	92499586	C	G	92499586	3	3	240	1	0	0	0	0	1	0	0	0	16651	826	29	2	5868	2	TRIP11	14	92499586	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3637055	92499586	14849954	3021	21871										
SLC24A4	0	genome.wustl.edu	37	chr14	92949139	92949139	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagttcttcatggtcaccttCatcaccgccacgctgtggat	8	13	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	92949139	92949139	C	A	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.1371	p.F457L	0.991	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	61	0	0	52	11	17.46	-	-	-	A	92949139	C	A	92949139	3	1	240	1	0	0	0	0	1	0	0	0	14557	825	29	2	1370	2	SLC24A4	14	92949139	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	449553	92949139	14400401	3022	21872										
GOLGA5	0	genome.wustl.edu	37	chr14	93276687	93276687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcatgaagcggatgccactCtgaagagagagcaggagagc	15	8	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	93276687	93276687	C	G	SNP	GOLGA5	ENST00000163416	human	ensembl	69_37n	1	known	missense	c.1081	p.L361V	0.803	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455	64	0	0	58	19	24.68	-	-	-	G	93276687	C	G	93276687	3	3	240	1	0	0	0	0	1	0	0	0	6608	912	32	2	1095	2	GOLGA5	14	93276687	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	327548	93276687	14072853	3023	21873										
UBR7	0	genome.wustl.edu	37	chr14	93677001	93677001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccttttttcagaaattttCgttgtgattgtggaaacagc	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	93677001	93677001	C	T	SNP	UBR7	ENST00000013070	human	ensembl	69_37n	1	known	missense	c.292	p.R98C	1.000	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	pfam_Znf_N-recognin,superfamily_Znf_FYVE_PHD,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR7	HGNC	ENSG00000012963	71	0	0	39	23	37.1	-	-	-	T	93677001	C	T	93677001	3	4	240	1	0	0	0	0	1	0	0	0	17003	884	31	1	302	1	UBR7	14	93677001	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	400314	93677001	13672539	3024	21874										
ASB2	0	genome.wustl.edu	37	chr14	94423200	94423200	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccgggccggcgaactctCaggaggtgcagtggacctgg	18	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	94423200	94423200	C	G	SNP	ASB2	ENST00000315988	human	ensembl	69_37n	-1	known	missense	c.79	p.E27Q	0.001	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628	73	0	0	32	41	56.16	-	-	-	G	94423200	C	G	94423200	3	3	240	1	0	0	0	0	1	0	0	0	1027	835	29	2	1716	2	ASB2	14	94423200	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	746199	94423200	12926340	3025	21875										
SERPINA10	0	genome.wustl.edu	37	chr14	94756904	94756904	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgtgccaggaggacggaGagcaggagacttggcaccac	15	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	94756904	94756904	G	C	SNP	SERPINA10	ENST00000261994	human	ensembl	69_37n	-1	known	silent	c.27	p.L9	0.013	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093	52	0	0	19	26	57.78	-	-	-	C	94756904	G	C	94756904	2	2	240	1	0	0	0	0	0	0	0	1	14175	929	33	2		2	SERPINA10	14	94756904	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	333704	94756904	12592636	3026	21876										
SERPINA9	0	genome.wustl.edu	37	chr14	94929466	94929466	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttccactttccctagaaaGagaataccgtctgtggcttt	7	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	94929466	94929466	G	C	SNP	SERPINA9	ENST00000337425	human	ensembl	69_37n	-1	known	silent	c.1272	p.L424	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA9	HGNC	ENSG00000170054	68	0	0	64	19	22.89	-	-	-	C	94929466	G	C	94929466	2	2	240	1	0	0	0	0	0	0	0	1	14183	929	33	2		2	SERPINA9	14	94929466	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	172562	94929466	12420074	3027	21877										
BDKRB2	0	genome.wustl.edu	37	chr14	96707349	96707349	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttcaccaacatgctcctGaatgtcgtgggcttcctgct	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	96707349	96707349	G	A	SNP	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	silent	c.684	p.L228	0.982	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	71	0	0	43	40	48.19	-	-	-	A	96707349	G	A	96707349	2	1	240	1	0	0	0	0	0	0	0	1	1397	1277	45	2		2	BDKRB2	14	96707349	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1777883	96707349	10642191	3028	21878										
BDKRB2	0	genome.wustl.edu	37	chr14	96707646	96707646	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctacagcaacagctgcctCaacccactggtgtacgtgat	9	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	96707646	96707646	C	T	SNP	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	silent	c.981	p.L327	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	51	0	0	55	16	22.54	-	-	-	T	96707646	C	T	96707646	2	4	240	1	0	0	0	0	0	0	0	1	1397	813	29	2		2	BDKRB2	14	96707646	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	297	96707646	10641894	3029	21879										
AK7	0	genome.wustl.edu	37	chr14	96939029	96939029	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttgttttcttagaggaaGatgaggaggaggaagatgat	14	1	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	96939029	96939029	G	C	SNP	AK7	ENST00000267584	human	ensembl	69_37n	1	known	missense	c.1492	p.D498H	1.000	pfam_Adenylate_kin	pfam_Dpy-30_motif,pfam_Adenylate_kin	-	no_errors	AK7	HGNC	ENSG00000140057	116	0	0	95	25	20.83	-	-	-	C	96939029	G	C	96939029	3	2	240	1	0	0	0	0	1	0	0	0	444	942	33	2	1546	2	AK7	14	96939029	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	231383	96939029	10410511	3030	21880										
SETD3	0	genome.wustl.edu	37	chr14	99865091	99865091	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcttttactttcttgattGagactttcattttcggacct	6	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	99865091	99865091	G	C	SNP	SETD3	ENST00000331768	human	ensembl	69_37n	-1	known	silent	c.1710	p.L570	0.000	NULL	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576	183	0	0	76	79	50.97	-	-	-	C	99865091	G	C	99865091	2	2	240	1	0	0	0	0	0	0	0	1	14220	1277	45	2		2	SETD3	14	99865091	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2926062	99865091	7484449	3031	21881										
CCNK	0	genome.wustl.edu	37	chr14	99959023	99959023	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacttcaataaatgaaggaGaataaagaaaattcaagccc	6	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	99959023	99959023	G	A	SNP	CCNK	ENST00000389879	human	ensembl	69_37n	1	known	silent	c.9	p.E3	0.999	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNK	HGNC	ENSG00000090061	44	0	0	36	16	30.77	-	-	-	A	99959023	G	A	99959023	2	1	240	1	0	0	0	0	0	0	0	1	2959	933	33	2		2	CCNK	14	99959023	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	93932	99959023	7390517	3032	21882										
HHIPL1	0	genome.wustl.edu	37	chr14	100118806	100118806	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctggtcaacaagaacctCaactcaaacctgggccacgt	8	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	100118806	100118806	C	T	SNP	HHIPL1	ENST00000330710	human	ensembl	69_37n	1	known	silent	c.501	p.L167	0.969	pfam_Folate_rcpt-like	pfam_Srcr_rcpt,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	HHIPL1	HGNC	ENSG00000182218	43	0	0	33	6	15.38	-	-	-	T	100118806	C	T	100118806	2	4	240	1	0	0	0	0	0	0	0	1	7144	813	29	2		2	HHIPL1	14	100118806	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	159783	100118806	7230734	3033	21883										
DYNC1H1	0	genome.wustl.edu	37	chr14	102493882	102493883	+	Splice_Site	INS	-	-	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttctggccaatggagaggINStaattaggtgacgtgttgcg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	102493882	102493883	-	T	INS	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	splice_site_ins	c.9048+1_9048+1	e46+1	1.000:1.000	-	-	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	68	0	0	39	23	37.1	-	-	-	T	102493883	-	T	102493882	8	5	240	1	0	1	1	0	0	0	1	0	4876	1275	44	0	9231	0	DYNC1H1	14	102493882	Splice_Site	INS	-	TCGA-AC-A23H-01A-11D-A159-09	2375076	102493882	4855658	3034	21884										
TNFAIP2	0	genome.wustl.edu	37	chr14	103599098	103599098	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtctcagccactgttcaaGaggttcacgcacacccgctg	9	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	103599098	103599098	G	A	SNP	TNFAIP2	ENST00000559255	human	ensembl	69_37n	1	putative	missense	c.14	p.R5K	1.000	pfam_Sec6	pfam_Sec6	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNFAIP2	HGNC	ENSG00000185215	59	0	0	42	14	25	-	-	-	A	103599098	G	A	103599098	3	1	240	1	0	0	0	0	1	0	0	0	16368	933	33	2	1464	2	TNFAIP2	14	103599098	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1105216	103599098	3750442	3035	21885										
MARK3	0	genome.wustl.edu	37	chr14	103932331	103932331	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgagagagagagtattaaGagggaaatacagaattccct	11	5	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	103932331	103932331	G	A	SNP	MARK3	ENST00000429436	human	ensembl	69_37n	1	known	missense	c.800	p.R267K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK3	HGNC	ENSG00000075413	67	0	0	36	24	40	-	-	-	A	103932331	G	A	103932331	3	1	240	1	0	0	0	0	1	0	0	0	9385	942	33	2	834	2	MARK3	14	103932331	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	333233	103932331	3417209	3036	21886										
BAG5	0	genome.wustl.edu	37	chr14	104027276	104027276	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactctttgagaagacgttCtgtctcctgtgctgcccgct	9	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	104027276	104027276	C	G	SNP	BAG5	ENST00000337322	human	ensembl	69_37n	-1	known	missense	c.349	p.E117Q	0.994	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG5	HGNC	ENSG00000166170	115	0	0	47	58	55.24	-	-	-	G	104027276	C	G	104027276	3	3	240	1	0	0	0	0	1	0	0	0	1294	922	32	2	1121	2	BAG5	14	104027276	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94945	104027276	3322264	3037	21887										
ADSSL1	0	genome.wustl.edu	37	chr14	105196465	105196465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagaggagagggcttggaGgagccacgggtcaaatgcag	20	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105196465	105196465	G	A	SNP	ADSSL1	ENST00000332972	human	ensembl	69_37n	1	known	missense	c.236	p.R79K	0.004	NULL	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100	12	0	0	12	5	29.41	-	-	-	A	105196465	G	A	105196465	3	1	240	1	0	0	0	0	1	0	0	0	348	1000	35	4	434	4	ADSSL1	14	105196465	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1169189	105196465	2153075	3038	21888										
AHNAK2	0	genome.wustl.edu	37	chr14	105410730	105410730	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagaagggggctgaatgctGaggtcagtggtcttcaggtc	17	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105410730	105410730	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.11058	p.L3686	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	93	0	0	70	20	22.22	-	-	-	A	105410730	G	A	105410730	2	1	240	1	0	0	0	0	0	0	0	1	415	1277	45	2		2	AHNAK2	14	105410730	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	214265	105410730	1938810	3039	21889										
AHNAK2	0	genome.wustl.edu	37	chr14	105412781	105412781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaccttcggcgcagacaCatccaccgagacctcaatgg	8	17	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105412781	105412781	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.9007	p.V3003M	0.005	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	142	0	0	80	57	41.3	-	-	-	T	105412781	C	T	105412781	3	4	240	1	0	0	0	0	1	0	0	0	415	478	17	4	8384	4	AHNAK2	14	105412781	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2051	105412781	1936759	3040	21890										
BRF1	0	genome.wustl.edu	37	chr14	105722752	105722752	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagcacagaccggccactGagatgcgtggaggcacctgg	16	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105722752	105722752	G	A	SNP	BRF1	ENST00000548421	human	ensembl	69_37n	-1	putative	nonsense	c.574	p.Q192*	0.000	NULL	pfam_TFIIB_cyclin,pfam_Znf_TFIIB,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024	32	0	0	28	14	33.33	-	-	-	A	105722752	G	A	105722752	4	1	240	1	0	0	0	0	0	1	0	0	1518	1305	45	2		2	BRF1	14	105722752	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	309971	105722752	1626788	3041	21891										
PACS2	0	genome.wustl.edu	37	chr14	105858085	105858085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctccccgtcggtgagcgGaggcctgtcctcccccaggt	12	18	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105858085	105858085	G	A	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	missense	c.2237	p.G746E	0.973	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	17	0	0	8	5	38.46	-	-	-	A	105858085	G	A	105858085	3	1	240	1	0	0	0	0	1	0	0	0	11446	1174	41	2	2286	2	PACS2	14	105858085	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	135333	105858085	1491455	3042	21892										
PACS2	0	genome.wustl.edu	37	chr14	105860932	105860932	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagcgacgtcaagttcttcCagctggccgcgcagtggtcc	13	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105860932	105860932	C	T	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	nonsense	c.2638	p.Q880*	1.000	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	36	0	0	28	11	28.21	-	-	-	T	105860932	C	T	105860932	4	4	240	1	0	0	0	0	0	1	0	0	11446	595	21	4	2699	4	PACS2	14	105860932	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2847	105860932	1488608	3043	21893										
C14orf80	0	genome.wustl.edu	37	chr14	105958999	105958999	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccgccatgtgcagtggctGatgggaaagctgcggttccg	16	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	14	105958999	105958999	G	A	SNP	C14orf80	ENST00000392523	human	ensembl	69_37n	1	known	silent	c.513	p.L171	1.000	NULL	NULL	-	no_errors	C14orf80	HGNC	ENSG00000185347	28	0	0	25	18	41.86	-	-	-	A	105958999	G	A	105958999	2	1	240	1	0	0	0	0	0	0	0	1	1793	1277	45	2		2	C14orf80	14	105958999	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98067	105958999	1390541	3044	21894										
OR4M2	0	genome.wustl.edu	37	chr15	22368953	22368953	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgacctctacactgctatCtgccgacccctccactatgc	5	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	22368953	22368953	C	T	SNP	OR4M2	ENST00000332663	human	ensembl	69_37n	1	known	silent	c.378	p.I126	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974	506	0	0	429	91	17.5	-	-	-	T	22368953	C	T	22368953	2	4	240	1	0	0	0	0	0	0	0	1	11149	903	32	2		2	OR4M2	15	22368953	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		22368953	80162439	3045	21895										
TUBGCP5	0	genome.wustl.edu	37	chr15	22861855	22861855	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggcaaccaaggagaacctGatgaagatgcagtccattgc	11	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	22861855	22861855	G	C	SNP	TUBGCP5	ENST00000283645	human	ensembl	69_37n	1	known	silent	c.1875	p.L625	0.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP5	HGNC	ENSG00000153575	51	0	0	42	5	10.64	-	-	-	C	22861855	G	C	22861855	2	2	240	1	0	0	0	0	0	0	0	1	16866	1277	45	2		2	TUBGCP5	15	22861855	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	492902	22861855	79669537	3046	21896										
CYFIP1	0	genome.wustl.edu	37	chr15	22956470	22956470	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaccatgctagagtccctCattgcagacaaaagtggttc	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	22956470	22956470	C	T	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	silent	c.1707	p.L569	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	68	0	0	41	12	22.64	-	-	-	T	22956470	C	T	22956470	2	4	240	1	0	0	0	0	0	0	0	1	4168	813	29	2		2	CYFIP1	15	22956470	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94615	22956470	79574922	3047	21897										
NIPA1	0	genome.wustl.edu	37	chr15	23049288	23049288	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgggccggcgcgatccaGaagatgagcagcagcagcat	14	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	23049288	23049288	G	A	SNP	NIPA1	ENST00000337435	human	ensembl	69_37n	-1	known	silent	c.531	p.F177	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113	44	0	0	34	13	27.66	-	-	-	A	23049288	G	A	23049288	2	1	240	1	0	0	0	0	0	0	0	1	10494	933	33	2		2	NIPA1	15	23049288	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	92818	23049288	79482104	3048	21898										
MAGEL2	0	genome.wustl.edu	37	chr15	23890429	23890429	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaggcaaagggatcctgcaGagcatatggcagtgactttg	13	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	23890429	23890429	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	silent	c.652	p.L218	0.084	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	37	0	0	32	13	28.89	-	-	-	A	23890429	G	A	23890429	2	1	240	1	0	0	0	0	0	0	0	1	9260	933	33	2		2	MAGEL2	15	23890429	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	841141	23890429	78640963	3049	21899										
NDN	0	genome.wustl.edu	37	chr15	23932068	23932068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgagctcgtgcgccttctgCaccagctgcgccggggctgg	15	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	23932068	23932068	C	T	SNP	NDN	ENST00000331837	human	ensembl	69_37n	-1	known	silent	c.297	p.V99	1.000	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	13	0	0	8	4	33.33	-	-	-	T	23932068	C	T	23932068	2	4	240	1	0	0	0	0	0	0	0	1	10319	697	25	4		4	NDN	15	23932068	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41639	23932068	78599324	3050	21900										
ATP10A	0	genome.wustl.edu	37	chr15	25940219	25940219	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctcactttgcccttggtCttctcaggggctctctggag	11	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	25940219	25940219	C	G	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.2835	p.K945N	0.173	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	80	0	0	44	18	29.03	-	-	-	G	25940219	C	G	25940219	3	3	240	1	0	0	0	0	1	0	0	0	1120	912	32	2	1696	2	ATP10A	15	25940219	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2008151	25940219	76591173	3051	21901										
OCA2	0	genome.wustl.edu	37	chr15	28171386	28171386	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagcaaccagatggcacccaGaatagcaatccatcctgaaa	7	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	28171386	28171386	G	A	SNP	OCA2	ENST00000354638	human	ensembl	69_37n	-1	known	silent	c.1966	p.L656	1.000	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044	67	0	0	43	9	17.31	-	-	-	A	28171386	G	A	28171386	2	1	240	1	0	0	0	0	0	0	0	1	10888	933	33	2		2	OCA2	15	28171386	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2231167	28171386	74360006	3052	21902										
HERC2	0	genome.wustl.edu	37	chr15	28431765	28431765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcctcctcttcattatccGaagctaagaaaggaactgca	6	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	28431765	28431765	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.8783	p.S2928L	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	73	0	0	54	9	14.29	-	-	-	A	28431765	G	A	28431765	3	1	240	1	0	0	0	0	1	0	0	0	7109	1059	37	1	5873	1	HERC2	15	28431765	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	260379	28431765	74099627	3053	21903										
RYR3	0	genome.wustl.edu	37	chr15	33922234	33922234	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataacctgcaaatgtcaactGaaaccttaaagtgagtattt	6	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	33922234	33922234	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.2773	p.E925K	1.000	pfam_Ryanodine_rcpt	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	93	0	0	46	43	48.31	-	-	-	A	33922234	G	A	33922234	3	1	240	1	0	0	0	0	1	0	0	0	13856	1291	45	2	2859	2	RYR3	15	33922234	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5490469	33922234	68609158	3054	21904										
RYR3	0	genome.wustl.edu	37	chr15	33954549	33954549	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcctccttcgatctggtttCtatgacctgctcatcagcat	8	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	33954549	33954549	C	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.4818	p.F1606L	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	91	0	0	67	28	29.47	-	-	-	G	33954549	C	G	33954549	3	3	240	1	0	0	0	0	1	0	0	0	13856	912	32	2	4956	2	RYR3	15	33954549	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32315	33954549	68576843	3055	21905										
RYR3	0	genome.wustl.edu	37	chr15	34134146	34134146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagaagtgacaaaaaagaaGaagcggcggtgtggtcagaa	14	5	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	34134146	34134146	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.13119	p.K4373N	1.000	pfam_Ryanrecept_TM4-6,superfamily_4_helix_cytokine-like_core	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	140	0	0	78	17	17.89	-	-	-	C	34134146	G	C	34134146	3	2	240	1	0	0	0	0	1	0	0	0	13856	933	33	2	13481	2	RYR3	15	34134146	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	179597	34134146	68397246	3056	21906										
SLC12A6	0	genome.wustl.edu	37	chr15	34528968	34528968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcatctgggacctttgttCcatcatcaaagtgcgctcgt	10	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	34528968	34528968	C	T	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.2956	p.E986K	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	196	0	0	153	27	15	-	-	-	T	34528968	C	T	34528968	3	4	240	1	0	0	0	0	1	0	0	0	14476	864	30	2	485	2	SLC12A6	15	34528968	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	394822	34528968	68002424	3057	21907										
ZNF770	0	genome.wustl.edu	37	chr15	35274401	35274401	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattttttcccatattttgcCaagaaaatggcaaagtcaat	5	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	35274401	35274401	C	T	SNP	ZNF770	ENST00000356321	human	ensembl	69_37n	-1	known	nonsense	c.1235	p.W412*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146	55	0	0	40	11	21.57	-	-	-	T	35274401	C	T	35274401	4	4	240	1	0	0	0	0	0	1	0	0	18237	595	21	4	844	4	ZNF770	15	35274401	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	745433	35274401	67256991	3058	21908										
MEIS2	0	genome.wustl.edu	37	chr15	37376049	37376049	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtgcctgctgagtgggttGaggttgcatcatcgtggtct	17	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	37376049	37376049	G	C	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	nonsense	c.677	p.S226*	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	96	0	0	86	22	20.37	-	-	-	C	37376049	G	C	37376049	4	2	240	1	0	0	0	0	0	1	0	0	9539	1294	45	2	843	2	MEIS2	15	37376049	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2101648	37376049	65155343	3059	21909										
RASGRP1	0	genome.wustl.edu	37	chr15	38811530	38811530	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttacaaaataacagatcttCaggcaaagtcctggtgaatt	7	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	38811530	38811530	C	T	SNP	RASGRP1	ENST00000310803	human	ensembl	69_37n	-1	known	silent	c.369	p.L123	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP1	HGNC	ENSG00000172575	60	0	0	47	10	17.54	-	-	-	T	38811530	C	T	38811530	2	4	240	1	0	0	0	0	0	0	0	1	13157	813	29	2		2	RASGRP1	15	38811530	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1435481	38811530	63719862	3060	21910										
C15orf54	0	genome.wustl.edu	37	chr15	39544726	39544726	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcagtctcctgggtggaaGaacatgagttcaacaaagcg	11	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	39544726	39544726	G	A	SNP	C15orf54	ENST00000318578	human	ensembl	69_37n	1	known	silent	c.390	p.K130	0.007	NULL	NULL	-	no_errors	C15orf54	HGNC	ENSG00000175746	51	0	0	35	23	39.66	-	-	-	A	39544726	G	A	39544726	2	1	240	1	0	0	0	0	0	0	0	1	1814	933	33	2		2	C15orf54	15	39544726	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	733196	39544726	62986666	3061	21911										
EIF2AK4	0	genome.wustl.edu	37	chr15	40301923	40301923	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtctacattattctgtatGatgctgtggtaagcatttaa	8	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	40301923	40301923	G	A	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.3685	p.D1229N	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	64	0	0	37	12	24.49	-	-	-	A	40301923	G	A	40301923	3	1	240	1	0	0	0	0	1	0	0	0	5034	1290	45	2	3787	2	EIF2AK4	15	40301923	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	757197	40301923	62229469	3062	21912										
EIF2AK4	0	genome.wustl.edu	37	chr15	40308739	40308739	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtttattgaacagaagggaGatttgcaagatcttatgcca	10	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	40308739	40308739	G	A	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.3796	p.D1266N	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	70	0	0	42	13	23.64	-	-	-	A	40308739	G	A	40308739	3	1	240	1	0	0	0	0	1	0	0	0	5034	942	33	2	3906	2	EIF2AK4	15	40308739	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6816	40308739	62222653	3063	21913										
PAK6	0	genome.wustl.edu	37	chr15	40564736	40564736	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgtgacacatgagcagttCaaggctgcgctcaggatggt	14	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	40564736	40564736	C	T	SNP	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	silent	c.1170	p.F390	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	25	0	0	22	7	24.14	-	-	-	T	40564736	C	T	40564736	2	4	240	1	0	0	0	0	0	0	0	1	11477	825	29	2		2	PAK6	15	40564736	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	255997	40564736	61966656	3064	21914										
BAHD1	0	genome.wustl.edu	37	chr15	40758220	40758220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccccctctgcagactattCcaccccaccccaccgcacag	4	23	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	40758220	40758220	C	T	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	missense	c.2234	p.S745F	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	99	0	0	94	30	24.19	-	-	-	T	40758220	C	T	40758220	3	4	240	1	0	0	0	0	1	0	0	0	1301	855	30	2	2256	2	BAHD1	15	40758220	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	193484	40758220	61773172	3065	21915										
CASC5	0	genome.wustl.edu	37	chr15	40914878	40914878	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacagatagctgtaaaagttGaaaaatgtggtaaaagtccc	10	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	40914878	40914878	G	C	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.2494	p.E832Q	0.063	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	64	0	0	33	6	15.38	-	-	-	C	40914878	G	C	40914878	3	2	240	1	0	0	0	0	1	0	0	0	2688	1291	45	2	2532	2	CASC5	15	40914878	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	156658	40914878	61616514	3066	21916										
EXD1	0	genome.wustl.edu	37	chr15	41483693	41483693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagatatttaggggctacttGaaggtgtttgattaaactct	11	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	41483693	41483693	G	C	SNP	EXD1	ENST00000314992	human	ensembl	69_37n	-1	known	missense	c.637	p.Q213E	0.999	superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997	91	0	0	80	16	16.67	-	-	-	C	41483693	G	C	41483693	3	2	240	1	0	0	0	0	1	0	0	0	5333	1299	45	2	919	2	EXD1	15	41483693	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	568815	41483693	61047699	3067	21917										
NDUFAF1	0	genome.wustl.edu	37	chr15	41688938	41688938	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagagggtggccttccggtCctctccaatgatccacaatt	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	41688938	41688938	C	G	SNP	NDUFAF1	ENST00000260361	human	ensembl	69_37n	-1	known	missense	c.320	p.G107A	0.995	NULL	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	82	0	0	70	13	15.66	-	-	-	G	41688938	C	G	41688938	3	3	240	1	0	0	0	0	1	0	0	0	10346	855	30	2	679	2	NDUFAF1	15	41688938	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	205245	41688938	60842454	3068	21918										
RTF1	0	genome.wustl.edu	37	chr15	41749930	41749930	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcagattcagactcttcctCagaagatgaagagttccatg	8	9	4	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	41749930	41749930	C	T	SNP	RTF1	ENST00000389629	human	ensembl	69_37n	1	known	missense	c.518	p.S173L	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	130	0	0	123	32	20.65	-	-	-	T	41749930	C	T	41749930	3	4	240	1	0	0	0	0	1	0	0	0	13807	838	29	2	532	2	RTF1	15	41749930	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60992	41749930	60781462	3069	21919										
LTK	0	genome.wustl.edu	37	chr15	41796311	41796311	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccccagcttttcaacttCtctggactcagttcctgggg	8	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	41796311	41796311	C	G	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.2478	p.E826D	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	33	0	0	38	15	28.3	-	-	-	G	41796311	C	G	41796311	3	3	240	1	0	0	0	0	1	0	0	0	9146	912	32	2	120	2	LTK	15	41796311	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46381	41796311	60735081	3070	21920										
MGA	0	genome.wustl.edu	37	chr15	42041379	42041379	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgccatcttccacttcgtcCtctgctttctctgtcatgaa	5	16	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42041379	42041379	C	G	SNP	MGA	ENST00000564190	human	ensembl	69_37n	1	novel	missense	c.1516	p.L506V	0.047	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGA	HGNC	ENSG00000174197	77	0	0	55	51	48.11	-	-	-	G	42041379	C	G	42041379	3	3	240	1	0	0	0	0	1	0	0	0	9611	668	24	4	5636	4	MGA	15	42041379	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	245068	42041379	60490013	3071	21921										
MGA	0	genome.wustl.edu	37	chr15	42041582	42041582	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccaaaataacttatagctCaggaggacagcctgttggta	9	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42041582	42041582	C	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	nonsense	c.5777	p.S1926*	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	52	0	0	29	30	50.85	-	-	-	A	42041582	C	A	42041582	4	1	240	1	0	0	0	0	0	1	0	0	9611	838	29	2	5839	2	MGA	15	42041582	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	203	42041582	60489810	3072	21922										
MGA	0	genome.wustl.edu	37	chr15	42052713	42052713	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttccaaggtttccaaaagtCtcattcttactcgagtaagt	6	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42052713	42052713	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.7384	p.L2462V	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	80	0	0	43	18	29.51	-	-	-	G	42052713	C	G	42052713	3	3	240	1	0	0	0	0	1	0	0	0	9611	913	32	2	7458	2	MGA	15	42052713	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11131	42052713	60478679	3073	21923										
MAPKBP1	0	genome.wustl.edu	37	chr15	42115323	42115323	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgttgccacgatgccgtctCaaccctgacagcagctgggc	11	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42115323	42115323	C	G	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	silent	c.3519	p.L1173	0.292	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	13	0	0	20	6	23.08	-	-	-	G	42115323	C	G	42115323	2	3	240	1	0	0	0	0	0	0	0	1	9363	813	29	2		2	MAPKBP1	15	42115323	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62610	42115323	60416069	3074	21924										
MAPKBP1	0	genome.wustl.edu	37	chr15	42115998	42115998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaaggccgggcccctggcGaggcagaaaagcctggcttc	14	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42115998	42115998	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	missense	c.3970	p.E1324K	0.023	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	53	0	0	33	14	29.79	-	-	-	A	42115998	G	A	42115998	3	1	240	1	0	0	0	0	1	0	0	0	9363	1059	37	1	4084	1	MAPKBP1	15	42115998	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	675	42115998	60415394	3075	21925										
SPTBN5	0	genome.wustl.edu	37	chr15	42180140	42180140	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacacctgtgggcatggatGagggcattgaagcccagccc	13	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42180140	42180140	G	C	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	silent	c.645	p.L215	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	34	0	0	25	23	47.92	-	-	-	C	42180140	G	C	42180140	2	2	240	1	0	0	0	0	0	0	0	1	15213	1277	45	2		2	SPTBN5	15	42180140	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64142	42180140	60351252	3076	21926										
EHD4	0	genome.wustl.edu	37	chr15	42193119	42193119	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtagaagagctcgtcgtaGacgggcttgtctttggccac	14	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42193119	42193119	G	C	SNP	EHD4	ENST00000220325	human	ensembl	69_37n	-1	known	silent	c.1350	p.V450	0.964	smart_EPS15_homology,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	34	0	0	36	10	21.74	-	-	-	C	42193119	G	C	42193119	2	2	240	1	0	0	0	0	0	0	0	1	5015	929	33	2		2	EHD4	15	42193119	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12979	42193119	60338273	3077	21927										
EHD4	0	genome.wustl.edu	37	chr15	42202044	42202044	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctccttcttcaggtagctGatgatgtaggcatgcacctg	10	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42202044	42202044	G	A	SNP	EHD4	ENST00000220325	human	ensembl	69_37n	-1	known	silent	c.942	p.I314	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	147	0	0	128	45	26.01	-	-	-	A	42202044	G	A	42202044	2	1	240	1	0	0	0	0	0	0	0	1	5015	1280	45	2		2	EHD4	15	42202044	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8925	42202044	60329348	3078	21928										
PLA2G4E	0	genome.wustl.edu	37	chr15	42293365	42293365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagctcacttttctccctCttcctccgcctcctggattg	5	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42293365	42293365	C	G	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	missense	c.576	p.K192N	0.249	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	77	0	0	60	24	28.57	-	-	-	G	42293365	C	G	42293365	3	3	240	1	0	0	0	0	1	0	0	0	12079	912	32	2	1999	2	PLA2G4E	15	42293365	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	91321	42293365	60238027	3079	21929										
PLA2G4D	0	genome.wustl.edu	37	chr15	42373776	42373776	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcctgctcctctgcacaGagattgaagcccaggtgcac	11	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42373776	42373776	G	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	silent	c.858	p.L286	0.001	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	37	0	0	25	11	30.56	-	-	-	T	42373776	G	T	42373776	2	4	240	1	0	0	0	0	0	0	0	1	12078	929	33	2		2	PLA2G4D	15	42373776	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	80411	42373776	60157616	3080	21930										
VPS39	0	genome.wustl.edu	37	chr15	42476796	42476796	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgagtaccacggtgagatCatcctggcccacagccactt	9	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42476796	42476796	C	T	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	missense	c.670	p.D224N	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	103	0	0	81	26	24.3	-	-	-	T	42476796	C	T	42476796	3	4	240	1	0	0	0	0	1	0	0	0	17306	826	29	2	2062	2	VPS39	15	42476796	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	103020	42476796	60054596	3081	21931										
CAPN3	0	genome.wustl.edu	37	chr15	42693954	42693954	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatgcagaagaaccggcgGaaggaccggaagctaggggc	17	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42693954	42693954	G	A	SNP	CAPN3	ENST00000397163	human	ensembl	69_37n	1	known	silent	c.1470	p.R490	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN3	HGNC	ENSG00000092529	44	0	0	37	18	32.73	-	-	-	A	42693954	G	A	42693954	2	1	240	1	0	0	0	0	0	0	0	1	2653	1161	41	2		2	CAPN3	15	42693954	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	217158	42693954	59837438	3082	21932										
ZFP106	0	genome.wustl.edu	37	chr15	42730858	42730858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagatcacagtctgagtttCtgccacactacaaaataata	7	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42730858	42730858	C	G	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.4483	p.E1495Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	126	0	0	83	30	26.55	-	-	-	G	42730858	C	G	42730858	3	3	240	1	0	0	0	0	1	0	0	0	17733	922	32	2	1212	2	ZFP106	15	42730858	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36904	42730858	59800534	3083	21933										
ZFP106	0	genome.wustl.edu	37	chr15	42744120	42744120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgtctgtcatcagagtttAtttcttggttgctattggaa	10	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	42744120	42744120	A	G	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.281	p.I94T	0.898	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	139	0	0	104	37	26.24	-	-	-	G	42744120	A	G	42744120	3	3	240	1	0	0	0	0	1	0	0	0	17733	449	16	5	5442	5	ZFP106	15	42744120	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	13262	42744120	59787272	3084	21934										
CDAN1	0	genome.wustl.edu	37	chr15	43022933	43022933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgcagccctcgctgcagCagagtccgcacatccaggac	11	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43022933	43022933	C	T	SNP	CDAN1	ENST00000356231	human	ensembl	69_37n	-1	known	silent	c.2037	p.L679	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	9	0	0	9	5	35.71	-	-	-	T	43022933	C	T	43022933	2	4	240	1	0	0	0	0	0	0	0	1	3083	697	25	4		4	CDAN1	15	43022933	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	278813	43022933	59508459	3085	21935										
TGM7	0	genome.wustl.edu	37	chr15	43577046	43577046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctgagttgacagcatctCggcatttcggtcatagtacg	10	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43577046	43577046	C	T	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	missense	c.970	p.E324K	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	131	1	0.76	143	35	19.66	-	-	-	T	43577046	C	T	43577046	3	4	240	1	0	0	0	0	1	0	0	0	15930	893	31	1	1190	1	TGM7	15	43577046	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	554113	43577046	58954346	3086	21936										
TUBGCP4	0	genome.wustl.edu	37	chr15	43668352	43668352	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagtgtcctgaatcgactCtgccggctcggcacagacta	10	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43668352	43668352	C	G	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	silent	c.135	p.L45	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	75	0	0	70	24	25.53	-	-	-	G	43668352	C	G	43668352	2	3	240	1	0	0	0	0	0	0	0	1	16865	900	32	2		2	TUBGCP4	15	43668352	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	91306	43668352	58863040	3087	21937										
TP53BP1	0	genome.wustl.edu	37	chr15	43707872	43707872	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgataagttttcttttgcctGagagaactcccatggaggca	10	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43707872	43707872	G	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.5009	p.S1670L	0.974	smart_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	80	0	0	63	20	24.1	-	-	-	A	43707872	G	A	43707872	3	1	240	1	0	0	0	0	1	0	0	0	16479	1294	45	2	948	2	TP53BP1	15	43707872	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39520	43707872	58823520	3088	21938										
TP53BP1	0	genome.wustl.edu	37	chr15	43708564	43708564	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttctttggccttctttttCaatgctgtagtacagttccc	6	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43708564	43708564	C	G	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.4732	p.E1578Q	1.000	pfam_53-BP1_Tudor	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	117	0	0	87	20	18.69	-	-	-	G	43708564	C	G	43708564	3	3	240	1	0	0	0	0	1	0	0	0	16479	835	29	2	1229	2	TP53BP1	15	43708564	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	692	43708564	58822828	3089	21939										
TP53BP1	0	genome.wustl.edu	37	chr15	43748606	43748606	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcaagtattgccaacttttGaggggaatcaatactaatca	8	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43748606	43748606	G	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.2200	p.Q734E	0.003	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	44	0	0	22	11	33.33	-	-	-	C	43748606	G	C	43748606	3	2	240	1	0	0	0	0	1	0	0	0	16479	1299	45	2	3801	2	TP53BP1	15	43748606	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40042	43748606	58782786	3090	21940										
MAP1A	0	genome.wustl.edu	37	chr15	43821934	43821934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcagtggcaagactgctGaccttgacttcttccgtcga	10	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43821934	43821934	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.8122	p.D2708N	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	52	0	0	42	12	22.22	-	-	-	A	43821934	G	A	43821934	3	1	240	1	0	0	0	0	1	0	0	0	9298	1290	45	2	8128	2	MAP1A	15	43821934	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	73328	43821934	58709458	3091	21941										
STRC	0	genome.wustl.edu	37	chr15	43892868	43892868	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatgcagggtgccgaggaaGagagctgcttggctgtagaa	17	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	43892868	43892868	G	C	SNP	STRC	ENST00000450892	human	ensembl	69_37n	-1	known	silent	c.4857	p.L1619	0.988	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866	35	0	0	25	5	16.67	-	-	-	C	43892868	G	C	43892868	2	2	240	1	0	0	0	0	0	0	0	1	15419	929	33	2		2	STRC	15	43892868	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	70934	43892868	58638524	3092	21942										
ELL3	0	genome.wustl.edu	37	chr15	44068711	44068711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgagctcgcacttacccctCggtggccttggaaagcaatc	10	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	44068711	44068711	C	G	SNP	ELL3	ENST00000319359	human	ensembl	69_37n	-1	known	missense	c.164	p.R55P	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886	69	0	0	81	17	17.35	-	-	-	G	44068711	C	G	44068711	3	3	240	1	0	0	0	0	1	0	0	0	5101	884	31	3	1069	3	ELL3	15	44068711	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175843	44068711	58462681	3093	21943										
MFAP1	0	genome.wustl.edu	37	chr15	44107172	44107172	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatttcctcctcctcttcttCactgctgtcttctcgttcca	3	16	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	44107172	44107172	C	T	SNP	MFAP1	ENST00000267812	human	ensembl	69_37n	-1	known	missense	c.400	p.E134K	1.000	NULL	pfam_MFAP1_C	-	no_errors	MFAP1	HGNC	ENSG00000140259	310	0	0	225	68	23.21	-	-	-	T	44107172	C	T	44107172	3	4	240	1	0	0	0	0	1	0	0	0	9584	835	29	2	947	2	MFAP1	15	44107172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38461	44107172	58424220	3094	21944										
WDR76	0	genome.wustl.edu	37	chr15	44158455	44158455	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttccatgagacaggaaaGagggtgcattcgtttggtgg	14	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	44158455	44158455	G	C	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	missense	c.1746	p.K582N	0.005	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	127	0	0	104	28	21.21	-	-	-	C	44158455	G	C	44158455	3	2	240	1	0	0	0	0	1	0	0	0	17423	933	33	2	1796	2	WDR76	15	44158455	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51283	44158455	58372937	3095	21945										
DUOX1	0	genome.wustl.edu	37	chr15	45444575	45444575	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagcagccagcatctctttCatgttctcctacatcttgct	5	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	45444575	45444575	C	G	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3285	p.F1095L	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	115	0	0	98	18	15.52	-	-	-	G	45444575	C	G	45444575	3	3	240	1	0	0	0	0	1	0	0	0	4835	825	29	2	3379	2	DUOX1	15	45444575	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1286120	45444575	57086817	3096	21946										
SPATA5L1	0	genome.wustl.edu	37	chr15	45695561	45695561	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggacgccttgtgtccccagCggggcagtcgagcacccgag	15	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	45695561	45695561	C	A	SNP	SPATA5L1	ENST00000305560	human	ensembl	69_37n	1	known	silent	c.934	p.R312	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763	11	0	0	5	7	58.33	-	-	-	A	45695561	C	A	45695561	2	1	240	1	0	0	0	0	0	0	0	1	15103	759	27	3		3	SPATA5L1	15	45695561	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	250986	45695561	56835831	3097	21947										
SLC24A5	0	genome.wustl.edu	37	chr15	48434501	48434501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacattatcagttctatatGaacttggaattattggaaat	6	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	48434501	48434501	G	A	SNP	SLC24A5	ENST00000341459	human	ensembl	69_37n	1	known	missense	c.1456	p.E486K	1.000	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A5	HGNC	ENSG00000188467	69	0	0	46	16	25.81	-	-	-	A	48434501	G	A	48434501	3	1	240	1	0	0	0	0	1	0	0	0	14558	1291	45	2	1490	2	SLC24A5	15	48434501	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2738940	48434501	54096891	3098	21948										
FBN1	0	genome.wustl.edu	37	chr15	48714260	48714260	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcttggttgcacactcatCaagatctacaagaaaatgca	7	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	48714260	48714260	C	G	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.7459	p.D2487H	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	66	0	0	53	12	18.46	-	-	-	G	48714260	C	G	48714260	3	3	240	1	0	0	0	0	1	0	0	0	5748	826	29	2	1180	2	FBN1	15	48714260	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	279759	48714260	53817132	3099	21949										
FBN1	0	genome.wustl.edu	37	chr15	48720660	48720660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctggcttcgtctgacattCattctcatctgtttgatttt	6	11	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	48720660	48720660	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.6880	p.E2294K	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	87	0	0	66	13	16.46	-	-	-	T	48720660	C	T	48720660	3	4	240	1	0	0	0	0	1	0	0	0	5748	835	29	2	1775	2	FBN1	15	48720660	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6400	48720660	53810732	3100	21950										
FBN1	0	genome.wustl.edu	37	chr15	48729539	48729539	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caactgctgaatcatcaggtCccacgatgatcccacttcca	6	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	48729539	48729539	C	G	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.6359	p.G2120A	1.000	superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	51	0	0	37	13	26	-	-	-	G	48729539	C	G	48729539	3	3	240	1	0	0	0	0	1	0	0	0	5748	855	30	2	2316	2	FBN1	15	48729539	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8879	48729539	53801853	3101	21951										
CEP152	0	genome.wustl.edu	37	chr15	49048160	49048160	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtatcttgaaatgctttCtgtatgcagccctttagttt	8	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49048160	49048160	C	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.3285	p.Q1095H	0.999	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	139	0	0	103	31	23.13	-	-	-	A	49048160	C	A	49048160	3	1	240	1	0	0	0	0	1	0	0	0	3277	912	32	2	1707	2	CEP152	15	49048160	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	318621	49048160	53483232	3102	21952										
CEP152	0	genome.wustl.edu	37	chr15	49076222	49076222	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcctctagacttcttgtCaacttattaatgatctcagt	4	11	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49076222	49076222	C	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.1269	p.L423	0.898	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	110	0	0	76	25	24.75	-	-	-	T	49076222	C	T	49076222	2	4	240	1	0	0	0	0	0	0	0	1	3277	825	29	2		2	CEP152	15	49076222	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	28062	49076222	53455170	3103	21953										
CEP152	0	genome.wustl.edu	37	chr15	49089677	49089677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatctccaccttcttcagGatggtacacaggatgtcggt	9	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49089677	49089677	G	C	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.361	p.P121A	0.063	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	145	0	0	104	30	22.39	-	-	-	C	49089677	G	C	49089677	3	2	240	1	0	0	0	0	1	0	0	0	3277	1174	41	2	4691	2	CEP152	15	49089677	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13455	49089677	53441715	3104	21954										
SHC4	0	genome.wustl.edu	37	chr15	49143415	49143415	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctttgttctaaacagttctCatatacactgctgcacttgg	7	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49143415	49143415	C	T	SNP	SHC4	ENST00000332408	human	ensembl	69_37n	-1	known	missense	c.1273	p.E425K	0.960	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	123	0	0	89	20	18.18	-	-	-	T	49143415	C	T	49143415	3	4	240	1	0	0	0	0	1	0	0	0	14362	835	29	2	635	2	SHC4	15	49143415	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53738	49143415	53387977	3105	21955										
SHC4	0	genome.wustl.edu	37	chr15	49254971	49254971	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatcaaggtgcacagtgggGtggggctctcctgcgacggc	18	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49254971	49254971	G	C	SNP	SHC4	ENST00000332408	human	ensembl	69_37n	-1	known	missense	c.242	p.T81S	0.998	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	20	0	0	16	9	36	-	-	-	C	49254971	G	C	49254971	3	2	240	1	0	0	0	0	1	0	0	0	14362	1261	44	4	1698	4	SHC4	15	49254971	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	111556	49254971	53276421	3106	21956										
FGF7	0	genome.wustl.edu	37	chr15	49776613	49776613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaggggaaatgtttgttgCcttaaatcaaaaggggattc	13	5	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	49776613	49776613	C	T	SNP	FGF7	ENST00000267843	human	ensembl	69_37n	1	known	missense	c.497	p.A166V	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF7	HGNC	ENSG00000140285	69	0	0	45	13	22.41	-	-	-	T	49776613	C	T	49776613	3	4	240	1	0	0	0	0	1	0	0	0	5903	739	26	4	507	4	FGF7	15	49776613	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	521642	49776613	52754779	3107	21957										
GABPB1	0	genome.wustl.edu	37	chr15	50593097	50593097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacagcagatacacccgtttCatctgtaagaaaaaagaaaa	6	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	50593097	50593097	C	T	SNP	GABPB1	ENST00000220429	human	ensembl	69_37n	-1	known	missense	c.622	p.E208K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB1	HGNC	ENSG00000104064	65	0	0	52	25	32.47	-	-	-	T	50593097	C	T	50593097	3	4	240	1	0	0	0	0	1	0	0	0	6207	835	29	2	629	2	GABPB1	15	50593097	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	816484	50593097	51938295	3108	21958										
TNFAIP8L3	0	genome.wustl.edu	37	chr15	51350622	51350622	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgaagcgcaagactctttGaactaaaaacatcaggacct	7	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	51350622	51350622	G	C	SNP	TNFAIP8L3	ENST00000327536	human	ensembl	69_37n	-1	known	nonsense	c.335	p.S112*	1.000	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8L3	HGNC	ENSG00000183578	54	0	0	61	24	28.24	-	-	-	C	51350622	G	C	51350622	4	2	240	1	0	0	0	0	0	1	0	0	16374	1294	45	2	547	2	TNFAIP8L3	15	51350622	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	757525	51350622	51180770	3109	21959										
GLDN	0	genome.wustl.edu	37	chr15	51693901	51693901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacgttgtttacaacaactCtctctactaccacaaagggg	7	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	51693901	51693901	C	G	SNP	GLDN	ENST00000335449	human	ensembl	69_37n	1	known	missense	c.1139	p.S380C	0.930	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417	108	0	0	91	19	17.12	-	-	-	G	51693901	C	G	51693901	3	3	240	1	0	0	0	0	1	0	0	0	6486	913	32	2	1173	2	GLDN	15	51693901	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	343279	51693901	50837491	3110	21960										
DMXL2	0	genome.wustl.edu	37	chr15	51772888	51772888	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttcgtctttctgcatgctCtcgtttggcctgcaatcttc	7	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	51772888	51772888	C	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.6415	p.E2139Q	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	100	0	0	53	19	26.39	-	-	-	G	51772888	C	G	51772888	3	3	240	1	0	0	0	0	1	0	0	0	4631	922	32	2	2778	2	DMXL2	15	51772888	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78987	51772888	50758504	3111	21961										
DMXL2	0	genome.wustl.edu	37	chr15	51773047	51773047	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgattcatgattacatatctCatgcaaggcagcaatttcct	6	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	51773047	51773047	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.6256	p.E2086K	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	62	0	0	65	15	18.75	-	-	-	T	51773047	C	T	51773047	3	4	240	1	0	0	0	0	1	0	0	0	4631	835	29	2	2937	2	DMXL2	15	51773047	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	159	51773047	50758345	3112	21962										
DMXL2	0	genome.wustl.edu	37	chr15	51791547	51791547	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgatcttgcattgctgcctCttctgcattagaactatcag	7	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	51791547	51791547	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.3874	p.E1292K	0.998	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	50	0	0	36	12	25	-	-	-	T	51791547	C	T	51791547	3	4	240	1	0	0	0	0	1	0	0	0	4631	922	32	2	5343	2	DMXL2	15	51791547	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18500	51791547	50739845	3113	21963										
MYO5C	0	genome.wustl.edu	37	chr15	52540977	52540977	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaccttcacatttatactCtacctatacagagaaagcaa	4	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	52540977	52540977	C	G	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	missense	c.1666	p.E556Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	90	0	0	98	21	17.65	-	-	-	G	52540977	C	G	52540977	3	3	240	1	0	0	0	0	1	0	0	0	10152	922	32	2	3674	2	MYO5C	15	52540977	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	749430	52540977	49990415	3114	21964										
MYO5A	0	genome.wustl.edu	37	chr15	52645845	52645845	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcacctctaatttgtggtCtttcttcttcctagggaaaa	7	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	52645845	52645845	C	G	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.3578	p.R1193T	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	144	0	0	94	22	18.97	-	-	-	G	52645845	C	G	52645845	3	3	240	1	0	0	0	0	1	0	0	0	10150	913	32	2	2049	2	MYO5A	15	52645845	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	104868	52645845	49885547	3115	21965										
UNC13C	0	genome.wustl.edu	37	chr15	54305292	54305292	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttttaaaagcactgtaaaGaagattgcaaagtgttcatc	7	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	54305292	54305292	G	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.192	p.K64N	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	93	0	0	76	21	21.65	-	-	-	C	54305292	G	C	54305292	3	2	240	1	0	0	0	0	1	0	0	0	17083	933	33	2	194	2	UNC13C	15	54305292	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1659447	54305292	48226100	3116	21966										
UNC13C	0	genome.wustl.edu	37	chr15	54542443	54542443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatgcacgtcttcaagaaGaccttgcaggcactgatcta	8	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	54542443	54542443	G	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.3249	p.K1083N	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	93	0	0	42	36	46.15	-	-	-	C	54542443	G	C	54542443	3	2	240	1	0	0	0	0	1	0	0	0	17083	933	33	2	3271	2	UNC13C	15	54542443	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	237151	54542443	47988949	3117	21967										
UNC13C	0	genome.wustl.edu	37	chr15	54630588	54630588	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaaagccccccaaaagcGagcatggtggtgaaggactg	13	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	54630588	54630588	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.4614	p.A1538	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	106	0	0	58	27	31.76	-	-	-	A	54630588	G	A	54630588	2	1	240	1	0	0	0	0	0	0	0	1	17083	1045	37	1		1	UNC13C	15	54630588	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	88145	54630588	47900804	3118	21968										
UNC13C	0	genome.wustl.edu	37	chr15	54919071	54919071	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggcttatgaacttcatctCtcagttaaggattactgctt	9	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	54919071	54919071	C	G	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.6405	p.L2135	0.982	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	75	0	0	44	17	27.87	-	-	-	G	54919071	C	G	54919071	2	3	240	1	0	0	0	0	0	0	0	1	17083	900	32	2		2	UNC13C	15	54919071	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	288483	54919071	47612321	3119	21969										
CCPG1	0	genome.wustl.edu	37	chr15	55670508	55670508	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaagtttacctcaattgttGagctggtttcctccaaagct	7	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	55670508	55670508	G	C	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	nonsense	c.242	p.S81*	0.548	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	135	0	0	74	23	23.71	-	-	-	C	55670508	G	C	55670508	4	2	240	1	0	0	0	0	0	1	0	0	2967	1294	45	2	2051	2	CCPG1	15	55670508	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	751437	55670508	46860884	3120	21970										
PYGO1	0	genome.wustl.edu	37	chr15	55839113	55839113	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgtggctggttcctgagtGagtaaggaccacagtatggg	17	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	55839113	55839113	G	A	SNP	PYGO1	ENST00000302000	human	ensembl	69_37n	-1	known	missense	c.368	p.S123L	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016	68	0	0	54	22	28.95	-	-	-	A	55839113	G	A	55839113	3	1	240	1	0	0	0	0	1	0	0	0	12946	1294	45	2	895	2	PYGO1	15	55839113	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	168605	55839113	46692279	3121	21971										
PRTG	0	genome.wustl.edu	37	chr15	55930811	55930811	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaagctgatccacatgtaaTcgaacggcaaattcgtattt	8	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	55930811	55930811	T	C	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	silent	c.2388	p.R796	0.093	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	47	0	0	35	10	22.22	-	-	-	C	55930811	T	C	55930811	2	2	240	1	0	0	0	0	0	0	0	1	12718	1422	50	5		5	PRTG	15	55930811	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	91698	55930811	46600581	3122	21972										
RFX7	0	genome.wustl.edu	37	chr15	56390356	56390356	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaggatttccattaggaaGattagtcactccattgcttg	9	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	56390356	56390356	G	C	SNP	RFX7	ENST00000423270	human	ensembl	69_37n	-1	known	missense	c.1030	p.L344V	0.594	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	135	0	0	87	27	23.68	-	-	-	C	56390356	G	C	56390356	3	2	240	1	0	0	0	0	1	0	0	0	13351	942	33	2	3360	2	RFX7	15	56390356	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	459545	56390356	46141036	3123	21973										
TCF12	0	genome.wustl.edu	37	chr15	57555420	57555420	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcagatgacatgaagtcaGatgatgaatcctcccaaaaa	7	9	2	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	57555420	57555420	G	C	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.1693	p.D565H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	84	0	0	43	43	50	-	-	-	C	57555420	G	C	57555420	3	2	240	1	0	0	0	0	1	0	0	0	15782	942	33	2	1832	2	TCF12	15	57555420	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1165064	57555420	44975972	3124	21974										
CGNL1	0	genome.wustl.edu	37	chr15	57730708	57730708	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaaaatcaccagccttctGagagtaattggctaaaaacg	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	57730708	57730708	G	C	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	missense	c.511	p.E171Q	0.042	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	36	0	0	19	10	34.48	-	-	-	C	57730708	G	C	57730708	3	2	240	1	0	0	0	0	1	0	0	0	3333	1291	45	2	513	2	CGNL1	15	57730708	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	175288	57730708	44800684	3125	21975										
VPS13C	0	genome.wustl.edu	37	chr15	62212521	62212521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagtagaagcagtgccctCtgaaaaaccctgaaaaggaa	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	62212521	62212521	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.7222	p.E2408Q	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	59	0	0	36	19	34.55	-	-	-	G	62212521	C	G	62212521	3	3	240	1	0	0	0	0	1	0	0	0	17288	922	32	2	4183	2	VPS13C	15	62212521	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4481813	62212521	40318871	3126	21976										
VPS13C	0	genome.wustl.edu	37	chr15	62276051	62276051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctccacaggctgggactGaacaatcagagtctggtcag	12	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	62276051	62276051	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	nonsense	c.1882	p.Q628*	0.916	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	50	0	0	50	13	20.63	-	-	-	A	62276051	G	A	62276051	4	1	240	1	0	0	0	0	0	1	0	0	17288	1299	45	2	9671	2	VPS13C	15	62276051	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	63530	62276051	40255341	3127	21977										
VPS13C	0	genome.wustl.edu	37	chr15	62299590	62299590	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttataactcttgagtaactGcctgtgcttttttatgttac	6	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	62299590	62299590	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	nonsense	c.1207	p.Q403*	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	312	0	0	192	53	21.63	-	-	-	A	62299590	G	A	62299590	4	1	240	1	0	0	0	0	0	1	0	0	17288	1328	46	4	10366	4	VPS13C	15	62299590	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23539	62299590	40231802	3128	21978										
CA12	0	genome.wustl.edu	37	chr15	63673855	63673855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttcactggggccgggctgGaaggctgttcctttaagatc	14	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	63673855	63673855	G	A	SNP	CA12	ENST00000178638	human	ensembl	69_37n	-1	known	missense	c.65	p.S22F	0.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA12	HGNC	ENSG00000074410	22	0	0	14	5	26.32	-	-	-	A	63673855	G	A	63673855	3	1	240	1	0	0	0	0	1	0	0	0	2538	1174	41	2	1043	2	CA12	15	63673855	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1374265	63673855	38857537	3129	21979										
HERC1	0	genome.wustl.edu	37	chr15	63937810	63937810	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatagagccccagagtttCacactgtcttctttggcaca	8	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	63937810	63937810	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.10950	p.V3650	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	75	0	0	73	16	17.98	-	-	-	G	63937810	C	G	63937810	2	3	240	1	0	0	0	0	0	0	0	1	7108	813	29	2		2	HERC1	15	63937810	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	263955	63937810	38593582	3130	21980										
HERC1	0	genome.wustl.edu	37	chr15	63955206	63955206	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtaggccaatccagtacctCtgggatccacattcccagaa	9	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	63955206	63955206	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.8878	p.E2960Q	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	80	0	0	65	22	25.29	-	-	-	G	63955206	C	G	63955206	3	3	240	1	0	0	0	0	1	0	0	0	7108	922	32	2	5847	2	HERC1	15	63955206	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17396	63955206	38576186	3131	21981										
HERC1	0	genome.wustl.edu	37	chr15	64019902	64019902	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcagcagctggcaggagtCtattaaggcaatcaagaggt	13	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	64019902	64019902	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3290	p.R1097K	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	87	0	0	49	19	27.94	-	-	-	T	64019902	C	T	64019902	3	4	240	1	0	0	0	0	1	0	0	0	7108	913	32	2	11543	2	HERC1	15	64019902	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64696	64019902	38511490	3132	21982										
SNX22	0	genome.wustl.edu	37	chr15	64445450	64445450	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgtcctctccagggcatcCtgtacctgaaccaggaggtg	11	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	64445450	64445450	C	A	SNP	SNX22	ENST00000325881	human	ensembl	69_37n	1	known	missense	c.271	p.L91M	0.977	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX22	HGNC	ENSG00000157734	31	0	0	31	7	18.42	-	-	-	A	64445450	C	A	64445450	3	1	240	1	0	0	0	0	1	0	0	0	14983	680	24	4	285	4	SNX22	15	64445450	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	425548	64445450	38085942	3133	21983										
RASL12	0	genome.wustl.edu	37	chr15	65351707	65351707	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgcagtgtccatgaccctCaggtggacaggctggtggtc	14	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65351707	65351707	C	T	SNP	RASL12	ENST00000220062	human	ensembl	69_37n	-1	known	silent	c.210	p.L70	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL12	HGNC	ENSG00000103710	80	0	0	76	12	13.64	-	-	-	T	65351707	C	T	65351707	2	4	240	1	0	0	0	0	0	0	0	1	13166	813	29	2		2	RASL12	15	65351707	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	906257	65351707	37179685	3134	21984										
PDCD7	0	genome.wustl.edu	37	chr15	65412281	65412281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtctcatctgctgaggctgGaggacagacccctgggcaga	14	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65412281	65412281	G	A	SNP	PDCD7	ENST00000204549	human	ensembl	69_37n	-1	known	missense	c.1021	p.P341S	1.000	NULL	NULL	-	no_errors	PDCD7	HGNC	ENSG00000090470	52	0	0	38	15	28.3	-	-	-	A	65412281	G	A	65412281	3	1	240	1	0	0	0	0	1	0	0	0	11698	1174	41	2	448	2	PDCD7	15	65412281	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	60574	65412281	37119111	3135	21985										
PARP16	0	genome.wustl.edu	37	chr15	65559001	65559001	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctcgttctcctttggtctCataaaatttggcgttggctg	10	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65559001	65559001	C	T	SNP	PARP16	ENST00000261888	human	ensembl	69_37n	-1	known	missense	c.418	p.E140K	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP16	HGNC	ENSG00000138617	188	0	0	138	35	20.23	-	-	-	T	65559001	C	T	65559001	3	4	240	1	0	0	0	0	1	0	0	0	11533	835	29	2	569	2	PARP16	15	65559001	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	146720	65559001	36972391	3136	21986										
DPP8	0	genome.wustl.edu	37	chr15	65804679	65804679	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtccatctggatcattcctCttcacaaacatgaaatcatg	6	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65804679	65804679	C	T	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	silent	c.261	p.K87	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	106	1	0.93	50	50	49.5	-	-	-	T	65804679	C	T	65804679	2	4	240	1	0	0	0	0	0	0	0	1	4767	912	32	2		2	DPP8	15	65804679	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	245678	65804679	36726713	3137	21987										
C15orf44	0	genome.wustl.edu	37	chr15	65885905	65885905	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgccagtacccacctcatCaccttctgtgaaaaaaagag	7	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65885905	65885905	C	T	SNP	C15orf44	ENST00000567744	human	ensembl	69_37n	-1	known	missense	c.955	p.D319N	1.000	NULL	NULL	-	no_errors	C15orf44	HGNC	ENSG00000138614	52	0	0	60	21	25.93	-	-	-	T	65885905	C	T	65885905	3	4	240	1	0	0	0	0	1	0	0	0	1810	826	29	2	729	2	C15orf44	15	65885905	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	81226	65885905	36645487	3138	21988										
SLC24A1	0	genome.wustl.edu	37	chr15	65943054	65943054	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatggagggggaagtgatgGaggggatagcgaagaggagg	23	1	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	65943054	65943054	G	C	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	missense	c.2567	p.G856A	0.470	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	65	0	0	70	21	23.08	-	-	-	C	65943054	G	C	65943054	3	2	240	1	0	0	0	0	1	0	0	0	14554	1174	41	2	695	2	SLC24A1	15	65943054	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	57149	65943054	36588338	3139	21989										
DIS3L	0	genome.wustl.edu	37	chr15	66613045	66613045	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctggtggaaaacagtatttCagttattcctttctcagaag	8	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	66613045	66613045	C	T	SNP	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	missense	c.1301	p.S434L	0.004	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	131	0	0	82	26	24.07	-	-	-	T	66613045	C	T	66613045	3	4	240	1	0	0	0	0	1	0	0	0	4572	838	29	2	1335	2	DIS3L	15	66613045	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	669991	66613045	35918347	3140	21990										
DIS3L	0	genome.wustl.edu	37	chr15	66615123	66615123	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaaaagccatctcgtattCagcattgaccccaaaggttg	9	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	66615123	66615123	C	T	SNP	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	silent	c.1425	p.F475	1.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	58	0	0	55	16	22.54	-	-	-	T	66615123	C	T	66615123	2	4	240	1	0	0	0	0	0	0	0	1	4572	825	29	2		2	DIS3L	15	66615123	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2078	66615123	35916269	3141	21991										
MAP2K5	0	genome.wustl.edu	37	chr15	68061993	68061993	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagccatttgtacatttcatCactcagtggtgagcccgttt	9	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	68061993	68061993	C	T	SNP	MAP2K5	ENST00000178640	human	ensembl	69_37n	1	known	silent	c.1188	p.I396	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K5	HGNC	ENSG00000137764	121	0	0	72	36	33.33	-	-	-	T	68061993	C	T	68061993	2	4	240	1	0	0	0	0	0	0	0	1	9311	816	29	2		2	MAP2K5	15	68061993	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1446870	68061993	34469399	3142	21992										
ITGA11	0	genome.wustl.edu	37	chr15	68642965	68642965	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattgcttaccttccaggctGaagattctgtcccccagggc	9	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	68642965	68642965	G	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.1050	p.F350	1.000	smart_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	90	0	0	100	25	20	-	-	-	A	68642965	G	A	68642965	2	1	240	1	0	0	0	0	0	0	0	1	7928	1281	45	2		2	ITGA11	15	68642965	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	580972	68642965	33888427	3143	21993										
NOX5	0	genome.wustl.edu	37	chr15	69331260	69331260	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacctggtgactacttgtatCtgaacatccccaccattgct	7	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	69331260	69331260	C	G	SNP	NOX5	ENST00000388866	human	ensembl	69_37n	1	known	missense	c.1435	p.L479V	0.934	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NOX5	HGNC	ENSG00000255346	107	0	0	91	23	20.18	-	-	-	G	69331260	C	G	69331260	3	3	240	1	0	0	0	0	1	0	0	0	10631	912	32	2	1502	2	NOX5	15	69331260	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	688295	69331260	33200132	3144	21994										
TLE3	0	genome.wustl.edu	37	chr15	70345643	70345643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccgtgttgtccaggccccCtgtccacagtttggtgccat	10	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	70345643	70345643	C	T	SNP	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	missense	c.1906	p.G636R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	104	0	0	72	20	21.74	-	-	-	T	70345643	C	T	70345643	3	4	240	1	0	0	0	0	1	0	0	0	16035	681	24	4	428	4	TLE3	15	70345643	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1014383	70345643	32185749	3145	21995										
THSD4	0	genome.wustl.edu	37	chr15	72030190	72030190	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctgagatgttcacctcaGaatcggcacagaccttccca	7	16	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	72030190	72030190	G	A	SNP	THSD4	ENST00000261862	human	ensembl	69_37n	1	known	missense	c.1750	p.E584K	0.045	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720	138	1	0.72	122	26	17.57	-	-	-	A	72030190	G	A	72030190	3	1	240	1	0	0	0	0	1	0	0	0	15973	943	33	2	1788	2	THSD4	15	72030190	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1684547	72030190	30501202	3146	21996										
HEXA	0	genome.wustl.edu	37	chr15	72638658	72638658	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatcaccagagccttctgctCaggggtacctgagggaaaac	11	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	72638658	72638658	C	G	SNP	HEXA	ENST00000268097	human	ensembl	69_37n	-1	known	missense	c.1339	p.E447Q	0.129	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXA	HGNC	ENSG00000213614	36	0	0	34	8	19.05	-	-	-	G	72638658	C	G	72638658	3	3	240	1	0	0	0	0	1	0	0	0	7124	835	29	2	262	2	HEXA	15	72638658	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	608468	72638658	29892734	3147	21997										
NEO1	0	genome.wustl.edu	37	chr15	73590864	73590864	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcgcccttcccacccattGaagagcttcgccgtgccagc	9	17	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	73590864	73590864	G	A	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	silent	c.4077	p.L1359	0.999	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	92	0	0	77	24	23.76	-	-	-	A	73590864	G	A	73590864	2	1	240	1	0	0	0	0	0	0	0	1	10408	1281	45	2		2	NEO1	15	73590864	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	952206	73590864	28940528	3148	21998										
ISLR	0	genome.wustl.edu	37	chr15	74467697	74467697	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acattggccgagggcaccttCaccccgctcaccgcgctgtc	10	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	74467697	74467697	C	T	SNP	ISLR	ENST00000249842	human	ensembl	69_37n	1	known	silent	c.498	p.F166	0.011	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ISLR	HGNC	ENSG00000129009	29	0	0	30	5	14.29	-	-	-	T	74467697	C	T	74467697	2	4	240	1	0	0	0	0	0	0	0	1	7912	825	29	2		2	ISLR	15	74467697	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	876833	74467697	28063695	3149	21999										
ISLR	0	genome.wustl.edu	37	chr15	74468369	74468369	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgtggtcatcatctacctCagccgtgctgggaaccctga	10	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	74468369	74468369	C	G	SNP	ISLR	ENST00000249842	human	ensembl	69_37n	1	known	silent	c.1170	p.L390	0.175	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ISLR	HGNC	ENSG00000129009	23	0	0	27	6	18.18	-	-	-	G	74468369	C	G	74468369	2	3	240	1	0	0	0	0	0	0	0	1	7912	813	29	2		2	ISLR	15	74468369	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	672	74468369	28063023	3150	22000										
CLK3	0	genome.wustl.edu	37	chr15	74911609	74911609	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccgatggaagaggaggagGtcctacagtcgggaacatga	15	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	74911609	74911609	G	T	SNP	CLK3	ENST00000395066	human	ensembl	69_37n	1	known	missense	c.516	p.R172S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK3	HGNC	ENSG00000179335	51	0	0	63	14	18.18	-	-	-	T	74911609	G	T	74911609	3	4	240	1	0	0	0	0	1	0	0	0	3568	1252	44	4	522	4	CLK3	15	74911609	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	443240	74911609	27619783	3151	22001										
CYP1A1	0	genome.wustl.edu	37	chr15	75014943	75014943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttatcaggacctcagcctCcttgctcacatgctcttcca	6	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	75014943	75014943	C	T	SNP	CYP1A1	ENST00000379727	human	ensembl	69_37n	-1	known	missense	c.496	p.E166K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465	19	0	0	34	6	15	-	-	-	T	75014943	C	T	75014943	3	4	240	1	0	0	0	0	1	0	0	0	4180	864	30	2	1066	2	CYP1A1	15	75014943	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	103334	75014943	27516449	3152	22002										
ULK3	0	genome.wustl.edu	37	chr15	75131059	75131059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagacgatggccttgagctCctcagcccgggacacgtact	13	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	75131059	75131059	C	T	SNP	ULK3	ENST00000440863	human	ensembl	69_37n	-1	known	missense	c.1027	p.E343K	1.000	pfam_MIT,smart_MIT	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIT,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_MIT,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK3	HGNC	ENSG00000140474	37	0	0	25	5	16.67	-	-	-	T	75131059	C	T	75131059	3	4	240	1	0	0	0	0	1	0	0	0	17074	864	30	2	419	2	ULK3	15	75131059	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	116116	75131059	27400333	3153	22003										
MAN2C1	0	genome.wustl.edu	37	chr15	75651118	75651118	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcaaatagcacaaactGgttccccacggcgccctcag	7	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	75651118	75651118	G	A	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	nonsense	c.2173	p.Q725*	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	56	0	0	37	12	23.53	-	-	-	A	75651118	G	A	75651118	4	1	240	1	0	0	0	0	0	1	0	0	9289	1357	47	4	981	4	MAN2C1	15	75651118	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	520059	75651118	26880274	3154	22004										
SIN3A	0	genome.wustl.edu	37	chr15	75702228	75702228	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcggatctggcagccattCtggctgggcctctgcggctt	14	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	75702228	75702228	C	T	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	silent	c.1266	p.Q422	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	137	0	0	65	71	52.21	-	-	-	T	75702228	C	T	75702228	2	4	240	1	0	0	0	0	0	0	0	1	14414	912	32	2		2	SIN3A	15	75702228	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	51110	75702228	26829164	3155	22005										
PTPN9	0	genome.wustl.edu	37	chr15	75801285	75801285	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggactttgtccttcaggagGagactgatgatggaataggg	15	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	75801285	75801285	G	C	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	silent	c.612	p.L204	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	60	0	0	44	16	26.67	-	-	-	C	75801285	G	C	75801285	2	2	240	1	0	0	0	0	0	0	0	1	12877	1161	41	2		2	PTPN9	15	75801285	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	99057	75801285	26730107	3156	22006										
UBE2Q2	0	genome.wustl.edu	37	chr15	76152225	76152225	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgtgttttgtagcttcgtCagcaattgaagtggttgata	11	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	76152225	76152225	C	G	SNP	UBE2Q2	ENST00000267938	human	ensembl	69_37n	1	known	missense	c.289	p.Q97E	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q2	HGNC	ENSG00000140367	96	0	0	78	26	25	-	-	-	G	76152225	C	G	76152225	3	3	240	1	0	0	0	0	1	0	0	0	16967	827	29	2	435	2	UBE2Q2	15	76152225	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	350940	76152225	26379167	3157	22007										
LINGO1	0	genome.wustl.edu	37	chr15	77907324	77907324	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctgcagccggagcagctCatgcaacatggagccctcaa	10	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	77907324	77907324	C	G	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.925	p.E309Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	81	0	0	74	25	25.25	-	-	-	G	77907324	C	G	77907324	3	3	240	1	0	0	0	0	1	0	0	0	8870	835	29	2	941	2	LINGO1	15	77907324	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1755099	77907324	24624068	3158	22008										
LINGO1	0	genome.wustl.edu	37	chr15	77907918	77907918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgttgaaggcgccgggctCcacggcgctcacgatgttct	14	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	77907918	77907918	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.331	p.E111K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	44	0	0	23	13	36.11	-	-	-	T	77907918	C	T	77907918	3	4	240	1	0	0	0	0	1	0	0	0	8870	864	30	2	1535	2	LINGO1	15	77907918	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	594	77907918	24623474	3159	22009										
IREB2	0	genome.wustl.edu	37	chr15	78789521	78789521	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaatacacaaagatcatttGattggaattggcatagctcc	7	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	78789521	78789521	G	C	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.2649	p.L883F	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	111	0	0	84	20	19.23	-	-	-	C	78789521	G	C	78789521	3	2	240	1	0	0	0	0	1	0	0	0	7880	1281	45	2	2731	2	IREB2	15	78789521	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	881603	78789521	23741871	3160	22010										
CHRNA5	0	genome.wustl.edu	37	chr15	78882189	78882189	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagtacgaaaacagtcatCaggtacaatggcactgtcac	8	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	78882189	78882189	C	G	SNP	CHRNA5	ENST00000299565	human	ensembl	69_37n	1	known	missense	c.456	p.I152M	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA5	HGNC	ENSG00000169684	179	0	0	93	88	48.35	-	-	-	G	78882189	C	G	78882189	3	3	240	1	0	0	0	0	1	0	0	0	3415	816	29	2	474	2	CHRNA5	15	78882189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92668	78882189	23649203	3161	22011										
CHRNA3	0	genome.wustl.edu	37	chr15	78911198	78911198	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctacaggccggatgatctCattgtaatcttcaaacagcc	9	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	78911198	78911198	C	T	SNP	CHRNA3	ENST00000326828	human	ensembl	69_37n	-1	known	missense	c.142	p.E48K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644	45	0	0	39	12	23.53	-	-	-	T	78911198	C	T	78911198	3	4	240	1	0	0	0	0	1	0	0	0	3413	835	29	2	1480	2	CHRNA3	15	78911198	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29009	78911198	23620194	3162	22012										
MORF4L1	0	genome.wustl.edu	37	chr15	79183909	79183909	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccgggtagatcctactgttGaaaatgtgagtttttcttgt	10	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	79183909	79183909	G	A	SNP	MORF4L1	ENST00000331268	human	ensembl	69_37n	1	known	missense	c.550	p.E184K	1.000	pfam_MRG,pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	-	no_errors	MORF4L1	HGNC	ENSG00000185787	42	0	0	43	15	25.86	-	-	-	A	79183909	G	A	79183909	3	1	240	1	0	0	0	0	1	0	0	0	9778	1291	45	2	580	2	MORF4L1	15	79183909	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	272711	79183909	23347483	3163	22013										
RASGRF1	0	genome.wustl.edu	37	chr15	79282575	79282575	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgatataaggggtcctttCattcttttccagtttcatcc	6	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	79282575	79282575	C	T	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.3220	p.E1074K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	129	0	0	104	35	25.18	-	-	-	T	79282575	C	T	79282575	3	4	240	1	0	0	0	0	1	0	0	0	13155	835	29	2	625	2	RASGRF1	15	79282575	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98666	79282575	23248817	3164	22014										
RASGRF1	0	genome.wustl.edu	37	chr15	79296384	79296384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggagagcttccgccggcGgctcggtgacgatgtcttgg	17	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	79296384	79296384	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.2257	p.R753C	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	29	0	0	36	13	26.53	-	-	-	A	79296384	G	A	79296384	3	1	240	1	0	0	0	0	1	0	0	0	13155	1116	39	1	1616	1	RASGRF1	15	79296384	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13809	79296384	23235008	3165	22015										
RASGRF1	0	genome.wustl.edu	37	chr15	79312447	79312447	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgagggatatgactccattCtgaaaaagagcagcaggggc	13	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	79312447	79312447	C	G	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	splice_site	c.1543-1	e11-1	1.000	-	-	-	no_errors	RASGRF1	HGNC	ENSG00000058335	92	0	0	74	32	30.19	-	-	-	G	79312447	C	G	79312447	5	3	240	1	0	0	0	0	0	0	1	0	13155	927	32	2	2351	2	RASGRF1	15	79312447	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16063	79312447	23218945	3166	22016										
RASGRF1	0	genome.wustl.edu	37	chr15	79320179	79320179	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccggatgttctccgtctCacttacttcatcgtgcatta	6	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	79320179	79320179	C	T	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.1285	p.E429K	1.000	superfamily_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	62	0	0	47	35	42.68	-	-	-	T	79320179	C	T	79320179	3	4	240	1	0	0	0	0	1	0	0	0	13155	835	29	2	2616	2	RASGRF1	15	79320179	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7732	79320179	23211213	3167	22017										
IL16	0	genome.wustl.edu	37	chr15	81517852	81517852	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgatgatggctctagccctGatgagaaatatcctgatccc	10	10	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	81517852	81517852	G	C	SNP	IL16	ENST00000302987	human	ensembl	69_37n	1	known	missense	c.112	p.D38H	0.978	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Interleukin-16	-	no_errors	IL16	HGNC	ENSG00000172349	60	0	0	46	17	26.98	-	-	-	C	81517852	G	C	81517852	3	2	240	1	0	0	0	0	1	0	0	0	7687	1290	45	2	114	2	IL16	15	81517852	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2197673	81517852	21013540	3168	22018										
CPEB1	0	genome.wustl.edu	37	chr15	83218294	83218294	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagatggctgccagggcctCagcatttagcattccatgca	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	83218294	83218294	C	T	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444K	1.000	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	58	0	0	35	5	12.5	-	-	-	T	83218294	C	T	83218294	3	4	240	1	0	0	0	0	1	0	0	0	3830	835	29	2	386	2	CPEB1	15	83218294	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1700442	83218294	19313098	3169	22019										
AP3B2	0	genome.wustl.edu	37	chr15	83328413	83328413	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctccagctggccgggcatCcagggtcagcagaacgaggc	15	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	83328413	83328413	C	G	SNP	AP3B2	ENST00000261722	human	ensembl	69_37n	-1	known	missense	c.3148	p.D1050H	1.000	pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_complex_bsu	-	no_errors	AP3B2	HGNC	ENSG00000103723	49	0	0	41	25	37.88	-	-	-	G	83328413	C	G	83328413	3	3	240	1	0	0	0	0	1	0	0	0	746	855	30	2	104	2	AP3B2	15	83328413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	110119	83328413	19202979	3170	22020										
C15orf40	0	genome.wustl.edu	37	chr15	83677321	83677321	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatccaaaaccacatcactCttcctgagttctaggacctt	4	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	83677321	83677321	C	G	SNP	C15orf40	ENST00000451195	human	ensembl	69_37n	-1	known	missense	c.345	p.K115N	1.000	pfam_DUF167,superfamily_DUF167	pfam_DUF167,superfamily_DUF167	-	no_errors	C15orf40	HGNC	ENSG00000169609	63	0	0	45	13	22.41	-	-	-	G	83677321	C	G	83677321	3	3	240	1	0	0	0	0	1	0	0	0	1806	912	32	2	596	2	C15orf40	15	83677321	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	348908	83677321	18854071	3171	22021										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84373150	84373150	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtttttcagaccacagctGagaaatctcctggagcctat	8	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	84373150	84373150	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	nonsense	c.79	p.E27*	0.990	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	108	0	0	56	21	27.27	-	-	-	T	84373150	G	T	84373150	4	4	240	1	0	0	0	0	0	1	0	0	276	1291	45	2	85	2	ADAMTSL3	15	84373150	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	695829	84373150	18158242	3172	22022										
ZSCAN2	0	genome.wustl.edu	37	chr15	85164113	85164113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatgtccccagtgtgggaaGaccttcagccggaaatccca	11	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	85164113	85164113	G	C	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	missense	c.687	p.K229N	0.849	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	35	0	0	26	10	27.78	-	-	-	C	85164113	G	C	85164113	3	2	240	1	0	0	0	0	1	0	0	0	18323	933	33	2	783	2	ZSCAN2	15	85164113	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	790963	85164113	17367279	3173	22023										
ZNF592	0	genome.wustl.edu	37	chr15	85326738	85326738	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcagcgtctaaagccagctCattccaagctgtcctcttgt	9	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	85326738	85326738	C	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.832	p.H278Y	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	26	0	0	32	10	23.81	-	-	-	T	85326738	C	T	85326738	3	4	240	1	0	0	0	0	1	0	0	0	18118	826	29	2	834	2	ZNF592	15	85326738	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162625	85326738	17204654	3174	22024										
ALPK3	0	genome.wustl.edu	37	chr15	85400440	85400440	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccgagggccacagtcatCaggcccagtcgaggccaagc	13	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	85400440	85400440	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.3077	p.S1026L	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	42	0	0	41	16	28.07	-	-	-	T	85400440	C	T	85400440	3	4	240	1	0	0	0	0	1	0	0	0	546	838	29	2	3099	2	ALPK3	15	85400440	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	73702	85400440	17130952	3175	22025										
ALPK3	0	genome.wustl.edu	37	chr15	85401522	85401522	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggaggcaaccacacctgaaGaaagggagagccccacggtt	14	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	85401522	85401522	G	C	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.4159	p.E1387Q	0.186	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	22	0	0	14	7	33.33	-	-	-	C	85401522	G	C	85401522	3	2	240	1	0	0	0	0	1	0	0	0	546	943	33	2	4181	2	ALPK3	15	85401522	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1082	85401522	17129870	3176	22026										
ACAN	0	genome.wustl.edu	37	chr15	89402288	89402288	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagcactttgacatttcaaGaaggcgaggcgtccgctgcc	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	89402288	89402288	G	C	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	missense	c.6472	p.E2158Q	0.093	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	23	0	0	22	12	35.29	-	-	-	C	89402288	G	C	89402288	3	2	240	1	0	0	0	0	1	0	0	0	117	943	33	2	6514	2	ACAN	15	89402288	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4000766	89402288	13129104	3177	22027										
FANCI	0	genome.wustl.edu	37	chr15	89817505	89817505	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcatagatcttatgtttCaaccatgatcttggaagtag	7	8	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	89817505	89817505	C	T	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.1082	p.S361L	0.999	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	80	0	0	58	15	20.55	-	-	-	T	89817505	C	T	89817505	3	4	240	1	0	0	0	0	1	0	0	0	5715	838	29	2	1124	2	FANCI	15	89817505	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	415217	89817505	12713887	3178	22028										
KIF7	0	genome.wustl.edu	37	chr15	90177087	90177087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgacagtgacaccagccgctCcgtagcctgcttcttctcct	8	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	90177087	90177087	C	T	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.2422	p.E808K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	60	0	0	44	9	16.98	-	-	-	T	90177087	C	T	90177087	3	4	240	1	0	0	0	0	1	0	0	0	8361	864	30	2	1641	2	KIF7	15	90177087	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	359582	90177087	12354305	3179	22029										
PEX11A	0	genome.wustl.edu	37	chr15	90226631	90226631	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgggtcttcagcttcatctGaggatatgccacagtgatca	10	10	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	90226631	90226631	G	C	SNP	PEX11A	ENST00000300056	human	ensembl	69_37n	-1	known	missense	c.721	p.Q241E	0.534	NULL	pfam_PEX11	-	no_errors	PEX11A	HGNC	ENSG00000166821	55	0	0	40	20	33.33	-	-	-	C	90226631	G	C	90226631	3	2	240	1	0	0	0	0	1	0	0	0	11811	1299	45	2	26	2	PEX11A	15	90226631	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49544	90226631	12304761	3180	22030										
WDR93	0	genome.wustl.edu	37	chr15	90248831	90248831	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggaaggactttacctagtCaaagccatcaatgaagtggt	10	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	90248831	90248831	C	G	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	silent	c.543	p.V181	0.964	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	141	0	0	124	35	22.01	-	-	-	G	90248831	C	G	90248831	2	3	240	1	0	0	0	0	0	0	0	1	17437	813	29	2		2	WDR93	15	90248831	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22200	90248831	12282561	3181	22031										
WDR93	0	genome.wustl.edu	37	chr15	90281388	90281388	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcaaaaaattgtaccattCctcaaagggacttggataac	6	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	90281388	90281388	C	G	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	missense	c.1882	p.P628A	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	59	0	0	59	17	22.37	-	-	-	G	90281388	C	G	90281388	3	3	240	1	0	0	0	0	1	0	0	0	17437	855	30	2	1940	2	WDR93	15	90281388	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	32557	90281388	12250004	3182	22032										
SEMA4B	0	genome.wustl.edu	37	chr15	90760783	90760783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgggtgctcgagaggccctCtttgcactcagtagcaacct	12	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	90760783	90760783	C	G	SNP	SEMA4B	ENST00000559300	human	ensembl	69_37n	1	known	missense	c.38	p.S13C	1.000	NULL	NULL	-	no_errors	SEMA4B	HGNC	ENSG00000185033	53	0	0	50	16	24.24	-	-	-	G	90760783	C	G	90760783	3	3	240	1	0	0	0	0	1	0	0	0	14120	900	32	2	276	2	SEMA4B	15	90760783	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	479395	90760783	11770609	3183	22033										
IQGAP1	0	genome.wustl.edu	37	chr15	91026794	91026794	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccacttaagcatcattaatGaatatctttcccagtcctac	3	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	91026794	91026794	G	A	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	missense	c.3757	p.E1253K	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	76	0	0	57	17	22.97	-	-	-	A	91026794	G	A	91026794	3	1	240	1	0	0	0	0	1	0	0	0	7868	1291	45	2	3871	2	IQGAP1	15	91026794	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	266011	91026794	11504598	3184	22034										
BLM	0	genome.wustl.edu	37	chr15	91293048	91293048	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtaagagtaagcactgctCagaaatcaaaaaagggtaag	10	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	91293048	91293048	C	G	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.550	p.Q184E	1.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	63	0	0	48	17	26.15	-	-	-	G	91293048	C	G	91293048	3	3	240	1	0	0	0	0	1	0	0	0	1450	827	29	2	556	2	BLM	15	91293048	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	266254	91293048	11238344	3185	22035										
SLCO3A1	0	genome.wustl.edu	37	chr15	92647641	92647641	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtccctgcccccgcactCagagcccgccatggaaagcg	10	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	92647641	92647641	C	G	SNP	SLCO3A1	ENST00000318445	human	ensembl	69_37n	1	known	nonsense	c.878	p.S293*	0.999	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	141	0	0	96	23	19.17	-	-	-	G	92647641	C	G	92647641	4	3	240	1	0	0	0	0	0	1	0	0	14817	838	29	2	892	2	SLCO3A1	15	92647641	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1354593	92647641	9883751	3186	22036										
ST8SIA2	0	genome.wustl.edu	37	chr15	92988122	92988122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacgtcaacgtgcgcactGcatacccctcgctgcgcctg	9	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	92988122	92988122	G	A	SNP	ST8SIA2	ENST00000268164	human	ensembl	69_37n	1	known	missense	c.805	p.A269T	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557	11	0	0	18	7	28	-	-	-	A	92988122	G	A	92988122	3	1	240	1	0	0	0	0	1	0	0	0	15323	1319	46	4	823	4	ST8SIA2	15	92988122	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	340481	92988122	9543270	3187	22037										
CHD2	0	genome.wustl.edu	37	chr15	93552539	93552539	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactcagatcaggagcacatCaaactctggaggaggtaacc	10	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	93552539	93552539	C	T	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	silent	c.4578	p.I1526	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	38	0	0	29	10	25.64	-	-	-	T	93552539	C	T	93552539	2	4	240	1	0	0	0	0	0	0	0	1	3354	816	29	2		2	CHD2	15	93552539	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	564417	93552539	8978853	3188	22038										
CHD2	0	genome.wustl.edu	37	chr15	93567777	93567777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggggaatataaacagcctCtacccccattgcaccctgca	8	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	93567777	93567777	C	G	SNP	CHD2	ENST00000394196	human	ensembl	69_37n	1	novel	missense	c.5329	p.L1777V	0.994	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	117	0	0	84	33	28.21	-	-	-	G	93567777	C	G	93567777	3	3	240	1	0	0	0	0	1	0	0	0	3354	912	32	2	5483	2	CHD2	15	93567777	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15238	93567777	8963615	3189	22039										
RGMA	0	genome.wustl.edu	37	chr15	93616198	93616198	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggccagaatcccagggctGaacgtcctgcccctctcccc	9	19	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	93616198	93616198	G	C	SNP	RGMA	ENST00000329082	human	ensembl	69_37n	-1	known	nonsense	c.77	p.S26*	0.986	pfam_RGM_N	pfam_RGM_N,pfam_RGM_C	-	no_errors	RGMA	HGNC	ENSG00000182175	46	0	0	35	5	12.5	-	-	-	C	93616198	G	C	93616198	4	2	240	1	0	0	0	0	0	1	0	0	13363	1294	45	2	1287	2	RGMA	15	93616198	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48421	93616198	8915194	3190	22040										
IGF1R	0	genome.wustl.edu	37	chr15	99192865	99192865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctgtgggggctcctgtttCtctccgccgcgctctcgctc	12	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	99192865	99192865	C	G	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.55	p.L19V	0.985	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	27	0	0	16	6	27.27	-	-	-	G	99192865	C	G	99192865	3	3	240	1	0	0	0	0	1	0	0	0	7625	913	32	2	57	2	IGF1R	15	99192865	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5576667	99192865	3338527	3191	22041										
IGF1R	0	genome.wustl.edu	37	chr15	99465606	99465606	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagctgcaaccacgaggctGagaagctgggctgcagcgcc	14	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	99465606	99465606	G	C	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.2431	p.E811Q	0.995	pirsf_Tyr_kinase_insulin-like_rcpt,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	49	0	0	63	22	25.88	-	-	-	C	99465606	G	C	99465606	3	2	240	1	0	0	0	0	1	0	0	0	7625	1291	45	2	2473	2	IGF1R	15	99465606	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	272741	99465606	3065786	3192	22042										
LRRC28	0	genome.wustl.edu	37	chr15	99892629	99892629	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggataacaacattcacctGaaaggcttgccatcttatct	7	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	99892629	99892629	G	A	SNP	LRRC28	ENST00000301981	human	ensembl	69_37n	1	known	silent	c.648	p.L216	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	111	0	0	47	22	31.88	-	-	-	A	99892629	G	A	99892629	2	1	240	1	0	0	0	0	0	0	0	1	9048	1277	45	2		2	LRRC28	15	99892629	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	427023	99892629	2638763	3193	22043										
MEF2A	0	genome.wustl.edu	37	chr15	100211585	100211585	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatgctgacgattactttGagcacagtccactctcggag	10	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	100211585	100211585	G	C	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	missense	c.316	p.E106Q	1.000	pfam_HJURP_C	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	133	0	0	85	26	23.42	-	-	-	C	100211585	G	C	100211585	3	2	240	1	0	0	0	0	1	0	0	0	9526	1291	45	2	326	2	MEF2A	15	100211585	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	318956	100211585	2319807	3194	22044										
MEF2A	0	genome.wustl.edu	37	chr15	100250881	100250881	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgtcagcccttcaaggctTcaactcgccaggaatgctgt	9	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	100250881	100250881	T	C	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	missense	c.1055	p.F352S	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	58	0	0	27	31	53.45	-	-	-	C	100250881	T	C	100250881	3	2	240	1	0	0	0	0	1	0	0	0	9526	1783	62	5	1228	5	MEF2A	15	100250881	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	39296	100250881	2280511	3195	22045										
LYSMD4	0	genome.wustl.edu	37	chr15	100269517	100269517	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaaagtagaccaaataaaaGacaggcaagacaataccaat	6	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	100269517	100269517	G	C	SNP	LYSMD4	ENST00000344791	human	ensembl	69_37n	-1	known	silent	c.705	p.V235	0.960	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060	56	0	0	41	15	26.79	-	-	-	C	100269517	G	C	100269517	2	2	240	1	0	0	0	0	0	0	0	1	9194	929	33	2		2	LYSMD4	15	100269517	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18636	100269517	2261875	3196	22046										
ADAMTS17	0	genome.wustl.edu	37	chr15	100657086	100657086	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgtcagcaggcctttcttCttggggctcagccggtcgtg	14	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	100657086	100657086	C	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.1854	p.K618N	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	52	0	0	23	15	39.47	-	-	-	A	100657086	C	A	100657086	3	1	240	1	0	0	0	0	1	0	0	0	262	912	32	2	1473	2	ADAMTS17	15	100657086	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	387569	100657086	1874306	3197	22047										
ALDH1A3	0	genome.wustl.edu	37	chr15	101434160	101434160	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctgtgctctgtcgcagtGgaacttccccctgctgatgc	10	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	101434160	101434160	G	A	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	nonsense	c.539	p.W180*	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	42	0	0	32	16	33.33	-	-	-	A	101434160	G	A	101434160	4	1	240	1	0	0	0	0	0	1	0	0	492	1362	47	4	561	4	ALDH1A3	15	101434160	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	777074	101434160	1097232	3198	22048										
CHSY1	0	genome.wustl.edu	37	chr15	101718105	101718105	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctgtagtaaacacgaggtCgacgtcgcagaagaagagca	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	101718105	101718105	C	G	SNP	CHSY1	ENST00000254190	human	ensembl	69_37n	-1	known	missense	c.1897	p.D633H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873	36	0	0	32	6	15.79	-	-	-	G	101718105	C	G	101718105	3	3	240	1	0	0	0	0	1	0	0	0	3441	884	31	3	515	3	CHSY1	15	101718105	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	283945	101718105	813287	3199	22049										
TARSL2	0	genome.wustl.edu	37	chr15	102194799	102194799	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggacttcaaaaggcctcctCagcattgagtgtccgtgtct	10	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	102194799	102194799	C	T	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	missense	c.2395	p.E799K	1.000	superfamily_Anticodon-bd	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	142	0	0	95	28	22.76	-	-	-	T	102194799	C	T	102194799	3	4	240	1	0	0	0	0	1	0	0	0	15653	835	29	2	17	2	TARSL2	15	102194799	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	476694	102194799	336593	3200	22050										
TARSL2	0	genome.wustl.edu	37	chr15	102211921	102211921	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggttcattttccacggttCtccaaagtccatcaagctgt	8	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	102211921	102211921	C	T	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	missense	c.1819	p.E607K	1.000	pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	163	0	0	80	74	48.05	-	-	-	T	102211921	C	T	102211921	3	4	240	1	0	0	0	0	1	0	0	0	15653	922	32	2	613	2	TARSL2	15	102211921	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17122	102211921	319471	3201	22051										
TARSL2	0	genome.wustl.edu	37	chr15	102261472	102261472	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagagctgatggtctttcttCagtatttcaaaaagcttcaa	7	7	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	102261472	102261472	C	T	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	silent	c.423	p.L141	1.000	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	146	0	0	78	76	49.35	-	-	-	T	102261472	C	T	102261472	2	4	240	1	0	0	0	0	0	0	0	1	15653	813	29	2		2	TARSL2	15	102261472	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	49551	102261472	269920	3202	22052										
OR4F15	0	genome.wustl.edu	37	chr15	102358835	102358835	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atactttttagccacttcctCtatcattggccttatccact	3	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	15	102358835	102358835	C	G	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	1	known	missense	c.446	p.S149C	0.597	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	189	0	0	139	48	25.67	-	-	-	G	102358835	C	G	102358835	3	3	240	1	0	0	0	0	1	0	0	0	11134	913	32	2	448	2	OR4F15	15	102358835	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	97363	102358835	172557	3203	22053										
MPG	0	genome.wustl.edu	37	chr16	133185	133185	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccgcaaccgaggcatgttCatgaagccggggaccctgta	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	133185	133185	C	T	SNP	MPG	ENST00000219431	human	ensembl	69_37n	1	known	silent	c.450	p.F150	1.000	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	-	no_errors	MPG	HGNC	ENSG00000103152	46	0	0	32	13	28.89	-	-	-	T	133185	C	T	133185	2	4	240	1	0	0	0	0	0	0	0	1	9796	825	29	2		2	MPG	16	133185	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		133185	90221568	3204	22054										
AXIN1	0	genome.wustl.edu	37	chr16	343607	343607	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcatggtggggtcttggatGaagaggtgggagggctgcac	21	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	343607	343607	G	A	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	silent	c.2067	p.F689	1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	41	0	0	43	12	21.82	-	-	-	A	343607	G	A	343607	2	1	240	1	0	0	0	0	0	0	0	1	1240	1281	45	2		2	AXIN1	16	343607	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	210422	343607	90011146	3205	22055										
WDR90	0	genome.wustl.edu	37	chr16	709364	709364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtctgtgccaggcctcccGaaggtggcgatggtgagcag	17	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	709364	709364	G	A	SNP	WDR90	ENST00000549091	human	ensembl	69_37n	1	novel	missense	c.3172	p.E1058K	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	15	0	0	17	14	45.16	-	-	-	A	709364	G	A	709364	3	1	240	1	0	0	0	0	1	0	0	0	17434	1059	37	1	3274	1	WDR90	16	709364	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	365757	709364	89645389	3206	22056										
WDR90	0	genome.wustl.edu	37	chr16	715685	715685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggcttcccccaggtgaacGaggtggtcttcagccccggg	14	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	715685	715685	G	A	SNP	WDR90	ENST00000315764	human	ensembl	69_37n	1	known	missense	c.115	p.E39K	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	29	0	0	21	8	27.59	-	-	-	A	715685	G	A	715685	3	1	240	1	0	0	0	0	1	0	0	0	17434	1059	37	1	4456	1	WDR90	16	715685	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6321	715685	89639068	3207	22057										
STUB1	0	genome.wustl.edu	37	chr16	732065	732065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttttttctcaggtggatGagaagaggaaggtgagtgtg	16	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	732065	732065	G	A	SNP	STUB1	ENST00000219548	human	ensembl	69_37n	1	known	missense	c.658	p.E220K	1.000	NULL	pfam_Ubox_domain,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266	102	0	0	117	17	12.69	-	-	-	A	732065	G	A	732065	3	1	240	1	0	0	0	0	1	0	0	0	15426	1291	45	2	676	2	STUB1	16	732065	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16380	732065	89622688	3208	22058										
JMJD8	0	genome.wustl.edu	37	chr16	733406	733406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgaaagagagaggcccactCggtgaagttgttgtccccga	13	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	733406	733406	C	T	SNP	JMJD8	ENST00000293882	human	ensembl	69_37n	-1	known	missense	c.637	p.E213K	0.997	pfscan_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD8	HGNC	ENSG00000161999	47	0	0	52	9	14.75	-	-	-	T	733406	C	T	733406	3	4	240	1	0	0	0	0	1	0	0	0	8010	893	31	1	383	1	JMJD8	16	733406	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1341	733406	89621347	3209	22059										
WDR24	0	genome.wustl.edu	37	chr16	735944	735944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctcctttgctgcggtccaGccgcgtctcactgcccaacc	8	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	735944	735944	G	A	SNP	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	silent	c.1888	p.L630	0.990	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	29	0	0	36	10	21.74	-	-	-	A	735944	G	A	735944	2	1	240	1	0	0	0	0	0	0	0	1	17378	962	34	4		4	WDR24	16	735944	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2538	735944	89618809	3210	22060										
METRN	0	genome.wustl.edu	37	chr16	766959	766959	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcaggccctgcagcgacgctGagctgctcctggccgcatgc	14	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	766959	766959	G	C	SNP	METRN	ENST00000568223	human	ensembl	69_37n	1	known	missense	c.532	p.E178Q	0.962	NULL	NULL	-	no_errors	METRN	HGNC	ENSG00000103260	12	0	0	20	6	23.08	-	-	-	C	766959	G	C	766959	3	2	240	1	0	0	0	0	1	0	0	0	9559	1291	45	2	542	2	METRN	16	766959	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31015	766959	89587794	3211	22061										
CCDC78	0	genome.wustl.edu	37	chr16	775496	775496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccggggatgcctggggtCagactccactgggactgcac	15	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	775496	775496	C	G	SNP	CCDC78	ENST00000293889	human	ensembl	69_37n	-1	known	missense	c.352	p.D118H	0.000	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004	52	0	0	41	13	24.07	-	-	-	G	775496	C	G	775496	3	3	240	1	0	0	0	0	1	0	0	0	2879	826	29	2	1008	2	CCDC78	16	775496	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8537	775496	89579257	3212	22062										
TPSB2	0	genome.wustl.edu	37	chr16	1279626	1279626	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggatgagggagcccccgcaGaagtgcatccagtatcggtc	14	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1279626	1279626	G	A	SNP	TPSB2	ENST00000430512	human	ensembl	69_37n	-1	known	silent	c.174	p.F58	0.907	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSB2	HGNC	ENSG00000197253	49	0	0	65	9	12.16	-	-	-	A	1279626	G	A	1279626	2	1	240	1	0	0	0	0	0	0	0	1	16520	933	33	2		2	TPSB2	16	1279626	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	504130	1279626	89075127	3213	22063										
BAIAP3	0	genome.wustl.edu	37	chr16	1395996	1395996	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctcctcaggacgtgtgtGaggccaccctcttctatacg	9	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1395996	1395996	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	missense	c.2323	p.E775K	0.239	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	22	0	0	22	6	21.43	-	-	-	A	1395996	G	A	1395996	3	1	240	1	0	0	0	0	1	0	0	0	1308	1291	45	2	2417	2	BAIAP3	16	1395996	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	116370	1395996	88958757	3214	22064										
C16orf91	0	genome.wustl.edu	37	chr16	1470078	1470078	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtttccgatctgctgaGattctgctccgccttcacgc	9	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1470078	1470078	G	C	SNP	C16orf91	ENST00000310355	human	ensembl	69_37n	-1	known	missense	c.937	p.L313V	0.000	NULL	prints_CCSMST1	-	no_errors	C16orf91	HGNC	ENSG00000174109	40	0	0	81	18	18	-	-	-	C	1470078	G	C	1470078	3	2	240	1	0	0	0	0	1	0	0	0	1857	942	33	2	135	2	C16orf91	16	1470078	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	74082	1470078	88884675	3215	22065										
CLCN7	0	genome.wustl.edu	37	chr16	1505783	1505783	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacgcaccctcctccaagctGaacaggaccccacctggaag	9	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1505783	1505783	G	C	SNP	CLCN7	ENST00000382745	human	ensembl	69_37n	-1	known	missense	c.930	p.F310L	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	31	0	0	38	7	15.56	-	-	-	C	1505783	G	C	1505783	3	2	240	1	0	0	0	0	1	0	0	0	3498	1281	45	2	1547	2	CLCN7	16	1505783	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	35705	1505783	88848970	3216	22066										
TELO2	0	genome.wustl.edu	37	chr16	1547069	1547069	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccgtgtccttcgtgtctCaggtccttgggaaagcctgt	11	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1547069	1547069	C	T	SNP	TELO2	ENST00000262319	human	ensembl	69_37n	1	known	nonsense	c.646	p.Q216*	0.999	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	68	0	0	103	19	15.57	-	-	-	T	1547069	C	T	1547069	4	4	240	1	0	0	0	0	0	1	0	0	15852	827	29	2	656	2	TELO2	16	1547069	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41286	1547069	88807684	3217	22067										
TELO2	0	genome.wustl.edu	37	chr16	1557647	1557647	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgtctcctccgtcctgctCagcctgcctgctgcgcgcct	10	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1557647	1557647	C	T	SNP	TELO2	ENST00000262319	human	ensembl	69_37n	1	known	silent	c.2337	p.L779	0.992	superfamily_ARM-type_fold	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	30	0	0	54	9	14.29	-	-	-	T	1557647	C	T	1557647	2	4	240	1	0	0	0	0	0	0	0	1	15852	813	29	2		2	TELO2	16	1557647	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10578	1557647	88797106	3218	22068										
TMEM204	0	genome.wustl.edu	37	chr16	1584286	1584286	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcgtcagcgatgaccgtgCagagactcgtggccgcggcc	16	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1584286	1584286	C	T	SNP	TMEM204	ENST00000253934	human	ensembl	69_37n	1	known	nonsense	c.10	p.Q4*	1.000	NULL	NULL	-	no_errors	TMEM204	HGNC	ENSG00000131634	14	0	0	12	9	42.86	-	-	-	T	1584286	C	T	1584286	4	4	240	1	0	0	0	0	0	1	0	0	16224	711	25	4	12	4	TMEM204	16	1584286	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26639	1584286	88770467	3219	22069										
IFT140	0	genome.wustl.edu	37	chr16	1639617	1639617	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccactcaccttcatcacttCttctgctttgccctcaggag	5	17	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1639617	1639617	C	T	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.799	p.E267K	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	28	0	0	67	11	14.1	-	-	-	T	1639617	C	T	1639617	3	4	240	1	0	0	0	0	1	0	0	0	7610	922	32	2	3689	2	IFT140	16	1639617	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	55331	1639617	88715136	3220	22070										
CRAMP1L	0	genome.wustl.edu	37	chr16	1702563	1702563	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatgtgccgggccctgaaGaagctgtgcgatccagatgg	14	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1702563	1702563	G	C	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.894	p.K298N	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	32	0	0	78	10	11.36	-	-	-	C	1702563	G	C	1702563	3	2	240	1	0	0	0	0	1	0	0	0	3876	933	33	2	916	2	CRAMP1L	16	1702563	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62946	1702563	88652190	3221	22071										
CRAMP1L	0	genome.wustl.edu	37	chr16	1703056	1703056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgagtgatgaagaggaccaGaagccagtgcgcctgcctct	13	10	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1703056	1703056	G	C	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.936	p.Q312H	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	38	0	0	39	7	14.58	-	-	-	C	1703056	G	C	1703056	3	2	240	1	0	0	0	0	1	0	0	0	3876	933	33	2	962	2	CRAMP1L	16	1703056	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	493	1703056	88651697	3222	22072										
CRAMP1L	0	genome.wustl.edu	37	chr16	1723944	1723944	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgattacatttctcggttCaatgacctggcccaagagct	8	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1723944	1723944	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	silent	c.3708	p.F1236	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	70	0	0	77	42	35.29	-	-	-	T	1723944	C	T	1723944	2	4	240	1	0	0	0	0	0	0	0	1	3876	825	29	2		2	CRAMP1L	16	1723944	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20888	1723944	88630809	3223	22073										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1756392	1756392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtggtggtgtaccaggacGactactgctccggctcggtg	16	11	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1756392	1756392	G	A	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.52	p.D18N	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	21	0	0	27	7	20.59	-	-	-	A	1756392	G	A	1756392	3	1	240	1	0	0	0	0	1	0	0	0	9357	1058	37	1	54	1	MAPK8IP3	16	1756392	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	32448	1756392	88598361	3224	22074										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1756461	1756461	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctccatctaccgcgagttcGagcgcctcatccactgctac	8	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1756461	1756461	G	C	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.121	p.E41Q	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	39	0	0	39	6	13.33	-	-	-	C	1756461	G	C	1756461	3	2	240	1	0	0	0	0	1	0	0	0	9357	1059	37	3	123	3	MAPK8IP3	16	1756461	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	69	1756461	88598292	3225	22075										
MRPS34	0	genome.wustl.edu	37	chr16	1822500	1822500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttcgatctcccgcgcctCgctctcagtcttccctgatg	9	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	1822500	1822500	C	T	SNP	MRPS34	ENST00000397375	human	ensembl	69_37n	-1	known	missense	c.379	p.E127K	0.385	NULL	NULL	-	no_errors	MRPS34	HGNC	ENSG00000074071	38	0	0	68	17	20	-	-	-	T	1822500	C	T	1822500	3	4	240	1	0	0	0	0	1	0	0	0	9915	893	31	1	281	1	MRPS34	16	1822500	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66039	1822500	88532253	3226	22076										
RPL3L	0	genome.wustl.edu	37	chr16	2002910	2002910	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcgccggcactcatcactGaggtgttctgcaaagatggt	13	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2002910	2002910	G	A	SNP	RPL3L	ENST00000268661	human	ensembl	69_37n	-1	known	silent	c.330	p.L110	0.986	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	26	0	0	39	9	18.75	-	-	-	A	2002910	G	A	2002910	2	1	240	1	0	0	0	0	0	0	0	1	13680	1277	45	2		2	RPL3L	16	2002910	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	180410	2002910	88351843	3227	22077										
TSC2	0	genome.wustl.edu	37	chr16	2135232	2135232	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggctctgtgtgccacagtCacagtcctttgagcggtcgg	14	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2135232	2135232	C	T	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	missense	c.4571	p.S1524L	0.562	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	43	0	0	55	10	15.38	-	-	-	T	2135232	C	T	2135232	3	4	240	1	0	0	0	0	1	0	0	0	16702	840	29	2	4709	2	TSC2	16	2135232	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	132322	2135232	88219521	3228	22078										
PKD1	0	genome.wustl.edu	37	chr16	2152430	2152430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcacgaagaggctggcgccGaaggcggtgaggtggcgggt	22	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2152430	2152430	G	A	SNP	PKD1	ENST00000567946	human	ensembl	69_37n	-1	novel	missense	c.755	p.S252L	0.922	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_LipOase_LH2,pfam_GPS_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1	HGNC	ENSG00000008710	15	0	0	24	8	24.24	-	-	-	A	2152430	G	A	2152430	3	1	240	1	0	0	0	0	1	0	0	0	12037	1049	37	1	3846	1	PKD1	16	2152430	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17198	2152430	88202323	3229	22079										
ABCA3	0	genome.wustl.edu	37	chr16	2331100	2331100	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaggctctcctccccggtCagcattttgaaagtcgtggt	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2331100	2331100	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	silent	c.4287	p.L1429	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	88	0	0	127	30	19.11	-	-	-	T	2331100	C	T	2331100	2	4	240	1	0	0	0	0	0	0	0	1	33	813	29	2		2	ABCA3	16	2331100	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	178670	2331100	88023653	3230	22080										
ABCA3	0	genome.wustl.edu	37	chr16	2335471	2335471	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagactggggatgaggaagGagatgaggtcccacagcaga	17	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2335471	2335471	G	C	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.3455	p.S1152C	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	26	0	0	63	24	27.59	-	-	-	C	2335471	G	C	2335471	3	2	240	1	0	0	0	0	1	0	0	0	33	1174	41	2	1703	2	ABCA3	16	2335471	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4371	2335471	88019282	3231	22081										
ABCA3	0	genome.wustl.edu	37	chr16	2336768	2336768	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagaccacaatggaggcgtGaggcccgcacagcagcttga	15	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2336768	2336768	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.3205	p.H1069Y	0.032	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	43	0	0	77	15	16.3	-	-	-	A	2336768	G	A	2336768	3	1	240	1	0	0	0	0	1	0	0	0	33	1290	45	2	1957	2	ABCA3	16	2336768	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1297	2336768	88017985	3232	22082										
ATP6V0C	0	genome.wustl.edu	37	chr16	2569734	2569734	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcgtcgccctcatcctCtccacaaagtagaccctctc	4	19	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2569734	2569734	C	G	SNP	ATP6V0C	ENST00000330398	human	ensembl	69_37n	1	known	silent	c.456	p.L152	0.983	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_V0-cplx_csu	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_V0-cplx_csu,tigrfam_ATPase_V0-cplx_csu_euk	-	no_errors	ATP6V0C	HGNC	ENSG00000185883	50	0	0	43	10	18.87	-	-	-	G	2569734	C	G	2569734	2	3	240	1	0	0	0	0	0	0	0	1	1176	900	32	2		2	ATP6V0C	16	2569734	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	232966	2569734	87785019	3233	22083										
AMDHD2	0	genome.wustl.edu	37	chr16	2580357	2580357	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattagtgtcatcctgccatCttctgtgtccccttggccct	7	15	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2580357	2580357	C	A	SNP	AMDHD2	ENST00000413459	human	ensembl	69_37n	1	known	missense	c.1382	p.S461Y	0.000	NULL	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	56	0	0	64	18	21.95	-	-	-	A	2580357	C	A	2580357	3	1	240	1	0	0	0	0	1	0	0	0	568	913	32	2	1462	2	AMDHD2	16	2580357	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10623	2580357	87774396	3234	22084										
PDPK1	0	genome.wustl.edu	37	chr16	2636865	2636865	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagatgagaagaggttgttGttggagaagcaggctggcgg	19	3	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2636865	2636865	G	A	SNP	PDPK1	ENST00000342085	human	ensembl	69_37n	1	known	silent	c.1314	p.L438	0.098	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PDPK1	HGNC	ENSG00000140992	71	0	0	108	20	15.62	-	-	-	A	2636865	G	A	2636865	2	1	240	1	0	0	0	0	0	0	0	1	11760	1368	48	4		4	PDPK1	16	2636865	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	56508	2636865	87717888	3235	22085										
SRRM2	0	genome.wustl.edu	37	chr16	2812220	2812220	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcgagggaggtcccactCtagatccccagccactaggg	13	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2812220	2812220	C	G	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.1691	p.S564C	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	36	0	0	39	6	13.33	-	-	-	G	2812220	C	G	2812220	3	3	240	1	0	0	0	0	1	0	0	0	15260	913	32	2	1729	2	SRRM2	16	2812220	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175355	2812220	87542533	3236	22086										
SRRM2	0	genome.wustl.edu	37	chr16	2814642	2814642	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagatccatctctagacatGaaagaacaatcgacaagatc	6	10	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2814642	2814642	G	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.4113	p.M1371I	0.936	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	30	0	0	34	8	19.05	-	-	-	C	2814642	G	C	2814642	3	2	240	1	0	0	0	0	1	0	0	0	15260	1290	45	2	4151	2	SRRM2	16	2814642	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2422	2814642	87540111	3237	22087										
SRRM2	0	genome.wustl.edu	37	chr16	2815463	2815463	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggttcatcaagcaaaggcaGaggcccttctcctgaaggaa	11	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2815463	2815463	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.4934	p.R1645K	0.976	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	63	0	0	60	12	16.44	-	-	-	A	2815463	G	A	2815463	3	1	240	1	0	0	0	0	1	0	0	0	15260	942	33	2	4972	2	SRRM2	16	2815463	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	821	2815463	87539290	3238	22088										
PRSS21	0	genome.wustl.edu	37	chr16	2868967	2868967	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggtacatcaaagaggatGagggtgaggctggggacagg	21	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2868967	2868967	G	A	SNP	PRSS21	ENST00000005995	human	ensembl	69_37n	1	known	missense	c.547	p.E183K	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS21	HGNC	ENSG00000007038	69	0	0	108	28	20.59	-	-	-	A	2868967	G	A	2868967	3	1	240	1	0	0	0	0	1	0	0	0	12698	1291	45	2	561	2	PRSS21	16	2868967	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	53504	2868967	87485786	3239	22089										
FLYWCH1	0	genome.wustl.edu	37	chr16	2988357	2988357	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataacccagggccaccgcatCatggtcatgcgcagccactg	10	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	2988357	2988357	C	T	SNP	FLYWCH1	ENST00000573564	human	ensembl	69_37n	1	putative	missense	c.1238	p.S413L	0.628	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FLYWCH1	HGNC	ENSG00000059122	23	0	0	21	6	22.22	-	-	-	T	2988357	C	T	2988357	3	4	240	1	0	0	0	0	1	0	0	0	5993	816	29	2	1969	2	FLYWCH1	16	2988357	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	119390	2988357	87366396	3240	22090										
CLDN6	0	genome.wustl.edu	37	chr16	3065666	3065666	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaagacaatcccagaggtGagcaccaggcgggccttgga	13	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3065666	3065666	G	A	SNP	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	silent	c.357	p.L119	0.006	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	16	0	0	24	7	22.58	-	-	-	A	3065666	G	A	3065666	2	1	240	1	0	0	0	0	0	0	0	1	3519	1277	45	2		2	CLDN6	16	3065666	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77309	3065666	87289087	3241	22091										
HCFC1R1	0	genome.wustl.edu	37	chr16	3073236	3073236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagtggaggaacctacctGagtgggggcagggctgggga	20	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3073236	3073236	G	C	SNP	HCFC1R1	ENST00000576321	human	ensembl	69_37n	-1	putative	missense	c.259	p.Q87E	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HCFC1R1	HGNC	ENSG00000103145	28	0	0	47	10	17.54	-	-	-	C	3073236	G	C	3073236	3	2	240	1	0	0	0	0	1	0	0	0	7043	1277	45	2	145	2	HCFC1R1	16	3073236	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7570	3073236	87281517	3242	22092										
HCFC1R1	0	genome.wustl.edu	37	chr16	3073917	3073917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcccctccctgggggcctCgctgcaagggctgctgcagg	17	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3073917	3073917	C	T	SNP	HCFC1R1	ENST00000248089	human	ensembl	69_37n	-1	known	missense	c.26	p.R9Q	0.820	NULL	NULL	-	no_errors	HCFC1R1	HGNC	ENSG00000103145	25	0	0	32	12	27.27	-	-	-	T	3073917	C	T	3073917	3	4	240	1	0	0	0	0	1	0	0	0	7043	884	31	1	406	1	HCFC1R1	16	3073917	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	681	3073917	87280836	3243	22093										
MMP25	0	genome.wustl.edu	37	chr16	3108209	3108209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttctggcgcctccagccctCcggacagctggtgtccccgc	12	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3108209	3108209	C	T	SNP	MMP25	ENST00000336577	human	ensembl	69_37n	1	known	missense	c.1034	p.S345F	0.901	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	31	0	0	32	8	20	-	-	-	T	3108209	C	T	3108209	3	4	240	1	0	0	0	0	1	0	0	0	9734	855	30	2	1064	2	MMP25	16	3108209	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34292	3108209	87246544	3244	22094										
ZNF200	0	genome.wustl.edu	37	chr16	3274081	3274081	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctggacacttaaatatcttCtcccttatatggattccttc	4	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3274081	3274081	C	T	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	silent	c.999	p.E333	0.962	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	85	0	0	129	32	19.88	-	-	-	T	3274081	C	T	3274081	2	4	240	1	0	0	0	0	0	0	0	1	17858	912	32	2		2	ZNF200	16	3274081	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165872	3274081	87080672	3245	22095										
ZNF200	0	genome.wustl.edu	37	chr16	3274435	3274435	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggtaactaacagatttctCattttccttttttgtggaat	6	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3274435	3274435	C	A	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	missense	c.645	p.M215I	0.634	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	141	0	0	152	27	15.08	-	-	-	A	3274435	C	A	3274435	3	1	240	1	0	0	0	0	1	0	0	0	17858	826	29	2	546	2	ZNF200	16	3274435	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	354	3274435	87080318	3246	22096										
ZNF200	0	genome.wustl.edu	37	chr16	3274506	3274506	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgggaggctgctgagagaCcaaggaagaatccatttcat	12	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3274506	3274506	C	A	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	missense	c.574	p.V192F	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	139	0	0	146	35	19.23	-	-	-	A	3274506	C	A	3274506	3	1	240	1	0	0	0	0	1	0	0	0	17858	507	18	4	617	4	ZNF200	16	3274506	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71	3274506	87080247	3247	22097										
ZNF263	0	genome.wustl.edu	37	chr16	3339442	3339442	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttccgtctgtatgctctgaGaacatccaccctcaggtgct	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3339442	3339442	G	A	SNP	ZNF263	ENST00000574253	human	ensembl	69_37n	1	putative	missense	c.437	p.R146K	0.000	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	27	0	0	18	8	30.77	-	-	-	A	3339442	G	A	3339442	3	1	240	1	0	0	0	0	1	0	0	0	17899	933	33	2	958	2	ZNF263	16	3339442	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	64936	3339442	87015311	3248	22098										
NLRC3	0	genome.wustl.edu	37	chr16	3591874	3591874	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtcttgatggcctctgagAtcatcctggccccggagtcc	11	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3591874	3591874	A	G	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	missense	c.3287	p.I1096T	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	74	0	0	58	47	44.76	-	-	-	G	3591874	A	G	3591874	3	3	240	1	0	0	0	0	1	0	0	0	10540	333	12	5	52	5	NLRC3	16	3591874	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	252432	3591874	86762879	3249	22099										
NLRC3	0	genome.wustl.edu	37	chr16	3602207	3602207	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtctcacatgagctctttCagactcctgttctgcttcaa	6	12	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3602207	3602207	C	T	SNP	NLRC3	ENST00000574758	human	ensembl	69_37n	-1	known	missense	c.2482	p.E828K	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC3	HGNC	ENSG00000167984	106	0	0	61	26	29.89	-	-	-	T	3602207	C	T	3602207	3	4	240	1	0	0	0	0	1	0	0	0	10540	835	29	2	901	2	NLRC3	16	3602207	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10333	3602207	86752546	3250	22100										
TRAP1	0	genome.wustl.edu	37	chr16	3721737	3721737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcacctgatgagtgcgctCtcctgcagcagctcccggct	11	16	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	3721737	3721737	C	G	SNP	TRAP1	ENST00000246957	human	ensembl	69_37n	-1	known	missense	c.1221	p.E407D	0.997	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602	41	0	0	17	15	46.88	-	-	-	G	3721737	C	G	3721737	3	3	240	1	0	0	0	0	1	0	0	0	16551	912	32	2	925	2	TRAP1	16	3721737	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	119530	3721737	86633016	3251	22101										
ADCY9	0	genome.wustl.edu	37	chr16	4015828	4015828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttcgttggcttcttctattCctgtttcgtcacagtcgtct	8	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4015828	4015828	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.4010	p.G1337E	0.044	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	160	0	0	124	31	20	-	-	-	T	4015828	C	T	4015828	3	4	240	1	0	0	0	0	1	0	0	0	301	855	30	2	55	2	ADCY9	16	4015828	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	294091	4015828	86338925	3252	22102										
ADCY9	0	genome.wustl.edu	37	chr16	4016694	4016694	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatggttcttggagtaggtCtgggacaccttcagctgctc	12	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4016694	4016694	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	silent	c.3144	p.Q1048	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	58	0	0	62	14	18.42	-	-	-	T	4016694	C	T	4016694	2	4	240	1	0	0	0	0	0	0	0	1	301	912	32	2		2	ADCY9	16	4016694	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	866	4016694	86338059	3253	22103										
ADCY9	0	genome.wustl.edu	37	chr16	4024709	4024709	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggggcgaagttaatacaGaactgaaattaaaatgcaga	10	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4024709	4024709	G	C	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.2831	p.S944C	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	76	0	0	55	15	21.43	-	-	-	C	4024709	G	C	4024709	3	2	240	1	0	0	0	0	1	0	0	0	301	942	33	2	1238	2	ADCY9	16	4024709	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8015	4024709	86330044	3254	22104										
GLIS2	0	genome.wustl.edu	37	chr16	4385105	4385105	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagacctggtggaccatgtCaacgattaccatgtcaagcc	9	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4385105	4385105	C	G	SNP	GLIS2	ENST00000262366	human	ensembl	69_37n	1	known	silent	c.567	p.V189	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS2	HGNC	ENSG00000126603	46	0	0	39	17	30.36	-	-	-	G	4385105	C	G	4385105	2	3	240	1	0	0	0	0	0	0	0	1	6498	813	29	2		2	GLIS2	16	4385105	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	360396	4385105	85969648	3255	22105										
CORO7	0	genome.wustl.edu	37	chr16	4412094	4412094	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggtgaggttgagccccttGaggttggtgatgtggctgtc	18	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4412094	4412094	G	C	SNP	CORO7	ENST00000576437	human	ensembl	69_37n	-1	known	nonsense	c.155	p.S52*	1.000	NULL	NULL	-	no_errors	CORO7	Clone_based_vega_gene	ENSG00000262246	60	0	0	43	15	25.86	-	-	-	C	4412094	G	C	4412094	4	2	240	1	0	0	0	0	0	1	0	0	3789	1277	45	2	1359	2	CORO7	16	4412094	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26989	4412094	85942659	3256	22106										
GLYR1	0	genome.wustl.edu	37	chr16	4873824	4873824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaggagagctccttacctCgcttgcggttggctgccatt	12	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	4873824	4873824	C	T	SNP	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	missense	c.622	p.E208K	0.997	NULL	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	32	0	0	17	14	45.16	-	-	-	T	4873824	C	T	4873824	3	4	240	1	0	0	0	0	1	0	0	0	6535	893	31	1	1083	1	GLYR1	16	4873824	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	461730	4873824	85480929	3257	22107										
NAGPA	0	genome.wustl.edu	37	chr16	5077330	5077330	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcacagggacaatggtgctCacacttacaaggcctctggc	11	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	5077330	5077330	C	T	SNP	NAGPA	ENST00000312251	human	ensembl	69_37n	-1	known	missense	c.1225	p.E409K	1.000	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174	26	0	0	38	11	22.45	-	-	-	T	5077330	C	T	5077330	3	4	240	1	0	0	0	0	1	0	0	0	10216	835	29	2	334	2	NAGPA	16	5077330	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	203506	5077330	85277423	3258	22108										
C16orf89	0	genome.wustl.edu	37	chr16	5105257	5105257	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcagctcaccaggctccccGaagcatccttcctgctgttt	8	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	5105257	5105257	G	A	SNP	C16orf89	ENST00000350219	human	ensembl	69_37n	-1	known	silent	c.972	p.F324	0.846	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446	25	0	0	23	8	25.81	-	-	-	A	5105257	G	A	5105257	2	1	240	1	0	0	0	0	0	0	0	1	1855	1049	37	1		1	C16orf89	16	5105257	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27927	5105257	85249496	3259	22109										
C16orf89	0	genome.wustl.edu	37	chr16	5108498	5108498	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccctgggcactcaccattCtggcccagaggaagaagagc	11	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	5108498	5108498	C	T	SNP	C16orf89	ENST00000350219	human	ensembl	69_37n	-1	known	missense	c.737	p.R246K	0.802	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446	34	0	0	31	8	20.51	-	-	-	T	5108498	C	T	5108498	3	4	240	1	0	0	0	0	1	0	0	0	1855	913	32	2	740	2	C16orf89	16	5108498	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3241	5108498	85246255	3260	22110										
ABAT	0	genome.wustl.edu	37	chr16	8839861	8839861	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctttgtttactgcaggatCcagacacattagtcaagctg	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	8839861	8839861	C	G	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	missense	c.74	p.S25C	0.305	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	59	0	0	44	20	31.25	-	-	-	G	8839861	C	G	8839861	3	3	240	1	0	0	0	0	1	0	0	0	27	855	30	2	80	2	ABAT	16	8839861	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3731363	8839861	81514892	3261	22111										
ABAT	0	genome.wustl.edu	37	chr16	8841992	8841992	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaacagctgaatataattCaggtaagtgaggaggaggta	13	3	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	8841992	8841992	C	T	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	nonsense	c.196	p.Q66*	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	167	0	0	85	42	33.07	-	-	-	T	8841992	C	T	8841992	4	4	240	1	0	0	0	0	0	1	0	0	27	827	29	2	206	2	ABAT	16	8841992	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2131	8841992	81512761	3262	22112										
USP7	0	genome.wustl.edu	37	chr16	9002246	9002246	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgagggtcatacataaatCtcatcagttgtagatgtaac	8	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	9002246	9002246	C	T	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	missense	c.1223	p.R408K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	136	0	0	123	21	14.58	-	-	-	T	9002246	C	T	9002246	3	4	240	1	0	0	0	0	1	0	0	0	17185	913	32	2	2165	2	USP7	16	9002246	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	160254	9002246	81352507	3263	22113										
C16orf72	0	genome.wustl.edu	37	chr16	9210739	9210739	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgatgtcattacagactcAccaacccataaacgcaacag	7	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	9210739	9210739	A	C	SNP	C16orf72	ENST00000327827	human	ensembl	69_37n	1	known	silent	c.798	p.S266	1.000	NULL	NULL	-	no_errors	C16orf72	HGNC	ENSG00000182831	35	0	0	28	14	33.33	-	-	-	C	9210739	A	C	9210739	2	2	240	1	0	0	0	0	0	0	0	1	1844	146	6	5		5	C16orf72	16	9210739	Silent	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	208493	9210739	81144014	3264	22114										
GRIN2A	0	genome.wustl.edu	37	chr16	9858040	9858040	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaggctccttctcaccatCtatagtgtagatcttgtctc	6	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	9858040	9858040	C	G	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.3361	p.D1121H	0.995	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	52	0	0	29	34	53.97	-	-	-	G	9858040	C	G	9858040	3	3	240	1	0	0	0	0	1	0	0	0	6830	913	32	2	1037	2	GRIN2A	16	9858040	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	647301	9858040	80496713	3265	22115										
ZC3H7A	0	genome.wustl.edu	37	chr16	11846602	11846602	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcggtgtggaaaaccttCtctttgtgcttctcggagga	11	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	11846602	11846602	C	T	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	silent	c.2649	p.E883	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	103	0	0	82	23	21.9	-	-	-	T	11846602	C	T	11846602	2	4	240	1	0	0	0	0	0	0	0	1	17668	912	32	2		2	ZC3H7A	16	11846602	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1988562	11846602	78508151	3266	22116										
NOMO1	0	genome.wustl.edu	37	chr16	14935257	14935257	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgagcctcccctagggtgGagttttggtaagttaactga	12	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	14935257	14935257	G	A	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	nonsense	c.294	p.W98*	1.000	superfamily_Collagen-bd_Cna_B-typ_dom	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	26	0	0	23	11	32.35	-	-	-	A	14935257	G	A	14935257	4	1	240	1	0	0	0	0	0	1	0	0	10603	1183	41	2	304	2	NOMO1	16	14935257	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3088655	14935257	75419496	3267	22117										
NOMO1	0	genome.wustl.edu	37	chr16	14951376	14951376	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacagttaaaacaaaagctGatggctcattccgccttgag	8	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	14951376	14951376	G	C	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.1084	p.D362H	0.999	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	93	0	0	114	33	22.45	-	-	-	C	14951376	G	C	14951376	3	2	240	1	0	0	0	0	1	0	0	0	10603	1290	45	2	1126	2	NOMO1	16	14951376	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16119	14951376	75403377	3268	22118										
NOMO1	0	genome.wustl.edu	37	chr16	14978319	14978319	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatgtgatcacttcctctGaataccttcctacattatgg	6	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	14978319	14978319	G	C	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.3202	p.E1068Q	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	152	0	0	118	45	27.61	-	-	-	C	14978319	G	C	14978319	3	2	240	1	0	0	0	0	1	0	0	0	10603	1291	45	2	3308	2	NOMO1	16	14978319	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26943	14978319	75376434	3269	22119										
RRN3	0	genome.wustl.edu	37	chr16	15159159	15159159	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtctcctccagcggtactCctaatgactggcagcatctg	10	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	15159159	15159159	C	G	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	missense	c.1623	p.R541S	0.133	pfam_RNA_pol_I_trans_ini_fac_RRN3	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	75	0	0	69	25	26.6	-	-	-	G	15159159	C	G	15159159	3	3	240	1	0	0	0	0	1	0	0	0	13770	854	30	2	344	2	RRN3	16	15159159	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	180840	15159159	75195594	3270	22120										
KIAA0430	0	genome.wustl.edu	37	chr16	15705471	15705471	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgataagcctgtgagaattCtctcacaatgacctgtttgc	9	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	15705471	15705471	C	G	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.3595	p.E1199Q	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	87	0	0	73	15	17.05	-	-	-	G	15705471	C	G	15705471	3	3	240	1	0	0	0	0	1	0	0	0	8229	922	32	2	1673	2	KIAA0430	16	15705471	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	546312	15705471	74649282	3271	22121										
ABCC6	0	genome.wustl.edu	37	chr16	16284023	16284023	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agactagagtgacgtcaccaGaaatgtagacacttggaagg	12	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	16284023	16284023	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	silent	c.1633	p.L545	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	40	0	0	36	20	35.71	-	-	-	A	16284023	G	A	16284023	2	1	240	1	0	0	0	0	0	0	0	1	57	933	33	2		2	ABCC6	16	16284023	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	578552	16284023	74070730	3272	22122										
ABCC6	0	genome.wustl.edu	37	chr16	16315481	16315481	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccccgaacattgcctggttCcaggctcccagggatggcag	12	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	16315481	16315481	C	A	SNP	ABCC6	ENST00000575728	human	ensembl	69_37n	-1	putative	nonsense	c.244	p.E82*	0.040	NULL	NULL	-	no_errors	ABCC6	HGNC	ENSG00000091262	63	0	0	43	12	21.82	-	-	-	A	16315481	C	A	16315481	4	1	240	1	0	0	0	0	0	1	0	0	57	864	30	2	4468	2	ABCC6	16	16315481	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31458	16315481	74039272	3273	22123										
NOMO2	0	genome.wustl.edu	37	chr16	18553950	18553950	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacttggcaaggaatagaaaGagaacgagccatcttctctg	10	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	18553950	18553950	G	A	SNP	NOMO2	ENST00000381474	human	ensembl	69_37n	-1	known	missense	c.839	p.S280F	1.000	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	25	0	0	18	6	25	-	-	-	A	18553950	G	A	18553950	3	1	240	1	0	0	0	0	1	0	0	0	10604	942	33	2	3068	2	NOMO2	16	18553950	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2238469	18553950	71800803	3274	22124										
SMG1	0	genome.wustl.edu	37	chr16	18823420	18823420	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgacatgacatcaggctGagtcttctggccagtgttac	11	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	18823420	18823420	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.10654	p.Q3552E	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	114	0	0	88	30	25.42	-	-	-	C	18823420	G	C	18823420	3	2	240	1	0	0	0	0	1	0	0	0	14884	1299	45	2	346	2	SMG1	16	18823420	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	269470	18823420	71531333	3275	22125										
SMG1	0	genome.wustl.edu	37	chr16	18845567	18845567	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attggctaagtgaactgtctCagacgcttccatggggttcg	12	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	18845567	18845567	C	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.8524	p.E2842K	0.995	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	90	0	0	29	35	54.69	-	-	-	T	18845567	C	T	18845567	3	4	240	1	0	0	0	0	1	0	0	0	14884	835	29	2	2517	2	SMG1	16	18845567	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22147	18845567	71509186	3276	22126										
SMG1	0	genome.wustl.edu	37	chr16	18887491	18887491	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaattgtagtcagggcactGaggtcaaatataactacaaa	8	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	18887491	18887491	G	T	SNP	SMG1	ENST00000561947	human	ensembl	69_37n	-1	novel	missense	c.1597	p.Q533K	1.000	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMG1	HGNC	ENSG00000157106	99	0	0	79	35	30.7	-	-	-	T	18887491	G	T	18887491	3	4	240	1	0	0	0	0	1	0	0	0	14884	1277	45	2	9344	2	SMG1	16	18887491	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41924	18887491	71467262	3277	22127										
TMC7	0	genome.wustl.edu	37	chr16	19056734	19056734	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatcatcatcttggctgtGacactcttcgtggattttcc	7	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	19056734	19056734	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	silent	c.1527	p.V509	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	60	0	0	80	21	20.79	-	-	-	A	19056734	G	A	19056734	2	1	240	1	0	0	0	0	0	0	0	1	16085	1277	45	2		2	TMC7	16	19056734	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	169243	19056734	71298019	3278	22128										
TMC7	0	genome.wustl.edu	37	chr16	19067985	19067985	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatccatggtgtcacatccGaagcctttgcagttcctttc	7	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	19067985	19067985	G	C	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.1993	p.E665Q	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	69	0	0	62	16	20.51	-	-	-	C	19067985	G	C	19067985	3	2	240	1	0	0	0	0	1	0	0	0	16085	1059	37	3	2047	3	TMC7	16	19067985	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11251	19067985	71286768	3279	22129										
TMC5	0	genome.wustl.edu	37	chr16	19455423	19455423	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgctcagcagaacatcttCaatccagccctcatttcgtc	7	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	19455423	19455423	C	T	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.809	p.S270L	0.880	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	81	0	0	74	14	15.73	-	-	-	T	19455423	C	T	19455423	3	4	240	1	0	0	0	0	1	0	0	0	16083	838	29	2	815	2	TMC5	16	19455423	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	387438	19455423	70899330	3280	22130										
GPRC5B	0	genome.wustl.edu	37	chr16	19884141	19884141	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgagcacctggtgagctctCatctttctctctgatgccac	9	13	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	19884141	19884141	C	T	SNP	GPRC5B	ENST00000537135	human	ensembl	69_37n	-1	known	missense	c.105	p.M35I	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191	19	0	0	14	7	33.33	-	-	-	T	19884141	C	T	19884141	3	4	240	1	0	0	0	0	1	0	0	0	6776	826	29	2	1196	2	GPRC5B	16	19884141	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	428718	19884141	70470612	3281	22131										
GP2	0	genome.wustl.edu	37	chr16	20335310	20335310	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggcagggtgggtcccattCagccacatgggagcgtctgt	16	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	20335310	20335310	C	A	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	silent	c.363	p.L121	0.966	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	33	0	0	26	8	23.53	-	-	-	A	20335310	C	A	20335310	2	1	240	1	0	0	0	0	0	0	0	1	6632	813	29	2		2	GP2	16	20335310	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	451169	20335310	70019443	3282	22132										
UMOD	0	genome.wustl.edu	37	chr16	20352646	20352646	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgccggtcccgcccactctGatgtttagagcactgccagg	11	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	20352646	20352646	G	A	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	silent	c.1443	p.I481	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	48	0	0	37	6	13.95	-	-	-	A	20352646	G	A	20352646	2	1	240	1	0	0	0	0	0	0	0	1	17076	1280	45	2		2	UMOD	16	20352646	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17336	20352646	70002107	3283	22133										
ACSM2A	0	genome.wustl.edu	37	chr16	20476892	20476892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggtgaatgggaaggggaaGgaattaatgtggaatttcag	17	1	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	20476892	20476892	G	T	SNP	ACSM2A	ENST00000219054	human	ensembl	69_37n	1	known	missense	c.231	p.K77N	0.001	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747	207	1	0.48	162	45	21.74	-	-	-	T	20476892	G	T	20476892	3	4	240	1	0	0	0	0	1	0	0	0	183	991	35	4	237	4	ACSM2A	16	20476892	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	124246	20476892	69877861	3284	22134										
ERI2	0	genome.wustl.edu	37	chr16	20809729	20809729	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagtctcagatttttgagGagtttcctctatgtctccaa	8	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	20809729	20809729	G	C	SNP	ERI2	ENST00000357967	human	ensembl	69_37n	-1	known	missense	c.1393	p.P465A	0.002	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Znf_GRF,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI2	HGNC	ENSG00000196678	49	0	0	42	13	23.64	-	-	-	C	20809729	G	C	20809729	3	2	240	1	0	0	0	0	1	0	0	0	5265	1174	41	2	953	2	ERI2	16	20809729	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	332837	20809729	69545024	3285	22135										
DNAH3	0	genome.wustl.edu	37	chr16	21151873	21151873	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacctccaggtccgattcaGatggcttcttttctttactt	7	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	21151873	21151873	G	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.680	p.S227C	0.096	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	129	0	0	65	78	54.55	-	-	-	C	21151873	G	C	21151873	3	2	240	1	0	0	0	0	1	0	0	0	4639	942	33	2	11901	2	DNAH3	16	21151873	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	342144	21151873	69202880	3286	22136										
ZP2	0	genome.wustl.edu	37	chr16	21210926	21210926	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggacacagggcaggtcacaGaacacagtggggagtcaggg	17	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	21210926	21210926	G	T	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	missense	c.1892	p.S631Y	0.965	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	106	0	0	75	28	27.18	-	-	-	T	21210926	G	T	21210926	3	4	240	1	0	0	0	0	1	0	0	0	18309	942	33	2	361	2	ZP2	16	21210926	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59053	21210926	69143827	3287	22137										
UQCRC2	0	genome.wustl.edu	37	chr16	21974112	21974112	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggagttcctgctcaatgtCaccacagcaccagaatttcg	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	21974112	21974112	C	T	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	silent	c.420	p.V140	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	115	0	0	81	22	21.36	-	-	-	T	21974112	C	T	21974112	2	4	240	1	0	0	0	0	0	0	0	1	17117	813	29	2		2	UQCRC2	16	21974112	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	763186	21974112	68380641	3288	22138										
VWA3A	0	genome.wustl.edu	37	chr16	22111530	22111530	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcagaggctgcaggggagtGagacccagtcttcagattgg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	22111530	22111530	G	A	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	0.023	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	64	0	0	47	10	17.54	-	-	-	A	22111530	G	A	22111530	3	1	240	1	0	0	0	0	1	0	0	0	17337	1291	45	2	255	2	VWA3A	16	22111530	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	137418	22111530	68243223	3289	22139	211	2								
VWA3A	0	genome.wustl.edu	37	chr16	22111531	22111531	+	Missense_Mutation	SNP	A	A	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagaggctgcaggggagtgAgacccagtcttcagattggg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	22111531	22111531	A	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.242	p.E81V	0.096	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	63	0	0	49	10	16.95	-	-	-	T	22111531	A	T	22111531	3	4	240	1	0	0	0	0	1	0	0	0	17337	304	11	5	256	5	VWA3A	16	22111531	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	1	22111531	68243222	3290	22140	211	2								
USP31	0	genome.wustl.edu	37	chr16	23080829	23080829	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcttagcagacagggaccatGaaggtctcatgcaattttca	10	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	23080829	23080829	G	A	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.2597	p.S866L	0.975	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	26	0	0	29	7	19.44	-	-	-	A	23080829	G	A	23080829	3	1	240	1	0	0	0	0	1	0	0	0	17159	1294	45	2	1465	2	USP31	16	23080829	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	969298	23080829	67273924	3291	22141										
USP31	0	genome.wustl.edu	37	chr16	23085069	23085069	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgagctgttggctgaccatGacgggatggctgtccgcctc	14	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	23085069	23085069	G	A	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.2309	p.S770L	0.984	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	66	0	0	44	10	18.52	-	-	-	A	23085069	G	A	23085069	3	1	240	1	0	0	0	0	1	0	0	0	17159	1294	45	2	1761	2	USP31	16	23085069	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4240	23085069	67269684	3292	22142										
USP31	0	genome.wustl.edu	37	chr16	23098496	23098496	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactgaccacacgcaagctGaatggacacacctgcatcag	8	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	23098496	23098496	G	A	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	silent	c.1539	p.F513	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	31	0	0	32	13	28.89	-	-	-	A	23098496	G	A	23098496	2	1	240	1	0	0	0	0	0	0	0	1	17159	1281	45	2		2	USP31	16	23098496	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13427	23098496	67256257	3293	22143										
PRKCB	0	genome.wustl.edu	37	chr16	24202522	24202522	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagaaacttgaacgcaaaGagatccagcccccttataag	10	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	24202522	24202522	G	C	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.1834	p.E612Q	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	98	0	0	71	24	25.26	-	-	-	C	24202522	G	C	24202522	3	2	240	1	0	0	0	0	1	0	0	0	12589	943	33	2	1896	2	PRKCB	16	24202522	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1104026	24202522	66152231	3294	22144										
RBBP6	0	genome.wustl.edu	37	chr16	24574557	24574557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattgccagctgcagctcttGcatcagagcactcaaaggga	10	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	24574557	24574557	G	T	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.1327	p.A443S	0.991	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	60	0	0	37	10	21.28	-	-	-	T	24574557	G	T	24574557	3	4	240	1	0	0	0	0	1	0	0	0	13186	1319	46	4	1423	4	RBBP6	16	24574557	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	372035	24574557	65780196	3295	22145										
TNRC6A	0	genome.wustl.edu	37	chr16	24804841	24804841	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctactccagccacaactgtgGataatggtacttcagcatgg	9	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	24804841	24804841	G	C	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.3223	p.D1075H	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	56	0	0	38	17	30.91	-	-	-	C	24804841	G	C	24804841	3	2	240	1	0	0	0	0	1	0	0	0	16435	1174	41	2	3249	2	TNRC6A	16	24804841	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230284	24804841	65549912	3296	22146										
ARHGAP17	0	genome.wustl.edu	37	chr16	24953404	24953404	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcgtttccagtgtggaatGagtgattagaactcggggtg	15	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	24953404	24953404	G	C	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	nonsense	c.1394	p.S465*	0.988	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	69	0	0	58	21	25.93	-	-	-	C	24953404	G	C	24953404	4	2	240	1	0	0	0	0	0	1	0	0	869	1294	45	2	1271	2	ARHGAP17	16	24953404	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	148563	24953404	65401349	3297	22147										
KIAA0556	0	genome.wustl.edu	37	chr16	27761260	27761260	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacagacactatgtcggcctCaacggaatagaaatattcag	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	27761260	27761260	C	G	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	silent	c.2979	p.L993	0.446	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	18	0	0	19	5	20.83	-	-	-	G	27761260	C	G	27761260	2	3	240	1	0	0	0	0	0	0	0	1	8235	813	29	2		2	KIAA0556	16	27761260	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2807856	27761260	62593493	3298	22148										
KIAA0556	0	genome.wustl.edu	37	chr16	27761457	27761457	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgcggggcagatcccactCcatcaccattgacttcacgc	8	17	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	27761457	27761457	C	A	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.3176	p.S1059Y	0.446	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	69	0	0	47	24	33.8	-	-	-	A	27761457	C	A	27761457	3	1	240	1	0	0	0	0	1	0	0	0	8235	855	30	2	3238	2	KIAA0556	16	27761457	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	197	27761457	62593296	3299	22149										
SULT1A1	0	genome.wustl.edu	37	chr16	28617453	28617453	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagttggtcatagggttcttCttcatctccttgaacgacgt	9	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28617453	28617453	C	G	SNP	SULT1A1	ENST00000314752	human	ensembl	69_37n	-1	known	missense	c.699	p.K233N	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1A1	HGNC	ENSG00000196502	113	0	0	105	22	17.32	-	-	-	G	28617453	C	G	28617453	3	3	240	1	0	0	0	0	1	0	0	0	15463	912	32	2	196	2	SULT1A1	16	28617453	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	855996	28617453	61737300	3300	22150										
ATXN2L	0	genome.wustl.edu	37	chr16	28846921	28846921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggacagccacagcagaatCtgtaccacccaggggccctg	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28846921	28846921	C	G	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	missense	c.2737	p.L913V	0.997	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	32	0	0	21	4	16	-	-	-	G	28846921	C	G	28846921	3	3	240	1	0	0	0	0	1	0	0	0	1216	912	32	2	2819	2	ATXN2L	16	28846921	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	229468	28846921	61507832	3301	22151										
TUFM	0	genome.wustl.edu	37	chr16	28854406	28854406	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgaaacgctggcctttctCtaagatcattggctgccgca	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28854406	28854406	C	G	SNP	TUFM	ENST00000313511	human	ensembl	69_37n	-1	known	missense	c.1258	p.E420Q	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952	64	0	0	53	10	15.87	-	-	-	G	28854406	C	G	28854406	3	3	240	1	0	0	0	0	1	0	0	0	16868	922	32	2	113	2	TUFM	16	28854406	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7485	28854406	61500347	3302	22152										
TUFM	0	genome.wustl.edu	37	chr16	28857237	28857237	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccaaccccactcactcttCgtgatggctgcagtcagcgt	8	17	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28857237	28857237	C	T	SNP	TUFM	ENST00000313511	human	ensembl	69_37n	-1	known	silent	c.243	p.T81	0.696	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952	30	0	0	38	11	22.45	-	-	-	T	28857237	C	T	28857237	2	4	240	1	0	0	0	0	0	0	0	1	16868	871	31	1		1	TUFM	16	28857237	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2831	28857237	61497516	3303	22153										
SH2B1	0	genome.wustl.edu	37	chr16	28878735	28878735	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagatgcctgaccgggaGaacacgtttgtggttaaggt	15	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28878735	28878735	G	C	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.1023	p.E341D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	83	0	0	71	18	20.22	-	-	-	C	28878735	G	C	28878735	3	2	240	1	0	0	0	0	1	0	0	0	14315	933	33	2	1029	2	SH2B1	16	28878735	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21498	28878735	61476018	3304	22154										
ATP2A1	0	genome.wustl.edu	37	chr16	28890878	28890878	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagacctcctggtgcggattCtcctcctggccgcatgcatt	10	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28890878	28890878	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.193	p.L65F	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	117	1	0.85	57	23	28.75	-	-	-	T	28890878	C	T	28890878	3	4	240	1	0	0	0	0	1	0	0	0	1140	913	32	2	203	2	ATP2A1	16	28890878	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12143	28890878	61463875	3305	22155										
RABEP2	0	genome.wustl.edu	37	chr16	28935841	28935841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccttcatggtttccatttCtgccagggcgcctgccagct	10	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28935841	28935841	C	G	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	missense	c.157	p.E53Q	1.000	prints_Rabaptin	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	22	0	0	24	9	27.27	-	-	-	G	28935841	C	G	28935841	3	3	240	1	0	0	0	0	1	0	0	0	13045	922	32	2	1600	2	RABEP2	16	28935841	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44963	28935841	61418912	3306	22156										
SPNS1	0	genome.wustl.edu	37	chr16	28986584	28986584	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggggaacccgaagtccgagGagcccgaggtcccggaccag	16	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	28986584	28986584	G	A	SNP	SPNS1	ENST00000311008	human	ensembl	69_37n	1	known	missense	c.112	p.E38K	0.999	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682	38	0	0	21	9	30	-	-	-	A	28986584	G	A	28986584	3	1	240	1	0	0	0	0	1	0	0	0	15165	1175	41	2	114	2	SPNS1	16	28986584	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	50743	28986584	61368169	3307	22157										
MAZ	0	genome.wustl.edu	37	chr16	29820003	29820003	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgagctcggcttatatttCggaccacatgaaggtgcaca	11	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	29820003	29820003	C	G	SNP	MAZ	ENST00000219782	human	ensembl	69_37n	1	known	missense	c.1220	p.S407W	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495	24	0	0	24	12	33.33	-	-	-	G	29820003	C	G	29820003	3	3	240	1	0	0	0	0	1	0	0	0	9411	893	31	3	1234	3	MAZ	16	29820003	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	833419	29820003	60534750	3308	22158										
TAOK2	0	genome.wustl.edu	37	chr16	29990153	29990153	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcctgggctcagcttctGaccttctagaaggtaagtga	11	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	29990153	29990153	G	T	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	missense	c.340	p.D114Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	82	0	0	46	6	11.54	-	-	-	T	29990153	G	T	29990153	3	4	240	1	0	0	0	0	1	0	0	0	15640	1290	45	2	354	2	TAOK2	16	29990153	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	170150	29990153	60364600	3309	22159										
ZNF785	0	genome.wustl.edu	37	chr16	30594472	30594472	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaggtacctgcgctgggaGaaacgcgcctgacactggcc	14	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	30594472	30594472	G	A	SNP	ZNF785	ENST00000395216	human	ensembl	69_37n	-1	known	silent	c.627	p.F209	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	64	0	0	37	22	37.29	-	-	-	A	30594472	G	A	30594472	2	1	240	1	0	0	0	0	0	0	0	1	18250	933	33	2		2	ZNF785	16	30594472	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	604319	30594472	59760281	3310	22160										
PRR14	0	genome.wustl.edu	37	chr16	30666207	30666207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcactgcgtctgtcagccccCggcccccaatccgccagtgg	11	19	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	30666207	30666207	C	T	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	missense	c.916	p.R306W	1.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	27	0	0	11	13	54.17	-	-	-	T	30666207	C	T	30666207	3	4	240	1	0	0	0	0	1	0	0	0	12667	643	23	1	942	1	PRR14	16	30666207	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71735	30666207	59688546	3311	22161										
SRCAP	0	genome.wustl.edu	37	chr16	30735969	30735969	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccaggaccaccactgggtCcaactcagacgctgtctctg	9	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	30735969	30735969	C	G	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.5224	p.P1742A	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	28	0	0	32	10	23.81	-	-	-	G	30735969	C	G	30735969	3	3	240	1	0	0	0	0	1	0	0	0	15226	855	30	2	5314	2	SRCAP	16	30735969	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69762	30735969	59618784	3312	22162										
RNF40	0	genome.wustl.edu	37	chr16	30775646	30775646	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctgtgtctcgtgtggtaGaggcctcagaccgcctacag	13	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	30775646	30775646	G	C	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.589	p.E197Q	0.987	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	61	0	0	60	17	21.79	-	-	-	C	30775646	G	C	30775646	3	2	240	1	0	0	0	0	1	0	0	0	13579	943	33	2	603	2	RNF40	16	30775646	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39677	30775646	59579107	3313	22163										
STX1B	0	genome.wustl.edu	37	chr16	31004170	31004170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagcgtccccccaatggatGacgccaagaccacccccagc	8	20	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31004170	31004170	G	A	SNP	STX1B	ENST00000215095	human	ensembl	69_37n	-1	known	missense	c.839	p.S280L	1.000	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1B	HGNC	ENSG00000099365	30	0	0	20	6	23.08	-	-	-	A	31004170	G	A	31004170	3	1	240	1	0	0	0	0	1	0	0	0	15435	1294	45	2	31	2	STX1B	16	31004170	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	228524	31004170	59350583	3314	22164										
STX4	0	genome.wustl.edu	37	chr16	31045340	31045340	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgggcctggcagggggatGacagctcggacgaagaggac	18	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31045340	31045340	G	A	SNP	STX4	ENST00000313843	human	ensembl	69_37n	1	known	missense	c.37	p.D13N	1.000	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX4	HGNC	ENSG00000103496	33	0	0	22	7	24.14	-	-	-	A	31045340	G	A	31045340	3	1	240	1	0	0	0	0	1	0	0	0	15438	1290	45	2	43	2	STX4	16	31045340	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41170	31045340	59309413	3315	22165										
PRSS36	0	genome.wustl.edu	37	chr16	31153200	31153200	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagaaggctcggggacgtaGacagccactgggaaagtctc	15	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31153200	31153200	G	C	SNP	PRSS36	ENST00000268281	human	ensembl	69_37n	-1	known	missense	c.1603	p.L535V	0.998	pirsf_Pept_S1A_polyserase-2,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS36	HGNC	ENSG00000178226	22	0	0	17	7	29.17	-	-	-	C	31153200	G	C	31153200	3	2	240	1	0	0	0	0	1	0	0	0	12705	933	33	2	984	2	PRSS36	16	31153200	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	107860	31153200	59201553	3316	22166										
ITGAX	0	genome.wustl.edu	37	chr16	31371337	31371337	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagcctgttggcttctgttCaccagctgcaagggtttaca	10	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31371337	31371337	C	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.658	p.H220N	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	87	0	0	67	16	19.28	-	-	-	A	31371337	C	A	31371337	3	1	240	1	0	0	0	0	1	0	0	0	7943	826	29	2	684	2	ITGAX	16	31371337	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	218137	31371337	58983416	3317	22167										
ITGAX	0	genome.wustl.edu	37	chr16	31374687	31374687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacccagcatcagcccctccCacagccaggtgaggccgtgt	11	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31374687	31374687	C	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.1702	p.H568N	0.031	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	94	0	0	55	19	25.68	-	-	-	A	31374687	C	A	31374687	3	1	240	1	0	0	0	0	1	0	0	0	7943	594	21	4	1756	4	ITGAX	16	31374687	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3350	31374687	58980066	3318	22168										
ARMC5	0	genome.wustl.edu	37	chr16	31473254	31473254	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgttgcagtgaccattcttCagtgcatgaagacagacagc	10	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31473254	31473254	C	T	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	nonsense	c.772	p.Q258*	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	90	0	0	58	25	30.12	-	-	-	T	31473254	C	T	31473254	4	4	240	1	0	0	0	0	0	1	0	0	958	827	29	2	493	2	ARMC5	16	31473254	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98567	31473254	58881499	3319	22169										
ARMC5	0	genome.wustl.edu	37	chr16	31473948	31473948	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcctatgtcgtgaggccatCaaccgggcccgactgcggga	13	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31473948	31473948	C	G	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	missense	c.1365	p.I455M	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	59	0	0	29	35	54.69	-	-	-	G	31473948	C	G	31473948	3	3	240	1	0	0	0	0	1	0	0	0	958	816	29	2	1090	2	ARMC5	16	31473948	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	694	31473948	58880805	3320	22170										
TGFB1I1	0	genome.wustl.edu	37	chr16	31487873	31487873	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcagttgcggggagcccttCggagatgagggtgagagtga	19	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	31487873	31487873	C	G	SNP	TGFB1I1	ENST00000394863	human	ensembl	69_37n	1	known	missense	c.960	p.F320L	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	TGFB1I1	HGNC	ENSG00000140682	36	0	0	23	7	23.33	-	-	-	G	31487873	C	G	31487873	3	3	240	1	0	0	0	0	1	0	0	0	15912	883	31	3	994	3	TGFB1I1	16	31487873	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13925	31487873	58866880	3321	22171										
GPT2	0	genome.wustl.edu	37	chr16	46956200	46956200	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtgatcaacctgcaccctGagatcaagggccagctggtg	13	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	46956200	46956200	G	T	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	1	known	nonsense	c.1084	p.E362*	0.994	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	52	0	0	35	15	30	-	-	-	T	46956200	G	T	46956200	4	4	240	1	0	0	0	0	0	1	0	0	6789	1291	45	2	1114	2	GPT2	16	46956200	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15468327	46956200	43398553	3322	22172										
ABCC11	0	genome.wustl.edu	37	chr16	48221246	48221246	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctctgaaaagatgggcaaGagctggtccagctgttccaa	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	48221246	48221246	G	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	silent	c.2799	p.L933	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	59	0	0	32	18	36	-	-	-	C	48221246	G	C	48221246	2	2	240	1	0	0	0	0	0	0	0	1	51	929	33	2		2	ABCC11	16	48221246	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1265046	48221246	42133507	3323	22173										
LONP2	0	genome.wustl.edu	37	chr16	48295398	48295398	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtactttagaagatgaagatGaagatgaagataatgatgac	11	2	0	10			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	48295398	48295398	G	A	SNP	LONP2	ENST00000285737	human	ensembl	69_37n	1	known	missense	c.787	p.E263K	1.000	tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC	ENSG00000102910	102	0	0	63	22	25.88	-	-	-	A	48295398	G	A	48295398	3	1	240	1	0	0	0	0	1	0	0	0	8959	1291	45	2	805	2	LONP2	16	48295398	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	74152	48295398	42059355	3324	22174										
HEATR3	0	genome.wustl.edu	37	chr16	50138963	50138963	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaactgttgagaaaagactGacttcttaaacaatccaaaa	6	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	50138963	50138963	G	A	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	silent	c.2034	p.L678	0.990	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	108	0	0	46	14	23.33	-	-	-	A	50138963	G	A	50138963	2	1	240	1	0	0	0	0	0	0	0	1	7080	1277	45	2		2	HEATR3	16	50138963	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1843565	50138963	40215790	3325	22175										
ADCY7	0	genome.wustl.edu	37	chr16	50344681	50344681	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagccaaaggttgtgctgctGacagtggccctggtggccta	15	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	50344681	50344681	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	silent	c.2244	p.L748	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	48	0	0	23	10	30.3	-	-	-	A	50344681	G	A	50344681	2	1	240	1	0	0	0	0	0	0	0	1	299	1277	45	2		2	ADCY7	16	50344681	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	205718	50344681	40010072	3326	22176										
BRD7	0	genome.wustl.edu	37	chr16	50373907	50373907	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggctaagaattttcattcCtgagtgcaacagcttctttg	8	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	50373907	50373907	C	G	SNP	BRD7	ENST00000394689	human	ensembl	69_37n	-1	known	missense	c.682	p.G228R	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	170	0	0	59	32	35.16	-	-	-	G	50373907	C	G	50373907	3	3	240	1	0	0	0	0	1	0	0	0	1513	690	24	4	1324	4	BRD7	16	50373907	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29226	50373907	39980846	3327	22177										
CHD9	0	genome.wustl.edu	37	chr16	53348426	53348426	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagaaataaaccacctaatCatgtaagtaaagcagtactt	5	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	53348426	53348426	C	T	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.7360	p.H2454Y	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	57	0	0	36	17	32.08	-	-	-	T	53348426	C	T	53348426	3	4	240	1	0	0	0	0	1	0	0	0	3361	826	29	2	7446	2	CHD9	16	53348426	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2974519	53348426	37006327	3328	22178										
FTO	0	genome.wustl.edu	37	chr16	53922804	53922804	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcgatacagaaagtgcactGactggtggtgtcaacccatg	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	53922804	53922804	G	A	SNP	FTO	ENST00000471389	human	ensembl	69_37n	1	known	missense	c.1180	p.D394N	0.899	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718	147	0	0	103	41	28.47	-	-	-	A	53922804	G	A	53922804	3	1	240	1	0	0	0	0	1	0	0	0	6135	1290	45	2	1206	2	FTO	16	53922804	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	574378	53922804	36431949	3329	22179										
MMP2	0	genome.wustl.edu	37	chr16	55523672	55523672	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccggccgcagtgacggaaaGatgtggtgtgcgaccacagc	16	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	55523672	55523672	G	C	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	missense	c.1116	p.K372N	0.970	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	35	0	0	25	7	21.88	-	-	-	C	55523672	G	C	55523672	3	2	240	1	0	0	0	0	1	0	0	0	9729	933	33	2	1149	2	MMP2	16	55523672	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1600868	55523672	34831081	3330	22180										
SLC12A3	0	genome.wustl.edu	37	chr16	56916369	56916369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgctcctatgccctcatCaacttcagctgcttccacgc	5	18	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	56916369	56916369	C	G	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	missense	c.1629	p.I543M	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	221	1	0.45	156	70	30.84	-	-	-	G	56916369	C	G	56916369	3	3	240	1	0	0	0	0	1	0	0	0	14473	816	29	2	1679	2	SLC12A3	16	56916369	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1392697	56916369	33438384	3331	22181										
CETP	0	genome.wustl.edu	37	chr16	57003592	57003592	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccagatcaacacacagctGagtatgtgtcaagcgtcctc	8	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	57003592	57003592	G	C	SNP	CETP	ENST00000200676	human	ensembl	69_37n	1	known	silent	c.438	p.L146	0.687	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237	126	0	0	89	41	31.3	-	-	-	C	57003592	G	C	57003592	2	2	240	1	0	0	0	0	0	0	0	1	3306	1304	45	2		2	CETP	16	57003592	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	87223	57003592	33351161	3332	22182										
NLRC5	0	genome.wustl.edu	37	chr16	57111211	57111211	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgttttctcccccaagcttGagccacaaccagattggaga	8	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	57111211	57111211	G	C	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.4839	p.L1613F	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	34	0	0	22	8	26.67	-	-	-	C	57111211	G	C	57111211	3	2	240	1	0	0	0	0	1	0	0	0	10542	1281	45	2	4993	2	NLRC5	16	57111211	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	107619	57111211	33243542	3333	22183										
GPR97	0	genome.wustl.edu	37	chr16	57713199	57713199	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgagcctctggagatcgtCttctctcaccagcgaccgcc	10	16	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	57713199	57713199	C	T	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	silent	c.603	p.V201	1.000	prints_GPCR_2_orphan_rcpt_GPR56	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	49	0	0	25	12	32.43	-	-	-	T	57713199	C	T	57713199	2	4	240	1	0	0	0	0	0	0	0	1	6771	900	32	2		2	GPR97	16	57713199	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	601988	57713199	32641554	3334	22184										
CNGB1	0	genome.wustl.edu	37	chr16	57935527	57935527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcaccatcagctctgactCatctgtgaacaaggcctggc	9	14	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	57935527	57935527	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	missense	c.2797	p.E933K	1.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	65	0	0	43	12	21.82	-	-	-	T	57935527	C	T	57935527	3	4	240	1	0	0	0	0	1	0	0	0	3630	835	29	2	982	2	CNGB1	16	57935527	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	222328	57935527	32419226	3335	22185										
C16orf80	0	genome.wustl.edu	37	chr16	58148822	58148822	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggatgcgacaatttgcatgGatctgtcaaggcaatgcttc	11	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	58148822	58148822	G	A	SNP	C16orf80	ENST00000262498	human	ensembl	69_37n	-1	known	silent	c.468	p.I156	1.000	pfam_DUF667	pfam_DUF667	-	no_errors	C16orf80	HGNC	ENSG00000070761	86	0	0	41	15	26.79	-	-	-	A	58148822	G	A	58148822	2	1	240	1	0	0	0	0	0	0	0	1	1850	1164	41	2		2	C16orf80	16	58148822	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	213295	58148822	32205931	3336	22186										
SLC38A7	0	genome.wustl.edu	37	chr16	58712733	58712733	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacctcctggtaggtcctCtcattgctggcctgggagca	11	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	58712733	58712733	C	G	SNP	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	missense	c.336	p.E112D	0.990	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	57	0	0	49	20	28.99	-	-	-	G	58712733	C	G	58712733	3	3	240	1	0	0	0	0	1	0	0	0	14698	912	32	2	1088	2	SLC38A7	16	58712733	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	563911	58712733	31642020	3337	22187										
NAE1	0	genome.wustl.edu	37	chr16	66842961	66842961	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgacatcttaccactcgaaGaaatgcagaattgctgcctg	8	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	66842961	66842961	G	C	SNP	NAE1	ENST00000290810	human	ensembl	69_37n	-1	known	missense	c.1168	p.L390V	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593	87	0	0	73	19	20.65	-	-	-	C	66842961	G	C	66842961	3	2	240	1	0	0	0	0	1	0	0	0	10211	942	33	2	456	2	NAE1	16	66842961	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8130228	66842961	23511792	3338	22188										
CDH16	0	genome.wustl.edu	37	chr16	66951570	66951570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaggtataaagggaaatttCcaccatagttttctggaact	8	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	66951570	66951570	C	G	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	missense	c.104	p.G35A	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	39	0	0	40	12	23.08	-	-	-	G	66951570	C	G	66951570	3	3	240	1	0	0	0	0	1	0	0	0	3130	855	30	2	2449	2	CDH16	16	66951570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	108609	66951570	23403183	3339	22189										
FBXL8	0	genome.wustl.edu	37	chr16	67196909	67196909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggccgtgccccggggctgcGaggcctgcgcctggagtgcc	19	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67196909	67196909	G	A	SNP	FBXL8	ENST00000258200	human	ensembl	69_37n	1	known	missense	c.311	p.R104Q	0.318	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL8	HGNC	ENSG00000135722	22	0	0	12	6	33.33	-	-	-	A	67196909	G	A	67196909	3	1	240	1	0	0	0	0	1	0	0	0	5771	1058	37	1	317	1	FBXL8	16	67196909	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	245339	67196909	23157844	3340	22190										
FHOD1	0	genome.wustl.edu	37	chr16	67263608	67263608	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatctccgagcccactcttCaacgtccttctcactgcagg	6	17	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67263608	67263608	C	G	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	missense	c.3426	p.L1142F	0.999	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	70	0	0	90	26	22.22	-	-	-	G	67263608	C	G	67263608	3	3	240	1	0	0	0	0	1	0	0	0	5928	825	29	2	72	2	FHOD1	16	67263608	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66699	67263608	23091145	3341	22191										
FHOD1	0	genome.wustl.edu	37	chr16	67265426	67265426	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgttccatacccactttCaggtcaaacagtggctcagc	8	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67265426	67265426	C	T	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	silent	c.2412	p.L804	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	101	0	0	130	22	14.47	-	-	-	T	67265426	C	T	67265426	2	4	240	1	0	0	0	0	0	0	0	1	5928	813	29	2		2	FHOD1	16	67265426	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1818	67265426	23089327	3342	22192										
LRRC36	0	genome.wustl.edu	37	chr16	67412590	67412590	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgctgccatctcaattgtGagtgggcaacagtcacatac	11	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67412590	67412590	G	A	SNP	LRRC36	ENST00000290940	human	ensembl	69_37n	1	known	missense	c.955	p.E319K	0.898	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708	93	0	0	75	23	23.47	-	-	-	A	67412590	G	A	67412590	3	1	240	1	0	0	0	0	1	0	0	0	9056	1277	45	2	1979	2	LRRC36	16	67412590	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	147164	67412590	22942163	3343	22193										
LRRC36	0	genome.wustl.edu	37	chr16	67418913	67418913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggaaaagcacgttgtcttCctcctcaccagtggcacatg	10	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67418913	67418913	C	A	SNP	LRRC36	ENST00000329956	human	ensembl	69_37n	1	known	missense	c.2186	p.S729Y	1.000	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708	45	0	0	58	11	15.94	-	-	-	A	67418913	C	A	67418913	3	1	240	1	0	0	0	0	1	0	0	0	9056	855	30	2	2268	2	LRRC36	16	67418913	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6323	67418913	22935840	3344	22194										
FAM65A	0	genome.wustl.edu	37	chr16	67575861	67575861	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatccagcccacagctctCaggcactgcccgccactcac	6	21	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67575861	67575861	C	T	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.1232	p.S411L	0.998	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	21	0	0	19	5	20.83	-	-	-	T	67575861	C	T	67575861	3	4	240	1	0	0	0	0	1	0	0	0	5644	838	29	2	1218	2	FAM65A	16	67575861	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	156948	67575861	22778892	3345	22195										
RLTPR	0	genome.wustl.edu	37	chr16	67679969	67679969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggccatggcgctgcagGagacaccccctcaggtgaga	13	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67679969	67679969	G	A	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	35	0	0	60	8	11.76	-	-	-	A	67679969	G	A	67679969	3	1	240	1	0	0	0	0	1	0	0	0	13480	1175	41	2	249	2	RLTPR	16	67679969	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	104108	67679969	22674784	3346	22196										
PARD6A	0	genome.wustl.edu	37	chr16	67696312	67696312	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgtttgacaggtcctccctCtgcagggcctgggcctgctg	14	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67696312	67696312	C	G	SNP	PARD6A	ENST00000219255	human	ensembl	69_37n	1	known	missense	c.803	p.S268C	0.036	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6A	HGNC	ENSG00000102981	49	0	0	37	26	41.27	-	-	-	G	67696312	C	G	67696312	3	3	240	1	0	0	0	0	1	0	0	0	11518	913	32	2	813	2	PARD6A	16	67696312	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16343	67696312	22658441	3347	22197										
GFOD2	0	genome.wustl.edu	37	chr16	67719501	67719501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagcaagctgcttcgcctCctcctcagtcttcccccaca	5	20	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67719501	67719501	C	T	SNP	GFOD2	ENST00000268797	human	ensembl	69_37n	-1	known	missense	c.118	p.E40K	1.000	pfam_Oxidoreductase_N	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098	36	0	0	39	14	26.42	-	-	-	T	67719501	C	T	67719501	3	4	240	1	0	0	0	0	1	0	0	0	6396	864	30	2	1047	2	GFOD2	16	67719501	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23189	67719501	22635252	3348	22198										
SLC12A4	0	genome.wustl.edu	37	chr16	67986291	67986291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgacgtgtcatgagcacccGatgggtaaaaaatggcagct	12	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	67986291	67986291	G	A	SNP	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	missense	c.719	p.S240L	0.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	138	0	0	140	32	18.6	-	-	-	A	67986291	G	A	67986291	3	1	240	1	0	0	0	0	1	0	0	0	14474	1059	37	1	2616	1	SLC12A4	16	67986291	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	266790	67986291	22368462	3349	22199										
DUS2L	0	genome.wustl.edu	37	chr16	68071937	68071937	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaggaggaaatgattttgaAtagcctctctctgtgttacc	10	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	68071937	68071937	A	C	SNP	DUS2L	ENST00000358896	human	ensembl	69_37n	1	known	missense	c.11	p.N4T	1.000	NULL	pfam_tRNA_hU_synthase,pfam_Ds-RNA-bd,smart_Ds-RNA-bd	-	no_errors	DUS2L	HGNC	ENSG00000167264	156	0	0	158	32	16.58	-	-	-	C	68071937	A	C	68071937	3	2	240	1	0	0	0	0	1	0	0	0	4841	101	4	5	13	5	DUS2L	16	68071937	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	85646	68071937	22282816	3350	22200										
ESRP2	0	genome.wustl.edu	37	chr16	68264341	68264341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttcataccagccgtgtatGggacaccctgcatgcggacc	10	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	68264341	68264341	G	C	SNP	ESRP2	ENST00000565858	human	ensembl	69_37n	-1	known	missense	c.2045	p.P682R	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	72	0	0	93	11	10.48	-	-	-	C	68264341	G	C	68264341	3	2	240	1	0	0	0	0	1	0	0	0	5296	1348	47	4	146	4	ESRP2	16	68264341	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192404	68264341	22090412	3351	22201										
ZFP90	0	genome.wustl.edu	37	chr16	68598488	68598488	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaccaacctgcatgatcatCagagaattcatactggagaa	7	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	68598488	68598488	C	T	SNP	ZFP90	ENST00000398253	human	ensembl	69_37n	1	known	nonsense	c.1798	p.Q600*	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939	58	0	0	41	9	18	-	-	-	T	68598488	C	T	68598488	4	4	240	1	0	0	0	0	0	1	0	0	17750	827	29	2	1812	2	ZFP90	16	68598488	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	334147	68598488	21756265	3352	22202										
TMCO7	0	genome.wustl.edu	37	chr16	69056788	69056788	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccttcctgaggggagtgaGagatcctgatggtgctcaca	13	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	69056788	69056788	G	C	SNP	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	missense	c.2900	p.R967T	0.981	superfamily_ARM-type_fold	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	76	0	0	50	42	45.65	-	-	-	C	69056788	G	C	69056788	3	2	240	1	0	0	0	0	1	0	0	0	16096	942	33	2	2962	2	TMCO7	16	69056788	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	458300	69056788	21297965	3353	22203										
WWP2	0	genome.wustl.edu	37	chr16	69959378	69959378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcccctgggccccctccctCctggctggggtaagtactga	11	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	69959378	69959378	C	G	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.1225	p.P409A	0.999	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	183	0	0	193	34	14.98	-	-	-	G	69959378	C	G	69959378	3	3	240	1	0	0	0	0	1	0	0	0	17513	855	30	2	1267	2	WWP2	16	69959378	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	902590	69959378	20395375	3354	22204										
WWP2	0	genome.wustl.edu	37	chr16	69971129	69971129	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgcgctactttgacgaGaaagagctggaggtgagtgt	16	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	69971129	69971129	G	C	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.2226	p.E742D	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	41	0	0	59	16	21.33	-	-	-	C	69971129	G	C	69971129	3	2	240	1	0	0	0	0	1	0	0	0	17513	933	33	2	2304	2	WWP2	16	69971129	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11751	69971129	20383624	3355	22205										
AARS	0	genome.wustl.edu	37	chr16	70295061	70295061	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcactgtaaactctgttttCtaagaggggtcaaggaagag	11	6	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	70295061	70295061	C	G	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	splice_site	c.1672-1	e12-1	1.000	-	-	-	no_errors	AARS	HGNC	ENSG00000090861	71	0	0	83	21	20.19	-	-	-	G	70295061	C	G	70295061	5	3	240	1	0	0	0	0	0	0	1	0	19	927	32	2	1271	2	AARS	16	70295061	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	323932	70295061	20059692	3356	22206										
SF3B3	0	genome.wustl.edu	37	chr16	70595653	70595653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcctcggaacagtgtcccGagggcattgtggccatctcc	12	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	70595653	70595653	G	C	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	missense	c.2254	p.E752Q	1.000	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	67	0	0	73	18	19.78	-	-	-	C	70595653	G	C	70595653	3	2	240	1	0	0	0	0	1	0	0	0	14240	1059	37	3	2316	3	SF3B3	16	70595653	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	300592	70595653	19759100	3357	22207										
IL34	0	genome.wustl.edu	37	chr16	70694004	70694004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggccacccagctgtaccctCcgcccccgtggtcccccagc	9	23	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	70694004	70694004	C	T	SNP	IL34	ENST00000288098	human	ensembl	69_37n	1	known	missense	c.643	p.P215S	0.000	NULL	prints_Interleukin-34	-	no_errors	IL34	HGNC	ENSG00000157368	18	0	0	28	11	28.21	-	-	-	T	70694004	C	T	70694004	3	4	240	1	0	0	0	0	1	0	0	0	7748	855	30	2	665	2	IL34	16	70694004	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	98351	70694004	19660749	3358	22208										
HYDIN	0	genome.wustl.edu	37	chr16	70989399	70989399	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcacaatggagtcgatgctCaggcaggctgcgttgtagta	14	8	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	70989399	70989399	C	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.6192	p.L2064	0.908	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	43	0	0	68	24	26.09	-	-	-	G	70989399	C	G	70989399	2	3	240	1	0	0	0	0	0	0	0	1	7521	813	29	2		2	HYDIN	16	70989399	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	295395	70989399	19365354	3359	22209										
HYDIN	0	genome.wustl.edu	37	chr16	71127739	71127739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcataacaatgtgcagatCcagtgaaaactttcccaata	5	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71127739	71127739	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.1427	p.G476V	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	61	0	0	83	12	12.63	-	-	-	A	71127739	C	A	71127739	3	1	240	1	0	0	0	0	1	0	0	0	7521	855	30	2	14251	2	HYDIN	16	71127739	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	138340	71127739	19227014	3360	22210										
HYDIN	0	genome.wustl.edu	37	chr16	71171212	71171212	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttatccagccttatattCatgtctatggcagctccata	5	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71171212	71171212	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.885	p.M295I	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	23	0	0	19	18	48.65	-	-	-	T	71171212	C	T	71171212	3	4	240	1	0	0	0	0	1	0	0	0	7521	826	29	2	14805	2	HYDIN	16	71171212	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43473	71171212	19183541	3361	22211										
FTSJD1	0	genome.wustl.edu	37	chr16	71319328	71319328	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcgctacccaactccaatGacaaggaaaccgatgggatt	8	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71319328	71319328	G	A	SNP	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	missense	c.496	p.H166Y	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	43	0	0	47	10	17.54	-	-	-	A	71319328	G	A	71319328	3	1	240	1	0	0	0	0	1	0	0	0	6139	1290	45	2	1820	2	FTSJD1	16	71319328	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	148116	71319328	19035425	3362	22212										
PHLPP2	0	genome.wustl.edu	37	chr16	71689143	71689143	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttcaacccacctgcttacCtgtgagataccaagaaggtg	8	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71689143	71689143	C	A	SNP	PHLPP2	ENST00000564884	human	ensembl	69_37n	-1	known	nonsense	c.673	p.G225*	1.000	pfam_PP2C-like,superfamily_PP2C-like	pfam_Leu-rich_rpt,pfam_PP2C-like,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHLPP2	HGNC	ENSG00000040199	105	0	0	126	19	13.1	-	-	-	A	71689143	C	A	71689143	4	1	240	1	0	0	0	0	0	1	0	0	11929	695	24	4	1398	4	PHLPP2	16	71689143	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	369815	71689143	18665610	3363	22213										
PHLPP2	0	genome.wustl.edu	37	chr16	71712799	71712799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgactaaagttgttgaagGaaattcccaaggaggaaagc	11	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71712799	71712799	G	A	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.1127	p.S376F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	75	0	0	54	15	21.74	-	-	-	A	71712799	G	A	71712799	3	1	240	1	0	0	0	0	1	0	0	0	11929	1174	41	2	2892	2	PHLPP2	16	71712799	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23656	71712799	18641954	3364	22214										
PHLPP2	0	genome.wustl.edu	37	chr16	71748425	71748425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagacctcacctgaccaggtCtccatgaagctgtaaataaa	8	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71748425	71748425	C	G	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.274	p.D92H	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	87	0	0	65	60	48	-	-	-	G	71748425	C	G	71748425	3	3	240	1	0	0	0	0	1	0	0	0	11929	913	32	2	3769	2	PHLPP2	16	71748425	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	35626	71748425	18606328	3365	22215										
AP1G1	0	genome.wustl.edu	37	chr16	71808376	71808376	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagtaagacttacttcttGatacagttggtcatgagaag	9	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	71808376	71808376	G	C	SNP	AP1G1	ENST00000433195	human	ensembl	69_37n	-1	known	missense	c.390	p.I130M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747	117	0	0	128	20	13.51	-	-	-	C	71808376	G	C	71808376	3	2	240	1	0	0	0	0	1	0	0	0	733	1280	45	2	2244	2	AP1G1	16	71808376	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59951	71808376	18546377	3366	22216										
DHX38	0	genome.wustl.edu	37	chr16	72130173	72130173	+	Missense_Mutation	SNP	C	C	G													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagcgagcagcatgtcttCaaggctcctgctccccgccc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72130173	72130173	C	G	SNP	DHX38	ENST00000268482	human	ensembl	69_37n	1	known	missense	c.117	p.F39L	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	44	0	0	27	22	44.9	-	-	-	G	72130173	C	G	72130173	3	3	240	1	0	0	0	0	1	0	0	0	4547	825	29	2	119	2	DHX38	16	72130173	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	321797	72130173	18224580	3367	22217	212	2								
DHX38	0	genome.wustl.edu	37	chr16	72130180	72130180	+	Missense_Mutation	SNP	C	C	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagcatgtcttcaaggctCctgctccccgcccttcatta							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72130180	72130180	C	T	SNP	DHX38	ENST00000268482	human	ensembl	69_37n	1	known	missense	c.124	p.P42S	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	47	0	0	45	8	15.09	-	-	-	T	72130180	C	T	72130180	3	4	240	1	0	0	0	0	1	0	0	0	4547	855	30	2	126	2	DHX38	16	72130180	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7	72130180	18224573	3368	22218	212	2								
DHX38	0	genome.wustl.edu	37	chr16	72132860	72132860	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtactcggatgacacgcctCtgccaactccctcctacaaa	6	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72132860	72132860	C	T	SNP	DHX38	ENST00000268482	human	ensembl	69_37n	1	known	silent	c.799	p.L267	0.998	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	74	0	0	74	19	20.43	-	-	-	T	72132860	C	T	72132860	2	4	240	1	0	0	0	0	0	0	0	1	4547	912	32	2		2	DHX38	16	72132860	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2680	72132860	18221893	3369	22219										
ZFHX3	0	genome.wustl.edu	37	chr16	72829037	72829037	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcgagctgttgaggagttGatgtgtggaggggcttgagg	20	3	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72829037	72829037	G	C	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.7544	p.S2515*	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	117	0	0	77	60	43.48	-	-	-	C	72829037	G	C	72829037	4	2	240	1	0	0	0	0	0	1	0	0	17730	1294	45	2	3575	2	ZFHX3	16	72829037	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	696177	72829037	17525716	3370	22220										
ZFHX3	0	genome.wustl.edu	37	chr16	72830632	72830632	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccgcaggagtcacactcGagcttttccaggttctctcc	9	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72830632	72830632	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.5949	p.L1983	0.175	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	37	0	0	27	23	46	-	-	-	A	72830632	G	A	72830632	2	1	240	1	0	0	0	0	0	0	0	1	17730	1045	37	1		1	ZFHX3	16	72830632	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1595	72830632	17524121	3371	22221										
ZFHX3	0	genome.wustl.edu	37	chr16	72831142	72831142	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccactggtcactggcaagctCacctcggggttaagctggaa	12	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	72831142	72831142	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.5439	p.V1813	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	70	0	0	84	56	40	-	-	-	T	72831142	C	T	72831142	2	4	240	1	0	0	0	0	0	0	0	1	17730	813	29	2		2	ZFHX3	16	72831142	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	510	72831142	17523611	3372	22222										
GLG1	0	genome.wustl.edu	37	chr16	74516973	74516973	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagagacggtgttcacagtCttctaccatcttctctgtgt	8	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	74516973	74516973	C	T	SNP	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	missense	c.1621	p.D541N	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	120	0	0	99	28	22.05	-	-	-	T	74516973	C	T	74516973	3	4	240	1	0	0	0	0	1	0	0	0	6488	913	32	2	2066	2	GLG1	16	74516973	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1685831	74516973	15837780	3373	22223										
RFWD3	0	genome.wustl.edu	37	chr16	74670336	74670336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccggcagtttcctgcctgaGatactgtgaaggtcttttgg	12	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	74670336	74670336	G	C	SNP	RFWD3	ENST00000361070	human	ensembl	69_37n	-1	known	missense	c.1334	p.S445C	1.000	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING	-	no_errors	RFWD3	HGNC	ENSG00000168411	68	0	0	39	35	47.3	-	-	-	C	74670336	G	C	74670336	3	2	240	1	0	0	0	0	1	0	0	0	13344	942	33	2	1014	2	RFWD3	16	74670336	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	153363	74670336	15684417	3374	22224										
CFDP1	0	genome.wustl.edu	37	chr16	75339017	75339017	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggacttctcaagggtgctCattttctgcttcttggcacc	9	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	75339017	75339017	C	T	SNP	CFDP1	ENST00000283882	human	ensembl	69_37n	-1	known	missense	c.714	p.M238I	1.000	pfam_BCNT	pfam_BCNT	-	no_errors	CFDP1	HGNC	ENSG00000153774	171	0	0	119	83	41.09	-	-	-	T	75339017	C	T	75339017	3	4	240	1	0	0	0	0	1	0	0	0	3311	826	29	2	193	2	CFDP1	16	75339017	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	668681	75339017	15015736	3375	22225										
ADAT1	0	genome.wustl.edu	37	chr16	75634191	75634191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggagtgtgctccaggcttCctggtaagaggacgcagcct	14	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	75634191	75634191	C	T	SNP	ADAT1	ENST00000307921	human	ensembl	69_37n	-1	known	missense	c.1432	p.E478K	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457	69	0	0	47	36	43.37	-	-	-	T	75634191	C	T	75634191	3	4	240	1	0	0	0	0	1	0	0	0	284	864	30	2	80	2	ADAT1	16	75634191	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	295174	75634191	14720562	3376	22226										
PKD1L2	0	genome.wustl.edu	37	chr16	81214872	81214872	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactggcctgcagttcctctCacagctgaaaggcagacaga	10	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	81214872	81214872	C	T	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.2002	p.E668K	0.990	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	89	0	0	56	41	42.27	-	-	-	T	81214872	C	T	81214872	3	4	240	1	0	0	0	0	1	0	0	0	12039	835	29	2	5574	2	PKD1L2	16	81214872	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5580681	81214872	9139881	3377	22227										
PKD1L2	0	genome.wustl.edu	37	chr16	81248664	81248664	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcatccctgctccagatctGaaggacgcccggcatcctgg	11	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	81248664	81248664	G	A	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.599	p.S200L	0.020	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	27	0	0	39	7	15.22	-	-	-	A	81248664	G	A	81248664	3	1	240	1	0	0	0	0	1	0	0	0	12039	1294	45	2	7013	2	PKD1L2	16	81248664	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33792	81248664	9106089	3378	22228										
HSD17B2	0	genome.wustl.edu	37	chr16	82124603	82124603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actggagctttccaagtgggGaattaaagttgcttccatcc	10	9	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	82124603	82124603	G	T	SNP	HSD17B2	ENST00000199936	human	ensembl	69_37n	1	known	missense	c.761	p.G254V	0.986	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696	83	0	0	97	20	17.09	-	-	-	T	82124603	G	T	82124603	3	4	240	1	0	0	0	0	1	0	0	0	7435	1174	41	2	775	2	HSD17B2	16	82124603	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	875939	82124603	8230150	3379	22229										
HSBP1	0	genome.wustl.edu	37	chr16	83842947	83842947	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcattgatgatctggaaaaGaatatcgcggacctcatgac	10	9	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	83842947	83842947	G	C	SNP	HSBP1	ENST00000433866	human	ensembl	69_37n	1	known	missense	c.150	p.K50N	0.750	pfam_HS1-bd	pfam_HS1-bd	-	no_errors	HSBP1	HGNC	ENSG00000230989	118	0	0	122	34	21.79	-	-	-	C	83842947	G	C	83842947	3	2	240	1	0	0	0	0	1	0	0	0	7424	933	33	2	160	2	HSBP1	16	83842947	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1718344	83842947	6511806	3380	22230										
SLC38A8	0	genome.wustl.edu	37	chr16	84066953	84066953	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgtgtatttctggaaggcGatctcccgcggggcagacag	14	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	84066953	84066953	G	A	SNP	SLC38A8	ENST00000299709	human	ensembl	69_37n	-1	known	silent	c.510	p.I170	0.999	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558	32	0	0	37	6	13.95	-	-	-	A	84066953	G	A	84066953	2	1	240	1	0	0	0	0	0	0	0	1	14699	1048	37	1		1	SLC38A8	16	84066953	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	224006	84066953	6287800	3381	22231										
ATP2C2	0	genome.wustl.edu	37	chr16	84472794	84472794	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgtggcggccattccaGagggtctgcccatcgtcgtc	14	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	84472794	84472794	G	C	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.1009	p.E337Q	0.996	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	83	0	0	113	34	23.13	-	-	-	C	84472794	G	C	84472794	3	2	240	1	0	0	0	0	1	0	0	0	1148	943	33	2	1055	2	ATP2C2	16	84472794	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	405841	84472794	5881959	3382	22232										
ATP2C2	0	genome.wustl.edu	37	chr16	84492736	84492736	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcttgcaggaatgcagtgGaggaaggcaagggtattttt	14	5	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	84492736	84492736	G	C	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.2158	p.E720Q	1.000	prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	57	0	0	62	11	15.07	-	-	-	C	84492736	G	C	84492736	3	2	240	1	0	0	0	0	1	0	0	0	1148	1175	41	2	2244	2	ATP2C2	16	84492736	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19942	84492736	5862017	3383	22233										
COTL1	0	genome.wustl.edu	37	chr16	84651123	84651123	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacctgtgcactgctggatGaagtgctggtactccgctcc	11	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	84651123	84651123	G	C	SNP	COTL1	ENST00000262428	human	ensembl	69_37n	-1	known	missense	c.144	p.F48L	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	COTL1	HGNC	ENSG00000103187	39	0	0	36	8	18.18	-	-	-	C	84651123	G	C	84651123	3	2	240	1	0	0	0	0	1	0	0	0	3791	1281	45	2	296	2	COTL1	16	84651123	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	158387	84651123	5703630	3384	22234										
ZCCHC14	0	genome.wustl.edu	37	chr16	87466736	87466736	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaaacttagcatcttacctCaaaggaacattcaacatttc	3	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	87466736	87466736	C	G	SNP	ZCCHC14	ENST00000268616	human	ensembl	69_37n	-1	known	missense	c.355	p.E119Q	1.000	superfamily_Phox	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948	241	0	0	241	34	12.36	-	-	-	G	87466736	C	G	87466736	3	3	240	1	0	0	0	0	1	0	0	0	17679	835	29	2	2538	2	ZCCHC14	16	87466736	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2815613	87466736	2888017	3385	22235										
GALNS	0	genome.wustl.edu	37	chr16	88893184	88893184	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctgtcgctgggcggcgtCaggcccgcaagggccaggct	17	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	88893184	88893184	C	G	SNP	GALNS	ENST00000268695	human	ensembl	69_37n	-1	known	silent	c.1065	p.L355	0.115	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	GALNS	HGNC	ENSG00000141012	9	0	0	21	12	36.36	-	-	-	G	88893184	C	G	88893184	2	3	240	1	0	0	0	0	0	0	0	1	6256	813	29	2		2	GALNS	16	88893184	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1426448	88893184	1461569	3386	22236										
CDH15	0	genome.wustl.edu	37	chr16	89246631	89246631	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtcggacaagcagcagctGggcagcgtcatctacagcat	12	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89246631	89246631	G	A	SNP	CDH15	ENST00000289746	human	ensembl	69_37n	1	known	silent	c.225	p.L75	0.104	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	44	0	0	40	8	16.67	-	-	-	A	89246631	G	A	89246631	2	1	240	1	0	0	0	0	0	0	0	1	3129	1335	47	4		4	CDH15	16	89246631	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	353447	89246631	1108122	3387	22237										
ANKRD11	0	genome.wustl.edu	37	chr16	89347801	89347801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgggcgtgtgcatcacctCctcgtagctggggcaggata	14	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89347801	89347801	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.5149	p.E1717K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	23	0	0	27	8	22.86	-	-	-	T	89347801	C	T	89347801	3	4	240	1	0	0	0	0	1	0	0	0	639	864	30	2	2862	2	ANKRD11	16	89347801	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	101170	89347801	1006952	3388	22238										
ANKRD11	0	genome.wustl.edu	37	chr16	89348213	89348213	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctctcgaagctggtcatCatcaggtcgccgtcccccag	9	16	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89348213	89348213	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.4737	p.M1579I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	71	0	0	85	27	24.11	-	-	-	T	89348213	C	T	89348213	3	4	240	1	0	0	0	0	1	0	0	0	639	826	29	2	3274	2	ANKRD11	16	89348213	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	412	89348213	1006540	3389	22239										
ANKRD11	0	genome.wustl.edu	37	chr16	89349094	89349094	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtactcatggagagcctcttCttccaacttttcaagcaggc	8	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89349094	89349094	C	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	nonsense	c.3856	p.E1286*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	44	0	0	68	15	18.07	-	-	-	A	89349094	C	A	89349094	4	1	240	1	0	0	0	0	0	1	0	0	639	922	32	2	4155	2	ANKRD11	16	89349094	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	881	89349094	1005659	3390	22240										
ZNF276	0	genome.wustl.edu	37	chr16	89793698	89793698	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtttctcagggcagttgggtGagaagcagcttccatcttca	12	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89793698	89793698	G	A	SNP	ZNF276	ENST00000443381	human	ensembl	69_37n	1	known	missense	c.1018	p.E340K	1.000	NULL	pfam_Znf_AD,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF276	HGNC	ENSG00000158805	153	0	0	167	48	22.33	-	-	-	A	89793698	G	A	89793698	3	1	240	1	0	0	0	0	1	0	0	0	17907	1291	45	2	1036	2	ZNF276	16	89793698	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	444604	89793698	561055	3391	22241										
ZNF276	0	genome.wustl.edu	37	chr16	89804230	89804230	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaggtgcggaactatatCtgtgacgaatgtggacaaac	12	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89804230	89804230	C	T	SNP	ZNF276	ENST00000443381	human	ensembl	69_37n	1	known	silent	c.1491	p.I497	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_AD,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF276	HGNC	ENSG00000158805	61	0	0	49	25	33.78	-	-	-	T	89804230	C	T	89804230	2	4	240	1	0	0	0	0	0	0	0	1	17907	903	32	2		2	ZNF276	16	89804230	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10532	89804230	550523	3392	22242										
FANCA	0	genome.wustl.edu	37	chr16	89828418	89828418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctccaggtgtaaccagtCttggtaagttaactgagaaa	10	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89828418	89828418	C	G	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.2791	p.D931H	1.000	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	96	0	0	89	20	18.35	-	-	-	G	89828418	C	G	89828418	3	3	240	1	0	0	0	0	1	0	0	0	5708	913	32	2	1636	2	FANCA	16	89828418	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24188	89828418	526335	3393	22243										
FANCA	0	genome.wustl.edu	37	chr16	89882362	89882362	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttaatttctgtgccctttCaggattatatttttccctct	4	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89882362	89882362	C	T	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.112	p.E38K	0.004	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	92	0	0	59	34	36.56	-	-	-	T	89882362	C	T	89882362	3	4	240	1	0	0	0	0	1	0	0	0	5708	835	29	2	4428	2	FANCA	16	89882362	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53944	89882362	472391	3394	22244										
TCF25	0	genome.wustl.edu	37	chr16	89967130	89967130	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagcagacagacctccctGagtgtgagcagagctctgcc	12	14	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	16	89967130	89967130	G	C	SNP	TCF25	ENST00000263346	human	ensembl	69_37n	1	known	missense	c.1309	p.E437Q	0.003	pfam_TCF25	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	88	0	0	105	25	19.23	-	-	-	C	89967130	G	C	89967130	3	2	240	1	0	0	0	0	1	0	0	0	15788	1291	45	2	1355	2	TCF25	16	89967130	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	84768	89967130	387623	3395	22245										
FAM57A	0	genome.wustl.edu	37	chr17	644582	644582	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtacaaggtgaatggaatCctcacgctggccaccttcct	9	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	644582	644582	C	G	SNP	FAM57A	ENST00000308278	human	ensembl	69_37n	1	known	missense	c.546	p.I182M	0.980	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57A	HGNC	ENSG00000167695	103	0	0	101	28	21.71	-	-	-	G	644582	C	G	644582	3	3	240	1	0	0	0	0	1	0	0	0	5633	845	30	2	564	2	FAM57A	17	644582	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		644582	80550628	3396	22246										
GLOD4	0	genome.wustl.edu	37	chr17	685409	685409	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggccccggcctgcaccttCatccccaggacgtcccgata	9	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	685409	685409	C	T	SNP	GLOD4	ENST00000301328	human	ensembl	69_37n	-1	known	missense	c.87	p.M29I	1.000	NULL	NULL	-	no_errors	GLOD4	HGNC	ENSG00000167699	11	0	0	2	11	84.62	-	-	-	T	685409	C	T	685409	3	4	240	1	0	0	0	0	1	0	0	0	6502	826	29	2	845	2	GLOD4	17	685409	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40827	685409	80509801	3397	22247										
NXN	0	genome.wustl.edu	37	chr17	729215	729215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttaccttctgggtcatctCggatcaccagcagcccgttc	8	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	729215	729215	C	T	SNP	NXN	ENST00000336868	human	ensembl	69_37n	-1	known	missense	c.464	p.R155Q	1.000	NULL	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693	82	0	0	93	20	17.7	-	-	-	T	729215	C	T	729215	3	4	240	1	0	0	0	0	1	0	0	0	10860	884	31	1	871	1	NXN	17	729215	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43806	729215	80465995	3398	22248										
ABR	0	genome.wustl.edu	37	chr17	959301	959301	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcttaaatcccttggcaGagtggacgatgacatgaagg	12	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	959301	959301	G	C	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.1535	p.S512C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	40	0	0	31	18	36.73	-	-	-	C	959301	G	C	959301	3	2	240	1	0	0	0	0	1	0	0	0	99	942	33	2	1084	2	ABR	17	959301	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230086	959301	80235909	3399	22249										
MYO1C	0	genome.wustl.edu	37	chr17	1383839	1383839	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctccacttcatcctcggtGaaatcaatgactgtcagagc	7	13	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	1383839	1383839	G	A	SNP	MYO1C	ENST00000359786	human	ensembl	69_37n	-1	known	silent	c.888	p.F296	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879	49	0	0	40	22	35.48	-	-	-	A	1383839	G	A	1383839	2	1	240	1	0	0	0	0	0	0	0	1	10142	1281	45	2		2	MYO1C	17	1383839	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	424538	1383839	79811371	3400	22250										
SMYD4	0	genome.wustl.edu	37	chr17	1731172	1731172	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactgaagaagtgaagaggaGtgaagaaagatatccctcaa	11	5	1	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	1731172	1731172	G	C	SNP	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	missense	c.117	p.H39Q	0.007	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	69	0	0	59	22	27.16	-	-	-	C	1731172	G	C	1731172	3	2	240	1	0	0	0	0	1	0	0	0	14913	1020	36	4	2337	4	SMYD4	17	1731172	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	347333	1731172	79464038	3401	22251										
SMG6	0	genome.wustl.edu	37	chr17	1968852	1968852	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcaggcaagagtcccgactCtcgaatcgctgctcgaggaa	12	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	1968852	1968852	C	G	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.3957	p.E1319D	1.000	smart_PINc_nuc-bd	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	40	0	0	27	6	18.18	-	-	-	G	1968852	C	G	1968852	3	3	240	1	0	0	0	0	1	0	0	0	14886	912	32	2	314	2	SMG6	17	1968852	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	237680	1968852	79226358	3402	22252										
TSR1	0	genome.wustl.edu	37	chr17	2227535	2227535	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgaagaaatctcacttttCagccagggtactggttctgg	11	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	2227535	2227535	C	T	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	silent	c.2370	p.L790	0.880	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	79	0	0	94	27	22.31	-	-	-	T	2227535	C	T	2227535	2	4	240	1	0	0	0	0	0	0	0	1	16760	813	29	2		2	TSR1	17	2227535	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	258683	2227535	78967675	3403	22253										
TSR1	0	genome.wustl.edu	37	chr17	2236308	2236308	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catatcatcatattcatattCatctccttccccaccacttt	0	15	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	2236308	2236308	C	G	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1252	p.E418Q	1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	145	0	0	96	43	30.94	-	-	-	G	2236308	C	G	2236308	3	3	240	1	0	0	0	0	1	0	0	0	16760	835	29	2	1198	2	TSR1	17	2236308	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	8773	2236308	78958902	3404	22254										
KIAA0664	0	genome.wustl.edu	37	chr17	2601777	2601777	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaagaagatgttgttccaGatgaacatctgcatcttggt	10	7	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	2601777	2601777	G	C	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.1260	p.I420M	1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	31	0	0	17	4	19.05	-	-	-	C	2601777	G	C	2601777	3	2	240	1	0	0	0	0	1	0	0	0	8241	932	33	2	2737	2	KIAA0664	17	2601777	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	365469	2601777	78593433	3405	22255										
OR3A2	0	genome.wustl.edu	37	chr17	3181519	3181519	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcggccctccactgaacgGattcgtagaactgcagctgc	10	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3181519	3181519	G	A	SNP	OR3A2	ENST00000408891	human	ensembl	69_37n	-1	known	silent	c.711	p.I237	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR3A2	HGNC	ENSG00000221882	40	0	0	43	14	24.56	-	-	-	A	3181519	G	A	3181519	2	1	240	1	0	0	0	0	0	0	0	1	11111	1164	41	2		2	OR3A2	17	3181519	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	579742	3181519	78013691	3406	22256										
OR3A2	0	genome.wustl.edu	37	chr17	3181564	3181564	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgtaggcagtgatgatGagaaccaaaggtgtgcctgc	15	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3181564	3181564	G	A	SNP	OR3A2	ENST00000408891	human	ensembl	69_37n	-1	known	silent	c.666	p.L222	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR3A2	HGNC	ENSG00000221882	57	0	0	59	16	21.33	-	-	-	A	3181564	G	A	3181564	2	1	240	1	0	0	0	0	0	0	0	1	11111	1277	45	2		2	OR3A2	17	3181564	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45	3181564	78013646	3407	22257										
OR1E1	0	genome.wustl.edu	37	chr17	3300920	3300920	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtagaactattagctgatGagcataagtagagaccaata	10	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3300920	3300920	G	C	SNP	OR1E1	ENST00000322608	human	ensembl	69_37n	-1	known	nonsense	c.785	p.S262*	0.245	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1E1	HGNC	ENSG00000180016	81	0	0	51	11	17.46	-	-	-	C	3300920	G	C	3300920	4	2	240	1	0	0	0	0	0	1	0	0	11027	1294	45	2	163	2	OR1E1	17	3300920	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	119356	3300920	77894290	3408	22258										
ASPA	0	genome.wustl.edu	37	chr17	3379679	3379679	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaatcgcatttttgaccttGaaaatcttgggtaagactat	8	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3379679	3379679	G	T	SNP	ASPA	ENST00000263080	human	ensembl	69_37n	1	known	nonsense	c.226	p.E76*	1.000	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ASPA	HGNC	ENSG00000108381	129	0	0	98	35	26.32	-	-	-	T	3379679	G	T	3379679	4	4	240	1	0	0	0	0	0	1	0	0	1054	1291	45	2	228	2	ASPA	17	3379679	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	78759	3379679	77815531	3409	22259										
C17orf85	0	genome.wustl.edu	37	chr17	3721701	3721701	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctggcactggatcgtctaGacgcgctccgctcccggggc	14	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3721701	3721701	G	C	SNP	C17orf85	ENST00000389005	human	ensembl	69_37n	-1	known	missense	c.1166	p.S389C	0.116	NULL	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356	73	0	0	51	16	23.88	-	-	-	C	3721701	G	C	3721701	3	2	240	1	0	0	0	0	1	0	0	0	1904	942	33	2	712	2	C17orf85	17	3721701	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	342022	3721701	77473509	3410	22260										
C17orf85	0	genome.wustl.edu	37	chr17	3732634	3732634	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatctactccgcaaatataGattgtctccagtctcacctt	4	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3732634	3732634	G	C	SNP	C17orf85	ENST00000389005	human	ensembl	69_37n	-1	known	missense	c.384	p.I128M	1.000	pfam_DUF2414	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356	93	0	0	81	27	25	-	-	-	C	3732634	G	C	3732634	3	2	240	1	0	0	0	0	1	0	0	0	1904	932	33	2	1518	2	C17orf85	17	3732634	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10933	3732634	77462576	3411	22261										
ZZEF1	0	genome.wustl.edu	37	chr17	3954097	3954097	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccctgatgagccttcatCagacagtccccgacgagctg	9	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	3954097	3954097	C	G	SNP	ZZEF1	ENST00000573183	human	ensembl	69_37n	-1	putative	nonstop	c.1004	p.*335S	1.000	NULL	pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZZEF1	HGNC	ENSG00000074755	36	0	0	35	11	23.91	-	-	-	G	3954097	C	G	3954097	4	3	240	1	0	0	0	0	0	0	0	0	18346	813	29	2	3124	2	ZZEF1	17	3954097	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	221463	3954097	77241113	3412	22262										
ZZEF1	0	genome.wustl.edu	37	chr17	4017735	4017735	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacttgagtttatccatctCtggacttctagttagatctc	7	9	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4017735	4017735	C	G	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.724	p.E242Q	1.000	superfamily_Galactose-bd-like	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	91	0	0	87	26	23.01	-	-	-	G	4017735	C	G	4017735	3	3	240	1	0	0	0	0	1	0	0	0	18346	922	32	2	8369	2	ZZEF1	17	4017735	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63638	4017735	77177475	3413	22263										
SPNS3	0	genome.wustl.edu	37	chr17	4356369	4356369	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggggtcatcttgggggcaGaagctgcgaggaggtacaag	18	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4356369	4356369	G	A	SNP	SPNS3	ENST00000355530	human	ensembl	69_37n	1	known	missense	c.982	p.E328K	0.756	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS3	HGNC	ENSG00000182557	64	0	0	29	38	56.72	-	-	-	A	4356369	G	A	4356369	3	1	240	1	0	0	0	0	1	0	0	0	15167	943	33	2	1012	2	SPNS3	17	4356369	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338634	4356369	76838841	3414	22264										
MYBBP1A	0	genome.wustl.edu	37	chr17	4448189	4448189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggcctcatcccccagctCctcctcgttctcactgtcct	5	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4448189	4448189	C	T	SNP	MYBBP1A	ENST00000381556	human	ensembl	69_37n	-1	known	missense	c.2338	p.E780K	0.941	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382	31	0	0	13	6	31.58	-	-	-	T	4448189	C	T	4448189	3	4	240	1	0	0	0	0	1	0	0	0	10080	864	30	2	1724	2	MYBBP1A	17	4448189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	91820	4448189	76747021	3415	22265										
MYBBP1A	0	genome.wustl.edu	37	chr17	4451590	4451590	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctgcttgaactgcgtgctGagggtctgcaacagactggg	15	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4451590	4451590	G	A	SNP	MYBBP1A	ENST00000573116	human	ensembl	69_37n	-1	known	nonsense	c.1330	p.Q444*	0.987	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYBBP1A	HGNC	ENSG00000132382	26	0	0	18	8	30.77	-	-	-	A	4451590	G	A	4451590	4	1	240	1	0	0	0	0	0	1	0	0	10080	1277	45	2	2514	2	MYBBP1A	17	4451590	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3401	4451590	76743620	3416	22266										
ZMYND15	0	genome.wustl.edu	37	chr17	4644970	4644970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctagtggatggagcccaggGaaccgcaagctggggctcag	17	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4644970	4644970	G	A	SNP	ZMYND15	ENST00000433935	human	ensembl	69_37n	1	known	missense	c.686	p.G229E	0.158	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497	81	0	0	52	50	49.02	-	-	-	A	4644970	G	A	4644970	3	1	240	1	0	0	0	0	1	0	0	0	17804	1174	41	2	692	2	ZMYND15	17	4644970	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	193380	4644970	76550240	3417	22267										
ZMYND15	0	genome.wustl.edu	37	chr17	4647380	4647380	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaccgtgtactacgtcatCacccacctggtgccccagtc	8	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4647380	4647380	C	T	SNP	ZMYND15	ENST00000433935	human	ensembl	69_37n	1	known	silent	c.1473	p.I491	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497	90	0	0	63	23	26.74	-	-	-	T	4647380	C	T	4647380	2	4	240	1	0	0	0	0	0	0	0	1	17804	816	29	2		2	ZMYND15	17	4647380	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2410	4647380	76547830	3418	22268										
VMO1	0	genome.wustl.edu	37	chr17	4689248	4689248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaccttccagactgggactCtaccacgtgcgtattgccta	8	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4689248	4689248	C	G	SNP	VMO1	ENST00000328739	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	0.998	pfam_VOMI,superfamily_VOMI	pfam_VOMI,superfamily_VOMI	-	no_errors	VMO1	HGNC	ENSG00000182853	26	0	0	36	14	28	-	-	-	G	4689248	C	G	4689248	3	3	240	1	0	0	0	0	1	0	0	0	17274	922	32	2	355	2	VMO1	17	4689248	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41868	4689248	76505962	3419	22269										
PLD2	0	genome.wustl.edu	37	chr17	4711584	4711584	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaggtgggaacctgcactCtgtattctgtccgcttgact	10	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4711584	4711584	C	T	SNP	PLD2	ENST00000263088	human	ensembl	69_37n	1	known	silent	c.256	p.L86	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219	59	0	0	45	10	18.18	-	-	-	T	4711584	C	T	4711584	2	4	240	1	0	0	0	0	0	0	0	1	12120	912	32	2		2	PLD2	17	4711584	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22336	4711584	76483626	3420	22270										
MINK1	0	genome.wustl.edu	37	chr17	4784433	4784433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccatctgcttaggacgagGaggaagagatcaaacaggag	13	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4784433	4784433	G	A	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	missense	c.187	p.E63K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	99	0	0	96	29	23.2	-	-	-	A	4784433	G	A	4784433	3	1	240	1	0	0	0	0	1	0	0	0	9658	1175	41	2		2	MINK1	17	4784433	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	72849	4784433	76410777	3421	22271										
SPAG7	0	genome.wustl.edu	37	chr17	4862849	4862849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctaggaggttggcggcaactCttccccactctgccgcagac	11	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4862849	4862849	C	T	SNP	SPAG7	ENST00000206020	human	ensembl	69_37n	-1	known	missense	c.664	p.E222K	1.000	pirsf_Sperm-assoc_antigen_PAG7	pfam_R3H_ss-bd,smart_R3H_ss-bd,pirsf_Sperm-assoc_antigen_PAG7,pfscan_R3H_ss-bd	-	no_errors	SPAG7	HGNC	ENSG00000091640	30	0	0	25	12	32.43	-	-	-	T	4862849	C	T	4862849	3	4	240	1	0	0	0	0	1	0	0	0	15074	922	32	2	23	2	SPAG7	17	4862849	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	78416	4862849	76332361	3422	22272										
CAMTA2	0	genome.wustl.edu	37	chr17	4881837	4881837	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacaccaggctggacaagtGaggctggcactgcgatgtga	15	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4881837	4881837	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.1796	p.S599L	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	44	0	0	33	6	15.38	-	-	-	A	4881837	G	A	4881837	3	1	240	1	0	0	0	0	1	0	0	0	2639	1294	45	2	1987	2	CAMTA2	17	4881837	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18988	4881837	76313373	3423	22273										
KIF1C	0	genome.wustl.edu	37	chr17	4903598	4903598	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggccctttaacgcccgtgaGaccagccaggatgccaagtg	12	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4903598	4903598	G	A	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	silent	c.57	p.E19	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	62	0	0	49	13	20.97	-	-	-	A	4903598	G	A	4903598	2	1	240	1	0	0	0	0	0	0	0	1	8337	933	33	2		2	KIF1C	17	4903598	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21761	4903598	76291612	3424	22274										
KIF1C	0	genome.wustl.edu	37	chr17	4905812	4905812	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgagacctcttgaaccccaaGagtcggggttctctgcgggt	13	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4905812	4905812	G	C	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	missense	c.483	p.K161N	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	53	0	0	42	30	40.54	-	-	-	C	4905812	G	C	4905812	3	2	240	1	0	0	0	0	1	0	0	0	8337	933	33	2	501	2	KIF1C	17	4905812	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2214	4905812	76289398	3425	22275										
ZFP3	0	genome.wustl.edu	37	chr17	4995790	4995790	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatccggcatcagagaattCatacaggggacaaaccctat	8	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	4995790	4995790	C	T	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	1	known	missense	c.991	p.H331Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	49	0	0	33	6	15.38	-	-	-	T	4995790	C	T	4995790	3	4	240	1	0	0	0	0	1	0	0	0	17739	826	29	2	993	2	ZFP3	17	4995790	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89978	4995790	76199420	3426	22276										
MIS12	0	genome.wustl.edu	37	chr17	5392473	5392473	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacgtattccctcaaacatCttgcttcctgaagataaatg	5	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	5392473	5392473	C	G	SNP	MIS12	ENST00000381165	human	ensembl	69_37n	1	known	missense	c.291	p.I97M	1.000	pfam_Centromere_Mis12	pfam_Centromere_Mis12	-	no_errors	MIS12	HGNC	ENSG00000167842	49	0	0	36	11	23.4	-	-	-	G	5392473	C	G	5392473	3	3	240	1	0	0	0	0	1	0	0	0	9665	903	32	2	293	2	MIS12	17	5392473	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	396683	5392473	75802737	3427	22277										
ALOX12	0	genome.wustl.edu	37	chr17	6913149	6913149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtgcactgcccagcatgccGccatcaaccagggccaggta	11	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	6913149	6913149	G	A	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.1624	p.A542T	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	83	0	0	96	34	26.15	-	-	-	A	6913149	G	A	6913149	3	1	240	1	0	0	0	0	1	0	0	0	536	1087	38	1	1670	1	ALOX12	17	6913149	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1520676	6913149	74282061	3428	22278										
C17orf49	0	genome.wustl.edu	37	chr17	6920285	6920285	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtgacgtggtggatattGaagggctaggagaaactcct	14	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	6920285	6920285	G	C	SNP	C17orf49	ENST00000546495	human	ensembl	69_37n	1	known	missense	c.466	p.E156Q	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	C17orf49	Clone_based_vega_gene	ENSG00000258315	59	0	0	63	8	11.27	-	-	-	C	6920285	G	C	6920285	3	2	240	1	0	0	0	0	1	0	0	0	1875	1291	45	2	484	2	C17orf49	17	6920285	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7136	6920285	74274925	3429	22279										
DLG4	0	genome.wustl.edu	37	chr17	7096884	7096884	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggtgggcccaaggatgatGatggggcgagcatagtgcac	17	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7096884	7096884	G	A	SNP	DLG4	ENST00000293813	human	ensembl	69_37n	-1	known	silent	c.1740	p.I580	1.000	pfam_Guanylate_kin,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,pfam_L27_1,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG4	HGNC	ENSG00000132535	103	0	0	64	15	18.99	-	-	-	A	7096884	G	A	7096884	2	1	240	1	0	0	0	0	0	0	0	1	4593	1280	45	2		2	DLG4	17	7096884	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	176599	7096884	74098326	3430	22280										
ACADVL	0	genome.wustl.edu	37	chr17	7124101	7124101	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagtgctcaacgaagagcaGacacagtttcttaaagagct	10	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7124101	7124101	G	C	SNP	ACADVL	ENST00000356839	human	ensembl	69_37n	1	known	missense	c.294	p.Q98H	0.992	superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADVL	HGNC	ENSG00000072778	71	0	0	67	23	25.27	-	-	-	C	7124101	G	C	7124101	3	2	240	1	0	0	0	0	1	0	0	0	116	933	33	2	312	2	ACADVL	17	7124101	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27217	7124101	74071109	3431	22281										
ACADVL	0	genome.wustl.edu	37	chr17	7124146	7124146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagcctgtgtcccgtttcttCgaggtaaggaatgactcggg	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7124146	7124146	C	T	SNP	ACADVL	ENST00000581378	human	ensembl	69_37n	1	known	missense	c.38	p.S13L	0.995	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACADVL	HGNC	ENSG00000072778	83	0	0	90	27	23.08	-	-	-	T	7124146	C	T	7124146	3	4	240	1	0	0	0	0	1	0	0	0	116	883	31	1	357	1	ACADVL	17	7124146	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45	7124146	74071064	3432	22282										
FGF11	0	genome.wustl.edu	37	chr17	7344851	7344851	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggtttctacctccaggcGaatcccgacggaagcatcca	10	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7344851	7344851	G	A	SNP	FGF11	ENST00000293829	human	ensembl	69_37n	1	known	silent	c.255	p.A85	0.982	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF11	HGNC	ENSG00000161958	74	0	0	44	15	25.42	-	-	-	A	7344851	G	A	7344851	2	1	240	1	0	0	0	0	0	0	0	1	5886	1045	37	1		1	FGF11	17	7344851	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	220705	7344851	73850359	3433	22283										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7460135	7460135	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgggaggaagccagaatCaacagctccagccctctgcg	13	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7460135	7460135	C	G	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	missense	c.414	p.I138M	1.000	pfam_TNF,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	39	0	0	26	9	25.71	-	-	-	G	7460135	C	G	7460135	3	3	240	1	0	0	0	0	1	0	0	0	16399	816	29	2	436	2	TNFSF12-TNFSF13	17	7460135	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	115284	7460135	73735075	3434	22284										
CD68	0	genome.wustl.edu	37	chr17	7483154	7483154	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggacagggaatgactgtcctCacaaaaaatcagctactttg	9	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7483154	7483154	C	T	SNP	CD68	ENST00000250092	human	ensembl	69_37n	1	known	missense	c.76	p.H26Y	0.996	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	CD68	HGNC	ENSG00000129226	131	0	0	93	70	42.94	-	-	-	T	7483154	C	T	7483154	3	4	240	1	0	0	0	0	1	0	0	0	3059	826	29	2	82	2	CD68	17	7483154	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	23019	7483154	73712056	3435	22285										
ATP1B2	0	genome.wustl.edu	37	chr17	7556729	7556729	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacctcgttttttatgggttCctcaccgccatgttcaccct	6	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7556729	7556729	C	T	SNP	ATP1B2	ENST00000250111	human	ensembl	69_37n	1	known	silent	c.150	p.F50	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B2	HGNC	ENSG00000129244	110	0	0	85	29	25.44	-	-	-	T	7556729	C	T	7556729	2	4	240	1	0	0	0	0	0	0	0	1	1137	854	30	2		2	ATP1B2	17	7556729	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	73575	7556729	73638481	3436	22286										
DNAH2	0	genome.wustl.edu	37	chr17	7696522	7696522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagaccatcaagtacattcGagtaagcctcgctagagtct	9	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7696522	7696522	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.7568	p.R2523Q	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	39	0	0	37	15	28.85	-	-	-	A	7696522	G	A	7696522	3	1	240	1	0	0	0	0	1	0	0	0	4638	1072	37	1	7754	1	DNAH2	17	7696522	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	139793	7696522	73498688	3437	22287										
DNAH2	0	genome.wustl.edu	37	chr17	7726791	7726791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagggccaaatggacaatcCatgtagtagctggcttgcag	14	8	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7726791	7726791	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.11174	p.P3725L	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	64	0	0	51	12	19.05	-	-	-	T	7726791	C	T	7726791	3	4	240	1	0	0	0	0	1	0	0	0	4638	594	21	4	11464	4	DNAH2	17	7726791	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30269	7726791	73468419	3438	22288										
CYB5D1	0	genome.wustl.edu	37	chr17	7761522	7761522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgctatttcacgccggcgGaggtggcccaacataacagg	13	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7761522	7761522	G	A	SNP	CYB5D1	ENST00000332439	human	ensembl	69_37n	1	known	missense	c.70	p.E24K	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5	-	no_errors	CYB5D1	HGNC	ENSG00000182224	50	0	0	38	8	17.39	-	-	-	A	7761522	G	A	7761522	3	1	240	1	0	0	0	0	1	0	0	0	4155	1175	41	2	72	2	CYB5D1	17	7761522	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	34731	7761522	73433688	3439	22289										
CHD3	0	genome.wustl.edu	37	chr17	7801884	7801884	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagaaggagctacagggtGatgggcctcccagttctccc	13	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7801884	7801884	G	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.2122	p.D708N	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	87	0	0	77	18	18.95	-	-	-	A	7801884	G	A	7801884	3	1	240	1	0	0	0	0	1	0	0	0	3355	1290	45	2	2453	2	CHD3	17	7801884	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40362	7801884	73393326	3440	22290										
CNTROB	0	genome.wustl.edu	37	chr17	7851261	7851261	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacagtgccccagaacaatGagaacccttctgtcgacctg	9	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7851261	7851261	G	A	SNP	CNTROB	ENST00000380262	human	ensembl	69_37n	1	known	missense	c.2173	p.E725K	0.071	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037	49	0	0	64	14	17.95	-	-	-	A	7851261	G	A	7851261	3	1	240	1	0	0	0	0	1	0	0	0	3681	1291	45	2	2231	2	CNTROB	17	7851261	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49377	7851261	73343949	3441	22291										
GUCY2D	0	genome.wustl.edu	37	chr17	7916567	7916567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgctggagctcactcccGagggtaaggctgccctgtgc	13	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	7916567	7916567	G	A	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	missense	c.2260	p.E754K	0.419	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	27	0	0	35	8	18.6	-	-	-	A	7916567	G	A	7916567	3	1	240	1	0	0	0	0	1	0	0	0	6948	1059	37	1	2298	1	GUCY2D	17	7916567	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	65306	7916567	73278643	3442	22292										
ALOXE3	0	genome.wustl.edu	37	chr17	8018965	8018965	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggagctcccgtgtcctgtGatccaggaggaggggaagag	17	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8018965	8018965	G	A	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	missense	c.790	p.H264Y	1.000	superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	99	0	0	71	22	23.66	-	-	-	A	8018965	G	A	8018965	3	1	240	1	0	0	0	0	1	0	0	0	542	1290	45	2	1793	2	ALOXE3	17	8018965	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	102398	8018965	73176245	3443	22293										
PER1	0	genome.wustl.edu	37	chr17	8046020	8046020	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggagcctgaaccagacccaGagcccaagccagagcccaag	12	15	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8046020	8046020	G	C	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.3206	p.S1069C	1.000	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	36	0	0	34	11	24.44	-	-	-	C	8046020	G	C	8046020	3	2	240	1	0	0	0	0	1	0	0	0	11802	942	33	2	682	2	PER1	17	8046020	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27055	8046020	73149190	3444	22294										
PER1	0	genome.wustl.edu	37	chr17	8051506	8051506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcctatcctcacctttcatCcacatcctggaagaggcagc	7	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8051506	8051506	C	G	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.1120	p.D374H	1.000	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	50	0	0	39	13	25	-	-	-	G	8051506	C	G	8051506	3	3	240	1	0	0	0	0	1	0	0	0	11802	855	30	2	2812	2	PER1	17	8051506	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5486	8051506	73143704	3445	22295										
C17orf59	0	genome.wustl.edu	37	chr17	8092474	8092474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaccggctgcagagcccgctCcagctcctcgcagcgcgcca	11	19	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8092474	8092474	C	T	SNP	C17orf59	ENST00000389017	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	1.000	pfam_DUF2365	pfam_DUF2365	-	no_errors	C17orf59	HGNC	ENSG00000196544	19	0	0	8	9	52.94	-	-	-	T	8092474	C	T	8092474	3	4	240	1	0	0	0	0	1	0	0	0	1882	864	30	2	92	2	C17orf59	17	8092474	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40968	8092474	73102736	3446	22296										
RANGRF	0	genome.wustl.edu	37	chr17	8192698	8192698	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaagaagcctgggtcctctCtggcaagcagcagatagcta	11	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8192698	8192698	C	A	SNP	RANGRF	ENST00000226105	human	ensembl	69_37n	1	known	missense	c.317	p.S106Y	1.000	pfam_Mog1,superfamily_Mog1/PsbP/DUF1795_a/b/a-sand	pfam_Mog1,superfamily_Mog1/PsbP/DUF1795_a/b/a-sand	-	no_errors	RANGRF	HGNC	ENSG00000108961	61	0	0	52	13	20	-	-	-	A	8192698	C	A	8192698	3	1	240	1	0	0	0	0	1	0	0	0	13117	913	32	2	327	2	RANGRF	17	8192698	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100224	8192698	73002512	3447	22297										
ARHGEF15	0	genome.wustl.edu	37	chr17	8216854	8216854	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagctcctcagaatactcctCcagcaactgtggaggggagg	12	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8216854	8216854	C	G	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.970	p.P324A	0.715	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	97	0	0	102	29	22.14	-	-	-	G	8216854	C	G	8216854	3	3	240	1	0	0	0	0	1	0	0	0	900	855	30	2	980	2	ARHGEF15	17	8216854	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24156	8216854	72978356	3448	22298										
ARHGEF15	0	genome.wustl.edu	37	chr17	8222226	8222226	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctcatcactcagcctaaGaggtgagtcctagggaagga	12	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8222226	8222226	G	C	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.2031	p.K677N	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	43	0	0	32	13	28.89	-	-	-	C	8222226	G	C	8222226	3	2	240	1	0	0	0	0	1	0	0	0	900	933	33	2	2073	2	ARHGEF15	17	8222226	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5372	8222226	72972984	3449	22299										
ARHGEF15	0	genome.wustl.edu	37	chr17	8222653	8222653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacatgcagcgctggctggGagccttcccaaccccaggcc	12	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8222653	8222653	G	C	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.2210	p.G737A	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	40	0	0	29	13	30.95	-	-	-	C	8222653	G	C	8222653	3	2	240	1	0	0	0	0	1	0	0	0	900	1174	41	2	2260	2	ARHGEF15	17	8222653	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	427	8222653	72972557	3450	22300										
MYH10	0	genome.wustl.edu	37	chr17	8395802	8395802	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcttcggcatagcgagcaGagatgctcttctcttctgct	10	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8395802	8395802	G	C	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.4454	p.S1485C	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	42	0	0	36	7	16.28	-	-	-	C	8395802	G	C	8395802	3	2	240	1	0	0	0	0	1	0	0	0	10102	942	33	2	1579	2	MYH10	17	8395802	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	173149	8395802	72799408	3451	22301										
PIK3R5	0	genome.wustl.edu	37	chr17	8789614	8789614	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtggatgaagatctctgtcGtcttctccccagtgatgaag	11	9	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	8789614	8789614	G	C	SNP	PIK3R5	ENST00000447110	human	ensembl	69_37n	-1	known	missense	c.2060	p.T687R	0.222	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	44	0	0	64	9	12.33	-	-	-	C	8789614	G	C	8789614	3	2	240	1	0	0	0	0	1	0	0	0	11996	1145	40	3	606	3	PIK3R5	17	8789614	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	393812	8789614	72405596	3452	22302										
WDR16	0	genome.wustl.edu	37	chr17	9487654	9487654	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgcctgtggaaagaggtgtCaccatgaaaggtcccaggct	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	9487654	9487654	C	T	SNP	WDR16	ENST00000299764	human	ensembl	69_37n	1	known	silent	c.66	p.V22	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596	92	0	0	38	7	15.56	-	-	-	T	9487654	C	T	9487654	2	4	240	1	0	0	0	0	0	0	0	1	17373	841	29	2		2	WDR16	17	9487654	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	698040	9487654	71707556	3453	22303										
MYH13	0	genome.wustl.edu	37	chr17	10209931	10209931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgttccttctttagctcctCagccatcatggcagcctggt	8	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	10209931	10209931	C	G	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.5311	p.E1771Q	0.998	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	141	0	0	107	31	22.3	-	-	-	G	10209931	C	G	10209931	3	3	240	1	0	0	0	0	1	0	0	0	10104	835	29	2	525	2	MYH13	17	10209931	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	722277	10209931	70985279	3454	22304										
MYH1	0	genome.wustl.edu	37	chr17	10399350	10399350	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcctctctgtctgttccaGagtggcccgcagctcctcga	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	10399350	10399350	G	C	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.5086	p.L1696V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	154	0	0	121	31	20.39	-	-	-	C	10399350	G	C	10399350	3	2	240	1	0	0	0	0	1	0	0	0	10101	933	33	2	757	2	MYH1	17	10399350	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	189419	10399350	70795860	3455	22305										
MYH1	0	genome.wustl.edu	37	chr17	10409217	10409217	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaccgttacacctcagctGatgcaggacaagctcatgct	8	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	10409217	10409217	G	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	nonsense	c.2086	p.Q696*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	104	0	0	98	25	20.33	-	-	-	A	10409217	G	A	10409217	4	1	240	1	0	0	0	0	0	1	0	0	10101	1299	45	2	3821	2	MYH1	17	10409217	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9867	10409217	70785993	3456	22306										
DNAH9	0	genome.wustl.edu	37	chr17	11568216	11568216	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacttatgttaactctattGacaatttgttgctgaatgga	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	11568216	11568216	G	C	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.2662	p.D888H	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	167	0	0	96	36	27.27	-	-	-	C	11568216	G	C	11568216	3	2	240	1	0	0	0	0	1	0	0	0	4643	1290	45	2	2720	2	DNAH9	17	11568216	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1158999	11568216	69626994	3457	22307										
DNAH9	0	genome.wustl.edu	37	chr17	11584123	11584123	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccactgcaggcaaatgaagtGacactcctccgccagaggtg	11	13	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	11584123	11584123	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.3660	p.V1220	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	53	0	0	37	9	19.57	-	-	-	A	11584123	G	A	11584123	2	1	240	1	0	0	0	0	0	0	0	1	4643	1277	45	2		2	DNAH9	17	11584123	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15907	11584123	69611087	3458	22308										
MYOCD	0	genome.wustl.edu	37	chr17	12649336	12649336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagtttttctggacaaactGgtgtctcttctttcaaacca	6	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	12649336	12649336	G	T	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.1072	p.G358C	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	108	0	0	71	21	22.83	-	-	-	T	12649336	G	T	12649336	3	4	240	1	0	0	0	0	1	0	0	0	10159	1348	47	4	1106	4	MYOCD	17	12649336	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1065213	12649336	68545874	3459	22309										
MYOCD	0	genome.wustl.edu	37	chr17	12656371	12656371	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcccaagtacctgtgaaaaGacaaagcagcagctcagagt	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	12656371	12656371	G	C	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.1766	p.R589T	0.016	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	47	0	0	43	12	21.82	-	-	-	C	12656371	G	C	12656371	3	2	240	1	0	0	0	0	1	0	0	0	10159	942	33	2	1804	2	MYOCD	17	12656371	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7035	12656371	68538839	3460	22310										
MYOCD	0	genome.wustl.edu	37	chr17	12659801	12659801	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcctccacccgcccttctCtggagcccaagcagacagca	8	19	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	12659801	12659801	C	G	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.2129	p.S710C	0.962	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	51	0	0	37	11	22.92	-	-	-	G	12659801	C	G	12659801	3	3	240	1	0	0	0	0	1	0	0	0	10159	913	32	2	2171	2	MYOCD	17	12659801	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3430	12659801	68535409	3461	22311										
MYOCD	0	genome.wustl.edu	37	chr17	12666389	12666389	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatcgtgtattgcccacaGaaatgccagcagacgctaga	9	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	12666389	12666389	G	A	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	splice_site	c.2390-1	e14-1	1.000	-	-	-	no_errors	MYOCD	HGNC	ENSG00000141052	31	0	0	4	11	73.33	-	-	-	A	12666389	G	A	12666389	5	1	240	1	0	0	0	0	0	0	1	0	10159	956	33	2	2455	2	MYOCD	17	12666389	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6588	12666389	68528821	3462	22312										
HS3ST3B1	0	genome.wustl.edu	37	chr17	14248768	14248768	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcacggacaagcacttCtacttcaacaagaccaaggg	7	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	14248768	14248768	C	G	SNP	HS3ST3B1	ENST00000360954	human	ensembl	69_37n	1	known	missense	c.978	p.F326L	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST3B1	HGNC	ENSG00000125430	14	0	0	7	4	36.36	-	-	-	G	14248768	C	G	14248768	3	3	240	1	0	0	0	0	1	0	0	0	7417	912	32	2	984	2	HS3ST3B1	17	14248768	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1582379	14248768	66946442	3463	22313										
TEKT3	0	genome.wustl.edu	37	chr17	15234430	15234430	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaactcatgaatgatttcaGatttccaaaaccctatgtca	4	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	15234430	15234430	G	T	SNP	TEKT3	ENST00000338696	human	ensembl	69_37n	-1	known	missense	c.473	p.S158Y	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409	238	0	0	168	72	30	-	-	-	T	15234430	G	T	15234430	3	4	240	1	0	0	0	0	1	0	0	0	15849	942	33	2	1027	2	TEKT3	17	15234430	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	985662	15234430	65960780	3464	22314										
TBC1D26	0	genome.wustl.edu	37	chr17	15642040	15642040	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccctgccctacaggtcatGaaggagaagggcaagaggtc	15	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	15642040	15642040	G	A	SNP	TBC1D26	ENST00000437605	human	ensembl	69_37n	1	known	missense	c.393	p.M131I	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946	200	1	0.5	188	34	15.32	-	-	-	A	15642040	G	A	15642040	3	1	240	1	0	0	0	0	1	0	0	0	15708	1290	45	2	415	2	TBC1D26	17	15642040	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	407610	15642040	65553170	3465	22315										
RASD1	0	genome.wustl.edu	37	chr17	17398810	17398810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccaccagctgctcgatctCgcgctggtccacctcgcggt	11	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	17398810	17398810	C	T	SNP	RASD1	ENST00000225688	human	ensembl	69_37n	-1	known	missense	c.475	p.E159K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD1	HGNC	ENSG00000108551	14	0	0	16	14	46.67	-	-	-	T	17398810	C	T	17398810	3	4	240	1	0	0	0	0	1	0	0	0	13149	893	31	1	374	1	RASD1	17	17398810	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1756770	17398810	63796400	3466	22316										
ALKBH5	0	genome.wustl.edu	37	chr17	18110154	18110154	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattagatgcaccccggttgGaaacaaagtccctgagcagc	11	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18110154	18110154	G	C	SNP	ALKBH5	ENST00000399138	human	ensembl	69_37n	1	known	missense	c.877	p.E293Q	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542	63	0	0	56	15	21.13	-	-	-	C	18110154	G	C	18110154	3	2	240	1	0	0	0	0	1	0	0	0	530	1175	41	2	887	2	ALKBH5	17	18110154	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	711344	18110154	63085056	3467	22317										
FLII	0	genome.wustl.edu	37	chr17	18148916	18148916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatcatctgccaggtcatCttggcaaaagtcggagcatt	10	10	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18148916	18148916	C	G	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.3562	p.D1188H	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	117	0	0	109	41	27.33	-	-	-	G	18148916	C	G	18148916	3	3	240	1	0	0	0	0	1	0	0	0	5971	913	32	2	259	2	FLII	17	18148916	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38762	18148916	63046294	3468	22318										
FLII	0	genome.wustl.edu	37	chr17	18149711	18149711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctcttgccccggtggatGatgaacttcctcttgaaatg	9	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18149711	18149711	G	A	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	silent	c.3117	p.I1039	0.997	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	119	0	0	87	22	20.18	-	-	-	A	18149711	G	A	18149711	2	1	240	1	0	0	0	0	0	0	0	1	5971	1280	45	2		2	FLII	17	18149711	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	795	18149711	63045499	3469	22319										
ZNF286B	0	genome.wustl.edu	37	chr17	18565275	18565275	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgctcttcagtgtgaactCtttgatgtctgatgagagat	11	6	4	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18565275	18565275	C	G	SNP	ZNF286B	ENST00000545289	human	ensembl	69_37n	-1	known	missense	c.1544	p.R515T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459	142	0	0	107	14	11.57	-	-	-	G	18565275	C	G	18565275	3	3	240	1	0	0	0	0	1	0	0	0	17920	913	32	2	28	2	ZNF286B	17	18565275	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	415564	18565275	62629935	3470	22320										
ZNF286B	0	genome.wustl.edu	37	chr17	18565511	18565511	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcactacactcatagggtttCtctccagtgtgaattctctg	7	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18565511	18565511	C	G	SNP	ZNF286B	ENST00000545289	human	ensembl	69_37n	-1	known	missense	c.1308	p.E436D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459	119	0	0	77	24	23.76	-	-	-	G	18565511	C	G	18565511	3	3	240	1	0	0	0	0	1	0	0	0	17920	912	32	2	264	2	ZNF286B	17	18565511	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	236	18565511	62629699	3471	22321										
PRPSAP2	0	genome.wustl.edu	37	chr17	18832250	18832250	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgacgccccccggcggattGaagagtctgccattgatgag	13	12	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18832250	18832250	G	C	SNP	PRPSAP2	ENST00000268835	human	ensembl	69_37n	1	known	missense	c.931	p.E311Q	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127	61	0	0	49	16	24.62	-	-	-	C	18832250	G	C	18832250	3	2	240	1	0	0	0	0	1	0	0	0	12663	1291	45	2	965	2	PRPSAP2	17	18832250	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	266739	18832250	62362960	3472	22322										
SLC5A10	0	genome.wustl.edu	37	chr17	18922811	18922811	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactccaacagcgggcaactCttcatctacatgcagtcagt	8	13	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	18922811	18922811	C	T	SNP	SLC5A10	ENST00000395647	human	ensembl	69_37n	1	known	silent	c.1365	p.L455	0.995	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025	41	0	0	36	7	16.28	-	-	-	T	18922811	C	T	18922811	2	4	240	1	0	0	0	0	0	0	0	1	14751	900	32	2		2	SLC5A10	17	18922811	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	90561	18922811	62272399	3473	22323										
ULK2	0	genome.wustl.edu	37	chr17	19680999	19680999	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacaatatcttcggtctgctGaaacatctcatccagggctg	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	19680999	19680999	G	A	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	nonsense	c.2947	p.Q983*	1.000	pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	94	0	0	55	19	25.68	-	-	-	A	19680999	G	A	19680999	4	1	240	1	0	0	0	0	0	1	0	0	17073	1299	45	2	171	2	ULK2	17	19680999	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	758188	19680999	61514211	3474	22324										
NOS2	0	genome.wustl.edu	37	chr17	26099366	26099366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcacagctgaataaggcccCcaggtcccaggccagcgcct	12	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26099366	26099366	C	T	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.1672	p.G558R	0.778	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	56	0	0	62	20	24.39	-	-	-	T	26099366	C	T	26099366	3	4	240	1	0	0	0	0	1	0	0	0	10615	623	22	4	1845	4	NOS2	17	26099366	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6418367	26099366	55095844	3475	22325										
NOS2	0	genome.wustl.edu	37	chr17	26101430	26101430	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcattctgcatgtacttcatGaaggattctgcagccgagtg	10	9	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26101430	26101430	G	A	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	silent	c.1329	p.F443	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	85	0	0	88	24	21.43	-	-	-	A	26101430	G	A	26101430	2	1	240	1	0	0	0	0	0	0	0	1	10615	1281	45	2		2	NOS2	17	26101430	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2064	26101430	55093780	3476	22326										
NOS2	0	genome.wustl.edu	37	chr17	26116657	26116657	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctccacgaggggctgcggGgactcattctgctgcttgct	14	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26116657	26116657	G	A	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	silent	c.168	p.S56	0.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	90	0	0	122	47	27.81	-	-	-	A	26116657	G	A	26116657	2	1	240	1	0	0	0	0	0	0	0	1	10615	1219	43	4		4	NOS2	17	26116657	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15227	26116657	55078553	3477	22327										
VTN	0	genome.wustl.edu	37	chr17	26695900	26695900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accccctgagtacccttgaaGaagtagacccgctcccggcc	9	17	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26695900	26695900	G	C	SNP	VTN	ENST00000226218	human	ensembl	69_37n	-1	known	missense	c.819	p.F273L	1.000	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Hemopexin/matrixin_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000255604	29	0	0	44	8	15.38	-	-	-	C	26695900	G	C	26695900	3	2	240	1	0	0	0	0	1	0	0	0	17334	933	33	2	633	2	VTN	17	26695900	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	579243	26695900	54499310	3478	22328										
SARM1	0	genome.wustl.edu	37	chr17	26715448	26715448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaagcaggcaagttcgagGacaaactcatccagagtgtc	12	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26715448	26715448	G	A	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	missense	c.1711	p.D571N	1.000	superfamily_TIR_dom,smart_TIR_dom	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	58	0	0	55	18	24.32	-	-	-	A	26715448	G	A	26715448	3	1	240	1	0	0	0	0	1	0	0	0	13929	1174	41	2	1837	2	SARM1	17	26715448	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19548	26715448	54479762	3479	22329										
SLC46A1	0	genome.wustl.edu	37	chr17	26726705	26726705	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaactgctggaactcgagGtgaggatcagccttttccag	13	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26726705	26726705	G	A	SNP	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	silent	c.1347	p.H449	0.001	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	104	0	0	110	26	19.12	-	-	-	A	26726705	G	A	26726705	2	1	240	1	0	0	0	0	0	0	0	1	14733	1252	44	4		4	SLC46A1	17	26726705	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11257	26726705	54468505	3480	22330										
SLC13A2	0	genome.wustl.edu	37	chr17	26821425	26821425	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagaaaacccagggaagctGaaggcccctcttggcctcct	11	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26821425	26821425	G	A	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	silent	c.1350	p.L450	0.999	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	82	0	0	95	23	19.49	-	-	-	A	26821425	G	A	26821425	2	1	240	1	0	0	0	0	0	0	0	1	14481	1277	45	2		2	SLC13A2	17	26821425	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	94720	26821425	54373785	3481	22331										
KIAA0100	0	genome.wustl.edu	37	chr17	26965612	26965612	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaatggaaatgttgacattGgagatggaggtgctaaagat	14	2	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	26965612	26965612	G	A	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.1278	p.S426	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	100	0	0	130	31	19.25	-	-	-	A	26965612	G	A	26965612	2	1	240	1	0	0	0	0	0	0	0	1	8206	1335	47	4		4	KIAA0100	17	26965612	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	144187	26965612	54229598	3482	22332										
SUPT6H	0	genome.wustl.edu	37	chr17	27022412	27022412	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatcatgaagattgacattGagaagttcagtgcagacctg	11	7	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	27022412	27022412	G	C	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.3817	p.E1273Q	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pirsf_TF_Spt6,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	73	0	0	83	17	17	-	-	-	C	27022412	G	C	27022412	3	2	240	1	0	0	0	0	1	0	0	0	15491	1291	45	2	3927	2	SUPT6H	17	27022412	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	56800	27022412	54172798	3483	22333										
PHF12	0	genome.wustl.edu	37	chr17	27237210	27237210	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcacacgtagaggggagatCtgatgatgtggtgacaggtg	17	6	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	27237210	27237210	C	G	SNP	PHF12	ENST00000577226	human	ensembl	69_37n	-1	putative	missense	c.2393	p.R798T	0.211	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	53	0	0	52	16	23.53	-	-	-	G	27237210	C	G	27237210	3	3	240	1	0	0	0	0	1	0	0	0	11897	928	32	2		2	PHF12	17	27237210	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	214798	27237210	53958000	3484	22334										
MYO18A	0	genome.wustl.edu	37	chr17	27421769	27421769	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtttcttgaccttggccaGagaagcctcatccttggact	9	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	27421769	27421769	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	silent	c.4609	p.L1537	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	117	0	0	139	33	19.19	-	-	-	A	27421769	G	A	27421769	2	1	240	1	0	0	0	0	0	0	0	1	10137	933	33	2		2	MYO18A	17	27421769	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	184559	27421769	53773441	3485	22335										
MYO18A	0	genome.wustl.edu	37	chr17	27438527	27438527	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagccagtcacattgtactCtacccagttggtgccatggc	9	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	27438527	27438527	C	G	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.2815	p.E939Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	193	0	0	193	52	21.22	-	-	-	G	27438527	C	G	27438527	3	3	240	1	0	0	0	0	1	0	0	0	10137	922	32	2	3453	2	MYO18A	17	27438527	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16758	27438527	53756683	3486	22336										
EFCAB5	0	genome.wustl.edu	37	chr17	28296215	28296215	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagaaaagaagaaggttttGacagaagctgatactccaag	11	5	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	28296215	28296215	G	C	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.597	p.L199F	0.017	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	36	0	0	30	8	21.05	-	-	-	C	28296215	G	C	28296215	3	2	240	1	0	0	0	0	1	0	0	0	4973	1281	45	2	611	2	EFCAB5	17	28296215	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	857688	28296215	52898995	3487	22337										
EFCAB5	0	genome.wustl.edu	37	chr17	28419858	28419858	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttgttgtttgttcacagTatgttaacaaatatttagtc	6	6	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	28419858	28419858	T	G	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.4225	p.Y1409D	0.064	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	115	0	0	162	36	18.18	-	-	-	G	28419858	T	G	28419858	3	3	240	1	0	0	0	0	1	0	0	0	4973	1652	57	5	4478	5	EFCAB5	17	28419858	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	123643	28419858	52775352	3488	22338										
CPD	0	genome.wustl.edu	37	chr17	28748752	28748752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttagagaatgcaaccatctCagtggctggtattaatcata	9	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	28748752	28748752	C	T	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	missense	c.1208	p.S403L	0.903	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	149	0	0	128	27	17.42	-	-	-	T	28748752	C	T	28748752	3	4	240	1	0	0	0	0	1	0	0	0	3828	838	29	2	1222	2	CPD	17	28748752	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	328894	28748752	52446458	3489	22339										
CPD	0	genome.wustl.edu	37	chr17	28778811	28778811	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaagagaaagactgtacttCaaaaataggacaaacaaatg	7	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	28778811	28778811	C	G	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	nonsense	c.3152	p.S1051*	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	130	0	0	138	42	23.33	-	-	-	G	28778811	C	G	28778811	4	3	240	1	0	0	0	0	0	1	0	0	3828	838	29	2	3206	2	CPD	17	28778811	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	30059	28778811	52416399	3490	22340										
ATAD5	0	genome.wustl.edu	37	chr17	29220545	29220545	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgaaagagaacagccattGaaaaagtcccagaaaaagaa	8	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	29220545	29220545	G	C	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.4674	p.L1558F	0.022	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	49	0	0	30	7	18.92	-	-	-	C	29220545	G	C	29220545	3	2	240	1	0	0	0	0	1	0	0	0	1080	1281	45	2	4756	2	ATAD5	17	29220545	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	441734	29220545	51974665	3491	22341										
EVI2A	0	genome.wustl.edu	37	chr17	29645755	29645755	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacagaaggtatataaagctCctgttcagatttagaagtta	9	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	29645755	29645755	C	A	SNP	EVI2A	ENST00000247270	human	ensembl	69_37n	-1	known	nonsense	c.346	p.E116*	0.000	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860	184	0	0	89	39	30.47	-	-	-	A	29645755	C	A	29645755	4	1	240	1	0	0	0	0	0	1	0	0	5324	864	30	2	437	2	EVI2A	17	29645755	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	425210	29645755	51549455	3492	22342										
NF1	0	genome.wustl.edu	37	chr17	29657391	29657391	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggccagttactagagacatCaggtttatgtatccctgcca	10	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	29657391	29657391	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.5687	p.S1896L	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	113	0	0	52	19	26.76	-	-	-	T	29657391	C	T	29657391	3	4	240	1	0	0	0	0	1	0	0	0	10428	838	29	2	5902	2	NF1	17	29657391	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11636	29657391	51537819	3493	22343										
RAB11FIP4	0	genome.wustl.edu	37	chr17	29844699	29844699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacaggccccacctttgctGatggcgagctcatccccagg	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	29844699	29844699	G	A	SNP	RAB11FIP4	ENST00000325874	human	ensembl	69_37n	1	known	missense	c.367	p.D123N	0.994	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242	37	0	0	14	6	30	-	-	-	A	29844699	G	A	29844699	3	1	240	1	0	0	0	0	1	0	0	0	12979	1290	45	2	381	2	RAB11FIP4	17	29844699	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	187308	29844699	51350511	3494	22344										
RAB11FIP4	0	genome.wustl.edu	37	chr17	29852190	29852190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaggcgcggcgccaccgcGaggcctacggcaagctggag	18	13	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	29852190	29852190	G	A	SNP	RAB11FIP4	ENST00000325874	human	ensembl	69_37n	1	known	missense	c.1216	p.E406K	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242	19	0	0	13	5	26.32	-	-	-	A	29852190	G	A	29852190	3	1	240	1	0	0	0	0	1	0	0	0	12979	1059	37	1	1254	1	RAB11FIP4	17	29852190	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7491	29852190	51343020	3495	22345										
LRRC37B	0	genome.wustl.edu	37	chr17	30348459	30348459	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaatttggctccattcctGaaggaattggattcagctgg	11	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	30348459	30348459	G	A	SNP	LRRC37B	ENST00000341671	human	ensembl	69_37n	1	known	silent	c.294	p.L98	0.004	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	35	0	0	10	7	41.18	-	-	-	A	30348459	G	A	30348459	2	1	240	1	0	0	0	0	0	0	0	1	9060	1277	45	2		2	LRRC37B	17	30348459	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	496269	30348459	50846751	3496	22346										
LRRC37B	0	genome.wustl.edu	37	chr17	30348646	30348646	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggttcaaactacagatctaGatcgggctgcaggtcatcag	12	9	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	30348646	30348646	G	C	SNP	LRRC37B	ENST00000341671	human	ensembl	69_37n	1	known	missense	c.481	p.D161H	0.005	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	31	0	0	26	10	27.78	-	-	-	C	30348646	G	C	30348646	3	2	240	1	0	0	0	0	1	0	0	0	9060	942	33	2	483	2	LRRC37B	17	30348646	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	187	30348646	50846564	3497	22347										
TMEM98	0	genome.wustl.edu	37	chr17	31263412	31263412	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctctggggccaagatgaaGacttcagccagtgtcagcga	14	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	31263412	31263412	G	A	SNP	TMEM98	ENST00000394642	human	ensembl	69_37n	1	known	silent	c.360	p.K120	1.000	NULL	NULL	-	no_errors	TMEM98	HGNC	ENSG00000006042	103	1	0.96	46	23	33.33	-	-	-	A	31263412	G	A	31263412	2	1	240	1	0	0	0	0	0	0	0	1	16320	933	33	2		2	TMEM98	17	31263412	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	914766	31263412	49931798	3498	22348										
CCT6B	0	genome.wustl.edu	37	chr17	33258059	33258059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgggtcataaccagcattCtgagcaagaacctttaggaa	10	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	33258059	33258059	C	T	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	silent	c.1359	p.Q453	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	98	0	0	33	19	36.54	-	-	-	T	33258059	C	T	33258059	2	4	240	1	0	0	0	0	0	0	0	1	2987	912	32	2		2	CCT6B	17	33258059	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1994647	33258059	47937151	3499	22349										
LIG3	0	genome.wustl.edu	37	chr17	33310110	33310110	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctattccgaaaacatcactGgcgtgatgtaagacaattca	7	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	33310110	33310110	G	A	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	nonsense	c.86	p.W29*	0.304	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	111	0	0	67	54	44.63	-	-	-	A	33310110	G	A	33310110	4	1	240	1	0	0	0	0	0	1	0	0	8837	1357	47	4	88	4	LIG3	17	33310110	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	52051	33310110	47885100	3500	22350										
LIG3	0	genome.wustl.edu	37	chr17	33319683	33319683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctctgagcgtccaggcctCgctgatgacacctgtgcagc	12	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	33319683	33319683	C	T	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.1427	p.S476L	0.000	superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	38	0	0	19	12	38.71	-	-	-	T	33319683	C	T	33319683	3	4	240	1	0	0	0	0	1	0	0	0	8837	893	31	1	1453	1	LIG3	17	33319683	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9573	33319683	47875527	3501	22351										
SLFN12L	0	genome.wustl.edu	37	chr17	33802158	33802158	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgccttcagggctcaagtaGaagatctttgtcatgacaca	9	9	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	33802158	33802158	G	C	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.1644	p.F548L	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	183	0	0	108	44	28.95	-	-	-	C	33802158	G	C	33802158	3	2	240	1	0	0	0	0	1	0	0	0	14824	933	33	2	219	2	SLFN12L	17	33802158	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	482475	33802158	47393052	3502	22352										
SLFN12L	0	genome.wustl.edu	37	chr17	33802452	33802452	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttaagtccttcatgttgtgaGaacagatttctgcagaaggt	10	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	33802452	33802452	G	C	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.1350	p.F450L	0.027	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	74	0	0	34	13	27.66	-	-	-	C	33802452	G	C	33802452	3	2	240	1	0	0	0	0	1	0	0	0	14824	933	33	2	513	2	SLFN12L	17	33802452	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	294	33802452	47392758	3503	22353										
PIGW	0	genome.wustl.edu	37	chr17	34894238	34894238	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcagaatctctagtccctGaagccgaaagaatggaaccc	8	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	34894238	34894238	G	A	SNP	PIGW	ENST00000328396	human	ensembl	69_37n	1	known	missense	c.1288	p.E430K	0.049	pfam_GWT1,pirsf_GWT1	pfam_GWT1,pirsf_GWT1	-	no_errors	PIGW	HGNC	ENSG00000184886	93	0	0	51	21	29.17	-	-	-	A	34894238	G	A	34894238	3	1	240	1	0	0	0	0	1	0	0	0	11976	1291	45	2	1290	2	PIGW	17	34894238	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1091786	34894238	46300972	3504	22354										
GGNBP2	0	genome.wustl.edu	37	chr17	34935842	34935843	+	Frame_Shift_Ins	INS	-	-	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgatgctttacgcaagagINSttttgaggtaagaacagtgg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	34935842	34935843	-	T	INS	GGNBP2	ENST00000304718	human	ensembl	69_37n	1	known	frame_shift_ins	c.1013_1014	p.E340fs	1.000:1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	53	0	0	29	19	39.58	-	-	-	T	34935843	-	T	34935842	7	5	240	1	0	1	1	0	0	0	0	0	6411	1029	36	0	1039	0	GGNBP2	17	34935842	Frame_Shift_Ins	INS	-	TCGA-AC-A23H-01A-11D-A159-09	41604	34935842	46259368	3505	22355										
ACACA	0	genome.wustl.edu	37	chr17	35454054	35454054	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccagcagaagacgcctCagccgccagtagaagaaggt	11	13	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	35454054	35454054	C	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	silent	c.6768	p.L2256	1.000	pfam_Carboxyl_trans	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	76	0	0	43	21	32.81	-	-	-	A	35454054	C	A	35454054	2	1	240	1	0	0	0	0	0	0	0	1	106	813	29	2		2	ACACA	17	35454054	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	518212	35454054	45741156	3506	22356										
SYNRG	0	genome.wustl.edu	37	chr17	35889936	35889936	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatgctttgtaatcacagtCatcttttcccagcagcacta	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	35889936	35889936	C	T	SNP	SYNRG	ENST00000394378	human	ensembl	69_37n	-1	novel	missense	c.3450	p.M1150I	0.001	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	98	0	0	56	29	34.12	-	-	-	T	35889936	C	T	35889936	3	4	240	1	0	0	0	0	1	0	0	0	15552	826	29	2	345	2	SYNRG	17	35889936	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	435882	35889936	45305274	3507	22357										
MRPL45	0	genome.wustl.edu	37	chr17	36454421	36454421	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctttaccttccagccagttCtggtgactcagtccgcagct	8	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	36454421	36454421	C	G	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	missense	c.73	p.L25V	0.153	NULL	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	59	0	0	32	15	31.91	-	-	-	G	36454421	C	G	36454421	3	3	240	1	0	0	0	0	1	0	0	0	9881	912	32	2	9	2	MRPL45	17	36454421	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	564485	36454421	44740789	3508	22358										
GPR179	0	genome.wustl.edu	37	chr17	36485641	36485641	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcgactctggggctccttCactcgtctcccaggggcaga	11	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	36485641	36485641	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.3811	p.E1271K	0.844	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	56	0	0	30	16	34.78	-	-	-	T	36485641	C	T	36485641	3	4	240	1	0	0	0	0	1	0	0	0	6724	835	29	2	3296	2	GPR179	17	36485641	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31220	36485641	44709569	3509	22359										
MLLT6	0	genome.wustl.edu	37	chr17	36871922	36871922	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagcacgcaggagacctctGagagcagcagggagtcaaag	14	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	36871922	36871922	G	A	SNP	MLLT6	ENST00000325718	human	ensembl	69_37n	1	known	missense	c.877	p.E293K	0.998	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT6	HGNC	ENSG00000108292	100	0	0	75	27	26.47	-	-	-	A	36871922	G	A	36871922	3	1	240	1	0	0	0	0	1	0	0	0	9701	1291	45	2	911	2	MLLT6	17	36871922	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	386281	36871922	44323288	3510	22360										
RPL23	0	genome.wustl.edu	37	chr17	37006660	37006660	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgactcctgcattatcttCaaaataaagaaacacgccat	4	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	37006660	37006660	C	G	SNP	RPL23	ENST00000479035	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	1.000	pfam_Ribosomal_L14b/L23e,superfamily_Ribosomal_L14_dom	pfam_Ribosomal_L14b/L23e,superfamily_Ribosomal_L14_dom	-	no_errors	RPL23	HGNC	ENSG00000125691	86	0	0	52	21	28.77	-	-	-	G	37006660	C	G	37006660	3	3	240	1	0	0	0	0	1	0	0	0	13656	835	29	2	135	2	RPL23	17	37006660	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	134738	37006660	44188550	3511	22361										
CASC3	0	genome.wustl.edu	37	chr17	38320318	38320318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggaagctccggtggattCtagtacaagtggacttgagc	14	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	38320318	38320318	C	T	SNP	CASC3	ENST00000264645	human	ensembl	69_37n	1	known	missense	c.1370	p.S457F	0.299	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349	28	0	0	20	5	20	-	-	-	T	38320318	C	T	38320318	3	4	240	1	0	0	0	0	1	0	0	0	2686	913	32	2	1396	2	CASC3	17	38320318	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1313658	38320318	42874892	3512	22362										
KRT26	0	genome.wustl.edu	37	chr17	38926132	38926132	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgttgcagcgttgcactCtgaagtgtaattgtcgaaag	12	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	38926132	38926132	C	G	SNP	KRT26	ENST00000335552	human	ensembl	69_37n	-1	known	splice_site	c.844-1	e5-1	1.000	-	-	-	no_errors	KRT26	HGNC	ENSG00000186393	186	0	0	83	25	23.15	-	-	-	G	38926132	C	G	38926132	5	3	240	1	0	0	0	0	0	0	1	0	8516	927	32	2	579	2	KRT26	17	38926132	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	605814	38926132	42269078	3513	22363										
KRT23	0	genome.wustl.edu	37	chr17	39086224	39086224	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcttcatgagaatgagctCtttcctcattccttccacct	4	14	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39086224	39086224	C	G	SNP	KRT23	ENST00000209718	human	ensembl	69_37n	-1	known	missense	c.604	p.E202Q	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244	152	0	0	77	38	33.04	-	-	-	G	39086224	C	G	39086224	3	3	240	1	0	0	0	0	1	0	0	0	8513	922	32	2	688	2	KRT23	17	39086224	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	160092	39086224	42108986	3514	22364										
KRT23	0	genome.wustl.edu	37	chr17	39086344	39086344	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaaaggagtgttcattttCatacctttggtgagaaggaa	10	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39086344	39086344	C	T	SNP	KRT23	ENST00000209718	human	ensembl	69_37n	-1	known	missense	c.484	p.E162K	1.000	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244	108	0	0	51	31	37.8	-	-	-	T	39086344	C	T	39086344	3	4	240	1	0	0	0	0	1	0	0	0	8513	835	29	2	808	2	KRT23	17	39086344	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	120	39086344	42108866	3515	22365										
KRTAP4-9	0	genome.wustl.edu	37	chr17	39262177	39262177	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgctgcgtgcgtccagtCtgtggccgagtctcctgcca	13	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39262177	39262177	C	T	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	1	known	silent	c.537	p.V179	0.850	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	76	0	0	58	19	24.68	-	-	-	T	39262177	C	T	39262177	2	4	240	1	0	0	0	0	0	0	0	1	8611	900	32	2		2	KRTAP4-9	17	39262177	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	175833	39262177	41933033	3516	22366										
KRT13	0	genome.wustl.edu	37	chr17	39659616	39659616	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaggtcagtcttagacaGagtgagctcatccagcaccc	9	14	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39659616	39659616	G	A	SNP	KRT13	ENST00000246635	human	ensembl	69_37n	-1	known	silent	c.658	p.L220	0.994	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	119	0	0	54	39	41.94	-	-	-	A	39659616	G	A	39659616	2	1	240	1	0	0	0	0	0	0	0	1	8503	933	33	2		2	KRT13	17	39659616	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	397439	39659616	41535594	3517	22367										
KRT19	0	genome.wustl.edu	37	chr17	39680135	39680135	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgattctgccgctcactatCagctcgcacatcgcccagct	7	17	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39680135	39680135	C	T	SNP	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	missense	c.1063	p.D355N	0.997	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	50	0	0	18	11	37.93	-	-	-	T	39680135	C	T	39680135	3	4	240	1	0	0	0	0	1	0	0	0	8509	826	29	2	143	2	KRT19	17	39680135	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20519	39680135	41515075	3518	22368										
KRT9	0	genome.wustl.edu	37	chr17	39724873	39724873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actactggatacctcatgctCgatctgggttatctgcaaaa	8	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39724873	39724873	C	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	missense	c.1057	p.E353K	0.006	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	69	0	0	22	43	66.15	-	-	-	T	39724873	C	T	39724873	3	4	240	1	0	0	0	0	1	0	0	0	8554	893	31	1	826	1	KRT9	17	39724873	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44738	39724873	41470337	3519	22369										
HAP1	0	genome.wustl.edu	37	chr17	39887781	39887781	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccagaatgagcatctgttCctcatcctcaagagtgtcga	8	12	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39887781	39887781	C	A	SNP	HAP1	ENST00000310778	human	ensembl	69_37n	-1	known	nonsense	c.1033	p.E345*	0.999	pfam_HAP1_N	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805	69	0	0	52	23	30.67	-	-	-	A	39887781	C	A	39887781	4	1	240	1	0	0	0	0	0	1	0	0	7004	864	30	2	850	2	HAP1	17	39887781	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162908	39887781	41307429	3520	22370										
FKBP10	0	genome.wustl.edu	37	chr17	39973388	39973388	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggaccgaggcctcatgggCatgtgtgtcaacgagcggcg	16	10	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	39973388	39973388	C	T	SNP	FKBP10	ENST00000321562	human	ensembl	69_37n	1	known	silent	c.324	p.G108	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756	64	0	0	34	20	36.36	-	-	-	T	39973388	C	T	39973388	2	4	240	1	0	0	0	0	0	0	0	1	5948	697	25	4		4	FKBP10	17	39973388	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	85607	39973388	41221822	3521	22371										
DNAJC7	0	genome.wustl.edu	37	chr17	40133873	40133873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgccccagccaactcacCacccatattcatgccctcct	5	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	40133873	40133873	C	T	SNP	DNAJC7	ENST00000457167	human	ensembl	69_37n	-1	known	missense	c.1384	p.D462N	1.000	superfamily_DnaJ_N	pfam_TPR-1,pfam_TPR_2,pfam_DnaJ_N,superfamily_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC7	HGNC	ENSG00000168259	129	0	0	63	48	43.24	-	-	-	T	40133873	C	T	40133873	3	4	240	1	0	0	0	0	1	0	0	0	4689	608	21	4	112	4	DNAJC7	17	40133873	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	160485	40133873	41061337	3522	22372										
WNK4	0	genome.wustl.edu	37	chr17	40936072	40936072	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccatcctgcaccgggatctCaagtgcgacaatgtctttat	8	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	40936072	40936072	C	T	SNP	WNK4	ENST00000246914	human	ensembl	69_37n	1	known	silent	c.909	p.L303	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK4	HGNC	ENSG00000126562	55	0	0	33	18	35.29	-	-	-	T	40936072	C	T	40936072	2	4	240	1	0	0	0	0	0	0	0	1	17477	813	29	2		2	WNK4	17	40936072	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	802199	40936072	40259138	3523	22373										
DHX8	0	genome.wustl.edu	37	chr17	41570317	41570317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ataagcatgtggaccgccctCctccagaagagcccaccatt	8	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	41570317	41570317	C	G	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	missense	c.772	p.P258A	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	64	0	0	42	16	27.59	-	-	-	G	41570317	C	G	41570317	3	3	240	1	0	0	0	0	1	0	0	0	4551	855	30	2	794	2	DHX8	17	41570317	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	634245	41570317	39624893	3524	22374										
DHX8	0	genome.wustl.edu	37	chr17	41585183	41585183	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatttctcttcagacagttCagaaacggcaggacatgaag	9	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	41585183	41585183	C	T	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	nonsense	c.2116	p.Q706*	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	61	0	0	43	24	35.82	-	-	-	T	41585183	C	T	41585183	4	4	240	1	0	0	0	0	0	1	0	0	4551	827	29	2	2174	2	DHX8	17	41585183	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14866	41585183	39610027	3525	22375										
UBTF	0	genome.wustl.edu	37	chr17	42288479	42288479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgttgatgttcagcatcttCtcttcccccaagacccgctg	7	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	42288479	42288479	C	G	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	missense	c.1131	p.E377D	1.000	superfamily_HMG_superfamily,superfamily_ARM-type_fold	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	53	0	0	26	10	27.78	-	-	-	G	42288479	C	G	42288479	3	3	240	1	0	0	0	0	1	0	0	0	17006	912	32	2	1203	2	UBTF	17	42288479	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	703296	42288479	38906731	3526	22376										
C17orf104	0	genome.wustl.edu	37	chr17	42751493	42751493	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaagatacagtaaactgtGaagataaagtccatgaaagc	8	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	42751493	42751493	G	C	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.2788	p.E930Q	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	80	0	0	28	21	42.86	-	-	-	C	42751493	G	C	42751493	3	2	240	1	0	0	0	0	1	0	0	0	1864	1291	45	2	2818	2	C17orf104	17	42751493	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	463014	42751493	38443717	3527	22377										
EFTUD2	0	genome.wustl.edu	37	chr17	42932315	42932315	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaatctggaccacctcattCtctatgtcctctgccaggcc	7	15	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	42932315	42932315	C	G	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2103	p.E701D	1.000	superfamily_Ribosomal_S5_D2-typ_fold	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	100	0	0	54	33	37.93	-	-	-	G	42932315	C	G	42932315	3	3	240	1	0	0	0	0	1	0	0	0	4996	912	32	2	847	2	EFTUD2	17	42932315	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	180822	42932315	38262895	3528	22378										
GFAP	0	genome.wustl.edu	37	chr17	42985465	42985465	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctccacggtcttcaccacGatgttcctcttgaggtggcc	9	14	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	42985465	42985465	G	A	SNP	GFAP	ENST00000253408	human	ensembl	69_37n	-1	known	silent	c.1224	p.I408	0.974	NULL	pfam_F	-	no_errors	GFAP	HGNC	ENSG00000131095	114	0	0	57	35	38.04	-	-	-	A	42985465	G	A	42985465	2	1	240	1	0	0	0	0	0	0	0	1	6389	1048	37	1		1	GFAP	17	42985465	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	53150	42985465	38209745	3529	22379										
LRRC37A2	0	genome.wustl.edu	37	chr17	44627783	44627783	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgtttttttttttagctCaaaaaagaagttccaggata	8	4	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	44627783	44627783	C	T	SNP	LRRC37A2	ENST00000333412	human	ensembl	69_37n	1	known	silent	c.4707	p.L1569	0.020	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A2	HGNC	ENSG00000238083	123	0	0	244	63	20.32	-	-	-	T	44627783	C	T	44627783	2	4	240	1	0	0	0	0	0	0	0	1	9058	813	29	2		2	LRRC37A2	17	44627783	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1642318	44627783	36567427	3530	22380										
NSF	0	genome.wustl.edu	37	chr17	44832679	44832679	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catttcttctgatgtatttaGatggatcctgaataccgtgt	8	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	44832679	44832679	G	C	SNP	NSF	ENST00000398238	human	ensembl	69_37n	1	known	splice_site	c.2158-1	e20-1	1.000	-	-	-	no_errors	NSF	HGNC	ENSG00000073969	101	0	0	148	25	14.37	-	-	-	C	44832679	G	C	44832679	5	2	240	1	0	0	0	0	0	0	1	0	10744	956	33	2	2235	2	NSF	17	44832679	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204896	44832679	36362531	3531	22381										
OSBPL7	0	genome.wustl.edu	37	chr17	45885729	45885729	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccagtaggtattgttggtCacccaccactctttcccgct	7	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	45885729	45885729	C	T	SNP	OSBPL7	ENST00000007414	human	ensembl	69_37n	-1	known	silent	c.2457	p.V819	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL7	HGNC	ENSG00000006025	45	0	0	131	16	10.88	-	-	-	T	45885729	C	T	45885729	2	4	240	1	0	0	0	0	0	0	0	1	11355	813	29	2		2	OSBPL7	17	45885729	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1053050	45885729	35309481	3532	22382										
TTLL6	0	genome.wustl.edu	37	chr17	46865235	46865235	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagagggagttgttgtcctgGaaaaacttctcatacttctc	9	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	46865235	46865235	G	C	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	missense	c.1527	p.F509L	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	105	0	0	351	62	14.98	-	-	-	C	46865235	G	C	46865235	3	2	240	1	0	0	0	0	1	0	0	0	16828	1165	41	2	1168	2	TTLL6	17	46865235	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	979506	46865235	34329975	3533	22383										
SNF8	0	genome.wustl.edu	37	chr17	47018359	47018359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactcaggattcttccggatCtcctgcttgtgtttgctggc	10	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	47018359	47018359	C	G	SNP	SNF8	ENST00000502492	human	ensembl	69_37n	-1	known	missense	c.171	p.E57D	0.999	pfam_EAP30,pirsf_ESCRT-2_cplx_Snf8	pfam_EAP30,pirsf_ESCRT-2_cplx_Snf8	-	no_errors	SNF8	HGNC	ENSG00000159210	76	0	0	135	20	12.9	-	-	-	G	47018359	C	G	47018359	3	3	240	1	0	0	0	0	1	0	0	0	14935	912	32	2	629	2	SNF8	17	47018359	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	153124	47018359	34176851	3534	22384										
GIP	0	genome.wustl.edu	37	chr17	47041793	47041793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacctggggcctcgaggttGagggctgctcaccttagcat	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	47041793	47041793	G	C	SNP	GIP	ENST00000357424	human	ensembl	69_37n	-1	known	missense	c.136	p.Q46E	0.047	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	GIP	HGNC	ENSG00000159224	90	0	0	137	26	15.95	-	-	-	C	47041793	G	C	47041793	3	2	240	1	0	0	0	0	1	0	0	0	6443	1299	45	2	341	2	GIP	17	47041793	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23434	47041793	34153417	3535	22385										
B4GALNT2	0	genome.wustl.edu	37	chr17	47236528	47236528	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgttgaagttcattcttCagcacgtgacatacaccagc	8	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	47236528	47236528	C	T	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	nonsense	c.808	p.Q270*	1.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	66	0	0	59	16	21.33	-	-	-	T	47236528	C	T	47236528	4	4	240	1	0	0	0	0	0	1	0	0	1271	827	29	2	848	2	B4GALNT2	17	47236528	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	194735	47236528	33958682	3536	22386										
B4GALNT2	0	genome.wustl.edu	37	chr17	47246924	47246924	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggaccctactcgtggggtCatgcccagaagtgattatag	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	47246924	47246924	C	G	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	nonsense	c.1535	p.S512*	0.998	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	58	0	0	56	11	16.42	-	-	-	G	47246924	C	G	47246924	4	3	240	1	0	0	0	0	0	1	0	0	1271	838	29	2	1595	2	B4GALNT2	17	47246924	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10396	47246924	33948286	3537	22387										
ZNF652	0	genome.wustl.edu	37	chr17	47394868	47394868	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatggctgttcttctgtttCatggagatgcggtttgctca	11	7	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	47394868	47394868	C	T	SNP	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	missense	c.220	p.E74K	0.942	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	116	0	0	100	27	21.26	-	-	-	T	47394868	C	T	47394868	3	4	240	1	0	0	0	0	1	0	0	0	18161	835	29	2	1620	2	ZNF652	17	47394868	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	147944	47394868	33800342	3538	22388										
ITGA3	0	genome.wustl.edu	37	chr17	48148880	48148880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcagacctgaacaatgaTgggtgagaatctagggacat	13	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48148880	48148880	T	C	SNP	ITGA3	ENST00000320031	human	ensembl	69_37n	1	known	silent	c.957	p.D319	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	43	0	0	46	13	22.03	-	-	-	C	48148880	T	C	48148880	2	2	240	1	0	0	0	0	0	0	0	1	7931	1461	51	5		5	ITGA3	17	48148880	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	754012	48148880	33046330	3539	22389										
ITGA3	0	genome.wustl.edu	37	chr17	48156613	48156613	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttatcaaccctctcaacctCactctttctgtaaggacact	3	15	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48156613	48156613	C	G	SNP	ITGA3	ENST00000320031	human	ensembl	69_37n	1	known	silent	c.2574	p.L858	0.981	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	70	0	0	67	13	16.25	-	-	-	G	48156613	C	G	48156613	2	3	240	1	0	0	0	0	0	0	0	1	7931	813	29	2		2	ITGA3	17	48156613	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7733	48156613	33038597	3540	22390										
COL1A1	0	genome.wustl.edu	37	chr17	48266749	48266749	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcacttacagcaggaccatCagcaccaggggatcctttct	10	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48266749	48266749	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.2818	p.D940N	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	21	0	0	21	7	25	-	-	-	T	48266749	C	T	48266749	3	4	240	1	0	0	0	0	1	0	0	0	3707	826	29	2	1628	2	COL1A1	17	48266749	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	110136	48266749	32928461	3541	22391										
XYLT2	0	genome.wustl.edu	37	chr17	48434547	48434547	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagacgcttgagatgtggctGatgccccaagggtcgctgaa	15	9	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48434547	48434547	G	T	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	silent	c.1875	p.L625	1.000	pfam_XylT_met	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	29	0	0	20	15	42.86	-	-	-	T	48434547	G	T	48434547	2	4	240	1	0	0	0	0	0	0	0	1	17561	1277	45	2		2	XYLT2	17	48434547	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	167798	48434547	32760663	3542	22392										
EME1	0	genome.wustl.edu	37	chr17	48456915	48456915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cattcacaaaggctgtggctGaggcgcccttcaagtgagta	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48456915	48456915	G	A	SNP	EME1	ENST00000393271	human	ensembl	69_37n	1	known	missense	c.1372	p.E458K	0.999	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920	42	0	0	111	19	14.62	-	-	-	A	48456915	G	A	48456915	3	1	240	1	0	0	0	0	1	0	0	0	5125	1291	45	2	1394	2	EME1	17	48456915	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	22368	48456915	32738295	3543	22393										
MYCBPAP	0	genome.wustl.edu	37	chr17	48603379	48603379	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccacagagaaggcctctgtGaatgctgagctgttaccacg	12	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	48603379	48603379	G	A	SNP	MYCBPAP	ENST00000485169	human	ensembl	69_37n	1	known	missense	c.46	p.E16K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYCBPAP	HGNC	ENSG00000136449	19	0	0	76	15	16.48	-	-	-	A	48603379	G	A	48603379	3	1	240	1	0	0	0	0	1	0	0	0	10091	1277	45	2	2103	2	MYCBPAP	17	48603379	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	146464	48603379	32591831	3544	22394										
KIF2B	0	genome.wustl.edu	37	chr17	51901855	51901855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtattctggctttgggtcaGaacaagcctcacaccccatt	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	51901855	51901855	G	C	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.1461	p.Q487H	0.998	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	46	0	0	42	12	22.22	-	-	-	C	51901855	G	C	51901855	3	2	240	1	0	0	0	0	1	0	0	0	8350	933	33	2	1463	2	KIF2B	17	51901855	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3298476	51901855	29293355	3545	22395										
ANKFN1	0	genome.wustl.edu	37	chr17	54428145	54428145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaattgtcgtgtgaaaatGacgcaacaaatgcaaaattt	9	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	54428145	54428145	G	A	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.216	p.M72I	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	108	0	0	129	47	26.7	-	-	-	A	54428145	G	A	54428145	3	1	240	1	0	0	0	0	1	0	0	0	625	1290	45	2	230	2	ANKFN1	17	54428145	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2526290	54428145	26767065	3546	22396										
ANKFN1	0	genome.wustl.edu	37	chr17	54520242	54520242	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagtctcggcttacaatatGaaaggatggggacctgctca	11	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	54520242	54520242	G	A	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.1056	p.M352I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	85	0	0	164	24	12.7	-	-	-	A	54520242	G	A	54520242	3	1	240	1	0	0	0	0	1	0	0	0	625	1290	45	2	1090	2	ANKFN1	17	54520242	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	92097	54520242	26674968	3547	22397										
EPX	0	genome.wustl.edu	37	chr17	56274475	56274475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccctctcgctgcggctccGcaaccggaccaactacctgg	9	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	56274475	56274475	G	A	SNP	EPX	ENST00000225371	human	ensembl	69_37n	1	known	missense	c.977	p.R326H	0.732	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	90	0	0	231	36	13.38	-	-	-	A	56274475	G	A	56274475	3	1	240	1	0	0	0	0	1	0	0	0	5237	1087	38	1	1003	1	EPX	17	56274475	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1754233	56274475	24920735	3548	22398										
MKS1	0	genome.wustl.edu	37	chr17	56289771	56289771	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgcctacgaggctgctgaGatactccttgtgccggccat	13	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	56289771	56289771	G	A	SNP	MKS1	ENST00000393119	human	ensembl	69_37n	-1	known	missense	c.883	p.L295F	1.000	NULL	pfam_B9_dom	-	no_errors	MKS1	HGNC	ENSG00000011143	80	0	0	172	38	18.1	-	-	-	A	56289771	G	A	56289771	3	1	240	1	0	0	0	0	1	0	0	0	9680	942	33	2	836	2	MKS1	17	56289771	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15296	56289771	24905439	3549	22399										
MKS1	0	genome.wustl.edu	37	chr17	56291688	56291688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgttaatgacgtggttgttCctgacaaactcttctgaggg	12	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	56291688	56291688	C	G	SNP	MKS1	ENST00000393119	human	ensembl	69_37n	-1	known	missense	c.576	p.R192S	1.000	NULL	pfam_B9_dom	-	no_errors	MKS1	HGNC	ENSG00000011143	113	0	0	251	40	13.75	-	-	-	G	56291688	C	G	56291688	3	3	240	1	0	0	0	0	1	0	0	0	9680	854	30	2	1155	2	MKS1	17	56291688	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1917	56291688	24903522	3550	22400										
PPM1E	0	genome.wustl.edu	37	chr17	56833543	56833543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgaggcggccgaggcttCggtagaggaacccggggagg	20	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	56833543	56833543	C	T	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	missense	c.185	p.S62L	0.132	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	15	0	0	30	6	16.22	-	-	-	T	56833543	C	T	56833543	3	4	240	1	0	0	0	0	1	0	0	0	12415	893	31	1	187	1	PPM1E	17	56833543	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	541855	56833543	24361667	3551	22401										
PPM1E	0	genome.wustl.edu	37	chr17	57057971	57057971	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaaaatcagttcagtcatCattgcctgaatggagtggtg	11	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	57057971	57057971	C	G	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	nonsense	c.1847	p.S616*	0.946	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	65	0	0	186	26	12.26	-	-	-	G	57057971	C	G	57057971	4	3	240	1	0	0	0	0	0	1	0	0	12415	838	29	2	1873	2	PPM1E	17	57057971	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	224428	57057971	24137239	3552	22402										
C17orf64	0	genome.wustl.edu	37	chr17	58506783	58506783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggccgaccgggaagacagtCtgcccaagctctgccatgca	12	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	58506783	58506783	C	G	SNP	C17orf64	ENST00000269127	human	ensembl	69_37n	1	known	missense	c.490	p.L164V	0.984	NULL	NULL	-	no_errors	C17orf64	HGNC	ENSG00000141371	22	0	0	107	34	24.11	-	-	-	G	58506783	C	G	58506783	3	3	240	1	0	0	0	0	1	0	0	0	1887	912	32	2	508	2	C17orf64	17	58506783	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1448812	58506783	22688427	3553	22403										
NACA2	0	genome.wustl.edu	37	chr17	59668454	59668454	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtactgattcaccactatCagatgctgttccagaccctg	8	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	59668454	59668454	C	T	SNP	NACA2	ENST00000521764	human	ensembl	69_37n	-1	known	missense	c.88	p.D30N	1.000	pirsf_Nas_poly-pep-assoc_cplx_asu	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pirsf_Nas_poly-pep-assoc_cplx_asu,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA2	HGNC	ENSG00000253506	111	0	0	199	28	12.33	-	-	-	T	59668454	C	T	59668454	3	4	240	1	0	0	0	0	1	0	0	0	10206	826	29	2	563	2	NACA2	17	59668454	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1161671	59668454	21526756	3554	22404										
MED13	0	genome.wustl.edu	37	chr17	60023861	60023861	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cataataaagttatataactGattcagcaccacaaaatgaa	4	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60023861	60023861	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	nonsense	c.6493	p.Q2165*	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	88	0	0	133	29	17.9	-	-	-	A	60023861	G	A	60023861	4	1	240	1	0	0	0	0	0	1	0	0	9501	1299	45	2	35	2	MED13	17	60023861	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	355407	60023861	21171349	3555	22405										
MED13	0	genome.wustl.edu	37	chr17	60028299	60028299	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accaagggccaatggttgctGaagaatattaggtacttcct	10	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60028299	60028299	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	nonsense	c.6178	p.Q2060*	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	71	0	0	105	17	13.93	-	-	-	A	60028299	G	A	60028299	4	1	240	1	0	0	0	0	0	1	0	0	9501	1299	45	2	358	2	MED13	17	60028299	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4438	60028299	21166911	3556	22406										
MED13	0	genome.wustl.edu	37	chr17	60059607	60059607	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaacttttcacaagtgcttCatcaacttttcctcctgaca	4	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60059607	60059607	C	T	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.3757	p.E1253K	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	55	0	0	70	12	14.63	-	-	-	T	60059607	C	T	60059607	3	4	240	1	0	0	0	0	1	0	0	0	9501	835	29	2	2827	2	MED13	17	60059607	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31308	60059607	21135603	3557	22407										
MED13	0	genome.wustl.edu	37	chr17	60072533	60072533	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgtgtttttttccagcttCtctctcactattttgtctat	4	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60072533	60072533	C	G	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.2161	p.E721Q	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	214	0	0	335	54	13.88	-	-	-	G	60072533	C	G	60072533	3	3	240	1	0	0	0	0	1	0	0	0	9501	922	32	2	4447	2	MED13	17	60072533	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12926	60072533	21122677	3558	22408										
EFCAB3	0	genome.wustl.edu	37	chr17	60451218	60451218	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaataatggagggcctgaaGaagtttaaacgtaagtgaaa	11	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60451218	60451218	G	A	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	silent	c.78	p.K26	0.999	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	59	0	0	51	11	17.74	-	-	-	A	60451218	G	A	60451218	2	1	240	1	0	0	0	0	0	0	0	1	4970	933	33	2		2	EFCAB3	17	60451218	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	378685	60451218	20743992	3559	22409										
MRC2	0	genome.wustl.edu	37	chr17	60769807	60769807	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaaatgaatgagcaacaaGaatagagccaggcgcgtggg	15	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	60769807	60769807	G	C	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	missense	c.4435	p.E1479Q	1.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	32	0	0	32	9	21.95	-	-	-	C	60769807	G	C	60769807	3	2	240	1	0	0	0	0	1	0	0	0	9830	943	33	2	4553	2	MRC2	17	60769807	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	318589	60769807	20425403	3560	22410										
ACE	0	genome.wustl.edu	37	chr17	61557151	61557151	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctcaccaacatcctggcttCctcgcgaagctacgccatgc	7	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	61557151	61557151	C	G	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.533	p.S178C	0.008	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	27	0	0	62	12	16.22	-	-	-	G	61557151	C	G	61557151	3	3	240	1	0	0	0	0	1	0	0	0	136	855	30	2	547	2	ACE	17	61557151	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	787344	61557151	19638059	3561	22411										
KCNH6	0	genome.wustl.edu	37	chr17	61611486	61611486	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctcactgtggtggatctCatcgtggacatcatgttcgt	10	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	61611486	61611486	C	T	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	silent	c.915	p.L305	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	51	0	0	120	18	13.04	-	-	-	T	61611486	C	T	61611486	2	4	240	1	0	0	0	0	0	0	0	1	8090	813	29	2		2	KCNH6	17	61611486	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54335	61611486	19583724	3562	22412										
KCNH6	0	genome.wustl.edu	37	chr17	61623093	61623093	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcagaacaggaacagcctGaggggctctggccaccccta	11	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	61623093	61623093	G	C	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.2815	p.E939Q	0.044	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	69	0	0	121	21	14.79	-	-	-	C	61623093	G	C	61623093	3	2	240	1	0	0	0	0	1	0	0	0	8090	1291	45	2	2869	2	KCNH6	17	61623093	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11607	61623093	19572117	3563	22413										
FTSJ3	0	genome.wustl.edu	37	chr17	61897486	61897486	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgagatgtccactgtgttCaccacggcttctgccttctt	8	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	61897486	61897486	C	T	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	silent	c.2304	p.V768	0.999	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	144	0	0	216	27	11.11	-	-	-	T	61897486	C	T	61897486	2	4	240	1	0	0	0	0	0	0	0	1	6138	813	29	2		2	FTSJ3	17	61897486	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	274393	61897486	19297724	3564	22414										
FTSJ3	0	genome.wustl.edu	37	chr17	61901720	61901720	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgcctttgcttgttctttCagcttcttggccacatatcg	8	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	61901720	61901720	C	G	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	silent	c.969	p.L323	1.000	pfam_rRNA_MeTfrase_Spb1_DUF3381	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	221	0	0	388	63	13.91	-	-	-	G	61901720	C	G	61901720	2	3	240	1	0	0	0	0	0	0	0	1	6138	813	29	2		2	FTSJ3	17	61901720	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4234	61901720	19293490	3565	22415										
TEX2	0	genome.wustl.edu	37	chr17	62289937	62289937	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccggggagaggcttaccttCagtatttcaggttctttgat	11	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	62289937	62289937	C	T	SNP	TEX2	ENST00000258991	human	ensembl	69_37n	-1	known	silent	c.1641	p.L547	0.270	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478	166	0	0	243	44	15.33	-	-	-	T	62289937	C	T	62289937	2	4	240	1	0	0	0	0	0	0	0	1	15876	813	29	2		2	TEX2	17	62289937	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	388217	62289937	18905273	3566	22416										
TEX2	0	genome.wustl.edu	37	chr17	62291115	62291115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaagaactggttttctgctCagaaagggatgacacactgg	13	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	62291115	62291115	C	T	SNP	TEX2	ENST00000258991	human	ensembl	69_37n	-1	known	missense	c.463	p.E155K	0.997	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478	42	0	0	70	15	17.65	-	-	-	T	62291115	C	T	62291115	3	4	240	1	0	0	0	0	1	0	0	0	15876	835	29	2	2985	2	TEX2	17	62291115	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1178	62291115	18904095	3567	22417										
POLG2	0	genome.wustl.edu	37	chr17	62488822	62488822	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgatgacgtaaccagaaatCaagccactggtttgaagttc	9	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	62488822	62488822	C	T	SNP	POLG2	ENST00000539111	human	ensembl	69_37n	-1	known	missense	c.757	p.D253N	1.000	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525	52	0	0	54	15	21.43	-	-	-	T	62488822	C	T	62488822	3	4	240	1	0	0	0	0	1	0	0	0	12275	826	29	2	724	2	POLG2	17	62488822	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	197707	62488822	18706388	3568	22418										
DDX5	0	genome.wustl.edu	37	chr17	62498636	62498636	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatggttttattctccttctCactcatgatctcttccatta	3	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	62498636	62498636	C	A	SNP	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	nonsense	c.1015	p.E339*	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	133	0	0	198	39	16.46	-	-	-	A	62498636	C	A	62498636	4	1	240	1	0	0	0	0	0	1	0	0	4398	835	29	2	849	2	DDX5	17	62498636	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9814	62498636	18696574	3569	22419										
AXIN2	0	genome.wustl.edu	37	chr17	63533054	63533054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagacatcctgcgacctgtCtccttcctcccggggaagct	9	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	63533054	63533054	C	G	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	missense	c.1840	p.D614H	1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	40	0	0	68	9	11.69	-	-	-	G	63533054	C	G	63533054	3	3	240	1	0	0	0	0	1	0	0	0	1241	913	32	2	711	2	AXIN2	17	63533054	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1034418	63533054	17662156	3570	22420										
AXIN2	0	genome.wustl.edu	37	chr17	63533676	63533676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagggggcaggcgcccggcGaggcggccgcgggaggcagc	24	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	63533676	63533676	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	missense	c.1478	p.S493L	0.001	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	76	0	0	83	23	21.7	-	-	-	A	63533676	G	A	63533676	3	1	240	1	0	0	0	0	1	0	0	0	1241	1059	37	1	1077	1	AXIN2	17	63533676	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	622	63533676	17661534	3571	22421										
AXIN2	0	genome.wustl.edu	37	chr17	63533813	63533813	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactggcagccaggggtcttGaggaccctggacaggtgatc	16	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	63533813	63533813	G	C	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	silent	c.1341	p.L447	1.000	pfam_Axin_b-cat-bd	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	37	0	0	27	8	22.86	-	-	-	C	63533813	G	C	63533813	2	2	240	1	0	0	0	0	0	0	0	1	1241	1277	45	2		2	AXIN2	17	63533813	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	137	63533813	17661397	3572	22422										
APOH	0	genome.wustl.edu	37	chr17	64216681	64216681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgcacttacccctgcattCtggtaatttagtccaatttc	5	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	64216681	64216681	C	G	SNP	APOH	ENST00000205948	human	ensembl	69_37n	-1	known	missense	c.595	p.E199Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Sushi_2,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	APOH	HGNC	ENSG00000091583	143	0	0	190	46	19.41	-	-	-	G	64216681	C	G	64216681	3	3	240	1	0	0	0	0	1	0	0	0	806	922	32	2	458	2	APOH	17	64216681	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	682868	64216681	16978529	3573	22423										
HELZ	0	genome.wustl.edu	37	chr17	65147275	65147275	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaggtggaatgtgcgcttGagatcaaacagtactgatgc	13	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	65147275	65147275	G	C	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	nonsense	c.2243	p.S748*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	88	0	0	185	21	10.19	-	-	-	C	65147275	G	C	65147275	4	2	240	1	0	0	0	0	0	1	0	0	7100	1294	45	2	3649	2	HELZ	17	65147275	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	930594	65147275	16047935	3574	22424										
PITPNC1	0	genome.wustl.edu	37	chr17	65688999	65688999	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccatgtcggcccaaatctGagtaactttatataaatatc	6	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	65688999	65688999	G	C	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	1	known	missense	c.994	p.E332Q	1.000	NULL	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	35	0	0	65	15	18.75	-	-	-	C	65688999	G	C	65688999	3	2	240	1	0	0	0	0	1	0	0	0	12023	1291	45	2	1151	2	PITPNC1	17	65688999	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	541724	65688999	15506211	3575	22425										
NOL11	0	genome.wustl.edu	37	chr17	65714082	65714082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatggcagcgctggaggaaGaattcacgttgtcttcggta	13	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	65714082	65714082	G	C	SNP	NOL11	ENST00000253247	human	ensembl	69_37n	1	known	missense	c.19	p.E7Q	0.510	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935	37	0	0	44	14	24.14	-	-	-	C	65714082	G	C	65714082	3	2	240	1	0	0	0	0	1	0	0	0	10593	943	33	2	21	2	NOL11	17	65714082	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25083	65714082	15481128	3576	22426										
BPTF	0	genome.wustl.edu	37	chr17	65928070	65928070	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctggtatgaccgtgattaGaacaccactccaacagtcaa	7	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	65928070	65928070	G	C	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.6572	p.R2191T	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	86	0	0	120	16	11.76	-	-	-	C	65928070	G	C	65928070	3	2	240	1	0	0	0	0	1	0	0	0	1503	942	33	2	6650	2	BPTF	17	65928070	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	213988	65928070	15267140	3577	22427										
AMZ2	0	genome.wustl.edu	37	chr17	66247258	66247258	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgttgtgggaataacaatGattgatctttacccaagaga	10	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66247258	66247258	G	A	SNP	AMZ2	ENST00000359904	human	ensembl	69_37n	1	known	missense	c.525	p.M175I	1.000	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ2	HGNC	ENSG00000196704	196	0	0	163	28	14.66	-	-	-	A	66247258	G	A	66247258	3	1	240	1	0	0	0	0	1	0	0	0	597	1290	45	2	535	2	AMZ2	17	66247258	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	319188	66247258	14947952	3578	22428										
ARSG	0	genome.wustl.edu	37	chr17	66416409	66416409	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttcaacctggaagacgaTaccgcagaagctgtgcccct	9	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66416409	66416409	T	C	SNP	ARSG	ENST00000448504	human	ensembl	69_37n	1	known	silent	c.1383	p.D461	0.003	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337	71	0	0	139	19	12.03	-	-	-	C	66416409	T	C	66416409	2	2	240	1	0	0	0	0	0	0	0	1	996	1403	49	5		5	ARSG	17	66416409	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	169151	66416409	14778801	3579	22429										
WIPI1	0	genome.wustl.edu	37	chr17	66446899	66446899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agccttatggacaagatgttGctggagtagctgtaattaca	11	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66446899	66446899	G	A	SNP	WIPI1	ENST00000262139	human	ensembl	69_37n	-1	known	silent	c.303	p.S101	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540	121	0	0	143	21	12.8	-	-	-	A	66446899	G	A	66446899	2	1	240	1	0	0	0	0	0	0	0	1	17467	1310	46	4		4	WIPI1	17	66446899	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30490	66446899	14748311	3580	22430										
PRKAR1A	0	genome.wustl.edu	37	chr17	66518949	66518949	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaggcactcgtacagactCaagggaggatgagatttctc	12	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66518949	66518949	C	T	SNP	PRKAR1A	ENST00000392710	human	ensembl	69_37n	1	known	nonsense	c.220	p.Q74*	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	PRKAR1A	HGNC	ENSG00000108946	43	0	0	50	13	20.63	-	-	-	T	66518949	C	T	66518949	4	4	240	1	0	0	0	0	0	1	0	0	12584	838	29	2	236	2	PRKAR1A	17	66518949	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72050	66518949	14676261	3581	22431										
ABCA8	0	genome.wustl.edu	37	chr17	66913593	66913593	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagagaaatactttcctgtCtgaaaaagaagaagagcaaa	10	5	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66913593	66913593	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	splice_site	c.2048-1	e15-1	1.000	-	-	-	no_errors	ABCA8	HGNC	ENSG00000141338	43	0	0	52	8	13.33	-	-	-	T	66913593	C	T	66913593	5	4	240	1	0	0	0	0	0	0	1	0	38	927	32	2	2914	2	ABCA8	17	66913593	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	394644	66913593	14281617	3582	22432										
ABCA8	0	genome.wustl.edu	37	chr17	66920856	66920856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattacctgatggcttctttCccttggaattctggaggcgc	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	66920856	66920856	C	T	SNP	ABCA8	ENST00000589533	human	ensembl	69_37n	-1	known	missense	c.370	p.E124K	0.794	NULL	pfam_ABC_transporter-like,pfam_Ribosome_biogen_GTPase_RsgA,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon	ABCA8	HGNC	ENSG00000141338	136	0	0	134	34	20.24	-	-	-	T	66920856	C	T	66920856	3	4	240	1	0	0	0	0	1	0	0	0	38	842	30	2	3433	2	ABCA8	17	66920856	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7263	66920856	14274354	3583	22433										
ABCA6	0	genome.wustl.edu	37	chr17	67129840	67129840	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcttagacttttttctctCttttgttacattgagtgata	5	6	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	67129840	67129840	C	G	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.733	p.E245Q	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	140	0	0	165	34	17.09	-	-	-	G	67129840	C	G	67129840	3	3	240	1	0	0	0	0	1	0	0	0	36	922	32	2	4256	2	ABCA6	17	67129840	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	208984	67129840	14065370	3584	22434										
ABCA10	0	genome.wustl.edu	37	chr17	67186601	67186601	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctggtcagaacacttatCaaggtcactgtaaagatcta	8	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	67186601	67186601	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.2029	p.D677Y	0.880	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	105	0	0	125	24	16.11	-	-	-	A	67186601	C	A	67186601	3	1	240	1	0	0	0	0	1	0	0	0	29	826	29	2	2690	2	ABCA10	17	67186601	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	56761	67186601	14008609	3585	22435										
ABCA5	0	genome.wustl.edu	37	chr17	67310505	67310505	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattaagtaattcttcagtaGaagtgttctggtctgtctcc	8	7	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	67310505	67310505	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	silent	c.52	p.L18	0.014	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	109	0	0	131	22	14.29	-	-	-	A	67310505	G	A	67310505	2	1	240	1	0	0	0	0	0	0	0	1	35	933	33	2		2	ABCA5	17	67310505	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	123904	67310505	13884705	3586	22436										
SOX9	0	genome.wustl.edu	37	chr17	70117755	70117755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttccccgtgtgcatccgcGaggcggtcagccaggtgctc	14	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	70117755	70117755	G	A	SNP	SOX9	ENST00000245479	human	ensembl	69_37n	1	known	missense	c.223	p.E75K	1.000	pfam_Sox_N	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	23	0	0	24	9	27.27	-	-	-	A	70117755	G	A	70117755	3	1	240	1	0	0	0	0	1	0	0	0	15047	1059	37	1	225	1	SOX9	17	70117755	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2807250	70117755	11077455	3587	22437										
COG1	0	genome.wustl.edu	37	chr17	71202305	71202305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttctcagaattgagaaagtGactgaccacctggaagccct	9	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71202305	71202305	G	C	SNP	COG1	ENST00000438720	human	ensembl	69_37n	1	putative	missense	c.2521	p.D841H	0.026	NULL	pfam_Vps51	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COG1	HGNC	ENSG00000166685	51	0	0	89	22	19.82	-	-	-	C	71202305	G	C	71202305	3	2	240	1	0	0	0	0	1	0	0	0	3687	1277	45	2	2565	2	COG1	17	71202305	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1084550	71202305	9992905	3588	22438										
C17orf80	0	genome.wustl.edu	37	chr17	71231832	71231832	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagctaaagggaaagagttaGagacagagaatgaagaaaga	13	2	0	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71231832	71231832	G	C	SNP	C17orf80	ENST00000359042	human	ensembl	69_37n	1	known	missense	c.211	p.E71Q	0.000	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219	39	0	0	68	12	15	-	-	-	C	71231832	G	C	71231832	3	2	240	1	0	0	0	0	1	0	0	0	1901	943	33	2	213	2	C17orf80	17	71231832	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	29527	71231832	9963378	3589	22439										
SDK2	0	genome.wustl.edu	37	chr17	71390362	71390362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actcaccttatagcccagcaCgagcccgttgcgatcagcct	8	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71390362	71390362	C	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.3694	p.V1232M	0.951	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	44	0	0	65	12	15.58	-	-	-	T	71390362	C	T	71390362	3	4	240	1	0	0	0	0	1	0	0	0	14057	536	19	1	2904	1	SDK2	17	71390362	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	158530	71390362	9804848	3590	22440										
SDK2	0	genome.wustl.edu	37	chr17	71391372	71391372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggcctggacctggacgcGgtactctgtccactcctcca	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71391372	71391372	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.3514	p.R1172C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	22	0	0	48	10	17.24	-	-	-	A	71391372	G	A	71391372	3	1	240	1	0	0	0	0	1	0	0	0	14057	1116	39	1	3088	1	SDK2	17	71391372	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1010	71391372	9803838	3591	22441										
SDK2	0	genome.wustl.edu	37	chr17	71415322	71415322	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctgatgatgtaacccttGagaattccattctggtggct	9	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71415322	71415322	G	C	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	silent	c.2169	p.L723	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	80	0	0	84	14	14.29	-	-	-	C	71415322	G	C	71415322	2	2	240	1	0	0	0	0	0	0	0	1	14057	1277	45	2		2	SDK2	17	71415322	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23950	71415322	9779888	3592	22442										
SDK2	0	genome.wustl.edu	37	chr17	71415334	71415334	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taacccttgagaattccattCtggtggctctcaggaggcgg	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71415334	71415334	C	G	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.2157	p.Q719H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	86	0	0	80	14	14.89	-	-	-	G	71415334	C	G	71415334	3	3	240	1	0	0	0	0	1	0	0	0	14057	912	32	2	4481	2	SDK2	17	71415334	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12	71415334	9779876	3593	22443										
SDK2	0	genome.wustl.edu	37	chr17	71429906	71429906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagctggtcggggcgcccccGaggtctcacatgctagcacc	13	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	71429906	71429906	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1277	p.S426L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	20	0	0	33	18	35.29	-	-	-	A	71429906	G	A	71429906	3	1	240	1	0	0	0	0	1	0	0	0	14057	1059	37	1	5385	1	SDK2	17	71429906	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14572	71429906	9765304	3594	22444										
TTYH2	0	genome.wustl.edu	37	chr17	72218677	72218677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctgggcctgaacctcatCttccttgtggcttacctggt	10	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72218677	72218677	C	G	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	missense	c.183	p.I61M	0.962	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	88	0	0	97	35	26.52	-	-	-	G	72218677	C	G	72218677	3	3	240	1	0	0	0	0	1	0	0	0	16837	903	32	2	189	2	TTYH2	17	72218677	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	788771	72218677	8976533	3595	22445										
TTYH2	0	genome.wustl.edu	37	chr17	72248379	72248379	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcttcctccaggattatCtggacgctcttgctggcatc	8	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72248379	72248379	C	T	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	silent	c.1123	p.L375	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	82	0	0	136	27	16.56	-	-	-	T	72248379	C	T	72248379	2	4	240	1	0	0	0	0	0	0	0	1	16837	912	32	2		2	TTYH2	17	72248379	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29702	72248379	8946831	3596	22446										
GPRC5C	0	genome.wustl.edu	37	chr17	72443133	72443133	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccgaaagacggcaagaactCtcaggtctttagaaacccct	9	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72443133	72443133	C	G	SNP	GPRC5C	ENST00000392627	human	ensembl	69_37n	1	known	missense	c.1427	p.S476C	0.207	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412	27	0	0	60	10	14.29	-	-	-	G	72443133	C	G	72443133	3	3	240	1	0	0	0	0	1	0	0	0	6777	913	32	2	1449	2	GPRC5C	17	72443133	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	194754	72443133	8752077	3597	22447										
CD300A	0	genome.wustl.edu	37	chr17	72470749	72470749	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcatttccacctgtatcatCcactaccctgtttgcagtgg	7	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72470749	72470749	C	A	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	1	known	missense	c.458	p.S153Y	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	68	0	0	119	21	15	-	-	-	A	72470749	C	A	72470749	3	1	240	1	0	0	0	0	1	0	0	0	3025	855	30	2	468	2	CD300A	17	72470749	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	27616	72470749	8724461	3598	22448										
CD300LD	0	genome.wustl.edu	37	chr17	72584893	72584893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgccacttcaagtaggtctCccagcctgagccataagcac	8	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72584893	72584893	C	G	SNP	CD300LD	ENST00000375352	human	ensembl	69_37n	-1	known	missense	c.136	p.E46Q	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LD	HGNC	ENSG00000204345	105	0	0	178	35	16.43	-	-	-	G	72584893	C	G	72584893	3	3	240	1	0	0	0	0	1	0	0	0	3029	864	30	2	460	2	CD300LD	17	72584893	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	114144	72584893	8610317	3599	22449										
NAT9	0	genome.wustl.edu	37	chr17	72771829	72771829	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagcaaggtgttctgattCaacctcatggtagcagcctg	11	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	72771829	72771829	C	G	SNP	NAT9	ENST00000357814	human	ensembl	69_37n	-1	known	missense	c.9	p.L3F	0.999	superfamily_Acyl_CoA_acyltransferase	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	52	0	0	112	19	14.5	-	-	-	G	72771829	C	G	72771829	3	3	240	1	0	0	0	0	1	0	0	0	10254	825	29	2	638	2	NAT9	17	72771829	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	186936	72771829	8423381	3600	22450										
MIF4GD	0	genome.wustl.edu	37	chr17	73265503	73265503	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctggcaaacggaatattCtccatcttctgtctcaaagc	6	13	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73265503	73265503	C	T	SNP	MIF4GD	ENST00000577542	human	ensembl	69_37n	-1	known	missense	c.130	p.E44K	0.069	superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	-	no_errors	MIF4GD	HGNC	ENSG00000125457	82	0	0	127	19	13.01	-	-	-	T	73265503	C	T	73265503	3	4	240	1	0	0	0	0	1	0	0	0	9655	922	32	2	681	2	MIF4GD	17	73265503	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	493674	73265503	7929707	3601	22451										
RECQL5	0	genome.wustl.edu	37	chr17	73623727	73623727	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccttccaggagaggtcttctGagtcagcaagtgtgagaggt	14	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73623727	73623727	G	C	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.2851	p.Q951E	0.351	NULL	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	57	0	0	75	14	15.73	-	-	-	C	73623727	G	C	73623727	3	2	240	1	0	0	0	0	1	0	0	0	13286	1299	45	2	132	2	RECQL5	17	73623727	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	358224	73623727	7571483	3602	22452										
RECQL5	0	genome.wustl.edu	37	chr17	73624334	73624334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctccttgtagaaaggggtGaggcacttgaccacaacatt	10	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73624334	73624334	G	A	SNP	RECQL5	ENST00000581825	human	ensembl	69_37n	-1	putative	missense	c.442	p.H148Y	0.987	NULL	pfam_RecQ_helicase-like_5	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RECQL5	HGNC	ENSG00000108469	39	0	0	82	14	14.43	-	-	-	A	73624334	G	A	73624334	3	1	240	1	0	0	0	0	1	0	0	0	13286	1277	45	2	218	2	RECQL5	17	73624334	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	607	73624334	7570876	3603	22453										
WBP2	0	genome.wustl.edu	37	chr17	73844682	73844682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctggagcatccgctgtccGaactcaatggcgccccctgc	10	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73844682	73844682	G	A	SNP	WBP2	ENST00000586257	human	ensembl	69_37n	-1	putative	missense	c.62	p.S21L	0.966	pfam_WW-domain-binding	pfam_WW-domain-binding	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WBP2	HGNC	ENSG00000132471	61	0	0	65	16	19.75	-	-	-	A	73844682	G	A	73844682	3	1	240	1	0	0	0	0	1	0	0	0	17356	1049	37	1	439	1	WBP2	17	73844682	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	220348	73844682	7350528	3604	22454										
FBF1	0	genome.wustl.edu	37	chr17	73919394	73919394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcagccagtcctctttctCctccttggaggctcgcagct	9	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73919394	73919394	C	T	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.1255	p.E419K	0.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	26	0	0	41	10	19.61	-	-	-	T	73919394	C	T	73919394	3	4	240	1	0	0	0	0	1	0	0	0	5741	864	30	2	2217	2	FBF1	17	73919394	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	74712	73919394	7275816	3605	22455										
FBF1	0	genome.wustl.edu	37	chr17	73929158	73929158	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctagtttaacaggcttctCaggtagtgtcactggaaaaa	10	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73929158	73929158	C	G	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.43	p.E15Q	0.021	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	62	0	0	55	14	20.29	-	-	-	G	73929158	C	G	73929158	3	3	240	1	0	0	0	0	1	0	0	0	5741	835	29	2	3462	2	FBF1	17	73929158	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9764	73929158	7266052	3606	22456										
ACOX1	0	genome.wustl.edu	37	chr17	73945642	73945642	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccttgctttttctgtgaatCacttctttttgaaggttttt	6	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73945642	73945642	C	T	SNP	ACOX1	ENST00000293217	human	ensembl	69_37n	-1	known	silent	c.1518	p.V506	0.969	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533	132	0	0	144	21	12.73	-	-	-	T	73945642	C	T	73945642	2	4	240	1	0	0	0	0	0	0	0	1	158	813	29	2		2	ACOX1	17	73945642	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16484	73945642	7249568	3607	22457										
CDK3	0	genome.wustl.edu	37	chr17	73998136	73998136	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgcacaacgagaggaagctCtatctggtgtttgagttcct	12	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73998136	73998136	C	G	SNP	CDK3	ENST00000425876	human	ensembl	69_37n	1	known	silent	c.228	p.L76	0.817	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK3	HGNC	ENSG00000250506	37	0	0	67	14	17.28	-	-	-	G	73998136	C	G	73998136	2	3	240	1	0	0	0	0	0	0	0	1	3169	900	32	2		2	CDK3	17	73998136	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	52494	73998136	7197074	3608	22458										
CDK3	0	genome.wustl.edu	37	chr17	73998483	73998483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgccttcggggtgcccctgcGcacctacacccatgaggtat	11	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	73998483	73998483	G	A	SNP	CDK3	ENST00000425876	human	ensembl	69_37n	1	known	missense	c.470	p.R157H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK3	HGNC	ENSG00000250506	38	0	0	44	8	15.38	-	-	-	A	73998483	G	A	73998483	3	1	240	1	0	0	0	0	1	0	0	0	3169	1087	38	1	484	1	CDK3	17	73998483	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	347	73998483	7196727	3609	22459										
EVPL	0	genome.wustl.edu	37	chr17	74005361	74005361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttgctcaccgtcttggtctCcaccttggcccgctcgcgcc	9	19	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74005361	74005361	C	G	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.3925	p.E1309Q	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	25	0	0	25	5	16.67	-	-	-	G	74005361	C	G	74005361	3	3	240	1	0	0	0	0	1	0	0	0	5329	864	30	2	2180	2	EVPL	17	74005361	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6878	74005361	7189849	3610	22460										
EVPL	0	genome.wustl.edu	37	chr17	74011098	74011098	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaactcctggaagttgttCtgcagggcagcgcatgcgtg	14	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74011098	74011098	C	G	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.2121	p.Q707H	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	19	0	0	19	7	26.92	-	-	-	G	74011098	C	G	74011098	3	3	240	1	0	0	0	0	1	0	0	0	5329	912	32	2	4004	2	EVPL	17	74011098	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5737	74011098	7184112	3611	22461										
EXOC7	0	genome.wustl.edu	37	chr17	74080128	74080128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctccttgacaatggtcttCtgggcctggcgaatcctgtc	11	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74080128	74080128	C	G	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.2064	p.Q688H	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	60	0	0	93	21	18.42	-	-	-	G	74080128	C	G	74080128	3	3	240	1	0	0	0	0	1	0	0	0	5346	912	32	2	151	2	EXOC7	17	74080128	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	69030	74080128	7115082	3612	22462										
EXOC7	0	genome.wustl.edu	37	chr17	74081799	74081799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taattgtagttgttgtgcagGaagatggcgctcagagctgg	15	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74081799	74081799	G	T	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.1728	p.F576L	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	85	0	0	103	22	17.6	-	-	-	T	74081799	G	T	74081799	3	4	240	1	0	0	0	0	1	0	0	0	5346	1165	41	2	503	2	EXOC7	17	74081799	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1671	74081799	7113411	3613	22463										
QRICH2	0	genome.wustl.edu	37	chr17	74274261	74274261	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccgagggaaggcgctgccCagcttgaggctgcagggtgt	17	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74274261	74274261	C	T	SNP	QRICH2	ENST00000532549	human	ensembl	69_37n	-1	putative	nonsense	c.371	p.W124*	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QRICH2	HGNC	ENSG00000129646	40	0	0	41	13	24.07	-	-	-	T	74274261	C	T	74274261	4	4	240	1	0	0	0	0	0	1	0	0	12963	581	21	4	583	4	QRICH2	17	74274261	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	192462	74274261	6920949	3614	22464										
QRICH2	0	genome.wustl.edu	37	chr17	74287895	74287895	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatatgcaccaggttgtctCaaaccatactgatccattcc	6	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74287895	74287895	C	G	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.2415	p.L805F	0.005	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	54	0	0	79	18	18.56	-	-	-	G	74287895	C	G	74287895	3	3	240	1	0	0	0	0	1	0	0	0	12963	825	29	2	2640	2	QRICH2	17	74287895	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13634	74287895	6907315	3615	22465										
QRICH2	0	genome.wustl.edu	37	chr17	74290028	74290028	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggttgcttggtagagtctccGcttagagtcccttcaggtga	13	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74290028	74290028	G	A	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	silent	c.282	p.S94	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	53	0	0	62	17	21.52	-	-	-	A	74290028	G	A	74290028	2	1	240	1	0	0	0	0	0	0	0	1	12963	1078	38	1		1	QRICH2	17	74290028	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2133	74290028	6905182	3616	22466										
RHBDF2	0	genome.wustl.edu	37	chr17	74472980	74472980	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcggcggtagctgcggttCagccagttgcccaccacgcc	13	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74472980	74472980	C	T	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	silent	c.1134	p.L378	0.997	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	18	0	0	20	9	31.03	-	-	-	T	74472980	C	T	74472980	2	4	240	1	0	0	0	0	0	0	0	1	13404	813	29	2		2	RHBDF2	17	74472980	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	182952	74472980	6722230	3617	22467										
MGAT5B	0	genome.wustl.edu	37	chr17	74900401	74900401	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtggacggcaccgagtgctCcttcctcatctacctcagtg	11	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	74900401	74900401	C	G	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.620	p.S207C	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	20	0	0	24	6	20	-	-	-	G	74900401	C	G	74900401	3	3	240	1	0	0	0	0	1	0	0	0	9620	855	30	2	710	2	MGAT5B	17	74900401	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	427421	74900401	6294809	3618	22468										
TMC6	0	genome.wustl.edu	37	chr17	76122675	76122675	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactggctctgctcctggatGagctgctggaaggagtcgtg	15	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	76122675	76122675	G	A	SNP	TMC6	ENST00000586126	human	ensembl	69_37n	-1	known	missense	c.59	p.S20L	1.000	NULL	NULL	-	no_errors	TMC6	HGNC	ENSG00000141524	47	0	0	62	15	19.23	-	-	-	A	76122675	G	A	76122675	3	1	240	1	0	0	0	0	1	0	0	0	16084	1277	45	2	2378	2	TMC6	17	76122675	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1222274	76122675	5072535	3619	22469										
SYNGR2	0	genome.wustl.edu	37	chr17	76166959	76166959	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacagcaatgcccacgagtCtaagcagatgtactgcgtgt	10	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	76166959	76166959	C	G	SNP	SYNGR2	ENST00000225777	human	ensembl	69_37n	1	known	missense	c.161	p.S54C	0.001	pfam_MARVEL-like_dom,pirsf_Synaptogyrin	pfam_MARVEL-like_dom,pirsf_Synaptogyrin	-	no_errors	SYNGR2	HGNC	ENSG00000108639	46	0	0	50	16	24.24	-	-	-	G	76166959	C	G	76166959	3	3	240	1	0	0	0	0	1	0	0	0	15541	913	32	2	167	2	SYNGR2	17	76166959	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44284	76166959	5028251	3620	22470										
DNAH17	0	genome.wustl.edu	37	chr17	76422615	76422615	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccgggccacccacgtatCaggcacggtgtcatagaaga	13	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	76422615	76422615	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.12907	p.D4303Y	0.548	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	41	0	0	31	16	34.04	-	-	-	A	76422615	C	A	76422615	3	1	240	1	0	0	0	0	1	0	0	0	4637	826	29	2	562	2	DNAH17	17	76422615	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	255656	76422615	4772595	3621	22471										
DNAH17	0	genome.wustl.edu	37	chr17	76495140	76495140	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagatgcgattaaactcgtCaaagcagccccaggctcccg	10	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	76495140	76495140	C	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.5653	p.D1885H	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	51	0	0	41	13	24.07	-	-	-	G	76495140	C	G	76495140	3	3	240	1	0	0	0	0	1	0	0	0	4637	826	29	2	7873	2	DNAH17	17	76495140	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72525	76495140	4700070	3622	22472										
DNAH17	0	genome.wustl.edu	37	chr17	76557921	76557921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagggggatgttcccctcctCggaggccgccatctgggcat	14	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	76557921	76557921	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	0.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	27	0	0	36	16	30.77	-	-	-	T	76557921	C	T	76557921	3	4	240	1	0	0	0	0	1	0	0	0	4637	893	31	1	11957	1	DNAH17	17	76557921	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62781	76557921	4637289	3623	22473										
CBX4	0	genome.wustl.edu	37	chr17	77809493	77809493	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctctcttccgatatcccatCagctgctcctgccgttccct	5	19	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	77809493	77809493	C	A	SNP	CBX4	ENST00000495122	human	ensembl	69_37n	-1	putative	missense	c.64	p.D22Y	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	CBX4	HGNC	ENSG00000141582	55	0	0	28	9	24.32	-	-	-	A	77809493	C	A	77809493	3	1	240	1	0	0	0	0	1	0	0	0	2745	813	29	2	1492	2	CBX4	17	77809493	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1251572	77809493	3385717	3624	22474										
CCDC40	0	genome.wustl.edu	37	chr17	78013794	78013794	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggagatgctgaaagcgaaGaggaatattactatacagaa	11	4	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	78013794	78013794	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	missense	c.277	p.E93K	0.003	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	46	0	0	27	13	32.5	-	-	-	A	78013794	G	A	78013794	3	1	240	1	0	0	0	0	1	0	0	0	2838	943	33	2	287	2	CCDC40	17	78013794	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204301	78013794	3181416	3625	22475										
RNF213	0	genome.wustl.edu	37	chr17	78363039	78363039	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcctacagcgatgcctgtGaagtgctgtctgtcgtagaa	12	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	78363039	78363039	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.15067	p.E5023K	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	95	0	0	67	30	30.93	-	-	-	A	78363039	G	A	78363039	3	1	240	1	0	0	0	0	1	0	0	0	13563	1291	45	2	15640	2	RNF213	17	78363039	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	349245	78363039	2832171	3626	22476										
RPTOR	0	genome.wustl.edu	37	chr17	78811744	78811744	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagcctgggacctggctgttGacatctgtctgtctcagctg	12	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	78811744	78811744	G	C	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.1159	p.D387H	1.000	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	66	0	0	36	15	29.41	-	-	-	C	78811744	G	C	78811744	3	2	240	1	0	0	0	0	1	0	0	0	13751	1290	45	2	1197	2	RPTOR	17	78811744	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	448705	78811744	2383466	3627	22477										
HGS	0	genome.wustl.edu	37	chr17	79660949	79660949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggcggagcccatgccctCggcctcctcagcgccccccg	11	21	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	79660949	79660949	C	T	SNP	HGS	ENST00000329138	human	ensembl	69_37n	1	known	missense	c.890	p.S297L	0.967	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	30	0	0	12	8	40	-	-	-	T	79660949	C	T	79660949	3	4	240	1	0	0	0	0	1	0	0	0	7138	893	31	1	932	1	HGS	17	79660949	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	849205	79660949	1534261	3628	22478										
ANAPC11	0	genome.wustl.edu	37	chr17	79852414	79852414	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctctgggtggccaacgatGagaactgtggcatctgcagg	16	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	79852414	79852414	G	C	SNP	ANAPC11	ENST00000357385	human	ensembl	69_37n	1	known	missense	c.61	p.E21Q	1.000	NULL	NULL	-	no_errors	ANAPC11	HGNC	ENSG00000141552	45	0	0	42	20	32.26	-	-	-	C	79852414	G	C	79852414	3	2	240	1	0	0	0	0	1	0	0	0	600	1291	45	2	63	2	ANAPC11	17	79852414	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	191465	79852414	1342796	3629	22479										
PYCR1	0	genome.wustl.edu	37	chr17	79890827	79890827	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccgggctcccgagctctaGaggaaggtggtcctgacatg	14	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	79890827	79890827	G	C	SNP	PYCR1	ENST00000337943	human	ensembl	69_37n	-1	known	missense	c.880	p.L294V	0.000	NULL	pfam_NADP_OxRdtase_F420,pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR1	HGNC	ENSG00000183010	69	0	0	18	12	40	-	-	-	C	79890827	G	C	79890827	3	2	240	1	0	0	0	0	1	0	0	0	12938	933	33	2	74	2	PYCR1	17	79890827	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38413	79890827	1304383	3630	22480										
ASPSCR1	0	genome.wustl.edu	37	chr17	79952733	79952733	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccggcggggccaccccagtCtgcgtgtacacgagggatga	15	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	79952733	79952733	C	T	SNP	ASPSCR1	ENST00000579684	human	ensembl	69_37n	1	putative	missense	c.353	p.S118F	0.877	NULL	pfam_TUG	-	no_start_codon:pseudogene:no_stop_codon	ASPSCR1	HGNC	ENSG00000169696	35	0	0	27	6	18.18	-	-	-	T	79952733	C	T	79952733	3	4	240	1	0	0	0	0	1	0	0	0	1063	900	32	2	429	2	ASPSCR1	17	79952733	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	61906	79952733	1242477	3631	22481										
FASN	0	genome.wustl.edu	37	chr17	80039546	80039546	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctataggccgcagccttctCagccagcacaaagctgctca	8	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	80039546	80039546	C	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.6337	p.E2113K	0.998	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	10	0	0	17	6	26.09	-	-	-	T	80039546	C	T	80039546	3	4	240	1	0	0	0	0	1	0	0	0	5729	835	29	2	1226	2	FASN	17	80039546	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86813	80039546	1155664	3632	22482										
FASN	0	genome.wustl.edu	37	chr17	80040285	80040285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctccagcaagccatctctCaagacctgggggaggcatcc	10	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	80040285	80040285	C	G	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.5925	p.L1975F	1.000	pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,smart_PKS/FAS_KR	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	28	0	0	37	16	30.19	-	-	-	G	80040285	C	G	80040285	3	3	240	1	0	0	0	0	1	0	0	0	5729	825	29	2	1646	2	FASN	17	80040285	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	739	80040285	1154925	3633	22483										
FASN	0	genome.wustl.edu	37	chr17	80041112	80041112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccaatgtgcttcccttggGccatgtagcggaaggcgtcc	13	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	80041112	80041112	G	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.5531	p.A1844D	1.000	smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	27	0	0	24	12	32.43	-	-	-	T	80041112	G	T	80041112	3	4	240	1	0	0	0	0	1	0	0	0	5729	1203	42	4	2052	4	FASN	17	80041112	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	827	80041112	1154098	3634	22484										
METRNL	0	genome.wustl.edu	37	chr17	81042910	81042910	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtacccaacaggtgctctCatcgttaacctgcggcccaa	8	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	17	81042910	81042910	C	G	SNP	METRNL	ENST00000320095	human	ensembl	69_37n	1	known	silent	c.267	p.L89	1.000	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845	69	0	0	82	16	16.33	-	-	-	G	81042910	C	G	81042910	2	3	240	1	0	0	0	0	0	0	0	1	9560	813	29	2		2	METRNL	17	81042910	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1001798	81042910	152300	3635	22485										
THOC1	0	genome.wustl.edu	37	chr18	216572	216572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttggttggctggaagaagtGagggcttctccgtgctaata	15	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	216572	216572	G	A	SNP	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	missense	c.1516	p.H506Y	1.000	NULL	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	128	0	0	45	21	31.82	-	-	-	A	216572	G	A	216572	3	1	240	1	0	0	0	0	1	0	0	0	15959	1290	45	2	469	2	THOC1	18	216572	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		216572	77860676	3636	22486										
LPIN2	0	genome.wustl.edu	37	chr18	2960673	2960673	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctttggatctcaggactcCcagctttccaaaccgaacgt	7	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	2960673	2960673	C	A	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	nonsense	c.166	p.G56*	1.000	pfam_Lipin_N	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	82	0	0	38	17	30.91	-	-	-	A	2960673	C	A	2960673	4	1	240	1	0	0	0	0	0	1	0	0	8985	632	22	4	2600	4	LPIN2	18	2960673	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2744101	2960673	75116575	3637	22487										
MYOM1	0	genome.wustl.edu	37	chr18	3188817	3188817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgacttcttttcagaagtttCttcctgttgaagagcggatg	10	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	3188817	3188817	C	G	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.700	p.E234Q	0.682	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	247	0	0	138	76	35.51	-	-	-	G	3188817	C	G	3188817	3	3	240	1	0	0	0	0	1	0	0	0	10163	922	32	2	4497	2	MYOM1	18	3188817	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	228144	3188817	74888431	3638	22488										
EPB41L3	0	genome.wustl.edu	37	chr18	5398129	5398129	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catccatgagcttttccccaGaagactgcttagtctgagtg	9	11	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	5398129	5398129	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.2363	p.S788F	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	71	0	0	23	21	47.73	-	-	-	A	5398129	G	A	5398129	3	1	240	1	0	0	0	0	1	0	0	0	5191	942	33	2	924	2	EPB41L3	18	5398129	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2209312	5398129	72679119	3639	22489										
TMEM200C	0	genome.wustl.edu	37	chr18	5890387	5890387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcggccacagcagagtctCgcgtttgaccagctactgcg	14	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	5890387	5890387	C	T	SNP	TMEM200C	ENST00000383490	human	ensembl	69_37n	-1	known	missense	c.1676	p.R559Q	0.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432	26	0	0	16	8	33.33	-	-	-	T	5890387	C	T	5890387	3	4	240	1	0	0	0	0	1	0	0	0	16220	884	31	1	193	1	TMEM200C	18	5890387	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	492258	5890387	72186861	3640	22490										
ARHGAP28	0	genome.wustl.edu	37	chr18	6908960	6908960	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attttctcatttttttcagtCatggttcatcagaatgtatt	5	6	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	6908960	6908960	C	T	SNP	ARHGAP28	ENST00000314319	human	ensembl	69_37n	1	known	missense	c.1555	p.H519Y	0.997	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	69	0	0	32	24	42.86	-	-	-	T	6908960	C	T	6908960	3	4	240	1	0	0	0	0	1	0	0	0	879	840	29	2	1756	2	ARHGAP28	18	6908960	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1018573	6908960	71168288	3641	22491										
LAMA1	0	genome.wustl.edu	37	chr18	7050797	7050797	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttggagttatattgtaacGagacaaacactctgagtcgc	9	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	7050797	7050797	G	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.484	p.R162G	0.780	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	101	0	0	36	13	26.53	-	-	-	C	7050797	G	C	7050797	3	2	240	1	0	0	0	0	1	0	0	0	8659	1058	37	3	8983	3	LAMA1	18	7050797	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	141837	7050797	71026451	3642	22492										
RAB12	0	genome.wustl.edu	37	chr18	8638171	8638171	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctggatattttaaggaatGagttgtccaatagtatcctg	9	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	8638171	8638171	G	A	SNP	RAB12	ENST00000329286	human	ensembl	69_37n	1	known	missense	c.646	p.E216K	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB12	HGNC	ENSG00000206418	111	0	0	36	19	34.55	-	-	-	A	8638171	G	A	8638171	3	1	240	1	0	0	0	0	1	0	0	0	12981	1291	45	2	668	2	RAB12	18	8638171	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1587374	8638171	69439077	3643	22493										
SEH1L	0	genome.wustl.edu	37	chr18	12971224	12971224	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgcaatggccaaggttcaGatttttgaatataatgaaaa	8	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	12971224	12971224	G	C	SNP	SEH1L	ENST00000399892	human	ensembl	69_37n	1	known	missense	c.594	p.Q198H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEH1L	HGNC	ENSG00000085415	125	0	0	68	25	26.88	-	-	-	C	12971224	G	C	12971224	3	2	240	1	0	0	0	0	1	0	0	0	14097	933	33	2	612	2	SEH1L	18	12971224	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4333053	12971224	65106024	3644	22494										
MIB1	0	genome.wustl.edu	37	chr18	19353670	19353670	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtgctaagaacctttacaGagttggctttgagggcatgg	14	6	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	19353670	19353670	G	A	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.617	p.R206K	1.000	pfam_Mib_Herc2	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	85	0	0	33	15	31.25	-	-	-	A	19353670	G	A	19353670	3	1	240	1	0	0	0	0	1	0	0	0	9637	942	33	2	631	2	MIB1	18	19353670	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6382446	19353670	58723578	3645	22495										
MIB1	0	genome.wustl.edu	37	chr18	19424122	19424122	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atactcctttgcatgaagctCtaaggcatcacactttgtct	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	19424122	19424122	C	G	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.2119	p.L707V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	99	0	0	61	31	33.7	-	-	-	G	19424122	C	G	19424122	3	3	240	1	0	0	0	0	1	0	0	0	9637	912	32	2	2177	2	MIB1	18	19424122	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70452	19424122	58653126	3646	22496										
LAMA3	0	genome.wustl.edu	37	chr18	21501525	21501525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcacatattatctgggagGaattccaattgcaatcaggg	10	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	21501525	21501525	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.8153	p.G2718E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	114	0	0	43	19	30.65	-	-	-	A	21501525	G	A	21501525	3	1	240	1	0	0	0	0	1	0	0	0	8661	1174	41	2	8574	2	LAMA3	18	21501525	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2077403	21501525	56575723	3647	22497										
ZNF521	0	genome.wustl.edu	37	chr18	22804334	22804334	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgactgggagggactgattCtgggcattggtgatacttgg	16	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	22804334	22804334	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	missense	c.3548	p.R1183K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	77	0	0	51	21	29.17	-	-	-	T	22804334	C	T	22804334	3	4	240	1	0	0	0	0	1	0	0	0	18061	913	32	2	407	2	ZNF521	18	22804334	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1302809	22804334	55272914	3648	22498										
ZNF521	0	genome.wustl.edu	37	chr18	22805296	22805296	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggactcctggctgttggtCagcaaagtctgcagctccac	12	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	22805296	22805296	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.2586	p.L862	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	202	0	0	100	40	28.57	-	-	-	T	22805296	C	T	22805296	2	4	240	1	0	0	0	0	0	0	0	1	18061	813	29	2		2	ZNF521	18	22805296	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	962	22805296	55271952	3649	22499										
SS18	0	genome.wustl.edu	37	chr18	23619393	23619393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggcatattgtattgctgaGaaggaggctgctgatgcatc	14	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	23619393	23619393	G	C	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	missense	c.635	p.S212C	1.000	NULL	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	110	0	0	63	27	30	-	-	-	C	23619393	G	C	23619393	3	2	240	1	0	0	0	0	1	0	0	0	15266	942	33	2	645	2	SS18	18	23619393	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	814097	23619393	54457855	3650	22500										
KCTD1	0	genome.wustl.edu	37	chr18	24081182	24081182	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagatgcaggggatctagtGatcagaggtcttgacatatt	14	5	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	24081182	24081182	G	A	SNP	KCTD1	ENST00000417602	human	ensembl	69_37n	-1	known	silent	c.1842	p.I614	1.000	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504	226	0	0	112	57	33.73	-	-	-	A	24081182	G	A	24081182	2	1	240	1	0	0	0	0	0	0	0	1	8150	1280	45	2		2	KCTD1	18	24081182	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	461789	24081182	53996066	3651	22501										
KCTD1	0	genome.wustl.edu	37	chr18	24127738	24127738	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggttggcgctgcgcagctCggggtccttggtgaggtcga	18	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	24127738	24127738	C	G	SNP	KCTD1	ENST00000417602	human	ensembl	69_37n	-1	known	missense	c.763	p.E255Q	1.000	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504	47	0	0	24	11	31.43	-	-	-	G	24127738	C	G	24127738	3	3	240	1	0	0	0	0	1	0	0	0	8150	893	31	3	1854	3	KCTD1	18	24127738	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46556	24127738	53949510	3652	22502										
CDH2	0	genome.wustl.edu	37	chr18	25589823	25589823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagtgaaaggtttttatctCtatcagacctgatctgagga	10	7	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	25589823	25589823	C	G	SNP	CDH2	ENST00000269141	human	ensembl	69_37n	-1	known	missense	c.560	p.R187T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558	52	0	0	18	12	40	-	-	-	G	25589823	C	G	25589823	3	3	240	1	0	0	0	0	1	0	0	0	3134	913	32	2	2208	2	CDH2	18	25589823	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1462085	25589823	52487425	3653	22503										
RNF138	0	genome.wustl.edu	37	chr18	29704794	29704794	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaacagtaatcacctatttCagatagttcctgtggtaagt	8	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	29704794	29704794	C	G	SNP	RNF138	ENST00000261593	human	ensembl	69_37n	1	known	missense	c.547	p.Q183E	1.000	smart_Znf_RING	pfam_Znf_MIZ,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF138	HGNC	ENSG00000134758	170	0	0	62	24	27.91	-	-	-	G	29704794	C	G	29704794	3	3	240	1	0	0	0	0	1	0	0	0	13527	827	29	2	565	2	RNF138	18	29704794	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4114971	29704794	48372454	3654	22504										
C18orf34	0	genome.wustl.edu	37	chr18	30873229	30873229	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagtattaacatttatcactGatgaagagtaatgatcaaat	6	4	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	30873229	30873229	G	A	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	missense	c.1070	p.S357L	0.001	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	190	0	0	72	40	35.71	-	-	-	A	30873229	G	A	30873229	3	1	240	1	0	0	0	0	1	0	0	0	1919	1294	45	2	1581	2	C18orf34	18	30873229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1168435	30873229	47204019	3655	22505										
NOL4	0	genome.wustl.edu	37	chr18	31523138	31523138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaggtgggaaggaataggtCgagactaaaaaaaaaaagag	13	2	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	31523138	31523138	C	T	SNP	NOL4	ENST00000261592	human	ensembl	69_37n	-1	known	missense	c.1433	p.R478Q	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746	43	0	0	22	12	35.29	-	-	-	T	31523138	C	T	31523138	3	4	240	1	0	0	0	0	1	0	0	0	10596	884	31	1	495	1	NOL4	18	31523138	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	649909	31523138	46554110	3656	22506										
DTNA	0	genome.wustl.edu	37	chr18	32345992	32345992	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcaagcttaggtttgttcaGaagaaatgcaattgtaagta	10	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	32345992	32345992	G	C	SNP	DTNA	ENST00000269190	human	ensembl	69_37n	1	known	missense	c.135	p.Q45H	1.000	pfam_EF-hand_dom_typ1,pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769	86	0	0	53	19	26.39	-	-	-	C	32345992	G	C	32345992	3	2	240	1	0	0	0	0	1	0	0	0	4823	933	33	2	141	2	DTNA	18	32345992	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	822854	32345992	45731256	3657	22507										
ZNF397	0	genome.wustl.edu	37	chr18	32825835	32825835	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatctcattatacatcaaaGaattcacactggtgagaaac	5	8	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	32825835	32825835	G	C	SNP	ZNF397	ENST00000330501	human	ensembl	69_37n	1	known	missense	c.1166	p.R389T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	57	0	0	21	14	40	-	-	-	C	32825835	G	C	32825835	3	2	240	1	0	0	0	0	1	0	0	0	17979	942	33	2	1176	2	ZNF397	18	32825835	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	479843	32825835	45251413	3658	22508										
ZNF396	0	genome.wustl.edu	37	chr18	32954210	32954210	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaatcccattacactcctctGaagtttgtgttaggagtgat	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	32954210	32954210	G	A	SNP	ZNF396	ENST00000589332	human	ensembl	69_37n	-1	known	missense	c.47	p.S16L	0.004	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF396	HGNC	ENSG00000186496	46	0	0	12	23	65.71	-	-	-	A	32954210	G	A	32954210	3	1	240	1	0	0	0	0	1	0	0	0	17978	1294	45	2	970	2	ZNF396	18	32954210	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128375	32954210	45123038	3659	22509										
SLC39A6	0	genome.wustl.edu	37	chr18	33689702	33689702	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcatcattgtgcagcatttCaggtacctttaaaaaaaagt	7	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	33689702	33689702	C	T	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	missense	c.2122	p.E708K	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	73	0	0	32	15	31.91	-	-	-	T	33689702	C	T	33689702	3	4	240	1	0	0	0	0	1	0	0	0	14711	835	29	2	149	2	SLC39A6	18	33689702	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	735492	33689702	44387546	3660	22510										
ELP2	0	genome.wustl.edu	37	chr18	33709951	33709951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgctgcccaaaccgggtgCggggagtcctgaactggagc	15	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	33709951	33709951	C	T	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	missense	c.55	p.R19W	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	50	0	0	32	11	25.58	-	-	-	T	33709951	C	T	33709951	3	4	240	1	0	0	0	0	1	0	0	0	5117	759	27	1	57	1	ELP2	18	33709951	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20249	33709951	44367297	3661	22511										
KIAA1328	0	genome.wustl.edu	37	chr18	34647462	34647462	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagcaggagacaaagcttCttctaaaacagcagcagctt	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	34647462	34647462	C	T	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	missense	c.1186	p.L396F	0.994	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	40	0	0	27	11	28.95	-	-	-	T	34647462	C	T	34647462	3	4	240	1	0	0	0	0	1	0	0	0	8277	913	32	2	1212	2	KIAA1328	18	34647462	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	937511	34647462	43429786	3662	22512										
KIAA1328	0	genome.wustl.edu	37	chr18	34802029	34802029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtctctgagcccaaactctGcgcccaaacctcagcgctat	7	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	34802029	34802029	G	A	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	missense	c.1573	p.A525T	0.999	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	129	0	0	38	59	60.82	-	-	-	A	34802029	G	A	34802029	3	1	240	1	0	0	0	0	1	0	0	0	8277	1319	46	4	1611	4	KIAA1328	18	34802029	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	154567	34802029	43275219	3663	22513										
CELF4	0	genome.wustl.edu	37	chr18	35145335	35145335	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacctttgtgcatgcctgtGaacctgtccttcagaaccgt	8	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	35145335	35145335	G	T	SNP	CELF4	ENST00000361795	human	ensembl	69_37n	-1	known	missense	c.270	p.F90L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489	69	0	0	24	14	36.84	-	-	-	T	35145335	G	T	35145335	3	4	240	1	0	0	0	0	1	0	0	0	3247	1281	45	2	1238	2	CELF4	18	35145335	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	343306	35145335	42931913	3664	22514										
PIK3C3	0	genome.wustl.edu	37	chr18	39567853	39567853	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acatttagagaaatagaaatGataaatgaggtgggttatat	10	1	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	39567853	39567853	G	T	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.609	p.M203I	1.000	pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	94	0	0	36	11	23.4	-	-	-	T	39567853	G	T	39567853	3	4	240	1	0	0	0	0	1	0	0	0	11986	1290	45	2	627	2	PIK3C3	18	39567853	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4422518	39567853	38509395	3665	22515										
PIK3C3	0	genome.wustl.edu	37	chr18	39623707	39623707	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcttttcagaacttttttaGaaaatatgcaccaagtgaga	7	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	39623707	39623707	G	C	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.2114	p.R705T	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	124	0	0	50	38	43.18	-	-	-	C	39623707	G	C	39623707	3	2	240	1	0	0	0	0	1	0	0	0	11986	942	33	2	2192	2	PIK3C3	18	39623707	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	55854	39623707	38453541	3666	22516										
PIAS2	0	genome.wustl.edu	37	chr18	44398376	44398376	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaagatgttccaagcttCagttcattattaatatcatt	5	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	44398376	44398376	C	T	SNP	PIAS2	ENST00000324794	human	ensembl	69_37n	-1	known	silent	c.1683	p.L561	0.996	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	219	1	0.45	30	49	62.03	-	-	-	T	44398376	C	T	44398376	2	4	240	1	0	0	0	0	0	0	0	1	11950	813	29	2		2	PIAS2	18	44398376	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4774669	44398376	33678872	3667	22517										
TCEB3B	0	genome.wustl.edu	37	chr18	44561197	44561197	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctctgggctcgcgactgtGagacctcgggtgaggtctct	15	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	44561197	44561197	G	T	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.439	p.H147N	0.001	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	89	0	0	56	26	31.71	-	-	-	T	44561197	G	T	44561197	3	4	240	1	0	0	0	0	1	0	0	0	15777	1290	45	2	1826	2	TCEB3B	18	44561197	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	162821	44561197	33516051	3668	22518										
MYO5B	0	genome.wustl.edu	37	chr18	47438438	47438438	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgtgtggctcaccttgatGaggttctccaggacagacct	12	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	47438438	47438438	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	silent	c.2196	p.L732	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	114	0	0	51	22	30.14	-	-	-	A	47438438	G	A	47438438	2	1	240	1	0	0	0	0	0	0	0	1	10151	1277	45	2		2	MYO5B	18	47438438	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2877241	47438438	30638810	3669	22519										
SKA1	0	genome.wustl.edu	37	chr18	47908574	47908574	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgttccttcccatttgcctCaagtaacagtaacccagagc	6	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	47908574	47908574	C	T	SNP	SKA1	ENST00000285116	human	ensembl	69_37n	1	known	nonsense	c.289	p.Q97*	0.999	pfam_DUF1395	pfam_DUF1395	-	no_errors	SKA1	HGNC	ENSG00000154839	73	0	0	33	12	26.09	-	-	-	T	47908574	C	T	47908574	4	4	240	1	0	0	0	0	0	1	0	0	14441	827	29	2	299	2	SKA1	18	47908574	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	470136	47908574	30168674	3670	22520										
ME2	0	genome.wustl.edu	37	chr18	48465962	48465962	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggctttagctgttattctCtgtaacacccggcatattag	9	9	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	48465962	48465962	C	T	SNP	ME2	ENST00000321341	human	ensembl	69_37n	1	known	silent	c.1440	p.L480	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	165	0	0	70	25	26.32	-	-	-	T	48465962	C	T	48465962	2	4	240	1	0	0	0	0	0	0	0	1	9489	900	32	2		2	ME2	18	48465962	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	557388	48465962	29611286	3671	22521										
ELAC1	0	genome.wustl.edu	37	chr18	48513353	48513353	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccagagaaggagaaacagaTggcattgcagaactaaaaaa	11	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	48513353	48513353	T	A	SNP	ELAC1	ENST00000269466	human	ensembl	69_37n	1	known	missense	c.990	p.D330E	1.000	NULL	pfam_Beta-lactamas-like,tigrfam_RNase_Z	-	no_errors	ELAC1	HGNC	ENSG00000141642	46	0	0	20	11	35.48	-	-	-	A	48513353	T	A	48513353	3	1	240	1	0	0	0	0	1	0	0	0	5083	1461	51	5	1000	5	ELAC1	18	48513353	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	47391	48513353	29563895	3672	22522										
SMAD4	0	genome.wustl.edu	37	chr18	48575200	48575200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtctgtgtgaatccatatCactacgaacgagttgtatca	9	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	48575200	48575200	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	missense	c.394	p.H132Y	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	101	0	0	59	21	26.25	-	-	-	T	48575200	C	T	48575200	3	4	240	1	0	0	0	0	1	0	0	0	14849	826	29	2	400	2	SMAD4	18	48575200	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	61847	48575200	29502048	3673	22523										
MEX3C	0	genome.wustl.edu	37	chr18	48703903	48703903	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaccacgaacaggagtcttGatatacgtgtttgtcttggc	10	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	48703903	48703903	G	C	SNP	MEX3C	ENST00000406189	human	ensembl	69_37n	-1	known	missense	c.798	p.I266M	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	64	0	0	25	11	30.56	-	-	-	C	48703903	G	C	48703903	3	2	240	1	0	0	0	0	1	0	0	0	9582	1280	45	2	1185	2	MEX3C	18	48703903	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128703	48703903	29373345	3674	22524										
DCC	0	genome.wustl.edu	37	chr18	50918123	50918123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccaccagtaggtgtacagGctgtggctcttacccatgat	10	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	50918123	50918123	G	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.2554	p.A852T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	72	0	0	32	17	34.69	-	-	-	A	50918123	G	A	50918123	3	1	240	1	0	0	0	0	1	0	0	0	4313	1203	42	4	2620	4	DCC	18	50918123	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2214220	50918123	27159125	3675	22525										
C18orf26	0	genome.wustl.edu	37	chr18	52265215	52265215	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacaaatgatggagagtgtGtgactgtcaaacctggaaca	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	52265215	52265215	G	C	SNP	C18orf26	ENST00000321600	human	ensembl	69_37n	1	known	missense	c.472	p.V158L	0.000	NULL	NULL	-	no_errors	C18orf26	HGNC	ENSG00000178690	100	0	0	46	25	35.21	-	-	-	C	52265215	G	C	52265215	3	2	240	1	0	0	0	0	1	0	0	0	1917	1377	48	4	482	4	C18orf26	18	52265215	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1347092	52265215	25812033	3676	22526										
ONECUT2	0	genome.wustl.edu	37	chr18	55103430	55103430	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagccgctgccacccatctCcaccgtgtctgacaagttcc	7	19	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	55103430	55103430	C	G	SNP	ONECUT2	ENST00000262095	human	ensembl	69_37n	1	known	missense	c.482	p.S161C	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547	51	0	0	35	17	32.69	-	-	-	G	55103430	C	G	55103430	3	3	240	1	0	0	0	0	1	0	0	0	10942	855	30	2	484	2	ONECUT2	18	55103430	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2838215	55103430	22973818	3677	22527										
ALPK2	0	genome.wustl.edu	37	chr18	56202473	56202473	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaatgccaaggtcttcgctGaggagctagatgagcttggg	14	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	56202473	56202473	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.4946	p.S1649L	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	45	0	0	24	13	35.14	-	-	-	A	56202473	G	A	56202473	3	1	240	1	0	0	0	0	1	0	0	0	545	1294	45	2	1602	2	ALPK2	18	56202473	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1099043	56202473	21874775	3678	22528										
ALPK2	0	genome.wustl.edu	37	chr18	56203456	56203456	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacttctccaatgtacactGatggtgggctcttcgccttt	9	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	56203456	56203456	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	silent	c.3963	p.I1321	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	81	0	0	35	20	36.36	-	-	-	A	56203456	G	A	56203456	2	1	240	1	0	0	0	0	0	0	0	1	545	1280	45	2		2	ALPK2	18	56203456	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	983	56203456	21873792	3679	22529										
MALT1	0	genome.wustl.edu	37	chr18	56400770	56400770	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgcaagaaaaagaaactgGacttaatgtgttcttattgg	10	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	56400770	56400770	G	C	SNP	MALT1	ENST00000348428	human	ensembl	69_37n	1	known	missense	c.1364	p.G455A	1.000	pfam_Pept_C14_cat	pfam_Pept_C14_cat,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_DEATH-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Pept_C14_ICE_p20,pfscan_Ig-like	-	no_errors	MALT1	HGNC	ENSG00000172175	108	0	0	56	21	27.27	-	-	-	C	56400770	G	C	56400770	3	2	240	1	0	0	0	0	1	0	0	0	9273	1174	41	2	1406	2	MALT1	18	56400770	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	197314	56400770	21676478	3680	22530										
GRP	0	genome.wustl.edu	37	chr18	56892941	56892941	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagaggatagcagcaacttCaaagatgtaggttcaaaagg	11	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	56892941	56892941	C	G	SNP	GRP	ENST00000456142	human	ensembl	69_37n	1	novel	nonsense	c.218	p.S73*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GRP	HGNC	ENSG00000134443	77	0	0	56	10	15.15	-	-	-	G	56892941	C	G	56892941	4	3	240	1	0	0	0	0	0	1	0	0	6856	825	29	2	363	2	GRP	18	56892941	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	492171	56892941	21184307	3681	22531										
CDH20	0	genome.wustl.edu	37	chr18	59195263	59195263	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggagccaatcctcacctaGagatgcgttttctgaacttg	10	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	59195263	59195263	G	C	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.1081	p.E361Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	68	0	0	46	16	25.81	-	-	-	C	59195263	G	C	59195263	3	2	240	1	0	0	0	0	1	0	0	0	3135	943	33	2	1103	2	CDH20	18	59195263	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2302322	59195263	18881985	3682	22532										
KIAA1468	0	genome.wustl.edu	37	chr18	59878437	59878437	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttagactttgcaagatattCagatgatggtaacagggaaa	10	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	59878437	59878437	C	G	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	nonsense	c.578	p.S193*	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	130	0	0	37	14	27.45	-	-	-	G	59878437	C	G	59878437	4	3	240	1	0	0	0	0	0	1	0	0	8288	838	29	2	584	2	KIAA1468	18	59878437	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	683174	59878437	18198811	3683	22533										
PHLPP1	0	genome.wustl.edu	37	chr18	60646418	60646418	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggaaaggagccacaatgtGatagaggtggctacagacgc	14	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	60646418	60646418	G	A	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	silent	c.4908	p.V1636	0.990	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	23	0	0	8	5	38.46	-	-	-	A	60646418	G	A	60646418	2	1	240	1	0	0	0	0	0	0	0	1	11928	1277	45	2		2	PHLPP1	18	60646418	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	767981	60646418	17430830	3684	22534										
SERPINB12	0	genome.wustl.edu	37	chr18	61234181	61234181	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgccaaccacccttttctCtttttcattagacacaacaa	2	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	61234181	61234181	C	G	SNP	SERPINB12	ENST00000269491	human	ensembl	69_37n	1	known	silent	c.1155	p.L385	0.998	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634	51	0	0	24	8	25	-	-	-	G	61234181	C	G	61234181	2	3	240	1	0	0	0	0	0	0	0	1	14187	900	32	2		2	SERPINB12	18	61234181	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	587763	61234181	16843067	3685	22535										
SERPINB4	0	genome.wustl.edu	37	chr18	61306949	61306949	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctttgaaatagattgcgttCacaagaaccagtgtcgtatc	8	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	61306949	61306949	C	G	SNP	SERPINB4	ENST00000413673	human	ensembl	69_37n	-1	novel	nonstop	c.536	p.*179S	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SERPINB4	HGNC	ENSG00000206073	193	0	0	70	37	34.58	-	-	-	G	61306949	C	G	61306949	4	3	240	1	0	0	0	0	0	0	0	0	14191	813	29	2	653	2	SERPINB4	18	61306949	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72768	61306949	16770299	3686	22536										
SERPINB11	0	genome.wustl.edu	37	chr18	61379843	61379843	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgagtttggtgtctaattCtctcaaatcaaccagccaga	7	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	61379843	61379843	C	T	SNP	SERPINB11	ENST00000382749	human	ensembl	69_37n	1	known	silent	c.273	p.F91	0.155	NULL	NULL	-	pseudogene	SERPINB11	HGNC	ENSG00000206072	112	0	0	45	29	39.19	-	-	-	T	61379843	C	T	61379843	2	4	240	1	0	0	0	0	0	0	0	1	14186	912	32	2		2	SERPINB11	18	61379843	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72894	61379843	16697405	3687	22537										
ADNP2	0	genome.wustl.edu	37	chr18	77896195	77896195	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgcttttagtcagtggtGaagtgatgcatgattccagt	11	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	18	77896195	77896195	G	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	nonsense	c.2899	p.E967*	0.608	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	47	0	0	24	12	33.33	-	-	-	T	77896195	G	T	77896195	4	4	240	1	0	0	0	0	0	1	0	0	324	1291	45	2	2909	2	ADNP2	18	77896195	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16516352	77896195	181053	3688	22538										
GZMM	0	genome.wustl.edu	37	chr19	549711	549711	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcagctccagggtctgcactGacatcttcaagcctcccgtg	9	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	549711	549711	G	T	SNP	GZMM	ENST00000264553	human	ensembl	69_37n	1	known	missense	c.694	p.D232Y	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMM	HGNC	ENSG00000197540	41	0	0	24	14	36.84	-	-	-	T	549711	G	T	549711	3	4	240	1	0	0	0	0	1	0	0	0	6970	1290	45	2	712	2	GZMM	19	549711	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		549711	58579272	3689	22539										
HCN2	0	genome.wustl.edu	37	chr19	603700	603700	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggacctggtgttgaacttCcgcaccggcattgtgatcga	12	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	603700	603700	C	T	SNP	HCN2	ENST00000251287	human	ensembl	69_37n	1	known	silent	c.789	p.F263	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	80	0	0	77	26	25.24	-	-	-	T	603700	C	T	603700	2	4	240	1	0	0	0	0	0	0	0	1	7048	854	30	2		2	HCN2	19	603700	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53989	603700	58525283	3690	22540										
POLRMT	0	genome.wustl.edu	37	chr19	618747	618747	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtaggtgatgctctgaattCcacctcctatttgctaaaaa	7	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	618747	618747	C	A	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.3326	p.G1109V	0.018	pfam_DNA-dir_Rpol_phage-type	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	36	0	0	33	9	21.43	-	-	-	A	618747	C	A	618747	3	1	240	1	0	0	0	0	1	0	0	0	12312	855	30	2	435	2	POLRMT	19	618747	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15047	618747	58510236	3691	22541										
PTBP1	0	genome.wustl.edu	37	chr19	810754	810754	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggaggcggtccaggccctCattgacctgcacaaccacga	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	810754	810754	C	A	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	silent	c.1602	p.L534	0.988	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	39	0	0	30	18	37.5	-	-	-	A	810754	C	A	810754	2	1	240	1	0	0	0	0	0	0	0	1	12805	813	29	2		2	PTBP1	19	810754	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	192007	810754	58318229	3692	22542										
LPPR3	0	genome.wustl.edu	37	chr19	814652	814652	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagggctccccacgggtcaGcaagagggcctgggaagggc	19	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	814652	814652	G	C	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	missense	c.697	p.L233V	0.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	30	0	0	28	6	17.65	-	-	-	C	814652	G	C	814652	3	2	240	1	0	0	0	0	1	0	0	0	8992	962	34	4	1551	4	LPPR3	19	814652	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3898	814652	58314331	3693	22543										
ARID3A	0	genome.wustl.edu	37	chr19	929830	929830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgggaggggacaccgggctCacccgggcgaggcagagaag	19	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	929830	929830	C	T	SNP	ARID3A	ENST00000263620	human	ensembl	69_37n	1	known	missense	c.302	p.S101L	0.020	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3A	HGNC	ENSG00000116017	22	0	0	11	5	31.25	-	-	-	T	929830	C	T	929830	3	4	240	1	0	0	0	0	1	0	0	0	918	838	29	2	304	2	ARID3A	19	929830	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	115178	929830	58199153	3694	22544										
ARID3A	0	genome.wustl.edu	37	chr19	964348	964348	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcggcctcgtggaggtcatCaacaagaagctgtggcgtga	16	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	964348	964348	C	G	SNP	ARID3A	ENST00000263620	human	ensembl	69_37n	1	known	missense	c.867	p.I289M	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3A	HGNC	ENSG00000116017	73	0	0	75	19	20.21	-	-	-	G	964348	C	G	964348	3	3	240	1	0	0	0	0	1	0	0	0	918	816	29	2	881	2	ARID3A	19	964348	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	34518	964348	58164635	3695	22545										
HMHA1	0	genome.wustl.edu	37	chr19	1083181	1083181	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaacaagatgacccccggGaacctgggcatcgtgttcgg	13	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	1083181	1083181	G	A	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	silent	c.2784	p.G928	0.995	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	12	0	0	10	7	41.18	-	-	-	A	1083181	G	A	1083181	2	1	240	1	0	0	0	0	0	0	0	1	7291	1161	41	2		2	HMHA1	19	1083181	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	118833	1083181	58045802	3696	22546										
DAZAP1	0	genome.wustl.edu	37	chr19	1421163	1421163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagcagaaaggacccaggaGcgataacagtaaatcaaata	9	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	1421163	1421163	G	A	SNP	DAZAP1	ENST00000233078	human	ensembl	69_37n	1	known	missense	c.320	p.S107N	0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626	68	0	0	56	16	22.22	-	-	-	A	1421163	G	A	1421163	3	1	240	1	0	0	0	0	1	0	0	0	4276	971	34	4	338	4	DAZAP1	19	1421163	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	337982	1421163	57707820	3697	22547										
PCSK4	0	genome.wustl.edu	37	chr19	1488079	1488079	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggatgctcaggtctggttGggcctcgctgttctgcaggg	16	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	1488079	1488079	G	A	SNP	PCSK4	ENST00000300954	human	ensembl	69_37n	-1	known	nonsense	c.400	p.Q134*	0.002	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257	17	0	0	18	7	28	-	-	-	A	1488079	G	A	1488079	4	1	240	1	0	0	0	0	0	1	0	0	11675	1357	47	4	1915	4	PCSK4	19	1488079	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	66916	1488079	57640904	3698	22548										
MBD3	0	genome.wustl.edu	37	chr19	1581238	1581238	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctggcgatggccgacagcAgcgtctcatccgtgcagcca	13	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	1581238	1581238	A	T	SNP	MBD3	ENST00000156825	human	ensembl	69_37n	-1	known	missense	c.530	p.L177Q	1.000	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655	35	0	0	15	9	37.5	-	-	-	T	1581238	A	T	1581238	3	4	240	1	0	0	0	0	1	0	0	0	9415	188	7	5	353	5	MBD3	19	1581238	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	93159	1581238	57547745	3699	22549										
LMNB2	0	genome.wustl.edu	37	chr19	2434313	2434313	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcctcctcgccctccagGagcttccggtaggcgttgat	10	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	2434313	2434313	G	C	SNP	LMNB2	ENST00000325327	human	ensembl	69_37n	-1	known	silent	c.1182	p.L394	0.876	pfam_F	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	32	0	0	29	5	14.71	-	-	-	C	2434313	G	C	2434313	2	2	240	1	0	0	0	0	0	0	0	1	8906	1161	41	2		2	LMNB2	19	2434313	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	853075	2434313	56694670	3700	22550										
THOP1	0	genome.wustl.edu	37	chr19	2799707	2799707	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacatcaaacgcatcaagaaGaagctgagccttctgtgcat	8	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	2799707	2799707	G	C	SNP	THOP1	ENST00000307741	human	ensembl	69_37n	1	known	missense	c.507	p.K169N	1.000	NULL	pfam_Pept_M3A_M3B	-	no_errors	THOP1	HGNC	ENSG00000172009	29	0	0	31	12	27.91	-	-	-	C	2799707	G	C	2799707	3	2	240	1	0	0	0	0	1	0	0	0	15966	933	33	2	525	2	THOP1	19	2799707	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	365394	2799707	56329276	3701	22551										
ZNF555	0	genome.wustl.edu	37	chr19	2852869	2852869	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaagctttcagttattcctCaacgtttcgaagacacacaa	6	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	2852869	2852869	C	G	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	1	known	nonsense	c.806	p.S269*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	58	0	0	42	19	31.15	-	-	-	G	2852869	C	G	2852869	4	3	240	1	0	0	0	0	0	1	0	0	18082	838	29	2	820	2	ZNF555	19	2852869	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53162	2852869	56276114	3702	22552										
ZNF77	0	genome.wustl.edu	37	chr19	2934275	2934275	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgttctgacatgttctcGaaagtatgagggacagctga	13	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	2934275	2934275	G	A	SNP	ZNF77	ENST00000314531	human	ensembl	69_37n	-1	known	nonsense	c.850	p.R284*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	104	0	0	108	38	26.03	-	-	-	A	2934275	G	A	2934275	4	1	240	1	0	0	0	0	0	1	0	0	18236	1066	37	1	791	1	ZNF77	19	2934275	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81406	2934275	56194708	3703	22553										
TLE2	0	genome.wustl.edu	37	chr19	2997923	2997923	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgttatttctggagatgtCacaactcaggactgaggacg	11	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	2997923	2997923	C	G	SNP	TLE2	ENST00000262953	human	ensembl	69_37n	-1	known	missense	c.2155	p.D719H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	84	0	0	76	19	20	-	-	-	G	2997923	C	G	2997923	3	3	240	1	0	0	0	0	1	0	0	0	16034	838	29	2	80	2	TLE2	19	2997923	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63648	2997923	56131060	3704	22554										
TLE2	0	genome.wustl.edu	37	chr19	3005795	3005795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagaagcaaaccttggcgtCggggctgacggccagggcgt	18	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3005795	3005795	C	T	SNP	TLE2	ENST00000262953	human	ensembl	69_37n	-1	known	missense	c.1672	p.D558N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	27	0	0	25	12	32.43	-	-	-	T	3005795	C	T	3005795	3	4	240	1	0	0	0	0	1	0	0	0	16034	884	31	1	579	1	TLE2	19	3005795	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	7872	3005795	56123188	3705	22555										
GNA11	0	genome.wustl.edu	37	chr19	3118977	3118977	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaagtggatccactgctttGagaacgtgacatccatcatg	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3118977	3118977	G	C	SNP	GNA11	ENST00000078429	human	ensembl	69_37n	1	known	missense	c.661	p.E221Q	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_GproteinA	-	no_errors	GNA11	HGNC	ENSG00000088256	92	0	0	73	21	22.34	-	-	-	C	3118977	G	C	3118977	3	2	240	1	0	0	0	0	1	0	0	0	6551	1291	45	2	679	2	GNA11	19	3118977	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	113182	3118977	56010006	3706	22556										
HMG20B	0	genome.wustl.edu	37	chr19	3575618	3575618	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcagtctgaagcctataaGatgtgcacggagaagatcca	11	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3575618	3575618	G	A	SNP	HMG20B	ENST00000333651	human	ensembl	69_37n	1	known	silent	c.432	p.K144	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20B	HGNC	ENSG00000064961	75	0	0	75	15	16.67	-	-	-	A	3575618	G	A	3575618	2	1	240	1	0	0	0	0	0	0	0	1	7273	933	33	2		2	HMG20B	19	3575618	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	456641	3575618	55553365	3707	22557										
PIP5K1C	0	genome.wustl.edu	37	chr19	3638912	3638912	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcggtggcgggcgcgtcctcCtcgtccgaggcctggctggc	17	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3638912	3638912	C	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	69_37n	-1	known	silent	c.1890	p.E630	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	29	0	0	14	9	39.13	-	-	-	T	3638912	C	T	3638912	2	4	240	1	0	0	0	0	0	0	0	1	12015	680	24	4		4	PIP5K1C	19	3638912	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63294	3638912	55490071	3708	22558										
ZFR2	0	genome.wustl.edu	37	chr19	3813855	3813855	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcccgcatcagaggtgaGgtgacagatatggtgacctg	13	10	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3813855	3813855	G	C	SNP	ZFR2	ENST00000262961	human	ensembl	69_37n	-1	known	silent	c.2205	p.T735	1.000	pfam_DZF,smart_DZF	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278	54	0	0	38	18	32.14	-	-	-	C	3813855	G	C	3813855	2	2	240	1	0	0	0	0	0	0	0	1	17756	987	35	4		4	ZFR2	19	3813855	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	174943	3813855	55315128	3709	22559										
EEF2	0	genome.wustl.edu	37	chr19	3977868	3977868	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactgtccttgatctcgttGaggtactgcacacccttggt	9	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	3977868	3977868	G	C	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	silent	c.2016	p.L672	0.992	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	40	0	0	21	11	34.38	-	-	-	C	3977868	G	C	3977868	2	2	240	1	0	0	0	0	0	0	0	1	4964	1277	45	2		2	EEF2	19	3977868	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	164013	3977868	55151115	3710	22560										
ZBTB7A	0	genome.wustl.edu	37	chr19	4054874	4054874	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtcggcgcacacgtggctCacggcggggatctccagcag	16	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4054874	4054874	C	T	SNP	ZBTB7A	ENST00000322357	human	ensembl	69_37n	-1	known	silent	c.357	p.V119	0.999	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951	22	0	0	7	5	41.67	-	-	-	T	4054874	C	T	4054874	2	4	240	1	0	0	0	0	0	0	0	1	17649	813	29	2		2	ZBTB7A	19	4054874	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	77006	4054874	55074109	3711	22561										
MAP2K2	0	genome.wustl.edu	37	chr19	4117570	4117570	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcttccagccgcttcttCtgctgctcgtcaagttccag	9	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4117570	4117570	C	G	SNP	MAP2K2	ENST00000262948	human	ensembl	69_37n	-1	known	missense	c.150	p.Q50H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934	77	0	0	60	15	20	-	-	-	G	4117570	C	G	4117570	3	3	240	1	0	0	0	0	1	0	0	0	9308	912	32	2	1092	2	MAP2K2	19	4117570	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	62696	4117570	55011413	3712	22562										
ANKRD24	0	genome.wustl.edu	37	chr19	4200135	4200135	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctggaggtgatgatagctCatggcagcaatgtcatgagc	14	7	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4200135	4200135	C	T	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	1	known	missense	c.580	p.H194Y	0.989	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	24	0	0	26	12	31.58	-	-	-	T	4200135	C	T	4200135	3	4	240	1	0	0	0	0	1	0	0	0	653	826	29	2	324	2	ANKRD24	19	4200135	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	82565	4200135	54928848	3713	22563										
PLIN5	0	genome.wustl.edu	37	chr19	4525716	4525716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctctgcctcagtttccccaCagagtgctcgtaggccaggt	11	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4525716	4525716	C	T	SNP	PLIN5	ENST00000381848	human	ensembl	69_37n	-1	known	missense	c.649	p.V217M	0.911	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN5	HGNC	ENSG00000214456	44	0	0	27	13	32.5	-	-	-	T	4525716	C	T	4525716	3	4	240	1	0	0	0	0	1	0	0	0	12167	478	17	4	754	4	PLIN5	19	4525716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	325581	4525716	54603267	3714	22564										
LRG1	0	genome.wustl.edu	37	chr19	4538710	4538710	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attgctggagaggtgcaattCttggagcttagaggcgccct	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4538710	4538710	C	T	SNP	LRG1	ENST00000306390	human	ensembl	69_37n	-1	known	missense	c.286	p.E96K	0.370	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	50	0	0	34	9	20.93	-	-	-	T	4538710	C	T	4538710	3	4	240	1	0	0	0	0	1	0	0	0	9008	922	32	2	761	2	LRG1	19	4538710	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12994	4538710	54590273	3715	22565										
TNFAIP8L1	0	genome.wustl.edu	37	chr19	4652151	4652151	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcgctgctgcggcgcttCcgccaccgggcgcgctgcct	15	18	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4652151	4652151	C	T	SNP	TNFAIP8L1	ENST00000327473	human	ensembl	69_37n	1	known	silent	c.270	p.F90	0.993	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8L1	HGNC	ENSG00000185361	20	0	0	11	4	26.67	-	-	-	T	4652151	C	T	4652151	2	4	240	1	0	0	0	0	0	0	0	1	16372	854	30	2		2	TNFAIP8L1	19	4652151	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	113441	4652151	54476832	3716	22566										
DPP9	0	genome.wustl.edu	37	chr19	4689735	4689735	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctcctcattgacccagatCtgcagggggacaggggatcc	13	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4689735	4689735	C	T	SNP	DPP9	ENST00000262960	human	ensembl	69_37n	-1	known	splice_site	c.1597-1	e13-1	1.000	-	-	-	no_errors	DPP9	HGNC	ENSG00000142002	31	0	0	45	7	13.46	-	-	-	T	4689735	C	T	4689735	5	4	240	1	0	0	0	0	0	0	1	0	4768	927	32	2	1114	2	DPP9	19	4689735	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	37584	4689735	54439248	3717	22567										
UHRF1	0	genome.wustl.edu	37	chr19	4947193	4947193	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagaggaccgcggaacagtCttgtgatcagaaactcacca	10	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4947193	4947193	C	G	SNP	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	84	0	0	72	17	19.1	-	-	-	G	4947193	C	G	4947193	1	3	240	0	1	0	0	0	0	0	0	0	17064	913	32	2		2	UHRF1	19	4947193	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	257458	4947193	54181790	3718	22568										
UHRF1	0	genome.wustl.edu	37	chr19	4956731	4956731	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccctctagttccagttgttCctgagtaaagtggaggagac	11	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	4956731	4956731	C	A	SNP	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	83	0	0	67	34	33.66	-	-	-	A	4956731	C	A	4956731	1	1	240	0	1	0	0	0	0	0	0	0	17064	854	30	2		2	UHRF1	19	4956731	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9538	4956731	54172252	3719	22569										
PTPRS	0	genome.wustl.edu	37	chr19	5221138	5221138	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggcggtgaccgtctgctGgaggccgcccaggctgctgc	16	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	5221138	5221138	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	69_37n	-1	known	nonsense	c.3331	p.Q1111*	0.979	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like	-	no_errors	PTPRS	HGNC	ENSG00000105426	74	0	0	59	19	24.36	-	-	-	A	5221138	G	A	5221138	4	1	240	1	0	0	0	0	0	1	0	0	12894	1357	47	4	2594	4	PTPRS	19	5221138	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	264407	5221138	53907845	3720	22570										
LONP1	0	genome.wustl.edu	37	chr19	5692072	5692072	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacggccagcgcctctgcctGctcgtccgggaaggcgatgt	14	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	5692072	5692072	G	A	SNP	LONP1	ENST00000360614	human	ensembl	69_37n	-1	known	nonsense	c.2851	p.Q951*	0.000	superfamily_Ribosomal_S5_D2-typ_fold	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP1	HGNC	ENSG00000196365	25	0	0	23	12	34.29	-	-	-	A	5692072	G	A	5692072	4	1	240	1	0	0	0	0	0	1	0	0	8958	1328	46	4	32	4	LONP1	19	5692072	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	470934	5692072	53436911	3721	22571										
CAPS	0	genome.wustl.edu	37	chr19	5914691	5914691	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggcagagggtgtgtgcagGaagtgggaccgcaatggcag	20	6	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	5914691	5914691	G	A	SNP	CAPS	ENST00000222125	human	ensembl	69_37n	1	known	silent	c.201	p.R67	0.994	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS	HGNC	ENSG00000105519	41	0	0	39	32	45.07	-	-	-	A	5914691	G	A	5914691	2	1	240	1	0	0	0	0	0	0	0	1	2662	1165	41	2		2	CAPS	19	5914691	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	222619	5914691	53214292	3722	22572										
RFX2	0	genome.wustl.edu	37	chr19	6004218	6004218	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccccggacgcaccttggtCtggatgacctgttgtgggaa	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	6004218	6004218	C	G	SNP	RFX2	ENST00000303657	human	ensembl	69_37n	-1	known	missense	c.1494	p.Q498H	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903	77	0	0	51	17	25	-	-	-	G	6004218	C	G	6004218	3	3	240	1	0	0	0	0	1	0	0	0	13346	912	32	2	701	2	RFX2	19	6004218	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	89527	6004218	53124765	3723	22573										
CD70	0	genome.wustl.edu	37	chr19	6586069	6586069	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactccaaagaaggtctcatCagtgtttcgggaaggcaaaa	10	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	6586069	6586069	C	T	SNP	CD70	ENST00000245903	human	ensembl	69_37n	-1	known	missense	c.544	p.D182N	0.829	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	CD70	HGNC	ENSG00000125726	61	0	0	65	20	23.53	-	-	-	T	6586069	C	T	6586069	3	4	240	1	0	0	0	0	1	0	0	0	3062	826	29	2	41	2	CD70	19	6586069	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	581851	6586069	52542914	3724	22574										
C3	0	genome.wustl.edu	37	chr19	6686142	6686142	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggcccacttgcctgggtaGagccatagccaccaccgtag	12	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	6686142	6686142	G	C	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.3803	p.S1268C	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	75	0	0	65	16	19.75	-	-	-	C	6686142	G	C	6686142	3	2	240	1	0	0	0	0	1	0	0	0	2224	942	33	2	1240	2	C3	19	6686142	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	100073	6686142	52442841	3725	22575										
C3	0	genome.wustl.edu	37	chr19	6711101	6711101	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagctctgtacgtagcactGagagatgcaggtaattgttg	13	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	6711101	6711101	G	A	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.1376	p.S459L	0.125	pfam_A2M_N_2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	118	0	0	101	27	21.09	-	-	-	A	6711101	G	A	6711101	3	1	240	1	0	0	0	0	1	0	0	0	2224	1294	45	2	3735	2	C3	19	6711101	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24959	6711101	52417882	3726	22576										
SH2D3A	0	genome.wustl.edu	37	chr19	6754078	6754078	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaccagcgccctcatccaGagcccgcatcagcggcttca	8	18	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	6754078	6754078	G	C	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	missense	c.1369	p.L457V	0.946	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	27	0	0	27	11	28.95	-	-	-	C	6754078	G	C	6754078	3	2	240	1	0	0	0	0	1	0	0	0	14321	933	33	2	373	2	SH2D3A	19	6754078	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42977	6754078	52374905	3727	22577										
INSR	0	genome.wustl.edu	37	chr19	7120638	7120638	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacacaactcaccacatgtCagaagaagtggtgaagaccc	8	12	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	7120638	7120638	C	G	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.3652	p.D1218H	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	52	0	0	42	15	26.32	-	-	-	G	7120638	C	G	7120638	3	3	240	1	0	0	0	0	1	0	0	0	7827	826	29	2	508	2	INSR	19	7120638	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	366560	7120638	52008345	3728	22578										
INSR	0	genome.wustl.edu	37	chr19	7120734	7120734	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttccggtagtaatccgtttCatagatgtctctggtcattc	8	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	7120734	7120734	C	G	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.3556	p.E1186Q	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	48	0	0	46	8	14.81	-	-	-	G	7120734	C	G	7120734	3	3	240	1	0	0	0	0	1	0	0	0	7827	835	29	2	604	2	INSR	19	7120734	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96	7120734	52008249	3729	22579										
PNPLA6	0	genome.wustl.edu	37	chr19	7625554	7625554	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgtgggctaccagtacggGaaggcggtgtttggaggctg	19	6	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	7625554	7625554	G	A	SNP	PNPLA6	ENST00000414982	human	ensembl	69_37n	1	known	silent	c.3750	p.G1250	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	44	0	0	19	7	26.92	-	-	-	A	7625554	G	A	7625554	2	1	240	1	0	0	0	0	0	0	0	1	12243	1161	41	2		2	PNPLA6	19	7625554	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	504820	7625554	51503429	3730	22580										
EVI5L	0	genome.wustl.edu	37	chr19	7913975	7913975	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccgcacctacccggaacatGagttcttcaagggccaggac	10	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	7913975	7913975	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	69_37n	1	known	missense	c.496	p.E166K	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459	25	0	0	22	9	29.03	-	-	-	A	7913975	G	A	7913975	3	1	240	1	0	0	0	0	1	0	0	0	5327	1291	45	2	506	2	EVI5L	19	7913975	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	288421	7913975	51215008	3731	22581										
ELAVL1	0	genome.wustl.edu	37	chr19	8046016	8046016	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgttcagcgtgttgatcgctCtctctgcatccttcgcggtc	10	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	8046016	8046016	C	G	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	missense	c.308	p.R103T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	87	0	0	85	38	30.89	-	-	-	G	8046016	C	G	8046016	3	3	240	1	0	0	0	0	1	0	0	0	5086	913	32	2	769	2	ELAVL1	19	8046016	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	132041	8046016	51082967	3732	22582										
HNRNPM	0	genome.wustl.edu	37	chr19	8550499	8550499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttcaggtggaggtggagGaagcgtccctgggatcgaga	18	6	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	8550499	8550499	G	A	SNP	HNRNPM	ENST00000325495	human	ensembl	69_37n	1	known	missense	c.1187	p.G396E	1.000	NULL	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783	42	0	0	19	10	34.48	-	-	-	A	8550499	G	A	8550499	3	1	240	1	0	0	0	0	1	0	0	0	7322	1174	41	2	1241	2	HNRNPM	19	8550499	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	504483	8550499	50578484	3733	22583										
MYO1F	0	genome.wustl.edu	37	chr19	8615498	8615498	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttcacagaaactgatgttCcccaggtgcaagatccccgc	8	14	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	8615498	8615498	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	silent	c.852	p.G284	0.968	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	55	0	0	58	11	15.94	-	-	-	T	8615498	C	T	8615498	2	4	240	1	0	0	0	0	0	0	0	1	10145	842	30	2		2	MYO1F	19	8615498	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64999	8615498	50513485	3734	22584										
ADAMTS10	0	genome.wustl.edu	37	chr19	8660696	8660696	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctgaaagcggcattgctCatctgcatcgtaggcttggc	12	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	8660696	8660696	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	69_37n	-1	known	missense	c.1429	p.E477K	1.000	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303	60	0	0	47	10	17.54	-	-	-	T	8660696	C	T	8660696	3	4	240	1	0	0	0	0	1	0	0	0	256	835	29	2	1942	2	ADAMTS10	19	8660696	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	45198	8660696	50468287	3735	22585										
MUC16	0	genome.wustl.edu	37	chr19	9002175	9002175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtggtcgtcatagagctCtgatgggtgaaacctgcatt	13	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9002175	9002175	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.40329	p.Q13443H	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	117	0	0	71	17	19.32	-	-	-	G	9002175	C	G	9002175	3	3	240	1	0	0	0	0	1	0	0	0	10045	912	32	2	3326	2	MUC16	19	9002175	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	341479	9002175	50126808	3736	22586										
MUC16	0	genome.wustl.edu	37	chr19	9046459	9046459	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagctgaactggcttctgtCctaggactggtggccattac	11	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9046459	9046459	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.35172	p.R11724S	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	94	0	0	80	36	31.03	-	-	-	G	9046459	C	G	9046459	3	3	240	1	0	0	0	0	1	0	0	0	10045	854	30	2	8671	2	MUC16	19	9046459	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44284	9046459	50082524	3737	22587										
MUC16	0	genome.wustl.edu	37	chr19	9049754	9049754	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgactggtggctgtggaaGatacagtgtctaattcactg	12	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9049754	9049754	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.31877	p.S10626C	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	140	0	0	97	32	24.81	-	-	-	C	9049754	G	C	9049754	3	2	240	1	0	0	0	0	1	0	0	0	10045	942	33	2	11966	2	MUC16	19	9049754	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3295	9049754	50079229	3738	22588										
MUC16	0	genome.wustl.edu	37	chr19	9062050	9062050	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctggtgatatggtgaactGatcaggccctgacatggatg	14	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9062050	9062050	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	nonsense	c.25396	p.Q8466*	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	46	0	0	32	12	27.27	-	-	-	A	9062050	G	A	9062050	4	1	240	1	0	0	0	0	0	1	0	0	10045	1299	45	2	18455	2	MUC16	19	9062050	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12296	9062050	50066933	3739	22589										
MUC16	0	genome.wustl.edu	37	chr19	9066056	9066056	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgttaccgggctagaggtGagaagtgaagtcacaggaag	16	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9066056	9066056	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.21390	p.L7130	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	272	0	0	264	81	23.48	-	-	-	A	9066056	G	A	9066056	2	1	240	1	0	0	0	0	0	0	0	1	10045	1277	45	2		2	MUC16	19	9066056	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4006	9066056	50062927	3740	22590										
MUC16	0	genome.wustl.edu	37	chr19	9087697	9087697	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggactggtgagattgggtGaacttgagattttaggactt	14	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9087697	9087697	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4118	p.S1373L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	270	0	0	180	72	28.57	-	-	-	A	9087697	G	A	9087697	3	1	240	1	0	0	0	0	1	0	0	0	10045	1294	45	2	39741	2	MUC16	19	9087697	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21641	9087697	50041286	3741	22591										
ZNF317	0	genome.wustl.edu	37	chr19	9270894	9270894	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgggaaggcacgctggcaaGaggccctatcaccgccgcga	14	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9270894	9270894	G	A	SNP	ZNF317	ENST00000247956	human	ensembl	69_37n	1	known	silent	c.573	p.K191	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	44	0	0	27	10	27.03	-	-	-	A	9270894	G	A	9270894	2	1	240	1	0	0	0	0	0	0	0	1	17931	933	33	2		2	ZNF317	19	9270894	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	183197	9270894	49858089	3742	22592										
OLFM2	0	genome.wustl.edu	37	chr19	9971362	9971362	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccgactcctgccatctcGagagcaggtactctgcgctg	10	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	9971362	9971362	G	C	SNP	OLFM2	ENST00000264833	human	ensembl	69_37n	-1	known	missense	c.172	p.R58G	1.000	pfam_Noelin-1	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088	39	0	0	34	14	29.17	-	-	-	C	9971362	G	C	9971362	3	2	240	1	0	0	0	0	1	0	0	0	10926	1066	37	3	1212	3	OLFM2	19	9971362	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	700468	9971362	49157621	3743	22593										
ICAM4	0	genome.wustl.edu	37	chr19	10397803	10397803	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagccccaagggtagccctCtcgcgccctccgggacctca	10	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10397803	10397803	C	T	SNP	ICAM4	ENST00000340992	human	ensembl	69_37n	1	known	missense	c.115	p.L39F	0.001	NULL	pfam_ICAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371	15	0	0	6	5	45.45	-	-	-	T	10397803	C	T	10397803	3	4	240	1	0	0	0	0	1	0	0	0	7536	913	32	2	117	2	ICAM4	19	10397803	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	426441	10397803	48731180	3744	22594										
ICAM5	0	genome.wustl.edu	37	chr19	10401896	10401896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcgccgaaacgggacccaGaggggtttgcgttggttggc	17	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10401896	10401896	G	C	SNP	ICAM5	ENST00000221980	human	ensembl	69_37n	1	known	missense	c.231	p.Q77H	1.000	pfam_ICAM_N	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376	21	0	0	6	9	60	-	-	-	C	10401896	G	C	10401896	3	2	240	1	0	0	0	0	1	0	0	0	7537	933	33	2	237	2	ICAM5	19	10401896	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4093	10401896	48727087	3745	22595										
TYK2	0	genome.wustl.edu	37	chr19	10463645	10463645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcgcgcacgcggtagtactCgtggccttcgggcacggcct	14	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10463645	10463645	C	T	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	missense	c.3157	p.E1053K	0.991	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	30	0	0	29	10	25.64	-	-	-	T	10463645	C	T	10463645	3	4	240	1	0	0	0	0	1	0	0	0	16907	893	31	1	422	1	TYK2	19	10463645	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	61749	10463645	48665338	3746	22596										
TYK2	0	genome.wustl.edu	37	chr19	10468728	10468728	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggatcactcagcttgatGaaggggctggtgccctctgc	13	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10468728	10468728	G	A	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	silent	c.2262	p.F754	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	24	0	0	23	6	20.69	-	-	-	A	10468728	G	A	10468728	2	1	240	1	0	0	0	0	0	0	0	1	16907	1281	45	2		2	TYK2	19	10468728	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5083	10468728	48660255	3747	22597										
CDC37	0	genome.wustl.edu	37	chr19	10505732	10505732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactgccggaagcaggcccGggggtccacctttaggctct	14	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10505732	10505732	G	A	SNP	CDC37	ENST00000222005	human	ensembl	69_37n	-1	known	missense	c.691	p.R231W	1.000	pfam_Cdc37_Hsp90-bd	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401	56	0	0	44	11	20	-	-	-	A	10505732	G	A	10505732	3	1	240	1	0	0	0	0	1	0	0	0	3097	1115	39	1	461	1	CDC37	19	10505732	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37004	10505732	48623251	3748	22598										
AP1M2	0	genome.wustl.edu	37	chr19	10692015	10692015	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attcctgacagaaacaccttGagcttgatggtaccgacgat	9	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10692015	10692015	G	C	SNP	AP1M2	ENST00000590923	human	ensembl	69_37n	-1	known	silent	c.600	p.L200	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M2	HGNC	ENSG00000129354	41	0	0	22	25	53.19	-	-	-	C	10692015	G	C	10692015	2	2	240	1	0	0	0	0	0	0	0	1	736	1277	45	2		2	AP1M2	19	10692015	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	186283	10692015	48436968	3749	22599										
DNM2	0	genome.wustl.edu	37	chr19	10922975	10922975	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctgaccatcaacaacatCagcctgatgaaaggcggctc	10	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	10922975	10922975	C	T	SNP	DNM2	ENST00000588392	human	ensembl	69_37n	1	novel	nonsense	c.418	p.Q140*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Dynamin_central,pfam_GED,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNM2	HGNC	ENSG00000079805	64	0	0	63	14	17.95	-	-	-	T	10922975	C	T	10922975	4	4	240	1	0	0	0	0	0	1	0	0	4707	816	29	2	1794	2	DNM2	19	10922975	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	230960	10922975	48206008	3750	22600										
DOCK6	0	genome.wustl.edu	37	chr19	11361612	11361612	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgctgccgtcgaagggtttCattgcgccggtccacatctt	12	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	11361612	11361612	C	T	SNP	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	missense	c.658	p.E220K	0.985	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	33	0	0	19	7	26.92	-	-	-	T	11361612	C	T	11361612	3	4	240	1	0	0	0	0	1	0	0	0	4726	835	29	2	5657	2	DOCK6	19	11361612	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	438637	11361612	47767371	3751	22601										
DOCK6	0	genome.wustl.edu	37	chr19	11364389	11364389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggacacctgcttccgcacctCtgcggccaccgtcctggaaa	10	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	11364389	11364389	C	G	SNP	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	missense	c.58	p.E20Q	0.998	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	13	0	0	5	6	54.55	-	-	-	G	11364389	C	G	11364389	3	3	240	1	0	0	0	0	1	0	0	0	4726	922	32	2	6273	2	DOCK6	19	11364389	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2777	11364389	47764594	3752	22602										
CNN1	0	genome.wustl.edu	37	chr19	11658677	11658677	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaagcaggagcggaaattCgagccggggaagctaagaga	17	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	11658677	11658677	C	T	SNP	CNN1	ENST00000586577	human	ensembl	69_37n	1	putative	nonsense	c.238	p.R80*	1.000	superfamily_CH-domain,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNN1	HGNC	ENSG00000130176	53	0	0	50	23	31.51	-	-	-	T	11658677	C	T	11658677	4	4	240	1	0	0	0	0	0	1	0	0	3639	883	31	1	474	1	CNN1	19	11658677	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	294288	11658677	47470306	3753	22603										
CNN1	0	genome.wustl.edu	37	chr19	11660373	11660373	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacccttcgcaggctggcatGactgcgccagggaccaagcg	13	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	11660373	11660373	G	A	SNP	CNN1	ENST00000252456	human	ensembl	69_37n	1	known	missense	c.657	p.M219I	1.000	pfam_Calponin_repeat,pfscan_Calponin_repeat	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176	18	0	0	10	7	41.18	-	-	-	A	11660373	G	A	11660373	3	1	240	1	0	0	0	0	1	0	0	0	3639	1290	45	2	683	2	CNN1	19	11660373	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1696	11660373	47468610	3754	22604										
ZNF823	0	genome.wustl.edu	37	chr19	11833998	11833998	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtgtccagtgtcaactctGatgttgcaattaagagacga	10	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	11833998	11833998	G	C	SNP	ZNF823	ENST00000341191	human	ensembl	69_37n	-1	known	missense	c.351	p.I117M	0.012	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933	213	0	0	144	41	22.16	-	-	-	C	11833998	G	C	11833998	3	2	240	1	0	0	0	0	1	0	0	0	18272	1280	45	2	1485	2	ZNF823	19	11833998	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	173625	11833998	47294985	3755	22605										
ZNF20	0	genome.wustl.edu	37	chr19	12246603	12246603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctacagaggtcaggttcttGaaggtttcctgcatcacatc	9	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12246603	12246603	G	C	SNP	ZNF20	ENST00000334213	human	ensembl	69_37n	-1	known	missense	c.120	p.F40L	0.595	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	225	0	0	136	26	16.05	-	-	-	C	12246603	G	C	12246603	3	2	240	1	0	0	0	0	1	0	0	0	17857	1281	45	2	1490	2	ZNF20	19	12246603	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	412605	12246603	46882380	3756	22606										
ZNF625	0	genome.wustl.edu	37	chr19	12256295	12256295	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaaggtgcgaggcagatctGaaggctttcccacattgctt	12	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12256295	12256295	G	A	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	silent	c.936	p.F312	0.911	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	103	0	0	78	32	29.09	-	-	-	A	12256295	G	A	12256295	2	1	240	1	0	0	0	0	0	0	0	1	18145	1281	45	2		2	ZNF625	19	12256295	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	9692	12256295	46872688	3757	22607										
ZNF136	0	genome.wustl.edu	37	chr19	12296618	12296618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggactcggtggcttttgagGatgtagatgtgaacttcacc	13	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12296618	12296618	G	A	SNP	ZNF136	ENST00000343979	human	ensembl	69_37n	1	known	missense	c.22	p.D8N	0.507	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF136	HGNC	ENSG00000196646	115	0	0	81	33	28.95	-	-	-	A	12296618	G	A	12296618	3	1	240	1	0	0	0	0	1	0	0	0	17822	1174	41	2	28	2	ZNF136	19	12296618	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40323	12296618	46832365	3758	22608										
ZNF563	0	genome.wustl.edu	37	chr19	12432120	12432120	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggatttttgtactgatcttCagtattctgttcttcccata	6	8	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12432120	12432120	C	T	SNP	ZNF563	ENST00000293725	human	ensembl	69_37n	-1	known	missense	c.157	p.E53K	0.230	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868	167	0	0	113	30	20.98	-	-	-	T	12432120	C	T	12432120	3	4	240	1	0	0	0	0	1	0	0	0	18090	835	29	2	1281	2	ZNF563	19	12432120	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	135502	12432120	46696863	3759	22609										
ZNF799	0	genome.wustl.edu	37	chr19	12502802	12502802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgcgtatctggcttctctCcacattcatgatactcatat	5	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12502802	12502802	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	missense	c.410	p.G137E	0.046	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	279	0	0	181	59	24.58	-	-	-	T	12502802	C	T	12502802	3	4	240	1	0	0	0	0	1	0	0	0	18259	855	30	2	1525	2	ZNF799	19	12502802	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70682	12502802	46626181	3760	22610										
ZNF564	0	genome.wustl.edu	37	chr19	12637884	12637884	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaacattactggaagaactGaaggttttaccacatttatt	7	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12637884	12637884	G	T	SNP	ZNF564	ENST00000339282	human	ensembl	69_37n	-1	known	missense	c.1038	p.F346L	0.968	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	65	0	0	33	34	50.75	-	-	-	T	12637884	G	T	12637884	3	4	240	1	0	0	0	0	1	0	0	0	18091	1281	45	2	627	2	ZNF564	19	12637884	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	135082	12637884	46491099	3761	22611										
ZNF564	0	genome.wustl.edu	37	chr19	12639152	12639152	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatttttgtaccaatcttCaatgctctggtcttcccatt	5	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12639152	12639152	C	A	SNP	ZNF564	ENST00000339282	human	ensembl	69_37n	-1	known	nonsense	c.157	p.E53*	0.228	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	146	0	0	86	20	18.87	-	-	-	A	12639152	C	A	12639152	4	1	240	1	0	0	0	0	0	1	0	0	18091	835	29	2	1512	2	ZNF564	19	12639152	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1268	12639152	46489831	3762	22612										
ZNF791	0	genome.wustl.edu	37	chr19	12739748	12739748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acactggagagaaaccctatGaatgtaaacaatgtggaaaa	9	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12739748	12739748	G	C	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.1405	p.E469Q	0.110	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	59	0	0	43	14	24.56	-	-	-	C	12739748	G	C	12739748	3	2	240	1	0	0	0	0	1	0	0	0	18256	1291	45	2	1419	2	ZNF791	19	12739748	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	100596	12739748	46389235	3763	22613										
ZNF791	0	genome.wustl.edu	37	chr19	12739988	12739988	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atacaagaattcacaattatGagaaacctcttgaatgtaag	6	6	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12739988	12739988	G	A	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.1645	p.E549K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	62	0	0	40	18	31.03	-	-	-	A	12739988	G	A	12739988	3	1	240	1	0	0	0	0	1	0	0	0	18256	1291	45	2	1659	2	ZNF791	19	12739988	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	240	12739988	46388995	3764	22614										
DHPS	0	genome.wustl.edu	37	chr19	12791093	12791093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcggctctgggtcaggtccGcgtgctggtcttcatcctgt	15	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12791093	12791093	G	A	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	missense	c.254	p.A85V	0.002	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	127	0	0	103	34	24.82	-	-	-	A	12791093	G	A	12791093	3	1	240	1	0	0	0	0	1	0	0	0	4521	1087	38	1	887	1	DHPS	19	12791093	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51105	12791093	46337890	3765	22615										
TNPO2	0	genome.wustl.edu	37	chr19	12814323	12814323	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggttcaggttggtgcccaGaatgggcatgaactcggctg	16	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12814323	12814323	G	A	SNP	TNPO2	ENST00000425528	human	ensembl	69_37n	-1	known	silent	c.2128	p.L710	0.999	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576	85	0	0	90	43	32.33	-	-	-	A	12814323	G	A	12814323	2	1	240	1	0	0	0	0	0	0	0	1	16431	933	33	2		2	TNPO2	19	12814323	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23230	12814323	46314660	3766	22616										
TNPO2	0	genome.wustl.edu	37	chr19	12817064	12817064	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggtgccaatggcgtcataGaggatgagcaggttcttgtg	16	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12817064	12817064	G	C	SNP	TNPO2	ENST00000588491	human	ensembl	69_37n	-1	known	missense	c.223	p.L75V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNPO2	HGNC	ENSG00000105576	53	0	0	34	11	24.44	-	-	-	C	12817064	G	C	12817064	3	2	240	1	0	0	0	0	1	0	0	0	16431	929	33	2	1123	2	TNPO2	19	12817064	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2741	12817064	46311919	3767	22617										
RNASEH2A	0	genome.wustl.edu	37	chr19	12923949	12923949	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggagcctgtgttcggcttCccccagtttgtccggttcag	13	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12923949	12923949	C	A	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	1	known	missense	c.690	p.F230L	0.997	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	95	0	0	60	13	17.81	-	-	-	A	12923949	C	A	12923949	3	1	240	1	0	0	0	0	1	0	0	0	13498	854	30	2	716	2	RNASEH2A	19	12923949	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	106885	12923949	46205034	3768	22618										
RNASEH2A	0	genome.wustl.edu	37	chr19	12924231	12924231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagcccgtccccgttcttCccaccgatatttcctggaac	6	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12924231	12924231	C	T	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	1	known	missense	c.851	p.S284F	0.956	NULL	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	58	0	0	33	12	26.67	-	-	-	T	12924231	C	T	12924231	3	4	240	1	0	0	0	0	1	0	0	0	13498	855	30	2	881	2	RNASEH2A	19	12924231	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	282	12924231	46204752	3769	22619										
MAST1	0	genome.wustl.edu	37	chr19	12975948	12975948	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctcaccaccaacttatatGaaggccacatcgagaaggac	8	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12975948	12975948	G	T	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	nonsense	c.1594	p.E532*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	55	0	0	65	17	20.73	-	-	-	T	12975948	G	T	12975948	4	4	240	1	0	0	0	0	0	1	0	0	9395	1291	45	2	1648	2	MAST1	19	12975948	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51717	12975948	46153035	3770	22620										
MAST1	0	genome.wustl.edu	37	chr19	12976805	12976805	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtcccaggcggcgcttttGaggtgaagcagcacagtttc	13	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	12976805	12976805	G	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.1918	p.E640K	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	69	0	0	39	14	25.93	-	-	-	A	12976805	G	A	12976805	3	1	240	1	0	0	0	0	1	0	0	0	9395	1291	45	2	1984	2	MAST1	19	12976805	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	857	12976805	46152178	3771	22621										
FARSA	0	genome.wustl.edu	37	chr19	13041506	13041506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgccctcccgggcaatctCctcgccctccgcagtaagct	9	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	13041506	13041506	C	T	SNP	FARSA	ENST00000314606	human	ensembl	69_37n	-1	known	missense	c.205	p.E69K	1.000	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	-	no_errors	FARSA	HGNC	ENSG00000179115	26	0	0	22	11	33.33	-	-	-	T	13041506	C	T	13041506	3	4	240	1	0	0	0	0	1	0	0	0	5725	864	30	2	1369	2	FARSA	19	13041506	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64701	13041506	46087477	3772	22622										
MRI1	0	genome.wustl.edu	37	chr19	13883024	13883024	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgggggtctttgcccctGaggagctccggacagcccta	13	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	13883024	13883024	G	A	SNP	MRI1	ENST00000040663	human	ensembl	69_37n	1	known	missense	c.1039	p.E347K	0.109	NULL	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	-	no_errors	MRI1	HGNC	ENSG00000037757	65	0	0	48	25	34.25	-	-	-	A	13883024	G	A	13883024	3	1	240	1	0	0	0	0	1	0	0	0	9842	1291	45	2	1154	2	MRI1	19	13883024	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	841518	13883024	45245959	3773	22623										
C19orf57	0	genome.wustl.edu	37	chr19	14006307	14006307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactctgggggtccccataGaagtctcctagccttgggtt	12	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	14006307	14006307	G	A	SNP	C19orf57	ENST00000454313	human	ensembl	69_37n	-1	known	silent	c.84	p.F28	0.000	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016	89	0	0	79	31	28.18	-	-	-	A	14006307	G	A	14006307	2	1	240	1	0	0	0	0	0	0	0	1	1957	933	33	2		2	C19orf57	19	14006307	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	123283	14006307	45122676	3774	22624										
EMR3	0	genome.wustl.edu	37	chr19	14758073	14758073	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatagcagcactcacaacctGagagttcagatacacttgat	7	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	14758073	14758073	G	C	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.802	p.Q268E	0.367	prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	97	0	0	47	44	48.35	-	-	-	C	14758073	G	C	14758073	3	2	240	1	0	0	0	0	1	0	0	0	5143	1299	45	2	1192	2	EMR3	19	14758073	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	751766	14758073	44370910	3775	22625										
OR7A10	0	genome.wustl.edu	37	chr19	14952650	14952650	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctctgaaattcccaggaGaagaaattctaaaattattg	6	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	14952650	14952650	G	C	SNP	OR7A10	ENST00000248058	human	ensembl	69_37n	-1	known	missense	c.40	p.L14V	0.030	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A10	HGNC	ENSG00000127515	34	0	0	32	6	15.79	-	-	-	C	14952650	G	C	14952650	3	2	240	1	0	0	0	0	1	0	0	0	11287	942	33	2	893	2	OR7A10	19	14952650	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	194577	14952650	44176333	3776	22626										
OR7C2	0	genome.wustl.edu	37	chr19	15052452	15052452	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcatcctgaccatcagttCagactcccacctccacaccc	3	20	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	15052452	15052452	C	G	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	nonsense	c.152	p.S51*	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	59	0	0	43	18	29.51	-	-	-	G	15052452	C	G	15052452	4	3	240	1	0	0	0	0	0	1	0	0	11291	838	29	2	154	2	OR7C2	19	15052452	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	99802	15052452	44076531	3777	22627										
CYP4F2	0	genome.wustl.edu	37	chr19	16000453	16000453	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatctcatggtgtctttttGatacaagggcactgagctcc	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	16000453	16000453	G	C	SNP	CYP4F2	ENST00000221700	human	ensembl	69_37n	-1	known	nonsense	c.698	p.S233*	0.004	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	103	0	0	69	25	26.6	-	-	-	C	16000453	G	C	16000453	4	2	240	1	0	0	0	0	0	1	0	0	4219	1294	45	2	892	2	CYP4F2	19	16000453	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	948001	16000453	43128530	3778	22628										
SIN3B	0	genome.wustl.edu	37	chr19	16974522	16974522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctgggtctccttcccttCctggtctgaggactccacgt	9	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	16974522	16974522	C	T	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	missense	c.1394	p.S465F	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	48	0	0	37	20	35.09	-	-	-	T	16974522	C	T	16974522	3	4	240	1	0	0	0	0	1	0	0	0	14415	855	30	2	1436	2	SIN3B	19	16974522	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	974069	16974522	42154461	3779	22629										
NXNL1	0	genome.wustl.edu	37	chr19	17571358	17571358	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgcccctcctcacctcctCagatcatcctcaaagggcag	6	19	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	17571358	17571358	C	G	SNP	NXNL1	ENST00000301944	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	0.999	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	NXNL1	HGNC	ENSG00000171773	50	0	0	37	16	30.19	-	-	-	G	17571358	C	G	17571358	2	3	240	1	0	0	0	0	0	0	0	1	10861	813	29	2		2	NXNL1	19	17571358	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	596836	17571358	41557625	3780	22630										
PGLS	0	genome.wustl.edu	37	chr19	17631762	17631762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttcttcagcgcattttgGaggaccaggaggaaaacccg	11	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	17631762	17631762	G	C	SNP	PGLS	ENST00000252603	human	ensembl	69_37n	1	known	missense	c.649	p.E217Q	1.000	tigrfam_6-phosphogluconolactonase_DevB	tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	PGLS	HGNC	ENSG00000130313	42	0	0	26	11	29.73	-	-	-	C	17631762	G	C	17631762	3	2	240	1	0	0	0	0	1	0	0	0	11866	1175	41	2	667	2	PGLS	19	17631762	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	60404	17631762	41497221	3781	22631										
FAM129C	0	genome.wustl.edu	37	chr19	17657552	17657552	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcagccaggctctgaccactGagggcatctatgaggacgtc	13	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	17657552	17657552	G	A	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.1705	p.E569K	0.000	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	38	0	0	26	5	16.13	-	-	-	A	17657552	G	A	17657552	3	1	240	1	0	0	0	0	1	0	0	0	5478	1291	45	2	1759	2	FAM129C	19	17657552	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25790	17657552	41471431	3782	22632										
JAK3	0	genome.wustl.edu	37	chr19	17937556	17937556	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctgcgggcaggagctatGaaaaggacagggagtggtgt	19	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	17937556	17937556	G	A	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.3371	p.S1124L	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	90	0	0	62	17	21.52	-	-	-	A	17937556	G	A	17937556	3	1	240	1	0	0	0	0	1	0	0	0	7993	1294	45	2	7	2	JAK3	19	17937556	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	280004	17937556	41191427	3783	22633										
JAK3	0	genome.wustl.edu	37	chr19	17951135	17951135	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccccagtcttgagcttgttGatggcaaagtccagactgtg	11	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	17951135	17951135	G	A	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	silent	c.1158	p.I386	0.402	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	34	0	0	23	7	23.33	-	-	-	A	17951135	G	A	17951135	2	1	240	1	0	0	0	0	0	0	0	1	7993	1280	45	2		2	JAK3	19	17951135	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	13579	17951135	41177848	3784	22634										
MAST3	0	genome.wustl.edu	37	chr19	18245683	18245683	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttccgccagggctatggGaagccagtggactggtgggc	16	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	18245683	18245683	G	A	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	silent	c.1674	p.G558	0.994	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	113	0	0	94	25	21.01	-	-	-	A	18245683	G	A	18245683	2	1	240	1	0	0	0	0	0	0	0	1	9397	1161	41	2		2	MAST3	19	18245683	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	294548	18245683	40883300	3785	22635										
MAST3	0	genome.wustl.edu	37	chr19	18249895	18249895	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgaagaatcgtccacagaGatcccccagttctcctcctg	8	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	18249895	18249895	G	C	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	missense	c.2079	p.E693D	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	62	0	0	43	18	29.51	-	-	-	C	18249895	G	C	18249895	3	2	240	1	0	0	0	0	1	0	0	0	9397	933	33	2	2153	2	MAST3	19	18249895	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4212	18249895	40879088	3786	22636										
FKBP8	0	genome.wustl.edu	37	chr19	18649051	18649051	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgctggaggtgatagccttGatggcgaggtcgtaggagtt	18	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	18649051	18649051	G	C	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.831	p.I277M	1.000	smart_TPR_repeat	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	14	0	0	15	6	28.57	-	-	-	C	18649051	G	C	18649051	3	2	240	1	0	0	0	0	1	0	0	0	5960	1280	45	2	514	2	FKBP8	19	18649051	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	399156	18649051	40479932	3787	22637										
UPF1	0	genome.wustl.edu	37	chr19	18960956	18960956	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggacgggcccctgggggaGacagtcctggagtgctacaa	16	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	18960956	18960956	G	A	SNP	UPF1	ENST00000262803	human	ensembl	69_37n	1	known	silent	c.534	p.E178	1.000	pfam_RNA-helicase_UPF1_UPF2-interct	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom	-	no_errors	UPF1	HGNC	ENSG00000005007	39	0	0	26	17	39.53	-	-	-	A	18960956	G	A	18960956	2	1	240	1	0	0	0	0	0	0	0	1	17100	933	33	2		2	UPF1	19	18960956	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	311905	18960956	40168027	3788	22638										
NCAN	0	genome.wustl.edu	37	chr19	19338413	19338413	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atagagttgaggcacatggtGaggccaccgccacggctcca	13	12	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19338413	19338413	G	A	SNP	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	missense	c.1984	p.E662K	0.002	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	43	0	0	26	6	18.75	-	-	-	A	19338413	G	A	19338413	3	1	240	1	0	0	0	0	1	0	0	0	10276	1291	45	2	2010	2	NCAN	19	19338413	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	377457	19338413	39790570	3789	22639										
GMIP	0	genome.wustl.edu	37	chr19	19748735	19748735	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggatgggcctcacccgcctCagcacttcatccccctgaaa	9	17	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19748735	19748735	C	T	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	silent	c.921	p.L307	0.994	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	20	0	0	8	5	38.46	-	-	-	T	19748735	C	T	19748735	2	4	240	1	0	0	0	0	0	0	0	1	6543	813	29	2		2	GMIP	19	19748735	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	410322	19748735	39380248	3790	22640										
GMIP	0	genome.wustl.edu	37	chr19	19751358	19751358	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacccccctttgtccgaatGagccgcaagtccagttcctc	7	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19751358	19751358	G	A	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	silent	c.261	p.L87	0.134	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	88	0	0	67	18	21.18	-	-	-	A	19751358	G	A	19751358	2	1	240	1	0	0	0	0	0	0	0	1	6543	1277	45	2		2	GMIP	19	19751358	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2623	19751358	39377625	3791	22641										
ZNF14	0	genome.wustl.edu	37	chr19	19822358	19822358	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcccgtgtgagttctctCatgcattcgaaatttactgg	8	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19822358	19822358	C	T	SNP	ZNF14	ENST00000344099	human	ensembl	69_37n	-1	known	missense	c.1732	p.E578K	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	75	0	0	59	14	19.18	-	-	-	T	19822358	C	T	19822358	3	4	240	1	0	0	0	0	1	0	0	0	17824	835	29	2	200	2	ZNF14	19	19822358	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71000	19822358	39306625	3792	22642										
ZNF14	0	genome.wustl.edu	37	chr19	19823866	19823866	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccacatttgctacctcttCtactttcacagagtctctca	3	15	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19823866	19823866	C	G	SNP	ZNF14	ENST00000344099	human	ensembl	69_37n	-1	known	missense	c.224	p.R75T	0.007	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	92	0	0	53	17	24.29	-	-	-	G	19823866	C	G	19823866	3	3	240	1	0	0	0	0	1	0	0	0	17824	913	32	2	1708	2	ZNF14	19	19823866	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1508	19823866	39305117	3793	22643										
ZNF14	0	genome.wustl.edu	37	chr19	19823883	19823883	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttctactttcacagagtctCtcaaccatatgacatctgta	4	12	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	19823883	19823883	C	G	SNP	ZNF14	ENST00000344099	human	ensembl	69_37n	-1	known	missense	c.207	p.E69D	0.656	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	78	0	0	46	9	16.36	-	-	-	G	19823883	C	G	19823883	3	3	240	1	0	0	0	0	1	0	0	0	17824	912	32	2	1725	2	ZNF14	19	19823883	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	17	19823883	39305100	3794	22644										
ZNF93	0	genome.wustl.edu	37	chr19	20045094	20045094	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcaacccttagtaaacatGagatcattcatactggaaag	6	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	20045094	20045094	G	T	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	nonsense	c.1330	p.E444*	0.745	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	30	0	0	18	4	18.18	-	-	-	T	20045094	G	T	20045094	4	4	240	1	0	0	0	0	0	1	0	0	18295	1291	45	2	1344	2	ZNF93	19	20045094	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	221211	20045094	39083889	3795	22645										
ZNF714	0	genome.wustl.edu	37	chr19	21300392	21300392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacataagataattcattctGgagagaaatcttacaaatgt	6	5	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	21300392	21300392	G	A	SNP	ZNF714	ENST00000291770	human	ensembl	69_37n	1	known	missense	c.922	p.G308R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352	56	0	0	21	6	22.22	-	-	-	A	21300392	G	A	21300392	3	1	240	1	0	0	0	0	1	0	0	0	18214	1349	47	4	932	4	ZNF714	19	21300392	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1255298	21300392	37828591	3796	22646										
ZNF43	0	genome.wustl.edu	37	chr19	21991413	21991413	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacggtttttctgcagtatGaattctcttatgtgtagtaa	9	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	21991413	21991413	G	A	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.1426	p.H476Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	76	0	0	41	26	38.81	-	-	-	A	21991413	G	A	21991413	3	1	240	1	0	0	0	0	1	0	0	0	17999	1290	45	2	1007	2	ZNF43	19	21991413	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	691021	21991413	37137570	3797	22647										
ZNF208	0	genome.wustl.edu	37	chr19	22157244	22157244	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcacatttgtaggaattctCtctagtataaattcttttat	4	6	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	22157244	22157244	C	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.592	p.E198Q	0.926	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	97	0	0	62	23	27.06	-	-	-	G	22157244	C	G	22157244	3	3	240	1	0	0	0	0	1	0	0	0	17862	922	32	2	3254	2	ZNF208	19	22157244	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165831	22157244	36971739	3798	22648										
ZNF99	0	genome.wustl.edu	37	chr19	22942449	22942449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatcttttatgctctgatCtggccaaaagtcttgtgtaa	8	7	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	22942449	22942449	C	G	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.325	p.D109H	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	124	0	0	76	22	22.45	-	-	-	G	22942449	C	G	22942449	3	3	240	1	0	0	0	0	1	0	0	0	18297	913	32	2	2803	2	ZNF99	19	22942449	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	785205	22942449	36186534	3799	22649										
ZNF91	0	genome.wustl.edu	37	chr19	23544861	23544861	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttatgtttagcaagggttGaagaatggctaaaagctttg	11	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	23544861	23544861	G	A	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.920	p.S307L	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	78	0	0	52	15	22.39	-	-	-	A	23544861	G	A	23544861	3	1	240	1	0	0	0	0	1	0	0	0	18293	1294	45	2	2659	2	ZNF91	19	23544861	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	602412	23544861	35584122	3800	22650										
ZNF681	0	genome.wustl.edu	37	chr19	23926995	23926995	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaggctttcccacattcttCacatttgtatggtttctctt	5	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	23926995	23926995	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	missense	c.1357	p.E453K	0.859	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	92	0	0	54	22	28.95	-	-	-	T	23926995	C	T	23926995	3	4	240	1	0	0	0	0	1	0	0	0	18184	835	29	2	584	2	ZNF681	19	23926995	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	382134	23926995	35201988	3801	22651										
TSHZ3	0	genome.wustl.edu	37	chr19	31770204	31770204	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcgctctggtgccagtcGaagctcccgctgccacagct	12	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	31770204	31770204	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.495	p.F165	0.995	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	78	0	0	67	16	19.28	-	-	-	A	31770204	G	A	31770204	2	1	240	1	0	0	0	0	0	0	0	1	16721	1049	37	1		1	TSHZ3	19	31770204	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	7843209	31770204	27358779	3802	22652										
ZNF507	0	genome.wustl.edu	37	chr19	32844181	32844181	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatattaagcaacatggtCagcaaaatgaagtgatactg	8	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	32844181	32844181	C	T	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	1	known	nonsense	c.445	p.Q149*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813	58	0	0	25	22	46.81	-	-	-	T	32844181	C	T	32844181	4	4	240	1	0	0	0	0	0	1	0	0	18049	827	29	2	447	2	ZNF507	19	32844181	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1073977	32844181	26284802	3803	22653										
SLC7A9	0	genome.wustl.edu	37	chr19	33334770	33334770	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgtactcacataaaagatGatggcgggggctggagtgag	15	5	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	33334770	33334770	G	A	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	silent	c.1065	p.I355	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	38	0	0	34	4	10.53	-	-	-	A	33334770	G	A	33334770	2	1	240	1	0	0	0	0	0	0	0	1	14794	1280	45	2		2	SLC7A9	19	33334770	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	490589	33334770	25794213	3804	22654										
SLC7A9	0	genome.wustl.edu	37	chr19	33353106	33353106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgccctcgaaagaattatCaaaattctttgtgtttcctg	8	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	33353106	33353106	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	missense	c.622	p.D208N	0.953	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	52	0	0	38	22	36.67	-	-	-	T	33353106	C	T	33353106	3	4	240	1	0	0	0	0	1	0	0	0	14794	826	29	2	873	2	SLC7A9	19	33353106	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	18336	33353106	25775877	3805	22655										
GPATCH1	0	genome.wustl.edu	37	chr19	33579138	33579138	+	Missense_Mutation	SNP	T	T	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggcctttagtggaggtttcTctgctggatacttcaatact							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	33579138	33579138	T	A	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.172	p.S58T	1.000	pfam_DUF1604	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	101	0	0	65	16	19.75	-	-	-	A	33579138	T	A	33579138	3	1	240	1	0	0	0	0	1	0	0	0	6640	1551	54	5	178	5	GPATCH1	19	33579138	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	226032	33579138	25549845	3806	22656	213	2								
GPATCH1	0	genome.wustl.edu	37	chr19	33579139	33579139	+	Missense_Mutation	SNP	C	C	T													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcctttagtggaggtttctCtgctggatacttcaatactg							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	33579139	33579139	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.173	p.S58F	1.000	pfam_DUF1604	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	100	0	0	64	16	20	-	-	-	T	33579139	C	T	33579139	3	4	240	1	0	0	0	0	1	0	0	0	6640	913	32	2	179	2	GPATCH1	19	33579139	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1	33579139	25549844	3807	22657	213	2								
LSM14A	0	genome.wustl.edu	37	chr19	34712455	34712455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaaagaagattaaatgctGaaacatttggaatcccactt	7	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	34712455	34712455	G	A	SNP	LSM14A	ENST00000433627	human	ensembl	69_37n	1	known	missense	c.1180	p.E394K	1.000	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14A	HGNC	ENSG00000257103	127	0	0	104	38	26.57	-	-	-	A	34712455	G	A	34712455	3	1	240	1	0	0	0	0	1	0	0	0	9120	1291	45	2	1214	2	LSM14A	19	34712455	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1133316	34712455	24416528	3808	22658										
PDCD2L	0	genome.wustl.edu	37	chr19	34916975	34916975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaatcatcagactcccatgGaagaattttgtattatacaa	5	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	34916975	34916975	G	A	SNP	PDCD2L	ENST00000246535	human	ensembl	69_37n	1	known	missense	c.1027	p.E343K	1.000	pfam_PDCD2_C	pfam_PDCD2_C	-	no_errors	PDCD2L	HGNC	ENSG00000126249	129	0	0	80	33	29.2	-	-	-	A	34916975	G	A	34916975	3	1	240	1	0	0	0	0	1	0	0	0	11693	1175	41	2	1053	2	PDCD2L	19	34916975	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	204520	34916975	24212008	3809	22659										
ZNF181	0	genome.wustl.edu	37	chr19	35232203	35232203	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggcctttagccatgtctCatcacttactaaccatcaga	6	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	35232203	35232203	C	A	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	nonsense	c.917	p.S306*	0.041	smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	77	0	0	68	15	18.07	-	-	-	A	35232203	C	A	35232203	4	1	240	1	0	0	0	0	0	1	0	0	17845	838	29	2	931	2	ZNF181	19	35232203	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	315228	35232203	23896780	3810	22660										
ZNF30	0	genome.wustl.edu	37	chr19	35435446	35435446	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggccttcagttctggctcaTaccttgttcagcatcaaaga	8	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	35435446	35435446	T	C	SNP	ZNF30	ENST00000439785	human	ensembl	69_37n	1	known	missense	c.1579	p.Y527H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661	83	0	0	33	34	50	-	-	-	C	35435446	T	C	35435446	3	2	240	1	0	0	0	0	1	0	0	0	17926	1406	49	5	1593	5	ZNF30	19	35435446	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	203243	35435446	23693537	3811	22661										
FXYD1	0	genome.wustl.edu	37	chr19	35632070	35632070	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatcggaggcctcgtcatCgccgggatcctcttcatcct	10	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	35632070	35632070	C	T	SNP	FXYD1	ENST00000351325	human	ensembl	69_37n	1	known	silent	c.129	p.I43	0.008	pfam_Ion-transport_regulator_FXYD	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD1	HGNC	ENSG00000266964	52	0	0	51	11	17.74	-	-	-	T	35632070	C	T	35632070	2	4	240	1	0	0	0	0	0	0	0	1	6166	874	31	1		1	FXYD1	19	35632070	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	196624	35632070	23496913	3812	22662										
ATP4A	0	genome.wustl.edu	37	chr19	36041913	36041913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccctcacagcctctcaccGaatgggcatgaagttgaaga	10	13	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36041913	36041913	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.2986	p.R996W	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	38	0	0	42	12	22.22	-	-	-	A	36041913	G	A	36041913	3	1	240	1	0	0	0	0	1	0	0	0	1149	1072	37	1	133	1	ATP4A	19	36041913	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	409843	36041913	23087070	3813	22663										
ATP4A	0	genome.wustl.edu	37	chr19	36054383	36054383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatcttggcagccatgtccCcgccagggccaggacccagc	11	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36054383	36054383	C	T	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.59	p.G20E	0.997	pfam_ATPase_P-typ_H/K-transp_N	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	142	0	0	96	43	30.94	-	-	-	T	36054383	C	T	36054383	3	4	240	1	0	0	0	0	1	0	0	0	1149	623	22	4	3132	4	ATP4A	19	36054383	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	12470	36054383	23074600	3814	22664										
UPK1A	0	genome.wustl.edu	37	chr19	36164157	36164157	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtgctcatgctcatcgtCtacatcttcgagtgcgcctc	9	14	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36164157	36164157	C	G	SNP	UPK1A	ENST00000379013	human	ensembl	69_37n	1	known	silent	c.309	p.V103	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668	61	0	0	57	10	14.93	-	-	-	G	36164157	C	G	36164157	2	3	240	1	0	0	0	0	0	0	0	1	17104	900	32	2		2	UPK1A	19	36164157	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	109774	36164157	22964826	3815	22665										
ZBTB32	0	genome.wustl.edu	37	chr19	36207599	36207599	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccttcctctactcctcctCgaggccgtctcggccctcga	7	20	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36207599	36207599	C	G	SNP	ZBTB32	ENST00000262630	human	ensembl	69_37n	1	known	missense	c.1409	p.S470W	0.974	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590	38	0	0	36	11	23.4	-	-	-	G	36207599	C	G	36207599	3	3	240	1	0	0	0	0	1	0	0	0	17631	893	31	3	1427	3	ZBTB32	19	36207599	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43442	36207599	22921384	3816	22666										
MLL4	0	genome.wustl.edu	37	chr19	36211033	36211033	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtggttccagtgaaacatCagactggcagctggaaatgc	12	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36211033	36211033	C	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	nonsense	c.784	p.Q262*	0.849	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	23	0	0	22	8	26.67	-	-	-	T	36211033	C	T	36211033	4	4	240	1	0	0	0	0	0	1	0	0	9694	827	29	2	794	2	MLL4	19	36211033	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3434	36211033	22917950	3817	22667										
MLL4	0	genome.wustl.edu	37	chr19	36216490	36216490	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgccgtcgctgcaaattCtgccacgtctgtggacgcaa	11	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36216490	36216490	C	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	silent	c.3753	p.F1251	1.000	pirsf_MeTrfase_trithorax,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	64	0	0	45	20	30.77	-	-	-	T	36216490	C	T	36216490	2	4	240	1	0	0	0	0	0	0	0	1	9694	912	32	2		2	MLL4	19	36216490	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5457	36216490	22912493	3818	22668										
C19orf55	0	genome.wustl.edu	37	chr19	36257746	36257746	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaagcaccccttcggccaGaggatgacattctgtaccag	9	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36257746	36257746	G	C	SNP	C19orf55	ENST00000396908	human	ensembl	69_37n	1	known	missense	c.847	p.E283Q	1.000	NULL	NULL	-	no_errors	C19orf55	HGNC	ENSG00000167595	24	0	0	33	8	19.51	-	-	-	C	36257746	G	C	36257746	3	2	240	1	0	0	0	0	1	0	0	0	1955	943	33	2	877	2	C19orf55	19	36257746	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41256	36257746	22871237	3819	22669										
PRODH2	0	genome.wustl.edu	37	chr19	36303418	36303418	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgctcggagaaatgcgcctGagagccgggagcccaggagt	16	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36303418	36303418	G	C	SNP	PRODH2	ENST00000301175	human	ensembl	69_37n	-1	known	nonsense	c.443	p.S148*	0.939	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	15	0	0	24	6	20	-	-	-	C	36303418	G	C	36303418	4	2	240	1	0	0	0	0	0	1	0	0	12630	1294	45	2	1203	2	PRODH2	19	36303418	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	45672	36303418	22825565	3820	22670										
APLP1	0	genome.wustl.edu	37	chr19	36362197	36362197	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgccggttcttgcaccaGgagcgcatggaccaatgtga	14	11	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36362197	36362197	G	C	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	missense	c.483	p.Q161H	1.000	pfam_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	49	0	0	28	20	41.67	-	-	-	C	36362197	G	C	36362197	3	2	240	1	0	0	0	0	1	0	0	0	780	991	35	4	497	4	APLP1	19	36362197	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	58779	36362197	22766786	3821	22671										
WDR62	0	genome.wustl.edu	37	chr19	36558877	36558877	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctcctctgccagttcaatGagaagagggtgctggagaag	14	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36558877	36558877	G	C	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.847	p.E283Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	72	0	0	63	20	24.1	-	-	-	C	36558877	G	C	36558877	3	2	240	1	0	0	0	0	1	0	0	0	17410	1291	45	2	873	2	WDR62	19	36558877	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	196680	36558877	22570106	3822	22672										
ZNF146	0	genome.wustl.edu	37	chr19	36728111	36728111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagttctcaacccttgctCtgcatttgagaatacacaca	5	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	36728111	36728111	C	G	SNP	ZNF146	ENST00000443387	human	ensembl	69_37n	1	known	missense	c.769	p.L257V	0.272	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF146	HGNC	ENSG00000167635	78	0	0	51	23	31.08	-	-	-	G	36728111	C	G	36728111	3	3	240	1	0	0	0	0	1	0	0	0	17829	912	32	2	771	2	ZNF146	19	36728111	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	169234	36728111	22400872	3823	22673										
ZNF790	0	genome.wustl.edu	37	chr19	37314687	37314687	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagccacatccctgaacatCatcaactgttggaaagaata	6	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	37314687	37314687	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.15	p.M5I	0.019	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	109	0	0	80	21	20.79	-	-	-	T	37314687	C	T	37314687	3	4	240	1	0	0	0	0	1	0	0	0	18255	826	29	2	1907	2	ZNF790	19	37314687	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	586576	37314687	21814296	3824	22674										
ZNF420	0	genome.wustl.edu	37	chr19	37619746	37619746	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagaagccctatgaatgcaGagaatgtagaaaggccttta	11	6	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	37619746	37619746	G	A	SNP	ZNF420	ENST00000337995	human	ensembl	69_37n	1	known	missense	c.1853	p.R618K	0.008	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050	89	0	0	40	13	24.53	-	-	-	A	37619746	G	A	37619746	3	1	240	1	0	0	0	0	1	0	0	0	17993	942	33	2	1863	2	ZNF420	19	37619746	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	305059	37619746	21509237	3825	22675										
ZNF527	0	genome.wustl.edu	37	chr19	37880509	37880509	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taattcaccataagagaagtCatgcaggagagaaaccctat	8	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	37880509	37880509	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.1558	p.H520Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	96	0	0	30	29	49.15	-	-	-	T	37880509	C	T	37880509	3	4	240	1	0	0	0	0	1	0	0	0	18064	826	29	2	1572	2	ZNF527	19	37880509	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	260763	37880509	21248474	3826	22676										
ZNF570	0	genome.wustl.edu	37	chr19	37975205	37975205	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgactgtgaaaaagtcttCagccagagttcatcccttac	7	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	37975205	37975205	C	T	SNP	ZNF570	ENST00000330173	human	ensembl	69_37n	1	known	silent	c.681	p.F227	0.967	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827	57	0	0	18	5	21.74	-	-	-	T	37975205	C	T	37975205	2	4	240	1	0	0	0	0	0	0	0	1	18098	825	29	2		2	ZNF570	19	37975205	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	94696	37975205	21153778	3827	22677										
ZNF540	0	genome.wustl.edu	37	chr19	38102639	38102639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaaaaaatgtcaactgataGaaaacgtccctcttttactc	4	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38102639	38102639	G	C	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.458	p.R153T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	51	0	0	41	11	21.15	-	-	-	C	38102639	G	C	38102639	3	2	240	1	0	0	0	0	1	0	0	0	18071	942	33	2	472	2	ZNF540	19	38102639	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	127434	38102639	21026344	3828	22678										
ZFP30	0	genome.wustl.edu	37	chr19	38126340	38126340	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctctgatggagagttagatGatagccacgactgaaagtct	11	7	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38126340	38126340	G	C	SNP	ZFP30	ENST00000351218	human	ensembl	69_37n	-1	known	missense	c.1102	p.H368D	0.934	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	75	0	0	33	12	26.67	-	-	-	C	38126340	G	C	38126340	3	2	240	1	0	0	0	0	1	0	0	0	17740	1290	45	2	461	2	ZFP30	19	38126340	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	23701	38126340	21002643	3829	22679										
ZNF781	0	genome.wustl.edu	37	chr19	38160237	38160237	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattctctggtgttgaataaGagctgaacaattgttaaaag	9	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38160237	38160237	G	C	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	silent	c.813	p.L271	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	115	0	0	82	25	23.36	-	-	-	C	38160237	G	C	38160237	2	2	240	1	0	0	0	0	0	0	0	1	18247	929	33	2		2	ZNF781	19	38160237	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33897	38160237	20968746	3830	22680			1	46		4	4	394	N	G_C	2.804667e-05
ZNF781	0	genome.wustl.edu	37	chr19	38160561	38160561	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcaccagtgtgaattctctGatgctgaataagagttgagc	10	8	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38160561	38160561	G	A	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	silent	c.489	p.I163	0.969	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	97	0	0	57	18	24	-	-	-	A	38160561	G	A	38160561	2	1	240	1	0	0	0	0	0	0	0	1	18247	1280	45	2		2	ZNF781	19	38160561	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	324	38160561	20968422	3831	22681			1	46		4	4	394	N	G_C	2.804667e-05
ZNF781	0	genome.wustl.edu	37	chr19	38160578	38160578	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgatgctgaataagagttGagcgattgttaaatgccttc	10	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38160578	38160578	G	A	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	nonsense	c.472	p.Q158*	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	111	0	0	66	15	18.52	-	-	-	A	38160578	G	A	38160578	4	1	240	1	0	0	0	0	0	1	0	0	18247	1299	45	2	515	2	ZNF781	19	38160578	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17	38160578	20968405	3832	22682			1	46		4	4	394	N	G_C	2.804667e-05
ZNF781	0	genome.wustl.edu	37	chr19	38160630	38160630	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acattcgtaaagtctctcatCagtgtgaattttccgatgtc	7	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38160630	38160630	C	T	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	0.857	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	133	0	0	86	23	21.1	-	-	-	T	38160630	C	T	38160630	2	4	240	1	0	0	0	0	0	0	0	1	18247	813	29	2		2	ZNF781	19	38160630	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	52	38160630	20968353	3833	22683			1	46		4	4	394	N	G_C	2.804667e-05
FAM98C	0	genome.wustl.edu	37	chr19	38896172	38896172	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccaggaagcgttggagtCtctgtcccaaagcctcagag	11	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38896172	38896172	C	G	SNP	FAM98C	ENST00000252530	human	ensembl	69_37n	1	known	missense	c.647	p.S216C	0.048	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	75	0	0	59	26	30.59	-	-	-	G	38896172	C	G	38896172	3	3	240	1	0	0	0	0	1	0	0	0	5704	913	32	2	669	2	FAM98C	19	38896172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	735542	38896172	20232811	3834	22684										
RYR1	0	genome.wustl.edu	37	chr19	38979988	38979988	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacaggaaaaggaagatgagGaaaaagaggaagaggaggca	16	3	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	38979988	38979988	G	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	nonsense	c.5719	p.E1907*	0.524	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	128	0	0	82	31	27.43	-	-	-	T	38979988	G	T	38979988	4	4	240	1	0	0	0	0	0	1	0	0	13854	1175	41	2	5857	2	RYR1	19	38979988	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	83816	38979988	20148995	3835	22685										
RYR1	0	genome.wustl.edu	37	chr19	39075591	39075591	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccctccctcagtgttacctGtttcacatgtacgtgggtgt	9	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39075591	39075591	G	C	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.14655	p.L4885	0.987	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	109	0	0	124	37	22.98	-	-	-	C	39075591	G	C	39075591	2	2	240	1	0	0	0	0	0	0	0	1	13854	1364	48	4		4	RYR1	19	39075591	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	95603	39075591	20053392	3836	22686										
EIF3K	0	genome.wustl.edu	37	chr19	39123118	39123118	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggaaggtataactggctttGaagactctgtccgaaagtgt	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39123118	39123118	G	C	SNP	EIF3K	ENST00000248342	human	ensembl	69_37n	1	known	missense	c.403	p.E135Q	1.000	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25,superfamily_ARM-type_fold	-	no_errors	EIF3K	HGNC	ENSG00000178982	99	0	0	81	26	24.3	-	-	-	C	39123118	G	C	39123118	3	2	240	1	0	0	0	0	1	0	0	0	5058	1291	45	2	421	2	EIF3K	19	39123118	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	47527	39123118	20005865	3837	22687										
HNRNPL	0	genome.wustl.edu	37	chr19	39329203	39329203	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccgtcttccaacccgtatGactgaccaggcatgatggct	9	14	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39329203	39329203	G	A	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	missense	c.1391	p.S464L	0.996	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	83	0	0	37	30	44.12	-	-	-	A	39329203	G	A	39329203	3	1	240	1	0	0	0	0	1	0	0	0	7321	1294	45	2	394	2	HNRNPL	19	39329203	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	206085	39329203	19799780	3838	22688										
FBXO17	0	genome.wustl.edu	37	chr19	39412197	39412197	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggtctggttgggcagcttCagcgcctgcaggtagaactg	16	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39412197	39412197	C	T	SNP	FBXO17	ENST00000430193	human	ensembl	69_37n	-1	known	silent	c.510	p.L170	0.188	pirsf_Ser-tRNA-synth_IIa,superfamily_tRNA-bd_arm,tigrfam_Ser-tRNA-synth_IIa	pirsf_Ser-tRNA-synth_IIa,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	FBXO17	HGNC	ENSG00000104835	17	0	0	33	7	17.5	-	-	-	T	39412197	C	T	39412197	2	4	240	1	0	0	0	0	0	0	0	1	5776	813	29	2		2	FBXO17	19	39412197	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	82994	39412197	19716786	3839	22689										
FBXO17	0	genome.wustl.edu	37	chr19	39416865	39416865	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcagggcccgcactgcctCagtcacagctgccttctctt	9	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39416865	39416865	C	A	SNP	FBXO17	ENST00000430193	human	ensembl	69_37n	-1	known	nonsense	c.343	p.E115*	0.925	pirsf_Ser-tRNA-synth_IIa,superfamily_tRNA-bd_arm,tigrfam_Ser-tRNA-synth_IIa	pirsf_Ser-tRNA-synth_IIa,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	FBXO17	HGNC	ENSG00000104835	45	0	0	26	5	16.13	-	-	-	A	39416865	C	A	39416865	4	1	240	1	0	0	0	0	0	1	0	0	5776	835	29	2		2	FBXO17	19	39416865	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4668	39416865	19712118	3840	22690										
PAK4	0	genome.wustl.edu	37	chr19	39668392	39668392	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacttcaacgagccacccctCaaagccatgaagatgattcg	7	13	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39668392	39668392	C	G	SNP	PAK4	ENST00000358301	human	ensembl	69_37n	1	known	silent	c.1563	p.L521	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	91	0	0	88	22	20	-	-	-	G	39668392	C	G	39668392	2	3	240	1	0	0	0	0	0	0	0	1	11476	813	29	2		2	PAK4	19	39668392	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	251527	39668392	19460591	3841	22691										
PAK4	0	genome.wustl.edu	37	chr19	39668417	39668417	+	Frame_Shift_Del	DEL	A	A	-													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccatgaagatgattcgggacAacctgccaccccgactgaag							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39668417	39668417	A	-	DEL	PAK4	ENST00000358301	human	ensembl	69_37n	1	known	frame_shift_del	c.1588	p.N530fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	78	0	0	70	24	25.26	-	-	-	-	39668417	A	-	39668417	7	5	240	1	0	1	0	1	0	0	0	0	11476	130	5	0	1614	0	PAK4	19	39668417	Frame_Shift_Del	DEL	A	TCGA-AC-A23H-01A-11D-A159-09	25	39668417	19460566	3842	22692										
ZFP36	0	genome.wustl.edu	37	chr19	39899202	39899202	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtccctgggatccgaccctGatgaatatgccagcagcggc	12	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39899202	39899202	G	A	SNP	ZFP36	ENST00000248673	human	ensembl	69_37n	1	known	missense	c.844	p.D282N	0.805	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016	20	0	0	13	4	23.53	-	-	-	A	39899202	G	A	39899202	3	1	240	1	0	0	0	0	1	0	0	0	17741	1290	45	2	850	2	ZFP36	19	39899202	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230785	39899202	19229781	3843	22693										
PLEKHG2	0	genome.wustl.edu	37	chr19	39904788	39904788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccaagcctcgggtgtggccGaagaggtgaagtgtgtgact	16	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39904788	39904788	G	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.62	p.R21Q	0.025	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	54	0	0	54	12	18.18	-	-	-	A	39904788	G	A	39904788	3	1	240	1	0	0	0	0	1	0	0	0	12143	1058	37	1	64	1	PLEKHG2	19	39904788	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	5586	39904788	19224195	3844	22694										
PLEKHG2	0	genome.wustl.edu	37	chr19	39909616	39909616	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccagcgcctcttctttgaGaaccaccctgcctccatccc	5	20	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39909616	39909616	G	C	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.1236	p.E412D	1.000	smart_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	32	0	0	22	9	29.03	-	-	-	C	39909616	G	C	39909616	3	2	240	1	0	0	0	0	1	0	0	0	12143	933	33	2	1274	2	PLEKHG2	19	39909616	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4828	39909616	19219367	3845	22695										
PLEKHG2	0	genome.wustl.edu	37	chr19	39915317	39915317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagcggctgcacctccacttCcggagccaagccttacagat	9	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39915317	39915317	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.3544	p.P1182S	0.006	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	55	0	0	35	9	20.45	-	-	-	T	39915317	C	T	39915317	3	4	240	1	0	0	0	0	1	0	0	0	12143	855	30	2	3614	2	PLEKHG2	19	39915317	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5701	39915317	19213666	3846	22696										
SUPT5H	0	genome.wustl.edu	37	chr19	39963950	39963950	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgaacacccatgtacggctCacagacacccctccaggatg	8	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39963950	39963950	C	G	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	nonsense	c.2366	p.S789*	0.995	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	30	0	0	18	7	28	-	-	-	G	39963950	C	G	39963950	4	3	240	1	0	0	0	0	0	1	0	0	15490	838	29	2	2456	2	SUPT5H	19	39963950	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	48633	39963950	19165033	3847	22697										
TIMM50	0	genome.wustl.edu	37	chr19	39978708	39978708	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactcacttccaggatatttCatgtctgaatcgggacccag	8	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39978708	39978708	C	G	SNP	TIMM50	ENST00000314349	human	ensembl	69_37n	1	known	nonsense	c.1013	p.S338*	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197	58	0	0	51	14	21.54	-	-	-	G	39978708	C	G	39978708	4	3	240	1	0	0	0	0	0	1	0	0	16008	838	29	2	1047	2	TIMM50	19	39978708	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14758	39978708	19150275	3848	22698										
DLL3	0	genome.wustl.edu	37	chr19	39989620	39989620	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccaccagaaggccatggtCtccccacggatgtccgggct	11	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	39989620	39989620	C	T	SNP	DLL3	ENST00000205143	human	ensembl	69_37n	1	known	silent	c.6	p.V2	0.057	NULL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DLL3	HGNC	ENSG00000090932	36	0	0	24	14	36.84	-	-	-	T	39989620	C	T	39989620	2	4	240	1	0	0	0	0	0	0	0	1	4603	900	32	2		2	DLL3	19	39989620	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10912	39989620	19139363	3849	22699										
FCGBP	0	genome.wustl.edu	37	chr19	40362869	40362869	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggaagtactcagagggactCagcaccgcctggcaggtcgc	14	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	40362869	40362869	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.15201	p.L5067	0.997	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	13	0	0	12	7	36.84	-	-	-	T	40362869	C	T	40362869	2	4	240	1	0	0	0	0	0	0	0	1	5824	813	29	2		2	FCGBP	19	40362869	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	373249	40362869	18766114	3850	22700										
PSMC4	0	genome.wustl.edu	37	chr19	40480442	40480442	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccaccagaccagaagccaGatgtgatgtacgcggacatc	10	13	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	40480442	40480442	G	C	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.481	p.D161H	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	32	0	0	27	5	15.62	-	-	-	C	40480442	G	C	40480442	3	2	240	1	0	0	0	0	1	0	0	0	12769	942	33	2	499	2	PSMC4	19	40480442	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	117573	40480442	18648541	3851	22701										
ZNF546	0	genome.wustl.edu	37	chr19	40521389	40521389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgtcggtatcatcttactCaacattttagacttcatact	5	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	40521389	40521389	C	G	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	missense	c.2212	p.Q738E	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	68	0	0	55	12	17.91	-	-	-	G	40521389	C	G	40521389	3	3	240	1	0	0	0	0	1	0	0	0	18074	827	29	2	2230	2	ZNF546	19	40521389	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	40947	40521389	18607594	3852	22702										
MAP3K10	0	genome.wustl.edu	37	chr19	40698484	40698484	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgcccggggtggtgcactGagcagggtgctggcaggtcg	19	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	40698484	40698484	G	A	SNP	MAP3K10	ENST00000253055	human	ensembl	69_37n	1	known	silent	c.546	p.L182	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758	19	0	0	8	13	61.9	-	-	-	A	40698484	G	A	40698484	2	1	240	1	0	0	0	0	0	0	0	1	9315	1277	45	2		2	MAP3K10	19	40698484	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	177095	40698484	18430499	3853	22703										
ITPKC	0	genome.wustl.edu	37	chr19	41243662	41243662	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagatctcccccttcttCaagacccacgaggtgcgagc	10	15	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	41243662	41243662	C	G	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	missense	c.1836	p.F612L	1.000	pfam_IPK	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	92	0	0	99	32	24.43	-	-	-	G	41243662	C	G	41243662	3	3	240	1	0	0	0	0	1	0	0	0	7973	825	29	2	1858	2	ITPKC	19	41243662	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	545178	41243662	17885321	3854	22704										
RAB4B	0	genome.wustl.edu	37	chr19	41292818	41292818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcgtccctccgccagcttCggcagcctcggagtgcccag	12	17	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	41292818	41292818	C	T	SNP	RAB4B	ENST00000357052	human	ensembl	69_37n	1	known	missense	c.592	p.R198W	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4B	HGNC	ENSG00000167578	31	0	0	21	13	38.24	-	-	-	T	41292818	C	T	41292818	3	4	240	1	0	0	0	0	1	0	0	0	13030	875	31	1	618	1	RAB4B	19	41292818	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	49156	41292818	17836165	3855	22705										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41774180	41774180	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctacgatacccaagtcatCaaacaagaaaacgagtcagg	7	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	41774180	41774180	C	T	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	silent	c.348	p.I116	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	120	1	0.81	72	21	22.58	-	-	-	T	41774180	C	T	41774180	2	4	240	1	0	0	0	0	0	0	0	1	7325	816	29	2		2	HNRNPUL1	19	41774180	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	481362	41774180	17354803	3856	22706										
CEACAM3	0	genome.wustl.edu	37	chr19	42314883	42314883	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccacagatgtcccctctctCcactgcccaggcccccctac	5	22	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42314883	42314883	C	A	SNP	CEACAM3	ENST00000357396	human	ensembl	69_37n	1	known	missense	c.641	p.S214Y	0.000	NULL	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956	88	0	0	69	18	20.69	-	-	-	A	42314883	C	A	42314883	3	1	240	1	0	0	0	0	1	0	0	0	3222	855	30	2	663	2	CEACAM3	19	42314883	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	540703	42314883	16814100	3857	22707										
ARHGEF1	0	genome.wustl.edu	37	chr19	42392344	42392344	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggattttgagaacgagctgGagacagtgagtgggagatag	17	3	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42392344	42392344	G	C	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	missense	c.151	p.E51Q	0.997	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	100	0	0	99	37	27.21	-	-	-	C	42392344	G	C	42392344	3	2	240	1	0	0	0	0	1	0	0	0	895	1175	41	2	161	2	ARHGEF1	19	42392344	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	77461	42392344	16736639	3858	22708										
ZNF526	0	genome.wustl.edu	37	chr19	42730115	42730115	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacctcagccgccaccagctGacccatacgggtgcacgtcc	9	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42730115	42730115	G	T	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	silent	c.1560	p.L520	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	23	0	0	18	9	33.33	-	-	-	T	42730115	G	T	42730115	2	4	240	1	0	0	0	0	0	0	0	1	18063	1277	45	2		2	ZNF526	19	42730115	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	337771	42730115	16398868	3859	22709										
GSK3A	0	genome.wustl.edu	37	chr19	42744160	42744160	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgactagttccctggtctCtgccagccgtgcctggtaca	12	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42744160	42744160	C	A	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	nonsense	c.418	p.E140*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	84	0	0	78	26	25	-	-	-	A	42744160	C	A	42744160	4	1	240	1	0	0	0	0	0	1	0	0	6874	922	32	2	1073	2	GSK3A	19	42744160	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14045	42744160	16384823	3860	22710										
CIC	0	genome.wustl.edu	37	chr19	42797401	42797401	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactgcccccacctgctgagGagcggaccagcgccaagggc	13	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42797401	42797401	G	C	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	missense	c.3763	p.E1255Q	0.998	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	10	0	0	7	5	41.67	-	-	-	C	42797401	G	C	42797401	3	2	240	1	0	0	0	0	1	0	0	0	3453	1175	41	2	3821	2	CIC	19	42797401	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	53241	42797401	16331582	3861	22711										
LIPE	0	genome.wustl.edu	37	chr19	42930419	42930419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccagattcacactcacCtgtatcctggtagtgtctgt	7	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	42930419	42930419	C	T	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	missense	c.883	p.A295T	0.560	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	80	0	0	81	21	20.59	-	-	-	T	42930419	C	T	42930419	3	4	240	1	0	0	0	0	1	0	0	0	8877	695	24	4	2387	4	LIPE	19	42930419	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	133018	42930419	16198564	3862	22712										
CEACAM1	0	genome.wustl.edu	37	chr19	43023314	43023314	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgtggagcaggtcaggttCacagagtccttatctcctgt	11	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	43023314	43023314	C	T	SNP	CEACAM1	ENST00000161559	human	ensembl	69_37n	-1	known	silent	c.1032	p.V344	0.009	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM1	HGNC	ENSG00000079385	164	0	0	167	41	19.71	-	-	-	T	43023314	C	T	43023314	2	4	240	1	0	0	0	0	0	0	0	1	3216	813	29	2		2	CEACAM1	19	43023314	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	92895	43023314	16105669	3863	22713										
PSG11	0	genome.wustl.edu	37	chr19	43519417	43519417	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttcccattaattgtccaaGaatactgtgctggtgggtta	9	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	43519417	43519417	G	C	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	missense	c.815	p.S272C	0.208	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	153	0	0	105	31	22.79	-	-	-	C	43519417	G	C	43519417	3	2	240	1	0	0	0	0	1	0	0	0	12734	942	33	2	200	2	PSG11	19	43519417	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	496103	43519417	15609566	3864	22714										
PSG9	0	genome.wustl.edu	37	chr19	43772168	43772168	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcatttcccctttgtaccaGaagtagccaggaagattctg	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	43772168	43772168	G	C	SNP	PSG9	ENST00000270077	human	ensembl	69_37n	-1	known	missense	c.198	p.F66L	0.008	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG9	HGNC	ENSG00000183668	236	0	0	141	44	23.78	-	-	-	C	43772168	G	C	43772168	3	2	240	1	0	0	0	0	1	0	0	0	12742	933	33	2	1102	2	PSG9	19	43772168	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	252751	43772168	15356815	3865	22715										
XRCC1	0	genome.wustl.edu	37	chr19	44047576	44047576	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccaccccatagagctggtGaggaagtaacttctgcttct	9	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44047576	44047576	G	A	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	missense	c.1870	p.H624Y	0.996	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	60	0	0	47	16	25.4	-	-	-	A	44047576	G	A	44047576	3	1	240	1	0	0	0	0	1	0	0	0	17549	1290	45	2	35	2	XRCC1	19	44047576	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	275408	44047576	15081407	3866	22716										
ZNF283	0	genome.wustl.edu	37	chr19	44351412	44351412	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggcttgcagtcatggctCaaaacttgttcaacatgaga	10	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44351412	44351412	C	G	SNP	ZNF283	ENST00000324461	human	ensembl	69_37n	1	known	nonsense	c.659	p.S220*	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637	43	0	0	16	5	23.81	-	-	-	G	44351412	C	G	44351412	4	3	240	1	0	0	0	0	0	1	0	0	17916	838	29	2	673	2	ZNF283	19	44351412	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	303836	44351412	14777571	3867	22717										
ZNF226	0	genome.wustl.edu	37	chr19	44680265	44680265	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagtctcttacatgtgttGagcgtggaaaaggcttctgt	12	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44680265	44680265	G	C	SNP	ZNF226	ENST00000337433	human	ensembl	69_37n	1	known	missense	c.850	p.E284Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380	60	0	0	47	11	18.97	-	-	-	C	44680265	G	C	44680265	3	2	240	1	0	0	0	0	1	0	0	0	17876	1291	45	2	918	2	ZNF226	19	44680265	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	328853	44680265	14448718	3868	22718										
ZNF227	0	genome.wustl.edu	37	chr19	44739132	44739132	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgcgggaatacatatctGagtgagtcacagattcagag	11	7	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44739132	44739132	G	A	SNP	ZNF227	ENST00000313040	human	ensembl	69_37n	1	known	silent	c.549	p.L183	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115	51	0	0	32	17	34.69	-	-	-	A	44739132	G	A	44739132	2	1	240	1	0	0	0	0	0	0	0	1	17877	1277	45	2		2	ZNF227	19	44739132	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	58867	44739132	14389851	3869	22719										
ZFP112	0	genome.wustl.edu	37	chr19	44832306	44832306	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaagtgttgaggccttactGaagcctttaccacattcttc	7	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44832306	44832306	G	A	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	silent	c.2073	p.F691	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	91	0	0	62	20	24.39	-	-	-	A	44832306	G	A	44832306	2	1	240	1	0	0	0	0	0	0	0	1	17734	1281	45	2		2	ZFP112	19	44832306	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	93174	44832306	14296677	3870	22720										
ZNF285	0	genome.wustl.edu	37	chr19	44891869	44891869	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgaggctgtcatcatgctGagcacgtctgtacaatttct	9	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44891869	44891869	G	C	SNP	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	missense	c.538	p.Q180E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	120	0	0	84	21	20	-	-	-	C	44891869	G	C	44891869	3	2	240	1	0	0	0	0	1	0	0	0	17918	1299	45	2	1238	2	ZNF285	19	44891869	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59563	44891869	14237114	3871	22721										
ZNF229	0	genome.wustl.edu	37	chr19	44934510	44934510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aattctcaattggaaaacacGgcgtagatgctccttcccac	7	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44934510	44934510	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.446	p.P149L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	98	0	0	63	27	30	-	-	-	A	44934510	G	A	44934510	3	1	240	1	0	0	0	0	1	0	0	0	17878	1116	39	1	2035	1	ZNF229	19	44934510	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	42641	44934510	14194473	3872	22722										
ZNF180	0	genome.wustl.edu	37	chr19	44980940	44980940	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaagaacataactctggctGaaggatttcccacactgatt	7	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44980940	44980940	G	A	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	silent	c.1758	p.F586	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	124	1	0.79	87	39	30.95	-	-	-	A	44980940	G	A	44980940	2	1	240	1	0	0	0	0	0	0	0	1	17844	1281	45	2		2	ZNF180	19	44980940	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46430	44980940	14148043	3873	22723										
ZNF180	0	genome.wustl.edu	37	chr19	44981513	44981513	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttctctgatgggaaacaagGtgcgagctccggctgaagga	15	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44981513	44981513	G	C	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	missense	c.1185	p.H395Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	74	0	0	29	12	29.27	-	-	-	C	44981513	G	C	44981513	3	2	240	1	0	0	0	0	1	0	0	0	17844	1252	44	4	897	4	ZNF180	19	44981513	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	573	44981513	14147470	3874	22724										
ZNF180	0	genome.wustl.edu	37	chr19	44981616	44981616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgcgagctccagctgaagGatttcccacactgattacat	9	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	44981616	44981616	G	A	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361F	0.080	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	72	0	0	34	8	19.05	-	-	-	A	44981616	G	A	44981616	3	1	240	1	0	0	0	0	1	0	0	0	17844	1174	41	2	1000	2	ZNF180	19	44981616	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	103	44981616	14147367	3875	22725										
PPP1R13L	0	genome.wustl.edu	37	chr19	45885896	45885896	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgaccgactcgccctcgcgGaaggacagctcgtccccgaa	12	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	45885896	45885896	G	C	SNP	PPP1R13L	ENST00000360957	human	ensembl	69_37n	-1	known	missense	c.2337	p.F779L	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881	20	0	0	18	6	25	-	-	-	C	45885896	G	C	45885896	3	2	240	1	0	0	0	0	1	0	0	0	12435	1165	41	2	157	2	PPP1R13L	19	45885896	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	904280	45885896	13243087	3876	22726										
FOSB	0	genome.wustl.edu	37	chr19	45975845	45975845	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggaagaaaaagcagagctgGagtcggagatcgccgagctc	15	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	45975845	45975845	G	C	SNP	FOSB	ENST00000353609	human	ensembl	69_37n	1	known	missense	c.592	p.E198Q	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740	21	0	0	21	7	25	-	-	-	C	45975845	G	C	45975845	3	2	240	1	0	0	0	0	1	0	0	0	6032	1175	41	2	606	2	FOSB	19	45975845	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	89949	45975845	13153138	3877	22727										
OPA3	0	genome.wustl.edu	37	chr19	46087996	46087996	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcccaagtatagcagcttCgccatagggaacgcgcccac	10	14	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	46087996	46087996	C	G	SNP	OPA3	ENST00000323060	human	ensembl	69_37n	-1	known	silent	c.27	p.A9	1.000	pfam_OPA3-like	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741	21	0	0	29	6	17.14	-	-	-	G	46087996	C	G	46087996	2	3	240	1	0	0	0	0	0	0	0	1	10945	871	31	3		3	OPA3	19	46087996	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	112151	46087996	13040987	3878	22728										
EML2	0	genome.wustl.edu	37	chr19	46124794	46124794	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagaggaccacccgccgatCacggccccctccagacacca	8	21	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	46124794	46124794	C	T	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	missense	c.1546	p.D516N	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	46	0	0	29	6	16.67	-	-	-	T	46124794	C	T	46124794	3	4	240	1	0	0	0	0	1	0	0	0	5134	826	29	2	1046	2	EML2	19	46124794	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36798	46124794	13004189	3879	22729										
SYMPK	0	genome.wustl.edu	37	chr19	46334773	46334773	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggctgacaggcgccgcttGatcaggacgctctctgtctt	13	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	46334773	46334773	G	C	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.1467	p.I489M	1.000	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	97	0	0	93	28	23.14	-	-	-	C	46334773	G	C	46334773	3	2	240	1	0	0	0	0	1	0	0	0	15531	1280	45	2	2421	2	SYMPK	19	46334773	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	209979	46334773	12794210	3880	22730										
IGFL4	0	genome.wustl.edu	37	chr19	46543498	46543498	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcacaactgtctggttctGagagcccaaagactccaggc	9	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	46543498	46543498	G	C	SNP	IGFL4	ENST00000377697	human	ensembl	69_37n	-1	known	missense	c.247	p.Q83E	0.077	NULL	NULL	-	no_errors	IGFL4	HGNC	ENSG00000204869	51	0	0	46	11	19.3	-	-	-	C	46543498	G	C	46543498	3	2	240	1	0	0	0	0	1	0	0	0	7643	1299	45	2	135	2	IGFL4	19	46543498	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	208725	46543498	12585485	3881	22731										
PPP5C	0	genome.wustl.edu	37	chr19	46886682	46886682	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccagattctggtacaggtCaaagaggtcctctccaagct	9	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	46886682	46886682	C	T	SNP	PPP5C	ENST00000478046	human	ensembl	69_37n	1	known	missense	c.644	p.S215L	0.980	pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP5C	HGNC	ENSG00000011485	21	0	0	29	10	25.64	-	-	-	T	46886682	C	T	46886682	3	4	240	1	0	0	0	0	1	0	0	0	12483	813	29	2	666	2	PPP5C	19	46886682	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	343184	46886682	12242301	3882	22732										
SAE1	0	genome.wustl.edu	37	chr19	47634224	47634224	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggctggcggcggcattagcGaggaggaggcggcacagtat	19	8	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	47634224	47634224	G	C	SNP	SAE1	ENST00000270225	human	ensembl	69_37n	1	known	missense	c.37	p.E13Q	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230	44	0	0	7	7	50	-	-	-	C	47634224	G	C	47634224	3	2	240	1	0	0	0	0	1	0	0	0	13891	1059	37	3	39	3	SAE1	19	47634224	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	747542	47634224	11494759	3883	22733										
DHX34	0	genome.wustl.edu	37	chr19	47856605	47856605	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacgacccacgttaccgcatCaacctctctgttcttggccc	6	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	47856605	47856605	C	T	SNP	DHX34	ENST00000328771	human	ensembl	69_37n	1	known	silent	c.318	p.I106	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815	36	0	0	23	7	23.33	-	-	-	T	47856605	C	T	47856605	2	4	240	1	0	0	0	0	0	0	0	1	4543	816	29	2		2	DHX34	19	47856605	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	222381	47856605	11272378	3884	22734										
LIG1	0	genome.wustl.edu	37	chr19	48631251	48631251	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acggcttcggtgtccaggatGaaggatgtgaccgatgggag	17	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	48631251	48631251	G	A	SNP	LIG1	ENST00000263274	human	ensembl	69_37n	-1	known	silent	c.1848	p.F616	1.000	pfam_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold-like,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	95	0	0	58	45	43.69	-	-	-	A	48631251	G	A	48631251	2	1	240	1	0	0	0	0	0	0	0	1	8836	1281	45	2		2	LIG1	19	48631251	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	774646	48631251	10497732	3885	22735										
CARD8	0	genome.wustl.edu	37	chr19	48734038	48734038	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcaccccacattaccttgGagggagatgaagtgggggag	15	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	48734038	48734038	G	C	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	silent	c.768	p.L256	0.071	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	17	0	0	19	5	20.83	-	-	-	C	48734038	G	C	48734038	2	2	240	1	0	0	0	0	0	0	0	1	2676	1161	41	2		2	CARD8	19	48734038	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	102787	48734038	10394945	3886	22736										
ZNF114	0	genome.wustl.edu	37	chr19	48785657	48785657	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accttcgcagacgtggctgtGaacttcaccaaagaggagtg	12	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	48785657	48785657	G	A	SNP	ZNF114	ENST00000315849	human	ensembl	69_37n	1	known	silent	c.39	p.V13	0.914	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	53	0	0	43	17	28.33	-	-	-	A	48785657	G	A	48785657	2	1	240	1	0	0	0	0	0	0	0	1	17812	1277	45	2		2	ZNF114	19	48785657	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	51619	48785657	10343326	3887	22737										
KCNJ14	0	genome.wustl.edu	37	chr19	48967728	48967728	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcgttttgagccagttctCttccagcgtggctcccagta	9	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	48967728	48967728	C	G	SNP	KCNJ14	ENST00000342291	human	ensembl	69_37n	1	known	silent	c.1005	p.L335	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ14	HGNC	ENSG00000182324	80	0	0	83	26	23.85	-	-	-	G	48967728	C	G	48967728	2	3	240	1	0	0	0	0	0	0	0	1	8102	900	32	2		2	KCNJ14	19	48967728	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	182071	48967728	10161255	3888	22738										
LMTK3	0	genome.wustl.edu	37	chr19	49004371	49004371	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagggctgggccccaaactCaaacagctcccacagggtca	11	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49004371	49004371	C	G	SNP	LMTK3	ENST00000270238	human	ensembl	69_37n	-1	known	missense	c.1120	p.E374Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	15	0	0	10	11	52.38	-	-	-	G	49004371	C	G	49004371	3	3	240	1	0	0	0	0	1	0	0	0	8916	835	29	2	3373	2	LMTK3	19	49004371	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	36643	49004371	10124612	3889	22739										
TULP2	0	genome.wustl.edu	37	chr19	49391496	49391496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtagactcagaggcctctCtcttcttttccaagtcttct	6	13	6	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49391496	49391496	C	G	SNP	TULP2	ENST00000221399	human	ensembl	69_37n	-1	known	missense	c.659	p.R220T	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804	28	0	0	27	10	27.03	-	-	-	G	49391496	C	G	49391496	3	3	240	1	0	0	0	0	1	0	0	0	16871	913	32	2	927	2	TULP2	19	49391496	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	387125	49391496	9737487	3890	22740										
NUCB1	0	genome.wustl.edu	37	chr19	49422292	49422292	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcttgctcctgcagctggaGaaagtgtacgacccaaagaa	11	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49422292	49422292	G	C	SNP	NUCB1	ENST00000263273	human	ensembl	69_37n	1	known	missense	c.822	p.E274D	1.000	pfscan_EF_HAND_2	pfscan_EF_HAND_2	-	no_errors	NUCB1	HGNC	ENSG00000104805	63	0	0	60	13	17.81	-	-	-	C	49422292	G	C	49422292	3	2	240	1	0	0	0	0	1	0	0	0	10791	933	33	2	852	2	NUCB1	19	49422292	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30796	49422292	9706691	3891	22741										
NUCB1	0	genome.wustl.edu	37	chr19	49425159	49425159	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggccccggctgcccaccctGaggggcagctcaagttccac	12	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49425159	49425159	G	C	SNP	NUCB1	ENST00000263273	human	ensembl	69_37n	1	known	missense	c.1249	p.E417Q	0.660	NULL	pfscan_EF_HAND_2	-	no_errors	NUCB1	HGNC	ENSG00000104805	14	0	0	13	6	31.58	-	-	-	C	49425159	G	C	49425159	3	2	240	1	0	0	0	0	1	0	0	0	10791	1291	45	2	1291	2	NUCB1	19	49425159	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2867	49425159	9703824	3892	22742										
BAX	0	genome.wustl.edu	37	chr19	49464088	49464088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctgtgcaccaaggtgccgGaactgatcagaaccatcatg	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49464088	49464088	G	A	SNP	BAX	ENST00000293288	human	ensembl	69_37n	1	known	missense	c.391	p.E131K	0.977	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BAX	HGNC	ENSG00000087088	39	0	0	36	14	28	-	-	-	A	49464088	G	A	49464088	3	1	240	1	0	0	0	0	1	0	0	0	1332	1175	41	2	409	2	BAX	19	49464088	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	38929	49464088	9664895	3893	22743										
CGB1	0	genome.wustl.edu	37	chr19	49538904	49538904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggatggacttggaaggctgGggggaggggcctttgaggaa	22	4	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49538904	49538904	G	T	SNP	CGB1	ENST00000301407	human	ensembl	69_37n	-1	known	missense	c.431	p.P144H	0.000	NULL	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB1	HGNC	ENSG00000267631	124	0	0	69	26	27.37	-	-	-	T	49538904	G	T	49538904	3	4	240	1	0	0	0	0	1	0	0	0	3326	1232	43	4	40	4	CGB1	19	49538904	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	74816	49538904	9590079	3894	22744										
HRC	0	genome.wustl.edu	37	chr19	49657064	49657064	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctcagaatcatccttcctCaaatggcttctatccttgac	4	14	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49657064	49657064	C	G	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.1431	p.L477F	0.000	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	167	0	0	128	55	30.05	-	-	-	G	49657064	C	G	49657064	3	3	240	1	0	0	0	0	1	0	0	0	7403	825	29	2	692	2	HRC	19	49657064	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118160	49657064	9471919	3895	22745										
TRPM4	0	genome.wustl.edu	37	chr19	49703955	49703955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggggctcctgaggccacggGacagtgacttcccaagtatc	13	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	49703955	49703955	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	missense	c.2866	p.D956N	0.983	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	31	0	0	24	5	17.24	-	-	-	A	49703955	G	A	49703955	3	1	240	1	0	0	0	0	1	0	0	0	16684	1174	41	2	2940	2	TRPM4	19	49703955	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46891	49703955	9425028	3896	22746										
PRR12	0	genome.wustl.edu	37	chr19	50102590	50102590	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcgggtgatgccatatCaggcactgaccacaacagcc	9	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50102590	50102590	C	T	SNP	PRR12	ENST00000418929	human	ensembl	69_37n	1	known	missense	c.3740	p.S1247L	0.071	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	25	0	0	14	6	30	-	-	-	T	50102590	C	T	50102590	3	4	240	1	0	0	0	0	1	0	0	0	12665	838	29	2	3758	2	PRR12	19	50102590	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	398635	50102590	9026393	3897	22747										
SCAF1	0	genome.wustl.edu	37	chr19	50156060	50156060	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggagtcggcgccttcctCagggcccccgccaaagccac	11	18	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50156060	50156060	C	G	SNP	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	nonsense	c.2414	p.S805*	0.001	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	60	0	0	31	15	32.61	-	-	-	G	50156060	C	G	50156060	4	3	240	1	0	0	0	0	0	1	0	0	13955	838	29	2	2436	2	SCAF1	19	50156060	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	53470	50156060	8972923	3898	22748										
IRF3	0	genome.wustl.edu	37	chr19	50165237	50165237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccccaggtcaaacacgcctCcttccttgtccttggggacc	9	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50165237	50165237	C	T	SNP	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	missense	c.950	p.G317E	0.004	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	45	0	0	27	12	30.77	-	-	-	T	50165237	C	T	50165237	3	4	240	1	0	0	0	0	1	0	0	0	7885	855	30	2	345	2	IRF3	19	50165237	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9177	50165237	8963746	3899	22749										
CPT1C	0	genome.wustl.edu	37	chr19	50195590	50195590	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggaactcagtgcccctgtGctgcaggagatctacctctc	11	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50195590	50195590	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	silent	c.81	p.V27	0.022	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	21	0	0	11	24	68.57	-	-	-	A	50195590	G	A	50195590	2	1	240	1	0	0	0	0	0	0	0	1	3863	1306	46	4		4	CPT1C	19	50195590	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	30353	50195590	8933393	3900	22750										
CPT1C	0	genome.wustl.edu	37	chr19	50210805	50210805	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatccttcaccctaatcgtCttctctaacgggaagctggg	8	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50210805	50210805	C	G	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	silent	c.1374	p.V458	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	78	0	0	54	26	32.5	-	-	-	G	50210805	C	G	50210805	2	3	240	1	0	0	0	0	0	0	0	1	3863	900	32	2		2	CPT1C	19	50210805	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15215	50210805	8918178	3901	22751										
ZNF473	0	genome.wustl.edu	37	chr19	50549316	50549316	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacgagagtgttcacgccaGagaaaaacaaggattttttg	10	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50549316	50549316	G	C	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	missense	c.1616	p.R539T	0.435	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	52	0	0	33	13	28.26	-	-	-	C	50549316	G	C	50549316	3	2	240	1	0	0	0	0	1	0	0	0	18027	942	33	2	1630	2	ZNF473	19	50549316	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	338511	50549316	8579667	3902	22752										
MYH14	0	genome.wustl.edu	37	chr19	50783297	50783297	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtcccttccctgcaggctGaactggagaatgtgtctggg	13	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50783297	50783297	G	A	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.4036	p.E1346K	0.998	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	62	0	0	48	25	34.25	-	-	-	A	50783297	G	A	50783297	3	1	240	1	0	0	0	0	1	0	0	0	10105	1291	45	2	4154	2	MYH14	19	50783297	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	233981	50783297	8345686	3903	22753										
MYBPC2	0	genome.wustl.edu	37	chr19	50954172	50954172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggctacgccctgtcgctctCggccaagctcaacttcctgg	10	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	50954172	50954172	C	G	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.1559	p.S520W	0.997	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	43	0	0	40	7	14.89	-	-	-	G	50954172	C	G	50954172	3	3	240	1	0	0	0	0	1	0	0	0	10084	893	31	3	1613	3	MYBPC2	19	50954172	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	170875	50954172	8174811	3904	22754										
SHANK1	0	genome.wustl.edu	37	chr19	51190856	51190856	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacccatctcctccagctctGaggtcatagatttggaacgc	8	14	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51190856	51190856	G	C	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	nonsense	c.2372	p.S791*	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	18	0	0	15	5	25	-	-	-	C	51190856	G	C	51190856	4	2	240	1	0	0	0	0	0	1	0	0	14353	1294	45	2	4137	2	SHANK1	19	51190856	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	236684	51190856	7938127	3905	22755										
GPR32	0	genome.wustl.edu	37	chr19	51274289	51274289	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccgttgcatctctgtcctCtaccccgtctgggccctgaa	9	16	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51274289	51274289	C	G	SNP	GPR32	ENST00000270590	human	ensembl	69_37n	1	known	silent	c.432	p.L144	0.565	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511	72	0	0	70	25	26.32	-	-	-	G	51274289	C	G	51274289	2	3	240	1	0	0	0	0	0	0	0	1	6738	900	32	2		2	GPR32	19	51274289	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83433	51274289	7854694	3906	22756										
KLK1	0	genome.wustl.edu	37	chr19	51323205	51323205	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgacacacagcatgaagtCtgtcaccttctggacgtggg	11	12	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51323205	51323205	C	G	SNP	KLK1	ENST00000301420	human	ensembl	69_37n	-1	known	missense	c.583	p.D195H	0.885	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK1	HGNC	ENSG00000167748	55	0	0	61	10	14.08	-	-	-	G	51323205	C	G	51323205	3	3	240	1	0	0	0	0	1	0	0	0	8450	913	32	2	213	2	KLK1	19	51323205	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	48916	51323205	7805778	3907	22757										
KLK5	0	genome.wustl.edu	37	chr19	51455866	51455866	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccccagaagcaaggctgtGatcagagcacagagcaccca	10	14	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51455866	51455866	G	C	SNP	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	missense	c.48	p.I16M	0.004	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	38	0	0	28	20	41.67	-	-	-	C	51455866	G	C	51455866	3	2	240	1	0	0	0	0	1	0	0	0	8460	1280	45	2	853	2	KLK5	19	51455866	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	132661	51455866	7673117	3908	22758										
KLK8	0	genome.wustl.edu	37	chr19	51503887	51503887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaccctctggggcagtgcGagggctgggaaggccactgt	17	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51503887	51503887	G	C	SNP	KLK8	ENST00000391806	human	ensembl	69_37n	-1	known	missense	c.158	p.S53W	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455	24	0	0	36	10	21.74	-	-	-	C	51503887	G	C	51503887	3	2	240	1	0	0	0	0	1	0	0	0	8463	1059	37	3	775	3	KLK8	19	51503887	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48021	51503887	7625096	3909	22759										
KLK11	0	genome.wustl.edu	37	chr19	51528000	51528000	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctgccagggctgggagtGaggcttgcactcgaacccct	14	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51528000	51528000	G	A	SNP	KLK11	ENST00000319756	human	ensembl	69_37n	-1	known	missense	c.187	p.H63Y	0.901	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757	16	0	0	14	4	22.22	-	-	-	A	51528000	G	A	51528000	3	1	240	1	0	0	0	0	1	0	0	0	8452	1290	45	2	752	2	KLK11	19	51528000	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24113	51528000	7600983	3910	22760										
KLK11	0	genome.wustl.edu	37	chr19	51528904	51528904	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcatggcctggaggggggagGagcgggccccaggttcctct	18	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51528904	51528904	G	A	SNP	KLK11	ENST00000319756	human	ensembl	69_37n	-1	known	missense	c.80	p.S27F	0.888	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757	29	0	0	12	6	33.33	-	-	-	A	51528904	G	A	51528904	3	1	240	1	0	0	0	0	1	0	0	0	8452	1174	41	2	863	2	KLK11	19	51528904	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	904	51528904	7600079	3911	22761										
CD33	0	genome.wustl.edu	37	chr19	51728396	51728396	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccgctgctgctactgctgCccctgctgtgggcaggtgag	15	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51728396	51728396	C	G	SNP	CD33	ENST00000262262	human	ensembl	69_37n	1	known	missense	c.22	p.P8A	0.397	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	43	0	0	56	15	21.13	-	-	-	G	51728396	C	G	51728396	3	3	240	1	0	0	0	0	1	0	0	0	3034	739	26	4	24	4	CD33	19	51728396	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	199492	51728396	7400587	3912	22762										
CLDND2	0	genome.wustl.edu	37	chr19	51871790	51871790	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggacgttggccacgaggctGagcagaatgcccccactctg	13	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	51871790	51871790	G	A	SNP	CLDND2	ENST00000291715	human	ensembl	69_37n	-1	known	silent	c.42	p.L14	0.479	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND2	HGNC	ENSG00000160318	36	0	0	34	13	27.66	-	-	-	A	51871790	G	A	51871790	2	1	240	1	0	0	0	0	0	0	0	1	3524	1277	45	2		2	CLDND2	19	51871790	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	143394	51871790	7257193	3913	22763										
SIGLEC6	0	genome.wustl.edu	37	chr19	52034085	52034085	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggcccagggaggtgggggCagctgacatccaggagaaga	20	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52034085	52034085	C	A	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	missense	c.556	p.A186S	0.000	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	68	0	0	50	14	21.54	-	-	-	A	52034085	C	A	52034085	3	1	240	1	0	0	0	0	1	0	0	0	14401	710	25	4	862	4	SIGLEC6	19	52034085	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162295	52034085	7094898	3914	22764										
ZNF613	0	genome.wustl.edu	37	chr19	52448792	52448792	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggaaaatccttgctcagaGagtcatagcttatcacatac	7	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52448792	52448792	G	A	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	silent	c.1656	p.E552	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	52	0	0	33	17	34	-	-	-	A	52448792	G	A	52448792	2	1	240	1	0	0	0	0	0	0	0	1	18134	933	33	2		2	ZNF613	19	52448792	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	414707	52448792	6680191	3915	22765										
ZNF350	0	genome.wustl.edu	37	chr19	52469055	52469055	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatcagttagccaagacttCttgatgaaggctttcccaca	8	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52469055	52469055	C	G	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	missense	c.651	p.K217N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	119	0	0	113	26	18.71	-	-	-	G	52469055	C	G	52469055	3	3	240	1	0	0	0	0	1	0	0	0	17959	912	32	2	951	2	ZNF350	19	52469055	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20263	52469055	6659928	3916	22766										
ZNF350	0	genome.wustl.edu	37	chr19	52472315	52472315	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcccggtacaggtccttctGagcagcgcccaggagttgcc	12	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52472315	52472315	G	A	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	nonsense	c.85	p.Q29*	0.813	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	168	0	0	97	36	27.07	-	-	-	A	52472315	G	A	52472315	4	1	240	1	0	0	0	0	0	1	0	0	17959	1299	45	2	1525	2	ZNF350	19	52472315	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3260	52472315	6656668	3917	22767										
ZNF432	0	genome.wustl.edu	37	chr19	52537581	52537581	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagggcttctctcctgtatGagttcgctgatgtatgatga	12	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52537581	52537581	G	A	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.1351	p.H451Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	102	0	0	78	23	22.77	-	-	-	A	52537581	G	A	52537581	3	1	240	1	0	0	0	0	1	0	0	0	18002	1290	45	2	611	2	ZNF432	19	52537581	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	65266	52537581	6591402	3918	22768										
ZNF432	0	genome.wustl.edu	37	chr19	52543831	52543831	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcatctggtttgctgacttGataacctgtttacgggaaat	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52543831	52543831	G	C	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.148	p.Q50E	0.030	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	167	0	0	115	37	24.34	-	-	-	C	52543831	G	C	52543831	3	2	240	1	0	0	0	0	1	0	0	0	18002	1299	45	2	1818	2	ZNF432	19	52543831	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6250	52543831	6585152	3919	22769										
ZNF534	0	genome.wustl.edu	37	chr19	52938380	52938380	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctccatgttggagcaaaaGagagatccctggactctgca	10	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	52938380	52938380	G	C	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.228	p.K76N	0.003	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	144	0	0	105	35	25	-	-	-	C	52938380	G	C	52938380	3	2	240	1	0	0	0	0	1	0	0	0	18069	933	33	2	238	2	ZNF534	19	52938380	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	394549	52938380	6190603	3920	22770										
ZNF83	0	genome.wustl.edu	37	chr19	53117179	53117179	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtgtgaaatttgatggaaGacctttccacattcattaca	8	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53117179	53117179	G	C	SNP	ZNF83	ENST00000301096	human	ensembl	69_37n	-1	known	silent	c.639	p.V213	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766	68	0	0	37	11	22.92	-	-	-	C	53117179	G	C	53117179	2	2	240	1	0	0	0	0	0	0	0	1	18276	929	33	2		2	ZNF83	19	53117179	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	178799	53117179	6011804	3921	22771										
ZNF28	0	genome.wustl.edu	37	chr19	53303166	53303166	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgagggatgacatctgactGaaggtcttgccacactcatt	10	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53303166	53303166	G	A	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	silent	c.1932	p.F644	0.526	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	143	0	0	90	31	25.62	-	-	-	A	53303166	G	A	53303166	2	1	240	1	0	0	0	0	0	0	0	1	17909	1281	45	2		2	ZNF28	19	53303166	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	185987	53303166	5825817	3922	22772										
ZNF468	0	genome.wustl.edu	37	chr19	53345029	53345029	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctttgggatgttgaaactGaggaagcattgttgatagac	12	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53345029	53345029	G	A	SNP	ZNF468	ENST00000243639	human	ensembl	69_37n	-1	known	missense	c.518	p.S173L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604	119	0	0	102	27	20.93	-	-	-	A	53345029	G	A	53345029	3	1	240	1	0	0	0	0	1	0	0	0	18024	1294	45	2	1054	2	ZNF468	19	53345029	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41863	53345029	5783954	3923	22773										
ZNF320	0	genome.wustl.edu	37	chr19	53384069	53384069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacacttgtgaggtttctctCctgtatgaatcctcctatgt	7	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53384069	53384069	C	A	SNP	ZNF320	ENST00000391781	human	ensembl	69_37n	-1	known	missense	c.1310	p.G437V	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	87	0	0	68	26	27.66	-	-	-	A	53384069	C	A	53384069	3	1	240	1	0	0	0	0	1	0	0	0	17935	855	30	2	223	2	ZNF320	19	53384069	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39040	53384069	5744914	3924	22774										
ZNF347	0	genome.wustl.edu	37	chr19	53643729	53643729	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctctccggtatgaattctCtgatgccttgcaagttttga	8	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53643729	53643729	C	G	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	missense	c.2355	p.Q785H	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	143	0	0	113	30	20.98	-	-	-	G	53643729	C	G	53643729	3	3	240	1	0	0	0	0	1	0	0	0	17957	912	32	2	171	2	ZNF347	19	53643729	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	259660	53643729	5485254	3925	22775										
ZNF845	0	genome.wustl.edu	37	chr19	53848773	53848773	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcagggtctattgacattCagggatgtggccatagaatt	11	6	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53848773	53848773	C	A	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.30	p.F10L	0.682	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	245	0	0	150	50	25	-	-	-	A	53848773	C	A	53848773	3	1	240	1	0	0	0	0	1	0	0	0	18284	825	29	2	36	2	ZNF845	19	53848773	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	205044	53848773	5280210	3926	22776										
ZNF761	0	genome.wustl.edu	37	chr19	53959979	53959979	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacatgccatcgtagacttCatactggagaaaaacaagtg	8	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53959979	53959979	C	T	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.868	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	84	0	0	38	35	47.95	-	-	-	T	53959979	C	T	53959979	1	4	240	0	1	0	0	0	0	0	0	0	18230	826	29	2		2	ZNF761	19	53959979	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	111206	53959979	5169004	3927	22777										
ZNF813	0	genome.wustl.edu	37	chr19	53993818	53993818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaaagaaatagccatgaagCacccatgacagaaatcaaaa	7	8	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	53993818	53993818	C	T	SNP	ZNF813	ENST00000396403	human	ensembl	69_37n	1	known	missense	c.332	p.A111V	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346	183	0	0	98	15	13.27	-	-	-	T	53993818	C	T	53993818	3	4	240	1	0	0	0	0	1	0	0	0	18268	710	25	4	342	4	ZNF813	19	53993818	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33839	53993818	5135165	3928	22778										
CNOT3	0	genome.wustl.edu	37	chr19	54649325	54649325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgagcctggccctgggctCgccagcagaagcaggaccgg	15	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	54649325	54649325	C	T	SNP	CNOT3	ENST00000447684	human	ensembl	69_37n	1	known	missense	c.286	p.R96C	1.000	NULL	pfam_Not_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNOT3	HGNC	ENSG00000088038	21	0	0	29	7	19.44	-	-	-	T	54649325	C	T	54649325	3	4	240	1	0	0	0	0	1	0	0	0	3650	899	31	1		1	CNOT3	19	54649325	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	655507	54649325	4479658	3929	22779										
RPS9	0	genome.wustl.edu	37	chr19	54705145	54705145	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcgaccaagagctgaagctGatcggtgagtggccaaggct	14	10	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	54705145	54705145	G	T	SNP	RPS9	ENST00000302907	human	ensembl	69_37n	1	known	silent	c.93	p.L31	1.000	pfam_Ribosomal_S4/S9_N,tigrfam_Ribosomal_S4/S9_euk/arc	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,smart_S4_RNA-bd,pfscan_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889	58	0	0	43	9	17.31	-	-	-	T	54705145	G	T	54705145	2	4	240	1	0	0	0	0	0	0	0	1	13748	1277	45	2		2	RPS9	19	54705145	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	55820	54705145	4423838	3930	22780										
LILRB3	0	genome.wustl.edu	37	chr19	54721331	54721331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtcactgcctgggggtcttCatcgtgtgggctctgctgga	15	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	54721331	54721331	C	T	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.1657	p.E553K	0.003	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	138	0	0	109	22	16.79	-	-	-	T	54721331	C	T	54721331	3	4	240	1	0	0	0	0	1	0	0	0	8847	835	29	2	297	2	LILRB3	19	54721331	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16186	54721331	4407652	3931	22781										
LILRA4	0	genome.wustl.edu	37	chr19	54848842	54848842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggcgctgggggaggccatCggccccctccttgtacagag	16	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	54848842	54848842	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.781	p.D261N	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	27	0	0	18	7	28	-	-	-	T	54848842	C	T	54848842	3	4	240	1	0	0	0	0	1	0	0	0	8842	884	31	1	734	1	LILRA4	19	54848842	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	127511	54848842	4280141	3932	22782										
KIR2DL1	0	genome.wustl.edu	37	chr19	55284901	55284901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacacttccttctgcacagaGaggggatgtttaacgacact	9	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55284901	55284901	G	C	SNP	KIR2DL1	ENST00000336077	human	ensembl	69_37n	1	known	missense	c.187	p.E63Q	0.008	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498	182	0	0	88	136	60.71	-	-	-	C	55284901	G	C	55284901	3	2	240	1	0	0	0	0	1	0	0	0	8369	943	33	2	197	2	KIR2DL1	19	55284901	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	436059	55284901	3844082	3933	22783										
KIR3DL1	0	genome.wustl.edu	37	chr19	55331322	55331322	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctcacgcctcgttggacaGatccatgatggggtctccaa	10	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55331322	55331322	G	T	SNP	KIR3DL1	ENST00000402254	human	ensembl	69_37n	1	known	missense	c.510	p.Q170H	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633	290	0	0	217	57	20.8	-	-	-	T	55331322	G	T	55331322	3	4	240	1	0	0	0	0	1	0	0	0	8373	933	33	2	524	2	KIR3DL1	19	55331322	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46421	55331322	3797661	3934	22784										
KIR2DS4	0	genome.wustl.edu	37	chr19	55351126	55351126	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctacgagtggtcaaactcGagtgatccactgcttgtttc	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55351126	55351126	G	C	SNP	KIR2DS4	ENST00000339924	human	ensembl	69_37n	1	known	missense	c.614	p.R205P	0.018	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIR2DS4	HGNC	ENSG00000221957	182	0	0	182	59	24.48	-	-	-	C	55351126	G	C	55351126	3	2	240	1	0	0	0	0	1	0	0	0	8372	1058	37	3	628	3	KIR2DS4	19	55351126	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19804	55351126	3777857	3935	22785										
NLRP7	0	genome.wustl.edu	37	chr19	55449562	55449562	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatctgtccagaggcgaagaGagcgaagatcctgccgagcc	13	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55449562	55449562	G	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.2063	p.S688C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	35	0	0	27	15	35.71	-	-	-	C	55449562	G	C	55449562	3	2	240	1	0	0	0	0	1	0	0	0	10554	942	33	2	1162	2	NLRP7	19	55449562	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	98436	55449562	3679421	3936	22786										
NLRP7	0	genome.wustl.edu	37	chr19	55450564	55450564	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtttgatgtccggtgacatCcggcagccaaaagtggcctc	12	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55450564	55450564	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	silent	c.1707	p.R569	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	60	0	0	43	15	25.86	-	-	-	T	55450564	C	T	55450564	2	4	240	1	0	0	0	0	0	0	0	1	10554	842	30	2		2	NLRP7	19	55450564	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1002	55450564	3678419	3937	22787										
NLRP7	0	genome.wustl.edu	37	chr19	55450673	55450673	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttgagtctttcttctccgGaaagcagcttctgtacgtcc	8	12	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55450673	55450673	G	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1598	p.S533C	0.013	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	53	0	0	60	24	28.57	-	-	-	C	55450673	G	C	55450673	3	2	240	1	0	0	0	0	1	0	0	0	10554	1174	41	2	1631	2	NLRP7	19	55450673	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	109	55450673	3678310	3938	22788										
GP6	0	genome.wustl.edu	37	chr19	55543613	55543613	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcttcatggccgggatgaaGaggactgcctgatcctggta	13	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55543613	55543613	G	C	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	25	0	0	15	16	51.61	-	-	-	C	55543613	G	C	55543613	2	2	240	1	0	0	0	0	0	0	0	1	6634	929	33	2		2	GP6	19	55543613	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	92940	55543613	3585370	3939	22789										
TNNT1	0	genome.wustl.edu	37	chr19	55645293	55645293	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcggttgtacagcacgttGatctgcggaggcagaagaca	14	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55645293	55645293	G	C	SNP	TNNT1	ENST00000588981	human	ensembl	69_37n	-1	known	missense	c.753	p.I251M	1.000	NULL	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048	53	0	0	44	15	25.42	-	-	-	C	55645293	G	C	55645293	3	2	240	1	0	0	0	0	1	0	0	0	16425	1280	45	2	91	2	TNNT1	19	55645293	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	101680	55645293	3483690	3940	22790										
SYT5	0	genome.wustl.edu	37	chr19	55687229	55687229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgccaatcccattgcttgcaGaatgcccaccagcagctgca	8	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55687229	55687229	G	C	SNP	SYT5	ENST00000354308	human	ensembl	69_37n	-1	known	missense	c.388	p.L130V	0.860	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990	51	0	0	41	12	22.64	-	-	-	C	55687229	G	C	55687229	3	2	240	1	0	0	0	0	1	0	0	0	15569	933	33	2	792	2	SYT5	19	55687229	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	41936	55687229	3441754	3941	22791										
PTPRH	0	genome.wustl.edu	37	chr19	55703097	55703097	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggatgcccacaaaggctCcggcaatgacccctgtgggg	15	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	55703097	55703097	C	G	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	missense	c.2270	p.G757A	0.225	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	36	0	0	48	20	29.41	-	-	-	G	55703097	C	G	55703097	3	3	240	1	0	0	0	0	1	0	0	0	12886	855	30	2	1117	2	PTPRH	19	55703097	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15868	55703097	3425886	3942	22792										
NLRP11	0	genome.wustl.edu	37	chr19	56320646	56320646	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtatgaacttgtaacggtCtttatgagtgttgctcggca	12	6	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	56320646	56320646	C	G	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.1330	p.D444H	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	44	0	0	40	13	24.53	-	-	-	G	56320646	C	G	56320646	3	3	240	1	0	0	0	0	1	0	0	0	10545	913	32	2	1803	2	NLRP11	19	56320646	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	617549	56320646	2808337	3943	22793										
NLRP13	0	genome.wustl.edu	37	chr19	56443480	56443480	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaaaagaaaggacagattCaaagggtcggcagctctcaa	10	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	56443480	56443480	C	G	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	missense	c.198	p.L66F	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	37	0	0	28	8	22.22	-	-	-	G	56443480	C	G	56443480	3	3	240	1	0	0	0	0	1	0	0	0	10547	825	29	2	2975	2	NLRP13	19	56443480	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	122834	56443480	2685503	3944	22794										
ZNF471	0	genome.wustl.edu	37	chr19	57035792	57035792	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagctatggacttgagtgttCcacttttgaagaaaattgga	10	5	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57035792	57035792	C	G	SNP	ZNF471	ENST00000308031	human	ensembl	69_37n	1	known	missense	c.356	p.S119C	0.011	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263	78	0	0	58	14	19.44	-	-	-	G	57035792	C	G	57035792	3	3	240	1	0	0	0	0	1	0	0	0	18026	855	30	2	370	2	ZNF471	19	57035792	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	592312	57035792	2093191	3945	22795										
ZFP28	0	genome.wustl.edu	37	chr19	57060376	57060376	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacctctcaagaaggacttCtgcgaaggaaagctatccca	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57060376	57060376	C	T	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	silent	c.573	p.F191	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	53	0	0	48	14	22.58	-	-	-	T	57060376	C	T	57060376	2	4	240	1	0	0	0	0	0	0	0	1	17738	912	32	2		2	ZFP28	19	57060376	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	24584	57060376	2068607	3946	22796										
PEG3	0	genome.wustl.edu	37	chr19	57286215	57286215	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgagatatgaattccgactGaagactctgccacagtcaca	8	10	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57286215	57286215	G	C	SNP	PEG3	ENST00000221722	human	ensembl	69_37n	-1	known	missense	c.1425	p.F475L	0.456	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	PEG3	HGNC	ENSG00000198300	65	0	0	46	21	31.34	-	-	-	C	57286215	G	C	57286215	3	2	240	1	0	0	0	0	1	0	0	0	11793	1281	45	2		2	PEG3	19	57286215	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	225839	57286215	1842768	3947	22797										
PEG3	0	genome.wustl.edu	37	chr19	57326917	57326917	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acattcatagagcatccctcGagggcgaaatgtttgttcac	9	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57326917	57326917	G	C	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.2893	p.R965G	0.983	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	73	0	0	52	16	23.53	-	-	-	C	57326917	G	C	57326917	3	2	240	1	0	0	0	0	1	0	0	0	11793	1066	37	3	1877	3	PEG3	19	57326917	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	40702	57326917	1802066	3948	22798										
PEG3	0	genome.wustl.edu	37	chr19	57327706	57327706	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaatgaattttctgatgctCactgagctctgagctttgca	9	8	3	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57327706	57327706	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.2104	p.E702K	0.124	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	63	0	0	45	15	25	-	-	-	T	57327706	C	T	57327706	3	4	240	1	0	0	0	0	1	0	0	0	11793	835	29	2	2666	2	PEG3	19	57327706	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	789	57327706	1801277	3949	22799										
ZIM3	0	genome.wustl.edu	37	chr19	57646297	57646297	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggggctcctatctggagtGaattcttttctggtgcctaa	11	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57646297	57646297	G	A	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.1408	p.H470Y	0.993	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	123	0	0	77	27	25.96	-	-	-	A	57646297	G	A	57646297	3	1	240	1	0	0	0	0	1	0	0	0	17781	1290	45	2	14	2	ZIM3	19	57646297	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	318591	57646297	1482686	3950	22800										
ZIM3	0	genome.wustl.edu	37	chr19	57646979	57646979	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctctttagtatgcattttCtgatgttgaaagagatttga	8	4	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57646979	57646979	C	G	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.726	p.Q242H	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	122	0	0	94	22	18.97	-	-	-	G	57646979	C	G	57646979	3	3	240	1	0	0	0	0	1	0	0	0	17781	912	32	2	696	2	ZIM3	19	57646979	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	682	57646979	1482004	3951	22801										
ZNF543	0	genome.wustl.edu	37	chr19	57839857	57839857	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagccctatgagtgcattGagtgtgggaaggccttcaac	13	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57839857	57839857	G	C	SNP	ZNF543	ENST00000321545	human	ensembl	69_37n	1	known	missense	c.1027	p.E343Q	0.917	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	104	0	0	44	17	27.87	-	-	-	C	57839857	G	C	57839857	3	2	240	1	0	0	0	0	1	0	0	0	18072	1291	45	2	1041	2	ZNF543	19	57839857	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	192878	57839857	1289126	3952	22802										
ZNF548	0	genome.wustl.edu	37	chr19	57910564	57910564	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttagacatcagagagttcaCaccggagaaaggccgtatga	12	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57910564	57910564	C	T	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	silent	c.945	p.H315	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	99	0	0	65	14	17.72	-	-	-	T	57910564	C	T	57910564	2	4	240	1	0	0	0	0	0	0	0	1	18076	477	17	4		4	ZNF548	19	57910564	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	70707	57910564	1218419	3953	22803										
VN1R1	0	genome.wustl.edu	37	chr19	57967285	57967285	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgctattcagtgggccattCactaatagaagaacagatgc	9	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	57967285	57967285	C	T	SNP	VN1R1	ENST00000321039	human	ensembl	69_37n	-1	known	silent	c.570	p.V190	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R1	HGNC	ENSG00000178201	116	0	0	62	48	43.64	-	-	-	T	57967285	C	T	57967285	2	4	240	1	0	0	0	0	0	0	0	1	17275	813	29	2		2	VN1R1	19	57967285	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	56721	57967285	1161698	3954	22804										
ZNF416	0	genome.wustl.edu	37	chr19	58084933	58084933	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcaggtgcaaaatgtcggtCaggaatgggacacacatgtc	13	8	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58084933	58084933	C	A	SNP	ZNF416	ENST00000196489	human	ensembl	69_37n	-1	known	silent	c.339	p.L113	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817	85	0	0	78	23	22.77	-	-	-	A	58084933	C	A	58084933	2	1	240	1	0	0	0	0	0	0	0	1	17989	813	29	2		2	ZNF416	19	58084933	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	117648	58084933	1044050	3955	22805										
ZIK1	0	genome.wustl.edu	37	chr19	58102389	58102389	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagagagttcacactggaGaaaggccttataagtgtggt	12	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58102389	58102389	G	C	SNP	ZIK1	ENST00000307468	human	ensembl	69_37n	1	known	missense	c.1210	p.E404Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649	92	0	0	60	23	27.71	-	-	-	C	58102389	G	C	58102389	3	2	240	1	0	0	0	0	1	0	0	0	17779	943	33	2	1224	2	ZIK1	19	58102389	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17456	58102389	1026594	3956	22806										
ZNF530	0	genome.wustl.edu	37	chr19	58117499	58117499	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacagcaggattagacacttGagagttcccactggacgaaa	10	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58117499	58117499	G	T	SNP	ZNF530	ENST00000332854	human	ensembl	69_37n	1	known	missense	c.606	p.L202F	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647	41	0	0	33	13	28.26	-	-	-	T	58117499	G	T	58117499	3	4	240	1	0	0	0	0	1	0	0	0	18067	1281	45	2	616	2	ZNF530	19	58117499	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15110	58117499	1011484	3957	22807										
ZNF530	0	genome.wustl.edu	37	chr19	58117788	58117788	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaggccttatgactgcagtGaatgtggcaaatcctttcgc	10	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58117788	58117788	G	A	SNP	ZNF530	ENST00000332854	human	ensembl	69_37n	1	known	missense	c.895	p.E299K	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647	80	0	0	47	29	38.16	-	-	-	A	58117788	G	A	58117788	3	1	240	1	0	0	0	0	1	0	0	0	18067	1291	45	2	905	2	ZNF530	19	58117788	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	289	58117788	1011195	3958	22808										
ZNF551	0	genome.wustl.edu	37	chr19	58199645	58199645	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcggagagttcacactgaaGaaaggccttaaatgtgaagg	12	6	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58199645	58199645	G	C	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.2002	p.E668Q	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	55	0	0	36	9	20	-	-	-	C	58199645	G	C	58199645	3	2	240	1	0	0	0	0	1	0	0	0	18079	943	33	2	1964	2	ZNF551	19	58199645	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	81857	58199645	929338	3959	22809										
ZNF587	0	genome.wustl.edu	37	chr19	58371049	58371049	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaggtacagatcccacctCactgaacaccagagacttca	6	13	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58371049	58371049	C	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	silent	c.1269	p.L423	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	132	0	0	79	61	43.57	-	-	-	T	58371049	C	T	58371049	2	4	240	1	0	0	0	0	0	0	0	1	18116	813	29	2		2	ZNF587	19	58371049	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	171404	58371049	757934	3960	22810										
ZNF606	0	genome.wustl.edu	37	chr19	58490439	58490439	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcacatttaaagggtttctCtccagtatgcattctcatat	5	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58490439	58490439	C	G	SNP	ZNF606	ENST00000341164	human	ensembl	69_37n	-1	known	missense	c.1609	p.E537Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704	79	0	0	56	19	25.33	-	-	-	G	58490439	C	G	58490439	3	3	240	1	0	0	0	0	1	0	0	0	18128	922	32	2	773	2	ZNF606	19	58490439	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	119390	58490439	638544	3961	22811										
ZNF135	0	genome.wustl.edu	37	chr19	58578511	58578511	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctacaaatgtcaggaatgcgGaaaggcctttagtcacagct	10	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58578511	58578511	G	T	SNP	ZNF135	ENST00000391699	human	ensembl	69_37n	1	putative	nonsense	c.712	p.E238*	0.924	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF135	HGNC	ENSG00000176293	58	0	0	36	7	16.28	-	-	-	T	58578511	G	T	58578511	4	4	240	1	0	0	0	0	0	1	0	0	17821	1174	41	2	862	2	ZNF135	19	58578511	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	88072	58578511	550472	3962	22812										
ZNF135	0	genome.wustl.edu	37	chr19	58579109	58579109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgagtgtgggaaagccttCagtcagagcacactcctgac	13	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58579109	58579109	C	T	SNP	ZNF135	ENST00000391699	human	ensembl	69_37n	1	putative	missense	c.1310	p.S437L	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF135	HGNC	ENSG00000176293	69	0	0	51	13	20.31	-	-	-	T	58579109	C	T	58579109	3	4	240	1	0	0	0	0	1	0	0	0	17821	825	29	2	1460	2	ZNF135	19	58579109	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	598	58579109	549874	3963	22813										
ZNF544	0	genome.wustl.edu	37	chr19	58772873	58772873	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaaaagtcagtatgagtgtGatgagtgcagggaaacctgt	15	4	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58772873	58772873	G	A	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.901	p.D301N	0.007	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	42	0	0	44	18	29.03	-	-	-	A	58772873	G	A	58772873	3	1	240	1	0	0	0	0	1	0	0	0	18073	1290	45	2	915	2	ZNF544	19	58772873	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	193764	58772873	356110	3964	22814										
ZNF8	0	genome.wustl.edu	37	chr19	58806254	58806254	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctccctggggcggcacaaGaggacacacactggggagaa	14	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58806254	58806254	G	C	SNP	ZNF8	ENST00000196548	human	ensembl	69_37n	1	known	missense	c.1080	p.K360N	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	HGNC	ENSG00000083842	28	0	0	28	14	33.33	-	-	-	C	58806254	G	C	58806254	3	2	240	1	0	0	0	0	1	0	0	0	18260	933	33	2	1094	2	ZNF8	19	58806254	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	33381	58806254	322729	3965	22815										
ZSCAN22	0	genome.wustl.edu	37	chr19	58850027	58850027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaagaggtcctccaagtgtCgcgagtgtaggaagatgttc	15	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58850027	58850027	C	T	SNP	ZSCAN22	ENST00000329665	human	ensembl	69_37n	1	known	missense	c.811	p.R271C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN22	HGNC	ENSG00000182318	46	0	0	42	9	17.65	-	-	-	T	58850027	C	T	58850027	3	4	240	1	0	0	0	0	1	0	0	0	18326	884	31	1	817	1	ZSCAN22	19	58850027	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	43773	58850027	278956	3966	22816										
ZNF132	0	genome.wustl.edu	37	chr19	58946561	58946561	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggatgggccccctcaccctCtactccatgccaagaacctg	9	17	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	58946561	58946561	C	G	SNP	ZNF132	ENST00000254166	human	ensembl	69_37n	-1	known	missense	c.250	p.E84Q	0.264	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849	19	0	0	14	8	36.36	-	-	-	G	58946561	C	G	58946561	3	3	240	1	0	0	0	0	1	0	0	0	17818	922	32	2	1874	2	ZNF132	19	58946561	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	96534	58946561	182422	3967	22817										
SLC27A5	0	genome.wustl.edu	37	chr19	59010588	59010588	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacgttctcgcccttccatCtgcaaggagggagccggcgc	12	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	59010588	59010588	C	G	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	splice_site	c.1668-1	e8-1	0.997	-	-	-	no_errors	SLC27A5	HGNC	ENSG00000083807	14	0	0	14	9	39.13	-	-	-	G	59010588	C	G	59010588	5	3	240	1	0	0	0	0	0	0	1	0	14618	927	32	2	417	2	SLC27A5	19	59010588	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64027	59010588	118395	3968	22818										
ZBTB45	0	genome.wustl.edu	37	chr19	59028713	59028713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgataactgtctgtatgcGaagcactgacgcggccgtga	13	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	19	59028713	59028713	G	A	SNP	ZBTB45	ENST00000354590	human	ensembl	69_37n	-1	known	missense	c.328	p.R110C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574	8	0	0	7	4	36.36	-	-	-	A	59028713	G	A	59028713	3	1	240	1	0	0	0	0	1	0	0	0	17642	1058	37	1	1215	1	ZBTB45	19	59028713	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18125	59028713	100270	3969	22819										
PSMF1	0	genome.wustl.edu	37	chr20	1108104	1108104	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagtggcagacttgaccctGaacttggatgattatatcga	10	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	1108104	1108104	G	A	SNP	PSMF1	ENST00000333082	human	ensembl	69_37n	1	known	silent	c.318	p.L106	1.000	pfam_Inhibitor_PI31	pfam_Inhibitor_PI31,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818	87	0	0	99	22	18.18	-	-	-	A	1108104	G	A	1108104	2	1	240	1	0	0	0	0	0	0	0	1	12790	1277	45	2		2	PSMF1	20	1108104	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09		1108104	61917416	3970	22820										
SNPH	0	genome.wustl.edu	37	chr20	1285648	1285648	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaaaggagatcaagcagctCaagcaggtcatcgacactgt	11	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	1285648	1285648	C	G	SNP	SNPH	ENST00000381867	human	ensembl	69_37n	1	known	silent	c.567	p.L189	1.000	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298	54	0	0	78	16	17.02	-	-	-	G	1285648	C	G	1285648	2	3	240	1	0	0	0	0	0	0	0	1	14939	813	29	2		2	SNPH	20	1285648	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	177544	1285648	61739872	3971	22821										
NSFL1C	0	genome.wustl.edu	37	chr20	1444998	1444998	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggctgtgcctctggacactGaactgggggttgcctgcgaa	16	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	1444998	1444998	G	A	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.179	p.S60L	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	70	0	0	74	17	18.68	-	-	-	A	1444998	G	A	1444998	3	1	240	1	0	0	0	0	1	0	0	0	10745	1294	45	2	965	2	NSFL1C	20	1444998	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	159350	1444998	61580522	3972	22822										
SIRPB1	0	genome.wustl.edu	37	chr20	1585668	1585668	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgctgaggtgtggccctCgccgcagggcccgataccac	15	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	1585668	1585668	C	T	SNP	SIRPB1	ENST00000279477	human	ensembl	69_37n	-1	known	silent	c.471	p.A157	0.026	pfam_CD80_C2-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	32	0	0	86	23	21.1	-	-	-	T	1585668	C	T	1585668	2	4	240	1	0	0	0	0	0	0	0	1	14422	871	31	1		1	SIRPB1	20	1585668	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	140670	1585668	61439852	3973	22823										
TMC2	0	genome.wustl.edu	37	chr20	2575596	2575596	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgtgttcggctacagcctGattattgtcattcgatcgta	10	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	2575596	2575596	G	C	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	silent	c.1059	p.L353	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	111	0	0	94	15	13.76	-	-	-	C	2575596	G	C	2575596	2	2	240	1	0	0	0	0	0	0	0	1	16080	1277	45	2		2	TMC2	20	2575596	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	989928	2575596	60449924	3974	22824										
TMC2	0	genome.wustl.edu	37	chr20	2621879	2621879	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggaccacactgcctgcctCtggacaccttcctatatctc	6	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	2621879	2621879	C	G	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.2603	p.S868C	0.020	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	24	0	0	57	11	16.18	-	-	-	G	2621879	C	G	2621879	3	3	240	1	0	0	0	0	1	0	0	0	16080	913	32	2	2681	2	TMC2	20	2621879	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46283	2621879	60403641	3975	22825										
NOP56	0	genome.wustl.edu	37	chr20	2637850	2637850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaaaacagcagtagtactCcagaggagtgtgaggtcagt	13	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	2637850	2637850	C	G	SNP	NOP56	ENST00000329276	human	ensembl	69_37n	1	known	missense	c.1405	p.P469A	0.000	NULL	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP56	HGNC	ENSG00000101361	48	0	0	61	13	17.57	-	-	-	G	2637850	C	G	2637850	3	3	240	1	0	0	0	0	1	0	0	0	10611	855	30	2	1447	2	NOP56	20	2637850	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	15971	2637850	60387670	3976	22826										
VPS16	0	genome.wustl.edu	37	chr20	2841666	2841666	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcttcctacagatggctgtCtccttcacctaccgacacct	6	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	2841666	2841666	C	G	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	silent	c.681	p.V227	0.997	pfam_Vps16_N,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	54	0	0	99	15	13.16	-	-	-	G	2841666	C	G	2841666	2	3	240	1	0	0	0	0	0	0	0	1	17290	900	32	2		2	VPS16	20	2841666	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	203816	2841666	60183854	3977	22827										
VPS16	0	genome.wustl.edu	37	chr20	2843950	2843950	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccaggctcgtgttgcggaGactttaccccctggccatcc	10	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	2843950	2843950	G	A	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	missense	c.1382	p.R461K	1.000	pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	57	0	0	98	12	10.91	-	-	-	A	2843950	G	A	2843950	3	1	240	1	0	0	0	0	1	0	0	0	17290	942	33	2	1440	2	VPS16	20	2843950	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2284	2843950	60181570	3978	22828										
PTPRA	0	genome.wustl.edu	37	chr20	3016453	3016453	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggagaataagagccggcaGatccggcagttccacttcca	11	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	3016453	3016453	G	T	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.2097	p.Q699H	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	65	0	0	73	10	12.05	-	-	-	T	3016453	G	T	3016453	3	4	240	1	0	0	0	0	1	0	0	0	12878	933	33	2	2138	2	PTPRA	20	3016453	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	172503	3016453	60009067	3979	22829										
SLC4A11	0	genome.wustl.edu	37	chr20	3215416	3215416	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggcctgcatctcaaggttGacattgacaaaaaaacggat	10	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	3215416	3215416	G	C	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	silent	c.342	p.V114	1.000	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	37	0	0	63	13	17.11	-	-	-	C	3215416	G	C	3215416	2	2	240	1	0	0	0	0	0	0	0	1	14741	1277	45	2		2	SLC4A11	20	3215416	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	198963	3215416	59810104	3980	22830										
ATRN	0	genome.wustl.edu	37	chr20	3619547	3619547	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgtcgccttggaaacagatGaggagcctcctgatcttatt	10	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	3619547	3619547	G	C	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.4015	p.E1339Q	1.000	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	150	0	0	136	22	13.92	-	-	-	C	3619547	G	C	3619547	3	2	240	1	0	0	0	0	1	0	0	0	1210	1291	45	2	4143	2	ATRN	20	3619547	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	404131	3619547	59405973	3981	22831										
HSPA12B	0	genome.wustl.edu	37	chr20	3731521	3731521	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagccatgaacgagctctttCagcccaccgtcagcgggatc	10	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	3731521	3731521	C	T	SNP	HSPA12B	ENST00000254963	human	ensembl	69_37n	1	known	nonsense	c.1372	p.Q458*	1.000	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622	76	0	0	72	43	37.39	-	-	-	T	3731521	C	T	3731521	4	4	240	1	0	0	0	0	0	1	0	0	7458	827	29	2	1414	2	HSPA12B	20	3731521	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	111974	3731521	59293999	3982	22832										
PRNP	0	genome.wustl.edu	37	chr20	4680571	4680571	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggatcgagcatggtcctcttCtcctctccacctgtgatcct	8	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	4680571	4680571	C	T	SNP	PRNP	ENST00000379440	human	ensembl	69_37n	1	known	silent	c.705	p.F235	1.000	pfam_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Prion_N_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	-	no_errors	PRNP	HGNC	ENSG00000171867	49	0	0	43	19	30.65	-	-	-	T	4680571	C	T	4680571	2	4	240	1	0	0	0	0	0	0	0	1	12625	912	32	2		2	PRNP	20	4680571	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	949050	4680571	58344949	3983	22833										
RASSF2	0	genome.wustl.edu	37	chr20	4768401	4768401	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccttcagcttctgtttctCtgcaaccacacacacccagg	7	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	4768401	4768401	C	G	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	splice_site	c.692-1	e8-1	1.000	-	-	-	no_errors	RASSF2	HGNC	ENSG00000101265	130	0	0	138	18	11.54	-	-	-	G	4768401	C	G	4768401	5	3	240	1	0	0	0	0	0	0	1	0	13169	927	32	2	301	2	RASSF2	20	4768401	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	87830	4768401	58257119	3984	22834										
SLC23A2	0	genome.wustl.edu	37	chr20	4839974	4839974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gataaaagccacacagccccCtacaaacatagcagttgtga	7	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	4839974	4839974	C	A	SNP	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	missense	c.1681	p.G561W	1.000	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	82	0	0	105	14	11.76	-	-	-	A	4839974	C	A	4839974	3	1	240	1	0	0	0	0	1	0	0	0	14552	681	24	4	279	4	SLC23A2	20	4839974	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71573	4839974	58185546	3985	22835										
SLC23A2	0	genome.wustl.edu	37	chr20	4848459	4848459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgttgggactggatgaagtaGagccattcccagtaccaaat	11	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	4848459	4848459	G	C	SNP	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	missense	c.1313	p.S438C	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	98	0	0	112	17	13.18	-	-	-	C	4848459	G	C	4848459	3	2	240	1	0	0	0	0	1	0	0	0	14552	942	33	2	659	2	SLC23A2	20	4848459	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	8485	4848459	58177061	3986	22836										
SLC23A2	0	genome.wustl.edu	37	chr20	4913169	4913169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctgttgaacttccagcctCcattgatttggatgtggtat	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	4913169	4913169	C	T	SNP	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	missense	c.40	p.E14K	1.000	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	155	0	0	192	38	16.52	-	-	-	T	4913169	C	T	4913169	3	4	240	1	0	0	0	0	1	0	0	0	14552	864	30	2	1972	2	SLC23A2	20	4913169	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	64710	4913169	58112351	3987	22837										
CHGB	0	genome.wustl.edu	37	chr20	5903796	5903796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caacccactacagggcttcaGaggaagaacctgaatatgga	10	10	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	5903796	5903796	G	A	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.1006	p.E336K	0.764	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	33	0	0	42	7	14.29	-	-	-	A	5903796	G	A	5903796	3	1	240	1	0	0	0	0	1	0	0	0	3368	943	33	2	1020	2	CHGB	20	5903796	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	990627	5903796	57121724	3988	22838										
LRRN4	0	genome.wustl.edu	37	chr20	6031627	6031627	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctctgatccaccctgactCaactgaaacacagaagggaa	8	12	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	6031627	6031627	C	G	SNP	LRRN4	ENST00000378858	human	ensembl	69_37n	-1	known	missense	c.658	p.E220Q	0.866	smart_Leu-rich_rpt_typical-subtyp	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872	61	0	0	89	29	24.58	-	-	-	G	6031627	C	G	6031627	3	3	240	1	0	0	0	0	1	0	0	0	9103	835	29	2	1576	2	LRRN4	20	6031627	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	127831	6031627	56993893	3989	22839										
FERMT1	0	genome.wustl.edu	37	chr20	6093209	6093209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatttttgtcttttttcttCttcttcttaaaatagtcacc	2	8	6	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	6093209	6093209	C	G	SNP	FERMT1	ENST00000217289	human	ensembl	69_37n	-1	known	missense	c.447	p.K149N	0.996	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT1	HGNC	ENSG00000101311	122	0	0	121	33	21.43	-	-	-	G	6093209	C	G	6093209	3	3	240	1	0	0	0	0	1	0	0	0	5863	912	32	2	1634	2	FERMT1	20	6093209	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	61582	6093209	56932311	3990	22840										
TMX4	0	genome.wustl.edu	37	chr20	7990954	7990954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctggcaggatggacaccatGgggcgtaactataagagaag	15	7	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	7990954	7990954	G	A	SNP	TMX4	ENST00000246024	human	ensembl	69_37n	-1	known	missense	c.185	p.P62L	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX4	HGNC	ENSG00000125827	104	0	0	149	29	16.29	-	-	-	A	7990954	G	A	7990954	3	1	240	1	0	0	0	0	1	0	0	0	16364	1348	47	4	892	4	TMX4	20	7990954	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1897745	7990954	55034566	3991	22841										
PLCB1	0	genome.wustl.edu	37	chr20	8703027	8703027	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatacggaaagtgacgacGacgatgatgatgatgactgt							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	8703027	8703027	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.1540	p.D514N	0.998	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	101	0	0	83	22	20.95	-	-	-	A	8703027	G	A	8703027	3	1	240	1	0	0	0	0	1	0	0	0	12101	1058	37	1	1598	1	PLCB1	20	8703027	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	712073	8703027	54322493	3992	22842	214	2								
PLCB1	0	genome.wustl.edu	37	chr20	8703030	8703030	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atacggaaagtgacgacgacGatgatgatgatgactgtaaa							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	8703030	8703030	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.1543	p.D515N	0.997	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	100	0	0	79	24	23.3	-	-	-	A	8703030	G	A	8703030	3	1	240	1	0	0	0	0	1	0	0	0	12101	1058	37	1	1601	1	PLCB1	20	8703030	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3	8703030	54322490	3993	22843	214	2								
PLCB1	0	genome.wustl.edu	37	chr20	8737717	8737717	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcctggagaaacaccatcaGaggctccaagtgaagcgaga	11	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	8737717	8737717	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.2548	p.E850K	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	52	0	0	45	12	21.05	-	-	-	A	8737717	G	A	8737717	3	1	240	1	0	0	0	0	1	0	0	0	12101	943	33	2	2642	2	PLCB1	20	8737717	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	34687	8737717	54287803	3994	22844										
PLCB4	0	genome.wustl.edu	37	chr20	9352991	9352991	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcattttcttatgaaaagttCtatgaactgacacaaaagat	6	6	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	9352991	9352991	C	G	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.627	p.F209L	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	74	0	0	93	24	20.51	-	-	-	G	9352991	C	G	9352991	3	3	240	1	0	0	0	0	1	0	0	0	12104	912	32	2	657	2	PLCB4	20	9352991	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	615274	9352991	53672529	3995	22845										
PLCB4	0	genome.wustl.edu	37	chr20	9400470	9400470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggtaccttctcaaaccaGatttcatgaggcggcctgat	9	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	9400470	9400470	G	C	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2032	p.D678H	1.000	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	96	0	0	145	24	14.2	-	-	-	C	9400470	G	C	9400470	3	2	240	1	0	0	0	0	1	0	0	0	12104	942	33	2	2158	2	PLCB4	20	9400470	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	47479	9400470	53625050	3996	22846										
ANKRD5	0	genome.wustl.edu	37	chr20	10019148	10019148	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atattgatatggtcagctttCtccttgaccttggtgctcac	8	10	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	10019148	10019148	C	T	SNP	ANKRD5	ENST00000378380	human	ensembl	69_37n	1	known	missense	c.199	p.L67F	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_HAND_2,prints_Ankyrin_rpt	-	no_errors	ANKRD5	HGNC	ENSG00000132623	68	0	0	87	22	20.18	-	-	-	T	10019148	C	T	10019148	3	4	240	1	0	0	0	0	1	0	0	0	675	913	32	2	201	2	ANKRD5	20	10019148	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	618678	10019148	53006372	3997	22847										
MKKS	0	genome.wustl.edu	37	chr20	10389304	10389304	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcccaggcagtgtcatttCtgttgcagagaagcaagctg	11	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	10389304	10389304	C	A	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	missense	c.1133	p.R378I	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	96	0	0	119	28	18.92	-	-	-	A	10389304	C	A	10389304	3	1	240	1	0	0	0	0	1	0	0	0	9671	913	32	2	591	2	MKKS	20	10389304	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	370156	10389304	52636216	3998	22848										
MKKS	0	genome.wustl.edu	37	chr20	10389392	10389392	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaattttgcagtgcacacatCtttcacacttccataactat	3	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	10389392	10389392	C	A	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	missense	c.1045	p.D349Y	0.996	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	101	0	0	126	34	21.25	-	-	-	A	10389392	C	A	10389392	3	1	240	1	0	0	0	0	1	0	0	0	9671	913	32	2	679	2	MKKS	20	10389392	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	88	10389392	52636128	3999	22849										
SPTLC3	0	genome.wustl.edu	37	chr20	13029656	13029656	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtttgaggaagcaccccttCatgttatggttttcacttac	8	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	13029656	13029656	C	T	SNP	SPTLC3	ENST00000399002	human	ensembl	69_37n	1	known	missense	c.181	p.H61Y	0.968	NULL	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC3	HGNC	ENSG00000172296	105	0	0	118	28	19.18	-	-	-	T	13029656	C	T	13029656	3	4	240	1	0	0	0	0	1	0	0	0	15216	826	29	2	187	2	SPTLC3	20	13029656	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2640264	13029656	49995864	4000	22850										
TASP1	0	genome.wustl.edu	37	chr20	13398117	13398117	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggctttcccatcctgggctGacatatatccgacacacatg	8	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	13398117	13398117	G	C	SNP	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	nonsense	c.1148	p.S383*	1.000	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	192	0	0	231	39	14.44	-	-	-	C	13398117	G	C	13398117	4	2	240	1	0	0	0	0	0	1	0	0	15681	1294	45	2	122	2	TASP1	20	13398117	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	368461	13398117	49627403	4001	22851										
MACROD2	0	genome.wustl.edu	37	chr20	16030489	16030489	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcagcaggggcacaagatGaagcgaaggaacaaagaaat	12	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	16030489	16030489	G	T	SNP	MACROD2	ENST00000310348	human	ensembl	69_37n	1	known	nonsense	c.1315	p.E439*	1.000	NULL	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD2	HGNC	ENSG00000172264	66	0	0	63	17	21.25	-	-	-	T	16030489	G	T	16030489	4	4	240	1	0	0	0	0	0	1	0	0	9213	1291	45	2	1385	2	MACROD2	20	16030489	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2632372	16030489	46995031	4002	22852										
KIF16B	0	genome.wustl.edu	37	chr20	16351251	16351251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatattttagtttacgttGaatggtgccattgtgaagtt	9	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	16351251	16351251	G	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.3478	p.Q1160E	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	178	0	0	140	67	32.06	-	-	-	C	16351251	G	C	16351251	3	2	240	1	0	0	0	0	1	0	0	0	8330	1299	45	2	495	2	KIF16B	20	16351251	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	320762	16351251	46674269	4003	22853										
SNRPB2	0	genome.wustl.edu	37	chr20	16721632	16721632	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtcccatgctatgaagatCacctatgccaagaaataaca	6	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	16721632	16721632	C	T	SNP	SNRPB2	ENST00000246071	human	ensembl	69_37n	1	known	silent	c.660	p.I220	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPB2	HGNC	ENSG00000125870	74	0	0	87	12	12.12	-	-	-	T	16721632	C	T	16721632	2	4	240	1	0	0	0	0	0	0	0	1	14951	816	29	2		2	SNRPB2	20	16721632	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	370381	16721632	46303888	4004	22854										
BFSP1	0	genome.wustl.edu	37	chr20	17495393	17495393	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctgtcctttgccgcactGatatcatcttgcagaaattg	8	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	17495393	17495393	G	A	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	silent	c.507	p.I169	0.998	pfam_F	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	105	0	0	162	30	15.62	-	-	-	A	17495393	G	A	17495393	2	1	240	1	0	0	0	0	0	0	0	1	1420	1280	45	2		2	BFSP1	20	17495393	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	773761	17495393	45530127	4005	22855										
RRBP1	0	genome.wustl.edu	37	chr20	17640694	17640694	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggaattcactacagagctGacagctggttccacttttgc	9	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	17640694	17640694	G	C	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	silent	c.459	p.V153	0.998	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	150	0	0	185	30	13.95	-	-	-	C	17640694	G	C	17640694	2	2	240	1	0	0	0	0	0	0	0	1	13764	1277	45	2		2	RRBP1	20	17640694	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145301	17640694	45384826	4006	22856										
CSRP2BP	0	genome.wustl.edu	37	chr20	18143130	18143130	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttggggtcagaaagaaggtCagaggccctgaacagataaa	14	6	2	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18143130	18143130	C	T	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	silent	c.1212	p.V404	0.115	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	80	0	0	101	27	21.09	-	-	-	T	18143130	C	T	18143130	2	4	240	1	0	0	0	0	0	0	0	1	4000	813	29	2		2	CSRP2BP	20	18143130	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	502436	18143130	44882390	4007	22857										
CSRP2BP	0	genome.wustl.edu	37	chr20	18143374	18143374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggtgctgttgccatgactCcggaagctcggagactgaaa	13	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18143374	18143374	C	T	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.1456	p.P486S	0.995	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	49	0	0	67	20	22.99	-	-	-	T	18143374	C	T	18143374	3	4	240	1	0	0	0	0	1	0	0	0	4000	855	30	2	1478	2	CSRP2BP	20	18143374	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	244	18143374	44882146	4008	22858										
CSRP2BP	0	genome.wustl.edu	37	chr20	18165353	18165353	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcctgatgtgaaatacaatGaagcttacatttcatttctg	6	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18165353	18165353	G	A	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.2092	p.E698K	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	144	0	0	209	49	18.92	-	-	-	A	18165353	G	A	18165353	3	1	240	1	0	0	0	0	1	0	0	0	4000	1291	45	2	2126	2	CSRP2BP	20	18165353	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	21979	18165353	44860167	4009	22859										
CSRP2BP	0	genome.wustl.edu	37	chr20	18168007	18168007	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtaccagaagtttggattCaagactgaagaatatgtatt	9	5	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18168007	18168007	C	G	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.2253	p.F751L	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	69	0	0	115	26	18.44	-	-	-	G	18168007	C	G	18168007	3	3	240	1	0	0	0	0	1	0	0	0	4000	825	29	2	2291	2	CSRP2BP	20	18168007	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2654	18168007	44857513	4010	22860										
ZNF133	0	genome.wustl.edu	37	chr20	18296107	18296107	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaacagacaaattgttgaaGaggatagaagtcttaggatt	11	3	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18296107	18296107	G	T	SNP	ZNF133	ENST00000396026	human	ensembl	69_37n	1	known	missense	c.621	p.K207N	0.925	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	25	0	0	11	15	57.69	-	-	-	T	18296107	G	T	18296107	3	4	240	1	0	0	0	0	1	0	0	0	17819	933	33	2	619	2	ZNF133	20	18296107	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	128100	18296107	44729413	4011	22861										
ZNF133	0	genome.wustl.edu	37	chr20	18297346	18297346	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgggcggggcttcagcctCaagtctcacctcagcagaca	12	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	18297346	18297346	C	G	SNP	ZNF133	ENST00000396026	human	ensembl	69_37n	1	known	silent	c.1860	p.L620	0.099	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	12	0	0	33	8	19.05	-	-	-	G	18297346	C	G	18297346	2	3	240	1	0	0	0	0	0	0	0	1	17819	813	29	2		2	ZNF133	20	18297346	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1239	18297346	44728174	4012	22862										
NKX2-2	0	genome.wustl.edu	37	chr20	21492953	21492953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctgccgaaagcgccgctCcagctcgtaggtctgcgcct	12	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	21492953	21492953	C	T	SNP	NKX2-2	ENST00000377142	human	ensembl	69_37n	-1	known	missense	c.430	p.E144K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820	44	0	0	35	7	16.67	-	-	-	T	21492953	C	T	21492953	3	4	240	1	0	0	0	0	1	0	0	0	10522	864	30	2	395	2	NKX2-2	20	21492953	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3195607	21492953	41532567	4013	22863										
GZF1	0	genome.wustl.edu	37	chr20	23350824	23350824	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agactgaacagcctgacgaaGagtatgtgtcatccaagctt	10	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	23350824	23350824	G	C	SNP	GZF1	ENST00000338121	human	ensembl	69_37n	1	known	missense	c.1882	p.E628Q	0.981	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	55	0	0	74	16	17.78	-	-	-	C	23350824	G	C	23350824	3	2	240	1	0	0	0	0	1	0	0	0	6965	943	33	2	1900	2	GZF1	20	23350824	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1857871	23350824	39674696	4014	22864										
ABHD12	0	genome.wustl.edu	37	chr20	25295604	25295604	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtaaccaagggaactcagCacctgtaaagtgaaaaataa	9	7	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	25295604	25295604	C	T	SNP	ABHD12	ENST00000376542	human	ensembl	69_37n	-1	known	silent	c.576	p.V192	0.985	pfam_AB_hydrolase_3	pfam_AB_hydrolase_1,pfam_AB_hydrolase_3	-	no_errors	ABHD12	HGNC	ENSG00000100997	90	0	0	100	16	13.79	-	-	-	T	25295604	C	T	25295604	2	4	240	1	0	0	0	0	0	0	0	1	76	697	25	4		4	ABHD12	20	25295604	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1944780	25295604	37729916	4015	22865										
NANP	0	genome.wustl.edu	37	chr20	25597039	25597039	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacattcttcagccaattttCtattggctgcaccacctttt	4	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	25597039	25597039	C	G	SNP	NANP	ENST00000304788	human	ensembl	69_37n	-1	known	missense	c.269	p.R90T	0.928	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA_CTE7	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_hydro_IA_CTE7,tigrfam_HAD-SF_hydro_IA_v1	-	no_errors	NANP	HGNC	ENSG00000170191	68	0	0	86	27	23.89	-	-	-	G	25597039	C	G	25597039	3	3	240	1	0	0	0	0	1	0	0	0	10226	913	32	2	481	2	NANP	20	25597039	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	301435	25597039	37428481	4016	22866										
BCL2L1	0	genome.wustl.edu	37	chr20	30309730	30309730	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcccgccggtaccgcagttCaaactcgtcgcctgcctccc	9	19	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30309730	30309730	C	T	SNP	BCL2L1	ENST00000307677	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,tigrfam_Bcl2_reg	pfam_Bcl2_BH,pfam_Bcl2_BH4,smart_Bcl2_BH4,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,pfscan_Bcl2_BH4,prints_Apop_reg_BclX,prints_Bcl2_BH,tigrfam_Bcl2_reg	-	no_errors	BCL2L1	HGNC	ENSG00000171552	82	0	0	94	13	12.15	-	-	-	T	30309730	C	T	30309730	3	4	240	1	0	0	0	0	1	0	0	0	1371	835	29	2	417	2	BCL2L1	20	30309730	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4712691	30309730	32715790	4017	22867										
TPX2	0	genome.wustl.edu	37	chr20	30370073	30370073	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgttaccctccaaatcttCtgtgaccaagatttgcagag	7	12	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30370073	30370073	C	T	SNP	TPX2	ENST00000340513	human	ensembl	69_37n	1	known	missense	c.1184	p.S395F	0.064	NULL	pfam_TPX2_importin,pfam_Aurora-A-bd,pfam_Xklp2_targeting_prot	-	no_errors	TPX2	HGNC	ENSG00000088325	68	0	0	68	14	17.07	-	-	-	T	30370073	C	T	30370073	3	4	240	1	0	0	0	0	1	0	0	0	16528	913	32	2	1110	2	TPX2	20	30370073	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	60343	30370073	32655447	4018	22868										
MYLK2	0	genome.wustl.edu	37	chr20	30414464	30414464	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaaccaccgcaatctgatCcagctgtatgcagccatcga	8	14	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30414464	30414464	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	silent	c.1029	p.I343	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	80	0	0	97	23	19.17	-	-	-	T	30414464	C	T	30414464	2	4	240	1	0	0	0	0	0	0	0	1	10129	845	30	2		2	MYLK2	20	30414464	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44391	30414464	32611056	4019	22869										
TTLL9	0	genome.wustl.edu	37	chr20	30496503	30496503	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcacttccggaaccactatGaggtgagctgggcaggcggg	16	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30496503	30496503	G	C	SNP	TTLL9	ENST00000375938	human	ensembl	69_37n	1	known	missense	c.316	p.E106Q	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL9	HGNC	ENSG00000131044	48	0	0	46	10	17.86	-	-	-	C	30496503	G	C	30496503	3	2	240	1	0	0	0	0	1	0	0	0	16831	1291	45	2	330	2	TTLL9	20	30496503	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82039	30496503	32529017	4020	22870										
C20orf160	0	genome.wustl.edu	37	chr20	30598284	30598284	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgaagtcaagaaagggaaGaaggtaggtgggaggttggg	19	1	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30598284	30598284	G	A	SNP	C20orf160	ENST00000300415	human	ensembl	69_37n	1	known	silent	c.27	p.K9	1.000	NULL	NULL	-	no_errors	C20orf160	HGNC	ENSG00000101331	86	0	0	107	14	11.57	-	-	-	A	30598284	G	A	30598284	2	1	240	1	0	0	0	0	0	0	0	1	2113	933	33	2		2	C20orf160	20	30598284	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	101781	30598284	32427236	4021	22871										
TM9SF4	0	genome.wustl.edu	37	chr20	30746280	30746280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catggctgggatcttgccctTcggcgccatgttcatcgagc	12	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30746280	30746280	T	C	SNP	TM9SF4	ENST00000398022	human	ensembl	69_37n	1	known	missense	c.1532	p.F511S	0.999	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337	136	0	0	77	120	60.91	-	-	-	C	30746280	T	C	30746280	3	2	240	1	0	0	0	0	1	0	0	0	16075	1783	62	5	1590	5	TM9SF4	20	30746280	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	147996	30746280	32279240	4022	22872										
POFUT1	0	genome.wustl.edu	37	chr20	30795824	30795824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctcccggggatgcctgcggGctcctgggacccggccggtt	17	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	30795824	30795824	G	A	SNP	POFUT1	ENST00000375749	human	ensembl	69_37n	1	known	missense	c.80	p.G27D	0.045	NULL	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346	12	0	0	8	4	33.33	-	-	-	A	30795824	G	A	30795824	3	1	240	1	0	0	0	0	1	0	0	0	12257	1203	42	4	82	4	POFUT1	20	30795824	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	49544	30795824	32229696	4023	22873										
MAPRE1	0	genome.wustl.edu	37	chr20	31421537	31421537	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcaggggctgcgtattgtCagtttatggacatgctgttc	12	7	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	31421537	31421537	C	T	SNP	MAPRE1	ENST00000375571	human	ensembl	69_37n	1	known	nonsense	c.136	p.Q46*	1.000	pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE1	HGNC	ENSG00000101367	193	0	0	237	34	12.55	-	-	-	T	31421537	C	T	31421537	4	4	240	1	0	0	0	0	0	1	0	0	9365	827	29	2	142	2	MAPRE1	20	31421537	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	625713	31421537	31603983	4024	22874										
SUN5	0	genome.wustl.edu	37	chr20	31573676	31573676	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacctggccgcggtcaccctCaaaggcccagcaattgccag	10	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	31573676	31573676	C	T	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	missense	c.763	p.E255K	0.488	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	86	0	0	109	20	15.5	-	-	-	T	31573676	C	T	31573676	3	4	240	1	0	0	0	0	1	0	0	0	15485	835	29	2	388	2	SUN5	20	31573676	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	152139	31573676	31451844	4025	22875										
SUN5	0	genome.wustl.edu	37	chr20	31577481	31577481	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taatctccgtgtatcatcttCattattttctgggccatttt	5	9	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	31577481	31577481	C	T	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	missense	c.558	p.M186I	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	107	0	0	160	21	11.6	-	-	-	T	31577481	C	T	31577481	3	4	240	1	0	0	0	0	1	0	0	0	15485	826	29	2	601	2	SUN5	20	31577481	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3805	31577481	31448039	4026	22876										
ZNF341	0	genome.wustl.edu	37	chr20	32358036	32358036	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgctgtacgacctgggcgtGcaccagtactcccacagcct	10	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	32358036	32358036	G	A	SNP	ZNF341	ENST00000375200	human	ensembl	69_37n	1	known	silent	c.1560	p.V520	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061	46	0	0	56	13	18.57	-	-	-	A	32358036	G	A	32358036	2	1	240	1	0	0	0	0	0	0	0	1	17953	1306	46	4		4	ZNF341	20	32358036	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	780555	32358036	30667484	4027	22877										
ITCH	0	genome.wustl.edu	37	chr20	33026307	33026307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaatggatcagatgaccctGaagatgcaggagctggtgaa	13	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33026307	33026307	G	A	SNP	ITCH	ENST00000262650	human	ensembl	69_37n	1	known	missense	c.673	p.E225K	0.994	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	ITCH	HGNC	ENSG00000078747	106	0	0	173	29	14.36	-	-	-	A	33026307	G	A	33026307	3	1	240	1	0	0	0	0	1	0	0	0	7922	1291	45	2	572	2	ITCH	20	33026307	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	668271	33026307	29999213	4028	22878										
NCOA6	0	genome.wustl.edu	37	chr20	33345516	33345516	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggccgggcaagggagccttCttccacccttggtttgcagt	14	12	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33345516	33345516	C	T	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	silent	c.1035	p.K345	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	105	0	0	143	28	16.37	-	-	-	T	33345516	C	T	33345516	2	4	240	1	0	0	0	0	0	0	0	1	10305	912	32	2		2	NCOA6	20	33345516	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	319209	33345516	29680004	4029	22879										
ACSS2	0	genome.wustl.edu	37	chr20	33509628	33509628	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tagctcctgcaatcctgaatGagtccggggaagagttggaa	13	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33509628	33509628	G	C	SNP	ACSS2	ENST00000360596	human	ensembl	69_37n	1	known	missense	c.1507	p.E503Q	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	181	1	0.55	247	49	16.55	-	-	-	C	33509628	G	C	33509628	3	2	240	1	0	0	0	0	1	0	0	0	189	1291	45	2	1600	2	ACSS2	20	33509628	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	164112	33509628	29515892	4030	22880										
GSS	0	genome.wustl.edu	37	chr20	33529601	33529601	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agagaggatcttgccagcttCtttggtcttactcaggacac	10	10	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33529601	33529601	C	G	SNP	GSS	ENST00000216951	human	ensembl	69_37n	-1	known	missense	c.523	p.E175Q	1.000	pfam_Glutathione_synthase_euk,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_fold,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	-	no_errors	GSS	HGNC	ENSG00000100983	77	0	0	100	24	19.35	-	-	-	G	33529601	C	G	33529601	3	3	240	1	0	0	0	0	1	0	0	0	6880	922	32	2	933	2	GSS	20	33529601	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19973	33529601	29495919	4031	22881										
MYH7B	0	genome.wustl.edu	37	chr20	33584527	33584527	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtcggtggctgatgctgctCaagacaagcagcagctggag	15	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33584527	33584527	C	G	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.3358	p.Q1120E	0.997	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	24	0	0	29	8	21.62	-	-	-	G	33584527	C	G	33584527	3	3	240	1	0	0	0	0	1	0	0	0	10112	827	29	2	3468	2	MYH7B	20	33584527	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54926	33584527	29440993	4032	22882										
MYH7B	0	genome.wustl.edu	37	chr20	33587190	33587190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccctggagacgctcaagcggGagaacaagaacctgcagggt	14	11	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33587190	33587190	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.4648	p.E1550K	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	31	0	0	40	17	29.82	-	-	-	A	33587190	G	A	33587190	3	1	240	1	0	0	0	0	1	0	0	0	10112	1175	41	2	4782	2	MYH7B	20	33587190	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2663	33587190	29438330	4033	22883										
PROCR	0	genome.wustl.edu	37	chr20	33759963	33759963	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcctcaacttcaggatgttGacaacattgctgccgatact	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33759963	33759963	G	T	SNP	PROCR	ENST00000216968	human	ensembl	69_37n	1	known	missense	c.6	p.L2F	0.986	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000	70	0	0	65	16	19.75	-	-	-	T	33759963	G	T	33759963	3	4	240	1	0	0	0	0	1	0	0	0	12628	1281	45	2	8	2	PROCR	20	33759963	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	172773	33759963	29265557	4034	22884										
MMP24	0	genome.wustl.edu	37	chr20	33842446	33842446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atggcgacagctccccatttGatggagaagggggattcctg	14	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33842446	33842446	G	C	SNP	MMP24	ENST00000246186	human	ensembl	69_37n	1	known	missense	c.706	p.D236H	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP24	HGNC	ENSG00000125966	87	0	0	129	17	11.64	-	-	-	C	33842446	G	C	33842446	3	2	240	1	0	0	0	0	1	0	0	0	9733	1290	45	2	470	2	MMP24	20	33842446	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	82483	33842446	29183074	4035	22885										
UQCC	0	genome.wustl.edu	37	chr20	33935018	33935018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccacataaaatgaactatGatacgacacatgtacttccc	4	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	33935018	33935018	G	C	SNP	UQCC	ENST00000374385	human	ensembl	69_37n	-1	known	missense	c.522	p.I174M	1.000	pfam_Ubiq_cyt_c_chap/UPF0174	pfam_Ubiq_cyt_c_chap/UPF0174	-	no_errors	UQCC	HGNC	ENSG00000101019	152	0	0	154	46	23	-	-	-	C	33935018	G	C	33935018	3	2	240	1	0	0	0	0	1	0	0	0	17112	1280	45	2	393	2	UQCC	20	33935018	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	92572	33935018	29090502	4036	22886										
CEP250	0	genome.wustl.edu	37	chr20	34090500	34090500	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaccctagctgaaagagaaGaggaggtggagactctgcgg	16	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	34090500	34090500	G	C	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.4303	p.E1435Q	0.001	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	23	0	0	50	10	16.67	-	-	-	C	34090500	G	C	34090500	3	2	240	1	0	0	0	0	1	0	0	0	3281	943	33	2	4409	2	CEP250	20	34090500	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	155482	34090500	28935020	4037	22887										
SPAG4	0	genome.wustl.edu	37	chr20	34206844	34206844	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcgccctccctccttgcaGagagtggccaagctcgtgtt	10	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	34206844	34206844	G	C	SNP	SPAG4	ENST00000374273	human	ensembl	69_37n	1	known	splice_site	c.718-1	e8-1	1.000	-	-	-	no_errors	SPAG4	HGNC	ENSG00000061656	83	0	0	105	28	21.05	-	-	-	C	34206844	G	C	34206844	5	2	240	1	0	0	0	0	0	0	1	0	15071	956	33	2	747	2	SPAG4	20	34206844	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	116344	34206844	28818676	4038	22888										
SPAG4	0	genome.wustl.edu	37	chr20	34207631	34207631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccagcgtggagcacaccgGaggagccaacagcgcccccc	13	18	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	34207631	34207631	G	A	SNP	SPAG4	ENST00000374273	human	ensembl	69_37n	1	known	missense	c.1040	p.G347E	0.343	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SPAG4	HGNC	ENSG00000061656	26	0	0	24	9	27.27	-	-	-	A	34207631	G	A	34207631	3	1	240	1	0	0	0	0	1	0	0	0	15071	1174	41	2	1078	2	SPAG4	20	34207631	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	787	34207631	28817889	4039	22889										
PHF20	0	genome.wustl.edu	37	chr20	34459740	34459740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtggaattacaagagatttCgactgtggaaggttcatatt	11	4	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	34459740	34459740	C	T	SNP	PHF20	ENST00000374012	human	ensembl	69_37n	1	known	missense	c.1271	p.S424L	0.982	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	67	0	0	68	14	17.07	-	-	-	T	34459740	C	T	34459740	3	4	240	1	0	0	0	0	1	0	0	0	11905	893	31	1	1301	1	PHF20	20	34459740	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	252109	34459740	28565780	4040	22890										
NDRG3	0	genome.wustl.edu	37	chr20	35284791	35284791	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	attccctgcaaaaagtacttGaaggcctcggtgagcttccc	9	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	35284791	35284791	G	A	SNP	NDRG3	ENST00000349004	human	ensembl	69_37n	-1	known	silent	c.918	p.F306	1.000	pfam_Ndr	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079	75	0	0	104	18	14.75	-	-	-	A	35284791	G	A	35284791	2	1	240	1	0	0	0	0	0	0	0	1	10325	1281	45	2		2	NDRG3	20	35284791	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	825051	35284791	27740729	4041	22891										
NDRG3	0	genome.wustl.edu	37	chr20	35310952	35310952	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaggatgtaagctccagctCcaactccaattccaatgatg	8	11	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	35310952	35310952	C	G	SNP	NDRG3	ENST00000349004	human	ensembl	69_37n	-1	known	missense	c.413	p.G138A	1.000	pfam_Ndr,pfam_AB_hydrolase_1	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079	105	0	0	113	23	16.91	-	-	-	G	35310952	C	G	35310952	3	3	240	1	0	0	0	0	1	0	0	0	10325	855	30	2	754	2	NDRG3	20	35310952	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26161	35310952	27714568	4042	22892										
RBL1	0	genome.wustl.edu	37	chr20	35695166	35695166	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaatatatggcttaaagtaGtgctcctttattccttttgc	7	7	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	35695166	35695166	G	C	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.807	p.H269Q	0.998	NULL	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	134	0	0	148	24	13.95	-	-	-	C	35695166	G	C	35695166	3	2	240	1	0	0	0	0	1	0	0	0	13192	1020	36	4	2476	4	RBL1	20	35695166	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	384214	35695166	27330354	4043	22893										
C20orf132	0	genome.wustl.edu	37	chr20	35743692	35743692	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgatcttctcatcggtttCacgcaagctgtctacaatgt	7	11	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	35743692	35743692	C	T	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.2419	p.E807K	0.108	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	98	0	0	149	24	13.87	-	-	-	T	35743692	C	T	35743692	3	4	240	1	0	0	0	0	1	0	0	0	2106	835	29	2	733	2	C20orf132	20	35743692	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	48526	35743692	27281828	4044	22894										
GHRH	0	genome.wustl.edu	37	chr20	35884893	35884893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaagatggcatctgcatacCgccgcatcctgtgcggaagg	13	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	35884893	35884893	C	T	SNP	GHRH	ENST00000237527	human	ensembl	69_37n	-1	known	missense	c.92	p.R31Q	0.103	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	GHRH	HGNC	ENSG00000118702	35	0	0	45	12	21.05	-	-	-	T	35884893	C	T	35884893	3	4	240	1	0	0	0	0	1	0	0	0	6424	652	23	1	246	1	GHRH	20	35884893	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	141201	35884893	27140627	4045	22895										
SRC	0	genome.wustl.edu	37	chr20	36024662	36024662	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacagcggcggcttctacatCacctcccgcacccagttcaa	8	17	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	36024662	36024662	C	T	SNP	SRC	ENST00000360723	human	ensembl	69_37n	1	known	silent	c.669	p.I223	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	SRC	HGNC	ENSG00000197122	34	0	0	14	11	44	-	-	-	T	36024662	C	T	36024662	2	4	240	1	0	0	0	0	0	0	0	1	15225	816	29	2		2	SRC	20	36024662	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	139769	36024662	27000858	4046	22896										
RPRD1B	0	genome.wustl.edu	37	chr20	36676792	36676792	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaacctttagaaagattgctGaacatctggcaagaacgaag	9	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	36676792	36676792	G	C	SNP	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	silent	c.324	p.L108	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	77	0	0	80	16	16.67	-	-	-	C	36676792	G	C	36676792	2	2	240	1	0	0	0	0	0	0	0	1	13702	1277	45	2		2	RPRD1B	20	36676792	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	652130	36676792	26348728	4047	22897										
TGM2	0	genome.wustl.edu	37	chr20	36760783	36760783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccaggtagaggtccctctCagccagcaggtagctgttga	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	36760783	36760783	C	G	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	missense	c.1735	p.E579Q	0.804	superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	58	0	0	64	15	18.99	-	-	-	G	36760783	C	G	36760783	3	3	240	1	0	0	0	0	1	0	0	0	15925	835	29	2	340	2	TGM2	20	36760783	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83991	36760783	26264737	4048	22898										
TGM2	0	genome.wustl.edu	37	chr20	36770540	36770540	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgatgagaaggttgctgttCtggtcatgggccgagttgta	15	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	36770540	36770540	C	T	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	silent	c.921	p.Q307	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	157	0	0	201	47	18.95	-	-	-	T	36770540	C	T	36770540	2	4	240	1	0	0	0	0	0	0	0	1	15925	912	32	2		2	TGM2	20	36770540	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9757	36770540	26254980	4049	22899										
TGM2	0	genome.wustl.edu	37	chr20	36789841	36789841	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccggtcacgacactgaaggtGagactgtctacactggcctc	11	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	36789841	36789841	G	A	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	silent	c.171	p.L57	0.906	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	36	0	0	42	6	12.5	-	-	-	A	36789841	G	A	36789841	2	1	240	1	0	0	0	0	0	0	0	1	15925	1277	45	2		2	TGM2	20	36789841	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	19301	36789841	26235679	4050	22900										
RALGAPB	0	genome.wustl.edu	37	chr20	37117154	37117154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgtgctgcacagctatccaGagagcgttggacgagaggtg	16	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	37117154	37117154	G	C	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.79	p.E27Q	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	151	1	0.66	97	116	54.46	-	-	-	C	37117154	G	C	37117154	3	2	240	1	0	0	0	0	1	0	0	0	13098	943	33	2	81	2	RALGAPB	20	37117154	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	327313	37117154	25908366	4051	22901										
RALGAPB	0	genome.wustl.edu	37	chr20	37154615	37154615	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttttctgtccctgaagttGagacttgtgaatatattaat	7	6	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	37154615	37154615	G	C	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.1980	p.L660F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	81	0	0	89	21	19.09	-	-	-	C	37154615	G	C	37154615	3	2	240	1	0	0	0	0	1	0	0	0	13098	1281	45	2	2026	2	RALGAPB	20	37154615	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	37461	37154615	25870905	4052	22902										
DHX35	0	genome.wustl.edu	37	chr20	37630471	37630471	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaacatttccggtggatatCttttatctacaaaggtttga	8	6	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	37630471	37630471	C	G	SNP	DHX35	ENST00000252011	human	ensembl	69_37n	1	known	missense	c.741	p.I247M	1.000	smart_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452	169	0	0	207	31	13.03	-	-	-	G	37630471	C	G	37630471	3	3	240	1	0	0	0	0	1	0	0	0	4544	903	32	2	775	2	DHX35	20	37630471	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	475856	37630471	25395049	4053	22903										
TOP1	0	genome.wustl.edu	37	chr20	39704876	39704876	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaacacaaagatggaagctCagaaaagcataaagacaaac	7	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	39704876	39704876	C	G	SNP	TOP1	ENST00000361337	human	ensembl	69_37n	1	known	nonsense	c.221	p.S74*	1.000	NULL	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900	128	0	0	152	30	16.48	-	-	-	G	39704876	C	G	39704876	4	3	240	1	0	0	0	0	0	1	0	0	16459	838	29	2	235	2	TOP1	20	39704876	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2074405	39704876	23320644	4054	22904										
PLCG1	0	genome.wustl.edu	37	chr20	39798809	39798809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttctccatcagcatggcgtCggtggcccactggtccctgg	12	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	39798809	39798809	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.2708	p.S903L	0.156	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_Pleckstrin_homology,pirsf_PLC-gamma,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	69	0	0	58	13	18.06	-	-	-	T	39798809	C	T	39798809	3	4	240	1	0	0	0	0	1	0	0	0	12109	893	31	1	2802	1	PLCG1	20	39798809	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	93933	39798809	23226711	4055	22905										
PLCG1	0	genome.wustl.edu	37	chr20	39800883	39800883	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaagattgccctggagctCtctgaacttgtcgtctactg	10	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	39800883	39800883	C	G	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	silent	c.2859	p.L953	0.900	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pirsf_PLC-gamma,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	54	0	0	81	11	11.96	-	-	-	G	39800883	C	G	39800883	2	3	240	1	0	0	0	0	0	0	0	1	12109	900	32	2		2	PLCG1	20	39800883	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2074	39800883	23224637	4056	22906										
ZHX3	0	genome.wustl.edu	37	chr20	39832166	39832166	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcacagctgacgttgtatttGaacacacagtgttaatgggt	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	39832166	39832166	G	C	SNP	ZHX3	ENST00000373263	human	ensembl	69_37n	-1	known	nonsense	c.1391	p.S464*	0.984	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ZHX3	HGNC	ENSG00000174306	55	0	0	83	12	12.63	-	-	-	C	39832166	G	C	39832166	4	2	240	1	0	0	0	0	0	1	0	0	17773	1294	45	2	1487	2	ZHX3	20	39832166	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	31283	39832166	23193354	4057	22907										
CHD6	0	genome.wustl.edu	37	chr20	40122518	40122518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccctgtttctgcatcctTggtgtgggccacctccaaga	9	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	40122518	40122518	T	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.1159	p.K387E	1.000	pfam_Chromo_domain,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	54	0	0	62	9	12.68	-	-	-	C	40122518	T	C	40122518	3	2	240	1	0	0	0	0	1	0	0	0	3358	1821	63	5	7104	5	CHD6	20	40122518	Missense_Mutation	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	290352	40122518	22903002	4058	22908										
PTPRT	0	genome.wustl.edu	37	chr20	40747129	40747129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaaaagtcctttacagtctCctgcatcggacctgccaaca	6	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	40747129	40747129	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.2962	p.E988K	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	64	0	0	77	14	15.38	-	-	-	T	40747129	C	T	40747129	3	4	240	1	0	0	0	0	1	0	0	0	12895	864	30	2	1473	2	PTPRT	20	40747129	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	624611	40747129	22278391	4059	22909										
GTSF1L	0	genome.wustl.edu	37	chr20	42355074	42355074	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgctgggtgtcatcgttCtgctctgaactaggaggact	12	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	42355074	42355074	C	T	SNP	GTSF1L	ENST00000373003	human	ensembl	69_37n	-1	known	silent	c.261	p.Q87	0.001	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	GTSF1L	HGNC	ENSG00000124196	107	0	0	135	32	19.05	-	-	-	T	42355074	C	T	42355074	2	4	240	1	0	0	0	0	0	0	0	1	6938	912	32	2		2	GTSF1L	20	42355074	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1607945	42355074	20670446	4060	22910										
TOX2	0	genome.wustl.edu	37	chr20	42695386	42695386	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtaggacttcccgcacatctCtgagttccccagcagctcgg	10	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	42695386	42695386	C	G	SNP	TOX2	ENST00000341197	human	ensembl	69_37n	1	known	missense	c.1373	p.S458C	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX2	HGNC	ENSG00000124191	78	0	0	110	19	14.73	-	-	-	G	42695386	C	G	42695386	3	3	240	1	0	0	0	0	1	0	0	0	16474	913	32	2	1533	2	TOX2	20	42695386	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	340312	42695386	20330134	4061	22911										
SERINC3	0	genome.wustl.edu	37	chr20	43138622	43138622	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atctaccagcagcaccagctGaatgaggatgaagagggcgg	14	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	43138622	43138622	G	A	SNP	SERINC3	ENST00000255175	human	ensembl	69_37n	-1	known	nonsense	c.523	p.Q175*	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824	76	0	0	100	31	23.66	-	-	-	A	43138622	G	A	43138622	4	1	240	1	0	0	0	0	0	1	0	0	14169	1299	45	2	922	2	SERINC3	20	43138622	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	443236	43138622	19886898	4062	22912										
PABPC1L	0	genome.wustl.edu	37	chr20	43545421	43545421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtgtgacgagcatggctccCggggtttcggctttgtccat	14	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	43545421	43545421	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	missense	c.412	p.R138W	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	55	0	0	64	12	15.79	-	-	-	T	43545421	C	T	43545421	3	4	240	1	0	0	0	0	1	0	0	0	11437	643	23	1	422	1	PABPC1L	20	43545421	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	406799	43545421	19480099	4063	22913										
PABPC1L	0	genome.wustl.edu	37	chr20	43561819	43561819	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcacggtgcctcatacccaGagagtaggtgagtgtgggta	15	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	43561819	43561819	G	C	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	missense	c.1437	p.Q479H	0.211	superfamily_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	25	0	0	32	6	15.79	-	-	-	C	43561819	G	C	43561819	3	2	240	1	0	0	0	0	1	0	0	0	11437	933	33	2	1475	2	PABPC1L	20	43561819	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16398	43561819	19463701	4064	22914										
DNTTIP1	0	genome.wustl.edu	37	chr20	44424004	44424004	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttccagaaggcagcactGaacgtgcgagacaatgttgg	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44424004	44424004	G	A	SNP	DNTTIP1	ENST00000372622	human	ensembl	69_37n	1	known	silent	c.294	p.L98	0.946	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	45	0	0	66	17	20.48	-	-	-	A	44424004	G	A	44424004	2	1	240	1	0	0	0	0	0	0	0	1	4716	1277	45	2		2	DNTTIP1	20	44424004	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	862185	44424004	18601516	4065	22915										
DNTTIP1	0	genome.wustl.edu	37	chr20	44430644	44430644	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttttttgtggcagaggaaaGgacggcctcctggacacatc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44430644	44430644	G	A	SNP	DNTTIP1	ENST00000372622	human	ensembl	69_37n	1	known	missense	c.505	p.G169R	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	60	0	0	61	12	16.44	-	-	-	A	44430644	G	A	44430644	3	1	240	1	0	0	0	0	1	0	0	0	4716	1001	35	4	531	4	DNTTIP1	20	44430644	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	6640	44430644	18594876	4066	22916	215	2								
DNTTIP1	0	genome.wustl.edu	37	chr20	44430645	44430645	+	Missense_Mutation	SNP	G	G	A													0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttttgtggcagaggaaagGacggcctcctggacacatcc							TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44430645	44430645	G	A	SNP	DNTTIP1	ENST00000372622	human	ensembl	69_37n	1	known	missense	c.506	p.G169E	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	60	0	0	58	12	16.9	-	-	-	A	44430645	G	A	44430645	3	1	240	1	0	0	0	0	1	0	0	0	4716	1174	41	2	532	2	DNTTIP1	20	44430645	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1	44430645	18594875	4067	22917	215	2								
TNNC2	0	genome.wustl.edu	37	chr20	44453025	44453025	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catcatgaccaagaactcctCgaagtcgatggtgccgctgc	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44453025	44453025	C	G	SNP	TNNC2	ENST00000372555	human	ensembl	69_37n	-1	known	missense	c.220	p.E74Q	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TNNC2	HGNC	ENSG00000101470	41	0	0	49	13	20.97	-	-	-	G	44453025	C	G	44453025	3	3	240	1	0	0	0	0	1	0	0	0	16420	893	31	3	274	3	TNNC2	20	44453025	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	22380	44453025	18572495	4068	22918										
NEURL2	0	genome.wustl.edu	37	chr20	44519339	44519339	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatcgggcagagaaaactCgggaacgggggccagactgg	17	9	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44519339	44519339	C	A	SNP	NEURL2	ENST00000372518	human	ensembl	69_37n	-1	known	nonsense	c.292	p.E98*	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,pfam_SOCS_C,smart_Neu_Z,smart_SOCS_C,pfscan_Neu_Z,pfscan_SOCS_C	-	no_errors	NEURL2	HGNC	ENSG00000124257	27	0	0	21	5	19.23	-	-	-	A	44519339	C	A	44519339	4	1	240	1	0	0	0	0	0	1	0	0	10418	893	31	3	573	3	NEURL2	20	44519339	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66314	44519339	18506181	4069	22919										
CTSA	0	genome.wustl.edu	37	chr20	44520933	44520933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccagccagatggtgtcaccCtggagtacaacccctattct	8	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	44520933	44520933	C	T	SNP	CTSA	ENST00000372484	human	ensembl	69_37n	1	known	silent	c.382	p.L128	0.682	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601	188	0	0	84	193	69.68	-	-	-	T	44520933	C	T	44520933	2	4	240	1	0	0	0	0	0	0	0	1	4061	680	24	4		4	CTSA	20	44520933	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1594	44520933	18504587	4070	22920										
ELMO2	0	genome.wustl.edu	37	chr20	45004369	45004369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggttaaaggttaggacttGaaggacatatagctgatggg	14	3	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	45004369	45004369	G	C	SNP	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	missense	c.904	p.Q302E	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	104	0	0	130	32	19.75	-	-	-	C	45004369	G	C	45004369	3	2	240	1	0	0	0	0	1	0	0	0	5103	1299	45	2	1338	2	ELMO2	20	45004369	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	483436	45004369	18021151	4071	22921										
SLC13A3	0	genome.wustl.edu	37	chr20	45212257	45212257	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagggcctttgggacgggaaGaagaacaagatggtgacaat	16	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	45212257	45212257	G	A	SNP	SLC13A3	ENST00000435032	human	ensembl	69_37n	-1	known	missense	c.41	p.S14F	1.000	NULL	pfam_Na/sul_symport	-	no_errors	SLC13A3	HGNC	ENSG00000158296	67	0	0	114	23	16.79	-	-	-	A	45212257	G	A	45212257	3	1	240	1	0	0	0	0	1	0	0	0	14482	933	33	2	655	2	SLC13A3	20	45212257	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	207888	45212257	17813263	4072	22922										
ZMYND8	0	genome.wustl.edu	37	chr20	45865143	45865143	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggcaggtcagcgttgactGaggacacaagggtgctcatg	16	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	45865143	45865143	G	A	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.2804	p.S935L	0.611	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	81	0	0	134	20	12.99	-	-	-	A	45865143	G	A	45865143	3	1	240	1	0	0	0	0	1	0	0	0	17807	1294	45	2	953	2	ZMYND8	20	45865143	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	652886	45865143	17160377	4073	22923										
ZMYND8	0	genome.wustl.edu	37	chr20	45878112	45878112	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcgcttgggagagatgaGaggaacaggggtggactgtt	19	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	45878112	45878112	G	A	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.1714	p.L572F	0.932	pfam_DUF3544	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	102	0	0	118	26	18.06	-	-	-	A	45878112	G	A	45878112	3	1	240	1	0	0	0	0	1	0	0	0	17807	942	33	2	1917	2	ZMYND8	20	45878112	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12969	45878112	17147408	4074	22924										
NCOA3	0	genome.wustl.edu	37	chr20	46255811	46255811	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatttgtatcagaaaatgtCacacaatacctgcaatataa	5	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	46255811	46255811	C	T	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	silent	c.423	p.V141	0.986	pfam_PAS_fold,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	97	0	0	136	21	13.29	-	-	-	T	46255811	C	T	46255811	2	4	240	1	0	0	0	0	0	0	0	1	10302	813	29	2		2	NCOA3	20	46255811	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	377699	46255811	16769709	4075	22925										
NCOA3	0	genome.wustl.edu	37	chr20	46266471	46266471	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttacaataattccatatcctCaaatggtagtcatctgggga	7	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	46266471	46266471	C	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	nonsense	c.2456	p.S819*	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	218	0	0	234	46	16.43	-	-	-	G	46266471	C	G	46266471	4	3	240	1	0	0	0	0	0	1	0	0	10302	838	29	2	2528	2	NCOA3	20	46266471	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	10660	46266471	16759049	4076	22926										
NCOA3	0	genome.wustl.edu	37	chr20	46275974	46275974	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaatcaccatcttttaactCtatgatgaatcagatgaacc	4	10	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	46275974	46275974	C	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.3410	p.S1137C	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	65	0	0	86	14	14	-	-	-	G	46275974	C	G	46275974	3	3	240	1	0	0	0	0	1	0	0	0	10302	913	32	2	3502	2	NCOA3	20	46275974	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9503	46275974	16749546	4077	22927										
SULF2	0	genome.wustl.edu	37	chr20	46305869	46305869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaccctcatcttctttttCaagtgaaacctggaaaaaag	6	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	46305869	46305869	C	G	SNP	SULF2	ENST00000359930	human	ensembl	69_37n	-1	known	missense	c.1203	p.L401F	0.974	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562	61	0	0	61	15	19.74	-	-	-	G	46305869	C	G	46305869	3	3	240	1	0	0	0	0	1	0	0	0	15462	825	29	2	1461	2	SULF2	20	46305869	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	29895	46305869	16719651	4078	22928										
ARFGEF2	0	genome.wustl.edu	37	chr20	47587774	47587774	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgcaatcaagcaatatctCtgtgtggccttgtccaaaaa	7	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47587774	47587774	C	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	silent	c.1308	p.L436	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	178	0	0	211	42	16.6	-	-	-	G	47587774	C	G	47587774	2	3	240	1	0	0	0	0	0	0	0	1	855	900	32	2		2	ARFGEF2	20	47587774	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1281905	47587774	15437746	4079	22929										
ARFGEF2	0	genome.wustl.edu	37	chr20	47633848	47633848	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttagtaatatccaatggaGagaaattcagtcctgaagtc	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47633848	47633848	G	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	nonsense	c.4378	p.E1460*	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	106	0	0	140	22	13.58	-	-	-	T	47633848	G	T	47633848	4	4	240	1	0	0	0	0	0	1	0	0	855	943	33	2	4504	2	ARFGEF2	20	47633848	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46074	47633848	15391672	4080	22930										
STAU1	0	genome.wustl.edu	37	chr20	47734461	47734461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaacaactctcgggctatCatggcagttaccgtggcctt	9	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47734461	47734461	C	T	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.1362	p.M454I	1.000	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	92	0	0	129	32	19.88	-	-	-	T	47734461	C	T	47734461	3	4	240	1	0	0	0	0	1	0	0	0	15363	826	29	2	387	2	STAU1	20	47734461	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	100613	47734461	15291059	4081	22931										
ZNFX1	0	genome.wustl.edu	37	chr20	47870299	47870299	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccgcagcttcttccactatGacaatcctcggctccacctt	5	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47870299	47870299	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.3009	p.V1003	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	87	0	0	133	40	23.12	-	-	-	A	47870299	G	A	47870299	2	1	240	1	0	0	0	0	0	0	0	1	18298	1277	45	2		2	ZNFX1	20	47870299	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	135838	47870299	15155221	4082	22932										
ZNFX1	0	genome.wustl.edu	37	chr20	47887533	47887533	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcattaagagaggttggcagGagggaaaccagcatggaagt	16	5	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47887533	47887533	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.816	p.L272	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	89	0	0	119	19	13.77	-	-	-	A	47887533	G	A	47887533	2	1	240	1	0	0	0	0	0	0	0	1	18298	1161	41	2		2	ZNFX1	20	47887533	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17234	47887533	15137987	4083	22933										
KCNB1	0	genome.wustl.edu	37	chr20	47990422	47990422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatactctccatttcaagttCttcctttggtttgctctgtg	7	10	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	47990422	47990422	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.1675	p.E559K	1.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	61	0	0	69	18	20.69	-	-	-	T	47990422	C	T	47990422	3	4	240	1	0	0	0	0	1	0	0	0	8066	922	32	2	905	2	KCNB1	20	47990422	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	102889	47990422	15035098	4084	22934										
PTGIS	0	genome.wustl.edu	37	chr20	48130909	48130909	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaggaagagcaggagccaGaaggcagcgggacccatatt	15	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	48130909	48130909	G	C	SNP	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	missense	c.879	p.F293L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	20	0	0	33	10	23.26	-	-	-	C	48130909	G	C	48130909	3	2	240	1	0	0	0	0	1	0	0	0	12833	933	33	2	639	2	PTGIS	20	48130909	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	140487	48130909	14894611	4085	22935										
SPATA2	0	genome.wustl.edu	37	chr20	48523239	48523239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagagctcaaaggagaccatCttcacctggagggtctccac	10	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	48523239	48523239	C	G	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	missense	c.480	p.K160N	0.996	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	13	0	0	31	12	27.91	-	-	-	G	48523239	C	G	48523239	3	3	240	1	0	0	0	0	1	0	0	0	15096	912	32	2	1086	2	SPATA2	20	48523239	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	392330	48523239	14502281	4086	22936										
ADNP	0	genome.wustl.edu	37	chr20	49509051	49509051	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgggtgaatcactatcatCatctaactttcgttttttca	6	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	49509051	49509051	C	T	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.2200	p.D734N	0.969	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	74	0	0	98	18	15.52	-	-	-	T	49509051	C	T	49509051	3	4	240	1	0	0	0	0	1	0	0	0	323	826	29	2	1112	2	ADNP	20	49509051	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	985812	49509051	13516469	4087	22937										
ATP9A	0	genome.wustl.edu	37	chr20	50221405	50221405	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcgatgtagcaggccaggctGagcagctccgccactgtcat	13	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	50221405	50221405	G	C	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	silent	c.2958	p.L986	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	31	0	0	33	6	15.38	-	-	-	C	50221405	G	C	50221405	2	2	240	1	0	0	0	0	0	0	0	1	1202	1277	45	2		2	ATP9A	20	50221405	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	712354	50221405	12804115	4088	22938										
BCAS1	0	genome.wustl.edu	37	chr20	52570099	52570099	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgggctggttctttggcttCctgcttgttgctcttctgct	11	11	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	52570099	52570099	C	A	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	nonsense	c.1579	p.E527*	0.997	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	284	1	0.35	337	67	16.54	-	-	-	A	52570099	C	A	52570099	4	1	240	1	0	0	0	0	0	1	0	0	1354	864	30	2	210	2	BCAS1	20	52570099	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2348694	52570099	10455421	4089	22939										
BCAS1	0	genome.wustl.edu	37	chr20	52612549	52612549	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggacagagcaatccgcagttCcaagttcttgtccttctttt	8	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	52612549	52612549	C	A	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.764	p.G255V	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	109	1	0.91	129	27	17.31	-	-	-	A	52612549	C	A	52612549	3	1	240	1	0	0	0	0	1	0	0	0	1354	855	30	2	1022	2	BCAS1	20	52612549	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	42450	52612549	10412971	4090	22940										
CYP24A1	0	genome.wustl.edu	37	chr20	52774034	52774034	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggattaattttttccttctCctgaagccaacgttcaggtc	7	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	52774034	52774034	C	G	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	missense	c.1327	p.E443Q	0.918	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	59	0	0	63	9	12.5	-	-	-	G	52774034	C	G	52774034	3	3	240	1	0	0	0	0	1	0	0	0	4185	864	30	2	225	2	CYP24A1	20	52774034	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	161485	52774034	10251486	4091	22941										
DOK5	0	genome.wustl.edu	37	chr20	53205257	53205257	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatgagtggtgcaaagtactCcagatggagtgtgtaggaac	15	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	53205257	53205257	C	G	SNP	DOK5	ENST00000262593	human	ensembl	69_37n	1	known	silent	c.321	p.L107	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134	117	0	0	129	32	19.88	-	-	-	G	53205257	C	G	53205257	2	3	240	1	0	0	0	0	0	0	0	1	4735	842	30	2		2	DOK5	20	53205257	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	431223	53205257	9820263	4092	22942										
DOK5	0	genome.wustl.edu	37	chr20	53226984	53226984	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccgagacggggaggccatCtatcagaaagtccactctgc	11	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	53226984	53226984	C	A	SNP	DOK5	ENST00000262593	human	ensembl	69_37n	1	known	silent	c.657	p.I219	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134	46	0	0	52	10	15.87	-	-	-	A	53226984	C	A	53226984	2	1	240	1	0	0	0	0	0	0	0	1	4735	903	32	2		2	DOK5	20	53226984	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21727	53226984	9798536	4093	22943										
MC3R	0	genome.wustl.edu	37	chr20	54824026	54824026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcaggtcttcatcaagcccGaggttttcctgtctctgggc	11	12	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	54824026	54824026	G	A	SNP	MC3R	ENST00000243911	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089	55	0	0	70	17	19.54	-	-	-	A	54824026	G	A	54824026	3	1	240	1	0	0	0	0	1	0	0	0	9436	1059	37	1	129	1	MC3R	20	54824026	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1597042	54824026	8201494	4094	22944										
AURKA	0	genome.wustl.edu	37	chr20	54963243	54963243	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaaatgcagttttctttaGatcggtccatgatgcctgaa	9	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	54963243	54963243	G	T	SNP	AURKA	ENST00000312783	human	ensembl	69_37n	-1	known	missense	c.11	p.S4Y	0.585	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	115	0	0	127	28	18.06	-	-	-	T	54963243	G	T	54963243	3	4	240	1	0	0	0	0	1	0	0	0	1225	942	33	2	1232	2	AURKA	20	54963243	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	139217	54963243	8062277	4095	22945										
CASS4	0	genome.wustl.edu	37	chr20	55026946	55026946	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcacattaccaaatcctcaGaaatcggaatggatttatga	7	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	55026946	55026946	G	C	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	1	known	missense	c.714	p.Q238H	1.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	33	0	0	37	6	13.95	-	-	-	C	55026946	G	C	55026946	3	2	240	1	0	0	0	0	1	0	0	0	2708	933	33	2	732	2	CASS4	20	55026946	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	63703	55026946	7998574	4096	22946										
CASS4	0	genome.wustl.edu	37	chr20	55027880	55027880	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctggaagttcttgtgactGacagtgtccagaacagccca	10	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	55027880	55027880	G	T	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	1	known	missense	c.1648	p.D550Y	0.828	pfam_Serine_rich	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	61	0	0	104	19	15.45	-	-	-	T	55027880	G	T	55027880	3	4	240	1	0	0	0	0	1	0	0	0	2708	1290	45	2	1666	2	CASS4	20	55027880	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	934	55027880	7997640	4097	22947										
CTCFL	0	genome.wustl.edu	37	chr20	56073662	56073662	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgccttcatccacttcctCtttgactctggctgtggttt	7	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	56073662	56073662	C	G	SNP	CTCFL	ENST00000423479	human	ensembl	69_37n	-1	known	missense	c.1936	p.E646Q	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	89	0	0	177	24	11.94	-	-	-	G	56073662	C	G	56073662	3	3	240	1	0	0	0	0	1	0	0	0	4033	922	32	2	59	2	CTCFL	20	56073662	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1045782	56073662	6951858	4098	22948										
CTCFL	0	genome.wustl.edu	37	chr20	56099181	56099181	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtctttttcctcctccttCaggcctttttccggcatcaa	5	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	56099181	56099181	C	T	SNP	CTCFL	ENST00000423479	human	ensembl	69_37n	-1	known	silent	c.81	p.L27	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	129	0	0	227	29	11.33	-	-	-	T	56099181	C	T	56099181	2	4	240	1	0	0	0	0	0	0	0	1	4033	813	29	2		2	CTCFL	20	56099181	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	25519	56099181	6926339	4099	22949										
PCK1	0	genome.wustl.edu	37	chr20	56138162	56138162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgaccgcagagagatcatctCctttggcagtgggtacggcg	14	10	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	56138162	56138162	C	G	SNP	PCK1	ENST00000319441	human	ensembl	69_37n	1	known	missense	c.689	p.S230C	1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253	32	0	0	76	11	12.64	-	-	-	G	56138162	C	G	56138162	3	3	240	1	0	0	0	0	1	0	0	0	11654	855	30	2	703	2	PCK1	20	56138162	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38981	56138162	6887358	4100	22950										
VAPB	0	genome.wustl.edu	37	chr20	57016007	57016007	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatccacaactgcatcaaaGacagaaacaccaatagtgtc	5	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	57016007	57016007	G	C	SNP	VAPB	ENST00000475243	human	ensembl	69_37n	1	known	missense	c.441	p.K147N	1.000	pirsf_Vesicle-associated_membrane	pfam_Major_sperm,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_Major_sperm	-	no_errors	VAPB	HGNC	ENSG00000124164	53	0	0	76	24	24	-	-	-	C	57016007	G	C	57016007	3	2	240	1	0	0	0	0	1	0	0	0	17219	933	33	2	459	2	VAPB	20	57016007	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	877845	57016007	6009513	4101	22951										
PHACTR3	0	genome.wustl.edu	37	chr20	58348347	58348347	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accccaggccaagccacactCttccaagcctccagcatgaa	6	18	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	58348347	58348347	C	G	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	silent	c.765	p.L255	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	34	0	0	55	8	12.7	-	-	-	G	58348347	C	G	58348347	2	3	240	1	0	0	0	0	0	0	0	1	11885	900	32	2		2	PHACTR3	20	58348347	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1332340	58348347	4677173	4102	22952										
SYCP2	0	genome.wustl.edu	37	chr20	58441394	58441394	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagactgtgaatctttttcaAaattctccagctcctctatg	5	10	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	58441394	58441394	A	C	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	missense	c.4274	p.F1425C	0.970	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	67	0	0	100	14	12.28	-	-	-	C	58441394	A	C	58441394	3	2	240	1	0	0	0	0	1	0	0	0	15524	14	1	5	338	5	SYCP2	20	58441394	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	93047	58441394	4584126	4103	22953										
CDH26	0	genome.wustl.edu	37	chr20	58574648	58574648	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgttctacagacatggtCagatgttgaaggccagaggc	13	8	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	58574648	58574648	C	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	nonsense	c.2027	p.S676*	0.001	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	65	0	0	81	13	13.83	-	-	-	G	58574648	C	G	58574648	4	3	240	1	0	0	0	0	0	1	0	0	3139	838	29	2	2103	2	CDH26	20	58574648	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	133254	58574648	4450872	4104	22954										
ADRM1	0	genome.wustl.edu	37	chr20	60881304	60881304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccggaaagtcaacgagtatCtgaacaaccccccgatgcct	9	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	60881304	60881304	C	G	SNP	ADRM1	ENST00000253003	human	ensembl	69_37n	1	known	missense	c.382	p.L128V	1.000	pfam_26S_Psome_Ubiquitin-recp_Rpn13	pfam_26S_Psome_Ubiquitin-recp_Rpn13	-	no_errors	ADRM1	HGNC	ENSG00000130706	54	0	0	93	25	21.19	-	-	-	G	60881304	C	G	60881304	3	3	240	1	0	0	0	0	1	0	0	0	345	912	32	2	392	2	ADRM1	20	60881304	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2306656	60881304	2144216	4105	22955										
DIDO1	0	genome.wustl.edu	37	chr20	61524224	61524224	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgacaaattttgccacactCtgcatgttaataaatccttt	5	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	61524224	61524224	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.3192	p.Q1064	0.659	pfam_SPOC_C	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	128	0	0	134	36	21.18	-	-	-	T	61524224	C	T	61524224	2	4	240	1	0	0	0	0	0	0	0	1	4558	912	32	2		2	DIDO1	20	61524224	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	642920	61524224	1501296	4106	22956										
DIDO1	0	genome.wustl.edu	37	chr20	61525826	61525826	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctgactggtggtgtctttCaacatgctgctgaagacgtc	12	9	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	61525826	61525826	C	G	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.2511	p.L837F	0.940	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	95	0	0	124	27	17.88	-	-	-	G	61525826	C	G	61525826	3	3	240	1	0	0	0	0	1	0	0	0	4558	825	29	2	4264	2	DIDO1	20	61525826	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1602	61525826	1499694	4107	22957										
DIDO1	0	genome.wustl.edu	37	chr20	61542181	61542181	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgttggggtcgtaaccctCacattcaggcttcggtcggc	14	12	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	61542181	61542181	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.784	p.E262K	1.000	superfamily_Znf_FYVE_PHD	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	88	0	0	104	16	13.33	-	-	-	T	61542181	C	T	61542181	3	4	240	1	0	0	0	0	1	0	0	0	4558	835	29	2	6124	2	DIDO1	20	61542181	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	16355	61542181	1483339	4108	22958										
ARFGAP1	0	genome.wustl.edu	37	chr20	61909529	61909529	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcttttgaagactggctGaatgatgacctcggctccta	11	9	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	61909529	61909529	G	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	69_37n	1	known	silent	c.504	p.L168	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199	80	0	0	133	19	12.5	-	-	-	T	61909529	G	T	61909529	2	4	240	1	0	0	0	0	0	0	0	1	851	1277	45	2		2	ARFGAP1	20	61909529	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	367348	61909529	1115991	4109	22959										
KCNQ2	0	genome.wustl.edu	37	chr20	62070008	62070008	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgctgccgggttccgcctCttctcaaagtgcttctgcct	9	16	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62070008	62070008	C	G	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.993	p.K331N	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	45	0	0	71	12	14.46	-	-	-	G	62070008	C	G	62070008	3	3	240	1	0	0	0	0	1	0	0	0	8137	912	32	2	1733	2	KCNQ2	20	62070008	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	160479	62070008	955512	4110	22960										
EEF1A2	0	genome.wustl.edu	37	chr20	62129087	62129087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccacgtggccgatgaccacGatgttgatgtgggtcttctc	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62129087	62129087	G	C	SNP	EEF1A2	ENST00000217182	human	ensembl	69_37n	-1	known	missense	c.30	p.I10M	0.996	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210	83	0	0	129	20	13.33	-	-	-	C	62129087	G	C	62129087	3	2	240	1	0	0	0	0	1	0	0	0	4959	1048	37	3	1389	3	EEF1A2	20	62129087	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	59079	62129087	896433	4111	22961										
PRIC285	0	genome.wustl.edu	37	chr20	62193004	62193004	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggctcttcctgagcagcttCctgctgcccacacgcggcac	11	17	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62193004	62193004	C	G	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	missense	c.6786	p.R2262S	0.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	9	0	0	16	7	30.43	-	-	-	G	62193004	C	G	62193004	3	3	240	1	0	0	0	0	1	0	0	0	12566	854	30	2	1195	2	PRIC285	20	62193004	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	63917	62193004	832516	4112	22962										
PRIC285	0	genome.wustl.edu	37	chr20	62197421	62197421	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgcaggccccgaaggagcaGagggccacggcgtcccccac	14	18	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62197421	62197421	G	C	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	silent	c.2754	p.L918	0.985	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	12	0	0	8	4	33.33	-	-	-	C	62197421	G	C	62197421	2	2	240	1	0	0	0	0	0	0	0	1	12566	929	33	2		2	PRIC285	20	62197421	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4417	62197421	828099	4113	22963										
ZBTB46	0	genome.wustl.edu	37	chr20	62407185	62407185	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatgcagggcgtcgtccttCtctggggtgaggggagggcc	19	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62407185	62407185	C	T	SNP	ZBTB46	ENST00000245663	human	ensembl	69_37n	-1	known	silent	c.1068	p.E356	1.000	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584	30	0	0	50	15	23.08	-	-	-	T	62407185	C	T	62407185	2	4	240	1	0	0	0	0	0	0	0	1	17643	912	32	2		2	ZBTB46	20	62407185	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	209764	62407185	618335	4114	22964										
MYT1	0	genome.wustl.edu	37	chr20	62853303	62853303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagatgaccaggaagtgtcgGaagagaattttgaggagcgg	16	5	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	20	62853303	62853303	G	A	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.2380	p.E794K	0.998	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	60	0	0	80	43	34.96	-	-	-	A	62853303	G	A	62853303	3	1	240	1	0	0	0	0	1	0	0	0	10178	1175	41	2	2345	2	MYT1	20	62853303	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	446118	62853303	172217	4115	22965										
TPTE	0	genome.wustl.edu	37	chr21	10914413	10914413	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacaacctttttctccatttCtatttggatttttagatcac	4	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	10914413	10914413	C	T	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.1306	p.E436K	0.001	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	160	0	0	57	18	24	-	-	-	T	10914413	C	T	10914413	3	4	240	1	0	0	0	0	1	0	0	0	16526	922	32	2	365	2	TPTE	21	10914413	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		10914413	37215482	4116	22966										
RBM11	0	genome.wustl.edu	37	chr21	15588559	15588559	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtgtttgttgggaatttaGaggcccgagttcgggaagag	16	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	15588559	15588559	G	C	SNP	RBM11	ENST00000400577	human	ensembl	69_37n	1	known	missense	c.52	p.E18Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM11	HGNC	ENSG00000185272	81	0	0	39	10	20.41	-	-	-	C	15588559	G	C	15588559	3	2	240	1	0	0	0	0	1	0	0	0	13195	943	33	2	54	2	RBM11	21	15588559	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4674146	15588559	32541336	4117	22967										
APP	0	genome.wustl.edu	37	chr21	27394168	27394168	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggattacctcgaaccacctCttccacagactctgtggtgg	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	27394168	27394168	C	G	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.853	p.E285Q	1.000	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	187	0	0	160	54	25.23	-	-	-	G	27394168	C	G	27394168	3	3	240	1	0	0	0	0	1	0	0	0	817	922	32	2	1511	2	APP	21	27394168	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11805609	27394168	20735727	4118	22968										
CYYR1	0	genome.wustl.edu	37	chr21	27852724	27852724	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgataaatactattccaaaAacaatgcccgcaattgcagt	5	9	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	27852724	27852724	A	C	SNP	CYYR1	ENST00000299340	human	ensembl	69_37n	-1	known	silent	c.201	p.V67	0.997	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265	35	0	0	14	29	37.66	-	-	-	C	27852724	A	C	27852724	2	2	240	1	0	0	0	0	0	0	0	1	4242	1	1	5		5	CYYR1	21	27852724	Silent	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	458556	27852724	20277171	4119	22969										
CCT8	0	genome.wustl.edu	37	chr21	30434565	30434565	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatggcgccatcttccttttCtatcaaaaaattaaatatat	3	8	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	30434565	30434565	C	G	SNP	CCT8	ENST00000286788	human	ensembl	69_37n	-1	known	splice_site	c.1097-1	e11-1	1.000	-	-	-	no_errors	CCT8	HGNC	ENSG00000156261	154	0	0	120	40	25	-	-	-	G	30434565	C	G	30434565	5	3	240	1	0	0	0	0	0	0	1	0	2989	927	32	2	570	2	CCT8	21	30434565	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2581841	30434565	17695330	4120	22970										
GRIK1	0	genome.wustl.edu	37	chr21	31015152	31015152	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcatcacttgcctctttGatcaggttcataaatctggg	10	9	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	31015152	31015152	G	A	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	silent	c.1092	p.I364	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	56	0	0	34	12	26.09	-	-	-	A	31015152	G	A	31015152	2	1	240	1	0	0	0	0	0	0	0	1	6824	1280	45	2		2	GRIK1	21	31015152	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	580587	31015152	17114743	4121	22971										
CLDN8	0	genome.wustl.edu	37	chr21	31587872	31587872	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcccgtgatgatgaagatGattccagccgtcagcagaat	11	9	1	6			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	31587872	31587872	G	A	SNP	CLDN8	ENST00000286809	human	ensembl	69_37n	-1	known	silent	c.372	p.I124	0.060	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284	61	0	0	57	58	50.43	-	-	-	A	31587872	G	A	31587872	2	1	240	1	0	0	0	0	0	0	0	1	3521	1280	45	2		2	CLDN8	21	31587872	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	572720	31587872	16542023	4122	22972										
CLDN8	0	genome.wustl.edu	37	chr21	31588139	31588139	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacgatgttgttttcaatGaaggccgacactctccactg	8	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	31588139	31588139	G	A	SNP	CLDN8	ENST00000286809	human	ensembl	69_37n	-1	known	silent	c.105	p.F35	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284	41	0	0	38	7	15.56	-	-	-	A	31588139	G	A	31588139	2	1	240	1	0	0	0	0	0	0	0	1	3521	1281	45	2		2	CLDN8	21	31588139	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	267	31588139	16541756	4123	22973										
TCP10L	0	genome.wustl.edu	37	chr21	33949139	33949139	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttccagtaggtgttgctCttctgtcttgacgtctcctg	10	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	33949139	33949139	C	G	SNP	TCP10L	ENST00000300258	human	ensembl	69_37n	-1	known	missense	c.593	p.R198T	0.005	NULL	NULL	-	no_errors	TCP10L	HGNC	ENSG00000242220	147	0	0	101	22	17.89	-	-	-	G	33949139	C	G	33949139	3	3	240	1	0	0	0	0	1	0	0	0	15806	913	32	2	58	2	TCP10L	21	33949139	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2361000	33949139	14180756	4124	22974										
SON	0	genome.wustl.edu	37	chr21	34923720	34923720	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagacccatatattagcatCcaacaccatggactcccaaa	6	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	34923720	34923720	C	A	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	missense	c.2183	p.S728Y	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	137	0	0	83	22	20.95	-	-	-	A	34923720	C	A	34923720	3	1	240	1	0	0	0	0	1	0	0	0	15015	855	30	2	2193	2	SON	21	34923720	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	974581	34923720	13206175	4125	22975										
ITSN1	0	genome.wustl.edu	37	chr21	35154375	35154375	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctacgagaccaactggatGaagtggagaaagaaactaga	11	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	35154375	35154375	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.1762	p.E588K	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	60	0	0	48	14	22.58	-	-	-	A	35154375	G	A	35154375	3	1	240	1	0	0	0	0	1	0	0	0	7980	1291	45	2	1820	2	ITSN1	21	35154375	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	230655	35154375	12975520	4126	22976										
CLIC6	0	genome.wustl.edu	37	chr21	36081683	36081683	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagaacctgctgaaggccctGaggaagctggataattactt	11	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	36081683	36081683	G	A	SNP	CLIC6	ENST00000360731	human	ensembl	69_37n	1	known	silent	c.1800	p.L600	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC6	HGNC	ENSG00000159212	95	0	0	77	29	27.36	-	-	-	A	36081683	G	A	36081683	2	1	240	1	0	0	0	0	0	0	0	1	3560	1277	45	2		2	CLIC6	21	36081683	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	927308	36081683	12048212	4127	22977										
SIM2	0	genome.wustl.edu	37	chr21	38095422	38095422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacgcgggcctgacctgcagCggatacaaggtacggggagt	16	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38095422	38095422	C	T	SNP	SIM2	ENST00000431229	human	ensembl	69_37n	1	putative	missense	c.346	p.R116W	0.003	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,smart_PAC,pfscan_PAS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIM2	HGNC	ENSG00000159263	60	0	0	56	16	22.22	-	-	-	T	38095422	C	T	38095422	3	4	240	1	0	0	0	0	1	0	0	0	14413	767	27	1	552	1	SIM2	21	38095422	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2013739	38095422	10034473	4128	22978										
TTC3	0	genome.wustl.edu	37	chr21	38467718	38467718	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agatttgatatagctattatCtattacaccagagccattga	6	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38467718	38467718	C	G	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.756	p.I252M	0.996	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	85	0	0	63	15	19.23	-	-	-	G	38467718	C	G	38467718	3	3	240	1	0	0	0	0	1	0	0	0	16794	903	32	2	786	2	TTC3	21	38467718	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	372296	38467718	9662177	4129	22979										
TTC3	0	genome.wustl.edu	37	chr21	38511012	38511012	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccttggaataggacagcctGaggtaagatttgtaacagtg	12	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38511012	38511012	G	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	nonsense	c.1657	p.E553*	1.000	pfscan_TPR-contain_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	209	0	0	71	72	50.35	-	-	-	T	38511012	G	T	38511012	4	4	240	1	0	0	0	0	0	1	0	0	16794	1291	45	2	1727	2	TTC3	21	38511012	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	43294	38511012	9618883	4130	22980										
TTC3	0	genome.wustl.edu	37	chr21	38522414	38522414	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgtcttacccctgactgtGaaggtgtcatttctaagatt	8	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38522414	38522414	G	A	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.2155	p.E719K	0.999	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	129	0	0	68	20	22.73	-	-	-	A	38522414	G	A	38522414	3	1	240	1	0	0	0	0	1	0	0	0	16794	1291	45	2	2245	2	TTC3	21	38522414	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	11402	38522414	9607481	4131	22981										
DSCR3	0	genome.wustl.edu	37	chr21	38610902	38610902	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctatggtgctgttgataatCtggataggctgtaaacaaaa	10	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38610902	38610902	C	G	SNP	DSCR3	ENST00000309117	human	ensembl	69_37n	-1	known	missense	c.210	p.Q70H	1.000	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538	59	0	0	31	34	52.31	-	-	-	G	38610902	C	G	38610902	3	3	240	1	0	0	0	0	1	0	0	0	4806	912	32	2	707	2	DSCR3	21	38610902	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	88488	38610902	9518993	4132	22982										
DYRK1A	0	genome.wustl.edu	37	chr21	38878481	38878481	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggcacagtggtgggcacttCacagctgccgtgcaggccat	14	13	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	38878481	38878481	C	A	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.1626	p.F542L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	38	0	0	30	11	26.19	-	-	-	A	38878481	C	A	38878481	3	1	240	1	0	0	0	0	1	0	0	0	4889	825	29	2	1664	2	DYRK1A	21	38878481	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267579	38878481	9251414	4133	22983										
KCNJ15	0	genome.wustl.edu	37	chr21	39672032	39672032	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttgagcttgtggtcctcctCaatgccactgtggaatccac	9	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	39672032	39672032	C	G	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	silent	c.849	p.L283	0.998	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	79	0	0	50	15	23.08	-	-	-	G	39672032	C	G	39672032	2	3	240	1	0	0	0	0	0	0	0	1	8103	813	29	2		2	KCNJ15	21	39672032	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	793551	39672032	8457863	4134	22984										
BRWD1	0	genome.wustl.edu	37	chr21	40590533	40590533	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtttatagagcaatttctCtagctcatctgttgtgacag	9	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	40590533	40590533	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.3436	p.E1146Q	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	246	0	0	172	54	23.89	-	-	-	G	40590533	C	G	40590533	3	3	240	1	0	0	0	0	1	0	0	0	1533	922	32	2	3817	2	BRWD1	21	40590533	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	918501	40590533	7539362	4135	22985										
MX2	0	genome.wustl.edu	37	chr21	42780062	42780062	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctgcttcaagagcagagtGagaccgctaccaagagaaga	13	9	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	42780062	42780062	G	A	SNP	MX2	ENST00000330714	human	ensembl	69_37n	1	known	missense	c.2050	p.E684K	0.636	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX2	HGNC	ENSG00000183486	73	0	0	47	10	17.54	-	-	-	A	42780062	G	A	42780062	3	1	240	1	0	0	0	0	1	0	0	0	10070	1291	45	2	2100	2	MX2	21	42780062	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2189529	42780062	5349833	4136	22986										
ABCG1	0	genome.wustl.edu	37	chr21	43691253	43691253	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggccattatgggtccttcCggggccgggaagtccacgct	15	12	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	43691253	43691253	C	T	SNP	ABCG1	ENST00000398437	human	ensembl	69_37n	1	known	silent	c.798	p.S266	0.001	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	110	0	0	90	33	26.83	-	-	-	T	43691253	C	T	43691253	2	4	240	1	0	0	0	0	0	0	0	1	68	639	23	1		1	ABCG1	21	43691253	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	911191	43691253	4438642	4137	22987										
CBS	0	genome.wustl.edu	37	chr21	44485530	44485530	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagaattggggatttcgttCttcagccgccaggccacccc	11	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	44485530	44485530	C	T	SNP	CBS	ENST00000398168	human	ensembl	69_37n	-1	known	silent	c.633	p.K211	0.999	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Cysta_beta_synth	pfam_PyrdxlP-dep_enz_bsu,pfam_Cysta_beta_synth_core,superfamily_PyrdxlP-dep_enz_bsu,smart_Cysta_beta_synth_core,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200	27	0	0	15	15	50	-	-	-	T	44485530	C	T	44485530	2	4	240	1	0	0	0	0	0	0	0	1	2736	912	32	2		2	CBS	21	44485530	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	794277	44485530	3644365	4138	22988										
SIK1	0	genome.wustl.edu	37	chr21	44840966	44840966	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcggcaggttaggcccatcGaaggggagagaaccgcagac	16	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	44840966	44840966	G	A	SNP	SIK1	ENST00000270162	human	ensembl	69_37n	-1	known	silent	c.672	p.F224	0.945	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178	29	0	0	11	8	40	-	-	-	A	44840966	G	A	44840966	2	1	240	1	0	0	0	0	0	0	0	1	14406	1049	37	1		1	SIK1	21	44840966	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	355436	44840966	3288929	4139	22989										
HSF2BP	0	genome.wustl.edu	37	chr21	45033732	45033732	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttgagtttggtacactgtCctggcttcaagtctcccaga	9	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	45033732	45033732	C	G	SNP	HSF2BP	ENST00000291560	human	ensembl	69_37n	-1	known	missense	c.671	p.G224A	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207	87	0	0	61	15	19.74	-	-	-	G	45033732	C	G	45033732	3	3	240	1	0	0	0	0	1	0	0	0	7448	855	30	2	345	2	HSF2BP	21	45033732	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	192766	45033732	3096163	4140	22990										
POFUT2	0	genome.wustl.edu	37	chr21	46686137	46686137	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggctctccagcggcacttCatgaacttcgtgaacaagca	9	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	46686137	46686137	C	T	SNP	POFUT2	ENST00000334538	human	ensembl	69_37n	-1	known	silent	c.1142	p.*381	0.020	NULL	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	35	0	0	29	8	21.62	-	-	-	T	46686137	C	T	46686137	2	4	240	1	0	0	0	0	0	0	0	1	12258	841	29	2		2	POFUT2	21	46686137	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1652405	46686137	1443758	4141	22991										
COL18A1	0	genome.wustl.edu	37	chr21	46888313	46888313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taccacttccccagcctcttCttccgtgacttctcactgct	4	18	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	46888313	46888313	C	G	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	missense	c.1509	p.F503L	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	35	0	0	27	7	20.59	-	-	-	G	46888313	C	G	46888313	3	3	240	1	0	0	0	0	1	0	0	0	3705	912	32	2	1629	2	COL18A1	21	46888313	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	202176	46888313	1241582	4142	22992										
COL6A2	0	genome.wustl.edu	37	chr21	47545703	47545703	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcgtgcggcttgcagggacGcgtgtgggcgtggtgcagta	20	9	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	47545703	47545703	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	silent	c.1974	p.T658	0.497	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	18	0	0	9	9	50	-	-	-	A	47545703	G	A	47545703	2	1	240	1	0	0	0	0	0	0	0	1	3730	1074	38	1		1	COL6A2	21	47545703	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	657390	47545703	584192	4143	22993										
MCM3AP	0	genome.wustl.edu	37	chr21	47664968	47664968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgagaagcaagaccgccCagacgcctctctcttctgtc	8	16	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	47664968	47664968	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	silent	c.4791	p.L1597	0.048	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	55	0	0	66	14	17.28	-	-	-	T	47664968	C	T	47664968	2	4	240	1	0	0	0	0	0	0	0	1	9459	581	21	4		4	MCM3AP	21	47664968	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	119265	47664968	464927	4144	22994										
MCM3AP	0	genome.wustl.edu	37	chr21	47703716	47703716	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gactgtctgtgctctcgcttCtgttactctgacgcgccgga	11	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	47703716	47703716	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.1256	p.R419K	0.047	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	66	0	0	40	32	44.44	-	-	-	T	47703716	C	T	47703716	3	4	240	1	0	0	0	0	1	0	0	0	9459	913	32	2	4794	2	MCM3AP	21	47703716	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	38748	47703716	426179	4145	22995										
PCNT	0	genome.wustl.edu	37	chr21	47754670	47754670	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacccagcagaacagcgtggGatgttcacaaaggtattctt	10	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	21	47754670	47754670	G	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	silent	c.627	p.G209	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	73	0	0	97	31	24.22	-	-	-	C	47754670	G	C	47754670	2	2	240	1	0	0	0	0	0	0	0	1	11663	1161	41	2		2	PCNT	21	47754670	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	50954	47754670	375225	4146	22996										
POTEH	0	genome.wustl.edu	37	chr22	16267011	16267011	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggtggaattaatccatcatCaccattgtcagcagtggcac	9	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	16267011	16267011	C	T	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	missense	c.1438	p.D480N	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	853	1	0.12	756	112	12.89	-	-	-	T	16267011	C	T	16267011	3	4	240	1	0	0	0	0	1	0	0	0	12341	826	29	2	207	2	POTEH	22	16267011	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		16267011	35037555	4147	22997										
GAB4	0	genome.wustl.edu	37	chr22	17451047	17451047	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgtgtttctcctcatgatGaatggggcctcagaaccctg	11	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	17451047	17451047	G	A	SNP	GAB4	ENST00000400588	human	ensembl	69_37n	-1	known	silent	c.723	p.F241	0.002	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568	52	0	0	124	17	12.06	-	-	-	A	17451047	G	A	17451047	2	1	240	1	0	0	0	0	0	0	0	1	6200	1281	45	2		2	GAB4	22	17451047	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1184036	17451047	33853519	4148	22998										
BCL2L13	0	genome.wustl.edu	37	chr22	18138517	18138517	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcctctgggatttcactatGaaacaaagtatgttgttctc	8	8	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	18138517	18138517	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	69_37n	1	known	missense	c.40	p.E14K	1.000	NULL	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L13	HGNC	ENSG00000099968	144	0	0	139	23	14.2	-	-	-	A	18138517	G	A	18138517	3	1	240	1	0	0	0	0	1	0	0	0	1375	1291	45	2	42	2	BCL2L13	22	18138517	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	687470	18138517	33166049	4149	22999										
PRODH	0	genome.wustl.edu	37	chr22	18908915	18908915	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctgtcgatgaggctgctCcagtccagcaggtccatggt	13	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	18908915	18908915	C	T	SNP	PRODH	ENST00000357068	human	ensembl	69_37n	-1	known	nonsense	c.951	p.W317*	1.000	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH	HGNC	ENSG00000100033	30	0	0	39	20	33.9	-	-	-	T	18908915	C	T	18908915	4	4	240	1	0	0	0	0	0	1	0	0	12629	856	30	2	879	2	PRODH	22	18908915	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	770398	18908915	32395651	4150	23000										
DGCR2	0	genome.wustl.edu	37	chr22	19028679	19028679	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtatgccgtgtagggaggtgGagggtcgtggaaatggaaag	20	3	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	19028679	19028679	G	C	SNP	DGCR2	ENST00000263196	human	ensembl	69_37n	-1	known	missense	c.1288	p.P430A	1.000	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413	77	0	0	114	34	22.97	-	-	-	C	19028679	G	C	19028679	3	2	240	1	0	0	0	0	1	0	0	0	4497	1174	41	2	372	2	DGCR2	22	19028679	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	119764	19028679	32275887	4151	23001										
GNB1L	0	genome.wustl.edu	37	chr22	19794230	19794230	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccagcttggcatctgccttCggcttcagggcgcacactga	11	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	19794230	19794230	C	A	SNP	GNB1L	ENST00000329517	human	ensembl	69_37n	-1	known	silent	c.468	p.P156	0.958	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1L	HGNC	ENSG00000185838	32	0	0	41	12	22.64	-	-	-	A	19794230	C	A	19794230	2	1	240	1	0	0	0	0	0	0	0	1	6568	871	31	3		3	GNB1L	22	19794230	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	765551	19794230	31510336	4152	23002										
GNB1L	0	genome.wustl.edu	37	chr22	19808817	19808817	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgcagcgcatgcaccggtGactgggtgcctcggaggaca	16	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	19808817	19808817	G	A	SNP	GNB1L	ENST00000329517	human	ensembl	69_37n	-1	known	missense	c.62	p.S21L	0.294	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1L	HGNC	ENSG00000185838	17	0	0	21	9	30	-	-	-	A	19808817	G	A	19808817	3	1	240	1	0	0	0	0	1	0	0	0	6568	1294	45	2	945	2	GNB1L	22	19808817	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14587	19808817	31495749	4153	23003										
ARVCF	0	genome.wustl.edu	37	chr22	19960535	19960535	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtctgcagcacgtgtgacgcCgccttcgcttcgcgtaccga	12	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	19960535	19960535	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	69_37n	-1	known	silent	c.2463	p.A821	0.265	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889	38	0	0	40	20	33.33	-	-	-	T	19960535	C	T	19960535	2	4	240	1	0	0	0	0	0	0	0	1	1007	639	23	1		1	ARVCF	22	19960535	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	151718	19960535	31344031	4154	23004										
ARVCF	0	genome.wustl.edu	37	chr22	19961757	19961757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcgggctggtacagcagctCaaagcctaggtgcagggcaa	14	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	19961757	19961757	C	G	SNP	ARVCF	ENST00000263207	human	ensembl	69_37n	-1	known	missense	c.1966	p.E656Q	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889	27	0	0	46	10	17.86	-	-	-	G	19961757	C	G	19961757	3	3	240	1	0	0	0	0	1	0	0	0	1007	835	29	2	954	2	ARVCF	22	19961757	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1222	19961757	31342809	4155	23005										
TRMT2A	0	genome.wustl.edu	37	chr22	20103649	20103649	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtccatagaggggtcaccaCgtcggccactcgtgttactg	12	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	20103649	20103649	C	A	SNP	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	missense	c.511	p.V171L	0.996	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	37	0	0	57	17	22.97	-	-	-	A	20103649	C	A	20103649	3	1	240	1	0	0	0	0	1	0	0	0	16661	536	19	3	1410	3	TRMT2A	22	20103649	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	141892	20103649	31200917	4156	23006										
PI4KA	0	genome.wustl.edu	37	chr22	21081626	21081626	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgggtccgtgggcgcccaGcacagcacatggctgagctc	16	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	21081626	21081626	G	C	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.4833	p.C1611W	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	17	0	0	22	6	20.69	-	-	-	C	21081626	G	C	21081626	3	2	240	1	0	0	0	0	1	0	0	0	11947	963	34	4	1535	4	PI4KA	22	21081626	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	977977	21081626	30222940	4157	23007										
LZTR1	0	genome.wustl.edu	37	chr22	21349235	21349235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggagttcgagcgcctctCctctccactgatagtggaga	12	11	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	21349235	21349235	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	missense	c.1862	p.S621F	0.998	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	30	0	0	22	10	31.25	-	-	-	T	21349235	C	T	21349235	3	4	240	1	0	0	0	0	1	0	0	0	9204	855	30	2	1924	2	LZTR1	22	21349235	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	267609	21349235	29955331	4158	23008										
CCDC116	0	genome.wustl.edu	37	chr22	21989373	21989373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctgttccccaccagcttgGagcccacctcagatctgccg	8	18	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	21989373	21989373	G	C	SNP	CCDC116	ENST00000292779	human	ensembl	69_37n	1	known	missense	c.1021	p.E341Q	0.000	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180	26	0	0	26	14	35	-	-	-	C	21989373	G	C	21989373	3	2	240	1	0	0	0	0	1	0	0	0	2778	1175	41	2	1031	2	CCDC116	22	21989373	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	640138	21989373	29315193	4159	23009										
ZNF280A	0	genome.wustl.edu	37	chr22	22869163	22869163	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttctttcttgggatcaaaGgtcttgttttgacttgctag	9	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	22869163	22869163	G	T	SNP	ZNF280A	ENST00000302097	human	ensembl	69_37n	-1	known	silent	c.792	p.T264	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548	129	0	0	131	48	26.82	-	-	-	T	22869163	G	T	22869163	2	4	240	1	0	0	0	0	0	0	0	1	17910	987	35	4		4	ZNF280A	22	22869163	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	879790	22869163	28435403	4160	23010										
IGLL5	0	genome.wustl.edu	37	chr22	23235904	23235904	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgctccagcccagcccccaGagagcagaccccaggtgctg	11	18	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	23235904	23235904	G	C	SNP	IGLL5	ENST00000532223	human	ensembl	69_37n	1	known	missense	c.234	p.Q78H	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	IGLL5	HGNC	ENSG00000254709	61	0	0	90	34	27.42	-	-	-	C	23235904	G	C	23235904	3	2	240	1	0	0	0	0	1	0	0	0	7648	933	33	2	237	2	IGLL5	22	23235904	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	366741	23235904	28068662	4161	23011										
RAB36	0	genome.wustl.edu	37	chr22	23501136	23501136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggcaggctcctgcttcatCttcctcgtgggaaccaagaa	11	12	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	23501136	23501136	C	G	SNP	RAB36	ENST00000263116	human	ensembl	69_37n	1	known	missense	c.696	p.I232M	0.336	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228	49	0	0	51	17	25	-	-	-	G	23501136	C	G	23501136	3	3	240	1	0	0	0	0	1	0	0	0	13009	903	32	2	726	2	RAB36	22	23501136	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	265232	23501136	27803430	4162	23012										
RAB36	0	genome.wustl.edu	37	chr22	23503088	23503088	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaacgtgaaggcattcttCagccgcgtagccgccctggc	13	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	23503088	23503088	C	A	SNP	RAB36	ENST00000263116	human	ensembl	69_37n	1	known	missense	c.840	p.F280L	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228	23	0	0	31	15	32.61	-	-	-	A	23503088	C	A	23503088	3	1	240	1	0	0	0	0	1	0	0	0	13009	825	29	2	878	2	RAB36	22	23503088	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1952	23503088	27801478	4163	23013										
ZNF70	0	genome.wustl.edu	37	chr22	24086937	24086937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctggttgtggggttctgtGaggtgcgttaggtcctgagt	19	5	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	24086937	24086937	G	A	SNP	ZNF70	ENST00000341976	human	ensembl	69_37n	-1	known	missense	c.391	p.H131Y	0.081	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF70	HGNC	ENSG00000187792	149	0	0	244	43	14.98	-	-	-	A	24086937	G	A	24086937	3	1	240	1	0	0	0	0	1	0	0	0	18199	1290	45	2	953	2	ZNF70	22	24086937	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	583849	24086937	27217629	4164	23014										
CABIN1	0	genome.wustl.edu	37	chr22	24458432	24458432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catgatgctgatgtctctctCctgcatggaactccagctgg	10	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	24458432	24458432	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	missense	c.1640	p.S547F	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	61	0	0	88	36	29.03	-	-	-	T	24458432	C	T	24458432	3	4	240	1	0	0	0	0	1	0	0	0	2553	855	30	2	1686	2	CABIN1	22	24458432	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	371495	24458432	26846134	4165	23015										
CABIN1	0	genome.wustl.edu	37	chr22	24563177	24563177	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagtcaggcaagacacttCtgttggatgcctaccgtgtg	12	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	24563177	24563177	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	silent	c.5578	p.L1860	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	27	0	0	29	33	53.23	-	-	-	T	24563177	C	T	24563177	2	4	240	1	0	0	0	0	0	0	0	1	2553	912	32	2		2	CABIN1	22	24563177	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	104745	24563177	26741389	4166	23016										
SUSD2	0	genome.wustl.edu	37	chr22	24583394	24583394	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccaggcaccagtccccagGagctgttcctgtttggggcc	12	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	24583394	24583394	G	C	SNP	SUSD2	ENST00000358321	human	ensembl	69_37n	1	known	missense	c.1867	p.E623Q	0.557	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Complement_control_module,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994	66	0	0	69	31	31	-	-	-	C	24583394	G	C	24583394	3	2	240	1	0	0	0	0	1	0	0	0	15499	1175	41	2	1909	2	SUSD2	22	24583394	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	20217	24583394	26721172	4167	23017										
GGT5	0	genome.wustl.edu	37	chr22	24629553	24629553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcccgggcattgatgacctCcaccttccctggagtagggc	11	15	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	24629553	24629553	C	G	SNP	GGT5	ENST00000398292	human	ensembl	69_37n	-1	known	missense	c.313	p.E105Q	1.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998	11	0	0	13	5	27.78	-	-	-	G	24629553	C	G	24629553	3	3	240	1	0	0	0	0	1	0	0	0	6414	864	30	2	1490	2	GGT5	22	24629553	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	46159	24629553	26675013	4168	23018										
SGSM1	0	genome.wustl.edu	37	chr22	25250979	25250979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagtaaatactatgagaagGaagctctcctgatggaccct	9	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	25250979	25250979	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.472	p.E158K	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	129	0	0	85	89	50.86	-	-	-	A	25250979	G	A	25250979	3	1	240	1	0	0	0	0	1	0	0	0	14310	1175	41	2	494	2	SGSM1	22	25250979	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	621426	25250979	26053587	4169	23019										
SGSM1	0	genome.wustl.edu	37	chr22	25313624	25313624	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgcctttccttccttgacaGatcctggactcagagctgtt	8	13	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	25313624	25313624	G	C	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	splice_site	c.3094-1	e24-1	1.000	-	-	-	no_errors	SGSM1	HGNC	ENSG00000167037	104	0	0	161	34	17.44	-	-	-	C	25313624	G	C	25313624	5	2	240	1	0	0	0	0	0	0	1	0	14310	956	33	2	3187	2	SGSM1	22	25313624	Splice_Site	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	62645	25313624	25990942	4170	23020										
MYO18B	0	genome.wustl.edu	37	chr22	26168458	26168458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctccagccccgggggccctCggtgccttctgcagggaagg	15	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	26168458	26168458	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.1850	p.S617L	0.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	25	0	0	39	7	15.22	-	-	-	T	26168458	C	T	26168458	3	4	240	1	0	0	0	0	1	0	0	0	10138	893	31	1	1872	1	MYO18B	22	26168458	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	854834	26168458	25136108	4171	23021										
SEZ6L	0	genome.wustl.edu	37	chr22	26689006	26689006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagccccatggccctgatGgacaaaggtgagaatgagct	12	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	26689006	26689006	G	T	SNP	SEZ6L	ENST00000248933	human	ensembl	69_37n	1	known	missense	c.729	p.M243I	0.899	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	24	0	0	33	16	32	-	-	-	T	26689006	G	T	26689006	3	4	240	1	0	0	0	0	1	0	0	0	14231	1348	47	4	735	4	SEZ6L	22	26689006	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	520548	26689006	24615560	4172	23022										
TFIP11	0	genome.wustl.edu	37	chr22	26890795	26890795	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggaagaagtgcttttcaaGaagtcccaccaggctagaga	13	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	26890795	26890795	G	C	SNP	TFIP11	ENST00000405938	human	ensembl	69_37n	-1	known	missense	c.1960	p.L654V	0.994	pfam_GCFC_dom	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109	55	0	0	87	32	26.89	-	-	-	C	26890795	G	C	26890795	3	2	240	1	0	0	0	0	1	0	0	0	15902	942	33	2	565	2	TFIP11	22	26890795	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	201789	26890795	24413771	4173	23023										
TFIP11	0	genome.wustl.edu	37	chr22	26895343	26895343	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcttctccagctcgtggaaGaggttgaccaccatgtcccg	10	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	26895343	26895343	G	A	SNP	TFIP11	ENST00000405938	human	ensembl	69_37n	-1	known	silent	c.1056	p.L352	0.162	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109	28	0	0	43	15	25.86	-	-	-	A	26895343	G	A	26895343	2	1	240	1	0	0	0	0	0	0	0	1	15902	929	33	2		2	TFIP11	22	26895343	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4548	26895343	24409223	4174	23024										
CHEK2	0	genome.wustl.edu	37	chr22	29091771	29091771	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagtcccaacagaaacaaGaacttcaggcgccaagtagg	10	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29091771	29091771	G	C	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.1315	p.L439V	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	59	0	0	63	30	32.26	-	-	-	C	29091771	G	C	29091771	3	2	240	1	0	0	0	0	1	0	0	0	3364	942	33	2	465	2	CHEK2	22	29091771	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2196428	29091771	22212795	4175	23025										
HSCB	0	genome.wustl.edu	37	chr22	29138168	29138168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggagaccgctaagctgcGatgctgcgtcgcaggcggga	17	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29138168	29138168	G	A	SNP	HSCB	ENST00000216027	human	ensembl	69_37n	1	known	missense	c.85	p.D29N	0.823	NULL	pfam_Heat_shock_cognate_B_oligo_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Heat_shock_cognate_B_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209	20	0	0	24	10	28.57	-	-	-	A	29138168	G	A	29138168	3	1	240	1	0	0	0	0	1	0	0	0	7425	1058	37	1	87	1	HSCB	22	29138168	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	46397	29138168	22166398	4176	23026										
XBP1	0	genome.wustl.edu	37	chr22	29193155	29193155	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actacaaggccatgagttttCtctcgtaaaagctgattttc	7	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29193155	29193155	C	G	SNP	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	missense	c.363	p.E121D	1.000	pfam_bZIP_1,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	100	0	0	136	34	20	-	-	-	G	29193155	C	G	29193155	3	3	240	1	0	0	0	0	1	0	0	0	17519	912	32	2	805	2	XBP1	22	29193155	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	54987	29193155	22111411	4177	23027										
XBP1	0	genome.wustl.edu	37	chr22	29195100	29195100	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactcattcgagccttctttCgatctctggcagtctgagct	8	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29195100	29195100	C	G	SNP	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	missense	c.269	p.R90P	1.000	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	126	0	0	154	52	25.24	-	-	-	G	29195100	C	G	29195100	3	3	240	1	0	0	0	0	1	0	0	0	17519	884	31	3	903	3	XBP1	22	29195100	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1945	29195100	22109466	4178	23028										
EWSR1	0	genome.wustl.edu	37	chr22	29695604	29695604	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttaggtggtgatcgtggcaGaggtggccctggtggcatgc	18	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29695604	29695604	G	C	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	missense	c.1709	p.R570T	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	172	0	0	253	83	24.7	-	-	-	C	29695604	G	C	29695604	3	2	240	1	0	0	0	0	1	0	0	0	5332	942	33	2	1873	2	EWSR1	22	29695604	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	500504	29695604	21608962	4179	23029										
NIPSNAP1	0	genome.wustl.edu	37	chr22	29956727	29956727	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggtcctcaacctaccccaGagatggtgcaccacgtagag	10	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	29956727	29956727	G	C	SNP	NIPSNAP1	ENST00000216121	human	ensembl	69_37n	-1	known	silent	c.702	p.L234	0.994	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP1	HGNC	ENSG00000184117	63	0	0	27	59	68.6	-	-	-	C	29956727	G	C	29956727	2	2	240	1	0	0	0	0	0	0	0	1	10501	929	33	2		2	NIPSNAP1	22	29956727	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	261123	29956727	21347839	4180	23030										
HORMAD2	0	genome.wustl.edu	37	chr22	30514992	30514992	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgactgagatgtaccagttCaaattcaaatacacgaaaga	8	7	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	30514992	30514992	C	T	SNP	HORMAD2	ENST00000336726	human	ensembl	69_37n	1	known	silent	c.366	p.F122	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD2	HGNC	ENSG00000176635	73	0	0	113	13	10.32	-	-	-	T	30514992	C	T	30514992	2	4	240	1	0	0	0	0	0	0	0	1	7338	825	29	2		2	HORMAD2	22	30514992	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	558265	30514992	20789574	4181	23031										
SEC14L4	0	genome.wustl.edu	37	chr22	30890862	30890862	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acccaccttacctgctggtaGacctccacagctggcttcca	7	17	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	30890862	30890862	G	A	SNP	SEC14L4	ENST00000255858	human	ensembl	69_37n	-1	known	silent	c.510	p.V170	0.977	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488	50	0	0	87	19	17.92	-	-	-	A	30890862	G	A	30890862	2	1	240	1	0	0	0	0	0	0	0	1	14072	929	33	2		2	SEC14L4	22	30890862	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	375870	30890862	20413704	4182	23032										
PES1	0	genome.wustl.edu	37	chr22	30975275	30975275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcttcctcctcctcttctGactcattcaggtttcctaga	4	16	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	30975275	30975275	G	A	SNP	PES1	ENST00000354694	human	ensembl	69_37n	-1	known	missense	c.1370	p.S457L	0.647	NULL	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029	71	0	0	101	44	30.34	-	-	-	A	30975275	G	A	30975275	3	1	240	1	0	0	0	0	1	0	0	0	11806	1294	45	2	408	2	PES1	22	30975275	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	84413	30975275	20329291	4183	23033										
DUSP18	0	genome.wustl.edu	37	chr22	31059454	31059454	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcatcaaacggacttccttCtcatagatgtcagggatcat	7	10	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	31059454	31059454	C	G	SNP	DUSP18	ENST00000334679	human	ensembl	69_37n	-1	known	missense	c.537	p.E179D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP18	HGNC	ENSG00000167065	61	0	0	89	25	21.93	-	-	-	G	31059454	C	G	31059454	3	3	240	1	0	0	0	0	1	0	0	0	4852	912	32	2	33	2	DUSP18	22	31059454	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	84179	31059454	20245112	4184	23034										
SMTN	0	genome.wustl.edu	37	chr22	31485898	31485898	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggcccagtgccttacagctGaggttccaggcagcccagag	13	13	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	31485898	31485898	G	A	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	missense	c.685	p.E229K	0.967	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	40	0	0	54	11	16.92	-	-	-	A	31485898	G	A	31485898	3	1	240	1	0	0	0	0	1	0	0	0	14903	1291	45	2	707	2	SMTN	22	31485898	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	426444	31485898	19818668	4185	23035										
LIMK2	0	genome.wustl.edu	37	chr22	31662065	31662065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagatcttccggccctgtGacctaatccatggggaggtc	12	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	31662065	31662065	G	A	SNP	LIMK2	ENST00000331728	human	ensembl	69_37n	1	known	missense	c.988	p.D330N	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	88	0	0	122	55	31.07	-	-	-	A	31662065	G	A	31662065	3	1	240	1	0	0	0	0	1	0	0	0	8857	1290	45	2	1075	2	LIMK2	22	31662065	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	176167	31662065	19642501	4186	23036										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31838963	31838963	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtaccttcactggccttctGagtatcctctttactgtcac	6	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	31838963	31838963	G	C	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.2191	p.Q731E	0.617	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	144	0	0	179	63	26.03	-	-	-	C	31838963	G	C	31838963	3	2	240	1	0	0	0	0	1	0	0	0	5072	1299	45	2	782	2	EIF4ENIF1	22	31838963	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	176898	31838963	19465603	4187	23037										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31859053	31859053	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcagagaaccactctggttCttcttctgtgtaagaatcat	8	9	5	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	31859053	31859053	C	T	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.652	p.E218K	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	103	0	0	141	60	29.85	-	-	-	T	31859053	C	T	31859053	3	4	240	1	0	0	0	0	1	0	0	0	5072	922	32	2	2364	2	EIF4ENIF1	22	31859053	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20090	31859053	19445513	4188	23038										
ISX	0	genome.wustl.edu	37	chr22	35463228	35463228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagtgatatggacagaccaGaagggccaggtgaagagggc	18	6	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	35463228	35463228	G	C	SNP	ISX	ENST00000308700	human	ensembl	69_37n	1	known	missense	c.148	p.E50Q	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ISX	HGNC	ENSG00000175329	54	0	0	31	53	63.1	-	-	-	C	35463228	G	C	35463228	3	2	240	1	0	0	0	0	1	0	0	0	7919	943	33	2	150	2	ISX	22	35463228	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3604175	35463228	15841338	4189	23039										
APOL2	0	genome.wustl.edu	37	chr22	36623807	36623807	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacggatgttcctcccaatCccttgtgtgacttggtacca	9	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	36623807	36623807	C	G	SNP	APOL2	ENST00000249066	human	ensembl	69_37n	-1	known	silent	c.657	p.G219	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	52	0	0	117	15	11.36	-	-	-	G	36623807	C	G	36623807	2	3	240	1	0	0	0	0	0	0	0	1	808	842	30	2		2	APOL2	22	36623807	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1160579	36623807	14680759	4190	23040										
APOL2	0	genome.wustl.edu	37	chr22	36624167	36624167	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctcctctgcaagggcacgGagcttccttatgtgatcctc	9	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	36624167	36624167	G	A	SNP	APOL2	ENST00000249066	human	ensembl	69_37n	-1	known	silent	c.297	p.L99	0.005	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	55	0	0	91	29	24.17	-	-	-	A	36624167	G	A	36624167	2	1	240	1	0	0	0	0	0	0	0	1	808	1161	41	2		2	APOL2	22	36624167	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	360	36624167	14680399	4191	23041										
MYH9	0	genome.wustl.edu	37	chr22	36691695	36691695	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaggtcttcctggagttcaGagatctgagattccagctcc	10	12	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	36691695	36691695	G	C	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.3341	p.S1114C	0.363	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	47	0	0	68	31	31.31	-	-	-	C	36691695	G	C	36691695	3	2	240	1	0	0	0	0	1	0	0	0	10114	942	33	2	2605	2	MYH9	22	36691695	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	67528	36691695	14612871	4192	23042										
PVALB	0	genome.wustl.edu	37	chr22	37213029	37213029	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcttgatgtcctcagcgttCagcaagtctgtcatcgacat	8	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	37213029	37213029	C	G	SNP	PVALB	ENST00000406910	human	ensembl	69_37n	-1	novel	nonstop	c.17	p.*6S	0.947	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PVALB	HGNC	ENSG00000100362	37	0	0	30	8	21.05	-	-	-	G	37213029	C	G	37213029	4	3	240	1	0	0	0	0	0	0	0	0	12919	813	29	2	327	2	PVALB	22	37213029	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	521334	37213029	14091537	4193	23043										
NCF4	0	genome.wustl.edu	37	chr22	37272009	37272009	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccagcctcattcccctttCccccaccccacaccccactt	3	24	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	37272009	37272009	C	A	SNP	NCF4	ENST00000397147	human	ensembl	69_37n	1	known	missense	c.942	p.F314L	0.000	NULL	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF4	HGNC	ENSG00000100365	16	0	0	40	14	25.93	-	-	-	A	37272009	C	A	37272009	3	1	240	1	0	0	0	0	1	0	0	0	10290	854	30	2	972	2	NCF4	22	37272009	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	58980	37272009	14032557	4194	23044										
CYTH4	0	genome.wustl.edu	37	chr22	37690715	37690715	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccacagaagctgaaggatgaGattgcagatgtgtttgccca	12	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	37690715	37690715	G	A	SNP	CYTH4	ENST00000248901	human	ensembl	69_37n	1	known	silent	c.117	p.E39	0.999	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH4	HGNC	ENSG00000100055	84	0	0	130	20	13.33	-	-	-	A	37690715	G	A	37690715	2	1	240	1	0	0	0	0	0	0	0	1	4237	933	33	2		2	CYTH4	22	37690715	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	418706	37690715	13613851	4195	23045										
TRIOBP	0	genome.wustl.edu	37	chr22	38121705	38121705	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccagagccccgcgcccctGagagtgaaccgccccaccac	9	21	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38121705	38121705	G	C	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.3142	p.E1048Q	0.974	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	37	0	0	67	12	15.19	-	-	-	C	38121705	G	C	38121705	3	2	240	1	0	0	0	0	1	0	0	0	16649	1291	45	2	3160	2	TRIOBP	22	38121705	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	430990	38121705	13182861	4196	23046										
TRIOBP	0	genome.wustl.edu	37	chr22	38131260	38131260	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggccgaggccaccccagtCaatggacacagccccgcact	11	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38131260	38131260	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	silent	c.4917	p.V1639	0.547	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	28	0	0	25	12	32.43	-	-	-	T	38131260	C	T	38131260	2	4	240	1	0	0	0	0	0	0	0	1	16649	813	29	2		2	TRIOBP	22	38131260	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9555	38131260	13173306	4197	23047										
EIF3L	0	genome.wustl.edu	37	chr22	38247340	38247340	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtatgaacagcaaacctatCaggtgatccctgaggtgatc	10	9	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38247340	38247340	C	G	SNP	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	missense	c.265	p.Q89E	1.000	NULL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	60	0	0	104	16	13.33	-	-	-	G	38247340	C	G	38247340	3	3	240	1	0	0	0	0	1	0	0	0	5059	827	29	2	146	2	EIF3L	22	38247340	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	116080	38247340	13057226	4198	23048										
EIF3L	0	genome.wustl.edu	37	chr22	38259032	38259032	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacaactactgcaatctcttCaactacattcttagtgagtc	4	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38259032	38259032	C	T	SNP	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	silent	c.621	p.F207	1.000	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	116	0	0	130	54	29.35	-	-	-	T	38259032	C	T	38259032	2	4	240	1	0	0	0	0	0	0	0	1	5059	825	29	2		2	EIF3L	22	38259032	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	11692	38259032	13045534	4199	23049										
PICK1	0	genome.wustl.edu	37	chr22	38461060	38461060	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcacagtggcagctggcgatGagatcaccggtgtcaatggc	15	10	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38461060	38461060	G	A	SNP	PICK1	ENST00000356976	human	ensembl	69_37n	1	known	missense	c.205	p.E69K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Arfaptin_homology_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_Arfaptin_homology_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151	81	0	0	79	36	31.3	-	-	-	A	38461060	G	A	38461060	3	1	240	1	0	0	0	0	1	0	0	0	11955	1291	45	2	215	2	PICK1	22	38461060	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	202028	38461060	12843506	4200	23050										
DMC1	0	genome.wustl.edu	37	chr22	38948683	38948683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atccttaccacagagggtatGagaaagctgggtttttccag	11	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	38948683	38948683	G	A	SNP	DMC1	ENST00000216024	human	ensembl	69_37n	-1	known	missense	c.409	p.H137Y	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206	200	1	0.5	211	66	23.83	-	-	-	A	38948683	G	A	38948683	3	1	240	1	0	0	0	0	1	0	0	0	4615	1290	45	2	645	2	DMC1	22	38948683	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	487623	38948683	12355883	4201	23051										
APOBEC3D	0	genome.wustl.edu	37	chr22	39428252	39428252	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tacagtgatgatgagccattCaagccttggaagggactaca	11	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	39428252	39428252	C	T	SNP	APOBEC3D	ENST00000216099	human	ensembl	69_37n	1	known	silent	c.1092	p.F364	0.009	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3D	HGNC	ENSG00000243811	135	0	0	120	37	23.57	-	-	-	T	39428252	C	T	39428252	2	4	240	1	0	0	0	0	0	0	0	1	794	825	29	2		2	APOBEC3D	22	39428252	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	479569	39428252	11876314	4202	23052										
MGAT3	0	genome.wustl.edu	37	chr22	39883502	39883502	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacctggtgtccagctttttCtggaacaatgccccggtcac	9	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	39883502	39883502	C	G	SNP	MGAT3	ENST00000341184	human	ensembl	69_37n	1	known	missense	c.150	p.F50L	1.000	NULL	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268	51	0	0	73	26	26.26	-	-	-	G	39883502	C	G	39883502	3	3	240	1	0	0	0	0	1	0	0	0	9615	912	32	2	152	2	MGAT3	22	39883502	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	455250	39883502	11421064	4203	23053										
MGAT3	0	genome.wustl.edu	37	chr22	39884611	39884611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttcgccggctggcactgctCctggtgcttcacgcccgagg	13	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	39884611	39884611	C	A	SNP	MGAT3	ENST00000341184	human	ensembl	69_37n	1	known	missense	c.1259	p.S420Y	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268	14	0	0	35	16	31.37	-	-	-	A	39884611	C	A	39884611	3	1	240	1	0	0	0	0	1	0	0	0	9615	855	30	2	1261	2	MGAT3	22	39884611	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1109	39884611	11419955	4204	23054										
ENTHD1	0	genome.wustl.edu	37	chr22	40139768	40139768	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctattcagactcatgctcatCaagatgttattgatgacatt	6	8	4	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	40139768	40139768	C	T	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	silent	c.1740	p.L580	0.045	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	97	0	0	143	29	16.86	-	-	-	T	40139768	C	T	40139768	2	4	240	1	0	0	0	0	0	0	0	1	5174	825	29	2		2	ENTHD1	22	40139768	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	255157	40139768	11164798	4205	23055										
GRAP2	0	genome.wustl.edu	37	chr22	40351888	40351888	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggaaggatatgtgcccaaGaatttcatagacatccagtt	9	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	40351888	40351888	G	C	SNP	GRAP2	ENST00000344138	human	ensembl	69_37n	1	known	missense	c.144	p.K48N	1.000	pfam_SH3_2,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351	101	0	0	104	46	30.26	-	-	-	C	40351888	G	C	40351888	3	2	240	1	0	0	0	0	1	0	0	0	6805	933	33	2	150	2	GRAP2	22	40351888	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	212120	40351888	10952678	4206	23056										
TNRC6B	0	genome.wustl.edu	37	chr22	40677266	40677266	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcaatcggcacagggctCaacccccaaaacttcgctgc	10	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	40677266	40677266	C	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	silent	c.3555	p.L1185	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	80	0	0	134	25	15.72	-	-	-	G	40677266	C	G	40677266	2	3	240	1	0	0	0	0	0	0	0	1	16436	813	29	2		2	TNRC6B	22	40677266	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	325378	40677266	10627300	4207	23057										
SGSM3	0	genome.wustl.edu	37	chr22	40801715	40801715	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctggatgatgtctgccatCatcgaggacctgctccccgc	10	14	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	40801715	40801715	C	T	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	silent	c.681	p.I227	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	26	0	0	52	11	17.46	-	-	-	T	40801715	C	T	40801715	2	4	240	1	0	0	0	0	0	0	0	1	14312	816	29	2		2	SGSM3	22	40801715	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	124449	40801715	10502851	4208	23058										
SGSM3	0	genome.wustl.edu	37	chr22	40802612	40802612	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcaagcacctggcctatctCattgcagaccagggccagct	10	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	40802612	40802612	C	A	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	silent	c.1131	p.L377	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	19	0	0	17	11	39.29	-	-	-	A	40802612	C	A	40802612	2	1	240	1	0	0	0	0	0	0	0	1	14312	813	29	2		2	SGSM3	22	40802612	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	897	40802612	10501954	4209	23059										
L3MBTL2	0	genome.wustl.edu	37	chr22	41621039	41621039	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggaggccattgaccccctGaatctgggcaacatctgcgt	11	13	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	41621039	41621039	G	A	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	silent	c.1320	p.L440	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	141	0	0	155	71	31.42	-	-	-	A	41621039	G	A	41621039	2	1	240	1	0	0	0	0	0	0	0	1	8646	1277	45	2		2	L3MBTL2	22	41621039	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	818427	41621039	9683527	4210	23060										
ZC3H7B	0	genome.wustl.edu	37	chr22	41752409	41752409	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaacccaggaaagcctggaGaagggacccccatcagttct	10	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	41752409	41752409	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.2446	p.E816K	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	45	0	0	54	22	28.95	-	-	-	A	41752409	G	A	41752409	3	1	240	1	0	0	0	0	1	0	0	0	17669	943	33	2	2524	2	ZC3H7B	22	41752409	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	131370	41752409	9552157	4211	23061										
TOB2	0	genome.wustl.edu	37	chr22	41833044	41833044	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagctcccttctcaccaatCtggtaggacacctcaaaggg	8	14	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	41833044	41833044	C	T	SNP	TOB2	ENST00000327492	human	ensembl	69_37n	-1	known	silent	c.306	p.Q102	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864	66	0	0	73	21	22.34	-	-	-	T	41833044	C	T	41833044	2	4	240	1	0	0	0	0	0	0	0	1	16443	912	32	2		2	TOB2	22	41833044	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	80635	41833044	9471522	4212	23062										
MEI1	0	genome.wustl.edu	37	chr22	42128505	42128505	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gatcaagctgttcacaagctCagccatgtgcagagatgctg	11	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	42128505	42128505	C	A	SNP	MEI1	ENST00000401548	human	ensembl	69_37n	1	known	nonsense	c.1229	p.S410*	0.928	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	47	0	0	75	14	15.73	-	-	-	A	42128505	C	A	42128505	4	1	240	1	0	0	0	0	0	1	0	0	9536	838	29	2	1271	2	MEI1	22	42128505	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	295461	42128505	9176061	4213	23063										
SEPT3	0	genome.wustl.edu	37	chr22	42392933	42392933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctcctgggcactgtccttCcacctgtgccagccaccccc	8	21	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	42392933	42392933	C	T	SNP	SEPT3	ENST00000396426	human	ensembl	69_37n	1	known	missense	c.1039	p.P347S	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167	80	0	0	88	13	12.75	-	-	-	T	42392933	C	T	42392933	3	4	240	1	0	0	0	0	1	0	0	0	14153	855	30	2	1123	2	SEPT3	22	42392933	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	264428	42392933	8911633	4214	23064										
CYP2D6	0	genome.wustl.edu	37	chr22	42523970	42523970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcattgaagctgctctCagggttccccttggcctgag	10	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	42523970	42523970	C	T	SNP	CYP2D6	ENST00000360608	human	ensembl	69_37n	-1	known	missense	c.859	p.E287K	0.789	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197	43	0	0	31	14	31.11	-	-	-	T	42523970	C	T	42523970	3	4	240	1	0	0	0	0	1	0	0	0	4200	835	29	2	650	2	CYP2D6	22	42523970	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	131037	42523970	8780596	4215	23065										
SCUBE1	0	genome.wustl.edu	37	chr22	43619223	43619223	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaagacacttgcctgtctCtatgaagggagatacgagag	12	7	1	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	43619223	43619223	C	G	SNP	SCUBE1	ENST00000360835	human	ensembl	69_37n	-1	known	splice_site	c.1208-1	e11-1	1.000	-	-	-	no_errors	SCUBE1	HGNC	ENSG00000159307	15	0	0	10	5	33.33	-	-	-	G	43619223	C	G	43619223	5	3	240	1	0	0	0	0	0	0	1	0	14032	927	32	2	1807	2	SCUBE1	22	43619223	Splice_Site	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1095253	43619223	7685343	4216	23066										
PPARA	0	genome.wustl.edu	37	chr22	46628068	46628068	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagtttgattttgccatgaAgttcaatgcactggaactgg	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	46628068	46628068	A	C	SNP	PPARA	ENST00000262735	human	ensembl	69_37n	1	known	missense	c.1091	p.K364T	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951	182	0	0	239	35	12.77	-	-	-	C	46628068	A	C	46628068	3	2	240	1	0	0	0	0	1	0	0	0	12370	72	3	5	1109	5	PPARA	22	46628068	Missense_Mutation	SNP	A	TCGA-AC-A23H-01A-11D-A159-09	3008845	46628068	4676498	4217	23067										
PKDREJ	0	genome.wustl.edu	37	chr22	46654366	46654366	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagaagaactgactgacaGaatgaacaaaaagatgcaaa	8	7	0	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	46654366	46654366	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.4854	p.F1618	0.005	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	110	0	0	86	53	38.13	-	-	-	A	46654366	G	A	46654366	2	1	240	1	0	0	0	0	0	0	0	1	12044	933	33	2		2	PKDREJ	22	46654366	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26298	46654366	4650200	4218	23068										
PKDREJ	0	genome.wustl.edu	37	chr22	46655190	46655190	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatctggatgggtaacgtGaaatgttctgtccaaagtgg	12	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	46655190	46655190	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.4030	p.H1344Y	0.011	superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	76	0	0	72	17	19.1	-	-	-	A	46655190	G	A	46655190	3	1	240	1	0	0	0	0	1	0	0	0	12044	1290	45	2	2735	2	PKDREJ	22	46655190	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	824	46655190	4649376	4219	23069										
CELSR1	0	genome.wustl.edu	37	chr22	46930596	46930596	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggtcctgaatcacgtaggtGatgcgggcattctctcctgt	13	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	46930596	46930596	G	A	SNP	CELSR1	ENST00000454637	human	ensembl	69_37n	-1	putative	missense	c.596	p.S199L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_EGF-like_dom,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,pfscan_EG-like_dom,pfscan_Cadherin,prints_Cadherin	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CELSR1	HGNC	ENSG00000075275	52	0	0	82	11	11.83	-	-	-	A	46930596	G	A	46930596	3	1	240	1	0	0	0	0	1	0	0	0	3250	1280	45	2	6712	2	CELSR1	22	46930596	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	275406	46930596	4373970	4220	23070										
GRAMD4	0	genome.wustl.edu	37	chr22	47057285	47057285	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgctttttaagaaccgagGagcagatggctcagcagccc	11	12	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	47057285	47057285	G	C	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	missense	c.412	p.E138Q	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	36	0	0	41	5	10.87	-	-	-	C	47057285	G	C	47057285	3	2	240	1	0	0	0	0	1	0	0	0	6803	1175	41	2	426	2	GRAMD4	22	47057285	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	126689	47057285	4247281	4221	23071										
CERK	0	genome.wustl.edu	37	chr22	47085891	47085891	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaggacccctgcacgcacctGacctcgatggcagggctgtg	14	14	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	47085891	47085891	G	A	SNP	CERK	ENST00000216264	human	ensembl	69_37n	-1	known	silent	c.1539	p.V513	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422	22	0	0	15	12	44.44	-	-	-	A	47085891	G	A	47085891	2	1	240	1	0	0	0	0	0	0	0	1	3296	1277	45	2		2	CERK	22	47085891	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	28606	47085891	4218675	4222	23072										
ZBED4	0	genome.wustl.edu	37	chr22	50277793	50277793	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agttgtctcatgaggcacgtGaggcgcgcacacccgaccgt	13	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50277793	50277793	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	silent	c.483	p.V161	0.992	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	38	0	0	47	17	26.56	-	-	-	A	50277793	G	A	50277793	2	1	240	1	0	0	0	0	0	0	0	1	17616	1277	45	2		2	ZBED4	22	50277793	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3191902	50277793	1026773	4223	23073										
ZBED4	0	genome.wustl.edu	37	chr22	50277907	50277907	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgcggacgcgggtgacctCagcaccatcctctcacccat	9	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50277907	50277907	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	silent	c.597	p.L199	0.020	NULL	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	24	0	0	28	16	36.36	-	-	-	T	50277907	C	T	50277907	2	4	240	1	0	0	0	0	0	0	0	1	17616	813	29	2		2	ZBED4	22	50277907	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	114	50277907	1026659	4224	23074										
ZBED4	0	genome.wustl.edu	37	chr22	50278050	50278050	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgtttcggagaagtgcggcaGagaagaagccctggtggggt	18	7	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50278050	50278050	G	C	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.740	p.R247T	0.175	NULL	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	26	0	0	26	15	36.59	-	-	-	C	50278050	G	C	50278050	3	2	240	1	0	0	0	0	1	0	0	0	17616	942	33	2	742	2	ZBED4	22	50278050	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	143	50278050	1026516	4225	23075										
PANX2	0	genome.wustl.edu	37	chr22	50616035	50616035	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgtggacatcgtgctgctGtgcgtcatgaacctcatcat	12	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50616035	50616035	G	A	SNP	PANX2	ENST00000395842	human	ensembl	69_37n	1	known	silent	c.894	p.L298	0.936	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150	33	0	0	44	16	26.67	-	-	-	A	50616035	G	A	50616035	2	1	240	1	0	0	0	0	0	0	0	1	11494	1364	48	4		4	PANX2	22	50616035	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	337985	50616035	688531	4226	23076										
PLXNB2	0	genome.wustl.edu	37	chr22	50718989	50718989	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaggaagagcgtgtgcatGatgtccgtgtagtactccag	13	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50718989	50718989	G	T	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	silent	c.4104	p.I1368	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	11	0	0	17	8	32	-	-	-	T	50718989	G	T	50718989	2	4	240	1	0	0	0	0	0	0	0	1	12198	1280	45	2		2	PLXNB2	22	50718989	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	102954	50718989	585577	4227	23077										
PLXNB2	0	genome.wustl.edu	37	chr22	50720621	50720621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaggactgaccgtcatggGctgcagggattcagcctccc	13	14	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50720621	50720621	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.3109	p.P1037S	0.513	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	16	0	0	14	10	41.67	-	-	-	A	50720621	G	A	50720621	3	1	240	1	0	0	0	0	1	0	0	0	12198	1203	42	4	2483	4	PLXNB2	22	50720621	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1632	50720621	583945	4228	23078										
SBF1	0	genome.wustl.edu	37	chr22	50885852	50885852	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtcgatgacacccttgcactCtgtgtccacacggtggtcgt	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50885852	50885852	C	A	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	nonsense	c.5482	p.E1828*	0.995	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	32	0	0	36	12	25	-	-	-	A	50885852	C	A	50885852	4	1	240	1	0	0	0	0	0	1	0	0	13945	922	32	2	207	2	SBF1	22	50885852	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	165231	50885852	418714	4229	23079										
SBF1	0	genome.wustl.edu	37	chr22	50904848	50904848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgagccgctggtagctccggGacaggaagagaaccttgtgc	15	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50904848	50904848	G	T	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	missense	c.719	p.S240Y	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	20	0	0	23	6	20.69	-	-	-	T	50904848	G	T	50904848	3	4	240	1	0	0	0	0	1	0	0	0	13945	1174	41	2	5102	2	SBF1	22	50904848	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	18996	50904848	399718	4230	23080										
NCAPH2	0	genome.wustl.edu	37	chr22	50960202	50960202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgtgcccccctgtgtggagGaggctctgggacagaagcgc	16	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50960202	50960202	G	A	SNP	NCAPH2	ENST00000299821	human	ensembl	69_37n	1	known	missense	c.1033	p.E345K	0.998	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	50	0	0	51	27	34.62	-	-	-	A	50960202	G	A	50960202	3	1	240	1	0	0	0	0	1	0	0	0	10282	1175	41	2	1118	2	NCAPH2	22	50960202	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	55354	50960202	344364	4231	23081										
KLHDC7B	0	genome.wustl.edu	37	chr22	50986767	50986767	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caggtacagggggcctggttGaggctggaggtcagccacag	18	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	50986767	50986767	G	A	SNP	KLHDC7B	ENST00000395676	human	ensembl	69_37n	1	known	missense	c.172	p.E58K	0.000	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487	18	0	0	38	11	22.45	-	-	-	A	50986767	G	A	50986767	3	1	240	1	0	0	0	0	1	0	0	0	8414	1291	45	2	174	2	KLHDC7B	22	50986767	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	26565	50986767	317799	4232	23082										
SHANK3	0	genome.wustl.edu	37	chr22	51160355	51160355	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaggctgacacacgcagctCcagcgacccccacctggaga	12	16	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	22	51160355	51160355	C	G	SNP	SHANK3	ENST00000262795	human	ensembl	69_37n	1	known	missense	c.4142	p.S1381C	1.000	NULL	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	13	0	0	10	7	41.18	-	-	-	G	51160355	C	G	51160355	3	3	240	1	0	0	0	0	1	0	0	0	14355	855	30	2	4228	2	SHANK3	22	51160355	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	173588	51160355	144211	4233	23083										
PPP2R3B	0	genome.wustl.edu	37	chrX	299558	299558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgctcgtggtcgaggtacttCtcgatgttgaagaaggtgtc	14	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	299558	299558	C	G	SNP	PPP2R3B	ENST00000390665	human	ensembl	69_37n	-1	known	missense	c.1425	p.E475D	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3B	HGNC	ENSG00000167393	111	0	0	109	43	28.29	-	-	-	G	299558	C	G	299558	3	3	240	1	0	0	0	0	1	0	0	0	12466	912	32	2	314	2	PPP2R3B	23	299558	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09		299558	154971002	4234	23084										
PPP2R3B	0	genome.wustl.edu	37	chrX	299630	299630	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggtcctgcagcgtgatcttCcctgcggggaggggagtgcg	18	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	299630	299630	C	T	SNP	PPP2R3B	ENST00000390665	human	ensembl	69_37n	-1	known	silent	c.1353	p.G451	0.995	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3B	HGNC	ENSG00000167393	64	0	0	87	19	17.92	-	-	-	T	299630	C	T	299630	2	4	240	1	0	0	0	0	0	0	0	1	12466	869	30	2		2	PPP2R3B	23	299630	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	72	299630	154970930	4235	23085										
DHRSX	0	genome.wustl.edu	37	chrX	2184966	2184966	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatccatctctggttttcctCtgagggaccatcatcacccc	6	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	2184966	2184966	C	T	SNP	DHRSX	ENST00000334651	human	ensembl	69_37n	-1	known	silent	c.411	p.Q137	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084	172	0	0	200	59	22.78	-	-	-	T	2184966	C	T	2184966	2	4	240	1	0	0	0	0	0	0	0	1	4535	912	32	2		2	DHRSX	23	2184966	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1885336	2184966	153085594	4236	23086										
GYG2	0	genome.wustl.edu	37	chrX	2779626	2779626	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggtgttggagagccgtgtGaaaattcaacacccagtgcg	13	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	2779626	2779626	G	A	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	missense	c.994	p.E332K	0.015	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	100	0	0	111	21	15.91	-	-	-	A	2779626	G	A	2779626	3	1	240	1	0	0	0	0	1	0	0	0	6957	1291	45	2	1024	2	GYG2	23	2779626	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	594660	2779626	152490934	4237	23087										
GYG2	0	genome.wustl.edu	37	chrX	2779692	2779692	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgggttctaaccagcctgctCagggccttccggagccgacc	12	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	2779692	2779692	C	T	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	nonsense	c.1060	p.Q354*	0.002	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	76	0	0	84	22	20.75	-	-	-	T	2779692	C	T	2779692	4	4	240	1	0	0	0	0	0	1	0	0	6957	827	29	2	1090	2	GYG2	23	2779692	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	66	2779692	152490868	4238	23088										
ARSE	0	genome.wustl.edu	37	chrX	2853180	2853180	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccatagcaggcaccggctCcctctggctggaacacaggc	11	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	2853180	2853180	C	G	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	missense	c.1538	p.G513A	0.885	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	51	0	0	69	20	22.47	-	-	-	G	2853180	C	G	2853180	3	3	240	1	0	0	0	0	1	0	0	0	994	855	30	2	310	2	ARSE	23	2853180	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	73488	2853180	152417380	4239	23089										
MXRA5	0	genome.wustl.edu	37	chrX	3229461	3229461	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggccacacagtccactttCaggtcacccccgtagaagac	9	15	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	3229461	3229461	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.6783	p.L2261	0.433	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	47	0	0	48	13	21.31	-	-	-	T	3229461	C	T	3229461	2	4	240	1	0	0	0	0	0	0	0	1	10075	813	29	2		2	MXRA5	23	3229461	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	376281	3229461	152041099	4240	23090										
MXRA5	0	genome.wustl.edu	37	chrX	3238649	3238649	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagtagccattgaattggtCagttcttcggtcagtaaact	11	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	3238649	3238649	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5077	p.D1693N	0.003	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	90	0	0	78	43	35.54	-	-	-	T	3238649	C	T	3238649	3	4	240	1	0	0	0	0	1	0	0	0	10075	826	29	2	3421	2	MXRA5	23	3238649	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9188	3238649	152031911	4241	23091										
MXRA5	0	genome.wustl.edu	37	chrX	3240107	3240107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggtattaactgtgttatCcacccaagctgtaggaacca	11	9	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	3240107	3240107	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.3619	p.D1207N	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	141	0	0	160	43	21.18	-	-	-	T	3240107	C	T	3240107	3	4	240	1	0	0	0	0	1	0	0	0	10075	855	30	2	4879	2	MXRA5	23	3240107	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1458	3240107	152030453	4242	23092										
PRKX	0	genome.wustl.edu	37	chrX	3539329	3539329	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctaatcgccttgttctgtCaaccacgagcagtttcttaa	6	12	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	3539329	3539329	C	T	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.844	p.D282N	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	138	0	0	144	34	18.99	-	-	-	T	3539329	C	T	3539329	3	4	240	1	0	0	0	0	1	0	0	0	12608	826	29	2	244	2	PRKX	23	3539329	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	299222	3539329	151731231	4243	23093										
VCX3B	0	genome.wustl.edu	37	chrX	8434325	8434325	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgagatggaagaaccactGagtcaggagagccaggtgga	16	7	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	8434325	8434325	G	T	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	silent	c.552	p.L184	0.004	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	227	0	0	191	53	21.72	-	-	-	T	8434325	G	T	8434325	2	4	240	1	0	0	0	0	0	0	0	1	17242	1277	45	2		2	VCX3B	23	8434325	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4894996	8434325	146836235	4244	23094										
SHROOM2	0	genome.wustl.edu	37	chrX	9864400	9864400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcctgcccagaagcaagctCttcacggaatcccgagagac	11	14	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	9864400	9864400	C	G	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2452	p.L818V	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	48	0	0	44	18	29.03	-	-	-	G	9864400	C	G	9864400	3	3	240	1	0	0	0	0	1	0	0	0	14383	913	32	2	2466	2	SHROOM2	23	9864400	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1430075	9864400	145406160	4245	23095										
SHROOM2	0	genome.wustl.edu	37	chrX	9900720	9900720	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccccgaaggccactgtctgtGagcgtggaagccagcatgtg	14	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	9900720	9900720	G	C	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.3397	p.E1133Q	0.994	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	38	0	0	46	16	25.81	-	-	-	C	9900720	G	C	9900720	3	2	240	1	0	0	0	0	1	0	0	0	14383	1291	45	2	3419	2	SHROOM2	23	9900720	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	36320	9900720	145369840	4246	23096										
SHROOM2	0	genome.wustl.edu	37	chrX	9900768	9900768	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acgcatcacgtcctctgccaGaagcactgctccctcccaag	7	18	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	9900768	9900768	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.3445	p.E1149K	0.138	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	39	0	0	35	13	27.08	-	-	-	A	9900768	G	A	9900768	3	1	240	1	0	0	0	0	1	0	0	0	14383	943	33	2	3467	2	SHROOM2	23	9900768	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	48	9900768	145369792	4247	23097										
SHROOM2	0	genome.wustl.edu	37	chrX	9914783	9914783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggagctcaaggagaacctgGaccgccgcgagcgcatcgtc	14	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	9914783	9914783	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.4657	p.D1553N	1.000	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	52	0	0	47	15	24.19	-	-	-	A	9914783	G	A	9914783	3	1	240	1	0	0	0	0	1	0	0	0	14383	1174	41	2	4695	2	SHROOM2	23	9914783	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	14015	9914783	145355777	4248	23098										
MSL3	0	genome.wustl.edu	37	chrX	11786799	11786799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaagaactaatgaaataaacGaggtaaagaatgtttgatgt	10	2	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	11786799	11786799	G	A	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	missense	c.1279	p.E427K	1.000	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	119	0	0	105	23	17.97	-	-	-	A	11786799	G	A	11786799	3	1	240	1	0	0	0	0	1	0	0	0	9951	1059	37	1	1397	1	MSL3	23	11786799	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1872016	11786799	143483761	4249	23099										
MSL3	0	genome.wustl.edu	37	chrX	11790741	11790741	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcctttatttttaatgcagtGaaacttccagaaatccttgg	7	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	11790741	11790741	G	A	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	silent	c.1383	p.V461	0.987	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	152	0	0	118	28	19.18	-	-	-	A	11790741	G	A	11790741	2	1	240	1	0	0	0	0	0	0	0	1	9951	1304	45	2		2	MSL3	23	11790741	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3942	11790741	143479819	4250	23100										
FRMPD4	0	genome.wustl.edu	37	chrX	12736042	12736042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaaggaaaagcaagctggccGatggtgaggggaaggcaccc	16	8	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	12736042	12736042	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3097	p.D1033N	0.736	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	61	0	0	46	14	23.33	-	-	-	A	12736042	G	A	12736042	3	1	240	1	0	0	0	0	1	0	0	0	6108	1058	37	1	3159	1	FRMPD4	23	12736042	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	945301	12736042	142534518	4251	23101										
TLR7	0	genome.wustl.edu	37	chrX	12904084	12904084	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccgcctagcttacagcttCtcagccttgaggccaacaac	7	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	12904084	12904084	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.457	p.L153F	1.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	29	0	0	41	7	14.58	-	-	-	T	12904084	C	T	12904084	3	4	240	1	0	0	0	0	1	0	0	0	16051	913	32	2	463	2	TLR7	23	12904084	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	168042	12904084	142366476	4252	23102										
FAM9C	0	genome.wustl.edu	37	chrX	13061257	13061257	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aacactttaccccgtgtgttCatctgtttcagcaaaagatc	6	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	13061257	13061257	C	T	SNP	FAM9C	ENST00000333995	human	ensembl	69_37n	-1	known	missense	c.172	p.E58K	0.037	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9C	HGNC	ENSG00000187268	161	0	0	123	23	15.75	-	-	-	T	13061257	C	T	13061257	3	4	240	1	0	0	0	0	1	0	0	0	5707	835	29	2	348	2	FAM9C	23	13061257	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157173	13061257	142209303	4253	23103										
TCEANC	0	genome.wustl.edu	37	chrX	13681278	13681278	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accctttattcaaagaacatCaaaaaatataaaacttgcat	2	8	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	13681278	13681278	C	G	SNP	TCEANC	ENST00000467590	human	ensembl	69_37n	1	known	nonsense	c.416	p.S139*	0.401	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCEANC	HGNC	ENSG00000176896	49	0	0	26	9	25.71	-	-	-	G	13681278	C	G	13681278	4	3	240	1	0	0	0	0	0	1	0	0	15773	816	29	2	747	2	TCEANC	23	13681278	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	620021	13681278	141589282	4254	23104										
FIGF	0	genome.wustl.edu	37	chrX	15381243	15381243	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacctaccttttagtgtttCaatgtcatagaaagttgccg	7	9	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	15381243	15381243	C	T	SNP	FIGF	ENST00000297904	human	ensembl	69_37n	-1	known	missense	c.289	p.E97K	1.000	pfscan_PD_growth_factor	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	FIGF	HGNC	ENSG00000165197	49	0	0	62	8	11.43	-	-	-	T	15381243	C	T	15381243	3	4	240	1	0	0	0	0	1	0	0	0	5935	835	29	2	799	2	FIGF	23	15381243	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1699965	15381243	139889317	4255	23105										
BMX	0	genome.wustl.edu	37	chrX	15544190	15544190	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccctgagtcaagttcatctGaagaagaggaaaacctggat	10	8	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	15544190	15544190	G	T	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	nonsense	c.856	p.E286*	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	177	0	0	134	35	20.71	-	-	-	T	15544190	G	T	15544190	4	4	240	1	0	0	0	0	0	1	0	0	1478	1291	45	2	886	2	BMX	23	15544190	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	162947	15544190	139726370	4256	23106										
BEND2	0	genome.wustl.edu	37	chrX	18198702	18198702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actgtccaataaagttgagcGattcattgtgttgacgctgt	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	18198702	18198702	G	A	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	missense	c.1357	p.R453C	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	316	0	0	306	78	20.26	-	-	-	A	18198702	G	A	18198702	3	1	240	1	0	0	0	0	1	0	0	0	1402	1058	37	1	1092	1	BEND2	23	18198702	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2654512	18198702	137071858	4257	23107										
CDKL5	0	genome.wustl.edu	37	chrX	18671596	18671596	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatgagggaagccctgattCacagggcccaggtaaaccaa	11	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	18671596	18671596	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.3025	p.H1009Y	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	53	0	0	60	14	18.92	-	-	-	T	18671596	C	T	18671596	3	4	240	1	0	0	0	0	1	0	0	0	3186	826	29	2	3103	2	CDKL5	23	18671596	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	472894	18671596	136598964	4258	23108										
PPEF1	0	genome.wustl.edu	37	chrX	18822166	18822166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtctcatgaatgtaagcccGaagggtatgaaatctgtcat	11	7	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	18822166	18822166	G	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1222	p.E408K	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	92	0	0	99	16	13.91	-	-	-	A	18822166	G	A	18822166	3	1	240	1	0	0	0	0	1	0	0	0	12380	1059	37	1	1264	1	PPEF1	23	18822166	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	150570	18822166	136448394	4259	23109										
GPR64	0	genome.wustl.edu	37	chrX	19022967	19022967	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaacgtcagagccatcatttGagcaggcagcacagatgtcc	11	11	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	19022967	19022967	G	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	nonsense	c.1870	p.Q624*	0.963	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	79	0	0	89	18	16.82	-	-	-	A	19022967	G	A	19022967	4	1	240	1	0	0	0	0	0	1	0	0	6755	1299	45	2	1211	2	GPR64	23	19022967	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	200801	19022967	136247593	4260	23110										
GPR64	0	genome.wustl.edu	37	chrX	19026100	19026100	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgagcagcagttttacctGaaacaaagcaggtgtttcaa	10	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	19026100	19026100	G	C	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.1564	p.Q522E	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	64	0	0	68	16	19.05	-	-	-	C	19026100	G	C	19026100	3	2	240	1	0	0	0	0	1	0	0	0	6755	1299	45	2	1533	2	GPR64	23	19026100	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3133	19026100	136244460	4261	23111										
GPR64	0	genome.wustl.edu	37	chrX	19042054	19042054	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agggtttgcagggttttgttGagctctgagcgtctgtaata	14	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	19042054	19042054	G	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	silent	c.483	p.L161	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	182	0	0	127	68	34.87	-	-	-	A	19042054	G	A	19042054	2	1	240	1	0	0	0	0	0	0	0	1	6755	1277	45	2		2	GPR64	23	19042054	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	15954	19042054	136228506	4262	23112										
MAP3K15	0	genome.wustl.edu	37	chrX	19433296	19433296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaccagaagttcagccgctCttgcctgggcgagtgttcaa	11	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	19433296	19433296	C	G	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.1519	p.E507Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	79	0	0	71	17	19.32	-	-	-	G	19433296	C	G	19433296	3	3	240	1	0	0	0	0	1	0	0	0	9320	922	32	2	2502	2	MAP3K15	23	19433296	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	391242	19433296	135837264	4263	23113										
RPS6KA3	0	genome.wustl.edu	37	chrX	20183077	20183077	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaagaccattttccgctctCagctgttttgcaaagccaaa	7	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	20183077	20183077	C	T	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	silent	c.1704	p.L568	0.876	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	50	0	0	50	14	21.88	-	-	-	T	20183077	C	T	20183077	2	4	240	1	0	0	0	0	0	0	0	1	13738	813	29	2		2	RPS6KA3	23	20183077	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	749781	20183077	135087483	4264	23114										
CNKSR2	0	genome.wustl.edu	37	chrX	21450881	21450881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaaacgactttctgacctCagttgtggatctgattggag	11	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	21450881	21450881	C	T	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.380	p.S127L	0.995	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	102	0	0	75	29	27.88	-	-	-	T	21450881	C	T	21450881	3	4	240	1	0	0	0	0	1	0	0	0	3637	838	29	2	390	2	CNKSR2	23	21450881	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1267804	21450881	133819679	4265	23115										
CNKSR2	0	genome.wustl.edu	37	chrX	21627213	21627213	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgcgccagtccttatgtgGaagcaaaacatagccgactt	10	10	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	21627213	21627213	G	T	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	nonsense	c.2170	p.E724*	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	35	0	0	35	10	22.22	-	-	-	T	21627213	G	T	21627213	4	4	240	1	0	0	0	0	0	1	0	0	3637	1175	41	2	2248	2	CNKSR2	23	21627213	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	176332	21627213	133643347	4266	23116										
CNKSR2	0	genome.wustl.edu	37	chrX	21667121	21667121	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatgaaaaactacaccggctGagaattctcaaaagcacttt	6	9	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	21667121	21667121	G	A	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	silent	c.2865	p.L955	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	43	0	0	45	9	16.67	-	-	-	A	21667121	G	A	21667121	2	1	240	1	0	0	0	0	0	0	0	1	3637	1277	45	2		2	CNKSR2	23	21667121	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	39908	21667121	133603439	4267	23117										
CNKSR2	0	genome.wustl.edu	37	chrX	21670583	21670583	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgagtatttcttctgaagtaGatgtaatcacttcctctcta	6	8	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	21670583	21670583	G	C	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.3049	p.D1017H	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	165	0	0	122	36	22.78	-	-	-	C	21670583	G	C	21670583	3	2	240	1	0	0	0	0	1	0	0	0	3637	942	33	2	3144	2	CNKSR2	23	21670583	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3462	21670583	133599977	4268	23118										
MBTPS2	0	genome.wustl.edu	37	chrX	21871566	21871566	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcatttgttgatctgttCaccactcatttgcaacttat	7	9	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	21871566	21871566	C	T	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	silent	c.615	p.F205	1.000	pfam_Peptidase_M50,prints_Pept_M50_SREBP	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	273	0	0	254	63	19.87	-	-	-	T	21871566	C	T	21871566	2	4	240	1	0	0	0	0	0	0	0	1	9433	825	29	2		2	MBTPS2	23	21871566	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	200983	21871566	133398994	4269	23119										
SMS	0	genome.wustl.edu	37	chrX	22010730	22010730	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttaggggaactgtgtcaatCtgacagaagcactgtcgctc	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	22010730	22010730	C	T	SNP	SMS	ENST00000404933	human	ensembl	69_37n	1	known	silent	c.961	p.L321	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	-	no_errors	SMS	HGNC	ENSG00000102172	174	0	0	153	34	18.18	-	-	-	T	22010730	C	T	22010730	2	4	240	1	0	0	0	0	0	0	0	1	14902	912	32	2		2	SMS	23	22010730	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	139164	22010730	133259830	4270	23120										
CXorf58	0	genome.wustl.edu	37	chrX	23953447	23953447	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tattcagagtctggagtgatCtcaaaccgtctacgaaatga	9	8	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	23953447	23953447	C	G	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.690	p.I230M	0.702	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	63	0	0	38	46	54.12	-	-	-	G	23953447	C	G	23953447	3	3	240	1	0	0	0	0	1	0	0	0	4145	903	32	2	712	2	CXorf58	23	23953447	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1942717	23953447	131317113	4271	23121										
CXorf58	0	genome.wustl.edu	37	chrX	23953535	23953535	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accagctacggattgtttctGaaattaggtaaaacagattc	8	7	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	23953535	23953535	G	A	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	0.474	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	34	0	0	38	7	15.56	-	-	-	A	23953535	G	A	23953535	3	1	240	1	0	0	0	0	1	0	0	0	4145	1291	45	2	800	2	CXorf58	23	23953535	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	88	23953535	131317025	4272	23122										
CXorf58	0	genome.wustl.edu	37	chrX	23957414	23957414	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactatcatctccactccatCttttgacattgtgaaaacta	3	11	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	23957414	23957414	C	G	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.993	p.I331M	0.000	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	125	0	0	114	26	18.57	-	-	-	G	23957414	C	G	23957414	3	3	240	1	0	0	0	0	1	0	0	0	4145	903	32	2	1023	2	CXorf58	23	23957414	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3879	23957414	131313146	4273	23123										
ZFX	0	genome.wustl.edu	37	chrX	24197701	24197701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttggacatgttggacatgttGaacatgtggttcatgatagt	12	4	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	24197701	24197701	G	A	SNP	ZFX	ENST00000540034	human	ensembl	69_37n	1	known	missense	c.577	p.E193K	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	115	0	0	145	32	18.08	-	-	-	A	24197701	G	A	24197701	3	1	240	1	0	0	0	0	1	0	0	0	17757	1291	45	2	466	2	ZFX	23	24197701	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	240287	24197701	131072859	4274	23124										
POLA1	0	genome.wustl.edu	37	chrX	24839691	24839691	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagatactgtgtcatatgtCatctgtcaggtaaactattg	10	6	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	24839691	24839691	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	silent	c.3552	p.V1184	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	54	0	0	60	16	21.05	-	-	-	T	24839691	C	T	24839691	2	4	240	1	0	0	0	0	0	0	0	1	12261	813	29	2		2	POLA1	23	24839691	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	641990	24839691	130430869	4275	23125										
POLA1	0	genome.wustl.edu	37	chrX	24844657	24844657	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcccagcagatccacccagtCgtggctcggatctgtgaacc	11	15	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	24844657	24844657	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	silent	c.3675	p.V1225	0.279	pfam_DNA-dir_DNA_pol_B_multi_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	95	0	0	74	25	25.25	-	-	-	T	24844657	C	T	24844657	2	4	240	1	0	0	0	0	0	0	0	1	12261	871	31	1		1	POLA1	23	24844657	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4966	24844657	130425903	4276	23126										
MAGEB10	0	genome.wustl.edu	37	chrX	27840228	27840228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagtgcccaacagtgatcctCcacgctatcaattcctatgg	7	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	27840228	27840228	C	T	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	missense	c.805	p.P269S	0.141	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	107	0	0	79	48	37.8	-	-	-	T	27840228	C	T	27840228	3	4	240	1	0	0	0	0	1	0	0	0	9244	855	30	2	807	2	MAGEB10	23	27840228	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2995571	27840228	127430332	4277	23127										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29301120	29301120	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttggtgggagagcctgttCgaatcaaatgtgcactcttt	11	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	29301120	29301120	C	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	nonsense	c.148	p.R50*	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	162	0	0	108	88	44.9	-	-	-	T	29301120	C	T	29301120	4	4	240	1	0	0	0	0	0	1	0	0	7715	876	31	1	154	1	IL1RAPL1	23	29301120	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1460892	29301120	125969440	4278	23128										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29972752	29972752	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaatcctacctgatatgcttGaaaagcattatggatataag	7	6	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	29972752	29972752	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.1315	p.E439K	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	76	0	0	55	18	24.32	-	-	-	A	29972752	G	A	29972752	3	1	240	1	0	0	0	0	1	0	0	0	7715	1291	45	2	1349	2	IL1RAPL1	23	29972752	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	671632	29972752	125297808	4279	23129										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29973317	29973317	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaggggctggagcatctttGagctggaaaccagacttcga	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	29973317	29973317	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.1471	p.E491K	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	52	0	0	40	28	41.18	-	-	-	A	29973317	G	A	29973317	3	1	240	1	0	0	0	0	1	0	0	0	7715	1291	45	2	1509	2	IL1RAPL1	23	29973317	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	565	29973317	125297243	4280	23130										
DMD	0	genome.wustl.edu	37	chrX	31697677	31697677	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaaggtgttcttgtacttCatcccactgattctgaattc	7	10	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	31697677	31697677	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.7687	p.E2563K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	200	1	0.5	162	56	25.69	-	-	-	T	31697677	C	T	31697677	3	4	240	1	0	0	0	0	1	0	0	0	4616	835	29	2	3626	2	DMD	23	31697677	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1724360	31697677	123572883	4281	23131										
DMD	0	genome.wustl.edu	37	chrX	32382737	32382737	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgctggggtttctttttctCtgattcatccaaaagtgtgt	9	7	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	32382737	32382737	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5116	p.E1706K	0.975	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	297	0	0	280	62	18.08	-	-	-	T	32382737	C	T	32382737	3	4	240	1	0	0	0	0	1	0	0	0	4616	922	32	2	6265	2	DMD	23	32382737	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	685060	32382737	122887823	4282	23132										
DMD	0	genome.wustl.edu	37	chrX	32472826	32472826	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatctggagttttatattCaaaatctctctcaagatact	4	8	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	32472826	32472826	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.3556	p.E1186Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	111	0	0	67	41	37.96	-	-	-	G	32472826	C	G	32472826	3	3	240	1	0	0	0	0	1	0	0	0	4616	835	29	2	7960	2	DMD	23	32472826	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	90089	32472826	122797734	4283	23133										
CXorf22	0	genome.wustl.edu	37	chrX	35969363	35969363	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctggaatgcatacactttGgtcctgttttcttcggatca	10	9	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	35969363	35969363	G	C	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.772	p.G258R	1.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	96	0	0	77	55	41.67	-	-	-	C	35969363	G	C	35969363	3	2	240	1	0	0	0	0	1	0	0	0	4133	1348	47	4	790	4	CXorf22	23	35969363	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3496537	35969363	119301197	4284	23134										
CXorf22	0	genome.wustl.edu	37	chrX	35989991	35989991	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatgattttttacaggttctCaaaggacttaaatcagaacc	6	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	35989991	35989991	C	G	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	silent	c.2163	p.L721	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	47	0	0	33	11	25	-	-	-	G	35989991	C	G	35989991	2	3	240	1	0	0	0	0	0	0	0	1	4133	813	29	2		2	CXorf22	23	35989991	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	20628	35989991	119280569	4285	23135										
FAM47C	0	genome.wustl.edu	37	chrX	37028867	37028867	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggagcctcccaagactcgtcGagtgtccagtctccgcctgg	12	15	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	37028867	37028867	G	C	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.2384	p.R795P	0.003	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	55	0	0	48	18	27.27	-	-	-	C	37028867	G	C	37028867	3	2	240	1	0	0	0	0	1	0	0	0	5617	1058	37	3	2386	3	FAM47C	23	37028867	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1038876	37028867	118241693	4286	23136										
CYBB	0	genome.wustl.edu	37	chrX	37664367	37664367	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acacccttcgcatccattctCaagtcagtctggtacaaata	5	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	37664367	37664367	C	T	SNP	CYBB	ENST00000378588	human	ensembl	69_37n	1	known	silent	c.1260	p.L420	1.000	pfam_Fe_red_NAD-bd_6,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168	154	1	0.65	145	60	29.27	-	-	-	T	37664367	C	T	37664367	2	4	240	1	0	0	0	0	0	0	0	1	4164	813	29	2		2	CYBB	23	37664367	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	635500	37664367	117606193	4287	23137										
RPGR	0	genome.wustl.edu	37	chrX	38145107	38145107	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttttcttctccttccccctCcttttccctttcttctcctt	1	18	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	38145107	38145107	C	G	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.3145	p.E1049Q	0.020	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	221	0	0	282	70	19.89	-	-	-	G	38145107	C	G	38145107	3	3	240	1	0	0	0	0	1	0	0	0	13634	864	30	2	876	2	RPGR	23	38145107	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	480740	38145107	117125453	4288	23138										
RPGR	0	genome.wustl.edu	37	chrX	38145215	38145215	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cccttcctcttcttcctcccCttctccctccccttcttcct	0	24	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	38145215	38145215	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.3037	p.G1013W	0.911	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	63	0	0	88	28	24.14	-	-	-	A	38145215	C	A	38145215	3	1	240	1	0	0	0	0	1	0	0	0	13634	681	24	4	984	4	RPGR	23	38145215	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	108	38145215	117125345	4289	23139										
RPGR	0	genome.wustl.edu	37	chrX	38176595	38176595	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaaagctgaatggtaatatCcacaagagatccaggagaca	9	8	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	38176595	38176595	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.593	p.G198V	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	132	0	0	89	15	14.42	-	-	-	A	38176595	C	A	38176595	3	1	240	1	0	0	0	0	1	0	0	0	13634	855	30	2	3464	2	RPGR	23	38176595	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	31380	38176595	117093965	4290	23140										
OTC	0	genome.wustl.edu	37	chrX	38262976	38262976	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgaaattcggaatgcaccttCaggcagctactccaaaggta	9	11	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	38262976	38262976	C	T	SNP	OTC	ENST00000039007	human	ensembl	69_37n	1	known	nonsense	c.646	p.Q216*	0.728	pfam_Asp_carbamoyltransf_Asp/Orn-bd,superfamily_Asp/Orn_carbamoylTrfase,tigrfam_Orn/put_carbamltrans	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473	59	0	0	65	20	23.53	-	-	-	T	38262976	C	T	38262976	4	4	240	1	0	0	0	0	0	1	0	0	11374	827	29	2	668	2	OTC	23	38262976	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	86381	38262976	117007584	4291	23141										
MED14	0	genome.wustl.edu	37	chrX	40542223	40542223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagagccttttgggtttcctCagttatacccttacagggag	10	10	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	40542223	40542223	C	T	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.2083	p.E695K	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	75	0	0	74	21	22.11	-	-	-	T	40542223	C	T	40542223	3	4	240	1	0	0	0	0	1	0	0	0	9503	835	29	2	2341	2	MED14	23	40542223	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2279247	40542223	114728337	4292	23142										
USP9X	0	genome.wustl.edu	37	chrX	40990750	40990750	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttttgccgaaaggggaattaGaagtgcttttagaagctgct	12	5	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	40990750	40990750	G	C	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.283	p.E95Q	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	186	0	0	164	34	17.17	-	-	-	C	40990750	G	C	40990750	3	2	240	1	0	0	0	0	1	0	0	0	17187	943	33	2	293	2	USP9X	23	40990750	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	448527	40990750	114279810	4293	23143										
USP9X	0	genome.wustl.edu	37	chrX	41048645	41048645	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaccttatgttttgccttGattccaacagccttagatgc	7	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	41048645	41048645	G	C	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.3894	p.L1298F	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	221	0	0	201	49	19.6	-	-	-	C	41048645	G	C	41048645	3	2	240	1	0	0	0	0	1	0	0	0	17187	1281	45	2	3992	2	USP9X	23	41048645	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	57895	41048645	114221915	4294	23144										
DDX3X	0	genome.wustl.edu	37	chrX	41206171	41206171	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttactaaggatttgttggatCttcttgttgaagctaaacaa	8	5	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	41206171	41206171	C	A	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.1675	p.L559I	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	129	1	0.77	103	27	20.77	-	-	-	A	41206171	C	A	41206171	3	1	240	1	0	0	0	0	1	0	0	0	4389	913	32	2	1733	2	DDX3X	23	41206171	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	157526	41206171	114064389	4295	23145										
MAOB	0	genome.wustl.edu	37	chrX	43652716	43652716	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaactatacacttgatgactGaacccaaaggcacacgagtg	8	10	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	43652716	43652716	G	A	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	missense	c.878	p.S293L	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	65	0	0	70	16	18.39	-	-	-	A	43652716	G	A	43652716	3	1	240	1	0	0	0	0	1	0	0	0	9297	1294	45	2	716	2	MAOB	23	43652716	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2446545	43652716	111617844	4296	23146										
EFHC2	0	genome.wustl.edu	37	chrX	44101449	44101449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttacggagagaatcctcttCagaaccaaaaccgttgtaag	9	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	44101449	44101449	C	G	SNP	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	missense	c.1198	p.E400Q	1.000	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	148	0	0	142	39	21.55	-	-	-	G	44101449	C	G	44101449	3	3	240	1	0	0	0	0	1	0	0	0	4982	835	29	2	1083	2	EFHC2	23	44101449	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	448733	44101449	111169111	4297	23147										
KDM6A	0	genome.wustl.edu	37	chrX	44820632	44820632	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcttattggaagattatcCaaaaggtaatttttttcttg	6	6	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	44820632	44820632	C	G	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.329	p.P110R	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	155	0	0	146	27	15.61	-	-	-	G	44820632	C	G	44820632	3	3	240	1	0	0	0	0	1	0	0	0	8190	594	21	4	339	4	KDM6A	23	44820632	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	719183	44820632	110449928	4298	23148										
ZNF673	0	genome.wustl.edu	37	chrX	46332439	46332439	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aatggaagctatgtaagaaaGaaagatgatggatgtaaagc	12	2	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	46332439	46332439	G	C	SNP	ZNF673	ENST00000344302	human	ensembl	69_37n	1	known	missense	c.508	p.E170Q	0.805	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF673	HGNC	ENSG00000147121	115	0	0	139	29	17.26	-	-	-	C	46332439	G	C	46332439	3	2	240	1	0	0	0	0	1	0	0	0	18176	943	33	2	570	2	ZNF673	23	46332439	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1511807	46332439	108938121	4299	23149										
PHF16	0	genome.wustl.edu	37	chrX	46917722	46917722	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctctcctgacagcagctcatCtgttcacagtataaggaaca	7	12	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	46917722	46917722	C	G	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	missense	c.1715	p.S572C	0.982	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	133	0	0	112	26	18.84	-	-	-	G	46917722	C	G	46917722	3	3	240	1	0	0	0	0	1	0	0	0	11901	913	32	2	1753	2	PHF16	23	46917722	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	585283	46917722	108352838	4300	23150										
RBM10	0	genome.wustl.edu	37	chrX	47035949	47035949	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcgatgcactacagtgacccCaagcccaagatcaatgagga	9	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	47035949	47035949	C	G	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	silent	c.627	p.P209	1.000	pfscan_RRM_dom	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	82	0	0	84	21	20	-	-	-	G	47035949	C	G	47035949	2	3	240	1	0	0	0	0	0	0	0	1	13194	581	21	4		4	RBM10	23	47035949	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	118227	47035949	108234611	4301	23151										
UBA1	0	genome.wustl.edu	37	chrX	47060715	47060715	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagaggaaatgatcctcacaGattccaatggggagcagcca	12	9	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	47060715	47060715	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.628	p.D210N	1.000	superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	97	0	0	91	23	20.18	-	-	-	A	47060715	G	A	47060715	3	1	240	1	0	0	0	0	1	0	0	0	16924	942	33	2	650	2	UBA1	23	47060715	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	24766	47060715	108209845	4302	23152										
USP11	0	genome.wustl.edu	37	chrX	47100714	47100714	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagctcaccgagtacttcctCaacaactgctacctggagga	8	14	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	47100714	47100714	C	G	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	silent	c.1014	p.L338	0.957	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	61	0	0	63	14	18.18	-	-	-	G	47100714	C	G	47100714	2	3	240	1	0	0	0	0	0	0	0	1	17139	813	29	2		2	USP11	23	47100714	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39999	47100714	108169846	4303	23153										
ZNF182	0	genome.wustl.edu	37	chrX	47836625	47836625	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaggacactcaaagggtctCtctcctgtatgagttcgcaa	9	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	47836625	47836625	C	G	SNP	ZNF182	ENST00000305127	human	ensembl	69_37n	-1	known	missense	c.861	p.E287D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118	102	0	0	61	62	50.41	-	-	-	G	47836625	C	G	47836625	3	3	240	1	0	0	0	0	1	0	0	0	17846	912	32	2	1062	2	ZNF182	23	47836625	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	735911	47836625	107433935	4304	23154										
ZNF630	0	genome.wustl.edu	37	chrX	47920250	47920250	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atcacatccctatgcagggtCttctgagcaggattcaactg	9	11	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	47920250	47920250	C	T	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	silent	c.90	p.K30	0.485	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	105	0	0	47	16	25.4	-	-	-	T	47920250	C	T	47920250	2	4	240	1	0	0	0	0	0	0	0	1	18150	912	32	2		2	ZNF630	23	47920250	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	83625	47920250	107350310	4305	23155										
SSX1	0	genome.wustl.edu	37	chrX	48125765	48125765	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tggacccacagactgcgtgaGagaaagcagctggtgattta	13	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	48125765	48125765	G	C	SNP	SSX1	ENST00000376919	human	ensembl	69_37n	1	known	missense	c.510	p.E170D	0.001	pfam_SSXRD_motif	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX1	HGNC	ENSG00000126752	264	0	0	232	55	19.16	-	-	-	C	48125765	G	C	48125765	3	2	240	1	0	0	0	0	1	0	0	0	15294	933	33	2	532	2	SSX1	23	48125765	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	205515	48125765	107144795	4306	23156										
TBC1D25	0	genome.wustl.edu	37	chrX	48418497	48418497	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acctgcaagaggcaggcgctGatgacctcttcttctgttac	10	12	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	48418497	48418497	G	C	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1201	p.D401H	0.997	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	19	0	0	24	8	25	-	-	-	C	48418497	G	C	48418497	3	2	240	1	0	0	0	0	1	0	0	0	15707	1290	45	2	1223	2	TBC1D25	23	48418497	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	292732	48418497	106852063	4307	23157										
RBM3	0	genome.wustl.edu	37	chrX	48434506	48434506	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggggaacatggtgcattcagGtcattttgtgtgggattcta	14	5	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	48434506	48434506	G	A	SNP	RBM3	ENST00000485213	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBM3	HGNC	ENSG00000102317	8	0	0	4	4	50	-	-	-	A	48434506	G	A	48434506	1	1	240	0	1	0	0	0	0	0	0	0	13212	1276	44	4		4	RBM3	23	48434506	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	16009	48434506	106836054	4308	23158										
HDAC6	0	genome.wustl.edu	37	chrX	48681410	48681410	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctaggttagctgagcggatGaccacacgagaaaagaaggt	13	8	0	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	48681410	48681410	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2643	p.M881I	0.003	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	52	0	0	43	10	18.87	-	-	-	A	48681410	G	A	48681410	3	1	240	1	0	0	0	0	1	0	0	0	7062	1290	45	2	2695	2	HDAC6	23	48681410	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	246904	48681410	106589150	4309	23159										
WDR45	0	genome.wustl.edu	37	chrX	48935539	48935539	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggctccacgttgtagatgcgCacacctgtctccatggcgca	11	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	48935539	48935539	C	G	SNP	WDR45	ENST00000322995	human	ensembl	69_37n	-1	known	silent	c.87	p.V29	0.989	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998	94	0	0	107	26	19.55	-	-	-	G	48935539	C	G	48935539	2	3	240	1	0	0	0	0	0	0	0	1	17394	697	25	4		4	WDR45	23	48935539	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	254129	48935539	106335021	4310	23160										
CACNA1F	0	genome.wustl.edu	37	chrX	49081268	49081268	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcgcacacatcggagcactGagatgcccaagggctgcatg	14	12	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	49081268	49081268	G	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	nonsense	c.1865	p.S622*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	52	0	0	52	11	17.46	-	-	-	T	49081268	G	T	49081268	4	4	240	1	0	0	0	0	0	1	0	0	2568	1294	45	2	4208	2	CACNA1F	23	49081268	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	145729	49081268	106189292	4311	23161										
PPP1R3F	0	genome.wustl.edu	37	chrX	49138468	49138468	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatcctgatgtccaggagtCagtgggtccactggtagccc	13	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	49138468	49138468	C	T	SNP	PPP1R3F	ENST00000471261	human	ensembl	69_37n	1	putative	nonsense	c.334	p.Q112*	1.000	NULL	pfam_CBM_21	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP1R3F	HGNC	ENSG00000049769	146	0	0	126	59	31.72	-	-	-	T	49138468	C	T	49138468	4	4	240	1	0	0	0	0	0	1	0	0	12452	838	29	2	1095	2	PPP1R3F	23	49138468	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	57200	49138468	106132092	4312	23162										
DGKK	0	genome.wustl.edu	37	chrX	50122992	50122992	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cactaacctccaaatgcactCgttcttccagtttcctgtaa	4	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50122992	50122992	C	G	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	156	0	0	158	30	15.96	-	-	-	G	50122992	C	G	50122992	1	3	240	0	1	0	0	0	0	0	0	0	4508	884	31	3		3	DGKK	23	50122992	RNA	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	984524	50122992	105147568	4313	23163										
DGKK	0	genome.wustl.edu	37	chrX	50135375	50135375	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaggcatcaatcagagataaGacccagctcacgctgccatc	8	13	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50135375	50135375	G	C	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.822	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	77	0	0	72	20	21.74	-	-	-	C	50135375	G	C	50135375	1	2	240	0	1	0	0	0	0	0	0	0	4508	929	33	2		2	DGKK	23	50135375	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	12383	50135375	105135185	4314	23164										
DGKK	0	genome.wustl.edu	37	chrX	50146136	50146136	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatgacacactgcacactGagagctgacaggcatgtttc	9	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50146136	50146136	G	A	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	56	0	0	71	25	25.77	-	-	-	A	50146136	G	A	50146136	1	1	240	0	1	0	0	0	0	0	0	0	4508	1299	45	2		2	DGKK	23	50146136	RNA	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	10761	50146136	105124424	4315	23165										
SHROOM4	0	genome.wustl.edu	37	chrX	50351126	50351126	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caagtccagtgctgggttctCaaggcaaggatggaaagggg	16	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50351126	50351126	C	G	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.3016	p.E1006Q	0.994	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	44	0	0	41	10	19.61	-	-	-	G	50351126	C	G	50351126	3	3	240	1	0	0	0	0	1	0	0	0	14385	835	29	2	1481	2	SHROOM4	23	50351126	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	204990	50351126	104919434	4316	23166										
SHROOM4	0	genome.wustl.edu	37	chrX	50376561	50376561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatgattggtctgtggcatGatatggttggtctgcggaat	14	4	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50376561	50376561	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.2512	p.H838Y	0.999	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	200	0	0	177	32	15.31	-	-	-	A	50376561	G	A	50376561	3	1	240	1	0	0	0	0	1	0	0	0	14385	1290	45	2	1993	2	SHROOM4	23	50376561	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	25435	50376561	104893999	4317	23167										
BMP15	0	genome.wustl.edu	37	chrX	50659264	50659264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagctgaggttactgcctCttcctcaaaacatagcgggc	9	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	50659264	50659264	C	T	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	1	known	missense	c.836	p.S279F	0.000	NULL	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	86	0	0	76	12	13.64	-	-	-	T	50659264	C	T	50659264	3	4	240	1	0	0	0	0	1	0	0	0	1463	913	32	2	842	2	BMP15	23	50659264	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	282703	50659264	104611296	4318	23168										
MAGED1	0	genome.wustl.edu	37	chrX	51644659	51644659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatctcaggttcagaaaaGagaccctcgtgactggactg	10	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	51644659	51644659	G	C	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	missense	c.2138	p.R713T	0.999	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	37	0	0	45	11	19.64	-	-	-	C	51644659	G	C	51644659	3	2	240	1	0	0	0	0	1	0	0	0	9254	942	33	2	2184	2	MAGED1	23	51644659	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	985395	51644659	103625901	4319	23169										
SPANXN5	0	genome.wustl.edu	37	chrX	52826372	52826372	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttctccccattggtgcttGaagtgggcttttccatgatt	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	52826372	52826372	G	C	SNP	SPANXN5	ENST00000375511	human	ensembl	69_37n	-1	known	nonsense	c.17	p.S6*	0.082	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN5	HGNC	ENSG00000204363	381	0	0	385	95	19.79	-	-	-	C	52826372	G	C	52826372	4	2	240	1	0	0	0	0	0	1	0	0	15085	1294	45	2	209	2	SPANXN5	23	52826372	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1181713	52826372	102444188	4320	23170										
XAGE5	0	genome.wustl.edu	37	chrX	52844169	52844169	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagtcaaagactggggatGaatgcggagatagtcctgat	13	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	52844169	52844169	G	A	SNP	XAGE5	ENST00000351072	human	ensembl	69_37n	1	known	missense	c.232	p.E78K	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	XAGE5	HGNC	ENSG00000171405	143	0	0	99	24	19.51	-	-	-	A	52844169	G	A	52844169	3	1	240	1	0	0	0	0	1	0	0	0	17518	1291	45	2	242	2	XAGE5	23	52844169	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	17797	52844169	102426391	4321	23171										
TSPYL2	0	genome.wustl.edu	37	chrX	53112400	53112400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcaaagccttcctgcgtctCaagcgcaagttcatccagat	9	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53112400	53112400	C	G	SNP	TSPYL2	ENST00000578306	human	ensembl	69_37n	1	known	missense	c.226	p.Q76E	0.997	pfam_NAP_family	pfam_NAP_family	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSPYL2	HGNC	ENSG00000184205	50	0	0	50	11	18.03	-	-	-	G	53112400	C	G	53112400	3	3	240	1	0	0	0	0	1	0	0	0	16756	813	29	2	722	2	TSPYL2	23	53112400	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	268231	53112400	102158160	4322	23172										
TSPYL2	0	genome.wustl.edu	37	chrX	53116972	53116972	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgcaggcatccagcaagatGaggacatctatgaggaagga	13	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53116972	53116972	G	A	SNP	TSPYL2	ENST00000375442	human	ensembl	69_37n	1	known	missense	c.1933	p.E645K	0.086	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	143	1	0.69	136	30	18.07	-	-	-	A	53116972	G	A	53116972	3	1	240	1	0	0	0	0	1	0	0	0	16756	1291	45	2	1959	2	TSPYL2	23	53116972	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4572	53116972	102153588	4323	23173										
IQSEC2	0	genome.wustl.edu	37	chrX	53264093	53264093	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggagcttggactgcccatCaggcagcacccccaggccac	11	17	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53264093	53264093	C	G	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3775	p.D1259H	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	48	0	0	48	11	18.64	-	-	-	G	53264093	C	G	53264093	3	3	240	1	0	0	0	0	1	0	0	0	7872	826	29	2	695	2	IQSEC2	23	53264093	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	147121	53264093	102006467	4324	23174										
IQSEC2	0	genome.wustl.edu	37	chrX	53283759	53283759	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtgatgtcattagaaaactCtccagatgtggtgacggagc	12	7	2	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53283759	53283759	C	G	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.1354	p.E452Q	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	26	0	0	29	8	21.62	-	-	-	G	53283759	C	G	53283759	3	3	240	1	0	0	0	0	1	0	0	0	7872	922	32	2	3160	2	IQSEC2	23	53283759	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	19666	53283759	101986801	4325	23175										
HUWE1	0	genome.wustl.edu	37	chrX	53610641	53610641	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcaagatcatgcgggtactCttcagttctgcaaacatcat	7	10	6	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53610641	53610641	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.5397	p.K1799N	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	119	0	0	100	33	24.81	-	-	-	G	53610641	C	G	53610641	3	3	240	1	0	0	0	0	1	0	0	0	7515	912	32	2	7899	2	HUWE1	23	53610641	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	326882	53610641	101659919	4326	23176										
HUWE1	0	genome.wustl.edu	37	chrX	53642741	53642741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gttgcatctgttttaagggtGggctgatgtctcatgagctc	13	7	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	53642741	53642741	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	silent	c.2013	p.P671	0.726	pfam_E3_Ub_ligase_DUF913,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	153	1	0.65	186	37	16.52	-	-	-	A	53642741	G	A	53642741	2	1	240	1	0	0	0	0	0	0	0	1	7515	1335	47	4		4	HUWE1	23	53642741	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	32100	53642741	101627819	4327	23177										
PHF8	0	genome.wustl.edu	37	chrX	54043158	54043158	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacatcaatcacatcaatctCtttgtcagaacctggagtaa	5	11	5	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	54043158	54043158	C	G	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.574	p.E192Q	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	108	0	0	103	34	24.46	-	-	-	G	54043158	C	G	54043158	3	3	240	1	0	0	0	0	1	0	0	0	11914	922	32	2	2846	2	PHF8	23	54043158	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	400417	54043158	101227402	4328	23178										
FAM120C	0	genome.wustl.edu	37	chrX	54114265	54114265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctctggaacagcttgccatCaaagtaaatccatggacagc	9	11	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	54114265	54114265	C	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2560	p.D854H	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	67	0	0	97	24	19.83	-	-	-	G	54114265	C	G	54114265	3	3	240	1	0	0	0	0	1	0	0	0	5458	826	29	2	750	2	FAM120C	23	54114265	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	71107	54114265	101156295	4329	23179										
FAM120C	0	genome.wustl.edu	37	chrX	54117849	54117849	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gattcggccaccaggccactGaaccatgtacctagaaaata	8	12	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	54117849	54117849	G	A	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	nonsense	c.2323	p.Q775*	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	64	0	0	66	16	19.51	-	-	-	A	54117849	G	A	54117849	4	1	240	1	0	0	0	0	0	1	0	0	5458	1299	45	2	991	2	FAM120C	23	54117849	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3584	54117849	101152711	4330	23180										
FAM120C	0	genome.wustl.edu	37	chrX	54159179	54159179	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttccattttcctctgtgtctCtgccagactaaaaagaactc	5	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	54159179	54159179	C	A	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	nonsense	c.2008	p.E670*	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	75	0	0	61	20	24.69	-	-	-	A	54159179	C	A	54159179	4	1	240	1	0	0	0	0	0	1	0	0	5458	922	32	2	1314	2	FAM120C	23	54159179	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	41330	54159179	101111381	4331	23181										
MAGED2	0	genome.wustl.edu	37	chrX	54837515	54837515	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccaagctccagtcatcccaaGagcctgaagcaccaccacct	6	18	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	54837515	54837515	G	C	SNP	MAGED2	ENST00000218439	human	ensembl	69_37n	1	known	missense	c.799	p.E267Q	0.579	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	65	0	0	52	16	23.53	-	-	-	C	54837515	G	C	54837515	3	2	240	1	0	0	0	0	1	0	0	0	9255	943	33	2	809	2	MAGED2	23	54837515	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	678336	54837515	100433045	4332	23182										
APEX2	0	genome.wustl.edu	37	chrX	55028814	55028814	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagtttacccaagaggaactCcgggctctggatagtgaggg	15	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	55028814	55028814	C	G	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	1	known	silent	c.372	p.L124	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	64	0	0	74	17	18.48	-	-	-	G	55028814	C	G	55028814	2	3	240	1	0	0	0	0	0	0	0	1	771	842	30	2		2	APEX2	23	55028814	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	191299	55028814	100241746	4333	23183										
APEX2	0	genome.wustl.edu	37	chrX	55033189	55033189	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	catagacacctttcaggcctCtttcctgctgcctgaggtga	9	13	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	55033189	55033189	C	G	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	1	known	missense	c.878	p.S293C	0.366	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	40	0	0	39	29	42.65	-	-	-	G	55033189	C	G	55033189	3	3	240	1	0	0	0	0	1	0	0	0	771	913	32	2	900	2	APEX2	23	55033189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4375	55033189	100237371	4334	23184										
ALAS2	0	genome.wustl.edu	37	chrX	55046763	55046763	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcaggcttacctggcaggatCttggccaaggtgaagagagt	14	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	55046763	55046763	C	A	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.813	p.K271N	1.000	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	64	0	0	68	9	11.69	-	-	-	A	55046763	C	A	55046763	3	1	240	1	0	0	0	0	1	0	0	0	485	912	32	2	974	2	ALAS2	23	55046763	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13574	55046763	100223797	4335	23185										
ALAS2	0	genome.wustl.edu	37	chrX	55052255	55052255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctagcagcctcttcttacctCctccagcctttgttgcctta	5	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	55052255	55052255	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.179	p.G60E	0.993	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	91	0	0	73	12	14.12	-	-	-	T	55052255	C	T	55052255	3	4	240	1	0	0	0	0	1	0	0	0	485	855	30	2	1624	2	ALAS2	23	55052255	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5492	55052255	100218305	4336	23186										
USP51	0	genome.wustl.edu	37	chrX	55514073	55514073	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttctgcatggatccatatcaGatgcagtaacttatagggaa	9	7	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	55514073	55514073	G	C	SNP	USP51	ENST00000500968	human	ensembl	69_37n	-1	known	missense	c.1300	p.L434V	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP51	HGNC	ENSG00000247746	79	0	0	68	24	26.09	-	-	-	C	55514073	G	C	55514073	3	2	240	1	0	0	0	0	1	0	0	0	17180	933	33	2	839	2	USP51	23	55514073	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	461818	55514073	99756487	4337	23187										
ZXDB	0	genome.wustl.edu	37	chrX	57620690	57620690	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taacagtggacacagatgctCtgactccttcgagcaccctt	8	13	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	57620690	57620690	C	G	SNP	ZXDB	ENST00000374888	human	ensembl	69_37n	1	known	missense	c.2209	p.L737V	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	125	0	0	149	31	17.22	-	-	-	G	57620690	C	G	57620690	3	3	240	1	0	0	0	0	1	0	0	0	18342	912	32	2	2211	2	ZXDB	23	57620690	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2106617	57620690	97649870	4338	23188										
ARHGEF9	0	genome.wustl.edu	37	chrX	62944579	62944579	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagcactaacgatggaatCtccagtgatcagcttaggag	10	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	62944579	62944579	C	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.22	p.D8N	1.000	pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	51	0	0	42	13	23.64	-	-	-	T	62944579	C	T	62944579	3	4	240	1	0	0	0	0	1	0	0	0	914	913	32	2	1564	2	ARHGEF9	23	62944579	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5323889	62944579	92325981	4339	23189										
ZC3H12B	0	genome.wustl.edu	37	chrX	64708808	64708808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgaagagtggatgagctctGagagtgaccctgaacagata	13	7	1	7			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	64708808	64708808	G	C	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.127	p.E43Q	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	49	0	0	50	13	20.63	-	-	-	C	64708808	G	C	64708808	3	2	240	1	0	0	0	0	1	0	0	0	17658	1291	45	2	129	2	ZC3H12B	23	64708808	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1764229	64708808	90561752	4340	23190										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722249	64722249	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacttctccaaactgaacatCaacagcatgcataaccgaga	6	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	64722249	64722249	C	A	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	silent	c.1671	p.I557	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	37	0	0	26	9	25.71	-	-	-	A	64722249	C	A	64722249	2	1	240	1	0	0	0	0	0	0	0	1	17658	816	29	2		2	ZC3H12B	23	64722249	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	13441	64722249	90548311	4341	23191										
MSN	0	genome.wustl.edu	37	chrX	64958994	64958994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctgatgctatggccaaggacCgcagtgaggaggaacgtacc	14	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	64958994	64958994	C	T	SNP	MSN	ENST00000360270	human	ensembl	69_37n	1	known	missense	c.1507	p.R503C	1.000	pirsf_ERM,pfam_ERM_C,superfamily_Moesin	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	68	0	0	25	26	50.98	-	-	-	T	64958994	C	T	64958994	3	4	240	1	0	0	0	0	1	0	0	0	9957	652	23	1	1553	1	MSN	23	64958994	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	236745	64958994	90311566	4342	23192										
AWAT2	0	genome.wustl.edu	37	chrX	69262375	69262375	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gctgtgcctaggtccaagttGagtgtgggggctccatggcc	16	10	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	69262375	69262375	G	C	SNP	AWAT2	ENST00000440401	human	ensembl	69_37n	-1	known	silent	c.315	p.L105	0.000	NULL	pfam_DAGAT	-	no_start_codon	AWAT2	HGNC	ENSG00000147160	11	0	0	8	8	50	-	-	-	C	69262375	G	C	69262375	2	2	240	1	0	0	0	0	0	0	0	1	1239	1305	45	2		2	AWAT2	23	69262375	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4303381	69262375	86008185	4343	23193										
DGAT2L6	0	genome.wustl.edu	37	chrX	69424872	69424872	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtagacaagtatcacgcactCtacatcagtgccctgcgcaa	8	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	69424872	69424872	C	T	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	silent	c.930	p.L310	1.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	77	0	0	66	16	19.51	-	-	-	T	69424872	C	T	69424872	2	4	240	1	0	0	0	0	0	0	0	1	4495	900	32	2		2	DGAT2L6	23	69424872	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	162497	69424872	85845688	4344	23194										
KIF4A	0	genome.wustl.edu	37	chrX	69573523	69573523	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttctgacgcttttaccactCagcatgctctccgtcaagcg	7	15	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	69573523	69573523	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	nonsense	c.1540	p.Q514*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	61	0	0	44	13	22.81	-	-	-	T	69573523	C	T	69573523	4	4	240	1	0	0	0	0	0	1	0	0	8355	827	29	2	1594	2	KIF4A	23	69573523	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	148651	69573523	85697037	4345	23195										
CXorf65	0	genome.wustl.edu	37	chrX	70325953	70325953	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcatcaggaaaagcatcttCattttccccgtttgttcaca	5	11	5	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	70325953	70325953	C	T	SNP	CXorf65	ENST00000374251	human	ensembl	69_37n	-1	known	missense	c.147	p.M49I	0.985	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165	182	0	0	142	41	22.4	-	-	-	T	70325953	C	T	70325953	3	4	240	1	0	0	0	0	1	0	0	0	4148	826	29	2	420	2	CXorf65	23	70325953	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	752430	70325953	84944607	4346	23196										
GJB1	0	genome.wustl.edu	37	chrX	70443811	70443811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctgcagctcatcctagtttCcaccccagctctcctcgtgg	7	18	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	70443811	70443811	C	G	SNP	GJB1	ENST00000361726	human	ensembl	69_37n	1	known	missense	c.254	p.S85C	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin32	-	no_errors	GJB1	HGNC	ENSG00000169562	124	0	0	144	31	17.71	-	-	-	G	70443811	C	G	70443811	3	3	240	1	0	0	0	0	1	0	0	0	6459	855	30	2	256	2	GJB1	23	70443811	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	117858	70443811	84826749	4347	23197										
TAF1	0	genome.wustl.edu	37	chrX	70683846	70683846	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cagaggacgaggaggacagtGaggatttccactccattgct	13	9	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	70683846	70683846	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.5671	p.E1891K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	120	0	0	95	31	24.6	-	-	-	A	70683846	G	A	70683846	3	1	240	1	0	0	0	0	1	0	0	0	15605	1291	45	2	5782	2	TAF1	23	70683846	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	240035	70683846	84586714	4348	23198										
HDAC8	0	genome.wustl.edu	37	chrX	71684452	71684452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aactgccattgaaggatgtaCttaagacacttgccaattcc	7	10	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	71684452	71684452	C	T	SNP	HDAC8	ENST00000373573	human	ensembl	69_37n	-1	known	silent	c.867	p.K289	0.963	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099	77	0	0	70	29	29.29	-	-	-	T	71684452	C	T	71684452	2	4	240	1	0	0	0	0	0	0	0	1	7064	564	20	4		4	HDAC8	23	71684452	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1000606	71684452	83586108	4349	23199										
RLIM	0	genome.wustl.edu	37	chrX	73812248	73812248	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caccactggcagctgtgtctGaagaacctgctccttgagaa	10	12	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	73812248	73812248	G	C	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	nonsense	c.902	p.S301*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	92	0	0	39	36	48	-	-	-	C	73812248	G	C	73812248	4	2	240	1	0	0	0	0	0	1	0	0	13476	1294	45	2	976	2	RLIM	23	73812248	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2127796	73812248	81458312	4350	23200										
MAGEE2	0	genome.wustl.edu	37	chrX	75003459	75003459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tactccaagactttcattttGatggtttcatggtgagctcg	9	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	75003459	75003459	G	C	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.1428	p.I476M	0.998	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	80	0	0	76	18	19.15	-	-	-	C	75003459	G	C	75003459	3	2	240	1	0	0	0	0	1	0	0	0	9257	1280	45	2	147	2	MAGEE2	23	75003459	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1191211	75003459	80267101	4351	23201										
CXorf26	0	genome.wustl.edu	37	chrX	75394728	75394728	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttcactcctttgcagcctGacattgagatggcttgggcc	10	12	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	75394728	75394728	G	C	SNP	CXorf26	ENST00000373358	human	ensembl	69_37n	1	known	missense	c.100	p.D34H	0.996	NULL	pfam_Put_polysacc_synth	-	no_errors	CXorf26	HGNC	ENSG00000102390	153	0	0	76	17	18.28	-	-	-	C	75394728	G	C	75394728	3	2	240	1	0	0	0	0	1	0	0	0	4135	1290	45	2	110	2	CXorf26	23	75394728	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	391269	75394728	79875832	4352	23202										
ATRX	0	genome.wustl.edu	37	chrX	76931791	76931791	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgatttagataaggcttcatCtccttgagggaaaaaagtgt	10	5	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	76931791	76931791	C	G	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.3739	p.D1247H	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	130	0	0	86	36	29.51	-	-	-	G	76931791	C	G	76931791	3	3	240	1	0	0	0	0	1	0	0	0	1212	913	32	2	3843	2	ATRX	23	76931791	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1537063	76931791	78338769	4353	23203										
ATRX	0	genome.wustl.edu	37	chrX	76938482	76938482	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cttatggtttgtatgaatttCattaatatcagtatctgaag	7	4	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	76938482	76938482	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.2266	p.E756K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	146	0	0	88	30	25.42	-	-	-	T	76938482	C	T	76938482	3	4	240	1	0	0	0	0	1	0	0	0	1212	835	29	2	5320	2	ATRX	23	76938482	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	6691	76938482	78332078	4354	23204										
ATRX	0	genome.wustl.edu	37	chrX	76938534	76938534	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcatcctgctcacctctttGaggattgctagcatttcatc	6	13	4	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	76938534	76938534	G	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	silent	c.2214	p.L738	0.558	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	132	0	0	84	24	22.22	-	-	-	C	76938534	G	C	76938534	2	2	240	1	0	0	0	0	0	0	0	1	1212	1277	45	2		2	ATRX	23	76938534	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	52	76938534	78332026	4355	23205										
PGK1	0	genome.wustl.edu	37	chrX	77378812	77378812	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgtcactgctgacaagtttGatgagaatgccaagactggc	11	8	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	77378812	77378812	G	C	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.877	p.D293H	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	64	0	0	58	18	23.68	-	-	-	C	77378812	G	C	77378812	3	2	240	1	0	0	0	0	1	0	0	0	11864	1290	45	2	907	2	PGK1	23	77378812	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	440278	77378812	77891748	4356	23206										
ITM2A	0	genome.wustl.edu	37	chrX	78622670	78622670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacgtcttgccgcgcctcctCcttttgcacggcggtagggg	13	15	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	78622670	78622670	C	T	SNP	ITM2A	ENST00000373298	human	ensembl	69_37n	-1	known	missense	c.43	p.E15K	1.000	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2A	HGNC	ENSG00000078596	40	0	0	27	13	32.5	-	-	-	T	78622670	C	T	78622670	3	4	240	1	0	0	0	0	1	0	0	0	7966	864	30	2	772	2	ITM2A	23	78622670	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1243858	78622670	76647890	4357	23207										
BRWD3	0	genome.wustl.edu	37	chrX	79985496	79985496	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaattcttgccgttccatctCgacttccactaacaaatctt	3	13	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	79985496	79985496	C	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.1151	p.R384P	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	197	0	0	115	40	25.81	-	-	-	G	79985496	C	G	79985496	3	3	240	1	0	0	0	0	1	0	0	0	1534	884	31	3	4373	3	BRWD3	23	79985496	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1362826	79985496	75285064	4358	23208										
HDX	0	genome.wustl.edu	37	chrX	83723725	83723725	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	caaggttgtactttggttctCagctcgaagggaactgccac	11	10	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	83723725	83723725	C	G	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.1006	p.E336Q	0.993	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	97	0	0	89	20	18.35	-	-	-	G	83723725	C	G	83723725	3	3	240	1	0	0	0	0	1	0	0	0	7077	835	29	2	1098	2	HDX	23	83723725	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3738229	83723725	71546835	4359	23209										
CHM	0	genome.wustl.edu	37	chrX	85213944	85213944	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tatcgactaacattagatttGattagaagatcaattagtaa	6	4	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	85213944	85213944	G	C	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.741	p.I247M	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	77	0	0	36	11	23.4	-	-	-	C	85213944	G	C	85213944	3	2	240	1	0	0	0	0	1	0	0	0	3379	1280	45	2	1260	2	CHM	23	85213944	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1490219	85213944	70056616	4360	23210										
DACH2	0	genome.wustl.edu	37	chrX	85404026	85404026	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtccggatcctccgcgggctGggggccatccagcccggggt	17	15	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	85404026	85404026	G	A	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	silent	c.402	p.L134	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	59	0	0	66	14	17.5	-	-	-	A	85404026	G	A	85404026	2	1	240	1	0	0	0	0	0	0	0	1	4253	1335	47	4		4	DACH2	23	85404026	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	190082	85404026	69866534	4361	23211										
DACH2	0	genome.wustl.edu	37	chrX	85950093	85950093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgcacctggaccccaacatgGaattgctcatgcagccctag	9	14	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	85950093	85950093	G	T	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	missense	c.842	p.G281V	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	68	0	0	40	19	32.2	-	-	-	T	85950093	G	T	85950093	3	4	240	1	0	0	0	0	1	0	0	0	4253	1174	41	2	860	2	DACH2	23	85950093	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	546067	85950093	69320467	4362	23212										
CPXCR1	0	genome.wustl.edu	37	chrX	88008976	88008976	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctttaccatccaaatagtttCacccatcacgagagagccat	5	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	88008976	88008976	C	T	SNP	CPXCR1	ENST00000276127	human	ensembl	69_37n	1	known	silent	c.561	p.F187	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183	32	0	0	27	9	25	-	-	-	T	88008976	C	T	88008976	2	4	240	1	0	0	0	0	0	0	0	1	3866	825	29	2		2	CPXCR1	23	88008976	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	2058883	88008976	67261584	4363	23213										
PCDH11X	0	genome.wustl.edu	37	chrX	91091032	91091032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taaacggagttcaaaactacGaactaattaaggtgcgtttt	8	6	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	91091032	91091032	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	41	0	0	24	12	33.33	-	-	-	A	91091032	G	A	91091032	3	1	240	1	0	0	0	0	1	0	0	0	11581	1059	37	1	531	1	PCDH11X	23	91091032	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3082056	91091032	64179528	4364	23214										
NAP1L3	0	genome.wustl.edu	37	chrX	92927781	92927781	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggtgttatcctgcacctcctCatcactgctgaactcctcat	6	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	92927781	92927781	C	A	SNP	NAP1L3	ENST00000373079	human	ensembl	69_37n	-1	known	nonsense	c.523	p.E175*	0.998	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310	69	0	0	38	15	28.3	-	-	-	A	92927781	C	A	92927781	4	1	240	1	0	0	0	0	0	1	0	0	10230	835	29	2	1001	2	NAP1L3	23	92927781	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1836749	92927781	62342779	4365	23215										
RPA4	0	genome.wustl.edu	37	chrX	96139471	96139471	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgtgtaatgtgaaccagctTctcagctctactgtgtttga	9	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	96139471	96139471	T	G	SNP	RPA4	ENST00000373040	human	ensembl	69_37n	1	known	silent	c.162	p.L54	0.082	superfamily_NA-bd_OB-fold-like,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	110	0	0	116	34	22.67	-	-	-	G	96139471	T	G	96139471	2	3	240	1	0	0	0	0	0	0	0	1	13625	1770	62	5		5	RPA4	23	96139471	Silent	SNP	T	TCGA-AC-A23H-01A-11D-A159-09	3211690	96139471	59131089	4366	23216										
ARL13A	0	genome.wustl.edu	37	chrX	100240741	100240741	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaactttccatctatgacctGaatggagacctgaagggccg	11	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	100240741	100240741	G	C	SNP	ARL13A	ENST00000450457	human	ensembl	69_37n	1	known	silent	c.216	p.L72	0.830	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL13A	HGNC	ENSG00000174225	122	0	0	83	32	27.83	-	-	-	C	100240741	G	C	100240741	2	2	240	1	0	0	0	0	0	0	0	1	930	1277	45	2		2	ARL13A	23	100240741	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	4101270	100240741	55029819	4367	23217										
TMEM35	0	genome.wustl.edu	37	chrX	100349772	100349772	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tccaccagctggtcggtgatCctctcaaacgctacgcccat	8	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	100349772	100349772	C	G	SNP	TMEM35	ENST00000372930	human	ensembl	69_37n	1	known	missense	c.331	p.P111A	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950	125	0	0	93	42	31.11	-	-	-	G	100349772	C	G	100349772	3	3	240	1	0	0	0	0	1	0	0	0	16252	855	30	2	337	2	TMEM35	23	100349772	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	109031	100349772	54920788	4368	23218										
HNRNPH2	0	genome.wustl.edu	37	chrX	100667407	100667407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccaaatgggatgacactgcCagtggactttcaggggcgaa	14	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	100667407	100667407	C	T	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	missense	c.431	p.P144L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	97	0	0	68	19	21.84	-	-	-	T	100667407	C	T	100667407	3	4	240	1	0	0	0	0	1	0	0	0	7318	594	21	4	433	4	HNRNPH2	23	100667407	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	317635	100667407	54603153	4369	23219										
ARMCX1	0	genome.wustl.edu	37	chrX	100808037	100808037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaaatctgggacgaagacGaggagtctacggacacctca	12	9	3	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	100808037	100808037	G	A	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.124	p.E42K	0.003	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	89	0	0	57	24	29.63	-	-	-	A	100808037	G	A	100808037	3	1	240	1	0	0	0	0	1	0	0	0	963	1059	37	1	126	1	ARMCX1	23	100808037	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	140630	100808037	54462523	4370	23220										
NXF5	0	genome.wustl.edu	37	chrX	101096072	101096072	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atatcaatgtcacggcccatCaagtcttgaagaagccaaga	8	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	101096072	101096072	C	G	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.396	p.L132F	0.995	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	108	0	0	105	32	23.36	-	-	-	G	101096072	C	G	101096072	3	3	240	1	0	0	0	0	1	0	0	0	10859	825	29	2	737	2	NXF5	23	101096072	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	288035	101096072	54174488	4371	23221										
GPRASP1	0	genome.wustl.edu	37	chrX	101909941	101909941	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agaaaatgctaataccttttCaaggcccatgatcaagaaag	7	8	2	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	101909941	101909941	C	G	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	nonsense	c.1100	p.S367*	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	33	0	0	32	10	23.81	-	-	-	G	101909941	C	G	101909941	4	3	240	1	0	0	0	0	0	1	0	0	6773	838	29	2	1102	2	GPRASP1	23	101909941	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	813869	101909941	53360619	4372	23222										
TCEAL3	0	genome.wustl.edu	37	chrX	102864443	102864443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagatgtgtcaagggctcaaGaggagctaaggaaaaaacag	14	5	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	102864443	102864443	G	C	SNP	TCEAL3	ENST00000243286	human	ensembl	69_37n	1	known	missense	c.451	p.E151Q	1.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507	339	0	0	292	79	21.29	-	-	-	C	102864443	G	C	102864443	3	2	240	1	0	0	0	0	1	0	0	0	15767	943	33	2	453	2	TCEAL3	23	102864443	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	954502	102864443	52406117	4373	23223										
FAM199X	0	genome.wustl.edu	37	chrX	103411548	103411548	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcccactcctgggacctcctCgcggggtgggcacctgcccg	13	18	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	103411548	103411548	C	G	SNP	FAM199X	ENST00000493442	human	ensembl	69_37n	1	known	missense	c.82	p.R28G	1.000	NULL	NULL	-	no_errors	FAM199X	HGNC	ENSG00000123575	16	0	0	7	5	41.67	-	-	-	G	103411548	C	G	103411548	3	3	240	1	0	0	0	0	1	0	0	0	5572	884	31	3	84	3	FAM199X	23	103411548	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	547105	103411548	51859012	4374	23224										
CXorf57	0	genome.wustl.edu	37	chrX	105905389	105905389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttatcctgaaagtattccacGgaaatttatgtttgaacaca	6	7	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	105905389	105905389	G	A	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.2123	p.R708Q	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	98	0	0	60	16	21.05	-	-	-	A	105905389	G	A	105905389	3	1	240	1	0	0	0	0	1	0	0	0	4144	1116	39	1	2169	1	CXorf57	23	105905389	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	2493841	105905389	49365171	4375	23225										
MORC4	0	genome.wustl.edu	37	chrX	106186349	106186349	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcctgtaaggagcaggcatgGaataatctagagaaggtgtt	13	5	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	106186349	106186349	G	C	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	missense	c.1772	p.S591C	0.998	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	69	0	0	67	24	26.37	-	-	-	C	106186349	G	C	106186349	3	2	240	1	0	0	0	0	1	0	0	0	9776	1174	41	2	1053	2	MORC4	23	106186349	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	280960	106186349	49084211	4376	23226										
COL4A5	0	genome.wustl.edu	37	chrX	107920853	107920853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaaaggagatcaaggaccacCaggactccaggtaggaaatg	13	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	107920853	107920853	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.3932	p.P1311L	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	45	0	0	32	14	30.43	-	-	-	T	107920853	C	T	107920853	3	4	240	1	0	0	0	0	1	0	0	0	3724	594	21	4	4091	4	COL4A5	23	107920853	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1734504	107920853	47349707	4377	23227										
GUCY2F	0	genome.wustl.edu	37	chrX	108625350	108625350	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acaaaaagacattataccttGagctctgttcttcctcgaag	6	10	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	108625350	108625350	G	C	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	silent	c.3147	p.L1049	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	82	0	0	60	18	23.08	-	-	-	C	108625350	G	C	108625350	2	2	240	1	0	0	0	0	0	0	0	1	6949	1277	45	2		2	GUCY2F	23	108625350	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	704497	108625350	46645210	4378	23228										
ACSL4	0	genome.wustl.edu	37	chrX	108926403	108926403	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atttggctgcatttcattttCttcacttaggatttccctgg	7	9	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	108926403	108926403	C	G	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	missense	c.313	p.E105Q	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	142	1	0.7	116	32	21.48	-	-	-	G	108926403	C	G	108926403	3	3	240	1	0	0	0	0	1	0	0	0	179	922	32	2	1878	2	ACSL4	23	108926403	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	301053	108926403	46344157	4379	23229										
RGAG1	0	genome.wustl.edu	37	chrX	109694739	109694739	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gggggaatacctaccccgctCatgtcagatctagactctgg	11	12	4	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	109694739	109694739	C	G	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	silent	c.894	p.L298	0.103	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	95	0	0	80	24	23.08	-	-	-	G	109694739	C	G	109694739	2	3	240	1	0	0	0	0	0	0	0	1	13357	813	29	2		2	RGAG1	23	109694739	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	768336	109694739	45575821	4380	23230										
PAK3	0	genome.wustl.edu	37	chrX	110406824	110406824	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tgtggttgaatccattgcttCaccagcagtaccaaataaag	8	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	110406824	110406824	C	T	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	missense	c.743	p.S248L	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	175	0	0	102	42	29.17	-	-	-	T	110406824	C	T	110406824	3	4	240	1	0	0	0	0	1	0	0	0	11475	838	29	2	773	2	PAK3	23	110406824	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	712085	110406824	44863736	4381	23231										
TRPC5	0	genome.wustl.edu	37	chrX	111022282	111022282	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atagcagccacatatcttttGactaaattcctgataacttc	4	10	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	111022282	111022282	G	C	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.2163	p.V721	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	249	2	0.8	161	58	26.48	-	-	-	C	111022282	G	C	111022282	2	2	240	1	0	0	0	0	0	0	0	1	16678	1277	45	2		2	TRPC5	23	111022282	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	615458	111022282	44248278	4382	23232										
TRPC5	0	genome.wustl.edu	37	chrX	111195346	111195346	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttccttgcgtatggcataGagcaatgcatcacccacata	7	12	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	111195346	111195346	G	C	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.303	p.L101	0.993	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	52	0	0	48	7	12.73	-	-	-	C	111195346	G	C	111195346	2	2	240	1	0	0	0	0	0	0	0	1	16678	929	33	2		2	TRPC5	23	111195346	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	173064	111195346	44075214	4383	23233										
LUZP4	0	genome.wustl.edu	37	chrX	114537906	114537906	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actctgaggaaggaaatcatGataaaaaaccatcccaaaaa	6	8	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	114537906	114537906	G	A	SNP	LUZP4	ENST00000371920	human	ensembl	69_37n	1	known	missense	c.265	p.D89N	0.014	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021	120	0	0	32	34	51.52	-	-	-	A	114537906	G	A	114537906	3	1	240	1	0	0	0	0	1	0	0	0	9154	1290	45	2	275	2	LUZP4	23	114537906	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3342560	114537906	40732654	4384	23234										
KIAA1210	0	genome.wustl.edu	37	chrX	118222089	118222089	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cctcaacagctgtgctttctGagatttgccggatttgagga	11	9	2	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	118222089	118222089	G	C	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	nonsense	c.3104	p.S1035*	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	35	0	0	28	17	37.78	-	-	-	C	118222089	G	C	118222089	4	2	240	1	0	0	0	0	0	1	0	0	8266	1294	45	2	2041	2	KIAA1210	23	118222089	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3684183	118222089	37048471	4385	23235										
KIAA1210	0	genome.wustl.edu	37	chrX	118243104	118243104	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acttgctgatctttcaggctCaggacccaacatgaagatgc	9	11	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	118243104	118243104	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.712	p.E238K	0.014	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	97	0	0	60	17	21.79	-	-	-	T	118243104	C	T	118243104	3	4	240	1	0	0	0	0	1	0	0	0	8266	835	29	2	4457	2	KIAA1210	23	118243104	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	21015	118243104	37027456	4386	23236										
SEPT6	0	genome.wustl.edu	37	chrX	118771006	118771006	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtacctgaagggtttgctgtCagggtcggtgtccttgaagc	15	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	118771006	118771006	C	G	SNP	SEPT6	ENST00000394617	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344H	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT6	HGNC	ENSG00000125354	58	0	0	32	14	30.43	-	-	-	G	118771006	C	G	118771006	3	3	240	1	0	0	0	0	1	0	0	0	14156	826	29	2	402	2	SEPT6	23	118771006	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	527902	118771006	36499554	4387	23237										
RNF113A	0	genome.wustl.edu	37	chrX	119005243	119005243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agctgtcgctcccatatcctCtggtcccacgggtttcgccg	10	16	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	119005243	119005243	C	G	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.334	p.E112Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	88	0	0	81	26	24.3	-	-	-	G	119005243	C	G	119005243	3	3	240	1	0	0	0	0	1	0	0	0	13513	922	32	2	701	2	RNF113A	23	119005243	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	234237	119005243	36265317	4388	23238										
CUL4B	0	genome.wustl.edu	37	chrX	119691862	119691862	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tttcagtttttgccaggtttCatctgtgtagttttctggta	9	6	4	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	119691862	119691862	C	T	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.643	p.E215K	1.000	superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	325	0	0	222	62	21.83	-	-	-	T	119691862	C	T	119691862	3	4	240	1	0	0	0	0	1	0	0	0	4089	835	29	2	2174	2	CUL4B	23	119691862	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	686619	119691862	35578698	4389	23239										
CT47B1	0	genome.wustl.edu	37	chrX	120008888	120008888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgcgggctccctggccatctCggccaggtcagctggcactg	14	16	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	120008888	120008888	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	69_37n	-1	known	missense	c.637	p.E213K	0.001	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446	115	0	0	74	23	23.71	-	-	-	T	120008888	C	T	120008888	3	4	240	1	0	0	0	0	1	0	0	0	4021	893	31	1	270	1	CT47B1	23	120008888	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	317026	120008888	35261672	4390	23240										
STAG2	0	genome.wustl.edu	37	chrX	123179050	123179050	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cacttaccatggctggtcctCagtggaagaagttcaaatcc	9	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	123179050	123179050	C	T	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	nonsense	c.499	p.Q167*	1.000	pfam_STAG	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	128	0	0	64	19	22.89	-	-	-	T	123179050	C	T	123179050	4	4	240	1	0	0	0	0	0	1	0	0	15334	827	29	2	521	2	STAG2	23	123179050	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3170162	123179050	32091510	4391	23241										
OCRL	0	genome.wustl.edu	37	chrX	128695189	128695189	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gacttgagcacagaagccttCttctactttgaatctgtgaa	8	9	3	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	128695189	128695189	C	G	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.858	p.F286L	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	152	0	0	93	31	25	-	-	-	G	128695189	C	G	128695189	3	3	240	1	0	0	0	0	1	0	0	0	10896	912	32	2	896	2	OCRL	23	128695189	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	5516139	128695189	26575371	4392	23242										
ZDHHC9	0	genome.wustl.edu	37	chrX	128963021	128963021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggaatcactccagggtcactGaagctggtcctcaacagtgt	11	11	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	128963021	128963021	G	A	SNP	ZDHHC9	ENST00000433917	human	ensembl	69_37n	-1	known	missense	c.143	p.S48L	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZDHHC9	HGNC	ENSG00000188706	68	0	0	55	18	24.66	-	-	-	A	128963021	G	A	128963021	3	1	240	1	0	0	0	0	1	0	0	0	17718	1281	45	2	862	2	ZDHHC9	23	128963021	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	267832	128963021	26307539	4393	23243										
UTP14A	0	genome.wustl.edu	37	chrX	129060220	129060220	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgttttgctttccaggtttCtcattaaagcccctgagggt	9	9	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	129060220	129060220	C	G	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	missense	c.1948	p.L650V	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	41	0	0	31	8	20.51	-	-	-	G	129060220	C	G	129060220	3	3	240	1	0	0	0	0	1	0	0	0	17192	913	32	2	2002	2	UTP14A	23	129060220	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	97199	129060220	26210340	4394	23244										
ELF4	0	genome.wustl.edu	37	chrX	129200908	129200908	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agacaaagtctggttgcccaGaaggctcggattgtgggaac	14	8	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	129200908	129200908	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	silent	c.1780	p.L594	0.900	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	23	0	0	31	9	22.5	-	-	-	A	129200908	G	A	129200908	2	1	240	1	0	0	0	0	0	0	0	1	5093	933	33	2		2	ELF4	23	129200908	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	140688	129200908	26069652	4395	23245										
ELF4	0	genome.wustl.edu	37	chrX	129201241	129201241	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aagttgggggaggccactgaGaatcagtggagcccctgggg	18	8	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	129201241	129201241	G	C	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1447	p.L483V	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	33	0	0	20	10	33.33	-	-	-	C	129201241	G	C	129201241	3	2	240	1	0	0	0	0	1	0	0	0	5093	942	33	2	548	2	ELF4	23	129201241	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	333	129201241	26069319	4396	23246										
TFDP3	0	genome.wustl.edu	37	chrX	132351894	132351894	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gaccagctcgcccaccacttCctggcaggaagtggtccctt	10	16	0	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	132351894	132351894	C	A	SNP	TFDP3	ENST00000310125	human	ensembl	69_37n	-1	known	nonsense	c.394	p.E132*	1.000	pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP3	HGNC	ENSG00000183434	101	0	0	85	26	23.42	-	-	-	A	132351894	C	A	132351894	4	1	240	1	0	0	0	0	0	1	0	0	15894	864	30	2	827	2	TFDP3	23	132351894	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3150653	132351894	22918666	4397	23247										
FAM127B	0	genome.wustl.edu	37	chrX	134186115	134186115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggcccggccaggagggccttCatcagctgcacccgaccgtc	13	17	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	134186115	134186115	C	T	SNP	FAM127B	ENST00000370775	human	ensembl	69_37n	-1	known	missense	c.24	p.M8I	0.248	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950	34	0	0	11	4	26.67	-	-	-	T	134186115	C	T	134186115	3	4	240	1	0	0	0	0	1	0	0	0	5472	826	29	2	385	2	FAM127B	23	134186115	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1834221	134186115	21084445	4398	23248										
GPR112	0	genome.wustl.edu	37	chrX	135429316	135429316	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctgctcaaaacctccccctGacaacattcctcctgcgtcc	4	19	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	135429316	135429316	G	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3451	p.D1151N	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	61	0	0	72	20	21.74	-	-	-	A	135429316	G	A	135429316	3	1	240	1	0	0	0	0	1	0	0	0	6679	1290	45	2	3461	2	GPR112	23	135429316	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1243201	135429316	19841244	4399	23249										
LDOC1	0	genome.wustl.edu	37	chrX	140271168	140271168	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctcagggcgcggtgccgcatCaggagcgcgtgcagcagcag	17	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	140271168	140271168	C	G	SNP	LDOC1	ENST00000370526	human	ensembl	69_37n	-1	known	silent	c.39	p.L13	0.996	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195	12	0	0	9	4	30.77	-	-	-	G	140271168	C	G	140271168	2	3	240	1	0	0	0	0	0	0	0	1	8763	813	29	2		2	LDOC1	23	140271168	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	4841852	140271168	14999392	4400	23250										
MAGEC1	0	genome.wustl.edu	37	chrX	140994641	140994641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tctccagattcctgtgagctCctcctcctcctcctccactt	4	19	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	140994641	140994641	C	T	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.1451	p.S484F	0.231	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	182	0	0	112	33	22.76	-	-	-	T	140994641	C	T	140994641	3	4	240	1	0	0	0	0	1	0	0	0	9251	855	30	2	1457	2	MAGEC1	23	140994641	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	723473	140994641	14275919	4401	23251										
MAGEC1	0	genome.wustl.edu	37	chrX	140994850	140994850	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	actttcctcagagccctcctCagggggaggactccctatct	9	15	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	140994850	140994850	C	T	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	nonsense	c.1660	p.Q554*	0.457	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	83	0	0	62	13	17.33	-	-	-	T	140994850	C	T	140994850	4	4	240	1	0	0	0	0	0	1	0	0	9251	827	29	2	1666	2	MAGEC1	23	140994850	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	209	140994850	14275710	4402	23252										
MAGEC2	0	genome.wustl.edu	37	chrX	141290720	141290720	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccatgacagtggcatcatCtgcggtatcaattgtggcct	12	10	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	141290720	141290720	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.1054	p.D352N	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	72	0	0	58	13	18.31	-	-	-	T	141290720	C	T	141290720	3	4	240	1	0	0	0	0	1	0	0	0	9252	913	32	2	71	2	MAGEC2	23	141290720	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	295870	141290720	13979840	4403	23253										
MAGEC2	0	genome.wustl.edu	37	chrX	141291015	141291015	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gcatatacccctactgcattCagcacttcccagatgacctc	5	16	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	141291015	141291015	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.092	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	79	0	0	71	20	21.98	-	-	-	T	141291015	C	T	141291015	2	4	240	1	0	0	0	0	0	0	0	1	9252	813	29	2		2	MAGEC2	23	141291015	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	295	141291015	13979545	4404	23254										
UBE2NL	0	genome.wustl.edu	37	chrX	142967229	142967229	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gagctgccccacaggatcatCaaggaaacccagcgtttgct	10	13	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	142967229	142967229	C	G	SNP	UBE2NL	ENST00000370494	human	ensembl	69_37n	1	known	missense	c.27	p.I9M	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2NL	HGNC	ENSG00000102069	41	0	0	22	11	33.33	-	-	-	G	142967229	C	G	142967229	3	3	240	1	0	0	0	0	1	0	0	0	16964	816	29	2	29	2	UBE2NL	23	142967229	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	1676214	142967229	12303331	4405	23255										
SLITRK2	0	genome.wustl.edu	37	chrX	144906173	144906173	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taagtgccactgagctgctaGaaaagcaggccacaccaaga	10	11	0	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	144906173	144906173	G	C	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.2230	p.E744Q	0.999	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	52	0	0	40	8	16.67	-	-	-	C	144906173	G	C	144906173	3	2	240	1	0	0	0	0	1	0	0	0	14832	943	33	2	2232	2	SLITRK2	23	144906173	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1938944	144906173	10364387	4406	23256										
AFF2	0	genome.wustl.edu	37	chrX	148037455	148037455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agtgtctcaaaggacaattgGgaaaaaacagcccaaaaaag	9	7	1	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	148037455	148037455	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.1880	p.G627V	0.989	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	50	0	0	61	17	21.79	-	-	-	T	148037455	G	T	148037455	3	4	240	1	0	0	0	0	1	0	0	0	357	1232	43	4	1977	4	AFF2	23	148037455	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	3131282	148037455	7233105	4407	23257										
MTM1	0	genome.wustl.edu	37	chrX	149828937	149828937	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtactttcttattcaactgtGaatctgctcgagaaagacag	8	8	3	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	149828937	149828937	G	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	nonsense	c.1447	p.E483*	1.000	NULL	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	194	0	0	158	49	23.67	-	-	-	T	149828937	G	T	149828937	4	4	240	1	0	0	0	0	0	1	0	0	10009	1291	45	2	1493	2	MTM1	23	149828937	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1791482	149828937	5441623	4408	23258										
MAGEA4	0	genome.wustl.edu	37	chrX	151092146	151092146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccagagtcatcatgtcttctGagcagaagagtcagcactgc	10	11	5	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	151092146	151092146	G	A	SNP	MAGEA4	ENST00000276344	human	ensembl	69_37n	1	known	missense	c.10	p.E4K	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	42	0	0	24	10	29.41	-	-	-	A	151092146	G	A	151092146	3	1	240	1	0	0	0	0	1	0	0	0	9237	1291	45	2	12	2	MAGEA4	23	151092146	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	1263209	151092146	4178414	4409	23259										
MAGEA12	0	genome.wustl.edu	37	chrX	151900219	151900219	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aggcctgtcttgggcacgatCtgattgtcgcccagcaggcc	13	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	151900219	151900219	C	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.582	p.Q194H	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	156	0	0	130	41	23.98	-	-	-	G	151900219	C	G	151900219	3	3	240	1	0	0	0	0	1	0	0	0	9233	912	32	2	366	2	MAGEA12	23	151900219	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	808073	151900219	3370341	4410	23260										
ZNF275	0	genome.wustl.edu	37	chrX	152612650	152612650	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccctggagaatgccgcggaGaagagggagcagatggagag	19	7	0	5			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	152612650	152612650	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	1	known	silent	c.597	p.E199	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	53	0	0	40	15	27.27	-	-	-	A	152612650	G	A	152612650	2	1	240	1	0	0	0	0	0	0	0	1	17906	933	33	2		2	ZNF275	23	152612650	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	712431	152612650	2657910	4411	23261										
TREX2	0	genome.wustl.edu	37	chrX	152713279	152713279	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cggccaactcgatcttgggaGagggcttcctgcccgcccca	12	16	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	152713279	152713279	G	A	SNP	TREX2	ENST00000334497	human	ensembl	69_37n	-1	known	missense	c.22	p.L8F	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	TREX2	HGNC	ENSG00000183479	66	0	0	46	16	25.81	-	-	-	A	152713279	G	A	152713279	3	1	240	1	0	0	0	0	1	0	0	0	16573	957	33	2		2	TREX2	23	152713279	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	100629	152713279	2557281	4412	23262										
ATP2B3	0	genome.wustl.edu	37	chrX	152825294	152825294	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagagtcgctgctgctgcgGaagccgtacggccgcgacaa	14	13	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	152825294	152825294	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	silent	c.2733	p.R911	0.943	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	61	0	0	42	18	30	-	-	-	A	152825294	G	A	152825294	2	1	240	1	0	0	0	0	0	0	0	1	1145	1161	41	2		2	ATP2B3	23	152825294	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	112015	152825294	2445266	4413	23263										
DUSP9	0	genome.wustl.edu	37	chrX	152915644	152915644	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttgagcgcagcttgcggctgGaggagcgccactcgcaggag	17	11	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	152915644	152915644	G	T	SNP	DUSP9	ENST00000342782	human	ensembl	69_37n	1	known	nonsense	c.1039	p.E347*	0.916	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP9	HGNC	ENSG00000130829	62	0	0	51	15	22.73	-	-	-	T	152915644	G	T	152915644	4	4	240	1	0	0	0	0	0	1	0	0	4867	1175	41	2	1049	2	DUSP9	23	152915644	Nonsense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	90350	152915644	2354916	4414	23264										
SLC6A8	0	genome.wustl.edu	37	chrX	152960586	152960586	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	accacttggagtaccgagctCaggacgcagatgtcaggggc	14	11	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	152960586	152960586	C	T	SNP	SLC6A8	ENST00000253122	human	ensembl	69_37n	1	known	nonsense	c.1825	p.Q609*	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine	-	no_errors	SLC6A8	HGNC	ENSG00000130821	37	0	0	21	14	40	-	-	-	T	152960586	C	T	152960586	4	4	240	1	0	0	0	0	0	1	0	0	14779	827	29	2	1875	2	SLC6A8	23	152960586	Nonsense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	44942	152960586	2309974	4415	23265										
PLXNB3	0	genome.wustl.edu	37	chrX	153042978	153042978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	acagcccttatcccctgcctCgcagggcacgctgcagaagt	10	16	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153042978	153042978	C	T	SNP	PLXNB3	ENST00000448847	human	ensembl	69_37n	1	known	missense	c.7	p.R3C	0.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLXNB3	HGNC	ENSG00000198753	34	0	0	40	9	18.37	-	-	-	T	153042978	C	T	153042978	3	4	240	1	0	0	0	0	1	0	0	0	12199	899	31	1		1	PLXNB3	23	153042978	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	82392	153042978	2227582	4416	23266										
PDZD4	0	genome.wustl.edu	37	chrX	153070071	153070071	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	cgctcatactcctcatccgtGaggcccgggacgtcgccccc	10	19	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153070071	153070071	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	silent	c.1047	p.L349	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	14	0	0	11	9	45	-	-	-	A	153070071	G	A	153070071	2	1	240	1	0	0	0	0	0	0	0	1	11776	1277	45	2		2	PDZD4	23	153070071	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	27093	153070071	2200489	4417	23267										
ARHGAP4	0	genome.wustl.edu	37	chrX	153175227	153175227	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtgatatacttgtgggggatGaggccccgcatgccgttgtg	16	8	0	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153175227	153175227	G	A	SNP	ARHGAP4	ENST00000442172	human	ensembl	69_37n	-1	novel	missense	c.848	p.S283L	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP4	HGNC	ENSG00000089820	17	0	0	1	4	80	-	-	-	A	153175227	G	A	153175227	3	1	240	1	0	0	0	0	1	0	0	0	887	1277	45	2	474	2	ARHGAP4	23	153175227	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	105156	153175227	2095333	4418	23268										
RENBP	0	genome.wustl.edu	37	chrX	153208406	153208406	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ccgagctgctccaccaggttCagtagcatcatgggcaccgc	11	15	2	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153208406	153208406	C	T	SNP	RENBP	ENST00000393700	human	ensembl	69_37n	-1	known	silent	c.588	p.L196	0.232	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	-	no_errors	RENBP	HGNC	ENSG00000102032	30	0	0	26	4	13.33	-	-	-	T	153208406	C	T	153208406	2	4	240	1	0	0	0	0	0	0	0	1	13308	813	29	2		2	RENBP	23	153208406	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	33179	153208406	2062154	4419	23269										
TMEM187	0	genome.wustl.edu	37	chrX	153247681	153247681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gccttcctggccatgccgttCaactcactcgtgaacatggc	9	15	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153247681	153247681	C	G	SNP	TMEM187	ENST00000369982	human	ensembl	69_37n	1	known	missense	c.168	p.F56L	0.989	NULL	NULL	-	no_errors	TMEM187	HGNC	ENSG00000177854	18	0	0	19	9	32.14	-	-	-	G	153247681	C	G	153247681	3	3	240	1	0	0	0	0	1	0	0	0	16204	825	29	2	170	2	TMEM187	23	153247681	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	39275	153247681	2022879	4420	23270										
TKTL1	0	genome.wustl.edu	37	chrX	153540979	153540979	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	aaagccaatgccgagagaaaGagcagatgccattatcaaat	9	8	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153540979	153540979	G	A	SNP	TKTL1	ENST00000369915	human	ensembl	69_37n	1	known	missense	c.719	p.R240K	1.000	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	151	1	0.66	108	29	21.17	-	-	-	A	153540979	G	A	153540979	3	1	240	1	0	0	0	0	1	0	0	0	16030	942	33	2	741	2	TKTL1	23	153540979	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	293298	153540979	1729581	4421	23271										
TKTL1	0	genome.wustl.edu	37	chrX	153555942	153555942	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctggcactataccaggtcctCcgccactgtgtcagtgacaa	9	14	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153555942	153555942	C	T	SNP	TKTL1	ENST00000369915	human	ensembl	69_37n	1	known	silent	c.1407	p.L469	0.564	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	87	0	0	64	25	28.09	-	-	-	T	153555942	C	T	153555942	2	4	240	1	0	0	0	0	0	0	0	1	16030	842	30	2		2	TKTL1	23	153555942	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	14963	153555942	1714618	4422	23272										
FLNA	0	genome.wustl.edu	37	chrX	153582801	153582801	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgacaaggtcaaagggcctCaggctggtcacatccagccc	11	13	3	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153582801	153582801	C	G	SNP	FLNA	ENST00000438732	human	ensembl	69_37n	-1	novel	nonstop	c.212	p.*71S	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	-	no_start_codon:pseudogene:no_stop_codon	FLNA	HGNC	ENSG00000196924	29	0	0	38	12	24	-	-	-	G	153582801	C	G	153582801	4	3	240	1	0	0	0	0	0	0	0	0	5979	813	29	2	2643	2	FLNA	23	153582801	Nonstop_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	26859	153582801	1687759	4423	23273										
FLNA	0	genome.wustl.edu	37	chrX	153585974	153585974	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttggatgtgtgtcttcttCggcttgccttcgggatcctg	12	10	3	0			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153585974	153585974	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.4773	p.P1591	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	99	0	0	84	27	24.11	-	-	-	T	153585974	C	T	153585974	2	4	240	1	0	0	0	0	0	0	0	1	5979	871	31	1		1	FLNA	23	153585974	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	3173	153585974	1684586	4424	23274										
FLNA	0	genome.wustl.edu	37	chrX	153586611	153586611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ctccccggcgtcctttgcatCgatggtgaactccacgggca	11	15	0	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153586611	153586611	C	G	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.4711	p.D1571H	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	27	0	0	21	6	22.22	-	-	-	G	153586611	C	G	153586611	3	3	240	1	0	0	0	0	1	0	0	0	5979	884	31	3	3316	3	FLNA	23	153586611	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	637	153586611	1683949	4425	23275										
FLNA	0	genome.wustl.edu	37	chrX	153596430	153596430	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	atgaggcccaggatcagcttCaggttcccgtccacgatggc	12	13	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153596430	153596430	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.402	p.L134	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	66	0	0	58	13	18.31	-	-	-	T	153596430	C	T	153596430	2	4	240	1	0	0	0	0	0	0	0	1	5979	813	29	2		2	FLNA	23	153596430	Silent	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	9819	153596430	1674130	4426	23276										
GAB3	0	genome.wustl.edu	37	chrX	153927707	153927707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	gtggggtccaagaccagaggCaccagcctgggggctcatgg	17	11	1	2			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	153927707	153927707	C	T	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.1207	p.A403T	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	79	0	0	63	23	26.44	-	-	-	T	153927707	C	T	153927707	3	4	240	1	0	0	0	0	1	0	0	0	6199	710	25	4	576	4	GAB3	23	153927707	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	331277	153927707	1342853	4427	23277										
H2AFB1	0	genome.wustl.edu	37	chrX	154113468	154113468	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ggccactacgctcagcgcctGagtcgcacggcgccggtcta	13	16	2	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	154113468	154113468	G	A	SNP	H2AFB1	ENST00000354461	human	ensembl	69_37n	1	known	silent	c.144	p.L48	0.970	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFB1	HGNC	ENSG00000198082	72	0	0	68	9	11.69	-	-	-	A	154113468	G	A	154113468	2	1	240	1	0	0	0	0	0	0	0	1	6975	1277	45	2		2	H2AFB1	23	154113468	Silent	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	185761	154113468	1157092	4428	23278										
F8	0	genome.wustl.edu	37	chrX	154157864	154157864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	taatggagatctatttgcttGagggatgctatgactcctcg	11	7	1	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	154157864	154157864	G	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.4201	p.Q1401E	0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	111	0	0	81	23	22.12	-	-	-	C	154157864	G	C	154157864	3	2	240	1	0	0	0	0	1	0	0	0	5387	1299	45	2	2934	2	F8	23	154157864	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	44396	154157864	1112696	4429	23279										
MTCP1	0	genome.wustl.edu	37	chrX	154294234	154294234	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	ttcgtcgcggtagataccctCttggtgaacccagaggtgat	12	10	1	4			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	154294234	154294234	C	T	SNP	MTCP1	ENST00000362018	human	ensembl	69_37n	-1	known	missense	c.52	p.E18K	1.000	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	-	no_errors	MTCP1	HGNC	ENSG00000214827	31	0	0	27	10	27.03	-	-	-	T	154294234	C	T	154294234	3	4	240	1	0	0	0	0	1	0	0	0	9987	922	32	2	283	2	MTCP1	23	154294234	Missense_Mutation	SNP	C	TCGA-AC-A23H-01A-11D-A159-09	136370	154294234	976326	4430	23280										
SPRY3	0	genome.wustl.edu	37	chrX	155004068	155004068	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	agcgctgcctttgctctgctGagagcctcctcgattatggc	11	13	1	1			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	155004068	155004068	G	A	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	missense	c.535	p.E179K	0.996	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	102	0	0	103	25	19.53	-	-	-	A	155004068	G	A	155004068	3	1	240	1	0	0	0	0	1	0	0	0	15198	1291	45	2	537	2	SPRY3	23	155004068	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	709834	155004068	266492	4431	23281										
IL9R	0	genome.wustl.edu	37	chrX	155237196	155237196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.672472291336802	2973	0	4.45790796144407	4.80294183787688	4.13961040304774	0.0124510107149866	0.160224848411275	2306	tcttggcctcagggtgaagaGaatcttctaccagaacgtgc	11	10	4	3			TCGA-AC-A23H-01A-11D-A159-09	TCGA-AC-A23H-11A-12D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cee435b5-c424-4f9d-a834-ec90c1807913	15408151-7d19-4d24-a9a1-bc9f913d5e36	X	155237196	155237196	G	C	SNP	IL9R	ENST00000244174	human	ensembl	69_37n	1	known	missense	c.896	p.R299T	0.522	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334	68	0	0	72	17	19.1	-	-	-	C	155237196	G	C	155237196	3	2	240	1	0	0	0	0	1	0	0	0	7762	942	33	2	926	2	IL9R	23	155237196	Missense_Mutation	SNP	G	TCGA-AC-A23H-01A-11D-A159-09	233128	155237196	33364	4432	23282										
UBR4	0	genome.wustl.edu	37	chr1	19408173	19408173	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gttgtcttgtgacatttgctGaacgcttggatgactcaaca	10	8	2	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	19408173	19408173	G	A	SNP	UBR4	ENST00000375225	human	ensembl	69_37n	-1	known	missense	c.128	p.S43L	0.003	NULL	NULL	-	no_errors	UBR4	HGNC	ENSG00000127481	22	0	0	15	8	34.78	-	-	-	A	19408173	G	A	19408173	3	1	241	1	0	0	0	0	1	0	0	0	17001	1305	45	2		2	UBR4	1	19408173	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		19408173	229842448	1	23283										
ZBTB40	0	genome.wustl.edu	37	chr1	22835712	22835712	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cggaggaggagcacctggcaGagactgtgaaagaggtgtgg	19	6	0	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	22835712	22835712	G	A	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	missense	c.1819	p.E607K	0.563	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	40	0	0	27	8	22.86	-	-	-	A	22835712	G	A	22835712	3	1	241	1	0	0	0	0	1	0	0	0	17638	943	33	2	1849	2	ZBTB40	1	22835712	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	3427539	22835712	226414909	2	23284										
TCEA3	0	genome.wustl.edu	37	chr1	23743835	23743835	+	Missense_Mutation	SNP	G	G	T													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gccctttttccttcttctttGccttttctctttcctctcct							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	23743835	23743835	G	T	SNP	TCEA3	ENST00000450454	human	ensembl	69_37n	-1	known	missense	c.287	p.A96E	0.995	superfamily_TFIIS_N,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA3	HGNC	ENSG00000204219	147	0	0	92	25	21.37	-	-	-	T	23743835	G	T	23743835	3	4	241	1	0	0	0	0	1	0	0	0	15764	1319	46	4	791	4	TCEA3	1	23743835	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	908123	23743835	225506786	3	23285	216	2								
TCEA3	0	genome.wustl.edu	37	chr1	23743844	23743844	+	Missense_Mutation	SNP	C	C	G													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ccttcttctttgccttttctCtttcctctcctttttctcct							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	23743844	23743844	C	G	SNP	TCEA3	ENST00000450454	human	ensembl	69_37n	-1	known	missense	c.278	p.R93T	1.000	superfamily_TFIIS_N,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA3	HGNC	ENSG00000204219	129	0	0	85	21	19.81	-	-	-	G	23743844	C	G	23743844	3	3	241	1	0	0	0	0	1	0	0	0	15764	913	32	2	800	2	TCEA3	1	23743844	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	9	23743844	225506777	4	23286	216	2								
GNL2	0	genome.wustl.edu	37	chr1	38061433	38061433	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ggcttcaccatcttggcgacGagaccgggaccggagtgcga	15	12	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	38061433	38061433	G	A	SNP	GNL2	ENST00000488496	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GNL2	HGNC	ENSG00000134697	29	0	0	23	10	30.3	-	-	-	A	38061433	G	A	38061433	1	1	241	0	1	0	0	0	0	0	0	0	6588	1073	37	1		1	GNL2	1	38061433	RNA	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	14317589	38061433	211189188	5	23287										
LDLRAD1	0	genome.wustl.edu	37	chr1	54476002	54476002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cgcagttgttagtgccatcaCatttttggtctgagtagatc	10	8	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	54476002	54476002	C	A	SNP	LDLRAD1	ENST00000371360	human	ensembl	69_37n	-1	known	missense	c.422	p.C141F	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985	47	0	0	25	7	21.88	-	-	-	A	54476002	C	A	54476002	3	1	241	1	0	0	0	0	1	0	0	0	8759	478	17	4	203	4	LDLRAD1	1	54476002	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	16414569	54476002	194774619	6	23288										
GIPC2	0	genome.wustl.edu	37	chr1	78546505	78546505	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tctgaggattcacttggtctCaccattacagataatggtgt	9	8	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	78546505	78546505	C	T	SNP	GIPC2	ENST00000370759	human	ensembl	69_37n	1	known	silent	c.387	p.L129	0.995	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,superfamily_Ig_E-set,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC2	HGNC	ENSG00000137960	56	0	0	37	13	26	-	-	-	T	78546505	C	T	78546505	2	4	241	1	0	0	0	0	0	0	0	1	6445	813	29	2		2	GIPC2	1	78546505	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	24070503	78546505	170704116	7	23289										
ARHGAP29	0	genome.wustl.edu	37	chr1	94652094	94652094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tggctctctttcatctagatCatctgcagaggacatagttc	8	10	5	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	94652094	94652094	C	T	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.1741	p.D581N	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	73	0	0	48	12	20	-	-	-	T	94652094	C	T	94652094	3	4	241	1	0	0	0	0	1	0	0	0	880	826	29	2	2076	2	ARHGAP29	1	94652094	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	16105589	94652094	154598527	8	23290										
STXBP3	0	genome.wustl.edu	37	chr1	109338874	109338874	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aggacctggcacttggaactGatgcagaaggacagaaggtg	15	7	0	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	109338874	109338874	G	C	SNP	STXBP3	ENST00000370008	human	ensembl	69_37n	1	known	missense	c.1129	p.D377H	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266	34	0	0	27	10	27.03	-	-	-	C	109338874	G	C	109338874	3	2	241	1	0	0	0	0	1	0	0	0	15445	1290	45	2	1183	2	STXBP3	1	109338874	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	14686780	109338874	139911747	9	23291										
PDE4DIP	0	genome.wustl.edu	37	chr1	144918872	144918872	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgactcagactatggtttagGtgctggatgttttgttcctg	12	6	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	144918872	144918872	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	silent	c.1314	p.H438	0.121	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	213	0	0	163	20	10.93	-	-	-	A	144918872	G	A	144918872	2	1	241	1	0	0	0	0	0	0	0	1	11716	1252	44	4		4	PDE4DIP	1	144918872	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	35579998	144918872	104331749	10	23292										
TMOD4	0	genome.wustl.edu	37	chr1	151147306	151147306	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ggtccttaggatctcatcttCatctatgtctctgtatttct	6	10	6	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	151147306	151147306	C	A	SNP	TMOD4	ENST00000295314	human	ensembl	69_37n	-1	known	nonsense	c.46	p.E16*	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD4	HGNC	ENSG00000163157	47	0	0	25	26	50.98	-	-	-	A	151147306	C	A	151147306	4	1	241	1	0	0	0	0	0	1	0	0	16331	835	29	2	1027	2	TMOD4	1	151147306	Nonsense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	6228434	151147306	98103315	11	23293										
FLG2	0	genome.wustl.edu	37	chr1	152327368	152327368	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aggactgacctgagcctgatCcatgttggccaaagccagag	12	11	0	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	152327368	152327368	C	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.2894	p.G965A	0.005	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	119	0	0	75	56	42.75	-	-	-	G	152327368	C	G	152327368	3	3	241	1	0	0	0	0	1	0	0	0	5969	855	30	2	4285	2	FLG2	1	152327368	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	1180062	152327368	96923253	12	23294										
FLG2	0	genome.wustl.edu	37	chr1	152327430	152327430	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgttgtccaaatccaaaagtCtgtcctgaacttgacccatg	7	11	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	152327430	152327430	C	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.2832	p.Q944H	0.010	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	125	0	0	70	43	38.05	-	-	-	G	152327430	C	G	152327430	3	3	241	1	0	0	0	0	1	0	0	0	5969	912	32	2	4347	2	FLG2	1	152327430	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	62	152327430	96923191	13	23295										
OR10J1	0	genome.wustl.edu	37	chr1	159410259	159410259	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	attatctctacaatcctcaaGattgcttcagttgagggccg	8	10	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	159410259	159410259	G	C	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	missense	c.711	p.K237N	0.028	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	86	0	0	84	19	18.45	-	-	-	C	159410259	G	C	159410259	3	2	241	1	0	0	0	0	1	0	0	0	10983	933	33	2	713	2	OR10J1	1	159410259	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	7082829	159410259	89840362	14	23296										
CDK18	0	genome.wustl.edu	37	chr1	205500482	205500482	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cattctccaggacgagggaaGaacaggcggcagagcatctt	13	10	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	205500482	205500482	G	A	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.1491	p.K497	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	25	0	0	36	4	10	-	-	-	A	205500482	G	A	205500482	2	1	241	1	0	0	0	0	0	0	0	1	3163	933	33	2		2	CDK18	1	205500482	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	46090223	205500482	43750139	15	23297										
ACTA1	0	genome.wustl.edu	37	chr1	229568794	229568794	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctaggggcgtcatccccggcGaagccggctttcaccaggcc	13	16	2	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	1	229568794	229568794	G	A	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	silent	c.69	p.F23	0.952	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	15	0	0	16	24	60	-	-	-	A	229568794	G	A	229568794	2	1	241	1	0	0	0	0	0	0	0	1	191	1049	37	1		1	ACTA1	1	229568794	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	24068312	229568794	19681827	16	23298										
FABP1	0	genome.wustl.edu	37	chr2	88425757	88425757	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ccccaccgtgaattcgttttGgatcactttggacccagcgg	10	13	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	88425757	88425757	G	A	SNP	FABP1	ENST00000295834	human	ensembl	69_37n	-1	known	nonsense	c.178	p.Q60*	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP1	HGNC	ENSG00000163586	73	0	0	47	15	24.19	-	-	-	A	88425757	G	A	88425757	4	1	241	1	0	0	0	0	0	1	0	0	5395	1357	47	4	217	4	FABP1	2	88425757	Nonsense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		88425757	154773616	17	23299										
RGPD3	0	genome.wustl.edu	37	chr2	107049424	107049424	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	acttcttggcgaatcattttCagtaaagaattctgatcttc	6	8	5	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	107049424	107049424	C	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.2436	p.L812	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	130	0	0	74	25	25.25	-	-	-	A	107049424	C	A	107049424	2	1	241	1	0	0	0	0	0	0	0	1	13370	813	29	2		2	RGPD3	2	107049424	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	18623667	107049424	136149949	18	23300										
TTN	0	genome.wustl.edu	37	chr2	179435608	179435608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	taaacactcctgcggcatttCgggctataacccggaactca	8	13	1	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	179435608	179435608	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.67547	p.R22516P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	63	31	32.98	-	-	-	G	179435608	C	G	179435608	3	3	241	1	0	0	0	0	1	0	0	0	16832	884	31	3	32876	3	TTN	2	179435608	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	72386184	179435608	63763765	19	23301										
SF3B1	0	genome.wustl.edu	37	chr2	198267493	198267493	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgttgtgttacggacatactCatccatgttatctatatcag	7	8	3	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	198267493	198267493	C	G	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.1864	p.E622Q	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	47	0	0	29	15	34.09	-	-	-	G	198267493	C	G	198267493	3	3	241	1	0	0	0	0	1	0	0	0	14237	835	29	2	2098	2	SF3B1	2	198267493	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	18831885	198267493	44931880	20	23302										
SLC16A14	0	genome.wustl.edu	37	chr2	230910840	230910840	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	acgatttctgggaggtgaatGaaggggatgacaaagctgct	15	5	1	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	230910840	230910840	G	A	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	silent	c.1002	p.F334	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	49	0	0	26	7	21.21	-	-	-	A	230910840	G	A	230910840	2	1	241	1	0	0	0	0	0	0	0	1	14496	1281	45	2		2	SLC16A14	2	230910840	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	32643347	230910840	12288533	21	23303										
FARP2	0	genome.wustl.edu	37	chr2	242402844	242402844	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tcccatctatgagttccacaGaggcttcctgcgcgaggtgg	12	12	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	2	242402844	242402844	G	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	missense	c.1772	p.R591K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	27	0	0	30	6	16.67	-	-	-	A	242402844	G	A	242402844	3	1	241	1	0	0	0	0	1	0	0	0	5723	942	33	2	1830	2	FARP2	2	242402844	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	11492004	242402844	796529	22	23304										
NICN1	0	genome.wustl.edu	37	chr3	49462495	49462495	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gtctgggagaccctgctccaGaaggaggggtcagtggccat	16	10	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	3	49462495	49462495	G	A	SNP	NICN1	ENST00000422593	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	NICN1	HGNC	ENSG00000145029	31	0	0	16	8	33.33	-	-	-	A	49462495	G	A	49462495	1	1	241	0	1	0	0	0	0	0	0	0	10485	957	33	2		2	NICN1	3	49462495	RNA	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		49462495	148559935	23	23305										
PBRM1	0	genome.wustl.edu	37	chr3	52643679	52643679	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tagatcaaagactccggctcAttgtatgtacaggcattatt	8	8	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	3	52643679	52643679	A	G	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	silent	c.2217	p.N739	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	66	0	0	35	8	18.6	-	-	-	G	52643679	A	G	52643679	2	3	241	1	0	0	0	0	0	0	0	1	11564	214	8	5		5	PBRM1	3	52643679	Silent	SNP	A	TCGA-AC-A2B8-01A-11D-A17D-09	3181184	52643679	145378751	24	23306										
GRAMD1C	0	genome.wustl.edu	37	chr3	113623050	113623050	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gaaaaattatccaagtcaatCagttttaccagtgaatcaat	5	7	3	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	3	113623050	113623050	C	T	SNP	GRAMD1C	ENST00000358160	human	ensembl	69_37n	1	known	silent	c.720	p.I240	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1C	HGNC	ENSG00000178075	67	0	0	31	12	27.91	-	-	-	T	113623050	C	T	113623050	2	4	241	1	0	0	0	0	0	0	0	1	6800	816	29	2		2	GRAMD1C	3	113623050	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	60979371	113623050	84399380	25	23307										
CCDC48	0	genome.wustl.edu	37	chr3	128755858	128755858	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gtggaagagaatgagcacctGaggctggagctgcagatggt	17	6	0	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	3	128755858	128755858	G	C	SNP	CCDC48	ENST00000436022	human	ensembl	69_37n	1	known	silent	c.177	p.L59	1.000	NULL	NULL	-	no_errors	CCDC48	HGNC	ENSG00000114654	34	0	0	13	5	27.78	-	-	-	C	128755858	G	C	128755858	2	2	241	1	0	0	0	0	0	0	0	1	2846	1277	45	2		2	CCDC48	3	128755858	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	15132808	128755858	69266572	26	23308										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	68	0	0	25	28	52.83	-	-	-	A	178936091	G	A	178936091	3	1	241	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	50180233	178936091	19086339	27	23309										
HTT	0	genome.wustl.edu	37	chr4	3216854	3216854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tagttgcagtgcagcctggaGagcagcttcttagtccagaa	12	9	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	4	3216854	3216854	G	A	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.6970	p.E2324K	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	73	0	0	25	12	32.43	-	-	-	A	3216854	G	A	3216854	3	1	241	1	0	0	0	0	1	0	0	0	7511	943	33	2	7172	2	HTT	4	3216854	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		3216854	187937422	28	23310										
EVC	0	genome.wustl.edu	37	chr4	5803792	5803792	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	catggaggaccacgaggagaGaaaactgcagcacctgaaga	13	9	0	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	4	5803792	5803792	G	C	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	missense	c.2420	p.R807T	0.014	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	37	0	0	28	8	22.22	-	-	-	C	5803792	G	C	5803792	3	2	241	1	0	0	0	0	1	0	0	0	5322	942	33	2	2482	2	EVC	4	5803792	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	2586938	5803792	185350484	29	23311										
CLGN	0	genome.wustl.edu	37	chr4	141321646	141321646	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaaatgaagtttataatcttCtccacatttatctggtccaa	4	8	3	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	4	141321646	141321646	C	T	SNP	CLGN	ENST00000325617	human	ensembl	69_37n	-1	known	missense	c.559	p.E187K	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132	64	0	0	36	16	30.77	-	-	-	T	141321646	C	T	141321646	3	4	241	1	0	0	0	0	1	0	0	0	3554	922	32	2	1309	2	CLGN	4	141321646	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	135517854	141321646	49832630	30	23312										
SLCO4C1	0	genome.wustl.edu	37	chr5	101631645	101631645	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	caagaggcagtagtgaagcaGaaagcctccaggtgtgttgc	14	8	0	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	101631645	101631645	G	A	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	silent	c.322	p.L108	0.432	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	38	0	0	19	4	17.39	-	-	-	A	101631645	G	A	101631645	2	1	241	1	0	0	0	0	0	0	0	1	14819	933	33	2		2	SLCO4C1	5	101631645	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		101631645	79283615	31	23313										
PJA2	0	genome.wustl.edu	37	chr5	108714508	108714508	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctaactcttcaaactcatctCttacttcacagttaaatgag	3	11	5	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	108714508	108714508	C	T	SNP	PJA2	ENST00000361189	human	ensembl	69_37n	-1	known	missense	c.680	p.R227K	0.122	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	58	0	0	45	7	13.46	-	-	-	T	108714508	C	T	108714508	3	4	241	1	0	0	0	0	1	0	0	0	12036	913	32	2	1474	2	PJA2	5	108714508	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	7082863	108714508	72200752	32	23314										
PDLIM4	0	genome.wustl.edu	37	chr5	131598453	131598453	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cctcacactgtctgtgagcaGgtatgcacaggtgggctggg	15	10	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	131598453	131598453	G	C	SNP	PDLIM4	ENST00000253754	human	ensembl	69_37n	1	known	missense	c.245	p.R82T	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435	32	0	0	19	4	17.39	-	-	-	C	131598453	G	C	131598453	3	2	241	1	0	0	0	0	1	0	0	0	11755	1014	35	4	251	4	PDLIM4	5	131598453	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	22883945	131598453	49316807	33	23315										
PCDHGA1	0	genome.wustl.edu	37	chr5	140710703	140710703	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aataacgactccaggtaccaGagtctcattgccttttgggc	9	11	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	140710703	140710703	G	C	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.452	p.R151T	0.015	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	20	0	0	10	5	33.33	-	-	-	C	140710703	G	C	140710703	3	2	241	1	0	0	0	0	1	0	0	0	11623	942	33	2	454	2	PCDHGA1	5	140710703	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	9112250	140710703	40204557	34	23316										
CYFIP2	0	genome.wustl.edu	37	chr5	156817670	156817670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gggaaggatgaaatcattaaGaatgtggtgagcaggctggt	16	3	1	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	156817670	156817670	G	C	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.3663	p.K1221N	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	26	0	0	18	6	25	-	-	-	C	156817670	G	C	156817670	3	2	241	1	0	0	0	0	1	0	0	0	4169	933	33	2	3702	2	CYFIP2	5	156817670	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	16106967	156817670	24097590	35	23317										
NSD1	0	genome.wustl.edu	37	chr5	176666775	176666775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aggaaattatgaaagtaaacGtcaaagaaaaccaactaaga	7	5	1	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	5	176666775	176666775	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.4211	p.R1404H	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	44	0	0	25	8	24.24	-	-	-	A	176666775	G	A	176666775	3	1	241	1	0	0	0	0	1	0	0	0	10742	1145	40	1	4237	1	NSD1	5	176666775	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	19849105	176666775	4248485	36	23318										
SENP6	0	genome.wustl.edu	37	chr6	76380360	76380360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	agctttaagctgccaaagttCctttgacagtgtcattttaa	7	8	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	6	76380360	76380360	C	T	SNP	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	missense	c.1316	p.S439F	0.830	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	79	0	0	42	15	26.32	-	-	-	T	76380360	C	T	76380360	3	4	241	1	0	0	0	0	1	0	0	0	14138	855	30	2	1358	2	SENP6	6	76380360	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		76380360	94734707	37	23319										
MAP3K5	0	genome.wustl.edu	37	chr6	136990511	136990511	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tcctgactgtagtgttggctCagattcaaatgcctttttga	9	8	2	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	6	136990511	136990511	C	T	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.1276	p.E426K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	91	0	0	43	11	20.37	-	-	-	T	136990511	C	T	136990511	3	4	241	1	0	0	0	0	1	0	0	0	9324	835	29	2	2940	2	MAP3K5	6	136990511	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	60610151	136990511	34124556	38	23320										
TYW1	0	genome.wustl.edu	37	chr7	66463173	66463173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atttgtgtccagattgtcatCaagacgcaggtaagtggagt	12	6	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	7	66463173	66463173	C	G	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	missense	c.126	p.I42M	0.995	NULL	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874	125	0	0	69	25	26.6	-	-	-	G	66463173	C	G	66463173	3	3	241	1	0	0	0	0	1	0	0	0	16915	816	29	2	132	2	TYW1	7	66463173	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		66463173	92675490	39	23321										
WBSCR16	0	genome.wustl.edu	37	chr7	74486513	74486513	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctttgttgagtcccatccccCagactttcgtaacatccgca	6	15	0	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	7	74486513	74486513	C	T	SNP	WBSCR16	ENST00000329959	human	ensembl	69_37n	-1	known	nonsense	c.395	p.W132*	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	WBSCR16	HGNC	ENSG00000174374	51	0	0	44	17	27.87	-	-	-	T	74486513	C	T	74486513	4	4	241	1	0	0	0	0	0	1	0	0	17360	595	21	4	1039	4	WBSCR16	7	74486513	Nonsense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	8023340	74486513	84652150	40	23322										
STEAP1	0	genome.wustl.edu	37	chr7	89790576	89790576	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gcatgcaatttatagtctgtCttacccaatgaggcgatcct	8	10	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	7	89790576	89790576	C	G	SNP	STEAP1	ENST00000297205	human	ensembl	69_37n	1	known	missense	c.542	p.S181C	0.997	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647	68	0	0	54	16	22.86	-	-	-	G	89790576	C	G	89790576	3	3	241	1	0	0	0	0	1	0	0	0	15368	913	32	2	548	2	STEAP1	7	89790576	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	15304063	89790576	69348087	41	23323										
TRPV6	0	genome.wustl.edu	37	chr7	142573303	142573303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gcttgagggggcggtagatgCagcacatggtgaagcagatg	18	6	0	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	7	142573303	142573303	C	T	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	missense	c.1040	p.C347Y	1.000	prints_TRPV5/TRPV6_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	54	0	0	29	13	30.95	-	-	-	T	142573303	C	T	142573303	3	4	241	1	0	0	0	0	1	0	0	0	16696	710	25	4	1169	4	TRPV6	7	142573303	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	52782727	142573303	16565360	42	23324										
WRN	0	genome.wustl.edu	37	chr8	30969302	30969302	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ttcaggatctgcagccatttCttgtcaaaacaaggtaagga	9	8	4	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	8	30969302	30969302	C	G	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	missense	c.2260	p.L754V	1.000	pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	46	0	0	17	14	45.16	-	-	-	G	30969302	C	G	30969302	3	3	241	1	0	0	0	0	1	0	0	0	17499	913	32	2	2330	2	WRN	8	30969302	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		30969302	115394720	43	23325										
KIAA0146	0	genome.wustl.edu	37	chr8	48309073	48309073	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gatgcaagacagattatggaGagactgatagatccaaggac	12	6	0	5			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	8	48309073	48309073	G	A	SNP	KIAA0146	ENST00000297423	human	ensembl	69_37n	1	known	silent	c.663	p.E221	0.005	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	44	0	0	22	5	18.52	-	-	-	A	48309073	G	A	48309073	2	1	241	1	0	0	0	0	0	0	0	1	8209	933	33	2		2	KIAA0146	8	48309073	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	17339771	48309073	98054949	44	23326										
CYP7A1	0	genome.wustl.edu	37	chr8	59404035	59404035	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tcttattccagccatgtattCacaaatgcttgaatttatat	4	8	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	8	59404035	59404035	C	T	SNP	CYP7A1	ENST00000301645	human	ensembl	69_37n	-1	known	silent	c.1514	p.*505	0.058	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910	40	0	0	15	10	40	-	-	-	T	59404035	C	T	59404035	2	4	241	1	0	0	0	0	0	0	0	1	4227	837	29	2		2	CYP7A1	8	59404035	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	11094962	59404035	86959987	45	23327										
TMEM55A	0	genome.wustl.edu	37	chr8	92021021	92021021	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gtgttgaacctcagttccatCcactgtaaaataaacaaaga	6	9	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	8	92021021	92021021	C	T	SNP	TMEM55A	ENST00000285419	human	ensembl	69_37n	-1	known	nonsense	c.489	p.W163*	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55A	HGNC	ENSG00000155099	116	0	0	53	10	15.87	-	-	-	T	92021021	C	T	92021021	4	4	241	1	0	0	0	0	0	1	0	0	16276	856	30	2	296	2	TMEM55A	8	92021021	Nonsense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	32616986	92021021	54343001	46	23328										
CSMD3	0	genome.wustl.edu	37	chr8	113662562	113662562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ccagggtccaaacaagaataCgtgttcactgtaacacctgg	9	11	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	8	113662562	113662562	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.3021	p.T1007	0.249	superfamily_Complement_control_module	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	44	0	0	26	14	35	-	-	-	T	113662562	C	T	113662562	2	4	241	1	0	0	0	0	0	0	0	1	3978	523	19	1		1	CSMD3	8	113662562	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	21641541	113662562	32701460	47	23329										
HSPA5	0	genome.wustl.edu	37	chr9	128003098	128003098	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gccaatcagacgttccccttCaggagtgaaggcgacatagg	12	11	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	9	128003098	128003098	C	T	SNP	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	missense	c.211	p.E71K	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	21	0	0	22	5	18.52	-	-	-	T	128003098	C	T	128003098	3	4	241	1	0	0	0	0	1	0	0	0	7467	835	29	2	1781	2	HSPA5	9	128003098	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		128003098	13210333	48	23330										
DHTKD1	0	genome.wustl.edu	37	chr10	12126636	12126636	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atttctattgaaacctcccaActtcagagccaggatgagaa	7	10	2	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	10	12126636	12126636	A	G	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	silent	c.408	p.Q136	0.997	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	60	0	0	34	6	15	-	-	-	G	12126636	A	G	12126636	2	3	241	1	0	0	0	0	0	0	0	1	4536	40	2	5		5	DHTKD1	10	12126636	Silent	SNP	A	TCGA-AC-A2B8-01A-11D-A17D-09		12126636	123408111	49	23331										
MYO3A	0	genome.wustl.edu	37	chr10	26359066	26359066	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaactatatattggatcaaaGagaactgccagtcctcctca	6	10	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	10	26359066	26359066	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.1197	p.K399	0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	53	0	0	29	8	21.62	-	-	-	A	26359066	G	A	26359066	2	1	241	1	0	0	0	0	0	0	0	1	10148	933	33	2		2	MYO3A	10	26359066	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	14232430	26359066	109175681	50	23332										
LRRC18	0	genome.wustl.edu	37	chr10	50121646	50121646	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atggagtctatgaatatttcCgactcacctggctttggaaa	9	8	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	10	50121646	50121646	C	T	SNP	LRRC18	ENST00000374160	human	ensembl	69_37n	-1	known	silent	c.555	p.S185	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC18	HGNC	ENSG00000165383	91	0	0	49	17	25.76	-	-	-	T	50121646	C	T	50121646	2	4	241	1	0	0	0	0	0	0	0	1	9040	639	23	1		1	LRRC18	10	50121646	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	23762580	50121646	85413101	51	23333										
PCDH15	0	genome.wustl.edu	37	chr10	55568927	55568927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cctcctcagagggtgtctctGactcagattcctcttctgta	8	13	5	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	10	55568927	55568927	G	A	SNP	PCDH15	ENST00000395445	human	ensembl	69_37n	-1	novel	missense	c.4883	p.S1628L	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	92	0	0	41	27	39.71	-	-	-	A	55568927	G	A	55568927	3	1	241	1	0	0	0	0	1	0	0	0	11584	1294	45	2	1033	2	PCDH15	10	55568927	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	5447281	55568927	79965820	52	23334										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105372651	105372651	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	caatcctggccacagctggaGagccctgggccagcctggag	14	14	0	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	10	105372651	105372651	G	C	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	missense	c.1217	p.S406C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	25	0	0	14	6	30	-	-	-	C	105372651	G	C	105372651	3	2	241	1	0	0	0	0	1	0	0	0	14345	942	33	2	2200	2	SH3PXD2A	10	105372651	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	49803724	105372651	30162096	53	23335										
SMPD1	0	genome.wustl.edu	37	chr11	6412070	6412070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tcgcatagtgccccggctccGagatgtctttgggtggggga	16	10	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	6412070	6412070	G	C	SNP	SMPD1	ENST00000342245	human	ensembl	69_37n	1	known	missense	c.242	p.R81P	0.223	pirsf_Sphingomy_PDE	pirsf_Sphingomy_PDE,pfam_Metallo_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311	29	0	0	20	4	16.67	-	-	-	C	6412070	G	C	6412070	3	2	241	1	0	0	0	0	1	0	0	0	14893	1058	37	3	244	3	SMPD1	11	6412070	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		6412070	128594446	54	23336										
SWAP70	0	genome.wustl.edu	37	chr11	9750971	9750973	+	In_Frame_Del	DEL	AAG	AAG	-													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ttgaaatcagtgcttcagatAagaagaagaaacaggagtgg							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	9750971	9750973	AAG	-	DEL	SWAP70	ENST00000318950	human	ensembl	69_37n	1	known	in_frame_del	c.871_873	p.K294in_frame_del	1.000:1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_HAND_2,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789	83	0	0	45	12	21.05	-	-	-	-	9750973	AAG	-	9750971	7	5	241	1	0	1	0	1	0	0	0	0	15516	363	13	0	893	0	SWAP70	11	9750971	In_Frame_Del	DEL	AAG	TCGA-AC-A2B8-01A-11D-A17D-09	3338901	9750971	125255545	55	23337										
LDHA	0	genome.wustl.edu	37	chr11	18428760	18428760	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgaaggtgactctgacttctGaggaagaggcccgtttgaag	14	7	2	6			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	18428760	18428760	G	A	SNP	LDHA	ENST00000540430	human	ensembl	69_37n	1	known	missense	c.1018	p.E340K	0.992	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333	52	0	0	30	11	26.83	-	-	-	A	18428760	G	A	18428760	3	1	241	1	0	0	0	0	1	0	0	0	8752	1291	45	2	1048	2	LDHA	11	18428760	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	8677789	18428760	116577756	56	23338										
DEPDC7	0	genome.wustl.edu	37	chr11	33054213	33054213	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atatttgttttatttttataGagtgacaaccgaatggttgt	8	3	0	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	33054213	33054213	G	C	SNP	DEPDC7	ENST00000241051	human	ensembl	69_37n	1	known	splice_site	c.1138-1	e7-1	1.000	-	-	-	no_errors	DEPDC7	HGNC	ENSG00000121690	50	0	0	28	9	24.32	-	-	-	C	33054213	G	C	33054213	5	2	241	1	0	0	0	0	0	0	1	0	4480	956	33	2	1213	2	DEPDC7	11	33054213	Splice_Site	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	14625453	33054213	101952303	57	23339										
CKAP5	0	genome.wustl.edu	37	chr11	46772131	46772131	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaaaatctcagctaagaaatCattcactttggcctttgatg	6	8	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	46772131	46772131	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.5512	p.D1838N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	129	0	0	57	28	32.94	-	-	-	T	46772131	C	T	46772131	3	4	241	1	0	0	0	0	1	0	0	0	3475	826	29	2	623	2	CKAP5	11	46772131	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	13717918	46772131	88234385	58	23340										
OR4D11	0	genome.wustl.edu	37	chr11	59271954	59271954	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tcagccatgagaagactgaaGagaagactcgtgccttctga	11	9	2	6			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	59271954	59271954	G	A	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	silent	c.906	p.K302	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	70	0	0	23	14	37.84	-	-	-	A	59271954	G	A	59271954	2	1	241	1	0	0	0	0	0	0	0	1	11128	933	33	2		2	OR4D11	11	59271954	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	12499823	59271954	75734562	59	23341										
PCF11	0	genome.wustl.edu	37	chr11	82876651	82876651	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ttgtgttttaggcagtttctCttagtgttcagcaggaaaca	10	6	2	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	11	82876651	82876651	C	G	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	missense	c.712	p.L238V	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	37	0	0	16	12	42.86	-	-	-	G	82876651	C	G	82876651	3	3	241	1	0	0	0	0	1	0	0	0	11646	913	32	2	730	2	PCF11	11	82876651	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	23604697	82876651	52129865	60	23342										
CD9	0	genome.wustl.edu	37	chr12	6344725	6344725	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gacgtactcgaaaccttcacCgtgaaggtaaactcagacca	8	12	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	12	6344725	6344725	C	G	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	silent	c.531	p.T177	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	65	0	0	24	13	35.14	-	-	-	G	6344725	C	G	6344725	2	3	241	1	0	0	0	0	0	0	0	1	3075	639	23	3		3	CD9	12	6344725	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		6344725	127507170	61	23343										
RND1	0	genome.wustl.edu	37	chr12	49251830	49251830	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ttcttgaaggtagaagagatGagttcagagcgactggggag	16	4	2	5			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	12	49251830	49251830	G	A	SNP	RND1	ENST00000309739	human	ensembl	69_37n	-1	known	silent	c.648	p.L216	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND1	HGNC	ENSG00000172602	85	0	0	34	20	37.04	-	-	-	A	49251830	G	A	49251830	2	1	241	1	0	0	0	0	0	0	0	1	13505	1277	45	2		2	RND1	12	49251830	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	42907105	49251830	84600065	62	23344										
MARS	0	genome.wustl.edu	37	chr12	57884133	57884133	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	agccccagcccagccccgctGagggaagggctgtcaccaat	12	16	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	12	57884133	57884133	G	A	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.634	p.E212K	0.232	NULL	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	35	0	0	30	8	21.05	-	-	-	A	57884133	G	A	57884133	3	1	241	1	0	0	0	0	1	0	0	0	9387	1291	45	2	656	2	MARS	12	57884133	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	8632303	57884133	75967762	63	23345										
ELK3	0	genome.wustl.edu	37	chr12	96641458	96641458	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gacatcggctccatcgccctCaacagcccagccctcccctc	6	22	1	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	12	96641458	96641458	C	T	SNP	ELK3	ENST00000228741	human	ensembl	69_37n	1	known	silent	c.948	p.L316	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELK3	HGNC	ENSG00000111145	25	0	0	13	9	40.91	-	-	-	T	96641458	C	T	96641458	2	4	241	1	0	0	0	0	0	0	0	1	5097	813	29	2		2	ELK3	12	96641458	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	38757325	96641458	37210437	64	23346										
KNTC1	0	genome.wustl.edu	37	chr12	123014620	123014620	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gtctcagaaacatgtggaatGatattgagctgctaacaaat	9	6	1	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	12	123014620	123014620	G	T	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.10	p.D4Y	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	55	0	0	26	11	29.73	-	-	-	T	123014620	G	T	123014620	3	4	241	1	0	0	0	0	1	0	0	0	8481	1290	45	2	12	2	KNTC1	12	123014620	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	26373162	123014620	10837275	65	23347										
ZMYM2	0	genome.wustl.edu	37	chr13	20600816	20600817	+	Frame_Shift_Del	DEL	AG	AG	-													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	caggttttttgatatgactcAgtgtataggtcctaatggat							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	13	20600816	20600817	AG	-	DEL	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	frame_shift_del	c.1649_1650	p.Q550fs	1.000:1.000	pfam_Znf_MYM	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	59	0	0	27	9	23.08	-	-	-	-	20600817	AG	-	20600816	7	5	241	1	0	1	0	1	0	0	0	0	17796	188	7	0	1671	0	ZMYM2	13	20600816	Frame_Shift_Del	DEL	AG	TCGA-AC-A2B8-01A-11D-A17D-09		20600816	94569062	66	23348										
FAM48A	0	genome.wustl.edu	37	chr13	37618235	37618235	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctgagatttttctaggagatCaaccaaaataggaggtaatt	9	5	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	13	37618235	37618235	C	T	SNP	FAM48A	ENST00000350612	human	ensembl	69_37n	-1	known	missense	c.376	p.D126N	1.000	pfam_Spt20	pfam_Spt20	-	no_errors	FAM48A	HGNC	ENSG00000102710	86	0	0	52	20	27.78	-	-	-	T	37618235	C	T	37618235	3	4	241	1	0	0	0	0	1	0	0	0	5618	826	29	2	2043	2	FAM48A	13	37618235	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	17017419	37618235	77551643	67	23349										
NUFIP1	0	genome.wustl.edu	37	chr13	45554075	45554075	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gtgtgcagtaaaagagcaatCtaattcagggcactatgagt	11	6	2	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	13	45554075	45554075	C	G	SNP	NUFIP1	ENST00000379161	human	ensembl	69_37n	-1	known	missense	c.607	p.D203H	0.993	smart_Znf_C2H2-like	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635	42	0	0	34	8	19.05	-	-	-	G	45554075	C	G	45554075	3	3	241	1	0	0	0	0	1	0	0	0	10821	913	32	2	908	2	NUFIP1	13	45554075	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	7935840	45554075	69615803	68	23350										
SYNE2	0	genome.wustl.edu	37	chr14	64520304	64520304	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaaactcttctgaagcgagtGatgtggagacaaaactacgt	10	7	2	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	14	64520304	64520304	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.9673	p.D3225N	0.001	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	52	0	0	33	10	23.26	-	-	-	A	64520304	G	A	64520304	3	1	241	1	0	0	0	0	1	0	0	0	15538	1290	45	2	9859	2	SYNE2	14	64520304	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		64520304	42829236	69	23351										
GJD2	0	genome.wustl.edu	37	chr15	35045503	35045503	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cacaaacatggtctgctcatCatcgtacaccgtctccccca	5	17	4	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	35045503	35045503	C	A	SNP	GJD2	ENST00000290374	human	ensembl	69_37n	-1	known	missense	c.142	p.D48Y	1.000	pfam_Connexin_N,smart_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248	32	0	0	21	5	19.23	-	-	-	A	35045503	C	A	35045503	3	1	241	1	0	0	0	0	1	0	0	0	6469	826	29	2	827	2	GJD2	15	35045503	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		35045503	67485889	70	23352										
TP53BP1	0	genome.wustl.edu	37	chr15	43701882	43701882	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cttcaaggatatagccagctCctgctcgaagctgggattct	10	11	2	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	43701882	43701882	C	G	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.5363	p.G1788A	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	61	0	0	28	9	24.32	-	-	-	G	43701882	C	G	43701882	3	3	241	1	0	0	0	0	1	0	0	0	16479	855	30	2	586	2	TP53BP1	15	43701882	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	8656379	43701882	58829510	71	23353										
DMXL2	0	genome.wustl.edu	37	chr15	51857358	51857358	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gttttaagccactggcacttGagttgctgaaatacgtagac	10	8	0	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	51857358	51857358	G	C	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	silent	c.291	p.L97	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	58	0	0	26	7	21.21	-	-	-	C	51857358	G	C	51857358	2	2	241	1	0	0	0	0	0	0	0	1	4631	1277	45	2		2	DMXL2	15	51857358	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	8155476	51857358	50674034	72	23354										
FAM81A	0	genome.wustl.edu	37	chr15	59808952	59808952	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atggtcagagaacaaggcaaGaagaggagaagatgcacggg	16	5	1	5			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	59808952	59808952	G	C	SNP	FAM81A	ENST00000288228	human	ensembl	69_37n	1	known	missense	c.895	p.E299Q	0.103	NULL	superfamily_Ferritin/RR-like	-	no_errors	FAM81A	HGNC	ENSG00000157470	45	0	0	19	11	36.67	-	-	-	C	59808952	G	C	59808952	3	2	241	1	0	0	0	0	1	0	0	0	5673	943	33	2	921	2	FAM81A	15	59808952	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	7951594	59808952	42722440	73	23355										
ZNF592	0	genome.wustl.edu	37	chr15	85325970	85325970	+	Frame_Shift_Del	DEL	A	A	-													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cctttgacatcccagaccccAccagccttgatgccaaggag							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	85325970	85325970	A	-	DEL	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	frame_shift_del	c.64	p.T22fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	39	0	0	10	9	40.91	-	-	-	-	85325970	A	-	85325970	7	5	241	1	0	1	0	1	0	0	0	0	18118	159	6	0	66	0	ZNF592	15	85325970	Frame_Shift_Del	DEL	A	TCGA-AC-A2B8-01A-11D-A17D-09	25517018	85325970	17205422	74	23356										
ZNF592	0	genome.wustl.edu	37	chr15	85326050	85326050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaacctccaggcatatgtatGgatgaaagtgtgtccttgtc	10	8	0	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	85326050	85326050	G	A	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.144	p.M48I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	39	0	0	12	18	60	-	-	-	A	85326050	G	A	85326050	3	1	241	1	0	0	0	0	1	0	0	0	18118	1348	47	4	146	4	ZNF592	15	85326050	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	80	85326050	17205342	75	23357										
PCSK6	0	genome.wustl.edu	37	chr15	101971661	101971661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ggcagcgactgttcttgtcgCcacaatgctgtaagcacgaa	11	11	1	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	15	101971661	101971661	C	T	SNP	PCSK6	ENST00000348070	human	ensembl	69_37n	-1	known	missense	c.518	p.G173D	0.068	superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_PLAC,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel,pfscan_PLAC	-	no_errors	PCSK6	HGNC	ENSG00000140479	33	0	0	20	17	45.95	-	-	-	T	101971661	C	T	101971661	3	4	241	1	0	0	0	0	1	0	0	0	11677	739	26	4	2943	4	PCSK6	15	101971661	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	16645611	101971661	559731	76	23358										
TSC2	0	genome.wustl.edu	37	chr16	2126577	2126577	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gagtactagtctcaacgagaGacccaagaggtacggcctgc	12	11	1	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	16	2126577	2126577	G	A	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	missense	c.2828	p.R943K	1.000	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	30	0	0	21	13	38.24	-	-	-	A	2126577	G	A	2126577	3	1	241	1	0	0	0	0	1	0	0	0	16702	942	33	2	2922	2	TSC2	16	2126577	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		2126577	88228176	77	23359										
MKL2	0	genome.wustl.edu	37	chr16	14234535	14234535	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	catcttgctccaagtcctcaGagtgaagctgtggctcatga	10	11	3	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	16	14234535	14234535	G	C	SNP	MKL2	ENST00000318282	human	ensembl	69_37n	1	known	missense	c.72	p.Q24H	0.671	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	63	0	0	43	10	18.87	-	-	-	C	14234535	G	C	14234535	3	2	241	1	0	0	0	0	1	0	0	0	9673	933	33	2	74	2	MKL2	16	14234535	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	12107958	14234535	76120218	78	23360										
CDH8	0	genome.wustl.edu	37	chr16	62055264	62055264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	taatccataatattattaatGgagtccagagatccaagagc	7	7	0	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	16	62055264	62055264	G	T	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.44	p.P15Q	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	40	0	0	31	4	11.43	-	-	-	T	62055264	G	T	62055264	3	4	241	1	0	0	0	0	1	0	0	0	3145	1348	47	4	2399	4	CDH8	16	62055264	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	47820729	62055264	28299489	79	23361										
RFFL	0	genome.wustl.edu	37	chr17	33353466	33353466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	agcctgttggggaagggaagGagctgtacccagggttggaa	18	6	0	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	17	33353466	33353466	G	A	SNP	RFFL	ENST00000315249	human	ensembl	69_37n	-1	known	missense	c.107	p.S36F	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RFFL	HGNC	ENSG00000092871	37	0	0	18	8	30.77	-	-	-	A	33353466	G	A	33353466	3	1	241	1	0	0	0	0	1	0	0	0	13333	1174	41	2	1008	2	RFFL	17	33353466	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		33353466	47841744	80	23362										
ERN1	0	genome.wustl.edu	37	chr17	62137877	62137878	+	Frame_Shift_Del	DEL	AT	AT	-													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gcaggaatcacattttcccgAtgtttgggtagattgttggg							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	17	62137877	62137878	AT	-	DEL	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	frame_shift_del	c.1158_1157	p.H386fs	0.109:0.220	NULL	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	116	0	0	55	16	21.05	-	-	-	-	62137878	AT	-	62137877	7	5	241	1	0	1	0	1	0	0	0	0	5274	330	12	0	1823	0	ERN1	17	62137877	Frame_Shift_Del	DEL	AT	TCGA-AC-A2B8-01A-11D-A17D-09	28784411	62137877	19057333	81	23363										
TRIM65	0	genome.wustl.edu	37	chr17	73888451	73888451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gcagccgctgctcctcgtctCgagcctgtgccagcgcctgc	12	18	1	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	17	73888451	73888451	C	T	SNP	TRIM65	ENST00000269383	human	ensembl	69_37n	-1	known	missense	c.641	p.R214Q	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM65	HGNC	ENSG00000141569	13	0	0	9	4	30.77	-	-	-	T	73888451	C	T	73888451	3	4	241	1	0	0	0	0	1	0	0	0	16635	884	31	1	928	1	TRIM65	17	73888451	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	11750574	73888451	7306759	82	23364										
SYT4	0	genome.wustl.edu	37	chr18	40850187	40850189	+	RNA	DEL	CAA	CAA	-													0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctaattcaatccatttctagCaacaacaacaacaacaaaaa							TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	18	40850187	40850189	CAA	-	DEL	SYT4	ENST00000585604	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.380:0.367:0.351	-	-	-	no_errors	SYT4	HGNC	ENSG00000132872	8	0	0	8	2	20	-	-	-	-	40850189	CAA	-	40850187	6	5	241	0	1	1	0	1	0	0	0	0	15568	725	25	0		0	SYT4	18	40850187	RNA	DEL	CAA	TCGA-AC-A2B8-01A-11D-A17D-09		40850187	37227061	83	23365										
SETBP1	0	genome.wustl.edu	37	chr18	42281646	42281646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	aaagattcagaccacaaagcGggctaagaaacccccaaaga	8	11	1	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	18	42281646	42281646	G	A	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.335	p.R112Q	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	35	0	0	23	9	28.12	-	-	-	A	42281646	G	A	42281646	3	1	241	1	0	0	0	0	1	0	0	0	14217	1116	39	1	337	1	SETBP1	18	42281646	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	1431459	42281646	35795602	84	23366										
CNDP1	0	genome.wustl.edu	37	chr18	72234494	72234494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cctgtgaatatcaaattcatCattgaggggatggaagaggc	12	6	3	3			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	18	72234494	72234494	C	G	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	missense	c.582	p.I194M	0.009	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	47	0	0	37	9	19.57	-	-	-	G	72234494	C	G	72234494	3	3	241	1	0	0	0	0	1	0	0	0	3623	816	29	2	604	2	CNDP1	18	72234494	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	29952848	72234494	5842754	85	23367										
TJP3	0	genome.wustl.edu	37	chr19	3743985	3743985	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	gggacccgtggccgacattgCtatgcagaagttgactgctg	14	10	0	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	3743985	3743985	C	G	SNP	TJP3	ENST00000262968	human	ensembl	69_37n	1	known	missense	c.1991	p.A664G	0.982	smart_Guanylate_kin/L-typ_Ca_channel	pfam_PDZ,pfam_SH3_2,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	82	0	0	39	13	25	-	-	-	G	3743985	C	G	3743985	3	3	241	1	0	0	0	0	1	0	0	0	16026	797	28	4	2045	4	TJP3	19	3743985	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		3743985	55384998	86	23368										
DPP9	0	genome.wustl.edu	37	chr19	4702043	4702043	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgtaccgggcactcacctgtCctggggtaccgatacgagtc	12	13	1	0			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	4702043	4702043	C	G	SNP	DPP9	ENST00000262960	human	ensembl	69_37n	-1	known	missense	c.1008	p.R336S	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP9	HGNC	ENSG00000142002	34	0	0	12	9	42.86	-	-	-	G	4702043	C	G	4702043	3	3	241	1	0	0	0	0	1	0	0	0	4768	854	30	2	1726	2	DPP9	19	4702043	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	958058	4702043	54426940	87	23369										
ZNF558	0	genome.wustl.edu	37	chr19	8923821	8923821	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	acctggacaggtgcttggtaGaattcctctttcctctgtca	9	11	3	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	8923821	8923821	G	A	SNP	ZNF558	ENST00000301475	human	ensembl	69_37n	-1	known	silent	c.325	p.L109	0.504	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF558	HGNC	ENSG00000167785	122	0	0	95	26	21.49	-	-	-	A	8923821	G	A	8923821	2	1	241	1	0	0	0	0	0	0	0	1	18085	933	33	2		2	ZNF558	19	8923821	Silent	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	4221778	8923821	50205162	88	23370										
OR10H1	0	genome.wustl.edu	37	chr19	15918842	15918842	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	actgtggagtgattggctctCtgcatggaggctgtgcctgg	16	8	1	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	15918842	15918842	C	T	SNP	OR10H1	ENST00000334920	human	ensembl	69_37n	-1	known	silent	c.6	p.Q2	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H1	HGNC	ENSG00000186723	34	0	0	20	12	36.36	-	-	-	T	15918842	C	T	15918842	2	4	241	1	0	0	0	0	0	0	0	1	10978	912	32	2		2	OR10H1	19	15918842	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	6995021	15918842	43210141	89	23371										
MAG	0	genome.wustl.edu	37	chr19	35786323	35786323	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctgtacagaatgatattcctCacggcactgcctctgttctg	8	12	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	35786323	35786323	C	T	SNP	MAG	ENST00000392213	human	ensembl	69_37n	1	known	silent	c.12	p.L4	0.998	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MAG	HGNC	ENSG00000105695	62	0	0	37	9	19.57	-	-	-	T	35786323	C	T	35786323	2	4	241	1	0	0	0	0	0	0	0	1	9229	813	29	2		2	MAG	19	35786323	Silent	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	19867481	35786323	23342660	90	23372										
PSG8	0	genome.wustl.edu	37	chr19	43268108	43268108	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgtccagttactcctctattCtcatcacctcccattatgat	3	14	3	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	43268108	43268108	C	G	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.390	p.E130D	0.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	193	0	0	121	28	18.79	-	-	-	G	43268108	C	G	43268108	3	3	241	1	0	0	0	0	1	0	0	0	12741	912	32	2	927	2	PSG8	19	43268108	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	7481785	43268108	15860875	91	23373										
ZNF155	0	genome.wustl.edu	37	chr19	44500381	44500381	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	atcataaataactctcagttCtttgaaaatggtgatgtccc	6	8	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	19	44500381	44500381	C	G	SNP	ZNF155	ENST00000270014	human	ensembl	69_37n	1	known	missense	c.372	p.F124L	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF155	HGNC	ENSG00000204920	47	0	0	34	5	12.82	-	-	-	G	44500381	C	G	44500381	3	3	241	1	0	0	0	0	1	0	0	0	17832	912	32	2	386	2	ZNF155	19	44500381	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	1232273	44500381	14628602	92	23374										
RBL1	0	genome.wustl.edu	37	chr20	35684594	35684594	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	tgttgattgagtatagtgttGacagaaagtctctcctattc	9	6	1	4			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	20	35684594	35684594	G	C	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.1318	p.Q440E	0.998	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	102	0	0	58	35	37.63	-	-	-	C	35684594	G	C	35684594	3	2	241	1	0	0	0	0	1	0	0	0	13192	1299	45	2	1949	2	RBL1	20	35684594	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09		35684594	27340926	93	23375										
TBX22	0	genome.wustl.edu	37	chrX	79278589	79278589	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	taagacagagccctcaacatCtgcttcctctggctgcggca	9	14	3	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	X	79278589	79278589	C	T	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.206	p.S69F	0.029	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	38	0	0	23	16	41.03	-	-	-	T	79278589	C	T	79278589	3	4	241	1	0	0	0	0	1	0	0	0	15753	913	32	2	212	2	TBX22	23	79278589	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09		79278589	75991971	94	23376										
ODZ1	0	genome.wustl.edu	37	chrX	123518123	123518123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	cctcagaaagccatcttcatCcattttatactgaatttctc	3	12	4	2			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	X	123518123	123518123	C	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.6658	p.D2220Y	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	44	0	0	23	11	32.35	-	-	-	A	123518123	C	A	123518123	3	1	241	1	0	0	0	0	1	0	0	0	10907	855	30	2	1552	2	ODZ1	23	123518123	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	44239534	123518123	31752437	95	23377										
GPR112	0	genome.wustl.edu	37	chrX	135475730	135475730	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	actgtgccttttgggattttGagaataatagtaagtatttt	9	3	0	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	X	135475730	135475730	G	C	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.8071	p.E2691Q	0.505	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	153	0	0	84	25	22.94	-	-	-	C	135475730	G	C	135475730	3	2	241	1	0	0	0	0	1	0	0	0	6679	1291	45	2	8129	2	GPR112	23	135475730	Missense_Mutation	SNP	G	TCGA-AC-A2B8-01A-11D-A17D-09	11957607	135475730	19794830	96	23378										
RPL10	0	genome.wustl.edu	37	chrX	153628244	153628244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.583333333333333	56	6.35828061291229e-20	3.61776303666851	3.76110074626866	3.52415473652147	0.099194479987793	0.5224358974359	41	ctccaccccttccacgtcatCcgcatcaacaagatgttgtc	5	17	2	1			TCGA-AC-A2B8-01A-11D-A17D-09	TCGA-AC-A2B8-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	006faa97-572b-4015-a803-e1c9fa4a1be2	ca7ebf6b-a461-462e-9dbd-323b5aeba931	X	153628244	153628244	C	G	SNP	RPL10	ENST00000344746	human	ensembl	69_37n	1	known	missense	c.291	p.I97M	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403	52	0	0	43	10	18.87	-	-	-	G	153628244	C	G	153628244	3	3	241	1	0	0	0	0	1	0	0	0	13640	845	30	2	305	2	RPL10	23	153628244	Missense_Mutation	SNP	C	TCGA-AC-A2B8-01A-11D-A17D-09	18152514	153628244	1642316	97	23379										
CYP4B1	0	genome.wustl.edu	37	chr1	47279654	47279654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgccttgtgtccttccagTaccataatgacttcatctac	6	13	2	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	47279654	47279654	T	C	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	missense	c.694	p.Y232H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	47	0	0	8	12	60	-	-	-	C	47279654	T	C	47279654	3	2	242	1	0	0	0	0	1	0	0	0	4216	1638	57	5	716	5	CYP4B1	1	47279654	Missense_Mutation	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09		47279654	201970967	1	23380										
EVI5	0	genome.wustl.edu	37	chr1	93159433	93159433	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgggacaccatcaaactgAtgtggaatgaccttttgaaa	9	8	2	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	93159433	93159433	A	T	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	missense	c.1155	p.H385Q	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	19	0	0	13	9	40.91	-	-	-	T	93159433	A	T	93159433	3	4	242	1	0	0	0	0	1	0	0	0	5326	330	12	5	1317	5	EVI5	1	93159433	Missense_Mutation	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09	45879779	93159433	156091188	2	23381										
SHE	0	genome.wustl.edu	37	chr1	154456753	154456753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacagcgcttgtctgattcaGtgtgtatttgttgtctttgg	11	7	3	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	154456753	154456753	G	T	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	missense	c.1360	p.L454M	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	88	0	0	168	50	22.94	-	-	-	T	154456753	G	T	154456753	3	4	242	1	0	0	0	0	1	0	0	0	14365	1020	36	4	131	4	SHE	1	154456753	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	61297320	154456753	94793868	3	23382										
ARHGEF2	0	genome.wustl.edu	37	chr1	155917712	155917712	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgttcttcagtggggcacgGggcaggggggaggggccccc	20	10	2	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	155917712	155917712	G	A	SNP	ARHGEF2	ENST00000470541	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	12	0	0	43	10	18.87	-	-	-	A	155917712	G	A	155917712	1	1	242	0	1	0	0	0	0	0	0	0	905	1247	43	4		4	ARHGEF2	1	155917712	RNA	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	1460959	155917712	93332909	4	23383										
PAPPA2	0	genome.wustl.edu	37	chr1	176668662	176668662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggtaccaggttctccgcgAtcccccatttgccagtggtt	11	13	1	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	176668662	176668662	A	G	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.3173	p.D1058G	0.998	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	105	0	0	178	31	14.83	-	-	-	G	176668662	A	G	176668662	3	3	242	1	0	0	0	0	1	0	0	0	11506	333	12	5	3252	5	PAPPA2	1	176668662	Missense_Mutation	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09	20750950	176668662	72581959	5	23384										
ATP2B4	0	genome.wustl.edu	37	chr1	203696643	203696643	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agattgaccatgctgagatgGagctgcgccgaggccagatc	14	10	0	4			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	203696643	203696643	G	T	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	nonsense	c.3253	p.E1085*	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	95	0	0	107	45	29.41	-	-	-	T	203696643	G	T	203696643	4	4	242	1	0	0	0	0	0	1	0	0	1146	1175	41	2	3327	2	ATP2B4	1	203696643	Nonsense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	27027981	203696643	45553978	6	23385										
RYR2	0	genome.wustl.edu	37	chr1	237947087	237947087	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgttcttaaaactaaaggaTttgacgtcgtctgatacttt	7	6	2	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	237947087	237947087	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.12093	p.D4031	1.000	pfscan_EF_HAND_2	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	28	0	0	72	11	13.25	-	-	-	C	237947087	T	C	237947087	2	2	242	1	0	0	0	0	0	0	0	1	13855	1490	52	5		5	RYR2	1	237947087	Silent	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	34250444	237947087	11303534	7	23386										
KIF26B	0	genome.wustl.edu	37	chr1	245530213	245530213	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaggcatggaacgaccgggaCaaccgctgtgacatttgcgc	13	11	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	245530213	245530213	C	G	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.543	p.D181E	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	45	0	0	67	12	15.19	-	-	-	G	245530213	C	G	245530213	3	3	242	1	0	0	0	0	1	0	0	0	8347	477	17	4	553	4	KIF26B	1	245530213	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	7583126	245530213	3720408	8	23387										
OR2T27	0	genome.wustl.edu	37	chr1	248814106	248814106	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaggagaatgagggcaaagAgaagccaggggaaacgggcg	18	7	0	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	1	248814106	248814106	A	G	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.80	p.L27P	0.479	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	175	0	0	186	25	11.74	-	-	-	G	248814106	A	G	248814106	3	3	242	1	0	0	0	0	1	0	0	0	11094	304	11	5	876	5	OR2T27	1	248814106	Missense_Mutation	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09	3283893	248814106	436515	9	23388										
PNO1	0	genome.wustl.edu	37	chr2	68388819	68388819	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttgttttttaacagacttGtaaagaaaccaaggatgtta	7	4	0	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	2	68388819	68388819	G	C	SNP	PNO1	ENST00000263657	human	ensembl	69_37n	1	known	missense	c.362	p.C121S	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	PNO1	HGNC	ENSG00000115946	45	0	0	38	45	54.22	-	-	-	C	68388819	G	C	68388819	3	2	242	1	0	0	0	0	1	0	0	0	12235	1377	48	4	372	4	PNO1	2	68388819	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		68388819	174810554	10	23389										
FAM123C	0	genome.wustl.edu	37	chr2	131520327	131520327	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	agctcctggccgatgcatccTttggtctctgcagggccctg							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	2	131520327	131520327	T	-	DEL	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	frame_shift_del	c.682	p.F228fs	0.591	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	26	0	0	37	6	13.95	-	-	-	-	131520327	T	-	131520327	7	5	242	1	0	1	0	1	0	0	0	0	5464	1609	56	0	684	0	FAM123C	2	131520327	Frame_Shift_Del	DEL	T	TCGA-AC-A2BK-01A-11D-A21Q-09	63131508	131520327	111679046	11	23390										
CYTIP	0	genome.wustl.edu	37	chr2	158272420	158272420	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctccttggggataaagcaCtcatcatctgtactcgtctg	8	13	4	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	2	158272420	158272420	C	T	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	silent	c.849	p.E283	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	38	0	0	34	4	10.26	-	-	-	T	158272420	C	T	158272420	2	4	242	1	0	0	0	0	0	0	0	1	4238	564	20	4		4	CYTIP	2	158272420	Silent	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	26752093	158272420	84926953	12	23391										
TTN	0	genome.wustl.edu	37	chr2	179444796	179444796	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagcttgttttggagcactcAgttgtcactgtagaccagga	11	8	2	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	2	179444796	179444796	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.59514	p.T19838	0.828	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	25	0	0	22	13	37.14	-	-	-	C	179444796	A	C	179444796	2	2	242	1	0	0	0	0	0	0	0	1	16832	175	7	5		5	TTN	2	179444796	Silent	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09	21172376	179444796	63754577	13	23392										
INHA	0	genome.wustl.edu	37	chr2	220439596	220439596	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcctccaatagctctgagcCcctgctaggcctgctggcac	10	16	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	2	220439596	220439596	C	G	SNP	INHA	ENST00000243786	human	ensembl	69_37n	1	known	missense	c.449	p.P150R	0.002	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	78	0	0	29	26	47.27	-	-	-	G	220439596	C	G	220439596	3	3	242	1	0	0	0	0	1	0	0	0	7794	623	22	4	455	4	INHA	2	220439596	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	40994800	220439596	22759777	14	23393										
IRAK2	0	genome.wustl.edu	37	chr3	10276205	10276205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctgctccaggaagacgggCgtggagaacgtgatggcaaa	15	9	1	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	10276205	10276205	C	T	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	silent	c.1335	p.G445	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	61	0	0	2	15	88.24	-	-	-	T	10276205	C	T	10276205	2	4	242	1	0	0	0	0	0	0	0	1	7877	755	27	1		1	IRAK2	3	10276205	Silent	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		10276205	187746225	15	23394										
STAB1	0	genome.wustl.edu	37	chr3	52550707	52550707	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctgctaccacccctcccaGctgcgtgcaggactcggccg	11	18	0	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	52550707	52550707	G	A	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	splice_site	c.4287-1	e41-1	1.000	-	-	-	no_errors	STAB1	HGNC	ENSG00000010327	27	0	0	8	11	57.89	-	-	-	A	52550707	G	A	52550707	5	1	242	1	0	0	0	0	0	0	1	0	15328	985	34	4	4448	4	STAB1	3	52550707	Splice_Site	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	42274502	52550707	145471723	16	23395										
PROS1	0	genome.wustl.edu	37	chr3	93617363	93617363	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atagcaagtgtaacctccagGgtaattgacacaaagctgag	10	8	0	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	93617363	93617363	G	T	SNP	PROS1	ENST00000394236	human	ensembl	69_37n	-1	known	missense	c.778	p.P260T	0.994	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	65	0	0	55	14	20.29	-	-	-	T	93617363	G	T	93617363	3	4	242	1	0	0	0	0	1	0	0	0	12639	1232	43	4	1284	4	PROS1	3	93617363	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	41066656	93617363	104405067	17	23396										
KIAA2018	0	genome.wustl.edu	37	chr3	113380216	113380216	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcagtaattcaatatatcGgccattttctttttggattt	5	6	3	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	113380216	113380216	G	A	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	nonsense	c.313	p.R105*	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	30	0	0	76	20	20.83	-	-	-	A	113380216	G	A	113380216	4	1	242	1	0	0	0	0	0	1	0	0	8320	1124	39	1	6428	1	KIAA2018	3	113380216	Nonsense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	19762853	113380216	84642214	18	23397										
PLCH1	0	genome.wustl.edu	37	chr3	155200812	155200812	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggatcttttatacttgctttCccttttcttctgccatcttt	4	11	4	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	155200812	155200812	C	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	silent	c.3027	p.G1009	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	32	0	0	40	41	50	-	-	-	A	155200812	C	A	155200812	2	1	242	1	0	0	0	0	0	0	0	1	12111	842	30	2		2	PLCH1	3	155200812	Silent	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	41820596	155200812	42821618	19	23398										
MCF2L2	0	genome.wustl.edu	37	chr3	182897388	182897388	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	tcctcctcatcgcgttcttcTttttctccctggctgctttc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	182897388	182897388	T	-	DEL	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	frame_shift_del	c.3198	p.E1067fs	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	40	0	0	36	26	41.27	-	-	-	-	182897388	T	-	182897388	7	5	242	1	0	1	0	1	0	0	0	0	9451	1606	56	0	154	0	MCF2L2	3	182897388	Frame_Shift_Del	DEL	T	TCGA-AC-A2BK-01A-11D-A21Q-09	27696576	182897388	15125042	20	23399	217	3								
MCF2L2	0	genome.wustl.edu	37	chr3	182897394	182897394	+	Silent	SNP	T	T	A													0	0	1	0	0	0	1	1	0	tcatcgcgttcttctttttcTccctggctgctttctcccct							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	182897394	182897394	T	A	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	silent	c.3192	p.G1064	0.002	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	38	0	0	29	29	50	-	-	-	A	182897394	T	A	182897394	2	1	242	1	0	0	0	0	0	0	0	1	9451	1538	54	5		5	MCF2L2	3	182897394	Silent	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	6	182897394	15125036	21	23400	217	3								
MCF2L2	0	genome.wustl.edu	37	chr3	182897395	182897395	+	Missense_Mutation	SNP	C	C	T													0	0	1	0	0	0	1	1	0	catcgcgttcttctttttctCcctggctgctttctcccctc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	3	182897395	182897395	C	T	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.3191	p.G1064E	0.004	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	39	0	0	30	30	50	-	-	-	T	182897395	C	T	182897395	3	4	242	1	0	0	0	0	1	0	0	0	9451	855	30	2	161	2	MCF2L2	3	182897395	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	1	182897395	15125035	22	23401	217	3								
RUFY3	0	genome.wustl.edu	37	chr4	71668838	71668838	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctaacaataccctgaacaaAtatgtattgcctgaagctca	5	10	2	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	4	71668838	71668838	A	G	SNP	RUFY3	ENST00000515442	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RUFY3	HGNC	ENSG00000018189	20	0	0	12	10	45.45	-	-	-	G	71668838	A	G	71668838	1	3	242	0	1	0	0	0	0	0	0	0	13826	116	4	5		5	RUFY3	4	71668838	RNA	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09		71668838	119485438	23	23402										
DSPP	0	genome.wustl.edu	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	4	88537027	88537027	C	A	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.3213	p.D1071E	0.431	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	69	0	0	57	7	10.94	-	-	-	A	88537027	C	A	88537027	3	1	242	1	0	0	0	0	1	0	0	0	4817	477	17	4	3227	4	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	16868189	88537027	102617249	24	23403										
PRDM9	0	genome.wustl.edu	37	chr5	23527481	23527481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggctttcgcgataagtcaCacctcctcagacaccagagg	11	13	2	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	5	23527481	23527481	C	G	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.2284	p.H762D	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	22	0	0	36	11	23.4	-	-	-	G	23527481	C	G	23527481	3	3	242	1	0	0	0	0	1	0	0	0	12544	478	17	4	2322	4	PRDM9	5	23527481	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		23527481	157387779	25	23404										
IL17B	0	genome.wustl.edu	37	chr5	148754154	148754154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acggggatacggctggggtcGtggttgatgctgcagggagc	20	7	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	5	148754154	148754154	G	A	SNP	IL17B	ENST00000261796	human	ensembl	69_37n	-1	known	silent	c.321	p.H107	0.965	pfam_Interleukin-17,prints_Interleukin-17_chordata	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17B	HGNC	ENSG00000127743	19	0	0	2	12	85.71	-	-	-	A	148754154	G	A	148754154	2	1	242	1	0	0	0	0	0	0	0	1	7689	1136	40	1		1	IL17B	5	148754154	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	125226673	148754154	32161106	26	23405										
SYNPO	0	genome.wustl.edu	37	chr5	150028533	150028533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacttcacactggccaagccCccatcagtggtcaacaggac	8	16	3	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	5	150028533	150028533	C	T	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	silent	c.1428	p.P476	0.008	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	28	0	0	16	3	15.79	-	-	-	T	150028533	C	T	150028533	2	4	242	1	0	0	0	0	0	0	0	1	15548	610	22	4		4	SYNPO	5	150028533	Silent	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	1274379	150028533	30886727	27	23406										
TRAM2	0	genome.wustl.edu	37	chr6	52369477	52369477	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcattccagtattcccgccaGtgccgcagctgggagtggat	12	12	1	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	6	52369477	52369477	G	C	SNP	TRAM2	ENST00000182527	human	ensembl	69_37n	-1	known	missense	c.951	p.H317Q	1.000	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308	50	0	0	82	28	25.45	-	-	-	C	52369477	G	C	52369477	3	2	242	1	0	0	0	0	1	0	0	0	16549	1020	36	4	169	4	TRAM2	6	52369477	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		52369477	118745590	28	23407										
PHF3	0	genome.wustl.edu	37	chr6	64395494	64395494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acatgtatcacattctagccAgaaacagtgtcataagcctc	6	11	3	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	6	64395494	64395494	A	G	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.1871	p.Q624R	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	22	0	0	9	10	52.63	-	-	-	G	64395494	A	G	64395494	3	3	242	1	0	0	0	0	1	0	0	0	11910	188	7	5	1881	5	PHF3	6	64395494	Missense_Mutation	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09	12026017	64395494	106719573	29	23408										
TMEM184A	0	genome.wustl.edu	37	chr7	1589818	1589818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccccggaggcagcaggtgcCgtacaagcagctggacctgc	15	14	0	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	1589818	1589818	C	T	SNP	TMEM184A	ENST00000297477	human	ensembl	69_37n	-1	known	missense	c.493	p.G165S	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855	21	0	0	18	10	35.71	-	-	-	T	1589818	C	T	1589818	3	4	242	1	0	0	0	0	1	0	0	0	16199	652	23	1	768	1	TMEM184A	7	1589818	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		1589818	157548845	30	23409										
ACTB	0	genome.wustl.edu	37	chr7	5567149	5567149	+	RNA	DEL	A	A	-													0	0	1	0	0	0	1	1	0	atgactattaaaaaaacaacAatgtgcaatcaaagtcctcg							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	5567149	5567149	A	-	DEL	ACTB	ENST00000464611	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ACTB	HGNC	ENSG00000075624	32	0	0	24	39	58.21	-	-	-	-	5567149	A	-	5567149	6	5	242	0	1	1	0	1	0	0	0	0	193	145	5	0		0	ACTB	7	5567149	RNA	DEL	A	TCGA-AC-A2BK-01A-11D-A21Q-09	3977331	5567149	153571514	31	23410										
TBX20	0	genome.wustl.edu	37	chr7	35280490	35280490	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aattgtgaactgtacactcaCcagttgattctggtaggcag	10	8	2	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	35280490	35280490	C	A	SNP	TBX20	ENST00000408931	human	ensembl	69_37n	-1	known	splice_site	c.813+1	e5+1	1.000	-	-	-	no_errors	TBX20	HGNC	ENSG00000164532	55	0	0	38	32	45.71	-	-	-	A	35280490	C	A	35280490	5	1	242	1	0	0	0	0	0	0	1	0	15751	521	18	4	546	4	TBX20	7	35280490	Splice_Site	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	29713341	35280490	123858173	32	23411										
DLX6	0	genome.wustl.edu	37	chr7	96635420	96635421	+	In_Frame_Ins	INS	-	-	GCC													0	0	1	0	0	0	1	1	0	cagcagcagcaacagcaacaINSgccgccgccgccgccgccgc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	96635420	96635421	-	GCC	INS	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	in_frame_ins	c.131_132	p.48in_frame_insP	0.990:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	33	0	0	41	7	14.58	-	-	-	GCC	96635421	-	GCC	96635420	7	5	242	1	0	1	1	0	0	0	0	0	4611	188	7	0	133	0	DLX6	7	96635420	In_Frame_Ins	INS	-	TCGA-AC-A2BK-01A-11D-A21Q-09	61354930	96635420	62503243	33	23412										
HBP1	0	genome.wustl.edu	37	chr7	106830713	106830713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatgtctacctcctggacacCccgatgccattaattttgat	6	12	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	106830713	106830713	C	A	SNP	HBP1	ENST00000222574	human	ensembl	69_37n	1	known	missense	c.1018	p.P340T	1.000	superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_HMG_superfamily,superfamily_Ataxin-1_HBP1,superfamily_HMG_superfamily,smart_Ataxin_AXH_dom,smart_HMG_superfamily,pfscan_Ataxin-1_HBP1,pfscan_HMG_superfamily	-	no_errors	HBP1	HGNC	ENSG00000105856	91	0	0	98	24	19.67	-	-	-	A	106830713	C	A	106830713	3	1	242	1	0	0	0	0	1	0	0	0	7036	623	22	4	1044	4	HBP1	7	106830713	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	10195293	106830713	52307950	34	23413										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138437430	138437430	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccaccgggaaccagatctcGgcgatgacacactgctgggt	13	13	1	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	7	138437430	138437430	G	C	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	silent	c.969	p.A323	0.097	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	65	0	0	43	9	17.31	-	-	-	C	138437430	G	C	138437430	2	2	242	1	0	0	0	0	0	0	0	1	1174	1103	39	3		3	ATP6V0A4	7	138437430	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	31606717	138437430	20701233	35	23414										
ESRP1	0	genome.wustl.edu	37	chr8	95718295	95718295	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgtgccttatcttttggtGgagtgaaaaaatttgagcta	10	6	1	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	8	95718295	95718295	G	T	SNP	ESRP1	ENST00000523347	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESRP1	HGNC	ENSG00000104413	18	0	0	38	18	31.58	-	-	-	T	95718295	G	T	95718295	1	4	242	0	1	0	0	0	0	0	0	0	5295	1363	47	4		4	ESRP1	8	95718295	RNA	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		95718295	50645727	36	23415										
FAM135B	0	genome.wustl.edu	37	chr8	139323125	139323125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cactcagtctgtgggggatcCttgaagacaccttcaaggtc	11	11	3	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	8	139323125	139323125	C	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.116	p.R39M	0.999	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	24	0	0	26	5	16.13	-	-	-	A	139323125	C	A	139323125	3	1	242	1	0	0	0	0	1	0	0	0	5489	681	24	4	4176	4	FAM135B	8	139323125	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	43604830	139323125	7040897	37	23416										
DOCK8	0	genome.wustl.edu	37	chr9	377122	377122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catctgcctgaactcctcccGcctggagccgctcgtgctct	9	18	2	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	9	377122	377122	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.2351	p.R784H	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	27	0	0	31	11	26.19	-	-	-	A	377122	G	A	377122	3	1	242	1	0	0	0	0	1	0	0	0	4728	1087	38	1	2429	1	DOCK8	9	377122	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		377122	140836309	38	23417										
DMRT3	0	genome.wustl.edu	37	chr9	990339	990339	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgaaagccaacagaccgccGcttgaagtgttaaaaaagat	9	8	0	4			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	9	990339	990339	G	A	SNP	DMRT3	ENST00000190165	human	ensembl	69_37n	1	known	silent	c.753	p.P251	0.077	pfam_DMA,superfamily_UBA-like	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218	32	0	0	72	18	20	-	-	-	A	990339	G	A	990339	2	1	242	1	0	0	0	0	0	0	0	1	4623	1074	38	1		1	DMRT3	9	990339	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	613217	990339	140223092	39	23418										
SUSD1	0	genome.wustl.edu	37	chr9	114865431	114865431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttatatgtgtatttctcccGtgggagtttctgctacctaa	8	8	2	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	9	114865431	114865431	G	A	SNP	SUSD1	ENST00000415074	human	ensembl	69_37n	-1	novel	missense	c.629	p.T210M	0.008	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SUSD1	HGNC	ENSG00000106868	11	0	0	29	18	38.3	-	-	-	A	114865431	G	A	114865431	3	1	242	1	0	0	0	0	1	0	0	0	15498	1160	40	1		1	SUSD1	9	114865431	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	113875092	114865431	26348000	40	23419										
SLC46A2	0	genome.wustl.edu	37	chr9	115641997	115641997	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccttcttttgtcttctgggGgcctggccatggctgatgtt	12	11	3	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	9	115641997	115641997	G	A	SNP	SLC46A2	ENST00000491462	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A2	HGNC	ENSG00000119457	62	0	0	35	21	37.5	-	-	-	A	115641997	G	A	115641997	1	1	242	0	1	0	0	0	0	0	0	0	14734	1247	43	4		4	SLC46A2	9	115641997	RNA	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	776566	115641997	25571434	41	23420										
LARP4B	0	genome.wustl.edu	37	chr10	860733	860733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacgcggtcgcagtgagggcGgaaggaagtctgtccacact	15	11	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	10	860733	860733	G	A	SNP	LARP4B	ENST00000448368	human	ensembl	69_37n	-1	known	missense	c.574	p.R192C	0.030	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LARP4B	HGNC	ENSG00000107929	16	0	0	11	12	52.17	-	-	-	A	860733	G	A	860733	3	1	242	1	0	0	0	0	1	0	0	0	8685	1103	39	1	346	1	LARP4B	10	860733	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		860733	134674014	42	23421										
BLOC1S2	0	genome.wustl.edu	37	chr10	102045902	102045902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cattttggagaacatgtcccGgcagagctcagtgatgtcag	12	9	2	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	10	102045902	102045902	G	A	SNP	BLOC1S2	ENST00000370372	human	ensembl	69_37n	-1	known	missense	c.124	p.R42W	1.000	pfam_BLOC1_su2	pfam_BLOC1_su2	-	no_errors	BLOC1S2	HGNC	ENSG00000196072	56	0	0	40	30	42.25	-	-	-	A	102045902	G	A	102045902	3	1	242	1	0	0	0	0	1	0	0	0	1454	1115	39	1	320	1	BLOC1S2	10	102045902	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	101185169	102045902	33488845	43	23422										
MKI67	0	genome.wustl.edu	37	chr10	129899951	129899951	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcttattttggcgtctggaGcgcagggatattccctaaag	12	8	2	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	10	129899951	129899951	G	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	silent	c.9276	p.R3092	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	19	0	0	22	12	35.29	-	-	-	A	129899951	G	A	129899951	2	1	242	1	0	0	0	0	0	0	0	1	9669	958	34	4		4	MKI67	10	129899951	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	27854049	129899951	5634796	44	23423										
TSPAN32	0	genome.wustl.edu	37	chr11	2337500	2337500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcttcctgaggacacaccaGcaggtcgcctccagcctgac	10	16	0	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	2337500	2337500	G	A	SNP	TSPAN32	ENST00000182290	human	ensembl	69_37n	1	known	silent	c.585	p.Q195	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	-	no_errors	TSPAN32	HGNC	ENSG00000064201	99	1	1	29	14	32.56	-	-	-	A	2337500	G	A	2337500	2	1	242	1	0	0	0	0	0	0	0	1	16743	962	34	4		4	TSPAN32	11	2337500	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		2337500	132669016	45	23424										
OR52J3	0	genome.wustl.edu	37	chr11	5068440	5068440	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctccgtgctgtcttccgcCtcccatcacatgatgctcag	7	16	4	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	5068440	5068440	C	G	SNP	OR52J3	ENST00000380370	human	ensembl	69_37n	1	known	missense	c.685	p.L229V	0.614	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52J3	HGNC	ENSG00000205495	175	0	0	10	47	82.46	-	-	-	G	5068440	C	G	5068440	3	3	242	1	0	0	0	0	1	0	0	0	11195	681	24	4	687	4	OR52J3	11	5068440	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	2730940	5068440	129938076	46	23425										
MYBPC3	0	genome.wustl.edu	37	chr11	47361303	47361303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tacaaccacaatggtgtctgGtatgcggcctgggcagtcca	12	11	1	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	47361303	47361303	G	T	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	missense	c.1966	p.P656T	0.798	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	46	0	0	86	20	18.87	-	-	-	T	47361303	G	T	47361303	3	4	242	1	0	0	0	0	1	0	0	0	10085	1261	44	4	1914	4	MYBPC3	11	47361303	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	42292863	47361303	87645213	47	23426										
NPAS4	0	genome.wustl.edu	37	chr11	66192195	66192195	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	tgcccgaaggcctgctcacaCctgaggcctctccagtcaag							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	66192195	66192195	C	-	DEL	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	frame_shift_del	c.1834	p.P612fs	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	24	0	0	3	27	90	-	-	-	-	66192195	C	-	66192195	7	5	242	1	0	1	0	1	0	0	0	0	10637	507	18	0	1860	0	NPAS4	11	66192195	Frame_Shift_Del	DEL	C	TCGA-AC-A2BK-01A-11D-A21Q-09	18830892	66192195	68814321	48	23427										
MYEOV	0	genome.wustl.edu	37	chr11	69063371	69063371	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggcactgggaacaggaatTctgggagtcagtctgcaagg	16	7	3	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	69063371	69063371	T	A	SNP	MYEOV	ENST00000308946	human	ensembl	69_37n	1	known	missense	c.454	p.S152T	0.001	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927	50	0	0	13	52	80	-	-	-	A	69063371	T	A	69063371	3	1	242	1	0	0	0	0	1	0	0	0	10097	1783	62	5	460	5	MYEOV	11	69063371	Missense_Mutation	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	2871176	69063371	65943145	49	23428										
CCDC15	0	genome.wustl.edu	37	chr11	124857093	124857093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagcagttacattttgaggGccttcaggatattctgccag	10	8	2	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	11	124857093	124857093	G	T	SNP	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	missense	c.971	p.G324V	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	23	0	0	26	4	13.33	-	-	-	T	124857093	G	T	124857093	3	4	242	1	0	0	0	0	1	0	0	0	2809	1203	42	4	997	4	CCDC15	11	124857093	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	55793722	124857093	10149423	50	23429										
ITFG2	0	genome.wustl.edu	37	chr12	2932053	2932053	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgtccgcttccaagtggatGaaaatatccgtgccttctgt	9	11	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	12	2932053	2932053	G	T	SNP	ITFG2	ENST00000228799	human	ensembl	69_37n	1	known	nonsense	c.1042	p.E348*	1.000	superfamily_WD40_repeat_dom	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203	53	0	0	44	15	25.42	-	-	-	T	2932053	G	T	2932053	4	4	242	1	0	0	0	0	0	1	0	0	7924	1291	45	2	1080	2	ITFG2	12	2932053	Nonsense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		2932053	130919842	51	23430										
TAS2R43	0	genome.wustl.edu	37	chr12	11244634	11244634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcaacacagttgaataccaGtttaataataatacccagag	5	8	1	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	12	11244634	11244634	G	A	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	silent	c.195	p.N65	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	22	0	0	2	14	87.5	-	-	-	A	11244634	G	A	11244634	2	1	242	1	0	0	0	0	0	0	0	1	15673	1020	36	4		4	TAS2R43	12	11244634	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	8312581	11244634	122607261	52	23431			1	47		2	2	13	N	T_G	3.023529e-05
TAS2R43	0	genome.wustl.edu	37	chr12	11244646	11244646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaataccagtttaataataaTacccagagcaaaccaactct	4	10	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	12	11244646	11244646	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	silent	c.183	p.V61	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	22	0	0	3	14	82.35	-	-	-	C	11244646	T	C	11244646	2	2	242	1	0	0	0	0	0	0	0	1	15673	1393	49	5		5	TAS2R43	12	11244646	Silent	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	12	11244646	122607249	53	23432			1	47		2	2	13	N	T_G	3.023529e-05
MLL2	0	genome.wustl.edu	37	chr12	49425787	49425788	+	Frame_Shift_Del	DEL	CT	CT	-													0	0	1	0	0	0	1	1	0	gggtctggcgtactgcctgaCtctgctgcagctgccgctgc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	12	49425787	49425788	CT	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	frame_shift_del	c.12701_12700	p.Q4235fs	1.000:0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	36	0	0	18	58	75.32	-	-	-	-	49425788	CT	-	49425787	7	5	242	1	0	1	0	1	0	0	0	0	9692	565	20	0	3976	0	MLL2	12	49425787	Frame_Shift_Del	DEL	CT	TCGA-AC-A2BK-01A-11D-A21Q-09	38181141	49425787	84426108	54	23433										
STAT6	0	genome.wustl.edu	37	chr12	57498293	57498293	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggccaagtgtgaagctggcaGagaagagcacagcgcacttc	14	10	0	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	12	57498293	57498293	G	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.1166	p.S389Y	0.007	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	41	0	0	32	4	11.11	-	-	-	T	57498293	G	T	57498293	3	4	242	1	0	0	0	0	1	0	0	0	15361	942	33	2	1425	2	STAT6	12	57498293	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	8072506	57498293	76353602	55	23434										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20220772	20220772	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaagtccaaaccagacctgGagagctccttggaaagttta	9	10	0	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	13	20220772	20220772	G	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	nonsense	c.559	p.E187*	0.975	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	39	0	0	32	4	11.11	-	-	-	T	20220772	G	T	20220772	4	4	242	1	0	0	0	0	0	1	0	0	9799	1175	41	2	569	2	MPHOSPH8	13	20220772	Nonsense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		20220772	94949106	56	23435										
FREM2	0	genome.wustl.edu	37	chr13	39343763	39343763	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaagacaaagacttcaaggGcaaagcacagaaacaagtgc	9	8	1	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	13	39343763	39343763	G	C	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.5459	p.G1820A	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	35	0	0	4	16	80	-	-	-	C	39343763	G	C	39343763	3	2	242	1	0	0	0	0	1	0	0	0	6094	1203	42	4	5473	4	FREM2	13	39343763	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	19122991	39343763	75826115	57	23436										
SYNE2	0	genome.wustl.edu	37	chr14	64675643	64675643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggaggaacatttgtgccatGtccatggagcggcgcatgaa	14	8	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	14	64675643	64675643	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.18369	p.M6123I	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	63	0	0	19	23	54.76	-	-	-	A	64675643	G	A	64675643	3	1	242	1	0	0	0	0	1	0	0	0	15538	1377	48	4	18767	4	SYNE2	14	64675643	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		64675643	42673897	58	23437										
FOS	0	genome.wustl.edu	37	chr14	75746765	75746765	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctggggcttactccagggcTggcgttgtgaagaccatgac	15	10	0	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	14	75746765	75746765	T	G	SNP	FOS	ENST00000554212	human	ensembl	69_37n	1	novel	missense	c.298	p.W100G	0.096	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	FOS	HGNC	ENSG00000170345	49	0	0	17	26	60.47	-	-	-	G	75746765	T	G	75746765	3	3	242	1	0	0	0	0	1	0	0	0	6031	1567	55	5	333	5	FOS	14	75746765	Missense_Mutation	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	11071122	75746765	31602775	59	23438										
DYNC1H1	0	genome.wustl.edu	37	chr14	102502958	102502958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttagagagtgcactgagattCggtaacccccttctggtcca	10	11	1	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	14	102502958	102502958	C	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.10887	p.F3629L	0.154	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	57	0	0	44	15	25.42	-	-	-	A	102502958	C	A	102502958	3	1	242	1	0	0	0	0	1	0	0	0	4876	883	31	3	11113	3	DYNC1H1	14	102502958	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	26756193	102502958	4846582	60	23439										
RNF111	0	genome.wustl.edu	37	chr15	59347900	59347900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtctcgttcaacccttggaCactccagatctcattggagc	9	13	3	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	15	59347900	59347900	C	T	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.1027	p.H343Y	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	59	0	0	9	26	72.22	-	-	-	T	59347900	C	T	59347900	3	4	242	1	0	0	0	0	1	0	0	0	13511	478	17	4	1037	4	RNF111	15	59347900	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		59347900	43183492	61	23440										
ALOX12	0	genome.wustl.edu	37	chr17	6913322	6913322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctccatgcacaatgcggatGcccccacccaccaccaagga	8	18	0	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	17	6913322	6913322	G	A	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.1689	p.M563I	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	26	0	0	14	5	25	-	-	-	A	6913322	G	A	6913322	3	1	242	1	0	0	0	0	1	0	0	0	536	1319	46	4	1739	4	ALOX12	17	6913322	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09		6913322	74281888	62	23441										
KRT38	0	genome.wustl.edu	37	chr17	39596721	39596721	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atggtgtggaagtaagactgGtagtcggggcacacggtgga	18	5	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	17	39596721	39596721	G	C	SNP	KRT38	ENST00000246646	human	ensembl	69_37n	-1	known	nonsense	c.453	p.Y151*	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT38	HGNC	ENSG00000171360	89	0	0	45	19	29.69	-	-	-	C	39596721	G	C	39596721	4	2	242	1	0	0	0	0	0	1	0	0	8528	1256	44	4	945	4	KRT38	17	39596721	Nonsense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	32683399	39596721	41598489	63	23442										
SLC16A5	0	genome.wustl.edu	37	chr17	73089910	73089910	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	ttggttcccctccatcctcaCggctgtgctccacatggcag							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	17	73089910	73089910	C	-	DEL	SLC16A5	ENST00000329783	human	ensembl	69_37n	1	known	frame_shift_del	c.179	p.T60fs	0.001	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	44	0	0	54	18	24.66	-	-	-	-	73089910	C	-	73089910	7	5	242	1	0	1	0	1	0	0	0	0	14500	536	19	0	181	0	SLC16A5	17	73089910	Frame_Shift_Del	DEL	C	TCGA-AC-A2BK-01A-11D-A21Q-09	33493189	73089910	8105300	64	23443										
ACTG1	0	genome.wustl.edu	37	chr17	79479298	79479298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgatggaaggaaacacggctCggggagcgtcgtccccagca	15	12	0	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	17	79479298	79479298	C	A	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.83	p.R28L	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	49	0	0	67	22	24.72	-	-	-	A	79479298	C	A	79479298	3	1	242	1	0	0	0	0	1	0	0	0	196	884	31	3	1064	3	ACTG1	17	79479298	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	6389388	79479298	1715912	65	23444										
ZNF407	0	genome.wustl.edu	37	chr18	72775958	72775958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtgtgtgacacggccgcggCcggccagttggtcaaggacg	17	11	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	18	72775958	72775958	C	T	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.6281	p.A2094V	0.957	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	70	0	0	45	12	21.05	-	-	-	T	72775958	C	T	72775958	3	4	242	1	0	0	0	0	1	0	0	0	17983	739	26	4	6441	4	ZNF407	18	72775958	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		72775958	5301290	66	23445										
ADNP2	0	genome.wustl.edu	37	chr18	77896057	77896057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgcatccactgctgtgggGtctacacgggaaatatgacc	12	10	1	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	18	77896057	77896057	G	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	missense	c.2761	p.V921F	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	29	0	0	18	9	33.33	-	-	-	T	77896057	G	T	77896057	3	4	242	1	0	0	0	0	1	0	0	0	324	1261	44	4	2771	4	ADNP2	18	77896057	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	5120099	77896057	181191	67	23446										
TNFSF14	0	genome.wustl.edu	37	chr19	6665222	6665222	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccacaccgcccagctgcacCttggagtagatgtagtagta	10	13	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	6665222	6665222	C	G	SNP	TNFSF14	ENST00000245912	human	ensembl	69_37n	-1	known	missense	c.438	p.K146N	0.998	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	-	no_errors	TNFSF14	HGNC	ENSG00000125735	35	0	0	42	11	20.75	-	-	-	G	6665222	C	G	6665222	3	3	242	1	0	0	0	0	1	0	0	0	16402	680	24	4	288	4	TNFSF14	19	6665222	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		6665222	52463761	68	23447										
CNN1	0	genome.wustl.edu	37	chr19	11658612	11658612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctttccctgccccacctagGcgaagacgaaaggaaacaag	10	13	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	11658612	11658612	G	T	SNP	CNN1	ENST00000252456	human	ensembl	69_37n	1	known	missense	c.391	p.A131S	1.000	superfamily_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176	37	0	0	74	20	21.28	-	-	-	T	11658612	G	T	11658612	3	4	242	1	0	0	0	0	1	0	0	0	3639	1217	42	4	409	4	CNN1	19	11658612	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	4993390	11658612	47470371	69	23448										
FXYD3	0	genome.wustl.edu	37	chr19	35613692	35613692	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcacagcctccaggttggcGggctcatctgcgctggggtt	16	12	2	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	35613692	35613692	G	C	SNP	FXYD3	ENST00000435734	human	ensembl	69_37n	1	known	missense	c.292	p.G98R	0.949	pfam_Ion-transport_regulator_FXYD	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD3	HGNC	ENSG00000089356	38	0	0	30	14	31.11	-	-	-	C	35613692	G	C	35613692	3	2	242	1	0	0	0	0	1	0	0	0	6168	1116	39	3	403	3	FXYD3	19	35613692	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	23955080	35613692	23515291	70	23449										
ATP4A	0	genome.wustl.edu	37	chr19	36051279	36051279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagaccctcaaggcacatgGtggagaagaaggcgatgttg	14	8	1	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	36051279	36051279	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.773	p.T258I	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	52	0	0	65	21	24.42	-	-	-	A	36051279	G	A	36051279	3	1	242	1	0	0	0	0	1	0	0	0	1149	1261	44	4	2402	4	ATP4A	19	36051279	Missense_Mutation	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	437587	36051279	23077704	71	23450										
ZFP30	0	genome.wustl.edu	37	chr19	38125951	38125951	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctaaatgcctttttacattcCttacatttgtatggtttctc	4	9	1	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	38125951	38125951	C	G	SNP	ZFP30	ENST00000351218	human	ensembl	69_37n	-1	known	missense	c.1491	p.K497N	0.262	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	22	0	0	61	21	25.61	-	-	-	G	38125951	C	G	38125951	3	3	242	1	0	0	0	0	1	0	0	0	17740	680	24	4	72	4	ZFP30	19	38125951	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	2074672	38125951	21003032	72	23451										
FCGBP	0	genome.wustl.edu	37	chr19	40377034	40377034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	20	0	0	115	24	17.27	-	-	-	A	40377034	G	A	40377034	2	1	242	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40377034	Silent	SNP	G	TCGA-AC-A2BK-01A-11D-A21Q-09	2251083	40377034	18751949	73	23452										
ZNF526	0	genome.wustl.edu	37	chr19	42730398	42730398	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccatctcctgccccacccCcacctccagagcctcaacag	4	23	2	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	19	42730398	42730398	C	G	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	missense	c.1843	p.P615A	0.153	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	51	0	0	49	19	27.94	-	-	-	G	42730398	C	G	42730398	3	3	242	1	0	0	0	0	1	0	0	0	18063	623	22	4	1845	4	ZNF526	19	42730398	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09	2353364	42730398	16398585	74	23453										
CTNNBL1	0	genome.wustl.edu	37	chr20	36361305	36361305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ataggggcacaaaacgtcccCgggatgatgaagaggaggag	16	7	0	3			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	20	36361305	36361305	C	T	SNP	CTNNBL1	ENST00000361383	human	ensembl	69_37n	1	putative	missense	c.55	p.R19W	1.000	NULL	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	37	0	0	35	7	16.67	-	-	-	T	36361305	C	T	36361305	3	4	242	1	0	0	0	0	1	0	0	0	4050	643	23	1	61	1	CTNNBL1	20	36361305	Missense_Mutation	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		36361305	26664215	75	23454										
KRTAP10-2	0	genome.wustl.edu	37	chr21	45970945	45970945	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggactgctggcaggaggaagAggcacagcaagctggctggc	18	9	0	1			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	21	45970945	45970945	A	T	SNP	KRTAP10-2	ENST00000391621	human	ensembl	69_37n	-1	known	missense	c.397	p.S133T	0.000	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445	129	1	0.77	71	62	46.62	-	-	-	T	45970945	A	T	45970945	3	4	242	1	0	0	0	0	1	0	0	0	8562	304	11	5	374	5	KRTAP10-2	21	45970945	Missense_Mutation	SNP	A	TCGA-AC-A2BK-01A-11D-A21Q-09		45970945	2158950	76	23455										
ZDHHC8	0	genome.wustl.edu	37	chr22	20130398	20130398	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ggcctgcatgcagcctacccGccatccccaccgctcagcgc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	22	20130398	20130398	G	-	DEL	ZDHHC8	ENST00000405930	human	ensembl	69_37n	1	known	frame_shift_del	c.1245	p.P416fs	0.996	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904	16	0	0	9	2	18.18	-	-	-	-	20130398	G	-	20130398	7	5	242	1	0	1	0	1	0	0	0	0	17717	1074	38	0	1283	0	ZDHHC8	22	20130398	Frame_Shift_Del	DEL	G	TCGA-AC-A2BK-01A-11D-A21Q-09		20130398	31174168	77	23456										
MLC1	0	genome.wustl.edu	37	chr22	50518441	50518441	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaacaaacaatatctgaaagTtgggaatctgaaaaacaagg	8	5	2	2			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	22	50518441	50518441	T	C	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	missense	c.329	p.N110S	1.000	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	32	0	0	46	21	31.34	-	-	-	C	50518441	T	C	50518441	3	2	242	1	0	0	0	0	1	0	0	0	9683	1725	60	5	836	5	MLC1	22	50518441	Missense_Mutation	SNP	T	TCGA-AC-A2BK-01A-11D-A21Q-09	30388043	50518441	786125	78	23457										
OTC	0	genome.wustl.edu	37	chrX	38268240	38268240	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagaagaggagaagaaaaagCggctccaggctttccaaggt	13	7	0	4			TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	X	38268240	38268240	C	A	SNP	OTC	ENST00000039007	human	ensembl	69_37n	1	known	silent	c.829	p.R277	1.000	pfam_Asp_carbamoyltransf_Asp/Orn-bd,superfamily_Asp/Orn_carbamoylTrfase,tigrfam_Orn/put_carbamltrans	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473	44	0	0	2	16	88.89	-	-	-	A	38268240	C	A	38268240	2	1	242	1	0	0	0	0	0	0	0	1	11374	759	27	3		3	OTC	23	38268240	Silent	SNP	C	TCGA-AC-A2BK-01A-11D-A21Q-09		38268240	117002320	79	23458										
ZIC3	0	genome.wustl.edu	37	chrX	136648985	136648987	+	In_Frame_Del	DEL	CGC	CGC	-													0	0	1	0	0	0	1	1	0	cccttcggggactcaacccaCgccgccgccgccgccgccgc							TCGA-AC-A2BK-01A-11D-A21Q-09	TCGA-AC-A2BK-11A-13D-A21Q-09	CGC	CGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfa13c0e-cc3d-4a4d-9307-75571f89c37f	8f640fe4-aa25-444a-95b1-ca7a17baeb52	X	136648985	136648987	CGC	-	DEL	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	in_frame_del	c.135_137	p.A49in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	28	0	0	10	2	16.67	-	-	-	-	136648987	CGC	-	136648985	7	5	242	1	0	1	0	1	0	0	0	0	17776	535	19	0	137	0	ZIC3	23	136648985	In_Frame_Del	DEL	CGC	TCGA-AC-A2BK-01A-11D-A21Q-09	98380745	136648985	18621575	80	23459										
AGL	0	genome.wustl.edu	37	chr1	100381025	100381025	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttgcttggtccccttggcatGaaaactttagatccagagta	9	9	0	3			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	1	100381025	100381025	G	T	SNP	AGL	ENST00000294724	human	ensembl	69_37n	1	known	missense	c.4242	p.M1414I	1.000	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	33	0	0	26	4	13.33	-	-	-	T	100381025	G	T	100381025	3	4	243	1	0	0	0	0	1	0	0	0	384	1290	45	2	4429	2	AGL	1	100381025	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		100381025	148869596	1	23460										
ATXN7L2	0	genome.wustl.edu	37	chr1	110032625	110032625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atggggacccaggcctgttcCccttccccatgccccggggt	12	17	0	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	1	110032625	110032625	C	A	SNP	ATXN7L2	ENST00000369870	human	ensembl	69_37n	1	known	missense	c.1111	p.P371T	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	35	0	0	38	6	13.64	-	-	-	A	110032625	C	A	110032625	3	1	243	1	0	0	0	0	1	0	0	0	1221	623	22	4	1141	4	ATXN7L2	1	110032625	Missense_Mutation	SNP	C	TCGA-AC-A2BM-01A-11D-A21Q-09	9651600	110032625	139217996	2	23461										
CD247	0	genome.wustl.edu	37	chr1	167404418	167404418	+	RNA	DEL	T	T	-													0	0	1	0	NA	0	1	1	0	tccagcccttcctccagcccTtcctccggagccctcctcca							TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	1	167404418	167404418	T	-	DEL	CD247	ENST00000483825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	CD247	HGNC	ENSG00000198821	8	0	0	23	9	27.27	-	-	-	-	167404418	T	-	167404418	6	5	243	0	1	1	0	1	0	0	0	0	3017	1624	56	0		0	CD247	1	167404418	RNA	DEL	T	TCGA-AC-A2BM-01A-11D-A21Q-09	57371793	167404418	81846203	3	23462										
ASTN1	0	genome.wustl.edu	37	chr1	176863705	176863705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccaggcctcttaccctctggGtctggttgttggtcactagt	11	12	4	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	1	176863705	176863705	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2957	p.T986N	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	24	0	0	30	9	23.08	-	-	-	T	176863705	G	T	176863705	3	4	243	1	0	0	0	0	1	0	0	0	1068	1261	44	4	983	4	ASTN1	1	176863705	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	9459287	176863705	72386916	4	23463										
CAPN2	0	genome.wustl.edu	37	chr1	223936765	223936765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccagcgccgcggactcggagGccatcacgtttcagaagctg	13	14	2	1			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	1	223936765	223936765	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.754	p.A252T	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	46	0	0	55	28	33.73	-	-	-	A	223936765	G	A	223936765	3	1	243	1	0	0	0	0	1	0	0	0	2652	1203	42	4	783	4	CAPN2	1	223936765	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	47073060	223936765	25313856	5	23464										
ADCY5	0	genome.wustl.edu	37	chr3	123033083	123033083	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agctgtcagctacactcaccTttacgcaggagtagatcaca	8	12	3	1			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	3	123033083	123033083	T	G	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.2441	p.K814T	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	42	0	0	29	15	34.09	-	-	-	G	123033083	T	G	123033083	3	3	243	1	0	0	0	0	1	0	0	0	297	1623	56	5	1384	5	ADCY5	3	123033083	Missense_Mutation	SNP	T	TCGA-AC-A2BM-01A-11D-A21Q-09		123033083	74989347	6	23465										
MUC4	0	genome.wustl.edu	37	chr3	195507480	195507480	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggggtggcgtgacctgtggaTactgaggaagcgtcggtgac	19	7	0	3			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	3	195507480	195507480	T	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.10971	p.V3657	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	46	0	0	79	12	13.19	-	-	-	C	195507480	T	C	195507480	2	2	243	1	0	0	0	0	0	0	0	1	10050	1393	49	5		5	MUC4	3	195507480	Silent	SNP	T	TCGA-AC-A2BM-01A-11D-A21Q-09	72474397	195507480	2514950	7	23466										
NUP153	0	genome.wustl.edu	37	chr6	17637763	17637763	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttatttggtgtttcaattccAgtctgtttagcagtatctct	7	7	3	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	6	17637763	17637763	A	T	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	silent	c.2178	p.T726	0.192	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	45	0	0	32	10	23.81	-	-	-	T	17637763	A	T	17637763	2	4	243	1	0	0	0	0	0	0	0	1	10828	175	7	5		5	NUP153	6	17637763	Silent	SNP	A	TCGA-AC-A2BM-01A-11D-A21Q-09		17637763	153477304	8	23467										
EHMT2	0	genome.wustl.edu	37	chr6	31860684	31860684	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gggccgcttctcagggaccgGgggctgtgggccgagaggga	21	10	1	1			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	6	31860684	31860684	G	T	SNP	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	missense	c.757	p.P253T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	26	0	0	19	4	17.39	-	-	-	T	31860684	G	T	31860684	3	4	243	1	0	0	0	0	1	0	0	0	5019	1232	43	4	3142	4	EHMT2	6	31860684	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	14222921	31860684	139254383	9	23468										
SFT2D1	0	genome.wustl.edu	37	chr6	166737971	166737971	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcacaggtcccaaacaaaatGctcgtcacgtctcaggcaat	7	13	3	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	6	166737971	166737971	G	T	SNP	SFT2D1	ENST00000479490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SFT2D1	HGNC	ENSG00000198818	30	0	0	9	3	25	-	-	-	T	166737971	G	T	166737971	1	4	243	0	1	0	0	0	0	0	0	0	14273	1334	46	4		4	SFT2D1	6	166737971	RNA	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	134877287	166737971	4377096	10	23469										
FRMD1	0	genome.wustl.edu	37	chr6	168457889	168457889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgcaggggcctgccagcctgCagtccagggcgcggtggaag	18	13	0	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	6	168457889	168457889	C	T	SNP	FRMD1	ENST00000283309	human	ensembl	69_37n	-1	known	missense	c.1538	p.C513Y	0.002	NULL	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	50	0	0	34	4	10.53	-	-	-	T	168457889	C	T	168457889	3	4	243	1	0	0	0	0	1	0	0	0	6098	710	25	4	115	4	FRMD1	6	168457889	Missense_Mutation	SNP	C	TCGA-AC-A2BM-01A-11D-A21Q-09	1719918	168457889	2657178	11	23470										
NTRK2	0	genome.wustl.edu	37	chr9	87342736	87342736	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tacatgttaccaatcacacgGagtaccacggctgcctccag	8	14	1	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	9	87342736	87342736	G	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	nonsense	c.1021	p.E341*	1.000	pfam_Ig_I-set,prints_Tyr_kin_neurotrophic_rcpt_2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	45	0	0	24	11	31.43	-	-	-	T	87342736	G	T	87342736	4	4	243	1	0	0	0	0	0	1	0	0	10780	1175	41	2	1051	2	NTRK2	9	87342736	Nonsense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		87342736	53870695	12	23471										
MRPL17	0	genome.wustl.edu	37	chr11	6704479	6704479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcgggaccgaggcccatacGgcgaaatacgcggccatggg	15	13	0	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	11	6704479	6704479	G	T	SNP	MRPL17	ENST00000288937	human	ensembl	69_37n	-1	known	missense	c.49	p.R17S	0.973	tigrfam_Ribosomal_L17	pfam_Ribosomal_L17,superfamily_Ribosomal_L17,tigrfam_Ribosomal_L17	-	no_errors	MRPL17	HGNC	ENSG00000158042	70	0	0	37	5	11.9	-	-	-	T	6704479	G	T	6704479	3	4	243	1	0	0	0	0	1	0	0	0	9854	1116	39	3	490	3	MRPL17	11	6704479	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		6704479	128302037	13	23472										
GRIA4	0	genome.wustl.edu	37	chr11	105850615	105850615	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aacgcgctggccggacatcaGcagcagcaacgtgtgcatga	13	12	1	1			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	11	105850615	105850615	G	T	SNP	GRIA4	ENST00000533094	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.998	-	-	-	no_errors	GRIA4	HGNC	ENSG00000152578	25	0	0	24	4	14.29	-	-	-	T	105850615	G	T	105850615	1	4	243	0	1	0	0	0	0	0	0	0	6821	986	34	4		4	GRIA4	11	105850615	RNA	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	99146136	105850615	29155901	14	23473										
RNASEH2B	0	genome.wustl.edu	37	chr13	51519622	51519622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aatgtcagttcccgggtacaGtcaactgcatttttctctgg	9	10	3	0			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	13	51519622	51519622	G	T	SNP	RNASEH2B	ENST00000336617	human	ensembl	69_37n	1	known	missense	c.570	p.Q190H	0.960	pfam_RNase_H2_suB	pfam_RNase_H2_suB	-	no_errors	RNASEH2B	HGNC	ENSG00000136104	30	0	0	14	3	17.65	-	-	-	T	51519622	G	T	51519622	3	4	243	1	0	0	0	0	1	0	0	0	13499	1020	36	4	596	4	RNASEH2B	13	51519622	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		51519622	63650256	15	23474										
PCSK6	0	genome.wustl.edu	37	chr15	101929764	101929764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagcgctgacgcagatccgtGgtgacctgggggagagagaa	17	9	0	5			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	15	101929764	101929764	G	A	SNP	PCSK6	ENST00000559417	human	ensembl	69_37n	-1	novel	missense	c.836	p.P279L	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_start_codon:pseudogene:no_stop_codon	PCSK6	HGNC	ENSG00000140479	35	0	0	34	4	10.53	-	-	-	A	101929764	G	A	101929764	3	1	243	1	0	0	0	0	1	0	0	0	11677	1335	47	4	2229	4	PCSK6	15	101929764	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		101929764	601628	16	23475										
SERPINF1	0	genome.wustl.edu	37	chr17	1679825	1679825	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgctttctcacttgtctcaGattgcccagctgcccttgac	7	14	2	2			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	17	1679825	1679825	G	T	SNP	SERPINF1	ENST00000254722	human	ensembl	69_37n	1	known	splice_site	c.787-1	e6-1	1.000	-	-	-	no_errors	SERPINF1	HGNC	ENSG00000132386	47	0	0	21	3	12.5	-	-	-	T	1679825	G	T	1679825	5	4	243	1	0	0	0	0	0	0	1	0	14202	956	33	2	808	2	SERPINF1	17	1679825	Splice_Site	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09		1679825	79515385	17	23476										
SLC16A6	0	genome.wustl.edu	37	chr17	66270159	66270159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgacaagtagcccccccaaCatcactaccagacggtgtcc	7	17	1	2			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	17	66270159	66270159	C	T	SNP	SLC16A6	ENST00000327268	human	ensembl	69_37n	-1	known	missense	c.285	p.M95I	0.778	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	43	0	0	23	5	17.86	-	-	-	T	66270159	C	T	66270159	3	4	243	1	0	0	0	0	1	0	0	0	14501	478	17	4	1302	4	SLC16A6	17	66270159	Missense_Mutation	SNP	C	TCGA-AC-A2BM-01A-11D-A21Q-09	64590334	66270159	14925051	18	23477										
SDK2	0	genome.wustl.edu	37	chr17	71344748	71344748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ctgccctcacctgagagtcgGagatttctgagggcttctcc	11	13	3	3			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	17	71344748	71344748	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.6155	p.S2052F	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	50	0	0	32	4	11.11	-	-	-	A	71344748	G	A	71344748	3	1	243	1	0	0	0	0	1	0	0	0	14057	1174	41	2	371	2	SDK2	17	71344748	Missense_Mutation	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	5074589	71344748	9850462	19	23478										
KIAA0195	0	genome.wustl.edu	37	chr17	73491096	73491096	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccagccacgcaggctccctGcatgatgacctgaatcaggg	11	15	1	3			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	17	73491096	73491096	G	T	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	silent	c.2709	p.L903	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	26	0	0	30	4	11.76	-	-	-	T	73491096	G	T	73491096	2	4	243	1	0	0	0	0	0	0	0	1	8212	1306	46	4		4	KIAA0195	17	73491096	Silent	SNP	G	TCGA-AC-A2BM-01A-11D-A21Q-09	2146348	73491096	7704114	20	23479										
ASXL3	0	genome.wustl.edu	37	chr18	31320369	31320369	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcagcccacctgagaaagaaCagcctcccagagaggaacca	10	14	0	3			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	18	31320369	31320369	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	nonsense	c.3001	p.Q1001*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	49	0	0	28	4	12.5	-	-	-	T	31320369	C	T	31320369	4	4	243	1	0	0	0	0	0	1	0	0	1072	479	17	4	3043	4	ASXL3	18	31320369	Nonsense_Mutation	SNP	C	TCGA-AC-A2BM-01A-11D-A21Q-09		31320369	46756879	21	23480										
CCDC159	0	genome.wustl.edu	37	chr19	11465396	11465396	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagatcctccccagtcccccCctccacccatttccctcctg	3	24	0	1			TCGA-AC-A2BM-01A-11D-A21Q-09	TCGA-AC-A2BM-11A-13D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac1b3eef-a009-421f-971e-e7d88064e62b	ee2a49ba-7a24-4021-bbd5-b6b314828893	19	11465396	11465396	C	A	SNP	CCDC159	ENST00000591691	human	ensembl	69_37n	1	putative	silent	c.435	p.P145	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC159	HGNC	ENSG00000183401	39	0	0	17	6	26.09	-	-	-	A	11465396	C	A	11465396	2	1	243	1	0	0	0	0	0	0	0	1	2817	638	22	4		4	CCDC159	19	11465396	Silent	SNP	C	TCGA-AC-A2BM-01A-11D-A21Q-09		11465396	47663587	22	23481										
KIF1B	0	genome.wustl.edu	37	chr1	10363725	10363725	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ttcatatagacaagctggaaGatattttgcaagaagtcaaa	8	5	2	3			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	1	10363725	10363725	G	T	SNP	KIF1B	ENST00000377083	human	ensembl	69_37n	1	known	missense	c.2482	p.D828Y	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	32	0	0	11	3	21.43	-	-	-	T	10363725	G	T	10363725	3	4	244	1	0	0	0	0	1	0	0	0	8336	942	33	2	2560	2	KIF1B	1	10363725	Missense_Mutation	SNP	G	TCGA-AC-A2FB-01A-11D-A17D-09		10363725	238886896	1	23482										
CD247	0	genome.wustl.edu	37	chr1	167404660	167404660	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	tacaggccttcctgagggttCttccttctctgctaggaaag	10	11	2	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	1	167404660	167404660	C	T	SNP	CD247	ENST00000362089	human	ensembl	69_37n	-1	known	silent	c.312	p.K104	0.997	NULL	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821	87	0	0	53	9	14.52	-	-	-	T	167404660	C	T	167404660	2	4	244	1	0	0	0	0	0	0	0	1	3017	912	32	2		2	CD247	1	167404660	Silent	SNP	C	TCGA-AC-A2FB-01A-11D-A17D-09	157040935	167404660	81845961	2	23483										
BCL11A	0	genome.wustl.edu	37	chr2	60687466	60687466	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	tcctacagggagtggggctgGagggcgatggggaaggggag	23	5	0	0			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	2	60687466	60687466	G	T	SNP	BCL11A	ENST00000477659	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866	12	0	0	11	4	26.67	-	-	-	T	60687466	G	T	60687466	1	4	244	0	1	0	0	0	0	0	0	0	1367	1189	41	2		2	BCL11A	2	60687466	RNA	SNP	G	TCGA-AC-A2FB-01A-11D-A17D-09		60687466	182511907	3	23484										
VIL1	0	genome.wustl.edu	37	chr2	219294019	219294019	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ttcctgcagggcatgactctGgccaaggagatccgagacca	12	12	1	3			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	2	219294019	219294019	G	T	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	silent	c.579	p.L193	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	34	0	0	14	3	17.65	-	-	-	T	219294019	G	T	219294019	2	4	244	1	0	0	0	0	0	0	0	1	17261	1335	47	4		4	VIL1	2	219294019	Silent	SNP	G	TCGA-AC-A2FB-01A-11D-A17D-09	158606553	219294019	23905354	4	23485										
OSBPL10	0	genome.wustl.edu	37	chr3	31871579	31871579	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	atactgactcttggctcttcGggcggctgcaggcgacttgt	13	11	2	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	3	31871579	31871579	G	A	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	nonsense	c.682	p.R228*	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	47	0	0	30	6	16.67	-	-	-	A	31871579	G	A	31871579	4	1	244	1	0	0	0	0	0	1	0	0	11348	1124	39	1	1648	1	OSBPL10	3	31871579	Nonsense_Mutation	SNP	G	TCGA-AC-A2FB-01A-11D-A17D-09		31871579	166150851	5	23486										
TMEM175	0	genome.wustl.edu	37	chr4	947114	947114	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ggccctgtgctttgcagcggCcatcttctctctcttctttg	9	14	4	0			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	4	947114	947114	C	G	SNP	TMEM175	ENST00000264771	human	ensembl	69_37n	1	known	missense	c.599	p.A200G	0.479	NULL	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419	130	0	0	30	6	16.67	-	-	-	G	947114	C	G	947114	3	3	244	1	0	0	0	0	1	0	0	0	16186	739	26	4	625	4	TMEM175	4	947114	Missense_Mutation	SNP	C	TCGA-AC-A2FB-01A-11D-A17D-09		947114	190207162	6	23487										
DDR1	0	genome.wustl.edu	37	chr6	30859824	30859824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ctggcagatggtgtggtgggGctggatgactttaggaagag	19	4	0	3			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	6	30859824	30859824	G	T	SNP	DDR1	ENST00000446312	human	ensembl	69_37n	1	known	missense	c.611	p.G204V	0.998	NULL	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	102	0	0	32	4	11.11	-	-	-	T	30859824	G	T	30859824	3	4	244	1	0	0	0	0	1	0	0	0	4367	1190	42	4	733	4	DDR1	6	30859824	Missense_Mutation	SNP	G	TCGA-AC-A2FB-01A-11D-A17D-09		30859824	140255243	7	23488										
A1CF	0	genome.wustl.edu	37	chr10	52596055	52596055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	tgtccacactggcacaaaccCctaagaggcgcccatttctg	8	15	1	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	10	52596055	52596055	C	T	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	missense	c.383	p.G128E	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	93	0	0	31	5	13.89	-	-	-	T	52596055	C	T	52596055	3	4	244	1	0	0	0	0	1	0	0	0	2	623	22	4	1433	4	A1CF	10	52596055	Missense_Mutation	SNP	C	TCGA-AC-A2FB-01A-11D-A17D-09		52596055	82938692	8	23489										
ANKRD1	0	genome.wustl.edu	37	chr10	92675332	92675332	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	gttgagatccgcgccatacaTaatcaggagtcggatcatct	10	10	3	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	10	92675332	92675332	T	A	SNP	ANKRD1	ENST00000371697	human	ensembl	69_37n	-1	known	missense	c.817	p.M273L	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD1	HGNC	ENSG00000148677	119	0	0	52	7	11.86	-	-	-	A	92675332	T	A	92675332	3	1	244	1	0	0	0	0	1	0	0	0	637	1406	49	5	150	5	ANKRD1	10	92675332	Missense_Mutation	SNP	T	TCGA-AC-A2FB-01A-11D-A17D-09	40079277	92675332	42859415	9	23490										
CBX8	0	genome.wustl.edu	37	chr17	77768523	77768523	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ggtcacgtccgtgaccaccaCcttctccaggttagtcaggg	11	14	3	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	17	77768523	77768523	C	G	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.1081	p.V361L	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	31	0	0	11	3	21.43	-	-	-	G	77768523	C	G	77768523	3	3	244	1	0	0	0	0	1	0	0	0	2749	507	18	4	67	4	CBX8	17	77768523	Missense_Mutation	SNP	C	TCGA-AC-A2FB-01A-11D-A17D-09		77768523	3426687	10	23491										
TMX3	0	genome.wustl.edu	37	chr18	66364475	66364475	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	aatattacctcaggaaccacTtcttctgaggcagaaaagaa	7	9	3	3			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	18	66364475	66364475	T	A	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	missense	c.558	p.E186D	0.199	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	53	0	0	27	3	10	-	-	-	A	66364475	T	A	66364475	3	1	244	1	0	0	0	0	1	0	0	0	16363	1606	56	5	842	5	TMX3	18	66364475	Missense_Mutation	SNP	T	TCGA-AC-A2FB-01A-11D-A17D-09		66364475	11712773	11	23492										
DUS3L	0	genome.wustl.edu	37	chr19	5789558	5789558	+	Frame_Shift_Del	DEL	T	T	-													0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	cctgcaccaggttctgtcccTcgggcctcaggtgggcccca							TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	19	5789558	5789558	T	-	DEL	DUS3L	ENST00000309061	human	ensembl	69_37n	-1	known	frame_shift_del	c.560	p.E187fs	0.104	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994	17	0	0	3	2	40	-	-	-	-	5789558	T	-	5789558	7	5	244	1	0	1	0	1	0	0	0	0	4842	1551	54	0	1436	0	DUS3L	19	5789558	Frame_Shift_Del	DEL	T	TCGA-AC-A2FB-01A-11D-A17D-09		5789558	53339425	12	23493										
NOTCH3	0	genome.wustl.edu	37	chr19	15292514	15292514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ggggttgctcaggcactcatCcacatcgcgggcgcatcgtg	14	13	2	0			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	19	15292514	15292514	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.2665	p.D889N	1.000	smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	27	0	0	6	3	33.33	-	-	-	T	15292514	C	T	15292514	3	4	244	1	0	0	0	0	1	0	0	0	10622	855	30	2	4368	2	NOTCH3	19	15292514	Missense_Mutation	SNP	C	TCGA-AC-A2FB-01A-11D-A17D-09	9502956	15292514	43836469	13	23494										
GDF5	0	genome.wustl.edu	37	chr20	34022326	34022326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	agtttcggaagagcttccagAtgtcgaacacctcccagcca	9	13	0	2			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	20	34022326	34022326	A	G	SNP	GDF5	ENST00000374369	human	ensembl	69_37n	-1	known	missense	c.887	p.I296T	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965	27	0	0	9	3	25	-	-	-	G	34022326	A	G	34022326	3	3	244	1	0	0	0	0	1	0	0	0	6368	333	12	5	622	5	GDF5	20	34022326	Missense_Mutation	SNP	A	TCGA-AC-A2FB-01A-11D-A17D-09		34022326	29003194	14	23495										
RUNX1	0	genome.wustl.edu	37	chr21	36259142	36259142	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	ccctctccgggccagtacctTgaaagcgatgggcagggtct	13	13	2	1			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	21	36259142	36259142	T	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	nonsense	c.349	p.K117*	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	44	0	0	11	5	31.25	-	-	-	A	36259142	T	A	36259142	4	1	244	1	0	0	0	0	0	1	0	0	13832	1821	63	5	1150	5	RUNX1	21	36259142	Nonsense_Mutation	SNP	T	TCGA-AC-A2FB-01A-11D-A17D-09		36259142	11870753	15	23496										
MYH9	0	genome.wustl.edu	37	chr22	36702619	36702620	+	Frame_Shift_Ins	INS	-	-	C													0.0625	1	0.899258321938821	1.16666666666667	0	1.75	1	1	0	gcagtgcggtctccgacatgINSccggccacctggtccaggcc							TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	22	36702619	36702620	-	C	INS	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1878_1877	p.M627fs	1.000:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	46	0	0	14	2	12.5	-	-	-	C	36702620	-	C	36702619	7	5	244	1	0	1	1	0	0	0	0	0	10114	1306	46	0	4108	0	MYH9	22	36702619	Frame_Shift_Ins	INS	-	TCGA-AC-A2FB-01A-11D-A17D-09		36702619	14601947	16	23497										
TRIM62	0	genome.wustl.edu	37	chr1	33623922	33623922	+	Frame_Shift_Del	DEL	G	G	-													0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ggcctgtgtacttggaggtcGggaagtcttcatatgtgagg							TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	33623922	33623922	G	-	DEL	TRIM62	ENST00000291416	human	ensembl	69_37n	-1	known	frame_shift_del	c.809	p.P270fs	0.999	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM62	HGNC	ENSG00000116525	44	0	0	50	8	13.79	-	-	-	-	33623922	G	-	33623922	7	5	245	1	0	1	0	1	0	0	0	0	16633	1116	39	0	626	0	TRIM62	1	33623922	Frame_Shift_Del	DEL	G	TCGA-AC-A2FE-01A-11D-A19Y-09		33623922	215626699	1	23498										
DENND2D	0	genome.wustl.edu	37	chr1	111730159	111730159	+	RNA	SNP	G	G	A													0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ctgacagttttgctgatcctGccacactggcaggggctgaa							TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	111730159	111730159	G	A	SNP	DENND2D	ENST00000468692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	35	0	0	100	15	13.04	-	-	-	A	111730159	G	A	111730159	1	1	245	0	1	0	0	0	0	0	0	0	4467	1334	46	4		4	DENND2D	1	111730159	RNA	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09	78106237	111730159	137520462	2	23499	218	2								
DENND2D	0	genome.wustl.edu	37	chr1	111730160	111730160	+	RNA	SNP	C	C	A													0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	tgacagttttgctgatcctgCcacactggcaggggctgaag							TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	111730160	111730160	C	A	SNP	DENND2D	ENST00000468692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	35	0	0	100	14	12.28	-	-	-	A	111730160	C	A	111730160	1	1	245	0	1	0	0	0	0	0	0	0	4467	754	26	4		4	DENND2D	1	111730160	RNA	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09	1	111730160	137520461	3	23500	218	2								
FLG	0	genome.wustl.edu	37	chr1	152280782	152280782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	tcctgattgttccttgtcatAtgtttttctgcttgcacttc	6	10	2	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	152280782	152280782	A	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.6580	p.Y2194H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	83	0	0	156	24	13.26	-	-	-	G	152280782	A	G	152280782	3	3	245	1	0	0	0	0	1	0	0	0	5968	449	16	5	5609	5	FLG	1	152280782	Missense_Mutation	SNP	A	TCGA-AC-A2FE-01A-11D-A19Y-09	40550622	152280782	96969839	4	23501										
LHX9	0	genome.wustl.edu	37	chr1	197898292	197898292	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	gaccactttaacagacctgaCcaatcccactatcactgtag	5	14	1	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	197898292	197898292	C	G	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	missense	c.1097	p.T366S	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	17	0	0	32	10	23.81	-	-	-	G	197898292	C	G	197898292	3	3	245	1	0	0	0	0	1	0	0	0	8832	507	18	4	1147	4	LHX9	1	197898292	Missense_Mutation	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09	45617510	197898292	51352329	5	23502										
FAM89A	0	genome.wustl.edu	37	chr1	231161773	231161773	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ctgggttcagatcttggctcCgccactcaccagctgagaaa	10	13	3	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	1	231161773	231161773	C	T	SNP	FAM89A	ENST00000494111	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM89A	HGNC	ENSG00000182118	9	0	0	18	18	50	-	-	-	T	231161773	C	T	231161773	1	4	245	0	1	0	0	0	0	0	0	0	5691	667	23	1		1	FAM89A	1	231161773	RNA	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09	33263481	231161773	18088848	6	23503										
NPAS2	0	genome.wustl.edu	37	chr2	101437561	101437561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	gacgcacctttgacctttctGaagagctgggcaggtcggta	13	10	1	3			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	2	101437561	101437561	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.73	p.E25K	0.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	31	0	0	54	7	11.29	-	-	-	A	101437561	G	A	101437561	3	1	245	1	0	0	0	0	1	0	0	0	10635	1305	45	2		2	NPAS2	2	101437561	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		101437561	141761812	7	23504										
MUC4	0	genome.wustl.edu	37	chr3	195513779	195513779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	acctgtggatactgaggaagCgtcggtgacaggaagagggg	18	6	0	3			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	3	195513779	195513779	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.4672	p.A1558T	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	48	0	0	47	6	11.11	-	-	-	T	195513779	C	T	195513779	3	4	245	1	0	0	0	0	1	0	0	0	10050	768	27	1		1	MUC4	3	195513779	Missense_Mutation	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09		195513779	2508651	8	23505										
DCUN1D4	0	genome.wustl.edu	37	chr4	52780048	52780048	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	atgtgtataaaaggaaaaagGttcacctagagattatttct	8	4	2	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	4	52780048	52780048	G	C	SNP	DCUN1D4	ENST00000508257	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCUN1D4	HGNC	ENSG00000109184	24	0	0	38	6	13.33	-	-	-	C	52780048	G	C	52780048	1	2	245	0	1	0	0	0	0	0	0	0	4347	1276	44	4		4	DCUN1D4	4	52780048	RNA	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		52780048	138374228	9	23506										
NUP155	0	genome.wustl.edu	37	chr5	37350364	37350364	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ttggctaaaccaccctgcttCagccttaaagaaaaaagtag	7	10	1	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	37350364	37350364	C	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.727	p.E243K	1.000	pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	16	0	0	87	39	30.71	-	-	-	T	37350364	C	T	37350364	3	4	245	1	0	0	0	0	1	0	0	0	10829	835	29	2	3564	2	NUP155	5	37350364	Missense_Mutation	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09		37350364	143564896	10	23507										
EGFLAM	0	genome.wustl.edu	37	chr5	38370546	38370546	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	gcccccgcagctggcccagtGacatcatccggaccctctgt	10	18	2	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	38370546	38370546	G	T	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	missense	c.694	p.D232Y	0.003	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	18	0	0	35	10	22.22	-	-	-	T	38370546	G	T	38370546	3	4	245	1	0	0	0	0	1	0	0	0	5001	1290	45	2	716	2	EGFLAM	5	38370546	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09	1020182	38370546	142544714	11	23508										
MAP3K1	0	genome.wustl.edu	37	chr5	56161269	56161271	+	In_Frame_Del	DEL	TTA	TTA	-													0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	caatgttatggagaaaaactTtaaagaattttgaggtagtt							TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	5	56161269	56161271	TTA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	in_frame_del	c.1138_1140	p.L380in_frame_del	0.988:0.999:0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	23	0	0	51	10	16.13	-	-	-	-	56161271	TTA	-	56161269	7	5	245	1	0	1	0	1	0	0	0	0	9314	1838	64	0	1156	0	MAP3K1	5	56161269	In_Frame_Del	DEL	TTA	TCGA-AC-A2FE-01A-11D-A19Y-09	17790723	56161269	124753991	12	23509										
HOXA5	0	genome.wustl.edu	37	chr7	27181431	27181431	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	cgggatccgctaatactgctCagtactttaaacgctcagat	8	11	2	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	27181431	27181431	C	T	SNP	HOXA5	ENST00000520854	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	HOXA5	HGNC	ENSG00000106004	19	0	0	28	12	30	-	-	-	T	27181431	C	T	27181431	1	4	245	0	1	0	0	0	0	0	0	0	7346	841	29	2		2	HOXA5	7	27181431	RNA	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09		27181431	131957232	13	23510										
TNS3	0	genome.wustl.edu	37	chr7	47481602	47481602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	gacccacacagacactcaccGcagaggtttatcacggcaga	9	14	2	3			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	47481602	47481602	G	A	SNP	TNS3	ENST00000457718	human	ensembl	69_37n	-1	putative	missense	c.286	p.R96W	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Tyr_Pase_cat,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_stop_codon:bad_bp_length_for_coding_region	TNS3	HGNC	ENSG00000136205	8	0	0	16	15	48.39	-	-	-	A	47481602	G	A	47481602	3	1	245	1	0	0	0	0	1	0	0	0	16439	1101	38	1		1	TNS3	7	47481602	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09	20300171	47481602	111657061	14	23511										
GPC2	0	genome.wustl.edu	37	chr7	99767587	99767587	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	agccccagccttagagggctAgagactataccttctaagga	10	11	1	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	7	99767587	99767587	A	G	SNP	GPC2	ENST00000471050	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPC2	HGNC	ENSG00000213420	16	0	0	27	11	28.95	-	-	-	G	99767587	A	G	99767587	1	3	245	0	1	0	0	0	0	0	0	0	6648	435	15	5		5	GPC2	7	99767587	RNA	SNP	A	TCGA-AC-A2FE-01A-11D-A19Y-09	52285985	99767587	59371076	15	23512										
ASTN2	0	genome.wustl.edu	37	chr9	119770383	119770383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	tggctcaccggtttctgggtCgcagagctgctcacaggcat	13	12	3	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	9	119770383	119770383	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.1579	p.D527N	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	22	0	0	50	13	20.63	-	-	-	T	119770383	C	T	119770383	3	4	245	1	0	0	0	0	1	0	0	0	1069	884	31	1	2740	1	ASTN2	9	119770383	Missense_Mutation	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09		119770383	21443048	16	23513										
RRP12	0	genome.wustl.edu	37	chr10	99118293	99118293	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ctgcctggcacagcgtcataCctgcggttgagcttgcttct	11	13	2	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	10	99118293	99118293	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	splice_site	c.3791+1	e33+1	1.000	-	-	-	no_errors	RRP12	HGNC	ENSG00000052749	11	0	0	19	5	20.83	-	-	-	T	99118293	C	T	99118293	5	4	245	1	0	0	0	0	0	0	1	0	13772	521	18	4	109	4	RRP12	10	99118293	Splice_Site	SNP	C	TCGA-AC-A2FE-01A-11D-A19Y-09		99118293	36416454	17	23514										
SLC43A3	0	genome.wustl.edu	37	chr11	57177569	57177569	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	agcgaaggcaccgtcgagcaGagggccaccgccaaagtgga	15	12	0	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	11	57177569	57177569	G	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	silent	c.1086	p.L362	0.953	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	13	0	0	14	6	30	-	-	-	A	57177569	G	A	57177569	2	1	245	1	0	0	0	0	0	0	0	1	14723	929	33	2		2	SLC43A3	11	57177569	Silent	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		57177569	77828947	18	23515										
ODZ4	0	genome.wustl.edu	37	chr11	78381280	78381280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	tggtcttcagcatgcctgccGtctcgtcataggtgaaactg	11	11	4	1			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	11	78381280	78381280	G	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.6110	p.T2037K	0.976	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	28	0	0	47	11	18.97	-	-	-	T	78381280	G	T	78381280	3	4	245	1	0	0	0	0	1	0	0	0	10910	1145	40	3	2211	3	ODZ4	11	78381280	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09	21203711	78381280	56625236	19	23516										
SOCS2	0	genome.wustl.edu	37	chr12	93968720	93968720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	caagcttaaacaatttgacaGtgtggttcatctgatcgact	8	8	2	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	12	93968720	93968720	G	T	SNP	SOCS2	ENST00000340600	human	ensembl	69_37n	1	known	missense	c.362	p.S121I	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,prints_SH2,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS2	HGNC	ENSG00000120833	9	0	0	21	5	19.23	-	-	-	T	93968720	G	T	93968720	3	4	245	1	0	0	0	0	1	0	0	0	15003	1029	36	4	368	4	SOCS2	12	93968720	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		93968720	39883175	20	23517										
CEP152	0	genome.wustl.edu	37	chr15	49085545	49085545	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	tattacaagctggtgattcaGatatcgaatttgacgttcac	8	7	2	3			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	15	49085545	49085545	G	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.805	p.L269	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	16	0	0	56	16	22.22	-	-	-	A	49085545	G	A	49085545	2	1	245	1	0	0	0	0	0	0	0	1	3277	933	33	2		2	CEP152	15	49085545	Silent	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		49085545	53445847	21	23518										
ZNF710	0	genome.wustl.edu	37	chr15	90611206	90611206	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	cggctggacatcaacgtgcaGattgacgactcctatctggt	11	11	2	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	15	90611206	90611206	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	silent	c.837	p.Q279	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	20	0	0	34	8	19.05	-	-	-	A	90611206	G	A	90611206	2	1	245	1	0	0	0	0	0	0	0	1	18211	933	33	2		2	ZNF710	15	90611206	Silent	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09	41525661	90611206	11920186	22	23519										
NTN3	0	genome.wustl.edu	37	chr16	2522060	2522060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	aggcttttgagctggtcttcGtgagcctgcgcttctgctca	12	11	3	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	16	2522060	2522060	G	C	SNP	NTN3	ENST00000293973	human	ensembl	69_37n	1	known	missense	c.358	p.V120L	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN3	HGNC	ENSG00000162068	24	0	0	40	7	14.58	-	-	-	C	2522060	G	C	2522060	3	2	245	1	0	0	0	0	1	0	0	0	10774	1145	40	3	360	3	NTN3	16	2522060	Missense_Mutation	SNP	G	TCGA-AC-A2FE-01A-11D-A19Y-09		2522060	87832693	23	23520										
PLA2G6	0	genome.wustl.edu	37	chr22	38543453	38543453	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ttgttccacagagagtgcgtTgattaacagttaactactgg	10	7	0	2			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	22	38543453	38543453	T	C	SNP	PLA2G6	ENST00000420435	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLA2G6	HGNC	ENSG00000184381	28	0	0	63	9	12.5	-	-	-	C	38543453	T	C	38543453	1	2	245	0	1	0	0	0	0	0	0	0	12082	1827	63	5		5	PLA2G6	22	38543453	RNA	SNP	T	TCGA-AC-A2FE-01A-11D-A19Y-09		38543453	12761113	24	23521										
SPIN2A	0	genome.wustl.edu	37	chrX	57162385	57162385	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	6	0.0862468138995203	2.57142857142857	0	3.27272727272727	0.00466200466200466	0.0844340844340844	0	ggagccatcttctttggtatAttccacatgcttacctatta	6	10	2	0			TCGA-AC-A2FE-01A-11D-A19Y-09	TCGA-AC-A2FE-11B-22D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f97dcfdf-eed2-4844-8547-162917143704	a2826b46-da0f-4e0d-9f06-bfae025386a6	X	57162385	57162385	A	G	SNP	SPIN2A	ENST00000374906	human	ensembl	69_37n	-1	known	missense	c.646	p.Y216H	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN2A	HGNC	ENSG00000147059	30	0	0	51	11	17.74	-	-	-	G	57162385	A	G	57162385	3	3	245	1	0	0	0	0	1	0	0	0	15144	449	16	5	134	5	SPIN2A	23	57162385	Missense_Mutation	SNP	A	TCGA-AC-A2FE-01A-11D-A19Y-09		57162385	98108175	25	23522										
FAM131C	0	genome.wustl.edu	37	chr1	16386447	16386447	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	gggacagctcccagcctgccGgctgggcactccagcccttc	12	18	0	0			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	16386447	16386447	G	C	SNP	FAM131C	ENST00000375662	human	ensembl	69_37n	-1	known	missense	c.368	p.P123R	0.000	superfamily_Chromodomain-like	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519	12	0	0	4	6	60	-	-	-	C	16386447	G	C	16386447	3	2	246	1	0	0	0	0	1	0	0	0	5481	1116	39	3	486	3	FAM131C	1	16386447	Missense_Mutation	SNP	G	TCGA-AC-A2FF-01A-11D-A17D-09		16386447	232864174	1	23523										
PDE4DIP	0	genome.wustl.edu	37	chr1	145075903	145075903	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	ccccagtcctagctacggttCctgcttgttttcctggtgtc	9	14	0	0			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	145075903	145075903	C	T	SNP	PDE4DIP	ENST00000528552	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	11	0	0	12	4	25	-	-	-	T	145075903	C	T	145075903	1	4	246	0	1	0	0	0	0	0	0	0	11716	870	30	2		2	PDE4DIP	1	145075903	RNA	SNP	C	TCGA-AC-A2FF-01A-11D-A17D-09	128689456	145075903	104174718	2	23524										
AKT3	0	genome.wustl.edu	37	chr1	243716076	243716076	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	gccctgaaagcaatgattttGcatctgaagagagtgttcga	11	7	1	4			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	243716076	243716076	G	C	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	missense	c.1118	p.A373G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	63	0	0	55	8	12.7	-	-	-	C	243716076	G	C	243716076	3	2	246	1	0	0	0	0	1	0	0	0	481	1319	46	4	385	4	AKT3	1	243716076	Missense_Mutation	SNP	G	TCGA-AC-A2FF-01A-11D-A17D-09	98640173	243716076	5534545	3	23525										
STK39	0	genome.wustl.edu	37	chr2	168869176	168869176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	cgtgaccatccaccaagccaGcagagaagagctcctgagat	10	13	0	4			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	2	168869176	168869176	G	T	SNP	STK39	ENST00000355999	human	ensembl	69_37n	-1	known	missense	c.1466	p.A489D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648	48	0	0	39	6	13.33	-	-	-	T	168869176	G	T	168869176	3	4	246	1	0	0	0	0	1	0	0	0	15396	971	34	4	183	4	STK39	2	168869176	Missense_Mutation	SNP	G	TCGA-AC-A2FF-01A-11D-A17D-09		168869176	74330197	4	23526										
BMPR2	0	genome.wustl.edu	37	chr2	203417599	203417599	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	caatccaatgtctactgctaTgcagaatgaacggtaagacc	8	10	1	3			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	2	203417599	203417599	T	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	missense	c.1574	p.M525K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	28	0	0	16	3	15.79	-	-	-	A	203417599	T	A	203417599	3	1	246	1	0	0	0	0	1	0	0	0	1476	1464	51	5	1616	5	BMPR2	2	203417599	Missense_Mutation	SNP	T	TCGA-AC-A2FF-01A-11D-A17D-09	34548423	203417599	39781774	5	23527										
QRICH1	0	genome.wustl.edu	37	chr3	49095083	49095083	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	gatgtgctcctccgggatttCtgcagcctggatctgctggg	14	11	2	0			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	3	49095083	49095083	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	missense	c.550	p.E184K	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	44	0	0	25	4	13.79	-	-	-	T	49095083	C	T	49095083	3	4	246	1	0	0	0	0	1	0	0	0	12962	922	32	2	1812	2	QRICH1	3	49095083	Missense_Mutation	SNP	C	TCGA-AC-A2FF-01A-11D-A17D-09		49095083	148927347	6	23528										
MAP3K1	0	genome.wustl.edu	37	chr5	56176593	56176594	+	Frame_Shift_Ins	INS	-	-	GA													0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	actgtgcaaaggccaagcagINSgagagttggcagttggcaga							TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	5	56176593	56176594	-	GA	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.2143_2144	p.L717fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	76	0	0	66	10	13.16	-	-	-	GA	56176594	-	GA	56176593	7	5	246	1	0	1	1	0	0	0	0	0	9314	1001	35	0	2189	0	MAP3K1	5	56176593	Frame_Shift_Ins	INS	-	TCGA-AC-A2FF-01A-11D-A17D-09		56176593	124738667	7	23529										
GRM1	0	genome.wustl.edu	37	chr6	146720188	146720188	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	ggcctctcctctgcgatgtgCtactctgctttagtgactaa	9	12	3	1			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	6	146720188	146720188	C	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	nonsense	c.2013	p.C671*	1.000	pfam_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	58	0	0	36	5	12.2	-	-	-	A	146720188	C	A	146720188	4	1	246	1	0	0	0	0	0	1	0	0	6847	805	28	4	2039	4	GRM1	6	146720188	Nonsense_Mutation	SNP	C	TCGA-AC-A2FF-01A-11D-A17D-09		146720188	24394879	8	23530										
PTEN	0	genome.wustl.edu	37	chr10	89711975	89711975	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	ggcactgttgtttcacaagaTgatgtttgaaactattccaa	8	7	1	3			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	10	89711975	89711975	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.593	p.M198K	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	57	0	0	39	7	15.22	-	-	-	A	89711975	T	A	89711975	3	1	246	1	0	0	0	0	1	0	0	0	12818	1464	51	5	615	5	PTEN	10	89711975	Missense_Mutation	SNP	T	TCGA-AC-A2FF-01A-11D-A17D-09		89711975	45822772	9	23531										
CDH1	0	genome.wustl.edu	37	chr16	68835665	68835666	+	Frame_Shift_Del	DEL	AA	AA	-													0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	cagatggtgtgattacagtcAaaaggcctctacggtttcat							TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	16	68835665	68835666	AA	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.256_257	p.R87fs	1.000:0.727	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	67	0	0	41	5	10.87	-	-	-	-	68835666	AA	-	68835665	7	5	246	1	0	1	0	1	0	0	0	0	3124	131	5	0	266	0	CDH1	16	68835665	Frame_Shift_Del	DEL	AA	TCGA-AC-A2FF-01A-11D-A17D-09		68835665	21519088	10	23532										
RPTOR	0	genome.wustl.edu	37	chr17	78865584	78865584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	caatttctgcaccgtggcccTgcagttcatagaagaggaaa	10	10	2	2			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	17	78865584	78865584	T	C	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.2048	p.L683P	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	33	0	0	36	4	10	-	-	-	C	78865584	T	C	78865584	3	2	246	1	0	0	0	0	1	0	0	0	13751	1580	55	5	2118	5	RPTOR	17	78865584	Missense_Mutation	SNP	T	TCGA-AC-A2FF-01A-11D-A17D-09		78865584	2329626	11	23533										
ZNF676	0	genome.wustl.edu	37	chr19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	gggttgagacgctactaaatCctttgccacattcttcacat	7	11	2	1			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	19	22363737	22363737	C	G	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.782	p.G261A	0.018	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	43	0	0	43	6	12.24	-	-	-	G	22363737	C	G	22363737	3	3	246	1	0	0	0	0	1	0	0	0	18179	855	30	2	988	2	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-AC-A2FF-01A-11D-A17D-09		22363737	36765246	12	23534										
ZNF223	0	genome.wustl.edu	37	chr19	44570584	44570584	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.153846153846154	2	0.535437381472753	2.26470588235294	1.69852941176471	3.39705882352941	1	1	0	cagagagtccacctgggagaGaaactctttaagtgtgacgt	12	8	1	3			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	19	44570584	44570584	G	C	SNP	ZNF223	ENST00000591793	human	ensembl	69_37n	1	known	missense	c.933	p.E311D	1.000	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC084219.2	Clone_based_vega_gene	ENSG00000267022	42	0	0	46	8	14.81	-	-	-	C	44570584	G	C	44570584	3	2	246	1	0	0	0	0	1	0	0	0	17873	933	33	2	617	2	ZNF223	19	44570584	Missense_Mutation	SNP	G	TCGA-AC-A2FF-01A-11D-A17D-09	22206847	44570584	14558399	13	23535										
NBPF1	0	genome.wustl.edu	37	chr1	16932783	16932783	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	aagtagtaaaatggtgagtgGttgtcaggggtggaggagag	19	1	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	1	16932783	16932783	G	C	SNP	NBPF1	ENST00000449853	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	13	0	0	11	4	26.67	-	-	-	C	16932783	G	C	16932783	1	2	247	0	1	0	0	0	0	0	0	0	10264	1276	44	4		4	NBPF1	1	16932783	RNA	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09		16932783	232317838	1	23536										
LPHN2	0	genome.wustl.edu	37	chr1	82409249	82409249	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ggtcagtttatcaagacaatGaaagtgaaacaggcaagaac	10	6	2	4			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	1	82409249	82409249	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.994	p.E332K	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	51	0	0	29	11	27.5	-	-	-	A	82409249	G	A	82409249	3	1	247	1	0	0	0	0	1	0	0	0	8982	1291	45	2	1008	2	LPHN2	1	82409249	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	65476466	82409249	166841372	2	23537										
PEA15	0	genome.wustl.edu	37	chr1	160183048	160183048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cgtatccccagtgccaagaaGtacaaaggtaagcggccact	10	12	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	1	160183048	160183048	G	A	SNP	PEA15	ENST00000368076	human	ensembl	69_37n	1	known	silent	c.384	p.K128	1.000	superfamily_DEATH-like	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	PEA15	HGNC	ENSG00000162734	38	0	0	29	13	30.95	-	-	-	A	160183048	G	A	160183048	2	1	247	1	0	0	0	0	0	0	0	1	11784	1020	36	4		4	PEA15	1	160183048	Silent	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	77773799	160183048	89067573	3	23538										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220364510	220364510	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cgcatagatcacaaggaattGagctactcgacttggaccct	9	11	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	1	220364510	220364510	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.1387	p.Q463E	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	38	0	0	52	9	14.75	-	-	-	C	220364510	G	C	220364510	3	2	247	1	0	0	0	0	1	0	0	0	13019	1299	45	2	2882	2	RAB3GAP2	1	220364510	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	60181462	220364510	28886111	4	23539										
MYT1L	0	genome.wustl.edu	37	chr2	1907062	1907062	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cagctgcttcacaaagcacaTtggcctggaagtaaacaaga	9	10	1	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	1907062	1907062	T	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1822	p.M608L	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	54	0	0	37	9	19.57	-	-	-	A	1907062	T	A	1907062	3	1	247	1	0	0	0	0	1	0	0	0	10179	1493	52	5	1786	5	MYT1L	2	1907062	Missense_Mutation	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09		1907062	241292311	5	23540										
MAP4K4	0	genome.wustl.edu	37	chr2	102445999	102445999	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ttcacattcatcatgtgattCaccgggatatcaagggccag	9	10	5	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	102445999	102445999	C	T	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.451	p.H151Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	49	0	0	54	16	22.86	-	-	-	T	102445999	C	T	102445999	3	4	247	1	0	0	0	0	1	0	0	0	9333	826	29	2	473	2	MAP4K4	2	102445999	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	100538937	102445999	140753374	6	23541										
KYNU	0	genome.wustl.edu	37	chr2	143798193	143798193	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	attttctgttccaaacaaagAtgttttccaagaactagaaa	5	7	1	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	143798193	143798193	A	T	SNP	KYNU	ENST00000264170	human	ensembl	69_37n	1	known	missense	c.1238	p.D413V	0.000	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	20	0	0	13	4	23.53	-	-	-	T	143798193	A	T	143798193	3	4	247	1	0	0	0	0	1	0	0	0	8641	333	12	5	1310	5	KYNU	2	143798193	Missense_Mutation	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09	41352194	143798193	99401180	7	23542										
ATF2	0	genome.wustl.edu	37	chr2	175979570	175979570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cgaacaatagctgatgtgggCtgtgcagtttgtgccaatgg	14	7	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	175979570	175979570	C	G	SNP	ATF2	ENST00000264110	human	ensembl	69_37n	-1	known	missense	c.474	p.Q158H	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF2	HGNC	ENSG00000115966	62	0	0	60	19	24.05	-	-	-	G	175979570	C	G	175979570	3	3	247	1	0	0	0	0	1	0	0	0	1084	796	28	4	1071	4	ATF2	2	175979570	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	32181377	175979570	67219803	8	23543										
TTN	0	genome.wustl.edu	37	chr2	179499546	179499546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tttgtgcaaagttaagaagcGttttccaccttctgctttga	8	8	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	179499546	179499546	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34351	p.R11451C	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	39	16	29.09	-	-	-	A	179499546	G	A	179499546	3	1	247	1	0	0	0	0	1	0	0	0	16832	1145	40	1	66174	1	TTN	2	179499546	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	3519976	179499546	63699827	9	23544										
SPHKAP	0	genome.wustl.edu	37	chr2	228882171	228882171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tcattttccatctggttcacCatgaacctggaaaactcatc	5	12	4	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	2	228882171	228882171	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.3399	p.M1133I	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	12	0	0	9	7	43.75	-	-	-	T	228882171	C	T	228882171	3	4	247	1	0	0	0	0	1	0	0	0	15139	594	21	4	1727	4	SPHKAP	2	228882171	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	49382625	228882171	14317202	10	23545										
POLR2B	0	genome.wustl.edu	37	chr4	57889849	57889849	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tacgctctgttaggattccaCagattggagacaaatttgct	9	8	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	4	57889849	57889849	C	T	SNP	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	nonsense	c.2788	p.Q930*	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	33	0	0	16	3	15.79	-	-	-	T	57889849	C	T	57889849	4	4	247	1	0	0	0	0	0	1	0	0	12289	479	17	4	2866	4	POLR2B	4	57889849	Nonsense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		57889849	133264427	11	23546										
PCDHA5	0	genome.wustl.edu	37	chr5	140201501	140201501	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ggaaccttcgttggccgcatCgcgcaggacctagggctgga	15	12	0	0			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	5	140201501	140201501	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	silent	c.141	p.I47	0.997	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	24	0	0	25	8	24.24	-	-	-	T	140201501	C	T	140201501	2	4	247	1	0	0	0	0	0	0	0	1	11600	874	31	1		1	PCDHA5	5	140201501	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		140201501	40713759	12	23547										
WWC1	0	genome.wustl.edu	37	chr5	167857146	167857146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ccccttttcatttcaggtatGatgagaagaataagcaattt	7	7	2	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	5	167857146	167857146	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.2005	p.D669N	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	10	0	0	11	9	45	-	-	-	A	167857146	G	A	167857146	3	1	247	1	0	0	0	0	1	0	0	0	17508	1290	45	2	2059	2	WWC1	5	167857146	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	27655645	167857146	13058114	13	23548										
FAM153C	0	genome.wustl.edu	37	chr5	177434006	177434006	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ggtcggaggccgccagtgtcGctgctgaagggcggaccagg	19	11	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	5	177434006	177434006	G	T	SNP	FAM153C	ENST00000508839	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	FAM153C	HGNC	ENSG00000204677	9	0	0	9	6	40	-	-	-	T	177434006	G	T	177434006	1	4	247	0	1	0	0	0	0	0	0	0	5502	1102	38	3		3	FAM153C	5	177434006	RNA	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	9576860	177434006	3481254	14	23549										
GRM4	0	genome.wustl.edu	37	chr6	34100808	34100808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ggagaccgagctccctgaagCaccgatgacacccaccacac	9	17	0	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	6	34100808	34100808	C	T	SNP	GRM4	ENST00000374181	human	ensembl	69_37n	-1	known	missense	c.466	p.A156T	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	14	0	0	14	7	33.33	-	-	-	T	34100808	C	T	34100808	3	4	247	1	0	0	0	0	1	0	0	0	6850	710	25	4	2312	4	GRM4	6	34100808	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		34100808	137014259	15	23550										
PKHD1	0	genome.wustl.edu	37	chr6	51890742	51890742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	catacatgaaggtgaagcctTtccccaccaagcttggtgaa	9	11	0	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	6	51890742	51890742	T	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.3866	p.K1289R	0.001	smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	26	0	0	25	4	13.79	-	-	-	C	51890742	T	C	51890742	3	2	247	1	0	0	0	0	1	0	0	0	12045	1841	64	5	8541	5	PKHD1	6	51890742	Missense_Mutation	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09	17789934	51890742	119224325	16	23551										
REV3L	0	genome.wustl.edu	37	chr6	111686492	111686492	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gcttgtgttaacagtactctTctaagagtgtcagtattact	8	7	3	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	6	111686492	111686492	T	A	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.6729	p.R2243S	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	93	0	0	68	19	21.84	-	-	-	A	111686492	T	A	111686492	3	1	247	1	0	0	0	0	1	0	0	0	13323	1780	62	5	2735	5	REV3L	6	111686492	Missense_Mutation	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09	59795750	111686492	59428575	17	23552										
AMPH	0	genome.wustl.edu	37	chr7	38431520	38431520	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cccggaggagccgcgtcctcGgtggtctccttgggctctgc	15	15	2	0			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	7	38431520	38431520	G	A	SNP	AMPH	ENST00000441628	human	ensembl	69_37n	-1	novel	nonsense	c.1354	p.R452*	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin,prints_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AMPH	HGNC	ENSG00000078053	27	0	0	27	9	25	-	-	-	A	38431520	G	A	38431520	4	1	247	1	0	0	0	0	0	1	0	0	588	1103	39	1	392	1	AMPH	7	38431520	Nonsense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09		38431520	120707143	18	23553										
ZAN	0	genome.wustl.edu	37	chr7	100349667	100349667	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ccaccattccctcagaaaaaCccaccatttccacagaaaaa	2	16	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	7	100349667	100349667	C	A	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.1939	p.P647T	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	96	0	0	128	39	23.35	-	-	-	A	100349667	C	A	100349667	3	1	247	1	0	0	0	0	1	0	0	0	17610	507	18	4	1989	4	ZAN	7	100349667	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	61918147	100349667	58788996	19	23554										
FAM86B1	0	genome.wustl.edu	37	chr8	12044217	12044217	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ccccaaggtcacctgttaatGaaggctgccgggttctcgat	11	12	2	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	8	12044217	12044217	G	C	SNP	FAM86B1	ENST00000321602	human	ensembl	69_37n	-1	known	nonsense	c.50	p.S17*	0.804	NULL	NULL	-	no_errors	FAM86B1	HGNC	ENSG00000186523	13	0	0	9	4	30.77	-	-	-	C	12044217	G	C	12044217	4	2	247	1	0	0	0	0	0	1	0	0	5689	1281	45	2	540	2	FAM86B1	8	12044217	Nonsense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09		12044217	134319805	20	23555										
KIF27	0	genome.wustl.edu	37	chr9	86482724	86482724	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ctctaattcttggcgttggtTcagaactttctctacttctt	6	10	5	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	9	86482724	86482724	T	A	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.2809	p.N937Y	0.964	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	74	0	0	45	16	26.23	-	-	-	A	86482724	T	A	86482724	3	1	247	1	0	0	0	0	1	0	0	0	8348	1783	62	5	1420	5	KIF27	9	86482724	Missense_Mutation	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09		86482724	54730707	21	23556										
COL27A1	0	genome.wustl.edu	37	chr9	117063987	117063987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tcccggccccagagggcggcCcggccccccggtaggtaact	14	18	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	9	117063987	117063987	C	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.4835	p.P1612H	0.362	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	20	0	0	15	4	21.05	-	-	-	A	117063987	C	A	117063987	3	1	247	1	0	0	0	0	1	0	0	0	3715	623	22	4	5053	4	COL27A1	9	117063987	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	30581263	117063987	24149444	22	23557										
MARCH8	0	genome.wustl.edu	37	chr10	45956741	45956741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cttgcagagctcgcagcagcGcgtgtcggagctcttgatcc	13	13	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	10	45956741	45956741	G	A	SNP	MARCH8	ENST00000319836	human	ensembl	69_37n	-1	known	missense	c.361	p.R121C	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH8	HGNC	ENSG00000165406	37	0	0	26	7	21.21	-	-	-	A	45956741	G	A	45956741	3	1	247	1	0	0	0	0	1	0	0	0	9378	1087	38	1	526	1	MARCH8	10	45956741	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09		45956741	89578006	23	23558										
LDB3	0	genome.wustl.edu	37	chr10	88469670	88469670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gcttggttccaggccccaggCctcttcctacagccccgcag	10	18	1	0			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	10	88469670	88469670	C	T	SNP	LDB3	ENST00000429277	human	ensembl	69_37n	1	known	missense	c.1109	p.A370V	0.007	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367	21	0	0	13	7	35	-	-	-	T	88469670	C	T	88469670	3	4	247	1	0	0	0	0	1	0	0	0	8751	739	26	4	1460	4	LDB3	10	88469670	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	42512929	88469670	47065077	24	23559										
CPEB3	0	genome.wustl.edu	37	chr10	93870935	93870935	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	actgagctttcctcttggaaCagcagaaaggcatagccttg	10	10	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	10	93870935	93870935	C	A	SNP	CPEB3	ENST00000265997	human	ensembl	69_37n	-1	known	silent	c.1470	p.L490	0.992	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB3	HGNC	ENSG00000107864	59	0	0	39	12	23.53	-	-	-	A	93870935	C	A	93870935	2	1	247	1	0	0	0	0	0	0	0	1	3832	465	17	4		4	CPEB3	10	93870935	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	5401265	93870935	41663812	25	23560										
HTRA1	0	genome.wustl.edu	37	chr10	124273799	124273799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cgacgtcattaaaagggaaaGcaccctgaacatggtggtcc	11	10	1	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	10	124273799	124273799	G	T	SNP	HTRA1	ENST00000368984	human	ensembl	69_37n	1	known	missense	c.1367	p.S456I	0.412	superfamily_PDZ,smart_PDZ	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	34	0	0	32	10	23.81	-	-	-	T	124273799	G	T	124273799	3	4	247	1	0	0	0	0	1	0	0	0	7507	971	34	4	1401	4	HTRA1	10	124273799	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	30402864	124273799	11260948	26	23561										
ZNF143	0	genome.wustl.edu	37	chr11	9516200	9516200	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ttgttttatttagattgtttTacaaggacatgctacaagag	8	4	0	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	11	9516200	9516200	T	C	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	1	known	missense	c.653	p.L218S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	38	0	0	29	4	12.12	-	-	-	C	9516200	T	C	9516200	3	2	247	1	0	0	0	0	1	0	0	0	17828	1764	61	5	679	5	ZNF143	11	9516200	Missense_Mutation	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09		9516200	125490316	27	23562										
KDM5A	0	genome.wustl.edu	37	chr12	406343	406343	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	agattgggttcaagactactAgaggacttcacactggctgt	11	8	2	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	12	406343	406343	A	G	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	silent	c.4098	p.S1366	0.972	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	30	0	0	24	6	20	-	-	-	G	406343	A	G	406343	2	3	247	1	0	0	0	0	0	0	0	1	8186	407	15	5		5	KDM5A	12	406343	Silent	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09		406343	133445552	28	23563										
CACNA1C	0	genome.wustl.edu	37	chr12	2794920	2794920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	aggctctcctaccaggatgaCgaaaatcggcaactgacgct	10	12	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	12	2794920	2794920	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.5805	p.D1935	0.829	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	22	0	0	22	5	18.52	-	-	-	T	2794920	C	T	2794920	2	4	247	1	0	0	0	0	0	0	0	1	2565	535	19	1		1	CACNA1C	12	2794920	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	2388577	2794920	131056975	29	23564										
DDX23	0	genome.wustl.edu	37	chr12	49233677	49233677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cttggccagaagctcctccaGggataatggctgggcctgaa	13	11	0	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	12	49233677	49233677	G	C	SNP	DDX23	ENST00000308025	human	ensembl	69_37n	-1	known	missense	c.430	p.L144V	0.833	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	53	0	0	36	22	37.93	-	-	-	C	49233677	G	C	49233677	3	2	247	1	0	0	0	0	1	0	0	0	4381	991	35	4	2084	4	DDX23	12	49233677	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	46438757	49233677	84618218	30	23565										
FZD10	0	genome.wustl.edu	37	chr12	130648881	130648881	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gatcgcctgctacttttacgAacgcctcaacatggattact	7	12	1	0			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	12	130648881	130648881	A	G	SNP	FZD10	ENST00000229030	human	ensembl	69_37n	1	known	missense	c.1394	p.E465G	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD10	HGNC	ENSG00000111432	41	0	0	35	4	10.26	-	-	-	G	130648881	A	G	130648881	3	3	247	1	0	0	0	0	1	0	0	0	6178	246	9	5	1396	5	FZD10	12	130648881	Missense_Mutation	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09	81415204	130648881	3203014	31	23566										
AP1G2	0	genome.wustl.edu	37	chr14	24030620	24030620	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gccccatccaggagatctagCagatccaggagctgtgaggc	13	12	1	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	14	24030620	24030620	C	T	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	silent	c.1878	p.L626	0.760	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	30	0	0	30	8	21.05	-	-	-	T	24030620	C	T	24030620	2	4	247	1	0	0	0	0	0	0	0	1	734	697	25	4		4	AP1G2	14	24030620	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		24030620	83318920	32	23567										
CASC4	0	genome.wustl.edu	37	chr15	44673139	44673139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tatactaaagcaggctaccaAggacagagtcagtgatttcc	9	9	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	15	44673139	44673139	A	G	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.1037	p.K346R	1.000	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	49	0	0	42	13	23.64	-	-	-	G	44673139	A	G	44673139	3	3	247	1	0	0	0	0	1	0	0	0	2687	72	3	5	1067	5	CASC4	15	44673139	Missense_Mutation	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09		44673139	57858253	33	23568										
TRIP4	0	genome.wustl.edu	37	chr15	64689807	64689807	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gatgtctttgtacgataggcAcaagagaacagcaactccgt	10	9	1	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	15	64689807	64689807	A	T	SNP	TRIP4	ENST00000560920	human	ensembl	69_37n	1	known	missense	c.274	p.T92S	1.000	NULL	NULL	-	no_errors	TRIP4	HGNC	ENSG00000103671	46	0	0	34	4	10.53	-	-	-	T	64689807	A	T	64689807	3	4	247	1	0	0	0	0	1	0	0	0	16654	146	6	5	422	5	TRIP4	15	64689807	Missense_Mutation	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09	20016668	64689807	37841585	34	23569										
PPL	0	genome.wustl.edu	37	chr16	4944581	4944581	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tcccagctctccccgttgttCttctgcagggtgtagctgta	10	13	3	0			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	16	4944581	4944581	C	T	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	silent	c.1281	p.K427	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	23	0	0	26	12	31.58	-	-	-	T	4944581	C	T	4944581	2	4	247	1	0	0	0	0	0	0	0	1	12411	912	32	2		2	PPL	16	4944581	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		4944581	85410172	35	23570										
CES1	0	genome.wustl.edu	37	chr16	55862883	55862883	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	caggtggcgaggacggatgcCctgctggacatggagaataa	16	8	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	16	55862883	55862883	C	A	SNP	CES1	ENST00000360526	human	ensembl	69_37n	-1	known	missense	c.56	p.G19V	0.976	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848	32	0	0	13	10	43.48	-	-	-	A	55862883	C	A	55862883	3	1	247	1	0	0	0	0	1	0	0	0	3298	637	22	4	1702	4	CES1	16	55862883	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	50918302	55862883	34491870	36	23571										
CDH1	0	genome.wustl.edu	37	chr16	68842661	68842662	+	Frame_Shift_Ins	INS	-	-	C													0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ctggccaaggagctgacacaINSccccctgttggtgtctttat							TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	16	68842661	68842662	-	C	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.597_598	p.V201fs	0.000:0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	37	0	0	24	12	33.33	-	-	-	C	68842662	-	C	68842661	7	5	247	1	0	1	1	0	0	0	0	0	3124	146	6	0	615	0	CDH1	16	68842661	Frame_Shift_Ins	INS	-	TCGA-AC-A2FG-01A-11D-A17D-09	12979778	68842661	21512092	37	23572										
KRT32	0	genome.wustl.edu	37	chr17	39623127	39623127	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	caccttctgctggagctcctCaatggtcctgaaatgagact	9	12	2	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	17	39623127	39623127	C	T	SNP	KRT32	ENST00000225899	human	ensembl	69_37n	-1	known	missense	c.451	p.E151K	0.989	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	31	0	0	21	6	22.22	-	-	-	T	39623127	C	T	39623127	3	4	247	1	0	0	0	0	1	0	0	0	8521	835	29	2	923	2	KRT32	17	39623127	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		39623127	41572083	38	23573										
EXOC7	0	genome.wustl.edu	37	chr17	74084181	74084182	+	Frame_Shift_Del	DEL	TT	TT	-													0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	cggtgccgtccttcggcatgTtgtactccttgtccgggtca							TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	17	74084181	74084182	TT	-	DEL	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	frame_shift_del	c.1475_1474	p.N492fs	1.000:1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	14	0	0	12	4	25	-	-	-	-	74084182	TT	-	74084181	7	5	247	1	0	1	0	1	0	0	0	0	5346	1725	60	0	768	0	EXOC7	17	74084181	Frame_Shift_Del	DEL	TT	TCGA-AC-A2FG-01A-11D-A17D-09	34461054	74084181	7111029	39	23574										
HMHA1	0	genome.wustl.edu	37	chr19	1073548	1073548	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gatctggagaaacaggagttCgagaaggccctggagacgat	15	7	1	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	19	1073548	1073548	C	T	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	silent	c.609	p.F203	0.923	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	16	0	0	13	7	35	-	-	-	T	1073548	C	T	1073548	2	4	247	1	0	0	0	0	0	0	0	1	7291	883	31	1		1	HMHA1	19	1073548	Silent	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09		1073548	58055435	40	23575										
PSG1	0	genome.wustl.edu	37	chr19	43372959	43372959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gatgccaccatatcggtcccGtatttcacattgatagggtc	9	11	1	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	19	43372959	43372959	G	A	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.937	p.R313W	0.026	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	75	0	0	51	16	23.88	-	-	-	A	43372959	G	A	43372959	3	1	247	1	0	0	0	0	1	0	0	0	12733	1144	40	1	387	1	PSG1	19	43372959	Missense_Mutation	SNP	G	TCGA-AC-A2FG-01A-11D-A17D-09	42299411	43372959	15756024	41	23576										
ZNF347	0	genome.wustl.edu	37	chr19	53644868	53644868	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	agtgaagaccttgccacattCattacatttgtaaggttttt	7	7	1	2			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	19	53644868	53644868	C	G	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	missense	c.1216	p.E406Q	0.008	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	47	0	0	37	9	19.57	-	-	-	G	53644868	C	G	53644868	3	3	247	1	0	0	0	0	1	0	0	0	17957	835	29	2	1310	2	ZNF347	19	53644868	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	10271909	53644868	5484115	42	23577										
ZNF551	0	genome.wustl.edu	37	chr19	58198258	58198258	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	actcccagtggtgaggagccAcacagtagcagcagcaagca	12	12	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	19	58198258	58198258	A	G	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	silent	c.615	p.P205	0.020	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	36	0	0	33	4	10.81	-	-	-	G	58198258	A	G	58198258	2	3	247	1	0	0	0	0	0	0	0	1	18079	146	6	5		5	ZNF551	19	58198258	Silent	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09	4553390	58198258	930725	43	23578										
SRXN1	0	genome.wustl.edu	37	chr20	629213	629213	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	tgagtccaaggccttgtagcTggtgagaggggtgcccagag	17	8	0	3			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	20	629213	629213	T	C	SNP	SRXN1	ENST00000488788	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRXN1	HGNC	ENSG00000172070	8	0	0	4	5	55.56	-	-	-	C	629213	T	C	629213	1	2	247	0	1	0	0	0	0	0	0	0	15264	1595	55	5		5	SRXN1	20	629213	RNA	SNP	T	TCGA-AC-A2FG-01A-11D-A17D-09		629213	62396307	44	23579										
HSD17B10	0	genome.wustl.edu	37	chrX	53458209	53458210	+	RNA	DEL	TG	TG	-													0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	acacaacactgcctacactcTgtgagaaaaagagactttat							TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	X	53458209	53458210	TG	-	DEL	HSD17B10	ENST00000477706	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	HSD17B10	HGNC	ENSG00000072506	9	0	0	6	3	33.33	-	-	-	-	53458210	TG	-	53458209	6	5	247	0	1	1	0	1	0	0	0	0	7430	1595	55	0		0	HSD17B10	23	53458209	RNA	DEL	TG	TCGA-AC-A2FG-01A-11D-A17D-09		53458209	101812351	45	23580										
MAGEE1	0	genome.wustl.edu	37	chrX	75648642	75648642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ctggcacctccgtgctgcccAcccccagtgagggcctaagc	11	18	0	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	X	75648642	75648642	A	G	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	missense	c.319	p.T107A	0.003	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	10	0	0	15	5	23.81	-	-	-	G	75648642	A	G	75648642	3	3	247	1	0	0	0	0	1	0	0	0	9256	159	6	5	321	5	MAGEE1	23	75648642	Missense_Mutation	SNP	A	TCGA-AC-A2FG-01A-11D-A17D-09	22190433	75648642	79621918	46	23581										
BCORL1	0	genome.wustl.edu	37	chrX	129149946	129149946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	ttcaatttagccacctgcttCcgggctgatggcctcccagt	9	14	1	1			TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	X	129149946	129149946	C	T	SNP	BCORL1	ENST00000441294	human	ensembl	69_37n	1	known	missense	c.1504	p.P502S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCORL1	HGNC	ENSG00000085185	30	0	0	16	6	27.27	-	-	-	T	129149946	C	T	129149946	3	4	247	1	0	0	0	0	1	0	0	0	1391	854	30	2	3208	2	BCORL1	23	129149946	Missense_Mutation	SNP	C	TCGA-AC-A2FG-01A-11D-A17D-09	53501304	129149946	26120614	47	23582										
IGSF1	0	genome.wustl.edu	37	chrX	130416574	130416574	+	Frame_Shift_Del	DEL	G	G	-													0.166666666666667	8	0.0604343339837314	2.41430894308943	3.77235772357724	1.9854514334617	0.619269619269619	1	0	gctggtggcatccaaaaattGaagtggtttgtcttctcctt							TCGA-AC-A2FG-01A-11D-A17D-09	TCGA-AC-A2FG-11A-22D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee5c53b4-dead-46b9-8860-3fd146104b92	61aec1b1-f2db-45a7-87a5-bec477886f85	X	130416574	130416574	G	-	DEL	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	frame_shift_del	c.1090	p.Q364fs	0.745	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	55	0	0	42	13	22.03	-	-	-	-	130416574	G	-	130416574	7	5	247	1	0	1	0	1	0	0	0	0	7650	1299	45	0	2991	0	IGSF1	23	130416574	Frame_Shift_Del	DEL	G	TCGA-AC-A2FG-01A-11D-A17D-09	1266628	130416574	24853986	48	23583										
PEX5	0	genome.wustl.edu	37	chr12	7343151	7343151	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	NA	1	1	0	ttgaggtggaaagcccaggtGcagcctctgaggcagtgagt	16	8	1	3			TCGA-AC-A2FK-01A-12D-A17W-09	TCGA-AC-A2FK-11A-22D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a6428b-1dc1-4a7b-860d-76d64663f62e	ee9c0669-7fc3-46bc-a7a0-162306969586	12	7343151	7343151	G	C	SNP	PEX5	ENST00000434354	human	ensembl	69_37n	1	known	missense	c.178	p.A60P	0.005	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197	65	0	0	84	10	10.64	-	-	-	C	7343151	G	C	7343151	3	2	248	1	0	0	0	0	1	0	0	0	11822	1319	46	4	180	4	PEX5	12	7343151	Missense_Mutation	SNP	G	TCGA-AC-A2FK-01A-12D-A17W-09		7343151	126508744	1	23584										
MIIP	0	genome.wustl.edu	37	chr1	12081870	12081870	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gtggggcaggatgctgtgcgGcggtcagtggccagggcagc	21	9	1	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	12081870	12081870	G	T	SNP	MIIP	ENST00000235332	human	ensembl	69_37n	1	known	silent	c.87	p.R29	0.428	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691	32	0	0	20	4	16.67	-	-	-	T	12081870	G	T	12081870	2	4	249	1	0	0	0	0	0	0	0	1	9656	1190	42	4		4	MIIP	1	12081870	Silent	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09		12081870	237168751	1	23585										
HOOK1	0	genome.wustl.edu	37	chr1	60334000	60334000	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gaaagcagttggcagagaaaGagagaagaattgagattctg	14	3	1	5			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	60334000	60334000	G	T	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	nonsense	c.1924	p.E642*	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	56	0	0	27	3	10	-	-	-	T	60334000	G	T	60334000	4	4	249	1	0	0	0	0	0	1	0	0	7333	943	33	2	2002	2	HOOK1	1	60334000	Nonsense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	48252130	60334000	188916621	2	23586										
CELSR2	0	genome.wustl.edu	37	chr1	109812436	109812436	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gtgctcatggacgtttctcgGcgggaggtcgggcccacagg	17	11	2	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	109812436	109812436	G	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.7101	p.R2367	0.997	smart_GPS_dom,pfscan_GPS_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	34	0	0	15	4	21.05	-	-	-	T	109812436	G	T	109812436	2	4	249	1	0	0	0	0	0	0	0	1	3251	1190	42	4		4	CELSR2	1	109812436	Silent	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	49478436	109812436	139438185	3	23587										
SLC22A15	0	genome.wustl.edu	37	chr1	116609287	116609287	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gtgtattcgtatcgcaggctGggagaagaagcattatcttt	12	6	1	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	116609287	116609287	G	T	SNP	SLC22A15	ENST00000369503	human	ensembl	69_37n	1	known	silent	c.1512	p.L504	1.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393	73	0	0	8	27	77.14	-	-	-	T	116609287	G	T	116609287	2	4	249	1	0	0	0	0	0	0	0	1	14535	1335	47	4		4	SLC22A15	1	116609287	Silent	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	6796851	116609287	132641334	4	23588										
PTPRC	0	genome.wustl.edu	37	chr1	198671524	198671524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ttctgattgcagatgtcccaGgagagaggagtacagccagc	13	9	1	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	198671524	198671524	G	A	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.448	p.G150R	0.000	pirsf_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	37	0	0	31	20	39.22	-	-	-	A	198671524	G	A	198671524	3	1	249	1	0	0	0	0	1	0	0	0	12880	1001	35	4	471	4	PTPRC	1	198671524	Missense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	82062237	198671524	50579097	5	23589										
CNTN2	0	genome.wustl.edu	37	chr1	205034993	205034993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gtacacgtgcatggcccagaCggtggtggacagcgcgtcca	15	12	0	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	1	205034993	205034993	C	T	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.1772	p.T591M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	36	0	0	28	4	12.5	-	-	-	T	205034993	C	T	205034993	3	4	249	1	0	0	0	0	1	0	0	0	3671	536	19	1	1822	1	CNTN2	1	205034993	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	6363469	205034993	44215628	6	23590										
FSIP2	0	genome.wustl.edu	37	chr2	186627943	186627943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ttcaggccaaggttcaattaTttcagcgcaggtatcaccca	8	11	4	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	2	186627943	186627943	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.1541	p.I514T	0.149	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	29	0	0	14	3	17.65	-	-	-	C	186627943	T	C	186627943	3	2	249	1	0	0	0	0	1	0	0	0	6124	1493	52	5	1587	5	FSIP2	2	186627943	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		186627943	56571430	7	23591										
HHATL	0	genome.wustl.edu	37	chr3	42739737	42739737	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	aggagtagtggcggtcagggTgggcacagctctccagtgca	17	9	2	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	3	42739737	42739737	T	G	SNP	HHATL	ENST00000310417	human	ensembl	69_37n	-1	known	missense	c.590	p.H197P	0.214	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282	42	0	0	17	13	43.33	-	-	-	G	42739737	T	G	42739737	3	3	249	1	0	0	0	0	1	0	0	0	7141	1696	59	5	952	5	HHATL	3	42739737	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		42739737	155282693	8	23592										
MUC4	0	genome.wustl.edu	37	chr3	195506189	195506189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ggcgtgaccggtggatgctgAggaagcatcggtgacaggaa	18	7	0	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	3	195506189	195506189	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12262	p.S4088P	0.060	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	11	0	0	10	5	33.33	-	-	-	G	195506189	A	G	195506189	3	3	249	1	0	0	0	0	1	0	0	0	10050	304	11	5		5	MUC4	3	195506189	Missense_Mutation	SNP	A	TCGA-AC-A2FM-01A-11D-A19Y-09	152766452	195506189	2516241	9	23593										
LRBA	0	genome.wustl.edu	37	chr4	151186181	151186181	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ttgtgagctcaagagcatttCcatcatttcgttttgttgtg	9	7	2	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	4	151186181	151186181	C	T	SNP	LRBA	ENST00000503716	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LRBA	HGNC	ENSG00000198589	29	0	0	20	9	31.03	-	-	-	T	151186181	C	T	151186181	1	4	249	0	1	0	0	0	0	0	0	0	8997	870	30	2		2	LRBA	4	151186181	RNA	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09		151186181	39968095	10	23594										
EPB41L4A	0	genome.wustl.edu	37	chr5	111481696	111481696	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ggtctggaggtctggacaccCtgttaaagaaaaaagtttgc	12	7	2	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	5	111481696	111481696	C	T	SNP	EPB41L4A	ENST00000507810	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	55	0	0	52	6	10.34	-	-	-	T	111481696	C	T	111481696	5	4	249	1	0	0	0	0	0	0	1	0	5192	696	24	4		4	EPB41L4A	5	111481696	Splice_Site	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09		111481696	69433564	11	23595										
KDM1B	0	genome.wustl.edu	37	chr6	18188091	18188091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cctcctttgctgaaagacagTgtggcagcgcccctgctgtc	11	14	0	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	6	18188091	18188091	T	C	SNP	KDM1B	ENST00000449850	human	ensembl	69_37n	1	known	missense	c.92	p.V31A	0.978	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KDM1B	HGNC	ENSG00000165097	46	0	0	31	4	11.43	-	-	-	C	18188091	T	C	18188091	3	2	249	1	0	0	0	0	1	0	0	0	8177	1711	59	5		5	KDM1B	6	18188091	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		18188091	152926976	12	23596										
IMPG1	0	genome.wustl.edu	37	chr6	76731925	76731925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	agggaaaggcccaagtgagaCgttggcaacatctgtgaaaa	13	7	1	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	6	76731925	76731925	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.574	p.V192I	0.007	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	56	0	0	45	12	21.05	-	-	-	T	76731925	C	T	76731925	3	4	249	1	0	0	0	0	1	0	0	0	7782	536	19	1	1867	1	IMPG1	6	76731925	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	58543834	76731925	94383142	13	23597										
PXDNL	0	genome.wustl.edu	37	chr8	52384839	52384839	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gatggtacctccacatcctgCggctcaaaagtaattcgggg	11	11	1	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	8	52384839	52384839	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	silent	c.720	p.P240	0.130	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	35	0	0	36	16	30.77	-	-	-	T	52384839	C	T	52384839	2	4	249	1	0	0	0	0	0	0	0	1	12931	755	27	1		1	PXDNL	8	52384839	Silent	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09		52384839	93979183	14	23598										
LYN	0	genome.wustl.edu	37	chr8	56910950	56910950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	agcggaagaactacattcacCgggacctgcgagcagctaat	11	11	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	8	56910950	56910950	C	T	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.1096	p.R366W	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	26	0	0	45	17	27.42	-	-	-	T	56910950	C	T	56910950	3	4	249	1	0	0	0	0	1	0	0	0	9174	643	23	1	1134	1	LYN	8	56910950	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	4526111	56910950	89453072	15	23599										
SPTLC1	0	genome.wustl.edu	37	chr9	94812324	94812324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tttcctccaggaagattcttGctttgtatttgtattttaac	6	7	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	9	94812324	94812324	G	T	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	missense	c.806	p.A269E	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	33	0	0	21	3	12.5	-	-	-	T	94812324	G	T	94812324	3	4	249	1	0	0	0	0	1	0	0	0	15214	1319	46	4	643	4	SPTLC1	9	94812324	Missense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09		94812324	46401107	16	23600										
PSMD5	0	genome.wustl.edu	37	chr9	123580275	123580275	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tgagcctcaaataatttgggTtcccaaagatttctgcaatt	7	8	2	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	9	123580275	123580275	T	C	SNP	PSMD5	ENST00000210313	human	ensembl	69_37n	-1	known	missense	c.1424	p.N475S	1.000	pfam_26S_Psome_nonATP_su5	pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold	-	no_errors	PSMD5	HGNC	ENSG00000095261	28	0	0	23	7	23.33	-	-	-	C	123580275	T	C	123580275	3	2	249	1	0	0	0	0	1	0	0	0	12781	1725	60	5	94	5	PSMD5	9	123580275	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09	28767951	123580275	17633156	17	23601										
ANKRD22	0	genome.wustl.edu	37	chr10	90591731	90591731	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	catagctgctgtcttctttcAcccaccgccacacttgtcca	5	17	3	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	10	90591731	90591731	A	C	SNP	ANKRD22	ENST00000371930	human	ensembl	69_37n	-1	known	missense	c.74	p.V25G	0.023	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766	100	0	0	34	28	45.16	-	-	-	C	90591731	A	C	90591731	3	2	249	1	0	0	0	0	1	0	0	0	651	159	6	5	521	5	ANKRD22	10	90591731	Missense_Mutation	SNP	A	TCGA-AC-A2FM-01A-11D-A19Y-09		90591731	44943016	18	23602										
MUC2	0	genome.wustl.edu	37	chr11	1083135	1083135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ccacctgccagcagacctgcCgctccctctccgaggccgac	9	21	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	11	1083135	1083135	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.2035	p.R679C	1.000	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	65	0	0	59	10	14.49	-	-	-	T	1083135	C	T	1083135	3	4	249	1	0	0	0	0	1	0	0	0	10047	652	23	1	2097	1	MUC2	11	1083135	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09		1083135	133923381	19	23603										
GAB2	0	genome.wustl.edu	37	chr11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G													0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cctgacttggcttgggggggCggggtgggggagctatggct							TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	11	77937657	77937657	C	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	missense	c.1061	p.R354P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	76	0	0	29	22	42.31	-	-	-	G	77937657	C	G	77937657	3	3	249	1	0	0	0	0	1	0	0	0	6198	768	27	3	997	3	GAB2	11	77937657	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	76854522	77937657	57068859	20	23604	219	2								
GAB2	0	genome.wustl.edu	37	chr11	77937662	77937662	+	Silent	SNP	T	T	G													0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cttggcttgggggggcggggTgggggagctatggctgagtc							TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	11	77937662	77937662	T	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	silent	c.1056	p.P352	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	76	0	0	33	22	39.29	-	-	-	G	77937662	T	G	77937662	2	3	249	1	0	0	0	0	0	0	0	1	6198	1683	59	5		5	GAB2	11	77937662	Silent	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09	5	77937662	57068854	21	23605	219	2								
PTPRB	0	genome.wustl.edu	37	chr12	70949883	70949883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tccaagaacaggcaatggccGtggagttctgaggccggcaa	14	10	1	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	12	70949883	70949883	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.4760	p.T1587M	0.978	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	42	0	0	55	7	11.29	-	-	-	A	70949883	G	A	70949883	3	1	249	1	0	0	0	0	1	0	0	0	12879	1145	40	1	1951	1	PTPRB	12	70949883	Missense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09		70949883	62902012	22	23606										
OLFM4	0	genome.wustl.edu	37	chr13	53624487	53624487	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ctaatgctgcctataataacCgcttttcatatgctaatgtt	5	9	1	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	13	53624487	53624487	C	A	SNP	OLFM4	ENST00000219022	human	ensembl	69_37n	1	known	missense	c.1114	p.R372S	1.000	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837	59	0	0	39	26	40	-	-	-	A	53624487	C	A	53624487	3	1	249	1	0	0	0	0	1	0	0	0	10928	652	23	3	1132	3	OLFM4	13	53624487	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09		53624487	61545391	23	23607										
FOXA1	0	genome.wustl.edu	37	chr14	38061225	38061225	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ggcgcaagtagcagccgttcTcgaacatgttgccggagtcc	13	12	1	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	14	38061225	38061225	T	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.764	p.E255V	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	43	0	0	13	33	71.74	-	-	-	A	38061225	T	A	38061225	3	1	249	1	0	0	0	0	1	0	0	0	6035	1551	54	5	658	5	FOXA1	14	38061225	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		38061225	69288315	24	23608										
IL32	0	genome.wustl.edu	37	chr16	3131810	3131810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cagacctggtggcacggggtTctggcctgggtgaaggagaa	18	8	1	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	16	3131810	3131810	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	1	putative	silent	c.516	p.V172	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	29	0	0	29	7	19.44	-	-	-	C	3131810	T	C	3131810	2	2	249	1	0	0	0	0	0	0	0	1	7746	1798	62	5		5	IL32	16	3131810	Silent	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		3131810	87222943	25	23609										
RSL1D1	0	genome.wustl.edu	37	chr16	11935601	11935601	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tggtggcttcatcccaattgCtgacaaacgaggaaaagatg	11	8	1	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	16	11935601	11935601	C	G	SNP	RSL1D1	ENST00000571133	human	ensembl	69_37n	-1	known	missense	c.806	p.S269T	0.022	NULL	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	-	no_errors	RSL1D1	HGNC	ENSG00000171490	51	0	0	14	21	60	-	-	-	G	11935601	C	G	11935601	3	3	249	1	0	0	0	0	1	0	0	0	13786	797	28	4	678	4	RSL1D1	16	11935601	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	8803791	11935601	78419152	26	23610										
C16orf88	0	genome.wustl.edu	37	chr16	19725476	19725476	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cctgctaccccactctctttCctcttcttctttttcttcct	1	18	5	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	16	19725476	19725476	C	A	SNP	C16orf88	ENST00000567367	human	ensembl	69_37n	-1	novel	nonsense	c.424	p.E142*	0.007	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C16orf88	HGNC	ENSG00000103550	92	0	0	58	16	21.62	-	-	-	A	19725476	C	A	19725476	4	1	249	1	0	0	0	0	0	1	0	0	1854	854	30	2	510	2	C16orf88	16	19725476	Nonsense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	7789875	19725476	70629277	27	23611										
C16orf88	0	genome.wustl.edu	37	chr16	19725691	19725691	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ggagtggcctgggagggcatCtccctcctggtggatttttt	15	9	1	0			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	16	19725691	19725691	C	G	SNP	C16orf88	ENST00000219837	human	ensembl	69_37n	-1	known	missense	c.667	p.D223H	0.949	NULL	NULL	-	no_errors	C16orf88	HGNC	ENSG00000103550	95	0	0	76	27	26.21	-	-	-	G	19725691	C	G	19725691	3	3	249	1	0	0	0	0	1	0	0	0	1854	913	32	2	725	2	C16orf88	16	19725691	Missense_Mutation	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	215	19725691	70629062	28	23612										
MON1B	0	genome.wustl.edu	37	chr16	77228812	77228812	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	atgcctgtctgcctgctgctGcttggcacccaacgtgaagc	11	14	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	16	77228812	77228812	G	T	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	silent	c.1056	p.L352	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	188	0	0	55	27	32.93	-	-	-	T	77228812	G	T	77228812	2	4	249	1	0	0	0	0	0	0	0	1	9771	1306	46	4		4	MON1B	16	77228812	Silent	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	57503121	77228812	13125941	29	23613										
TNFAIP1	0	genome.wustl.edu	37	chr17	26671409	26671409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ggtggaattcccagaggcccGaatctatgaggagacactca	12	10	2	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	17	26671409	26671409	G	A	SNP	TNFAIP1	ENST00000226225	human	ensembl	69_37n	1	known	missense	c.734	p.R245Q	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079	64	0	0	50	26	34.21	-	-	-	A	26671409	G	A	26671409	3	1	249	1	0	0	0	0	1	0	0	0	16367	1058	37	1	756	1	TNFAIP1	17	26671409	Missense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09		26671409	54523801	30	23614										
FASN	0	genome.wustl.edu	37	chr17	80037356	80037358	+	In_Frame_Del	DEL	GTA	GTA	-													0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tgctcagcggcacgcagcttGtagtagaaggaccgggccgc							TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	GTA	GTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	17	80037356	80037358	GTA	-	DEL	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	in_frame_del	c.7275_7273	p.Y2425in_frame_del	1.000:1.000:0.992	pfam_Thioesterase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	48	0	0	58	8	11.94	-	-	-	-	80037358	GTA	-	80037356	7	5	249	1	0	1	0	1	0	0	0	0	5729	1372	48	0	268	0	FASN	17	80037356	In_Frame_Del	DEL	GTA	TCGA-AC-A2FM-01A-11D-A19Y-09	53365947	80037356	1157854	31	23615										
TMX3	0	genome.wustl.edu	37	chr18	66354964	66354964	+	Frame_Shift_Del	DEL	C	C	-													0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	aaggtaattctgaaacctttCcctgttgatccatgatgaca							TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	18	66354964	66354964	C	-	DEL	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	frame_shift_del	c.676	p.E226fs	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	40	0	0	9	2	18.18	-	-	-	-	66354964	C	-	66354964	7	5	249	1	0	1	0	1	0	0	0	0	16363	864	30	0	716	0	TMX3	18	66354964	Frame_Shift_Del	DEL	C	TCGA-AC-A2FM-01A-11D-A19Y-09		66354964	11722284	32	23616										
TPRX1	0	genome.wustl.edu	37	chr19	48305694	48305694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tgggcctgggatcgggcctgAgattgggcctgggatcgggc	20	9	0	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	19	48305694	48305694	A	G	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.865	p.S289P	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	147	0	0	70	23	24.73	-	-	-	G	48305694	A	G	48305694	3	3	249	1	0	0	0	0	1	0	0	0	16518	304	11	5	665	5	TPRX1	19	48305694	Missense_Mutation	SNP	A	TCGA-AC-A2FM-01A-11D-A19Y-09		48305694	10823289	33	23617										
TTYH1	0	genome.wustl.edu	37	chr19	54930683	54930683	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	atggatggagaaagtgaggcTctggagaggaagtgaatcaa	16	3	2	4			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	19	54930683	54930683	T	C	SNP	TTYH1	ENST00000462769	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TTYH1	HGNC	ENSG00000167614	37	0	0	15	32	68.09	-	-	-	C	54930683	T	C	54930683	1	2	249	0	1	0	0	0	0	0	0	0	16836	1566	54	5		5	TTYH1	19	54930683	RNA	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09	6624989	54930683	4198300	34	23618										
NLRP7	0	genome.wustl.edu	37	chr19	55452900	55452900	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	atccaattttctgaggaggtGttgaccagaatttctgccag	10	8	2	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	19	55452900	55452900	G	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.264	p.N88K	0.001	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	76	0	0	44	16	26.67	-	-	-	C	55452900	G	C	55452900	3	2	249	1	0	0	0	0	1	0	0	0	10554	1368	48	4	2973	4	NLRP7	19	55452900	Missense_Mutation	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	522217	55452900	3676083	35	23619										
GNAS	0	genome.wustl.edu	37	chr20	57431261	57431262	+	RNA	DEL	AC	AC	-													0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	ctttacagttgaaaaaccagAcacacaggtatctggggcgc							TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	20	57431261	57431262	AC	-	DEL	GNAS	ENST00000481768	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999:0.995	-	-	-	no_errors	GNAS	HGNC	ENSG00000087460	60	0	0	41	8	16.33	-	-	-	-	57431262	AC	-	57431261	6	5	249	0	1	1	0	1	0	0	0	0	6562	290	10	0		0	GNAS	20	57431261	RNA	DEL	AC	TCGA-AC-A2FM-01A-11D-A19Y-09		57431261	5594259	36	23620										
BCR	0	genome.wustl.edu	37	chr22	23652503	23652503	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	aggactgtgccccttctcccTactgtagatcgaagtaaagc	9	12	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	22	23652503	23652503	T	C	SNP	BCR	ENST00000419722	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	65	0	0	10	7	41.18	-	-	-	C	23652503	T	C	23652503	1	2	249	0	1	0	0	0	0	0	0	0	1392	1537	53	5		5	BCR	22	23652503	RNA	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09		23652503	27652063	37	23621										
GAL3ST1	0	genome.wustl.edu	37	chr22	30951295	30951295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cgttgaagtggcggtagaggTgggagtccagcatgttccag	17	7	0	2			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	22	30951295	30951295	T	G	SNP	GAL3ST1	ENST00000338911	human	ensembl	69_37n	-1	known	missense	c.917	p.H306P	0.539	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242	78	0	0	20	11	35.48	-	-	-	G	30951295	T	G	30951295	3	3	249	1	0	0	0	0	1	0	0	0	6247	1696	59	5	358	5	GAL3ST1	22	30951295	Missense_Mutation	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09	7298792	30951295	20353271	38	23622										
USP9X	0	genome.wustl.edu	37	chrX	41073963	41073963	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	gtgaaaaatgcaataaaaagGtacgggctgtccagttttgt	11	5	0	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	X	41073963	41073963	G	A	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	splice_site	c.5331+1	e33+1	1.000	-	-	-	no_errors	USP9X	HGNC	ENSG00000124486	73	0	0	47	25	34.72	-	-	-	A	41073963	G	A	41073963	5	1	249	1	0	0	0	0	0	0	1	0	17187	1275	44	4	5462	4	USP9X	23	41073963	Splice_Site	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09		41073963	114196597	39	23623										
ATRX	0	genome.wustl.edu	37	chrX	76762869	76762869	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	atggttctgccattttgatgTtgtttataaaacagggtgtg	11	4	1	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	X	76762869	76762869	T	C	SNP	ATRX	ENST00000480283	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.848	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	50	0	0	41	8	16.33	-	-	-	C	76762869	T	C	76762869	1	2	249	0	1	0	0	0	0	0	0	0	1212	1740	60	5		5	ATRX	23	76762869	RNA	SNP	T	TCGA-AC-A2FM-01A-11D-A19Y-09	35688906	76762869	78507691	40	23624										
SATL1	0	genome.wustl.edu	37	chrX	84362457	84362457	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	tggctcctgcctggttgactCaggcctggttggctcagcac	13	13	2	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	X	84362457	84362457	C	A	SNP	SATL1	ENST00000509231	human	ensembl	69_37n	-1	known	silent	c.1518	p.L506	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	126	0	0	99	11	10	-	-	-	A	84362457	C	A	84362457	2	1	249	1	0	0	0	0	0	0	0	1	13942	813	29	2		2	SATL1	23	84362457	Silent	SNP	C	TCGA-AC-A2FM-01A-11D-A19Y-09	7599588	84362457	70908103	41	23625										
SLC9A6	0	genome.wustl.edu	37	chrX	135126844	135126844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	atggatgattctgaacccccGctaaatttgttagataatac	7	8	1	3			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	X	135126844	135126844	G	A	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	silent	c.2067	p.P689	0.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	74	0	0	53	28	34.57	-	-	-	A	135126844	G	A	135126844	2	1	249	1	0	0	0	0	0	0	0	1	14807	1074	38	1		1	SLC9A6	23	135126844	Silent	SNP	G	TCGA-AC-A2FM-01A-11D-A19Y-09	50764387	135126844	20143716	42	23626										
ATP11C	0	genome.wustl.edu	37	chrX	138864799	138864799	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.507788161993769	2.53894080996885	0	1	1	0	cttctctgtcttgtaaggccAtttttgcctctatgagctgt	8	10	3	1			TCGA-AC-A2FM-01A-11D-A19Y-09	TCGA-AC-A2FM-11B-32D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5da0b13-36d4-450f-91ad-28aec80cd486	15e2debd-3063-47bd-89ba-db738a9c0b45	X	138864799	138864799	A	G	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.1868	p.M623T	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	123	0	0	66	33	33.33	-	-	-	G	138864799	A	G	138864799	3	3	249	1	0	0	0	0	1	0	0	0	1125	217	8	5	1645	5	ATP11C	23	138864799	Missense_Mutation	SNP	A	TCGA-AC-A2FM-01A-11D-A19Y-09	3737955	138864799	16405761	43	23627										
NUDC	0	genome.wustl.edu	37	chr1	27268243	27268243	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ctgctgtgctctttgccccaGaaaaaggatgcagagaatca	10	10	2	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	1	27268243	27268243	G	A	SNP	NUDC	ENST00000321265	human	ensembl	69_37n	1	known	splice_site	c.364-1	e4-1	0.994	-	-	-	no_errors	NUDC	HGNC	ENSG00000090273	40	0	0	46	9	16.36	-	-	-	A	27268243	G	A	27268243	5	1	250	1	0	0	0	0	0	0	1	0	10794	956	33	2	377	2	NUDC	1	27268243	Splice_Site	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		27268243	221982378	1	23628										
LYST	0	genome.wustl.edu	37	chr1	235922292	235922292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ctgtgagcacttgcagttcgGttgtaatttggctcataacc	10	9	1	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	1	235922292	235922292	G	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.6861	p.N2287K	0.010	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	53	0	0	31	4	11.43	-	-	-	T	235922292	G	T	235922292	3	4	250	1	0	0	0	0	1	0	0	0	9195	1252	44	4	4668	4	LYST	1	235922292	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	208654049	235922292	13328329	2	23629										
C2orf71	0	genome.wustl.edu	37	chr2	29295823	29295823	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ttttctgggcttgtactggaGaggcatgggctccttgcttc	13	9	1	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	2	29295823	29295823	G	A	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.1305	p.L435	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	70	0	0	59	16	21.33	-	-	-	A	29295823	G	A	29295823	2	1	250	1	0	0	0	0	0	0	0	1	2211	929	33	2		2	C2orf71	2	29295823	Silent	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		29295823	213903550	3	23630										
CCDC74B	0	genome.wustl.edu	37	chr2	130900651	130900651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gggcttcctgagagcagcacGtgctgtgcttggctgcgtaa	15	10	0	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	2	130900651	130900651	G	A	SNP	CCDC74B	ENST00000409234	human	ensembl	69_37n	-1	putative	silent	c.486	p.H162	0.000	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	15	0	0	9	4	30.77	-	-	-	A	130900651	G	A	130900651	2	1	250	1	0	0	0	0	0	0	0	1	2875	1160	40	1		1	CCDC74B	2	130900651	Silent	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	101604828	130900651	112298722	4	23631										
FAM171B	0	genome.wustl.edu	37	chr2	187608252	187608252	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	actgttcccgcaaagccaagCaaatatatggctatttgaag	8	9	0	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	2	187608252	187608252	C	G	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.515	p.A172G	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	90	0	0	70	14	16.67	-	-	-	G	187608252	C	G	187608252	3	3	250	1	0	0	0	0	1	0	0	0	5531	710	25	4	525	4	FAM171B	2	187608252	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09	56707601	187608252	55591121	5	23632										
RPE	0	genome.wustl.edu	37	chr2	210881290	210881290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ttggcaccatgggctaatcaGatagatatggccttggttat	11	7	1	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	2	210881290	210881290	G	A	SNP	RPE	ENST00000359429	human	ensembl	69_37n	1	known	silent	c.402	p.Q134	0.994	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713	116	0	0	128	30	18.99	-	-	-	A	210881290	G	A	210881290	2	1	250	1	0	0	0	0	0	0	0	1	13630	933	33	2		2	RPE	2	210881290	Silent	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	23273038	210881290	32318083	6	23633										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0	40	15	27.27	-	-	-	A	178936091	G	A	178936091	3	1	250	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		178936091	19086339	7	23634										
PCDHA3	0	genome.wustl.edu	37	chr5	140180891	140180891	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	agctccactactccgtctctGaggaggccaagcatggcacc	10	15	1	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	5	140180891	140180891	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.109	p.E37K	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	53	0	0	62	8	11.43	-	-	-	A	140180891	G	A	140180891	3	1	250	1	0	0	0	0	1	0	0	0	11598	1291	45	2	111	2	PCDHA3	5	140180891	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		140180891	40734369	8	23635										
NMUR2	0	genome.wustl.edu	37	chr5	151771792	151771792	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	agctttgatagtttgttcttGacatctgttcactagagagg	10	6	3	3			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	5	151771792	151771792	G	T	SNP	NMUR2	ENST00000255262	human	ensembl	69_37n	-1	known	nonsense	c.1208	p.S403*	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911	158	0	0	118	26	18.06	-	-	-	T	151771792	G	T	151771792	4	4	250	1	0	0	0	0	0	1	0	0	10579	1294	45	2	43	2	NMUR2	5	151771792	Nonsense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	11590901	151771792	29143468	9	23636										
RDBP	0	genome.wustl.edu	37	chr6	31922433	31922433	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	cccgatccctgtcccgctctCtgtctctgtctcgatcccgg	8	19	3	0			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	6	31922433	31922433	C	T	SNP	RDBP	ENST00000375429	human	ensembl	69_37n	-1	known	missense	c.641	p.R214K	0.742	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RDBP	HGNC	ENSG00000204356	75	0	0	63	9	12.5	-	-	-	T	31922433	C	T	31922433	3	4	250	1	0	0	0	0	1	0	0	0	13271	913	32	2	521	2	RDBP	6	31922433	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09		31922433	139192634	10	23637										
MAP3K5	0	genome.wustl.edu	37	chr6	137019707	137019707	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	atgggtccaagaagcagctcGaagttcggttgcatgagctc	13	9	0	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	6	137019707	137019707	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	silent	c.726	p.F242	0.902	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	90	0	0	49	15	23.44	-	-	-	A	137019707	G	A	137019707	2	1	250	1	0	0	0	0	0	0	0	1	9324	1049	37	1		1	MAP3K5	6	137019707	Silent	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	105097274	137019707	34095360	11	23638										
AHCYL2	0	genome.wustl.edu	37	chr7	129064781	129064781	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	tctcaatcactgctactactCaggtaaggcttccagagtgg	9	11	3	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	7	129064781	129064781	C	T	SNP	AHCYL2	ENST00000325006	human	ensembl	69_37n	1	known	nonsense	c.1627	p.Q543*	1.000	pfam_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467	93	0	0	84	19	18.45	-	-	-	T	129064781	C	T	129064781	4	4	250	1	0	0	0	0	0	1	0	0	411	827	29	2	1803	2	AHCYL2	7	129064781	Nonsense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09		129064781	30073882	12	23639										
CC2D2B	0	genome.wustl.edu	37	chr10	97772336	97772336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	agagcacagatttttaaaaaGaattgtaaggcaatgtttcc	8	5	0	3			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	10	97772336	97772336	G	C	SNP	CC2D2B	ENST00000451649	human	ensembl	69_37n	1	known	missense	c.168	p.K56N	0.447	NULL	NULL	-	no_errors	CC2D2B	HGNC	ENSG00000188649	81	0	0	71	11	13.41	-	-	-	C	97772336	G	C	97772336	3	2	250	1	0	0	0	0	1	0	0	0	2754	933	33	2	178	2	CC2D2B	10	97772336	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		97772336	37762411	13	23640										
SBF2	0	genome.wustl.edu	37	chr11	10011089	10011089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	tccctgacatgctttatcatCttcactgggttattttcttc	5	11	4	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	11	10011089	10011089	C	G	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.1350	p.K450N	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	208	0	0	129	19	12.84	-	-	-	G	10011089	C	G	10011089	3	3	250	1	0	0	0	0	1	0	0	0	13946	912	32	2	4311	2	SBF2	11	10011089	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09		10011089	124995427	14	23641										
PSMA1	0	genome.wustl.edu	37	chr11	14535994	14535994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	agacacaggcagtggtctatCgaatacaaatctggaatcca	9	9	2	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	11	14535994	14535994	C	T	SNP	PSMA1	ENST00000418988	human	ensembl	69_37n	-1	known	missense	c.316	p.D106N	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA1	HGNC	ENSG00000129084	39	0	0	31	9	22.5	-	-	-	T	14535994	C	T	14535994	3	4	250	1	0	0	0	0	1	0	0	0	12746	884	31	1	567	1	PSMA1	11	14535994	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09	4524905	14535994	120470522	15	23642										
MUS81	0	genome.wustl.edu	37	chr11	65632261	65632261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	cgcctacctggccctcttgaCgcggggcctgcagagactct	12	16	2	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	11	65632261	65632261	C	T	SNP	MUS81	ENST00000308110	human	ensembl	69_37n	1	known	missense	c.1247	p.T416M	0.998	superfamily_Restrct_endonuc-II-like	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732	57	0	0	39	13	25	-	-	-	T	65632261	C	T	65632261	3	4	250	1	0	0	0	0	1	0	0	0	10060	536	19	1	1293	1	MUS81	11	65632261	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09	51096267	65632261	69374255	16	23643										
HCFC2	0	genome.wustl.edu	37	chr12	104458502	104458502	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gctgcacgtctacaacacggGtaggcgcggcggcggctcgt	16	13	1	0			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	12	104458502	104458502	G	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	splice_site	c.163+1	e1+1	1.000	-	-	-	no_errors	HCFC2	HGNC	ENSG00000111727	20	0	0	9	4	30.77	-	-	-	A	104458502	G	A	104458502	5	1	250	1	0	0	0	0	0	0	1	0	7044	1275	44	4	166	4	HCFC2	12	104458502	Splice_Site	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		104458502	29393393	17	23644										
NOC4L	0	genome.wustl.edu	37	chr12	132631861	132631861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gcactcctgaagttcgtgcaGctggaaggagcgcaccccct	12	14	0	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	12	132631861	132631861	G	T	SNP	NOC4L	ENST00000330579	human	ensembl	69_37n	1	known	missense	c.381	p.Q127H	0.999	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	NOC4L	HGNC	ENSG00000184967	25	0	0	14	3	17.65	-	-	-	T	132631861	G	T	132631861	3	4	250	1	0	0	0	0	1	0	0	0	10587	962	34	4	395	4	NOC4L	12	132631861	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09	28173359	132631861	1220034	18	23645										
BAZ1A	0	genome.wustl.edu	37	chr14	35242895	35242895	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ttaacagctcataccgtccaCtttctaatgctgatctccag	5	13	3	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	14	35242895	35242895	C	G	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.3035	p.S1012T	0.675	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	162	0	0	153	22	12.57	-	-	-	G	35242895	C	G	35242895	3	3	250	1	0	0	0	0	1	0	0	0	1333	565	20	4	1667	4	BAZ1A	14	35242895	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09		35242895	72106645	19	23646										
RNPS1	0	genome.wustl.edu	37	chr16	2314298	2314298	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gcgatccttggacttctcatCtgagcggtctttgcgtttgg	12	10	3	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	16	2314298	2314298	C	A	SNP	RNPS1	ENST00000301730	human	ensembl	69_37n	-1	known	missense	c.106	p.D36Y	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPS1	HGNC	ENSG00000205937	114	0	0	110	16	12.7	-	-	-	A	2314298	C	A	2314298	3	1	250	1	0	0	0	0	1	0	0	0	13597	913	32	2	835	2	RNPS1	16	2314298	Missense_Mutation	SNP	C	TCGA-AC-A2FO-01A-11D-A17W-09		2314298	88040455	20	23647										
CDH1	0	genome.wustl.edu	37	chr16	68867222	68867223	+	Frame_Shift_Ins	INS	-	-	G													0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	cggctgatactgaccccacaINSgccccgccttatgattctct							TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	16	68867222	68867223	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2469_2470	p.A823fs	0.000:1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	70	0	0	41	13	24.07	-	-	-	G	68867223	-	G	68867222	7	5	250	1	0	1	1	0	0	0	0	0	3124	175	7	0	2531	0	CDH1	16	68867222	Frame_Shift_Ins	INS	-	TCGA-AC-A2FO-01A-11D-A17W-09	66552924	68867222	21487531	21	23648										
DNAH9	0	genome.wustl.edu	37	chr17	11726261	11726261	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gagttcatcagactctaccaGagcttgttgcacaggcacag	10	11	3	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	17	11726261	11726261	G	C	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.9156	p.Q3052H	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	53	0	0	43	11	20.37	-	-	-	C	11726261	G	C	11726261	3	2	250	1	0	0	0	0	1	0	0	0	4643	933	33	2	9346	2	DNAH9	17	11726261	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		11726261	69468949	22	23649										
FBN3	0	genome.wustl.edu	37	chr19	8152088	8152088	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	tgctgaccatctgcacactcGtccacatcttcggatgacca	7	15	2	2			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	19	8152088	8152088	G	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.6627	p.D2209E	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	25	0	0	12	3	20	-	-	-	T	8152088	G	T	8152088	3	4	250	1	0	0	0	0	1	0	0	0	5750	1136	40	3	1846	3	FBN3	19	8152088	Missense_Mutation	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		8152088	50976895	23	23650										
PRDM15	0	genome.wustl.edu	37	chr21	43223022	43223023	+	Frame_Shift_Ins	INS	-	-	T													0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	gctttctcttgtgacttcgcINSttggcagctttcccgtgctt							TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	21	43223022	43223023	-	T	INS	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3891_3890	p.R1298fs	0.837:0.945	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	46	0	0	46	16	25.81	-	-	-	T	43223023	-	T	43223022	7	5	250	1	0	1	1	0	0	0	0	0	12537	796	28	0	640	0	PRDM15	21	43223022	Frame_Shift_Ins	INS	-	TCGA-AC-A2FO-01A-11D-A17W-09		43223022	4906873	24	23651										
MICALL1	0	genome.wustl.edu	37	chr22	38333086	38333086	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.44	11	0.000178750160444125	3.98048048048048	3.90810810810811	4.00831600831601	0.110701305693902	0.555209625480185	8	ctaacttttctccctgggcaGaaaaggactggacggaggag	13	9	1	1			TCGA-AC-A2FO-01A-11D-A17W-09	TCGA-AC-A2FO-11A-12D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	588bf255-b3bd-4247-9d39-9c1172260e5e	a62dd4a6-868e-44fd-a9ae-ff8140550aaa	22	38333086	38333086	G	A	SNP	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	splice_site	c.2309-1	e14-1	1.000	-	-	-	no_errors	MICALL1	HGNC	ENSG00000100139	52	0	0	41	8	16.33	-	-	-	A	38333086	G	A	38333086	5	1	250	1	0	0	0	0	0	0	1	0	9644	956	33	2	2362	2	MICALL1	22	38333086	Splice_Site	SNP	G	TCGA-AC-A2FO-01A-11D-A17W-09		38333086	12971480	25	23652										
CSRNP3	0	genome.wustl.edu	37	chr2	166532860	166532860	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gtagaatcagaagaagccagCactcttacactggatgacat	9	9	2	4			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	166532860	166532860	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	silent	c.447	p.S149	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	17	0	0	7	7	50	-	-	-	T	166532860	C	T	166532860	2	4	251	1	0	0	0	0	0	0	0	1	3997	709	25	4		4	CSRNP3	2	166532860	Silent	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09		166532860	76666513	1	23653										
MYO3B	0	genome.wustl.edu	37	chr2	171376010	171376010	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	aatccaacaatggccgtacaCagacttcaagcaactctcct	5	14	2	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	171376010	171376010	C	G	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	missense	c.3562	p.Q1188E	0.020	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	26	0	0	17	7	29.17	-	-	-	G	171376010	C	G	171376010	3	3	251	1	0	0	0	0	1	0	0	0	10149	479	17	4	3653	4	MYO3B	2	171376010	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09	4843150	171376010	71823363	2	23654										
BRPF1	0	genome.wustl.edu	37	chr3	9781112	9781113	+	Frame_Shift_Del	DEL	AG	AG	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ggcggtgccttcaagcagacAgatgacgggcgctgggccca							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	9781112	9781113	AG	-	DEL	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	frame_shift_del	c.1029_1030	p.D344fs	0.841:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	37	0	0	18	6	25	-	-	-	-	9781113	AG	-	9781112	7	5	251	1	0	1	0	1	0	0	0	0	1528	175	7	0	1035	0	BRPF1	3	9781112	Frame_Shift_Del	DEL	AG	TCGA-AC-A2QH-01A-11D-A18P-09		9781112	188241318	3	23655										
RAD50	0	genome.wustl.edu	37	chr5	131911476	131911478	+	In_Frame_Del	DEL	AAG	AAG	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttttccttcaaaggttgctcAagaaacagatgtgagagccc							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	5	131911476	131911478	AAG	-	DEL	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	in_frame_del	c.221_223	p.E75in_frame_del	1.000:0.954:1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	66	0	0	25	15	37.5	-	-	-	-	131911478	AAG	-	131911476	7	5	251	1	0	1	0	1	0	0	0	0	13067	130	5	0	231	0	RAD50	5	131911476	In_Frame_Del	DEL	AAG	TCGA-AC-A2QH-01A-11D-A18P-09		131911476	49003784	4	23656										
HECW1	0	genome.wustl.edu	37	chr7	43436434	43436434	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	tttttaaaagcattggtgctGatgagaccgtccaaggacaa	10	7	0	2			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	43436434	43436434	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.577	p.D193N	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	83	0	0	71	12	14.29	-	-	-	A	43436434	G	A	43436434	3	1	251	1	0	0	0	0	1	0	0	0	7093	1290	45	2	595	2	HECW1	7	43436434	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09		43436434	115702229	5	23657										
LMTK2	0	genome.wustl.edu	37	chr7	97833398	97833398	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gcccggagcacggagcagagCtggccgcactcggcgcctta	15	15	0	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	97833398	97833398	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.4383	p.S1461R	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	52	0	0	42	13	23.64	-	-	-	G	97833398	C	G	97833398	3	3	251	1	0	0	0	0	1	0	0	0	8915	796	28	4	4433	4	LMTK2	7	97833398	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09	54396964	97833398	61305265	6	23658										
SERPINE1	0	genome.wustl.edu	37	chr7	100773701	100773701	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ctcctctctgtcccggtgcaGacaagggcatggcccccgcc	11	18	1	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100773701	100773701	G	C	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	splice_site	c.272-1	e2-1	1.000	-	-	-	no_errors	SERPINE1	HGNC	ENSG00000106366	33	0	0	2	10	83.33	-	-	-	C	100773701	G	C	100773701	5	2	251	1	0	0	0	0	0	0	1	0	14199	956	33	2	277	2	SERPINE1	7	100773701	Splice_Site	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09	2940303	100773701	58364962	7	23659										
CNTNAP3	0	genome.wustl.edu	37	chr9	39085796	39085796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	tgtccctgaggacaagatgaCttgtttctttgtgctctggt	11	8	2	3			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	39085796	39085796	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.3379	p.V1127I	0.994	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	87	0	0	31	16	34.04	-	-	-	T	39085796	C	T	39085796	3	4	251	1	0	0	0	0	1	0	0	0	3678	565	20	4	503	4	CNTNAP3	9	39085796	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09		39085796	102127635	8	23660										
JMJD1C	0	genome.wustl.edu	37	chr10	64957271	64957271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttaaacaatgttgcttcacaTgcatcacacatctcccggac	5	13	3	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	64957271	64957271	T	G	SNP	JMJD1C	ENST00000327520	human	ensembl	69_37n	-1	novel	missense	c.1184	p.H395P	0.897	NULL	pfscan_JmjC_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	JMJD1C	HGNC	ENSG00000171988	63	0	0	48	11	18.64	-	-	-	G	64957271	T	G	64957271	3	3	251	1	0	0	0	0	1	0	0	0	8004	1451	51	5	2134	5	JMJD1C	10	64957271	Missense_Mutation	SNP	T	TCGA-AC-A2QH-01A-11D-A18P-09		64957271	70577476	9	23661										
DDX50	0	genome.wustl.edu	37	chr10	70679674	70679676	+	In_Frame_Del	DEL	TAT	TAT	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	agtgggtctgaagggagggcTattattttctgtgagaccaa							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	TAT	TAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	70679674	70679676	TAT	-	DEL	DDX50	ENST00000373585	human	ensembl	69_37n	1	known	in_frame_del	c.1176_1178	p.I394in_frame_del	1.000:1.000:1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	58	0	0	28	4	12.5	-	-	-	-	70679676	TAT	-	70679674	7	5	251	1	0	1	0	1	0	0	0	0	4399	1509	53	0	1206	0	DDX50	10	70679674	In_Frame_Del	DEL	TAT	TCGA-AC-A2QH-01A-11D-A18P-09	5722403	70679674	64855073	10	23662										
CNNM2	0	genome.wustl.edu	37	chr10	104679434	104679434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gtcagcaagctgctggactgCgtcctgggccaggagatagg	16	10	1	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	104679434	104679434	C	T	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	silent	c.1197	p.C399	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	47	0	0	12	8	40	-	-	-	T	104679434	C	T	104679434	2	4	251	1	0	0	0	0	0	0	0	1	3643	776	27	1		1	CNNM2	10	104679434	Silent	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09	33999760	104679434	30855313	11	23663										
STRAP	0	genome.wustl.edu	37	chr12	16050834	16050834	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	agtttggacccaattaaatcCtttgaagctcctgcaaccat	6	11	0	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	16050834	16050834	C	A	SNP	STRAP	ENST00000025399	human	ensembl	69_37n	1	known	silent	c.696	p.S232	0.380	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	36	0	0	26	23	46.94	-	-	-	A	16050834	C	A	16050834	2	1	251	1	0	0	0	0	0	0	0	1	15417	668	24	4		4	STRAP	12	16050834	Silent	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09		16050834	117801061	12	23664										
PPFIBP1	0	genome.wustl.edu	37	chr12	27841969	27841969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttctagagcctcgttttaacGtagaaacaatggctcagtta	8	8	2	2			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	27841969	27841969	G	A	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	missense	c.2536	p.V846I	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	39	0	0	24	15	38.46	-	-	-	A	27841969	G	A	27841969	3	1	251	1	0	0	0	0	1	0	0	0	12386	1145	40	1	2658	1	PPFIBP1	12	27841969	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09	11791135	27841969	106009926	13	23665										
HSP90B1	0	genome.wustl.edu	37	chr12	104332121	104332121	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttctcttatttcaacagactGaaactgttgaggagcccatg	8	9	2	3			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	104332121	104332121	G	T	SNP	HSP90B1	ENST00000299767	human	ensembl	69_37n	1	known	nonsense	c.859	p.E287*	0.987	pirsf_Hsp90,pfam_Hsp90,superfamily_ATPase-like_ATP-bd	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598	50	0	0	16	4	20	-	-	-	T	104332121	G	T	104332121	4	4	251	1	0	0	0	0	0	1	0	0	7456	1291	45	2	885	2	HSP90B1	12	104332121	Nonsense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09	76490152	104332121	29519774	14	23666										
ZCCHC8	0	genome.wustl.edu	37	chr12	122966110	122966110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gccccgaattctccaattcaGcctctttgagccaccctggt	7	16	3	1			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	122966110	122966110	G	T	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.977	p.A326D	1.000	pfam_PSP,smart_PSP	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	52	0	0	36	4	10	-	-	-	T	122966110	G	T	122966110	3	4	251	1	0	0	0	0	1	0	0	0	17690	971	34	4	1166	4	ZCCHC8	12	122966110	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09	18633989	122966110	10885785	15	23667										
DMXL2	0	genome.wustl.edu	37	chr15	51766573	51766575	+	In_Frame_Del	DEL	ACA	ACA	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ctgattgtcttcgaggtttcAcaacaagttttacaccgcct							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	15	51766573	51766575	ACA	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	in_frame_del	c.7181_7179	p.V2394in_frame_del	1.000:1.000:0.993	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	29	0	0	17	3	15	-	-	-	-	51766575	ACA	-	51766573	7	5	251	1	0	1	0	1	0	0	0	0	4631	159	6	0	1996	0	DMXL2	15	51766573	In_Frame_Del	DEL	ACA	TCGA-AC-A2QH-01A-11D-A18P-09		51766573	50764819	16	23668										
TP53	0	genome.wustl.edu	37	chr17	7577097	7577097	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ctcttcctctgtgcgccggtCtctcccaggacaggcacaaa	9	16	3	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	7577097	7577097	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.841	p.D281Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0	4	63	94.03	-	-	-	A	7577097	C	A	7577097	3	1	251	1	0	0	0	0	1	0	0	0	16477	913	32	2	445	2	TP53	17	7577097	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09		7577097	73618113	17	23669										
CSHL1	0	genome.wustl.edu	37	chr17	61988159	61988159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gtcaatggccagctggtgtgCgcgatgggcttggagcatag	17	8	1	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	61988159	61988159	C	T	SNP	CSHL1	ENST00000309894	human	ensembl	69_37n	-1	known	missense	c.136	p.A46T	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSHL1	HGNC	ENSG00000204414	61	0	0	37	8	17.78	-	-	-	T	61988159	C	T	61988159	3	4	251	1	0	0	0	0	1	0	0	0	3974	768	27	1	548	1	CSHL1	17	61988159	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09	54411062	61988159	19207051	18	23670										
NPC1	0	genome.wustl.edu	37	chr18	21119843	21119843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttgttgcagcccatgccgccGcacaccatgttctgcccctt	8	17	1	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	18	21119843	21119843	G	A	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.1805	p.A602V	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	47	0	0	14	7	33.33	-	-	-	A	21119843	G	A	21119843	3	1	251	1	0	0	0	0	1	0	0	0	10642	1079	38	1	1141	1	NPC1	18	21119843	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09		21119843	56957405	19	23671										
CARD8	0	genome.wustl.edu	37	chr19	48715046	48715046	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	tgaagagcacgtccagggccAggtcccctttcttctccacc	9	16	2	2			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	48715046	48715046	A	T	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.1535	p.L512Q	0.000	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	72	0	0	74	24	24.49	-	-	-	T	48715046	A	T	48715046	3	4	251	1	0	0	0	0	1	0	0	0	2676	188	7	5	82	5	CARD8	19	48715046	Missense_Mutation	SNP	A	TCGA-AC-A2QH-01A-11D-A18P-09		48715046	10413937	20	23672										
NR1H2	0	genome.wustl.edu	37	chr19	50881804	50881806	+	In_Frame_Del	DEL	GAA	GAA	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ctttctgaagaacagatccgGaagaagaagattcggaaaca							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	50881804	50881806	GAA	-	DEL	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	in_frame_del	c.498_500	p.K169in_frame_del	0.985:0.996:0.998	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	28	0	0	16	4	20	-	-	-	-	50881806	GAA	-	50881804	7	5	251	1	0	1	0	1	0	0	0	0	10690	1161	41	0	512	0	NR1H2	19	50881804	In_Frame_Del	DEL	GAA	TCGA-AC-A2QH-01A-11D-A18P-09	2166758	50881804	8247179	21	23673										
RALGAPB	0	genome.wustl.edu	37	chr20	37195849	37195852	+	Frame_Shift_Del	DEL	ACAG	ACAG	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttgagcttttccccaatcatAcagacaatcttaattcctca							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	20	37195849	37195852	ACAG	-	DEL	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	frame_shift_del	c.3928_3931	p.D1311fs	1.000:1.000:0.998:1.000	pfscan_Rap_GAP	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	47	0	0	45	16	26.23	-	-	-	-	37195852	ACAG	-	37195849	7	5	251	1	0	1	0	1	0	0	0	0	13098	391	14	0	4026	0	RALGAPB	20	37195849	Frame_Shift_Del	DEL	ACAG	TCGA-AC-A2QH-01A-11D-A18P-09		37195849	25829671	22	23674										
GGT5	0	genome.wustl.edu	37	chr22	24621545	24621545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	gtggtgccggaaccccggggGcatcgctcgcataagtccag	15	13	0	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	24621545	24621545	G	A	SNP	GGT5	ENST00000425408	human	ensembl	69_37n	-1	putative	missense	c.113	p.A38V	0.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GGT5	HGNC	ENSG00000099998	32	0	0	19	13	39.39	-	-	-	A	24621545	G	A	24621545	3	1	251	1	0	0	0	0	1	0	0	0	6414	1195	42	4	474	4	GGT5	22	24621545	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09		24621545	26683021	23	23675										
LIMK2	0	genome.wustl.edu	37	chr22	31655161	31655161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ttgcctgtatgagctgcaagGtgatcattgaggatggggat	15	5	1	3			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	31655161	31655161	G	A	SNP	LIMK2	ENST00000331728	human	ensembl	69_37n	1	known	missense	c.307	p.V103M	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	109	0	0	33	14	29.79	-	-	-	A	31655161	G	A	31655161	3	1	251	1	0	0	0	0	1	0	0	0	8857	1261	44	4	378	4	LIMK2	22	31655161	Missense_Mutation	SNP	G	TCGA-AC-A2QH-01A-11D-A18P-09	7033616	31655161	19649405	24	23676										
DDX26B	0	genome.wustl.edu	37	chrX	134680717	134680717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	ggttatttgccctggtgttgCgtttgcctggagtggcttct	14	8	1	0			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	134680717	134680717	C	T	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.520	p.R174C	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	108	0	0	31	47	60.26	-	-	-	T	134680717	C	T	134680717	3	4	251	1	0	0	0	0	1	0	0	0	4384	768	27	1	538	1	DDX26B	23	134680717	Missense_Mutation	SNP	C	TCGA-AC-A2QH-01A-11D-A18P-09		134680717	20589843	25	23677										
DKC1	0	genome.wustl.edu	37	chrX	153993226	153993228	+	In_Frame_Del	DEL	AGA	AGA	-													0.0769230769230769	2	0.838684625201534	1.2396449704142	2.68589743589744	0.805769230769231	1	1	0	aaggagcggaagtcattgccAgaagaagatgtagccgtgag							TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	153993226	153993228	AGA	-	DEL	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	in_frame_del	c.69_71	p.E25in_frame_del	0.070:0.944:0.966	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	147	0	0	85	12	12.24	-	-	-	-	153993228	AGA	-	153993226	7	5	251	1	0	1	0	1	0	0	0	0	4578	175	7	0	75	0	DKC1	23	153993226	In_Frame_Del	DEL	AGA	TCGA-AC-A2QH-01A-11D-A18P-09	19312509	153993226	1277334	26	23678										
USP48	0	genome.wustl.edu	37	chr1	22032270	22032270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	aatgtaaacatgaggcccccGtggggacacaaaagagcact	11	10	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	22032270	22032270	G	A	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	silent	c.2334	p.H778	0.852	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	50	0	0	36	8	18.18	-	-	-	A	22032270	G	A	22032270	2	1	252	1	0	0	0	0	0	0	0	1	17176	1136	40	1		1	USP48	1	22032270	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		22032270	227218351	1	23679										
ZC3H12A	0	genome.wustl.edu	37	chr1	37947372	37947372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cataccgtgacctccaaggcGagcggcaggagtggaagcgc	15	12	0	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	37947372	37947372	G	A	SNP	ZC3H12A	ENST00000373082	human	ensembl	69_37n	1	known	missense	c.754	p.E252K	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	46	0	0	35	11	23.91	-	-	-	A	37947372	G	A	37947372	3	1	252	1	0	0	0	0	1	0	0	0	17657	1059	37	1	764	1	ZC3H12A	1	37947372	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	15915102	37947372	211303249	2	23680										
DOCK7	0	genome.wustl.edu	37	chr1	63090858	63090858	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccatacatgtatagtacaatCactacctttctgaaattaaa	3	9	2	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	63090858	63090858	C	T	SNP	DOCK7	ENST00000464312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	29	0	0	29	4	12.12	-	-	-	T	63090858	C	T	63090858	1	4	252	0	1	0	0	0	0	0	0	0	4727	841	29	2		2	DOCK7	1	63090858	RNA	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	25143486	63090858	186159763	3	23681										
CD53	0	genome.wustl.edu	37	chr1	111441958	111441958	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gtccctgtcttatacaaccaGagaagtgggtgttggccagg	13	9	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	111441958	111441958	G	A	SNP	CD53	ENST00000476408	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CD53	HGNC	ENSG00000143119	18	0	0	17	4	19.05	-	-	-	A	111441958	G	A	111441958	1	1	252	0	1	0	0	0	0	0	0	0	3052	957	33	2		2	CD53	1	111441958	RNA	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	48351100	111441958	137808663	4	23682										
NBPF14	0	genome.wustl.edu	37	chr1	148009510	148009510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ttctcatccaacagctccccGctgagcctggaaaagtggga	10	13	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	148009510	148009510	G	A	SNP	NBPF14	ENST00000310701	human	ensembl	69_37n	-1	known	missense	c.1814	p.A605V	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF14	HGNC	ENSG00000122497	37	0	0	29	4	12.12	-	-	-	A	148009510	G	A	148009510	3	1	252	1	0	0	0	0	1	0	0	0	10266	1078	38	1	996	1	NBPF14	1	148009510	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	36567552	148009510	101241111	5	23683										
FDPS	0	genome.wustl.edu	37	chr1	155279482	155279482	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggggcactctgggctaaggcTggggtgggagttatctgggg	21	6	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	155279482	155279482	T	G	SNP	FDPS	ENST00000487002	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752	10	0	0	15	5	23.81	-	-	-	G	155279482	T	G	155279482	1	3	252	0	1	0	0	0	0	0	0	0	5849	1595	55	5		5	FDPS	1	155279482	RNA	SNP	T	TCGA-AC-A2QI-01A-12D-A19Y-09	7269972	155279482	93971139	6	23684										
FCRL5	0	genome.wustl.edu	37	chr1	157504500	157504500	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	atgtccttcagtcagagagaAgctgaaggacactcttccca	9	11	3	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	157504500	157504500	A	T	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1585	p.F529I	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	50	0	0	55	12	17.91	-	-	-	T	157504500	A	T	157504500	3	4	252	1	0	0	0	0	1	0	0	0	5844	72	3	5	1388	5	FCRL5	1	157504500	Missense_Mutation	SNP	A	TCGA-AC-A2QI-01A-12D-A19Y-09	2225018	157504500	91746121	7	23685										
BPNT1	0	genome.wustl.edu	37	chr1	220233117	220233117	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cataagcagaggctttgcctTcaatcagctgaataatctgt	8	9	3	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	220233117	220233117	T	C	SNP	BPNT1	ENST00000322067	human	ensembl	69_37n	-1	known	missense	c.689	p.E230G	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	BPNT1	HGNC	ENSG00000162813	39	0	0	44	10	18.52	-	-	-	C	220233117	T	C	220233117	3	2	252	1	0	0	0	0	1	0	0	0	1502	1783	62	5	245	5	BPNT1	1	220233117	Missense_Mutation	SNP	T	TCGA-AC-A2QI-01A-12D-A19Y-09	62728617	220233117	29017504	8	23686										
C1orf101	0	genome.wustl.edu	37	chr1	244724054	244724054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ttcttaagtttgccagattaGtaactaccacagaactgaaa	6	8	1	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	244724054	244724054	G	A	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1114	p.V372I	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	60	0	0	107	20	15.62	-	-	-	A	244724054	G	A	244724054	3	1	252	1	0	0	0	0	1	0	0	0	1995	1029	36	4	1152	4	C1orf101	1	244724054	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	24490937	244724054	4526567	9	23687										
KIDINS220	0	genome.wustl.edu	37	chr2	8943190	8943190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agtttacatttggattcctcTtcaaaatttcttttactgac	4	8	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	8943190	8943190	T	C	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.671	p.K224R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	73	0	0	51	8	13.56	-	-	-	C	8943190	T	C	8943190	3	2	252	1	0	0	0	0	1	0	0	0	8323	1609	56	5	4736	5	KIDINS220	2	8943190	Missense_Mutation	SNP	T	TCGA-AC-A2QI-01A-12D-A19Y-09		8943190	234256183	10	23688										
TTN	0	genome.wustl.edu	37	chr2	179569262	179569262	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	acagttagtttagcgctagcGatgtgtggaccacaaaccaa	10	9	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	179569262	179569262	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.26205	p.I8735	0.219	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	86	0	0	68	25	26.88	-	-	-	A	179569262	G	A	179569262	2	1	252	1	0	0	0	0	0	0	0	1	16832	1048	37	1		1	TTN	2	179569262	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	170626072	179569262	63630111	11	23689										
ITGA4	0	genome.wustl.edu	37	chr2	182399016	182399016	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	caggatgagacttcagcactCaagtttgaaataagagcaac	9	8	2	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	182399016	182399016	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	silent	c.2802	p.L934	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	54	0	0	34	11	24.44	-	-	-	T	182399016	C	T	182399016	2	4	252	1	0	0	0	0	0	0	0	1	7932	813	29	2		2	ITGA4	2	182399016	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	2829754	182399016	60800357	12	23690										
DYTN	0	genome.wustl.edu	37	chr2	207575268	207575268	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	actggcacagagtttgcactGattgtaatttgaaggctgtt	11	6	0	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	207575268	207575268	G	A	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	missense	c.74	p.S25L	0.979	pfam_EF-hand_dom_typ1	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	72	0	0	60	23	27.71	-	-	-	A	207575268	G	A	207575268	3	1	252	1	0	0	0	0	1	0	0	0	4896	1294	45	2	1706	2	DYTN	2	207575268	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	25176252	207575268	35624105	13	23691										
SP110	0	genome.wustl.edu	37	chr2	231042265	231042265	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ttataataccttcagcagctCtcctagggtcattccttcac	5	13	4	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	231042265	231042265	C	T	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.1579	p.E527K	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	107	1	0.93	94	24	20.34	-	-	-	T	231042265	C	T	231042265	3	4	252	1	0	0	0	0	1	0	0	0	15050	922	32	2	650	2	SP110	2	231042265	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	23466997	231042265	12157108	14	23692										
ZNF619	0	genome.wustl.edu	37	chr3	40529166	40529166	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	accgcagttcggtatttcttCagcaccagaggttccacact	8	13	2	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	40529166	40529166	C	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	nonsense	c.1285	p.Q429*	0.013	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	45	0	0	35	13	27.08	-	-	-	T	40529166	C	T	40529166	4	4	252	1	0	0	0	0	0	1	0	0	18139	827	29	2	1325	2	ZNF619	3	40529166	Nonsense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		40529166	157493264	15	23693										
USP4	0	genome.wustl.edu	37	chr3	49335319	49335319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tcacacgaaaatgtcatcccGaggcatgatgtggtttaaac	9	9	2	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	49335319	49335319	G	A	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.1675	p.R559W	0.986	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	94	0	0	65	17	20.73	-	-	-	A	49335319	G	A	49335319	3	1	252	1	0	0	0	0	1	0	0	0	17168	1057	37	1	1256	1	USP4	3	49335319	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	8806153	49335319	148687111	16	23694										
C3orf55	0	genome.wustl.edu	37	chr3	157261177	157261177	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cagcttttcttccctgatctCtcggaggcgccggctgctgg	12	14	2	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	157261177	157261177	C	T	SNP	C3orf55	ENST00000498159	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf55	HGNC	ENSG00000174899	25	0	0	30	10	25	-	-	-	T	157261177	C	T	157261177	1	4	252	0	1	0	0	0	0	0	0	0	2254	928	32	2		2	C3orf55	3	157261177	RNA	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	107925858	157261177	40761253	17	23695										
PIK3CA	0	genome.wustl.edu	37	chr3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tggagtatttcatgaaacaaAtgaatgatgcacatcatggt	9	5	2	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	178952072	178952072	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3127	p.M1043V	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	20	0	0	18	11	37.93	-	-	-	G	178952072	A	G	178952072	3	3	252	1	0	0	0	0	1	0	0	0	11987	101	4	5	3205	5	PIK3CA	3	178952072	Missense_Mutation	SNP	A	TCGA-AC-A2QI-01A-12D-A19Y-09	21690895	178952072	19070358	18	23696										
EIF2B5	0	genome.wustl.edu	37	chr3	183862720	183862720	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	aggcagaagaggagtcatctGaagatgactgaagtcacact	12	7	3	6			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	183862720	183862720	G	A	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	missense	c.2155	p.E719K	0.999	pfam_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	33	0	0	19	8	29.63	-	-	-	A	183862720	G	A	183862720	3	1	252	1	0	0	0	0	1	0	0	0	5039	1291	45	2	2217	2	EIF2B5	3	183862720	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	4910648	183862720	14159710	19	23697										
FBXW7	0	genome.wustl.edu	37	chr4	153332918	153332918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tcagagagcctccagttcgtCgtcttttgctgcccacagag	10	13	2	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	4	153332918	153332918	C	A	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.38	p.R13L	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	94	0	0	78	24	23.53	-	-	-	A	153332918	C	A	153332918	3	1	252	1	0	0	0	0	1	0	0	0	5815	884	31	3	2545	3	FBXW7	4	153332918	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		153332918	37821358	20	23698										
CAMK4	0	genome.wustl.edu	37	chr5	110820109	110820109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tcccagagaagggcaaggaaGctctgctgtgggttttgaag	15	7	1	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	5	110820109	110820109	G	T	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	1	known	missense	c.1367	p.S456I	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	38	0	0	30	4	11.76	-	-	-	T	110820109	G	T	110820109	3	4	252	1	0	0	0	0	1	0	0	0	2630	971	34	4	1409	4	CAMK4	5	110820109	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		110820109	70095151	21	23699										
TRERF1	0	genome.wustl.edu	37	chr6	42214210	42214210	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ttaccatcttctgtacaaaaAtaaagtctttgctgtaagtg	6	7	3	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	42214210	42214210	A	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	missense	c.2789	p.I930N	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	93	0	0	58	20	25.64	-	-	-	T	42214210	A	T	42214210	3	4	252	1	0	0	0	0	1	0	0	0	16571	101	4	5	893	5	TRERF1	6	42214210	Missense_Mutation	SNP	A	TCGA-AC-A2QI-01A-12D-A19Y-09		42214210	128900857	22	23700										
FAM184A	0	genome.wustl.edu	37	chr6	119345694	119345694	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gacatggtcactatgcgttgGacatgctgggcttctgcaca	12	10	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	119345694	119345694	G	A	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	silent	c.444	p.V148	0.612	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	42	0	0	37	9	19.57	-	-	-	A	119345694	G	A	119345694	2	1	252	1	0	0	0	0	0	0	0	1	5552	1161	41	2		2	FAM184A	6	119345694	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	77131484	119345694	51769373	23	23701										
PBOV1	0	genome.wustl.edu	37	chr6	138539212	138539212	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gttaactgcaaagtcaatgtGaataatatggcttctgaaga	9	5	2	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	138539212	138539212	G	A	SNP	PBOV1	ENST00000527246	human	ensembl	69_37n	-1	known	silent	c.321	p.F107	0.047	NULL	NULL	-	no_errors	PBOV1	HGNC	ENSG00000254440	89	0	0	74	17	18.68	-	-	-	A	138539212	G	A	138539212	2	1	252	1	0	0	0	0	0	0	0	1	11563	1281	45	2		2	PBOV1	6	138539212	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	19193518	138539212	32575855	24	23702										
AMPH	0	genome.wustl.edu	37	chr7	38424484	38424484	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggtggcaaggtctctgtactGaagccagtctgattccttca	11	10	3	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	38424484	38424484	G	A	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	nonsense	c.2023	p.Q675*	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin_1	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	39	0	0	34	8	19.05	-	-	-	A	38424484	G	A	38424484	4	1	252	1	0	0	0	0	0	1	0	0	588	1299	45	2	68	2	AMPH	7	38424484	Nonsense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		38424484	120714179	25	23703										
DNAJC30	0	genome.wustl.edu	37	chr7	73097257	73097257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cgtagtgggcctggtagaagGcgtcaaagttgaacatcgtg	15	7	1	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	73097257	73097257	G	T	SNP	DNAJC30	ENST00000395176	human	ensembl	69_37n	-1	known	missense	c.497	p.A166D	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC30	HGNC	ENSG00000176410	22	0	0	18	8	30.77	-	-	-	T	73097257	G	T	73097257	3	4	252	1	0	0	0	0	1	0	0	0	4683	1203	42	4	187	4	DNAJC30	7	73097257	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	34672773	73097257	86041406	26	23704										
DOCK4	0	genome.wustl.edu	37	chr7	111379194	111379194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	accctacaaggagtacctgcGaaggctccacaggtgttgga	12	11	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	111379194	111379194	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.5228	p.S1743L	0.994	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	73	0	0	35	13	27.08	-	-	-	A	111379194	G	A	111379194	3	1	252	1	0	0	0	0	1	0	0	0	4724	1059	37	1	719	1	DOCK4	7	111379194	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	38281937	111379194	47759469	27	23705										
MLL3	0	genome.wustl.edu	37	chr7	151846017	151846017	+	Frame_Shift_Del	DEL	T	T	-													0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggacagctcttagccgaggcTtcagcttgactgtcaccttc							TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	151846017	151846017	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.13166	p.K4389fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	32	0	0	26	9	25.71	-	-	-	-	151846017	T	-	151846017	7	5	252	1	0	1	0	1	0	0	0	0	9693	1609	56	0	1772	0	MLL3	7	151846017	Frame_Shift_Del	DEL	T	TCGA-AC-A2QI-01A-12D-A19Y-09	40466823	151846017	7292646	28	23706										
EBF2	0	genome.wustl.edu	37	chr8	25899697	25899697	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	atagagcgccaggacgaagtGaaagaagttggatttcctca	12	7	1	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	8	25899697	25899697	G	A	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.202	p.H68Y	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	72	0	0	47	10	17.54	-	-	-	A	25899697	G	A	25899697	3	1	252	1	0	0	0	0	1	0	0	0	4916	1290	45	2	1585	2	EBF2	8	25899697	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		25899697	120464325	29	23707										
NECAB1	0	genome.wustl.edu	37	chr8	91929752	91929752	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gcctccaatttggaacaattCgtaactagatttttattgaa	6	7	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	8	91929752	91929752	C	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	silent	c.390	p.F130	1.000	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	67	0	0	41	24	36.36	-	-	-	T	91929752	C	T	91929752	2	4	252	1	0	0	0	0	0	0	0	1	10376	883	31	1		1	NECAB1	8	91929752	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	66030055	91929752	54434270	30	23708										
DDX58	0	genome.wustl.edu	37	chr9	32466374	32466374	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tttgtacatgtttatttgttCtttttcaattacaccagcat	4	7	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	32466374	32466374	C	T	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	missense	c.2251	p.E751K	1.000	pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	139	0	0	101	16	13.68	-	-	-	T	32466374	C	T	32466374	3	4	252	1	0	0	0	0	1	0	0	0	4406	922	32	2	538	2	DDX58	9	32466374	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		32466374	108747057	31	23709										
RASEF	0	genome.wustl.edu	37	chr9	85615112	85615114	+	In_Frame_Del	DEL	TTC	TTC	-													0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gcgcttatattttctcgaaaTtcattcttgcaaagtctcat							TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	85615112	85615114	TTC	-	DEL	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	in_frame_del	c.1695_1693	p.E565in_frame_del	1.000:1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	43	0	0	23	3	11.54	-	-	-	-	85615114	TTC	-	85615112	7	5	252	1	0	1	0	1	0	0	0	0	13151	1490	52	0	551	0	RASEF	9	85615112	In_Frame_Del	DEL	TTC	TCGA-AC-A2QI-01A-12D-A19Y-09	53148738	85615112	55598319	32	23710										
GSN	0	genome.wustl.edu	37	chr9	124091358	124091358	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cgagttccacaggactggccGgcagcaggggcaggagaaac	16	11	0	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	124091358	124091358	G	A	SNP	GSN	ENST00000477553	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	33	0	0	22	5	18.52	-	-	-	A	124091358	G	A	124091358	1	1	252	0	1	0	0	0	0	0	0	0	6876	1131	39	1		1	GSN	9	124091358	RNA	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	38476246	124091358	17122073	33	23711										
MYO3A	0	genome.wustl.edu	37	chr10	26377234	26377234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	atgacaattctagcagatttGgaaaatacttagaaatgaaa	7	4	1	4			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	26377234	26377234	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.1462	p.G488R	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	58	0	0	44	8	15.38	-	-	-	A	26377234	G	A	26377234	3	1	252	1	0	0	0	0	1	0	0	0	10148	1349	47	4	1512	4	MYO3A	10	26377234	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		26377234	109157513	34	23712										
RET	0	genome.wustl.edu	37	chr10	43597899	43597899	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gcccgcgtatacttctccttCttcaacacctcctttccagc	4	18	3	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	43597899	43597899	C	T	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	silent	c.447	p.F149	0.345	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	48	0	0	43	11	20.37	-	-	-	T	43597899	C	T	43597899	2	4	252	1	0	0	0	0	0	0	0	1	13318	912	32	2		2	RET	10	43597899	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	17220665	43597899	91936848	35	23713										
KIAA0913	0	genome.wustl.edu	37	chr10	75558790	75558790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tgttggagaaggcctgcatgGcagtggaagaggcagctaag	17	6	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	75558790	75558790	G	T	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.4207	p.A1403S	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	27	0	0	25	4	13.79	-	-	-	T	75558790	G	T	75558790	3	4	252	1	0	0	0	0	1	0	0	0	8252	1203	42	4	4289	4	KIAA0913	10	75558790	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	31960891	75558790	59975957	36	23714										
INPP5F	0	genome.wustl.edu	37	chr10	121565916	121565916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	taagcaggaagggatttttcGtgttaattgtatggactgcc	12	5	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	121565916	121565916	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	missense	c.1364	p.R455H	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	49	0	0	36	16	30.19	-	-	-	A	121565916	G	A	121565916	3	1	252	1	0	0	0	0	1	0	0	0	7812	1145	40	1	1410	1	INPP5F	10	121565916	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	46007126	121565916	13968831	37	23715										
GLRX3	0	genome.wustl.edu	37	chr10	131967700	131967700	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	caattttctctctttaggctCaaagtgctgacaaataaagc	6	9	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	131967700	131967700	C	T	SNP	GLRX3	ENST00000331244	human	ensembl	69_37n	1	known	silent	c.717	p.L239	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010	59	0	0	46	11	19.3	-	-	-	T	131967700	C	T	131967700	2	4	252	1	0	0	0	0	0	0	0	1	6513	813	29	2		2	GLRX3	10	131967700	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	10401784	131967700	3567047	38	23716										
EPS8L2	0	genome.wustl.edu	37	chr11	726444	726444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cctacgagtcgggtccggacGaggtccgcgcctggctggaa	16	13	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	726444	726444	G	A	SNP	EPS8L2	ENST00000318562	human	ensembl	69_37n	1	known	missense	c.1894	p.E632K	0.827	superfamily_SAM/pointed	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106	11	0	0	0	4	100	-	-	-	A	726444	G	A	726444	3	1	252	1	0	0	0	0	1	0	0	0	5233	1059	37	1	1964	1	EPS8L2	11	726444	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		726444	134280072	39	23717										
USP47	0	genome.wustl.edu	37	chr11	11979020	11979020	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	aaactttttcatgccagatgCtgtttacaacaatgaacatg	6	8	1	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	11979020	11979020	C	A	SNP	USP47	ENST00000305481	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP47	HGNC	ENSG00000170242	78	0	0	47	14	22.95	-	-	-	A	11979020	C	A	11979020	1	1	252	0	1	0	0	0	0	0	0	0	17175	812	28	4		4	USP47	11	11979020	RNA	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	11252576	11979020	123027496	40	23718										
PDE3B	0	genome.wustl.edu	37	chr11	14665751	14665751	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gccccttgcggcaggaccctCcgcgcggcttcttcttccac	10	19	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	14665751	14665751	C	G	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	missense	c.130	p.P44A	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	10	0	0	8	6	42.86	-	-	-	G	14665751	C	G	14665751	3	3	252	1	0	0	0	0	1	0	0	0	11711	855	30	2	132	2	PDE3B	11	14665751	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	2686731	14665751	120340765	41	23719										
CTSW	0	genome.wustl.edu	37	chr11	65650290	65650290	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gactacccgttccagggcaaAgtcagagcccacaggtgcca	11	14	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	65650290	65650290	A	G	SNP	CTSW	ENST00000307886	human	ensembl	69_37n	1	known	silent	c.660	p.K220	0.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543	28	0	0	36	5	12.2	-	-	-	G	65650290	A	G	65650290	2	3	252	1	0	0	0	0	0	0	0	1	4074	69	3	5		5	CTSW	11	65650290	Silent	SNP	A	TCGA-AC-A2QI-01A-12D-A19Y-09	50984539	65650290	69356226	42	23720										
ACSS3	0	genome.wustl.edu	37	chr12	81568688	81568688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccgtcaacaggaccctggggCagctttggggaagcagtact	14	11	1	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	81568688	81568688	C	T	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.1220	p.A407V	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	35	0	0	45	9	16.67	-	-	-	T	81568688	C	T	81568688	3	4	252	1	0	0	0	0	1	0	0	0	190	710	25	4	1250	4	ACSS3	12	81568688	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		81568688	52283207	43	23721										
SETD8	0	genome.wustl.edu	37	chr12	123874686	123874686	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggaggctgcggggctgcagtGatttgagaggggtcaggctc	20	7	1	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	123874686	123874686	G	A	SNP	SETD8	ENST00000437502	human	ensembl	69_37n	1	putative	missense	c.94	p.D32N	0.000	pirsf_Hist_H4-K20_MeTrfase	pfam_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_stop_codon	SETD8	HGNC	ENSG00000183955	48	0	0	44	12	21.05	-	-	-	A	123874686	G	A	123874686	3	1	252	1	0	0	0	0	1	0	0	0	14225	1305	45	2		2	SETD8	12	123874686	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	42305998	123874686	9977209	44	23722										
UBC	0	genome.wustl.edu	37	chr12	125397564	125397564	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gatctttgctttgacgttctCgatagtgtcactgggctcga	11	9	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	125397564	125397564	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.754	p.E252Q	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	73	0	0	51	11	17.74	-	-	-	G	125397564	C	G	125397564	3	3	252	1	0	0	0	0	1	0	0	0	16939	893	31	3	1307	3	UBC	12	125397564	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	1522878	125397564	8454331	45	23723			1	48		2	2	25	C		6.667148e-05
UBC	0	genome.wustl.edu	37	chr12	125397588	125397588	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agtgtcactgggctcgacctCaagggtgatggtcttgccag	14	10	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	125397588	125397588	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.730	p.E244Q	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	68	0	0	47	9	16.07	-	-	-	G	125397588	C	G	125397588	3	3	252	1	0	0	0	0	1	0	0	0	16939	835	29	2	1331	2	UBC	12	125397588	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	24	125397588	8454307	46	23724			1	48		2	2	25	C		6.667148e-05
HMGB1	0	genome.wustl.edu	37	chr13	31039984	31039984	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gtccggctctcacttgccccGgtgctgtctctatggagctc	11	15	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	31039984	31039984	G	A	SNP	HMGB1	ENST00000468384	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403	29	0	0	24	9	26.47	-	-	-	A	31039984	G	A	31039984	1	1	252	0	1	0	0	0	0	0	0	0	7276	1131	39	1		1	HMGB1	13	31039984	RNA	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		31039984	84129894	47	23725										
ALG5	0	genome.wustl.edu	37	chr13	37569615	37569615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cagaaagttgtttggtaggtGagtcccatatgctgggtaaa	13	5	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	37569615	37569615	G	A	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.185	p.S62L	0.960	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	73	0	0	43	17	28.33	-	-	-	A	37569615	G	A	37569615	3	1	252	1	0	0	0	0	1	0	0	0	521	1294	45	2	825	2	ALG5	13	37569615	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	6529631	37569615	77600263	48	23726										
LMO7	0	genome.wustl.edu	37	chr13	76335112	76335112	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gcttgtgaacagattggattGaaagaagcccagcttttcca	10	8	0	4			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	76335112	76335112	G	C	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	missense	c.411	p.L137F	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	38	0	0	34	7	17.07	-	-	-	C	76335112	G	C	76335112	3	2	252	1	0	0	0	0	1	0	0	0	8911	1281	45	2	429	2	LMO7	13	76335112	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	38765497	76335112	38834766	49	23727										
SLAIN1	0	genome.wustl.edu	37	chr13	78337312	78337312	+	Missense_Mutation	SNP	T	T	C													0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tccaaagcctctgtcttcacTcagcactctgagggatggaa							TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	78337312	78337312	T	C	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	1	known	missense	c.1664	p.L555P	1.000	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	106	0	0	70	25	26.04	-	-	-	C	78337312	T	C	78337312	3	2	252	1	0	0	0	0	1	0	0	0	14454	1551	54	5	1029	5	SLAIN1	13	78337312	Missense_Mutation	SNP	T	TCGA-AC-A2QI-01A-12D-A19Y-09	2002200	78337312	36832566	50	23728	220	2								
SLAIN1	0	genome.wustl.edu	37	chr13	78337313	78337313	+	Silent	SNP	C	C	T													0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccaaagcctctgtcttcactCagcactctgagggatggaaa							TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	78337313	78337313	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	1	known	silent	c.1665	p.L555	1.000	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	105	0	0	71	23	24.47	-	-	-	T	78337313	C	T	78337313	2	4	252	1	0	0	0	0	0	0	0	1	14454	813	29	2		2	SLAIN1	13	78337313	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	1	78337313	36832565	51	23729	220	2								
NALCN	0	genome.wustl.edu	37	chr13	102047687	102047687	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	acagaaatgacgctgatgatGgcacagatgcgcagcaaaga	12	8	0	6			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	102047687	102047687	G	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.138	p.A46	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	30	0	0	15	8	33.33	-	-	-	T	102047687	G	T	102047687	2	4	252	1	0	0	0	0	0	0	0	1	10220	1335	47	4		4	NALCN	13	102047687	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	23710374	102047687	13122191	52	23730										
SALL2	0	genome.wustl.edu	37	chr14	21993215	21993215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gactggcaggggcacccaccGtctggcctaaggagccaagc	14	14	1	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	21993215	21993215	G	A	SNP	SALL2	ENST00000327430	human	ensembl	69_37n	-1	known	missense	c.647	p.T216M	0.446	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	25	0	0	19	5	20.83	-	-	-	A	21993215	G	A	21993215	3	1	252	1	0	0	0	0	1	0	0	0	13897	1145	40	1	2380	1	SALL2	14	21993215	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		21993215	85356325	53	23731										
TRIM9	0	genome.wustl.edu	37	chr14	51467550	51467550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gataggggttgctgggactgGagaggaagctaaacagaaat	16	4	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	51467550	51467550	G	A	SNP	TRIM9	ENST00000298355	human	ensembl	69_37n	-1	known	missense	c.1315	p.P439S	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	55	0	0	50	13	20.63	-	-	-	A	51467550	G	A	51467550	3	1	252	1	0	0	0	0	1	0	0	0	16645	1174	41	2	887	2	TRIM9	14	51467550	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	29474335	51467550	55881990	54	23732										
ZNF410	0	genome.wustl.edu	37	chr14	74358886	74358886	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggaagctgaatcaatgttatCagatgagttagaatccaaac	9	6	2	4			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	74358886	74358886	C	T	SNP	ZNF410	ENST00000555044	human	ensembl	69_37n	1	known	missense	c.8	p.S3L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF410	HGNC	ENSG00000119725	120	0	0	100	26	20.63	-	-	-	T	74358886	C	T	74358886	3	4	252	1	0	0	0	0	1	0	0	0	17986	838	29	2	10	2	ZNF410	14	74358886	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	22891336	74358886	32990654	55	23733										
LTBP2	0	genome.wustl.edu	37	chr14	74969268	74969268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tccccttcccagtcctcaccCtgctggcaatatgactagca	6	17	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	74969268	74969268	C	T	SNP	LTBP2	ENST00000553939	human	ensembl	69_37n	-1	known	missense	c.5258	p.R1753K	0.001	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	9	0	0	6	14	70	-	-	-	T	74969268	C	T	74969268	3	4	252	1	0	0	0	0	1	0	0	0	9140	696	24	4		4	LTBP2	14	74969268	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	610382	74969268	32380272	56	23734										
MYO1E	0	genome.wustl.edu	37	chr15	59428908	59428908	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	acacaaaccaatatgggccaGccacattctaattgaagacc	6	12	1	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	15	59428908	59428908	G	T	SNP	MYO1E	ENST00000559412	human	ensembl	69_37n	-1	putative	silent	c.198	p.G66	1.000	NULL	NULL	-	no_start_codon	MYO1E	HGNC	ENSG00000157483	41	0	0	36	4	10	-	-	-	T	59428908	G	T	59428908	2	4	252	1	0	0	0	0	0	0	0	1	10144	986	34	4		4	MYO1E	15	59428908	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		59428908	43102484	57	23735										
CHTF18	0	genome.wustl.edu	37	chr16	842805	842805	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tcgaggctggtgcagcggctCcaggaggtcggtggagcccc	18	12	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	842805	842805	C	G	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	silent	c.2151	p.L717	0.080	smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	41	0	0	47	8	14.55	-	-	-	G	842805	C	G	842805	2	3	252	1	0	0	0	0	0	0	0	1	3443	842	30	2		2	CHTF18	16	842805	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		842805	89511948	58	23736										
STX4	0	genome.wustl.edu	37	chr16	31045531	31045531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	catatctctttcagccctctCggtcaccctccccaggtccg	6	19	4	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	31045531	31045531	C	T	SNP	STX4	ENST00000460668	human	ensembl	69_37n	1	known	missense	c.139	p.R47W	0.972	NULL	NULL	-	no_errors	STX4	HGNC	ENSG00000103496	53	0	0	59	14	19.18	-	-	-	T	31045531	C	T	31045531	3	4	252	1	0	0	0	0	1	0	0	0	15438	899	31	1		1	STX4	16	31045531	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	30202726	31045531	59309222	59	23737										
PRSS54	0	genome.wustl.edu	37	chr16	58314580	58314580	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	aaacaggccagggcacgtctCaccaccgaagttcaggactc	10	14	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	58314580	58314580	C	T	SNP	PRSS54	ENST00000219301	human	ensembl	69_37n	-1	known	missense	c.736	p.E246K	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	-	no_errors	PRSS54	HGNC	ENSG00000103023	29	0	0	10	9	47.37	-	-	-	T	58314580	C	T	58314580	3	4	252	1	0	0	0	0	1	0	0	0	12713	835	29	2	455	2	PRSS54	16	58314580	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	27269049	58314580	32040173	60	23738										
CDH13	0	genome.wustl.edu	37	chr16	83214480	83214480	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ttttttttcttacagagaacCcacaatcctattaacagcga	4	10	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	83214480	83214480	C	A	SNP	CDH13	ENST00000431540	human	ensembl	69_37n	1	putative	silent	c.489	p.T163	0.685	NULL	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	-	no_errors	CDH13	HGNC	ENSG00000140945	32	0	0	14	6	30	-	-	-	A	83214480	C	A	83214480	2	1	252	1	0	0	0	0	0	0	0	1	3128	638	22	4		4	CDH13	16	83214480	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	24899900	83214480	7140273	61	23739										
MAP2K3	0	genome.wustl.edu	37	chr17	21215457	21215457	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccctgtccccgctgcagattGagatggccatcctgcggttc	11	15	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	21215457	21215457	G	A	SNP	MAP2K3	ENST00000342679	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152	122	0	0	98	12	10.91	-	-	-	A	21215457	G	A	21215457	3	1	252	1	0	0	0	0	1	0	0	0	9309	1291	45	2	816	2	MAP2K3	17	21215457	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		21215457	59979753	62	23740										
CWC25	0	genome.wustl.edu	37	chr17	36971290	36971290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gggcgccccagcaggtactcGtcacggttcaccatcccacc	10	18	2	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	36971290	36971290	G	A	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	silent	c.252	p.D84	0.974	pfam_CWC25	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	32	0	0	35	7	16.67	-	-	-	A	36971290	G	A	36971290	2	1	252	1	0	0	0	0	0	0	0	1	4100	1136	40	1		1	CWC25	17	36971290	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	15755833	36971290	44223920	63	23741										
KRT17	0	genome.wustl.edu	37	chr17	39780674	39780674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	acccaggccgccagacagccGgcaggaggtgcgggacgagc	17	14	0	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	39780674	39780674	G	A	SNP	KRT17	ENST00000311208	human	ensembl	69_37n	-1	known	missense	c.88	p.R30W	0.436	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT17	HGNC	ENSG00000128422	88	0	0	60	23	27.71	-	-	-	A	39780674	G	A	39780674	3	1	252	1	0	0	0	0	1	0	0	0	8507	1115	39	1	1242	1	KRT17	17	39780674	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	2809384	39780674	41414536	64	23742										
CD300LG	0	genome.wustl.edu	37	chr17	41939191	41939191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ggaggaaaaggaagccccttCccaggcccctgagggggacg	16	12	0	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	41939191	41939191	C	G	SNP	CD300LG	ENST00000317310	human	ensembl	69_37n	1	known	missense	c.911	p.S304C	0.004	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LG	HGNC	ENSG00000161649	29	0	0	25	11	29.73	-	-	-	G	41939191	C	G	41939191	3	3	252	1	0	0	0	0	1	0	0	0	3031	855	30	2	1056	2	CD300LG	17	41939191	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	2158517	41939191	39256019	65	23743										
RNFT1	0	genome.wustl.edu	37	chr17	58034639	58034639	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccaagactccatctagttacGttaccaaactccccatagct	4	15	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	58034639	58034639	G	T	SNP	RNFT1	ENST00000305783	human	ensembl	69_37n	-1	known	missense	c.951	p.N317K	0.939	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050	35	0	0	29	4	12.12	-	-	-	T	58034639	G	T	58034639	3	4	252	1	0	0	0	0	1	0	0	0	13587	1136	40	3	372	3	RNFT1	17	58034639	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	16095448	58034639	23160571	66	23744										
SMURF2	0	genome.wustl.edu	37	chr17	62547752	62547752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cagatgttgtggaattacttCattaaatcctttctgcagag	8	7	2	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	62547752	62547752	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	missense	c.1819	p.E607K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	73	0	0	47	21	30.88	-	-	-	T	62547752	C	T	62547752	3	4	252	1	0	0	0	0	1	0	0	0	14909	835	29	2	443	2	SMURF2	17	62547752	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	4513113	62547752	18647458	67	23745										
CARD14	0	genome.wustl.edu	37	chr17	78178979	78178979	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agcgagaaactgtgcctcctCcaagggtttaagaagtgcct	11	10	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	78178979	78178979	C	T	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	1	known	silent	c.2544	p.L848	0.528	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	51	0	0	53	25	32.05	-	-	-	T	78178979	C	T	78178979	2	4	252	1	0	0	0	0	0	0	0	1	2671	842	30	2		2	CARD14	17	78178979	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	15631227	78178979	3016231	68	23746										
LAMA1	0	genome.wustl.edu	37	chr18	6943275	6943275	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tgcgttcccgtcaacaatcaGagtgatacggtgtttgcttt	10	9	2	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	18	6943275	6943275	G	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.8971	p.L2991V	0.694	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	124	0	0	104	23	18.11	-	-	-	C	6943275	G	C	6943275	3	2	252	1	0	0	0	0	1	0	0	0	8659	933	33	2	264	2	LAMA1	18	6943275	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		6943275	71133973	69	23747										
DNM2	0	genome.wustl.edu	37	chr19	10908144	10908144	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agccgagtttgaagtgtgttGatctcgtggtctcagagctg	14	7	2	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	10908144	10908144	G	C	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	missense	c.1285	p.D429H	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	59	0	0	46	8	14.55	-	-	-	C	10908144	G	C	10908144	3	2	252	1	0	0	0	0	1	0	0	0	4707	1290	45	2	1466	2	DNM2	19	10908144	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		10908144	48220839	70	23748										
ZNF790	0	genome.wustl.edu	37	chr19	37309377	37309377	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	gagcttgaagaaaatgctttCtcaaaatctttaaattcata	5	6	3	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	37309377	37309377	C	G	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1869	p.E623D	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	93	0	0	49	15	22.73	-	-	-	G	37309377	C	G	37309377	3	3	252	1	0	0	0	0	1	0	0	0	18255	912	32	2	45	2	ZNF790	19	37309377	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	26401233	37309377	21819606	71	23749										
ZNF790	0	genome.wustl.edu	37	chr19	37309555	37309555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agatgtggctacttttcttgCatccataaggttctgcatca	8	9	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	37309555	37309555	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1691	p.C564Y	0.413	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	23	0	0	20	7	25.93	-	-	-	T	37309555	C	T	37309555	3	4	252	1	0	0	0	0	1	0	0	0	18255	710	25	4	223	4	ZNF790	19	37309555	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	178	37309555	21819428	72	23750										
CATSPERG	0	genome.wustl.edu	37	chr19	38858703	38858703	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cacaggaccaacagccttatCtggaccacgaggaccacaag	9	14	1	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	38858703	38858703	C	G	SNP	CATSPERG	ENST00000409235	human	ensembl	69_37n	1	known	missense	c.2946	p.I982M	1.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	26	0	0	21	8	27.59	-	-	-	G	38858703	C	G	38858703	3	3	252	1	0	0	0	0	1	0	0	0	2717	903	32	2	3044	2	CATSPERG	19	38858703	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	1549148	38858703	20270280	73	23751										
MEGF8	0	genome.wustl.edu	37	chr19	42857928	42857928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ctcttctccatctccccaggGccggtggttcctgctttcgg	10	16	3	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	42857928	42857928	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.3763	p.A1255T	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	41	0	0	25	10	28.57	-	-	-	A	42857928	G	A	42857928	3	1	252	1	0	0	0	0	1	0	0	0	9534	1217	42	4	3644	4	MEGF8	19	42857928	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	3999225	42857928	16271055	74	23752										
CNOT3	0	genome.wustl.edu	37	chr19	54656056	54656056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tgccaacgctgcacctgaccGagcgaggtgagggacccagg	15	13	0	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	54656056	54656056	G	A	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.1699	p.E567K	0.996	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	69	0	0	48	12	20	-	-	-	A	54656056	G	A	54656056	3	1	252	1	0	0	0	0	1	0	0	0	3650	1059	37	1	1749	1	CNOT3	19	54656056	Missense_Mutation	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	11798128	54656056	4472927	75	23753										
SNRPB	0	genome.wustl.edu	37	chr20	2446383	2446383	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	aggaggtccctctactgtcaTtgagaccagattctcccctc	8	14	3	2			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	2446383	2446383	T	C	SNP	SNRPB	ENST00000438552	human	ensembl	69_37n	-1	known	missense	c.238	p.M80V	0.994	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835	42	0	0	39	13	25	-	-	-	C	2446383	T	C	2446383	3	2	252	1	0	0	0	0	1	0	0	0	14950	1493	52	5	519	5	SNRPB	20	2446383	Missense_Mutation	SNP	T	TCGA-AC-A2QI-01A-12D-A19Y-09		2446383	60579137	76	23754										
CDS2	0	genome.wustl.edu	37	chr20	5155847	5155847	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agatggaagaactggtgggtGagaggcatcctgactttggc	16	6	0	4			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	5155847	5155847	G	T	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	1	known	silent	c.213	p.V71	0.998	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	59	0	0	58	10	14.71	-	-	-	T	5155847	G	T	5155847	2	4	252	1	0	0	0	0	0	0	0	1	3207	1277	45	2		2	CDS2	20	5155847	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	2709464	5155847	57869673	77	23755										
PLK1S1	0	genome.wustl.edu	37	chr20	21224941	21224941	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ctaatggtgagagagataatCggacactagattttcttttt	9	5	1	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	21224941	21224941	C	T	SNP	PLK1S1	ENST00000451772	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970	64	0	0	51	17	25	-	-	-	T	21224941	C	T	21224941	1	4	252	0	1	0	0	0	0	0	0	0	12169	899	31	1		1	PLK1S1	20	21224941	RNA	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	16069094	21224941	41800579	78	23756										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31946930	31946930	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tgagaactggctgaggtgatCtgaaagaaaaccaggcagaa	13	6	1	6			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	31946930	31946930	C	T	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	splice_site	c.1726-1	e14-1	1.000	-	-	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	26	0	0	15	5	25	-	-	-	T	31946930	C	T	31946930	5	4	252	1	0	0	0	0	0	0	1	0	3174	927	32	2	84	2	CDK5RAP1	20	31946930	Splice_Site	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	10721989	31946930	31078590	79	23757										
PRIC285	0	genome.wustl.edu	37	chr20	62203329	62203329	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ctacggtgggctcctgccctActccaagctcctgggagcct	11	16	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	62203329	62203329	A	G	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.196	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	45	0	0	41	5	10.64	-	-	-	G	62203329	A	G	62203329	1	3	252	0	1	0	0	0	0	0	0	0	12566	406	14	5		5	PRIC285	20	62203329	RNA	SNP	A	TCGA-AC-A2QI-01A-12D-A19Y-09	30256399	62203329	822191	80	23758										
JAM2	0	genome.wustl.edu	37	chr21	27012166	27012166	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agccgccaccgcctcctcctGctgctgctgcgctacctggt	10	19	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	21	27012166	27012166	G	C	SNP	JAM2	ENST00000400535	human	ensembl	69_37n	1	known	silent	c.33	p.L11	0.207	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	JAM2	HGNC	ENSG00000154721	64	0	0	49	14	22.22	-	-	-	C	27012166	G	C	27012166	2	2	252	1	0	0	0	0	0	0	0	1	7997	1306	46	4		4	JAM2	21	27012166	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09		27012166	21117729	81	23759										
TRPM2	0	genome.wustl.edu	37	chr21	45833778	45833778	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	ccattcccaacgccaggtgtGaacttcaacccggagcactg	9	15	1	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	21	45833778	45833778	G	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.2967	p.V989	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	34	0	0	36	16	30.77	-	-	-	T	45833778	G	T	45833778	2	4	252	1	0	0	0	0	0	0	0	1	16682	1277	45	2		2	TRPM2	21	45833778	Silent	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	18821612	45833778	2296117	82	23760										
GGT1	0	genome.wustl.edu	37	chr22	25007131	25007131	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cctctgtctctggctgccctCagcctccaaggaacctgaca	8	17	3	1			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	22	25007131	25007131	C	T	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	1	known	missense	c.83	p.S28L	0.062	NULL	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	126	0	0	98	33	25	-	-	-	T	25007131	C	T	25007131	3	4	252	1	0	0	0	0	1	0	0	0	6413	838	29	2	85	2	GGT1	22	25007131	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09		25007131	26297435	83	23761										
GGT1	0	genome.wustl.edu	37	chr22	25019803	25019803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	agcagaagggcctgacgtacCaccgcatcgtagaggctttc	12	12	0	3			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	22	25019803	25019803	C	T	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	1	known	missense	c.940	p.H314Y	1.000	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	95	0	0	114	17	12.98	-	-	-	T	25019803	C	T	25019803	3	4	252	1	0	0	0	0	1	0	0	0	6413	594	21	4	966	4	GGT1	22	25019803	Missense_Mutation	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	12672	25019803	26284763	84	23762										
TAF1	0	genome.wustl.edu	37	chrX	70678200	70678200	+	Frame_Shift_Del	DEL	A	A	-													0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tattcccagtgccactccagAaaagcaggtaacacaggtag							TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	70678200	70678200	A	-	DEL	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	frame_shift_del	c.5045	p.K1683fs	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	118	1	0.84	95	34	25.95	-	-	-	-	70678200	A	-	70678200	7	5	252	1	0	1	0	1	0	0	0	0	15605	246	9	0	5246	0	TAF1	23	70678200	Frame_Shift_Del	DEL	A	TCGA-AC-A2QI-01A-12D-A19Y-09		70678200	84592360	85	23763										
FAM127A	0	genome.wustl.edu	37	chrX	134167176	134167176	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	cctgcgctgccacagccatcGccatccatcgcatcccaccg	7	21	0	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	134167176	134167176	G	A	SNP	FAM127A	ENST00000464369	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127A	HGNC	ENSG00000134590	58	0	0	50	15	23.08	-	-	-	A	134167176	G	A	134167176	1	1	252	0	1	0	0	0	0	0	0	0	5471	1102	38	1		1	FAM127A	23	134167176	RNA	SNP	G	TCGA-AC-A2QI-01A-12D-A19Y-09	63488976	134167176	21103384	86	23764										
HTATSF1	0	genome.wustl.edu	37	chrX	135581801	135581801	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.337209302325581	29	1.57463979602993e-08	3.3661762721015	3.92544693799924	3.2455492657314	3.06374488751171e-05	0.00130275760868976	20	tatcaggccaattatggcttCtctaacgatggcgcatctag	9	10	3	0			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	135581801	135581801	C	T	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	silent	c.231	p.F77	0.840	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	79	0	0	61	10	14.08	-	-	-	T	135581801	C	T	135581801	2	4	252	1	0	0	0	0	0	0	0	1	7487	912	32	2		2	HTATSF1	23	135581801	Silent	SNP	C	TCGA-AC-A2QI-01A-12D-A19Y-09	1414625	135581801	19688759	87	23765										
DNAJC11	0	genome.wustl.edu	37	chr1	6694980	6694980	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tggaggtgggtggtgcaggcGgtggagggacacaggccagc	22	7	0	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	6694980	6694980	G	A	SNP	DNAJC11	ENST00000465508	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DNAJC11	HGNC	ENSG00000007923	27	0	0	18	4	18.18	-	-	-	A	6694980	G	A	6694980	1	1	253	0	1	0	0	0	0	0	0	0	4665	1131	39	1		1	DNAJC11	1	6694980	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		6694980	242555641	1	23766										
TNFRSF1B	0	genome.wustl.edu	37	chr1	12268499	12268499	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ctgcgtctgtgttgcgtgtcGtgggtgtgtgtagccaaggt	17	7	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12268499	12268499	G	A	SNP	TNFRSF1B	ENST00000492361	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137	18	0	0	9	3	25	-	-	-	A	12268499	G	A	12268499	1	1	253	0	1	0	0	0	0	0	0	0	16389	1160	40	1		1	TNFRSF1B	1	12268499	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	5573519	12268499	236982122	2	23767										
PRAMEF2	0	genome.wustl.edu	37	chr1	12921333	12921333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	catcctgcctggcctgagctGctgctcccagctcaccacct	8	19	1	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12921333	12921333	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.1124	p.C375Y	0.676	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	97	0	0	94	11	10.48	-	-	-	A	12921333	G	A	12921333	3	1	253	1	0	0	0	0	1	0	0	0	12513	1319	46	4	1134	4	PRAMEF2	1	12921333	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	652834	12921333	236329288	3	23768										
PRAMEF4	0	genome.wustl.edu	37	chr1	12943200	12943200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	caggagtctgggtggagtccAgatgctcatcttcatgaatc	12	9	4	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12943200	12943200	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.16	p.W6R	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	63	0	0	52	7	11.86	-	-	-	G	12943200	A	G	12943200	3	3	253	1	0	0	0	0	1	0	0	0	12517	188	7	5	1432	5	PRAMEF4	1	12943200	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	21867	12943200	236307421	4	23769										
GPATCH4	0	genome.wustl.edu	37	chr1	156567712	156567712	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gcaaggctggtcacaggatcCcactatgttaggaaagttct	11	9	2	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	156567712	156567712	C	T	SNP	GPATCH4	ENST00000474904	human	ensembl	69_37n	-1	known	nonsense	c.336	p.W112*	0.003	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818	31	0	0	32	4	11.11	-	-	-	T	156567712	C	T	156567712	4	4	253	1	0	0	0	0	0	1	0	0	6643	638	22	4		4	GPATCH4	1	156567712	Nonsense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	143624512	156567712	92682909	5	23770										
FCRLB	0	genome.wustl.edu	37	chr1	161696088	161696088	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gtccctttccccgacgcacaTcctggcttctcactctggct	7	18	2	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	161696088	161696088	T	C	SNP	FCRLB	ENST00000495397	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRLB	HGNC	ENSG00000162746	23	0	0	24	4	14.29	-	-	-	C	161696088	T	C	161696088	1	2	253	0	1	0	0	0	0	0	0	0	5847	1450	50	5		5	FCRLB	1	161696088	RNA	SNP	T	TCGA-AC-A2QJ-01A-12D-A19Y-09	5128376	161696088	87554533	6	23771										
HSD17B7	0	genome.wustl.edu	37	chr1	162760551	162760551	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	aggacttccgaaagcagcggCggtgtttgcttcactgcttg	13	10	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	162760551	162760551	C	T	SNP	HSD17B7	ENST00000463037	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B7	HGNC	ENSG00000132196	40	0	0	41	8	16.33	-	-	-	T	162760551	C	T	162760551	1	4	253	0	1	0	0	0	0	0	0	0	7439	783	27	1		1	HSD17B7	1	162760551	RNA	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	1064463	162760551	86490070	7	23772										
MGST3	0	genome.wustl.edu	37	chr1	165630698	165630698	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gtttggcttccctgggccacActggaagaagaagaattgtc	12	9	0	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	165630698	165630698	A	G	SNP	MGST3	ENST00000367888	human	ensembl	69_37n	1	putative	missense	c.355	p.T119A	0.136	NULL	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198	25	0	0	51	9	15	-	-	-	G	165630698	A	G	165630698	3	3	253	1	0	0	0	0	1	0	0	0	9633	174	6	5		5	MGST3	1	165630698	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	2870147	165630698	83619923	8	23773										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185267114	185267114	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ttattcacaagtgtacctctActaaccataattacatcact	2	11	3	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	185267114	185267114	A	G	SNP	IVNS1ABP	ENST00000459929	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	57	0	0	74	10	11.9	-	-	-	G	185267114	A	G	185267114	1	3	253	0	1	0	0	0	0	0	0	0	7984	406	14	5		5	IVNS1ABP	1	185267114	RNA	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	19636416	185267114	63983507	9	23774										
TIMM17A	0	genome.wustl.edu	37	chr1	201938995	201938995	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	cagtgaaatatgatcatcatCtccttgcggacttctctgcc	7	12	4	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	201938995	201938995	C	T	SNP	TIMM17A	ENST00000482943	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.392	-	-	-	no_errors	TIMM17A	HGNC	ENSG00000134375	43	0	0	49	7	12.5	-	-	-	T	201938995	C	T	201938995	1	4	253	0	1	0	0	0	0	0	0	0	16003	928	32	2		2	TIMM17A	1	201938995	RNA	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	16671881	201938995	47311626	10	23775										
SMYD2	0	genome.wustl.edu	37	chr1	214500907	214500907	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tagcaagtaagtagtgaaggAagctaaacagtctgcctatc	10	7	1	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	214500907	214500907	A	C	SNP	SMYD2	ENST00000484459	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SMYD2	HGNC	ENSG00000143499	35	0	0	31	8	20	-	-	-	C	214500907	A	C	214500907	1	2	253	0	1	0	0	0	0	0	0	0	14911	261	9	5		5	SMYD2	1	214500907	RNA	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	12561912	214500907	34749714	11	23776										
PLD5	0	genome.wustl.edu	37	chr1	242687390	242687390	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	cgggagcgagtcgcccttacGtgctccagcttgtctttcct	11	14	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	242687390	242687390	G	A	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.189	p.H63	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	29	0	0	25	4	13.79	-	-	-	A	242687390	G	A	242687390	2	1	253	1	0	0	0	0	0	0	0	1	12123	1159	40	1		1	PLD5	1	242687390	Silent	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	28186483	242687390	6563231	12	23777										
TPO	0	genome.wustl.edu	37	chr2	1544617	1544617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tactccgtgtttcctagtccGttctgcaccttcctccggga	8	15	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	1544617	1544617	G	A	SNP	TPO	ENST00000422464	human	ensembl	69_37n	1	novel	missense	c.2525	p.R842H	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_Sushi_SCR_CCP,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_Haem_peroxidase_animal_subgr,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal	-	no_start_codon	TPO	HGNC	ENSG00000115705	39	0	0	37	5	11.9	-	-	-	A	1544617	G	A	1544617	3	1	253	1	0	0	0	0	1	0	0	0	16506	1160	40	1		1	TPO	2	1544617	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		1544617	241654756	13	23778										
C2orf43	0	genome.wustl.edu	37	chr2	20885321	20885321	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	acttaccaataagttggcagCaaatcagagccaaatctttc	6	10	2	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	20885321	20885321	C	A	SNP	C2orf43	ENST00000403006	human	ensembl	69_37n	-1	putative	missense	c.681	p.L227F	0.234	NULL	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961	30	0	0	56	8	12.5	-	-	-	A	20885321	C	A	20885321	3	1	253	1	0	0	0	0	1	0	0	0	2187	725	25	4		4	C2orf43	2	20885321	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	19340704	20885321	222314052	14	23779										
ANAPC1	0	genome.wustl.edu	37	chr2	112552427	112552427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	aaattcaaatcctctgagcaCggcaattcgatttcactgag	7	10	3	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	112552427	112552427	C	T	SNP	ANAPC1	ENST00000427997	human	ensembl	69_37n	-1	novel	missense	c.2944	p.V982M	0.951	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC1	HGNC	ENSG00000153107	32	0	0	32	5	13.51	-	-	-	T	112552427	C	T	112552427	3	4	253	1	0	0	0	0	1	0	0	0	598	523	19	1	1549	1	ANAPC1	2	112552427	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	91667106	112552427	130646946	15	23780										
CYBRD1	0	genome.wustl.edu	37	chr2	172379781	172379781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gcagcggggaaaagattgccGgagcgagaatttgcccgtat	15	8	0	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	172379781	172379781	G	A	SNP	CYBRD1	ENST00000445146	human	ensembl	69_37n	1	putative	missense	c.35	p.R12Q	0.000	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_stop_codon:bad_bp_length_for_coding_region	CYBRD1	HGNC	ENSG00000071967	70	0	0	59	9	13.24	-	-	-	A	172379781	G	A	172379781	3	1	253	1	0	0	0	0	1	0	0	0	4165	1131	39	1		1	CYBRD1	2	172379781	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	59827354	172379781	70819592	16	23781										
PLEKHA3	0	genome.wustl.edu	37	chr2	179367086	179367086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tgggtggagaaatgaaggaaAgaaaccgggaaggggaaggg	20	2	0	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	179367086	179367086	A	G	SNP	PLEKHA3	ENST00000421187	human	ensembl	69_37n	1	putative	missense	c.226	p.R76G	0.000	NULL	NULL	-	no_start_codon	PLEKHA3	HGNC	ENSG00000116095	34	0	0	28	5	15.15	-	-	-	G	179367086	A	G	179367086	3	3	253	1	0	0	0	0	1	0	0	0	12131	87	3	5		5	PLEKHA3	2	179367086	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	6987305	179367086	63832287	17	23782										
CCDC108	0	genome.wustl.edu	37	chr2	219892233	219892233	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	aggagacaaactcataggggTcactgtccagccaagagaaa	11	9	2	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	219892233	219892233	T	A	SNP	CCDC108	ENST00000409865	human	ensembl	69_37n	-1	putative	missense	c.2317	p.T773S	0.000	NULL	superfamily_PapD-like	-	no_errors	CCDC108	HGNC	ENSG00000181378	26	0	0	48	6	11.11	-	-	-	A	219892233	T	A	219892233	3	1	253	1	0	0	0	0	1	0	0	0	2768	1682	58	5		5	CCDC108	2	219892233	Missense_Mutation	SNP	T	TCGA-AC-A2QJ-01A-12D-A19Y-09	40525147	219892233	23307140	18	23783										
GPR55	0	genome.wustl.edu	37	chr2	231775277	231775277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tcccaaagatcttcctggggGaccggaggtggctcaccagt	13	12	2	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	231775277	231775277	G	T	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	missense	c.401	p.S134Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	38	0	0	32	4	11.11	-	-	-	T	231775277	G	T	231775277	3	4	253	1	0	0	0	0	1	0	0	0	6749	1174	41	2	562	2	GPR55	2	231775277	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	11883044	231775277	11424096	19	23784										
AGAP1	0	genome.wustl.edu	37	chr2	236761396	236761396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ggcctgctggagcccgtgccCgtcagtcctccccctggcca	12	19	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	236761396	236761396	C	T	SNP	AGAP1	ENST00000409457	human	ensembl	69_37n	1	novel	missense	c.1117	p.R373C	0.903	NULL	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	35	0	0	36	4	10	-	-	-	T	236761396	C	T	236761396	3	4	253	1	0	0	0	0	1	0	0	0	366	667	23	1		1	AGAP1	2	236761396	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	4986119	236761396	6437977	20	23785										
TSEN2	0	genome.wustl.edu	37	chr3	12560583	12560583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tttaacgatagtgaagctctGgaaagctttcactgtagttc	9	7	2	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	12560583	12560583	G	T	SNP	TSEN2	ENST00000284995	human	ensembl	69_37n	1	known	missense	c.986	p.W329L	1.000	pfam_tRNA_intron_Endonuc_N,pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743	43	0	0	44	5	10.2	-	-	-	T	12560583	G	T	12560583	3	4	253	1	0	0	0	0	1	0	0	0	16708	1357	47	4	1012	4	TSEN2	3	12560583	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		12560583	185461847	21	23786										
ZNF860	0	genome.wustl.edu	37	chr3	32031615	32031615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tacaaatgtaaggtttgtgaAaaggctttcaggcgtgattc	11	5	1	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	32031615	32031615	A	C	SNP	ZNF860	ENST00000360311	human	ensembl	69_37n	1	known	missense	c.1044	p.E348D	0.632	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385	51	0	0	62	8	11.43	-	-	-	C	32031615	A	C	32031615	3	2	253	1	0	0	0	0	1	0	0	0	18287	11	1	5	1046	5	ZNF860	3	32031615	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	19471032	32031615	165990815	22	23787										
MUC4	0	genome.wustl.edu	37	chr3	195492238	195492238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	cagctgggccaccgaggctgGctcttcagccactgcaggca	13	15	2	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	195492238	195492238	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.13701	p.S4567R	0.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	31	0	0	24	4	14.29	-	-	-	T	195492238	G	T	195492238	3	4	253	1	0	0	0	0	1	0	0	0	10050	1194	42	4	2605	4	MUC4	3	195492238	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	163460623	195492238	2530192	23	23788										
ERGIC1	0	genome.wustl.edu	37	chr5	172347440	172347440	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	agcctcaccagagaccccacGgtgacctcgtttcatcagcc	8	17	3	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	172347440	172347440	G	A	SNP	ERGIC1	ENST00000523650	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERGIC1	HGNC	ENSG00000113719	31	0	0	43	6	12.24	-	-	-	A	172347440	G	A	172347440	1	1	253	0	1	0	0	0	0	0	0	0	5260	1131	39	1		1	ERGIC1	5	172347440	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		172347440	8567820	24	23789										
GPR111	0	genome.wustl.edu	37	chr6	47624299	47624299	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ggctaacttgactctcatccAtacaagagcccagcctgtga	8	13	1	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	47624299	47624299	A	G	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.77	p.H26R	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	35	0	0	43	5	10.42	-	-	-	G	47624299	A	G	47624299	3	3	253	1	0	0	0	0	1	0	0	0	6678	232	8	5		5	GPR111	6	47624299	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09		47624299	123490768	25	23790										
SYNE1	0	genome.wustl.edu	37	chr6	152472750	152472750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	atgttcaatattagtgagctGcagatccatctctgtgagcc	9	9	2	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	152472750	152472750	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.24388	p.Q8130K	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	28	0	0	28	4	12.12	-	-	-	T	152472750	G	T	152472750	3	4	253	1	0	0	0	0	1	0	0	0	15537	1328	46	4	2126	4	SYNE1	6	152472750	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	104848451	152472750	18642317	26	23791										
SVOPL	0	genome.wustl.edu	37	chr7	138279228	138279228	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ccattcccatatatgcctttAaaaaaaaaatcactttacta	1	10	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	138279228	138279228	A	T	SNP	SVOPL	ENST00000463557	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SVOPL	HGNC	ENSG00000157703	34	0	0	33	14	29.79	-	-	-	T	138279228	A	T	138279228	1	4	253	0	1	0	0	0	0	0	0	0	15515	377	13	5		5	SVOPL	7	138279228	RNA	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09		138279228	20859435	27	23792										
KRBA1	0	genome.wustl.edu	37	chr7	149418856	149418856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ccctggggagcctgtcatccCgccccgatcactgagcactt	10	17	2	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	149418856	149418856	C	T	SNP	KRBA1	ENST00000467333	human	ensembl	69_37n	1	putative	missense	c.424	p.R142C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KRBA1	HGNC	ENSG00000133619	24	0	0	21	4	16	-	-	-	T	149418856	C	T	149418856	3	4	253	1	0	0	0	0	1	0	0	0	8492	667	23	1		1	KRBA1	7	149418856	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	11139628	149418856	9719807	28	23793										
GRIN3A	0	genome.wustl.edu	37	chr9	104375789	104375789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ggcggtcaatggagagttggGtgggaggccaatgccgtatc	18	7	1	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	9	104375789	104375789	G	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.2635	p.P879T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	42	0	0	34	4	10.53	-	-	-	T	104375789	G	T	104375789	3	4	253	1	0	0	0	0	1	0	0	0	6834	1261	44	4	728	4	GRIN3A	9	104375789	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		104375789	36837642	29	23794										
FRMPD2	0	genome.wustl.edu	37	chr10	49389016	49389016	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gaccccagaattggctgtgcTattcttttcttcatctgggt	9	10	4	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	49389016	49389016	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2620	p.S874G	0.017	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	61	0	0	31	6	16.22	-	-	-	C	49389016	T	C	49389016	3	2	253	1	0	0	0	0	1	0	0	0	6107	1522	53	5	1345	5	FRMPD2	10	49389016	Missense_Mutation	SNP	T	TCGA-AC-A2QJ-01A-12D-A19Y-09		49389016	86145731	30	23795										
GDPD4	0	genome.wustl.edu	37	chr11	76928025	76928025	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	agggcatggttggcttatccAccttcagggtgggcaatgta	14	8	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	76928025	76928025	A	G	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.1829	p.V610A	0.000	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	65	0	0	76	10	11.63	-	-	-	G	76928025	A	G	76928025	3	3	253	1	0	0	0	0	1	0	0	0	6378	174	6	5		5	GDPD4	11	76928025	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09		76928025	58078491	31	23796										
AKAP3	0	genome.wustl.edu	37	chr12	4758188	4758188	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	acaatctacccgaaaccgtcGtttcttggttagcgcttgcg	9	12	2	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	4758188	4758188	G	C	SNP	AKAP3	ENST00000541484	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKAP3	HGNC	ENSG00000111254	27	0	0	39	5	11.36	-	-	-	C	4758188	G	C	4758188	1	2	253	0	1	0	0	0	0	0	0	0	452	1160	40	3		3	AKAP3	12	4758188	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		4758188	129093707	32	23797										
PIK3C2G	0	genome.wustl.edu	37	chr12	18435399	18435401	+	In_Frame_Del	DEL	CCC	CCC	-													0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	aaagaatgctcctggggaagCcccataggaaaacatcatgg							TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	18435399	18435401	CCC	-	DEL	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	in_frame_del	c.384_386	p.P129in_frame_del	0.001:0.000:0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	36	0	0	50	7	12.28	-	-	-	-	18435401	CCC	-	18435399	7	5	253	1	0	1	0	1	0	0	0	0	11985	738	26	0	386	0	PIK3C2G	12	18435399	In_Frame_Del	DEL	CCC	TCGA-AC-A2QJ-01A-12D-A19Y-09	13677211	18435399	115416496	33	23798										
STAT2	0	genome.wustl.edu	37	chr12	56742755	56742755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gctggtctgagttgaggcctCggccaacataggaggagaac	15	9	1	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	56742755	56742755	C	T	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.1529	p.R510Q	0.909	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	20	0	0	9	3	25	-	-	-	T	56742755	C	T	56742755	3	4	253	1	0	0	0	0	1	0	0	0	15356	884	31	1	1058	1	STAT2	12	56742755	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	38307356	56742755	77109140	34	23799										
MON2	0	genome.wustl.edu	37	chr12	62902420	62902420	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ctctaaaggtttgttctatcCtttcttgaatcttgcttatg	6	8	4	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	62902420	62902420	C	T	SNP	MON2	ENST00000549378	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	MON2	HGNC	ENSG00000061987	34	0	0	31	6	16.22	-	-	-	T	62902420	C	T	62902420	1	4	253	0	1	0	0	0	0	0	0	0	9772	696	24	4		4	MON2	12	62902420	RNA	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	6159665	62902420	70949475	35	23800										
GAS2L3	0	genome.wustl.edu	37	chr12	100994239	100994239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	accaggattggctaatgtttGtcagtacgatgagtggatag	13	5	1	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	100994239	100994239	G	T	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	missense	c.98	p.C33F	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	36	0	0	35	4	10.26	-	-	-	T	100994239	G	T	100994239	3	4	253	1	0	0	0	0	1	0	0	0	6298	1377	48	4	104	4	GAS2L3	12	100994239	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	38091819	100994239	32857656	36	23801										
CHFR	0	genome.wustl.edu	37	chr12	133417908	133417908	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ctctgctgctgatgccaccaCgagccctgcccagcgctcac	9	19	2	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	133417908	133417908	C	T	SNP	CHFR	ENST00000544093	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	16	0	0	8	4	30.77	-	-	-	T	133417908	C	T	133417908	1	4	253	0	1	0	0	0	0	0	0	0	3366	551	19	1		1	CHFR	12	133417908	RNA	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	32423669	133417908	433987	37	23802										
DHRS4	0	genome.wustl.edu	37	chr14	24436602	24436602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ctctcttctgcctcacagacCacgaattcataaacactatc	3	15	4	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	14	24436602	24436602	C	A	SNP	DHRS4	ENST00000559975	human	ensembl	69_37n	1	putative	missense	c.119	p.P40Q	0.010	NULL	NULL	-	no_start_codon	DHRS4	HGNC	ENSG00000157326	14	0	0	15	6	28.57	-	-	-	A	24436602	C	A	24436602	3	1	253	1	0	0	0	0	1	0	0	0	4528	609	21	4		4	DHRS4	14	24436602	Missense_Mutation	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09		24436602	82912938	38	23803										
TYRO3	0	genome.wustl.edu	37	chr15	41865525	41865525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ggctggcagaggacatgacaGtgtgtgtggctgacttcgga	17	7	0	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	15	41865525	41865525	G	T	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	1	known	missense	c.2005	p.V669L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	25	0	0	35	6	14.63	-	-	-	T	41865525	G	T	41865525	3	4	253	1	0	0	0	0	1	0	0	0	16911	1029	36	4	2071	4	TYRO3	15	41865525	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		41865525	60665867	39	23804										
NOMO1	0	genome.wustl.edu	37	chr16	14988868	14988868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tttgcagaggaagctgcctgAacaggacatcgcacaaggat	12	9	0	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	14988868	14988868	A	G	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.3458	p.E1153G	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	60	0	0	48	6	11.11	-	-	-	G	14988868	A	G	14988868	3	3	253	1	0	0	0	0	1	0	0	0	10603	246	9	5	3576	5	NOMO1	16	14988868	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09		14988868	75365885	40	23805										
ITGAX	0	genome.wustl.edu	37	chr16	31367254	31367254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	ttcaacttggacacagaggaGctgacagccttccgtgtgga	12	10	1	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	31367254	31367254	G	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.78	p.E26D	0.043	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	28	0	0	34	4	10.53	-	-	-	T	31367254	G	T	31367254	3	4	253	1	0	0	0	0	1	0	0	0	7943	962	34	4	84	4	ITGAX	16	31367254	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	16378386	31367254	58987499	41	23806										
TLK2	0	genome.wustl.edu	37	chr17	60663562	60663562	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	agttaaataaaaactggagaGatgagaaaaaggagaattac	10	2	0	3			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	60663562	60663562	G	T	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	1	known	missense	c.1501	p.D501Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	23	0	0	27	4	12.9	-	-	-	T	60663562	G	T	60663562	3	4	253	1	0	0	0	0	1	0	0	0	16039	942	33	2	1493	2	TLK2	17	60663562	Missense_Mutation	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		60663562	20531648	42	23807										
MARCH10	0	genome.wustl.edu	37	chr17	60827660	60827660	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	agatggggaagtagcacagcAcggcgggggactcgggcacg	19	9	0	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	60827660	60827660	A	G	SNP	MARCH10	ENST00000582568	human	ensembl	69_37n	-1	putative	missense	c.395	p.V132A	0.067	NULL	NULL	-	no_start_codon	MARCH10	HGNC	ENSG00000173838	28	0	0	18	6	25	-	-	-	G	60827660	A	G	60827660	3	3	253	1	0	0	0	0	1	0	0	0	9370	174	6	5		5	MARCH10	17	60827660	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	164098	60827660	20367550	43	23808										
ACE	0	genome.wustl.edu	37	chr17	61584720	61584720	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gggcctcctggaagccctaaActtcctccaggcaagaatct	9	14	1	1			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	61584720	61584720	A	T	SNP	ACE	ENST00000490216	human	ensembl	69_37n	1	known	missense	c.2145	p.K715N	0.000	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	48	0	0	43	9	17.31	-	-	-	T	61584720	A	T	61584720	3	4	253	1	0	0	0	0	1	0	0	0	136	58	2	5		5	ACE	17	61584720	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	757060	61584720	19610490	44	23809										
CCDC40	0	genome.wustl.edu	37	chr17	78063957	78063957	+	Missense_Mutation	SNP	A	A	G													0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	gaaatattgcagaacaacacAggacgcacacaggcacgtgc							TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063957	78063957	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	1	known	missense	c.2852	p.Q951R	0.005	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0	43	8	15.69	-	-	-	G	78063957	A	G	78063957	3	3	253	1	0	0	0	0	1	0	0	0	2838	203	7	5		5	CCDC40	17	78063957	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	16479237	78063957	3131253	45	23810	221	3								
CCDC40	0	genome.wustl.edu	37	chr17	78063964	78063964	+	Silent	SNP	A	A	G													0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tgcagaacaacacaggacgcAcacaggcacgtgcacgaaca							TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063964	78063964	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	1	known	silent	c.2859	p.A953	0.003	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0	40	6	12.77	-	-	-	G	78063964	A	G	78063964	2	3	253	1	0	0	0	0	0	0	0	1	2838	174	6	5		5	CCDC40	17	78063964	Silent	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	7	78063964	3131246	46	23811	221	3								
CCDC40	0	genome.wustl.edu	37	chr17	78063966	78063966	+	Missense_Mutation	SNP	A	A	G													0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	cagaacaacacaggacgcacAcaggcacgtgcacgaacaac							TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063966	78063966	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	1	known	missense	c.2861	p.H954R	0.005	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0	42	6	12.5	-	-	-	G	78063966	A	G	78063966	3	3	253	1	0	0	0	0	1	0	0	0	2838	174	6	5		5	CCDC40	17	78063966	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09	2	78063966	3131244	47	23812	221	3								
RPTOR	0	genome.wustl.edu	37	chr17	78519122	78519122	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	acgcttttggcagctcccctCgcagcccctctggaaacgta	9	16	1	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78519122	78519122	C	T	SNP	RPTOR	ENST00000577161	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.215	-	-	-	no_errors	RPTOR	HGNC	ENSG00000141564	19	0	0	15	4	21.05	-	-	-	T	78519122	C	T	78519122	1	4	253	0	1	0	0	0	0	0	0	0	13751	899	31	1		1	RPTOR	17	78519122	RNA	SNP	C	TCGA-AC-A2QJ-01A-12D-A19Y-09	455156	78519122	2676088	48	23813										
KIAA1328	0	genome.wustl.edu	37	chr18	34664093	34664093	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	aattaatttttacaggttaaAagctcaggctctgtttaagt	7	5	2	0			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	18	34664093	34664093	A	G	SNP	KIAA1328	ENST00000435985	human	ensembl	69_37n	1	known	missense	c.386	p.K129R	0.998	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	16	0	0	20	5	20	-	-	-	G	34664093	A	G	34664093	3	3	253	1	0	0	0	0	1	0	0	0	8277	29	1	5		5	KIAA1328	18	34664093	Missense_Mutation	SNP	A	TCGA-AC-A2QJ-01A-12D-A19Y-09		34664093	43413155	49	23814										
TBC1D20	0	genome.wustl.edu	37	chr20	417255	417255	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tggaaggaggggcagctggtGccgcccactgagaggatgac	18	9	0	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	20	417255	417255	G	T	SNP	TBC1D20	ENST00000461188	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D20	HGNC	ENSG00000125875	31	0	0	27	4	12.9	-	-	-	T	417255	G	T	417255	1	4	253	0	1	0	0	0	0	0	0	0	15701	1334	46	4		4	TBC1D20	20	417255	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09		417255	62608265	50	23815										
SYS1	0	genome.wustl.edu	37	chr20	43996012	43996012	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	cctctttgagggtaataacaGaattggaaccatgccactct	8	10	2	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	20	43996012	43996012	G	T	SNP	SYS1	ENST00000479779	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SYS1	HGNC	ENSG00000204070	20	0	0	18	6	25	-	-	-	T	43996012	G	T	43996012	1	4	253	0	1	0	0	0	0	0	0	0	15556	957	33	2		2	SYS1	20	43996012	RNA	SNP	G	TCGA-AC-A2QJ-01A-12D-A19Y-09	43578757	43996012	19029508	51	23816										
FAAH2	0	genome.wustl.edu	37	chrX	57515439	57515439	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.426065162907268	0	0.451127819548872	1	1	0	tttctattaattgggtgaaaTcaagcaccagcagacaagca	8	8	2	2			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	X	57515439	57515439	T	C	SNP	FAAH2	ENST00000491179	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591	17	0	0	29	6	17.14	-	-	-	C	57515439	T	C	57515439	1	2	253	0	1	0	0	0	0	0	0	0	5394	1450	50	5		5	FAAH2	23	57515439	RNA	SNP	T	TCGA-AC-A2QJ-01A-12D-A19Y-09		57515439	97755121	52	23817										
USP48	0	genome.wustl.edu	37	chr1	22032270	22032270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aatgtaaacatgaggcccccGtggggacacaaaagagcact	11	10	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	22032270	22032270	G	A	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	silent	c.2334	p.H778	0.852	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	42	0	0	34	4	10.53	-	-	-	A	22032270	G	A	22032270	2	1	254	1	0	0	0	0	0	0	0	1	17176	1136	40	1		1	USP48	1	22032270	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		22032270	227218351	1	23818										
MEAF6	0	genome.wustl.edu	37	chr1	37959450	37959450	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	acgcacagttagcaacttgcTgggattacaacattgtcttc	8	10	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	37959450	37959450	T	C	SNP	MEAF6	ENST00000475828	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MEAF6	HGNC	ENSG00000163875	41	0	0	33	5	13.16	-	-	-	C	37959450	T	C	37959450	1	2	254	0	1	0	0	0	0	0	0	0	9492	1595	55	5		5	MEAF6	1	37959450	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	15927180	37959450	211291171	2	23819										
UROD	0	genome.wustl.edu	37	chr1	45480407	45480407	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctgagatctgcttttttctaGatcatctttgctaaggatgg	9	7	4	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	45480407	45480407	G	C	SNP	UROD	ENST00000246337	human	ensembl	69_37n	1	known	splice_site	c.775-1	e8-1	1.000	-	-	-	no_errors	UROD	HGNC	ENSG00000126088	10	0	0	9	4	30.77	-	-	-	C	45480407	G	C	45480407	5	2	254	1	0	0	0	0	0	0	1	0	17126	956	33	2	804	2	UROD	1	45480407	Splice_Site	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	7520957	45480407	203770214	3	23820										
NSUN4	0	genome.wustl.edu	37	chr1	46827769	46827769	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctgtactaaagtttgctgccCgcttaggggcttagaaggag	13	8	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	46827769	46827769	C	T	SNP	NSUN4	ENST00000307089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	41	0	0	29	4	12.12	-	-	-	T	46827769	C	T	46827769	1	4	254	0	1	0	0	0	0	0	0	0	10753	667	23	1		1	NSUN4	1	46827769	RNA	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	1347362	46827769	202422852	4	23821										
TTC22	0	genome.wustl.edu	37	chr1	55250479	55250479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gtgaagtaaactgggagctcCgagtcggcttcctcaagcac	12	11	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	55250479	55250479	C	T	SNP	TTC22	ENST00000448308	human	ensembl	69_37n	-1	putative	missense	c.434	p.R145Q	0.001	NULL	NULL	-	no_start_codon	TTC22	HGNC	ENSG00000006555	46	0	0	45	5	10	-	-	-	T	55250479	C	T	55250479	3	4	254	1	0	0	0	0	1	0	0	0	16786	667	23	1		1	TTC22	1	55250479	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	8422710	55250479	194000142	5	23822										
LINGO4	0	genome.wustl.edu	37	chr1	151773634	151773634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctgggatccctggcacggtgAtgttggggtcagaaagtgtg	17	7	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	151773634	151773634	A	G	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	missense	c.1547	p.I516T	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	29	0	0	28	5	15.15	-	-	-	G	151773634	A	G	151773634	3	3	254	1	0	0	0	0	1	0	0	0	8873	333	12	5	238	5	LINGO4	1	151773634	Missense_Mutation	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	96523155	151773634	97476987	6	23823										
FLG	0	genome.wustl.edu	37	chr1	152278093	152278093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgtcttgtgcctgctcatggCgggatccttgtcttcctcta	10	12	4	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	152278093	152278093	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.9269	p.R3090H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	106	0	0	101	23	18.55	-	-	-	T	152278093	C	T	152278093	3	4	254	1	0	0	0	0	1	0	0	0	5968	768	27	1	2920	1	FLG	1	152278093	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	504459	152278093	96972528	7	23824										
ARHGAP30	0	genome.wustl.edu	37	chr1	161018356	161018356	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgcttctgggcttctgctgtCttcaccatctccttggtctt	8	13	6	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	161018356	161018356	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	missense	c.2455	p.D819N	0.006	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	143	0	0	151	21	12.21	-	-	-	T	161018356	C	T	161018356	3	4	254	1	0	0	0	0	1	0	0	0	881	913	32	2	854	2	ARHGAP30	1	161018356	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	8740263	161018356	88232265	8	23825										
CD247	0	genome.wustl.edu	37	chr1	167403322	167403322	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tttctgcagttcctgcagaaGagggcgtggaacactgattt	12	8	1	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	167403322	167403322	G	A	SNP	CD247	ENST00000483825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	CD247	HGNC	ENSG00000198821	33	0	0	33	5	12.82	-	-	-	A	167403322	G	A	167403322	1	1	254	0	1	0	0	0	0	0	0	0	3017	957	33	2		2	CD247	1	167403322	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	6384966	167403322	81847299	9	23826										
C1orf105	0	genome.wustl.edu	37	chr1	172422209	172422209	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggcgtctcaaatgtttgcgtCgcctttaaagtagcctgtca	10	10	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	172422209	172422209	C	T	SNP	C1orf105	ENST00000367725	human	ensembl	69_37n	1	putative	silent	c.48	p.V16	0.000	NULL	NULL	-	no_errors	C1orf105	HGNC	ENSG00000180999	52	0	0	63	8	11.27	-	-	-	T	172422209	C	T	172422209	2	4	254	1	0	0	0	0	0	0	0	1	1998	899	31	1		1	C1orf105	1	172422209	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	5018887	172422209	76828412	10	23827										
PTPN7	0	genome.wustl.edu	37	chr1	202119308	202119308	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ttagttgtaaaataaacagcTctaagcagaaagggtttctt	8	5	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	202119308	202119308	T	C	SNP	PTPN7	ENST00000492977	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PTPN7	HGNC	ENSG00000143851	30	0	0	28	4	12.5	-	-	-	C	202119308	T	C	202119308	1	2	254	0	1	0	0	0	0	0	0	0	12876	1566	54	5		5	PTPN7	1	202119308	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	29697099	202119308	47131313	11	23828										
ANGEL2	0	genome.wustl.edu	37	chr1	213174137	213174137	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	caaacacttacctgtcttttCtacttttggtacctgctgta	5	11	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	213174137	213174137	C	T	SNP	ANGEL2	ENST00000366962	human	ensembl	69_37n	-1	known	missense	c.1252	p.E418K	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	38	0	0	68	9	11.69	-	-	-	T	213174137	C	T	213174137	3	4	254	1	0	0	0	0	1	0	0	0	609	922	32	2	398	2	ANGEL2	1	213174137	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	11054829	213174137	36076484	12	23829										
PROX1	0	genome.wustl.edu	37	chr1	214170480	214170480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cccgcagtctgtgagtccccGagaaagttacagagaaaaca	10	11	1	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	214170480	214170480	G	A	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.602	p.R201Q	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	22	0	0	19	9	32.14	-	-	-	A	214170480	G	A	214170480	3	1	254	1	0	0	0	0	1	0	0	0	12641	1058	37	1	604	1	PROX1	1	214170480	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	996343	214170480	35080141	13	23830										
USH2A	0	genome.wustl.edu	37	chr1	215901420	215901420	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctgttaaatgtaggatcgtcGggtctctcctggtagaccac	11	10	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	215901420	215901420	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.12018	p.P4006	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	41	0	0	42	5	10.64	-	-	-	T	215901420	G	T	215901420	2	4	254	1	0	0	0	0	0	0	0	1	17133	1103	39	3		3	USH2A	1	215901420	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	1730940	215901420	33349201	14	23831										
PARP1	0	genome.wustl.edu	37	chr1	226589972	226589972	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctgctggtcatcccaccgaaGctcagagaacccatccacct	7	17	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	1	226589972	226589972	G	T	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.229	p.L77I	1.000	pfam_Znf_PARP,pirsf_NAD_ADPRT,pfscan_Znf_PARP	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	27	0	0	26	4	13.33	-	-	-	T	226589972	G	T	226589972	3	4	254	1	0	0	0	0	1	0	0	0	11527	971	34	4	2903	4	PARP1	1	226589972	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	10688552	226589972	22660649	15	23832										
SH3YL1	0	genome.wustl.edu	37	chr2	262335	262335	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cagactaccgtctgaacatcAagtgctagcctgagcttgtt	9	11	2	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	262335	262335	A	G	SNP	SH3YL1	ENST00000468321	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH3YL1	HGNC	ENSG00000035115	41	0	0	29	4	12.12	-	-	-	G	262335	A	G	262335	1	3	254	0	1	0	0	0	0	0	0	0	14352	145	5	5		5	SH3YL1	2	262335	RNA	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09		262335	242937038	16	23833										
MYT1L	0	genome.wustl.edu	37	chr2	1926210	1926210	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tctccctcatggcctttgctCtttccgtttccaaagcgatg	7	14	3	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	1926210	1926210	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1331	p.R444T	0.991	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	46	0	0	35	6	14.63	-	-	-	G	1926210	C	G	1926210	3	3	254	1	0	0	0	0	1	0	0	0	10179	913	32	2	2287	2	MYT1L	2	1926210	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	1663875	1926210	241273163	17	23834										
MEIS1	0	genome.wustl.edu	37	chr2	66798424	66798424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gtagcccggggtggtccaatGggtgtgagtatgggacagcc	18	8	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	66798424	66798424	G	T	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	missense	c.1161	p.M387I	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	27	0	0	31	4	11.11	-	-	-	T	66798424	G	T	66798424	3	4	254	1	0	0	0	0	1	0	0	0	9538	1363	47	4		4	MEIS1	2	66798424	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	64872214	66798424	176400949	18	23835										
MALL	0	genome.wustl.edu	37	chr2	110855123	110855123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgggtgggagaggggctgctGcaggggccgggatcacacac	20	9	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	110855123	110855123	G	T	SNP	MALL	ENST00000424988	human	ensembl	69_37n	-1	known	missense	c.164	p.A55E	0.001	NULL	NULL	-	no_errors	MALL	HGNC	ENSG00000144063	26	0	0	25	5	16.67	-	-	-	T	110855123	G	T	110855123	3	4	254	1	0	0	0	0	1	0	0	0	9272	1334	46	4		4	MALL	2	110855123	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	44056699	110855123	132344250	19	23836										
GPR17	0	genome.wustl.edu	37	chr2	128409419	128409419	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctttccccagccacctccccAgcaagcaacctgaaatctca	4	19	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	128409419	128409419	A	G	SNP	GPR17	ENST00000486700	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPR17	HGNC	ENSG00000144230	22	0	0	27	5	15.62	-	-	-	G	128409419	A	G	128409419	1	3	254	0	1	0	0	0	0	0	0	0	6717	203	7	5		5	GPR17	2	128409419	RNA	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	17554296	128409419	114789954	20	23837										
ARHGEF4	0	genome.wustl.edu	37	chr2	131674285	131674285	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ttttcaaactttattgagtcAatagttctagagaaagagaa	7	4	3	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	131674285	131674285	A	G	SNP	ARHGEF4	ENST00000409359	human	ensembl	69_37n	1	putative	silent	c.1776	p.S592	0.034	NULL	NULL	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	11	0	0	16	6	27.27	-	-	-	G	131674285	A	G	131674285	2	3	254	1	0	0	0	0	0	0	0	1	910	145	5	5		5	ARHGEF4	2	131674285	Silent	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	3264866	131674285	111525088	21	23838										
POTEE	0	genome.wustl.edu	37	chr2	132022031	132022031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	accaacacagtgctgtctggCggcaccaccatgtaccctgg	10	15	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	26	0	0	16	5	23.81	-	-	-	T	132022031	C	T	132022031	2	4	254	1	0	0	0	0	0	0	0	1	12338	755	27	1		1	POTEE	2	132022031	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	347746	132022031	111177342	22	23839										
FASTKD2	0	genome.wustl.edu	37	chr2	207656460	207656460	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaagatgcagtcacatttttGaagactaaaatctattcagt	7	6	3	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	207656460	207656460	G	A	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	silent	c.2067	p.L689	0.986	pfam_RAP,smart_RAP	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	32	0	0	52	6	10.34	-	-	-	A	207656460	G	A	207656460	2	1	254	1	0	0	0	0	0	0	0	1	5732	1281	45	2		2	FASTKD2	2	207656460	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	75634429	207656460	35542913	23	23840										
CRYGA	0	genome.wustl.edu	37	chr2	209027930	209027930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	agttgaagcaagactcacatGaggaattatacggcaggatt	11	6	1	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	2	209027930	209027930	G	A	SNP	CRYGA	ENST00000304502	human	ensembl	69_37n	-1	known	missense	c.250	p.H84Y	0.008	superfamily_G_crystallin-rel	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582	49	0	0	51	8	13.33	-	-	-	A	209027930	G	A	209027930	3	1	254	1	0	0	0	0	1	0	0	0	3944	1290	45	2	282	2	CRYGA	2	209027930	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	1371470	209027930	34171443	24	23841										
TRNT1	0	genome.wustl.edu	37	chr3	3189187	3189187	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	acaaagtcagtaaaaatgttGatggtttttcaccaaagcca	7	7	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	3189187	3189187	G	A	SNP	TRNT1	ENST00000251607	human	ensembl	69_37n	1	known	missense	c.856	p.D286N	0.987	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756	22	0	0	18	4	18.18	-	-	-	A	3189187	G	A	3189187	3	1	254	1	0	0	0	0	1	0	0	0	16669	1290	45	2	878	2	TRNT1	3	3189187	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		3189187	194833243	25	23842										
MKRN2	0	genome.wustl.edu	37	chr3	12623430	12623430	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gagaaacctcggaaacagctCagttctcaaggcactgtgag	11	10	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	12623430	12623430	C	G	SNP	MKRN2	ENST00000170447	human	ensembl	69_37n	1	known	silent	c.1092	p.L364	0.991	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975	34	0	0	47	7	12.73	-	-	-	G	12623430	C	G	12623430	2	3	254	1	0	0	0	0	0	0	0	1	9678	813	29	2		2	MKRN2	3	12623430	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	9434243	12623430	185399000	26	23843										
AMIGO3	0	genome.wustl.edu	37	chr3	49756562	49756562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gttagatgatagatcgagcaGcctcaggccgctggcgttga	14	9	1	4			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	49756562	49756562	G	T	SNP	AMIGO3	ENST00000320431	human	ensembl	69_37n	-1	known	missense	c.337	p.L113M	0.141	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	AMIGO3	HGNC	ENSG00000176020	50	0	0	28	4	12.5	-	-	-	T	49756562	G	T	49756562	3	4	254	1	0	0	0	0	1	0	0	0	577	962	34	4	1181	4	AMIGO3	3	49756562	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	37133132	49756562	148265868	27	23844										
DNAH1	0	genome.wustl.edu	37	chr3	52388987	52388987	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctggacgaccacatcgtcatGacccagaatatgtcattttc	7	12	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	52388987	52388987	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.3609	p.M1203I	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	39	0	0	25	4	13.79	-	-	-	A	52388987	G	A	52388987	3	1	254	1	0	0	0	0	1	0	0	0	4633	1290	45	2	3687	2	DNAH1	3	52388987	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	2632425	52388987	145633443	28	23845										
C3orf78	0	genome.wustl.edu	37	chr3	52570843	52570843	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cagcgatttggcatctaccgGttcctgcccttcttttttgt	8	12	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	52570843	52570843	G	C	SNP	C3orf78	ENST00000477703	human	ensembl	69_37n	1	known	silent	c.72	p.R24	1.000	NULL	NULL	-	no_errors	C3orf78	HGNC	ENSG00000168273	60	0	0	70	11	13.58	-	-	-	C	52570843	G	C	52570843	2	2	254	1	0	0	0	0	0	0	0	1	2266	1248	44	4		4	C3orf78	3	52570843	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	181856	52570843	145451587	29	23846										
EPHA6	0	genome.wustl.edu	37	chr3	97365038	97365038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aaagcttgtgtgagcagtgcGagtccagctctggttatggt	14	7	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	97365038	97365038	G	A	SNP	EPHA6	ENST00000514100	human	ensembl	69_37n	1	novel	missense	c.1036	p.E346K	0.001	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	28	0	0	23	5	17.86	-	-	-	A	97365038	G	A	97365038	3	1	254	1	0	0	0	0	1	0	0	0	5208	1073	37	1		1	EPHA6	3	97365038	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	44794195	97365038	100657392	30	23847										
ABI3BP	0	genome.wustl.edu	37	chr3	100548484	100548484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	taggtttgggatgtggacgaTgagttcgttgaggcactttg	16	4	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	3	100548484	100548484	T	C	SNP	ABI3BP	ENST00000471714	human	ensembl	69_37n	-1	novel	missense	c.2504	p.H835R	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	30	0	0	28	5	15.15	-	-	-	C	100548484	T	C	100548484	3	2	254	1	0	0	0	0	1	0	0	0	91	1479	51	5		5	ABI3BP	3	100548484	Missense_Mutation	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	3183446	100548484	97473946	31	23848										
ZNF518B	0	genome.wustl.edu	37	chr4	10446457	10446457	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaaaagggtttgatgcagctCcaagactacgtaaaacactg	10	8	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	4	10446457	10446457	C	G	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.1496	p.G499A	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	26	0	0	17	3	15	-	-	-	G	10446457	C	G	10446457	3	3	254	1	0	0	0	0	1	0	0	0	18059	855	30	2	1732	2	ZNF518B	4	10446457	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		10446457	180707819	32	23849										
APBB2	0	genome.wustl.edu	37	chr4	41015823	41015823	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggtttctgcagcagcaaatcGccattcccaatgatggtgga	11	10	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	4	41015823	41015823	G	T	SNP	APBB2	ENST00000295974	human	ensembl	69_37n	-1	known	silent	c.612	p.G204	0.016	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB2	HGNC	ENSG00000163697	53	0	0	71	11	12.79	-	-	-	T	41015823	G	T	41015823	2	4	254	1	0	0	0	0	0	0	0	1	762	1074	38	3		3	APBB2	4	41015823	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	30569366	41015823	150138453	33	23850										
ARHGEF38	0	genome.wustl.edu	37	chr4	106588724	106588724	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	catcagcctcttcgtgtcttCacggccagctagtgacagtg	10	13	4	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	4	106588724	106588724	C	T	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	1	putative	missense	c.2012	p.S671L	0.991	NULL	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	24	0	0	25	6	19.35	-	-	-	T	106588724	C	T	106588724	3	4	254	1	0	0	0	0	1	0	0	0	909	841	29	2		2	ARHGEF38	4	106588724	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	65572901	106588724	84565552	34	23851										
PAPSS1	0	genome.wustl.edu	37	chr4	108552875	108552875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ttccaaagtgattaaaccagGggccatcgtcagcactttgg	10	10	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	4	108552875	108552875	G	T	SNP	PAPSS1	ENST00000265174	human	ensembl	69_37n	-1	known	missense	c.1648	p.P550T	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801	40	0	0	26	4	13.33	-	-	-	T	108552875	G	T	108552875	3	4	254	1	0	0	0	0	1	0	0	0	11507	1232	43	4	234	4	PAPSS1	4	108552875	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	1964151	108552875	82601401	35	23852										
LSM6	0	genome.wustl.edu	37	chr4	147104263	147104263	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	taagtatacccaataggccaAaaaagtactggtcatcagta	7	8	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	4	147104263	147104263	A	G	SNP	LSM6	ENST00000503982	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM6	HGNC	ENSG00000164167	27	0	0	22	4	15.38	-	-	-	G	147104263	A	G	147104263	1	3	254	0	1	0	0	0	0	0	0	0	9126	29	1	5		5	LSM6	4	147104263	RNA	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	38551388	147104263	44050013	36	23853										
SSBP2	0	genome.wustl.edu	37	chr5	80715913	80715913	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	caggagcaacttgtaataatTaaaatgtaaacgtgaaaaaa	7	4	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	5	80715913	80715913	T	G	SNP	SSBP2	ENST00000510060	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSBP2	HGNC	ENSG00000145687	32	0	0	30	4	11.76	-	-	-	G	80715913	T	G	80715913	1	3	254	0	1	0	0	0	0	0	0	0	15271	1769	61	5		5	SSBP2	5	80715913	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09		80715913	100199347	37	23854										
HLA-A	0	genome.wustl.edu	37	chr6	29910604	29910604	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggggagccccgcttcatcgcCgtgggctacgtggacgacac	15	14	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	6	29910604	29910604	C	A	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	silent	c.144	p.A48	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	47	0	0	41	5	10.87	-	-	-	A	29910604	C	A	29910604	2	1	254	1	0	0	0	0	0	0	0	1	7246	639	23	3		3	HLA-A	6	29910604	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		29910604	141204463	38	23855										
HLA-A	0	genome.wustl.edu	37	chr6	29912315	29912315	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ccatccccatcgtgggcatcAttgctggcctggttctcctt	9	15	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	6	29912315	29912315	A	C	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	missense	c.934	p.I312L	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	85	0	0	94	11	10.48	-	-	-	C	29912315	A	C	29912315	3	2	254	1	0	0	0	0	1	0	0	0	7246	217	8	5	952	5	HLA-A	6	29912315	Missense_Mutation	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	1711	29912315	141202752	39	23856										
PNRC1	0	genome.wustl.edu	37	chr6	89790641	89790641	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tcgtctccgtcccgcagcggGagccgctcgtcctgggtggc	15	16	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	6	89790641	89790641	G	C	SNP	PNRC1	ENST00000336032	human	ensembl	69_37n	1	known	missense	c.28	p.E10Q	0.885	NULL	NULL	-	no_errors	PNRC1	HGNC	ENSG00000146278	63	0	0	59	9	13.24	-	-	-	C	89790641	G	C	89790641	3	2	254	1	0	0	0	0	1	0	0	0	12248	1175	41	2	30	2	PNRC1	6	89790641	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	59878326	89790641	81324426	40	23857										
ZC3H12D	0	genome.wustl.edu	37	chr6	149782908	149782908	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gatatttgactatcgatgttAgaagtgcaccaaggaaacgt	10	6	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	6	149782908	149782908	A	G	SNP	ZC3H12D	ENST00000462655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC3H12D	HGNC	ENSG00000178199	40	0	0	54	6	10	-	-	-	G	149782908	A	G	149782908	1	3	254	0	1	0	0	0	0	0	0	0	17660	435	15	5		5	ZC3H12D	6	149782908	RNA	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	59992267	149782908	21332159	41	23858										
IKZF1	0	genome.wustl.edu	37	chr7	50367360	50367360	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgacagagtcgtgggtaagtGggtcaccagcggcctctgtg	16	9	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	7	50367360	50367360	G	T	SNP	IKZF1	ENST00000484847	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IKZF1	HGNC	ENSG00000185811	34	0	0	34	4	10.53	-	-	-	T	50367360	G	T	50367360	1	4	254	0	1	0	0	0	0	0	0	0	7668	1363	47	4		4	IKZF1	7	50367360	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		50367360	108771303	42	23859										
AP4M1	0	genome.wustl.edu	37	chr7	99702514	99702514	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cagggatccctgctgaaggtGgatgtgcagggagagattcg	17	7	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	7	99702514	99702514	G	T	SNP	AP4M1	ENST00000359593	human	ensembl	69_37n	1	known	silent	c.624	p.V208	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	58	0	0	50	7	12.28	-	-	-	T	99702514	G	T	99702514	2	4	254	1	0	0	0	0	0	0	0	1	754	1335	47	4		4	AP4M1	7	99702514	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	49335154	99702514	59436149	43	23860										
ORAI2	0	genome.wustl.edu	37	chr7	102079406	102079406	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cttagcctggctcccaccatGagtgctgagcttaacgtgcc	10	14	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	7	102079406	102079406	G	C	SNP	ORAI2	ENST00000356387	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991	48	0	0	51	11	17.46	-	-	-	C	102079406	G	C	102079406	3	2	254	1	0	0	0	0	1	0	0	0	11331	1290	45	2	5	2	ORAI2	7	102079406	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	2376892	102079406	57059257	44	23861										
TBXAS1	0	genome.wustl.edu	37	chr7	139652440	139652440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cacccacccgtttgtcgaagCcgagtggtatctatgtgaat	10	11	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	7	139652440	139652440	C	T	SNP	TBXAS1	ENST00000416849	human	ensembl	69_37n	1	known	missense	c.544	p.P182S	0.002	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377	33	0	0	35	4	10.26	-	-	-	T	139652440	C	T	139652440	3	4	254	1	0	0	0	0	1	0	0	0	15759	739	26	4	566	4	TBXAS1	7	139652440	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	37573034	139652440	19486223	45	23862										
CNTNAP2	0	genome.wustl.edu	37	chr7	148113895	148113895	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ttcagggatctttcttctaaGacggacacatttgaacctca	7	10	5	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	7	148113895	148113895	G	A	SNP	CNTNAP2	ENST00000463592	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	23	0	0	31	5	13.89	-	-	-	A	148113895	G	A	148113895	1	1	254	0	1	0	0	0	0	0	0	0	3677	957	33	2		2	CNTNAP2	7	148113895	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	8461455	148113895	11024768	46	23863										
SPAG11B	0	genome.wustl.edu	37	chr8	7320265	7320265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gcgcggtggtaagaggtcccGtttcactgcgtggcgtagca	16	10	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	7320265	7320265	G	A	SNP	SPAG11B	ENST00000398462	human	ensembl	69_37n	-1	known	missense	c.178	p.R60W	0.000	pfam_Sperm_Ag_HE2	pfam_Sperm_Ag_HE2,pfam_Defensin_beta-typ	-	no_errors	SPAG11B	HGNC	ENSG00000164871	52	0	0	50	8	13.79	-	-	-	A	7320265	G	A	7320265	3	1	254	1	0	0	0	0	1	0	0	0	15068	1144	40	1	541	1	SPAG11B	8	7320265	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		7320265	139043757	47	23864										
DLC1	0	genome.wustl.edu	37	chr8	12957134	12957134	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tagaggatgtcgtccagctcGgggaagatgtcctcgttctc	13	10	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	12957134	12957134	G	A	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	silent	c.2712	p.P904	0.003	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	50	0	0	38	8	17.39	-	-	-	A	12957134	G	A	12957134	2	1	254	1	0	0	0	0	0	0	0	1	4586	1103	39	1		1	DLC1	8	12957134	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	5636869	12957134	133406888	48	23865										
ASPH	0	genome.wustl.edu	37	chr8	62475413	62475413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tagttgaactaatctctgcaGggtaagcagggaacctctca	10	9	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	62475413	62475413	G	T	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.1327	p.L443M	0.998	pfscan_TPR-contain_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	38	0	0	30	4	11.76	-	-	-	T	62475413	G	T	62475413	3	4	254	1	0	0	0	0	1	0	0	0	1057	991	35	4	981	4	ASPH	8	62475413	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	49518279	62475413	83888609	49	23866										
MMP16	0	genome.wustl.edu	37	chr8	89081730	89081730	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gagccaaccatcttggattaTagatagagtgtctcccttca	8	10	3	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	89081730	89081730	T	C	SNP	MMP16	ENST00000544227	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MMP16	HGNC	ENSG00000156103	31	0	0	22	3	12	-	-	-	C	89081730	T	C	89081730	1	2	254	0	1	0	0	0	0	0	0	0	9726	1406	49	5		5	MMP16	8	89081730	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	26606317	89081730	57282292	50	23867										
SNTB1	0	genome.wustl.edu	37	chr8	121583603	121583603	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	agataatgttcacggatgagGactgtggatgcaaagtacag	13	5	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	121583603	121583603	G	A	SNP	SNTB1	ENST00000519177	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNTB1	HGNC	ENSG00000172164	45	0	0	30	5	13.89	-	-	-	A	121583603	G	A	121583603	1	1	254	0	1	0	0	0	0	0	0	0	14961	1189	41	2		2	SNTB1	8	121583603	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	32501873	121583603	24780419	51	23868										
ARHGAP39	0	genome.wustl.edu	37	chr8	145758691	145758691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggcatgccggatctcctccaCgttgggcttcttcagcccct	10	16	3	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	8	145758691	145758691	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	missense	c.2707	p.V903M	0.948	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	53	0	0	56	10	15.15	-	-	-	T	145758691	C	T	145758691	3	4	254	1	0	0	0	0	1	0	0	0	886	536	19	1	653	1	ARHGAP39	8	145758691	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	24175088	145758691	605331	52	23869										
TAF1L	0	genome.wustl.edu	37	chr9	32632045	32632045	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgagacagtgtccagtggcaGaagacttaaggctagtcatg	13	7	1	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	9	32632045	32632045	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3533	p.S1178F	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	47	0	0	61	11	15.07	-	-	-	A	32632045	G	A	32632045	3	1	254	1	0	0	0	0	1	0	0	0	15615	942	33	2	1951	2	TAF1L	9	32632045	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		32632045	108581386	53	23870										
TLE4	0	genome.wustl.edu	37	chr9	82286352	82286352	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	agagagcctcttttattttcGtgtcagattatctgtaaaat	7	6	3	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	9	82286352	82286352	G	A	SNP	TLE4	ENST00000493163	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.641	-	-	-	no_errors	TLE4	HGNC	ENSG00000106829	10	0	0	8	5	38.46	-	-	-	A	82286352	G	A	82286352	1	1	254	0	1	0	0	0	0	0	0	0	16036	1160	40	1		1	TLE4	9	82286352	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	49654307	82286352	58927079	54	23871										
TDRD7	0	genome.wustl.edu	37	chr9	100223030	100223030	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tggttgaactgagcaacacaAatgaagtggttatcaggcaa	11	6	1	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	9	100223030	100223030	A	T	SNP	TDRD7	ENST00000355295	human	ensembl	69_37n	1	known	missense	c.1426	p.N476Y	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	32	0	0	20	3	13.04	-	-	-	T	100223030	A	T	100223030	3	4	254	1	0	0	0	0	1	0	0	0	15830	14	1	5	1448	5	TDRD7	9	100223030	Missense_Mutation	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	17936678	100223030	40990401	55	23872										
OR13C5	0	genome.wustl.edu	37	chr9	107361642	107361642	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	actcaagtcttgggtgaccaGaaagtcccttcagaaaaaat	8	9	3	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	9	107361642	107361642	G	A	SNP	OR13C5	ENST00000374779	human	ensembl	69_37n	-1	known	missense	c.53	p.S18F	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800	34	0	0	23	4	14.81	-	-	-	A	107361642	G	A	107361642	3	1	254	1	0	0	0	0	1	0	0	0	11010	942	33	2	905	2	OR13C5	9	107361642	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	7138612	107361642	33851789	56	23873										
AIF1L	0	genome.wustl.edu	37	chr9	133981629	133981629	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tttcatgttcccagcacagcTgcttgctggctctgctgttt	9	12	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	9	133981629	133981629	T	C	SNP	AIF1L	ENST00000372309	human	ensembl	69_37n	1	known	missense	c.148	p.C50R	0.001	NULL	pfscan_EF_HAND_2	-	no_errors	AIF1L	HGNC	ENSG00000126878	58	0	0	36	5	12.2	-	-	-	C	133981629	T	C	133981629	3	2	254	1	0	0	0	0	1	0	0	0	425	1580	55	5	158	5	AIF1L	9	133981629	Missense_Mutation	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	26619987	133981629	7231802	57	23874										
FRMD4A	0	genome.wustl.edu	37	chr10	13705482	13705482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaacaagggcatctgagaggGagctgtcttcactggcaatg	14	8	3	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	10	13705482	13705482	G	T	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.1631	p.S544Y	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	70	0	0	36	4	10	-	-	-	T	13705482	G	T	13705482	3	4	254	1	0	0	0	0	1	0	0	0	6100	1174	41	2	1512	2	FRMD4A	10	13705482	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		13705482	121829265	58	23875										
ANO9	0	genome.wustl.edu	37	chr11	428823	428823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aatgagctgaagtgccatttCctcctggggagagcaccggg	14	10	0	3			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	11	428823	428823	C	T	SNP	ANO9	ENST00000332826	human	ensembl	69_37n	-1	known	missense	c.919	p.E307K	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	50	0	0	45	9	16.67	-	-	-	T	428823	C	T	428823	3	4	254	1	0	0	0	0	1	0	0	0	703	864	30	2	1477	2	ANO9	11	428823	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		428823	134577693	59	23876										
MUC5B	0	genome.wustl.edu	37	chr11	1272881	1272881	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cgtgtccactgtgtcctcctCagtcctcaccaccctgagac	7	18	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	11	1272881	1272881	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	nonsense	c.14780	p.S4927*	0.003	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	32	0	0	33	5	13.16	-	-	-	G	1272881	C	G	1272881	4	3	254	1	0	0	0	0	0	1	0	0	10051	838	29	2	14902	2	MUC5B	11	1272881	Nonsense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	844058	1272881	133733635	60	23877										
LSP1	0	genome.wustl.edu	37	chr11	1891771	1891771	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tggtgtgggggtgtcaggaaGagggcctggctgctgggtgc	22	6	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	11	1891771	1891771	G	A	SNP	LSP1	ENST00000418975	human	ensembl	69_37n	1	putative	missense	c.83	p.R28K	0.002	NULL	prints_Lymphspecific	-	no_stop_codon	LSP1	HGNC	ENSG00000130592	40	0	0	39	7	15.22	-	-	-	A	1891771	G	A	1891771	3	1	254	1	0	0	0	0	1	0	0	0	9129	957	33	2		2	LSP1	11	1891771	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	618890	1891771	133114745	61	23878										
OR8B2	0	genome.wustl.edu	37	chr11	124253147	124253147	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gtgacaatgtagatcactagAaacaggaaaaagaggggttg	13	4	1	4			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	11	124253147	124253147	A	G	SNP	OR8B2	ENST00000375013	human	ensembl	69_37n	-1	known	silent	c.93	p.F31	0.003	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293	61	0	0	56	7	11.11	-	-	-	G	124253147	A	G	124253147	2	3	254	1	0	0	0	0	0	0	0	1	11300	243	9	5		5	OR8B2	11	124253147	Silent	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	122361376	124253147	10753369	62	23879										
PRR4	0	genome.wustl.edu	37	chr12	11324176	11324176	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tatttagagccatgactaagCtaacggcctccggggccagc	11	12	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	12	11324176	11324176	C	A	SNP	PRR4	ENST00000535024	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRR4	HGNC	ENSG00000111215	32	0	0	29	6	17.14	-	-	-	A	11324176	C	A	11324176	1	1	254	0	1	0	0	0	0	0	0	0	12679	812	28	4		4	PRR4	12	11324176	RNA	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		11324176	122527719	63	23880										
SLC2A13	0	genome.wustl.edu	37	chr12	40422143	40422143	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tcctcttcaatgttgtttttGatgctatcatattcctcatc	4	10	4	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	12	40422143	40422143	G	A	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	silent	c.885	p.I295	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	56	0	0	39	9	18.75	-	-	-	A	40422143	G	A	40422143	2	1	254	1	0	0	0	0	0	0	0	1	14631	1280	45	2		2	SLC2A13	12	40422143	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	29097967	40422143	93429752	64	23881										
SMUG1	0	genome.wustl.edu	37	chr12	54575800	54575800	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaaggaccttttgctccagtCcaggagatgtgttgtcatct	11	9	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	12	54575800	54575800	C	A	SNP	SMUG1	ENST00000505662	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMUG1	HGNC	ENSG00000123415	35	0	0	35	5	12.5	-	-	-	A	54575800	C	A	54575800	1	1	254	0	1	0	0	0	0	0	0	0	14907	870	30	2		2	SMUG1	12	54575800	RNA	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	14153657	54575800	79276095	65	23882										
BRAP	0	genome.wustl.edu	37	chr12	112103450	112103450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cccctgcactcacgtggtatCgtcccagcgctgtagacact	9	16	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	12	112103450	112103450	C	T	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.889	p.D297N	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	57	0	0	62	7	10.14	-	-	-	T	112103450	C	T	112103450	3	4	254	1	0	0	0	0	1	0	0	0	1505	884	31	1	917	1	BRAP	12	112103450	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	57527650	112103450	21748445	66	23883										
PLBD2	0	genome.wustl.edu	37	chr12	113810596	113810596	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gatggagtcaaacccagactCaccttactggcaccaggtga	10	12	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	12	113810596	113810596	C	T	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	missense	c.527	p.S176L	0.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	40	0	0	31	7	18.42	-	-	-	T	113810596	C	T	113810596	3	4	254	1	0	0	0	0	1	0	0	0	12100	838	29	2	537	2	PLBD2	12	113810596	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	1707146	113810596	20041299	67	23884										
KCNRG	0	genome.wustl.edu	37	chr13	50594417	50594417	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	atgtcctcggcttactgattGacactttattaaaggaaggc	9	8	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	13	50594417	50594417	G	C	SNP	KCNRG	ENST00000312942	human	ensembl	69_37n	1	known	missense	c.646	p.D216H	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCNRG	HGNC	ENSG00000198553	44	0	0	47	10	17.54	-	-	-	C	50594417	G	C	50594417	3	2	254	1	0	0	0	0	1	0	0	0	8141	1290	45	2	754	2	KCNRG	13	50594417	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		50594417	64575461	68	23885										
PCID2	0	genome.wustl.edu	37	chr13	113845059	113845059	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	taaagcaaaaataacaatggTtgtgggattatagcatgtgt	10	3	0	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	13	113845059	113845059	T	C	SNP	PCID2	ENST00000491548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCID2	HGNC	ENSG00000126226	14	0	0	6	6	50	-	-	-	C	113845059	T	C	113845059	1	2	254	0	1	0	0	0	0	0	0	0	11652	1740	60	5		5	PCID2	13	113845059	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	63250642	113845059	1324819	69	23886										
AP1G2	0	genome.wustl.edu	37	chr14	24035577	24035577	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tcagcagagcccatggtgctCaaagtgcacaaggccaggcc	12	13	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	14	24035577	24035577	C	G	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.381	p.L127F	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	35	0	0	30	4	11.76	-	-	-	G	24035577	C	G	24035577	3	3	254	1	0	0	0	0	1	0	0	0	734	825	29	2	2052	2	AP1G2	14	24035577	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		24035577	83313963	70	23887										
TINF2	0	genome.wustl.edu	37	chr14	24709337	24709337	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	agtcccctatggtaatgacgGagctgcacagagacggagga	14	9	0	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	14	24709337	24709337	G	C	SNP	TINF2	ENST00000267415	human	ensembl	69_37n	-1	known	missense	c.1154	p.S385C	0.542	NULL	NULL	-	no_errors	TINF2	HGNC	ENSG00000092330	37	0	0	49	6	10.91	-	-	-	C	24709337	G	C	24709337	3	2	254	1	0	0	0	0	1	0	0	0	16018	1174	41	2	209	2	TINF2	14	24709337	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	673760	24709337	82640203	71	23888										
ADAM21	0	genome.wustl.edu	37	chr14	70924335	70924335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctcccagcatttcacttcccCggaagtggtgatccccttga	8	15	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	14	70924335	70924335	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	missense	c.119	p.P40L	0.493	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	36	0	0	36	6	14.29	-	-	-	T	70924335	C	T	70924335	3	4	254	1	0	0	0	0	1	0	0	0	243	652	23	1	121	1	ADAM21	14	70924335	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	46214998	70924335	36425205	72	23889										
ARIH1	0	genome.wustl.edu	37	chr15	72875842	72875842	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gtacaacagtattctaggccAccaacaaaagtgtgacagac	8	10	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	15	72875842	72875842	A	G	SNP	ARIH1	ENST00000562891	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	ARIH1	HGNC	ENSG00000166233	12	0	0	11	6	35.29	-	-	-	G	72875842	A	G	72875842	1	3	254	0	1	0	0	0	0	0	0	0	925	174	6	5		5	ARIH1	15	72875842	RNA	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09		72875842	29655550	73	23890										
PLK1	0	genome.wustl.edu	37	chr16	23701345	23701345	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	actatggtggacaagctgctGagctcacgctcggccagcaa	12	12	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	16	23701345	23701345	G	A	SNP	PLK1	ENST00000300093	human	ensembl	69_37n	1	known	silent	c.1773	p.L591	0.994	NULL	pfam_Prot_kinase_cat_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK1	HGNC	ENSG00000166851	46	0	0	52	13	20	-	-	-	A	23701345	G	A	23701345	2	1	254	1	0	0	0	0	0	0	0	1	12168	1277	45	2		2	PLK1	16	23701345	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		23701345	66653408	74	23891										
ZNF48	0	genome.wustl.edu	37	chr16	30409062	30409062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	acaccagcggactcatagtgGggagaagccctatagagccc	12	12	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	16	30409062	30409062	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	missense	c.491	p.G164E	0.958	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	37	0	0	28	7	20	-	-	-	A	30409062	G	A	30409062	3	1	254	1	0	0	0	0	1	0	0	0	18030	1232	43	4	497	4	ZNF48	16	30409062	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	6707717	30409062	59945691	75	23892										
GPR114	0	genome.wustl.edu	37	chr16	57624549	57624549	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggagggggcactgtttctaaGaagagtgatgataccaccgt	14	7	1	4			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	16	57624549	57624549	G	A	SNP	GPR114	ENST00000569839	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	GPR114	HGNC	ENSG00000159618	38	0	0	35	4	10.26	-	-	-	A	57624549	G	A	57624549	1	1	254	0	1	0	0	0	0	0	0	0	6681	957	33	2		2	GPR114	16	57624549	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	27215487	57624549	32730204	76	23893										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	65	0	0	44	9	16.98	-	-	-	T	68772218	C	T	68772218	4	4	254	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	11147669	68772218	21582535	77	23894										
NTN1	0	genome.wustl.edu	37	chr17	9086708	9086708	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aatgcagggggcccaggagcTgggcgtgggggagaatcaca	19	8	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	9086708	9086708	T	C	SNP	NTN1	ENST00000436734	human	ensembl	69_37n	1	putative	missense	c.415	p.W139R	0.000	NULL	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	-	no_start_codon	NTN1	HGNC	ENSG00000065320	47	0	0	23	6	20.69	-	-	-	C	9086708	T	C	9086708	3	2	254	1	0	0	0	0	1	0	0	0	10773	1595	55	5		5	NTN1	17	9086708	Missense_Mutation	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09		9086708	72108502	78	23895										
TAF15	0	genome.wustl.edu	37	chr17	34147185	34147185	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cagagctattctggctatggGcaaacgactgattcctctta	9	10	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	34147185	34147185	G	A	SNP	TAF15	ENST00000588240	human	ensembl	69_37n	1	known	silent	c.117	p.G39	1.000	NULL	pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	TAF15	HGNC	ENSG00000172660	72	0	0	55	19	25.33	-	-	-	A	34147185	G	A	34147185	2	1	254	1	0	0	0	0	0	0	0	1	15610	1190	42	4		4	TAF15	17	34147185	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	25060477	34147185	47048025	79	23896										
GPR179	0	genome.wustl.edu	37	chr17	36490694	36490694	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gcccgtgtggcgtagcagagGaagctgccccagcacagcag	15	13	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	36490694	36490694	G	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.1677	p.F559L	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	29	0	0	28	4	12.5	-	-	-	T	36490694	G	T	36490694	3	4	254	1	0	0	0	0	1	0	0	0	6724	1165	41	2	5442	2	GPR179	17	36490694	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	2343509	36490694	44704516	80	23897										
ACSF2	0	genome.wustl.edu	37	chr17	48549940	48549940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggacaagtggtattggacagGgtgagaaggcagggcggggt	21	4	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	48549940	48549940	G	T	SNP	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	missense	c.1475	p.G492V	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	31	0	0	16	3	15.79	-	-	-	T	48549940	G	T	48549940	3	4	254	1	0	0	0	0	1	0	0	0	175	1246	43	4	1521	4	ACSF2	17	48549940	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	12059246	48549940	32645270	81	23898										
TBX2	0	genome.wustl.edu	37	chr17	59486624	59486624	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	atctatattgtacagggctgGgggggcccttggctgcggga	17	8	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	59486624	59486624	G	C	SNP	TBX2	ENST00000586986	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBX2	HGNC	ENSG00000121068	35	0	0	27	4	12.9	-	-	-	C	59486624	G	C	59486624	1	2	254	0	1	0	0	0	0	0	0	0	15750	1247	43	4		4	TBX2	17	59486624	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	10936684	59486624	21708586	82	23899										
CCDC57	0	genome.wustl.edu	37	chr17	80092131	80092131	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	acttctggattcctcttgtgTtgaatgcaaacactcagaaa	7	9	3	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	17	80092131	80092131	T	C	SNP	CCDC57	ENST00000483145	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC57	HGNC	ENSG00000176155	32	0	0	27	4	12.9	-	-	-	C	80092131	T	C	80092131	1	2	254	0	1	0	0	0	0	0	0	0	2854	1740	60	5		5	CCDC57	17	80092131	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	20605507	80092131	1103079	83	23900										
FBXO17	0	genome.wustl.edu	37	chr19	39437131	39437131	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ccagtcagccacacagatctCaatctgggcgctgtccagca	9	15	3	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	19	39437131	39437131	C	T	SNP	FBXO17	ENST00000448145	human	ensembl	69_37n	-1	known	missense	c.43	p.E15K	0.998	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pirsf_Ser-tRNA-synth_IIa,pfam_F-box-assoc_dom,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_Galactose-bd-like,superfamily_tRNA-bd_arm,prints_Ser-tRNA-synth_IIa,pfscan_F-box-assoc_dom,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	FBXO17	HGNC	ENSG00000104835	26	0	0	31	4	11.43	-	-	-	T	39437131	C	T	39437131	3	4	254	1	0	0	0	0	1	0	0	0	5776	835	29	2	310	2	FBXO17	19	39437131	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		39437131	19691852	84	23901										
ZNF574	0	genome.wustl.edu	37	chr19	42584206	42584206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aaaggccttgcagctgacccGgcaccaacgttttgtgcatc	10	13	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	19	42584206	42584206	G	T	SNP	ZNF574	ENST00000222339	human	ensembl	69_37n	1	known	missense	c.1718	p.R573L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732	24	0	0	26	4	12.9	-	-	-	T	42584206	G	T	42584206	3	4	254	1	0	0	0	0	1	0	0	0	18102	1116	39	3	1450	3	ZNF574	19	42584206	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	3147075	42584206	16544777	85	23902										
ZNF776	0	genome.wustl.edu	37	chr19	58265037	58265037	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tttgtccagcttgagattacTccaacaagaggacattcaca	7	10	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	19	58265037	58265037	T	A	SNP	ZNF776	ENST00000317178	human	ensembl	69_37n	1	known	missense	c.539	p.L180H	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	27	0	0	35	7	16.67	-	-	-	A	58265037	T	A	58265037	3	1	254	1	0	0	0	0	1	0	0	0	18242	1551	54	5	549	5	ZNF776	19	58265037	Missense_Mutation	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	15680831	58265037	863946	86	23903										
FKBP1A	0	genome.wustl.edu	37	chr20	1350709	1350709	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ggaggcaccagatccctccaTggcagatctgttggggacag	14	11	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	20	1350709	1350709	T	C	SNP	FKBP1A	ENST00000460490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	FKBP1A	HGNC	ENSG00000088832	22	0	0	18	4	18.18	-	-	-	C	1350709	T	C	1350709	1	2	254	0	1	0	0	0	0	0	0	0	5952	1479	51	5		5	FKBP1A	20	1350709	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09		1350709	61674811	87	23904										
WISP2	0	genome.wustl.edu	37	chr20	43356156	43356156	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	agaggtgcaagacctagtccCctttcctctaactcactgcc	7	15	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	20	43356156	43356156	C	T	SNP	WISP2	ENST00000471629	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	42	0	0	49	9	15.25	-	-	-	T	43356156	C	T	43356156	1	4	254	0	1	0	0	0	0	0	0	0	17470	638	22	4		4	WISP2	20	43356156	RNA	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	42005447	43356156	19669364	88	23905										
LAMA5	0	genome.wustl.edu	37	chr20	60902992	60902992	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ccgcctcgtgacagtcacagGggcggcagcgggggtagcca	17	13	1	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	20	60902992	60902992	G	T	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.4727	p.P1576H	0.870	pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	24	0	0	25	4	13.79	-	-	-	T	60902992	G	T	60902992	3	4	254	1	0	0	0	0	1	0	0	0	8663	1232	43	4	6540	4	LAMA5	20	60902992	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	17546836	60902992	2122528	89	23906										
BIRC7	0	genome.wustl.edu	37	chr20	61869661	61869661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	cagggtggcgggaggaggggGcccaaccctgacccccgggg	20	13	0	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	20	61869661	61869661	G	A	SNP	BIRC7	ENST00000395306	human	ensembl	69_37n	1	putative	silent	c.102	p.G34	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197	9	0	0	9	14	60.87	-	-	-	A	61869661	G	A	61869661	2	1	254	1	0	0	0	0	0	0	0	1	1444	1218	42	4		4	BIRC7	20	61869661	Silent	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	966669	61869661	1155859	90	23907										
IFNAR1	0	genome.wustl.edu	37	chr21	34721850	34721850	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aaaacacttcaaatgctgagGtaaaaagactgtatagtata	7	5	1	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	21	34721850	34721850	G	T	SNP	IFNAR1	ENST00000270139	human	ensembl	69_37n	1	known	splice_site	c.1143+1	e8+1	1.000	-	-	-	no_errors	IFNAR1	HGNC	ENSG00000142166	34	0	0	21	3	12.5	-	-	-	T	34721850	G	T	34721850	5	4	254	1	0	0	0	0	0	0	1	0	7598	1275	44	4	1174	4	IFNAR1	21	34721850	Splice_Site	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		34721850	13408045	91	23908										
RUNX1	0	genome.wustl.edu	37	chr21	36421175	36421175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tgggtacgaaggaaatgactCaaatatgctgtctgaagcca	11	7	2	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	21	36421175	36421175	C	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.22	p.E8Q	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	33	0	0	31	4	11.43	-	-	-	G	36421175	C	G	36421175	3	3	254	1	0	0	0	0	1	0	0	0	13832	835	29	2	1501	2	RUNX1	21	36421175	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	1699325	36421175	11708720	92	23909										
TSSK2	0	genome.wustl.edu	37	chr22	19119656	19119656	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	acctgcgagtgcaaggacctCatctaccgcatgctgcagcc	10	15	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	22	19119656	19119656	C	T	SNP	TSSK2	ENST00000399635	human	ensembl	69_37n	1	known	silent	c.744	p.L248	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK2	HGNC	ENSG00000206203	26	0	0	26	4	13.33	-	-	-	T	19119656	C	T	19119656	2	4	254	1	0	0	0	0	0	0	0	1	16765	813	29	2		2	TSSK2	22	19119656	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09		19119656	32184910	93	23910										
KLHL22	0	genome.wustl.edu	37	chr22	20847472	20847472	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gtgcctctgctctcttgggaAgggataaatggcagctactc	12	10	2	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	22	20847472	20847472	A	T	SNP	KLHL22	ENST00000443285	human	ensembl	69_37n	-1	putative	missense	c.32	p.L11H	0.063	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_stop_codon:bad_bp_length_for_coding_region	KLHL22	HGNC	ENSG00000099910	29	0	0	31	4	11.43	-	-	-	T	20847472	A	T	20847472	3	4	254	1	0	0	0	0	1	0	0	0	8430	87	3	5		5	KLHL22	22	20847472	Missense_Mutation	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	1727816	20847472	30457094	94	23911										
SMC1B	0	genome.wustl.edu	37	chr22	45741354	45741354	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctttacctcaggatagatgcCgatcagcgcgtcggctctgg	12	12	3	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	22	45741354	45741354	C	G	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	missense	c.3592	p.G1198R	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	23	0	0	18	4	17.39	-	-	-	G	45741354	C	G	45741354	3	3	254	1	0	0	0	0	1	0	0	0	14871	652	23	3	123	3	SMC1B	22	45741354	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	24893882	45741354	5563212	95	23912										
TCEANC	0	genome.wustl.edu	37	chrX	13682577	13682577	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tcaaccacaaaagtcaccctGgaactcatcccgcagttaga	6	14	3	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	13682577	13682577	G	A	SNP	TCEANC	ENST00000490617	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCEANC	HGNC	ENSG00000176896	73	0	0	99	16	13.91	-	-	-	A	13682577	G	A	13682577	1	1	254	0	1	0	0	0	0	0	0	0	15773	1363	47	4		4	TCEANC	23	13682577	RNA	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09		13682577	141587983	96	23913										
PCYT1B	0	genome.wustl.edu	37	chrX	24608283	24608283	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaatttgtgggtgagatcatCactgcaaactaaaacaggca	10	7	2	1			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	24608283	24608283	C	T	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.343	p.D115N	1.000	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	38	0	0	39	6	13.33	-	-	-	T	24608283	C	T	24608283	3	4	254	1	0	0	0	0	1	0	0	0	11684	826	29	2	823	2	PCYT1B	23	24608283	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	10925706	24608283	130662277	97	23914										
ATP7A	0	genome.wustl.edu	37	chrX	77271371	77271371	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	tctatggtagatgagtccctCatcacaggtatgttctttca	8	9	5	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	77271371	77271371	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	silent	c.2619	p.L873	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	38	0	0	40	8	16.67	-	-	-	T	77271371	C	T	77271371	2	4	254	1	0	0	0	0	0	0	0	1	1194	813	29	2		2	ATP7A	23	77271371	Silent	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	52663088	77271371	77999189	98	23915										
ARMCX1	0	genome.wustl.edu	37	chrX	100808302	100808302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aggcaaaggggctagggtggGtaccatctctgggaacagga	17	7	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	100808302	100808302	G	T	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.389	p.G130V	0.002	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	50	0	0	36	4	10	-	-	-	T	100808302	G	T	100808302	3	4	254	1	0	0	0	0	1	0	0	0	963	1261	44	4	391	4	ARMCX1	23	100808302	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	23536931	100808302	54462258	99	23916										
TBC1D8B	0	genome.wustl.edu	37	chrX	106117064	106117064	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	aggaacctcagtggtcatttGcatttgaacagattcttgca	9	8	3	2			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	106117064	106117064	G	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.3232	p.A1078S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	38	0	0	34	8	18.6	-	-	-	T	106117064	G	T	106117064	3	4	254	1	0	0	0	0	1	0	0	0	15721	1319	46	4	3380	4	TBC1D8B	23	106117064	Missense_Mutation	SNP	G	TCGA-AC-A3BB-01A-21D-A19Y-09	5308762	106117064	49153496	100	23917										
UTP14A	0	genome.wustl.edu	37	chrX	129055208	129055208	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gaacagttgtctaagaacaaAgaactgacacagaaactcca	7	9	1	4			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	129055208	129055208	A	G	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	silent	c.993	p.K331	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	45	0	0	36	6	14.29	-	-	-	G	129055208	A	G	129055208	2	3	254	1	0	0	0	0	0	0	0	1	17192	69	3	5		5	UTP14A	23	129055208	Silent	SNP	A	TCGA-AC-A3BB-01A-21D-A19Y-09	22938144	129055208	26215352	101	23918										
SLC25A14	0	genome.wustl.edu	37	chrX	129498836	129498836	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	ctggtacgtatggcctaaatTcccttgtctctcctattatc	6	12	1	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	129498836	129498836	T	A	SNP	SLC25A14	ENST00000471795	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078	21	0	0	23	5	17.24	-	-	-	A	129498836	T	A	129498836	1	1	254	0	1	0	0	0	0	0	0	0	14565	1798	62	5		5	SLC25A14	23	129498836	RNA	SNP	T	TCGA-AC-A3BB-01A-21D-A19Y-09	443628	129498836	25771724	102	23919										
HCFC1	0	genome.wustl.edu	37	chrX	153218022	153218022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.271844660194175	28	1.37006475379095e-08	3.42663962136579	4.05602240896359	3.22638146167558	0.00293234230156467	0.0573566154186049	20	gatggccagggcctgggcttCctccgtggctgcggcctggg	18	13	0	0			TCGA-AC-A3BB-01A-21D-A19Y-09	TCGA-AC-A3BB-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69990efb-cbdc-4364-b4c0-53a3a921b3ec	40c00f60-3ff1-4cb7-a1ed-657bab88f84d	X	153218022	153218022	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.4885	p.E1629K	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	43	0	0	38	9	19.15	-	-	-	T	153218022	C	T	153218022	3	4	254	1	0	0	0	0	1	0	0	0	7042	864	30	2	1254	2	HCFC1	23	153218022	Missense_Mutation	SNP	C	TCGA-AC-A3BB-01A-21D-A19Y-09	23719186	153218022	2052538	103	23920										
TNFRSF25	0	genome.wustl.edu	37	chr1	6525171	6525171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gctcatcacaggcctggcagCgggcacattcagaattatgg	12	11	3	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	1	6525171	6525171	C	T	SNP	TNFRSF25	ENST00000377782	human	ensembl	69_37n	-1	known	missense	c.272	p.R91H	1.000	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_25	-	no_errors	TNFRSF25	HGNC	ENSG00000215788	41	0	0	19	17	47.22	-	-	-	T	6525171	C	T	6525171	3	4	255	1	0	0	0	0	1	0	0	0	16391	768	27	1	1044	1	TNFRSF25	1	6525171	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		6525171	242725450	1	23921										
CROCC	0	genome.wustl.edu	37	chr1	17249172	17249172	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ccacagacactggagagcagCgtcctgtgccaggagaaagg	14	11	0	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	1	17249172	17249172	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.75	p.S25	0.031	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	148	0	0	49	19	27.54	-	-	-	T	17249172	C	T	17249172	2	4	255	1	0	0	0	0	0	0	0	1	3923	767	27	1		1	CROCC	1	17249172	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	10724001	17249172	232001449	2	23922										
CCDC30	0	genome.wustl.edu	37	chr1	42948585	42948585	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	aaaaaaaaaacactgagaaaCaagtctttaagataaacaca	4	6	1	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	1	42948585	42948585	C	A	SNP	CCDC30	ENST00000475614	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	CCDC30	HGNC	ENSG00000186409	14	0	0	12	4	25	-	-	-	A	42948585	C	A	42948585	1	1	255	0	1	0	0	0	0	0	0	0	2831	493	17	4		4	CCDC30	1	42948585	RNA	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	25699413	42948585	206302036	3	23923										
PBX1	0	genome.wustl.edu	37	chr1	164610617	164610617	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gacctggaggccatccagtgAcctagtctgggccagtaaag	13	11	1	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	1	164610617	164610617	A	G	SNP	PBX1	ENST00000474046	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PBX1	HGNC	ENSG00000185630	27	0	0	17	24	58.54	-	-	-	G	164610617	A	G	164610617	1	3	255	0	1	0	0	0	0	0	0	0	11565	290	10	5		5	PBX1	1	164610617	RNA	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	121662032	164610617	84640004	4	23924										
FMN2	0	genome.wustl.edu	37	chr1	240255915	240255915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tgtggaaactgcagcaggggCgcaggatggacaaaggacca	16	8	0	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	1	240255915	240255915	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.506	p.A169V	0.992	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	77	0	0	89	29	24.17	-	-	-	T	240255915	C	T	240255915	3	4	255	1	0	0	0	0	1	0	0	0	5996	768	27	1	508	1	FMN2	1	240255915	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	75645298	240255915	8994706	5	23925										
GREB1	0	genome.wustl.edu	37	chr2	11758591	11758591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	caggcacagtcccgggccgaCgccccagcccgactgtagcc	12	19	0	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	2	11758591	11758591	C	T	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	missense	c.3590	p.T1197M	0.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	74	0	0	40	7	14.89	-	-	-	T	11758591	C	T	11758591	3	4	255	1	0	0	0	0	1	0	0	0	6811	536	19	1	3780	1	GREB1	2	11758591	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		11758591	231440782	6	23926										
GTF3C2	0	genome.wustl.edu	37	chr2	27558252	27558252	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	agagggaagaagggggagatAaaaggaaatgtgctgaaaga	17	1	0	5			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	2	27558252	27558252	A	G	SNP	GTF3C2	ENST00000454704	human	ensembl	69_37n	-1	putative	missense	c.44	p.L15S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GTF3C2	HGNC	ENSG00000115207	25	0	0	25	6	19.35	-	-	-	G	27558252	A	G	27558252	3	3	255	1	0	0	0	0	1	0	0	0	6924	377	13	5		5	GTF3C2	2	27558252	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	15799661	27558252	215641121	7	23927										
UBR3	0	genome.wustl.edu	37	chr2	170732399	170732399	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tgactaaaatgggaggagcaAtgcggtctgttcttactcag	12	7	3	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	2	170732399	170732399	A	G	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.784	p.M262V	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	21	0	0	21	10	32.26	-	-	-	G	170732399	A	G	170732399	3	3	255	1	0	0	0	0	1	0	0	0	17000	101	4	5	794	5	UBR3	2	170732399	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	143174147	170732399	72466974	8	23928										
SLC11A1	0	genome.wustl.edu	37	chr2	219249931	219249931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ctgccagcgactggctgcacGtctgggcgtggtgacaggca	16	12	1	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	2	219249931	219249931	G	T	SNP	SLC11A1	ENST00000233202	human	ensembl	69_37n	1	known	missense	c.335	p.R112L	1.000	pfam_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	pfam_Nat-R-assoc-macro_Nramp,prints_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	-	no_errors	SLC11A1	HGNC	ENSG00000018280	50	0	0	26	19	42.22	-	-	-	T	219249931	G	T	219249931	3	4	255	1	0	0	0	0	1	0	0	0	14469	1145	40	3	349	3	SLC11A1	2	219249931	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	48517532	219249931	23949442	9	23929										
STAC	0	genome.wustl.edu	37	chr3	36587735	36587735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ttttatcagagtcctcagtgGaaaaaagaaaggcctcatcc	8	9	3	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	3	36587735	36587735	G	T	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	missense	c.1163	p.G388V	1.000	pfam_SH3_2,superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	42	0	0	31	12	27.91	-	-	-	T	36587735	G	T	36587735	3	4	255	1	0	0	0	0	1	0	0	0	15330	1174	41	2	1205	2	STAC	3	36587735	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		36587735	161434695	10	23930										
CCDC37	0	genome.wustl.edu	37	chr3	126137601	126137601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gggagaatgactgcagctccGtgcaggccatgagagcgtga	16	9	0	4			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	3	126137601	126137601	G	A	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	missense	c.637	p.V213M	0.959	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	112	0	0	56	25	30.86	-	-	-	A	126137601	G	A	126137601	3	1	255	1	0	0	0	0	1	0	0	0	2835	1145	40	1	656	1	CCDC37	3	126137601	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	89549866	126137601	71884829	11	23931										
GAK	0	genome.wustl.edu	37	chr4	882688	882688	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tccttgaggttggtgaagagCcgctctgtcccaccccgcag	12	14	1	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	4	882688	882688	C	A	SNP	GAK	ENST00000314167	human	ensembl	69_37n	-1	known	silent	c.1152	p.R384	0.958	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_Kinase-like_dom,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_N,pfscan_Prot_kinase_cat_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	GAK	HGNC	ENSG00000178950	117	0	0	51	47	47.96	-	-	-	A	882688	C	A	882688	2	1	255	1	0	0	0	0	0	0	0	1	6245	726	26	4		4	GAK	4	882688	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		882688	190271588	12	23932										
HERC5	0	genome.wustl.edu	37	chr4	89426971	89426971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	cctccctaaatattctacaaTggaaacagttgaagaagcgc	7	10	1	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	4	89426971	89426971	T	C	SNP	HERC5	ENST00000264350	human	ensembl	69_37n	1	known	missense	c.3017	p.M1006T	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646	36	0	0	16	14	46.67	-	-	-	C	89426971	T	C	89426971	3	2	255	1	0	0	0	0	1	0	0	0	7112	1464	51	5	3107	5	HERC5	4	89426971	Missense_Mutation	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	88544283	89426971	101727305	13	23933										
MAML3	0	genome.wustl.edu	37	chr4	140811096	140811096	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tgctgctgctgctgctgctgCtgctgctgctgctgctgctg	14	13	0	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	4	140811096	140811096	C	T	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.1494	p.Q498	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	47	0	0	47	6	11.32	-	-	-	T	140811096	C	T	140811096	2	4	255	1	0	0	0	0	0	0	0	1	9278	796	28	4		4	MAML3	4	140811096	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	51384125	140811096	50343180	14	23934										
PRLR	0	genome.wustl.edu	37	chr5	35065981	35065981	+	Frame_Shift_Del	DEL	A	A	-													0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gttcctcacacttttcagacAaaagggaagggctgtcacag							TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	5	35065981	35065981	A	-	DEL	PRLR	ENST00000382002	human	ensembl	69_37n	-1	known	frame_shift_del	c.1079	p.L360fs	0.628	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PRLR	HGNC	ENSG00000113494	46	0	0	6	35	83.33	-	-	-	-	35065981	A	-	35065981	7	5	255	1	0	1	0	1	0	0	0	0	12612	131	5	0	793	0	PRLR	5	35065981	Frame_Shift_Del	DEL	A	TCGA-AC-A3EH-01A-22D-A228-09		35065981	145849279	15	23935										
RICTOR	0	genome.wustl.edu	37	chr5	38982118	38982118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tagtccacctcgaagggccaCcacctctggattctgaagtg	10	13	2	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	5	38982118	38982118	C	A	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.604	p.V202L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	51	0	0	46	11	18.97	-	-	-	A	38982118	C	A	38982118	3	1	255	1	0	0	0	0	1	0	0	0	13442	507	18	4	4646	4	RICTOR	5	38982118	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	3916137	38982118	141933142	16	23936										
SLC22A23	0	genome.wustl.edu	37	chr6	3438738	3438738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gttcagctccggcctccagcGcttggtgtctgtgtcccacg	12	15	2	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	6	3438738	3438738	G	A	SNP	SLC22A23	ENST00000467177	human	ensembl	69_37n	-1	putative	missense	c.112	p.R38C	0.000	pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_stop_codon:bad_bp_length_for_coding_region	SLC22A23	HGNC	ENSG00000137266	28	0	0	32	4	11.11	-	-	-	A	3438738	G	A	3438738	3	1	255	1	0	0	0	0	1	0	0	0	14542	1102	38	1		1	SLC22A23	6	3438738	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		3438738	167676329	17	23937										
ABCF1	0	genome.wustl.edu	37	chr6	30553921	30553921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tcctctccaggaaaaacaaaCgaaggaagccctgactcgga	9	12	1	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	6	30553921	30553921	C	T	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.1724	p.T575M	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	32	0	0	20	9	31.03	-	-	-	T	30553921	C	T	30553921	3	4	255	1	0	0	0	0	1	0	0	0	65	536	19	1	1794	1	ABCF1	6	30553921	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	27115183	30553921	140561146	18	23938										
SDK1	0	genome.wustl.edu	37	chr7	4167090	4167090	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tactgacatggacatccgtgCcggaacaggaccagaatggg	13	10	0	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	7	4167090	4167090	C	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3901	p.P1301T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	82	0	0	46	32	41.03	-	-	-	A	4167090	C	A	4167090	3	1	255	1	0	0	0	0	1	0	0	0	14056	739	26	4	4003	4	SDK1	7	4167090	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		4167090	154971573	19	23939										
ABCA13	0	genome.wustl.edu	37	chr7	48511181	48511181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tctcacccagaattccaggaTtcatgtggctgcctggtagg	11	11	2	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	7	48511181	48511181	T	C	SNP	ABCA13	ENST00000453246	human	ensembl	69_37n	1	known	missense	c.1756	p.F586L	0.877	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA13	HGNC	ENSG00000179869	51	0	0	54	13	19.4	-	-	-	C	48511181	T	C	48511181	3	2	255	1	0	0	0	0	1	0	0	0	31	1490	52	5	12967	5	ABCA13	7	48511181	Missense_Mutation	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	44344091	48511181	110627482	20	23940										
AKAP9	0	genome.wustl.edu	37	chr7	91687351	91687351	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gtatgaattaattttataacAtttatttgatagtgctaaaa	5	2	0	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	7	91687351	91687351	A	G	SNP	AKAP9	ENST00000491695	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKAP9	HGNC	ENSG00000127914	34	0	0	46	6	11.54	-	-	-	G	91687351	A	G	91687351	1	3	255	0	1	0	0	0	0	0	0	0	459	232	8	5		5	AKAP9	7	91687351	RNA	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	43176170	91687351	67451312	21	23941										
ZNF394	0	genome.wustl.edu	37	chr7	99097289	99097289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	aggttccatcgagcgctcgcTgcagagcccgcaccacggcc	12	17	0	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	7	99097289	99097289	T	C	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.428	p.Q143R	0.007	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	29	0	0	23	8	25.81	-	-	-	C	99097289	T	C	99097289	3	2	255	1	0	0	0	0	1	0	0	0	17976	1580	55	5	1269	5	ZNF394	7	99097289	Missense_Mutation	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	7409938	99097289	60041374	22	23942										
MKLN1	0	genome.wustl.edu	37	chr7	131172381	131172381	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	accaggcttttctgatgtggAtcacacctatgctcaaagaa	8	10	3	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	7	131172381	131172381	A	G	SNP	MKLN1	ENST00000352689	human	ensembl	69_37n	1	known	missense	c.2102	p.D701G	1.000	NULL	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585	48	0	0	43	5	10.42	-	-	-	G	131172381	A	G	131172381	3	3	255	1	0	0	0	0	1	0	0	0	9674	333	12	5	2205	5	MKLN1	7	131172381	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	32075092	131172381	27966282	23	23943										
MATN2	0	genome.wustl.edu	37	chr8	98900332	98900332	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tcttgctcgccttgaaaatgGaaaagatgctcgcaggctgc	11	10	1	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	8	98900332	98900332	G	T	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	nonsense	c.4	p.E2*	0.989	NULL	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	47	0	0	22	31	58.49	-	-	-	T	98900332	G	T	98900332	4	4	255	1	0	0	0	0	0	1	0	0	9405	1175	41	2	6	2	MATN2	8	98900332	Nonsense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		98900332	47463690	24	23944										
ABL1	0	genome.wustl.edu	37	chr9	133589825	133589825	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gcatgggggtccacactgcaAtgtttttgtggaacatggtg	14	7	0	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	9	133589825	133589825	A	G	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.119	p.N40S	1.000	NULL	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	122	0	0	86	40	31.75	-	-	-	G	133589825	A	G	133589825	3	3	255	1	0	0	0	0	1	0	0	0	92	101	4	5	121	5	ABL1	9	133589825	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09		133589825	7623606	25	23945										
CALCA	0	genome.wustl.edu	37	chr11	14992711	14992711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gaccaagatgctgagagccaGgaagggggagaacttttgga	16	6	0	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	11	14992711	14992711	G	A	SNP	CALCA	ENST00000331587	human	ensembl	69_37n	-1	known	silent	c.28	p.L10	0.994	pfam_Procalcitonin/adrenomedullin	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Procalcitonin_A-typ	-	no_errors	CALCA	HGNC	ENSG00000110680	57	0	0	46	8	14.81	-	-	-	A	14992711	G	A	14992711	2	1	255	1	0	0	0	0	0	0	0	1	2600	991	35	4		4	CALCA	11	14992711	Silent	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		14992711	120013805	26	23946										
SLC43A3	0	genome.wustl.edu	37	chr11	57193111	57193111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gaaggaccccagggtgaagaTgagtgagaacctctcatcct	12	10	1	4			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	11	57193111	57193111	T	C	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	missense	c.217	p.I73V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	49	0	0	30	19	38.78	-	-	-	C	57193111	T	C	57193111	3	2	255	1	0	0	0	0	1	0	0	0	14723	1464	51	5	1302	5	SLC43A3	11	57193111	Missense_Mutation	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	42200400	57193111	77813405	27	23947										
OR5A2	0	genome.wustl.edu	37	chr11	59190237	59190237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	caggaaggacaggttactgaGgaagaagtacatgggcatgt	15	5	0	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	11	59190237	59190237	G	C	SNP	OR5A2	ENST00000302040	human	ensembl	69_37n	-1	known	missense	c.190	p.L64V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A2	HGNC	ENSG00000172324	36	0	0	27	7	20.59	-	-	-	C	59190237	G	C	59190237	3	2	255	1	0	0	0	0	1	0	0	0	11213	1000	35	4	786	4	OR5A2	11	59190237	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	1997126	59190237	75816279	28	23948										
ACTN3	0	genome.wustl.edu	37	chr11	66328130	66328130	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	atcatgggcatccagggtgaGatccagaagatctgccagac	12	10	2	4			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	11	66328130	66328130	G	T	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	missense	c.1893	p.E631D	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	53	0	0	26	12	31.58	-	-	-	T	66328130	G	T	66328130	3	4	255	1	0	0	0	0	1	0	0	0	206	933	33	2	1822	2	ACTN3	11	66328130	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	7137893	66328130	68678386	29	23949										
TECTA	0	genome.wustl.edu	37	chr11	121059793	121059793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gtattctgtcttgcagacttGcccacacaattccaggattg	8	11	2	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	11	121059793	121059793	G	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.6167	p.C2056F	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	42	0	0	27	3	10	-	-	-	T	121059793	G	T	121059793	3	4	255	1	0	0	0	0	1	0	0	0	15842	1319	46	4	6249	4	TECTA	11	121059793	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	54731663	121059793	13946723	30	23950										
TSPAN9	0	genome.wustl.edu	37	chr12	3390479	3390479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ctgcgggcgcaacgccaccaCgcctttgtggagaacggtga	14	13	0	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	12	3390479	3390479	C	T	SNP	TSPAN9	ENST00000011898	human	ensembl	69_37n	1	known	missense	c.548	p.T183M	0.906	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN9	HGNC	ENSG00000011105	56	0	0	40	16	28.57	-	-	-	T	3390479	C	T	3390479	3	4	255	1	0	0	0	0	1	0	0	0	16750	536	19	1	566	1	TSPAN9	12	3390479	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		3390479	130461416	31	23951										
PWP1	0	genome.wustl.edu	37	chr12	108104257	108104257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gaggtcaaaaagaagggcttCgggtctgggatataagcaca	14	6	2	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	12	108104257	108104257	C	T	SNP	PWP1	ENST00000412830	human	ensembl	69_37n	1	known	missense	c.1366	p.R456W	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045	82	0	0	46	25	34.72	-	-	-	T	108104257	C	T	108104257	3	4	255	1	0	0	0	0	1	0	0	0	12926	875	31	1	1420	1	PWP1	12	108104257	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	104713778	108104257	25747638	32	23952										
XPO4	0	genome.wustl.edu	37	chr13	21361159	21361159	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	cagccgcagtggtcatctctGtgttgtgcttttgcaaaacc	10	11	2	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	13	21361159	21361159	G	T	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.3203	p.T1068K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	31	0	0	20	4	16.67	-	-	-	T	21361159	G	T	21361159	3	4	255	1	0	0	0	0	1	0	0	0	17543	1377	48	4	260	4	XPO4	13	21361159	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		21361159	93808719	33	23953										
BAZ1A	0	genome.wustl.edu	37	chr14	35240799	35240799	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	agataatgaaccacactgctCactgattgtggtgtacttgc	9	9	1	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	14	35240799	35240799	C	T	SNP	BAZ1A	ENST00000554865	human	ensembl	69_37n	-1	known	missense	c.67	p.E23K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BAZ1A	HGNC	ENSG00000198604	48	0	0	31	4	11.43	-	-	-	T	35240799	C	T	35240799	3	4	255	1	0	0	0	0	1	0	0	0	1333	813	29	2	1479	2	BAZ1A	14	35240799	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		35240799	72108741	34	23954										
FOXA1	0	genome.wustl.edu	37	chr14	38061463	38061463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ggccatggtgatgagcgagaTgtacgagtagggcggcttgg	19	6	0	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	14	38061463	38061463	T	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.526	p.I176V	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	96	0	0	36	17	32.08	-	-	-	C	38061463	T	C	38061463	3	2	255	1	0	0	0	0	1	0	0	0	6035	1464	51	5	896	5	FOXA1	14	38061463	Missense_Mutation	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	2820664	38061463	69288077	35	23955										
SLC5A11	0	genome.wustl.edu	37	chr16	24920357	24920357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ttctccatgatcctgtccacGgtcaccctcatcactgtctc	5	17	5	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	16	24920357	24920357	G	A	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	silent	c.1590	p.T530	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	109	0	0	50	21	29.58	-	-	-	A	24920357	G	A	24920357	2	1	255	1	0	0	0	0	0	0	0	1	14752	1103	39	1		1	SLC5A11	16	24920357	Silent	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		24920357	65434396	36	23956										
C16orf82	0	genome.wustl.edu	37	chr16	27080290	27080290	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	cattttgtgagcaccgtctcGgtggatgggaaagccgaagt	14	8	1	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	16	27080290	27080290	G	A	SNP	C16orf82	ENST00000418886	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C16orf82	HGNC	ENSG00000234186	29	0	0	20	7	25.93	-	-	-	A	27080290	G	A	27080290	1	1	255	0	1	0	0	0	0	0	0	0	1851	1131	39	1		1	C16orf82	16	27080290	RNA	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	2159933	27080290	63274463	37	23957										
BANP	0	genome.wustl.edu	37	chr16	88014554	88014554	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gtttctccttcaaccttaagGtgtcagcactgtttactatc	6	11	3	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	16	88014554	88014554	G	A	SNP	BANP	ENST00000474563	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.030	-	-	-	no_errors	BANP	HGNC	ENSG00000172530	46	0	0	42	5	10.64	-	-	-	A	88014554	G	A	88014554	1	1	255	0	1	0	0	0	0	0	0	0	1314	1276	44	4		4	BANP	16	88014554	RNA	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	60934264	88014554	2340199	38	23958										
GLP2R	0	genome.wustl.edu	37	chr17	9769199	9769199	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	agagaaatgggagcattcccTttggtcacaaggaagacatt	11	7	1	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	17	9769199	9769199	T	C	SNP	GLP2R	ENST00000458005	human	ensembl	69_37n	1	putative	silent	c.663	p.P221	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLP2R	HGNC	ENSG00000065325	65	0	0	28	4	12.5	-	-	-	C	9769199	T	C	9769199	2	2	255	1	0	0	0	0	0	0	0	1	6505	1624	56	5		5	GLP2R	17	9769199	Silent	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09		9769199	71426011	39	23959										
SLC5A10	0	genome.wustl.edu	37	chr17	18922824	18922824	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ggcaactcttcatctacatgCagtcagtgaccagctccctg	8	14	4	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	17	18922824	18922824	C	T	SNP	SLC5A10	ENST00000395647	human	ensembl	69_37n	1	known	nonsense	c.1378	p.Q460*	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025	40	0	0	32	14	30.43	-	-	-	T	18922824	C	T	18922824	4	4	255	1	0	0	0	0	0	1	0	0	14751	711	25	4	1424	4	SLC5A10	17	18922824	Nonsense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	9153625	18922824	62272386	40	23960										
BLMH	0	genome.wustl.edu	37	chr17	28598289	28598289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	aggcatgctgagggtcatacCttctctgagacagcagtgaa	12	9	2	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	17	28598289	28598289	C	T	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	silent	c.1146	p.K382	1.000	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578	41	0	0	40	5	11.11	-	-	-	T	28598289	C	T	28598289	2	4	255	1	0	0	0	0	0	0	0	1	1451	695	24	4		4	BLMH	17	28598289	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	9675465	28598289	52596921	41	23961										
COX11	0	genome.wustl.edu	37	chr17	53038654	53038654	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gccaactctctaaaacgtagActctgtgcagctttgaagcc	8	12	2	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	17	53038654	53038654	A	C	SNP	COX11	ENST00000572558	human	ensembl	69_37n	-1	known	missense	c.668	p.V223G	0.018	NULL	pfam_Cyt_c_oxidase_assmbl_CtaG,superfamily_CtaG/Cox11_dom	-	no_errors	COX11	HGNC	ENSG00000166260	11	0	0	13	12	48	-	-	-	C	53038654	A	C	53038654	3	2	255	1	0	0	0	0	1	0	0	0	3793	275	10	5	31	5	COX11	17	53038654	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	24440365	53038654	28156556	42	23962										
OR7C1	0	genome.wustl.edu	37	chr19	14910386	14910386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	taatgaaggtgtcagaacagGcgagcttcaggacttcaagt	12	7	3	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	19	14910386	14910386	G	A	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	missense	c.563	p.A188V	0.261	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	13	0	0	27	9	25	-	-	-	A	14910386	G	A	14910386	3	1	255	1	0	0	0	0	1	0	0	0	11290	1203	42	4	401	4	OR7C1	19	14910386	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		14910386	44218597	43	23963										
SLC1A6	0	genome.wustl.edu	37	chr19	15061096	15061096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gggtttccccaggctggggaGggtaagctcagcttcctgaa	15	10	1	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	19	15061096	15061096	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.1606	p.L536F	0.666	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	35	0	0	31	8	20.51	-	-	-	A	15061096	G	A	15061096	3	1	255	1	0	0	0	0	1	0	0	0	14525	1000	35	4	92	4	SLC1A6	19	15061096	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	150710	15061096	44067887	44	23964										
ZNF793	0	genome.wustl.edu	37	chr19	38028653	38028653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ggagaactcacacaggagagAagccctatgggtgcaatgaa	13	8	1	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	19	38028653	38028653	A	G	SNP	ZNF793	ENST00000445217	human	ensembl	69_37n	1	known	missense	c.1093	p.K365E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227	25	0	0	21	11	34.38	-	-	-	G	38028653	A	G	38028653	3	3	255	1	0	0	0	0	1	0	0	0	18258	247	9	5	1107	5	ZNF793	19	38028653	Missense_Mutation	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	22967557	38028653	21100330	45	23965										
NFKBIB	0	genome.wustl.edu	37	chr19	39396099	39396099	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	acccctgtcgccttgtacccCgattccgacttggagaagga	10	14	0	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	19	39396099	39396099	C	T	SNP	NFKBIB	ENST00000313582	human	ensembl	69_37n	1	known	silent	c.543	p.P181	0.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825	27	0	0	21	6	22.22	-	-	-	T	39396099	C	T	39396099	2	4	255	1	0	0	0	0	0	0	0	1	10450	639	23	1		1	NFKBIB	19	39396099	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09	1367446	39396099	19732884	46	23966										
ZSCAN5B	0	genome.wustl.edu	37	chr19	56703342	56703342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gacacgtctctcggatcatcTctgacactggcgggggcttc	12	13	3	1			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	19	56703342	56703342	T	C	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	silent	c.465	p.R155	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	55	0	0	47	6	11.32	-	-	-	C	56703342	T	C	56703342	2	2	255	1	0	0	0	0	0	0	0	1	18330	1548	54	5		5	ZSCAN5B	19	56703342	Silent	SNP	T	TCGA-AC-A3EH-01A-22D-A228-09	17307243	56703342	2425641	47	23967										
ACSS1	0	genome.wustl.edu	37	chr20	24990121	24990121	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	agactgccagaaatccgaagGgcttttgaatcctatgttag	10	8	0	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	20	24990121	24990121	G	T	SNP	ACSS1	ENST00000484396	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	ACSS1	HGNC	ENSG00000154930	15	0	0	14	4	22.22	-	-	-	T	24990121	G	T	24990121	1	4	255	0	1	0	0	0	0	0	0	0	188	1247	43	4		4	ACSS1	20	24990121	RNA	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09		24990121	38035399	48	23968										
PYGB	0	genome.wustl.edu	37	chr20	25277244	25277244	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ccccaaacactttgccagccActggtggtccctgcttttct	7	16	1	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	20	25277244	25277244	A	G	SNP	PYGB	ENST00000471359	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	PYGB	HGNC	ENSG00000100994	48	0	0	39	5	11.36	-	-	-	G	25277244	A	G	25277244	1	3	255	0	1	0	0	0	0	0	0	0	12943	174	6	5		5	PYGB	20	25277244	RNA	SNP	A	TCGA-AC-A3EH-01A-22D-A228-09	287123	25277244	37748276	49	23969										
TNRC6B	0	genome.wustl.edu	37	chr22	40677226	40677226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	gctgtctccctctggttccaCactacccaacgtcagccttg	7	17	3	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	22	40677226	40677226	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.3515	p.T1172I	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	63	0	0	36	4	10	-	-	-	T	40677226	C	T	40677226	3	4	255	1	0	0	0	0	1	0	0	0	16436	478	17	4	3678	4	TNRC6B	22	40677226	Missense_Mutation	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		40677226	10627340	50	23970										
TCEAL7	0	genome.wustl.edu	37	chrX	102586400	102586400	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	ccaaagagggaggaaaaacgCccgtatggagaatttgaacg	13	7	0	3			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	X	102586400	102586400	C	A	SNP	TCEAL7	ENST00000332431	human	ensembl	69_37n	1	known	silent	c.69	p.R23	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL7	HGNC	ENSG00000182916	17	0	0	16	5	23.81	-	-	-	A	102586400	C	A	102586400	2	1	255	1	0	0	0	0	0	0	0	1	15771	726	26	4		4	TCEAL7	23	102586400	Silent	SNP	C	TCGA-AC-A3EH-01A-22D-A228-09		102586400	52684160	51	23971										
NKAP	0	genome.wustl.edu	37	chrX	119077367	119077367	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	tgagcggtaggactggtttcGggagccttggctgaggccac	17	9	0	2			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	X	119077367	119077367	G	A	SNP	NKAP	ENST00000371410	human	ensembl	69_37n	-1	known	nonsense	c.202	p.R68*	0.002	NULL	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	48	0	0	41	14	25.45	-	-	-	A	119077367	G	A	119077367	4	1	255	1	0	0	0	0	0	1	0	0	10511	1124	39	1	1081	1	NKAP	23	119077367	Nonsense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	16490967	119077367	36193193	52	23972										
MAMLD1	0	genome.wustl.edu	37	chrX	149680750	149680750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0188679245283019	1	1	0.307734204793028	0	0.321113952827508	1	1	0	aaacacccctcagccaagtgGataatagcgttcagcagcac	8	13	2	0			TCGA-AC-A3EH-01A-22D-A228-09	TCGA-AC-A3EH-11B-21D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b01def5e-e7b8-4a89-bc6c-4cc33528fb4e	a9f3d560-75fb-436a-90d4-8e70ebeb2d6c	X	149680750	149680750	G	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	missense	c.2404	p.D802N	0.050	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	106	0	0	50	28	35.44	-	-	-	A	149680750	G	A	149680750	3	1	255	1	0	0	0	0	1	0	0	0	9279	1174	41	2	2872	2	MAMLD1	23	149680750	Missense_Mutation	SNP	G	TCGA-AC-A3EH-01A-22D-A228-09	30603383	149680750	5589810	53	23973										
HRNR	0	genome.wustl.edu	37	chr1	152188920	152188920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	tgagccagacccatgttggcCgtggctggaggagtgcccca	15	12	0	2			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	1	152188920	152188920	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5185	p.G1729S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	22	0	0	32	12	27.27	-	-	-	T	152188920	C	T	152188920	3	4	256	1	0	0	0	0	1	0	0	0	7410	652	23	1	3371	1	HRNR	1	152188920	Missense_Mutation	SNP	C	TCGA-AC-A3HN-01A-11D-A20S-09		152188920	97061701	1	23974										
PPOX	0	genome.wustl.edu	37	chr1	161137204	161137204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	agaagtgctgcctgtccgggGagaccacccagctgcccaga	13	14	0	3			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	1	161137204	161137204	G	A	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	missense	c.266	p.G89E	0.999	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	39	0	0	60	7	10.29	-	-	-	A	161137204	G	A	161137204	3	1	256	1	0	0	0	0	1	0	0	0	12425	1174	41	2	276	2	PPOX	1	161137204	Missense_Mutation	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09	8948284	161137204	88113417	2	23975										
PCDHGA10	0	genome.wustl.edu	37	chr5	140793054	140793054	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	gagctctgcgctcagagcgcGcggtgcgtggtgagttttaa	16	9	2	2			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	5	140793054	140793054	G	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	69_37n	1	known	silent	c.312	p.A104	0.001	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846	29	0	0	26	13	33.33	-	-	-	A	140793054	G	A	140793054	2	1	256	1	0	0	0	0	0	0	0	1	11624	1074	38	1		1	PCDHGA10	5	140793054	Silent	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09		140793054	40122206	3	23976										
TUBE1	0	genome.wustl.edu	37	chr6	112394011	112394011	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	tgtacatttcctctaaccatGagtgcacaggcgaggtaaag	10	9	1	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	6	112394011	112394011	G	A	SNP	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	silent	c.1044	p.L348	0.980	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	38	0	0	35	14	28.57	-	-	-	A	112394011	G	A	112394011	2	1	256	1	0	0	0	0	0	0	0	1	16860	1277	45	2		2	TUBE1	6	112394011	Silent	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09		112394011	58721056	4	23977										
C9orf72	0	genome.wustl.edu	37	chr9	27548294	27548294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	tagaaaggtcttccaaagatAaaagagtgtaggcctggttt	11	5	1	3			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	9	27548294	27548294	A	G	SNP	C9orf72	ENST00000380003	human	ensembl	69_37n	-1	known	silent	c.1386	p.F462	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894	21	0	0	15	5	25	-	-	-	G	27548294	A	G	27548294	2	3	256	1	0	0	0	0	0	0	0	1	2520	359	13	5		5	C9orf72	9	27548294	Silent	SNP	A	TCGA-AC-A3HN-01A-11D-A20S-09		27548294	113665137	5	23978										
PCDH15	0	genome.wustl.edu	37	chr10	55973752	55973752	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	gtttactggctccaggagacTaagttctgctgtcctaggat	11	9	1	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	10	55973752	55973752	T	C	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.1042	p.S348G	0.999	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	34	0	0	24	3	11.11	-	-	-	C	55973752	T	C	55973752	3	2	256	1	0	0	0	0	1	0	0	0	11584	1522	53	5	6565	5	PCDH15	10	55973752	Missense_Mutation	SNP	T	TCGA-AC-A3HN-01A-11D-A20S-09		55973752	79560995	6	23979										
CPN1	0	genome.wustl.edu	37	chr10	101835810	101835810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	acagctgcagcatcagctcgCggcccaacgcttcgttgccg	11	16	1	0			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	10	101835810	101835810	C	T	SNP	CPN1	ENST00000370418	human	ensembl	69_37n	-1	known	missense	c.278	p.R93H	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054	26	0	0	25	11	30.56	-	-	-	T	101835810	C	T	101835810	3	4	256	1	0	0	0	0	1	0	0	0	3839	768	27	1	1130	1	CPN1	10	101835810	Missense_Mutation	SNP	C	TCGA-AC-A3HN-01A-11D-A20S-09	45862058	101835810	33698937	7	23980										
BTG4	0	genome.wustl.edu	37	chr11	111368756	111368756	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	caaagggatctacccatatgGtcatctccttcggaagtccc	8	13	3	0			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	11	111368756	111368756	G	C	SNP	BTG4	ENST00000356018	human	ensembl	69_37n	-1	known	missense	c.278	p.T93S	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG4	HGNC	ENSG00000137707	80	0	0	40	14	25.93	-	-	-	C	111368756	G	C	111368756	3	2	256	1	0	0	0	0	1	0	0	0	1565	1261	44	4	409	4	BTG4	11	111368756	Missense_Mutation	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09		111368756	23637760	8	23981										
FZD10	0	genome.wustl.edu	37	chr12	130648819	130648819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	gagaagctcatggtgcgtatCgggctcttctctgtgctgta	13	9	3	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	12	130648819	130648819	C	T	SNP	FZD10	ENST00000539839	human	ensembl	69_37n	1	known	missense	c.1234	p.R412W	0.999	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432	37	0	0	22	6	21.43	-	-	-	T	130648819	C	T	130648819	3	4	256	1	0	0	0	0	1	0	0	0	6178	874	31	1	1334	1	FZD10	12	130648819	Missense_Mutation	SNP	C	TCGA-AC-A3HN-01A-11D-A20S-09		130648819	3203076	9	23982										
POLE	0	genome.wustl.edu	37	chr12	133252323	133252323	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	gagaagacacagactcaccaGtcaaaaaagtccccgttgta	8	11	2	3			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	12	133252323	133252323	G	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.1137	p.D379	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	26	0	0	15	6	28.57	-	-	-	A	133252323	G	A	133252323	2	1	256	1	0	0	0	0	0	0	0	1	12270	1020	36	4		4	POLE	12	133252323	Silent	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09	2603504	133252323	599572	10	23983										
SIN3A	0	genome.wustl.edu	37	chr15	75673022	75673022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	ttcacgaagctcaggcgaggTagtatctgaattcatgtatc	10	8	4	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	15	75673022	75673022	T	C	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.3331	p.T1111A	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	39	0	0	25	6	19.35	-	-	-	C	75673022	T	C	75673022	3	2	256	1	0	0	0	0	1	0	0	0	14414	1638	57	5	502	5	SIN3A	15	75673022	Missense_Mutation	SNP	T	TCGA-AC-A3HN-01A-11D-A20S-09		75673022	26858370	11	23984										
FAM134C	0	genome.wustl.edu	37	chr17	40761332	40761332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	gggtcgtgggaaccccttcgGcctcagccatctccccgcgg	13	17	2	0			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	17	40761332	40761332	G	A	SNP	FAM134C	ENST00000309428	human	ensembl	69_37n	-1	known	missense	c.11	p.A4V	0.515	NULL	NULL	-	no_errors	FAM134C	HGNC	ENSG00000141699	38	0	0	31	8	20	-	-	-	A	40761332	G	A	40761332	3	1	256	1	0	0	0	0	1	0	0	0	5487	1203	42	4	1425	4	FAM134C	17	40761332	Missense_Mutation	SNP	G	TCGA-AC-A3HN-01A-11D-A20S-09		40761332	40433878	12	23985										
ZNF846	0	genome.wustl.edu	37	chr19	9868562	9868562	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	ttaaaggctttcccacattcTttacattcatagggcttttc	5	10	2	0			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	19	9868562	9868562	T	A	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	19	0	0	38	8	17.39	-	-	-	A	9868562	T	A	9868562	3	1	256	1	0	0	0	0	1	0	0	0	18285	1606	56	5	414	5	ZNF846	19	9868562	Missense_Mutation	SNP	T	TCGA-AC-A3HN-01A-11D-A20S-09		9868562	49260421	13	23986										
CYTH4	0	genome.wustl.edu	37	chr22	37698059	37698059	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	caaagttactcaatccatacAtcaaccgtttgaggtcagta	6	10	3	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	22	37698059	37698059	A	G	SNP	CYTH4	ENST00000439667	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CYTH4	HGNC	ENSG00000100055	38	0	0	33	12	26.67	-	-	-	G	37698059	A	G	37698059	1	3	256	0	1	0	0	0	0	0	0	0	4237	232	8	5		5	CYTH4	22	37698059	RNA	SNP	A	TCGA-AC-A3HN-01A-11D-A20S-09		37698059	13606507	14	23987										
ERCC6L	0	genome.wustl.edu	37	chrX	71428269	71428269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	tcatcagccaatataccaccTtttcttccatccctatacag	2	15	3	0			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	71428269	71428269	T	G	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.348	p.K116N	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	37	0	0	34	4	10.53	-	-	-	G	71428269	T	G	71428269	3	3	256	1	0	0	0	0	1	0	0	0	5255	1606	56	5	3408	5	ERCC6L	23	71428269	Missense_Mutation	SNP	T	TCGA-AC-A3HN-01A-11D-A20S-09		71428269	83842291	15	23988										
ATRX	0	genome.wustl.edu	37	chrX	76890049	76890049	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	aatatatattaatgaatccaCaaaaacaggataccttcata	3	7	1	1			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	76890049	76890049	C	G	SNP	ATRX	ENST00000460639	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	34	0	0	30	5	14.29	-	-	-	G	76890049	C	G	76890049	1	3	256	0	1	0	0	0	0	0	0	0	1212	493	17	4		4	ATRX	23	76890049	RNA	SNP	C	TCGA-AC-A3HN-01A-11D-A20S-09	5461780	76890049	78380511	16	23989										
KIAA1210	0	genome.wustl.edu	37	chrX	118215342	118215342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.688235294117647	0	0.860294117647059	1	1	0	tgctttggctttcttcctggCcagtgagaaccagacaggct	11	11	1	2			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	118215342	118215342	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.5080	p.A1694S	1.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	47	0	0	50	9	15.25	-	-	-	A	118215342	C	A	118215342	3	1	256	1	0	0	0	0	1	0	0	0	8266	739	26	4	53	4	KIAA1210	23	118215342	Missense_Mutation	SNP	C	TCGA-AC-A3HN-01A-11D-A20S-09	41325293	118215342	37055218	17	23990										
RHOC	0	genome.wustl.edu	37	chr1	113246297	113246297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ccacctcaatgtccgcaataTagttctcaaagacagtaggg	8	11	2	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	1	113246297	113246297	T	C	SNP	RHOC	ENST00000285735	human	ensembl	69_37n	-1	known	missense	c.125	p.Y42C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOC	HGNC	ENSG00000155366	52	0	0	39	13	25	-	-	-	C	113246297	T	C	113246297	3	2	257	1	0	0	0	0	1	0	0	0	13420	1406	49	5	472	5	RHOC	1	113246297	Missense_Mutation	SNP	T	TCGA-AC-A3OD-01A-11D-A21Q-09		113246297	136004324	1	23991										
KCNF1	0	genome.wustl.edu	37	chr2	11053040	11053040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	agccgagggccgctggcgccGctgccagaagtgcgtctgga	17	13	1	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	2	11053040	11053040	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	missense	c.488	p.R163H	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	165	0	0	105	36	25.35	-	-	-	A	11053040	G	A	11053040	3	1	257	1	0	0	0	0	1	0	0	0	8080	1087	38	1	490	1	KCNF1	2	11053040	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09		11053040	232146333	2	23992										
ZSWIM2	0	genome.wustl.edu	37	chr2	187703893	187703893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ctccaagacccagttgtaaaGcagctagtgagaaatcccaa	8	11	0	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	2	187703893	187703893	G	T	SNP	ZSWIM2	ENST00000295131	human	ensembl	69_37n	-1	known	missense	c.287	p.A96D	1.000	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	54	0	0	48	13	21.31	-	-	-	T	187703893	G	T	187703893	3	4	257	1	0	0	0	0	1	0	0	0	18332	971	34	4	1638	4	ZSWIM2	2	187703893	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09	176650853	187703893	55495480	3	23993										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	55	32	36.78	-	-	-	A	178936091	G	A	178936091	3	1	257	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09		178936091	19086339	4	23994										
TIAM2	0	genome.wustl.edu	37	chr6	155450781	155450781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	gacaccttctcaactgctacGggaggaatgagagcattgcc	11	11	1	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	6	155450781	155450781	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.424	p.G142R	0.832	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	46	0	0	38	11	22.45	-	-	-	A	155450781	G	A	155450781	3	1	257	1	0	0	0	0	1	0	0	0	15986	1116	39	1	426	1	TIAM2	6	155450781	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09		155450781	15664286	5	23995										
POLR3D	0	genome.wustl.edu	37	chr8	22106709	22106709	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	aagaggaactgctgtttctgCagctgccagacaccctccct	9	14	1	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	8	22106709	22106709	C	G	SNP	POLR3D	ENST00000397802	human	ensembl	69_37n	1	known	missense	c.808	p.Q270E	1.000	pfam_RNA_pol_III_Rpc4	pfam_RNA_pol_III_Rpc4	-	no_errors	POLR3D	HGNC	ENSG00000168495	56	0	0	50	10	16.67	-	-	-	G	22106709	C	G	22106709	3	3	257	1	0	0	0	0	1	0	0	0	12305	711	25	4	830	4	POLR3D	8	22106709	Missense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09		22106709	124257313	6	23996										
OPN4	0	genome.wustl.edu	37	chr10	88423491	88423491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ggcggtccctctacggtcagGgtctggaggacttggaagcc	16	11	3	0			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	10	88423491	88423491	G	A	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	1	known	missense	c.1363	p.G455S	0.005	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	63	0	0	61	15	19.74	-	-	-	A	88423491	G	A	88423491	3	1	257	1	0	0	0	0	1	0	0	0	10955	1232	43	4	1401	4	OPN4	10	88423491	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09		88423491	47111256	7	23997										
CHUK	0	genome.wustl.edu	37	chr10	101950666	101950667	+	Frame_Shift_Del	DEL	AT	AT	-													0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	cctcatttgcctcatgaataAtagtgcttaaatggccaagg							TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	10	101950666	101950667	AT	-	DEL	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	frame_shift_del	c.2168_2167	p.I723fs	1.000:1.000	pfam_IKKbetaNEMObind	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	87	0	0	60	13	17.81	-	-	-	-	101950667	AT	-	101950666	7	5	257	1	0	1	0	1	0	0	0	0	3445	101	4	0	77	0	CHUK	10	101950666	Frame_Shift_Del	DEL	AT	TCGA-AC-A3OD-01A-11D-A21Q-09	13527175	101950666	33584081	8	23998										
MRVI1	0	genome.wustl.edu	37	chr11	10624667	10624667	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	cgggggctggagagactcacCtggcggacggcgcctaccac	16	14	1	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	11	10624667	10624667	C	A	SNP	MRVI1	ENST00000421747	human	ensembl	69_37n	-1	known	missense	c.1848	p.Q616H	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952	128	0	0	82	15	15.46	-	-	-	A	10624667	C	A	10624667	3	1	257	1	0	0	0	0	1	0	0	0	9925	695	24	4	895	4	MRVI1	11	10624667	Missense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09		10624667	124381849	9	23999										
TBX10	0	genome.wustl.edu	37	chr11	67399312	67399312	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ctcaggtgggggcagcagctGatgatggagccaagcagggg	19	8	1	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	11	67399312	67399312	G	A	SNP	TBX10	ENST00000335385	human	ensembl	69_37n	-1	known	nonsense	c.922	p.Q308*	0.815	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800	219	0	0	170	62	26.72	-	-	-	A	67399312	G	A	67399312	4	1	257	1	0	0	0	0	0	1	0	0	15746	1299	45	2	239	2	TBX10	11	67399312	Nonsense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09	56774645	67399312	67607204	10	24000			1	49		2	2	32	G		2.102911e-05
TBX10	0	genome.wustl.edu	37	chr11	67399343	67399343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	caagcaggggtcttggaggtGgaagctgaagctttgttggg	18	5	1	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	11	67399343	67399343	G	A	SNP	TBX10	ENST00000335385	human	ensembl	69_37n	-1	known	silent	c.891	p.S297	0.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800	149	0	0	151	49	24.5	-	-	-	A	67399343	G	A	67399343	2	1	257	1	0	0	0	0	0	0	0	1	15746	1335	47	4		4	TBX10	11	67399343	Silent	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09	31	67399343	67607173	11	24001			1	49		2	2	32	G		2.102911e-05
SRPR	0	genome.wustl.edu	37	chr11	126134965	126134965	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	tggagggtgtagggcactcaAacgccgggtgtgtgtacgca	17	8	1	0			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	11	126134965	126134965	A	G	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	silent	c.1414	p.L472	0.922	pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	114	0	0	57	18	24	-	-	-	G	126134965	A	G	126134965	2	3	257	1	0	0	0	0	0	0	0	1	15253	11	1	5		5	SRPR	11	126134965	Silent	SNP	A	TCGA-AC-A3OD-01A-11D-A21Q-09	58735622	126134965	8871551	12	24002										
RNF40	0	genome.wustl.edu	37	chr16	30774485	30774485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	gttcaagaacaagaaactggCagagcggctggaacaacggc	13	9	1	3			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	16	30774485	30774485	C	G	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.179	p.A60G	0.999	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	74	0	0	57	10	14.93	-	-	-	G	30774485	C	G	30774485	3	3	257	1	0	0	0	0	1	0	0	0	13579	710	25	4	185	4	RNF40	16	30774485	Missense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09		30774485	59580268	13	24003										
CDH1	0	genome.wustl.edu	37	chr16	68856113	68856113	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	cgagtgccaactggaccattCagtacaacgacccaagtggg	11	12	1	0			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	16	68856113	68856113	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1921	p.Q641*	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	62	0	0	42	17	28.81	-	-	-	T	68856113	C	T	68856113	4	4	257	1	0	0	0	0	0	1	0	0	3124	827	29	2	1967	2	CDH1	16	68856113	Nonsense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09	38081628	68856113	21498640	14	24004										
TP53	0	genome.wustl.edu	37	chr17	7578500	7578500	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	tgtggaatcaacccacagctGcacagggcaggtcttggcca	12	12	2	0			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	17	7578500	7578500	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.430	p.Q144*	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	112	0	0	50	16	24.24	-	-	-	A	7578500	G	A	7578500	4	1	257	1	0	0	0	0	0	1	0	0	16477	1328	46	4	868	4	TP53	17	7578500	Nonsense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09		7578500	73616710	15	24005										
PAPL	0	genome.wustl.edu	37	chr19	39591969	39591969	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ctcatgagcactcgtatgaaCgactgtggccaatttacaac	8	11	1	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	19	39591969	39591969	C	T	SNP	PAPL	ENST00000331256	human	ensembl	69_37n	1	known	nonsense	c.1015	p.R339*	0.957	NULL	pfam_Metallo_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	AC011443.1	Clone_based_ensembl_gene	ENSG00000183760	71	0	0	49	7	12.5	-	-	-	T	39591969	C	T	39591969	4	4	257	1	0	0	0	0	0	1	0	0	11500	528	19	1	1049	1	PAPL	19	39591969	Nonsense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09		39591969	19537014	16	24006										
SLC8A2	0	genome.wustl.edu	37	chr19	47969528	47969528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	cggctggcagcggtaggaccCctggcagccccctgtgctgg	16	15	0	0			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	19	47969528	47969528	C	T	SNP	SLC8A2	ENST00000236877	human	ensembl	69_37n	-1	known	missense	c.133	p.G45R	0.225	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	30	0	0	19	8	29.63	-	-	-	T	47969528	C	T	47969528	3	4	257	1	0	0	0	0	1	0	0	0	14796	623	22	4	2668	4	SLC8A2	19	47969528	Missense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09	8377559	47969528	11159455	17	24007										
TPTE	0	genome.wustl.edu	37	chr21	11011510	11011510	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	aggggtctgaaggacggccaCgctattctgatttataatct	11	8	3	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	21	11011510	11011510	C	T	SNP	TPTE	ENST00000415664	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157	8	0	0	6	4	40	-	-	-	T	11011510	C	T	11011510	1	4	257	0	1	0	0	0	0	0	0	0	16526	551	19	1		1	TPTE	21	11011510	RNA	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09		11011510	37118385	18	24008										
MAGEB16	0	genome.wustl.edu	37	chrX	35821240	35821240	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	cattctttcccatctcagtaTgcggaagctctgaaagagga	9	10	3	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	X	35821240	35821240	T	G	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	nonsense	c.1023	p.Y341*	0.089	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	55	0	0	69	11	13.75	-	-	-	G	35821240	T	G	35821240	4	3	257	1	0	0	0	0	0	1	0	0	9245	1471	51	5	929	5	MAGEB16	23	35821240	Nonsense_Mutation	SNP	T	TCGA-AC-A3OD-01A-11D-A21Q-09		35821240	119449320	19	24009										
TIMP1	0	genome.wustl.edu	37	chrX	47442869	47442869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	tgttgttgctgtggctgataGcccccagcagggcctgcacc	13	13	0	1			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	X	47442869	47442869	G	A	SNP	TIMP1	ENST00000218388	human	ensembl	69_37n	1	known	missense	c.55	p.A19T	0.472	NULL	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP1	HGNC	ENSG00000102265	122	0	0	114	30	20.83	-	-	-	A	47442869	G	A	47442869	3	1	257	1	0	0	0	0	1	0	0	0	16012	971	34	4	57	4	TIMP1	23	47442869	Missense_Mutation	SNP	G	TCGA-AC-A3OD-01A-11D-A21Q-09	11621629	47442869	107827691	20	24010										
FATE1	0	genome.wustl.edu	37	chrX	150890386	150890386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.569727348185035	1.70545454545455	0	1.96783216783217	0.1	0.5224358974359	0	ctctcccagcaacccagggaCagatgcagtggcgcagacta	11	14	1	2			TCGA-AC-A3OD-01A-11D-A21Q-09	TCGA-AC-A3OD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f492394-2cdc-408a-aa82-9a4aff52105e	ddbd44d8-7387-45dd-8656-923bf3944aae	X	150890386	150890386	C	T	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	missense	c.353	p.T118I	0.000	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	76	0	0	41	9	18	-	-	-	T	150890386	C	T	150890386	3	4	257	1	0	0	0	0	1	0	0	0	5739	478	17	4	367	4	FATE1	23	150890386	Missense_Mutation	SNP	C	TCGA-AC-A3OD-01A-11D-A21Q-09	103447517	150890386	4380174	21	24011										
KIAA0319L	0	genome.wustl.edu	37	chr1	35921805	35921806	+	Frame_Shift_Ins	INS	-	-	A													0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	actgtcaggtttgcagtagtINSagagttggtagctccatcag							TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	35921805	35921806	-	A	INS	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1465_1464	p.T488fs	0.988:0.022	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	43	0	0	60	14	18.92	-	-	-	A	35921806	-	A	35921805	7	5	258	1	0	1	1	0	0	0	0	0	8221	1638	57	0	1732	0	KIAA0319L	1	35921805	Frame_Shift_Ins	INS	-	TCGA-AC-A3QP-01A-11D-A22X-09		35921805	213328816	1	24012										
THEM5	0	genome.wustl.edu	37	chr1	151819755	151819755	+	Frame_Shift_Del	DEL	C	C	-													0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	caggggaggcaggaggcaggCaggggaggcaggaggcagga							TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	151819755	151819755	C	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.624	p.P209fs	0.108	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	20	0	0	31	6	15.38	-	-	-	-	151819755	C	-	151819755	7	5	258	1	0	1	0	1	0	0	0	0	15954	725	25	0		0	THEM5	1	151819755	Frame_Shift_Del	DEL	C	TCGA-AC-A3QP-01A-11D-A22X-09	115897950	151819755	97430866	2	24013										
QSOX1	0	genome.wustl.edu	37	chr1	180165578	180165578	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ttccctgcagctgggtcagcTgcccggagggatgtgcagaa	15	11	1	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	180165578	180165578	T	C	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	silent	c.1650	p.A550	0.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	50	0	0	75	14	15.73	-	-	-	C	180165578	T	C	180165578	2	2	258	1	0	0	0	0	0	0	0	1	12966	1567	55	5		5	QSOX1	1	180165578	Silent	SNP	T	TCGA-AC-A3QP-01A-11D-A22X-09	28345823	180165578	69085043	3	24014										
MYBPH	0	genome.wustl.edu	37	chr1	203140616	203140616	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ggccgagcgaatgaagaggaTggagtcctggtccccggtgc	17	10	0	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	203140616	203140616	T	C	SNP	MYBPH	ENST00000255416	human	ensembl	69_37n	-1	known	missense	c.688	p.I230V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPH	HGNC	ENSG00000133055	60	0	0	87	16	15.53	-	-	-	C	203140616	T	C	203140616	3	2	258	1	0	0	0	0	1	0	0	0	10086	1464	51	5	769	5	MYBPH	1	203140616	Missense_Mutation	SNP	T	TCGA-AC-A3QP-01A-11D-A22X-09	22975038	203140616	46110005	4	24015										
ACOXL	0	genome.wustl.edu	37	chr2	111562844	111562844	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	cctctcttttccacaggtttGgttccgtggctccagatgga	10	12	1	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	2	111562844	111562844	G	C	SNP	ACOXL	ENST00000439055	human	ensembl	69_37n	1	known	missense	c.625	p.G209R	1.000	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	33	0	0	33	8	19.51	-	-	-	C	111562844	G	C	111562844	3	2	258	1	0	0	0	0	1	0	0	0	161	1348	47	4	655	4	ACOXL	2	111562844	Missense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09		111562844	131636529	5	24016										
COLQ	0	genome.wustl.edu	37	chr3	15520859	15520859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ccataccttttctccctttgGtcctgtcttgccaggaagcc	7	15	2	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	3	15520859	15520859	G	A	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	missense	c.352	p.P118S	1.000	pfam_Collagen	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	39	0	0	27	15	35.71	-	-	-	A	15520859	G	A	15520859	3	1	258	1	0	0	0	0	1	0	0	0	3743	1261	44	4	1071	4	COLQ	3	15520859	Missense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09		15520859	182501571	6	24017										
PHC3	0	genome.wustl.edu	37	chr3	169846622	169846622	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	gcattctgcaccaaaacctgGccctgggacagaatttcagg	10	12	2	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	3	169846622	169846622	G	T	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	silent	c.1638	p.G546	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	29	0	0	21	8	27.59	-	-	-	T	169846622	G	T	169846622	2	4	258	1	0	0	0	0	0	0	0	1	11892	1190	42	4		4	PHC3	3	169846622	Silent	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	154325763	169846622	28175808	7	24018										
DMXL1	0	genome.wustl.edu	37	chr5	118513861	118513861	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ttgtggcccatcctctaaatGagaaaatgtggtctgctgtg	11	8	2	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	5	118513861	118513861	G	T	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	nonsense	c.7057	p.E2353*	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	41	0	0	51	7	12.07	-	-	-	T	118513861	G	T	118513861	4	4	258	1	0	0	0	0	0	1	0	0	4630	1291	45	2	7167	2	DMXL1	5	118513861	Nonsense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09		118513861	62401399	8	24019										
ZNF655	0	genome.wustl.edu	37	chr7	99170231	99170231	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	taagtatgacatgagcttcaAccagaattcagcctctggta	8	9	3	3			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	7	99170231	99170231	A	G	SNP	ZNF655	ENST00000424881	human	ensembl	69_37n	1	known	missense	c.605	p.N202S	0.344	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343	34	0	0	34	4	10.53	-	-	-	G	99170231	A	G	99170231	3	3	258	1	0	0	0	0	1	0	0	0	18164	43	2	5	1037	5	ZNF655	7	99170231	Missense_Mutation	SNP	A	TCGA-AC-A3QP-01A-11D-A22X-09		99170231	59968432	9	24020										
CTTNBP2	0	genome.wustl.edu	37	chr7	117375424	117375426	+	In_Frame_Del	DEL	ATG	ATG	-													0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	atttttctaaattttctaaaAtgatgatgattttcttctta							TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	7	117375424	117375426	ATG	-	DEL	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	in_frame_del	c.3587_3585	p.I1196in_frame_del	1.000:1.000:0.997	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	30	0	0	36	5	12.2	-	-	-	-	117375426	ATG	-	117375424	7	5	258	1	0	1	0	1	0	0	0	0	4077	101	4	0	1440	0	CTTNBP2	7	117375424	In_Frame_Del	DEL	ATG	TCGA-AC-A3QP-01A-11D-A22X-09	18205193	117375424	41763239	10	24021										
RAB2A	0	genome.wustl.edu	37	chr8	61533234	61533234	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ctgttctcttttatttcaggCaaatggcattaaaattggcc	7	8	2	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	8	61533234	61533234	C	T	SNP	RAB2A	ENST00000529579	human	ensembl	69_37n	1	novel	nonsense	c.433	p.Q145*	1.000	smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2A	HGNC	ENSG00000104388	35	0	0	59	20	25.32	-	-	-	T	61533234	C	T	61533234	4	4	258	1	0	0	0	0	0	1	0	0	13000	724	25	4	575	4	RAB2A	8	61533234	Nonsense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09		61533234	84830788	11	24022										
NOL6	0	genome.wustl.edu	37	chr9	33470121	33470121	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ggcaggaagcggaaacagccCttcacggcatagggcacttg	14	11	1	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	9	33470121	33470121	C	T	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	silent	c.447	p.K149	0.999	NULL	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	26	0	0	37	16	30.19	-	-	-	T	33470121	C	T	33470121	2	4	258	1	0	0	0	0	0	0	0	1	10597	680	24	4		4	NOL6	9	33470121	Silent	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09		33470121	107743310	12	24023										
SVEP1	0	genome.wustl.edu	37	chr9	113189940	113189940	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ccgtaatgacagcatctttgAtggcaggtggttctccacag	11	10	2	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	9	113189940	113189940	A	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.5906	p.I1969N	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	55	0	0	49	19	27.94	-	-	-	T	113189940	A	T	113189940	3	4	258	1	0	0	0	0	1	0	0	0	15511	333	12	5	4861	5	SVEP1	9	113189940	Missense_Mutation	SNP	A	TCGA-AC-A3QP-01A-11D-A22X-09	79719819	113189940	28023491	13	24024										
MAP3K8	0	genome.wustl.edu	37	chr10	30736871	30736871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	gacgaagaaaagaatggcgtGtaaactggtatgtgttttct	12	4	1	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	30736871	30736871	G	T	SNP	MAP3K8	ENST00000263056	human	ensembl	69_37n	1	known	missense	c.497	p.C166F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	21	0	0	30	8	21.05	-	-	-	T	30736871	G	T	30736871	3	4	258	1	0	0	0	0	1	0	0	0	9327	1377	48	4	503	4	MAP3K8	10	30736871	Missense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09		30736871	104797876	14	24025										
NRBF2	0	genome.wustl.edu	37	chr10	64913409	64913409	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	aggatgcagctgcccatcttCagacatctcacaaaccctct	6	15	4	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	64913409	64913409	C	G	SNP	NRBF2	ENST00000277746	human	ensembl	69_37n	1	known	missense	c.295	p.Q99E	0.991	pfam_DUF1875	pfam_DUF1875	-	no_errors	NRBF2	HGNC	ENSG00000148572	28	0	0	41	11	21.15	-	-	-	G	64913409	C	G	64913409	3	3	258	1	0	0	0	0	1	0	0	0	10714	827	29	2	309	2	NRBF2	10	64913409	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09	34176538	64913409	70621338	15	24026										
PDCD4	0	genome.wustl.edu	37	chr10	112650361	112650361	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	tctgagtatgtctaaaggtgGaaagcgtaaagatagtgtgt	13	3	2	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	112650361	112650361	G	C	SNP	PDCD4	ENST00000280154	human	ensembl	69_37n	1	known	missense	c.923	p.G308A	1.000	superfamily_ARM-type_fold	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593	86	0	0	86	17	16.35	-	-	-	C	112650361	G	C	112650361	3	2	258	1	0	0	0	0	1	0	0	0	11694	1174	41	2	963	2	PDCD4	10	112650361	Missense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	47736952	112650361	22884386	16	24027										
GPR123	0	genome.wustl.edu	37	chr10	134942831	134942831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ctacagctgccccacgcagcCgggcagggaggcagcgctcg	15	16	0	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	134942831	134942831	C	T	SNP	GPR123	ENST00000392606	human	ensembl	69_37n	1	putative	missense	c.1211	p.P404L	0.348	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177	10	0	0	27	12	30.77	-	-	-	T	134942831	C	T	134942831	3	4	258	1	0	0	0	0	1	0	0	0	6687	652	23	1	1521	1	GPR123	10	134942831	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09	22292470	134942831	591916	17	24028										
PRDM11	0	genome.wustl.edu	37	chr11	45230588	45230588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	agatttgggaaggcatagccCggaaaatcacctccgtcagc	11	11	2	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	45230588	45230588	C	T	SNP	PRDM11	ENST00000534751	human	ensembl	69_37n	1	putative	missense	c.608	p.P203L	1.000	smart_SANT/Myb	smart_SANT/Myb	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRDM11	HGNC	ENSG00000019485	12	0	0	11	9	45	-	-	-	T	45230588	C	T	45230588	3	4	258	1	0	0	0	0	1	0	0	0	12533	667	23	1		1	PRDM11	11	45230588	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09		45230588	89775928	18	24029										
OR5M3	0	genome.wustl.edu	37	chr11	56237368	56237368	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	agggaatatgtgaagttaatGccggcaagtatgatcattgt	12	4	1	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	56237368	56237368	G	T	SNP	OR5M3	ENST00000312240	human	ensembl	69_37n	-1	known	silent	c.606	p.G202	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M3	HGNC	ENSG00000174937	62	0	0	56	16	22.22	-	-	-	T	56237368	G	T	56237368	2	4	258	1	0	0	0	0	0	0	0	1	11248	1306	46	4		4	OR5M3	11	56237368	Silent	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	11006780	56237368	78769148	19	24030										
PACS1	0	genome.wustl.edu	37	chr11	65978677	65978677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ggagaaaacgttacaagaatCggaccatcttgggctataag	11	7	1	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	65978677	65978677	C	T	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	missense	c.607	p.R203W	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	57	0	0	59	16	21.33	-	-	-	T	65978677	C	T	65978677	3	4	258	1	0	0	0	0	1	0	0	0	11445	875	31	1	621	1	PACS1	11	65978677	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09	9741309	65978677	69027839	20	24031										
TAS2R42	0	genome.wustl.edu	37	chr12	11338712	11338712	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	gagaataaatgagtggcacgAgggaaaggcatttaaggcta	14	4	0	2			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	11338712	11338712	A	G	SNP	TAS2R42	ENST00000334266	human	ensembl	69_37n	-1	known	missense	c.832	p.S278P	0.025	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R42	HGNC	ENSG00000186136	24	0	0	18	7	28	-	-	-	G	11338712	A	G	11338712	3	3	258	1	0	0	0	0	1	0	0	0	15672	304	11	5	116	5	TAS2R42	12	11338712	Missense_Mutation	SNP	A	TCGA-AC-A3QP-01A-11D-A22X-09		11338712	122513183	21	24032										
PIK3C2G	0	genome.wustl.edu	37	chr12	18435178	18435178	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	gtggcaaaattccacactacGagagtgaaattgatgaaaac	9	7	0	4			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	18435178	18435178	G	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	nonsense	c.163	p.E55*	0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	27	0	0	28	13	31.71	-	-	-	T	18435178	G	T	18435178	4	4	258	1	0	0	0	0	0	1	0	0	11985	1059	37	3	165	3	PIK3C2G	12	18435178	Nonsense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	7096466	18435178	115416717	22	24033										
KIAA0528	0	genome.wustl.edu	37	chr12	22678546	22678546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	tagaatgtatttacttactgCaaaagaatttgactccacat	5	7	0	3			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	22678546	22678546	C	A	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.443	p.C148F	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	18	0	0	20	9	31.03	-	-	-	A	22678546	C	A	22678546	3	1	258	1	0	0	0	0	1	0	0	0	8234	710	25	4	2643	4	KIAA0528	12	22678546	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09	4243368	22678546	111173349	23	24034										
LRRK2	0	genome.wustl.edu	37	chr12	40643748	40643748	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	cagctgtttggccctcctcaGtaagtaacttcactaaaaag	7	11	2	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	40643748	40643748	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	splice_site	c.958+1	e8+1	1.000	-	-	-	no_errors	LRRK2	HGNC	ENSG00000188906	29	0	0	28	10	26.32	-	-	-	A	40643748	G	A	40643748	5	1	258	1	0	0	0	0	0	0	1	0	9099	1043	36	4	989	4	LRRK2	12	40643748	Splice_Site	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	17965202	40643748	93208147	24	24035										
TPPP3	0	genome.wustl.edu	37	chr16	67424196	67424196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	cttgccgctctcatcgaagcGctccttgtgggagcccgtgt	12	14	1	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	16	67424196	67424196	G	A	SNP	TPPP3	ENST00000290942	human	ensembl	69_37n	-1	known	missense	c.412	p.R138C	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713	49	0	0	32	19	37.25	-	-	-	A	67424196	G	A	67424196	3	1	258	1	0	0	0	0	1	0	0	0	16511	1087	38	1	122	1	TPPP3	16	67424196	Missense_Mutation	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09		67424196	22930557	25	24036										
ACTG1	0	genome.wustl.edu	37	chr17	79478936	79478936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ggccgagcctcacctgagtcAtcttctctctgttggccttg	10	14	5	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	17	79478936	79478936	A	G	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.356	p.M119T	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	31	0	0	36	11	23.4	-	-	-	G	79478936	A	G	79478936	3	3	258	1	0	0	0	0	1	0	0	0	196	217	8	5	787	5	ACTG1	17	79478936	Missense_Mutation	SNP	A	TCGA-AC-A3QP-01A-11D-A22X-09		79478936	1716274	26	24037										
HMHA1	0	genome.wustl.edu	37	chr19	1080476	1080476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	tctccagccgggcgaggacaCcaggttcacaagtcatggcc	12	14	3	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	1080476	1080476	C	A	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	missense	c.1842	p.H614Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	59	0	0	64	12	15.79	-	-	-	A	1080476	C	A	1080476	3	1	258	1	0	0	0	0	1	0	0	0	7291	506	18	4	1900	4	HMHA1	19	1080476	Missense_Mutation	SNP	C	TCGA-AC-A3QP-01A-11D-A22X-09		1080476	58048507	27	24038										
C19orf44	0	genome.wustl.edu	37	chr19	16620384	16620384	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	tccactgggcaggatgccccGaggcaggcccaggcgaggag	17	13	0	0			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	16620384	16620384	G	A	SNP	C19orf44	ENST00000221671	human	ensembl	69_37n	1	known	silent	c.1224	p.P408	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072	40	0	0	38	11	22.45	-	-	-	A	16620384	G	A	16620384	2	1	258	1	0	0	0	0	0	0	0	1	1945	1045	37	1		1	C19orf44	19	16620384	Silent	SNP	G	TCGA-AC-A3QP-01A-11D-A22X-09	15539908	16620384	42508599	28	24039										
ZNF43	0	genome.wustl.edu	37	chr19	22001917	22001917	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ccaggaagaccaggtttctgTagttctctaacatcacattc	7	11	3	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	22001917	22001917	T	C	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.110	p.Y37C	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	42	0	0	21	6	21.43	-	-	-	C	22001917	T	C	22001917	3	2	258	1	0	0	0	0	1	0	0	0	17999	1638	57	5	2331	5	ZNF43	19	22001917	Missense_Mutation	SNP	T	TCGA-AC-A3QP-01A-11D-A22X-09	5381533	22001917	37127066	29	24040										
ACTRT1	0	genome.wustl.edu	37	chrX	127185892	127185892	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.994628167771038	0.63	2.52	0	1	1	0	ggctgttggctgggttttacTccaagctcccgctcaaagag	12	11	1	1			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	X	127185892	127185892	T	A	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	silent	c.294	p.G98	0.208	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	31	0	0	34	15	30.61	-	-	-	A	127185892	T	A	127185892	2	1	258	1	0	0	0	0	0	0	0	1	218	1538	54	5		5	ACTRT1	23	127185892	Silent	SNP	T	TCGA-AC-A3QP-01A-11D-A22X-09		127185892	28084668	30	24041										
CSMD2	0	genome.wustl.edu	37	chr1	34025030	34025030	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aggttaaactggttaccctgAgtgaggccgttgacagggtt	14	7	0	3			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	34025030	34025030	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.8424	p.T2808	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	27	0	0	28	4	12.5	-	-	-	G	34025030	A	G	34025030	2	3	259	1	0	0	0	0	0	0	0	1	3977	319	11	5		5	CSMD2	1	34025030	Silent	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09		34025030	215225591	1	24042										
EIF2B3	0	genome.wustl.edu	37	chr1	45424509	45424509	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cgttagctcctgagcagtggGcttctggacatatcaggtac	12	10	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	45424509	45424509	G	C	SNP	EIF2B3	ENST00000487532	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF2B3	HGNC	ENSG00000070785	26	0	0	35	9	20	-	-	-	C	45424509	G	C	45424509	1	2	259	0	1	0	0	0	0	0	0	0	5037	1218	42	4		4	EIF2B3	1	45424509	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	11399479	45424509	203826112	2	24043										
KNCN	0	genome.wustl.edu	37	chr1	47013180	47013180	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccctgtgggggcgtccggcgAcaccttgctccaggtcccag	14	16	0	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	47013180	47013180	A	G	SNP	KNCN	ENST00000524908	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	KNCN	HGNC	ENSG00000162456	39	0	0	37	5	11.9	-	-	-	G	47013180	A	G	47013180	1	3	259	0	1	0	0	0	0	0	0	0	8478	290	10	5		5	KNCN	1	47013180	RNA	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	1588671	47013180	202237441	3	24044										
OLFML3	0	genome.wustl.edu	37	chr1	114523105	114523105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	catctccgggagagtggatcGtctggagcgggaggtagact	17	8	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	114523105	114523105	G	A	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	missense	c.266	p.R89H	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	31	0	0	37	9	19.57	-	-	-	A	114523105	G	A	114523105	3	1	259	1	0	0	0	0	1	0	0	0	10932	1145	40	1	272	1	OLFML3	1	114523105	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	67509925	114523105	134727516	4	24045										
RAB13	0	genome.wustl.edu	37	chr1	153954778	153954779	+	RNA	INS	-	-	AC													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccccgtttttatcaacaccaINSacacacacacacacacacac							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	153954778	153954779	-	AC	INS	RAB13	ENST00000462680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	18	0	0	34	6	15	-	-	-	AC	153954779	-	AC	153954778	6	5	259	0	1	1	1	0	0	0	0	0	12982	145	5	0		0	RAB13	1	153954778	RNA	INS	-	TCGA-AC-A3TM-01A-11D-A228-09	39431673	153954778	95295843	5	24046										
MTX1	0	genome.wustl.edu	37	chr1	155181843	155181843	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ggccagtgaggggggtaccaGacaggactccttcctccctg	14	13	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	155181843	155181843	G	T	SNP	MTX1	ENST00000481771	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTX1	HGNC	ENSG00000173171	38	0	0	58	7	10.77	-	-	-	T	155181843	G	T	155181843	1	4	259	0	1	0	0	0	0	0	0	0	10039	957	33	2		2	MTX1	1	155181843	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	1227065	155181843	94068778	6	24047										
SMG7	0	genome.wustl.edu	37	chr1	183511476	183511476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gagaagtgaacagagaccaaGgaagaagttttcctcccaaa	10	8	0	4			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	183511476	183511476	G	A	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.1681	p.G561R	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	14	0	0	19	8	29.63	-	-	-	A	183511476	G	A	183511476	3	1	259	1	0	0	0	0	1	0	0	0	14887	1001	35	4	1735	4	SMG7	1	183511476	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	28329633	183511476	65739145	7	24048										
PTPN14	0	genome.wustl.edu	37	chr1	214705676	214705676	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccagatctccgtgtcctgctAcaccagcttctgggatggct	10	14	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	1	214705676	214705676	A	C	SNP	PTPN14	ENST00000491277	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.344	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104	23	0	0	34	5	12.82	-	-	-	C	214705676	A	C	214705676	1	2	259	0	1	0	0	0	0	0	0	0	12864	406	14	5		5	PTPN14	1	214705676	RNA	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	31194200	214705676	34544945	8	24049										
UGP2	0	genome.wustl.edu	37	chr2	64084005	64084005	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aggcatttacttttttacttGtaaatcaataggttagtatt	6	4	1	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	64084005	64084005	G	A	SNP	UGP2	ENST00000495020	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764	38	0	0	66	11	14.29	-	-	-	A	64084005	G	A	64084005	1	1	259	0	1	0	0	0	0	0	0	0	17040	1392	48	4		4	UGP2	2	64084005	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		64084005	179115368	9	24050										
NPAS2	0	genome.wustl.edu	37	chr2	101437561	101437561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gacgcacctttgacctttctGaagagctgggcaggtcggta	13	10	1	3			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	101437561	101437561	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.73	p.E25K	0.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	34	0	0	54	6	10	-	-	-	A	101437561	G	A	101437561	3	1	259	1	0	0	0	0	1	0	0	0	10635	1305	45	2		2	NPAS2	2	101437561	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	37353556	101437561	141761812	10	24051			1	50		2	2	41	N	G_C	8.398464e-05
NPAS2	0	genome.wustl.edu	37	chr2	101437601	101437601	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aaccagggaagggacaggcaCcacccggctaaattcagaac	11	12	1	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	101437601	101437601	C	G	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.113	p.T38S	0.011	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	28	0	0	58	10	14.71	-	-	-	G	101437601	C	G	101437601	3	3	259	1	0	0	0	0	1	0	0	0	10635	522	18	4		4	NPAS2	2	101437601	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	40	101437601	141761772	11	24052			1	50		2	2	41	N	G_C	8.398464e-05
SCN9A	0	genome.wustl.edu	37	chr2	167085365	167085365	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tgtggtgttaatacactcatAgaacttgccagcaaacaaat	7	8	1	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	167085365	167085365	A	G	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.4045	p.Y1349H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	35	0	0	40	7	14.89	-	-	-	G	167085365	A	G	167085365	3	3	259	1	0	0	0	0	1	0	0	0	14013	420	15	5	1948	5	SCN9A	2	167085365	Missense_Mutation	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	65647764	167085365	76114008	12	24053										
EPHA4	0	genome.wustl.edu	37	chr2	222282765	222282765	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gattgcagggttgtatacggCaactactttattattttcaa	8	6	1	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222282765	222282765	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	30	0	0	43	5	10.42	-	-	-	T	222282765	C	T	222282765	1	4	259	0	1	0	0	0	0	0	0	0	5206	725	25	4		4	EPHA4	2	222282765	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	55197400	222282765	20916608	13	24054			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
EPHA4	0	genome.wustl.edu	37	chr2	222282959	222282959	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aactccagaaatcactcaaaGtttggaacgtgtgaaccgaa	8	9	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222282959	222282959	G	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.516	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	25	0	0	24	5	17.24	-	-	-	T	222282959	G	T	222282959	1	4	259	0	1	0	0	0	0	0	0	0	5206	1044	36	4		4	EPHA4	2	222282959	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	194	222282959	20916414	14	24055			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
EPHA4	0	genome.wustl.edu	37	chr2	222283000	222283000	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	caatgttctgttaatttcttAttcagtatgaactaaattat	4	5	3	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222283000	222283000	A	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	22	0	0	22	6	21.43	-	-	-	T	222283000	A	T	222283000	1	4	259	0	1	0	0	0	0	0	0	0	5206	464	16	5		5	EPHA4	2	222283000	RNA	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	41	222283000	20916373	15	24056			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
EPHA4	0	genome.wustl.edu	37	chr2	222283281	222283281	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gaatacaagaggtctcagaaTgcacacaccagcagtgtagc	10	10	1	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222283281	222283281	T	C	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.938	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	19	0	0	20	5	20	-	-	-	C	222283281	T	C	222283281	1	2	259	0	1	0	0	0	0	0	0	0	5206	1479	51	5		5	EPHA4	2	222283281	RNA	SNP	T	TCGA-AC-A3TM-01A-11D-A228-09	281	222283281	20916092	16	24057			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
EPHA4	0	genome.wustl.edu	37	chr2	222284646	222284646	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tagtcctaagcatgaggctaCgcacatacacacacccgcac	7	15	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222284646	222284646	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	21	0	0	23	9	28.12	-	-	-	T	222284646	C	T	222284646	1	4	259	0	1	0	0	0	0	0	0	0	5206	551	19	1		1	EPHA4	2	222284646	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	1365	222284646	20914727	17	24058			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
EPHA4	0	genome.wustl.edu	37	chr2	222284686	222284686	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cacagacaggcacgcatacaGacacactcacacctatgtac	6	15	1	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	2	222284686	222284686	G	C	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.994	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	22	0	0	23	6	20	-	-	-	C	222284686	G	C	222284686	1	2	259	0	1	0	0	0	0	0	0	0	5206	957	33	2		2	EPHA4	2	222284686	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	40	222284686	20914687	18	24059			2	51	120845164	6	6	1922	N	T_G_C_A	8.821154e-15
RHOA	0	genome.wustl.edu	37	chr3	49413010	49413010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aacaatcaccagtttcttccGgatggcagccattgctgaaa	8	11	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	49413010	49413010	G	A	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.13	p.R5W	0.997	tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	24	0	0	41	12	22.64	-	-	-	A	49413010	G	A	49413010	3	1	259	1	0	0	0	0	1	0	0	0	13415	1115	39	1	584	1	RHOA	3	49413010	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		49413010	148609420	19	24060										
COL6A5	0	genome.wustl.edu	37	chr3	130159281	130159283	+	In_Frame_Del	DEL	CAC	CAC	-													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aaaacagagtttgatttcatCacttatgacaaccaactcct							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	130159281	130159283	CAC	-	DEL	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	in_frame_del	c.6099_6101	p.T2034in_frame_del	0.002:0.018:0.097	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	24	0	0	31	6	16.22	-	-	-	-	130159283	CAC	-	130159281	7	5	259	1	0	1	0	1	0	0	0	0	3732	816	29	0	6233	0	COL6A5	3	130159281	In_Frame_Del	DEL	CAC	TCGA-AC-A3TM-01A-11D-A228-09	80746271	130159281	67863149	20	24061										
GFM1	0	genome.wustl.edu	37	chr3	158367837	158367837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctctgctatggaattgggatCgcaggtctggcaggtgggcg	17	8	2	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	158367837	158367837	C	T	SNP	GFM1	ENST00000264263	human	ensembl	69_37n	1	novel	missense	c.733	p.R245C	0.000	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	37	0	0	80	11	12.09	-	-	-	T	158367837	C	T	158367837	3	4	259	1	0	0	0	0	1	0	0	0	6393	899	31	1		1	GFM1	3	158367837	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	28208556	158367837	39654593	21	24062										
PIK3CA	0	genome.wustl.edu	37	chr3	178922324	178922324	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	caggtatctaccatggaggaGaacccttatgtgacaatgtg	11	8	1	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	178922324	178922324	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1093	p.E365K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	42	0	0	64	10	13.51	-	-	-	A	178922324	G	A	178922324	3	1	259	1	0	0	0	0	1	0	0	0	11987	943	33	2	1111	2	PIK3CA	3	178922324	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	20554487	178922324	19100106	22	24063										
OPA1	0	genome.wustl.edu	37	chr3	193386239	193386239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tgctcttcgtcatggagtccCttttactgagctctgctctg	9	12	4	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	3	193386239	193386239	C	T	SNP	OPA1	ENST00000429164	human	ensembl	69_37n	1	putative	silent	c.222	p.P74	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	OPA1	HGNC	ENSG00000198836	47	0	0	70	10	12.5	-	-	-	T	193386239	C	T	193386239	2	4	259	1	0	0	0	0	0	0	0	1	10944	696	24	4		4	OPA1	3	193386239	Silent	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	14463915	193386239	4636191	23	24064										
TLR1	0	genome.wustl.edu	37	chr4	38798935	38798935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cagctctggaagaaatcagcCgatgggtgggaaactgaatt	13	7	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	4	38798935	38798935	C	T	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	silent	c.1518	p.S506	0.002	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	57	0	0	93	12	11.32	-	-	-	T	38798935	C	T	38798935	2	4	259	1	0	0	0	0	0	0	0	1	16044	639	23	1		1	TLR1	4	38798935	Silent	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		38798935	152355341	24	24065										
ARHGEF38	0	genome.wustl.edu	37	chr4	106580340	106580340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	acagctacctgcagcgatcaAcgggagaggagtcagacttg	13	10	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	4	106580340	106580340	A	G	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	1	putative	missense	c.1363	p.T455A	0.001	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	40	0	0	59	7	10.61	-	-	-	G	106580340	A	G	106580340	3	3	259	1	0	0	0	0	1	0	0	0	909	58	2	5		5	ARHGEF38	4	106580340	Missense_Mutation	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	67781405	106580340	84573936	25	24066										
CTNNA1	0	genome.wustl.edu	37	chr5	138118920	138118920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cctctaataagaagagaggtCgttctaagaaggcccatgtt	10	8	2	3			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	5	138118920	138118920	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	missense	c.160	p.R54C	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	29	0	0	45	14	23.73	-	-	-	T	138118920	C	T	138118920	3	4	259	1	0	0	0	0	1	0	0	0	4044	884	31	1	166	1	CTNNA1	5	138118920	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		138118920	42796340	26	24067										
RNF44	0	genome.wustl.edu	37	chr5	175956177	175956177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctggggggacttggtccgctGgagccagaacttccgagatg	16	10	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	5	175956177	175956177	G	A	SNP	RNF44	ENST00000506378	human	ensembl	69_37n	-1	putative	missense	c.611	p.P204L	0.000	smart_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF44	HGNC	ENSG00000146083	20	0	0	33	6	15	-	-	-	A	175956177	G	A	175956177	3	1	259	1	0	0	0	0	1	0	0	0	13582	1363	47	4		4	RNF44	5	175956177	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	37837257	175956177	4959083	27	24068										
PI16	0	genome.wustl.edu	37	chr6	36929296	36929296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	agaagctccagggtgttgagGagaccaacatcgaattactg	12	8	0	3			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	36929296	36929296	G	A	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	missense	c.463	p.E155K	0.009	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	26	0	0	47	11	18.97	-	-	-	A	36929296	G	A	36929296	3	1	259	1	0	0	0	0	1	0	0	0	11943	1175	41	2	473	2	PI16	6	36929296	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		36929296	134185771	28	24069										
FUCA2	0	genome.wustl.edu	37	chr6	143832677	143832677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cccaggtggggtcgaagcgcGtggcgctgtgggcagggcac	20	11	0	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	6	143832677	143832677	G	A	SNP	FUCA2	ENST00000002165	human	ensembl	69_37n	-1	known	missense	c.95	p.T32M	0.010	pfam_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA2	HGNC	ENSG00000001036	32	0	0	30	8	21.05	-	-	-	A	143832677	G	A	143832677	3	1	259	1	0	0	0	0	1	0	0	0	6144	1145	40	1	1336	1	FUCA2	6	143832677	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	106903381	143832677	27282390	29	24070										
TRIL	0	genome.wustl.edu	37	chr7	28997765	28997765	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccagagtcgctaaatggcctCtttcggacttcgcagcgccg	11	14	1	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	28997765	28997765	C	G	SNP	TRIL	ENST00000322982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734	33	0	0	58	8	12.12	-	-	-	G	28997765	C	G	28997765	1	3	259	0	1	0	0	0	0	0	0	0	16581	928	32	2		2	TRIL	7	28997765	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		28997765	130140898	30	24071										
PCLO	0	genome.wustl.edu	37	chr7	82578885	82578885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gacatagaacgctgcatcatCttggctgtcttaggacttgc	10	10	3	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	7	82578885	82578885	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.11019	p.K3673	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	40	0	0	25	8	24.24	-	-	-	T	82578885	C	T	82578885	2	4	259	1	0	0	0	0	0	0	0	1	11656	912	32	2		2	PCLO	7	82578885	Silent	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	53581120	82578885	76559778	31	24072										
STK3	0	genome.wustl.edu	37	chr8	99895940	99895940	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ttgaagacagaggctgctccGttcctaaggcagatggtaat	12	8	0	4			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	8	99895940	99895940	G	A	SNP	STK3	ENST00000523601	human	ensembl	69_37n	-1	putative	silent	c.45	p.N15	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK3	HGNC	ENSG00000104375	22	0	0	27	4	12.9	-	-	-	A	99895940	G	A	99895940	2	1	259	1	0	0	0	0	0	0	0	1	15386	1160	40	1		1	STK3	8	99895940	Silent	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		99895940	46468082	32	24073										
GOLGA2	0	genome.wustl.edu	37	chr9	131020796	131020798	+	In_Frame_Del	DEL	CCT	CCT	-													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gggctgaggtactgccaccgCctcctcctcctcctcctcct							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	9	131020796	131020798	CCT	-	DEL	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	in_frame_del	c.2146_2144	p.E715in_frame_del	0.000:0.000:0.004	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	29	0	0	20	4	16.67	-	-	-	-	131020798	CCT	-	131020796	7	5	259	1	0	1	0	1	0	0	0	0	6604	739	26	0	886	0	GOLGA2	9	131020796	In_Frame_Del	DEL	CCT	TCGA-AC-A3TM-01A-11D-A228-09		131020796	10192635	33	24074										
FRMPD2	0	genome.wustl.edu	37	chr10	49388901	49388901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tgggcactaagctctgcaccCcagccatgtctagttcttca	8	14	4	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	49388901	49388901	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2735	p.G912E	0.000	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	41	0	0	59	11	15.71	-	-	-	T	49388901	C	T	49388901	3	4	259	1	0	0	0	0	1	0	0	0	6107	623	22	4	1230	4	FRMPD2	10	49388901	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		49388901	86145846	34	24075										
HKDC1	0	genome.wustl.edu	37	chr10	71027231	71027231	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gcctgtggtttgtgttgcagGtgttgatagttgttttaagg	15	3	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	71027231	71027231	G	C	SNP	HKDC1	ENST00000486754	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HKDC1	HGNC	ENSG00000156510	78	0	0	95	11	10.38	-	-	-	C	71027231	G	C	71027231	1	2	259	0	1	0	0	0	0	0	0	0	7244	1276	44	4		4	HKDC1	10	71027231	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	21638330	71027231	64507516	35	24076										
ZNF518A	0	genome.wustl.edu	37	chr10	97922576	97922576	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aaagtgtatgtgttttttcaAtgctagttaactctacaaga	7	5	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	10	97922576	97922576	A	G	SNP	ZNF518A	ENST00000534948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	26	0	0	34	4	10.53	-	-	-	G	97922576	A	G	97922576	1	3	259	0	1	0	0	0	0	0	0	0	18058	116	4	5		5	ZNF518A	10	97922576	RNA	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	26895345	97922576	37612171	36	24077										
TRIM34	0	genome.wustl.edu	37	chr11	5655085	5655085	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	agaaggaagaggaggaagctGagaagctggaagctgacatc	16	5	0	4			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	5655085	5655085	G	A	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	missense	c.1537	p.E513K	0.987	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	27	0	0	27	4	12.9	-	-	-	A	5655085	G	A	5655085	3	1	259	1	0	0	0	0	1	0	0	0	16604	1291	45	2	481	2	TRIM34	11	5655085	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		5655085	129351431	37	24078										
FOLH1	0	genome.wustl.edu	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	53	0	0	42	7	14.29	-	-	-	T	49204779	C	T	49204779	3	4	259	1	0	0	0	0	1	0	0	0	6025	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	43549694	49204779	85801737	38	24079			3	52		2	2	12	N	C_A	2.309648e-05
FOLH1	0	genome.wustl.edu	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	48	0	0	45	8	15.09	-	-	-	G	49204790	A	G	49204790	2	3	259	1	0	0	0	0	0	0	0	1	6025	224	8	5		5	FOLH1	11	49204790	Silent	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	11	49204790	85801726	39	24080			3	52		2	2	12	N	C_A	2.309648e-05
XRRA1	0	genome.wustl.edu	37	chr11	74660143	74660143	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cgacggcagacagtgtaggcGgcaaccgacggccgggacgt	17	12	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	11	74660143	74660143	G	C	SNP	XRRA1	ENST00000524430	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	14	0	0	25	5	16.67	-	-	-	C	74660143	G	C	74660143	1	2	259	0	1	0	0	0	0	0	0	0	17558	1131	39	3		3	XRRA1	11	74660143	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	25455353	74660143	60346373	40	24081										
PIK3C2G	0	genome.wustl.edu	37	chr12	18435399	18435401	+	In_Frame_Del	DEL	CCC	CCC	-													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aaagaatgctcctggggaagCcccataggaaaacatcatgg							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	18435399	18435401	CCC	-	DEL	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	in_frame_del	c.384_386	p.P129in_frame_del	0.001:0.000:0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	33	0	0	48	7	12.73	-	-	-	-	18435401	CCC	-	18435399	7	5	259	1	0	1	0	1	0	0	0	0	11985	738	26	0	386	0	PIK3C2G	12	18435399	In_Frame_Del	DEL	CCC	TCGA-AC-A3TM-01A-11D-A228-09		18435399	115416496	41	24082										
MED21	0	genome.wustl.edu	37	chr12	27181513	27181513	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cattaaacactatgacacatTacctttttagctatttttaa	2	8	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	12	27181513	27181513	T	G	SNP	MED21	ENST00000536503	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	MED21	HGNC	ENSG00000152944	36	0	0	39	6	13.04	-	-	-	G	27181513	T	G	27181513	1	3	259	0	1	0	0	0	0	0	0	0	9510	1769	61	5		5	MED21	12	27181513	RNA	SNP	T	TCGA-AC-A3TM-01A-11D-A228-09	8746114	27181513	106670382	42	24083										
MBNL2	0	genome.wustl.edu	37	chr13	97995412	97995412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tattgttcccggaagtccacCggtcactgtcccgggctcaa	10	14	2	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	13	97995412	97995412	C	T	SNP	MBNL2	ENST00000376673	human	ensembl	69_37n	1	known	missense	c.482	p.P161L	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793	42	0	0	48	6	11.11	-	-	-	T	97995412	C	T	97995412	3	4	259	1	0	0	0	0	1	0	0	0	9425	652	23	1	492	1	MBNL2	13	97995412	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		97995412	17174466	43	24084										
PTPN21	0	genome.wustl.edu	37	chr14	89016855	89016855	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ggagaaagcgatcctctccgGatgggacgaacactgtccgg	14	11	1	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	89016855	89016855	G	T	SNP	PTPN21	ENST00000554628	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPN21	HGNC	ENSG00000070778	15	0	0	28	8	22.22	-	-	-	T	89016855	G	T	89016855	1	4	259	0	1	0	0	0	0	0	0	0	12869	1189	41	2		2	PTPN21	14	89016855	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		89016855	18332685	44	24085										
SLC24A4	0	genome.wustl.edu	37	chr14	92959228	92959228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccttgatcgagggacaaggaGgaaggcagtggaaggaaaga	17	5	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	14	92959228	92959228	G	A	SNP	SLC24A4	ENST00000525557	human	ensembl	69_37n	1	putative	missense	c.1370	p.R457K	0.000	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC24A4	HGNC	ENSG00000140090	33	0	0	31	4	11.43	-	-	-	A	92959228	G	A	92959228	3	1	259	1	0	0	0	0	1	0	0	0	14557	1015	35	4		4	SLC24A4	14	92959228	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	3942373	92959228	14390312	45	24086										
LOXL1	0	genome.wustl.edu	37	chr15	74244344	74244344	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	aaaaccacagggattccggaCgccagaccccattttatact	7	13	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	15	74244344	74244344	C	T	SNP	LOXL1	ENST00000567675	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.103	-	-	-	no_errors	LOXL1	HGNC	ENSG00000129038	53	0	0	47	8	14.55	-	-	-	T	74244344	C	T	74244344	1	4	259	0	1	0	0	0	0	0	0	0	8965	551	19	1		1	LOXL1	15	74244344	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		74244344	28287048	46	24087										
MMP25	0	genome.wustl.edu	37	chr16	3097494	3097494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	agagccctgagaagttgcgcGatgccatcaaagtcatgcag	12	10	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	3097494	3097494	G	A	SNP	MMP25	ENST00000336577	human	ensembl	69_37n	1	known	missense	c.178	p.D60N	0.475	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	65	0	0	108	37	25.52	-	-	-	A	3097494	G	A	3097494	3	1	259	1	0	0	0	0	1	0	0	0	9734	1058	37	1	184	1	MMP25	16	3097494	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		3097494	87257259	47	24088										
ACSM5	0	genome.wustl.edu	37	chr16	20442562	20442562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	attgtggatgatgagggcaaCgtcctgcctcctggagaaga	14	8	0	4			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	20442562	20442562	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	silent	c.1227	p.N409	0.043	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	45	0	0	73	9	10.98	-	-	-	T	20442562	C	T	20442562	2	4	259	1	0	0	0	0	0	0	0	1	187	535	19	1		1	ACSM5	16	20442562	Silent	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	17345068	20442562	69912191	48	24089										
CDH1	0	genome.wustl.edu	37	chr16	68862109	68862110	+	Frame_Shift_Ins	INS	-	-	G													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gctcttgctgtttcttcggaINSggagagcggtggtcaaagag							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	68862109	68862110	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2197_2198	p.R734fs	0.999:1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	70	0	0	56	22	28.21	-	-	-	G	68862110	-	G	68862109	7	5	259	1	0	1	1	0	0	0	0	0	3124	295	11	0	2251	0	CDH1	16	68862109	Frame_Shift_Ins	INS	-	TCGA-AC-A3TM-01A-11D-A228-09	48419547	68862109	21492644	49	24090										
HYDIN	0	genome.wustl.edu	37	chr16	71015329	71015329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ggagatcgaggcagatttggGgaaagattccctctccgctc	13	10	1	3			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	16	71015329	71015329	G	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.4472	p.P1491H	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	41	0	0	41	6	12.77	-	-	-	T	71015329	G	T	71015329	3	4	259	1	0	0	0	0	1	0	0	0	7521	1232	43	4	11122	4	HYDIN	16	71015329	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	2153220	71015329	19339424	50	24091										
RAI1	0	genome.wustl.edu	37	chr17	17698429	17698429	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ttcctgctccagaccccactAcagcagcttttgactgtttc	6	15	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	17698429	17698429	A	G	SNP	RAI1	ENST00000353383	human	ensembl	69_37n	1	known	missense	c.2167	p.T723A	0.001	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	33	0	0	34	4	10.53	-	-	-	G	17698429	A	G	17698429	3	3	259	1	0	0	0	0	1	0	0	0	13090	391	14	5	2169	5	RAI1	17	17698429	Missense_Mutation	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09		17698429	63496781	51	24092										
NF1	0	genome.wustl.edu	37	chr17	29527590	29527590	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctgtcattttcctacttgttCagtccatggtggttgatctt	8	9	3	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	29527590	29527590	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.1039	p.Q347*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	56	0	0	50	12	19.35	-	-	-	T	29527590	C	T	29527590	4	4	259	1	0	0	0	0	0	1	0	0	10428	827	29	2	1073	2	NF1	17	29527590	Nonsense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	11829161	29527590	51667620	52	24093										
TBCD	0	genome.wustl.edu	37	chr17	80895745	80895745	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctttccaagtgcgacactcgTgtgtgtaggcacagtgcaga	12	10	0	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	17	80895745	80895745	T	C	SNP	TBCD	ENST00000539345	human	ensembl	69_37n	1	novel	missense	c.3305	p.V1102A	0.001	NULL	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	45	0	0	51	7	12.07	-	-	-	C	80895745	T	C	80895745	3	2	259	1	0	0	0	0	1	0	0	0	15728	1711	59	5		5	TBCD	17	80895745	Missense_Mutation	SNP	T	TCGA-AC-A3TM-01A-11D-A228-09	51368155	80895745	299465	53	24094										
IMPACT	0	genome.wustl.edu	37	chr18	22028136	22028136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cagctggtgggcgtcttcttCatctcatggaggtaggtgta	14	8	4	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	18	22028136	22028136	C	T	SNP	IMPACT	ENST00000284202	human	ensembl	69_37n	1	known	missense	c.748	p.H250Y	1.000	pfam_Impact_N,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059	51	0	0	44	18	29.03	-	-	-	T	22028136	C	T	22028136	3	4	259	1	0	0	0	0	1	0	0	0	7778	826	29	2	782	2	IMPACT	18	22028136	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		22028136	56049112	54	24095										
ZNF440	0	genome.wustl.edu	37	chr19	11941221	11941221	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctttcaggaacctgacctctTtaggtaaggatgacaatatt	8	8	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	19	11941221	11941221	T	A	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	1	known	missense	c.127	p.L43I	0.116	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	70	0	0	79	12	13.04	-	-	-	A	11941221	T	A	11941221	3	1	259	1	0	0	0	0	1	0	0	0	18009	1838	64	5	133	5	ZNF440	19	11941221	Missense_Mutation	SNP	T	TCGA-AC-A3TM-01A-11D-A228-09		11941221	47187762	55	24096										
OVOL2	0	genome.wustl.edu	37	chr20	18005113	18005113	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gggcctgacgtcactaacggCaactgacaatcttggaatgg	12	10	2	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	18005113	18005113	C	T	SNP	OVOL2	ENST00000483661	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OVOL2	HGNC	ENSG00000125850	13	0	0	12	5	29.41	-	-	-	T	18005113	C	T	18005113	1	4	259	0	1	0	0	0	0	0	0	0	11400	725	25	4		4	OVOL2	20	18005113	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09		18005113	45020407	56	24097										
CEP250	0	genome.wustl.edu	37	chr20	34062642	34062642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tgctgggaagatgagagcaaCgttttggaaaacgccagcat	13	7	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	34062642	34062642	C	T	SNP	CEP250	ENST00000425096	human	ensembl	69_37n	1	novel	missense	c.76	p.R26C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP250	HGNC	ENSG00000126001	40	0	0	54	6	10	-	-	-	T	34062642	C	T	34062642	3	4	259	1	0	0	0	0	1	0	0	0	3281	551	19	1		1	CEP250	20	34062642	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	16057529	34062642	28962878	57	24098										
CSE1L	0	genome.wustl.edu	37	chr20	47713063	47713063	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gcattaaaacaaaggaagttCtccttttgaacttgtcacga	7	8	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	47713063	47713063	C	T	SNP	CSE1L	ENST00000469700	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	CSE1L	HGNC	ENSG00000124207	26	0	0	17	4	19.05	-	-	-	T	47713063	C	T	47713063	1	4	259	0	1	0	0	0	0	0	0	0	3962	928	32	2		2	CSE1L	20	47713063	RNA	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	13650421	47713063	15312457	58	24099										
PRIC285	0	genome.wustl.edu	37	chr20	62202632	62202632	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	cccgctccaagctcctgggaAcctctggctctgcctgtggt	11	16	2	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	20	62202632	62202632	A	G	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	29	0	0	37	7	15.91	-	-	-	G	62202632	A	G	62202632	1	3	259	0	1	0	0	0	0	0	0	0	12566	58	2	5		5	PRIC285	20	62202632	RNA	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	14489569	62202632	822888	59	24100										
MLC1	0	genome.wustl.edu	37	chr22	50506877	50506877	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ctcacttttatggctggcggGtaatccttaaacatctccac	7	12	2	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	50506877	50506877	G	T	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	nonsense	c.879	p.Y293*	0.999	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	38	0	0	25	7	21.88	-	-	-	T	50506877	G	T	50506877	4	4	259	1	0	0	0	0	0	1	0	0	9683	1256	44	4	266	4	MLC1	22	50506877	Nonsense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		50506877	797689	60	24101										
ACR	0	genome.wustl.edu	37	chr22	51183255	51183255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ttggttctaacgctttgcgtAtgattcaatcggccacccct	8	12	2	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	22	51183255	51183255	A	G	SNP	ACR	ENST00000216139	human	ensembl	69_37n	1	known	missense	c.886	p.M296V	0.001	pirsf_Pept_S1A_acrosin	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Pept_S1A_acrosin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ACR	HGNC	ENSG00000100312	18	0	0	25	10	28.57	-	-	-	G	51183255	A	G	51183255	3	3	259	1	0	0	0	0	1	0	0	0	169	449	16	5	904	5	ACR	22	51183255	Missense_Mutation	SNP	A	TCGA-AC-A3TM-01A-11D-A228-09	676378	51183255	121311	61	24102										
TCEANC	0	genome.wustl.edu	37	chrX	13682577	13682577	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tcaaccacaaaagtcaccctGgaactcatcccgcagttaga	6	14	3	1			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	13682577	13682577	G	A	SNP	TCEANC	ENST00000490617	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCEANC	HGNC	ENSG00000176896	44	0	0	75	10	11.63	-	-	-	A	13682577	G	A	13682577	1	1	259	0	1	0	0	0	0	0	0	0	15773	1363	47	4		4	TCEANC	23	13682577	RNA	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09		13682577	141587983	62	24103										
BCORL1	0	genome.wustl.edu	37	chrX	129149548	129149548	+	Missense_Mutation	SNP	G	G	T													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	gccctcagactgggaccctgGcactgtctgttcagcctagc							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	129149548	129149548	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.2800	p.A934S	0.643	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	28	0	0	44	8	15.38	-	-	-	T	129149548	G	T	129149548	3	4	259	1	0	0	0	0	1	0	0	0	1391	1203	42	4	2810	4	BCORL1	23	129149548	Missense_Mutation	SNP	G	TCGA-AC-A3TM-01A-11D-A228-09	115466971	129149548	26121012	63	24104	222	2								
BCORL1	0	genome.wustl.edu	37	chrX	129149549	129149549	+	Missense_Mutation	SNP	C	C	T													0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ccctcagactgggaccctggCactgtctgttcagcctagcg							TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	129149549	129149549	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.2801	p.A934V	0.623	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	28	0	0	43	7	13.73	-	-	-	T	129149549	C	T	129149549	3	4	259	1	0	0	0	0	1	0	0	0	1391	710	25	4	2811	4	BCORL1	23	129149549	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	1	129149549	26121011	64	24105	222	2								
GABRQ	0	genome.wustl.edu	37	chrX	151821277	151821277	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	tccaggctgatgacagtattTttcctaccgaaatccgcaac	7	12	0	2			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	151821277	151821277	T	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	missense	c.1432	p.F478I	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	18	0	0	44	9	16.98	-	-	-	A	151821277	T	A	151821277	3	1	259	1	0	0	0	0	1	0	0	0	6224	1841	64	5	1466	5	GABRQ	23	151821277	Missense_Mutation	SNP	T	TCGA-AC-A3TM-01A-11D-A228-09	22671728	151821277	3449283	65	24106										
MAGEA12	0	genome.wustl.edu	37	chrX	151900503	151900503	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	10	0.104199686203953	1.96881091617934	3.20634920634921	1.68936678614098	0.19838056680162	0.775741978420459	0	ttggaagctcgtctccaggtCaggaaaggtgcttggccctt	13	10	2	0			TCGA-AC-A3TM-01A-11D-A228-09	TCGA-AC-A3TM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e0b7762d-2e9b-4101-b3b8-475d663ebde0	31bb4a32-703d-4924-aa46-216902820061	X	151900503	151900503	C	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.298	p.D100H	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	64	0	0	66	18	21.18	-	-	-	G	151900503	C	G	151900503	3	3	259	1	0	0	0	0	1	0	0	0	9233	826	29	2	650	2	MAGEA12	23	151900503	Missense_Mutation	SNP	C	TCGA-AC-A3TM-01A-11D-A228-09	79226	151900503	3370057	66	24107										
HES3	0	genome.wustl.edu	37	chr1	6304439	6304439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gccgctgatggagaaaaagcGccgggcacgcatcaatgtgt	14	10	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	6304439	6304439	G	A	SNP	HES3	ENST00000377898	human	ensembl	69_37n	1	known	missense	c.14	p.R5H	0.999	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	HES3	HGNC	ENSG00000173673	26	0	0	19	5	20.83	-	-	-	A	6304439	G	A	6304439	3	1	260	1	0	0	0	0	1	0	0	0	7118	1087	38	1	16	1	HES3	1	6304439	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		6304439	242946182	1	24108										
GPR153	0	genome.wustl.edu	37	chr1	6313938	6313938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgggcacggtgaaggcgcggCggtcggcctggcgccccacc	18	15	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	6313938	6313938	C	T	SNP	GPR153	ENST00000377893	human	ensembl	69_37n	-1	known	missense	c.626	p.R209H	0.988	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153,prints_GPCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	58	0	0	30	8	21.05	-	-	-	T	6313938	C	T	6313938	3	4	260	1	0	0	0	0	1	0	0	0	6709	768	27	1	1219	1	GPR153	1	6313938	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	9499	6313938	242936683	2	24109										
CASZ1	0	genome.wustl.edu	37	chr1	10697392	10697392	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atttcctgttgaatcaggtaCgctccgtgcgaccactcctc	8	14	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	10697392	10697392	C	T	SNP	CASZ1	ENST00000478524	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASZ1	HGNC	ENSG00000130940	95	0	0	70	9	11.39	-	-	-	T	10697392	C	T	10697392	1	4	260	0	1	0	0	0	0	0	0	0	2710	551	19	1		1	CASZ1	1	10697392	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	4383454	10697392	238553229	3	24110										
SPEN	0	genome.wustl.edu	37	chr1	16255141	16255142	+	Frame_Shift_Ins	INS	-	-	GA													0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cttttgatccggagagagtgINSgagagagagagacgcttaat							TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	16255141	16255142	-	GA	INS	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_ins	c.2406_2407	p.R806fs	0.001:0.999	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	25	0	0	16	5	23.81	-	-	-	GA	16255142	-	GA	16255141	7	5	260	1	0	1	1	0	0	0	0	0	15129	1335	47	0	2448	0	SPEN	1	16255141	Frame_Shift_Ins	INS	-	TCGA-AC-A3TN-01A-11D-A228-09	5557749	16255141	232995480	4	24111										
MYOM3	0	genome.wustl.edu	37	chr1	24392671	24392671	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tctgcctcttgatccctgccTtactctatttttcttggaaa	5	12	4	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	24392671	24392671	T	C	SNP	MYOM3	ENST00000338909	human	ensembl	69_37n	-1	known	missense	c.28	p.R10G	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	92	0	0	82	12	12.77	-	-	-	C	24392671	T	C	24392671	3	2	260	1	0	0	0	0	1	0	0	0	10165	1624	56	5		5	MYOM3	1	24392671	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	8137530	24392671	224857950	5	24112										
CCDC17	0	genome.wustl.edu	37	chr1	46086329	46086329	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agtggtcaataaaggctggcCgttagccataccagccacac	10	12	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	46086329	46086329	C	T	SNP	CCDC17	ENST00000479529	human	ensembl	69_37n	-1	known	silent	c.1680	p.T560	0.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	32	0	0	21	4	16	-	-	-	T	46086329	C	T	46086329	2	4	260	1	0	0	0	0	0	0	0	1	2819	667	23	1		1	CCDC17	1	46086329	Silent	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	21693658	46086329	203164292	6	24113										
NSUN4	0	genome.wustl.edu	37	chr1	46808224	46808224	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cccttctctcctgggaggcaActgggaactcttacctcatc	8	15	3	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	46808224	46808224	A	C	SNP	NSUN4	ENST00000498008	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	51	0	0	48	6	11.11	-	-	-	C	46808224	A	C	46808224	1	2	260	0	1	0	0	0	0	0	0	0	10753	58	2	5		5	NSUN4	1	46808224	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	721895	46808224	202442397	7	24114										
NSUN4	0	genome.wustl.edu	37	chr1	46827728	46827728	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ggtttccaactcactcattaAcccctaccccatctccaggc	4	18	3	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	46827728	46827728	A	C	SNP	NSUN4	ENST00000307089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	47	0	0	47	9	16.07	-	-	-	C	46827728	A	C	46827728	1	2	260	0	1	0	0	0	0	0	0	0	10753	58	2	5		5	NSUN4	1	46827728	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	19504	46827728	202422893	8	24115										
NSUN4	0	genome.wustl.edu	37	chr1	46827769	46827769	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctgtactaaagtttgctgccCgcttaggggcttagaaggag	13	8	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	46827769	46827769	C	T	SNP	NSUN4	ENST00000307089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	40	0	0	56	9	13.85	-	-	-	T	46827769	C	T	46827769	1	4	260	0	1	0	0	0	0	0	0	0	10753	667	23	1		1	NSUN4	1	46827769	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	41	46827769	202422852	9	24116										
SGIP1	0	genome.wustl.edu	37	chr1	67160981	67160981	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	attgccagccttccctttttCctgcacgctaatggcatgta	7	13	0	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	67160981	67160981	C	T	SNP	SGIP1	ENST00000320161	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.929	-	-	-	no_errors	SGIP1	HGNC	ENSG00000118473	56	0	0	28	8	22.22	-	-	-	T	67160981	C	T	67160981	1	4	260	0	1	0	0	0	0	0	0	0	14294	870	30	2		2	SGIP1	1	67160981	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	20333212	67160981	182089640	10	24117										
RBMXL1	0	genome.wustl.edu	37	chr1	89449434	89449434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tccatatttgccaaatactgTttcaagagctttctcatttg	5	9	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	89449434	89449434	T	C	SNP	RBMXL1	ENST00000321792	human	ensembl	69_37n	-1	known	missense	c.76	p.T26A	0.996	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	63	0	0	60	10	14.29	-	-	-	C	89449434	T	C	89449434	3	2	260	1	0	0	0	0	1	0	0	0	13236	1725	60	5	1100	5	RBMXL1	1	89449434	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	22288453	89449434	159801187	11	24118										
CD53	0	genome.wustl.edu	37	chr1	111415841	111415841	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gataatcactaaattctgccGaaaggactgaggaacggtgc	11	8	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	111415841	111415841	G	A	SNP	CD53	ENST00000468160	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	CD53	HGNC	ENSG00000143119	124	0	0	109	14	11.38	-	-	-	A	111415841	G	A	111415841	1	1	260	0	1	0	0	0	0	0	0	0	3052	1073	37	1		1	CD53	1	111415841	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	21966407	111415841	137834780	12	24119										
DDR2	0	genome.wustl.edu	37	chr1	162746135	162746135	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ggcagtgctccctatccgctGgatgtcttgggagagtatct	13	10	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	162746135	162746135	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	nonsense	c.2258	p.W753*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	55	0	0	51	17	25	-	-	-	A	162746135	G	A	162746135	4	1	260	1	0	0	0	0	0	1	0	0	4368	1357	47	4	2312	4	DDR2	1	162746135	Nonsense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	51330294	162746135	86504486	13	24120										
OBSCN	0	genome.wustl.edu	37	chr1	228465346	228465346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtaaactgcggcccactgacAacgtgcgcatccgccaggaa	11	14	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	1	228465346	228465346	A	G	SNP	OBSCN	ENST00000493813	human	ensembl	69_37n	1	putative	missense	c.277	p.N93D	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	OBSCN	HGNC	ENSG00000154358	88	0	0	55	13	19.12	-	-	-	G	228465346	A	G	228465346	3	3	260	1	0	0	0	0	1	0	0	0	10885	145	5	5		5	OBSCN	1	228465346	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	65719211	228465346	20785275	14	24121										
WDR43	0	genome.wustl.edu	37	chr2	29165225	29165225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcaacttcccctggacagaaGgcaaagttggtgtatgaaga	12	8	0	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	29165225	29165225	G	A	SNP	WDR43	ENST00000446643	human	ensembl	69_37n	1	putative	missense	c.437	p.R146K	0.995	superfamily_ARM-type_fold	pfam_SSU_processome_Utp12,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon	WDR43	HGNC	ENSG00000163811	75	0	0	52	21	28.38	-	-	-	A	29165225	G	A	29165225	3	1	260	1	0	0	0	0	1	0	0	0	17392	991	35	4	1844	4	WDR43	2	29165225	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		29165225	214034148	15	24122										
ANKRD36B	0	genome.wustl.edu	37	chr2	98165911	98165911	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atttttctccatccttttttTctctggctatattcaaaaca	2	10	3	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	124	1	0.8	100	14	12.28	-	-	-	C	98165911	T	C	98165911	1	2	260	0	1	0	0	0	0	0	0	0	665	1783	62	5		5	ANKRD36B	2	98165911	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	69000686	98165911	145033462	16	24123										
CHST10	0	genome.wustl.edu	37	chr2	101031561	101031561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cccctgaactgaggttcttgGttcctcttgtcactggatag	10	11	3	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	101031561	101031561	G	T	SNP	CHST10	ENST00000542617	human	ensembl	69_37n	-1	known	missense	c.54	p.N18K	0.014	NULL	pfam_Sulfotransferase	-	no_errors	CHST10	HGNC	ENSG00000115526	83	0	0	49	11	18.03	-	-	-	T	101031561	G	T	101031561	3	4	260	1	0	0	0	0	1	0	0	0	3427	1276	44	4		4	CHST10	2	101031561	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	2865650	101031561	142167812	17	24124										
RGPD3	0	genome.wustl.edu	37	chr2	107084739	107084739	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tccccgtaggccttgctgcaActcatcgcgccaccaacctg	8	18	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	107084739	107084739	A	G	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.6	p.S2	0.992	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	135	1	0.74	92	13	12.38	-	-	-	G	107084739	A	G	107084739	2	3	260	1	0	0	0	0	0	0	0	1	13370	40	2	5		5	RGPD3	2	107084739	Silent	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	6053178	107084739	136114634	18	24125										
UGGT1	0	genome.wustl.edu	37	chr2	128947505	128947505	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atctttgggattaaagctctGttggatttgtacctcagagg	11	6	3	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	128947505	128947505	G	A	SNP	UGGT1	ENST00000465836	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	UGGT1	HGNC	ENSG00000136731	81	0	0	49	12	19.67	-	-	-	A	128947505	G	A	128947505	1	1	260	0	1	0	0	0	0	0	0	0	17038	1392	48	4		4	UGGT1	2	128947505	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	21862766	128947505	114251868	19	24126										
EPHA4	0	genome.wustl.edu	37	chr2	222282765	222282765	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gattgcagggttgtatacggCaactactttattattttcaa	8	6	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	2	222282765	222282765	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	36	0	0	31	8	20.51	-	-	-	T	222282765	C	T	222282765	1	4	260	0	1	0	0	0	0	0	0	0	5206	725	25	4		4	EPHA4	2	222282765	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	93335260	222282765	20916608	20	24127										
CNTN6	0	genome.wustl.edu	37	chr3	1134445	1134445	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctggaatggcagctgctctCagctctctctgattctgtga	10	12	4	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	1134445	1134445	C	A	SNP	CNTN6	ENST00000397479	human	ensembl	69_37n	1	known	nonsense	c.26	p.S9*	0.046	NULL	NULL	-	no_errors	CNTN6	HGNC	ENSG00000134115	28	0	0	27	5	15.62	-	-	-	A	1134445	C	A	1134445	4	1	260	1	0	0	0	0	0	1	0	0	3675	841	29	2		2	CNTN6	3	1134445	Nonsense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09		1134445	196887985	21	24128										
C3orf32	0	genome.wustl.edu	37	chr3	8757377	8757377	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctaatcctcagagcccgtgcAttcaacaaagatataactgg	7	11	2	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	8757377	8757377	A	G	SNP	C3orf32	ENST00000478513	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf32	HGNC	ENSG00000125046	25	0	0	21	6	22.22	-	-	-	G	8757377	A	G	8757377	1	3	260	0	1	0	0	0	0	0	0	0	2242	232	8	5		5	C3orf32	3	8757377	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	7622932	8757377	189265053	22	24129										
FBXL2	0	genome.wustl.edu	37	chr3	33414628	33414628	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cattgaacatttgaacctcaAtggatgcacaaaaatcactg	6	9	2	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	33414628	33414628	A	G	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	1	known	missense	c.335	p.N112S	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL2	HGNC	ENSG00000153558	59	0	0	34	10	22.73	-	-	-	G	33414628	A	G	33414628	3	3	260	1	0	0	0	0	1	0	0	0	5762	101	4	5	357	5	FBXL2	3	33414628	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	24657251	33414628	164607802	23	24130										
ARPP21	0	genome.wustl.edu	37	chr3	35779750	35779750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tcccagtcagtgcaatatccAgcagtctcttttcctcccca	5	16	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	35779750	35779750	A	G	SNP	ARPP21	ENST00000457165	human	ensembl	69_37n	1	known	missense	c.658	p.S220G	0.693	NULL	NULL	-	no_start_codon	ARPP21	HGNC	ENSG00000172995	89	0	0	61	10	13.89	-	-	-	G	35779750	A	G	35779750	3	3	260	1	0	0	0	0	1	0	0	0	982	203	7	5		5	ARPP21	3	35779750	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	2365122	35779750	162242680	24	24131										
ST3GAL6	0	genome.wustl.edu	37	chr3	98501080	98501080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcccaggaccatgaggcttcCgcctgctggacagcaaggac	13	14	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	98501080	98501080	C	T	SNP	ST3GAL6	ENST00000468553	human	ensembl	69_37n	1	novel	missense	c.365	p.P122L	0.742	NULL	NULL	-	no_errors	ST3GAL6	HGNC	ENSG00000064225	50	0	0	30	5	14.29	-	-	-	T	98501080	C	T	98501080	3	4	260	1	0	0	0	0	1	0	0	0	15310	667	23	1		1	ST3GAL6	3	98501080	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	62721330	98501080	99521350	25	24132										
C3orf52	0	genome.wustl.edu	37	chr3	111849182	111849182	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atttgttactattgcaactgCtactggtctaaacagggccc	8	10	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	111849182	111849182	C	G	SNP	C3orf52	ENST00000467942	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf52	HGNC	ENSG00000114529	37	0	0	38	5	11.63	-	-	-	G	111849182	C	G	111849182	1	3	260	0	1	0	0	0	0	0	0	0	2252	812	28	4		4	C3orf52	3	111849182	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	13348102	111849182	86173248	26	24133										
POPDC2	0	genome.wustl.edu	37	chr3	119361250	119361250	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cagtgggtgggaaaagaggcAtgcctatcagtggccattct	14	8	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	119361250	119361250	A	G	SNP	POPDC2	ENST00000474523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POPDC2	HGNC	ENSG00000121577	35	0	0	24	4	14.29	-	-	-	G	119361250	A	G	119361250	1	3	260	0	1	0	0	0	0	0	0	0	12329	232	8	5		5	POPDC2	3	119361250	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	7512068	119361250	78661180	27	24134										
WDR49	0	genome.wustl.edu	37	chr3	167339312	167339312	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttggcatcaagaggatcataCcaataatccatgcaaattgg	8	8	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	167339312	167339312	C	A	SNP	WDR49	ENST00000479765	human	ensembl	69_37n	-1	putative	missense	c.726	p.W242C	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_EF_HAND_2,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR49	HGNC	ENSG00000174776	50	0	0	31	6	16.22	-	-	-	A	167339312	C	A	167339312	3	1	260	1	0	0	0	0	1	0	0	0	17399	522	18	4		4	WDR49	3	167339312	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	47978062	167339312	30683118	28	24135										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	18	0	0	21	10	32.26	-	-	-	G	178952085	A	G	178952085	3	3	260	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	11612773	178952085	19070345	29	24136										
MYL5	0	genome.wustl.edu	37	chr4	672525	672525	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ccaatgtcttctccaactttGagcagactcagatccaggag	8	12	3	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	4	672525	672525	G	A	SNP	MYL5	ENST00000400159	human	ensembl	69_37n	1	known	missense	c.82	p.E28K	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL5	HGNC	ENSG00000215375	69	0	0	38	15	28.3	-	-	-	A	672525	G	A	672525	3	1	260	1	0	0	0	0	1	0	0	0	10122	1291	45	2	88	2	MYL5	4	672525	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		672525	190481751	30	24137										
AFAP1	0	genome.wustl.edu	37	chr4	7800754	7800754	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agttttcagcttttttccacCgccatccaccctccagtttt	4	15	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	4	7800754	7800754	C	T	SNP	AFAP1	ENST00000513842	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1	HGNC	ENSG00000196526	65	0	0	61	9	12.86	-	-	-	T	7800754	C	T	7800754	1	4	260	0	1	0	0	0	0	0	0	0	353	667	23	1		1	AFAP1	4	7800754	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	7128229	7800754	183353522	31	24138										
BST1	0	genome.wustl.edu	37	chr4	15739416	15739416	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctgaacctgaacaggaaactGtgggaaccatgatggggaag	14	7	0	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	4	15739416	15739416	G	C	SNP	BST1	ENST00000514989	human	ensembl	69_37n	1	putative	missense	c.281	p.C94S	0.001	NULL	pfam_ADP-ribosyl_cyclase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BST1	HGNC	ENSG00000109743	62	0	0	48	6	11.11	-	-	-	C	15739416	G	C	15739416	3	2	260	1	0	0	0	0	1	0	0	0	1541	1392	48	4		4	BST1	4	15739416	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	7938662	15739416	175414860	32	24139										
ZCCHC9	0	genome.wustl.edu	37	chr5	80608545	80608545	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctaaaccaggcccgcttcacGagttagagttgagctcccct	9	14	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	80608545	80608545	G	A	SNP	ZCCHC9	ENST00000506458	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZCCHC9	HGNC	ENSG00000131732	41	0	0	31	4	11.43	-	-	-	A	80608545	G	A	80608545	1	1	260	0	1	0	0	0	0	0	0	0	17691	1073	37	1		1	ZCCHC9	5	80608545	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		80608545	100306715	33	24140										
SSBP2	0	genome.wustl.edu	37	chr5	80716163	80716163	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gaatcacatttggacccgctTtcttcacaaaagaggggaga	10	9	3	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	80716163	80716163	T	G	SNP	SSBP2	ENST00000510060	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSBP2	HGNC	ENSG00000145687	46	0	0	39	6	13.33	-	-	-	G	80716163	T	G	80716163	1	3	260	0	1	0	0	0	0	0	0	0	15271	1856	64	5		5	SSBP2	5	80716163	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	107618	80716163	100199097	34	24141										
PHF15	0	genome.wustl.edu	37	chr5	133861426	133861426	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcagttggaggctattttttGgggggggtgagtagcgtcca	18	5	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	133861426	133861426	G	T	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.42	p.L14F	0.899	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	45	0	0	33	5	13.16	-	-	-	T	133861426	G	T	133861426	3	4	260	1	0	0	0	0	1	0	0	0	11900	1363	47	4		4	PHF15	5	133861426	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	53145263	133861426	47053834	35	24142										
PCDHA4	0	genome.wustl.edu	37	chr5	140187102	140187102	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atccacctggaggtgatcgtAgacaggccgctgcaggtttt	13	10	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	140187102	140187102	A	G	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.330	p.V110	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	83	0	0	77	10	11.49	-	-	-	G	140187102	A	G	140187102	2	3	260	1	0	0	0	0	0	0	0	1	11599	407	15	5		5	PCDHA4	5	140187102	Silent	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	6325676	140187102	40728158	36	24143										
PCDHB16	0	genome.wustl.edu	37	chr5	140563656	140563656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctccctggtctccatcaacGcagacaacggccacctgttc	7	18	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	140563656	140563656	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.1522	p.A508T	0.066	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	71	0	0	61	11	15.28	-	-	-	A	140563656	G	A	140563656	3	1	260	1	0	0	0	0	1	0	0	0	11614	1087	38	1	1524	1	PCDHB16	5	140563656	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	376554	140563656	40351604	37	24144										
PCDHB14	0	genome.wustl.edu	37	chr5	140603611	140603611	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	attagccccaattctcacttCtacattaaaattcccgacag	3	13	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	140603611	140603611	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	silent	c.534	p.F178	0.883	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	27	0	0	18	9	33.33	-	-	-	T	140603611	C	T	140603611	2	4	260	1	0	0	0	0	0	0	0	1	11612	912	32	2		2	PCDHB14	5	140603611	Silent	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	39955	140603611	40311649	38	24145										
GABRP	0	genome.wustl.edu	37	chr5	170232723	170232723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tccattttatttgccaggggGctatgatggaaatgatgtgg	13	5	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	5	170232723	170232723	G	A	SNP	GABRP	ENST00000265294	human	ensembl	69_37n	1	known	missense	c.545	p.G182D	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAp_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRP	HGNC	ENSG00000094755	72	0	0	36	4	10	-	-	-	A	170232723	G	A	170232723	3	1	260	1	0	0	0	0	1	0	0	0	6223	1203	42	4	567	4	GABRP	5	170232723	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	29629112	170232723	10682537	39	24146										
OR10C1	0	genome.wustl.edu	37	chr6	29408468	29408468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtatcctcgttaccatcttcCggatcccatctgttgcgggc	9	14	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	29408468	29408468	C	T	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	missense	c.676	p.R226W	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	64	0	0	48	18	27.27	-	-	-	T	29408468	C	T	29408468	3	4	260	1	0	0	0	0	1	0	0	0	10971	643	23	1	678	1	OR10C1	6	29408468	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09		29408468	141706599	40	24147										
HLA-C	0	genome.wustl.edu	37	chr6	31239577	31239577	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtcgtccacgtagcccactgAgatgaagcggggctctccgc	13	14	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	31239577	31239577	A	C	SNP	HLA-C	ENST00000539307	human	ensembl	69_37n	-1	known	missense	c.253	p.S85A	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-C	HGNC	ENSG00000204525	71	0	0	67	8	10.67	-	-	-	C	31239577	A	C	31239577	3	2	260	1	0	0	0	0	1	0	0	0	7248	304	11	5	986	5	HLA-C	6	31239577	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	1831109	31239577	139875490	41	24148										
NOTCH4	0	genome.wustl.edu	37	chr6	32188297	32188297	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttctcctcacagcttgtgccGccccagccactcacacacac	5	20	3	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	32188297	32188297	G	C	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	silent	c.1044	p.G348	0.470	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	54	0	0	35	5	12.2	-	-	-	C	32188297	G	C	32188297	2	2	260	1	0	0	0	0	0	0	0	1	10623	1074	38	3		3	NOTCH4	6	32188297	Silent	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	948720	32188297	138926770	42	24149										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32557478	32557478	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	accatcagtgtcactgtcagCgctgtcatgcaggagcctcc	10	14	4	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	32557478	32557478	C	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	silent	c.42	p.A14	0.002	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	162	1	0.61	100	12	10.62	-	-	-	A	32557478	C	A	32557478	2	1	260	1	0	0	0	0	0	0	0	1	7259	755	27	3		3	HLA-DRB1	6	32557478	Silent	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	369181	32557478	138557589	43	24150										
VPS52	0	genome.wustl.edu	37	chr6	33232055	33232055	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ccagaacacctgctcatagcGtggcccatgacacaactgtg	9	14	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	33232055	33232055	G	A	SNP	VPS52	ENST00000493674	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS52	HGNC	ENSG00000223501	43	0	0	30	7	18.92	-	-	-	A	33232055	G	A	33232055	1	1	260	0	1	0	0	0	0	0	0	0	17311	1160	40	1		1	VPS52	6	33232055	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	674577	33232055	137883012	44	24151										
PGC	0	genome.wustl.edu	37	chr6	41708938	41708938	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tccagaggcttctctggtagCtggagtgtggagctgggtgg	18	7	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	41708938	41708938	C	G	SNP	PGC	ENST00000425343	human	ensembl	69_37n	-1	known	missense	c.723	p.Q241H	0.000	NULL	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic	-	no_errors	PGC	HGNC	ENSG00000096088	59	0	0	45	14	23.33	-	-	-	G	41708938	C	G	41708938	3	3	260	1	0	0	0	0	1	0	0	0	11859	796	28	4	764	4	PGC	6	41708938	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	8476883	41708938	129406129	45	24152										
ZC3H12D	0	genome.wustl.edu	37	chr6	149782908	149782908	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gatatttgactatcgatgttAgaagtgcaccaaggaaacgt	10	6	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	149782908	149782908	A	G	SNP	ZC3H12D	ENST00000462655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC3H12D	HGNC	ENSG00000178199	69	0	0	41	6	12.77	-	-	-	G	149782908	A	G	149782908	1	3	260	0	1	0	0	0	0	0	0	0	17660	435	15	5		5	ZC3H12D	6	149782908	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	108073970	149782908	21332159	46	24153										
PLG	0	genome.wustl.edu	37	chr6	161173946	161173946	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtatagggtgacagtggaggTcctctggtttgcttcgagaa	15	6	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	6	161173946	161173946	T	G	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	silent	c.2286	p.G762	0.999	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	94	0	0	49	10	16.67	-	-	-	G	161173946	T	G	161173946	2	3	260	1	0	0	0	0	0	0	0	1	12160	1654	58	5		5	PLG	6	161173946	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	11391038	161173946	9941121	47	24154										
ZFAND2A	0	genome.wustl.edu	37	chr7	1192572	1192572	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcattcaattttattatagtCccatctccctcaacaaacaa	2	12	3	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	1192572	1192572	C	A	SNP	ZFAND2A	ENST00000397083	human	ensembl	69_37n	-1	putative	silent	c.588	p.G196	0.002	NULL	pfam_Znf_AN1,smart_Znf_AN1	-	no_stop_codon:bad_bp_length_for_coding_region	ZFAND2A	HGNC	ENSG00000178381	34	0	0	37	8	17.78	-	-	-	A	1192572	C	A	1192572	2	1	260	1	0	0	0	0	0	0	0	1	17723	870	30	2		2	ZFAND2A	7	1192572	Silent	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09		1192572	157946091	48	24155										
CLDN12	0	genome.wustl.edu	37	chr7	90099368	90099368	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgtcatttggtgttggtgggAagacattttaaaggttctag	13	3	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	90099368	90099368	A	G	SNP	CLDN12	ENST00000478752	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.012	-	-	-	no_errors	CLDN12	HGNC	ENSG00000157224	22	0	0	20	8	28.57	-	-	-	G	90099368	A	G	90099368	1	3	260	0	1	0	0	0	0	0	0	0	3504	261	9	5		5	CLDN12	7	90099368	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	88906796	90099368	69039295	49	24156										
STAG3	0	genome.wustl.edu	37	chr7	99795215	99795215	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ccttctcatcatgagtactgCtgtgatccttttgtttttta	6	9	2	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	99795215	99795215	C	G	SNP	STAG3	ENST00000440830	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.096	-	-	-	no_errors	STAG3	HGNC	ENSG00000066923	31	0	0	41	5	10.87	-	-	-	G	99795215	C	G	99795215	1	3	260	0	1	0	0	0	0	0	0	0	15335	812	28	4		4	STAG3	7	99795215	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	9695847	99795215	59343448	50	24157										
PILRB	0	genome.wustl.edu	37	chr7	99954457	99954457	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agctggacatacagatcaggGaggctgtcgtggcagtccat	14	9	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	99954457	99954457	G	T	SNP	PILRB	ENST00000420688	human	ensembl	69_37n	1	known	splice_site	c.1+2	e0+2	0.000	-	-	-	no_errors	PILRB	HGNC	ENSG00000121716	39	0	0	30	7	18.92	-	-	-	T	99954457	G	T	99954457	5	4	260	1	0	0	0	0	0	0	1	0	12000	1189	41	2		2	PILRB	7	99954457	Splice_Site	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	159242	99954457	59184206	51	24158										
FLNC	0	genome.wustl.edu	37	chr7	128485100	128485100	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gctgaccattgagatcctgtCggatgccggggtcaaggccg	15	11	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	128485100	128485100	C	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	nonsense	c.3581	p.S1194*	0.999	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	25	0	0	23	17	42.5	-	-	-	A	128485100	C	A	128485100	4	1	260	1	0	0	0	0	0	1	0	0	5981	893	31	3	3663	3	FLNC	7	128485100	Nonsense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	28530643	128485100	30653563	52	24159										
ZNF786	0	genome.wustl.edu	37	chr7	148769555	148769555	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtttttcctgaattcatagcCtgctggcttcctgcaattga	8	10	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	148769555	148769555	C	G	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.309	p.Q103H	0.067	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	23	0	0	15	8	34.78	-	-	-	G	148769555	C	G	148769555	3	3	260	1	0	0	0	0	1	0	0	0	18251	680	24	4	2043	4	ZNF786	7	148769555	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	20284455	148769555	10369108	53	24160										
ABCB8	0	genome.wustl.edu	37	chr7	150734380	150734380	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttccgctgcaggctgtgacaTtccatgcatggaaggaccat	11	11	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	150734380	150734380	T	C	SNP	ABCB8	ENST00000477092	human	ensembl	69_37n	1	novel	missense	c.1270	p.F424L	0.000	NULL	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	72	0	0	43	5	10.42	-	-	-	C	150734380	T	C	150734380	3	2	260	1	0	0	0	0	1	0	0	0	47	1508	52	5		5	ABCB8	7	150734380	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	1964825	150734380	8404283	54	24161										
SHH	0	genome.wustl.edu	37	chr7	155599095	155599095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gccgtacttgctgcggtcgcGgtcagacgtggtgatgtcca	15	11	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	7	155599095	155599095	G	A	SNP	SHH	ENST00000297261	human	ensembl	69_37n	-1	known	missense	c.457	p.R153C	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,prints_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pfscan_Intein_splice_site,prints_Hedgehog	-	no_errors	SHH	HGNC	ENSG00000164690	60	0	0	31	16	34.04	-	-	-	A	155599095	G	A	155599095	3	1	260	1	0	0	0	0	1	0	0	0	14368	1116	39	1	939	1	SHH	7	155599095	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	4864715	155599095	3539568	55	24162										
USP17L2	0	genome.wustl.edu	37	chr8	11996086	11996086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aagcttcttcctgggagcaaGctgtcttgccacaggagcca	11	12	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	8	11996086	11996086	G	A	SNP	USP17L2	ENST00000333796	human	ensembl	69_37n	-1	known	missense	c.184	p.L62F	0.886	NULL	pfam_Peptidase_C19,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19	-	no_errors	USP17L2	HGNC	ENSG00000223443	27	0	0	19	5	20.83	-	-	-	A	11996086	G	A	11996086	3	1	260	1	0	0	0	0	1	0	0	0	17145	971	34	4	1412	4	USP17L2	8	11996086	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		11996086	134367936	56	24163										
PSCA	0	genome.wustl.edu	37	chr8	143762932	143762932	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctggccatctgtccgcatctGtgtgctgttttccttccacc	8	15	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	8	143762932	143762932	G	A	SNP	PSCA	ENST00000505305	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSCA	HGNC	ENSG00000167653	78	0	0	43	9	17.31	-	-	-	A	143762932	G	A	143762932	1	1	260	0	1	0	0	0	0	0	0	0	12725	1392	48	4		4	PSCA	8	143762932	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	131766846	143762932	2601090	57	24164										
CBWD1	0	genome.wustl.edu	37	chr9	166248	166248	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tggtacttcaagagagcagaGcctaaaagccacattgcccc	9	12	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	166248	166248	G	A	SNP	CBWD1	ENST00000487575	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785	46	0	0	45	7	13.46	-	-	-	A	166248	G	A	166248	1	1	260	0	1	0	0	0	0	0	0	0	2737	986	34	4		4	CBWD1	9	166248	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		166248	141047183	58	24165										
C9orf66	0	genome.wustl.edu	37	chr9	214604	214604	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctcgcagcttcgggcagatGgagcttccggcctgcgcgca	14	15	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	214604	214604	G	T	SNP	C9orf66	ENST00000382387	human	ensembl	69_37n	-1	known	missense	c.793	p.H265N	0.997	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784	32	0	0	19	4	17.39	-	-	-	T	214604	G	T	214604	3	4	260	1	0	0	0	0	1	0	0	0	2515	1348	47	4	98	4	C9orf66	9	214604	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	48356	214604	140998827	59	24166										
FAM75A3	0	genome.wustl.edu	37	chr9	40705798	40705798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgaaggcgtccagctactgcCatcaaagaaacagcctcctt	8	13	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	40705798	40705798	C	A	SNP	FAM75A3	ENST00000356699	human	ensembl	69_37n	1	known	missense	c.3455	p.P1152Q	0.000	NULL	NULL	-	no_errors	FAM75A3	HGNC	ENSG00000147926	36	0	0	52	6	10.34	-	-	-	A	40705798	C	A	40705798	3	1	260	1	0	0	0	0	1	0	0	0	5666	594	21	4	3469	4	FAM75A3	9	40705798	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	40491194	40705798	100507633	60	24167										
FAM75A6	0	genome.wustl.edu	37	chr9	43626820	43626820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgtccctggtgattcgtcccGaagctgcatcagatccagag	11	12	1	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	43626820	43626820	G	C	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.1867	p.R623G	0.003	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	79	0	0	57	9	13.64	-	-	-	C	43626820	G	C	43626820	3	2	260	1	0	0	0	0	1	0	0	0	5667	1057	37	3	2168	3	FAM75A6	9	43626820	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	2921022	43626820	97586611	61	24168										
TRPM3	0	genome.wustl.edu	37	chr9	73391369	73391369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tttgctttcctcttccttttTtctttctctttttagattgg	4	9	3	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	73391369	73391369	T	C	SNP	TRPM3	ENST00000396283	human	ensembl	69_37n	-1	putative	missense	c.799	p.K267E	0.000	NULL	NULL	-	no_errors	TRPM3	HGNC	ENSG00000083067	50	0	0	46	7	13.21	-	-	-	C	73391369	T	C	73391369	3	2	260	1	0	0	0	0	1	0	0	0	16683	1856	64	5		5	TRPM3	9	73391369	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	29764549	73391369	67822062	62	24169										
OR13C5	0	genome.wustl.edu	37	chr9	107361599	107361599	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aggatgaccacatacattatGaagatgagcacaaaaaagag	9	6	0	5			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	107361599	107361599	G	C	SNP	OR13C5	ENST00000374779	human	ensembl	69_37n	-1	known	missense	c.96	p.F32L	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800	22	0	0	18	4	18.18	-	-	-	C	107361599	G	C	107361599	3	2	260	1	0	0	0	0	1	0	0	0	11010	1281	45	2	862	2	OR13C5	9	107361599	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	33970230	107361599	33851832	63	24170										
BRD3	0	genome.wustl.edu	37	chr9	136898627	136898627	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agacctgcacaccatggaacAgaagtagtaatatgaaccac	8	10	0	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	136898627	136898627	A	G	SNP	BRD3	ENST00000473349	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BRD3	HGNC	ENSG00000169925	44	0	0	21	5	19.23	-	-	-	G	136898627	A	G	136898627	1	3	260	0	1	0	0	0	0	0	0	0	1511	203	7	5		5	BRD3	9	136898627	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	29537028	136898627	4314804	64	24171										
OBP2A	0	genome.wustl.edu	37	chr9	138441760	138441760	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cacctggacctaccctccagCcatgacccttccctgctccc	5	22	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	9	138441760	138441760	C	A	SNP	OBP2A	ENST00000340780	human	ensembl	69_37n	1	known	missense	c.657	p.S219R	0.004	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	OBP2A	HGNC	ENSG00000122136	94	0	0	61	9	12.86	-	-	-	A	138441760	C	A	138441760	3	1	260	1	0	0	0	0	1	0	0	0	10883	754	26	4		4	OBP2A	9	138441760	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	1543133	138441760	2771671	65	24172										
HSPA14	0	genome.wustl.edu	37	chr10	14893133	14893133	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atgaaattttagtagcttttGtataaaatctttagcagatc	6	4	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	14893133	14893133	G	A	SNP	HSPA14	ENST00000470430	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPA14	HGNC	ENSG00000187522	22	0	0	17	4	19.05	-	-	-	A	14893133	G	A	14893133	1	1	260	0	1	0	0	0	0	0	0	0	7460	1392	48	4		4	HSPA14	10	14893133	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		14893133	120641614	66	24173										
KIAA1217	0	genome.wustl.edu	37	chr10	24810808	24810808	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gagccacacaagctggacagTctcctgaagcgtgtgcgcag	13	12	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	24810808	24810808	T	C	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.2406	p.S802	0.890	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	46	0	0	21	8	27.59	-	-	-	C	24810808	T	C	24810808	2	2	260	1	0	0	0	0	0	0	0	1	8268	1664	58	5		5	KIAA1217	10	24810808	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	9917675	24810808	110723939	67	24174										
ARHGAP12	0	genome.wustl.edu	37	chr10	32095666	32095666	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aactttcccaaataacggacTatttctggaggaaacctaat	6	9	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	32095666	32095666	T	C	SNP	ARHGAP12	ENST00000492028	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	46	0	0	23	5	17.86	-	-	-	C	32095666	T	C	32095666	1	2	260	0	1	0	0	0	0	0	0	0	867	1537	53	5		5	ARHGAP12	10	32095666	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	7284858	32095666	103439081	68	24175										
NRP1	0	genome.wustl.edu	37	chr10	33483561	33483561	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	accaggtgaaccgctctaagTttttgtattttactgctctt	7	9	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	33483561	33483561	T	A	SNP	NRP1	ENST00000466932	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NRP1	HGNC	ENSG00000099250	67	0	0	41	5	10.64	-	-	-	A	33483561	T	A	33483561	1	1	260	0	1	0	0	0	0	0	0	0	10733	1740	60	5		5	NRP1	10	33483561	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	1387895	33483561	102051186	69	24176										
PGBD3	0	genome.wustl.edu	37	chr10	50724809	50724809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tacgggttgtacagttaggtCggcttttttccatttgcaaa	10	7	0	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	50724809	50724809	C	T	SNP	PGBD3	ENST00000374127	human	ensembl	69_37n	-1	known	missense	c.352	p.D118N	0.334	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251	104	1	0.95	43	20	31.25	-	-	-	T	50724809	C	T	50724809	3	4	260	1	0	0	0	0	1	0	0	0	11856	884	31	1	1433	1	PGBD3	10	50724809	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	17241248	50724809	84809938	70	24177										
AGAP7	0	genome.wustl.edu	37	chr10	51465138	51465138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cgactgcagggccatggcctCgctctggctggtcagctggg	16	13	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	51465138	51465138	C	T	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.1318	p.E440K	0.997	superfamily_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	79	0	0	49	8	14.04	-	-	-	T	51465138	C	T	51465138	3	4	260	1	0	0	0	0	1	0	0	0	373	893	31	1	677	1	AGAP7	10	51465138	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	740329	51465138	84069609	71	24178										
ZNF518A	0	genome.wustl.edu	37	chr10	97922576	97922576	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aaagtgtatgtgttttttcaAtgctagttaactctacaaga	7	5	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	97922576	97922576	A	G	SNP	ZNF518A	ENST00000534948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	40	0	0	29	4	12.12	-	-	-	G	97922576	A	G	97922576	1	3	260	0	1	0	0	0	0	0	0	0	18058	116	4	5		5	ZNF518A	10	97922576	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	46457438	97922576	37612171	72	24179										
SLC18A2	0	genome.wustl.edu	37	chr10	119037009	119037009	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aaactttattttatgtatttAattttattaaatatcataca	1	3	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	119037009	119037009	A	C	SNP	SLC18A2	ENST00000497497	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC18A2	HGNC	ENSG00000165646	41	0	0	43	9	16.98	-	-	-	C	119037009	A	C	119037009	1	2	260	0	1	0	0	0	0	0	0	0	14515	377	13	5		5	SLC18A2	10	119037009	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	21114433	119037009	16497738	73	24180										
LRRC27	0	genome.wustl.edu	37	chr10	134180353	134180353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtttccctctctcctagagcCggagatgggagagaggaggc	15	10	1	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	10	134180353	134180353	C	T	SNP	LRRC27	ENST00000432555	human	ensembl	69_37n	1	known	missense	c.1039	p.R347W	0.003	NULL	NULL	-	no_errors	LRRC27	HGNC	ENSG00000148814	37	0	0	27	6	18.18	-	-	-	T	134180353	C	T	134180353	3	4	260	1	0	0	0	0	1	0	0	0	9047	667	23	1		1	LRRC27	10	134180353	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	15143344	134180353	1354394	74	24181										
DCDC1	0	genome.wustl.edu	37	chr11	31263112	31263112	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctcccttagagacccaaagtAgtcctcgcaaaggtgtgatg	10	11	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	11	31263112	31263112	A	G	SNP	DCDC1	ENST00000534722	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DCDC1	HGNC	ENSG00000188682	50	0	0	27	6	18.18	-	-	-	G	31263112	A	G	31263112	1	3	260	0	1	0	0	0	0	0	0	0	4315	435	15	5		5	DCDC1	11	31263112	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09		31263112	103743404	75	24182										
RASGRP2	0	genome.wustl.edu	37	chr11	64506871	64506871	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	acgtggctgtgggtctccttGaggcgggagatggagctgtg	19	7	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	11	64506871	64506871	G	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	silent	c.774	p.L258	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	56	0	0	33	4	10.81	-	-	-	T	64506871	G	T	64506871	2	4	260	1	0	0	0	0	0	0	0	1	13158	1277	45	2		2	RASGRP2	11	64506871	Silent	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	33243759	64506871	70499645	76	24183										
FOLH1B	0	genome.wustl.edu	37	chr11	89392653	89392653	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tattgaaaattgatattaccAaatctggaacaaccaattta	4	6	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	11	89392653	89392653	A	G	SNP	FOLH1B	ENST00000525540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	15	0	0	15	5	25	-	-	-	G	89392653	A	G	89392653	1	3	260	0	1	0	0	0	0	0	0	0	6026	145	5	5		5	FOLH1B	11	89392653	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	24885782	89392653	45613863	77	24184										
CLSTN3	0	genome.wustl.edu	37	chr12	7310620	7310620	+	Silent	SNP	C	C	T													0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agcagtgactcggaggtggcCgattcccccagcagcgacga							TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	12	7310620	7310620	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	silent	c.2814	p.A938	0.109	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	26	0	0	25	4	13.79	-	-	-	T	7310620	C	T	7310620	2	4	260	1	0	0	0	0	0	0	0	1	3593	639	23	1		1	CLSTN3	12	7310620	Silent	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09		7310620	126541275	78	24185	223	2								
CLSTN3	0	genome.wustl.edu	37	chr12	7310623	7310623	+	Silent	SNP	T	T	C													0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agtgactcggaggtggccgaTtcccccagcagcgacgagag							TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	12	7310623	7310623	T	C	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	silent	c.2817	p.D939	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	26	0	0	25	4	13.79	-	-	-	C	7310623	T	C	7310623	2	2	260	1	0	0	0	0	0	0	0	1	3593	1490	52	5		5	CLSTN3	12	7310623	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	3	7310623	126541272	79	24186	223	2								
SYCP3	0	genome.wustl.edu	37	chr12	102122900	102122900	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cacttacagtttccatcataAtttttttttgcaacatagcc	3	10	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	12	102122900	102122900	A	G	SNP	SYCP3	ENST00000266743	human	ensembl	69_37n	-1	known	missense	c.644	p.I215T	0.999	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351	35	0	0	27	10	27.03	-	-	-	G	102122900	A	G	102122900	3	3	260	1	0	0	0	0	1	0	0	0	15526	101	4	5	74	5	SYCP3	12	102122900	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	94812277	102122900	31728995	80	24187										
POP5	0	genome.wustl.edu	37	chr12	121018862	121018862	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tttcttcctccggcgcctgcCccctccacatcccgccatcc	5	23	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	12	121018862	121018862	C	T	SNP	POP5	ENST00000543355	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	POP5	HGNC	ENSG00000167272	38	0	0	30	13	29.55	-	-	-	T	121018862	C	T	121018862	1	4	260	0	1	0	0	0	0	0	0	0	12327	638	22	4		4	POP5	12	121018862	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	18895962	121018862	12833033	81	24188										
KDM2B	0	genome.wustl.edu	37	chr12	121947738	121947738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtccctgccctcgccctcctCgtccttctcctcctcctcct	4	24	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	12	121947738	121947738	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427K	0.876	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	52	0	0	37	12	24.49	-	-	-	T	121947738	C	T	121947738	3	4	260	1	0	0	0	0	1	0	0	0	8179	893	31	1	2835	1	KDM2B	12	121947738	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	928876	121947738	11904157	82	24189										
C1QTNF9B	0	genome.wustl.edu	37	chr13	24471039	24471039	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgaccggggttcccagggatTccagggtgcccttgcctgca	14	13	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	13	24471039	24471039	T	G	SNP	C1QTNF9B	ENST00000382137	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863	88	0	0	58	11	15.94	-	-	-	G	24471039	T	G	24471039	2	3	260	1	0	0	0	0	0	0	0	1	1990	1770	62	5		5	C1QTNF9B	13	24471039	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09		24471039	90698839	83	24190										
C14orf43	0	genome.wustl.edu	37	chr14	74196792	74196792	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctttggaacttagtctgccTaccacacccaccaaggcaag	7	15	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	14	74196792	74196792	T	C	SNP	C14orf43	ENST00000451078	human	ensembl	69_37n	-1	known	missense	c.1306	p.R436G	0.000	NULL	NULL	-	no_start_codon	C14orf43	HGNC	ENSG00000156030	40	0	0	36	13	26.53	-	-	-	C	74196792	T	C	74196792	3	2	260	1	0	0	0	0	1	0	0	0	1786	1537	53	5		5	C14orf43	14	74196792	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09		74196792	33152748	84	24191										
MAP2K5	0	genome.wustl.edu	37	chr15	67951150	67951150	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	acatagtcacacgcttatgtGctccaacctgttctagtttc	6	12	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	15	67951150	67951150	G	T	SNP	MAP2K5	ENST00000560591	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAP2K5	HGNC	ENSG00000137764	82	0	0	57	7	10.94	-	-	-	T	67951150	G	T	67951150	1	4	260	0	1	0	0	0	0	0	0	0	9311	1334	46	4		4	MAP2K5	15	67951150	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		67951150	34580242	85	24192										
UNC45A	0	genome.wustl.edu	37	chr15	91496462	91496462	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agtggagaggatgatgagctGctacagcgggcagctgccgg	18	8	0	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	15	91496462	91496462	G	T	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	1	known	silent	c.2499	p.L833	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	21	0	0	8	3	27.27	-	-	-	T	91496462	G	T	91496462	2	4	260	1	0	0	0	0	0	0	0	1	17085	1306	46	4		4	UNC45A	15	91496462	Silent	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	23545312	91496462	11034930	86	24193										
CHTF18	0	genome.wustl.edu	37	chr16	840014	840014	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tttccctttgcagctgacccAtctggatggcttcattcctt	7	13	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	840014	840014	A	C	SNP	CHTF18	ENST00000426047	human	ensembl	69_37n	1	novel	silent	c.225	p.P75	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHTF18	HGNC	ENSG00000127586	43	0	0	36	4	10	-	-	-	C	840014	A	C	840014	2	2	260	1	0	0	0	0	0	0	0	1	3443	232	8	5		5	CHTF18	16	840014	Silent	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09		840014	89514739	87	24194										
TPSAB1	0	genome.wustl.edu	37	chr16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ccagccacgtccacacggtcAccctgccccctgcctcagag	8	21	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	1291622	1291622	A	G	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	1	known	missense	c.421	p.T141A	0.983	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	39	0	0	26	3	10.34	-	-	-	G	1291622	A	G	1291622	3	3	260	1	0	0	0	0	1	0	0	0	16519	159	6	5	431	5	TPSAB1	16	1291622	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	451608	1291622	89063131	88	24195										
CLCN7	0	genome.wustl.edu	37	chr16	1499025	1499025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcaccagcatgatggggaagCcgtaggtcacgttgctggtg	16	9	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	1499025	1499025	C	A	SNP	CLCN7	ENST00000382745	human	ensembl	69_37n	-1	known	missense	c.1739	p.G580V	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	49	0	0	18	9	33.33	-	-	-	A	1499025	C	A	1499025	3	1	260	1	0	0	0	0	1	0	0	0	3498	739	26	4	706	4	CLCN7	16	1499025	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	207403	1499025	88855728	89	24196										
ALG1	0	genome.wustl.edu	37	chr16	5135380	5135380	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atttgcacaaagaaaatgctAtttttggagccagaattttc	7	6	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	5135380	5135380	A	G	SNP	ALG1	ENST00000592661	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ALG1	HGNC	ENSG00000033011	24	0	0	40	8	16.67	-	-	-	G	5135380	A	G	5135380	1	3	260	0	1	0	0	0	0	0	0	0	510	464	16	5		5	ALG1	16	5135380	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	3636355	5135380	85219373	90	24197										
SH2B1	0	genome.wustl.edu	37	chr16	28883875	28883875	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cacctgcgtttgtcgctgaaCgaggagggtcagtgccgggt	16	10	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	28883875	28883875	C	A	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.1746	p.N582K	0.815	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	34	0	0	32	4	11.11	-	-	-	A	28883875	C	A	28883875	3	1	260	1	0	0	0	0	1	0	0	0	14315	535	19	3	1772	3	SH2B1	16	28883875	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	23748495	28883875	61470878	91	24198										
ITGAL	0	genome.wustl.edu	37	chr16	30485393	30485393	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cagaagtcaacgccctggagGggaagcgcagggtgcgggtg	19	9	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	30485393	30485393	G	C	SNP	ITGAL	ENST00000562652	human	ensembl	69_37n	1	known	missense	c.169	p.G57R	0.001	NULL	NULL	-	no_errors	ITGAL	HGNC	ENSG00000005844	18	0	0	15	4	21.05	-	-	-	C	30485393	G	C	30485393	3	2	260	1	0	0	0	0	1	0	0	0	7940	1247	43	4		4	ITGAL	16	30485393	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	1601518	30485393	59869360	92	24199										
AMFR	0	genome.wustl.edu	37	chr16	56395610	56395610	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	taaactttgccaataattgtGgataatactggattcttccc	6	8	1	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	56395610	56395610	G	A	SNP	AMFR	ENST00000492830	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	AMFR	HGNC	ENSG00000159461	52	0	0	25	7	21.88	-	-	-	A	56395610	G	A	56395610	1	1	260	0	1	0	0	0	0	0	0	0	571	1363	47	4		4	AMFR	16	56395610	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	25910217	56395610	33959143	93	24200										
CDH1	0	genome.wustl.edu	37	chr16	68842647	68842647	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttttctacagcatcactggcCaaggagctgacacaccccct	7	15	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	68842647	68842647	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	24	0	0	14	13	48.15	-	-	-	T	68842647	C	T	68842647	4	4	260	1	0	0	0	0	0	1	0	0	3124	595	21	4	601	4	CDH1	16	68842647	Nonsense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	12447037	68842647	21512106	94	24201										
BANP	0	genome.wustl.edu	37	chr16	88110422	88110422	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cgcggggaacagcatcctatCaactgaaagagcagccgccg	12	13	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	16	88110422	88110422	C	G	SNP	BANP	ENST00000481948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BANP	HGNC	ENSG00000172530	16	0	0	12	5	29.41	-	-	-	G	88110422	C	G	88110422	1	3	260	0	1	0	0	0	0	0	0	0	1314	841	29	2		2	BANP	16	88110422	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	19267775	88110422	2244331	95	24202										
OR3A3	0	genome.wustl.edu	37	chr17	3324255	3324255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ccgccatggcctatgaccgaCtcctggccatctgccagccc	9	19	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	3324255	3324255	C	T	SNP	OR3A3	ENST00000291231	human	ensembl	69_37n	1	known	missense	c.394	p.L132F	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A3	HGNC	ENSG00000159961	34	0	0	16	6	26.09	-	-	-	T	3324255	C	T	3324255	3	4	260	1	0	0	0	0	1	0	0	0	11112	565	20	4	396	4	OR3A3	17	3324255	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09		3324255	77870955	96	24203										
ATP2A3	0	genome.wustl.edu	37	chr17	3828086	3828086	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cgtctctctgacccttcaccCgcccgggccctgcacatata	7	19	3	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	3828086	3828086	C	G	SNP	ATP2A3	ENST00000397039	human	ensembl	69_37n	-1	known	missense	c.646	p.G216R	0.113	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	ATP2A3	HGNC	ENSG00000074370	73	0	0	32	5	13.51	-	-	-	G	3828086	C	G	3828086	3	3	260	1	0	0	0	0	1	0	0	0	1142	667	23	3		3	ATP2A3	17	3828086	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	503831	3828086	77367124	97	24204										
SENP3	0	genome.wustl.edu	37	chr17	7474992	7474992	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgatttctgatgtgcaggggGtggctacagaaaagcccctt	13	8	1	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	7474992	7474992	G	A	SNP	SENP3	ENST00000578868	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.575	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956	16	0	0	12	4	25	-	-	-	A	7474992	G	A	7474992	1	1	260	0	1	0	0	0	0	0	0	0	14136	1276	44	4		4	SENP3	17	7474992	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	3646906	7474992	73720218	98	24205										
GLP2R	0	genome.wustl.edu	37	chr17	9769199	9769199	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agagaaatgggagcattcccTttggtcacaaggaagacatt	11	7	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	9769199	9769199	T	C	SNP	GLP2R	ENST00000458005	human	ensembl	69_37n	1	putative	silent	c.663	p.P221	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLP2R	HGNC	ENSG00000065325	67	0	0	32	6	15.79	-	-	-	C	9769199	T	C	9769199	2	2	260	1	0	0	0	0	0	0	0	1	6505	1624	56	5		5	GLP2R	17	9769199	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	2294207	9769199	71426011	99	24206										
ZNF286B	0	genome.wustl.edu	37	chr17	18584123	18584123	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctcttctcttggaaatggggAgaatcctgggaagacagaac	12	8	2	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	18584123	18584123	A	G	SNP	ZNF286B	ENST00000443457	human	ensembl	69_37n	-1	putative	missense	c.278	p.L93P	0.982	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	ZNF286B	HGNC	ENSG00000249459	73	0	0	30	5	14.29	-	-	-	G	18584123	A	G	18584123	3	3	260	1	0	0	0	0	1	0	0	0	17920	291	11	5	1523	5	ZNF286B	17	18584123	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	8814924	18584123	62611087	100	24207										
KRTAP4-11	0	genome.wustl.edu	37	chr17	39274069	39274069	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agtggtgtggcaggagactcGgccacagactggacgcaggc	17	10	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	39274069	39274069	G	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	69_37n	-1	known	missense	c.499	p.R167G	0.822	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721	75	0	0	66	15	18.52	-	-	-	C	39274069	G	C	39274069	3	2	260	1	0	0	0	0	1	0	0	0	8603	1124	39	3	92	3	KRTAP4-11	17	39274069	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	20689946	39274069	41921141	101	24208										
NMT1	0	genome.wustl.edu	37	chr17	43183108	43183108	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tcacacacgtgagaatccctGgcaaagggagcagaactgaa	11	10	1	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	43183108	43183108	G	A	SNP	NMT1	ENST00000587120	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	NMT1	HGNC	ENSG00000136448	43	0	0	31	4	11.43	-	-	-	A	43183108	G	A	43183108	1	1	260	0	1	0	0	0	0	0	0	0	10575	1363	47	4		4	NMT1	17	43183108	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	3909039	43183108	38012102	102	24209										
LRRC37A	0	genome.wustl.edu	37	chr17	44374710	44374710	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctactacagaggttaaaccAtctccaaccacggaggagac	8	13	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	44374710	44374710	A	G	SNP	LRRC37A	ENST00000320254	human	ensembl	69_37n	1	known	silent	c.2211	p.P737	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	95	0	0	40	17	29.82	-	-	-	G	44374710	A	G	44374710	2	3	260	1	0	0	0	0	0	0	0	1	9057	204	8	5		5	LRRC37A	17	44374710	Silent	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	1191602	44374710	36820500	103	24210										
CDC27	0	genome.wustl.edu	37	chr17	45214685	45214685	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	aatttaattgcaatatcatgTtcccgttgcagactgaaaca	6	8	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	45214685	45214685	T	C	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	silent	c.1764	p.E588	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	29	0	0	20	3	13.04	-	-	-	C	45214685	T	C	45214685	2	2	260	1	0	0	0	0	0	0	0	1	3095	1722	60	5		5	CDC27	17	45214685	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	839975	45214685	35980525	104	24211										
HEATR6	0	genome.wustl.edu	37	chr17	58136860	58136860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttagacgatcataaggtgcaTttgatactaaatttgcaagg	9	5	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	58136860	58136860	T	C	SNP	HEATR6	ENST00000184956	human	ensembl	69_37n	-1	known	missense	c.1646	p.N549S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097	38	0	0	30	9	23.08	-	-	-	C	58136860	T	C	58136860	3	2	260	1	0	0	0	0	1	0	0	0	7084	1493	52	5	1939	5	HEATR6	17	58136860	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	12922175	58136860	23058350	105	24212										
LRRC37A3	0	genome.wustl.edu	37	chr17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agattcgacctccctagaagActcagaaggctgaactggct	10	11	1	5			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	106	0	0	92	19	17.12	-	-	-	T	62892271	A	T	62892271	3	4	260	1	0	0	0	0	1	0	0	0	9059	275	10	5	3847	5	LRRC37A3	17	62892271	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	4755411	62892271	18302939	106	24213										
CCDC40	0	genome.wustl.edu	37	chr17	78061979	78061979	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctgtccgttgaagaccatgtAggaggccaggtgtggcagct	15	9	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	78061979	78061979	A	C	SNP	CCDC40	ENST00000573903	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC40	HGNC	ENSG00000141519	14	0	0	14	7	33.33	-	-	-	C	78061979	A	C	78061979	1	2	260	0	1	0	0	0	0	0	0	0	2838	435	15	5		5	CCDC40	17	78061979	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	15169708	78061979	3133231	107	24214										
CCDC40	0	genome.wustl.edu	37	chr17	78064015	78064015	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cacgcaggcacgtgcacgaaGaacacgggacgcgcgcaggc	15	14	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	78064015	78064015	G	C	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	1	known	missense	c.2910	p.K970N	0.003	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	41	0	0	19	4	17.39	-	-	-	C	78064015	G	C	78064015	3	2	260	1	0	0	0	0	1	0	0	0	2838	957	33	2		2	CCDC40	17	78064015	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	2036	78064015	3131195	108	24215										
CCDC57	0	genome.wustl.edu	37	chr17	80115447	80115447	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ggcgtgtggaggaagaaggcGgaggaatggggagagggggt	25	2	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	17	80115447	80115447	G	A	SNP	CCDC57	ENST00000327026	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC57	HGNC	ENSG00000176155	21	0	0	27	8	22.86	-	-	-	A	80115447	G	A	80115447	1	1	260	0	1	0	0	0	0	0	0	0	2854	1131	39	1		1	CCDC57	17	80115447	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	2051432	80115447	1079763	109	24216										
CIDEA	0	genome.wustl.edu	37	chr18	12254761	12254761	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gcatctctggccgctgctgcAgtcgcgggcgcagaagaggg	17	12	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	18	12254761	12254761	A	C	SNP	CIDEA	ENST00000522713	human	ensembl	69_37n	1	known	missense	c.379	p.S127R	0.000	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	35	0	0	28	4	12.5	-	-	-	C	12254761	A	C	12254761	3	2	260	1	0	0	0	0	1	0	0	0	3454	203	7	5		5	CIDEA	18	12254761	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09		12254761	65822487	110	24217										
SERPINB10	0	genome.wustl.edu	37	chr18	61575232	61575232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ttcagccacaatctcttactAcaggagcaaattgccaattc	5	12	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	18	61575232	61575232	A	G	SNP	SERPINB10	ENST00000397996	human	ensembl	69_37n	1	putative	missense	c.586	p.T196A	0.794	superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_start_codon:pseudogene:no_stop_codon	SERPINB10	HGNC	ENSG00000242550	43	0	0	62	8	11.43	-	-	-	G	61575232	A	G	61575232	3	3	260	1	0	0	0	0	1	0	0	0	14185	406	14	5		5	SERPINB10	18	61575232	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	49320471	61575232	16502016	111	24218										
NWD1	0	genome.wustl.edu	37	chr19	16842052	16842052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agcactgcctaccctgaagtGccagaccttctgccagaggc	10	15	1	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	16842052	16842052	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.44	p.C15F	0.578	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	41	0	0	21	7	25	-	-	-	T	16842052	G	T	16842052	3	4	260	1	0	0	0	0	1	0	0	0	10854	1334	46	4		4	NWD1	19	16842052	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		16842052	42286931	112	24219										
ZNF585A	0	genome.wustl.edu	37	chr19	37605917	37605917	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctttttaaaagaattttaatGgagctaagaggcatatttac	7	4	0	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	37605917	37605917	G	A	SNP	ZNF585A	ENST00000588723	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.164	-	-	-	no_errors	ZNF585A	HGNC	ENSG00000196967	14	0	0	15	6	28.57	-	-	-	A	37605917	G	A	37605917	1	1	260	0	1	0	0	0	0	0	0	0	18113	1363	47	4		4	ZNF585A	19	37605917	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	20763865	37605917	21523066	113	24220										
ZNF585A	0	genome.wustl.edu	37	chr19	37606028	37606028	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cgtactcaggaatctctcgtTgacttgtcctcattgaccac	7	13	3	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	37606028	37606028	T	C	SNP	ZNF585A	ENST00000588723	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	ZNF585A	HGNC	ENSG00000196967	66	0	0	49	11	18.33	-	-	-	C	37606028	T	C	37606028	1	2	260	0	1	0	0	0	0	0	0	0	18113	1827	63	5		5	ZNF585A	19	37606028	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	111	37606028	21522955	114	24221										
ZNF585A	0	genome.wustl.edu	37	chr19	37642917	37642917	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	acatagggtttctctcctgtGtgaactggctgatgcaccag	11	10	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	37642917	37642917	G	A	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	silent	c.1884	p.H628	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	36	0	0	38	7	15.56	-	-	-	A	37642917	G	A	37642917	2	1	260	1	0	0	0	0	0	0	0	1	18113	1368	48	4		4	ZNF585A	19	37642917	Silent	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	36889	37642917	21486066	115	24222										
FCGBP	0	genome.wustl.edu	37	chr19	40392585	40392585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctcgctggggatacagcccTcgctccccggcgggcaggtg	15	16	0	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	40392585	40392585	T	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.7919	p.E2640A	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	93	0	0	101	14	12.17	-	-	-	G	40392585	T	G	40392585	3	3	260	1	0	0	0	0	1	0	0	0	5824	1551	54	5	8382	5	FCGBP	19	40392585	Missense_Mutation	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	2749668	40392585	18736398	116	24223										
ZNF761	0	genome.wustl.edu	37	chr19	53960224	53960224	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtgaaagacaggagaattcaTactggagagaaaccataaaa	10	5	1	4			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	53960224	53960224	T	C	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	21	0	0	16	6	27.27	-	-	-	C	53960224	T	C	53960224	1	2	260	0	1	0	0	0	0	0	0	0	18230	1421	49	5		5	ZNF761	19	53960224	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09	13567639	53960224	5168759	117	24224										
ZNF761	0	genome.wustl.edu	37	chr19	53960338	53960338	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gaaaccttaccagtgtaatgAgtgtggcaaagcctttagta	10	7	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	19	53960338	53960338	A	G	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.912	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	36	0	0	29	6	17.14	-	-	-	G	53960338	A	G	53960338	1	3	260	0	1	0	0	0	0	0	0	0	18230	319	11	5		5	ZNF761	19	53960338	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	114	53960338	5168645	118	24225										
FKBP1A	0	genome.wustl.edu	37	chr20	1350508	1350508	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	atgaaaacaaaataaaatgaAtaacttgaggtttatggcat	7	3	0	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	20	1350508	1350508	A	G	SNP	FKBP1A	ENST00000460490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.886	-	-	-	no_errors	FKBP1A	HGNC	ENSG00000088832	29	0	0	32	6	15.79	-	-	-	G	1350508	A	G	1350508	1	3	260	0	1	0	0	0	0	0	0	0	5952	116	4	5		5	FKBP1A	20	1350508	RNA	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09		1350508	61675012	119	24226										
ZBP1	0	genome.wustl.edu	37	chr20	56182183	56182183	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtgattcctcagatggatctGggcaaagtaagttgaaaatc	11	6	2	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	20	56182183	56182183	G	C	SNP	ZBP1	ENST00000343535	human	ensembl	69_37n	-1	known	missense	c.1267	p.Q423E	0.038	NULL	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256	8	0	0	13	5	27.78	-	-	-	C	56182183	G	C	56182183	3	2	260	1	0	0	0	0	1	0	0	0	17617	1363	47	4		4	ZBP1	20	56182183	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	54831675	56182183	6843337	120	24227										
PRIC285	0	genome.wustl.edu	37	chr20	62202615	62202615	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	ctgtggtgggctcctgccccGctccaagctcctgggaacct	12	16	0	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	20	62202615	62202615	G	A	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.382	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	45	0	0	46	13	22.03	-	-	-	A	62202615	G	A	62202615	1	1	260	0	1	0	0	0	0	0	0	0	12566	1102	38	1		1	PRIC285	20	62202615	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	6020432	62202615	822905	121	24228										
SAMSN1	0	genome.wustl.edu	37	chr21	15954593	15954593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agagagggttttcaggaaaaGgcttccagtgatgccacatg	13	7	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	21	15954593	15954593	G	A	SNP	SAMSN1	ENST00000285670	human	ensembl	69_37n	-1	novel	missense	c.125	p.P42L	0.013	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	50	0	0	48	10	17.24	-	-	-	A	15954593	G	A	15954593	3	1	260	1	0	0	0	0	1	0	0	0	13916	1015	35	4		4	SAMSN1	21	15954593	Missense_Mutation	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09		15954593	32175302	122	24229										
FAM165B	0	genome.wustl.edu	37	chr21	35774487	35774487	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	tgctctactgttgaatggagGaggattttttttttttttcc	9	5	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	21	35774487	35774487	G	A	SNP	FAM165B	ENST00000481710	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM165B	HGNC	ENSG00000205670	26	0	0	32	5	13.51	-	-	-	A	35774487	G	A	35774487	1	1	260	0	1	0	0	0	0	0	0	0	5520	1189	41	2		2	FAM165B	21	35774487	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	19819894	35774487	12355408	123	24230										
FTCD	0	genome.wustl.edu	37	chr21	47556809	47556809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cctaccctccgggccccacaCgaacaagctgtgtccccacc	7	21	0	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	21	47556809	47556809	C	T	SNP	FTCD	ENST00000446405	human	ensembl	69_37n	-1	putative	missense	c.320	p.R107H	0.000	NULL	pfam_Cyclodeamin/CycHdrlase,superfamily_Cyclodeamin/CycHdrlase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FTCD	HGNC	ENSG00000160282	46	0	0	33	6	15.38	-	-	-	T	47556809	C	T	47556809	3	4	260	1	0	0	0	0	1	0	0	0	6130	551	19	1		1	FTCD	21	47556809	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	11782322	47556809	573086	124	24231										
DIP2A	0	genome.wustl.edu	37	chr21	47983680	47983680	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cacatcagtcctgcaggccaGcttctgagggacgttatttt	10	11	2	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	21	47983680	47983680	G	A	SNP	DIP2A	ENST00000479654	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DIP2A	HGNC	ENSG00000160305	41	0	0	32	4	11.11	-	-	-	A	47983680	G	A	47983680	1	1	260	0	1	0	0	0	0	0	0	0	4563	986	34	4		4	DIP2A	21	47983680	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	426871	47983680	146215	125	24232										
MED15	0	genome.wustl.edu	37	chr22	20862646	20862646	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gtggccccgctcagaggaacTctagcccctcaccaccgact	9	18	3	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	22	20862646	20862646	T	G	SNP	MED15	ENST00000441501	human	ensembl	69_37n	1	known	silent	c.87	p.T29	0.002	NULL	NULL	-	no_errors	MED15	HGNC	ENSG00000099917	53	0	0	47	9	16.07	-	-	-	G	20862646	T	G	20862646	2	3	260	1	0	0	0	0	0	0	0	1	9504	1566	54	5		5	MED15	22	20862646	Silent	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09		20862646	30441920	126	24233										
DEPDC5	0	genome.wustl.edu	37	chr22	32241185	32241185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gctttgtggagggcttgaatCgcattcgcaggcggcatcgc	15	10	0	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	22	32241185	32241185	C	T	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.2983	p.R995C	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	85	0	0	57	21	26.92	-	-	-	T	32241185	C	T	32241185	3	4	260	1	0	0	0	0	1	0	0	0	4478	884	31	1	3088	1	DEPDC5	22	32241185	Missense_Mutation	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	11378539	32241185	19063381	127	24234										
C1QTNF6	0	genome.wustl.edu	37	chr22	37576362	37576362	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	catggagccacggctcctcgGctgtgagcaccagagatcac	12	14	1	2			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	22	37576362	37576362	G	A	SNP	C1QTNF6	ENST00000470655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	C1QTNF6	HGNC	ENSG00000133466	54	0	0	50	8	13.79	-	-	-	A	37576362	G	A	37576362	1	1	260	0	1	0	0	0	0	0	0	0	1986	1218	42	4		4	C1QTNF6	22	37576362	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	5335177	37576362	13728204	128	24235										
ACR	0	genome.wustl.edu	37	chr22	51183017	51183017	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	attgtcctcccagagccttcCgacccctctgggcaggggaa	11	15	1	1			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	22	51183017	51183017	C	T	SNP	ACR	ENST00000527761	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ACR	HGNC	ENSG00000100312	48	0	0	34	8	19.05	-	-	-	T	51183017	C	T	51183017	1	4	260	0	1	0	0	0	0	0	0	0	169	667	23	1		1	ACR	22	51183017	RNA	SNP	C	TCGA-AC-A3TN-01A-11D-A228-09	13606655	51183017	121549	129	24236										
TXLNG	0	genome.wustl.edu	37	chrX	16860134	16860134	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	cactggaatgcatgtgttcaTtgccttgtcctttctctccc	7	13	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	X	16860134	16860134	T	C	SNP	TXLNG	ENST00000485153	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXLNG	HGNC	ENSG00000086712	32	0	0	34	7	17.07	-	-	-	C	16860134	T	C	16860134	1	2	260	0	1	0	0	0	0	0	0	0	16886	1508	52	5		5	TXLNG	23	16860134	RNA	SNP	T	TCGA-AC-A3TN-01A-11D-A228-09		16860134	138410426	130	24237										
SEPT6	0	genome.wustl.edu	37	chrX	118759301	118759301	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	gagttaatcaagcttaccagGaccctgggtctcatgcagca	10	11	2	0			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	X	118759301	118759301	G	A	SNP	SEPT6	ENST00000467310	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEPT6	HGNC	ENSG00000125354	34	0	0	18	11	37.93	-	-	-	A	118759301	G	A	118759301	1	1	260	0	1	0	0	0	0	0	0	0	14156	1189	41	2		2	SEPT6	23	118759301	RNA	SNP	G	TCGA-AC-A3TN-01A-11D-A228-09	101899167	118759301	36511259	131	24238										
AFF2	0	genome.wustl.edu	37	chrX	147800748	147800748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	1	0.66209933936873	1.73091684434968	0.343728167672277	1	1	0	agcatttccgtccttcttcaAgatgaaggtaggcaatatga	9	8	2	3			TCGA-AC-A3TN-01A-11D-A228-09	TCGA-AC-A3TN-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d825f75-6959-459c-841b-e3b2429ec572	969c88bd-6867-4191-91a3-13feecd5a397	X	147800748	147800748	A	G	SNP	AFF2	ENST00000286437	human	ensembl	69_37n	1	known	missense	c.44	p.K15R	0.000	NULL	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	67	0	0	25	4	13.79	-	-	-	G	147800748	A	G	147800748	3	3	260	1	0	0	0	0	1	0	0	0	357	72	3	5	1099	5	AFF2	23	147800748	Missense_Mutation	SNP	A	TCGA-AC-A3TN-01A-11D-A228-09	29041447	147800748	7469812	132	24239										
NADK	0	genome.wustl.edu	37	chr1	1689962	1689962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cacgcttggcgaacacgcggCcgccccatcggtatggtcct	12	16	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	1689962	1689962	C	T	SNP	NADK	ENST00000342348	human	ensembl	69_37n	-1	known	silent	c.9	p.R3	0.001	NULL	pfam_polyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130	70	0	0	54	11	16.92	-	-	-	T	1689962	C	T	1689962	2	4	261	1	0	0	0	0	0	0	0	1	10209	754	26	4		4	NADK	1	1689962	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		1689962	247560659	1	24240										
SDC3	0	genome.wustl.edu	37	chr1	31347230	31347230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cgatggcattgtccaggaggCcagggcccgggcgggcaccc	17	14	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	31347230	31347230	C	T	SNP	SDC3	ENST00000339394	human	ensembl	69_37n	-1	known	missense	c.1076	p.G359D	1.000	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512	62	0	0	36	18	33.33	-	-	-	T	31347230	C	T	31347230	3	4	261	1	0	0	0	0	1	0	0	0	14041	739	26	4	260	4	SDC3	1	31347230	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	29657268	31347230	217903391	2	24241										
SERINC2	0	genome.wustl.edu	37	chr1	31905815	31905815	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cttcctccctcccctgcagtCtgcgctcctcagaccaccgg	7	21	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	31905815	31905815	C	T	SNP	SERINC2	ENST00000373710	human	ensembl	69_37n	1	known	silent	c.1042	p.L348	0.990	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC2	HGNC	ENSG00000168528	50	0	0	28	10	26.32	-	-	-	T	31905815	C	T	31905815	2	4	261	1	0	0	0	0	0	0	0	1	14168	927	32	2		2	SERINC2	1	31905815	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	558585	31905815	217344806	3	24242										
C1orf173	0	genome.wustl.edu	37	chr1	75100419	75100419	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	atcctactcattggactttgAgtatttctagtcctaatggc	7	9	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	75100419	75100419	A	C	SNP	C1orf173	ENST00000479666	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	C1orf173	HGNC	ENSG00000178965	14	0	0	9	5	35.71	-	-	-	C	75100419	A	C	75100419	1	2	261	0	1	0	0	0	0	0	0	0	2033	319	11	5		5	C1orf173	1	75100419	RNA	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	43194604	75100419	174150202	4	24243										
LRIG2	0	genome.wustl.edu	37	chr1	113642885	113642885	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	caaagaaagcattcattggtCttgaatcccttgagcatctg	8	9	3	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	113642885	113642885	C	G	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	missense	c.1225	p.L409V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	52	0	0	40	15	27.27	-	-	-	G	113642885	C	G	113642885	3	3	261	1	0	0	0	0	1	0	0	0	9011	913	32	2	1263	2	LRIG2	1	113642885	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	38542466	113642885	135607736	5	24244										
THEM5	0	genome.wustl.edu	37	chr1	151826027	151826027	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agtcttgctgccacctggaaGcatctccttatcatggccaa	8	13	3	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	151826027	151826027	G	A	SNP	THEM5	ENST00000368817	human	ensembl	69_37n	-1	known	silent	c.15	p.C5	0.001	NULL	pfam_Thioestr_supf	-	no_errors	THEM5	HGNC	ENSG00000196407	47	0	0	37	44	54.32	-	-	-	A	151826027	G	A	151826027	2	1	261	1	0	0	0	0	0	0	0	1	15954	963	34	4		4	THEM5	1	151826027	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	38183142	151826027	97424594	6	24245										
EFNA3	0	genome.wustl.edu	37	chr1	155058949	155058949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gaagagcatcagcgggaccaGccccaaacgggaacacctgc	12	14	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	155058949	155058949	G	T	SNP	EFNA3	ENST00000368408	human	ensembl	69_37n	1	known	missense	c.647	p.S216I	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA3	HGNC	ENSG00000143590	77	0	0	80	11	12.09	-	-	-	T	155058949	G	T	155058949	3	4	261	1	0	0	0	0	1	0	0	0	4987	971	34	4	665	4	EFNA3	1	155058949	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	3232922	155058949	94191672	7	24246										
MSTO1	0	genome.wustl.edu	37	chr1	155584255	155584255	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcagaccaaaaaaaagtagaGaaaggagctgaactccactc	8	9	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	155584255	155584255	G	C	SNP	MSTO1	ENST00000483734	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MSTO1	HGNC	ENSG00000125459	14	0	0	16	8	33.33	-	-	-	C	155584255	G	C	155584255	1	2	261	0	1	0	0	0	0	0	0	0	9966	957	33	2		2	MSTO1	1	155584255	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	525306	155584255	93666366	8	24247										
SMG5	0	genome.wustl.edu	37	chr1	156220862	156220862	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	caaacaccaggatctccaggGgacaggggcagctgggggct	16	11	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	156220862	156220862	G	T	SNP	SMG5	ENST00000476954	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.099	-	-	-	no_errors	SMG5	HGNC	ENSG00000198952	16	0	0	23	11	32.35	-	-	-	T	156220862	G	T	156220862	1	4	261	0	1	0	0	0	0	0	0	0	14885	1247	43	4		4	SMG5	1	156220862	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	636607	156220862	93029759	9	24248										
COPA	0	genome.wustl.edu	37	chr1	160275320	160275320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gacacgaatgttctcatgaaTgttacataaagcatccagtt	7	8	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	160275320	160275320	T	C	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.1597	p.I533V	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	49	0	0	36	25	40.98	-	-	-	C	160275320	T	C	160275320	3	2	261	1	0	0	0	0	1	0	0	0	3757	1464	51	5	2172	5	COPA	1	160275320	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	4054458	160275320	88975301	10	24249										
F5	0	genome.wustl.edu	37	chr1	169483582	169483582	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cacagccaaagagttccaggCgaagtgcaatactttgattc	9	10	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	169483582	169483582	C	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.6659	p.R2220P	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	67	0	0	66	9	12	-	-	-	G	169483582	C	G	169483582	3	3	261	1	0	0	0	0	1	0	0	0	5385	768	27	3	34	3	F5	1	169483582	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	9208262	169483582	79767039	11	24250										
TIMM17A	0	genome.wustl.edu	37	chr1	201926929	201926929	+	RNA	DEL	T	T	-													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gtccttcagacactcggtgaTtttttttttttttccttctc							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	201926929	201926929	T	-	DEL	TIMM17A	ENST00000484647	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIMM17A	HGNC	ENSG00000134375	9	0	0	10	3	23.08	-	-	-	-	201926929	T	-	201926929	6	5	261	0	1	1	0	1	0	0	0	0	16003	1508	52	0		0	TIMM17A	1	201926929	RNA	DEL	T	TCGA-AC-A3W5-01A-11D-A228-09	32443347	201926929	47323692	12	24251										
DYRK3	0	genome.wustl.edu	37	chr1	206821263	206821263	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tacgtggccctaaaaatggtGcgcaatgagaagcgctttca	11	9	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	206821263	206821263	G	T	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	silent	c.720	p.V240	0.994	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	51	0	0	67	9	11.84	-	-	-	T	206821263	G	T	206821263	2	4	261	1	0	0	0	0	0	0	0	1	4892	1306	46	4		4	DYRK3	1	206821263	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	4894334	206821263	42429358	13	24252										
USH2A	0	genome.wustl.edu	37	chr1	216424381	216424381	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgtagattgtagaatccattCtggcactgattgcactgcct	9	9	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	216424381	216424381	C	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.2031	p.Q677H	0.985	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	33	0	0	35	7	16.67	-	-	-	G	216424381	C	G	216424381	3	3	261	1	0	0	0	0	1	0	0	0	17133	912	32	2	13835	2	USH2A	1	216424381	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	9603118	216424381	32826240	14	24253										
DUSP10	0	genome.wustl.edu	37	chr1	221875987	221875987	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	caccccagcctggcagtggaTgagaagccccttcccacact	9	17	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	221875987	221875987	T	A	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.1216	p.I406F	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	34	0	0	31	11	26.19	-	-	-	A	221875987	T	A	221875987	3	1	261	1	0	0	0	0	1	0	0	0	4845	1464	51	5	236	5	DUSP10	1	221875987	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	5451606	221875987	27374634	15	24254										
WDR26	0	genome.wustl.edu	37	chr1	224581617	224581617	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gctggccatcatggatggaaTctgtgggttccagctcacac	12	11	3	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	224581617	224581617	T	C	SNP	WDR26	ENST00000414423	human	ensembl	69_37n	-1	known	missense	c.1873	p.I625V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923	50	0	0	44	15	25.42	-	-	-	C	224581617	T	C	224581617	3	2	261	1	0	0	0	0	1	0	0	0	17380	1435	50	5	120	5	WDR26	1	224581617	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	2705630	224581617	24669004	16	24255										
PSEN2	0	genome.wustl.edu	37	chr1	227069694	227069694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggctgagagccccacgccgcGctcctgccaggagggcaggc	16	16	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	227069694	227069694	G	A	SNP	PSEN2	ENST00000391872	human	ensembl	69_37n	1	known	missense	c.185	p.R62H	0.959	NULL	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	59	0	0	66	13	16.46	-	-	-	A	227069694	G	A	227069694	3	1	261	1	0	0	0	0	1	0	0	0	12731	1087	38	1	88	1	PSEN2	1	227069694	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2488077	227069694	22180927	17	24256										
WDR64	0	genome.wustl.edu	37	chr1	241912945	241912945	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cgagcactgcctacgacgccTcattttcctcaaagcccaag	7	16	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	241912945	241912945	T	G	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	missense	c.1661	p.L554R	0.459	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	46	0	0	74	25	25.25	-	-	-	G	241912945	T	G	241912945	3	3	261	1	0	0	0	0	1	0	0	0	17412	1551	54	5	1711	5	WDR64	1	241912945	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	14843251	241912945	7337676	18	24257										
SMYD3	0	genome.wustl.edu	37	chr1	246490592	246490592	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gaaatgttgaaatgtcattaCgagttgcctgaggccctctt	10	8	2	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	1	246490592	246490592	C	G	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	missense	c.442	p.V148L	0.931	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	56	0	0	56	10	15.15	-	-	-	G	246490592	C	G	246490592	3	3	261	1	0	0	0	0	1	0	0	0	14912	536	19	3	876	3	SMYD3	1	246490592	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	4577647	246490592	2760029	19	24258										
MYT1L	0	genome.wustl.edu	37	chr2	1820415	1820415	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aagacgaaggcgcataaaatGaggatggacatggtgcacgt	14	6	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	1820415	1820415	G	C	SNP	MYT1L	ENST00000471668	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MYT1L	HGNC	ENSG00000186487	70	0	0	62	19	23.46	-	-	-	C	1820415	G	C	1820415	1	2	261	0	1	0	0	0	0	0	0	0	10179	1305	45	2		2	MYT1L	2	1820415	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		1820415	241378958	20	24259										
B3GNT2	0	genome.wustl.edu	37	chr2	62450520	62450520	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agatgattgatatttggtctCagttgcagagtgctcattta	10	5	2	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	62450520	62450520	C	T	SNP	B3GNT2	ENST00000301998	human	ensembl	69_37n	1	known	nonsense	c.1165	p.Q389*	0.919	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT2	HGNC	ENSG00000170340	39	0	0	30	7	18.92	-	-	-	T	62450520	C	T	62450520	4	4	261	1	0	0	0	0	0	1	0	0	1261	827	29	2	1167	2	B3GNT2	2	62450520	Nonsense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	60630105	62450520	180748853	21	24260										
YSK4	0	genome.wustl.edu	37	chr2	135741343	135741343	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aaaatatcttcttttcatttGagatgagaaatttctcctcc	4	8	4	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	135741343	135741343	G	C	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	nonsense	c.3125	p.S1042*	0.848	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	33	0	0	33	7	17.5	-	-	-	C	135741343	G	C	135741343	4	2	261	1	0	0	0	0	0	1	0	0	17592	1294	45	2	873	2	YSK4	2	135741343	Nonsense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	73290823	135741343	107458030	22	24261										
NEB	0	genome.wustl.edu	37	chr2	152506758	152506758	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	atcaggaatgctggtgaactTgtttctgtctggaggctgac	13	7	3	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	152506758	152506758	T	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	nonsense	c.7363	p.K2455*	1.000	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	43	0	0	41	10	19.61	-	-	-	A	152506758	T	A	152506758	4	1	261	1	0	0	0	0	0	1	0	0	10374	1821	63	5	18839	5	NEB	2	152506758	Nonsense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	16765415	152506758	90692615	23	24262										
PRPF40A	0	genome.wustl.edu	37	chr2	153573970	153573970	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	acataccaacaagaagcgatCtgagtggctggcgcccactg	11	12	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	153573970	153573970	C	G	SNP	PRPF40A	ENST00000354363	human	ensembl	69_37n	-1	known	missense	c.6	p.Q2H	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRPF40A	HGNC	ENSG00000196504	39	0	0	41	6	12.77	-	-	-	G	153573970	C	G	153573970	3	3	261	1	0	0	0	0	1	0	0	0	12652	928	32	2		2	PRPF40A	2	153573970	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	1067212	153573970	89625403	24	24263										
PLA2R1	0	genome.wustl.edu	37	chr2	160798454	160798454	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agtgtgcaaatggccacaatGactatcagtgtcagtacaac	9	9	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	160798454	160798454	G	A	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	silent	c.4227	p.V1409	0.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	59	0	0	54	14	20.59	-	-	-	A	160798454	G	A	160798454	2	1	261	1	0	0	0	0	0	0	0	1	12084	1277	45	2		2	PLA2R1	2	160798454	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	7224484	160798454	82400919	25	24264										
TTN	0	genome.wustl.edu	37	chr2	179399058	179399058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggtctttcttgatcagggtgTggtaataacgccggtgtttt	13	6	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	179399058	179399058	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.94580	p.H31527P	1.000	superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0	20	5	20	-	-	-	G	179399058	T	G	179399058	3	3	261	1	0	0	0	0	1	0	0	0	16832	1696	59	5	5715	5	TTN	2	179399058	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	18600604	179399058	63800315	26	24265										
PIKFYVE	0	genome.wustl.edu	37	chr2	209180075	209180075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggatgatgacatggatatccGtcagtttgtccacatcaaaa	9	8	2	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	209180075	209180075	G	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.1985	p.R662L	1.000	pfam_Cpn60/TCP-1	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	41	0	0	31	19	38	-	-	-	T	209180075	G	T	209180075	3	4	261	1	0	0	0	0	1	0	0	0	11998	1145	40	3	2050	3	PIKFYVE	2	209180075	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	29781017	209180075	34019298	27	24266										
CCL20	0	genome.wustl.edu	37	chr2	228680153	228680154	+	RNA	INS	-	-	T													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gtggatccaatacctttcacINSttttttttttttttagcagc							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	2	228680153	228680154	-	T	INS	CCL20	ENST00000473642	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008:0.010	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	21	0	0	16	3	15.79	-	-	-	T	228680154	-	T	228680153	6	5	261	0	1	1	1	0	0	0	0	0	2919	580	20	0		0	CCL20	2	228680153	RNA	INS	-	TCGA-AC-A3W5-01A-11D-A228-09	19500078	228680153	14519220	28	24267										
RAF1	0	genome.wustl.edu	37	chr3	12626146	12626146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agtgttggagcagctcaatgGaagacaggatctgaaacaaa	12	6	2	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	3	12626146	12626146	G	A	SNP	RAF1	ENST00000442415	human	ensembl	69_37n	-1	known	missense	c.1874	p.S625F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155	66	0	0	50	10	16.67	-	-	-	A	12626146	G	A	12626146	3	1	261	1	0	0	0	0	1	0	0	0	13085	1174	41	2	136	2	RAF1	3	12626146	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		12626146	185396284	29	24268										
SCN10A	0	genome.wustl.edu	37	chr3	38802827	38802827	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggtgaggatggtcacatcagCcagtttcttcactgagtgaa	12	8	4	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	3	38802827	38802827	C	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.739	p.A247S	0.838	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	58	0	0	42	6	12.5	-	-	-	A	38802827	C	A	38802827	3	1	261	1	0	0	0	0	1	0	0	0	14000	739	26	4	5219	4	SCN10A	3	38802827	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	26176681	38802827	159219603	30	24269										
CCR2	0	genome.wustl.edu	37	chr3	46399722	46399722	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cctgcttcggtgtcgaaacgAgaagaagaggcatagggcag	15	8	0	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	3	46399722	46399722	A	T	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	1	known	missense	c.704	p.E235V	0.166	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	41	0	0	35	7	16.67	-	-	-	T	46399722	A	T	46399722	3	4	261	1	0	0	0	0	1	0	0	0	2970	304	11	5	706	5	CCR2	3	46399722	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	7596895	46399722	151622708	31	24270										
PLXNB1	0	genome.wustl.edu	37	chr3	48454480	48454480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccattctcccagccacacctGtgaattccttcttgcagcgg	7	16	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	3	48454480	48454480	G	A	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	missense	c.4634	p.T1545I	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	61	0	0	46	8	14.81	-	-	-	A	48454480	G	A	48454480	3	1	261	1	0	0	0	0	1	0	0	0	12197	1377	48	4	1833	4	PLXNB1	3	48454480	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2054758	48454480	149567950	32	24271										
LRRC33	0	genome.wustl.edu	37	chr3	196388546	196388546	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcctcacttttaagaagcctCtgcttcaggtcatcaagagc	7	12	5	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	3	196388546	196388546	C	G	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	missense	c.2032	p.L678V	0.783	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	52	0	0	45	14	23.73	-	-	-	G	196388546	C	G	196388546	3	3	261	1	0	0	0	0	1	0	0	0	9054	912	32	2	2038	2	LRRC33	3	196388546	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	147934066	196388546	1633884	33	24272										
CRMP1	0	genome.wustl.edu	37	chr4	5841382	5841382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggtccccaggctggcggcaaTgggctctccaaaaactaggg	14	12	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	5841382	5841382	T	C	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.1177	p.I393V	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	41	0	0	61	13	17.57	-	-	-	C	5841382	T	C	5841382	3	2	261	1	0	0	0	0	1	0	0	0	3920	1464	51	5	907	5	CRMP1	4	5841382	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09		5841382	185312894	34	24273										
SORCS2	0	genome.wustl.edu	37	chr4	7725558	7725558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	atctaccgcgtgtccgtcagGgcagagaacacggcaggcca	13	13	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	7725558	7725558	G	A	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	1	known	silent	c.2559	p.R853	1.000	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	42	0	0	31	9	22.5	-	-	-	A	7725558	G	A	7725558	2	1	261	1	0	0	0	0	0	0	0	1	15020	1223	43	4		4	SORCS2	4	7725558	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	1884176	7725558	183428718	35	24274										
TMEM165	0	genome.wustl.edu	37	chr4	56283243	56283243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gttgtattttttccagttttGtttggctatgccaccacagt	8	8	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	56283243	56283243	G	A	SNP	TMEM165	ENST00000381334	human	ensembl	69_37n	1	known	silent	c.438	p.L146	1.000	pfam_UPF0016	pfam_UPF0016	-	no_errors	TMEM165	HGNC	ENSG00000134851	36	0	0	36	5	12.2	-	-	-	A	56283243	G	A	56283243	2	1	261	1	0	0	0	0	0	0	0	1	16175	1368	48	4		4	TMEM165	4	56283243	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	48557685	56283243	134871033	36	24275										
UGT2A1	0	genome.wustl.edu	37	chr4	70512828	70512828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cttcccacagtgcttttccaCtgttgaggctggagaaaacc	9	12	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	70512828	70512828	C	T	SNP	UGT2A1	ENST00000503640	human	ensembl	69_37n	-1	known	missense	c.535	p.V179M	0.994	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	59	0	0	42	17	28.81	-	-	-	T	70512828	C	T	70512828	3	4	261	1	0	0	0	0	1	0	0	0	17050	565	20	4	1072	4	UGT2A1	4	70512828	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	14229585	70512828	120641448	37	24276										
WDFY3	0	genome.wustl.edu	37	chr4	85696135	85696135	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tggcattctttgaggcttcaCtataagagaaagaagatttt	9	5	2	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	85696135	85696135	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	splice_site	c.4593-1	e26-1	1.000	-	-	-	no_errors	WDFY3	HGNC	ENSG00000163625	61	0	0	36	24	40	-	-	-	G	85696135	C	G	85696135	5	3	261	1	0	0	0	0	0	0	1	0	17367	579	20	4	6148	4	WDFY3	4	85696135	Splice_Site	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	15183307	85696135	105458141	38	24277										
SEC24B	0	genome.wustl.edu	37	chr4	110454767	110454767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aggttttttacatttgggttGggaaaggctgtgacaataac	12	4	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	110454767	110454767	G	T	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.3514	p.G1172W	1.000	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	51	0	0	40	8	16.67	-	-	-	T	110454767	G	T	110454767	3	4	261	1	0	0	0	0	1	0	0	0	14083	1348	47	4	3600	4	SEC24B	4	110454767	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	24758632	110454767	80699509	39	24278										
EGF	0	genome.wustl.edu	37	chr4	110932572	110932572	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aacccattatggcaacaaagGgccctggacccaccacacca	7	16	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	110932572	110932572	G	C	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	missense	c.3585	p.R1195S	0.002	NULL	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	19	0	0	13	5	27.78	-	-	-	C	110932572	G	C	110932572	3	2	261	1	0	0	0	0	1	0	0	0	4997	1223	43	4	3679	4	EGF	4	110932572	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	477805	110932572	80221704	40	24279										
NPY2R	0	genome.wustl.edu	37	chr4	156136013	156136013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aggagtacaaactcatcttcAcagtgttccacatcatcgcc	6	13	4	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	156136013	156136013	A	C	SNP	NPY2R	ENST00000329476	human	ensembl	69_37n	1	known	missense	c.922	p.T308P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_NPY2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NPY2R	HGNC	ENSG00000185149	31	0	0	18	11	37.93	-	-	-	C	156136013	A	C	156136013	3	2	261	1	0	0	0	0	1	0	0	0	10682	159	6	5	924	5	NPY2R	4	156136013	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	45203441	156136013	35018263	41	24280										
TRIML1	0	genome.wustl.edu	37	chr4	189068232	189068232	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aaggggaatctccccaagccAcctggggacctgttctcact	10	14	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	4	189068232	189068232	A	C	SNP	TRIML1	ENST00000332517	human	ensembl	69_37n	1	known	silent	c.1113	p.P371	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108	52	0	0	48	8	14.29	-	-	-	C	189068232	A	C	189068232	2	2	261	1	0	0	0	0	0	0	0	1	16646	146	6	5		5	TRIML1	4	189068232	Silent	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	32932219	189068232	2086044	42	24281										
C5orf38	0	genome.wustl.edu	37	chr5	2755228	2755228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccgagcgcgaggaacagccgGccccggaggctcgggctcgg	18	15	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	5	2755228	2755228	G	A	SNP	C5orf38	ENST00000397835	human	ensembl	69_37n	1	putative	missense	c.419	p.G140D	0.000	NULL	NULL	-	no_errors	C5orf38	HGNC	ENSG00000186493	28	0	0	18	5	21.74	-	-	-	A	2755228	G	A	2755228	3	1	261	1	0	0	0	0	1	0	0	0	2317	1218	42	4		4	C5orf38	5	2755228	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		2755228	178160032	43	24282										
FYB	0	genome.wustl.edu	37	chr5	39202503	39202503	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggaagaggggcttgggttcaAgatcttgtgatgctgacata	15	5	2	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	5	39202503	39202503	A	C	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	missense	c.590	p.L197R	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	37	0	0	31	11	26.19	-	-	-	C	39202503	A	C	39202503	3	2	261	1	0	0	0	0	1	0	0	0	6173	72	3	5	2001	5	FYB	5	39202503	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	36447275	39202503	141712757	44	24283										
NRG2	0	genome.wustl.edu	37	chr5	139422059	139422059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctaagggctgttccgtgggcTccaggaaaaagatgtagcgc	14	9	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	5	139422059	139422059	T	G	SNP	NRG2	ENST00000545385	human	ensembl	69_37n	-1	known	missense	c.596	p.E199A	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like	-	no_errors	NRG2	HGNC	ENSG00000158458	51	0	0	54	20	27.03	-	-	-	G	139422059	T	G	139422059	3	3	261	1	0	0	0	0	1	0	0	0	10721	1551	54	5	2087	5	NRG2	5	139422059	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	100219556	139422059	41493201	45	24284										
CCDC69	0	genome.wustl.edu	37	chr5	150564003	150564003	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aatatcagatttttctctttCtataacaatgagaatgagct	5	6	3	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	5	150564003	150564003	C	G	SNP	CCDC69	ENST00000355417	human	ensembl	69_37n	-1	known	splice_site	c.616-1	e8-1	1.000	-	-	-	no_errors	CCDC69	HGNC	ENSG00000198624	33	0	0	18	6	25	-	-	-	G	150564003	C	G	150564003	5	3	261	1	0	0	0	0	0	0	1	0	2868	927	32	2	283	2	CCDC69	5	150564003	Splice_Site	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	11141944	150564003	30351257	46	24285										
FAM65B	0	genome.wustl.edu	37	chr6	24836037	24836037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctgccacactggtcccaactCctgtgtcttcagtgagcgct	9	15	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	24836037	24836037	C	T	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.2165	p.G722E	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	106	0	0	112	17	13.18	-	-	-	T	24836037	C	T	24836037	3	4	261	1	0	0	0	0	1	0	0	0	5645	855	30	2	1073	2	FAM65B	6	24836037	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		24836037	146279030	47	24286										
GABBR1	0	genome.wustl.edu	37	chr6	29588977	29588977	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	atctcatccactgtgcagttGatagaagggtcgtagatctt	10	8	2	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	29588977	29588977	G	A	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	silent	c.1224	p.I408	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	49	0	0	56	13	18.84	-	-	-	A	29588977	G	A	29588977	2	1	261	1	0	0	0	0	0	0	0	1	6204	1280	45	2		2	GABBR1	6	29588977	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	4752940	29588977	141526090	48	24287										
GABBR1	0	genome.wustl.edu	37	chr6	29589964	29589964	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tccagcctccttcactcgttCctccaggtcgtccagagtct	7	17	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	29589964	29589964	C	A	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	nonsense	c.982	p.E328*	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	56	0	0	49	20	28.99	-	-	-	A	29589964	C	A	29589964	4	1	261	1	0	0	0	0	0	1	0	0	6204	864	30	2	1963	2	GABBR1	6	29589964	Nonsense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	987	29589964	141525103	49	24288										
HSD17B8	0	genome.wustl.edu	37	chr6	33172845	33172845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gggaaccatgctgccttccaGgctgacgtgtctgaggccag	14	12	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	33172845	33172845	G	A	SNP	HSD17B8	ENST00000374662	human	ensembl	69_37n	1	known	silent	c.219	p.Q73	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH,prints_ADH_insect	-	no_errors	HSD17B8	HGNC	ENSG00000204228	13	0	0	24	6	20	-	-	-	A	33172845	G	A	33172845	2	1	261	1	0	0	0	0	0	0	0	1	7440	991	35	4		4	HSD17B8	6	33172845	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	3582881	33172845	137942222	50	24289										
DNAH8	0	genome.wustl.edu	37	chr6	38899636	38899636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	catggatacatttaaactttAcattactacgaagttaccaa	4	8	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	38899636	38899636	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.10673	p.Y3558C	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	15	0	0	20	13	39.39	-	-	-	G	38899636	A	G	38899636	3	3	261	1	0	0	0	0	1	0	0	0	4642	391	14	5	10959	5	DNAH8	6	38899636	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	5726791	38899636	132215431	51	24290										
FOXP4	0	genome.wustl.edu	37	chr6	41557815	41557815	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccgcagcccctgtcacccctCtacggccccctggcctgggc	10	22	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	41557815	41557815	C	G	SNP	FOXP4	ENST00000307972	human	ensembl	69_37n	1	known	missense	c.1264	p.L422V	0.635	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166	40	0	0	33	5	13.16	-	-	-	G	41557815	C	G	41557815	3	3	261	1	0	0	0	0	1	0	0	0	6077	912	32	2	1302	2	FOXP4	6	41557815	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	2658179	41557815	129557252	52	24291										
CLIC5	0	genome.wustl.edu	37	chr6	46047560	46047560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttactgtgctgaatggtgaaGcttgaaggagaaggcagatc	14	5	0	5			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	46047560	46047560	G	T	SNP	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	missense	c.420	p.S140R	0.629	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782	37	0	0	43	6	12.24	-	-	-	T	46047560	G	T	46047560	3	4	261	1	0	0	0	0	1	0	0	0	3559	962	34	4	903	4	CLIC5	6	46047560	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	4489745	46047560	125067507	53	24292										
VNN2	0	genome.wustl.edu	37	chr6	133078957	133078957	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcagctataaaactgtcctgAgtaccaacctgcagggttat	9	10	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	6	133078957	133078957	A	T	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	silent	c.66	p.T22	0.000	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	29	0	0	30	4	11.76	-	-	-	T	133078957	A	T	133078957	2	4	261	1	0	0	0	0	0	0	0	1	17280	291	11	5		5	VNN2	6	133078957	Silent	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	87031397	133078957	38036110	54	24293										
VSTM2A	0	genome.wustl.edu	37	chr7	54636793	54636793	+	RNA	DEL	T	T	-													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctttaatctaaagtgctgacTtttttccaatatcactttct							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	7	54636793	54636793	T	-	DEL	VSTM2A	ENST00000466888	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VSTM2A	HGNC	ENSG00000170419	96	0	0	89	39	30.47	-	-	-	-	54636793	T	-	54636793	6	5	261	0	1	1	0	1	0	0	0	0	17326	1624	56	0		0	VSTM2A	7	54636793	RNA	DEL	T	TCGA-AC-A3W5-01A-11D-A228-09		54636793	104501870	55	24294										
PON3	0	genome.wustl.edu	37	chr7	94989421	94989421	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcaccctgggcttctcagacAaaacattctggatgcgaagt	9	11	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	7	94989421	94989421	A	C	SNP	PON3	ENST00000265627	human	ensembl	69_37n	-1	known	missense	c.929	p.L310W	0.231	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	40	0	0	19	4	17.39	-	-	-	C	94989421	A	C	94989421	3	2	261	1	0	0	0	0	1	0	0	0	12324	131	5	5	139	5	PON3	7	94989421	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	40352628	94989421	64149242	56	24295										
LAMB4	0	genome.wustl.edu	37	chr7	107717415	107717415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	caccaggacatgtgaatgagCgtgggactctccttgcaaag	12	10	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	7	107717415	107717415	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.2098	p.A700T	0.001	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	28	0	0	25	4	13.79	-	-	-	T	107717415	C	T	107717415	3	4	261	1	0	0	0	0	1	0	0	0	8667	768	27	1	3259	1	LAMB4	7	107717415	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	12727994	107717415	51421248	57	24296										
CADPS2	0	genome.wustl.edu	37	chr7	122078500	122078500	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttctgctggtatgggagtggCaatatctttcattaaaacct	9	7	3	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	7	122078500	122078500	C	A	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.2371	p.A791S	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	43	0	0	34	7	17.07	-	-	-	A	122078500	C	A	122078500	3	1	261	1	0	0	0	0	1	0	0	0	2596	710	25	4	1619	4	CADPS2	7	122078500	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	14361085	122078500	37060163	58	24297										
RNF148	0	genome.wustl.edu	37	chr7	122342418	122342418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cccgtaccttgatagttgtaGatgatcaccccatttgctcc	7	13	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	7	122342418	122342418	G	C	SNP	RNF148	ENST00000434824	human	ensembl	69_37n	-1	known	missense	c.387	p.I129M	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	80	0	0	52	19	26.76	-	-	-	C	122342418	G	C	122342418	3	2	261	1	0	0	0	0	1	0	0	0	13535	932	33	2	534	2	RNF148	7	122342418	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	263918	122342418	36796245	59	24298										
XKR6	0	genome.wustl.edu	37	chr8	10782233	10782233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccaggaaggtctccaggaggCgcagcatgttgacgtctgca	14	11	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	8	10782233	10782233	C	T	SNP	XKR6	ENST00000416569	human	ensembl	69_37n	-1	known	missense	c.872	p.R291H	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044	71	0	0	41	6	12.77	-	-	-	T	10782233	C	T	10782233	3	4	261	1	0	0	0	0	1	0	0	0	17532	768	27	1	1061	1	XKR6	8	10782233	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		10782233	135581789	60	24299										
GPR124	0	genome.wustl.edu	37	chr8	37686409	37686409	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgcacttgcctctgcagggaCctgaggaacaacatcatcag	10	12	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	8	37686409	37686409	C	G	SNP	GPR124	ENST00000412232	human	ensembl	69_37n	1	known	missense	c.342	p.D114E	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR124	HGNC	ENSG00000020181	62	0	0	26	7	21.21	-	-	-	G	37686409	C	G	37686409	3	3	261	1	0	0	0	0	1	0	0	0	6688	506	18	4	331	4	GPR124	8	37686409	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	26904176	37686409	108677613	61	24300										
PLEC	0	genome.wustl.edu	37	chr8	145049453	145049453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tttcccaaggttccagggcaGtgtgtccccagggctgggcg	15	12	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	8	145049453	145049453	G	A	SNP	PLEC	ENST00000436759	human	ensembl	69_37n	-1	known	silent	c.85	p.L29	0.815	NULL	pfam_Plectin_repeat,pfam_CH-domain,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	75	0	0	93	14	13.08	-	-	-	A	145049453	G	A	145049453	2	1	261	1	0	0	0	0	0	0	0	1	12126	1020	36	4		4	PLEC	8	145049453	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	107363044	145049453	1314569	62	24301										
ARID3C	0	genome.wustl.edu	37	chr9	34625785	34625785	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcatccagaaattccttcctCttggggtctgcatcgagctc	8	13	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	9	34625785	34625785	C	G	SNP	ARID3C	ENST00000378909	human	ensembl	69_37n	-1	known	missense	c.345	p.K115N	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3C	HGNC	ENSG00000205143	44	0	0	31	10	24.39	-	-	-	G	34625785	C	G	34625785	3	3	261	1	0	0	0	0	1	0	0	0	920	912	32	2	916	2	ARID3C	9	34625785	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		34625785	106587646	63	24302										
NAA35	0	genome.wustl.edu	37	chr9	88581515	88581515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cacctcttgatctcagatttCgcggctcctagaactgattg	8	12	2	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	9	88581515	88581515	C	T	SNP	NAA35	ENST00000416045	human	ensembl	69_37n	1	known	missense	c.521	p.S174L	0.020	NULL	pfam_NatC_AcTrfase_Mak10	-	no_stop_codon:bad_bp_length_for_coding_region	NAA35	HGNC	ENSG00000135040	76	0	0	34	24	41.38	-	-	-	T	88581515	C	T	88581515	3	4	261	1	0	0	0	0	1	0	0	0	10195	899	31	1		1	NAA35	9	88581515	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	53955730	88581515	52631916	64	24303										
GALNT12	0	genome.wustl.edu	37	chr9	101594189	101594189	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctggtgttcacgtggcacacAgttcctgagagggagaggat	15	8	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	9	101594189	101594189	A	T	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	silent	c.867	p.T289	0.021	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	43	0	0	31	14	31.11	-	-	-	T	101594189	A	T	101594189	2	4	261	1	0	0	0	0	0	0	0	1	6260	175	7	5		5	GALNT12	9	101594189	Silent	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	13012674	101594189	39619242	65	24304										
KIF12	0	genome.wustl.edu	37	chr9	116860125	116860125	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aaacgtgccaagttcccaaaCaatggctcatttaattcata	5	10	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	9	116860125	116860125	C	A	SNP	KIF12	ENST00000491059	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIF12	HGNC	ENSG00000136883	19	0	0	12	12	50	-	-	-	A	116860125	C	A	116860125	1	1	261	0	1	0	0	0	0	0	0	0	8325	493	17	4		4	KIF12	9	116860125	RNA	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	15265936	116860125	24353306	66	24305										
GAPVD1	0	genome.wustl.edu	37	chr9	128122822	128122822	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cttaggtttatcttcgagaaGcaccatggccatctgcacaa	8	11	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	9	128122822	128122822	G	C	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.4141	p.A1381P	1.000	pfscan_VPS9	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	69	0	0	43	14	24.56	-	-	-	C	128122822	G	C	128122822	3	2	261	1	0	0	0	0	1	0	0	0	6289	971	34	4	4239	4	GAPVD1	9	128122822	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	11262697	128122822	13090609	67	24306										
PITRM1	0	genome.wustl.edu	37	chr10	3205939	3205939	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agcattgcttgggtgatagtGagtggcatgaaactgcttaa	13	5	0	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	10	3205939	3205939	G	T	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.769	p.H257N	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	34	0	0	33	4	10.81	-	-	-	T	3205939	G	T	3205939	3	4	261	1	0	0	0	0	1	0	0	0	12027	1290	45	2	2428	2	PITRM1	10	3205939	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		3205939	132328808	68	24307										
SIRT1	0	genome.wustl.edu	37	chr10	69672314	69672314	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttgatgtagagcttcttggaGactgtgatgtcataattaat	10	4	2	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	10	69672314	69672314	G	A	SNP	SIRT1	ENST00000212015	human	ensembl	69_37n	1	known	missense	c.1441	p.D481N	1.000	pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT1	HGNC	ENSG00000096717	37	0	0	19	4	17.39	-	-	-	A	69672314	G	A	69672314	3	1	261	1	0	0	0	0	1	0	0	0	14426	942	33	2	1471	2	SIRT1	10	69672314	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	66466375	69672314	65862433	69	24308										
DUSP13	0	genome.wustl.edu	37	chr10	76857643	76857643	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgcttctgcagtgagtccatCctggaacagagtggacaccg	12	11	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	10	76857643	76857643	C	T	SNP	DUSP13	ENST00000491677	human	ensembl	69_37n	-1	known	silent	c.387	p.R129	0.999	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	31	0	0	23	6	20.69	-	-	-	T	76857643	C	T	76857643	2	4	261	1	0	0	0	0	0	0	0	1	4848	869	30	2		2	DUSP13	10	76857643	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	7185329	76857643	58677104	70	24309										
PPRC1	0	genome.wustl.edu	37	chr10	103904474	103904474	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctccatcctgttctgccaagCatgttcccctccacattgat	5	16	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	10	103904474	103904474	C	T	SNP	PPRC1	ENST00000462933	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.144	-	-	-	no_errors	PPRC1	HGNC	ENSG00000148840	11	0	0	6	6	50	-	-	-	T	103904474	C	T	103904474	1	4	261	0	1	0	0	0	0	0	0	0	12487	725	25	4		4	PPRC1	10	103904474	RNA	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	27046831	103904474	31630273	71	24310										
C10orf95	0	genome.wustl.edu	37	chr10	104211144	104211145	+	Frame_Shift_Del	DEL	TG	TG	-													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccagtgactccccactcactTgtctccttcagccttgggga							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	10	104211144	104211145	TG	-	DEL	C10orf95	ENST00000239125	human	ensembl	69_37n	-1	known	frame_shift_del	c.82_81	p.D27fs	0.978:0.961	NULL	NULL	-	no_errors	C10orf95	HGNC	ENSG00000120055	35	0	0	55	10	15.38	-	-	-	-	104211145	TG	-	104211144	7	5	261	1	0	1	0	1	0	0	0	0	1636	1826	63	0	699	0	C10orf95	10	104211144	Frame_Shift_Del	DEL	TG	TCGA-AC-A3W5-01A-11D-A228-09	306670	104211144	31323603	72	24311										
OR9Q1	0	genome.wustl.edu	37	chr11	57947558	57947558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cctgcttccatggtggtgatCttggtgtcctacctgtttat	10	10	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	11	57947558	57947558	C	G	SNP	OR9Q1	ENST00000335397	human	ensembl	69_37n	1	known	missense	c.642	p.I214M	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9Q1	HGNC	ENSG00000186509	42	0	0	25	7	21.88	-	-	-	G	57947558	C	G	57947558	3	3	261	1	0	0	0	0	1	0	0	0	11328	903	32	2	644	2	OR9Q1	11	57947558	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		57947558	77058958	73	24312										
DTX4	0	genome.wustl.edu	37	chr11	58949804	58949804	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcctccagcatgcccactggGacaaccatgggctctcctgc	10	17	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	11	58949804	58949804	G	T	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	1	known	silent	c.804	p.G268	0.002	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	42	0	0	32	5	13.51	-	-	-	T	58949804	G	T	58949804	2	4	261	1	0	0	0	0	0	0	0	1	4832	1161	41	2		2	DTX4	11	58949804	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	1002246	58949804	76056712	74	24313										
SLC22A8	0	genome.wustl.edu	37	chr11	62763237	62763237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tatccggaacaggtcacttgCggtgtacttggccttggcca	12	11	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	11	62763237	62763237	C	T	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	missense	c.940	p.A314T	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	29	0	0	24	7	22.58	-	-	-	T	62763237	C	T	62763237	3	4	261	1	0	0	0	0	1	0	0	0	14549	768	27	1	708	1	SLC22A8	11	62763237	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	3813433	62763237	72243279	75	24314										
NNMT	0	genome.wustl.edu	37	chr11	114168854	114168854	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gactggtccccagtggtgacCtatgtgtgtgatcttgaagg	14	8	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	11	114168854	114168854	C	A	SNP	NNMT	ENST00000299964	human	ensembl	69_37n	1	known	silent	c.336	p.T112	0.808	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	NNMT	HGNC	ENSG00000166741	93	0	0	48	10	17.24	-	-	-	A	114168854	C	A	114168854	2	1	261	1	0	0	0	0	0	0	0	1	10581	668	24	4		4	NNMT	11	114168854	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	51405617	114168854	20837662	76	24315										
EMG1	0	genome.wustl.edu	37	chr12	7080048	7080048	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttagaagccgcgctgttcttAtttaagagcgttagcgcaac	10	9	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	7080048	7080048	A	T	SNP	EMG1	ENST00000261406	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EMG1	HGNC	ENSG00000126749	79	0	0	82	12	12.77	-	-	-	T	7080048	A	T	7080048	1	4	261	0	1	0	0	0	0	0	0	0	5127	464	16	5		5	EMG1	12	7080048	RNA	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09		7080048	126771847	77	24316										
ITGB7	0	genome.wustl.edu	37	chr12	53587587	53587587	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cagtcacacagcgtgtgcaaCtccacaatcagctcctctga	7	15	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	53587587	53587587	C	G	SNP	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	missense	c.1407	p.E469D	0.861	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	30	0	0	25	6	19.35	-	-	-	G	53587587	C	G	53587587	3	3	261	1	0	0	0	0	1	0	0	0	7954	564	20	4	1013	4	ITGB7	12	53587587	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	46507539	53587587	80264308	78	24317										
ALX1	0	genome.wustl.edu	37	chr12	85674145	85674145	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agcacgttatggagacgctgGacaatgagtccttttacagc	11	9	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	85674145	85674145	G	C	SNP	ALX1	ENST00000316824	human	ensembl	69_37n	1	known	missense	c.106	p.D36H	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX1	HGNC	ENSG00000180318	49	0	0	46	7	13.21	-	-	-	C	85674145	G	C	85674145	3	2	261	1	0	0	0	0	1	0	0	0	556	1174	41	2	108	2	ALX1	12	85674145	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	32086558	85674145	48177750	79	24318										
SCARB1	0	genome.wustl.edu	37	chr12	125298822	125298822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gttgatgagattcacaagggGgtccttgtagccccacatga	12	9	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	125298822	125298822	G	A	SNP	SCARB1	ENST00000415380	human	ensembl	69_37n	-1	known	missense	c.556	p.P186S	1.000	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	68	0	0	54	6	10	-	-	-	A	125298822	G	A	125298822	3	1	261	1	0	0	0	0	1	0	0	0	13968	1232	43	4	1133	4	SCARB1	12	125298822	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	39624677	125298822	8553073	80	24319										
DHX37	0	genome.wustl.edu	37	chr12	125470788	125470788	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aacgagcgcgttgcttgcatCaactcccttcaacgtgtcct	8	14	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	125470788	125470788	C	G	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.130	p.D44H	0.943	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	38	0	0	32	7	17.95	-	-	-	G	125470788	C	G	125470788	3	3	261	1	0	0	0	0	1	0	0	0	4546	826	29	2	3447	2	DHX37	12	125470788	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	171966	125470788	8381107	81	24320										
P2RX2	0	genome.wustl.edu	37	chr12	133198228	133198228	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tccttcctgtgcgactggatCttgctaacattcatgaacaa	7	11	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	12	133198228	133198228	C	G	SNP	P2RX2	ENST00000343948	human	ensembl	69_37n	1	known	missense	c.1164	p.I388M	1.000	prints_P2X2_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	62	0	0	32	4	11.11	-	-	-	G	133198228	C	G	133198228	3	3	261	1	0	0	0	0	1	0	0	0	11413	903	32	2	1202	2	P2RX2	12	133198228	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	7727440	133198228	653667	82	24321										
PDS5B	0	genome.wustl.edu	37	chr13	33249987	33249987	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gtgttttattttagagcaatGataatgaggagcgcctacaa	10	5	0	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	33249987	33249987	G	T	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.853	p.D285Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	70	0	0	30	11	26.83	-	-	-	T	33249987	G	T	33249987	3	4	261	1	0	0	0	0	1	0	0	0	11765	1290	45	2	883	2	PDS5B	13	33249987	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		33249987	81919891	83	24322										
TPT1	0	genome.wustl.edu	37	chr13	45913711	45913711	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aaggttttactctttctggtCtctgttcttcaagtttccct	6	10	5	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	45913711	45913711	C	G	SNP	TPT1	ENST00000530705	human	ensembl	69_37n	-1	known	missense	c.320	p.R107T	0.999	pfam_Translational_control_tumour_p,superfamily_Mss4-like	pfam_Translational_control_tumour_p,superfamily_Mss4-like,prints_Translational_control_tumour_p	-	no_errors	TPT1	HGNC	ENSG00000133112	32	0	0	28	5	15.15	-	-	-	G	45913711	C	G	45913711	3	3	261	1	0	0	0	0	1	0	0	0	16525	913	32	2	210	2	TPT1	13	45913711	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	12663724	45913711	69256167	84	24323										
SLITRK6	0	genome.wustl.edu	37	chr13	86369675	86369675	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gggcagtaaggtcctggaagTtgagtggatggctttgtaat	16	4	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	86369675	86369675	T	G	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.969	p.Q323H	0.494	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	79	0	0	58	7	10.77	-	-	-	G	86369675	T	G	86369675	3	3	261	1	0	0	0	0	1	0	0	0	14836	1722	60	5	1560	5	SLITRK6	13	86369675	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	40455964	86369675	28800203	85	24324										
TGDS	0	genome.wustl.edu	37	chr13	95248285	95248285	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tctggggagccactgcttggCtagcggcgccattacctaca	12	13	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	95248285	95248285	C	A	SNP	TGDS	ENST00000498294	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TGDS	HGNC	ENSG00000088451	38	0	0	44	5	10.2	-	-	-	A	95248285	C	A	95248285	1	1	261	0	1	0	0	0	0	0	0	0	15909	812	28	4		4	TGDS	13	95248285	RNA	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	8878610	95248285	19921593	86	24325										
ABCC4	0	genome.wustl.edu	37	chr13	95727760	95727760	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgtatgcccggatggtccagAgcccctggagagaagatgat	14	9	0	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	95727760	95727760	A	G	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.2732	p.L911P	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	67	0	0	51	16	23.88	-	-	-	G	95727760	A	G	95727760	3	3	261	1	0	0	0	0	1	0	0	0	55	304	11	5	1285	5	ABCC4	13	95727760	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	479475	95727760	19442118	87	24326										
STK24	0	genome.wustl.edu	37	chr13	99114109	99114109	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tctcggattgtgaagatccaGtccccagaatcactgccccc	8	15	2	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	99114109	99114109	G	C	SNP	STK24	ENST00000376547	human	ensembl	69_37n	-1	known	missense	c.1008	p.D336E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572	77	0	0	26	35	57.38	-	-	-	C	99114109	G	C	99114109	3	2	261	1	0	0	0	0	1	0	0	0	15384	1020	36	4	339	4	STK24	13	99114109	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	3386349	99114109	16055769	88	24327										
DOCK9	0	genome.wustl.edu	37	chr13	99534235	99534235	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gtgggcaagaaggcgatcatCacgtggccttccatcgcatg	13	11	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	99534235	99534235	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	silent	c.2589	p.V863	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	53	0	0	56	9	13.85	-	-	-	T	99534235	C	T	99534235	2	4	261	1	0	0	0	0	0	0	0	1	4729	813	29	2		2	DOCK9	13	99534235	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	420126	99534235	15635643	89	24328										
TMCO3	0	genome.wustl.edu	37	chr13	114156090	114156090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	attgttaccataggaatgctGtccttgccttgtggctggct	11	9	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	13	114156090	114156090	G	A	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	silent	c.840	p.L280	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	86	0	0	98	19	16.24	-	-	-	A	114156090	G	A	114156090	2	1	261	1	0	0	0	0	0	0	0	1	16092	1364	48	4		4	TMCO3	13	114156090	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	14621855	114156090	1013788	90	24329										
NFATC4	0	genome.wustl.edu	37	chr14	24847040	24847040	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctctttccccagcttctgtcTgtctcactgtcttccctccc	4	19	5	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	24847040	24847040	T	A	SNP	NFATC4	ENST00000555821	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NFATC4	HGNC	ENSG00000100968	14	0	0	21	6	22.22	-	-	-	A	24847040	T	A	24847040	1	1	261	0	1	0	0	0	0	0	0	0	10437	1595	55	5		5	NFATC4	14	24847040	RNA	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09		24847040	82502500	91	24330										
CMA1	0	genome.wustl.edu	37	chr14	24975399	24975399	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gttcttccccagccagccacCcggcacattctcccaggtgg	9	18	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	24975399	24975399	C	A	SNP	CMA1	ENST00000250378	human	ensembl	69_37n	-1	known	silent	c.435	p.R145	0.685	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	CMA1	HGNC	ENSG00000092009	31	0	0	32	4	11.11	-	-	-	A	24975399	C	A	24975399	2	1	261	1	0	0	0	0	0	0	0	1	3604	610	22	4		4	CMA1	14	24975399	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	128359	24975399	82374141	92	24331										
EXD2	0	genome.wustl.edu	37	chr14	69708534	69708534	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gaaagaaccacaaactccatCtcccaatagaactttgaaat	4	11	1	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	69708534	69708534	C	G	SNP	EXD2	ENST00000492815	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXD2	HGNC	ENSG00000081177	55	0	0	35	4	10.26	-	-	-	G	69708534	C	G	69708534	1	3	261	0	1	0	0	0	0	0	0	0	5334	928	32	2		2	EXD2	14	69708534	RNA	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	44733135	69708534	37641006	93	24332										
HEATR4	0	genome.wustl.edu	37	chr14	73945253	73945253	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgtacagtatcaattaaaaaGacccaatgtgaccaggtcca	7	9	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	73945253	73945253	G	T	SNP	HEATR4	ENST00000565094	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	HEATR4	HGNC	ENSG00000187105	45	0	0	36	4	10	-	-	-	T	73945253	G	T	73945253	1	4	261	0	1	0	0	0	0	0	0	0	7081	957	33	2		2	HEATR4	14	73945253	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	4236719	73945253	33404287	94	24333										
YLPM1	0	genome.wustl.edu	37	chr14	75245153	75245153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aattgtttctgttgtaggaaCagcagcagtattggtatcga	11	5	1	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	75245153	75245153	C	G	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.877	p.Q293E	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	38	0	0	21	11	34.38	-	-	-	G	75245153	C	G	75245153	3	3	261	1	0	0	0	0	1	0	0	0	17583	479	17	4	883	4	YLPM1	14	75245153	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	1299900	75245153	32104387	95	24334										
RPS6KL1	0	genome.wustl.edu	37	chr14	75386605	75386605	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aggtggcagttgaagatctcCtctgcccgccgcaggtattt	12	11	2	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	75386605	75386605	C	G	SNP	RPS6KL1	ENST00000358328	human	ensembl	69_37n	-1	known	missense	c.333	p.E111D	0.997	pfam_MIT,smart_MIT	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208	29	0	0	9	8	47.06	-	-	-	G	75386605	C	G	75386605	3	3	261	1	0	0	0	0	1	0	0	0	13745	680	24	4	1328	4	RPS6KL1	14	75386605	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	141452	75386605	31962935	96	24335										
ZDHHC22	0	genome.wustl.edu	37	chr14	77605777	77605777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggtcgtgcctcagggtgactCtggcgcacactcggcagaag	15	12	2	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	14	77605777	77605777	C	G	SNP	ZDHHC22	ENST00000319374	human	ensembl	69_37n	-1	known	missense	c.305	p.R102T	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_SSD,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC22	HGNC	ENSG00000177108	41	0	0	28	7	20	-	-	-	G	77605777	C	G	77605777	3	3	261	1	0	0	0	0	1	0	0	0	17709	913	32	2	494	2	ZDHHC22	14	77605777	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	2219172	77605777	29743763	97	24336										
ATP10A	0	genome.wustl.edu	37	chr15	25959223	25959223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cagcctgagaagcatgccgtCgctggacggggtggacggga	18	10	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	15	25959223	25959223	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1942	p.D648N	0.839	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	127	0	0	127	55	30.22	-	-	-	T	25959223	C	T	25959223	3	4	261	1	0	0	0	0	1	0	0	0	1120	884	31	1	2605	1	ATP10A	15	25959223	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		25959223	76572169	98	24337										
ADAM10	0	genome.wustl.edu	37	chr15	58903290	58903290	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctaagccatatttctcacagAtagaacctgcacattgctag	6	11	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	15	58903290	58903290	A	C	SNP	ADAM10	ENST00000260408	human	ensembl	69_37n	-1	known	missense	c.1712	p.I571S	1.000	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM10	HGNC	ENSG00000137845	35	0	0	29	4	12.12	-	-	-	C	58903290	A	C	58903290	3	2	261	1	0	0	0	0	1	0	0	0	234	333	12	5	550	5	ADAM10	15	58903290	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	32944067	58903290	43628102	99	24338										
ADAMTS7	0	genome.wustl.edu	37	chr15	79058017	79058017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tttcccgcttgccagccggcGttcctgacaaccaacgggtc	10	16	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	15	79058017	79058017	G	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	missense	c.4236	p.N1412K	0.879	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	231	0	0	245	39	13.64	-	-	-	T	79058017	G	T	79058017	3	4	261	1	0	0	0	0	1	0	0	0	271	1136	40	3	848	3	ADAMTS7	15	79058017	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	20154727	79058017	23473375	100	24339										
MSLNL	0	genome.wustl.edu	37	chr16	824291	824291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cgagccttcccacctggcacGaagccaccacgctgcggaag	11	17	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	16	824291	824291	G	A	SNP	MSLNL	ENST00000293892	human	ensembl	69_37n	-1	known	missense	c.1865	p.S622L	0.000	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006	19	0	0	15	9	37.5	-	-	-	A	824291	G	A	824291	3	1	261	1	0	0	0	0	1	0	0	0	9954	1059	37	1	1328	1	MSLNL	16	824291	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		824291	89530462	101	24340										
ITGAX	0	genome.wustl.edu	37	chr16	31373987	31373987	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cagagcctggtcctgggggcCccccgctaccagcacaccgg	13	18	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	16	31373987	31373987	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.1272	p.A424	0.992	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	41	0	0	51	6	10.53	-	-	-	T	31373987	C	T	31373987	2	4	261	1	0	0	0	0	0	0	0	1	7943	610	22	4		4	ITGAX	16	31373987	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	30549696	31373987	58980766	102	24341										
CCDC135	0	genome.wustl.edu	37	chr16	57755632	57755632	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ccccactcgtgggtggagcaGattgagatctccccggaagg	14	12	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	16	57755632	57755632	G	C	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1260	p.Q420H	0.988	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	76	0	0	50	9	15.25	-	-	-	C	57755632	G	C	57755632	3	2	261	1	0	0	0	0	1	0	0	0	2794	933	33	2	1290	2	CCDC135	16	57755632	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	26381645	57755632	32599121	103	24342										
PSMB10	0	genome.wustl.edu	37	chr16	67970636	67970636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agaagccccctcggggctccAgggctggcttcagcatcttg	13	14	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	16	67970636	67970636	A	G	SNP	PSMB10	ENST00000358514	human	ensembl	69_37n	-1	known	missense	c.17	p.L6P	0.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_bsu_C,prints_Pept_T1A_subB	-	no_errors	PSMB10	HGNC	ENSG00000205220	26	0	0	14	3	17.65	-	-	-	G	67970636	A	G	67970636	3	3	261	1	0	0	0	0	1	0	0	0	12755	188	7	5	836	5	PSMB10	16	67970636	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	10215004	67970636	22384117	104	24343										
MYH2	0	genome.wustl.edu	37	chr17	10440751	10440751	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gaccaccttgggcttctggaAgttggcagacttgcccaggt	13	11	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	17	10440751	10440751	A	G	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.1696	p.F566L	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	67	0	0	47	10	17.54	-	-	-	G	10440751	A	G	10440751	3	3	261	1	0	0	0	0	1	0	0	0	10107	72	3	5	4229	5	MYH2	17	10440751	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09		10440751	70754459	105	24344										
KRT222	0	genome.wustl.edu	37	chr17	38818225	38818227	+	In_Frame_Del	DEL	CTT	CTT	-													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgccactggcgtcgggcctcCttgagttctgcttgagctgc							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	17	38818225	38818227	CTT	-	DEL	KRT222	ENST00000394052	human	ensembl	69_37n	-1	known	in_frame_del	c.168_166	p.K56in_frame_del	0.965:0.999:1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424	52	0	0	81	10	10.99	-	-	-	-	38818227	CTT	-	38818225	7	5	261	1	0	1	0	1	0	0	0	0	8512	680	24	0	739	0	KRT222	17	38818225	In_Frame_Del	DEL	CTT	TCGA-AC-A3W5-01A-11D-A228-09	28377474	38818225	42376985	106	24345										
SMARCD2	0	genome.wustl.edu	37	chr17	61912805	61912805	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tttccttccactcggagttcCcaggaagccaccttgtcccc	7	17	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	17	61912805	61912805	C	G	SNP	SMARCD2	ENST00000448276	human	ensembl	69_37n	-1	known	missense	c.690	p.W230C	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD2	HGNC	ENSG00000108604	44	0	0	23	3	11.54	-	-	-	G	61912805	C	G	61912805	3	3	261	1	0	0	0	0	1	0	0	0	14867	624	22	4	941	4	SMARCD2	17	61912805	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	23094580	61912805	19282405	107	24346										
COG1	0	genome.wustl.edu	37	chr17	71203396	71203396	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	acatcgaaacaaaagctcagGttggtgccaagagcaagagg	12	8	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	17	71203396	71203396	G	A	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	splice_site	c.2805+1	e13+1	1.000	-	-	-	no_errors	COG1	HGNC	ENSG00000166685	37	0	0	21	8	27.59	-	-	-	A	71203396	G	A	71203396	5	1	261	1	0	0	0	0	0	0	1	0	3687	1275	44	4	2856	4	COG1	17	71203396	Splice_Site	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	9290591	71203396	9991814	108	24347										
DNAH17	0	genome.wustl.edu	37	chr17	76421448	76421448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttccatgaagagtccgtacaCgtaggagccctctcgcggag	12	12	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	17	76421448	76421448	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.13189	p.V4397M	0.987	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	57	0	0	41	7	14.58	-	-	-	T	76421448	C	T	76421448	3	4	261	1	0	0	0	0	1	0	0	0	4637	536	19	1	276	1	DNAH17	17	76421448	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	5218052	76421448	4773762	109	24348										
TAF4B	0	genome.wustl.edu	37	chr18	23865876	23865878	+	In_Frame_Del	DEL	CCT	CCT	-													0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttgccttacgacaacttctgCctaactcccagagcttcatc							TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	18	23865876	23865878	CCT	-	DEL	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	in_frame_del	c.1003_1005	p.P335in_frame_del	1.000:1.000:0.932	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	64	0	0	39	5	11.36	-	-	-	-	23865878	CCT	-	23865876	7	5	261	1	0	1	0	1	0	0	0	0	15619	739	26	0	1029	0	TAF4B	18	23865876	In_Frame_Del	DEL	CCT	TCGA-AC-A3W5-01A-11D-A228-09		23865876	54211372	110	24349										
MEP1B	0	genome.wustl.edu	37	chr18	29797730	29797730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ctctcaacatgcaggtgccaGtcaggggaagactggtggta	14	9	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	18	29797730	29797730	G	A	SNP	MEP1B	ENST00000269202	human	ensembl	69_37n	1	known	silent	c.1893	p.Q631	0.000	pirsf_Pept_M12A_Meprin,pfscan_EG-like_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434	53	0	0	20	14	41.18	-	-	-	A	29797730	G	A	29797730	2	1	261	1	0	0	0	0	0	0	0	1	9547	1020	36	4		4	MEP1B	18	29797730	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	5931854	29797730	48279518	111	24350										
PCP2	0	genome.wustl.edu	37	chr19	7696678	7696678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggggactgagggtcccagctCgtttctgtgctccgtcctgt	14	12	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	7696678	7696678	C	A	SNP	PCP2	ENST00000311069	human	ensembl	69_37n	-1	known	missense	c.308	p.R103L	1.000	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	PCP2	HGNC	ENSG00000174788	49	0	0	50	15	23.08	-	-	-	A	7696678	C	A	7696678	3	1	261	1	0	0	0	0	1	0	0	0	11670	884	31	3	106	3	PCP2	19	7696678	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		7696678	51432305	112	24351										
ANGPTL4	0	genome.wustl.edu	37	chr19	8436129	8436129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcctctcccactccaggcgaGttctggctgggtctggagaa	13	13	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	8436129	8436129	G	C	SNP	ANGPTL4	ENST00000301455	human	ensembl	69_37n	1	known	missense	c.762	p.E254D	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL4	HGNC	ENSG00000167772	31	0	0	34	8	19.05	-	-	-	C	8436129	G	C	8436129	3	2	261	1	0	0	0	0	1	0	0	0	616	1020	36	4	784	4	ANGPTL4	19	8436129	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	739451	8436129	50692854	113	24352										
TSPAN16	0	genome.wustl.edu	37	chr19	11417278	11417278	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gtatttcttctcctctctatAgctaaagtgctgtggggtga	10	8	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	11417278	11417278	A	T	SNP	TSPAN16	ENST00000316737	human	ensembl	69_37n	1	known	splice_site	c.451-2	e5-2	0.266	-	-	-	no_errors	TSPAN16	HGNC	ENSG00000130167	113	0	0	55	36	39.56	-	-	-	T	11417278	A	T	11417278	5	4	261	1	0	0	0	0	0	0	1	0	16736	434	15	5	467	5	TSPAN16	19	11417278	Splice_Site	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	2981149	11417278	47711705	114	24353										
SIPA1L3	0	genome.wustl.edu	37	chr19	38689102	38689102	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cggcgcctggaccctgggctGatgcccctgcctgacacagc	13	17	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	38689102	38689102	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	silent	c.4914	p.L1638	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	31	0	0	25	12	32.43	-	-	-	A	38689102	G	A	38689102	2	1	261	1	0	0	0	0	0	0	0	1	14420	1277	45	2		2	SIPA1L3	19	38689102	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	27271824	38689102	20439881	115	24354										
SPTBN4	0	genome.wustl.edu	37	chr19	40978681	40978681	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcgctctttgagtgctcccgGatcaaggccttggcaggtac	12	12	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	40978681	40978681	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	silent	c.153	p.R51	0.991	pirsf_Spectrin_bsu,superfamily_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	30	0	0	41	6	12.77	-	-	-	A	40978681	G	A	40978681	2	1	261	1	0	0	0	0	0	0	0	1	15212	1161	41	2		2	SPTBN4	19	40978681	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2289579	40978681	18150302	116	24355										
TMEM91	0	genome.wustl.edu	37	chr19	41889658	41889658	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aagggggacatccagggggcAggggccgcctcccgccgtgc	18	14	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	41889658	41889658	A	G	SNP	TMEM91	ENST00000392002	human	ensembl	69_37n	1	known	silent	c.399	p.A133	0.994	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	TMEM91	HGNC	ENSG00000142046	36	0	0	26	15	36.59	-	-	-	G	41889658	A	G	41889658	2	3	261	1	0	0	0	0	0	0	0	1	16315	175	7	5		5	TMEM91	19	41889658	Silent	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	910977	41889658	17239325	117	24356										
PSG8	0	genome.wustl.edu	37	chr19	43258545	43258545	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agtggctgagttacgaacagAgcaagcatagagcccgctat	12	9	0	3			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	43258545	43258545	A	G	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.1183	p.S395P	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	165	0	0	128	36	21.95	-	-	-	G	43258545	A	G	43258545	3	3	261	1	0	0	0	0	1	0	0	0	12741	304	11	5	122	5	PSG8	19	43258545	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	1368887	43258545	15870438	118	24357										
FOSB	0	genome.wustl.edu	37	chr19	45976235	45976235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcggcagtgaccagccttccGatcccctgaactcgccctcc	9	19	0	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	45976235	45976235	G	A	SNP	FOSB	ENST00000353609	human	ensembl	69_37n	1	known	missense	c.982	p.D328N	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740	53	0	0	64	14	17.95	-	-	-	A	45976235	G	A	45976235	3	1	261	1	0	0	0	0	1	0	0	0	6032	1058	37	1	996	1	FOSB	19	45976235	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2717690	45976235	13152748	119	24358										
TPRX1	0	genome.wustl.edu	37	chr19	48305574	48305574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cgggcctgggttcgggcctgAgattgggcctgggattgggc	20	9	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	48305574	48305574	A	G	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.985	p.S329P	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	85	0	0	125	23	15.44	-	-	-	G	48305574	A	G	48305574	3	3	261	1	0	0	0	0	1	0	0	0	16518	304	11	5	545	5	TPRX1	19	48305574	Missense_Mutation	SNP	A	TCGA-AC-A3W5-01A-11D-A228-09	2329339	48305574	10823409	120	24359										
NUP62	0	genome.wustl.edu	37	chr19	50412334	50412334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cagtgggggcgcccgctgtgGtcacaggggtacagagggag	20	9	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	50412334	50412334	G	A	SNP	NUP62	ENST00000352066	human	ensembl	69_37n	-1	known	missense	c.731	p.T244I	0.654	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024	128	0	0	156	30	16.13	-	-	-	A	50412334	G	A	50412334	3	1	261	1	0	0	0	0	1	0	0	0	10841	1261	44	4	841	4	NUP62	19	50412334	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2106760	50412334	8716649	121	24360										
KLK6	0	genome.wustl.edu	37	chr19	51470541	51470541	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gggtgagatgtcttgtcgcaGggtccgccatgcaccaactt	13	11	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	51470541	51470541	G	A	SNP	KLK6	ENST00000310157	human	ensembl	69_37n	-1	known	silent	c.81	p.P27	0.149	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	KLK6	HGNC	ENSG00000167755	45	0	0	36	16	30.77	-	-	-	A	51470541	G	A	51470541	2	1	261	1	0	0	0	0	0	0	0	1	8461	987	35	4		4	KLK6	19	51470541	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	1058207	51470541	7658442	122	24361										
ZNF468	0	genome.wustl.edu	37	chr19	53344462	53344462	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ttgatagtcgattaaaaactTtgccacattcattacatgtg	6	7	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	53344462	53344462	T	C	SNP	ZNF468	ENST00000243639	human	ensembl	69_37n	-1	known	missense	c.1085	p.K362R	0.936	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604	51	0	0	37	5	11.9	-	-	-	C	53344462	T	C	53344462	3	2	261	1	0	0	0	0	1	0	0	0	18024	1841	64	5	487	5	ZNF468	19	53344462	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	1873921	53344462	5784521	123	24362										
LILRA1	0	genome.wustl.edu	37	chr19	55107704	55107704	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tgcatccgggccccacggtgGcctcaggagagaacgtgacc	14	14	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	55107704	55107704	G	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.1009	p.A337S	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	69	0	0	69	20	22.47	-	-	-	T	55107704	G	T	55107704	3	4	261	1	0	0	0	0	1	0	0	0	8839	1203	42	4	1031	4	LILRA1	19	55107704	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	1763242	55107704	4021279	124	24363										
FCAR	0	genome.wustl.edu	37	chr19	55396826	55396826	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tttggaatgagactgatcctGagttcgtcattgaccacatg	10	8	1	4			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	19	55396826	55396826	G	A	SNP	FCAR	ENST00000355524	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	47	0	0	31	20	39.22	-	-	-	A	55396826	G	A	55396826	3	1	261	1	0	0	0	0	1	0	0	0	5819	1291	45	2	260	2	FCAR	19	55396826	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	289122	55396826	3732157	125	24364										
RASSF2	0	genome.wustl.edu	37	chr20	4764893	4764893	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggcaatggcggttcctggggTgcccagatcccctcgttctc	13	14	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	4764893	4764893	T	G	SNP	RASSF2	ENST00000474232	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RASSF2	HGNC	ENSG00000101265	52	0	0	22	15	40.54	-	-	-	G	4764893	T	G	4764893	1	3	261	0	1	0	0	0	0	0	0	0	13169	1711	59	5		5	RASSF2	20	4764893	RNA	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09		4764893	58260627	126	24365										
PCSK2	0	genome.wustl.edu	37	chr20	17446041	17446041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	aacggaaccagcttcacgacGaggtccatcagtggcggcgc	13	13	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	17446041	17446041	G	A	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	1	known	missense	c.1273	p.E425K	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	40	0	0	22	9	29.03	-	-	-	A	17446041	G	A	17446041	3	1	261	1	0	0	0	0	1	0	0	0	11674	1059	37	1	1315	1	PCSK2	20	17446041	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	12681148	17446041	45579479	127	24366										
SNX21	0	genome.wustl.edu	37	chr20	44470669	44470669	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tttttttttttttcctgaaaCagagtctcactaagttgcca	5	8	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	44470669	44470669	C	T	SNP	SNX21	ENST00000344780	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104	37	0	0	21	10	32.26	-	-	-	T	44470669	C	T	44470669	1	4	261	0	1	0	0	0	0	0	0	0	14982	493	17	4		4	SNX21	20	44470669	RNA	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	27024628	44470669	18554851	128	24367										
NCOA5	0	genome.wustl.edu	37	chr20	44693855	44693855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cgcaccttccgccccacagaCtcagcatagtctctgtaaaa	6	16	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	44693855	44693855	C	G	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.642	p.E214D	0.997	superfamily_Anticodon-bd	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	47	0	0	33	10	23.26	-	-	-	G	44693855	C	G	44693855	3	3	261	1	0	0	0	0	1	0	0	0	10304	564	20	4	1109	4	NCOA5	20	44693855	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	223186	44693855	18331665	129	24368										
EEF1A2	0	genome.wustl.edu	37	chr20	62121944	62121944	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcacattgaagccgacgttgTcgccgggcagagcttcgctc	12	13	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	62121944	62121944	T	A	SNP	EEF1A2	ENST00000217182	human	ensembl	69_37n	-1	known	missense	c.917	p.D306V	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210	76	0	0	60	31	34.07	-	-	-	A	62121944	T	A	62121944	3	1	261	1	0	0	0	0	1	0	0	0	4959	1667	58	5	486	5	EEF1A2	20	62121944	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	17428089	62121944	903576	130	24369										
GMEB2	0	genome.wustl.edu	37	chr20	62226998	62226998	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcgtgaggggaatgtactcgGccgacgtggggctgctcagg	19	9	1	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	20	62226998	62226998	G	C	SNP	GMEB2	ENST00000266068	human	ensembl	69_37n	-1	known	missense	c.584	p.A195G	0.000	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Sig_transdc_His_kin_Hpt_dom,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB2	HGNC	ENSG00000101216	24	0	0	41	20	32.79	-	-	-	C	62226998	G	C	62226998	3	2	261	1	0	0	0	0	1	0	0	0	6540	1203	42	4	1028	4	GMEB2	20	62226998	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	105054	62226998	798522	131	24370										
UMODL1	0	genome.wustl.edu	37	chr21	43557583	43557583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gcagaagcaggcctgggtgcCggttatgtggtccttattgt	15	8	0	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	21	43557583	43557583	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	silent	c.4194	p.A1398	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	78	0	0	50	9	15.25	-	-	-	T	43557583	C	T	43557583	2	4	261	1	0	0	0	0	0	0	0	1	17077	639	23	1		1	UMODL1	21	43557583	Silent	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09		43557583	4572312	132	24371										
UBE2G2	0	genome.wustl.edu	37	chr21	46191243	46191243	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tcactaagtgtgccgggggaGaatgctgagctgcttggcgg	17	8	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	21	46191243	46191243	G	C	SNP	UBE2G2	ENST00000477954	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBE2G2	HGNC	ENSG00000184787	30	0	0	30	7	18.92	-	-	-	C	46191243	G	C	46191243	1	2	261	0	1	0	0	0	0	0	0	0	16954	957	33	2		2	UBE2G2	21	46191243	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	2633660	46191243	1938652	133	24372										
COL6A1	0	genome.wustl.edu	37	chr21	47423943	47423943	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	gctagcccaccctgcacgccGgcaccaaaccctgtcctccc	7	22	0	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	21	47423943	47423943	G	A	SNP	COL6A1	ENST00000486023	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL6A1	HGNC	ENSG00000142156	34	0	0	38	5	11.63	-	-	-	A	47423943	G	A	47423943	1	1	261	0	1	0	0	0	0	0	0	0	3729	1131	39	1		1	COL6A1	21	47423943	RNA	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	1232700	47423943	705952	134	24373										
LARGE	0	genome.wustl.edu	37	chr22	33670434	33670434	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	tagctgttgttctcggctgtGagatatttcagggcagcaaa	12	7	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	22	33670434	33670434	G	A	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	silent	c.2250	p.L750	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	78	0	0	87	17	16.35	-	-	-	A	33670434	G	A	33670434	2	1	261	1	0	0	0	0	0	0	0	1	8681	1277	45	2		2	LARGE	22	33670434	Silent	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		33670434	17634132	135	24374										
SCUBE1	0	genome.wustl.edu	37	chr22	43634956	43634956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cctccgttattgactgcgcaCgtctctggggagggaaagag	14	10	1	2			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	22	43634956	43634956	C	T	SNP	SCUBE1	ENST00000449304	human	ensembl	69_37n	-1	known	missense	c.292	p.V98M	0.601	smart_EGF-like	pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCUBE1	HGNC	ENSG00000159307	50	0	0	56	24	30	-	-	-	T	43634956	C	T	43634956	3	4	261	1	0	0	0	0	1	0	0	0	14032	523	19	1	2298	1	SCUBE1	22	43634956	Missense_Mutation	SNP	C	TCGA-AC-A3W5-01A-11D-A228-09	9964522	43634956	7669610	136	24375										
USP11	0	genome.wustl.edu	37	chrX	47098833	47098833	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	cagctgcttggcattacctgGtcagctggtatggtctagag	13	9	2	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	X	47098833	47098833	G	T	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	missense	c.499	p.V167F	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	73	0	0	45	6	11.76	-	-	-	T	47098833	G	T	47098833	3	4	261	1	0	0	0	0	1	0	0	0	17139	1261	44	4	509	4	USP11	23	47098833	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09		47098833	108171727	137	24376										
RPA4	0	genome.wustl.edu	37	chrX	96139695	96139695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	agtatatgtcaaagtgtttgGtatcctcaaatgtcccacgg	9	8	2	0			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	X	96139695	96139695	G	T	SNP	RPA4	ENST00000373040	human	ensembl	69_37n	1	known	missense	c.386	p.G129V	0.003	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	35	0	0	22	5	18.52	-	-	-	T	96139695	G	T	96139695	3	4	261	1	0	0	0	0	1	0	0	0	13625	1261	44	4	388	4	RPA4	23	96139695	Missense_Mutation	SNP	G	TCGA-AC-A3W5-01A-11D-A228-09	49040862	96139695	59130865	138	24377										
L1CAM	0	genome.wustl.edu	37	chrX	153133854	153133854	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.201438848920863	28	3.23588847318574e-06	2.79616832021895	4.40866454689984	1.57783783783784	0.0208563524937958	0.233153210425938	18	ggaggcctggcacgtgaaggTcaccctggaacctttcttct	12	12	3	1			TCGA-AC-A3W5-01A-11D-A228-09	TCGA-AC-A3W5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21da489e-0eea-4cb5-9b50-98ce50c9a617	b7bae67a-42a2-4fe7-b469-ef0725971eed	X	153133854	153133854	T	G	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.1612	p.T538P	0.877	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	100	0	0	70	12	14.63	-	-	-	G	153133854	T	G	153133854	3	3	261	1	0	0	0	0	1	0	0	0	8642	1667	58	5	2231	5	L1CAM	23	153133854	Missense_Mutation	SNP	T	TCGA-AC-A3W5-01A-11D-A228-09	56994159	153133854	2136706	139	24378										
MORN1	0	genome.wustl.edu	37	chr1	2303973	2303973	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gaacgttcaccgagaagggaGacccttgggccacttccatc	11	13	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	2303973	2303973	G	A	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	missense	c.692	p.S231F	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	51	0	0	30	9	23.08	-	-	-	A	2303973	G	A	2303973	3	1	262	1	0	0	0	0	1	0	0	0	9780	942	33	2	829	2	MORN1	1	2303973	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		2303973	246946648	1	24379										
CNR2	0	genome.wustl.edu	37	chr1	24201912	24201912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gaacaggtatgagggcttccGgcggagttggtgggaggaca	19	6	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	24201912	24201912	G	A	SNP	CNR2	ENST00000374472	human	ensembl	69_37n	-1	known	missense	c.196	p.R66W	0.994	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Cnbnoid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Canbinoid_rcpt_2,prints_Cnbnoid_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CNR2	HGNC	ENSG00000188822	30	0	0	26	7	21.21	-	-	-	A	24201912	G	A	24201912	3	1	262	1	0	0	0	0	1	0	0	0	3662	1115	39	1	890	1	CNR2	1	24201912	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	21897939	24201912	225048709	2	24380										
EPB41	0	genome.wustl.edu	37	chr1	29443675	29443675	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	acagacactgacagggtccaTggaattcttcgggaaatcct	10	10	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	29443675	29443675	T	C	SNP	EPB41	ENST00000460378	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	EPB41	HGNC	ENSG00000159023	9	0	0	12	4	25	-	-	-	C	29443675	T	C	29443675	1	2	262	0	1	0	0	0	0	0	0	0	5188	1479	51	5		5	EPB41	1	29443675	RNA	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	5241763	29443675	219806946	3	24381										
COL16A1	0	genome.wustl.edu	37	chr1	32137254	32137254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cggggagcccctcatgccagGcggaccctgcaaaggaagcc	14	15	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	32137254	32137254	G	T	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.3112	p.P1038T	0.985	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	39	0	0	24	4	14.29	-	-	-	T	32137254	G	T	32137254	3	4	262	1	0	0	0	0	1	0	0	0	3703	1203	42	4	1798	4	COL16A1	1	32137254	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2693579	32137254	217113367	4	24382										
ZC3H12A	0	genome.wustl.edu	37	chr1	37948212	37948212	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctcacctgtctgcctgtgccCtgttttcctcttggggacct	9	15	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	37948212	37948212	C	G	SNP	ZC3H12A	ENST00000492829	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	88	0	0	67	10	12.82	-	-	-	G	37948212	C	G	37948212	1	3	262	0	1	0	0	0	0	0	0	0	17657	696	24	4		4	ZC3H12A	1	37948212	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	5810958	37948212	211302409	5	24383										
MACF1	0	genome.wustl.edu	37	chr1	39951984	39951984	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tccattgtttaatgttttgtGatttttagctaaagagaggg	10	3	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	39951984	39951984	G	C	SNP	MACF1	ENST00000497807	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603	56	0	0	42	7	14.29	-	-	-	C	39951984	G	C	39951984	1	2	262	0	1	0	0	0	0	0	0	0	9211	1305	45	2		2	MACF1	1	39951984	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2003772	39951984	209298637	6	24384										
FOXJ3	0	genome.wustl.edu	37	chr1	42645444	42645444	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggaggcagggaacgccgcatCtggaaggcttgggaaggcat	18	8	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	42645444	42645444	C	G	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.1806	p.Q602H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	60	0	0	36	8	18.18	-	-	-	G	42645444	C	G	42645444	3	3	262	1	0	0	0	0	1	0	0	0	6061	912	32	2	66	2	FOXJ3	1	42645444	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	2693460	42645444	206605177	7	24385										
NFIA	0	genome.wustl.edu	37	chr1	61921583	61921583	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtttgttttggttcagcagtCagcagttaagtatataacat	9	5	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	61921583	61921583	C	T	SNP	NFIA	ENST00000357977	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NFIA	HGNC	ENSG00000162599	66	0	0	54	7	11.48	-	-	-	T	61921583	C	T	61921583	1	4	262	0	1	0	0	0	0	0	0	0	10442	841	29	2		2	NFIA	1	61921583	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	19276139	61921583	187329038	8	24386										
USP1	0	genome.wustl.edu	37	chr1	62905665	62905665	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctttggatttcacagattctCaagaaaatgaagaaaaagct	7	6	2	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	62905665	62905665	C	G	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	missense	c.127	p.Q43E	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	42	0	0	37	7	15.56	-	-	-	G	62905665	C	G	62905665	3	3	262	1	0	0	0	0	1	0	0	0	17137	827	29	2	129	2	USP1	1	62905665	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	984082	62905665	186344956	9	24387										
LEPR	0	genome.wustl.edu	37	chr1	66062146	66062146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttaagtgaagcctgatccacCattaggtttgcatatggaaa	9	7	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	66062146	66062146	C	T	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	missense	c.719	p.P240L	0.994	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	41	0	0	34	4	10.53	-	-	-	T	66062146	C	T	66062146	3	4	262	1	0	0	0	0	1	0	0	0	8782	594	21	4	737	4	LEPR	1	66062146	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	3156481	66062146	183188475	10	24388										
COL24A1	0	genome.wustl.edu	37	chr1	86620323	86620323	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcagggccttttctgggagcGtctggaagggaagtgtaaac	16	7	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	86620323	86620323	G	A	SNP	COL24A1	ENST00000485434	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	COL24A1	HGNC	ENSG00000171502	49	0	0	28	5	15.15	-	-	-	A	86620323	G	A	86620323	1	1	262	0	1	0	0	0	0	0	0	0	3713	1160	40	1		1	COL24A1	1	86620323	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	20558177	86620323	162630298	11	24389										
ARHGAP29	0	genome.wustl.edu	37	chr1	94643605	94643605	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcgtgcttgatttgaatactCtgcaagggaggagatggtga	15	5	1	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	94643605	94643605	C	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.2599	p.E867Q	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	56	0	0	40	8	16.67	-	-	-	G	94643605	C	G	94643605	3	3	262	1	0	0	0	0	1	0	0	0	880	922	32	2	1198	2	ARHGAP29	1	94643605	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	8023282	94643605	154607016	12	24390										
MOV10	0	genome.wustl.edu	37	chr1	113242560	113242560	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gccaaggccctgctcatcatCgtggggaacccccttctcct	9	17	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	113242560	113242560	C	T	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	silent	c.2754	p.I918	0.020	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	20	0	0	15	5	25	-	-	-	T	113242560	C	T	113242560	2	4	262	1	0	0	0	0	0	0	0	1	9790	874	31	1		1	MOV10	1	113242560	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	18598955	113242560	136008061	13	24391										
RNF115	0	genome.wustl.edu	37	chr1	145688197	145688197	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gatttagcaatgacagtcagCtacatgaccgatggactttc	9	9	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	145688197	145688197	C	G	SNP	RNF115	ENST00000369291	human	ensembl	69_37n	1	known	missense	c.892	p.L298V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF115	HGNC	ENSG00000121848	45	0	0	33	5	13.16	-	-	-	G	145688197	C	G	145688197	3	3	262	1	0	0	0	0	1	0	0	0	13516	796	28	4	926	4	RNF115	1	145688197	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	32445637	145688197	103562424	14	24392										
NBPF15	0	genome.wustl.edu	37	chr1	148574903	148574903	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtccattcatgacaaagtttGaccagtctttgccaaccagg	8	11	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	148574903	148574903	G	A	SNP	NBPF15	ENST00000464336	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.641	-	-	-	no_errors	NBPF15	HGNC	ENSG00000243452	37	0	0	17	4	19.05	-	-	-	A	148574903	G	A	148574903	1	1	262	0	1	0	0	0	0	0	0	0	10267	1305	45	2		2	NBPF15	1	148574903	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2886706	148574903	100675718	15	24393										
RPRD2	0	genome.wustl.edu	37	chr1	150444067	150444067	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agttatagccacagagcccaAgaatttggggtaaagtctgc	11	8	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	150444067	150444067	A	G	SNP	RPRD2	ENST00000369068	human	ensembl	69_37n	1	known	silent	c.2643	p.Q881	0.990	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	41	0	0	31	4	11.43	-	-	-	G	150444067	A	G	150444067	2	3	262	1	0	0	0	0	0	0	0	1	13703	69	3	5		5	RPRD2	1	150444067	Silent	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	1869164	150444067	98806554	16	24394										
FLAD1	0	genome.wustl.edu	37	chr1	154965445	154965445	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgaagtgcctgagcccaggaGgacaccccacataccgtcca	10	15	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	154965445	154965445	G	C	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	missense	c.1696	p.G566R	1.000	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	50	0	0	30	9	23.08	-	-	-	C	154965445	G	C	154965445	3	2	262	1	0	0	0	0	1	0	0	0	5966	1001	35	4	1866	4	FLAD1	1	154965445	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	4521378	154965445	94285176	17	24395										
FCGR2C	0	genome.wustl.edu	37	chr1	161565479	161565479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcaaaattaaaatggagactGggcctgaaaactcctgagca	10	8	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	161565479	161565479	G	A	SNP	FCGR2C	ENST00000543859	human	ensembl	69_37n	1	known	silent	c.135	p.L45	0.301	NULL	NULL	-	no_start_codon	FCGR2C	HGNC	ENSG00000244682	57	0	0	42	10	18.52	-	-	-	A	161565479	G	A	161565479	2	1	262	1	0	0	0	0	0	0	0	1	5829	1363	47	4		4	FCGR2C	1	161565479	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	6600034	161565479	87685142	18	24396										
HSD17B7	0	genome.wustl.edu	37	chr1	162760551	162760551	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggacttccgaaagcagcggCggtgtttgcttcactgcttg	13	10	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	162760551	162760551	C	T	SNP	HSD17B7	ENST00000463037	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B7	HGNC	ENSG00000132196	51	0	0	27	4	12.9	-	-	-	T	162760551	C	T	162760551	1	4	262	0	1	0	0	0	0	0	0	0	7439	783	27	1		1	HSD17B7	1	162760551	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1195072	162760551	86490070	19	24397										
MAEL	0	genome.wustl.edu	37	chr1	166963267	166963267	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agatattttgtattataggtGaaattccacgaggatttcga	9	4	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	166963267	166963267	G	T	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	nonsense	c.484	p.E162*	1.000	superfamily_CH-domain	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	47	0	0	43	5	10.42	-	-	-	T	166963267	G	T	166963267	4	4	262	1	0	0	0	0	0	1	0	0	9221	1291	45	2	502	2	MAEL	1	166963267	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	4202716	166963267	82287354	20	24398										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185267114	185267114	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttattcacaagtgtacctctActaaccataattacatcact	2	11	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	185267114	185267114	A	G	SNP	IVNS1ABP	ENST00000459929	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	56	0	0	72	10	12.2	-	-	-	G	185267114	A	G	185267114	1	3	262	0	1	0	0	0	0	0	0	0	7984	406	14	5		5	IVNS1ABP	1	185267114	RNA	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	18303847	185267114	63983507	21	24399										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185267385	185267385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttccacacaactgatggcatGagaaccatcaaagccaccac	6	14	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	185267385	185267385	G	C	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	missense	c.1711	p.H571D	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	33	0	0	28	4	12.5	-	-	-	C	185267385	G	C	185267385	3	2	262	1	0	0	0	0	1	0	0	0	7984	1290	45	2	221	2	IVNS1ABP	1	185267385	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	271	185267385	63983236	22	24400										
MFSD4	0	genome.wustl.edu	37	chr1	205571467	205571467	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aatctggctggaaagagaaaCgtggctcaagtgctggctca	13	8	3	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	205571467	205571467	C	T	SNP	MFSD4	ENST00000478555	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MFSD4	HGNC	ENSG00000174514	71	0	0	52	7	11.86	-	-	-	T	205571467	C	T	205571467	1	4	262	0	1	0	0	0	0	0	0	0	9604	551	19	1		1	MFSD4	1	205571467	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	20304082	205571467	43679154	23	24401										
HHAT	0	genome.wustl.edu	37	chr1	210804430	210804430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgcatttcttacaaacagagGtactggctacctttgttccc	7	11	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	210804430	210804430	G	A	SNP	HHAT	ENST00000391905	human	ensembl	69_37n	1	known	missense	c.1480	p.V494I	0.001	NULL	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392	69	0	0	90	12	11.76	-	-	-	A	210804430	G	A	210804430	3	1	262	1	0	0	0	0	1	0	0	0	7140	1276	44	4		4	HHAT	1	210804430	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5232963	210804430	38446191	24	24402										
LYPLAL1	0	genome.wustl.edu	37	chr1	219352498	219352498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgattcatcaggtgattctgGacaaggattaagaatgtgga	12	4	3	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	219352498	219352498	G	T	SNP	LYPLAL1	ENST00000366928	human	ensembl	69_37n	1	known	missense	c.101	p.G34V	1.000	pfam_PLipase/COase/thioEstase	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353	41	0	0	54	7	11.29	-	-	-	T	219352498	G	T	219352498	3	4	262	1	0	0	0	0	1	0	0	0	9185	1174	41	2	107	2	LYPLAL1	1	219352498	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8548068	219352498	29898123	25	24403										
OBSCN	0	genome.wustl.edu	37	chr1	228560591	228560591	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cctggagatcacagaggagtCagaggatgtggacgcgctgc	16	9	2	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	228560591	228560591	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.22112	p.S7371L	0.985	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	55	0	0	38	5	11.63	-	-	-	T	228560591	C	T	228560591	3	4	262	1	0	0	0	0	1	0	0	0	10885	838	29	2	23692	2	OBSCN	1	228560591	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9208093	228560591	20690030	26	24404										
KMO	0	genome.wustl.edu	37	chr1	241718933	241718933	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atattctttctgtaagcagaGaaaatctaaacaaggatcta	6	6	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	241718933	241718933	G	C	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.334	p.E112Q	1.000	pfam_mOase_FAD-bd	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	79	0	0	53	6	10.17	-	-	-	C	241718933	G	C	241718933	3	2	262	1	0	0	0	0	1	0	0	0	8477	943	33	2	352	2	KMO	1	241718933	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	13158342	241718933	7531688	27	24405										
OR2M3	0	genome.wustl.edu	37	chr1	248366476	248366476	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tctggtcctggccatcttttCagtggccttcatgggaaact	10	11	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	1	248366476	248366476	C	T	SNP	OR2M3	ENST00000456743	human	ensembl	69_37n	1	known	missense	c.107	p.S36L	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M3	HGNC	ENSG00000228198	126	0	0	90	14	13.46	-	-	-	T	248366476	C	T	248366476	3	4	262	1	0	0	0	0	1	0	0	0	11084	838	29	2	109	2	OR2M3	1	248366476	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	6647543	248366476	884145	28	24406										
FEZ2	0	genome.wustl.edu	37	chr2	36781401	36781401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tataggtaggttcacaattaTagtcctaggttttcagagta	9	5	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	36781401	36781401	T	C	SNP	FEZ2	ENST00000432869	human	ensembl	69_37n	-1	known	missense	c.208	p.I70V	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FEZ2	HGNC	ENSG00000171055	30	0	0	24	5	17.24	-	-	-	C	36781401	T	C	36781401	3	2	262	1	0	0	0	0	1	0	0	0	5870	1421	49	5		5	FEZ2	2	36781401	Missense_Mutation	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09		36781401	206417972	29	24407										
NRXN1	0	genome.wustl.edu	37	chr2	51255012	51255012	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gacctccacccacttggcctCcacctggtcgatgaagagcg	10	16	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	51255012	51255012	C	G	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.400	p.E134Q	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	18	0	0	5	3	37.5	-	-	-	G	51255012	C	G	51255012	3	3	262	1	0	0	0	0	1	0	0	0	10738	864	30	2	4598	2	NRXN1	2	51255012	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	14473611	51255012	191944361	30	24408										
ASB3	0	genome.wustl.edu	37	chr2	53897525	53897525	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccccaaaacctaacctatctCacaatcaataatcatctttt	0	14	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	53897525	53897525	C	G	SNP	ASB3	ENST00000482829	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB3	HGNC	ENSG00000115239	53	0	0	60	7	10.45	-	-	-	G	53897525	C	G	53897525	1	3	262	0	1	0	0	0	0	0	0	0	1028	841	29	2		2	ASB3	2	53897525	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	2642513	53897525	189301848	31	24409										
ACYP2	0	genome.wustl.edu	37	chr2	54532174	54532174	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cattacaaaatatttagtgtGaacatttaatttaaacttgt	4	4	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	54532174	54532174	G	A	SNP	ACYP2	ENST00000494922	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACYP2	HGNC	ENSG00000170634	37	0	0	38	6	13.64	-	-	-	A	54532174	G	A	54532174	1	1	262	0	1	0	0	0	0	0	0	0	229	1305	45	2		2	ACYP2	2	54532174	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	634649	54532174	188667199	32	24410										
CCDC88A	0	genome.wustl.edu	37	chr2	55539682	55539682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atctagtagatgccgattttCttcttctaaatttcctttaa	4	8	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	55539682	55539682	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.3967	p.E1323Q	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	34	0	0	39	6	13.04	-	-	-	G	55539682	C	G	55539682	3	3	262	1	0	0	0	0	1	0	0	0	2890	922	32	2	1688	2	CCDC88A	2	55539682	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1007508	55539682	187659691	33	24411										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73300560	73300560	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agtgcttaaaacatgaagaaCaagctctttataaagagcct	7	7	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	73300560	73300560	C	G	SNP	RAB11FIP5	ENST00000493523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	18	0	0	26	5	16.13	-	-	-	G	73300560	C	G	73300560	1	3	262	0	1	0	0	0	0	0	0	0	12980	493	17	4		4	RAB11FIP5	2	73300560	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	17760878	73300560	169898813	34	24412										
NEB	0	genome.wustl.edu	37	chr2	152495886	152495886	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cttgtctttgtcccaggcttCtgtgtataaacgctatcaaa	7	10	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	152495886	152495886	C	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	nonsense	c.8902	p.E2968*	0.985	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	76	0	0	61	9	12.86	-	-	-	A	152495886	C	A	152495886	4	1	262	1	0	0	0	0	0	1	0	0	10374	922	32	2	17264	2	NEB	2	152495886	Nonsense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	79195326	152495886	90703487	35	24413										
SSFA2	0	genome.wustl.edu	37	chr2	182781087	182781087	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtgctctgtgaatcctccttCagccatagaaatgcagttgc	9	11	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	182781087	182781087	C	T	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.2720	p.S907L	0.998	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	29	0	0	24	6	20	-	-	-	T	182781087	C	T	182781087	3	4	262	1	0	0	0	0	1	0	0	0	15274	838	29	2	2762	2	SSFA2	2	182781087	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	30285201	182781087	60418286	36	24414										
TFPI	0	genome.wustl.edu	37	chr2	188332559	188332559	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	catccactgtacttaaatggGcggcatttcccaatgactga	8	11	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	188332559	188332559	G	A	SNP	TFPI	ENST00000233156	human	ensembl	69_37n	-1	known	silent	c.729	p.R243	0.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436	40	0	0	33	13	28.26	-	-	-	A	188332559	G	A	188332559	2	1	262	1	0	0	0	0	0	0	0	1	15903	1190	42	4		4	TFPI	2	188332559	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5551472	188332559	54866814	37	24415										
SPEG	0	genome.wustl.edu	37	chr2	220330976	220330976	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcccatgggcccctgtggacCctccctccccaagtggacac	10	19	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	220330976	220330976	C	A	SNP	SPEG	ENST00000462545	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	24	0	0	21	5	19.23	-	-	-	A	220330976	C	A	220330976	1	1	262	0	1	0	0	0	0	0	0	0	15127	638	22	4		4	SPEG	2	220330976	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	31998417	220330976	22868397	38	24416										
WDR69	0	genome.wustl.edu	37	chr2	228776996	228776996	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tctcgctctgtcgcccaggcTggagtgcagtggcacgatct	13	13	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	228776996	228776996	T	C	SNP	WDR69	ENST00000373666	human	ensembl	69_37n	1	novel	missense	c.1000	p.W334R	0.047	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR69	HGNC	ENSG00000123977	37	0	0	23	4	14.81	-	-	-	C	228776996	T	C	228776996	3	2	262	1	0	0	0	0	1	0	0	0	17416	1595	55	5		5	WDR69	2	228776996	Missense_Mutation	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	8446020	228776996	14422377	39	24417										
SPHKAP	0	genome.wustl.edu	37	chr2	228883051	228883051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gagggctttttgtatcctctCctgctattcctttcagatat	7	10	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	228883051	228883051	C	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.2519	p.G840V	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	84	0	0	56	11	16.42	-	-	-	A	228883051	C	A	228883051	3	1	262	1	0	0	0	0	1	0	0	0	15139	855	30	2	2607	2	SPHKAP	2	228883051	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	106055	228883051	14316322	40	24418										
COL6A3	0	genome.wustl.edu	37	chr2	238283134	238283134	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgggtcaccctctcagagatGacctgttggacggtccccag	12	13	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	2	238283134	238283134	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.3600	p.V1200	0.791	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	22	0	0	21	4	16	-	-	-	A	238283134	G	A	238283134	2	1	262	1	0	0	0	0	0	0	0	1	3731	1277	45	2		2	COL6A3	2	238283134	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	9400083	238283134	4916239	41	24419										
CELSR3	0	genome.wustl.edu	37	chr3	48678786	48678786	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggcgctgggcccggcccagaGaagtctcatccccactggtc	13	16	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	3	48678786	48678786	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.9011	p.S3004F	0.318	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	35	0	0	37	5	11.9	-	-	-	A	48678786	G	A	48678786	3	1	262	1	0	0	0	0	1	0	0	0	3252	942	33	2	954	2	CELSR3	3	48678786	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		48678786	149343644	42	24420										
USP19	0	genome.wustl.edu	37	chr3	49154009	49154009	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttctcatacgagtcattcttGacaaacgccaggttcaccat	6	12	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	3	49154009	49154009	G	A	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	silent	c.855	p.V285	1.000	pfam_DUF1872,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	104	0	0	71	14	16.47	-	-	-	A	49154009	G	A	49154009	2	1	262	1	0	0	0	0	0	0	0	1	17147	1277	45	2		2	USP19	3	49154009	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	475223	49154009	148868421	43	24421										
DBR1	0	genome.wustl.edu	37	chr3	137892403	137892403	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtaactcttgcaaatgatttGaggcttcatggtttccccca	8	10	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	3	137892403	137892403	G	C	SNP	DBR1	ENST00000260803	human	ensembl	69_37n	-1	known	nonsense	c.263	p.S88*	1.000	pfam_Metallo_PEstase_dom	pfam_DBR1_C,pfam_Metallo_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231	20	0	0	15	4	21.05	-	-	-	C	137892403	G	C	137892403	4	2	262	1	0	0	0	0	0	1	0	0	4289	1294	45	2	1399	2	DBR1	3	137892403	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	88738394	137892403	60130027	44	24422										
FOXL2	0	genome.wustl.edu	37	chr3	138665213	138665213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cttgcgctcgccgccgccctCgcgcggcaccttgatgaagc	12	18	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	3	138665213	138665213	C	T	SNP	FOXL2	ENST00000330315	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL2	HGNC	ENSG00000183770	88	0	0	52	12	18.75	-	-	-	T	138665213	C	T	138665213	3	4	262	1	0	0	0	0	1	0	0	0	6065	893	31	1	782	1	FOXL2	3	138665213	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	772810	138665213	59357217	45	24423										
PIK3CA	0	genome.wustl.edu	37	chr3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tttatgtaattttattaaagGttttgctatcggcatgccag	8	5	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	3	178917478	178917478	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.353	p.G118D	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	50	0	0	46	7	13.21	-	-	-	A	178917478	G	A	178917478	3	1	262	1	0	0	0	0	1	0	0	0	11987	1275	44	4	359	4	PIK3CA	3	178917478	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	40252265	178917478	19104952	46	24424										
CRIPAK	0	genome.wustl.edu	37	chr4	1389156	1389156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgcctgctcacatgtgccgaTgtggagtgcccgcctgctca	12	15	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	1389156	1389156	T	C	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	missense	c.857	p.M286T	0.000	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	87	0	0	51	13	20.31	-	-	-	C	1389156	T	C	1389156	3	2	262	1	0	0	0	0	1	0	0	0	3907	1464	51	5	859	5	CRIPAK	4	1389156	Missense_Mutation	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09		1389156	189765120	47	24425										
MAN2B2	0	genome.wustl.edu	37	chr4	6612852	6612852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgtggaacaacttcgactggGacctgggctacaacctcacg	11	12	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	6612852	6612852	G	A	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	missense	c.2410	p.D804N	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	29	0	0	23	6	20.69	-	-	-	A	6612852	G	A	6612852	3	1	262	1	0	0	0	0	1	0	0	0	9288	1174	41	2	2468	2	MAN2B2	4	6612852	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5223696	6612852	184541424	48	24426										
CC2D2A	0	genome.wustl.edu	37	chr4	15565037	15565037	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcgaccactgcggccaaggaGaaaaggtcggaagaaggtga	16	8	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	15565037	15565037	G	A	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.3074	p.R1025K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	61	0	0	32	4	10.81	-	-	-	A	15565037	G	A	15565037	3	1	262	1	0	0	0	0	1	0	0	0	2753	942	33	2	3367	2	CC2D2A	4	15565037	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8952185	15565037	175589239	49	24427										
WDFY3	0	genome.wustl.edu	37	chr4	85701312	85701312	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctggctagtgggttactcttGaccacacaaaccagggcctt	10	12	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	85701312	85701312	G	C	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.4314	p.V1438	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	58	0	0	38	11	22.45	-	-	-	C	85701312	G	C	85701312	2	2	262	1	0	0	0	0	0	0	0	1	17367	1277	45	2		2	WDFY3	4	85701312	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	70136275	85701312	105452964	50	24428										
UBE2D3	0	genome.wustl.edu	37	chr4	103747697	103747697	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtcgtctggctcctcactctCtcggtgtatgctcaaaggtc	10	13	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	103747697	103747697	C	G	SNP	UBE2D3	ENST00000513098	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	UBE2D3	HGNC	ENSG00000109332	57	0	0	51	6	10.53	-	-	-	G	103747697	C	G	103747697	1	3	262	0	1	0	0	0	0	0	0	0	16947	928	32	2		2	UBE2D3	4	103747697	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	18046385	103747697	87406579	51	24429										
ALPK1	0	genome.wustl.edu	37	chr4	113332979	113332979	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgatgttccacgctgttcctCcaggcgtccctgagggcctc	11	16	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	113332979	113332979	C	G	SNP	ALPK1	ENST00000505912	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ALPK1	HGNC	ENSG00000073331	58	0	0	38	5	11.63	-	-	-	G	113332979	C	G	113332979	1	3	262	0	1	0	0	0	0	0	0	0	544	870	30	2		2	ALPK1	4	113332979	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9585282	113332979	77821297	52	24430										
STOX2	0	genome.wustl.edu	37	chr4	184827952	184827952	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gccctccccaccatgaagaaGacccggagcacaaccttgcg	9	17	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	4	184827952	184827952	G	C	SNP	STOX2	ENST00000308497	human	ensembl	69_37n	1	known	missense	c.9	p.K3N	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320	71	0	0	42	10	18.87	-	-	-	C	184827952	G	C	184827952	3	2	262	1	0	0	0	0	1	0	0	0	15411	933	33	2	11	2	STOX2	4	184827952	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	71494973	184827952	6326324	53	24431										
MTRR	0	genome.wustl.edu	37	chr5	7886774	7886774	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcgggatgttctctccagttCatttttacctggtgtcttga	10	9	3	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	7886774	7886774	C	T	SNP	MTRR	ENST00000264668	human	ensembl	69_37n	1	known	silent	c.1185	p.F395	0.991	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	MTRR	HGNC	ENSG00000124275	65	0	0	59	11	15.71	-	-	-	T	7886774	C	T	7886774	2	4	262	1	0	0	0	0	0	0	0	1	10033	825	29	2		2	MTRR	5	7886774	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		7886774	173028486	54	24432										
NIPBL	0	genome.wustl.edu	37	chr5	37036544	37036544	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagcttgtactcaacttgttGataacctagttgagcacatt	7	8	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	37036544	37036544	G	C	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.5926	p.D1976H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	46	0	0	53	10	15.62	-	-	-	C	37036544	G	C	37036544	3	2	262	1	0	0	0	0	1	0	0	0	10500	1290	45	2	6052	2	NIPBL	5	37036544	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	29149770	37036544	143878716	55	24433										
NIPBL	0	genome.wustl.edu	37	chr5	37045655	37045655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcaccgttggagcactatgtCggcattttgattttgatctg	10	8	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	37045655	37045655	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.6454	p.R2152W	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	89	0	0	52	20	27.78	-	-	-	T	37045655	C	T	37045655	3	4	262	1	0	0	0	0	1	0	0	0	10500	875	31	1	6596	1	NIPBL	5	37045655	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9111	37045655	143869605	56	24434										
CCDC152	0	genome.wustl.edu	37	chr5	42762647	42762647	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	caaaggaggtctccattaaaGaaggttagttatttgctgcc	10	7	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	42762647	42762647	G	C	SNP	CCDC152	ENST00000361970	human	ensembl	69_37n	1	known	missense	c.190	p.E64Q	0.943	NULL	NULL	-	no_errors	CCDC152	HGNC	ENSG00000198865	36	0	0	49	11	18.33	-	-	-	C	42762647	G	C	42762647	3	2	262	1	0	0	0	0	1	0	0	0	2812	943	33	2	196	2	CCDC152	5	42762647	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5716992	42762647	138152613	57	24435										
SGTB	0	genome.wustl.edu	37	chr5	64981225	64981225	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cataggccttgctgtactttGaatcaattgctattgctttt	7	8	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	64981225	64981225	G	C	SNP	SGTB	ENST00000381007	human	ensembl	69_37n	-1	known	nonsense	c.449	p.S150*	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SGTB	HGNC	ENSG00000197860	66	0	0	33	5	12.82	-	-	-	C	64981225	G	C	64981225	4	2	262	1	0	0	0	0	0	1	0	0	14314	1294	45	2	489	2	SGTB	5	64981225	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	22218578	64981225	115934035	58	24436										
MAN2A1	0	genome.wustl.edu	37	chr5	109183374	109183374	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttaggtcagattgaagttatCatggatcgaagactcatgca	10	6	3	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	109183374	109183374	C	T	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	silent	c.2859	p.I953	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	44	0	0	22	6	21.43	-	-	-	T	109183374	C	T	109183374	2	4	262	1	0	0	0	0	0	0	0	1	9285	816	29	2		2	MAN2A1	5	109183374	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	44202149	109183374	71731886	59	24437										
REEP5	0	genome.wustl.edu	37	chr5	112222805	112222805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctcgtgcttcaggaagaaagGacggatgatgcgcttgtaga	14	7	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	112222805	112222805	G	C	SNP	REEP5	ENST00000379638	human	ensembl	69_37n	-1	known	missense	c.427	p.P143A	1.000	pfam_TB2_DP1_HVA22	pfam_TB2_DP1_HVA22	-	no_errors	REEP5	HGNC	ENSG00000129625	75	0	0	49	8	14.04	-	-	-	C	112222805	G	C	112222805	3	2	262	1	0	0	0	0	1	0	0	0	13291	1174	41	2	150	2	REEP5	5	112222805	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	3039431	112222805	68692455	60	24438										
ARHGAP26	0	genome.wustl.edu	37	chr5	142500691	142500691	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cagaacattgtcattgagatCctaatagaaaaccacgaaaa	6	8	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	142500691	142500691	C	G	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.1677	p.I559M	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	34	0	0	27	4	12.9	-	-	-	G	142500691	C	G	142500691	3	3	262	1	0	0	0	0	1	0	0	0	877	845	30	2	1747	2	ARHGAP26	5	142500691	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	30277886	142500691	38414569	61	24439										
UBLCP1	0	genome.wustl.edu	37	chr5	158710234	158710234	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	taatagataaggccttttatGaaagcgcacctaaatcgtga	8	7	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	158710234	158710234	G	A	SNP	UBLCP1	ENST00000296786	human	ensembl	69_37n	1	known	missense	c.816	p.M272I	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_HAD-SF_hydro_IIID	pfam_NIF,pfam_Ubiquitin,superfamily_HAD-like_dom,smart_Ubiquitin,smart_NIF,pfscan_NIF,pfscan_Ubiquitin_supergroup,tigrfam_HAD-SF_hydro_IIID	-	no_errors	UBLCP1	HGNC	ENSG00000164332	49	0	0	43	8	15.69	-	-	-	A	158710234	G	A	158710234	3	1	262	1	0	0	0	0	1	0	0	0	16988	1290	45	2	850	2	UBLCP1	5	158710234	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	16209543	158710234	22205026	62	24440										
ATP10B	0	genome.wustl.edu	37	chr5	160113187	160113187	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atgatgacgaacaggacaatGgccaatggtaacatggtgat	12	6	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	5	160113187	160113187	G	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.369	p.A123	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	42	0	0	34	4	10.26	-	-	-	T	160113187	G	T	160113187	2	4	262	1	0	0	0	0	0	0	0	1	1121	1335	47	4		4	ATP10B	5	160113187	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1402953	160113187	20802073	63	24441										
IRF4	0	genome.wustl.edu	37	chr6	395968	395968	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcactgggctccctgagggcGaggctgtgtgggccagctgc	18	12	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	395968	395968	G	C	SNP	IRF4	ENST00000468485	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IRF4	HGNC	ENSG00000137265	17	0	0	16	4	20	-	-	-	C	395968	G	C	395968	1	2	262	0	1	0	0	0	0	0	0	0	7886	1073	37	3		3	IRF4	6	395968	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		395968	170719099	64	24442										
SSR1	0	genome.wustl.edu	37	chr6	7288122	7288122	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agagcagacccctggcatctGaggatttaagagttcaactg	11	9	2	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	7288122	7288122	G	C	SNP	SSR1	ENST00000475213	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.858	-	-	-	no_errors	SSR1	HGNC	ENSG00000124783	17	0	0	16	4	20	-	-	-	C	7288122	G	C	7288122	1	2	262	0	1	0	0	0	0	0	0	0	15281	1305	45	2		2	SSR1	6	7288122	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	6892154	7288122	163826945	65	24443										
OR2J2	0	genome.wustl.edu	37	chr6	29141830	29141830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	acactgtcctcatgcaccctCgtttctgccacttgttggtt	7	14	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	29141830	29141830	C	A	SNP	OR2J2	ENST00000377167	human	ensembl	69_37n	1	known	missense	c.418	p.R140S	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700	96	0	0	72	14	16.28	-	-	-	A	29141830	C	A	29141830	3	1	262	1	0	0	0	0	1	0	0	0	11076	884	31	3	420	3	OR2J2	6	29141830	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	21853708	29141830	141973237	66	24444										
HLA-A	0	genome.wustl.edu	37	chr6	29912315	29912315	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccatccccatcgtgggcatcAttgctggcctggttctcctt	9	15	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	29912315	29912315	A	C	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	missense	c.934	p.I312L	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	91	0	0	70	8	10.26	-	-	-	C	29912315	A	C	29912315	3	2	262	1	0	0	0	0	1	0	0	0	7246	217	8	5	952	5	HLA-A	6	29912315	Missense_Mutation	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	770485	29912315	141202752	67	24445										
MRPS18B	0	genome.wustl.edu	37	chr6	30587740	30587740	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atccctgccccatctgtcgaGatcacaagttgcatgttgac	8	13	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	30587740	30587740	G	A	SNP	MRPS18B	ENST00000259873	human	ensembl	69_37n	1	known	missense	c.328	p.D110N	1.000	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568	79	0	0	49	9	15.52	-	-	-	A	30587740	G	A	30587740	3	1	262	1	0	0	0	0	1	0	0	0	9901	942	33	2	342	2	MRPS18B	6	30587740	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	675425	30587740	140527327	68	24446										
LY6G6F	0	genome.wustl.edu	37	chr6	31675666	31675666	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggatcccagttatctgcaaGggctgcagatggatccccct	11	12	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	31675666	31675666	G	C	SNP	LY6G6F	ENST00000556581	human	ensembl	69_37n	1	known	missense	c.401	p.R134T	0.045	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY6G6F	HGNC	ENSG00000204424	46	0	0	43	7	14	-	-	-	C	31675666	G	C	31675666	3	2	262	1	0	0	0	0	1	0	0	0	9163	1000	35	4	411	4	LY6G6F	6	31675666	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1087926	31675666	139439401	69	24447										
PHF1	0	genome.wustl.edu	37	chr6	33381882	33381882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagtccggagactacagcttCgctggtgagctggattgggc	15	9	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	33381882	33381882	C	T	SNP	PHF1	ENST00000374516	human	ensembl	69_37n	1	known	missense	c.748	p.R250C	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF1	HGNC	ENSG00000112511	54	0	0	41	5	10.87	-	-	-	T	33381882	C	T	33381882	3	4	262	1	0	0	0	0	1	0	0	0	11894	884	31	1	774	1	PHF1	6	33381882	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1706216	33381882	137733185	70	24448										
GSTA3	0	genome.wustl.edu	37	chr6	52770567	52770567	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tccactccagctgcagccaaGagccaccggatgggctccat	10	16	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	52770567	52770567	G	T	SNP	GSTA3	ENST00000211122	human	ensembl	69_37n	-1	known	silent	c.66	p.L22	0.995	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold,prints_GST_alpha	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA3	HGNC	ENSG00000174156	42	0	0	26	4	13.33	-	-	-	T	52770567	G	T	52770567	2	4	262	1	0	0	0	0	0	0	0	1	6883	929	33	2		2	GSTA3	6	52770567	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	19388685	52770567	118344500	71	24449										
BAI3	0	genome.wustl.edu	37	chr6	69703812	69703812	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgagaaatgtgacagacacAtttaaaagggcaagttacat	9	6	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	69703812	69703812	A	G	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	silent	c.1887	p.T629	0.345	pfam_DUF3497,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	46	0	0	24	8	25	-	-	-	G	69703812	A	G	69703812	2	3	262	1	0	0	0	0	0	0	0	1	1304	204	8	5		5	BAI3	6	69703812	Silent	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	16933245	69703812	101411255	72	24450										
MDN1	0	genome.wustl.edu	37	chr6	90437589	90437589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aatggcctgccttcaaagctGccagtaaggggccatcacgc	11	13	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	90437589	90437589	G	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.5435	p.A1812E	1.000	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	59	0	0	33	4	10.81	-	-	-	T	90437589	G	T	90437589	3	4	262	1	0	0	0	0	1	0	0	0	9486	1319	46	4	11619	4	MDN1	6	90437589	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	20733777	90437589	80677478	73	24451										
CASP8AP2	0	genome.wustl.edu	37	chr6	90573055	90573055	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagagcttgcaatgaaagctGagagtggtccaaatgaaaca	11	6	0	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	90573055	90573055	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.090	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	20	0	0	12	4	25	-	-	-	A	90573055	G	A	90573055	1	1	262	0	1	0	0	0	0	0	0	0	2703	1291	45	2		2	CASP8AP2	6	90573055	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	135466	90573055	80542012	74	24452										
MAP3K7	0	genome.wustl.edu	37	chr6	91261893	91261893	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	attttttatcagtggtggtcGagtacctacaattgaaaatg	9	5	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	91261893	91261893	G	A	SNP	MAP3K7	ENST00000369329	human	ensembl	69_37n	-1	known	nonsense	c.742	p.R248*	1.000	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341	25	0	0	32	10	23.81	-	-	-	A	91261893	G	A	91261893	4	1	262	1	0	0	0	0	0	1	0	0	9326	1066	37	1	1118	1	MAP3K7	6	91261893	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	688838	91261893	79853174	75	24453										
SHPRH	0	genome.wustl.edu	37	chr6	146268666	146268666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	catcttgcttgacatcttgtCgagtatgtgtcagaatcaga	9	8	4	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	146268666	146268666	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.1175	p.R392Q	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	44	0	0	20	6	23.08	-	-	-	T	146268666	C	T	146268666	3	4	262	1	0	0	0	0	1	0	0	0	14380	884	31	1	4020	1	SHPRH	6	146268666	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	55006773	146268666	24846401	76	24454										
SYNE1	0	genome.wustl.edu	37	chr6	152631999	152631999	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtcaatttctttggattcttCtagcagggtctagagtgaat	10	6	5	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	152631999	152631999	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.16720	p.E5574Q	0.999	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	36	0	0	30	6	16.67	-	-	-	G	152631999	C	G	152631999	3	3	262	1	0	0	0	0	1	0	0	0	15537	922	32	2	9982	2	SYNE1	6	152631999	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	6363333	152631999	18483068	77	24455										
TIAM2	0	genome.wustl.edu	37	chr6	155571697	155571697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgaatggagctcagaggtgaTggatgtactagatcccaggg	15	7	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	6	155571697	155571697	T	C	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.3977	p.M1326T	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	48	0	0	27	3	10	-	-	-	C	155571697	T	C	155571697	3	2	262	1	0	0	0	0	1	0	0	0	15986	1479	51	5		5	TIAM2	6	155571697	Missense_Mutation	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	2939698	155571697	15543370	78	24456										
TNRC18	0	genome.wustl.edu	37	chr7	5401603	5401603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggcgctgcacctcggccagcCgcatccggaagtccagctcc	12	18	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	5401603	5401603	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.4457	p.R1486Q	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	34	0	0	15	7	31.82	-	-	-	T	5401603	C	T	5401603	3	4	262	1	0	0	0	0	1	0	0	0	16434	652	23	1	4521	1	TNRC18	7	5401603	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		5401603	153737060	79	24457										
MACC1	0	genome.wustl.edu	37	chr7	20198202	20198202	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	actcctacataccattctttCactttggactgaccaatagc	4	13	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	20198202	20198202	C	T	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	silent	c.1782	p.V594	0.975	pfam_SH3_2	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	48	0	0	35	10	22.22	-	-	-	T	20198202	C	T	20198202	2	4	262	1	0	0	0	0	0	0	0	1	9210	813	29	2		2	MACC1	7	20198202	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	14796599	20198202	138940461	80	24458										
OSBPL3	0	genome.wustl.edu	37	chr7	24844008	24844008	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tctctctgcagttgttcaatCctctgcttttgtatttcagc	6	11	5	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	24844008	24844008	C	G	SNP	OSBPL3	ENST00000313367	human	ensembl	69_37n	-1	known	missense	c.2493	p.R831S	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	56	0	0	45	8	15.09	-	-	-	G	24844008	C	G	24844008	3	3	262	1	0	0	0	0	1	0	0	0	11352	854	30	2	178	2	OSBPL3	7	24844008	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	4645806	24844008	134294655	81	24459										
PLEKHA8	0	genome.wustl.edu	37	chr7	30118402	30118402	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggaatctgatgaggtggtatGatggctgctgggcagcacct	16	7	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	30118402	30118402	G	A	SNP	PLEKHA8	ENST00000449726	human	ensembl	69_37n	1	known	silent	c.1559	p.*520	1.000	NULL	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086	63	0	0	50	14	21.88	-	-	-	A	30118402	G	A	30118402	2	1	262	1	0	0	0	0	0	0	0	1	12136	1305	45	2		2	PLEKHA8	7	30118402	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5274394	30118402	129020261	82	24460										
NUDCD3	0	genome.wustl.edu	37	chr7	44524868	44524868	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atcctgacgggccatgtggtCaaaggttttgaatacctaaa	10	8	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	44524868	44524868	C	G	SNP	NUDCD3	ENST00000355451	human	ensembl	69_37n	-1	known	missense	c.208	p.D70H	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD3	HGNC	ENSG00000015676	38	0	0	36	10	21.74	-	-	-	G	44524868	C	G	44524868	3	3	262	1	0	0	0	0	1	0	0	0	10797	826	29	2	897	2	NUDCD3	7	44524868	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	14406466	44524868	114613795	83	24461										
ABCA13	0	genome.wustl.edu	37	chr7	48431572	48431572	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggaaccatcatcatcaatggCaagaacctacagacagacct	7	12	3	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	48431572	48431572	C	T	SNP	ABCA13	ENST00000453246	human	ensembl	69_37n	1	known	nonsense	c.505	p.Q169*	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA13	HGNC	ENSG00000179869	82	0	0	41	14	25.45	-	-	-	T	48431572	C	T	48431572	4	4	262	1	0	0	0	0	0	1	0	0	31	697	25	4	11688	4	ABCA13	7	48431572	Nonsense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	3906704	48431572	110707091	84	24462										
KCTD7	0	genome.wustl.edu	37	chr7	66240224	66240224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgaattgcagactccagcggGaggaagaagaggcctttgcc	14	9	0	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	66240224	66240224	G	A	SNP	KCTD7	ENST00000380828	human	ensembl	69_37n	1	known	missense	c.310	p.E104K	1.000	NULL	pfam_VPS9,pfam_Znf_A20,smart_Znf_A20,smart_VPS9_subgr,pfscan_VPS9,pfscan_Znf_A20	-	no_errors	KCTD7	HGNC	ENSG00000243335	85	0	0	62	14	18.42	-	-	-	A	66240224	G	A	66240224	3	1	262	1	0	0	0	0	1	0	0	0	8168	1175	41	2		2	KCTD7	7	66240224	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	17808652	66240224	92898439	85	24463										
LRCH4	0	genome.wustl.edu	37	chr7	100179964	100179964	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttgaggtaggtgagggctgtGagattccccaaggctgggtt	17	6	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	100179964	100179964	G	A	SNP	LRCH4	ENST00000310300	human	ensembl	69_37n	-1	known	silent	c.339	p.L113	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454	70	0	0	52	9	14.52	-	-	-	A	100179964	G	A	100179964	2	1	262	1	0	0	0	0	0	0	0	1	9001	1277	45	2		2	LRCH4	7	100179964	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	33939740	100179964	58958699	86	24464										
ZAN	0	genome.wustl.edu	37	chr7	100350126	100350126	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aacccaccatctccacagaaGagcccaccacccccactgag	5	20	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	100350126	100350126	G	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.2398	p.E800Q	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	45	0	0	41	5	10.42	-	-	-	C	100350126	G	C	100350126	3	2	262	1	0	0	0	0	1	0	0	0	17610	943	33	2	2448	2	ZAN	7	100350126	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	170162	100350126	58788537	87	24465										
SRPK2	0	genome.wustl.edu	37	chr7	104844105	104844105	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtccgcagggtcctcttgctCctcatcatctgatcccagga	9	15	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	104844105	104844105	C	A	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	nonsense	c.199	p.E67*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	72	0	0	28	4	12.5	-	-	-	A	104844105	C	A	104844105	4	1	262	1	0	0	0	0	0	1	0	0	15251	864	30	2	1956	2	SRPK2	7	104844105	Nonsense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	4493979	104844105	54294558	88	24466										
DGKI	0	genome.wustl.edu	37	chr7	137075847	137075847	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtggcatggtctcaggtagaTtcttgcaggagagagacaga	15	6	2	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	137075847	137075847	T	A	SNP	DGKI	ENST00000477835	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKI	HGNC	ENSG00000157680	57	0	0	36	11	22.92	-	-	-	A	137075847	T	A	137075847	1	1	262	0	1	0	0	0	0	0	0	0	4507	1508	52	5		5	DGKI	7	137075847	RNA	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	32231742	137075847	22062816	89	24467										
DGKI	0	genome.wustl.edu	37	chr7	137148264	137148264	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgggagtggctgagatctttCagatctgagtcctcataata	11	8	4	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	137148264	137148264	C	T	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	silent	c.2739	p.L913	0.975	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	38	0	0	20	8	28.57	-	-	-	T	137148264	C	T	137148264	2	4	262	1	0	0	0	0	0	0	0	1	4507	813	29	2		2	DGKI	7	137148264	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	72417	137148264	21990399	90	24468										
UBN2	0	genome.wustl.edu	37	chr7	138945999	138945999	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atcatttttgtcttcacagaGttgtggctctaaattcacac	6	9	5	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	138945999	138945999	G	T	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.907	p.V303F	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	38	0	0	34	4	10.53	-	-	-	T	138945999	G	T	138945999	3	4	262	1	0	0	0	0	1	0	0	0	16990	1043	36	4	929	4	UBN2	7	138945999	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1797735	138945999	20192664	91	24469										
GIMAP6	0	genome.wustl.edu	37	chr7	150325503	150325503	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gactcgaagacgtccctgccGaggatgctgtttcctgttgc	12	12	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	7	150325503	150325503	G	A	SNP	GIMAP6	ENST00000328902	human	ensembl	69_37n	-1	known	silent	c.183	p.L61	0.763	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP6	HGNC	ENSG00000133561	61	0	0	36	5	12.2	-	-	-	A	150325503	G	A	150325503	2	1	262	1	0	0	0	0	0	0	0	1	6435	1045	37	1		1	GIMAP6	7	150325503	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	11379504	150325503	8813160	92	24470										
FGF20	0	genome.wustl.edu	37	chr8	16850631	16850631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttctggaactctttctggatCcactggtctaggtaagaaat	9	8	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	16850631	16850631	C	T	SNP	FGF20	ENST00000180166	human	ensembl	69_37n	-1	known	missense	c.586	p.D196N	1.000	superfamily_Cytokine_IL1-like	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF20	HGNC	ENSG00000078579	45	0	0	40	7	14.89	-	-	-	T	16850631	C	T	16850631	3	4	262	1	0	0	0	0	1	0	0	0	5895	855	30	2	53	2	FGF20	8	16850631	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		16850631	129513391	93	24471										
ENTPD4	0	genome.wustl.edu	37	chr8	23305236	23305236	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggctttcggtttttatccctCatttgcctgatatccaacag	7	11	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	23305236	23305236	C	T	SNP	ENTPD4	ENST00000358689	human	ensembl	69_37n	-1	known	missense	c.369	p.M123I	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217	197	1	0.51	100	19	15.97	-	-	-	T	23305236	C	T	23305236	3	4	262	1	0	0	0	0	1	0	0	0	5178	826	29	2	1521	2	ENTPD4	8	23305236	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	6454605	23305236	123058786	94	24472										
STMN4	0	genome.wustl.edu	37	chr8	27099954	27099954	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttattcaggggatcggccagGaagcaggagcagaacaagga	15	7	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	27099954	27099954	G	C	SNP	STMN4	ENST00000350889	human	ensembl	69_37n	-1	known	missense	c.69	p.F23L	1.000	pirsf_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN4	HGNC	ENSG00000015592	57	0	0	62	9	12.68	-	-	-	C	27099954	G	C	27099954	3	2	262	1	0	0	0	0	1	0	0	0	15402	1165	41	2	601	2	STMN4	8	27099954	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	3794718	27099954	119264068	95	24473										
EPHX2	0	genome.wustl.edu	37	chr8	27399018	27399018	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	taaactggtaccgaaacatgGaaaggaactggaagtgggct	13	6	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	27399018	27399018	G	C	SNP	EPHX2	ENST00000521400	human	ensembl	69_37n	1	known	missense	c.1408	p.E470Q	0.129	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Epox_hydrolase-like,prints_Haloacid_DH/epoxide_hydro,prints_AB_hydrolase_1,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	EPHX2	HGNC	ENSG00000120915	63	0	0	49	6	10.91	-	-	-	C	27399018	G	C	27399018	3	2	262	1	0	0	0	0	1	0	0	0	5217	1175	41	2	1470	2	EPHX2	8	27399018	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	299064	27399018	118965004	96	24474										
TEX15	0	genome.wustl.edu	37	chr8	30705960	30705960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aaaaatgtgactactgtactCttttgtataagcattaccgg	7	7	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	30705960	30705960	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.574	p.E192Q	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	30	0	0	24	6	20	-	-	-	G	30705960	C	G	30705960	3	3	262	1	0	0	0	0	1	0	0	0	15874	922	32	2	7811	2	TEX15	8	30705960	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	3306942	30705960	115658062	97	24475										
ADRB3	0	genome.wustl.edu	37	chr8	37821534	37821534	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagttcaaggctggggtttaGaaaacatctctcagacagag	11	7	3	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	37821534	37821534	G	C	SNP	ADRB3	ENST00000520341	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADRB3	HGNC	ENSG00000188778	23	0	0	21	6	22.22	-	-	-	C	37821534	G	C	37821534	1	2	262	0	1	0	0	0	0	0	0	0	342	957	33	2		2	ADRB3	8	37821534	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	7115574	37821534	108542488	98	24476										
CHRNA6	0	genome.wustl.edu	37	chr8	42611013	42611013	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttggtttcattgtggctcttCatgttttctgctatgaactg	9	7	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	42611013	42611013	C	T	SNP	CHRNA6	ENST00000276410	human	ensembl	69_37n	-1	known	missense	c.1329	p.M443I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	37	0	0	38	7	15.56	-	-	-	T	42611013	C	T	42611013	3	4	262	1	0	0	0	0	1	0	0	0	3416	826	29	2	163	2	CHRNA6	8	42611013	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	4789479	42611013	103753009	99	24477			1	53		3	3	794	C		1.594435e-05
CHRNA6	0	genome.wustl.edu	37	chr8	42611024	42611024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtggctcttcatgttttctgCtatgaactgaacactgttaa	8	8	3	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	42611024	42611024	C	T	SNP	CHRNA6	ENST00000276410	human	ensembl	69_37n	-1	known	missense	c.1318	p.A440T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	39	0	0	42	7	14.29	-	-	-	T	42611024	C	T	42611024	3	4	262	1	0	0	0	0	1	0	0	0	3416	797	28	4	174	4	CHRNA6	8	42611024	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	11	42611024	103752998	100	24478			1	53		3	3	794	C		1.594435e-05
CHRNA6	0	genome.wustl.edu	37	chr8	42611806	42611806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tttcagctttgtcatacgtcCaggaaccaaattttagggaa	8	8	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	42611806	42611806	C	G	SNP	CHRNA6	ENST00000276410	human	ensembl	69_37n	-1	known	missense	c.536	p.W179S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	30	0	0	33	6	15	-	-	-	G	42611806	C	G	42611806	3	3	262	1	0	0	0	0	1	0	0	0	3416	595	21	4	956	4	CHRNA6	8	42611806	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	782	42611806	103752216	101	24479			1	53		3	3	794	C		1.594435e-05
HSF1	0	genome.wustl.edu	37	chr8	145533280	145533280	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagaggaaagtgaccagtgtGagtgccggccctgcaccctt	13	11	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	8	145533280	145533280	G	A	SNP	HSF1	ENST00000528988	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	HSF1	HGNC	ENSG00000185122	49	0	0	17	5	22.73	-	-	-	A	145533280	G	A	145533280	1	1	262	0	1	0	0	0	0	0	0	0	7446	1305	45	2		2	HSF1	8	145533280	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	102921474	145533280	830742	102	24480										
FAM154A	0	genome.wustl.edu	37	chr9	19033006	19033006	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggggcacgcccaggctcgagGgtcttggcaggtgttctgtt	17	10	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	19033006	19033006	G	T	SNP	FAM154A	ENST00000583128	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM154A	HGNC	ENSG00000155875	33	0	0	13	4	22.22	-	-	-	T	19033006	G	T	19033006	1	4	262	0	1	0	0	0	0	0	0	0	5503	1247	43	4		4	FAM154A	9	19033006	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		19033006	122180425	103	24481										
HAUS6	0	genome.wustl.edu	37	chr9	19060087	19060087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gaaagcattattaacttactCaagttttctggagtacgggg	10	6	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	19060087	19060087	C	G	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.1764	p.L588F	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	29	0	0	38	7	15.56	-	-	-	G	19060087	C	G	19060087	3	3	262	1	0	0	0	0	1	0	0	0	7021	840	29	2	1115	2	HAUS6	9	19060087	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	27081	19060087	122153344	104	24482										
C9orf72	0	genome.wustl.edu	37	chr9	27547313	27547313	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggcattttataatctcagaGttgcaatgattgccaaagca	8	7	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	27547313	27547313	G	T	SNP	C9orf72	ENST00000488117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf72	HGNC	ENSG00000147894	32	0	0	29	6	17.14	-	-	-	T	27547313	G	T	27547313	1	4	262	0	1	0	0	0	0	0	0	0	2520	1044	36	4		4	C9orf72	9	27547313	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8487226	27547313	113666118	105	24483										
RBM18	0	genome.wustl.edu	37	chr9	125003960	125003960	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcacaatttgggatacaacgCtatttattctggatgatgct	8	7	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	125003960	125003960	C	T	SNP	RBM18	ENST00000491850	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RBM18	HGNC	ENSG00000119446	15	0	0	23	5	17.86	-	-	-	T	125003960	C	T	125003960	1	4	262	0	1	0	0	0	0	0	0	0	13203	812	28	4		4	RBM18	9	125003960	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	97456647	125003960	16209471	106	24484										
NOTCH1	0	genome.wustl.edu	37	chr9	139402543	139402543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggcagtggtgcgtgttgcccGcgtccacacagagccctcca	13	15	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	139402543	139402543	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.3374	p.A1125V	0.430	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	55	0	0	49	7	12.5	-	-	-	A	139402543	G	A	139402543	3	1	262	1	0	0	0	0	1	0	0	0	10619	1087	38	1	4349	1	NOTCH1	9	139402543	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	14398583	139402543	1810888	107	24485										
LCN8	0	genome.wustl.edu	37	chr9	139650060	139650060	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtctaactccatcctgccccCacccagtcccagcacttgag	6	19	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	9	139650060	139650060	C	A	SNP	LCN8	ENST00000479767	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LCN8	HGNC	ENSG00000204001	70	0	0	55	9	14.06	-	-	-	A	139650060	C	A	139650060	1	1	262	0	1	0	0	0	0	0	0	0	8740	609	21	4		4	LCN8	9	139650060	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	247517	139650060	1563371	108	24486										
FRMD4A	0	genome.wustl.edu	37	chr10	13852855	13852855	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccaaagtactccttttccttCagattgaagtgagaagccac	7	11	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	13852855	13852855	C	G	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	silent	c.165	p.L55	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	49	0	0	41	10	19.23	-	-	-	G	13852855	C	G	13852855	2	3	262	1	0	0	0	0	0	0	0	1	6100	813	29	2		2	FRMD4A	10	13852855	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		13852855	121681892	109	24487										
GPR158	0	genome.wustl.edu	37	chr10	25890341	25890341	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctttaaggaatctttgtgaaCtgggttggaagttcctagac	11	6	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	25890341	25890341	C	T	SNP	GPR158	ENST00000490549	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPR158	HGNC	ENSG00000151025	20	0	0	16	4	20	-	-	-	T	25890341	C	T	25890341	1	4	262	0	1	0	0	0	0	0	0	0	6713	580	20	4		4	GPR158	10	25890341	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	12037486	25890341	109644406	110	24488										
FRMPD2	0	genome.wustl.edu	37	chr10	49388901	49388901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgggcactaagctctgcaccCcagccatgtctagttcttca	8	14	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	49388901	49388901	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2735	p.G912E	0.000	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	71	0	0	45	9	16.67	-	-	-	T	49388901	C	T	49388901	3	4	262	1	0	0	0	0	1	0	0	0	6107	623	22	4	1230	4	FRMPD2	10	49388901	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	23498560	49388901	86145846	111	24489										
C10orf128	0	genome.wustl.edu	37	chr10	50374819	50374819	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cagcctgttgggctctgcgcTtgtgggttcattcttgctgt	13	10	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	50374819	50374819	T	C	SNP	C10orf128	ENST00000374156	human	ensembl	69_37n	-1	known	silent	c.396	p.Q132	0.027	NULL	NULL	-	no_errors	C10orf128	HGNC	ENSG00000204161	55	0	0	37	8	17.78	-	-	-	C	50374819	T	C	50374819	2	2	262	1	0	0	0	0	0	0	0	1	1602	1624	56	5		5	C10orf128	10	50374819	Silent	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	985918	50374819	85159928	112	24490										
AGAP7	0	genome.wustl.edu	37	chr10	51465650	51465650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcttcagccatttcccacttCgctttaagagcatgccctgt	6	14	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	51465650	51465650	C	T	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.806	p.R269Q	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	138	0	0	78	12	13.19	-	-	-	T	51465650	C	T	51465650	3	4	262	1	0	0	0	0	1	0	0	0	373	884	31	1	1189	1	AGAP7	10	51465650	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1090831	51465650	84069097	113	24491										
DNAJB12	0	genome.wustl.edu	37	chr10	74104777	74104777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctccagcttcaccgttggccGagggggcatcggtcccacct	12	16	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	74104777	74104777	G	A	SNP	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	missense	c.344	p.S115L	0.996	NULL	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	22	0	0	19	6	23.08	-	-	-	A	74104777	G	A	74104777	3	1	262	1	0	0	0	0	1	0	0	0	4652	1059	37	1	913	1	DNAJB12	10	74104777	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	22639127	74104777	61429970	114	24492										
MYOZ1	0	genome.wustl.edu	37	chr10	75394302	75394302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcctctgccagcctggcccgCgggaccacctgtacccccag	10	20	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	75394302	75394302	C	T	SNP	MYOZ1	ENST00000359322	human	ensembl	69_37n	-1	known	missense	c.442	p.A148T	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791	45	0	0	31	4	11.43	-	-	-	T	75394302	C	T	75394302	3	4	262	1	0	0	0	0	1	0	0	0	10167	768	27	1	469	1	MYOZ1	10	75394302	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1289525	75394302	60140445	115	24493										
FAM22A	0	genome.wustl.edu	37	chr10	88992641	88992641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccgagaaacaacgggaagagGgcgaagtgaagcagccacag	15	9	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	88992641	88992641	G	A	SNP	FAM22A	ENST00000381707	human	ensembl	69_37n	1	known	missense	c.1633	p.G545S	0.007	NULL	NULL	-	no_errors	FAM22A	HGNC	ENSG00000184923	27	0	0	19	4	17.39	-	-	-	A	88992641	G	A	88992641	3	1	262	1	0	0	0	0	1	0	0	0	5585	1232	43	4	1651	4	FAM22A	10	88992641	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	13598339	88992641	46542106	116	24494										
BLOC1S2	0	genome.wustl.edu	37	chr10	102046401	102046401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccgggtcgccagtacgccctCggctgccgccgccatagcgg	14	18	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	102046401	102046401	C	T	SNP	BLOC1S2	ENST00000370372	human	ensembl	69_37n	-1	known	missense	c.16	p.E6K	0.970	NULL	pfam_BLOC1_su2	-	no_errors	BLOC1S2	HGNC	ENSG00000196072	10	0	0	9	5	35.71	-	-	-	T	102046401	C	T	102046401	3	4	262	1	0	0	0	0	1	0	0	0	1454	893	31	1	432	1	BLOC1S2	10	102046401	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	13053760	102046401	33488346	117	24495										
SEMA4G	0	genome.wustl.edu	37	chr10	102740337	102740337	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgctctttccataccagctGatggctggatccacaaggcc	9	14	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	102740337	102740337	G	A	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.1354	p.D452N	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	45	0	0	31	5	13.89	-	-	-	A	102740337	G	A	102740337	3	1	262	1	0	0	0	0	1	0	0	0	14124	1290	45	2	1396	2	SEMA4G	10	102740337	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	693936	102740337	32794410	118	24496										
PNLIP	0	genome.wustl.edu	37	chr10	118310640	118310640	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggtggaaagtgtgaactgtAtctgtgtggactggaaaggt	16	3	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	118310640	118310640	A	G	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	missense	c.355	p.I119V	0.512	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	61	0	0	53	10	15.87	-	-	-	G	118310640	A	G	118310640	3	3	262	1	0	0	0	0	1	0	0	0	12223	449	16	5	369	5	PNLIP	10	118310640	Missense_Mutation	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	15570303	118310640	17224107	119	24497										
ADAM12	0	genome.wustl.edu	37	chr10	127806611	127806611	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	caggtatcccccttacccttCttgcccatgtctgagagggt	9	14	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	10	127806611	127806611	C	A	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.608	p.R203I	0.829	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	66	0	0	57	7	10.94	-	-	-	A	127806611	C	A	127806611	3	1	262	1	0	0	0	0	1	0	0	0	236	913	32	2	2301	2	ADAM12	10	127806611	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9495971	127806611	7728136	120	24498										
RIC8A	0	genome.wustl.edu	37	chr11	213368	213368	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gagggcatgacagaggagcaGaaggagcacgaggccatgaa	17	7	0	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	213368	213368	G	T	SNP	RIC8A	ENST00000524854	human	ensembl	69_37n	1	novel	nonsense	c.247	p.E83*	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,prints_Synembryn	pfam_Gua_nucleotide_exch_fac_Ric8,prints_Synembryn	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIC8A	HGNC	ENSG00000177963	57	0	0	36	7	16.28	-	-	-	T	213368	G	T	213368	4	4	262	1	0	0	0	0	0	1	0	0	13439	933	33	2	1477	2	RIC8A	11	213368	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		213368	134793148	121	24499										
AP2A2	0	genome.wustl.edu	37	chr11	1010694	1010694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gtgccgtttgtcttcgtggcCatcctgcagatgagcaccgt	12	12	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	1010694	1010694	C	T	SNP	AP2A2	ENST00000534328	human	ensembl	69_37n	1	putative	missense	c.1124	p.P375L	0.003	NULL	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	-	no_errors	AP2A2	HGNC	ENSG00000183020	55	0	0	25	4	13.79	-	-	-	T	1010694	C	T	1010694	3	4	262	1	0	0	0	0	1	0	0	0	741	609	21	4		4	AP2A2	11	1010694	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	797326	1010694	133995822	122	24500										
NAP1L4	0	genome.wustl.edu	37	chr11	2966776	2966776	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	attgtgctgcggcaaggaccGaggccccgcccacaggcctg	14	15	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	2966776	2966776	G	A	SNP	NAP1L4	ENST00000469089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAP1L4	HGNC	ENSG00000205531	49	0	0	27	13	32.5	-	-	-	A	2966776	G	A	2966776	1	1	262	0	1	0	0	0	0	0	0	0	10231	1073	37	1		1	NAP1L4	11	2966776	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1956082	2966776	132039740	123	24501										
SLC6A5	0	genome.wustl.edu	37	chr11	20657903	20657903	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagccttaaccaggctgcctCtctctccgttctgggccatc	8	16	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	20657903	20657903	C	G	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	missense	c.1675	p.L559V	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	101	0	0	61	13	17.57	-	-	-	G	20657903	C	G	20657903	3	3	262	1	0	0	0	0	1	0	0	0	14776	913	32	2	1717	2	SLC6A5	11	20657903	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	17691127	20657903	114348613	124	24502										
SLC43A3	0	genome.wustl.edu	37	chr11	57177504	57177504	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggagagggaggatggggactGaggcacagagggcgaagccc	21	7	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	57177504	57177504	G	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	missense	c.1151	p.S384L	0.993	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	35	0	0	15	5	25	-	-	-	A	57177504	G	A	57177504	3	1	262	1	0	0	0	0	1	0	0	0	14723	1294	45	2	336	2	SLC43A3	11	57177504	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	36519601	57177504	77829012	125	24503										
SYT7	0	genome.wustl.edu	37	chr11	61290626	61290626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcgtctccctcagcttctccGtggggatatcgaaggcgaag	12	12	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	61290626	61290626	G	A	SNP	SYT7	ENST00000263846	human	ensembl	69_37n	-1	known	missense	c.1028	p.T343M	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT7	HGNC	ENSG00000011347	58	0	0	36	6	14.29	-	-	-	A	61290626	G	A	61290626	3	1	262	1	0	0	0	0	1	0	0	0	15571	1145	40	1	191	1	SYT7	11	61290626	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	4113122	61290626	73715890	126	24504										
GPR152	0	genome.wustl.edu	37	chr11	67220135	67220135	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggggtaggagtcctcatcatCaagctctgtgcggggcctgt	15	10	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	67220135	67220135	C	G	SNP	GPR152	ENST00000312457	human	ensembl	69_37n	-1	known	missense	c.61	p.D21H	0.007	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR152	HGNC	ENSG00000175514	38	0	0	22	4	15.38	-	-	-	G	67220135	C	G	67220135	3	3	262	1	0	0	0	0	1	0	0	0	6708	826	29	2	1355	2	GPR152	11	67220135	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	5929509	67220135	67786381	127	24505										
SHANK2	0	genome.wustl.edu	37	chr11	70803543	70803543	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgcaggagaagctcgcagcaGtagggatcacctccgacgat	13	11	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	70803543	70803543	G	T	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	nonsense	c.837	p.Y279*	0.973	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	46	0	0	23	4	14.81	-	-	-	T	70803543	G	T	70803543	4	4	262	1	0	0	0	0	0	1	0	0	14354	1024	36	4	4678	4	SHANK2	11	70803543	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	3583408	70803543	64202973	128	24506										
KRTAP5-10	0	genome.wustl.edu	37	chr11	71276831	71276831	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcctgctccagctgtggctcCtgtgggggctccaaggggga	16	12	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	71276831	71276831	C	G	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	1	known	silent	c.198	p.S66	0.922	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	78	0	0	65	10	13.33	-	-	-	G	71276831	C	G	71276831	2	3	262	1	0	0	0	0	0	0	0	1	8613	668	24	4		4	KRTAP5-10	11	71276831	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	473288	71276831	63729685	129	24507										
NUMA1	0	genome.wustl.edu	37	chr11	71715696	71715696	+	Missense_Mutation	SNP	C	C	T													0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ccgcgcctacctcaggagttCcagggccctggtggggctct							TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	71715696	71715696	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.5996	p.G1999E	0.998	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	25	0	0	18	5	21.74	-	-	-	T	71715696	C	T	71715696	3	4	262	1	0	0	0	0	1	0	0	0	10823	855	30	2	367	2	NUMA1	11	71715696	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	438865	71715696	63290820	130	24508	224	2								
NUMA1	0	genome.wustl.edu	37	chr11	71715697	71715697	+	Missense_Mutation	SNP	C	C	T													0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgcgcctacctcaggagttcCagggccctggtggggctcta							TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	71715697	71715697	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.5995	p.G1999R	0.997	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	24	0	0	19	5	20.83	-	-	-	T	71715697	C	T	71715697	3	4	262	1	0	0	0	0	1	0	0	0	10823	603	21	4	368	4	NUMA1	11	71715697	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1	71715697	63290819	131	24509	224	2								
ATM	0	genome.wustl.edu	37	chr11	108216491	108216491	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggtgcaaaaaaagtcttttGaagagaaatatgaagtcttc	9	4	2	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	108216491	108216491	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.8440	p.E2814K	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	44	0	0	50	7	12.28	-	-	-	A	108216491	G	A	108216491	3	1	262	1	0	0	0	0	1	0	0	0	1113	1291	45	2	8666	2	ATM	11	108216491	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	36500794	108216491	26790025	132	24510										
ZNF259	0	genome.wustl.edu	37	chr11	116658327	116658327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	actattatttctctgaagaaGggaatcttggtgagcaggag	12	5	2	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	116658327	116658327	G	T	SNP	ZNF259	ENST00000444935	human	ensembl	69_37n	-1	novel	missense	c.203	p.P68H	0.990	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF259	HGNC	ENSG00000109917	22	0	0	16	3	15.79	-	-	-	T	116658327	G	T	116658327	3	4	262	1	0	0	0	0	1	0	0	0	17897	987	35	4	1227	4	ZNF259	11	116658327	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8441836	116658327	18348189	133	24511										
FEZ1	0	genome.wustl.edu	37	chr11	125324076	125324076	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctggcggatgccactctgcaGaatgttggagatgccttcca	12	11	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	11	125324076	125324076	G	C	SNP	FEZ1	ENST00000278919	human	ensembl	69_37n	-1	known	missense	c.970	p.L324V	1.000	NULL	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557	55	0	0	41	5	10.87	-	-	-	C	125324076	G	C	125324076	3	2	262	1	0	0	0	0	1	0	0	0	5869	933	33	2	224	2	FEZ1	11	125324076	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8665749	125324076	9682440	134	24512										
WNK1	0	genome.wustl.edu	37	chr12	989090	989090	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgtgactcagctgccaagtCaggttcacccacagctccta	8	15	3	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	989090	989090	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	nonsense	c.4219	p.Q1407*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	63	0	0	38	6	13.64	-	-	-	T	989090	C	T	989090	4	4	262	1	0	0	0	0	0	1	0	0	17474	827	29	2	4269	2	WNK1	12	989090	Nonsense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		989090	132862805	135	24513										
SLC2A14	0	genome.wustl.edu	37	chr12	8023500	8023500	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	caagaagcgaccacagcacaAggggccacatccaatgtctt	9	13	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	8023500	8023500	A	G	SNP	SLC2A14	ENST00000544749	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	SLC2A14	HGNC	ENSG00000173262	53	0	0	36	5	12.2	-	-	-	G	8023500	A	G	8023500	1	3	262	0	1	0	0	0	0	0	0	0	14632	87	3	5		5	SLC2A14	12	8023500	RNA	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	7034410	8023500	125828395	136	24514										
DDX11	0	genome.wustl.edu	37	chr12	31236969	31236969	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agtttgtgcagaagaaagaaGagagggacctggtggaccga	16	5	0	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	31236969	31236969	G	C	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.367	p.E123Q	1.000	smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	86	0	0	85	23	21.1	-	-	-	C	31236969	G	C	31236969	3	2	262	1	0	0	0	0	1	0	0	0	4374	943	33	2	373	2	DDX11	12	31236969	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	23213469	31236969	102614926	137	24515										
DPY19L2	0	genome.wustl.edu	37	chr12	64057543	64057543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagaagaaacctaaccatttCagtgcgaaaagtcatctccc	6	11	3	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	64057543	64057543	C	T	SNP	DPY19L2	ENST00000324472	human	ensembl	69_37n	-1	known	missense	c.445	p.E149K	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L2	HGNC	ENSG00000177990	29	0	0	35	7	16.67	-	-	-	T	64057543	C	T	64057543	3	4	262	1	0	0	0	0	1	0	0	0	4776	835	29	2	1911	2	DPY19L2	12	64057543	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	32820574	64057543	69794352	138	24516										
C12orf50	0	genome.wustl.edu	37	chr12	88420369	88420369	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gctgagtttcccagaagcatGaaatgctgcagttttgctag	11	8	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	88420369	88420369	G	T	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	nonsense	c.29	p.S10*	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	44	0	0	21	4	16	-	-	-	T	88420369	G	T	88420369	4	4	262	1	0	0	0	0	0	1	0	0	1707	1294	45	2	1259	2	C12orf50	12	88420369	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	24362826	88420369	45431526	139	24517										
KCTD10	0	genome.wustl.edu	37	chr12	109889591	109889591	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	caaaatgttcagggtctcctCataaatccgggcttcgggaa	10	10	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	109889591	109889591	C	T	SNP	KCTD10	ENST00000228495	human	ensembl	69_37n	-1	known	missense	c.751	p.E251K	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	66	0	0	45	6	11.76	-	-	-	T	109889591	C	T	109889591	3	4	262	1	0	0	0	0	1	0	0	0	8151	835	29	2	194	2	KCTD10	12	109889591	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	21469222	109889591	23962304	140	24518										
ATXN2	0	genome.wustl.edu	37	chr12	111908400	111908400	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cacatgctgaacaaggggctGatttgggaactgctgaggac	14	8	0	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	111908400	111908400	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	nonsense	c.3145	p.Q1049*	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	128	0	0	67	8	10.53	-	-	-	A	111908400	G	A	111908400	4	1	262	1	0	0	0	0	0	1	0	0	1215	1299	45	2	824	2	ATXN2	12	111908400	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2018809	111908400	21943495	141	24519										
NAA25	0	genome.wustl.edu	37	chr12	112492280	112492280	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	acccagcatacagtagattcGaacaagcagcaatttgaact	7	10	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	12	112492280	112492280	G	T	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	silent	c.1540	p.R514	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	39	0	0	18	4	18.18	-	-	-	T	112492280	G	T	112492280	2	4	262	1	0	0	0	0	0	0	0	1	10193	1066	37	3		3	NAA25	12	112492280	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	583880	112492280	21359615	142	24520										
FRY	0	genome.wustl.edu	37	chr13	32768304	32768304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atcaacttggctgcgaagttGttgtcttgctactggaactt	10	8	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	13	32768304	32768304	G	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.3616	p.V1206F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	47	0	0	25	3	10.71	-	-	-	T	32768304	G	T	32768304	3	4	262	1	0	0	0	0	1	0	0	0	6112	1377	48	4	3730	4	FRY	13	32768304	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		32768304	82401574	143	24521										
TUBGCP3	0	genome.wustl.edu	37	chr13	113212675	113212675	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tggcatagtagtaaggggttGagtgggcatctcttggtaag	16	4	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	13	113212675	113212675	G	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	nonsense	c.383	p.S128*	1.000	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	38	0	0	19	4	17.39	-	-	-	T	113212675	G	T	113212675	4	4	262	1	0	0	0	0	0	1	0	0	16864	1294	45	2	2412	2	TUBGCP3	13	113212675	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	80444371	113212675	1957203	144	24522										
SOCS4	0	genome.wustl.edu	37	chr14	55494105	55494105	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggagtggttgggcctcccctCtccacttaagcaagcgccca	11	15	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	55494105	55494105	C	G	SNP	SOCS4	ENST00000553735	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SOCS4	HGNC	ENSG00000180008	32	0	0	17	7	29.17	-	-	-	G	55494105	C	G	55494105	1	3	262	0	1	0	0	0	0	0	0	0	15005	928	32	2		2	SOCS4	14	55494105	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		55494105	51855435	145	24523										
OTX2	0	genome.wustl.edu	37	chr14	57268525	57268525	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcagcattgaagttaagcttCcaggaggcagtttggtcctt	11	8	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	57268525	57268525	C	A	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	missense	c.822	p.W274C	1.000	NULL	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	58	0	0	32	7	17.95	-	-	-	A	57268525	C	A	57268525	3	1	262	1	0	0	0	0	1	0	0	0	11394	856	30	2	75	2	OTX2	14	57268525	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1774420	57268525	50081015	146	24524										
OTX2	0	genome.wustl.edu	37	chr14	57268551	57268551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggcagtttggtccttataatCcaagcaatcagtggttgagt	11	7	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	57268551	57268551	C	T	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	missense	c.796	p.D266N	1.000	prints_Otx_TF	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	57	0	0	35	6	14.63	-	-	-	T	57268551	C	T	57268551	3	4	262	1	0	0	0	0	1	0	0	0	11394	855	30	2	101	2	OTX2	14	57268551	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	26	57268551	50080989	147	24525										
SYNE2	0	genome.wustl.edu	37	chr14	64491747	64491747	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgccaagctttagctagaaaGaggtatagctgatcttgtat	10	6	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	64491747	64491747	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.5958	p.K1986N	0.973	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	58	0	0	66	9	12	-	-	-	C	64491747	G	C	64491747	3	2	262	1	0	0	0	0	1	0	0	0	15538	933	33	2	6112	2	SYNE2	14	64491747	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	7223196	64491747	42857793	148	24526										
ZFYVE26	0	genome.wustl.edu	37	chr14	68264774	68264774	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	accttgtgtctccactgggcCtcagagacaaccttggaaag	10	12	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	68264774	68264774	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	silent	c.2205	p.E735	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	82	0	0	39	10	20.41	-	-	-	T	68264774	C	T	68264774	2	4	262	1	0	0	0	0	0	0	0	1	17764	680	24	4		4	ZFYVE26	14	68264774	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	3773027	68264774	39084766	149	24527										
SYNJ2BP	0	genome.wustl.edu	37	chr14	70839389	70839389	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tggcatgccagctaagaaaaAaggtattgcctatggtgaca	11	7	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	70839389	70839389	A	C	SNP	SYNJ2BP	ENST00000554216	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	SYNJ2BP	HGNC	ENSG00000213463	45	0	0	33	7	17.5	-	-	-	C	70839389	A	C	70839389	1	2	262	0	1	0	0	0	0	0	0	0	15546	29	1	5		5	SYNJ2BP	14	70839389	RNA	SNP	A	TCGA-AC-A3W6-01A-12D-A228-09	2574615	70839389	36510151	150	24528										
TRIP11	0	genome.wustl.edu	37	chr14	92472654	92472654	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttctttctgtacatctaactCtttagtaatgtccattttat	3	8	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	92472654	92472654	C	G	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.1666	p.E556Q	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	41	0	0	42	6	12.5	-	-	-	G	92472654	C	G	92472654	3	3	262	1	0	0	0	0	1	0	0	0	16651	922	32	2	4317	2	TRIP11	14	92472654	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	21633265	92472654	14876886	151	24529										
DYNC1H1	0	genome.wustl.edu	37	chr14	102449769	102449769	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	acttgggatgatgagtatgaGaaacttcaggtattgttgag	13	3	1	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	102449769	102449769	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.1284	p.E428D	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	32	0	0	24	6	20	-	-	-	C	102449769	G	C	102449769	3	2	262	1	0	0	0	0	1	0	0	0	4876	933	33	2	1310	2	DYNC1H1	14	102449769	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	9977115	102449769	4899771	152	24530										
ZNF839	0	genome.wustl.edu	37	chr14	102808652	102808652	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agcaatgtatatttttctaaTgtgaatattgcacagatgaa	7	4	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	14	102808652	102808652	T	A	SNP	ZNF839	ENST00000420933	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF839	HGNC	ENSG00000022976	38	0	0	33	5	13.16	-	-	-	A	102808652	T	A	102808652	1	1	262	0	1	0	0	0	0	0	0	0	18281	1479	51	5		5	ZNF839	14	102808652	RNA	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	358883	102808652	4540888	153	24531										
FBN1	0	genome.wustl.edu	37	chr15	48802320	48802320	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgccatctgtgttgatgcaGcgtccattattgcagatccg	10	11	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	48802320	48802320	G	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.1635	p.R545	0.889	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	43	0	0	34	4	10.53	-	-	-	T	48802320	G	T	48802320	2	4	262	1	0	0	0	0	0	0	0	1	5748	958	34	4		4	FBN1	15	48802320	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		48802320	53729072	154	24532										
ZNF280D	0	genome.wustl.edu	37	chr15	56981521	56981521	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttgctagcatagcctgggaaGaagtcactgaaggagattta	12	6	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	56981521	56981521	G	T	SNP	ZNF280D	ENST00000267807	human	ensembl	69_37n	-1	known	missense	c.647	p.S216Y	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871	23	0	0	26	5	16.13	-	-	-	T	56981521	G	T	56981521	3	4	262	1	0	0	0	0	1	0	0	0	17913	942	33	2	2352	2	ZNF280D	15	56981521	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8179201	56981521	45549871	155	24533										
UBL7	0	genome.wustl.edu	37	chr15	74741602	74741602	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aaggcggtggccagctcactCtgggtgatgggccggggccc	18	12	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	74741602	74741602	C	G	SNP	UBL7	ENST00000361351	human	ensembl	69_37n	-1	known	missense	c.807	p.Q269H	1.000	NULL	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBL7	HGNC	ENSG00000138629	28	0	0	25	6	19.35	-	-	-	G	74741602	C	G	74741602	3	3	262	1	0	0	0	0	1	0	0	0	16987	912	32	2	347	2	UBL7	15	74741602	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	17760081	74741602	27789790	156	24534										
CSPG4	0	genome.wustl.edu	37	chr15	75982428	75982428	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgagaggcctctgcatccagCcccccgagaaggagactgcc	12	16	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	75982428	75982428	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.978	p.G326	0.969	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	123	1	0.81	95	13	11.93	-	-	-	T	75982428	C	T	75982428	2	4	262	1	0	0	0	0	0	0	0	1	3992	726	26	4		4	CSPG4	15	75982428	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1240826	75982428	26548964	157	24535										
KLHL25	0	genome.wustl.edu	37	chr15	86311422	86311422	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagtagcccccgaccacataGagcttgttgccggaagccag	11	13	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	86311422	86311422	G	C	SNP	KLHL25	ENST00000337975	human	ensembl	69_37n	-1	known	silent	c.1620	p.L540	0.992	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655	81	0	0	38	11	22.45	-	-	-	C	86311422	G	C	86311422	2	2	262	1	0	0	0	0	0	0	0	1	8433	929	33	2		2	KLHL25	15	86311422	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	10328994	86311422	16219970	158	24536										
DET1	0	genome.wustl.edu	37	chr15	89074361	89074361	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgaaggtcaatgatatggagGgaatagtcttctagagggga	15	3	3	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	89074361	89074361	G	T	SNP	DET1	ENST00000444300	human	ensembl	69_37n	-1	known	silent	c.609	p.S203	0.836	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	45	0	0	38	5	11.63	-	-	-	T	89074361	G	T	89074361	2	4	262	1	0	0	0	0	0	0	0	1	4486	1219	43	4		4	DET1	15	89074361	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2762939	89074361	13457031	159	24537										
IQGAP1	0	genome.wustl.edu	37	chr15	90991897	90991897	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agtcaccagccctggggcttCgaggactgcagcaacagaat	12	12	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	90991897	90991897	C	G	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	missense	c.1006	p.R336G	0.145	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	31	0	0	28	4	12.5	-	-	-	G	90991897	C	G	90991897	3	3	262	1	0	0	0	0	1	0	0	0	7868	876	31	3	1044	3	IQGAP1	15	90991897	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1917536	90991897	11539495	160	24538										
LRRK1	0	genome.wustl.edu	37	chr15	101549163	101549163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgcctggcgaccctcccctCggttatcccctggggcctca	10	19	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	15	101549163	101549163	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.884	p.S295L	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	53	0	0	43	6	12.24	-	-	-	T	101549163	C	T	101549163	3	4	262	1	0	0	0	0	1	0	0	0	9098	893	31	1	906	1	LRRK1	15	101549163	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	10557266	101549163	982229	161	24539										
WFIKKN1	0	genome.wustl.edu	37	chr16	682843	682843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gctgctatatggacgccgagGcctgcctgcggggcctgcac	15	14	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	682843	682843	G	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	69_37n	1	known	missense	c.433	p.A145S	1.000	pfam_Kazal-type_dom	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578	38	0	0	16	12	40	-	-	-	T	682843	G	T	682843	3	4	262	1	0	0	0	0	1	0	0	0	17455	1203	42	4	439	4	WFIKKN1	16	682843	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		682843	89671910	162	24540										
PKD1	0	genome.wustl.edu	37	chr16	2147213	2147213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggctgggctgctgaccccctCggcaaggacctgctggatca	14	14	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	2147213	2147213	C	T	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.10435	p.E3479K	0.019	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	80	0	0	51	14	21.54	-	-	-	T	2147213	C	T	2147213	3	4	262	1	0	0	0	0	1	0	0	0	12037	893	31	1	2528	1	PKD1	16	2147213	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1464370	2147213	88207540	163	24541										
ZG16B	0	genome.wustl.edu	37	chr16	2880415	2880415	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggcctctcttcttcccacaGagccctgggatgcaccggcc	10	17	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	2880415	2880415	G	C	SNP	ZG16B	ENST00000382280	human	ensembl	69_37n	1	known	splice_site	c.82-1	e2-1	0.751	-	-	-	no_errors	ZG16B	HGNC	ENSG00000162078	83	0	0	61	9	12.86	-	-	-	C	2880415	G	C	2880415	5	2	262	1	0	0	0	0	0	0	1	0	17768	956	33	2	87	2	ZG16B	16	2880415	Splice_Site	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	733202	2880415	87474338	164	24542										
FLYWCH1	0	genome.wustl.edu	37	chr16	2980496	2980496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttcctgtacaagcaggagaaGgcagtgggggacaaggtgta	16	6	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	2980496	2980496	G	T	SNP	FLYWCH1	ENST00000399667	human	ensembl	69_37n	1	known	missense	c.411	p.K137N	0.996	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	50	0	0	35	4	10.26	-	-	-	T	2980496	G	T	2980496	3	4	262	1	0	0	0	0	1	0	0	0	5993	991	35	4	414	4	FLYWCH1	16	2980496	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	100081	2980496	87374257	165	24543										
DEXI	0	genome.wustl.edu	37	chr16	11035432	11035432	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gagagggcacttacaggcctCggaggcaggggagggtctcc	18	10	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	11035432	11035432	C	T	SNP	DEXI	ENST00000469379	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	DEXI	HGNC	ENSG00000182108	44	0	0	39	11	22	-	-	-	T	11035432	C	T	11035432	1	4	262	0	1	0	0	0	0	0	0	0	4487	899	31	1		1	DEXI	16	11035432	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	8054936	11035432	79319321	166	24544										
CCDC101	0	genome.wustl.edu	37	chr16	28601977	28601977	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggtagatgacatcgatgaaGaaggcaaagagtgagtgtcc	14	5	0	6			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	28601977	28601977	G	C	SNP	CCDC101	ENST00000317058	human	ensembl	69_37n	1	known	missense	c.592	p.E198Q	1.000	pfam_SGF29_tudor-like_dom	pfam_SGF29_tudor-like_dom	-	no_errors	CCDC101	HGNC	ENSG00000176476	36	0	0	42	6	12.24	-	-	-	C	28601977	G	C	28601977	3	2	262	1	0	0	0	0	1	0	0	0	2760	943	33	2	618	2	CCDC101	16	28601977	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	17566545	28601977	61752776	167	24545										
CD2BP2	0	genome.wustl.edu	37	chr16	30364696	30364696	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cctccaagctcacctcctctCtgggtaggggttggggtctc	12	14	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	30364696	30364696	C	T	SNP	CD2BP2	ENST00000305596	human	ensembl	69_37n	-1	known	silent	c.801	p.Q267	0.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217	64	0	0	38	7	15.56	-	-	-	T	30364696	C	T	30364696	2	4	262	1	0	0	0	0	0	0	0	1	3024	912	32	2		2	CD2BP2	16	30364696	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1762719	30364696	59990057	168	24546										
CDH8	0	genome.wustl.edu	37	chr16	61851444	61851444	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttgcccaatcacggagtttaGagcagcattttcatgaactt	8	9	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	61851444	61851444	G	C	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1216	p.L406V	0.970	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	52	0	0	43	7	14	-	-	-	C	61851444	G	C	61851444	3	2	262	1	0	0	0	0	1	0	0	0	3145	933	33	2	1207	2	CDH8	16	61851444	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	31486748	61851444	28503309	169	24547										
CES2	0	genome.wustl.edu	37	chr16	66972118	66972118	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cctgaatcttggagtggtgtGagggatggaaccacccatcc	13	10	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	66972118	66972118	G	A	SNP	CES2	ENST00000317091	human	ensembl	69_37n	1	known	silent	c.447	p.V149	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831	31	0	0	22	5	18.52	-	-	-	A	66972118	G	A	66972118	2	1	262	1	0	0	0	0	0	0	0	1	3299	1277	45	2		2	CES2	16	66972118	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5120674	66972118	23382635	170	24548										
CDH1	0	genome.wustl.edu	37	chr16	68845600	68845600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cttccaggaacctctgtgatGgaggtcacagccacagacgc	11	13	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	68845600	68845600	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.846	p.M282I	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	63	0	0	36	4	10	-	-	-	T	68845600	G	T	68845600	3	4	262	1	0	0	0	0	1	0	0	0	3124	1348	47	4	872	4	CDH1	16	68845600	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1873482	68845600	21509153	171	24549										
HSDL1	0	genome.wustl.edu	37	chr16	84163866	84163866	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcgaattggaaggtagatctCacgaccgctgctgaagtccg	12	10	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	16	84163866	84163866	C	G	SNP	HSDL1	ENST00000219439	human	ensembl	69_37n	-1	known	missense	c.391	p.E131Q	0.998	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160	57	0	0	40	6	13.04	-	-	-	G	84163866	C	G	84163866	3	3	262	1	0	0	0	0	1	0	0	0	7444	835	29	2	613	2	HSDL1	16	84163866	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	15318266	84163866	6190887	172	24550										
MINK1	0	genome.wustl.edu	37	chr17	4799335	4799335	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagttcctggtcatcgccctCaagagctccgtggaggtgta	12	11	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	4799335	4799335	C	T	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	silent	c.3402	p.L1134	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	38	0	0	15	7	30.43	-	-	-	T	4799335	C	T	4799335	2	4	262	1	0	0	0	0	0	0	0	1	9658	813	29	2		2	MINK1	17	4799335	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		4799335	76395875	173	24551										
CHD3	0	genome.wustl.edu	37	chr17	7802461	7802461	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgacaccattctagctgatGagatggggctaggcaagacc	12	10	1	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	7802461	7802461	G	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.2284	p.E762K	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	60	0	0	34	7	16.67	-	-	-	A	7802461	G	A	7802461	3	1	262	1	0	0	0	0	1	0	0	0	3355	1291	45	2	2619	2	CHD3	17	7802461	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	3003126	7802461	73392749	174	24552										
NTN1	0	genome.wustl.edu	37	chr17	9086712	9086712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cagggggcccaggagctgggCgtgggggagaatcacatctt	18	9	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	9086712	9086712	C	T	SNP	NTN1	ENST00000436734	human	ensembl	69_37n	1	putative	missense	c.419	p.A140V	0.000	NULL	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	-	no_start_codon	NTN1	HGNC	ENSG00000065320	35	0	0	36	4	10	-	-	-	T	9086712	C	T	9086712	3	4	262	1	0	0	0	0	1	0	0	0	10773	783	27	1		1	NTN1	17	9086712	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1284251	9086712	72108498	175	24553										
FLII	0	genome.wustl.edu	37	chr17	18149365	18149365	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atgccctggttgtcctcactCtcaaagggaacctggggagt	12	11	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	18149365	18149365	C	T	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	silent	c.3279	p.E1093	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	43	0	0	14	4	22.22	-	-	-	T	18149365	C	T	18149365	2	4	262	1	0	0	0	0	0	0	0	1	5971	912	32	2		2	FLII	17	18149365	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9062653	18149365	63045845	176	24554										
POLDIP2	0	genome.wustl.edu	37	chr17	26677509	26677509	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	actgtctccaaggtgccagaGagactgaatatcctccagtg	10	11	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	26677509	26677509	G	A	SNP	POLDIP2	ENST00000003607	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.799	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	44	0	0	18	6	25	-	-	-	A	26677509	G	A	26677509	1	1	262	0	1	0	0	0	0	0	0	0	12268	929	33	2		2	POLDIP2	17	26677509	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8528144	26677509	54517701	177	24555										
DHX58	0	genome.wustl.edu	37	chr17	40256858	40256858	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	catcagcgtctccagcgcctCgttgatcagctcccgcttca	8	17	4	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	40256858	40256858	C	G	SNP	DHX58	ENST00000251642	human	ensembl	69_37n	-1	known	missense	c.1489	p.E497Q	1.000	pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	38	0	0	21	6	22.22	-	-	-	G	40256858	C	G	40256858	3	3	262	1	0	0	0	0	1	0	0	0	4550	893	31	3	563	3	DHX58	17	40256858	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	13579349	40256858	40938352	178	24556										
NMT1	0	genome.wustl.edu	37	chr17	43175799	43175799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgtgtgtccacaagaagctgCgttccaagagggttgctcca	12	10	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	43175799	43175799	C	T	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	missense	c.763	p.R255C	1.000	pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	53	0	0	22	4	15.38	-	-	-	T	43175799	C	T	43175799	3	4	262	1	0	0	0	0	1	0	0	0	10575	768	27	1	789	1	NMT1	17	43175799	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	2918941	43175799	38019411	179	24557										
BCAS3	0	genome.wustl.edu	37	chr17	59469713	59469713	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggtggaggctgtggccaggaGagactgtagaagctcggtcc	18	8	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	59469713	59469713	G	A	SNP	BCAS3	ENST00000585812	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.652	-	-	-	no_errors	BCAS3	HGNC	ENSG00000141376	153	0	0	78	18	18.75	-	-	-	A	59469713	G	A	59469713	1	1	262	0	1	0	0	0	0	0	0	0	1356	957	33	2		2	BCAS3	17	59469713	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	16293914	59469713	21725497	180	24558										
QRICH2	0	genome.wustl.edu	37	chr17	74287555	74287555	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgggtatacctggtcatgctCacctgggccaggtgatgcca	13	11	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	74287555	74287555	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.2755	p.E919K	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	65	0	0	13	9	40.91	-	-	-	T	74287555	C	T	74287555	3	4	262	1	0	0	0	0	1	0	0	0	12963	835	29	2	2300	2	QRICH2	17	74287555	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	14817842	74287555	6907655	181	24559										
RPTOR	0	genome.wustl.edu	37	chr17	78897547	78897547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atgggggctcatggcctcagCctcaggctgctcacatcacc	11	15	5	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	78897547	78897547	C	T	SNP	RPTOR	ENST00000576366	human	ensembl	69_37n	1	putative	missense	c.362	p.A121V	0.000	NULL	NULL	-	no_start_codon	RPTOR	HGNC	ENSG00000141564	65	0	0	45	6	11.76	-	-	-	T	78897547	C	T	78897547	3	4	262	1	0	0	0	0	1	0	0	0	13751	754	26	4		4	RPTOR	17	78897547	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	4609992	78897547	2297663	182	24560										
CCDC57	0	genome.wustl.edu	37	chr17	80071450	80071450	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gcctccattcattccccctcGcattcctggagcccacgtgc	7	19	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	17	80071450	80071450	G	A	SNP	CCDC57	ENST00000324808	human	ensembl	69_37n	-1	known	nonsense	c.676	p.R226*	0.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155	80	0	0	26	4	13.33	-	-	-	A	80071450	G	A	80071450	4	1	262	1	0	0	0	0	0	1	0	0	2854	1102	38	1		1	CCDC57	17	80071450	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1173903	80071450	1123760	183	24561										
CIDEA	0	genome.wustl.edu	37	chr18	12274135	12274135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctcgccgccgaagaggtcggGaatagcgagagtcaccttcg	14	12	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	18	12274135	12274135	G	T	SNP	CIDEA	ENST00000320477	human	ensembl	69_37n	1	known	missense	c.374	p.G125V	1.000	NULL	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEA	HGNC	ENSG00000176194	35	0	0	14	4	22.22	-	-	-	T	12274135	G	T	12274135	3	4	262	1	0	0	0	0	1	0	0	0	3454	1174	41	2	532	2	CIDEA	18	12274135	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		12274135	65803113	184	24562										
CXXC1	0	genome.wustl.edu	37	chr18	47811201	47811201	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggggactcttctgtgtcgctCatccagggctgcaagcaggg	15	11	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	18	47811201	47811201	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	69_37n	-1	known	missense	c.921	p.M307I	1.000	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832	48	0	0	19	10	34.48	-	-	-	T	47811201	C	T	47811201	3	4	262	1	0	0	0	0	1	0	0	0	4128	826	29	2	1093	2	CXXC1	18	47811201	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	35537066	47811201	30266047	185	24563										
AP3D1	0	genome.wustl.edu	37	chr19	2129159	2129159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttccaaaggagtaagagcacCgaactgtggggacagcaggg	15	8	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	2129159	2129159	C	T	SNP	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	missense	c.736	p.G246S	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	85	0	0	57	11	16.18	-	-	-	T	2129159	C	T	2129159	3	4	262	1	0	0	0	0	1	0	0	0	747	652	23	1	2975	1	AP3D1	19	2129159	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		2129159	56999824	186	24564										
ZNF653	0	genome.wustl.edu	37	chr19	11598467	11598467	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	caccactgtctccagggcttCaggcccattgcctgctgggt	11	15	2	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	11598467	11598467	C	T	SNP	ZNF653	ENST00000293771	human	ensembl	69_37n	-1	known	missense	c.811	p.E271K	0.891	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914	52	0	0	42	10	19.23	-	-	-	T	11598467	C	T	11598467	3	4	262	1	0	0	0	0	1	0	0	0	18162	835	29	2	1060	2	ZNF653	19	11598467	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9469308	11598467	47530516	187	24565										
PODNL1	0	genome.wustl.edu	37	chr19	14044771	14044771	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cggagttgagtctggcggctCagggctcctcggggcacctt	16	12	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	14044771	14044771	C	G	SNP	PODNL1	ENST00000588764	human	ensembl	69_37n	-1	putative	nonstop	c.218	p.*73S	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PODNL1	HGNC	ENSG00000132000	47	0	0	43	10	18.87	-	-	-	G	14044771	C	G	14044771	4	3	262	1	0	0	0	0	0	0	0	0	12253	813	29	2	838	2	PODNL1	19	14044771	Nonstop_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	2446304	14044771	45084212	188	24566										
CYP4F22	0	genome.wustl.edu	37	chr19	15662126	15662126	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aattgcatcggacagagcttCgccatggccgagttgcgcgt	13	11	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	15662126	15662126	C	T	SNP	CYP4F22	ENST00000269703	human	ensembl	69_37n	1	known	silent	c.1440	p.F480	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954	55	0	0	52	9	14.75	-	-	-	T	15662126	C	T	15662126	2	4	262	1	0	0	0	0	0	0	0	1	4220	883	31	1		1	CYP4F22	19	15662126	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	1617355	15662126	43466857	189	24567										
ZNF208	0	genome.wustl.edu	37	chr19	22154322	22154322	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aaagcctttgccacattcttCacatttgtagggtttctcta	6	10	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	22154322	22154322	C	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.3514	p.E1172Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	35	0	0	19	6	24	-	-	-	G	22154322	C	G	22154322	3	3	262	1	0	0	0	0	1	0	0	0	17862	835	29	2	332	2	ZNF208	19	22154322	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	6492196	22154322	36974661	190	24568										
ZNF208	0	genome.wustl.edu	37	chr19	22155757	22155757	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttgccacattcttcacatttGtagggtttctctccagtatg	7	10	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	22155757	22155757	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.2079	p.Y693	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	39	0	0	34	4	10.53	-	-	-	A	22155757	G	A	22155757	2	1	262	1	0	0	0	0	0	0	0	1	17862	1372	48	4		4	ZNF208	19	22155757	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1435	22155757	36973226	191	24569										
ZNF676	0	genome.wustl.edu	37	chr19	22363115	22363115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttctctgcagcatgaattctCttgtgtttagtaaagcttga	8	7	2	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	22363115	22363115	C	G	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.1404	p.K468N	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	52	0	0	29	6	17.14	-	-	-	G	22363115	C	G	22363115	3	3	262	1	0	0	0	0	1	0	0	0	18179	912	32	2	366	2	ZNF676	19	22363115	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	207358	22363115	36765868	192	24570										
ANKRD27	0	genome.wustl.edu	37	chr19	33098718	33098718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	acgttcacaccaagcccactGgcaggaaccttcgccagcct	8	17	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	33098718	33098718	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.2196	p.A732	0.041	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	62	0	0	42	9	17.65	-	-	-	A	33098718	G	A	33098718	2	1	262	1	0	0	0	0	0	0	0	1	655	1335	47	4		4	ANKRD27	19	33098718	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	10735603	33098718	26030265	193	24571										
ZNF382	0	genome.wustl.edu	37	chr19	37117321	37117321	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gagaaatcactcctcaatacCaagcatgagaaaattcatcc	5	11	3	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	37117321	37117321	C	G	SNP	ZNF382	ENST00000292928	human	ensembl	69_37n	1	known	silent	c.522	p.T174	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298	18	0	0	23	6	20	-	-	-	G	37117321	C	G	37117321	2	3	262	1	0	0	0	0	0	0	0	1	17969	581	21	4		4	ZNF382	19	37117321	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	4018603	37117321	22011662	194	24572										
PPM1N	0	genome.wustl.edu	37	chr19	46002814	46002814	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcaagcgaagggcgtggcctGaagtgggcagggccaaaata	16	8	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	46002814	46002814	G	T	SNP	PPM1N	ENST00000324688	human	ensembl	69_37n	1	known	nonsense	c.850	p.E284*	0.009	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1N	HGNC	ENSG00000213889	58	0	0	57	9	13.64	-	-	-	T	46002814	G	T	46002814	4	4	262	1	0	0	0	0	0	1	0	0	12423	1305	45	2		2	PPM1N	19	46002814	Nonsense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	8885493	46002814	13126169	195	24573										
EML2	0	genome.wustl.edu	37	chr19	46137704	46137704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cagcaaataaaggttggcccGgcagtctcggccacggtagc	13	12	1	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	46137704	46137704	G	A	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	missense	c.808	p.R270W	1.000	pfam_HELP,superfamily_Quinonprotein_ADH-like	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	95	0	0	68	12	14.81	-	-	-	A	46137704	G	A	46137704	3	1	262	1	0	0	0	0	1	0	0	0	5134	1115	39	1	1808	1	EML2	19	46137704	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	134890	46137704	12991279	196	24574										
KIR2DL4	0	genome.wustl.edu	37	chr19	55317456	55317456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggccgggccccacggttcgcGcaggagagaacgtgaccttg	16	13	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	55317456	55317456	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	missense	c.406	p.A136T	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	14	0	0	6	3	33.33	-	-	-	A	55317456	G	A	55317456	3	1	262	1	0	0	0	0	1	0	0	0	8371	1087	38	1	426	1	KIR2DL4	19	55317456	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	9179752	55317456	3811527	197	24575										
ZSCAN1	0	genome.wustl.edu	37	chr19	58549454	58549454	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tgctggagctgctggtgctgGagcagttcctgggcgcgctg	18	10	0	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	58549454	58549454	G	C	SNP	ZSCAN1	ENST00000282326	human	ensembl	69_37n	1	known	missense	c.250	p.E84Q	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	48	0	0	32	5	13.51	-	-	-	C	58549454	G	C	58549454	3	2	262	1	0	0	0	0	1	0	0	0	18319	1175	41	2	252	2	ZSCAN1	19	58549454	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	3231998	58549454	579529	198	24576										
CHMP2A	0	genome.wustl.edu	37	chr19	59063478	59063478	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tcaatggcatcattcatcatCtcctccttcatatccatgat	3	13	6	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	19	59063478	59063478	C	G	SNP	CHMP2A	ENST00000312547	human	ensembl	69_37n	-1	known	missense	c.423	p.E141D	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP2A	HGNC	ENSG00000130724	56	0	0	46	8	14.81	-	-	-	G	59063478	C	G	59063478	3	3	262	1	0	0	0	0	1	0	0	0	3383	912	32	2	257	2	CHMP2A	19	59063478	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	514024	59063478	65505	199	24577										
RBM39	0	genome.wustl.edu	37	chr20	34327232	34327232	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttatccagatttacaatgttGaagtggttaaatataatttc	6	4	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	20	34327232	34327232	G	A	SNP	RBM39	ENST00000463098	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.945	-	-	-	no_errors	RBM39	HGNC	ENSG00000131051	39	0	0	44	8	15.09	-	-	-	A	34327232	G	A	34327232	1	1	262	0	1	0	0	0	0	0	0	0	13216	1305	45	2		2	RBM39	20	34327232	RNA	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09		34327232	28698288	200	24578										
PTPRT	0	genome.wustl.edu	37	chr20	41408885	41408885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atgagcaaggacccggacctCgtccacggcgatgtagccag	13	13	0	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	20	41408885	41408885	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.541	p.E181K	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	60	0	0	33	4	10.81	-	-	-	T	41408885	C	T	41408885	3	4	262	1	0	0	0	0	1	0	0	0	12895	893	31	1	3957	1	PTPRT	20	41408885	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	7081653	41408885	21616635	201	24579										
DOPEY2	0	genome.wustl.edu	37	chr21	37635944	37635944	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cacctgggtattttctgcttCtcaggtatcatgtcaccaca	7	12	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	21	37635944	37635944	C	G	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.5416	p.L1806V	0.986	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	43	0	0	25	5	16.67	-	-	-	G	37635944	C	G	37635944	3	3	262	1	0	0	0	0	1	0	0	0	4743	913	32	2	5510	2	DOPEY2	21	37635944	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		37635944	10493951	202	24580										
LZTR1	0	genome.wustl.edu	37	chr22	21343956	21343956	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ggcctccaggaccgagagctCacctgctgggaggaggtgag	17	11	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	21343956	21343956	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	silent	c.636	p.L212	1.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	31	0	0	16	3	15.79	-	-	-	T	21343956	C	T	21343956	2	4	262	1	0	0	0	0	0	0	0	1	9204	813	29	2		2	LZTR1	22	21343956	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		21343956	29960610	203	24581										
GGTLC2	0	genome.wustl.edu	37	chr22	22988911	22988911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aagcccgagttctacacgccGgttgatgggggcactgctca	13	12	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	22988911	22988911	G	A	SNP	GGTLC2	ENST00000448514	human	ensembl	69_37n	1	known	silent	c.96	p.P32	0.990	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121	80	0	0	43	9	17.31	-	-	-	A	22988911	G	A	22988911	2	1	262	1	0	0	0	0	0	0	0	1	6418	1103	39	1		1	GGTLC2	22	22988911	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1644955	22988911	28315655	204	24582										
RGL4	0	genome.wustl.edu	37	chr22	24040042	24040042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cagggcaacaccaacaagagGagcaaggtgagcagctgggg	16	9	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	24040042	24040042	G	A	SNP	RGL4	ENST00000452208	human	ensembl	69_37n	1	novel	missense	c.298	p.E100K	0.000	superfamily_Ras_GEF_dom	superfamily_Ras_GEF_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RGL4	HGNC	ENSG00000159496	20	0	0	12	3	20	-	-	-	A	24040042	G	A	24040042	3	1	262	1	0	0	0	0	1	0	0	0	13362	1165	41	2	1288	2	RGL4	22	24040042	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	1051131	24040042	27264524	205	24583										
HPS4	0	genome.wustl.edu	37	chr22	26853885	26853885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgctatgcatcaggctgacgGcctggaggaagcggcgatcc	15	12	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	26853885	26853885	G	T	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	missense	c.1934	p.A645D	0.999	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	74	0	0	56	9	13.43	-	-	-	T	26853885	G	T	26853885	3	4	262	1	0	0	0	0	1	0	0	0	7392	1203	42	4	239	4	HPS4	22	26853885	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	2813843	26853885	24450681	206	24584										
KCTD17	0	genome.wustl.edu	37	chr22	37457643	37457643	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agggcttctcctcggcccctCgcccgcccccagagctgcca	10	21	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	37457643	37457643	C	T	SNP	KCTD17	ENST00000403888	human	ensembl	69_37n	1	known	silent	c.870	p.L290	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD17	HGNC	ENSG00000100379	28	0	0	38	8	17.39	-	-	-	T	37457643	C	T	37457643	2	4	262	1	0	0	0	0	0	0	0	1	8158	871	31	1		1	KCTD17	22	37457643	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	10603758	37457643	13846923	207	24585										
ATF4	0	genome.wustl.edu	37	chr22	39918248	39918248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	agtcctatctggggtctcctCagcacagcccctctaccagg	9	16	4	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	39918248	39918248	C	G	SNP	ATF4	ENST00000337304	human	ensembl	69_37n	1	known	missense	c.697	p.Q233E	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	64	0	0	50	9	15.25	-	-	-	G	39918248	C	G	39918248	3	3	262	1	0	0	0	0	1	0	0	0	1086	827	29	2	703	2	ATF4	22	39918248	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	2460605	39918248	11386318	208	24586										
PLXNB2	0	genome.wustl.edu	37	chr22	50728318	50728318	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gggtgcttgtcctgctggttGaagacaaagaagacgtaggg	16	6	0	4			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	22	50728318	50728318	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	silent	c.696	p.F232	0.998	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	55	0	0	38	12	23.53	-	-	-	A	50728318	G	A	50728318	2	1	262	1	0	0	0	0	0	0	0	1	12198	1281	45	2		2	PLXNB2	22	50728318	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	10810070	50728318	576248	209	24587										
SHROOM2	0	genome.wustl.edu	37	chrX	9863480	9863480	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgagagtcttcccccacccaCggtgggccagagcccacgcc	11	19	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	9863480	9863480	C	G	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.1532	p.T511R	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	40	0	0	32	5	13.51	-	-	-	G	9863480	C	G	9863480	3	3	262	1	0	0	0	0	1	0	0	0	14383	536	19	3	1546	3	SHROOM2	23	9863480	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09		9863480	145407080	210	24588										
CNKSR2	0	genome.wustl.edu	37	chrX	21444710	21444710	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ttacacatcaggagctagaaGatctgggggtcagccgcatt	12	9	3	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	21444710	21444710	G	T	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.160	p.D54Y	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	68	0	0	63	14	18.18	-	-	-	T	21444710	G	T	21444710	3	4	262	1	0	0	0	0	1	0	0	0	3637	942	33	2	166	2	CNKSR2	23	21444710	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	11581230	21444710	133825850	211	24589										
CNKSR2	0	genome.wustl.edu	37	chrX	21444778	21444778	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gttgaccttctgtgtgcattGgtaaggacataaaactggtg	12	6	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	21444778	21444778	G	A	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	silent	c.228	p.L76	1.000	superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	68	0	0	56	13	18.84	-	-	-	A	21444778	G	A	21444778	2	1	262	1	0	0	0	0	0	0	0	1	3637	1362	47	4		4	CNKSR2	23	21444778	Silent	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	68	21444778	133825782	212	24590										
GK	0	genome.wustl.edu	37	chrX	30714176	30714176	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tagagtttgacaggaggagtCaatggaggtgtccactgtac	14	6	1	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	30714176	30714176	C	T	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	silent	c.570	p.V190	0.355	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	88	0	0	35	13	27.08	-	-	-	T	30714176	C	T	30714176	2	4	262	1	0	0	0	0	0	0	0	1	6472	813	29	2		2	GK	23	30714176	Silent	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	9269398	30714176	124556384	213	24591										
CYBB	0	genome.wustl.edu	37	chrX	37670093	37670093	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgaagccttggctgaaaccCtgagtaaacaaagcatctcc	8	12	1	3			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	37670093	37670093	C	G	SNP	CYBB	ENST00000378588	human	ensembl	69_37n	1	known	missense	c.1636	p.L546V	0.997	pfam_Fe_red_NAD-bd_6,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168	55	0	0	55	18	24.32	-	-	-	G	37670093	C	G	37670093	3	3	262	1	0	0	0	0	1	0	0	0	4164	680	24	4	1686	4	CYBB	23	37670093	Missense_Mutation	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	6955917	37670093	117600467	214	24592										
TIMP1	0	genome.wustl.edu	37	chrX	47444879	47444879	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	atcagaaggccgggcctttgGcagcttggcagctcagccaa	13	12	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	47444879	47444879	G	C	SNP	TIMP1	ENST00000377018	human	ensembl	69_37n	1	known	missense	c.248	p.G83A	0.000	smart_Prot_inh_TIMP	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP	-	no_errors	TIMP1	HGNC	ENSG00000102265	68	0	0	54	9	14.29	-	-	-	C	47444879	G	C	47444879	3	2	262	1	0	0	0	0	1	0	0	0	16012	1218	42	4		4	TIMP1	23	47444879	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	9774786	47444879	107825681	215	24593										
IQSEC2	0	genome.wustl.edu	37	chrX	53267461	53267461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gctccccaccaggtactgcaGacagcaacttgatcccaaac	7	16	0	2			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	53267461	53267461	G	C	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3143	p.S1048C	1.000	smart_Pleckstrin_homology	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	19	0	0	18	7	28	-	-	-	C	53267461	G	C	53267461	3	2	262	1	0	0	0	0	1	0	0	0	7872	942	33	2	1339	2	IQSEC2	23	53267461	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	5822582	53267461	102003099	216	24594										
EDA2R	0	genome.wustl.edu	37	chrX	65819498	65819498	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cccagtgggagtggctctctGaggtgcaggaggccatggta	17	9	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	65819498	65819498	G	A	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	missense	c.785	p.S262L	0.928	prints_TNFR_27	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	48	0	0	30	8	21.05	-	-	-	A	65819498	G	A	65819498	3	1	262	1	0	0	0	0	1	0	0	0	4939	1294	45	2	175	2	EDA2R	23	65819498	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	12552037	65819498	89451062	217	24595										
ATP7A	0	genome.wustl.edu	37	chrX	77254129	77254129	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	tacatacaggtcactggcatGacttgcgcttcctgtgtagc	10	11	1	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	77254129	77254129	G	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.1491	p.M497I	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	25	0	0	16	4	20	-	-	-	C	77254129	G	C	77254129	3	2	262	1	0	0	0	0	1	0	0	0	1194	1290	45	2	1505	2	ATP7A	23	77254129	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	11434631	77254129	78016431	218	24596										
TAF7L	0	genome.wustl.edu	37	chrX	100538458	100538458	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	ctgagaaatgtctgctgtttTataaaaggtttttttatcaa	7	4	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	100538458	100538458	T	C	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.517	p.K173E	1.000	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	58	0	0	49	7	12.5	-	-	-	C	100538458	T	C	100538458	3	2	262	1	0	0	0	0	1	0	0	0	15625	1763	61	5	911	5	TAF7L	23	100538458	Missense_Mutation	SNP	T	TCGA-AC-A3W6-01A-12D-A228-09	23284329	100538458	54732102	219	24597										
BTK	0	genome.wustl.edu	37	chrX	100629447	100629447	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	cgttgcacagcatcaccagtCtatttacagagaatttaaat	6	9	2	1			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	100629447	100629447	C	G	SNP	BTK	ENST00000464567	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BTK	HGNC	ENSG00000010671	23	0	0	11	3	21.43	-	-	-	G	100629447	C	G	100629447	1	3	262	0	1	0	0	0	0	0	0	0	1566	928	32	2		2	BTK	23	100629447	RNA	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	90989	100629447	54641113	220	24598										
ZBTB33	0	genome.wustl.edu	37	chrX	119388279	119388279	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	aggaggaggaaataatagatGatgatgatgacactattagc	12	3	0	5			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	119388279	119388279	G	A	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	missense	c.1009	p.D337N	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	33	0	0	24	4	13.79	-	-	-	A	119388279	G	A	119388279	3	1	262	1	0	0	0	0	1	0	0	0	17632	1290	45	2	1011	2	ZBTB33	23	119388279	Missense_Mutation	SNP	G	TCGA-AC-A3W6-01A-12D-A228-09	18758832	119388279	35882281	221	24599										
PNCK	0	genome.wustl.edu	37	chrX	152939728	152939728	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.416289592760181	92	2.30922284165211e-31	3.8525824964132	4.8157281205165	3.21048541367767	1	1	68	gctccaccattaatccctcaCcctcgctttcttctctaccc	2	20	3	0			TCGA-AC-A3W6-01A-12D-A228-09	TCGA-AC-A3W6-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81fd007e-f718-4cfb-909b-88944ac9712d	648d0ca0-d1fb-4dcb-a056-291b9a1fa261	X	152939728	152939728	C	T	SNP	PNCK	ENST00000370142	human	ensembl	69_37n	-1	known	splice_site	c.1+1	e0+1	0.034	-	-	-	no_errors	PNCK	HGNC	ENSG00000130822	46	0	0	25	4	13.79	-	-	-	T	152939728	C	T	152939728	5	4	262	1	0	0	0	0	0	0	1	0	12219	522	18	4		4	PNCK	23	152939728	Splice_Site	SNP	C	TCGA-AC-A3W6-01A-12D-A228-09	33551449	152939728	2330832	222	24600										
C1orf127	0	genome.wustl.edu	37	chr1	11024262	11024262	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cggacacttcattatgtagcGatcactccgctccaacccca	6	16	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	11024262	11024262	G	A	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.439	p.R147C	0.029	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	111	0	0	70	19	21.35	-	-	-	A	11024262	G	A	11024262	3	1	263	1	0	0	0	0	1	0	0	0	2013	1058	37	1	2064	1	C1orf127	1	11024262	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		11024262	238226359	1	24601										
L1TD1	0	genome.wustl.edu	37	chr1	62676024	62676024	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aagaaaaagttggtgaaacaCcaggtggtgcacaaaaccca	10	8	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	62676024	62676024	C	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	silent	c.1578	p.H526	0.001	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	34	0	0	29	4	12.12	-	-	-	T	62676024	C	T	62676024	2	4	263	1	0	0	0	0	0	0	0	1	8643	506	18	4		4	L1TD1	1	62676024	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	51651762	62676024	186574597	2	24602										
DENND2D	0	genome.wustl.edu	37	chr1	111731934	111731934	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cttcatagacccccagaggaTttaccgtcttgatttctgcc	7	13	3	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	111731934	111731934	T	C	SNP	DENND2D	ENST00000468692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	41	0	0	30	8	21.05	-	-	-	C	111731934	T	C	111731934	1	2	263	0	1	0	0	0	0	0	0	0	4467	1508	52	5		5	DENND2D	1	111731934	RNA	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09	49055910	111731934	137518687	3	24603										
SNX27	0	genome.wustl.edu	37	chr1	151665018	151665018	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atcacagccatcagcatcacGcactttaaactgcatgcctg	6	14	3	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	151665018	151665018	G	A	SNP	SNX27	ENST00000368843	human	ensembl	69_37n	1	known	silent	c.1347	p.T449	1.000	NULL	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376	88	0	0	66	19	22.35	-	-	-	A	151665018	G	A	151665018	2	1	263	1	0	0	0	0	0	0	0	1	14986	1074	38	1		1	SNX27	1	151665018	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	39933084	151665018	97585603	4	24604										
FLG2	0	genome.wustl.edu	37	chr1	152325695	152325695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atgttgagatccactttggcCgtgagtgtgtcctgaatgtg	13	7	0	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	152325695	152325695	C	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.4567	p.G1523S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	189	1	0.52	243	54	18.12	-	-	-	T	152325695	C	T	152325695	3	4	263	1	0	0	0	0	1	0	0	0	5969	652	23	1	2612	1	FLG2	1	152325695	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	660677	152325695	96924926	5	24605										
MUC1	0	genome.wustl.edu	37	chr1	155162590	155162590	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ccctcacctgtaagcactgtGaggagcagcagcaggaagaa	12	11	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	155162590	155162590	G	A	SNP	MUC1	ENST00000425082	human	ensembl	69_37n	-1	known	silent	c.45	p.L15	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC1	HGNC	ENSG00000185499	88	0	0	68	14	17.07	-	-	-	A	155162590	G	A	155162590	2	1	263	1	0	0	0	0	0	0	0	1	10042	1277	45	2		2	MUC1	1	155162590	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	2836895	155162590	94088031	6	24606										
UCK2	0	genome.wustl.edu	37	chr1	165875181	165875181	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aagaagtatgctgatgtgatCatccctagaggtgcagataa	11	6	1	5			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	165875181	165875181	C	T	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.621	p.I207	0.958	pfam_PRK/URK,prints_Uridine_kinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	125	0	0	109	37	25.34	-	-	-	T	165875181	C	T	165875181	2	4	263	1	0	0	0	0	0	0	0	1	17021	816	29	2		2	UCK2	1	165875181	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	10712591	165875181	83375440	7	24607										
ELK4	0	genome.wustl.edu	37	chr1	205589824	205589824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctccattctccacatctttgGaactgctgctgacttcactg	6	14	3	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	205589824	205589824	G	T	SNP	ELK4	ENST00000357992	human	ensembl	69_37n	-1	known	missense	c.350	p.S117Y	0.967	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK4	HGNC	ENSG00000158711	56	0	0	46	11	19.3	-	-	-	T	205589824	G	T	205589824	3	4	263	1	0	0	0	0	1	0	0	0	5098	1174	41	2	1095	2	ELK4	1	205589824	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	39714643	205589824	43660797	8	24608										
EPRS	0	genome.wustl.edu	37	chr1	220197789	220197789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atgcaacattgcaacatcttCcaagataacctgtagtaaga	6	9	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	1	220197789	220197789	C	T	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.760	p.E254K	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_Ib_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	41	0	0	60	13	17.81	-	-	-	T	220197789	C	T	220197789	3	4	263	1	0	0	0	0	1	0	0	0	5228	864	30	2	3878	2	EPRS	1	220197789	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	14607965	220197789	29052832	9	24609										
CENPO	0	genome.wustl.edu	37	chr2	25038422	25038422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tctgcatcagtactgcttttGaggggaacctattggattcc	10	9	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	25038422	25038422	G	C	SNP	CENPO	ENST00000260662	human	ensembl	69_37n	1	known	missense	c.391	p.E131Q	1.000	pfam_Centromere_CenpO	pfam_Centromere_CenpO	-	no_errors	CENPO	HGNC	ENSG00000138092	112	0	0	72	19	20.88	-	-	-	C	25038422	G	C	25038422	3	2	263	1	0	0	0	0	1	0	0	0	3268	1291	45	2	405	2	CENPO	2	25038422	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		25038422	218160951	10	24610										
FAM82A1	0	genome.wustl.edu	37	chr2	38201314	38201314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tttacgtatgagtgagtctgGcaagtcggagagttttgaac	13	5	1	4			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	38201314	38201314	G	T	SNP	FAM82A1	ENST00000234195	human	ensembl	69_37n	1	known	missense	c.1118	p.G373V	0.001	NULL	NULL	-	no_errors	FAM82A1	HGNC	ENSG00000115841	32	0	0	34	4	10.53	-	-	-	T	38201314	G	T	38201314	3	4	263	1	0	0	0	0	1	0	0	0	5675	1203	42	4	1584	4	FAM82A1	2	38201314	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	13162892	38201314	204998059	11	24611										
RGPD4	0	genome.wustl.edu	37	chr2	108499277	108499277	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cttcttcctgttataaatacGatgttgcagctcagccctga	7	11	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	108499277	108499277	G	A	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	silent	c.5214	p.T1738	0.990	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	132	0	0	116	57	32.95	-	-	-	A	108499277	G	A	108499277	2	1	263	1	0	0	0	0	0	0	0	1	13371	1045	37	1		1	RGPD4	2	108499277	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	70297963	108499277	134700096	12	24612										
PKP4	0	genome.wustl.edu	37	chr2	159481709	159481709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	accaacccctcaataccaaaCcaccgccagagtggggtccc	7	18	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	159481709	159481709	C	A	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.923	p.T308N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	29	0	0	25	15	37.5	-	-	-	A	159481709	C	A	159481709	3	1	263	1	0	0	0	0	1	0	0	0	12061	507	18	4	945	4	PKP4	2	159481709	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	50982432	159481709	83717664	13	24613										
COBLL1	0	genome.wustl.edu	37	chr2	165542501	165542501	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gacatggaatggctgagtctTgaccttccattcacagatat	9	9	2	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	165542501	165542501	T	C	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	silent	c.3657	p.S1219	0.535	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	52	0	0	36	4	10	-	-	-	C	165542501	T	C	165542501	2	2	263	1	0	0	0	0	0	0	0	1	3684	1799	63	5		5	COBLL1	2	165542501	Silent	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09	6060792	165542501	77656872	14	24614										
TMEM169	0	genome.wustl.edu	37	chr2	216965075	216965075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cgctgctgtggtccagctctCgtggtcctgggaagcatggt	15	11	1	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	2	216965075	216965075	C	T	SNP	TMEM169	ENST00000295658	human	ensembl	69_37n	1	known	missense	c.704	p.S235L	1.000	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449	64	0	0	51	12	19.05	-	-	-	T	216965075	C	T	216965075	3	4	263	1	0	0	0	0	1	0	0	0	16179	893	31	1	710	1	TMEM169	2	216965075	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	51422574	216965075	26234298	15	24615										
GRM7	0	genome.wustl.edu	37	chr3	7732913	7732913	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atagtaacctctgaggacctCagcttgcacaaagaggattg	10	9	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	7732913	7732913	C	T	SNP	GRM7	ENST00000389335	human	ensembl	69_37n	1	known	silent	c.2715	p.L905	0.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	85	0	0	51	20	28.17	-	-	-	T	7732913	C	T	7732913	2	4	263	1	0	0	0	0	0	0	0	1	6853	841	29	2		2	GRM7	3	7732913	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09		7732913	190289517	16	24616										
GRM7	0	genome.wustl.edu	37	chr3	7735320	7735320	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gagctgttgtttttattcagGtgagaagtgcaactgctact	11	6	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	7735320	7735320	G	C	SNP	GRM7	ENST00000389336	human	ensembl	69_37n	1	known	missense	c.2699	p.S900T	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	51	0	0	33	7	17.07	-	-	-	C	7735320	G	C	7735320	3	2	263	1	0	0	0	0	1	0	0	0	6853	1276	44	4		4	GRM7	3	7735320	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	2407	7735320	190287110	17	24617										
NUP210	0	genome.wustl.edu	37	chr3	13378496	13378496	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agaagctttgctgcctccttCaagcagtgggagatgaaccc	11	11	1	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	13378496	13378496	C	T	SNP	NUP210	ENST00000485755	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP210	HGNC	ENSG00000132182	34	0	0	30	8	21.05	-	-	-	T	13378496	C	T	13378496	1	4	263	0	1	0	0	0	0	0	0	0	10833	841	29	2		2	NUP210	3	13378496	RNA	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	5643176	13378496	184643934	18	24618										
HACL1	0	genome.wustl.edu	37	chr3	15642907	15642907	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tacttgcgttttcagggcctGagcgatgactttagcaccag	11	10	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	15642907	15642907	G	A	SNP	HACL1	ENST00000321169	human	ensembl	69_37n	-1	known	nonsense	c.64	p.Q22*	0.997	pfam_Thiamin_PyroP_enz_TPP-bd_dom	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_Thiamin_PyroP_enz_cen_dom,pfam_TPP_enzyme-bd_C,pfam_CO_DH_CoA_synth	-	no_errors	HACL1	HGNC	ENSG00000131373	88	0	0	53	7	11.67	-	-	-	A	15642907	G	A	15642907	4	1	263	1	0	0	0	0	0	1	0	0	6992	1299	45	2	1740	2	HACL1	3	15642907	Nonsense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	2264411	15642907	182379523	19	24619										
EXOG	0	genome.wustl.edu	37	chr3	38537966	38537966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ggagctgggctcgcggccctGcagttcttccggagtcaggg	17	12	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	38537966	38537966	G	A	SNP	EXOG	ENST00000287675	human	ensembl	69_37n	1	known	silent	c.108	p.L36	0.135	NULL	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	EXOG	HGNC	ENSG00000157036	183	0	0	151	65	29.95	-	-	-	A	38537966	G	A	38537966	2	1	263	1	0	0	0	0	0	0	0	1	5348	1306	46	4		4	EXOG	3	38537966	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	22895059	38537966	159484464	20	24620										
NBEAL2	0	genome.wustl.edu	37	chr3	47049023	47049023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tcactgggtcaggacgcagcGactgctgagtggcccgtggg	17	11	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	47049023	47049023	G	A	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.7343	p.R2448Q	1.000	smart_WD40_repeat	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	34	0	0	31	4	11.43	-	-	-	A	47049023	G	A	47049023	3	1	263	1	0	0	0	0	1	0	0	0	10261	1058	37	1	7533	1	NBEAL2	3	47049023	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	8511057	47049023	150973407	21	24621										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	52	0	0	55	22	28.57	-	-	-	A	178936091	G	A	178936091	3	1	263	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	131887068	178936091	19086339	22	24622										
AFP	0	genome.wustl.edu	37	chr4	74321366	74321366	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aggggaagagaagacaaaacGagtctttcattcggtgtgaa	13	5	2	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	4	74321366	74321366	G	A	SNP	AFP	ENST00000226359	human	ensembl	69_37n	1	putative	missense	c.1804	p.E602K	0.000	superfamily_Serum_albumin-like,pirsf_Serum_albumin_subgr	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Alpha-fetoprotein,prints_Serum_albumin	-	no_errors	AFP	HGNC	ENSG00000081051	75	0	0	84	15	15.15	-	-	-	A	74321366	G	A	74321366	3	1	263	1	0	0	0	0	1	0	0	0	363	1073	37	1		1	AFP	4	74321366	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		74321366	116832910	23	24623			1	54		2	2	19	G		4.767831e-05
AFP	0	genome.wustl.edu	37	chr4	74321384	74321384	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	acgagtctttcattcggtgtGaacttttctctttaatttta	6	7	3	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	4	74321384	74321384	G	T	SNP	AFP	ENST00000226359	human	ensembl	69_37n	1	putative	nonsense	c.1822	p.E608*	0.004	pirsf_Serum_albumin_subgr	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Alpha-fetoprotein,prints_Serum_albumin	-	no_errors	AFP	HGNC	ENSG00000081051	82	0	0	90	18	16.67	-	-	-	T	74321384	G	T	74321384	4	4	263	1	0	0	0	0	0	1	0	0	363	1305	45	2		2	AFP	4	74321384	Nonsense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	18	74321384	116832892	24	24624			1	54		2	2	19	G		4.767831e-05
C4orf21	0	genome.wustl.edu	37	chr4	113508772	113508772	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tgggatgtgttttgatatttCagccacttgctctgagtaga	11	6	2	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	4	113508772	113508772	C	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	silent	c.3441	p.L1147	1.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	34	0	0	25	8	24.24	-	-	-	T	113508772	C	T	113508772	2	4	263	1	0	0	0	0	0	0	0	1	2275	813	29	2		2	C4orf21	4	113508772	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	39187388	113508772	77645504	25	24625										
NAF1	0	genome.wustl.edu	37	chr4	164085408	164085408	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tttgttttaagaggaaaattCttattttccttctcaatttg	5	5	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	4	164085408	164085408	C	G	SNP	NAF1	ENST00000274054	human	ensembl	69_37n	-1	known	missense	c.501	p.K167N	1.000	NULL	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	NAF1	HGNC	ENSG00000145414	24	0	0	24	5	17.24	-	-	-	G	164085408	C	G	164085408	3	3	263	1	0	0	0	0	1	0	0	0	10212	912	32	2	1152	2	NAF1	4	164085408	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	50576636	164085408	27068868	26	24626										
NEIL3	0	genome.wustl.edu	37	chr4	178274472	178274472	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctccttccagattcagtgctCaagagtgaagaaaattctac	7	10	3	4			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	4	178274472	178274472	C	T	SNP	NEIL3	ENST00000264596	human	ensembl	69_37n	1	known	silent	c.1050	p.L350	0.000	NULL	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674	64	0	0	37	21	36.21	-	-	-	T	178274472	C	T	178274472	2	4	263	1	0	0	0	0	0	0	0	1	10392	813	29	2		2	NEIL3	4	178274472	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	14189064	178274472	12879804	27	24627										
SLC26A2	0	genome.wustl.edu	37	chr5	149361212	149361212	+	Frame_Shift_Del	DEL	T	T	-													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tccaggttctgctggctcagTgcaatcccactgtgagggat							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	5	149361212	149361212	T	-	DEL	SLC26A2	ENST00000286298	human	ensembl	69_37n	1	known	frame_shift_del	c.2056	p.C686fs	0.998	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850	53	0	0	28	5	14.71	-	-	-	-	149361212	T	-	149361212	7	5	263	1	0	1	0	1	0	0	0	0	14606	1696	59	0	2062	0	SLC26A2	5	149361212	Frame_Shift_Del	DEL	T	TCGA-AC-A3W7-01A-11D-A228-09		149361212	31554048	28	24628										
TNXB	0	genome.wustl.edu	37	chr6	32052279	32052279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	acttgcggccaggatccaggGaggtgatgacggccgagcgc	17	11	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	6	32052279	32052279	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.3356	p.S1119F	0.044	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	66	0	0	57	18	24	-	-	-	A	32052279	G	A	32052279	3	1	263	1	0	0	0	0	1	0	0	0	16441	1174	41	2	11505	2	TNXB	6	32052279	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		32052279	139062788	29	24629										
COL11A2	0	genome.wustl.edu	37	chr6	33133527	33133527	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctgcatcagacggcttccatCcaccgagcgccgagtcttct	9	16	3	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	6	33133527	33133527	C	A	SNP	COL11A2	ENST00000341947	human	ensembl	69_37n	-1	known	missense	c.4549	p.D1517Y	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	32	0	0	25	12	32.43	-	-	-	A	33133527	C	A	33133527	3	1	263	1	0	0	0	0	1	0	0	0	3698	855	30	2	677	2	COL11A2	6	33133527	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	1081248	33133527	137981540	30	24630										
RBAK	0	genome.wustl.edu	37	chr7	5103887	5103887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctttgaatgcagtgaatgtgGaaaatccttctgtaaaaagt	9	5	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	5103887	5103887	G	T	SNP	RBAK	ENST00000353796	human	ensembl	69_37n	1	known	missense	c.800	p.G267V	0.516	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	31	0	0	25	8	24.24	-	-	-	T	5103887	G	T	5103887	3	4	263	1	0	0	0	0	1	0	0	0	13183	1174	41	2	814	2	RBAK	7	5103887	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		5103887	154034776	31	24631										
MACC1	0	genome.wustl.edu	37	chr7	20193845	20193845	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aacatctccagtgtttcctcGatgaggaatttcatatgcct	7	10	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	20193845	20193845	G	A	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	nonsense	c.2317	p.R773*	0.648	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	43	0	0	30	10	25	-	-	-	A	20193845	G	A	20193845	4	1	263	1	0	0	0	0	0	1	0	0	9210	1066	37	1	249	1	MACC1	7	20193845	Nonsense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	15089958	20193845	138944818	32	24632										
ABCA13	0	genome.wustl.edu	37	chr7	48431660	48431660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tgttggacaacctcaccgtcCgggaacatttgctgctcttt	9	12	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	48431660	48431660	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.11797	p.R3933W	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	77	0	0	49	10	16.95	-	-	-	T	48431660	C	T	48431660	3	4	263	1	0	0	0	0	1	0	0	0	31	643	23	1	11776	1	ABCA13	7	48431660	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	28237815	48431660	110707003	33	24633										
TPST1	0	genome.wustl.edu	37	chr7	65705583	65705583	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gtgagaactggcctggacctCaaagccaacaaaacctttgc	9	12	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	65705583	65705583	C	A	SNP	TPST1	ENST00000304842	human	ensembl	69_37n	1	known	silent	c.171	p.L57	0.128	NULL	pfam_Sulfotransferase_dom	-	no_errors	TPST1	HGNC	ENSG00000169902	67	0	0	29	19	39.58	-	-	-	A	65705583	C	A	65705583	2	1	263	1	0	0	0	0	0	0	0	1	16523	813	29	2		2	TPST1	7	65705583	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	17273923	65705583	93433080	34	24634										
SGCE	0	genome.wustl.edu	37	chr7	94257530	94257530	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ttacctcaatgattgttggcTtccccacattttcagctgtt	6	11	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	94257530	94257530	T	G	SNP	SGCE	ENST00000445866	human	ensembl	69_37n	-1	known	missense	c.374	p.K125T	1.000	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990	73	0	0	41	10	19.61	-	-	-	G	94257530	T	G	94257530	3	3	263	1	0	0	0	0	1	0	0	0	14290	1609	56	5	1127	5	SGCE	7	94257530	Missense_Mutation	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09	28551947	94257530	64881133	35	24635										
SPAM1	0	genome.wustl.edu	37	chr7	123599693	123599693	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tcaagtgactatcttcacctCaacccagataattttgctat	4	11	4	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	123599693	123599693	C	G	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	silent	c.1200	p.L400	0.973	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	50	0	0	41	9	18	-	-	-	G	123599693	C	G	123599693	2	3	263	1	0	0	0	0	0	0	0	1	15077	813	29	2		2	SPAM1	7	123599693	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	29342163	123599693	35538970	36	24636										
TAS2R41	0	genome.wustl.edu	37	chr7	143175315	143175315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gattgctaacatcacacactCcaccttcctgtggctgaagt	7	13	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	7	143175315	143175315	C	G	SNP	TAS2R41	ENST00000408916	human	ensembl	69_37n	1	known	missense	c.350	p.S117C	0.631	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R41	HGNC	ENSG00000221855	62	0	0	60	23	27.71	-	-	-	G	143175315	C	G	143175315	3	3	263	1	0	0	0	0	1	0	0	0	15671	855	30	2	352	2	TAS2R41	7	143175315	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	19575622	143175315	15963348	37	24637										
KIAA0146	0	genome.wustl.edu	37	chr8	48353017	48353017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aagtgtggctcccaggcctgGagctggcctgaaagttctct	13	11	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	8	48353017	48353017	G	A	SNP	KIAA0146	ENST00000297423	human	ensembl	69_37n	1	known	missense	c.1010	p.G337E	0.000	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	65	0	0	51	10	16.39	-	-	-	A	48353017	G	A	48353017	3	1	263	1	0	0	0	0	1	0	0	0	8209	1174	41	2	1040	2	KIAA0146	8	48353017	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		48353017	98011005	38	24638										
ZNF16	0	genome.wustl.edu	37	chr8	146157647	146157647	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tggatgtggcctctcttctgTagggatttcctgacatgcca	11	10	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	8	146157647	146157647	T	C	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.526	p.T176A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	53	0	0	39	12	23.53	-	-	-	C	146157647	T	C	146157647	3	2	263	1	0	0	0	0	1	0	0	0	17834	1638	57	5	1526	5	ZNF16	8	146157647	Missense_Mutation	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09	97804630	146157647	206375	39	24639										
POMT1	0	genome.wustl.edu	37	chr9	134382847	134382847	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tggcctaccagatagtgttgGagctccacttttctcattgt	9	10	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	9	134382847	134382847	G	T	SNP	POMT1	ENST00000372228	human	ensembl	69_37n	1	known	nonsense	c.373	p.E125*	1.000	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714	116	1	0.85	71	24	25.26	-	-	-	T	134382847	G	T	134382847	4	4	263	1	0	0	0	0	0	1	0	0	12319	1175	41	2	387	2	POMT1	9	134382847	Nonsense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		134382847	6830584	40	24640										
C9orf9	0	genome.wustl.edu	37	chr9	135759367	135759367	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aaagaatcccttcgcagcatCgagcagaagtacaagctctt	8	11	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	9	135759367	135759367	C	T	SNP	C9orf9	ENST00000356311	human	ensembl	69_37n	1	known	silent	c.33	p.I11	0.140	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698	60	0	0	34	4	10.53	-	-	-	T	135759367	C	T	135759367	2	4	263	1	0	0	0	0	0	0	0	1	2529	874	31	1		1	C9orf9	9	135759367	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	1376520	135759367	5454064	41	24641										
PTPN20A	0	genome.wustl.edu	37	chr10	46584514	46584514	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tcaccaggcagattcttaagTtctaaagcctttaaaaggtt	7	8	3	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	10	46584514	46584514	T	C	SNP	PTPN20A	ENST00000374339	human	ensembl	69_37n	-1	known	silent	c.501	p.E167	0.220	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN20A	HGNC	ENSG00000204179	10	0	0	11	6	35.29	-	-	-	C	46584514	T	C	46584514	2	2	263	1	0	0	0	0	0	0	0	1	12867	1722	60	5		5	PTPN20A	10	46584514	Silent	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09		46584514	88950233	42	24642										
DDIT4	0	genome.wustl.edu	37	chr10	74033832	74033832	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctagctggtgagtgtcccttCtgtgtgtgggtcctagagct	14	9	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	10	74033832	74033832	C	T	SNP	DDIT4	ENST00000473155	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDIT4	HGNC	ENSG00000168209	31	0	0	13	7	33.33	-	-	-	T	74033832	C	T	74033832	1	4	263	0	1	0	0	0	0	0	0	0	4362	928	32	2		2	DDIT4	10	74033832	RNA	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	27449318	74033832	61500915	43	24643										
C10orf90	0	genome.wustl.edu	37	chr10	128209867	128209867	+	Splice_Site	DEL	C	C	-													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tggaaaaaaattagaacataCcttctccagacagtttgagc							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	10	128209867	128209867	C	-	DEL	C10orf90	ENST00000284694	human	ensembl	69_37n	-1	known	splice_site_del	c.22+1	e1+1	0.998	-	-	-	no_errors	C10orf90	HGNC	ENSG00000154493	49	0	0	38	7	15.56	-	-	-	-	128209867	C	-	128209867	8	5	263	1	0	1	0	1	0	0	1	0	1633	521	18	0	2112	0	C10orf90	10	128209867	Splice_Site	DEL	C	TCGA-AC-A3W7-01A-11D-A228-09	54176035	128209867	7324880	44	24644										
CARS	0	genome.wustl.edu	37	chr11	3059366	3059366	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ggcaagctgcactgcgtgctGaatccgttcgagcatctgct	12	12	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	11	3059366	3059366	G	A	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	nonsense	c.715	p.Q239*	0.004	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	76	0	0	61	7	10.29	-	-	-	A	3059366	G	A	3059366	4	1	263	1	0	0	0	0	0	1	0	0	2682	1299	45	2	1856	2	CARS	11	3059366	Nonsense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		3059366	131947150	45	24645										
OR8K5	0	genome.wustl.edu	37	chr11	55927147	55927147	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	acaaaatcaacatgtaggacActaagactatcagaaaggag	8	7	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	11	55927147	55927147	A	T	SNP	OR8K5	ENST00000313447	human	ensembl	69_37n	-1	known	missense	c.647	p.V216E	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752	41	0	0	34	15	30.61	-	-	-	T	55927147	A	T	55927147	3	4	263	1	0	0	0	0	1	0	0	0	11318	159	6	5	279	5	OR8K5	11	55927147	Missense_Mutation	SNP	A	TCGA-AC-A3W7-01A-11D-A228-09	52867781	55927147	79079369	46	24646										
ZNF202	0	genome.wustl.edu	37	chr11	123597676	123597676	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	atcttcctgctccagacactCttcctcatctttactcctat	2	16	4	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	11	123597676	123597676	C	T	SNP	ZNF202	ENST00000336139	human	ensembl	69_37n	-1	known	missense	c.976	p.E326K	0.295	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261	37	0	0	23	6	20.69	-	-	-	T	123597676	C	T	123597676	3	4	263	1	0	0	0	0	1	0	0	0	17859	922	32	2	974	2	ZNF202	11	123597676	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	67670529	123597676	11408840	47	24647										
NTM	0	genome.wustl.edu	37	chr11	131781424	131781424	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cctggaagtgcctcgtggtcGtgtctctcaggctgctgttc	13	12	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	11	131781424	131781424	G	C	SNP	NTM	ENST00000374786	human	ensembl	69_37n	1	known	missense	c.49	p.V17L	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NTM	HGNC	ENSG00000182667	105	0	0	137	57	29.38	-	-	-	C	131781424	G	C	131781424	3	2	263	1	0	0	0	0	1	0	0	0	10772	1145	40	3	137	3	NTM	11	131781424	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	8183748	131781424	3225092	48	24648										
PRB2	0	genome.wustl.edu	37	chr12	11546686	11546686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctggaggagatcggggacttCgggacttgtctccttgtggg	17	8	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	12	11546686	11546686	C	T	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.326	p.R109Q	0.000	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	85	0	0	142	17	10.69	-	-	-	T	11546686	C	T	11546686	3	4	263	1	0	0	0	0	1	0	0	0	12524	884	31	1	928	1	PRB2	12	11546686	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09		11546686	122305209	49	24649										
SLC5A8	0	genome.wustl.edu	37	chr12	101581287	101581287	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agtcccacaagattgatgtaGagagacctaaagaagtgaaa	10	6	0	6			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	12	101581287	101581287	G	C	SNP	SLC5A8	ENST00000536262	human	ensembl	69_37n	-1	known	silent	c.840	p.L280	0.987	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870	32	0	0	12	5	29.41	-	-	-	C	101581287	G	C	101581287	2	2	263	1	0	0	0	0	0	0	0	1	14760	929	33	2		2	SLC5A8	12	101581287	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	90034601	101581287	32270608	50	24650										
PRKAB1	0	genome.wustl.edu	37	chr12	120118061	120118061	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cttgttccttaggatggagtGatggtgctcagcgcaaccca	12	10	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	12	120118061	120118061	G	A	SNP	PRKAB1	ENST00000229328	human	ensembl	69_37n	1	known	silent	c.744	p.V248	1.000	pfam_AMP_prot_kin_bsu_interact-dom	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725	79	0	0	17	7	29.17	-	-	-	A	120118061	G	A	120118061	2	1	263	1	0	0	0	0	0	0	0	1	12576	1277	45	2		2	PRKAB1	12	120118061	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	18536774	120118061	13733834	51	24651										
KNTC1	0	genome.wustl.edu	37	chr12	123022922	123022922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agttggcctttgtcaagaagGaaagtttcttttggttggcg	13	5	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	12	123022922	123022922	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.287	p.G96E	1.000	superfamily_WD40_repeat_dom	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	49	0	0	14	11	44	-	-	-	A	123022922	G	A	123022922	3	1	263	1	0	0	0	0	1	0	0	0	8481	1174	41	2	297	2	KNTC1	12	123022922	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	2904861	123022922	10828973	52	24652										
SPATA13	0	genome.wustl.edu	37	chr13	24797937	24797937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cgggtaccacagaggaccctGagcagttcctccactgactc	10	15	0	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	13	24797937	24797937	G	A	SNP	SPATA13	ENST00000382141	human	ensembl	69_37n	1	known	missense	c.982	p.E328K	0.099	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA13	HGNC	ENSG00000182957	48	0	0	43	13	23.21	-	-	-	A	24797937	G	A	24797937	3	1	263	1	0	0	0	0	1	0	0	0	15091	1277	45	2	872	2	SPATA13	13	24797937	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		24797937	90371941	53	24653										
ADSSL1	0	genome.wustl.edu	37	chr14	105207543	105207543	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ccccccaagaagatcctggtGgagggtgccaacgccgccct	12	16	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	14	105207543	105207543	G	A	SNP	ADSSL1	ENST00000332972	human	ensembl	69_37n	1	known	silent	c.885	p.V295	1.000	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100	82	0	0	62	12	16.22	-	-	-	A	105207543	G	A	105207543	2	1	263	1	0	0	0	0	0	0	0	1	348	1335	47	4		4	ADSSL1	14	105207543	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		105207543	2141997	54	24654										
ZNF770	0	genome.wustl.edu	37	chr15	35273613	35273613	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ttgtggtcgttctttaaagtGagtaagctgatgtctcttcc	10	7	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	15	35273613	35273613	G	A	SNP	ZNF770	ENST00000356321	human	ensembl	69_37n	-1	known	missense	c.2023	p.H675Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146	101	0	0	53	19	26.39	-	-	-	A	35273613	G	A	35273613	3	1	263	1	0	0	0	0	1	0	0	0	18237	1290	45	2	56	2	ZNF770	15	35273613	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		35273613	67257779	55	24655										
SNUPN	0	genome.wustl.edu	37	chr15	75913265	75913265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gttccagtaacctccggcggCgctcactctgctccaaggaa	10	15	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	15	75913265	75913265	C	T	SNP	SNUPN	ENST00000371091	human	ensembl	69_37n	-1	known	missense	c.254	p.R85H	1.000	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371	53	0	0	49	8	14.04	-	-	-	T	75913265	C	T	75913265	3	4	263	1	0	0	0	0	1	0	0	0	14966	768	27	1	986	1	SNUPN	15	75913265	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	40639652	75913265	26618127	56	24656										
PDXDC1	0	genome.wustl.edu	37	chr16	15126771	15126771	+	Frame_Shift_Del	DEL	A	A	-													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gaaatcagatcccgaaggggAaaacatccatgctggactcc							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	16	15126771	15126771	A	-	DEL	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	frame_shift_del	c.1625	p.N543fs	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	77	0	0	46	9	16.07	-	-	-	-	15126771	A	-	15126771	7	5	263	1	0	1	0	1	0	0	0	0	11769	246	9	0	1695	0	PDXDC1	16	15126771	Frame_Shift_Del	DEL	A	TCGA-AC-A3W7-01A-11D-A228-09		15126771	75227982	57	24657										
SMG1	0	genome.wustl.edu	37	chr16	18826809	18826809	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	aaggtgggagtgatttcctgGagcatttcaacgtgttcttg	13	6	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	16	18826809	18826809	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.10470	p.L3490	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	61	0	0	31	13	29.55	-	-	-	C	18826809	G	C	18826809	2	2	263	1	0	0	0	0	0	0	0	1	14884	1161	41	2		2	SMG1	16	18826809	Silent	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	3700038	18826809	71527944	58	24658										
TK2	0	genome.wustl.edu	37	chr16	66547661	66547661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ggggctgccatggggaaaagGctgcctttgatgagccactc	15	10	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	16	66547661	66547661	G	T	SNP	TK2	ENST00000299697	human	ensembl	69_37n	-1	known	missense	c.798	p.S266R	0.002	pfam_Deoxynucleoside_kinase	pfam_Deoxynucleoside_kinase	-	no_errors	TK2	HGNC	ENSG00000166548	41	0	0	25	5	16.67	-	-	-	T	66547661	G	T	66547661	3	4	263	1	0	0	0	0	1	0	0	0	16028	1194	42	4	133	4	TK2	16	66547661	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	47720852	66547661	23807092	59	24659										
CDH1	0	genome.wustl.edu	37	chr16	68842658	68842659	+	Frame_Shift_Ins	INS	-	-	A													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tcactggccaaggagctgacINSacaccccctgttggtgtctt							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	16	68842658	68842659	-	A	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.594_595	p.T198fs	0.121:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	55	0	0	9	6	40	-	-	-	A	68842659	-	A	68842658	7	5	263	1	0	1	1	0	0	0	0	0	3124	477	17	0	612	0	CDH1	16	68842658	Frame_Shift_Ins	INS	-	TCGA-AC-A3W7-01A-11D-A228-09	2294997	68842658	21512095	60	24660										
CNTNAP4	0	genome.wustl.edu	37	chr16	76592633	76592633	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agtttgttttaatagccaggGgttctcaatggaaaaacgaa	10	5	1	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	16	76592633	76592633	G	A	SNP	CNTNAP4	ENST00000469589	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	36	0	0	22	3	12	-	-	-	A	76592633	G	A	76592633	1	1	263	0	1	0	0	0	0	0	0	0	3679	1247	43	4		4	CNTNAP4	16	76592633	RNA	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	7749975	76592633	13762120	61	24661										
C17orf104	0	genome.wustl.edu	37	chr17	42751400	42751400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gtgtggctactcggaaaacaCgcactgccctgtggtgtgca	13	11	0	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	17	42751400	42751400	C	A	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.2695	p.R899S	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	76	0	0	37	31	45.59	-	-	-	A	42751400	C	A	42751400	3	1	263	1	0	0	0	0	1	0	0	0	1864	536	19	3	2725	3	C17orf104	17	42751400	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09		42751400	38443810	62	24662										
ABCA9	0	genome.wustl.edu	37	chr17	67023189	67023189	+	Frame_Shift_Del	DEL	G	G	-													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	gtctgatttcccctctttcaGgagattccatattcggtgcc							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	17	67023189	67023189	G	-	DEL	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	frame_shift_del	c.1978	p.L660fs	0.990	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	39	0	0	32	6	15.79	-	-	-	-	67023189	G	-	67023189	7	5	263	1	0	1	0	1	0	0	0	0	39	991	35	0	2996	0	ABCA9	17	67023189	Frame_Shift_Del	DEL	G	TCGA-AC-A3W7-01A-11D-A228-09	24271789	67023189	14172021	63	24663										
SLC39A3	0	genome.wustl.edu	37	chr19	2737421	2737421	+	RNA	DEL	T	T	-													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ttagctttctttcttttttcTttttttttttttagacagag							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	2737421	2737421	T	-	DEL	SLC39A3	ENST00000590875	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	SLC39A3	HGNC	ENSG00000141873	14	0	0	17	7	29.17	-	-	-	-	2737421	T	-	2737421	6	5	263	0	1	1	0	1	0	0	0	0	14708	1624	56	0		0	SLC39A3	19	2737421	RNA	DEL	T	TCGA-AC-A3W7-01A-11D-A228-09		2737421	56391562	64	24664										
JUNB	0	genome.wustl.edu	37	chr19	12902831	12902831	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	accggcgcgtctctcaagctCgcctcttcggagctggaacg	12	15	3	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	12902831	12902831	C	T	SNP	JUNB	ENST00000302754	human	ensembl	69_37n	1	known	silent	c.246	p.L82	0.979	pfam_JNK	pfam_JNK,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223	75	0	0	58	13	18.31	-	-	-	T	12902831	C	T	12902831	2	4	263	1	0	0	0	0	0	0	0	1	8024	871	31	1		1	JUNB	19	12902831	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	10165410	12902831	46226152	65	24665										
SLC35E1	0	genome.wustl.edu	37	chr19	16683056	16683056	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	accacgttgccgcccgcgctCagcgcgtaccacagcaggca	11	18	1	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	16683056	16683056	C	T	SNP	SLC35E1	ENST00000409648	human	ensembl	69_37n	-1	known	silent	c.120	p.L40	1.000	NULL	pfam_DUF250,pfam_DMT,pfam_UAA	-	no_errors	SLC35E1	HGNC	ENSG00000127526	33	0	0	71	19	21.11	-	-	-	T	16683056	C	T	16683056	2	4	263	1	0	0	0	0	0	0	0	1	14673	813	29	2		2	SLC35E1	19	16683056	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	3780225	16683056	42445927	66	24666										
SLC35E1	0	genome.wustl.edu	37	chr19	16683100	16683100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cgccgccacccgcgcgccctCgcgcgccccaccactgctgc	10	25	0	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	16683100	16683100	C	T	SNP	SLC35E1	ENST00000409648	human	ensembl	69_37n	-1	known	missense	c.76	p.E26K	1.000	NULL	pfam_DUF250,pfam_DMT,pfam_UAA	-	no_errors	SLC35E1	HGNC	ENSG00000127526	16	0	0	35	14	28.57	-	-	-	T	16683100	C	T	16683100	3	4	263	1	0	0	0	0	1	0	0	0	14673	893	31	1	1180	1	SLC35E1	19	16683100	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	44	16683100	42445883	67	24667										
KIAA0355	0	genome.wustl.edu	37	chr19	34832781	34832781	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	caactgatcaggaaatgcaaGaggtgatagattttctctcg	10	7	2	4			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	34832781	34832781	G	A	SNP	KIAA0355	ENST00000299505	human	ensembl	69_37n	1	known	missense	c.1942	p.E648K	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398	98	0	0	44	15	25.42	-	-	-	A	34832781	G	A	34832781	3	1	263	1	0	0	0	0	1	0	0	0	8222	943	33	2	1976	2	KIAA0355	19	34832781	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	18149681	34832781	24296202	68	24668										
FXYD5	0	genome.wustl.edu	37	chr19	35650472	35650473	+	Frame_Shift_Ins	INS	-	-	T													0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cttgatgaacatgttggctgINStttccagctttttctgtcta							TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	35650472	35650473	-	T	INS	FXYD5	ENST00000392218	human	ensembl	69_37n	1	novel	frame_shift_ins	c.253_254	p.S86fs	0.001:0.001	NULL	NULL	-	no_errors	FXYD5	HGNC	ENSG00000089327	83	0	0	46	16	25.81	-	-	-	T	35650473	-	T	35650472	7	5	263	1	0	1	1	0	0	0	0	0	6170	1392	48	0		0	FXYD5	19	35650472	Frame_Shift_Ins	INS	-	TCGA-AC-A3W7-01A-11D-A228-09	817691	35650472	23478511	69	24669										
DHDH	0	genome.wustl.edu	37	chr19	49439288	49439288	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	cttgacctactcccaccctaGaggtggcctacattggcacc	8	16	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	49439288	49439288	G	C	SNP	DHDH	ENST00000221403	human	ensembl	69_37n	1	known	splice_site	c.203-1	e3-1	1.000	-	-	-	no_errors	DHDH	HGNC	ENSG00000104808	105	0	0	106	30	22.06	-	-	-	C	49439288	G	C	49439288	5	2	263	1	0	0	0	0	0	0	1	0	4515	956	33	2	212	2	DHDH	19	49439288	Splice_Site	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	13788816	49439288	9689695	70	24670										
ALDH16A1	0	genome.wustl.edu	37	chr19	49973687	49973687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agagctggggctgcgagtggCgcggaccaaggccctgtggc	19	11	0	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	49973687	49973687	C	T	SNP	ALDH16A1	ENST00000293350	human	ensembl	69_37n	1	known	missense	c.2372	p.A791V	0.993	pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618	50	0	0	80	19	19.19	-	-	-	T	49973687	C	T	49973687	3	4	263	1	0	0	0	0	1	0	0	0	488	768	27	1	2438	1	ALDH16A1	19	49973687	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	534399	49973687	9155296	71	24671										
IL4I1	0	genome.wustl.edu	37	chr19	50397597	50397597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ggacgcaaggcgtagcccagCttctcgggcaccttctccac	11	16	2	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	50397597	50397597	C	T	SNP	IL4I1	ENST00000341114	human	ensembl	69_37n	-1	known	silent	c.561	p.K187	0.948	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951	88	0	0	30	13	30.23	-	-	-	T	50397597	C	T	50397597	2	4	263	1	0	0	0	0	0	0	0	1	7751	796	28	4		4	IL4I1	19	50397597	Silent	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	423910	50397597	8731386	72	24672										
LILRB1	0	genome.wustl.edu	37	chr19	55144014	55144014	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ctctgatgctggctacaacaGatttgttctgtataaggacg	10	8	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	55144014	55144014	G	A	SNP	LILRB1	ENST00000324602	human	ensembl	69_37n	1	known	missense	c.761	p.R254K	0.006	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB1	HGNC	ENSG00000104972	120	0	0	123	44	26.35	-	-	-	A	55144014	G	A	55144014	3	1	263	1	0	0	0	0	1	0	0	0	8845	942	33	2	779	2	LILRB1	19	55144014	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	4746417	55144014	3984969	73	24673										
ZNF544	0	genome.wustl.edu	37	chr19	58772398	58772398	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	caggagaactccttgaggttCatggtactcacctcagagag	11	10	3	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	58772398	58772398	C	G	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.426	p.F142L	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	65	0	0	23	10	30.3	-	-	-	G	58772398	C	G	58772398	3	3	263	1	0	0	0	0	1	0	0	0	18073	825	29	2	440	2	ZNF544	19	58772398	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	3628384	58772398	356585	74	24674			2	55		3	3	1166	C		4.747592e-06
ZNF544	0	genome.wustl.edu	37	chr19	58772895	58772895	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tgagtgcagggaaacctgttCtgagagtctgtgccttgtac	13	8	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	58772895	58772895	C	A	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.923	p.S308Y	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	44	0	0	31	11	26.19	-	-	-	A	58772895	C	A	58772895	3	1	263	1	0	0	0	0	1	0	0	0	18073	913	32	2	937	2	ZNF544	19	58772895	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	497	58772895	356088	75	24675			2	55		3	3	1166	C		4.747592e-06
ZNF544	0	genome.wustl.edu	37	chr19	58773563	58773563	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tgtgtgggaaatccttctccCagagttccaaacttattacg	8	10	1	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	19	58773563	58773563	C	T	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	nonsense	c.1591	p.Q531*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	32	0	0	26	9	25.71	-	-	-	T	58773563	C	T	58773563	4	4	263	1	0	0	0	0	0	1	0	0	18073	595	21	4	1605	4	ZNF544	19	58773563	Nonsense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09	668	58773563	355420	76	24676			2	55		3	3	1166	C		4.747592e-06
RSPH1	0	genome.wustl.edu	37	chr21	43916278	43916278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tccctcctcctccaactcctCcgagcccaggtccgacatgg	7	20	0	0			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	21	43916278	43916278	C	G	SNP	RSPH1	ENST00000291536	human	ensembl	69_37n	-1	known	missense	c.19	p.E7Q	1.000	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188	45	0	0	45	7	13.46	-	-	-	G	43916278	C	G	43916278	3	3	263	1	0	0	0	0	1	0	0	0	13788	864	30	2	946	2	RSPH1	21	43916278	Missense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09		43916278	4213617	77	24677										
SGSM1	0	genome.wustl.edu	37	chr22	25270489	25270489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	tggccagagggagtcagtggGagccagccagatgggacact	17	9	1	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	22	25270489	25270489	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.1399	p.E467K	0.907	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	79	0	0	30	14	31.82	-	-	-	A	25270489	G	A	25270489	3	1	263	1	0	0	0	0	1	0	0	0	14310	1175	41	2	1449	2	SGSM1	22	25270489	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09		25270489	26034077	78	24678										
CELSR1	0	genome.wustl.edu	37	chr22	46930419	46930419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ggtgcattgtcattggcatcGaggatgaggatctctagggt	15	6	2	1			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	22	46930419	46930419	G	C	SNP	CELSR1	ENST00000454637	human	ensembl	69_37n	-1	putative	missense	c.773	p.S258W	0.064	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_EGF-like_dom,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,pfscan_EG-like_dom,pfscan_Cadherin,prints_Cadherin	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CELSR1	HGNC	ENSG00000075275	223	0	0	111	15	11.9	-	-	-	C	46930419	G	C	46930419	3	2	263	1	0	0	0	0	1	0	0	0	3250	1045	37	3	6535	3	CELSR1	22	46930419	Missense_Mutation	SNP	G	TCGA-AC-A3W7-01A-11D-A228-09	21659930	46930419	4374147	79	24679										
CCNB3	0	genome.wustl.edu	37	chrX	50053142	50053142	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	agtgtccctctcaaaagagtCattggccatccaagagaagg	10	10	2	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	X	50053142	50053142	C	G	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	nonsense	c.1973	p.S658*	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	42	0	0	33	7	17.5	-	-	-	G	50053142	C	G	50053142	4	3	263	1	0	0	0	0	0	1	0	0	2943	838	29	2	1987	2	CCNB3	23	50053142	Nonsense_Mutation	SNP	C	TCGA-AC-A3W7-01A-11D-A228-09		50053142	105217418	80	24680										
DGKK	0	genome.wustl.edu	37	chrX	50129373	50129373	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	taccttgttcaacttgaaatAtgatgagtttcaaggatttc	7	6	2	3			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	X	50129373	50129373	A	G	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	131	0	0	54	30	35.71	-	-	-	G	50129373	A	G	50129373	1	3	263	0	1	0	0	0	0	0	0	0	4508	449	16	5		5	DGKK	23	50129373	RNA	SNP	A	TCGA-AC-A3W7-01A-11D-A228-09	76231	50129373	105141187	81	24681										
SPANXN2	0	genome.wustl.edu	37	chrX	142795497	142795497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.292682926829268	24	1.15133593988664e-05	2.81658595641647	3.53878748370274	2.59824595979503	0.0129393157240143	0.164346114001117	15	ttgatttgaatttattttcgTatgcttcctgtagtaataca	6	5	0	2			TCGA-AC-A3W7-01A-11D-A228-09	TCGA-AC-A3W7-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d98bbae-0506-4428-99b1-c17109be2443	cfa4574d-c002-40e3-a7b5-f57a056ca98b	X	142795497	142795497	T	C	SNP	SPANXN2	ENST00000370498	human	ensembl	69_37n	-1	known	missense	c.181	p.T61A	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924	160	0	0	78	71	47.65	-	-	-	C	142795497	T	C	142795497	3	2	263	1	0	0	0	0	1	0	0	0	15082	1638	57	5	365	5	SPANXN2	23	142795497	Missense_Mutation	SNP	T	TCGA-AC-A3W7-01A-11D-A228-09	92666124	142795497	12475063	82	24682										
PLEKHH2	0	genome.wustl.edu	37	chr2	43927380	43927380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	ctcactctctggaaaaggaaCacaattagtgccttcatcac	6	12	4	0			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	2	43927380	43927380	C	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.1283	p.T428K	0.003	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	44	0	0	44	6	12	-	-	-	A	43927380	C	A	43927380	3	1	264	1	0	0	0	0	1	0	0	0	12151	478	17	4	1309	4	PLEKHH2	2	43927380	Missense_Mutation	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09		43927380	199271993	1	24683										
UBA6	0	genome.wustl.edu	37	chr4	68500227	68500227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	aaatggtatttcctcttctgGgggatcccgctaatttataa	8	8	2	0			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	68500227	68500227	G	T	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.1852	p.P618T	1.000	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	41	0	0	35	4	10.26	-	-	-	T	68500227	G	T	68500227	3	4	264	1	0	0	0	0	1	0	0	0	16929	1232	43	4	1358	4	UBA6	4	68500227	Missense_Mutation	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09		68500227	122654049	2	24684										
AFF1	0	genome.wustl.edu	37	chr4	88029432	88029432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	agagcagttcaagtgacagcGaagaaaatgagcccctagaa	11	8	1	5			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	88029432	88029432	G	A	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.1498	p.E500K	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	23	0	0	24	4	14.29	-	-	-	A	88029432	G	A	88029432	3	1	264	1	0	0	0	0	1	0	0	0	356	1059	37	1	1557	1	AFF1	4	88029432	Missense_Mutation	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09	19529205	88029432	103124844	3	24685										
LARP1B	0	genome.wustl.edu	37	chr4	129143606	129143606	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	tcctgggctcagtgacactcCagtcgccgccccaccccaca	8	20	1	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	129143606	129143606	C	T	SNP	LARP1B	ENST00000503725	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LARP1B	HGNC	ENSG00000138709	50	0	0	70	10	12.5	-	-	-	T	129143606	C	T	129143606	1	4	264	0	1	0	0	0	0	0	0	0	8683	609	21	4		4	LARP1B	4	129143606	RNA	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09	41114174	129143606	62010670	4	24686										
EXOC4	0	genome.wustl.edu	37	chr7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	cagcaaaagcaaagacccctCggggctgctcatctctgtga	10	13	2	2			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	7	132937919	132937919	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.62	p.S21L	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	24	0	0	25	6	19.35	-	-	-	T	132937919	C	T	132937919	3	4	264	1	0	0	0	0	1	0	0	0	5342	893	31	1	64	1	EXOC4	7	132937919	Missense_Mutation	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09		132937919	26200744	5	24687										
XKR5	0	genome.wustl.edu	37	chr8	6686791	6686791	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	aggatgagataggccttcttCtgtcatctcatgctgcattt	9	9	4	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	8	6686791	6686791	C	T	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	38	0	0	33	4	10.81	-	-	-	T	6686791	C	T	6686791	1	4	264	0	1	0	0	0	0	0	0	0	17531	928	32	2		2	XKR5	8	6686791	RNA	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09		6686791	139677231	6	24688										
RGS22	0	genome.wustl.edu	37	chr8	101117734	101117734	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	cctacgttatacacaggcaaAcgtagcacatttctggccct	7	13	1	0			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	8	101117734	101117734	A	G	SNP	RGS22	ENST00000522064	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RGS22	HGNC	ENSG00000132554	28	0	0	34	4	10.53	-	-	-	G	101117734	A	G	101117734	1	3	264	0	1	0	0	0	0	0	0	0	13389	58	2	5		5	RGS22	8	101117734	RNA	SNP	A	TCGA-AC-A3YI-01A-21D-A23C-09	94430943	101117734	45246288	7	24689										
AGAP4	0	genome.wustl.edu	37	chr10	46342649	46342649	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	acagtcacctcagcaggctgTacagcagcagccatgggcgc	12	14	2	0			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	10	46342649	46342649	T	C	SNP	AGAP4	ENST00000448048	human	ensembl	69_37n	-1	known	silent	c.147	p.V49	0.177	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP4	HGNC	ENSG00000188234	12	0	0	10	9	47.37	-	-	-	C	46342649	T	C	46342649	2	2	264	1	0	0	0	0	0	0	0	1	370	1625	57	5		5	AGAP4	10	46342649	Silent	SNP	T	TCGA-AC-A3YI-01A-21D-A23C-09		46342649	89192098	8	24690										
RPP30	0	genome.wustl.edu	37	chr10	92655664	92655664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	aaataagagggccatatgacGtggcaaatctgtatcctttt	9	7	1	2			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	10	92655664	92655664	G	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	1	known	missense	c.607	p.V203L	0.959	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	45	0	0	57	7	10.94	-	-	-	T	92655664	G	T	92655664	3	4	264	1	0	0	0	0	1	0	0	0	13698	1145	40	3	641	3	RPP30	10	92655664	Missense_Mutation	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09	46313015	92655664	42879083	9	24691										
NAP1L4	0	genome.wustl.edu	37	chr11	2970465	2970465	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	attccaccttacctagaaacGtatgaatgattaacagacaa	5	9	0	4			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	11	2970465	2970465	G	T	SNP	NAP1L4	ENST00000469089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NAP1L4	HGNC	ENSG00000205531	35	0	0	35	4	10.26	-	-	-	T	2970465	G	T	2970465	1	4	264	0	1	0	0	0	0	0	0	0	10231	1160	40	3		3	NAP1L4	11	2970465	RNA	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09		2970465	132036051	10	24692										
C1QTNF5	0	genome.wustl.edu	37	chr11	119210295	119210295	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	aaactgcaggctggcccggtAgacggtggcatggacggcga	17	10	0	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	11	119210295	119210295	A	G	SNP	C1QTNF5	ENST00000445041	human	ensembl	69_37n	-1	known	missense	c.478	p.Y160H	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953	114	0	0	111	22	16.54	-	-	-	G	119210295	A	G	119210295	3	3	264	1	0	0	0	0	1	0	0	0	1985	420	15	5	257	5	C1QTNF5	11	119210295	Missense_Mutation	SNP	A	TCGA-AC-A3YI-01A-21D-A23C-09	116239830	119210295	15796221	11	24693										
EP400	0	genome.wustl.edu	37	chr12	132547141	132547141	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	cagcagcagcagcagcaacaGcagcagcagcaacagacgac	11	14	0	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	12	132547141	132547141	G	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	silent	c.8337	p.Q2779	0.737	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	42	0	0	38	5	11.63	-	-	-	A	132547141	G	A	132547141	2	1	264	1	0	0	0	0	0	0	0	1	5186	962	34	4		4	EP400	12	132547141	Silent	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09		132547141	1304754	12	24694										
IL32	0	genome.wustl.edu	37	chr16	3131810	3131810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	cagacctggtggcacggggtTctggcctgggtgaaggagaa	18	8	1	3			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	16	3131810	3131810	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	1	putative	silent	c.516	p.V172	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	25	0	0	22	7	24.14	-	-	-	C	3131810	T	C	3131810	2	2	264	1	0	0	0	0	0	0	0	1	7746	1798	62	5		5	IL32	16	3131810	Silent	SNP	T	TCGA-AC-A3YI-01A-21D-A23C-09		3131810	87222943	13	24695										
CDH1	0	genome.wustl.edu	37	chr16	68862200	68862201	+	Frame_Shift_Ins	INS	-	-	G													0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	gaagaaggaggcggagaagaINSggaccaggtgggttttgaaa							TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	16	68862200	68862201	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2288_2289	p.D764fs	1.000:0.883	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	76	0	0	88	14	13.73	-	-	-	G	68862201	-	G	68862200	7	5	264	1	0	1	1	0	0	0	0	0	3124	304	11	0	2342	0	CDH1	16	68862200	Frame_Shift_Ins	INS	-	TCGA-AC-A3YI-01A-21D-A23C-09	65730390	68862200	21492553	14	24696										
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	tccagtggccatcaaagtgtTgagggaaaacacatccccca	9	12	1	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	26	0	0	42	7	14.29	-	-	-	C	37880220	T	C	37880220	3	2	264	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-AC-A3YI-01A-21D-A23C-09		37880220	43314990	15	24697										
ZNF652	0	genome.wustl.edu	37	chr17	47375975	47375975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	gaaggggtgggggatgggccGagggggaagagtgcttacag	23	4	0	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	17	47375975	47375975	G	A	SNP	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	missense	c.1621	p.R541W	0.915	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	22	0	0	13	4	23.53	-	-	-	A	47375975	G	A	47375975	3	1	264	1	0	0	0	0	1	0	0	0	18161	1057	37	1	203	1	ZNF652	17	47375975	Missense_Mutation	SNP	G	TCGA-AC-A3YI-01A-21D-A23C-09	9495755	47375975	33819235	16	24698										
MUC16	0	genome.wustl.edu	37	chr19	9058918	9058918	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	ttcaaaaacgtgaattgcctCtgtctccgtggtggctttag	10	9	3	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	19	9058918	9058918	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28528	p.E9510K	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	25	0	0	47	9	16.07	-	-	-	T	9058918	C	T	9058918	3	4	264	1	0	0	0	0	1	0	0	0	10045	922	32	2	15323	2	MUC16	19	9058918	Missense_Mutation	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09		9058918	50070065	17	24699										
LILRB5	0	genome.wustl.edu	37	chr19	54759985	54759985	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	taatagtaatagcatctgaaCctccacctgcagctgggggt	10	10	1	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	19	54759985	54759985	C	A	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	missense	c.549	p.R183S	0.001	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	58	0	0	63	7	10	-	-	-	A	54759985	C	A	54759985	3	1	264	1	0	0	0	0	1	0	0	0	8849	506	18	4	1239	4	LILRB5	19	54759985	Missense_Mutation	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09	45701067	54759985	4368998	18	24700										
OGFR	0	genome.wustl.edu	37	chr20	61444600	61444600	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.52658784799518	2.29737609329446	NA	2.29737609329446	0.333333333333333	0.930327025915261	0	catcggagaccccaggccccCgcccagcaggacctgcaggg	13	18	0	1			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	20	61444600	61444600	C	A	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	1	known	missense	c.1633	p.R545S	0.000	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	28	0	0	26	5	16.13	-	-	-	A	61444600	C	A	61444600	3	1	264	1	0	0	0	0	1	0	0	0	10916	652	23	3	1659	3	OGFR	20	61444600	Missense_Mutation	SNP	C	TCGA-AC-A3YI-01A-21D-A23C-09		61444600	1580920	19	24701										
NASP	0	genome.wustl.edu	37	chr1	46066130	46066130	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	tatctaaatagaatcatacaGtaagtactgtttctttttgt	5	5	3	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	46066130	46066130	G	T	SNP	NASP	ENST00000402363	human	ensembl	69_37n	1	known	splice_site	c.113+1	e2+1	0.896	-	-	-	no_errors	NASP	HGNC	ENSG00000132780	50	0	0	28	4	12.5	-	-	-	T	46066130	G	T	46066130	5	4	265	1	0	0	0	0	0	0	1	0	10244	1043	36	4	191	4	NASP	1	46066130	Splice_Site	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		46066130	203184491	1	24702										
VTCN1	0	genome.wustl.edu	37	chr1	117695947	117695947	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	agcctcacaccgcaaggtctCtgagctggcattatagtcca	9	13	2	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	117695947	117695947	C	T	SNP	VTCN1	ENST00000359008	human	ensembl	69_37n	-1	known	missense	c.499	p.E167K	0.993	pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VTCN1	HGNC	ENSG00000134258	57	0	0	22	12	35.29	-	-	-	T	117695947	C	T	117695947	3	4	265	1	0	0	0	0	1	0	0	0	17331	922	32	2	366	2	VTCN1	1	117695947	Missense_Mutation	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09	71629817	117695947	131554674	2	24703										
COPA	0	genome.wustl.edu	37	chr1	160280027	160280027	+	Silent	SNP	G	G	A													0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gctggattgtatgacatattGaatactggaaacttggaacc							TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	160280027	160280027	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1098	p.F366	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	43	0	0	39	14	26.42	-	-	-	A	160280027	G	A	160280027	2	1	265	1	0	0	0	0	0	0	0	1	3757	1281	45	2		2	COPA	1	160280027	Silent	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	42584080	160280027	88970594	3	24704	225	2								
COPA	0	genome.wustl.edu	37	chr1	160280035	160280035	+	Missense_Mutation	SNP	G	G	A													0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gtatgacatattgaatactgGaaacttggaaccactagaga							TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	160280035	160280035	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.1090	p.P364S	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	40	0	0	40	13	24.53	-	-	-	A	160280035	G	A	160280035	3	1	265	1	0	0	0	0	1	0	0	0	3757	1174	41	2	2699	2	COPA	1	160280035	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	8	160280035	88970586	4	24705	225	2								
USF1	0	genome.wustl.edu	37	chr1	161009775	161009775	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	caactgagctcgaagcagcaGattcttgtttttaagatctt	8	8	2	3			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	161009775	161009775	G	C	SNP	USF1	ENST00000368020	human	ensembl	69_37n	-1	known	missense	c.868	p.L290V	0.997	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	USF1	HGNC	ENSG00000158773	81	0	0	70	14	16.67	-	-	-	C	161009775	G	C	161009775	3	2	265	1	0	0	0	0	1	0	0	0	17129	933	33	2	68	2	USF1	1	161009775	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	729740	161009775	88240846	5	24706										
CFHR3	0	genome.wustl.edu	37	chr1	196748946	196748946	+	Frame_Shift_Del	DEL	T	T	-													0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ggaaaatgttattttccttaTttggaaaatggatataatca							TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	196748946	196748946	T	-	DEL	CFHR3	ENST00000367425	human	ensembl	69_37n	1	known	frame_shift_del	c.273	p.L92fs	0.002	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785	47	0	0	60	8	11.76	-	-	-	-	196748946	T	-	196748946	7	5	265	1	0	1	0	1	0	0	0	0	3315	1500	52	0	283	0	CFHR3	1	196748946	Frame_Shift_Del	DEL	T	TCGA-AC-A3YJ-01A-11D-A22X-09	35739171	196748946	52501675	6	24707										
NAV1	0	genome.wustl.edu	37	chr1	201751394	201751394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ctctgatgctggtcgggaccGcctgagtgatgctaagaagc	14	10	1	4			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	1	201751394	201751394	G	A	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.1754	p.R585H	0.994	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	99	0	0	84	11	11.46	-	-	-	A	201751394	G	A	201751394	3	1	265	1	0	0	0	0	1	0	0	0	10255	1087	38	1	1833	1	NAV1	1	201751394	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	5002448	201751394	47499227	7	24708										
USP34	0	genome.wustl.edu	37	chr2	61472411	61472411	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	aaaggttttacctcagcatcAttaaaaagatacctaaaata	4	7	2	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	61472411	61472411	A	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.6561	p.N2187K	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	56	0	0	43	9	17.31	-	-	-	T	61472411	A	T	61472411	3	4	265	1	0	0	0	0	1	0	0	0	17162	214	8	5	4199	5	USP34	2	61472411	Missense_Mutation	SNP	A	TCGA-AC-A3YJ-01A-11D-A22X-09		61472411	181726962	8	24709										
LCT	0	genome.wustl.edu	37	chr2	136570331	136570331	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gtagtctccatccacaaagaCggggtgtgcaaaccagccca	10	13	1	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	136570331	136570331	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.1903	p.V635I	0.722	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	117	0	0	52	38	42.22	-	-	-	T	136570331	C	T	136570331	3	4	265	1	0	0	0	0	1	0	0	0	8747	536	19	1	3924	1	LCT	2	136570331	Missense_Mutation	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09	75097920	136570331	106629042	9	24710										
SPEG	0	genome.wustl.edu	37	chr2	220353572	220353572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ggcgctggtgctgtggaagcCgggagacagccgggcacctt	18	11	0	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	2	220353572	220353572	C	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.8099	p.P2700L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	144	0	0	48	42	46.67	-	-	-	T	220353572	C	T	220353572	3	4	265	1	0	0	0	0	1	0	0	0	15127	652	23	1	8245	1	SPEG	2	220353572	Missense_Mutation	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09	83783241	220353572	22845801	10	24711										
CACNA2D3	0	genome.wustl.edu	37	chr3	54604012	54604012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	cagcaacttctccgaaagacGtggtcattttagttgacgtc	9	10	2	2			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	54604012	54604012	G	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.769	p.V257L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	42	0	0	34	4	10.53	-	-	-	T	54604012	G	T	54604012	3	4	265	1	0	0	0	0	1	0	0	0	2575	1145	40	3	799	3	CACNA2D3	3	54604012	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		54604012	143418418	11	24712										
PLCH1	0	genome.wustl.edu	37	chr3	155311894	155311894	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	atggtgaagcagcagctgggGtcgaagttcccctcagcttg	14	10	1	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	155311894	155311894	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	silent	c.270	p.D90	0.982	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	94	0	0	33	25	43.1	-	-	-	A	155311894	G	A	155311894	2	1	265	1	0	0	0	0	0	0	0	1	12111	1252	44	4		4	PLCH1	3	155311894	Silent	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	100707882	155311894	42710536	12	24713										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	20	0	0	19	16	45.71	-	-	-	G	178952085	A	G	178952085	3	3	265	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AC-A3YJ-01A-11D-A22X-09	23640191	178952085	19070345	13	24714										
ERCC8	0	genome.wustl.edu	37	chr5	60170337	60170337	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	catgaggaaaaatattacccAcatttagggctaatttagct	7	7	0	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	5	60170337	60170337	A	G	SNP	ERCC8	ENST00000462279	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERCC8	HGNC	ENSG00000049167	59	0	0	29	4	12.12	-	-	-	G	60170337	A	G	60170337	1	3	265	0	1	0	0	0	0	0	0	0	5256	174	6	5		5	ERCC8	5	60170337	RNA	SNP	A	TCGA-AC-A3YJ-01A-11D-A22X-09		60170337	120744923	14	24715										
DOM3Z	0	genome.wustl.edu	37	chr6	31938577	31938577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ttggtgttaacctccccagaGgggtctggggagcttccagg	15	10	1	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	6	31938577	31938577	G	A	SNP	DOM3Z	ENST00000495340	human	ensembl	69_37n	-1	novel	missense	c.38	p.P13L	0.062	NULL	pfam_RAI1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOM3Z	HGNC	ENSG00000204348	38	0	0	30	8	21.05	-	-	-	A	31938577	G	A	31938577	3	1	265	1	0	0	0	0	1	0	0	0	4740	987	35	4	588	4	DOM3Z	6	31938577	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		31938577	139176490	15	24716										
CDH23	0	genome.wustl.edu	37	chr10	73545397	73545397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ccacatcccagacagggatcGtcactgtgaaccggcccctg	10	16	1	2			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	73545397	73545397	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.5731	p.V1911I	0.655	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	37	0	0	19	7	26.92	-	-	-	A	73545397	G	A	73545397	3	1	265	1	0	0	0	0	1	0	0	0	3137	1145	40	1	6237	1	CDH23	10	73545397	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		73545397	61989350	16	24717										
PTEN	0	genome.wustl.edu	37	chr10	89692868	89692868	+	Frame_Shift_Del	DEL	C	C	-													0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ggctaagtgaagatgacaatCatgttgcagcaattcactgt							TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	89692868	89692868	C	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.352	p.H118fs	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	132	0	0	73	10	11.11	-	-	-	-	89692868	C	-	89692868	7	5	265	1	0	1	0	1	0	0	0	0	12818	826	29	0	370	0	PTEN	10	89692868	Frame_Shift_Del	DEL	C	TCGA-AC-A3YJ-01A-11D-A22X-09	16147471	89692868	45841879	17	24718										
LGI1	0	genome.wustl.edu	37	chr10	95557106	95557106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	tctgtctagtagttcccagcGtcctgtaatttatcagtgga	9	9	3	0			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	10	95557106	95557106	G	A	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.1220	p.R407H	1.000	pfam_EPTP,superfamily_WD40_repeat_dom	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	27	0	0	12	11	47.83	-	-	-	A	95557106	G	A	95557106	3	1	265	1	0	0	0	0	1	0	0	0	8806	1145	40	1	1250	1	LGI1	10	95557106	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	5864238	95557106	39977641	18	24719										
SF1	0	genome.wustl.edu	37	chr11	64533497	64533497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ggcagaggcggctggaccccGgggggcaggggcaccatagt	20	11	0	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	11	64533497	64533497	G	A	SNP	SF1	ENST00000486867	human	ensembl	69_37n	-1	putative	missense	c.871	p.R291W	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SF1	HGNC	ENSG00000168066	18	0	0	6	6	50	-	-	-	A	64533497	G	A	64533497	3	1	265	1	0	0	0	0	1	0	0	0	14233	1103	39	1	344	1	SF1	11	64533497	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		64533497	70473019	19	24720										
SLC2A3	0	genome.wustl.edu	37	chr12	8074173	8074173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	tttgaagaaggtaaaagccaAgaaggtaatgaggaagccgg	14	4	0	4			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	12	8074173	8074173	A	G	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	silent	c.1327	p.L443	0.998	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	47	0	0	42	6	12.5	-	-	-	G	8074173	A	G	8074173	2	3	265	1	0	0	0	0	0	0	0	1	14634	69	3	5		5	SLC2A3	12	8074173	Silent	SNP	A	TCGA-AC-A3YJ-01A-11D-A22X-09		8074173	125777722	20	24721										
ZFP3	0	genome.wustl.edu	37	chr17	4995115	4995115	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	caaatctggttacacatcagGgagatacaacagagggagtt	11	7	2	2			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	4995115	4995115	G	T	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	1	known	nonsense	c.316	p.G106*	0.336	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	55	0	0	29	4	12.12	-	-	-	T	4995115	G	T	4995115	4	4	265	1	0	0	0	0	0	1	0	0	17739	1233	43	4	318	4	ZFP3	17	4995115	Nonsense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		4995115	76200095	21	24722										
RABEP1	0	genome.wustl.edu	37	chr17	5266230	5266232	+	In_Frame_Del	DEL	TGG	TGG	-													0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	cataatgctggaaataaactTggtagacgttgtgatatgtg							TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	5266230	5266232	TGG	-	DEL	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	in_frame_del	c.1587_1589	p.G530in_frame_del	1.000:1.000:1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	89	0	0	52	16	23.19	-	-	-	-	5266232	TGG	-	5266230	7	5	265	1	0	1	0	1	0	0	0	0	13044	1799	63	0	1625	0	RABEP1	17	5266230	In_Frame_Del	DEL	TGG	TCGA-AC-A3YJ-01A-11D-A22X-09	271115	5266230	75928980	22	24723										
CACNA1G	0	genome.wustl.edu	37	chr17	48701409	48701409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	aggggcccctgggacacaggGgctgggggctccccaaagct	17	13	0	0			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	48701409	48701409	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.6202	p.G2068S	0.002	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	72	0	0	25	15	37.5	-	-	-	A	48701409	G	A	48701409	3	1	265	1	0	0	0	0	1	0	0	0	2569	1232	43	4	6611	4	CACNA1G	17	48701409	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09	43435179	48701409	32493801	23	24724										
USP32	0	genome.wustl.edu	37	chr17	58289418	58289418	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	tattttactactatttgctaTaaaagacatctcctcaggcc	4	10	2	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	17	58289418	58289418	T	C	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.2146	p.I716V	1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	86	0	0	48	26	35.14	-	-	-	C	58289418	T	C	58289418	3	2	265	1	0	0	0	0	1	0	0	0	17160	1406	49	5	2732	5	USP32	17	58289418	Missense_Mutation	SNP	T	TCGA-AC-A3YJ-01A-11D-A22X-09	9588009	58289418	22905792	24	24725										
ZNF229	0	genome.wustl.edu	37	chr19	44933891	44933891	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gatttatacctgaaccccttTccacagacatcacatctata	3	13	2	2			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	19	44933891	44933891	T	C	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	silent	c.1065	p.G355	0.979	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	81	0	0	25	14	35.9	-	-	-	C	44933891	T	C	44933891	2	2	265	1	0	0	0	0	0	0	0	1	17878	1770	62	5		5	ZNF229	19	44933891	Silent	SNP	T	TCGA-AC-A3YJ-01A-11D-A22X-09		44933891	14195092	25	24726										
C20orf27	0	genome.wustl.edu	37	chr20	3736174	3736174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	aggctggggacaggtgcctcGcggacatccttgctcagcct	14	13	1	0			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	20	3736174	3736174	G	A	SNP	C20orf27	ENST00000399683	human	ensembl	69_37n	-1	known	missense	c.224	p.A75V	0.038	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C20orf27	HGNC	ENSG00000101220	80	0	0	38	12	24	-	-	-	A	3736174	G	A	3736174	3	1	265	1	0	0	0	0	1	0	0	0	2127	1074	38	1	293	1	C20orf27	20	3736174	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		3736174	59289346	26	24727										
ACTR5	0	genome.wustl.edu	37	chr20	37400366	37400366	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	tccaacatctatgtccccatCcgcctgccgaagcaggcctc	7	18	1	0			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	20	37400366	37400366	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	1	known	silent	c.1731	p.I577	1.000	NULL	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	89	0	0	39	22	36.07	-	-	-	T	37400366	C	T	37400366	2	4	265	1	0	0	0	0	0	0	0	1	215	845	30	2		2	ACTR5	20	37400366	Silent	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09	33664192	37400366	25625154	27	24728										
POFUT2	0	genome.wustl.edu	37	chr21	46687385	46687385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	ctcagacgaggaggcaaacaGtatggaaatgaccactgtga	12	8	1	3			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	21	46687385	46687385	G	T	SNP	POFUT2	ENST00000331343	human	ensembl	69_37n	-1	known	missense	c.1256	p.T419N	0.003	NULL	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	45	0	0	35	4	10.26	-	-	-	T	46687385	G	T	46687385	3	4	265	1	0	0	0	0	1	0	0	0	12258	1029	36	4	180	4	POFUT2	21	46687385	Missense_Mutation	SNP	G	TCGA-AC-A3YJ-01A-11D-A22X-09		46687385	1442510	28	24729										
ATXN3L	0	genome.wustl.edu	37	chrX	13337899	13337899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gatactcttcactggtgactCctccttctgccattctcatc	5	15	4	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	X	13337899	13337899	C	T	SNP	ATXN3L	ENST00000380622	human	ensembl	69_37n	-1	known	missense	c.155	p.G52E	0.999	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3L	HGNC	ENSG00000123594	67	0	0	30	27	47.37	-	-	-	T	13337899	C	T	13337899	3	4	265	1	0	0	0	0	1	0	0	0	1218	855	30	2	916	2	ATXN3L	23	13337899	Missense_Mutation	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09		13337899	141932661	29	24730										
PHF8	0	genome.wustl.edu	37	chrX	54069225	54069225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.904872247913239	0.987793427230047	7.40845070422535	0.529175050301811	1	1	0	gtgtcaagaggggcgggaggCggcagcacgcgtcctctctg	18	11	2	1			TCGA-AC-A3YJ-01A-11D-A22X-09	TCGA-AC-A3YJ-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fecea7a-e8f4-4d95-bcd6-52cf363104e7	aee3b032-58c1-4ba5-ae5f-9008ca914a5b	X	54069225	54069225	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	silent	c.45	p.P15	0.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	142	0	0	102	31	23.13	-	-	-	T	54069225	C	T	54069225	2	4	265	1	0	0	0	0	0	0	0	1	11914	755	27	1		1	PHF8	23	54069225	Silent	SNP	C	TCGA-AC-A3YJ-01A-11D-A22X-09	40731326	54069225	101201335	30	24731										
CHD5	0	genome.wustl.edu	37	chr1	6166465	6166465	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gggcacctaccggtcacataGggccccaggggcatctggtt	14	13	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	6166465	6166465	G	C	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	silent	c.5847	p.P1949	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	26	0	0	23	13	36.11	-	-	-	C	6166465	G	C	6166465	2	2	266	1	0	0	0	0	0	0	0	1	3357	987	35	4		4	CHD5	1	6166465	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		6166465	243084156	1	24732										
TNFRSF8	0	genome.wustl.edu	37	chr1	12202521	12202521	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcctctgggcagctgcagcgAtgtcatgctctcagtggaag	14	11	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	12202521	12202521	A	T	SNP	TNFRSF8	ENST00000263932	human	ensembl	69_37n	1	known	missense	c.1721	p.D574V	0.285	prints_TNFR_8	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_8	-	no_errors	TNFRSF8	HGNC	ENSG00000120949	64	0	0	67	13	16.25	-	-	-	T	12202521	A	T	12202521	3	4	266	1	0	0	0	0	1	0	0	0	16394	333	12	5	1779	5	TNFRSF8	1	12202521	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	6036056	12202521	237048100	2	24733										
CROCC	0	genome.wustl.edu	37	chr1	17275669	17275669	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aagcctgttgccaggatgacGtgggaaaagcgtgtaaggcc	15	8	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	17275669	17275669	G	A	SNP	CROCC	ENST00000488646	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CROCC	HGNC	ENSG00000058453	9	0	0	2	4	66.67	-	-	-	A	17275669	G	A	17275669	1	1	266	0	1	0	0	0	0	0	0	0	3923	1160	40	1		1	CROCC	1	17275669	RNA	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	5073148	17275669	231974952	3	24734										
TMEM57	0	genome.wustl.edu	37	chr1	25775352	25775352	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acgtcaaatataatatgcctGctgttcatccccatacagtg	6	11	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	25775352	25775352	G	C	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	silent	c.276	p.L92	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	45	0	0	23	12	34.29	-	-	-	C	25775352	G	C	25775352	2	2	266	1	0	0	0	0	0	0	0	1	16279	1306	46	4		4	TMEM57	1	25775352	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	8499683	25775352	223475269	4	24735										
WDTC1	0	genome.wustl.edu	37	chr1	27633956	27633956	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctctcctcccctctgccccCggctcttagctccagctgct	6	22	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	27633956	27633956	C	T	SNP	WDTC1	ENST00000491239	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	WDTC1	HGNC	ENSG00000142784	31	0	0	34	7	17.07	-	-	-	T	27633956	C	T	27633956	1	4	266	0	1	0	0	0	0	0	0	0	17439	667	23	1		1	WDTC1	1	27633956	RNA	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	1858604	27633956	221616665	5	24736										
ATP6V0B	0	genome.wustl.edu	37	chr1	44441519	44441519	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcttccgctttgatgtggcaTggtaagggagggcaggggga	19	6	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	44441519	44441519	T	C	SNP	ATP6V0B	ENST00000472174	human	ensembl	69_37n	1	known	missense	c.115	p.W39R	1.000	NULL	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_V0-cplx_csu	-	no_errors	ATP6V0B	HGNC	ENSG00000117410	104	0	0	79	11	12.22	-	-	-	C	44441519	T	C	44441519	3	2	266	1	0	0	0	0	1	0	0	0	1175	1478	51	5	121	5	ATP6V0B	1	44441519	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	16807563	44441519	204809102	6	24737										
TCTEX1D1	0	genome.wustl.edu	37	chr1	67243195	67243195	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctgaggcaggctgtatgtctGtacacaaaagttttactgcc	10	9	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	67243195	67243195	G	T	SNP	TCTEX1D1	ENST00000489510	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TCTEX1D1	HGNC	ENSG00000152760	28	0	0	18	6	25	-	-	-	T	67243195	G	T	67243195	1	4	266	0	1	0	0	0	0	0	0	0	15814	1392	48	4		4	TCTEX1D1	1	67243195	RNA	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	22801676	67243195	182007426	7	24738										
CD244	0	genome.wustl.edu	37	chr1	160832438	160832438	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tacaccttgaggagcaggagGagtatgagggtgaccacttg	15	7	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	160832438	160832438	G	T	SNP	CD244	ENST00000368033	human	ensembl	69_37n	-1	known	silent	c.30	p.L10	0.007	NULL	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like	-	no_errors	CD244	HGNC	ENSG00000122223	44	0	0	58	12	17.14	-	-	-	T	160832438	G	T	160832438	2	4	266	1	0	0	0	0	0	0	0	1	3016	1161	41	2		2	CD244	1	160832438	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	93589243	160832438	88418183	8	24739										
F11R	0	genome.wustl.edu	37	chr1	160969767	160969767	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aggctgacaggggatcaaagAcctgaggaaggaaaacaaat	13	6	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	160969767	160969767	A	T	SNP	F11R	ENST00000436182	human	ensembl	69_37n	-1	known	missense	c.605	p.V202D	0.864	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	F11R	HGNC	ENSG00000158769	21	0	0	26	17	38.64	-	-	-	T	160969767	A	T	160969767	3	4	266	1	0	0	0	0	1	0	0	0	5375	289	10	5	326	5	F11R	1	160969767	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	137329	160969767	88280854	9	24740										
ARHGAP30	0	genome.wustl.edu	37	chr1	161026308	161026308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcaggtctggcttccgctctGactcaaattcctgcctgggg	12	13	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	161026308	161026308	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	missense	c.215	p.S72L	0.437	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	48	0	0	71	9	11.25	-	-	-	A	161026308	G	A	161026308	3	1	266	1	0	0	0	0	1	0	0	0	881	1294	45	2	3130	2	ARHGAP30	1	161026308	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	56541	161026308	88224313	10	24741										
FAM5B	0	genome.wustl.edu	37	chr1	177250856	177250857	+	RNA	DEL	AC	AC	-													0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcgtgcgtgcgcgcacgcatAcacacacacacacacacact							TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	177250856	177250857	AC	-	DEL	FAM5B	ENST00000478325	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	FAM5B	HGNC	ENSG00000198797	44	0	0	33	4	10.81	-	-	-	-	177250857	AC	-	177250856	6	5	266	0	1	1	0	1	0	0	0	0	5638	406	14	0		0	FAM5B	1	177250856	RNA	DEL	AC	TCGA-AC-A5EH-01A-11D-A28B-09	16224548	177250856	71999765	11	24742										
KMO	0	genome.wustl.edu	37	chr1	241731937	241731937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agtgccgttttttgggcaagGaatgaatgcggtaagttctt	13	5	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	241731937	241731937	G	A	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.947	p.G316E	1.000	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	59	0	0	42	20	32.26	-	-	-	A	241731937	G	A	241731937	3	1	266	1	0	0	0	0	1	0	0	0	8477	1174	41	2	985	2	KMO	1	241731937	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	64481081	241731937	7518684	12	24743										
OR2T1	0	genome.wustl.edu	37	chr1	248570403	248570403	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gggtgtcaggaggtgtctttTgacagtcgactccttcccat	12	10	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	1	248570403	248570403	T	G	SNP	OR2T1	ENST00000366474	human	ensembl	69_37n	1	known	nonstop	c.1108	p.*370G	0.016	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	36	0	0	30	13	30.23	-	-	-	G	248570403	T	G	248570403	4	3	266	1	0	0	0	0	0	0	0	0	11089	1826	63	5	1110	5	OR2T1	1	248570403	Nonstop_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	6838466	248570403	680218	13	24744										
VIT	0	genome.wustl.edu	37	chr2	36986166	36986166	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agctcttacatactcatcatCgaaaagtccagctgcccaag	6	13	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	36986166	36986166	C	A	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	nonsense	c.464	p.S155*	0.022	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	35	0	0	31	13	29.55	-	-	-	A	36986166	C	A	36986166	4	1	266	1	0	0	0	0	0	1	0	0	17268	893	31	3	482	3	VIT	2	36986166	Nonsense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		36986166	206213207	14	24745										
TFCP2L1	0	genome.wustl.edu	37	chr2	121995228	121995228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tggcaaagagccggcagaacTgcgagaacctgttgcggtga	15	9	0	4			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	121995228	121995228	T	C	SNP	TFCP2L1	ENST00000263707	human	ensembl	69_37n	-1	known	missense	c.974	p.Q325R	0.977	superfamily_SAM/pointed	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112	29	0	0	34	10	22.73	-	-	-	C	121995228	T	C	121995228	3	2	266	1	0	0	0	0	1	0	0	0	15891	1580	55	5	489	5	TFCP2L1	2	121995228	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	85009062	121995228	121204145	15	24746										
TMEM163	0	genome.wustl.edu	37	chr2	135260481	135260481	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aaggaccttaccacttctggGagcagcctagttgagaggtc	12	10	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	135260481	135260481	G	A	SNP	TMEM163	ENST00000281924	human	ensembl	69_37n	-1	known	silent	c.546	p.L182	0.980	NULL	NULL	-	no_errors	TMEM163	HGNC	ENSG00000152128	55	0	0	45	14	23.73	-	-	-	A	135260481	G	A	135260481	2	1	266	1	0	0	0	0	0	0	0	1	16173	1161	41	2		2	TMEM163	2	135260481	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	13265253	135260481	107938892	16	24747										
LRP2	0	genome.wustl.edu	37	chr2	170031784	170031784	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctgcgggctggtgcagttgcCgtcactgcactggaactgtc	14	12	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	170031784	170031784	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.10687	p.G3563S	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	27	0	0	26	8	23.53	-	-	-	T	170031784	C	T	170031784	3	4	266	1	0	0	0	0	1	0	0	0	9022	652	23	1	3380	1	LRP2	2	170031784	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	34771303	170031784	73167589	17	24748										
NCKAP1	0	genome.wustl.edu	37	chr2	183817883	183817883	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tggttggctctccatgactgTctaaatgttgtgtttgttga	11	6	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	183817883	183817883	T	C	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.2348	p.D783G	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	62	0	0	71	8	10.13	-	-	-	C	183817883	T	C	183817883	3	2	266	1	0	0	0	0	1	0	0	0	10293	1667	58	5	1100	5	NCKAP1	2	183817883	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	13786099	183817883	59381490	18	24749										
BMPR2	0	genome.wustl.edu	37	chr2	203421091	203421091	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctagaaggtggccgaactaaTtccaataacaacaacagcaa	7	10	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	2	203421091	203421091	T	C	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	silent	c.2703	p.N901	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	25	0	0	46	10	17.86	-	-	-	C	203421091	T	C	203421091	2	2	266	1	0	0	0	0	0	0	0	1	1476	1490	52	5		5	BMPR2	2	203421091	Silent	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	19603208	203421091	39778282	19	24750										
ATG7	0	genome.wustl.edu	37	chr3	11518615	11518615	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttgtacctgccagcatctttGagatcttcggctctggatga	10	10	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	11518615	11518615	G	C	SNP	ATG7	ENST00000427759	human	ensembl	69_37n	1	putative	silent	c.289	p.97	0.900	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG7	HGNC	ENSG00000197548	40	0	0	45	12	21.05	-	-	-	C	11518615	G	C	11518615	2	2	266	1	0	0	0	0	0	0	0	1	1105	1305	45	2		2	ATG7	3	11518615	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		11518615	186503815	20	24751										
KIF15	0	genome.wustl.edu	37	chr3	44826382	44826382	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcataacctgagaggagtaaTcccacgaagttttgaatatt	8	7	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	44826382	44826382	T	A	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	missense	c.407	p.I136N	0.998	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	34	0	0	52	16	23.53	-	-	-	A	44826382	T	A	44826382	3	1	266	1	0	0	0	0	1	0	0	0	8329	1435	50	5	429	5	KIF15	3	44826382	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	33307767	44826382	153196048	21	24752										
BSN	0	genome.wustl.edu	37	chr3	49680077	49680077	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cgcagtgcccgctgggcttgGtgccactgagcagacccagg	15	14	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	49680077	49680077	G	C	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.1010	p.G337A	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	23	0	0	29	5	14.71	-	-	-	C	49680077	G	C	49680077	3	2	266	1	0	0	0	0	1	0	0	0	1538	1261	44	4	1020	4	BSN	3	49680077	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	4853695	49680077	148342353	22	24753										
MST1R	0	genome.wustl.edu	37	chr3	49924860	49924860	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gaggtgctggggcccaagttCatgtaggttgctggcagctg	17	8	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	49924860	49924860	C	A	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.4083	p.M1361I	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	91	0	0	82	33	28.7	-	-	-	A	49924860	C	A	49924860	3	1	266	1	0	0	0	0	1	0	0	0	9963	826	29	2	123	2	MST1R	3	49924860	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	244783	49924860	148097570	23	24754										
TLR9	0	genome.wustl.edu	37	chr3	52257959	52257959	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gctcaggtttagctcttccaGggtgggcacagccaagaagg	14	10	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	52257959	52257959	G	C	SNP	TLR9	ENST00000360658	human	ensembl	69_37n	-1	known	missense	c.373	p.L125V	0.933	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732	93	0	0	119	45	27.27	-	-	-	C	52257959	G	C	52257959	3	2	266	1	0	0	0	0	1	0	0	0	16053	991	35	4	2729	4	TLR9	3	52257959	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	2333099	52257959	145764471	24	24755										
FAM19A4	0	genome.wustl.edu	37	chr3	68788321	68788321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttccaaacacggattcatgtGacaccaccatttctgaatca	5	12	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	68788321	68788321	G	A	SNP	FAM19A4	ENST00000295569	human	ensembl	69_37n	-1	known	missense	c.316	p.H106Y	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377	53	0	0	37	33	46.48	-	-	-	A	68788321	G	A	68788321	3	1	266	1	0	0	0	0	1	0	0	0	5576	1290	45	2	114	2	FAM19A4	3	68788321	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	16530362	68788321	129234109	25	24756										
ROBO1	0	genome.wustl.edu	37	chr3	78676606	78676606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acacggcagctggagaagaaGctgctccccgaacaggggga	15	11	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	78676606	78676606	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.3740	p.A1247V	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	15	0	0	19	8	29.63	-	-	-	A	78676606	G	A	78676606	3	1	266	1	0	0	0	0	1	0	0	0	13599	971	34	4	1239	4	ROBO1	3	78676606	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	9888285	78676606	119345824	26	24757										
MORC1	0	genome.wustl.edu	37	chr3	108705760	108705760	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aggaatttcctttttttcttGtttcaatgaaacatcagtgt	6	6	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	108705760	108705760	G	A	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	nonsense	c.2224	p.Q742*	0.994	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	101	0	0	82	22	21.15	-	-	-	A	108705760	G	A	108705760	4	1	266	1	0	0	0	0	0	1	0	0	9773	1386	48	4	758	4	MORC1	3	108705760	Nonsense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	30029154	108705760	89316670	27	24758										
BOC	0	genome.wustl.edu	37	chr3	113003409	113003409	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agcactgcccaggcgagcttCagcaggtagcgcattcttgg	13	12	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	113003409	113003409	C	T	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	nonsense	c.2884	p.Q962*	0.996	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	64	0	0	69	14	16.87	-	-	-	T	113003409	C	T	113003409	4	4	266	1	0	0	0	0	0	1	0	0	1486	827	29	2	2939	2	BOC	3	113003409	Nonsense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	4297649	113003409	85019021	28	24759										
PARP9	0	genome.wustl.edu	37	chr3	122274209	122274209	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttgcattgaaagaaggggtgGtttcttgtcccagctcactc	11	9	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	122274209	122274209	G	T	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	missense	c.914	p.T305N	0.001	NULL	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	50	0	0	37	9	19.57	-	-	-	T	122274209	G	T	122274209	3	4	266	1	0	0	0	0	1	0	0	0	11539	1261	44	4	1735	4	PARP9	3	122274209	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	9270800	122274209	75748221	29	24760										
ALDH1L1	0	genome.wustl.edu	37	chr3	125828949	125828949	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cttcatcttccgcacctcttCtacctgcagaaagtcctcca	4	17	4	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	125828949	125828949	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	missense	c.2185	p.E729K	0.201	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	39	0	0	50	18	26.47	-	-	-	T	125828949	C	T	125828949	3	4	266	1	0	0	0	0	1	0	0	0	494	922	32	2	539	2	ALDH1L1	3	125828949	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	3554740	125828949	72193481	30	24761										
IFT122	0	genome.wustl.edu	37	chr3	129234420	129234420	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	atcaactgccgccagcccttCatcttctccgcctcttccta	4	19	5	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	129234420	129234420	C	T	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	silent	c.3396	p.F1132	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	62	0	0	41	24	36.92	-	-	-	T	129234420	C	T	129234420	2	4	266	1	0	0	0	0	0	0	0	1	7609	825	29	2		2	IFT122	3	129234420	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	3405471	129234420	68788010	31	24762										
COL6A5	0	genome.wustl.edu	37	chr3	130188288	130188288	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aagccagattggaactatatCatcaagtttgtcaagccatt	7	8	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	130188288	130188288	C	A	SNP	COL6A5	ENST00000512836	human	ensembl	69_37n	1	putative	missense	c.2194	p.H732N	0.000	pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL6A5	HGNC	ENSG00000172752	42	0	0	32	5	13.51	-	-	-	A	130188288	C	A	130188288	3	1	266	1	0	0	0	0	1	0	0	0	3732	816	29	2	7586	2	COL6A5	3	130188288	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	953868	130188288	67834142	32	24763										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	25	0	0	18	8	30.77	-	-	-	G	178952085	A	G	178952085	3	3	266	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	48763797	178952085	19070345	33	24764										
MASP1	0	genome.wustl.edu	37	chr3	186944266	186944266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcggatcttccggatcgagtGactggtggaggcagtgtgcg	17	8	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	3	186944266	186944266	G	A	SNP	MASP1	ENST00000337774	human	ensembl	69_37n	-1	known	missense	c.1484	p.S495L	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MASP1	HGNC	ENSG00000127241	40	0	0	58	7	10.77	-	-	-	A	186944266	G	A	186944266	3	1	266	1	0	0	0	0	1	0	0	0	9393	1294	45	2	635	2	MASP1	3	186944266	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	7992181	186944266	11078164	34	24765										
MFSD7	0	genome.wustl.edu	37	chr4	680419	680419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tgacagccagttgatctgctCcatggacaggaccaagtcct	10	12	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	4	680419	680419	C	T	SNP	MFSD7	ENST00000404286	human	ensembl	69_37n	-1	known	missense	c.196	p.E66K	0.099	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026	26	0	0	33	4	10.81	-	-	-	T	680419	C	T	680419	3	4	266	1	0	0	0	0	1	0	0	0	9608	864	30	2	1519	2	MFSD7	4	680419	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		680419	190473857	35	24766										
RNF212	0	genome.wustl.edu	37	chr4	1087508	1087508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	atgtctgtgataacagacatGttttatgaactcaagcaact	7	7	2	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	4	1087508	1087508	G	C	SNP	RNF212	ENST00000333673	human	ensembl	69_37n	-1	known	missense	c.541	p.H181D	0.003	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	87	0	0	84	13	13.4	-	-	-	C	1087508	G	C	1087508	3	2	266	1	0	0	0	0	1	0	0	0	13562	1392	48	4		4	RNF212	4	1087508	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	407089	1087508	190066768	36	24767										
NOP14	0	genome.wustl.edu	37	chr4	2939875	2939875	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	attctatttcatcaggtgacGttttaacagaaacaaaaccg	6	8	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	4	2939875	2939875	G	A	SNP	NOP14	ENST00000507120	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	NOP14	HGNC	ENSG00000087269	9	0	0	5	7	58.33	-	-	-	A	2939875	G	A	2939875	1	1	266	0	1	0	0	0	0	0	0	0	10608	1160	40	1		1	NOP14	4	2939875	RNA	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	1852367	2939875	188214401	37	24768										
NUP54	0	genome.wustl.edu	37	chr4	77038820	77038820	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctcatgcaacacttacctgCttgatttctcgtaacagatc	5	13	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	4	77038820	77038820	C	A	SNP	NUP54	ENST00000264883	human	ensembl	69_37n	-1	known	missense	c.1392	p.K464N	1.000	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750	25	0	0	24	11	31.43	-	-	-	A	77038820	C	A	77038820	3	1	266	1	0	0	0	0	1	0	0	0	10840	796	28	4	139	4	NUP54	4	77038820	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	74098945	77038820	114115456	38	24769										
SH3RF1	0	genome.wustl.edu	37	chr4	170037434	170037434	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcttactttgctatccttgtCtggtttggttgctgaactgt	9	8	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	4	170037434	170037434	C	G	SNP	SH3RF1	ENST00000284637	human	ensembl	69_37n	-1	known	missense	c.2125	p.D709H	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447	53	0	0	64	14	17.95	-	-	-	G	170037434	C	G	170037434	3	3	266	1	0	0	0	0	1	0	0	0	14347	913	32	2	553	2	SH3RF1	4	170037434	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	92998614	170037434	21116842	39	24770										
ADCY2	0	genome.wustl.edu	37	chr5	7707849	7707849	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	atttcttctgtcaccctggaGcacttgaatggcgcttataa	8	10	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	7707849	7707849	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.1299	p.E433	0.980	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	49	0	0	46	6	11.54	-	-	-	A	7707849	G	A	7707849	2	1	266	1	0	0	0	0	0	0	0	1	294	962	34	4		4	ADCY2	5	7707849	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		7707849	173207411	40	24771										
HEATR7B2	0	genome.wustl.edu	37	chr5	41009484	41009484	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gaggctggcttttcagccagCgccttccacaatgtctttgt	10	12	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	41009484	41009484	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.3318	p.A1106	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	36	0	0	47	17	26.56	-	-	-	T	41009484	C	T	41009484	2	4	266	1	0	0	0	0	0	0	0	1	7086	755	27	1		1	HEATR7B2	5	41009484	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	33301635	41009484	139905776	41	24772										
MCCC2	0	genome.wustl.edu	37	chr5	70931263	70931263	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	attggcacagagtaaatactGaaagaggggagtgggggacc	16	5	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	70931263	70931263	G	A	SNP	MCCC2	ENST00000510895	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCCC2	HGNC	ENSG00000131844	13	0	0	10	11	52.38	-	-	-	A	70931263	G	A	70931263	1	1	266	0	1	0	0	0	0	0	0	0	9446	1305	45	2		2	MCCC2	5	70931263	RNA	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	29921779	70931263	109983997	42	24773										
MRPS27	0	genome.wustl.edu	37	chr5	71616174	71616174	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cgctctcgacgacaggaccgAcgctccgcctcctcgccccg	10	21	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	71616174	71616174	A	C	SNP	MRPS27	ENST00000506957	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPS27	HGNC	ENSG00000113048	41	0	0	47	7	12.96	-	-	-	C	71616174	A	C	71616174	1	2	266	0	1	0	0	0	0	0	0	0	9910	290	10	5		5	MRPS27	5	71616174	RNA	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	684911	71616174	109299086	43	24774										
HSD17B4	0	genome.wustl.edu	37	chr5	118865665	118865665	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	atctggtacttcagctaagaCaccctctgaggtaggttata	9	9	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	118865665	118865665	C	G	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.1844	p.T615R	0.000	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	27	0	0	27	9	25	-	-	-	G	118865665	C	G	118865665	3	3	266	1	0	0	0	0	1	0	0	0	7437	478	17	4	1926	4	HSD17B4	5	118865665	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	47249491	118865665	62049595	44	24775										
PCDHA5	0	genome.wustl.edu	37	chr5	140203199	140203199	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcgtatgagctgcagccagcGcctggcagtgcgcgcatccc	13	15	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	140203199	140203199	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	silent	c.1839	p.A613	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	97	0	0	116	45	27.78	-	-	-	A	140203199	G	A	140203199	2	1	266	1	0	0	0	0	0	0	0	1	11600	1074	38	1		1	PCDHA5	5	140203199	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	21337534	140203199	40712061	45	24776										
PCDHB2	0	genome.wustl.edu	37	chr5	140475626	140475626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tggaccgggagaccagatccGaatacaacatcaccatcacc	8	14	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	140475626	140475626	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.1252	p.E418K	0.733	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	58	0	0	93	12	11.43	-	-	-	A	140475626	G	A	140475626	3	1	266	1	0	0	0	0	1	0	0	0	11615	1059	37	1	1254	1	PCDHB2	5	140475626	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	272427	140475626	40439634	46	24777										
SFXN1	0	genome.wustl.edu	37	chr5	174948932	174948932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctcaacacagaggttcccatGgatgagtgcacccattcaag	9	12	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	5	174948932	174948932	G	T	SNP	SFXN1	ENST00000321442	human	ensembl	69_37n	1	known	missense	c.785	p.W262L	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN1	HGNC	ENSG00000164466	45	0	0	31	16	34.04	-	-	-	T	174948932	G	T	174948932	3	4	266	1	0	0	0	0	1	0	0	0	14282	1357	47	4	815	4	SFXN1	5	174948932	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	34473306	174948932	5966328	47	24778										
DUSP22	0	genome.wustl.edu	37	chr6	348111	348111	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttggccccgcagcctggccgGggtctccaggagcgtgacac	15	15	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	6	348111	348111	G	C	SNP	DUSP22	ENST00000344450	human	ensembl	69_37n	1	known	missense	c.272	p.G91A	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP22	HGNC	ENSG00000112679	75	0	0	80	16	16.67	-	-	-	C	348111	G	C	348111	3	2	266	1	0	0	0	0	1	0	0	0	4856	1232	43	4	294	4	DUSP22	6	348111	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		348111	170766956	48	24779										
MSH5	0	genome.wustl.edu	37	chr6	31713097	31713097	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggaggggctcagcctctttgGtaggtgtgccccatccctca	13	13	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	6	31713097	31713097	G	T	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	splice_site	c.817+1	e8+1	1.000	-	-	-	no_errors	MSH5	HGNC	ENSG00000204410	34	0	0	24	9	27.27	-	-	-	T	31713097	G	T	31713097	5	4	266	1	0	0	0	0	0	0	1	0	9945	1275	44	4	848	4	MSH5	6	31713097	Splice_Site	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	31364986	31713097	139401970	49	24780										
LAMA2	0	genome.wustl.edu	37	chr6	129794470	129794470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agatgacaaaatatattttgGtggcctgccaacgctgagaa	10	7	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	6	129794470	129794470	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.7412	p.G2471V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	38	0	0	24	5	17.24	-	-	-	T	129794470	G	T	129794470	3	4	266	1	0	0	0	0	1	0	0	0	8660	1261	44	4	7618	4	LAMA2	6	129794470	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	98081373	129794470	41320597	50	24781										
SASH1	0	genome.wustl.edu	37	chr6	148593509	148593509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cttcatggaggaacaagattGcagggtatgtaggctgtctg	14	6	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	6	148593509	148593509	G	A	SNP	SASH1	ENST00000367469	human	ensembl	69_37n	1	known	missense	c.17	p.C6Y	0.000	NULL	NULL	-	no_errors	SASH1	HGNC	ENSG00000111961	88	0	0	68	39	36.45	-	-	-	A	148593509	G	A	148593509	3	1	266	1	0	0	0	0	1	0	0	0	13935	1334	46	4		4	SASH1	6	148593509	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	18799039	148593509	22521558	51	24782										
SYNE1	0	genome.wustl.edu	37	chr6	152708494	152708494	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctctacatagtcattccattGgctaatcacagactctaaag	5	11	4	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	6	152708494	152708494	G	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.8200	p.Q2734E	0.989	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	45	0	0	42	10	19.23	-	-	-	C	152708494	G	C	152708494	3	2	266	1	0	0	0	0	1	0	0	0	15537	1357	47	4	18638	4	SYNE1	6	152708494	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	4114985	152708494	18406573	52	24783										
AMZ1	0	genome.wustl.edu	37	chr7	2740234	2740234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctggccgaggcctacaaccCgcagaggacgctcttctgca	11	16	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	2740234	2740234	C	T	SNP	AMZ1	ENST00000312371	human	ensembl	69_37n	1	known	missense	c.149	p.P50L	0.983	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945	52	0	0	38	15	28.3	-	-	-	T	2740234	C	T	2740234	3	4	266	1	0	0	0	0	1	0	0	0	596	652	23	1	151	1	AMZ1	7	2740234	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		2740234	156398429	53	24784										
CCDC146	0	genome.wustl.edu	37	chr7	76797009	76797009	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gaagacagtagcacagacacAgaaaaagaagaggaagagga	13	5	0	6			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	76797009	76797009	A	G	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	silent	c.24	p.T8	0.975	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	91	0	0	83	18	17.82	-	-	-	G	76797009	A	G	76797009	2	3	266	1	0	0	0	0	0	0	0	1	2805	175	7	5		5	CCDC146	7	76797009	Silent	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	74056775	76797009	82341654	54	24785										
ZNF394	0	genome.wustl.edu	37	chr7	99092017	99092017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agtcttccccttctatggaaCcattcttattgacatctgag	6	11	4	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	99092017	99092017	C	A	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.821	p.G274V	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	27	0	0	37	8	17.78	-	-	-	A	99092017	C	A	99092017	3	1	266	1	0	0	0	0	1	0	0	0	17976	507	18	4	868	4	ZNF394	7	99092017	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	22295008	99092017	60046646	55	24786										
CTTNBP2	0	genome.wustl.edu	37	chr7	117365286	117365286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttgaactctgggtgcgatgaCgccattccacagcttagaca	10	11	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	117365286	117365286	C	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.4081	p.V1361I	0.275	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	44	0	0	41	14	25.45	-	-	-	T	117365286	C	T	117365286	3	4	266	1	0	0	0	0	1	0	0	0	4077	536	19	1	934	1	CTTNBP2	7	117365286	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	18273269	117365286	41773377	56	24787										
GIMAP2	0	genome.wustl.edu	37	chr7	150390169	150390169	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcaaactgcctaaaaggagcCttaatcaaaacacaactgtg	7	10	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	150390169	150390169	C	A	SNP	GIMAP2	ENST00000223293	human	ensembl	69_37n	1	known	silent	c.795	p.A265	0.001	NULL	pfam_AIG1	-	no_errors	GIMAP2	HGNC	ENSG00000106560	25	0	0	28	9	24.32	-	-	-	A	150390169	C	A	150390169	2	1	266	1	0	0	0	0	0	0	0	1	6432	668	24	4		4	GIMAP2	7	150390169	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	33024883	150390169	8748494	57	24788										
MLL3	0	genome.wustl.edu	37	chr7	151845841	151845841	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tttgggcacaggatcaggttTaagggaagtgcccaatttct	12	7	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	151845841	151845841	T	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.13342	p.K4448*	0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	17	0	0	11	7	38.89	-	-	-	A	151845841	T	A	151845841	4	1	266	1	0	0	0	0	0	1	0	0	9693	1763	61	5	1596	5	MLL3	7	151845841	Nonsense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	1455672	151845841	7292822	58	24789										
MLL3	0	genome.wustl.edu	37	chr7	152132815	152132815	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gccggggctccaggctcctcGgggggtggtggcggcggctg	22	12	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	7	152132815	152132815	G	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	silent	c.57	p.P19	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	22	0	0	16	8	33.33	-	-	-	C	152132815	G	C	152132815	2	2	266	1	0	0	0	0	0	0	0	1	9693	1103	39	3		3	MLL3	7	152132815	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	286974	152132815	7005848	59	24790										
KCNU1	0	genome.wustl.edu	37	chr8	36793260	36793260	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	attgtattcaccagtctattCttaccagccgagaactaact	5	11	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	8	36793260	36793260	C	A	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.3272	p.S1091Y	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	43	0	0	19	18	47.37	-	-	-	A	36793260	C	A	36793260	3	1	266	1	0	0	0	0	1	0	0	0	8147	913	32	2	3378	2	KCNU1	8	36793260	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		36793260	109570762	60	24791										
POP1	0	genome.wustl.edu	37	chr8	99162829	99162829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctgccgggatgctgtttgcGgaagagcaagctaagaatct	13	9	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	8	99162829	99162829	G	A	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	silent	c.2019	p.A673	0.984	pfam_POPLD	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	33	0	0	28	21	42.86	-	-	-	A	99162829	G	A	99162829	2	1	266	1	0	0	0	0	0	0	0	1	12325	1103	39	1		1	POP1	8	99162829	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	62369569	99162829	47201193	61	24792										
CCIN	0	genome.wustl.edu	37	chr9	36170435	36170435	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctgtggatgaagctctcagaCatgccctatcgggcagcagc	12	12	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	36170435	36170435	C	A	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.936	p.D312E	1.000	smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	37	0	0	23	28	54.9	-	-	-	A	36170435	C	A	36170435	3	1	266	1	0	0	0	0	1	0	0	0	2905	477	17	4	938	4	CCIN	9	36170435	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		36170435	105042996	62	24793										
FRMPD1	0	genome.wustl.edu	37	chr9	37737221	37737221	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggaaacaaacaacaagcgcaCcgggtatctgcagaagaagg	12	9	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	37737221	37737221	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	silent	c.1530	p.H510	1.000	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	43	0	0	31	6	16.22	-	-	-	T	37737221	C	T	37737221	2	4	266	1	0	0	0	0	0	0	0	1	6106	506	18	4		4	FRMPD1	9	37737221	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	1566786	37737221	103476210	63	24794										
FAM75A3	0	genome.wustl.edu	37	chr9	40705594	40705594	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agccagaaggagcaaactggTgcacgaggagcccagaaaac	13	10	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	40705594	40705594	T	G	SNP	FAM75A3	ENST00000356699	human	ensembl	69_37n	1	known	missense	c.3251	p.V1084G	0.000	NULL	NULL	-	no_errors	FAM75A3	HGNC	ENSG00000147926	74	0	0	41	66	61.68	-	-	-	G	40705594	T	G	40705594	3	3	266	1	0	0	0	0	1	0	0	0	5666	1696	59	5	3265	5	FAM75A3	9	40705594	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	2968373	40705594	100507837	64	24795										
SLC44A1	0	genome.wustl.edu	37	chr9	108072014	108072014	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttctttcctagggatttattTgtggcttttcaatagcaaca	7	7	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	108072014	108072014	T	C	SNP	SLC44A1	ENST00000374720	human	ensembl	69_37n	1	known	missense	c.136	p.C46R	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	83	0	0	70	13	15.66	-	-	-	C	108072014	T	C	108072014	3	2	266	1	0	0	0	0	1	0	0	0	14724	1812	63	5	146	5	SLC44A1	9	108072014	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	67366420	108072014	33141417	65	24796										
TNC	0	genome.wustl.edu	37	chr9	117798471	117798471	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gtggcaggctcgaggtcggtCagagcatactccactgtgtt	14	10	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	117798471	117798471	C	G	SNP	TNC	ENST00000544972	human	ensembl	69_37n	-1	novel	missense	c.1249	p.D417H	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNC	HGNC	ENSG00000041982	67	0	0	37	30	44.78	-	-	-	G	117798471	C	G	117798471	3	3	266	1	0	0	0	0	1	0	0	0	16365	813	29	2	1075	2	TNC	9	117798471	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	9726457	117798471	23414960	66	24797										
DBC1	0	genome.wustl.edu	37	chr9	121971147	121971147	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcaggtcccagtcattgcccCagtgctgatggatgcttccg	12	13	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	9	121971147	121971147	C	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.995	p.W332L	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	79	0	0	55	38	40.86	-	-	-	A	121971147	C	A	121971147	3	1	266	1	0	0	0	0	1	0	0	0	4279	595	21	4	1298	4	DBC1	9	121971147	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	4172676	121971147	19242284	67	24798										
KIN	0	genome.wustl.edu	37	chr10	7816805	7816805	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcagctcaccttgacttggaAgatgttgctccggatgagct	12	10	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	10	7816805	7816805	A	C	SNP	KIN	ENST00000379562	human	ensembl	69_37n	-1	known	silent	c.657	p.S219	0.102	NULL	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657	25	0	0	20	6	23.08	-	-	-	C	7816805	A	C	7816805	2	2	266	1	0	0	0	0	0	0	0	1	8368	59	3	5		5	KIN	10	7816805	Silent	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09		7816805	127717942	68	24799										
SEC24C	0	genome.wustl.edu	37	chr10	75525331	75525331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cgtttccagtgctgtttttgCagctgtatcaatgatggtat	10	7	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	10	75525331	75525331	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	silent	c.1350	p.C450	1.000	pfam_Znf_Sec23_Sec24,superfamily_Znf_Sec23_Sec24	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	66	0	0	73	13	14.94	-	-	-	T	75525331	C	T	75525331	2	4	266	1	0	0	0	0	0	0	0	1	14084	718	25	4		4	SEC24C	10	75525331	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	67708526	75525331	60009416	69	24800										
RAB11FIP2	0	genome.wustl.edu	37	chr10	119805656	119805656	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggttggaaaccacttttgggCttgctcggacagcatcatcc	11	11	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	10	119805656	119805656	C	G	SNP	RAB11FIP2	ENST00000369199	human	ensembl	69_37n	-1	known	missense	c.19	p.A7P	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560	41	0	0	44	8	15.38	-	-	-	G	119805656	C	G	119805656	3	3	266	1	0	0	0	0	1	0	0	0	12977	797	28	4	1539	4	RAB11FIP2	10	119805656	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	44280325	119805656	15729091	70	24801										
IFITM5	0	genome.wustl.edu	37	chr11	299462	299462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tgctgggcgtgggggcccggGtgtcctcgcggggatacgcc	20	12	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	299462	299462	G	A	SNP	IFITM5	ENST00000382614	human	ensembl	69_37n	-1	known	missense	c.29	p.T10I	0.202	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM5	HGNC	ENSG00000206013	33	0	0	29	6	17.14	-	-	-	A	299462	G	A	299462	3	1	266	1	0	0	0	0	1	0	0	0	7583	1261	44	4	377	4	IFITM5	11	299462	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		299462	134707054	71	24802										
TRIM6	0	genome.wustl.edu	37	chr11	5617965	5617965	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gagggatcccctgcctttctCggaacggaacggagcagagt	14	11	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	5617965	5617965	C	T	SNP	TRIM6	ENST00000511284	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRIM6	HGNC	ENSG00000121236	10	0	0	3	4	57.14	-	-	-	T	5617965	C	T	5617965	1	4	266	0	1	0	0	0	0	0	0	0	16629	899	31	1		1	TRIM6	11	5617965	RNA	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	5318503	5617965	129388551	72	24803										
BBOX1	0	genome.wustl.edu	37	chr11	27077057	27077057	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctggtatgatgaggaagagtCtctctacccagctgtatggt	12	8	2	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	27077057	27077057	C	A	SNP	BBOX1	ENST00000263182	human	ensembl	69_37n	1	known	missense	c.80	p.S27Y	0.999	pfam_DUF971,tigrfam_2-oxoglut_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_2-oxoglut_dOase	-	no_errors	BBOX1	HGNC	ENSG00000129151	34	0	0	20	4	16.67	-	-	-	A	27077057	C	A	27077057	3	1	266	1	0	0	0	0	1	0	0	0	1338	913	32	2	82	2	BBOX1	11	27077057	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	21459092	27077057	107929459	73	24804										
RAG1	0	genome.wustl.edu	37	chr11	36597221	36597221	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcagctaaacctttcattgaGacagtcccttccatagatgc	6	12	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	36597221	36597221	G	A	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	silent	c.2367	p.E789	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	27	0	0	25	13	34.21	-	-	-	A	36597221	G	A	36597221	2	1	266	1	0	0	0	0	0	0	0	1	13086	933	33	2		2	RAG1	11	36597221	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	9520164	36597221	98409295	74	24805										
NXF1	0	genome.wustl.edu	37	chr11	62572859	62572859	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agatcaagggcgggctcaggCgctggccgctacgccggcaa	16	13	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	62572859	62572859	C	T	SNP	NXF1	ENST00000526163	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NXF1	HGNC	ENSG00000162231	46	0	0	86	13	13	-	-	-	T	62572859	C	T	62572859	1	4	266	0	1	0	0	0	0	0	0	0	10855	783	27	1		1	NXF1	11	62572859	RNA	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	25975638	62572859	72433657	75	24806										
FRMD8	0	genome.wustl.edu	37	chr11	65168222	65168222	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tgctgggcctgcgcttccagGagctgtcgtgggaccacacc	14	14	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	65168222	65168222	G	C	SNP	FRMD8	ENST00000317568	human	ensembl	69_37n	1	known	missense	c.955	p.E319Q	1.000	pfscan_FERM_domain	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD8	HGNC	ENSG00000126391	25	0	0	28	8	22.22	-	-	-	C	65168222	G	C	65168222	3	2	266	1	0	0	0	0	1	0	0	0	6105	1175	41	2	985	2	FRMD8	11	65168222	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	2595363	65168222	69838294	76	24807										
GDPD4	0	genome.wustl.edu	37	chr11	76979571	76979571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tctcaaaggacatcatggtaTtctcaggccccaactgtaga	8	11	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	76979571	76979571	T	C	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.638	p.N213S	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	60	0	0	54	19	26.03	-	-	-	C	76979571	T	C	76979571	3	2	266	1	0	0	0	0	1	0	0	0	6378	1493	52	5	956	5	GDPD4	11	76979571	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	11811349	76979571	58026945	77	24808										
CREBZF	0	genome.wustl.edu	37	chr11	85375464	85375464	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aagcgctgcatttcagcagcCgcggcctcatcgtcatcgtc	10	15	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	11	85375464	85375464	C	G	SNP	CREBZF	ENST00000525639	human	ensembl	69_37n	-1	known	silent	c.456	p.A152	0.983	NULL	pfam_bZIP_1	-	no_errors	CREBZF	HGNC	ENSG00000137504	35	0	0	42	5	10.64	-	-	-	G	85375464	C	G	85375464	2	3	266	1	0	0	0	0	0	0	0	1	3893	639	23	3		3	CREBZF	11	85375464	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	8395893	85375464	49631052	78	24809										
NCAPD2	0	genome.wustl.edu	37	chr12	6630254	6630254	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gaggagaccaggctcttgaaTatcttaggacttatcttcaa	9	8	4	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	6630254	6630254	T	A	SNP	NCAPD2	ENST00000315579	human	ensembl	69_37n	1	known	missense	c.1692	p.N564K	0.035	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	19	0	0	25	8	24.24	-	-	-	A	6630254	T	A	6630254	3	1	266	1	0	0	0	0	1	0	0	0	10277	1403	49	5	1742	5	NCAPD2	12	6630254	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09		6630254	127221641	79	24810										
DUSP16	0	genome.wustl.edu	37	chr12	12672818	12672818	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcaagcaggtgaacagagttGaagctcttctccagtttacc	10	10	2	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	12672818	12672818	G	A	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	silent	c.345	p.F115	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	32	0	0	19	14	42.42	-	-	-	A	12672818	G	A	12672818	2	1	266	1	0	0	0	0	0	0	0	1	4851	1281	45	2		2	DUSP16	12	12672818	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	6042564	12672818	121179077	80	24811										
SLCO1C1	0	genome.wustl.edu	37	chr12	20876178	20876178	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cagtcatcctccagggccaaCtttgtgatcggtatgctcat	9	12	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	20876178	20876178	C	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.1176	p.N392K	1.000	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	58	0	0	41	33	44.59	-	-	-	A	20876178	C	A	20876178	3	1	266	1	0	0	0	0	1	0	0	0	14814	564	20	4	1206	4	SLCO1C1	12	20876178	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	8203360	20876178	112975717	81	24812										
ABCC9	0	genome.wustl.edu	37	chr12	22001151	22001151	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcccgtcggagagttttcctCtctaaagtagtttggtcagc	11	10	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	22001151	22001151	C	G	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.2799	p.E933D	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	41	0	0	49	14	22.22	-	-	-	G	22001151	C	G	22001151	3	3	266	1	0	0	0	0	1	0	0	0	59	912	32	2	2056	2	ABCC9	12	22001151	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	1124973	22001151	111850744	82	24813										
PPFIA2	0	genome.wustl.edu	37	chr12	81732974	81732974	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cttacggagctgcccaagtcGagctttttcttttttaccaa	7	11	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	81732974	81732974	G	A	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	nonsense	c.2533	p.R845*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	27	0	0	16	8	33.33	-	-	-	A	81732974	G	A	81732974	4	1	266	1	0	0	0	0	0	1	0	0	12383	1066	37	1	1288	1	PPFIA2	12	81732974	Nonsense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	59731823	81732974	52118921	83	24814										
C12orf45	0	genome.wustl.edu	37	chr12	105381963	105381965	+	In_Frame_Del	DEL	TCA	TCA	-													0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aggtatatgggacaggttgcTcatcaactcccaacctaagt							TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	105381963	105381965	TCA	-	DEL	C12orf45	ENST00000552951	human	ensembl	69_37n	1	known	in_frame_del	c.134_136	p.I46in_frame_del	0.987:0.990:0.995	NULL	NULL	-	no_errors	C12orf45	HGNC	ENSG00000151131	59	0	0	54	17	23.94	-	-	-	-	105381965	TCA	-	105381963	7	5	266	1	0	1	0	1	0	0	0	0	1703	1551	54	0	140	0	C12orf45	12	105381963	In_Frame_Del	DEL	TCA	TCGA-AC-A5EH-01A-11D-A28B-09	23648989	105381963	28469932	84	24815										
CHFR	0	genome.wustl.edu	37	chr12	133438213	133438213	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttaggggagatgccaccaccCccagaccctgtgagaggaat	12	12	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	12	133438213	133438213	C	G	SNP	CHFR	ENST00000266880	human	ensembl	69_37n	-1	known	silent	c.627	p.G209	0.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609	47	0	0	39	19	32.76	-	-	-	G	133438213	C	G	133438213	2	3	266	1	0	0	0	0	0	0	0	1	3366	610	22	4		4	CHFR	12	133438213	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	28056250	133438213	413682	85	24816										
KBTBD7	0	genome.wustl.edu	37	chr13	41767027	41767027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggtttctctgaacactgtagCattccacttccttcaactta	5	12	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	13	41767027	41767027	C	A	SNP	KBTBD7	ENST00000379483	human	ensembl	69_37n	-1	known	missense	c.1367	p.C456F	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD7	HGNC	ENSG00000120696	37	0	0	26	13	32.5	-	-	-	A	41767027	C	A	41767027	3	1	266	1	0	0	0	0	1	0	0	0	8052	710	25	4	691	4	KBTBD7	13	41767027	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		41767027	73402851	86	24817										
CKAP2	0	genome.wustl.edu	37	chr13	53049032	53049032	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tattgttttaattttcagtgTgaaaaaaaaggtgcagtttg	9	2	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	13	53049032	53049032	T	G	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	missense	c.1808	p.V603G	0.935	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	13	0	0	10	6	37.5	-	-	-	G	53049032	T	G	53049032	3	3	266	1	0	0	0	0	1	0	0	0	3472	1696	59	5	1842	5	CKAP2	13	53049032	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	11282005	53049032	62120846	87	24818										
MYO16	0	genome.wustl.edu	37	chr13	109445911	109445911	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tgaagcttcagagaccaatgAgtatgttaacagatgtcaaa	9	6	2	4			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	13	109445911	109445911	A	G	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.598	p.S200G	0.983	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	17	0	0	19	7	26.92	-	-	-	G	109445911	A	G	109445911	3	3	266	1	0	0	0	0	1	0	0	0	10136	304	11	5	616	5	MYO16	13	109445911	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	56396879	109445911	5723967	88	24819										
EDDM3A	0	genome.wustl.edu	37	chr14	21216054	21216054	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gccctcaaagtactcgagtgTcactgggagaagtacaacaa	10	10	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	14	21216054	21216054	T	G	SNP	EDDM3A	ENST00000326842	human	ensembl	69_37n	1	known	missense	c.315	p.C105W	0.001	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562	36	0	0	32	4	10.81	-	-	-	G	21216054	T	G	21216054	3	3	266	1	0	0	0	0	1	0	0	0	4944	1673	58	5	317	5	EDDM3A	14	21216054	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09		21216054	86133486	89	24820										
OR5AU1	0	genome.wustl.edu	37	chr14	21623712	21623712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gatagcactcactggtggcaAaacccgcatagaagaacatc	9	11	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	14	21623712	21623712	A	C	SNP	OR5AU1	ENST00000304418	human	ensembl	69_37n	-1	known	missense	c.473	p.F158C	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	28	0	0	21	7	25	-	-	-	C	21623712	A	C	21623712	3	2	266	1	0	0	0	0	1	0	0	0	11220	14	1	5	618	5	OR5AU1	14	21623712	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	407658	21623712	85725828	90	24821										
FAM71D	0	genome.wustl.edu	37	chr14	67671361	67671361	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ctacttacagctctgcacctCtgcatataaacaggacacct	5	14	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	14	67671361	67671361	C	G	SNP	FAM71D	ENST00000311864	human	ensembl	69_37n	1	known	missense	c.467	p.S156C	0.913	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71D	HGNC	ENSG00000172717	53	0	0	22	11	33.33	-	-	-	G	67671361	C	G	67671361	3	3	266	1	0	0	0	0	1	0	0	0	5655	913	32	2	477	2	FAM71D	14	67671361	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	46047649	67671361	39678179	91	24822										
TJP1	0	genome.wustl.edu	37	chr15	30024834	30024834	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agtctgtagaaaataaactaCcttctcgaagaaccactctt	5	10	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	30024834	30024834	C	T	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	splice_site	c.1921+1	e14+1	1.000	-	-	-	no_errors	TJP1	HGNC	ENSG00000104067	23	0	0	16	5	23.81	-	-	-	T	30024834	C	T	30024834	5	4	266	1	0	0	0	0	0	0	1	0	16024	521	18	4	3384	4	TJP1	15	30024834	Splice_Site	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		30024834	72506558	92	24823										
MEIS2	0	genome.wustl.edu	37	chr15	37183628	37183628	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acttttttttgtgttgaggaAagctgcccaacttaagattg	9	6	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	37183628	37183628	A	T	SNP	MEIS2	ENST00000560702	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MEIS2	HGNC	ENSG00000134138	8	0	0	12	4	25	-	-	-	T	37183628	A	T	37183628	1	4	266	0	1	0	0	0	0	0	0	0	9539	29	1	5		5	MEIS2	15	37183628	RNA	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	7158794	37183628	65347764	93	24824										
TTBK2	0	genome.wustl.edu	37	chr15	43044687	43044687	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ccatgttcattctctgaaacAcaatgaaatagttctccatt	4	10	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	43044687	43044687	A	G	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	silent	c.2757	p.C919	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	33	0	0	16	11	40.74	-	-	-	G	43044687	A	G	43044687	2	3	266	1	0	0	0	0	0	0	0	1	16774	157	6	5		5	TTBK2	15	43044687	Silent	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	5861059	43044687	59486705	94	24825										
TGM7	0	genome.wustl.edu	37	chr15	43579533	43579533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ccgtacttcacaggctgcccGcccctggctgaccactgctg	10	18	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	43579533	43579533	G	A	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	silent	c.810	p.G270	0.039	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	27	0	0	29	7	18.92	-	-	-	A	43579533	G	A	43579533	2	1	266	1	0	0	0	0	0	0	0	1	15930	1074	38	1		1	TGM7	15	43579533	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	534846	43579533	58951859	95	24826										
STRC	0	genome.wustl.edu	37	chr15	43892280	43892280	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctgagcactggtgagactaGatagttggatgggactaaac	13	7	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	43892280	43892280	G	A	SNP	STRC	ENST00000450892	human	ensembl	69_37n	-1	known	missense	c.5117	p.S1706F	1.000	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866	99	0	0	110	29	20.86	-	-	-	A	43892280	G	A	43892280	3	1	266	1	0	0	0	0	1	0	0	0	15419	942	33	2	218	2	STRC	15	43892280	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	312747	43892280	58639112	96	24827										
DUOXA1	0	genome.wustl.edu	37	chr15	45421674	45421674	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aaacctagcgacgcagttccGggtctggcggggcgcgggcg	18	12	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	45421674	45421674	G	A	SNP	DUOXA1	ENST00000558976	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DUOXA1	HGNC	ENSG00000140254	36	0	0	38	17	30.91	-	-	-	A	45421674	G	A	45421674	1	1	266	0	1	0	0	0	0	0	0	0	4837	1131	39	1		1	DUOXA1	15	45421674	RNA	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	1529394	45421674	57109718	97	24828										
FAM108C1	0	genome.wustl.edu	37	chr15	81041912	81041912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agagcattgggactgtccccAcggtagacttggcctcgagg	14	11	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	81041912	81041912	A	G	SNP	FAM108C1	ENST00000258884	human	ensembl	69_37n	1	known	missense	c.649	p.T217A	1.000	pfam_Peptidase_S9,pfam_Dienelactn_hydro	pfam_Peptidase_S9,pfam_Dienelactn_hydro	-	no_errors	FAM108C1	HGNC	ENSG00000136379	59	0	0	70	31	30.69	-	-	-	G	81041912	A	G	81041912	3	3	266	1	0	0	0	0	1	0	0	0	5433	159	6	5	655	5	FAM108C1	15	81041912	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	35620238	81041912	21489480	98	24829										
NTRK3	0	genome.wustl.edu	37	chr15	88678430	88678430	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agttgccattgttgtagtggGtgggcttgttgaagagcagg	17	4	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	15	88678430	88678430	G	T	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	missense	c.1106	p.T369N	1.000	pfam_Ig_I-set,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	124	0	0	103	41	28.47	-	-	-	T	88678430	G	T	88678430	3	4	266	1	0	0	0	0	1	0	0	0	10781	1261	44	4	1719	4	NTRK3	15	88678430	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	7636518	88678430	13852962	99	24830										
WDR24	0	genome.wustl.edu	37	chr16	737252	737252	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cccaaacatagatgttgtggTccaccatcatggagcacgtg	10	11	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	737252	737252	T	A	SNP	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	missense	c.1214	p.D405V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	31	0	0	38	12	24	-	-	-	A	737252	T	A	737252	3	1	266	1	0	0	0	0	1	0	0	0	17378	1667	58	5	1576	5	WDR24	16	737252	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09		737252	89617501	100	24831										
PKD1	0	genome.wustl.edu	37	chr16	2166035	2166035	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cacctgcagccgcagctgggCgggccgccggagctcctggg	17	16	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	2166035	2166035	C	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.1807	p.A603S	0.934	tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	81	0	0	85	37	30.33	-	-	-	A	2166035	C	A	2166035	3	1	266	1	0	0	0	0	1	0	0	0	12037	768	27	3	11256	3	PKD1	16	2166035	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	1428783	2166035	88188718	101	24832										
IL32	0	genome.wustl.edu	37	chr16	3131812	3131812	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gacctggtggcacggggttcTggcctgggtgaaggagaagg	20	7	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	3131812	3131812	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	1	putative	missense	c.518	p.L173P	0.002	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	34	0	0	45	14	23.73	-	-	-	C	3131812	T	C	3131812	3	2	266	1	0	0	0	0	1	0	0	0	7746	1595	55	5		5	IL32	16	3131812	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	965777	3131812	87222941	102	24833										
CREBBP	0	genome.wustl.edu	37	chr16	3900661	3900661	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttcagtgcttgggaggcagcGggggtgggcccagaggtgct	20	8	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	3900661	3900661	G	T	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	0.961	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	25	0	0	27	20	41.67	-	-	-	T	3900661	G	T	3900661	2	4	266	1	0	0	0	0	0	0	0	1	3891	1103	39	3		3	CREBBP	16	3900661	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	768849	3900661	86454092	103	24834										
ABCC1	0	genome.wustl.edu	37	chr16	16150133	16150133	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agccgtgggcaccttcacctGggtctgcacgccctttctgg	12	15	3	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	16150133	16150133	G	A	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	nonsense	c.1658	p.W553*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	18	0	0	19	8	29.63	-	-	-	A	16150133	G	A	16150133	4	1	266	1	0	0	0	0	0	1	0	0	49	1357	47	4	1704	4	ABCC1	16	16150133	Nonsense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	12249472	16150133	74204620	104	24835										
SEZ6L2	0	genome.wustl.edu	37	chr16	29896968	29896968	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tctgacagcagctccacgtaGagggactgggcgtcactgat	13	11	2	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	29896968	29896968	G	C	SNP	SEZ6L2	ENST00000563118	human	ensembl	69_37n	-1	putative	missense	c.326	p.S109C	1.000	superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon	SEZ6L2	HGNC	ENSG00000174938	29	0	0	27	16	37.21	-	-	-	C	29896968	G	C	29896968	3	2	266	1	0	0	0	0	1	0	0	0	14232	929	33	2	1504	2	SEZ6L2	16	29896968	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	13746835	29896968	60457785	105	24836										
SRCAP	0	genome.wustl.edu	37	chr16	30718605	30718606	+	Frame_Shift_Ins	INS	-	-	T													0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cccctcgccccaaaggtcacINStgggactatttgtgcgaaga							TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	30718605	30718606	-	T	INS	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	frame_shift_ins	c.408_409	p.W136fs	1.000:1.000	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	50	0	0	65	19	22.62	-	-	-	T	30718606	-	T	30718605	7	5	266	1	0	1	1	0	0	0	0	0	15226	564	20	0	418	0	SRCAP	16	30718605	Frame_Shift_Ins	INS	-	TCGA-AC-A5EH-01A-11D-A28B-09	821637	30718605	59636148	106	24837										
PKD1L2	0	genome.wustl.edu	37	chr16	81187874	81187874	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggctgcccctcgtcggtgtcCtgtgtagactgtcaccaggt	13	13	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	16	81187874	81187874	C	G	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	missense	c.4195	p.G1399R	0.992	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	41	0	0	20	17	45.95	-	-	-	G	81187874	C	G	81187874	3	3	266	1	0	0	0	0	1	0	0	0	12039	690	24	4	3259	4	PKD1L2	16	81187874	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	50469269	81187874	9166879	107	24838										
TP53	0	genome.wustl.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	47	0	0	24	20	45.45	-	-	-	C	7578268	A	C	7578268	3	2	266	1	0	0	0	0	1	0	0	0	16477	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09		7578268	73616942	108	24839										
MYH10	0	genome.wustl.edu	37	chr17	8383634	8383634	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agctcggcgttcagtgtgtcCacctagagaggagagaggag	16	8	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	8383634	8383634	C	T	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	silent	c.5361	p.V1787	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	46	0	0	31	10	24.39	-	-	-	T	8383634	C	T	8383634	2	4	266	1	0	0	0	0	0	0	0	1	10102	581	21	4		4	MYH10	17	8383634	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	805366	8383634	72811576	109	24840										
NF1	0	genome.wustl.edu	37	chr17	29562791	29562791	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	taatgacattctgtttcaagGtttgtatcattcattttgtg	7	5	4	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	29562791	29562791	G	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	splice_site	c.3870+1	e28+1	1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	30	0	0	22	7	24.14	-	-	-	T	29562791	G	T	29562791	5	4	266	1	0	0	0	0	0	0	1	0	10428	1275	44	4	4042	4	NF1	17	29562791	Splice_Site	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	21179157	29562791	51632419	110	24841										
SYNRG	0	genome.wustl.edu	37	chr17	35898428	35898428	+	Frame_Shift_Del	DEL	A	A	-													0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	aaatatgaaagaacatacctAataaatattccatgccttga							TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	35898428	35898428	A	-	DEL	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	frame_shift_del	c.3515	p.L1172fs	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	13	0	0	4	2	33.33	-	-	-	-	35898428	A	-	35898428	7	5	266	1	0	1	0	1	0	0	0	0	15552	372	13	0	522	0	SYNRG	17	35898428	Frame_Shift_Del	DEL	A	TCGA-AC-A5EH-01A-11D-A28B-09	6335637	35898428	45296782	111	24842										
CISD3	0	genome.wustl.edu	37	chr17	36887616	36887616	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	agccaggtccgtggtggcccTgaagacccccatcaaggtgg	14	13	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	36887616	36887616	T	C	SNP	CISD3	ENST00000439660	human	ensembl	69_37n	1	known	missense	c.128	p.L43P	0.917	NULL	pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	-	no_errors	CISD3	HGNC	ENSG00000230055	34	0	0	25	5	16.67	-	-	-	C	36887616	T	C	36887616	3	2	266	1	0	0	0	0	1	0	0	0	3466	1580	55	5	138	5	CISD3	17	36887616	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	989188	36887616	44307594	112	24843										
BRCA1	0	genome.wustl.edu	37	chr17	41228540	41228540	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tctttatttttactggtagaActatctgcagacacctcaaa	5	9	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	41228540	41228540	A	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	silent	c.4512	p.S1504	0.002	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	49	0	0	19	18	48.65	-	-	-	G	41228540	A	G	41228540	2	3	266	1	0	0	0	0	0	0	0	1	1506	40	2	5		5	BRCA1	17	41228540	Silent	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	4340924	41228540	39966670	113	24844										
COL1A1	0	genome.wustl.edu	37	chr17	48271770	48271770	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcaccaggagatcctttgggGccagcagggccaggagaacc	14	12	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	48271770	48271770	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	silent	c.1554	p.G518	0.814	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	30	0	0	20	28	58.33	-	-	-	A	48271770	G	A	48271770	2	1	266	1	0	0	0	0	0	0	0	1	3707	1190	42	4		4	COL1A1	17	48271770	Silent	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	7043230	48271770	32923440	114	24845										
WFIKKN2	0	genome.wustl.edu	37	chr17	48917995	48917995	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ccagcgctgtcgggcctgcaAgcctcggcagaagctcgtta	13	14	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	48917995	48917995	A	T	SNP	WFIKKN2	ENST00000311378	human	ensembl	69_37n	1	known	missense	c.1346	p.K449M	1.000	superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714	26	0	0	43	7	14	-	-	-	T	48917995	A	T	48917995	3	4	266	1	0	0	0	0	1	0	0	0	17456	72	3	5	1352	5	WFIKKN2	17	48917995	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	646225	48917995	32277215	115	24846										
HSF5	0	genome.wustl.edu	37	chr17	56536233	56536233	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tagcaggccccatttctgaaAtgaggaatcccatctgttct	8	11	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	56536233	56536233	A	T	SNP	HSF5	ENST00000323777	human	ensembl	69_37n	-1	known	missense	c.1616	p.I539N	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160	90	0	0	63	30	32.26	-	-	-	T	56536233	A	T	56536233	3	4	266	1	0	0	0	0	1	0	0	0	7450	101	4	5	182	5	HSF5	17	56536233	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	7618238	56536233	24658977	116	24847										
TMC8	0	genome.wustl.edu	37	chr17	76135316	76135316	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acaggctccggaagcagctgGtgtgggtgagtgtcctcggg	18	9	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	76135316	76135316	G	C	SNP	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	missense	c.1897	p.V633L	0.962	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	15	0	0	14	5	26.32	-	-	-	C	76135316	G	C	76135316	3	2	266	1	0	0	0	0	1	0	0	0	16086	1261	44	4	1951	4	TMC8	17	76135316	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	19599083	76135316	5059894	117	24848										
RNF213	0	genome.wustl.edu	37	chr17	78320862	78320862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggcagccccaacgagacagaGctcatagagagcgccaaggg	14	12	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	17	78320862	78320862	G	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.8727	p.E2909D	1.000	smart_AAA+_ATPase	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	37	0	0	61	13	17.57	-	-	-	T	78320862	G	T	78320862	3	4	266	1	0	0	0	0	1	0	0	0	13563	962	34	4	9156	4	RNF213	17	78320862	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	2185546	78320862	2874348	118	24849										
DLGAP1	0	genome.wustl.edu	37	chr18	3879801	3879801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cgccttggtggccagggtgcGgggcaccagggcacactcgt	17	13	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	18	3879801	3879801	G	A	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.268	p.R90C	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	38	0	0	44	14	24.14	-	-	-	A	3879801	G	A	3879801	3	1	266	1	0	0	0	0	1	0	0	0	4595	1116	39	1	2760	1	DLGAP1	18	3879801	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09		3879801	74197447	119	24850										
PSMA8	0	genome.wustl.edu	37	chr18	23713980	23713980	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gtcttctccccagacggacaCctttttcaagttgaatatgc	7	12	3	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	18	23713980	23713980	C	A	SNP	PSMA8	ENST00000308268	human	ensembl	69_37n	1	known	missense	c.51	p.H17Q	1.000	pfam_Proteasome_asu_N,smart_Proteasome_asu_N	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611	32	0	0	27	6	18.18	-	-	-	A	23713980	C	A	23713980	3	1	266	1	0	0	0	0	1	0	0	0	12753	506	18	4	53	4	PSMA8	18	23713980	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	19834179	23713980	54363268	120	24851										
MYO5B	0	genome.wustl.edu	37	chr18	47527678	47527678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttcgatgttggtttcactggCcgagccaccaacggtggcga	13	11	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	18	47527678	47527678	C	T	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.559	p.A187T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	73	0	0	86	19	18.1	-	-	-	T	47527678	C	T	47527678	3	4	266	1	0	0	0	0	1	0	0	0	10151	739	26	4	5131	4	MYO5B	18	47527678	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	23813698	47527678	30549570	121	24852										
MED16	0	genome.wustl.edu	37	chr19	875298	875298	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ccggtcgccggggctcttgtCaggcgtgttgagaaagtggg	18	9	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	875298	875298	C	A	SNP	MED16	ENST00000325464	human	ensembl	69_37n	-1	known	missense	c.1717	p.D573Y	0.999	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	34	0	0	44	6	12	-	-	-	A	875298	C	A	875298	3	1	266	1	0	0	0	0	1	0	0	0	9505	826	29	2	944	2	MED16	19	875298	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		875298	58253685	122	24853										
ZNRF4	0	genome.wustl.edu	37	chr19	5456653	5456653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gggccaccggccccccatctGggccattcaagtccagctac	10	18	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	5456653	5456653	G	C	SNP	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	missense	c.1151	p.W384S	0.944	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	20	0	0	24	5	17.24	-	-	-	C	5456653	G	C	5456653	3	2	266	1	0	0	0	0	1	0	0	0	18307	1357	47	4	1153	4	ZNRF4	19	5456653	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	4581355	5456653	53672330	123	24854										
OR7D2	0	genome.wustl.edu	37	chr19	9296887	9296887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acccccacctctgtggcctcCtggtttttgtcacctggctc	8	17	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	9296887	9296887	C	G	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.430	p.L144V	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	74	0	0	71	15	17.44	-	-	-	G	9296887	C	G	9296887	3	3	266	1	0	0	0	0	1	0	0	0	11292	680	24	4	432	4	OR7D2	19	9296887	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	3840234	9296887	49832096	124	24855										
EMR3	0	genome.wustl.edu	37	chr19	14743742	14743742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tcacatcctaccttgtgttcTggatggttgacacttcacta	7	11	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	14743742	14743742	T	C	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.1634	p.Q545R	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	39	0	0	42	21	33.33	-	-	-	C	14743742	T	C	14743742	3	2	266	1	0	0	0	0	1	0	0	0	5143	1580	55	5	340	5	EMR3	19	14743742	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	5446855	14743742	44385241	125	24856										
UNC13A	0	genome.wustl.edu	37	chr19	17774364	17774364	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gctgctcaccccagccaaaaTaattccagttgcctacaaag	6	14	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	17774364	17774364	T	G	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.800	p.Y267S	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	19	0	0	21	13	38.24	-	-	-	G	17774364	T	G	17774364	3	3	266	1	0	0	0	0	1	0	0	0	17081	1406	49	5	4715	5	UNC13A	19	17774364	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	3030622	17774364	41354619	126	24857										
ZNF208	0	genome.wustl.edu	37	chr19	22156813	22156813	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttgccacattctttacatttGtagggcttctctccagcatg	7	11	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	22156813	22156813	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	nonsense	c.1023	p.Y341*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	28	0	0	12	16	57.14	-	-	-	T	22156813	G	T	22156813	4	4	266	1	0	0	0	0	0	1	0	0	17862	1372	48	4	2823	4	ZNF208	19	22156813	Nonsense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	4382449	22156813	36972170	127	24858										
HAUS5	0	genome.wustl.edu	37	chr19	36109547	36109547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcggcaagtcttgacccagcGcctccagggcctggtggagg	16	13	1	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	36109547	36109547	G	C	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	missense	c.962	p.R321P	0.148	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	40	0	0	51	16	23.88	-	-	-	C	36109547	G	C	36109547	3	2	266	1	0	0	0	0	1	0	0	0	7020	1087	38	3	1008	3	HAUS5	19	36109547	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	13952734	36109547	23019436	128	24859										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41800328	41800328	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	caacccttccaagaagtacaAcatcctgggtaccaatgcca	6	14	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	41800328	41800328	A	C	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.1352	p.N451T	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	70	0	0	59	22	27.16	-	-	-	C	41800328	A	C	41800328	3	2	266	1	0	0	0	0	1	0	0	0	7325	43	2	5	1386	5	HNRNPUL1	19	41800328	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	5690781	41800328	17328655	129	24860										
HIF3A	0	genome.wustl.edu	37	chr19	46834472	46834472	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ggagctgctgggagtgagacCtcccaaaaggtcccccagcc	13	14	0	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	46834472	46834472	C	G	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.1772	p.P591R	0.992	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	43	0	0	67	19	22.09	-	-	-	G	46834472	C	G	46834472	3	3	266	1	0	0	0	0	1	0	0	0	7156	681	24	4	1846	4	HIF3A	19	46834472	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	5034144	46834472	12294511	130	24861										
NLRP9	0	genome.wustl.edu	37	chr19	56243877	56243877	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cacagatgcatgaaggcaaaAcagtcccctctcctttggag	9	12	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	19	56243877	56243877	A	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	nonsense	c.1320	p.C440*	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	29	0	0	23	11	31.43	-	-	-	T	56243877	A	T	56243877	4	4	266	1	0	0	0	0	0	1	0	0	10556	41	2	5	1687	5	NLRP9	19	56243877	Nonsense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	9409405	56243877	2885106	131	24862										
ANGPT4	0	genome.wustl.edu	37	chr20	896547	896547	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gcaaacctcccatgccccgtAccttcttcagccactgcgtg	7	18	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	20	896547	896547	A	G	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	splice_site	c.309+2	e1+2	0.998	-	-	-	no_errors	ANGPT4	HGNC	ENSG00000101280	56	0	0	59	21	26.25	-	-	-	G	896547	A	G	896547	5	3	266	1	0	0	0	0	0	0	1	0	612	405	14	5	1236	5	ANGPT4	20	896547	Splice_Site	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09		896547	62128973	132	24863										
SLC12A5	0	genome.wustl.edu	37	chr20	44681681	44681681	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cctgggaaccctgagcgcttCtctgagggcagcatcgacgt	13	13	1	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	20	44681681	44681681	C	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	silent	c.2532	p.F844	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	73	0	0	86	24	21.82	-	-	-	T	44681681	C	T	44681681	2	4	266	1	0	0	0	0	0	0	0	1	14475	912	32	2		2	SLC12A5	20	44681681	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	43785134	44681681	18343839	133	24864										
CECR2	0	genome.wustl.edu	37	chr22	17976444	17976444	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ccctggtctaggcctcagacAttccacagctacctagagga	9	14	2	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	22	17976444	17976444	A	G	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	silent	c.165	p.T55	0.711	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	316	0	0	27	12	30.77	-	-	-	G	17976444	A	G	17976444	2	3	266	1	0	0	0	0	0	0	0	1	3235	204	8	5		5	CECR2	22	17976444	Silent	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09		17976444	33328122	134	24865										
ADORA2A	0	genome.wustl.edu	37	chr22	24829415	24829415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tgtacatcacggtggagctgGccattgctgtgctggccatc	13	11	1	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	22	24829415	24829415	G	T	SNP	ADORA2A	ENST00000337539	human	ensembl	69_37n	1	known	missense	c.43	p.A15S	1.000	prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271	22	0	0	43	11	20.37	-	-	-	T	24829415	G	T	24829415	3	4	266	1	0	0	0	0	1	0	0	0	327	1203	42	4	45	4	ADORA2A	22	24829415	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	6852971	24829415	26475151	135	24866										
TRIOBP	0	genome.wustl.edu	37	chr22	38150910	38150910	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tccccctcgctcaccaccacCtctacttcgcagtggaagaa	6	18	2	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	22	38150910	38150910	C	G	SNP	TRIOBP	ENST00000413051	human	ensembl	69_37n	1	known	missense	c.272	p.P91R	0.003	NULL	NULL	-	no_start_codon	TRIOBP	HGNC	ENSG00000100106	58	0	0	64	15	18.99	-	-	-	G	38150910	C	G	38150910	3	3	266	1	0	0	0	0	1	0	0	0	16649	668	24	4	5635	4	TRIOBP	22	38150910	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	13321495	38150910	13153656	136	24867										
ENTHD1	0	genome.wustl.edu	37	chr22	40140261	40140261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	acatggataaaggagaaaagGaagatgctccctcagaagca	11	7	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	22	40140261	40140261	G	T	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	missense	c.1247	p.S416Y	0.994	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	33	0	0	18	6	25	-	-	-	T	40140261	G	T	40140261	3	4	266	1	0	0	0	0	1	0	0	0	5174	1174	41	2	580	2	ENTHD1	22	40140261	Missense_Mutation	SNP	G	TCGA-AC-A5EH-01A-11D-A28B-09	1989351	40140261	11164305	137	24868										
CLCN4	0	genome.wustl.edu	37	chrX	10176285	10176285	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gggggcttgtggggaaccctCttcatccgctgcaacatcgc	13	13	2	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	X	10176285	10176285	C	G	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	silent	c.1044	p.L348	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	42	0	0	52	9	14.75	-	-	-	G	10176285	C	G	10176285	2	3	266	1	0	0	0	0	0	0	0	1	3495	900	32	2		2	CLCN4	23	10176285	Silent	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09		10176285	145094275	138	24869										
KIAA1210	0	genome.wustl.edu	37	chrX	118221386	118221386	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	gagaaaactttctgtgggtcTtcaggcctccccaaggactg	11	11	3	1			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	X	118221386	118221386	T	G	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3807	p.E1269D	0.002	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	39	0	0	31	26	45.61	-	-	-	G	118221386	T	G	118221386	3	3	266	1	0	0	0	0	1	0	0	0	8266	1606	56	5	1338	5	KIAA1210	23	118221386	Missense_Mutation	SNP	T	TCGA-AC-A5EH-01A-11D-A28B-09	108045101	118221386	37049174	139	24870										
HAUS7	0	genome.wustl.edu	37	chrX	152720419	152720419	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	cttagaaaaccaaaatgaacAtcacggaatccttgagccaa	6	10	1	3			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	X	152720419	152720419	A	T	SNP	HAUS7	ENST00000370212	human	ensembl	69_37n	-1	known	missense	c.1053	p.D351E	0.000	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397	69	0	0	35	12	25.53	-	-	-	T	152720419	A	T	152720419	3	4	266	1	0	0	0	0	1	0	0	0	7022	232	8	5		5	HAUS7	23	152720419	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	34499033	152720419	2550141	140	24871										
RPL10	0	genome.wustl.edu	37	chrX	153628161	153628161	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	tagccctggaggctgcccgaAtttgtgccaataagtacatg	11	10	0	0			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	X	153628161	153628161	A	C	SNP	RPL10	ENST00000344746	human	ensembl	69_37n	1	known	missense	c.208	p.I70L	0.984	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403	50	0	0	30	22	42.31	-	-	-	C	153628161	A	C	153628161	3	2	266	1	0	0	0	0	1	0	0	0	13640	101	4	5	222	5	RPL10	23	153628161	Missense_Mutation	SNP	A	TCGA-AC-A5EH-01A-11D-A28B-09	907742	153628161	1642399	141	24872										
F8	0	genome.wustl.edu	37	chrX	154090058	154090058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.126760563380282	18	0.0188760843560364	1.96511965192168	1.98129347621733	1.95496399480581	0.365117975786538	0.983706281871168	9	ttttgaaggagaccaggtggCaaacatattggtaaagtagg	13	4	0	2			TCGA-AC-A5EH-01A-11D-A28B-09	TCGA-AC-A5EH-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	571dac9a-a2d6-4d29-ae22-111cd9822c1a	8eea835b-f1ff-4efc-805e-149e5e2bd9c5	X	154090058	154090058	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.6658	p.A2220T	0.983	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	40	0	0	19	12	38.71	-	-	-	T	154090058	C	T	154090058	3	4	266	1	0	0	0	0	1	0	0	0	5387	710	25	4	409	4	F8	23	154090058	Missense_Mutation	SNP	C	TCGA-AC-A5EH-01A-11D-A28B-09	461897	154090058	1180502	142	24873										
TIE1	0	genome.wustl.edu	37	chr1	43785333	43785333	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gttccaggtgtgacacaggtGtgtcttgggtataaagtacc	13	7	1	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	1	43785333	43785333	G	A	SNP	TIE1	ENST00000473014	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIE1	HGNC	ENSG00000066056	8	0	0	10	4	28.57	-	-	-	A	43785333	G	A	43785333	1	1	267	0	1	0	0	0	0	0	0	0	15988	1392	48	4		4	TIE1	1	43785333	RNA	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09		43785333	205465288	1	24874										
VAV3	0	genome.wustl.edu	37	chr1	108299953	108299953	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tggtatgtttgaccagttccTatttggaagatatggtttag	11	4	0	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	1	108299953	108299953	T	C	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	splice_site	c.1018-2	e11-2	1.000	-	-	-	no_errors	VAV3	HGNC	ENSG00000134215	43	0	0	24	3	11.11	-	-	-	C	108299953	T	C	108299953	5	2	267	1	0	0	0	0	0	0	1	0	17230	1536	53	5	1620	5	VAV3	1	108299953	Splice_Site	SNP	T	TCGA-AC-A5EI-01A-11D-A27P-09	64514620	108299953	140950668	2	24875										
RYR2	0	genome.wustl.edu	37	chr1	237777439	237777439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tctgtgctcttgggaaccacCgggtggcccatgccctgtgc	13	14	2	0			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	1	237777439	237777439	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5005	p.R1669W	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	110	0	0	44	48	52.17	-	-	-	T	237777439	C	T	237777439	3	4	267	1	0	0	0	0	1	0	0	0	13855	643	23	1	5157	1	RYR2	1	237777439	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09	129477486	237777439	11473182	3	24876										
ZBTB20	0	genome.wustl.edu	37	chr3	114070183	114070183	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	attctgcatggagcacgcgtAgagtgccgagtagatcctgt	13	9	1	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	3	114070183	114070183	A	T	SNP	ZBTB20	ENST00000474710	human	ensembl	69_37n	-1	known	missense	c.742	p.Y248N	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	46	0	0	20	19	48.72	-	-	-	T	114070183	A	T	114070183	3	4	267	1	0	0	0	0	1	0	0	0	17625	420	15	5	1491	5	ZBTB20	3	114070183	Missense_Mutation	SNP	A	TCGA-AC-A5EI-01A-11D-A27P-09		114070183	83952247	4	24877										
CORIN	0	genome.wustl.edu	37	chr4	47597910	47597910	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tctcacaaacaagaggcccaCcgctgtcaccctgcaataag	7	15	2	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	4	47597910	47597910	C	T	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.2957	p.G986D	1.000	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	31	0	0	27	4	12.9	-	-	-	T	47597910	C	T	47597910	3	4	267	1	0	0	0	0	1	0	0	0	3782	507	18	4	175	4	CORIN	4	47597910	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		47597910	143556366	5	24878										
METAP1	0	genome.wustl.edu	37	chr4	99955394	99955394	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ctcccagaagatgaaaaggcGaagcgagaagtgtcttcctg	12	9	1	4			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	4	99955394	99955394	G	T	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	silent	c.180	p.A60	0.933	NULL	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	21	0	0	10	12	54.55	-	-	-	T	99955394	G	T	99955394	2	4	267	1	0	0	0	0	0	0	0	1	9557	1045	37	3		3	METAP1	4	99955394	Silent	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	52357484	99955394	91198882	6	24879										
OTUD4	0	genome.wustl.edu	37	chr4	146058951	146058953	+	In_Frame_Del	DEL	TGT	TGT	-													0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ttaggatcttttactttttcTgttttttctttcaggctttg							TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	4	146058951	146058953	TGT	-	DEL	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	in_frame_del	c.2976_2974	p.T992in_frame_del	1.000:1.000:0.936	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	53	0	0	30	18	37.5	-	-	-	-	146058953	TGT	-	146058951	7	5	267	1	0	1	0	1	0	0	0	0	11387	1567	55	0	372	0	OTUD4	4	146058951	In_Frame_Del	DEL	TGT	TCGA-AC-A5EI-01A-11D-A27P-09	46103557	146058951	45095325	7	24880										
ZNF608	0	genome.wustl.edu	37	chr5	124036959	124036959	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tggcactgtaaacagggggtCaacctgaaagacagacaggc	13	9	1	3			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	5	124036959	124036959	C	T	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.910	p.D304N	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	56	0	0	53	9	14.52	-	-	-	T	124036959	C	T	124036959	3	4	267	1	0	0	0	0	1	0	0	0	18130	826	29	2	3660	2	ZNF608	5	124036959	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		124036959	56878301	8	24881										
NEDD9	0	genome.wustl.edu	37	chr6	11185729	11185729	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tgaagagtgcgtcaatggcgTtgagaagggaaatgaaatgg	16	3	1	4			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	6	11185729	11185729	T	C	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.2171	p.N724S	0.998	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	64	0	0	19	27	58.7	-	-	-	C	11185729	T	C	11185729	3	2	267	1	0	0	0	0	1	0	0	0	10385	1725	60	5	337	5	NEDD9	6	11185729	Missense_Mutation	SNP	T	TCGA-AC-A5EI-01A-11D-A27P-09		11185729	159929338	9	24882										
PKD1L1	0	genome.wustl.edu	37	chr7	47879188	47879188	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	accatcacgtggctgatgaaCcagcctggggaaggcccacg	13	13	1	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	7	47879188	47879188	C	G	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.5625	p.W1875C	1.000	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	90	0	0	57	50	46.73	-	-	-	G	47879188	C	G	47879188	3	3	267	1	0	0	0	0	1	0	0	0	12038	508	18	4	3012	4	PKD1L1	7	47879188	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		47879188	111259475	10	24883										
POM121	0	genome.wustl.edu	37	chr7	72416136	72416136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tcattccaggcaccgccaccCccacctttggtctgaacacc	6	19	2	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	7	72416136	72416136	C	G	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.3541	p.P1181A	0.988	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	105	0	0	88	45	33.83	-	-	-	G	72416136	C	G	72416136	3	3	267	1	0	0	0	0	1	0	0	0	12313	623	22	4	2788	4	POM121	7	72416136	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09	24536948	72416136	86722527	11	24884										
NRCAM	0	genome.wustl.edu	37	chr7	107823310	107823310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	atcatcaccatctttctggcGccagctaactttgtactgaa	6	12	4	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	7	107823310	107823310	G	A	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.2359	p.R787C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	42	0	0	35	24	40.68	-	-	-	A	107823310	G	A	107823310	3	1	267	1	0	0	0	0	1	0	0	0	10717	1087	38	1	1629	1	NRCAM	7	107823310	Missense_Mutation	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	35407174	107823310	51315353	12	24885										
ADAM32	0	genome.wustl.edu	37	chr8	39111964	39111964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	cagaaacaagtgccattgttCgccaggctataagcctccaa	8	12	0	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	8	39111964	39111964	C	T	SNP	ADAM32	ENST00000379907	human	ensembl	69_37n	1	known	missense	c.1934	p.S645L	0.000	pfscan_EG-like_dom	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140	44	0	0	39	10	20.41	-	-	-	T	39111964	C	T	39111964	3	4	267	1	0	0	0	0	1	0	0	0	249	893	31	1	2004	1	ADAM32	8	39111964	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		39111964	107252058	13	24886										
FREM1	0	genome.wustl.edu	37	chr9	14806824	14806824	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	aagggctgttgagcagccctCatctacaacaaacacgggac	10	12	2	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	9	14806824	14806824	C	T	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.3112	p.E1038K	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	31	0	0	33	6	15.38	-	-	-	T	14806824	C	T	14806824	3	4	267	1	0	0	0	0	1	0	0	0	6093	835	29	2	3560	2	FREM1	9	14806824	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		14806824	126406607	14	24887										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	81	0	0	48	8	14.04	-	-	-	-	8111434	CA	-	8111433	8	5	267	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-AC-A5EI-01A-11D-A27P-09		8111433	127423314	15	24888										
C10orf2	0	genome.wustl.edu	37	chr10	102750656	102750656	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	caagactacatcatcggggtCtttcggaagtttgcaacaga	10	9	2	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	10	102750656	102750656	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	silent	c.1623	p.V541	0.999	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	129	0	0	66	30	31.25	-	-	-	T	102750656	C	T	102750656	2	4	267	1	0	0	0	0	0	0	0	1	1607	900	32	2		2	C10orf2	10	102750656	Silent	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09	94639223	102750656	32784091	16	24889										
ATRNL1	0	genome.wustl.edu	37	chr10	116853435	116853435	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gcggcggagaggttttctgcGgccggaattcccttcaacag	14	11	2	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	10	116853435	116853435	G	T	SNP	ATRNL1	ENST00000527407	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.178	-	-	-	no_errors	ATRNL1	HGNC	ENSG00000107518	103	0	0	41	40	49.38	-	-	-	T	116853435	G	T	116853435	1	4	267	0	1	0	0	0	0	0	0	0	1211	1131	39	3		3	ATRNL1	10	116853435	RNA	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	14102779	116853435	18681312	17	24890										
OSBPL5	0	genome.wustl.edu	37	chr11	3114834	3114834	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tgtctgcggacctccccgctCggggtccagaaaagcgcact	12	15	1	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	11	3114834	3114834	C	G	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	silent	c.1869	p.P623	0.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	84	0	0	35	26	42.62	-	-	-	G	3114834	C	G	3114834	2	3	267	1	0	0	0	0	0	0	0	1	11353	871	31	3		3	OSBPL5	11	3114834	Silent	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		3114834	131891682	18	24891										
PRPF19	0	genome.wustl.edu	37	chr11	60670977	60670977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tggccgggatgctggtggctGagggaggcttgggccggatt	21	7	0	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	11	60670977	60670977	G	A	SNP	PRPF19	ENST00000227524	human	ensembl	69_37n	-1	known	missense	c.200	p.S67L	1.000	pfam_Pre-mRNA_splic_Prp19,smart_Ubox_domain	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107	56	0	0	36	6	14.29	-	-	-	A	60670977	G	A	60670977	3	1	267	1	0	0	0	0	1	0	0	0	12645	1294	45	2	1370	2	PRPF19	11	60670977	Missense_Mutation	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	57556143	60670977	74335539	19	24892										
NYNRIN	0	genome.wustl.edu	37	chr14	24886207	24886207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gcacctggccttcagggcctCctccactgatgccacaccgt	9	18	1	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	14	24886207	24886207	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.5252	p.S1751F	0.916	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	42	0	0	23	24	51.06	-	-	-	T	24886207	C	T	24886207	3	4	267	1	0	0	0	0	1	0	0	0	10869	855	30	2	5282	2	NYNRIN	14	24886207	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		24886207	82463333	20	24893										
PRKD1	0	genome.wustl.edu	37	chr14	30099920	30099920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gtaggcacatgatgagctttGggctggttagaaaactggca	14	6	0	3			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	14	30099920	30099920	G	A	SNP	PRKD1	ENST00000546371	human	ensembl	69_37n	-1	putative	missense	c.443	p.P148L	0.007	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon	PRKD1	HGNC	ENSG00000184304	48	0	0	22	39	63.93	-	-	-	A	30099920	G	A	30099920	3	1	267	1	0	0	0	0	1	0	0	0	12599	1363	47	4		4	PRKD1	14	30099920	Missense_Mutation	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	5213713	30099920	77249620	21	24894										
OTUD7A	0	genome.wustl.edu	37	chr15	31822945	31822945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gtaaaaggcagttcccatccCctgttgtggccagaggaaga	12	10	0	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	15	31822945	31822945	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.617	p.G206E	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	89	0	0	54	6	10	-	-	-	T	31822945	C	T	31822945	3	4	267	1	0	0	0	0	1	0	0	0	11391	623	22	4	2195	4	OTUD7A	15	31822945	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		31822945	70708447	22	24895										
C15orf55	0	genome.wustl.edu	37	chr15	34640201	34640201	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ccgggaccggatatgagcatGaaacctagtgccgccccgtc	12	14	0	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	15	34640201	34640201	G	T	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	missense	c.48	p.M16I	0.992	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	30	0	0	13	6	31.58	-	-	-	T	34640201	G	T	34640201	3	4	267	1	0	0	0	0	1	0	0	0	1815	1290	45	2	54	2	C15orf55	15	34640201	Missense_Mutation	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09	2817256	34640201	67891191	23	24896										
PDPR	0	genome.wustl.edu	37	chr16	70176575	70176575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ttgacatgtcctctttcacaAagtttgagataacagtaagt	7	7	2	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	16	70176575	70176575	A	G	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.1591	p.K531E	1.000	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	70	0	0	36	5	12.2	-	-	-	G	70176575	A	G	70176575	3	3	267	1	0	0	0	0	1	0	0	0	11762	15	1	5	1633	5	PDPR	16	70176575	Missense_Mutation	SNP	A	TCGA-AC-A5EI-01A-11D-A27P-09		70176575	20178178	24	24897										
AIPL1	0	genome.wustl.edu	37	chr17	6337388	6337388	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	aatgactgtccgctcctcatCacatttcatggtgcggaaat	8	11	3	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	17	6337388	6337388	C	T	SNP	AIPL1	ENST00000381129	human	ensembl	69_37n	-1	known	missense	c.127	p.D43N	0.973	pfam_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	AIPL1	HGNC	ENSG00000129221	45	0	0	31	5	13.89	-	-	-	T	6337388	C	T	6337388	3	4	267	1	0	0	0	0	1	0	0	0	436	826	29	2	1047	2	AIPL1	17	6337388	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		6337388	74857822	25	24898										
NOS2	0	genome.wustl.edu	37	chr17	26116700	26116700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	ggttgtgatactgaaggtcaTcctgtgtcactggactgtga	13	7	2	3			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	17	26116700	26116700	T	C	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.125	p.D42G	1.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	47	0	0	22	5	18.52	-	-	-	C	26116700	T	C	26116700	3	2	267	1	0	0	0	0	1	0	0	0	10615	1435	50	5	3436	5	NOS2	17	26116700	Missense_Mutation	SNP	T	TCGA-AC-A5EI-01A-11D-A27P-09	19779312	26116700	55078510	26	24899										
C19orf21	0	genome.wustl.edu	37	chr19	758149	758149	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	tcagattccatcctcagcccGgccccagatgcccgtgcggc	10	18	2	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	19	758149	758149	G	A	SNP	C19orf21	ENST00000215582	human	ensembl	69_37n	1	known	silent	c.1203	p.P401	0.000	NULL	NULL	-	no_errors	C19orf21	HGNC	ENSG00000099812	56	0	0	48	23	32.39	-	-	-	A	758149	G	A	758149	2	1	267	1	0	0	0	0	0	0	0	1	1931	1103	39	1		1	C19orf21	19	758149	Silent	SNP	G	TCGA-AC-A5EI-01A-11D-A27P-09		758149	58370834	27	24900										
LRRC25	0	genome.wustl.edu	37	chr19	18507240	18507240	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	acagggccagcgatggcaagTccaagaagcaggcacccgct	13	13	0	1			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	19	18507240	18507240	T	C	SNP	LRRC25	ENST00000339007	human	ensembl	69_37n	-1	known	silent	c.534	p.G178	0.000	NULL	NULL	-	no_errors	LRRC25	HGNC	ENSG00000175489	55	0	0	51	21	29.17	-	-	-	C	18507240	T	C	18507240	2	2	267	1	0	0	0	0	0	0	0	1	9046	1654	58	5		5	LRRC25	19	18507240	Silent	SNP	T	TCGA-AC-A5EI-01A-11D-A27P-09	17749091	18507240	40621743	28	24901										
CACNG7	0	genome.wustl.edu	37	chr19	54417817	54417817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	accggagatcaatttggtgaCggaaaacacggagaatattc	11	7	1	3			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	19	54417817	54417817	C	T	SNP	CACNG7	ENST00000222212	human	ensembl	69_37n	1	known	missense	c.260	p.T87M	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605	49	0	0	25	11	30.56	-	-	-	T	54417817	C	T	54417817	3	4	267	1	0	0	0	0	1	0	0	0	2587	536	19	1	266	1	CACNG7	19	54417817	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09	35910577	54417817	4711166	29	24902										
TUBGCP6	0	genome.wustl.edu	37	chr22	50659708	50659708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	gaccaccccctgacacctgcCcaaagagccgctctgtgggc	10	18	1	2			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	22	50659708	50659708	C	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.3080	p.G1027E	0.001	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	54	0	0	43	18	29.51	-	-	-	T	50659708	C	T	50659708	3	4	267	1	0	0	0	0	1	0	0	0	16867	623	22	4	2419	4	TUBGCP6	22	50659708	Missense_Mutation	SNP	C	TCGA-AC-A5EI-01A-11D-A27P-09		50659708	644858	30	24903										
CPXCR1	0	genome.wustl.edu	37	chrX	88008507	88008507	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.353985092257315	1.85945633314054	0	2.2081043956044	0.0151515151515152	0.179340149574026	0	taatgactgtagtacagacaTagagtctccatctgctgatc	8	9	2	4			TCGA-AC-A5EI-01A-11D-A27P-09	TCGA-AC-A5EI-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbdeaaa2-efd9-4442-997d-c7353f245f66	38f6baf0-4400-4c12-8eab-3e24d38e39ec	X	88008507	88008507	T	A	SNP	CPXCR1	ENST00000276127	human	ensembl	69_37n	1	known	missense	c.92	p.I31K	0.002	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183	63	0	0	33	6	15.38	-	-	-	A	88008507	T	A	88008507	3	1	267	1	0	0	0	0	1	0	0	0	3866	1406	49	5	94	5	CPXCR1	23	88008507	Missense_Mutation	SNP	T	TCGA-AC-A5EI-01A-11D-A27P-09		88008507	67262053	31	24904										
MEGF6	0	genome.wustl.edu	37	chr1	3407145	3407145	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggtctgctggaggcgggcaGtgtgcccgctggggaaaagg	21	8	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	3407145	3407145	G	C	SNP	MEGF6	ENST00000356575	human	ensembl	69_37n	-1	known	missense	c.4573	p.L1525V	0.001	NULL	pfam_EGF_laminin,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591	79	0	0	30	12	27.91	-	-	-	C	3407145	G	C	3407145	3	2	268	1	0	0	0	0	1	0	0	0	9533	1020	36	4	56	4	MEGF6	1	3407145	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		3407145	245843476	1	24905										
LYPLA2	0	genome.wustl.edu	37	chr1	24121280	24121280	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggactcagcaagcaagcgtGgcaccatcttggatctgagc	13	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	24121280	24121280	G	A	SNP	LYPLA2	ENST00000472213	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	LYPLA2	HGNC	ENSG00000011009	47	0	0	10	13	56.52	-	-	-	A	24121280	G	A	24121280	1	1	268	0	1	0	0	0	0	0	0	0	9184	1363	47	4		4	LYPLA2	1	24121280	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	20714135	24121280	225129341	2	24906										
FAM46B	0	genome.wustl.edu	37	chr1	27333097	27333097	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaactggcgtctcaccgagtCcacaaacttgagctccacgt	8	14	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	27333097	27333097	C	G	SNP	FAM46B	ENST00000289166	human	ensembl	69_37n	-1	known	missense	c.616	p.D206H	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46B	HGNC	ENSG00000158246	42	0	0	13	5	27.78	-	-	-	G	27333097	C	G	27333097	3	3	268	1	0	0	0	0	1	0	0	0	5612	855	30	2	665	2	FAM46B	1	27333097	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3211817	27333097	221917524	3	24907										
BAI2	0	genome.wustl.edu	37	chr1	32196704	32196704	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccaccgccaggctgcaggctCaaagtccgccggggcagcac	13	17	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	32196704	32196704	C	T	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	silent	c.4077	p.L1359	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	40	0	0	35	8	18.6	-	-	-	T	32196704	C	T	32196704	2	4	268	1	0	0	0	0	0	0	0	1	1303	825	29	2		2	BAI2	1	32196704	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4863607	32196704	217053917	4	24908										
C1orf94	0	genome.wustl.edu	37	chr1	34667763	34667763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cactccacactttcctacagCcatgacctcagcaaccctga	4	18	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	34667763	34667763	C	T	SNP	C1orf94	ENST00000488417	human	ensembl	69_37n	1	known	missense	c.1349	p.A450V	0.732	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698	64	0	0	33	7	17.5	-	-	-	T	34667763	C	T	34667763	3	4	268	1	0	0	0	0	1	0	0	0	2091	739	26	4	1363	4	C1orf94	1	34667763	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2471059	34667763	214582858	5	24909										
ZMYM4	0	genome.wustl.edu	37	chr1	35871052	35871052	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgcactctctcaagaatcctCagagccaggctgtagaggta	10	11	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	35871052	35871052	C	G	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	nonsense	c.3779	p.S1260*	0.974	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	71	0	0	44	17	27.87	-	-	-	G	35871052	C	G	35871052	4	3	268	1	0	0	0	0	0	1	0	0	17798	838	29	2	3877	2	ZMYM4	1	35871052	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1203289	35871052	213379569	6	24910										
MAP7D1	0	genome.wustl.edu	37	chr1	36642137	36642137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagcgccgcaagcccaacgcCgggggcagccccgctccggt	15	18	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	36642137	36642137	C	T	SNP	MAP7D1	ENST00000373151	human	ensembl	69_37n	1	known	silent	c.1188	p.A396	0.812	NULL	pfam_E-MAP-115	-	no_errors	MAP7D1	HGNC	ENSG00000116871	8	0	0	5	4	44.44	-	-	-	T	36642137	C	T	36642137	2	4	268	1	0	0	0	0	0	0	0	1	9338	639	23	1		1	MAP7D1	1	36642137	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	771085	36642137	212608484	7	24911										
RLF	0	genome.wustl.edu	37	chr1	40704442	40704442	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agaaccaaaagggaacttgtCaaatgtaaaaagatatttgc	8	5	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	40704442	40704442	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	silent	c.4068	p.V1356	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	34	0	0	16	5	23.81	-	-	-	T	40704442	C	T	40704442	2	4	268	1	0	0	0	0	0	0	0	1	13475	813	29	2		2	RLF	1	40704442	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4062305	40704442	208546179	8	24912										
SLC6A9	0	genome.wustl.edu	37	chr1	44466611	44466611	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggccgggtcgcgggaggccgGaggctcgagtgctcaccgta	19	12	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	44466611	44466611	G	A	SNP	SLC6A9	ENST00000372306	human	ensembl	69_37n	-1	putative	silent	c.1452	p.L484	0.001	pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1,pfscan_Na/ntran_symport	-	no_errors	SLC6A9	HGNC	ENSG00000196517	38	0	0	16	14	46.67	-	-	-	A	44466611	G	A	44466611	2	1	268	1	0	0	0	0	0	0	0	1	14780	1189	41	2		2	SLC6A9	1	44466611	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3762169	44466611	204784010	9	24913										
ZCCHC11	0	genome.wustl.edu	37	chr1	52930846	52930846	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taagcacaaccttgccttttCtaagcaaaggaaaacaaagt	6	9	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	52930846	52930846	C	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	splice_site	c.2966-1	e15-1	1.000	-	-	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	29	0	0	25	5	16.67	-	-	-	T	52930846	C	T	52930846	5	4	268	1	0	0	0	0	0	0	1	0	17676	927	32	2	2032	2	ZCCHC11	1	52930846	Splice_Site	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8464235	52930846	196319775	10	24914										
OMA1	0	genome.wustl.edu	37	chr1	58946629	58946629	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atatatcttgtgtctcataaAttttaattcaactgcccgtt	4	8	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	58946629	58946629	A	C	SNP	OMA1	ENST00000476933	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.902	-	-	-	no_errors	OMA1	HGNC	ENSG00000162600	60	0	0	25	9	26.47	-	-	-	C	58946629	A	C	58946629	1	2	268	0	1	0	0	0	0	0	0	0	10937	116	4	5		5	OMA1	1	58946629	RNA	SNP	A	TCGA-AC-A5XS-01A-11D-A29N-09	6015783	58946629	190303992	11	24915										
TM2D1	0	genome.wustl.edu	37	chr1	62146817	62146817	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagagtaataagctatctctCatagagacagaagcccgaga	9	9	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	62146817	62146817	C	G	SNP	TM2D1	ENST00000472357	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.888	-	-	-	no_errors	TM2D1	HGNC	ENSG00000162604	25	0	0	27	6	18.18	-	-	-	G	62146817	C	G	62146817	1	3	268	0	1	0	0	0	0	0	0	0	16058	841	29	2		2	TM2D1	1	62146817	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3200188	62146817	187103804	12	24916										
SGIP1	0	genome.wustl.edu	37	chr1	67147978	67147978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagagcaactccacctccccCaccaccacccacctacagga	4	21	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	67147978	67147978	C	T	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.1253	p.P418L	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	28	0	0	13	7	35	-	-	-	T	67147978	C	T	67147978	3	4	268	1	0	0	0	0	1	0	0	0	14294	594	21	4	1299	4	SGIP1	1	67147978	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5001161	67147978	182102643	13	24917										
LRRC7	0	genome.wustl.edu	37	chr1	70486741	70486741	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cactgtgggaagagcagagaCaacaacgcatgactgttgcc	12	10	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	70486741	70486741	C	G	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.1360	p.Q454E	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	57	0	0	34	14	29.17	-	-	-	G	70486741	C	G	70486741	3	3	268	1	0	0	0	0	1	0	0	0	9086	479	17	4	1414	4	LRRC7	1	70486741	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3338763	70486741	178763880	14	24918										
HHLA3	0	genome.wustl.edu	37	chr1	70820799	70820799	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctacttcgtgccgtatgtacGaagctagcaaatatgtacag	9	9	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	1	70820799	70820799	G	A	SNP	HHLA3	ENST00000432224	human	ensembl	69_37n	1	known	silent	c.165	p.T55	0.000	NULL	NULL	-	no_errors	HHLA3	HGNC	ENSG00000197568	65	0	0	35	6	14.63	-	-	-	A	70820799	G	A	70820799	2	1	268	1	0	0	0	0	0	0	0	1	7147	1045	37	1		1	HHLA3	1	70820799	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	334058	70820799	178429822	15	24919										
ZZZ3	0	genome.wustl.edu	37	chr1	78097974	78097974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaaacacagtctagaacagGagatggttcaggttctccgg	12	8	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	78097974	78097974	G	A	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	missense	c.1066	p.P356S	0.983	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	56	0	0	37	9	19.57	-	-	-	A	78097974	G	A	78097974	3	1	268	1	0	0	0	0	1	0	0	0	18347	1174	41	2	1689	2	ZZZ3	1	78097974	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	7277175	78097974	171152647	16	24920										
IFI44	0	genome.wustl.edu	37	chr1	79120818	79120818	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaagtccagctttttcaactCagtgaggtctgttttccaag	9	9	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	79120818	79120818	C	A	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	nonsense	c.614	p.S205*	1.000	NULL	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	74	0	0	34	13	27.08	-	-	-	A	79120818	C	A	79120818	4	1	268	1	0	0	0	0	0	1	0	0	7571	838	29	2	624	2	IFI44	1	79120818	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1022844	79120818	170129803	17	24921										
TTLL7	0	genome.wustl.edu	37	chr1	84386979	84386979	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtctctgctgttcccagtctGaggagcctggtaagagcctt	12	11	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	84386979	84386979	G	A	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.1241	p.S414L	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	103	0	0	51	15	22.73	-	-	-	A	84386979	G	A	84386979	3	1	268	1	0	0	0	0	1	0	0	0	16829	1294	45	2	1466	2	TTLL7	1	84386979	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5266161	84386979	164863642	18	24922										
MCOLN3	0	genome.wustl.edu	37	chr1	85491960	85491960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcatcatgtaatgagtgttCttctgaactgaaagcaaaga	8	6	4	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	85491960	85491960	C	G	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.840	p.K280N	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	27	0	0	19	11	36.67	-	-	-	G	85491960	C	G	85491960	3	3	268	1	0	0	0	0	1	0	0	0	9468	912	32	2	845	2	MCOLN3	1	85491960	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1104981	85491960	163758661	19	24923										
ZNF644	0	genome.wustl.edu	37	chr1	91383780	91383780	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atacatacacacatatttttCtagagaggtcagacagacca	6	9	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	1	91383780	91383780	C	T	SNP	ZNF644	ENST00000482709	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482	20	0	0	10	5	33.33	-	-	-	T	91383780	C	T	91383780	1	4	268	0	1	0	0	0	0	0	0	0	18156	928	32	2		2	ZNF644	1	91383780	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5891820	91383780	157866841	20	24924										
EVI5	0	genome.wustl.edu	37	chr1	93029229	93029229	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agctctgctatctgatctttCagttccccaatatactggtt	6	11	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	93029229	93029229	C	T	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	silent	c.2121	p.L707	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	49	0	0	29	9	23.68	-	-	-	T	93029229	C	T	93029229	2	4	268	1	0	0	0	0	0	0	0	1	5326	813	29	2		2	EVI5	1	93029229	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1645449	93029229	156221392	21	24925										
PTBP2	0	genome.wustl.edu	37	chr1	97243418	97243418	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctaagtttggtgctgtattGaagataatcacatttacaaa	7	5	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	97243418	97243418	G	A	SNP	PTBP2	ENST00000394184	human	ensembl	69_37n	1	known	silent	c.657	p.L219	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP2	HGNC	ENSG00000117569	63	0	0	35	7	16.67	-	-	-	A	97243418	G	A	97243418	2	1	268	1	0	0	0	0	0	0	0	1	12806	1281	45	2		2	PTBP2	1	97243418	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4214189	97243418	152007203	22	24926										
ATXN7L2	0	genome.wustl.edu	37	chr1	110032907	110032907	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttagttctgcacctttggGagccggctggtgagcccagg	14	11	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	110032907	110032907	G	T	SNP	ATXN7L2	ENST00000369870	human	ensembl	69_37n	1	known	silent	c.1251	p.G417	0.995	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	24	0	0	18	8	30.77	-	-	-	T	110032907	G	T	110032907	2	4	268	1	0	0	0	0	0	0	0	1	1221	1161	41	2		2	ATXN7L2	1	110032907	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	12789489	110032907	139217714	23	24927										
GNAT2	0	genome.wustl.edu	37	chr1	110155435	110155435	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcctcctgcagcttcttttCtagctccttggacctcttgg	7	14	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	110155435	110155435	C	A	SNP	GNAT2	ENST00000351050	human	ensembl	69_37n	-1	known	nonsense	c.58	p.E20*	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT2	HGNC	ENSG00000134183	123	0	0	99	23	18.85	-	-	-	A	110155435	C	A	110155435	4	1	268	1	0	0	0	0	0	1	0	0	6564	922	32	2	1038	2	GNAT2	1	110155435	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	122528	110155435	139095186	24	24928										
MOV10	0	genome.wustl.edu	37	chr1	113242848	113242848	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgtaccccacagattcctgGagttctgtaaagaaaacgga	9	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	113242848	113242848	G	C	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.2806	p.E936Q	1.000	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	51	0	0	61	13	17.57	-	-	-	C	113242848	G	C	113242848	3	2	268	1	0	0	0	0	1	0	0	0	9790	1175	41	2	2880	2	MOV10	1	113242848	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3087413	113242848	136007773	25	24929										
BCAS2	0	genome.wustl.edu	37	chr1	115124173	115124173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcaaaatacggcagcgcatCcaccacaacctctccagcca	5	17	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	115124173	115124173	C	T	SNP	BCAS2	ENST00000369541	human	ensembl	69_37n	-1	known	missense	c.40	p.D14N	1.000	pfam_BCAS2	pfam_BCAS2	-	no_errors	BCAS2	HGNC	ENSG00000116752	37	0	0	56	8	12.5	-	-	-	T	115124173	C	T	115124173	3	4	268	1	0	0	0	0	1	0	0	0	1355	855	30	2	665	2	BCAS2	1	115124173	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1881325	115124173	134126448	26	24930										
HIST2H2BE	0	genome.wustl.edu	37	chr1	149857928	149857928	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctcgcgggatgtgatggtgGagcgcttgttgtagtgcgcc	17	8	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	149857928	149857928	G	C	SNP	HIST2H2BE	ENST00000369155	human	ensembl	69_37n	-1	known	missense	c.263	p.S88C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	105	0	0	113	25	17.99	-	-	-	C	149857928	G	C	149857928	3	2	268	1	0	0	0	0	1	0	0	0	7230	1174	41	2	121	2	HIST2H2BE	1	149857928	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	34733755	149857928	99392693	27	24931										
TARS2	0	genome.wustl.edu	37	chr1	150461672	150461672	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtttctccatttgcagttggGagggagacctaccacagact	11	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	150461672	150461672	G	C	SNP	TARS2	ENST00000369053	human	ensembl	69_37n	1	known	missense	c.496	p.E166Q	0.000	NULL	pfam_TGS,superfamily_TGS-like	-	no_errors	TARS2	HGNC	ENSG00000143374	62	0	0	58	17	22.67	-	-	-	C	150461672	G	C	150461672	3	2	268	1	0	0	0	0	1	0	0	0	15652	1189	41	2		2	TARS2	1	150461672	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	603744	150461672	98788949	28	24932										
HORMAD1	0	genome.wustl.edu	37	chr1	150671188	150671188	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttggcactgactcttgactaGaagaatcaaagtgatggagg	12	6	2	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	150671188	150671188	G	C	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	missense	c.1127	p.S376C	0.804	NULL	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	49	0	0	49	7	12.5	-	-	-	C	150671188	G	C	150671188	3	2	268	1	0	0	0	0	1	0	0	0	7337	942	33	2	61	2	HORMAD1	1	150671188	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	209516	150671188	98579433	29	24933										
FLG	0	genome.wustl.edu	37	chr1	152278088	152278088	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggagctgtcttgtgcctgctCatggcgggatccttgtcttc	13	11	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	152278088	152278088	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.9274	p.E3092K	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	147	0	0	127	27	17.53	-	-	-	T	152278088	C	T	152278088	3	4	268	1	0	0	0	0	1	0	0	0	5968	835	29	2	2915	2	FLG	1	152278088	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1606900	152278088	96972533	30	24934										
PGLYRP3	0	genome.wustl.edu	37	chr1	153276357	153276357	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctgggcatcactggatgttGagggtccaggcaggtctctt	14	10	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	153276357	153276357	G	C	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	missense	c.505	p.Q169E	0.030	pfam_Amidase_domain,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	97	0	0	71	16	18.39	-	-	-	C	153276357	G	C	153276357	3	2	268	1	0	0	0	0	1	0	0	0	11869	1299	45	2	536	2	PGLYRP3	1	153276357	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	998269	153276357	95974264	31	24935										
SNAPIN	0	genome.wustl.edu	37	chr1	153631470	153631470	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taaatttaggaaactgattcGaggcggggaggacaggcggg	17	5	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	153631470	153631470	G	C	SNP	SNAPIN	ENST00000474959	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNAPIN	HGNC	ENSG00000143553	62	0	0	36	12	25	-	-	-	C	153631470	G	C	153631470	1	2	268	0	1	0	0	0	0	0	0	0	14928	1073	37	3		3	SNAPIN	1	153631470	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	355113	153631470	95619151	32	24936										
EFNA1	0	genome.wustl.edu	37	chr1	155103876	155103876	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actacgtggacatcatctgtCcgcactatgaagatcactct	7	12	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	155103876	155103876	C	G	SNP	EFNA1	ENST00000368407	human	ensembl	69_37n	1	known	missense	c.154	p.P52A	1.000	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA1	HGNC	ENSG00000169242	37	0	0	26	7	21.21	-	-	-	G	155103876	C	G	155103876	3	3	268	1	0	0	0	0	1	0	0	0	4985	855	30	2	160	2	EFNA1	1	155103876	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1472406	155103876	94146745	33	24937										
DPM3	0	genome.wustl.edu	37	chr1	155112728	155112728	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttcgtcatggtcactgcgaGagaaggaagcaatgctcccc	11	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	155112728	155112728	G	C	SNP	DPM3	ENST00000368399	human	ensembl	69_37n	-1	known	missense	c.79	p.L27V	0.196	NULL	pfam_DPM3	-	no_errors	DPM3	HGNC	ENSG00000179085	34	0	0	32	7	17.95	-	-	-	C	155112728	G	C	155112728	3	2	268	1	0	0	0	0	1	0	0	0	4761	942	33	2	293	2	DPM3	1	155112728	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8852	155112728	94137893	34	24938										
GON4L	0	genome.wustl.edu	37	chr1	155774755	155774755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttaccttcattccccacatCatcattcataagtcccccca	1	18	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	155774755	155774755	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.1630	p.D544N	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	69	0	0	45	11	19.64	-	-	-	T	155774755	C	T	155774755	3	4	268	1	0	0	0	0	1	0	0	0	6621	826	29	2	5297	2	GON4L	1	155774755	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	662027	155774755	93475866	35	24939										
KIRREL	0	genome.wustl.edu	37	chr1	158063196	158063196	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcctgctcatcttcttcttCatcgccttggtattcttcct	4	14	6	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	158063196	158063196	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	silent	c.1587	p.F529	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	63	0	0	43	6	12.24	-	-	-	T	158063196	C	T	158063196	2	4	268	1	0	0	0	0	0	0	0	1	8377	825	29	2		2	KIRREL	1	158063196	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2288441	158063196	91187425	36	24940										
CD1B	0	genome.wustl.edu	37	chr1	158301159	158301159	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agagtgactcttaccatgttCactgttaccaccaggaaaga	8	10	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	158301159	158301159	C	T	SNP	CD1B	ENST00000368168	human	ensembl	69_37n	-1	known	missense	c.55	p.E19K	0.003	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1B	HGNC	ENSG00000158485	62	0	0	37	14	26.92	-	-	-	T	158301159	C	T	158301159	3	4	268	1	0	0	0	0	1	0	0	0	3004	835	29	2	970	2	CD1B	1	158301159	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	237963	158301159	90949462	37	24941										
CADM3	0	genome.wustl.edu	37	chr1	159166750	159166750	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atgacccaggagagtgccctGatcttccctttcctcaacaa	7	14	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	159166750	159166750	G	A	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	1	known	silent	c.954	p.L318	0.991	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	52	0	0	22	6	21.43	-	-	-	A	159166750	G	A	159166750	2	1	268	1	0	0	0	0	0	0	0	1	2593	1277	45	2		2	CADM3	1	159166750	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	865591	159166750	90083871	38	24942										
COPA	0	genome.wustl.edu	37	chr1	160267442	160267442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtacgctgatagcacatttCcacaatctggtggttcccct	9	12	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	160267442	160267442	C	T	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.2098	p.E700K	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	38	0	0	23	6	20.69	-	-	-	T	160267442	C	T	160267442	3	4	268	1	0	0	0	0	1	0	0	0	3757	864	30	2	1659	2	COPA	1	160267442	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1100692	160267442	88983179	39	24943										
ARHGAP30	0	genome.wustl.edu	37	chr1	161017609	161017609	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggggttctctggggggcaGactaagacgactccgggatc	16	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	161017609	161017609	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	silent	c.3202	p.L1068	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	20	0	0	20	7	25.93	-	-	-	A	161017609	G	A	161017609	2	1	268	1	0	0	0	0	0	0	0	1	881	933	33	2		2	ARHGAP30	1	161017609	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	750167	161017609	88233012	40	24944										
NOS1AP	0	genome.wustl.edu	37	chr1	162330676	162330676	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctactccctaacttcagcctGgccctgccctcacttctgat	5	18	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	162330676	162330676	G	A	SNP	NOS1AP	ENST00000430120	human	ensembl	69_37n	1	known	silent	c.999	p.L333	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	104	0	0	80	11	12.09	-	-	-	A	162330676	G	A	162330676	2	1	268	1	0	0	0	0	0	0	0	1	10614	1363	47	4		4	NOS1AP	1	162330676	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1313067	162330676	86919945	41	24945										
ATP1B1	0	genome.wustl.edu	37	chr1	169096637	169096637	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcaaccgagttctaggcttCaaacctaaggcaagtaatat	7	10	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	169096637	169096637	C	T	SNP	ATP1B1	ENST00000367815	human	ensembl	69_37n	1	known	silent	c.558	p.F186	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	39	0	0	41	11	21.15	-	-	-	T	169096637	C	T	169096637	2	4	268	1	0	0	0	0	0	0	0	1	1136	825	29	2		2	ATP1B1	1	169096637	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6765961	169096637	80153984	42	24946										
PIGC	0	genome.wustl.edu	37	chr1	172413028	172413028	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttggctttttgggtgggcctCccacttccgccgccgcccct	11	17	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	172413028	172413028	C	T	SNP	PIGC	ENST00000478184	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PIGC	HGNC	ENSG00000135845	27	0	0	50	6	10.71	-	-	-	T	172413028	C	T	172413028	1	4	268	0	1	0	0	0	0	0	0	0	11960	870	30	2		2	PIGC	1	172413028	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3316391	172413028	76837593	43	24947										
PAPPA2	0	genome.wustl.edu	37	chr1	176738742	176738742	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagcaatttctctgtttctaGaaggaaattctgctcacatg	7	8	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	176738742	176738742	G	C	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	splice_site	c.4324-1	e15-1	1.000	-	-	-	no_errors	PAPPA2	HGNC	ENSG00000116183	48	0	0	35	10	22.22	-	-	-	C	176738742	G	C	176738742	5	2	268	1	0	0	0	0	0	0	1	0	11506	956	33	2	4434	2	PAPPA2	1	176738742	Splice_Site	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4325714	176738742	72511879	44	24948										
ASTN1	0	genome.wustl.edu	37	chr1	176926845	176926845	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggagtccagcttgcgatctGaaatacagcggaaattctta	10	8	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	176926845	176926845	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1880	p.S627L	1.000	smart_EGF-like	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	40	0	0	41	9	17.65	-	-	-	A	176926845	G	A	176926845	3	1	268	1	0	0	0	0	1	0	0	0	1068	1294	45	2	2084	2	ASTN1	1	176926845	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	188103	176926845	72323776	45	24949										
RASAL2	0	genome.wustl.edu	37	chr1	178427263	178427263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctctatagattccagtttgGagaacctaagcactgccagt	8	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	178427263	178427263	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.2836	p.E946K	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	32	0	0	21	12	36.36	-	-	-	A	178427263	G	A	178427263	3	1	268	1	0	0	0	0	1	0	0	0	13147	1175	41	2	2928	2	RASAL2	1	178427263	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1500418	178427263	70823358	46	24950										
ZNF648	0	genome.wustl.edu	37	chr1	182025764	182025764	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctggtggcgcacgaggcgcGagggctgcgcgaaggccacg	20	12	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	182025764	182025764	G	T	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	nonsense	c.1382	p.S461*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	35	0	0	28	5	15.15	-	-	-	T	182025764	G	T	182025764	4	4	268	1	0	0	0	0	0	1	0	0	18159	1059	37	3	328	3	ZNF648	1	182025764	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3598501	182025764	67224857	47	24951										
LAMC1	0	genome.wustl.edu	37	chr1	183106909	183106909	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aactgcaggaagcagaaaaaGagctaaagagaaaacaagat	10	5	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	183106909	183106909	G	C	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.4420	p.E1474Q	0.999	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	38	0	0	42	6	12.5	-	-	-	C	183106909	G	C	183106909	3	2	268	1	0	0	0	0	1	0	0	0	8668	943	33	2	4522	2	LAMC1	1	183106909	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1081145	183106909	66143712	48	24952										
HMCN1	0	genome.wustl.edu	37	chr1	185969325	185969325	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagtacatctgtgtggcagtCaatgaagctggaaccacaga	12	8	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	185969325	185969325	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.4023	p.V1341	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	41	0	0	42	10	19.23	-	-	-	T	185969325	C	T	185969325	2	4	268	1	0	0	0	0	0	0	0	1	7271	813	29	2		2	HMCN1	1	185969325	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2862416	185969325	63281296	49	24953										
HMCN1	0	genome.wustl.edu	37	chr1	186158822	186158822	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caactttcctcatggtagatGaggaacagactgttcctttt	8	9	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	186158822	186158822	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.16720	p.E5574K	1.000	superfamily_Cadherin-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	45	0	0	54	9	14.29	-	-	-	A	186158822	G	A	186158822	3	1	268	1	0	0	0	0	1	0	0	0	7271	1291	45	2	17146	2	HMCN1	1	186158822	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	189497	186158822	63091799	50	24954										
CSRP1	0	genome.wustl.edu	37	chr1	201458006	201458006	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cccagcaccaatcaccttctCcgcagcatagactgcctggc	7	18	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	201458006	201458006	C	A	SNP	CSRP1	ENST00000340006	human	ensembl	69_37n	-1	known	nonsense	c.388	p.E130*	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CSRP1	HGNC	ENSG00000159176	51	0	0	50	12	19.35	-	-	-	A	201458006	C	A	201458006	4	1	268	1	0	0	0	0	0	1	0	0	3998	864	30	2	221	2	CSRP1	1	201458006	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	15299184	201458006	47792615	51	24955										
UBE2T	0	genome.wustl.edu	37	chr1	202302593	202302593	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcacttttggtggcaatttGagaacatccagacaaatcct	7	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	202302593	202302593	G	A	SNP	UBE2T	ENST00000367274	human	ensembl	69_37n	-1	known	silent	c.270	p.L90	0.998	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152	30	0	0	27	11	28.95	-	-	-	A	202302593	G	A	202302593	2	1	268	1	0	0	0	0	0	0	0	1	16970	1277	45	2		2	UBE2T	1	202302593	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	844587	202302593	46948028	52	24956										
KDM5B	0	genome.wustl.edu	37	chr1	202715442	202715442	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaaatccattctttccgaatCaatcactccctagaataaag	3	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	202715442	202715442	C	T	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.2026	p.D676N	0.994	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	28	0	0	28	6	17.65	-	-	-	T	202715442	C	T	202715442	3	4	268	1	0	0	0	0	1	0	0	0	8187	826	29	2	2660	2	KDM5B	1	202715442	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	412849	202715442	46535179	53	24957										
ATP2B4	0	genome.wustl.edu	37	chr1	203691759	203691759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggagagaagaacgtcttttCaggcatctaccgcaacatta	9	9	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	203691759	203691759	C	T	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.2966	p.S989L	0.930	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	58	0	0	50	12	19.35	-	-	-	T	203691759	C	T	203691759	3	4	268	1	0	0	0	0	1	0	0	0	1146	838	29	2	3032	2	ATP2B4	1	203691759	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	976317	203691759	45558862	54	24958										
PIK3C2B	0	genome.wustl.edu	37	chr1	204411714	204411714	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggcaagcggcacgagccattGagggcaaagaactgcttcac	13	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	204411714	204411714	G	C	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.3096	p.L1032	0.980	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	40	0	0	36	5	12.2	-	-	-	C	204411714	G	C	204411714	2	2	268	1	0	0	0	0	0	0	0	1	11984	1277	45	2		2	PIK3C2B	1	204411714	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	719955	204411714	44838907	55	24959										
MIA3	0	genome.wustl.edu	37	chr1	222803038	222803038	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agaaagcacagagaccatttGaacgaagtgacttttctgac	9	8	1	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	222803038	222803038	G	C	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.2476	p.E826Q	0.003	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	29	0	0	39	6	13.33	-	-	-	C	222803038	G	C	222803038	3	2	268	1	0	0	0	0	1	0	0	0	9636	1291	45	2	2490	2	MIA3	1	222803038	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	18391324	222803038	26447583	56	24960										
MIA3	0	genome.wustl.edu	37	chr1	222825379	222825379	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttatttcaatgaatgcctcaGaattttcagaggtaaagctg	8	6	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	222825379	222825379	G	A	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.3970	p.E1324K	0.998	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	43	0	0	42	11	20.75	-	-	-	A	222825379	G	A	222825379	3	1	268	1	0	0	0	0	1	0	0	0	9636	943	33	2	4016	2	MIA3	1	222825379	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	22341	222825379	26425242	57	24961										
SNAP47	0	genome.wustl.edu	37	chr1	227968278	227968278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaggccgagagtgagctggaGagacaagacgaagccctgga	17	8	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	227968278	227968278	G	C	SNP	SNAP47	ENST00000366759	human	ensembl	69_37n	1	known	missense	c.1299	p.E433D	0.998	pfscan_T_SNARE_dom	pfscan_T_SNARE_dom	-	no_errors	SNAP47	HGNC	ENSG00000143740	60	0	0	67	11	14.1	-	-	-	C	227968278	G	C	227968278	3	2	268	1	0	0	0	0	1	0	0	0	14921	933	33	2	1317	2	SNAP47	1	227968278	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5142899	227968278	21282343	58	24962										
TAF5L	0	genome.wustl.edu	37	chr1	229738235	229738235	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagaatagggctgggcatgtCggggggctccaaaccgttgt	16	9	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	229738235	229738235	C	G	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	missense	c.679	p.D227H	0.997	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	57	0	0	37	8	17.78	-	-	-	G	229738235	C	G	229738235	3	3	268	1	0	0	0	0	1	0	0	0	15621	884	31	3	1104	3	TAF5L	1	229738235	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1769957	229738235	19512386	59	24963										
DISC1	0	genome.wustl.edu	37	chr1	231935862	231935862	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctctccccctaggtgtgtatGagtgagaaattctgcagcac	10	11	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	231935862	231935862	G	C	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	missense	c.1698	p.M566I	0.911	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	56	0	0	65	14	17.72	-	-	-	C	231935862	G	C	231935862	3	2	268	1	0	0	0	0	1	0	0	0	4574	1290	45	2	2101	2	DISC1	1	231935862	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2197627	231935862	17314759	60	24964										
TARBP1	0	genome.wustl.edu	37	chr1	234529421	234529421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggtcggtttgtcgatgagcGaggccacaacgatgagtcta	14	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	234529421	234529421	G	A	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.4406	p.S1469L	1.000	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	39	0	0	55	9	14.06	-	-	-	A	234529421	G	A	234529421	3	1	268	1	0	0	0	0	1	0	0	0	15647	1059	37	1	475	1	TARBP1	1	234529421	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2593559	234529421	14721200	61	24965										
HEATR1	0	genome.wustl.edu	37	chr1	236734734	236734734	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgaaaggcggatgcactgaaCtatcaactccacgttgaact	9	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	236734734	236734734	C	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.3865	p.V1289L	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	31	0	0	31	7	18.42	-	-	-	G	236734734	C	G	236734734	3	3	268	1	0	0	0	0	1	0	0	0	7078	565	20	4	2641	4	HEATR1	1	236734734	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2205313	236734734	12515887	62	24966										
HEATR1	0	genome.wustl.edu	37	chr1	236759077	236759077	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcttacaaaaaaaaattattCaaaataattttattcacctc	0	7	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	236759077	236759077	C	T	SNP	HEATR1	ENST00000483073	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HEATR1	HGNC	ENSG00000119285	33	0	0	33	8	19.51	-	-	-	T	236759077	C	T	236759077	1	4	268	0	1	0	0	0	0	0	0	0	7078	841	29	2		2	HEATR1	1	236759077	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	24343	236759077	12491544	63	24967										
RYR2	0	genome.wustl.edu	37	chr1	237948218	237948218	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cataatccaaatgctgggctCagtgacctcatgagcaaccc	8	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	237948218	237948218	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.13224	p.L4408	0.975	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	50	0	0	39	10	20.41	-	-	-	T	237948218	C	T	237948218	2	4	268	1	0	0	0	0	0	0	0	1	13855	813	29	2		2	RYR2	1	237948218	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1189141	237948218	11302403	64	24968										
FMN2	0	genome.wustl.edu	37	chr1	240286597	240286597	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttccttttagtgattgcttCagggaaccgtgtaatcagaa	9	8	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	240286597	240286597	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.1734	p.F578	1.000	pfscan_DEP_dom	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	102	0	0	92	21	18.58	-	-	-	T	240286597	C	T	240286597	2	4	268	1	0	0	0	0	0	0	0	1	5996	825	29	2		2	FMN2	1	240286597	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2338379	240286597	8964024	65	24969										
CEP170	0	genome.wustl.edu	37	chr1	243327808	243327808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagtcgtgttctacgaggctGagccaataaatcaatccgag	10	9	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	243327808	243327808	G	C	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.3454	p.Q1152E	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	53	0	0	53	8	13.11	-	-	-	C	243327808	G	C	243327808	3	2	268	1	0	0	0	0	1	0	0	0	3279	1299	45	2	1362	2	CEP170	1	243327808	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3041211	243327808	5922813	66	24970										
OR2L8	0	genome.wustl.edu	37	chr1	248112682	248112682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccgatccagggccatcaatCatttcttctgtgatgtccca	8	13	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	248112682	248112682	C	G	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	missense	c.523	p.H175D	0.512	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	112	0	0	135	19	12.34	-	-	-	G	248112682	C	G	248112682	3	3	268	1	0	0	0	0	1	0	0	0	11082	826	29	2	525	2	OR2L8	1	248112682	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4784874	248112682	1137939	67	24971										
OR2T6	0	genome.wustl.edu	37	chr1	248551533	248551533	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgctgcgttgcaatgctgctGatccccttctcggtggtgac	12	12	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	248551533	248551533	G	C	SNP	OR2T6	ENST00000355728	human	ensembl	69_37n	1	known	silent	c.624	p.L208	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T6	HGNC	ENSG00000198104	120	0	0	142	21	12.88	-	-	-	C	248551533	G	C	248551533	2	2	268	1	0	0	0	0	0	0	0	1	11102	1277	45	2		2	OR2T6	1	248551533	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	438851	248551533	699088	68	24972										
ZNF672	0	genome.wustl.edu	37	chr1	249142293	249142293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gttccacgctgctgcgccatCggcgcagccatcagggcgag	14	15	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	1	249142293	249142293	C	T	SNP	ZNF672	ENST00000306562	human	ensembl	69_37n	1	known	missense	c.820	p.R274W	0.337	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161	18	0	0	9	4	30.77	-	-	-	T	249142293	C	T	249142293	3	4	268	1	0	0	0	0	1	0	0	0	18175	875	31	1	822	1	ZNF672	1	249142293	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	590760	249142293	108328	69	24973										
CYS1	0	genome.wustl.edu	37	chr2	10199055	10199055	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taggagatggctgccggcctCtcgggcttcttgcgaccgct	14	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	10199055	10199055	C	T	SNP	CYS1	ENST00000381813	human	ensembl	69_37n	-1	known	silent	c.402	p.E134	0.001	NULL	NULL	-	no_errors	CYS1	HGNC	ENSG00000205795	73	0	0	42	21	33.33	-	-	-	T	10199055	C	T	10199055	2	4	268	1	0	0	0	0	0	0	0	1	4231	912	32	2		2	CYS1	2	10199055	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		10199055	233000318	70	24974										
NRBP1	0	genome.wustl.edu	37	chr2	27657374	27657374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aatacatgtcatctgggagtCtgaagcaatttctgaagaag	10	6	4	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	27657374	27657374	C	G	SNP	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	missense	c.472	p.L158V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	57	0	0	36	10	21.74	-	-	-	G	27657374	C	G	27657374	3	3	268	1	0	0	0	0	1	0	0	0	10715	912	32	2	486	2	NRBP1	2	27657374	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	17458319	27657374	215541999	71	24975										
C2orf71	0	genome.wustl.edu	37	chr2	29296409	29296409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttcctgcaggagcacttctCcatccttggagatctccccc	7	17	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	29296409	29296409	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.719	p.G240E	1.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	56	0	0	35	11	23.91	-	-	-	T	29296409	C	T	29296409	3	4	268	1	0	0	0	0	1	0	0	0	2211	855	30	2	3155	2	C2orf71	2	29296409	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1639035	29296409	213902964	72	24976										
FOXN2	0	genome.wustl.edu	37	chr2	48573479	48573479	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctgttgatgctgccaggccGaaggccactctagtggacag	14	11	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	48573479	48573479	G	A	SNP	FOXN2	ENST00000340553	human	ensembl	69_37n	1	known	silent	c.126	p.P42	0.987	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802	29	0	0	18	7	28	-	-	-	A	48573479	G	A	48573479	2	1	268	1	0	0	0	0	0	0	0	1	6068	1045	37	1		1	FOXN2	2	48573479	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	19277070	48573479	194625894	73	24977										
SPTBN1	0	genome.wustl.edu	37	chr2	54856887	54856887	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gacgagaaggagcagtggctCaacaacatgcagatcccaga	12	10	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	54856887	54856887	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	silent	c.2616	p.L872	0.976	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	36	0	0	24	6	20	-	-	-	T	54856887	C	T	54856887	2	4	268	1	0	0	0	0	0	0	0	1	15210	813	29	2		2	SPTBN1	2	54856887	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6283408	54856887	188342486	74	24978										
CD207	0	genome.wustl.edu	37	chr2	71062733	71062733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agatggaccggacttgggagGaggctctgttggaagaagaa	17	5	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	71062733	71062733	G	A	SNP	CD207	ENST00000410009	human	ensembl	69_37n	-1	known	missense	c.79	p.P27S	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD207	HGNC	ENSG00000116031	80	0	0	43	13	23.21	-	-	-	A	71062733	G	A	71062733	3	1	268	1	0	0	0	0	1	0	0	0	3012	1174	41	2	927	2	CD207	2	71062733	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	16205846	71062733	172136640	75	24979										
MAT2A	0	genome.wustl.edu	37	chr2	85768262	85768262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atgcccaccttcagcaggatCctgatgccaaagtagcttgt	9	12	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	85768262	85768262	C	T	SNP	MAT2A	ENST00000306434	human	ensembl	69_37n	1	known	missense	c.148	p.P50S	1.000	pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906	55	0	0	37	9	19.57	-	-	-	T	85768262	C	T	85768262	3	4	268	1	0	0	0	0	1	0	0	0	9401	855	30	2	154	2	MAT2A	2	85768262	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	14705529	85768262	157431111	76	24980										
FAHD2A	0	genome.wustl.edu	37	chr2	96072859	96072859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttcagcaagtttgccagctCcatcgtggggccctatgatg	11	12	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	96072859	96072859	C	T	SNP	FAHD2A	ENST00000233379	human	ensembl	69_37n	1	known	missense	c.416	p.S139F	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042	104	0	0	75	20	21.05	-	-	-	T	96072859	C	T	96072859	3	4	268	1	0	0	0	0	1	0	0	0	5413	855	30	2	422	2	FAHD2A	2	96072859	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10304597	96072859	147126514	77	24981										
SNRNP200	0	genome.wustl.edu	37	chr2	96959226	96959226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taagacaggacctctgtcatCgtggagaagatgaatctcat	10	8	3	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	96959226	96959226	C	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.1864	p.D622N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	72	0	0	33	6	15.38	-	-	-	T	96959226	C	T	96959226	3	4	268	1	0	0	0	0	1	0	0	0	14941	884	31	1	4670	1	SNRNP200	2	96959226	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	886367	96959226	146240147	78	24982										
ANKRD36	0	genome.wustl.edu	37	chr2	97911164	97911164	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caacgctccgttccaaactgGagaagcaaagagagagcagg	12	10	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	97911164	97911164	G	C	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.4840	p.E1614Q	0.989	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	123	0	0	91	18	16.51	-	-	-	C	97911164	G	C	97911164	3	2	268	1	0	0	0	0	1	0	0	0	664	1175	41	2	5122	2	ANKRD36	2	97911164	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	951938	97911164	145288209	79	24983										
VWA3B	0	genome.wustl.edu	37	chr2	98750312	98750312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acgcatttgccgagagaacaGagtgtgtagaatttcctgca	11	8	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	98750312	98750312	G	C	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	missense	c.898	p.E300Q	0.653	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	51	0	0	26	13	32.5	-	-	-	C	98750312	G	C	98750312	3	2	268	1	0	0	0	0	1	0	0	0	17338	943	33	2	920	2	VWA3B	2	98750312	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	839148	98750312	144449061	80	24984										
SULT1C3	0	genome.wustl.edu	37	chr2	108881454	108881454	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cactccatctccccttttatGaggaaaggtagataagcttt	7	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	108881454	108881454	G	A	SNP	SULT1C3	ENST00000329106	human	ensembl	69_37n	1	known	missense	c.795	p.M265I	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1C3	HGNC	ENSG00000196228	27	0	0	24	4	14.29	-	-	-	A	108881454	G	A	108881454	3	1	268	1	0	0	0	0	1	0	0	0	15469	1290	45	2	817	2	SULT1C3	2	108881454	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10131142	108881454	134317919	81	24985										
MYO7B	0	genome.wustl.edu	37	chr2	128384592	128384592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcacaccactggccgtgcgaGagcaggtggtggacgccgcc	15	14	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	128384592	128384592	G	C	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.4180	p.E1394Q	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	59	0	0	22	15	40.54	-	-	-	C	128384592	G	C	128384592	3	2	268	1	0	0	0	0	1	0	0	0	10155	943	33	2	4298	2	MYO7B	2	128384592	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	19503138	128384592	114814781	82	24986										
LRP1B	0	genome.wustl.edu	37	chr2	141474303	141474303	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttcccaagccattggtaatGatatcttctttccaagtctg	6	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	141474303	141474303	G	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.5841	p.I1947M	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	71	0	0	32	11	25.58	-	-	-	C	141474303	G	C	141474303	3	2	268	1	0	0	0	0	1	0	0	0	9021	1280	45	2	8182	2	LRP1B	2	141474303	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	13089711	141474303	101725070	83	24987										
TNFAIP6	0	genome.wustl.edu	37	chr2	152220570	152220570	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccatctcgcaacttacaagCagctagaggcagccagaaaa	9	12	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	152220570	152220570	C	T	SNP	TNFAIP6	ENST00000243347	human	ensembl	69_37n	1	known	nonsense	c.208	p.Q70*	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_CUB,pfam_Link,superfamily_CUB,superfamily_C-type_lectin_fold,smart_Link,smart_CUB,pfscan_CUB,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	34	0	0	23	8	25.81	-	-	-	T	152220570	C	T	152220570	4	4	268	1	0	0	0	0	0	1	0	0	16370	711	25	4	214	4	TNFAIP6	2	152220570	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10746267	152220570	90978803	84	24988										
PKP4	0	genome.wustl.edu	37	chr2	159481554	159481554	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgaccgacccccgacctctGaaccccagtgcatattcctc	7	18	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	159481554	159481554	G	A	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	silent	c.768	p.L256	0.998	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	35	0	0	21	10	32.26	-	-	-	A	159481554	G	A	159481554	2	1	268	1	0	0	0	0	0	0	0	1	12061	1277	45	2		2	PKP4	2	159481554	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	7260984	159481554	83717819	85	24989										
BAZ2B	0	genome.wustl.edu	37	chr2	160239072	160239072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caacctaaatttcattacctCatcttcacagatatcagtct	2	12	6	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	160239072	160239072	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.4003	p.E1335K	1.000	superfamily_ARM-type_fold	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	90	0	0	46	17	26.98	-	-	-	T	160239072	C	T	160239072	3	4	268	1	0	0	0	0	1	0	0	0	1336	835	29	2	2555	2	BAZ2B	2	160239072	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	757518	160239072	82960301	86	24990										
TBR1	0	genome.wustl.edu	37	chr2	162276718	162276718	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttgccagattacacaactGaaaatagatcacaacccttt	4	11	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	162276718	162276718	G	A	SNP	TBR1	ENST00000389554	human	ensembl	69_37n	1	known	silent	c.1140	p.L380	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535	78	0	0	39	13	25	-	-	-	A	162276718	G	A	162276718	2	1	268	1	0	0	0	0	0	0	0	1	15742	1277	45	2		2	TBR1	2	162276718	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2037646	162276718	80922655	87	24991										
TTC21B	0	genome.wustl.edu	37	chr2	166731339	166731339	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ataagttggatgtgcttcaaGaacctgcaaaacaaataaag	8	6	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	166731339	166731339	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	missense	c.3877	p.L1293F	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	32	0	0	24	8	25	-	-	-	A	166731339	G	A	166731339	3	1	268	1	0	0	0	0	1	0	0	0	16785	942	33	2	77	2	TTC21B	2	166731339	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4454621	166731339	76468034	88	24992										
SP3	0	genome.wustl.edu	37	chr2	174774887	174774887	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagcactgtactgctagagtGaataccttttttattctggt	8	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	174774887	174774887	G	A	SNP	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	missense	c.2128	p.H710Y	1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	48	0	0	29	9	23.68	-	-	-	A	174774887	G	A	174774887	3	1	268	1	0	0	0	0	1	0	0	0	15054	1290	45	2	221	2	SP3	2	174774887	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8043548	174774887	68424486	89	24993										
CHN1	0	genome.wustl.edu	37	chr2	175779833	175779833	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgccgctggctctcccggatGaggtagctcccctcagccac	11	17	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	175779833	175779833	G	A	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	silent	c.213	p.L71	0.996	pfam_SH2,smart_SH2,pirsf_N-chimaerin,pfscan_SH2	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	67	0	0	43	12	21.82	-	-	-	A	175779833	G	A	175779833	2	1	268	1	0	0	0	0	0	0	0	1	3391	1277	45	2		2	CHN1	2	175779833	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1004946	175779833	67419540	90	24994										
HOXD10	0	genome.wustl.edu	37	chr2	176982240	176982240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aggccaaaggcggccttcccGaagagaggagctgcctggct	15	12	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	176982240	176982240	G	A	SNP	HOXD10	ENST00000249501	human	ensembl	69_37n	1	known	missense	c.679	p.E227K	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXD10	HGNC	ENSG00000128710	44	0	0	51	9	15	-	-	-	A	176982240	G	A	176982240	3	1	268	1	0	0	0	0	1	0	0	0	7370	1059	37	1	681	1	HOXD10	2	176982240	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1202407	176982240	66217133	91	24995										
TTN	0	genome.wustl.edu	37	chr2	179471903	179471903	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctattggttgtctccaagtaTgcatcttggcatcttttctt	7	9	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	179471903	179471903	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.45722	p.H15241L	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	70	0	0	47	6	11.32	-	-	-	A	179471903	T	A	179471903	3	1	268	1	0	0	0	0	1	0	0	0	16832	1464	51	5	54607	5	TTN	2	179471903	Missense_Mutation	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	2489663	179471903	63727470	92	24996										
TTN	0	genome.wustl.edu	37	chr2	179505325	179505325	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aacagtaggtacttcaacctCttcaacaggttttggaggtg	10	8	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	179505325	179505325	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.32962	p.E10988K	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	76	0	0	54	19	26.03	-	-	-	T	179505325	C	T	179505325	3	4	268	1	0	0	0	0	1	0	0	0	16832	922	32	2	67595	2	TTN	2	179505325	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	33422	179505325	63694048	93	24997										
TTN	0	genome.wustl.edu	37	chr2	179516000	179516000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgggacttctggctttttggGaacagctactttcttttctg	10	8	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	179516000	179516000	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.32293	p.P10765S	0.996	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	43	0	0	26	8	23.53	-	-	-	A	179516000	G	A	179516000	3	1	268	1	0	0	0	0	1	0	0	0	16832	1174	41	2	68296	2	TTN	2	179516000	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10675	179516000	63683373	94	24998										
CASP8	0	genome.wustl.edu	37	chr2	202149751	202149751	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccatctatgagctgacatctCagttcactggtttgaagtgc	9	10	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	202149751	202149751	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	nonsense	c.1192	p.Q398*	0.935	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	29	0	0	31	10	24.39	-	-	-	T	202149751	C	T	202149751	4	4	268	1	0	0	0	0	0	1	0	0	2702	827	29	2	1322	2	CASP8	2	202149751	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	22633751	202149751	41049622	95	24999										
NOP58	0	genome.wustl.edu	37	chr2	203162217	203162217	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caaattagaggccaggttgaGaactttggaagacagagggg	15	5	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	203162217	203162217	G	C	SNP	NOP58	ENST00000264279	human	ensembl	69_37n	1	known	missense	c.1187	p.R396T	1.000	pfam_SnoRNA-bd_dom	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044	24	0	0	20	9	31.03	-	-	-	C	203162217	G	C	203162217	3	2	268	1	0	0	0	0	1	0	0	0	10612	942	33	2	1229	2	NOP58	2	203162217	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1012466	203162217	40037156	96	25000										
MAP2	0	genome.wustl.edu	37	chr2	210543376	210543376	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgaacaagagaaagaagctCaacataaagaccagactgca	9	8	1	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	210543376	210543376	C	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.343	p.Q115E	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	58	0	0	49	10	16.95	-	-	-	G	210543376	C	G	210543376	3	3	268	1	0	0	0	0	1	0	0	0	9306	827	29	2	349	2	MAP2	2	210543376	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7381159	210543376	32655997	97	25001										
SPAG16	0	genome.wustl.edu	37	chr2	214149243	214149243	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggatgcccagctccgccgtGagggtcctggaagaggcgtt	17	11	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	214149243	214149243	G	C	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	silent	c.36	p.V12	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	89	0	0	59	18	23.38	-	-	-	C	214149243	G	C	214149243	2	2	268	1	0	0	0	0	0	0	0	1	15069	1277	45	2		2	SPAG16	2	214149243	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3605867	214149243	29050130	98	25002										
ABCA12	0	genome.wustl.edu	37	chr2	215914452	215914452	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttcctagaaaggtccaagaGaaggcatcatccacaatgta	8	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	215914452	215914452	G	C	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.591	p.F197L	0.998	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	34	0	0	20	12	37.5	-	-	-	C	215914452	G	C	215914452	3	2	268	1	0	0	0	0	1	0	0	0	30	933	33	2	7419	2	ABCA12	2	215914452	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1765209	215914452	27284921	99	25003										
FN1	0	genome.wustl.edu	37	chr2	216299422	216299422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggcttgttgtcacttaccttCaggtttactctcgcagttaa	8	10	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	216299422	216299422	C	T	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.274	p.E92K	1.000	smart_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	102	0	0	61	23	27.38	-	-	-	T	216299422	C	T	216299422	3	4	268	1	0	0	0	0	1	0	0	0	6008	835	29	2	7372	2	FN1	2	216299422	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	384970	216299422	26899951	100	25004										
RUFY4	0	genome.wustl.edu	37	chr2	218947953	218947953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgggacttggtccaggccatGaagaggcgggtgttggaact	17	8	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	218947953	218947953	G	A	SNP	RUFY4	ENST00000374155	human	ensembl	69_37n	1	known	missense	c.1536	p.M512I	1.000	superfamily_Znf_FYVE_PHD	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,pfscan_Run	-	no_errors	RUFY4	HGNC	ENSG00000188282	52	0	0	32	6	15.79	-	-	-	A	218947953	G	A	218947953	3	1	268	1	0	0	0	0	1	0	0	0	13827	1290	45	2	1510	2	RUFY4	2	218947953	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2648531	218947953	24251420	101	25005										
RHBDD1	0	genome.wustl.edu	37	chr2	227729702	227729702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aggaataaatctagaaagaaGactgggaagtagatggtttg	13	2	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	227729702	227729702	G	C	SNP	RHBDD1	ENST00000341329	human	ensembl	69_37n	1	known	missense	c.293	p.R98T	1.000	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD1	HGNC	ENSG00000144468	78	0	0	45	20	30.3	-	-	-	C	227729702	G	C	227729702	3	2	268	1	0	0	0	0	1	0	0	0	13400	942	33	2	295	2	RHBDD1	2	227729702	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8781749	227729702	15469671	102	25006										
DNER	0	genome.wustl.edu	37	chr2	230456533	230456535	+	In_Frame_Del	DEL	GCT	GCT	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caaatgcagaggtagccatcGctgctgctgctgctgctgct							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	230456533	230456535	GCT	-	DEL	DNER	ENST00000341772	human	ensembl	69_37n	-1	known	in_frame_del	c.348_346	p.S116in_frame_del	0.003:0.004:0.006	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957	50	0	0	27	3	10	-	-	-	-	230456535	GCT	-	230456533	7	5	268	1	0	1	0	1	0	0	0	0	4702	1078	38	0	1913	0	DNER	2	230456533	In_Frame_Del	DEL	GCT	TCGA-AC-A5XS-01A-11D-A29N-09	2726831	230456533	12742840	103	25007										
SP100	0	genome.wustl.edu	37	chr2	231307769	231307769	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaaaagacatttccattcctCgagggcctccgtgatcgtga	9	11	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	231307769	231307769	C	G	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	silent	c.225	p.L75	0.047	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	28	0	0	37	5	11.9	-	-	-	G	231307769	C	G	231307769	2	3	268	1	0	0	0	0	0	0	0	1	15049	871	31	3		3	SP100	2	231307769	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	851236	231307769	11891604	104	25008										
DIS3L2	0	genome.wustl.edu	37	chr2	232952308	232952308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agtccctgaaaagctataatGacagtcctgatgtcattgta	8	8	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	232952308	232952308	G	A	SNP	DIS3L2	ENST00000325385	human	ensembl	69_37n	1	known	missense	c.478	p.D160N	0.601	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L2	HGNC	ENSG00000144535	42	0	0	19	4	17.39	-	-	-	A	232952308	G	A	232952308	3	1	268	1	0	0	0	0	1	0	0	0	4573	1290	45	2	496	2	DIS3L2	2	232952308	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1644539	232952308	10247065	105	25009										
DIS3L2	0	genome.wustl.edu	37	chr2	232995392	232995392	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgcatttcacaagacacaaGagctttatcggagaaatccc	7	11	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	232995392	232995392	G	C	SNP	DIS3L2	ENST00000325385	human	ensembl	69_37n	1	known	missense	c.665	p.R222T	0.271	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L2	HGNC	ENSG00000144535	51	0	0	24	13	34.21	-	-	-	C	232995392	G	C	232995392	3	2	268	1	0	0	0	0	1	0	0	0	4573	942	33	2	687	2	DIS3L2	2	232995392	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	43084	232995392	10203981	106	25010										
NGEF	0	genome.wustl.edu	37	chr2	233785116	233785116	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagcaggcagatctggggcaGagtcttcctctctggtgggc	16	10	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	233785116	233785116	G	A	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	silent	c.706	p.L236	0.993	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	53	0	0	37	9	19.57	-	-	-	A	233785116	G	A	233785116	2	1	268	1	0	0	0	0	0	0	0	1	10466	933	33	2		2	NGEF	2	233785116	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	789724	233785116	9414257	107	25011										
UGT1A1	0	genome.wustl.edu	37	chr2	234669682	234669682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgtccaggacctattgagctCtgcatctgtctggctgttta	10	10	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	234669682	234669682	C	G	SNP	UGT1A1	ENST00000305208	human	ensembl	69_37n	1	known	missense	c.749	p.S250C	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635	97	0	0	56	16	22.22	-	-	-	G	234669682	C	G	234669682	3	3	268	1	0	0	0	0	1	0	0	0	17041	913	32	2	751	2	UGT1A1	2	234669682	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	884566	234669682	8529691	108	25012										
HDAC4	0	genome.wustl.edu	37	chr2	240056103	240056103	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctctgctggagggcgggaaGggtgagtctctcggcgtcct	17	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	240056103	240056103	G	C	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	missense	c.1132	p.L378V	0.959	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	75	0	0	51	21	29.17	-	-	-	C	240056103	G	C	240056103	3	2	268	1	0	0	0	0	1	0	0	0	7060	1000	35	4	2190	4	HDAC4	2	240056103	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5386421	240056103	3143270	109	25013										
SNED1	0	genome.wustl.edu	37	chr2	241976303	241976303	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctacacctgctcctgcctctCgggcttcacggggcggaggt	13	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	2	241976303	241976303	C	G	SNP	SNED1	ENST00000310397	human	ensembl	69_37n	1	known	missense	c.902	p.S301W	0.198	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3,superfamily_Complement_control_module,smart_Nidogen_extracell_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	30	0	0	8	4	33.33	-	-	-	G	241976303	C	G	241976303	3	3	268	1	0	0	0	0	1	0	0	0	14934	893	31	3	920	3	SNED1	2	241976303	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1920200	241976303	1223070	110	25014										
FANCD2	0	genome.wustl.edu	37	chr3	10138113	10138113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctcactctcaacaattgtaGagaggctttctggctgggca	11	10	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	10138113	10138113	G	C	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.4142	p.R1381T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	38	0	0	31	11	25.58	-	-	-	C	10138113	G	C	10138113	3	2	268	1	0	0	0	0	1	0	0	0	5711	942	33	2	4304	2	FANCD2	3	10138113	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		10138113	187884317	111	25015										
FGD5	0	genome.wustl.edu	37	chr3	14965558	14965558	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccgctgtcttcaccccgcttCtcgggcagtgccttttcatc	8	17	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	3	14965558	14965558	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.3981	p.F1327	0.987	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	46	0	0	16	3	15.79	-	-	-	T	14965558	C	T	14965558	2	4	268	1	0	0	0	0	0	0	0	1	5882	912	32	2		2	FGD5	3	14965558	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4827445	14965558	183056872	112	25016										
XYLB	0	genome.wustl.edu	37	chr3	38454474	38454474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccaaactcgagcagagaatCttgtctcagacccgggggcc	12	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	38454474	38454474	C	G	SNP	XYLB	ENST00000207870	human	ensembl	69_37n	1	known	missense	c.1581	p.I527M	0.994	NULL	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217	27	0	0	6	9	60	-	-	-	G	38454474	C	G	38454474	3	3	268	1	0	0	0	0	1	0	0	0	17559	903	32	2	1655	2	XYLB	3	38454474	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	23488916	38454474	159567956	113	25017										
LZTFL1	0	genome.wustl.edu	37	chr3	45869969	45869969	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgctcctgaaccctgagtaGatcgtgcttggctgtcgcca	11	13	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	45869969	45869969	G	A	SNP	LZTFL1	ENST00000440576	human	ensembl	69_37n	-1	novel	missense	c.545	p.S182F	0.988	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LZTFL1	HGNC	ENSG00000163818	42	0	0	38	10	20.83	-	-	-	A	45869969	G	A	45869969	3	1	268	1	0	0	0	0	1	0	0	0	9203	933	33	2	172	2	LZTFL1	3	45869969	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	7415495	45869969	152152461	114	25018										
CCRL2	0	genome.wustl.edu	37	chr3	46449777	46449777	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggtaaaatataaaggactCaaacgcgtggaaaatatcta	8	6	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	46449777	46449777	C	G	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	silent	c.243	p.L81	0.189	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	34	0	0	27	7	20.59	-	-	-	G	46449777	C	G	46449777	2	3	268	1	0	0	0	0	0	0	0	1	2979	813	29	2		2	CCRL2	3	46449777	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	579808	46449777	151572653	115	25019										
CCRL2	0	genome.wustl.edu	37	chr3	46450227	46450227	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctatttatttttacatttctCtatgtgcaaatgagaaaaac	4	6	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	46450227	46450227	C	G	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	silent	c.693	p.L231	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	58	0	0	34	10	22.73	-	-	-	G	46450227	C	G	46450227	2	3	268	1	0	0	0	0	0	0	0	1	2979	900	32	2		2	CCRL2	3	46450227	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	450	46450227	151572203	116	25020										
SETD2	0	genome.wustl.edu	37	chr3	47098919	47098919	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaacaacttccggcgttcctCtgtagaaagtttattgcggt	9	9	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	47098919	47098919	C	T	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.6355	p.E2119K	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	78	0	0	42	12	22.22	-	-	-	T	47098919	C	T	47098919	3	4	268	1	0	0	0	0	1	0	0	0	14219	922	32	2	1367	2	SETD2	3	47098919	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	648692	47098919	150923511	117	25021										
PLXNB1	0	genome.wustl.edu	37	chr3	48459322	48459322	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgggtgcagccagcttacctGctggagacctcgtactcctg	12	13	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	48459322	48459322	G	A	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	silent	c.3372	p.S1124	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	34	0	0	12	5	29.41	-	-	-	A	48459322	G	A	48459322	2	1	268	1	0	0	0	0	0	0	0	1	12197	1310	46	4		4	PLXNB1	3	48459322	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1360403	48459322	149563108	118	25022										
HYAL2	0	genome.wustl.edu	37	chr3	50357515	50357515	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacccacacaggtcgccagtCctcccagtcgatgaccgcca	8	19	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	50357515	50357515	C	A	SNP	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	missense	c.406	p.D136Y	1.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	41	0	0	16	5	23.81	-	-	-	A	50357515	C	A	50357515	3	1	268	1	0	0	0	0	1	0	0	0	7518	855	30	2	1027	2	HYAL2	3	50357515	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1898193	50357515	147664915	119	25023										
DNAH1	0	genome.wustl.edu	37	chr3	52402819	52402819	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacctccgacaccaacaagaAgtggtacatgttcgatgggc	10	12	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	52402819	52402819	A	G	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.5828	p.K1943R	1.000	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	49	0	0	21	9	30	-	-	-	G	52402819	A	G	52402819	3	3	268	1	0	0	0	0	1	0	0	0	4633	72	3	5	5970	5	DNAH1	3	52402819	Missense_Mutation	SNP	A	TCGA-AC-A5XS-01A-11D-A29N-09	2045304	52402819	145619611	120	25024										
DNASE1L3	0	genome.wustl.edu	37	chr3	58183646	58183646	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtcctcaagcggatgttcttCcaggccttcttggggacgta	12	11	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	58183646	58183646	C	G	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	missense	c.606	p.W202C	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	60	0	0	36	7	16.28	-	-	-	G	58183646	C	G	58183646	3	3	268	1	0	0	0	0	1	0	0	0	4698	856	30	2	323	2	DNASE1L3	3	58183646	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5780827	58183646	139838784	121	25025										
EPHA6	0	genome.wustl.edu	37	chr3	97365037	97365037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaaagcttgtgtgagcagtgCgagtccagctctggttatgg	15	7	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	97365037	97365037	C	T	SNP	EPHA6	ENST00000514100	human	ensembl	69_37n	1	novel	silent	c.1035	p.C345	0.000	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	28	0	0	16	10	38.46	-	-	-	T	97365037	C	T	97365037	2	4	268	1	0	0	0	0	0	0	0	1	5208	783	27	1		1	EPHA6	3	97365037	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	39181391	97365037	100657393	122	25026										
OR5H15	0	genome.wustl.edu	37	chr3	97888446	97888446	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagcaagtcatagtttcattCataaaaatgttaaaaagaaa	5	4	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	97888446	97888446	C	T	SNP	OR5H15	ENST00000356526	human	ensembl	69_37n	1	known	silent	c.903	p.F301	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412	47	0	0	28	13	31.71	-	-	-	T	97888446	C	T	97888446	2	4	268	1	0	0	0	0	0	0	0	1	11234	825	29	2		2	OR5H15	3	97888446	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	523409	97888446	100133984	123	25027										
CD47	0	genome.wustl.edu	37	chr3	107765161	107765161	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcatagttcaaatttcaatCttgcttttttcatgccccag	4	11	5	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	107765161	107765161	C	T	SNP	CD47	ENST00000471694	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CD47	HGNC	ENSG00000196776	65	0	0	29	10	25.64	-	-	-	T	107765161	C	T	107765161	1	4	268	0	1	0	0	0	0	0	0	0	3048	928	32	2		2	CD47	3	107765161	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	9876715	107765161	90257269	124	25028										
CD200R1	0	genome.wustl.edu	37	chr3	112642601	112642601	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttgtttgtagtatcatagaGaggattgttcttctctgtgt	10	5	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	112642601	112642601	G	C	SNP	CD200R1	ENST00000308611	human	ensembl	69_37n	-1	known	missense	c.970	p.L324V	0.967	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1	HGNC	ENSG00000163606	58	0	0	32	10	23.81	-	-	-	C	112642601	G	C	112642601	3	2	268	1	0	0	0	0	1	0	0	0	3010	942	33	2	80	2	CD200R1	3	112642601	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4877440	112642601	85379829	125	25029										
GTPBP8	0	genome.wustl.edu	37	chr3	112710180	112710180	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccccggaccttccgcggccaGaggtgagaggcgattctcac	13	15	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	112710180	112710180	G	A	SNP	GTPBP8	ENST00000383678	human	ensembl	69_37n	1	known	missense	c.334	p.E112K	1.000	pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,tigrfam_GTP-bd_ribosome_bio_YsxC	pfam_GTP_binding_domain,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,tigrfam_GTP-bd_ribosome_bio_YsxC	-	no_errors	GTPBP8	HGNC	ENSG00000163607	54	0	0	22	6	21.43	-	-	-	A	112710180	G	A	112710180	3	1	268	1	0	0	0	0	1	0	0	0	6935	943	33	2	336	2	GTPBP8	3	112710180	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	67579	112710180	85312250	126	25030										
SEMA5B	0	genome.wustl.edu	37	chr3	122641112	122641112	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccaatgtagagtacatggtaGagcgtgtctttagcctgcac	11	9	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	122641112	122641112	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	silent	c.1617	p.L539	0.999	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	55	0	0	28	15	34.88	-	-	-	A	122641112	G	A	122641112	2	1	268	1	0	0	0	0	0	0	0	1	14126	929	33	2		2	SEMA5B	3	122641112	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9930932	122641112	75381318	127	25031										
CCDC14	0	genome.wustl.edu	37	chr3	123666066	123666066	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgggcaggctacatggaactCcaggactggtattaaatgaa	12	7	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	123666066	123666066	C	G	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.929	p.G310A	0.039	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	69	0	0	57	19	25	-	-	-	G	123666066	C	G	123666066	3	3	268	1	0	0	0	0	1	0	0	0	2798	855	30	2	1956	2	CCDC14	3	123666066	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1024954	123666066	74356364	128	25032										
SLC12A8	0	genome.wustl.edu	37	chr3	124807179	124807179	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggaggggagcaagagagaccTcatccaccggaaaaagctga	14	9	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	124807179	124807179	T	A	SNP	SLC12A8	ENST00000423114	human	ensembl	69_37n	-1	known	missense	c.2044	p.R682W	0.998	NULL	pfam_AA-permease_dom,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SLC12A8	HGNC	ENSG00000221955	30	0	0	14	4	22.22	-	-	-	A	124807179	T	A	124807179	3	1	268	1	0	0	0	0	1	0	0	0	14478	1550	54	5	195	5	SLC12A8	3	124807179	Missense_Mutation	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	1141113	124807179	73215251	129	25033										
SNX4	0	genome.wustl.edu	37	chr3	125172706	125172706	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttctccttcatttatttgttCttctagcacctttattctgg	4	10	5	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	125172706	125172706	C	G	SNP	SNX4	ENST00000251775	human	ensembl	69_37n	-1	known	missense	c.1138	p.E380Q	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX4	HGNC	ENSG00000114520	83	0	0	49	17	25.76	-	-	-	G	125172706	C	G	125172706	3	3	268	1	0	0	0	0	1	0	0	0	14993	922	32	2	226	2	SNX4	3	125172706	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	365527	125172706	72849724	130	25034										
ACAD9	0	genome.wustl.edu	37	chr3	128628238	128628238	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actgcttcggccggaccgtgGagacactgctgctccgcttt	12	14	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	128628238	128628238	G	C	SNP	ACAD9	ENST00000308982	human	ensembl	69_37n	1	known	missense	c.1537	p.E513Q	0.997	superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646	50	0	0	41	13	24.07	-	-	-	C	128628238	G	C	128628238	3	2	268	1	0	0	0	0	1	0	0	0	111	1175	41	2	1595	2	ACAD9	3	128628238	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3455532	128628238	69394192	131	25035										
COL6A5	0	genome.wustl.edu	37	chr3	130095627	130095627	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcccaaaacatgacacagatCatcaaggatgtaaccaagta	6	10	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	130095627	130095627	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.615	p.I205	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	35	0	0	17	8	32	-	-	-	T	130095627	C	T	130095627	2	4	268	1	0	0	0	0	0	0	0	1	3732	816	29	2		2	COL6A5	3	130095627	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1467389	130095627	67926803	132	25036										
COL6A5	0	genome.wustl.edu	37	chr3	130116894	130116894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgctgcttattttttcagaCggtctccagagtgaaagcaa	10	8	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	130116894	130116894	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.3930	p.D1310	0.998	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	47	0	0	38	10	20.83	-	-	-	T	130116894	C	T	130116894	2	4	268	1	0	0	0	0	0	0	0	1	3732	535	19	1		1	COL6A5	3	130116894	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	21267	130116894	67905536	133	25037										
GRK7	0	genome.wustl.edu	37	chr3	141497504	141497504	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggaacccgcaacccttcctCagccaggccgtggccaccaa	10	18	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	141497504	141497504	C	T	SNP	GRK7	ENST00000264952	human	ensembl	69_37n	1	known	silent	c.378	p.L126	0.998	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK7	HGNC	ENSG00000114124	55	0	0	43	13	23.21	-	-	-	T	141497504	C	T	141497504	2	4	268	1	0	0	0	0	0	0	0	1	6845	813	29	2		2	GRK7	3	141497504	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	11380610	141497504	56524926	134	25038										
MED12L	0	genome.wustl.edu	37	chr3	151107800	151107800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcaacatataccgagtgcctCctaattactcgcctatctcc	5	15	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	151107800	151107800	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.5380	p.P1794S	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	45	0	0	31	13	29.55	-	-	-	T	151107800	C	T	151107800	3	4	268	1	0	0	0	0	1	0	0	0	9500	855	30	2	5522	2	MED12L	3	151107800	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	9610296	151107800	46914630	135	25039										
PIK3CA	0	genome.wustl.edu	37	chr3	178922364	178922364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaacactcaaagagtaccttGttccaatcccaggtaaggaa	8	10	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	178922364	178922364	G	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1133	p.C378F	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	31	10	24.39	-	-	-	T	178922364	G	T	178922364	3	4	268	1	0	0	0	0	1	0	0	0	11987	1377	48	4	1151	4	PIK3CA	3	178922364	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	27814564	178922364	19100066	136	25040										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcctctctctgaaatcactGagcaggagaaagattttcta							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	49	0	0	29	32	52.46	-	-	-	A	178936091	G	A	178936091	3	1	268	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	13727	178936091	19086339	137	25041	226	2								
PIK3CA	0	genome.wustl.edu	37	chr3	178936092	178936092	+	Missense_Mutation	SNP	A	A	G													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcctctctctgaaatcactgAgcaggagaaagattttctat							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	178936092	178936092	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1634	p.E545G	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	50	0	0	29	31	51.67	-	-	-	G	178936092	A	G	178936092	3	3	268	1	0	0	0	0	1	0	0	0	11987	304	11	5	1668	5	PIK3CA	3	178936092	Missense_Mutation	SNP	A	TCGA-AC-A5XS-01A-11D-A29N-09	1	178936092	19086338	138	25042	226	2								
DLG1	0	genome.wustl.edu	37	chr3	196842906	196842906	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcttctcctcctacaatgttGaaaccaaggcccgttgagcc	7	14	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	3	196842906	196842906	G	C	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.1434	p.F478L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	27	0	0	12	13	52	-	-	-	C	196842906	G	C	196842906	3	2	268	1	0	0	0	0	1	0	0	0	4590	1281	45	2	1436	2	DLG1	3	196842906	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	17906814	196842906	1179524	139	25043										
ZFYVE28	0	genome.wustl.edu	37	chr4	2275900	2275900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgtggctgctggggccgcctCtggccccatcttgtctgagg	15	14	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	2275900	2275900	C	T	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	missense	c.2095	p.E699K	0.790	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	69	0	0	25	14	35.9	-	-	-	T	2275900	C	T	2275900	3	4	268	1	0	0	0	0	1	0	0	0	17766	922	32	2	588	2	ZFYVE28	4	2275900	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		2275900	188878376	140	25044										
ADRA2C	0	genome.wustl.edu	37	chr4	3769694	3769694	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttaagcacatcctcttccGacggaggagaaggggcttca	11	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	3769694	3769694	G	C	SNP	ADRA2C	ENST00000330055	human	ensembl	69_37n	1	known	missense	c.1361	p.R454P	0.992	prints_Adren_rcpt_A2C	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2C,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2C	HGNC	ENSG00000184160	30	0	0	18	5	21.74	-	-	-	C	3769694	G	C	3769694	3	2	268	1	0	0	0	0	1	0	0	0	339	1058	37	3	1363	3	ADRA2C	4	3769694	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1493794	3769694	187384582	141	25045										
KCNIP4	0	genome.wustl.edu	37	chr4	20731719	20731719	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gacaagttaaatcacattttCaaagagctgcatggagcgca	9	8	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	20731719	20731719	C	T	SNP	KCNIP4	ENST00000382150	human	ensembl	69_37n	-1	known	missense	c.676	p.E226K	1.000	NULL	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	KCNIP4	HGNC	ENSG00000185774	27	0	0	23	5	17.86	-	-	-	T	20731719	C	T	20731719	3	4	268	1	0	0	0	0	1	0	0	0	8096	835	29	2	17	2	KCNIP4	4	20731719	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	16962025	20731719	170422557	142	25046										
SEL1L3	0	genome.wustl.edu	37	chr4	25785868	25785868	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	accttggaagctgctttcttCatcagctctaaggcaagccg	9	12	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	25785868	25785868	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.2262	p.M754I	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	71	0	0	53	7	11.67	-	-	-	T	25785868	C	T	25785868	3	4	268	1	0	0	0	0	1	0	0	0	14100	826	29	2	1180	2	SEL1L3	4	25785868	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5054149	25785868	165368408	143	25047										
N4BP2	0	genome.wustl.edu	37	chr4	40121932	40121934	+	In_Frame_Del	DEL	AAG	AAG	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgctgtagtgaaaataatcAagaagactgtgatcttgcaa							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	40121932	40121934	AAG	-	DEL	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	in_frame_del	c.2201_2203	p.E735in_frame_del	0.263:0.258:0.291	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	9	0	0	7	6	46.15	-	-	-	-	40121934	AAG	-	40121932	7	5	268	1	0	1	0	1	0	0	0	0	10182	130	5	0	2227	0	N4BP2	4	40121932	In_Frame_Del	DEL	AAG	TCGA-AC-A5XS-01A-11D-A29N-09	14336064	40121932	151032344	144	25048										
ADAMTS3	0	genome.wustl.edu	37	chr4	73161390	73161390	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagtggatgtgtacactcttGaatattgcacattcgtctaa	8	8	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	73161390	73161390	G	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	nonsense	c.2704	p.Q902*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	103	0	0	36	7	16.28	-	-	-	A	73161390	G	A	73161390	4	1	268	1	0	0	0	0	0	1	0	0	267	1299	45	2	929	2	ADAMTS3	4	73161390	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	33039458	73161390	117992886	145	25049										
SCD5	0	genome.wustl.edu	37	chr4	83552510	83552510	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgtctccagtcctggccttCcgggcctcgatcatcggctt	10	16	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	83552510	83552510	C	G	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	silent	c.963	p.R321	0.949	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	77	0	0	20	15	42.86	-	-	-	G	83552510	C	G	83552510	2	3	268	1	0	0	0	0	0	0	0	1	13974	842	30	2		2	SCD5	4	83552510	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10391120	83552510	107601766	146	25050										
SCLT1	0	genome.wustl.edu	37	chr4	129867259	129867259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caggaatctttggtgcatttCttccagttttctgtaatcac	7	9	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	129867259	129867259	C	G	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.1342	p.E448Q	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	49	0	0	29	13	30.95	-	-	-	G	129867259	C	G	129867259	3	3	268	1	0	0	0	0	1	0	0	0	13994	922	32	2	748	2	SCLT1	4	129867259	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	46314749	129867259	61287017	147	25051										
NR3C2	0	genome.wustl.edu	37	chr4	149002580	149002580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgatctccaccagcattgcgGggaactctaccttcagcgca	9	14	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	149002580	149002580	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.2882	p.P961L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	35	0	0	19	8	29.63	-	-	-	A	149002580	G	A	149002580	3	1	268	1	0	0	0	0	1	0	0	0	10704	1232	43	4	88	4	NR3C2	4	149002580	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	19135321	149002580	42151696	148	25052										
LRAT	0	genome.wustl.edu	37	chr4	155665727	155665727	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcctgttggccctgacagaCgacatggggcgcacgcagaa	13	12	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	155665727	155665727	C	T	SNP	LRAT	ENST00000336356	human	ensembl	69_37n	1	known	silent	c.249	p.D83	0.022	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207	25	0	0	11	4	26.67	-	-	-	T	155665727	C	T	155665727	2	4	268	1	0	0	0	0	0	0	0	1	8996	535	19	1		1	LRAT	4	155665727	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6663147	155665727	35488549	149	25053										
KLKB1	0	genome.wustl.edu	37	chr4	187130353	187130353	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagttccagcctgagcggttCttccccgagaatgcacaagg	12	12	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	4	187130353	187130353	C	T	SNP	KLKB1	ENST00000511608	human	ensembl	69_37n	1	putative	missense	c.128	p.S43F	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Cyt_P450,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Cyt_P450,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KLKB1	HGNC	ENSG00000164344	52	0	0	12	7	36.84	-	-	-	T	187130353	C	T	187130353	3	4	268	1	0	0	0	0	1	0	0	0	8465	912	32	2		2	KLKB1	4	187130353	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	31464626	187130353	4023923	150	25054										
CLPTM1L	0	genome.wustl.edu	37	chr5	1324880	1324880	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaatcacaagtgacttacctGagtatcgtactcctcggttt	8	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	1324880	1324880	G	C	SNP	CLPTM1L	ENST00000320895	human	ensembl	69_37n	-1	known	missense	c.1195	p.Q399E	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656	58	0	0	46	11	19.3	-	-	-	C	1324880	G	C	1324880	3	2	268	1	0	0	0	0	1	0	0	0	3585	1299	45	2	449	2	CLPTM1L	5	1324880	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		1324880	179590380	151	25055										
KIAA0947	0	genome.wustl.edu	37	chr5	5461881	5461881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgagagccaaatcagaacatGaacagaagactagccatcag	9	9	2	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	5461881	5461881	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.2434	p.E812K	0.016	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	33	0	0	29	6	17.14	-	-	-	A	5461881	G	A	5461881	3	1	268	1	0	0	0	0	1	0	0	0	8254	1291	45	2	2484	2	KIAA0947	5	5461881	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4137001	5461881	175453379	152	25056										
KIAA0947	0	genome.wustl.edu	37	chr5	5462876	5462876	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatgctgctgtagccgaggtGagaccttccttagaggtagg	15	8	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	5462876	5462876	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	silent	c.3429	p.V1143	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	45	0	0	32	13	28.89	-	-	-	A	5462876	G	A	5462876	2	1	268	1	0	0	0	0	0	0	0	1	8254	1277	45	2		2	KIAA0947	5	5462876	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	995	5462876	175452384	153	25057										
LIFR	0	genome.wustl.edu	37	chr5	38493888	38493888	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgttctattttgagatcatCttcaataagaaaggaggata	8	4	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	38493888	38493888	C	G	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	splice_site	c.1886-1	e13-1	1.000	-	-	-	no_errors	LIFR	HGNC	ENSG00000113594	40	0	0	25	11	30.56	-	-	-	G	38493888	C	G	38493888	5	3	268	1	0	0	0	0	0	0	1	0	8835	927	32	2	1436	2	LIFR	5	38493888	Splice_Site	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	33031012	38493888	142421372	154	25058										
PTGER4	0	genome.wustl.edu	37	chr5	40692106	40692106	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctccggacagcactgctcaGacagtcaaaggacatcttct	9	13	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	40692106	40692106	G	T	SNP	PTGER4	ENST00000302472	human	ensembl	69_37n	1	known	missense	c.1093	p.D365Y	0.913	prints_Prost_EP4_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522	29	0	0	17	4	19.05	-	-	-	T	40692106	G	T	40692106	3	4	268	1	0	0	0	0	1	0	0	0	12826	942	33	2	1099	2	PTGER4	5	40692106	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2198218	40692106	140223154	155	25059										
RGS7BP	0	genome.wustl.edu	37	chr5	63803631	63803631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctgcccctcactccgggcgGaaatgcacaagacaagaacc	10	15	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	63803631	63803631	G	A	SNP	RGS7BP	ENST00000334025	human	ensembl	69_37n	1	known	missense	c.259	p.E87K	1.000	NULL	NULL	-	no_errors	RGS7BP	HGNC	ENSG00000186479	30	0	0	19	5	20.83	-	-	-	A	63803631	G	A	63803631	3	1	268	1	0	0	0	0	1	0	0	0	13395	1175	41	2	265	2	RGS7BP	5	63803631	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	23111525	63803631	117111629	156	25060										
ADAMTS6	0	genome.wustl.edu	37	chr5	64509978	64509978	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agggaggaggattaggaataGagtaaattgtagggaaaagg	17	0	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	64509978	64509978	G	C	SNP	ADAMTS6	ENST00000417396	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	40	0	0	25	13	34.21	-	-	-	C	64509978	G	C	64509978	1	2	268	0	1	0	0	0	0	0	0	0	270	957	33	2		2	ADAMTS6	5	64509978	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	706347	64509978	116405282	157	25061										
THBS4	0	genome.wustl.edu	37	chr5	79374729	79374729	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagactgttctgaactccctCaactctctctgcagggcatg	8	13	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	79374729	79374729	C	G	SNP	THBS4	ENST00000504720	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	THBS4	HGNC	ENSG00000113296	60	0	0	20	13	39.39	-	-	-	G	79374729	C	G	79374729	1	3	268	0	1	0	0	0	0	0	0	0	15951	841	29	2		2	THBS4	5	79374729	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	14864751	79374729	101540531	158	25062										
GPR98	0	genome.wustl.edu	37	chr5	90073826	90073826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcaggaaaactgacaatgcGagacgaacagtctgcagtca	10	9	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	90073826	90073826	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.12632	p.R4211Q	0.998	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	40	0	0	25	10	28.57	-	-	-	A	90073826	G	A	90073826	3	1	268	1	0	0	0	0	1	0	0	0	6772	1058	37	1	12878	1	GPR98	5	90073826	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10699097	90073826	90841434	159	25063										
CAST	0	genome.wustl.edu	37	chr5	96082070	96082070	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagctaaagaagaaaaactaGagaagtgtggtgaggatgat	13	2	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	5	96082070	96082070	G	A	SNP	CAST	ENST00000395813	human	ensembl	69_37n	1	known	missense	c.1225	p.E409K	0.673	pfam_Prot_inh_calpain	pfam_Prot_inh_calpain	-	no_errors	CAST	HGNC	ENSG00000153113	84	0	0	47	17	26.56	-	-	-	A	96082070	G	A	96082070	3	1	268	1	0	0	0	0	1	0	0	0	2709	943	33	2	1415	2	CAST	5	96082070	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	6008244	96082070	84833190	160	25064										
CHD1	0	genome.wustl.edu	37	chr5	98229240	98229240	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttaaagttttatacagaaggGagtcatcattctttaatcgg	8	5	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	5	98229240	98229240	G	C	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.1871	p.S624C	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	49	0	0	29	12	29.27	-	-	-	C	98229240	G	C	98229240	3	2	268	1	0	0	0	0	1	0	0	0	3352	1174	41	2	3353	2	CHD1	5	98229240	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2147170	98229240	82686020	161	25065										
CAMK4	0	genome.wustl.edu	37	chr5	110809044	110809044	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaggttgtgcctatggacctGaggtggacatgtggtctgta	16	6	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	110809044	110809044	G	C	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	1	known	missense	c.661	p.E221Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	61	0	0	37	18	32.73	-	-	-	C	110809044	G	C	110809044	3	2	268	1	0	0	0	0	1	0	0	0	2630	1291	45	2	691	2	CAMK4	5	110809044	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	12579804	110809044	70106216	162	25066										
DMXL1	0	genome.wustl.edu	37	chr5	118529541	118529541	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agccttttctaccctcttctCaaagtagagccgaatatgat	6	11	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	118529541	118529541	C	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.7333	p.Q2445E	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	73	0	0	32	14	30.43	-	-	-	G	118529541	C	G	118529541	3	3	268	1	0	0	0	0	1	0	0	0	4630	827	29	2	7451	2	DMXL1	5	118529541	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7720497	118529541	62385719	163	25067										
CDC25C	0	genome.wustl.edu	37	chr5	137622292	137622292	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagaaagaagttaaacagttCttcctgactatataagttta	6	6	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	137622292	137622292	C	G	SNP	CDC25C	ENST00000323760	human	ensembl	69_37n	-1	known	missense	c.1054	p.E352Q	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402	35	0	0	23	5	17.86	-	-	-	G	137622292	C	G	137622292	3	3	268	1	0	0	0	0	1	0	0	0	3093	922	32	2	379	2	CDC25C	5	137622292	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	19092751	137622292	43292968	164	25068										
SRA1	0	genome.wustl.edu	37	chr5	139930428	139930428	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taccatccactgactgacctCagtcacatggtcaaccatga	6	14	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	139930428	139930428	C	T	SNP	SRA1	ENST00000336283	human	ensembl	69_37n	-1	known	missense	c.568	p.E190K	1.000	pfam_SRA1-protein/COPII_Sec31	pfam_SRA1-protein/COPII_Sec31	-	no_errors	SRA1	HGNC	ENSG00000213523	63	0	0	38	19	33.33	-	-	-	T	139930428	C	T	139930428	3	4	268	1	0	0	0	0	1	0	0	0	15223	835	29	2	146	2	SRA1	5	139930428	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2308136	139930428	40984832	165	25069										
APBB3	0	genome.wustl.edu	37	chr5	139940226	139940226	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcaccctcttctggtacctGaatggggtgtgcagtcatga	11	10	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	139940226	139940226	G	C	SNP	APBB3	ENST00000356738	human	ensembl	69_37n	-1	known	missense	c.1045	p.Q349E	0.887	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB3	HGNC	ENSG00000113108	37	0	0	19	7	26.92	-	-	-	C	139940226	G	C	139940226	3	2	268	1	0	0	0	0	1	0	0	0	763	1299	45	2	442	2	APBB3	5	139940226	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9798	139940226	40975034	166	25070										
APBB3	0	genome.wustl.edu	37	chr5	139940249	139940249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggggtgtgcagtcatgagaGagtcagacacactgagcatg	15	7	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	139940249	139940249	G	C	SNP	APBB3	ENST00000356738	human	ensembl	69_37n	-1	known	missense	c.1022	p.S341C	0.959	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB3	HGNC	ENSG00000113108	32	0	0	16	7	30.43	-	-	-	C	139940249	G	C	139940249	3	2	268	1	0	0	0	0	1	0	0	0	763	942	33	2	465	2	APBB3	5	139940249	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	23	139940249	40975011	167	25071										
PCDHAC2	0	genome.wustl.edu	37	chr5	140346930	140346930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcagccccagcgagcacttCgagctggaccttaagcccct	9	17	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	140346930	140346930	C	G	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	missense	c.579	p.F193L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	36	0	0	10	8	44.44	-	-	-	G	140346930	C	G	140346930	3	3	268	1	0	0	0	0	1	0	0	0	11606	883	31	3	581	3	PCDHAC2	5	140346930	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	406681	140346930	40568330	168	25072										
PCDH1	0	genome.wustl.edu	37	chr5	141244620	141244620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acaggtgacagctgcattctCtccctcatctcggtcagaca	8	14	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	141244620	141244620	C	G	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	missense	c.1276	p.E426Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	23	0	0	14	5	26.32	-	-	-	G	141244620	C	G	141244620	3	3	268	1	0	0	0	0	1	0	0	0	11579	922	32	2	2533	2	PCDH1	5	141244620	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	897690	141244620	39670640	169	25073										
RBM27	0	genome.wustl.edu	37	chr5	145650535	145650535	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aggcccagaaggagttattaGatactgaactggacctccac	10	10	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	5	145650535	145650535	G	C	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.2710	p.D904H	1.000	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	24	0	0	12	6	33.33	-	-	-	C	145650535	G	C	145650535	3	2	268	1	0	0	0	0	1	0	0	0	13210	942	33	2	2780	2	RBM27	5	145650535	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4405915	145650535	35264725	170	25074										
ATP10B	0	genome.wustl.edu	37	chr5	160061445	160061445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgtcagggtccccgtcttatCggagaagatgtactggatct	12	9	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	160061445	160061445	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1297	p.D433N	1.000	superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	23	0	0	20	8	28.57	-	-	-	T	160061445	C	T	160061445	3	4	268	1	0	0	0	0	1	0	0	0	1121	884	31	1	3148	1	ATP10B	5	160061445	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	14410910	160061445	20853815	171	25075										
C5orf25	0	genome.wustl.edu	37	chr5	175722213	175722213	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaatcttgctcagtggctctGagactgtggatgtcctaaag	11	8	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	175722213	175722213	G	A	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.1555	p.E519K	0.698	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	90	0	0	65	14	17.72	-	-	-	A	175722213	G	A	175722213	3	1	268	1	0	0	0	0	1	0	0	0	2309	1291	45	2	316	2	C5orf25	5	175722213	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	15660768	175722213	5193047	172	25076										
CANX	0	genome.wustl.edu	37	chr5	179147436	179147436	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggatggagaatgggaggctCctcagattgccaaccctaga	13	9	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	179147436	179147436	C	A	SNP	CANX	ENST00000415618	human	ensembl	69_37n	1	known	missense	c.1162	p.P388T	1.000	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022	106	0	0	70	25	26.32	-	-	-	A	179147436	C	A	179147436	3	1	268	1	0	0	0	0	1	0	0	0	2643	855	30	2	1091	2	CANX	5	179147436	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3425223	179147436	1767824	173	25077										
GNB2L1	0	genome.wustl.edu	37	chr5	180664279	180664279	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtagactgtaagaaaccgctCtcatttcaacagccagcttg	8	11	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	5	180664279	180664279	C	G	SNP	GNB2L1	ENST00000504128	human	ensembl	69_37n	-1	putative	missense	c.648	p.E216D	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNB2L1	HGNC	ENSG00000204628	58	0	0	38	8	17.39	-	-	-	G	180664279	C	G	180664279	3	3	268	1	0	0	0	0	1	0	0	0	6570	928	32	2		2	GNB2L1	5	180664279	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1516843	180664279	250981	174	25078										
IRF4	0	genome.wustl.edu	37	chr6	401423	401423	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tccggagctctgtgtttgcaGactgccggctgcacatctgc	12	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	401423	401423	G	A	SNP	IRF4	ENST00000380956	human	ensembl	69_37n	1	known	splice_site	c.746-1	e6-1	1.000	-	-	-	no_errors	IRF4	HGNC	ENSG00000137265	19	0	0	2	5	71.43	-	-	-	A	401423	G	A	401423	5	1	268	1	0	0	0	0	0	0	1	0	7886	956	33	2	767	2	IRF4	6	401423	Splice_Site	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		401423	170713644	175	25079										
NRSN1	0	genome.wustl.edu	37	chr6	24134688	24134688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagcctcaatttgggagtatGaggatgatttccagatccaa	10	8	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	24134688	24134688	G	A	SNP	NRSN1	ENST00000378491	human	ensembl	69_37n	1	known	missense	c.133	p.E45K	1.000	NULL	NULL	-	no_errors	NRSN1	HGNC	ENSG00000152954	71	0	0	65	14	17.72	-	-	-	A	24134688	G	A	24134688	3	1	268	1	0	0	0	0	1	0	0	0	10735	1291	45	2	135	2	NRSN1	6	24134688	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	23733265	24134688	146980379	176	25080										
HIST1H4D	0	genome.wustl.edu	37	chr6	26189128	26189128	+	Silent	SNP	C	C	T													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acattttccaggaaaactttCagcactccgcgagtttcctc							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	26189128	26189128	C	T	SNP	HIST1H4D	ENST00000340756	human	ensembl	69_37n	-1	known	silent	c.177	p.L59	0.935	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4D	HGNC	ENSG00000188987	72	0	0	46	23	33.33	-	-	-	T	26189128	C	T	26189128	2	4	268	1	0	0	0	0	0	0	0	1	7219	813	29	2		2	HIST1H4D	6	26189128	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2054440	26189128	144925939	177	25081	227	2								
HIST1H4D	0	genome.wustl.edu	37	chr6	26189135	26189135	+	Missense_Mutation	SNP	C	C	A													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccaggaaaactttcagcactCcgcgagtttcctcataaatg							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	26189135	26189135	C	A	SNP	HIST1H4D	ENST00000340756	human	ensembl	69_37n	-1	known	missense	c.170	p.G57V	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4D	HGNC	ENSG00000188987	69	0	0	50	12	19.35	-	-	-	A	26189135	C	A	26189135	3	1	268	1	0	0	0	0	1	0	0	0	7219	855	30	2	145	2	HIST1H4D	6	26189135	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7	26189135	144925932	178	25082	227	2								
HIST1H2BG	0	genome.wustl.edu	37	chr6	26216716	26216716	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccttggatgagatgccagtAtcggggtgaacctgttttag	14	7	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	26216716	26216716	A	T	SNP	HIST1H2BG	ENST00000244601	human	ensembl	69_37n	-1	known	missense	c.156	p.D52E	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990	91	0	0	116	35	23.18	-	-	-	T	26216716	A	T	26216716	3	4	268	1	0	0	0	0	1	0	0	0	7197	446	16	5	228	5	HIST1H2BG	6	26216716	Missense_Mutation	SNP	A	TCGA-AC-A5XS-01A-11D-A29N-09	27581	26216716	144898351	179	25083										
ZNF165	0	genome.wustl.edu	37	chr6	28056849	28056849	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aatgaatgtgggaaagctttCaggcacagctcaaaacttgc	10	8	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	28056849	28056849	C	T	SNP	ZNF165	ENST00000377325	human	ensembl	69_37n	1	known	silent	c.1059	p.F353	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279	52	0	0	45	10	18.18	-	-	-	T	28056849	C	T	28056849	2	4	268	1	0	0	0	0	0	0	0	1	17836	825	29	2		2	ZNF165	6	28056849	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1840133	28056849	143058218	180	25084										
ZSCAN16	0	genome.wustl.edu	37	chr6	28093431	28093431	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagctctgccgtcagtggctGaggccagaatgccacaccaa	12	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	28093431	28093431	G	C	SNP	ZSCAN16	ENST00000340487	human	ensembl	69_37n	1	known	silent	c.210	p.L70	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812	29	0	0	39	7	15.22	-	-	-	C	28093431	G	C	28093431	2	2	268	1	0	0	0	0	0	0	0	1	18321	1277	45	2		2	ZSCAN16	6	28093431	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	36582	28093431	143021636	181	25085										
MOG	0	genome.wustl.edu	37	chr6	29633972	29633972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggagtgctggttctcctcgcGgtgctgcctgtgctcctcct	13	14	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	29633972	29633972	G	A	SNP	MOG	ENST00000376898	human	ensembl	69_37n	1	known	silent	c.480	p.A160	0.000	pirsf_Myelin-oligodendrocyte_glycop	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	MOG	HGNC	ENSG00000204655	49	0	0	40	12	23.08	-	-	-	A	29633972	G	A	29633972	2	1	268	1	0	0	0	0	0	0	0	1	9765	1103	39	1		1	MOG	6	29633972	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1540541	29633972	141481095	182	25086										
ABCF1	0	genome.wustl.edu	37	chr6	30546270	30546270	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtaatgtttttgcagccctGattcaggatcagagtgagga	13	6	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	30546270	30546270	G	C	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	silent	c.405	p.L135	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	57	0	0	51	11	17.74	-	-	-	C	30546270	G	C	30546270	2	2	268	1	0	0	0	0	0	0	0	1	65	1277	45	2		2	ABCF1	6	30546270	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	912298	30546270	140568797	183	25087										
ABCF1	0	genome.wustl.edu	37	chr6	30546304	30546304	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgaggaagaggaggaggaaGaaaaacatcctcctaagcct	13	7	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	30546304	30546304	G	C	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.439	p.E147Q	0.990	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	37	0	0	35	7	16.67	-	-	-	C	30546304	G	C	30546304	3	2	268	1	0	0	0	0	1	0	0	0	65	943	33	2	461	2	ABCF1	6	30546304	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	34	30546304	140568763	184	25088										
CCHCR1	0	genome.wustl.edu	37	chr6	31110858	31110858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agtagggaaggaagaactgtCaacagtcgctgctgcttgta	13	7	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	31110858	31110858	C	G	SNP	CCHCR1	ENST00000396268	human	ensembl	69_37n	-1	known	missense	c.2373	p.L791F	0.996	pfam_HCR	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536	71	0	0	64	12	15.79	-	-	-	G	31110858	C	G	31110858	3	3	268	1	0	0	0	0	1	0	0	0	2904	825	29	2	250	2	CCHCR1	6	31110858	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	564554	31110858	140004209	185	25089										
C6orf47	0	genome.wustl.edu	37	chr6	31627618	31627618	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agtcacttcctgaattctccGaggagctgtccacccgtctg	9	14	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	31627618	31627618	G	C	SNP	C6orf47	ENST00000375911	human	ensembl	69_37n	-1	known	missense	c.107	p.S36W	0.867	NULL	NULL	-	no_errors	C6orf47	HGNC	ENSG00000204439	38	0	0	41	6	12.77	-	-	-	C	31627618	G	C	31627618	3	2	268	1	0	0	0	0	1	0	0	0	2385	1059	37	3	781	3	C6orf47	6	31627618	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	516760	31627618	139487449	186	25090										
HSPA1L	0	genome.wustl.edu	37	chr6	31779414	31779414	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcagggtagaaagctttattCtcccctttgtaggacacaag	9	9	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	31779414	31779414	C	G	SNP	HSPA1L	ENST00000375654	human	ensembl	69_37n	-1	known	missense	c.336	p.E112D	0.927	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390	67	0	0	46	11	19.3	-	-	-	G	31779414	C	G	31779414	3	3	268	1	0	0	0	0	1	0	0	0	7463	912	32	2	1593	2	HSPA1L	6	31779414	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	151796	31779414	139335653	187	25091										
SLC39A7	0	genome.wustl.edu	37	chr6	33169119	33169119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggactcgggggtcatgacGacctgcacgacgatctgcaa	13	12	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	33169119	33169119	G	A	SNP	SLC39A7	ENST00000374675	human	ensembl	69_37n	1	known	missense	c.97	p.D33N	0.982	NULL	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473	51	0	0	66	20	23.26	-	-	-	A	33169119	G	A	33169119	3	1	268	1	0	0	0	0	1	0	0	0	14712	1058	37	1	99	1	SLC39A7	6	33169119	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1389705	33169119	137945948	188	25092										
ITPR3	0	genome.wustl.edu	37	chr6	33589434	33589434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acatcgtctccctgtacgccGagggctccgtcaatggcttc	10	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	33589434	33589434	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.55	p.E19K	1.000	pfam_Ins145_P3_rcpt	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	62	0	0	60	17	22.08	-	-	-	A	33589434	G	A	33589434	3	1	268	1	0	0	0	0	1	0	0	0	7976	1059	37	1	57	1	ITPR3	6	33589434	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	420315	33589434	137525633	189	25093										
TULP1	0	genome.wustl.edu	37	chr6	35479428	35479428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggggccctctctcaccgtCctccgcgtctggggcacggg	14	17	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	35479428	35479428	C	T	SNP	TULP1	ENST00000229771	human	ensembl	69_37n	-1	known	missense	c.346	p.D116N	0.843	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041	63	0	0	55	10	15.38	-	-	-	T	35479428	C	T	35479428	3	4	268	1	0	0	0	0	1	0	0	0	16870	855	30	2	1330	2	TULP1	6	35479428	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1889994	35479428	135635639	190	25094										
STK38	0	genome.wustl.edu	37	chr6	36493391	36493391	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcatcttttaggccttcttCttccatcaccttttctaact	2	14	6	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	36493391	36493391	C	T	SNP	STK38	ENST00000229812	human	ensembl	69_37n	-1	known	missense	c.160	p.E54K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38	HGNC	ENSG00000112079	46	0	0	62	11	15.07	-	-	-	T	36493391	C	T	36493391	3	4	268	1	0	0	0	0	1	0	0	0	15394	922	32	2	1285	2	STK38	6	36493391	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1013963	36493391	134621676	191	25095										
PPP2R5D	0	genome.wustl.edu	37	chr6	42978724	42978724	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaagaggactgtggagactGaggctgttcaggtgggaggg	20	4	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	42978724	42978724	G	C	SNP	PPP2R5D	ENST00000485511	human	ensembl	69_37n	1	known	missense	c.1660	p.E554Q	1.000	pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5D	HGNC	ENSG00000112640	47	0	0	36	9	20	-	-	-	C	42978724	G	C	42978724	3	2	268	1	0	0	0	0	1	0	0	0	12472	1291	45	2	1718	2	PPP2R5D	6	42978724	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	6485333	42978724	128136343	192	25096										
PKHD1	0	genome.wustl.edu	37	chr6	51893112	51893112	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acatccaaatccgtatagttCatcagcctcgccactccaat	4	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	51893112	51893112	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.3402	p.M1134I	0.003	superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	48	0	0	27	15	35.71	-	-	-	T	51893112	C	T	51893112	3	4	268	1	0	0	0	0	1	0	0	0	12045	826	29	2	9013	2	PKHD1	6	51893112	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8914388	51893112	119221955	193	25097										
DST	0	genome.wustl.edu	37	chr6	56484598	56484598	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctgagtgtattatttgtttCatctagtttatcttttagca	6	5	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	56484598	56484598	C	T	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.4234	p.E1412K	0.997	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	66	0	0	26	13	33.33	-	-	-	T	56484598	C	T	56484598	3	4	268	1	0	0	0	0	1	0	0	0	4818	835	29	2	16169	2	DST	6	56484598	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4591486	56484598	114630469	194	25098										
RIMS1	0	genome.wustl.edu	37	chr6	72892561	72892561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cggttcccgcagaagccccgGagctcaaagcccaggagccc	12	17	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	72892561	72892561	G	C	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.1387	p.E463Q	0.962	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	20	0	0	15	5	25	-	-	-	C	72892561	G	C	72892561	3	2	268	1	0	0	0	0	1	0	0	0	13453	1175	41	2	1409	2	RIMS1	6	72892561	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	16407963	72892561	98222506	195	25099										
EEF1A1	0	genome.wustl.edu	37	chr6	74227879	74227879	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttttaccagaacggcgatCaatcttttccttcagctcag	6	12	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	74227879	74227879	C	G	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.1138	p.D380H	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	57	0	0	55	14	20.29	-	-	-	G	74227879	C	G	74227879	3	3	268	1	0	0	0	0	1	0	0	0	4958	826	29	2	258	2	EEF1A1	6	74227879	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1335318	74227879	96887188	196	25100										
LAMA4	0	genome.wustl.edu	37	chr6	112440398	112440398	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttccaggagccacacctccCaaataaatgggacccttgat	7	13	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	112440398	112440398	C	T	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	silent	c.4782	p.L1594	0.972	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	69	0	0	28	15	34.88	-	-	-	T	112440398	C	T	112440398	2	4	268	1	0	0	0	0	0	0	0	1	8662	593	21	4		4	LAMA4	6	112440398	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	38212519	112440398	58674669	197	25101										
ZUFSP	0	genome.wustl.edu	37	chr6	116977990	116977990	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gttgttgttgtttgtatcctCcagaattatctaaaccatat	6	7	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	116977990	116977990	C	G	SNP	ZUFSP	ENST00000368576	human	ensembl	69_37n	-1	known	missense	c.818	p.G273A	1.000	NULL	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975	133	0	0	43	35	44.87	-	-	-	G	116977990	C	G	116977990	3	3	268	1	0	0	0	0	1	0	0	0	18337	855	30	2	942	2	ZUFSP	6	116977990	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4537592	116977990	54137077	198	25102										
MED23	0	genome.wustl.edu	37	chr6	131919505	131919505	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agaatttcaatgcatttattGagttgctgaccccctgctga	8	9	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	131919505	131919505	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	silent	c.2547	p.L849	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	49	0	0	30	9	22.5	-	-	-	A	131919505	G	A	131919505	2	1	268	1	0	0	0	0	0	0	0	1	9512	1277	45	2		2	MED23	6	131919505	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	14941515	131919505	39195562	199	25103										
UTRN	0	genome.wustl.edu	37	chr6	145069573	145069573	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acgctgacatgaaggaggcaGagtccgtgcggaatggctgg	17	8	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	145069573	145069573	G	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	nonsense	c.8131	p.E2711*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	32	0	0	9	10	52.63	-	-	-	T	145069573	G	T	145069573	4	4	268	1	0	0	0	0	0	1	0	0	17200	943	33	2	8345	2	UTRN	6	145069573	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	13150068	145069573	26045494	200	25104										
AGPAT4	0	genome.wustl.edu	37	chr6	161574409	161574409	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagctcctcacggtgatggcGaagcccttggttcgtggcaa	13	11	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	161574409	161574409	G	A	SNP	AGPAT4	ENST00000320285	human	ensembl	69_37n	-1	known	silent	c.633	p.F211	1.000	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT4	HGNC	ENSG00000026652	54	0	0	15	13	46.43	-	-	-	A	161574409	G	A	161574409	2	1	268	1	0	0	0	0	0	0	0	1	389	1049	37	1		1	AGPAT4	6	161574409	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	16504836	161574409	9540658	201	25105										
TTLL2	0	genome.wustl.edu	37	chr6	167754552	167754552	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccatggcttttagaggtcaaCtacagcccagccttgacctt	8	13	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	6	167754552	167754552	C	T	SNP	TTLL2	ENST00000239587	human	ensembl	69_37n	1	known	silent	c.1164	p.N388	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC	ENSG00000120440	59	0	0	30	20	40	-	-	-	T	167754552	C	T	167754552	2	4	268	1	0	0	0	0	0	0	0	1	16824	564	20	4		4	TTLL2	6	167754552	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6180143	167754552	3360515	202	25106										
FAM20C	0	genome.wustl.edu	37	chr7	195707	195707	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaggccctgctgcacgacctCagctcccagaggatcaccag	11	16	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	195707	195707	C	T	SNP	FAM20C	ENST00000313766	human	ensembl	69_37n	1	known	silent	c.759	p.L253	0.218	NULL	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	37	0	0	22	8	26.67	-	-	-	T	195707	C	T	195707	2	4	268	1	0	0	0	0	0	0	0	1	5581	813	29	2		2	FAM20C	7	195707	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		195707	158942956	203	25107										
IL6	0	genome.wustl.edu	37	chr7	22771136	22771136	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acatgacaactcatctcattCtgcgcagctttaaggagttc	7	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	22771136	22771136	C	T	SNP	IL6	ENST00000258743	human	ensembl	69_37n	1	known	silent	c.583	p.L195	0.912	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_Interleukin_6,prints_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_Interleukin_6,prints_IL6_MGF_GCSF	-	no_errors	IL6	HGNC	ENSG00000136244	36	0	0	14	9	39.13	-	-	-	T	22771136	C	T	22771136	2	4	268	1	0	0	0	0	0	0	0	1	7755	912	32	2		2	IL6	7	22771136	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	22575429	22771136	136367527	204	25108										
HOXA11	0	genome.wustl.edu	37	chr7	27222523	27222523	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acttgacgatcagtgaggttGagcatgcgggacagttgcag	15	7	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	27222523	27222523	G	C	SNP	HOXA11	ENST00000517402	human	ensembl	69_37n	-1	putative	nonsense	c.743	p.S248*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HOXA11	HGNC	ENSG00000005073	76	0	0	42	15	26.32	-	-	-	C	27222523	G	C	27222523	4	2	268	1	0	0	0	0	0	1	0	0	7341	1277	45	2	111	2	HOXA11	7	27222523	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4451387	27222523	131916140	205	25109										
ELMO1	0	genome.wustl.edu	37	chr7	37298952	37298952	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atggagctgctgggcgttctGagccttatggggcaaaagca	15	8	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	37298952	37298952	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	nonsense	c.247	p.Q83*	1.000	superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	37	0	0	33	10	23.26	-	-	-	A	37298952	G	A	37298952	4	1	268	1	0	0	0	0	0	1	0	0	5102	1299	45	2	2004	2	ELMO1	7	37298952	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10076429	37298952	121839711	206	25110										
PSPH	0	genome.wustl.edu	37	chr7	56088902	56088902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctcagctctgagtgggagaCcatcgctggaagaattttcc	11	11	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	56088902	56088902	C	T	SNP	PSPH	ENST00000275605	human	ensembl	69_37n	-1	known	missense	c.4	p.V2I	1.000	tigrfam_SerB	pfam_Dehalogen-like_hydro,pfam_Pyrimidine_nucleotidase_eu,pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,tigrfam_SerB,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PSPH	HGNC	ENSG00000146733	26	0	0	21	7	25	-	-	-	T	56088902	C	T	56088902	3	4	268	1	0	0	0	0	1	0	0	0	12797	507	18	4	693	4	PSPH	7	56088902	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	18789950	56088902	103049761	207	25111										
MLXIPL	0	genome.wustl.edu	37	chr7	73008622	73008622	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acttggccggagagcgggcaGagagcagtactggtccagcc	16	11	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	73008622	73008622	G	C	SNP	MLXIPL	ENST00000313375	human	ensembl	69_37n	-1	known	missense	c.2422	p.L808V	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLXIPL	HGNC	ENSG00000009950	39	0	0	16	6	27.27	-	-	-	C	73008622	G	C	73008622	3	2	268	1	0	0	0	0	1	0	0	0	9708	933	33	2	144	2	MLXIPL	7	73008622	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	16919720	73008622	86130041	208	25112										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74524806	74524806	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgttgaagaagagtcctcctCagagaccaggatggtggtga	14	7	1	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	74524806	74524806	C	T	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	missense	c.50	p.S17L	0.260	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	39	0	0	49	11	18.33	-	-	-	T	74524806	C	T	74524806	3	4	268	1	0	0	0	0	1	0	0	0	6921	838	29	2	52	2	GTF2IRD2B	7	74524806	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1516184	74524806	84613857	209	25113										
AKAP9	0	genome.wustl.edu	37	chr7	91706193	91706193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caaacttagaagagcaattaGaacagtttagagaagaactg	9	5	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	91706193	91706193	G	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.6673	p.E2225Q	1.000	superfamily_Prefoldin	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	36	0	0	37	7	15.91	-	-	-	C	91706193	G	C	91706193	3	2	268	1	0	0	0	0	1	0	0	0	459	943	33	2	6751	2	AKAP9	7	91706193	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	17181387	91706193	67432470	210	25114										
CDK6	0	genome.wustl.edu	37	chr7	92244466	92244466	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgaggcctcaggctgtattCagctccgaggtgttctggct	13	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	92244466	92244466	C	T	SNP	CDK6	ENST00000265734	human	ensembl	69_37n	-1	known	silent	c.969	p.L323	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK6	HGNC	ENSG00000105810	67	0	0	32	10	23.81	-	-	-	T	92244466	C	T	92244466	2	4	268	1	0	0	0	0	0	0	0	1	3177	813	29	2		2	CDK6	7	92244466	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	538273	92244466	66894197	211	25115										
ASB4	0	genome.wustl.edu	37	chr7	95115434	95115434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggacactgtttttgaagtcGaagatgagaatatggttttg	12	3	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	95115434	95115434	G	C	SNP	ASB4	ENST00000325885	human	ensembl	69_37n	1	known	missense	c.151	p.E51Q	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981	37	0	0	27	8	22.86	-	-	-	C	95115434	G	C	95115434	3	2	268	1	0	0	0	0	1	0	0	0	1029	1059	37	3	153	3	ASB4	7	95115434	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2870968	95115434	64023229	212	25116										
PTCD1	0	genome.wustl.edu	37	chr7	99022941	99022941	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gttgggccttgccgggcactCtggcttccggaggctctgga	16	12	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	99022941	99022941	C	G	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	missense	c.1361	p.R454T	0.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	44	0	0	24	5	17.24	-	-	-	G	99022941	C	G	99022941	3	3	268	1	0	0	0	0	1	0	0	0	12807	913	32	2	900	2	PTCD1	7	99022941	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3907507	99022941	60115722	213	25117										
ZCWPW1	0	genome.wustl.edu	37	chr7	100004914	100004914	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagtcaggatcagattctatCatgcctggccacctggagaa	10	10	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	100004914	100004914	C	T	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.1002	p.M334I	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	63	0	0	40	8	16.67	-	-	-	T	100004914	C	T	100004914	3	4	268	1	0	0	0	0	1	0	0	0	17693	826	29	2	976	2	ZCWPW1	7	100004914	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	981973	100004914	59133749	214	25118										
COG5	0	genome.wustl.edu	37	chr7	106924090	106924090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccacccgggggaaaaaccaaGttgataggatcgaagagtcg	13	9	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	106924090	106924090	G	C	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.1494	p.N498K	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	52	0	0	24	6	20	-	-	-	C	106924090	G	C	106924090	3	2	268	1	0	0	0	0	1	0	0	0	3691	1020	36	4	1132	4	COG5	7	106924090	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	6919176	106924090	52214573	215	25119										
DOCK4	0	genome.wustl.edu	37	chr7	111580176	111580176	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtttcttacatgtatactttCagaatgaggtcatcctttgt	7	7	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	111580176	111580176	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	silent	c.966	p.L322	0.975	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	48	0	0	28	10	26.32	-	-	-	T	111580176	C	T	111580176	2	4	268	1	0	0	0	0	0	0	0	1	4724	813	29	2		2	DOCK4	7	111580176	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4656086	111580176	47558487	216	25120										
TSPAN12	0	genome.wustl.edu	37	chr7	120496758	120496758	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaaacttacttacccaaaaGagcagattgagggcgtagag	11	7	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	120496758	120496758	G	A	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	silent	c.60	p.L20	0.987	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	55	0	0	30	5	14.29	-	-	-	A	120496758	G	A	120496758	2	1	268	1	0	0	0	0	0	0	0	1	16732	929	33	2		2	TSPAN12	7	120496758	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8916582	120496758	38641905	217	25121										
WNT16	0	genome.wustl.edu	37	chr7	120969831	120969831	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccgccgccactaccgccccGatgggcgccagccccctctt	10	22	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	120969831	120969831	G	A	SNP	WNT16	ENST00000222462	human	ensembl	69_37n	1	known	silent	c.306	p.P102	0.000	pfam_Wnt,smart_Wnt,prints_Wnt16	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	62	0	0	41	6	12.77	-	-	-	A	120969831	G	A	120969831	2	1	268	1	0	0	0	0	0	0	0	1	17482	1045	37	1		1	WNT16	7	120969831	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	473073	120969831	38168832	218	25122										
CADPS2	0	genome.wustl.edu	37	chr7	121960230	121960230	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgtgtgatatcagccttcttCttcttcgtcactgtctttca	6	11	7	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	121960230	121960230	C	T	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.3880	p.E1294K	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	101	0	0	62	17	21.52	-	-	-	T	121960230	C	T	121960230	3	4	268	1	0	0	0	0	1	0	0	0	2596	922	32	2	14	2	CADPS2	7	121960230	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	990399	121960230	37178433	219	25123										
SMO	0	genome.wustl.edu	37	chr7	128852289	128852289	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atggatgcagactcggacttCtgagcctgcagagcaggacc	13	11	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	128852289	128852289	C	T	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	silent	c.2361	p.F787	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	13	0	0	7	5	41.67	-	-	-	T	128852289	C	T	128852289	2	4	268	1	0	0	0	0	0	0	0	1	14889	912	32	2		2	SMO	7	128852289	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6892059	128852289	30286374	220	25124										
CHCHD3	0	genome.wustl.edu	37	chr7	132481277	132481277	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagggtctggtgggtgttctCacggtaacactgaagaattt	14	6	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	132481277	132481277	C	G	SNP	CHCHD3	ENST00000262570	human	ensembl	69_37n	-1	known	missense	c.586	p.E196Q	0.937	NULL	pfam_DUF737	-	no_errors	CHCHD3	HGNC	ENSG00000106554	41	0	0	29	7	19.44	-	-	-	G	132481277	C	G	132481277	3	3	268	1	0	0	0	0	1	0	0	0	3346	835	29	2	105	2	CHCHD3	7	132481277	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3628988	132481277	26657386	221	25125										
MRPS33	0	genome.wustl.edu	37	chr7	140706093	140706093	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aatgtaaccggattagatttCaccaaggagatgactgtgtt	10	6	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	140706093	140706093	C	T	SNP	MRPS33	ENST00000472343	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPS33	HGNC	ENSG00000090263	25	0	0	12	5	29.41	-	-	-	T	140706093	C	T	140706093	1	4	268	0	1	0	0	0	0	0	0	0	9914	841	29	2		2	MRPS33	7	140706093	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8224816	140706093	18432570	222	25126										
ARHGEF35	0	genome.wustl.edu	37	chr7	143885236	143885236	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctccacatctgcagaaccttCcttgggaaaagagggcatcg	10	12	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	143885236	143885236	C	G	SNP	ARHGEF35	ENST00000378115	human	ensembl	69_37n	-1	known	missense	c.241	p.E81Q	0.004	NULL	NULL	-	no_errors	ARHGEF35	HGNC	ENSG00000213214	9	0	0	4	6	60	-	-	-	G	143885236	C	G	143885236	3	3	268	1	0	0	0	0	1	0	0	0	907	864	30	2	1217	2	ARHGEF35	7	143885236	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3179143	143885236	15253427	223	25127										
CNTNAP2	0	genome.wustl.edu	37	chr7	148117965	148117965	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagcaacagcatgtaaactaGaatgaaagaaggaaattatg	9	4	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	148117965	148117965	G	C	SNP	CNTNAP2	ENST00000463592	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	45	0	0	35	8	18.6	-	-	-	C	148117965	G	C	148117965	1	2	268	0	1	0	0	0	0	0	0	0	3677	957	33	2		2	CNTNAP2	7	148117965	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4232729	148117965	11020698	224	25128										
SSPO	0	genome.wustl.edu	37	chr7	149521701	149521701	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggccctggactggagcccctCacctctgcaccgcacccctc	9	21	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	149521701	149521701	C	T	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	17	0	0	14	4	22.22	-	-	-	T	149521701	C	T	149521701	1	4	268	0	1	0	0	0	0	0	0	0	15280	826	29	2		2	SSPO	7	149521701	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1403736	149521701	9616962	225	25129										
NOS3	0	genome.wustl.edu	37	chr7	150704043	150704043	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgtcctcttggcggcggaaGaggaaggagtccagtaacac	15	9	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	150704043	150704043	G	A	SNP	NOS3	ENST00000297494	human	ensembl	69_37n	1	known	silent	c.1887	p.K629	0.998	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	41	0	0	17	10	37.04	-	-	-	A	150704043	G	A	150704043	2	1	268	1	0	0	0	0	0	0	0	1	10616	933	33	2		2	NOS3	7	150704043	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1182342	150704043	8434620	226	25130										
ATG9B	0	genome.wustl.edu	37	chr7	150720301	150720301	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaaaataaattgtctgccggGaggaagggggggtgccggga	19	5	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	150720301	150720301	G	A	SNP	ATG9B	ENST00000473698	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	47	0	0	27	14	34.15	-	-	-	A	150720301	G	A	150720301	1	1	268	0	1	0	0	0	0	0	0	0	1107	1189	41	2		2	ATG9B	7	150720301	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	16258	150720301	8418362	227	25131										
AGAP3	0	genome.wustl.edu	37	chr7	150839697	150839697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggggccttgggtggctactCcaagccagggcctgatgcct	16	12	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	150839697	150839697	C	T	SNP	AGAP3	ENST00000397238	human	ensembl	69_37n	1	known	missense	c.2249	p.S750F	0.141	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612	46	0	0	17	6	26.09	-	-	-	T	150839697	C	T	150839697	3	4	268	1	0	0	0	0	1	0	0	0	369	855	30	2	2378	2	AGAP3	7	150839697	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	119396	150839697	8298966	228	25132										
DPP6	0	genome.wustl.edu	37	chr7	154659788	154659788	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagtggaatacagggacattGagattgatgattacagtaag	12	3	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	154659788	154659788	G	A	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.1798	p.E600K	0.742	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	26	0	0	10	4	28.57	-	-	-	A	154659788	G	A	154659788	3	1	268	1	0	0	0	0	1	0	0	0	4765	1291	45	2	1984	2	DPP6	7	154659788	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3820091	154659788	4478875	229	25133										
CNPY1	0	genome.wustl.edu	37	chr7	155301659	155301659	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	attcttggtatattttgtctCctttcctaggagcgaatctc	7	9	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	7	155301659	155301659	C	G	SNP	CNPY1	ENST00000321736	human	ensembl	69_37n	-1	putative	missense	c.74	p.G25A	0.790	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY1	HGNC	ENSG00000146910	36	0	0	20	5	20	-	-	-	G	155301659	C	G	155301659	3	3	268	1	0	0	0	0	1	0	0	0	3657	855	30	2	216	2	CNPY1	7	155301659	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	641871	155301659	3837004	230	25134										
FDFT1	0	genome.wustl.edu	37	chr8	11667181	11667181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcccttttttacagcaacgCagtgtgcatattttatctgg	7	9	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	11667181	11667181	C	T	SNP	FDFT1	ENST00000220584	human	ensembl	69_37n	1	known	missense	c.203	p.A68V	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	-	no_errors	FDFT1	HGNC	ENSG00000079459	40	0	0	26	8	23.53	-	-	-	T	11667181	C	T	11667181	3	4	268	1	0	0	0	0	1	0	0	0	5848	710	25	4	213	4	FDFT1	8	11667181	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		11667181	134696841	231	25135										
NEFL	0	genome.wustl.edu	37	chr8	24813739	24813739	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagctggcgaagcggtcattGaggtcctggagctgcgcctt	15	10	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	24813739	24813739	G	C	SNP	NEFL	ENST00000221169	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725	84	0	0	59	14	19.18	-	-	-	C	24813739	G	C	24813739	1	2	268	0	1	0	0	0	0	0	0	0	10387	1277	45	2		2	NEFL	8	24813739	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	13146558	24813739	121550283	232	25136										
PRKDC	0	genome.wustl.edu	37	chr8	48843275	48843275	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaaagccgaaaaatctttagGtttagctggatgcaagttag	11	5	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	48843275	48843275	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.1849	p.P617T	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	53	0	0	29	8	21.62	-	-	-	T	48843275	G	T	48843275	3	4	268	1	0	0	0	0	1	0	0	0	12602	1261	44	4	10816	4	PRKDC	8	48843275	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	24029536	48843275	97520747	233	25137										
PREX2	0	genome.wustl.edu	37	chr8	69104584	69104584	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgcagctaatgaggcctctCaacgctttggatgaacttta	9	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	69104584	69104584	C	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	silent	c.4428	p.L1476	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	50	0	0	27	6	18.18	-	-	-	A	69104584	C	A	69104584	2	1	268	1	0	0	0	0	0	0	0	1	12558	813	29	2		2	PREX2	8	69104584	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	20261309	69104584	77259438	234	25138										
MMP16	0	genome.wustl.edu	37	chr8	89339424	89339424	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgtcttccagtgctgaatgtGagtaagatcatagtgaactg	11	7	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	89339424	89339424	G	A	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	silent	c.12	p.L4	1.000	NULL	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	46	0	0	35	14	28.57	-	-	-	A	89339424	G	A	89339424	2	1	268	1	0	0	0	0	0	0	0	1	9726	1277	45	2		2	MMP16	8	89339424	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	20234840	89339424	57024598	235	25139										
LRP12	0	genome.wustl.edu	37	chr8	105509203	105509203	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctgtcttgatactgaccttCtttcaaacattctcagagaa	5	10	5	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	105509203	105509203	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.1520	p.R507K	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	59	0	0	37	9	19.57	-	-	-	T	105509203	C	T	105509203	3	4	268	1	0	0	0	0	1	0	0	0	9020	913	32	2	1014	2	LRP12	8	105509203	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	16169779	105509203	40854819	236	25140										
EPPK1	0	genome.wustl.edu	37	chr8	144944811	144944811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtccgcctgtctctgcgtctCcgcctccagcagctttgcca	9	18	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	144944811	144944811	C	G	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	missense	c.2611	p.E871Q	0.002	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	13	0	0	10	4	28.57	-	-	-	G	144944811	C	G	144944811	3	3	268	1	0	0	0	0	1	0	0	0	5227	864	30	2	4655	2	EPPK1	8	144944811	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	39435608	144944811	1419211	237	25141										
DGAT1	0	genome.wustl.edu	37	chr8	145541971	145541971	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atgagttgacgtcgcggtagGagaagagcttgaggaagagg	18	4	0	6			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	145541971	145541971	G	C	SNP	DGAT1	ENST00000332324	human	ensembl	69_37n	-1	known	missense	c.629	p.S210C	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000	35	0	0	19	7	26.92	-	-	-	C	145541971	G	C	145541971	3	2	268	1	0	0	0	0	1	0	0	0	4493	1174	41	2	881	2	DGAT1	8	145541971	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	597160	145541971	822051	238	25142										
DGAT1	0	genome.wustl.edu	37	chr8	145541991	145541991	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagaagagcttgaggaagagGatggtgtgcgccatcagcgc	17	7	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	145541991	145541991	G	A	SNP	DGAT1	ENST00000332324	human	ensembl	69_37n	-1	known	silent	c.609	p.I203	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000	38	0	0	19	9	32.14	-	-	-	A	145541991	G	A	145541991	2	1	268	1	0	0	0	0	0	0	0	1	4493	1164	41	2		2	DGAT1	8	145541991	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	20	145541991	822031	239	25143										
ZNF7	0	genome.wustl.edu	37	chr8	146063470	146063470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaaggctttagggaaggatCctgtcctgcctctccgggca	13	11	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	8	146063470	146063470	C	T	SNP	ZNF7	ENST00000528130	human	ensembl	69_37n	1	putative	missense	c.325	p.P109S	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789	67	0	0	41	19	31.67	-	-	-	T	146063470	C	T	146063470	3	4	268	1	0	0	0	0	1	0	0	0	18198	870	30	2		2	ZNF7	8	146063470	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	521479	146063470	300552	240	25144										
DOCK8	0	genome.wustl.edu	37	chr9	372225	372225	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaacgtcttcaaactggatCctactgtctcccagttgcct	7	13	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	372225	372225	C	G	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.2048	p.S683C	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	74	0	0	35	5	12.5	-	-	-	G	372225	C	G	372225	3	3	268	1	0	0	0	0	1	0	0	0	4728	855	30	2	2118	2	DOCK8	9	372225	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		372225	140841206	241	25145										
KIAA0020	0	genome.wustl.edu	37	chr9	2837402	2837402	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgtctttgaagaaccagaatCtagtgacaataataattata	6	5	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	2837402	2837402	C	G	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	splice_site	c.83-1	e2-1	1.000	-	-	-	no_errors	KIAA0020	HGNC	ENSG00000080608	51	0	0	33	10	22.73	-	-	-	G	2837402	C	G	2837402	5	3	268	1	0	0	0	0	0	0	1	0	8204	927	32	2	1928	2	KIAA0020	9	2837402	Splice_Site	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2465177	2837402	138376029	242	25146										
AQP3	0	genome.wustl.edu	37	chr9	33441702	33441703	+	RNA	INS	-	-	C													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgccctgaatatctgggaaINSccccccccacacacacacac							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	33441702	33441703	-	C	INS	AQP3	ENST00000493581	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.538:0.004	-	-	-	no_errors	AQP3	HGNC	ENSG00000165272	8	0	0	4	4	50	-	-	-	C	33441703	-	C	33441702	6	5	268	0	1	1	1	0	0	0	0	0	829	58	2	0		0	AQP3	9	33441702	RNA	INS	-	TCGA-AC-A5XS-01A-11D-A29N-09	30604300	33441702	107771729	243	25147										
NOL6	0	genome.wustl.edu	37	chr9	33462162	33462162	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tatagcccctttccactgctCagtgtcggtgatgtgactca	9	12	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	33462162	33462162	C	T	SNP	NOL6	ENST00000379471	human	ensembl	69_37n	-1	known	missense	c.3043	p.E1015K	0.026	NULL	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	52	0	0	38	10	20.83	-	-	-	T	33462162	C	T	33462162	3	4	268	1	0	0	0	0	1	0	0	0	10597	841	29	2		2	NOL6	9	33462162	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	20460	33462162	107751269	244	25148										
C9orf135	0	genome.wustl.edu	37	chr9	72520983	72520983	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acttggcatgatgagagtggGatttatgctaattcagatgt	12	4	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	72520983	72520983	G	A	SNP	C9orf135	ENST00000377197	human	ensembl	69_37n	1	known	silent	c.621	p.G207	0.996	NULL	NULL	-	no_errors	C9orf135	HGNC	ENSG00000204711	88	0	0	67	25	27.17	-	-	-	A	72520983	G	A	72520983	2	1	268	1	0	0	0	0	0	0	0	1	2483	1161	41	2		2	C9orf135	9	72520983	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	39058821	72520983	68692448	245	25149										
TRPM3	0	genome.wustl.edu	37	chr9	74061697	74061697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcggctctccgcgttgtcctCgcggtcggagcagccccgct	14	17	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	74061697	74061697	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.55	p.E19K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	43	0	0	22	7	24.14	-	-	-	T	74061697	C	T	74061697	3	4	268	1	0	0	0	0	1	0	0	0	16683	899	31	1		1	TRPM3	9	74061697	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1540714	74061697	67151734	246	25150										
ROR2	0	genome.wustl.edu	37	chr9	94484948	94484948	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ataggaccaacaatgtgtgcGgggcacagacggctgcctgt	14	10	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	94484948	94484948	G	A	SNP	ROR2	ENST00000550066	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ROR2	HGNC	ENSG00000169071	27	0	0	32	5	13.51	-	-	-	A	94484948	G	A	94484948	1	1	268	0	1	0	0	0	0	0	0	0	13613	1131	39	1		1	ROR2	9	94484948	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	20423251	94484948	46728483	247	25151										
ROR2	0	genome.wustl.edu	37	chr9	94486604	94486604	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcgttccagcactcgatcatGagggcatacacccaggcggg	12	13	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	94486604	94486604	G	A	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	silent	c.2172	p.L724	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	51	0	0	25	5	16.67	-	-	-	A	94486604	G	A	94486604	2	1	268	1	0	0	0	0	0	0	0	1	13613	1277	45	2		2	ROR2	9	94486604	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1656	94486604	46726827	248	25152										
IPPK	0	genome.wustl.edu	37	chr9	95397502	95397502	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tacagagggtagaggccttcGatgtccagcaggtccaacat	12	10	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	95397502	95397502	G	C	SNP	IPPK	ENST00000287996	human	ensembl	69_37n	-1	known	missense	c.1005	p.I335M	1.000	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080	58	0	0	33	4	10.81	-	-	-	C	95397502	G	C	95397502	3	2	268	1	0	0	0	0	1	0	0	0	7855	1048	37	3	486	3	IPPK	9	95397502	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	910898	95397502	45815929	249	25153										
FAM120AOS	0	genome.wustl.edu	37	chr9	96213286	96213286	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttagggctacctgtaccttCagacattatggtgtgtttgg	11	8	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	96213286	96213286	C	G	SNP	FAM120AOS	ENST00000428152	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	FAM120AOS	HGNC	ENSG00000188938	43	0	0	18	13	41.94	-	-	-	G	96213286	C	G	96213286	1	3	268	0	1	0	0	0	0	0	0	0	5456	841	29	2		2	FAM120AOS	9	96213286	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	815784	96213286	45000145	250	25154										
ACTL7A	0	genome.wustl.edu	37	chr9	111625373	111625373	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcctacctgctgggcctgctGaacagtgcggggaacgaatt	14	11	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	111625373	111625373	G	T	SNP	ACTL7A	ENST00000333999	human	ensembl	69_37n	1	known	silent	c.771	p.L257	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7A	HGNC	ENSG00000187003	76	0	0	32	13	28.89	-	-	-	T	111625373	G	T	111625373	2	4	268	1	0	0	0	0	0	0	0	1	200	1277	45	2		2	ACTL7A	9	111625373	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	15412087	111625373	29588058	251	25155										
AMBP	0	genome.wustl.edu	37	chr9	116823786	116823786	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagccgccgtactggaaagtCtcacaggccatggatgtacc	11	13	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	116823786	116823786	C	T	SNP	AMBP	ENST00000265132	human	ensembl	69_37n	-1	known	silent	c.771	p.E257	0.998	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin,pfscan_Prot_inh_Kunz-m	-	no_errors	AMBP	HGNC	ENSG00000106927	60	0	0	37	12	24.49	-	-	-	T	116823786	C	T	116823786	2	4	268	1	0	0	0	0	0	0	0	1	564	912	32	2		2	AMBP	9	116823786	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5198413	116823786	24389645	252	25156										
OR1N2	0	genome.wustl.edu	37	chr9	125315550	125315550	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gacttcctccttctaggactCtctgagtggccagaggagca	11	12	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	125315550	125315550	C	T	SNP	OR1N2	ENST00000373688	human	ensembl	69_37n	1	known	silent	c.102	p.L34	0.360	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1N2	HGNC	ENSG00000171501	53	0	0	39	12	23.53	-	-	-	T	125315550	C	T	125315550	2	4	268	1	0	0	0	0	0	0	0	1	11043	900	32	2		2	OR1N2	9	125315550	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8491764	125315550	15897881	253	25157										
NAIF1	0	genome.wustl.edu	37	chr9	130826063	130826063	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgcggcttgaccgacgtgtCtgcatgctgggccatcatgt	13	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	130826063	130826063	C	G	SNP	NAIF1	ENST00000373078	human	ensembl	69_37n	-1	known	missense	c.628	p.D210H	0.211	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	46	0	0	27	7	20.59	-	-	-	G	130826063	C	G	130826063	3	3	268	1	0	0	0	0	1	0	0	0	10218	913	32	2	359	2	NAIF1	9	130826063	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5510513	130826063	10387368	254	25158										
PTGES2	0	genome.wustl.edu	37	chr9	130887650	130887650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	catggaagtcgaggaaggctCggaccttgctgcagaaggga	16	8	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	130887650	130887650	C	T	SNP	PTGES2	ENST00000338961	human	ensembl	69_37n	-1	known	missense	c.350	p.R117Q	0.998	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	PTGES2	HGNC	ENSG00000148334	64	0	0	43	14	24.56	-	-	-	T	130887650	C	T	130887650	3	4	268	1	0	0	0	0	1	0	0	0	12828	884	31	1	807	1	PTGES2	9	130887650	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	61587	130887650	10325781	255	25159										
DNM1	0	genome.wustl.edu	37	chr9	130981478	130981478	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggccgtgtcccccgccaactCtgacctggccaattctgacg	10	17	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	130981478	130981478	C	T	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.536	p.S179F	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	30	0	0	17	8	32	-	-	-	T	130981478	C	T	130981478	3	4	268	1	0	0	0	0	1	0	0	0	4705	913	32	2	550	2	DNM1	9	130981478	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	93828	130981478	10231953	256	25160										
FCN2	0	genome.wustl.edu	37	chr9	137777128	137777128	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctagaccgagggcacttcctGagcggctggcacaccatcta	11	14	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	137777128	137777128	G	C	SNP	FCN2	ENST00000291744	human	ensembl	69_37n	1	known	silent	c.345	p.L115	0.862	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN2	HGNC	ENSG00000160339	97	0	0	62	18	22.5	-	-	-	C	137777128	G	C	137777128	2	2	268	1	0	0	0	0	0	0	0	1	5838	1277	45	2		2	FCN2	9	137777128	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	6795650	137777128	3436303	257	25161										
CAMSAP1	0	genome.wustl.edu	37	chr9	138702977	138702977	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgcgtgagatgagcgctgaGagaggggttttcttctgctg	16	7	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	138702977	138702977	G	A	SNP	CAMSAP1	ENST00000483991	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	57	0	0	37	10	21.28	-	-	-	A	138702977	G	A	138702977	1	1	268	0	1	0	0	0	0	0	0	0	2636	957	33	2		2	CAMSAP1	9	138702977	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	925849	138702977	2510454	258	25162										
GPSM1	0	genome.wustl.edu	37	chr9	139244164	139244164	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagaggaggccccgggagggCagccactccccgctggacag	17	14	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	139244164	139244164	C	T	SNP	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	silent	c.1404	p.G468	0.156	NULL	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	20	0	0	17	7	29.17	-	-	-	T	139244164	C	T	139244164	2	4	268	1	0	0	0	0	0	0	0	1	6785	697	25	4		4	GPSM1	9	139244164	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	541187	139244164	1969267	259	25163										
EXD3	0	genome.wustl.edu	37	chr9	140243649	140243649	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgtgcctgggcctccggctCccagccaggtcctccgacag	12	18	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	140243649	140243649	C	G	SNP	EXD3	ENST00000340951	human	ensembl	69_37n	-1	known	silent	c.1743	p.G581	0.019	superfamily_RNaseH-like_dom	pfam_DUF82,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609	78	0	0	37	9	19.57	-	-	-	G	140243649	C	G	140243649	2	3	268	1	0	0	0	0	0	0	0	1	5335	842	30	2		2	EXD3	9	140243649	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	999485	140243649	969782	260	25164										
EHMT1	0	genome.wustl.edu	37	chr9	140622927	140622927	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taccccccttcccatcccttCatcagtcgctacctcagaac	3	20	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	9	140622927	140622927	C	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.769	p.H257N	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	37	0	0	18	7	28	-	-	-	A	140622927	C	A	140622927	3	1	268	1	0	0	0	0	1	0	0	0	5018	826	29	2	783	2	EHMT1	9	140622927	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	379278	140622927	590504	261	25165										
SLC39A12	0	genome.wustl.edu	37	chr10	18250621	18250621	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttctctattacattattcatCaggaagagatctgttcttca	5	8	6	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	18250621	18250621	C	T	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	nonsense	c.373	p.Q125*	0.998	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	39	0	0	27	8	22.86	-	-	-	T	18250621	C	T	18250621	4	4	268	1	0	0	0	0	0	1	0	0	14704	827	29	2	379	2	SLC39A12	10	18250621	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		18250621	117284126	262	25166										
CUL2	0	genome.wustl.edu	37	chr10	35333605	35333605	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcaaaaatttcctgataaaaCtgaataaatcaattacatca	2	7	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	35333605	35333605	C	T	SNP	CUL2	ENST00000537177	human	ensembl	69_37n	-1	known	splice_site	c.661-1	e8-1	1.000	-	-	-	no_errors	CUL2	HGNC	ENSG00000108094	50	0	0	37	10	21.28	-	-	-	T	35333605	C	T	35333605	5	4	268	1	0	0	0	0	0	0	1	0	4086	579	20	4	1690	4	CUL2	10	35333605	Splice_Site	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	17082984	35333605	100201142	263	25167										
HNRNPF	0	genome.wustl.edu	37	chr10	43882982	43882982	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttgtgcatccaaatgggagTcctcgaagccgcacgaagcc	11	12	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	43882982	43882982	T	A	SNP	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	silent	c.351	p.G117	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	34	0	0	34	11	24.44	-	-	-	A	43882982	T	A	43882982	2	1	268	1	0	0	0	0	0	0	0	1	7316	1654	58	5		5	HNRNPF	10	43882982	Silent	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	8549377	43882982	91651765	264	25168										
ZNF239	0	genome.wustl.edu	37	chr10	44052785	44052785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctgatggataagcagactcGagctccttgtgaagcccttc	10	12	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	44052785	44052785	G	A	SNP	ZNF239	ENST00000306006	human	ensembl	69_37n	-1	known	missense	c.743	p.S248L	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793	89	0	0	41	18	30.51	-	-	-	A	44052785	G	A	44052785	3	1	268	1	0	0	0	0	1	0	0	0	17887	1059	37	1	637	1	ZNF239	10	44052785	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	169803	44052785	91481962	265	25169										
H2AFY2	0	genome.wustl.edu	37	chr10	71860020	71860020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggaaacggtaaaggagcttCgcaaatcccaaggccctttg	11	10	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	71860020	71860020	C	T	SNP	H2AFY2	ENST00000373255	human	ensembl	69_37n	1	known	missense	c.745	p.R249C	1.000	pfam_A1pp,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp	pfam_A1pp,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284	22	0	0	14	5	26.32	-	-	-	T	71860020	C	T	71860020	3	4	268	1	0	0	0	0	1	0	0	0	6981	884	31	1	767	1	H2AFY2	10	71860020	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	27807235	71860020	63674727	266	25170										
SGPL1	0	genome.wustl.edu	37	chr10	72576606	72576606	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cggagaggaggctggaagagGaagatgcctagcacagacct	16	8	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	72576606	72576606	G	A	SNP	SGPL1	ENST00000486993	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	SGPL1	HGNC	ENSG00000166224	50	0	0	32	7	17.95	-	-	-	A	72576606	G	A	72576606	1	1	268	0	1	0	0	0	0	0	0	0	14306	1189	41	2		2	SGPL1	10	72576606	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	716586	72576606	62958141	267	25171										
DNAJB12	0	genome.wustl.edu	37	chr10	74100860	74100860	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccgggccgcctggctcttgtCatcgccgaactggtcatact	11	15	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	74100860	74100860	C	T	SNP	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	missense	c.628	p.D210N	1.000	superfamily_DnaJ_N,prints_Hsp_DnaJ	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	62	0	0	28	16	36.36	-	-	-	T	74100860	C	T	74100860	3	4	268	1	0	0	0	0	1	0	0	0	4652	826	29	2	621	2	DNAJB12	10	74100860	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1524254	74100860	61433887	268	25172										
HECTD2	0	genome.wustl.edu	37	chr10	93220311	93220311	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctatccagcccaaaactgtGaaagactttcagtaagtttc	6	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	93220311	93220311	G	A	SNP	HECTD2	ENST00000446394	human	ensembl	69_37n	1	known	silent	c.396	p.V132	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	51	0	0	19	13	40.62	-	-	-	A	93220311	G	A	93220311	2	1	268	1	0	0	0	0	0	0	0	1	7091	1277	45	2		2	HECTD2	10	93220311	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	19119451	93220311	42314436	269	25173										
MORN4	0	genome.wustl.edu	37	chr10	99379352	99379352	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtccttctcaccctccttcCactcgccacgatattcctcc	4	20	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	99379352	99379352	C	T	SNP	MORN4	ENST00000307450	human	ensembl	69_37n	-1	known	nonsense	c.59	p.W20*	1.000	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	MORN4	HGNC	ENSG00000171160	45	0	0	31	4	11.43	-	-	-	T	99379352	C	T	99379352	4	4	268	1	0	0	0	0	0	1	0	0	9782	595	21	4	397	4	MORN4	10	99379352	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6159041	99379352	36155395	270	25174										
PDZD7	0	genome.wustl.edu	37	chr10	102778591	102778591	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccacgtaccccacaaggtcaGatagctctgggagcgcgtga	12	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	102778591	102778591	G	C	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	missense	c.1312	p.L438V	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	58	0	0	27	7	20.59	-	-	-	C	102778591	G	C	102778591	3	2	268	1	0	0	0	0	1	0	0	0	11777	933	33	2	253	2	PDZD7	10	102778591	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3399239	102778591	32756156	271	25175										
TAF5	0	genome.wustl.edu	37	chr10	105147961	105147961	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaacctggttctagctgcagGagcttatagtccacaataaa	8	9	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	105147961	105147961	G	C	SNP	TAF5	ENST00000369839	human	ensembl	69_37n	1	known	missense	c.2384	p.G795A	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	45	0	0	32	6	15.79	-	-	-	C	105147961	G	C	105147961	3	2	268	1	0	0	0	0	1	0	0	0	15620	1174	41	2	2426	2	TAF5	10	105147961	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2369370	105147961	30386786	272	25176										
CCDC147	0	genome.wustl.edu	37	chr10	106159178	106159178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aacactttattgaaaagcaaGaagctgaagagagaaaactc	8	6	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	10	106159178	106159178	G	A	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.1735	p.E579K	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	44	0	0	22	8	26.67	-	-	-	A	106159178	G	A	106159178	3	1	268	1	0	0	0	0	1	0	0	0	2806	943	33	2	1781	2	CCDC147	10	106159178	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1011217	106159178	29375569	273	25177										
PKP3	0	genome.wustl.edu	37	chr11	400018	400018	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cctgaaggaccgcctggccaGagacacgctggagcagctca	13	14	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	400018	400018	G	A	SNP	PKP3	ENST00000331563	human	ensembl	69_37n	1	known	missense	c.1325	p.R442K	0.801	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363	50	0	0	29	7	19.44	-	-	-	A	400018	G	A	400018	3	1	268	1	0	0	0	0	1	0	0	0	12060	942	33	2	1347	2	PKP3	11	400018	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		400018	134606498	274	25178										
PHRF1	0	genome.wustl.edu	37	chr11	607938	607938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agacgaagcagctgcggagcGaggtctacgacccatccgac	13	13	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	607938	607938	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	missense	c.2482	p.E828K	1.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	38	0	0	18	7	28	-	-	-	A	607938	G	A	607938	3	1	268	1	0	0	0	0	1	0	0	0	11935	1059	37	1	2529	1	PHRF1	11	607938	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	207920	607938	134398578	275	25179										
MUC5B	0	genome.wustl.edu	37	chr11	1268573	1268573	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacccacatcacagagccttCcacggtgacttcccacaccc	5	20	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	1268573	1268573	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.10472	p.S3491C	0.005	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	86	0	0	67	20	22.99	-	-	-	G	1268573	C	G	1268573	3	3	268	1	0	0	0	0	1	0	0	0	10051	855	30	2	10594	2	MUC5B	11	1268573	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	660635	1268573	133737943	276	25180										
OR51B4	0	genome.wustl.edu	37	chr11	5322639	5322639	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acaggcgagttttatgacatCttgatggaggcaaaatgtgt	12	5	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	5322639	5322639	C	T	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	missense	c.538	p.D180N	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	41	0	0	29	9	23.68	-	-	-	T	5322639	C	T	5322639	3	4	268	1	0	0	0	0	1	0	0	0	11163	913	32	2	397	2	OR51B4	11	5322639	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4054066	5322639	129683877	277	25181										
EIF3F	0	genome.wustl.edu	37	chr11	8013646	8013646	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttaggtggctgttgacatgGaatttgctaagaatatgtat	11	4	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	8013646	8013646	G	T	SNP	EIF3F	ENST00000537635	human	ensembl	69_37n	1	known	nonsense	c.496	p.E166*	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	EIF3F	HGNC	ENSG00000175390	56	0	0	42	8	16	-	-	-	T	8013646	G	T	8013646	4	4	268	1	0	0	0	0	0	1	0	0	5053	1175	41	2	461	2	EIF3F	11	8013646	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2691007	8013646	126992870	278	25182										
WEE1	0	genome.wustl.edu	37	chr11	9597779	9597779	+	Frame_Shift_Del	DEL	C	C	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaataacattttttttagttCctgtggtgaagacatggaag							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	9597779	9597779	C	-	DEL	WEE1	ENST00000450114	human	ensembl	69_37n	1	known	frame_shift_del	c.785	p.C263fs	1.000	pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE1	HGNC	ENSG00000166483	50	0	0	39	14	26.42	-	-	-	-	9597779	C	-	9597779	7	5	268	1	0	1	0	1	0	0	0	0	17441	855	30	0	795	0	WEE1	11	9597779	Frame_Shift_Del	DEL	C	TCGA-AC-A5XS-01A-11D-A29N-09	1584133	9597779	125408737	279	25183										
PRR5L	0	genome.wustl.edu	37	chr11	36472831	36472831	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggtgaagcaagtggtttctCctttcctcggcatcagcggg	13	10	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	36472831	36472831	C	G	SNP	PRR5L	ENST00000378867	human	ensembl	69_37n	1	known	missense	c.658	p.P220A	1.000	NULL	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362	105	0	0	67	20	22.99	-	-	-	G	36472831	C	G	36472831	3	3	268	1	0	0	0	0	1	0	0	0	12682	855	30	2	690	2	PRR5L	11	36472831	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	26875052	36472831	98533685	280	25184										
ACP2	0	genome.wustl.edu	37	chr11	47269175	47269175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	accttgttccccttgcctctGgagctcccaaccttacctct	5	18	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	47269175	47269175	G	A	SNP	ACP2	ENST00000529788	human	ensembl	69_37n	-1	putative	missense	c.314	p.P105L	0.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	ACP2	HGNC	ENSG00000134575	94	0	0	44	19	30.16	-	-	-	A	47269175	G	A	47269175	3	1	268	1	0	0	0	0	1	0	0	0	163	1363	47	4		4	ACP2	11	47269175	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10796344	47269175	87737341	281	25185										
NR1H3	0	genome.wustl.edu	37	chr11	47281033	47281033	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccagtctggatttgctgctaGagagttggccagctgagtgc	14	9	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	47281033	47281033	G	A	SNP	NR1H3	ENST00000419652	human	ensembl	69_37n	1	known	silent	c.165	p.*55	0.000	NULL	NULL	-	no_errors	NR1H3	HGNC	ENSG00000025434	54	0	0	29	8	21.62	-	-	-	A	47281033	G	A	47281033	2	1	268	1	0	0	0	0	0	0	0	1	10691	957	33	2		2	NR1H3	11	47281033	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	11858	47281033	87725483	282	25186										
NR1H3	0	genome.wustl.edu	37	chr11	47281069	47281069	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agtgcttaccctgctctggcTttgaagagttttatctgatc	9	9	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	47281069	47281069	T	A	SNP	NR1H3	ENST00000473222	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	NR1H3	HGNC	ENSG00000025434	49	0	0	26	9	25.71	-	-	-	A	47281069	T	A	47281069	1	1	268	0	1	0	0	0	0	0	0	0	10691	1624	56	5		5	NR1H3	11	47281069	RNA	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	36	47281069	87725447	283	25187										
MADD	0	genome.wustl.edu	37	chr11	47296127	47296127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcttcaggcacccgagcagtGatagcgtggcccagactcct	11	14	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	11	47296127	47296127	G	C	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.76	p.D26H	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	53	0	0	27	5	15.62	-	-	-	C	47296127	G	C	47296127	3	2	268	1	0	0	0	0	1	0	0	0	9219	1290	45	2	82	2	MADD	11	47296127	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	15058	47296127	87710389	284	25188										
SMTNL1	0	genome.wustl.edu	37	chr11	57314114	57314114	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacaacttcaccctggccttCtccacagcagagtaagccac	6	17	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	11	57314114	57314114	C	T	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	silent	c.1383	p.F461	0.984	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	42	0	0	17	7	29.17	-	-	-	T	57314114	C	T	57314114	2	4	268	1	0	0	0	0	0	0	0	1	14904	912	32	2		2	SMTNL1	11	57314114	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10017987	57314114	77692402	285	25189										
ZFP91	0	genome.wustl.edu	37	chr11	58384237	58384237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgctcgggccttcaagagttCccacaatctggcagtgcacc	10	14	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	58384237	58384237	C	T	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1151	p.S384F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	32	0	0	20	8	28.57	-	-	-	T	58384237	C	T	58384237	3	4	268	1	0	0	0	0	1	0	0	0	17751	855	30	2	1189	2	ZFP91	11	58384237	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1070123	58384237	76622279	286	25190										
C11orf84	0	genome.wustl.edu	37	chr11	63585739	63585739	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgccaacccagacgctgccaGaatgccagccgaaatcgtcg	10	16	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	63585739	63585739	G	A	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	1	known	missense	c.509	p.R170K	0.000	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	73	0	0	48	12	20	-	-	-	A	63585739	G	A	63585739	3	1	268	1	0	0	0	0	1	0	0	0	1678	942	33	2	519	2	C11orf84	11	63585739	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5201502	63585739	71420777	287	25191										
MARK2	0	genome.wustl.edu	37	chr11	63670150	63670150	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acgcagaaaataagcggcctGaggaggaccgggagtcaggg	17	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	63670150	63670150	G	C	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	missense	c.1312	p.E438Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	42	0	0	20	4	16.67	-	-	-	C	63670150	G	C	63670150	3	2	268	1	0	0	0	0	1	0	0	0	9384	1291	45	2	1362	2	MARK2	11	63670150	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	84411	63670150	71336366	288	25192										
MAP3K11	0	genome.wustl.edu	37	chr11	65380777	65380777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgtcacactgatgtcctcatCggggtcctggcgagctgcct	12	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	65380777	65380777	C	T	SNP	MAP3K11	ENST00000309100	human	ensembl	69_37n	-1	known	missense	c.451	p.D151N	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327	75	0	0	44	11	20	-	-	-	T	65380777	C	T	65380777	3	4	268	1	0	0	0	0	1	0	0	0	9316	884	31	1	2132	1	MAP3K11	11	65380777	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1710627	65380777	69625739	289	25193										
MAP3K11	0	genome.wustl.edu	37	chr11	65380870	65380870	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tccaatgccgatcacctcctCcagccgcagctcctggaagc	8	18	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	65380870	65380870	C	A	SNP	MAP3K11	ENST00000309100	human	ensembl	69_37n	-1	known	nonsense	c.358	p.E120*	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327	84	0	0	47	12	20.34	-	-	-	A	65380870	C	A	65380870	4	1	268	1	0	0	0	0	0	1	0	0	9316	864	30	2	2225	2	MAP3K11	11	65380870	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	93	65380870	69625646	290	25194										
PELI3	0	genome.wustl.edu	37	chr11	66238754	66238754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggggacaagggccgccggcGaagccgcctggcactgagcc	17	14	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	66238754	66238754	G	A	SNP	PELI3	ENST00000320740	human	ensembl	69_37n	1	known	missense	c.266	p.R89Q	0.988	pfam_Pellino	pfam_Pellino	-	no_errors	PELI3	HGNC	ENSG00000174516	44	0	0	21	13	38.24	-	-	-	A	66238754	G	A	66238754	3	1	268	1	0	0	0	0	1	0	0	0	11796	1058	37	1	276	1	PELI3	11	66238754	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	857884	66238754	68767762	291	25195										
ACTN3	0	genome.wustl.edu	37	chr11	66322631	66322631	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggcctggccctctgtgccctCatccaccgacaccgccctga	9	20	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	11	66322631	66322631	C	T	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	silent	c.717	p.L239	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	34	0	0	15	5	25	-	-	-	T	66322631	C	T	66322631	2	4	268	1	0	0	0	0	0	0	0	1	206	813	29	2		2	ACTN3	11	66322631	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	83877	66322631	68683885	292	25196										
TBC1D10C	0	genome.wustl.edu	37	chr11	67176587	67176587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cccccgcgcagctgcaggagGaggccttcatgtcacaggtg	14	14	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	67176587	67176587	G	A	SNP	TBC1D10C	ENST00000312390	human	ensembl	69_37n	1	known	missense	c.976	p.E326K	0.992	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	101	0	0	35	17	32.69	-	-	-	A	67176587	G	A	67176587	3	1	268	1	0	0	0	0	1	0	0	0	15692	1175	41	2	1006	2	TBC1D10C	11	67176587	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	853956	67176587	67829929	293	25197										
FOLH1B	0	genome.wustl.edu	37	chr11	89385751	89385751	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttcagtgctttctctcctCaaggaatgccagaggtaaaa	8	10	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	89385751	89385751	C	G	SNP	FOLH1B	ENST00000526379	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	71	0	0	36	9	20	-	-	-	G	89385751	C	G	89385751	1	3	268	0	1	0	0	0	0	0	0	0	6026	841	29	2		2	FOLH1B	11	89385751	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	22209164	89385751	45620765	294	25198										
CHORDC1	0	genome.wustl.edu	37	chr11	89935713	89935713	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tacataacttcgctttacatCaatcacctgtaacatatcaa	2	11	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	89935713	89935713	C	T	SNP	CHORDC1	ENST00000320585	human	ensembl	69_37n	-1	known	missense	c.859	p.D287N	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	CHORDC1	HGNC	ENSG00000110172	68	0	0	37	9	19.57	-	-	-	T	89935713	C	T	89935713	3	4	268	1	0	0	0	0	1	0	0	0	3394	826	29	2	143	2	CHORDC1	11	89935713	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	549962	89935713	45070803	295	25199										
MRE11A	0	genome.wustl.edu	37	chr11	94197299	94197299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgttttttccttttgttctCtatgcctgaaaaaatggata	6	7	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	94197299	94197299	C	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.1205	p.R402K	1.000	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	45	0	0	36	7	16.28	-	-	-	T	94197299	C	T	94197299	3	4	268	1	0	0	0	0	1	0	0	0	9831	913	32	2	961	2	MRE11A	11	94197299	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4261586	94197299	40809217	296	25200										
CEP57	0	genome.wustl.edu	37	chr11	95561159	95561159	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagttgtcagaagtcttacaGactttacaggatgaatttgg	11	5	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	95561159	95561159	G	A	SNP	CEP57	ENST00000535224	human	ensembl	69_37n	1	novel	missense	c.463	p.D155N	1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP57	HGNC	ENSG00000166037	69	0	0	37	8	17.78	-	-	-	A	95561159	G	A	95561159	3	1	268	1	0	0	0	0	1	0	0	0	3285	933	33	2	1129	2	CEP57	11	95561159	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1363860	95561159	39445357	297	25201										
TMEM136	0	genome.wustl.edu	37	chr11	120200956	120200956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcactatcacagtttcactgGagatgtagtggacttcctct	9	10	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	120200956	120200956	G	A	SNP	TMEM136	ENST00000314475	human	ensembl	69_37n	1	known	missense	c.536	p.G179E	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM136	HGNC	ENSG00000181264	95	0	0	40	18	31.03	-	-	-	A	120200956	G	A	120200956	3	1	268	1	0	0	0	0	1	0	0	0	16147	1189	41	2		2	TMEM136	11	120200956	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	24639797	120200956	14805560	298	25202										
ARHGEF12	0	genome.wustl.edu	37	chr11	120350701	120350701	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agcagttgctggtgcaacagCtaggtttgactgagaagagc	14	7	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	120350701	120350701	C	G	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.3742	p.L1248V	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	97	0	0	56	16	22.22	-	-	-	G	120350701	C	G	120350701	3	3	268	1	0	0	0	0	1	0	0	0	899	796	28	4	3949	4	ARHGEF12	11	120350701	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	149745	120350701	14655815	299	25203										
ARHGEF12	0	genome.wustl.edu	37	chr11	120352198	120352198	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atggagtattcctgttttgaGatccagagtccctcctcttg	9	10	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	120352198	120352198	G	C	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.4410	p.E1470D	0.987	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	75	0	0	52	6	10.34	-	-	-	C	120352198	G	C	120352198	3	2	268	1	0	0	0	0	1	0	0	0	899	933	33	2	4621	2	ARHGEF12	11	120352198	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1497	120352198	14654318	300	25204										
OR8D2	0	genome.wustl.edu	37	chr11	124189782	124189782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctgcaattacaaaaataagGaagaaataaagttgagtaat	7	3	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	124189782	124189782	G	C	SNP	OR8D2	ENST00000357438	human	ensembl	69_37n	-1	known	missense	c.312	p.F104L	0.301	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D2	HGNC	ENSG00000197263	34	0	0	27	8	22.86	-	-	-	C	124189782	G	C	124189782	3	2	268	1	0	0	0	0	1	0	0	0	11305	1165	41	2	626	2	OR8D2	11	124189782	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3837584	124189782	10816734	301	25205										
ROBO3	0	genome.wustl.edu	37	chr11	124748572	124748572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgcctggtcaccccatcccGaagggaaaccccctctccca	8	19	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	124748572	124748572	G	T	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.3413	p.R1138L	0.006	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	29	0	0	19	6	24	-	-	-	T	124748572	G	T	124748572	3	4	268	1	0	0	0	0	1	0	0	0	13601	1058	37	3	3503	3	ROBO3	11	124748572	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	558790	124748572	10257944	302	25206										
FOXRED1	0	genome.wustl.edu	37	chr11	126139304	126139304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggacagtgggtcggcttgggGaagggggttagcttacctac	18	7	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	11	126139304	126139304	G	A	SNP	FOXRED1	ENST00000532125	human	ensembl	69_37n	1	known	missense	c.37	p.E13K	0.000	NULL	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074	33	0	0	12	8	40	-	-	-	A	126139304	G	A	126139304	3	1	268	1	0	0	0	0	1	0	0	0	6081	1189	41	2		2	FOXRED1	11	126139304	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1390732	126139304	8867212	303	25207										
GALNT8	0	genome.wustl.edu	37	chr12	4835986	4835986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcgcaccatccccgacacgcGagactacaggtgggatgaac	11	14	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	4835986	4835986	G	A	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	missense	c.500	p.R167Q	0.053	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	45	0	0	33	17	34	-	-	-	A	4835986	G	A	4835986	3	1	268	1	0	0	0	0	1	0	0	0	6269	1058	37	1	506	1	GALNT8	12	4835986	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		4835986	129015909	304	25208										
ANO2	0	genome.wustl.edu	37	chr12	5853339	5853339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ataccccacagagccatgaaGatagagaagaagacggtggc	12	9	0	6			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	5853339	5853339	G	C	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.1326	p.I442M	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	33	0	0	11	7	38.89	-	-	-	C	5853339	G	C	5853339	3	2	268	1	0	0	0	0	1	0	0	0	696	932	33	2	1733	2	ANO2	12	5853339	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1017353	5853339	127998556	305	25209										
NCAPD2	0	genome.wustl.edu	37	chr12	6631181	6631181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	attggcatcatcagcaagatGatgtatgaaaacacaactac	7	8	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	6631181	6631181	G	C	SNP	NCAPD2	ENST00000315579	human	ensembl	69_37n	1	known	missense	c.1932	p.M644I	1.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	33	0	0	33	6	15.38	-	-	-	C	6631181	G	C	6631181	3	2	268	1	0	0	0	0	1	0	0	0	10277	1290	45	2	1986	2	NCAPD2	12	6631181	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	777842	6631181	127220714	306	25210										
CLEC4E	0	genome.wustl.edu	37	chr12	8689859	8689859	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atggacaacaattcttgactGaacctaggatgagagatgtt	10	6	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	8689859	8689859	G	T	SNP	CLEC4E	ENST00000299663	human	ensembl	69_37n	-1	known	nonsense	c.224	p.S75*	0.670	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4E	HGNC	ENSG00000166523	29	0	0	9	5	35.71	-	-	-	T	8689859	G	T	8689859	4	4	268	1	0	0	0	0	0	1	0	0	3545	1294	45	2	447	2	CLEC4E	12	8689859	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2058678	8689859	125162036	307	25211										
PRH1	0	genome.wustl.edu	37	chr12	11036778	11036778	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttaaatcctgagctgagctGaaggccagcagggccactga	12	10	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	11036778	11036778	G	A	SNP	PRH1	ENST00000428168	human	ensembl	69_37n	-1	known	silent	c.39	p.F13	0.721	NULL	NULL	-	no_errors	PRH1	HGNC	ENSG00000231887	79	0	0	35	10	22.22	-	-	-	A	11036778	G	A	11036778	2	1	268	1	0	0	0	0	0	0	0	1	12563	1281	45	2		2	PRH1	12	11036778	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2346919	11036778	122815117	308	25212										
PDZRN4	0	genome.wustl.edu	37	chr12	41967239	41967239	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagaagtgttcagagcccaaGatggaatggaaggtgaaaat	13	5	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	41967239	41967239	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	silent	c.2658	p.K886	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	39	0	0	12	6	33.33	-	-	-	A	41967239	G	A	41967239	2	1	268	1	0	0	0	0	0	0	0	1	11783	933	33	2		2	PDZRN4	12	41967239	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	30930461	41967239	91884656	309	25213										
PRKAG1	0	genome.wustl.edu	37	chr12	49397660	49397660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ataggtgccaatctgtagctCttccagagacttggacatga	10	9	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	49397660	49397660	C	T	SNP	PRKAG1	ENST00000548065	human	ensembl	69_37n	-1	known	missense	c.583	p.E195K	1.000	pfam_Cysta_beta_synth_core	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG1	HGNC	ENSG00000181929	41	0	0	14	12	46.15	-	-	-	T	49397660	C	T	49397660	3	4	268	1	0	0	0	0	1	0	0	0	12581	922	32	2	428	2	PRKAG1	12	49397660	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7430421	49397660	84454235	310	25214										
NCKAP5L	0	genome.wustl.edu	37	chr12	50189617	50189617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctctgagcccagggccccctCggggcctgtcttcagcttcc	11	18	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	50189617	50189617	C	T	SNP	NCKAP5L	ENST00000335999	human	ensembl	69_37n	-1	known	missense	c.2026	p.E676K	0.996	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566	54	0	0	30	8	21.05	-	-	-	T	50189617	C	T	50189617	3	4	268	1	0	0	0	0	1	0	0	0	10296	893	31	1	2002	1	NCKAP5L	12	50189617	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	791957	50189617	83662278	311	25215										
SCN8A	0	genome.wustl.edu	37	chr12	52163658	52163658	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccttgcgtgtctagaaactaGatgacaccagctcctctgaa	8	12	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	52163658	52163658	G	T	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.3379	p.D1127Y	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	43	0	0	31	12	27.91	-	-	-	T	52163658	G	T	52163658	3	4	268	1	0	0	0	0	1	0	0	0	14012	942	33	2	3445	2	SCN8A	12	52163658	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1974041	52163658	81688237	312	25216										
KRT86	0	genome.wustl.edu	37	chr12	52698793	52698793	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atccaggagatcgacttcctGaggcggctgtatgaggaggt	15	8	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	52698793	52698793	G	C	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	silent	c.717	p.L239	0.928	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	71	0	0	51	14	21.54	-	-	-	C	52698793	G	C	52698793	2	2	268	1	0	0	0	0	0	0	0	1	8553	1277	45	2		2	KRT86	12	52698793	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	535135	52698793	81153102	313	25217										
KRT86	0	genome.wustl.edu	37	chr12	52699843	52699843	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgttctctctgttctcttcaGaattccaagctggaggctgc	9	11	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	52699843	52699843	G	C	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	splice_site	c.1027-1	e7-1	1.000	-	-	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	49	0	0	34	10	22.73	-	-	-	C	52699843	G	C	52699843	5	2	268	1	0	0	0	0	0	0	1	0	8553	956	33	2	1052	2	KRT86	12	52699843	Splice_Site	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1050	52699843	81152052	314	25218										
KRT18	0	genome.wustl.edu	37	chr12	53345518	53345518	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgtccccatcctgcagattGaggagagcaccacagtggtc	11	13	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	53345518	53345518	G	C	SNP	KRT18	ENST00000388835	human	ensembl	69_37n	1	known	missense	c.826	p.E276Q	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	47	0	0	26	12	31.58	-	-	-	C	53345518	G	C	53345518	3	2	268	1	0	0	0	0	1	0	0	0	8508	1291	45	2	844	2	KRT18	12	53345518	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	645675	53345518	80506377	315	25219										
CBX5	0	genome.wustl.edu	37	chr12	54645966	54645966	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcataaattcagaaattagCtcagggcaatccaagttttt	6	7	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	54645966	54645966	C	G	SNP	CBX5	ENST00000209875	human	ensembl	69_37n	-1	known	missense	c.183	p.E61D	0.997	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916	43	0	0	35	6	14.63	-	-	-	G	54645966	C	G	54645966	3	3	268	1	0	0	0	0	1	0	0	0	2746	796	28	4	404	4	CBX5	12	54645966	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1300448	54645966	79205929	316	25220										
PDE1B	0	genome.wustl.edu	37	chr12	54964046	54964046	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acctggatctctggtgctttGatgtcttttccttgaaccag	9	10	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	54964046	54964046	G	C	SNP	PDE1B	ENST00000243052	human	ensembl	69_37n	1	known	missense	c.499	p.D167H	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	28	0	0	17	5	22.73	-	-	-	C	54964046	G	C	54964046	3	2	268	1	0	0	0	0	1	0	0	0	11707	1290	45	2	574	2	PDE1B	12	54964046	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	318080	54964046	78887849	317	25221										
CS	0	genome.wustl.edu	37	chr12	56666906	56666906	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacaaacttcatcagaccctCtgtgctcatggacttgggcc	8	14	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	56666906	56666906	C	G	SNP	CS	ENST00000351328	human	ensembl	69_37n	-1	known	missense	c.1363	p.E455Q	0.998	superfamily_Citrate_synthase-like_core,tigrfam_Citrate_synthase_euk	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,prints_Citrate_synthase-like,tigrfam_Citrate_synthase_euk	-	no_errors	CS	HGNC	ENSG00000062485	81	0	0	41	15	26.79	-	-	-	G	56666906	C	G	56666906	3	3	268	1	0	0	0	0	1	0	0	0	3954	922	32	2	41	2	CS	12	56666906	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1702860	56666906	77184989	318	25222										
SRGAP1	0	genome.wustl.edu	37	chr12	64485059	64485059	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atattcccttcccttaggccTccaaatgttccccctaagcc	4	17	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	64485059	64485059	T	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	silent	c.1440	p.P480	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	59	0	0	47	12	20.34	-	-	-	A	64485059	T	A	64485059	2	1	268	1	0	0	0	0	0	0	0	1	15236	1538	54	5		5	SRGAP1	12	64485059	Silent	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	7818153	64485059	69366836	319	25223										
IRAK3	0	genome.wustl.edu	37	chr12	66641490	66641490	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	attaggttttaaatactcttGaaagtactcaagccagcttg	7	7	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	66641490	66641490	G	A	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	1	known	missense	c.1330	p.E444K	0.898	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	74	0	0	41	19	31.67	-	-	-	A	66641490	G	A	66641490	3	1	268	1	0	0	0	0	1	0	0	0	7878	1291	45	2	1376	2	IRAK3	12	66641490	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2156431	66641490	67210405	320	25224										
CAPS2	0	genome.wustl.edu	37	chr12	75784631	75784633	+	In_Frame_Del	DEL	TTC	TTC	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tactcacgtaacacaagtctTtctttagtttgtcagacatc							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	75784631	75784633	TTC	-	DEL	CAPS2	ENST00000336815	human	ensembl	69_37n	-1	known	in_frame_del	c.20_18	p.K7in_frame_del	0.001:0.000:0.000	NULL	NULL	-	no_errors	CAPS2	HGNC	ENSG00000180881	34	0	0	26	7	21.21	-	-	-	-	75784633	TTC	-	75784631	7	5	268	1	0	1	0	1	0	0	0	0	2663	1856	64	0		0	CAPS2	12	75784631	In_Frame_Del	DEL	TTC	TCGA-AC-A5XS-01A-11D-A29N-09	9143141	75784631	58067264	321	25225										
E2F7	0	genome.wustl.edu	37	chr12	77439881	77439881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgggaatctggatcaccatCttttttacgttctccaaatt	6	10	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	77439881	77439881	C	T	SNP	E2F7	ENST00000322886	human	ensembl	69_37n	-1	known	missense	c.766	p.D256N	0.993	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	73	0	0	35	9	20.45	-	-	-	T	77439881	C	T	77439881	3	4	268	1	0	0	0	0	1	0	0	0	4907	913	32	2	2005	2	E2F7	12	77439881	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1655250	77439881	56412014	322	25226										
SLC6A15	0	genome.wustl.edu	37	chr12	85277802	85277802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtggtggcagaactttgttCacattctggttctacaactg	11	8	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	85277802	85277802	C	T	SNP	SLC6A15	ENST00000266682	human	ensembl	69_37n	-1	known	missense	c.592	p.E198K	1.000	pfam_Na/ntran_symport,prints_Na/ntran_symport_orphan,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan,pfscan_Na/ntran_symport	-	no_errors	SLC6A15	HGNC	ENSG00000072041	39	0	0	27	9	25	-	-	-	T	85277802	C	T	85277802	3	4	268	1	0	0	0	0	1	0	0	0	14767	835	29	2	1746	2	SLC6A15	12	85277802	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7837921	85277802	48574093	323	25227										
EPYC	0	genome.wustl.edu	37	chr12	91371955	91371955	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggagtagattcctcctcctCttcctcttcctgggccttct	8	15	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	12	91371955	91371955	C	G	SNP	EPYC	ENST00000261172	human	ensembl	69_37n	-1	known	missense	c.250	p.E84Q	0.953	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	51	0	0	27	8	22.86	-	-	-	G	91371955	C	G	91371955	3	3	268	1	0	0	0	0	1	0	0	0	5238	922	32	2	738	2	EPYC	12	91371955	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6094153	91371955	42479940	324	25228										
KERA	0	genome.wustl.edu	37	chr12	91449420	91449420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaaaacaactgcattgtattGgctggtaatcttggaggcat	10	6	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	91449420	91449420	G	A	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	silent	c.639	p.A213	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	64	0	0	41	16	28.07	-	-	-	A	91449420	G	A	91449420	2	1	268	1	0	0	0	0	0	0	0	1	8196	1335	47	4		4	KERA	12	91449420	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	77465	91449420	42402475	325	25229										
ANKS1B	0	genome.wustl.edu	37	chr12	99288516	99288516	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgctcccctagccgttgcctCtgtgcatctttctgggcgcc	10	17	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	99288516	99288516	C	G	SNP	ANKS1B	ENST00000549797	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ANKS1B	HGNC	ENSG00000185046	12	0	0	1	5	83.33	-	-	-	G	99288516	C	G	99288516	1	3	268	0	1	0	0	0	0	0	0	0	688	928	32	2		2	ANKS1B	12	99288516	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7839096	99288516	34563379	326	25230										
STAB2	0	genome.wustl.edu	37	chr12	104056750	104056750	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgattctgccccatcgatgtGatgaaacaaagagagagatg	11	8	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	104056750	104056750	G	A	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.1996	p.D666N	1.000	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	64	0	0	33	17	34	-	-	-	A	104056750	G	A	104056750	3	1	268	1	0	0	0	0	1	0	0	0	15329	1290	45	2	2066	2	STAB2	12	104056750	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4768234	104056750	29795145	327	25231										
CCDC63	0	genome.wustl.edu	37	chr12	111322027	111322027	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcaacaacgacatggagatGatgcacaagaggacccaacg	10	11	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	111322027	111322027	G	T	SNP	CCDC63	ENST00000308208	human	ensembl	69_37n	1	known	missense	c.1047	p.M349I	0.245	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	52	0	0	28	15	34.88	-	-	-	T	111322027	G	T	111322027	3	4	268	1	0	0	0	0	1	0	0	0	2861	1290	45	2	1073	2	CCDC63	12	111322027	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	7265277	111322027	22529868	328	25232										
DTX1	0	genome.wustl.edu	37	chr12	113533346	113533346	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcctcccaaaagcagcacccGaacagtaacgaccacagcca	6	17	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	113533346	113533346	G	A	SNP	DTX1	ENST00000547730	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DTX1	HGNC	ENSG00000135144	13	0	0	11	5	31.25	-	-	-	A	113533346	G	A	113533346	1	1	268	0	1	0	0	0	0	0	0	0	4828	1073	37	1		1	DTX1	12	113533346	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2211319	113533346	20318549	329	25233										
LRRC43	0	genome.wustl.edu	37	chr12	122685172	122685172	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acaagaaagggaaggagaaaGacaggacggggaaaggagag	18	3	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	122685172	122685172	G	T	SNP	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	missense	c.1585	p.D529Y	0.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	64	0	0	50	10	16.67	-	-	-	T	122685172	G	T	122685172	3	4	268	1	0	0	0	0	1	0	0	0	9067	942	33	2	1619	2	LRRC43	12	122685172	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9151826	122685172	11166723	330	25234										
RSRC2	0	genome.wustl.edu	37	chr12	122995686	122995686	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcttgttgtttttgtttttCaaccatttccttttctcgct	4	9	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	122995686	122995686	C	T	SNP	RSRC2	ENST00000331738	human	ensembl	69_37n	-1	known	missense	c.775	p.E259K	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011	35	0	0	23	6	20.69	-	-	-	T	122995686	C	T	122995686	3	4	268	1	0	0	0	0	1	0	0	0	13801	835	29	2	545	2	RSRC2	12	122995686	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	310514	122995686	10856209	331	25235										
UBC	0	genome.wustl.edu	37	chr12	125397185	125397185	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgaagatctgcatcccacctCtgagacggagcaccaggtgc	11	14	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	125397185	125397185	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.1133	p.R378T	1.000	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	114	0	0	78	17	17.89	-	-	-	G	125397185	C	G	125397185	3	3	268	1	0	0	0	0	1	0	0	0	16939	913	32	2	928	2	UBC	12	125397185	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2401499	125397185	8454710	332	25236										
RIMBP2	0	genome.wustl.edu	37	chr12	130884256	130884256	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgagcgcattggcgtatcttGagagtagtgggatggagcat	16	5	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	130884256	130884256	G	C	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.3100	p.Q1034E	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	58	0	0	25	7	21.88	-	-	-	C	130884256	G	C	130884256	3	2	268	1	0	0	0	0	1	0	0	0	13447	1299	45	2	66	2	RIMBP2	12	130884256	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5487071	130884256	2967639	333	25237										
ULK1	0	genome.wustl.edu	37	chr12	132396527	132396527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctgcagaagaccctggcctCcccggctgacaccgctggct	12	17	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	12	132396527	132396527	C	T	SNP	ULK1	ENST00000321867	human	ensembl	69_37n	1	known	missense	c.989	p.S330F	1.000	superfamily_Kinase-like_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	43	0	0	18	7	28	-	-	-	T	132396527	C	T	132396527	3	4	268	1	0	0	0	0	1	0	0	0	17072	855	30	2	1039	2	ULK1	12	132396527	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1512271	132396527	1455368	334	25238										
SACS	0	genome.wustl.edu	37	chr13	23911546	23911546	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	catatcatcccataaaatatCatcttttgccatacctaact	1	12	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	23911546	23911546	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.6469	p.D2157Y	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	38	0	0	28	9	24.32	-	-	-	A	23911546	C	A	23911546	3	1	268	1	0	0	0	0	1	0	0	0	13890	826	29	2	7274	2	SACS	13	23911546	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		23911546	91258332	335	25239										
SPATA13	0	genome.wustl.edu	37	chr13	24797426	24797426	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttaagaaactgaagtcctCagtcctgaaaggaattcaga	8	8	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	24797426	24797426	C	T	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	1	known	missense	c.359	p.S120L	0.788	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	73	0	0	30	11	26.83	-	-	-	T	24797426	C	T	24797426	3	4	268	1	0	0	0	0	1	0	0	0	15091	838	29	2	361	2	SPATA13	13	24797426	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	885880	24797426	90372452	336	25240										
PARP4	0	genome.wustl.edu	37	chr13	25052268	25052268	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagaggctgtttgcgaaactCcatgcacactgtcgtagcct	10	12	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	25052268	25052268	C	G	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.1595	p.G532A	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	25	0	0	28	10	26.32	-	-	-	G	25052268	C	G	25052268	3	3	268	1	0	0	0	0	1	0	0	0	11536	855	30	2	3667	2	PARP4	13	25052268	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	254842	25052268	90117610	337	25241										
SLC46A3	0	genome.wustl.edu	37	chr13	29275113	29275113	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tctataaaataaagcattacCaagtataggtaaaatcatac	4	6	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	29275113	29275113	C	T	SNP	SLC46A3	ENST00000475385	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	SLC46A3	HGNC	ENSG00000139508	47	0	0	25	9	26.47	-	-	-	T	29275113	C	T	29275113	1	4	268	0	1	0	0	0	0	0	0	0	14735	609	21	4		4	SLC46A3	13	29275113	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4222845	29275113	85894765	338	25242										
PCDH9	0	genome.wustl.edu	37	chr13	67205389	67205389	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cttcagtcctcttgtccggaGaggcctggtcatagaattcg	11	11	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	67205389	67205389	G	A	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.3293	p.S1098F	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	52	0	0	36	7	16.28	-	-	-	A	67205389	G	A	67205389	3	1	268	1	0	0	0	0	1	0	0	0	11591	942	33	2	428	2	PCDH9	13	67205389	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	37930276	67205389	47964489	339	25243										
TBC1D4	0	genome.wustl.edu	37	chr13	75936434	75936434	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtgtcggtgccgtcagcctCctccggcaggcagtctccgg	15	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	75936434	75936434	C	A	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	nonsense	c.808	p.E270*	1.000	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	82	0	0	23	11	32.35	-	-	-	A	75936434	C	A	75936434	4	1	268	1	0	0	0	0	0	1	0	0	15717	864	30	2	3168	2	TBC1D4	13	75936434	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8731045	75936434	39233444	340	25244										
MCF2L	0	genome.wustl.edu	37	chr13	113715001	113715001	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	catcgctttcaaattcaataGagatgactttaagatgaagg	8	6	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	13	113715001	113715001	G	C	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	missense	c.635	p.R212T	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	29	0	0	25	8	24.24	-	-	-	C	113715001	G	C	113715001	3	2	268	1	0	0	0	0	1	0	0	0	9450	942	33	2	748	2	MCF2L	13	113715001	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	37778567	113715001	1454877	341	25245										
C14orf93	0	genome.wustl.edu	37	chr14	23456510	23456510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttggtcaaaagatggggagcCaggtgcattctcatcccctc	11	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	14	23456510	23456510	C	T	SNP	C14orf93	ENST00000299088	human	ensembl	69_37n	-1	known	missense	c.1531	p.G511S	0.997	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802	142	0	0	62	14	18.42	-	-	-	T	23456510	C	T	23456510	3	4	268	1	0	0	0	0	1	0	0	0	1794	594	21	4	89	4	C14orf93	14	23456510	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		23456510	83893030	342	25246										
MYH7	0	genome.wustl.edu	37	chr14	23892757	23892757	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caactctcaatctactcacaTcatccacttgctgctccagc	3	17	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	23892757	23892757	T	C	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.3098	p.D1033G	1.000	superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	78	0	0	41	10	19.23	-	-	-	C	23892757	T	C	23892757	3	2	268	1	0	0	0	0	1	0	0	0	10111	1449	50	5	2777	5	MYH7	14	23892757	Missense_Mutation	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	436247	23892757	83456783	343	25247										
C14orf39	0	genome.wustl.edu	37	chr14	60938273	60938273	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aacaaaaatattaatacctcGaaatttcataaaaattgttt	2	5	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	60938273	60938273	G	A	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	nonsense	c.508	p.R170*	0.993	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	43	0	0	36	12	25	-	-	-	A	60938273	G	A	60938273	4	1	268	1	0	0	0	0	0	1	0	0	1784	1066	37	1	1307	1	C14orf39	14	60938273	Nonsense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	37045516	60938273	46411267	344	25248										
SYT16	0	genome.wustl.edu	37	chr14	62547604	62547604	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cggggtctcagagcccatctCaaagtgtggtgacctagatg	13	10	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	62547604	62547604	C	G	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	nonsense	c.1046	p.S349*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	38	0	0	28	9	24.32	-	-	-	G	62547604	C	G	62547604	4	3	268	1	0	0	0	0	0	1	0	0	15564	838	29	2	1060	2	SYT16	14	62547604	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1609331	62547604	44801936	345	25249										
KIAA0317	0	genome.wustl.edu	37	chr14	75137503	75137503	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actgaaccgggtgaagagctGattggtggtatcaaatagtg	14	5	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	75137503	75137503	G	C	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	missense	c.1570	p.Q524E	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	68	0	0	33	7	17.5	-	-	-	C	75137503	G	C	75137503	3	2	268	1	0	0	0	0	1	0	0	0	8219	1299	45	2	933	2	KIAA0317	14	75137503	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	12589899	75137503	32212037	346	25250										
PROX2	0	genome.wustl.edu	37	chr14	75329873	75329873	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttcctcagaatctctagtGaagctggtgctccagaagga	10	10	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	75329873	75329873	G	A	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.665	p.S222L	0.104	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	39	0	0	32	5	13.51	-	-	-	A	75329873	G	A	75329873	3	1	268	1	0	0	0	0	1	0	0	0	12642	1294	45	2	1129	2	PROX2	14	75329873	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	192370	75329873	32019667	347	25251										
DICER1	0	genome.wustl.edu	37	chr14	95572024	95572024	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taactcattacctgtttattCtgcagactttcccatttggc	5	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	95572024	95572024	C	T	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	silent	c.3084	p.Q1028	1.000	pfam_PAZ,smart_PAZ,pfscan_PAZ	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	46	0	0	25	6	19.35	-	-	-	T	95572024	C	T	95572024	2	4	268	1	0	0	0	0	0	0	0	1	4557	912	32	2		2	DICER1	14	95572024	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	20242151	95572024	11777516	348	25252										
DYNC1H1	0	genome.wustl.edu	37	chr14	102470886	102470886	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgggtgatgaagatttgcttGaaatcattggaaacagcaag	12	4	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	102470886	102470886	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.4915	p.E1639Q	1.000	pfam_Dynein_heavy_dom-2,superfamily_Thioredoxin-like_fold	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	49	0	0	42	11	20.75	-	-	-	C	102470886	G	C	102470886	3	2	268	1	0	0	0	0	1	0	0	0	4876	1291	45	2	5009	2	DYNC1H1	14	102470886	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	6898862	102470886	4878654	349	25253										
CINP	0	genome.wustl.edu	37	chr14	102825882	102825882	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taatttttcttgcactgacaGataagacaggttttctgggc	9	7	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	102825882	102825882	G	C	SNP	CINP	ENST00000536961	human	ensembl	69_37n	-1	known	missense	c.95	p.S32C	0.998	NULL	prints_Cyclin-dep_Kinase_2_interact	-	no_errors	CINP	HGNC	ENSG00000100865	38	0	0	31	8	20.51	-	-	-	C	102825882	G	C	102825882	3	2	268	1	0	0	0	0	1	0	0	0	3460	942	33	2	604	2	CINP	14	102825882	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	354996	102825882	4523658	350	25254										
PLD4	0	genome.wustl.edu	37	chr14	105397278	105397278	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcccaccactgcctacttctCagtaagacgggttgagaagg	11	12	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	14	105397278	105397278	C	G	SNP	PLD4	ENST00000392593	human	ensembl	69_37n	1	known	nonsense	c.917	p.S306*	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	38	0	0	21	7	25	-	-	-	G	105397278	C	G	105397278	4	3	268	1	0	0	0	0	0	1	0	0	12122	840	29	2	939	2	PLD4	14	105397278	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2571396	105397278	1952262	351	25255										
ATP10A	0	genome.wustl.edu	37	chr15	25966966	25966966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagctgcgagtctgtttcttCgtcatacaactgcatgtcct	8	12	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	25966966	25966966	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1201	p.E401K	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	118	0	0	54	16	22.86	-	-	-	T	25966966	C	T	25966966	3	4	268	1	0	0	0	0	1	0	0	0	1120	893	31	1	3358	1	ATP10A	15	25966966	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		25966966	76564426	352	25256										
INO80	0	genome.wustl.edu	37	chr15	41364197	41364197	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccaaacccagtgccagacttGtttgctgcccgtagggcagc	11	14	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	41364197	41364197	G	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	silent	c.1455	p.N485	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	30	0	0	28	10	26.32	-	-	-	A	41364197	G	A	41364197	2	1	268	1	0	0	0	0	0	0	0	1	7800	1368	48	4		4	INO80	15	41364197	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	15397231	41364197	61167195	353	25257										
LTK	0	genome.wustl.edu	37	chr15	41797488	41797488	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagcaggtcccgcatgaccaGaggtgatggctggccctggg	16	12	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	41797488	41797488	G	A	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	silent	c.1843	p.L615	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	63	0	0	38	5	11.63	-	-	-	A	41797488	G	A	41797488	2	1	268	1	0	0	0	0	0	0	0	1	9146	933	33	2		2	LTK	15	41797488	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	433291	41797488	60733904	354	25258										
MGA	0	genome.wustl.edu	37	chr15	41988871	41988871	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agcctcagtggaaatatcctGatatatctgacagcattagc	8	9	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	41988871	41988871	G	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.1663	p.D555N	0.694	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	20	0	0	17	5	22.73	-	-	-	A	41988871	G	A	41988871	3	1	268	1	0	0	0	0	1	0	0	0	9611	1290	45	2	1669	2	MGA	15	41988871	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	191383	41988871	60542521	355	25259										
MGA	0	genome.wustl.edu	37	chr15	42052659	42052659	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgaaatgagggatctctttGagaaattaaagatcacattg	10	4	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	42052659	42052659	G	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.7330	p.E2444K	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	48	0	0	19	11	36.67	-	-	-	A	42052659	G	A	42052659	3	1	268	1	0	0	0	0	1	0	0	0	9611	1291	45	2	7404	2	MGA	15	42052659	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	63788	42052659	60478733	356	25260										
PLA2G4D	0	genome.wustl.edu	37	chr15	42362917	42362917	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggggtgaccagggtacctCgaagggcgcagatagggagt	18	8	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	42362917	42362917	C	G	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.2041	p.E681Q	0.999	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	36	0	0	18	6	25	-	-	-	G	42362917	C	G	42362917	3	3	268	1	0	0	0	0	1	0	0	0	12078	893	31	3	427	3	PLA2G4D	15	42362917	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	310258	42362917	60168475	357	25261										
VPS39	0	genome.wustl.edu	37	chr15	42455562	42455562	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actcacatctttgttgccatCtttgtttcggtcatagtgtt	7	9	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	42455562	42455562	C	A	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	missense	c.2194	p.D732Y	1.000	NULL	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	169	0	0	83	26	23.85	-	-	-	A	42455562	C	A	42455562	3	1	268	1	0	0	0	0	1	0	0	0	17306	913	32	2	486	2	VPS39	15	42455562	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	92645	42455562	60075830	358	25262										
TP53BP1	0	genome.wustl.edu	37	chr15	43701232	43701232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcccactggcaaggcacagGaagtacttccgggttcgaca	11	12	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	43701232	43701232	G	A	SNP	TP53BP1	ENST00000434595	human	ensembl	69_37n	-1	novel	missense	c.422	p.S141F	1.000	superfamily_BRCT_dom	superfamily_BRCT_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TP53BP1	HGNC	ENSG00000067369	48	0	0	35	15	30	-	-	-	A	43701232	G	A	43701232	3	1	268	1	0	0	0	0	1	0	0	0	16479	1165	41	2	482	2	TP53BP1	15	43701232	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1245670	43701232	58830160	359	25263										
SPG11	0	genome.wustl.edu	37	chr15	44865858	44865858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aggcctgggctcgtttgcatCggtcaggctgctgagaggcc	16	11	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	44865858	44865858	C	T	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	missense	c.6092	p.R2031Q	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	31	0	0	34	12	26.09	-	-	-	T	44865858	C	T	44865858	3	4	268	1	0	0	0	0	1	0	0	0	15132	884	31	1	1275	1	SPG11	15	44865858	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1164626	44865858	57665534	360	25264										
CEP152	0	genome.wustl.edu	37	chr15	49030630	49030630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacaattcacactgatctttCctggctccaaatacgtggtt	6	12	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	49030630	49030630	C	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.4949	p.G1650E	0.012	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	71	0	0	53	16	23.19	-	-	-	T	49030630	C	T	49030630	3	4	268	1	0	0	0	0	1	0	0	0	3277	855	30	2	187	2	CEP152	15	49030630	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4164772	49030630	53500762	361	25265										
DMXL2	0	genome.wustl.edu	37	chr15	51828435	51828435	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaggtatgtaaagagttaaTtcgagccaattctgatactc	9	6	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	51828435	51828435	T	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.2242	p.I748L	1.000	smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	52	0	0	28	13	31.71	-	-	-	G	51828435	T	G	51828435	3	3	268	1	0	0	0	0	1	0	0	0	4631	1493	52	5	6999	5	DMXL2	15	51828435	Missense_Mutation	SNP	T	TCGA-AC-A5XS-01A-11D-A29N-09	2797805	51828435	50702957	362	25266										
VPS13C	0	genome.wustl.edu	37	chr15	62228931	62228931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttcattaaaactgtcaagtCatcttcactgagagcaacct	5	10	5	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	62228931	62228931	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.5620	p.D1874H	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	44	0	0	38	6	13.64	-	-	-	G	62228931	C	G	62228931	3	3	268	1	0	0	0	0	1	0	0	0	17288	826	29	2	5821	2	VPS13C	15	62228931	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10400496	62228931	40302461	363	25267										
CLPX	0	genome.wustl.edu	37	chr15	65449253	65449253	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actgccaatcttatctacttCatccagaaagacaattccta	3	12	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	65449253	65449253	C	T	SNP	CLPX	ENST00000300107	human	ensembl	69_37n	-1	known	missense	c.1075	p.E359K	1.000	pfam_ATPase_AAA-2,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	35	0	0	33	7	17.5	-	-	-	T	65449253	C	T	65449253	3	4	268	1	0	0	0	0	1	0	0	0	3586	835	29	2	850	2	CLPX	15	65449253	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3220322	65449253	37082139	364	25268										
IGDCC3	0	genome.wustl.edu	37	chr15	65621781	65621781	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggccggggggaacagctgctCcagctccttcatatccacac	11	15	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	65621781	65621781	C	G	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.2152	p.E718Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	50	0	0	38	8	17.39	-	-	-	G	65621781	C	G	65621781	3	3	268	1	0	0	0	0	1	0	0	0	7622	864	30	2	300	2	IGDCC3	15	65621781	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	172528	65621781	36909611	365	25269										
THAP10	0	genome.wustl.edu	37	chr15	71174841	71174841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccatataagacaaatcactCtgttcactcttgatatccca	4	12	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	71174841	71174841	C	G	SNP	THAP10	ENST00000249861	human	ensembl	69_37n	-1	known	missense	c.726	p.Q242H	0.047	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP10	HGNC	ENSG00000129028	68	0	0	46	9	16.36	-	-	-	G	71174841	C	G	71174841	3	3	268	1	0	0	0	0	1	0	0	0	15937	912	32	2	51	2	THAP10	15	71174841	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5553060	71174841	31356551	366	25270										
THSD4	0	genome.wustl.edu	37	chr15	71952935	71952935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aatgtggggtgtgtggaggaGacaacacgggctgtcaggtt	18	5	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	71952935	71952935	G	A	SNP	THSD4	ENST00000261862	human	ensembl	69_37n	1	known	missense	c.1219	p.D407N	0.998	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720	56	0	0	40	7	14.89	-	-	-	A	71952935	G	A	71952935	3	1	268	1	0	0	0	0	1	0	0	0	15973	942	33	2	1245	2	THSD4	15	71952935	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	778094	71952935	30578457	367	25271										
TBC1D21	0	genome.wustl.edu	37	chr15	74178433	74178433	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgcaggaacacagctgtgtCatcaacattggcgtggccaa	12	10	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	74178433	74178433	C	T	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	silent	c.594	p.V198	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	62	0	0	31	8	20.51	-	-	-	T	74178433	C	T	74178433	2	4	268	1	0	0	0	0	0	0	0	1	15702	813	29	2		2	TBC1D21	15	74178433	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2225498	74178433	28352959	368	25272										
STRA6	0	genome.wustl.edu	37	chr15	74487715	74487715	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcccaggacagcgtgctgccGagcaggtgtgcagctgtgtg	17	11	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	74487715	74487715	G	A	SNP	STRA6	ENST00000563965	human	ensembl	69_37n	-1	known	silent	c.642	p.L214	0.002	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868	37	0	0	24	10	28.57	-	-	-	A	74487715	G	A	74487715	2	1	268	1	0	0	0	0	0	0	0	1	15413	1045	37	1		1	STRA6	15	74487715	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	309282	74487715	28043677	369	25273										
UBE2Q2	0	genome.wustl.edu	37	chr15	76136509	76136509	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtggggtccatggccgccctCagccggcctgctcccgggac	15	17	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	76136509	76136509	C	T	SNP	UBE2Q2	ENST00000562635	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UBE2Q2	HGNC	ENSG00000140367	9	0	0	9	5	35.71	-	-	-	T	76136509	C	T	76136509	1	4	268	0	1	0	0	0	0	0	0	0	16967	841	29	2		2	UBE2Q2	15	76136509	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1648794	76136509	26394883	370	25274										
SCAPER	0	genome.wustl.edu	37	chr15	77046211	77046211	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgcacttctcgcttaaactCagcatgaagtaatttttctt	5	10	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	77046211	77046211	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.1804	p.E602K	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	76	0	0	24	10	29.41	-	-	-	T	77046211	C	T	77046211	3	4	268	1	0	0	0	0	1	0	0	0	13965	835	29	2	2470	2	SCAPER	15	77046211	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	909702	77046211	25485181	371	25275										
HMG20A	0	genome.wustl.edu	37	chr15	77759492	77759492	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaagaggaagaaacctcttcGagacagcaatgcacccaaat	8	10	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	77759492	77759492	G	C	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	1	known	missense	c.293	p.R98P	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20A	HGNC	ENSG00000140382	34	0	0	23	8	25.81	-	-	-	C	77759492	G	C	77759492	3	2	268	1	0	0	0	0	1	0	0	0	7272	1058	37	3	303	3	HMG20A	15	77759492	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	713281	77759492	24771900	372	25276										
AGBL1	0	genome.wustl.edu	37	chr15	86807827	86807827	+	Frame_Shift_Del	DEL	C	C	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gacgtagatgcaattttctgCccaaggatgagtgcctcctt							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	86807827	86807827	C	-	DEL	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	frame_shift_del	c.1287	p.P430fs	0.172	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	34	0	0	30	12	28.57	-	-	-	-	86807827	C	-	86807827	7	5	268	1	0	1	0	1	0	0	0	0	375	747	26	0	1321	0	AGBL1	15	86807827	Frame_Shift_Del	DEL	C	TCGA-AC-A5XS-01A-11D-A29N-09	9048335	86807827	15723565	373	25277										
FANCI	0	genome.wustl.edu	37	chr15	89835994	89835994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tacccttacagcagggagagGaggaagaggaggaggaagag	18	5	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	89835994	89835994	G	A	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.2068	p.E690K	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	31	0	0	28	8	22.22	-	-	-	A	89835994	G	A	89835994	3	1	268	1	0	0	0	0	1	0	0	0	5715	1175	41	2	2146	2	FANCI	15	89835994	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3028167	89835994	12695398	374	25278										
RHCG	0	genome.wustl.edu	37	chr15	90026415	90026415	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actgccccaaaggccacgcaGacagaggccacgcagaagtc	11	15	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	90026415	90026415	G	A	SNP	RHCG	ENST00000268122	human	ensembl	69_37n	-1	known	silent	c.405	p.V135	1.000	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519	49	0	0	30	9	22.5	-	-	-	A	90026415	G	A	90026415	2	1	268	1	0	0	0	0	0	0	0	1	13410	929	33	2		2	RHCG	15	90026415	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	190421	90026415	12504977	375	25279										
MCTP2	0	genome.wustl.edu	37	chr15	94945131	94945131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtcattttttaaaatcagatCttatcaagagatgtggaccg	8	6	4	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	15	94945131	94945131	C	G	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	missense	c.1968	p.I656M	1.000	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	24	0	0	11	4	26.67	-	-	-	G	94945131	C	G	94945131	3	3	268	1	0	0	0	0	1	0	0	0	9472	903	32	2	2030	2	MCTP2	15	94945131	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4918716	94945131	7586261	376	25280										
PKD1	0	genome.wustl.edu	37	chr16	2140187	2140187	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcccttcaaagcggactttGtggcggaactgggggcggca	15	10	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	2140187	2140187	G	C	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.12453	p.H4151Q	1.000	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	13	0	0	10	6	37.5	-	-	-	C	2140187	G	C	2140187	3	2	268	1	0	0	0	0	1	0	0	0	12037	1368	48	4	462	4	PKD1	16	2140187	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		2140187	88214566	377	25281										
ATP6V0C	0	genome.wustl.edu	37	chr16	2564163	2564163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttcgccgtcatgggcgcctCggccgccatggtcttcagcg	13	15	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	2564163	2564163	C	T	SNP	ATP6V0C	ENST00000330398	human	ensembl	69_37n	1	known	missense	c.59	p.S20L	1.000	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,tigrfam_ATPase_V0-cplx_csu_euk	pfam_ATPase_F0/V0-cplx_csu,superfamily_ATPase_F0/V0-cplx_csu,prints_ATPase_V0-cplx_csu,tigrfam_ATPase_V0-cplx_csu_euk	-	no_errors	ATP6V0C	HGNC	ENSG00000185883	49	0	0	44	9	16.98	-	-	-	T	2564163	C	T	2564163	3	4	268	1	0	0	0	0	1	0	0	0	1176	893	31	1	61	1	ATP6V0C	16	2564163	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	423976	2564163	87790590	378	25282										
CIITA	0	genome.wustl.edu	37	chr16	10989267	10989267	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggacctggctggagaagaaGagattgagctctactcaggt	14	7	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	10989267	10989267	G	A	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	missense	c.181	p.E61K	1.000	prints_MHC_II_transact	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	91	0	0	66	14	17.5	-	-	-	A	10989267	G	A	10989267	3	1	268	1	0	0	0	0	1	0	0	0	3457	943	33	2	187	2	CIITA	16	10989267	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8425104	10989267	79365486	379	25283										
NDE1	0	genome.wustl.edu	37	chr16	15818991	15818992	+	RNA	INS	-	-	A													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgaggtatgggactctgatINSaaaaaaaaaaaaaaacacac							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	15818991	15818992	-	A	INS	NDE1	ENST00000571896	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NDE1	HGNC	ENSG00000072864	10	0	0	11	4	26.67	-	-	-	A	15818992	-	A	15818991	6	5	268	0	1	1	1	0	0	0	0	0	10315	1421	49	0		0	NDE1	16	15818991	RNA	INS	-	TCGA-AC-A5XS-01A-11D-A29N-09	4829724	15818991	74535762	380	25284										
UMOD	0	genome.wustl.edu	37	chr16	20362044	20362044	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caccatcagcatccaagtcaGagatggctgccccatccttt	7	15	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	20362044	20362044	G	A	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	silent	c.16	p.L6	0.001	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	78	0	0	97	12	11.01	-	-	-	A	20362044	G	A	20362044	2	1	268	1	0	0	0	0	0	0	0	1	17076	933	33	2		2	UMOD	16	20362044	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4543053	20362044	69992709	381	25285										
DNAH3	0	genome.wustl.edu	37	chr16	21078624	21078624	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctggggaagaatagtctcttCttctccaagtaatcattcag	8	9	5	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	21078624	21078624	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.3498	p.K1166	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	42	0	0	41	5	10.87	-	-	-	T	21078624	C	T	21078624	2	4	268	1	0	0	0	0	0	0	0	1	4639	912	32	2		2	DNAH3	16	21078624	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	716580	21078624	69276129	382	25286										
UBFD1	0	genome.wustl.edu	37	chr16	23568432	23568432	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccctcctccgcccgcccactCtgacaccaccggaaaggatt	7	20	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	23568432	23568432	C	G	SNP	UBFD1	ENST00000219638	human	ensembl	69_37n	1	known	missense	c.41	p.S14C	0.001	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBFD1	HGNC	ENSG00000103353	41	0	0	37	9	19.57	-	-	-	G	23568432	C	G	23568432	3	3	268	1	0	0	0	0	1	0	0	0	16981	928	32	2		2	UBFD1	16	23568432	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2489808	23568432	66786321	383	25287										
XPO6	0	genome.wustl.edu	37	chr16	28187249	28187249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttagtaaaaaagtcgtggtaGaacatgggccaatcctgacg	11	7	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	28187249	28187249	G	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.375	p.F125L	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	43	0	0	48	14	22.58	-	-	-	C	28187249	G	C	28187249	3	2	268	1	0	0	0	0	1	0	0	0	17545	933	33	2	3086	2	XPO6	16	28187249	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4618817	28187249	62167504	384	25288										
SH2B1	0	genome.wustl.edu	37	chr16	28884771	28884771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttaccattcctatccagaacCgaccacctcccatgacccac	3	19	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	28884771	28884771	C	T	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.1901	p.P634L	0.841	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	50	0	0	46	9	16.36	-	-	-	T	28884771	C	T	28884771	3	4	268	1	0	0	0	0	1	0	0	0	14315	652	23	1	2088	1	SH2B1	16	28884771	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	697522	28884771	61469982	385	25289										
SPNS1	0	genome.wustl.edu	37	chr16	28995790	28995790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggaggaggtgggggtccagGagggggatccctctccacag	20	9	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	28995790	28995790	G	A	SNP	SPNS1	ENST00000566059	human	ensembl	69_37n	1	putative	missense	c.1567	p.E523K	0.004	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SPNS1	HGNC	ENSG00000169682	43	0	0	37	9	19.57	-	-	-	A	28995790	G	A	28995790	3	1	268	1	0	0	0	0	1	0	0	0	15165	1189	41	2		2	SPNS1	16	28995790	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	111019	28995790	61358963	386	25290										
ZNF747	0	genome.wustl.edu	37	chr16	30543991	30543991	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccatgccggtcttcaggccGaagcagcggccacactgcgg	14	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	30543991	30543991	G	A	SNP	ZNF747	ENST00000535210	human	ensembl	69_37n	-1	known	silent	c.822	p.F274	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF747	HGNC	ENSG00000169955	79	0	0	74	12	13.95	-	-	-	A	30543991	G	A	30543991	2	1	268	1	0	0	0	0	0	0	0	1	18224	1073	37	1		1	ZNF747	16	30543991	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1548201	30543991	59810762	387	25291										
ZNF668	0	genome.wustl.edu	37	chr16	31073559	31073559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatgagcgggagaagctcttCccgcactcggagcagaggaa	15	10	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	31073559	31073559	C	T	SNP	ZNF668	ENST00000414399	human	ensembl	69_37n	-1	novel	missense	c.208	p.E70K	0.999	NULL	pfscan_Znf_C2H2	-	no_stop_codon	ZNF668	HGNC	ENSG00000167394	52	0	0	70	8	10.26	-	-	-	T	31073559	C	T	31073559	3	4	268	1	0	0	0	0	1	0	0	0	18171	842	30	2	1173	2	ZNF668	16	31073559	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	529568	31073559	59281194	388	25292										
LONP2	0	genome.wustl.edu	37	chr16	48286154	48286154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agattgtacaggtcttaaaaGagaagccatatcccattgct	8	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	48286154	48286154	G	C	SNP	LONP2	ENST00000285737	human	ensembl	69_37n	1	known	missense	c.346	p.E116Q	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N,tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC	ENSG00000102910	68	0	0	28	9	24.32	-	-	-	C	48286154	G	C	48286154	3	2	268	1	0	0	0	0	1	0	0	0	8959	943	33	2	352	2	LONP2	16	48286154	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	17212595	48286154	42068599	389	25293										
KIFC3	0	genome.wustl.edu	37	chr16	57805265	57805265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtcggtcttctgctgcacctCtaggttcagctctgacagca	10	13	5	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	57805265	57805265	C	G	SNP	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	missense	c.610	p.E204Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	52	0	0	13	7	35	-	-	-	G	57805265	C	G	57805265	3	3	268	1	0	0	0	0	1	0	0	0	8366	922	32	2	1956	2	KIFC3	16	57805265	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	9519111	57805265	32549488	390	25294										
SLC7A6OS	0	genome.wustl.edu	37	chr16	68336329	68336329	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctctcctcctctgggtactCattgcgccagttattctcac	7	15	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	68336329	68336329	C	G	SNP	SLC7A6OS	ENST00000263997	human	ensembl	69_37n	-1	known	missense	c.754	p.E252Q	1.000	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061	91	0	0	67	23	25.56	-	-	-	G	68336329	C	G	68336329	3	3	268	1	0	0	0	0	1	0	0	0	14791	835	29	2	183	2	SLC7A6OS	16	68336329	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10531064	68336329	22018424	391	25295										
CDH1	0	genome.wustl.edu	37	chr16	68862100	68862103	+	Frame_Shift_Del	DEL	TTTC	TTTC	-													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgattctgctgctcttgctgTttcttcggaggagagcggtg							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	TTTC	TTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	68862100	68862103	TTTC	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2188_2191	p.L731fs	0.135:0.140:0.115:0.037	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	121	0	0	58	14	19.44	-	-	-	-	68862103	TTTC	-	68862100	7	5	268	1	0	1	0	1	0	0	0	0	3124	1725	60	0	2242	0	CDH1	16	68862100	Frame_Shift_Del	DEL	TTTC	TCGA-AC-A5XS-01A-11D-A29N-09	525771	68862100	21492653	392	25296										
NFAT5	0	genome.wustl.edu	37	chr16	69703977	69703977	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttaatcggcaagaactttctGaaaggaactaaagttatttt	7	5	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	16	69703977	69703977	G	A	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	silent	c.1467	p.L489	0.990	superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	59	0	0	25	16	39.02	-	-	-	A	69703977	G	A	69703977	2	1	268	1	0	0	0	0	0	0	0	1	10432	1277	45	2		2	NFAT5	16	69703977	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	841877	69703977	20650776	393	25297										
ABR	0	genome.wustl.edu	37	chr17	913994	913994	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccctccatgaaggctgggtaGagtcggtccgtgaggagcgg	17	10	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	913994	913994	G	C	SNP	ABR	ENST00000571797	human	ensembl	69_37n	-1	putative	missense	c.185	p.S62C	0.967	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABR	HGNC	ENSG00000159842	67	0	0	39	14	25.93	-	-	-	C	913994	G	C	913994	3	2	268	1	0	0	0	0	1	0	0	0	99	929	33	2	384	2	ABR	17	913994	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		913994	80281216	394	25298										
SLC43A2	0	genome.wustl.edu	37	chr17	1516496	1516496	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aatctgtactcactgttaatGaggtgaaggtcatacacatc	8	8	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	1516496	1516496	G	A	SNP	SLC43A2	ENST00000382147	human	ensembl	69_37n	-1	known	missense	c.494	p.S165L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703	23	0	0	18	4	18.18	-	-	-	A	1516496	G	A	1516496	3	1	268	1	0	0	0	0	1	0	0	0	14722	1294	45	2	1255	2	SLC43A2	17	1516496	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	602502	1516496	79678714	395	25299										
ASGR2	0	genome.wustl.edu	37	chr17	7010407	7010407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cccaggccttcccggagtgaGagaaccagtagcagctgcct	12	14	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	7010407	7010407	G	C	SNP	ASGR2	ENST00000355035	human	ensembl	69_37n	-1	known	missense	c.575	p.S192C	0.961	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR2	HGNC	ENSG00000161944	51	0	0	31	11	26.19	-	-	-	C	7010407	G	C	7010407	3	2	268	1	0	0	0	0	1	0	0	0	1044	942	33	2	372	2	ASGR2	17	7010407	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5493911	7010407	74184803	396	25300										
FXR2	0	genome.wustl.edu	37	chr17	7494804	7494804	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatagcaggggaggccccctGaacggtcaaatctgggtggg	17	9	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	7494804	7494804	G	T	SNP	FXR2	ENST00000573057	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	FXR2	HGNC	ENSG00000129245	34	0	0	15	5	25	-	-	-	T	7494804	G	T	7494804	1	4	268	0	1	0	0	0	0	0	0	0	6165	1305	45	2		2	FXR2	17	7494804	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	484397	7494804	73700406	397	25301										
MYH1	0	genome.wustl.edu	37	chr17	10399732	10399732	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtgctctgcatggactccacGattctaatgtggtttctctt	9	10	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	10399732	10399732	G	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.4791	p.I1597	0.003	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	96	0	0	45	18	28.57	-	-	-	T	10399732	G	T	10399732	2	4	268	1	0	0	0	0	0	0	0	1	10101	1048	37	3		3	MYH1	17	10399732	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2904928	10399732	70795478	398	25302										
MYO15A	0	genome.wustl.edu	37	chr17	18022927	18022927	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggcccctacagcccggcctgGccaccctacggcgaccacta	10	20	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	18022927	18022927	G	C	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.813	p.W271C	0.988	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	30	0	0	12	7	36.84	-	-	-	C	18022927	G	C	18022927	3	2	268	1	0	0	0	0	1	0	0	0	10135	1212	42	4	815	4	MYO15A	17	18022927	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	7623195	18022927	63172283	399	25303										
TOP3A	0	genome.wustl.edu	37	chr17	18205711	18205711	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agcacctcaggaaaaatcctCtgaagccgcagggtctggaa	11	11	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	18205711	18205711	C	G	SNP	TOP3A	ENST00000321105	human	ensembl	69_37n	-1	known	missense	c.681	p.Q227H	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302	38	0	0	27	12	30.77	-	-	-	G	18205711	C	G	18205711	3	3	268	1	0	0	0	0	1	0	0	0	16463	912	32	2	2376	2	TOP3A	17	18205711	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	182784	18205711	62989499	400	25304										
TOP3A	0	genome.wustl.edu	37	chr17	18205912	18205912	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	accaatcctcaggtccagctCctgcctcacatccacagcat	5	18	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	18205912	18205912	C	G	SNP	TOP3A	ENST00000321105	human	ensembl	69_37n	-1	known	missense	c.625	p.E209Q	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302	25	0	0	17	6	26.09	-	-	-	G	18205912	C	G	18205912	3	3	268	1	0	0	0	0	1	0	0	0	16463	864	30	2	2436	2	TOP3A	17	18205912	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	201	18205912	62989298	401	25305										
SEBOX	0	genome.wustl.edu	37	chr17	26691951	26691951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaaggtggtccgctttctccGgtgggaacccaacccgctgc	13	14	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	17	26691951	26691951	G	A	SNP	SEBOX	ENST00000431468	human	ensembl	69_37n	-1	known	missense	c.136	p.R46W	0.057	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SEBOX	HGNC	ENSG00000109072	43	0	0	24	8	25	-	-	-	A	26691951	G	A	26691951	3	1	268	1	0	0	0	0	1	0	0	0	14065	1115	39	1	522	1	SEBOX	17	26691951	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8486039	26691951	54503259	402	25306										
SUZ12	0	genome.wustl.edu	37	chr17	30274681	30274681	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttatcaaaagtagagaaaatGaaaggagagcaagaatctca	9	4	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	30274681	30274681	G	C	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.432	p.M144I	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	50	0	0	38	12	24	-	-	-	C	30274681	G	C	30274681	3	2	268	1	0	0	0	0	1	0	0	0	15507	1290	45	2	446	2	SUZ12	17	30274681	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3582730	30274681	50920529	403	25307										
CNTNAP1	0	genome.wustl.edu	37	chr17	40844691	40844691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgggttctgcggcctatgcCactgcagacctacatctgga	11	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	40844691	40844691	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.2705	p.P902L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	46	0	0	37	10	21.28	-	-	-	T	40844691	C	T	40844691	3	4	268	1	0	0	0	0	1	0	0	0	3676	594	21	4	2771	4	CNTNAP1	17	40844691	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10570010	40844691	40350519	404	25308										
GRN	0	genome.wustl.edu	37	chr17	42427110	42427110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagacgggcgatcctgcttcCaaagatcaggtgcagctggg	14	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	42427110	42427110	C	G	SNP	GRN	ENST00000053867	human	ensembl	69_37n	1	known	missense	c.340	p.Q114E	0.285	pfam_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582	62	0	0	45	11	19.64	-	-	-	G	42427110	C	G	42427110	3	3	268	1	0	0	0	0	1	0	0	0	6855	595	21	4	350	4	GRN	17	42427110	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1582419	42427110	38768100	405	25309										
SPOP	0	genome.wustl.edu	37	chr17	47699344	47699344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgctcctgatgaaaatgtaGaacttttaatgacttcaccc	6	9	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	47699344	47699344	G	C	SNP	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	missense	c.164	p.S55C	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOP	HGNC	ENSG00000121067	76	0	0	47	15	24.19	-	-	-	C	47699344	G	C	47699344	3	2	268	1	0	0	0	0	1	0	0	0	15175	942	33	2	992	2	SPOP	17	47699344	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5272234	47699344	33495866	406	25310										
SPOP	0	genome.wustl.edu	37	chr17	47700145	47700145	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccactcgacatttctgccgGaggtggaggacttggaaccc	13	12	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	17	47700145	47700145	G	T	SNP	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	missense	c.28	p.P10T	1.000	NULL	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOP	HGNC	ENSG00000121067	69	0	0	27	5	15.62	-	-	-	T	47700145	G	T	47700145	3	4	268	1	0	0	0	0	1	0	0	0	15175	1174	41	2	1132	2	SPOP	17	47700145	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	801	47700145	33495065	407	25311										
BZRAP1	0	genome.wustl.edu	37	chr17	56386480	56386480	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtctccagccctggaggactCaggagacaagggacactggc	14	12	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	56386480	56386480	C	G	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	missense	c.4153	p.E1385Q	0.107	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	42	0	0	26	4	13.33	-	-	-	G	56386480	C	G	56386480	3	3	268	1	0	0	0	0	1	0	0	0	1586	835	29	2	1460	2	BZRAP1	17	56386480	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8686335	56386480	24808730	408	25312										
KCNH6	0	genome.wustl.edu	37	chr17	61619699	61619699	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acctactgcgacctgcacaaGatccagcgggcagatctgct	10	14	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	61619699	61619699	G	C	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.2052	p.K684N	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	44	0	0	41	10	19.61	-	-	-	C	61619699	G	C	61619699	3	2	268	1	0	0	0	0	1	0	0	0	8090	933	33	2	2086	2	KCNH6	17	61619699	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5233219	61619699	19575511	409	25313										
KCNJ2	0	genome.wustl.edu	37	chr17	68171873	68171873	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctcatgttcgagcacagctCctcaaatccagaattacttc	6	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	68171873	68171873	C	T	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	silent	c.693	p.L231	0.983	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	28	0	0	21	9	30	-	-	-	T	68171873	C	T	68171873	2	4	268	1	0	0	0	0	0	0	0	1	8105	842	30	2		2	KCNJ2	17	68171873	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6552174	68171873	13023337	410	25314										
OTOP3	0	genome.wustl.edu	37	chr17	72939777	72939777	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccaatgactccatgcaccgaGagatcgaagctgagcttggc	11	12	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	72939777	72939777	G	C	SNP	OTOP3	ENST00000328801	human	ensembl	69_37n	1	known	missense	c.763	p.E255Q	0.948	NULL	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938	64	0	0	32	13	28.89	-	-	-	C	72939777	G	C	72939777	3	2	268	1	0	0	0	0	1	0	0	0	11380	943	33	2	781	2	OTOP3	17	72939777	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	4767904	72939777	8255433	411	25315										
SAP30BP	0	genome.wustl.edu	37	chr17	73686772	73686772	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agaagctcggcacagtgacaGaggcacccagggctcagcaa	13	12	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	73686772	73686772	G	C	SNP	SAP30BP	ENST00000583536	human	ensembl	69_37n	1	novel	missense	c.233	p.R78T	0.000	NULL	pfam_HCNGP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SAP30BP	HGNC	ENSG00000161526	29	0	0	18	7	28	-	-	-	C	73686772	G	C	73686772	3	2	268	1	0	0	0	0	1	0	0	0	13921	957	33	2		2	SAP30BP	17	73686772	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	746995	73686772	7508438	412	25316										
EVPL	0	genome.wustl.edu	37	chr17	74019586	74019586	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgcagctccactcactccttCtcaatctcctcagcctgcgg	6	19	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	74019586	74019586	C	G	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.348	p.E116D	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	100	0	0	43	13	23.21	-	-	-	G	74019586	C	G	74019586	3	3	268	1	0	0	0	0	1	0	0	0	5329	912	32	2	5833	2	EVPL	17	74019586	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	332814	74019586	7175624	413	25317										
MFSD11	0	genome.wustl.edu	37	chr17	74737112	74737112	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggttgccattgtaggacctCaactctctatgtttgccagt	9	10	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	74737112	74737112	C	T	SNP	MFSD11	ENST00000336509	human	ensembl	69_37n	1	known	nonsense	c.226	p.Q76*	1.000	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD11	HGNC	ENSG00000092931	112	0	0	57	23	28.75	-	-	-	T	74737112	C	T	74737112	4	4	268	1	0	0	0	0	0	1	0	0	9600	827	29	2	236	2	MFSD11	17	74737112	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	717526	74737112	6458098	414	25318										
TNRC6C	0	genome.wustl.edu	37	chr17	76060963	76060963	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatcaccctgcagagccgccGgtggcatttggaagagctgg	15	11	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	76060963	76060963	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	silent	c.2547	p.P849	0.000	pfam_Argonaute_hook_dom	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	31	0	0	18	10	35.71	-	-	-	A	76060963	G	A	76060963	2	1	268	1	0	0	0	0	0	0	0	1	16437	1103	39	1		1	TNRC6C	17	76060963	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1323851	76060963	5134247	415	25319										
CYTH1	0	genome.wustl.edu	37	chr17	76705782	76705782	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccgtcggatgttctccagttCttgacgctcctctgctgtca	9	14	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	76705782	76705782	C	A	SNP	CYTH1	ENST00000361101	human	ensembl	69_37n	-1	known	nonsense	c.55	p.E19*	1.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH1	HGNC	ENSG00000108669	44	0	0	46	18	28.12	-	-	-	A	76705782	C	A	76705782	4	1	268	1	0	0	0	0	0	1	0	0	4234	922	32	2	1189	2	CYTH1	17	76705782	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	644819	76705782	4489428	416	25320										
FASN	0	genome.wustl.edu	37	chr17	80039175	80039175	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cacgctcatgagcgagtccaGgcccaggtccgccagtgagc	13	15	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	80039175	80039175	G	A	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	silent	c.6460	p.L2154	1.000	pfam_Acyl_carrier_prot-like,superfamily_Acyl_carrier_prot-like,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	56	0	0	17	4	19.05	-	-	-	A	80039175	G	A	80039175	2	1	268	1	0	0	0	0	0	0	0	1	5729	991	35	4		4	FASN	17	80039175	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3333393	80039175	1156035	417	25321										
FASN	0	genome.wustl.edu	37	chr17	80051518	80051518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccggttggccatcatcgctCgctggcagcccaccatgctg	12	16	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	17	80051518	80051518	C	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.410	p.R137Q	0.996	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	66	0	0	27	12	30.77	-	-	-	T	80051518	C	T	80051518	3	4	268	1	0	0	0	0	1	0	0	0	5729	884	31	1	7285	1	FASN	17	80051518	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	12343	80051518	1143692	418	25322										
EMILIN2	0	genome.wustl.edu	37	chr18	2891396	2891396	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gagagttgctgaagccaccaGaatgctgaatggaagactgg	14	7	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	2891396	2891396	G	A	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.1271	p.R424K	0.991	NULL	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	26	0	0	17	4	19.05	-	-	-	A	2891396	G	A	2891396	3	1	268	1	0	0	0	0	1	0	0	0	5131	942	33	2	1285	2	EMILIN2	18	2891396	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		2891396	75185852	419	25323										
L3MBTL4	0	genome.wustl.edu	37	chr18	6093494	6093494	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgaagtgttgcctcctttttCaagttcatgtctgaatacgg	9	8	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	6093494	6093494	C	T	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	silent	c.1233	p.L411	1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	51	0	0	32	4	11.11	-	-	-	T	6093494	C	T	6093494	2	4	268	1	0	0	0	0	0	0	0	1	8648	825	29	2		2	L3MBTL4	18	6093494	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3202098	6093494	71983754	420	25324										
ANKRD12	0	genome.wustl.edu	37	chr18	9254494	9254494	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaaagccttctatcctaaatCatttaaaagtaaaaaacaaa	3	7	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	9254494	9254494	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.1229	p.S410L	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	44	0	0	15	5	25	-	-	-	T	9254494	C	T	9254494	3	4	268	1	0	0	0	0	1	0	0	0	640	838	29	2	1259	2	ANKRD12	18	9254494	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3161000	9254494	68822754	421	25325										
ZNF521	0	genome.wustl.edu	37	chr18	22804518	22804518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcaatggcactcagattctCattctggcccaagcctggtc	8	14	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	22804518	22804518	C	G	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	missense	c.3364	p.E1122Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	95	0	0	44	11	20	-	-	-	G	22804518	C	G	22804518	3	3	268	1	0	0	0	0	1	0	0	0	18061	835	29	2	591	2	ZNF521	18	22804518	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	13550024	22804518	55272730	422	25326										
PIK3C3	0	genome.wustl.edu	37	chr18	39537606	39537606	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agacccaatgttgaagttctCaggactatatcaagagacat	8	8	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	39537606	39537606	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.140	p.S47L	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	48	0	0	40	9	18.37	-	-	-	T	39537606	C	T	39537606	3	4	268	1	0	0	0	0	1	0	0	0	11986	838	29	2	146	2	PIK3C3	18	39537606	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	16733088	39537606	38539642	423	25327										
ZNF532	0	genome.wustl.edu	37	chr18	56601829	56601829	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagaactgtctgcactacacGaggagagttggttttcggtc	12	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	56601829	56601829	G	A	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	silent	c.2511	p.T837	0.565	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	25	0	0	19	7	26.92	-	-	-	A	56601829	G	A	56601829	2	1	268	1	0	0	0	0	0	0	0	1	18068	1045	37	1		1	ZNF532	18	56601829	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	17064223	56601829	21475419	424	25328										
CDH20	0	genome.wustl.edu	37	chr18	59217294	59217294	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acctgcctatcctgatagcaGatagcgggcagcccgtgctg	12	13	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	59217294	59217294	G	A	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.1732	p.D578N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	43	0	0	20	6	23.08	-	-	-	A	59217294	G	A	59217294	3	1	268	1	0	0	0	0	1	0	0	0	3135	942	33	2	1770	2	CDH20	18	59217294	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2615465	59217294	18859954	425	25329										
PARD6G	0	genome.wustl.edu	37	chr18	77917708	77917708	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccgcctggcggcagcgccagGctgtgacgggggtcggcccg	19	15	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	18	77917708	77917708	G	A	SNP	PARD6G	ENST00000353265	human	ensembl	69_37n	-1	known	silent	c.1077	p.S359	1.000	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184	13	0	0	9	4	30.77	-	-	-	A	77917708	G	A	77917708	2	1	268	1	0	0	0	0	0	0	0	1	11520	1194	42	4		4	PARD6G	18	77917708	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	18700414	77917708	159540	426	25330										
BSG	0	genome.wustl.edu	37	chr19	580451	580451	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cccatgggcacggccaacatCcagctccacggtgagtcctg	11	16	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	580451	580451	C	T	SNP	BSG	ENST00000333511	human	ensembl	69_37n	1	known	silent	c.645	p.I215	0.008	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	BSG	HGNC	ENSG00000172270	36	0	0	32	12	27.27	-	-	-	T	580451	C	T	580451	2	4	268	1	0	0	0	0	0	0	0	1	1537	845	30	2		2	BSG	19	580451	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		580451	58548532	427	25331										
POLRMT	0	genome.wustl.edu	37	chr19	630136	630136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	caccacctccgacacgctctCagcctgcagctgccgcaccc	7	22	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	630136	630136	C	T	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.271	p.E91K	0.086	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	49	0	0	36	4	10	-	-	-	T	630136	C	T	630136	3	4	268	1	0	0	0	0	1	0	0	0	12312	835	29	2	3542	2	POLRMT	19	630136	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	49685	630136	58498847	428	25332										
PTBP1	0	genome.wustl.edu	37	chr19	806554	806554	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggtcagcaacctcaacccaGaggtacgtgggcttttcctc	10	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	806554	806554	G	A	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	missense	c.1117	p.E373K	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	62	0	0	38	10	20.83	-	-	-	A	806554	G	A	806554	3	1	268	1	0	0	0	0	1	0	0	0	12805	943	33	2	1155	2	PTBP1	19	806554	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	176418	806554	58322429	429	25333										
MKNK2	0	genome.wustl.edu	37	chr19	2046591	2046591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccctgtgccctcctccccctCgggcccctcaccagggcggg	11	22	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	2046591	2046591	C	T	SNP	MKNK2	ENST00000589509	human	ensembl	69_37n	-1	putative	missense	c.151	p.E51K	0.001	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	MKNK2	HGNC	ENSG00000099875	85	0	0	43	18	29.51	-	-	-	T	2046591	C	T	2046591	3	4	268	1	0	0	0	0	1	0	0	0	9676	899	31	1		1	MKNK2	19	2046591	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1240037	2046591	57082392	430	25334										
SH2D3A	0	genome.wustl.edu	37	chr19	6754647	6754647	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctctccagcagttccaacctCaagtggtgtccatggggaag	11	12	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	6754647	6754647	C	G	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	missense	c.1077	p.L359F	0.983	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	41	0	0	24	14	36.84	-	-	-	G	6754647	C	G	6754647	3	3	268	1	0	0	0	0	1	0	0	0	14321	825	29	2	673	2	SH2D3A	19	6754647	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4708056	6754647	52374336	431	25335										
FBN3	0	genome.wustl.edu	37	chr19	8182119	8182119	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctgcaccggtagctgccctCagtgttaatacagtgcacgt	11	12	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	19	8182119	8182119	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.3520	p.E1174K	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	53	0	0	19	5	20.83	-	-	-	T	8182119	C	T	8182119	3	4	268	1	0	0	0	0	1	0	0	0	5750	835	29	2	5057	2	FBN3	19	8182119	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1427472	8182119	50946864	432	25336										
MUC16	0	genome.wustl.edu	37	chr19	8993465	8993465	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctccaaatacagctgctctCtgtccagcccagggcctgtg	10	15	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	8993465	8993465	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.41624	p.R13875K	0.238	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	104	0	0	80	27	25.23	-	-	-	T	8993465	C	T	8993465	3	4	268	1	0	0	0	0	1	0	0	0	10045	913	32	2	1975	2	MUC16	19	8993465	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	811346	8993465	50135518	433	25337										
MUC16	0	genome.wustl.edu	37	chr19	9074995	9074995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gctggtttcttccacagaggGagggcttggctgtgatgtat	15	7	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	9074995	9074995	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.12451	p.P4151T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	64	0	0	36	6	14.29	-	-	-	T	9074995	G	T	9074995	3	4	268	1	0	0	0	0	1	0	0	0	10045	1174	41	2	31400	2	MUC16	19	9074995	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	81530	9074995	50053988	434	25338										
OR1M1	0	genome.wustl.edu	37	chr19	9204424	9204424	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgatggcccgtctcgttttCtgcggcagccatgaggtgcc	13	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	9204424	9204424	C	T	SNP	OR1M1	ENST00000429566	human	ensembl	69_37n	1	known	silent	c.504	p.F168	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929	43	0	0	22	7	24.14	-	-	-	T	9204424	C	T	9204424	2	4	268	1	0	0	0	0	0	0	0	1	11041	912	32	2		2	OR1M1	19	9204424	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	129429	9204424	49924559	435	25339										
OR1M1	0	genome.wustl.edu	37	chr19	9204570	9204570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctttgtctgcatcctggcctCctatgctcgcatccttgtgg	9	14	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	9204570	9204570	C	G	SNP	OR1M1	ENST00000429566	human	ensembl	69_37n	1	known	missense	c.650	p.S217C	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929	46	0	0	32	9	21.95	-	-	-	G	9204570	C	G	9204570	3	3	268	1	0	0	0	0	1	0	0	0	11041	855	30	2	652	2	OR1M1	19	9204570	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	146	9204570	49924413	436	25340										
ZNF490	0	genome.wustl.edu	37	chr19	12691625	12691625	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagaaaggctttaccacattCtttacattcgtaagttttct	5	8	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	12691625	12691625	C	G	SNP	ZNF490	ENST00000311437	human	ensembl	69_37n	-1	known	missense	c.1264	p.E422Q	0.528	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033	44	0	0	25	5	16.67	-	-	-	G	12691625	C	G	12691625	3	3	268	1	0	0	0	0	1	0	0	0	18037	922	32	2	329	2	ZNF490	19	12691625	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3487055	12691625	46437358	437	25341										
JUNB	0	genome.wustl.edu	37	chr19	12903464	12903464	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aagcggaagctggagcgcatCgcgcgcctggaggacaaggt	17	10	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	19	12903464	12903464	C	T	SNP	JUNB	ENST00000302754	human	ensembl	69_37n	1	known	silent	c.879	p.I293	1.000	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	pfam_JNK,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223	60	0	0	17	9	34.62	-	-	-	T	12903464	C	T	12903464	2	4	268	1	0	0	0	0	0	0	0	1	8024	874	31	1		1	JUNB	19	12903464	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	211839	12903464	46225519	438	25342										
TRMT1	0	genome.wustl.edu	37	chr19	13218430	13218430	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggaacgctgggctagtctctGatagtcgctcccgtttcacc	11	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	13218430	13218430	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.1541	p.S514L	0.992	NULL	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	43	0	0	29	9	23.68	-	-	-	A	13218430	G	A	13218430	3	1	268	1	0	0	0	0	1	0	0	0	16657	1294	45	2	454	2	TRMT1	19	13218430	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	314966	13218430	45910553	439	25343										
PLVAP	0	genome.wustl.edu	37	chr19	17487789	17487789	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tccaggtcgcggcgagcattCagccacatctgcatgatggc	12	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	17487789	17487789	C	A	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	silent	c.309	p.L103	0.000	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300	37	0	0	37	6	13.95	-	-	-	A	17487789	C	A	17487789	2	1	268	1	0	0	0	0	0	0	0	1	12190	813	29	2		2	PLVAP	19	17487789	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	4269359	17487789	41641194	440	25344										
TM6SF2	0	genome.wustl.edu	37	chr19	19381207	19381207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atagctgtcttcctgaagagCgatgatgaggtccacaaccg	11	10	1	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	19381207	19381207	C	T	SNP	TM6SF2	ENST00000389363	human	ensembl	69_37n	-1	known	missense	c.244	p.A82T	0.183	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996	46	0	0	21	8	27.59	-	-	-	T	19381207	C	T	19381207	3	4	268	1	0	0	0	0	1	0	0	0	16068	768	27	1	921	1	TM6SF2	19	19381207	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1893418	19381207	39747776	441	25345										
ZNF93	0	genome.wustl.edu	37	chr19	20011812	20011812	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actactctgtgtcctgtgctCctacaggcccagcctctgtg	9	15	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	20011812	20011812	C	G	SNP	ZNF93	ENST00000589903	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZNF93	HGNC	ENSG00000184635	43	0	0	47	15	24.19	-	-	-	G	20011812	C	G	20011812	1	3	268	0	1	0	0	0	0	0	0	0	18295	870	30	2		2	ZNF93	19	20011812	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	630605	20011812	39117171	442	25346										
PRODH2	0	genome.wustl.edu	37	chr19	36303267	36303267	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggctccctactcacccactCttggcagcagagtccggctc	9	17	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	36303267	36303267	C	G	SNP	PRODH2	ENST00000301175	human	ensembl	69_37n	-1	known	missense	c.594	p.K198N	0.001	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	66	0	0	32	8	20	-	-	-	G	36303267	C	G	36303267	3	3	268	1	0	0	0	0	1	0	0	0	12630	912	32	2	1052	2	PRODH2	19	36303267	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	16291455	36303267	22825716	443	25347										
ZNF568	0	genome.wustl.edu	37	chr19	37488169	37488169	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	attcacatcttattcgacatCagagtgtccatactggggag	9	9	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	37488169	37488169	C	T	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	nonsense	c.1384	p.Q462*	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	52	0	0	27	11	28.95	-	-	-	T	37488169	C	T	37488169	4	4	268	1	0	0	0	0	0	1	0	0	18095	841	29	2		2	ZNF568	19	37488169	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1184902	37488169	21640814	444	25348										
FAM98C	0	genome.wustl.edu	37	chr19	38893966	38893966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cccgccccctcccgctgcctCggtccccacaggtatggagg	11	20	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	38893966	38893966	C	T	SNP	FAM98C	ENST00000589408	human	ensembl	69_37n	1	putative	missense	c.158	p.S53L	0.069	NULL	pfam_Uncharacterised_FAM98	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM98C	HGNC	ENSG00000130244	31	0	0	27	8	22.86	-	-	-	T	38893966	C	T	38893966	3	4	268	1	0	0	0	0	1	0	0	0	5704	899	31	1		1	FAM98C	19	38893966	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1405797	38893966	20235017	445	25349										
RYR1	0	genome.wustl.edu	37	chr19	38993249	38993249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgccgctctttgcgggcacaGaacaccgcgccatcatggtg	12	15	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	38993249	38993249	G	C	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.7717	p.E2573Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	30	0	0	22	7	24.14	-	-	-	C	38993249	G	C	38993249	3	2	268	1	0	0	0	0	1	0	0	0	13854	943	33	2	7907	2	RYR1	19	38993249	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	99283	38993249	20135734	446	25350										
SAMD4B	0	genome.wustl.edu	37	chr19	39866466	39866466	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcgtggcctcctctggcagtGagcagacagaggagcagggc	17	11	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	39866466	39866466	G	A	SNP	SAMD4B	ENST00000314471	human	ensembl	69_37n	1	known	missense	c.844	p.E282K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134	49	0	0	29	8	21.62	-	-	-	A	39866466	G	A	39866466	3	1	268	1	0	0	0	0	1	0	0	0	13908	1291	45	2	854	2	SAMD4B	19	39866466	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	873217	39866466	19262517	447	25351										
FCGBP	0	genome.wustl.edu	37	chr19	40421295	40421295	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gaagtcgaagcgccggccgtCgaagctcacatagtgtgggt	15	10	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	40421295	40421295	C	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.2626	p.D876H	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	65	0	0	36	9	20	-	-	-	G	40421295	C	G	40421295	3	3	268	1	0	0	0	0	1	0	0	0	5824	884	31	3	13719	3	FCGBP	19	40421295	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	554829	40421295	18707688	448	25352										
TTC9B	0	genome.wustl.edu	37	chr19	40723221	40723221	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgctgcttctccagtaccttGagacagtactcgcgcacgcg	10	14	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	40723221	40723221	G	C	SNP	TTC9B	ENST00000311308	human	ensembl	69_37n	-1	known	silent	c.483	p.L161	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9B	HGNC	ENSG00000174521	72	0	0	38	15	28.3	-	-	-	C	40723221	G	C	40723221	2	2	268	1	0	0	0	0	0	0	0	1	16813	1277	45	2		2	TTC9B	19	40723221	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	301926	40723221	18405762	449	25353										
HIPK4	0	genome.wustl.edu	37	chr19	40895447	40895447	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttgagccgggccagggctgtGagcacctgcagggtgactgt	17	10	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	40895447	40895447	G	C	SNP	HIPK4	ENST00000291823	human	ensembl	69_37n	-1	known	silent	c.363	p.L121	0.871	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396	45	0	0	27	11	28.95	-	-	-	C	40895447	G	C	40895447	2	2	268	1	0	0	0	0	0	0	0	1	7170	1277	45	2		2	HIPK4	19	40895447	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	172226	40895447	18233536	450	25354										
PRX	0	genome.wustl.edu	37	chr19	40900850	40900850	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagccccgcgtcatggccctCagtgaccacctgcccggctg	11	19	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	40900850	40900850	C	T	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.3409	p.E1137K	0.589	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	73	0	0	41	9	18	-	-	-	T	40900850	C	T	40900850	3	4	268	1	0	0	0	0	1	0	0	0	12722	835	29	2	980	2	PRX	19	40900850	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5403	40900850	18228133	451	25355										
POU2F2	0	genome.wustl.edu	37	chr19	42599709	42599709	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggcctcaccgctagaaaactCttctctaaggcgaagcggac	10	13	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	42599709	42599709	C	T	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	silent	c.942	p.K314	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	28	0	0	18	4	18.18	-	-	-	T	42599709	C	T	42599709	2	4	268	1	0	0	0	0	0	0	0	1	12345	912	32	2		2	POU2F2	19	42599709	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1698859	42599709	16529274	452	25356										
POU2F2	0	genome.wustl.edu	37	chr19	42599751	42599751	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttgtctcgatgctggtcctCttcttgcgtctccggccggg	12	13	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	42599751	42599751	C	G	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.900	p.K300N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	28	0	0	17	4	19.05	-	-	-	G	42599751	C	G	42599751	3	3	268	1	0	0	0	0	1	0	0	0	12345	912	32	2	559	2	POU2F2	19	42599751	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	42	42599751	16529232	453	25357										
PVRL2	0	genome.wustl.edu	37	chr19	45375215	45375215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccgcccacctgcccggatctCctggctctcatccctggact	8	20	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	19	45375215	45375215	C	T	SNP	PVRL2	ENST00000252483	human	ensembl	69_37n	1	known	missense	c.584	p.S195F	1.000	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL2	HGNC	ENSG00000130202	84	0	0	46	6	11.32	-	-	-	T	45375215	C	T	45375215	3	4	268	1	0	0	0	0	1	0	0	0	12923	855	30	2	594	2	PVRL2	19	45375215	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2775464	45375215	13753768	454	25358										
FBXO46	0	genome.wustl.edu	37	chr19	46215014	46215014	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agcacccagttgttatcgtgGaggcccaggcggcagccggg	16	12	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	46215014	46215014	G	C	SNP	FBXO46	ENST00000317683	human	ensembl	69_37n	-1	known	silent	c.1740	p.L580	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO46	HGNC	ENSG00000177051	45	0	0	26	13	33.33	-	-	-	C	46215014	G	C	46215014	2	2	268	1	0	0	0	0	0	0	0	1	5801	1161	41	2		2	FBXO46	19	46215014	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	839799	46215014	12913969	455	25359										
BCAT2	0	genome.wustl.edu	37	chr19	49300234	49300234	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtagactctgtctgaccactCcaggcaggataacaccattc	8	13	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	49300234	49300234	C	G	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	missense	c.884	p.G295A	1.000	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	54	0	0	24	9	27.27	-	-	-	G	49300234	C	G	49300234	3	3	268	1	0	0	0	0	1	0	0	0	1359	855	30	2	310	2	BCAT2	19	49300234	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3085220	49300234	9828749	456	25360										
BCAT2	0	genome.wustl.edu	37	chr19	49300250	49300250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cactccaggcaggataacacCattcagcgggggcgtcacca	11	14	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	49300250	49300250	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	missense	c.868	p.G290S	0.979	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	59	0	0	29	8	21.62	-	-	-	T	49300250	C	T	49300250	3	4	268	1	0	0	0	0	1	0	0	0	1359	594	21	4	326	4	BCAT2	19	49300250	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	16	49300250	9828733	457	25361										
VRK3	0	genome.wustl.edu	37	chr19	50511043	50511043	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgagggctcttcctggtcttCtgagggctgcttttgggggt	16	8	3	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	50511043	50511043	C	G	SNP	VRK3	ENST00000316763	human	ensembl	69_37n	-1	known	missense	c.330	p.Q110H	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK3	HGNC	ENSG00000105053	75	0	0	51	16	23.88	-	-	-	G	50511043	C	G	50511043	3	3	268	1	0	0	0	0	1	0	0	0	17318	912	32	2	1134	2	VRK3	19	50511043	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1210793	50511043	8617940	458	25362										
KCNC3	0	genome.wustl.edu	37	chr19	50831835	50831835	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccccagaagccgagctcctCctcaaacaggggcccgcaca	10	18	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	50831835	50831835	C	G	SNP	KCNC3	ENST00000477616	human	ensembl	69_37n	-1	known	missense	c.505	p.E169Q	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	29	0	0	31	4	11.43	-	-	-	G	50831835	C	G	50831835	3	3	268	1	0	0	0	0	1	0	0	0	8070	864	30	2	1784	2	KCNC3	19	50831835	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	320792	50831835	8297148	459	25363										
ZNF611	0	genome.wustl.edu	37	chr19	53208824	53208824	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acttatgaattaaaagatctGaattttgaccaaaggtcttc	6	6	2	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	53208824	53208824	G	A	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.1484	p.S495L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	48	0	0	28	9	24.32	-	-	-	A	53208824	G	A	53208824	3	1	268	1	0	0	0	0	1	0	0	0	18133	1294	45	2	637	2	ZNF611	19	53208824	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2376989	53208824	5920159	460	25364										
ZNF160	0	genome.wustl.edu	37	chr19	53572089	53572089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actttaccacattcattacaCttgtaaggtttctctccaga	4	11	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	53572089	53572089	C	T	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	silent	c.1698	p.K566	0.119	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	69	0	0	45	12	21.05	-	-	-	T	53572089	C	T	53572089	2	4	268	1	0	0	0	0	0	0	0	1	17835	564	20	4		4	ZNF160	19	53572089	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	363265	53572089	5556894	461	25365										
BIRC8	0	genome.wustl.edu	37	chr19	53793412	53793412	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tttatatattcatgtcccttCtcttctagcagatatttgca	4	9	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	53793412	53793412	C	T	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	silent	c.216	p.E72	0.951	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	54	0	0	31	11	26.19	-	-	-	T	53793412	C	T	53793412	2	4	268	1	0	0	0	0	0	0	0	1	1445	912	32	2		2	BIRC8	19	53793412	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	221323	53793412	5335571	462	25366										
EPN1	0	genome.wustl.edu	37	chr19	56190004	56190004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gccgggcaccatgtcgacctCgtccttgaggcgccagatga	13	14	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	56190004	56190004	C	T	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	missense	c.344	p.S115L	0.996	superfamily_ENTH_VHS	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	66	0	0	19	7	26.92	-	-	-	T	56190004	C	T	56190004	3	4	268	1	0	0	0	0	1	0	0	0	5222	893	31	1	354	1	EPN1	19	56190004	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2396592	56190004	2938979	463	25367										
ZNF586	0	genome.wustl.edu	37	chr19	58290814	58290814	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	atcagagagttcacactagaGaaaggccttatgaatgtagt	10	6	2	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	58290814	58290814	G	C	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	missense	c.859	p.E287Q	0.991	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	53	0	0	45	12	21.05	-	-	-	C	58290814	G	C	58290814	3	2	268	1	0	0	0	0	1	0	0	0	18115	943	33	2	869	2	ZNF586	19	58290814	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2100810	58290814	838169	464	25368										
CHMP2A	0	genome.wustl.edu	37	chr19	59063456	59063456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcctcatcacccatggcatCatcaatggcatcattcatca	4	14	7	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	19	59063456	59063456	C	T	SNP	CHMP2A	ENST00000312547	human	ensembl	69_37n	-1	known	missense	c.445	p.D149N	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP2A	HGNC	ENSG00000130724	78	0	0	50	10	16.67	-	-	-	T	59063456	C	T	59063456	3	4	268	1	0	0	0	0	1	0	0	0	3383	826	29	2	235	2	CHMP2A	19	59063456	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	772642	59063456	65527	465	25369										
VPS16	0	genome.wustl.edu	37	chr20	2841103	2841103	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ccctttcctcaggaagtgctCcagaaccgggttctggatgc	11	13	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	2841103	2841103	C	G	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	silent	c.378	p.L126	0.982	pfam_Vps16_N,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	57	0	0	36	10	21.74	-	-	-	G	2841103	C	G	2841103	2	3	268	1	0	0	0	0	0	0	0	1	17290	842	30	2		2	VPS16	20	2841103	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		2841103	60184417	466	25370										
MKKS	0	genome.wustl.edu	37	chr20	10393660	10393660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgacatgctctgtttcctttCtggtgagcatacaggcaggt	11	9	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	10393660	10393660	C	T	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	missense	c.503	p.R168K	0.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	32	0	0	28	5	15.15	-	-	-	T	10393660	C	T	10393660	3	4	268	1	0	0	0	0	1	0	0	0	9671	913	32	2	1225	2	MKKS	20	10393660	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	7552557	10393660	52631860	467	25371										
SPTLC3	0	genome.wustl.edu	37	chr20	13140723	13140723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttccagccactcccctcgcaGaagctcgggctcggttttgt	10	15	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	13140723	13140723	G	A	SNP	SPTLC3	ENST00000399002	human	ensembl	69_37n	1	known	missense	c.1489	p.E497K	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC3	HGNC	ENSG00000172296	48	0	0	43	13	23.21	-	-	-	A	13140723	G	A	13140723	3	1	268	1	0	0	0	0	1	0	0	0	15216	943	33	2	1531	2	SPTLC3	20	13140723	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2747063	13140723	49884797	468	25372										
NXT1	0	genome.wustl.edu	37	chr20	23334771	23334771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tacaccaccatggataagcgGcggcgtttgctgtcccgcct	11	14	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	23334771	23334771	G	A	SNP	NXT1	ENST00000254998	human	ensembl	69_37n	1	known	silent	c.93	p.R31	0.792	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT1	HGNC	ENSG00000132661	47	0	0	50	10	16.67	-	-	-	A	23334771	G	A	23334771	2	1	268	1	0	0	0	0	0	0	0	1	10867	1190	42	4		4	NXT1	20	23334771	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10194048	23334771	39690749	469	25373										
ACSS2	0	genome.wustl.edu	37	chr20	33502156	33502156	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtaagatgctgcattgtggtCaagcacctggggcgggcaga	16	8	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	33502156	33502156	C	T	SNP	ACSS2	ENST00000360596	human	ensembl	69_37n	1	known	silent	c.750	p.V250	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	28	0	0	21	7	25	-	-	-	T	33502156	C	T	33502156	2	4	268	1	0	0	0	0	0	0	0	1	189	813	29	2		2	ACSS2	20	33502156	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10167385	33502156	29523364	470	25374										
RPN2	0	genome.wustl.edu	37	chr20	35858460	35858460	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcactccaaaacaggaaattCaggtatatcccaaagggcct	7	11	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	35858460	35858460	C	T	SNP	RPN2	ENST00000237530	human	ensembl	69_37n	1	known	nonsense	c.1579	p.Q527*	1.000	pfam_Ribophorin_II	pfam_Ribophorin_II	-	no_errors	RPN2	HGNC	ENSG00000118705	59	0	0	35	13	27.08	-	-	-	T	35858460	C	T	35858460	4	4	268	1	0	0	0	0	0	1	0	0	13694	827	29	2	1629	2	RPN2	20	35858460	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	2356304	35858460	27167060	471	25375										
BLCAP	0	genome.wustl.edu	37	chr20	36147634	36147634	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcaccgctgcaggaaccgacCtaatgggagccagcgggcgc	15	14	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	36147634	36147634	C	G	SNP	BLCAP	ENST00000467603	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BLCAP	HGNC	ENSG00000166619	16	0	0	13	4	23.53	-	-	-	G	36147634	C	G	36147634	1	3	268	0	1	0	0	0	0	0	0	0	1447	696	24	4		4	BLCAP	20	36147634	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	289174	36147634	26877886	472	25376										
TOP1	0	genome.wustl.edu	37	chr20	39750723	39750723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggaagttcaagccacagaccGagaggaaaataaacagattg	11	7	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	39750723	39750723	G	A	SNP	TOP1	ENST00000361337	human	ensembl	69_37n	1	known	missense	c.2123	p.R708Q	1.000	superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900	72	0	0	76	10	11.63	-	-	-	A	39750723	G	A	39750723	3	1	268	1	0	0	0	0	1	0	0	0	16459	1058	37	1	2201	1	TOP1	20	39750723	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3603089	39750723	23274797	473	25377										
YWHAB	0	genome.wustl.edu	37	chr20	43534530	43534530	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggtaataatagcctaggttCccccaaagtactgtacaaga	9	9	0	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	43534530	43534530	C	T	SNP	YWHAB	ENST00000479758	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	YWHAB	HGNC	ENSG00000166913	22	0	0	15	6	28.57	-	-	-	T	43534530	C	T	43534530	1	4	268	0	1	0	0	0	0	0	0	0	17598	870	30	2		2	YWHAB	20	43534530	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3783807	43534530	19490990	474	25378										
ZSWIM3	0	genome.wustl.edu	37	chr20	44506608	44506608	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttaccagcctccctgcagaaGagaccaagccagacgcacag	9	15	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	20	44506608	44506608	G	A	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	1	known	missense	c.1411	p.E471K	0.001	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	40	0	0	25	4	13.79	-	-	-	A	44506608	G	A	44506608	3	1	268	1	0	0	0	0	1	0	0	0	18333	943	33	2	1417	2	ZSWIM3	20	44506608	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	972078	44506608	18518912	475	25379										
ELMO2	0	genome.wustl.edu	37	chr20	44999061	44999061	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gtatcactgggccagctactCaaactggcctctctactcac	7	15	4	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	44999061	44999061	C	G	SNP	ELMO2	ENST00000467800	human	ensembl	69_37n	-1	known	nonstop	c.1079	p.*360S	0.000	NULL	pfam_Engulfment_cell_motility_ELMO	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELMO2	HGNC	ENSG00000062598	74	0	0	68	14	17.07	-	-	-	G	44999061	C	G	44999061	4	3	268	1	0	0	0	0	0	0	0	0	5103	841	29	2		2	ELMO2	20	44999061	Nonstop_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	492453	44999061	18026459	476	25380										
AURKA	0	genome.wustl.edu	37	chr20	54961366	54961366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gggtgttattcagtggcctgGagacaggatgaggtacactg	16	6	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	54961366	54961366	G	C	SNP	AURKA	ENST00000312783	human	ensembl	69_37n	-1	known	missense	c.266	p.S89C	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	61	0	0	49	15	23.44	-	-	-	C	54961366	G	C	54961366	3	2	268	1	0	0	0	0	1	0	0	0	1225	1174	41	2	973	2	AURKA	20	54961366	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9962305	54961366	8064154	477	25381										
PSMA7	0	genome.wustl.edu	37	chr20	60714153	60714153	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tccaggcatggtatgtgcccGaggggtcagtctgatagagc	15	9	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	60714153	60714153	G	C	SNP	PSMA7	ENST00000370873	human	ensembl	69_37n	-1	known	missense	c.449	p.S150W	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA7	HGNC	ENSG00000101182	75	0	0	46	13	22.03	-	-	-	C	60714153	G	C	60714153	3	2	268	1	0	0	0	0	1	0	0	0	12752	1059	37	3	313	3	PSMA7	20	60714153	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5752787	60714153	2311367	478	25382										
GTPBP5	0	genome.wustl.edu	37	chr20	60771001	60771001	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aacggtggacacgtcattctGagaggcaggtgccctggggc	16	10	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	60771001	60771001	G	A	SNP	GTPBP5	ENST00000370823	human	ensembl	69_37n	1	known	silent	c.348	p.L116	1.000	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,tigrfam_GTP-bd_Obg/CgtA	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP5	HGNC	ENSG00000101181	54	0	0	41	14	25.45	-	-	-	A	60771001	G	A	60771001	2	1	268	1	0	0	0	0	0	0	0	1	6934	1277	45	2		2	GTPBP5	20	60771001	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	56848	60771001	2254519	479	25383										
ARFRP1	0	genome.wustl.edu	37	chr20	62338084	62338084	+	Missense_Mutation	SNP	G	G	T													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tcgggttttcgactgctccaGgaaggtctgaggagagaggc							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	62338084	62338084	G	T	SNP	ARFRP1	ENST00000324228	human	ensembl	69_37n	-1	known	missense	c.100	p.L34M	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246	92	0	0	96	15	13.51	-	-	-	T	62338084	G	T	62338084	3	4	268	1	0	0	0	0	1	0	0	0	858	991	35	4	533	4	ARFRP1	20	62338084	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1567083	62338084	687436	480	25384	228	2								
ARFRP1	0	genome.wustl.edu	37	chr20	62338085	62338085	+	Silent	SNP	G	G	A													0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgggttttcgactgctccagGaaggtctgaggagagaggca							TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	20	62338085	62338085	G	A	SNP	ARFRP1	ENST00000324228	human	ensembl	69_37n	-1	known	silent	c.99	p.F33	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246	91	0	0	95	15	13.64	-	-	-	A	62338085	G	A	62338085	2	1	268	1	0	0	0	0	0	0	0	1	858	1165	41	2		2	ARFRP1	20	62338085	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	1	62338085	687435	481	25385	228	2								
KRTAP27-1	0	genome.wustl.edu	37	chr21	31709472	31709472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cattgaccagaggtctacagGaactggattcagggttctga	12	8	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	21	31709472	31709472	G	A	SNP	KRTAP27-1	ENST00000382835	human	ensembl	69_37n	-1	known	missense	c.515	p.S172F	0.949	pfam_PMG	pfam_PMG	-	no_errors	KRTAP27-1	HGNC	ENSG00000206107	35	0	0	16	4	20	-	-	-	A	31709472	G	A	31709472	3	1	268	1	0	0	0	0	1	0	0	0	8598	1174	41	2	112	2	KRTAP27-1	21	31709472	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		31709472	16420423	482	25386										
MORC3	0	genome.wustl.edu	37	chr21	37741552	37741552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggttcaacaagcacctcatCatcccgatgcgaccagggaa	9	13	3	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	21	37741552	37741552	C	T	SNP	MORC3	ENST00000400485	human	ensembl	69_37n	1	known	missense	c.1886	p.S629L	0.000	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	55	0	0	44	10	18.52	-	-	-	T	37741552	C	T	37741552	3	4	268	1	0	0	0	0	1	0	0	0	9775	838	29	2	1944	2	MORC3	21	37741552	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6032080	37741552	10388343	483	25387										
MORC3	0	genome.wustl.edu	37	chr21	37742172	37742172	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agagggaccagtataaaagtGaggtgagttatatcatccaa	11	5	1	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	21	37742172	37742172	G	A	SNP	MORC3	ENST00000400485	human	ensembl	69_37n	1	known	missense	c.2506	p.E836K	1.000	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	32	0	0	15	4	21.05	-	-	-	A	37742172	G	A	37742172	3	1	268	1	0	0	0	0	1	0	0	0	9775	1291	45	2	2564	2	MORC3	21	37742172	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	620	37742172	10387723	484	25388										
LCA5L	0	genome.wustl.edu	37	chr21	40777834	40777834	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aattatttttctttttccttCtgtaggtgacgatggcttaa	7	6	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	21	40777834	40777834	C	T	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663K	0.963	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	60	0	0	49	8	14.04	-	-	-	T	40777834	C	T	40777834	3	4	268	1	0	0	0	0	1	0	0	0	8711	922	32	2	29	2	LCA5L	21	40777834	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	3035662	40777834	7352061	485	25389										
ITGB2	0	genome.wustl.edu	37	chr21	46308808	46308808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	acttcaggcactcggcgcagGagctgcggggagccaggtgt	17	11	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	21	46308808	46308808	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1880	p.S627F	0.967	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	55	0	0	28	8	22.22	-	-	-	A	46308808	G	A	46308808	3	1	268	1	0	0	0	0	1	0	0	0	7948	1174	41	2	441	2	ITGB2	21	46308808	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	5530974	46308808	1821087	486	25390										
BCL2L13	0	genome.wustl.edu	37	chr22	18166042	18166042	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttttattaaaagttaaaactGaaattgaagaagagctaaaa	6	2	0	4			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	18166042	18166042	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	69_37n	1	known	missense	c.184	p.E62K	1.000	NULL	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L13	HGNC	ENSG00000099968	47	0	0	25	8	24.24	-	-	-	A	18166042	G	A	18166042	3	1	268	1	0	0	0	0	1	0	0	0	1375	1291	45	2	190	2	BCL2L13	22	18166042	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09		18166042	33138524	487	25391										
MICAL3	0	genome.wustl.edu	37	chr22	18314698	18314698	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ttcctcctcctcctcctcctCttcattcccaggcccaaagc	3	21	2	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	18314698	18314698	C	G	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.2977	p.E993Q	0.993	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	36	0	0	13	5	27.78	-	-	-	G	18314698	C	G	18314698	3	3	268	1	0	0	0	0	1	0	0	0	9642	922	32	2	3079	2	MICAL3	22	18314698	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	148656	18314698	32989868	488	25392										
LZTR1	0	genome.wustl.edu	37	chr22	21348256	21348256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgtagccattgtcacagcgcGgagccgctggcttcgcagga	14	13	1	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-11A-13D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	e8d079cc-6ba2-48d8-847b-a18866c4f15e	22	21348256	21348256	G	A	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	missense	c.1397	p.R466Q	0.977	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	78	0	0	28	4	12.5	-	-	-	A	21348256	G	A	21348256	3	1	268	1	0	0	0	0	1	0	0	0	9204	1116	39	1	1447	1	LZTR1	22	21348256	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	3033558	21348256	29956310	489	25393										
LZTR1	0	genome.wustl.edu	37	chr22	21349225	21349225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tgatcatgatgaaggagttcGagcgcctctcctctccactg	10	12	3	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	21349225	21349225	G	A	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	missense	c.1852	p.E618K	1.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	62	0	0	30	4	11.76	-	-	-	A	21349225	G	A	21349225	3	1	268	1	0	0	0	0	1	0	0	0	9204	1059	37	1	1914	1	LZTR1	22	21349225	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	969	21349225	29955341	490	25394										
INPP5J	0	genome.wustl.edu	37	chr22	31524534	31524534	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aggtgggggtcccagcccctCaggacggaagagccaccgac	15	14	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	31524534	31524534	C	G	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	1	known	nonsense	c.2087	p.S696*	0.952	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	41	0	0	25	4	13.79	-	-	-	G	31524534	C	G	31524534	4	3	268	1	0	0	0	0	0	1	0	0	7813	838	29	2	1017	2	INPP5J	22	31524534	Nonsense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	10175309	31524534	19780032	491	25395										
CDC42EP1	0	genome.wustl.edu	37	chr22	37962796	37962796	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cgacagcagccccaccagctCcacggacggccactccagct	9	20	0	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	37962796	37962796	C	G	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	missense	c.440	p.S147C	0.011	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	50	0	0	23	8	25.81	-	-	-	G	37962796	C	G	37962796	3	3	268	1	0	0	0	0	1	0	0	0	3104	855	30	2	442	2	CDC42EP1	22	37962796	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	6438262	37962796	13341770	492	25396										
TMEM184B	0	genome.wustl.edu	37	chr22	38642041	38642041	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaggcgtagatgggcacgatGaagaggatgcgcacgatgta	16	6	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	22	38642041	38642041	G	T	SNP	TMEM184B	ENST00000361684	human	ensembl	69_37n	-1	known	missense	c.258	p.F86L	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184B	HGNC	ENSG00000198792	25	0	0	15	6	28.57	-	-	-	T	38642041	G	T	38642041	3	4	268	1	0	0	0	0	1	0	0	0	16200	1281	45	2	993	2	TMEM184B	22	38642041	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	679245	38642041	12662525	493	25397										
MXRA5	0	genome.wustl.edu	37	chrX	3241061	3241061	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	agtcttctcggaaaggtcatCaacaacttcctccagaggtg	9	11	4	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	3241061	3241061	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.2665	p.D889N	0.001	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	54	0	0	30	4	11.76	-	-	-	T	3241061	C	T	3241061	3	4	268	1	0	0	0	0	1	0	0	0	10075	826	29	2	5833	2	MXRA5	23	3241061	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09		3241061	152029499	494	25398										
FRMPD4	0	genome.wustl.edu	37	chrX	12627931	12627931	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggaaggtggagatgagaaggGaccccgtgctgggatttggt	19	5	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	12627931	12627931	G	C	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.250	p.D84H	1.000	superfamily_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	77	0	0	29	17	36.96	-	-	-	C	12627931	G	C	12627931	3	2	268	1	0	0	0	0	1	0	0	0	6108	1174	41	2	260	2	FRMPD4	23	12627931	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9386870	12627931	142642629	495	25399										
EGFL6	0	genome.wustl.edu	37	chrX	13618113	13618113	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatgtgaatgagtgtggaatGaaaccccggccatgccaaca	12	9	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	13618113	13618113	G	T	SNP	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	missense	c.300	p.M100I	0.499	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	121	0	0	77	14	15.38	-	-	-	T	13618113	G	T	13618113	3	4	268	1	0	0	0	0	1	0	0	0	4998	1290	45	2	314	2	EGFL6	23	13618113	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	990182	13618113	141652447	496	25400										
GPR64	0	genome.wustl.edu	37	chrX	19039286	19039286	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	catgcattcattgtattattCagttttattgtgaatgtaca	6	5	2	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	19039286	19039286	C	T	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	silent	c.579	p.L193	0.965	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	37	0	0	34	7	17.07	-	-	-	T	19039286	C	T	19039286	2	4	268	1	0	0	0	0	0	0	0	1	6755	813	29	2		2	GPR64	23	19039286	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	5421173	19039286	136231274	497	25401										
DUSP21	0	genome.wustl.edu	37	chrX	44703469	44703469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	aaataaccagaagcttgtttCtcagcaatggtgtggccgcc	10	10	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	44703469	44703469	C	G	SNP	DUSP21	ENST00000339042	human	ensembl	69_37n	1	known	missense	c.91	p.L31V	0.053	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP21	HGNC	ENSG00000189037	56	0	0	29	6	17.14	-	-	-	G	44703469	C	G	44703469	3	3	268	1	0	0	0	0	1	0	0	0	4855	913	32	2	93	2	DUSP21	23	44703469	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	25664183	44703469	110567091	498	25402										
HUWE1	0	genome.wustl.edu	37	chrX	53561010	53561010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gatctgtggacctgtcatctCgatggatctgaaacttctga	10	9	5	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	53561010	53561010	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12980	p.R4327Q	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	55	0	0	44	18	29.03	-	-	-	T	53561010	C	T	53561010	3	4	268	1	0	0	0	0	1	0	0	0	7515	884	31	1	152	1	HUWE1	23	53561010	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	8857541	53561010	101709550	499	25403										
WNK3	0	genome.wustl.edu	37	chrX	54319422	54319422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	taaaacagtggactgaccttGaaccaaaggcaaaatctgcg	9	9	1	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	54319422	54319422	G	C	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.1936	p.Q646E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	62	0	0	43	18	29.51	-	-	-	C	54319422	G	C	54319422	3	2	268	1	0	0	0	0	1	0	0	0	17476	1299	45	2	3526	2	WNK3	23	54319422	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	758412	54319422	100951138	500	25404										
WNK3	0	genome.wustl.edu	37	chrX	54321119	54321119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggtaaagttgtattctggggCtgagggaatacattccccat	12	7	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	54321119	54321119	C	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	silent	c.1560	p.Q520	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	67	0	0	35	14	28.57	-	-	-	T	54321119	C	T	54321119	2	4	268	1	0	0	0	0	0	0	0	1	17476	796	28	4		4	WNK3	23	54321119	Silent	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	1697	54321119	100949441	501	25405										
LAS1L	0	genome.wustl.edu	37	chrX	64743518	64743518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ggggccagtcaagggaggcgGagcagttgaacagcctccag	17	10	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	64743518	64743518	G	A	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.1370	p.S457F	0.035	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	23	0	0	16	7	30.43	-	-	-	A	64743518	G	A	64743518	3	1	268	1	0	0	0	0	1	0	0	0	8690	1174	41	2	850	2	LAS1L	23	64743518	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	10422399	64743518	90527042	502	25406										
STARD8	0	genome.wustl.edu	37	chrX	67939204	67939204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	gcggcttaccgcgttcatggAgaagtacactgtgccccaca	11	13	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	67939204	67939204	A	C	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	missense	c.1853	p.E618A	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	71	0	0	57	12	17.14	-	-	-	C	67939204	A	C	67939204	3	2	268	1	0	0	0	0	1	0	0	0	15354	304	11	5	1879	5	STARD8	23	67939204	Missense_Mutation	SNP	A	TCGA-AC-A5XS-01A-11D-A29N-09	3195686	67939204	87331356	503	25407										
TAF1	0	genome.wustl.edu	37	chrX	70586249	70586249	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagacacggacagcgacgaaGattccgctggaggcggccca	14	13	0	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	70586249	70586249	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.85	p.D29N	1.000	pirsf_TAF1_animal,pfam_TAF_II_230-bd,superfamily_TAF_II_230-bd	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	117	0	0	61	18	22.78	-	-	-	A	70586249	G	A	70586249	3	1	268	1	0	0	0	0	1	0	0	0	15605	942	33	2	87	2	TAF1	23	70586249	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	2647045	70586249	84684311	504	25408										
TAF1	0	genome.wustl.edu	37	chrX	70643863	70643863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	cagttaataagaaatttgttCcagattattacaaagtgatt	6	4	0	3			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	70643863	70643863	C	T	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.4612	p.P1538S	1.000	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	54	0	0	32	4	11.11	-	-	-	T	70643863	C	T	70643863	3	4	268	1	0	0	0	0	1	0	0	0	15605	855	30	2	4797	2	TAF1	23	70643863	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	57614	70643863	84626697	505	25409										
BRWD3	0	genome.wustl.edu	37	chrX	80064047	80064047	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	actttactcaccagatcctcGaagcttcttcggtgctcttt	6	13	3	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	80064047	80064047	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.171	p.F57	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	48	0	0	30	9	23.08	-	-	-	A	80064047	G	A	80064047	2	1	268	1	0	0	0	0	0	0	0	1	1534	1049	37	1		1	BRWD3	23	80064047	Silent	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	9420184	80064047	75206513	506	25410										
HMGN5	0	genome.wustl.edu	37	chrX	80377094	80377094	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tagtcagcagaaaaaaagccGaaggcagtcactgcctgact	10	10	2	2			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	80377094	80377094	G	A	SNP	HMGN5	ENST00000491275	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HMGN5	HGNC	ENSG00000198157	31	0	0	26	6	18.75	-	-	-	A	80377094	G	A	80377094	1	1	268	0	1	0	0	0	0	0	0	0	7289	1073	37	1		1	HMGN5	23	80377094	RNA	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	313047	80377094	74893466	507	25411										
TGIF2LX	0	genome.wustl.edu	37	chrX	89177796	89177796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	tggagctagagaagaagcaaGagcctaatccatgattgatg	12	6	0	5			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	89177796	89177796	G	A	SNP	TGIF2LX	ENST00000283891	human	ensembl	69_37n	1	known	missense	c.712	p.E238K	0.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TGIF2LX	HGNC	ENSG00000153779	85	0	0	52	19	26.76	-	-	-	A	89177796	G	A	89177796	3	1	268	1	0	0	0	0	1	0	0	0	15922	943	33	2	714	2	TGIF2LX	23	89177796	Missense_Mutation	SNP	G	TCGA-AC-A5XS-01A-11D-A29N-09	8800702	89177796	66092764	508	25412										
ZMAT1	0	genome.wustl.edu	37	chrX	101138400	101138400	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctgtatctacctctccttttCttcatcaggtgttccttttt	4	12	5	0			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	101138400	101138400	C	T	SNP	ZMAT1	ENST00000494068	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432	39	0	0	17	4	19.05	-	-	-	T	101138400	C	T	101138400	1	4	268	0	1	0	0	0	0	0	0	0	17787	928	32	2		2	ZMAT1	23	101138400	RNA	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	11960604	101138400	54132160	509	25413										
ACTRT1	0	genome.wustl.edu	37	chrX	127185426	127185426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.552268244575937	280	8.46646329594721e-104	4.05597848885588	4.39910196836005	3.83182117925279	0.00135029885897245	0.0333617601910285	211	ctcgggcacttggtacagctCatccccaaagtggatgacat	10	12	1	1			TCGA-AC-A5XS-01A-11D-A29N-09	TCGA-AC-A5XS-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc7a5f17-00b0-4724-965b-4e2c7d571676	5feed130-1b8e-483b-9187-3e9c6de3d51d	X	127185426	127185426	C	G	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	missense	c.760	p.E254Q	0.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	67	0	0	29	9	23.68	-	-	-	G	127185426	C	G	127185426	3	3	268	1	0	0	0	0	1	0	0	0	218	835	29	2	374	2	ACTRT1	23	127185426	Missense_Mutation	SNP	C	TCGA-AC-A5XS-01A-11D-A29N-09	26047026	127185426	28085134	510	25414										
MASP2	0	genome.wustl.edu	37	chr1	11105481	11105481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tcacctgagcaggtgcgcttGttacggtgcaggacgtagcc	14	11	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	1	11105481	11105481	G	T	SNP	MASP2	ENST00000400897	human	ensembl	69_37n	-1	known	missense	c.528	p.N176K	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	159	0	0	84	21	20	-	-	-	T	11105481	G	T	11105481	3	4	269	1	0	0	0	0	1	0	0	0	9394	1368	48	4	1582	4	MASP2	1	11105481	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		11105481	238145140	1	25415										
CACNA1E	0	genome.wustl.edu	37	chr1	181767517	181767517	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cggcagctcccacccgtcccGccaaagccccggcccctcct	8	24	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	1	181767517	181767517	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	silent	c.6489	p.P2163	0.206	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	43	0	0	32	8	20	-	-	-	A	181767517	G	A	181767517	2	1	269	1	0	0	0	0	0	0	0	1	2567	1074	38	1		1	CACNA1E	1	181767517	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	170662036	181767517	67483104	2	25416										
ZNF648	0	genome.wustl.edu	37	chr1	182026756	182026756	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tgacctaacaatttgtgtgcGagaccactgggaagggaacc	12	9	0	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	1	182026756	182026756	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	44	0	0	32	15	31.91	-	-	-	A	182026756	G	A	182026756	2	1	269	1	0	0	0	0	0	0	0	1	18159	1045	37	1		1	ZNF648	1	182026756	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	259239	182026756	67223865	3	25417										
WDR64	0	genome.wustl.edu	37	chr1	241933895	241933895	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tagcatatcttaaagttttaCctgtgggcttccccactccc	6	13	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	1	241933895	241933895	C	T	SNP	WDR64	ENST00000478331	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR64	HGNC	ENSG00000162843	45	0	0	44	9	16.98	-	-	-	T	241933895	C	T	241933895	1	4	269	0	1	0	0	0	0	0	0	0	17412	522	18	4		4	WDR64	1	241933895	RNA	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	59907139	241933895	7316726	4	25418										
GPR75	0	genome.wustl.edu	37	chr2	54081561	54081561	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cagaaagcatccgggatactActggctgagctgaagaataa	11	8	0	4			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	2	54081561	54081561	A	G	SNP	GPR75	ENST00000394705	human	ensembl	69_37n	-1	known	silent	c.333	p.S111	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR75	HGNC	ENSG00000119737	48	0	0	24	15	38.46	-	-	-	G	54081561	A	G	54081561	2	3	269	1	0	0	0	0	0	0	0	1	6758	388	14	5		5	GPR75	2	54081561	Silent	SNP	A	TCGA-AC-A5XU-01A-11D-A28B-09		54081561	189117812	5	25419										
CCDC74B	0	genome.wustl.edu	37	chr2	130898839	130898839	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cagcttttgaatcttgcttgTtgaaggagccgggctggggc	15	8	1	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	2	130898839	130898839	T	C	SNP	CCDC74B	ENST00000392984	human	ensembl	69_37n	-1	known	missense	c.881	p.N294S	0.598	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	97	0	0	64	8	11.11	-	-	-	C	130898839	T	C	130898839	3	2	269	1	0	0	0	0	1	0	0	0	2875	1725	60	5	587	5	CCDC74B	2	130898839	Missense_Mutation	SNP	T	TCGA-AC-A5XU-01A-11D-A28B-09	76817278	130898839	112300534	6	25420										
MAP2	0	genome.wustl.edu	37	chr2	210518057	210518057	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tcccatacagggaggatgaaGagggtgcctttggagagcat	15	7	0	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	2	210518057	210518057	G	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	nonsense	c.163	p.E55*	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	55	0	0	19	18	48.65	-	-	-	T	210518057	G	T	210518057	4	4	269	1	0	0	0	0	0	1	0	0	9306	943	33	2	165	2	MAP2	2	210518057	Nonsense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	79619218	210518057	32681316	7	25421										
OBSL1	0	genome.wustl.edu	37	chr2	220435007	220435007	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttgcgcgcggcgcagacgtaGagcccacgatccttggcctg	14	14	0	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	2	220435007	220435007	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.948	p.L316	0.967	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	19	0	0	9	5	35.71	-	-	-	A	220435007	G	A	220435007	2	1	269	1	0	0	0	0	0	0	0	1	10886	929	33	2		2	OBSL1	2	220435007	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	9916950	220435007	22764366	8	25422										
THUMPD3	0	genome.wustl.edu	37	chr3	9406884	9406884	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtcactattggagccactgtAcctactggctttgagcaaac	9	11	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	3	9406884	9406884	A	G	SNP	THUMPD3	ENST00000345094	human	ensembl	69_37n	1	known	silent	c.132	p.V44	0.975	NULL	pfam_RNA_methylase_dom,pfam_THUMP,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD3	HGNC	ENSG00000134077	74	0	0	40	17	29.82	-	-	-	G	9406884	A	G	9406884	2	3	269	1	0	0	0	0	0	0	0	1	15979	378	14	5		5	THUMPD3	3	9406884	Silent	SNP	A	TCGA-AC-A5XU-01A-11D-A28B-09		9406884	188615546	9	25423										
ADAMTS9	0	genome.wustl.edu	37	chr3	64536720	64536720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cttgcggtacctggagccttCgccgcaggtcttggtgcact	13	13	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	3	64536720	64536720	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4717	p.E1573K	0.807	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	98	0	0	81	23	22.12	-	-	-	T	64536720	C	T	64536720	3	4	269	1	0	0	0	0	1	0	0	0	273	893	31	1	1126	1	ADAMTS9	3	64536720	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	55129836	64536720	133485710	10	25424										
PLSCR4	0	genome.wustl.edu	37	chr3	145912230	145912230	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttgtggtggagatctttcaaAatacatgaagtcctgaaatt	9	5	2	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	3	145912230	145912230	A	C	SNP	PLSCR4	ENST00000354952	human	ensembl	69_37n	-1	known	missense	c.958	p.F320V	1.000	pfam_Scramblase	pfam_Scramblase	-	no_errors	PLSCR4	HGNC	ENSG00000114698	151	0	0	10	79	88.76	-	-	-	C	145912230	A	C	145912230	3	2	269	1	0	0	0	0	1	0	0	0	12186	14	1	5	35	5	PLSCR4	3	145912230	Missense_Mutation	SNP	A	TCGA-AC-A5XU-01A-11D-A28B-09	81375510	145912230	52110200	11	25425										
WFS1	0	genome.wustl.edu	37	chr4	6304103	6304103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tctcacccaccaggcggcacGtgaagatcgagcacgactgg	12	14	1	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	4	6304103	6304103	G	A	SNP	WFS1	ENST00000226760	human	ensembl	69_37n	1	known	missense	c.2581	p.V861M	1.000	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501	100	0	0	46	7	13.21	-	-	-	A	6304103	G	A	6304103	3	1	269	1	0	0	0	0	1	0	0	0	17457	1145	40	1	2607	1	WFS1	4	6304103	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		6304103	184850173	12	25426										
KCNIP4	0	genome.wustl.edu	37	chr4	20731675	20731675	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tggtagaatagttcacatttGtctgttggattcaggatcta	10	5	4	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	4	20731675	20731675	G	A	SNP	KCNIP4	ENST00000382149	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KCNIP4	HGNC	ENSG00000185774	57	0	0	39	6	13.33	-	-	-	A	20731675	G	A	20731675	1	1	269	0	1	0	0	0	0	0	0	0	8096	1392	48	4		4	KCNIP4	4	20731675	RNA	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	14427572	20731675	170422601	13	25427										
AASDH	0	genome.wustl.edu	37	chr4	57250392	57250392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	aaactggaagctggttgttgCattcatcaaaacatacagct	8	8	2	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	4	57250392	57250392	C	G	SNP	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	missense	c.74	p.C25S	0.936	NULL	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	60	0	0	31	11	26.19	-	-	-	G	57250392	C	G	57250392	3	3	269	1	0	0	0	0	1	0	0	0	22	710	25	4	3278	4	AASDH	4	57250392	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	36518717	57250392	133903884	14	25428										
SPEF2	0	genome.wustl.edu	37	chr5	35807318	35807318	+	Frame_Shift_Del	DEL	A	A	-													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cttgaagcatccttttattcAagacctgatttcaaattatt							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	5	35807318	35807318	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	frame_shift_del	c.5342	p.D1782fs	1.000	pfam_HATC	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	46	0	0	13	2	13.33	-	-	-	-	35807318	A	-	35807318	7	5	269	1	0	1	0	1	0	0	0	0	15126	130	5	0	5505	0	SPEF2	5	35807318	Frame_Shift_Del	DEL	A	TCGA-AC-A5XU-01A-11D-A28B-09		35807318	145107942	15	25429										
PCDHA5	0	genome.wustl.edu	37	chr5	140203028	140203028	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ctgcaggtgttcgtgctggaCgagaacgacaacgcgccggc	15	12	0	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	5	140203028	140203028	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	silent	c.1668	p.D556	0.995	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	174	0	0	92	41	30.83	-	-	-	T	140203028	C	T	140203028	2	4	269	1	0	0	0	0	0	0	0	1	11600	535	19	1		1	PCDHA5	5	140203028	Silent	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	104395710	140203028	40712232	16	25430										
GABBR1	0	genome.wustl.edu	37	chr6	29589896	29589896	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ctgaccttcaggtttttgacGggcacagctggatctgagaa	12	9	2	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	6	29589896	29589896	G	A	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	silent	c.1050	p.P350	0.952	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	76	0	0	38	11	22.45	-	-	-	A	29589896	G	A	29589896	2	1	269	1	0	0	0	0	0	0	0	1	6204	1103	39	1		1	GABBR1	6	29589896	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		29589896	141525171	17	25431										
HMGA1	0	genome.wustl.edu	37	chr6	34208614	34208616	+	In_Frame_Del	DEL	CGG	CGG	-													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gcctccaagcaggaaaaggaCggcactgagaagcggggccg							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	6	34208614	34208616	CGG	-	DEL	HMGA1	ENST00000395004	human	ensembl	69_37n	1	known	in_frame_del	c.57_59	p.G20in_frame_del	0.990:1.000:1.000	NULL	prints_HMGI/HMGY,prints_AT_hook-like	-	no_errors	HMGA1	HGNC	ENSG00000137309	112	0	0	64	12	15.38	-	-	-	-	34208616	CGG	-	34208614	7	5	269	1	0	1	0	1	0	0	0	0	7274	535	19	0	59	0	HMGA1	6	34208614	In_Frame_Del	DEL	CGG	TCGA-AC-A5XU-01A-11D-A28B-09	4618718	34208614	136906453	18	25432										
OPN5	0	genome.wustl.edu	37	chr6	47754321	47754321	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cgaaagaagaagctgagaccCgctgaaataatgactatcaa	9	8	1	5			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	6	47754321	47754321	C	T	SNP	OPN5	ENST00000371211	human	ensembl	69_37n	1	known	silent	c.201	p.P67	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Peropsin	-	no_errors	OPN5	HGNC	ENSG00000124818	97	0	0	89	10	10.1	-	-	-	T	47754321	C	T	47754321	2	4	269	1	0	0	0	0	0	0	0	1	10956	639	23	1		1	OPN5	6	47754321	Silent	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	13545707	47754321	123360746	19	25433										
TAGAP	0	genome.wustl.edu	37	chr6	159457355	159457355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ggggtctcaggcagaagccgCgggctgtttggttgtgggtt	19	7	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	6	159457355	159457355	C	T	SNP	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	missense	c.1700	p.R567H	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	41	0	0	33	7	17.5	-	-	-	T	159457355	C	T	159457355	3	4	269	1	0	0	0	0	1	0	0	0	15629	768	27	1	499	1	TAGAP	6	159457355	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	111703034	159457355	11657712	20	25434										
MCM7	0	genome.wustl.edu	37	chr7	99696938	99696938	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cagcagggtactggttctggGggcttcggaccatcccaggg	16	11	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	7	99696938	99696938	G	C	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	missense	c.365	p.P122R	1.000	superfamily_NA-bd_OB-fold-like	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	40	0	0	29	5	14.71	-	-	-	C	99696938	G	C	99696938	3	2	269	1	0	0	0	0	1	0	0	0	9463	1232	43	4	1842	4	MCM7	7	99696938	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		99696938	59441725	21	25435										
TES	0	genome.wustl.edu	37	chr7	115850679	115850679	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gagttccgcaggtttcccgtGttcgcagcggagccggaggc	16	12	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	7	115850679	115850679	G	T	SNP	TES	ENST00000496871	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TES	HGNC	ENSG00000135269	66	0	0	40	11	21.57	-	-	-	T	115850679	G	T	115850679	1	4	269	0	1	0	0	0	0	0	0	0	15860	1392	48	4		4	TES	7	115850679	RNA	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	16153741	115850679	43287984	22	25436										
CCDC136	0	genome.wustl.edu	37	chr7	128441410	128441410	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtgacatagcatccctgcagGaggatctctgccggatgcag	13	11	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	7	128441410	128441410	G	T	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	nonsense	c.517	p.E173*	1.000	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	27	0	0	13	20	60.61	-	-	-	T	128441410	G	T	128441410	4	4	269	1	0	0	0	0	0	1	0	0	2795	1175	41	2	531	2	CCDC136	7	128441410	Nonsense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	12590731	128441410	30697253	23	25437										
DPP6	0	genome.wustl.edu	37	chr7	154002495	154002495	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ggactaaaatcacactcctcCttaccttaccgcttggactc	5	15	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	7	154002495	154002495	C	A	SNP	DPP6	ENST00000496611	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DPP6	HGNC	ENSG00000130226	79	0	0	48	10	17.24	-	-	-	A	154002495	C	A	154002495	1	1	269	0	1	0	0	0	0	0	0	0	4765	696	24	4		4	DPP6	7	154002495	RNA	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	25561085	154002495	5136168	24	25438										
DPP6	0	genome.wustl.edu	37	chr7	154672641	154672641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttgacaggacgcgcgtggccGtgtttgggaaggtgagtctg	18	7	1	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	7	154672641	154672641	G	A	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.2122	p.V708M	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	59	0	0	48	11	18.64	-	-	-	A	154672641	G	A	154672641	3	1	269	1	0	0	0	0	1	0	0	0	4765	1145	40	1	2320	1	DPP6	7	154672641	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	670146	154672641	4466022	25	25439										
ZNF623	0	genome.wustl.edu	37	chr8	144732992	144732992	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gagaattcacaccggagagaGaccctttgaatgcaatgagt	11	8	1	5			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	8	144732992	144732992	G	A	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	missense	c.950	p.R317K	0.918	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	57	0	0	38	17	30.91	-	-	-	A	144732992	G	A	144732992	3	1	269	1	0	0	0	0	1	0	0	0	18143	942	33	2	952	2	ZNF623	8	144732992	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		144732992	1631030	26	25440										
CD72	0	genome.wustl.edu	37	chr9	35617158	35617158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttggccccgcggctgccccgCacaggcacactcacagggga	13	17	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	9	35617158	35617158	C	T	SNP	CD72	ENST00000378430	human	ensembl	69_37n	-1	known	missense	c.277	p.A93T	0.000	NULL	NULL	-	no_errors	CD72	HGNC	ENSG00000137101	48	0	0	12	8	40	-	-	-	T	35617158	C	T	35617158	3	4	269	1	0	0	0	0	1	0	0	0	3063	725	25	4		4	CD72	9	35617158	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		35617158	105596273	27	25441										
OMD	0	genome.wustl.edu	37	chr9	95177547	95177547	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttcactttcatcatcatcatCtggaaatctcctgaaaactt	3	11	7	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	9	95177547	95177547	C	G	SNP	OMD	ENST00000375550	human	ensembl	69_37n	-1	known	missense	c.1153	p.D385H	0.560	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMD	HGNC	ENSG00000127083	187	0	0	68	55	44.72	-	-	-	G	95177547	C	G	95177547	3	3	269	1	0	0	0	0	1	0	0	0	10938	913	32	2	116	2	OMD	9	95177547	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	59560389	95177547	46035884	28	25442										
C9orf89	0	genome.wustl.edu	37	chr9	95874071	95874071	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cggcctggcggccccaggagGcagcagcaaccttgggcttc	15	15	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	9	95874071	95874071	G	A	SNP	C9orf89	ENST00000488630	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf89	HGNC	ENSG00000165233	67	0	0	35	9	20.45	-	-	-	A	95874071	G	A	95874071	1	1	269	0	1	0	0	0	0	0	0	0	2528	1218	42	4		4	C9orf89	9	95874071	RNA	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	696524	95874071	45339360	29	25443										
IFIT2	0	genome.wustl.edu	37	chr10	91066002	91066003	+	Frame_Shift_Ins	INS	-	-	G													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	aatcagaagtctggtcacctINSggggaaactatgcctgggtc							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	10	91066002	91066003	-	G	INS	IFIT2	ENST00000371826	human	ensembl	69_37n	1	known	frame_shift_ins	c.289_290	p.N99fs	1.000:1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922	53	0	0	15	5	25	-	-	-	G	91066003	-	G	91066002	7	5	269	1	0	1	1	0	0	0	0	0	7577	1580	55	0	295	0	IFIT2	10	91066002	Frame_Shift_Ins	INS	-	TCGA-AC-A5XU-01A-11D-A28B-09		91066002	44468745	30	25444										
CARS	0	genome.wustl.edu	37	chr11	3061080	3061080	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tttaccttgtcatcaatatcCgtaatgttcatgcaataaaa	4	8	3	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	11	3061080	3061080	C	A	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	silent	c.537	p.T179	0.111	pfam_Cys-tRNA/MSH_ligase,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	69	0	0	33	10	23.26	-	-	-	A	3061080	C	A	3061080	2	1	269	1	0	0	0	0	0	0	0	1	2682	639	23	3		3	CARS	11	3061080	Silent	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		3061080	131945436	31	25445										
SIPA1	0	genome.wustl.edu	37	chr11	65417234	65417234	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cttctgtggcacaggacaggCcaggcagtcccagtggctct	13	13	2	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	11	65417234	65417234	C	A	SNP	SIPA1	ENST00000394224	human	ensembl	69_37n	1	known	missense	c.2644	p.P882T	0.000	NULL	pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1	HGNC	ENSG00000213445	53	0	0	23	9	28.12	-	-	-	A	65417234	C	A	65417234	3	1	269	1	0	0	0	0	1	0	0	0	14417	739	26	4	2686	4	SIPA1	11	65417234	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	62356154	65417234	69589282	32	25446										
FAT3	0	genome.wustl.edu	37	chr11	92620185	92620185	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gacaaaggggttgatgacccGggagaagtgacctgctttgc	15	8	0	4			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	11	92620185	92620185	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.12957	p.P4319	0.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	84	0	0	35	11	23.91	-	-	-	T	92620185	G	T	92620185	2	4	269	1	0	0	0	0	0	0	0	1	5737	1103	39	3		3	FAT3	11	92620185	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	27202951	92620185	42386331	33	25447										
NTM	0	genome.wustl.edu	37	chr11	132177693	132177693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	acgtggccgcgcccgtggtaCggagagtaaaggtcaccgtg	16	11	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	11	132177693	132177693	C	T	SNP	NTM	ENST00000539799	human	ensembl	69_37n	1	known	missense	c.637	p.R213W	0.990	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NTM	HGNC	ENSG00000182667	83	0	0	17	11	39.29	-	-	-	T	132177693	C	T	132177693	3	4	269	1	0	0	0	0	1	0	0	0	10772	527	19	1	737	1	NTM	11	132177693	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	39557508	132177693	2828823	34	25448										
OVCH1	0	genome.wustl.edu	37	chr12	29630469	29630469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	aaaagtggtggaaacttacaCgtttgttttgttttccatcg	9	6	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	12	29630469	29630469	C	T	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	missense	c.1112	p.R371H	0.000	superfamily_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	34	0	0	16	9	36	-	-	-	T	29630469	C	T	29630469	3	4	269	1	0	0	0	0	1	0	0	0	11396	550	19	1	2368	1	OVCH1	12	29630469	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		29630469	104221426	35	25449										
CACNB3	0	genome.wustl.edu	37	chr12	49220166	49220166	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	atagcggaagtgcagagtgaGatcgagcgcatatttgagct	14	6	0	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	12	49220166	49220166	G	A	SNP	CACNB3	ENST00000301050	human	ensembl	69_37n	1	known	silent	c.759	p.E253	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	40	0	0	32	5	13.51	-	-	-	A	49220166	G	A	49220166	2	1	269	1	0	0	0	0	0	0	0	1	2579	933	33	2		2	CACNB3	12	49220166	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	19589697	49220166	84631729	36	25450										
LMBR1L	0	genome.wustl.edu	37	chr12	49503575	49503575	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ctctaagtggcagggagggcGtaaggaacagcagccaggta	16	8	1	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	12	49503575	49503575	G	A	SNP	LMBR1L	ENST00000547670	human	ensembl	69_37n	-1	known	silent	c.162	p.Y54	0.000	NULL	NULL	-	no_errors	LMBR1L	HGNC	ENSG00000139636	62	0	0	61	9	12.86	-	-	-	A	49503575	G	A	49503575	2	1	269	1	0	0	0	0	0	0	0	1	8897	1160	40	1		1	LMBR1L	12	49503575	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	283409	49503575	84348320	37	25451										
PARP4	0	genome.wustl.edu	37	chr13	25029332	25029332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtcgacatcgagatcgggttGaaagacaagcatgcaagcct	12	9	0	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	13	25029332	25029332	G	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.2581	p.Q861E	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	28	0	0	17	11	39.29	-	-	-	C	25029332	G	C	25029332	3	2	269	1	0	0	0	0	1	0	0	0	11536	1299	45	2	2645	2	PARP4	13	25029332	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		25029332	90140546	38	25452										
MMP14	0	genome.wustl.edu	37	chr14	23313595	23313595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tccaggagcgctggttctggCgggtgaggaataaccaagtg	16	8	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	14	23313595	23313595	C	T	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	1	known	missense	c.1027	p.R343W	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	67	0	0	42	9	17.65	-	-	-	T	23313595	C	T	23313595	3	4	269	1	0	0	0	0	1	0	0	0	9724	759	27	1	1053	1	MMP14	14	23313595	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		23313595	84035945	39	25453										
TBC1D2B	0	genome.wustl.edu	37	chr15	78305170	78305170	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtgctgtgcacccacctgttTaggccttgacagtagccgat	11	12	0	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	15	78305170	78305170	T	A	SNP	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	silent	c.2265	p.L755	0.009	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	64	0	0	43	12	21.82	-	-	-	A	78305170	T	A	78305170	2	1	269	1	0	0	0	0	0	0	0	1	15711	1741	61	5		5	TBC1D2B	15	78305170	Silent	SNP	T	TCGA-AC-A5XU-01A-11D-A28B-09		78305170	24226222	40	25454										
SEPT12	0	genome.wustl.edu	37	chr16	4834057	4834057	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	tgctcgttgatgtagcccagGatggggtcccagctgaggcg	16	10	0	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	16	4834057	4834057	G	A	SNP	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	silent	c.387	p.I129	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	65	0	0	58	7	10.77	-	-	-	A	4834057	G	A	4834057	2	1	269	1	0	0	0	0	0	0	0	1	14150	1164	41	2		2	SEPT12	16	4834057	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		4834057	85520696	41	25455										
TP53	0	genome.wustl.edu	37	chr17	7574002	7574002	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ccaaggcctcattcagctctCggaacatctcgaagcgctca	8	15	5	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	17	7574002	7574002	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342P	0.071	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	35	0	0	5	5	50	-	-	-	G	7574002	C	G	7574002	3	3	269	1	0	0	0	0	1	0	0	0	16477	884	31	3	164	3	TP53	17	7574002	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		7574002	73621208	42	25456										
EFCAB5	0	genome.wustl.edu	37	chr17	28384802	28384802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtttgtgcaactcctggagaCatttgttggtgaagacgctc	12	8	0	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	17	28384802	28384802	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.2474	p.T825I	0.997	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	72	0	0	65	25	27.78	-	-	-	T	28384802	C	T	28384802	3	4	269	1	0	0	0	0	1	0	0	0	4973	478	17	4	2524	4	EFCAB5	17	28384802	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	20810800	28384802	52810408	43	25457										
SUZ12	0	genome.wustl.edu	37	chr17	30303623	30303623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ttgcacaaatgacagtatttGataaaaacaggtaatgttga	8	4	0	3			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	17	30303623	30303623	G	C	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.907	p.D303H	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	61	0	0	31	11	26.19	-	-	-	C	30303623	G	C	30303623	3	2	269	1	0	0	0	0	1	0	0	0	15507	1290	45	2	937	2	SUZ12	17	30303623	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	1918821	30303623	50891587	44	25458										
ESCO1	0	genome.wustl.edu	37	chr18	19110361	19110361	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	agaaattgaccagtgccacaGtactgtgttgcaaacagctt	9	9	0	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	18	19110361	19110361	G	T	SNP	ESCO1	ENST00000269214	human	ensembl	69_37n	-1	known	nonsense	c.2466	p.Y822*	1.000	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446	45	0	0	27	3	10	-	-	-	T	19110361	G	T	19110361	4	4	269	1	0	0	0	0	0	1	0	0	5285	1024	36	4	60	4	ESCO1	18	19110361	Nonsense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		19110361	58966887	45	25459										
CCDC68	0	genome.wustl.edu	37	chr18	52608233	52608233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gcaggaaattattacctttgCatctagtttgtgatttgtac	8	6	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	18	52608233	52608233	C	A	SNP	CCDC68	ENST00000337363	human	ensembl	69_37n	-1	known	missense	c.199	p.A67S	0.021	NULL	superfamily_Prefoldin	-	no_errors	CCDC68	HGNC	ENSG00000166510	84	0	0	77	11	12.5	-	-	-	A	52608233	C	A	52608233	3	1	269	1	0	0	0	0	1	0	0	0	2867	710	25	4	844	4	CCDC68	18	52608233	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	33497872	52608233	25469015	46	25460										
C19orf25	0	genome.wustl.edu	37	chr19	1474870	1474872	+	In_Frame_Del	DEL	GAC	GAC	-													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	caccaactcggcatgaatgaGacgacggatgaaccgcagcc							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	1474870	1474872	GAC	-	DEL	C19orf25	ENST00000588871	human	ensembl	69_37n	-1	putative	in_frame_del	c.427_425	p.R142in_frame_del	0.004:0.005:0.004	NULL	NULL	-	no_errors	C19orf25	HGNC	ENSG00000119559	59	0	0	22	9	29.03	-	-	-	-	1474872	GAC	-	1474870	7	5	269	1	0	1	0	1	0	0	0	0	1933	957	33	0		0	C19orf25	19	1474870	In_Frame_Del	DEL	GAC	TCGA-AC-A5XU-01A-11D-A28B-09		1474870	57654113	47	25461										
TIMM44	0	genome.wustl.edu	37	chr19	7992107	7992107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ggtgctggaggccgagatgtCcaggagccgccaggccgcgt	18	12	0	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	7992107	7992107	C	T	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	missense	c.1324	p.D442N	1.000	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	83	0	0	64	17	20.99	-	-	-	T	7992107	C	T	7992107	3	4	269	1	0	0	0	0	1	0	0	0	16007	855	30	2	38	2	TIMM44	19	7992107	Missense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	6517237	7992107	51136876	48	25462										
KCNK6	0	genome.wustl.edu	37	chr19	38810781	38810781	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cgccctggacgccttcgtggAgcgagtgctggcggccggac	17	14	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	38810781	38810781	A	G	SNP	KCNK6	ENST00000263372	human	ensembl	69_37n	1	known	missense	c.191	p.E64G	0.975	pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl_TWIK1	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TWIK2,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TWIK1	-	no_errors	KCNK6	HGNC	ENSG00000099337	44	0	0	52	11	17.46	-	-	-	G	38810781	A	G	38810781	3	3	269	1	0	0	0	0	1	0	0	0	8124	304	11	5	193	5	KCNK6	19	38810781	Missense_Mutation	SNP	A	TCGA-AC-A5XU-01A-11D-A28B-09	30818674	38810781	20318202	49	25463										
RYR1	0	genome.wustl.edu	37	chr19	38980895	38980895	+	Frame_Shift_Del	DEL	C	C	-													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gcaagacgtacccgcgagttCcgctccccaccccaggaaca							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	38980895	38980895	C	-	DEL	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	frame_shift_del	c.5994	p.R1999fs	1.000	superfamily_MG_RAP_rcpt_1	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	26	0	0	15	3	16.67	-	-	-	-	38980895	C	-	38980895	7	5	269	1	0	1	0	1	0	0	0	0	13854	854	30	0	6136	0	RYR1	19	38980895	Frame_Shift_Del	DEL	C	TCGA-AC-A5XU-01A-11D-A28B-09	170114	38980895	20148088	50	25464										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41798224	41798224	+	Frame_Shift_Del	DEL	C	C	-													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	atgggcattgctttccgaatCcagaaggaagccttgggggg							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	41798224	41798224	C	-	DEL	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	frame_shift_del	c.1074	p.Q359fs	0.998	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	78	0	0	17	2	10.53	-	-	-	-	41798224	C	-	41798224	7	5	269	1	0	1	0	1	0	0	0	0	7325	845	30	0	1104	0	HNRNPUL1	19	41798224	Frame_Shift_Del	DEL	C	TCGA-AC-A5XU-01A-11D-A28B-09	2817329	41798224	17330759	51	25465										
MEGF8	0	genome.wustl.edu	37	chr19	42875524	42875524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gccagtgtaatggccacgcgGacacatgtaacgagcaggat	13	10	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	42875524	42875524	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.7159	p.D2387N	1.000	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	59	0	0	24	5	17.24	-	-	-	A	42875524	G	A	42875524	3	1	269	1	0	0	0	0	1	0	0	0	9534	1174	41	2	7116	2	MEGF8	19	42875524	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	1077300	42875524	16253459	52	25466										
SPHK2	0	genome.wustl.edu	37	chr19	49133694	49133694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	cttcctccatccgacagcccGcgggaggactcagactccag	10	17	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	19	49133694	49133694	G	A	SNP	SPHK2	ENST00000443164	human	ensembl	69_37n	1	known	missense	c.2108	p.R703H	0.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176	83	0	0	65	12	15.58	-	-	-	A	49133694	G	A	49133694	3	1	269	1	0	0	0	0	1	0	0	0	15138	1102	38	1		1	SPHK2	19	49133694	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	6258170	49133694	9995289	53	25467										
MYBL2	0	genome.wustl.edu	37	chr20	42333911	42333911	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	ggagctggagagcccctcgcTgacatccaccccagtgtgca	12	15	0	2			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	20	42333911	42333911	T	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.1418	p.L473Q	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	87	0	0	57	17	22.97	-	-	-	A	42333911	T	A	42333911	3	1	269	1	0	0	0	0	1	0	0	0	10082	1580	55	5	1452	5	MYBL2	20	42333911	Missense_Mutation	SNP	T	TCGA-AC-A5XU-01A-11D-A28B-09		42333911	20691609	54	25468										
TUBB1	0	genome.wustl.edu	37	chr20	57598974	57598974	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gagtacccggaccggatcatGaattccttcagcgtcatgcc	10	13	3	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	20	57598974	57598974	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	missense	c.492	p.M164I	0.997	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	76	0	0	70	8	10.26	-	-	-	A	57598974	G	A	57598974	3	1	269	1	0	0	0	0	1	0	0	0	16850	1290	45	2	506	2	TUBB1	20	57598974	Missense_Mutation	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	15265063	57598974	5426546	55	25469										
CHRNA4	0	genome.wustl.edu	37	chr20	61978071	61978071	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gcacggcagccccaggccacGcaggctcccggtcccttcct	11	20	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	20	61978071	61978071	G	A	SNP	CHRNA4	ENST00000463705	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CHRNA4	HGNC	ENSG00000101204	44	0	0	36	11	23.4	-	-	-	A	61978071	G	A	61978071	1	1	269	0	1	0	0	0	0	0	0	0	3414	1102	38	1		1	CHRNA4	20	61978071	RNA	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	4379097	61978071	1047449	56	25470										
WDR4	0	genome.wustl.edu	37	chr21	44270219	44270219	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gcatgcccgtcgggcccaggCgggggactccggcgccgctg	18	16	0	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	21	44270219	44270219	C	T	SNP	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	silent	c.1179	p.P393	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	43	0	0	27	7	20.59	-	-	-	T	44270219	C	T	44270219	2	4	269	1	0	0	0	0	0	0	0	1	17390	755	27	1		1	WDR4	21	44270219	Silent	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		44270219	3859676	57	25471										
CSF2RB	0	genome.wustl.edu	37	chr22	37325587	37325587	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	aggtggtctacaagcggcttCaggactcttgggaggtagga	16	7	3	0			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	22	37325587	37325587	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	69_37n	1	known	nonsense	c.535	p.Q179*	0.332	pirsf_IL3_rcpt_beta,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368	114	0	0	35	13	27.08	-	-	-	T	37325587	C	T	37325587	4	4	269	1	0	0	0	0	0	1	0	0	3967	827	29	2	549	2	CSF2RB	22	37325587	Nonsense_Mutation	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09		37325587	13978979	58	25472										
FRMPD4	0	genome.wustl.edu	37	chrX	12632959	12632959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtaatgattaatgatgaaccGgtcagcgctgcacccagaga	11	9	1	4			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	X	12632959	12632959	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	silent	c.381	p.P127	0.288	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	62	0	0	35	15	30	-	-	-	A	12632959	G	A	12632959	2	1	269	1	0	0	0	0	0	0	0	1	6108	1103	39	1		1	FRMPD4	23	12632959	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09		12632959	142637601	59	25473										
MED12	0	genome.wustl.edu	37	chrX	70350046	70350047	+	In_Frame_Ins	INS	-	-	ATA													0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	aaaacccccagcggcagcgcINSataaagcgcattctccaggt							TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	X	70350046	70350047	-	ATA	INS	MED12	ENST00000333646	human	ensembl	69_37n	1	known	in_frame_ins	c.4029_4030	p.1344in_frame_insI	0.995:1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	51	0	0	46	18	28.12	-	-	-	ATA	70350047	-	ATA	70350046	7	5	269	1	0	1	1	0	0	0	0	0	9499	697	25	0	4139	0	MED12	23	70350046	In_Frame_Ins	INS	-	TCGA-AC-A5XU-01A-11D-A28B-09	57717087	70350046	84920514	60	25474										
TREX2	0	genome.wustl.edu	37	chrX	152710883	152710883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gtctcggcccggggtgcctcGgacatggtgatgttcccacg	15	13	1	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	X	152710883	152710883	G	A	SNP	TREX2	ENST00000334497	human	ensembl	69_37n	-1	known	silent	c.135	p.S45	0.011	superfamily_RNaseH-like_dom	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	TREX2	HGNC	ENSG00000183479	88	0	0	53	6	10.17	-	-	-	A	152710883	G	A	152710883	2	1	269	1	0	0	0	0	0	0	0	1	16573	1103	39	1		1	TREX2	23	152710883	Silent	SNP	G	TCGA-AC-A5XU-01A-11D-A28B-09	82360837	152710883	2559677	61	25475										
MECP2	0	genome.wustl.edu	37	chrX	153296805	153296805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	8	0.15516540792361	2.00956937799043	4.77272727272727	1.49147727272727	0.637186343068696	1	0	gggctccctctcccagttacCgtgaagtcaaaatcattagg	9	12	3	1			TCGA-AC-A5XU-01A-11D-A28B-09	TCGA-AC-A5XU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb1dbae-1f3c-4986-8493-e49981155689	f3058a74-3da8-4367-b662-dc1cf4e4392b	X	153296805	153296805	C	T	SNP	MECP2	ENST00000303391	human	ensembl	69_37n	-1	known	silent	c.474	p.T158	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057	80	0	0	41	13	24.07	-	-	-	T	153296805	C	T	153296805	2	4	269	1	0	0	0	0	0	0	0	1	9494	639	23	1		1	MECP2	23	153296805	Silent	SNP	C	TCGA-AC-A5XU-01A-11D-A28B-09	585922	153296805	1973755	62	25476										
NBPF1	0	genome.wustl.edu	37	chr1	16901044	16901044	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	atgagccaatgagagttgagTcgactttgtcttcctcaaat	9	8	2	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	1	16901044	16901044	T	G	SNP	NBPF1	ENST00000287968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	237	0	0	144	20	12.05	-	-	-	G	16901044	T	G	16901044	1	3	270	0	1	0	0	0	0	0	0	0	10264	1667	58	5		5	NBPF1	1	16901044	RNA	SNP	T	TCGA-AC-A62X-01A-11D-A29N-09		16901044	232349577	1	25477										
MAEL	0	genome.wustl.edu	37	chr1	166959030	166959030	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	atggctcgagaatggagggcCgctcagggaaaggaccctgg	17	9	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	1	166959030	166959030	C	T	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	silent	c.189	p.A63	0.934	pfam_HMG_superfamily,superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	42	0	0	52	9	14.75	-	-	-	T	166959030	C	T	166959030	2	4	270	1	0	0	0	0	0	0	0	1	9221	639	23	1		1	MAEL	1	166959030	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	150057986	166959030	82291591	2	25478										
CACNA1E	0	genome.wustl.edu	37	chr1	181689359	181689359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	taggtattgggcttccctacGgaatttggtggtctccttga	12	8	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	1	181689359	181689359	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1769	p.R590Q	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	53	0	0	88	35	28.23	-	-	-	A	181689359	G	A	181689359	3	1	270	1	0	0	0	0	1	0	0	0	2567	1116	39	1	1823	1	CACNA1E	1	181689359	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	14730329	181689359	67561262	3	25479										
PLEKHA6	0	genome.wustl.edu	37	chr1	204199663	204199663	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tcggtcaatctgctcctccaCgctcatcttgaccttcccct	5	18	4	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	1	204199663	204199663	C	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.2461	p.V821L	0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	58	0	0	56	51	47.66	-	-	-	A	204199663	C	A	204199663	3	1	270	1	0	0	0	0	1	0	0	0	12134	536	19	3	705	3	PLEKHA6	1	204199663	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	22510304	204199663	45050958	4	25480										
ACOXL	0	genome.wustl.edu	37	chr2	111559229	111559229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cccctttctattcttgccagGtctgcatggtgtggacaatg	10	11	3	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	2	111559229	111559229	G	A	SNP	ACOXL	ENST00000439055	human	ensembl	69_37n	1	known	missense	c.548	p.G183D	0.930	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	111	0	0	86	30	25.86	-	-	-	A	111559229	G	A	111559229	3	1	270	1	0	0	0	0	1	0	0	0	161	1275	44	4	574	4	ACOXL	2	111559229	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		111559229	131640144	5	25481										
AMMECR1L	0	genome.wustl.edu	37	chr2	128622763	128622763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ctctgcgtaactgattgtcaCcttctcacttcggtacctgt	7	13	3	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	2	128622763	128622763	C	T	SNP	AMMECR1L	ENST00000272647	human	ensembl	69_37n	-1	known	missense	c.838	p.V280M	1.000	pfam_AMMECR1_domain,pfscan_AMMECR1_domain	pfam_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1L	HGNC	ENSG00000144233	36	0	0	38	8	17.39	-	-	-	T	128622763	C	T	128622763	3	4	270	1	0	0	0	0	1	0	0	0	579	507	18	4	98	4	AMMECR1L	2	128622763	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	17063534	128622763	114576610	6	25482										
BAP1	0	genome.wustl.edu	37	chr3	52440864	52440865	+	Frame_Shift_Ins	INS	-	-	A													0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cctgcagtggcgaggccgatINSacgctccatgatgacccgcc							TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	3	52440864	52440865	-	A	INS	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	frame_shift_ins	c.640_639	p.I213fs	1.000:0.846	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	57	0	0	7	30	81.08	-	-	-	A	52440865	-	A	52440864	7	5	270	1	0	1	1	0	0	0	0	0	1315	1406	49	0	1589	0	BAP1	3	52440864	Frame_Shift_Ins	INS	-	TCGA-AC-A62X-01A-11D-A29N-09		52440864	145581566	7	25483										
FOXL2	0	genome.wustl.edu	37	chr3	138665358	138665358	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtgagcctcttctccgcgctCtcgcggatcgccatggcgat	12	15	3	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	3	138665358	138665358	C	A	SNP	FOXL2	ENST00000330315	human	ensembl	69_37n	-1	known	missense	c.207	p.E69D	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL2	HGNC	ENSG00000183770	27	0	0	63	10	13.7	-	-	-	A	138665358	C	A	138665358	3	1	270	1	0	0	0	0	1	0	0	0	6065	912	32	2	927	2	FOXL2	3	138665358	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	86224494	138665358	59357072	8	25484										
MCF2L2	0	genome.wustl.edu	37	chr3	182947467	182947467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tatatacctgttgtgaaattCgtaaagttctctaatattcc	5	7	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	3	182947467	182947467	C	T	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.2032	p.E678K	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	19	0	0	28	5	15.15	-	-	-	T	182947467	C	T	182947467	3	4	270	1	0	0	0	0	1	0	0	0	9451	893	31	1	1368	1	MCF2L2	3	182947467	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	44282109	182947467	15074963	9	25485										
ABLIM2	0	genome.wustl.edu	37	chr4	8034384	8034384	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtggtggttacctcggtcggCgttggcgagagcaactgagg	18	8	0	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	4	8034384	8034384	C	T	SNP	ABLIM2	ENST00000361737	human	ensembl	69_37n	-1	known	silent	c.1071	p.T357	0.929	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	60	0	0	21	33	61.11	-	-	-	T	8034384	C	T	8034384	2	4	270	1	0	0	0	0	0	0	0	1	95	755	27	1		1	ABLIM2	4	8034384	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		8034384	183119892	10	25486										
SEL1L3	0	genome.wustl.edu	37	chr4	25750062	25750062	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	acagttcacccacgtggctcCgggttattagttactgtggg	12	10	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	4	25750062	25750062	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	silent	c.3384	p.P1128	0.001	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	73	0	0	31	40	56.34	-	-	-	T	25750062	C	T	25750062	2	4	270	1	0	0	0	0	0	0	0	1	14100	639	23	1		1	SEL1L3	4	25750062	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	17715678	25750062	165404214	11	25487										
PALLD	0	genome.wustl.edu	37	chr4	169611772	169611772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	aggaactgcaaaacacagccGtggcggaaggccaggtggtg	16	9	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	4	169611772	169611772	G	A	SNP	PALLD	ENST00000261509	human	ensembl	69_37n	1	known	missense	c.1354	p.V452M	0.692	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	59	0	0	31	16	34.04	-	-	-	A	169611772	G	A	169611772	3	1	270	1	0	0	0	0	1	0	0	0	11480	1145	40	1	1376	1	PALLD	4	169611772	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	143861710	169611772	21542504	12	25488										
ODZ3	0	genome.wustl.edu	37	chr4	183720880	183720880	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tggctgtggttcgccacggtCaagtcgctgatcggcaaggg	16	10	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	4	183720880	183720880	C	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	silent	c.7476	p.V2492	0.997	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	26	0	0	16	6	27.27	-	-	-	A	183720880	C	A	183720880	2	1	270	1	0	0	0	0	0	0	0	1	10909	813	29	2		2	ODZ3	4	183720880	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	14109108	183720880	7433396	13	25489										
ITGA1	0	genome.wustl.edu	37	chr5	52227951	52227951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cccggtaaaatatgaagttgGactacagttttacaggtagg	11	6	0	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	5	52227951	52227951	G	C	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.2846	p.G949A	0.863	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	59	0	0	38	20	34.48	-	-	-	C	52227951	G	C	52227951	3	2	270	1	0	0	0	0	1	0	0	0	7926	1174	41	2	2932	2	ITGA1	5	52227951	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		52227951	128687309	14	25490										
MSX2	0	genome.wustl.edu	37	chr5	174156477	174156477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	catcagctcgcccctgcaggCagcgtccatatatggagcat	10	14	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	5	174156477	174156477	C	T	SNP	MSX2	ENST00000239243	human	ensembl	69_37n	1	known	missense	c.695	p.A232V	0.996	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149	65	0	0	26	22	45.83	-	-	-	T	174156477	C	T	174156477	3	4	270	1	0	0	0	0	1	0	0	0	9968	710	25	4	701	4	MSX2	5	174156477	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	121928526	174156477	6758783	15	25491										
OR2Y1	0	genome.wustl.edu	37	chr5	180166345	180166345	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	aggaggtgggacccacaagtCccaaaagcctttctgcgccc	11	14	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	5	180166345	180166345	C	T	SNP	OR2Y1	ENST00000307832	human	ensembl	69_37n	-1	known	silent	c.714	p.G238	0.039	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339	25	0	0	11	6	35.29	-	-	-	T	180166345	C	T	180166345	2	4	270	1	0	0	0	0	0	0	0	1	11108	842	30	2		2	OR2Y1	5	180166345	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	6009868	180166345	748915	16	25492										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032052	26032052	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tggaagcgaagatcggtcttGaagtcttgggcgatttctcg	14	7	3	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	6	26032052	26032052	G	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.237	p.F79L	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	79	0	0	133	46	25.7	-	-	-	T	26032052	G	T	26032052	3	4	270	1	0	0	0	0	1	0	0	0	7207	1281	45	2	177	2	HIST1H3B	6	26032052	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		26032052	145083015	17	25493										
TNXB	0	genome.wustl.edu	37	chr6	32020477	32020477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cacagcggacactgggcccaCgcgctgcccctcgtggaggc	14	17	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	6	32020477	32020477	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.9079	p.V3027M	0.725	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	57	0	0	80	20	20	-	-	-	T	32020477	C	T	32020477	3	4	270	1	0	0	0	0	1	0	0	0	16441	536	19	1	5710	1	TNXB	6	32020477	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	5988425	32020477	139094590	18	25494										
TEAD3	0	genome.wustl.edu	37	chr6	35442832	35442832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gagggcaccctagtctttgaCgagcttgtagacatggtgct	13	9	1	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	6	35442832	35442832	C	T	SNP	TEAD3	ENST00000402886	human	ensembl	69_37n	-1	novel	missense	c.1117	p.V373I	1.000	pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866	53	0	0	95	16	14.41	-	-	-	T	35442832	C	T	35442832	3	4	270	1	0	0	0	0	1	0	0	0	15835	536	19	1	14	1	TEAD3	6	35442832	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	3422355	35442832	135672235	19	25495										
OGFRL1	0	genome.wustl.edu	37	chr6	72011241	72011241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	taagcagagtgctctagagtAttttgtttatacaattagag	9	4	1	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	6	72011241	72011241	A	G	SNP	OGFRL1	ENST00000370435	human	ensembl	69_37n	1	known	missense	c.845	p.Y282C	1.000	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900	58	0	0	84	14	14.29	-	-	-	G	72011241	A	G	72011241	3	3	270	1	0	0	0	0	1	0	0	0	10917	449	16	5	871	5	OGFRL1	6	72011241	Missense_Mutation	SNP	A	TCGA-AC-A62X-01A-11D-A29N-09	36568409	72011241	99103826	20	25496										
MLLT4	0	genome.wustl.edu	37	chr6	168363149	168363149	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ggaggcggcagcagcagttaGaagagatgcgcaagcgggaa	18	7	0	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	6	168363149	168363149	G	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.4849	p.E1617Q	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	79	0	0	93	13	12.26	-	-	-	C	168363149	G	C	168363149	3	2	270	1	0	0	0	0	1	0	0	0	9700	943	33	2	5079	2	MLLT4	6	168363149	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	96351908	168363149	2751918	21	25497										
GIGYF1	0	genome.wustl.edu	37	chr7	100284299	100284299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ggcggagcgccagcggtcgcCgtctcgccggggccctgctc	17	17	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	7	100284299	100284299	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.667	p.G223S	0.994	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	49	0	0	36	10	21.74	-	-	-	T	100284299	C	T	100284299	3	4	270	1	0	0	0	0	1	0	0	0	6429	652	23	1	2512	1	GIGYF1	7	100284299	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		100284299	58854364	22	25498										
CPSF1	0	genome.wustl.edu	37	chr8	145626185	145626185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gggcccgcacgtcgatgatgTagctgggcaggaagctggac	17	10	0	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	8	145626185	145626185	T	C	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.566	p.Y189C	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	56	0	0	43	38	46.91	-	-	-	C	145626185	T	C	145626185	3	2	270	1	0	0	0	0	1	0	0	0	3854	1638	57	5	3893	5	CPSF1	8	145626185	Missense_Mutation	SNP	T	TCGA-AC-A62X-01A-11D-A29N-09		145626185	737837	23	25499										
BNC2	0	genome.wustl.edu	37	chr9	16431421	16431421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cagctaattctgactatcacGctctcttcaagagaatctcc	5	13	5	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	9	16431421	16431421	G	A	SNP	BNC2	ENST00000411752	human	ensembl	69_37n	-1	known	silent	c.945	p.S315	0.000	NULL	pfscan_Znf_C2H2	-	no_start_codon	BNC2	HGNC	ENSG00000173068	51	0	0	92	25	21.37	-	-	-	A	16431421	G	A	16431421	2	1	270	1	0	0	0	0	0	0	0	1	1480	1102	38	1		1	BNC2	9	16431421	Silent	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		16431421	124782010	24	25500										
FAM75A6	0	genome.wustl.edu	37	chr9	43628235	43628235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gaggatccggggaagctaacGgggagagaatgggagcagca	19	6	0	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	9	43628235	43628235	G	A	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.452	p.P151L	0.000	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	9	0	0	10	6	37.5	-	-	-	A	43628235	G	A	43628235	3	1	270	1	0	0	0	0	1	0	0	0	5667	1116	39	1	3583	1	FAM75A6	9	43628235	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	27196814	43628235	97585196	25	25501										
CARD9	0	genome.wustl.edu	37	chr9	139258462	139258462	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tgttttctaacactaatacaAtgcatgcatgtattgtgtgt	7	6	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	9	139258462	139258462	A	G	SNP	CARD9	ENST00000460290	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CARD9	HGNC	ENSG00000187796	20	0	0	22	5	18.52	-	-	-	G	139258462	A	G	139258462	1	3	270	0	1	0	0	0	0	0	0	0	2677	116	4	5		5	CARD9	9	139258462	RNA	SNP	A	TCGA-AC-A62X-01A-11D-A29N-09	95630227	139258462	1954969	26	25502										
MAN1B1	0	genome.wustl.edu	37	chr9	139998223	139998223	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ggtcggtggtgttacattcaCactgttgcaggtgtgcaggt	15	7	1	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	9	139998223	139998223	C	T	SNP	MAN1B1	ENST00000540391	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.521	-	-	-	no_errors	MAN1B1	HGNC	ENSG00000177239	151	1	0.66	158	26	14.13	-	-	-	T	139998223	C	T	139998223	1	4	270	0	1	0	0	0	0	0	0	0	9283	493	17	4		4	MAN1B1	9	139998223	RNA	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	739761	139998223	1215208	27	25503										
ADARB2	0	genome.wustl.edu	37	chr10	1246063	1246063	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	acgaagtgggacaggagcgcGccctgcagccccaggacgtt	15	13	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	10	1246063	1246063	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	silent	c.1707	p.G569	0.002	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	63	0	0	70	30	30	-	-	-	A	1246063	G	A	1246063	2	1	270	1	0	0	0	0	0	0	0	1	283	1074	38	1		1	ADARB2	10	1246063	Silent	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		1246063	134288684	28	25504										
OR52A5	0	genome.wustl.edu	37	chr11	5153189	5153189	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tccttctggggcagctgaaaGacagtgataaaaatttggac	11	7	1	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	11	5153189	5153189	G	T	SNP	OR52A5	ENST00000307388	human	ensembl	69_37n	-1	known	silent	c.684	p.V228	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	26	0	0	23	6	20.69	-	-	-	T	5153189	G	T	5153189	2	4	270	1	0	0	0	0	0	0	0	1	11183	929	33	2		2	OR52A5	11	5153189	Silent	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		5153189	129853327	29	25505										
LUZP2	0	genome.wustl.edu	37	chr11	24759771	24759771	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ttttctactaaaatagagaaGaaatgaagtctcttcaggag	8	5	3	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	11	24759771	24759771	G	T	SNP	LUZP2	ENST00000336930	human	ensembl	69_37n	1	known	nonsense	c.256	p.E86*	1.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	60	0	0	38	16	29.63	-	-	-	T	24759771	G	T	24759771	4	4	270	1	0	0	0	0	0	1	0	0	9153	943	33	2	270	2	LUZP2	11	24759771	Nonsense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	19606582	24759771	110246745	30	25506										
MUS81	0	genome.wustl.edu	37	chr11	65633368	65633368	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtgtgggcgtctacagaggtGagggcaagagacggaacctg	18	7	1	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	11	65633368	65633368	G	A	SNP	MUS81	ENST00000529742	human	ensembl	69_37n	1	putative	silent	c.191	p.*64	1.000	NULL	NULL	-	no_start_codon	MUS81	HGNC	ENSG00000172732	66	0	0	46	16	25.4	-	-	-	A	65633368	G	A	65633368	2	1	270	1	0	0	0	0	0	0	0	1	10060	1305	45	2		2	MUS81	11	65633368	Silent	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	40873597	65633368	69373148	31	25507										
CNIH2	0	genome.wustl.edu	37	chr11	66045953	66045953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gttcaccttcgccgcgttctGctacatgctcaccctggtgc	9	16	3	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	11	66045953	66045953	G	A	SNP	CNIH2	ENST00000311445	human	ensembl	69_37n	1	known	missense	c.26	p.C9Y	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH2	HGNC	ENSG00000174871	8	0	0	18	11	37.93	-	-	-	A	66045953	G	A	66045953	3	1	270	1	0	0	0	0	1	0	0	0	3633	1319	46	4	28	4	CNIH2	11	66045953	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	412585	66045953	68960563	32	25508										
NLRX1	0	genome.wustl.edu	37	chr11	119043620	119043620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ttgttcccagggcctttataCgccaccacggaagctcggta	10	13	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	11	119043620	119043620	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	missense	c.151	p.R51C	0.061	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	32	0	0	26	9	25.71	-	-	-	T	119043620	C	T	119043620	3	4	270	1	0	0	0	0	1	0	0	0	10557	536	19	1	161	1	NLRX1	11	119043620	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	52997667	119043620	15962896	33	25509										
OAS2	0	genome.wustl.edu	37	chr12	113425098	113425098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	tctctttcgaggtgctggccGccttcaacgctctgagtaag	11	12	3	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	12	113425098	113425098	G	A	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.433	p.A145T	0.871	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	23	0	0	21	5	19.23	-	-	-	A	113425098	G	A	113425098	3	1	270	1	0	0	0	0	1	0	0	0	10873	1087	38	1	439	1	OAS2	12	113425098	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		113425098	20426797	34	25510										
HHIPL1	0	genome.wustl.edu	37	chr14	100118715	100118715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	aactgaccaggagctctgggCgctggagggcaaccttgcca	14	12	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	14	100118715	100118715	C	T	SNP	HHIPL1	ENST00000330710	human	ensembl	69_37n	1	known	missense	c.410	p.A137V	0.903	pfam_Folate_rcpt-like	pfam_Srcr_rcpt,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	HHIPL1	HGNC	ENSG00000182218	26	0	0	18	16	47.06	-	-	-	T	100118715	C	T	100118715	3	4	270	1	0	0	0	0	1	0	0	0	7144	768	27	1	416	1	HHIPL1	14	100118715	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		100118715	7230825	35	25511										
LTK	0	genome.wustl.edu	37	chr15	41797455	41797455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtggcagccctgggctatgtCctgggccagttgcagcaggt	16	11	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	15	41797455	41797455	C	T	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.1876	p.D626N	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	37	0	0	34	13	27.66	-	-	-	T	41797455	C	T	41797455	3	4	270	1	0	0	0	0	1	0	0	0	9146	855	30	2	742	2	LTK	15	41797455	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		41797455	60733937	36	25512										
CLCN7	0	genome.wustl.edu	37	chr16	1511617	1511617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cgcccacctcatacttgaggGacaggagcttctcgttgtgt	11	12	2	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	16	1511617	1511617	G	C	SNP	CLCN7	ENST00000382745	human	ensembl	69_37n	-1	known	missense	c.272	p.S91C	1.000	prints_Cl_channel-7	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	54	0	0	55	22	28.57	-	-	-	C	1511617	G	C	1511617	3	2	270	1	0	0	0	0	1	0	0	0	3498	1174	41	2	2237	2	CLCN7	16	1511617	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		1511617	88843136	37	25513										
TXNDC11	0	genome.wustl.edu	37	chr16	11782284	11782284	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gggactatagagaacgctgaAgttttgaataaaagactcta	10	5	1	4			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	16	11782284	11782284	A	C	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.1999	p.F667V	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	29	0	0	42	8	16	-	-	-	C	11782284	A	C	11782284	3	2	270	1	0	0	0	0	1	0	0	0	16889	72	3	5	974	5	TXNDC11	16	11782284	Missense_Mutation	SNP	A	TCGA-AC-A62X-01A-11D-A29N-09	10270667	11782284	78572469	38	25514										
FBXL19	0	genome.wustl.edu	37	chr16	30939090	30939090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	caggtgaggggcctggccgcCgtagggccgacaacggcgag	19	12	0	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	16	30939090	30939090	C	T	SNP	FBXL19	ENST00000380310	human	ensembl	69_37n	1	known	missense	c.493	p.R165C	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	FBXL19	HGNC	ENSG00000099364	127	0	0	144	35	19.55	-	-	-	T	30939090	C	T	30939090	3	4	270	1	0	0	0	0	1	0	0	0	5761	652	23	1	511	1	FBXL19	16	30939090	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	19156806	30939090	59415663	39	25515										
SALL1	0	genome.wustl.edu	37	chr16	51173053	51173053	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	aaactgtgcaaataaatggtCtctctttggtatgacttcta	7	7	3	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	16	51173053	51173053	C	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.3080	p.R1027K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	35	0	0	11	10	47.62	-	-	-	T	51173053	C	T	51173053	3	4	270	1	0	0	0	0	1	0	0	0	13896	913	32	2	902	2	SALL1	16	51173053	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	20233963	51173053	39181700	40	25516										
TP53	0	genome.wustl.edu	37	chr17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gcaaatttccttccactcggAtaagatgctgaggaggggcc	12	10	0	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	17	7578265	7578265	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.584	p.I195T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0	12	31	72.09	-	-	-	G	7578265	A	G	7578265	3	3	270	1	0	0	0	0	1	0	0	0	16477	333	12	5	710	5	TP53	17	7578265	Missense_Mutation	SNP	A	TCGA-AC-A62X-01A-11D-A29N-09		7578265	73616945	41	25517										
SEZ6	0	genome.wustl.edu	37	chr17	27296881	27296881	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	atgacttggccccgcagcagGaaagactggttggccagggg	16	10	0	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	17	27296881	27296881	G	T	SNP	SEZ6	ENST00000317338	human	ensembl	69_37n	-1	known	missense	c.948	p.F316L	0.998	superfamily_CUB	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015	101	0	0	15	61	80.26	-	-	-	T	27296881	G	T	27296881	3	4	270	1	0	0	0	0	1	0	0	0	14230	1165	41	2	2105	2	SEZ6	17	27296881	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	19718616	27296881	53898329	42	25518										
TMEM100	0	genome.wustl.edu	37	chr17	53798216	53798216	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ttgaagctgtaagccaccgcGgtgaccacgatgccggcgat	13	12	0	2			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	17	53798216	53798216	G	A	SNP	TMEM100	ENST00000424486	human	ensembl	69_37n	-1	known	silent	c.216	p.T72	0.181	NULL	NULL	-	no_errors	TMEM100	HGNC	ENSG00000166292	54	0	0	6	45	88.24	-	-	-	A	53798216	G	A	53798216	2	1	270	1	0	0	0	0	0	0	0	1	16110	1103	39	1		1	TMEM100	17	53798216	Silent	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	26501335	53798216	27396994	43	25519										
KIAA1328	0	genome.wustl.edu	37	chr18	34647216	34647216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtcatagacttgctgcagatCgtgttcatgacagccatcct	9	11	2	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	18	34647216	34647216	C	T	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	missense	c.940	p.R314C	0.290	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	62	0	0	41	14	25.45	-	-	-	T	34647216	C	T	34647216	3	4	270	1	0	0	0	0	1	0	0	0	8277	884	31	1	966	1	KIAA1328	18	34647216	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		34647216	43430032	44	25520										
PLEKHF1	0	genome.wustl.edu	37	chr19	30165101	30165101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	cggccgcctccgctacggagCgccaggaatggattagccac	13	15	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	19	30165101	30165101	C	T	SNP	PLEKHF1	ENST00000436066	human	ensembl	69_37n	1	known	missense	c.355	p.R119C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF1	HGNC	ENSG00000166289	54	0	0	55	17	23.61	-	-	-	T	30165101	C	T	30165101	3	4	270	1	0	0	0	0	1	0	0	0	12140	768	27	1	357	1	PLEKHF1	19	30165101	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		30165101	28963882	45	25521										
GGN	0	genome.wustl.edu	37	chr19	38876632	38876632	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ccccgggcgcatgggctcgcCattggtgggtgctgggaaga	18	11	0	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	19	38876632	38876632	C	A	SNP	GGN	ENST00000334928	human	ensembl	69_37n	-1	known	missense	c.1270	p.G424C	0.855	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168	18	0	0	7	20	74.07	-	-	-	A	38876632	C	A	38876632	3	1	270	1	0	0	0	0	1	0	0	0	6410	594	21	4	696	4	GGN	19	38876632	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	8711531	38876632	20252351	46	25522										
NTN5	0	genome.wustl.edu	37	chr19	49164994	49164996	+	In_Frame_Del	DEL	CTC	CTC	-													0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ccgcggcagcctccggcgcgCtcctcctgctgcagccgctt							TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	19	49164994	49164996	CTC	-	DEL	NTN5	ENST00000270235	human	ensembl	69_37n	-1	known	in_frame_del	c.1410_1408	p.E470in_frame_del	0.961:1.000:1.000	superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Netrin_domain	-	no_errors	NTN5	HGNC	ENSG00000142233	9	0	0	2	4	66.67	-	-	-	-	49164996	CTC	-	49164994	7	5	270	1	0	1	0	1	0	0	0	0	10776	796	28	0	63	0	NTN5	19	49164994	In_Frame_Del	DEL	CTC	TCGA-AC-A62X-01A-11D-A29N-09	10288362	49164994	9963989	47	25523										
CGB1	0	genome.wustl.edu	37	chr19	49538955	49538955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ggaagcgggggtcatcacagGtcaaggggtggtccttggga	19	7	3	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	19	49538955	49538955	G	T	SNP	CGB1	ENST00000301407	human	ensembl	69_37n	-1	known	missense	c.380	p.T127N	0.977	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB1	HGNC	ENSG00000267631	83	0	0	77	24	23.76	-	-	-	T	49538955	G	T	49538955	3	4	270	1	0	0	0	0	1	0	0	0	3326	1261	44	4	91	4	CGB1	19	49538955	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	373961	49538955	9590028	48	25524										
LILRA5	0	genome.wustl.edu	37	chr19	54823368	54823368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gatggtcacagagttcccccGgctgatcacagagcctggct	12	13	2	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	19	54823368	54823368	G	A	SNP	LILRA5	ENST00000301219	human	ensembl	69_37n	-1	known	missense	c.175	p.R59W	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116	45	0	0	32	12	27.27	-	-	-	A	54823368	G	A	54823368	3	1	270	1	0	0	0	0	1	0	0	0	8843	1115	39	1	826	1	LILRA5	19	54823368	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	5284413	54823368	4305615	49	25525										
TGM6	0	genome.wustl.edu	37	chr20	2413157	2413157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gtgcctaccctggagcctcaGgagagggcctcagtccagtt	13	13	2	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	20	2413157	2413157	G	A	SNP	TGM6	ENST00000381423	human	ensembl	69_37n	1	known	missense	c.1855	p.G619R	1.000	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948	42	0	0	12	11	47.83	-	-	-	A	2413157	G	A	2413157	3	1	270	1	0	0	0	0	1	0	0	0	15929	991	35	4	2039	4	TGM6	20	2413157	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		2413157	60612363	50	25526										
MAVS	0	genome.wustl.edu	37	chr20	3846631	3846631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gggcaaccctgggccacctgCggacccggatggcggcccca	15	17	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	20	3846631	3846631	C	T	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	missense	c.1460	p.A487V	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	34	0	0	17	7	29.17	-	-	-	T	3846631	C	T	3846631	3	4	270	1	0	0	0	0	1	0	0	0	9409	768	27	1	1482	1	MAVS	20	3846631	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	1433474	3846631	59178889	51	25527										
DIP2A	0	genome.wustl.edu	37	chr21	47983837	47983837	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	gacccttgggagactcacacCtgggagaggtgagcaggggc	17	10	1	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	21	47983837	47983837	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	silent	c.4159	p.L1387	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	34	0	0	30	19	38.78	-	-	-	T	47983837	C	T	47983837	2	4	270	1	0	0	0	0	0	0	0	1	4563	680	24	4		4	DIP2A	21	47983837	Silent	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		47983837	146058	52	25528										
FBLN1	0	genome.wustl.edu	37	chr22	45958895	45958895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ccaccaacatccaagcgcccGcggtggttttccgcatgggc	11	16	0	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	22	45958895	45958895	G	A	SNP	FBLN1	ENST00000262722	human	ensembl	69_37n	1	known	missense	c.1801	p.A601T	1.000	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942	55	0	0	44	23	34.33	-	-	-	A	45958895	G	A	45958895	3	1	270	1	0	0	0	0	1	0	0	0	5744	1087	38	1	1867	1	FBLN1	22	45958895	Missense_Mutation	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09		45958895	5345671	53	25529										
DMD	0	genome.wustl.edu	37	chrX	31279129	31279129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	ccagcaagttgtttgagtctCgtggctaaaacacaaaacat	8	9	1	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	X	31279129	31279129	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9229	p.E3077K	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pirsf_Dystrophin/utrophin,pfscan_WW_Rsp5_WWP	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	38	0	0	25	17	40.48	-	-	-	T	31279129	C	T	31279129	3	4	270	1	0	0	0	0	1	0	0	0	4616	893	31	1	1986	1	DMD	23	31279129	Missense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09		31279129	123991431	54	25530										
RBM3	0	genome.wustl.edu	37	chrX	48434060	48434060	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	agccatgaacggagaggtggGgcctcctatctgcagaggga	16	9	1	3			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	X	48434060	48434060	G	A	SNP	RBM3	ENST00000485213	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RBM3	HGNC	ENSG00000102317	66	0	0	79	23	22.55	-	-	-	A	48434060	G	A	48434060	1	1	270	0	1	0	0	0	0	0	0	0	13212	1247	43	4		4	RBM3	23	48434060	RNA	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	17154931	48434060	106836500	55	25531										
HTR2C	0	genome.wustl.edu	37	chrX	114141231	114141231	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	aacacgacgtgcgtgctcaaCgacccaaatttcgttcttat	7	12	2	0			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	X	114141231	114141231	C	T	SNP	HTR2C	ENST00000371950	human	ensembl	69_37n	1	known	nonsense	c.535	p.R179*	0.946	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HTR2C	HGNC	ENSG00000147246	103	0	0	125	79	38.54	-	-	-	T	114141231	C	T	114141231	4	4	270	1	0	0	0	0	0	1	0	0	7497	535	19	1	644	1	HTR2C	23	114141231	Nonsense_Mutation	SNP	C	TCGA-AC-A62X-01A-11D-A29N-09	65707171	114141231	41129329	56	25532										
MOSPD1	0	genome.wustl.edu	37	chrX	134033520	134033520	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	3	0.994628167771038	0.706906232453678	3.0632603406326	0.510543390105434	1	1	0	acagtctcaaatctattttgGacttttcttagattcagtta	5	7	4	1			TCGA-AC-A62X-01A-11D-A29N-09	TCGA-AC-A62X-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c16a9047-5cff-4096-902f-de7ceca1c349	495a1629-20ff-41e2-b82f-c7d17da58369	X	134033520	134033520	G	T	SNP	MOSPD1	ENST00000462060	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.726	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928	64	0	0	77	13	14.44	-	-	-	T	134033520	G	T	134033520	1	4	270	0	1	0	0	0	0	0	0	0	9787	1189	41	2		2	MOSPD1	23	134033520	RNA	SNP	G	TCGA-AC-A62X-01A-11D-A29N-09	19892289	134033520	21237040	57	25533										
KLHL17	0	genome.wustl.edu	37	chr1	899384	899384	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cgctatgtgcgagtggccacGcttggtgggtgatggggcct	18	9	0	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	899384	899384	G	A	SNP	KLHL17	ENST00000338591	human	ensembl	69_37n	1	known	silent	c.1440	p.T480	0.992	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961	46	0	0	21	6	22.22	-	-	-	A	899384	G	A	899384	2	1	271	1	0	0	0	0	0	0	0	1	8425	1074	38	1		1	KLHL17	1	899384	Silent	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		899384	248351237	1	25534										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980074	12980074	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gagagttatgacacccagggTgctctctgctgggggagatt	15	8	1	3			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	12980074	12980074	T	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1266	p.G422	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	25	0	0	4	4	50	-	-	-	A	12980074	T	A	12980074	2	1	271	1	0	0	0	0	0	0	0	1	12519	1683	59	5		5	PRAMEF7	1	12980074	Silent	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	12080690	12980074	236270547	2	25535										
INADL	0	genome.wustl.edu	37	chr1	62550250	62550250	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cattgtccctggacaggaaaTgattatagaaatatccaagg	9	7	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	62550250	62550250	T	A	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.4307	p.M1436K	1.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	71	0	0	30	7	18.92	-	-	-	A	62550250	T	A	62550250	3	1	271	1	0	0	0	0	1	0	0	0	7785	1464	51	5	4433	5	INADL	1	62550250	Missense_Mutation	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	49570176	62550250	186700371	3	25536										
USP33	0	genome.wustl.edu	37	chr1	78163138	78163138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gaaaattccatgtttcttcaGaaatctggccagaatctgct	7	9	4	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	78163138	78163138	G	C	SNP	USP33	ENST00000357428	human	ensembl	69_37n	-1	known	missense	c.2693	p.S898C	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP33	HGNC	ENSG00000077254	52	0	0	33	23	41.07	-	-	-	C	78163138	G	C	78163138	3	2	271	1	0	0	0	0	1	0	0	0	17161	942	33	2	139	2	USP33	1	78163138	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	15612888	78163138	171087483	4	25537										
GPR61	0	genome.wustl.edu	37	chr1	110086413	110086413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agacaccccggcaacgctccGaatctctcagcagccgctcc	8	19	2	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	110086413	110086413	G	A	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	1	known	missense	c.769	p.E257K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	62	0	0	44	8	15.38	-	-	-	A	110086413	G	A	110086413	3	1	271	1	0	0	0	0	1	0	0	0	6752	1059	37	1	771	1	GPR61	1	110086413	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	31923275	110086413	139164208	5	25538										
DENND4B	0	genome.wustl.edu	37	chr1	153916630	153916630	+	Frame_Shift_Del	DEL	C	C	-													0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cactgagttccaaggggtggCccccagcagaagcctggatg							TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	153916630	153916630	C	-	DEL	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	frame_shift_del	c.221	p.G74fs	1.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	67	0	0	61	11	15.28	-	-	-	-	153916630	C	-	153916630	7	5	271	1	0	1	0	1	0	0	0	0	4470	739	26	0	4377	0	DENND4B	1	153916630	Frame_Shift_Del	DEL	C	TCGA-AC-A62Y-01A-11D-A29N-09	43830217	153916630	95333991	6	25539										
DENND4B	0	genome.wustl.edu	37	chr1	153916698	153916698	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cccagtgccctagcgatgacTgccacatctgtgatgggctc	11	14	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	1	153916698	153916698	T	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	silent	c.153	p.A51	0.984	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	90	0	0	62	8	11.43	-	-	-	C	153916698	T	C	153916698	2	2	271	1	0	0	0	0	0	0	0	1	4470	1567	55	5		5	DENND4B	1	153916698	Silent	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	68	153916698	95333923	7	25540										
ANKRD36B	0	genome.wustl.edu	37	chr2	98127653	98127653	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	attctttttctttcgaatgaTtcagttcattgaccaacatt	4	8	4	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	2	98127653	98127653	T	G	SNP	ANKRD36B	ENST00000497329	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	8	0	0	5	6	54.55	-	-	-	G	98127653	T	G	98127653	1	3	271	0	1	0	0	0	0	0	0	0	665	1493	52	5		5	ANKRD36B	2	98127653	RNA	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09		98127653	145071720	8	25541										
AFF3	0	genome.wustl.edu	37	chr2	100209831	100209831	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcgattttgacccagagagaCctgatctcatcactgtcctt	7	12	2	4			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	2	100209831	100209831	C	A	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.2367	p.R789S	0.867	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	87	0	0	81	13	13.83	-	-	-	A	100209831	C	A	100209831	3	1	271	1	0	0	0	0	1	0	0	0	358	506	18	4	1432	4	AFF3	2	100209831	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	2082178	100209831	142989542	9	25542										
HDLBP	0	genome.wustl.edu	37	chr2	242179047	242179047	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	atgatctcctgaatgcgtttCttggctgcctccacacagtc	8	13	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	2	242179047	242179047	C	T	SNP	HDLBP	ENST00000373292	human	ensembl	69_37n	-1	novel	missense	c.2005	p.E669K	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDLBP	HGNC	ENSG00000115677	31	0	0	16	13	44.83	-	-	-	T	242179047	C	T	242179047	3	4	271	1	0	0	0	0	1	0	0	0	7076	912	32	2	1266	2	HDLBP	2	242179047	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	141969216	242179047	1020326	10	25543										
VGLL4	0	genome.wustl.edu	37	chr3	11712738	11712738	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcaaaagaacatttttaccaTggtgcagacctggatgtctc	8	9	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	3	11712738	11712738	T	C	SNP	VGLL4	ENST00000404339	human	ensembl	69_37n	-1	known	missense	c.77	p.H26R	0.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560	43	0	0	33	6	15.38	-	-	-	C	11712738	T	C	11712738	3	2	271	1	0	0	0	0	1	0	0	0	17258	1479	51	5		5	VGLL4	3	11712738	Missense_Mutation	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09		11712738	186309692	11	25544										
SLC6A6	0	genome.wustl.edu	37	chr3	14487331	14487331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tctgaagggggcatcacctgCtgggaaaagatctgcccctt	12	11	3	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	3	14487331	14487331	C	T	SNP	SLC6A6	ENST00000360861	human	ensembl	69_37n	1	known	silent	c.336	p.C112	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389	88	0	0	53	12	18.46	-	-	-	T	14487331	C	T	14487331	2	4	271	1	0	0	0	0	0	0	0	1	14777	805	28	4		4	SLC6A6	3	14487331	Silent	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	2774593	14487331	183535099	12	25545										
NCKIPSD	0	genome.wustl.edu	37	chr3	48716506	48716506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	acctggcaggtgcaggttgaGagccagaagcaggttcacgc	15	10	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	3	48716506	48716506	G	C	SNP	NCKIPSD	ENST00000294129	human	ensembl	69_37n	-1	known	missense	c.1681	p.L561V	1.000	pfam_DUF2013	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672	63	0	0	34	14	29.17	-	-	-	C	48716506	G	C	48716506	3	2	271	1	0	0	0	0	1	0	0	0	10297	942	33	2	503	2	NCKIPSD	3	48716506	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	34229175	48716506	149305924	13	25546										
CACNA1D	0	genome.wustl.edu	37	chr3	53765165	53765165	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcaaccagatagccaacagtGacaacaaggtatgtattcta	7	9	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	3	53765165	53765165	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2458	p.D820N	1.000	prints_LVDCC_a1dsu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	70	0	0	34	14	29.17	-	-	-	A	53765165	G	A	53765165	3	1	271	1	0	0	0	0	1	0	0	0	2566	1290	45	2	2636	2	CACNA1D	3	53765165	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	5048659	53765165	144257265	14	25547										
CRMP1	0	genome.wustl.edu	37	chr4	5827283	5827283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ggggctggtgtttagaaggcGaagatttggctgaaggagcg	19	4	0	3			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	4	5827283	5827283	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.1907	p.S636L	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	73	0	0	39	9	18.75	-	-	-	A	5827283	G	A	5827283	3	1	271	1	0	0	0	0	1	0	0	0	3920	1059	37	1	161	1	CRMP1	4	5827283	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		5827283	185326993	15	25548										
GSX2	0	genome.wustl.edu	37	chr4	54967839	54967839	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ggagctggagagagaattctCttccaacatgtacctgtctc	10	10	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	4	54967839	54967839	C	G	SNP	GSX2	ENST00000326902	human	ensembl	69_37n	1	known	missense	c.665	p.S222C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	GSX2	HGNC	ENSG00000180613	51	0	0	17	13	43.33	-	-	-	G	54967839	C	G	54967839	3	3	271	1	0	0	0	0	1	0	0	0	6901	913	32	2	671	2	GSX2	4	54967839	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	49140556	54967839	136186437	16	25549										
KIAA0922	0	genome.wustl.edu	37	chr4	154547320	154547320	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agacagtgtttcacaaaatgAttttccttctgaagctccca	6	10	2	3			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	4	154547320	154547320	A	G	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.4067	p.D1356G	0.253	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	91	0	0	44	11	20	-	-	-	G	154547320	A	G	154547320	3	3	271	1	0	0	0	0	1	0	0	0	8253	333	12	5	4185	5	KIAA0922	4	154547320	Missense_Mutation	SNP	A	TCGA-AC-A62Y-01A-11D-A29N-09	99579481	154547320	36606956	17	25550										
SH3RF1	0	genome.wustl.edu	37	chr4	170017808	170017808	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agttcaagttctgcctcactCtgaggaggataggaaaccac	10	10	4	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	4	170017808	170017808	C	T	SNP	SH3RF1	ENST00000284637	human	ensembl	69_37n	-1	known	silent	c.2529	p.Q843	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447	79	0	0	30	13	30.23	-	-	-	T	170017808	C	T	170017808	2	4	271	1	0	0	0	0	0	0	0	1	14347	912	32	2		2	SH3RF1	4	170017808	Silent	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	15470488	170017808	21136468	18	25551										
SEMA5A	0	genome.wustl.edu	37	chr5	9066748	9066748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gacacgggttggtgttgcaaGactggtactcctggggagaa	16	7	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	5	9066748	9066748	G	C	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.2084	p.S695C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	83	0	0	58	20	25.64	-	-	-	C	9066748	G	C	9066748	3	2	271	1	0	0	0	0	1	0	0	0	14125	942	33	2	1168	2	SEMA5A	5	9066748	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		9066748	171848512	19	25552										
MEGF10	0	genome.wustl.edu	37	chr5	126705643	126705643	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tccatggtcgctgtattgctCcaaacacctgtcagtgtgag	10	11	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	5	126705643	126705643	C	G	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	missense	c.361	p.P121A	1.000	smart_EGF-like	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	91	0	0	73	40	35.4	-	-	-	G	126705643	C	G	126705643	3	3	271	1	0	0	0	0	1	0	0	0	9531	855	30	2	375	2	MEGF10	5	126705643	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	117638895	126705643	54209617	20	25553										
EPB41L2	0	genome.wustl.edu	37	chr6	131216142	131216142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tttaatgtagaagttactgcGtttataggaaatttttaaga	8	2	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	6	131216142	131216142	G	A	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.1354	p.R452C	1.000	pirsf_Band_41_protein,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	69	0	0	42	8	16	-	-	-	A	131216142	G	A	131216142	3	1	271	1	0	0	0	0	1	0	0	0	5190	1145	40	1	1707	1	EPB41L2	6	131216142	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		131216142	39898925	21	25554										
KIF25	0	genome.wustl.edu	37	chr6	168434703	168434703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	atccctagagtggctgaggaGctcttcaggtactgccgatg	13	10	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	6	168434703	168434703	G	T	SNP	KIF25	ENST00000354419	human	ensembl	69_37n	1	known	missense	c.309	p.E103D	0.936	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337	77	0	0	43	11	20.37	-	-	-	T	168434703	G	T	168434703	3	4	271	1	0	0	0	0	1	0	0	0	8345	962	34	4	319	4	KIF25	6	168434703	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	37218561	168434703	2680364	22	25555										
MUC17	0	genome.wustl.edu	37	chr7	100701312	100701312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcagaggcctcaggtaatgaCgacatcattttaaggcatgg	11	8	3	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	7	100701312	100701312	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.13469	p.T4490M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	44	0	0	21	10	32.26	-	-	-	T	100701312	C	T	100701312	3	4	271	1	0	0	0	0	1	0	0	0	10046	536	19	1	13519	1	MUC17	7	100701312	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09		100701312	58437351	23	25556										
MTUS1	0	genome.wustl.edu	37	chr8	17612530	17612530	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcctgaagaacatgcacactGatttccaatatctgaaacaa	5	10	1	4			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	8	17612530	17612530	G	A	SNP	MTUS1	ENST00000262102	human	ensembl	69_37n	-1	known	nonsense	c.787	p.Q263*	0.138	NULL	superfamily_Ferritin/RR-like	-	no_errors	MTUS1	HGNC	ENSG00000129422	93	0	0	51	11	17.74	-	-	-	A	17612530	G	A	17612530	4	1	271	1	0	0	0	0	0	1	0	0	10037	1299	45	2	3400	2	MTUS1	8	17612530	Nonsense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		17612530	128751492	24	25557										
PRKDC	0	genome.wustl.edu	37	chr8	48811108	48811108	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ggcataggtgatcaatggcaTcacaacactgttgaattgta	10	7	2	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	8	48811108	48811108	T	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.3386	p.D1129V	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	21	0	0	20	5	20	-	-	-	A	48811108	T	A	48811108	3	1	271	1	0	0	0	0	1	0	0	0	12602	1435	50	5	9231	5	PRKDC	8	48811108	Missense_Mutation	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	31198578	48811108	97552914	25	25558										
XKR4	0	genome.wustl.edu	37	chr8	56436523	56436523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gcgaccgcgatcagaaattcGcagagcgggatgggtgtgta	16	8	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	8	56436523	56436523	G	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1690	p.A564T	0.098	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	67	0	0	48	11	18.64	-	-	-	A	56436523	G	A	56436523	3	1	271	1	0	0	0	0	1	0	0	0	17530	1087	38	1	1700	1	XKR4	8	56436523	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	7625415	56436523	89927499	26	25559										
SLCO5A1	0	genome.wustl.edu	37	chr8	70594539	70594539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	caaccacaattaacgttgcaGcttcctgtcagattcctatg	6	12	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	8	70594539	70594539	G	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.1662	p.S554R	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	39	0	0	29	6	17.14	-	-	-	T	70594539	G	T	70594539	3	4	271	1	0	0	0	0	1	0	0	0	14820	962	34	4	900	4	SLCO5A1	8	70594539	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	14158016	70594539	75769483	27	25560										
PHF2	0	genome.wustl.edu	37	chr9	96439907	96439907	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ggcatggcgaccgccaagcaGaggcttgggaaaattttgaa	14	8	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	9	96439907	96439907	G	C	SNP	PHF2	ENST00000359246	human	ensembl	69_37n	1	known	missense	c.3240	p.Q1080H	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724	56	0	0	24	24	50	-	-	-	C	96439907	G	C	96439907	3	2	271	1	0	0	0	0	1	0	0	0	11904	933	33	2	3326	2	PHF2	9	96439907	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		96439907	44773524	28	25561										
OR13C9	0	genome.wustl.edu	37	chr9	107380401	107380402	+	Frame_Shift_Ins	INS	-	-	A													0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tacattatgaagattagcacINSaaaaaagagtaactcaagcc							TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	9	107380401	107380402	-	A	INS	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	frame_shift_ins	c.85_84	p.V28fs	0.245:0.267	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	50	0	0	42	19	31.15	-	-	-	A	107380402	-	A	107380401	7	5	271	1	0	1	1	0	0	0	0	0	11012	478	17	0	874	0	OR13C9	9	107380401	Frame_Shift_Ins	INS	-	TCGA-AC-A62Y-01A-11D-A29N-09	10940494	107380401	33833030	29	25562										
MPP7	0	genome.wustl.edu	37	chr10	28412995	28412995	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ttcctcaggccttttatcctCcactggtatcccgttgactt	6	14	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	10	28412995	28412995	C	A	SNP	MPP7	ENST00000337532	human	ensembl	69_37n	-1	known	nonsense	c.580	p.E194*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP7	HGNC	ENSG00000150054	33	0	0	11	7	38.89	-	-	-	A	28412995	C	A	28412995	4	1	271	1	0	0	0	0	0	1	0	0	9811	864	30	2	1190	2	MPP7	10	28412995	Nonsense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09		28412995	107121752	30	25563										
PTEN	0	genome.wustl.edu	37	chr10	89692864	89692865	+	Frame_Shift_Ins	INS	-	-	A													0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	aatggctaagtgaagatgacINSaatcatgttgcagcaattca							TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	10	89692864	89692865	-	A	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.348_349	p.N116fs	1.000:1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	80	0	0	29	38	56.72	-	-	-	A	89692865	-	A	89692864	7	5	271	1	0	1	1	0	0	0	0	0	12818	477	17	0	366	0	PTEN	10	89692864	Frame_Shift_Ins	INS	-	TCGA-AC-A62Y-01A-11D-A29N-09	61279869	89692864	45841883	31	25564										
FAM160A2	0	genome.wustl.edu	37	chr11	6245042	6245042	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gcaggaagaactcgagcaatGaaggctcctgggccacacaa	12	11	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	11	6245042	6245042	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.575	p.S192L	0.998	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	25	0	0	11	5	31.25	-	-	-	A	6245042	G	A	6245042	3	1	271	1	0	0	0	0	1	0	0	0	5509	1294	45	2	2425	2	FAM160A2	11	6245042	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		6245042	128761474	32	25565										
PRDM4	0	genome.wustl.edu	37	chr12	108154313	108154313	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cggcttggggccaaatatcaGagaaaggagcgctcgggtgg	17	8	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	12	108154313	108154313	G	A	SNP	PRDM4	ENST00000547268	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRDM4	HGNC	ENSG00000110851	39	0	0	31	7	18.42	-	-	-	A	108154313	G	A	108154313	1	1	271	0	1	0	0	0	0	0	0	0	12540	957	33	2		2	PRDM4	12	108154313	RNA	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		108154313	25697582	33	25566										
OR4M1	0	genome.wustl.edu	37	chr14	20248532	20248532	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gaatttgttctcactggcctAtcccagactcgggaggtcca	10	12	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	14	20248532	20248532	A	G	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	silent	c.51	p.L17	0.050	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	58	0	0	41	5	10.87	-	-	-	G	20248532	A	G	20248532	2	3	271	1	0	0	0	0	0	0	0	1	11148	436	16	5		5	OR4M1	14	20248532	Silent	SNP	A	TCGA-AC-A62Y-01A-11D-A29N-09		20248532	87101008	34	25567										
NEK9	0	genome.wustl.edu	37	chr14	75585575	75585575	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gaattaagtttctttgctagGccataatctccaagttttat	6	7	2	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	14	75585575	75585575	G	T	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	silent	c.588	p.G196	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	37	0	0	35	9	20.45	-	-	-	T	75585575	G	T	75585575	2	4	271	1	0	0	0	0	0	0	0	1	10403	1190	42	4		4	NEK9	14	75585575	Silent	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	55337043	75585575	31763965	35	25568										
KIAA0430	0	genome.wustl.edu	37	chr16	15702369	15702369	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gatcttttcttctccacattCcaatacctttgaaaacacac	2	13	3	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	16	15702369	15702369	C	G	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.3961	p.E1321Q	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	37	0	0	39	11	22	-	-	-	G	15702369	C	G	15702369	3	3	271	1	0	0	0	0	1	0	0	0	8229	864	30	2	1295	2	KIAA0430	16	15702369	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09		15702369	74652384	36	25569										
NDE1	0	genome.wustl.edu	37	chr16	15818436	15818436	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	aacactccaccgcgatctgcCtgcgggggatctcagcgcag	12	15	2	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	16	15818436	15818436	C	G	SNP	NDE1	ENST00000571896	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDE1	HGNC	ENSG00000072864	36	0	0	27	6	18.18	-	-	-	G	15818436	C	G	15818436	1	3	271	0	1	0	0	0	0	0	0	0	10315	696	24	4		4	NDE1	16	15818436	RNA	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	116067	15818436	74536317	37	25570										
USP31	0	genome.wustl.edu	37	chr16	23083474	23083474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gctggctggcttgctgcccgGgagccggctcacccagtgtt	15	14	1	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	16	23083474	23083474	G	A	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.2380	p.P794S	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	34	0	0	47	8	14.55	-	-	-	A	23083474	G	A	23083474	3	1	271	1	0	0	0	0	1	0	0	0	17159	1232	43	4	1686	4	USP31	16	23083474	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	7265038	23083474	67271279	38	25571										
INO80E	0	genome.wustl.edu	37	chr16	30012782	30012782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ccttctgactacctggccctGcagctgcccgagcccagtcc	9	19	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	16	30012782	30012782	G	A	SNP	INO80E	ENST00000562291	human	ensembl	69_37n	1	putative	missense	c.118	p.A40T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	INO80E	HGNC	ENSG00000169592	95	0	0	120	22	15.49	-	-	-	A	30012782	G	A	30012782	3	1	271	1	0	0	0	0	1	0	0	0	7804	1306	46	4	466	4	INO80E	16	30012782	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	6929308	30012782	60341971	39	25572										
CCDC144A	0	genome.wustl.edu	37	chr17	16593988	16593988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	acagagctgcccggtcgggcGacgtccctggggtggagcac	17	13	0	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	16593988	16593988	G	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.274	p.D92N	0.002	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	42	0	0	29	7	19.44	-	-	-	A	16593988	G	A	16593988	3	1	271	1	0	0	0	0	1	0	0	0	2802	1058	37	1	276	1	CCDC144A	17	16593988	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		16593988	64601222	40	25573										
LIG3	0	genome.wustl.edu	37	chr17	33325668	33325668	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	actggctgaaagtgaagaaaGactatttgaacgagggggcc	14	6	0	5			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	33325668	33325668	G	A	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.2035	p.D679N	1.000	pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	64	0	0	34	11	24.44	-	-	-	A	33325668	G	A	33325668	3	1	271	1	0	0	0	0	1	0	0	0	8837	942	33	2	2085	2	LIG3	17	33325668	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	16731680	33325668	47869542	41	25574										
STARD3	0	genome.wustl.edu	37	chr17	37819130	37819130	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	atttgcctttcacctgcgacAgcgcatcagcgagctggggg	13	12	2	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	37819130	37819130	A	G	SNP	STARD3	ENST00000336308	human	ensembl	69_37n	1	known	missense	c.1307	p.Q436R	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	pfam_MENTAL,pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	48	0	0	33	12	26.67	-	-	-	G	37819130	A	G	37819130	3	3	271	1	0	0	0	0	1	0	0	0	15348	188	7	5	1374	5	STARD3	17	37819130	Missense_Mutation	SNP	A	TCGA-AC-A62Y-01A-11D-A29N-09	4493462	37819130	43376080	42	25575										
JUP	0	genome.wustl.edu	37	chr17	39925390	39925390	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	caccagctggggcgagcccaTcagggcccgccgcgacgcct	14	18	1	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	39925390	39925390	T	A	SNP	JUP	ENST00000310706	human	ensembl	69_37n	-1	known	missense	c.538	p.M180L	1.000	superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	JUP	HGNC	ENSG00000173801	75	0	0	27	13	32.5	-	-	-	A	39925390	T	A	39925390	3	1	271	1	0	0	0	0	1	0	0	0	8026	1435	50	5	1743	5	JUP	17	39925390	Missense_Mutation	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	2106260	39925390	41269820	43	25576										
EFTUD2	0	genome.wustl.edu	37	chr17	42928679	42928679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gcacaacatcctgtttggcaAgttccagcaacataggatca	8	11	1	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	42928679	42928679	A	C	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2882	p.L961R	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	22	0	0	4	3	42.86	-	-	-	C	42928679	A	C	42928679	3	2	271	1	0	0	0	0	1	0	0	0	4996	72	3	5	40	5	EFTUD2	17	42928679	Missense_Mutation	SNP	A	TCGA-AC-A62Y-01A-11D-A29N-09	3003289	42928679	38266531	44	25577										
EPX	0	genome.wustl.edu	37	chr17	56281653	56281653	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tgagcagaatttccttgtctCgaattatatgtgacaatacc	7	8	1	3			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	56281653	56281653	C	G	SNP	EPX	ENST00000225371	human	ensembl	69_37n	1	known	missense	c.2017	p.R673G	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	69	0	0	36	17	32.08	-	-	-	G	56281653	C	G	56281653	3	3	271	1	0	0	0	0	1	0	0	0	5237	876	31	3	2063	3	EPX	17	56281653	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	13352974	56281653	24913557	45	25578										
TEX2	0	genome.wustl.edu	37	chr17	62232305	62232305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ttcctcatcgctgtccgccaGacagaatgcccggggcctgc	11	16	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	62232305	62232305	G	C	SNP	TEX2	ENST00000258991	human	ensembl	69_37n	-1	known	missense	c.2848	p.L950V	1.000	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478	27	0	0	10	7	41.18	-	-	-	C	62232305	G	C	62232305	3	2	271	1	0	0	0	0	1	0	0	0	15876	933	33	2	572	2	TEX2	17	62232305	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	5950652	62232305	18962905	46	25579										
NOL11	0	genome.wustl.edu	37	chr17	65722667	65722667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gttaaatcactgctgctcaaGgctgttgtatctggtaacgc	10	9	3	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	17	65722667	65722667	G	A	SNP	NOL11	ENST00000253247	human	ensembl	69_37n	1	known	silent	c.756	p.K252	0.014	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935	102	0	0	41	13	24.07	-	-	-	A	65722667	G	A	65722667	2	1	271	1	0	0	0	0	0	0	0	1	10593	991	35	4		4	NOL11	17	65722667	Silent	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	3490362	65722667	15472543	47	25580										
ATP8B3	0	genome.wustl.edu	37	chr19	1784825	1784825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	aggcccacctcaccttggcaCgtagctccttgagggctggg	13	14	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	1784825	1784825	C	T	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.3683	p.R1228H	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	61	0	0	39	6	13.33	-	-	-	T	1784825	C	T	1784825	3	4	271	1	0	0	0	0	1	0	0	0	1200	536	19	1	257	1	ATP8B3	19	1784825	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09		1784825	57344158	48	25581										
ZNF700	0	genome.wustl.edu	37	chr19	12036032	12036032	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ctgtcgcctgcgctatgcccTgctgtagtcacaggagctgt	12	13	1	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	12036032	12036032	T	G	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.7	p.C3G	0.018	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	51	0	0	60	8	11.76	-	-	-	G	12036032	T	G	12036032	3	3	271	1	0	0	0	0	1	0	0	0	18200	1580	55	5	9	5	ZNF700	19	12036032	Missense_Mutation	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	10251207	12036032	47092951	49	25582										
ZNF429	0	genome.wustl.edu	37	chr19	21719636	21719636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agaaaccctacaaatgtaaaGaatgtggcaaagcctttagc	8	8	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	21719636	21719636	G	C	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.781	p.E261Q	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	15	0	0	16	6	27.27	-	-	-	C	21719636	G	C	21719636	3	2	271	1	0	0	0	0	1	0	0	0	17998	943	33	2	795	2	ZNF429	19	21719636	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	9683604	21719636	37409347	50	25583										
FAM98C	0	genome.wustl.edu	37	chr19	38895664	38895664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agggagccggcatggtccaaGaactggaccttaccctccaa	11	13	0	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	38895664	38895664	G	C	SNP	FAM98C	ENST00000252530	human	ensembl	69_37n	1	known	missense	c.466	p.E156Q	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	61	0	0	35	14	28.57	-	-	-	C	38895664	G	C	38895664	3	2	271	1	0	0	0	0	1	0	0	0	5704	943	33	2	480	2	FAM98C	19	38895664	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	17176028	38895664	20233319	51	25584										
CALM3	0	genome.wustl.edu	37	chr19	47112431	47112431	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	aggccccccgggcagctggcGatgcccgttctcttgatctc	12	16	2	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	47112431	47112431	G	A	SNP	CALM3	ENST00000477244	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	CALM3	HGNC	ENSG00000160014	87	0	0	45	33	42.31	-	-	-	A	47112431	G	A	47112431	1	1	271	0	1	0	0	0	0	0	0	0	2611	1073	37	1		1	CALM3	19	47112431	RNA	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	8216767	47112431	12016552	52	25585										
SIGLEC10	0	genome.wustl.edu	37	chr19	51920051	51920051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ctgagaagtgggaggtcgttGgtttggttccttgggaggag	19	4	0	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	51920051	51920051	G	A	SNP	SIGLEC10	ENST00000339313	human	ensembl	69_37n	-1	known	missense	c.575	p.P192L	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC10	HGNC	ENSG00000142512	129	0	0	124	31	20	-	-	-	A	51920051	G	A	51920051	3	1	271	1	0	0	0	0	1	0	0	0	14395	1348	47	4	1554	4	SIGLEC10	19	51920051	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	4807620	51920051	7208932	53	25586										
KIR2DL1	0	genome.wustl.edu	37	chr19	55294960	55294960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gctgcggtaatggaccaagaGtctgcaggaaacagaacagc	13	9	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	19	55294960	55294960	G	T	SNP	KIR2DL1	ENST00000336077	human	ensembl	69_37n	1	known	missense	c.840	p.E280D	0.030	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498	80	0	0	53	17	24.29	-	-	-	T	55294960	G	T	55294960	3	4	271	1	0	0	0	0	1	0	0	0	8369	1020	36	4	866	4	KIR2DL1	19	55294960	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	3374909	55294960	3834023	54	25587										
DUSP15	0	genome.wustl.edu	37	chr20	30451741	30451741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gcagttccccccattaaggcGgcagcagtggatgaagttga	13	10	0	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	20	30451741	30451741	G	A	SNP	DUSP15	ENST00000278979	human	ensembl	69_37n	-1	known	missense	c.223	p.R75C	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,superfamily_SMAD_FHA_domain,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP15	HGNC	ENSG00000149599	78	0	0	58	14	19.44	-	-	-	A	30451741	G	A	30451741	3	1	271	1	0	0	0	0	1	0	0	0	4850	1116	39	1	487	1	DUSP15	20	30451741	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		30451741	32573779	55	25588										
TMPRSS15	0	genome.wustl.edu	37	chr21	19698785	19698785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	atagccagtagtaaagtttgCtttaaaccctcctcttgcca	6	11	1	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	21	19698785	19698785	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.1885	p.A629T	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	72	0	0	66	13	16.46	-	-	-	T	19698785	C	T	19698785	3	4	271	1	0	0	0	0	1	0	0	0	16341	797	28	4	1214	4	TMPRSS15	21	19698785	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09		19698785	28431110	56	25589										
PIGP	0	genome.wustl.edu	37	chr21	38437924	38437924	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ttggctgcaagaaagaacatTtggtttacttcactaataga	8	6	1	3			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	21	38437924	38437924	T	C	SNP	PIGP	ENST00000464265	human	ensembl	69_37n	-1	known	silent	c.435	p.Q145	0.752	pfam_PIG-P,pirsf_PIG-P_GPI19	pfam_PIG-P,pirsf_PIG-P_GPI19	-	no_errors	PIGP	HGNC	ENSG00000185808	50	0	0	44	12	21.43	-	-	-	C	38437924	T	C	38437924	2	2	271	1	0	0	0	0	0	0	0	1	11969	1838	64	5		5	PIGP	21	38437924	Silent	SNP	T	TCGA-AC-A62Y-01A-11D-A29N-09	18739139	38437924	9691971	57	25590										
PMM1	0	genome.wustl.edu	37	chr22	41985728	41985728	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	tcttcagggtcctacctggcGagccggcgtgagggtcccgt	15	13	2	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	22	41985728	41985728	G	C	SNP	PMM1	ENST00000216259	human	ensembl	69_37n	-1	known	missense	c.82	p.R28G	1.000	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM1	HGNC	ENSG00000100417	88	0	0	23	13	36.11	-	-	-	C	41985728	G	C	41985728	3	2	271	1	0	0	0	0	1	0	0	0	12210	1058	37	3	738	3	PMM1	22	41985728	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		41985728	9318838	58	25591										
CSF2RA	0	genome.wustl.edu	37	chrX	1414387	1414387	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ccctactgacaaccctcagcGtaaccctacggtcccctact	5	19	1	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	1414387	1414387	G	A	SNP	CSF2RA	ENST00000491683	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.040	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223	176	0	0	114	26	18.57	-	-	-	A	1414387	G	A	1414387	1	1	271	0	1	0	0	0	0	0	0	0	3966	1160	40	1		1	CSF2RA	23	1414387	RNA	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09		1414387	153856173	59	25592										
MXRA5	0	genome.wustl.edu	37	chrX	3261811	3261811	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cgggcaggccagcgccactcGcggatggccccaaagcagga	15	15	0	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	3261811	3261811	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	nonsense	c.64	p.R22*	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	47	0	0	39	7	15.22	-	-	-	A	3261811	G	A	3261811	4	1	271	1	0	0	0	0	0	1	0	0	10075	1095	38	1	8446	1	MXRA5	23	3261811	Nonsense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	1847424	3261811	152008749	60	25593										
YY2	0	genome.wustl.edu	37	chrX	21874663	21874663	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	agatcccggcagatattgtgGagctccacgacatcaatgtg	11	10	1	2			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	21874663	21874663	G	C	SNP	YY2	ENST00000429584	human	ensembl	69_37n	1	known	missense	c.61	p.E21Q	0.932	pirsf_TF_Yin_yang	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY2	HGNC	ENSG00000230797	54	0	0	44	14	24.14	-	-	-	C	21874663	G	C	21874663	3	2	271	1	0	0	0	0	1	0	0	0	17606	1175	41	2	63	2	YY2	23	21874663	Missense_Mutation	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	18612852	21874663	133395897	61	25594										
ATRX	0	genome.wustl.edu	37	chrX	76812972	76812972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	cttcttttctgaattagggtCatctaataagtctggctcaa	7	8	6	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	76812972	76812972	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.6649	p.D2217N	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	72	0	0	54	9	14.29	-	-	-	T	76812972	C	T	76812972	3	4	271	1	0	0	0	0	1	0	0	0	1212	826	29	2	853	2	ATRX	23	76812972	Missense_Mutation	SNP	C	TCGA-AC-A62Y-01A-11D-A29N-09	54938309	76812972	78457588	62	25595										
ITM2A	0	genome.wustl.edu	37	chrX	78616565	78616565	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	ctctgacttcttattaccaaGgacactctatctgttgcctc	5	13	4	1			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	78616565	78616565	G	T	SNP	ITM2A	ENST00000469541	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	ITM2A	HGNC	ENSG00000078596	51	0	0	35	16	31.37	-	-	-	T	78616565	G	T	78616565	1	4	271	0	1	0	0	0	0	0	0	0	7966	1015	35	4		4	ITM2A	23	78616565	RNA	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	1803593	78616565	76653995	63	25596										
AFF2	0	genome.wustl.edu	37	chrX	147744010	147744010	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	16	0.000599252734036881	2.83143631436314	4.14603174603175	2.14979423868313	1	1	10	gcgcctgggtctcccctagtGgcttcctctttattagctcc	9	15	2	0			TCGA-AC-A62Y-01A-11D-A29N-09	TCGA-AC-A62Y-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	305901ca-3086-4ca5-81d1-825a0ca5bdf3	5cb6799d-58c1-4424-a38d-a1e6d50ff772	X	147744010	147744010	G	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.762	p.V254	0.993	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	35	0	0	28	5	15.15	-	-	-	A	147744010	G	A	147744010	2	1	271	1	0	0	0	0	0	0	0	1	357	1335	47	4		4	AFF2	23	147744010	Silent	SNP	G	TCGA-AC-A62Y-01A-11D-A29N-09	69127445	147744010	7526550	64	25597										
UBE4B	0	genome.wustl.edu	37	chr1	10186920	10186920	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tccctcgacagtgactacttTaaataccccctcatggtaaa	5	13	1	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	10186920	10186920	T	C	SNP	UBE4B	ENST00000470736	human	ensembl	69_37n	1	novel	missense	c.104	p.L35S	0.999	NULL	pfam_Ub_conjug_fac_E4_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBE4B	HGNC	ENSG00000130939	150	0	0	131	55	29.57	-	-	-	C	10186920	T	C	10186920	3	2	272	1	0	0	0	0	1	0	0	0	16980	1751	61	5	1665	5	UBE4B	1	10186920	Missense_Mutation	SNP	T	TCGA-AN-A03X-01A-21W-A019-09		10186920	239063701	1	25598										
LRRC41	0	genome.wustl.edu	37	chr1	46745910	46745910	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	aagagcacctcgctctgacaGtcagcgagattcatgtcatg	10	11	4	3			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	46745910	46745910	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	silent	c.1974	p.D658	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	93	0	0	43	16	27.12	-	-	-	A	46745910	G	A	46745910	2	1	272	1	0	0	0	0	0	0	0	1	9065	1020	36	4		4	LRRC41	1	46745910	Silent	SNP	G	TCGA-AN-A03X-01A-21W-A019-09	36558990	46745910	202504711	2	25599										
ANKRD34A	0	genome.wustl.edu	37	chr1	145473902	145473902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cggaaatccaactgcagaccGctggaggaggagggcgtggg	18	9	0	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	145473902	145473902	G	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	1	known	missense	c.574	p.A192S	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	179	0	0	104	48	31.58	-	-	-	T	145473902	G	T	145473902	3	4	272	1	0	0	0	0	1	0	0	0	661	1087	38	3	576	3	ANKRD34A	1	145473902	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09	98727992	145473902	103776719	3	25600										
ZNF669	0	genome.wustl.edu	37	chr1	247263686	247263686	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	actcctgggctcaagcaatcCacacgccttggcctcccaaa	7	17	1	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	247263686	247263686	C	G	SNP	ZNF669	ENST00000343381	human	ensembl	69_37n	-1	known	missense	c.1385	p.W462S	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	47	0	0	92	16	14.81	-	-	-	G	247263686	C	G	247263686	3	3	272	1	0	0	0	0	1	0	0	0	18172	595	21	4	13	4	ZNF669	1	247263686	Missense_Mutation	SNP	C	TCGA-AN-A03X-01A-21W-A019-09	101789784	247263686	1986935	4	25601										
ARL6IP6	0	genome.wustl.edu	37	chr2	153616311	153616311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ctatagcatggcgattttgaAtggcatcgtagctgctctta	10	8	1	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	2	153616311	153616311	A	C	SNP	ARL6IP6	ENST00000326446	human	ensembl	69_37n	1	known	missense	c.638	p.N213T	1.000	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	81	0	0	85	45	34.62	-	-	-	C	153616311	A	C	153616311	3	2	272	1	0	0	0	0	1	0	0	0	949	101	4	5	652	5	ARL6IP6	2	153616311	Missense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09		153616311	89583062	5	25602										
CXCR1	0	genome.wustl.edu	37	chr2	219029024	219029024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tttggccgatgaaggcgtagAtgatggggttgaggcagcta	17	5	0	4			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	2	219029024	219029024	A	G	SNP	CXCR1	ENST00000295683	human	ensembl	69_37n	-1	known	missense	c.911	p.I304T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXC/IL8_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR1/IL8RA,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464	159	0	0	217	50	18.73	-	-	-	G	219029024	A	G	219029024	3	3	272	1	0	0	0	0	1	0	0	0	4121	333	12	5	145	5	CXCR1	2	219029024	Missense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09	65412713	219029024	24170349	6	25603										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	146	0	0	185	50	21.28	-	-	-	T	178952085	A	T	178952085	3	4	272	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09		178952085	19070345	7	25604										
MFI2	0	genome.wustl.edu	37	chr3	196743992	196743993	+	Frame_Shift_Del	DEL	CC	CC	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	acctggccttcgttgagcagCcggaagatgaggcccccatc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	3	196743992	196743993	CC	-	DEL	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	frame_shift_del	c.882_881	p.R294fs	0.930:0.933	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	8	0	0	5	9	64.29	-	-	-	-	196743993	CC	-	196743992	7	5	272	1	0	1	0	1	0	0	0	0	9593	726	26	0	1374	0	MFI2	3	196743992	Frame_Shift_Del	DEL	CC	TCGA-AN-A03X-01A-21W-A019-09	17791907	196743992	1278438	8	25605										
FHDC1	0	genome.wustl.edu	37	chr4	153897341	153897342	+	Frame_Shift_Ins	INS	-	-	G													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ggagcagcggctccagcagcINSacccgtccggggagggacgt							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	4	153897341	153897342	-	G	INS	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	frame_shift_ins	c.2898_2899	p.T966fs	0.002:0.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	24	0	0	6	4	40	-	-	-	G	153897342	-	G	153897341	7	5	272	1	0	1	1	0	0	0	0	0	5922	709	25	0	2940	0	FHDC1	4	153897341	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09		153897341	37256935	9	25606										
MAP3K1	0	genome.wustl.edu	37	chr5	56174909	56174909	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ttgtagacaccatcctagtcAaatgtgcagatgccaatagg	9	9	1	2			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	56174909	56174909	A	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.2068	p.K690*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	210	0	0	210	68	24.37	-	-	-	T	56174909	A	T	56174909	4	4	272	1	0	0	0	0	0	1	0	0	9314	131	5	5	2110	5	MAP3K1	5	56174909	Nonsense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09		56174909	124740351	10	25607										
MAP3K1	0	genome.wustl.edu	37	chr5	56180503	56180504	+	Frame_Shift_Del	DEL	AG	AG	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tgaaacaggtgacttatgtcAgaaacacatcttctgagcaa							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	56180503	56180504	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3832_3833	p.R1278fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	62	0	0	51	19	26.76	-	-	-	-	56180504	AG	-	56180503	7	5	272	1	0	1	0	1	0	0	0	0	9314	180	7	0	3894	0	MAP3K1	5	56180503	Frame_Shift_Del	DEL	AG	TCGA-AN-A03X-01A-21W-A019-09	5594	56180503	124734757	11	25608										
EGR1	0	genome.wustl.edu	37	chr5	137803131	137803132	+	Frame_Shift_Ins	INS	-	-	C													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ccaaccggcccagcaagacgINScccccccacgaacgccctta							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	137803131	137803132	-	C	INS	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	frame_shift_ins	c.993_994	p.H333fs	0.502:1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	76	0	0	30	7	18.92	-	-	-	C	137803132	-	C	137803131	7	5	272	1	0	1	1	0	0	0	0	0	5006	1074	38	0	999	0	EGR1	5	137803131	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	81622628	137803131	43112129	12	25609										
PRICKLE4	0	genome.wustl.edu	37	chr6	41752675	41752675	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	agaggactgtttctgcaggaGcgctactgcctggcccttgg	14	11	1	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	41752675	41752675	G	A	SNP	PRICKLE4	ENST00000335515	human	ensembl	69_37n	1	known	silent	c.243	p.E81	0.987	pfam_PET_domain	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593	69	0	0	26	9	25.71	-	-	-	A	41752675	G	A	41752675	2	1	272	1	0	0	0	0	0	0	0	1	12570	962	34	4		4	PRICKLE4	6	41752675	Silent	SNP	G	TCGA-AN-A03X-01A-21W-A019-09		41752675	129362392	13	25610										
BACH2	0	genome.wustl.edu	37	chr6	90660255	90660255	+	Missense_Mutation	SNP	A	A	G													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ctccgcgtaggaataggaagAgcaggagctggaagtcctgg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	90660255	90660255	A	G	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1570	p.S524P	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	100	0	0	56	278	83.23	-	-	-	G	90660255	A	G	90660255	3	3	272	1	0	0	0	0	1	0	0	0	1288	304	11	5	967	5	BACH2	6	90660255	Missense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09	48907580	90660255	80454812	14	25611	229	2								
BACH2	0	genome.wustl.edu	37	chr6	90660256	90660256	+	Silent	SNP	G	G	A													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tccgcgtaggaataggaagaGcaggagctggaagtcctggt							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	90660256	90660256	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	silent	c.1569	p.C523	0.999	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	100	0	0	58	234	80.14	-	-	-	A	90660256	G	A	90660256	2	1	272	1	0	0	0	0	0	0	0	1	1288	963	34	4		4	BACH2	6	90660256	Silent	SNP	G	TCGA-AN-A03X-01A-21W-A019-09	1	90660256	80454811	15	25612	229	2								
PIK3CG	0	genome.wustl.edu	37	chr7	106523570	106523570	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	catttaaagatgaagtcctgAatcactggctcaaagaaaaa	7	7	2	4			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	7	106523570	106523570	A	T	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	missense	c.2722	p.N908Y	0.964	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	361	0	0	335	67	16.67	-	-	-	T	106523570	A	T	106523570	3	4	272	1	0	0	0	0	1	0	0	0	11990	246	9	5	2748	5	PIK3CG	7	106523570	Missense_Mutation	SNP	A	TCGA-AN-A03X-01A-21W-A019-09		106523570	52615093	16	25613										
CEL	0	genome.wustl.edu	37	chr9	135944524	135944524	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	acgacctttgatgtctacacCgagtcctgggcccaggaccc	10	15	1	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	9	135944524	135944524	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	silent	c.1173	p.T391	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	8	0	0	3	3	50	-	-	-	T	135944524	C	T	135944524	2	4	272	1	0	0	0	0	0	0	0	1	3238	639	23	1		1	CEL	9	135944524	Silent	SNP	C	TCGA-AN-A03X-01A-21W-A019-09		135944524	5268907	17	25614										
CNNM2	0	genome.wustl.edu	37	chr10	104835989	104835990	+	Frame_Shift_Ins	INS	-	-	C													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ccaagtctacatccccgattINSactcggtgcgagccctttcg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	10	104835989	104835990	-	C	INS	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	frame_shift_ins	c.2383_2384	p.Y795fs	1.000:1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	14	0	0	9	4	30.77	-	-	-	C	104835990	-	C	104835989	7	5	272	1	0	1	1	0	0	0	0	0	3643	1754	61	0	2448	0	CNNM2	10	104835989	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09		104835989	30698758	18	25615										
SLAIN1	0	genome.wustl.edu	37	chr13	78335020	78335020	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cgtggggcatttcccagtgtCtatccgacagcctcttaaag	10	12	2	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	13	78335020	78335020	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	1	known	missense	c.1406	p.S469F	0.998	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	235	0	0	146	66	31.13	-	-	-	T	78335020	C	T	78335020	3	4	272	1	0	0	0	0	1	0	0	0	14454	913	32	2	767	2	SLAIN1	13	78335020	Missense_Mutation	SNP	C	TCGA-AN-A03X-01A-21W-A019-09		78335020	36834858	19	25616										
ZFP36L1	0	genome.wustl.edu	37	chr14	69257141	69257142	+	Frame_Shift_Ins	INS	-	-	C													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	agcccccaccagcaggggtgINScccactgcctttctgtccag							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	69257141	69257142	-	C	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.126_125	p.T43fs	0.968:1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	38	0	0	26	7	21.21	-	-	-	C	69257142	-	C	69257141	7	5	272	1	0	1	1	0	0	0	0	0	17742	1306	46	0	894	0	ZFP36L1	14	69257141	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09		69257141	38092399	20	25617										
ACTN1	0	genome.wustl.edu	37	chr14	69349765	69349767	+	In_Frame_Del	DEL	GTC	GTC	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tgaactgctcatgggctgtgGtcagtccctggacagagatg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	69349765	69349767	GTC	-	DEL	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	in_frame_del	c.1643_1641	p.T549in_frame_del	1.000:1.000:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	76	0	0	40	29	41.43	-	-	-	-	69349767	GTC	-	69349765	7	5	272	1	0	1	0	1	0	0	0	0	204	1261	44	0	1133	0	ACTN1	14	69349765	In_Frame_Del	DEL	GTC	TCGA-AN-A03X-01A-21W-A019-09	92624	69349765	37999775	21	25618										
AHNAK2	0	genome.wustl.edu	37	chr14	105408889	105408890	+	Frame_Shift_Ins	INS	-	-	GG													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cggcatcttgaacttgggcaINSttttgaacttgctgtctttg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105408889	105408890	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12899_12898	p.M4300fs	0.885:0.839	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	125	0	0	57	34	37.36	-	-	-	GG	105408890	-	GG	105408889	7	5	272	1	0	1	1	0	0	0	0	0	415	217	8	0	4492	0	AHNAK2	14	105408889	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	36059124	105408889	1940651	22	25619	230	2	1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105408895	105408895	+	Frame_Shift_Del	DEL	A	A	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tcttgaacttgggcattttgAacttgctgtctttggcagtc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105408895	105408895	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.12893	p.F4298fs	0.080	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	124	0	0	57	79	58.09	-	-	-	-	105408895	A	-	105408895	7	5	272	1	0	1	0	1	0	0	0	0	415	246	9	0	4498	0	AHNAK2	14	105408895	Frame_Shift_Del	DEL	A	TCGA-AN-A03X-01A-21W-A019-09	6	105408895	1940645	23	25620	230	2	1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105409384	105409385	+	Frame_Shift_Ins	INS	-	-	GG													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tggcatcttgaacttgggcaINSttttgaacttgctgtctttg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409384	105409385	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12404_12403	p.M4135fs	0.769:0.474	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	118	0	0	79	53	40.15	-	-	-	GG	105409385	-	GG	105409384	7	5	272	1	0	1	1	0	0	0	0	0	415	217	8	0	4987	0	AHNAK2	14	105409384	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	489	105409384	1940156	24	25621	231	2	1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105409390	105409390	+	Frame_Shift_Del	DEL	A	A	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tcttgaacttgggcattttgAacttgctgtctttggcagtc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409390	105409390	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.12398	p.F4133fs	0.988	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	120	0	0	68	148	64.35	-	-	-	-	105409390	A	-	105409390	7	5	272	1	0	1	0	1	0	0	0	0	415	246	9	0	4993	0	AHNAK2	14	105409390	Frame_Shift_Del	DEL	A	TCGA-AN-A03X-01A-21W-A019-09	6	105409390	1940150	25	25622	231	2	1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105409649	105409650	+	Frame_Shift_Ins	INS	-	-	TT													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ttgggcaggtgccctttgagINSgctggctccctcgggcacgg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409649	105409650	-	TT	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12139_12138	p.L4046fs	0.000:0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	102	0	0	81	107	56.91	-	-	-	TT	105409650	-	TT	105409649	7	5	272	1	0	1	1	0	0	0	0	0	415	1000	35	0	5252	0	AHNAK2	14	105409649	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	259	105409649	1939891	26	25623			1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105409879	105409880	+	Frame_Shift_Ins	INS	-	-	GG													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cggcatcttgaacttgggcaINSttttgaacttgctgtctttg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409879	105409880	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11909_11908	p.M3970fs	0.180:0.170	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	133	0	0	42	37	46.84	-	-	-	GG	105409880	-	GG	105409879	7	5	272	1	0	1	1	0	0	0	0	0	415	217	8	0	5482	0	AHNAK2	14	105409879	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	230	105409879	1939661	27	25624	232	2	1	56		7	4	997	N	A_-	2.800716e-10
AHNAK2	0	genome.wustl.edu	37	chr14	105409885	105409885	+	Frame_Shift_Del	DEL	A	A	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tcttgaacttgggcattttgAacttgctgtctttggccgtc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409885	105409885	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.11903	p.F3968fs	0.873	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	133	0	0	47	108	69.68	-	-	-	-	105409885	A	-	105409885	7	5	272	1	0	1	0	1	0	0	0	0	415	246	9	0	5488	0	AHNAK2	14	105409885	Frame_Shift_Del	DEL	A	TCGA-AN-A03X-01A-21W-A019-09	6	105409885	1939655	28	25625	232	2	1	56		7	4	997	N	A_-	2.800716e-10
PPIB	0	genome.wustl.edu	37	chr15	64449058	64449058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cacccagccaggcccgtagtGcttcagtttgaagttctcat	9	13	2	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	15	64449058	64449058	G	A	SNP	PPIB	ENST00000300026	human	ensembl	69_37n	-1	known	missense	c.394	p.H132Y	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIB	HGNC	ENSG00000166794	173	0	0	104	26	20	-	-	-	A	64449058	G	A	64449058	3	1	272	1	0	0	0	0	1	0	0	0	12396	1319	46	4	264	4	PPIB	15	64449058	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09		64449058	38082334	29	25626										
FAM57B	0	genome.wustl.edu	37	chr16	30037078	30037078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tcttgccaaggcagacgaagGgcgtgctgacctctgccatc	12	13	2	2			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	16	30037078	30037078	G	A	SNP	FAM57B	ENST00000380495	human	ensembl	69_37n	-1	known	missense	c.509	p.P170L	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926	48	0	0	45	15	25	-	-	-	A	30037078	G	A	30037078	3	1	272	1	0	0	0	0	1	0	0	0	5634	1232	43	4	323	4	FAM57B	16	30037078	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09		30037078	60317675	30	25627										
MYH8	0	genome.wustl.edu	37	chr17	10304230	10304230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tagttgaatttctacagcttGctcatcttcaattttgctta	5	8	4	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	17	10304230	10304230	G	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.3301	p.Q1101K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	132	0	0	94	15	13.76	-	-	-	T	10304230	G	T	10304230	3	4	272	1	0	0	0	0	1	0	0	0	10113	1328	46	4	2572	4	MYH8	17	10304230	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09		10304230	70890980	31	25628										
GATA6	0	genome.wustl.edu	37	chr18	19761419	19761419	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ttgtactgtttctagccttcAtcacggcggcttggattgtc	10	10	3	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	18	19761419	19761419	A	G	SNP	GATA6	ENST00000269216	human	ensembl	69_37n	1	known	silent	c.1308	p.S436	0.464	pfscan_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA6	HGNC	ENSG00000141448	106	0	0	48	6	11.11	-	-	-	G	19761419	A	G	19761419	2	3	272	1	0	0	0	0	0	0	0	1	6308	204	8	5		5	GATA6	18	19761419	Silent	SNP	A	TCGA-AN-A03X-01A-21W-A019-09		19761419	58315829	32	25629										
WDR7	0	genome.wustl.edu	37	chr18	54694371	54694371	+	Frame_Shift_Del	DEL	T	T	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cctcaagctggcccggctcaTctggacttccaaccgcaacg							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	18	54694371	54694371	T	-	DEL	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	frame_shift_del	c.4406	p.I1469fs	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	41	0	0	25	22	46.81	-	-	-	-	54694371	T	-	54694371	7	5	272	1	0	1	0	1	0	0	0	0	17417	1435	50	0	4512	0	WDR7	18	54694371	Frame_Shift_Del	DEL	T	TCGA-AN-A03X-01A-21W-A019-09	34932952	54694371	23382877	33	25630										
DCAF15	0	genome.wustl.edu	37	chr19	14069901	14069902	+	Frame_Shift_Ins	INS	-	-	GG													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	gtatgaccacagcacctgccINSccctggcgcctgccagcccc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	14069901	14069902	-	GG	INS	DCAF15	ENST00000254337	human	ensembl	69_37n	1	known	frame_shift_ins	c.829_830	p.P277fs	0.017:0.033	NULL	NULL	-	no_errors	DCAF15	HGNC	ENSG00000132017	32	0	0	13	8	38.1	-	-	-	GG	14069902	-	GG	14069901	7	5	272	1	0	1	1	0	0	0	0	0	4299	623	22	0	855	0	DCAF15	19	14069901	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09		14069901	45059082	34	25631										
NCAN	0	genome.wustl.edu	37	chr19	19337625	19337626	+	Frame_Shift_Del	DEL	CG	CG	-													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cactgcagcaagttcacacaCggaggtggccccaactgacc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	19337625	19337626	CG	-	DEL	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	frame_shift_del	c.1403_1404	p.T468fs	0.004:0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	19	0	0	4	4	50	-	-	-	-	19337626	CG	-	19337625	7	5	272	1	0	1	0	1	0	0	0	0	10276	536	19	0	1425	0	NCAN	19	19337625	Frame_Shift_Del	DEL	CG	TCGA-AN-A03X-01A-21W-A019-09	5267724	19337625	39791358	35	25632										
PTOV1	0	genome.wustl.edu	37	chr19	50363394	50363395	+	Frame_Shift_Ins	INS	-	-	T													0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cgtgtcattgccaaccagcaINSgcaggtcctgcagcggaacc							TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	50363394	50363395	-	T	INS	PTOV1	ENST00000391842	human	ensembl	69_37n	1	known	frame_shift_ins	c.1193_1194	p.Q398fs	1.000:1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960	54	0	0	13	10	43.48	-	-	-	T	50363395	-	T	50363394	7	5	272	1	0	1	1	0	0	0	0	0	12850	188	7	0	1235	0	PTOV1	19	50363394	Frame_Shift_Ins	INS	-	TCGA-AN-A03X-01A-21W-A019-09	31025769	50363394	8765589	36	25633										
BMP2	0	genome.wustl.edu	37	chr20	6759416	6759416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ccaaacacaaacagcggaaaCgccttaagtccagctgtaag	8	12	0	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	20	6759416	6759416	C	T	SNP	BMP2	ENST00000378827	human	ensembl	69_37n	1	known	missense	c.871	p.R291C	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845	73	0	0	113	63	35.8	-	-	-	T	6759416	C	T	6759416	3	4	272	1	0	0	0	0	1	0	0	0	1464	536	19	1	877	1	BMP2	20	6759416	Missense_Mutation	SNP	C	TCGA-AN-A03X-01A-21W-A019-09		6759416	56266104	37	25634										
JAG1	0	genome.wustl.edu	37	chr20	10629222	10629222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	agaggtttccagagaaaccaGtgggacacagacactggaat	12	8	0	3			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	20	10629222	10629222	G	A	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.1544	p.T515I	1.000	pfam_EGF-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	105	0	0	159	600	78.95	-	-	-	A	10629222	G	A	10629222	3	1	272	1	0	0	0	0	1	0	0	0	7988	1029	36	4	2172	4	JAG1	20	10629222	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09	3869806	10629222	52396298	38	25635										
TTC3	0	genome.wustl.edu	37	chr21	38538542	38538542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	ataaacgtgttaccaggtttGccccagtacaccagcatata	7	11	0	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	21	38538542	38538542	G	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.4026	p.L1342F	0.955	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	257	0	0	156	58	27.1	-	-	-	T	38538542	G	T	38538542	3	4	272	1	0	0	0	0	1	0	0	0	16794	1310	46	4	4152	4	TTC3	21	38538542	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09		38538542	9591353	39	25636										
HDAC6	0	genome.wustl.edu	37	chrX	48665033	48665033	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	cagaactcatactcctgtgcCtgcctggcctcaggctctgt	9	15	3	1			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	X	48665033	48665033	C	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	silent	c.594	p.A198	0.998	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	71	0	0	86	36	29.51	-	-	-	A	48665033	C	A	48665033	2	1	272	1	0	0	0	0	0	0	0	1	7062	668	24	4		4	HDAC6	23	48665033	Silent	SNP	C	TCGA-AN-A03X-01A-21W-A019-09		48665033	106605527	40	25637										
IL13RA2	0	genome.wustl.edu	37	chrX	114242611	114242611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.027027027027027	1	0.99043758096535	0.695081967213115	0	0.772313296903461	1	1	0	tttcatttgttgttttcaagGtgtatgtttcattttcaact	6	5	4	0			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	X	114242611	114242611	G	A	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.881	p.T294I	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	173	0	0	227	61	21.11	-	-	-	A	114242611	G	A	114242611	3	1	272	1	0	0	0	0	1	0	0	0	7684	1261	44	4	273	4	IL13RA2	23	114242611	Missense_Mutation	SNP	G	TCGA-AN-A03X-01A-21W-A019-09	65577578	114242611	41027949	41	25638										
HLTF	0	genome.wustl.edu	37	chr3	148750058	148750058	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	attttggcttgtttcatttcGtcagcatttggttttttagt	8	5	2	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	3	148750058	148750058	G	A	SNP	HLTF	ENST00000310053	human	ensembl	69_37n	-1	known	silent	c.2979	p.D993	0.956	pfscan_Helicase_C	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794	70	0	0	71	14	16.47	-	-	-	A	148750058	G	A	148750058	2	1	273	1	0	0	0	0	0	0	0	1	7266	1136	40	1		1	HLTF	3	148750058	Silent	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		148750058	49272372	1	25639										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	132	0	0	176	100	36.23	-	-	-	G	178952085	A	G	178952085	3	3	273	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A03Y-01A-21W-A019-09	30202027	178952085	19070345	2	25640										
HRASLS	0	genome.wustl.edu	37	chr3	192988399	192988399	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	ttgtttccttataggccaacCgagcgataagtaccgttgag	10	9	0	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	3	192988399	192988399	C	A	SNP	HRASLS	ENST00000264735	human	ensembl	69_37n	1	known	silent	c.412	p.R138	1.000	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	HRASLS	HGNC	ENSG00000127252	98	0	0	124	45	26.63	-	-	-	A	192988399	C	A	192988399	2	1	273	1	0	0	0	0	0	0	0	1	7400	644	23	3		3	HRASLS	3	192988399	Silent	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09	14036314	192988399	5034031	3	25641										
HIST1H1T	0	genome.wustl.edu	37	chr6	26107849	26107849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	taacagttttaggagttgtcGctctcggcttcttggctctc	10	10	3	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	6	26107849	26107849	G	A	SNP	HIST1H1T	ENST00000338379	human	ensembl	69_37n	-1	known	missense	c.473	p.A158V	0.000	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475	148	0	0	193	111	36.51	-	-	-	A	26107849	G	A	26107849	3	1	273	1	0	0	0	0	1	0	0	0	7178	1087	38	1	154	1	HIST1H1T	6	26107849	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		26107849	145007218	4	25642										
HIST1H3G	0	genome.wustl.edu	37	chr6	26271482	26271482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	cgcgcagagccacggtgccgGgacggtagcgatgaggtttc	17	11	0	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	6	26271482	26271482	G	A	SNP	HIST1H3G	ENST00000305910	human	ensembl	69_37n	-1	known	missense	c.131	p.P44L	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	83	0	0	99	51	34	-	-	-	A	26271482	G	A	26271482	3	1	273	1	0	0	0	0	1	0	0	0	7212	1232	43	4	283	4	HIST1H3G	6	26271482	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09	163633	26271482	144843585	5	25643										
TRIM26	0	genome.wustl.edu	37	chr6	30157808	30157808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	acctgtttaggaagtctctcGtgtcctagaagggaaagaaa	11	7	1	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	6	30157808	30157808	G	A	SNP	TRIM26	ENST00000437089	human	ensembl	69_37n	-1	known	missense	c.770	p.T257M	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127	58	0	0	87	15	14.71	-	-	-	A	30157808	G	A	30157808	3	1	273	1	0	0	0	0	1	0	0	0	16596	1145	40	1	865	1	TRIM26	6	30157808	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09	3886326	30157808	140957259	6	25644										
TNFRSF21	0	genome.wustl.edu	37	chr6	47253822	47253822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	ttgtctgtctccttggtcccCggcttgatcaccaccaggtt	9	14	3	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	6	47253822	47253822	C	T	SNP	TNFRSF21	ENST00000296861	human	ensembl	69_37n	-1	known	silent	c.606	p.P202	0.952	smart_TNFR/NGFR_Cys_rich_reg	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_21,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	98	0	0	130	106	44.73	-	-	-	T	47253822	C	T	47253822	2	4	273	1	0	0	0	0	0	0	0	1	16390	639	23	1		1	TNFRSF21	6	47253822	Silent	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09	17096014	47253822	123861245	7	25645										
CALCR	0	genome.wustl.edu	37	chr7	93065277	93065278	+	Frame_Shift_Del	DEL	AG	AG	-													0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	tccttacctggaaatgaatcAgagagtgcatcacgtaatca							TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	7	93065277	93065278	AG	-	DEL	CALCR	ENST00000359558	human	ensembl	69_37n	-1	known	frame_shift_del	c.1238_1237	p.L413fs	1.000:0.998	pfam_GPCR_2_secretin-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	CALCR	HGNC	ENSG00000004948	56	0	0	48	33	40.74	-	-	-	-	93065278	AG	-	93065277	7	5	273	1	0	1	0	1	0	0	0	0	2604	188	7	0	300	0	CALCR	7	93065277	Frame_Shift_Del	DEL	AG	TCGA-AN-A03Y-01A-21W-A019-09		93065277	66073386	8	25646										
PREX2	0	genome.wustl.edu	37	chr8	69012077	69012077	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	gagaatatccagttataaaaAggtaagtgttctattgattt	8	3	1	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	8	69012077	69012077	A	C	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.2714	p.K905T	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	187	0	0	822	149	15.31	-	-	-	C	69012077	A	C	69012077	3	2	273	1	0	0	0	0	1	0	0	0	12558	86	3	5	2804	5	PREX2	8	69012077	Missense_Mutation	SNP	A	TCGA-AN-A03Y-01A-21W-A019-09		69012077	77351945	9	25647										
SLC18A3	0	genome.wustl.edu	37	chr10	50820002	50820002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	cagcactgctgcccacgctcGccttcctggtggacgtgcgc	12	17	0	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	10	50820002	50820002	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	69_37n	1	known	missense	c.1216	p.A406T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714	46	0	0	10	12	54.55	-	-	-	A	50820002	G	A	50820002	3	1	273	1	0	0	0	0	1	0	0	0	14516	1087	38	1	1218	1	SLC18A3	10	50820002	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		50820002	84714745	10	25648										
LGI1	0	genome.wustl.edu	37	chr10	95557009	95557009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	actcccatcaatccttacacGcgtggtacagggacactgat	8	13	1	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	10	95557009	95557009	G	A	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.1123	p.A375T	0.725	pfam_EPTP,superfamily_WD40_repeat_dom	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	168	0	0	129	99	43.42	-	-	-	A	95557009	G	A	95557009	3	1	273	1	0	0	0	0	1	0	0	0	8806	1087	38	1	1153	1	LGI1	10	95557009	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09	44737007	95557009	39977738	11	25649										
DEPDC7	0	genome.wustl.edu	37	chr11	33054005	33054005	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	tgttgcagcaaatccttctgAgtttaaattacagaaagaag	8	6	1	3			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	11	33054005	33054005	A	C	SNP	DEPDC7	ENST00000241051	human	ensembl	69_37n	1	known	missense	c.1118	p.E373A	1.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690	162	0	0	99	105	51.47	-	-	-	C	33054005	A	C	33054005	3	2	273	1	0	0	0	0	1	0	0	0	4480	304	11	5	1190	5	DEPDC7	11	33054005	Missense_Mutation	SNP	A	TCGA-AN-A03Y-01A-21W-A019-09		33054005	101952511	12	25650										
UBC	0	genome.wustl.edu	37	chr12	125396469	125396469	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	gagggtgatggtcttaccagTcagggtcttcacgaagattt	13	7	4	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	12	125396469	125396469	T	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.1849	p.T617P	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	204	0	0	136	44	24.31	-	-	-	G	125396469	T	G	125396469	3	3	273	1	0	0	0	0	1	0	0	0	16939	1667	58	5	212	5	UBC	12	125396469	Missense_Mutation	SNP	T	TCGA-AN-A03Y-01A-21W-A019-09		125396469	8455426	13	25651										
TPP2	0	genome.wustl.edu	37	chr13	103309552	103309552	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	gatcttaaaattcagtggatGacaaagtaggtttttaaatg	9	3	2	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	13	103309552	103309552	G	A	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.3099	p.M1033I	1.000	NULL	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	92	0	0	109	58	34.73	-	-	-	A	103309552	G	A	103309552	3	1	273	1	0	0	0	0	1	0	0	0	16508	1290	45	2	3193	2	TPP2	13	103309552	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		103309552	11860326	14	25652										
COL4A1	0	genome.wustl.edu	37	chr13	110864808	110864808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	acctggggggcctggcgggcCgtcttggccaggaattccct	16	13	1	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	13	110864808	110864808	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.343	p.G115S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	173	0	0	248	76	23.46	-	-	-	T	110864808	C	T	110864808	3	4	273	1	0	0	0	0	1	0	0	0	3719	652	23	1	4854	1	COL4A1	13	110864808	Missense_Mutation	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09	7555256	110864808	4305070	15	25653										
WDHD1	0	genome.wustl.edu	37	chr14	55411176	55411176	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	tcttctaaccacatctggaaCccggtctttggcctaaaatc	6	13	4	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	14	55411176	55411176	C	A	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	silent	c.3063	p.G1021	0.993	superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	92	0	0	97	28	22.4	-	-	-	A	55411176	C	A	55411176	2	1	273	1	0	0	0	0	0	0	0	1	17368	494	18	4		4	WDHD1	14	55411176	Silent	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09		55411176	51938364	16	25654										
HIF1A	0	genome.wustl.edu	37	chr14	62187184	62187184	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	tctgaagttttttatgagctTgctcatcagttgccacttcc	7	10	3	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	14	62187184	62187184	T	C	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	silent	c.192	p.L64	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	189	0	0	121	104	46.02	-	-	-	C	62187184	T	C	62187184	2	2	273	1	0	0	0	0	0	0	0	1	7154	1799	63	5		5	HIF1A	14	62187184	Silent	SNP	T	TCGA-AN-A03Y-01A-21W-A019-09	6776008	62187184	45162356	17	25655										
KIF7	0	genome.wustl.edu	37	chr15	90185484	90185484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	cctgcggaactcctggagccGagaccgctcgccagcatcct	11	17	0	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	15	90185484	90185484	G	A	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.2344	p.R782W	0.986	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	15	0	0	13	8	38.1	-	-	-	A	90185484	G	A	90185484	3	1	273	1	0	0	0	0	1	0	0	0	8361	1057	37	1	1723	1	KIF7	15	90185484	Missense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		90185484	12345908	18	25656										
TMC5	0	genome.wustl.edu	37	chr16	19498308	19498308	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	cctgctgccctttatccaaaTgattatgcttttcatcatgt	5	11	2	1			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	16	19498308	19498308	T	A	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.2405	p.M802K	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	152	0	0	222	140	38.67	-	-	-	A	19498308	T	A	19498308	3	1	273	1	0	0	0	0	1	0	0	0	16083	1464	51	5	2773	5	TMC5	16	19498308	Missense_Mutation	SNP	T	TCGA-AN-A03Y-01A-21W-A019-09		19498308	70856445	19	25657										
CDH1	0	genome.wustl.edu	37	chr16	68835596	68835596	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	attttgaagattgcaccggtCgacaaaggacagcctatttt	9	8	0	2			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	16	68835596	68835596	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.187	p.R63*	0.175	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	134	0	0	82	135	62.21	-	-	-	T	68835596	C	T	68835596	4	4	273	1	0	0	0	0	0	1	0	0	3124	876	31	1	197	1	CDH1	16	68835596	Nonsense_Mutation	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09	49337288	68835596	21519157	20	25658										
THOC1	0	genome.wustl.edu	37	chr18	225118	225119	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	tttgaaaatctttctccatcINSgggggggttttcagatagta							TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	18	225118	225119	-	G	INS	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1108_1107	p.D369fs	1.000:0.059	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	32	0	0	33	4	10.81	-	-	-	G	225119	-	G	225118	7	5	273	1	0	1	1	0	0	0	0	0	15959	884	31	0	897	0	THOC1	18	225118	Frame_Shift_Ins	INS	-	TCGA-AN-A03Y-01A-21W-A019-09		225118	77852130	21	25659										
NEDD4L	0	genome.wustl.edu	37	chr18	56063421	56063421	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	ttaatcgccttgacttacctCcatatgaaacctttgaagat	5	10	0	4			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	18	56063421	56063421	C	G	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.2848	p.P950A	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	21	0	0	21	10	32.26	-	-	-	G	56063421	C	G	56063421	3	3	273	1	0	0	0	0	1	0	0	0	10383	855	30	2	2998	2	NEDD4L	18	56063421	Missense_Mutation	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09	55838303	56063421	22013827	22	25660										
FCGBP	0	genome.wustl.edu	37	chr19	40383695	40383695	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	ttctcagcccccaagggtggTccgtggcagggtgcactcag	14	13	2	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	19	40383695	40383695	T	C	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9915	p.G3305	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	22	0	0	20	4	16	-	-	-	C	40383695	T	C	40383695	2	2	273	1	0	0	0	0	0	0	0	1	5824	1654	58	5		5	FCGBP	19	40383695	Silent	SNP	T	TCGA-AN-A03Y-01A-21W-A019-09		40383695	18745288	23	25661										
ZNF586	0	genome.wustl.edu	37	chr19	58290700	58290701	+	Frame_Shift_Ins	INS	-	-	T													0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	ctttgctgaaaactccagtcINSttattaaacacttgagagtt							TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	19	58290700	58290701	-	T	INS	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	frame_shift_ins	c.745_746	p.I250fs	0.010:0.020	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	203	0	0	207	124	37.46	-	-	-	T	58290701	-	T	58290700	7	5	273	1	0	1	1	0	0	0	0	0	18115	913	32	0	755	0	ZNF586	19	58290700	Frame_Shift_Ins	INS	-	TCGA-AN-A03Y-01A-21W-A019-09	17907005	58290700	838283	24	25662										
CST2	0	genome.wustl.edu	37	chr20	23807084	23807084	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	acccacctgctccctggctcGtagcacccgcagcaggcgtc	10	19	0	0			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	20	23807084	23807084	G	A	SNP	CST2	ENST00000304725	human	ensembl	69_37n	-1	known	nonsense	c.214	p.R72*	0.007	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST2	HGNC	ENSG00000170369	26	0	0	30	20	39.22	-	-	-	A	23807084	G	A	23807084	4	1	273	1	0	0	0	0	0	1	0	0	4004	1153	40	1	223	1	CST2	20	23807084	Nonsense_Mutation	SNP	G	TCGA-AN-A03Y-01A-21W-A019-09		23807084	39218436	25	25663										
ZBED4	0	genome.wustl.edu	37	chr22	50280507	50280507	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	2	0.884573867541399	1.05442176870748	0	1.13553113553114	0.333333333333333	0.930327025915261	0	cgcagaggagaacctgtggtCacttgtggccaaggtgaaga	15	8	1	4			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4849adc-b6e8-40bd-9de4-dc5bb37d2a79	c75fcb7d-04da-4c92-a5cd-9a34a370773c	22	50280507	50280507	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.3197	p.S1066L	1.000	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	36	0	0	31	21	39.62	-	-	-	T	50280507	C	T	50280507	3	4	273	1	0	0	0	0	1	0	0	0	17616	838	29	2	3199	2	ZBED4	22	50280507	Missense_Mutation	SNP	C	TCGA-AN-A03Y-01A-21W-A019-09		50280507	1024059	26	25664										
FLG	0	genome.wustl.edu	37	chr1	152279873	152279873	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ggcatcagaccttccctgggAtgtggtgtggctgtgatgag	16	8	1	3			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	1	152279873	152279873	A	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7489	p.S2497P	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	299	2	0.66	255	39	13.22	-	-	-	G	152279873	A	G	152279873	3	3	274	1	0	0	0	0	1	0	0	0	5968	333	12	5	4700	5	FLG	1	152279873	Missense_Mutation	SNP	A	TCGA-AN-A041-01A-11W-A050-09		152279873	96970748	1	25665										
ISG20L2	0	genome.wustl.edu	37	chr1	156697031	156697031	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	gatttcttctgggagctcttCttctgagagcgggttgggtg	15	7	5	1			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	1	156697031	156697031	C	A	SNP	ISG20L2	ENST00000313146	human	ensembl	69_37n	-1	known	missense	c.414	p.K138N	0.992	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319	94	0	0	110	64	36.78	-	-	-	A	156697031	C	A	156697031	3	1	274	1	0	0	0	0	1	0	0	0	7909	912	32	2	659	2	ISG20L2	1	156697031	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09	4417158	156697031	92553590	2	25666										
CD1B	0	genome.wustl.edu	37	chr1	158299375	158299375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ggtagaatcctgagacatggCacacaagctgcagacggcca	12	11	0	3			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	1	158299375	158299375	C	T	SNP	CD1B	ENST00000368168	human	ensembl	69_37n	-1	known	missense	c.671	p.C224Y	0.992	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1B	HGNC	ENSG00000158485	268	0	0	326	53	13.91	-	-	-	T	158299375	C	T	158299375	3	4	274	1	0	0	0	0	1	0	0	0	3004	710	25	4	342	4	CD1B	1	158299375	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09	1602344	158299375	90951246	3	25667										
RTN4	0	genome.wustl.edu	37	chr2	55253661	55253661	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ttgtgacataatctgtctcaGaatcctgtgctgctacaaga	8	9	2	3			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	2	55253661	55253661	G	A	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.1574	p.S525F	0.230	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	381	0	0	674	172	20.33	-	-	-	A	55253661	G	A	55253661	3	1	274	1	0	0	0	0	1	0	0	0	13814	942	33	2	2070	2	RTN4	2	55253661	Missense_Mutation	SNP	G	TCGA-AN-A041-01A-11W-A050-09		55253661	187945712	4	25668										
SNRNP200	0	genome.wustl.edu	37	chr2	96944396	96944396	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ggactgctccaggtcactcaGggtctgctccaccagctctg	11	15	4	0			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	2	96944396	96944396	G	C	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.5377	p.L1793V	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	172	0	0	158	27	14.59	-	-	-	C	96944396	G	C	96944396	3	2	274	1	0	0	0	0	1	0	0	0	14941	991	35	4	1065	4	SNRNP200	2	96944396	Missense_Mutation	SNP	G	TCGA-AN-A041-01A-11W-A050-09	41690735	96944396	146254977	5	25669										
ZAP70	0	genome.wustl.edu	37	chr2	98354541	98354541	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	gagtgtccacccgaactgtaCgcactcatgagtgactgctg	11	12	1	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	2	98354541	98354541	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	silent	c.1707	p.Y569	0.165	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	238	0	0	256	57	18.21	-	-	-	T	98354541	C	T	98354541	2	4	274	1	0	0	0	0	0	0	0	1	17611	547	19	1		1	ZAP70	2	98354541	Silent	SNP	C	TCGA-AN-A041-01A-11W-A050-09	1410145	98354541	144844832	6	25670										
RARB	0	genome.wustl.edu	37	chr3	25502731	25502731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	aggaactcgtcccaagccccCcatctccacttcctccccct	4	22	1	0			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	3	25502731	25502731	C	T	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	missense	c.226	p.P76S	1.000	prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	323	0	0	399	130	24.57	-	-	-	T	25502731	C	T	25502731	3	4	274	1	0	0	0	0	1	0	0	0	13136	623	22	4	211	4	RARB	3	25502731	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09		25502731	172519699	7	25671										
DALRD3	0	genome.wustl.edu	37	chr3	49055227	49055227	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	gctctctccgaggcagcgggCcagtccacccgcagttgctg							TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	3	49055227	49055227	C	-	DEL	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	frame_shift_del	c.537	p.W179fs	1.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	19	0	0	4	2	33.33	-	-	-	-	49055227	C	-	49055227	7	5	274	1	0	1	0	1	0	0	0	0	4261	740	26	0	1134	0	DALRD3	3	49055227	Frame_Shift_Del	DEL	C	TCGA-AN-A041-01A-11W-A050-09	23552496	49055227	148967203	8	25672										
TNFAIP8	0	genome.wustl.edu	37	chr5	118728611	118728611	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	atcgccaccaccttaatagaCgacacaagtagtgaggtgct	9	11	0	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	5	118728611	118728611	C	T	SNP	TNFAIP8	ENST00000504771	human	ensembl	69_37n	1	known	silent	c.132	p.D44	0.445	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8	HGNC	ENSG00000145779	128	0	0	108	26	19.4	-	-	-	T	118728611	C	T	118728611	2	4	274	1	0	0	0	0	0	0	0	1	16371	535	19	1		1	TNFAIP8	5	118728611	Silent	SNP	C	TCGA-AN-A041-01A-11W-A050-09		118728611	62186649	9	25673										
TGFBI	0	genome.wustl.edu	37	chr5	135385250	135385250	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	actttgaaccgtatcctgggCgacccagaagccctgagagg	12	12	0	3			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	5	135385250	135385250	C	T	SNP	TGFBI	ENST00000514554	human	ensembl	69_37n	1	novel	nonsense	c.46	p.R16*	0.530	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TGFBI	HGNC	ENSG00000120708	96	0	0	107	14	11.57	-	-	-	T	135385250	C	T	135385250	4	4	274	1	0	0	0	0	0	1	0	0	15915	755	27	1	920	1	TGFBI	5	135385250	Nonsense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09	16656639	135385250	45530010	10	25674										
STK3	0	genome.wustl.edu	37	chr8	99719442	99719442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ctgtattgaggagaatatttCcagcttttatatctctgtgt	8	6	1	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	8	99719442	99719442	C	A	SNP	STK3	ENST00000419617	human	ensembl	69_37n	-1	known	missense	c.449	p.G150V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK3	HGNC	ENSG00000104375	138	0	0	348	44	11.22	-	-	-	A	99719442	C	A	99719442	3	1	274	1	0	0	0	0	1	0	0	0	15386	855	30	2	1054	2	STK3	8	99719442	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09		99719442	46644580	11	25675										
SHC3	0	genome.wustl.edu	37	chr9	91727508	91727508	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	tgtactgaagtcaagagaccTcattgagcgcagaacttcaa	9	9	3	4			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	9	91727508	91727508	T	G	SNP	SHC3	ENST00000375835	human	ensembl	69_37n	-1	known	silent	c.508	p.R170	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,prints_PID_domain	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2,prints_PID_domain,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082	222	0	0	281	76	21.29	-	-	-	G	91727508	T	G	91727508	2	3	274	1	0	0	0	0	0	0	0	1	14361	1550	54	5		5	SHC3	9	91727508	Silent	SNP	T	TCGA-AN-A041-01A-11W-A050-09		91727508	49485923	12	25676										
GATA3	0	genome.wustl.edu	37	chr10	8111498	8111499	+	Frame_Shift_Del	DEL	GA	GA	-													0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	accaccacaaccacactctgGaggaggaatgccaatgggga							TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	10	8111498	8111499	GA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.987_988	p.R330fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	158	0	0	197	89	30.48	-	-	-	-	8111499	GA	-	8111498	7	5	274	1	0	1	0	1	0	0	0	0	6305	1183	41	0	1001	0	GATA3	10	8111498	Frame_Shift_Del	DEL	GA	TCGA-AN-A041-01A-11W-A050-09		8111498	127423249	13	25677										
PLXDC2	0	genome.wustl.edu	37	chr10	20290912	20290912	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	caggacaataacactcagatCgaggtagataaatagtctgg	10	7	2	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	10	20290912	20290912	C	A	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	silent	c.321	p.I107	0.946	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	139	0	0	180	34	15.89	-	-	-	A	20290912	C	A	20290912	2	1	274	1	0	0	0	0	0	0	0	1	12192	874	31	3		3	PLXDC2	10	20290912	Silent	SNP	C	TCGA-AN-A041-01A-11W-A050-09	12179414	20290912	115243835	14	25678										
ARHGAP12	0	genome.wustl.edu	37	chr10	32106730	32106730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	acatacctgattattgattgTactactaagaactttaaacc	4	8	0	3			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	10	32106730	32106730	T	C	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.1717	p.T573A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	137	1	0.72	283	63	18.21	-	-	-	C	32106730	T	C	32106730	3	2	274	1	0	0	0	0	1	0	0	0	867	1638	57	5	855	5	ARHGAP12	10	32106730	Missense_Mutation	SNP	T	TCGA-AN-A041-01A-11W-A050-09	11815818	32106730	103428017	15	25679										
RASGRP2	0	genome.wustl.edu	37	chr11	64497599	64497600	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ttgtgtacgaagcccatgcgINScccccccaacacagagctgg							TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	11	64497599	64497600	-	C	INS	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1480_1479	p.R493fs	1.000:1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	18	0	0	31	4	11.43	-	-	-	C	64497600	-	C	64497599	7	5	274	1	0	1	1	0	0	0	0	0	13158	1087	38	0	365	0	RASGRP2	11	64497599	Frame_Shift_Ins	INS	-	TCGA-AN-A041-01A-11W-A050-09		64497599	70508917	16	25680										
DYNC1H1	0	genome.wustl.edu	37	chr14	102494097	102494097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	aggttatccgcaacctccacGtcgtgttcaccatgaacccg	8	15	1	1			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	14	102494097	102494097	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.9190	p.V3064I	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	134	0	0	131	41	23.7	-	-	-	A	102494097	G	A	102494097	3	1	274	1	0	0	0	0	1	0	0	0	4876	1145	40	1	9376	1	DYNC1H1	14	102494097	Missense_Mutation	SNP	G	TCGA-AN-A041-01A-11W-A050-09		102494097	4855443	17	25681										
DHX8	0	genome.wustl.edu	37	chr17	41590796	41590796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	gtatctactatgtggtggacCcaggattcgtgaaacagaaa	11	7	1	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	17	41590796	41590796	C	T	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	missense	c.2569	p.P857S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	146	0	0	400	50	11.09	-	-	-	T	41590796	C	T	41590796	3	4	274	1	0	0	0	0	1	0	0	0	4551	623	22	4	2635	4	DHX8	17	41590796	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09		41590796	39604414	18	25682										
ZCCHC2	0	genome.wustl.edu	37	chr18	60230264	60230264	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	atattggtacaagttgttctCcattggatgggcttaccatg	10	7	1	0			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	18	60230264	60230264	C	A	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.1573	p.P525T	1.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	227	0	0	241	63	20.59	-	-	-	A	60230264	C	A	60230264	3	1	274	1	0	0	0	0	1	0	0	0	17683	855	30	2	1607	2	ZCCHC2	18	60230264	Missense_Mutation	SNP	C	TCGA-AN-A041-01A-11W-A050-09		60230264	17846984	19	25683										
SALL3	0	genome.wustl.edu	37	chr18	76753938	76753939	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	tcaaggcccagtttccgttcINSggggggctgctagactcgat							TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	18	76753938	76753939	-	G	INS	SALL3	ENST00000537592	human	ensembl	69_37n	1	known	frame_shift_ins	c.1947_1948	p.L651fs	0.981:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463	15	0	0	3	2	40	-	-	-	G	76753939	-	G	76753938	7	5	274	1	0	1	1	0	0	0	0	0	13898	883	31	0	1953	0	SALL3	18	76753938	Frame_Shift_Ins	INS	-	TCGA-AN-A041-01A-11W-A050-09	16523674	76753938	1323310	20	25684										
SAFB	0	genome.wustl.edu	37	chr19	5664427	5664427	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ggagagaaggttcaaggtcaAtgatgggagaacgagaagga	17	3	2	4			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	19	5664427	5664427	A	T	SNP	SAFB	ENST00000588852	human	ensembl	69_37n	1	known	missense	c.2311	p.M771L	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	86	0	0	66	22	25	-	-	-	T	5664427	A	T	5664427	3	4	274	1	0	0	0	0	1	0	0	0	13892	101	4	5	2377	5	SAFB	19	5664427	Missense_Mutation	SNP	A	TCGA-AN-A041-01A-11W-A050-09		5664427	53464556	21	25685										
TNFSF9	0	genome.wustl.edu	37	chr19	6534674	6534675	+	Frame_Shift_Ins	INS	-	-	G													0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	ctggcaggcgtgtccctgacINSggggggcctgagctacaaag							TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	19	6534674	6534675	-	G	INS	TNFSF9	ENST00000245817	human	ensembl	69_37n	1	known	frame_shift_ins	c.362_363	p.L124fs	0.004:0.000	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF9	HGNC	ENSG00000125657	18	0	0	13	5	27.78	-	-	-	G	6534675	-	G	6534674	7	5	274	1	0	1	1	0	0	0	0	0	16407	536	19	0	372	0	TNFSF9	19	6534674	Frame_Shift_Ins	INS	-	TCGA-AN-A041-01A-11W-A050-09	870247	6534674	52594309	22	25686										
NCOA6	0	genome.wustl.edu	37	chr20	33345587	33345587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999962424367031	0.595161290322581	0	0.743951612903226	1	1	0	aggttgaagggctccagaagGcagctggttccagcctggag	16	9	0	2			TCGA-AN-A041-01A-11W-A050-09	TCGA-AN-A041-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f18c7389-6c8d-485f-a7f7-a450a42e3719	69c06be5-4545-42b9-85ea-dbb7e260ae00	20	33345587	33345587	G	C	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.964	p.P322A	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	461	0	0	359	195	35.2	-	-	-	C	33345587	G	C	33345587	3	2	274	1	0	0	0	0	1	0	0	0	10305	1203	42	4	5263	4	NCOA6	20	33345587	Missense_Mutation	SNP	G	TCGA-AN-A041-01A-11W-A050-09		33345587	29679933	23	25687										
KCNAB2	0	genome.wustl.edu	37	chr1	6142306	6142306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataatggcatcaacctcttcGatacagcagaagtctacgca	7	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	6142306	6142306	G	A	SNP	KCNAB2	ENST00000378083	human	ensembl	69_37n	1	known	missense	c.352	p.D118N	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB2	HGNC	ENSG00000069424	140	0	0	43	25	36.76	-	-	-	A	6142306	G	A	6142306	3	1	275	1	0	0	0	0	1	0	0	0	8064	1058	37	1	271	1	KCNAB2	1	6142306	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		6142306	243108315	1	25688										
CHD5	0	genome.wustl.edu	37	chr1	6191787	6191787	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtactccaggaagtcctccaGgaggtccagcatcttggtca	11	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	6191787	6191787	G	T	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.3166	p.L1056M	0.995	smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	60	0	0	22	5	18.52	-	-	-	T	6191787	G	T	6191787	3	4	275	1	0	0	0	0	1	0	0	0	3357	991	35	4	2782	4	CHD5	1	6191787	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49481	6191787	243058834	2	25689										
CAMTA1	0	genome.wustl.edu	37	chr1	6885184	6885184	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagcaatagtagtcatgtaAaaatctttttaccgaaaaag	6	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	6885184	6885184	A	C	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.148	p.K50Q	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	288	0	0	187	33	15	-	-	-	C	6885184	A	C	6885184	3	2	275	1	0	0	0	0	1	0	0	0	2638	15	1	5	158	5	CAMTA1	1	6885184	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	693397	6885184	242365437	3	25690										
PER3	0	genome.wustl.edu	37	chr1	7869050	7869050	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaacaaatttacaaacttCtcttacaggtaaggtgagat	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	7869050	7869050	C	T	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.1231	p.L411F	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	86	0	0	48	10	17.24	-	-	-	T	7869050	C	T	7869050	3	4	275	1	0	0	0	0	1	0	0	0	11804	913	32	2	1269	2	PER3	1	7869050	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	983866	7869050	241381571	4	25691										
PER3	0	genome.wustl.edu	37	chr1	7887271	7887271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccgccagacagcagcagctCgaacaccggctctggtcccc	11	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	7887271	7887271	C	T	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.2258	p.S753L	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	24	0	0	7	6	46.15	-	-	-	T	7887271	C	T	7887271	3	4	275	1	0	0	0	0	1	0	0	0	11804	893	31	1	2324	1	PER3	1	7887271	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18221	7887271	241363350	5	25692										
PER3	0	genome.wustl.edu	37	chr1	7887792	7887792	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcagctcacccttgcagTtaaacttacttcaggaagag	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	7887792	7887792	T	G	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.2779	p.L927V	0.808	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	69	0	0	29	4	12.12	-	-	-	G	7887792	T	G	7887792	3	3	275	1	0	0	0	0	1	0	0	0	11804	1722	60	5	2845	5	PER3	1	7887792	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	521	7887792	241362829	6	25693										
RERE	0	genome.wustl.edu	37	chr1	8421454	8421454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtgctgcgattgtcctggtCgatgtctttggggtcactgc	14	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	8421454	8421454	C	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.2113	p.D705N	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	130	0	0	93	17	15.45	-	-	-	T	8421454	C	T	8421454	3	4	275	1	0	0	0	0	1	0	0	0	13314	884	31	1	2611	1	RERE	1	8421454	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	533662	8421454	240829167	7	25694										
CTNNBIP1	0	genome.wustl.edu	37	chr1	9910782	9910782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagggctttgcagctactgCctccggtcttccgtctccga	10	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	9910782	9910782	C	T	SNP	CTNNBIP1	ENST00000377256	human	ensembl	69_37n	-1	known	silent	c.240	p.R80	1.000	pfam_ICAT	pfam_ICAT,superfamily_ICAT	-	no_errors	CTNNBIP1	HGNC	ENSG00000178585	69	0	0	23	4	14.29	-	-	-	T	9910782	C	T	9910782	2	4	275	1	0	0	0	0	0	0	0	1	4049	738	26	4		4	CTNNBIP1	1	9910782	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1489328	9910782	239339839	8	25695										
UBE4B	0	genome.wustl.edu	37	chr1	10197233	10197233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagttgccgtcgctatatccGcagactccgggctatccggg	12	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	10197233	10197233	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.2333	p.R778H	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	232	1	0.43	107	37	25.69	-	-	-	A	10197233	G	A	10197233	3	1	275	1	0	0	0	0	1	0	0	0	16980	1087	38	1	2399	1	UBE4B	1	10197233	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	286451	10197233	239053388	9	25696										
KIF1B	0	genome.wustl.edu	37	chr1	10338079	10338079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacaaattaaatgcaatgCtgttatcaatgaggacccca	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	10338079	10338079	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.1055	p.A352V	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	312	0	0	169	26	13.33	-	-	-	T	10338079	C	T	10338079	3	4	275	1	0	0	0	0	1	0	0	0	8336	797	28	4	1097	4	KIF1B	1	10338079	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	140846	10338079	238912542	10	25697										
CASZ1	0	genome.wustl.edu	37	chr1	10719793	10719793	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtccccgtggtgatggagtCtgttttggagaaggttgact	16	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	10719793	10719793	C	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.1306	p.D436Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	127	0	0	61	20	24.69	-	-	-	A	10719793	C	A	10719793	3	1	275	1	0	0	0	0	1	0	0	0	2710	913	32	2	4041	2	CASZ1	1	10719793	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	381714	10719793	238530828	11	25698										
C1orf127	0	genome.wustl.edu	37	chr1	11017132	11017132	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtgaccgctcaccagccaTagtggcaggagctcagcaga	13	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	11017132	11017132	T	C	SNP	C1orf127	ENST00000520253	human	ensembl	69_37n	-1	putative	missense	c.659	p.Y220C	0.597	NULL	superfamily_DNA-bd_dom_put	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf127	HGNC	ENSG00000175262	79	0	0	40	7	14.89	-	-	-	C	11017132	T	C	11017132	3	2	275	1	0	0	0	0	1	0	0	0	2013	1393	49	5	1765	5	C1orf127	1	11017132	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	297339	11017132	238233489	12	25699										
MTOR	0	genome.wustl.edu	37	chr1	11273599	11273599	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaatgatcgtgctctgaaTtgaggtgttcatgacccaga	11	7	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	11273599	11273599	T	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.3142	p.I1048L	0.996	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	110	0	0	84	32	27.59	-	-	-	G	11273599	T	G	11273599	3	3	275	1	0	0	0	0	1	0	0	0	10026	1493	52	5	4659	5	MTOR	1	11273599	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	256467	11273599	237977022	13	25700										
AGTRAP	0	genome.wustl.edu	37	chr1	11806254	11806254	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgtgcactttgcaaacttCgaagtgcagcgcacagggca	11	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	11806254	11806254	C	T	SNP	AGTRAP	ENST00000452018	human	ensembl	69_37n	1	known	nonsense	c.133	p.R45*	0.000	NULL	NULL	-	no_errors	AGTRAP	HGNC	ENSG00000177674	67	0	0	35	37	50.68	-	-	-	T	11806254	C	T	11806254	4	4	275	1	0	0	0	0	0	1	0	0	403	876	31	1	143	1	AGTRAP	1	11806254	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	532655	11806254	237444367	14	25701										
TNFRSF1B	0	genome.wustl.edu	37	chr1	12266982	12266982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaggaggaatgtgcctttCggtcacagctggagacgcca	13	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	12266982	12266982	C	T	SNP	TNFRSF1B	ENST00000376259	human	ensembl	69_37n	1	known	missense	c.1291	p.R431W	0.014	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1B	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137	230	0	0	144	34	18.89	-	-	-	T	12266982	C	T	12266982	3	4	275	1	0	0	0	0	1	0	0	0	16389	875	31	1	1329	1	TNFRSF1B	1	12266982	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	460728	12266982	236983639	15	25702										
VPS13D	0	genome.wustl.edu	37	chr1	12337206	12337206	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggcatggcaaatagagaGaaatatggcagaaaaattgc	13	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	12337206	12337206	G	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.3561	p.E1187D	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	77	0	0	47	7	12.96	-	-	-	T	12337206	G	T	12337206	3	4	275	1	0	0	0	0	1	0	0	0	17289	933	33	2	3631	2	VPS13D	1	12337206	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70224	12337206	236913415	16	25703										
VPS13D	0	genome.wustl.edu	37	chr1	12337943	12337943	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggacattaaactgtattCtttgaattgcacccagttgg	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	12337943	12337943	C	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.4298	p.S1433Y	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	198	0	0	75	41	35.34	-	-	-	A	12337943	C	A	12337943	3	1	275	1	0	0	0	0	1	0	0	0	17289	913	32	2	4368	2	VPS13D	1	12337943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	737	12337943	236912678	17	25704										
VPS13D	0	genome.wustl.edu	37	chr1	12405529	12405529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagtcgggaccttttttcGatatgcagcaccagataaaa	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	12405529	12405529	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.8984	p.R2995Q	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	130	0	0	106	19	15.2	-	-	-	A	12405529	G	A	12405529	3	1	275	1	0	0	0	0	1	0	0	0	17289	1058	37	1	9150	1	VPS13D	1	12405529	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	67586	12405529	236845092	18	25705										
DHRS3	0	genome.wustl.edu	37	chr1	12640688	12640688	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctcagtccggccccagaGaacaatctggaagaagataa	9	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	12640688	12640688	G	T	SNP	DHRS3	ENST00000376223	human	ensembl	69_37n	-1	known	missense	c.202	p.L68I	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS3	HGNC	ENSG00000162496	67	0	0	26	19	42.22	-	-	-	T	12640688	G	T	12640688	3	4	275	1	0	0	0	0	1	0	0	0	4527	942	33	2	726	2	DHRS3	1	12640688	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	235159	12640688	236609933	19	25706										
DNAJC16	0	genome.wustl.edu	37	chr1	15892680	15892680	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaagaaaacagcaggtttCtctaacaaaacaccagactc	5	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	15892680	15892680	C	A	SNP	DNAJC16	ENST00000375838	human	ensembl	69_37n	1	known	missense	c.1783	p.L595I	0.000	NULL	pfam_DnaJ_N,pfam_Thioredoxin_domain,superfamily_DnaJ_N,superfamily_Thioredoxin-like_fold,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC16	HGNC	ENSG00000116138	163	0	0	104	18	14.75	-	-	-	A	15892680	C	A	15892680	3	1	275	1	0	0	0	0	1	0	0	0	4670	928	32	2		2	DNAJC16	1	15892680	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3251992	15892680	233357941	20	25707										
AGMAT	0	genome.wustl.edu	37	chr1	15901279	15901279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatacggtggtgaaacttCgacaagatcacagcccatca	8	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	15901279	15901279	C	T	SNP	AGMAT	ENST00000375826	human	ensembl	69_37n	-1	known	missense	c.958	p.E320K	1.000	pfam_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771	116	0	0	63	18	21.95	-	-	-	T	15901279	C	T	15901279	3	4	275	1	0	0	0	0	1	0	0	0	385	893	31	1	108	1	AGMAT	1	15901279	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8599	15901279	233349342	21	25708										
SPEN	0	genome.wustl.edu	37	chr1	16254645	16254645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacatattatgagagtgttcGaactccaggcacttatcctg	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	16254645	16254645	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.1910	p.R637Q	0.996	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	107	0	0	81	9	10	-	-	-	A	16254645	G	A	16254645	3	1	275	1	0	0	0	0	1	0	0	0	15129	1058	37	1	1952	1	SPEN	1	16254645	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	353366	16254645	232995976	22	25709										
SPEN	0	genome.wustl.edu	37	chr1	16257359	16257359	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttgaacaagattccaagCgattgcagcatctagagaga	9	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	16257359	16257359	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.4624	p.R1542*	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	377	0	0	233	66	22	-	-	-	T	16257359	C	T	16257359	4	4	275	1	0	0	0	0	0	1	0	0	15129	760	27	1	4666	1	SPEN	1	16257359	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2714	16257359	232993262	23	25710										
SPATA21	0	genome.wustl.edu	37	chr1	16730261	16730261	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctctggtaaggccagcAtctctaccagcagggacagg	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	16730261	16730261	A	G	SNP	SPATA21	ENST00000335496	human	ensembl	69_37n	-1	known	missense	c.962	p.M321T	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SPATA21	HGNC	ENSG00000187144	109	0	0	51	11	17.74	-	-	-	G	16730261	A	G	16730261	3	3	275	1	0	0	0	0	1	0	0	0	15098	217	8	5	463	5	SPATA21	1	16730261	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	472902	16730261	232520360	24	25711										
SDHB	0	genome.wustl.edu	37	chr1	17354230	17354230	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcagattgaaacaataaaTagggactaatgaccagtttc	7	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	17354230	17354230	T	C	SNP	SDHB	ENST00000475506	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDHB	HGNC	ENSG00000117118	199	0	0	150	22	12.72	-	-	-	C	17354230	T	C	17354230	1	2	275	0	1	0	0	0	0	0	0	0	14053	1421	49	5		5	SDHB	1	17354230	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	623969	17354230	231896391	25	25712										
PADI1	0	genome.wustl.edu	37	chr1	17548864	17548864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatggtctacaaccgcacaCgtgtgaaagagcccataggc	10	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	17548864	17548864	C	T	SNP	PADI1	ENST00000375471	human	ensembl	69_37n	1	known	missense	c.172	p.R58C	0.000	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623	362	1	0.27	247	36	12.68	-	-	-	T	17548864	C	T	17548864	3	4	275	1	0	0	0	0	1	0	0	0	11450	536	19	1	178	1	PADI1	1	17548864	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	194634	17548864	231701757	26	25713										
UBR4	0	genome.wustl.edu	37	chr1	19479819	19479819	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtagctgttttgcgctttcGaacaggcttcatgatgctga	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	19479819	19479819	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	nonsense	c.6808	p.R2270*	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	163	0	0	100	20	16.67	-	-	-	A	19479819	G	A	19479819	4	1	275	1	0	0	0	0	0	1	0	0	17001	1066	37	1	8987	1	UBR4	1	19479819	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1930955	19479819	229770802	27	25714										
UBR4	0	genome.wustl.edu	37	chr1	19491457	19491457	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgtgccagggagccacaGagatgcaacaggctcgggtt	15	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	19491457	19491457	G	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.4347	p.L1449	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	116	1	0.85	84	16	16	-	-	-	T	19491457	G	T	19491457	2	4	275	1	0	0	0	0	0	0	0	1	17001	929	33	2		2	UBR4	1	19491457	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11638	19491457	229759164	28	25715										
UBR4	0	genome.wustl.edu	37	chr1	19504042	19504042	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagccaagataagcggcacGaagcgcatctgagcatccat	11	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	19504042	19504042	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.2550	p.F850	0.150	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	226	0	0	142	29	16.96	-	-	-	A	19504042	G	A	19504042	2	1	275	1	0	0	0	0	0	0	0	1	17001	1049	37	1		1	UBR4	1	19504042	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12585	19504042	229746579	29	25716										
PQLC2	0	genome.wustl.edu	37	chr1	19653755	19653755	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacccaggggatctcctactCtctgttcgcgctggtgatgc	11	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	19653755	19653755	C	A	SNP	PQLC2	ENST00000375153	human	ensembl	69_37n	1	known	missense	c.653	p.S218Y	0.972	smart_CTNS	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487	47	0	0	25	6	19.35	-	-	-	A	19653755	C	A	19653755	3	1	275	1	0	0	0	0	1	0	0	0	12496	913	32	2	675	2	PQLC2	1	19653755	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	149713	19653755	229596866	30	25717										
OTUD3	0	genome.wustl.edu	37	chr1	20220921	20220921	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaattgtagcctttgcaaGaaatcatcagttgaatgtag	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	20220921	20220921	G	T	SNP	OTUD3	ENST00000375120	human	ensembl	69_37n	1	known	missense	c.431	p.R144I	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD3	HGNC	ENSG00000169914	355	0	0	252	36	12.5	-	-	-	T	20220921	G	T	20220921	3	4	275	1	0	0	0	0	1	0	0	0	11386	942	33	2	441	2	OTUD3	1	20220921	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	567166	20220921	229029700	31	25718										
OTUD3	0	genome.wustl.edu	37	chr1	20224047	20224047	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacagattcgtggtacagaGaaaagcagcgtgagggagtt	14	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	20224047	20224047	G	A	SNP	OTUD3	ENST00000375120	human	ensembl	69_37n	1	known	silent	c.498	p.E166	0.901	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD3	HGNC	ENSG00000169914	236	0	0	154	26	14.44	-	-	-	A	20224047	G	A	20224047	2	1	275	1	0	0	0	0	0	0	0	1	11386	933	33	2		2	OTUD3	1	20224047	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3126	20224047	229026574	32	25719										
KIF17	0	genome.wustl.edu	37	chr1	20998630	20998630	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggatggtggccaagtaatcGatcttctccagctgaaactc	10	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	20998630	20998630	G	A	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	silent	c.2523	p.I841	0.930	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	117	0	0	81	18	18.18	-	-	-	A	20998630	G	A	20998630	2	1	275	1	0	0	0	0	0	0	0	1	8331	1048	37	1		1	KIF17	1	20998630	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	774583	20998630	228251991	33	25720										
KIF17	0	genome.wustl.edu	37	chr1	21014186	21014186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcggacacagaggtttcttCgagcgaggatgactcactgg	13	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	21014186	21014186	C	T	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.1633	p.E545K	0.001	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	91	0	0	41	12	22.64	-	-	-	T	21014186	C	T	21014186	3	4	275	1	0	0	0	0	1	0	0	0	8331	893	31	1	1488	1	KIF17	1	21014186	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15556	21014186	228236435	34	25721										
ECE1	0	genome.wustl.edu	37	chr1	21548268	21548268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcccaggaagaagagctggTtattggtgaggcccagggtg	17	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	21548268	21548268	T	C	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.2108	p.N703S	0.996	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	333	0	0	200	27	11.89	-	-	-	C	21548268	T	C	21548268	3	2	275	1	0	0	0	0	1	0	0	0	4924	1725	60	5	212	5	ECE1	1	21548268	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	534082	21548268	227702353	35	25722										
NBPF3	0	genome.wustl.edu	37	chr1	21804636	21804636	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtcctgcctggctcatcaGgaatctgcaggagtctgaag	12	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	21804636	21804636	G	A	SNP	NBPF3	ENST00000318249	human	ensembl	69_37n	1	known	splice_site	c.993-1	e8-1	0.000	-	-	-	no_errors	NBPF3	HGNC	ENSG00000142794	349	0	0	224	40	15.15	-	-	-	A	21804636	G	A	21804636	5	1	275	1	0	0	0	0	0	0	1	0	10269	1014	35	4	1022	4	NBPF3	1	21804636	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	256368	21804636	227445985	36	25723										
ALPL	0	genome.wustl.edu	37	chr1	21902414	21902414	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccccgtggcaactctatcTttggtaggtgggccttcttt	10	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	21902414	21902414	T	C	SNP	ALPL	ENST00000374832	human	ensembl	69_37n	1	known	missense	c.1186	p.F396L	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551	80	0	0	62	11	15.07	-	-	-	C	21902414	T	C	21902414	3	2	275	1	0	0	0	0	1	0	0	0	547	1609	56	5	1220	5	ALPL	1	21902414	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	97778	21902414	227348207	37	25724										
USP48	0	genome.wustl.edu	37	chr1	22021687	22021687	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatataattttgatgggataTcttttgccgctttgttccac	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	22021687	22021687	T	C	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	missense	c.2755	p.I919V	0.960	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	391	0	0	247	55	18.21	-	-	-	C	22021687	T	C	22021687	3	2	275	1	0	0	0	0	1	0	0	0	17176	1435	50	5	372	5	USP48	1	22021687	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	119273	22021687	227228934	38	25725										
USP48	0	genome.wustl.edu	37	chr1	22073596	22073596	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggctccatatccaaaatttCtgagaagccaatgtaggtat	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	22073596	22073596	C	A	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	nonsense	c.955	p.E319*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	551	0	0	340	62	15.42	-	-	-	A	22073596	C	A	22073596	4	1	275	1	0	0	0	0	0	1	0	0	17176	922	32	2	2240	2	USP48	1	22073596	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	51909	22073596	227177025	39	25726										
USP48	0	genome.wustl.edu	37	chr1	22084134	22084134	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaacagcatatagcaatCgcttaaaaaatgatggttta	6	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	22084134	22084134	C	T	SNP	USP48	ENST00000489108	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	USP48	HGNC	ENSG00000090686	126	0	0	64	8	11.11	-	-	-	T	22084134	C	T	22084134	1	4	275	0	1	0	0	0	0	0	0	0	17176	899	31	1		1	USP48	1	22084134	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10538	22084134	227166487	40	25727										
KDM1A	0	genome.wustl.edu	37	chr1	23381583	23381583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatactgtgcttgtccaccGagttcacagttatttagagc	9	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	23381583	23381583	G	A	SNP	KDM1A	ENST00000542151	human	ensembl	69_37n	1	known	missense	c.812	p.R271Q	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487	212	0	0	153	24	13.48	-	-	-	A	23381583	G	A	23381583	3	1	275	1	0	0	0	0	1	0	0	0	8176	1058	37	1	834	1	KDM1A	1	23381583	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1297449	23381583	225869038	41	25728										
HNRNPR	0	genome.wustl.edu	37	chr1	23650159	23650159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgtagatcccaaatgggtcCggccttctcaaaaaggggca	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	23650159	23650159	C	T	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.565	p.G189R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	295	0	0	229	42	15.5	-	-	-	T	23650159	C	T	23650159	3	4	275	1	0	0	0	0	1	0	0	0	7323	661	23	1	1369	1	HNRNPR	1	23650159	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	268576	23650159	225600462	42	25729										
TMEM57	0	genome.wustl.edu	37	chr1	25815677	25815677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaaaggggagaatgcaccGaaaccttacggaatcggatc	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	25815677	25815677	G	A	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.1510	p.E504K	1.000	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	170	0	0	110	23	17.29	-	-	-	A	25815677	G	A	25815677	3	1	275	1	0	0	0	0	1	0	0	0	16279	1059	37	1	1544	1	TMEM57	1	25815677	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2165518	25815677	223434944	43	25730										
TMEM57	0	genome.wustl.edu	37	chr1	25817907	25817907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgatattgataggagcttCggaaatataaggaaaatgag	12	2	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	25817907	25817907	C	T	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.1624	p.R542W	1.000	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	112	0	0	69	18	20.69	-	-	-	T	25817907	C	T	25817907	3	4	275	1	0	0	0	0	1	0	0	0	16279	875	31	1	1662	1	TMEM57	1	25817907	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2230	25817907	223432714	44	25731										
TMEM57	0	genome.wustl.edu	37	chr1	25824808	25824808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctaaaacagaagatagccGaagtcatggccgtcatgccc	9	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	25824808	25824808	G	A	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.1846	p.E616K	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	228	1	0.43	147	34	18.68	-	-	-	A	25824808	G	A	25824808	3	1	275	1	0	0	0	0	1	0	0	0	16279	1059	37	1	1888	1	TMEM57	1	25824808	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6901	25824808	223425813	45	25732										
LDLRAP1	0	genome.wustl.edu	37	chr1	25880524	25880524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccaagggtgaggagctgtCggccgccgccatcaagagga	16	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	25880524	25880524	C	T	SNP	LDLRAP1	ENST00000374338	human	ensembl	69_37n	1	known	missense	c.200	p.S67L	1.000	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	LDLRAP1	HGNC	ENSG00000157978	73	0	0	25	12	31.58	-	-	-	T	25880524	C	T	25880524	3	4	275	1	0	0	0	0	1	0	0	0	8762	893	31	1	206	1	LDLRAP1	1	25880524	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	55716	25880524	223370097	46	25733										
CATSPER4	0	genome.wustl.edu	37	chr1	26527450	26527450	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcgaacctctcagaaaacAcgtgtgacaacttttgcttg	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	26527450	26527450	A	G	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	missense	c.1117	p.T373A	0.025	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	172	0	0	114	29	20.28	-	-	-	G	26527450	A	G	26527450	3	3	275	1	0	0	0	0	1	0	0	0	2715	159	6	5	1147	5	CATSPER4	1	26527450	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	646926	26527450	222723171	47	25734										
DHDDS	0	genome.wustl.edu	37	chr1	26784301	26784301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatatctctgagtctctgCttgataagtgcctctatacc	8	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	26784301	26784301	C	T	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	missense	c.562	p.L188F	1.000	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	395	0	0	315	54	14.63	-	-	-	T	26784301	C	T	26784301	3	4	275	1	0	0	0	0	1	0	0	0	4514	797	28	4	584	4	DHDDS	1	26784301	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256851	26784301	222466320	48	25735										
RPS6KA1	0	genome.wustl.edu	37	chr1	26882031	26882031	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgggggctgtttcagggcGaagctaggcatgccccagtt	15	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	26882031	26882031	G	A	SNP	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	silent	c.858	p.A286	0.653	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	53	0	0	32	4	11.11	-	-	-	A	26882031	G	A	26882031	2	1	275	1	0	0	0	0	0	0	0	1	13736	1045	37	1		1	RPS6KA1	1	26882031	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	97730	26882031	222368590	49	25736										
MAP3K6	0	genome.wustl.edu	37	chr1	27682984	27682984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccttccccgccaggatttCgcgcagcctgtggggcgcag	13	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	27682984	27682984	C	T	SNP	MAP3K6	ENST00000357582	human	ensembl	69_37n	-1	known	missense	c.3532	p.E1178K	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	46	0	0	19	5	20.83	-	-	-	T	27682984	C	T	27682984	3	4	275	1	0	0	0	0	1	0	0	0	9325	893	31	1	350	1	MAP3K6	1	27682984	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	800953	27682984	221567637	50	25737										
FCN3	0	genome.wustl.edu	37	chr1	27700001	27700001	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctggcaccggagcaggttCactggatctcctgccccaga	11	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	27700001	27700001	C	A	SNP	FCN3	ENST00000270879	human	ensembl	69_37n	-1	known	silent	c.243	p.V81	0.000	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN3	HGNC	ENSG00000142748	43	0	0	30	9	23.08	-	-	-	A	27700001	C	A	27700001	2	1	275	1	0	0	0	0	0	0	0	1	5839	813	29	2		2	FCN3	1	27700001	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17017	27700001	221550620	51	25738										
WASF2	0	genome.wustl.edu	37	chr1	27744865	27744865	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtttctgtcaaaaagcttCtggtcttgaatggtggaact	11	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	27744865	27744865	C	A	SNP	WASF2	ENST00000430629	human	ensembl	69_37n	-1	known	missense	c.324	p.Q108H	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF2	HGNC	ENSG00000158195	246	0	0	183	31	14.49	-	-	-	A	27744865	C	A	27744865	3	1	275	1	0	0	0	0	1	0	0	0	17350	912	32	2	1196	2	WASF2	1	27744865	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44864	27744865	221505756	52	25739										
EYA3	0	genome.wustl.edu	37	chr1	28337448	28337448	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaggtaactaaatcagtttCttctcatacttctaattcac	4	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	28337448	28337448	C	A	SNP	EYA3	ENST00000468665	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	EYA3	HGNC	ENSG00000158161	174	0	0	114	30	20.83	-	-	-	A	28337448	C	A	28337448	1	1	275	0	1	0	0	0	0	0	0	0	5367	928	32	2		2	EYA3	1	28337448	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	592583	28337448	220913173	53	25740										
PTAFR	0	genome.wustl.edu	37	chr1	28477476	28477476	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagatgatgctgtaaacaatCgggaagagagtgtatcggaa	13	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	28477476	28477476	C	T	SNP	PTAFR	ENST00000305392	human	ensembl	69_37n	-1	known	silent	c.57	p.P19	0.003	prints_PAF_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_PAF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	PTAFR	HGNC	ENSG00000169403	156	1	0.64	103	27	20.77	-	-	-	T	28477476	C	T	28477476	2	4	275	1	0	0	0	0	0	0	0	1	12803	871	31	1		1	PTAFR	1	28477476	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	140028	28477476	220773145	54	25741										
DNAJC8	0	genome.wustl.edu	37	chr1	28541480	28541480	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttttttatttcttcatCtgtaacttcaggatctatct	3	10	7	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	28541480	28541480	C	A	SNP	DNAJC8	ENST00000263697	human	ensembl	69_37n	-1	known	missense	c.208	p.D70Y	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC8	HGNC	ENSG00000126698	92	0	0	59	13	18.06	-	-	-	A	28541480	C	A	28541480	3	1	275	1	0	0	0	0	1	0	0	0	4690	913	32	2	581	2	DNAJC8	1	28541480	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64004	28541480	220709141	55	25742										
EPB41	0	genome.wustl.edu	37	chr1	29362384	29362384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcaaacttcccagttaccGagcagctaagaaattatgga	7	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	29362384	29362384	G	A	SNP	EPB41	ENST00000343067	human	ensembl	69_37n	1	known	missense	c.1412	p.R471Q	1.000	pirsf_Band_41_protein,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	339	0	0	218	30	12.1	-	-	-	A	29362384	G	A	29362384	3	1	275	1	0	0	0	0	1	0	0	0	5188	1058	37	1	1446	1	EPB41	1	29362384	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	820904	29362384	219888237	56	25743										
PTPRU	0	genome.wustl.edu	37	chr1	29637972	29637972	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctgcatccccagggccGaagcctgagatggtctatga	12	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	29637972	29637972	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	silent	c.2892	p.P964	0.896	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	132	1	0.75	68	18	20.93	-	-	-	A	29637972	G	A	29637972	2	1	275	1	0	0	0	0	0	0	0	1	12896	1045	37	1		1	PTPRU	1	29637972	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	275588	29637972	219612649	57	25744										
PTPRU	0	genome.wustl.edu	37	chr1	29642617	29642617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacctacaaggagatgatccGcattgatcctcagagtaatt	8	10	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	29642617	29642617	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.3497	p.R1166H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	130	0	0	42	23	34.33	-	-	-	A	29642617	G	A	29642617	3	1	275	1	0	0	0	0	1	0	0	0	12896	1087	38	1	3617	1	PTPRU	1	29642617	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4645	29642617	219608004	58	25745										
TINAGL1	0	genome.wustl.edu	37	chr1	32048821	32048821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatccagacatgatcaaagCcatcaaccagggcaactatg	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32048821	32048821	C	T	SNP	TINAGL1	ENST00000271064	human	ensembl	69_37n	1	known	missense	c.446	p.A149V	1.000	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910	99	0	0	51	13	20.31	-	-	-	T	32048821	C	T	32048821	3	4	275	1	0	0	0	0	1	0	0	0	16017	739	26	4	456	4	TINAGL1	1	32048821	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2406204	32048821	217201800	59	25746										
HCRTR1	0	genome.wustl.edu	37	chr1	32085275	32085275	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcactgagtcctggctgttCggccatgccctctgcaaggt	11	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32085275	32085275	C	T	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	1	known	silent	c.342	p.F114	0.744	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	55	0	0	21	9	30	-	-	-	T	32085275	C	T	32085275	2	4	275	1	0	0	0	0	0	0	0	1	7052	883	31	1		1	HCRTR1	1	32085275	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36454	32085275	217165346	60	25747										
KPNA6	0	genome.wustl.edu	37	chr1	32620199	32620199	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcttctagagaccatggcGagcccagggaaagacaatta	10	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32620199	32620199	G	A	SNP	KPNA6	ENST00000545542	human	ensembl	69_37n	1	known	silent	c.30	p.A10	0.974	pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800	176	0	0	140	23	14.11	-	-	-	A	32620199	G	A	32620199	2	1	275	1	0	0	0	0	0	0	0	1	8487	1045	37	1		1	KPNA6	1	32620199	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	534924	32620199	216630422	61	25748										
KPNA6	0	genome.wustl.edu	37	chr1	32620312	32620312	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctccggaagcagaagcGagagcaacaagtgagttaat	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32620312	32620312	G	A	SNP	KPNA6	ENST00000545542	human	ensembl	69_37n	1	known	missense	c.143	p.R48Q	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold,pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800	226	0	0	169	36	17.56	-	-	-	A	32620312	G	A	32620312	3	1	275	1	0	0	0	0	1	0	0	0	8487	1058	37	1	134	1	KPNA6	1	32620312	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	113	32620312	216630309	62	25749										
HDAC1	0	genome.wustl.edu	37	chr1	32797314	32797314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttagaatgctgccgcacGcacctggggtccaaatgcag	11	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32797314	32797314	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	missense	c.1126	p.A376T	1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	116	0	0	63	15	18.99	-	-	-	A	32797314	G	A	32797314	3	1	275	1	0	0	0	0	1	0	0	0	7055	1087	38	1	1168	1	HDAC1	1	32797314	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	177002	32797314	216453307	63	25750										
BSDC1	0	genome.wustl.edu	37	chr1	32842065	32842065	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacccacatccacagccagGccctgttcctccaaggatgc	7	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	32842065	32842065	G	A	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	silent	c.1005	p.G335	0.044	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	143	0	0	122	16	11.51	-	-	-	A	32842065	G	A	32842065	2	1	275	1	0	0	0	0	0	0	0	1	1536	1190	42	4		4	BSDC1	1	32842065	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44751	32842065	216408556	64	25751										
ZNF362	0	genome.wustl.edu	37	chr1	33736159	33736159	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgtagaagagggaacacttGagctgggtcttgaaggatga	15	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	33736159	33736159	G	T	SNP	ZNF362	ENST00000490959	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF362	HGNC	ENSG00000160094	203	0	0	146	26	15.12	-	-	-	T	33736159	G	T	33736159	1	4	275	0	1	0	0	0	0	0	0	0	17964	1305	45	2		2	ZNF362	1	33736159	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	894094	33736159	215514462	65	25752										
ZSCAN20	0	genome.wustl.edu	37	chr1	33956699	33956699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggggtctaagtcttataAattctgggaaaaggagcact	11	5	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	33956699	33956699	A	C	SNP	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	missense	c.841	p.N281H	0.554	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	103	0	0	59	9	13.24	-	-	-	C	33956699	A	C	33956699	3	2	275	1	0	0	0	0	1	0	0	0	18324	14	1	5	859	5	ZSCAN20	1	33956699	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	220540	33956699	215293922	66	25753										
ZSCAN20	0	genome.wustl.edu	37	chr1	33960301	33960301	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatctcatcactcaccagaGaattcacacgggggaaaagc	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	33960301	33960301	G	A	SNP	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	missense	c.2357	p.R786K	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	121	0	0	69	24	25.81	-	-	-	A	33960301	G	A	33960301	3	1	275	1	0	0	0	0	1	0	0	0	18324	942	33	2	2383	2	ZSCAN20	1	33960301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3602	33960301	215290320	67	25754										
ZSCAN20	0	genome.wustl.edu	37	chr1	33960728	33960728	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcgcacccacactggagaGaagccgtataaatgtgtgga	12	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	33960728	33960728	G	T	SNP	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	missense	c.2784	p.E928D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	353	0	0	176	44	19.73	-	-	-	T	33960728	G	T	33960728	3	4	275	1	0	0	0	0	1	0	0	0	18324	933	33	2	2810	2	ZSCAN20	1	33960728	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	427	33960728	215289893	68	25755										
ZMYM6	0	genome.wustl.edu	37	chr1	35454132	35454132	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaatatggtttaattaattCttcagcaatggagaatggct	8	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	35454132	35454132	C	A	SNP	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	nonsense	c.2551	p.E851*	1.000	NULL	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	8	0	0	4	4	50	-	-	-	A	35454132	C	A	35454132	4	1	275	1	0	0	0	0	0	1	0	0	17800	922	32	2	1430	2	ZMYM6	1	35454132	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1493404	35454132	213796489	69	25756										
KIAA0319L	0	genome.wustl.edu	37	chr1	35919284	35919284	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctgcctgaggaggcttaTtgttttctggaagacaaaga	11	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	35919284	35919284	T	G	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.1787	p.N596T	1.000	superfamily_PKD_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	99	0	0	78	16	17.02	-	-	-	G	35919284	T	G	35919284	3	3	275	1	0	0	0	0	1	0	0	0	8221	1493	52	5	1402	5	KIAA0319L	1	35919284	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	465152	35919284	213331337	70	25757										
EIF2C4	0	genome.wustl.edu	37	chr1	36307244	36307244	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccagaactaatagcaattCgaaaggcatgtattagcttg	10	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	36307244	36307244	C	T	SNP	EIF2C4	ENST00000373210	human	ensembl	69_37n	1	known	nonsense	c.2068	p.R690*	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C4	HGNC	ENSG00000134698	239	0	0	130	49	27.22	-	-	-	T	36307244	C	T	36307244	4	4	275	1	0	0	0	0	0	1	0	0	5043	876	31	1	2126	1	EIF2C4	1	36307244	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	387960	36307244	212943377	71	25758										
EIF2C3	0	genome.wustl.edu	37	chr1	36479288	36479288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagtttcaatttaaagttCgggatgaaatggctcatgta	11	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	36479288	36479288	C	T	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	missense	c.1207	p.R403W	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	172	0	0	57	12	16.9	-	-	-	T	36479288	C	T	36479288	3	4	275	1	0	0	0	0	1	0	0	0	5042	875	31	1	1245	1	EIF2C3	1	36479288	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	172044	36479288	212771333	72	25759										
COL8A2	0	genome.wustl.edu	37	chr1	36563365	36563365	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggtggccggcacgttgttCttgtacagggccacccacac	12	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	36563365	36563365	C	A	SNP	COL8A2	ENST00000303143	human	ensembl	69_37n	-1	known	missense	c.1917	p.K639N	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	COL8A2	HGNC	ENSG00000171812	37	0	0	11	6	35.29	-	-	-	A	36563365	C	A	36563365	3	1	275	1	0	0	0	0	1	0	0	0	3736	912	32	2	198	2	COL8A2	1	36563365	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	84077	36563365	212687256	73	25760										
LSM10	0	genome.wustl.edu	37	chr1	36859607	36859607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcatcgacattgtctatgcGtccgtgggccacgctctcat	10	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	36859607	36859607	G	A	SNP	LSM10	ENST00000315732	human	ensembl	69_37n	-1	known	missense	c.124	p.R42C	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM10	HGNC	ENSG00000181817	105	0	0	39	13	24.53	-	-	-	A	36859607	G	A	36859607	3	1	275	1	0	0	0	0	1	0	0	0	9117	1145	40	1	251	1	LSM10	1	36859607	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	296242	36859607	212391014	74	25761										
MTF1	0	genome.wustl.edu	37	chr1	38301355	38301355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaactcaccagtatgtgtacGaacgtgagttttaaggtggt	11	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	38301355	38301355	G	A	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.841	p.R281C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	325	0	0	231	31	11.74	-	-	-	A	38301355	G	A	38301355	3	1	275	1	0	0	0	0	1	0	0	0	9994	1058	37	1	1448	1	MTF1	1	38301355	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1441748	38301355	210949266	75	25762										
MTF1	0	genome.wustl.edu	37	chr1	38304324	38304324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttttcccctgtatgagttCgaatgtgcttcctcagatca	8	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	38304324	38304324	C	T	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.752	p.R251Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	319	0	0	190	71	27.2	-	-	-	T	38304324	C	T	38304324	3	4	275	1	0	0	0	0	1	0	0	0	9994	884	31	1	1541	1	MTF1	1	38304324	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2969	38304324	210946297	76	25763										
INPP5B	0	genome.wustl.edu	37	chr1	38411998	38411998	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgctggcccctgctgagcGcacacaccctgtgggagggg	15	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	38411998	38411998	G	A	SNP	INPP5B	ENST00000491406	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INPP5B	HGNC	ENSG00000204084	44	0	0	30	8	21.05	-	-	-	A	38411998	G	A	38411998	1	1	275	0	1	0	0	0	0	0	0	0	7809	1102	38	1		1	INPP5B	1	38411998	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	107674	38411998	210838623	77	25764										
UTP11L	0	genome.wustl.edu	37	chr1	38482041	38482041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcttctagcctggctttcGaaaacatctgggcctgctgg	11	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	38482041	38482041	G	A	SNP	UTP11L	ENST00000373014	human	ensembl	69_37n	1	known	missense	c.74	p.R25Q	1.000	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	-	no_errors	UTP11L	HGNC	ENSG00000183520	198	1	0.5	178	34	15.96	-	-	-	A	38482041	G	A	38482041	3	1	275	1	0	0	0	0	1	0	0	0	17191	1058	37	1	80	1	UTP11L	1	38482041	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70043	38482041	210768580	78	25765										
MACF1	0	genome.wustl.edu	37	chr1	39812688	39812688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaaaggaaagctcagctgGatgctcttgcttttgatatt	10	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39812688	39812688	G	A	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.10732	p.D3578N	1.000	superfamily_RNaseH-like_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	333	0	0	180	62	25.62	-	-	-	A	39812688	G	A	39812688	3	1	275	1	0	0	0	0	1	0	0	0	9211	1174	41	2	10728	2	MACF1	1	39812688	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1330647	39812688	209437933	79	25766										
MACF1	0	genome.wustl.edu	37	chr1	39812755	39812755	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacttgtcccctcagcagaAtcgacagatgctgaggcttc	11	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39812755	39812755	A	C	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.10799	p.N3600T	1.000	superfamily_RNaseH-like_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	278	0	0	179	27	13.11	-	-	-	C	39812755	A	C	39812755	3	2	275	1	0	0	0	0	1	0	0	0	9211	101	4	5	10795	5	MACF1	1	39812755	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	67	39812755	209437866	80	25767										
MACF1	0	genome.wustl.edu	37	chr1	39853533	39853533	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaaacagggtcactcgaaGaaatgactcagaggctcagg	11	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39853533	39853533	G	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	nonsense	c.8833	p.E2945*	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	80	0	0	71	16	18.39	-	-	-	T	39853533	G	T	39853533	4	4	275	1	0	0	0	0	0	1	0	0	9211	943	33	2	15194	2	MACF1	1	39853533	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40778	39853533	209397088	81	25768										
KIAA0754	0	genome.wustl.edu	37	chr1	39878273	39878273	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatccagatggagtggaaaCtgtgaatgatacaaagcctg	11	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39878273	39878273	C	A	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.1928	p.T643N	0.844	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	153	0	0	111	26	18.98	-	-	-	A	39878273	C	A	39878273	3	1	275	1	0	0	0	0	1	0	0	0	8244	565	20	4	2338	4	KIAA0754	1	39878273	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24740	39878273	209372348	82	25769										
MACF1	0	genome.wustl.edu	37	chr1	39913781	39913781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggactcagaactagagatatCcaatgacccagacaaaatta	7	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39913781	39913781	C	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.13868	p.S4623F	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	257	0	0	164	24	12.7	-	-	-	T	39913781	C	T	39913781	3	4	275	1	0	0	0	0	1	0	0	0	9211	855	30	2	20333	2	MACF1	1	39913781	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35508	39913781	209336840	83	25770										
MACF1	0	genome.wustl.edu	37	chr1	39914343	39914343	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcagagcactgaaagaaaaGactttgcttcccgaagatag	11	8	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	39914343	39914343	G	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.13989	p.K4663N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	284	0	0	181	45	19.91	-	-	-	T	39914343	G	T	39914343	3	4	275	1	0	0	0	0	1	0	0	0	9211	933	33	2	20458	2	MACF1	1	39914343	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	562	39914343	209336278	84	25771										
TRIT1	0	genome.wustl.edu	37	chr1	40313767	40313767	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttatccaagcgctcatctaGaacttgaatcaaattagccc	5	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	40313767	40313767	G	T	SNP	TRIT1	ENST00000316891	human	ensembl	69_37n	-1	known	missense	c.706	p.L236I	1.000	pfam_IPPT,tigrfam_tRNA_delta_PyrP_Trfase	pfam_IPPT,pfam_Isopentenyl_transferase,pfam_Znf_C2H2_jaz,smart_Znf_U1,tigrfam_tRNA_delta_PyrP_Trfase	-	no_errors	TRIT1	HGNC	ENSG00000043514	275	0	0	184	46	20	-	-	-	T	40313767	G	T	40313767	3	4	275	1	0	0	0	0	1	0	0	0	16656	933	33	2	721	2	TRIT1	1	40313767	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	399424	40313767	208936854	85	25772										
RLF	0	genome.wustl.edu	37	chr1	40702532	40702532	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagaagtgtacttactgtCgacgacattttatgtctgct	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	40702532	40702532	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	nonsense	c.2158	p.R720*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	128	0	0	96	24	20	-	-	-	T	40702532	C	T	40702532	4	4	275	1	0	0	0	0	0	1	0	0	13475	876	31	1	2188	1	RLF	1	40702532	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	388765	40702532	208548089	86	25773										
RLF	0	genome.wustl.edu	37	chr1	40702682	40702682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaaaagcatgacgatctgCgttacaaatgtgaattaaat	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	40702682	40702682	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.2308	p.R770C	0.985	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	95	0	0	78	25	24.04	-	-	-	T	40702682	C	T	40702682	3	4	275	1	0	0	0	0	1	0	0	0	13475	768	27	1	2338	1	RLF	1	40702682	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	150	40702682	208547939	87	25774										
ZNF643	0	genome.wustl.edu	37	chr1	40928972	40928972	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacctaactcaacaccagaGaactcatactggagaaagac	6	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	40928972	40928972	G	T	SNP	ZNF643	ENST00000411995	human	ensembl	69_37n	1	known	missense	c.1316	p.R439I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF643	HGNC	ENSG00000187801	334	0	0	203	81	28.52	-	-	-	T	40928972	G	T	40928972	3	4	275	1	0	0	0	0	1	0	0	0	18155	942	33	2	1334	2	ZNF643	1	40928972	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	226290	40928972	208321649	88	25775										
KCNQ4	0	genome.wustl.edu	37	chr1	41304029	41304029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgctgttgggcttctattCgcgctgcctgcgctctggca	12	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	41304029	41304029	C	T	SNP	KCNQ4	ENST00000347132	human	ensembl	69_37n	1	known	missense	c.1922	p.S641L	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013	74	0	0	26	8	23.53	-	-	-	T	41304029	C	T	41304029	3	4	275	1	0	0	0	0	1	0	0	0	8139	893	31	1	1976	1	KCNQ4	1	41304029	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	375057	41304029	207946592	89	25776										
SLFNL1	0	genome.wustl.edu	37	chr1	41483468	41483468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggatgccctgcaccaggcCgctgtcctctactcccacga	10	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	41483468	41483468	C	T	SNP	SLFNL1	ENST00000302946	human	ensembl	69_37n	-1	known	missense	c.796	p.G266S	1.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790	27	0	0	10	4	28.57	-	-	-	T	41483468	C	T	41483468	3	4	275	1	0	0	0	0	1	0	0	0	14827	652	23	1	439	1	SLFNL1	1	41483468	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	179439	41483468	207767153	90	25777										
SCMH1	0	genome.wustl.edu	37	chr1	41499667	41499667	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcatacctggggaacgatTtagtttccaaaatgattcca	7	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	41499667	41499667	T	G	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	missense	c.1702	p.N568H	0.962	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	543	0	0	518	204	28.25	-	-	-	G	41499667	T	G	41499667	3	3	275	1	0	0	0	0	1	0	0	0	13996	1841	64	5	292	5	SCMH1	1	41499667	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	16199	41499667	207750954	91	25778										
HIVEP3	0	genome.wustl.edu	37	chr1	41976668	41976668	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcgctgccacccccggaGaagccactgacccaggctgc	12	17	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	41976668	41976668	G	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.6675	p.F2225L	0.919	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	31	0	0	23	8	25.81	-	-	-	T	41976668	G	T	41976668	3	4	275	1	0	0	0	0	1	0	0	0	7239	933	33	2	549	2	HIVEP3	1	41976668	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	477001	41976668	207273953	92	25779										
HIVEP3	0	genome.wustl.edu	37	chr1	42049026	42049026	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgccttggcttcacgctgtcGatctcgctggtgtccaccac	10	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	42049026	42049026	G	A	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	silent	c.1443	p.I481	0.020	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	107	0	0	45	15	25	-	-	-	A	42049026	G	A	42049026	2	1	275	1	0	0	0	0	0	0	0	1	7239	1048	37	1		1	HIVEP3	1	42049026	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72358	42049026	207201595	93	25780										
HIVEP3	0	genome.wustl.edu	37	chr1	42049505	42049505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggacagggaacagcgttCgtggctggaactgtggctcc	16	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	42049505	42049505	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.964	p.E322K	0.965	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	254	0	0	151	29	16.11	-	-	-	T	42049505	C	T	42049505	3	4	275	1	0	0	0	0	1	0	0	0	7239	893	31	1	6280	1	HIVEP3	1	42049505	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	479	42049505	207201116	94	25781										
FOXJ3	0	genome.wustl.edu	37	chr1	42654508	42654508	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaggccagtttgtgtaaaGaactgattaagagaagaaca	10	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	42654508	42654508	G	T	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.1545	p.F515L	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	145	0	0	98	25	20.33	-	-	-	T	42654508	G	T	42654508	3	4	275	1	0	0	0	0	1	0	0	0	6061	933	33	2	335	2	FOXJ3	1	42654508	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	605003	42654508	206596113	95	25782										
ZMYND12	0	genome.wustl.edu	37	chr1	42915675	42915675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgcgcagtggaatcaagaGctgacatattttctcatgga	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	42915675	42915675	G	A	SNP	ZMYND12	ENST00000372565	human	ensembl	69_37n	-1	known	missense	c.166	p.L56F	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185	166	0	0	44	32	41.56	-	-	-	A	42915675	G	A	42915675	3	1	275	1	0	0	0	0	1	0	0	0	17803	971	34	4	959	4	ZMYND12	1	42915675	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	261167	42915675	206334946	96	25783										
WDR65	0	genome.wustl.edu	37	chr1	43649466	43649466	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcctctttgaatctggaGatcagcgttgggagaccagc	11	10	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	43649466	43649466	G	T	SNP	WDR65	ENST00000528956	human	ensembl	69_37n	1	known	missense	c.679	p.D227Y	1.000	superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710	321	0	0	194	34	14.91	-	-	-	T	43649466	G	T	43649466	3	4	275	1	0	0	0	0	1	0	0	0	17413	942	33	2	689	2	WDR65	1	43649466	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	733791	43649466	205601155	97	25784										
TIE1	0	genome.wustl.edu	37	chr1	43771003	43771003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcagacagacgtgatctGgaagagcaacggtaaagagg	15	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	43771003	43771003	G	T	SNP	TIE1	ENST00000372476	human	ensembl	69_37n	1	known	missense	c.473	p.W158L	1.000	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	270	0	0	133	21	13.64	-	-	-	T	43771003	G	T	43771003	3	4	275	1	0	0	0	0	1	0	0	0	15988	1357	47	4	483	4	TIE1	1	43771003	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	121537	43771003	205479618	98	25785										
TIE1	0	genome.wustl.edu	37	chr1	43774787	43774787	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagagctacgcaagccagaCggcactgtgctcctggtcag	12	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	43774787	43774787	C	T	SNP	TIE1	ENST00000372476	human	ensembl	69_37n	1	known	silent	c.1173	p.D391	0.154	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	117	0	0	54	34	38.2	-	-	-	T	43774787	C	T	43774787	2	4	275	1	0	0	0	0	0	0	0	1	15988	535	19	1		1	TIE1	1	43774787	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3784	43774787	205475834	99	25786										
PTCH2	0	genome.wustl.edu	37	chr1	45293786	45293786	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcttgaactgtggcagtgAggtgggcaatgcccactggt	16	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	45293786	45293786	A	T	SNP	PTCH2	ENST00000372192	human	ensembl	69_37n	-1	known	missense	c.1787	p.L596H	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425	68	0	0	24	7	22.58	-	-	-	T	45293786	A	T	45293786	3	4	275	1	0	0	0	0	1	0	0	0	12811	304	11	5	1880	5	PTCH2	1	45293786	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1518999	45293786	203956835	100	25787										
TESK2	0	genome.wustl.edu	37	chr1	45887426	45887426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgggatgggagagtctattCatgagctgtacttctttcag	12	6	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	45887426	45887426	C	A	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	missense	c.315	p.M105I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	373	0	0	224	35	13.51	-	-	-	A	45887426	C	A	45887426	3	1	275	1	0	0	0	0	1	0	0	0	15863	826	29	2	1436	2	TESK2	1	45887426	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	593640	45887426	203363195	101	25788										
GPBP1L1	0	genome.wustl.edu	37	chr1	46095305	46095305	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtgaggggaaggcaattCtcatcattttcaggatattc	10	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	46095305	46095305	C	A	SNP	GPBP1L1	ENST00000290795	human	ensembl	69_37n	-1	known	missense	c.1215	p.E405D	1.000	NULL	NULL	-	no_errors	GPBP1L1	HGNC	ENSG00000159592	177	0	0	85	19	18.27	-	-	-	A	46095305	C	A	46095305	3	1	275	1	0	0	0	0	1	0	0	0	6646	912	32	2	217	2	GPBP1L1	1	46095305	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	207879	46095305	203155316	102	25789										
PIK3R3	0	genome.wustl.edu	37	chr1	46509280	46509280	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatgtagaaagaatgccctCatcgtagtctaataaaaact	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	46509280	46509280	C	A	SNP	PIK3R3	ENST00000488808	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	PIK3R3	HGNC	ENSG00000117461	329	0	0	186	31	14.29	-	-	-	A	46509280	C	A	46509280	1	1	275	0	1	0	0	0	0	0	0	0	11994	841	29	2		2	PIK3R3	1	46509280	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	413975	46509280	202741341	103	25790										
TSPAN1	0	genome.wustl.edu	37	chr1	46650308	46650308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcattgctgaggttgcaGctgctgtggtcgccttggtg	14	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	46650308	46650308	G	A	SNP	TSPAN1	ENST00000372003	human	ensembl	69_37n	1	known	missense	c.307	p.A103T	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN1	HGNC	ENSG00000117472	381	0	0	164	44	21.15	-	-	-	A	46650308	G	A	46650308	3	1	275	1	0	0	0	0	1	0	0	0	16729	971	34	4	317	4	TSPAN1	1	46650308	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	141028	46650308	202600313	104	25791										
RAD54L	0	genome.wustl.edu	37	chr1	46739837	46739837	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgtccgcctggatggcacGatgtccattaagaagcgagc	12	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	46739837	46739837	G	A	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	1	known	silent	c.1638	p.T546	0.300	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	414	0	0	256	55	17.63	-	-	-	A	46739837	G	A	46739837	2	1	275	1	0	0	0	0	0	0	0	1	13076	1045	37	1		1	RAD54L	1	46739837	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	89529	46739837	202510784	105	25792										
ATPAF1	0	genome.wustl.edu	37	chr1	47108915	47108915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagcactatgcccttttctTccttaagttcaggatagtga	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	47108915	47108915	T	C	SNP	ATPAF1	ENST00000576409	human	ensembl	69_37n	-1	known	missense	c.812	p.E271G	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472	159	0	0	102	30	22.39	-	-	-	C	47108915	T	C	47108915	3	2	275	1	0	0	0	0	1	0	0	0	1204	1783	62	5	251	5	ATPAF1	1	47108915	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	369078	47108915	202141706	106	25793										
CYP4B1	0	genome.wustl.edu	37	chr1	47283832	47283832	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctgcgcttttccactgaGaatgcatccaaacgccatcc	6	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	47283832	47283832	G	A	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	silent	c.1302	p.E434	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	224	0	0	109	16	12.8	-	-	-	A	47283832	G	A	47283832	2	1	275	1	0	0	0	0	0	0	0	1	4216	933	33	2		2	CYP4B1	1	47283832	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	174917	47283832	201966789	107	25794										
FOXE3	0	genome.wustl.edu	37	chr1	47882374	47882374	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacgctcaacgactgcttCgtcaaggtgccccgcgagcc	10	17	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	47882374	47882374	C	T	SNP	FOXE3	ENST00000335071	human	ensembl	69_37n	1	known	silent	c.387	p.F129	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE3	HGNC	ENSG00000186790	95	0	0	34	6	15	-	-	-	T	47882374	C	T	47882374	2	4	275	1	0	0	0	0	0	0	0	1	6052	883	31	1		1	FOXE3	1	47882374	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	598542	47882374	201368247	108	25795										
BEND5	0	genome.wustl.edu	37	chr1	49193586	49193586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattgtattttgcttcccttCgttcttcatttttacaggat	5	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	49193586	49193586	C	T	SNP	BEND5	ENST00000371833	human	ensembl	69_37n	-1	known	missense	c.1238	p.R413Q	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	484	0	0	302	58	16.11	-	-	-	T	49193586	C	T	49193586	3	4	275	1	0	0	0	0	1	0	0	0	1405	884	31	1	31	1	BEND5	1	49193586	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1311212	49193586	200057035	109	25796										
ELAVL4	0	genome.wustl.edu	37	chr1	50666727	50666727	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaacaagtgcaagggattCggctttgtcaccatgaccaa	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	50666727	50666727	C	T	SNP	ELAVL4	ENST00000371821	human	ensembl	69_37n	1	known	silent	c.1035	p.F345	0.980	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL4	HGNC	ENSG00000162374	115	0	0	42	19	31.15	-	-	-	T	50666727	C	T	50666727	2	4	275	1	0	0	0	0	0	0	0	1	5089	883	31	1		1	ELAVL4	1	50666727	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1473141	50666727	198583894	110	25797										
FAF1	0	genome.wustl.edu	37	chr1	51253875	51253875	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatggtctcacctccatatTcactaaaatgttgacataaa	5	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	51253875	51253875	T	G	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	missense	c.164	p.E55A	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	387	0	0	204	41	16.73	-	-	-	G	51253875	T	G	51253875	3	3	275	1	0	0	0	0	1	0	0	0	5409	1783	62	5	1852	5	FAF1	1	51253875	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	587148	51253875	197996746	111	25798										
OSBPL9	0	genome.wustl.edu	37	chr1	52250249	52250249	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcacagaattactgccgaGattttgtaggtattttttct	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	52250249	52250249	G	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	1	known	missense	c.1878	p.E626D	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	735	1	0.14	476	71	12.98	-	-	-	T	52250249	G	T	52250249	3	4	275	1	0	0	0	0	1	0	0	0	11357	933	33	2	2006	2	OSBPL9	1	52250249	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	996374	52250249	197000372	112	25799										
NRD1	0	genome.wustl.edu	37	chr1	52257736	52257736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccaagggtctgcttggttCgaaggaagtcaaaacaaggt	12	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	52257736	52257736	C	T	SNP	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	missense	c.3062	p.R1021Q	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	NRD1	HGNC	ENSG00000078618	262	0	0	118	17	12.59	-	-	-	T	52257736	C	T	52257736	3	4	275	1	0	0	0	0	1	0	0	0	10718	884	31	1	621	1	NRD1	1	52257736	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7487	52257736	196992885	113	25800										
ZCCHC11	0	genome.wustl.edu	37	chr1	52926879	52926879	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcataagtagctagcattCttgtgttatgttgagcctga	10	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	52926879	52926879	C	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	missense	c.3248	p.R1083I	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	504	0	0	264	61	18.77	-	-	-	A	52926879	C	A	52926879	3	1	275	1	0	0	0	0	1	0	0	0	17676	913	32	2	1737	2	ZCCHC11	1	52926879	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	669143	52926879	196323742	114	25801										
ZCCHC11	0	genome.wustl.edu	37	chr1	52943419	52943419	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaggccagtttttattttCtcttgttaaaatatcttgta	5	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	52943419	52943419	C	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	nonsense	c.1984	p.E662*	1.000	pfam_PAP_assoc	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	344	0	0	275	36	11.58	-	-	-	A	52943419	C	A	52943419	4	1	275	1	0	0	0	0	0	1	0	0	17676	922	32	2	3029	2	ZCCHC11	1	52943419	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16540	52943419	196307202	115	25802										
ZYG11B	0	genome.wustl.edu	37	chr1	53267547	53267547	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattcagtggacactacattGaaatttactttgagtgcact	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	53267547	53267547	G	T	SNP	ZYG11B	ENST00000294353	human	ensembl	69_37n	1	known	missense	c.1542	p.L514F	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378	240	1	0.41	129	16	11.03	-	-	-	T	53267547	G	T	53267547	3	4	275	1	0	0	0	0	1	0	0	0	18344	1281	45	2	1576	2	ZYG11B	1	53267547	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	324128	53267547	195983074	116	25803										
TMEM48	0	genome.wustl.edu	37	chr1	54252911	54252911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctatcctctgtaaatgatgCtgctactaagtgcgacagac	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	54252911	54252911	C	T	SNP	TMEM48	ENST00000371429	human	ensembl	69_37n	-1	known	missense	c.1720	p.A574T	1.000	pfam_Nucleoporin_prot_Ndc1/Nup	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	TMEM48	HGNC	ENSG00000058804	358	0	0	204	38	15.7	-	-	-	T	54252911	C	T	54252911	3	4	275	1	0	0	0	0	1	0	0	0	16267	797	28	4	316	4	TMEM48	1	54252911	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	985364	54252911	194997710	117	25804										
YIPF1	0	genome.wustl.edu	37	chr1	54348837	54348837	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactcatcatcttcttctctTcctgagcctcttggggatcc	6	14	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	54348837	54348837	T	C	SNP	YIPF1	ENST00000539954	human	ensembl	69_37n	-1	known	silent	c.219	p.G73	0.986	superfamily_Ribonuclease/ribotoxin	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799	313	1	0.32	157	47	23.04	-	-	-	C	54348837	T	C	54348837	2	2	275	1	0	0	0	0	0	0	0	1	17574	1770	62	5		5	YIPF1	1	54348837	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	95926	54348837	194901784	118	25805										
LDLRAD1	0	genome.wustl.edu	37	chr1	54477926	54477926	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcacaagaagcctgtcctgTttgtcagtgttatacaagct	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	54477926	54477926	T	C	SNP	LDLRAD1	ENST00000371360	human	ensembl	69_37n	-1	known	missense	c.230	p.N77S	0.990	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985	165	0	0	87	15	14.71	-	-	-	C	54477926	T	C	54477926	3	2	275	1	0	0	0	0	1	0	0	0	8759	1725	60	5	399	5	LDLRAD1	1	54477926	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	129089	54477926	194772695	119	25806										
C1orf168	0	genome.wustl.edu	37	chr1	57185885	57185885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatatcactagattttgttCggtggtatcaatgacttcca	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	57185885	57185885	C	T	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	missense	c.2092	p.E698K	0.902	superfamily_SH3_domain	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	222	0	0	134	25	15.72	-	-	-	T	57185885	C	T	57185885	3	4	275	1	0	0	0	0	1	0	0	0	2031	893	31	1	106	1	C1orf168	1	57185885	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2707959	57185885	192064736	120	25807										
C8A	0	genome.wustl.edu	37	chr1	57340731	57340731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaacttgtgtaaggcaagCacagtgtggacaggatttcc	11	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	57340731	57340731	C	T	SNP	C8A	ENST00000361249	human	ensembl	69_37n	1	known	missense	c.281	p.A94V	0.000	superfamily_LDrepeatLR_classA_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131	268	0	0	108	16	12.8	-	-	-	T	57340731	C	T	57340731	3	4	275	1	0	0	0	0	1	0	0	0	2439	710	25	4	291	4	C8A	1	57340731	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	154846	57340731	191909890	121	25808										
C8A	0	genome.wustl.edu	37	chr1	57351723	57351723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttccagatcagtacaatTatggcatgtatgccaagttc	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	57351723	57351723	T	C	SNP	C8A	ENST00000361249	human	ensembl	69_37n	1	known	missense	c.979	p.Y327H	1.000	pfam_MACPF,smart_MACPF,prints_MAC_perforin	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131	287	0	0	119	69	36.51	-	-	-	C	57351723	T	C	57351723	3	2	275	1	0	0	0	0	1	0	0	0	2439	1754	61	5	1005	5	C8A	1	57351723	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	10992	57351723	191898898	122	25809										
C8A	0	genome.wustl.edu	37	chr1	57378102	57378102	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctatccacgaggtgctgcgGcacacaagcctggggcctct	12	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	57378102	57378102	G	A	SNP	C8A	ENST00000361249	human	ensembl	69_37n	1	known	silent	c.1407	p.R469	0.000	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131	58	0	0	19	14	42.42	-	-	-	A	57378102	G	A	57378102	2	1	275	1	0	0	0	0	0	0	0	1	2439	1190	42	4		4	C8A	1	57378102	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26379	57378102	191872519	123	25810										
HOOK1	0	genome.wustl.edu	37	chr1	60336666	60336666	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattattctatctttagtaaTttggggtaatttctgggatt	8	3	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	60336666	60336666	T	C	SNP	HOOK1	ENST00000491135	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HOOK1	HGNC	ENSG00000134709	127	1	0.78	62	14	18.42	-	-	-	C	60336666	T	C	60336666	1	2	275	0	1	0	0	0	0	0	0	0	7333	1508	52	5		5	HOOK1	1	60336666	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2958564	60336666	188913955	124	25811										
NFIA	0	genome.wustl.edu	37	chr1	61554154	61554154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcgaagaattgactgcctcCgccaggcagataaagtctgg	12	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	61554154	61554154	C	T	SNP	NFIA	ENST00000371189	human	ensembl	69_37n	1	known	missense	c.496	p.R166C	1.000	pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599	106	0	0	61	8	11.59	-	-	-	T	61554154	C	T	61554154	3	4	275	1	0	0	0	0	1	0	0	0	10442	652	23	1	513	1	NFIA	1	61554154	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1217488	61554154	187696467	125	25812										
INADL	0	genome.wustl.edu	37	chr1	62593777	62593777	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcttaaagtaaacgagaGaactggttgaaagactaaca	10	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	62593777	62593777	G	T	SNP	INADL	ENST00000472512	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INADL	HGNC	ENSG00000132849	97	0	0	82	11	11.83	-	-	-	T	62593777	G	T	62593777	1	4	275	0	1	0	0	0	0	0	0	0	7785	957	33	2		2	INADL	1	62593777	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1039623	62593777	186656844	126	25813										
L1TD1	0	genome.wustl.edu	37	chr1	62676790	62676790	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcttctagagagagaagaGaaattacctaccaaggaaca	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	62676790	62676790	G	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	nonsense	c.2344	p.E782*	0.004	pfam_Transposase_22	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	69	0	0	56	14	20	-	-	-	T	62676790	G	T	62676790	4	4	275	1	0	0	0	0	0	1	0	0	8643	943	33	2	2350	2	L1TD1	1	62676790	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83013	62676790	186573831	127	25814										
DOCK7	0	genome.wustl.edu	37	chr1	62962169	62962169	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttaaccctggcaaagttCtgtaacagagaaattgtcca	7	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	62962169	62962169	C	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	splice_site	c.4738-1	e38-1	1.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	238	0	0	175	22	11.17	-	-	-	A	62962169	C	A	62962169	5	1	275	1	0	0	0	0	0	0	1	0	4727	927	32	2	1710	2	DOCK7	1	62962169	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	285379	62962169	186288452	128	25815										
ANGPTL3	0	genome.wustl.edu	37	chr1	63063490	63063490	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatcagtctttttatgatCtatcgctgcaaaccagtgaa	7	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	63063490	63063490	C	A	SNP	ANGPTL3	ENST00000371129	human	ensembl	69_37n	1	known	missense	c.253	p.L85I	0.849	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	169	0	0	96	20	17.24	-	-	-	A	63063490	C	A	63063490	3	1	275	1	0	0	0	0	1	0	0	0	615	912	32	2	255	2	ANGPTL3	1	63063490	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101321	63063490	186187131	129	25816										
ANGPTL3	0	genome.wustl.edu	37	chr1	63066746	63066746	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaacagatttatattcttTtatcagctcagaaggactag	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	63066746	63066746	T	G	SNP	ANGPTL3	ENST00000482591	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.923	-	-	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	104	0	0	43	9	17.31	-	-	-	G	63066746	T	G	63066746	1	3	275	0	1	0	0	0	0	0	0	0	615	1856	64	5		5	ANGPTL3	1	63066746	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3256	63066746	186183875	130	25817										
DOCK7	0	genome.wustl.edu	37	chr1	63113857	63113857	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcattctgacggtctatttCttcatttggagttcgatcaa	7	8	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	63113857	63113857	C	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	nonsense	c.652	p.E218*	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	190	0	0	112	36	24.32	-	-	-	A	63113857	C	A	63113857	4	1	275	1	0	0	0	0	0	1	0	0	4727	922	32	2	5853	2	DOCK7	1	63113857	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47111	63113857	186136764	131	25818										
ALG6	0	genome.wustl.edu	37	chr1	63894396	63894396	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaatatttttttctttacGattttagaccagtctgctta	4	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	63894396	63894396	G	A	SNP	ALG6	ENST00000494765	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ALG6	HGNC	ENSG00000088035	607	0	0	309	104	25.18	-	-	-	A	63894396	G	A	63894396	1	1	275	0	1	0	0	0	0	0	0	0	522	1073	37	1		1	ALG6	1	63894396	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	780539	63894396	185356225	132	25819										
EFCAB7	0	genome.wustl.edu	37	chr1	64017495	64017495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtgttttaccgaactacGaaatagagaagtatacatat	8	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	64017495	64017495	G	A	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	missense	c.1046	p.R349Q	0.998	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	242	0	0	143	38	20.88	-	-	-	A	64017495	G	A	64017495	3	1	275	1	0	0	0	0	1	0	0	0	4975	1058	37	1	1072	1	EFCAB7	1	64017495	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	123099	64017495	185233126	133	25820										
EFCAB7	0	genome.wustl.edu	37	chr1	64020952	64020952	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaatgtgtccctttcagaaGaaatattaaaagctttaaat	5	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	64020952	64020952	G	T	SNP	EFCAB7	ENST00000461039	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB7	HGNC	ENSG00000203965	187	0	0	84	46	35.38	-	-	-	T	64020952	G	T	64020952	1	4	275	0	1	0	0	0	0	0	0	0	4975	957	33	2		2	EFCAB7	1	64020952	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3457	64020952	185229669	134	25821										
PGM1	0	genome.wustl.edu	37	chr1	64104379	64104379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctagtgctacaaagattgCtttgtatgagaccccaactg	10	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	64104379	64104379	C	T	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	1	known	missense	c.1106	p.A369V	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	311	0	0	148	45	23.2	-	-	-	T	64104379	C	T	64104379	3	4	275	1	0	0	0	0	1	0	0	0	11871	797	28	4	1382	4	PGM1	1	64104379	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83427	64104379	185146242	135	25822										
ROR1	0	genome.wustl.edu	37	chr1	64516389	64516389	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcaagtccaggatactcGtaagtacttttatctccttt	6	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	64516389	64516389	G	A	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	splice_site	c.482+1	e4+1	1.000	-	-	-	no_errors	ROR1	HGNC	ENSG00000185483	703	2	0.28	373	77	17.11	-	-	-	A	64516389	G	A	64516389	5	1	275	1	0	0	0	0	0	0	1	0	13612	1159	40	1	497	1	ROR1	1	64516389	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	412010	64516389	184734232	136	25823										
CACHD1	0	genome.wustl.edu	37	chr1	65099910	65099910	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaggcatttcagctgattCgaagtacaaacaataacaca	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	65099910	65099910	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	nonsense	c.973	p.R325*	0.991	pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	138	0	0	108	23	17.56	-	-	-	T	65099910	C	T	65099910	4	4	275	1	0	0	0	0	0	1	0	0	2562	876	31	1	846	1	CACHD1	1	65099910	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	583521	65099910	184150711	137	25824										
LEPR	0	genome.wustl.edu	37	chr1	66058356	66058356	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataggcctgaagtgttagaaGattcacctctggttccccaa	9	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	66058356	66058356	G	A	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	missense	c.511	p.D171N	0.975	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	225	0	0	136	27	16.56	-	-	-	A	66058356	G	A	66058356	3	1	275	1	0	0	0	0	1	0	0	0	8782	942	33	2	525	2	LEPR	1	66058356	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	958446	66058356	183192265	138	25825										
PDE4B	0	genome.wustl.edu	37	chr1	66827392	66827392	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccagataagtggagtgaaGaaattaatgcatagttcaag	10	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	66827392	66827392	G	T	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.936	p.K312N	0.983	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	294	0	0	168	28	14.29	-	-	-	T	66827392	G	T	66827392	3	4	275	1	0	0	0	0	1	0	0	0	11713	933	33	2	1328	2	PDE4B	1	66827392	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	769036	66827392	182423229	139	25826										
WDR78	0	genome.wustl.edu	37	chr1	67292637	67292637	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaaagatggcttgacattCtcctgttgccatataataac	6	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	67292637	67292637	C	A	SNP	WDR78	ENST00000371026	human	ensembl	69_37n	-1	known	missense	c.2205	p.E735D	0.011	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	167	0	0	104	19	15.45	-	-	-	A	67292637	C	A	67292637	3	1	275	1	0	0	0	0	1	0	0	0	17425	912	32	2	353	2	WDR78	1	67292637	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	465245	67292637	181957984	140	25827										
C1orf141	0	genome.wustl.edu	37	chr1	67559239	67559239	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgtcaaaagtaacattcGtacatattctgtgtcatgga	7	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	67559239	67559239	G	A	SNP	C1orf141	ENST00000371006	human	ensembl	69_37n	-1	known	nonsense	c.652	p.R218*	0.997	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963	95	0	0	80	16	16.67	-	-	-	A	67559239	G	A	67559239	4	1	275	1	0	0	0	0	0	1	0	0	2020	1153	40	1	554	1	C1orf141	1	67559239	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	266602	67559239	181691382	141	25828										
IL23R	0	genome.wustl.edu	37	chr1	67721583	67721583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagatattcctaatatgaaAaacagcaatgttgtgaaaat	7	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	67721583	67721583	A	C	SNP	IL23R	ENST00000347310	human	ensembl	69_37n	1	known	missense	c.1212	p.K404N	0.067	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594	278	0	0	166	64	27.83	-	-	-	C	67721583	A	C	67721583	3	2	275	1	0	0	0	0	1	0	0	0	7730	11	1	5	1246	5	IL23R	1	67721583	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	162344	67721583	181529038	142	25829										
DIRAS3	0	genome.wustl.edu	37	chr1	68512321	68512321	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcacttgtcaagcagcttCtcagtggtgttgggcatctg	12	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	68512321	68512321	C	A	SNP	DIRAS3	ENST00000370981	human	ensembl	69_37n	-1	known	missense	c.660	p.E220D	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS3	HGNC	ENSG00000162595	206	0	0	104	17	14.05	-	-	-	A	68512321	C	A	68512321	3	1	275	1	0	0	0	0	1	0	0	0	4568	912	32	2	33	2	DIRAS3	1	68512321	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	790738	68512321	180738300	143	25830										
WLS	0	genome.wustl.edu	37	chr1	68603489	68603489	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actggtcttctccatagtttTtatgggatggtgcatacaag	10	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	68603489	68603489	T	G	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.1490	p.K497T	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	181	0	0	125	43	25.6	-	-	-	G	68603489	T	G	68603489	3	3	275	1	0	0	0	0	1	0	0	0	17473	1841	64	5	269	5	WLS	1	68603489	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	91168	68603489	180647132	144	25831										
RPE65	0	genome.wustl.edu	37	chr1	68904758	68904758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttttgtcagcaatatgaaGccaaaccttgaaaaatgagg	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	68904758	68904758	G	A	SNP	RPE65	ENST00000262340	human	ensembl	69_37n	-1	known	missense	c.865	p.L289F	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	1123	0	0	501	223	30.76	-	-	-	A	68904758	G	A	68904758	3	1	275	1	0	0	0	0	1	0	0	0	13631	971	34	4	760	4	RPE65	1	68904758	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	301269	68904758	180345863	145	25832										
DEPDC1	0	genome.wustl.edu	37	chr1	68948067	68948067	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcactgaatggcttttgaAtattttcctctgaatgaaga	8	7	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	68948067	68948067	A	G	SNP	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	missense	c.1424	p.I475T	0.000	superfamily_Rho_GTPase_activation_prot	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	230	0	0	149	31	17.22	-	-	-	G	68948067	A	G	68948067	3	3	275	1	0	0	0	0	1	0	0	0	4475	101	4	5	1031	5	DEPDC1	1	68948067	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	43309	68948067	180302554	146	25833										
LRRC7	0	genome.wustl.edu	37	chr1	70504377	70504377	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccactgccgcccggaatcttCtaaaggtgttatttcaatta	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	70504377	70504377	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.2756	p.S919F	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	48	0	0	24	13	35.14	-	-	-	T	70504377	C	T	70504377	3	4	275	1	0	0	0	0	1	0	0	0	9086	913	32	2	2830	2	LRRC7	1	70504377	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1556310	70504377	178746244	147	25834										
LRRIQ3	0	genome.wustl.edu	37	chr1	74492646	74492646	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaatgtcttttatatatttCttgagatctaagaggagaaa	7	4	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	74492646	74492646	C	A	SNP	LRRIQ3	ENST00000354431	human	ensembl	69_37n	-1	known	nonsense	c.1726	p.E576*	0.483	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620	179	0	0	126	19	13.1	-	-	-	A	74492646	C	A	74492646	4	1	275	1	0	0	0	0	0	1	0	0	9096	922	32	2	152	2	LRRIQ3	1	74492646	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3988269	74492646	174757975	148	25835										
FPGT	0	genome.wustl.edu	37	chr1	74670213	74670213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccttaaatatgaatcctgGaattctggttacctgtgcag	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	74670213	74670213	G	A	SNP	FPGT	ENST00000370898	human	ensembl	69_37n	1	known	missense	c.482	p.G161E	1.000	pfam_Fucokinase,pirsf_Fucose-1-phosphate_GuaTrfase	pfam_Fucokinase,superfamily_Trimer_LpxA-like,pirsf_Fucose-1-phosphate_GuaTrfase	-	no_errors	FPGT	HGNC	ENSG00000254685	131	0	0	58	24	29.27	-	-	-	A	74670213	G	A	74670213	3	1	275	1	0	0	0	0	1	0	0	0	6085	1174	41	2	496	2	FPGT	1	74670213	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	177567	74670213	174580408	149	25836										
C1orf173	0	genome.wustl.edu	37	chr1	75055549	75055549	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacatctgcttttgttatttCttggtcttcaatttcaattt	4	8	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	75055549	75055549	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	nonsense	c.1942	p.E648*	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	398	1	0.25	172	64	27.12	-	-	-	A	75055549	C	A	75055549	4	1	275	1	0	0	0	0	0	1	0	0	2033	922	32	2	2662	2	C1orf173	1	75055549	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	385336	75055549	174195072	150	25837										
C1orf173	0	genome.wustl.edu	37	chr1	75072410	75072410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatttcttgagctgaaaatTtggctgaaacagaggttttg	10	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	75072410	75072410	T	G	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.1364	p.K455T	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	334	0	0	235	41	14.86	-	-	-	G	75072410	T	G	75072410	3	3	275	1	0	0	0	0	1	0	0	0	2033	1841	64	5	3248	5	C1orf173	1	75072410	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	16861	75072410	174178211	151	25838										
C1orf173	0	genome.wustl.edu	37	chr1	75086598	75086598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatgaatccttcttgaatCctgaaataaacagaaaaatg	5	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	75086598	75086598	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.820	p.D274Y	1.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	152	0	0	108	27	20	-	-	-	A	75086598	C	A	75086598	3	1	275	1	0	0	0	0	1	0	0	0	2033	869	30	2	3800	2	C1orf173	1	75086598	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14188	75086598	174164023	152	25839										
CRYZ	0	genome.wustl.edu	37	chr1	75172902	75172902	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catacttctatataataaaaGagaaatgtagagtaagatag	7	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	75172902	75172902	G	T	SNP	CRYZ	ENST00000492102	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.068	-	-	-	no_errors	CRYZ	HGNC	ENSG00000116791	143	0	0	76	13	14.61	-	-	-	T	75172902	G	T	75172902	1	4	275	0	1	0	0	0	0	0	0	0	3952	957	33	2		2	CRYZ	1	75172902	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	86304	75172902	174077719	153	25840										
TYW3	0	genome.wustl.edu	37	chr1	75229674	75229675	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcatcatatattcataagINSaaaaaaagaaacccagaaaa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	75229674	75229675	-	A	INS	TYW3	ENST00000370867	human	ensembl	69_37n	1	known	frame_shift_ins	c.657_658	p.R221fs	0.931:0.921	NULL	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	303	1	0.33	129	29	18.35	-	-	-	A	75229675	-	A	75229674	7	5	275	1	0	1	1	0	0	0	0	0	16917	933	33	0	679	0	TYW3	1	75229674	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	56772	75229674	174020947	154	25841										
ST6GALNAC3	0	genome.wustl.edu	37	chr1	76877707	76877707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcagcctttgcaactggaCtgtgacctttgtgccatagt	9	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	76877707	76877707	C	A	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	69_37n	1	known	missense	c.228	p.D76E	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005	345	0	0	221	47	17.54	-	-	-	A	76877707	C	A	76877707	3	1	275	1	0	0	0	0	1	0	0	0	15316	564	20	4	238	4	ST6GALNAC3	1	76877707	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1648033	76877707	172372914	155	25842										
AK5	0	genome.wustl.edu	37	chr1	77987614	77987614	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaggtgaagcaaggggaaGagttcggacgcagggtgagt	21	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	77987614	77987614	G	T	SNP	AK5	ENST00000354567	human	ensembl	69_37n	1	known	nonsense	c.1414	p.E472*	1.000	pfam_Adenylate_kin,prints_Adenylate_kin,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	188	0	0	118	19	13.87	-	-	-	T	77987614	G	T	77987614	4	4	275	1	0	0	0	0	0	1	0	0	443	943	33	2	1460	2	AK5	1	77987614	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1109907	77987614	171263007	156	25843										
NEXN	0	genome.wustl.edu	37	chr1	78383873	78383873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaggaacaaaggaagagaaCggaggaggaacgaaaacgca	15	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	78383873	78383873	C	T	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.362	p.T121M	0.854	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	535	2	0.37	367	62	14.32	-	-	-	T	78383873	C	T	78383873	3	4	275	1	0	0	0	0	1	0	0	0	10427	536	19	1	376	1	NEXN	1	78383873	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	396259	78383873	170866748	157	25844										
NEXN	0	genome.wustl.edu	37	chr1	78392441	78392441	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaaaaaaagaatcactttCtcccggaaaattgaaactaa	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	78392441	78392441	C	A	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.728	p.S243Y	0.998	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	121	0	0	72	14	16.28	-	-	-	A	78392441	C	A	78392441	3	1	275	1	0	0	0	0	1	0	0	0	10427	913	32	2	754	2	NEXN	1	78392441	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8568	78392441	170858180	158	25845										
NEXN	0	genome.wustl.edu	37	chr1	78395130	78395130	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaaggaaagcagaagaaGaagccagaaggagaatagag	13	3	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	78395130	78395130	G	T	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	nonsense	c.994	p.E332*	1.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	547	0	0	342	120	25.97	-	-	-	T	78395130	G	T	78395130	4	4	275	1	0	0	0	0	0	1	0	0	10427	943	33	2	1024	2	NEXN	1	78395130	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2689	78395130	170855491	159	25846										
NEXN	0	genome.wustl.edu	37	chr1	78395175	78395175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagaaggcgtttgctgaaGcaaggagaaatatggtaaga	13	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	78395175	78395175	G	A	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.1039	p.A347T	1.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	535	1	0.19	404	50	11.01	-	-	-	A	78395175	G	A	78395175	3	1	275	1	0	0	0	0	1	0	0	0	10427	971	34	4	1069	4	NEXN	1	78395175	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45	78395175	170855446	160	25847										
NEXN	0	genome.wustl.edu	37	chr1	78407678	78407678	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgtttttagaaggcaagcAattgttaatcttggcccact	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	78407678	78407678	A	C	SNP	NEXN	ENST00000470735	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NEXN	HGNC	ENSG00000162614	107	0	0	45	19	29.69	-	-	-	C	78407678	A	C	78407678	1	2	275	0	1	0	0	0	0	0	0	0	10427	145	5	5		5	NEXN	1	78407678	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	12503	78407678	170842943	161	25848										
IFI44	0	genome.wustl.edu	37	chr1	79125147	79125147	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtaaagatcaaaagaattCgaagggagttggtaaacgct	11	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	79125147	79125147	C	T	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	nonsense	c.991	p.R331*	0.216	NULL	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	199	0	0	98	28	22.05	-	-	-	T	79125147	C	T	79125147	4	4	275	1	0	0	0	0	0	1	0	0	7571	876	31	1	1009	1	IFI44	1	79125147	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	717469	79125147	170125474	162	25849										
ELTD1	0	genome.wustl.edu	37	chr1	79403498	79403498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccttgtttcttacctatatCcgttgaatttgtatcaaact	4	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	79403498	79403498	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.754	p.D252N	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	185	0	0	107	17	13.71	-	-	-	T	79403498	C	T	79403498	3	4	275	1	0	0	0	0	1	0	0	0	5121	855	30	2	1358	2	ELTD1	1	79403498	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	278351	79403498	169847123	163	25850										
LPHN2	0	genome.wustl.edu	37	chr1	82409048	82409048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggaggaaagactgatatcGacctagcagttgatgaaaat	13	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	82409048	82409048	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.793	p.D265N	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	234	0	0	136	74	35.24	-	-	-	A	82409048	G	A	82409048	3	1	275	1	0	0	0	0	1	0	0	0	8982	1058	37	1	807	1	LPHN2	1	82409048	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3005550	82409048	166841573	164	25851										
LPHN2	0	genome.wustl.edu	37	chr1	82409204	82409204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgcatcaaatgcttttatgAtatgcggagtcctctatgtg	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	82409204	82409204	A	G	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.949	p.I317V	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	225	0	0	141	26	15.57	-	-	-	G	82409204	A	G	82409204	3	3	275	1	0	0	0	0	1	0	0	0	8982	333	12	5	963	5	LPHN2	1	82409204	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	156	82409204	166841417	165	25852										
TTLL7	0	genome.wustl.edu	37	chr1	84369810	84369810	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgagccaatatgaagccacTttggttttatgatacttcca	7	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	84369810	84369810	T	G	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.2160	p.K720N	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	458	0	0	270	44	14.01	-	-	-	G	84369810	T	G	84369810	3	3	275	1	0	0	0	0	1	0	0	0	16829	1606	56	5	519	5	TTLL7	1	84369810	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1960606	84369810	164880811	166	25853										
TTLL7	0	genome.wustl.edu	37	chr1	84372071	84372071	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaaccggatcttcatgtCtttgagaacaaataaggtct	9	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	84372071	84372071	C	A	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.2068	p.D690Y	0.999	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	836	0	0	355	170	32.38	-	-	-	A	84372071	C	A	84372071	3	1	275	1	0	0	0	0	1	0	0	0	16829	913	32	2	615	2	TTLL7	1	84372071	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2261	84372071	164878550	167	25854										
TTLL7	0	genome.wustl.edu	37	chr1	84412924	84412924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcaggaaagatccaagttCgaggaacaaaggtataatcc	10	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	84412924	84412924	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.389	p.R130Q	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	624	0	0	200	180	47.24	-	-	-	T	84412924	C	T	84412924	3	4	275	1	0	0	0	0	1	0	0	0	16829	884	31	1	2338	1	TTLL7	1	84412924	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40853	84412924	164837697	168	25855										
PRKACB	0	genome.wustl.edu	37	chr1	84662396	84662396	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatctaaaacctgaaaatCtcttaattgaccatcaaggc	6	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	84662396	84662396	C	A	SNP	PRKACB	ENST00000370685	human	ensembl	69_37n	1	known	missense	c.658	p.L220I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875	180	0	0	68	14	17.07	-	-	-	A	84662396	C	A	84662396	3	1	275	1	0	0	0	0	1	0	0	0	12579	913	32	2	730	2	PRKACB	1	84662396	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	249472	84662396	164588225	169	25856										
PRKACB	0	genome.wustl.edu	37	chr1	84679970	84679970	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcacaagtggtttgccacGacagattggattgctattta	9	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	84679970	84679970	G	A	SNP	PRKACB	ENST00000370685	human	ensembl	69_37n	1	known	silent	c.1041	p.T347	0.959	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875	248	1	0.4	138	24	14.81	-	-	-	A	84679970	G	A	84679970	2	1	275	1	0	0	0	0	0	0	0	1	12579	1045	37	1		1	PRKACB	1	84679970	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17574	84679970	164570651	170	25857										
SSX2IP	0	genome.wustl.edu	37	chr1	85121572	85121572	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtctctccctctcaaaattCtttttctgctctttaaaaag	3	12	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85121572	85121572	C	A	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	missense	c.1332	p.K444N	1.000	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	544	0	0	278	71	20.29	-	-	-	A	85121572	C	A	85121572	3	1	275	1	0	0	0	0	1	0	0	0	15295	912	32	2	528	2	SSX2IP	1	85121572	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	441602	85121572	164129049	171	25858										
SSX2IP	0	genome.wustl.edu	37	chr1	85122063	85122063	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctgagttttaatcatttCtttacactgctgaatttcta	5	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85122063	85122063	C	A	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	nonsense	c.1183	p.E395*	1.000	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	459	0	0	222	34	13.28	-	-	-	A	85122063	C	A	85122063	4	1	275	1	0	0	0	0	0	1	0	0	15295	922	32	2	681	2	SSX2IP	1	85122063	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	491	85122063	164128558	172	25859										
SSX2IP	0	genome.wustl.edu	37	chr1	85122088	85122088	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgctgaatttctaactcGagtttttcagtttcttgttc	6	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85122088	85122088	G	A	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	silent	c.1158	p.L386	0.006	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	487	0	0	203	82	28.57	-	-	-	A	85122088	G	A	85122088	2	1	275	1	0	0	0	0	0	0	0	1	15295	1045	37	1		1	SSX2IP	1	85122088	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25	85122088	164128533	173	25860										
MCOLN3	0	genome.wustl.edu	37	chr1	85495051	85495051	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgggaagttctcttcatttCtctgtgaaatgagaacgatg	10	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85495051	85495051	C	A	SNP	MCOLN3	ENST00000475312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	MCOLN3	HGNC	ENSG00000055732	33	0	0	18	5	21.74	-	-	-	A	85495051	C	A	85495051	1	1	275	0	1	0	0	0	0	0	0	0	9468	928	32	2		2	MCOLN3	1	85495051	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	372963	85495051	163755570	174	25861										
WDR63	0	genome.wustl.edu	37	chr1	85548084	85548084	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagggcaaagaaaactatttAaatgtgagcaaaccccaagc	9	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85548084	85548084	A	C	SNP	WDR63	ENST00000294664	human	ensembl	69_37n	1	known	missense	c.387	p.L129F	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643	480	0	0	300	70	18.92	-	-	-	C	85548084	A	C	85548084	3	2	275	1	0	0	0	0	1	0	0	0	17411	359	13	5	401	5	WDR63	1	85548084	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	53033	85548084	163702537	175	25862										
SYDE2	0	genome.wustl.edu	37	chr1	85624729	85624729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatttaaaaagtagttttCcccacagctgctccagtctc	6	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85624729	85624729	C	T	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	missense	c.3289	p.E1097K	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	105	0	0	70	19	21.11	-	-	-	T	85624729	C	T	85624729	3	4	275	1	0	0	0	0	1	0	0	0	15528	864	30	2	299	2	SYDE2	1	85624729	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	76645	85624729	163625892	176	25863										
BCL10	0	genome.wustl.edu	37	chr1	85736371	85736371	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttctgtatcaggaagttCtgtgttttttctcgccgaat	8	8	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	85736371	85736371	C	A	SNP	BCL10	ENST00000271015	human	ensembl	69_37n	-1	known	missense	c.276	p.Q92H	1.000	pfam_CARD,superfamily_DEATH-like	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867	356	0	0	238	55	18.77	-	-	-	A	85736371	C	A	85736371	3	1	275	1	0	0	0	0	1	0	0	0	1366	912	32	2	433	2	BCL10	1	85736371	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	111642	85736371	163514250	177	25864										
COL24A1	0	genome.wustl.edu	37	chr1	86210420	86210420	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttatctcgtgtgccaagaGgattcttgatgctgtgcaat	12	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	86210420	86210420	G	T	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.4601	p.P1534H	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	344	0	0	238	47	16.49	-	-	-	T	86210420	G	T	86210420	3	4	275	1	0	0	0	0	1	0	0	0	3713	1000	35	4	559	4	COL24A1	1	86210420	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	474049	86210420	163040201	178	25865										
ODF2L	0	genome.wustl.edu	37	chr1	86824488	86824488	+	Missense_Mutation	SNP	T	T	G													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttctctacatttttattTttggtttttgttatttggtt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	86824488	86824488	T	G	SNP	ODF2L	ENST00000317336	human	ensembl	69_37n	-1	known	missense	c.1341	p.K447N	1.000	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417	143	0	0	100	18	15.25	-	-	-	G	86824488	T	G	86824488	3	3	275	1	0	0	0	0	1	0	0	0	10901	1838	64	5	769	5	ODF2L	1	86824488	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	614068	86824488	162426133	179	25866	233	2								
ODF2L	0	genome.wustl.edu	37	chr1	86824492	86824492	+	Missense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctacatttttatttttgGtttttgttatttggttattt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	86824492	86824492	G	T	SNP	ODF2L	ENST00000317336	human	ensembl	69_37n	-1	known	missense	c.1337	p.T446N	0.862	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417	159	0	0	111	17	13.28	-	-	-	T	86824492	G	T	86824492	3	4	275	1	0	0	0	0	1	0	0	0	10901	1261	44	4	773	4	ODF2L	1	86824492	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4	86824492	162426129	180	25867	233	2								
PKN2	0	genome.wustl.edu	37	chr1	89237460	89237460	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagcaggattattattgaaGaactttcacttgttgctgca	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	89237460	89237460	G	T	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	nonsense	c.883	p.E295*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	144	0	0	91	18	16.51	-	-	-	T	89237460	G	T	89237460	4	4	275	1	0	0	0	0	0	1	0	0	12054	943	33	2	905	2	PKN2	1	89237460	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2412968	89237460	160013161	181	25868										
PKN2	0	genome.wustl.edu	37	chr1	89299076	89299076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgagaaccaaggatactttCggaagaggagcaggaaatgt	13	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	89299076	89299076	C	T	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	missense	c.2900	p.S967L	1.000	pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	149	0	0	104	31	22.96	-	-	-	T	89299076	C	T	89299076	3	4	275	1	0	0	0	0	1	0	0	0	12054	893	31	1	2986	1	PKN2	1	89299076	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61616	89299076	159951545	182	25869										
GBP3	0	genome.wustl.edu	37	chr1	89479028	89479028	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcggtgaatgggcagatcGaagacaaaacattttttctt	10	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	89479028	89479028	G	A	SNP	GBP3	ENST00000370481	human	ensembl	69_37n	-1	known	silent	c.708	p.F236	0.222	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP3	HGNC	ENSG00000117226	236	0	0	117	20	14.6	-	-	-	A	89479028	G	A	89479028	2	1	275	1	0	0	0	0	0	0	0	1	6325	1049	37	1		1	GBP3	1	89479028	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	179952	89479028	159771593	183	25870										
GBP1	0	genome.wustl.edu	37	chr1	89519115	89519115	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttttcattattctgctttCtttttgaaatccctctttta	2	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	89519115	89519115	C	A	SNP	GBP1	ENST00000370473	human	ensembl	69_37n	-1	known	nonsense	c.1702	p.E568*	0.021	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP1	HGNC	ENSG00000117228	489	0	0	263	44	14.33	-	-	-	A	89519115	C	A	89519115	4	1	275	1	0	0	0	0	0	1	0	0	6323	922	32	2	80	2	GBP1	1	89519115	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40087	89519115	159731506	184	25871										
GBP5	0	genome.wustl.edu	37	chr1	89730585	89730585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaaggccaggactgcattCtctatgcaaggcagatcccc	10	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	89730585	89730585	C	T	SNP	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	silent	c.933	p.E311	0.997	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	127	0	0	75	15	16.67	-	-	-	T	89730585	C	T	89730585	2	4	275	1	0	0	0	0	0	0	0	1	6327	912	32	2		2	GBP5	1	89730585	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	211470	89730585	159520036	185	25872										
LRRC8C	0	genome.wustl.edu	37	chr1	90179421	90179421	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgactggaattgcctcttaTcatgctctctggccttccag	8	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	90179421	90179421	T	C	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.1292	p.I431T	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	110	0	0	51	13	20.31	-	-	-	C	90179421	T	C	90179421	3	2	275	1	0	0	0	0	1	0	0	0	9089	1435	50	5	1298	5	LRRC8C	1	90179421	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	448836	90179421	159071200	186	25873										
LRRC8D	0	genome.wustl.edu	37	chr1	90399814	90399814	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatacctttgaaggaatattCtttcgaaaaagtcagagaag	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	90399814	90399814	C	A	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	missense	c.1187	p.S396Y	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	137	0	0	100	21	17.36	-	-	-	A	90399814	C	A	90399814	3	1	275	1	0	0	0	0	1	0	0	0	9090	913	32	2	1189	2	LRRC8D	1	90399814	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	220393	90399814	158850807	187	25874										
LRRC8D	0	genome.wustl.edu	37	chr1	90399945	90399945	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttggtgtgttcttgtcaGaagttagtgaaaataaactt	10	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	90399945	90399945	G	T	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	nonsense	c.1318	p.E440*	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	54	0	0	22	9	29.03	-	-	-	T	90399945	G	T	90399945	4	4	275	1	0	0	0	0	0	1	0	0	9090	943	33	2	1320	2	LRRC8D	1	90399945	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	131	90399945	158850676	188	25875										
LRRC8D	0	genome.wustl.edu	37	chr1	90400314	90400314	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatttgctcaaaaaccttCgagagttgtacttaataggc	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	90400314	90400314	C	T	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	nonsense	c.1687	p.R563*	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	62	0	0	31	10	23.81	-	-	-	T	90400314	C	T	90400314	4	4	275	1	0	0	0	0	0	1	0	0	9090	876	31	1	1689	1	LRRC8D	1	90400314	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	369	90400314	158850307	189	25876										
HFM1	0	genome.wustl.edu	37	chr1	91726751	91726751	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatacaggagaaaaaaatccGaacaattatgaactactttt	5	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	91726751	91726751	G	A	SNP	HFM1	ENST00000462405	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HFM1	HGNC	ENSG00000162669	77	0	0	36	10	21.74	-	-	-	A	91726751	G	A	91726751	1	1	275	0	1	0	0	0	0	0	0	0	7134	1073	37	1		1	HFM1	1	91726751	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1326437	91726751	157523870	190	25877										
BRDT	0	genome.wustl.edu	37	chr1	92446270	92446270	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagctaaataaaaagaaagAgaagtctaaaaaggaaaaga	8	2	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	92446270	92446270	A	G	SNP	BRDT	ENST00000362005	human	ensembl	69_37n	1	known	missense	c.1358	p.E453G	0.960	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	87	0	0	65	11	14.47	-	-	-	G	92446270	A	G	92446270	3	3	275	1	0	0	0	0	1	0	0	0	1516	304	11	5	1388	5	BRDT	1	92446270	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	719519	92446270	156804351	191	25878										
EPHX4	0	genome.wustl.edu	37	chr1	92511185	92511185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatggtgatgaagcttattgTtattaacttccctcatccaa	6	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	92511185	92511185	T	C	SNP	EPHX4	ENST00000370383	human	ensembl	69_37n	1	known	missense	c.572	p.V191A	1.000	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031	476	0	0	310	61	16.44	-	-	-	C	92511185	T	C	92511185	3	2	275	1	0	0	0	0	1	0	0	0	5219	1725	60	5	586	5	EPHX4	1	92511185	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	64915	92511185	156739436	192	25879										
EPHX4	0	genome.wustl.edu	37	chr1	92518135	92518135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgccaattaacaacagaGgatcttgaagcttatattta	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	92518135	92518135	G	T	SNP	EPHX4	ENST00000370383	human	ensembl	69_37n	1	known	missense	c.777	p.E259D	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031	238	0	0	186	25	11.85	-	-	-	T	92518135	G	T	92518135	3	4	275	1	0	0	0	0	1	0	0	0	5219	991	35	4	799	4	EPHX4	1	92518135	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6950	92518135	156732486	193	25880										
EVI5	0	genome.wustl.edu	37	chr1	93101762	93101762	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtgtaggtttcttaccttCtctatatccaagactttatc	5	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	93101762	93101762	C	T	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	silent	c.1509	p.E503	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	229	0	0	130	24	15.58	-	-	-	T	93101762	C	T	93101762	2	4	275	1	0	0	0	0	0	0	0	1	5326	912	32	2		2	EVI5	1	93101762	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	583627	93101762	156148859	194	25881										
MTF2	0	genome.wustl.edu	37	chr1	93584984	93584984	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggacctttctgttaaaaGaaagaaaagccattttctta	7	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	93584984	93584984	G	T	SNP	MTF2	ENST00000468457	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033	215	1	0.46	130	23	15.03	-	-	-	T	93584984	G	T	93584984	1	4	275	0	1	0	0	0	0	0	0	0	9995	957	33	2		2	MTF2	1	93584984	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	483222	93584984	155665637	195	25882										
CCDC18	0	genome.wustl.edu	37	chr1	93648932	93648932	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaagaaatggaatctagttCatcagactactataataaag	6	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	93648932	93648932	C	A	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	nonsense	c.368	p.S123*	0.990	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	197	0	0	96	14	12.73	-	-	-	A	93648932	C	A	93648932	4	1	275	1	0	0	0	0	0	1	0	0	2820	838	29	2	374	2	CCDC18	1	93648932	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	63948	93648932	155601689	196	25883										
FNBP1L	0	genome.wustl.edu	37	chr1	94016635	94016635	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgttcccacgtcatacataGatgtaactctagagaaaaac	6	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94016635	94016635	G	A	SNP	FNBP1L	ENST00000271234	human	ensembl	69_37n	1	known	missense	c.1783	p.D595N	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942	552	0	0	316	40	11.24	-	-	-	A	94016635	G	A	94016635	3	1	275	1	0	0	0	0	1	0	0	0	6012	942	33	2	1845	2	FNBP1L	1	94016635	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	367703	94016635	155233986	197	25884										
DNTTIP2	0	genome.wustl.edu	37	chr1	94336281	94336281	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagttcttccacaatagttCttttcctttgcttcttggga	7	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94336281	94336281	C	A	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	missense	c.2135	p.R712I	0.998	pfam_Fcf2	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	310	0	0	131	27	17.09	-	-	-	A	94336281	C	A	94336281	3	1	275	1	0	0	0	0	1	0	0	0	4717	913	32	2	143	2	DNTTIP2	1	94336281	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	319646	94336281	154914340	198	25885										
ABCA4	0	genome.wustl.edu	37	chr1	94488947	94488947	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatagtttcttacctctgTtcattgacccagaatttgct	5	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94488947	94488947	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.4662	p.E1554	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	259	0	0	167	21	11.17	-	-	-	C	94488947	T	C	94488947	2	2	275	1	0	0	0	0	0	0	0	1	34	1722	60	5		5	ABCA4	1	94488947	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	152666	94488947	154761674	199	25886										
ARHGAP29	0	genome.wustl.edu	37	chr1	94640033	94640033	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaaacagtagtagcagcgtCttttctattaactccttcaa	5	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94640033	94640033	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.3178	p.D1060Y	0.800	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	247	0	0	159	31	16.15	-	-	-	A	94640033	C	A	94640033	3	1	275	1	0	0	0	0	1	0	0	0	880	913	32	2	611	2	ARHGAP29	1	94640033	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	151086	94640033	154610588	200	25887										
ARHGAP29	0	genome.wustl.edu	37	chr1	94645488	94645488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctataaattccttgtacaatCgaaataaaataaatggttct	4	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94645488	94645488	C	T	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.2273	p.R758Q	0.999	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	147	0	0	85	40	32	-	-	-	T	94645488	C	T	94645488	3	4	275	1	0	0	0	0	1	0	0	0	880	884	31	1	1528	1	ARHGAP29	1	94645488	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5455	94645488	154605133	201	25888										
ARHGAP29	0	genome.wustl.edu	37	chr1	94668239	94668239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctcatattcatcttgaCgttgcatgcataataatttt	4	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94668239	94668239	C	T	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.1004	p.R335H	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	319	0	0	174	25	12.56	-	-	-	T	94668239	C	T	94668239	3	4	275	1	0	0	0	0	1	0	0	0	880	536	19	1	2833	1	ARHGAP29	1	94668239	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22751	94668239	154582382	202	25889										
ABCD3	0	genome.wustl.edu	37	chr1	94945978	94945978	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaagtgaatttattattaTatcccagaactttgtgtatc	5	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	94945978	94945978	T	C	SNP	ABCD3	ENST00000493416	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528	269	0	0	153	19	11.05	-	-	-	C	94945978	T	C	94945978	1	2	275	0	1	0	0	0	0	0	0	0	62	1421	49	5		5	ABCD3	1	94945978	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	277739	94945978	154304643	203	25890										
TMEM56	0	genome.wustl.edu	37	chr1	95609561	95609561	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggttttcagcaaaagtttCtccaggtttcaatagtctca	7	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	95609561	95609561	C	A	SNP	TMEM56	ENST00000370203	human	ensembl	69_37n	1	known	missense	c.104	p.S35Y	0.998	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM56	HGNC	ENSG00000152078	275	1	0.36	126	29	18.71	-	-	-	A	95609561	C	A	95609561	3	1	275	1	0	0	0	0	1	0	0	0	16278	913	32	2	106	2	TMEM56	1	95609561	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	663583	95609561	153641060	204	25891										
TMEM56	0	genome.wustl.edu	37	chr1	95657404	95657404	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaagccaaaaatagtcttCagaatggaaaacttgattaa	7	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	95657404	95657404	C	A	SNP	TMEM56	ENST00000370203	human	ensembl	69_37n	1	known	missense	c.772	p.Q258K	1.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM56	HGNC	ENSG00000152078	141	0	0	104	42	28.77	-	-	-	A	95657404	C	A	95657404	3	1	275	1	0	0	0	0	1	0	0	0	16278	827	29	2	794	2	TMEM56	1	95657404	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47843	95657404	153593217	205	25892										
PTBP2	0	genome.wustl.edu	37	chr1	97235334	97235334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcgtgtacttcatattcGaaaattacctggggaagtaa	8	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	97235334	97235334	G	A	SNP	PTBP2	ENST00000394184	human	ensembl	69_37n	1	known	missense	c.224	p.R75Q	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP2	HGNC	ENSG00000117569	271	1	0.37	116	40	25.32	-	-	-	A	97235334	G	A	97235334	3	1	275	1	0	0	0	0	1	0	0	0	12806	1058	37	1	205	1	PTBP2	1	97235334	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1577930	97235334	152015287	206	25893										
PTBP2	0	genome.wustl.edu	37	chr1	97278384	97278384	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatcaagggctaacaaaaGattttggtaattccccattg	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	97278384	97278384	G	A	SNP	PTBP2	ENST00000394184	human	ensembl	69_37n	1	known	missense	c.1336	p.D446N	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP2	HGNC	ENSG00000117569	308	0	0	161	38	19.1	-	-	-	A	97278384	G	A	97278384	3	1	275	1	0	0	0	0	1	0	0	0	12806	942	33	2	1334	2	PTBP2	1	97278384	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43050	97278384	151972237	207	25894										
DPYD	0	genome.wustl.edu	37	chr1	97544613	97544613	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaccattttgatgcagtcGacaatagggcaaacactgag	10	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	97544613	97544613	G	A	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	silent	c.2997	p.V999	1.000	NULL	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	518	1	0.19	325	38	10.44	-	-	-	A	97544613	G	A	97544613	2	1	275	1	0	0	0	0	0	0	0	1	4780	1045	37	1		1	DPYD	1	97544613	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	266229	97544613	151706008	208	25895										
AGL	0	genome.wustl.edu	37	chr1	100327048	100327048	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgagtttattaacatgtgcTttttatttagggtatgagct	9	3	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	100327048	100327048	T	G	SNP	AGL	ENST00000361522	human	ensembl	69_37n	1	known	silent	c.21	p.A7	0.048	NULL	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	68	0	0	54	15	21.74	-	-	-	G	100327048	T	G	100327048	2	3	275	1	0	0	0	0	0	0	0	1	384	1596	56	5		5	AGL	1	100327048	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2782435	100327048	148923573	209	25896										
AGL	0	genome.wustl.edu	37	chr1	100340971	100340971	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactggctggccatggtccaAaactaggacctgtcactaga	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	100340971	100340971	A	C	SNP	AGL	ENST00000294724	human	ensembl	69_37n	1	known	missense	c.1243	p.K415Q	1.000	superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	349	0	0	253	41	13.95	-	-	-	C	100340971	A	C	100340971	3	2	275	1	0	0	0	0	1	0	0	0	384	15	1	5	1346	5	AGL	1	100340971	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	13923	100340971	148909650	210	25897										
AGL	0	genome.wustl.edu	37	chr1	100350168	100350168	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtcgctgttggaattcttCgaaatcatctgacacaattc	7	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	100350168	100350168	C	T	SNP	AGL	ENST00000294724	human	ensembl	69_37n	1	known	nonsense	c.2590	p.R864*	1.000	tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	121	0	0	76	10	11.63	-	-	-	T	100350168	C	T	100350168	4	4	275	1	0	0	0	0	0	1	0	0	384	876	31	1	2733	1	AGL	1	100350168	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9197	100350168	148900453	211	25898										
VCAM1	0	genome.wustl.edu	37	chr1	101186183	101186183	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccactgaatgggaaggtgacGaatgaggggaccacatctac	13	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101186183	101186183	G	A	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	silent	c.216	p.T72	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	181	0	0	89	34	27.64	-	-	-	A	101186183	G	A	101186183	2	1	275	1	0	0	0	0	0	0	0	1	17234	1045	37	1		1	VCAM1	1	101186183	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	836015	101186183	148064438	212	25899										
VCAM1	0	genome.wustl.edu	37	chr1	101194904	101194904	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagtgacttgtggacataaGaaactggaaaagggaatcca	11	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101194904	101194904	G	T	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.1170	p.K390N	0.755	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	251	0	0	161	24	12.97	-	-	-	T	101194904	G	T	101194904	3	4	275	1	0	0	0	0	1	0	0	0	17234	933	33	2	1188	2	VCAM1	1	101194904	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8721	101194904	148055717	213	25900										
VCAM1	0	genome.wustl.edu	37	chr1	101200232	101200232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatggcgcctataccatccGaaaggcccagttgaaggatg	12	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101200232	101200232	G	A	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.1967	p.R656Q	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	379	1	0.26	202	43	17.41	-	-	-	A	101200232	G	A	101200232	3	1	275	1	0	0	0	0	1	0	0	0	17234	1058	37	1	1997	1	VCAM1	1	101200232	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5328	101200232	148050389	214	25901										
EXTL2	0	genome.wustl.edu	37	chr1	101343416	101343416	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagataatcgaagcactcGaatccccattactctcccag	5	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101343416	101343416	G	A	SNP	EXTL2	ENST00000370113	human	ensembl	69_37n	-1	known	nonsense	c.49	p.R17*	0.710	NULL	pfam_HexNAc_Trfase_a	-	no_errors	EXTL2	HGNC	ENSG00000162694	140	0	0	85	15	15	-	-	-	A	101343416	G	A	101343416	4	1	275	1	0	0	0	0	0	1	0	0	5363	1066	37	1	955	1	EXTL2	1	101343416	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	143184	101343416	147907205	215	25902										
S1PR1	0	genome.wustl.edu	37	chr1	101704657	101704657	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaagctgaatatcagcgcGgacaaggagaacagcattaa	12	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101704657	101704657	G	A	SNP	S1PR1	ENST00000305352	human	ensembl	69_37n	1	known	silent	c.117	p.A39	0.000	prints_EDG1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG1_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989	187	0	0	67	31	31.63	-	-	-	A	101704657	G	A	101704657	2	1	275	1	0	0	0	0	0	0	0	1	13879	1103	39	1		1	S1PR1	1	101704657	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	361241	101704657	147545964	216	25903										
S1PR1	0	genome.wustl.edu	37	chr1	101705498	101705498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccaacaaggagatgcgtCgggccttcatccggatcatg	12	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	101705498	101705498	C	T	SNP	S1PR1	ENST00000305352	human	ensembl	69_37n	1	known	missense	c.958	p.R320W	0.905	pfam_7TM_GPCR_olfarory/Srsx,prints_S1P_rcpt,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG1_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989	53	0	0	18	9	33.33	-	-	-	T	101705498	C	T	101705498	3	4	275	1	0	0	0	0	1	0	0	0	13879	875	31	1	960	1	S1PR1	1	101705498	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	841	101705498	147545123	217	25904										
AMY2A	0	genome.wustl.edu	37	chr1	104166590	104166590	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgactgggtctgtgaacatCgatggcgccaaataaggtga	13	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	104166590	104166590	C	T	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	1	known	nonsense	c.1204	p.R402*	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	59	0	0	38	15	28.3	-	-	-	T	104166590	C	T	104166590	4	4	275	1	0	0	0	0	0	1	0	0	594	876	31	1	1234	1	AMY2A	1	104166590	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2461092	104166590	145084031	218	25905										
AMY1C	0	genome.wustl.edu	37	chr1	104297390	104297390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatccttatggatttacacGagtaatgtcaagctaccgtt	7	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	104297390	104297390	G	A	SNP	AMY1C	ENST00000370079	human	ensembl	69_37n	1	known	missense	c.1055	p.R352Q	0.999	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1C	HGNC	ENSG00000187733	208	0	0	104	25	19.38	-	-	-	A	104297390	G	A	104297390	3	1	275	1	0	0	0	0	1	0	0	0	593	1058	37	1	4233	1	AMY1C	1	104297390	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	130800	104297390	144953231	219	25906										
VAV3	0	genome.wustl.edu	37	chr1	108293776	108293776	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtctagagtggttattcGaatttcaccatctccctgag	8	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	108293776	108293776	G	A	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	nonsense	c.1222	p.R408*	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215	418	0	0	277	42	13.17	-	-	-	A	108293776	G	A	108293776	4	1	275	1	0	0	0	0	0	1	0	0	17230	1066	37	1	1406	1	VAV3	1	108293776	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3996386	108293776	140956845	220	25907										
STXBP3	0	genome.wustl.edu	37	chr1	109340848	109340848	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggacaccttttatcaaaGatattatggaggtaaaaatc	9	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	109340848	109340848	G	T	SNP	STXBP3	ENST00000370008	human	ensembl	69_37n	1	known	missense	c.1438	p.D480Y	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266	192	0	0	109	35	24.31	-	-	-	T	109340848	G	T	109340848	3	4	275	1	0	0	0	0	1	0	0	0	15445	942	33	2	1500	2	STXBP3	1	109340848	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1047072	109340848	139909773	221	25908										
AKNAD1	0	genome.wustl.edu	37	chr1	109359684	109359684	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcacctcagattttatttCttcagtgctatcaaagtcac	4	12	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	109359684	109359684	C	A	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	nonsense	c.2365	p.E789*	0.037	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	312	0	0	222	50	18.38	-	-	-	A	109359684	C	A	109359684	4	1	275	1	0	0	0	0	0	1	0	0	464	922	32	2	153	2	AKNAD1	1	109359684	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18836	109359684	139890937	222	25909										
WDR47	0	genome.wustl.edu	37	chr1	109517230	109517230	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgagctccaggggagaatcGaacagagcgaacatcactgg	14	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	109517230	109517230	G	A	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	nonsense	c.2569	p.R857*	0.989	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	184	0	0	78	40	33.9	-	-	-	A	109517230	G	A	109517230	4	1	275	1	0	0	0	0	0	1	0	0	17397	1066	37	1	222	1	WDR47	1	109517230	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	157546	109517230	139733391	223	25910										
SYPL2	0	genome.wustl.edu	37	chr1	110018288	110018288	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcaacaacgaagccaaggAcgtgagctccatcatcgttg	10	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	110018288	110018288	A	G	SNP	SYPL2	ENST00000369872	human	ensembl	69_37n	1	known	missense	c.215	p.D72G	0.966	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYPL2	HGNC	ENSG00000143028	362	0	0	175	30	14.56	-	-	-	G	110018288	A	G	110018288	3	3	275	1	0	0	0	0	1	0	0	0	15555	275	10	5	225	5	SYPL2	1	110018288	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	501058	110018288	139232333	224	25911										
ATXN7L2	0	genome.wustl.edu	37	chr1	110031015	110031015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccccacagggaaggagtgCgacctcaacaggcagtgtgg	14	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	110031015	110031015	C	T	SNP	ATXN7L2	ENST00000369870	human	ensembl	69_37n	1	known	silent	c.711	p.C237	0.996	pfam_SCA7_dom	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	186	0	0	104	28	21.21	-	-	-	T	110031015	C	T	110031015	2	4	275	1	0	0	0	0	0	0	0	1	1221	776	27	1		1	ATXN7L2	1	110031015	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12727	110031015	139219606	225	25912										
AMIGO1	0	genome.wustl.edu	37	chr1	110050452	110050452	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatggtgtccgtgcaaggtGaaattgtgcactttcaattc	10	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	110050452	110050452	G	T	SNP	AMIGO1	ENST00000369862	human	ensembl	69_37n	-1	known	missense	c.1083	p.F361L	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMIGO1	HGNC	ENSG00000181754	81	0	0	40	12	23.08	-	-	-	T	110050452	G	T	110050452	3	4	275	1	0	0	0	0	1	0	0	0	575	1281	45	2	402	2	AMIGO1	1	110050452	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19437	110050452	139200169	226	25913										
EPS8L3	0	genome.wustl.edu	37	chr1	110300114	110300114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgactcacgaagttcagggActtgaagaggatgtgtacga	13	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	110300114	110300114	A	G	SNP	EPS8L3	ENST00000369805	human	ensembl	69_37n	-1	known	missense	c.961	p.S321P	0.019	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758	96	0	0	69	14	16.67	-	-	-	G	110300114	A	G	110300114	3	3	275	1	0	0	0	0	1	0	0	0	5234	275	10	5	859	5	EPS8L3	1	110300114	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	249662	110300114	138950507	227	25914										
SLC6A17	0	genome.wustl.edu	37	chr1	110734722	110734722	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggacaacaactgccacttCgatgccgccctggtgtcctt	9	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	110734722	110734722	C	T	SNP	SLC6A17	ENST00000331565	human	ensembl	69_37n	1	known	silent	c.993	p.F331	0.224	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	314	0	0	167	37	18.05	-	-	-	T	110734722	C	T	110734722	2	4	275	1	0	0	0	0	0	0	0	1	14769	883	31	1		1	SLC6A17	1	110734722	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	434608	110734722	138515899	228	25915										
KCNA10	0	genome.wustl.edu	37	chr1	111059963	111059963	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagcctacactgttgaggaTtctttcaatttctcctggga	9	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111059963	111059963	T	A	SNP	KCNA10	ENST00000369771	human	ensembl	69_37n	-1	known	missense	c.1447	p.I483F	0.002	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105	397	0	0	283	54	15.98	-	-	-	A	111059963	T	A	111059963	3	1	275	1	0	0	0	0	1	0	0	0	8056	1493	52	5	92	5	KCNA10	1	111059963	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	325241	111059963	138190658	229	25916										
KCNA10	0	genome.wustl.edu	37	chr1	111060605	111060605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaccatgaagaaagggtCggtgaacatggtctgggaga	14	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111060605	111060605	C	T	SNP	KCNA10	ENST00000369771	human	ensembl	69_37n	-1	known	missense	c.805	p.D269N	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105	208	0	0	173	29	14.22	-	-	-	T	111060605	C	T	111060605	3	4	275	1	0	0	0	0	1	0	0	0	8056	884	31	1	734	1	KCNA10	1	111060605	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	642	111060605	138190016	230	25917										
KCNA3	0	genome.wustl.edu	37	chr1	111216458	111216458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgatcaggttcatgatgtttCgcgagaaggtggctttgcta	13	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111216458	111216458	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	69_37n	-1	known	missense	c.974	p.R325Q	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272	104	0	0	37	6	13.95	-	-	-	T	111216458	C	T	111216458	3	4	275	1	0	0	0	0	1	0	0	0	8058	884	31	1	757	1	KCNA3	1	111216458	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155853	111216458	138034163	231	25918										
DENND2D	0	genome.wustl.edu	37	chr1	111740539	111740539	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcagttctgagctgcacaGaccaagaggcgcctgcagta	14	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111740539	111740539	G	A	SNP	DENND2D	ENST00000473682	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.939	-	-	-	no_errors	DENND2D	HGNC	ENSG00000162777	145	0	0	66	20	23.26	-	-	-	A	111740539	G	A	111740539	1	1	275	0	1	0	0	0	0	0	0	0	4467	957	33	2		2	DENND2D	1	111740539	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	524081	111740539	137510082	232	25919										
OVGP1	0	genome.wustl.edu	37	chr1	111957920	111957920	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtcagtgcttgaagaattCacagcagatgacagccaaaa	11	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111957920	111957920	C	A	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	silent	c.1203	p.V401	0.004	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	159	0	0	103	27	20.77	-	-	-	A	111957920	C	A	111957920	2	1	275	1	0	0	0	0	0	0	0	1	11398	813	29	2		2	OVGP1	1	111957920	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	217381	111957920	137292701	233	25920										
OVGP1	0	genome.wustl.edu	37	chr1	111958951	111958951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacagctacttaccagcccGcaccaggatatcattcaata	5	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	111958951	111958951	G	A	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.1150	p.R384W	0.000	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	456	1	0.22	283	39	12.07	-	-	-	A	111958951	G	A	111958951	3	1	275	1	0	0	0	0	1	0	0	0	11398	1086	38	1	894	1	OVGP1	1	111958951	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1031	111958951	137291670	234	25921										
RAP1A	0	genome.wustl.edu	37	chr1	112237962	112237962	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctctttttttttcccccaGacagttcagtttgttcaggg	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	112237962	112237962	G	A	SNP	RAP1A	ENST00000356415	human	ensembl	69_37n	1	known	splice_site	c.58-1	e2-1	1.000	-	-	-	no_errors	RAP1A	HGNC	ENSG00000116473	354	0	0	179	23	11.33	-	-	-	A	112237962	G	A	112237962	5	1	275	1	0	0	0	0	0	0	1	0	13118	956	33	2	63	2	RAP1A	1	112237962	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	279011	112237962	137012659	235	25922										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112998750	112998750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattggagaaggagaagagCcgggtgagtaaactggaaga	16	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	112998750	112998750	C	A	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	missense	c.636	p.S212R	1.000	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	404	2	0.49	290	80	21.45	-	-	-	A	112998750	C	A	112998750	3	1	275	1	0	0	0	0	1	0	0	0	4078	738	26	4	650	4	CTTNBP2NL	1	112998750	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	760788	112998750	136251871	236	25923										
ST7L	0	genome.wustl.edu	37	chr1	113119665	113119665	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcttccacggcattaatTtctgctgtgcttaatcctct	6	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	113119665	113119665	T	G	SNP	ST7L	ENST00000358039	human	ensembl	69_37n	-1	known	missense	c.1188	p.E396D	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341	175	0	0	86	24	21.82	-	-	-	G	113119665	T	G	113119665	3	3	275	1	0	0	0	0	1	0	0	0	15321	1838	64	5	598	5	ST7L	1	113119665	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	120915	113119665	136130956	237	25924										
ST7L	0	genome.wustl.edu	37	chr1	113134187	113134187	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgataggctgctttgattcGagctggaggatttctttccc	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	113134187	113134187	G	A	SNP	ST7L	ENST00000358039	human	ensembl	69_37n	-1	known	nonsense	c.661	p.R221*	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341	114	0	0	70	16	18.39	-	-	-	A	113134187	G	A	113134187	4	1	275	1	0	0	0	0	0	1	0	0	15321	1066	37	1	1145	1	ST7L	1	113134187	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14522	113134187	136116434	238	25925										
ST7L	0	genome.wustl.edu	37	chr1	113134201	113134201	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattcgagctggaggatttCtttccctccaagccttctgc	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	113134201	113134201	C	A	SNP	ST7L	ENST00000418497	human	ensembl	69_37n	-1	known	nonsense	c.262	p.E88*	1.000	pfam_ST7	pfam_ST7	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ST7L	HGNC	ENSG00000007341	115	0	0	65	16	19.75	-	-	-	A	113134201	C	A	113134201	4	1	275	1	0	0	0	0	0	1	0	0	15321	913	32	2	1159	2	ST7L	1	113134201	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14	113134201	136116420	239	25926										
SLC16A1	0	genome.wustl.edu	37	chr1	113464717	113464717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaacaatcatgactatacGacttccatatttattcacca	2	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	113464717	113464717	G	A	SNP	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	missense	c.256	p.R86C	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	208	0	0	184	28	13.15	-	-	-	A	113464717	G	A	113464717	3	1	275	1	0	0	0	0	1	0	0	0	14491	1058	37	1	1258	1	SLC16A1	1	113464717	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	330516	113464717	135785904	240	25927										
LRIG2	0	genome.wustl.edu	37	chr1	113650432	113650432	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacacttataatcttaacaGaattaaaaaaattaaaccag	2	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	113650432	113650432	G	T	SNP	LRIG2	ENST00000466069	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LRIG2	HGNC	ENSG00000198799	62	0	0	32	6	15.79	-	-	-	T	113650432	G	T	113650432	1	4	275	0	1	0	0	0	0	0	0	0	9011	957	33	2		2	LRIG2	1	113650432	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	185715	113650432	135600189	241	25928										
MAGI3	0	genome.wustl.edu	37	chr1	114185087	114185087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctccaagtggtagaggtgCtaaagcagtttccagtaggt	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	114185087	114185087	C	T	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	silent	c.1915	p.L639	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	259	0	0	175	26	12.87	-	-	-	T	114185087	C	T	114185087	2	4	275	1	0	0	0	0	0	0	0	1	9263	796	28	4		4	MAGI3	1	114185087	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	534655	114185087	135065534	242	25929										
PHTF1	0	genome.wustl.edu	37	chr1	114269050	114269050	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcatcttaccttcttcttcGatttccattgtttcctgatg	4	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	114269050	114269050	G	A	SNP	PHTF1	ENST00000369604	human	ensembl	69_37n	-1	known	nonsense	c.478	p.R160*	0.961	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793	237	0	0	159	29	15.34	-	-	-	A	114269050	G	A	114269050	4	1	275	1	0	0	0	0	0	1	0	0	11936	1066	37	1	1866	1	PHTF1	1	114269050	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83963	114269050	134981571	243	25930										
RSBN1	0	genome.wustl.edu	37	chr1	114311005	114311005	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagattttttatttcattCattgatctagagttgatttg	8	3	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	114311005	114311005	C	A	SNP	RSBN1	ENST00000261441	human	ensembl	69_37n	-1	known	missense	c.1665	p.M555I	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019	397	0	0	291	38	11.55	-	-	-	A	114311005	C	A	114311005	3	1	275	1	0	0	0	0	1	0	0	0	13782	826	29	2	755	2	RSBN1	1	114311005	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41955	114311005	134939616	244	25931										
OLFML3	0	genome.wustl.edu	37	chr1	114523210	114523210	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggaccaaaggcaagggaaGaaggaatgagaagtacgata	15	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	114523210	114523210	G	T	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	missense	c.371	p.R124I	0.999	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	432	0	0	205	92	30.98	-	-	-	T	114523210	G	T	114523210	3	4	275	1	0	0	0	0	1	0	0	0	10932	942	33	2	377	2	OLFML3	1	114523210	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	212205	114523210	134727411	245	25932										
OLFML3	0	genome.wustl.edu	37	chr1	114524309	114524309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcctccgctataacccccGagaacgccagctctatgcct	7	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	114524309	114524309	G	A	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	missense	c.1139	p.R380Q	0.692	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	150	0	0	97	29	23.02	-	-	-	A	114524309	G	A	114524309	3	1	275	1	0	0	0	0	1	0	0	0	10932	1058	37	1	1149	1	OLFML3	1	114524309	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1099	114524309	134726312	246	25933										
BCAS2	0	genome.wustl.edu	37	chr1	115118301	115118301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgctctaactgggccataGaattgtttacacattcttgc	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	115118301	115118301	G	T	SNP	BCAS2	ENST00000369541	human	ensembl	69_37n	-1	known	missense	c.329	p.S110Y	1.000	pfam_BCAS2	pfam_BCAS2	-	no_errors	BCAS2	HGNC	ENSG00000116752	540	0	0	281	112	28.5	-	-	-	T	115118301	G	T	115118301	3	4	275	1	0	0	0	0	1	0	0	0	1355	942	33	2	364	2	BCAS2	1	115118301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	593992	115118301	134132320	247	25934										
AMPD1	0	genome.wustl.edu	37	chr1	115218219	115218219	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtaagtgtaagatggattCttttccaatgtccactcctg	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	115218219	115218219	C	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.1710	p.K570N	0.987	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	280	0	0	193	35	15.35	-	-	-	A	115218219	C	A	115218219	3	1	275	1	0	0	0	0	1	0	0	0	585	912	32	2	652	2	AMPD1	1	115218219	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	99918	115218219	134032402	248	25935										
CASQ2	0	genome.wustl.edu	37	chr1	116268149	116268149	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatgtttcaaacatttcttCtgggcgcaggcgacgtagag	11	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	116268149	116268149	C	T	SNP	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	missense	c.763	p.E255K	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	159	0	0	82	39	32.23	-	-	-	T	116268149	C	T	116268149	3	4	275	1	0	0	0	0	1	0	0	0	2706	922	32	2	456	2	CASQ2	1	116268149	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1049930	116268149	132982472	249	25936										
ATP1A1	0	genome.wustl.edu	37	chr1	116936207	116936207	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaacacctgttggtgatgAagggcgccccagaaaggatc	12	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	116936207	116936207	A	C	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.1522	p.K508Q	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	291	0	0	196	46	19.01	-	-	-	C	116936207	A	C	116936207	3	2	275	1	0	0	0	0	1	0	0	0	1132	247	9	5	1584	5	ATP1A1	1	116936207	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	668058	116936207	132314414	250	25937										
CD58	0	genome.wustl.edu	37	chr1	117057435	117057435	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcatcttctgttaccaaTcaattggagctacaaaaaaa	4	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	117057435	117057435	T	C	SNP	CD58	ENST00000369489	human	ensembl	69_37n	-1	known	nonstop	c.753	p.*251W	0.000	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815	421	0	0	263	94	26.26	-	-	-	C	117057435	T	C	117057435	4	2	275	1	0	0	0	0	0	0	0	0	3054	1448	50	5	3	5	CD58	1	117057435	Nonstop_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	121228	117057435	132193186	251	25938										
GDAP2	0	genome.wustl.edu	37	chr1	118454616	118454616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatctctgatattacttacGaagtgctatgtgtgttgcat	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	118454616	118454616	G	A	SNP	GDAP2	ENST00000369443	human	ensembl	69_37n	-1	known	missense	c.559	p.R187C	1.000	pfscan_A1pp	pfam_A1pp,superfamily_CRAL-TRIO_dom,smart_A1pp,smart_CRAL-TRIO_dom,pfscan_A1pp	-	no_errors	GDAP2	HGNC	ENSG00000196505	138	1	0.72	132	20	13.16	-	-	-	A	118454616	G	A	118454616	3	1	275	1	0	0	0	0	1	0	0	0	6360	1072	37	1	1019	1	GDAP2	1	118454616	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1397181	118454616	130796005	252	25939										
SPAG17	0	genome.wustl.edu	37	chr1	118574470	118574470	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggatattcaatattgtttCtaaatcaggatccttatctt	6	6	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	118574470	118574470	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	nonsense	c.3454	p.E1152*	0.997	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	585	0	0	328	132	28.7	-	-	-	A	118574470	C	A	118574470	4	1	275	1	0	0	0	0	0	1	0	0	15070	922	32	2	3313	2	SPAG17	1	118574470	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	119854	118574470	130676151	253	25940										
SPAG17	0	genome.wustl.edu	37	chr1	118581952	118581952	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcatctccttcttcttcCtcttctaaataataatcccc	0	16	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	118581952	118581952	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.3282	p.E1094D	0.011	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	658	1	0.15	486	75	13.37	-	-	-	A	118581952	C	A	118581952	3	1	275	1	0	0	0	0	1	0	0	0	15070	680	24	4	3493	4	SPAG17	1	118581952	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7482	118581952	130668669	254	25941										
SPAG17	0	genome.wustl.edu	37	chr1	118634279	118634279	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacagaaatgaattcctctcGaattggattcagcaaataat	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	118634279	118634279	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	nonsense	c.1309	p.R437*	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	579	0	0	325	70	17.72	-	-	-	A	118634279	G	A	118634279	4	1	275	1	0	0	0	0	0	1	0	0	15070	1066	37	1	5518	1	SPAG17	1	118634279	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	52327	118634279	130616342	255	25942										
WARS2	0	genome.wustl.edu	37	chr1	119575659	119575659	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttcagtttttcaatttCacgcttaattggggcaaact	7	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	119575659	119575659	C	A	SNP	WARS2	ENST00000235521	human	ensembl	69_37n	-1	known	nonsense	c.958	p.E320*	1.000	tigrfam_Trp-tRNA-synth	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-synth,tigrfam_Trp-tRNA-synth	-	no_errors	WARS2	HGNC	ENSG00000116874	161	0	0	60	11	15.49	-	-	-	A	119575659	C	A	119575659	4	1	275	1	0	0	0	0	0	1	0	0	17347	835	29	2	128	2	WARS2	1	119575659	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	941380	119575659	129674962	256	25943										
HAO2	0	genome.wustl.edu	37	chr1	119935084	119935084	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttcatcccctatctttgtCtctgtgctttcctttattcc	3	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	119935084	119935084	C	T	SNP	HAO2	ENST00000482991	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	HAO2	HGNC	ENSG00000116882	96	0	0	94	12	11.21	-	-	-	T	119935084	C	T	119935084	1	4	275	0	1	0	0	0	0	0	0	0	7003	928	32	2		2	HAO2	1	119935084	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	359425	119935084	129315537	257	25944										
HMGCS2	0	genome.wustl.edu	37	chr1	120295237	120295237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaggagacacacactttCgggaggctaggcgttttggc	13	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	120295237	120295237	C	T	SNP	HMGCS2	ENST00000369406	human	ensembl	69_37n	-1	known	missense	c.1355	p.R452Q	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240	524	1	0.19	357	129	26.49	-	-	-	T	120295237	C	T	120295237	3	4	275	1	0	0	0	0	1	0	0	0	7284	884	31	1	179	1	HMGCS2	1	120295237	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	360153	120295237	128955384	258	25945										
PDE4DIP	0	genome.wustl.edu	37	chr1	144922635	144922635	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcattaagtttctcttgaaGaatctgaattcagcaaagaa	6	6	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	144922635	144922635	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.772	p.L258I	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	278	0	0	144	57	28.36	-	-	-	T	144922635	G	T	144922635	3	4	275	1	0	0	0	0	1	0	0	0	11716	942	33	2	6430	2	PDE4DIP	1	144922635	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24627398	144922635	104327986	259	25946										
PDE4DIP	0	genome.wustl.edu	37	chr1	145075825	145075825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagcagccaaagtcgcatCggcggcggcagcaggacccg	15	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	145075825	145075825	C	T	SNP	PDE4DIP	ENST00000369348	human	ensembl	69_37n	-1	known	missense	c.38	p.R13Q	0.531	NULL	pfam_Spindle_assoc	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	135	0	0	55	7	11.29	-	-	-	T	145075825	C	T	145075825	3	4	275	1	0	0	0	0	1	0	0	0	11716	884	31	1	8774	1	PDE4DIP	1	145075825	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	153190	145075825	104174796	260	25947										
TXNIP	0	genome.wustl.edu	37	chr1	145440059	145440059	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacctgtgtctgctaaaaaaGaaaagaaagtttcctgcatg	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	145440059	145440059	G	T	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	1	known	nonsense	c.493	p.E165*	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	148	0	0	92	46	33.33	-	-	-	T	145440059	G	T	145440059	4	4	275	1	0	0	0	0	0	1	0	0	16900	943	33	2	507	2	TXNIP	1	145440059	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	364234	145440059	103810562	261	25948										
RBM8A	0	genome.wustl.edu	37	chr1	145509174	145509174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttttccctagaggtggccGaagacgcagcagaagtccag	12	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	145509174	145509174	G	A	SNP	RBM8A	ENST00000330165	human	ensembl	69_37n	1	known	missense	c.488	p.R163Q	1.000	NULL	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom,prints_RNA-bd_8	-	no_errors	RBM8A	HGNC	ENSG00000131795	555	0	0	482	87	15.21	-	-	-	A	145509174	G	A	145509174	3	1	275	1	0	0	0	0	1	0	0	0	13229	1058	37	1	510	1	RBM8A	1	145509174	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69115	145509174	103741447	262	25949										
ITGA10	0	genome.wustl.edu	37	chr1	145532592	145532592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgactgacattgtggatGcactaggagatcggattttt	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	145532592	145532592	G	A	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.1045	p.A349T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	284	0	0	251	31	10.99	-	-	-	A	145532592	G	A	145532592	3	1	275	1	0	0	0	0	1	0	0	0	7927	1319	46	4	1079	4	ITGA10	1	145532592	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23418	145532592	103718029	263	25950										
NUDT17	0	genome.wustl.edu	37	chr1	145587439	145587439	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagctacatctggtgtcAgccacataagggcgctcacc	10	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	145587439	145587439	A	C	SNP	NUDT17	ENST00000334513	human	ensembl	69_37n	-1	known	missense	c.641	p.L214R	0.996	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT17	HGNC	ENSG00000186364	196	0	0	81	35	30.17	-	-	-	C	145587439	A	C	145587439	3	2	275	1	0	0	0	0	1	0	0	0	10807	188	7	5	357	5	NUDT17	1	145587439	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	54847	145587439	103663182	264	25951										
PRKAB2	0	genome.wustl.edu	37	chr1	146638126	146638126	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatctaactttaaagcatcGaacacctcaaaatcagattt	4	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	146638126	146638126	G	A	SNP	PRKAB2	ENST00000254101	human	ensembl	69_37n	-1	known	silent	c.489	p.F163	1.000	NULL	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791	171	0	0	134	25	15.72	-	-	-	A	146638126	G	A	146638126	2	1	275	1	0	0	0	0	0	0	0	1	12577	1049	37	1		1	PRKAB2	1	146638126	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1050687	146638126	102612495	265	25952										
FMO5	0	genome.wustl.edu	37	chr1	146696664	146696664	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagtgtcgcctgtcctaaaGaaaggatgacaaaagacaaa	9	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	146696664	146696664	G	T	SNP	FMO5	ENST00000465173	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	FMO5	HGNC	ENSG00000131781	177	0	0	114	41	26.45	-	-	-	T	146696664	G	T	146696664	1	4	275	0	1	0	0	0	0	0	0	0	6004	957	33	2		2	FMO5	1	146696664	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58538	146696664	102553957	266	25953										
GJA8	0	genome.wustl.edu	37	chr1	147381070	147381070	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgctcaggtgggggcacaaGaagtggagggcgaggggccg	21	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	147381070	147381070	G	T	SNP	GJA8	ENST00000240986	human	ensembl	69_37n	1	known	nonsense	c.988	p.E330*	0.965	prints_Connexin50	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634	158	0	0	98	12	10.91	-	-	-	T	147381070	G	T	147381070	4	4	275	1	0	0	0	0	0	1	0	0	6457	943	33	2	990	2	GJA8	1	147381070	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	684406	147381070	101869551	267	25954										
FCGR1A	0	genome.wustl.edu	37	chr1	149762904	149762904	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatacgtaaagaactgaaaaGaaagaaaaagtgggatttag	10	2	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	149762904	149762904	G	T	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	missense	c.956	p.R319I	0.786	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	234	0	0	112	13	10.4	-	-	-	T	149762904	G	T	149762904	3	4	275	1	0	0	0	0	1	0	0	0	5825	942	33	2	978	2	FCGR1A	1	149762904	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2381834	149762904	99487717	268	25955										
HIST2H3D	0	genome.wustl.edu	37	chr1	149784849	149784849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcccgctccccgcggatgcGgcgggccaactggatgtcct	15	16	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	149784849	149784849	G	A	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	missense	c.388	p.R130C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	119	0	0	50	15	23.08	-	-	-	A	149784849	G	A	149784849	3	1	275	1	0	0	0	0	1	0	0	0	7232	1116	39	1	24	1	HIST2H3D	1	149784849	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21945	149784849	99465772	269	25956										
OTUD7B	0	genome.wustl.edu	37	chr1	149916432	149916432	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcctgatactggtgacggTgacccatcttcagggttcca	10	13	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	149916432	149916432	T	C	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.1856	p.H619R	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	68	0	0	44	5	10.2	-	-	-	C	149916432	T	C	149916432	3	2	275	1	0	0	0	0	1	0	0	0	11392	1696	59	5	679	5	OTUD7B	1	149916432	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	131583	149916432	99334189	270	25957										
VPS45	0	genome.wustl.edu	37	chr1	150116911	150116911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagaggaagttctggcttcTggactgcacagccgaagcaa	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150116911	150116911	T	C	SNP	VPS45	ENST00000369128	human	ensembl	69_37n	1	known	missense	c.1429	p.W477R	0.985	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	220	0	0	120	52	29.89	-	-	-	C	150116911	T	C	150116911	3	2	275	1	0	0	0	0	1	0	0	0	17308	1567	55	5	1708	5	VPS45	1	150116911	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	200479	150116911	99133710	271	25958										
PLEKHO1	0	genome.wustl.edu	37	chr1	150123146	150123146	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcaccgcccgagaaggtCggctgggtccggaaattctg	14	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150123146	150123146	C	T	SNP	PLEKHO1	ENST00000369124	human	ensembl	69_37n	1	known	silent	c.75	p.V25	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902	240	0	0	98	19	16.1	-	-	-	T	150123146	C	T	150123146	2	4	275	1	0	0	0	0	0	0	0	1	12158	871	31	1		1	PLEKHO1	1	150123146	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6235	150123146	99127475	272	25959										
APH1A	0	genome.wustl.edu	37	chr1	150240037	150240037	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaagtaagaagccacttaGaacatgtggatatttagaga	11	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150240037	150240037	G	T	SNP	APH1A	ENST00000486720	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	APH1A	HGNC	ENSG00000117362	36	0	0	22	7	24.14	-	-	-	T	150240037	G	T	150240037	1	4	275	0	1	0	0	0	0	0	0	0	772	957	33	2		2	APH1A	1	150240037	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	116891	150240037	99010584	273	25960										
PRPF3	0	genome.wustl.edu	37	chr1	150318498	150318498	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttcccttctccagagttCgaaatttgagcaacccagcc	6	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150318498	150318498	C	T	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	nonsense	c.1645	p.R549*	1.000	pfam_DUF1115	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	PRPF3	HGNC	ENSG00000117360	120	0	0	120	31	20.26	-	-	-	T	150318498	C	T	150318498	4	4	275	1	0	0	0	0	0	1	0	0	12646	876	31	1	1691	1	PRPF3	1	150318498	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	78461	150318498	98932123	274	25961										
HORMAD1	0	genome.wustl.edu	37	chr1	150672639	150672639	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgattttctttggaagatttTactggttgatttccatttgc	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150672639	150672639	T	A	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	silent	c.1053	p.V351	0.980	NULL	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	519	0	0	393	56	12.39	-	-	-	A	150672639	T	A	150672639	2	1	275	1	0	0	0	0	0	0	0	1	7337	1741	61	5		5	HORMAD1	1	150672639	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	354141	150672639	98577982	275	25962										
HORMAD1	0	genome.wustl.edu	37	chr1	150676671	150676671	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacaaactaaacttggttCtgtaaaaaaaaaaaaaaaaa	3	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150676671	150676671	C	A	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	splice_site	c.872-1	e11-1	0.996	-	-	-	no_errors	HORMAD1	HGNC	ENSG00000143452	61	0	0	30	6	15.38	-	-	-	A	150676671	C	A	150676671	5	1	275	1	0	0	0	0	0	0	1	0	7337	927	32	2	329	2	HORMAD1	1	150676671	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4032	150676671	98573950	276	25963										
HORMAD1	0	genome.wustl.edu	37	chr1	150680816	150680816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattaggatataaatcttgcGaatgaggagaatgcttgctt	10	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150680816	150680816	G	A	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	missense	c.463	p.R155C	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	228	0	0	197	39	16.46	-	-	-	A	150680816	G	A	150680816	3	1	275	1	0	0	0	0	1	0	0	0	7337	1058	37	1	749	1	HORMAD1	1	150680816	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4145	150680816	98569805	277	25964										
HORMAD1	0	genome.wustl.edu	37	chr1	150680867	150680867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtagacaacatgctagattCgttgctttggtttttactag	9	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150680867	150680867	C	T	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	missense	c.412	p.E138K	0.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	209	0	0	145	44	23.28	-	-	-	T	150680867	C	T	150680867	3	4	275	1	0	0	0	0	1	0	0	0	7337	893	31	1	800	1	HORMAD1	1	150680867	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	51	150680867	98569754	278	25965										
SETDB1	0	genome.wustl.edu	37	chr1	150923291	150923291	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatagaacgctaccttttCgagactggctgtgacttcct	10	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	150923291	150923291	C	T	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	silent	c.1938	p.F646	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	324	0	0	247	28	10.18	-	-	-	T	150923291	C	T	150923291	2	4	275	1	0	0	0	0	0	0	0	1	14226	883	31	1		1	SETDB1	1	150923291	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	242424	150923291	98327330	279	25966										
TMOD4	0	genome.wustl.edu	37	chr1	151147252	151147252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggatccatctcctgtagttCgcagtccagctgctctagct	9	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151147252	151147252	C	T	SNP	TMOD4	ENST00000295314	human	ensembl	69_37n	-1	known	missense	c.100	p.E34K	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD4	HGNC	ENSG00000163157	271	0	0	131	42	24.14	-	-	-	T	151147252	C	T	151147252	3	4	275	1	0	0	0	0	1	0	0	0	16331	893	31	1	973	1	TMOD4	1	151147252	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	223961	151147252	98103369	280	25967										
PI4KB	0	genome.wustl.edu	37	chr1	151280248	151280248	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcgccatcagggacttgatGaattctctctcaggagccag	10	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151280248	151280248	G	T	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	missense	c.1020	p.F340L	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	148	1	0.67	123	21	14.48	-	-	-	T	151280248	G	T	151280248	3	4	275	1	0	0	0	0	1	0	0	0	11948	1281	45	2	1502	2	PI4KB	1	151280248	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	132996	151280248	97970373	281	25968										
POGZ	0	genome.wustl.edu	37	chr1	151377816	151377816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttctgacaagtgagtgCgatgacagtccatcacaagc	9	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151377816	151377816	C	T	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.3695	p.R1232H	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	217	0	0	322	36	10.03	-	-	-	T	151377816	C	T	151377816	3	4	275	1	0	0	0	0	1	0	0	0	12260	768	27	1	541	1	POGZ	1	151377816	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97568	151377816	97872805	282	25969										
CGN	0	genome.wustl.edu	37	chr1	151491301	151491301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagatttggaactccctgaGaacccctactctcaggtcaa	7	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151491301	151491301	G	T	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.306	p.E102D	0.972	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	106	0	0	83	17	17	-	-	-	T	151491301	G	T	151491301	3	4	275	1	0	0	0	0	1	0	0	0	3332	933	33	2	308	2	CGN	1	151491301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	113485	151491301	97759320	283	25970										
SNX27	0	genome.wustl.edu	37	chr1	151665461	151665461	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagggatggccttctgtttCgaatatgcacgaggagagaa	14	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151665461	151665461	C	T	SNP	SNX27	ENST00000368843	human	ensembl	69_37n	1	known	silent	c.1464	p.F488	0.997	NULL	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376	560	1	0.18	538	71	11.6	-	-	-	T	151665461	C	T	151665461	2	4	275	1	0	0	0	0	0	0	0	1	14986	883	31	1		1	SNX27	1	151665461	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	174160	151665461	97585160	284	25971										
OAZ3	0	genome.wustl.edu	37	chr1	151739680	151739680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacttgacactccagccccGttcctgcctccagtgctcct	8	18	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151739680	151739680	G	A	SNP	OAZ3	ENST00000315067	human	ensembl	69_37n	1	known	missense	c.74	p.R25H	0.967	NULL	pfam_ODC_AZ,superfamily_Acyl_CoA_acyltransferase	-	no_errors	OAZ3	HGNC	ENSG00000143450	185	0	0	98	32	24.43	-	-	-	A	151739680	G	A	151739680	3	1	275	1	0	0	0	0	1	0	0	0	10879	1145	40	1	251	1	OAZ3	1	151739680	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74219	151739680	97510941	285	25972										
TDRKH	0	genome.wustl.edu	37	chr1	151753992	151753992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttgccggccaatgatgaGtttcacagcctcctggggaa	11	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151753992	151753992	G	A	SNP	TDRKH	ENST00000368822	human	ensembl	69_37n	-1	known	missense	c.196	p.L66F	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134	199	0	0	141	23	13.94	-	-	-	A	151753992	G	A	151753992	3	1	275	1	0	0	0	0	1	0	0	0	15832	1029	36	4	1533	4	TDRKH	1	151753992	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14312	151753992	97496629	286	25973										
LINGO4	0	genome.wustl.edu	37	chr1	151774544	151774544	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcctcccaatatccagttCtctaagccttagggccacta	6	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	151774544	151774544	C	A	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	nonsense	c.637	p.E213*	0.964	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	76	0	0	26	7	21.21	-	-	-	A	151774544	C	A	151774544	4	1	275	1	0	0	0	0	0	1	0	0	8873	922	32	2	1148	2	LINGO4	1	151774544	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20552	151774544	97476077	287	25974										
TCHH	0	genome.wustl.edu	37	chr1	152082362	152082362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcagctcctcttcctcccGacattgcctctcccgctcct	5	21	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152082362	152082362	G	A	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3331	p.R1111W	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	637	2	0.31	316	58	14.99	-	-	-	A	152082362	G	A	152082362	3	1	275	1	0	0	0	0	1	0	0	0	15795	1057	37	1	2504	1	TCHH	1	152082362	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	307818	152082362	97168259	288	25975										
RPTN	0	genome.wustl.edu	37	chr1	152128201	152128201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccatagtgggaactctgGccttgtctgtctgtctgacc	11	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152128201	152128201	G	A	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	silent	c.1374	p.G458	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	1434	1	0.07	1172	203	14.7	-	-	-	A	152128201	G	A	152128201	2	1	275	1	0	0	0	0	0	0	0	1	13750	1190	42	4		4	RPTN	1	152128201	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45839	152128201	97122420	289	25976										
RPTN	0	genome.wustl.edu	37	chr1	152129395	152129395	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatctcggtcttgatctaaGaggttcaagatggtttccac	9	10	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152129395	152129395	G	T	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	silent	c.180	p.L60	0.944	pfscan_EF_HAND_2	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	280	0	0	286	45	13.6	-	-	-	T	152129395	G	T	152129395	2	4	275	1	0	0	0	0	0	0	0	1	13750	929	33	2		2	RPTN	1	152129395	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1194	152129395	97121226	290	25977										
HRNR	0	genome.wustl.edu	37	chr1	152192930	152192930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaagactgacgtgagctgGagccatgttggccagagctt	15	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152192930	152192930	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.1175	p.S392Y	0.003	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	69	0	0	40	10	20	-	-	-	T	152192930	G	T	152192930	3	4	275	1	0	0	0	0	1	0	0	0	7410	1174	41	2	7381	2	HRNR	1	152192930	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	63535	152192930	97057691	291	25978										
FLG	0	genome.wustl.edu	37	chr1	152280892	152280892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgtccagacctatctaccGattgctcttggtgggacccc	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152280892	152280892	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.6470	p.S2157L	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	447	0	0	264	49	15.46	-	-	-	A	152280892	G	A	152280892	3	1	275	1	0	0	0	0	1	0	0	0	5968	1059	37	1	5719	1	FLG	1	152280892	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	87962	152280892	96969729	292	25979										
FLG	0	genome.wustl.edu	37	chr1	152283546	152283546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctctcactgtcactgtcCtggctaacactggatccctg	8	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152283546	152283546	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3816	p.Q1272H	0.001	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	276	0	0	170	51	23.08	-	-	-	A	152283546	C	A	152283546	3	1	275	1	0	0	0	0	1	0	0	0	5968	680	24	4	8373	4	FLG	1	152283546	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2654	152283546	96967075	293	25980										
CRNN	0	genome.wustl.edu	37	chr1	152384674	152384674	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatagcgcctgaaggcctcGatgatcccattaatgttttg	10	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	152384674	152384674	G	A	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	silent	c.36	p.I12	0.972	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	188	0	0	85	27	23.89	-	-	-	A	152384674	G	A	152384674	2	1	275	1	0	0	0	0	0	0	0	1	3922	1048	37	1		1	CRNN	1	152384674	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101128	152384674	96865947	294	25981										
SPRR2B	0	genome.wustl.edu	37	chr1	153043216	153043216	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttggtggtgggcagggctCagggcacttcgggggtggac	20	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153043216	153043216	C	A	SNP	SPRR2B	ENST00000341611	human	ensembl	69_37n	-1	known	nonsense	c.100	p.E34*	0.458	NULL	NULL	-	no_errors	SPRR2B	HGNC	ENSG00000196805	605	0	0	420	57	11.95	-	-	-	A	153043216	C	A	153043216	4	1	275	1	0	0	0	0	0	1	0	0	15189	835	29	2	122	2	SPRR2B	1	153043216	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	658542	153043216	96207405	295	25982										
INTS3	0	genome.wustl.edu	37	chr1	153733389	153733389	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacattgtggagaaacgggtCttggcgtaaggaatttggtg	15	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153733389	153733389	C	A	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	silent	c.1404	p.V468	1.000	pfam_Integrator_3	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	241	0	0	144	21	12.73	-	-	-	A	153733389	C	A	153733389	2	1	275	1	0	0	0	0	0	0	0	1	7833	900	32	2		2	INTS3	1	153733389	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	690173	153733389	95517232	296	25983										
INTS3	0	genome.wustl.edu	37	chr1	153742293	153742293	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggtaacctggttatgtttCgaaaagactcagttctcaac	9	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153742293	153742293	C	T	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	nonsense	c.2362	p.R788*	1.000	NULL	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	145	0	0	85	14	14.14	-	-	-	T	153742293	C	T	153742293	4	4	275	1	0	0	0	0	0	1	0	0	7833	876	31	1	2452	1	INTS3	1	153742293	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8904	153742293	95508328	297	25984										
DENND4B	0	genome.wustl.edu	37	chr1	153914409	153914409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaaggtgaggaaggcgcGgaaggcagggaaggcaggcc	21	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153914409	153914409	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.991	p.R331C	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	25	0	0	18	7	28	-	-	-	A	153914409	G	A	153914409	3	1	275	1	0	0	0	0	1	0	0	0	4470	1116	39	1	3591	1	DENND4B	1	153914409	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	172116	153914409	95336212	298	25985										
SLC39A1	0	genome.wustl.edu	37	chr1	153935178	153935178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaccaggagctctggctctCcccagggccccatgatgctt	10	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153935178	153935178	C	T	SNP	SLC39A1	ENST00000310483	human	ensembl	69_37n	-1	known	missense	c.14	p.G5E	0.989	NULL	pfam_ZIP	-	no_errors	SLC39A1	HGNC	ENSG00000143570	70	0	0	27	7	20.59	-	-	-	T	153935178	C	T	153935178	3	4	275	1	0	0	0	0	1	0	0	0	14701	855	30	2	972	2	SLC39A1	1	153935178	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20769	153935178	95315443	299	25986										
NUP210L	0	genome.wustl.edu	37	chr1	153965403	153965404	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggggagaacttgtggagttINSaaaaaaacctagaagaagag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153965403	153965404	-	A	INS	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5575_5574	p.N1858fs	0.000:0.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	153	0	0	92	11	10.68	-	-	-	A	153965404	-	A	153965403	7	5	275	1	0	1	1	0	0	0	0	0	10834	1754	61	0	95	0	NUP210L	1	153965403	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	30225	153965403	95285218	300	25987										
NUP210L	0	genome.wustl.edu	37	chr1	153994646	153994646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagcagatgatatctccaAcaaaggtaagcttggtgtct	10	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	153994646	153994646	A	G	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.4472	p.V1491A	0.997	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	105	0	0	91	27	22.88	-	-	-	G	153994646	A	G	153994646	3	3	275	1	0	0	0	0	1	0	0	0	10834	43	2	5	1230	5	NUP210L	1	153994646	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	29243	153994646	95255975	301	25988										
NUP210L	0	genome.wustl.edu	37	chr1	154112300	154112300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagaatggttcatgaattCgaacttttacaacagcagca	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154112300	154112300	C	T	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.695	p.R232Q	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	341	0	0	291	37	11.21	-	-	-	T	154112300	C	T	154112300	3	4	275	1	0	0	0	0	1	0	0	0	10834	884	31	1	5115	1	NUP210L	1	154112300	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117654	154112300	95138321	302	25989										
C1orf43	0	genome.wustl.edu	37	chr1	154187026	154187026	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcctgaaccctggagagtcGaatatcaatctcctctttca	6	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154187026	154187026	G	A	SNP	C1orf43	ENST00000368521	human	ensembl	69_37n	-1	known	nonsense	c.193	p.R65*	0.998	pfam_NICE-3_prd	pfam_NICE-3_prd	-	no_errors	C1orf43	HGNC	ENSG00000143612	140	0	0	108	33	23.08	-	-	-	A	154187026	G	A	154187026	4	1	275	1	0	0	0	0	0	1	0	0	2060	1066	37	1	588	1	C1orf43	1	154187026	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74726	154187026	95063595	303	25990										
IL6R	0	genome.wustl.edu	37	chr1	154407479	154407479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccacagtgcagcctgatccGcctgccaacatcacagtcac	7	18	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154407479	154407479	G	A	SNP	IL6R	ENST00000476006	human	ensembl	69_37n	1	novel	missense	c.422	p.R141H	0.027	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IL6R	HGNC	ENSG00000160712	66	0	0	23	16	40	-	-	-	A	154407479	G	A	154407479	3	1	275	1	0	0	0	0	1	0	0	0	7756	1074	38	1	672	1	IL6R	1	154407479	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	220453	154407479	94843142	304	25991										
UBE2Q1	0	genome.wustl.edu	37	chr1	154524926	154524926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagactgtcattcacgagttCgactgcatagtttcctggaa	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154524926	154524926	C	T	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	missense	c.829	p.E277K	1.000	superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	199	0	0	130	19	12.75	-	-	-	T	154524926	C	T	154524926	3	4	275	1	0	0	0	0	1	0	0	0	16966	893	31	1	467	1	UBE2Q1	1	154524926	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117447	154524926	94725695	305	25992										
CHRNB2	0	genome.wustl.edu	37	chr1	154548273	154548273	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtacgtcgccatggtgatCgaccgcctcttcctctggat	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154548273	154548273	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	silent	c.1374	p.I458	0.995	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	221	0	0	122	58	32.22	-	-	-	T	154548273	C	T	154548273	2	4	275	1	0	0	0	0	0	0	0	1	3420	874	31	1		1	CHRNB2	1	154548273	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23347	154548273	94702348	306	25993										
ADAR	0	genome.wustl.edu	37	chr1	154557486	154557486	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaatagaagaaaaatgttCtttttggagacccgggacaa	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154557486	154557486	C	A	SNP	ADAR	ENST00000292205	human	ensembl	69_37n	-1	known	missense	c.3606	p.K1202N	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	82	0	0	66	8	10.81	-	-	-	A	154557486	C	A	154557486	3	1	275	1	0	0	0	0	1	0	0	0	281	912	32	2	207	2	ADAR	1	154557486	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9213	154557486	94693135	307	25994										
FLAD1	0	genome.wustl.edu	37	chr1	154956392	154956392	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacctggcaggccccccgtgCttgcgacccctatttggggg	14	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	154956392	154956392	C	A	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	nonsense	c.222	p.C74*	0.031	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	186	0	0	129	22	14.57	-	-	-	A	154956392	C	A	154956392	4	1	275	1	0	0	0	0	0	1	0	0	5966	805	28	4	224	4	FLAD1	1	154956392	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	398906	154956392	94294229	308	25995										
DCST1	0	genome.wustl.edu	37	chr1	155020368	155020368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttacaggcttttggctaccGactccggagggtcatcgcag	13	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155020368	155020368	G	A	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	missense	c.1718	p.R573Q	1.000	pfam_DC_STAMP-like	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	262	0	0	133	56	29.47	-	-	-	A	155020368	G	A	155020368	3	1	275	1	0	0	0	0	1	0	0	0	4333	1058	37	1	1772	1	DCST1	1	155020368	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	63976	155020368	94230253	309	25996										
KRTCAP2	0	genome.wustl.edu	37	chr1	155144934	155144934	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagacagcttcagtaaataTatttctccttaacaaccttt	3	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155144934	155144934	T	G	SNP	KRTCAP2	ENST00000463527	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KRTCAP2	HGNC	ENSG00000163463	55	0	0	36	18	33.33	-	-	-	G	155144934	T	G	155144934	1	3	275	0	1	0	0	0	0	0	0	0	8632	1421	49	5		5	KRTCAP2	1	155144934	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	124566	155144934	94105687	310	25997										
CLK2	0	genome.wustl.edu	37	chr1	155240677	155240677	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacttgaccaggagcgacttCttcgtcgcttatgctttcgg	10	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155240677	155240677	C	A	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.92	p.R31I	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	91	0	0	71	25	26.04	-	-	-	A	155240677	C	A	155240677	3	1	275	1	0	0	0	0	1	0	0	0	3567	913	32	2	1452	2	CLK2	1	155240677	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	95743	155240677	94009944	311	25998										
ASH1L	0	genome.wustl.edu	37	chr1	155448823	155448823	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctggatcctgtctatttcGaagctggggatatttctttt	10	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155448823	155448823	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	nonsense	c.3838	p.R1280*	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	162	0	0	122	49	28.65	-	-	-	A	155448823	G	A	155448823	4	1	275	1	0	0	0	0	0	1	0	0	1045	1066	37	1	5160	1	ASH1L	1	155448823	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	208146	155448823	93801798	312	25999										
ASH1L	0	genome.wustl.edu	37	chr1	155448984	155448984	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagagaaacatgctcaaaaGaatgcctcctctttttttgc	6	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155448984	155448984	G	T	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.3677	p.S1226Y	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	412	0	0	289	107	27.02	-	-	-	T	155448984	G	T	155448984	3	4	275	1	0	0	0	0	1	0	0	0	1045	942	33	2	5321	2	ASH1L	1	155448984	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161	155448984	93801637	313	26000										
ASH1L	0	genome.wustl.edu	37	chr1	155450884	155450884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagattcagaaatttcttCgattagttctgtagtagaac	7	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155450884	155450884	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1777	p.E593K	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	110	0	0	91	18	16.51	-	-	-	T	155450884	C	T	155450884	3	4	275	1	0	0	0	0	1	0	0	0	1045	893	31	1	7221	1	ASH1L	1	155450884	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1900	155450884	93799737	314	26001										
GON4L	0	genome.wustl.edu	37	chr1	155735158	155735158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtctgtttcgttacttctCcagcactgctcaactcctcg	6	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155735158	155735158	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.4106	p.G1369E	0.001	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	84	0	0	57	19	25	-	-	-	T	155735158	C	T	155735158	3	4	275	1	0	0	0	0	1	0	0	0	6621	855	30	2	2781	2	GON4L	1	155735158	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	284274	155735158	93515463	315	26002										
GON4L	0	genome.wustl.edu	37	chr1	155743018	155743018	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcgctataagaaaataaatCtcggataaatcaacttctag	5	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155743018	155743018	C	A	SNP	GON4L	ENST00000497369	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	316	0	0	220	86	28.1	-	-	-	A	155743018	C	A	155743018	1	1	275	0	1	0	0	0	0	0	0	0	6621	928	32	2		2	GON4L	1	155743018	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7860	155743018	93507603	316	26003										
GON4L	0	genome.wustl.edu	37	chr1	155754071	155754071	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggatggctattatgccaaGaaagaagtcattcaaccagt	10	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	155754071	155754071	G	T	SNP	GON4L	ENST00000466224	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	22	0	0	20	4	16.67	-	-	-	T	155754071	G	T	155754071	1	4	275	0	1	0	0	0	0	0	0	0	6621	957	33	2		2	GON4L	1	155754071	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11053	155754071	93496550	317	26004										
UBQLN4	0	genome.wustl.edu	37	chr1	156012655	156012655	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgcatcagctgggggttCtcagagatctgctggaggag	15	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156012655	156012655	C	A	SNP	UBQLN4	ENST00000368309	human	ensembl	69_37n	-1	known	missense	c.1176	p.E392D	1.000	NULL	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803	346	0	0	253	42	14.24	-	-	-	A	156012655	C	A	156012655	3	1	275	1	0	0	0	0	1	0	0	0	16996	912	32	2	649	2	UBQLN4	1	156012655	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	258584	156012655	93237966	318	26005										
RAB25	0	genome.wustl.edu	37	chr1	156038027	156038027	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggtccaatgcctctgatCgtatctctgtccatccttct	7	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156038027	156038027	C	T	SNP	RAB25	ENST00000497968	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAB25	HGNC	ENSG00000132698	67	0	0	76	13	14.61	-	-	-	T	156038027	C	T	156038027	1	4	275	0	1	0	0	0	0	0	0	0	12995	899	31	1		1	RAB25	1	156038027	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25372	156038027	93212594	319	26006										
GPATCH4	0	genome.wustl.edu	37	chr1	156566011	156566011	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattccttcaacactgaattCttgttcaggacctggcactt	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156566011	156566011	C	A	SNP	GPATCH4	ENST00000497287	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	GPATCH4	HGNC	ENSG00000160818	64	0	0	74	13	14.94	-	-	-	A	156566011	C	A	156566011	1	1	275	0	1	0	0	0	0	0	0	0	6643	928	32	2		2	GPATCH4	1	156566011	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	527984	156566011	92684610	320	26007										
GPATCH4	0	genome.wustl.edu	37	chr1	156566041	156566041	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggcactttttgaggtaCtagggatacaaagattagta	10	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156566041	156566041	C	A	SNP	GPATCH4	ENST00000497287	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	GPATCH4	HGNC	ENSG00000160818	61	0	0	47	23	32.86	-	-	-	A	156566041	C	A	156566041	5	1	275	1	0	0	0	0	0	0	1	0	6643	580	20	4		4	GPATCH4	1	156566041	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30	156566041	92684580	321	26008										
NES	0	genome.wustl.edu	37	chr1	156641546	156641546	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgcctctacgctctcttCtttgagtgactttaagaact	6	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156641546	156641546	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.2434	p.E812K	0.004	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	44	0	0	32	4	11.11	-	-	-	T	156641546	C	T	156641546	3	4	275	1	0	0	0	0	1	0	0	0	10409	922	32	2	2435	2	NES	1	156641546	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75505	156641546	92609075	322	26009										
NES	0	genome.wustl.edu	37	chr1	156642067	156642067	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctagattaccttcaagaGatttcattagttcttgattc	5	8	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156642067	156642067	G	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.1913	p.S638Y	0.090	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	15	0	0	12	7	36.84	-	-	-	T	156642067	G	T	156642067	3	4	275	1	0	0	0	0	1	0	0	0	10409	942	33	2	2956	2	NES	1	156642067	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	521	156642067	92608554	323	26010										
ISG20L2	0	genome.wustl.edu	37	chr1	156696974	156696974	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatgagcttgggtggagttCtgtggggcattcttctgagg	17	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156696974	156696974	C	A	SNP	ISG20L2	ENST00000313146	human	ensembl	69_37n	-1	known	missense	c.471	p.Q157H	0.062	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319	99	0	0	51	9	15	-	-	-	A	156696974	C	A	156696974	3	1	275	1	0	0	0	0	1	0	0	0	7909	912	32	2	602	2	ISG20L2	1	156696974	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	54907	156696974	92553647	324	26011										
PRCC	0	genome.wustl.edu	37	chr1	156756495	156756495	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctcctgccccatgccttCtcccgcaaaccctcggatgg	8	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	156756495	156756495	C	T	SNP	PRCC	ENST00000271526	human	ensembl	69_37n	1	known	silent	c.612	p.F204	1.000	NULL	pfam_PRCC_C	-	no_errors	PRCC	HGNC	ENSG00000143294	358	0	0	216	72	25	-	-	-	T	156756495	C	T	156756495	2	4	275	1	0	0	0	0	0	0	0	1	12528	912	32	2		2	PRCC	1	156756495	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59521	156756495	92494126	325	26012										
FCRL5	0	genome.wustl.edu	37	chr1	157494345	157494345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggatgggacgagatactgGaactgagggaggaaaaacgt	17	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	157494345	157494345	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1963	p.P655S	1.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	228	0	0	162	19	10.5	-	-	-	A	157494345	G	A	157494345	3	1	275	1	0	0	0	0	1	0	0	0	5844	1174	41	2	1002	2	FCRL5	1	157494345	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	737850	157494345	91756276	326	26013										
FCRL3	0	genome.wustl.edu	37	chr1	157667004	157667004	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctccacctcacaccagtaaGaccctgagtcttcagtccac	5	17	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	157667004	157667004	G	T	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	missense	c.770	p.S257Y	0.003	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	175	0	0	116	45	27.95	-	-	-	T	157667004	G	T	157667004	3	4	275	1	0	0	0	0	1	0	0	0	5842	942	33	2	1474	2	FCRL3	1	157667004	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	172659	157667004	91583617	327	26014										
FCRL2	0	genome.wustl.edu	37	chr1	157740422	157740422	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaacgatgctgtctccttcGaagacagaagagggcgccac	12	11	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	157740422	157740422	G	A	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	silent	c.87	p.F29	0.734	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	137	0	0	82	16	16.33	-	-	-	A	157740422	G	A	157740422	2	1	275	1	0	0	0	0	0	0	0	1	5841	1049	37	1		1	FCRL2	1	157740422	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	73418	157740422	91510199	328	26015										
CD1D	0	genome.wustl.edu	37	chr1	158151448	158151448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacgctgcagcatatatttCgggtttatcgaagcagcttc	10	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158151448	158151448	C	T	SNP	CD1D	ENST00000368171	human	ensembl	69_37n	1	known	missense	c.265	p.R89W	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1D	HGNC	ENSG00000158473	93	0	0	31	10	23.81	-	-	-	T	158151448	C	T	158151448	3	4	275	1	0	0	0	0	1	0	0	0	3006	875	31	1	271	1	CD1D	1	158151448	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	411026	158151448	91099173	329	26016										
CD1E	0	genome.wustl.edu	37	chr1	158323809	158323809	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcctcctcttcgagggtCtctgctgtcctggggaaaat	11	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158323809	158323809	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	missense	c.31	p.L11F	0.001	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	432	0	0	244	67	21.47	-	-	-	T	158323809	C	T	158323809	3	4	275	1	0	0	0	0	1	0	0	0	3007	913	32	2	33	2	CD1E	1	158323809	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	172361	158323809	90926812	330	26017										
OR10K2	0	genome.wustl.edu	37	chr1	158389950	158389950	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacacaggtagaaaaagctTtgcacctacccagtgtggaa	9	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158389950	158389950	T	G	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	missense	c.707	p.K236T	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	439	0	0	302	53	14.93	-	-	-	G	158389950	T	G	158389950	3	3	275	1	0	0	0	0	1	0	0	0	10987	1841	64	5	233	5	OR10K2	1	158389950	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	66141	158389950	90860671	331	26018										
OR10R2	0	genome.wustl.edu	37	chr1	158449842	158449842	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttctgtatctagtcattCttagtggcaatgtcaccatt	6	8	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158449842	158449842	C	A	SNP	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	missense	c.175	p.L59I	0.992	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	438	0	0	385	61	13.65	-	-	-	A	158449842	C	A	158449842	3	1	275	1	0	0	0	0	1	0	0	0	10990	913	32	2	177	2	OR10R2	1	158449842	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59892	158449842	90800779	332	26019										
MNDA	0	genome.wustl.edu	37	chr1	158811961	158811961	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatggtgaatgaatacaaGaaaattcttttgctgaaagg	10	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158811961	158811961	G	T	SNP	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	missense	c.18	p.K6N	0.021	pfam_DAPIN,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	130	0	0	101	17	14.41	-	-	-	T	158811961	G	T	158811961	3	4	275	1	0	0	0	0	1	0	0	0	9748	933	33	2	20	2	MNDA	1	158811961	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	362119	158811961	90438660	333	26020										
MNDA	0	genome.wustl.edu	37	chr1	158815476	158815476	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaagcaacagcgccatttAaatacgagtccccagaaaat	7	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	158815476	158815476	A	C	SNP	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	missense	c.670	p.K224Q	0.014	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	211	0	0	190	31	14.03	-	-	-	C	158815476	A	C	158815476	3	2	275	1	0	0	0	0	1	0	0	0	9748	363	13	5	684	5	MNDA	1	158815476	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3515	158815476	90435145	334	26021										
OR10J1	0	genome.wustl.edu	37	chr1	159409813	159409813	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtatatacattggtcattCtcccaagaatgctctccagc	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	159409813	159409813	C	A	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	missense	c.265	p.L89I	0.582	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	96	0	0	99	36	26.67	-	-	-	A	159409813	C	A	159409813	3	1	275	1	0	0	0	0	1	0	0	0	10983	913	32	2	267	2	OR10J1	1	159409813	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	594337	159409813	89840808	335	26022										
SLAMF8	0	genome.wustl.edu	37	chr1	159802730	159802730	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggatgctcagccctccaaGacctgccaggttttcttgtc	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	159802730	159802730	G	T	SNP	SLAMF8	ENST00000289707	human	ensembl	69_37n	1	known	missense	c.432	p.K144N	0.030	pfscan_Ig-like	pfscan_Ig-like	-	no_errors	SLAMF8	HGNC	ENSG00000158714	177	0	0	191	24	11.16	-	-	-	T	159802730	G	T	159802730	3	4	275	1	0	0	0	0	1	0	0	0	14459	933	33	2	442	2	SLAMF8	1	159802730	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	392917	159802730	89447891	336	26023										
C1orf204	0	genome.wustl.edu	37	chr1	159810654	159810654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttattcttctggaggctgCgtctagaaaggacaagccta	10	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	159810654	159810654	C	T	SNP	C1orf204	ENST00000368102	human	ensembl	69_37n	-1	novel	missense	c.445	p.A149T	0.000	NULL	NULL	-	no_errors	C1orf204	HGNC	ENSG00000188004	56	0	0	62	11	15.07	-	-	-	T	159810654	C	T	159810654	3	4	275	1	0	0	0	0	1	0	0	0	2047	768	27	1	270	1	C1orf204	1	159810654	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7924	159810654	89439967	337	26024										
IGSF9	0	genome.wustl.edu	37	chr1	159898376	159898376	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtccccatccacattcatCtctcggaagaagggcaggct	9	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	159898376	159898376	C	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	missense	c.2802	p.E934D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	164	0	0	78	11	12.36	-	-	-	A	159898376	C	A	159898376	3	1	275	1	0	0	0	0	1	0	0	0	7659	912	32	2	749	2	IGSF9	1	159898376	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	87722	159898376	89352245	338	26025										
IGSF9	0	genome.wustl.edu	37	chr1	159901700	159901700	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atattcttccttgggccgctCtataaaagctgggggagcct	11	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	159901700	159901700	C	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	nonsense	c.1264	p.E422*	0.939	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	260	0	0	126	46	26.74	-	-	-	A	159901700	C	A	159901700	4	1	275	1	0	0	0	0	0	1	0	0	7659	922	32	2	2319	2	IGSF9	1	159901700	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3324	159901700	89348921	339	26026										
ATP1A2	0	genome.wustl.edu	37	chr1	160093110	160093110	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttctgccgtcagcttttCggggggttctccatcctgct	11	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160093110	160093110	C	T	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	silent	c.285	p.F95	0.977	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	234	0	0	145	40	21.39	-	-	-	T	160093110	C	T	160093110	2	4	275	1	0	0	0	0	0	0	0	1	1133	883	31	1		1	ATP1A2	1	160093110	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	191410	160093110	89157511	340	26027										
COPA	0	genome.wustl.edu	37	chr1	160259952	160259952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacacaaagggggccttagcGaaactgcagaggactgatcc	12	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160259952	160259952	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.3697	p.R1233C	1.000	pfam_Coatomer_asu_C	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	347	0	0	283	44	13.41	-	-	-	A	160259952	G	A	160259952	3	1	275	1	0	0	0	0	1	0	0	0	3757	1058	37	1	8	1	COPA	1	160259952	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166842	160259952	88990669	341	26028										
COPA	0	genome.wustl.edu	37	chr1	160261861	160261861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacactgagaaggatggaacGgaatttttccacagcctcct	9	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160261861	160261861	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.3115	p.R1039C	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	331	0	0	238	80	25.16	-	-	-	A	160261861	G	A	160261861	3	1	275	1	0	0	0	0	1	0	0	0	3757	1116	39	1	606	1	COPA	1	160261861	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1909	160261861	88988760	342	26029										
VANGL2	0	genome.wustl.edu	37	chr1	160389056	160389056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggcctcttcatctctgtcGccttcaagctgctcatcctg	8	15	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160389056	160389056	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.457	p.A153T	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	144	0	0	77	11	12.36	-	-	-	A	160389056	G	A	160389056	3	1	275	1	0	0	0	0	1	0	0	0	17217	1087	38	1	467	1	VANGL2	1	160389056	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	127195	160389056	88861565	343	26030										
CD84	0	genome.wustl.edu	37	chr1	160523176	160523176	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaaatcctaccttgtcttCtcttgaacaaacggaacaaa	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160523176	160523176	C	A	SNP	CD84	ENST00000311224	human	ensembl	69_37n	-1	known	missense	c.752	p.R251I	0.462	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD84	HGNC	ENSG00000066294	214	0	0	131	29	18.12	-	-	-	A	160523176	C	A	160523176	3	1	275	1	0	0	0	0	1	0	0	0	3071	913	32	2	305	2	CD84	1	160523176	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134120	160523176	88727445	344	26031										
CD48	0	genome.wustl.edu	37	chr1	160654720	160654720	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattcttgctcattcccagtCtttttcaacaccctcatgat	3	14	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160654720	160654720	C	A	SNP	CD48	ENST00000368046	human	ensembl	69_37n	-1	known	missense	c.342	p.K114N	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD48	HGNC	ENSG00000117091	181	0	0	129	15	10.42	-	-	-	A	160654720	C	A	160654720	3	1	275	1	0	0	0	0	1	0	0	0	3049	912	32	2	401	2	CD48	1	160654720	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131544	160654720	88595901	345	26032										
LY9	0	genome.wustl.edu	37	chr1	160786632	160786632	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaggagttcccaccagtttCtttctgagaacatctgttca	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160786632	160786632	C	A	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.1321	p.L441I	0.004	pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	186	1	0.53	125	44	26.04	-	-	-	A	160786632	C	A	160786632	3	1	275	1	0	0	0	0	1	0	0	0	9168	913	32	2	1471	2	LY9	1	160786632	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131912	160786632	88463989	346	26033										
ITLN1	0	genome.wustl.edu	37	chr1	160846493	160846493	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagctgcctcagttatctcAcggctgctgctgtaaccaac	8	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160846493	160846493	A	G	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	silent	c.903	p.R301	0.379	NULL	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	320	0	0	217	37	14.57	-	-	-	G	160846493	A	G	160846493	2	3	275	1	0	0	0	0	0	0	0	1	7964	146	6	5		5	ITLN1	1	160846493	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	59861	160846493	88404128	347	26034										
ITLN2	0	genome.wustl.edu	37	chr1	160917802	160917802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attaaacacccggaactgaaCgaatcctgcaacaaattccc	5	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160917802	160917802	C	T	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	missense	c.742	p.V248I	0.936	superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	170	0	0	121	45	26.95	-	-	-	T	160917802	C	T	160917802	3	4	275	1	0	0	0	0	1	0	0	0	7965	536	19	1	243	1	ITLN2	1	160917802	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71309	160917802	88332819	348	26035										
ITLN2	0	genome.wustl.edu	37	chr1	160920404	160920404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccagtgttggtgcggtacCtcagcagggcgctgtttctc	14	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	160920404	160920404	C	A	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	missense	c.539	p.R180M	1.000	superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	236	0	0	195	29	12.95	-	-	-	A	160920404	C	A	160920404	3	1	275	1	0	0	0	0	1	0	0	0	7965	681	24	4	454	4	ITLN2	1	160920404	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2602	160920404	88330217	349	26036										
USP21	0	genome.wustl.edu	37	chr1	161132851	161132851	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaggggctctgctagaaGaacctgagttaaggtaaggg	17	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161132851	161132851	G	T	SNP	USP21	ENST00000289865	human	ensembl	69_37n	1	known	nonsense	c.1036	p.E346*	0.999	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	305	0	0	156	38	19.59	-	-	-	T	161132851	G	T	161132851	4	4	275	1	0	0	0	0	0	1	0	0	17150	943	33	2	1054	2	USP21	1	161132851	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	212447	161132851	88117770	350	26037										
USP21	0	genome.wustl.edu	37	chr1	161133388	161133388	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggaaacgttacctggagCgagaggacagcaagattgtg	15	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161133388	161133388	C	T	SNP	USP21	ENST00000289865	human	ensembl	69_37n	1	known	nonsense	c.1093	p.R365*	0.989	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	454	2	0.44	259	40	13.38	-	-	-	T	161133388	C	T	161133388	4	4	275	1	0	0	0	0	0	1	0	0	17150	760	27	1	1115	1	USP21	1	161133388	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	537	161133388	88117233	351	26038										
PPOX	0	genome.wustl.edu	37	chr1	161139450	161139450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgttttcatgctctcagGtatctctaagggacagcagt	9	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161139450	161139450	G	A	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	missense	c.808	p.V270I	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	127	0	0	90	14	13.46	-	-	-	A	161139450	G	A	161139450	3	1	275	1	0	0	0	0	1	0	0	0	12425	1275	44	4	834	4	PPOX	1	161139450	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6062	161139450	88111171	352	26039										
B4GALT3	0	genome.wustl.edu	37	chr1	161145756	161145756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatagggcactgagacttCggaagccccccagtgacagg	12	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161145756	161145756	C	T	SNP	B4GALT3	ENST00000319769	human	ensembl	69_37n	-1	known	missense	c.95	p.R32Q	0.998	NULL	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT3	HGNC	ENSG00000158850	206	0	0	113	43	27.39	-	-	-	T	161145756	C	T	161145756	3	4	275	1	0	0	0	0	1	0	0	0	1276	884	31	1	1110	1	B4GALT3	1	161145756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6306	161145756	88104865	353	26040										
NDUFS2	0	genome.wustl.edu	37	chr1	161173234	161173234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgactccccagaggtgttCggcagtggcagccagatgtg	14	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161173234	161173234	C	T	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.103	p.R35W	1.000	NULL	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	118	0	0	90	24	21.05	-	-	-	T	161173234	C	T	161173234	3	4	275	1	0	0	0	0	1	0	0	0	10364	875	31	1	109	1	NDUFS2	1	161173234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27478	161173234	88077387	354	26041										
NDUFS2	0	genome.wustl.edu	37	chr1	161183978	161183978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtatttggagaagtagatCggtgagcaggggagcagcgt	17	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161183978	161183978	C	T	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.1387	p.R463W	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	362	0	0	362	47	11.49	-	-	-	T	161183978	C	T	161183978	3	4	275	1	0	0	0	0	1	0	0	0	10364	875	31	1	1461	1	NDUFS2	1	161183978	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10744	161183978	88066643	355	26042										
ATF6	0	genome.wustl.edu	37	chr1	161928323	161928323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcctccatatcaaaagttCgtcagttcctccttacctcc	4	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161928323	161928323	C	T	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	missense	c.1892	p.S631L	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	97	0	0	80	19	19	-	-	-	T	161928323	C	T	161928323	3	4	275	1	0	0	0	0	1	0	0	0	1088	893	31	1	1954	1	ATF6	1	161928323	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	744345	161928323	87322298	356	26043										
OLFML2B	0	genome.wustl.edu	37	chr1	161953617	161953617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgtgttggtgtgggtgtCgaaagcgtaggagatgttgg	19	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161953617	161953617	C	T	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.2101	p.D701N	1.000	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	689	0	0	426	62	12.68	-	-	-	T	161953617	C	T	161953617	3	4	275	1	0	0	0	0	1	0	0	0	10931	884	31	1	155	1	OLFML2B	1	161953617	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25294	161953617	87297004	357	26044										
OLFML2B	0	genome.wustl.edu	37	chr1	161953982	161953982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatgttgcgggtgaaggcgCgattgtagtagaaggcgcca	17	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	161953982	161953982	C	T	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.1736	p.R579H	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	120	0	0	70	19	21.35	-	-	-	T	161953982	C	T	161953982	3	4	275	1	0	0	0	0	1	0	0	0	10931	768	27	1	520	1	OLFML2B	1	161953982	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	365	161953982	87296639	358	26045										
NOS1AP	0	genome.wustl.edu	37	chr1	162326798	162326798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcctcacccaggatgctgCtcccttcttcttcctcgaag	7	17	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	162326798	162326798	C	T	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	missense	c.811	p.L271F	0.990	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	64	0	0	37	7	15.56	-	-	-	T	162326798	C	T	162326798	3	4	275	1	0	0	0	0	1	0	0	0	10614	797	28	4	841	4	NOS1AP	1	162326798	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	372816	162326798	86923823	359	26046										
UAP1	0	genome.wustl.edu	37	chr1	162557426	162557426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaacattgccaaccatttCttcactgtaccatttctgag	7	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	162557426	162557426	C	A	SNP	UAP1	ENST00000271469	human	ensembl	69_37n	1	known	missense	c.996	p.F332L	1.000	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143	265	0	0	229	30	11.58	-	-	-	A	162557426	C	A	162557426	3	1	275	1	0	0	0	0	1	0	0	0	16922	912	32	2	1014	2	UAP1	1	162557426	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	230628	162557426	86693195	360	26047										
FAM78B	0	genome.wustl.edu	37	chr1	166135249	166135249	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcgctgtaggtgttgaaGaactccatctgattgcacgc	12	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	166135249	166135249	G	T	SNP	FAM78B	ENST00000338353	human	ensembl	69_37n	-1	known	missense	c.237	p.F79L	1.000	NULL	NULL	-	no_errors	FAM78B	HGNC	ENSG00000188859	27	0	0	7	3	30	-	-	-	T	166135249	G	T	166135249	3	4	275	1	0	0	0	0	1	0	0	0	5672	933	33	2	556	2	FAM78B	1	166135249	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3577823	166135249	83115372	361	26048										
DCAF6	0	genome.wustl.edu	37	chr1	168037611	168037611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaggttataactcgaaacGaactcatgctggaagaaact	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	168037611	168037611	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.2701	p.E901K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	334	2	0.6	278	40	12.58	-	-	-	A	168037611	G	A	168037611	3	1	275	1	0	0	0	0	1	0	0	0	4306	1059	37	1	2562	1	DCAF6	1	168037611	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1902362	168037611	81213010	362	26049										
DPT	0	genome.wustl.edu	37	chr1	168665799	168665799	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcaaatctaaacatttgcAaattcacagtcgtattcagt	6	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	168665799	168665799	A	C	SNP	DPT	ENST00000367817	human	ensembl	69_37n	-1	known	missense	c.594	p.F198L	0.989	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196	260	0	0	127	50	28.25	-	-	-	C	168665799	A	C	168665799	3	2	275	1	0	0	0	0	1	0	0	0	4774	127	5	5	15	5	DPT	1	168665799	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	628188	168665799	80584822	363	26050										
ATP1B1	0	genome.wustl.edu	37	chr1	169100531	169100531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcattctggatttcagcGagatgaagataaggataaag	10	4	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169100531	169100531	G	A	SNP	ATP1B1	ENST00000367815	human	ensembl	69_37n	1	known	missense	c.650	p.R217Q	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	202	0	0	188	22	10.43	-	-	-	A	169100531	G	A	169100531	3	1	275	1	0	0	0	0	1	0	0	0	1136	1072	37	1	672	1	ATP1B1	1	169100531	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	434732	169100531	80150090	364	26051										
C1orf114	0	genome.wustl.edu	37	chr1	169388367	169388367	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcattctctctctttttttCtttctcttcttctatttttc	1	11	7	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169388367	169388367	C	A	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	nonsense	c.1099	p.E367*	0.998	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	559	0	0	256	88	25.51	-	-	-	A	169388367	C	A	169388367	4	1	275	1	0	0	0	0	0	1	0	0	2006	922	32	2	439	2	C1orf114	1	169388367	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	287836	169388367	79862254	365	26052										
C1orf114	0	genome.wustl.edu	37	chr1	169388387	169388387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctcttcttctatttttCgtcgctcttcctagtaaaag	4	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169388387	169388387	C	T	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.1079	p.R360Q	0.997	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	431	0	0	216	41	15.95	-	-	-	T	169388387	C	T	169388387	3	4	275	1	0	0	0	0	1	0	0	0	2006	884	31	1	459	1	C1orf114	1	169388387	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20	169388387	79862234	366	26053										
C1orf114	0	genome.wustl.edu	37	chr1	169390682	169390682	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagacagtatgttgaagtCactggtgagatatgtgcaga	13	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169390682	169390682	C	A	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	silent	c.987	p.V329	0.359	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	390	0	0	213	40	15.81	-	-	-	A	169390682	C	A	169390682	2	1	275	1	0	0	0	0	0	0	0	1	2006	813	29	2		2	C1orf114	1	169390682	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2295	169390682	79859939	367	26054										
SLC19A2	0	genome.wustl.edu	37	chr1	169446716	169446716	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccaccaaagtggcacttcGacagtaacttgtgactttct	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169446716	169446716	G	A	SNP	SLC19A2	ENST00000236137	human	ensembl	69_37n	-1	known	nonsense	c.484	p.R162*	1.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479	155	0	0	98	41	29.5	-	-	-	A	169446716	G	A	169446716	4	1	275	1	0	0	0	0	0	1	0	0	14518	1066	37	1	1029	1	SLC19A2	1	169446716	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	56034	169446716	79803905	368	26055										
F5	0	genome.wustl.edu	37	chr1	169511442	169511442	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaacagctgtgtcttcatcAgtatcttggattatttcata	6	7	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169511442	169511442	A	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	silent	c.2901	p.T967	0.010	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	338	0	0	224	58	20.35	-	-	-	G	169511442	A	G	169511442	2	3	275	1	0	0	0	0	0	0	0	1	5385	175	7	5		5	F5	1	169511442	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	64726	169511442	79739179	369	26056										
F5	0	genome.wustl.edu	37	chr1	169512226	169512226	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgtgtagccatgactgtaGattctggaggttcaaaaatc	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169512226	169512226	G	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.2117	p.S706F	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	424	0	0	280	44	13.54	-	-	-	A	169512226	G	A	169512226	3	1	275	1	0	0	0	0	1	0	0	0	5385	942	33	2	4624	2	F5	1	169512226	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	784	169512226	79738395	370	26057										
SELP	0	genome.wustl.edu	37	chr1	169578790	169578790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtcccaagttatcacaccGaactatatcggctcctctca	5	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169578790	169578790	G	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.1285	p.R429W	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	433	0	0	247	47	15.93	-	-	-	A	169578790	G	A	169578790	3	1	275	1	0	0	0	0	1	0	0	0	14107	1057	37	1	1243	1	SELP	1	169578790	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	66564	169578790	79671831	371	26058										
SCYL3	0	genome.wustl.edu	37	chr1	169823532	169823532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaagcagcagaaggcttaAtttctgggatcatatcagca	10	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	169823532	169823532	A	C	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	missense	c.2048	p.I683S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	307	0	0	184	26	12.38	-	-	-	C	169823532	A	C	169823532	3	2	275	1	0	0	0	0	1	0	0	0	14037	101	4	5	188	5	SCYL3	1	169823532	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	244742	169823532	79427089	372	26059										
PRRX1	0	genome.wustl.edu	37	chr1	170633455	170633455	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaccctgcaggcgaaaaaGaacttctccgtcagtcacct	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	170633455	170633455	G	T	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.96	p.K32N	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	79	0	0	43	5	10.42	-	-	-	T	170633455	G	T	170633455	3	4	275	1	0	0	0	0	1	0	0	0	12692	933	33	2	98	2	PRRX1	1	170633455	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	809923	170633455	78617166	373	26060										
FMO1	0	genome.wustl.edu	37	chr1	171236851	171236851	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaaaccactttgaccttcTgaaacacattcaattcaagg	5	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	171236851	171236851	T	G	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.302	p.L101R	0.013	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	177	0	0	94	41	30.37	-	-	-	G	171236851	T	G	171236851	3	3	275	1	0	0	0	0	1	0	0	0	6000	1580	55	5	308	5	FMO1	1	171236851	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	603396	171236851	78013770	374	26061										
FMO4	0	genome.wustl.edu	37	chr1	171293312	171293312	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacgaagcgtccagacttCtccgaaactggtcagtggga	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	171293312	171293312	C	A	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.357	p.F119L	0.329	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	556	0	0	318	53	14.29	-	-	-	A	171293312	C	A	171293312	3	1	275	1	0	0	0	0	1	0	0	0	6003	912	32	2	367	2	FMO4	1	171293312	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56461	171293312	77957309	375	26062										
FMO4	0	genome.wustl.edu	37	chr1	171300887	171300887	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgggaacactggaggagAcattgctgtggaactcagtc	13	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	171300887	171300887	A	G	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.593	p.D198G	0.998	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	441	2	0.45	229	41	15.07	-	-	-	G	171300887	A	G	171300887	3	3	275	1	0	0	0	0	1	0	0	0	6003	275	10	5	607	5	FMO4	1	171300887	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	7575	171300887	77949734	376	26063										
DNM3	0	genome.wustl.edu	37	chr1	172356384	172356384	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgccgggatgagatgcttCgaatgtatcaagcactgaaa	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	172356384	172356384	C	T	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	nonsense	c.2170	p.R724*	0.940	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	59	0	0	50	8	13.79	-	-	-	T	172356384	C	T	172356384	4	4	275	1	0	0	0	0	0	1	0	0	4708	876	31	1	2244	1	DNM3	1	172356384	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1055497	172356384	76894237	377	26064										
RC3H1	0	genome.wustl.edu	37	chr1	173952756	173952756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagcttcctctgcattgggCgactcagaacactctgagta	9	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	173952756	173952756	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.392	p.R131H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	275	0	0	105	17	13.93	-	-	-	T	173952756	C	T	173952756	3	4	275	1	0	0	0	0	1	0	0	0	13249	768	27	1	3077	1	RC3H1	1	173952756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1596372	173952756	75297865	378	26065										
TNN	0	genome.wustl.edu	37	chr1	175113562	175113563	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatggatggaagtttacaacINSttttgacagagacaatgata							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	175113562	175113563	-	T	INS	TNN	ENST00000239462	human	ensembl	69_37n	1	known	frame_shift_ins	c.3635_3636	p.D1214fs	1.000:0.938	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	376	0	0	461	52	10.14	-	-	-	T	175113563	-	T	175113562	7	5	275	1	0	1	1	0	0	0	0	0	16418	565	20	0	3701	0	TNN	1	175113562	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	1160806	175113562	74137059	379	26066										
TNN	0	genome.wustl.edu	37	chr1	175116102	175116102	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttggaaaggacatgaattCtccattccttacgtggagtt	9	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	175116102	175116102	C	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.3795	p.F1265L	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	176	0	0	119	33	21.71	-	-	-	A	175116102	C	A	175116102	3	1	275	1	0	0	0	0	1	0	0	0	16418	912	32	2	3865	2	TNN	1	175116102	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2540	175116102	74134519	380	26067										
TNR	0	genome.wustl.edu	37	chr1	175325554	175325554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaagcaggtcaacaagccGaaattcctcactgactccgt	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	175325554	175325554	G	A	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.3019	p.R1007W	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	497	0	0	410	54	11.59	-	-	-	A	175325554	G	A	175325554	3	1	275	1	0	0	0	0	1	0	0	0	16433	1057	37	1	1089	1	TNR	1	175325554	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	209452	175325554	73925067	381	26068										
PAPPA2	0	genome.wustl.edu	37	chr1	176668447	176668447	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctctttgacacagagatCttgctggaaaacaaggagtc	10	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	176668447	176668447	C	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	silent	c.2958	p.I986	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	386	0	0	292	48	14.08	-	-	-	A	176668447	C	A	176668447	2	1	275	1	0	0	0	0	0	0	0	1	11506	903	32	2		2	PAPPA2	1	176668447	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1342893	176668447	72582174	382	26069										
PAPPA2	0	genome.wustl.edu	37	chr1	176668655	176668655	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcctgtgaggtaccaggttCtccgcgatcccccatttgcc	11	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	176668655	176668655	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.3166	p.L1056F	0.902	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	205	0	0	129	36	21.82	-	-	-	T	176668655	C	T	176668655	3	4	275	1	0	0	0	0	1	0	0	0	11506	913	32	2	3245	2	PAPPA2	1	176668655	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	208	176668655	72581966	383	26070										
PAPPA2	0	genome.wustl.edu	37	chr1	176708820	176708820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttttttgacaactgatgGcctagttcccggagagcatc	9	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	176708820	176708820	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.3857	p.G1286D	1.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	115	0	0	99	18	15.38	-	-	-	A	176708820	G	A	176708820	3	1	275	1	0	0	0	0	1	0	0	0	11506	1203	42	4	3956	4	PAPPA2	1	176708820	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40165	176708820	72541801	384	26071										
ASTN1	0	genome.wustl.edu	37	chr1	176905332	176905332	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcgacagtgggaccaaaGgcttctccccttggaaagga	11	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	176905332	176905332	G	T	SNP	ASTN1	ENST00000281881	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASTN1	HGNC	ENSG00000152092	176	0	0	107	40	27.21	-	-	-	T	176905332	G	T	176905332	1	4	275	0	1	0	0	0	0	0	0	0	1068	1015	35	4		4	ASTN1	1	176905332	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196512	176905332	72345289	385	26072										
FAM5B	0	genome.wustl.edu	37	chr1	177250076	177250076	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggagcctgtcatggccatCtacgtcaacccctttggggg	12	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	177250076	177250076	C	A	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	silent	c.1764	p.I588	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	181	0	0	109	67	38.07	-	-	-	A	177250076	C	A	177250076	2	1	275	1	0	0	0	0	0	0	0	1	5638	903	32	2		2	FAM5B	1	177250076	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	344744	177250076	72000545	386	26073										
TDRD5	0	genome.wustl.edu	37	chr1	179599943	179599943	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaccaaaaaaattaggcttCttaaatgtgacagaacttgt	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	179599943	179599943	C	A	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.1014	p.F338L	0.997	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	294	0	0	211	25	10.59	-	-	-	A	179599943	C	A	179599943	3	1	275	1	0	0	0	0	1	0	0	0	15828	912	32	2	1036	2	TDRD5	1	179599943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2349867	179599943	69650678	387	26074										
CEP350	0	genome.wustl.edu	37	chr1	179961337	179961337	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataatcgtgtggaatttcgtGaacctttggtttcttatagg	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	179961337	179961337	G	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	nonsense	c.376	p.E126*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	206	0	0	151	33	17.74	-	-	-	T	179961337	G	T	179961337	4	4	275	1	0	0	0	0	0	1	0	0	3283	1291	45	2	390	2	CEP350	1	179961337	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	361394	179961337	69289284	388	26075										
CEP350	0	genome.wustl.edu	37	chr1	180053275	180053275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaaggcaaaaggaaagaCtgaaagcccaagaagccagt	10	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180053275	180053275	C	T	SNP	CEP350	ENST00000429851	human	ensembl	69_37n	1	novel	missense	c.770	p.T257I	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP350	HGNC	ENSG00000135837	347	0	0	357	53	12.83	-	-	-	T	180053275	C	T	180053275	3	4	275	1	0	0	0	0	1	0	0	0	3283	564	20	4	6365	4	CEP350	1	180053275	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	91938	180053275	69197346	389	26076										
CEP350	0	genome.wustl.edu	37	chr1	180062132	180062132	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggagattcatctgaaattCtttcaaagaaagatcttcct	7	7	5	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180062132	180062132	C	A	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.6892	p.L2298I	0.992	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	52	0	0	23	6	20.69	-	-	-	A	180062132	C	A	180062132	3	1	275	1	0	0	0	0	1	0	0	0	3283	913	32	2	7022	2	CEP350	1	180062132	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8857	180062132	69188489	390	26077										
LHX4	0	genome.wustl.edu	37	chr1	180217510	180217510	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcacagctcctgcctcaAgtgtgcagactgccagatgc	11	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180217510	180217510	A	C	SNP	LHX4	ENST00000263726	human	ensembl	69_37n	1	known	missense	c.167	p.K56T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX4	HGNC	ENSG00000121454	103	1	0.96	76	10	11.63	-	-	-	C	180217510	A	C	180217510	3	2	275	1	0	0	0	0	1	0	0	0	8828	72	3	5	173	5	LHX4	1	180217510	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	155378	180217510	69033111	391	26078										
ACBD6	0	genome.wustl.edu	37	chr1	180399376	180399376	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaaaacctgtatttgcttCttttcctttcttctctggta	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180399376	180399376	C	A	SNP	ACBD6	ENST00000367595	human	ensembl	69_37n	-1	known	nonsense	c.406	p.E136*	1.000	NULL	pfam_Acyl-CoA-binding_protein,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl-CoA-binding_protein,smart_Ankyrin_rpt,prints_Acyl-CoA-binding_protein,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ACBD6	HGNC	ENSG00000135847	623	0	0	468	72	13.33	-	-	-	A	180399376	C	A	180399376	4	1	275	1	0	0	0	0	0	1	0	0	126	922	32	2	462	2	ACBD6	1	180399376	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	181866	180399376	68851245	392	26079										
XPR1	0	genome.wustl.edu	37	chr1	180805727	180805727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcattcctgcttggcttcGcttcatccagtgcctgcgcc	10	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180805727	180805727	G	A	SNP	XPR1	ENST00000367590	human	ensembl	69_37n	1	known	missense	c.1376	p.R459H	1.000	pfam_EXS_C	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324	222	0	0	137	93	40.43	-	-	-	A	180805727	G	A	180805727	3	1	275	1	0	0	0	0	1	0	0	0	17548	1087	38	1	1418	1	XPR1	1	180805727	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406351	180805727	68444894	393	26080										
STX6	0	genome.wustl.edu	37	chr1	180957388	180957388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactcacactgcctgttcctCcagctcccctccgatgcgct	6	19	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	180957388	180957388	C	T	SNP	STX6	ENST00000258301	human	ensembl	69_37n	-1	known	missense	c.583	p.E195K	1.000	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823	182	0	0	85	55	39.29	-	-	-	T	180957388	C	T	180957388	3	4	275	1	0	0	0	0	1	0	0	0	15440	864	30	2	196	2	STX6	1	180957388	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	151661	180957388	68293233	394	26081										
MR1	0	genome.wustl.edu	37	chr1	181024396	181024396	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaccttccaacaccagatCgatgattgcagatccctctt	5	14	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	181024396	181024396	C	T	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	nonsense	c.1021	p.R341*	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	283	0	0	278	64	18.71	-	-	-	T	181024396	C	T	181024396	4	4	275	1	0	0	0	0	0	1	0	0	9824	876	31	1	1043	1	MR1	1	181024396	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	67008	181024396	68226225	395	26082										
CACNA1E	0	genome.wustl.edu	37	chr1	181725098	181725098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctctggttttagaggcaaCtatgtagatcatgagaaaaa	10	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	181725098	181725098	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	silent	c.3996	p.N1332	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	123	0	0	106	50	32.05	-	-	-	T	181725098	C	T	181725098	2	4	275	1	0	0	0	0	0	0	0	1	2567	564	20	4		4	CACNA1E	1	181725098	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	700702	181725098	67525523	396	26083										
DHX9	0	genome.wustl.edu	37	chr1	182846145	182846145	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaaactcctgtgttcttaAatctccaaaattattgtgca	4	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	182846145	182846145	A	G	SNP	DHX9	ENST00000474446	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DHX9	HGNC	ENSG00000135829	43	0	0	24	17	41.46	-	-	-	G	182846145	A	G	182846145	1	3	275	0	1	0	0	0	0	0	0	0	4552	29	1	5		5	DHX9	1	182846145	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1121047	182846145	66404476	397	26084										
DHX9	0	genome.wustl.edu	37	chr1	182850488	182850488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggctgggctatatccatcGaaattttgctggaaacagat	11	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	182850488	182850488	G	A	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.2714	p.R905Q	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	176	0	0	141	20	12.42	-	-	-	A	182850488	G	A	182850488	3	1	275	1	0	0	0	0	1	0	0	0	4552	1058	37	1	2800	1	DHX9	1	182850488	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4343	182850488	66400133	398	26085										
NMNAT2	0	genome.wustl.edu	37	chr1	183253160	183253160	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataccgcatcaccgtgcccaGattggcattctcatctaagg	8	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	183253160	183253160	G	T	SNP	NMNAT2	ENST00000287713	human	ensembl	69_37n	-1	known	missense	c.544	p.L182M	1.000	pfam_Cytidylyltransf	pfam_Cytidylyltransf	-	no_errors	NMNAT2	HGNC	ENSG00000157064	138	0	0	80	19	19.19	-	-	-	T	183253160	G	T	183253160	3	4	275	1	0	0	0	0	1	0	0	0	10571	933	33	2	399	2	NMNAT2	1	183253160	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	402672	183253160	65997461	399	26086										
SMG7	0	genome.wustl.edu	37	chr1	183511583	183511583	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaggaaaactgaaaccaaGaaatgcaccttagaaaagtt	8	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	183511583	183511583	G	T	SNP	SMG7	ENST00000347615	human	ensembl	69_37n	1	known	missense	c.1788	p.K596N	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	215	0	0	123	86	41.15	-	-	-	T	183511583	G	T	183511583	3	4	275	1	0	0	0	0	1	0	0	0	14887	933	33	2	1842	2	SMG7	1	183511583	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	258423	183511583	65739038	400	26087										
RGL1	0	genome.wustl.edu	37	chr1	183711314	183711314	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaggtgaaacctgtgggaGaacctactcaagaggtgtct	14	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	183711314	183711314	G	T	SNP	RGL1	ENST00000304685	human	ensembl	69_37n	1	known	nonsense	c.22	p.E8*	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344	430	2	0.46	301	39	11.47	-	-	-	T	183711314	G	T	183711314	4	4	275	1	0	0	0	0	0	1	0	0	13359	943	33	2	24	2	RGL1	1	183711314	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	199731	183711314	65539307	401	26088										
EDEM3	0	genome.wustl.edu	37	chr1	184703732	184703732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctaaattaacatctcttaAaacttttctcactgcatctt	1	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	184703732	184703732	A	C	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.391	p.L131V	0.996	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	196	0	0	138	19	12.1	-	-	-	C	184703732	A	C	184703732	3	2	275	1	0	0	0	0	1	0	0	0	4948	11	1	5	2471	5	EDEM3	1	184703732	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	992418	184703732	64546889	402	26089										
RNF2	0	genome.wustl.edu	37	chr1	185060751	185060751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaattgtggtttcacctcGaagtctacacagtgaattaa	8	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	185060751	185060751	G	A	SNP	RNF2	ENST00000367510	human	ensembl	69_37n	1	known	missense	c.128	p.R43Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481	325	0	0	237	81	25.47	-	-	-	A	185060751	G	A	185060751	3	1	275	1	0	0	0	0	1	0	0	0	13558	1058	37	1	134	1	RNF2	1	185060751	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	357019	185060751	64189870	403	26090										
RNF2	0	genome.wustl.edu	37	chr1	185062237	185062237	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaaaactagtttccaaaaGatcactaaggccagacccaa	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	185062237	185062237	G	T	SNP	RNF2	ENST00000367510	human	ensembl	69_37n	1	known	missense	c.293	p.R98I	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481	280	0	0	199	72	26.47	-	-	-	T	185062237	G	T	185062237	3	4	275	1	0	0	0	0	1	0	0	0	13558	942	33	2	303	2	RNF2	1	185062237	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1486	185062237	64188384	404	26091										
HMCN1	0	genome.wustl.edu	37	chr1	186056360	186056360	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctacaggtggtcgaactCtacagattattcgggccaag	10	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186056360	186056360	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9058	p.L3020I	0.701	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	346	0	0	165	81	32.93	-	-	-	A	186056360	C	A	186056360	3	1	275	1	0	0	0	0	1	0	0	0	7271	912	32	2	9292	2	HMCN1	1	186056360	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	994123	186056360	63194261	405	26092										
HMCN1	0	genome.wustl.edu	37	chr1	186057392	186057392	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccacgatagcatggttaaaGaaccacaagcgcataggtaa	9	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186057392	186057392	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9561	p.K3187N	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	140	0	0	111	16	12.6	-	-	-	T	186057392	G	T	186057392	3	4	275	1	0	0	0	0	1	0	0	0	7271	933	33	2	9807	2	HMCN1	1	186057392	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1032	186057392	63193229	406	26093										
HMCN1	0	genome.wustl.edu	37	chr1	186057875	186057875	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcccagaaatattactttCtttcaattcaaggtatgtat	5	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186057875	186057875	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9715	p.L3239I	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	296	0	0	191	31	13.96	-	-	-	A	186057875	C	A	186057875	3	1	275	1	0	0	0	0	1	0	0	0	7271	913	32	2	9965	2	HMCN1	1	186057875	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	483	186057875	63192746	407	26094										
HMCN1	0	genome.wustl.edu	37	chr1	186059896	186059896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatttctccaaagttcctcCaagtgttgctggtgctgaaa	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186059896	186059896	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9734	p.P3245L	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	263	0	0	164	38	18.72	-	-	-	T	186059896	C	T	186059896	3	4	275	1	0	0	0	0	1	0	0	0	7271	594	21	4	9988	4	HMCN1	1	186059896	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2021	186059896	63190725	408	26095										
HMCN1	0	genome.wustl.edu	37	chr1	186072780	186072780	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctaggaggaggagaggttCttcgaatttctactgctcag	12	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186072780	186072780	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.10750	p.L3584I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	148	0	0	128	23	15.23	-	-	-	A	186072780	C	A	186072780	3	1	275	1	0	0	0	0	1	0	0	0	7271	913	32	2	11024	2	HMCN1	1	186072780	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12884	186072780	63177841	409	26096										
HMCN1	0	genome.wustl.edu	37	chr1	186106711	186106711	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catccaaaagaggagtcgtcTgtgcaaccagccccttccag	9	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186106711	186106711	T	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.13664	p.L4555R	0.948	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	272	1	0.37	212	28	11.67	-	-	-	G	186106711	T	G	186106711	3	3	275	1	0	0	0	0	1	0	0	0	7271	1580	55	5	14014	5	HMCN1	1	186106711	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	33931	186106711	63143910	410	26097										
HMCN1	0	genome.wustl.edu	37	chr1	186113349	186113349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccttggggaacatgcagcGaaagttgtgggaaaggtact	15	6	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186113349	186113349	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.13969	p.E4657K	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	241	0	0	107	79	42.47	-	-	-	A	186113349	G	A	186113349	3	1	275	1	0	0	0	0	1	0	0	0	7271	1059	37	1	14327	1	HMCN1	1	186113349	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6638	186113349	63137272	411	26098										
PRG4	0	genome.wustl.edu	37	chr1	186275713	186275713	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaacagttgaaactaaaGaaactactacaacaaataaa	4	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186275713	186275713	G	T	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	nonsense	c.862	p.E288*	0.006	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	94	0	0	67	10	12.99	-	-	-	T	186275713	G	T	186275713	4	4	275	1	0	0	0	0	0	1	0	0	12562	943	33	2	884	2	PRG4	1	186275713	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	162364	186275713	62974908	412	26099										
TPR	0	genome.wustl.edu	37	chr1	186301472	186301472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagaactgggggtagccGaaactttgaaattatataaa	10	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186301472	186301472	G	A	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.5459	p.S1820L	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	114	0	0	72	14	16.09	-	-	-	A	186301472	G	A	186301472	3	1	275	1	0	0	0	0	1	0	0	0	16512	1059	37	1	1688	1	TPR	1	186301472	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25759	186301472	62949149	413	26100										
PTGS2	0	genome.wustl.edu	37	chr1	186645671	186645671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctcctgtttaagcacatCgcatactctgttgtgttccc	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186645671	186645671	C	T	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	missense	c.898	p.D300N	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	221	0	0	139	18	11.46	-	-	-	T	186645671	C	T	186645671	3	4	275	1	0	0	0	0	1	0	0	0	12837	884	31	1	932	1	PTGS2	1	186645671	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	344199	186645671	62604950	414	26101										
PTGS2	0	genome.wustl.edu	37	chr1	186648332	186648332	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattcttgtcaaaaattcCgctgcaagaagacgaagaaa	7	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186648332	186648332	C	T	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	silent	c.171	p.P57	0.967	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	156	0	0	78	28	26.42	-	-	-	T	186648332	C	T	186648332	2	4	275	1	0	0	0	0	0	0	0	1	12837	666	23	1		1	PTGS2	1	186648332	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2661	186648332	62602289	415	26102										
PLA2G4A	0	genome.wustl.edu	37	chr1	186915853	186915853	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttatttggaagcaaattttTtatgggaacagtcgttaaga	9	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	186915853	186915853	T	G	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.1118	p.F373C	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	380	0	0	233	65	21.81	-	-	-	G	186915853	T	G	186915853	3	3	275	1	0	0	0	0	1	0	0	0	12075	1841	64	5	1156	5	PLA2G4A	1	186915853	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	267521	186915853	62334768	416	26103										
FAM5C	0	genome.wustl.edu	37	chr1	190250712	190250712	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccagagtagcagatagcaaGaaatgtgtcccatatttctt	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	190250712	190250712	G	T	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.405	p.F135L	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	131	0	0	85	34	28.57	-	-	-	T	190250712	G	T	190250712	3	4	275	1	0	0	0	0	1	0	0	0	5639	933	33	2	1919	2	FAM5C	1	190250712	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3334859	190250712	58999909	417	26104										
RGS1	0	genome.wustl.edu	37	chr1	192545033	192545033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattcacttctagacgacaaAatgcaaaaaaggaggccaaa	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	192545033	192545033	A	C	SNP	RGS1	ENST00000367459	human	ensembl	69_37n	1	known	missense	c.111	p.K37N	0.025	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS1	HGNC	ENSG00000090104	478	0	0	268	73	21.41	-	-	-	C	192545033	A	C	192545033	3	2	275	1	0	0	0	0	1	0	0	0	13376	11	1	5	113	5	RGS1	1	192545033	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2294321	192545033	56705588	418	26105										
RGS13	0	genome.wustl.edu	37	chr1	192628676	192628676	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaactcaaaagtttaaataGaaaacagtatattgaaagtg	6	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	192628676	192628676	G	T	SNP	RGS13	ENST00000462955	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RGS13	HGNC	ENSG00000127074	174	0	0	110	34	23.61	-	-	-	T	192628676	G	T	192628676	1	4	275	0	1	0	0	0	0	0	0	0	13380	957	33	2		2	RGS13	1	192628676	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83643	192628676	56621945	419	26106										
UCHL5	0	genome.wustl.edu	37	chr1	193028399	193028399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcccgtcatggccctggCcacacaccgccccgatccac	8	20	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	193028399	193028399	C	T	SNP	UCHL5	ENST00000367450	human	ensembl	69_37n	-1	known	missense	c.28	p.A10T	0.999	NULL	pfam_Peptidase_C12,pirsf_Ubiquitinyl_hydrolase_UCH37,prints_Peptidase_C12	-	no_start_codon	UCHL5	HGNC	ENSG00000116750	49	0	0	25	5	16.67	-	-	-	T	193028399	C	T	193028399	3	4	275	1	0	0	0	0	1	0	0	0	17019	754	26	4		4	UCHL5	1	193028399	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	399723	193028399	56222222	420	26107										
TROVE2	0	genome.wustl.edu	37	chr1	193046142	193046142	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcgccctgatgaagaaattTtgaaagcattggatgctgct	12	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	193046142	193046142	T	G	SNP	TROVE2	ENST00000367441	human	ensembl	69_37n	1	known	missense	c.1048	p.L350V	0.967	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747	331	0	0	307	40	11.53	-	-	-	G	193046142	T	G	193046142	3	3	275	1	0	0	0	0	1	0	0	0	16672	1838	64	5	1062	5	TROVE2	1	193046142	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	17743	193046142	56204479	421	26108										
CDC73	0	genome.wustl.edu	37	chr1	193099338	193099338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggttagaagacctgatcGaaaagatctacttggatatc	10	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	193099338	193099338	G	A	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.272	p.R91Q	1.000	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	803	1	0.12	423	274	39.2	-	-	-	A	193099338	G	A	193099338	3	1	275	1	0	0	0	0	1	0	0	0	3114	1058	37	1	282	1	CDC73	1	193099338	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	53196	193099338	56151283	422	26109										
CDC73	0	genome.wustl.edu	37	chr1	193181526	193181526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgtctttataggatctcGaacacccattatcataattc	4	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	193181526	193181526	G	A	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.1073	p.R358Q	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	209	0	0	166	37	18.23	-	-	-	A	193181526	G	A	193181526	3	1	275	1	0	0	0	0	1	0	0	0	3114	1058	37	1	1123	1	CDC73	1	193181526	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	82188	193181526	56069095	423	26110										
KCNT2	0	genome.wustl.edu	37	chr1	196197455	196197455	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaggccagtggatctggtcGaattaagtatctaataaaag	11	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	196197455	196197455	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	nonsense	c.3307	p.R1103*	0.997	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	201	0	0	94	49	34.27	-	-	-	A	196197455	G	A	196197455	4	1	275	1	0	0	0	0	0	1	0	0	8146	1066	37	1	104	1	KCNT2	1	196197455	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3015929	196197455	53053166	424	26111										
KCNT2	0	genome.wustl.edu	37	chr1	196295846	196295846	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatcttaaaatatacttaCgggttatccaatagcagtac	6	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	196295846	196295846	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	splice_site	c.2276+1	e19+1	1.000	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687	161	0	0	139	18	11.46	-	-	-	T	196295846	C	T	196295846	5	4	275	1	0	0	0	0	0	0	1	0	8146	550	19	1	1170	1	KCNT2	1	196295846	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	98391	196295846	52954775	425	26112										
CFHR4	0	genome.wustl.edu	37	chr1	196887409	196887409	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaggaaaaagtgacataaAatattatgcaaaaacagggg	9	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	196887409	196887409	A	C	SNP	CFHR4	ENST00000367416	human	ensembl	69_37n	1	known	missense	c.1607	p.K536T	0.005	superfamily_Complement_control_module	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	197	0	0	178	20	10.1	-	-	-	C	196887409	A	C	196887409	3	2	275	1	0	0	0	0	1	0	0	0	3316	14	1	5	891	5	CFHR4	1	196887409	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	591563	196887409	52363212	426	26113										
CFHR5	0	genome.wustl.edu	37	chr1	196977766	196977766	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatatcatcaccaccatttCgagcaatctgtcaggaaggg	9	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	196977766	196977766	C	T	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	nonsense	c.1735	p.R579*	0.793	superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	190	0	0	150	18	10.71	-	-	-	T	196977766	C	T	196977766	4	4	275	1	0	0	0	0	0	1	0	0	3317	876	31	1	1701	1	CFHR5	1	196977766	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90357	196977766	52272855	427	26114										
ASPM	0	genome.wustl.edu	37	chr1	197062325	197062325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagcagcagatttctgccGaagaaagacctgccttcctt	8	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197062325	197062325	G	A	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.9151	p.R3051W	0.371	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	164	0	0	88	54	38.03	-	-	-	A	197062325	G	A	197062325	3	1	275	1	0	0	0	0	1	0	0	0	1060	1057	37	1	1314	1	ASPM	1	197062325	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84559	197062325	52188296	428	26115										
ASPM	0	genome.wustl.edu	37	chr1	197070795	197070795	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacagcagaatgccattgtCtgatataattttctctttgt	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197070795	197070795	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.7586	p.R2529K	0.001	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	98	0	0	73	16	17.98	-	-	-	T	197070795	C	T	197070795	3	4	275	1	0	0	0	0	1	0	0	0	1060	913	32	2	2891	2	ASPM	1	197070795	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8470	197070795	52179826	429	26116										
ASPM	0	genome.wustl.edu	37	chr1	197074201	197074201	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattgtaactgtagcccaaaGatatcgtttataagatgtaa	7	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197074201	197074201	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.4180	p.L1394I	0.003	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	176	0	0	142	44	23.66	-	-	-	T	197074201	G	T	197074201	3	4	275	1	0	0	0	0	1	0	0	0	1060	942	33	2	6297	2	ASPM	1	197074201	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3406	197074201	52176420	430	26117										
ASPM	0	genome.wustl.edu	37	chr1	197108974	197108974	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtccttttgtttgttttaGaaattggagttctgaatatt	8	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197108974	197108974	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.1949	p.S650Y	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	422	0	0	296	46	13.41	-	-	-	T	197108974	G	T	197108974	3	4	275	1	0	0	0	0	1	0	0	0	1060	942	33	2	8584	2	ASPM	1	197108974	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34773	197108974	52141647	431	26118										
CRB1	0	genome.wustl.edu	37	chr1	197403901	197403901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagaagcaatgggaatattAccagagaactcaccaatatc	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197403901	197403901	A	G	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.2908	p.T970A	0.884	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	110	0	0	110	16	12.7	-	-	-	G	197403901	A	G	197403901	3	3	275	1	0	0	0	0	1	0	0	0	3878	391	14	5	2942	5	CRB1	1	197403901	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	294927	197403901	51846720	432	26119										
DENND1B	0	genome.wustl.edu	37	chr1	197522230	197522230	+	Nonsense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatttagttttgccagtcGaccatcgataaactagaatt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197522230	197522230	G	A	SNP	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	nonsense	c.1162	p.R388*	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	439	1	0.23	265	31	10.4	-	-	-	A	197522230	G	A	197522230	4	1	275	1	0	0	0	0	0	1	0	0	4463	1066	37	1	1238	1	DENND1B	1	197522230	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	118329	197522230	51728391	433	26120	234	2								
DENND1B	0	genome.wustl.edu	37	chr1	197522236	197522236	+	Missense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagttttgccagtcgaccatCgataaactagaattaaaaag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	197522236	197522236	C	T	SNP	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	missense	c.1156	p.D386N	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	427	0	0	192	93	32.52	-	-	-	T	197522236	C	T	197522236	3	4	275	1	0	0	0	0	1	0	0	0	4463	884	31	1	1244	1	DENND1B	1	197522236	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6	197522236	51728385	434	26121	234	2								
PTPRC	0	genome.wustl.edu	37	chr1	198677334	198677334	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactatttgtttaaaatggaAaaatattgaaacctttactt	4	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	198677334	198677334	A	C	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.977	p.K326T	0.000	pirsf_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	201	0	0	207	23	10	-	-	-	C	198677334	A	C	198677334	3	2	275	1	0	0	0	0	1	0	0	0	12880	14	1	5	1016	5	PTPRC	1	198677334	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1155098	198677334	50573287	435	26122										
NR5A2	0	genome.wustl.edu	37	chr1	200090049	200090049	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtttgatcaacgagagttCgtatgtctgaaattcttggt	10	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	200090049	200090049	C	T	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	silent	c.1344	p.F448	0.857	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	241	0	0	189	44	18.88	-	-	-	T	200090049	C	T	200090049	2	4	275	1	0	0	0	0	0	0	0	1	10709	883	31	1		1	NR5A2	1	200090049	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1412715	200090049	49160572	436	26123										
KIF14	0	genome.wustl.edu	37	chr1	200523595	200523595	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actccatttggagaatcataCctttcagtgcagaaataata	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	200523595	200523595	C	A	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	splice_site	c.4567+1	e28+1	1.000	-	-	-	no_errors	KIF14	HGNC	ENSG00000118193	208	1	0.48	141	16	10.19	-	-	-	A	200523595	C	A	200523595	5	1	275	1	0	0	0	0	0	0	1	0	8328	521	18	4	386	4	KIF14	1	200523595	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	433546	200523595	48727026	437	26124										
KIF14	0	genome.wustl.edu	37	chr1	200586888	200586888	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttcctgtttatttgcaaGaaaggaactttttggtcttt	7	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	200586888	200586888	G	T	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.964	p.L322I	0.001	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	213	0	0	176	51	22.47	-	-	-	T	200586888	G	T	200586888	3	4	275	1	0	0	0	0	1	0	0	0	8328	942	33	2	4098	2	KIF14	1	200586888	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	63293	200586888	48663733	438	26125										
CACNA1S	0	genome.wustl.edu	37	chr1	201012458	201012458	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgttgccataggcgacatTggcgttggcattgttggtat	14	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	201012458	201012458	T	C	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.4999	p.N1667D	0.996	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	429	0	0	262	30	10.24	-	-	-	C	201012458	T	C	201012458	3	2	275	1	0	0	0	0	1	0	0	0	2572	1812	63	5	642	5	CACNA1S	1	201012458	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	425570	201012458	48238163	439	26126										
IGFN1	0	genome.wustl.edu	37	chr1	201182393	201182393	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatggtgaggtccagggtcCtggggccctaaaggaggatg	18	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	201182393	201182393	C	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.8372	p.P2791H	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	205	0	0	111	25	18.12	-	-	-	A	201182393	C	A	201182393	3	1	275	1	0	0	0	0	1	0	0	0	7644	681	24	4	8414	4	IGFN1	1	201182393	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	169935	201182393	48068228	440	26127										
TNNI1	0	genome.wustl.edu	37	chr1	201379468	201379468	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtacctctattgtgaggtCggagacttggcggcatcaaa	13	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	201379468	201379468	C	T	SNP	TNNI1	ENST00000336092	human	ensembl	69_37n	-1	known	silent	c.552	p.P184	0.009	NULL	pfam_Troponin	-	no_errors	TNNI1	HGNC	ENSG00000159173	239	1	0.42	119	75	38.27	-	-	-	T	201379468	C	T	201379468	2	4	275	1	0	0	0	0	0	0	0	1	16421	871	31	1		1	TNNI1	1	201379468	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	197075	201379468	47871153	441	26128										
IPO9	0	genome.wustl.edu	37	chr1	201841956	201841956	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttggatcttccttgccagCtctgtggcactctgtaagct	9	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	201841956	201841956	C	T	SNP	IPO9	ENST00000361565	human	ensembl	69_37n	1	known	silent	c.2577	p.S859	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	44	0	0	35	27	42.86	-	-	-	T	201841956	C	T	201841956	2	4	275	1	0	0	0	0	0	0	0	1	7853	811	28	4		4	IPO9	1	201841956	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	462488	201841956	47408665	442	26129										
PPP1R12B	0	genome.wustl.edu	37	chr1	202396302	202396302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttgtgacatggatattcGaaataaactggttagtgagc	10	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	202396302	202396302	G	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	missense	c.836	p.R279Q	0.999	superfamily_Ankyrin_rpt-contain_dom,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	190	0	0	140	18	11.39	-	-	-	A	202396302	G	A	202396302	3	1	275	1	0	0	0	0	1	0	0	0	12432	1058	37	1	854	1	PPP1R12B	1	202396302	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	554346	202396302	46854319	443	26130										
SYT2	0	genome.wustl.edu	37	chr1	202574726	202574726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaccagagacactcacaggGaatcttgtttatctcattga	7	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	202574726	202574726	G	T	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	missense	c.175	p.P59T	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	184	0	0	121	67	35.45	-	-	-	T	202574726	G	T	202574726	3	4	275	1	0	0	0	0	1	0	0	0	15566	1174	41	2	1116	2	SYT2	1	202574726	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	178424	202574726	46675895	444	26131										
KDM5B	0	genome.wustl.edu	37	chr1	202719899	202719899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccagcacactgattagttCggtaaacctaaagagacaga	8	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	202719899	202719899	C	T	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.1709	p.R570Q	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	257	0	0	236	35	12.92	-	-	-	T	202719899	C	T	202719899	3	4	275	1	0	0	0	0	1	0	0	0	8187	884	31	1	2985	1	KDM5B	1	202719899	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	145173	202719899	46530722	445	26132										
KLHL12	0	genome.wustl.edu	37	chr1	202878177	202878177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtccctgcatctgactccGaagttcaggcctcagatgaa	11	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	202878177	202878177	G	A	SNP	KLHL12	ENST00000435533	human	ensembl	69_37n	-1	known	missense	c.907	p.R303W	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153	124	0	0	150	20	11.76	-	-	-	A	202878177	G	A	202878177	3	1	275	1	0	0	0	0	1	0	0	0	8421	1057	37	1	941	1	KLHL12	1	202878177	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158278	202878177	46372444	446	26133										
CHIT1	0	genome.wustl.edu	37	chr1	203186161	203186161	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcagctttgccctggcaGaacgtgtcttgtccagggct	11	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	203186161	203186161	G	A	SNP	CHIT1	ENST00000367229	human	ensembl	69_37n	-1	known	silent	c.1257	p.F419	1.000	superfamily_Chitin-bd_dom,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063	154	0	0	78	22	22	-	-	-	A	203186161	G	A	203186161	2	1	275	1	0	0	0	0	0	0	0	1	3375	933	33	2		2	CHIT1	1	203186161	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	307984	203186161	46064460	447	26134										
CHIT1	0	genome.wustl.edu	37	chr1	203186191	203186191	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtccagggctggggccatgCtcaggttcagagggctgacc	16	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	203186191	203186191	C	A	SNP	CHIT1	ENST00000367229	human	ensembl	69_37n	-1	known	missense	c.1227	p.E409D	0.057	NULL	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063	156	0	0	71	35	33.02	-	-	-	A	203186191	C	A	203186191	3	1	275	1	0	0	0	0	1	0	0	0	3375	796	28	4	177	4	CHIT1	1	203186191	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30	203186191	46064430	448	26135										
ZC3H11A	0	genome.wustl.edu	37	chr1	203818959	203818959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcagtcttgacacctcttCggggagatgtagcctcttgc	10	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	203818959	203818959	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.1744	p.R582W	0.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	101	0	0	97	15	13.27	-	-	-	T	203818959	C	T	203818959	3	4	275	1	0	0	0	0	1	0	0	0	17656	875	31	1	1794	1	ZC3H11A	1	203818959	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	632768	203818959	45431662	449	26136										
ETNK2	0	genome.wustl.edu	37	chr1	204103697	204103697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggatgagggcccagagaGcccagaagaagtgagacgcc	15	10	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	204103697	204103697	G	A	SNP	ETNK2	ENST00000367202	human	ensembl	69_37n	-1	known	missense	c.1034	p.A345V	0.995	superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	ETNK2	HGNC	ENSG00000143845	173	0	0	125	38	23.31	-	-	-	A	204103697	G	A	204103697	3	1	275	1	0	0	0	0	1	0	0	0	5311	971	34	4	134	4	ETNK2	1	204103697	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	284738	204103697	45146924	450	26137										
PIK3C2B	0	genome.wustl.edu	37	chr1	204415234	204415234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctccgagtggcagtaatatCgcttctcccacaggcgcttc	9	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	204415234	204415234	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.2528	p.R843Q	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	83	0	0	56	8	12.12	-	-	-	T	204415234	C	T	204415234	3	4	275	1	0	0	0	0	1	0	0	0	11984	884	31	1	2448	1	PIK3C2B	1	204415234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	311537	204415234	44835387	451	26138										
NFASC	0	genome.wustl.edu	37	chr1	204953168	204953168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcagatcccagggctgcGcccactgaagttaaagtccg	11	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	204953168	204953168	G	A	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	silent	c.2484	p.A828	0.736	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	174	0	0	171	31	15.35	-	-	-	A	204953168	G	A	204953168	2	1	275	1	0	0	0	0	0	0	0	1	10431	1074	38	1		1	NFASC	1	204953168	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	537934	204953168	44297453	452	26139										
CDK18	0	genome.wustl.edu	37	chr1	205496933	205496933	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcccccagattttcatgttCcagctgctccggggcctcgc	9	17	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	205496933	205496933	C	T	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.831	p.F277	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	181	0	0	109	42	27.81	-	-	-	T	205496933	C	T	205496933	2	4	275	1	0	0	0	0	0	0	0	1	3163	854	30	2		2	CDK18	1	205496933	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	543765	205496933	43753688	453	26140										
MFSD4	0	genome.wustl.edu	37	chr1	205549792	205549792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcctctgtccccaggtgCtccatttcttcgtgggcttt	8	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	205549792	205549792	C	T	SNP	MFSD4	ENST00000367147	human	ensembl	69_37n	1	known	missense	c.433	p.L145F	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514	100	0	0	43	12	21.43	-	-	-	T	205549792	C	T	205549792	3	4	275	1	0	0	0	0	1	0	0	0	9604	797	28	4	443	4	MFSD4	1	205549792	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	52859	205549792	43700829	454	26141										
PM20D1	0	genome.wustl.edu	37	chr1	205819088	205819088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgaactgagaagggattCgcgacgccctttgatgctcc	12	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	205819088	205819088	C	T	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	missense	c.113	p.R38Q	0.650	NULL	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	228	0	0	173	26	13.07	-	-	-	T	205819088	C	T	205819088	3	4	275	1	0	0	0	0	1	0	0	0	12202	884	31	1	1447	1	PM20D1	1	205819088	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	269296	205819088	43431533	455	26142										
SLC26A9	0	genome.wustl.edu	37	chr1	205892739	205892739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggccagtgcatagccatttCgactggatgaagcaggaaga	14	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	205892739	205892739	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.1499	p.R500Q	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	251	0	0	194	27	12.22	-	-	-	T	205892739	C	T	205892739	3	4	275	1	0	0	0	0	1	0	0	0	14613	884	31	1	1204	1	SLC26A9	1	205892739	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73651	205892739	43357882	456	26143										
SLC26A9	0	genome.wustl.edu	37	chr1	205895723	205895723	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgagttgcttgagggagttCttgagattgacagcgatcag	15	5	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	205895723	205895723	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	silent	c.1329	p.K443	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	314	0	0	208	52	20	-	-	-	T	205895723	C	T	205895723	2	4	275	1	0	0	0	0	0	0	0	1	14613	912	32	2		2	SLC26A9	1	205895723	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2984	205895723	43354898	457	26144										
CTSE	0	genome.wustl.edu	37	chr1	206327380	206327380	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgcctacctgtgtgcttgGcatgagaccaagaagcaaag	11	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	206327380	206327380	G	C	SNP	CTSE	ENST00000486757	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	CTSE	HGNC	ENSG00000196188	81	0	0	49	40	44.94	-	-	-	C	206327380	G	C	206327380	1	2	275	0	1	0	0	0	0	0	0	0	4065	1218	42	4		4	CTSE	1	206327380	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	431657	206327380	42923241	458	26145										
CTSE	0	genome.wustl.edu	37	chr1	206328746	206328746	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggaggcactgttatgttCtgctccgagggctgccaggc	16	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	206328746	206328746	C	A	SNP	CTSE	ENST00000361052	human	ensembl	69_37n	1	known	missense	c.828	p.F276L	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSE	HGNC	ENSG00000196188	234	0	0	181	58	24.27	-	-	-	A	206328746	C	A	206328746	3	1	275	1	0	0	0	0	1	0	0	0	4065	912	32	2	839	2	CTSE	1	206328746	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1366	206328746	42921875	459	26146										
RASSF5	0	genome.wustl.edu	37	chr1	206758592	206758592	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgacacggaggtcctcagcTttgtgctaaaggagaatgaa	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	206758592	206758592	T	G	SNP	RASSF5	ENST00000355294	human	ensembl	69_37n	1	known	missense	c.1069	p.F357V	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF5	HGNC	ENSG00000136653	249	0	0	172	27	13.57	-	-	-	G	206758592	T	G	206758592	3	3	275	1	0	0	0	0	1	0	0	0	13172	1609	56	5	1211	5	RASSF5	1	206758592	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	429846	206758592	42492029	460	26147										
FAIM3	0	genome.wustl.edu	37	chr1	207078237	207078237	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatagatggggatgggagtCgagatggggcatgggaagtg	21	2	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207078237	207078237	C	T	SNP	FAIM3	ENST00000528654	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAIM3	HGNC	ENSG00000162894	27	0	0	22	6	21.43	-	-	-	T	207078237	C	T	207078237	1	4	275	0	1	0	0	0	0	0	0	0	5417	899	31	1		1	FAIM3	1	207078237	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	319645	207078237	42172384	461	26148										
PIGR	0	genome.wustl.edu	37	chr1	207103725	207103725	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctggactggagcaggaagtCtttgtaggccatctcggctt	14	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207103725	207103725	C	T	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.2233	p.D745N	0.612	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	132	0	0	81	18	18	-	-	-	T	207103725	C	T	207103725	3	4	275	1	0	0	0	0	1	0	0	0	11971	913	32	2	65	2	PIGR	1	207103725	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25488	207103725	42146896	462	26149										
C4BPA	0	genome.wustl.edu	37	chr1	207314502	207314502	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcattataaacaatctagttCatacagctttttcaaagaag	5	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207314502	207314502	C	A	SNP	C4BPA	ENST00000367070	human	ensembl	69_37n	1	known	nonsense	c.1325	p.S442*	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838	250	0	0	120	18	13.04	-	-	-	A	207314502	C	A	207314502	4	1	275	1	0	0	0	0	0	1	0	0	2270	838	29	2	1359	2	C4BPA	1	207314502	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	210777	207314502	41936119	463	26150										
CD55	0	genome.wustl.edu	37	chr1	207498023	207498023	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccgtccaggttacagaagaGaaccttctctatcaccaaaa	7	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207498023	207498023	G	T	SNP	CD55	ENST00000314754	human	ensembl	69_37n	1	known	nonsense	c.406	p.E136*	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD55	HGNC	ENSG00000196352	181	0	0	111	20	15.27	-	-	-	T	207498023	G	T	207498023	4	4	275	1	0	0	0	0	0	1	0	0	3053	943	33	2	416	2	CD55	1	207498023	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	183521	207498023	41752598	464	26151										
CR2	0	genome.wustl.edu	37	chr1	207640218	207640218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtttggtgtcaagcaaatAatatgtgggggccgacacga	13	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207640218	207640218	A	G	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	missense	c.406	p.N136D	0.015	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	143	0	0	116	78	40.21	-	-	-	G	207640218	A	G	207640218	3	3	275	1	0	0	0	0	1	0	0	0	3872	362	13	5	412	5	CR2	1	207640218	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	142195	207640218	41610403	465	26152										
CR1	0	genome.wustl.edu	37	chr1	207785346	207785346	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgctacttccacttaatCtccagcttggggcaaaggtg	11	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207785346	207785346	C	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.6535	p.L2179I	0.004	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	256	0	0	267	39	12.75	-	-	-	A	207785346	C	A	207785346	3	1	275	1	0	0	0	0	1	0	0	0	3870	913	32	2	6689	2	CR1	1	207785346	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	145128	207785346	41465275	466	26153										
CR1L	0	genome.wustl.edu	37	chr1	207890889	207890889	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatattccctatggaaaaGaagtatcttacacatgtgac	8	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207890889	207890889	G	T	SNP	CR1L	ENST00000508064	human	ensembl	69_37n	1	known	nonsense	c.1495	p.E499*	0.007	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721	504	0	0	435	51	10.47	-	-	-	T	207890889	G	T	207890889	4	4	275	1	0	0	0	0	0	1	0	0	3871	943	33	2	1537	2	CR1L	1	207890889	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	105543	207890889	41359732	467	26154										
CD46	0	genome.wustl.edu	37	chr1	207925531	207925531	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctctgctttcctccggaGaaataacagcgtcttccgcg	8	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	207925531	207925531	G	T	SNP	CD46	ENST00000469535	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD46	HGNC	ENSG00000117335	53	0	0	23	15	39.47	-	-	-	T	207925531	G	T	207925531	1	4	275	0	1	0	0	0	0	0	0	0	3047	957	33	2		2	CD46	1	207925531	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34642	207925531	41325090	468	26155										
TRAF5	0	genome.wustl.edu	37	chr1	211533168	211533168	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccagctgcccaccctgttCtctctccctccctaggcctt	6	21	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	211533168	211533168	C	A	SNP	TRAF5	ENST00000462410	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRAF5	HGNC	ENSG00000082512	130	0	0	114	17	12.98	-	-	-	A	211533168	C	A	211533168	1	1	275	0	1	0	0	0	0	0	0	0	16540	928	32	2		2	TRAF5	1	211533168	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3607637	211533168	37717453	469	26156										
DTL	0	genome.wustl.edu	37	chr1	212209203	212209203	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggcatttctacgacttttCtctcagctgaggcttttcct	8	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	212209203	212209203	C	A	SNP	DTL	ENST00000475419	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DTL	HGNC	ENSG00000143476	111	0	0	73	15	17.05	-	-	-	A	212209203	C	A	212209203	1	1	275	0	1	0	0	0	0	0	0	0	4822	928	32	2		2	DTL	1	212209203	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	676035	212209203	37041418	470	26157										
DTL	0	genome.wustl.edu	37	chr1	212274365	212274365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgagaatccatctccacGaagtccgtcatcccagacac	8	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	212274365	212274365	G	A	SNP	DTL	ENST00000366991	human	ensembl	69_37n	1	known	missense	c.2033	p.R678Q	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476	115	0	0	58	54	46.96	-	-	-	A	212274365	G	A	212274365	3	1	275	1	0	0	0	0	1	0	0	0	4822	1058	37	1	2087	1	DTL	1	212274365	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	65162	212274365	36976256	471	26158										
BATF3	0	genome.wustl.edu	37	chr1	212870346	212870346	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtctgcttcttccgacttCtctgagcagcaactcggttt	10	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	212870346	212870346	C	A	SNP	BATF3	ENST00000243440	human	ensembl	69_37n	-1	known	missense	c.152	p.R51I	1.000	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,prints_Leuzip_Fos,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,prints_Leuzip_Fos,pfscan_bZIP	-	no_errors	BATF3	HGNC	ENSG00000123685	481	0	0	281	81	22.38	-	-	-	A	212870346	C	A	212870346	3	1	275	1	0	0	0	0	1	0	0	0	1331	913	32	2	239	2	BATF3	1	212870346	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	595981	212870346	36380275	472	26159										
FLVCR1	0	genome.wustl.edu	37	chr1	213046102	213046102	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaagagtactcctataaGaaatcaataagaaacctgtt	6	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	213046102	213046102	G	A	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	1	known	silent	c.966	p.K322	0.155	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	225	0	0	214	28	11.52	-	-	-	A	213046102	G	A	213046102	2	1	275	1	0	0	0	0	0	0	0	1	5991	933	33	2		2	FLVCR1	1	213046102	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	175756	213046102	36204519	473	26160										
FLVCR1	0	genome.wustl.edu	37	chr1	213061314	213061314	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggaccttagatatattatCatcgtgtttgttactggagg	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	213061314	213061314	C	A	SNP	FLVCR1	ENST00000419102	human	ensembl	69_37n	1	novel	nonsense	c.674	p.S225*	0.001	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FLVCR1	HGNC	ENSG00000162769	273	1	0.36	294	33	10.09	-	-	-	A	213061314	C	A	213061314	4	1	275	1	0	0	0	0	0	1	0	0	5991	816	29	2	1300	2	FLVCR1	1	213061314	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15212	213061314	36189307	474	26161										
ANGEL2	0	genome.wustl.edu	37	chr1	213173739	213173739	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcactgtctgtaagaatagaGgaaaatatattaatgttatt	7	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	213173739	213173739	G	T	SNP	ANGEL2	ENST00000498650	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606	264	0	0	156	64	29.09	-	-	-	T	213173739	G	T	213173739	1	4	275	0	1	0	0	0	0	0	0	0	609	1015	35	4		4	ANGEL2	1	213173739	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	112425	213173739	36076882	475	26162										
PROX1	0	genome.wustl.edu	37	chr1	214171544	214171544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctctccttgtcgctcataAagtccgagtgcggcgatctt	11	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214171544	214171544	A	C	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.1666	p.K556Q	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	220	0	0	175	33	15.87	-	-	-	C	214171544	A	C	214171544	3	2	275	1	0	0	0	0	1	0	0	0	12641	15	1	5	1668	5	PROX1	1	214171544	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	997805	214171544	35079077	476	26163										
SMYD2	0	genome.wustl.edu	37	chr1	214503571	214503571	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagaaatgaccggttaagaGattcttatttctttacctgt	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214503571	214503571	G	A	SNP	SMYD2	ENST00000366957	human	ensembl	69_37n	1	known	missense	c.766	p.D256N	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499	167	0	0	105	15	12.5	-	-	-	A	214503571	G	A	214503571	3	1	275	1	0	0	0	0	1	0	0	0	14911	942	33	2	796	2	SMYD2	1	214503571	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	332027	214503571	34747050	477	26164										
PTPN14	0	genome.wustl.edu	37	chr1	214537857	214537857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcccagaatgactcacttCgttatgttccaagcagtaga	8	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214537857	214537857	C	T	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.3433	p.E1145K	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	171	0	0	123	48	27.91	-	-	-	T	214537857	C	T	214537857	3	4	275	1	0	0	0	0	1	0	0	0	12864	893	31	1	138	1	PTPN14	1	214537857	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34286	214537857	34712764	478	26165										
PTPN14	0	genome.wustl.edu	37	chr1	214543016	214543016	+	Missense_Mutation	SNP	T	T	G													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgggccagtatcggtggcTtttggttcgtccaccctcct							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214543016	214543016	T	G	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.3055	p.S1019R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	213	0	0	197	29	12.78	-	-	-	G	214543016	T	G	214543016	3	3	275	1	0	0	0	0	1	0	0	0	12864	1609	56	5	520	5	PTPN14	1	214543016	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	5159	214543016	34707605	479	26166	235	2								
PTPN14	0	genome.wustl.edu	37	chr1	214543024	214543024	+	Missense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtatcggtggcttttggttCgtccaccctcctaaatcaca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214543024	214543024	C	T	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.3047	p.R1016Q	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	190	0	0	179	28	13.53	-	-	-	T	214543024	C	T	214543024	3	4	275	1	0	0	0	0	1	0	0	0	12864	884	31	1	528	1	PTPN14	1	214543024	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8	214543024	34707597	480	26167	235	2								
CENPF	0	genome.wustl.edu	37	chr1	214816319	214816319	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaccccttcggccccagcGaagggtgttgaagagcttga	13	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214816319	214816319	G	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	silent	c.4638	p.A1546	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	44	0	0	32	21	39.62	-	-	-	A	214816319	G	A	214816319	2	1	275	1	0	0	0	0	0	0	0	1	3260	1045	37	1		1	CENPF	1	214816319	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	273295	214816319	34434302	481	26168										
CENPF	0	genome.wustl.edu	37	chr1	214818897	214818897	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaagagcttgagtctcatcAaagtgagtgtctccattgca	9	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214818897	214818897	A	C	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.5984	p.Q1995P	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	122	0	0	99	47	32.19	-	-	-	C	214818897	A	C	214818897	3	2	275	1	0	0	0	0	1	0	0	0	3260	130	5	5	6030	5	CENPF	1	214818897	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2578	214818897	34431724	482	26169										
CENPF	0	genome.wustl.edu	37	chr1	214820197	214820197	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcaagaaaaagagcaagaGaaagtacagatgaaagaaaa	10	3	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	214820197	214820197	G	T	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.7284	p.E2428D	0.996	pfam_Centromere_CenpF_leu-rich_rpt	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	117	0	0	91	11	10.78	-	-	-	T	214820197	G	T	214820197	3	4	275	1	0	0	0	0	1	0	0	0	3260	933	33	2	7330	2	CENPF	1	214820197	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1300	214820197	34430424	483	26170										
KCTD3	0	genome.wustl.edu	37	chr1	215775437	215775437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgttttagatatgcagaaGttccccttgcgaatgaaaga	9	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	215775437	215775437	G	A	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	silent	c.1032	p.K344	1.000	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	112	0	0	85	17	16.5	-	-	-	A	215775437	G	A	215775437	2	1	275	1	0	0	0	0	0	0	0	1	8164	1020	36	4		4	KCTD3	1	215775437	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	955240	215775437	33475184	484	26171										
USH2A	0	genome.wustl.edu	37	chr1	215847721	215847721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacccccttggctgttgctgGcagttactgtgtagctatac	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	215847721	215847721	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13532	p.A4511V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	243	0	0	171	56	24.67	-	-	-	A	215847721	G	A	215847721	3	1	275	1	0	0	0	0	1	0	0	0	17133	1203	42	4	2116	4	USH2A	1	215847721	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72284	215847721	33402900	485	26172										
USH2A	0	genome.wustl.edu	37	chr1	216019236	216019236	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattgaagacagagataaaGatccaatactctgtgtttgg	9	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	216019236	216019236	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.8985	p.I2995	0.550	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	230	0	0	235	36	13.28	-	-	-	T	216019236	G	T	216019236	2	4	275	1	0	0	0	0	0	0	0	1	17133	932	33	2		2	USH2A	1	216019236	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	171515	216019236	33231385	486	26173										
USH2A	0	genome.wustl.edu	37	chr1	216062266	216062266	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatttccaggagttctcaaGtatagacggccatgtagata	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	216062266	216062266	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	nonsense	c.7725	p.Y2575*	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	224	2	0.88	195	72	26.87	-	-	-	T	216062266	G	T	216062266	4	4	275	1	0	0	0	0	0	1	0	0	17133	1024	36	4	8011	4	USH2A	1	216062266	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43030	216062266	33188355	487	26174										
GPATCH2	0	genome.wustl.edu	37	chr1	217793291	217793291	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactttgttcttggtaaattCttgatactggtaggctctat	9	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	217793291	217793291	C	A	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	nonsense	c.607	p.E203*	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	358	0	0	265	88	24.93	-	-	-	A	217793291	C	A	217793291	4	1	275	1	0	0	0	0	0	1	0	0	6641	922	32	2	1015	2	GPATCH2	1	217793291	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1731025	217793291	31457330	488	26175										
TGFB2	0	genome.wustl.edu	37	chr1	218607442	218607442	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agattctcaagtccaaagatTtaacatctccaacccagcgc	5	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	218607442	218607442	T	G	SNP	TGFB2	ENST00000366929	human	ensembl	69_37n	1	known	missense	c.613	p.L205V	0.121	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGFb2	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969	151	0	0	143	28	16.37	-	-	-	G	218607442	T	G	218607442	3	3	275	1	0	0	0	0	1	0	0	0	15913	1838	64	5	627	5	TGFB2	1	218607442	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	814151	218607442	30643179	489	26176										
LYPLAL1	0	genome.wustl.edu	37	chr1	219366644	219366644	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttcacttttgtctaattCtatacatcaaatcttacttg	3	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	219366644	219366644	C	A	SNP	LYPLAL1	ENST00000496776	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LYPLAL1	HGNC	ENSG00000143353	103	0	0	90	50	35.71	-	-	-	A	219366644	C	A	219366644	1	1	275	0	1	0	0	0	0	0	0	0	9185	928	32	2		2	LYPLAL1	1	219366644	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	759202	219366644	29883977	490	26177										
SLC30A10	0	genome.wustl.edu	37	chr1	220091781	220091781	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcacatagaatatgatggcCgtgatgaccacaaccacgga	10	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220091781	220091781	C	T	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	silent	c.774	p.T258	0.009	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	106	0	0	62	49	44.14	-	-	-	T	220091781	C	T	220091781	2	4	275	1	0	0	0	0	0	0	0	1	14643	639	23	1		1	SLC30A10	1	220091781	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	725137	220091781	29158840	491	26178										
IARS2	0	genome.wustl.edu	37	chr1	220313567	220313567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgattttggaaaagttgttCggctgttacggacgttttat	11	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220313567	220313567	C	T	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	missense	c.2350	p.R784W	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	134	0	0	98	14	12.5	-	-	-	T	220313567	C	T	220313567	3	4	275	1	0	0	0	0	1	0	0	0	7528	875	31	1	2424	1	IARS2	1	220313567	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	221786	220313567	28937054	492	26179										
IARS2	0	genome.wustl.edu	37	chr1	220315228	220315228	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggatgtaatagttcgttCttttgctcccattcttcctc	6	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220315228	220315228	C	A	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	missense	c.2498	p.S833Y	0.840	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	327	0	0	230	29	11.2	-	-	-	A	220315228	C	A	220315228	3	1	275	1	0	0	0	0	1	0	0	0	7528	913	32	2	2576	2	IARS2	1	220315228	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1661	220315228	28935393	493	26180										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220340907	220340907	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaacttctgttaacaccttCtttgggttcatctgggtttt	8	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220340907	220340907	C	A	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	nonsense	c.2917	p.E973*	0.999	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	323	0	0	188	65	25.69	-	-	-	A	220340907	C	A	220340907	4	1	275	1	0	0	0	0	0	1	0	0	13019	922	32	2	1308	2	RAB3GAP2	1	220340907	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25679	220340907	28909714	494	26181										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220440365	220440365	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catccgaccttcaatcatttCggggggcaggtagtccaggg	13	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220440365	220440365	C	T	SNP	RAB3GAP2	ENST00000462353	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	76	0	0	78	14	15.05	-	-	-	T	220440365	C	T	220440365	1	4	275	0	1	0	0	0	0	0	0	0	13019	899	31	1		1	RAB3GAP2	1	220440365	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	99458	220440365	28810256	495	26182										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220440480	220440480	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgatccaagaagtaagttCtctggcttaatgtctctatg	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	220440480	220440480	C	T	SNP	RAB3GAP2	ENST00000462353	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	122	0	0	93	27	22.31	-	-	-	T	220440480	C	T	220440480	1	4	275	0	1	0	0	0	0	0	0	0	13019	928	32	2		2	RAB3GAP2	1	220440480	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115	220440480	28810141	496	26183										
HLX	0	genome.wustl.edu	37	chr1	221053716	221053716	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccggccccctccagcaaaGacctcaaatttggaattgac	7	16	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	221053716	221053716	G	T	SNP	HLX	ENST00000366903	human	ensembl	69_37n	1	known	missense	c.517	p.D173Y	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630	52	0	0	15	10	40	-	-	-	T	221053716	G	T	221053716	3	4	275	1	0	0	0	0	1	0	0	0	7267	942	33	2	519	2	HLX	1	221053716	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	613236	221053716	28196905	497	26184										
HHIPL2	0	genome.wustl.edu	37	chr1	222716994	222716994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataataaatatagaacttgcGattgtggcggaatttggggt	12	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	222716994	222716994	G	A	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	missense	c.859	p.R287C	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	122	0	0	90	40	30.77	-	-	-	A	222716994	G	A	222716994	3	1	275	1	0	0	0	0	1	0	0	0	7145	1058	37	1	1347	1	HHIPL2	1	222716994	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1663278	222716994	26533627	498	26185										
DISP1	0	genome.wustl.edu	37	chr1	223177301	223177301	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaccagctgcttcattgaGacattcaaacagtggatgga	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	223177301	223177301	G	A	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	silent	c.2562	p.E854	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	73	0	0	61	13	17.57	-	-	-	A	223177301	G	A	223177301	2	1	275	1	0	0	0	0	0	0	0	1	4575	933	33	2		2	DISP1	1	223177301	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	460307	223177301	26073320	499	26186										
DISP1	0	genome.wustl.edu	37	chr1	223177730	223177730	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagttgctgttgcatttagCgtgatgctgctgacaacttg	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	223177730	223177730	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	silent	c.2991	p.S997	0.042	pfam_Patched,pfam_MMPL-typ	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	63	0	0	59	9	13.04	-	-	-	T	223177730	C	T	223177730	2	4	275	1	0	0	0	0	0	0	0	1	4575	767	27	1		1	DISP1	1	223177730	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	429	223177730	26072891	500	26187										
DISP1	0	genome.wustl.edu	37	chr1	223177877	223177877	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcaccatttcggttgccgtCggcttgtctgtagactttgc	11	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	223177877	223177877	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	silent	c.3138	p.V1046	0.000	pfam_Patched,pfam_MMPL-typ	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	106	0	0	75	11	12.79	-	-	-	T	223177877	C	T	223177877	2	4	275	1	0	0	0	0	0	0	0	1	4575	871	31	1		1	DISP1	1	223177877	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	147	223177877	26072744	501	26188										
TLR5	0	genome.wustl.edu	37	chr1	223283803	223283803	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattgctcctttgattaggaGatggttgctacagtttgcaa	10	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	223283803	223283803	G	A	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	silent	c.2571	p.I857	0.149	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	123	0	0	121	17	12.32	-	-	-	A	223283803	G	A	223283803	2	1	275	1	0	0	0	0	0	0	0	1	16049	932	33	2		2	TLR5	1	223283803	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	105926	223283803	25966818	502	26189										
TLR5	0	genome.wustl.edu	37	chr1	223285026	223285026	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttaaaatgagaatctggaGatgaggtacccgtaggagaa	12	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	223285026	223285026	G	T	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	missense	c.1348	p.L450I	0.278	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	139	0	0	94	17	15.32	-	-	-	T	223285026	G	T	223285026	3	4	275	1	0	0	0	0	1	0	0	0	16049	942	33	2	1232	2	TLR5	1	223285026	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1223	223285026	25965595	503	26190										
TP53BP2	0	genome.wustl.edu	37	chr1	224002010	224002010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgttcctctgacttccaaatCgttgaagaacatcaaacatt	5	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	224002010	224002010	C	T	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.221	p.R74Q	0.237	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	104	0	0	81	35	29.91	-	-	-	T	224002010	C	T	224002010	3	4	275	1	0	0	0	0	1	0	0	0	16480	884	31	1	3247	1	TP53BP2	1	224002010	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	716984	224002010	25248611	504	26191										
CNIH4	0	genome.wustl.edu	37	chr1	224553692	224553692	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgccacttggaatatatatCggtgagtatagtttgtttac	9	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	224553692	224553692	C	T	SNP	CNIH4	ENST00000465271	human	ensembl	69_37n	1	known	nonsense	c.250	p.R84*	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH4	HGNC	ENSG00000143771	447	0	0	460	71	13.37	-	-	-	T	224553692	C	T	224553692	4	4	275	1	0	0	0	0	0	1	0	0	3635	898	31	1	260	1	CNIH4	1	224553692	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	551682	224553692	24696929	505	26192										
TMEM63A	0	genome.wustl.edu	37	chr1	226048687	226048687	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacttgcaggcattgaaatCtttcaggatgctgcaaggaa	10	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	226048687	226048687	C	A	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366Y	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	119	1	0.83	58	30	34.09	-	-	-	A	226048687	C	A	226048687	3	1	275	1	0	0	0	0	1	0	0	0	16285	913	32	2	1371	2	TMEM63A	1	226048687	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1494995	226048687	23201934	506	26193										
CDC42BPA	0	genome.wustl.edu	37	chr1	227333377	227333377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgctacaaatgagccttCgaataagatccttagcattt	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	227333377	227333377	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.956	p.R319Q	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	257	0	0	201	36	15.13	-	-	-	T	227333377	C	T	227333377	3	4	275	1	0	0	0	0	1	0	0	0	3101	884	31	1	4319	1	CDC42BPA	1	227333377	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1284690	227333377	21917244	507	26194										
ZNF678	0	genome.wustl.edu	37	chr1	227842301	227842301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccttactgaacataagaGaattcatactggagagaagc	8	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	227842301	227842301	G	T	SNP	ZNF678	ENST00000397097	human	ensembl	69_37n	1	known	missense	c.515	p.R172I	0.760	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450	99	0	0	70	15	17.65	-	-	-	T	227842301	G	T	227842301	3	4	275	1	0	0	0	0	1	0	0	0	18181	942	33	2	529	2	ZNF678	1	227842301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	508924	227842301	21408320	508	26195										
OBSCN	0	genome.wustl.edu	37	chr1	228459879	228459879	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacgccggggagtacagctgCgaggctgggggccagcggct	20	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	228459879	228459879	C	T	SNP	OBSCN	ENST00000359599	human	ensembl	69_37n	1	known	silent	c.1359	p.C453	0.511	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon	OBSCN	HGNC	ENSG00000154358	9	0	0	7	9	56.25	-	-	-	T	228459879	C	T	228459879	2	4	275	1	0	0	0	0	0	0	0	1	10885	783	27	1		1	OBSCN	1	228459879	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	617578	228459879	20790742	509	26196										
OBSCN	0	genome.wustl.edu	37	chr1	228494979	228494979	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccccaggcccaagttcaaGacccggcttcagagtctgga	11	14	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	228494979	228494979	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.12213	p.K4071N	0.885	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	77	0	0	53	12	18.46	-	-	-	T	228494979	G	T	228494979	3	4	275	1	0	0	0	0	1	0	0	0	10885	933	33	2	12391	2	OBSCN	1	228494979	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35100	228494979	20755642	510	26197										
COG2	0	genome.wustl.edu	37	chr1	230805208	230805208	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggcactgcttgcggacttAcgccacgattgacaagacac	10	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	230805208	230805208	A	G	SNP	COG2	ENST00000366669	human	ensembl	69_37n	1	known	missense	c.701	p.Y234C	0.979	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	297	0	0	166	66	28.45	-	-	-	G	230805208	A	G	230805208	3	3	275	1	0	0	0	0	1	0	0	0	3688	391	14	5	727	5	COG2	1	230805208	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2310229	230805208	18445413	511	26198										
COG2	0	genome.wustl.edu	37	chr1	230814793	230814793	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttgcctgtttattttcaAataaggttggtcatctattc	6	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	230814793	230814793	A	C	SNP	COG2	ENST00000366669	human	ensembl	69_37n	1	known	missense	c.1161	p.Q387H	0.999	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	494	0	0	328	149	31.24	-	-	-	C	230814793	A	C	230814793	3	2	275	1	0	0	0	0	1	0	0	0	3688	11	1	5	1199	5	COG2	1	230814793	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	9585	230814793	18435828	512	26199										
COG2	0	genome.wustl.edu	37	chr1	230822810	230822810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggtccttcggaaacaaagCctgtggtttccatttcccgc	10	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	230822810	230822810	C	T	SNP	COG2	ENST00000366669	human	ensembl	69_37n	1	known	missense	c.1510	p.P504S	0.547	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	89	0	0	79	35	30.7	-	-	-	T	230822810	C	T	230822810	3	4	275	1	0	0	0	0	1	0	0	0	3688	739	26	4	1560	4	COG2	1	230822810	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8017	230822810	18427811	513	26200										
GNPAT	0	genome.wustl.edu	37	chr1	231411057	231411057	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaattcacaagtcagcttCtcgatcaaggtcagtcactg	8	10	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	231411057	231411057	C	T	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	missense	c.1834	p.L612F	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	318	0	0	373	43	10.34	-	-	-	T	231411057	C	T	231411057	3	4	275	1	0	0	0	0	1	0	0	0	6593	913	32	2	1884	2	GNPAT	1	231411057	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	588247	231411057	17839564	514	26201										
TSNAX	0	genome.wustl.edu	37	chr1	231696925	231696925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacacttcatcaaaacacGatcattaattagtatggatg	5	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	231696925	231696925	G	A	SNP	TSNAX	ENST00000366639	human	ensembl	69_37n	1	known	missense	c.419	p.R140Q	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSNAX	HGNC	ENSG00000116918	125	0	0	90	23	20.35	-	-	-	A	231696925	G	A	231696925	3	1	275	1	0	0	0	0	1	0	0	0	16727	1058	37	1	437	1	TSNAX	1	231696925	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	285868	231696925	17553696	515	26202										
SIPA1L2	0	genome.wustl.edu	37	chr1	232577041	232577041	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaacaaaggacttacgtgaGaaagcttattgggggaatct	12	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	232577041	232577041	G	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.3638	p.S1213Y	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	140	0	0	107	30	21.9	-	-	-	T	232577041	G	T	232577041	3	4	275	1	0	0	0	0	1	0	0	0	14419	942	33	2	1570	2	SIPA1L2	1	232577041	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	880116	232577041	16673580	516	26203										
SIPA1L2	0	genome.wustl.edu	37	chr1	232579360	232579360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagtacccgtcgtagcccActtgtggtctccagggtccg	11	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	232579360	232579360	A	G	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.3425	p.V1142A	0.999	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	260	0	0	130	48	26.67	-	-	-	G	232579360	A	G	232579360	3	3	275	1	0	0	0	0	1	0	0	0	14419	159	6	5	1791	5	SIPA1L2	1	232579360	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2319	232579360	16671261	517	26204										
SIPA1L2	0	genome.wustl.edu	37	chr1	232650068	232650068	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccatggcttcgttgatatTaaacaaaatgctctggacat	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	232650068	232650068	T	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.1018	p.N340Y	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	175	0	0	79	43	35.25	-	-	-	A	232650068	T	A	232650068	3	1	275	1	0	0	0	0	1	0	0	0	14419	1754	61	5	4234	5	SIPA1L2	1	232650068	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	70708	232650068	16600553	518	26205										
PCNXL2	0	genome.wustl.edu	37	chr1	233134180	233134180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgggcattgcaatccttccGcatcctgtgggagggagaag	15	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	233134180	233134180	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.5608	p.R1870W	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	73	0	0	44	24	35.29	-	-	-	A	233134180	G	A	233134180	3	1	275	1	0	0	0	0	1	0	0	0	11665	1086	38	1	817	1	PCNXL2	1	233134180	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	484112	233134180	16116441	519	26206										
SLC35F3	0	genome.wustl.edu	37	chr1	234367368	234367368	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagctgaccttcaggaagttCgacgcgcccttcaccctcac	8	16	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	234367368	234367368	C	T	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	silent	c.489	p.F163	0.997	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	128	0	0	50	7	12.28	-	-	-	T	234367368	C	T	234367368	2	4	275	1	0	0	0	0	0	0	0	1	14679	883	31	1		1	SLC35F3	1	234367368	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1233188	234367368	14883253	520	26207										
ARID4B	0	genome.wustl.edu	37	chr1	235345863	235345863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttcataatcagtatcttCggataatacttctatatctt	3	8	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	235345863	235345863	C	T	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.2371	p.E791K	0.999	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	288	0	0	364	42	10.34	-	-	-	T	235345863	C	T	235345863	3	4	275	1	0	0	0	0	1	0	0	0	922	893	31	1	1587	1	ARID4B	1	235345863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	978495	235345863	13904758	521	26208										
LYST	0	genome.wustl.edu	37	chr1	235909794	235909794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgcattttcatcagaagcGattcagtttgagcaagggga	11	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	235909794	235909794	G	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.7814	p.S2605L	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	189	0	0	120	52	30.23	-	-	-	A	235909794	G	A	235909794	3	1	275	1	0	0	0	0	1	0	0	0	9195	1059	37	1	3691	1	LYST	1	235909794	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	563931	235909794	13340827	522	26209										
LYST	0	genome.wustl.edu	37	chr1	235972815	235972815	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatgatgctgaatgaattCttgaaccaaatccatggctt	7	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	235972815	235972815	C	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	nonsense	c.1303	p.E435*	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	83	0	0	63	7	10	-	-	-	A	235972815	C	A	235972815	4	1	275	1	0	0	0	0	0	1	0	0	9195	922	32	2	10298	2	LYST	1	235972815	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	63021	235972815	13277806	523	26210										
ACTN2	0	genome.wustl.edu	37	chr1	236912558	236912558	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgtccacagcattgaggaGatccaggtaatggaaccgca	11	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	236912558	236912558	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.1650	p.E550	0.882	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	106	0	0	105	13	11.02	-	-	-	A	236912558	G	A	236912558	2	1	275	1	0	0	0	0	0	0	0	1	205	933	33	2		2	ACTN2	1	236912558	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	939743	236912558	12338063	524	26211										
RYR2	0	genome.wustl.edu	37	chr1	237580419	237580419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagactagagacgctaagaGttgcgtaagtagaacttcta	12	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237580419	237580419	G	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.838	p.V280L	1.000	pfam_MIR,superfamily_MIR,prints_Ryan_recept	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	215	0	0	201	25	11.06	-	-	-	C	237580419	G	C	237580419	3	2	275	1	0	0	0	0	1	0	0	0	13855	1029	36	4	886	4	RYR2	1	237580419	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	667861	237580419	11670202	525	26212										
RYR2	0	genome.wustl.edu	37	chr1	237664017	237664017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccccccaataggttgtaTtgctcgtactgtaagctcac	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237664017	237664017	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2204	p.I735T	0.977	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	326	1	0.31	355	43	10.78	-	-	-	C	237664017	T	C	237664017	3	2	275	1	0	0	0	0	1	0	0	0	13855	1493	52	5	2292	5	RYR2	1	237664017	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	83598	237664017	11586604	526	26213										
RYR2	0	genome.wustl.edu	37	chr1	237777817	237777817	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaccatacagatgctgacaGaagctgttaaagagggcagt	11	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237777817	237777817	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5383	p.E1795K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	148	0	0	163	27	14.21	-	-	-	A	237777817	G	A	237777817	3	1	275	1	0	0	0	0	1	0	0	0	13855	943	33	2	5535	2	RYR2	1	237777817	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	113800	237777817	11472804	527	26214										
RYR2	0	genome.wustl.edu	37	chr1	237778045	237778045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagagctcagtgtggacgatGcaaagctgcaaggagctggt	15	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237778045	237778045	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5611	p.A1871T	0.001	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	117	1	0.85	136	44	24.44	-	-	-	A	237778045	G	A	237778045	3	1	275	1	0	0	0	0	1	0	0	0	13855	1319	46	4	5763	4	RYR2	1	237778045	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	228	237778045	11472576	528	26215										
RYR2	0	genome.wustl.edu	37	chr1	237947261	237947261	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctcgactacgaagagttCgtcaaacgcttccacgaacc	7	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237947261	237947261	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.12267	p.F4089	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	113	0	0	87	17	16.04	-	-	-	T	237947261	C	T	237947261	2	4	275	1	0	0	0	0	0	0	0	1	13855	883	31	1		1	RYR2	1	237947261	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	169216	237947261	11303360	529	26216										
RYR2	0	genome.wustl.edu	37	chr1	237947456	237947456	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaaacgcatcgagagggtCtattttgaaatcagtgagtc	11	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237947456	237947456	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.12462	p.V4154	0.009	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	120	0	0	99	32	24.43	-	-	-	A	237947456	C	A	237947456	2	1	275	1	0	0	0	0	0	0	0	1	13855	900	32	2		2	RYR2	1	237947456	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	195	237947456	11303165	530	26217										
RYR2	0	genome.wustl.edu	37	chr1	237969518	237969518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttgccgctcaccttctcGacattgctatgggattcaag	8	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237969518	237969518	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.14251	p.D4751N	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	321	0	0	374	56	12.93	-	-	-	A	237969518	G	A	237969518	3	1	275	1	0	0	0	0	1	0	0	0	13855	1058	37	1	14627	1	RYR2	1	237969518	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22062	237969518	11281103	531	26218										
RYR2	0	genome.wustl.edu	37	chr1	237972336	237972336	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtgacgatatgctaacaGtaagttcataacctttgatc	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	237972336	237972336	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	splice_site	c.14451+1	e102+1	1.000	-	-	-	no_errors	RYR2	HGNC	ENSG00000198626	132	0	0	164	30	15.38	-	-	-	T	237972336	G	T	237972336	5	4	275	1	0	0	0	0	0	0	1	0	13855	1043	36	4	14832	4	RYR2	1	237972336	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2818	237972336	11278285	532	26219										
ZP4	0	genome.wustl.edu	37	chr1	238046140	238046140	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaactgttgtcaaaatttCttcttcctgttagagaaatg	8	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	238046140	238046140	C	A	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.1397	p.R466I	0.926	pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	160	0	0	153	17	10	-	-	-	A	238046140	C	A	238046140	3	1	275	1	0	0	0	0	1	0	0	0	18311	913	32	2	233	2	ZP4	1	238046140	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73804	238046140	11204481	533	26220										
CHRM3	0	genome.wustl.edu	37	chr1	240070851	240070851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggctgcccccgggaaccGtcactcatttcggcagctac	11	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	240070851	240070851	G	A	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	missense	c.100	p.V34I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	84	0	0	41	25	37.88	-	-	-	A	240070851	G	A	240070851	3	1	275	1	0	0	0	0	1	0	0	0	3407	1145	40	1	102	1	CHRM3	1	240070851	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2024711	240070851	9179770	534	26221										
FMN2	0	genome.wustl.edu	37	chr1	240519171	240519171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcaaaagagcatatgcaGcctttcaaggaaaacatgga	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	240519171	240519171	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.4821	p.Q1607	0.999	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	300	0	0	261	41	13.49	-	-	-	A	240519171	G	A	240519171	2	1	275	1	0	0	0	0	0	0	0	1	5996	962	34	4		4	FMN2	1	240519171	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	448320	240519171	8731450	535	26222										
FMN2	0	genome.wustl.edu	37	chr1	240601500	240601500	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaagagaacaaacttcttCtacaagagaggtaggtattt	9	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	240601500	240601500	C	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.5050	p.L1684I	1.000	superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	122	0	0	115	18	13.53	-	-	-	A	240601500	C	A	240601500	3	1	275	1	0	0	0	0	1	0	0	0	5996	912	32	2	5112	2	FMN2	1	240601500	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	82329	240601500	8649121	536	26223										
KMO	0	genome.wustl.edu	37	chr1	241714340	241714340	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattccctatgggacaaagtCtcaggtaggtttaccccgga	10	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	241714340	241714340	C	A	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.308	p.S103Y	0.476	pfam_mOase_FAD-bd	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	358	0	0	278	38	12.03	-	-	-	A	241714340	C	A	241714340	3	1	275	1	0	0	0	0	1	0	0	0	8477	913	32	2	322	2	KMO	1	241714340	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1112840	241714340	7536281	537	26224										
CHML	0	genome.wustl.edu	37	chr1	241798009	241798009	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgcgttaagaccatctaTtgtagtgcaagatgattctg	10	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	241798009	241798009	T	G	SNP	CHML	ENST00000366553	human	ensembl	69_37n	-1	known	missense	c.1060	p.I354L	0.001	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	206	0	0	145	43	22.87	-	-	-	G	241798009	T	G	241798009	3	3	275	1	0	0	0	0	1	0	0	0	3380	1493	52	5	914	5	CHML	1	241798009	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	83669	241798009	7452612	538	26225										
ADSS	0	genome.wustl.edu	37	chr1	244587324	244587324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactccgagcagctttggacGaataaactgggccaatgccc	10	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	244587324	244587324	G	A	SNP	ADSS	ENST00000366535	human	ensembl	69_37n	-1	known	missense	c.512	p.S171L	1.000	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687	278	0	0	307	64	17.25	-	-	-	A	244587324	G	A	244587324	3	1	275	1	0	0	0	0	1	0	0	0	347	1059	37	1	890	1	ADSS	1	244587324	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2789315	244587324	4663297	539	26226										
C1orf101	0	genome.wustl.edu	37	chr1	244723973	244723973	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcattttgtcacaggctAaaggaagaagaagcaccttt	8	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	244723973	244723973	A	G	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1033	p.K345E	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	173	0	0	117	93	44.29	-	-	-	G	244723973	A	G	244723973	3	3	275	1	0	0	0	0	1	0	0	0	1995	363	13	5	1071	5	C1orf101	1	244723973	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	136649	244723973	4526648	540	26227										
C1orf101	0	genome.wustl.edu	37	chr1	244724194	244724194	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatgtaacgtcaccaaaaaGattttcttagtgatatataa	6	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	244724194	244724194	G	T	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1254	p.K418N	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	265	1	0.38	267	31	10.37	-	-	-	T	244724194	G	T	244724194	3	4	275	1	0	0	0	0	1	0	0	0	1995	933	33	2	1292	2	C1orf101	1	244724194	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	221	244724194	4526427	541	26228										
C1orf101	0	genome.wustl.edu	37	chr1	244724432	244724432	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcaaatgacagcattattCatgaagttttcataggtaag	7	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	244724432	244724432	C	A	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1492	p.H498N	0.505	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	79	0	0	63	8	11.27	-	-	-	A	244724432	C	A	244724432	3	1	275	1	0	0	0	0	1	0	0	0	1995	826	29	2	1530	2	C1orf101	1	244724432	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	238	244724432	4526189	542	26229										
HNRNPU	0	genome.wustl.edu	37	chr1	245027306	245027306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcctagctccatctggtCgccgtccagagcggagattc	10	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	245027306	245027306	C	T	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.304	p.D102N	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	18	0	0	17	6	26.09	-	-	-	T	245027306	C	T	245027306	3	4	275	1	0	0	0	0	1	0	0	0	7324	884	31	1	2229	1	HNRNPU	1	245027306	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	302874	245027306	4223315	543	26230										
KIF26B	0	genome.wustl.edu	37	chr1	245850446	245850446	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcgaggggtacatccccatGaagaccaatatcacagttta	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	245850446	245850446	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.4161	p.M1387I	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	22	0	0	20	4	16.67	-	-	-	T	245850446	G	T	245850446	3	4	275	1	0	0	0	0	1	0	0	0	8347	1290	45	2	4207	2	KIF26B	1	245850446	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	823140	245850446	3400175	544	26231										
AHCTF1	0	genome.wustl.edu	37	chr1	247076641	247076641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccactccaaaaagccatCgcagacttggatgtaaatgc	8	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	247076641	247076641	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.476	p.R159Q	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	261	2	0.76	134	101	42.98	-	-	-	T	247076641	C	T	247076641	3	4	275	1	0	0	0	0	1	0	0	0	408	884	31	1	6483	1	AHCTF1	1	247076641	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1226195	247076641	2173980	545	26232										
OR11L1	0	genome.wustl.edu	37	chr1	248004337	248004337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcctcaagctgtagataaCtgggttcagcagtggtgtga	13	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	248004337	248004337	C	T	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.862	p.V288I	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	173	0	0	182	48	20.69	-	-	-	T	248004337	C	T	248004337	3	4	275	1	0	0	0	0	1	0	0	0	11003	565	20	4	110	4	OR11L1	1	248004337	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	927696	248004337	1246284	546	26233										
OR2L3	0	genome.wustl.edu	37	chr1	248224539	248224539	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtcccagcaatggtgactCtggcctgcatggacacctgg	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	248224539	248224539	C	T	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	silent	c.556	p.L186	0.037	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	671	0	0	470	313	39.82	-	-	-	T	248224539	C	T	248224539	2	4	275	1	0	0	0	0	0	0	0	1	11081	912	32	2		2	OR2L3	1	248224539	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	220202	248224539	1026082	547	26234										
OR2M4	0	genome.wustl.edu	37	chr1	248402650	248402650	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcctcatgaatccgaaactCtgtgtcttcatgactgttgc	7	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	248402650	248402650	C	T	SNP	OR2M4	ENST00000306687	human	ensembl	69_37n	1	known	silent	c.420	p.L140	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M4	HGNC	ENSG00000171180	243	0	0	294	91	23.64	-	-	-	T	248402650	C	T	248402650	2	4	275	1	0	0	0	0	0	0	0	1	11085	900	32	2		2	OR2M4	1	248402650	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178111	248402650	847971	548	26235										
OR2G6	0	genome.wustl.edu	37	chr1	248685019	248685019	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagatcagcctcagctagaGaggtttctttttgccatcat	8	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	248685019	248685019	G	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	missense	c.72	p.E24D	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	441	0	0	455	103	18.46	-	-	-	T	248685019	G	T	248685019	3	4	275	1	0	0	0	0	1	0	0	0	11073	933	33	2	74	2	OR2G6	1	248685019	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	282369	248685019	565602	549	26236										
OR2T10	0	genome.wustl.edu	37	chr1	248756561	248756561	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgctgaatctcatgggatCtgcagaaggggaagctcatg	14	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	1	248756561	248756561	C	A	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	missense	c.509	p.R170I	0.049	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	115	0	0	46	49	51.58	-	-	-	A	248756561	C	A	248756561	3	1	275	1	0	0	0	0	1	0	0	0	11090	913	32	2	432	2	OR2T10	1	248756561	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71542	248756561	494060	550	26237										
SNTG2	0	genome.wustl.edu	37	chr2	1263154	1263154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgcaggtgagcacattcGattgggtgcgagcagaaagg	15	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	1263154	1263154	G	A	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	1	known	missense	c.1018	p.D340N	0.998	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	171	0	0	144	17	10.56	-	-	-	A	1263154	G	A	1263154	3	1	275	1	0	0	0	0	1	0	0	0	14964	1058	37	1	1068	1	SNTG2	2	1263154	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		1263154	241936219	551	26238										
TSSC1	0	genome.wustl.edu	37	chr2	3200774	3200774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcccttcccttccagggaCgctgagctggccagctggga	13	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	3200774	3200774	C	T	SNP	TSSC1	ENST00000435721	human	ensembl	69_37n	-1	known	missense	c.374	p.R125H	0.000	NULL	NULL	-	no_errors	TSSC1	HGNC	ENSG00000032389	44	0	0	18	4	18.18	-	-	-	T	3200774	C	T	3200774	3	4	275	1	0	0	0	0	1	0	0	0	16762	523	19	1	648	1	TSSC1	2	3200774	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1937620	3200774	239998599	552	26239										
ALLC	0	genome.wustl.edu	37	chr2	3743393	3743393	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaacctgcagacctagtgGccatcgcttttgggggtgtc	13	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	3743393	3743393	G	C	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	1	known	missense	c.598	p.A200P	0.001	superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	178	0	0	209	31	12.92	-	-	-	C	3743393	G	C	3743393	3	2	275	1	0	0	0	0	1	0	0	0	534	1203	42	4	624	4	ALLC	2	3743393	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	542619	3743393	239455980	553	26240										
ASAP2	0	genome.wustl.edu	37	chr2	9484865	9484865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacttatccacaaggatccGaaaagtgtggcagaaaagga	10	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	9484865	9484865	G	A	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	missense	c.959	p.R320Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	375	0	0	253	110	30.3	-	-	-	A	9484865	G	A	9484865	3	1	275	1	0	0	0	0	1	0	0	0	1015	1058	37	1	1001	1	ASAP2	2	9484865	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5741472	9484865	233714508	554	26241										
ASAP2	0	genome.wustl.edu	37	chr2	9496399	9496399	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaaataacatcgtccaaGaactgacaaaggagatcatc	8	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	9496399	9496399	G	T	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	nonsense	c.1252	p.E418*	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	132	0	0	123	19	13.38	-	-	-	T	9496399	G	T	9496399	4	4	275	1	0	0	0	0	0	1	0	0	1015	943	33	2	1306	2	ASAP2	2	9496399	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11534	9496399	233702974	555	26242										
NOL10	0	genome.wustl.edu	37	chr2	10808824	10808824	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcaggtatcgtccttgttCtaagtttaacctataaactt	5	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	10808824	10808824	C	A	SNP	NOL10	ENST00000381685	human	ensembl	69_37n	-1	known	nonsense	c.490	p.E164*	1.000	superfamily_WD40_repeat_dom	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	272	0	0	223	90	28.75	-	-	-	A	10808824	C	A	10808824	4	1	275	1	0	0	0	0	0	1	0	0	10592	922	32	2	1636	2	NOL10	2	10808824	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1312425	10808824	232390549	556	26243										
ATP6V1C2	0	genome.wustl.edu	37	chr2	10915117	10915117	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaaggttcactgttcgtGaattttactatgatgagaag	9	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	10915117	10915117	G	A	SNP	ATP6V1C2	ENST00000272238	human	ensembl	69_37n	1	known	missense	c.745	p.E249K	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882	226	0	0	122	28	18.54	-	-	-	A	10915117	G	A	10915117	3	1	275	1	0	0	0	0	1	0	0	0	1185	1291	45	2	779	2	ATP6V1C2	2	10915117	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106293	10915117	232284256	557	26244										
KCNF1	0	genome.wustl.edu	37	chr2	11053867	11053867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaactccagcagcgggggcGagggcaagaccgggggctcc	17	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11053867	11053867	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	missense	c.1315	p.E439K	0.995	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	18	0	0	8	5	38.46	-	-	-	A	11053867	G	A	11053867	3	1	275	1	0	0	0	0	1	0	0	0	8080	1059	37	1	1317	1	KCNF1	2	11053867	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	138750	11053867	232145506	558	26245										
ROCK2	0	genome.wustl.edu	37	chr2	11337705	11337705	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcatctgctgggtcaattTctcacgttcagatttaagct	8	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11337705	11337705	T	G	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.3226	p.K1076Q	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	397	0	0	197	87	30.63	-	-	-	G	11337705	T	G	11337705	3	3	275	1	0	0	0	0	1	0	0	0	13604	1792	62	5	972	5	ROCK2	2	11337705	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	283838	11337705	231861668	559	26246										
ROCK2	0	genome.wustl.edu	37	chr2	11355187	11355187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcagtatcagactctgttCgcagtaaagcattggtttca	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11355187	11355187	C	T	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.1715	p.R572Q	0.999	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	162	0	0	98	33	25.19	-	-	-	T	11355187	C	T	11355187	3	4	275	1	0	0	0	0	1	0	0	0	13604	884	31	1	2523	1	ROCK2	2	11355187	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17482	11355187	231844186	560	26247										
E2F6	0	genome.wustl.edu	37	chr2	11587858	11587858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacttcacacaaatagacatCgataggtccgttggtgctcc	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11587858	11587858	C	T	SNP	E2F6	ENST00000381525	human	ensembl	69_37n	-1	known	missense	c.694	p.D232N	0.965	NULL	pfam_E2F_TDP	-	no_errors	E2F6	HGNC	ENSG00000169016	139	0	0	108	31	22.3	-	-	-	T	11587858	C	T	11587858	3	4	275	1	0	0	0	0	1	0	0	0	4906	884	31	1	159	1	E2F6	2	11587858	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	232671	11587858	231611515	561	26248										
E2F6	0	genome.wustl.edu	37	chr2	11593806	11593806	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgctttcggactcccagtttCgttgcaaccttgtttaagtc	8	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11593806	11593806	C	T	SNP	E2F6	ENST00000381525	human	ensembl	69_37n	-1	known	silent	c.282	p.T94	0.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F6	HGNC	ENSG00000169016	90	0	0	102	23	18.4	-	-	-	T	11593806	C	T	11593806	2	4	275	1	0	0	0	0	0	0	0	1	4906	871	31	1		1	E2F6	2	11593806	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5948	11593806	231605567	562	26249										
NTSR2	0	genome.wustl.edu	37	chr2	11800246	11800246	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccagcagatgacatacatGaccacgatggctcctgcaga	10	12	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	11800246	11800246	G	T	SNP	NTSR2	ENST00000306928	human	ensembl	69_37n	-1	known	silent	c.912	p.V304	0.214	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_NT2_rcpt,prints_NT_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NTSR2	HGNC	ENSG00000169006	76	0	0	57	11	15.94	-	-	-	T	11800246	G	T	11800246	2	4	275	1	0	0	0	0	0	0	0	1	10784	1277	45	2		2	NTSR2	2	11800246	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	206440	11800246	231399127	563	26250										
TRIB2	0	genome.wustl.edu	37	chr2	12880745	12880745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggccaagtgcctcatccGaagcattctgcgtcgggagc	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	12880745	12880745	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	missense	c.857	p.R286Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	136	0	0	90	39	30	-	-	-	A	12880745	G	A	12880745	3	1	275	1	0	0	0	0	1	0	0	0	16579	1058	37	1	867	1	TRIB2	2	12880745	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1080499	12880745	230318628	564	26251										
NBAS	0	genome.wustl.edu	37	chr2	15374764	15374764	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctctagcagctgctgaatCattgctagaggctgaccatc	9	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	15374764	15374764	C	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6051	p.M2017I	0.997	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	104	0	0	79	9	10.23	-	-	-	T	15374764	C	T	15374764	3	4	275	1	0	0	0	0	1	0	0	0	10258	826	29	2	1092	2	NBAS	2	15374764	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2494019	15374764	227824609	565	26252										
NBAS	0	genome.wustl.edu	37	chr2	15417008	15417008	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaaacttcttcagcagtcGaatgtgggtttctggtttaa	9	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	15417008	15417008	G	A	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	nonsense	c.5356	p.R1786*	0.763	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	232	0	0	110	31	21.83	-	-	-	A	15417008	G	A	15417008	4	1	275	1	0	0	0	0	0	1	0	0	10258	1066	37	1	1799	1	NBAS	2	15417008	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42244	15417008	227782365	566	26253										
NBAS	0	genome.wustl.edu	37	chr2	15698717	15698717	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttacctcgaattgctttCgtgatgataaaggatgcacc	8	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	15698717	15698717	C	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	silent	c.159	p.T53	0.979	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	394	0	0	286	32	10.06	-	-	-	T	15698717	C	T	15698717	2	4	275	1	0	0	0	0	0	0	0	1	10258	871	31	1		1	NBAS	2	15698717	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	281709	15698717	227500656	567	26254										
FAM49A	0	genome.wustl.edu	37	chr2	16745329	16745329	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccgcattccaagctttttCttgaagctgaatgtcattgg	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	16745329	16745329	C	A	SNP	FAM49A	ENST00000355549	human	ensembl	69_37n	-1	known	nonsense	c.226	p.E76*	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872	283	0	0	144	48	25	-	-	-	A	16745329	C	A	16745329	4	1	275	1	0	0	0	0	0	1	0	0	5621	922	32	2	777	2	FAM49A	2	16745329	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1046612	16745329	226454044	568	26255										
SMC6	0	genome.wustl.edu	37	chr2	17877631	17877631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgttctttttgtttttcTtcataatgtcgtttccctcg	6	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	17877631	17877631	T	G	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.2535	p.E845D	0.994	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	1374	1	0.07	712	253	26.16	-	-	-	G	17877631	T	G	17877631	3	3	275	1	0	0	0	0	1	0	0	0	14876	1606	56	5	846	5	SMC6	2	17877631	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1132302	17877631	225321742	569	26256										
SMC6	0	genome.wustl.edu	37	chr2	17906559	17906559	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatctgctcctttgttctttCtttcgtttccataatgtatg	5	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	17906559	17906559	C	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	nonsense	c.769	p.E257*	1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	446	0	0	317	55	14.78	-	-	-	A	17906559	C	A	17906559	4	1	275	1	0	0	0	0	0	1	0	0	14876	922	32	2	2664	2	SMC6	2	17906559	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28928	17906559	225292814	570	26257										
OSR1	0	genome.wustl.edu	37	chr2	19552969	19552969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcacaggtgtagggccgctCgtcggtgtgcgtccgctcat	15	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	19552969	19552969	C	T	SNP	OSR1	ENST00000272223	human	ensembl	69_37n	-1	known	missense	c.598	p.E200K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR1	HGNC	ENSG00000143867	222	0	0	109	37	25.34	-	-	-	T	19552969	C	T	19552969	3	4	275	1	0	0	0	0	1	0	0	0	11366	893	31	1	210	1	OSR1	2	19552969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1646410	19552969	223646404	571	26258										
WDR35	0	genome.wustl.edu	37	chr2	20153613	20153613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctttctctcccttcttttCgagaccgtgtgatctgatta	6	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	20153613	20153613	C	T	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	missense	c.1415	p.R472Q	0.999	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	465	0	0	237	79	24.92	-	-	-	T	20153613	C	T	20153613	3	4	275	1	0	0	0	0	1	0	0	0	17386	884	31	1	2194	1	WDR35	2	20153613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	600644	20153613	223045760	572	26259										
WDR35	0	genome.wustl.edu	37	chr2	20173362	20173362	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaactgcacaatgttcacatCtttgtcctgcatggctgcct	7	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	20173362	20173362	C	A	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	missense	c.844	p.D282Y	1.000	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	141	0	0	98	36	26.67	-	-	-	A	20173362	C	A	20173362	3	1	275	1	0	0	0	0	1	0	0	0	17386	913	32	2	2785	2	WDR35	2	20173362	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19749	20173362	223026011	573	26260										
RHOB	0	genome.wustl.edu	37	chr2	20647565	20647565	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcccaatgtgcccatcatCctggtggccaacaaaaaaga	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	20647565	20647565	C	A	SNP	RHOB	ENST00000272233	human	ensembl	69_37n	1	known	silent	c.339	p.I113	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOB	HGNC	ENSG00000143878	41	0	0	17	6	26.09	-	-	-	A	20647565	C	A	20647565	2	1	275	1	0	0	0	0	0	0	0	1	13416	845	30	2		2	RHOB	2	20647565	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	474203	20647565	222551808	574	26261										
APOB	0	genome.wustl.edu	37	chr2	21228053	21228053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaactggcactccaagtgGcattatacacgggagagtct	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	21228053	21228053	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.11687	p.A3896V	0.010	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	137	0	0	77	17	18.09	-	-	-	A	21228053	G	A	21228053	3	1	275	1	0	0	0	0	1	0	0	0	787	1203	42	4	2020	4	APOB	2	21228053	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	580488	21228053	221971320	575	26262										
APOB	0	genome.wustl.edu	37	chr2	21229644	21229644	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgaagatgaagaaaggaGatgagcaacaatatctgact	11	4	1	8			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	21229644	21229644	G	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.10096	p.L3366I	0.379	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	53	0	0	23	13	36.11	-	-	-	T	21229644	G	T	21229644	3	4	275	1	0	0	0	0	1	0	0	0	787	942	33	2	3611	2	APOB	2	21229644	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1591	21229644	221969729	576	26263										
APOB	0	genome.wustl.edu	37	chr2	21230820	21230820	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagccagattcataaaccaAgttttggtttactcttaggt	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	21230820	21230820	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.8920	p.L2974V	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	241	0	0	169	30	15.08	-	-	-	C	21230820	A	C	21230820	3	2	275	1	0	0	0	0	1	0	0	0	787	69	3	5	4787	5	APOB	2	21230820	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1176	21230820	221968553	577	26264										
APOB	0	genome.wustl.edu	37	chr2	21237331	21237331	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttttacctttttaagaaGaggttttctgggatgtggaa	10	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	21237331	21237331	G	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.3831	p.L1277	0.999	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	419	0	0	282	100	26.18	-	-	-	T	21237331	G	T	21237331	2	4	275	1	0	0	0	0	0	0	0	1	787	929	33	2		2	APOB	2	21237331	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6511	21237331	221962042	578	26265										
ATAD2B	0	genome.wustl.edu	37	chr2	23980332	23980332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taacctccacatcagagccaGgttctaacttctcattattg	5	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	23980332	23980332	G	T	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.4034	p.P1345H	0.548	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	248	0	0	157	29	15.59	-	-	-	T	23980332	G	T	23980332	3	4	275	1	0	0	0	0	1	0	0	0	1076	1000	35	4	358	4	ATAD2B	2	23980332	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2743001	23980332	219219041	579	26266										
ATAD2B	0	genome.wustl.edu	37	chr2	24086361	24086361	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgtctccttggctgcattCattagctaatgctctggcaa	8	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	24086361	24086361	C	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	nonsense	c.1369	p.E457*	1.000	pfam_ATPase_AAA_core,pfam_IstB_ATP-bd,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	156	0	0	96	25	20.66	-	-	-	A	24086361	C	A	24086361	4	1	275	1	0	0	0	0	0	1	0	0	1076	835	29	2	3075	2	ATAD2B	2	24086361	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	106029	24086361	219113012	580	26267										
SF3B14	0	genome.wustl.edu	37	chr2	24297061	24297061	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttacttcaggtggaagtcGaatctaaaatgagaaatacg	9	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	24297061	24297061	G	A	SNP	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	nonsense	c.34	p.R12*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	201	0	0	172	26	13.13	-	-	-	A	24297061	G	A	24297061	4	1	275	1	0	0	0	0	0	1	0	0	14238	1066	37	1	355	1	SF3B14	2	24297061	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	210700	24297061	218902312	581	26268										
DTNB	0	genome.wustl.edu	37	chr2	25875532	25875532	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccactttcctcaatcatccTagagacaaagaaagatacaa	4	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	25875532	25875532	T	C	SNP	DTNB	ENST00000406818	human	ensembl	69_37n	-1	known	splice_site	c.1-2	e1-2	1.000	-	-	-	no_errors	DTNB	HGNC	ENSG00000138101	327	1	0.3	328	64	16.28	-	-	-	C	25875532	T	C	25875532	5	2	275	1	0	0	0	0	0	0	1	0	4824	1536	53	5		5	DTNB	2	25875532	Splice_Site	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1578471	25875532	217323841	582	26269										
ASXL2	0	genome.wustl.edu	37	chr2	25976476	25976476	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccttctcaatctcttgtcGaattctcacctgcatctcag	4	15	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	25976476	25976476	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	nonsense	c.1069	p.R357*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	346	1	0.29	215	69	24.3	-	-	-	A	25976476	G	A	25976476	4	1	275	1	0	0	0	0	0	1	0	0	1071	1066	37	1	3250	1	ASXL2	2	25976476	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	100944	25976476	217222897	583	26270										
ASXL2	0	genome.wustl.edu	37	chr2	25982356	25982356	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttcaatgacgcacctgtcGatctacctctgggagtagta	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	25982356	25982356	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	nonsense	c.934	p.R312*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	237	0	0	146	58	28.43	-	-	-	A	25982356	G	A	25982356	4	1	275	1	0	0	0	0	0	1	0	0	1071	1066	37	1	3393	1	ASXL2	2	25982356	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5880	25982356	217217017	584	26271										
RAB10	0	genome.wustl.edu	37	chr2	26332657	26332657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatacagcaggccaggagcGatttcacaccatcacaacct	9	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	26332657	26332657	G	A	SNP	RAB10	ENST00000264710	human	ensembl	69_37n	1	known	missense	c.209	p.R70Q	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB10	HGNC	ENSG00000084733	122	0	0	85	27	23.89	-	-	-	A	26332657	G	A	26332657	3	1	275	1	0	0	0	0	1	0	0	0	12973	1058	37	1	219	1	RAB10	2	26332657	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	350301	26332657	216866716	585	26272										
HADHB	0	genome.wustl.edu	37	chr2	26501559	26501559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatgtccgatgtccctattCgtcactcaaggaaaatgaga	9	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	26501559	26501559	C	T	SNP	HADHB	ENST00000317799	human	ensembl	69_37n	1	known	missense	c.520	p.R174C	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,tigrfam_Thiolase	-	no_errors	HADHB	HGNC	ENSG00000138029	338	0	0	237	49	17.07	-	-	-	T	26501559	C	T	26501559	3	4	275	1	0	0	0	0	1	0	0	0	6995	884	31	1	546	1	HADHB	2	26501559	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	168902	26501559	216697814	586	26273										
EPT1	0	genome.wustl.edu	37	chr2	26587769	26587769	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctggtcgtattcaattttCtgctaatggcatactttgat	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	26587769	26587769	C	A	SNP	EPT1	ENST00000442141	human	ensembl	69_37n	1	known	missense	c.100	p.L34M	0.973	pfam_CDP-OH_P_trans	pfam_CDP-OH_P_trans	-	no_stop_codon	EPT1	HGNC	ENSG00000138018	348	0	0	218	42	16.15	-	-	-	A	26587769	C	A	26587769	3	1	275	1	0	0	0	0	1	0	0	0	5236	912	32	2	206	2	EPT1	2	26587769	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86210	26587769	216611604	587	26274										
DPYSL5	0	genome.wustl.edu	37	chr2	27169819	27169819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccaaagcgagcttcagctCggatcctcgctcctcccgga	9	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27169819	27169819	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	missense	c.1651	p.R551W	0.999	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	87	0	0	79	15	15.79	-	-	-	T	27169819	C	T	27169819	3	4	275	1	0	0	0	0	1	0	0	0	4785	875	31	1	1697	1	DPYSL5	2	27169819	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	582050	27169819	216029554	588	26275										
AGBL5	0	genome.wustl.edu	37	chr2	27277556	27277556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctattctctggatggacttCgtgtagatctgctgacgatc	11	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27277556	27277556	C	T	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	missense	c.610	p.R204C	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	158	0	0	126	17	11.89	-	-	-	T	27277556	C	T	27277556	3	4	275	1	0	0	0	0	1	0	0	0	378	884	31	1	624	1	AGBL5	2	27277556	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	107737	27277556	215921817	589	26276										
AGBL5	0	genome.wustl.edu	37	chr2	27277999	27277999	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actccatctagctttgtcttCaatggctttctggacttcat	6	11	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27277999	27277999	C	A	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	missense	c.786	p.F262L	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	138	0	0	98	22	18.18	-	-	-	A	27277999	C	A	27277999	3	1	275	1	0	0	0	0	1	0	0	0	378	825	29	2	804	2	AGBL5	2	27277999	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	443	27277999	215921374	590	26277										
PREB	0	genome.wustl.edu	37	chr2	27356140	27356140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcccctcgtgctgggtttCcgctccacatttcttctctg	8	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27356140	27356140	C	T	SNP	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	missense	c.391	p.E131K	0.166	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	175	0	0	77	25	24.51	-	-	-	T	27356140	C	T	27356140	3	4	275	1	0	0	0	0	1	0	0	0	12551	864	30	2	890	2	PREB	2	27356140	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	78141	27356140	215843233	591	26278										
TCF23	0	genome.wustl.edu	37	chr2	27375569	27375569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgcagaagtggccgatgcGatctcgtctctatgctggag	13	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27375569	27375569	G	A	SNP	TCF23	ENST00000296096	human	ensembl	69_37n	1	known	missense	c.479	p.R160Q	0.997	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF23	HGNC	ENSG00000163792	97	0	0	65	18	21.69	-	-	-	A	27375569	G	A	27375569	3	1	275	1	0	0	0	0	1	0	0	0	15787	1058	37	1	489	1	TCF23	2	27375569	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19429	27375569	215823804	592	26279										
SLC5A6	0	genome.wustl.edu	37	chr2	27423438	27423438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaggaaacaggccagtgtCgaggtggtcctgcaaacaca	12	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27423438	27423438	C	T	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	missense	c.1774	p.D592N	0.007	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	181	0	0	122	26	17.45	-	-	-	T	27423438	C	T	27423438	3	4	275	1	0	0	0	0	1	0	0	0	14758	884	31	1	137	1	SLC5A6	2	27423438	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47869	27423438	215775935	593	26280										
GTF3C2	0	genome.wustl.edu	37	chr2	27549514	27549514	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttgttcttgaccgacttCactccaaggatctggtgtgg	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27549514	27549514	C	A	SNP	GTF3C2	ENST00000431028	human	ensembl	69_37n	-1	putative	silent	c.238	p.80	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GTF3C2	HGNC	ENSG00000115207	192	0	0	163	30	15.54	-	-	-	A	27549514	C	A	27549514	2	1	275	1	0	0	0	0	0	0	0	1	6924	841	29	2		2	GTF3C2	2	27549514	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	126076	27549514	215649859	594	26281										
NRBP1	0	genome.wustl.edu	37	chr2	27657999	27657999	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagcccagtgcccccacaGctacctgcactcctgtgacc	7	19	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27657999	27657999	G	A	SNP	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	splice_site	c.567-1	e6-1	1.000	-	-	-	no_errors	NRBP1	HGNC	ENSG00000115216	156	1	0.63	150	63	29.44	-	-	-	A	27657999	G	A	27657999	5	1	275	1	0	0	0	0	0	0	1	0	10715	985	34	4	588	4	NRBP1	2	27657999	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	108485	27657999	215541374	595	26282										
IFT172	0	genome.wustl.edu	37	chr2	27668692	27668692	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagtggtcaaggccatctaGagtcccttcctcgattgcct	10	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27668692	27668692	G	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	silent	c.4834	p.L1612	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	258	0	0	149	24	13.87	-	-	-	A	27668692	G	A	27668692	2	1	275	1	0	0	0	0	0	0	0	1	7611	933	33	2		2	IFT172	2	27668692	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10693	27668692	215530681	596	26283										
IFT172	0	genome.wustl.edu	37	chr2	27699513	27699513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagtcttactcacctataGcaatagtcttaatatcaata	5	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27699513	27699513	G	T	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.1406	p.A469D	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	220	0	0	150	18	10.71	-	-	-	T	27699513	G	T	27699513	3	4	275	1	0	0	0	0	1	0	0	0	7611	971	34	4	3983	4	IFT172	2	27699513	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30821	27699513	215499860	597	26284										
C2orf16	0	genome.wustl.edu	37	chr2	27801842	27801842	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccttcataatcaaagctcCgataagacagctaacattgt	6	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27801842	27801842	C	T	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	silent	c.2403	p.S801	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	241	0	0	159	50	23.92	-	-	-	T	27801842	C	T	27801842	2	4	275	1	0	0	0	0	0	0	0	1	2177	639	23	1		1	C2orf16	2	27801842	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102329	27801842	215397531	598	26285										
C2orf16	0	genome.wustl.edu	37	chr2	27803769	27803769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctcaacagccaagaagaGcttactctttccaacccaga	6	14	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27803769	27803769	G	T	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.4330	p.A1444S	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	60	0	0	44	11	20	-	-	-	T	27803769	G	T	27803769	3	4	275	1	0	0	0	0	1	0	0	0	2177	971	34	4	4332	4	C2orf16	2	27803769	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1927	27803769	215395604	599	26286										
C2orf16	0	genome.wustl.edu	37	chr2	27804053	27804053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaaactcacacacaaggaGcataaccaccccagcttcta	5	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27804053	27804053	G	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	silent	c.4614	p.E1538	0.555	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	122	0	0	116	15	11.45	-	-	-	A	27804053	G	A	27804053	2	1	275	1	0	0	0	0	0	0	0	1	2177	962	34	4		4	C2orf16	2	27804053	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	284	27804053	215395320	600	26287										
C2orf16	0	genome.wustl.edu	37	chr2	27804162	27804162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccctctgagagaagccaaCgcagttccttggagagaaga	12	10	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27804162	27804162	C	T	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.4723	p.R1575C	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	83	0	0	77	20	20.62	-	-	-	T	27804162	C	T	27804162	3	4	275	1	0	0	0	0	1	0	0	0	2177	536	19	1	4725	1	C2orf16	2	27804162	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	109	27804162	215395211	601	26288										
CCDC121	0	genome.wustl.edu	37	chr2	27850192	27850192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtagcctcctgtctggctCgctcagttgtttctccagta	9	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	27850192	27850192	C	T	SNP	CCDC121	ENST00000394775	human	ensembl	69_37n	-1	known	missense	c.961	p.E321K	0.031	NULL	NULL	-	no_errors	CCDC121	HGNC	ENSG00000176714	151	0	0	119	20	14.39	-	-	-	T	27850192	C	T	27850192	3	4	275	1	0	0	0	0	1	0	0	0	2782	893	31	1	365	1	CCDC121	2	27850192	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46030	27850192	215349181	602	26289										
BRE	0	genome.wustl.edu	37	chr2	28248273	28248273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatggaaatttatgctgggAaaaaaaacaactgggtaagg	11	4	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	28248273	28248273	A	G	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	missense	c.481	p.K161E	1.000	pfam_Brain/reproduct-express_prot	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	179	1	0.56	150	17	10.12	-	-	-	G	28248273	A	G	28248273	3	3	275	1	0	0	0	0	1	0	0	0	1517	247	9	5	495	5	BRE	2	28248273	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	398081	28248273	214951100	603	26290										
BRE	0	genome.wustl.edu	37	chr2	28561332	28561333	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagggcttatttcaaaaccINStttgtccctcagttccagga							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	28561332	28561333	-	T	INS	BRE	ENST00000342045	human	ensembl	69_37n	1	known	frame_shift_ins	c.1104_1105	p.V369fs	1.000:1.000	NULL	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	210	0	0	153	37	19.47	-	-	-	T	28561333	-	T	28561332	7	5	275	1	0	1	1	0	0	0	0	0	1517	668	24	0	1357	0	BRE	2	28561332	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	313059	28561332	214638041	604	26291										
FAM179A	0	genome.wustl.edu	37	chr2	29226363	29226363	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcctctgctcccaggcgcaGatctcctggcaatacctgca	9	17	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	29226363	29226363	G	T	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.645	p.Q215H	0.974	NULL	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	88	0	0	46	17	26.98	-	-	-	T	29226363	G	T	29226363	3	4	275	1	0	0	0	0	1	0	0	0	5545	933	33	2	663	2	FAM179A	2	29226363	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	665031	29226363	213973010	605	26292										
C2orf71	0	genome.wustl.edu	37	chr2	29293604	29293604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagagctgctctccgctgcGagtctgctctcagccaaggc	11	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	29293604	29293604	G	A	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.3524	p.S1175L	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	51	0	0	31	14	31.11	-	-	-	A	29293604	G	A	29293604	3	1	275	1	0	0	0	0	1	0	0	0	2211	1059	37	1	350	1	C2orf71	2	29293604	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	67241	29293604	213905769	606	26293										
C2orf71	0	genome.wustl.edu	37	chr2	29294777	29294777	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctctgcctgatgctggaGaaatttggggcttcggatac	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	29294777	29294777	G	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.2351	p.S784Y	0.338	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	43	0	0	25	6	19.35	-	-	-	T	29294777	G	T	29294777	3	4	275	1	0	0	0	0	1	0	0	0	2211	942	33	2	1523	2	C2orf71	2	29294777	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1173	29294777	213904596	607	26294										
ALK	0	genome.wustl.edu	37	chr2	29430129	29430129	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacagcctccctttctataGtagctcgccctgtggggaag	11	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	29430129	29430129	G	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	silent	c.3846	p.Y1282	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	73	0	0	91	18	16.36	-	-	-	A	29430129	G	A	29430129	2	1	275	1	0	0	0	0	0	0	0	1	525	1024	36	4		4	ALK	2	29430129	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135352	29430129	213769244	608	26295										
EHD3	0	genome.wustl.edu	37	chr2	31457565	31457565	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggtgagtgaggggctcaaGaaactctacaagagcaagct	13	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	31457565	31457565	G	T	SNP	EHD3	ENST00000322054	human	ensembl	69_37n	1	known	missense	c.78	p.K26N	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	72	0	0	47	16	25.4	-	-	-	T	31457565	G	T	31457565	3	4	275	1	0	0	0	0	1	0	0	0	5014	933	33	2	80	2	EHD3	2	31457565	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2027436	31457565	211741808	609	26296										
XDH	0	genome.wustl.edu	37	chr2	31609390	31609390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacacgctccccttcaaatCgcagctgcttccgaggagtg	9	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	31609390	31609390	C	T	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.683	p.R228Q	0.184	superfamily_FAD-bd_2,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	177	0	0	128	36	21.95	-	-	-	T	31609390	C	T	31609390	3	4	275	1	0	0	0	0	1	0	0	0	17523	884	31	1	3430	1	XDH	2	31609390	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	151825	31609390	211589983	610	26297										
MEMO1	0	genome.wustl.edu	37	chr2	32145882	32145882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttactcttttggtcaatacGaaggtcatacagaggtgtcc	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	32145882	32145882	G	A	SNP	MEMO1	ENST00000379383	human	ensembl	69_37n	-1	known	missense	c.319	p.R107C	1.000	pfam_UPF0103/Memo-related	pfam_UPF0103/Memo-related	-	no_errors	MEMO1	HGNC	ENSG00000162959	242	0	0	202	27	11.79	-	-	-	A	32145882	G	A	32145882	3	1	275	1	0	0	0	0	1	0	0	0	9542	1058	37	1	607	1	MEMO1	2	32145882	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	536492	32145882	211053491	611	26298										
NLRC4	0	genome.wustl.edu	37	chr2	32475709	32475709	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggacacatcctgcagttcGaaatcaaacttgtgggagaa	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	32475709	32475709	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	silent	c.1224	p.F408	0.038	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	56	0	0	28	22	44	-	-	-	A	32475709	G	A	32475709	2	1	275	1	0	0	0	0	0	0	0	1	10541	1049	37	1		1	NLRC4	2	32475709	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	329827	32475709	210723664	612	26299										
BIRC6	0	genome.wustl.edu	37	chr2	32698261	32698261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcagcagtagccttgataGattatattccagaaaaatca	8	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	32698261	32698261	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.6674	p.R2225I	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	147	0	0	156	28	15.22	-	-	-	T	32698261	G	T	32698261	3	4	275	1	0	0	0	0	1	0	0	0	1443	942	33	2	6804	2	BIRC6	2	32698261	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	222552	32698261	210501112	613	26300										
BIRC6	0	genome.wustl.edu	37	chr2	32832625	32832625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtggcacacagagttctcGagaatatgatggaaacattc	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	32832625	32832625	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.14174	p.R4725Q	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	522	1	0.19	422	70	14.23	-	-	-	A	32832625	G	A	32832625	3	1	275	1	0	0	0	0	1	0	0	0	1443	1058	37	1	14460	1	BIRC6	2	32832625	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	134364	32832625	210366748	614	26301										
TTC27	0	genome.wustl.edu	37	chr2	32897449	32897449	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcgctattattcttggaatCtggtgagttaatgactgact	9	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	32897449	32897449	C	T	SNP	TTC27	ENST00000317907	human	ensembl	69_37n	1	known	silent	c.1050	p.I350	0.961	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699	245	0	0	207	40	16.13	-	-	-	T	32897449	C	T	32897449	2	4	275	1	0	0	0	0	0	0	0	1	16792	903	32	2		2	TTC27	2	32897449	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64824	32897449	210301924	615	26302										
LTBP1	0	genome.wustl.edu	37	chr2	33487881	33487881	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actattcatctgcatccacaGtttccaggtagcctgtgttg	8	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	33487881	33487881	G	T	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.2511	p.Q837H	0.998	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	175	0	0	125	14	10.07	-	-	-	T	33487881	G	T	33487881	3	4	275	1	0	0	0	0	1	0	0	0	9139	1020	36	4	2620	4	LTBP1	2	33487881	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	590432	33487881	209711492	616	26303										
RASGRP3	0	genome.wustl.edu	37	chr2	33774812	33774812	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttctgcgaacactgtgcGggatttgtaagtctgttttc	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	33774812	33774812	G	A	SNP	RASGRP3	ENST00000402538	human	ensembl	69_37n	1	known	silent	c.1536	p.A512	0.961	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	603	0	0	523	90	14.63	-	-	-	A	33774812	G	A	33774812	2	1	275	1	0	0	0	0	0	0	0	1	13159	1103	39	1		1	RASGRP3	2	33774812	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	286931	33774812	209424561	617	26304										
FAM98A	0	genome.wustl.edu	37	chr2	33810694	33810694	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccaaaagatgggcaacaGaaatagtagttttaggggat	12	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	33810694	33810694	G	T	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.791	p.S264Y	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	240	0	0	160	24	13.04	-	-	-	T	33810694	G	T	33810694	3	4	275	1	0	0	0	0	1	0	0	0	5702	942	33	2	773	2	FAM98A	2	33810694	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35882	33810694	209388679	618	26305										
C2orf56	0	genome.wustl.edu	37	chr2	37464946	37464946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggatggccactggaaaaaGcacagctttccagctggtgg	13	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	37464946	37464946	G	A	SNP	C2orf56	ENST00000002125	human	ensembl	69_37n	1	known	missense	c.344	p.S115N	0.006	pfam_MidA	pfam_MidA	-	no_errors	C2orf56	HGNC	ENSG00000003509	392	1	0.25	334	74	18.09	-	-	-	A	37464946	G	A	37464946	3	1	275	1	0	0	0	0	1	0	0	0	2197	971	34	4	358	4	C2orf56	2	37464946	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3654252	37464946	205734427	619	26306										
PRKD3	0	genome.wustl.edu	37	chr2	37496797	37496797	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcctgaaccaagcacctCatctgcaaagatctggtaaa	8	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	37496797	37496797	C	A	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	nonsense	c.1738	p.E580*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	303	1	0.33	198	46	18.85	-	-	-	A	37496797	C	A	37496797	4	1	275	1	0	0	0	0	0	1	0	0	12601	835	29	2	962	2	PRKD3	2	37496797	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31851	37496797	205702576	620	26307										
CDC42EP3	0	genome.wustl.edu	37	chr2	37873237	37873237	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgaggtgtctccctggtggActgtcccattctccaacaga	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	37873237	37873237	A	T	SNP	CDC42EP3	ENST00000295324	human	ensembl	69_37n	-1	known	missense	c.494	p.V165D	0.015	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP3	HGNC	ENSG00000163171	181	0	0	94	15	13.76	-	-	-	T	37873237	A	T	37873237	3	4	275	1	0	0	0	0	1	0	0	0	3106	275	10	5	274	5	CDC42EP3	2	37873237	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	376440	37873237	205326136	621	26308										
FAM82A1	0	genome.wustl.edu	37	chr2	38156642	38156642	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcaagaaaggcaacttcaGatactggagaagttaaacga	9	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	38156642	38156642	G	A	SNP	FAM82A1	ENST00000354545	human	ensembl	69_37n	1	known	silent	c.222	p.Q74	0.998	NULL	NULL	-	no_errors	FAM82A1	HGNC	ENSG00000115841	85	0	0	52	9	14.75	-	-	-	A	38156642	G	A	38156642	2	1	275	1	0	0	0	0	0	0	0	1	5675	933	33	2		2	FAM82A1	2	38156642	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	283405	38156642	205042731	622	26309										
FAM82A1	0	genome.wustl.edu	37	chr2	38179047	38179047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcccgatcaacaaaatgGaattgccaatgatattcaac	5	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	38179047	38179047	G	A	SNP	FAM82A1	ENST00000234195	human	ensembl	69_37n	1	known	missense	c.689	p.G230E	0.000	NULL	NULL	-	no_errors	FAM82A1	HGNC	ENSG00000115841	266	0	0	171	50	22.42	-	-	-	A	38179047	G	A	38179047	3	1	275	1	0	0	0	0	1	0	0	0	5675	1174	41	2	1151	2	FAM82A1	2	38179047	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22405	38179047	205020326	623	26310										
GEMIN6	0	genome.wustl.edu	37	chr2	39006139	39006139	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaggtggcaatcatgagtGaatggatgaagaaaggcccc	14	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	39006139	39006139	G	T	SNP	GEMIN6	ENST00000281950	human	ensembl	69_37n	1	known	nonsense	c.7	p.E3*	0.992	pfam_Gemin6	pfam_Gemin6	-	no_errors	GEMIN6	HGNC	ENSG00000152147	156	0	0	153	20	11.56	-	-	-	T	39006139	G	T	39006139	4	4	275	1	0	0	0	0	0	1	0	0	6384	1291	45	2	9	2	GEMIN6	2	39006139	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	827092	39006139	204193234	624	26311										
DHX57	0	genome.wustl.edu	37	chr2	39033743	39033743	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaatgtgtacatatccatcGttcttggtgacaaacttcaa	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	39033743	39033743	G	A	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	silent	c.3774	p.N1258	0.021	pfam_DUF1605	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	497	0	0	441	56	11.24	-	-	-	A	39033743	G	A	39033743	2	1	275	1	0	0	0	0	0	0	0	1	4549	1136	40	1		1	DHX57	2	39033743	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	27604	39033743	204165630	625	26312										
DHX57	0	genome.wustl.edu	37	chr2	39095540	39095540	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccttttcttcttactgaaGaactcattttcacctgcaag	5	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	39095540	39095540	G	T	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.8	p.S3Y	0.999	NULL	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	136	0	0	133	21	13.64	-	-	-	T	39095540	G	T	39095540	3	4	275	1	0	0	0	0	1	0	0	0	4549	942	33	2	4244	2	DHX57	2	39095540	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	61797	39095540	204103833	626	26313										
MAP4K3	0	genome.wustl.edu	37	chr2	39499674	39499674	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacaaccatgtacaccttcGagggaatagctgattaaaaa	7	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	39499674	39499674	G	A	SNP	MAP4K3	ENST00000263881	human	ensembl	69_37n	-1	known	nonsense	c.1804	p.R602*	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566	132	0	0	67	28	29.47	-	-	-	A	39499674	G	A	39499674	4	1	275	1	0	0	0	0	0	1	0	0	9332	1066	37	1	920	1	MAP4K3	2	39499674	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	404134	39499674	203699699	627	26314										
SLC8A1	0	genome.wustl.edu	37	chr2	40404915	40404915	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattcctcttcttatccatTttggttcctcaagcacaagg	5	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	40404915	40404915	T	G	SNP	SLC8A1	ENST00000408028	human	ensembl	69_37n	-1	known	missense	c.1889	p.K630T	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,prints_NaCa_exhngr1,pfscan_DnaJ_N,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	444	0	0	287	34	10.59	-	-	-	G	40404915	T	G	40404915	3	3	275	1	0	0	0	0	1	0	0	0	14795	1841	64	5	1065	5	SLC8A1	2	40404915	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	905241	40404915	202794458	628	26315										
SLC8A1	0	genome.wustl.edu	37	chr2	40657129	40657129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctatagaggacatgaaccGatcagctatgatagagactc	9	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	40657129	40657129	G	A	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.292	p.R98W	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	280	0	0	199	30	13.1	-	-	-	A	40657129	G	A	40657129	3	1	275	1	0	0	0	0	1	0	0	0	14795	1057	37	1	2777	1	SLC8A1	2	40657129	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	252214	40657129	202542244	629	26316										
COX7A2L	0	genome.wustl.edu	37	chr2	42578176	42578176	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacaatggctttaactgtCgaatgagctctgacaagcca	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	42578176	42578176	C	T	SNP	COX7A2L	ENST00000482463	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944	10	0	0	8	4	33.33	-	-	-	T	42578176	C	T	42578176	1	4	275	0	1	0	0	0	0	0	0	0	3811	899	31	1		1	COX7A2L	2	42578176	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1921047	42578176	200621197	630	26317										
THADA	0	genome.wustl.edu	37	chr2	43514201	43514201	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagctatcaattccctgttCtaaaagcacaaaatgtacct	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	43514201	43514201	C	A	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	splice_site	c.5011-1	e34-1	0.987	-	-	-	no_errors	THADA	HGNC	ENSG00000115970	113	0	0	115	17	12.88	-	-	-	A	43514201	C	A	43514201	5	1	275	1	0	0	0	0	0	0	1	0	15935	927	32	2	867	2	THADA	2	43514201	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	936025	43514201	199685172	631	26318										
THADA	0	genome.wustl.edu	37	chr2	43787409	43787409	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttttgataacttcatcagAagatcaaatgctaaaatttt	5	5	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	43787409	43787409	A	C	SNP	THADA	ENST00000407351	human	ensembl	69_37n	-1	novel	missense	c.368	p.F123C	0.997	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THADA	HGNC	ENSG00000115970	229	0	0	130	21	13.91	-	-	-	C	43787409	A	C	43787409	3	2	275	1	0	0	0	0	1	0	0	0	15935	233	9	5	3526	5	THADA	2	43787409	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	273208	43787409	199411964	632	26319										
THADA	0	genome.wustl.edu	37	chr2	43808883	43808883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatttgttacacttaccatCgcttaaaaccttggtaaaaa	4	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	43808883	43808883	C	T	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.718	p.D240N	0.500	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	119	0	0	114	41	26.11	-	-	-	T	43808883	C	T	43808883	3	4	275	1	0	0	0	0	1	0	0	0	15935	884	31	1	5267	1	THADA	2	43808883	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21474	43808883	199390490	633	26320										
DYNC2LI1	0	genome.wustl.edu	37	chr2	44032369	44032369	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgaagtcgatgagatgaGaattcagaaggatctggtat	12	3	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44032369	44032369	G	A	SNP	DYNC2LI1	ENST00000260605	human	ensembl	69_37n	1	known	missense	c.977	p.R326K	1.000	NULL	pfam_Dynein_light_int_chain	-	no_errors	DYNC2LI1	HGNC	ENSG00000138036	325	0	0	152	28	15.56	-	-	-	A	44032369	G	A	44032369	3	1	275	1	0	0	0	0	1	0	0	0	4882	942	33	2	1122	2	DYNC2LI1	2	44032369	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	223486	44032369	199167004	634	26321										
ABCG8	0	genome.wustl.edu	37	chr2	44079980	44079980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcggctacccctgtcctCgctacagcaatcctgctgac	7	18	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44079980	44079980	C	T	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	1	known	missense	c.937	p.R313C	0.009	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	104	0	0	52	13	20	-	-	-	T	44079980	C	T	44079980	3	4	275	1	0	0	0	0	1	0	0	0	72	884	31	1	959	1	ABCG8	2	44079980	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47611	44079980	199119393	635	26322										
LRPPRC	0	genome.wustl.edu	37	chr2	44115743	44115743	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatcgcctggttatttcaaGaagagttttccctcaatttt	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44115743	44115743	G	T	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.4181	p.S1394Y	0.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	381	0	0	225	75	25	-	-	-	T	44115743	G	T	44115743	3	4	275	1	0	0	0	0	1	0	0	0	9031	942	33	2	7	2	LRPPRC	2	44115743	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35763	44115743	199083630	636	26323										
LRPPRC	0	genome.wustl.edu	37	chr2	44203363	44203363	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagttttcataaatccaagaAtcttgctgcaaaggaaaaac	6	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44203363	44203363	A	C	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.656	p.I219S	1.000	pfam_Pentatricopeptide_repeat	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	139	0	0	110	26	19.12	-	-	-	C	44203363	A	C	44203363	3	2	275	1	0	0	0	0	1	0	0	0	9031	101	4	5	3660	5	LRPPRC	2	44203363	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	87620	44203363	198996010	637	26324										
LRPPRC	0	genome.wustl.edu	37	chr2	44209479	44209479	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattagagcccaatcaaactGattggaaatcttcctagaag	7	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44209479	44209479	G	T	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.244	p.Q82K	0.346	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	116	0	0	107	16	13.01	-	-	-	T	44209479	G	T	44209479	3	4	275	1	0	0	0	0	1	0	0	0	9031	1299	45	2	4088	2	LRPPRC	2	44209479	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6116	44209479	198989894	638	26325										
SLC3A1	0	genome.wustl.edu	37	chr2	44547764	44547764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtgtactgaacatactgTatacctcgtgttaggcacct	8	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	44547764	44547764	T	C	SNP	SLC3A1	ENST00000260649	human	ensembl	69_37n	1	known	missense	c.2044	p.Y682H	0.839	NULL	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079	63	0	0	35	15	30	-	-	-	C	44547764	T	C	44547764	3	2	275	1	0	0	0	0	1	0	0	0	14715	1638	57	5	2082	5	SLC3A1	2	44547764	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	338285	44547764	198651609	639	26326										
PRKCE	0	genome.wustl.edu	37	chr2	46372292	46372292	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgcaagctggctgacttCgggatgtgcaaggaagggat	15	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	46372292	46372292	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	silent	c.1653	p.F551	0.942	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	155	0	0	121	35	22.44	-	-	-	T	46372292	C	T	46372292	2	4	275	1	0	0	0	0	0	0	0	1	12592	883	31	1		1	PRKCE	2	46372292	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1824528	46372292	196827081	640	26327										
MSH6	0	genome.wustl.edu	37	chr2	48027886	48027886	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttgaccatgaaaaggctCgaaagactggacttattact	8	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	48027886	48027886	C	T	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	nonsense	c.2764	p.R922*	0.999	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	221	0	0	141	59	29.5	-	-	-	T	48027886	C	T	48027886	4	4	275	1	0	0	0	0	0	1	0	0	9946	876	31	1	2778	1	MSH6	2	48027886	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1655594	48027886	195171487	641	26328										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48873868	48873868	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatatacttgtatctcctgGaaatgagcataaaatcgtgc	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	48873868	48873868	G	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.2777	p.G926V	0.406	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	246	0	0	149	26	14.86	-	-	-	T	48873868	G	T	48873868	3	4	275	1	0	0	0	0	1	0	0	0	15408	1174	41	2	2803	2	STON1-GTF2A1L	2	48873868	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	845982	48873868	194325505	642	26329										
LHCGR	0	genome.wustl.edu	37	chr2	48915276	48915276	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccattaattctgggtttcGaactgcaaaataaattttaa	6	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	48915276	48915276	G	A	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	nonsense	c.1660	p.R554*	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	355	0	0	238	97	28.96	-	-	-	A	48915276	G	A	48915276	4	1	275	1	0	0	0	0	0	1	0	0	8817	1066	37	1	443	1	LHCGR	2	48915276	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41408	48915276	194284097	643	26330										
FSHR	0	genome.wustl.edu	37	chr2	49295388	49295388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtccccaaatcctgaaaatGcacctttttggatgactcga	8	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	49295388	49295388	G	T	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.194	p.A65E	1.000	prints_FSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	652	0	0	339	56	14.18	-	-	-	T	49295388	G	T	49295388	3	4	275	1	0	0	0	0	1	0	0	0	6122	1319	46	4	1929	4	FSHR	2	49295388	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	380112	49295388	193903985	644	26331										
PSME4	0	genome.wustl.edu	37	chr2	54176300	54176300	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaacaagttgatcaaaagGcgggcaaatccctgcatcat	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	54176300	54176300	G	A	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	silent	c.363	p.R121	0.996	NULL	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	188	0	0	113	51	31.1	-	-	-	A	54176300	G	A	54176300	2	1	275	1	0	0	0	0	0	0	0	1	12789	1190	42	4		4	PSME4	2	54176300	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4880912	54176300	189023073	645	26332										
CCDC88A	0	genome.wustl.edu	37	chr2	55523025	55523025	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcgaggaccaggtctcaaAaactcaggcttagttgtccg	10	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	55523025	55523025	A	C	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.5259	p.F1753L	0.999	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	147	0	0	85	17	16.67	-	-	-	C	55523025	A	C	55523025	3	2	275	1	0	0	0	0	1	0	0	0	2890	11	1	5	364	5	CCDC88A	2	55523025	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1346725	55523025	187676348	646	26333										
CCDC88A	0	genome.wustl.edu	37	chr2	55562183	55562183	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctttgatagattcatgaaGaattttgttttctttttcaa	5	4	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	55562183	55562183	G	T	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.1774	p.L592I	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	95	0	0	56	27	32.53	-	-	-	T	55562183	G	T	55562183	3	4	275	1	0	0	0	0	1	0	0	0	2890	942	33	2	3913	2	CCDC88A	2	55562183	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39158	55562183	187637190	647	26334										
CCDC88A	0	genome.wustl.edu	37	chr2	55599608	55599608	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaactgcacaacccaataAaagtaaaagcagttttttaa	5	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	55599608	55599608	A	C	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.382	p.L128V	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	306	0	0	262	33	11.19	-	-	-	C	55599608	A	C	55599608	3	2	275	1	0	0	0	0	1	0	0	0	2890	11	1	5	5345	5	CCDC88A	2	55599608	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	37425	55599608	187599765	648	26335										
CCDC88A	0	genome.wustl.edu	37	chr2	55599632	55599632	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaagcagttttttaacttCttctgtgccttgttctaaaa	5	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	55599632	55599632	C	A	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	nonsense	c.358	p.E120*	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	319	0	0	283	42	12.92	-	-	-	A	55599632	C	A	55599632	4	1	275	1	0	0	0	0	0	1	0	0	2890	922	32	2	5369	2	CCDC88A	2	55599632	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24	55599632	187599741	649	26336										
REL	0	genome.wustl.edu	37	chr2	61128173	61128173	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagaaaaaagaagtaaaaGaagctattattacaagaata	7	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61128173	61128173	G	T	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	nonsense	c.349	p.E117*	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	197	0	0	165	54	24.66	-	-	-	T	61128173	G	T	61128173	4	4	275	1	0	0	0	0	0	1	0	0	13298	943	33	2	363	2	REL	2	61128173	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5528541	61128173	182071200	650	26337										
PUS10	0	genome.wustl.edu	37	chr2	61189967	61189967	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacttctacttacttaaggAaatcctcttcctttatctta	2	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61189967	61189967	A	T	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	missense	c.782	p.F261Y	1.000	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	171	0	0	134	39	22.54	-	-	-	T	61189967	A	T	61189967	3	4	275	1	0	0	0	0	1	0	0	0	12914	246	9	5	847	5	PUS10	2	61189967	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	61794	61189967	182009406	651	26338										
PUS10	0	genome.wustl.edu	37	chr2	61192232	61192232	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaaacaatctgggcatatCgcagctctaaaataaaattc	5	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61192232	61192232	C	T	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	silent	c.684	p.A228	0.001	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	323	0	0	166	61	26.87	-	-	-	T	61192232	C	T	61192232	2	4	275	1	0	0	0	0	0	0	0	1	12914	871	31	1		1	PUS10	2	61192232	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2265	61192232	182007141	652	26339										
PUS10	0	genome.wustl.edu	37	chr2	61235910	61235910	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttacctttttaatgaaatCtttctcacagaattcttgaa	3	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61235910	61235910	C	A	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	missense	c.367	p.D123Y	0.467	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	128	0	0	60	31	34.07	-	-	-	A	61235910	C	A	61235910	3	1	275	1	0	0	0	0	1	0	0	0	12914	913	32	2	1286	2	PUS10	2	61235910	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43678	61235910	181963463	653	26340										
KIAA1841	0	genome.wustl.edu	37	chr2	61315524	61315524	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaagaaacttttaacaaaaGaaacagaaagaagaattcct	6	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61315524	61315524	G	T	SNP	KIAA1841	ENST00000356719	human	ensembl	69_37n	1	known	nonsense	c.1009	p.E337*	1.000	pfam_DUF3342	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	250	0	0	207	30	12.66	-	-	-	T	61315524	G	T	61315524	4	4	275	1	0	0	0	0	0	1	0	0	8313	943	33	2	1039	2	KIAA1841	2	61315524	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	79614	61315524	181883849	654	26341										
USP34	0	genome.wustl.edu	37	chr2	61577399	61577399	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatgacattactaacctttCttatttccaatgggaatatt	4	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61577399	61577399	C	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.1503	p.K501N	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	114	0	0	85	36	29.75	-	-	-	A	61577399	C	A	61577399	3	1	275	1	0	0	0	0	1	0	0	0	17162	912	32	2	9413	2	USP34	2	61577399	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	261875	61577399	181621974	655	26342										
XPO1	0	genome.wustl.edu	37	chr2	61711215	61711215	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagtaagaaaaagttcgttCtatgttcaggatattcttca	8	5	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61711215	61711215	C	A	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.2534	p.R845I	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	177	0	0	160	18	10.11	-	-	-	A	61711215	C	A	61711215	3	1	275	1	0	0	0	0	1	0	0	0	17542	913	32	2	701	2	XPO1	2	61711215	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	133816	61711215	181488158	656	26343										
XPO1	0	genome.wustl.edu	37	chr2	61715367	61715367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttccctttttacagttCgcatacttctaatcaatggt	5	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61715367	61715367	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.2246	p.R749Q	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	238	0	0	164	62	27.43	-	-	-	T	61715367	C	T	61715367	3	4	275	1	0	0	0	0	1	0	0	0	17542	884	31	1	997	1	XPO1	2	61715367	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4152	61715367	181484006	657	26344										
XPO1	0	genome.wustl.edu	37	chr2	61719731	61719731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaacaagaaatcgtttttCgtcctcttcatgcattgctc	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	61719731	61719731	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1537	p.E513K	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	99	0	0	113	19	14.39	-	-	-	T	61719731	C	T	61719731	3	4	275	1	0	0	0	0	1	0	0	0	17542	893	31	1	1726	1	XPO1	2	61719731	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4364	61719731	181479642	658	26345										
FAM161A	0	genome.wustl.edu	37	chr2	62053705	62053705	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattttcttccccattctctCtttcttctattttttcttct	0	12	7	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	62053705	62053705	C	A	SNP	FAM161A	ENST00000405894	human	ensembl	69_37n	-1	known	missense	c.1868	p.R623I	0.988	NULL	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264	167	0	0	148	36	19.57	-	-	-	A	62053705	C	A	62053705	3	1	275	1	0	0	0	0	1	0	0	0	5512	913	32	2	118	2	FAM161A	2	62053705	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	333974	62053705	181145668	659	26346										
FAM161A	0	genome.wustl.edu	37	chr2	62066710	62066710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaattttcttcatctgcttCgatgtctgccaaaatttttt	4	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	62066710	62066710	C	T	SNP	FAM161A	ENST00000405894	human	ensembl	69_37n	-1	known	missense	c.1429	p.E477K	0.010	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264	303	0	0	233	31	11.74	-	-	-	T	62066710	C	T	62066710	3	4	275	1	0	0	0	0	1	0	0	0	5512	893	31	1	569	1	FAM161A	2	62066710	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13005	62066710	181132663	660	26347										
FAM161A	0	genome.wustl.edu	37	chr2	62067352	62067352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcgctttatgtaccatttCgatatctgatttagatttca	7	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	62067352	62067352	C	T	SNP	FAM161A	ENST00000405894	human	ensembl	69_37n	-1	known	missense	c.787	p.E263K	0.915	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264	455	1	0.22	328	93	22.09	-	-	-	T	62067352	C	T	62067352	3	4	275	1	0	0	0	0	1	0	0	0	5512	893	31	1	1211	1	FAM161A	2	62067352	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	642	62067352	181132021	661	26348										
CCT4	0	genome.wustl.edu	37	chr2	62100346	62100346	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaccttacaaatgaattCaatgtcttctctttcaatat	2	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	62100346	62100346	C	A	SNP	CCT4	ENST00000394440	human	ensembl	69_37n	-1	known	nonsense	c.1000	p.E334*	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484	158	0	0	94	17	15.32	-	-	-	A	62100346	C	A	62100346	4	1	275	1	0	0	0	0	0	1	0	0	2984	835	29	2	643	2	CCT4	2	62100346	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32994	62100346	181099027	662	26349										
EHBP1	0	genome.wustl.edu	37	chr2	63169954	63169954	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaactaccgaggagtaaaAatcaccaattttactacatc	5	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	63169954	63169954	A	C	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.1392	p.K464N	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	249	0	0	170	21	10.99	-	-	-	C	63169954	A	C	63169954	3	2	275	1	0	0	0	0	1	0	0	0	5010	11	1	5	1434	5	EHBP1	2	63169954	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1069608	63169954	180029419	663	26350										
VPS54	0	genome.wustl.edu	37	chr2	64176266	64176266	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcattttatctatcagttTttctaattcacaaagctgtg	4	8	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	64176266	64176266	T	G	SNP	VPS54	ENST00000272322	human	ensembl	69_37n	-1	known	missense	c.1042	p.K348Q	1.000	pfam_Vacuolar_sorting-assoc_54	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952	227	0	0	169	50	22.83	-	-	-	G	64176266	T	G	64176266	3	3	275	1	0	0	0	0	1	0	0	0	17313	1850	64	5	1955	5	VPS54	2	64176266	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1006312	64176266	179023107	664	26351										
ACTR2	0	genome.wustl.edu	37	chr2	65482821	65482821	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccacagtattagttgaatCttatacagtaagtgtttcca	6	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	65482821	65482821	C	A	SNP	ACTR2	ENST00000377982	human	ensembl	69_37n	1	known	missense	c.743	p.S248Y	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR2	HGNC	ENSG00000138071	263	0	0	200	51	20.32	-	-	-	A	65482821	C	A	65482821	3	1	275	1	0	0	0	0	1	0	0	0	211	913	32	2	769	2	ACTR2	2	65482821	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1306555	65482821	177716552	665	26352										
ACTR2	0	genome.wustl.edu	37	chr2	65495864	65495864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaacttggtgtgactgttcGataaactccaaagcttgttc	9	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	65495864	65495864	G	A	SNP	ACTR2	ENST00000377982	human	ensembl	69_37n	1	known	missense	c.1196	p.R399Q	1.000	NULL	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR2	HGNC	ENSG00000138071	375	1	0.27	265	43	13.96	-	-	-	A	65495864	G	A	65495864	3	1	275	1	0	0	0	0	1	0	0	0	211	1058	37	1	1234	1	ACTR2	2	65495864	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13043	65495864	177703509	666	26353										
MEIS1	0	genome.wustl.edu	37	chr2	66665076	66665076	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaatgacgctttaaagagaGataaagatgccatttatggg	10	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	66665076	66665076	G	T	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	missense	c.220	p.D74Y	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	116	0	0	77	14	15.38	-	-	-	T	66665076	G	T	66665076	3	4	275	1	0	0	0	0	1	0	0	0	9538	942	33	2	226	2	MEIS1	2	66665076	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1169212	66665076	176534297	667	26354										
APLF	0	genome.wustl.edu	37	chr2	68753199	68753199	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatgtgtttaaggtaatgTaatccagggaagtggaaaag	12	2	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	68753199	68753199	T	C	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	missense	c.629	p.V210A	0.121	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	51	0	0	32	6	15.79	-	-	-	C	68753199	T	C	68753199	3	2	275	1	0	0	0	0	1	0	0	0	777	1638	57	5	651	5	APLF	2	68753199	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2088123	68753199	174446174	668	26355										
AAK1	0	genome.wustl.edu	37	chr2	69723169	69723169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcagacacgcttagaagCgggaggccagagtccacagt	14	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	69723169	69723169	C	T	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.2313	p.P771	0.681	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	723	2	0.28	543	79	12.68	-	-	-	T	69723169	C	T	69723169	2	4	275	1	0	0	0	0	0	0	0	1	16	755	27	1		1	AAK1	2	69723169	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	969970	69723169	173476204	669	26356										
AAK1	0	genome.wustl.edu	37	chr2	69757169	69757169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgcatgtcttgagaatatCgagaattatcaggaattgtg	11	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	69757169	69757169	C	T	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.842	p.R281Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	240	0	0	158	80	33.61	-	-	-	T	69757169	C	T	69757169	3	4	275	1	0	0	0	0	1	0	0	0	16	884	31	1	2103	1	AAK1	2	69757169	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34000	69757169	173442204	670	26357										
ANXA4	0	genome.wustl.edu	37	chr2	70033529	70033529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgcaggacttgatagacGacctgaagtcagaactgagt	11	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	70033529	70033529	G	A	SNP	ANXA4	ENST00000394295	human	ensembl	69_37n	1	known	missense	c.205	p.D69N	0.989	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975	281	0	0	241	41	14.54	-	-	-	A	70033529	G	A	70033529	3	1	275	1	0	0	0	0	1	0	0	0	719	1058	37	1	219	1	ANXA4	2	70033529	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	276360	70033529	173165844	671	26358										
ADD2	0	genome.wustl.edu	37	chr2	70917985	70917985	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgctccatttccccattgAagtcataataggccatgtcc	6	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	70917985	70917985	A	C	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.782	p.F261C	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	130	0	0	61	25	28.74	-	-	-	C	70917985	A	C	70917985	3	2	275	1	0	0	0	0	1	0	0	0	305	246	9	5	1611	5	ADD2	2	70917985	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	884456	70917985	172281388	672	26359										
ADD2	0	genome.wustl.edu	37	chr2	70918057	70918057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggccccacttcatggccGacaccttagagagacaatgg	12	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	70918057	70918057	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.710	p.S237L	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	95	0	0	58	13	18.31	-	-	-	A	70918057	G	A	70918057	3	1	275	1	0	0	0	0	1	0	0	0	305	1059	37	1	1683	1	ADD2	2	70918057	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72	70918057	172281316	673	26360										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71192113	71192113	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgagaaccgctcggtgttCgagtcgctggacctgggctg	15	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71192113	71192113	C	T	SNP	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	silent	c.1404	p.F468	0.986	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	35	0	0	20	9	31.03	-	-	-	T	71192113	C	T	71192113	2	4	275	1	0	0	0	0	0	0	0	1	1182	883	31	1		1	ATP6V1B1	2	71192113	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	274056	71192113	172007260	674	26361										
ANKRD53	0	genome.wustl.edu	37	chr2	71211329	71211329	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcctatggcaggacatttCtctactatcagactgtggat	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71211329	71211329	C	T	SNP	ANKRD53	ENST00000272421	human	ensembl	69_37n	1	known	missense	c.980	p.S327F	0.078	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD53	HGNC	ENSG00000144031	144	1	0.69	91	11	10.78	-	-	-	T	71211329	C	T	71211329	3	4	275	1	0	0	0	0	1	0	0	0	678	913	32	2	1002	2	ANKRD53	2	71211329	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19216	71211329	171988044	675	26362										
MPHOSPH10	0	genome.wustl.edu	37	chr2	71376534	71376534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacagcaaaacagtagcttCggagaagttaaaacagctga	9	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71376534	71376534	C	T	SNP	MPHOSPH10	ENST00000244230	human	ensembl	69_37n	1	known	missense	c.1847	p.S616L	0.014	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383	232	0	0	173	21	10.82	-	-	-	T	71376534	C	T	71376534	3	4	275	1	0	0	0	0	1	0	0	0	9797	893	31	1	1885	1	MPHOSPH10	2	71376534	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165205	71376534	171822839	676	26363										
ZNF638	0	genome.wustl.edu	37	chr2	71635258	71635258	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcttctccaaaggcaattCttcagttagatagtcctgaa	6	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71635258	71635258	C	A	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.3142	p.L1048I	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	321	0	0	200	25	11.06	-	-	-	A	71635258	C	A	71635258	3	1	275	1	0	0	0	0	1	0	0	0	18151	913	32	2	3216	2	ZNF638	2	71635258	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	258724	71635258	171564115	677	26364										
DYSF	0	genome.wustl.edu	37	chr2	71788904	71788904	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctctgggtgacatccatGagacaccctctgccacccac	8	17	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71788904	71788904	G	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	nonsense	c.2278	p.E760*	0.005	pfam_Ferlin_A-domain	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	154	0	0	68	32	32	-	-	-	T	71788904	G	T	71788904	4	4	275	1	0	0	0	0	0	1	0	0	4894	1291	45	2	2467	2	DYSF	2	71788904	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	153646	71788904	171410469	678	26365										
DYSF	0	genome.wustl.edu	37	chr2	71838387	71838387	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgcagtctgaggacacaGacctgccctacccaccaccc	7	19	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71838387	71838387	G	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.4009	p.D1337Y	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	88	0	0	84	28	24.78	-	-	-	T	71838387	G	T	71838387	3	4	275	1	0	0	0	0	1	0	0	0	4894	942	33	2	4254	2	DYSF	2	71838387	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49483	71838387	171360986	679	26366										
DYSF	0	genome.wustl.edu	37	chr2	71847720	71847720	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcccccactaacacggcttCtcctccatccagtcctcatg	6	19	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71847720	71847720	C	A	SNP	DYSF	ENST00000429174	human	ensembl	69_37n	1	known	missense	c.4454	p.S1485Y	0.978	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	164	0	0	110	16	12.5	-	-	-	A	71847720	C	A	71847720	3	1	275	1	0	0	0	0	1	0	0	0	4894	913	32	2	4808	2	DYSF	2	71847720	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9333	71847720	171351653	680	26367										
DYSF	0	genome.wustl.edu	37	chr2	71894639	71894639	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccccctgcagccagacatCgagcaggtaggaccttgacc	11	15	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	71894639	71894639	C	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.5427	p.I1809	0.002	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	100	0	0	100	14	12.28	-	-	-	T	71894639	C	T	71894639	2	4	275	1	0	0	0	0	0	0	0	1	4894	874	31	1		1	DYSF	2	71894639	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46919	71894639	171304734	681	26368										
ALMS1	0	genome.wustl.edu	37	chr2	73651926	73651926	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatttgacataactgatgAaaacatagctactaaaagaa	5	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	73651926	73651926	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1133	p.E378A	0.972	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	181	0	0	108	20	15.5	-	-	-	C	73651926	A	C	73651926	3	2	275	1	0	0	0	0	1	0	0	0	535	246	9	5	1151	5	ALMS1	2	73651926	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1757287	73651926	169547447	682	26369										
ALMS1	0	genome.wustl.edu	37	chr2	73675581	73675581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taccagagagtaacttaaccGaagagcctttggaagtttca	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	73675581	73675581	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1924	p.E642K	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	139	0	0	78	24	23.53	-	-	-	A	73675581	G	A	73675581	3	1	275	1	0	0	0	0	1	0	0	0	535	1059	37	1	1954	1	ALMS1	2	73675581	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23655	73675581	169523792	683	26370										
ALMS1	0	genome.wustl.edu	37	chr2	73676816	73676816	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttcttacccacagagggaGaagcctagtgttttgtaccc	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	73676816	73676816	G	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.3159	p.E1053D	0.003	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	170	0	0	123	29	19.08	-	-	-	T	73676816	G	T	73676816	3	4	275	1	0	0	0	0	1	0	0	0	535	933	33	2	3189	2	ALMS1	2	73676816	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1235	73676816	169522557	684	26371										
ALMS1	0	genome.wustl.edu	37	chr2	73677668	73677668	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttctactcacacacagaGaagcctggtgttttctacca	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	73677668	73677668	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	silent	c.4011	p.E1337	0.004	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	104	0	0	77	23	23	-	-	-	A	73677668	G	A	73677668	2	1	275	1	0	0	0	0	0	0	0	1	535	933	33	2		2	ALMS1	2	73677668	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	852	73677668	169521705	685	26372										
NAT8	0	genome.wustl.edu	37	chr2	73868172	73868172	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagaaggactggcccgtcTtcttgaagcccatgctctgg	12	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	73868172	73868172	T	G	SNP	NAT8	ENST00000272425	human	ensembl	69_37n	-1	known	missense	c.584	p.K195T	0.000	pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035	149	0	0	144	20	12.2	-	-	-	G	73868172	T	G	73868172	3	3	275	1	0	0	0	0	1	0	0	0	10251	1609	56	5	103	5	NAT8	2	73868172	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	190504	73868172	169331201	686	26373										
DUSP11	0	genome.wustl.edu	37	chr2	74000985	74000985	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttgaatttaaaaatagtCtcatcatcaggcacttgatg	7	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74000985	74000985	C	T	SNP	DUSP11	ENST00000272444	human	ensembl	69_37n	-1	known	silent	c.516	p.E172	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	DUSP11	HGNC	ENSG00000144048	167	0	0	98	22	18.33	-	-	-	T	74000985	C	T	74000985	2	4	275	1	0	0	0	0	0	0	0	1	4846	912	32	2		2	DUSP11	2	74000985	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	132813	74000985	169198388	687	26374										
C2orf78	0	genome.wustl.edu	37	chr2	74043300	74043300	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcgatatgaaaactggattCtcttcctccaggaccctggg	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74043300	74043300	C	A	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.1950	p.F650L	0.587	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	64	0	0	40	21	34.43	-	-	-	A	74043300	C	A	74043300	3	1	275	1	0	0	0	0	1	0	0	0	2215	912	32	2	1960	2	C2orf78	2	74043300	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42315	74043300	169156073	688	26375										
ACTG2	0	genome.wustl.edu	37	chr2	74136181	74136181	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattcttcattgtcctttaaGatcatgtttgaaaccttcaa	4	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74136181	74136181	G	T	SNP	ACTG2	ENST00000345517	human	ensembl	69_37n	1	known	splice_site	c.367-1	e4-1	1.000	-	-	-	no_errors	ACTG2	HGNC	ENSG00000163017	257	1	0.39	194	24	11.01	-	-	-	T	74136181	G	T	74136181	5	4	275	1	0	0	0	0	0	0	1	0	197	956	33	2	380	2	ACTG2	2	74136181	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	92881	74136181	169063192	689	26376										
SLC4A5	0	genome.wustl.edu	37	chr2	74482967	74482967	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggatgaggcgcacgaacgcGatgaatggctggtctaggaa	16	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74482967	74482967	G	A	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	silent	c.960	p.I320	0.636	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	301	0	0	163	19	10.38	-	-	-	A	74482967	G	A	74482967	2	1	275	1	0	0	0	0	0	0	0	1	14746	1048	37	1		1	SLC4A5	2	74482967	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	346786	74482967	168716406	690	26377										
DQX1	0	genome.wustl.edu	37	chr2	74749893	74749893	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggcttgcatcagtgcttCtggagctggtgaggaaacag	15	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74749893	74749893	C	A	SNP	DQX1	ENST00000393951	human	ensembl	69_37n	-1	known	nonsense	c.1309	p.E437*	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	154	0	0	153	34	18.18	-	-	-	A	74749893	C	A	74749893	4	1	275	1	0	0	0	0	0	1	0	0	4786	922	32	2	864	2	DQX1	2	74749893	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	266926	74749893	168449480	691	26378										
SEMA4F	0	genome.wustl.edu	37	chr2	74885070	74885070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgcttttgatccgaagtgcGgggttattgtgagtgacggt	15	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74885070	74885070	G	A	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.448	p.G150R	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	213	0	0	192	31	13.84	-	-	-	A	74885070	G	A	74885070	3	1	275	1	0	0	0	0	1	0	0	0	14123	1116	39	1	462	1	SEMA4F	2	74885070	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135177	74885070	168314303	692	26379										
SEMA4F	0	genome.wustl.edu	37	chr2	74900842	74900842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgtggccttgagcccagccGaatggggggatgaagatgga	17	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	74900842	74900842	G	A	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	0.304	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	132	0	0	81	19	19	-	-	-	A	74900842	G	A	74900842	3	1	275	1	0	0	0	0	1	0	0	0	14123	1059	37	1	735	1	SEMA4F	2	74900842	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15772	74900842	168298531	693	26380										
HK2	0	genome.wustl.edu	37	chr2	75107615	75107615	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgaaggtagaaatggagCgaggtctgagcaaggagact	17	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	75107615	75107615	C	A	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	silent	c.1489	p.R497	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	163	0	0	89	37	29.37	-	-	-	A	75107615	C	A	75107615	2	1	275	1	0	0	0	0	0	0	0	1	7242	760	27	3		3	HK2	2	75107615	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	206773	75107615	168091758	694	26381										
TACR1	0	genome.wustl.edu	37	chr2	75425986	75425986	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttgccaggctggttgcacGaactgattgggttccgaggt	14	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	75425986	75425986	G	A	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	silent	c.75	p.F25	0.987	prints_NK1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	322	0	0	170	27	13.71	-	-	-	A	75425986	G	A	75425986	2	1	275	1	0	0	0	0	0	0	0	1	15597	1049	37	1		1	TACR1	2	75425986	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	318371	75425986	167773387	695	26382										
FAM176A	0	genome.wustl.edu	37	chr2	75720614	75720614	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctgtcctgcaggaacttCttcccgggacgccgcctgca	10	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	75720614	75720614	C	A	SNP	FAM176A	ENST00000233712	human	ensembl	69_37n	-1	known	missense	c.207	p.K69N	1.000	NULL	NULL	-	no_errors	FAM176A	HGNC	ENSG00000115363	132	0	0	60	8	11.76	-	-	-	A	75720614	C	A	75720614	3	1	275	1	0	0	0	0	1	0	0	0	5539	912	32	2	255	2	FAM176A	2	75720614	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	294628	75720614	167478759	696	26383										
USP39	0	genome.wustl.edu	37	chr2	85857983	85857983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaagctctggaaccctcGaaatttcaaggcacatgtgt	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	85857983	85857983	G	A	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.863	p.R288Q	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	142	0	0	172	28	14	-	-	-	A	85857983	G	A	85857983	3	1	275	1	0	0	0	0	1	0	0	0	17167	1058	37	1	885	1	USP39	2	85857983	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10137369	85857983	157341390	697	26384										
GNLY	0	genome.wustl.edu	37	chr2	85925788	85925788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccggctcctcgcttcctcGatccagaatccactctccag	7	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	85925788	85925788	G	A	SNP	GNLY	ENST00000526018	human	ensembl	69_37n	1	putative	missense	c.479	p.R160Q	0.000	NULL	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_start_codon:pseudogene:no_stop_codon	GNLY	HGNC	ENSG00000115523	63	0	0	36	16	30.77	-	-	-	A	85925788	G	A	85925788	3	1	275	1	0	0	0	0	1	0	0	0	6591	1073	37	1		1	GNLY	2	85925788	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	67805	85925788	157273585	698	26385										
POLR1A	0	genome.wustl.edu	37	chr2	86297213	86297213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcccagctcactctggggGaaatgggcattcatctcgtc	12	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	86297213	86297213	G	T	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.1794	p.F598L	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	106	0	0	97	16	14.16	-	-	-	T	86297213	G	T	86297213	3	4	275	1	0	0	0	0	1	0	0	0	12283	1165	41	2	3456	2	POLR1A	2	86297213	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	371425	86297213	156902160	699	26386										
PTCD3	0	genome.wustl.edu	37	chr2	86355071	86355071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggtaatttgagaaccctcGcttgcaacatatcaccatat	6	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	86355071	86355071	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	69_37n	1	known	silent	c.1104	p.S368	0.753	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	400	0	0	274	95	25.75	-	-	-	A	86355071	G	A	86355071	2	1	275	1	0	0	0	0	0	0	0	1	12809	1074	38	1		1	PTCD3	2	86355071	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57858	86355071	156844302	700	26387										
KDM3A	0	genome.wustl.edu	37	chr2	86693560	86693560	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaagtctgaagctctgaGaacaaaaccagatgtctgca	8	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	86693560	86693560	G	T	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.1073	p.R358I	0.996	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	114	0	0	65	8	10.96	-	-	-	T	86693560	G	T	86693560	3	4	275	1	0	0	0	0	1	0	0	0	8180	942	33	2	1107	2	KDM3A	2	86693560	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	338489	86693560	156505813	701	26388										
RNF103	0	genome.wustl.edu	37	chr2	86847539	86847539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggtactagaaaccgattCggatgcttcttcttccttga	8	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	86847539	86847539	C	T	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	missense	c.280	p.E94K	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	156	0	0	65	19	22.62	-	-	-	T	86847539	C	T	86847539	3	4	275	1	0	0	0	0	1	0	0	0	13509	893	31	1	1789	1	RNF103	2	86847539	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	153979	86847539	156351834	702	26389										
C2orf51	0	genome.wustl.edu	37	chr2	88828687	88828687	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccccacatgactgccaaaGacctgggactccccggcttc	9	17	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	88828687	88828687	G	T	SNP	C2orf51	ENST00000303254	human	ensembl	69_37n	1	known	missense	c.238	p.D80Y	0.973	NULL	NULL	-	no_errors	C2orf51	HGNC	ENSG00000172073	235	1	0.42	221	33	12.99	-	-	-	T	88828687	G	T	88828687	3	4	275	1	0	0	0	0	1	0	0	0	2193	942	33	2	248	2	C2orf51	2	88828687	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1981148	88828687	154370686	703	26390										
EIF2AK3	0	genome.wustl.edu	37	chr2	88913339	88913339	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggatccaaggcagcaattCtcccatctaaagtgctgata	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	88913339	88913339	C	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	missense	c.341	p.R114I	0.996	superfamily_Quinonprotein_ADH-like	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	294	0	0	190	60	23.9	-	-	-	A	88913339	C	A	88913339	3	1	275	1	0	0	0	0	1	0	0	0	5033	913	32	2	3073	2	EIF2AK3	2	88913339	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	84652	88913339	154286034	704	26391										
ZNF514	0	genome.wustl.edu	37	chr2	95815139	95815139	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctccagtgtgaaatCtgtaatgttgagtgagagat	11	5	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	95815139	95815139	C	A	SNP	ZNF514	ENST00000295208	human	ensembl	69_37n	-1	known	missense	c.1091	p.R364I	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	131	0	0	96	45	31.91	-	-	-	A	95815139	C	A	95815139	3	1	275	1	0	0	0	0	1	0	0	0	18055	913	32	2	115	2	ZNF514	2	95815139	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6901800	95815139	147384234	705	26392										
ZNF514	0	genome.wustl.edu	37	chr2	95815987	95815987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccaacttggcattgattcCttggatttagaccttctctt	6	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	95815987	95815987	C	A	SNP	ZNF514	ENST00000295208	human	ensembl	69_37n	-1	known	missense	c.243	p.K81N	0.009	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	60	0	0	46	13	22.03	-	-	-	A	95815987	C	A	95815987	3	1	275	1	0	0	0	0	1	0	0	0	18055	680	24	4	963	4	ZNF514	2	95815987	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	848	95815987	147383386	706	26393										
GPAT2	0	genome.wustl.edu	37	chr2	96691752	96691752	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagcttctggcactgacGatgtattcctgcccaagaga	10	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	96691752	96691752	G	A	SNP	GPAT2	ENST00000359548	human	ensembl	69_37n	-1	known	silent	c.1164	p.I388	0.002	NULL	smart_Acyltransferase	-	no_errors	GPAT2	HGNC	ENSG00000186281	18	0	0	16	6	27.27	-	-	-	A	96691752	G	A	96691752	2	1	275	1	0	0	0	0	0	0	0	1	6639	1048	37	1		1	GPAT2	2	96691752	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	875765	96691752	146507621	707	26394										
ASTL	0	genome.wustl.edu	37	chr2	96798457	96798457	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcgccccacactcgagaaGcacctgcagggtgatgagag	13	13	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	96798457	96798457	G	T	SNP	ASTL	ENST00000342380	human	ensembl	69_37n	-1	known	nonsense	c.459	p.C153*	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886	33	0	0	19	5	20.83	-	-	-	T	96798457	G	T	96798457	4	4	275	1	0	0	0	0	0	1	0	0	1067	963	34	4	851	4	ASTL	2	96798457	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106705	96798457	146400916	708	26395										
SNRNP200	0	genome.wustl.edu	37	chr2	96964556	96964556	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcatcttggccataccttCaaaatctccaatacttcatc	3	13	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	96964556	96964556	C	A	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.879	p.L293F	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	135	0	0	114	19	14.29	-	-	-	A	96964556	C	A	96964556	3	1	275	1	0	0	0	0	1	0	0	0	14941	825	29	2	5687	2	SNRNP200	2	96964556	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	166099	96964556	146234817	709	26396										
CNNM4	0	genome.wustl.edu	37	chr2	97427969	97427969	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatactcgcatcccggtgttCgaagacgagcagtccaatat	9	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	97427969	97427969	C	T	SNP	CNNM4	ENST00000377075	human	ensembl	69_37n	1	known	silent	c.1233	p.F411	0.819	NULL	pfam_DUF21,pfam_Cysta_beta_synth_core,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158	99	0	0	59	12	16.67	-	-	-	T	97427969	C	T	97427969	2	4	275	1	0	0	0	0	0	0	0	1	3645	883	31	1		1	CNNM4	2	97427969	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	463413	97427969	145771404	710	26397										
ANKRD36	0	genome.wustl.edu	37	chr2	97788702	97788702	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttattaaagaaaaaagcaAatgtaaatgccattgattat	5	3	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	97788702	97788702	A	C	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.565	p.N189H	0.004	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	327	0	0	251	96	27.67	-	-	-	C	97788702	A	C	97788702	3	2	275	1	0	0	0	0	1	0	0	0	664	14	1	5	579	5	ANKRD36	2	97788702	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	360733	97788702	145410671	711	26398										
ANKRD36	0	genome.wustl.edu	37	chr2	97864373	97864373	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatatagccagaggaaaaaaGgatggagaaaaaactaagag	11	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	97864373	97864373	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	silent	c.2733	p.K911	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	144	0	0	112	22	16.42	-	-	-	A	97864373	G	A	97864373	2	1	275	1	0	0	0	0	0	0	0	1	664	991	35	4		4	ANKRD36	2	97864373	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75671	97864373	145335000	712	26399										
ZAP70	0	genome.wustl.edu	37	chr2	98351029	98351029	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggccgatgcccatggacacGagcgtgtatgagagccccta	13	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	98351029	98351029	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	silent	c.936	p.T312	0.000	superfamily_Kinase-like_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	108	0	0	45	6	11.76	-	-	-	A	98351029	G	A	98351029	2	1	275	1	0	0	0	0	0	0	0	1	17611	1045	37	1		1	ZAP70	2	98351029	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	486656	98351029	144848344	713	26400										
TMEM131	0	genome.wustl.edu	37	chr2	98392342	98392342	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtgtcagggttggaggtCtctgtggtggtggaggagct	19	5	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	98392342	98392342	C	A	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.4284	p.E1428D	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	702	0	0	461	76	14.15	-	-	-	A	98392342	C	A	98392342	3	1	275	1	0	0	0	0	1	0	0	0	16139	912	32	2	1407	2	TMEM131	2	98392342	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41313	98392342	144807031	714	26401										
TMEM131	0	genome.wustl.edu	37	chr2	98418928	98418928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaacactgaagggttggAatataaagccagaggaataa	10	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	98418928	98418928	A	G	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.2614	p.S872P	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	147	0	0	121	18	12.95	-	-	-	G	98418928	A	G	98418928	3	3	275	1	0	0	0	0	1	0	0	0	16139	246	9	5	3109	5	TMEM131	2	98418928	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	26586	98418928	144780445	715	26402										
VWA3B	0	genome.wustl.edu	37	chr2	98744744	98744744	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtgggggatgttcctgaaGaatccaaggagcttctcctc	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	98744744	98744744	G	T	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	nonsense	c.745	p.E249*	0.050	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	900	0	0	668	106	13.68	-	-	-	T	98744744	G	T	98744744	4	4	275	1	0	0	0	0	0	1	0	0	17338	943	33	2	763	2	VWA3B	2	98744744	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	325816	98744744	144454629	716	26403										
VWA3B	0	genome.wustl.edu	37	chr2	98928331	98928331	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcttctggccactgaaaGaagcggacacgcaggattcc	10	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	98928331	98928331	G	T	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	nonsense	c.3571	p.E1191*	0.001	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	91	0	0	36	14	28	-	-	-	T	98928331	G	T	98928331	4	4	275	1	0	0	0	0	0	1	0	0	17338	943	33	2	3673	2	VWA3B	2	98928331	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	183587	98928331	144271042	717	26404										
CNGA3	0	genome.wustl.edu	37	chr2	99008336	99008336	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcttctttagggcctgtttCgatgagctgcagtccgagta	13	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99008336	99008336	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	silent	c.576	p.F192	1.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	252	0	0	158	48	23.19	-	-	-	T	99008336	C	T	99008336	2	4	275	1	0	0	0	0	0	0	0	1	3628	883	31	1		1	CNGA3	2	99008336	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80005	99008336	144191037	718	26405										
UNC50	0	genome.wustl.edu	37	chr2	99232673	99232673	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaattttgctcttaggttCatctctaacaagtatttagt	5	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99232673	99232673	C	A	SNP	UNC50	ENST00000393493	human	ensembl	69_37n	1	novel	nonsense	c.5	p.S2*	0.984	pfam_UNC-50	pfam_UNC-50	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UNC50	HGNC	ENSG00000115446	280	0	0	249	44	15.02	-	-	-	A	99232673	C	A	99232673	4	1	275	1	0	0	0	0	0	1	0	0	17087	825	29	2	415	2	UNC50	2	99232673	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	224337	99232673	143966700	719	26406										
TSGA10	0	genome.wustl.edu	37	chr2	99634699	99634699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaggcctcggtcaggagatCgatggtgagcacgttctggt	15	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99634699	99634699	C	T	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.2036	p.R679Q	0.995	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	242	0	0	161	25	13.37	-	-	-	T	99634699	C	T	99634699	3	4	275	1	0	0	0	0	1	0	0	0	16713	884	31	1	68	1	TSGA10	2	99634699	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	402026	99634699	143564674	720	26407										
TSGA10	0	genome.wustl.edu	37	chr2	99722136	99722136	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttttcatcatttctcgtcGaagtcgggtaatttcttcct	7	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99722136	99722136	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	nonsense	c.235	p.R79*	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	676	1	0.15	362	75	17.16	-	-	-	A	99722136	G	A	99722136	4	1	275	1	0	0	0	0	0	1	0	0	16713	1066	37	1	1917	1	TSGA10	2	99722136	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	87437	99722136	143477237	721	26408										
LIPT1	0	genome.wustl.edu	37	chr2	99778612	99778612	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggcaaaccaattctattCttttggcagaattctccctc	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99778612	99778612	C	A	SNP	LIPT1	ENST00000340066	human	ensembl	69_37n	1	known	missense	c.192	p.F64L	0.995	tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182	198	0	0	203	35	14.71	-	-	-	A	99778612	C	A	99778612	3	1	275	1	0	0	0	0	1	0	0	0	8885	912	32	2	194	2	LIPT1	2	99778612	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56476	99778612	143420761	722	26409										
MITD1	0	genome.wustl.edu	37	chr2	99790403	99790403	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttggtccaagtacttCtttatgttttccgctctgtc	6	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	99790403	99790403	C	A	SNP	MITD1	ENST00000289359	human	ensembl	69_37n	-1	known	missense	c.228	p.K76N	0.998	pfam_MIT,smart_MIT	pfam_MIT,smart_MIT	-	no_errors	MITD1	HGNC	ENSG00000158411	791	0	0	730	109	12.98	-	-	-	A	99790403	C	A	99790403	3	1	275	1	0	0	0	0	1	0	0	0	9666	912	32	2	545	2	MITD1	2	99790403	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11791	99790403	143408970	723	26410										
LONRF2	0	genome.wustl.edu	37	chr2	100911961	100911961	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattcatccggcaaatatcGaaatattaattcttcggcca	5	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	100911961	100911961	G	A	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	nonsense	c.1531	p.R511*	0.005	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	186	0	0	150	25	14.29	-	-	-	A	100911961	G	A	100911961	4	1	275	1	0	0	0	0	0	1	0	0	8961	1066	37	1	753	1	LONRF2	2	100911961	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1121558	100911961	142287412	724	26411										
NPAS2	0	genome.wustl.edu	37	chr2	101581341	101581341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaaatgtgcatagttgacGaacctttagaggaattcact	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	101581341	101581341	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.931	p.E311K	1.000	smart_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	151	0	0	91	13	12.38	-	-	-	A	101581341	G	A	101581341	3	1	275	1	0	0	0	0	1	0	0	0	10635	1059	37	1	766	1	NPAS2	2	101581341	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	669380	101581341	141618032	725	26412										
NPAS2	0	genome.wustl.edu	37	chr2	101598697	101598697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggctccaccttgaagttttCggcacagttcagcatgttcc	9	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	101598697	101598697	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.1682	p.S561L	0.650	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	140	0	0	111	15	11.9	-	-	-	T	101598697	C	T	101598697	3	4	275	1	0	0	0	0	1	0	0	0	10635	893	31	1	1545	1	NPAS2	2	101598697	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17356	101598697	141600676	726	26413										
IL1R1	0	genome.wustl.edu	37	chr2	102793213	102793213	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagaggctcacgtgcctctCgggtagcatggagaagttgc	15	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	102793213	102793213	C	T	SNP	IL1R1	ENST00000233946	human	ensembl	69_37n	1	known	silent	c.1704	p.L568	0.000	prints_IL1R_rcpt	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,prints_IL1R_rcpt,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1R1	HGNC	ENSG00000115594	180	0	0	114	55	32.54	-	-	-	T	102793213	C	T	102793213	2	4	275	1	0	0	0	0	0	0	0	1	7712	871	31	1		1	IL1R1	2	102793213	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1194516	102793213	140406160	727	26414										
IL1RL2	0	genome.wustl.edu	37	chr2	102805546	102805546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttccctagatggatgcaaGgacatttttatgaaaaatga	8	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	102805546	102805546	G	T	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.69	p.K23N	0.069	pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	93	0	0	58	8	12.12	-	-	-	T	102805546	G	T	102805546	3	4	275	1	0	0	0	0	1	0	0	0	7718	991	35	4	75	4	IL1RL2	2	102805546	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12333	102805546	140393827	728	26415										
IL1RL2	0	genome.wustl.edu	37	chr2	102842469	102842469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgacattgttctttggtatcGaagtgccttccattctacag	8	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	102842469	102842469	G	A	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.1103	p.R368Q	0.998	prints_IL1_rcpt_1	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	247	0	0	227	39	14.66	-	-	-	A	102842469	G	A	102842469	3	1	275	1	0	0	0	0	1	0	0	0	7718	1058	37	1	1133	1	IL1RL2	2	102842469	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36923	102842469	140356904	729	26416										
IL18R1	0	genome.wustl.edu	37	chr2	102992398	102992398	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctactactggagaacaataAaaacccaacgataaagaaga	7	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	102992398	102992398	A	C	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	1	known	missense	c.500	p.K167T	0.000	smart_Ig_sub	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	218	0	0	166	59	26.22	-	-	-	C	102992398	A	C	102992398	3	2	275	1	0	0	0	0	1	0	0	0	7701	14	1	5	514	5	IL18R1	2	102992398	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	149929	102992398	140206975	730	26417										
C2orf40	0	genome.wustl.edu	37	chr2	106688319	106688319	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggcataagtggaaataaActcaagctgatgcttcaaaa	10	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	106688319	106688319	A	C	SNP	C2orf40	ENST00000238044	human	ensembl	69_37n	1	known	missense	c.99	p.K33N	0.996	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147	214	0	0	142	26	15.48	-	-	-	C	106688319	A	C	106688319	3	2	275	1	0	0	0	0	1	0	0	0	2185	40	2	5	105	5	C2orf40	2	106688319	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3695921	106688319	136511054	731	26418										
RGPD3	0	genome.wustl.edu	37	chr2	107040336	107040336	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatcatatctgtagaattCtgccctgtgactaaaaacaa	5	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	107040336	107040336	C	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	nonsense	c.4087	p.E1363*	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	190	0	0	116	22	15.94	-	-	-	A	107040336	C	A	107040336	4	1	275	1	0	0	0	0	0	1	0	0	13370	922	32	2	1205	2	RGPD3	2	107040336	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	352017	107040336	136159037	732	26419										
GCC2	0	genome.wustl.edu	37	chr2	109087262	109087262	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatggaaattttacaaacaGaactgggggaatctgctgga	11	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109087262	109087262	G	T	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	nonsense	c.1477	p.E493*	0.999	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	26	0	0	24	10	29.41	-	-	-	T	109087262	G	T	109087262	4	4	275	1	0	0	0	0	0	1	0	0	6336	943	33	2	1499	2	GCC2	2	109087262	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2046926	109087262	134112111	733	26420										
GCC2	0	genome.wustl.edu	37	chr2	109109117	109109117	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcccagaacgaggtccttCgaaatagcttccgagatcaa	8	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109109117	109109117	C	T	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	nonsense	c.4318	p.R1440*	0.987	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	227	0	0	124	32	20.51	-	-	-	T	109109117	C	T	109109117	4	4	275	1	0	0	0	0	0	1	0	0	6336	876	31	1	4392	1	GCC2	2	109109117	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21855	109109117	134090256	734	26421										
RANBP2	0	genome.wustl.edu	37	chr2	109381329	109381329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagaatacaaaatctgctaAcaaaagtggatcttcatttg	6	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109381329	109381329	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.4334	p.N1445S	0.085	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	121	0	0	78	25	24.27	-	-	-	G	109381329	A	G	109381329	3	3	275	1	0	0	0	0	1	0	0	0	13111	43	2	5	4412	5	RANBP2	2	109381329	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	272212	109381329	133818044	735	26422										
RANBP2	0	genome.wustl.edu	37	chr2	109388956	109388956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattttaagatgaagatttcGaaacagctgtcaagaaactt	7	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109388956	109388956	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.8032	p.E2678K	1.000	pfam_IR1-M	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	178	0	0	126	18	12.5	-	-	-	A	109388956	G	A	109388956	3	1	275	1	0	0	0	0	1	0	0	0	13111	1059	37	1	8118	1	RANBP2	2	109388956	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7627	109388956	133810417	736	26423										
CCDC138	0	genome.wustl.edu	37	chr2	109432533	109432533	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcaaatttgcttcccagaGaaatgatattcaggagaagt	8	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109432533	109432533	G	T	SNP	CCDC138	ENST00000456512	human	ensembl	69_37n	1	novel	nonsense	c.868	p.E290*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	CCDC138	HGNC	ENSG00000163006	268	0	0	215	35	14	-	-	-	T	109432533	G	T	109432533	4	4	275	1	0	0	0	0	0	1	0	0	2797	942	33	2	1216	2	CCDC138	2	109432533	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43577	109432533	133766840	737	26424										
EDAR	0	genome.wustl.edu	37	chr2	109546662	109546662	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtactcgttctcaccgcagtTtgagtattccgctcgggctg	11	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	109546662	109546662	T	G	SNP	EDAR	ENST00000376651	human	ensembl	69_37n	-1	known	missense	c.88	p.N30H	1.000	NULL	pfam_Death,superfamily_DEATH-like	-	no_errors	EDAR	HGNC	ENSG00000135960	46	0	0	31	8	20.51	-	-	-	G	109546662	T	G	109546662	3	3	275	1	0	0	0	0	1	0	0	0	4940	1841	64	5	1298	5	EDAR	2	109546662	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	114129	109546662	133652711	738	26425										
NPHP1	0	genome.wustl.edu	37	chr2	110905498	110905498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcaacggacatacattgcGaatataagaaattccaagtt	6	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	110905498	110905498	G	A	SNP	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	missense	c.1432	p.R478C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	93	0	0	70	11	13.58	-	-	-	A	110905498	G	A	110905498	3	1	275	1	0	0	0	0	1	0	0	0	10651	1058	37	1	801	1	NPHP1	2	110905498	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1358836	110905498	132293875	739	26426										
BUB1	0	genome.wustl.edu	37	chr2	111416309	111416309	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtgttggcaaccttatgTgtttcacaccctagcaaaga	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	111416309	111416309	T	C	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	silent	c.1287	p.T429	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	482	0	0	366	58	13.68	-	-	-	C	111416309	T	C	111416309	2	2	275	1	0	0	0	0	0	0	0	1	1579	1683	59	5		5	BUB1	2	111416309	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	510811	111416309	131783064	740	26427										
ACOXL	0	genome.wustl.edu	37	chr2	111721256	111721256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgacacagatgtgtttgCcacttttgaaggtgacgatg	13	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	111721256	111721256	C	T	SNP	ACOXL	ENST00000389811	human	ensembl	69_37n	1	novel	missense	c.1115	p.A372V	0.613	pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	626	1	0.16	415	114	21.47	-	-	-	T	111721256	C	T	111721256	3	4	275	1	0	0	0	0	1	0	0	0	161	754	26	4		4	ACOXL	2	111721256	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	304947	111721256	131478117	741	26428										
ANAPC1	0	genome.wustl.edu	37	chr2	112526921	112526921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaggagccaatctcagcaAagctcgcactggcattttta	8	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	112526921	112526921	A	C	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.5782	p.L1928V	0.996	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	69	0	0	52	10	16.13	-	-	-	C	112526921	A	C	112526921	3	2	275	1	0	0	0	0	1	0	0	0	598	11	1	5	56	5	ANAPC1	2	112526921	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	805665	112526921	130672452	742	26429										
MERTK	0	genome.wustl.edu	37	chr2	112705105	112705105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacagtagccgtgttaacGaacagcctgaaaaatccccc	7	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	112705105	112705105	G	A	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	missense	c.718	p.E240K	0.004	smart_Ig_sub,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	108	0	0	77	15	16.3	-	-	-	A	112705105	G	A	112705105	3	1	275	1	0	0	0	0	1	0	0	0	9550	1059	37	1	732	1	MERTK	2	112705105	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	178184	112705105	130494268	743	26430										
TMEM87B	0	genome.wustl.edu	37	chr2	112849293	112849293	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttttatctttcagggttCtaaccatttagctgttgttc	6	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	112849293	112849293	C	A	SNP	TMEM87B	ENST00000283206	human	ensembl	69_37n	1	known	missense	c.1037	p.S346Y	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214	788	2	0.25	704	89	11.21	-	-	-	A	112849293	C	A	112849293	3	1	275	1	0	0	0	0	1	0	0	0	16306	913	32	2	1079	2	TMEM87B	2	112849293	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	144188	112849293	130350080	744	26431										
ZC3H8	0	genome.wustl.edu	37	chr2	112988455	112988455	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgttcagacaagaaaaaaaGaaatgtggtaaattctaatt	7	3	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	112988455	112988455	G	T	SNP	ZC3H8	ENST00000476902	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC3H8	HGNC	ENSG00000144161	316	0	0	141	35	19.89	-	-	-	T	112988455	G	T	112988455	1	4	275	0	1	0	0	0	0	0	0	0	17670	957	33	2		2	ZC3H8	2	112988455	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	139162	112988455	130210918	745	26432										
ZC3H6	0	genome.wustl.edu	37	chr2	113079352	113079352	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgaatttccatgcaagttCtatcatagtggagcaaaatg	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	113079352	113079352	C	A	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.996	p.F332L	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	185	0	0	94	32	25.4	-	-	-	A	113079352	C	A	113079352	3	1	275	1	0	0	0	0	1	0	0	0	17667	912	32	2	1026	2	ZC3H6	2	113079352	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90897	113079352	130120021	746	26433										
ACTR3	0	genome.wustl.edu	37	chr2	114699934	114699934	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaaatcttttttcatccaGaggtaattttttttaacgga	6	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	114699934	114699934	G	T	SNP	ACTR3	ENST00000263238	human	ensembl	69_37n	1	known	nonsense	c.856	p.E286*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR3	HGNC	ENSG00000115091	247	0	0	161	22	12.02	-	-	-	T	114699934	G	T	114699934	4	4	275	1	0	0	0	0	0	1	0	0	212	943	33	2	886	2	ACTR3	2	114699934	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1620582	114699934	128499439	747	26434										
DPP10	0	genome.wustl.edu	37	chr2	116447289	116447289	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattattcgtatactgcttcAtatgtgatttacaacataca	4	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	116447289	116447289	A	G	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	silent	c.480	p.S160	0.954	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	424	0	0	367	43	10.49	-	-	-	G	116447289	A	G	116447289	2	3	275	1	0	0	0	0	0	0	0	1	4762	204	8	5		5	DPP10	2	116447289	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1747355	116447289	126752084	748	26435										
DPP10	0	genome.wustl.edu	37	chr2	116534789	116534789	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctatttctttgcagagtaaAagtgagcaaattaccgtgcg	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	116534789	116534789	A	C	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.1239	p.K413N	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	348	0	0	215	36	14.34	-	-	-	C	116534789	A	C	116534789	3	2	275	1	0	0	0	0	1	0	0	0	4762	11	1	5	1452	5	DPP10	2	116534789	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	87500	116534789	126664584	749	26436										
DDX18	0	genome.wustl.edu	37	chr2	118575069	118575069	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaatggagatgtatctgaAgaaacaatgggaagtagaaa	11	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	118575069	118575069	A	C	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	missense	c.135	p.E45D	0.750	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	75	0	0	44	6	12	-	-	-	C	118575069	A	C	118575069	3	2	275	1	0	0	0	0	1	0	0	0	4376	69	3	5	141	5	DDX18	2	118575069	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2040280	118575069	124624304	750	26437										
DDX18	0	genome.wustl.edu	37	chr2	118586966	118586966	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcccattctctgaaacagatCtttaatgttaataacctaaa	3	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	118586966	118586966	C	A	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	silent	c.1794	p.I598	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	179	0	0	134	46	25.56	-	-	-	A	118586966	C	A	118586966	2	1	275	1	0	0	0	0	0	0	0	1	4376	903	32	2		2	DDX18	2	118586966	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11897	118586966	124612407	751	26438										
CCDC93	0	genome.wustl.edu	37	chr2	118753908	118753908	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatagtcacccatctcttCttttgtttctatagctcgtt	5	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	118753908	118753908	C	A	SNP	CCDC93	ENST00000376300	human	ensembl	69_37n	-1	known	nonsense	c.394	p.E132*	1.000	pfam_DUF2037	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633	457	0	0	349	52	12.94	-	-	-	A	118753908	C	A	118753908	4	1	275	1	0	0	0	0	0	1	0	0	2899	922	32	2	1581	2	CCDC93	2	118753908	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	166942	118753908	124445465	752	26439										
DBI	0	genome.wustl.edu	37	chr2	120129876	120129876	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaaagtagaagagctaaaGaaaaaatacgggatatgaga	10	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	120129876	120129876	G	T	SNP	DBI	ENST00000542275	human	ensembl	69_37n	1	known	missense	c.429	p.K143N	0.994	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	DBI	HGNC	ENSG00000155368	224	0	0	107	25	18.94	-	-	-	T	120129876	G	T	120129876	3	4	275	1	0	0	0	0	1	0	0	0	4283	933	33	2	566	2	DBI	2	120129876	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1375968	120129876	123069497	753	26440										
PCDP1	0	genome.wustl.edu	37	chr2	120369304	120369304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagccataaacgggttgttCgcaatcaagaagaggtgggt	13	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	120369304	120369304	C	T	SNP	PCDP1	ENST00000413369	human	ensembl	69_37n	1	known	missense	c.1297	p.R433C	0.005	NULL	NULL	-	no_errors	AC069154.2	Clone_based_vega_gene	ENSG00000163075	461	0	0	284	47	14.16	-	-	-	T	120369304	C	T	120369304	3	4	275	1	0	0	0	0	1	0	0	0	11645	884	31	1	457	1	PCDP1	2	120369304	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	239428	120369304	122830069	754	26441										
EPB41L5	0	genome.wustl.edu	37	chr2	120848067	120848067	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcatcgatcaggatttattCgactaggatcacgatttaga	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	120848067	120848067	C	T	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	nonsense	c.1018	p.R340*	1.000	pfam_FERM-adjacent	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	269	0	0	132	45	25.28	-	-	-	T	120848067	C	T	120848067	4	4	275	1	0	0	0	0	0	1	0	0	5194	876	31	1	1060	1	EPB41L5	2	120848067	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	478763	120848067	122351306	755	26442										
RALB	0	genome.wustl.edu	37	chr2	121050755	121050755	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagaaatcagaacaaagaaGatgtcagaaaacaaagacaa	8	5	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	121050755	121050755	G	A	SNP	RALB	ENST00000474855	human	ensembl	69_37n	1	known	silent	c.606	p.K202	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118	572	0	0	492	85	14.73	-	-	-	A	121050755	G	A	121050755	2	1	275	1	0	0	0	0	0	0	0	1	13094	933	33	2		2	RALB	2	121050755	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	202688	121050755	122148618	756	26443										
CLASP1	0	genome.wustl.edu	37	chr2	122204965	122204965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgcagagctgaaaggcgtCgtgcccgaagatgaggagac	16	9	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	122204965	122204965	C	T	SNP	CLASP1	ENST00000452274	human	ensembl	69_37n	-1	known	missense	c.1202	p.R401Q	0.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CLASP1	HGNC	ENSG00000074054	246	0	0	178	23	11.39	-	-	-	T	122204965	C	T	122204965	3	4	275	1	0	0	0	0	1	0	0	0	3484	871	31	1	2896	1	CLASP1	2	122204965	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1154210	122204965	120994408	757	26444										
CNTNAP5	0	genome.wustl.edu	37	chr2	125232366	125232366	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctgggacctttttaaaGaaaaacttccatggatgcat	7	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	125232366	125232366	G	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.969	p.K323N	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	178	0	0	108	21	16.28	-	-	-	T	125232366	G	T	125232366	3	4	275	1	0	0	0	0	1	0	0	0	3680	933	33	2	995	2	CNTNAP5	2	125232366	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3027401	125232366	117967007	758	26445										
CNTNAP5	0	genome.wustl.edu	37	chr2	125367443	125367443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccggcttcttctacatcGactcagatggcagcggccca	10	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	125367443	125367443	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.1819	p.D607N	0.996	superfamily_Fibrinogen_a/b/g_C	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	101	0	0	60	25	29.41	-	-	-	A	125367443	G	A	125367443	3	1	275	1	0	0	0	0	1	0	0	0	3680	1058	37	1	1865	1	CNTNAP5	2	125367443	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135077	125367443	117831930	759	26446										
WDR33	0	genome.wustl.edu	37	chr2	128471176	128471176	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttcttctctgcgccctcGaaaacgtgggtcctcgggat	10	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	128471176	128471176	G	A	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	nonsense	c.3289	p.R1097*	0.998	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	102	0	0	33	19	36.54	-	-	-	A	128471176	G	A	128471176	4	1	275	1	0	0	0	0	0	1	0	0	17384	1066	37	1	741	1	WDR33	2	128471176	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3103733	128471176	114728197	760	26447										
UGGT1	0	genome.wustl.edu	37	chr2	128910422	128910422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagccaaatgttgttccacGaatcaattctaggattttga	7	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	128910422	128910422	G	A	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.2081	p.R694Q	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	197	0	0	188	41	17.9	-	-	-	A	128910422	G	A	128910422	3	1	275	1	0	0	0	0	1	0	0	0	17038	1058	37	1	2155	1	UGGT1	2	128910422	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	439246	128910422	114288951	761	26448										
UGGT1	0	genome.wustl.edu	37	chr2	128930289	128930289	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacctgagagctggatggtaGaatctgtcagaacaccatat	10	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	128930289	128930289	G	T	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	nonsense	c.3247	p.E1083*	1.000	pfam_UDP-g_GGtrans	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	232	0	0	197	30	13.22	-	-	-	T	128930289	G	T	128930289	4	4	275	1	0	0	0	0	0	1	0	0	17038	943	33	2	3361	2	UGGT1	2	128930289	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19867	128930289	114269084	762	26449										
UGGT1	0	genome.wustl.edu	37	chr2	128932423	128932423	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgctctgaagatatttataGaatttacaggtaggagtaag	10	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	128932423	128932423	G	T	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.3530	p.R1177I	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	266	0	0	194	51	20.82	-	-	-	T	128932423	G	T	128932423	3	4	275	1	0	0	0	0	1	0	0	0	17038	942	33	2	3652	2	UGGT1	2	128932423	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2134	128932423	114266950	763	26450										
RAB6C	0	genome.wustl.edu	37	chr2	130738363	130738363	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaagcccccttactctttCattgactgcagtgtgaatat	7	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	130738363	130738363	C	A	SNP	RAB6C	ENST00000410061	human	ensembl	69_37n	1	known	missense	c.675	p.F225L	0.905	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6C	HGNC	ENSG00000222014	345	0	0	186	67	26.48	-	-	-	A	130738363	C	A	130738363	3	1	275	1	0	0	0	0	1	0	0	0	13036	825	29	2	677	2	RAB6C	2	130738363	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1805940	130738363	112461010	764	26451										
POTEF	0	genome.wustl.edu	37	chr2	130858275	130858275	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaccatccttatttatttCtggttcttgagacattttct	4	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	130858275	130858275	C	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	nonsense	c.1216	p.E406*	0.044	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	379	0	0	190	55	22.45	-	-	-	A	130858275	C	A	130858275	4	1	275	1	0	0	0	0	0	1	0	0	12339	922	32	2	2043	2	POTEF	2	130858275	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	119912	130858275	112341098	765	26452										
TUBA3E	0	genome.wustl.edu	37	chr2	130951527	130951527	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatctgattggctggctcGaagcaggcattggtgatctc	12	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	130951527	130951527	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	silent	c.888	p.F296	0.990	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	111	0	0	70	15	17.65	-	-	-	A	130951527	G	A	130951527	2	1	275	1	0	0	0	0	0	0	0	1	16845	1049	37	1		1	TUBA3E	2	130951527	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	93252	130951527	112247846	766	26453										
FAM123C	0	genome.wustl.edu	37	chr2	131519826	131519826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagccagccccagtgcccaaGaatacgacagatgccccaac	8	16	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	131519826	131519826	G	T	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	nonsense	c.181	p.E61*	0.003	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	61	0	0	24	5	17.24	-	-	-	T	131519826	G	T	131519826	4	4	275	1	0	0	0	0	0	1	0	0	5464	943	33	2	183	2	FAM123C	2	131519826	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	568299	131519826	111679547	767	26454										
FAM123C	0	genome.wustl.edu	37	chr2	131519839	131519839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcccaagaatacgacagatGccccaacaaaggggcgcagc	11	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	131519839	131519839	G	A	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	missense	c.194	p.C65Y	0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	59	0	0	20	5	20	-	-	-	A	131519839	G	A	131519839	3	1	275	1	0	0	0	0	1	0	0	0	5464	1319	46	4	196	4	FAM123C	2	131519839	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13	131519839	111679534	768	26455										
GPR39	0	genome.wustl.edu	37	chr2	133402941	133402941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaccacgagaagcgcctgcGcgtacatgcgcactccacca	9	17	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	133402941	133402941	G	A	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	missense	c.1124	p.R375H	0.322	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	49	0	0	23	4	14.81	-	-	-	A	133402941	G	A	133402941	3	1	275	1	0	0	0	0	1	0	0	0	6743	1087	38	1	1130	1	GPR39	2	133402941	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1883102	133402941	109796432	769	26456										
NCKAP5	0	genome.wustl.edu	37	chr2	133543153	133543153	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggttcaagtaacacttttcGcttctgtagctttcttagcc	8	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	133543153	133543153	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	nonsense	c.1231	p.R411*	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	212	0	0	179	23	11.39	-	-	-	A	133543153	G	A	133543153	4	1	275	1	0	0	0	0	0	1	0	0	10295	1095	38	1	4526	1	NCKAP5	2	133543153	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	140212	133543153	109656220	770	26457										
YSK4	0	genome.wustl.edu	37	chr2	135745745	135745745	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaatgtttctttctttttCttttggaaacttgtgatttt	7	4	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	135745745	135745745	C	A	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	nonsense	c.697	p.E233*	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	94	0	0	67	12	15.19	-	-	-	A	135745745	C	A	135745745	4	1	275	1	0	0	0	0	0	1	0	0	17592	922	32	2	3305	2	YSK4	2	135745745	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2202592	135745745	107453628	771	26458										
R3HDM1	0	genome.wustl.edu	37	chr2	136374262	136374262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcaaagttaaagctagttCggagccttgcagtgtgtgaa	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	136374262	136374262	C	T	SNP	R3HDM1	ENST00000264160	human	ensembl	69_37n	1	known	missense	c.238	p.R80W	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	119	0	0	85	21	19.81	-	-	-	T	136374262	C	T	136374262	3	4	275	1	0	0	0	0	1	0	0	0	12970	875	31	1	248	1	R3HDM1	2	136374262	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	628517	136374262	106825111	772	26459										
UBXN4	0	genome.wustl.edu	37	chr2	136511807	136511807	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaatagcaggaagtgtttCtgcagatgaacttgttacaa	10	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	136511807	136511807	C	A	SNP	UBXN4	ENST00000272638	human	ensembl	69_37n	1	known	missense	c.293	p.S98Y	1.000	superfamily_Thioredoxin-like_fold	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224	180	0	0	143	46	24.34	-	-	-	A	136511807	C	A	136511807	3	1	275	1	0	0	0	0	1	0	0	0	17013	913	32	2	307	2	UBXN4	2	136511807	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	137545	136511807	106687566	773	26460										
LCT	0	genome.wustl.edu	37	chr2	136569977	136569977	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgggcatgccattcccggCaaggtatattggaacttttc	10	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	136569977	136569977	C	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2257	p.A753S	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	134	0	0	90	33	26.83	-	-	-	A	136569977	C	A	136569977	3	1	275	1	0	0	0	0	1	0	0	0	8747	710	25	4	3570	4	LCT	2	136569977	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	58170	136569977	106629396	774	26461										
CXCR4	0	genome.wustl.edu	37	chr2	136872894	136872894	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggccaaccatgatgtgctGaaactggaacacaaccaccc	8	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	136872894	136872894	G	T	SNP	CXCR4	ENST00000409817	human	ensembl	69_37n	-1	known	missense	c.616	p.Q206K	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_Chemokine_CXCR4_N,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CXCR4	HGNC	ENSG00000121966	104	0	0	83	18	17.82	-	-	-	T	136872894	G	T	136872894	3	4	275	1	0	0	0	0	1	0	0	0	4124	1299	45	2	458	2	CXCR4	2	136872894	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	302917	136872894	106326479	775	26462										
NXPH2	0	genome.wustl.edu	37	chr2	139428886	139428886	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccatttccatggtcaacaAttttccctgtgatgaggaga	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	139428886	139428886	A	C	SNP	NXPH2	ENST00000272641	human	ensembl	69_37n	-1	known	missense	c.401	p.I134S	1.000	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH2	HGNC	ENSG00000144227	257	0	0	213	31	12.7	-	-	-	C	139428886	A	C	139428886	3	2	275	1	0	0	0	0	1	0	0	0	10864	101	4	5	397	5	NXPH2	2	139428886	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2555992	139428886	103770487	776	26463										
LRP1B	0	genome.wustl.edu	37	chr2	141143522	141143522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctatcacaccgccagtgatCgggaatacagttgttgtttt	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	141143522	141143522	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.10471	p.D3491N	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	355	0	0	208	26	11.06	-	-	-	T	141143522	C	T	141143522	3	4	275	1	0	0	0	0	1	0	0	0	9021	884	31	1	3428	1	LRP1B	2	141143522	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1714636	141143522	102055851	777	26464										
LRP1B	0	genome.wustl.edu	37	chr2	141294172	141294172	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtagagcagtttttcatcTgatttatctttacagtgagg	9	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	141294172	141294172	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.7620	p.S2540	0.063	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	334	0	0	213	79	27.05	-	-	-	G	141294172	T	G	141294172	2	3	275	1	0	0	0	0	0	0	0	1	9021	1567	55	5		5	LRP1B	2	141294172	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	150650	141294172	101905201	778	26465										
LRP1B	0	genome.wustl.edu	37	chr2	141459810	141459810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attccctccagtctcaaggtCgattctctctatcttgtctg	6	13	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	141459810	141459810	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.6202	p.D2068N	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	369	1	0.27	230	28	10.85	-	-	-	T	141459810	C	T	141459810	3	4	275	1	0	0	0	0	1	0	0	0	9021	884	31	1	7809	1	LRP1B	2	141459810	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165638	141459810	101739563	779	26466										
LRP1B	0	genome.wustl.edu	37	chr2	142238042	142238042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgggataaatgaacacatTtgttggtaccaaggcaagca	11	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	142238042	142238042	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.266	p.K89T	0.022	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	262	0	0	181	66	26.72	-	-	-	G	142238042	T	G	142238042	3	3	275	1	0	0	0	0	1	0	0	0	9021	1841	64	5	13889	5	LRP1B	2	142238042	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	778232	142238042	100961331	780	26467										
MBD5	0	genome.wustl.edu	37	chr2	149247432	149247432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatgggaaaaatgtgaacGaaggagatgggtttgaatat	13	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	149247432	149247432	G	A	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	missense	c.3532	p.E1178K	0.998	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	157	0	0	110	43	28.1	-	-	-	A	149247432	G	A	149247432	3	1	275	1	0	0	0	0	1	0	0	0	9418	1059	37	1	3558	1	MBD5	2	149247432	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7009390	149247432	93951941	781	26468										
KIF5C	0	genome.wustl.edu	37	chr2	149806436	149806436	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgctcttggaaatgtgatCtctgctttggcagaagggac	12	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	149806436	149806436	C	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	silent	c.798	p.I266	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	309	0	0	197	28	12.44	-	-	-	A	149806436	C	A	149806436	2	1	275	1	0	0	0	0	0	0	0	1	8359	903	32	2		2	KIF5C	2	149806436	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	559004	149806436	93392937	782	26469										
RND3	0	genome.wustl.edu	37	chr2	151326710	151326710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgactgtaaagctgagcattCgatataagtagctgctccaa	9	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	151326710	151326710	C	T	SNP	RND3	ENST00000263895	human	ensembl	69_37n	-1	known	missense	c.526	p.E176K	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963	320	1	0.31	199	27	11.89	-	-	-	T	151326710	C	T	151326710	3	4	275	1	0	0	0	0	1	0	0	0	13507	893	31	1	212	1	RND3	2	151326710	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1520274	151326710	91872663	783	26470										
NMI	0	genome.wustl.edu	37	chr2	152128236	152128236	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattctttctttttcaaaatCttgtcagccactaaaagcaa	3	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152128236	152128236	C	A	SNP	NMI	ENST00000243346	human	ensembl	69_37n	-1	known	missense	c.645	p.K215N	0.852	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	NMI	HGNC	ENSG00000123609	310	0	0	217	48	17.98	-	-	-	A	152128236	C	A	152128236	3	1	275	1	0	0	0	0	1	0	0	0	10569	912	32	2	286	2	NMI	2	152128236	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	801526	152128236	91071137	784	26471										
NEB	0	genome.wustl.edu	37	chr2	152483720	152483720	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatcagatttgtaaatgttCtggagagattaaacacaaaa	8	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152483720	152483720	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	splice_site	c.10144-1	e68-1	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091	255	0	0	168	25	12.89	-	-	-	T	152483720	C	T	152483720	5	4	275	1	0	0	0	0	0	0	1	0	10374	927	32	2	15995	2	NEB	2	152483720	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	355484	152483720	90715653	785	26472										
NEB	0	genome.wustl.edu	37	chr2	152547256	152547256	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttacatcactaagctgtttCgtgttgagctgggcttgcaa	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152547256	152547256	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.2295	p.T765	0.994	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	523	1	0.19	272	95	25.75	-	-	-	T	152547256	C	T	152547256	2	4	275	1	0	0	0	0	0	0	0	1	10374	871	31	1		1	NEB	2	152547256	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	63536	152547256	90652117	786	26473										
NEB	0	genome.wustl.edu	37	chr2	152553955	152553955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaaatatcttttaagtagGaatctttatattttttctgc	4	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152553955	152553955	G	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.1274	p.S425Y	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	768	0	0	644	85	11.64	-	-	-	T	152553955	G	T	152553955	3	4	275	1	0	0	0	0	1	0	0	0	10374	1174	41	2	25084	2	NEB	2	152553955	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6699	152553955	90645418	787	26474										
STAM2	0	genome.wustl.edu	37	chr2	152980437	152980437	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagtttccaccatgtgattGaactggatatgtctattaat	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152980437	152980437	G	T	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	missense	c.1192	p.Q398K	0.997	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	176	0	0	113	19	14.39	-	-	-	T	152980437	G	T	152980437	3	4	275	1	0	0	0	0	1	0	0	0	15340	1299	45	2	393	2	STAM2	2	152980437	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	426482	152980437	90218936	788	26475										
STAM2	0	genome.wustl.edu	37	chr2	152989949	152989949	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggctcaggctctgatttCttaatttcctccacatcatc	5	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	152989949	152989949	C	A	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	missense	c.849	p.K283N	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	292	0	0	196	37	15.88	-	-	-	A	152989949	C	A	152989949	3	1	275	1	0	0	0	0	1	0	0	0	15340	912	32	2	752	2	STAM2	2	152989949	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9512	152989949	90209424	789	26476										
FMNL2	0	genome.wustl.edu	37	chr2	153471390	153471390	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaacacactgagagtgacaAgcttcaagtccagatccagg	10	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	153471390	153471390	A	C	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	missense	c.1088	p.K363T	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	175	0	0	141	20	12.42	-	-	-	C	153471390	A	C	153471390	3	2	275	1	0	0	0	0	1	0	0	0	5998	72	3	5	1134	5	FMNL2	2	153471390	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	481441	153471390	89727983	790	26477										
FMNL2	0	genome.wustl.edu	37	chr2	153475400	153475400	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactcaagttcacacattaaGaaaaatggtcaaagaaaaag	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	153475400	153475400	G	T	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	missense	c.1355	p.R452I	1.000	pfam_Drf_FH3	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	58	0	0	51	16	23.88	-	-	-	T	153475400	G	T	153475400	3	4	275	1	0	0	0	0	1	0	0	0	5998	942	33	2	1409	2	FMNL2	2	153475400	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4010	153475400	89723973	791	26478										
GALNT13	0	genome.wustl.edu	37	chr2	155099312	155099312	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttaatacgtgcccgtcttCgaggagcagctgcttcaaaa	11	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	155099312	155099312	C	T	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	nonsense	c.580	p.R194*	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	130	0	0	59	18	22.78	-	-	-	T	155099312	C	T	155099312	4	4	275	1	0	0	0	0	0	1	0	0	6261	876	31	1	594	1	GALNT13	2	155099312	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1623912	155099312	88100061	792	26479										
GALNT13	0	genome.wustl.edu	37	chr2	155099346	155099347	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaaagggcaggtcataacINSttttcttgatgcacactgtg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	155099346	155099347	-	T	INS	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	frame_shift_ins	c.614_615	p.L207fs	1.000:1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	162	0	0	81	24	22.86	-	-	-	T	155099347	-	T	155099346	7	5	275	1	0	1	1	0	0	0	0	0	6261	565	20	0	628	0	GALNT13	2	155099346	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	34	155099346	88100027	793	26480										
ERMN	0	genome.wustl.edu	37	chr2	158181185	158181185	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgtagttcttgttaccttCtctgaatgtcatttcatcag	6	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	158181185	158181185	C	A	SNP	ERMN	ENST00000397283	human	ensembl	69_37n	-1	known	nonsense	c.370	p.E124*	0.999	NULL	superfamily_Moesin	-	no_errors	ERMN	HGNC	ENSG00000136541	262	0	0	183	29	13.68	-	-	-	A	158181185	C	A	158181185	4	1	275	1	0	0	0	0	0	1	0	0	5272	922	32	2	531	2	ERMN	2	158181185	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3081839	158181185	85018188	794	26481										
UPP2	0	genome.wustl.edu	37	chr2	158991550	158991550	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatccttctctcttaaaaaGgaatttattgtaaaagaata	4	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	158991550	158991550	G	T	SNP	UPP2	ENST00000460456	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.151	-	-	-	no_errors	UPP2	HGNC	ENSG00000007001	47	0	0	22	6	21.43	-	-	-	T	158991550	G	T	158991550	1	4	275	0	1	0	0	0	0	0	0	0	17110	1015	35	4		4	UPP2	2	158991550	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	810365	158991550	84207823	795	26482										
CCDC148	0	genome.wustl.edu	37	chr2	159028732	159028732	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctatgaagtccagcttctcGaagtgctaactcgaagcgaa	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	159028732	159028732	G	A	SNP	CCDC148	ENST00000283233	human	ensembl	69_37n	-1	known	nonsense	c.1669	p.R557*	0.998	NULL	NULL	-	no_errors	CCDC148	HGNC	ENSG00000153237	323	1	0.31	153	21	12.07	-	-	-	A	159028732	G	A	159028732	4	1	275	1	0	0	0	0	0	1	0	0	2807	1066	37	1	110	1	CCDC148	2	159028732	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	37182	159028732	84170641	796	26483										
PKP4	0	genome.wustl.edu	37	chr2	159477851	159477851	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacgtgagcaaggcagacaAcagacagcagcattcattca	10	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	159477851	159477851	A	T	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.521	p.N174I	0.573	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	265	0	0	202	28	12.12	-	-	-	T	159477851	A	T	159477851	3	4	275	1	0	0	0	0	1	0	0	0	12061	43	2	5	539	5	PKP4	2	159477851	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	449119	159477851	83721522	797	26484										
PKP4	0	genome.wustl.edu	37	chr2	159526290	159526290	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcggcaatggccccagtgtCttgtctgatgagaccatggc	14	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	159526290	159526290	C	T	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	silent	c.2787	p.V929	0.191	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	54	0	0	31	9	22.5	-	-	-	T	159526290	C	T	159526290	2	4	275	1	0	0	0	0	0	0	0	1	12061	900	32	2		2	PKP4	2	159526290	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48439	159526290	83673083	798	26485										
PKP4	0	genome.wustl.edu	37	chr2	159533298	159533298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttaggaatcagagaccctCgctctgaatacgataggacc	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	159533298	159533298	C	T	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.3175	p.R1059C	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	230	0	0	151	28	15.56	-	-	-	T	159533298	C	T	159533298	3	4	275	1	0	0	0	0	1	0	0	0	12061	884	31	1	3249	1	PKP4	2	159533298	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7008	159533298	83666075	799	26486										
DAPL1	0	genome.wustl.edu	37	chr2	159672276	159672276	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaaacccacacctgctctGgaaaaggttgttccactgaa	7	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	159672276	159672276	G	T	SNP	DAPL1	ENST00000309950	human	ensembl	69_37n	1	known	silent	c.267	p.L89	1.000	NULL	NULL	-	no_errors	DAPL1	HGNC	ENSG00000163331	197	0	0	194	23	10.6	-	-	-	T	159672276	G	T	159672276	2	4	275	1	0	0	0	0	0	0	0	1	4270	1335	47	4		4	DAPL1	2	159672276	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	138978	159672276	83527097	800	26487										
TANC1	0	genome.wustl.edu	37	chr2	160005675	160005675	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaaggccgataatgaaccGagctgttcgccggcagctca	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160005675	160005675	G	A	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.387	p.P129	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	317	0	0	227	41	15.3	-	-	-	A	160005675	G	A	160005675	2	1	275	1	0	0	0	0	0	0	0	1	15636	1045	37	1		1	TANC1	2	160005675	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	333399	160005675	83193698	801	26488										
BAZ2B	0	genome.wustl.edu	37	chr2	160261563	160261563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggcttctttagcaacccGagcctgttcctgcttttgaa	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160261563	160261563	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.2740	p.R914W	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	372	2	0.53	185	50	21.1	-	-	-	A	160261563	G	A	160261563	3	1	275	1	0	0	0	0	1	0	0	0	1336	1057	37	1	3858	1	BAZ2B	2	160261563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	255888	160261563	82937810	802	26489										
BAZ2B	0	genome.wustl.edu	37	chr2	160304846	160304846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggggagcaaatagtggtgGaattcccagtaatggtggaa	16	4	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160304846	160304846	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.409	p.P137S	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	488	1	0.2	336	129	27.62	-	-	-	A	160304846	G	A	160304846	3	1	275	1	0	0	0	0	1	0	0	0	1336	1174	41	2	6229	2	BAZ2B	2	160304846	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43283	160304846	82894527	803	26490										
LY75	0	genome.wustl.edu	37	chr2	160706652	160706652	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcaaggatgtaataaagtCtgttagaaagagatttttaa	9	2	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160706652	160706652	C	A	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	splice_site	c.2990-1	e23-1	1.000	-	-	-	no_errors	LY75	HGNC	ENSG00000054219	243	0	0	170	24	12.37	-	-	-	A	160706652	C	A	160706652	5	1	275	1	0	0	0	0	0	0	1	0	9166	927	32	2	2231	2	LY75	2	160706652	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	401806	160706652	82492721	804	26491										
PLA2R1	0	genome.wustl.edu	37	chr2	160803986	160803986	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatactgtctaggactgtaGaaaaactgtagcaattactt	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160803986	160803986	G	T	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.3794	p.S1265Y	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	301	1	0.33	170	58	25.44	-	-	-	T	160803986	G	T	160803986	3	4	275	1	0	0	0	0	1	0	0	0	12084	942	33	2	625	2	PLA2R1	2	160803986	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	97334	160803986	82395387	805	26492										
PLA2R1	0	genome.wustl.edu	37	chr2	160873189	160873189	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttacaaatgtaaaaaagtCtttcttcacaatttttgact	3	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	160873189	160873189	C	A	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.1487	p.R496I	0.242	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	332	1	0.3	278	33	10.58	-	-	-	A	160873189	C	A	160873189	3	1	275	1	0	0	0	0	1	0	0	0	12084	913	32	2	3000	2	PLA2R1	2	160873189	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69203	160873189	82326184	806	26493										
SLC4A10	0	genome.wustl.edu	37	chr2	162760596	162760596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatgctttcagcctgcagTgcttagcatcttttctattt	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	162760596	162760596	T	C	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	missense	c.1525	p.C509R	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	181	0	0	122	43	26.06	-	-	-	C	162760596	T	C	162760596	3	2	275	1	0	0	0	0	1	0	0	0	14740	1696	59	5	1660	5	SLC4A10	2	162760596	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1887407	162760596	80438777	807	26494										
KCNH7	0	genome.wustl.edu	37	chr2	163693210	163693210	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaaccagtcatctcacaGaacccatcgttgcaataaat	6	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	163693210	163693210	G	T	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	missense	c.144	p.F48L	1.000	pfam_PAS_fold_3,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	118	0	0	71	16	18.39	-	-	-	T	163693210	G	T	163693210	3	4	275	1	0	0	0	0	1	0	0	0	8091	933	33	2	3572	2	KCNH7	2	163693210	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	932614	163693210	79506163	808	26495										
COBLL1	0	genome.wustl.edu	37	chr2	165551376	165551376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatattgtttatttcttcCaaatttggtgcaaaaggagc	7	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	165551376	165551376	C	A	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.2841	p.L947F	0.746	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	94	0	0	88	11	11.11	-	-	-	A	165551376	C	A	165551376	3	1	275	1	0	0	0	0	1	0	0	0	3684	593	21	4	872	4	COBLL1	2	165551376	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1858166	165551376	77647997	809	26496										
COBLL1	0	genome.wustl.edu	37	chr2	165551966	165551966	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttacagaatcttgtgaacTtaagcatgagtgttgagttg	10	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	165551966	165551966	T	G	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.2251	p.S751R	0.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	241	0	0	205	40	16.33	-	-	-	G	165551966	T	G	165551966	3	3	275	1	0	0	0	0	1	0	0	0	3684	1609	56	5	1462	5	COBLL1	2	165551966	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	590	165551966	77647407	810	26497										
SLC38A11	0	genome.wustl.edu	37	chr2	165802118	165802118	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttacctataaaaggatacaAaaactgaagaacagagagga	8	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	165802118	165802118	A	C	SNP	SLC38A11	ENST00000409149	human	ensembl	69_37n	-1	known	missense	c.181	p.L61V	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A11	HGNC	ENSG00000169507	346	0	0	184	64	25.81	-	-	-	C	165802118	A	C	165802118	3	2	275	1	0	0	0	0	1	0	0	0	14692	11	1	5	1005	5	SLC38A11	2	165802118	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	250152	165802118	77397255	811	26498										
SCN2A	0	genome.wustl.edu	37	chr2	166165719	166165719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcaatgtttcagctcttcGaactttcagagtcttgagag	10	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166165719	166165719	G	A	SNP	SCN2A	ENST00000357398	human	ensembl	69_37n	1	known	missense	c.650	p.R217Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	411	0	0	213	70	24.73	-	-	-	A	166165719	G	A	166165719	3	1	275	1	0	0	0	0	1	0	0	0	14004	1058	37	1	668	1	SCN2A	2	166165719	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	363601	166165719	77033654	812	26499										
SCN2A	0	genome.wustl.edu	37	chr2	166165920	166165920	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgttgagaacattcagagttCtccgagcattgaaaacaatt	8	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166165920	166165920	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.664	p.L222I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	335	0	0	205	76	27.05	-	-	-	A	166165920	C	A	166165920	3	1	275	1	0	0	0	0	1	0	0	0	14004	913	32	2	778	2	SCN2A	2	166165920	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	201	166165920	77033453	813	26500										
SCN2A	0	genome.wustl.edu	37	chr2	166166992	166166992	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaatggcctccagataattCttcctttgaaataaatatca	5	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166166992	166166992	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.857	p.S286Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	500	0	0	257	59	18.67	-	-	-	A	166166992	C	A	166166992	3	1	275	1	0	0	0	0	1	0	0	0	14004	913	32	2	975	2	SCN2A	2	166166992	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1072	166166992	77032381	814	26501										
SCN2A	0	genome.wustl.edu	37	chr2	166210776	166210776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgccactgatgatgataaCgaaatgaataatctccagat	8	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166210776	166210776	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	silent	c.2994	p.N998	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	178	0	0	111	25	18.38	-	-	-	T	166210776	C	T	166210776	2	4	275	1	0	0	0	0	0	0	0	1	14004	535	19	1		1	SCN2A	2	166210776	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43784	166210776	76988597	815	26502										
SCN2A	0	genome.wustl.edu	37	chr2	166243460	166243460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgaaactgatctctcttCgttactactatttcactatt	4	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166243460	166243460	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.4756	p.R1586C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	1364	1	0.07	670	98	12.74	-	-	-	T	166243460	C	T	166243460	3	4	275	1	0	0	0	0	1	0	0	0	14004	884	31	1	4950	1	SCN2A	2	166243460	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32684	166243460	76955913	816	26503										
TTC21B	0	genome.wustl.edu	37	chr2	166737195	166737195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgccaaactcacctactgCcggatttgtccgattgctat	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166737195	166737195	C	T	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	missense	c.3799	p.A1267T	0.804	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	295	0	0	198	25	11.21	-	-	-	T	166737195	C	T	166737195	3	4	275	1	0	0	0	0	1	0	0	0	16785	739	26	4	163	4	TTC21B	2	166737195	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	493735	166737195	76462178	817	26504										
SCN1A	0	genome.wustl.edu	37	chr2	166848159	166848159	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctctccactctctcctaGaacccgctttgtaaaagcaa	4	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166848159	166848159	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.5626	p.L1876I	0.915	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	154	0	0	119	43	26.38	-	-	-	T	166848159	G	T	166848159	3	4	275	1	0	0	0	0	1	0	0	0	14002	933	33	2	407	2	SCN1A	2	166848159	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	110964	166848159	76351214	818	26505										
SCN1A	0	genome.wustl.edu	37	chr2	166892889	166892889	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgaaggactgttgaataAattcatatatttttcttttc	5	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166892889	166892889	A	C	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.3098	p.F1033C	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	105	0	0	61	18	22.78	-	-	-	C	166892889	A	C	166892889	3	2	275	1	0	0	0	0	1	0	0	0	14002	14	1	5	2975	5	SCN1A	2	166892889	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	44730	166892889	76306484	819	26506										
SCN1A	0	genome.wustl.edu	37	chr2	166894582	166894582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagcccccacggaattgcCgatgatctttattagcatat	8	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	166894582	166894582	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.2650	p.G884S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	154	1	0.65	108	16	12.9	-	-	-	T	166894582	C	T	166894582	3	4	275	1	0	0	0	0	1	0	0	0	14002	652	23	1	3427	1	SCN1A	2	166894582	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1693	166894582	76304791	820	26507										
SCN9A	0	genome.wustl.edu	37	chr2	167055613	167055613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacccaaaacacgctttgTaaaagcaaataagatgtcaa	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	167055613	167055613	T	C	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.5539	p.T1847A	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	189	0	0	121	14	10.37	-	-	-	C	167055613	T	C	167055613	3	2	275	1	0	0	0	0	1	0	0	0	14013	1638	57	5	434	5	SCN9A	2	167055613	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	161031	167055613	76143760	821	26508										
SCN9A	0	genome.wustl.edu	37	chr2	167162345	167162345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccagttccacgggtcacGaagaaaagtgaattctccta	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	167162345	167162345	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.556	p.R186C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	150	1	0.66	128	20	13.51	-	-	-	A	167162345	G	A	167162345	3	1	275	1	0	0	0	0	1	0	0	0	14013	1058	37	1	5472	1	SCN9A	2	167162345	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106732	167162345	76037028	822	26509										
XIRP2	0	genome.wustl.edu	37	chr2	167760060	167760060	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatcttgtgattatcagaGaagtgagtgtcatcccaggg	13	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	167760060	167760060	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.68	p.R23I	0.720	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	95	0	0	65	14	17.72	-	-	-	T	167760060	G	T	167760060	3	4	275	1	0	0	0	0	1	0	0	0	17527	942	33	2	70	2	XIRP2	2	167760060	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	597715	167760060	75439313	823	26510										
XIRP2	0	genome.wustl.edu	37	chr2	168100929	168100929	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagtccagcaagaagaaatCgtaagaggtgatgtaagaag	12	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168100929	168100929	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.3027	p.I1009	0.225	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	141	0	0	61	23	27.38	-	-	-	T	168100929	C	T	168100929	2	4	275	1	0	0	0	0	0	0	0	1	17527	874	31	1		1	XIRP2	2	168100929	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	340869	168100929	75098444	824	26511										
XIRP2	0	genome.wustl.edu	37	chr2	168101260	168101260	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccagcagtgaagaaattCataagggagatgtcaaaact	10	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168101260	168101260	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.3358	p.H1120N	0.998	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	174	0	0	97	32	24.81	-	-	-	A	168101260	C	A	168101260	3	1	275	1	0	0	0	0	1	0	0	0	17527	826	29	2	3388	2	XIRP2	2	168101260	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	331	168101260	75098113	825	26512										
XIRP2	0	genome.wustl.edu	37	chr2	168101984	168101984	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaacaaagccattagactCtattaataaatcagaaactg	5	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168101984	168101984	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.4082	p.S1361Y	0.995	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	147	0	0	117	30	20.41	-	-	-	A	168101984	C	A	168101984	3	1	275	1	0	0	0	0	1	0	0	0	17527	913	32	2	4112	2	XIRP2	2	168101984	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	724	168101984	75097389	826	26513										
XIRP2	0	genome.wustl.edu	37	chr2	168103495	168103495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaaaacagaagaaattataAaaggtaacatgctagccaca	7	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168103495	168103495	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.5593	p.K1865Q	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	165	0	0	114	25	17.99	-	-	-	C	168103495	A	C	168103495	3	2	275	1	0	0	0	0	1	0	0	0	17527	15	1	5	5623	5	XIRP2	2	168103495	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1511	168103495	75095878	827	26514										
XIRP2	0	genome.wustl.edu	37	chr2	168103710	168103710	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagaagcacaaagaagtttCaaagaggtacataaagaagg	10	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168103710	168103710	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.5808	p.F1936	0.974	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	240	0	0	143	22	13.25	-	-	-	T	168103710	C	T	168103710	2	4	275	1	0	0	0	0	0	0	0	1	17527	825	29	2		2	XIRP2	2	168103710	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	215	168103710	75095663	828	26515										
XIRP2	0	genome.wustl.edu	37	chr2	168107319	168107319	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagaaaaccctactaagaaCgagctttctcagtcccctaa	5	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	168107319	168107319	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.9417	p.N3139	0.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	152	0	0	85	11	11.46	-	-	-	T	168107319	C	T	168107319	2	4	275	1	0	0	0	0	0	0	0	1	17527	535	19	1		1	XIRP2	2	168107319	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3609	168107319	75092054	829	26516										
ABCB11	0	genome.wustl.edu	37	chr2	169826690	169826690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttctggccaccactcatCtggcctcctccttctccaac	5	18	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	169826690	169826690	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.1674	p.Q558H	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	211	0	0	158	20	11.24	-	-	-	A	169826690	C	A	169826690	3	1	275	1	0	0	0	0	1	0	0	0	42	912	32	2	2347	2	ABCB11	2	169826690	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1719371	169826690	73372683	830	26517										
ABCB11	0	genome.wustl.edu	37	chr2	169847321	169847321	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attaaccaacctttcaacctCtcttttctcaccaccaaaag	1	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	169847321	169847321	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.898	p.E300*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	196	0	0	139	20	12.58	-	-	-	A	169847321	C	A	169847321	4	1	275	1	0	0	0	0	0	1	0	0	42	922	32	2	3147	2	ABCB11	2	169847321	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20631	169847321	73352052	831	26518										
LRP2	0	genome.wustl.edu	37	chr2	170025080	170025080	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttcttcatctgaaccatcGccacagtcatcatcgccatc	5	15	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170025080	170025080	G	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.11604	p.G3868	0.885	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	372	0	0	194	72	26.97	-	-	-	A	170025080	G	A	170025080	2	1	275	1	0	0	0	0	0	0	0	1	9022	1074	38	1		1	LRP2	2	170025080	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	177759	170025080	73174293	832	26519										
LRP2	0	genome.wustl.edu	37	chr2	170092352	170092352	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcaccaccaacttaccaAatcactggctatcacctgtc	3	17	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170092352	170092352	A	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.4918	p.L1640	0.999	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	350	0	0	200	81	28.83	-	-	-	G	170092352	A	G	170092352	2	3	275	1	0	0	0	0	0	0	0	1	9022	11	1	5		5	LRP2	2	170092352	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	67272	170092352	73107021	833	26520										
LRP2	0	genome.wustl.edu	37	chr2	170136891	170136891	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggtgtctgtccaaaaaactCtttgcaggtgatagtggaaa	11	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170136891	170136891	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1310	p.R437I	0.439	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	175	0	0	67	13	16.25	-	-	-	A	170136891	C	A	170136891	3	1	275	1	0	0	0	0	1	0	0	0	9022	913	32	2	12933	2	LRP2	2	170136891	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44539	170136891	73062482	834	26521										
KBTBD10	0	genome.wustl.edu	37	chr2	170377483	170377483	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattcaactggagtctaaaGaatttgcacccactgaagtc	8	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170377483	170377483	G	T	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	nonsense	c.1675	p.E559*	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	553	0	0	421	47	10.04	-	-	-	T	170377483	G	T	170377483	4	4	275	1	0	0	0	0	0	1	0	0	8044	943	33	2	1693	2	KBTBD10	2	170377483	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	240592	170377483	72821890	835	26522										
FASTKD1	0	genome.wustl.edu	37	chr2	170416902	170416902	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaactgaacttactgtttCttttcttcaggtcctgcaat	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170416902	170416902	C	A	SNP	FASTKD1	ENST00000453153	human	ensembl	69_37n	-1	known	missense	c.966	p.K322N	0.999	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399	54	0	0	35	7	16.67	-	-	-	A	170416902	C	A	170416902	3	1	275	1	0	0	0	0	1	0	0	0	5731	912	32	2	1621	2	FASTKD1	2	170416902	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39419	170416902	72782471	836	26523										
SSB	0	genome.wustl.edu	37	chr2	170666792	170666792	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcactttgtatatttttataGaaatctctagaagaaaagat	5	4	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170666792	170666792	G	T	SNP	SSB	ENST00000260956	human	ensembl	69_37n	1	known	splice_site	c.670-1	e8-1	1.000	-	-	-	no_errors	SSB	HGNC	ENSG00000138385	65	0	0	49	7	12.5	-	-	-	T	170666792	G	T	170666792	5	4	275	1	0	0	0	0	0	0	1	0	15269	956	33	2	699	2	SSB	2	170666792	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	249890	170666792	72532581	837	26524										
UBR3	0	genome.wustl.edu	37	chr2	170806214	170806214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaagcaaatcaggtggttCgtcccaaaacttcaagtaaa	9	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	170806214	170806214	C	T	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.3184	p.R1062C	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	153	0	0	102	37	26.62	-	-	-	T	170806214	C	T	170806214	3	4	275	1	0	0	0	0	1	0	0	0	17000	884	31	1	3274	1	UBR3	2	170806214	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	139422	170806214	72393159	838	26525										
TLK1	0	genome.wustl.edu	37	chr2	171906626	171906626	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcacttatttaatcgttctTtgtatttttcaagtaatttt	4	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	171906626	171906626	T	G	SNP	TLK1	ENST00000431350	human	ensembl	69_37n	-1	known	missense	c.791	p.K264T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK1	HGNC	ENSG00000198586	601	0	0	278	125	30.94	-	-	-	G	171906626	T	G	171906626	3	3	275	1	0	0	0	0	1	0	0	0	16038	1841	64	5	1561	5	TLK1	2	171906626	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1100412	171906626	71292747	839	26526										
TLK1	0	genome.wustl.edu	37	chr2	171939347	171939347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaactgtgattagagctttCgttatttgttgaggcctgtt	10	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	171939347	171939347	C	T	SNP	TLK1	ENST00000431350	human	ensembl	69_37n	-1	known	missense	c.274	p.E92K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK1	HGNC	ENSG00000198586	396	0	0	256	37	12.63	-	-	-	T	171939347	C	T	171939347	3	4	275	1	0	0	0	0	1	0	0	0	16038	893	31	1	2148	1	TLK1	2	171939347	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32721	171939347	71260026	840	26527										
PDK1	0	genome.wustl.edu	37	chr2	173431637	173431637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtattatattaactctcccGaactagaacttgaagaacta	5	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	173431637	173431637	G	A	SNP	PDK1	ENST00000282077	human	ensembl	69_37n	1	known	missense	c.745	p.E249K	1.000	superfamily_ATPase-like_ATP-bd	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256	439	0	0	258	35	11.95	-	-	-	A	173431637	G	A	173431637	3	1	275	1	0	0	0	0	1	0	0	0	11748	1059	37	1	767	1	PDK1	2	173431637	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1492290	173431637	69767736	841	26528										
RAPGEF4	0	genome.wustl.edu	37	chr2	173662285	173662285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatattggaacaaactggTatgctgtcctggcagggtct	13	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	173662285	173662285	T	C	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	missense	c.241	p.Y81H	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	390	0	0	246	38	13.33	-	-	-	C	173662285	T	C	173662285	3	2	275	1	0	0	0	0	1	0	0	0	13129	1638	57	5	251	5	RAPGEF4	2	173662285	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	230648	173662285	69537088	842	26529										
CDCA7	0	genome.wustl.edu	37	chr2	174224139	174224139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggccagatgtcactaacGaactggccggtatttttcat	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	174224139	174224139	G	A	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	119	0	0	88	20	18.52	-	-	-	A	174224139	G	A	174224139	3	1	275	1	0	0	0	0	1	0	0	0	3119	1059	37	1	314	1	CDCA7	2	174224139	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	561854	174224139	68975234	843	26530										
SCRN3	0	genome.wustl.edu	37	chr2	175263038	175263038	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttttcctgtgacactttCgtggcattacctccagcaac	6	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	175263038	175263038	C	T	SNP	SCRN3	ENST00000272732	human	ensembl	69_37n	1	known	silent	c.27	p.F9	0.983	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	186	1	0.53	64	29	31.18	-	-	-	T	175263038	C	T	175263038	2	4	275	1	0	0	0	0	0	0	0	1	14028	883	31	1		1	SCRN3	2	175263038	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1038899	175263038	67936335	844	26531										
CHN1	0	genome.wustl.edu	37	chr2	175664997	175664997	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgcattcataagattctcCttttcgtggagggtcactct	8	10	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	175664997	175664997	C	A	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	missense	c.1227	p.K409N	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	154	0	0	133	24	15.29	-	-	-	A	175664997	C	A	175664997	3	1	275	1	0	0	0	0	1	0	0	0	3391	680	24	4	156	4	CHN1	2	175664997	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	401959	175664997	67534376	845	26532										
ATF2	0	genome.wustl.edu	37	chr2	175983072	175983072	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttcttcacagtttttcaaGaatcttgttggtgttggggt	10	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	175983072	175983072	G	T	SNP	ATF2	ENST00000264110	human	ensembl	69_37n	-1	known	missense	c.225	p.F75L	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF2	HGNC	ENSG00000115966	738	0	0	333	114	25.45	-	-	-	T	175983072	G	T	175983072	3	4	275	1	0	0	0	0	1	0	0	0	1084	933	33	2	1328	2	ATF2	2	175983072	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	318075	175983072	67216301	846	26533										
TTC30B	0	genome.wustl.edu	37	chr2	178416235	178416235	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggaatgtatttctccatGgtttcatcatattcattcac	5	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	178416235	178416235	G	T	SNP	TTC30B	ENST00000408939	human	ensembl	69_37n	-1	known	silent	c.1257	p.T419	0.444	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659	306	0	0	195	49	20	-	-	-	T	178416235	G	T	178416235	2	4	275	1	0	0	0	0	0	0	0	1	16796	1335	47	4		4	TTC30B	2	178416235	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2433163	178416235	64783138	847	26534										
PDE11A	0	genome.wustl.edu	37	chr2	178936539	178936539	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcattggagatatctttgAccaattccagaaagaactga	9	7	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	178936539	178936539	A	C	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.626	p.V209G	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	119	0	0	87	10	10.31	-	-	-	C	178936539	A	C	178936539	3	2	275	1	0	0	0	0	1	0	0	0	11704	275	10	5	2255	5	PDE11A	2	178936539	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	520304	178936539	64262834	848	26535										
RBM45	0	genome.wustl.edu	37	chr2	178988302	178988302	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctatttatgcaaaatacAaattacatggatttcagtac	5	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	178988302	178988302	A	T	SNP	RBM45	ENST00000286070	human	ensembl	69_37n	1	known	nonsense	c.907	p.K303*	1.000	smart_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636	78	0	0	86	21	19.63	-	-	-	T	178988302	A	T	178988302	4	4	275	1	0	0	0	0	0	1	0	0	13222	131	5	5	929	5	RBM45	2	178988302	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	51763	178988302	64211071	849	26536										
OSBPL6	0	genome.wustl.edu	37	chr2	179238674	179238674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaagtagccaatgagagcCgcctctccatgtcagagtct	10	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179238674	179238674	C	T	SNP	OSBPL6	ENST00000315022	human	ensembl	69_37n	1	known	missense	c.1465	p.R489C	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156	225	0	0	176	23	11.56	-	-	-	T	179238674	C	T	179238674	3	4	275	1	0	0	0	0	1	0	0	0	11354	652	23	1	1625	1	OSBPL6	2	179238674	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	250372	179238674	63960699	850	26537										
TTN	0	genome.wustl.edu	37	chr2	179393747	179393747	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggaggttgctgctgatttCttgacttcttcagaaatcag	11	7	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179393747	179393747	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.99027	p.K33009	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	301	0	0	142	46	24.47	-	-	-	T	179393747	C	T	179393747	2	4	275	1	0	0	0	0	0	0	0	1	16832	912	32	2		2	TTN	2	179393747	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155073	179393747	63805626	851	26538										
TTN	0	genome.wustl.edu	37	chr2	179394814	179394814	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccctcccttgtcttcagaGagtttatatttacctccttg	5	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179394814	179394814	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.98700	p.L32900	0.998	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	371	0	0	197	26	11.66	-	-	-	T	179394814	G	T	179394814	2	4	275	1	0	0	0	0	0	0	0	1	16832	929	33	2		2	TTN	2	179394814	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1067	179394814	63804559	852	26539										
TTN	0	genome.wustl.edu	37	chr2	179406267	179406267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaagtgtcatgccatcacGggaaacatcaaatatctgta	8	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179406267	179406267	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.89833	p.R29945C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	216	0	0	119	31	20.53	-	-	-	A	179406267	G	A	179406267	3	1	275	1	0	0	0	0	1	0	0	0	16832	1116	39	1	10494	1	TTN	2	179406267	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11453	179406267	63793106	853	26540										
TTN	0	genome.wustl.edu	37	chr2	179414585	179414585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttattggcccaactacttTtcctggtgtatctataagaa	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179414585	179414585	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.84160	p.K28054Q	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	170	0	0	85	15	15	-	-	-	G	179414585	T	G	179414585	3	3	275	1	0	0	0	0	1	0	0	0	16832	1850	64	5	16215	5	TTN	2	179414585	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	8318	179414585	63784788	854	26541										
TTN	0	genome.wustl.edu	37	chr2	179425491	179425491	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggccatttatttcaagtggTcctgctggtggaccaggctt	12	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179425491	179425491	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.77664	p.G25888	0.990	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	52	0	0	34	5	12.82	-	-	-	A	179425491	T	A	179425491	2	1	275	1	0	0	0	0	0	0	0	1	16832	1654	58	5		5	TTN	2	179425491	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	10906	179425491	63773882	855	26542										
TTN	0	genome.wustl.edu	37	chr2	179435051	179435051	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtatattcattgccttcaaGaagcttagtaaccttgcagc	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179435051	179435051	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.68104	p.L22702I	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	111	0	0	72	12	14.29	-	-	-	T	179435051	G	T	179435051	3	4	275	1	0	0	0	0	1	0	0	0	16832	942	33	2	32319	2	TTN	2	179435051	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9560	179435051	63764322	856	26543										
TTN	0	genome.wustl.edu	37	chr2	179442351	179442351	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattcatccttgcaaataatGgtttctgtactttctgatgg	7	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179442351	179442351	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.61098	p.T20366	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	204	0	0	140	34	19.54	-	-	-	T	179442351	G	T	179442351	2	4	275	1	0	0	0	0	0	0	0	1	16832	1335	47	4		4	TTN	2	179442351	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7300	179442351	63757022	857	26544										
TTN	0	genome.wustl.edu	37	chr2	179443561	179443561	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctcgcaacaattggctcCgatttcaggccttcccctac	7	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179443561	179443561	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.60492	p.S20164	0.206	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	84	0	0	62	8	11.43	-	-	-	T	179443561	C	T	179443561	2	4	275	1	0	0	0	0	0	0	0	1	16832	639	23	1		1	TTN	2	179443561	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1210	179443561	63755812	858	26545										
TTN	0	genome.wustl.edu	37	chr2	179445322	179445322	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttaagtccgcatcaagttCtccctcaggtggaactgttt	8	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179445322	179445322	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.59080	p.E19694*	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	113	0	0	75	13	14.77	-	-	-	A	179445322	C	A	179445322	4	1	275	1	0	0	0	0	0	1	0	0	16832	922	32	2	41379	2	TTN	2	179445322	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1761	179445322	63754051	859	26546										
TTN	0	genome.wustl.edu	37	chr2	179446918	179446918	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgctaataacaggaggatCacagcgtcctggtgggtctg	14	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179446918	179446918	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.58474	p.D19492Y	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	90	0	0	44	20	31.25	-	-	-	A	179446918	C	A	179446918	3	1	275	1	0	0	0	0	1	0	0	0	16832	826	29	2	41993	2	TTN	2	179446918	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1596	179446918	63752455	860	26547										
TTN	0	genome.wustl.edu	37	chr2	179455705	179455705	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaccaacacctatcttattCtctgctctaactcggaaaac	5	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179455705	179455705	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.53043	p.E17681D	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	79	0	0	53	9	14.52	-	-	-	A	179455705	C	A	179455705	3	1	275	1	0	0	0	0	1	0	0	0	16832	912	32	2	47468	2	TTN	2	179455705	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8787	179455705	63743668	861	26548										
TTN	0	genome.wustl.edu	37	chr2	179458301	179458301	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacataatgcatactgaaacGatctttggctttcattgaat	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179458301	179458301	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.51022	p.R17008C	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	106	0	0	80	13	13.98	-	-	-	A	179458301	G	A	179458301	3	1	275	1	0	0	0	0	1	0	0	0	16832	1058	37	1	49513	1	TTN	2	179458301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2596	179458301	63741072	862	26549										
TTN	0	genome.wustl.edu	37	chr2	179466070	179466070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggttttctgctcgcacacGgaagaaatattgctgttcag	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179466070	179466070	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47950	p.R15984C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	393	0	0	201	68	25.28	-	-	-	A	179466070	G	A	179466070	3	1	275	1	0	0	0	0	1	0	0	0	16832	1116	39	1	52343	1	TTN	2	179466070	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7769	179466070	63733303	863	26550										
TTN	0	genome.wustl.edu	37	chr2	179477578	179477578	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttattcacagctctaactcGgaatgagtattcctgtcctt	6	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179477578	179477578	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.42166	p.R14056	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	125	0	0	60	15	20	-	-	-	T	179477578	G	T	179477578	2	4	275	1	0	0	0	0	0	0	0	1	16832	1124	39	3		3	TTN	2	179477578	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11508	179477578	63721795	864	26551										
TTN	0	genome.wustl.edu	37	chr2	179480434	179480434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccagggccacatttgttacGagcacaaactttaaataagt	7	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179480434	179480434	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.40690	p.R13564C	0.991	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	262	0	0	181	51	21.98	-	-	-	A	179480434	G	A	179480434	3	1	275	1	0	0	0	0	1	0	0	0	16832	1058	37	1	59719	1	TTN	2	179480434	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2856	179480434	63718939	865	26552										
TTN	0	genome.wustl.edu	37	chr2	179485078	179485078	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgttccacaaattctgtCggggcttctatgatgagaag	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179485078	179485078	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.38466	p.P12822	0.761	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	191	0	0	97	18	15.65	-	-	-	T	179485078	C	T	179485078	2	4	275	1	0	0	0	0	0	0	0	1	16832	871	31	1		1	TTN	2	179485078	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4644	179485078	63714295	866	26553										
TTN	0	genome.wustl.edu	37	chr2	179485343	179485343	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaggctcaacaatcctaAggtcttcctctgttgtaaag	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179485343	179485343	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.38201	p.L12734R	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	168	0	0	118	21	15.11	-	-	-	C	179485343	A	C	179485343	3	2	275	1	0	0	0	0	1	0	0	0	16832	72	3	5	62248	5	TTN	2	179485343	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	265	179485343	63714030	867	26554										
TTN	0	genome.wustl.edu	37	chr2	179494084	179494084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattccactgggatatcttCgtaggagagctcgcagtcga	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179494084	179494084	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.36664	p.E12222K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	412	0	0	210	29	12.08	-	-	-	T	179494084	C	T	179494084	3	4	275	1	0	0	0	0	1	0	0	0	16832	893	31	1	63817	1	TTN	2	179494084	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8741	179494084	63705289	868	26555										
TTN	0	genome.wustl.edu	37	chr2	179494167	179494167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctcagaagaccaattactCgtgcttttcgagagggaaga	11	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179494167	179494167	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.36581	p.R12194Q	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	262	0	0	127	32	20	-	-	-	T	179494167	C	T	179494167	3	4	275	1	0	0	0	0	1	0	0	0	16832	884	31	1	63900	1	TTN	2	179494167	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83	179494167	63705206	869	26556										
TTN	0	genome.wustl.edu	37	chr2	179545848	179545848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctctttttcacgtttggTaattgaaatacgtatttttt	6	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179545848	179545848	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.29566	p.T9856A	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	285	0	0	225	25	10	-	-	-	C	179545848	T	C	179545848	3	2	275	1	0	0	0	0	1	0	0	0	16832	1638	57	5	71131	5	TTN	2	179545848	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	51681	179545848	63653525	870	26557										
TTN	0	genome.wustl.edu	37	chr2	179557291	179557291	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttcttctggagctggtttCtcaggtagctcagggacttt	11	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179557291	179557291	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.27879	p.E9293D	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	340	0	0	221	73	24.83	-	-	-	A	179557291	C	A	179557291	3	1	275	1	0	0	0	0	1	0	0	0	16832	912	32	2	72890	2	TTN	2	179557291	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11443	179557291	63642082	871	26558										
TTN	0	genome.wustl.edu	37	chr2	179576052	179576052	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacatctctcaattgtcgaGaaaatgatggtggaagtttt	10	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179576052	179576052	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.24179	p.S8060Y	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	126	0	0	84	19	18.45	-	-	-	T	179576052	G	T	179576052	3	4	275	1	0	0	0	0	1	0	0	0	16832	942	33	2	76682	2	TTN	2	179576052	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18761	179576052	63623321	872	26559										
TTN	0	genome.wustl.edu	37	chr2	179579722	179579722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccatctaacctttgagagCgatggaaccaacgcaagtgt	10	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179579722	179579722	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.22459	p.A7487T	0.417	superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	210	0	0	128	47	26.4	-	-	-	T	179579722	C	T	179579722	3	4	275	1	0	0	0	0	1	0	0	0	16832	768	27	1	78430	1	TTN	2	179579722	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3670	179579722	63619651	873	26560										
TTN	0	genome.wustl.edu	37	chr2	179580465	179580465	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcatcctgtttcacaattCttgaaggttctagcttctta	5	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179580465	179580465	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.21944	p.R7315I	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_V-set_subgr,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	133	0	0	88	27	23.48	-	-	-	A	179580465	C	A	179580465	3	1	275	1	0	0	0	0	1	0	0	0	16832	913	32	2	78949	2	TTN	2	179580465	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	743	179580465	63618908	874	26561										
TTN	0	genome.wustl.edu	37	chr2	179580489	179580489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggttctagcttcttaatgAacctgggtggttctatggaa	11	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179580489	179580489	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.21920	p.F7307S	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	121	0	0	75	22	22.68	-	-	-	G	179580489	A	G	179580489	3	3	275	1	0	0	0	0	1	0	0	0	16832	246	9	5	78973	5	TTN	2	179580489	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	24	179580489	63618884	875	26562										
TTN	0	genome.wustl.edu	37	chr2	179582330	179582330	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatactgccctatgtggctcTggtcagtttgtaaaatctga	9	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179582330	179582330	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.21539	p.Q7180P	0.886	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	231	0	0	140	19	11.95	-	-	-	G	179582330	T	G	179582330	3	3	275	1	0	0	0	0	1	0	0	0	16832	1580	55	5	79362	5	TTN	2	179582330	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1841	179582330	63617043	876	26563										
TTN	0	genome.wustl.edu	37	chr2	179584856	179584856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatcctggtattttcactcTctctgatgacttcacctcta	4	12	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179584856	179584856	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.19781	p.E6594G	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	207	0	0	113	48	29.81	-	-	-	C	179584856	T	C	179584856	3	2	275	1	0	0	0	0	1	0	0	0	16832	1551	54	5	81144	5	TTN	2	179584856	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2526	179584856	63614517	877	26564										
TTN	0	genome.wustl.edu	37	chr2	179589084	179589084	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcctttcaactgagagaatCcttaaggaagagattttgtt	9	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179589084	179589084	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.17286	p.R5762	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	123	0	0	102	13	11.21	-	-	-	T	179589084	C	T	179589084	2	4	275	1	0	0	0	0	0	0	0	1	16832	854	30	2		2	TTN	2	179589084	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4228	179589084	63610289	878	26565										
TTN	0	genome.wustl.edu	37	chr2	179593391	179593391	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggaactatttgtttcccgTctttaagccatttcactttg	7	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179593391	179593391	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.15530	p.D5177G	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	248	1	0.4	163	30	15.54	-	-	-	C	179593391	T	C	179593391	3	2	275	1	0	0	0	0	1	0	0	0	16832	1667	58	5	85455	5	TTN	2	179593391	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4307	179593391	63605982	879	26566										
TTN	0	genome.wustl.edu	37	chr2	179596285	179596285	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggagggagctggtactctcGatcttctttatgaaggatgg	14	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179596285	179596285	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.13476	p.I4492	0.017	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	136	0	0	64	23	26.44	-	-	-	A	179596285	G	A	179596285	2	1	275	1	0	0	0	0	0	0	0	1	16832	1048	37	1		1	TTN	2	179596285	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2894	179596285	63603088	880	26567										
TTN	0	genome.wustl.edu	37	chr2	179602934	179602934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagatatactttgaagatCgaatagaacacttgtcactc	8	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179602934	179602934	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.10514	p.R3505Q	0.888	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	178	0	0	115	17	12.88	-	-	-	T	179602934	C	T	179602934	3	4	275	1	0	0	0	0	1	0	0	0	16832	884	31	1	90539	1	TTN	2	179602934	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6649	179602934	63596439	881	26568										
TTN	0	genome.wustl.edu	37	chr2	179611124	179611124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatggtcaggagtaaattCgggaactgtcactattttca	9	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179611124	179611124	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.16003	p.E5335K	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	111	0	0	62	27	30.34	-	-	-	T	179611124	C	T	179611124	3	4	275	1	0	0	0	0	1	0	0	0	16832	893	31	1	94294	1	TTN	2	179611124	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8190	179611124	63588249	882	26569										
TTN	0	genome.wustl.edu	37	chr2	179614269	179614269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaccagctggataatcataAaaatgtgcccttacagattc	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179614269	179614269	A	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.12858	p.F4286L	0.234	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	172	0	0	96	25	20.66	-	-	-	C	179614269	A	C	179614269	3	2	275	1	0	0	0	0	1	0	0	0	16832	11	1	5	97439	5	TTN	2	179614269	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3145	179614269	63585104	883	26570										
TTN	0	genome.wustl.edu	37	chr2	179635334	179635334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacattagggtgtgtaagctCgacagtgaaaacagcatcct	11	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179635334	179635334	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.8185	p.E2729K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	305	0	0	170	53	23.66	-	-	-	T	179635334	C	T	179635334	3	4	275	1	0	0	0	0	1	0	0	0	16832	893	31	1	103115	1	TTN	2	179635334	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21065	179635334	63564039	884	26571										
TTN	0	genome.wustl.edu	37	chr2	179638266	179638266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcgtctgaagcatgagttCggttaatgactagtcgctgt	11	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179638266	179638266	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.7517	p.R2506Q	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	348	1	0.29	184	72	28.02	-	-	-	T	179638266	C	T	179638266	3	4	275	1	0	0	0	0	1	0	0	0	16832	884	31	1	103795	1	TTN	2	179638266	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2932	179638266	63561107	885	26572										
TTN	0	genome.wustl.edu	37	chr2	179639761	179639761	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagaggaagtgaacctttCtgtcagagtgcatcctgtat	12	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179639761	179639761	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6677	p.R2226I	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	327	0	0	241	31	11.4	-	-	-	A	179639761	C	A	179639761	3	1	275	1	0	0	0	0	1	0	0	0	16832	913	32	2	104647	2	TTN	2	179639761	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1495	179639761	63559612	886	26573										
SESTD1	0	genome.wustl.edu	37	chr2	179989132	179989132	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaagagctgcttgtaagaGattttgcctaaattccagct	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	179989132	179989132	G	T	SNP	SESTD1	ENST00000428443	human	ensembl	69_37n	-1	known	missense	c.1126	p.L376I	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231	410	3	0.73	205	80	28.07	-	-	-	T	179989132	G	T	179989132	3	4	275	1	0	0	0	0	1	0	0	0	14215	942	33	2	996	2	SESTD1	2	179989132	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	349371	179989132	63210241	887	26574										
ITGA4	0	genome.wustl.edu	37	chr2	182343604	182343604	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacatatagaatcttaattCttctcatggtttggaagact	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	182343604	182343604	C	A	SNP	ITGA4	ENST00000478440	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ITGA4	HGNC	ENSG00000115232	106	0	0	50	14	21.88	-	-	-	A	182343604	C	A	182343604	1	1	275	0	1	0	0	0	0	0	0	0	7932	928	32	2		2	ITGA4	2	182343604	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2354472	182343604	60855769	888	26575										
CERKL	0	genome.wustl.edu	37	chr2	182403818	182403818	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggtgaaataaatagacttaCctaatatggacctctgatgc	8	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	182403818	182403818	C	A	SNP	CERKL	ENST00000339098	human	ensembl	69_37n	-1	known	splice_site	c.1616+1	e13+1	1.000	-	-	-	no_errors	CERKL	HGNC	ENSG00000188452	357	1	0.28	227	31	12.02	-	-	-	A	182403818	C	A	182403818	5	1	275	1	0	0	0	0	0	0	1	0	3297	521	18	4	67	4	CERKL	2	182403818	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60214	182403818	60795555	889	26576										
SSFA2	0	genome.wustl.edu	37	chr2	182766778	182766778	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaaatgtttcagtgattgAagaaagtggcaataaaaacg	9	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	182766778	182766778	A	C	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.998	p.E333A	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	64	0	0	42	16	27.59	-	-	-	C	182766778	A	C	182766778	3	2	275	1	0	0	0	0	1	0	0	0	15274	246	9	5	1028	5	SSFA2	2	182766778	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	362960	182766778	60432595	890	26577										
PDE1A	0	genome.wustl.edu	37	chr2	183051295	183051295	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaagagaaaatgttggctCtactatgaaatcgatgaaac	9	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183051295	183051295	C	T	SNP	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	missense	c.1276	p.E426K	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252	242	0	0	114	21	15.56	-	-	-	T	183051295	C	T	183051295	3	4	275	1	0	0	0	0	1	0	0	0	11706	922	32	2	421	2	PDE1A	2	183051295	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	284517	183051295	60148078	891	26578										
NCKAP1	0	genome.wustl.edu	37	chr2	183790503	183790503	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaagacataaggaaaacaaGattccaaaagatccattgta	7	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183790503	183790503	G	T	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.3332	p.S1111Y	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	215	0	0	195	36	15.58	-	-	-	T	183790503	G	T	183790503	3	4	275	1	0	0	0	0	1	0	0	0	10293	942	33	2	76	2	NCKAP1	2	183790503	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	739208	183790503	59408870	892	26579										
NCKAP1	0	genome.wustl.edu	37	chr2	183850956	183850956	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattaatacgtttattatagCtaggtgcaaaaacaaattag	6	5	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183850956	183850956	C	A	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	splice_site	c.966-1	e11-1	1.000	-	-	-	no_errors	NCKAP1	HGNC	ENSG00000061676	262	0	0	148	22	12.94	-	-	-	A	183850956	C	A	183850956	5	1	275	1	0	0	0	0	0	0	1	0	10293	811	28	4	2527	4	NCKAP1	2	183850956	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60453	183850956	59348417	893	26580										
NCKAP1	0	genome.wustl.edu	37	chr2	183853877	183853877	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaggttcagtgctgtagcGtcagtatttaggatcccatg	11	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183853877	183853877	G	A	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	silent	c.846	p.D282	0.981	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	313	0	0	231	27	10.42	-	-	-	A	183853877	G	A	183853877	2	1	275	1	0	0	0	0	0	0	0	1	10293	1136	40	1		1	NCKAP1	2	183853877	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2921	183853877	59345496	894	26581										
NCKAP1	0	genome.wustl.edu	37	chr2	183866921	183866921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgccttcctttcttcaattCgagacagcagtatcattagt	6	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183866921	183866921	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.464	p.R155Q	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	395	0	0	290	40	12.12	-	-	-	T	183866921	C	T	183866921	3	4	275	1	0	0	0	0	1	0	0	0	10293	884	31	1	3048	1	NCKAP1	2	183866921	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13044	183866921	59332452	895	26582										
DUSP19	0	genome.wustl.edu	37	chr2	183951780	183951780	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttaaggtgactcatattCttaatgttgcatatggagtt	8	5	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	183951780	183951780	C	A	SNP	DUSP19	ENST00000354221	human	ensembl	69_37n	1	known	missense	c.286	p.L96I	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP19	HGNC	ENSG00000162999	476	0	0	311	104	25.06	-	-	-	A	183951780	C	A	183951780	3	1	275	1	0	0	0	0	1	0	0	0	4853	913	32	2	296	2	DUSP19	2	183951780	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	84859	183951780	59247593	896	26583										
ZNF804A	0	genome.wustl.edu	37	chr2	185802282	185802282	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acataatttaacatattctaGaacttactgttgttggaaaa	5	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	185802282	185802282	G	T	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	missense	c.2159	p.R720I	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	111	0	0	78	21	21.21	-	-	-	T	185802282	G	T	185802282	3	4	275	1	0	0	0	0	1	0	0	0	18263	942	33	2	2173	2	ZNF804A	2	185802282	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1850502	185802282	57397091	897	26584										
ZNF804A	0	genome.wustl.edu	37	chr2	185802602	185802602	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accccggatttgaaactttaGaactcaaagaaaatacagat	6	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	185802602	185802602	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	missense	c.2479	p.E827K	0.081	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	117	0	0	95	13	12.04	-	-	-	A	185802602	G	A	185802602	3	1	275	1	0	0	0	0	1	0	0	0	18263	943	33	2	2493	2	ZNF804A	2	185802602	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	320	185802602	57396771	898	26585										
FAM171B	0	genome.wustl.edu	37	chr2	187627462	187627462	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatacatcccccactaaaaGaaggggcagaccaccactag	7	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	187627462	187627462	G	T	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.2393	p.R798I	0.780	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	192	0	0	86	37	30.08	-	-	-	T	187627462	G	T	187627462	3	4	275	1	0	0	0	0	1	0	0	0	5531	942	33	2	2423	2	FAM171B	2	187627462	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1824860	187627462	55571911	899	26586										
COL3A1	0	genome.wustl.edu	37	chr2	189868784	189868784	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgcgggtaacactggtgCtcctggcagccctggagtgt	14	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	189868784	189868784	C	A	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.2738	p.A913D	0.966	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	64	0	0	29	21	42	-	-	-	A	189868784	C	A	189868784	3	1	275	1	0	0	0	0	1	0	0	0	3718	797	28	4	2892	4	COL3A1	2	189868784	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2241322	189868784	53330589	900	26587										
ASNSD1	0	genome.wustl.edu	37	chr2	190532551	190532551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattctcgtcatcgtgtccGctttcagtcgcatgggctgg	11	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	190532551	190532551	G	A	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.1526	p.R509H	0.998	pfam_Asn_synthase	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	237	0	0	129	16	11.03	-	-	-	A	190532551	G	A	190532551	3	1	275	1	0	0	0	0	1	0	0	0	1053	1087	38	1	1532	1	ASNSD1	2	190532551	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	663767	190532551	52666822	901	26588										
ASNSD1	0	genome.wustl.edu	37	chr2	190535346	190535346	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccatgcagtttggatcaaGaattgcaaaaatggaaaaaa	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	190535346	190535346	G	T	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.1826	p.R609I	1.000	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	150	0	0	67	21	23.86	-	-	-	T	190535346	G	T	190535346	3	4	275	1	0	0	0	0	1	0	0	0	1053	942	33	2	1836	2	ASNSD1	2	190535346	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2795	190535346	52664027	902	26589										
MFSD6	0	genome.wustl.edu	37	chr2	191301650	191301650	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtagttgtcataataggaGaatttttcagtgcctcttct	9	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	191301650	191301650	G	T	SNP	MFSD6	ENST00000281416	human	ensembl	69_37n	1	known	nonsense	c.895	p.E299*	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690	275	0	0	189	35	15.62	-	-	-	T	191301650	G	T	191301650	4	4	275	1	0	0	0	0	0	1	0	0	9606	943	33	2	897	2	MFSD6	2	191301650	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	766304	191301650	51897723	903	26590										
MFSD6	0	genome.wustl.edu	37	chr2	191301809	191301809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcgactacacccacatcGaagtgctcatcgatggaaag	10	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	191301809	191301809	G	A	SNP	MFSD6	ENST00000281416	human	ensembl	69_37n	1	known	missense	c.1054	p.E352K	0.482	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690	136	0	0	101	15	12.93	-	-	-	A	191301809	G	A	191301809	3	1	275	1	0	0	0	0	1	0	0	0	9606	1059	37	1	1056	1	MFSD6	2	191301809	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	159	191301809	51897564	904	26591										
GLS	0	genome.wustl.edu	37	chr2	191760449	191760449	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagacaaagatctttttaaAaagtaaaagtttctgccaaa	5	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	191760449	191760449	A	C	SNP	GLS	ENST00000320717	human	ensembl	69_37n	1	known	missense	c.603	p.K201N	1.000	NULL	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419	104	0	0	82	35	29.91	-	-	-	C	191760449	A	C	191760449	3	2	275	1	0	0	0	0	1	0	0	0	6515	11	1	5	613	5	GLS	2	191760449	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	458640	191760449	51438924	905	26592										
SDPR	0	genome.wustl.edu	37	chr2	192701198	192701198	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctggcgagaaaatgctttCttgaggctatccactttctt	8	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	192701198	192701198	C	A	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	missense	c.729	p.K243N	1.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	212	0	0	139	22	13.66	-	-	-	A	192701198	C	A	192701198	3	1	275	1	0	0	0	0	1	0	0	0	14058	912	32	2	552	2	SDPR	2	192701198	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	940749	192701198	50498175	906	26593										
SDPR	0	genome.wustl.edu	37	chr2	192701375	192701375	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgttttcatccggaagctcCtccttcccttccacggcacc	6	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	192701375	192701375	C	A	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	missense	c.552	p.E184D	0.988	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	131	0	0	75	20	21.05	-	-	-	A	192701375	C	A	192701375	3	1	275	1	0	0	0	0	1	0	0	0	14058	680	24	4	729	4	SDPR	2	192701375	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	177	192701375	50497998	907	26594										
TMEFF2	0	genome.wustl.edu	37	chr2	192863917	192863917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagttggtttgagaacagTcaatattacacacacaccta	7	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	192863917	192863917	T	G	SNP	TMEFF2	ENST00000272771	human	ensembl	69_37n	-1	known	missense	c.554	p.D185A	1.000	pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339	147	0	0	82	18	18	-	-	-	G	192863917	T	G	192863917	3	3	275	1	0	0	0	0	1	0	0	0	16109	1667	58	5	590	5	TMEFF2	2	192863917	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	162542	192863917	50335456	908	26595										
SLC39A10	0	genome.wustl.edu	37	chr2	196544850	196544850	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaaccattgccatgaagaAcatgaccatggccctgaagc	9	12	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	196544850	196544850	A	G	SNP	SLC39A10	ENST00000359634	human	ensembl	69_37n	1	known	silent	c.84	p.E28	0.794	NULL	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950	114	0	0	62	31	33.33	-	-	-	G	196544850	A	G	196544850	2	3	275	1	0	0	0	0	0	0	0	1	14702	40	2	5		5	SLC39A10	2	196544850	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3680933	196544850	46654523	909	26596										
DNAH7	0	genome.wustl.edu	37	chr2	196673492	196673492	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaggcaaatcatctaatcGacatatttcatcccaggatt	7	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	196673492	196673492	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.9997	p.R3333*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	247	0	0	220	28	11.29	-	-	-	A	196673492	G	A	196673492	4	1	275	1	0	0	0	0	0	1	0	0	4641	1066	37	1	2129	1	DNAH7	2	196673492	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	128642	196673492	46525881	910	26597										
DNAH7	0	genome.wustl.edu	37	chr2	196825151	196825151	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcatcccactcagtaatCatcttctccatcgccttttc	3	16	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	196825151	196825151	C	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.2724	p.M908I	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	152	0	0	75	29	27.88	-	-	-	A	196825151	C	A	196825151	3	1	275	1	0	0	0	0	1	0	0	0	4641	826	29	2	9542	2	DNAH7	2	196825151	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	151659	196825151	46374222	911	26598										
DNAH7	0	genome.wustl.edu	37	chr2	196834764	196834764	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctccaaatgaataaaattCttctgattgcttagcataac	4	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	196834764	196834764	C	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.2113	p.E705*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	213	0	0	154	18	10.47	-	-	-	A	196834764	C	A	196834764	4	1	275	1	0	0	0	0	0	1	0	0	4641	922	32	2	10157	2	DNAH7	2	196834764	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9613	196834764	46364609	912	26599										
HECW2	0	genome.wustl.edu	37	chr2	197184344	197184344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggagtggccattgtgttCgatagcatctaagtaatcat	10	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	197184344	197184344	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.1270	p.E424K	0.998	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	89	0	0	69	15	17.86	-	-	-	T	197184344	C	T	197184344	3	4	275	1	0	0	0	0	1	0	0	0	7094	893	31	1	3532	1	HECW2	2	197184344	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	349580	197184344	46015029	913	26600										
CCDC150	0	genome.wustl.edu	37	chr2	197521737	197521737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcattctaaggacctgaaGctgttgcatctcgaagttat	10	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	197521737	197521737	G	T	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.453	p.K151N	1.000	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	234	0	0	164	26	13.68	-	-	-	T	197521737	G	T	197521737	3	4	275	1	0	0	0	0	1	0	0	0	2810	962	34	4	467	4	CCDC150	2	197521737	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	337393	197521737	45677636	914	26601										
CCDC150	0	genome.wustl.edu	37	chr2	197583326	197583326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagttgaaagaagacctcGaggctgtggaggacagggaa	16	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	197583326	197583326	G	A	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.1966	p.E656K	0.111	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	308	0	0	228	72	24	-	-	-	A	197583326	G	A	197583326	3	1	275	1	0	0	0	0	1	0	0	0	2810	1059	37	1	2036	1	CCDC150	2	197583326	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	61589	197583326	45616047	915	26602										
PGAP1	0	genome.wustl.edu	37	chr2	197740525	197740525	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcttttctcttttttaaaGaattcacaatctacaacaaa	1	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	197740525	197740525	G	T	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.1371	p.F457L	1.000	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	237	0	0	175	31	15.05	-	-	-	T	197740525	G	T	197740525	3	4	275	1	0	0	0	0	1	0	0	0	11851	933	33	2	1453	2	PGAP1	2	197740525	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	157199	197740525	45458848	916	26603										
PGAP1	0	genome.wustl.edu	37	chr2	197757952	197757952	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaaactgacagtttcttCttggaattttgagttatcta	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	197757952	197757952	C	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.945	p.K315N	1.000	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	504	0	0	316	38	10.73	-	-	-	A	197757952	C	A	197757952	3	1	275	1	0	0	0	0	1	0	0	0	11851	912	32	2	1903	2	PGAP1	2	197757952	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17427	197757952	45441421	917	26604										
SF3B1	0	genome.wustl.edu	37	chr2	198285249	198285249	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaatctttggaggtctgtgCtcagcaaatggatcatactg	11	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198285249	198285249	C	T	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	silent	c.318	p.E106	1.000	NULL	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	691	0	0	571	92	13.83	-	-	-	T	198285249	C	T	198285249	2	4	275	1	0	0	0	0	0	0	0	1	14237	796	28	4		4	SF3B1	2	198285249	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	527297	198285249	44914124	918	26605										
HSPD1	0	genome.wustl.edu	37	chr2	198359469	198359469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctccgtttgcagaaatcGtagcaacctgaaataatcca	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198359469	198359469	G	A	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	missense	c.518	p.T173M	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	101	0	0	99	13	11.61	-	-	-	A	198359469	G	A	198359469	3	1	275	1	0	0	0	0	1	0	0	0	7482	1145	40	1	1235	1	HSPD1	2	198359469	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74220	198359469	44839904	919	26606										
RFTN2	0	genome.wustl.edu	37	chr2	198480650	198480650	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgcttgtcagaagccatccGaattcagccagagtgtgcag	11	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198480650	198480650	G	A	SNP	RFTN2	ENST00000295049	human	ensembl	69_37n	-1	known	silent	c.1104	p.F368	0.996	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	385	0	0	274	49	15.17	-	-	-	A	198480650	G	A	198480650	2	1	275	1	0	0	0	0	0	0	0	1	13342	1049	37	1		1	RFTN2	2	198480650	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	121181	198480650	44718723	920	26607										
BOLL	0	genome.wustl.edu	37	chr2	198641827	198641827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttgtgtttcaaaagtgaCgaaaccatacctaaataaat	5	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198641827	198641827	C	T	SNP	BOLL	ENST00000321801	human	ensembl	69_37n	-1	known	missense	c.268	p.V90I	0.121	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	BOLL	HGNC	ENSG00000152430	240	0	0	132	47	26.26	-	-	-	T	198641827	C	T	198641827	3	4	275	1	0	0	0	0	1	0	0	0	1494	536	19	1	651	1	BOLL	2	198641827	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	161177	198641827	44557546	921	26608										
BOLL	0	genome.wustl.edu	37	chr2	198646557	198646557	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggattaggggatggagaTaatgaatctgtttgcatctg	13	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198646557	198646557	T	G	SNP	BOLL	ENST00000321801	human	ensembl	69_37n	-1	known	missense	c.54	p.L18F	0.999	NULL	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	BOLL	HGNC	ENSG00000152430	325	0	0	160	52	24.53	-	-	-	G	198646557	T	G	198646557	3	3	275	1	0	0	0	0	1	0	0	0	1494	1403	49	5	873	5	BOLL	2	198646557	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4730	198646557	44552816	922	26609										
PLCL1	0	genome.wustl.edu	37	chr2	198950526	198950526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggaattccagcggattgttCggaacaaagaactaaaactg	10	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	198950526	198950526	C	T	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.2285	p.S762L	0.717	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	198	0	0	125	17	11.89	-	-	-	T	198950526	C	T	198950526	3	4	275	1	0	0	0	0	1	0	0	0	12113	893	31	1	2291	1	PLCL1	2	198950526	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	303969	198950526	44248847	923	26610										
C2orf47	0	genome.wustl.edu	37	chr2	200826635	200826635	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtggaaactaaacaacttCttagtgcaagctatgagtaa	8	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	200826635	200826635	C	A	SNP	C2orf47	ENST00000295079	human	ensembl	69_37n	1	known	missense	c.781	p.L261I	1.000	NULL	NULL	-	no_errors	C2orf47	HGNC	ENSG00000162972	331	0	0	207	24	10.39	-	-	-	A	200826635	C	A	200826635	3	1	275	1	0	0	0	0	1	0	0	0	2189	913	32	2	795	2	C2orf47	2	200826635	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1876109	200826635	42372738	924	26611										
KCTD18	0	genome.wustl.edu	37	chr2	201369515	201369515	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaagaatatgtctccatttCattggccaaatggtcagaca	7	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	201369515	201369515	C	A	SNP	KCTD18	ENST00000359878	human	ensembl	69_37n	-1	known	nonsense	c.328	p.E110*	1.000	superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729	119	0	0	81	14	14.74	-	-	-	A	201369515	C	A	201369515	4	1	275	1	0	0	0	0	0	1	0	0	8159	835	29	2	972	2	KCTD18	2	201369515	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	542880	201369515	41829858	925	26612										
AOX1	0	genome.wustl.edu	37	chr2	201459997	201459997	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taactatacctcttccagttCgactcacaggaactaagtat	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	201459997	201459997	C	T	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	nonsense	c.106	p.R36*	0.001	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	258	0	0	253	47	15.61	-	-	-	T	201459997	C	T	201459997	4	4	275	1	0	0	0	0	0	1	0	0	730	876	31	1	116	1	AOX1	2	201459997	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90482	201459997	41739376	926	26613										
AOX1	0	genome.wustl.edu	37	chr2	201521604	201521604	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatcttgatggctctgtgCtggtcactcacggtggaatt	11	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	201521604	201521604	C	T	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	silent	c.3115	p.L1039	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	320	0	0	140	60	30	-	-	-	T	201521604	C	T	201521604	2	4	275	1	0	0	0	0	0	0	0	1	730	796	28	4		4	AOX1	2	201521604	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61607	201521604	41677769	927	26614										
AOX1	0	genome.wustl.edu	37	chr2	201527626	201527626	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggcgaaggccagcccttCgaatactttgtttatggagc	11	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	201527626	201527626	C	T	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	silent	c.3477	p.F1159	0.074	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	577	0	0	323	118	26.76	-	-	-	T	201527626	C	T	201527626	2	4	275	1	0	0	0	0	0	0	0	1	730	883	31	1		1	AOX1	2	201527626	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6022	201527626	41671747	928	26615										
ALS2CR12	0	genome.wustl.edu	37	chr2	202207136	202207136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcatctcagcacagcggaGatccatttcactggagagct	9	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202207136	202207136	G	A	SNP	ALS2CR12	ENST00000286190	human	ensembl	69_37n	-1	known	missense	c.481	p.L161F	0.000	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	ALS2CR12	HGNC	ENSG00000155749	272	1	0.37	204	32	13.56	-	-	-	A	202207136	G	A	202207136	3	1	275	1	0	0	0	0	1	0	0	0	553	942	33	2	892	2	ALS2CR12	2	202207136	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	679510	202207136	40992237	929	26616										
TRAK2	0	genome.wustl.edu	37	chr2	202245876	202245876	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctataggacaaggcaggaGaattcacagccgtgttggat	13	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202245876	202245876	G	T	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.2135	p.S712Y	1.000	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	117	0	0	78	16	17.02	-	-	-	T	202245876	G	T	202245876	3	4	275	1	0	0	0	0	1	0	0	0	16546	942	33	2	613	2	TRAK2	2	202245876	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38740	202245876	40953497	930	26617										
TRAK2	0	genome.wustl.edu	37	chr2	202254599	202254599	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaatctcagctgccaaaGattcctaagaaaaagagttt	6	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202254599	202254599	G	T	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.1118	p.S373Y	1.000	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	201	0	0	177	21	10.61	-	-	-	T	202254599	G	T	202254599	3	4	275	1	0	0	0	0	1	0	0	0	16546	942	33	2	1650	2	TRAK2	2	202254599	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8723	202254599	40944774	931	26618										
ALS2CR11	0	genome.wustl.edu	37	chr2	202352429	202352429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaagcctgatgaaaccattCgacgacttgtaaactttcca	6	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202352429	202352429	C	T	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	missense	c.1778	p.R593Q	0.941	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	376	0	0	215	53	19.78	-	-	-	T	202352429	C	T	202352429	3	4	275	1	0	0	0	0	1	0	0	0	552	884	31	1	97	1	ALS2CR11	2	202352429	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97830	202352429	40846944	932	26619										
ALS2CR11	0	genome.wustl.edu	37	chr2	202358222	202358222	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggtgttctttatctaattCtatcactttgattatcccag	5	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202358222	202358222	C	A	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	nonsense	c.2842	p.E948*	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	81	0	0	35	7	16.67	-	-	-	A	202358222	C	A	202358222	4	1	275	1	0	0	0	0	0	1	0	0	552	922	32	2	2628	2	ALS2CR11	2	202358222	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5793	202358222	40841151	933	26620										
ALS2CR11	0	genome.wustl.edu	37	chr2	202358408	202358408	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccaagttcattggtgtttCacttggctctttcacttcta	6	10	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	202358408	202358408	C	A	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	nonsense	c.2656	p.E886*	0.001	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	99	0	0	72	26	26.53	-	-	-	A	202358408	C	A	202358408	4	1	275	1	0	0	0	0	0	1	0	0	552	835	29	2	2814	2	ALS2CR11	2	202358408	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	186	202358408	40840965	934	26621										
BMPR2	0	genome.wustl.edu	37	chr2	203378463	203378463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccacctcattcatttaaccGagatgagacaataatcattg	5	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	203378463	203378463	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	missense	c.440	p.R147Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	117	0	0	122	30	19.74	-	-	-	A	203378463	G	A	203378463	3	1	275	1	0	0	0	0	1	0	0	0	1476	1058	37	1	454	1	BMPR2	2	203378463	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1020055	203378463	39820910	935	26622										
NBEAL1	0	genome.wustl.edu	37	chr2	204002928	204002928	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcaatctcagaaaacagaGaagcaaaaactaatccagta	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	204002928	204002928	G	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	nonsense	c.4522	p.E1508*	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	162	0	0	67	23	25.56	-	-	-	T	204002928	G	T	204002928	4	4	275	1	0	0	0	0	0	1	0	0	10260	943	33	2	4632	2	NBEAL1	2	204002928	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	624465	204002928	39196445	936	26623										
NBEAL1	0	genome.wustl.edu	37	chr2	204031988	204031988	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggcctcattctcaaattCgagagattcatctccggcgt	9	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	204031988	204031988	C	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	nonsense	c.5815	p.R1939*	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	233	0	0	221	32	12.65	-	-	-	T	204031988	C	T	204031988	4	4	275	1	0	0	0	0	0	1	0	0	10260	876	31	1	5957	1	NBEAL1	2	204031988	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29060	204031988	39167385	937	26624										
ABI2	0	genome.wustl.edu	37	chr2	204245048	204245048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaccttgaacgaccagttCgttatattagaaaacctatt	5	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	204245048	204245048	C	T	SNP	ABI2	ENST00000295851	human	ensembl	69_37n	1	known	missense	c.403	p.R135C	1.000	pfam_Abl-interactor_HHR_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443	231	0	0	68	15	18.07	-	-	-	T	204245048	C	T	204245048	3	4	275	1	0	0	0	0	1	0	0	0	89	884	31	1	413	1	ABI2	2	204245048	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	213060	204245048	38954325	938	26625										
ICOS	0	genome.wustl.edu	37	chr2	204820475	204820475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgcagttgctgaaagggGggcaaatactctgcgatctc	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	204820475	204820475	G	A	SNP	ICOS	ENST00000316386	human	ensembl	69_37n	1	known	missense	c.175	p.G59R	0.000	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600	200	0	0	179	23	11.39	-	-	-	A	204820475	G	A	204820475	3	1	275	1	0	0	0	0	1	0	0	0	7540	1232	43	4	181	4	ICOS	2	204820475	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	575427	204820475	38378898	939	26626										
PARD3B	0	genome.wustl.edu	37	chr2	206165385	206165385	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccccggccgcacatggttCgaggccgaggctgcaatgag	16	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	206165385	206165385	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	69_37n	1	known	nonsense	c.2317	p.R773*	0.950	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	351	0	0	149	75	33.33	-	-	-	T	206165385	C	T	206165385	4	4	275	1	0	0	0	0	0	1	0	0	11517	876	31	1	2383	1	PARD3B	2	206165385	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1344910	206165385	37033988	940	26627										
ZDBF2	0	genome.wustl.edu	37	chr2	207172320	207172320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgttaacaaaataaacaGaaagaagcaatatgttctag	7	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	207172320	207172320	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.3068	p.R1023I	0.005	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	91	0	0	44	16	26.67	-	-	-	T	207172320	G	T	207172320	3	4	275	1	0	0	0	0	1	0	0	0	17695	942	33	2	3078	2	ZDBF2	2	207172320	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1006935	207172320	36027053	941	26628										
ZDBF2	0	genome.wustl.edu	37	chr2	207173694	207173694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaggcagaccttcagaaggAagagcatgttgtcatggaag	14	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	207173694	207173694	A	G	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.4442	p.E1481G	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	193	0	0	129	32	19.75	-	-	-	G	207173694	A	G	207173694	3	3	275	1	0	0	0	0	1	0	0	0	17695	246	9	5	4452	5	ZDBF2	2	207173694	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1374	207173694	36025679	942	26629										
ZDBF2	0	genome.wustl.edu	37	chr2	207174276	207174276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggaagacacttctcatcGaacgactcaccgactgcaga	8	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	207174276	207174276	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.5024	p.R1675Q	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	133	0	0	68	10	12.82	-	-	-	A	207174276	G	A	207174276	3	1	275	1	0	0	0	0	1	0	0	0	17695	1058	37	1	5034	1	ZDBF2	2	207174276	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	582	207174276	36025097	943	26630										
ZDBF2	0	genome.wustl.edu	37	chr2	207176298	207176298	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggctagcaaacaaactgaGaggtaatgaggtaaaataga	11	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	207176298	207176298	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.7046	p.R2349I	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	101	0	0	77	9	10.47	-	-	-	T	207176298	G	T	207176298	3	4	275	1	0	0	0	0	1	0	0	0	17695	942	33	2	7056	2	ZDBF2	2	207176298	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2022	207176298	36023075	944	26631										
KLF7	0	genome.wustl.edu	37	chr2	207988594	207988594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaccctcttcttgttttCgggacatgcttcagccccca	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	207988594	207988594	C	T	SNP	KLF7	ENST00000309446	human	ensembl	69_37n	-1	known	missense	c.637	p.E213K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	99	0	0	62	16	20.25	-	-	-	T	207988594	C	T	207988594	3	4	275	1	0	0	0	0	1	0	0	0	8404	893	31	1	283	1	KLF7	2	207988594	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	812296	207988594	35210779	945	26632										
PIKFYVE	0	genome.wustl.edu	37	chr2	209150459	209150459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttctcctaggagacctccGagcttgcacatattgtagaa	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	209150459	209150459	G	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.623	p.R208Q	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	247	0	0	168	21	11.11	-	-	-	A	209150459	G	A	209150459	3	1	275	1	0	0	0	0	1	0	0	0	11998	1058	37	1	641	1	PIKFYVE	2	209150459	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1161865	209150459	34048914	946	26633										
MAP2	0	genome.wustl.edu	37	chr2	210559607	210559607	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcactgatgataaagttCgaagagatttggccacagac	11	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	210559607	210559607	C	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	nonsense	c.2713	p.R905*	0.920	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	151	0	0	82	27	24.32	-	-	-	T	210559607	C	T	210559607	4	4	275	1	0	0	0	0	0	1	0	0	9306	876	31	1	2727	1	MAP2	2	210559607	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1409148	210559607	32639766	947	26634										
ACADL	0	genome.wustl.edu	37	chr2	211085402	211085402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaatcacttcttcttggaAaaacttccttacacttttcc	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	211085402	211085402	A	G	SNP	ACADL	ENST00000233710	human	ensembl	69_37n	-1	known	missense	c.202	p.F68L	1.000	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADL	HGNC	ENSG00000115361	227	1	0.44	142	25	14.97	-	-	-	G	211085402	A	G	211085402	3	3	275	1	0	0	0	0	1	0	0	0	112	14	1	5	1130	5	ACADL	2	211085402	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	525795	211085402	32113971	948	26635										
MYL1	0	genome.wustl.edu	37	chr2	211163223	211163223	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagctcgaaggacatcaccGacctggcttaaggtgatctt	11	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	211163223	211163223	G	A	SNP	MYL1	ENST00000352451	human	ensembl	69_37n	-1	known	silent	c.225	p.V75	0.849	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL1	HGNC	ENSG00000168530	221	0	0	150	62	28.97	-	-	-	A	211163223	G	A	211163223	2	1	275	1	0	0	0	0	0	0	0	1	10115	1045	37	1		1	MYL1	2	211163223	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77821	211163223	32036150	949	26636										
ABCA12	0	genome.wustl.edu	37	chr2	215818620	215818620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgttgattaagagtcgcaagGaaaaaaacatggtgccctga	11	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	215818620	215818620	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.6605	p.S2202F	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	210	0	0	119	18	13.14	-	-	-	A	215818620	G	A	215818620	3	1	275	1	0	0	0	0	1	0	0	0	30	1174	41	2	1222	2	ABCA12	2	215818620	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4655397	215818620	27380753	950	26637										
FN1	0	genome.wustl.edu	37	chr2	216272861	216272861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctggggtctgctccagcGaacaacaattgaggtgtcat	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	216272861	216272861	G	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.2488	p.R830C	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	179	0	0	96	39	28.68	-	-	-	A	216272861	G	A	216272861	3	1	275	1	0	0	0	0	1	0	0	0	6008	1058	37	1	5065	1	FN1	2	216272861	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	454241	216272861	26926512	951	26638										
FN1	0	genome.wustl.edu	37	chr2	216274748	216274748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctgatgagctggccctcGtataccacaccaggcttcag	10	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	216274748	216274748	G	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	silent	c.2031	p.Y677	0.835	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	1067	1	0.09	587	83	12.31	-	-	-	A	216274748	G	A	216274748	2	1	275	1	0	0	0	0	0	0	0	1	6008	1140	40	1		1	FN1	2	216274748	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1887	216274748	26924625	952	26639										
TMEM169	0	genome.wustl.edu	37	chr2	216964905	216964905	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatcctttcttttgttgtCtctttctactacggcactat	4	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	216964905	216964905	C	A	SNP	TMEM169	ENST00000295658	human	ensembl	69_37n	1	known	silent	c.534	p.V178	1.000	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449	1070	1	0.09	1050	163	13.43	-	-	-	A	216964905	C	A	216964905	2	1	275	1	0	0	0	0	0	0	0	1	16179	900	32	2		2	TMEM169	2	216964905	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	690157	216964905	26234468	953	26640										
XRCC5	0	genome.wustl.edu	37	chr2	216986843	216986843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagaggagatggcccctttCgcttaggtggccatgggcct	14	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	216986843	216986843	C	T	SNP	XRCC5	ENST00000392132	human	ensembl	69_37n	1	known	missense	c.550	p.R184C	0.000	pfam_Ku_N,smart_VWF_A	pfam_Ku_N,pfam_Ku_PK_bind,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,superfamily_SPOC-like,superfamily_Ku_PK_bind,smart_VWF_A,smart_DNA_helicase_ATP-dep_Ku	-	no_errors	XRCC5	HGNC	ENSG00000079246	177	1	0.56	141	21	12.96	-	-	-	T	216986843	C	T	216986843	3	4	275	1	0	0	0	0	1	0	0	0	17553	884	31	1	572	1	XRCC5	2	216986843	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21938	216986843	26212530	954	26641										
SMARCAL1	0	genome.wustl.edu	37	chr2	217293398	217293398	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcgtttgcttctcagctCaagaagacatctctcagtct	8	12	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	217293398	217293398	C	A	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	silent	c.1227	p.L409	0.229	NULL	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	244	0	0	161	18	10.06	-	-	-	A	217293398	C	A	217293398	2	1	275	1	0	0	0	0	0	0	0	1	14862	813	29	2		2	SMARCAL1	2	217293398	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	306555	217293398	25905975	955	26642										
TNP1	0	genome.wustl.edu	37	chr2	217724753	217724753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttaatttgcggctggtcGacatggtaagttctgccaaa	10	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	217724753	217724753	G	A	SNP	TNP1	ENST00000236979	human	ensembl	69_37n	-1	known	missense	c.5	p.S2L	1.000	pfam_Nuclear_transition_prot1	pfam_Nuclear_transition_prot1	-	no_errors	TNP1	HGNC	ENSG00000118245	184	0	0	170	75	30.61	-	-	-	A	217724753	G	A	217724753	3	1	275	1	0	0	0	0	1	0	0	0	16428	1059	37	1	170	1	TNP1	2	217724753	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	431355	217724753	25474620	956	26643										
ARPC2	0	genome.wustl.edu	37	chr2	219114119	219114119	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcacaccaatgccagtgctCgagacaacaccatcaacctg	7	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	219114119	219114119	C	T	SNP	ARPC2	ENST00000295685	human	ensembl	69_37n	1	known	nonsense	c.709	p.R237*	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466	190	0	0	140	23	14.02	-	-	-	T	219114119	C	T	219114119	4	4	275	1	0	0	0	0	0	1	0	0	975	876	31	1	739	1	ARPC2	2	219114119	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1389366	219114119	24085254	957	26644										
ARPC2	0	genome.wustl.edu	37	chr2	219118827	219118827	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagacttcatagttcccaaGaattaaaaaaaaaaaaaaaa	3	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	219118827	219118827	G	T	SNP	ARPC2	ENST00000477992	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARPC2	HGNC	ENSG00000163466	15	0	0	15	4	18.18	-	-	-	T	219118827	G	T	219118827	1	4	275	0	1	0	0	0	0	0	0	0	975	957	33	2		2	ARPC2	2	219118827	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4708	219118827	24080546	958	26645										
VIL1	0	genome.wustl.edu	37	chr2	219305528	219305528	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatcttccccctggagcaGctagtgaacaagcctgtaga	9	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	219305528	219305528	G	A	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	silent	c.2313	p.Q771	1.000	superfamily_Villin_headpiece,pfscan_Villin_headpiece	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	84	0	0	81	10	10.99	-	-	-	A	219305528	G	A	219305528	2	1	275	1	0	0	0	0	0	0	0	1	17261	962	34	4		4	VIL1	2	219305528	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186701	219305528	23893845	959	26646										
USP37	0	genome.wustl.edu	37	chr2	219399388	219399388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgcttttctctactgctgGttaaatactttctggaggga	10	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	219399388	219399388	G	T	SNP	USP37	ENST00000258399	human	ensembl	69_37n	-1	known	missense	c.722	p.T241N	0.998	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP37	HGNC	ENSG00000135913	493	0	0	349	41	10.51	-	-	-	T	219399388	G	T	219399388	3	4	275	1	0	0	0	0	1	0	0	0	17165	1261	44	4	2289	4	USP37	2	219399388	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	93860	219399388	23799985	960	26647										
CCDC108	0	genome.wustl.edu	37	chr2	219903692	219903692	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaagaggaataagggggaAagaagaggcaaatgagactg	17	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	219903692	219903692	A	C	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.79	p.F27V	0.006	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	508	0	0	416	156	27.27	-	-	-	C	219903692	A	C	219903692	3	2	275	1	0	0	0	0	1	0	0	0	2768	14	1	5	5978	5	CCDC108	2	219903692	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	504304	219903692	23295681	961	26648										
ABCB6	0	genome.wustl.edu	37	chr2	220078881	220078881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcgatagcgttccacttCgtaactctcggcgttgtaat	8	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220078881	220078881	C	T	SNP	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	missense	c.1414	p.E472K	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	83	0	0	78	9	10.34	-	-	-	T	220078881	C	T	220078881	3	4	275	1	0	0	0	0	1	0	0	0	45	893	31	1	1162	1	ABCB6	2	220078881	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	175189	220078881	23120492	962	26649										
ATG9A	0	genome.wustl.edu	37	chr2	220088390	220088390	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacctccacggtgaagtttcGgaagaagtctataatctcca	9	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220088390	220088390	G	A	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	nonsense	c.1516	p.R506*	1.000	pfam_Autophagy-rel_prot_9	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	46	0	0	27	12	30.77	-	-	-	A	220088390	G	A	220088390	4	1	275	1	0	0	0	0	0	1	0	0	1106	1124	39	1	1031	1	ATG9A	2	220088390	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9509	220088390	23110983	963	26650										
GLB1L	0	genome.wustl.edu	37	chr2	220107271	220107271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagatgaatttcaggttttCgaagcaaccaggatgggaga	12	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220107271	220107271	C	T	SNP	GLB1L	ENST00000295759	human	ensembl	69_37n	-1	known	missense	c.416	p.R139Q	0.334	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L	HGNC	ENSG00000163521	153	0	0	88	31	26.05	-	-	-	T	220107271	C	T	220107271	3	4	275	1	0	0	0	0	1	0	0	0	6480	884	31	1	1600	1	GLB1L	2	220107271	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18881	220107271	23092102	964	26651										
SPEG	0	genome.wustl.edu	37	chr2	220354580	220354580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcccctgggagcagtccccGaagctctcccaggcctgagg	12	17	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220354580	220354580	G	A	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.8840	p.R2947Q	0.034	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	18	0	0	13	4	23.53	-	-	-	A	220354580	G	A	220354580	3	1	275	1	0	0	0	0	1	0	0	0	15127	1058	37	1	8994	1	SPEG	2	220354580	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	247309	220354580	22844793	965	26652										
GMPPA	0	genome.wustl.edu	37	chr2	220366626	220366626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtggtctttaccattttcGagaccagatcctggctggga	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220366626	220366626	G	A	SNP	GMPPA	ENST00000313597	human	ensembl	69_37n	1	known	missense	c.296	p.R99Q	1.000	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591	153	0	0	107	12	10	-	-	-	A	220366626	G	A	220366626	3	1	275	1	0	0	0	0	1	0	0	0	6546	1058	37	1	310	1	GMPPA	2	220366626	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12046	220366626	22832747	966	26653										
CHPF	0	genome.wustl.edu	37	chr2	220405716	220405716	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgttccagttcagctcgggcGaaagctttgtgcagctggta	13	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	220405716	220405716	G	A	SNP	CHPF	ENST00000243776	human	ensembl	69_37n	-1	known	silent	c.1020	p.F340	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989	208	0	0	93	15	13.89	-	-	-	A	220405716	G	A	220405716	2	1	275	1	0	0	0	0	0	0	0	1	3397	1049	37	1		1	CHPF	2	220405716	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39090	220405716	22793657	967	26654										
EPHA4	0	genome.wustl.edu	37	chr2	222321462	222321462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgttcctggcagctgtccGaactatacgatagcttcgct	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	222321462	222321462	G	A	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	missense	c.1474	p.R492W	0.695	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	243	1	0.41	181	26	12.56	-	-	-	A	222321462	G	A	222321462	3	1	275	1	0	0	0	0	1	0	0	0	5206	1057	37	1	1530	1	EPHA4	2	222321462	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1915746	222321462	20877911	968	26655										
WDFY1	0	genome.wustl.edu	37	chr2	224746737	224746737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatgactgggtaacttgagCgcttgctgctgcacttcccg	11	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	224746737	224746737	C	T	SNP	WDFY1	ENST00000233055	human	ensembl	69_37n	-1	known	missense	c.986	p.R329H	1.000	pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449	198	0	0	153	28	15.38	-	-	-	T	224746737	C	T	224746737	3	4	275	1	0	0	0	0	1	0	0	0	17365	768	27	1	258	1	WDFY1	2	224746737	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2425275	224746737	18452636	969	26656										
SERPINE2	0	genome.wustl.edu	37	chr2	224866465	224866465	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccatggggagagatcacGatgttgtcatgaggcctcga	13	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	224866465	224866465	G	A	SNP	SERPINE2	ENST00000258405	human	ensembl	69_37n	-1	known	silent	c.153	p.I51	0.095	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919	260	0	0	195	50	20.41	-	-	-	A	224866465	G	A	224866465	2	1	275	1	0	0	0	0	0	0	0	1	14200	1048	37	1		1	SERPINE2	2	224866465	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	119728	224866465	18332908	970	26657										
DOCK10	0	genome.wustl.edu	37	chr2	225670004	225670004	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctaacttgtcaaatcgaaGagttgagccaatcaaagaca	7	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	225670004	225670004	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.3970	p.L1324I	0.992	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	177	0	0	148	27	15.43	-	-	-	T	225670004	G	T	225670004	3	4	275	1	0	0	0	0	1	0	0	0	4720	942	33	2	2674	2	DOCK10	2	225670004	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	803539	225670004	17529369	971	26658										
DOCK10	0	genome.wustl.edu	37	chr2	225750448	225750448	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgggttctttggatattttCtcatctttgtaaaagttcat	7	5	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	225750448	225750448	C	A	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.687	p.E229D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	275	1	0.36	152	76	33.33	-	-	-	A	225750448	C	A	225750448	3	1	275	1	0	0	0	0	1	0	0	0	4720	912	32	2	6073	2	DOCK10	2	225750448	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80444	225750448	17448925	972	26659										
DOCK10	0	genome.wustl.edu	37	chr2	225796315	225796315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcttgaagaggatcattcCggtaggtcttttcaagttct	10	7	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	225796315	225796315	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.194	p.R65Q	0.013	pfam_DUF3398	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	587	0	0	285	119	29.38	-	-	-	T	225796315	C	T	225796315	3	4	275	1	0	0	0	0	1	0	0	0	4720	652	23	1	6586	1	DOCK10	2	225796315	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45867	225796315	17403058	973	26660										
COL4A3	0	genome.wustl.edu	37	chr2	228131147	228131147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttataggtgacatcgtttttCgcaagggtccacctggagat	11	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228131147	228131147	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	missense	c.1330	p.R444C	0.058	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	165	0	0	74	34	31.48	-	-	-	T	228131147	C	T	228131147	3	4	275	1	0	0	0	0	1	0	0	0	3721	884	31	1	1416	1	COL4A3	2	228131147	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2334832	228131147	15068226	974	26661										
COL4A3	0	genome.wustl.edu	37	chr2	228162503	228162503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagaaggattcccagggccaCcaggtctgcccggtgcaatt	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228162503	228162503	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	missense	c.3679	p.P1227S	0.998	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	88	0	0	45	15	25	-	-	-	T	228162503	C	T	228162503	3	4	275	1	0	0	0	0	1	0	0	0	3721	507	18	4	3845	4	COL4A3	2	228162503	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31356	228162503	15036870	975	26662										
TM4SF20	0	genome.wustl.edu	37	chr2	228243838	228243838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataattcctgggaaccaccaCtcaaagcaagagatggggtt	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228243838	228243838	C	A	SNP	TM4SF20	ENST00000304568	human	ensembl	69_37n	-1	known	missense	c.147	p.E49D	1.000	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF20	HGNC	ENSG00000168955	99	0	0	84	41	32.8	-	-	-	A	228243838	C	A	228243838	3	1	275	1	0	0	0	0	1	0	0	0	16064	564	20	4	558	4	TM4SF20	2	228243838	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	81335	228243838	14955535	976	26663										
SPHKAP	0	genome.wustl.edu	37	chr2	228846573	228846573	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccagctgcacgacatctaGaaactaaaataaaacggaga	7	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228846573	228846573	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4963	p.L1655I	1.000	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	85	0	0	65	24	26.97	-	-	-	T	228846573	G	T	228846573	3	4	275	1	0	0	0	0	1	0	0	0	15139	933	33	2	143	2	SPHKAP	2	228846573	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	602735	228846573	14352800	977	26664										
SPHKAP	0	genome.wustl.edu	37	chr2	228881446	228881446	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgtttacattcggtaacaGagtctttcctcgggcaatcg	10	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228881446	228881446	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4124	p.S1375Y	0.002	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	57	0	0	54	6	10	-	-	-	T	228881446	G	T	228881446	3	4	275	1	0	0	0	0	1	0	0	0	15139	942	33	2	1002	2	SPHKAP	2	228881446	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34873	228881446	14317927	978	26665										
SPHKAP	0	genome.wustl.edu	37	chr2	228881964	228881964	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctctgctgtctctttcGatgtccctcagcatgtacct	6	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	228881964	228881964	G	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	silent	c.3606	p.I1202	0.025	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	49	0	0	22	8	26.67	-	-	-	A	228881964	G	A	228881964	2	1	275	1	0	0	0	0	0	0	0	1	15139	1048	37	1		1	SPHKAP	2	228881964	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	518	228881964	14317409	979	26666										
TRIP12	0	genome.wustl.edu	37	chr2	230638875	230638875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttccctcctttcttcagttCgatattgggaaaccctggca	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	230638875	230638875	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.5407	p.E1803K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	286	0	0	171	21	10.88	-	-	-	T	230638875	C	T	230638875	3	4	275	1	0	0	0	0	1	0	0	0	16652	893	31	1	591	1	TRIP12	2	230638875	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1756911	230638875	12560498	980	26667										
TRIP12	0	genome.wustl.edu	37	chr2	230654349	230654349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catacaagtaataccagtatCgactgatagcatgtaaaact	6	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	230654349	230654349	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.4448	p.R1483Q	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	307	0	0	244	32	11.59	-	-	-	T	230654349	C	T	230654349	3	4	275	1	0	0	0	0	1	0	0	0	16652	884	31	1	1578	1	TRIP12	2	230654349	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15474	230654349	12545024	981	26668										
SP140	0	genome.wustl.edu	37	chr2	231155181	231155181	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcctctctttcagcttcaaGaaagcacaaagatgaaactg	6	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	231155181	231155181	G	T	SNP	SP140	ENST00000392045	human	ensembl	69_37n	1	known	missense	c.1727	p.R576I	0.407	superfamily_SAND_dom-like	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	527	1	0.19	404	49	10.82	-	-	-	T	231155181	G	T	231155181	3	4	275	1	0	0	0	0	1	0	0	0	15051	942	33	2	1918	2	SP140	2	231155181	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	500832	231155181	12044192	982	26669										
SP100	0	genome.wustl.edu	37	chr2	231368998	231368998	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actctatataaggagcgattCaaacaaggtgagtttactgg	10	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	231368998	231368998	C	A	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	missense	c.1863	p.F621L	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	763	0	0	476	163	25.51	-	-	-	A	231368998	C	A	231368998	3	1	275	1	0	0	0	0	1	0	0	0	15049	825	29	2	1945	2	SP100	2	231368998	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	213817	231368998	11830375	983	26670										
ITM2C	0	genome.wustl.edu	37	chr2	231740356	231740356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcccgagataacttcttcCgctgtggtgtgctgtatgag	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	231740356	231740356	C	T	SNP	ITM2C	ENST00000326427	human	ensembl	69_37n	1	known	missense	c.283	p.R95C	1.000	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2C	HGNC	ENSG00000135916	58	0	0	12	9	42.86	-	-	-	T	231740356	C	T	231740356	3	4	275	1	0	0	0	0	1	0	0	0	7968	652	23	1	293	1	ITM2C	2	231740356	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	371358	231740356	11459017	984	26671										
KCNJ13	0	genome.wustl.edu	37	chr2	233632925	233632925	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtcagtcctgtttcagaGatctgaaaattgtcaatgct	8	8	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	233632925	233632925	G	T	SNP	KCNJ13	ENST00000233826	human	ensembl	69_37n	-1	known	silent	c.1059	p.I353	1.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir7	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir7,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ13	HGNC	ENSG00000115474	227	0	0	157	31	16.49	-	-	-	T	233632925	G	T	233632925	2	4	275	1	0	0	0	0	0	0	0	1	8101	932	33	2		2	KCNJ13	2	233632925	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1892569	233632925	9566448	985	26672										
DGKD	0	genome.wustl.edu	37	chr2	234355419	234355419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcctcctctaccgtcaccGaagacttcagcgaggattcc	7	17	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234355419	234355419	G	A	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.1396	p.E466K	0.999	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	103	0	0	36	5	12.2	-	-	-	A	234355419	G	A	234355419	3	1	275	1	0	0	0	0	1	0	0	0	4503	1059	37	1	1466	1	DGKD	2	234355419	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	722494	234355419	8843954	986	26673										
USP40	0	genome.wustl.edu	37	chr2	234474155	234474155	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcccttttccatactgatTattagacacagtggaatact	5	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234474155	234474155	T	G	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	missense	c.82	p.N28H	0.705	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC	ENSG00000085982	205	0	0	130	46	26.14	-	-	-	G	234474155	T	G	234474155	3	3	275	1	0	0	0	0	1	0	0	0	17169	1754	61	5	3713	5	USP40	2	234474155	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	118736	234474155	8725218	987	26674										
UGT1A9	0	genome.wustl.edu	37	chr2	234580887	234580887	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaatggaaagcacaagtaCgaagtatatattctctatta	6	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234580887	234580887	C	T	SNP	UGT1A9	ENST00000354728	human	ensembl	69_37n	1	known	nonsense	c.307	p.R103*	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119	337	0	0	260	101	27.98	-	-	-	T	234580887	C	T	234580887	4	4	275	1	0	0	0	0	0	1	0	0	17049	528	19	1	309	1	UGT1A9	2	234580887	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	106732	234580887	8618486	988	26675										
UGT1A3	0	genome.wustl.edu	37	chr2	234638270	234638270	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctggctaagtacctgtcGattcctactgtgtttttttt	9	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234638270	234638270	G	A	SNP	UGT1A3	ENST00000482026	human	ensembl	69_37n	1	known	silent	c.498	p.S166	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	392	0	0	233	89	27.64	-	-	-	A	234638270	G	A	234638270	2	1	275	1	0	0	0	0	0	0	0	1	17043	1045	37	1		1	UGT1A3	2	234638270	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57383	234638270	8561103	989	26676										
UGT1A1	0	genome.wustl.edu	37	chr2	234669013	234669013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcccagtggtgtcccatgCtgggaagatactgttgatcc	14	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234669013	234669013	C	A	SNP	UGT1A1	ENST00000305208	human	ensembl	69_37n	1	known	missense	c.80	p.A27D	0.035	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635	93	0	0	36	16	30.77	-	-	-	A	234669013	C	A	234669013	3	1	275	1	0	0	0	0	1	0	0	0	17041	797	28	4	82	4	UGT1A1	2	234669013	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30743	234669013	8530360	990	26677										
UGT1A4	0	genome.wustl.edu	37	chr2	234676536	234676536	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccgaccatcgaatcttgcGaacaacacgatacttgttaa	6	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	234676536	234676536	G	A	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1041	p.A347	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	434	0	0	277	42	13.08	-	-	-	A	234676536	G	A	234676536	2	1	275	1	0	0	0	0	0	0	0	1	17044	1045	37	1		1	UGT1A4	2	234676536	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7523	234676536	8522837	991	26678										
AGAP1	0	genome.wustl.edu	37	chr2	236659077	236659077	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgacctgaaacggtgcacGtactacgagacgtgtgctac	11	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	236659077	236659077	G	T	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	silent	c.618	p.T206	0.015	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	165	0	0	90	48	34.78	-	-	-	T	236659077	G	T	236659077	2	4	275	1	0	0	0	0	0	0	0	1	366	1132	40	3		3	AGAP1	2	236659077	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1982541	236659077	6540296	992	26679										
CXCR7	0	genome.wustl.edu	37	chr2	237489126	237489126	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgatggatctgcatctcttCgactactcagagccagggaa	10	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	237489126	237489126	C	T	SNP	CXCR7	ENST00000272928	human	ensembl	69_37n	1	known	silent	c.18	p.F6	0.621	prints_RDC1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Frt_met_rcpt	-	no_errors	CXCR7	HGNC	ENSG00000144476	132	0	0	94	33	25.78	-	-	-	T	237489126	C	T	237489126	2	4	275	1	0	0	0	0	0	0	0	1	4127	883	31	1		1	CXCR7	2	237489126	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	830049	237489126	5710247	993	26680										
LRRFIP1	0	genome.wustl.edu	37	chr2	238671280	238671280	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggaggtgaaaaatgaaatCgtggcgaatgtggggaaaag	17	2	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	238671280	238671280	C	A	SNP	LRRFIP1	ENST00000392000	human	ensembl	69_37n	1	known	silent	c.924	p.I308	0.815	pfam_Leu-rich_rep_flightless-int_pr	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	98	0	0	63	7	10	-	-	-	A	238671280	C	A	238671280	2	1	275	1	0	0	0	0	0	0	0	1	9093	874	31	3		3	LRRFIP1	2	238671280	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1182154	238671280	4528093	994	26681										
PER2	0	genome.wustl.edu	37	chr2	239161562	239161562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatccttacggtcagaggCgccttcggctgctggtcccg	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	239161562	239161562	C	T	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	silent	c.3102	p.A1034	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	56	0	0	22	5	18.52	-	-	-	T	239161562	C	T	239161562	2	4	275	1	0	0	0	0	0	0	0	1	11803	755	27	1		1	PER2	2	239161562	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	490282	239161562	4037811	995	26682										
PER2	0	genome.wustl.edu	37	chr2	239162317	239162317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccaaggtgaatctattcCggaagtatttcttagtccag	8	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	239162317	239162317	C	T	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.2347	p.G783R	0.877	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	10	0	0	15	5	25	-	-	-	T	239162317	C	T	239162317	3	4	275	1	0	0	0	0	1	0	0	0	11803	661	23	1	1440	1	PER2	2	239162317	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	755	239162317	4037056	996	26683										
PER2	0	genome.wustl.edu	37	chr2	239164301	239164301	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcgggtatcacttacttcGttcacttggctgccccttgg	9	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	239164301	239164301	G	A	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	nonsense	c.2317	p.R773*	0.039	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	61	0	0	57	8	12.12	-	-	-	A	239164301	G	A	239164301	4	1	275	1	0	0	0	0	0	1	0	0	11803	1153	40	1	1474	1	PER2	2	239164301	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1984	239164301	4035072	997	26684										
KIF1A	0	genome.wustl.edu	37	chr2	241712600	241712600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcacctcatccttcagctCgcggatcagcttgttgttgg	11	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	241712600	241712600	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.1111	p.E371K	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	47	0	0	28	9	24.32	-	-	-	T	241712600	C	T	241712600	3	4	275	1	0	0	0	0	1	0	0	0	8335	893	31	1	4101	1	KIF1A	2	241712600	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2548299	241712600	1486773	998	26685										
PASK	0	genome.wustl.edu	37	chr2	242076464	242076464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaccaaacagtgtcagcgcGaagctgtggttgatgccgtg	13	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	242076464	242076464	G	A	SNP	PASK	ENST00000433589	human	ensembl	69_37n	-1	novel	missense	c.536	p.S179L	0.995	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PASK	HGNC	ENSG00000115687	134	0	0	74	11	12.94	-	-	-	A	242076464	G	A	242076464	3	1	275	1	0	0	0	0	1	0	0	0	11545	1049	37	1	2927	1	PASK	2	242076464	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	363864	242076464	1122909	999	26686										
HDLBP	0	genome.wustl.edu	37	chr2	242178112	242178112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttgaacactgaaatcccGagtaatctgctggattctgg	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	242178112	242178112	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.2701	p.R901W	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	124	0	0	87	16	15.53	-	-	-	A	242178112	G	A	242178112	3	1	275	1	0	0	0	0	1	0	0	0	7076	1057	37	1	1141	1	HDLBP	2	242178112	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101648	242178112	1021261	1000	26687										
SEPT2	0	genome.wustl.edu	37	chr2	242265527	242265527	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttcacactgatggtggtCggtaagaaattaatctatag	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	2	242265527	242265527	C	T	SNP	SEPT2	ENST00000360051	human	ensembl	69_37n	1	known	silent	c.129	p.V43	0.384	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385	208	0	0	167	46	21.6	-	-	-	T	242265527	C	T	242265527	2	4	275	1	0	0	0	0	0	0	0	1	14152	898	31	1		1	SEPT2	2	242265527	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	87415	242265527	933846	1001	26688										
CNTN6	0	genome.wustl.edu	37	chr3	1337431	1337431	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacttgctttataactaacAaagaggcccagagaagtgtt	8	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	1337431	1337431	A	G	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.601	p.K201E	0.661	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	167	0	0	118	22	15.71	-	-	-	G	1337431	A	G	1337431	3	3	275	1	0	0	0	0	1	0	0	0	3675	131	5	5	619	5	CNTN6	3	1337431	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09		1337431	196684999	1002	26689										
CNTN6	0	genome.wustl.edu	37	chr3	1371511	1371511	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtccagttaaaaaaaagtCttttgttcaagttggtgggg	11	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	1371511	1371511	C	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.1256	p.S419Y	0.427	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	263	0	0	155	23	12.92	-	-	-	A	1371511	C	A	1371511	3	1	275	1	0	0	0	0	1	0	0	0	3675	913	32	2	1294	2	CNTN6	3	1371511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34080	1371511	196650919	1003	26690										
CNTN4	0	genome.wustl.edu	37	chr3	2787337	2787337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtgcacagcgacaaactCgtttggaacaattgttagca	9	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	2787337	2787337	C	T	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.314	p.S105L	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	451	0	0	181	89	32.96	-	-	-	T	2787337	C	T	2787337	3	4	275	1	0	0	0	0	1	0	0	0	3673	893	31	1	324	1	CNTN4	3	2787337	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1415826	2787337	195235093	1004	26691										
CNTN4	0	genome.wustl.edu	37	chr3	2967408	2967408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgtaagccaaaagcgtctCcaaaacctgtttacacctgg	8	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	2967408	2967408	C	T	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.1303	p.P435S	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	271	0	0	196	30	13.1	-	-	-	T	2967408	C	T	2967408	3	4	275	1	0	0	0	0	1	0	0	0	3673	855	30	2	1341	2	CNTN4	3	2967408	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	180071	2967408	195055022	1005	26692										
ITPR1	0	genome.wustl.edu	37	chr3	4808261	4808261	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataagaagtcagagaaattCtttaaggtgttttatgaccg	10	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	4808261	4808261	C	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.5547	p.F1849L	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	158	0	0	156	19	10.86	-	-	-	A	4808261	C	A	4808261	3	1	275	1	0	0	0	0	1	0	0	0	7974	912	32	2	5762	2	ITPR1	3	4808261	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1840853	4808261	193214169	1006	26693										
ITPR1	0	genome.wustl.edu	37	chr3	4817094	4817094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaccctggaaagtctgaccGaatactgtcaaggaccttgc	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	4817094	4817094	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.6103	p.E2035K	1.000	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	127	1	0.78	83	29	25.66	-	-	-	A	4817094	G	A	4817094	3	1	275	1	0	0	0	0	1	0	0	0	7974	1059	37	1	6326	1	ITPR1	3	4817094	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8833	4817094	193205336	1007	26694										
SETD5	0	genome.wustl.edu	37	chr3	9489440	9489440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggccccggccgaagagtcGaatttctcggtacaggacca	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9489440	9489440	G	A	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.1853	p.R618Q	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	68	0	0	62	9	12.68	-	-	-	A	9489440	G	A	9489440	3	1	275	1	0	0	0	0	1	0	0	0	14222	1058	37	1	1903	1	SETD5	3	9489440	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4672346	9489440	188532990	1008	26695										
SETD5	0	genome.wustl.edu	37	chr3	9512216	9512216	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactaacagctgtgctgataGaccttccctactcaactcag	6	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9512216	9512216	G	T	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.2798	p.R933I	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	272	0	0	314	77	19.69	-	-	-	T	9512216	G	T	9512216	3	4	275	1	0	0	0	0	1	0	0	0	14222	942	33	2	2864	2	SETD5	3	9512216	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22776	9512216	188510214	1009	26696										
OGG1	0	genome.wustl.edu	37	chr3	9798849	9798849	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctagatggggcaccctggAcaaagaaattccccaagcac	11	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9798849	9798849	A	G	SNP	OGG1	ENST00000302003	human	ensembl	69_37n	1	known	missense	c.1070	p.D357G	0.635	NULL	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026	262	0	0	174	23	11.68	-	-	-	G	9798849	A	G	9798849	3	3	275	1	0	0	0	0	1	0	0	0	10918	275	10	5	1123	5	OGG1	3	9798849	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	286633	9798849	188223581	1010	26697										
TTLL3	0	genome.wustl.edu	37	chr3	9854975	9854975	+	Nonsense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccagccatcacagctgttCgacttcgatgatttactgaa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9854975	9854975	C	T	SNP	TTLL3	ENST00000430390	human	ensembl	69_37n	1	known	nonsense	c.253	p.R85*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTLL3	HGNC	ENSG00000214021	117	0	0	84	13	13.27	-	-	-	T	9854975	C	T	9854975	4	4	275	1	0	0	0	0	0	1	0	0	16825	883	31	1	271	1	TTLL3	3	9854975	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56126	9854975	188167455	1011	26698	236	2								
TTLL3	0	genome.wustl.edu	37	chr3	9854981	9854981	+	Nonsense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcacagctgttcgacttCgatgatttactgaaatttga							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9854981	9854981	C	T	SNP	TTLL3	ENST00000430390	human	ensembl	69_37n	1	known	nonsense	c.259	p.R87*	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTLL3	HGNC	ENSG00000214021	118	0	0	88	17	16.19	-	-	-	T	9854981	C	T	9854981	4	4	275	1	0	0	0	0	0	1	0	0	16825	883	31	1	277	1	TTLL3	3	9854981	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6	9854981	188167449	1012	26699	236	2								
RPUSD3	0	genome.wustl.edu	37	chr3	9880756	9880756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcagctggcagcagaaatCgctggcccaggacagtgccc	12	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	9880756	9880756	C	T	SNP	RPUSD3	ENST00000383820	human	ensembl	69_37n	-1	known	missense	c.824	p.R275Q	1.000	superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD3	HGNC	ENSG00000156990	298	0	0	128	145	52.73	-	-	-	T	9880756	C	T	9880756	3	4	275	1	0	0	0	0	1	0	0	0	13754	884	31	1	239	1	RPUSD3	3	9880756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25775	9880756	188141674	1013	26700										
C3orf24	0	genome.wustl.edu	37	chr3	10123020	10123020	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caactgtcctaaaatcatttTtatttttagtgtttagctgc	5	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	10123020	10123020	T	G	SNP	C3orf24	ENST00000431315	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	C3orf24	HGNC	ENSG00000163705	457	1	0.22	332	138	29.36	-	-	-	G	10123020	T	G	10123020	1	3	275	0	1	0	0	0	0	0	0	0	2237	1856	64	5		5	C3orf24	3	10123020	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	242264	10123020	187899410	1014	26701										
ATP2B2	0	genome.wustl.edu	37	chr3	10387137	10387137	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggtgagctggaactgcaaGaatttggagatgctgtcata	13	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	10387137	10387137	G	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.2634	p.F878L	1.000	tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	244	0	0	152	21	12.14	-	-	-	T	10387137	G	T	10387137	3	4	275	1	0	0	0	0	1	0	0	0	1144	933	33	2	1121	2	ATP2B2	3	10387137	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	264117	10387137	187635293	1015	26702										
ATP2B2	0	genome.wustl.edu	37	chr3	10430013	10430013	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcccccaggagggtaaaGatgatgccagtctgagagtt	13	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	10430013	10430013	G	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	silent	c.855	p.I285	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	410	0	0	385	78	16.85	-	-	-	T	10430013	G	T	10430013	2	4	275	1	0	0	0	0	0	0	0	1	1144	932	33	2		2	ATP2B2	3	10430013	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42876	10430013	187592417	1016	26703										
SYN2	0	genome.wustl.edu	37	chr3	12182164	12182164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctccagggccaagtgctttCggggcaaaaaagtccttgga	12	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	12182164	12182164	C	T	SNP	SYN2	ENST00000540660	human	ensembl	69_37n	1	known	missense	c.187	p.R63W	1.000	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_fold,prints_Synapsin	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN2	HGNC	ENSG00000157152	482	0	0	434	64	12.83	-	-	-	T	12182164	C	T	12182164	3	4	275	1	0	0	0	0	1	0	0	0	15533	875	31	1	398	1	SYN2	3	12182164	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1752151	12182164	185840266	1017	26704										
TSEN2	0	genome.wustl.edu	37	chr3	12574283	12574283	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagggctaggtaaaaagttCtttttgttgtaatcgtccat	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	12574283	12574283	C	A	SNP	TSEN2	ENST00000475595	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	TSEN2	HGNC	ENSG00000154743	118	0	0	123	18	12.77	-	-	-	A	12574283	C	A	12574283	1	1	275	0	1	0	0	0	0	0	0	0	16708	928	32	2		2	TSEN2	3	12574283	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	392119	12574283	185448147	1018	26705										
FBLN2	0	genome.wustl.edu	37	chr3	13612393	13612393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctccccggttgccacgggAacttctcagatgccgaggag	13	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	13612393	13612393	A	G	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	missense	c.538	p.N180D	0.009	NULL	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	20	0	0	16	4	20	-	-	-	G	13612393	A	G	13612393	3	3	275	1	0	0	0	0	1	0	0	0	5745	246	9	5		5	FBLN2	3	13612393	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1038110	13612393	184410037	1019	26706										
WNT7A	0	genome.wustl.edu	37	chr3	13860507	13860507	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgacatagcagcaccagtgGaacttacagttgcactgcca	9	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	13860507	13860507	G	A	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	silent	c.984	p.F328	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	78	0	0	38	12	24	-	-	-	A	13860507	G	A	13860507	2	1	275	1	0	0	0	0	0	0	0	1	17491	1165	41	2		2	WNT7A	3	13860507	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248114	13860507	184161923	1020	26707										
LSM3	0	genome.wustl.edu	37	chr3	14223156	14223156	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagaaatgaccgagagcttCgaggcagattacatgtaagt	12	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	14223156	14223156	C	T	SNP	LSM3	ENST00000306024	human	ensembl	69_37n	1	known	nonsense	c.118	p.R40*	0.997	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM3	HGNC	ENSG00000170860	99	0	0	59	10	14.29	-	-	-	T	14223156	C	T	14223156	4	4	275	1	0	0	0	0	0	1	0	0	9123	876	31	1	124	1	LSM3	3	14223156	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	362649	14223156	183799274	1021	26708										
SLC6A6	0	genome.wustl.edu	37	chr3	14485283	14485283	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggagaagtggtctagcaaGatcgactttgtgctctctgt	13	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	14485283	14485283	G	T	SNP	SLC6A6	ENST00000360861	human	ensembl	69_37n	1	known	missense	c.141	p.K47N	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389	506	1	0.2	336	51	13.18	-	-	-	T	14485283	G	T	14485283	3	4	275	1	0	0	0	0	1	0	0	0	14777	933	33	2	143	2	SLC6A6	3	14485283	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	262127	14485283	183537147	1022	26709										
GRIP2	0	genome.wustl.edu	37	chr3	14558622	14558622	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccgccccattgtagttCgaggactcatgggctgggat	12	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	14558622	14558622	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	246	0	0	127	50	28.09	-	-	-	T	14558622	C	T	14558622	1	4	275	0	1	0	0	0	0	0	0	0	6839	884	31	1		1	GRIP2	3	14558622	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73339	14558622	183463808	1023	26710										
C3orf19	0	genome.wustl.edu	37	chr3	14703099	14703099	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatcatagacaagcgcaaaGaaatggaggcatctggtgcc	12	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	14703099	14703099	G	T	SNP	C3orf19	ENST00000383794	human	ensembl	69_37n	1	known	nonsense	c.370	p.E124*	0.998	NULL	NULL	-	no_errors	C3orf19	HGNC	ENSG00000154781	128	0	0	112	45	28.66	-	-	-	T	14703099	G	T	14703099	4	4	275	1	0	0	0	0	0	1	0	0	2232	943	33	2	388	2	C3orf19	3	14703099	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	144477	14703099	183319331	1024	26711										
C3orf20	0	genome.wustl.edu	37	chr3	14746120	14746120	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctatgatggctcctccttCgtttagtatccttttatttg	6	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	14746120	14746120	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.1155	p.F385	0.961	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	210	0	0	111	37	25	-	-	-	T	14746120	C	T	14746120	2	4	275	1	0	0	0	0	0	0	0	1	2233	883	31	1		1	C3orf20	3	14746120	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43021	14746120	183276310	1025	26712										
ZFYVE20	0	genome.wustl.edu	37	chr3	15115666	15115666	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctcgaaaggattgtactCtttcaggatgcgggctgaag	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	15115666	15115666	C	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	nonsense	c.1978	p.E660*	1.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	143	0	0	124	21	14.48	-	-	-	A	15115666	C	A	15115666	4	1	275	1	0	0	0	0	0	1	0	0	17762	922	32	2	380	2	ZFYVE20	3	15115666	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	369546	15115666	182906764	1026	26713										
HACL1	0	genome.wustl.edu	37	chr3	15609442	15609442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccagggcttctatctttagCcaccacggcagctgcaatag	9	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	15609442	15609442	C	A	SNP	HACL1	ENST00000321169	human	ensembl	69_37n	-1	known	missense	c.1318	p.A440S	0.993	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_Thiamin_PyroP_enz_cen_dom,pfam_TPP_enzyme-bd_C,pfam_CO_DH_CoA_synth	-	no_errors	HACL1	HGNC	ENSG00000131373	374	0	0	225	100	30.77	-	-	-	A	15609442	C	A	15609442	3	1	275	1	0	0	0	0	1	0	0	0	6992	739	26	4	434	4	HACL1	3	15609442	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	493776	15609442	182412988	1027	26714										
ANKRD28	0	genome.wustl.edu	37	chr3	15765995	15765995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttgcatgtcacttcagctCcatgcgacacaagcaatttc	6	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	15765995	15765995	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.686	p.G229E	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	105	0	0	78	10	11.36	-	-	-	T	15765995	C	T	15765995	3	4	275	1	0	0	0	0	1	0	0	0	656	855	30	2	2662	2	ANKRD28	3	15765995	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	156553	15765995	182256435	1028	26715										
GALNTL2	0	genome.wustl.edu	37	chr3	16269006	16269006	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgctgtggatgaacgatGaatgtcaatgtcagaaggaa	12	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	16269006	16269006	G	T	SNP	GALNTL2	ENST00000339732	human	ensembl	69_37n	1	known	nonstop	c.1919	p.*640L	0.882	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	550	0	0	375	159	29.72	-	-	-	T	16269006	G	T	16269006	4	4	275	1	0	0	0	0	0	0	0	0	6272	1285	45	2	1957	2	GALNTL2	3	16269006	Nonstop_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	503011	16269006	181753424	1029	26716										
PLCL2	0	genome.wustl.edu	37	chr3	17051308	17051308	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggttcgctccaactctaGaatttatcataggtactttt	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	17051308	17051308	G	T	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.92	p.R31I	0.992	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	101	0	0	41	5	10.87	-	-	-	T	17051308	G	T	17051308	3	4	275	1	0	0	0	0	1	0	0	0	12114	942	33	2	470	2	PLCL2	3	17051308	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	782302	17051308	180971122	1030	26717										
SATB1	0	genome.wustl.edu	37	chr3	18436217	18436217	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctgctggttgaccaattGaggactgataggtgttgata	13	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	18436217	18436217	G	T	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.943	p.Q315K	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	267	0	0	209	46	18.04	-	-	-	T	18436217	G	T	18436217	3	4	275	1	0	0	0	0	1	0	0	0	13940	1299	45	2	1368	2	SATB1	3	18436217	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1384909	18436217	179586213	1031	26718										
KCNH8	0	genome.wustl.edu	37	chr3	19492764	19492764	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgcctcaggtctctgtctCtacacatcaaaacctctttc	5	15	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	19492764	19492764	C	A	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.1693	p.L565I	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	247	0	0	139	35	20.11	-	-	-	A	19492764	C	A	19492764	3	1	275	1	0	0	0	0	1	0	0	0	8092	912	32	2	1731	2	KCNH8	3	19492764	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1056547	19492764	178529666	1032	26719										
KCNH8	0	genome.wustl.edu	37	chr3	19492784	19492784	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacacatcaaaacctctttCtgtgctccgggggagtatct	8	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	19492784	19492784	C	A	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.1713	p.F571L	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	235	0	0	106	45	29.8	-	-	-	A	19492784	C	A	19492784	3	1	275	1	0	0	0	0	1	0	0	0	8092	912	32	2	1751	2	KCNH8	3	19492784	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20	19492784	178529646	1033	26720										
RARB	0	genome.wustl.edu	37	chr3	25542811	25542811	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaagtgggaatgtccaaaGaatgtaagtggagtctcaaa	12	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	25542811	25542811	G	T	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	nonsense	c.466	p.E156*	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	162	0	0	152	19	11.11	-	-	-	T	25542811	G	T	25542811	4	4	275	1	0	0	0	0	0	1	0	0	13136	943	33	2	455	2	RARB	3	25542811	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6050027	25542811	172479619	1034	26721										
TOP2B	0	genome.wustl.edu	37	chr3	25650761	25650761	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacttggattcatcatctgAccaaggattccgtttcttca	7	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	25650761	25650761	A	G	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	missense	c.4006	p.S1336P	1.000	NULL	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	210	0	0	133	15	10.07	-	-	-	G	25650761	A	G	25650761	3	3	275	1	0	0	0	0	1	0	0	0	16462	275	10	5	902	5	TOP2B	3	25650761	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	107950	25650761	172371669	1035	26722										
NEK10	0	genome.wustl.edu	37	chr3	27332819	27332819	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatagttgcctatatatttCaaaggagctttgttctgatt	8	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	27332819	27332819	C	T	SNP	NEK10	ENST00000341435	human	ensembl	69_37n	-1	known	silent	c.1539	p.L513	0.928	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	654	0	0	435	59	11.92	-	-	-	T	27332819	C	T	27332819	2	4	275	1	0	0	0	0	0	0	0	1	10394	825	29	2		2	NEK10	3	27332819	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1682058	27332819	170689611	1036	26723										
NEK10	0	genome.wustl.edu	37	chr3	27394316	27394316	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttacctgatggtgatttCttgctgtttatcagttgatt	10	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	27394316	27394316	C	A	SNP	NEK10	ENST00000341435	human	ensembl	69_37n	-1	known	nonsense	c.58	p.E20*	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	729	0	0	598	198	24.84	-	-	-	A	27394316	C	A	27394316	4	1	275	1	0	0	0	0	0	1	0	0	10394	922	32	2	2172	2	NEK10	3	27394316	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61497	27394316	170628114	1037	26724										
RBMS3	0	genome.wustl.edu	37	chr3	29781331	29781331	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccacaagaatactaagaGacgctaatggagtcagcaga	9	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	29781331	29781331	G	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.520	p.D174Y	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	320	0	0	269	35	11.51	-	-	-	T	29781331	G	T	29781331	3	4	275	1	0	0	0	0	1	0	0	0	13233	942	33	2	538	2	RBMS3	3	29781331	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2387015	29781331	168241099	1038	26725										
STT3B	0	genome.wustl.edu	37	chr3	31677714	31677714	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcctgattaaaaaaataaAattggcttgttgagaacagc	8	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	31677714	31677714	A	C	SNP	STT3B	ENST00000463044	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STT3B	HGNC	ENSG00000163527	44	0	0	30	11	26.83	-	-	-	C	31677714	A	C	31677714	1	2	275	0	1	0	0	0	0	0	0	0	15425	29	1	5		5	STT3B	3	31677714	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1896383	31677714	166344716	1039	26726										
OSBPL10	0	genome.wustl.edu	37	chr3	31871701	31871701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggagcaaagtgagacttCggcttcgggagcttggagca	17	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	31871701	31871701	C	T	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	missense	c.560	p.R187Q	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	154	1	0.64	111	15	11.9	-	-	-	T	31871701	C	T	31871701	3	4	275	1	0	0	0	0	1	0	0	0	11348	884	31	1	1770	1	OSBPL10	3	31871701	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	193987	31871701	166150729	1040	26727										
ZNF860	0	genome.wustl.edu	37	chr3	32030798	32030798	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgatgaagaagttctcatCaacagcgcaaggcaatacag	9	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	32030798	32030798	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	69_37n	1	known	missense	c.227	p.S76L	0.002	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385	133	0	0	124	38	23.46	-	-	-	T	32030798	C	T	32030798	3	4	275	1	0	0	0	0	1	0	0	0	18287	838	29	2	229	2	ZNF860	3	32030798	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	159097	32030798	165991632	1041	26728										
CNOT10	0	genome.wustl.edu	37	chr3	32778978	32778978	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaacaggaattagaaaacTtaaagtgagtatctaaacaa	7	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	32778978	32778978	T	G	SNP	CNOT10	ENST00000454516	human	ensembl	69_37n	1	known	missense	c.1771	p.L591V	1.000	NULL	pfam_TPR-1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	116	0	0	132	32	19.51	-	-	-	G	32778978	T	G	32778978	3	3	275	1	0	0	0	0	1	0	0	0	3648	1606	56	5	1641	5	CNOT10	3	32778978	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	748180	32778978	165243452	1042	26729										
SUSD5	0	genome.wustl.edu	37	chr3	33194682	33194682	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggacagggtggccatgggaGattcctctgtgatgaatctc	14	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	33194682	33194682	G	A	SNP	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	missense	c.1442	p.S481F	0.586	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	539	0	0	405	59	12.66	-	-	-	A	33194682	G	A	33194682	3	1	275	1	0	0	0	0	1	0	0	0	15502	942	33	2	451	2	SUSD5	3	33194682	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	415704	33194682	164827748	1043	26730										
CLASP2	0	genome.wustl.edu	37	chr3	33633913	33633913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgagacaccatttttgttCgacttcttcctctagaatct	5	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	33633913	33633913	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.2042	p.R681Q	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	664	0	0	346	56	13.93	-	-	-	T	33633913	C	T	33633913	3	4	275	1	0	0	0	0	1	0	0	0	3485	884	31	1	2550	1	CLASP2	3	33633913	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	439231	33633913	164388517	1044	26731										
CLASP2	0	genome.wustl.edu	37	chr3	33705003	33705003	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatttggcaaatatcatttCtaatctgggaataaagaata	6	4	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	33705003	33705003	C	A	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	nonsense	c.649	p.E217*	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	269	0	0	255	46	15.28	-	-	-	A	33705003	C	A	33705003	4	1	275	1	0	0	0	0	0	1	0	0	3485	922	32	2	3999	2	CLASP2	3	33705003	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71090	33705003	164317427	1045	26732										
STAC	0	genome.wustl.edu	37	chr3	36485066	36485066	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatccaggtggcaaggctCatgcctttcaggaatacatc	10	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	36485066	36485066	C	T	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	missense	c.322	p.H108Y	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	123	0	0	118	62	34.44	-	-	-	T	36485066	C	T	36485066	3	4	275	1	0	0	0	0	1	0	0	0	15330	826	29	2	328	2	STAC	3	36485066	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2780063	36485066	161537364	1046	26733										
TRANK1	0	genome.wustl.edu	37	chr3	36898426	36898426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtagatccgccctgatttCtccattgcacacgtgttctg	9	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	36898426	36898426	C	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.2655	p.E885D	0.990	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	94	0	0	64	16	19.75	-	-	-	A	36898426	C	A	36898426	3	1	275	1	0	0	0	0	1	0	0	0	16550	912	32	2	6170	2	TRANK1	3	36898426	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	413360	36898426	161124004	1047	26734										
TRANK1	0	genome.wustl.edu	37	chr3	36899389	36899389	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accagcaggtctaacagcttCttcacgcgctttagcatgcc	8	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	36899389	36899389	C	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1692	p.K564N	0.811	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	94	0	0	76	9	10.59	-	-	-	A	36899389	C	A	36899389	3	1	275	1	0	0	0	0	1	0	0	0	16550	912	32	2	7133	2	TRANK1	3	36899389	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	963	36899389	161123041	1048	26735										
TRANK1	0	genome.wustl.edu	37	chr3	36900331	36900331	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaactcgaagtcctcatgtTtcaggcacgtgacaactggc	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	36900331	36900331	T	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1418	p.K473R	0.098	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	173	0	0	93	46	33.09	-	-	-	C	36900331	T	C	36900331	3	2	275	1	0	0	0	0	1	0	0	0	16550	1841	64	5	7411	5	TRANK1	3	36900331	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	942	36900331	161122099	1049	26736										
MLH1	0	genome.wustl.edu	37	chr3	37081766	37081766	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaaaccaagttataccttCtcaacaccaccaagcttagg	4	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37081766	37081766	C	A	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	missense	c.1648	p.L550I	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	217	0	0	124	40	24.39	-	-	-	A	37081766	C	A	37081766	3	1	275	1	0	0	0	0	1	0	0	0	9688	913	32	2	1702	2	MLH1	3	37081766	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	181435	37081766	160940664	1050	26737										
GOLGA4	0	genome.wustl.edu	37	chr3	37323516	37323516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccgtggagtctttgtttcGaagtccgataaaggaatctc	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37323516	37323516	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.230	p.R77Q	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	320	1	0.31	185	23	11.06	-	-	-	A	37323516	G	A	37323516	3	1	275	1	0	0	0	0	1	0	0	0	6607	1058	37	1	310	1	GOLGA4	3	37323516	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	241750	37323516	160698914	1051	26738										
GOLGA4	0	genome.wustl.edu	37	chr3	37388731	37388731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactctttggagaacctaccGaatttgagtatttgcgaaaa	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37388731	37388731	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.6520	p.E2174K	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	163	0	0	104	45	30	-	-	-	A	37388731	G	A	37388731	3	1	275	1	0	0	0	0	1	0	0	0	6607	1059	37	1	6672	1	GOLGA4	3	37388731	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	65215	37388731	160633699	1052	26739										
C3orf35	0	genome.wustl.edu	37	chr3	37459027	37459027	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctaaaaataaagttaatgtCtttggggcaatcataaatat	7	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37459027	37459027	C	A	SNP	C3orf35	ENST00000425564	human	ensembl	69_37n	1	known	silent	c.270	p.V90	0.000	NULL	NULL	-	no_errors	C3orf35	HGNC	ENSG00000198590	514	0	0	335	108	24.38	-	-	-	A	37459027	C	A	37459027	2	1	275	1	0	0	0	0	0	0	0	1	2245	900	32	2		2	C3orf35	3	37459027	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	70296	37459027	160563403	1053	26740										
ITGA9	0	genome.wustl.edu	37	chr3	37574822	37574822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagcaaggcctgtcattaCggtggatgtctccatcttcc	10	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37574822	37574822	C	T	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	missense	c.1391	p.T464M	0.998	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	95	0	0	88	10	10.2	-	-	-	T	37574822	C	T	37574822	3	4	275	1	0	0	0	0	1	0	0	0	7937	536	19	1	1445	1	ITGA9	3	37574822	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115795	37574822	160447608	1054	26741										
ITGA9	0	genome.wustl.edu	37	chr3	37818952	37818952	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatcatccctcaagaacaaGaaaatatcttccacacaata	3	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37818952	37818952	G	T	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	nonsense	c.2611	p.E871*	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	376	0	0	303	55	15.36	-	-	-	T	37818952	G	T	37818952	4	4	275	1	0	0	0	0	0	1	0	0	7937	943	33	2	2705	2	ITGA9	3	37818952	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	244130	37818952	160203478	1055	26742										
ITGA9	0	genome.wustl.edu	37	chr3	37821413	37821413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactgtgaaaaaccaggaatTtcttgcctaacagcacactg	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	37821413	37821413	T	G	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	missense	c.2688	p.I896M	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	177	0	0	170	24	12.37	-	-	-	G	37821413	T	G	37821413	3	3	275	1	0	0	0	0	1	0	0	0	7937	1829	64	5	2786	5	ITGA9	3	37821413	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2461	37821413	160201017	1056	26743										
DLEC1	0	genome.wustl.edu	37	chr3	38104228	38104228	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgatatggaggcaagtctCttgtttttcctccaaagaag	9	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38104228	38104228	C	A	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	missense	c.1030	p.L344I	0.997	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	281	0	0	239	42	14.95	-	-	-	A	38104228	C	A	38104228	3	1	275	1	0	0	0	0	1	0	0	0	4588	913	32	2	1048	2	DLEC1	3	38104228	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	282815	38104228	159918202	1057	26744										
DLEC1	0	genome.wustl.edu	37	chr3	38138087	38138087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggagagcctggggcactcCtcctactctgtggatgatgt	14	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38138087	38138087	C	T	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	silent	c.2199	p.S733	0.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	171	0	0	131	33	20	-	-	-	T	38138087	C	T	38138087	2	4	275	1	0	0	0	0	0	0	0	1	4588	668	24	4		4	DLEC1	3	38138087	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33859	38138087	159884343	1058	26745										
DLEC1	0	genome.wustl.edu	37	chr3	38139081	38139081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggacctgctgtgtgaaatcGaagactcgccctcgccagtg	12	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38139081	38139081	G	A	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	missense	c.2518	p.E840K	0.021	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	117	0	0	111	40	26.49	-	-	-	A	38139081	G	A	38139081	3	1	275	1	0	0	0	0	1	0	0	0	4588	1059	37	1	2584	1	DLEC1	3	38139081	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	994	38139081	159883349	1059	26746										
SCN10A	0	genome.wustl.edu	37	chr3	38797326	38797326	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggggtgatttgttgtcttCtgtggagccctctgacactc	13	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38797326	38797326	C	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	nonsense	c.1414	p.E472*	0.917	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	380	0	0	358	44	10.95	-	-	-	A	38797326	C	A	38797326	4	1	275	1	0	0	0	0	0	1	0	0	14000	922	32	2	4528	2	SCN10A	3	38797326	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	658245	38797326	159225104	1060	26747										
SCN10A	0	genome.wustl.edu	37	chr3	38804996	38804996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgtgaataaatgctcacCtgggatcacagaaactgttt	8	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38804996	38804996	C	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.691	p.G231C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	559	0	0	525	95	15.32	-	-	-	A	38804996	C	A	38804996	3	1	275	1	0	0	0	0	1	0	0	0	14000	695	24	4	5271	4	SCN10A	3	38804996	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7670	38804996	159217434	1061	26748										
SCN11A	0	genome.wustl.edu	37	chr3	38936052	38936052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggctcaggttgtgtgatgCgctgtgcattatcttcacca	11	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	38936052	38936052	C	T	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.2807	p.R936H	0.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	268	0	0	201	28	12.23	-	-	-	T	38936052	C	T	38936052	3	4	275	1	0	0	0	0	1	0	0	0	14001	768	27	1	2616	1	SCN11A	3	38936052	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131056	38936052	159086378	1062	26749										
TTC21A	0	genome.wustl.edu	37	chr3	39177921	39177921	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgaagacattcctgccttCtttgaattggccaagaaggt	9	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	39177921	39177921	C	A	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.3042	p.F1014L	1.000	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	223	0	0	102	14	12.07	-	-	-	A	39177921	C	A	39177921	3	1	275	1	0	0	0	0	1	0	0	0	16784	912	32	2	3132	2	TTC21A	3	39177921	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	241869	39177921	158844509	1063	26750										
MYRIP	0	genome.wustl.edu	37	chr3	40275442	40275442	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagcaggatctacagggccCtgggagtccccacaagtccc	11	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	40275442	40275442	C	A	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	silent	c.1998	p.P666	1.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	196	0	0	134	20	12.99	-	-	-	A	40275442	C	A	40275442	2	1	275	1	0	0	0	0	0	0	0	1	10172	668	24	4		4	MYRIP	3	40275442	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1097521	40275442	157746988	1064	26751										
ZNF619	0	genome.wustl.edu	37	chr3	40529260	40529260	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgcttcatagtgcatcagaGaatccacaatggggagaaac	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	40529260	40529260	G	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	missense	c.1379	p.R460I	0.954	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	200	1	0.5	143	17	10.62	-	-	-	T	40529260	G	T	40529260	3	4	275	1	0	0	0	0	1	0	0	0	18139	942	33	2	1419	2	ZNF619	3	40529260	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	253818	40529260	157493170	1065	26752										
ULK4	0	genome.wustl.edu	37	chr3	41952879	41952879	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgaaactcagttggattttCtgtagcaggaaagtaatatg	10	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	41952879	41952879	C	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	splice_site	c.1016-1	e10-1	1.000	-	-	-	no_errors	ULK4	HGNC	ENSG00000168038	189	0	0	160	19	10.61	-	-	-	A	41952879	C	A	41952879	5	1	275	1	0	0	0	0	0	0	1	0	17075	927	32	2	2920	2	ULK4	3	41952879	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1423619	41952879	156069551	1066	26753										
NKTR	0	genome.wustl.edu	37	chr3	42680096	42680096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggggtcctgttccaattCggaaaacaataggggaaagc	13	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	42680096	42680096	C	T	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.2900	p.S967L	0.001	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	257	0	0	212	31	12.76	-	-	-	T	42680096	C	T	42680096	3	4	275	1	0	0	0	0	1	0	0	0	10520	893	31	1	2946	1	NKTR	3	42680096	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	727217	42680096	155342334	1067	26754										
HHATL	0	genome.wustl.edu	37	chr3	42739819	42739820	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagcacctcttgaagatcINSaaaagtgcctgttacaaacc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	42739819	42739820	-	A	INS	HHATL	ENST00000310417	human	ensembl	69_37n	-1	known	frame_shift_ins	c.508_507	p.D169fs	1.000:1.000	NULL	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282	166	0	0	114	20	14.93	-	-	-	A	42739820	-	A	42739819	7	5	275	1	0	1	1	0	0	0	0	0	7141	826	29	0	1034	0	HHATL	3	42739819	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	59723	42739819	155282611	1068	26755										
CCDC13	0	genome.wustl.edu	37	chr3	42798562	42798562	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaatggtggagctacctgtGaaggcaaatctgtcctcttc	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	42798562	42798562	G	T	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	missense	c.366	p.F122L	0.999	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	1214	0	0	980	146	12.95	-	-	-	T	42798562	G	T	42798562	3	4	275	1	0	0	0	0	1	0	0	0	2790	1281	45	2	1837	2	CCDC13	3	42798562	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58743	42798562	155223868	1069	26756										
CCBP2	0	genome.wustl.edu	37	chr3	42906702	42906702	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactcccgtattggttgtgtCttggtgaggctgaggcccgc	14	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	42906702	42906702	C	A	SNP	CCBP2	ENST00000273145	human	ensembl	69_37n	1	known	silent	c.708	p.V236	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCBP2	HGNC	ENSG00000144648	241	0	0	257	32	11.07	-	-	-	A	42906702	C	A	42906702	2	1	275	1	0	0	0	0	0	0	0	1	2759	900	32	2		2	CCBP2	3	42906702	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	108140	42906702	155115728	1070	26757										
SNRK	0	genome.wustl.edu	37	chr3	43344694	43344694	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttttcttctgttggaccaGcatggcaggatttaagcgag	11	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	43344694	43344694	G	A	SNP	SNRK	ENST00000462810	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNRK	HGNC	ENSG00000163788	243	0	0	129	29	18.35	-	-	-	A	43344694	G	A	43344694	1	1	275	0	1	0	0	0	0	0	0	0	14940	986	34	4		4	SNRK	3	43344694	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	437992	43344694	154677736	1071	26758										
ANO10	0	genome.wustl.edu	37	chr3	43591293	43591293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggtgacattccaatcagCgcacagttagtgaccacaga	10	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	43591293	43591293	C	T	SNP	ANO10	ENST00000448045	human	ensembl	69_37n	-1	putative	missense	c.299	p.R100H	0.491	pfam_Anoctamin	pfam_Anoctamin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANO10	HGNC	ENSG00000160746	373	0	0	310	37	10.66	-	-	-	T	43591293	C	T	43591293	3	4	275	1	0	0	0	0	1	0	0	0	695	755	27	1	278	1	ANO10	3	43591293	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	246599	43591293	154431137	1072	26759										
ANO10	0	genome.wustl.edu	37	chr3	43641880	43641880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaacttagggcttaccatcAaaacctttgaagttctgtct	7	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	43641880	43641880	A	C	SNP	ANO10	ENST00000292246	human	ensembl	69_37n	-1	known	missense	c.333	p.F111L	0.001	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	668	0	0	462	78	14.44	-	-	-	C	43641880	A	C	43641880	3	2	275	1	0	0	0	0	1	0	0	0	695	127	5	5	1693	5	ANO10	3	43641880	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	50587	43641880	154380550	1073	26760										
ZNF445	0	genome.wustl.edu	37	chr3	44491964	44491964	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagccatgttcctataattCtccagcatcacatccctgta	5	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44491964	44491964	C	A	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.795	p.E265D	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	247	0	0	292	43	12.84	-	-	-	A	44491964	C	A	44491964	3	1	275	1	0	0	0	0	1	0	0	0	18014	912	32	2	2312	2	ZNF445	3	44491964	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	850084	44491964	153530466	1074	26761										
ZNF167	0	genome.wustl.edu	37	chr3	44612566	44612566	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaccttattatacaccagaGaattcacactggtgagaaac	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44612566	44612566	G	T	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.1964	p.R655I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	114	0	0	186	27	12.68	-	-	-	T	44612566	G	T	44612566	3	4	275	1	0	0	0	0	1	0	0	0	17837	942	33	2	1982	2	ZNF167	3	44612566	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	120602	44612566	153409864	1075	26762										
ZNF167	0	genome.wustl.edu	37	chr3	44612760	44612760	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaccggagagaaaccttatGaatgtagtgaatgtgggaaa	12	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44612760	44612760	G	T	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	nonsense	c.2158	p.E720*	0.681	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	176	0	0	200	71	26.1	-	-	-	T	44612760	G	T	44612760	4	4	275	1	0	0	0	0	0	1	0	0	17837	1291	45	2	2176	2	ZNF167	3	44612760	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	194	44612760	153409670	1076	26763										
ZNF660	0	genome.wustl.edu	37	chr3	44636460	44636460	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaggcttttacttctaatCgaaaccttgttgatcatcag	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44636460	44636460	C	T	SNP	ZNF660	ENST00000322734	human	ensembl	69_37n	1	known	nonsense	c.775	p.R259*	0.548	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF660	HGNC	ENSG00000144792	97	0	0	104	36	25.71	-	-	-	T	44636460	C	T	44636460	4	4	275	1	0	0	0	0	0	1	0	0	18166	876	31	1	777	1	ZNF660	3	44636460	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23700	44636460	153385970	1077	26764										
ZNF197	0	genome.wustl.edu	37	chr3	44673600	44673600	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttctccctcctcagattCtcctgcccctgaagcttctg	5	16	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44673600	44673600	C	A	SNP	ZNF197	ENST00000344387	human	ensembl	69_37n	1	known	missense	c.554	p.S185Y	0.551	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448	314	0	0	219	37	14.45	-	-	-	A	44673600	C	A	44673600	3	1	275	1	0	0	0	0	1	0	0	0	17855	913	32	2	564	2	ZNF197	3	44673600	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37140	44673600	153348830	1078	26765										
ZNF197	0	genome.wustl.edu	37	chr3	44685219	44685219	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctgattgaacatcaaaGaattcacagtggagaaaaaa	7	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44685219	44685219	G	T	SNP	ZNF197	ENST00000344387	human	ensembl	69_37n	1	known	missense	c.2597	p.R866I	0.982	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448	83	0	0	76	22	22.45	-	-	-	T	44685219	G	T	44685219	3	4	275	1	0	0	0	0	1	0	0	0	17855	942	33	2	2615	2	ZNF197	3	44685219	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11619	44685219	153337211	1079	26766										
ZNF502	0	genome.wustl.edu	37	chr3	44762762	44762762	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtccaactctctgcacacaGaaaaaatcttggaaatgtaa	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44762762	44762762	G	T	SNP	ZNF502	ENST00000296091	human	ensembl	69_37n	1	known	missense	c.453	p.Q151H	0.012	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653	128	0	0	104	21	16.8	-	-	-	T	44762762	G	T	44762762	3	4	275	1	0	0	0	0	1	0	0	0	18046	933	33	2	459	2	ZNF502	3	44762762	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77543	44762762	153259668	1080	26767										
KIF15	0	genome.wustl.edu	37	chr3	44847350	44847350	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctattaggaaaaggcagctaGaattggaatcagagcttcag	11	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	44847350	44847350	G	T	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	nonsense	c.1843	p.E615*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	134	0	0	82	12	12.77	-	-	-	T	44847350	G	T	44847350	4	4	275	1	0	0	0	0	0	1	0	0	8329	943	33	2	1905	2	KIF15	3	44847350	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84588	44847350	153175080	1081	26768										
FYCO1	0	genome.wustl.edu	37	chr3	46008073	46008073	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcctccactcgctcctttTccacggtcagtgcgcaaacc	6	19	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	46008073	46008073	T	G	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.2753	p.E918A	1.000	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	50	0	0	21	7	25	-	-	-	G	46008073	T	G	46008073	3	3	275	1	0	0	0	0	1	0	0	0	6174	1783	62	5	1727	5	FYCO1	3	46008073	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1160723	46008073	152014357	1082	26769										
CCR2	0	genome.wustl.edu	37	chr3	46399052	46399052	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgttctcggtttatcagaAataccaacgagagcggtgaa	10	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	46399052	46399052	A	C	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	1	known	missense	c.34	p.N12H	0.000	prints_Chemokine_CCR2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	532	0	0	438	78	15.12	-	-	-	C	46399052	A	C	46399052	3	2	275	1	0	0	0	0	1	0	0	0	2970	14	1	5	36	5	CCR2	3	46399052	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	390979	46399052	151623378	1083	26770										
CCR2	0	genome.wustl.edu	37	chr3	46399831	46399831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaacaccttccaggaattCttcggcctgagtaactgtga	9	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	46399831	46399831	C	A	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	1	known	missense	c.813	p.F271L	0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	212	0	0	231	47	16.91	-	-	-	A	46399831	C	A	46399831	3	1	275	1	0	0	0	0	1	0	0	0	2970	912	32	2	815	2	CCR2	3	46399831	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	779	46399831	151622599	1084	26771										
SETD2	0	genome.wustl.edu	37	chr3	47108598	47108598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgacttttctttggaattCgatatacctcctgcaaaaaa	5	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	47108598	47108598	C	T	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.6071	p.R2024Q	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	507	0	0	418	55	11.63	-	-	-	T	47108598	C	T	47108598	3	4	275	1	0	0	0	0	1	0	0	0	14219	884	31	1	1659	1	SETD2	3	47108598	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	708767	47108598	150913832	1085	26772										
SETD2	0	genome.wustl.edu	37	chr3	47162413	47162413	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggtatctcacaagaggaaGaaaaactcaattctgttttt	8	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	47162413	47162413	G	T	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.3713	p.S1238Y	0.991	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	97	0	0	98	16	14.04	-	-	-	T	47162413	G	T	47162413	3	4	275	1	0	0	0	0	1	0	0	0	14219	942	33	2	4057	2	SETD2	3	47162413	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	53815	47162413	150860017	1086	26773										
DHX30	0	genome.wustl.edu	37	chr3	47888784	47888784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggatgaatgcgcactcGatttggaccttgtgactgat	12	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	47888784	47888784	G	A	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	missense	c.1951	p.D651N	0.989	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	111	0	0	69	10	12.66	-	-	-	A	47888784	G	A	47888784	3	1	275	1	0	0	0	0	1	0	0	0	4540	1058	37	1	2000	1	DHX30	3	47888784	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	726371	47888784	150133646	1087	26774										
FBXW12	0	genome.wustl.edu	37	chr3	48436111	48436111	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcattctggtgatgtattCtttgaatacgtaatatggaa	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	48436111	48436111	C	A	SNP	FBXW12	ENST00000296438	human	ensembl	69_37n	1	known	missense	c.1382	p.S461Y	0.916	NULL	pfam_F-box_dom_cyclin-like,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXW12	HGNC	ENSG00000164049	239	0	0	177	36	16.9	-	-	-	A	48436111	C	A	48436111	3	1	275	1	0	0	0	0	1	0	0	0	5811	913	32	2	1457	2	FBXW12	3	48436111	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	547327	48436111	149586319	1088	26775										
PLXNB1	0	genome.wustl.edu	37	chr3	48463207	48463207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctcgagcactcagaacggCgactgcacctgggcgagatg	13	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	48463207	48463207	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	missense	c.1529	p.R510H	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	75	0	0	33	9	21.43	-	-	-	T	48463207	C	T	48463207	3	4	275	1	0	0	0	0	1	0	0	0	12197	768	27	1	5006	1	PLXNB1	3	48463207	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27096	48463207	149559223	1089	26776										
UCN2	0	genome.wustl.edu	37	chr3	48600454	48600454	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcggggagtggtctggggaGaattctgagggcggagctgg	22	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	48600454	48600454	G	A	SNP	UCN2	ENST00000273610	human	ensembl	69_37n	-1	known	missense	c.104	p.S35F	0.000	NULL	pfam_Urocortin_II/III	-	no_errors	UCN2	HGNC	ENSG00000145040	43	0	0	26	5	16.13	-	-	-	A	48600454	G	A	48600454	3	1	275	1	0	0	0	0	1	0	0	0	17025	942	33	2	238	2	UCN2	3	48600454	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	137247	48600454	149421976	1090	26777										
CELSR3	0	genome.wustl.edu	37	chr3	48697349	48697349	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatggctcctgagtctgcatCaatgcggaactggggcaggt	14	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	48697349	48697349	C	A	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.2719	p.D907Y	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	110	0	0	63	11	14.86	-	-	-	A	48697349	C	A	48697349	3	1	275	1	0	0	0	0	1	0	0	0	3252	826	29	2	7359	2	CELSR3	3	48697349	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	96895	48697349	149325081	1091	26778										
CCDC71	0	genome.wustl.edu	37	chr3	49200430	49200431	+	Frame_Shift_Ins	INS	-	-	G													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcggggcccaagccgtgttINSctcttcttgggaggaagatc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	49200430	49200431	-	G	INS	CCDC71	ENST00000321895	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1212_1211	p.R404fs	0.102:0.861	NULL	NULL	-	no_errors	CCDC71	HGNC	ENSG00000177352	61	0	0	53	14	20.9	-	-	-	G	49200431	-	G	49200430	7	5	275	1	0	1	1	0	0	0	0	0	2871	1780	62	0	195	0	CCDC71	3	49200430	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	503081	49200430	148822000	1092	26779										
USP4	0	genome.wustl.edu	37	chr3	49362185	49362185	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcttcattttgaggctcAattactagcacctgagtgaa	7	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	49362185	49362185	A	G	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	silent	c.645	p.I215	0.998	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	100	0	0	77	25	24.27	-	-	-	G	49362185	A	G	49362185	2	3	275	1	0	0	0	0	0	0	0	1	17168	126	5	5		5	USP4	3	49362185	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	161755	49362185	148660245	1093	26780										
BSN	0	genome.wustl.edu	37	chr3	49679770	49679770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacatgaccactgcacctCgctccaagagccagcagcag	10	15	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	49679770	49679770	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.703	p.R235C	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	51	0	0	28	4	12.5	-	-	-	T	49679770	C	T	49679770	3	4	275	1	0	0	0	0	1	0	0	0	1538	884	31	1	713	1	BSN	3	49679770	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	317585	49679770	148342660	1094	26781										
RNF123	0	genome.wustl.edu	37	chr3	49753111	49753111	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgtcctcaatcagctcaaCtgggccttctctgaattcat	7	13	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	49753111	49753111	C	A	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.3114	p.N1038K	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	54	0	0	21	8	27.59	-	-	-	A	49753111	C	A	49753111	3	1	275	1	0	0	0	0	1	0	0	0	13519	564	20	4	3236	4	RNF123	3	49753111	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73341	49753111	148269319	1095	26782										
ZMYND10	0	genome.wustl.edu	37	chr3	50379984	50379984	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatgccaacggctgccctcGaactgctgcagcttgcctgg	12	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	50379984	50379984	G	A	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	silent	c.717	p.F239	1.000	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	60	0	0	36	10	21.28	-	-	-	A	50379984	G	A	50379984	2	1	275	1	0	0	0	0	0	0	0	1	17801	1049	37	1		1	ZMYND10	3	50379984	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	626873	50379984	147642446	1096	26783										
DOCK3	0	genome.wustl.edu	37	chr3	51184042	51184042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacccagagaagatagaacGaatgtgtgccctttttacag	10	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	51184042	51184042	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.809	p.R270Q	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	808	1	0.12	547	199	26.53	-	-	-	A	51184042	G	A	51184042	3	1	275	1	0	0	0	0	1	0	0	0	4723	1058	37	1	847	1	DOCK3	3	51184042	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	804058	51184042	146838388	1097	26784										
DOCK3	0	genome.wustl.edu	37	chr3	51265432	51265432	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaaggacaaaggggaaaaGaaactctttggctttgcatt	11	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	51265432	51265432	G	T	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.1560	p.K520N	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	248	0	0	224	25	10.04	-	-	-	T	51265432	G	T	51265432	3	4	275	1	0	0	0	0	1	0	0	0	4723	933	33	2	1626	2	DOCK3	3	51265432	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	81390	51265432	146756998	1098	26785										
DOCK3	0	genome.wustl.edu	37	chr3	51387778	51387778	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacgcctggagcctgagttCtttcgggtcggcttctatgg	13	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	51387778	51387778	C	A	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.4062	p.F1354L	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	433	0	0	282	89	23.99	-	-	-	A	51387778	C	A	51387778	3	1	275	1	0	0	0	0	1	0	0	0	4723	912	32	2	4220	2	DOCK3	3	51387778	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122346	51387778	146634652	1099	26786										
IQCF1	0	genome.wustl.edu	37	chr3	51929353	51929353	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttttggttttctgggggCtttcaagaaaaaaagaggga	12	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	51929353	51929353	C	A	SNP	IQCF1	ENST00000310914	human	ensembl	69_37n	-1	known	splice_site	c.172-1	e4-1	0.025	-	-	-	no_errors	IQCF1	HGNC	ENSG00000173389	60	0	0	41	17	29.31	-	-	-	A	51929353	C	A	51929353	5	1	275	1	0	0	0	0	0	0	1	0	7861	811	28	4	450	4	IQCF1	3	51929353	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	541575	51929353	146093077	1100	26787										
GLYCTK	0	genome.wustl.edu	37	chr3	52326693	52326693	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaggaagatgcacagctcCatgagctggcagctgagctt	14	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52326693	52326693	C	A	SNP	GLYCTK	ENST00000436784	human	ensembl	69_37n	1	known	missense	c.1123	p.H375N	0.009	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237	22	0	0	14	5	26.32	-	-	-	A	52326693	C	A	52326693	3	1	275	1	0	0	0	0	1	0	0	0	6534	594	21	4	1137	4	GLYCTK	3	52326693	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397340	52326693	145695737	1101	26788										
DNAH1	0	genome.wustl.edu	37	chr3	52425047	52425047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattgaccctcagagccagGccaacaaatggatcaagaac	8	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52425047	52425047	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.9718	p.A3240T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	68	0	0	39	9	18.75	-	-	-	A	52425047	G	A	52425047	3	1	275	1	0	0	0	0	1	0	0	0	4633	1203	42	4	9956	4	DNAH1	3	52425047	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98354	52425047	145597383	1102	26789										
SEMA3G	0	genome.wustl.edu	37	chr3	52469831	52469831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggttggcgaagccaatgaGctgcaggatgtccttgtacc	13	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52469831	52469831	G	A	SNP	SEMA3G	ENST00000231721	human	ensembl	69_37n	-1	known	missense	c.2137	p.L713F	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3G	HGNC	ENSG00000010319	57	0	0	32	5	13.51	-	-	-	A	52469831	G	A	52469831	3	1	275	1	0	0	0	0	1	0	0	0	14118	971	34	4	215	4	SEMA3G	3	52469831	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44784	52469831	145552599	1103	26790										
NT5DC2	0	genome.wustl.edu	37	chr3	52561686	52561686	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctggacaatgaccacatcGaagagctggcgccaatcggg	13	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52561686	52561686	G	A	SNP	NT5DC2	ENST00000489316	human	ensembl	69_37n	-1	novel	nonsense	c.637	p.R213*	0.685	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5DC2	HGNC	ENSG00000168268	28	0	0	18	5	21.74	-	-	-	A	52561686	G	A	52561686	4	1	275	1	0	0	0	0	0	1	0	0	10764	1049	37	1	713	1	NT5DC2	3	52561686	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	91855	52561686	145460744	1104	26791										
GLT8D1	0	genome.wustl.edu	37	chr3	52731899	52731899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctcccatctactgcatgtCggagagcatttgggacaaag	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52731899	52731899	C	T	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.167	p.R56Q	0.000	NULL	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	137	0	0	93	20	17.7	-	-	-	T	52731899	C	T	52731899	3	4	275	1	0	0	0	0	1	0	0	0	6521	884	31	1	976	1	GLT8D1	3	52731899	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	170213	52731899	145290531	1105	26792										
SFMBT1	0	genome.wustl.edu	37	chr3	52954561	52954561	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagacagatacctcgtgctCggcgaggagtgctgaggggg	17	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	52954561	52954561	C	T	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455Q	1.000	pfam_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	157	0	0	107	19	15.08	-	-	-	T	52954561	C	T	52954561	3	4	275	1	0	0	0	0	1	0	0	0	14245	884	31	1	1276	1	SFMBT1	3	52954561	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	222662	52954561	145067869	1106	26793										
CACNA1D	0	genome.wustl.edu	37	chr3	53757499	53757499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttggctctgttcacctgcGagatgctggtaaaaatgtac	10	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	53757499	53757499	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.1765	p.E589K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	259	0	0	243	37	13.21	-	-	-	A	53757499	G	A	53757499	3	1	275	1	0	0	0	0	1	0	0	0	2566	1059	37	1	1927	1	CACNA1D	3	53757499	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	802938	53757499	144264931	1107	26794										
ACTR8	0	genome.wustl.edu	37	chr3	53907117	53907117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcaggagaatcaggatgtCgaatctgaaactcatggtcc	13	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	53907117	53907117	C	T	SNP	ACTR8	ENST00000335754	human	ensembl	69_37n	-1	known	missense	c.1103	p.R368Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR8	HGNC	ENSG00000113812	130	0	0	64	12	15.79	-	-	-	T	53907117	C	T	53907117	3	4	275	1	0	0	0	0	1	0	0	0	217	884	31	1	791	1	ACTR8	3	53907117	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	149618	53907117	144115313	1108	26795										
ERC2	0	genome.wustl.edu	37	chr3	56026099	56026099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttacctctccagttctgcGatcttcttgtccttgtcatt	5	12	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	56026099	56026099	G	A	SNP	ERC2	ENST00000492584	human	ensembl	69_37n	-1	known	missense	c.1193	p.S398L	0.861	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERC2	HGNC	ENSG00000187672	199	0	0	143	34	19.21	-	-	-	A	56026099	G	A	56026099	3	1	275	1	0	0	0	0	1	0	0	0	5248	1048	37	1	650	1	ERC2	3	56026099	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2118982	56026099	141996331	1109	26796										
ERC2	0	genome.wustl.edu	37	chr3	56207538	56207538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccggctgaagttggcttcttCggtgcaattcctggggagga	15	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	56207538	56207538	C	T	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	missense	c.1085	p.R362Q	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	204	1	0.49	125	120	48.19	-	-	-	T	56207538	C	T	56207538	3	4	275	1	0	0	0	0	1	0	0	0	5248	884	31	1	1834	1	ERC2	3	56207538	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	181439	56207538	141814892	1110	26797										
HESX1	0	genome.wustl.edu	37	chr3	57232295	57232295	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctctatgggaccttttcAgttttgcacgccgattttga	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	57232295	57232295	A	C	SNP	HESX1	ENST00000295934	human	ensembl	69_37n	-1	known	missense	c.488	p.L163R	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HESX1	HGNC	ENSG00000163666	193	0	0	122	66	35.11	-	-	-	C	57232295	A	C	57232295	3	2	275	1	0	0	0	0	1	0	0	0	7123	188	7	5	73	5	HESX1	3	57232295	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1024757	57232295	140790135	1111	26798										
DNAH12	0	genome.wustl.edu	37	chr3	57391427	57391427	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagatactgtgaaatgattCtttaaaatggtcctttataa	6	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	57391427	57391427	C	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	nonsense	c.6472	p.E2158*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	144	0	0	100	12	10.71	-	-	-	A	57391427	C	A	57391427	4	1	275	1	0	0	0	0	0	1	0	0	4636	922	32	2	2882	2	DNAH12	3	57391427	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	159132	57391427	140631003	1112	26799										
DNAH12	0	genome.wustl.edu	37	chr3	57405200	57405200	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatctcctaaattagtatTtttaattaattcattccaat	1	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	57405200	57405200	T	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.5551	p.N1851H	0.981	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	134	0	0	155	24	13.33	-	-	-	G	57405200	T	G	57405200	3	3	275	1	0	0	0	0	1	0	0	0	4636	1841	64	5	3819	5	DNAH12	3	57405200	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	13773	57405200	140617230	1113	26800										
FAM116A	0	genome.wustl.edu	37	chr3	57616472	57616472	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatccaatcgccttttattCtagaggttagctgaggtcct	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	57616472	57616472	C	A	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1487	p.R496I	1.000	pfam_Afi1_N	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	271	1	0.37	172	61	26.18	-	-	-	A	57616472	C	A	57616472	3	1	275	1	0	0	0	0	1	0	0	0	5447	913	32	2	355	2	FAM116A	3	57616472	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	211272	57616472	140405958	1114	26801										
PXK	0	genome.wustl.edu	37	chr3	58351613	58351613	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttaaggaatatattattCgagtgcaaagaggaatttct	8	3	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	58351613	58351613	C	T	SNP	PXK	ENST00000356151	human	ensembl	69_37n	1	known	nonsense	c.115	p.R39*	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PXK	HGNC	ENSG00000168297	196	0	0	159	23	12.64	-	-	-	T	58351613	C	T	58351613	4	4	275	1	0	0	0	0	0	1	0	0	12932	876	31	1	121	1	PXK	3	58351613	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	735141	58351613	139670817	1115	26802										
FAM107A	0	genome.wustl.edu	37	chr3	58555591	58555591	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggatctccgagtacatggcGgctgtagagatgggcagagg	17	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	58555591	58555591	G	A	SNP	FAM107A	ENST00000474531	human	ensembl	69_37n	-1	putative	silent	c.90	p.A30	0.783	NULL	pfam_DUF1151	-	no_errors	FAM107A	HGNC	ENSG00000168309	94	0	0	68	17	20	-	-	-	A	58555591	G	A	58555591	2	1	275	1	0	0	0	0	0	0	0	1	5429	1130	39	1		1	FAM107A	3	58555591	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	203978	58555591	139466839	1116	26803										
C3orf67	0	genome.wustl.edu	37	chr3	58870322	58870322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaattttatttcagtttggcGaagtttagtcatgtttagca	9	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	58870322	58870322	G	A	SNP	C3orf67	ENST00000482387	human	ensembl	69_37n	-1	known	missense	c.289	p.R97C	0.977	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689	173	0	0	112	23	17.04	-	-	-	A	58870322	G	A	58870322	3	1	275	1	0	0	0	0	1	0	0	0	2261	1058	37	1	1442	1	C3orf67	3	58870322	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	314731	58870322	139152108	1117	26804										
CADPS	0	genome.wustl.edu	37	chr3	62385187	62385187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctccacagtgagacggttcCggatcgtttcataggtcttg	11	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	62385187	62385187	C	T	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3956	p.R1319Q	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	256	0	0	233	28	10.73	-	-	-	T	62385187	C	T	62385187	3	4	275	1	0	0	0	0	1	0	0	0	2595	652	23	1	109	1	CADPS	3	62385187	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3514865	62385187	135637243	1118	26805										
PSMD6	0	genome.wustl.edu	37	chr3	63999218	63999218	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatgcatgaattctcatttCtcttacatagtatcgataat	5	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	63999218	63999218	C	A	SNP	PSMD6	ENST00000295901	human	ensembl	69_37n	-1	known	nonsense	c.892	p.E298*	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD6	HGNC	ENSG00000163636	218	0	0	162	22	11.96	-	-	-	A	63999218	C	A	63999218	4	1	275	1	0	0	0	0	0	1	0	0	12782	922	32	2	289	2	PSMD6	3	63999218	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1614031	63999218	134023212	1119	26806										
PRICKLE2	0	genome.wustl.edu	37	chr3	64132656	64132656	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctcttcctcttcctcctCatatttggggacttggatgc	7	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	64132656	64132656	C	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	nonsense	c.1510	p.E504*	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	80	0	0	32	12	27.27	-	-	-	A	64132656	C	A	64132656	4	1	275	1	0	0	0	0	0	1	0	0	12568	835	29	2	1032	2	PRICKLE2	3	64132656	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	133438	64132656	133889774	1120	26807										
TMF1	0	genome.wustl.edu	37	chr3	69088027	69088027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagggcagcctgaatacttCggttcttttcttcaagttca	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	69088027	69088027	C	T	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	missense	c.1970	p.R657Q	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	346	1	0.29	249	51	17	-	-	-	T	69088027	C	T	69088027	3	4	275	1	0	0	0	0	1	0	0	0	16323	884	31	1	1364	1	TMF1	3	69088027	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4955371	69088027	128934403	1121	26808										
GXYLT2	0	genome.wustl.edu	37	chr3	73004428	73004428	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgctttgctaggcatcctttCtatggctctgcaggagttaa	10	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	73004428	73004428	C	A	SNP	GXYLT2	ENST00000389617	human	ensembl	69_37n	1	known	missense	c.780	p.F260L	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT2	HGNC	ENSG00000172986	100	0	0	86	14	14	-	-	-	A	73004428	C	A	73004428	3	1	275	1	0	0	0	0	1	0	0	0	6955	912	32	2	794	2	GXYLT2	3	73004428	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3916401	73004428	125018002	1122	26809										
EBLN2	0	genome.wustl.edu	37	chr3	73111483	73111483	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagctatctgggaaaaacaGacagtatccactggatgcat	10	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	73111483	73111483	G	T	SNP	EBLN2	ENST00000533473	human	ensembl	69_37n	1	known	missense	c.251	p.R84I	0.005	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423	108	0	0	84	33	28.21	-	-	-	T	73111483	G	T	73111483	3	4	275	1	0	0	0	0	1	0	0	0	4919	942	33	2	253	2	EBLN2	3	73111483	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	107055	73111483	124910947	1123	26810										
EBLN2	0	genome.wustl.edu	37	chr3	73111684	73111684	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgagcaagaggtctaataCtgtggttgggaatgagaacg	15	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	73111684	73111684	C	A	SNP	EBLN2	ENST00000533473	human	ensembl	69_37n	1	known	missense	c.452	p.T151N	0.001	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423	128	0	0	104	14	11.86	-	-	-	A	73111684	C	A	73111684	3	1	275	1	0	0	0	0	1	0	0	0	4919	565	20	4	454	4	EBLN2	3	73111684	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	201	73111684	124910746	1124	26811										
CNTN3	0	genome.wustl.edu	37	chr3	74347205	74347205	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatatggtgaatatggcacGatgctttcattcctaaagac	8	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	74347205	74347205	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	silent	c.2304	p.I768	0.575	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	335	0	0	249	35	12.2	-	-	-	A	74347205	G	A	74347205	2	1	275	1	0	0	0	0	0	0	0	1	3672	1048	37	1		1	CNTN3	3	74347205	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1235521	74347205	123675225	1125	26812										
CNTN3	0	genome.wustl.edu	37	chr3	74535628	74535628	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaaactgaagtttggcttCtctgctgacaattgttccaa	9	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	74535628	74535628	C	A	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	nonsense	c.337	p.E113*	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	600	0	0	214	81	27.36	-	-	-	A	74535628	C	A	74535628	4	1	275	1	0	0	0	0	0	1	0	0	3672	922	32	2	2829	2	CNTN3	3	74535628	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	188423	74535628	123486802	1126	26813										
ROBO2	0	genome.wustl.edu	37	chr3	77572051	77572051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgctacactcaccgtccGaggtaagagatttaagatgt	9	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	77572051	77572051	G	A	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.932	p.R311Q	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	335	0	0	195	37	15.88	-	-	-	A	77572051	G	A	77572051	3	1	275	1	0	0	0	0	1	0	0	0	13600	1058	37	1	956	1	ROBO2	3	77572051	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3036423	77572051	120450379	1127	26814										
ROBO2	0	genome.wustl.edu	37	chr3	77614119	77614119	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcagccaatcagtgagcaAcagctggcagaccgtggcaa	11	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	77614119	77614119	A	G	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1697	p.N566S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	157	0	0	80	16	16.67	-	-	-	G	77614119	A	G	77614119	3	3	275	1	0	0	0	0	1	0	0	0	13600	43	2	5	1745	5	ROBO2	3	77614119	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	42068	77614119	120408311	1128	26815										
ROBO1	0	genome.wustl.edu	37	chr3	78649330	78649330	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcatttctgcaatatttCttcgacctacatttgcttgt	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	78649330	78649330	C	A	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.4874	p.R1625I	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	1070	1	0.09	728	124	14.55	-	-	-	A	78649330	C	A	78649330	3	1	275	1	0	0	0	0	1	0	0	0	13599	913	32	2	89	2	ROBO1	3	78649330	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1035211	78649330	119373100	1129	26816										
C3orf38	0	genome.wustl.edu	37	chr3	88205420	88205420	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgtcactagtaaaagaaGaatttctttttctcagcccc	6	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	88205420	88205420	G	T	SNP	C3orf38	ENST00000318887	human	ensembl	69_37n	1	known	nonsense	c.625	p.E209*	1.000	NULL	NULL	-	no_errors	C3orf38	HGNC	ENSG00000179021	120	0	0	79	10	11.24	-	-	-	T	88205420	G	T	88205420	4	4	275	1	0	0	0	0	0	1	0	0	2248	943	33	2	635	2	C3orf38	3	88205420	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9556090	88205420	109817010	1130	26817										
EPHA3	0	genome.wustl.edu	37	chr3	89480310	89480310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcttcccagaaacacgatgCccagtttactgtcattcagc	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	89480310	89480310	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.2147	p.A716V	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	168	0	0	128	24	15.69	-	-	-	T	89480310	C	T	89480310	3	4	275	1	0	0	0	0	1	0	0	0	5205	739	26	4	2223	4	EPHA3	3	89480310	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1274890	89480310	108542120	1131	26818										
PROS1	0	genome.wustl.edu	37	chr3	93605277	93605277	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttaaaaaggggtccaggtTtatttatatccatcacagct	8	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	93605277	93605277	T	G	SNP	PROS1	ENST00000394236	human	ensembl	69_37n	-1	known	missense	c.1226	p.K409T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	416	0	0	223	96	30.09	-	-	-	G	93605277	T	G	93605277	3	3	275	1	0	0	0	0	1	0	0	0	12639	1841	64	5	824	5	PROS1	3	93605277	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4124967	93605277	104417153	1132	26819										
DHFRL1	0	genome.wustl.edu	37	chr3	93780121	93780121	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtggaggttccttgagttCtctgctgagaactaaattaa	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	93780121	93780121	C	A	SNP	DHFRL1	ENST00000314636	human	ensembl	69_37n	-1	known	nonsense	c.235	p.E79*	1.000	pfam_DHFR_dom,superfamily_DHFR-like_dom	pfam_DHFR_dom,superfamily_DHFR-like_dom,prints_DHFR	-	no_errors	DHFRL1	HGNC	ENSG00000178700	210	1	0.47	201	28	12.23	-	-	-	A	93780121	C	A	93780121	4	1	275	1	0	0	0	0	0	1	0	0	4518	922	32	2	332	2	DHFRL1	3	93780121	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	174844	93780121	104242309	1133	26820										
EPHA6	0	genome.wustl.edu	37	chr3	97167515	97167515	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatttcacatccgagtgaGaactgcgacaggatacagtg	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97167515	97167515	G	T	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	1	known	missense	c.1835	p.R612I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	158	0	0	77	40	34.19	-	-	-	T	97167515	G	T	97167515	3	4	275	1	0	0	0	0	1	0	0	0	5208	942	33	2	1861	2	EPHA6	3	97167515	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3387394	97167515	100854915	1134	26821										
EPHA6	0	genome.wustl.edu	37	chr3	97202874	97202874	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggagattgatccctcaaGaattcgtattgagagagtca	10	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97202874	97202874	G	T	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	1	known	missense	c.2171	p.R724I	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	262	0	0	118	60	33.71	-	-	-	T	97202874	G	T	97202874	3	4	275	1	0	0	0	0	1	0	0	0	5208	942	33	2	2277	2	EPHA6	3	97202874	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35359	97202874	100819556	1135	26822										
EPHA6	0	genome.wustl.edu	37	chr3	97251321	97251321	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagaagagattttctaagaGaagctagtatcatgggccag	11	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97251321	97251321	G	T	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	1	known	nonsense	c.2320	p.E774*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	208	0	0	94	41	30.37	-	-	-	T	97251321	G	T	97251321	4	4	275	1	0	0	0	0	0	1	0	0	5208	943	33	2	2430	2	EPHA6	3	97251321	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48447	97251321	100771109	1136	26823										
CRYBG3	0	genome.wustl.edu	37	chr3	97599945	97599945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatgagaaaccacatttccGaggtcagaaatgtgtgctag	10	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97599945	97599945	G	A	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1190	p.R397Q	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	208	0	0	154	26	14.44	-	-	-	A	97599945	G	A	97599945	3	1	275	1	0	0	0	0	1	0	0	0	3943	1058	37	1	1204	1	CRYBG3	3	97599945	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	348624	97599945	100422485	1137	26824										
CRYBG3	0	genome.wustl.edu	37	chr3	97614824	97614824	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggttgcctatgaaaaagaAcattttaaaggccagcagtt	10	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97614824	97614824	A	G	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	silent	c.1752	p.E584	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	430	0	0	219	36	14.06	-	-	-	G	97614824	A	G	97614824	2	3	275	1	0	0	0	0	0	0	0	1	3943	40	2	5		5	CRYBG3	3	97614824	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	14879	97614824	100407606	1138	26825										
GABRR3	0	genome.wustl.edu	37	chr3	97744433	97744433	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaatccaggtctcattgcGaaatcgttgtcctctatatg	7	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97744433	97744433	G	A	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	silent	c.216	p.F72	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	525	0	0	341	53	13.35	-	-	-	A	97744433	G	A	97744433	2	1	275	1	0	0	0	0	0	0	0	1	6227	1049	37	1		1	GABRR3	3	97744433	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	129609	97744433	100277997	1139	26826										
OR5AC2	0	genome.wustl.edu	37	chr3	97806900	97806900	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatttatttacagcttgaGaaataaaaaagtcatgcatg	6	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97806900	97806900	G	T	SNP	OR5AC2	ENST00000358642	human	ensembl	69_37n	1	known	missense	c.884	p.R295I	0.910	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578	185	0	0	106	15	12.4	-	-	-	T	97806900	G	T	97806900	3	4	275	1	0	0	0	0	1	0	0	0	11214	942	33	2	886	2	OR5AC2	3	97806900	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	62467	97806900	100215530	1140	26827										
OR5H1	0	genome.wustl.edu	37	chr3	97851695	97851695	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattgctgtcatctggaaaGaccctcaccttcatatccca	6	13	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97851695	97851695	G	T	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.154	p.D52Y	0.896	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	431	0	0	200	60	23.08	-	-	-	T	97851695	G	T	97851695	3	4	275	1	0	0	0	0	1	0	0	0	11232	942	33	2	156	2	OR5H1	3	97851695	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44795	97851695	100170735	1141	26828										
OR5H1	0	genome.wustl.edu	37	chr3	97851835	97851835	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatctctctctgaatgcaaGatacagtttttttcgtttgc	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97851835	97851835	G	T	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.294	p.K98N	0.457	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	427	0	0	231	60	20.62	-	-	-	T	97851835	G	T	97851835	3	4	275	1	0	0	0	0	1	0	0	0	11232	933	33	2	296	2	OR5H1	3	97851835	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	140	97851835	100170595	1142	26829										
OR5H1	0	genome.wustl.edu	37	chr3	97852292	97852292	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcttctctgtctctttaTactatggaccccttctcttc	3	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97852292	97852292	T	A	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.751	p.Y251N	0.034	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	729	0	0	412	55	11.75	-	-	-	A	97852292	T	A	97852292	3	1	275	1	0	0	0	0	1	0	0	0	11232	1406	49	5	753	5	OR5H1	3	97852292	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	457	97852292	100170138	1143	26830										
OR5H14	0	genome.wustl.edu	37	chr3	97868452	97868452	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtggatgctttgttatcaTcctcagtgactctgaagatg	10	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	97868452	97868452	T	G	SNP	OR5H14	ENST00000437310	human	ensembl	69_37n	1	known	missense	c.223	p.S75A	0.452	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032	615	0	0	383	144	27.27	-	-	-	G	97868452	T	G	97868452	3	3	275	1	0	0	0	0	1	0	0	0	11233	1435	50	5	225	5	OR5H14	3	97868452	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	16160	97868452	100153978	1144	26831										
C3orf26	0	genome.wustl.edu	37	chr3	99886630	99886630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaccacagtgagaagaaatCggtcctgatgctgatcatct	10	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	99886630	99886630	C	T	SNP	C3orf26	ENST00000421999	human	ensembl	69_37n	1	known	missense	c.464	p.S155L	0.996	pfam_DNA/RNA_helicase_DEAD/DEAH_N	pfam_DNA/RNA_helicase_DEAD/DEAH_N	-	no_errors	C3orf26	HGNC	ENSG00000184220	453	0	0	244	84	25.38	-	-	-	T	99886630	C	T	99886630	3	4	275	1	0	0	0	0	1	0	0	0	2238	893	31	1	500	1	C3orf26	3	99886630	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2018178	99886630	98135800	1145	26832										
TMEM45A	0	genome.wustl.edu	37	chr3	100295903	100295903	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctagataaaccttttcttTtttacattgttcttggtttt	4	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	100295903	100295903	T	G	SNP	TMEM45A	ENST00000488904	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.153	-	-	-	no_errors	TMEM45A	HGNC	ENSG00000181458	173	0	0	119	28	18.92	-	-	-	G	100295903	T	G	100295903	1	3	275	0	1	0	0	0	0	0	0	0	16264	1856	64	5		5	TMEM45A	3	100295903	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	409273	100295903	97726527	1146	26833										
GPR128	0	genome.wustl.edu	37	chr3	100354654	100354654	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagatattcaacacttccaGaaatgcttcacctgaggtaa	6	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	100354654	100354654	G	T	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	missense	c.581	p.R194I	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	172	0	0	103	28	21.37	-	-	-	T	100354654	G	T	100354654	3	4	275	1	0	0	0	0	1	0	0	0	6691	942	33	2	599	2	GPR128	3	100354654	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58751	100354654	97667776	1147	26834										
TFG	0	genome.wustl.edu	37	chr3	100467135	100467135	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgccacagcagtaccaggcGagcaattatcctgcacaaac	8	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	100467135	100467135	G	A	SNP	TFG	ENST00000240851	human	ensembl	69_37n	1	known	silent	c.963	p.A321	1.000	NULL	pfam_OPR_PB1,smart_OPR_PB1	-	no_errors	TFG	HGNC	ENSG00000114354	151	0	0	102	15	12.71	-	-	-	A	100467135	G	A	100467135	2	1	275	1	0	0	0	0	0	0	0	1	15901	1045	37	1		1	TFG	3	100467135	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	112481	100467135	97555295	1148	26835										
IMPG2	0	genome.wustl.edu	37	chr3	100964785	100964785	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagagctgaggcccatcttCgagggaaaggctaatttgtg	14	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	100964785	100964785	C	T	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	silent	c.1404	p.S468	0.003	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	303	0	0	127	48	27.43	-	-	-	T	100964785	C	T	100964785	2	4	275	1	0	0	0	0	0	0	0	1	7783	871	31	1		1	IMPG2	3	100964785	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	497650	100964785	97057645	1149	26836										
SENP7	0	genome.wustl.edu	37	chr3	101056428	101056428	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaagctactaaaaatgTgacttcgttcaacaagttca	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	101056428	101056428	T	G	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	missense	c.2405	p.H802P	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	298	0	0	202	28	12.17	-	-	-	G	101056428	T	G	101056428	3	3	275	1	0	0	0	0	1	0	0	0	14139	1696	59	5	779	5	SENP7	3	101056428	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	91643	101056428	96966002	1150	26837										
SENP7	0	genome.wustl.edu	37	chr3	101083788	101083788	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agattgtaacttaagaatttCtgaacttttatgttcaacag	6	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	101083788	101083788	C	A	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	nonsense	c.1366	p.E456*	0.859	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	146	0	0	98	30	23.44	-	-	-	A	101083788	C	A	101083788	4	1	275	1	0	0	0	0	0	1	0	0	14139	922	32	2	1846	2	SENP7	3	101083788	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27360	101083788	96938642	1151	26838										
ZBTB11	0	genome.wustl.edu	37	chr3	101370392	101370392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatatgtttacggagtgttCgagcatctatgtaggcttcg	11	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	101370392	101370392	C	T	SNP	ZBTB11	ENST00000312938	human	ensembl	69_37n	-1	known	missense	c.2780	p.R927Q	0.971	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422	97	0	0	97	12	11.01	-	-	-	T	101370392	C	T	101370392	3	4	275	1	0	0	0	0	1	0	0	0	17620	884	31	1	385	1	ZBTB11	3	101370392	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	286604	101370392	96652038	1152	26839										
RPL24	0	genome.wustl.edu	37	chr3	101401630	101401630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacctgatagcttgttctCgttgagcctttctaacttca	6	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	101401630	101401630	C	T	SNP	RPL24	ENST00000394077	human	ensembl	69_37n	-1	known	missense	c.314	p.R105Q	1.000	NULL	pfam_Ribosomal_L24e_rel,smart_TRASH	-	no_errors	RPL24	HGNC	ENSG00000114391	171	0	0	91	30	24.79	-	-	-	T	101401630	C	T	101401630	3	4	275	1	0	0	0	0	1	0	0	0	13658	884	31	1	171	1	RPL24	3	101401630	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31238	101401630	96620800	1153	26840										
CEP97	0	genome.wustl.edu	37	chr3	101476833	101476833	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttatgggctgcaaatgaGaattctgttcaaatgatgag	10	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	101476833	101476833	G	T	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	1	known	missense	c.1383	p.E461D	0.983	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	119	1	0.83	113	15	11.72	-	-	-	T	101476833	G	T	101476833	3	4	275	1	0	0	0	0	1	0	0	0	3292	933	33	2	1417	2	CEP97	3	101476833	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75203	101476833	96545597	1154	26841										
ZPLD1	0	genome.wustl.edu	37	chr3	102171790	102171790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacatcagtgtctattgtgGagtgcaggctattacgatga	12	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	102171790	102171790	G	T	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	missense	c.182	p.G61V	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	66	0	0	49	7	12.5	-	-	-	T	102171790	G	T	102171790	3	4	275	1	0	0	0	0	1	0	0	0	18314	1174	41	2	192	2	ZPLD1	3	102171790	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	694957	102171790	95850640	1155	26842										
ALCAM	0	genome.wustl.edu	37	chr3	105243280	105243280	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaatgcaaggatcagtgatGaaaagagatttgtgtgcatg	13	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	105243280	105243280	G	T	SNP	ALCAM	ENST00000306107	human	ensembl	69_37n	1	known	nonsense	c.322	p.E108*	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ALCAM	HGNC	ENSG00000170017	355	1	0.28	214	73	25.44	-	-	-	T	105243280	G	T	105243280	4	4	275	1	0	0	0	0	0	1	0	0	487	1291	45	2	332	2	ALCAM	3	105243280	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3071490	105243280	92779150	1156	26843										
CBLB	0	genome.wustl.edu	37	chr3	105404165	105404165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatctgcccatactcttaccGaacaggaggttttacattat	6	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	105404165	105404165	G	A	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.2200	p.R734W	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	543	0	0	306	42	12.03	-	-	-	A	105404165	G	A	105404165	3	1	275	1	0	0	0	0	1	0	0	0	2726	1072	37	1	772	1	CBLB	3	105404165	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	160885	105404165	92618265	1157	26844										
CBLB	0	genome.wustl.edu	37	chr3	105421040	105421040	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgacatttgaactcgctgtGattccaggttttggagagcc	11	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	105421040	105421040	G	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	silent	c.1857	p.I619	0.978	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	194	0	0	137	41	22.91	-	-	-	T	105421040	G	T	105421040	2	4	275	1	0	0	0	0	0	0	0	1	2726	1280	45	2		2	CBLB	3	105421040	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16875	105421040	92601390	1158	26845										
CBLB	0	genome.wustl.edu	37	chr3	105586354	105586354	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatagcatcaataatacccAaaattcgaccttttcgggga	7	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	105586354	105586354	A	C	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.68	p.L23W	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	159	0	0	75	14	15.73	-	-	-	C	105586354	A	C	105586354	3	2	275	1	0	0	0	0	1	0	0	0	2726	131	5	5	2952	5	CBLB	3	105586354	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	165314	105586354	92436076	1159	26846										
CD47	0	genome.wustl.edu	37	chr3	107798856	107798856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaacacgatattttagctCgatgatcgtttcaccttctc	5	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	107798856	107798856	C	T	SNP	CD47	ENST00000361309	human	ensembl	69_37n	-1	known	missense	c.382	p.E128K	0.434	pfam_CD47_Vset	pfam_CD47_Vset,pfam_CD47_TM,pfscan_Ig-like	-	no_errors	CD47	HGNC	ENSG00000196776	468	2	0.42	351	122	25.79	-	-	-	T	107798856	C	T	107798856	3	4	275	1	0	0	0	0	1	0	0	0	3048	893	31	1	633	1	CD47	3	107798856	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2212502	107798856	90223574	1160	26847										
DZIP3	0	genome.wustl.edu	37	chr3	108388553	108388553	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgtcaaatccatgctaaaGataatgaaatcaagaacctt	6	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	108388553	108388553	G	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.2449	p.D817Y	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	562	0	0	378	65	14.67	-	-	-	T	108388553	G	T	108388553	3	4	275	1	0	0	0	0	1	0	0	0	4900	942	33	2	2531	2	DZIP3	3	108388553	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	589697	108388553	89633877	1161	26848										
DZIP3	0	genome.wustl.edu	37	chr3	108388567	108388567	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctaaagataatgaaatcaaGaaccttaaagagcaactttc	6	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	108388567	108388567	G	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.2463	p.K821N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	582	1	0.17	375	61	13.99	-	-	-	T	108388567	G	T	108388567	3	4	275	1	0	0	0	0	1	0	0	0	4900	933	33	2	2545	2	DZIP3	3	108388567	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14	108388567	89633863	1162	26849										
TRAT1	0	genome.wustl.edu	37	chr3	108568059	108568059	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatgaaagcccgaccagaGaaatctgtaaataagatgca	8	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	108568059	108568059	G	T	SNP	TRAT1	ENST00000295756	human	ensembl	69_37n	1	known	missense	c.261	p.E87D	0.645	NULL	NULL	-	no_errors	TRAT1	HGNC	ENSG00000163519	191	0	0	139	19	12.03	-	-	-	T	108568059	G	T	108568059	3	4	275	1	0	0	0	0	1	0	0	0	16562	933	33	2	279	2	TRAT1	3	108568059	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	179492	108568059	89454371	1163	26850										
MORC1	0	genome.wustl.edu	37	chr3	108754240	108754240	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttctttgatattgaaaaGaatttaaaggtttctccaca	6	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	108754240	108754240	G	T	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469Y	0.001	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	206	0	0	176	23	11.56	-	-	-	T	108754240	G	T	108754240	3	4	275	1	0	0	0	0	1	0	0	0	9773	942	33	2	1604	2	MORC1	3	108754240	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186181	108754240	89268190	1164	26851										
PHLDB2	0	genome.wustl.edu	37	chr3	111688723	111688723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaacgttggtttgtttttGatcggaacaagcgaacattc	9	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	111688723	111688723	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.3502	p.D1168N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	413	0	0	268	53	16.46	-	-	-	A	111688723	G	A	111688723	3	1	275	1	0	0	0	0	1	0	0	0	11926	1290	45	2	3645	2	PHLDB2	3	111688723	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2934483	111688723	86333707	1165	26852										
CCDC80	0	genome.wustl.edu	37	chr3	112328885	112328885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaataggcccagtcttcatCgttaggagcagagatcacca	10	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112328885	112328885	C	T	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.2365	p.D789N	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	249	0	0	141	50	26.04	-	-	-	T	112328885	C	T	112328885	3	4	275	1	0	0	0	0	1	0	0	0	2881	884	31	1	499	1	CCDC80	3	112328885	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	640162	112328885	85693545	1166	26853										
CD200R1	0	genome.wustl.edu	37	chr3	112666723	112666723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaaagcatgattctccttgCtagtttgcagcattaatgag	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112666723	112666723	C	T	SNP	CD200R1	ENST00000308611	human	ensembl	69_37n	-1	known	missense	c.116	p.S39N	0.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1	HGNC	ENSG00000163606	372	0	0	244	87	26.28	-	-	-	T	112666723	C	T	112666723	3	4	275	1	0	0	0	0	1	0	0	0	3010	797	28	4	1005	4	CD200R1	3	112666723	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	337838	112666723	85355707	1167	26854										
CD200R1	0	genome.wustl.edu	37	chr3	112693688	112693688	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagccctaggttagcagttCtccaagggcagagcatttct	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112693688	112693688	C	A	SNP	CD200R1	ENST00000308611	human	ensembl	69_37n	-1	known	missense	c.17	p.R6I	0.713	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1	HGNC	ENSG00000163606	1195	1	0.08	751	279	27.09	-	-	-	A	112693688	C	A	112693688	3	1	275	1	0	0	0	0	1	0	0	0	3010	913	32	2	1108	2	CD200R1	3	112693688	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26965	112693688	85328742	1168	26855										
C3orf17	0	genome.wustl.edu	37	chr3	112724438	112724438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctgtctccttaatggttCctgatgtactgtttttattt	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112724438	112724438	C	T	SNP	C3orf17	ENST00000314400	human	ensembl	69_37n	-1	known	missense	c.1649	p.G550E	0.006	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608	494	0	0	329	107	24.43	-	-	-	T	112724438	C	T	112724438	3	4	275	1	0	0	0	0	1	0	0	0	2230	855	30	2	58	2	C3orf17	3	112724438	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30750	112724438	85297992	1169	26856										
C3orf17	0	genome.wustl.edu	37	chr3	112724600	112724600	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttagggtagagatcagttCtatgcacagtacagtgtgag	13	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112724600	112724600	C	A	SNP	C3orf17	ENST00000314400	human	ensembl	69_37n	-1	known	missense	c.1487	p.R496I	0.001	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608	259	0	0	180	33	15.49	-	-	-	A	112724600	C	A	112724600	3	1	275	1	0	0	0	0	1	0	0	0	2230	913	32	2	220	2	C3orf17	3	112724600	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	162	112724600	85297830	1170	26857										
BOC	0	genome.wustl.edu	37	chr3	112997053	112997053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatgaagtggagatggcaGcttacaactgtgcgggagag	16	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	112997053	112997053	G	A	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	missense	c.1654	p.A552T	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	99	0	0	68	10	12.66	-	-	-	A	112997053	G	A	112997053	3	1	275	1	0	0	0	0	1	0	0	0	1486	971	34	4	1681	4	BOC	3	112997053	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	272453	112997053	85025377	1171	26858										
WDR52	0	genome.wustl.edu	37	chr3	113013534	113013534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgaaggtaaagaacatacCtgctgattctgtagtgtatt	9	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	113013534	113013534	C	T	SNP	WDR52	ENST00000461734	human	ensembl	69_37n	-1	known	missense	c.1235	p.R412K	1.000	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR52	HGNC	ENSG00000206530	298	1	0.33	198	64	24.43	-	-	-	T	113013534	C	T	113013534	3	4	275	1	0	0	0	0	1	0	0	0	17401	695	24	4	199	4	WDR52	3	113013534	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16481	113013534	85008896	1172	26859										
WDR52	0	genome.wustl.edu	37	chr3	113085110	113085110	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatttaggacatagactcGaattgctccatttttcattc	6	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	113085110	113085110	G	A	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	nonsense	c.2491	p.R831*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	171	0	0	105	15	12.5	-	-	-	A	113085110	G	A	113085110	4	1	275	1	0	0	0	0	0	1	0	0	17401	1066	37	1	3156	1	WDR52	3	113085110	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71576	113085110	84937320	1173	26860										
KIAA2018	0	genome.wustl.edu	37	chr3	113377887	113377887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctgctgacttagatttcGatacagactcaggtattaat	7	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	113377887	113377887	G	A	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.2642	p.S881L	0.692	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	217	0	0	158	50	23.92	-	-	-	A	113377887	G	A	113377887	3	1	275	1	0	0	0	0	1	0	0	0	8320	1059	37	1	4099	1	KIAA2018	3	113377887	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	292777	113377887	84644543	1174	26861										
KIAA2018	0	genome.wustl.edu	37	chr3	113379494	113379494	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcagttctgggaggctgCgagcagactgtggtggtaac	16	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	113379494	113379494	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	silent	c.1035	p.S345	0.980	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	223	1	0.45	189	32	14.48	-	-	-	T	113379494	C	T	113379494	2	4	275	1	0	0	0	0	0	0	0	1	8320	755	27	1		1	KIAA2018	3	113379494	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1607	113379494	84642936	1175	26862										
GRAMD1C	0	genome.wustl.edu	37	chr3	113664393	113664393	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctggaagaaaaccagacGaatgaaggattttggcatag	11	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	113664393	113664393	G	A	SNP	GRAMD1C	ENST00000479212	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	GRAMD1C	HGNC	ENSG00000178075	38	0	0	14	5	26.32	-	-	-	A	113664393	G	A	113664393	1	1	275	0	1	0	0	0	0	0	0	0	6800	1073	37	1		1	GRAMD1C	3	113664393	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	284899	113664393	84358037	1176	26863										
TIGIT	0	genome.wustl.edu	37	chr3	114026938	114026938	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcaatgtcctgagttacaGaagcctgggtaactgcagct	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	114026938	114026938	G	T	SNP	TIGIT	ENST00000383671	human	ensembl	69_37n	1	known	missense	c.695	p.R232I	1.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TIGIT	HGNC	ENSG00000181847	190	0	0	141	18	11.25	-	-	-	T	114026938	G	T	114026938	3	4	275	1	0	0	0	0	1	0	0	0	15997	942	33	2	709	2	TIGIT	3	114026938	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	362545	114026938	83995492	1177	26864										
GAP43	0	genome.wustl.edu	37	chr3	115395257	115395257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagctgagacagaaagtgCcactaaagcttccactgata	8	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	115395257	115395257	C	T	SNP	GAP43	ENST00000305124	human	ensembl	69_37n	1	known	missense	c.428	p.A143V	1.000	pfam_Neuromodulin_C	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	89	0	0	43	12	21.82	-	-	-	T	115395257	C	T	115395257	3	4	275	1	0	0	0	0	1	0	0	0	6285	739	26	4	576	4	GAP43	3	115395257	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1368319	115395257	82627173	1178	26865										
ARHGAP31	0	genome.wustl.edu	37	chr3	119087250	119087250	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcagatcaatgtccagatCtgacaagggaagtgtacctc	10	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	119087250	119087250	C	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.235	p.L79M	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	168	0	0	132	48	26.67	-	-	-	A	119087250	C	A	119087250	3	1	275	1	0	0	0	0	1	0	0	0	882	912	32	2	245	2	ARHGAP31	3	119087250	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3691993	119087250	78935180	1179	26866										
GPR156	0	genome.wustl.edu	37	chr3	119962496	119962496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctgcttacctgttcttcCtgcagtgaattgtaaaggca	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	119962496	119962496	C	A	SNP	GPR156	ENST00000315843	human	ensembl	69_37n	-1	known	missense	c.224	p.R75M	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	299	0	0	273	46	14.42	-	-	-	A	119962496	C	A	119962496	3	1	275	1	0	0	0	0	1	0	0	0	6711	681	24	4	2252	4	GPR156	3	119962496	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	875246	119962496	78059934	1180	26867										
FSTL1	0	genome.wustl.edu	37	chr3	120128476	120128476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccactggatgatgcgacgtCggagctcatcacggttggac	14	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	120128476	120128476	C	T	SNP	FSTL1	ENST00000295633	human	ensembl	69_37n	-1	known	missense	c.365	p.R122Q	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pfscan_EF_HAND_2	-	no_errors	FSTL1	HGNC	ENSG00000163430	159	0	0	72	48	40	-	-	-	T	120128476	C	T	120128476	3	4	275	1	0	0	0	0	1	0	0	0	6126	884	31	1	585	1	FSTL1	3	120128476	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165980	120128476	77893954	1181	26868										
GTF2E1	0	genome.wustl.edu	37	chr3	120495283	120495283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatatagcaaggaccatgcaGcaactactgctggagctgct	10	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	120495283	120495283	G	A	SNP	GTF2E1	ENST00000283875	human	ensembl	69_37n	1	known	missense	c.664	p.A222T	1.000	NULL	pfam_TFIIEa/SarR/Rpc3_HTH_dom,pfam_TFIIE_asu_C,pfam_Znf_TFIIB,smart_TFIIE_asu	-	no_errors	GTF2E1	HGNC	ENSG00000153767	219	0	0	99	42	29.58	-	-	-	A	120495283	G	A	120495283	3	1	275	1	0	0	0	0	1	0	0	0	6907	971	34	4	674	4	GTF2E1	3	120495283	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	366807	120495283	77527147	1182	26869										
STXBP5L	0	genome.wustl.edu	37	chr3	120952485	120952485	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcaagaaccctatgctgtCgtggtacttctggagaaaga	10	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	120952485	120952485	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	silent	c.1134	p.V378	0.972	pfam_LLGL2,superfamily_WD40_repeat_dom,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	515	0	0	331	96	22.48	-	-	-	T	120952485	C	T	120952485	2	4	275	1	0	0	0	0	0	0	0	1	15448	871	31	1		1	STXBP5L	3	120952485	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	457202	120952485	77069945	1183	26870										
STXBP5L	0	genome.wustl.edu	37	chr3	121097679	121097679	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctggaagaccaccatttCgaaaggcccagtcagcagcc	10	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121097679	121097679	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	nonsense	c.2365	p.R789*	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	117	0	0	70	12	14.63	-	-	-	T	121097679	C	T	121097679	4	4	275	1	0	0	0	0	0	1	0	0	15448	876	31	1	2447	1	STXBP5L	3	121097679	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	145194	121097679	76924751	1184	26871										
POLQ	0	genome.wustl.edu	37	chr3	121207340	121207340	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcatattcaaacttgtttCaggaactggaagacattctc	6	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121207340	121207340	C	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	nonsense	c.4438	p.E1480*	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	162	0	0	108	21	16.28	-	-	-	A	121207340	C	A	121207340	4	1	275	1	0	0	0	0	0	1	0	0	12282	835	29	2	3394	2	POLQ	3	121207340	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	109661	121207340	76815090	1185	26872										
GOLGB1	0	genome.wustl.edu	37	chr3	121410408	121410408	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttagataaatcttgtttCtcttcttgtagggcattaaa	6	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121410408	121410408	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.7788	p.E2596D	1.000	smart_Leu_zip_homeo	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	278	1	0.36	138	16	10.39	-	-	-	A	121410408	C	A	121410408	3	1	275	1	0	0	0	0	1	0	0	0	6614	912	32	2	2027	2	GOLGB1	3	121410408	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	203068	121410408	76612022	1186	26873										
GOLGB1	0	genome.wustl.edu	37	chr3	121413478	121413478	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacacactttttaaggttCttcatttcagattccaatag	4	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121413478	121413478	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.5877	p.K1959N	0.997	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	446	1	0.22	252	47	15.72	-	-	-	A	121413478	C	A	121413478	3	1	275	1	0	0	0	0	1	0	0	0	6614	912	32	2	3942	2	GOLGB1	3	121413478	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3070	121413478	76608952	1187	26874										
GOLGB1	0	genome.wustl.edu	37	chr3	121415022	121415022	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatgctctttggcttgcaTttctagctgtgtatgcagag	10	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121415022	121415022	T	G	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.4333	p.M1445L	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	262	0	0	123	41	25	-	-	-	G	121415022	T	G	121415022	3	3	275	1	0	0	0	0	1	0	0	0	6614	1493	52	5	5486	5	GOLGB1	3	121415022	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1544	121415022	76607408	1188	26875										
GOLGB1	0	genome.wustl.edu	37	chr3	121417377	121417377	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctttgttgatttcaattCtactccagcatcatttaaag	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121417377	121417377	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	nonsense	c.1978	p.E660*	0.766	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	100	0	0	87	19	17.92	-	-	-	A	121417377	C	A	121417377	4	1	275	1	0	0	0	0	0	1	0	0	6614	922	32	2	7841	2	GOLGB1	3	121417377	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2355	121417377	76605053	1189	26876										
IQCB1	0	genome.wustl.edu	37	chr3	121527848	121527848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgtagtaattcatctttTtcttcagccttaacataaaa	4	7	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	121527848	121527848	T	G	SNP	IQCB1	ENST00000310864	human	ensembl	69_37n	-1	known	missense	c.402	p.E134D	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	372	0	0	204	32	13.5	-	-	-	G	121527848	T	G	121527848	3	3	275	1	0	0	0	0	1	0	0	0	7857	1838	64	5	1434	5	IQCB1	3	121527848	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	110471	121527848	76494582	1190	26877										
FAM162A	0	genome.wustl.edu	37	chr3	122128605	122128605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgcccaaagacacgagaCtttaacaagcttgaacttag	9	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122128605	122128605	C	T	SNP	FAM162A	ENST00000477892	human	ensembl	69_37n	1	known	missense	c.392	p.T131I	0.999	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162A	HGNC	ENSG00000114023	147	0	0	138	37	21.14	-	-	-	T	122128605	C	T	122128605	3	4	275	1	0	0	0	0	1	0	0	0	5514	565	20	4	410	4	FAM162A	3	122128605	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	600757	122128605	75893825	1191	26878										
PARP9	0	genome.wustl.edu	37	chr3	122271467	122271467	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatatcatgtgggtttacaGaattaacaattacatctgcc	6	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122271467	122271467	G	T	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337Y	0.989	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	424	0	0	365	57	13.51	-	-	-	T	122271467	G	T	122271467	3	4	275	1	0	0	0	0	1	0	0	0	11539	942	33	2	1635	2	PARP9	3	122271467	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	142862	122271467	75750963	1192	26879										
DTX3L	0	genome.wustl.edu	37	chr3	122284753	122284753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaccaaatacttgttgacGaaaaacctgtgcccattttc	6	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122284753	122284753	G	A	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	192	0	0	101	21	17.21	-	-	-	A	122284753	G	A	122284753	3	1	275	1	0	0	0	0	1	0	0	0	4831	1059	37	1	241	1	DTX3L	3	122284753	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13286	122284753	75737677	1193	26880										
DTX3L	0	genome.wustl.edu	37	chr3	122284766	122284766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttgacgaaaaacctgtgcCcattttcctggtacccactg	8	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122284766	122284766	C	A	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	missense	c.248	p.P83H	0.007	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	193	0	0	106	17	13.82	-	-	-	A	122284766	C	A	122284766	3	1	275	1	0	0	0	0	1	0	0	0	4831	623	22	4	254	4	DTX3L	3	122284766	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13	122284766	75737664	1194	26881										
DTX3L	0	genome.wustl.edu	37	chr3	122287715	122287715	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcaactcaatagagaaaaGatttggtgtaaacattgaaa	7	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122287715	122287715	G	T	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	missense	c.779	p.R260I	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	83	0	0	42	25	37.31	-	-	-	T	122287715	G	T	122287715	3	4	275	1	0	0	0	0	1	0	0	0	4831	942	33	2	789	2	DTX3L	3	122287715	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2949	122287715	75734715	1195	26882										
DTX3L	0	genome.wustl.edu	37	chr3	122287953	122287953	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttataaaggagaaaggaggCgaattaactctccttgggac	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122287953	122287953	C	T	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	silent	c.1017	p.G339	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	111	0	0	57	14	19.72	-	-	-	T	122287953	C	T	122287953	2	4	275	1	0	0	0	0	0	0	0	1	4831	755	27	1		1	DTX3L	3	122287953	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	238	122287953	75734477	1196	26883										
PARP15	0	genome.wustl.edu	37	chr3	122329565	122329565	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactggaataatggagcagaGacttcttggcaggtagggaa	14	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122329565	122329565	G	T	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.531	p.E177D	0.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	132	1	0.75	113	18	13.74	-	-	-	T	122329565	G	T	122329565	3	4	275	1	0	0	0	0	1	0	0	0	11532	933	33	2	541	2	PARP15	3	122329565	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41612	122329565	75692865	1197	26884										
PARP15	0	genome.wustl.edu	37	chr3	122334567	122334567	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgatgatcaatgctccaaaGaattggattaatatttttac	6	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122334567	122334567	G	T	SNP	PARP15	ENST00000310366	human	ensembl	69_37n	1	known	missense	c.11	p.R4I	0.015	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	115	0	0	73	22	22.92	-	-	-	T	122334567	G	T	122334567	3	4	275	1	0	0	0	0	1	0	0	0	11532	942	33	2	800	2	PARP15	3	122334567	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5002	122334567	75687863	1198	26885										
PARP15	0	genome.wustl.edu	37	chr3	122351038	122351038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cataaaggacaagttcacccGaacttgttcttcctacgcaa	6	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122351038	122351038	G	A	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.1544	p.R515Q	0.060	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	251	0	0	163	30	15.38	-	-	-	A	122351038	G	A	122351038	3	1	275	1	0	0	0	0	1	0	0	0	11532	1058	37	1	1651	1	PARP15	3	122351038	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16471	122351038	75671392	1199	26886										
PARP14	0	genome.wustl.edu	37	chr3	122419358	122419358	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattacaggctgtgtaaaaGaagtaaatgaaacctataaa	7	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122419358	122419358	G	T	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	nonsense	c.1957	p.E653*	0.000	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	76	0	0	57	15	20.83	-	-	-	T	122419358	G	T	122419358	4	4	275	1	0	0	0	0	0	1	0	0	11531	943	33	2	1979	2	PARP14	3	122419358	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68320	122419358	75603072	1200	26887										
PARP14	0	genome.wustl.edu	37	chr3	122437651	122437651	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcattgttttaacaaaatGaccaatctgaaattagagga	6	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	122437651	122437651	G	T	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.4653	p.M1551I	0.070	pfam_WWE-dom,pfscan_WWE-dom	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	248	1	0.4	194	41	17.45	-	-	-	T	122437651	G	T	122437651	3	4	275	1	0	0	0	0	1	0	0	0	11531	1290	45	2	4707	2	PARP14	3	122437651	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18293	122437651	75584779	1201	26888										
ADCY5	0	genome.wustl.edu	37	chr3	123010055	123010055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagaactcggagaagttggCgatggaggcgaacatgaccg	16	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	123010055	123010055	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.3232	p.A1078T	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	49	0	0	31	4	11.43	-	-	-	T	123010055	C	T	123010055	3	4	275	1	0	0	0	0	1	0	0	0	297	768	27	1	569	1	ADCY5	3	123010055	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	572404	123010055	75012375	1202	26889										
MYLK	0	genome.wustl.edu	37	chr3	123385991	123385991	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtggccaattacctgccttCggaggtgtcttgggggcagg	16	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	123385991	123385991	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	silent	c.3696	p.P1232	0.814	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	459	1	0.22	340	135	28.36	-	-	-	T	123385991	C	T	123385991	2	4	275	1	0	0	0	0	0	0	0	1	10128	871	31	1		1	MYLK	3	123385991	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	375936	123385991	74636439	1203	26890										
MUC13	0	genome.wustl.edu	37	chr3	124632520	124632520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagccataataatcacaccGaagggtcactgagaagcaca	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	124632520	124632520	G	A	SNP	MUC13	ENST00000311075	human	ensembl	69_37n	-1	known	missense	c.970	p.R324W	0.000	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_SEA,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	MUC13	HGNC	ENSG00000173702	110	0	0	66	48	42.11	-	-	-	A	124632520	G	A	124632520	3	1	275	1	0	0	0	0	1	0	0	0	10043	1057	37	1	585	1	MUC13	3	124632520	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1246529	124632520	73389910	1204	26891										
HEG1	0	genome.wustl.edu	37	chr3	124738108	124738108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaatggaaaaactcactcGaacgttctccacgtggtgct	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	124738108	124738108	G	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1586	p.S529L	0.010	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	256	0	0	203	36	15.06	-	-	-	A	124738108	G	A	124738108	3	1	275	1	0	0	0	0	1	0	0	0	7095	1059	37	1	2611	1	HEG1	3	124738108	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	105588	124738108	73284322	1205	26892										
HEG1	0	genome.wustl.edu	37	chr3	124739797	124739797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggatgaagtcgtggcaattCtggagtccttggggaagcct	15	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	124739797	124739797	C	T	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1091	p.R364K	0.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	787	0	0	592	171	22.38	-	-	-	T	124739797	C	T	124739797	3	4	275	1	0	0	0	0	1	0	0	0	7095	913	32	2	3110	2	HEG1	3	124739797	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1689	124739797	73282633	1206	26893										
SLC12A8	0	genome.wustl.edu	37	chr3	124906179	124906179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accgctgccgatgctgctgcGctccccgacgccaatgccag	11	18	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	124906179	124906179	G	A	SNP	SLC12A8	ENST00000423114	human	ensembl	69_37n	-1	known	missense	c.379	p.R127C	0.993	pfam_AA-permease_dom	pfam_AA-permease_dom,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SLC12A8	HGNC	ENSG00000221955	149	0	0	82	34	28.81	-	-	-	A	124906179	G	A	124906179	3	1	275	1	0	0	0	0	1	0	0	0	14478	1087	38	1	1896	1	SLC12A8	3	124906179	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166382	124906179	73116251	1207	26894										
ROPN1B	0	genome.wustl.edu	37	chr3	125701224	125701224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctctacacgtatattgccGaagtggatggggagatctgt	12	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	125701224	125701224	G	A	SNP	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	missense	c.508	p.E170K	0.956	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	179	0	0	196	34	14.78	-	-	-	A	125701224	G	A	125701224	3	1	275	1	0	0	0	0	1	0	0	0	13610	1059	37	1	522	1	ROPN1B	3	125701224	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	795045	125701224	72321206	1208	26895										
ZXDC	0	genome.wustl.edu	37	chr3	126180577	126180577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattttctcggggggtgctcGaagaggtcggtgtggtgata	17	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	126180577	126180577	G	A	SNP	ZXDC	ENST00000389709	human	ensembl	69_37n	-1	known	missense	c.1928	p.S643L	0.724	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476	133	0	0	81	27	25	-	-	-	A	126180577	G	A	126180577	3	1	275	1	0	0	0	0	1	0	0	0	18343	1059	37	1	674	1	ZXDC	3	126180577	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	479353	126180577	71841853	1209	26896										
SEC61A1	0	genome.wustl.edu	37	chr3	127786643	127786643	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagatcagctgtgggtatgaGaatctgaatccacactgtaa	10	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	127786643	127786643	G	T	SNP	SEC61A1	ENST00000498837	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SEC61A1	HGNC	ENSG00000058262	12	0	0	4	4	50	-	-	-	T	127786643	G	T	127786643	1	4	275	0	1	0	0	0	0	0	0	0	14088	957	33	2		2	SEC61A1	3	127786643	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1606066	127786643	70235787	1210	26897										
RUVBL1	0	genome.wustl.edu	37	chr3	127816333	127816333	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccttattaatctcccctcGaagtttgtctaggagatgca	7	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	127816333	127816333	G	A	SNP	RUVBL1	ENST00000322623	human	ensembl	69_37n	-1	known	nonsense	c.826	p.R276*	0.998	pfam_TIP49_C,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792	271	0	0	238	39	14.03	-	-	-	A	127816333	G	A	127816333	4	1	275	1	0	0	0	0	0	1	0	0	13838	1066	37	1	560	1	RUVBL1	3	127816333	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	29690	127816333	70206097	1211	26898										
RUVBL1	0	genome.wustl.edu	37	chr3	127819557	127819557	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagcttcaaggtcgaattCtgtggcataggtatcacacc	9	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	127819557	127819557	C	A	SNP	RUVBL1	ENST00000322623	human	ensembl	69_37n	-1	known	nonsense	c.634	p.E212*	1.000	pfam_TIP49_C,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792	183	0	0	108	44	28.95	-	-	-	A	127819557	C	A	127819557	4	1	275	1	0	0	0	0	0	1	0	0	13838	922	32	2	760	2	RUVBL1	3	127819557	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3224	127819557	70202873	1212	26899										
EEFSEC	0	genome.wustl.edu	37	chr3	127981029	127981029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggggggaccagaggcccccGaaactgaagctccacagggc	15	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	127981029	127981029	G	A	SNP	EEFSEC	ENST00000254730	human	ensembl	69_37n	1	known	missense	c.583	p.E195K	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EEFSEC	HGNC	ENSG00000132394	133	0	0	103	28	21.37	-	-	-	A	127981029	G	A	127981029	3	1	275	1	0	0	0	0	1	0	0	0	4966	1059	37	1	593	1	EEFSEC	3	127981029	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161472	127981029	70041401	1213	26900										
KIAA1257	0	genome.wustl.edu	37	chr3	128695857	128695857	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtccattttgagggacttCtcatattcctcactgttctt	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	128695857	128695857	C	A	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.861	p.E287D	0.004	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	519	0	0	490	178	26.65	-	-	-	A	128695857	C	A	128695857	3	1	275	1	0	0	0	0	1	0	0	0	8270	912	32	2	380	2	KIAA1257	3	128695857	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	714828	128695857	69326573	1214	26901										
KIAA1257	0	genome.wustl.edu	37	chr3	128697001	128697001	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccctgttcagataattttCtctgatttaaaaccaaatgt	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	128697001	128697001	C	A	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.695	p.R232I	0.034	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	434	0	0	484	59	10.87	-	-	-	A	128697001	C	A	128697001	3	1	275	1	0	0	0	0	1	0	0	0	8270	913	32	2	550	2	KIAA1257	3	128697001	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1144	128697001	69325429	1215	26902										
ISY1	0	genome.wustl.edu	37	chr3	128852976	128852976	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttcctcctcctcttcctTttctcctcttgccagccgag	4	19	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	128852976	128852976	T	G	SNP	ISY1	ENST00000273541	human	ensembl	69_37n	-1	known	missense	c.670	p.K224Q	1.000	pfam_Isy1	pfam_Isy1	-	no_errors	ISY1	HGNC	ENSG00000240682	200	0	0	231	32	12.17	-	-	-	G	128852976	T	G	128852976	3	3	275	1	0	0	0	0	1	0	0	0	7920	1850	64	5	265	5	ISY1	3	128852976	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	155975	128852976	69169454	1216	26903										
IFT122	0	genome.wustl.edu	37	chr3	129237961	129237961	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccctccaggctcccagattCtgcggctagtggagaccaag	11	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	129237961	129237961	C	A	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	missense	c.3556	p.L1186M	0.305	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	48	0	0	20	12	37.5	-	-	-	A	129237961	C	A	129237961	3	1	275	1	0	0	0	0	1	0	0	0	7609	912	32	2	3673	2	IFT122	3	129237961	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	384985	129237961	68784469	1217	26904										
COL6A5	0	genome.wustl.edu	37	chr3	130113988	130113988	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagagcggtggatttccaaGaattgactttgcccttaaaa	9	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130113988	130113988	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3248	p.R1083I	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	227	0	0	168	32	15.92	-	-	-	T	130113988	G	T	130113988	3	4	275	1	0	0	0	0	1	0	0	0	3732	942	33	2	3274	2	COL6A5	3	130113988	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	876027	130113988	67908442	1218	26905										
COL6A5	0	genome.wustl.edu	37	chr3	130116534	130116534	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctacctcccaggcatcttaGaagacatcagctctatcaag	6	14	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130116534	130116534	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3676	p.E1226K	0.808	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	288	0	0	205	31	13.14	-	-	-	A	130116534	G	A	130116534	3	1	275	1	0	0	0	0	1	0	0	0	3732	943	33	2	3706	2	COL6A5	3	130116534	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2546	130116534	67905896	1219	26906										
COL6A5	0	genome.wustl.edu	37	chr3	130174354	130174354	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaatggcttcattggccaaGaattaaattctgggagagaa	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130174354	130174354	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	nonsense	c.6634	p.E2212*	0.167	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	121	0	0	69	24	25.26	-	-	-	T	130174354	G	T	130174354	4	4	275	1	0	0	0	0	0	1	0	0	3732	943	33	2	6776	2	COL6A5	3	130174354	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57820	130174354	67848076	1220	26907										
COL6A5	0	genome.wustl.edu	37	chr3	130188205	130188205	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccctaaacacaatgacaaaGaattagaagaattagccagc	7	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130188205	130188205	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	nonsense	c.7357	p.E2453*	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	691	0	0	350	57	14	-	-	-	T	130188205	G	T	130188205	4	4	275	1	0	0	0	0	0	1	0	0	3732	943	33	2	7503	2	COL6A5	3	130188205	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13851	130188205	67834225	1221	26908										
PIK3R4	0	genome.wustl.edu	37	chr3	130403144	130403144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcattgagaggcgtctgattCgagccctggaaggatgacag	15	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130403144	130403144	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.3557	p.R1186Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	740	1	0.13	448	58	11.39	-	-	-	T	130403144	C	T	130403144	3	4	275	1	0	0	0	0	1	0	0	0	11995	884	31	1	539	1	PIK3R4	3	130403144	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	214939	130403144	67619286	1222	26909										
PIK3R4	0	genome.wustl.edu	37	chr3	130424576	130424576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtactacttaaaaccggtaTtactggttttttattttgga	7	5	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130424576	130424576	T	G	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.2761	p.I921L	0.022	NULL	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	405	0	0	345	48	12.21	-	-	-	G	130424576	T	G	130424576	3	3	275	1	0	0	0	0	1	0	0	0	11995	1493	52	5	1351	5	PIK3R4	3	130424576	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	21432	130424576	67597854	1223	26910										
PIK3R4	0	genome.wustl.edu	37	chr3	130435316	130435316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcgggaagagaaccatttCgtttcttctgacgcatgtga	11	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130435316	130435316	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.2255	p.R752Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	184	0	0	135	15	10	-	-	-	T	130435316	C	T	130435316	3	4	275	1	0	0	0	0	1	0	0	0	11995	884	31	1	1869	1	PIK3R4	3	130435316	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10740	130435316	67587114	1224	26911										
ATP2C1	0	genome.wustl.edu	37	chr3	130714897	130714897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaatttcaggtctgcaatcGaagagggtaaagggatttat	11	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130714897	130714897	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	69_37n	1	known	missense	c.2170	p.E724K	1.000	prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C1	HGNC	ENSG00000017260	95	0	0	57	16	21.92	-	-	-	A	130714897	G	A	130714897	3	1	275	1	0	0	0	0	1	0	0	0	1147	1059	37	1	2154	1	ATP2C1	3	130714897	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	279581	130714897	67307533	1225	26912										
NEK11	0	genome.wustl.edu	37	chr3	130962291	130962291	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgacaggacagtgatatCgaagcgttggccaggtgttt	13	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	130962291	130962291	C	T	SNP	NEK11	ENST00000383366	human	ensembl	69_37n	1	known	silent	c.1572	p.I524	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670	1066	0	0	594	248	29.35	-	-	-	T	130962291	C	T	130962291	2	4	275	1	0	0	0	0	0	0	0	1	10395	874	31	1		1	NEK11	3	130962291	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	247394	130962291	67060139	1226	26913										
ACPP	0	genome.wustl.edu	37	chr3	132068830	132068830	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataccaagctacaaaaaacTcatcatgtattctgcggtaa	6	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	132068830	132068830	T	G	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.848	p.L283R	0.011	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	412	0	0	300	37	10.98	-	-	-	G	132068830	T	G	132068830	3	3	275	1	0	0	0	0	1	0	0	0	167	1551	54	5	878	5	ACPP	3	132068830	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1106539	132068830	65953600	1227	26914										
DNAJC13	0	genome.wustl.edu	37	chr3	132193831	132193831	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatttcaaaacacgagaaGaactgaaagatactcttgaa	8	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	132193831	132193831	G	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	nonsense	c.2347	p.E783*	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	131	0	0	92	14	13.21	-	-	-	T	132193831	G	T	132193831	4	4	275	1	0	0	0	0	0	1	0	0	4667	943	33	2	2429	2	DNAJC13	3	132193831	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	125001	132193831	65828599	1228	26915										
DNAJC13	0	genome.wustl.edu	37	chr3	132247154	132247154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctctcaaggcaatgactcGaagtttgcagtatggagaac	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	132247154	132247154	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.6503	p.R2168Q	1.000	NULL	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	261	0	0	131	53	28.8	-	-	-	A	132247154	G	A	132247154	3	1	275	1	0	0	0	0	1	0	0	0	4667	1058	37	1	6713	1	DNAJC13	3	132247154	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	53323	132247154	65775276	1229	26916										
ACAD11	0	genome.wustl.edu	37	chr3	132358390	132358390	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatctccatgaatcaaattCtcttcattgtcattatcggg	5	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	132358390	132358390	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	silent	c.648	p.E216	0.026	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	180	0	0	129	22	14.29	-	-	-	T	132358390	C	T	132358390	2	4	275	1	0	0	0	0	0	0	0	1	109	912	32	2		2	ACAD11	3	132358390	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	111236	132358390	65664040	1230	26917										
NPHP3	0	genome.wustl.edu	37	chr3	132427046	132427046	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaacgatgaaagattaatcGaggttttccttcagggtttt	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	132427046	132427046	G	A	SNP	NPHP3	ENST00000337331	human	ensembl	69_37n	-1	known	nonsense	c.1174	p.R392*	0.989	NULL	pfam_TPR-1,pfam_TPR-3,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971	145	0	0	114	38	25	-	-	-	A	132427046	G	A	132427046	4	1	275	1	0	0	0	0	0	1	0	0	10652	1066	37	1	2902	1	NPHP3	3	132427046	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68656	132427046	65595384	1231	26918										
BFSP2	0	genome.wustl.edu	37	chr3	133193873	133193873	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctcaacagctgacccaaGaagttgcttgaggagctttc	9	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	133193873	133193873	G	A	SNP	BFSP2	ENST00000510039	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BFSP2	HGNC	ENSG00000170819	255	0	0	123	42	25.45	-	-	-	A	133193873	G	A	133193873	1	1	275	0	1	0	0	0	0	0	0	0	1421	957	33	2		2	BFSP2	3	133193873	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	766827	133193873	64828557	1232	26919										
SLCO2A1	0	genome.wustl.edu	37	chr3	133673841	133673841	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcgagttgctgggctctgaGaagtcatccacataggagat	14	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	133673841	133673841	G	T	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.594	p.F198L	0.761	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	70	0	0	53	13	19.7	-	-	-	T	133673841	G	T	133673841	3	4	275	1	0	0	0	0	1	0	0	0	14815	933	33	2	1381	2	SLCO2A1	3	133673841	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	479968	133673841	64348589	1233	26920										
CEP63	0	genome.wustl.edu	37	chr3	134280304	134280304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctcatcacattctagagcGcttggatgcccatattgaag	9	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	134280304	134280304	G	A	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	missense	c.2039	p.R680H	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	852	0	0	616	255	29.11	-	-	-	A	134280304	G	A	134280304	3	1	275	1	0	0	0	0	1	0	0	0	3286	1087	38	1	2093	1	CEP63	3	134280304	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	606463	134280304	63742126	1234	26921										
EPHB1	0	genome.wustl.edu	37	chr3	134825414	134825414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggaccggttattaccgagcGgactttgaccctccagaagt	11	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	134825414	134825414	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.930	p.A310	0.003	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	184	0	0	117	44	27.33	-	-	-	A	134825414	G	A	134825414	2	1	275	1	0	0	0	0	0	0	0	1	5211	1103	39	1		1	EPHB1	3	134825414	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	545110	134825414	63197016	1235	26922										
PPP2R3A	0	genome.wustl.edu	37	chr3	135720848	135720848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccattataacaacgatgggAacgccccatcctttggttta	8	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	135720848	135720848	A	G	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	missense	c.508	p.N170D	0.929	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	273	0	0	179	29	13.88	-	-	-	G	135720848	A	G	135720848	3	3	275	1	0	0	0	0	1	0	0	0	12465	246	9	5	510	5	PPP2R3A	3	135720848	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	895434	135720848	62301582	1236	26923										
STAG1	0	genome.wustl.edu	37	chr3	136141358	136141358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatggtatattcttcactgCataagatactataggtttta	8	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	136141358	136141358	C	T	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.1931	p.C644Y	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	227	0	0	161	30	15.71	-	-	-	T	136141358	C	T	136141358	3	4	275	1	0	0	0	0	1	0	0	0	15333	710	25	4	1909	4	STAG1	3	136141358	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	420510	136141358	61881072	1237	26924										
STAG1	0	genome.wustl.edu	37	chr3	136141826	136141826	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cataggaagtgtaataataaAatgttcagtcaatttgtttc	7	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	136141826	136141826	A	C	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.1711	p.F571V	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	418	0	0	315	45	12.5	-	-	-	C	136141826	A	C	136141826	3	2	275	1	0	0	0	0	1	0	0	0	15333	14	1	5	2137	5	STAG1	3	136141826	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	468	136141826	61880604	1238	26925										
STAG1	0	genome.wustl.edu	37	chr3	136196196	136196196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggaaggcatcactatacaTtttcatccatactccaattt	4	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	136196196	136196196	T	C	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.961	p.M321V	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	301	0	0	194	26	11.82	-	-	-	C	136196196	T	C	136196196	3	2	275	1	0	0	0	0	1	0	0	0	15333	1493	52	5	2915	5	STAG1	3	136196196	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	54370	136196196	61826234	1239	26926										
MRAS	0	genome.wustl.edu	37	chr3	138119420	138119420	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggacccacctctcaatgtCgacaaagccttccatgacct	6	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	138119420	138119420	C	A	SNP	MRAS	ENST00000289104	human	ensembl	69_37n	1	known	silent	c.492	p.V164	0.032	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	MRAS	HGNC	ENSG00000158186	315	0	0	207	24	10.34	-	-	-	A	138119420	C	A	138119420	2	1	275	1	0	0	0	0	0	0	0	1	9827	871	31	3		3	MRAS	3	138119420	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1923224	138119420	59903010	1240	26927										
ESYT3	0	genome.wustl.edu	37	chr3	138183346	138183346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgaaccccacctggaacGaagtgtttgaggtaagggtc	12	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	138183346	138183346	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	missense	c.1075	p.E359K	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	177	0	0	126	49	28	-	-	-	A	138183346	G	A	138183346	3	1	275	1	0	0	0	0	1	0	0	0	5303	1059	37	1	1109	1	ESYT3	3	138183346	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	63926	138183346	59839084	1241	26928										
CEP70	0	genome.wustl.edu	37	chr3	138224288	138224288	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttggattgtggataattGaattgatgctacacagcacc	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	138224288	138224288	G	T	SNP	CEP70	ENST00000264982	human	ensembl	69_37n	-1	known	nonsense	c.1070	p.S357*	0.962	NULL	pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CEP70	HGNC	ENSG00000114107	79	0	0	40	17	29.82	-	-	-	T	138224288	G	T	138224288	4	4	275	1	0	0	0	0	0	1	0	0	3288	1294	45	2	747	2	CEP70	3	138224288	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40942	138224288	59798142	1242	26929										
CEP70	0	genome.wustl.edu	37	chr3	138256090	138256090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgttttgagtgacaatgcGatcttcttcctcctttttta	6	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	138256090	138256090	G	A	SNP	CEP70	ENST00000264982	human	ensembl	69_37n	-1	known	missense	c.565	p.R189C	0.478	NULL	pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CEP70	HGNC	ENSG00000114107	292	0	0	245	95	27.86	-	-	-	A	138256090	G	A	138256090	3	1	275	1	0	0	0	0	1	0	0	0	3288	1058	37	1	1276	1	CEP70	3	138256090	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31802	138256090	59766340	1243	26930										
PRR23B	0	genome.wustl.edu	37	chr3	138739247	138739247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagagacactcgcaggatcGacgttggtgcgggctccagc	15	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	138739247	138739247	G	A	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	missense	c.257	p.S86L	0.001	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	67	0	0	19	8	29.63	-	-	-	A	138739247	G	A	138739247	3	1	275	1	0	0	0	0	1	0	0	0	12676	1059	37	1	544	1	PRR23B	3	138739247	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	483157	138739247	59283183	1244	26931										
RBP1	0	genome.wustl.edu	37	chr3	139257746	139257746	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatggtcaccgtcctgcacGatctctttgtctggcttcag	9	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	139257746	139257746	G	A	SNP	RBP1	ENST00000232219	human	ensembl	69_37n	-1	known	silent	c.315	p.I105	0.997	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115	206	0	0	99	12	10.71	-	-	-	A	139257746	G	A	139257746	2	1	275	1	0	0	0	0	0	0	0	1	13238	1048	37	1		1	RBP1	3	139257746	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	518499	139257746	58764684	1245	26932										
CLSTN2	0	genome.wustl.edu	37	chr3	140122610	140122610	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggagtacacattcatcatCcaggcctatgactgtggtgc	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	140122610	140122610	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	silent	c.372	p.I124	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	184	0	0	96	19	16.52	-	-	-	T	140122610	C	T	140122610	2	4	275	1	0	0	0	0	0	0	0	1	3592	845	30	2		2	CLSTN2	3	140122610	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	864864	140122610	57899820	1246	26933										
TRIM42	0	genome.wustl.edu	37	chr3	140401334	140401334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccctgcgcactgggagcagCgatacccaggtggatgaagt	15	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	140401334	140401334	C	T	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	silent	c.372	p.S124	0.977	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	154	0	0	89	15	14.29	-	-	-	T	140401334	C	T	140401334	2	4	275	1	0	0	0	0	0	0	0	1	16613	767	27	1		1	TRIM42	3	140401334	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	278724	140401334	57621096	1247	26934										
RASA2	0	genome.wustl.edu	37	chr3	141292901	141292901	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcagatggctactcagaGatttcctagtaagtgccttg	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	141292901	141292901	G	T	SNP	RASA2	ENST00000452898	human	ensembl	69_37n	1	known	missense	c.1475	p.R492I	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903	182	0	0	102	56	35.44	-	-	-	T	141292901	G	T	141292901	3	4	275	1	0	0	0	0	1	0	0	0	13144	942	33	2	1529	2	RASA2	3	141292901	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	891567	141292901	56729529	1248	26935										
RASA2	0	genome.wustl.edu	37	chr3	141328315	141328315	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagacagagaaacagaaaGaatttattccctttttaccc	6	8	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	141328315	141328315	G	T	SNP	RASA2	ENST00000452898	human	ensembl	69_37n	1	known	missense	c.2282	p.R761I	1.000	NULL	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903	284	0	0	219	35	13.78	-	-	-	T	141328315	G	T	141328315	3	4	275	1	0	0	0	0	1	0	0	0	13144	942	33	2	2365	2	RASA2	3	141328315	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35414	141328315	56694115	1249	26936										
GK5	0	genome.wustl.edu	37	chr3	141905075	141905075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaggagagaaagtggtatcGaaattagagaggtaatcatc	13	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	141905075	141905075	G	A	SNP	GK5	ENST00000392993	human	ensembl	69_37n	-1	known	missense	c.716	p.S239L	0.998	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C	-	no_errors	GK5	HGNC	ENSG00000175066	189	0	0	145	39	21.2	-	-	-	A	141905075	G	A	141905075	3	1	275	1	0	0	0	0	1	0	0	0	6474	1059	37	1	909	1	GK5	3	141905075	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	576760	141905075	56117355	1250	26937										
XRN1	0	genome.wustl.edu	37	chr3	142103457	142103457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatttatttgatatttacGacctgtgagtaactgagcat	8	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142103457	142103457	G	A	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.2410	p.R804C	0.999	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	362	1	0.27	254	29	10.21	-	-	-	A	142103457	G	A	142103457	3	1	275	1	0	0	0	0	1	0	0	0	17556	1058	37	1	2798	1	XRN1	3	142103457	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	198382	142103457	55918973	1251	26938										
XRN1	0	genome.wustl.edu	37	chr3	142142427	142142427	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttttttgccaccaaatcGaacttcttctcttaagagag	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142142427	142142427	G	A	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	nonsense	c.685	p.R229*	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	259	0	0	212	56	20.9	-	-	-	A	142142427	G	A	142142427	4	1	275	1	0	0	0	0	0	1	0	0	17556	1066	37	1	4583	1	XRN1	3	142142427	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38970	142142427	55880003	1252	26939										
ATR	0	genome.wustl.edu	37	chr3	142178199	142178199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttggtagcatacactggcGaagttcttttcctgtcatat	8	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142178199	142178199	G	A	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.7219	p.R2407C	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	99	0	0	61	25	28.74	-	-	-	A	142178199	G	A	142178199	3	1	275	1	0	0	0	0	1	0	0	0	1208	1058	37	1	735	1	ATR	3	142178199	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35772	142178199	55844231	1253	26940										
ATR	0	genome.wustl.edu	37	chr3	142242885	142242885	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgttgagaaatctaatcGacctggatctatcgccccca	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142242885	142242885	G	A	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	nonsense	c.4102	p.R1368*	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	300	0	0	241	39	13.93	-	-	-	A	142242885	G	A	142242885	4	1	275	1	0	0	0	0	0	1	0	0	1208	1066	37	1	3936	1	ATR	3	142242885	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	64686	142242885	55779545	1254	26941										
ATR	0	genome.wustl.edu	37	chr3	142259779	142259779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggaaaatcatccttgaatCgaaggccagttctcagtgtg	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142259779	142259779	C	T	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.3548	p.R1183Q	1.000	pfam_UME,superfamily_ARM-type_fold,smart_UME	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	364	0	0	262	95	26.61	-	-	-	T	142259779	C	T	142259779	3	4	275	1	0	0	0	0	1	0	0	0	1208	884	31	1	4506	1	ATR	3	142259779	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16894	142259779	55762651	1255	26942										
TRPC1	0	genome.wustl.edu	37	chr3	142521154	142521154	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggactgtgtaggcatcttCtgtgaacagcaaagcaatga	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142521154	142521154	C	T	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	silent	c.1725	p.F575	1.000	pfam_Ion_trans_dom,prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	722	0	0	455	81	15.06	-	-	-	T	142521154	C	T	142521154	2	4	275	1	0	0	0	0	0	0	0	1	16674	912	32	2		2	TRPC1	3	142521154	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	261375	142521154	55501276	1256	26943										
TRPC1	0	genome.wustl.edu	37	chr3	142522858	142522858	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctttgttctggtatattttCtccttagcgcatgtggcaat	9	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142522858	142522858	C	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.1797	p.F599L	1.000	pfam_Ion_trans_dom,prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	512	0	0	318	107	25.18	-	-	-	A	142522858	C	A	142522858	3	1	275	1	0	0	0	0	1	0	0	0	16674	912	32	2	1733	2	TRPC1	3	142522858	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1704	142522858	55499572	1257	26944										
TRPC1	0	genome.wustl.edu	37	chr3	142522879	142522879	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttagcgcatgtggcaatCtttgtcacaagatttagcta	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	142522879	142522879	C	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	silent	c.1818	p.I606	1.000	pfam_Ion_trans_dom,prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	593	0	0	447	54	10.78	-	-	-	A	142522879	C	A	142522879	2	1	275	1	0	0	0	0	0	0	0	1	16674	903	32	2		2	TRPC1	3	142522879	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21	142522879	55499551	1258	26945										
SLC9A9	0	genome.wustl.edu	37	chr3	143293004	143293004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggccggtttccagcatcGggaactcacacagcttggta	11	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	143293004	143293004	G	A	SNP	SLC9A9	ENST00000316549	human	ensembl	69_37n	-1	known	missense	c.926	p.P309L	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804	245	0	0	172	78	31.2	-	-	-	A	143293004	G	A	143293004	3	1	275	1	0	0	0	0	1	0	0	0	14810	1116	39	1	1047	1	SLC9A9	3	143293004	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	770125	143293004	54729426	1259	26946										
AGTR1	0	genome.wustl.edu	37	chr3	148459199	148459199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacgtgtctcagcattgatcGatacctggctattgttcacc	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	148459199	148459199	G	A	SNP	AGTR1	ENST00000349243	human	ensembl	69_37n	1	known	missense	c.377	p.R126Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Frt_met_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor	-	no_errors	AGTR1	HGNC	ENSG00000144891	26	0	0	24	7	22.58	-	-	-	A	148459199	G	A	148459199	3	1	275	1	0	0	0	0	1	0	0	0	401	1058	37	1	379	1	AGTR1	3	148459199	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5166195	148459199	49563231	1260	26947										
CPB1	0	genome.wustl.edu	37	chr3	148577799	148577799	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgtactagttgagaaagCtgatggccttgtttcaaaat	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	148577799	148577799	C	A	SNP	CPB1	ENST00000476847	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CPB1	HGNC	ENSG00000153002	82	0	0	44	15	25.42	-	-	-	A	148577799	C	A	148577799	1	1	275	0	1	0	0	0	0	0	0	0	3826	812	28	4		4	CPB1	3	148577799	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	118600	148577799	49444631	1261	26948										
CPA3	0	genome.wustl.edu	37	chr3	148601559	148601559	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcccagatgctattgtttcCctatggatatacatcaaaac	5	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	148601559	148601559	C	A	SNP	CPA3	ENST00000296046	human	ensembl	69_37n	1	known	missense	c.938	p.P313H	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA3	HGNC	ENSG00000163751	131	0	0	87	11	11.22	-	-	-	A	148601559	C	A	148601559	3	1	275	1	0	0	0	0	1	0	0	0	3821	623	22	4	972	4	CPA3	3	148601559	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23760	148601559	49420871	1262	26949										
CP	0	genome.wustl.edu	37	chr3	148896220	148896220	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatgcattttattgctttCtatgaattcctcatcatctt	3	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	148896220	148896220	C	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	nonsense	c.2860	p.E954*	1.000	pfam_Cu-oxidase,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	687	0	0	416	173	29.37	-	-	-	A	148896220	C	A	148896220	4	1	275	1	0	0	0	0	0	1	0	0	3817	922	32	2	353	2	CP	3	148896220	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	294661	148896220	49126210	1263	26950										
CP	0	genome.wustl.edu	37	chr3	148928071	148928071	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttccccaggactttgttCttcagtggcaagcaacatgt	8	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	148928071	148928071	C	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	nonsense	c.490	p.E164*	0.005	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	544	0	0	367	59	13.85	-	-	-	A	148928071	C	A	148928071	4	1	275	1	0	0	0	0	0	1	0	0	3817	922	32	2	2775	2	CP	3	148928071	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31851	148928071	49094359	1264	26951										
COMMD2	0	genome.wustl.edu	37	chr3	149468587	149468587	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcaacaatttgtttaattCttcagagaatcccagaacaa	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	149468587	149468587	C	A	SNP	COMMD2	ENST00000473414	human	ensembl	69_37n	-1	known	nonsense	c.280	p.E94*	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD2	HGNC	ENSG00000114744	219	0	0	99	36	26.67	-	-	-	A	149468587	C	A	149468587	4	1	275	1	0	0	0	0	0	1	0	0	3746	922	32	2	327	2	COMMD2	3	149468587	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	540516	149468587	48553843	1265	26952										
TSC22D2	0	genome.wustl.edu	37	chr3	150176284	150176284	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaatgcactgttaaaatCtctttcaagcaatgatcaat	5	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	150176284	150176284	C	A	SNP	TSC22D2	ENST00000361875	human	ensembl	69_37n	1	known	missense	c.2204	p.S735Y	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428	210	0	0	139	20	12.58	-	-	-	A	150176284	C	A	150176284	3	1	275	1	0	0	0	0	1	0	0	0	16704	913	32	2	2218	2	TSC22D2	3	150176284	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	707697	150176284	47846146	1266	26953										
FAM194A	0	genome.wustl.edu	37	chr3	150384648	150384648	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagaaatcttgtcttgttCtaagatgcggactccaatat	7	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	150384648	150384648	C	A	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	nonsense	c.1654	p.E552*	0.997	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	554	0	0	403	88	17.92	-	-	-	A	150384648	C	A	150384648	4	1	275	1	0	0	0	0	0	1	0	0	5568	922	32	2	345	2	FAM194A	3	150384648	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	208364	150384648	47637782	1267	26954										
MED12L	0	genome.wustl.edu	37	chr3	150883693	150883693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcgtcactgttttgaccGaactgattccagcaattcca	8	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	150883693	150883693	G	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.1418	p.R473Q	1.000	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	433	2	0.46	291	92	24.02	-	-	-	A	150883693	G	A	150883693	3	1	275	1	0	0	0	0	1	0	0	0	9500	1058	37	1	1456	1	MED12L	3	150883693	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	499045	150883693	47138737	1268	26955										
IGSF10	0	genome.wustl.edu	37	chr3	151165197	151165197	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagtagacagtttgaaatCtgtgggttcttcaggtggta	13	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	151165197	151165197	C	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.2572	p.D858Y	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	175	0	0	134	27	16.56	-	-	-	A	151165197	C	A	151165197	3	1	275	1	0	0	0	0	1	0	0	0	7651	913	32	2	5359	2	IGSF10	3	151165197	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	281504	151165197	46857233	1269	26956										
AADAC	0	genome.wustl.edu	37	chr3	151545640	151545640	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccctgagaggtttataaaaGgacatgtttataacaatcca	7	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	151545640	151545640	G	T	SNP	AADAC	ENST00000232892	human	ensembl	69_37n	1	known	nonsense	c.880	p.G294*	0.612	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771	59	0	0	37	11	22.92	-	-	-	T	151545640	G	T	151545640	4	4	275	1	0	0	0	0	0	1	0	0	10	1001	35	4	898	4	AADAC	3	151545640	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	380443	151545640	46476790	1270	26957										
PLCH1	0	genome.wustl.edu	37	chr3	155203258	155203258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggcgtgcttgcaaactgCgtgtggtcctcctcagcacg	13	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	155203258	155203258	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.2885	p.R962H	0.987	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	173	0	0	99	13	11.5	-	-	-	T	155203258	C	T	155203258	3	4	275	1	0	0	0	0	1	0	0	0	12111	768	27	1	2219	1	PLCH1	3	155203258	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3657618	155203258	42819172	1271	26958										
GMPS	0	genome.wustl.edu	37	chr3	155611486	155611486	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctataaaggaacaaggattCcggtagacttttcactaatc	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	155611486	155611486	C	G	SNP	GMPS	ENST00000496455	human	ensembl	69_37n	1	known	missense	c.207	p.F69L	1.000	pfam_GATASE_1,tigrfam_GMP_synth_N	pfam_GATASE_1,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	201	0	0	137	31	18.45	-	-	-	G	155611486	C	G	155611486	3	3	275	1	0	0	0	0	1	0	0	0	6550	854	30	2	213	2	GMPS	3	155611486	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	408228	155611486	42410944	1272	26959										
GMPS	0	genome.wustl.edu	37	chr3	155652736	155652736	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttggcccaccagttaaaGaacctcctacagatgttact	6	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	155652736	155652736	G	T	SNP	GMPS	ENST00000496455	human	ensembl	69_37n	1	known	nonsense	c.1708	p.E570*	1.000	pfam_GMP_synth_C	pfam_GATASE_1,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	392	0	0	311	52	14.33	-	-	-	T	155652736	G	T	155652736	4	4	275	1	0	0	0	0	0	1	0	0	6550	943	33	2	1762	2	GMPS	3	155652736	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41250	155652736	42369694	1273	26960										
LEKR1	0	genome.wustl.edu	37	chr3	156710888	156710888	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatgctgcttaaggaaaaaGaagactctttaatgacttgt	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	156710888	156710888	G	T	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	nonsense	c.931	p.E311*	1.000	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	196	0	0	116	36	23.68	-	-	-	T	156710888	G	T	156710888	4	4	275	1	0	0	0	0	0	1	0	0	8771	943	33	2	961	2	LEKR1	3	156710888	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1058152	156710888	41311542	1274	26961										
VEPH1	0	genome.wustl.edu	37	chr3	157131780	157131780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaactgttcaaagccactgGctcatagactgctatctcta	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	157131780	157131780	G	A	SNP	VEPH1	ENST00000362010	human	ensembl	69_37n	-1	known	missense	c.796	p.P266S	0.902	superfamily_ARM-type_fold	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415	556	1	0.18	398	72	15.29	-	-	-	A	157131780	G	A	157131780	3	1	275	1	0	0	0	0	1	0	0	0	17251	1203	42	4	1741	4	VEPH1	3	157131780	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	420892	157131780	40890650	1275	26962										
SMC4	0	genome.wustl.edu	37	chr3	160138650	160138650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtaaacttccttaaaagAcaaaatattggagttgcaac	7	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	160138650	160138650	A	C	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.1980	p.R660S	0.989	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	252	0	0	220	37	14.4	-	-	-	C	160138650	A	C	160138650	3	2	275	1	0	0	0	0	1	0	0	0	14874	272	10	5	2026	5	SMC4	3	160138650	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3006870	160138650	37883780	1276	26963										
NMD3	0	genome.wustl.edu	37	chr3	160967284	160967284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accggaccaaacgtcagcgtCgtagaaactggaaattgaaa	10	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	160967284	160967284	C	T	SNP	NMD3	ENST00000351193	human	ensembl	69_37n	1	known	missense	c.1246	p.R416C	1.000	NULL	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251	450	0	0	212	44	17.19	-	-	-	T	160967284	C	T	160967284	3	4	275	1	0	0	0	0	1	0	0	0	10560	884	31	1	1296	1	NMD3	3	160967284	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	828634	160967284	37055146	1277	26964										
NMD3	0	genome.wustl.edu	37	chr3	160967297	160967297	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagcgtcgtagaaactggaAattgaaagagcttgcaagag	12	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	160967297	160967297	A	C	SNP	NMD3	ENST00000351193	human	ensembl	69_37n	1	known	missense	c.1259	p.K420T	1.000	NULL	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251	476	0	0	237	27	10.23	-	-	-	C	160967297	A	C	160967297	3	2	275	1	0	0	0	0	1	0	0	0	10560	14	1	5	1309	5	NMD3	3	160967297	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	13	160967297	37055133	1278	26965										
OTOL1	0	genome.wustl.edu	37	chr3	161221501	161221501	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgagggggcgacctgctcGaatcagtctggtggcccaga	17	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	161221501	161221501	G	A	SNP	OTOL1	ENST00000327928	human	ensembl	69_37n	1	known	missense	c.1205	p.R402Q	0.030	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	OTOL1	HGNC	ENSG00000182447	811	0	0	361	54	13.01	-	-	-	A	161221501	G	A	161221501	3	1	275	1	0	0	0	0	1	0	0	0	11377	1058	37	1	1219	1	OTOL1	3	161221501	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	254204	161221501	36800929	1279	26966										
SI	0	genome.wustl.edu	37	chr3	164739077	164739077	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggattttccttgatttccAcatcataaagtctgtcttca	5	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164739077	164739077	A	G	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.3194	p.V1065A	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	477	0	0	218	87	28.52	-	-	-	G	164739077	A	G	164739077	3	3	275	1	0	0	0	0	1	0	0	0	14386	159	6	5	2377	5	SI	3	164739077	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3517576	164739077	33283353	1280	26967										
SI	0	genome.wustl.edu	37	chr3	164741402	164741402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatatttcacctccacacGaagagttgagatggggtcag	12	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164741402	164741402	G	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.3055	p.R1019C	0.993	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	313	0	0	220	81	26.91	-	-	-	A	164741402	G	A	164741402	3	1	275	1	0	0	0	0	1	0	0	0	14386	1058	37	1	2520	1	SI	3	164741402	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2325	164741402	33281028	1281	26968										
SLITRK3	0	genome.wustl.edu	37	chr3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttgtcttctccaggacttCgaggtaatccggcttggttt	11	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164905717	164905717	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.2902	p.E968K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	217	0	0	199	66	24.91	-	-	-	T	164905717	C	T	164905717	3	4	275	1	0	0	0	0	1	0	0	0	14833	893	31	1	35	1	SLITRK3	3	164905717	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	164315	164905717	33116713	1282	26969										
SLITRK3	0	genome.wustl.edu	37	chr3	164906572	164906572	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgaagggcagcttctttcGacgccttcggagcacgtagg	13	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164906572	164906572	G	A	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	nonsense	c.2047	p.R683*	0.442	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	150	0	0	159	18	10.17	-	-	-	A	164906572	G	A	164906572	4	1	275	1	0	0	0	0	0	1	0	0	14833	1066	37	1	890	1	SLITRK3	3	164906572	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	855	164906572	33115858	1283	26970										
SLITRK3	0	genome.wustl.edu	37	chr3	164907988	164907988	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcattcctcggtaaaaaaGaacctttaacctatttccac	4	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164907988	164907988	G	T	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.631	p.L211I	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	213	0	0	204	72	26.09	-	-	-	T	164907988	G	T	164907988	3	4	275	1	0	0	0	0	1	0	0	0	14833	942	33	2	2306	2	SLITRK3	3	164907988	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1416	164907988	33114442	1284	26971										
SLITRK3	0	genome.wustl.edu	37	chr3	164908277	164908277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagctccagtctgaatgtcCtgcaatgcattgttcccaag	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	164908277	164908277	C	A	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.342	p.Q114H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	77	0	0	66	27	29.03	-	-	-	A	164908277	C	A	164908277	3	1	275	1	0	0	0	0	1	0	0	0	14833	680	24	4	2595	4	SLITRK3	3	164908277	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	289	164908277	33114153	1285	26972										
BCHE	0	genome.wustl.edu	37	chr3	165547490	165547490	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcaaaatagtagaaaaaGgcattatttccccattctga	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	165547490	165547490	G	T	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	silent	c.1332	p.A444	0.008	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	211	0	0	132	24	15.38	-	-	-	T	165547490	G	T	165547490	2	4	275	1	0	0	0	0	0	0	0	1	1362	987	35	4		4	BCHE	3	165547490	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	639213	165547490	32474940	1286	26973										
SERPINI2	0	genome.wustl.edu	37	chr3	167170822	167170822	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttttgttctactttaaatCtgttattaaaaaaaaaagaa	3	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	167170822	167170822	C	A	SNP	SERPINI2	ENST00000264677	human	ensembl	69_37n	-1	known	splice_site	c.867-1	e5-1	1.000	-	-	-	no_errors	SERPINI2	HGNC	ENSG00000114204	165	0	0	132	19	12.58	-	-	-	A	167170822	C	A	167170822	5	1	275	1	0	0	0	0	0	0	1	0	14207	927	32	2	367	2	SERPINI2	3	167170822	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1623332	167170822	30851608	1287	26974										
GOLIM4	0	genome.wustl.edu	37	chr3	167766125	167766125	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctttttgcaaggatttCtctaatcttgatctgtgttc	6	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	167766125	167766125	C	A	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.216	p.E72D	1.000	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	793	0	0	520	172	24.82	-	-	-	A	167766125	C	A	167766125	3	1	275	1	0	0	0	0	1	0	0	0	6615	912	32	2	1934	2	GOLIM4	3	167766125	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	595303	167766125	30256305	1288	26975										
MECOM	0	genome.wustl.edu	37	chr3	168833780	168833780	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttattgaagccagattcTgaagagggcttactttgtct	9	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	168833780	168833780	T	G	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.1880	p.Q627P	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	864	0	0	621	231	27.02	-	-	-	G	168833780	T	G	168833780	3	3	275	1	0	0	0	0	1	0	0	0	9493	1580	55	5	1879	5	MECOM	3	168833780	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1067655	168833780	29188650	1289	26976										
MECOM	0	genome.wustl.edu	37	chr3	168838897	168838897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgttgtttgaggcccgacGaagtggcaaacgttttgcca	13	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	168838897	168838897	G	A	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.1079	p.S360L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	271	0	0	183	30	14.02	-	-	-	A	168838897	G	A	168838897	3	1	275	1	0	0	0	0	1	0	0	0	9493	1059	37	1	2684	1	MECOM	3	168838897	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5117	168838897	29183533	1290	26977										
LRRC31	0	genome.wustl.edu	37	chr3	169557856	169557856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctcctgtgaagctgggaGaatccatcttttcattccta	7	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	169557856	169557856	G	A	SNP	LRRC31	ENST00000316428	human	ensembl	69_37n	-1	known	missense	c.1573	p.L525F	0.083	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248	353	0	0	311	97	23.77	-	-	-	A	169557856	G	A	169557856	3	1	275	1	0	0	0	0	1	0	0	0	9052	942	33	2	89	2	LRRC31	3	169557856	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	718959	169557856	28464574	1291	26978										
SAMD7	0	genome.wustl.edu	37	chr3	169646334	169646334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgtgcacagcttcattCgcagccttccaggttgttca	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	169646334	169646334	C	T	SNP	SAMD7	ENST00000335556	human	ensembl	69_37n	1	known	missense	c.1009	p.R337C	0.001	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD7	HGNC	ENSG00000187033	355	2	0.56	252	40	13.7	-	-	-	T	169646334	C	T	169646334	3	4	275	1	0	0	0	0	1	0	0	0	13910	884	31	1	1027	1	SAMD7	3	169646334	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	88478	169646334	28376096	1292	26979										
TNIK	0	genome.wustl.edu	37	chr3	170828506	170828506	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaagagaaagttttacctcGaactctggtgcgttcactgg	11	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	170828506	170828506	G	A	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	nonsense	c.2281	p.R761*	0.970	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	201	0	0	138	49	26.2	-	-	-	A	170828506	G	A	170828506	4	1	275	1	0	0	0	0	0	1	0	0	16408	1066	37	1	1861	1	TNIK	3	170828506	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1182172	170828506	27193924	1293	26980										
PLD1	0	genome.wustl.edu	37	chr3	171405331	171405331	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttttgaacaggctcatttTtatctttgagtcttaaggat	9	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	171405331	171405331	T	G	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.1583	p.K528T	0.983	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	236	0	0	154	57	27.01	-	-	-	G	171405331	T	G	171405331	3	3	275	1	0	0	0	0	1	0	0	0	12119	1841	64	5	1693	5	PLD1	3	171405331	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	576825	171405331	26617099	1294	26981										
GHSR	0	genome.wustl.edu	37	chr3	172165840	172165840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaggtgcagctctcactgaCgaattggaagagtttgcaga	13	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	172165840	172165840	C	T	SNP	GHSR	ENST00000241256	human	ensembl	69_37n	-1	known	missense	c.364	p.V122I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_GHS1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_GHS1_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853	154	0	0	71	34	32.38	-	-	-	T	172165840	C	T	172165840	3	4	275	1	0	0	0	0	1	0	0	0	6427	536	19	1	818	1	GHSR	3	172165840	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	760509	172165840	25856590	1295	26982										
ECT2	0	genome.wustl.edu	37	chr3	172537987	172537987	+	Missense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttccttctttgaaaggaGaagtcatacgttaagtagat							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	172537987	172537987	G	T	SNP	ECT2	ENST00000540509	human	ensembl	69_37n	1	known	missense	c.2705	p.R902I	1.000	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	259	0	0	183	23	11.17	-	-	-	T	172537987	G	T	172537987	3	4	275	1	0	0	0	0	1	0	0	0	4936	942	33	2	2702	2	ECT2	3	172537987	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	372147	172537987	25484443	1296	26983	237	2								
ECT2	0	genome.wustl.edu	37	chr3	172537997	172537997	+	Silent	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgaaaggagaagtcatacGttaagtagatctacaactca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	172537997	172537997	G	A	SNP	ECT2	ENST00000540509	human	ensembl	69_37n	1	known	silent	c.2715	p.T905	0.860	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	242	0	0	147	46	23.83	-	-	-	A	172537997	G	A	172537997	2	1	275	1	0	0	0	0	0	0	0	1	4936	1132	40	1		1	ECT2	3	172537997	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10	172537997	25484433	1297	26984	237	2								
NAALADL2	0	genome.wustl.edu	37	chr3	174814789	174814789	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactatagacctcaatcttGattccattcaaccagcaact	4	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	174814789	174814789	G	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.253	p.D85Y	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	115	0	0	77	27	25.96	-	-	-	T	174814789	G	T	174814789	3	4	275	1	0	0	0	0	1	0	0	0	10202	1290	45	2	259	2	NAALADL2	3	174814789	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2276792	174814789	23207641	1298	26985										
NAALADL2	0	genome.wustl.edu	37	chr3	175345142	175345142	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaaattgaagaaatggatCcctctttcaaccttcatgaa	5	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	175345142	175345142	C	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.1864	p.P622S	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	234	0	0	180	58	24.37	-	-	-	T	175345142	C	T	175345142	3	4	275	1	0	0	0	0	1	0	0	0	10202	855	30	2	1906	2	NAALADL2	3	175345142	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	530353	175345142	22677288	1299	26986										
KCNMB2	0	genome.wustl.edu	37	chr3	178543456	178543456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgaaggcaggagaggaccGagctattctcctgggactgg	15	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	178543456	178543456	G	A	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	1	known	missense	c.137	p.R46Q	1.000	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	266	1	0.37	189	60	24	-	-	-	A	178543456	G	A	178543456	3	1	275	1	0	0	0	0	1	0	0	0	8129	1058	37	1	143	1	KCNMB2	3	178543456	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3198314	178543456	19478974	1300	26987										
KCNMB2	0	genome.wustl.edu	37	chr3	178560465	178560465	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctatatacctaaatgtggaAaaaattttgaagaatccatg	6	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	178560465	178560465	A	C	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	1	known	missense	c.448	p.K150Q	1.000	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	105	0	0	80	32	28.57	-	-	-	C	178560465	A	C	178560465	3	2	275	1	0	0	0	0	1	0	0	0	8129	15	1	5	462	5	KCNMB2	3	178560465	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	17009	178560465	19461965	1301	26988										
PIK3CA	0	genome.wustl.edu	37	chr3	178917560	178917560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccgaagaaatattctgaaCgtttgtaaagaagctgtgga	10	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	178917560	178917560	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.435	p.N145	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	324	0	0	219	32	12.7	-	-	-	T	178917560	C	T	178917560	2	4	275	1	0	0	0	0	0	0	0	1	11987	535	19	1		1	PIK3CA	3	178917560	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	357095	178917560	19104870	1302	26989										
PIK3CA	0	genome.wustl.edu	37	chr3	178952007	178952007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttttgatgacattgcatAcattcgaaagaccctagcct	6	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	178952007	178952007	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3062	p.Y1021C	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	147	0	0	82	42	33.87	-	-	-	G	178952007	A	G	178952007	3	3	275	1	0	0	0	0	1	0	0	0	11987	391	14	5	3140	5	PIK3CA	3	178952007	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	34447	178952007	19070423	1303	26990										
MFN1	0	genome.wustl.edu	37	chr3	179069703	179069703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagcaacatataagaatcCggaacttgatcgaatagcca	8	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	179069703	179069703	C	T	SNP	MFN1	ENST00000263969	human	ensembl	69_37n	1	known	missense	c.128	p.P43L	1.000	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	143	0	0	104	35	25	-	-	-	T	179069703	C	T	179069703	3	4	275	1	0	0	0	0	1	0	0	0	9594	652	23	1	134	1	MFN1	3	179069703	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117696	179069703	18952727	1304	26991										
MRPL47	0	genome.wustl.edu	37	chr3	179306713	179306713	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtggaaacttttttaaaaGaatttttgctttctttctct	5	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	179306713	179306713	G	T	SNP	MRPL47	ENST00000476781	human	ensembl	69_37n	-1	known	missense	c.700	p.L234I	0.162	NULL	pfam_Ribosomal_L47_mit	-	no_errors	MRPL47	HGNC	ENSG00000136522	99	0	0	66	11	14.29	-	-	-	T	179306713	G	T	179306713	3	4	275	1	0	0	0	0	1	0	0	0	9883	942	33	2	56	2	MRPL47	3	179306713	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	237010	179306713	18715717	1305	26992										
USP13	0	genome.wustl.edu	37	chr3	179399666	179399666	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttttctctttcttctagAattctgaaggtggactctat	6	8	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	179399666	179399666	A	C	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	missense	c.169	p.N57H	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	193	0	0	146	26	15.12	-	-	-	C	179399666	A	C	179399666	3	2	275	1	0	0	0	0	1	0	0	0	17141	260	9	5	175	5	USP13	3	179399666	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	92953	179399666	18622764	1306	26993										
USP13	0	genome.wustl.edu	37	chr3	179426667	179426667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgacagctctgggggcaacGggcatgcgctggagcattac	15	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	179426667	179426667	G	A	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	missense	c.727	p.G243R	1.000	pfam_Znf_UBP,smart_Znf_UBP,pirsf_Ubiquitinyl_hydrolase,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	142	0	0	67	38	36.19	-	-	-	A	179426667	G	A	179426667	3	1	275	1	0	0	0	0	1	0	0	0	17141	1116	39	1	749	1	USP13	3	179426667	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	27001	179426667	18595763	1307	26994										
PEX5L	0	genome.wustl.edu	37	chr3	179527357	179527357	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggattttgcttaatccaattCttcagagcgtcacaggcatc	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	179527357	179527357	C	A	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.1254	p.K418N	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	186	0	0	104	12	10.34	-	-	-	A	179527357	C	A	179527357	3	1	275	1	0	0	0	0	1	0	0	0	11823	912	32	2	642	2	PEX5L	3	179527357	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	100690	179527357	18495073	1308	26995										
DNAJC19	0	genome.wustl.edu	37	chr3	180703743	180703743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgatttaaaagcataattCgtcgatgagcatctcttatt	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	180703743	180703743	C	T	SNP	DNAJC19	ENST00000382564	human	ensembl	69_37n	-1	known	missense	c.251	p.R84Q	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC19	HGNC	ENSG00000205981	281	0	0	188	32	14.55	-	-	-	T	180703743	C	T	180703743	3	4	275	1	0	0	0	0	1	0	0	0	4673	884	31	1	107	1	DNAJC19	3	180703743	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1176386	180703743	17318687	1309	26996										
ATP11B	0	genome.wustl.edu	37	chr3	182559900	182559900	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcataacccaacaaatggaaGaaattgtaaggtaagaatta	7	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	182559900	182559900	G	T	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	nonsense	c.694	p.E232*	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	567	0	0	456	64	12.31	-	-	-	T	182559900	G	T	182559900	4	4	275	1	0	0	0	0	0	1	0	0	1124	943	33	2	724	2	ATP11B	3	182559900	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1856157	182559900	15462530	1310	26997										
ATP11B	0	genome.wustl.edu	37	chr3	182584203	182584203	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actatgcatcttcaccagatGaaaaggctctagtagaagct	8	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	182584203	182584203	G	T	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	nonsense	c.1591	p.E531*	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	146	0	0	100	13	11.5	-	-	-	T	182584203	G	T	182584203	4	4	275	1	0	0	0	0	0	1	0	0	1124	1291	45	2	1645	2	ATP11B	3	182584203	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24303	182584203	15438227	1311	26998										
ATP11B	0	genome.wustl.edu	37	chr3	182615190	182615190	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttgttttatggagggattCtctggtgagtgaatatattg	12	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	182615190	182615190	C	A	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	missense	c.3148	p.L1050I	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	136	0	0	73	24	24.74	-	-	-	A	182615190	C	A	182615190	3	1	275	1	0	0	0	0	1	0	0	0	1124	913	32	2	3254	2	ATP11B	3	182615190	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30987	182615190	15407240	1312	26999										
MCF2L2	0	genome.wustl.edu	37	chr3	182923979	182923979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatggctcccccttccaagCtggcgaattgaaagtgtcat	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	182923979	182923979	C	G	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	missense	c.2736	p.Q912H	0.117	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	246	0	0	266	54	16.82	-	-	-	G	182923979	C	G	182923979	3	3	275	1	0	0	0	0	1	0	0	0	9451	796	28	4	636	4	MCF2L2	3	182923979	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	308789	182923979	15098451	1313	27000										
B3GNT5	0	genome.wustl.edu	37	chr3	182988607	182988607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaatgctacagatcctaaaGtaaaaaccatttccaaaggt	6	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	182988607	182988607	G	T	SNP	B3GNT5	ENST00000326505	human	ensembl	69_37n	1	known	missense	c.1021	p.V341L	0.999	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597	80	0	0	82	48	36.92	-	-	-	T	182988607	G	T	182988607	3	4	275	1	0	0	0	0	1	0	0	0	1264	1029	36	4	1023	4	B3GNT5	3	182988607	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	64628	182988607	15033823	1314	27001										
KLHL24	0	genome.wustl.edu	37	chr3	183368322	183368322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccagatatttaatgaatttCgtgatagccgcttattcaca	6	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	183368322	183368322	C	T	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.178	p.R60C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	222	2	0.89	157	78	33.05	-	-	-	T	183368322	C	T	183368322	3	4	275	1	0	0	0	0	1	0	0	0	8432	884	31	1	180	1	KLHL24	3	183368322	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	379715	183368322	14654108	1315	27002										
EIF2B5	0	genome.wustl.edu	37	chr3	183859757	183859757	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctacctgtggcagggtgttCgagtggcggctggagcacag	17	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	183859757	183859757	C	T	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	nonsense	c.1201	p.R401*	0.336	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	217	1	0.46	152	26	14.61	-	-	-	T	183859757	C	T	183859757	4	4	275	1	0	0	0	0	0	1	0	0	5039	876	31	1	1231	1	EIF2B5	3	183859757	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	491435	183859757	14162673	1316	27003										
EIF4G1	0	genome.wustl.edu	37	chr3	184041274	184041274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgccacagtgttaatgaccGaagatataaaactgaacaaa	7	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	184041274	184041274	G	A	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.2188	p.E730K	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	130	0	0	92	31	25.2	-	-	-	A	184041274	G	A	184041274	3	1	275	1	0	0	0	0	1	0	0	0	5073	1059	37	1	2217	1	EIF4G1	3	184041274	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181517	184041274	13981156	1317	27004										
FAM131A	0	genome.wustl.edu	37	chr3	184056252	184056252	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcctctttgggatctgctCgaaccctccgaggctggagc	11	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	184056252	184056252	C	T	SNP	FAM131A	ENST00000383847	human	ensembl	69_37n	1	known	nonsense	c.166	p.R56*	0.950	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182	260	0	0	122	18	12.86	-	-	-	T	184056252	C	T	184056252	4	4	275	1	0	0	0	0	0	1	0	0	5479	876	31	1	172	1	FAM131A	3	184056252	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14978	184056252	13966178	1318	27005										
FAM131A	0	genome.wustl.edu	37	chr3	184059681	184059681	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catccctttggaactgtttcCtgtgagtacatgctggggtc	11	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	184059681	184059681	C	T	SNP	FAM131A	ENST00000310585	human	ensembl	69_37n	1	known	silent	c.60	p.S20	0.077	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182	594	0	0	329	115	25.84	-	-	-	T	184059681	C	T	184059681	2	4	275	1	0	0	0	0	0	0	0	1	5479	696	24	4		4	FAM131A	3	184059681	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3429	184059681	13962749	1319	27006										
MAP3K13	0	genome.wustl.edu	37	chr3	185169088	185169088	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttaggcagagtaaacctCgaaaccgaccttcttttcgg	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185169088	185169088	C	T	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	nonsense	c.1183	p.R395*	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	111	0	0	83	29	25.89	-	-	-	T	185169088	C	T	185169088	4	4	275	1	0	0	0	0	0	1	0	0	9318	876	31	1	1205	1	MAP3K13	3	185169088	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1109407	185169088	12853342	1320	27007										
SENP2	0	genome.wustl.edu	37	chr3	185332508	185332508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagggacagaagaacggacGatctccttgaacttacagag	12	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185332508	185332508	G	A	SNP	SENP2	ENST00000296257	human	ensembl	69_37n	1	known	missense	c.1090	p.D364N	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP2	HGNC	ENSG00000163904	291	0	0	253	30	10.6	-	-	-	A	185332508	G	A	185332508	3	1	275	1	0	0	0	0	1	0	0	0	14135	1058	37	1	1132	1	SENP2	3	185332508	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	163420	185332508	12689922	1321	27008										
IGF2BP2	0	genome.wustl.edu	37	chr3	185404886	185404886	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgcatgatttcaagaatCatgcggcatgcttcagaagt	9	8	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185404886	185404886	C	A	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	missense	c.771	p.M257I	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	253	0	0	138	20	12.66	-	-	-	A	185404886	C	A	185404886	3	1	275	1	0	0	0	0	1	0	0	0	7628	826	29	2	1068	2	IGF2BP2	3	185404886	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	72378	185404886	12617544	1322	27009										
IGF2BP2	0	genome.wustl.edu	37	chr3	185410497	185410497	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctgcttacatttttgcttCttctcttgttgcatatgtga	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185410497	185410497	C	A	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	nonsense	c.394	p.E132*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	270	0	0	188	22	10.48	-	-	-	A	185410497	C	A	185410497	4	1	275	1	0	0	0	0	0	1	0	0	7628	922	32	2	1453	2	IGF2BP2	3	185410497	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5611	185410497	12611933	1323	27010										
DGKG	0	genome.wustl.edu	37	chr3	185983050	185983050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtacctgcatgacaagttCgcccttggcggacacgcagc	12	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185983050	185983050	C	T	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.1255	p.E419K	0.943	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	82	0	0	49	16	24.24	-	-	-	T	185983050	C	T	185983050	3	4	275	1	0	0	0	0	1	0	0	0	4505	893	31	1	1168	1	DGKG	3	185983050	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	572553	185983050	12039380	1324	27011										
DGKG	0	genome.wustl.edu	37	chr3	185993406	185993406	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttgcagtaggttggtttCttgaagtgcttcatggtcca	12	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	185993406	185993406	C	A	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.840	p.K280N	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	112	0	0	53	8	13.11	-	-	-	A	185993406	C	A	185993406	3	1	275	1	0	0	0	0	1	0	0	0	4505	912	32	2	1599	2	DGKG	3	185993406	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10356	185993406	12029024	1325	27012										
HRG	0	genome.wustl.edu	37	chr3	186390602	186390602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggaaggaactggttacttCgtggacttctctgtgcggaa	15	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	186390602	186390602	C	A	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	missense	c.585	p.F195L	0.002	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	664	0	0	471	163	25.67	-	-	-	A	186390602	C	A	186390602	3	1	275	1	0	0	0	0	1	0	0	0	7405	883	31	3	603	3	HRG	3	186390602	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397196	186390602	11631828	1326	27013										
RFC4	0	genome.wustl.edu	37	chr3	186507767	186507767	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatattcacgttaacaattCtgagataactgctgcatcac	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	186507767	186507767	C	T	SNP	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	silent	c.1083	p.Q361	0.980	NULL	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	218	0	0	107	48	30.97	-	-	-	T	186507767	C	T	186507767	2	4	275	1	0	0	0	0	0	0	0	1	13330	912	32	2		2	RFC4	3	186507767	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117165	186507767	11514663	1327	27014										
TP63	0	genome.wustl.edu	37	chr3	189526302	189526302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtcgagcaccgccaagtCggccacctggacggtaagag	14	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	189526302	189526302	C	T	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	missense	c.566	p.S189L	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	118	0	0	92	13	12.38	-	-	-	T	189526302	C	T	189526302	3	4	275	1	0	0	0	0	1	0	0	0	16488	893	31	1	626	1	TP63	3	189526302	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3018535	189526302	8496128	1328	27015										
LEPREL1	0	genome.wustl.edu	37	chr3	189700850	189700850	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaccttctcttaggtctcGatctatcttgggtgatagct	8	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	189700850	189700850	G	A	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	nonsense	c.1309	p.R437*	0.474	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	295	0	0	293	43	12.76	-	-	-	A	189700850	G	A	189700850	4	1	275	1	0	0	0	0	0	1	0	0	8784	1066	37	1	849	1	LEPREL1	3	189700850	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	174548	189700850	8321580	1329	27016										
IL1RAP	0	genome.wustl.edu	37	chr3	190347193	190347193	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcagattttgagcatcaaGaaagttacctctgaggatct	8	8	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	190347193	190347193	G	T	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.957	p.K319N	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	217	0	0	110	23	17.16	-	-	-	T	190347193	G	T	190347193	3	4	275	1	0	0	0	0	1	0	0	0	7714	933	33	2	983	2	IL1RAP	3	190347193	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	646343	190347193	7675237	1330	27017										
IL1RAP	0	genome.wustl.edu	37	chr3	190366152	190366152	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagatgagactttgagcttCattcagaaaagcagacgcct	9	9	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	190366152	190366152	C	A	SNP	IL1RAP	ENST00000072516	human	ensembl	69_37n	1	known	missense	c.1371	p.F457L	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	81	0	0	58	12	17.14	-	-	-	A	190366152	C	A	190366152	3	1	275	1	0	0	0	0	1	0	0	0	7714	825	29	2	1429	2	IL1RAP	3	190366152	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18959	190366152	7656278	1331	27018										
CCDC50	0	genome.wustl.edu	37	chr3	191098055	191098055	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagaaaactgcaagaagaaGaacttttggtgagcaaattt	9	6	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	191098055	191098055	G	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	nonsense	c.1084	p.E362*	1.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	274	0	0	130	54	29.35	-	-	-	T	191098055	G	T	191098055	4	4	275	1	0	0	0	0	0	1	0	0	2847	943	33	2	1110	2	CCDC50	3	191098055	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	731903	191098055	6924375	1332	27019										
OPA1	0	genome.wustl.edu	37	chr3	193364862	193364862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttttaataggacaagcaTgctaaaggcacaccaagtga	8	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	193364862	193364862	T	C	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	missense	c.1763	p.M588T	1.000	NULL	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	274	0	0	147	21	12.5	-	-	-	C	193364862	T	C	193364862	3	2	275	1	0	0	0	0	1	0	0	0	10944	1464	51	5	1837	5	OPA1	3	193364862	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2266807	193364862	4657568	1333	27020										
LRRC15	0	genome.wustl.edu	37	chr3	194080858	194080858	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattgtcgggtagagaagaGatgtggttgtcatagagcca	14	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	194080858	194080858	G	T	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.933	p.I311	0.300	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	92	0	0	82	36	30.51	-	-	-	T	194080858	G	T	194080858	2	4	275	1	0	0	0	0	0	0	0	1	9036	932	33	2		2	LRRC15	3	194080858	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	715996	194080858	3941572	1334	27021										
ATP13A3	0	genome.wustl.edu	37	chr3	194134543	194134543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgatgagcatagttacaCgccactgatatggtacacac	8	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	194134543	194134543	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.3428	p.R1143H	0.988	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	192	0	0	187	71	27.52	-	-	-	T	194134543	C	T	194134543	3	4	275	1	0	0	0	0	1	0	0	0	1129	536	19	1	260	1	ATP13A3	3	194134543	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	53685	194134543	3887887	1335	27022										
ATP13A3	0	genome.wustl.edu	37	chr3	194147864	194147864	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacccaaaaaaaacccaaaGattgaaatccaatgcagatg	6	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	194147864	194147864	G	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.3065	p.S1022Y	0.999	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	299	0	0	212	30	12.4	-	-	-	T	194147864	G	T	194147864	3	4	275	1	0	0	0	0	1	0	0	0	1129	942	33	2	635	2	ATP13A3	3	194147864	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13321	194147864	3874566	1336	27023										
TMEM44	0	genome.wustl.edu	37	chr3	194336413	194336413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgctcttcatcacacacGaaaggaaaataatctgagat	6	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	194336413	194336413	G	A	SNP	TMEM44	ENST00000392432	human	ensembl	69_37n	-1	known	missense	c.938	p.S313L	1.000	NULL	NULL	-	no_errors	TMEM44	HGNC	ENSG00000145014	147	1	0.68	141	27	15.88	-	-	-	A	194336413	G	A	194336413	3	1	275	1	0	0	0	0	1	0	0	0	16263	1059	37	1	539	1	TMEM44	3	194336413	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	188549	194336413	3686017	1337	27024										
C3orf43	0	genome.wustl.edu	37	chr3	196234827	196234827	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggggtcctaactgctttCcccttctcaattacctgcac	6	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	196234827	196234827	C	A	SNP	C3orf43	ENST00000397537	human	ensembl	69_37n	-1	known	silent	c.576	p.G192	0.944	NULL	NULL	-	no_errors	C3orf43	HGNC	ENSG00000214097	392	0	0	268	30	10.07	-	-	-	A	196234827	C	A	196234827	2	1	275	1	0	0	0	0	0	0	0	1	2250	842	30	2		2	C3orf43	3	196234827	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1898414	196234827	1787603	1338	27025										
IQCG	0	genome.wustl.edu	37	chr3	197619506	197619506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attccttccttaccatctttGccaggtcttgaaggtgtgct	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	3	197619506	197619506	G	A	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	missense	c.1088	p.A363V	0.990	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	338	0	0	278	54	16.22	-	-	-	A	197619506	G	A	197619506	3	1	275	1	0	0	0	0	1	0	0	0	7864	1319	46	4	255	4	IQCG	3	197619506	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1384679	197619506	402924	1339	27026										
ZNF718	0	genome.wustl.edu	37	chr4	155299	155299	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacccttaatttacataagaGaattcattctgcacaaaaat	3	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	155299	155299	G	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	91	0	0	48	8	14.29	-	-	-	T	155299	G	T	155299	1	4	275	0	1	0	0	0	0	0	0	0	18216	942	33	2		2	ZNF718	4	155299	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09		155299	190998977	1340	27027										
ZNF718	0	genome.wustl.edu	37	chr4	155887	155887	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaccttcctcaacataagaGaactcatactggaggaaaat	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	155887	155887	G	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.493	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	106	0	0	47	15	24.19	-	-	-	T	155887	G	T	155887	1	4	275	0	1	0	0	0	0	0	0	0	18216	942	33	2		2	ZNF718	4	155887	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	588	155887	190998389	1341	27028										
ZNF721	0	genome.wustl.edu	37	chr4	437282	437282	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctccagtatgaattCtcctatgtacataaaggttt	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	437282	437282	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.974	p.R325K	0.342	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	117	0	0	144	21	12.73	-	-	-	T	437282	C	T	437282	3	4	275	1	0	0	0	0	1	0	0	0	18218	913	32	2	1801	2	ZNF721	4	437282	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	281395	437282	190716994	1342	27029										
ZNF721	0	genome.wustl.edu	37	chr4	438065	438065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattaattccattataaactCccttctgcactttacacacg	2	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	438065	438065	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.191	p.G64E	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	105	0	0	108	13	10.74	-	-	-	T	438065	C	T	438065	3	4	275	1	0	0	0	0	1	0	0	0	18218	855	30	2	2584	2	ZNF721	4	438065	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	783	438065	190716211	1343	27030										
MAEA	0	genome.wustl.edu	37	chr4	1306007	1306007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggacaccccttttgtctcGaaaatgagtcctaagacagg	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	1306007	1306007	G	A	SNP	MAEA	ENST00000509254	human	ensembl	69_37n	1	known	missense	c.310	p.E104K	0.000	NULL	NULL	-	no_errors	MAEA	HGNC	ENSG00000090316	18	0	0	4	5	55.56	-	-	-	A	1306007	G	A	1306007	3	1	275	1	0	0	0	0	1	0	0	0	9220	1073	37	1		1	MAEA	4	1306007	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	867942	1306007	189848269	1344	27031										
LETM1	0	genome.wustl.edu	37	chr4	1818528	1818528	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgcgagatcaagccatcGatctgcccgatcatttgctg	10	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	1818528	1818528	G	A	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	silent	c.1857	p.I619	0.005	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	115	0	0	51	12	19.05	-	-	-	A	1818528	G	A	1818528	2	1	275	1	0	0	0	0	0	0	0	1	8788	1048	37	1		1	LETM1	4	1818528	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	512521	1818528	189335748	1345	27032										
WHSC2	0	genome.wustl.edu	37	chr4	1985184	1985184	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaggtcctccgtgtgctcGctcagcttgatctggatcac	12	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	1985184	1985184	G	A	SNP	WHSC2	ENST00000382882	human	ensembl	69_37n	-1	known	silent	c.1482	p.S494	1.000	NULL	NULL	-	no_errors	WHSC2	HGNC	ENSG00000185049	85	0	0	34	4	10.26	-	-	-	A	1985184	G	A	1985184	2	1	275	1	0	0	0	0	0	0	0	1	17461	1078	38	1		1	WHSC2	4	1985184	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166656	1985184	189169092	1346	27033										
TMEM128	0	genome.wustl.edu	37	chr4	4247948	4247948	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgctagtgtggaagttttCtttaagggttttaaagaagt	11	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	4247948	4247948	C	A	SNP	TMEM128	ENST00000382753	human	ensembl	69_37n	-1	known	nonsense	c.220	p.E74*	1.000	NULL	NULL	-	no_errors	TMEM128	HGNC	ENSG00000132406	181	0	0	67	72	51.43	-	-	-	A	4247948	C	A	4247948	4	1	275	1	0	0	0	0	0	1	0	0	16136	922	32	2	289	2	TMEM128	4	4247948	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2262764	4247948	186906328	1347	27034										
LYAR	0	genome.wustl.edu	37	chr4	4269647	4269647	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgactttgtcctttaatAacttaaaggtagggttcttg	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	4269647	4269647	A	C	SNP	LYAR	ENST00000343470	human	ensembl	69_37n	-1	known	nonsense	c.1109	p.L370*	0.055	NULL	pfam_Znf_C2H2_LYAR	-	no_errors	LYAR	HGNC	ENSG00000145220	248	0	0	128	55	30.05	-	-	-	C	4269647	A	C	4269647	4	2	275	1	0	0	0	0	0	1	0	0	9170	372	13	5	34	5	LYAR	4	4269647	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	21699	4269647	186884629	1348	27035										
ZBTB49	0	genome.wustl.edu	37	chr4	4317658	4317658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttagtaaagcacagaattCggcacacgggggagcggcct	14	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	4317658	4317658	C	T	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	missense	c.1582	p.R528W	0.949	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	253	0	0	114	25	17.99	-	-	-	T	4317658	C	T	4317658	3	4	275	1	0	0	0	0	1	0	0	0	17646	875	31	1	1604	1	ZBTB49	4	4317658	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48011	4317658	186836618	1349	27036										
EVC	0	genome.wustl.edu	37	chr4	5747026	5747026	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacatcaccctggctgatgtGgaaaagaaggagagagaata	12	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	5747026	5747026	G	T	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	silent	c.897	p.V299	0.981	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	345	0	0	212	85	28.62	-	-	-	T	5747026	G	T	5747026	2	4	275	1	0	0	0	0	0	0	0	1	5322	1335	47	4		4	EVC	4	5747026	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1429368	5747026	185407250	1350	27037										
CRMP1	0	genome.wustl.edu	37	chr4	5851150	5851150	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatctccattttctgcatggAccaagatcacagctcccagg	7	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	5851150	5851150	A	G	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.932	p.V311A	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	269	0	0	145	55	27.5	-	-	-	G	5851150	A	G	5851150	3	3	275	1	0	0	0	0	1	0	0	0	3920	275	10	5	1164	5	CRMP1	4	5851150	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	104124	5851150	185303126	1351	27038										
KIAA0232	0	genome.wustl.edu	37	chr4	6862902	6862902	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttagtaatggcacaattGaagaaaagcctgctttgtac	8	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	6862902	6862902	G	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	nonsense	c.793	p.E265*	0.987	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	95	0	0	73	15	17.05	-	-	-	T	6862902	G	T	6862902	4	4	275	1	0	0	0	0	0	1	0	0	8215	1291	45	2	811	2	KIAA0232	4	6862902	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1011752	6862902	184291374	1352	27039										
KIAA0232	0	genome.wustl.edu	37	chr4	6863223	6863223	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggtaagagacctttaaaaGaaatagggagaaaagatcct	12	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	6863223	6863223	G	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	nonsense	c.1114	p.E372*	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	72	0	0	61	18	22.78	-	-	-	T	6863223	G	T	6863223	4	4	275	1	0	0	0	0	0	1	0	0	8215	943	33	2	1132	2	KIAA0232	4	6863223	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	321	6863223	184291053	1353	27040										
TBC1D14	0	genome.wustl.edu	37	chr4	6925232	6925232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtcaatctcaaggcgccccGactcctctccgcgcctgagt	9	18	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	6925232	6925232	G	A	SNP	TBC1D14	ENST00000409757	human	ensembl	69_37n	1	known	missense	c.116	p.R39Q	0.127	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D14	HGNC	ENSG00000132405	47	0	0	29	5	14.71	-	-	-	A	6925232	G	A	6925232	3	1	275	1	0	0	0	0	1	0	0	0	15695	1058	37	1	118	1	TBC1D14	4	6925232	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	62009	6925232	184229044	1354	27041										
SH3TC1	0	genome.wustl.edu	37	chr4	8216249	8216249	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacagtgaccaggaccggatCgtggtgacgtttaagacttt	12	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	8216249	8216249	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	silent	c.423	p.I141	0.589	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	54	0	0	22	13	37.14	-	-	-	T	8216249	C	T	8216249	2	4	275	1	0	0	0	0	0	0	0	1	14350	874	31	1		1	SH3TC1	4	8216249	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1291017	8216249	182938027	1355	27042										
ACOX3	0	genome.wustl.edu	37	chr4	8368698	8368698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagtcccactagagcttcGatttcagacttcctatgaca	7	13	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	8368698	8368698	G	A	SNP	ACOX3	ENST00000356406	human	ensembl	69_37n	-1	known	missense	c.2093	p.S698L	0.203	NULL	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008	90	0	0	25	7	21.88	-	-	-	A	8368698	G	A	8368698	3	1	275	1	0	0	0	0	1	0	0	0	160	1059	37	1	13	1	ACOX3	4	8368698	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	152449	8368698	182785578	1356	27043										
CLNK	0	genome.wustl.edu	37	chr4	10567663	10567663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agattcctttataggccgggCtggtaaaattttaatcgact	9	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	10567663	10567663	C	T	SNP	CLNK	ENST00000226951	human	ensembl	69_37n	-1	known	missense	c.262	p.A88T	0.992	NULL	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	104	0	0	45	16	26.23	-	-	-	T	10567663	C	T	10567663	3	4	275	1	0	0	0	0	1	0	0	0	3577	797	28	4	1080	4	CLNK	4	10567663	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2198965	10567663	180586613	1357	27044										
CC2D2A	0	genome.wustl.edu	37	chr4	15554924	15554924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacagcagaacatcggatttCggaggtaatacatggcaaga	11	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	15554924	15554924	C	T	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.2482	p.R828W	0.004	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	162	0	0	107	44	29.14	-	-	-	T	15554924	C	T	15554924	3	4	275	1	0	0	0	0	1	0	0	0	2753	875	31	1	2755	1	CC2D2A	4	15554924	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4987261	15554924	175599352	1358	27045										
FBXL5	0	genome.wustl.edu	37	chr4	15642442	15642442	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttcatgtgaggaagaaaaTctcttgtaaaagcctccaat	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	15642442	15642442	T	G	SNP	FBXL5	ENST00000341285	human	ensembl	69_37n	-1	known	missense	c.365	p.D122A	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL5	HGNC	ENSG00000118564	241	0	0	112	44	28.03	-	-	-	G	15642442	T	G	15642442	3	3	275	1	0	0	0	0	1	0	0	0	5768	1435	50	5	1746	5	FBXL5	4	15642442	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	87518	15642442	175511834	1359	27046										
CD38	0	genome.wustl.edu	37	chr4	15826615	15826615	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttgctgatgacctcacaTggtgtggtgaattcaacact	9	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	15826615	15826615	T	G	SNP	CD38	ENST00000226279	human	ensembl	69_37n	1	known	missense	c.475	p.W159G	0.959	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468	410	0	0	214	62	22.46	-	-	-	G	15826615	T	G	15826615	3	3	275	1	0	0	0	0	1	0	0	0	3038	1464	51	5	485	5	CD38	4	15826615	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	184173	15826615	175327661	1360	27047										
PROM1	0	genome.wustl.edu	37	chr4	16000007	16000007	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtataatgcaaatattgataCctgtaaacttgttcaaaagt	6	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	16000007	16000007	C	T	SNP	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	splice_site	c.1682+1	e14+1	1.000	-	-	-	no_errors	PROM1	HGNC	ENSG00000007062	202	0	0	109	38	25.85	-	-	-	T	16000007	C	T	16000007	5	4	275	1	0	0	0	0	0	0	1	0	12636	521	18	4	966	4	PROM1	4	16000007	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	173392	16000007	175154269	1361	27048										
LAP3	0	genome.wustl.edu	37	chr4	17609060	17609060	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctgcagcattcctgaaaGaattcgtaactcatcctaag	7	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	17609060	17609060	G	T	SNP	LAP3	ENST00000226299	human	ensembl	69_37n	1	known	nonsense	c.1408	p.E470*	1.000	pfam_Peptidase_M17_C	pfam_Peptidase_M17_C,pfam_Peptidase_M17_N,prints_Peptidase_M17	-	no_errors	LAP3	HGNC	ENSG00000002549	100	0	0	69	19	21.59	-	-	-	T	17609060	G	T	17609060	4	4	275	1	0	0	0	0	0	1	0	0	8677	943	33	2	1458	2	LAP3	4	17609060	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1609053	17609060	173545216	1362	27049										
NCAPG	0	genome.wustl.edu	37	chr4	17841404	17841404	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaagccttgagttctttaGaactcagtagccatcttgca	7	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	17841404	17841404	G	T	SNP	NCAPG	ENST00000251496	human	ensembl	69_37n	1	known	nonsense	c.2572	p.E858*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	228	0	0	97	36	27.07	-	-	-	T	17841404	G	T	17841404	4	4	275	1	0	0	0	0	0	1	0	0	10279	943	33	2	2638	2	NCAPG	4	17841404	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	232344	17841404	173312872	1363	27050										
NCAPG	0	genome.wustl.edu	37	chr4	17843964	17843964	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgacagtttcagctaggacGaacaggaggtgtcagactgc	14	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	17843964	17843964	G	A	SNP	NCAPG	ENST00000251496	human	ensembl	69_37n	1	known	silent	c.2886	p.T962	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	234	0	0	103	24	18.9	-	-	-	A	17843964	G	A	17843964	2	1	275	1	0	0	0	0	0	0	0	1	10279	1045	37	1		1	NCAPG	4	17843964	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2560	17843964	173310312	1364	27051										
SLIT2	0	genome.wustl.edu	37	chr4	20521061	20521061	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttatttgaaggactgtTttccttacagctcctgtaag	8	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	20521061	20521061	T	G	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.1115	p.F372C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	139	0	0	74	9	10.84	-	-	-	G	20521061	T	G	20521061	3	3	275	1	0	0	0	0	1	0	0	0	14829	1841	64	5	1161	5	SLIT2	4	20521061	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2677097	20521061	170633215	1365	27052										
DHX15	0	genome.wustl.edu	37	chr4	24538722	24538722	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgtcagatgatctccatCtatgtgggcaaatctcatct	8	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	24538722	24538722	C	T	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.1861	p.D621N	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	325	0	0	241	32	11.72	-	-	-	T	24538722	C	T	24538722	3	4	275	1	0	0	0	0	1	0	0	0	4537	913	32	2	542	2	DHX15	4	24538722	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4017661	24538722	166615554	1366	27053										
DHX15	0	genome.wustl.edu	37	chr4	24541803	24541803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttgcaataaccatttttgCgagctgtggatctagaggaa	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	24541803	24541803	C	T	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.1714	p.A572T	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	195	0	0	130	27	17.2	-	-	-	T	24541803	C	T	24541803	3	4	275	1	0	0	0	0	1	0	0	0	4537	768	27	1	693	1	DHX15	4	24541803	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3081	24541803	166612473	1367	27054										
DHX15	0	genome.wustl.edu	37	chr4	24550643	24550643	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttacaggcttcatcaatTtcctacaaaataaaagtgag	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	24550643	24550643	T	G	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.1083	p.E361D	1.000	pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	161	0	0	99	33	25	-	-	-	G	24550643	T	G	24550643	3	3	275	1	0	0	0	0	1	0	0	0	4537	1838	64	5	1340	5	DHX15	4	24550643	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	8840	24550643	166603633	1368	27055										
LGI2	0	genome.wustl.edu	37	chr4	25026467	25026467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcaggtcacggaggccacGaaaggcatttcttgaaatgg	13	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	25026467	25026467	G	A	SNP	LGI2	ENST00000382114	human	ensembl	69_37n	-1	known	missense	c.388	p.R130C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	395	0	0	267	45	14.42	-	-	-	A	25026467	G	A	25026467	3	1	275	1	0	0	0	0	1	0	0	0	8807	1058	37	1	1269	1	LGI2	4	25026467	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	475824	25026467	166127809	1369	27056										
ZCCHC4	0	genome.wustl.edu	37	chr4	25315704	25315704	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaaaggtgacccaagggaAagaagaaactcggaggtttt	13	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	25315704	25315704	A	G	SNP	ZCCHC4	ENST00000302874	human	ensembl	69_37n	1	known	missense	c.164	p.K55R	0.996	pfam_Znf_GRF	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228	404	0	0	175	85	32.69	-	-	-	G	25315704	A	G	25315704	3	3	275	1	0	0	0	0	1	0	0	0	17686	14	1	5	170	5	ZCCHC4	4	25315704	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	289237	25315704	165838572	1370	27057										
SEL1L3	0	genome.wustl.edu	37	chr4	25849037	25849037	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggcgggatggtctgcagGagggtataattctttgctac	14	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	25849037	25849037	G	A	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	silent	c.612	p.L204	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	172	0	0	149	17	10.24	-	-	-	A	25849037	G	A	25849037	2	1	275	1	0	0	0	0	0	0	0	1	14100	1161	41	2		2	SEL1L3	4	25849037	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	533333	25849037	165305239	1371	27058										
CCKAR	0	genome.wustl.edu	37	chr4	26491017	26491017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtccgcatccgcttgttccGaatcagcacggtgatgacca	10	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	26491017	26491017	G	A	SNP	CCKAR	ENST00000295589	human	ensembl	69_37n	-1	known	missense	c.202	p.R68W	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394	464	0	0	221	79	26.25	-	-	-	A	26491017	G	A	26491017	3	1	275	1	0	0	0	0	1	0	0	0	2907	1057	37	1	1100	1	CCKAR	4	26491017	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	641980	26491017	164663259	1372	27059										
STIM2	0	genome.wustl.edu	37	chr4	27010432	27010432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttacgagaacgactttttCgctggcaacaaattgagaag	10	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	27010432	27010432	C	T	SNP	STIM2	ENST00000382009	human	ensembl	69_37n	1	known	missense	c.1582	p.R528C	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689	95	0	0	71	17	19.32	-	-	-	T	27010432	C	T	27010432	3	4	275	1	0	0	0	0	1	0	0	0	15375	884	31	1	1363	1	STIM2	4	27010432	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	519415	27010432	164143844	1373	27060										
PCDH7	0	genome.wustl.edu	37	chr4	30724797	30724797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatggggatctttgccatcGatcccgattctggggacatc	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	30724797	30724797	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	69_37n	1	known	missense	c.1753	p.D585N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	31	0	0	12	5	29.41	-	-	-	A	30724797	G	A	30724797	3	1	275	1	0	0	0	0	1	0	0	0	11589	1058	37	1	1755	1	PCDH7	4	30724797	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3714365	30724797	160429479	1374	27061										
ARAP2	0	genome.wustl.edu	37	chr4	36214110	36214110	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattctttatagatcgcttCtattaaaaaagcaaacaaac	3	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	36214110	36214110	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	splice_site	c.1042-1	e4-1	0.966	-	-	-	no_errors	ARAP2	HGNC	ENSG00000047365	369	0	0	231	33	12.5	-	-	-	A	36214110	C	A	36214110	5	1	275	1	0	0	0	0	0	0	1	0	841	927	32	2	4189	2	ARAP2	4	36214110	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5489313	36214110	154940166	1375	27062										
ARAP2	0	genome.wustl.edu	37	chr4	36214928	36214928	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaagatggaagatgaattCtcctcatttgaatcttttag	9	5	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	36214928	36214928	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.978	p.E326D	0.999	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	258	0	0	136	56	29.17	-	-	-	A	36214928	C	A	36214928	3	1	275	1	0	0	0	0	1	0	0	0	841	912	32	2	4256	2	ARAP2	4	36214928	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	818	36214928	154939348	1376	27063										
PGM2	0	genome.wustl.edu	37	chr4	37848904	37848904	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaactgttttatttgcatttGaagaagctattggtaagaag	9	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	37848904	37848904	G	T	SNP	PGM2	ENST00000381967	human	ensembl	69_37n	1	known	nonsense	c.1270	p.E424*	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299	176	0	0	119	19	13.77	-	-	-	T	37848904	G	T	37848904	4	4	275	1	0	0	0	0	0	1	0	0	11872	1291	45	2	1308	2	PGM2	4	37848904	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1633976	37848904	153305372	1377	27064										
TBC1D1	0	genome.wustl.edu	37	chr4	37903762	37903762	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaacatctgctttctaacGaggtctcggtggattttggc	12	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	37903762	37903762	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	missense	c.46	p.E16K	0.737	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	126	0	0	65	13	16.67	-	-	-	A	37903762	G	A	37903762	3	1	275	1	0	0	0	0	1	0	0	0	15689	1059	37	1	48	1	TBC1D1	4	37903762	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	54858	37903762	153250514	1378	27065										
TLR1	0	genome.wustl.edu	37	chr4	38799039	38799039	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgaaagcaacattgagttCttgcaaagcttccagtttta	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	38799039	38799039	C	A	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	nonsense	c.1414	p.E472*	1.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	365	0	0	235	35	12.96	-	-	-	A	38799039	C	A	38799039	4	1	275	1	0	0	0	0	0	1	0	0	16044	922	32	2	950	2	TLR1	4	38799039	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	895277	38799039	152355237	1379	27066										
TLR1	0	genome.wustl.edu	37	chr4	38800318	38800318	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatttaagattgttgttttCtgggataggtctttaggaac	10	3	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	38800318	38800318	C	A	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	missense	c.135	p.Q45H	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	163	0	0	73	28	27.72	-	-	-	A	38800318	C	A	38800318	3	1	275	1	0	0	0	0	1	0	0	0	16044	912	32	2	2229	2	TLR1	4	38800318	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1279	38800318	152353958	1380	27067										
KLHL5	0	genome.wustl.edu	37	chr4	39083600	39083600	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggccgccttgaattaaaaGaagataatattgagtgcctg	10	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	39083600	39083600	G	T	SNP	KLHL5	ENST00000359687	human	ensembl	69_37n	1	known	nonsense	c.859	p.E287*	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL5	HGNC	ENSG00000109790	286	0	0	156	46	22.77	-	-	-	T	39083600	G	T	39083600	4	4	275	1	0	0	0	0	0	1	0	0	8445	943	33	2	873	2	KLHL5	4	39083600	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	283282	39083600	152070676	1381	27068										
RFC1	0	genome.wustl.edu	37	chr4	39329255	39329255	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggtgataaaggcttattCttggtcttagtgttttcttc	9	5	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	39329255	39329255	C	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.453	p.K151N	0.540	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	488	0	0	254	93	26.8	-	-	-	A	39329255	C	A	39329255	3	1	275	1	0	0	0	0	1	0	0	0	13327	912	32	2	3074	2	RFC1	4	39329255	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245655	39329255	151825021	1382	27069										
RPL9	0	genome.wustl.edu	37	chr4	39456216	39456216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagacatagataccatccaAaaatttcctgatatccttgt	5	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	39456216	39456216	A	C	SNP	RPL9	ENST00000295955	human	ensembl	69_37n	-1	known	missense	c.526	p.L176V	1.000	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	-	no_errors	RPL9	HGNC	ENSG00000163682	263	1	0.38	174	36	17.14	-	-	-	C	39456216	A	C	39456216	3	2	275	1	0	0	0	0	1	0	0	0	13689	11	1	5	56	5	RPL9	4	39456216	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	126961	39456216	151698060	1383	27070										
LIMCH1	0	genome.wustl.edu	37	chr4	41694357	41694357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggacggatgttaggattcGaaatggtctcctgaactgta	13	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	41694357	41694357	G	A	SNP	LIMCH1	ENST00000503057	human	ensembl	69_37n	1	known	missense	c.4334	p.R1445Q	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042	394	0	0	276	49	15.08	-	-	-	A	41694357	G	A	41694357	3	1	275	1	0	0	0	0	1	0	0	0	8852	1058	37	1	3312	1	LIMCH1	4	41694357	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2238141	41694357	149459919	1384	27071										
SLC30A9	0	genome.wustl.edu	37	chr4	42020145	42020145	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagaaggtataggcacaGaactcaaagctccacttaag	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	42020145	42020145	G	T	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	nonsense	c.292	p.E98*	0.749	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	255	1	0.39	163	23	12.37	-	-	-	T	42020145	G	T	42020145	4	4	275	1	0	0	0	0	0	1	0	0	14651	943	33	2	302	2	SLC30A9	4	42020145	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	325788	42020145	149134131	1385	27072										
SLC30A9	0	genome.wustl.edu	37	chr4	42037311	42037311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctatttagaaaccaaaaAatattaagagaatacagaga	8	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	42037311	42037311	A	C	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	missense	c.630	p.K210N	0.997	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	107	0	0	83	18	17.82	-	-	-	C	42037311	A	C	42037311	3	2	275	1	0	0	0	0	1	0	0	0	14651	11	1	5	656	5	SLC30A9	4	42037311	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	17166	42037311	149116965	1386	27073										
SLC30A9	0	genome.wustl.edu	37	chr4	42080244	42080244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataggaaattcaagaagtgAaaactcctgaagaactagag	9	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	42080244	42080244	A	G	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	missense	c.1564	p.K522E	1.000	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	102	0	0	78	12	13.33	-	-	-	G	42080244	A	G	42080244	3	3	275	1	0	0	0	0	1	0	0	0	14651	247	9	5	1630	5	SLC30A9	4	42080244	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	42933	42080244	149074032	1387	27074										
ATP8A1	0	genome.wustl.edu	37	chr4	42588435	42588435	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggactttcacactcaattCtgccagaaatcctcatcaaa	4	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	42588435	42588435	C	A	SNP	ATP8A1	ENST00000381668	human	ensembl	69_37n	-1	known	missense	c.653	p.R218I	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A1	HGNC	ENSG00000124406	297	0	0	181	27	12.98	-	-	-	A	42588435	C	A	42588435	3	1	275	1	0	0	0	0	1	0	0	0	1196	913	32	2	2957	2	ATP8A1	4	42588435	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	508191	42588435	148565841	1388	27075										
GRXCR1	0	genome.wustl.edu	37	chr4	42964948	42964948	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttgaccgtgtagtgattTataccacctgccttcgtgtg	9	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	42964948	42964948	T	G	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	1	known	missense	c.424	p.Y142D	1.000	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	306	0	0	178	29	14.01	-	-	-	G	42964948	T	G	42964948	3	3	275	1	0	0	0	0	1	0	0	0	6863	1754	61	5	430	5	GRXCR1	4	42964948	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	376513	42964948	148189328	1389	27076										
COX7B2	0	genome.wustl.edu	37	chr4	46736981	46736981	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggttactgatgtttccactCttttggggtaactctgccaa	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	46736981	46736981	C	A	SNP	COX7B2	ENST00000302930	human	ensembl	69_37n	-1	known	nonsense	c.229	p.E77*	0.363	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	-	no_errors	COX7B2	HGNC	ENSG00000170516	251	0	0	188	25	11.74	-	-	-	A	46736981	C	A	46736981	4	1	275	1	0	0	0	0	0	1	0	0	3813	922	32	2	20	2	COX7B2	4	46736981	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3772033	46736981	144417295	1390	27077										
GABRA4	0	genome.wustl.edu	37	chr4	46967115	46967115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagttgacagcagcaaactCgataagggccgaaaatacaa	9	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	46967115	46967115	C	T	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1006	p.E336K	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	601	0	0	315	131	29.18	-	-	-	T	46967115	C	T	46967115	3	4	275	1	0	0	0	0	1	0	0	0	6212	893	31	1	666	1	GABRA4	4	46967115	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	230134	46967115	144187161	1391	27078										
GABRB1	0	genome.wustl.edu	37	chr4	47163373	47163373	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatagggtagctgaccaactCtgggtaccagacacctactt	9	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	47163373	47163373	C	A	SNP	GABRB1	ENST00000295454	human	ensembl	69_37n	1	known	silent	c.348	p.L116	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	413	0	0	201	32	13.73	-	-	-	A	47163373	C	A	47163373	2	1	275	1	0	0	0	0	0	0	0	1	6215	900	32	2		2	GABRB1	4	47163373	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	196258	47163373	143990903	1392	27079										
GABRB1	0	genome.wustl.edu	37	chr4	47427693	47427693	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttctttttgccatcaggtCgacgcccacggtaacattct	8	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	47427693	47427693	C	T	SNP	GABRB1	ENST00000295454	human	ensembl	69_37n	1	known	silent	c.1083	p.V361	0.003	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	94	0	0	33	19	36.54	-	-	-	T	47427693	C	T	47427693	2	4	275	1	0	0	0	0	0	0	0	1	6215	871	31	1		1	GABRB1	4	47427693	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	264320	47427693	143726583	1393	27080										
ATP10D	0	genome.wustl.edu	37	chr4	47525087	47525087	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttactgttggggactttattCgcctctcctgcaacgaggtc	10	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	47525087	47525087	C	A	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.544	p.R182S	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	221	0	0	150	36	19.35	-	-	-	A	47525087	C	A	47525087	3	1	275	1	0	0	0	0	1	0	0	0	1122	884	31	3	554	3	ATP10D	4	47525087	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97394	47525087	143629189	1394	27081										
ATP10D	0	genome.wustl.edu	37	chr4	47574185	47574185	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaaggtgatggtgccaatGatgttagcatgatacaagtg	13	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	47574185	47574185	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.3178	p.D1060Y	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	717	1	0.14	506	71	12.28	-	-	-	T	47574185	G	T	47574185	3	4	275	1	0	0	0	0	1	0	0	0	1122	1290	45	2	3240	2	ATP10D	4	47574185	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49098	47574185	143580091	1395	27082										
CNGA1	0	genome.wustl.edu	37	chr4	47938449	47938449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcggttctatgtagagtCgatgggcccactttccgctc	10	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	47938449	47938449	C	T	SNP	CNGA1	ENST00000402813	human	ensembl	69_37n	-1	known	missense	c.2269	p.D757N	0.223	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	176	0	0	98	12	10.91	-	-	-	T	47938449	C	T	47938449	3	4	275	1	0	0	0	0	1	0	0	0	3626	884	31	1	14	1	CNGA1	4	47938449	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	364264	47938449	143215827	1396	27083										
NIPAL1	0	genome.wustl.edu	37	chr4	48037676	48037676	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaatatattggtttatatTtcaatctgttccttgattgg	6	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	48037676	48037676	T	G	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	1	known	missense	c.720	p.I240M	0.881	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	106	0	0	101	15	12.93	-	-	-	G	48037676	T	G	48037676	3	3	275	1	0	0	0	0	1	0	0	0	10496	1829	64	5	742	5	NIPAL1	4	48037676	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	99227	48037676	143116600	1397	27084										
FRYL	0	genome.wustl.edu	37	chr4	48517136	48517136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcctcttcacagactgactCggggtaactttcaggagcta	9	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	48517136	48517136	C	T	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.7846	p.E2616K	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	365	0	0	229	32	12.26	-	-	-	T	48517136	C	T	48517136	3	4	275	1	0	0	0	0	1	0	0	0	6113	893	31	1	1231	1	FRYL	4	48517136	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	479460	48517136	142637140	1398	27085										
CWH43	0	genome.wustl.edu	37	chr4	49019329	49019329	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggcataaagcctatgagaGaaaactgggcaaagtggtaa	12	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	49019329	49019329	G	T	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.1250	p.R417I	0.108	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	522	0	0	285	102	26.36	-	-	-	T	49019329	G	T	49019329	3	4	275	1	0	0	0	0	1	0	0	0	4104	942	33	2	1284	2	CWH43	4	49019329	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	502193	49019329	142134947	1399	27086										
SGCB	0	genome.wustl.edu	37	chr4	52890182	52890182	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccatgttctggctggttaCttgcaccttgaagagcgtcc	11	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	52890182	52890182	C	A	SNP	SGCB	ENST00000381431	human	ensembl	69_37n	-1	known	missense	c.898	p.V300L	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCB	HGNC	ENSG00000163069	116	0	0	45	19	29.69	-	-	-	A	52890182	C	A	52890182	3	1	275	1	0	0	0	0	1	0	0	0	14288	565	20	4	62	4	SGCB	4	52890182	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3870853	52890182	138264094	1400	27087										
PDGFRA	0	genome.wustl.edu	37	chr4	55129883	55129883	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacggattatttagtcatCgtggaggatgatgattctgc	12	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	55129883	55129883	C	T	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	silent	c.417	p.I139	0.001	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	146	0	0	116	28	19.31	-	-	-	T	55129883	C	T	55129883	2	4	275	1	0	0	0	0	0	0	0	1	11734	874	31	1		1	PDGFRA	4	55129883	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2239701	55129883	136024393	1401	27088										
KIT	0	genome.wustl.edu	37	chr4	55565921	55565921	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtactcaacgtggaaaagaGaaaacagtcaggtgagtgaa	12	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	55565921	55565921	G	T	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	nonsense	c.745	p.E249*	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	388	0	0	274	34	11.04	-	-	-	T	55565921	G	T	55565921	4	4	275	1	0	0	0	0	0	1	0	0	8382	943	33	2	759	2	KIT	4	55565921	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	436038	55565921	135588355	1402	27089										
KIT	0	genome.wustl.edu	37	chr4	55569904	55569904	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagactaaactacaggaGaaatataatagctggcatca	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	55569904	55569904	G	T	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.771	p.E257D	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	97	0	0	94	15	13.76	-	-	-	T	55569904	G	T	55569904	3	4	275	1	0	0	0	0	1	0	0	0	8382	933	33	2	789	2	KIT	4	55569904	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3983	55569904	135584372	1403	27090										
KDR	0	genome.wustl.edu	37	chr4	55961799	55961799	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtaagtggacaggtttccaAatttgcagaattccacaatc	9	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	55961799	55961799	A	C	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.2762	p.F921C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	378	0	0	190	69	26.64	-	-	-	C	55961799	A	C	55961799	3	2	275	1	0	0	0	0	1	0	0	0	8192	14	1	5	1352	5	KDR	4	55961799	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	391895	55961799	135192477	1404	27091										
CLOCK	0	genome.wustl.edu	37	chr4	56336963	56336963	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatgattgctaaaaaaaaaCcatcaagagcctgaaattaa	5	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56336963	56336963	C	A	SNP	CLOCK	ENST00000309964	human	ensembl	69_37n	-1	known	missense	c.359	p.G120V	1.000	pfam_PAS_fold,smart_PAS,pfscan_PAS,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852	122	1	0.81	81	20	19.8	-	-	-	A	56336963	C	A	56336963	3	1	275	1	0	0	0	0	1	0	0	0	3579	507	18	4	2245	4	CLOCK	4	56336963	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	375164	56336963	134817313	1405	27092										
PDCL2	0	genome.wustl.edu	37	chr4	56422836	56422836	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctggggttttcttccaaaTcagtctgtattgctccaact	7	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56422836	56422836	T	A	SNP	PDCL2	ENST00000295645	human	ensembl	69_37n	-1	known	missense	c.614	p.D205V	1.000	superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	-	no_errors	PDCL2	HGNC	ENSG00000163440	129	0	0	153	32	17.3	-	-	-	A	56422836	T	A	56422836	3	1	275	1	0	0	0	0	1	0	0	0	11700	1435	50	5	115	5	PDCL2	4	56422836	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	85873	56422836	134731440	1406	27093										
NMU	0	genome.wustl.edu	37	chr4	56466709	56466709	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaataaaaaatatcctcGactttgacttgcaaagggac	7	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56466709	56466709	G	A	SNP	NMU	ENST00000264218	human	ensembl	69_37n	-1	known	nonsense	c.469	p.R157*	0.000	pfam_NMU_C,smart_NMU_C	pfam_NMU_C,smart_NMU_C	-	no_errors	NMU	HGNC	ENSG00000109255	131	0	0	65	12	15.58	-	-	-	A	56466709	G	A	56466709	4	1	275	1	0	0	0	0	0	1	0	0	10577	1066	37	1	63	1	NMU	4	56466709	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43873	56466709	134687567	1407	27094										
EXOC1	0	genome.wustl.edu	37	chr4	56724545	56724545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttacaccaaatgatgaacGcctgctgagcattgtgaatg	9	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56724545	56724545	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.56	p.R19H	1.000	NULL	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	208	0	0	89	36	28.8	-	-	-	A	56724545	G	A	56724545	3	1	275	1	0	0	0	0	1	0	0	0	5337	1087	38	1	58	1	EXOC1	4	56724545	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	257836	56724545	134429731	1408	27095										
EXOC1	0	genome.wustl.edu	37	chr4	56730461	56730461	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagcagcactgctgaaaaGaatgcatttatttcatgcat	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56730461	56730461	G	T	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.324	p.K108N	1.000	NULL	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	85	0	0	50	24	32.43	-	-	-	T	56730461	G	T	56730461	3	4	275	1	0	0	0	0	1	0	0	0	5337	933	33	2	334	2	EXOC1	4	56730461	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5916	56730461	134423815	1409	27096										
EXOC1	0	genome.wustl.edu	37	chr4	56756404	56756404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaggtcttcatggaagttCggggaaattaactggatcta	11	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	56756404	56756404	C	T	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.1391	p.S464L	1.000	pfam_Exocyst_Exoc1	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	227	0	0	101	19	15.7	-	-	-	T	56756404	C	T	56756404	3	4	275	1	0	0	0	0	1	0	0	0	5337	893	31	1	1433	1	EXOC1	4	56756404	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25943	56756404	134397872	1410	27097										
KIAA1211	0	genome.wustl.edu	37	chr4	57190350	57190350	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccactgctctgccagaagaGaagaggcccgagactgcagt	12	12	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	57190350	57190350	G	T	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	missense	c.3459	p.E1153D	1.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	152	0	0	70	17	19.54	-	-	-	T	57190350	G	T	57190350	3	4	275	1	0	0	0	0	1	0	0	0	8267	933	33	2	3485	2	KIAA1211	4	57190350	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	433946	57190350	133963926	1411	27098										
PPAT	0	genome.wustl.edu	37	chr4	57265430	57265430	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcatctacaagaacaattCttttgcctttaaagttgtct	4	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	57265430	57265430	C	A	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	missense	c.1151	p.R384I	1.000	pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	276	0	0	172	32	15.69	-	-	-	A	57265430	C	A	57265430	3	1	275	1	0	0	0	0	1	0	0	0	12375	913	32	2	414	2	PPAT	4	57265430	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75080	57265430	133888846	1412	27099										
CENPC1	0	genome.wustl.edu	37	chr4	68358673	68358673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttgccttccttttagacGatattgtgtctggagatagt	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	68358673	68358673	G	A	SNP	CENPC1	ENST00000273853	human	ensembl	69_37n	-1	known	missense	c.2333	p.S778L	0.001	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC1	HGNC	ENSG00000145241	361	0	0	202	51	20.16	-	-	-	A	68358673	G	A	68358673	3	1	275	1	0	0	0	0	1	0	0	0	3258	1059	37	1	518	1	CENPC1	4	68358673	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11093243	68358673	122795603	1413	27100										
STAP1	0	genome.wustl.edu	37	chr4	68447054	68447054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaaacgtgtcactcctacCtgggcaagtaattaaactgc	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	68447054	68447054	C	A	SNP	STAP1	ENST00000265404	human	ensembl	69_37n	1	known	missense	c.395	p.P132H	1.000	NULL	pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	STAP1	HGNC	ENSG00000035720	285	0	0	262	55	17.35	-	-	-	A	68447054	C	A	68447054	3	1	275	1	0	0	0	0	1	0	0	0	15343	681	24	4	413	4	STAP1	4	68447054	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	88381	68447054	122707222	1414	27101										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68777148	68777148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttttgaccacagttatctCcccagcttacaattccaatg	4	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	68777148	68777148	C	T	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	missense	c.1178	p.G393E	1.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	487	0	0	319	87	21.43	-	-	-	T	68777148	C	T	68777148	3	4	275	1	0	0	0	0	1	0	0	0	16334	855	30	2	91	2	TMPRSS11A	4	68777148	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	330094	68777148	122377128	1415	27102										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68784789	68784789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatctggcgtatgtcatccGaaaaggtgactctggaagag	12	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	68784789	68784789	G	A	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	missense	c.863	p.S288L	0.989	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	214	0	0	136	21	13.38	-	-	-	A	68784789	G	A	68784789	3	1	275	1	0	0	0	0	1	0	0	0	16334	1059	37	1	414	1	TMPRSS11A	4	68784789	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7641	68784789	122369487	1416	27103										
TMPRSS11E	0	genome.wustl.edu	37	chr4	69343141	69343141	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagtaacaataaaaccttcGaaaatgaaacggggtctccg	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	69343141	69343141	G	A	SNP	TMPRSS11E	ENST00000305363	human	ensembl	69_37n	1	known	silent	c.762	p.S254	0.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11E	HGNC	ENSG00000087128	387	1	0.26	243	85	25.91	-	-	-	A	69343141	G	A	69343141	2	1	275	1	0	0	0	0	0	0	0	1	16337	1045	37	1		1	TMPRSS11E	4	69343141	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	558352	69343141	121811135	1417	27104										
UGT2B15	0	genome.wustl.edu	37	chr4	69519778	69519778	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtcattaatgactgacttCaatgcattgagcaaatctct	8	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	69519778	69519778	C	A	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	missense	c.1290	p.L430F	0.802	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	362	0	0	211	47	18.22	-	-	-	A	69519778	C	A	69519778	3	1	275	1	0	0	0	0	1	0	0	0	17055	825	29	2	1927	2	UGT2B15	4	69519778	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	176637	69519778	121634498	1418	27105										
UGT2A1	0	genome.wustl.edu	37	chr4	70505195	70505195	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtacagtcacattgtgatttCtttgaatcaactcttctaga	6	8	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	70505195	70505195	C	A	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	missense	c.164	p.R55I	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	421	0	0	176	77	30.43	-	-	-	A	70505195	C	A	70505195	3	1	275	1	0	0	0	0	1	0	0	0	17050	913	32	2		2	UGT2A1	4	70505195	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	985417	70505195	120649081	1419	27106										
UGT2A1	0	genome.wustl.edu	37	chr4	70512677	70512677	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactatagtatgaatcccatGatttccaaagagtttcaaac	5	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	70512677	70512677	G	T	SNP	UGT2A1	ENST00000503640	human	ensembl	69_37n	-1	known	nonsense	c.686	p.S229*	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	82	0	0	42	5	10.64	-	-	-	T	70512677	G	T	70512677	4	4	275	1	0	0	0	0	0	1	0	0	17050	1294	45	2	921	2	UGT2A1	4	70512677	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7482	70512677	120641599	1420	27107										
SULT1E1	0	genome.wustl.edu	37	chr4	70719999	70719999	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaatgagtcttcacaattCtaggagaattcatctcatct	6	9	6	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	70719999	70719999	C	T	SNP	SULT1E1	ENST00000226444	human	ensembl	69_37n	-1	known	missense	c.305	p.R102K	0.096	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1E1	HGNC	ENSG00000109193	228	0	0	179	21	10.5	-	-	-	T	70719999	C	T	70719999	3	4	275	1	0	0	0	0	1	0	0	0	15471	913	32	2	599	2	SULT1E1	4	70719999	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	207322	70719999	120434277	1421	27108										
STATH	0	genome.wustl.edu	37	chr4	70866651	70866651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccataccaaccacaataccaAcaatataccttttaatatca	0	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	70866651	70866651	A	C	SNP	STATH	ENST00000246895	human	ensembl	69_37n	1	known	missense	c.174	p.Q58H	0.000	pfam_Statherin	pfam_Statherin	-	no_errors	STATH	HGNC	ENSG00000126549	468	0	0	218	85	28.05	-	-	-	C	70866651	A	C	70866651	3	2	275	1	0	0	0	0	1	0	0	0	15362	40	2	5	188	5	STATH	4	70866651	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	146652	70866651	120287625	1422	27109										
MUC7	0	genome.wustl.edu	37	chr4	71347457	71347457	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctgcacccacacaccaGactactacttcggtcactac	5	17	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	71347457	71347457	G	T	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	missense	c.996	p.Q332H	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	890	0	0	660	75	10.2	-	-	-	T	71347457	G	T	71347457	3	4	275	1	0	0	0	0	1	0	0	0	10053	933	33	2	1002	2	MUC7	4	71347457	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	480806	71347457	119806819	1423	27110										
ENAM	0	genome.wustl.edu	37	chr4	71500261	71500261	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacataatcaacctcagccCgaagaggaagctcaaccccc	6	16	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	71500261	71500261	C	A	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	silent	c.447	p.P149	0.146	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	453	0	0	210	88	29.43	-	-	-	A	71500261	C	A	71500261	2	1	275	1	0	0	0	0	0	0	0	1	5149	639	23	3		3	ENAM	4	71500261	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	152804	71500261	119654015	1424	27111										
ENAM	0	genome.wustl.edu	37	chr4	71503463	71503463	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaacaaatggcggcatcGaacgtggttttctcctgtgt	10	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	71503463	71503463	G	A	SNP	ENAM	ENST00000472903	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ENAM	HGNC	ENSG00000132464	285	0	0	214	27	11.2	-	-	-	A	71503463	G	A	71503463	1	1	275	0	1	0	0	0	0	0	0	0	5149	1073	37	1		1	ENAM	4	71503463	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3202	71503463	119650813	1425	27112										
SLC4A4	0	genome.wustl.edu	37	chr4	72363368	72363368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacctacacctcttccatgGctctgaaaaaattcaaaact	4	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	72363368	72363368	G	T	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.2125	p.A709S	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	484	0	0	201	34	14.47	-	-	-	T	72363368	G	T	72363368	3	4	275	1	0	0	0	0	1	0	0	0	14745	1203	42	4	2304	4	SLC4A4	4	72363368	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	859905	72363368	118790908	1426	27113										
ADAMTS3	0	genome.wustl.edu	37	chr4	73149340	73149340	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaggactcacaacataacTtgttataacctggtatggag	9	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	73149340	73149340	T	C	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.3131	p.K1044R	1.000	pfscan_PLAC	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	196	0	0	118	24	16.9	-	-	-	C	73149340	T	C	73149340	3	2	275	1	0	0	0	0	1	0	0	0	267	1609	56	5	490	5	ADAMTS3	4	73149340	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	785972	73149340	118004936	1427	27114										
ADAMTS3	0	genome.wustl.edu	37	chr4	73169723	73169723	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccactccacaccaagatCtatgaaggtccgcgacttgg	8	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	73169723	73169723	C	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.2335	p.D779Y	1.000	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	462	0	0	216	28	11.48	-	-	-	A	73169723	C	A	73169723	3	1	275	1	0	0	0	0	1	0	0	0	267	913	32	2	1306	2	ADAMTS3	4	73169723	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20383	73169723	117984553	1428	27115										
ANKRD17	0	genome.wustl.edu	37	chr4	73959889	73959889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatagcattgatattacagCctcctcttccaatcactctg	5	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	73959889	73959889	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.5234	p.G1745D	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	580	0	0	317	96	23.19	-	-	-	T	73959889	C	T	73959889	3	4	275	1	0	0	0	0	1	0	0	0	646	739	26	4	2605	4	ANKRD17	4	73959889	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	790166	73959889	117194387	1429	27116										
AREG	0	genome.wustl.edu	37	chr4	75316115	75316115	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgtcagcaagaatatttCggtgaacggtgtggggaaaa	14	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	75316115	75316115	C	T	SNP	AREG	ENST00000264487	human	ensembl	69_37n	1	known	silent	c.531	p.F177	1.000	pfscan_EG-like_dom	pfscan_EG-like_dom	-	no_errors	AREG	HGNC	ENSG00000109321	79	0	0	45	5	10	-	-	-	T	75316115	C	T	75316115	2	4	275	1	0	0	0	0	0	0	0	1	845	883	31	1		1	AREG	4	75316115	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1356226	75316115	115838161	1430	27117										
PPEF2	0	genome.wustl.edu	37	chr4	76797712	76797712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagggaagagagcggctttCggggagaaaccatgggatgg	19	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	76797712	76797712	C	T	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	missense	c.1048	p.E350K	0.000	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	161	0	0	86	41	32.28	-	-	-	T	76797712	C	T	76797712	3	4	275	1	0	0	0	0	1	0	0	0	12381	893	31	1	1241	1	PPEF2	4	76797712	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1481597	76797712	114356564	1431	27118										
ART3	0	genome.wustl.edu	37	chr4	77003402	77003402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgtggtatatagaacaagCcagggcacttcatttacatt	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	77003402	77003402	C	T	SNP	ART3	ENST00000355810	human	ensembl	69_37n	1	known	silent	c.495	p.S165	0.038	pfam_ART	pfam_ART,prints_ART	-	no_errors	ART3	HGNC	ENSG00000156219	125	0	0	82	28	25.45	-	-	-	T	77003402	C	T	77003402	2	4	275	1	0	0	0	0	0	0	0	1	1002	738	26	4		4	ART3	4	77003402	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	205690	77003402	114150874	1432	27119										
CCDC158	0	genome.wustl.edu	37	chr4	77300511	77300511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaacagtagattccagatCgctgagctgacgcatataca	9	9	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	77300511	77300511	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	missense	c.961	p.D321N	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	432	0	0	286	41	12.54	-	-	-	T	77300511	C	T	77300511	3	4	275	1	0	0	0	0	1	0	0	0	2816	884	31	1	2448	1	CCDC158	4	77300511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	297109	77300511	113853765	1433	27120										
FRAS1	0	genome.wustl.edu	37	chr4	79199824	79199824	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaggatgaagaattaattCacttagatggaaagtgttgt	10	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	79199824	79199824	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.997	p.H333Y	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	430	1	0.23	336	46	12.04	-	-	-	T	79199824	C	T	79199824	3	4	275	1	0	0	0	0	1	0	0	0	6090	826	29	2	1035	2	FRAS1	4	79199824	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1899313	79199824	111954452	1434	27121										
FRAS1	0	genome.wustl.edu	37	chr4	79362418	79362418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattaaactaagtgctctgCccaaatatggctgcattgag	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	79362418	79362418	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.5632	p.P1878S	0.999	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	76	0	0	43	19	30.65	-	-	-	T	79362418	C	T	79362418	3	4	275	1	0	0	0	0	1	0	0	0	6090	739	26	4	5794	4	FRAS1	4	79362418	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	162594	79362418	111791858	1435	27122										
FRAS1	0	genome.wustl.edu	37	chr4	79458239	79458239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagaaagtctatctttgtaCgggcaaggatggttatgtgc	14	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	79458239	79458239	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.11183	p.T3728M	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	336	1	0.29	230	52	18.44	-	-	-	T	79458239	C	T	79458239	3	4	275	1	0	0	0	0	1	0	0	0	6090	536	19	1	11544	1	FRAS1	4	79458239	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	95821	79458239	111696037	1436	27123										
ENOPH1	0	genome.wustl.edu	37	chr4	83378120	83378120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacaaagtagagagtgaaaGttaccgaaagattgcagaca	10	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	83378120	83378120	G	T	SNP	ENOPH1	ENST00000273920	human	ensembl	69_37n	1	known	missense	c.575	p.S192I	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_Enolase_ppase,tigrfam_HAD-SF_hydro_IA_v1	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_Enolase_ppase,tigrfam_HAD-SF_hydro_IA_v1	-	no_errors	ENOPH1	HGNC	ENSG00000145293	253	0	0	218	41	15.83	-	-	-	T	83378120	G	T	83378120	3	4	275	1	0	0	0	0	1	0	0	0	5161	1029	36	4	593	4	ENOPH1	4	83378120	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3919881	83378120	107776156	1437	27124										
SCD5	0	genome.wustl.edu	37	chr4	83601945	83601945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataacatctcgatgcttgcGaacaaacagccacccaatat	5	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	83601945	83601945	G	A	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	missense	c.484	p.R162C	1.000	pfam_Fatty_acid_desaturase-1	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	158	1	0.63	107	14	11.57	-	-	-	A	83601945	G	A	83601945	3	1	275	1	0	0	0	0	1	0	0	0	13974	1058	37	1	726	1	SCD5	4	83601945	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	223825	83601945	107552331	1438	27125										
THAP9	0	genome.wustl.edu	37	chr4	83825903	83825903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatagatttccaactgataCcatacagcgctcaaaatgga	6	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	83825903	83825903	C	T	SNP	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	missense	c.95	p.T32I	0.891	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	73	0	0	44	11	20	-	-	-	T	83825903	C	T	83825903	3	4	275	1	0	0	0	0	1	0	0	0	15946	507	18	4	101	4	THAP9	4	83825903	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	223958	83825903	107328373	1439	27126										
HPSE	0	genome.wustl.edu	37	chr4	84255812	84255812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggctcctgggtgaagaagtCcaggtccacgacgtcctgtg	14	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	84255812	84255812	C	T	SNP	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	missense	c.124	p.D42N	0.263	NULL	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083	173	0	0	94	18	15.93	-	-	-	T	84255812	C	T	84255812	3	4	275	1	0	0	0	0	1	0	0	0	7395	855	30	2	1555	2	HPSE	4	84255812	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	429909	84255812	106898464	1440	27127										
FAM175A	0	genome.wustl.edu	37	chr4	84403385	84403385	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaccttttacttccccaaGaagaaaaccttcctatgaag	4	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	84403385	84403385	G	A	SNP	FAM175A	ENST00000321945	human	ensembl	69_37n	-1	known	missense	c.100	p.L34F	1.000	prints_FAM175	prints_FAM175_BRCA1-A_cplx_Abraxas_su,prints_FAM175,prints_FAM175_BRISC_cplx_Abro1_su	-	no_errors	FAM175A	HGNC	ENSG00000163322	113	0	0	58	24	29.27	-	-	-	A	84403385	G	A	84403385	3	1	275	1	0	0	0	0	1	0	0	0	5537	942	33	2	1161	2	FAM175A	4	84403385	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	147573	84403385	106750891	1441	27128										
PTPN13	0	genome.wustl.edu	37	chr4	87671825	87671825	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattgcaaaacagttcaaaAgagaagaatgacaaagcttc	7	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	87671825	87671825	A	C	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.2853	p.K951N	0.998	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	124	0	0	75	18	19.35	-	-	-	C	87671825	A	C	87671825	3	2	275	1	0	0	0	0	1	0	0	0	12863	69	3	5	2919	5	PTPN13	4	87671825	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3268440	87671825	103482451	1442	27129										
PTPN13	0	genome.wustl.edu	37	chr4	87691078	87691078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagaaagtggaaaaattgAtgtaggagatgttatcttga	12	2	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	87691078	87691078	A	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.4661	p.D1554G	0.990	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	197	0	0	83	43	34.13	-	-	-	G	87691078	A	G	87691078	3	3	275	1	0	0	0	0	1	0	0	0	12863	333	12	5	4771	5	PTPN13	4	87691078	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	19253	87691078	103463198	1443	27130										
PTPN13	0	genome.wustl.edu	37	chr4	87691337	87691337	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggtgtgctaccggaaatTgatactgcgcttttggtgag	13	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	87691337	87691337	T	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.4803	p.I1601M	0.992	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	196	0	0	102	26	20.31	-	-	-	G	87691337	T	G	87691337	3	3	275	1	0	0	0	0	1	0	0	0	12863	1800	63	5	4917	5	PTPN13	4	87691337	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	259	87691337	103462939	1444	27131										
KLHL8	0	genome.wustl.edu	37	chr4	88099661	88099661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacacccacatgtcgccttCgactattcatttctggtcca	5	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88099661	88099661	C	T	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.1064	p.R355Q	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	253	0	0	163	26	13.68	-	-	-	T	88099661	C	T	88099661	3	4	275	1	0	0	0	0	1	0	0	0	8448	884	31	1	822	1	KLHL8	4	88099661	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	408324	88099661	103054615	1445	27132										
SPARCL1	0	genome.wustl.edu	37	chr4	88416158	88416158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgggaatcgtcttctgtgGatactgctgtttctttttca	11	7	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88416158	88416158	G	A	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	missense	c.176	p.S59F	0.000	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	248	0	0	137	29	17.47	-	-	-	A	88416158	G	A	88416158	3	1	275	1	0	0	0	0	1	0	0	0	15087	1174	41	2	1854	2	SPARCL1	4	88416158	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	316497	88416158	102738118	1446	27133										
DSPP	0	genome.wustl.edu	37	chr4	88535003	88535003	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagttgggaaaggcaacGaaggtaaagaggataaagga	15	2	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88535003	88535003	G	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	nonsense	c.1189	p.E397*	0.016	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	226	0	0	123	23	15.75	-	-	-	T	88535003	G	T	88535003	4	4	275	1	0	0	0	0	0	1	0	0	4817	1059	37	3	1203	3	DSPP	4	88535003	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	118845	88535003	102619273	1447	27134										
DMP1	0	genome.wustl.edu	37	chr4	88583798	88583798	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacaacaacacaatggaaGaagtcaagagtgactctaca	8	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88583798	88583798	G	T	SNP	DMP1	ENST00000339673	human	ensembl	69_37n	1	known	nonsense	c.868	p.E290*	0.587	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592	282	0	0	153	34	18.18	-	-	-	T	88583798	G	T	88583798	4	4	275	1	0	0	0	0	0	1	0	0	4619	943	33	2	886	2	DMP1	4	88583798	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48795	88583798	102570478	1448	27135										
IBSP	0	genome.wustl.edu	37	chr4	88723675	88723675	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagatgaaaaatttgcatCgaagagtcaaaatagaggat	9	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88723675	88723675	C	T	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	1	known	nonsense	c.70	p.R24*	0.873	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	141	0	0	84	13	13.27	-	-	-	T	88723675	C	T	88723675	4	4	275	1	0	0	0	0	0	1	0	0	7529	876	31	1	76	1	IBSP	4	88723675	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	139877	88723675	102430601	1449	27136										
MEPE	0	genome.wustl.edu	37	chr4	88766593	88766593	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattatgctaaagcacactcGaaggataaaaagaagcctca	7	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	88766593	88766593	G	A	SNP	MEPE	ENST00000361056	human	ensembl	69_37n	1	known	silent	c.573	p.S191	0.000	pfam_Osteoregulin	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595	87	0	0	81	11	11.96	-	-	-	A	88766593	G	A	88766593	2	1	275	1	0	0	0	0	0	0	0	1	9549	1045	37	1		1	MEPE	4	88766593	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42918	88766593	102387683	1450	27137										
PPM1K	0	genome.wustl.edu	37	chr4	89189480	89189480	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctacaaaaccaccacatttCttgatcctgttaaaagttaa	4	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	89189480	89189480	C	A	SNP	PPM1K	ENST00000295908	human	ensembl	69_37n	-1	known	missense	c.714	p.K238N	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1K	HGNC	ENSG00000163644	190	0	0	139	24	14.72	-	-	-	A	89189480	C	A	89189480	3	1	275	1	0	0	0	0	1	0	0	0	12420	912	32	2	416	2	PPM1K	4	89189480	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	422887	89189480	101964796	1451	27138										
HERC6	0	genome.wustl.edu	37	chr4	89311819	89311819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtagatagccaagtgttttCgtggggaaagaacagccatg	13	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	89311819	89311819	C	T	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.452	p.S151L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	159	0	0	105	22	16.92	-	-	-	T	89311819	C	T	89311819	3	4	275	1	0	0	0	0	1	0	0	0	7113	893	31	1	263	1	HERC6	4	89311819	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122339	89311819	101842457	1452	27139										
HERC6	0	genome.wustl.edu	37	chr4	89345805	89345805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttccatttatctttaattCgctatccaaaattaaattat	1	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	89345805	89345805	C	T	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.1886	p.S629L	0.014	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	233	0	0	113	21	15.56	-	-	-	T	89345805	C	T	89345805	3	4	275	1	0	0	0	0	1	0	0	0	7113	893	31	1	1741	1	HERC6	4	89345805	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33986	89345805	101808471	1453	27140										
HERC3	0	genome.wustl.edu	37	chr4	89627934	89627934	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcagcgatcggattcccatCtacggcatggccagtctgca	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	89627934	89627934	C	A	SNP	HERC3	ENST00000264345	human	ensembl	69_37n	1	known	silent	c.2976	p.I992	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641	182	1	0.55	190	33	14.8	-	-	-	A	89627934	C	A	89627934	2	1	275	1	0	0	0	0	0	0	0	1	7110	903	32	2		2	HERC3	4	89627934	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	282129	89627934	101526342	1454	27141										
FAM13A	0	genome.wustl.edu	37	chr4	89653251	89653251	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccatcagcgtcatcttcGaattggtccagaaagcatcg	8	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	89653251	89653251	G	A	SNP	FAM13A	ENST00000264344	human	ensembl	69_37n	-1	known	silent	c.2745	p.F915	0.814	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	167	0	0	117	15	11.36	-	-	-	A	89653251	G	A	89653251	2	1	275	1	0	0	0	0	0	0	0	1	5492	1049	37	1		1	FAM13A	4	89653251	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25317	89653251	101501025	1455	27142										
TIGD2	0	genome.wustl.edu	37	chr4	90035422	90035422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaatattgatcagtggttcGactctcggagcagtgactca	11	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	90035422	90035422	G	A	SNP	TIGD2	ENST00000317005	human	ensembl	69_37n	1	known	missense	c.1297	p.D433N	0.934	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD2	HGNC	ENSG00000180346	71	0	0	31	11	26.19	-	-	-	A	90035422	G	A	90035422	3	1	275	1	0	0	0	0	1	0	0	0	15991	1058	37	1	1299	1	TIGD2	4	90035422	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	382171	90035422	101118854	1456	27143										
GPRIN3	0	genome.wustl.edu	37	chr4	90171230	90171230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcaatcagggaagttttaGctgatctcagagggtcaggt	13	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	90171230	90171230	G	A	SNP	GPRIN3	ENST00000333209	human	ensembl	69_37n	-1	known	missense	c.32	p.A11V	0.939	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	57	0	0	52	6	10.34	-	-	-	A	90171230	G	A	90171230	3	1	275	1	0	0	0	0	1	0	0	0	6782	971	34	4	2302	4	GPRIN3	4	90171230	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135808	90171230	100983046	1457	27144										
MMRN1	0	genome.wustl.edu	37	chr4	90856553	90856553	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacattcaagaaagcaagatTaacaatctcaccgtctcttt	4	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	90856553	90856553	T	G	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.1722	p.I574M	0.986	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	64	0	0	17	14	45.16	-	-	-	G	90856553	T	G	90856553	3	3	275	1	0	0	0	0	1	0	0	0	9742	1742	61	5	1744	5	MMRN1	4	90856553	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	685323	90856553	100297723	1458	27145										
FAM190A	0	genome.wustl.edu	37	chr4	91844538	91844538	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggaaaagtccggcatttAcagaaggcttttgcttcaag	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	91844538	91844538	A	G	SNP	FAM190A	ENST00000513522	human	ensembl	69_37n	1	known	missense	c.388	p.T130A	0.975	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM190A	HGNC	ENSG00000184305	223	0	0	105	53	33.54	-	-	-	G	91844538	A	G	91844538	3	3	275	1	0	0	0	0	1	0	0	0	5563	388	14	5	2170	5	FAM190A	4	91844538	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	987985	91844538	99309738	1459	27146										
GRID2	0	genome.wustl.edu	37	chr4	94006340	94006340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgactacactctctcagttCgcccacctgtctacttgcat	5	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	94006340	94006340	C	T	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.439	p.R147C	0.997	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	86	0	0	45	9	16.67	-	-	-	T	94006340	C	T	94006340	3	4	275	1	0	0	0	0	1	0	0	0	6823	884	31	1	449	1	GRID2	4	94006340	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2161802	94006340	97147936	1460	27147										
HPGDS	0	genome.wustl.edu	37	chr4	95229803	95229803	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttcacatcttgctttttCtctgcccaaggaaaacatga	5	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	95229803	95229803	C	A	SNP	HPGDS	ENST00000295256	human	ensembl	69_37n	-1	known	missense	c.318	p.E106D	0.999	superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	HPGDS	HGNC	ENSG00000163106	495	0	0	201	74	26.91	-	-	-	A	95229803	C	A	95229803	3	1	275	1	0	0	0	0	1	0	0	0	7386	912	32	2	293	2	HPGDS	4	95229803	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1223463	95229803	95924473	1461	27148										
PDLIM5	0	genome.wustl.edu	37	chr4	95506855	95506855	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caactcagtctcgctctttcCgaatccttgcccagatcact	5	16	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	95506855	95506855	C	T	SNP	PDLIM5	ENST00000317968	human	ensembl	69_37n	1	known	nonsense	c.850	p.R284*	1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110	124	0	0	63	28	30.77	-	-	-	T	95506855	C	T	95506855	4	4	275	1	0	0	0	0	0	1	0	0	11756	644	23	1	930	1	PDLIM5	4	95506855	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	277052	95506855	95647421	1462	27149										
BMPR1B	0	genome.wustl.edu	37	chr4	96075782	96075782	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagccctgcgggttaagaaAacacttgccaaaatgtcaga	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	96075782	96075782	A	C	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	missense	c.1557	p.K519N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	143	0	0	113	21	15.56	-	-	-	C	96075782	A	C	96075782	3	2	275	1	0	0	0	0	1	0	0	0	1475	11	1	5	1505	5	BMPR1B	4	96075782	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	568927	96075782	95078494	1463	27150										
METAP1	0	genome.wustl.edu	37	chr4	99960603	99960603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagatatagaagggatgcGacttgtatgtagggtaagag	15	2	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	99960603	99960603	G	A	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	missense	c.419	p.R140Q	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	444	0	0	213	48	18.32	-	-	-	A	99960603	G	A	99960603	3	1	275	1	0	0	0	0	1	0	0	0	9557	1058	37	1	437	1	METAP1	4	99960603	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3884821	99960603	91193673	1464	27151										
METAP1	0	genome.wustl.edu	37	chr4	99969961	99969961	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatgggttttcagttgttCgaagctattgtgggcatgga	13	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	99969961	99969961	C	T	SNP	METAP1	ENST00000296411	human	ensembl	69_37n	1	known	nonsense	c.865	p.R289*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024	384	0	0	250	41	13.99	-	-	-	T	99969961	C	T	99969961	4	4	275	1	0	0	0	0	0	1	0	0	9557	876	31	1	899	1	METAP1	4	99969961	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9358	99969961	91184315	1465	27152										
ADH6	0	genome.wustl.edu	37	chr4	100129814	100129814	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggtaattttcactccagaGgattacataccagaacgtcc	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	100129814	100129814	G	T	SNP	ADH6	ENST00000504257	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ADH6	HGNC	ENSG00000172955	152	1	0.65	93	34	26.77	-	-	-	T	100129814	G	T	100129814	1	4	275	0	1	0	0	0	0	0	0	0	312	1015	35	4		4	ADH6	4	100129814	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	159853	100129814	91024462	1466	27153										
C4orf17	0	genome.wustl.edu	37	chr4	100434274	100434274	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgacatctgctcttcagatCgagggcaaaggcagccatat	10	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	100434274	100434274	C	T	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	silent	c.36	p.I12	0.000	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	156	0	0	138	57	28.93	-	-	-	T	100434274	C	T	100434274	2	4	275	1	0	0	0	0	0	0	0	1	2273	874	31	1		1	C4orf17	4	100434274	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	304460	100434274	90720002	1467	27154										
MTTP	0	genome.wustl.edu	37	chr4	100521834	100521834	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatcctccaggagaggtttCtctatgcctgtggatttgct	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	100521834	100521834	C	A	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	missense	c.1180	p.L394I	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	218	0	0	130	25	16.03	-	-	-	A	100521834	C	A	100521834	3	1	275	1	0	0	0	0	1	0	0	0	10036	913	32	2	1214	2	MTTP	4	100521834	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	87560	100521834	90632442	1468	27155										
DDIT4L	0	genome.wustl.edu	37	chr4	101108892	101108892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagttttttcttaacaagtCgaaatcctgagctgaggatc	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	101108892	101108892	C	T	SNP	DDIT4L	ENST00000273990	human	ensembl	69_37n	-1	known	missense	c.524	p.R175Q	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358	75	0	0	38	11	22.45	-	-	-	T	101108892	C	T	101108892	3	4	275	1	0	0	0	0	1	0	0	0	4363	884	31	1	61	1	DDIT4L	4	101108892	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	587058	101108892	90045384	1469	27156										
PPP3CA	0	genome.wustl.edu	37	chr4	101947178	101947178	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaagcccttggcttcctcGaagctagtgatcttatgttg	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	101947178	101947178	G	A	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	silent	c.1410	p.F470	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	420	0	0	253	48	15.95	-	-	-	A	101947178	G	A	101947178	2	1	275	1	0	0	0	0	0	0	0	1	12474	1049	37	1		1	PPP3CA	4	101947178	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	838286	101947178	89207098	1470	27157										
PPP3CA	0	genome.wustl.edu	37	chr4	102019578	102019578	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaaaccaccatgcacacaCaggaactgttggttcatcag	8	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	102019578	102019578	C	G	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	silent	c.588	p.L196	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	342	0	0	201	41	16.8	-	-	-	G	102019578	C	G	102019578	2	3	275	1	0	0	0	0	0	0	0	1	12474	465	17	4		4	PPP3CA	4	102019578	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	72400	102019578	89134698	1471	27158										
BANK1	0	genome.wustl.edu	37	chr4	102839149	102839149	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactacttcttatgcttacaGatactcatttcaaagaactt	3	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	102839149	102839149	G	T	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	splice_site	c.1010-1	e7-1	0.848	-	-	-	no_errors	BANK1	HGNC	ENSG00000153064	145	0	0	85	10	10.53	-	-	-	T	102839149	G	T	102839149	5	4	275	1	0	0	0	0	0	0	1	0	1313	956	33	2	1035	2	BANK1	4	102839149	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	819571	102839149	88315127	1472	27159										
UBE2D3	0	genome.wustl.edu	37	chr4	103720655	103720655	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgaacaaatggataaaaGaactgcaagaaaacaaaaac	7	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	103720655	103720655	G	T	SNP	UBE2D3	ENST00000357194	human	ensembl	69_37n	-1	known	missense	c.313	p.L105I	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D3	HGNC	ENSG00000109332	203	0	0	98	16	14.04	-	-	-	T	103720655	G	T	103720655	3	4	275	1	0	0	0	0	1	0	0	0	16947	942	33	2	197	2	UBE2D3	4	103720655	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	881506	103720655	87433621	1473	27160										
CENPE	0	genome.wustl.edu	37	chr4	104074301	104074301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttttctcctgtattaaaGaaaatatcttcctttgttgc	4	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	104074301	104074301	G	T	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.3140	p.S1047Y	0.476	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	419	0	0	426	56	11.57	-	-	-	T	104074301	G	T	104074301	3	4	275	1	0	0	0	0	1	0	0	0	3259	942	33	2	5065	2	CENPE	4	104074301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	353646	104074301	87079975	1474	27161										
CENPE	0	genome.wustl.edu	37	chr4	104096013	104096013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcatagtctaataccagAttatcatagtcagcacgaag	7	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	104096013	104096013	A	C	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.1527	p.N509K	0.807	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	747	0	0	307	80	20.67	-	-	-	C	104096013	A	C	104096013	3	2	275	1	0	0	0	0	1	0	0	0	3259	330	12	5	6714	5	CENPE	4	104096013	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	21712	104096013	87058263	1475	27162										
GSTCD	0	genome.wustl.edu	37	chr4	106640362	106640362	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagcctgttagagtgcataAtgatgataaactccgcaggc	11	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	106640362	106640362	A	C	SNP	GSTCD	ENST00000360505	human	ensembl	69_37n	1	known	missense	c.572	p.N191T	0.991	superfamily_Glutathione-S-Trfase_C-like	pfam_rRNA_ssu_MeTfrase_G,pfam_Small_mtfrase_dom,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GSTCD	HGNC	ENSG00000138780	221	0	0	115	19	14.18	-	-	-	C	106640362	A	C	106640362	3	2	275	1	0	0	0	0	1	0	0	0	6886	101	4	5	578	5	GSTCD	4	106640362	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2544349	106640362	84513914	1476	27163										
NPNT	0	genome.wustl.edu	37	chr4	106819082	106819082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaggcaaatagtgtcatcGattggcctatgtcgttatgg	11	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	106819082	106819082	G	A	SNP	NPNT	ENST00000514837	human	ensembl	69_37n	1	putative	missense	c.25	p.D9N	0.449	NULL	pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_FH2_actin-bd,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPNT	HGNC	ENSG00000168743	276	0	0	152	44	22.45	-	-	-	A	106819082	G	A	106819082	3	1	275	1	0	0	0	0	1	0	0	0	10663	1045	37	1	102	1	NPNT	4	106819082	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	178720	106819082	84335194	1477	27164										
NPNT	0	genome.wustl.edu	37	chr4	106863757	106863757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccagaaaggccaaccaccGgactgacaactatagcacca	7	16	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	106863757	106863757	G	A	SNP	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	missense	c.1057	p.G353R	0.001	NULL	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	468	0	0	260	49	15.86	-	-	-	A	106863757	G	A	106863757	3	1	275	1	0	0	0	0	1	0	0	0	10663	1117	39	1	1236	1	NPNT	4	106863757	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44675	106863757	84290519	1478	27165										
SGMS2	0	genome.wustl.edu	37	chr4	108831624	108831624	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcttctcctggccgctgtCttggcctcctggctgcttca	10	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	108831624	108831624	C	A	SNP	SGMS2	ENST00000359079	human	ensembl	69_37n	1	known	missense	c.1013	p.S338Y	0.993	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGMS2	HGNC	ENSG00000164023	231	0	0	93	36	27.91	-	-	-	A	108831624	C	A	108831624	3	1	275	1	0	0	0	0	1	0	0	0	14303	913	32	2	1031	2	SGMS2	4	108831624	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1967867	108831624	82322652	1479	27166										
COL25A1	0	genome.wustl.edu	37	chr4	109817828	109817828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttacaaaactgtaccttttCgcctgtgtcacccttggggc	8	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	109817828	109817828	C	T	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	missense	c.901	p.E301K	0.970	NULL	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	445	0	0	247	35	12.41	-	-	-	T	109817828	C	T	109817828	3	4	275	1	0	0	0	0	1	0	0	0	3714	893	31	1	1239	1	COL25A1	4	109817828	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	986204	109817828	81336448	1480	27167										
SEC24B	0	genome.wustl.edu	37	chr4	110453844	110453844	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accacagccacctcttcaaaAattgtctgcagagaagctga	7	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	110453844	110453844	A	C	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.3440	p.K1147T	0.470	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	167	0	0	143	22	13.33	-	-	-	C	110453844	A	C	110453844	3	2	275	1	0	0	0	0	1	0	0	0	14083	14	1	5	3522	5	SEC24B	4	110453844	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	636016	110453844	80700432	1481	27168										
LRIT3	0	genome.wustl.edu	37	chr4	110791373	110791373	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatgccgcaatagaaaacCtcagggtggtcagtgagact	11	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	110791373	110791373	C	A	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	missense	c.1333	p.L445I	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	247	0	0	171	52	23.32	-	-	-	A	110791373	C	A	110791373	3	1	275	1	0	0	0	0	1	0	0	0	9015	681	24	4	1343	4	LRIT3	4	110791373	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	337529	110791373	80362903	1482	27169										
C4orf32	0	genome.wustl.edu	37	chr4	113107901	113107901	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccggttggagatgactacaAgaaaatgggaacactttttg	12	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	113107901	113107901	A	C	SNP	C4orf32	ENST00000309733	human	ensembl	69_37n	1	known	missense	c.206	p.K69T	1.000	NULL	NULL	-	no_errors	C4orf32	HGNC	ENSG00000174749	328	0	0	156	59	27.31	-	-	-	C	113107901	A	C	113107901	3	2	275	1	0	0	0	0	1	0	0	0	2283	72	3	5	212	5	C4orf32	4	113107901	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2316528	113107901	78046375	1483	27170										
TIFA	0	genome.wustl.edu	37	chr4	113199408	113199408	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgaaaagtataatgacaGatgttggaatttcggccaaa	9	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	113199408	113199408	G	A	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	silent	c.165	p.I55	0.090	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	174	0	0	48	15	23.81	-	-	-	A	113199408	G	A	113199408	2	1	275	1	0	0	0	0	0	0	0	1	15989	932	33	2		2	TIFA	4	113199408	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	91507	113199408	77954868	1484	27171										
C4orf21	0	genome.wustl.edu	37	chr4	113510823	113510824	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgtaataatctctcaaatINSaaaaaacttcatcttaaatg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	113510823	113510824	-	A	INS	C4orf21	ENST00000309071	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3184_3183	p.I1061fs	0.000:0.000	NULL	pfam_DUF2439	-	no_errors	C4orf21	HGNC	ENSG00000138658	181	0	0	120	29	19.46	-	-	-	A	113510824	-	A	113510823	7	5	275	1	0	1	1	0	0	0	0	0	2275	1421	49	0		0	C4orf21	4	113510823	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	311415	113510823	77643453	1485	27172										
C4orf21	0	genome.wustl.edu	37	chr4	113510941	113510941	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctttcagggacgtctcagaGaattctaccatgaagtcttc	9	10	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	113510941	113510941	G	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.3066	p.F1022L	0.996	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	243	0	0	158	37	18.97	-	-	-	T	113510941	G	T	113510941	3	4	275	1	0	0	0	0	1	0	0	0	2275	933	33	2	3320	2	C4orf21	4	113510941	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	118	113510941	77643335	1486	27173										
ANK2	0	genome.wustl.edu	37	chr4	114277368	114277368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcgctcatggagagctcaGggaagagccccctttctcct	10	14	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	114277368	114277368	G	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.7594	p.G2532W	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	127	0	0	99	13	11.61	-	-	-	T	114277368	G	T	114277368	3	4	275	1	0	0	0	0	1	0	0	0	621	1000	35	4	7809	4	ANK2	4	114277368	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	766427	114277368	76876908	1487	27174										
ANK2	0	genome.wustl.edu	37	chr4	114277951	114277951	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcaagatgaatgaagataCtcaggaagagccaggcaaat	10	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	114277951	114277951	C	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.8177	p.T2726N	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	163	0	0	107	26	19.55	-	-	-	A	114277951	C	A	114277951	3	1	275	1	0	0	0	0	1	0	0	0	621	565	20	4	8392	4	ANK2	4	114277951	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	583	114277951	76876325	1488	27175										
ANK2	0	genome.wustl.edu	37	chr4	114290938	114290938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgagacctgtgaaagactcGatgaagatgcagcttttgaa	11	7	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	114290938	114290938	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.11587	p.D3863N	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	181	0	0	119	34	22.08	-	-	-	A	114290938	G	A	114290938	3	1	275	1	0	0	0	0	1	0	0	0	621	1058	37	1	11822	1	ANK2	4	114290938	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12987	114290938	76863338	1489	27176										
ARSJ	0	genome.wustl.edu	37	chr4	114823848	114823848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacccagtcgctgtagccaGgatttcctgtaagcaatttc	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	114823848	114823848	G	A	SNP	ARSJ	ENST00000315366	human	ensembl	69_37n	-1	known	missense	c.1382	p.P461L	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801	193	0	0	78	28	26.17	-	-	-	A	114823848	G	A	114823848	3	1	275	1	0	0	0	0	1	0	0	0	999	1000	35	4	421	4	ARSJ	4	114823848	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	532910	114823848	76330428	1490	27177										
ARSJ	0	genome.wustl.edu	37	chr4	114824661	114824661	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaggtatcaaatcctcttCtggtgggcatgcattctttt	8	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	114824661	114824661	C	A	SNP	ARSJ	ENST00000315366	human	ensembl	69_37n	-1	known	missense	c.569	p.R190I	0.942	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801	246	0	0	146	34	18.89	-	-	-	A	114824661	C	A	114824661	3	1	275	1	0	0	0	0	1	0	0	0	999	913	32	2	1234	2	ARSJ	4	114824661	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	813	114824661	76329615	1491	27178										
UGT8	0	genome.wustl.edu	37	chr4	115544340	115544340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggagattgacagcaatcGaactgtttgacatactggat	11	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	115544340	115544340	G	A	SNP	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	162	0	0	117	27	18.62	-	-	-	A	115544340	G	A	115544340	3	1	275	1	0	0	0	0	1	0	0	0	17062	1059	37	1	306	1	UGT8	4	115544340	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	719679	115544340	75609936	1492	27179										
UGT8	0	genome.wustl.edu	37	chr4	115597146	115597146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggtcaccctgtcaatcGaactatctattggatagatt	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	115597146	115597146	G	A	SNP	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	missense	c.1328	p.R443Q	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	194	0	0	116	22	15.83	-	-	-	A	115597146	G	A	115597146	3	1	275	1	0	0	0	0	1	0	0	0	17062	1058	37	1	1346	1	UGT8	4	115597146	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	52806	115597146	75557130	1493	27180										
SEC24D	0	genome.wustl.edu	37	chr4	119661913	119661913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggcagccatttctacatCggtggtgttgttcatcaaga	11	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	119661913	119661913	C	T	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.2146	p.D716N	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	270	0	0	129	26	16.77	-	-	-	T	119661913	C	T	119661913	3	4	275	1	0	0	0	0	1	0	0	0	14085	884	31	1	983	1	SEC24D	4	119661913	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4064767	119661913	71492363	1494	27181										
SYNPO2	0	genome.wustl.edu	37	chr4	119951918	119951918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagccagccttttacgattCgtctgagcgaatagcttccc	8	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	119951918	119951918	C	T	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.1988	p.S663L	0.005	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	224	0	0	191	36	15.86	-	-	-	T	119951918	C	T	119951918	3	4	275	1	0	0	0	0	1	0	0	0	15549	893	31	1	2002	1	SYNPO2	4	119951918	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	290005	119951918	71202358	1495	27182										
USP53	0	genome.wustl.edu	37	chr4	120192984	120192984	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggaagcagaagttcccttGaatctaatggaaaaggagca	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	120192984	120192984	G	T	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	nonsense	c.1969	p.E657*	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	154	0	0	92	18	16.36	-	-	-	T	120192984	G	T	120192984	4	4	275	1	0	0	0	0	0	1	0	0	17181	1291	45	2	2015	2	USP53	4	120192984	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	241066	120192984	70961292	1496	27183										
PDE5A	0	genome.wustl.edu	37	chr4	120463721	120463721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagcttccagaaactgttCgtcatttcggttgaaaggct	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	120463721	120463721	C	T	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	missense	c.1465	p.E489K	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	529	0	0	335	60	15.19	-	-	-	T	120463721	C	T	120463721	3	4	275	1	0	0	0	0	1	0	0	0	11717	893	31	1	1210	1	PDE5A	4	120463721	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	270737	120463721	70690555	1497	27184										
PDE5A	0	genome.wustl.edu	37	chr4	120484077	120484077	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattttcttcaaaattacttCtaatgattgttgttcttcaa	3	6	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	120484077	120484077	C	A	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	nonsense	c.1042	p.E348*	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	122	0	0	57	11	16.18	-	-	-	A	120484077	C	A	120484077	4	1	275	1	0	0	0	0	0	1	0	0	11717	922	32	2	1649	2	PDE5A	4	120484077	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20356	120484077	70670199	1498	27185										
TNIP3	0	genome.wustl.edu	37	chr4	122085252	122085252	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactttctgcggcaatcattCtagatgtgccctgtacaaaa	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	122085252	122085252	C	A	SNP	TNIP3	ENST00000057513	human	ensembl	69_37n	-1	known	missense	c.29	p.R10I	0.221	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	287	0	0	237	36	13.19	-	-	-	A	122085252	C	A	122085252	3	1	275	1	0	0	0	0	1	0	0	0	16411	913	32	2	992	2	TNIP3	4	122085252	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1601175	122085252	69069024	1499	27186										
EXOSC9	0	genome.wustl.edu	37	chr4	122732758	122732758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttctgagatgcagtaaaatCgctggtgtgaaagtagcaga	13	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	122732758	122732758	C	T	SNP	EXOSC9	ENST00000511132	human	ensembl	69_37n	1	putative	missense	c.265	p.R89C	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EXOSC9	HGNC	ENSG00000123737	192	0	0	116	24	17.14	-	-	-	T	122732758	C	T	122732758	3	4	275	1	0	0	0	0	1	0	0	0	5358	874	31	1	789	1	EXOSC9	4	122732758	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	647506	122732758	68421518	1500	27187										
CCNA2	0	genome.wustl.edu	37	chr4	122742137	122742137	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcagagaacctttacctcCatttccctaaggtatgtgtg	7	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	122742137	122742137	C	A	SNP	CCNA2	ENST00000274026	human	ensembl	69_37n	-1	known	missense	c.567	p.M189I	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA2	HGNC	ENSG00000145386	181	0	0	92	19	17.12	-	-	-	A	122742137	C	A	122742137	3	1	275	1	0	0	0	0	1	0	0	0	2939	594	21	4	755	4	CCNA2	4	122742137	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9379	122742137	68412139	1501	27188										
KIAA1109	0	genome.wustl.edu	37	chr4	123141534	123141534	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctacagctttcttggaaaGactatgttttgaaatgaaaa	7	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	123141534	123141534	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.2522	p.R841I	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	323	1	0.31	161	31	16.15	-	-	-	T	123141534	G	T	123141534	3	4	275	1	0	0	0	0	1	0	0	0	8260	942	33	2	2600	2	KIAA1109	4	123141534	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	399397	123141534	68012742	1502	27189										
KIAA1109	0	genome.wustl.edu	37	chr4	123170670	123170670	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgcaatcactgctattcCttttgagaagtccaaagttt	7	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	123170670	123170670	C	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.5543	p.P1848H	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	236	0	0	195	31	13.72	-	-	-	A	123170670	C	A	123170670	3	1	275	1	0	0	0	0	1	0	0	0	8260	681	24	4	5677	4	KIAA1109	4	123170670	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29136	123170670	67983606	1503	27190										
KIAA1109	0	genome.wustl.edu	37	chr4	123229163	123229163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actggaatgaacaacgaatgGctttacataaggatattcat	8	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	123229163	123229163	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.9901	p.A3301T	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	274	0	0	121	20	14.08	-	-	-	A	123229163	G	A	123229163	3	1	275	1	0	0	0	0	1	0	0	0	8260	1203	42	4	10123	4	KIAA1109	4	123229163	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58493	123229163	67925113	1504	27191										
ADAD1	0	genome.wustl.edu	37	chr4	123333851	123333851	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctaaagatggtgttaataGaataagcagtatgtcctcaa	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	123333851	123333851	G	T	SNP	ADAD1	ENST00000296513	human	ensembl	69_37n	1	known	missense	c.1136	p.R379I	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	364	0	0	249	36	12.63	-	-	-	T	123333851	G	T	123333851	3	4	275	1	0	0	0	0	1	0	0	0	231	942	33	2	1166	2	ADAD1	4	123333851	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	104688	123333851	67820425	1505	27192										
SPATA5	0	genome.wustl.edu	37	chr4	123855738	123855738	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatttcttcaacaacaaGagtcaattttacagagattg	5	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	123855738	123855738	G	T	SNP	SPATA5	ENST00000274008	human	ensembl	69_37n	1	known	missense	c.992	p.R331I	0.662	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375	52	0	0	53	12	18.46	-	-	-	T	123855738	G	T	123855738	3	4	275	1	0	0	0	0	1	0	0	0	15102	942	33	2	1010	2	SPATA5	4	123855738	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	521887	123855738	67298538	1506	27193										
SPRY1	0	genome.wustl.edu	37	chr4	124322751	124322751	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgagatcactacacatggAtccccaaaatcaacatggca	6	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	124322751	124322751	A	G	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	missense	c.5	p.D2G	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	221	0	0	121	14	10.37	-	-	-	G	124322751	A	G	124322751	3	3	275	1	0	0	0	0	1	0	0	0	15196	333	12	5	7	5	SPRY1	4	124322751	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	467013	124322751	66831525	1507	27194										
SPRY1	0	genome.wustl.edu	37	chr4	124323317	124323317	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggaagtgcaagtgtggaGaatgcactgctcccaggacc	15	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	124323317	124323317	G	T	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	nonsense	c.571	p.E191*	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	217	0	0	98	46	31.94	-	-	-	T	124323317	G	T	124323317	4	4	275	1	0	0	0	0	0	1	0	0	15196	943	33	2	573	2	SPRY1	4	124323317	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	566	124323317	66830959	1508	27195										
FAT4	0	genome.wustl.edu	37	chr4	126238290	126238290	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtaaacgtgactgtgcaaGacattaatgacaaccccccg	9	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	126238290	126238290	G	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.724	p.D242N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	46	0	0	9	4	28.57	-	-	-	A	126238290	G	A	126238290	3	1	275	1	0	0	0	0	1	0	0	0	5738	942	33	2	726	2	FAT4	4	126238290	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1914973	126238290	64915986	1509	27196										
FAT4	0	genome.wustl.edu	37	chr4	126238998	126238998	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcctcctgtcttttcacagCaagtgtacagagtgaacctg	8	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	126238998	126238998	C	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.1432	p.Q478K	0.991	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	48	0	0	26	4	13.33	-	-	-	A	126238998	C	A	126238998	3	1	275	1	0	0	0	0	1	0	0	0	5738	711	25	4	1434	4	FAT4	4	126238998	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	708	126238998	64915278	1510	27197										
FAT4	0	genome.wustl.edu	37	chr4	126328170	126328170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaatattcactgctagttCgtgctgatgatggtcttcag	9	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	126328170	126328170	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.5443	p.R1815C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	119	0	0	46	21	31.34	-	-	-	T	126328170	C	T	126328170	3	4	275	1	0	0	0	0	1	0	0	0	5738	884	31	1	5453	1	FAT4	4	126328170	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	89172	126328170	64826106	1511	27198										
SLC25A31	0	genome.wustl.edu	37	chr4	128689927	128689927	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtttattaccaaagccaaaGaaaactccatttcttgtctc	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	128689927	128689927	G	T	SNP	SLC25A31	ENST00000281154	human	ensembl	69_37n	1	known	missense	c.654	p.K218N	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,prints_Aden_trnslctor,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A31	HGNC	ENSG00000151475	298	0	0	186	26	12.26	-	-	-	T	128689927	G	T	128689927	3	4	275	1	0	0	0	0	1	0	0	0	14584	933	33	2	672	2	SLC25A31	4	128689927	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2361757	128689927	62464349	1512	27199										
HSPA4L	0	genome.wustl.edu	37	chr4	128726847	128726847	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatcttattttcagtgtgcGattctctcaccagcatttaa	5	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	128726847	128726847	G	A	SNP	HSPA4L	ENST00000439123	human	ensembl	69_37n	1	known	silent	c.1236	p.A412	0.985	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070	175	0	0	109	48	30.57	-	-	-	A	128726847	G	A	128726847	2	1	275	1	0	0	0	0	0	0	0	1	7466	1045	37	1		1	HSPA4L	4	128726847	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36920	128726847	62427429	1513	27200										
MFSD8	0	genome.wustl.edu	37	chr4	128854175	128854175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagataaatagagtcacaaaAaacagaacattgatggccac	7	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	128854175	128854175	A	C	SNP	MFSD8	ENST00000296468	human	ensembl	69_37n	-1	known	missense	c.828	p.F276L	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073	416	0	0	179	81	31.15	-	-	-	C	128854175	A	C	128854175	3	2	275	1	0	0	0	0	1	0	0	0	9609	11	1	5	748	5	MFSD8	4	128854175	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	127328	128854175	62300101	1514	27201										
C4orf29	0	genome.wustl.edu	37	chr4	128951736	128951736	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atattccacgaacaggagttCgaagtttacaagaaatttgg	9	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	128951736	128951736	C	T	SNP	C4orf29	ENST00000398965	human	ensembl	69_37n	1	known	nonsense	c.1150	p.R384*	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074	186	0	0	145	57	28.22	-	-	-	T	128951736	C	T	128951736	4	4	275	1	0	0	0	0	0	1	0	0	2280	876	31	1	1188	1	C4orf29	4	128951736	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97561	128951736	62202540	1515	27202										
LARP1B	0	genome.wustl.edu	37	chr4	129121815	129121815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggaagatgcaaaagaaaaTtacaggtcagatattttctt	9	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	129121815	129121815	T	G	SNP	LARP1B	ENST00000326639	human	ensembl	69_37n	1	known	missense	c.2304	p.N768K	1.000	smart_DM15	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709	157	0	0	107	13	10.83	-	-	-	G	129121815	T	G	129121815	3	3	275	1	0	0	0	0	1	0	0	0	8683	1490	52	5	2496	5	LARP1B	4	129121815	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	170079	129121815	62032461	1516	27203										
PHF17	0	genome.wustl.edu	37	chr4	129764183	129764183	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccagacatgaagatcgaaAgccttcagaggtacttcttg	9	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	129764183	129764183	A	C	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	missense	c.128	p.K43T	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	217	0	0	126	26	17.11	-	-	-	C	129764183	A	C	129764183	3	2	275	1	0	0	0	0	1	0	0	0	11902	72	3	5	134	5	PHF17	4	129764183	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	642368	129764183	61390093	1517	27204										
SCLT1	0	genome.wustl.edu	37	chr4	129913344	129913344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttttttcggagttgttCgattatcacactttgttcag	8	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	129913344	129913344	C	T	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.664	p.E222K	0.975	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	290	0	0	165	20	10.81	-	-	-	T	129913344	C	T	129913344	3	4	275	1	0	0	0	0	1	0	0	0	13994	893	31	1	1454	1	SCLT1	4	129913344	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	149161	129913344	61240932	1518	27205										
PCDH10	0	genome.wustl.edu	37	chr4	134071544	134071544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaaatagaccgcgaacaAatctgcaaacagagcccctc	8	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	134071544	134071544	A	C	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.249	p.Q83H	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	68	0	0	42	6	12.5	-	-	-	C	134071544	A	C	134071544	3	2	275	1	0	0	0	0	1	0	0	0	11580	11	1	5	251	5	PCDH10	4	134071544	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	4158200	134071544	57082732	1519	27206										
PCDH18	0	genome.wustl.edu	37	chr4	138451969	138451969	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatactcagatctcttttctCtatccagtgtggcattagtt	6	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	138451969	138451969	C	A	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1274	p.R425I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	242	0	0	109	34	23.78	-	-	-	A	138451969	C	A	138451969	3	1	275	1	0	0	0	0	1	0	0	0	11586	913	32	2	2149	2	PCDH18	4	138451969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4380425	138451969	52702307	1520	27207										
SLC7A11	0	genome.wustl.edu	37	chr4	139100403	139100403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaccacctgggtttcttgTcccatataataaagagataa	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	139100403	139100403	T	C	SNP	SLC7A11	ENST00000280612	human	ensembl	69_37n	-1	known	missense	c.1412	p.D471G	1.000	pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012	162	0	0	87	13	12.87	-	-	-	C	139100403	T	C	139100403	3	2	275	1	0	0	0	0	1	0	0	0	14783	1667	58	5	101	5	SLC7A11	4	139100403	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	648434	139100403	52053873	1521	27208										
NAA15	0	genome.wustl.edu	37	chr4	140258070	140258070	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagcttatgaattggttCgtagaggtttgagaaatgac	12	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	140258070	140258070	C	T	SNP	NAA15	ENST00000296543	human	ensembl	69_37n	1	known	missense	c.208	p.R70C	1.000	smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134	382	1	0.26	223	93	29.34	-	-	-	T	140258070	C	T	140258070	3	4	275	1	0	0	0	0	1	0	0	0	10190	884	31	1	218	1	NAA15	4	140258070	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1157667	140258070	50896206	1522	27209										
SETD7	0	genome.wustl.edu	37	chr4	140468192	140468192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgtgcggtaatccgtcatCgtccaggtgccctggagaaa	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	140468192	140468192	C	T	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	missense	c.52	p.D18N	1.000	pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	226	0	0	140	49	25.93	-	-	-	T	140468192	C	T	140468192	3	4	275	1	0	0	0	0	1	0	0	0	14224	884	31	1	1076	1	SETD7	4	140468192	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	210122	140468192	50686084	1523	27210										
CLGN	0	genome.wustl.edu	37	chr4	141315154	141315154	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaatggatgatcatcttcGaaataatctggattaggaat	9	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	141315154	141315154	G	A	SNP	CLGN	ENST00000325617	human	ensembl	69_37n	-1	known	silent	c.1191	p.F397	1.000	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132	176	0	0	82	16	16.16	-	-	-	A	141315154	G	A	141315154	2	1	275	1	0	0	0	0	0	0	0	1	3554	1049	37	1		1	CLGN	4	141315154	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	846962	141315154	49839122	1524	27211										
TBC1D9	0	genome.wustl.edu	37	chr4	141600789	141600789	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcccttcccataagaaaaGaataaaagcaaaggtggtta	7	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	141600789	141600789	G	T	SNP	TBC1D9	ENST00000442267	human	ensembl	69_37n	-1	known	missense	c.569	p.S190Y	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436	149	0	0	69	30	30.3	-	-	-	T	141600789	G	T	141600789	3	4	275	1	0	0	0	0	1	0	0	0	15722	942	33	2	3303	2	TBC1D9	4	141600789	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	285635	141600789	49553487	1525	27212										
ZNF330	0	genome.wustl.edu	37	chr4	142155135	142155135	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctcactatgaggaacaaGagaactaggggagctgctct	12	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	142155135	142155135	G	T	SNP	ZNF330	ENST00000262990	human	ensembl	69_37n	1	known	nonsense	c.955	p.E319*	0.988	NULL	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445	158	0	0	103	17	14.17	-	-	-	T	142155135	G	T	142155135	4	4	275	1	0	0	0	0	0	1	0	0	17944	943	33	2	989	2	ZNF330	4	142155135	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	554346	142155135	48999141	1526	27213										
INPP4B	0	genome.wustl.edu	37	chr4	143235911	143235911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttctggtaggacactggttCgaacctgtggagaaaaacat	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	143235911	143235911	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.377	p.R126Q	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	407	0	0	263	47	15.16	-	-	-	T	143235911	C	T	143235911	3	4	275	1	0	0	0	0	1	0	0	0	7807	884	31	1	2473	1	INPP4B	4	143235911	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1080776	143235911	47918365	1527	27214										
GAB1	0	genome.wustl.edu	37	chr4	144390327	144390327	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagaatcagaaacgccagcGaagagtgtgaaatgaaaata	10	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	144390327	144390327	G	A	SNP	GAB1	ENST00000262995	human	ensembl	69_37n	1	known	silent	c.2160	p.A720	0.994	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458	367	0	0	193	27	12.27	-	-	-	A	144390327	G	A	144390327	2	1	275	1	0	0	0	0	0	0	0	1	6197	1045	37	1		1	GAB1	4	144390327	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1154416	144390327	46763949	1528	27215										
SMARCA5	0	genome.wustl.edu	37	chr4	144446671	144446671	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctcatttctttgtatgaGaatggcatcaatggtatcct	9	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	144446671	144446671	G	A	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	silent	c.588	p.E196	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	708	0	0	423	84	16.57	-	-	-	A	144446671	G	A	144446671	2	1	275	1	0	0	0	0	0	0	0	1	14860	933	33	2		2	SMARCA5	4	144446671	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	56344	144446671	46707605	1529	27216										
SMARCA5	0	genome.wustl.edu	37	chr4	144465058	144465058	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcgaaagttcacttagaaActttacaatggatacagagt	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	144465058	144465058	A	C	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	missense	c.2105	p.N702T	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	285	1	0.35	166	51	23.5	-	-	-	C	144465058	A	C	144465058	3	2	275	1	0	0	0	0	1	0	0	0	14860	43	2	5	2167	5	SMARCA5	4	144465058	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	18387	144465058	46689218	1530	27217										
OTUD4	0	genome.wustl.edu	37	chr4	146059425	146059425	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggctgggggaacatattCttgccacttagtgactcttc	11	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	146059425	146059425	C	A	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.2502	p.K834N	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	114	0	0	81	11	11.96	-	-	-	A	146059425	C	A	146059425	3	1	275	1	0	0	0	0	1	0	0	0	11387	912	32	2	846	2	OTUD4	4	146059425	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1594367	146059425	45094851	1531	27218										
ZNF827	0	genome.wustl.edu	37	chr4	146770595	146770595	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttcggttttctctcgcccGattaaagtgctgtagccaac	10	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	146770595	146770595	G	A	SNP	ZNF827	ENST00000508784	human	ensembl	69_37n	-1	known	silent	c.2100	p.I700	0.800	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612	348	0	0	210	103	32.7	-	-	-	A	146770595	G	A	146770595	2	1	275	1	0	0	0	0	0	0	0	1	18273	1048	37	1		1	ZNF827	4	146770595	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	711170	146770595	44383681	1532	27219										
POU4F2	0	genome.wustl.edu	37	chr4	147561059	147561059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgagagtctgctggcccGcgccgaggctctggcagccg	17	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	147561059	147561059	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.329	p.R110H	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	530	0	0	219	35	13.62	-	-	-	A	147561059	G	A	147561059	3	1	275	1	0	0	0	0	1	0	0	0	12352	1087	38	1	335	1	POU4F2	4	147561059	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	790464	147561059	43593217	1533	27220										
POU4F2	0	genome.wustl.edu	37	chr4	147561724	147561724	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggccgagaagtcccaccgcGagaagctcaccaagcctgaa	11	14	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	147561724	147561724	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.994	p.E332K	1.000	superfamily_Homeodomain-like	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	86	0	0	46	7	13.21	-	-	-	A	147561724	G	A	147561724	3	1	275	1	0	0	0	0	1	0	0	0	12352	1059	37	1	1000	1	POU4F2	4	147561724	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	665	147561724	43592552	1534	27221										
NR3C2	0	genome.wustl.edu	37	chr4	149115952	149115952	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtctgcaagcaggacaattCtttcgtcgaatcttatcaat	7	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	149115952	149115952	C	A	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.1971	p.K657N	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	427	0	0	227	46	16.85	-	-	-	A	149115952	C	A	149115952	3	1	275	1	0	0	0	0	1	0	0	0	10704	912	32	2	1019	2	NR3C2	4	149115952	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1554228	149115952	42038324	1535	27222										
LRBA	0	genome.wustl.edu	37	chr4	151356802	151356802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaattgatgaaaaagttCgatctgcatgatcaaatttg	9	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	151356802	151356802	C	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.7013	p.R2338Q	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	142	0	0	83	10	10.75	-	-	-	T	151356802	C	T	151356802	3	4	275	1	0	0	0	0	1	0	0	0	8997	884	31	1	1626	1	LRBA	4	151356802	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2240850	151356802	39797474	1536	27223										
MAB21L2	0	genome.wustl.edu	37	chr4	151504852	151504852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgaccggcaagcagagctCggcagagagcgacgcctggg	17	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	151504852	151504852	C	T	SNP	MAB21L2	ENST00000317605	human	ensembl	69_37n	1	known	missense	c.671	p.S224L	1.000	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541	38	0	0	13	7	33.33	-	-	-	T	151504852	C	T	151504852	3	4	275	1	0	0	0	0	1	0	0	0	9209	893	31	1	673	1	MAB21L2	4	151504852	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148050	151504852	39649424	1537	27224										
SH3D19	0	genome.wustl.edu	37	chr4	152095845	152095845	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaccatctctgaaccaacaGattcttcagccaggttcccc	6	15	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	152095845	152095845	G	T	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.671	p.S224Y	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	117	0	0	54	27	33.33	-	-	-	T	152095845	G	T	152095845	3	4	275	1	0	0	0	0	1	0	0	0	14337	942	33	2	1761	2	SH3D19	4	152095845	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	590993	152095845	39058431	1538	27225										
FBXW7	0	genome.wustl.edu	37	chr4	153332699	153332699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggagtcctcatctaccGaaataaatctattattgttt	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	153332699	153332699	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.257	p.S86L	0.998	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	1351	2	0.15	726	171	18.96	-	-	-	A	153332699	G	A	153332699	3	1	275	1	0	0	0	0	1	0	0	0	5815	1059	37	1	2326	1	FBXW7	4	153332699	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1236854	153332699	37821577	1539	27226										
ARFIP1	0	genome.wustl.edu	37	chr4	153750861	153750861	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaagttgatgactctcgtGaacatagctttaatagggta	11	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	153750861	153750861	G	A	SNP	ARFIP1	ENST00000353617	human	ensembl	69_37n	1	known	missense	c.76	p.E26K	1.000	NULL	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP1	HGNC	ENSG00000164144	568	0	0	420	68	13.91	-	-	-	A	153750861	G	A	153750861	3	1	275	1	0	0	0	0	1	0	0	0	856	1291	45	2	78	2	ARFIP1	4	153750861	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	418162	153750861	37403415	1540	27227										
FHDC1	0	genome.wustl.edu	37	chr4	153893678	153893678	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagatttctgtaccaaattCaacaaagcagttaaggtaca	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	153893678	153893678	C	A	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	missense	c.1368	p.F456L	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	113	0	0	43	25	36.76	-	-	-	A	153893678	C	A	153893678	3	1	275	1	0	0	0	0	1	0	0	0	5922	825	29	2	1406	2	FHDC1	4	153893678	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	142817	153893678	37260598	1541	27228										
DCHS2	0	genome.wustl.edu	37	chr4	155242040	155242040	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaagatggggaatggtcaTtctgatcttccacatcgata	11	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	155242040	155242040	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3146	p.N1049S	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	522	0	0	351	131	27.12	-	-	-	C	155242040	T	C	155242040	3	2	275	1	0	0	0	0	1	0	0	0	4319	1493	52	5	5652	5	DCHS2	4	155242040	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1348362	155242040	35912236	1542	27229										
FGG	0	genome.wustl.edu	37	chr4	155526112	155526112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgagtctgttgaatgggatTatcttcatagtggttttctt	11	4	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	155526112	155526112	T	C	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	missense	c.1236	p.I412M	0.929	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	528	0	0	363	53	12.74	-	-	-	C	155526112	T	C	155526112	3	2	275	1	0	0	0	0	1	0	0	0	5916	1744	61	5	148	5	FGG	4	155526112	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	284072	155526112	35628164	1543	27230										
RBM46	0	genome.wustl.edu	37	chr4	155717951	155717951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatggatgcagtaaagttcGaactggtattcagaatgaag	11	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	155717951	155717951	G	A	SNP	RBM46	ENST00000281722	human	ensembl	69_37n	1	known	missense	c.47	p.R16Q	0.997	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962	269	0	0	180	27	13.04	-	-	-	A	155717951	G	A	155717951	3	1	275	1	0	0	0	0	1	0	0	0	13223	1058	37	1	49	1	RBM46	4	155717951	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	191839	155717951	35436325	1544	27231										
MAP9	0	genome.wustl.edu	37	chr4	156274379	156274379	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttcttcagttttcttCttgtttttttcttcaagcct	3	9	7	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	156274379	156274379	C	A	SNP	MAP9	ENST00000311277	human	ensembl	69_37n	-1	known	missense	c.1494	p.K498N	0.954	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	499	0	0	192	75	28.09	-	-	-	A	156274379	C	A	156274379	3	1	275	1	0	0	0	0	1	0	0	0	9341	912	32	2	465	2	MAP9	4	156274379	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	556428	156274379	34879897	1545	27232										
GRIA2	0	genome.wustl.edu	37	chr4	158284072	158284072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacaagtcaagggccgaggCgaaacgaatgaaggtggcaa	14	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	158284072	158284072	C	T	SNP	GRIA2	ENST00000264426	human	ensembl	69_37n	1	known	missense	c.2528	p.A843V	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	376	0	0	246	38	13.38	-	-	-	T	158284072	C	T	158284072	3	4	275	1	0	0	0	0	1	0	0	0	6819	768	27	1	2705	1	GRIA2	4	158284072	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2009693	158284072	32870204	1546	27233										
FAM198B	0	genome.wustl.edu	37	chr4	159091526	159091526	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgtgaaccgtgggtggaGaaaaatcatttagaaaaaga	11	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	159091526	159091526	G	A	SNP	FAM198B	ENST00000593260	human	ensembl	69_37n	-1	novel	missense	c.5	p.S2F	0.982	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM198B	HGNC	ENSG00000164125	97	0	0	43	18	29.51	-	-	-	A	159091526	G	A	159091526	3	1	275	1	0	0	0	0	1	0	0	0	5571	957	33	2		2	FAM198B	4	159091526	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	807454	159091526	32062750	1547	27234										
RXFP1	0	genome.wustl.edu	37	chr4	159573001	159573001	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccacaagaccatttaaaGaaatgattcatcggttttgg	8	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	159573001	159573001	G	T	SNP	RXFP1	ENST00000307765	human	ensembl	69_37n	1	known	nonsense	c.2068	p.E690*	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP1	HGNC	ENSG00000171509	129	0	0	89	11	11	-	-	-	T	159573001	G	T	159573001	4	4	275	1	0	0	0	0	0	1	0	0	13845	943	33	2	2138	2	RXFP1	4	159573001	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	481475	159573001	31581275	1548	27235										
RAPGEF2	0	genome.wustl.edu	37	chr4	160243587	160243587	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgtgctgtgatggtgttCgcagtggtggaaagagcagg	17	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	160243587	160243587	C	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	silent	c.459	p.F153	0.994	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	284	0	0	131	85	39.35	-	-	-	T	160243587	C	T	160243587	2	4	275	1	0	0	0	0	0	0	0	1	13127	883	31	1		1	RAPGEF2	4	160243587	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	670586	160243587	30910689	1549	27236										
RAPGEF2	0	genome.wustl.edu	37	chr4	160271394	160271394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaatatcaaatgcatcttCgcagctttcttctcctccta	3	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	160271394	160271394	C	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	missense	c.3335	p.S1112L	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	143	0	0	103	15	12.71	-	-	-	T	160271394	C	T	160271394	3	4	275	1	0	0	0	0	1	0	0	0	13127	893	31	1	3413	1	RAPGEF2	4	160271394	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27807	160271394	30882882	1550	27237										
RAPGEF2	0	genome.wustl.edu	37	chr4	160271430	160271430	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctacttctccacagagttCtccaaggaaaggtagaatta	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	160271430	160271430	C	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	missense	c.3371	p.S1124Y	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	94	0	0	74	14	15.91	-	-	-	A	160271430	C	A	160271430	3	1	275	1	0	0	0	0	1	0	0	0	13127	913	32	2	3449	2	RAPGEF2	4	160271430	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36	160271430	30882846	1551	27238										
FSTL5	0	genome.wustl.edu	37	chr4	162307214	162307214	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagtaaaggatggttgaaaTgccagatcagatatgtgcag	12	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	162307214	162307214	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	silent	c.2229	p.A743	0.923	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	93	0	0	51	20	28.17	-	-	-	C	162307214	T	C	162307214	2	2	275	1	0	0	0	0	0	0	0	1	6129	1451	51	5		5	FSTL5	4	162307214	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2035784	162307214	28847062	1552	27239										
TLL1	0	genome.wustl.edu	37	chr4	166981316	166981316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaatttctgtgaagtttgaGttttttgaattggaaggcaa	11	2	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	166981316	166981316	G	T	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	missense	c.1983	p.E661D	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	317	0	0	219	28	11.34	-	-	-	T	166981316	G	T	166981316	3	4	275	1	0	0	0	0	1	0	0	0	16040	1020	36	4	2041	4	TLL1	4	166981316	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4674102	166981316	24172960	1553	27240										
DDX60	0	genome.wustl.edu	37	chr4	169190081	169190081	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcatgacaaggagatgttCccagatttctgctccaattt	8	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	169190081	169190081	C	A	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	nonsense	c.2710	p.E904*	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	338	0	0	187	42	18.34	-	-	-	A	169190081	C	A	169190081	4	1	275	1	0	0	0	0	0	1	0	0	4409	864	30	2	2504	2	DDX60	4	169190081	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2208765	169190081	21964195	1554	27241										
DDX60	0	genome.wustl.edu	37	chr4	169204666	169204666	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttgagtcacgatgattttCgaagagactgtttctaatga	10	5	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	169204666	169204666	C	T	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	silent	c.1653	p.S551	0.895	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	339	0	0	201	47	18.95	-	-	-	T	169204666	C	T	169204666	2	4	275	1	0	0	0	0	0	0	0	1	4409	871	31	1		1	DDX60	4	169204666	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14585	169204666	21949610	1555	27242										
DDX60L	0	genome.wustl.edu	37	chr4	169296663	169296663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaaaatcctccgggagttCggcaaggatcacctatgggc	11	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	169296663	169296663	C	T	SNP	DDX60L	ENST00000260184	human	ensembl	69_37n	-1	known	missense	c.4498	p.E1500K	0.910	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	165	0	0	85	12	12.37	-	-	-	T	169296663	C	T	169296663	3	4	275	1	0	0	0	0	1	0	0	0	4410	893	31	1	642	1	DDX60L	4	169296663	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	91997	169296663	21857613	1556	27243										
DDX60L	0	genome.wustl.edu	37	chr4	169325143	169325143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttacttacaaaaaaaataTtgcaggcaacttatccattt	4	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	169325143	169325143	T	G	SNP	DDX60L	ENST00000260184	human	ensembl	69_37n	-1	known	missense	c.3328	p.I1110L	0.243	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	74	0	0	43	22	33.85	-	-	-	G	169325143	T	G	169325143	3	3	275	1	0	0	0	0	1	0	0	0	4410	1493	52	5	1848	5	DDX60L	4	169325143	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	28480	169325143	21829133	1557	27244										
DDX60L	0	genome.wustl.edu	37	chr4	169362504	169362504	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaccttgaatgaccgatttCtcttgtctaagaaaatgtct	7	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	169362504	169362504	C	A	SNP	DDX60L	ENST00000260184	human	ensembl	69_37n	-1	known	missense	c.1278	p.E426D	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	145	0	0	76	22	22.45	-	-	-	A	169362504	C	A	169362504	3	1	275	1	0	0	0	0	1	0	0	0	4410	912	32	2	3958	2	DDX60L	4	169362504	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37361	169362504	21791772	1558	27245										
NEK1	0	genome.wustl.edu	37	chr4	170477099	170477099	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacctttctggaagacctcGaccatatatttctcttttcc	4	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	170477099	170477099	G	A	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	nonsense	c.1414	p.R472*	0.011	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	486	0	0	308	68	18.04	-	-	-	A	170477099	G	A	170477099	4	1	275	1	0	0	0	0	0	1	0	0	10393	1066	37	1	2438	1	NEK1	4	170477099	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1114595	170477099	20677177	1559	27246										
GLRA3	0	genome.wustl.edu	37	chr4	175649778	175649778	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtcgaggtctaaagagtcGtcaggatattcactgtacgc	13	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	175649778	175649778	G	A	SNP	GLRA3	ENST00000274093	human	ensembl	69_37n	-1	known	silent	c.339	p.D113	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Glycine_rcpt_A,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451	239	1	0.42	156	36	18.75	-	-	-	A	175649778	G	A	175649778	2	1	275	1	0	0	0	0	0	0	0	1	6508	1136	40	1		1	GLRA3	4	175649778	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5172679	175649778	15504498	1560	27247										
NEIL3	0	genome.wustl.edu	37	chr4	178256872	178256872	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatgaaaggcttcatcatGattaatccacttgagtataa	8	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	178256872	178256872	G	T	SNP	NEIL3	ENST00000264596	human	ensembl	69_37n	1	known	missense	c.309	p.M103I	0.982	superfamily_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674	131	0	0	96	35	26.72	-	-	-	T	178256872	G	T	178256872	3	4	275	1	0	0	0	0	1	0	0	0	10392	1290	45	2	319	2	NEIL3	4	178256872	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2607094	178256872	12897404	1561	27248										
ODZ3	0	genome.wustl.edu	37	chr4	183713542	183713542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacaccatgcagaccatccGatccattggctactaccgca	6	17	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	183713542	183713542	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.5717	p.R1906Q	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	54	0	0	25	6	19.35	-	-	-	A	183713542	G	A	183713542	3	1	275	1	0	0	0	0	1	0	0	0	10909	1058	37	1	5815	1	ODZ3	4	183713542	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5456670	183713542	7440734	1562	27249										
DCTD	0	genome.wustl.edu	37	chr4	183815718	183815718	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacagcctttcacatcggtCgaatttttgttcatgatggc	8	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	183815718	183815718	C	T	SNP	DCTD	ENST00000357067	human	ensembl	69_37n	-1	known	silent	c.318	p.S106	0.491	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like,pirsf_dCMP_deaminase	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like,pirsf_dCMP_deaminase	-	no_errors	DCTD	HGNC	ENSG00000129187	294	1	0.34	140	19	11.95	-	-	-	T	183815718	C	T	183815718	2	4	275	1	0	0	0	0	0	0	0	1	4336	871	31	1		1	DCTD	4	183815718	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102176	183815718	7338558	1563	27250										
STOX2	0	genome.wustl.edu	37	chr4	184930789	184930789	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaagcagtcaaaaaaattCgggctaaagttattccggtt	9	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	184930789	184930789	C	T	SNP	STOX2	ENST00000308497	human	ensembl	69_37n	1	known	silent	c.798	p.F266	0.831	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320	39	0	0	12	5	29.41	-	-	-	T	184930789	C	T	184930789	2	4	275	1	0	0	0	0	0	0	0	1	15411	883	31	1		1	STOX2	4	184930789	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1115071	184930789	6223487	1564	27251										
ENPP6	0	genome.wustl.edu	37	chr4	185033885	185033885	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagagacaaactttcctttCttgtaatagaacctgcttgg	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	185033885	185033885	C	A	SNP	ENPP6	ENST00000296741	human	ensembl	69_37n	-1	known	missense	c.933	p.K311N	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303	216	0	0	136	20	12.82	-	-	-	A	185033885	C	A	185033885	3	1	275	1	0	0	0	0	1	0	0	0	5171	912	32	2	401	2	ENPP6	4	185033885	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103096	185033885	6120391	1565	27252										
CASP3	0	genome.wustl.edu	37	chr4	185550446	185550446	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagtgataaaaatagagttCttttgtgagcatggaaacaa	9	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	185550446	185550446	C	A	SNP	CASP3	ENST00000308394	human	ensembl	69_37n	-1	known	nonsense	c.814	p.E272*	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,prints_Pept_C14_p45_core	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP3	HGNC	ENSG00000164305	244	0	0	166	60	26.55	-	-	-	A	185550446	C	A	185550446	4	1	275	1	0	0	0	0	0	1	0	0	2697	922	32	2	23	2	CASP3	4	185550446	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	516561	185550446	5603830	1566	27253										
ACSL1	0	genome.wustl.edu	37	chr4	185678839	185678839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaagtctcaccatatcttCgaggatagcttttttgacat	6	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	185678839	185678839	C	T	SNP	ACSL1	ENST00000281455	human	ensembl	69_37n	-1	known	missense	c.1906	p.E636K	0.999	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726	356	1	0.28	291	38	11.55	-	-	-	T	185678839	C	T	185678839	3	4	275	1	0	0	0	0	1	0	0	0	177	893	31	1	198	1	ACSL1	4	185678839	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	128393	185678839	5475437	1567	27254										
ACSL1	0	genome.wustl.edu	37	chr4	185681557	185681557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgagcaacaggctcacttCgcatgtagatattttcaatc	7	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	185681557	185681557	C	T	SNP	ACSL1	ENST00000281455	human	ensembl	69_37n	-1	known	missense	c.1736	p.R579Q	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726	368	0	0	190	49	20.5	-	-	-	T	185681557	C	T	185681557	3	4	275	1	0	0	0	0	1	0	0	0	177	884	31	1	376	1	ACSL1	4	185681557	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2718	185681557	5472719	1568	27255										
ACSL1	0	genome.wustl.edu	37	chr4	185724638	185724638	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcaaccagctctggcattcGaaaataccggaacagctcat	8	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	185724638	185724638	G	A	SNP	ACSL1	ENST00000281455	human	ensembl	69_37n	-1	known	nonsense	c.31	p.R11*	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726	243	0	0	172	79	31.47	-	-	-	A	185724638	G	A	185724638	4	1	275	1	0	0	0	0	0	1	0	0	177	1066	37	1	2145	1	ACSL1	4	185724638	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43081	185724638	5429638	1569	27256										
KIAA1430	0	genome.wustl.edu	37	chr4	186097055	186097055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgcttcccggcttttccGcctgtcttgacagttctttc	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	186097055	186097055	G	A	SNP	KIAA1430	ENST00000296775	human	ensembl	69_37n	-1	known	missense	c.1205	p.A402V	1.000	NULL	NULL	-	no_errors	KIAA1430	HGNC	ENSG00000164323	269	0	0	193	30	13.45	-	-	-	A	186097055	G	A	186097055	3	1	275	1	0	0	0	0	1	0	0	0	8284	1087	38	1	405	1	KIAA1430	4	186097055	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	372417	186097055	5057221	1570	27257										
SNX25	0	genome.wustl.edu	37	chr4	186284650	186284650	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaaccaccagaaaaatgtCtgtgtaataatagacatgaa	6	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	186284650	186284650	C	A	SNP	SNX25	ENST00000512853	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNX25	HGNC	ENSG00000109762	89	0	0	72	10	12.2	-	-	-	A	186284650	C	A	186284650	1	1	275	0	1	0	0	0	0	0	0	0	14985	928	32	2		2	SNX25	4	186284650	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	187595	186284650	4869626	1571	27258										
UFSP2	0	genome.wustl.edu	37	chr4	186339818	186339818	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtttatgtcactgctaggCcatatatacactgaactgtg	9	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	186339818	186339818	C	T	SNP	UFSP2	ENST00000264689	human	ensembl	69_37n	-1	known	nonsense	c.189	p.W63*	1.000	NULL	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775	231	0	0	149	19	11.31	-	-	-	T	186339818	C	T	186339818	4	4	275	1	0	0	0	0	0	1	0	0	17035	740	26	4	1260	4	UFSP2	4	186339818	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	55168	186339818	4814458	1572	27259										
CCDC110	0	genome.wustl.edu	37	chr4	186380044	186380044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttccatttctatactcattCgattattttcattatttaca	1	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	186380044	186380044	C	T	SNP	CCDC110	ENST00000307588	human	ensembl	69_37n	-1	known	missense	c.1697	p.R566Q	0.000	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491	152	0	0	122	22	15.28	-	-	-	T	186380044	C	T	186380044	3	4	275	1	0	0	0	0	1	0	0	0	2772	884	31	1	812	1	CCDC110	4	186380044	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40226	186380044	4774232	1573	27260										
SORBS2	0	genome.wustl.edu	37	chr4	186544436	186544436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtctgtttcttaggagccGaattttttttcctccggaaa	8	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	186544436	186544436	G	A	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.2135	p.S712L	0.183	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	136	0	0	64	39	37.14	-	-	-	A	186544436	G	A	186544436	3	1	275	1	0	0	0	0	1	0	0	0	15017	1059	37	1	1203	1	SORBS2	4	186544436	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	164392	186544436	4609840	1574	27261										
CYP4V2	0	genome.wustl.edu	37	chr4	187131688	187131688	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgaggcacttttggataGaatccaaccagaaaagagaa	9	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	187131688	187131688	G	T	SNP	CYP4V2	ENST00000378802	human	ensembl	69_37n	1	known	nonsense	c.1471	p.E491*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4V2	HGNC	ENSG00000145476	554	0	0	406	46	10.18	-	-	-	T	187131688	G	T	187131688	4	4	275	1	0	0	0	0	0	1	0	0	4223	943	33	2	1513	2	CYP4V2	4	187131688	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	587252	187131688	4022588	1575	27262										
KLKB1	0	genome.wustl.edu	37	chr4	187172699	187172699	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggagaagaattgaatgtGacttttgttaaaggagtgaa	14	1	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	187172699	187172699	G	T	SNP	KLKB1	ENST00000511608	human	ensembl	69_37n	1	putative	nonstop	c.1070	p.*357L	0.004	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Cyt_P450,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Cyt_P450,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KLKB1	HGNC	ENSG00000164344	323	1	0.31	136	21	13.38	-	-	-	T	187172699	G	T	187172699	4	4	275	1	0	0	0	0	0	0	0	0	8465	1277	45	2	957	2	KLKB1	4	187172699	Nonstop_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41011	187172699	3981577	1576	27263										
KLKB1	0	genome.wustl.edu	37	chr4	187172904	187172904	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgttcatttcatctaggTgtaagtgtttcttaagatta	7	5	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	187172904	187172904	T	C	SNP	KLKB1	ENST00000264690	human	ensembl	69_37n	1	known	missense	c.1033	p.C345R	1.000	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A	-	no_errors	KLKB1	HGNC	ENSG00000164344	303	1	0.33	128	20	13.42	-	-	-	C	187172904	T	C	187172904	3	2	275	1	0	0	0	0	1	0	0	0	8465	1710	59	5	1067	5	KLKB1	4	187172904	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	205	187172904	3981372	1577	27264										
FAT1	0	genome.wustl.edu	37	chr4	187541295	187541295	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccactgtaacaagatattCtttatttaaggtgtcaagct	6	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	187541295	187541295	C	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6445	p.E2149K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	86	0	0	27	9	25	-	-	-	T	187541295	C	T	187541295	3	4	275	1	0	0	0	0	1	0	0	0	5735	922	32	2	7393	2	FAT1	4	187541295	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	368391	187541295	3612981	1578	27265										
FAT1	0	genome.wustl.edu	37	chr4	187629328	187629328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaattgtagcaaggacttCgacttcccggcggtacggca	12	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	4	187629328	187629328	C	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.1654	p.E552K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	47	0	0	31	13	29.55	-	-	-	T	187629328	C	T	187629328	3	4	275	1	0	0	0	0	1	0	0	0	5735	893	31	1	12216	1	FAT1	4	187629328	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	88033	187629328	3524948	1579	27266										
CEP72	0	genome.wustl.edu	37	chr5	644469	644469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagaacagtaggttaaaatCgcttttgttgagtatgaaaa	10	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	644469	644469	C	T	SNP	CEP72	ENST00000264935	human	ensembl	69_37n	1	known	missense	c.1595	p.S532L	0.030	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877	54	0	0	23	5	17.86	-	-	-	T	644469	C	T	644469	3	4	275	1	0	0	0	0	1	0	0	0	3289	893	31	1	1633	1	CEP72	5	644469	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		644469	180270791	1580	27267										
ZDHHC11	0	genome.wustl.edu	37	chr5	837569	837569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgcggttattaatgagatActcaaaggtggtcatcttct	9	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	837569	837569	A	G	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	missense	c.811	p.Y271H	0.004	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	204	0	0	119	34	22.22	-	-	-	G	837569	A	G	837569	3	3	275	1	0	0	0	0	1	0	0	0	17697	391	14	5	455	5	ZDHHC11	5	837569	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	193100	837569	180077691	1581	27268										
NSUN2	0	genome.wustl.edu	37	chr5	6620376	6620376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggacgagcaggtagcagcGcttgttgtccacatcattcg	12	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	6620376	6620376	G	A	SNP	NSUN2	ENST00000264670	human	ensembl	69_37n	-1	known	missense	c.658	p.R220C	1.000	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474	74	0	0	68	13	16.05	-	-	-	A	6620376	G	A	6620376	3	1	275	1	0	0	0	0	1	0	0	0	10751	1087	38	1	1697	1	NSUN2	5	6620376	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5782807	6620376	174294884	1582	27269										
SEMA5A	0	genome.wustl.edu	37	chr5	9122852	9122852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgtcgcaggagcgggttCgacagaggcaggatcccacg	17	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	9122852	9122852	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.1697	p.R566Q	0.996	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	26	0	0	26	12	31.58	-	-	-	T	9122852	C	T	9122852	3	4	275	1	0	0	0	0	1	0	0	0	14125	884	31	1	1567	1	SEMA5A	5	9122852	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2502476	9122852	171792408	1583	27270										
SEMA5A	0	genome.wustl.edu	37	chr5	9224845	9224845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggtaaaatgcctaggcttCggtaaatggcaggatcacgt	13	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	9224845	9224845	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.587	p.R196Q	0.980	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	369	0	0	278	56	16.72	-	-	-	T	9224845	C	T	9224845	3	4	275	1	0	0	0	0	1	0	0	0	14125	884	31	1	2701	1	SEMA5A	5	9224845	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101993	9224845	171690415	1584	27271										
TAS2R1	0	genome.wustl.edu	37	chr5	9629981	9629981	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaacaactgcagaaaaattCtagaaactgccagacaagaa	7	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	9629981	9629981	C	A	SNP	TAS2R1	ENST00000382492	human	ensembl	69_37n	-1	known	missense	c.164	p.R55I	0.216	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R1	HGNC	ENSG00000169777	63	0	0	42	13	23.64	-	-	-	A	9629981	C	A	9629981	3	1	275	1	0	0	0	0	1	0	0	0	15657	913	32	2	739	2	TAS2R1	5	9629981	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	405136	9629981	171285279	1585	27272										
DNAH5	0	genome.wustl.edu	37	chr5	13700902	13700902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgggaggggcagaaatgtCgtccttcatccatttggtga	14	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13700902	13700902	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.13570	p.D4524N	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	277	0	0	147	66	30.84	-	-	-	T	13700902	C	T	13700902	3	4	275	1	0	0	0	0	1	0	0	0	4640	884	31	1	312	1	DNAH5	5	13700902	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4070921	13700902	167214358	1586	27273										
DNAH5	0	genome.wustl.edu	37	chr5	13701435	13701435	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgggggttaaaaaaaccCgtcatccaaaagcagtgagg	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13701435	13701435	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.13449	p.T4483	0.707	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	234	0	0	131	79	37.44	-	-	-	T	13701435	C	T	13701435	2	4	275	1	0	0	0	0	0	0	0	1	4640	639	23	1		1	DNAH5	5	13701435	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	533	13701435	167213825	1587	27274										
DNAH5	0	genome.wustl.edu	37	chr5	13842011	13842011	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgacagaattcgatcataGatctatgttagaaaccaaaa	6	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13842011	13842011	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.5274	p.I1758	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	107	1	0.93	66	17	20	-	-	-	A	13842011	G	A	13842011	2	1	275	1	0	0	0	0	0	0	0	1	4640	932	33	2		2	DNAH5	5	13842011	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	140576	13842011	167073249	1588	27275										
DNAH5	0	genome.wustl.edu	37	chr5	13913884	13913884	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccatgtcttccagcccttCaattgtggaatcttgcagga	10	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13913884	13913884	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1504	p.E502K	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	388	0	0	229	29	11.24	-	-	-	T	13913884	C	T	13913884	3	4	275	1	0	0	0	0	1	0	0	0	4640	835	29	2	12646	2	DNAH5	5	13913884	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71873	13913884	167001376	1589	27276										
DNAH5	0	genome.wustl.edu	37	chr5	13919382	13919382	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtagttaaacttggagagtCtttttttccagtgctccagc	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13919382	13919382	C	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.878	p.R293I	0.995	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	192	0	0	113	36	24.16	-	-	-	A	13919382	C	A	13919382	3	1	275	1	0	0	0	0	1	0	0	0	4640	913	32	2	13288	2	DNAH5	5	13919382	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5498	13919382	166995878	1590	27277										
DNAH5	0	genome.wustl.edu	37	chr5	13944506	13944506	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaccgttaaaactcgagtGacgctatgcttccagagctg	9	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	13944506	13944506	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.42	p.V14	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	187	0	0	149	34	18.58	-	-	-	T	13944506	G	T	13944506	2	4	275	1	0	0	0	0	0	0	0	1	4640	1277	45	2		2	DNAH5	5	13944506	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25124	13944506	166970754	1591	27278										
TRIO	0	genome.wustl.edu	37	chr5	14290896	14290896	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaactcctgagtttgatggCtgcctggaatacaaccacga	9	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	14290896	14290896	C	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.612	p.G204	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	171	0	0	122	36	22.78	-	-	-	T	14290896	C	T	14290896	2	4	275	1	0	0	0	0	0	0	0	1	16648	784	28	4		4	TRIO	5	14290896	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	346390	14290896	166624364	1592	27279										
TRIO	0	genome.wustl.edu	37	chr5	14399070	14399070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacccaaaaaccttaattcGaaagggtcgagaacggcatc	10	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	14399070	14399070	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.4505	p.R1502Q	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	257	0	0	323	45	12.23	-	-	-	A	14399070	G	A	14399070	3	1	275	1	0	0	0	0	1	0	0	0	16648	1058	37	1	4623	1	TRIO	5	14399070	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	108174	14399070	166516190	1593	27280										
TRIO	0	genome.wustl.edu	37	chr5	14482735	14482735	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctcttgcaggacacattCttggtcacagaccaagatgc	9	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	14482735	14482735	C	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.6510	p.F2170L	0.970	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	200	0	0	147	23	13.53	-	-	-	A	14482735	C	A	14482735	3	1	275	1	0	0	0	0	1	0	0	0	16648	912	32	2	6692	2	TRIO	5	14482735	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83665	14482735	166432525	1594	27281										
MARCH11	0	genome.wustl.edu	37	chr5	16091158	16091158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attacagcaatcatctgaacTttctcaaccagtgttataga	5	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	16091158	16091158	T	G	SNP	MARCH11	ENST00000332432	human	ensembl	69_37n	-1	known	missense	c.726	p.K242N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH11	HGNC	ENSG00000183654	219	0	0	154	50	24.51	-	-	-	G	16091158	T	G	16091158	3	3	275	1	0	0	0	0	1	0	0	0	9371	1606	56	5	490	5	MARCH11	5	16091158	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1608423	16091158	164824102	1595	27282										
MYO10	0	genome.wustl.edu	37	chr5	16701698	16701698	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaactcctgggccgcccTgcacgcttcctcctccagcc	10	19	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	16701698	16701698	T	A	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.2806	p.R936W	0.993	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	89	0	0	59	23	28.05	-	-	-	A	16701698	T	A	16701698	3	1	275	1	0	0	0	0	1	0	0	0	10134	1579	55	5	3438	5	MYO10	5	16701698	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	610540	16701698	164213562	1596	27283										
MYO10	0	genome.wustl.edu	37	chr5	16818131	16818131	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttacatatatttgatttCtcttataccgctggaataag	5	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	16818131	16818131	C	A	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.266	p.R89I	0.990	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	103	0	0	86	27	23.89	-	-	-	A	16818131	C	A	16818131	3	1	275	1	0	0	0	0	1	0	0	0	10134	913	32	2	6066	2	MYO10	5	16818131	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	116433	16818131	164097129	1597	27284										
BASP1	0	genome.wustl.edu	37	chr5	17275436	17275436	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggaagaggaggggaccccGaaggagagtgagccccaggc	18	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	17275436	17275436	G	A	SNP	BASP1	ENST00000322611	human	ensembl	69_37n	1	known	silent	c.111	p.P37	0.706	pfam_BASP1	pfam_BASP1	-	no_errors	BASP1	HGNC	ENSG00000176788	168	0	0	65	10	13.33	-	-	-	A	17275436	G	A	17275436	2	1	275	1	0	0	0	0	0	0	0	1	1321	1045	37	1		1	BASP1	5	17275436	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	457305	17275436	163639824	1598	27285										
CDH12	0	genome.wustl.edu	37	chr5	21817099	21817099	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtatcctcatctgtgacGatgtcaaacaaatttccccc	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	21817099	21817099	G	A	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	silent	c.957	p.I319	0.111	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	341	0	0	207	35	14.46	-	-	-	A	21817099	G	A	21817099	2	1	275	1	0	0	0	0	0	0	0	1	3127	1048	37	1		1	CDH12	5	21817099	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4541663	21817099	159098161	1599	27286										
CDH9	0	genome.wustl.edu	37	chr5	26881369	26881369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagattccaaagaactgagcGaatctgctatggaatcattc	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	26881369	26881369	G	A	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.2246	p.S749L	0.999	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	266	0	0	113	54	32.34	-	-	-	A	26881369	G	A	26881369	3	1	275	1	0	0	0	0	1	0	0	0	3146	1059	37	1	127	1	CDH9	5	26881369	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5064270	26881369	154033891	1600	27287										
PDZD2	0	genome.wustl.edu	37	chr5	31995786	31995786	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcgctcacctcacgctatCgttgtcactcaagtgaagga	9	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	31995786	31995786	C	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	silent	c.1083	p.I361	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	393	0	0	302	36	10.65	-	-	-	A	31995786	C	A	31995786	2	1	275	1	0	0	0	0	0	0	0	1	11774	874	31	3		3	PDZD2	5	31995786	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5114417	31995786	148919474	1601	27288										
PDZD2	0	genome.wustl.edu	37	chr5	32098721	32098721	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctgtccagaaagaccatCcccctggagcctggcattgg	11	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	32098721	32098721	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	silent	c.8199	p.I2733	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	58	0	0	42	17	28.81	-	-	-	T	32098721	C	T	32098721	2	4	275	1	0	0	0	0	0	0	0	1	11774	845	30	2		2	PDZD2	5	32098721	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102935	32098721	148816539	1602	27289										
PDZD2	0	genome.wustl.edu	37	chr5	32108269	32108269	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagaatcattttctcagttCtcttctttctttagcaaatc	3	10	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	32108269	32108269	C	T	SNP	PDZD2	ENST00000397559	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401	199	0	0	148	24	13.95	-	-	-	T	32108269	C	T	32108269	1	4	275	0	1	0	0	0	0	0	0	0	11774	928	32	2		2	PDZD2	5	32108269	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9548	32108269	148806991	1603	27290										
TARS	0	genome.wustl.edu	37	chr5	33455805	33455805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaactttactggcaatgtTtaaggtaaattgaaccatag	8	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	33455805	33455805	T	A	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.689	p.F230Y	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	101	0	0	65	10	13.33	-	-	-	A	33455805	T	A	33455805	3	1	275	1	0	0	0	0	1	0	0	0	15651	1841	64	5	711	5	TARS	5	33455805	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1347536	33455805	147459455	1604	27291										
TARS	0	genome.wustl.edu	37	chr5	33467054	33467054	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtacattgaataaaaagattCgaaatgcacagttagcacag	8	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	33467054	33467054	C	T	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	nonsense	c.1987	p.R663*	1.000	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	118	0	0	66	19	22.35	-	-	-	T	33467054	C	T	33467054	4	4	275	1	0	0	0	0	0	1	0	0	15651	876	31	1	2057	1	TARS	5	33467054	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11249	33467054	147448206	1605	27292										
ADAMTS12	0	genome.wustl.edu	37	chr5	33527410	33527410	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggtgggcacagaacatttCttcatggctttcagtgtctg	11	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	33527410	33527410	C	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.4668	p.K1556N	1.000	pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	235	0	0	192	56	22.58	-	-	-	A	33527410	C	A	33527410	3	1	275	1	0	0	0	0	1	0	0	0	257	912	32	2	120	2	ADAMTS12	5	33527410	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60356	33527410	147387850	1606	27293										
C1QTNF3	0	genome.wustl.edu	37	chr5	34020767	34020767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagagcgccattgcccattCgcagccaaacctcatcccct	8	17	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	34020767	34020767	C	T	SNP	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	missense	c.881	p.R294Q	0.998	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	283	0	0	183	53	22.36	-	-	-	T	34020767	C	T	34020767	3	4	275	1	0	0	0	0	1	0	0	0	1983	884	31	1	82	1	C1QTNF3	5	34020767	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	493357	34020767	146894493	1607	27294										
AGXT2	0	genome.wustl.edu	37	chr5	34998868	34998868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgggttaaggcagaacgaaAtacttctactgcaaaatcaa	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	34998868	34998868	A	C	SNP	AGXT2	ENST00000231420	human	ensembl	69_37n	-1	known	missense	c.1501	p.F501V	0.987	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2	HGNC	ENSG00000113492	991	0	0	850	147	14.74	-	-	-	C	34998868	A	C	34998868	3	2	275	1	0	0	0	0	1	0	0	0	405	101	4	5	47	5	AGXT2	5	34998868	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	978101	34998868	145916392	1608	27295										
SPEF2	0	genome.wustl.edu	37	chr5	35704661	35704661	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattttataccatagctgaaGaattgtcctataaaactgct	5	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	35704661	35704661	G	T	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	nonsense	c.2404	p.E802*	0.027	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	390	0	0	181	65	26.32	-	-	-	T	35704661	G	T	35704661	4	4	275	1	0	0	0	0	0	1	0	0	15126	943	33	2	2491	2	SPEF2	5	35704661	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	705793	35704661	145210599	1609	27296										
SPEF2	0	genome.wustl.edu	37	chr5	35795832	35795832	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggtttacaggagatgaaGatataaaaattccagaaaat	9	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	35795832	35795832	G	T	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	missense	c.4765	p.D1589Y	0.985	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	427	0	0	293	47	13.82	-	-	-	T	35795832	G	T	35795832	3	4	275	1	0	0	0	0	1	0	0	0	15126	942	33	2	4916	2	SPEF2	5	35795832	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	91171	35795832	145119428	1610	27297										
SKP2	0	genome.wustl.edu	37	chr5	36152892	36152892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaagcacctccaggagattCcagacctgagtagcaacgtt	11	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	36152892	36152892	C	A	SNP	SKP2	ENST00000274255	human	ensembl	69_37n	1	known	missense	c.28	p.P10T	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	SKP2	HGNC	ENSG00000145604	113	0	0	73	26	26.26	-	-	-	A	36152892	C	A	36152892	3	1	275	1	0	0	0	0	1	0	0	0	14451	855	30	2	34	2	SKP2	5	36152892	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	357060	36152892	144762368	1611	27298										
SLC1A3	0	genome.wustl.edu	37	chr5	36677236	36677236	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcaggccctgagagagttCtttgattctcttaacgaagc	12	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	36677236	36677236	C	A	SNP	SLC1A3	ENST00000265113	human	ensembl	69_37n	1	known	missense	c.810	p.F270L	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	274	0	0	169	72	29.88	-	-	-	A	36677236	C	A	36677236	3	1	275	1	0	0	0	0	1	0	0	0	14522	912	32	2	845	2	SLC1A3	5	36677236	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	524344	36677236	144238024	1612	27299										
NIPBL	0	genome.wustl.edu	37	chr5	36985532	36985532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaaactccaaagcaaaaAaatgaagggcgacctgaaac	8	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	36985532	36985532	A	C	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.2250	p.K750N	0.993	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	336	0	0	216	80	27.03	-	-	-	C	36985532	A	C	36985532	3	2	275	1	0	0	0	0	1	0	0	0	10500	11	1	5	2284	5	NIPBL	5	36985532	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	308296	36985532	143929728	1613	27300										
NIPBL	0	genome.wustl.edu	37	chr5	36986159	36986159	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaaaaattttgtcattccGaaaatcaagagggataaaga	8	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	36986159	36986159	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	silent	c.2877	p.P959	0.997	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	470	0	0	380	56	12.84	-	-	-	A	36986159	G	A	36986159	2	1	275	1	0	0	0	0	0	0	0	1	10500	1045	37	1		1	NIPBL	5	36986159	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	627	36986159	143929101	1614	27301										
NIPBL	0	genome.wustl.edu	37	chr5	37020706	37020706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactggccaaattatgcatcGagctgaaaaccgaaaaaagt	8	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	37020706	37020706	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.5156	p.R1719Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	80	0	0	43	19	30.65	-	-	-	A	37020706	G	A	37020706	3	1	275	1	0	0	0	0	1	0	0	0	10500	1058	37	1	5254	1	NIPBL	5	37020706	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34547	37020706	143894554	1615	27302										
C5orf42	0	genome.wustl.edu	37	chr5	37224364	37224364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactctcttacctttctcttCgatttcttgtagagcttttt	4	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	37224364	37224364	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2572	p.E858K	0.192	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	105	0	0	102	14	12.07	-	-	-	T	37224364	C	T	37224364	3	4	275	1	0	0	0	0	1	0	0	0	2322	893	31	1	7177	1	C5orf42	5	37224364	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	203658	37224364	143690896	1616	27303										
LIFR	0	genome.wustl.edu	37	chr5	38493749	38493749	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgtttgagggaacttttCtccagtccataaggcatggt	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	38493749	38493749	C	A	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	missense	c.2024	p.R675I	0.953	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	224	1	0.44	204	32	13.56	-	-	-	A	38493749	C	A	38493749	3	1	275	1	0	0	0	0	1	0	0	0	8835	913	32	2	1297	2	LIFR	5	38493749	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1269385	38493749	142421511	1617	27304										
C9	0	genome.wustl.edu	37	chr5	39308422	39308422	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccagagatacatccagatGatacccaaggcatctcttta	7	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	39308422	39308422	G	T	SNP	C9	ENST00000263408	human	ensembl	69_37n	-1	known	missense	c.1150	p.H384N	0.001	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C9	HGNC	ENSG00000113600	1063	2	0.19	549	64	10.44	-	-	-	T	39308422	G	T	39308422	3	4	275	1	0	0	0	0	1	0	0	0	2468	1290	45	2	545	2	C9	5	39308422	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	814673	39308422	141606838	1618	27305										
CARD6	0	genome.wustl.edu	37	chr5	40841638	40841638	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactctggagaatgttacaGatctcctgaagaaaagtcgg	11	7	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	40841638	40841638	G	T	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	missense	c.154	p.D52Y	1.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	175	0	0	157	19	10.8	-	-	-	T	40841638	G	T	40841638	3	4	275	1	0	0	0	0	1	0	0	0	2675	942	33	2	156	2	CARD6	5	40841638	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1533216	40841638	140073622	1619	27306										
CARD6	0	genome.wustl.edu	37	chr5	40843429	40843429	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttcagggacaagaaaacTagttatagggaaacagcttt	9	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	40843429	40843429	T	G	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	silent	c.459	p.T153	0.001	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	98	0	0	62	21	25.3	-	-	-	G	40843429	T	G	40843429	2	3	275	1	0	0	0	0	0	0	0	1	2675	1509	53	5		5	CARD6	5	40843429	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1791	40843429	140071831	1620	27307										
CARD6	0	genome.wustl.edu	37	chr5	40853287	40853287	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggggagatgctggggataGaaggaagaacatggagggcc	20	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	40853287	40853287	G	T	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	missense	c.1853	p.R618I	0.000	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	201	0	0	172	31	15.27	-	-	-	T	40853287	G	T	40853287	3	4	275	1	0	0	0	0	1	0	0	0	2675	942	33	2	1863	2	CARD6	5	40853287	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9858	40853287	140061973	1621	27308										
HEATR7B2	0	genome.wustl.edu	37	chr5	41004559	41004559	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccttcaagctttcacagacGacttcagtgcgagctaggtg	11	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41004559	41004559	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.4083	p.V1361	0.960	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	390	0	0	246	44	15.12	-	-	-	A	41004559	G	A	41004559	2	1	275	1	0	0	0	0	0	0	0	1	7086	1045	37	1		1	HEATR7B2	5	41004559	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	151272	41004559	139910701	1622	27309										
HEATR7B2	0	genome.wustl.edu	37	chr5	41048429	41048429	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccccaatcccttgtaccttCcagaggctgcagaagctcag	9	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41048429	41048429	C	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	nonsense	c.1681	p.E561*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	280	0	0	214	32	13.01	-	-	-	A	41048429	C	A	41048429	4	1	275	1	0	0	0	0	0	1	0	0	7086	864	30	2	3184	2	HEATR7B2	5	41048429	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43870	41048429	139866831	1623	27310										
PLCXD3	0	genome.wustl.edu	37	chr5	41382049	41382049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttctctcagtgatggatgCttgaagaaactggatcagtt	10	7	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41382049	41382049	C	T	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	missense	c.691	p.A231T	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	242	0	0	163	28	14.51	-	-	-	T	41382049	C	T	41382049	3	4	275	1	0	0	0	0	1	0	0	0	12117	797	28	4	282	4	PLCXD3	5	41382049	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	333620	41382049	139533211	1624	27311										
PLCXD3	0	genome.wustl.edu	37	chr5	41382379	41382379	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctcaaggccttcattgaCtttggcactgaacaaaccat	6	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41382379	41382379	C	A	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	missense	c.361	p.V121F	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	298	0	0	193	37	16.09	-	-	-	A	41382379	C	A	41382379	3	1	275	1	0	0	0	0	1	0	0	0	12117	565	20	4	612	4	PLCXD3	5	41382379	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	330	41382379	139532881	1625	27312										
OXCT1	0	genome.wustl.edu	37	chr5	41739516	41739516	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatcacacccagtactcttCtgtacgtcatccactgtcag	5	14	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41739516	41739516	C	A	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1497	p.Q499H	0.905	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	178	0	0	151	42	21.76	-	-	-	A	41739516	C	A	41739516	3	1	275	1	0	0	0	0	1	0	0	0	11402	912	32	2	73	2	OXCT1	5	41739516	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	357137	41739516	139175744	1626	27313										
OXCT1	0	genome.wustl.edu	37	chr5	41801159	41801159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcatcagcttcatgttgtCgtggatatggaccctgtcaa	10	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41801159	41801159	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1064	p.R355Q	0.006	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	267	0	0	159	20	11.17	-	-	-	T	41801159	C	T	41801159	3	4	275	1	0	0	0	0	1	0	0	0	11402	884	31	1	526	1	OXCT1	5	41801159	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61643	41801159	139114101	1627	27314										
OXCT1	0	genome.wustl.edu	37	chr5	41803188	41803188	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taccaaacccagaactccatTttcactttgaagatgaacag	5	11	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41803188	41803188	T	G	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1033	p.N345H	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	180	1	0.55	109	20	15.5	-	-	-	G	41803188	T	G	41803188	3	3	275	1	0	0	0	0	1	0	0	0	11402	1841	64	5	561	5	OXCT1	5	41803188	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2029	41803188	139112072	1628	27315										
C5orf51	0	genome.wustl.edu	37	chr5	41917380	41917380	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaaacaaattttaaacttCtttcatcatcgctgtaacta	3	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41917380	41917380	C	A	SNP	C5orf51	ENST00000381647	human	ensembl	69_37n	1	known	missense	c.864	p.F288L	1.000	NULL	NULL	-	no_errors	C5orf51	HGNC	ENSG00000205765	313	0	0	265	53	16.67	-	-	-	A	41917380	C	A	41917380	3	1	275	1	0	0	0	0	1	0	0	0	2329	912	32	2	886	2	C5orf51	5	41917380	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	114192	41917380	138997880	1629	27316										
FBXO4	0	genome.wustl.edu	37	chr5	41941351	41941351	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaatggcattgagtggattCttgaagaagtggaatctaag	13	3	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	41941351	41941351	C	A	SNP	FBXO4	ENST00000281623	human	ensembl	69_37n	1	known	missense	c.1132	p.L378I	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO4	HGNC	ENSG00000151876	368	1	0.27	227	36	13.69	-	-	-	A	41941351	C	A	41941351	3	1	275	1	0	0	0	0	1	0	0	0	5794	913	32	2	1184	2	FBXO4	5	41941351	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23971	41941351	138973909	1630	27317										
GHR	0	genome.wustl.edu	37	chr5	42718876	42718876	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttaaaaggggaagcagatCtcttatgccttgaccagaag	12	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	42718876	42718876	C	A	SNP	GHR	ENST00000230882	human	ensembl	69_37n	1	known	missense	c.1267	p.L423I	1.000	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964	70	0	0	34	10	22.73	-	-	-	A	42718876	C	A	42718876	3	1	275	1	0	0	0	0	1	0	0	0	6423	913	32	2	1301	2	GHR	5	42718876	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	777525	42718876	138196384	1631	27318										
GHR	0	genome.wustl.edu	37	chr5	42719447	42719447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcatactcaatgcgactgCcttgcccttgcctgacaaag	7	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	42719447	42719447	C	T	SNP	GHR	ENST00000230882	human	ensembl	69_37n	1	known	missense	c.1838	p.A613V	0.971	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964	108	0	0	49	20	28.99	-	-	-	T	42719447	C	T	42719447	3	4	275	1	0	0	0	0	1	0	0	0	6423	739	26	4	1872	4	GHR	5	42719447	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	571	42719447	138195813	1632	27319										
HMGCS1	0	genome.wustl.edu	37	chr5	43298832	43298832	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcataggaaaggttatttCtctccataagattctgaacc	6	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	43298832	43298832	C	A	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	missense	c.236	p.R79I	1.000	pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	149	0	0	109	23	17.42	-	-	-	A	43298832	C	A	43298832	3	1	275	1	0	0	0	0	1	0	0	0	7283	913	32	2	1362	2	HMGCS1	5	43298832	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	579385	43298832	137616428	1633	27320										
HMGCS1	0	genome.wustl.edu	37	chr5	43299051	43299051	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaagcttctgcattcaaaGgaagtgatccaggcatggtg	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	43299051	43299051	G	T	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	missense	c.17	p.P6H	1.000	NULL	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	57	0	0	39	7	15.22	-	-	-	T	43299051	G	T	43299051	3	4	275	1	0	0	0	0	1	0	0	0	7283	1000	35	4	1581	4	HMGCS1	5	43299051	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	219	43299051	137616209	1634	27321										
C5orf28	0	genome.wustl.edu	37	chr5	43446488	43446488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatatccacaaaccatgacGaatcccatctcggatatgat	6	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	43446488	43446488	G	A	SNP	C5orf28	ENST00000397080	human	ensembl	69_37n	-1	known	missense	c.484	p.R162C	1.000	NULL	NULL	-	no_errors	C5orf28	HGNC	ENSG00000151881	353	0	0	272	39	12.54	-	-	-	A	43446488	G	A	43446488	3	1	275	1	0	0	0	0	1	0	0	0	2310	1058	37	1	167	1	C5orf28	5	43446488	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	147437	43446488	137468772	1635	27322										
C5orf28	0	genome.wustl.edu	37	chr5	43446635	43446635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtagaacagtgaaggaaagGtcttcgcgggagagtcaaag	15	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	43446635	43446635	G	A	SNP	C5orf28	ENST00000397080	human	ensembl	69_37n	-1	known	missense	c.337	p.P113S	1.000	NULL	NULL	-	no_errors	C5orf28	HGNC	ENSG00000151881	120	0	0	85	13	13.27	-	-	-	A	43446635	G	A	43446635	3	1	275	1	0	0	0	0	1	0	0	0	2310	1261	44	4	314	4	C5orf28	5	43446635	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	147	43446635	137468625	1636	27323										
EMB	0	genome.wustl.edu	37	chr5	49699028	49699028	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacctgagtgcttctttttCttttgtgtgtacttttcaca	6	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	49699028	49699028	C	A	SNP	EMB	ENST00000303221	human	ensembl	69_37n	-1	known	missense	c.861	p.K287N	0.876	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	EMB	HGNC	ENSG00000170571	155	0	0	74	29	28.16	-	-	-	A	49699028	C	A	49699028	3	1	275	1	0	0	0	0	1	0	0	0	5122	912	32	2	138	2	EMB	5	49699028	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6252393	49699028	131216232	1637	27324										
PARP8	0	genome.wustl.edu	37	chr5	50056183	50056183	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cataaaatccaaattacaaaAggaaaatggggaggtatgta	9	4	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	50056183	50056183	A	C	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	missense	c.332	p.K111T	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	97	0	0	68	16	19.05	-	-	-	C	50056183	A	C	50056183	3	2	275	1	0	0	0	0	1	0	0	0	11538	72	3	5	350	5	PARP8	5	50056183	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	357155	50056183	130859077	1638	27325										
ISL1	0	genome.wustl.edu	37	chr5	50687233	50687233	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaagtactgagcgacttCgccttgcagagtgacataga	12	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	50687233	50687233	C	T	SNP	ISL1	ENST00000230658	human	ensembl	69_37n	1	known	silent	c.891	p.F297	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC	ENSG00000016082	175	0	0	105	15	12.5	-	-	-	T	50687233	C	T	50687233	2	4	275	1	0	0	0	0	0	0	0	1	7910	883	31	1		1	ISL1	5	50687233	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	631050	50687233	130228027	1639	27326										
ITGA1	0	genome.wustl.edu	37	chr5	52160905	52160905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaagtcgtgaattccattgCccctgtacaaggtacagatt	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	52160905	52160905	C	T	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.485	p.A162V	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	363	0	0	292	39	11.71	-	-	-	T	52160905	C	T	52160905	3	4	275	1	0	0	0	0	1	0	0	0	7926	739	26	4	503	4	ITGA1	5	52160905	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1473672	52160905	128754355	1640	27327										
ITGA1	0	genome.wustl.edu	37	chr5	52211422	52211422	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttggtggtgctgccctcttCtggtatgtattttaataaca	9	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	52211422	52211422	C	T	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	silent	c.1986	p.F662	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	366	0	0	283	51	15.27	-	-	-	T	52211422	C	T	52211422	2	4	275	1	0	0	0	0	0	0	0	1	7926	912	32	2		2	ITGA1	5	52211422	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50517	52211422	128703838	1641	27328										
ITGA2	0	genome.wustl.edu	37	chr5	52344491	52344491	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctgcccttccctcatagAtgttgtggttgtgtgtgatg	12	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	52344491	52344491	A	C	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	missense	c.521	p.D174A	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	1127	1	0.09	603	286	32.17	-	-	-	C	52344491	A	C	52344491	3	2	275	1	0	0	0	0	1	0	0	0	7929	333	12	5	543	5	ITGA2	5	52344491	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	133069	52344491	128570769	1642	27329										
SNX18	0	genome.wustl.edu	37	chr5	53814487	53814487	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaatcgcttctccaccttCgtcaagtccggcggggaggc	11	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	53814487	53814487	C	T	SNP	SNX18	ENST00000326277	human	ensembl	69_37n	1	known	silent	c.705	p.F235	1.000	pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996	28	0	0	10	7	41.18	-	-	-	T	53814487	C	T	53814487	2	4	275	1	0	0	0	0	0	0	0	1	14978	883	31	1		1	SNX18	5	53814487	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1469996	53814487	127100773	1643	27330										
SNX18	0	genome.wustl.edu	37	chr5	53839149	53839149	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaccacttccatcaaattCgagtgagagactttaaatca	5	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	53839149	53839149	C	T	SNP	SNX18	ENST00000381410	human	ensembl	69_37n	1	known	nonsense	c.1762	p.R588*	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996	238	0	0	120	36	23.08	-	-	-	T	53839149	C	T	53839149	4	4	275	1	0	0	0	0	0	1	0	0	14978	876	31	1	2034	1	SNX18	5	53839149	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24662	53839149	127076111	1644	27331										
GZMK	0	genome.wustl.edu	37	chr5	54327360	54327360	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcactgttactgtcctaagtCgaaaactttgcaacagccaa	6	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	54327360	54327360	C	T	SNP	GZMK	ENST00000231009	human	ensembl	69_37n	1	known	nonsense	c.532	p.R178*	0.916	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMK	HGNC	ENSG00000113088	64	0	0	54	18	25	-	-	-	T	54327360	C	T	54327360	4	4	275	1	0	0	0	0	0	1	0	0	6969	876	31	1	546	1	GZMK	5	54327360	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	488211	54327360	126587900	1645	27332										
SKIV2L2	0	genome.wustl.edu	37	chr5	54710022	54710022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatagtctagtgagatgCccaaattaacagaacaatta	6	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	54710022	54710022	C	T	SNP	SKIV2L2	ENST00000230640	human	ensembl	69_37n	1	known	missense	c.2764	p.P922S	1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	523	0	0	317	99	23.74	-	-	-	T	54710022	C	T	54710022	3	4	275	1	0	0	0	0	1	0	0	0	14449	739	26	4	2858	4	SKIV2L2	5	54710022	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	382662	54710022	126205238	1646	27333										
PPAP2A	0	genome.wustl.edu	37	chr5	54721768	54721768	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtttataatcagaaactcGagaaaggcccacataaatgg	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	54721768	54721768	G	A	SNP	PPAP2A	ENST00000264775	human	ensembl	69_37n	-1	known	nonsense	c.652	p.R218*	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2A	HGNC	ENSG00000067113	191	1	0.52	147	18	10.84	-	-	-	A	54721768	G	A	54721768	4	1	275	1	0	0	0	0	0	1	0	0	12363	1066	37	1	213	1	PPAP2A	5	54721768	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11746	54721768	126193492	1647	27334										
SLC38A9	0	genome.wustl.edu	37	chr5	54960639	54960639	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccactgcccaaaggagccGaaataatgtctgcagacatc	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	54960639	54960639	G	A	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	silent	c.579	p.F193	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	69	0	0	48	15	23.08	-	-	-	A	54960639	G	A	54960639	2	1	275	1	0	0	0	0	0	0	0	1	14700	1049	37	1		1	SLC38A9	5	54960639	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	238871	54960639	125954621	1648	27335										
DDX4	0	genome.wustl.edu	37	chr5	55081639	55081639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcagacaggcataaacttCgacaaatacgacactattct	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55081639	55081639	C	T	SNP	DDX4	ENST00000503129	human	ensembl	69_37n	1	known	missense	c.521	p.S174L	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfscan_Helicase_ATP-bd,pfscan_RNA_helicase_DEAD_Q_motif	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX4	HGNC	ENSG00000152670	176	0	0	122	17	12.23	-	-	-	T	55081639	C	T	55081639	3	4	275	1	0	0	0	0	1	0	0	0	4391	883	31	1	891	1	DDX4	5	55081639	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	121000	55081639	125833621	1649	27336										
IL31RA	0	genome.wustl.edu	37	chr5	55168247	55168247	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagatggtgtaattaaatCtcatatgacatactggagat	10	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55168247	55168247	C	A	SNP	IL31RA	ENST00000447346	human	ensembl	69_37n	1	known	missense	c.422	p.S141Y	0.853	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509	244	0	0	193	47	19.58	-	-	-	A	55168247	C	A	55168247	3	1	275	1	0	0	0	0	1	0	0	0	7745	913	32	2	436	2	IL31RA	5	55168247	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86608	55168247	125747013	1650	27337										
IL6ST	0	genome.wustl.edu	37	chr5	55237578	55237578	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggctttttgtcatttgcttCtatttccacaacacttacat	4	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55237578	55237578	C	A	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	nonsense	c.2089	p.E697*	1.000	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	156	0	0	101	17	14.41	-	-	-	A	55237578	C	A	55237578	4	1	275	1	0	0	0	0	0	1	0	0	7757	922	32	2	671	2	IL6ST	5	55237578	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69331	55237578	125677682	1651	27338										
IL6ST	0	genome.wustl.edu	37	chr5	55247364	55247364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtatgctgccattcgtaCcatgtacaatgtgtcactag	9	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55247364	55247364	C	T	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.1768	p.V590I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	276	0	0	196	25	11.31	-	-	-	T	55247364	C	T	55247364	3	4	275	1	0	0	0	0	1	0	0	0	7757	507	18	4	1004	4	IL6ST	5	55247364	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9786	55247364	125667896	1652	27339										
IL6ST	0	genome.wustl.edu	37	chr5	55264183	55264183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacctcattttcttcccctCgttcacaatgcaactcaaat	2	15	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55264183	55264183	C	T	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.412	p.E138K	0.458	pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	591	0	0	537	70	11.51	-	-	-	T	55264183	C	T	55264183	3	4	275	1	0	0	0	0	1	0	0	0	7757	893	31	1	2396	1	IL6ST	5	55264183	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16819	55264183	125651077	1653	27340										
ANKRD55	0	genome.wustl.edu	37	chr5	55407326	55407326	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggtttcttttctggtaagaGatattttgaattgtctgagg	11	4	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	55407326	55407326	G	T	SNP	ANKRD55	ENST00000341048	human	ensembl	69_37n	-1	known	missense	c.1249	p.L417I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512	161	0	0	127	55	30.22	-	-	-	T	55407326	G	T	55407326	3	4	275	1	0	0	0	0	1	0	0	0	680	942	33	2	607	2	ANKRD55	5	55407326	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	143143	55407326	125507934	1654	27341										
GPBP1	0	genome.wustl.edu	37	chr5	56542137	56542137	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttatgcagaatatcctccGaatcctaaatctagagctcc	5	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	56542137	56542137	G	A	SNP	GPBP1	ENST00000424459	human	ensembl	69_37n	1	known	silent	c.549	p.P183	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194	71	0	0	58	7	10.77	-	-	-	A	56542137	G	A	56542137	2	1	275	1	0	0	0	0	0	0	0	1	6645	1045	37	1		1	GPBP1	5	56542137	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1134811	56542137	124373123	1655	27342										
PLK2	0	genome.wustl.edu	37	chr5	57752894	57752894	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaactgtatgacaacagctaGaagacagtctgtccggagtg	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	57752894	57752894	G	T	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	missense	c.1034	p.S345Y	0.978	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	48	0	0	38	11	22.45	-	-	-	T	57752894	G	T	57752894	3	4	275	1	0	0	0	0	1	0	0	0	12170	942	33	2	1051	2	PLK2	5	57752894	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1210757	57752894	123162366	1656	27343										
GAPT	0	genome.wustl.edu	37	chr5	57790634	57790634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggggaaataacacacacGacaactatgaaaatgtggaa	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	57790634	57790634	G	A	SNP	GAPT	ENST00000318469	human	ensembl	69_37n	1	known	missense	c.271	p.D91N	0.000	pfam_GF_rcpt-bound_2-bd_adaptor	pfam_GF_rcpt-bound_2-bd_adaptor	-	no_errors	GAPT	HGNC	ENSG00000175857	227	0	0	160	23	12.5	-	-	-	A	57790634	G	A	57790634	3	1	275	1	0	0	0	0	1	0	0	0	6288	1058	37	1	273	1	GAPT	5	57790634	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	37740	57790634	123124626	1657	27344										
PDE4D	0	genome.wustl.edu	37	chr5	58270587	58270587	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacctgttcatcaaggggAatttcagtagactctgagtc	9	9	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	58270587	58270587	A	G	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	silent	c.2334	p.I778	0.885	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	217	0	0	140	25	15.15	-	-	-	G	58270587	A	G	58270587	2	3	275	1	0	0	0	0	0	0	0	1	11715	242	9	5		5	PDE4D	5	58270587	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	479953	58270587	122644673	1658	27345										
KIF2A	0	genome.wustl.edu	37	chr5	61669521	61669521	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtatttatagggtcaaaGaattgactgtagatccaact	8	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	61669521	61669521	G	T	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	nonsense	c.1768	p.E590*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	378	0	0	257	93	26.57	-	-	-	T	61669521	G	T	61669521	4	4	275	1	0	0	0	0	0	1	0	0	8349	943	33	2	1838	2	KIF2A	5	61669521	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3398934	61669521	119245739	1659	27346										
CWC27	0	genome.wustl.edu	37	chr5	64314060	64314060	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgcaagactcagatacatTtgaaatctatgatcctcgga	7	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	64314060	64314060	T	G	SNP	CWC27	ENST00000381070	human	ensembl	69_37n	1	known	missense	c.1331	p.F444C	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	333	0	0	206	76	26.95	-	-	-	G	64314060	T	G	64314060	3	3	275	1	0	0	0	0	1	0	0	0	4101	1841	64	5	1385	5	CWC27	5	64314060	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2644539	64314060	116601200	1660	27347										
ADAMTS6	0	genome.wustl.edu	37	chr5	64558662	64558662	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgctggactgtcacagtgtCttagggatgaggagacgcct	14	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	64558662	64558662	C	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.1748	p.R583I	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	193	0	0	106	39	26.9	-	-	-	A	64558662	C	A	64558662	3	1	275	1	0	0	0	0	1	0	0	0	270	913	32	2	1657	2	ADAMTS6	5	64558662	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	244602	64558662	116356598	1661	27348										
CD180	0	genome.wustl.edu	37	chr5	66479699	66479699	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttacactgagaactaatttCttgagcaagttcagaccctt	6	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	66479699	66479699	C	A	SNP	CD180	ENST00000256447	human	ensembl	69_37n	-1	known	missense	c.972	p.K324N	0.991	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061	155	0	0	156	18	10.34	-	-	-	A	66479699	C	A	66479699	3	1	275	1	0	0	0	0	1	0	0	0	3001	912	32	2	1017	2	CD180	5	66479699	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1921037	66479699	114435561	1662	27349										
PIK3R1	0	genome.wustl.edu	37	chr5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagtgaatgaaaaacttCgagatacagcagacgggacc	11	7	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	67588951	67588951	C	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	nonsense	c.1042	p.R348*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	215	0	0	112	61	35.26	-	-	-	T	67588951	C	T	67588951	4	4	275	1	0	0	0	0	0	1	0	0	11992	876	31	1	1202	1	PIK3R1	5	67588951	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1109252	67588951	113326309	1663	27350										
PIK3R1	0	genome.wustl.edu	37	chr5	67591076	67591076	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagcaggcagctgagtatCgagaaattgacaaacgtatg	12	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	67591076	67591076	C	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	nonsense	c.1669	p.R557*	0.981	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	332	0	0	204	69	25.27	-	-	-	T	67591076	C	T	67591076	4	4	275	1	0	0	0	0	0	1	0	0	11992	876	31	1	1845	1	PIK3R1	5	67591076	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2125	67591076	113324184	1664	27351										
TAF9	0	genome.wustl.edu	37	chr5	68662387	68662387	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgattttgacgcaagttCtttgcctagtgtggtttttc	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	68662387	68662387	C	A	SNP	TAF9	ENST00000380822	human	ensembl	69_37n	-1	known	nonsense	c.64	p.E22*	1.000	pfam_ATPase_AAA_core	pfam_ATPase_AAA_core	-	no_errors	TAF9	HGNC	ENSG00000085231	381	0	0	202	27	11.79	-	-	-	A	68662387	C	A	68662387	4	1	275	1	0	0	0	0	0	1	0	0	15627	922	32	2	1269	2	TAF9	5	68662387	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1071311	68662387	112252873	1665	27352										
BDP1	0	genome.wustl.edu	37	chr5	70759924	70759924	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaaaactgaaaagccatcGactccagtccagacaagaga	8	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	70759924	70759924	G	A	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	silent	c.639	p.S213	0.001	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	171	0	0	63	24	27.59	-	-	-	A	70759924	G	A	70759924	2	1	275	1	0	0	0	0	0	0	0	1	1399	1045	37	1		1	BDP1	5	70759924	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2097537	70759924	110155336	1666	27353										
MAP1B	0	genome.wustl.edu	37	chr5	71411594	71411594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcaaactttttgtatctcGacactctgcaagattctctc	4	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71411594	71411594	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.254	p.R85Q	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	159	0	0	99	13	11.61	-	-	-	A	71411594	G	A	71411594	3	1	275	1	0	0	0	0	1	0	0	0	9299	1058	37	1	260	1	MAP1B	5	71411594	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	651670	71411594	109503666	1667	27354										
MAP1B	0	genome.wustl.edu	37	chr5	71490034	71490034	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatggtttcaatatgctcatCaatggcggatcagagagaaa	10	6	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71490034	71490034	C	A	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	silent	c.852	p.I284	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	164	0	0	102	19	15.7	-	-	-	A	71490034	C	A	71490034	2	1	275	1	0	0	0	0	0	0	0	1	9299	816	29	2		2	MAP1B	5	71490034	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	78440	71490034	109425226	1668	27355										
MAP1B	0	genome.wustl.edu	37	chr5	71491402	71491402	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagctccctaaagacgcaaaGaaatcatctactcctctgtc	5	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71491402	71491402	G	T	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.2220	p.K740N	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	143	0	0	114	45	28.3	-	-	-	T	71491402	G	T	71491402	3	4	275	1	0	0	0	0	1	0	0	0	9299	933	33	2	2238	2	MAP1B	5	71491402	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1368	71491402	109423858	1669	27356										
MAP1B	0	genome.wustl.edu	37	chr5	71491766	71491766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctcagctggagctaatcGaagacgaagagaaactgaag	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71491766	71491766	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.2584	p.E862K	0.996	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	130	0	0	117	18	13.33	-	-	-	A	71491766	G	A	71491766	3	1	275	1	0	0	0	0	1	0	0	0	9299	1059	37	1	2602	1	MAP1B	5	71491766	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	364	71491766	109423494	1670	27357										
MAP1B	0	genome.wustl.edu	37	chr5	71491777	71491777	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagctaatcgaagacgaagaGaaactgaaggaaactgagcc	12	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71491777	71491777	G	T	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.2595	p.E865D	0.103	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	129	0	0	114	40	25.97	-	-	-	T	71491777	G	T	71491777	3	4	275	1	0	0	0	0	1	0	0	0	9299	933	33	2	2613	2	MAP1B	5	71491777	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11	71491777	109423483	1671	27358										
MRPS27	0	genome.wustl.edu	37	chr5	71519558	71519558	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggactgctctgtttcctcGatgtctaactgctccaccag	8	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71519558	71519558	G	A	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	silent	c.999	p.I333	0.000	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	476	1	0.21	248	83	24.92	-	-	-	A	71519558	G	A	71519558	2	1	275	1	0	0	0	0	0	0	0	1	9910	1048	37	1		1	MRPS27	5	71519558	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	27781	71519558	109395702	1672	27359										
MRPS27	0	genome.wustl.edu	37	chr5	71528382	71528382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaaaaaccacagataaaGcatctagcagaagatgaaag	7	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	71528382	71528382	G	T	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	missense	c.521	p.A174D	1.000	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	204	0	0	140	19	11.95	-	-	-	T	71528382	G	T	71528382	3	4	275	1	0	0	0	0	1	0	0	0	9910	971	34	4	785	4	MRPS27	5	71528382	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8824	71528382	109386878	1673	27360										
FCHO2	0	genome.wustl.edu	37	chr5	72302349	72302349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcattagcaaaagctgatttCgaacagaaaatgacagaaac	8	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	72302349	72302349	C	T	SNP	FCHO2	ENST00000507345	human	ensembl	69_37n	1	novel	missense	c.482	p.S161L	1.000	NULL	pfam_FCH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FCHO2	HGNC	ENSG00000157107	111	0	0	71	15	17.44	-	-	-	T	72302349	C	T	72302349	3	4	275	1	0	0	0	0	1	0	0	0	5834	883	31	1	595	1	FCHO2	5	72302349	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	773967	72302349	108612911	1674	27361										
FCHO2	0	genome.wustl.edu	37	chr5	72373187	72373187	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattgtgaagatcactggtGatatgacaatgtcatttcca	9	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	72373187	72373187	G	T	SNP	FCHO2	ENST00000341845	human	ensembl	69_37n	1	known	missense	c.1714	p.D572Y	1.000	pfam_Muniscin_C-term_mu_dom	pfam_Muniscin_C-term_mu_dom,pfam_FCH,smart_FCH,pfscan_FCH	-	no_errors	FCHO2	HGNC	ENSG00000157107	424	0	0	330	37	10.08	-	-	-	T	72373187	G	T	72373187	3	4	275	1	0	0	0	0	1	0	0	0	5834	1290	45	2	1796	2	FCHO2	5	72373187	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70838	72373187	108542073	1675	27362										
UTP15	0	genome.wustl.edu	37	chr5	72866464	72866464	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacgaacgagtgagagtgttCtctccgttgagcatgggcag	14	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	72866464	72866464	C	A	SNP	UTP15	ENST00000296792	human	ensembl	69_37n	1	known	missense	c.601	p.L201I	0.987	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338	398	1	0.25	188	57	23.27	-	-	-	A	72866464	C	A	72866464	3	1	275	1	0	0	0	0	1	0	0	0	17194	913	32	2	619	2	UTP15	5	72866464	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	493277	72866464	108048796	1676	27363										
COL4A3BP	0	genome.wustl.edu	37	chr5	74677016	74677016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattttggcacggacacatCggttgtttagctgccaaaac	9	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	74677016	74677016	C	T	SNP	COL4A3BP	ENST00000380494	human	ensembl	69_37n	-1	known	missense	c.2012	p.R671Q	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd	-	no_errors	COL4A3BP	HGNC	ENSG00000113163	106	0	0	99	35	25.93	-	-	-	T	74677016	C	T	74677016	3	4	275	1	0	0	0	0	1	0	0	0	3722	884	31	1	254	1	COL4A3BP	5	74677016	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1810552	74677016	106238244	1677	27364										
POLK	0	genome.wustl.edu	37	chr5	74892346	74892346	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagaagatgaatgagaatTtggaaatatcagagaattca	10	2	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	74892346	74892346	T	G	SNP	POLK	ENST00000241436	human	ensembl	69_37n	1	known	missense	c.1828	p.L610V	0.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008	89	0	0	59	42	41.58	-	-	-	G	74892346	T	G	74892346	3	3	275	1	0	0	0	0	1	0	0	0	12278	1838	64	5	1874	5	POLK	5	74892346	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	215330	74892346	106022914	1678	27365										
POC5	0	genome.wustl.edu	37	chr5	75008689	75008689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttcctacctgaagattcGaagagacagaactgcctcga	8	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	75008689	75008689	G	A	SNP	POC5	ENST00000428202	human	ensembl	69_37n	-1	known	missense	c.74	p.S25L	1.000	NULL	NULL	-	no_errors	POC5	HGNC	ENSG00000152359	83	0	0	43	12	21.82	-	-	-	A	75008689	G	A	75008689	3	1	275	1	0	0	0	0	1	0	0	0	12251	1059	37	1	1710	1	POC5	5	75008689	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	116343	75008689	105906571	1679	27366										
SV2C	0	genome.wustl.edu	37	chr5	75596599	75596599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgaatttaaaaactgctCgttttttcacaacaagacgg	7	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	75596599	75596599	C	T	SNP	SV2C	ENST00000502798	human	ensembl	69_37n	1	known	missense	c.1682	p.S561L	0.996	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2C	HGNC	ENSG00000122012	236	0	0	199	31	13.48	-	-	-	T	75596599	C	T	75596599	3	4	275	1	0	0	0	0	1	0	0	0	15510	893	31	1	1720	1	SV2C	5	75596599	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	587910	75596599	105318661	1680	27367										
IQGAP2	0	genome.wustl.edu	37	chr5	75927789	75927789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgcaaatgacataatccCggagtgtgctgacaaatact	8	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	75927789	75927789	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	missense	c.1718	p.P573L	0.126	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	427	0	0	319	40	11.14	-	-	-	T	75927789	C	T	75927789	3	4	275	1	0	0	0	0	1	0	0	0	7869	652	23	1	1776	1	IQGAP2	5	75927789	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	331190	75927789	104987471	1681	27368										
IQGAP2	0	genome.wustl.edu	37	chr5	75969815	75969815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccaaagtactgaagaattCgatccatgagaaattccccg	8	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	75969815	75969815	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	missense	c.3248	p.S1083L	0.998	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	531	1	0.19	402	57	12.39	-	-	-	T	75969815	C	T	75969815	3	4	275	1	0	0	0	0	1	0	0	0	7869	893	31	1	3350	1	IQGAP2	5	75969815	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42026	75969815	104945445	1682	27369										
IQGAP2	0	genome.wustl.edu	37	chr5	75973155	75973155	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatttatatttcaattgaaGaaatcatcagcacacactca	3	9	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	75973155	75973155	G	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	nonsense	c.3640	p.E1214*	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	170	0	0	153	17	10	-	-	-	T	75973155	G	T	75973155	4	4	275	1	0	0	0	0	0	1	0	0	7869	943	33	2	3750	2	IQGAP2	5	75973155	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3340	75973155	104942105	1683	27370										
F2RL1	0	genome.wustl.edu	37	chr5	76128740	76128740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgtgggtctttcttttccGaactaagaagaagcaccctg	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	76128740	76128740	G	A	SNP	F2RL1	ENST00000296677	human	ensembl	69_37n	1	known	missense	c.308	p.R103Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2RL1	HGNC	ENSG00000164251	130	0	0	124	21	14.38	-	-	-	A	76128740	G	A	76128740	3	1	275	1	0	0	0	0	1	0	0	0	5381	1058	37	1	314	1	F2RL1	5	76128740	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155585	76128740	104786520	1684	27371										
CRHBP	0	genome.wustl.edu	37	chr5	76251688	76251688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacagaccccaacctctttCgtaagtgttctcagtcaaaa	6	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	76251688	76251688	C	T	SNP	CRHBP	ENST00000274368	human	ensembl	69_37n	1	known	missense	c.544	p.P182S	1.000	pfam_CRF-bd,superfamily_CUB,pirsf_CRF-bd	pfam_CRF-bd,superfamily_CUB,pirsf_CRF-bd	-	no_errors	CRHBP	HGNC	ENSG00000145708	97	0	0	54	15	21.43	-	-	-	T	76251688	C	T	76251688	3	4	275	1	0	0	0	0	1	0	0	0	3900	898	31	1	558	1	CRHBP	5	76251688	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122948	76251688	104663572	1685	27372										
PDE8B	0	genome.wustl.edu	37	chr5	76621421	76621421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggcttctggtgggcctgcGacagagctggttatagatgc	15	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	76621421	76621421	G	A	SNP	PDE8B	ENST00000264917	human	ensembl	69_37n	1	known	missense	c.457	p.D153N	1.000	pfam_Sig_transdc_resp-reg_receiver,superfamily_CheY-like_superfamily	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,prints_PDEase,pfscan_PAS,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231	169	0	0	133	28	17.39	-	-	-	A	76621421	G	A	76621421	3	1	275	1	0	0	0	0	1	0	0	0	11727	1058	37	1	467	1	PDE8B	5	76621421	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	369733	76621421	104293839	1686	27373										
AP3B1	0	genome.wustl.edu	37	chr5	77471610	77471610	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcagaacatacatacctTtctttgaattgacatagttg	6	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	77471610	77471610	T	G	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.1093	p.K365Q	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	471	0	0	312	52	14.29	-	-	-	G	77471610	T	G	77471610	3	3	275	1	0	0	0	0	1	0	0	0	745	1850	64	5	2263	5	AP3B1	5	77471610	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	850189	77471610	103443650	1687	27374										
DMGDH	0	genome.wustl.edu	37	chr5	78340260	78340260	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcacggagcacaggcagTtctcgtttcaaagctttcac	10	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78340260	78340260	T	C	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	silent	c.861	p.E287	0.998	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	162	0	0	143	21	12.65	-	-	-	C	78340260	T	C	78340260	2	2	275	1	0	0	0	0	0	0	0	1	4617	1722	60	5		5	DMGDH	5	78340260	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	868650	78340260	102575000	1688	27375										
BHMT2	0	genome.wustl.edu	37	chr5	78376542	78376542	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgctgctgcctgtgacctCgccagggaagtggctggcaa	14	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78376542	78376542	C	T	SNP	BHMT2	ENST00000255192	human	ensembl	69_37n	1	known	silent	c.291	p.L97	0.025	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840	586	0	0	441	158	26.25	-	-	-	T	78376542	C	T	78376542	2	4	275	1	0	0	0	0	0	0	0	1	1431	871	31	1		1	BHMT2	5	78376542	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36282	78376542	102538718	1689	27376										
JMY	0	genome.wustl.edu	37	chr5	78533274	78533274	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaaccttcgggcatgtgGactgtgctgtttgggggcgc	18	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78533274	78533274	G	A	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	nonsense	c.801	p.W267*	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	46	0	0	18	6	25	-	-	-	A	78533274	G	A	78533274	4	1	275	1	0	0	0	0	0	1	0	0	8011	1183	41	2	803	2	JMY	5	78533274	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	156732	78533274	102381986	1690	27377										
JMY	0	genome.wustl.edu	37	chr5	78573890	78573890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagaacttgccatgctacGaagacagcagatcaaggtat	11	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78573890	78573890	G	A	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	missense	c.1190	p.R397Q	0.993	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	158	0	0	109	13	10.57	-	-	-	A	78573890	G	A	78573890	3	1	275	1	0	0	0	0	1	0	0	0	8011	1058	37	1	1196	1	JMY	5	78573890	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40616	78573890	102341370	1691	27378										
JMY	0	genome.wustl.edu	37	chr5	78586970	78586970	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagctgtgtatgatcgaatgCgagctgatcagaagaaattt	11	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78586970	78586970	C	T	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	nonsense	c.1375	p.R459*	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	259	0	0	156	60	27.52	-	-	-	T	78586970	C	T	78586970	4	4	275	1	0	0	0	0	0	1	0	0	8011	760	27	1	1389	1	JMY	5	78586970	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13080	78586970	102328290	1692	27379										
JMY	0	genome.wustl.edu	37	chr5	78596095	78596095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatcttgaagtgtgaagaGttactattgacagcgcaact	10	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	78596095	78596095	G	T	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	missense	c.1647	p.E549D	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	211	0	0	162	45	21.74	-	-	-	T	78596095	G	T	78596095	3	4	275	1	0	0	0	0	1	0	0	0	8011	1020	36	4	1665	4	JMY	5	78596095	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9125	78596095	102319165	1693	27380										
CMYA5	0	genome.wustl.edu	37	chr5	79024863	79024863	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaaccaattcaagtagatCttctactccttgggcttcag	8	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79024863	79024863	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.275	p.S92F	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	809	0	0	516	185	26.32	-	-	-	T	79024863	C	T	79024863	3	4	275	1	0	0	0	0	1	0	0	0	3620	913	32	2	281	2	CMYA5	5	79024863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	428768	79024863	101890397	1694	27381										
CMYA5	0	genome.wustl.edu	37	chr5	79027509	79027509	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagagaatttgagtgcgattCtccaatatgtttaacatcac	7	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79027509	79027509	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.2921	p.S974Y	0.878	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	275	0	0	125	59	32.07	-	-	-	A	79027509	C	A	79027509	3	1	275	1	0	0	0	0	1	0	0	0	3620	913	32	2	2927	2	CMYA5	5	79027509	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2646	79027509	101887751	1695	27382										
CMYA5	0	genome.wustl.edu	37	chr5	79032324	79032324	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatatctctttaggtcattCtttgggtgaaactcaatcat	7	7	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79032324	79032324	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.7736	p.S2579Y	0.514	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	368	0	0	197	30	13.22	-	-	-	A	79032324	C	A	79032324	3	1	275	1	0	0	0	0	1	0	0	0	3620	913	32	2	7742	2	CMYA5	5	79032324	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4815	79032324	101882936	1696	27383										
CMYA5	0	genome.wustl.edu	37	chr5	79033484	79033484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcctttatttcttcaatcGatcaggaagaaagtgaacaa	8	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79033484	79033484	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.8896	p.D2966N	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	86	0	0	32	12	27.27	-	-	-	A	79033484	G	A	79033484	3	1	275	1	0	0	0	0	1	0	0	0	3620	1058	37	1	8902	1	CMYA5	5	79033484	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1160	79033484	101881776	1697	27384										
CMYA5	0	genome.wustl.edu	37	chr5	79033885	79033885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcccagtaagttcagtggaAagtgcactagaacatgaata	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79033885	79033885	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.9297	p.E3099D	0.036	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	86	0	0	69	12	14.81	-	-	-	C	79033885	A	C	79033885	3	2	275	1	0	0	0	0	1	0	0	0	3620	11	1	5	9303	5	CMYA5	5	79033885	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	401	79033885	101881375	1698	27385										
CMYA5	0	genome.wustl.edu	37	chr5	79034305	79034305	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaacaggaatatattttgaGaagtacatactcaaagatga	9	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79034305	79034305	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.9717	p.E3239	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	248	0	0	161	29	15.26	-	-	-	A	79034305	G	A	79034305	2	1	275	1	0	0	0	0	0	0	0	1	3620	933	33	2		2	CMYA5	5	79034305	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	420	79034305	101880955	1699	27386										
CMYA5	0	genome.wustl.edu	37	chr5	79034765	79034765	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggtgcaactcatgttcaaGaaacatcactagaagaacct	7	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79034765	79034765	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	nonsense	c.10177	p.E3393*	0.980	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	240	0	0	150	30	16.67	-	-	-	T	79034765	G	T	79034765	4	4	275	1	0	0	0	0	0	1	0	0	3620	943	33	2	10183	2	CMYA5	5	79034765	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	460	79034765	101880495	1700	27387										
CMYA5	0	genome.wustl.edu	37	chr5	79034948	79034948	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaagatgtcttatctcaaGgaaaggaatcctttgagcac	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79034948	79034948	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	nonsense	c.10360	p.G3454*	0.978	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	378	0	0	247	37	13.03	-	-	-	T	79034948	G	T	79034948	4	4	275	1	0	0	0	0	0	1	0	0	3620	1001	35	4	10366	4	CMYA5	5	79034948	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	183	79034948	101880312	1701	27388										
THBS4	0	genome.wustl.edu	37	chr5	79335985	79335985	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccccgccctgaatgatctCtatgtgatttccaccttcaa	6	14	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79335985	79335985	C	A	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	silent	c.174	p.L58	0.944	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	110	0	0	91	29	24.17	-	-	-	A	79335985	C	A	79335985	2	1	275	1	0	0	0	0	0	0	0	1	15951	900	32	2		2	THBS4	5	79335985	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	301037	79335985	101579275	1702	27389										
ZFYVE16	0	genome.wustl.edu	37	chr5	79733801	79733801	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccattcaaagagaatgatCttttgaaacaggaaaaatgt	7	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79733801	79733801	C	A	SNP	ZFYVE16	ENST00000338008	human	ensembl	69_37n	1	known	missense	c.1297	p.L433I	0.332	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319	39	0	0	39	5	11.36	-	-	-	A	79733801	C	A	79733801	3	1	275	1	0	0	0	0	1	0	0	0	17760	913	32	2	1303	2	ZFYVE16	5	79733801	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397816	79733801	101181459	1703	27390										
ZFYVE16	0	genome.wustl.edu	37	chr5	79741089	79741089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattgattctaggactatgTtccaaagaacagaagagagt	9	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79741089	79741089	T	C	SNP	ZFYVE16	ENST00000507548	human	ensembl	69_37n	1	known	missense	c.10	p.F4L	0.910	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE16	HGNC	ENSG00000039319	293	0	0	248	38	13.24	-	-	-	C	79741089	T	C	79741089	3	2	275	1	0	0	0	0	1	0	0	0	17760	1731	60	5	2607	5	ZFYVE16	5	79741089	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	7288	79741089	101174171	1704	27391										
ANKRD34B	0	genome.wustl.edu	37	chr5	79854754	79854754	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgatttgcccccaagtttCttttttgaactatacttctt	5	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79854754	79854754	C	A	SNP	ANKRD34B	ENST00000338682	human	ensembl	69_37n	-1	known	missense	c.1085	p.R362I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34B	HGNC	ENSG00000189127	78	0	0	39	8	17.02	-	-	-	A	79854754	C	A	79854754	3	1	275	1	0	0	0	0	1	0	0	0	662	913	32	2	463	2	ANKRD34B	5	79854754	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	113665	79854754	101060506	1705	27392										
ANKRD34B	0	genome.wustl.edu	37	chr5	79855613	79855613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgtcctgtatgttgggatCggcattgttctctaacaggt	11	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	79855613	79855613	C	T	SNP	ANKRD34B	ENST00000338682	human	ensembl	69_37n	-1	known	missense	c.226	p.D76N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34B	HGNC	ENSG00000189127	127	0	0	85	16	15.84	-	-	-	T	79855613	C	T	79855613	3	4	275	1	0	0	0	0	1	0	0	0	662	884	31	1	1322	1	ANKRD34B	5	79855613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	859	79855613	101059647	1706	27393										
RASGRF2	0	genome.wustl.edu	37	chr5	80521576	80521576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcactaaaaattgaacctcGactccctgcttgaagatctg	7	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	80521576	80521576	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	missense	c.3701	p.R1234Q	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	100	0	0	83	13	13.54	-	-	-	A	80521576	G	A	80521576	3	1	275	1	0	0	0	0	1	0	0	0	13156	1058	37	1	3807	1	RASGRF2	5	80521576	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	665963	80521576	100393684	1707	27394										
SSBP2	0	genome.wustl.edu	37	chr5	80769559	80769559	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctcttggaggagtcattCtctgcattggcccacccata	8	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	80769559	80769559	C	A	SNP	SSBP2	ENST00000320672	human	ensembl	69_37n	-1	known	missense	c.530	p.R177I	1.000	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP2	HGNC	ENSG00000145687	291	0	0	176	68	27.87	-	-	-	A	80769559	C	A	80769559	3	1	275	1	0	0	0	0	1	0	0	0	15271	913	32	2	595	2	SSBP2	5	80769559	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	247983	80769559	100145701	1708	27395										
XRCC4	0	genome.wustl.edu	37	chr5	82406995	82406995	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagagtcttgttatttcttCtttgagaaaaacctgaaaga	7	5	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	82406995	82406995	C	A	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.288	p.F96L	1.000	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	314	0	0	206	32	13.45	-	-	-	A	82406995	C	A	82406995	3	1	275	1	0	0	0	0	1	0	0	0	17552	912	32	2	294	2	XRCC4	5	82406995	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1637436	82406995	98508265	1709	27396										
XRCC4	0	genome.wustl.edu	37	chr5	82499476	82499476	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatcagaagtttgcataaTaaattattaaatgcagctca	5	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	82499476	82499476	T	A	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.588	p.N196K	0.986	pfam_DNA_ds_break_repair_XRCC4	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	188	0	0	142	49	25.65	-	-	-	A	82499476	T	A	82499476	3	1	275	1	0	0	0	0	1	0	0	0	17552	1403	49	5	602	5	XRCC4	5	82499476	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	92481	82499476	98415784	1710	27397										
VCAN	0	genome.wustl.edu	37	chr5	82835239	82835239	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcaacagaacaaacaatCtttgattcacagacatttac	4	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	82835239	82835239	C	A	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	silent	c.6417	p.I2139	0.012	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	84	0	0	84	15	15.15	-	-	-	A	82835239	C	A	82835239	2	1	275	1	0	0	0	0	0	0	0	1	17235	903	32	2		2	VCAN	5	82835239	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	335763	82835239	98080021	1711	27398										
GPR98	0	genome.wustl.edu	37	chr5	89979952	89979952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgagccagaaaggtccGaatctgtctttatcgaacta	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	89979952	89979952	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.6214	p.E2072K	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	109	0	0	88	32	26.67	-	-	-	A	89979952	G	A	89979952	3	1	275	1	0	0	0	0	1	0	0	0	6772	1059	37	1	6324	1	GPR98	5	89979952	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7144713	89979952	90935308	1712	27399										
GPR98	0	genome.wustl.edu	37	chr5	90004654	90004654	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgtaccagagctagaaGaatatttcctggtgaattta	9	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	90004654	90004654	G	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	nonsense	c.8752	p.E2918*	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	490	0	0	300	39	11.5	-	-	-	T	90004654	G	T	90004654	4	4	275	1	0	0	0	0	0	1	0	0	6772	943	33	2	8906	2	GPR98	5	90004654	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24702	90004654	90910606	1713	27400										
GPR98	0	genome.wustl.edu	37	chr5	90087051	90087051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgtggctgttgggcttcGaatatcatcggatcataaag	12	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	90087051	90087051	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.14405	p.R4802Q	0.110	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	148	1	0.67	61	23	27.38	-	-	-	A	90087051	G	A	90087051	3	1	275	1	0	0	0	0	1	0	0	0	6772	1058	37	1	14683	1	GPR98	5	90087051	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	82397	90087051	90828209	1714	27401										
POU5F2	0	genome.wustl.edu	37	chr5	93076473	93076473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcatcattggttggtcgaCtgcccatcttgctgcggtta	11	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	93076473	93076473	C	T	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.797	p.S266N	0.436	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	147	0	0	57	26	30.95	-	-	-	T	93076473	C	T	93076473	3	4	275	1	0	0	0	0	1	0	0	0	12356	565	20	4	193	4	POU5F2	5	93076473	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2989422	93076473	87838787	1715	27402										
FAM172A	0	genome.wustl.edu	37	chr5	93120105	93120105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacctctctcatccattctCgaatcgttttgccagcttct	4	15	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	93120105	93120105	C	T	SNP	FAM172A	ENST00000395965	human	ensembl	69_37n	-1	known	missense	c.1007	p.R336Q	1.000	NULL	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391	445	0	0	290	59	16.91	-	-	-	T	93120105	C	T	93120105	3	4	275	1	0	0	0	0	1	0	0	0	5532	884	31	1	255	1	FAM172A	5	93120105	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43632	93120105	87795155	1716	27403										
FAM81B	0	genome.wustl.edu	37	chr5	94772574	94772574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatttaaagatggtccaggGggattatcgccacgaaatga	12	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	94772574	94772574	G	A	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.857	p.G286E	1.000	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	180	0	0	178	22	10.95	-	-	-	A	94772574	G	A	94772574	3	1	275	1	0	0	0	0	1	0	0	0	5674	1232	43	4	883	4	FAM81B	5	94772574	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1652469	94772574	86142686	1717	27404										
TTC37	0	genome.wustl.edu	37	chr5	94852676	94852676	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgttgctgcctgtttctgCtagatgttgtgcttggcgat	12	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	94852676	94852676	C	A	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.2380	p.A794S	0.002	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	145	0	0	111	22	16.54	-	-	-	A	94852676	C	A	94852676	3	1	275	1	0	0	0	0	1	0	0	0	16802	797	28	4	2402	4	TTC37	5	94852676	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80102	94852676	86062584	1718	27405										
SPATA9	0	genome.wustl.edu	37	chr5	95018318	95018318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattgctttctggatcccctCgactaagacaaaaagaggtt	9	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	95018318	95018318	C	T	SNP	SPATA9	ENST00000274432	human	ensembl	69_37n	-1	known	missense	c.64	p.E22K	0.976	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757	258	0	0	174	57	24.68	-	-	-	T	95018318	C	T	95018318	3	4	275	1	0	0	0	0	1	0	0	0	15107	893	31	1	716	1	SPATA9	5	95018318	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165642	95018318	85896942	1719	27406										
SPATA9	0	genome.wustl.edu	37	chr5	95018514	95018514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacttcttccagaaaagttCttcaacacctgcccacatat	3	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	95018514	95018514	C	A	SNP	SPATA9	ENST00000274432	human	ensembl	69_37n	-1	known	missense	c.45	p.K15N	1.000	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757	311	0	0	262	39	12.91	-	-	-	A	95018514	C	A	95018514	3	1	275	1	0	0	0	0	1	0	0	0	15107	912	32	2	739	2	SPATA9	5	95018514	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	196	95018514	85896746	1720	27407										
ELL2	0	genome.wustl.edu	37	chr5	95234462	95234462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcgtcaggtgagatattCgggcttttttattcattaaa	9	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	95234462	95234462	C	T	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.1007	p.R336Q	1.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	115	0	0	76	22	22.45	-	-	-	T	95234462	C	T	95234462	3	4	275	1	0	0	0	0	1	0	0	0	5100	884	31	1	935	1	ELL2	5	95234462	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	215948	95234462	85680798	1721	27408										
ERAP2	0	genome.wustl.edu	37	chr5	96215570	96215570	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtagccactaatggggaaCgatttccttggcaggagcta	12	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	96215570	96215570	C	T	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	nonsense	c.181	p.R61*	0.789	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	245	0	0	146	42	22.34	-	-	-	T	96215570	C	T	96215570	4	4	275	1	0	0	0	0	0	1	0	0	5241	528	19	1	183	1	ERAP2	5	96215570	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	981108	96215570	84699690	1722	27409										
LNPEP	0	genome.wustl.edu	37	chr5	96364151	96364151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggcaaccttccggcttCgttgtgtccaggaggctttg	13	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	96364151	96364151	C	T	SNP	LNPEP	ENST00000231368	human	ensembl	69_37n	1	known	missense	c.2992	p.R998C	0.922	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441	220	0	0	202	33	14.04	-	-	-	T	96364151	C	T	96364151	3	4	275	1	0	0	0	0	1	0	0	0	8920	884	31	1	3062	1	LNPEP	5	96364151	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148581	96364151	84551109	1723	27410										
CHD1	0	genome.wustl.edu	37	chr5	98218811	98218811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgtttcttttgcccaattCgatgggctctagcctgtgcc	9	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	98218811	98218811	C	T	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.2699	p.R900Q	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	94	0	0	59	25	29.76	-	-	-	T	98218811	C	T	98218811	3	4	275	1	0	0	0	0	1	0	0	0	3352	884	31	1	2505	1	CHD1	5	98218811	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1854660	98218811	82696449	1724	27411										
CHD1	0	genome.wustl.edu	37	chr5	98224927	98224927	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctgagggctttgtaattCctagttaaaatccatcttaa	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	98224927	98224927	C	A	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.2196	p.R732S	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	252	0	0	115	44	27.67	-	-	-	A	98224927	C	A	98224927	3	1	275	1	0	0	0	0	1	0	0	0	3352	854	30	2	3020	2	CHD1	5	98224927	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6116	98224927	82690333	1725	27412										
CHD1	0	genome.wustl.edu	37	chr5	98229251	98229251	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacagaagggagtcatcattCtttaatcggtgtgcttcatc	9	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	98229251	98229251	C	A	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.1860	p.K620N	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	102	0	0	58	11	15.94	-	-	-	A	98229251	C	A	98229251	3	1	275	1	0	0	0	0	1	0	0	0	3352	912	32	2	3364	2	CHD1	5	98229251	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4324	98229251	82686009	1726	27413										
CHD1	0	genome.wustl.edu	37	chr5	98234419	98234419	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtagatcatctgtaagttCttgctggcaattataatatt	7	5	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	98234419	98234419	C	T	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.1135	p.E379K	1.000	superfamily_Chromodomain-like	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	113	0	0	63	19	23.17	-	-	-	T	98234419	C	T	98234419	3	4	275	1	0	0	0	0	1	0	0	0	3352	922	32	2	4109	2	CHD1	5	98234419	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5168	98234419	82680841	1727	27414										
ST8SIA4	0	genome.wustl.edu	37	chr5	100231434	100231434	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattgaagagccagcctttcGaatgattttatcagagctat	9	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	100231434	100231434	G	A	SNP	ST8SIA4	ENST00000231461	human	ensembl	69_37n	-1	known	nonsense	c.169	p.R57*	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	189	0	0	126	22	14.86	-	-	-	A	100231434	G	A	100231434	4	1	275	1	0	0	0	0	0	1	0	0	15325	1066	37	1	930	1	ST8SIA4	5	100231434	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1997015	100231434	80683826	1728	27415										
PAM	0	genome.wustl.edu	37	chr5	102203071	102203071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagattttgcattggatattCgcatgcctggggttacacct	10	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	102203071	102203071	C	T	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	missense	c.184	p.R62C	1.000	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	367	0	0	116	50	30.12	-	-	-	T	102203071	C	T	102203071	3	4	275	1	0	0	0	0	1	0	0	0	11485	884	31	1	190	1	PAM	5	102203071	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1971637	102203071	78712189	1729	27416										
PAM	0	genome.wustl.edu	37	chr5	102343295	102343295	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttaaaactgacaccaaaGaatttgtgagagagattaag	9	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	102343295	102343295	G	T	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	nonsense	c.2149	p.E717*	1.000	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	240	1	0.41	183	30	14.08	-	-	-	T	102343295	G	T	102343295	4	4	275	1	0	0	0	0	0	1	0	0	11485	943	33	2	2223	2	PAM	5	102343295	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	140224	102343295	78571965	1730	27417										
GIN1	0	genome.wustl.edu	37	chr5	102444353	102444353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaatgatattcaccagttCgtttgtaatatgcaatctgt	7	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	102444353	102444353	C	T	SNP	GIN1	ENST00000399004	human	ensembl	69_37n	-1	known	missense	c.59	p.R20Q	1.000	NULL	pfam_Integrase_cat-core,pfam_Znf_H2C2_histone_UAS-bd,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	GIN1	HGNC	ENSG00000145723	514	1	0.19	341	75	18.03	-	-	-	T	102444353	C	T	102444353	3	4	275	1	0	0	0	0	1	0	0	0	6438	884	31	1	1537	1	GIN1	5	102444353	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101058	102444353	78470907	1731	27418										
PPIP5K2	0	genome.wustl.edu	37	chr5	102508931	102508931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctctggttagaaaaattCgctcagaccttcagaggaca	8	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	102508931	102508931	C	T	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	missense	c.2359	p.R787C	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	207	0	0	117	15	11.19	-	-	-	T	102508931	C	T	102508931	3	4	275	1	0	0	0	0	1	0	0	0	12410	884	31	1	2433	1	PPIP5K2	5	102508931	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64578	102508931	78406329	1732	27419										
EFNA5	0	genome.wustl.edu	37	chr5	106722976	106722976	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctactttgtcgttaacatcGaaaacacgatcatgaacacc	5	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	106722976	106722976	G	A	SNP	EFNA5	ENST00000333274	human	ensembl	69_37n	-1	known	silent	c.525	p.F175	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA5	HGNC	ENSG00000184349	229	0	0	208	31	12.97	-	-	-	A	106722976	G	A	106722976	2	1	275	1	0	0	0	0	0	0	0	1	4989	1049	37	1		1	EFNA5	5	106722976	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4214045	106722976	74192284	1733	27420										
MAN2A1	0	genome.wustl.edu	37	chr5	109155379	109155379	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttttaaagatctcttttCgagcacatataccgccattg	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	109155379	109155379	C	T	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	nonsense	c.2119	p.R707*	0.986	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	79	0	0	40	15	27.27	-	-	-	T	109155379	C	T	109155379	4	4	275	1	0	0	0	0	0	1	0	0	9285	876	31	1	2173	1	MAN2A1	5	109155379	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2432403	109155379	71759881	1734	27421										
STARD4	0	genome.wustl.edu	37	chr5	110836564	110836564	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctattttactccctagagtTtagcacttgcaaaaaatgtt	6	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	110836564	110836564	T	G	SNP	STARD4	ENST00000510346	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STARD4	HGNC	ENSG00000164211	22	0	0	16	5	23.81	-	-	-	G	110836564	T	G	110836564	1	3	275	0	1	0	0	0	0	0	0	0	15350	1856	64	5		5	STARD4	5	110836564	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1681185	110836564	70078696	1735	27422										
APC	0	genome.wustl.edu	37	chr5	112102990	112102990	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtatcaagccgttctggaGagtgcagtcctgttcctatg	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112102990	112102990	G	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	nonsense	c.325	p.E109*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	250	0	0	185	22	10.63	-	-	-	T	112102990	G	T	112102990	4	4	275	1	0	0	0	0	0	1	0	0	764	943	33	2	335	2	APC	5	112102990	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1266426	112102990	68812270	1736	27423										
APC	0	genome.wustl.edu	37	chr5	112154954	112154954	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaatccgagtccttcatCttttggaacagatacgcgct	9	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112154954	112154954	C	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.1225	p.L409I	1.000	superfamily_ARM-type_fold	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	120	0	0	51	18	26.09	-	-	-	A	112154954	C	A	112154954	3	1	275	1	0	0	0	0	1	0	0	0	764	913	32	2	1259	2	APC	5	112154954	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	51964	112154954	68760306	1737	27424										
APC	0	genome.wustl.edu	37	chr5	112175388	112175388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctccctccaaaagtggtgCtcagacacccaaaagtccac	6	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112175388	112175388	C	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.4097	p.A1366V	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	234	0	0	185	65	26	-	-	-	T	112175388	C	T	112175388	3	4	275	1	0	0	0	0	1	0	0	0	764	797	28	4	4155	4	APC	5	112175388	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20434	112175388	68739872	1738	27425										
APC	0	genome.wustl.edu	37	chr5	112175490	112175490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatagttttgagagtcgttCgattgccagctccgttcaga	11	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112175490	112175490	C	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.4199	p.S1400L	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	342	1	0.29	313	55	14.95	-	-	-	T	112175490	C	T	112175490	3	4	275	1	0	0	0	0	1	0	0	0	764	893	31	1	4257	1	APC	5	112175490	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102	112175490	68739770	1739	27426										
APC	0	genome.wustl.edu	37	chr5	112176706	112176706	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaatgctgagagagttttCtcagacaacaaagattcaaa	7	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112176706	112176706	C	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.5415	p.F1805L	0.998	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	128	0	0	122	16	11.59	-	-	-	A	112176706	C	A	112176706	3	1	275	1	0	0	0	0	1	0	0	0	764	912	32	2	5473	2	APC	5	112176706	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1216	112176706	68738554	1740	27427										
APC	0	genome.wustl.edu	37	chr5	112177959	112177959	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttcaagcaaacatgccttCaatctctcgaggcaggacaa	7	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112177959	112177959	C	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	nonsense	c.6668	p.S2223*	1.000	pfam_APC_basic_dom	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	119	0	0	89	26	22.61	-	-	-	A	112177959	C	A	112177959	4	1	275	1	0	0	0	0	0	1	0	0	764	838	29	2	6726	2	APC	5	112177959	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1253	112177959	68737301	1741	27428										
MCC	0	genome.wustl.edu	37	chr5	112364657	112364657	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccgctttagatcattcacGaactctgcagattgctgatg	9	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	112364657	112364657	G	A	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	silent	c.2283	p.F761	0.187	pfam_USH1C-bd_PDZ_domain	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	329	0	0	212	31	12.76	-	-	-	A	112364657	G	A	112364657	2	1	275	1	0	0	0	0	0	0	0	1	9444	1049	37	1		1	MCC	5	112364657	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186698	112364657	68550603	1742	27429										
TRIM36	0	genome.wustl.edu	37	chr5	114499229	114499229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatacctggtctgttaattCggtcaattttatccatacta	5	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	114499229	114499229	C	T	SNP	TRIM36	ENST00000282369	human	ensembl	69_37n	-1	known	missense	c.284	p.R95Q	1.000	smart_Znf_RING	pfam_Znf_B-box,pfam_Fibronectin_type3,pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM36	HGNC	ENSG00000152503	108	0	0	54	29	34.94	-	-	-	T	114499229	C	T	114499229	3	4	275	1	0	0	0	0	1	0	0	0	16606	884	31	1	1938	1	TRIM36	5	114499229	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2134572	114499229	66416031	1743	27430										
CCDC112	0	genome.wustl.edu	37	chr5	114603583	114603583	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgattatctcatactcttCtctgtattccttgtctccag	4	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	114603583	114603583	C	A	SNP	CCDC112	ENST00000379611	human	ensembl	69_37n	-1	known	missense	c.1580	p.R527I	0.026	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221	293	0	0	192	79	29.15	-	-	-	A	114603583	C	A	114603583	3	1	275	1	0	0	0	0	1	0	0	0	2774	913	32	2	13	2	CCDC112	5	114603583	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	104354	114603583	66311677	1744	27431										
CDO1	0	genome.wustl.edu	37	chr5	115152113	115152113	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcgtggggagctggctgCgcgcgcgtctcactgctggg	17	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	115152113	115152113	C	T	SNP	CDO1	ENST00000504613	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.030	-	-	-	no_errors	CDO1	HGNC	ENSG00000129596	47	0	0	25	4	13.79	-	-	-	T	115152113	C	T	115152113	1	4	275	0	1	0	0	0	0	0	0	0	3198	783	27	1		1	CDO1	5	115152113	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	548530	115152113	65763147	1745	27432										
AQPEP	0	genome.wustl.edu	37	chr5	115329550	115329550	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttaatcctaaactcccaaGagtaagtatgtttactaagt	5	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	115329550	115329550	G	T	SNP	AQPEP	ENST00000357872	human	ensembl	69_37n	1	known	missense	c.1373	p.R458I	0.014	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LVRN	Clone_based_vega_gene	ENSG00000172901	234	0	0	128	26	16.88	-	-	-	T	115329550	G	T	115329550	3	4	275	1	0	0	0	0	1	0	0	0	836	956	33	2	1395	2	AQPEP	5	115329550	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	177437	115329550	65585710	1746	27433										
AQPEP	0	genome.wustl.edu	37	chr5	115361749	115361749	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaacttacagacaataaaGaatgaaaatctgaaaaacaa	5	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	115361749	115361749	G	T	SNP	AQPEP	ENST00000357872	human	ensembl	69_37n	1	known	missense	c.2907	p.K969N	0.957	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LVRN	Clone_based_vega_gene	ENSG00000172901	229	1	0.43	190	23	10.8	-	-	-	T	115361749	G	T	115361749	3	4	275	1	0	0	0	0	1	0	0	0	836	933	33	2	2985	2	AQPEP	5	115361749	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32199	115361749	65553511	1747	27434										
COMMD10	0	genome.wustl.edu	37	chr5	115428378	115428378	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgaaaagttccggcagaGaattctggctccctgtaagg	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	115428378	115428378	G	T	SNP	COMMD10	ENST00000274458	human	ensembl	69_37n	1	known	missense	c.380	p.R127I	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD10	HGNC	ENSG00000145781	133	0	0	99	15	13.16	-	-	-	T	115428378	G	T	115428378	3	4	275	1	0	0	0	0	1	0	0	0	3745	942	33	2	394	2	COMMD10	5	115428378	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	66629	115428378	65486882	1748	27435										
SEMA6A	0	genome.wustl.edu	37	chr5	115803401	115803401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catacccctcttgagccgtcGaatctgatgtggttgtgctg	11	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	115803401	115803401	G	A	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.1823	p.S608L	0.961	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	534	0	0	276	96	25.6	-	-	-	A	115803401	G	A	115803401	3	1	275	1	0	0	0	0	1	0	0	0	14127	1059	37	1	1328	1	SEMA6A	5	115803401	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	375023	115803401	65111859	1749	27436										
SNCAIP	0	genome.wustl.edu	37	chr5	121758959	121758959	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggtgacttcagaaaaaaGaattttgggcttatgcacaa	9	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	121758959	121758959	G	T	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.668	p.R223I	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	113	0	0	66	28	29.79	-	-	-	T	121758959	G	T	121758959	3	4	275	1	0	0	0	0	1	0	0	0	14930	942	33	2	537	2	SNCAIP	5	121758959	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5955558	121758959	59156301	1750	27437										
ZNF608	0	genome.wustl.edu	37	chr5	123982772	123982772	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtacttctcatactgctgtCtataggcagggctggtggcc	12	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	123982772	123982772	C	A	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.3305	p.R1102I	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	98	0	0	90	15	14.29	-	-	-	A	123982772	C	A	123982772	3	1	275	1	0	0	0	0	1	0	0	0	18130	913	32	2	1257	2	ZNF608	5	123982772	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2223813	123982772	56932488	1751	27438										
ZNF608	0	genome.wustl.edu	37	chr5	124080354	124080354	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattagcatccttagaagttTtactccttttcacttttgat	4	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	124080354	124080354	T	G	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.329	p.K110T	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	170	0	0	162	63	28	-	-	-	G	124080354	T	G	124080354	3	3	275	1	0	0	0	0	1	0	0	0	18130	1841	64	5	4245	5	ZNF608	5	124080354	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	97582	124080354	56834906	1752	27439										
ADAMTS19	0	genome.wustl.edu	37	chr5	128994347	128994347	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattagggtctcttgcaaGagaagatcattgtggtgtat	11	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	128994347	128994347	G	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.2324	p.R775I	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	571	2	0.35	268	123	31.46	-	-	-	T	128994347	G	T	128994347	3	4	275	1	0	0	0	0	1	0	0	0	264	942	33	2	2382	2	ADAMTS19	5	128994347	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4913993	128994347	51920913	1753	27440										
RAPGEF6	0	genome.wustl.edu	37	chr5	130846055	130846055	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctttttcaagacattctcGaacaagatctcgcccctgca	5	13	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	130846055	130846055	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	nonsense	c.757	p.R253*	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	192	1	0.52	109	50	31.45	-	-	-	A	130846055	G	A	130846055	4	1	275	1	0	0	0	0	0	1	0	0	13131	1066	37	1	4618	1	RAPGEF6	5	130846055	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1851708	130846055	50069205	1754	27441										
FNIP1	0	genome.wustl.edu	37	chr5	131034637	131034637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttagggcatcaactattCgattatatgccaaacttctc	5	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	131034637	131034637	C	T	SNP	FNIP1	ENST00000510461	human	ensembl	69_37n	-1	known	missense	c.1175	p.R392Q	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	415	0	0	192	22	10.28	-	-	-	T	131034637	C	T	131034637	3	4	275	1	0	0	0	0	1	0	0	0	6021	884	31	1	2357	1	FNIP1	5	131034637	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	188582	131034637	49880623	1755	27442										
ACSL6	0	genome.wustl.edu	37	chr5	131323806	131323806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctctttcagggcttcttCgaatgggtccatgaggatga	11	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	131323806	131323806	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	missense	c.766	p.E256K	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	269	0	0	221	34	13.28	-	-	-	T	131323806	C	T	131323806	3	4	275	1	0	0	0	0	1	0	0	0	181	893	31	1	1544	1	ACSL6	5	131323806	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	289169	131323806	49591454	1756	27443										
SLC22A5	0	genome.wustl.edu	37	chr5	131721046	131721046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattcttggcaagtcagttCgtataatattctctacgtta	6	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	131721046	131721046	C	T	SNP	SLC22A5	ENST00000435065	human	ensembl	69_37n	1	known	missense	c.751	p.R251C	0.985	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A5	HGNC	ENSG00000197375	372	1	0.27	270	104	27.59	-	-	-	T	131721046	C	T	131721046	3	4	275	1	0	0	0	0	1	0	0	0	14546	884	31	1	693	1	SLC22A5	5	131721046	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397240	131721046	49194214	1757	27444										
RAD50	0	genome.wustl.edu	37	chr5	131923370	131923370	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataatagtgaactggaagaGaaaatggaaaaggtttgtgg	14	1	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	131923370	131923370	G	T	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	missense	c.873	p.E291D	1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	309	0	0	265	71	21.13	-	-	-	T	131923370	G	T	131923370	3	4	275	1	0	0	0	0	1	0	0	0	13067	933	33	2	895	2	RAD50	5	131923370	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	202324	131923370	48991890	1758	27445										
RAD50	0	genome.wustl.edu	37	chr5	131953803	131953803	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacatagacaatataaaaaGaaatcataatttggcattag	6	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	131953803	131953803	G	T	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	missense	c.3206	p.R1069I	1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	197	0	0	105	37	26.06	-	-	-	T	131953803	G	T	131953803	3	4	275	1	0	0	0	0	1	0	0	0	13067	942	33	2	3288	2	RAD50	5	131953803	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30433	131953803	48961457	1759	27446										
KIF3A	0	genome.wustl.edu	37	chr5	132038600	132038600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttcctcaagttctctgcGaagttgctctgctcttttcc	6	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132038600	132038600	G	A	SNP	KIF3A	ENST00000378735	human	ensembl	69_37n	-1	known	missense	c.1552	p.R518C	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	443	2	0.45	270	97	26.43	-	-	-	A	132038600	G	A	132038600	3	1	275	1	0	0	0	0	1	0	0	0	8352	1058	37	1	584	1	KIF3A	5	132038600	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84797	132038600	48876660	1760	27447										
GDF9	0	genome.wustl.edu	37	chr5	132199883	132199883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtacagggggtgaagagccGaacagtgttgtagaggtgac	18	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132199883	132199883	G	A	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.343	p.R115W	0.947	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	383	0	0	233	77	24.84	-	-	-	A	132199883	G	A	132199883	3	1	275	1	0	0	0	0	1	0	0	0	6371	1057	37	1	1029	1	GDF9	5	132199883	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161283	132199883	48715377	1761	27448										
AFF4	0	genome.wustl.edu	37	chr5	132227941	132227941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttttgctgctgccactcGtctccttgttgctgttactg	9	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132227941	132227941	G	A	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	missense	c.2552	p.T851M	0.562	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	182	0	0	146	59	28.5	-	-	-	A	132227941	G	A	132227941	3	1	275	1	0	0	0	0	1	0	0	0	359	1145	40	1	975	1	AFF4	5	132227941	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28058	132227941	48687319	1762	27449										
HSPA4	0	genome.wustl.edu	37	chr5	132412476	132412476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaatccgtgcattattacGactctctcaggagtgtgaga	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132412476	132412476	G	A	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	missense	c.794	p.R265Q	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	407	0	0	367	47	11.35	-	-	-	A	132412476	G	A	132412476	3	1	275	1	0	0	0	0	1	0	0	0	7465	1058	37	1	820	1	HSPA4	5	132412476	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184535	132412476	48502784	1763	27450										
FSTL4	0	genome.wustl.edu	37	chr5	132939586	132939586	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacacccacatccgggcctCtgctggttcctgggtccatc	9	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132939586	132939586	C	A	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.89	p.R30I	0.815	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	146	1	0.68	99	28	22.05	-	-	-	A	132939586	C	A	132939586	3	1	275	1	0	0	0	0	1	0	0	0	6128	913	32	2	2499	2	FSTL4	5	132939586	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	527110	132939586	47975674	1764	27451										
FSTL4	0	genome.wustl.edu	37	chr5	132939615	132939615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgggtccatccatcccagCgcagccggcagggaggctcc	13	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	132939615	132939615	C	T	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	silent	c.60	p.A20	0.001	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	160	0	0	96	16	14.16	-	-	-	T	132939615	C	T	132939615	2	4	275	1	0	0	0	0	0	0	0	1	6128	755	27	1		1	FSTL4	5	132939615	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29	132939615	47975645	1765	27452										
SEC24A	0	genome.wustl.edu	37	chr5	134028330	134028330	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagaacttattagtaaacTtaaatgaaagtaaagaggta	8	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	134028330	134028330	T	G	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.1762	p.L588V	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	90	0	0	57	14	19.72	-	-	-	G	134028330	T	G	134028330	3	3	275	1	0	0	0	0	1	0	0	0	14082	1606	56	5	1808	5	SEC24A	5	134028330	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1088715	134028330	46886930	1766	27453										
DDX46	0	genome.wustl.edu	37	chr5	134102657	134102657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgagagcgaagaagatctcGaagtagagacaggagacgct	14	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	134102657	134102657	G	A	SNP	DDX46	ENST00000452510	human	ensembl	69_37n	1	known	missense	c.257	p.R86Q	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833	181	0	0	138	18	11.54	-	-	-	A	134102657	G	A	134102657	3	1	275	1	0	0	0	0	1	0	0	0	4395	1058	37	1	267	1	DDX46	5	134102657	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74327	134102657	46812603	1767	27454										
DDX46	0	genome.wustl.edu	37	chr5	134147520	134147520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacaagattcagatgatgaGgatgctgcagttgatgtaag	12	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	134147520	134147520	G	T	SNP	DDX46	ENST00000452510	human	ensembl	69_37n	1	known	missense	c.2421	p.E807D	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833	283	0	0	146	56	27.72	-	-	-	T	134147520	G	T	134147520	3	4	275	1	0	0	0	0	1	0	0	0	4395	991	35	4	2491	4	DDX46	5	134147520	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44863	134147520	46767740	1768	27455										
TGFBI	0	genome.wustl.edu	37	chr5	135390500	135390500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtatctgtaccatggacagAccctggaaactctgggcggc	12	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	135390500	135390500	A	G	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.1360	p.T454A	0.992	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	190	0	0	150	24	13.71	-	-	-	G	135390500	A	G	135390500	3	3	275	1	0	0	0	0	1	0	0	0	15915	275	10	5	1398	5	TGFBI	5	135390500	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1242980	135390500	45524760	1769	27456										
TRPC7	0	genome.wustl.edu	37	chr5	135567147	135567147	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaacgtagccaatgttctcGatgaatttgtggtcgtattt	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	135567147	135567147	G	A	SNP	TRPC7	ENST00000502753	human	ensembl	69_37n	-1	novel	nonsense	c.1768	p.R590*	0.987	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPC7	HGNC	ENSG00000069018	364	1	0.27	215	69	24.3	-	-	-	A	135567147	G	A	135567147	4	1	275	1	0	0	0	0	0	1	0	0	16680	1048	37	1	673	1	TRPC7	5	135567147	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	176647	135567147	45348113	1770	27457										
TRPC7	0	genome.wustl.edu	37	chr5	135601912	135601912	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagtgacttgcttacctaaGacccacttcataatgagcat	7	10	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	135601912	135601912	G	T	SNP	TRPC7	ENST00000502753	human	ensembl	69_37n	-1	novel	missense	c.1174	p.L392I	0.970	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPC7	HGNC	ENSG00000069018	330	0	0	230	89	27.9	-	-	-	T	135601912	G	T	135601912	3	4	275	1	0	0	0	0	1	0	0	0	16680	929	33	2	1279	2	TRPC7	5	135601912	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34765	135601912	45313348	1771	27458										
SPOCK1	0	genome.wustl.edu	37	chr5	136315029	136315029	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccttactcaccacagctcAcagcaccctgtttcctggag	8	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	136315029	136315029	A	G	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	missense	c.1121	p.V374A	0.991	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	369	0	0	197	63	24.05	-	-	-	G	136315029	A	G	136315029	3	3	275	1	0	0	0	0	1	0	0	0	15170	159	6	5	206	5	SPOCK1	5	136315029	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	713117	136315029	44600231	1772	27459										
PKD2L2	0	genome.wustl.edu	37	chr5	137243571	137243571	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttattacaataatataatTgctattaccatcttttttgc	2	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	137243571	137243571	T	C	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	1	known	silent	c.1116	p.I372	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	212	0	0	131	47	26.4	-	-	-	C	137243571	T	C	137243571	2	2	275	1	0	0	0	0	0	0	0	1	12042	1800	63	5		5	PKD2L2	5	137243571	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	928542	137243571	43671689	1773	27460										
FAM13B	0	genome.wustl.edu	37	chr5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaactaaaggatgatcttcGaattctgaattaaaacaaaa	6	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	137289150	137289150	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	nonsense	c.1657	p.R553*	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	348	0	0	238	164	40.8	-	-	-	A	137289150	G	A	137289150	4	1	275	1	0	0	0	0	0	1	0	0	5493	1066	37	1	1126	1	FAM13B	5	137289150	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45579	137289150	43626110	1774	27461										
WNT8A	0	genome.wustl.edu	37	chr5	137423580	137423580	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactgtagcatgggtgacttCgaaaactgtggctgtgatgg	14	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	137423580	137423580	C	T	SNP	WNT8A	ENST00000361560	human	ensembl	69_37n	1	known	silent	c.327	p.F109	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492	300	0	0	199	53	21.03	-	-	-	T	137423580	C	T	137423580	2	4	275	1	0	0	0	0	0	0	0	1	17493	883	31	1		1	WNT8A	5	137423580	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134430	137423580	43491680	1775	27462										
BRD8	0	genome.wustl.edu	37	chr5	137498853	137498853	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggctgctggggatggagtCtgccagtgtgtgtgactgca	18	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	137498853	137498853	C	T	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	missense	c.2053	p.D685N	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	432	0	0	391	70	15.18	-	-	-	T	137498853	C	T	137498853	3	4	275	1	0	0	0	0	1	0	0	0	1514	913	32	2	1770	2	BRD8	5	137498853	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75273	137498853	43416407	1776	27463										
REEP2	0	genome.wustl.edu	37	chr5	137780194	137780194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgtgctctaccgcaagttCgtgcacccaacgctgtccaa	9	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	137780194	137780194	C	T	SNP	REEP2	ENST00000512126	human	ensembl	69_37n	1	putative	missense	c.386	p.S129L	1.000	pfam_TB2_DP1_HVA22	pfam_TB2_DP1_HVA22	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	REEP2	HGNC	ENSG00000132563	140	0	0	69	22	24.18	-	-	-	T	137780194	C	T	137780194	3	4	275	1	0	0	0	0	1	0	0	0	13288	883	31	1	287	1	REEP2	5	137780194	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	281341	137780194	43135066	1777	27464										
CTNNA1	0	genome.wustl.edu	37	chr5	138119052	138119052	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctgctgtagaagatgttCgaaaacaaggtaggtcatta	12	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	138119052	138119052	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	nonsense	c.292	p.R98*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	193	0	0	121	14	10.37	-	-	-	T	138119052	C	T	138119052	4	4	275	1	0	0	0	0	0	1	0	0	4044	876	31	1	298	1	CTNNA1	5	138119052	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	338858	138119052	42796208	1778	27465										
PSD2	0	genome.wustl.edu	37	chr5	139213319	139213319	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagatgtcctgtcagcaattCattgccaacttggaccagct	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	139213319	139213319	C	A	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	missense	c.1302	p.F434L	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	355	0	0	202	91	31.06	-	-	-	A	139213319	C	A	139213319	3	1	275	1	0	0	0	0	1	0	0	0	12727	825	29	2	1328	2	PSD2	5	139213319	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1094267	139213319	41701941	1779	27466										
PFDN1	0	genome.wustl.edu	37	chr5	139625621	139625621	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagcttccttaacgcttcGctccaggtaggactttttct	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	139625621	139625621	G	A	SNP	PFDN1	ENST00000261813	human	ensembl	69_37n	-1	known	nonsense	c.307	p.R103*	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN1	HGNC	ENSG00000113068	302	0	0	178	24	11.82	-	-	-	A	139625621	G	A	139625621	4	1	275	1	0	0	0	0	0	1	0	0	11829	1095	38	1	65	1	PFDN1	5	139625621	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	412302	139625621	41289639	1780	27467										
SLC4A9	0	genome.wustl.edu	37	chr5	139752360	139752360	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatcagccaaaggctccaGaaatcaacatttctgtgaat	7	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	139752360	139752360	G	T	SNP	SLC4A9	ENST00000230993	human	ensembl	69_37n	1	known	nonsense	c.2929	p.E977*	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	215	0	0	125	43	25.6	-	-	-	T	139752360	G	T	139752360	4	4	275	1	0	0	0	0	0	1	0	0	14749	943	33	2	2939	2	SLC4A9	5	139752360	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	126739	139752360	41162900	1781	27468										
ANKHD1	0	genome.wustl.edu	37	chr5	139876702	139876702	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggttctaatgggacaaattCtcttgaacttcagaaagtat	8	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	139876702	139876702	C	A	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.2843	p.S948Y	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	99	0	0	71	15	17.44	-	-	-	A	139876702	C	A	139876702	3	1	275	1	0	0	0	0	1	0	0	0	628	913	32	2	3007	2	ANKHD1	5	139876702	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	124342	139876702	41038558	1782	27469										
ZMAT2	0	genome.wustl.edu	37	chr5	140080490	140080490	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacggaagagagagaaaaGaaagatggtgggtgctaact	14	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140080490	140080490	G	T	SNP	ZMAT2	ENST00000274712	human	ensembl	69_37n	1	known	missense	c.105	p.K35N	1.000	NULL	pfam_Znf_C2H2_jaz,pfam_Znf_U1-C,smart_Znf_U1	-	no_errors	ZMAT2	HGNC	ENSG00000146007	420	0	0	219	70	24.05	-	-	-	T	140080490	G	T	140080490	3	4	275	1	0	0	0	0	1	0	0	0	17788	933	33	2	111	2	ZMAT2	5	140080490	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	203788	140080490	40834770	1783	27470										
PCDHA1	0	genome.wustl.edu	37	chr5	140165977	140165977	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcggccagctccactactcGatcccggaggaagccaaaca	10	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140165977	140165977	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.102	p.S34	0.738	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	66	0	0	23	5	17.86	-	-	-	A	140165977	G	A	140165977	2	1	275	1	0	0	0	0	0	0	0	1	11592	1045	37	1		1	PCDHA1	5	140165977	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	85487	140165977	40749283	1784	27471										
PCDHA7	0	genome.wustl.edu	37	chr5	140214929	140214929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcacacaagatcccagtcGaggctgtcgataaaggcttc	11	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140214929	140214929	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.961	p.E321K	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	214	0	0	118	22	15.71	-	-	-	A	140214929	G	A	140214929	3	1	275	1	0	0	0	0	1	0	0	0	11602	1059	37	1	963	1	PCDHA7	5	140214929	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48952	140214929	40700331	1785	27472										
PCDHA8	0	genome.wustl.edu	37	chr5	140221358	140221358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccagaatgccagactctcGgtttccgctagagggcgcgt	12	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140221358	140221358	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.452	p.R151Q	0.932	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	73	0	0	51	6	10.53	-	-	-	A	140221358	G	A	140221358	3	1	275	1	0	0	0	0	1	0	0	0	11603	1116	39	1	454	1	PCDHA8	5	140221358	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6429	140221358	40693902	1786	27473										
PCDHA9	0	genome.wustl.edu	37	chr5	140230162	140230162	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccccgaggtgacgctggtGgatgtcaacgtgtacctgat	15	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140230162	140230162	G	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	silent	c.2082	p.V694	0.371	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	49	0	0	19	10	34.48	-	-	-	T	140230162	G	T	140230162	2	4	275	1	0	0	0	0	0	0	0	1	11604	1335	47	4		4	PCDHA9	5	140230162	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8804	140230162	40685098	1787	27474										
PCDHA10	0	genome.wustl.edu	37	chr5	140236122	140236122	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgatgcggatgttggagaGaacgcattgcttacttacaa	11	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140236122	140236122	G	T	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.489	p.E163D	0.305	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	50	0	0	17	7	29.17	-	-	-	T	140236122	G	T	140236122	3	4	275	1	0	0	0	0	1	0	0	0	11593	933	33	2	491	2	PCDHA10	5	140236122	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5960	140236122	40679138	1788	27475										
PCDHA10	0	genome.wustl.edu	37	chr5	140236699	140236699	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattgtcacttctctgtctCtcccagtgaaagaagatgct	8	10	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140236699	140236699	C	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1066	p.L356I	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	81	0	0	39	17	30.36	-	-	-	A	140236699	C	A	140236699	3	1	275	1	0	0	0	0	1	0	0	0	11593	913	32	2	1068	2	PCDHA10	5	140236699	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	577	140236699	40678561	1789	27476										
PCDHA13	0	genome.wustl.edu	37	chr5	140261962	140261962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctccactactccgtccccGaggaagcaaaacacggcacc	8	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140261962	140261962	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.109	p.E37K	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	62	0	0	22	6	20.69	-	-	-	A	140261962	G	A	140261962	3	1	275	1	0	0	0	0	1	0	0	0	11596	1059	37	1	111	1	PCDHA13	5	140261962	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25263	140261962	40653298	1790	27477										
PCDHA13	0	genome.wustl.edu	37	chr5	140262124	140262124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttgtgaattctcggatcGaccgcgaggagctgtgtggg	16	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140262124	140262124	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.271	p.D91N	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	94	0	0	29	15	34.09	-	-	-	A	140262124	G	A	140262124	3	1	275	1	0	0	0	0	1	0	0	0	11596	1058	37	1	273	1	PCDHA13	5	140262124	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	162	140262124	40653136	1791	27478										
PCDHA13	0	genome.wustl.edu	37	chr5	140263651	140263651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgcgcgcggtggacgccGattcgggctacaatgcgtgg	18	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140263651	140263651	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1798	p.D600N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	61	0	0	23	9	27.27	-	-	-	A	140263651	G	A	140263651	3	1	275	1	0	0	0	0	1	0	0	0	11596	1058	37	1	1800	1	PCDHA13	5	140263651	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1527	140263651	40651609	1792	27479										
PCDHAC1	0	genome.wustl.edu	37	chr5	140306991	140306991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtcagcactttcgcctgGacatgggatcgcgggttgac	13	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140306991	140306991	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.514	p.D172N	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	65	0	0	25	10	28.57	-	-	-	A	140306991	G	A	140306991	3	1	275	1	0	0	0	0	1	0	0	0	11605	1174	41	2	516	2	PCDHAC1	5	140306991	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43340	140306991	40608269	1793	27480										
PCDHAC1	0	genome.wustl.edu	37	chr5	140307480	140307480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaggtgactgacgtgaacGatcatgcccccgaactggac	13	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140307480	140307480	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.1003	p.D335N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	187	0	0	96	27	21.77	-	-	-	A	140307480	G	A	140307480	3	1	275	1	0	0	0	0	1	0	0	0	11605	1058	37	1	1005	1	PCDHAC1	5	140307480	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	489	140307480	40607780	1794	27481										
PCDHAC1	0	genome.wustl.edu	37	chr5	140308192	140308192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccagtggaaattgtgccccGctctgccaggactggacact	11	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140308192	140308192	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.1715	p.R572H	0.970	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	164	0	0	78	33	29.73	-	-	-	A	140308192	G	A	140308192	3	1	275	1	0	0	0	0	1	0	0	0	11605	1087	38	1	1717	1	PCDHAC1	5	140308192	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	712	140308192	40607068	1795	27482										
PCDHAC2	0	genome.wustl.edu	37	chr5	140348138	140348138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccttcgagatggtgcctcGaactgcccctgctggctacc	11	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140348138	140348138	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	missense	c.1787	p.R596Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	150	0	0	60	21	25.93	-	-	-	A	140348138	G	A	140348138	3	1	275	1	0	0	0	0	1	0	0	0	11606	1058	37	1	1789	1	PCDHAC2	5	140348138	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39946	140348138	40567122	1796	27483										
PCDHB1	0	genome.wustl.edu	37	chr5	140431478	140431478	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaaggagccgcttttaaaGattccggagagcaccccttt	9	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140431478	140431478	G	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.423	p.K141N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	63	0	0	34	9	20.93	-	-	-	T	140431478	G	T	140431478	3	4	275	1	0	0	0	0	1	0	0	0	11607	933	33	2	425	2	PCDHB1	5	140431478	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83340	140431478	40483782	1797	27484										
PCDHB11	0	genome.wustl.edu	37	chr5	140580089	140580089	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttgagcaggctttttatGaggtgaagattcgggagaat	13	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140580089	140580089	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.742	p.E248K	0.989	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	146	0	0	100	14	12.28	-	-	-	A	140580089	G	A	140580089	3	1	275	1	0	0	0	0	1	0	0	0	11609	1291	45	2	744	2	PCDHB11	5	140580089	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	148611	140580089	40335171	1798	27485										
PCDHB13	0	genome.wustl.edu	37	chr5	140595018	140595018	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaatatgaccgtgctgatCgccgatgtcaatgacaacgc	9	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140595018	140595018	C	T	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	silent	c.1323	p.I441	0.001	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	183	0	0	81	42	33.87	-	-	-	T	140595018	C	T	140595018	2	4	275	1	0	0	0	0	0	0	0	1	11611	874	31	1		1	PCDHB13	5	140595018	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14929	140595018	40320242	1799	27486										
PCDHB13	0	genome.wustl.edu	37	chr5	140595806	140595806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttcgctcttcctcttttCggtgctcctgttcgtggcgg	11	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140595806	140595806	C	T	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	missense	c.2111	p.S704L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	146	0	0	53	10	15.87	-	-	-	T	140595806	C	T	140595806	3	4	275	1	0	0	0	0	1	0	0	0	11611	893	31	1	2113	1	PCDHB13	5	140595806	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	788	140595806	40319454	1800	27487										
PCDHB15	0	genome.wustl.edu	37	chr5	140626663	140626663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcacctccctggtctccaTtaacacggacaacggccacc	6	19	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140626663	140626663	T	C	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	1	known	missense	c.1517	p.I506T	0.933	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	111	0	0	57	12	17.39	-	-	-	C	140626663	T	C	140626663	3	2	275	1	0	0	0	0	1	0	0	0	11613	1493	52	5	1519	5	PCDHB15	5	140626663	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	30857	140626663	40288597	1801	27488										
SLC25A2	0	genome.wustl.edu	37	chr5	140683204	140683204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgaagaggaccgagttttCggcgacgtaggccataagtg	14	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140683204	140683204	C	T	SNP	SLC25A2	ENST00000239451	human	ensembl	69_37n	-1	known	missense	c.229	p.E77K	0.568	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329	87	0	0	37	13	26	-	-	-	T	140683204	C	T	140683204	3	4	275	1	0	0	0	0	1	0	0	0	14571	893	31	1	680	1	SLC25A2	5	140683204	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56541	140683204	40232056	1802	27489										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725166	140725166	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgctgagatccttcgactaCgagcaatttagagacttaaa	9	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140725166	140725166	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.1566	p.Y522	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	79	0	0	56	8	12.5	-	-	-	T	140725166	C	T	140725166	2	4	275	1	0	0	0	0	0	0	0	1	11628	547	19	1		1	PCDHGA3	5	140725166	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41962	140725166	40190094	1803	27490										
PCDHGA8	0	genome.wustl.edu	37	chr5	140774123	140774123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggagctggcgccccgctcCgcagagcgtggctacctggt	16	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140774123	140774123	C	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	69_37n	1	known	silent	c.1743	p.S581	0.221	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	38	0	0	23	4	14.81	-	-	-	T	140774123	C	T	140774123	2	4	275	1	0	0	0	0	0	0	0	1	11633	639	23	1		1	PCDHGA8	5	140774123	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48957	140774123	40141137	1804	27491										
PCDHGB6	0	genome.wustl.edu	37	chr5	140788897	140788897	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacacgggatctggatttCggaggaaatggagaagtcag	14	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140788897	140788897	C	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	silent	c.1128	p.F376	0.010	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	54	0	0	17	10	37.04	-	-	-	T	140788897	C	T	140788897	2	4	275	1	0	0	0	0	0	0	0	1	11640	883	31	1		1	PCDHGB6	5	140788897	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14774	140788897	40126363	1805	27492										
PCDHGB7	0	genome.wustl.edu	37	chr5	140797923	140797923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgatattagtatgaattCgctgagcaaataccaactaa	6	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140797923	140797923	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.497	p.S166L	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	88	0	0	43	7	14	-	-	-	T	140797923	C	T	140797923	3	4	275	1	0	0	0	0	1	0	0	0	11641	893	31	1	499	1	PCDHGB7	5	140797923	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9026	140797923	40117337	1806	27493										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801641	140801641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaagtaatgtattcatttCggaacatggaaagcaaggct	12	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140801641	140801641	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.847	p.R283W	0.006	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	48	0	0	26	8	23.53	-	-	-	T	140801641	C	T	140801641	3	4	275	1	0	0	0	0	1	0	0	0	11625	875	31	1	849	1	PCDHGA11	5	140801641	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3718	140801641	40113619	1807	27494										
PCDHGA11	0	genome.wustl.edu	37	chr5	140802357	140802357	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctatgccctacaatccttCgactatgagcagtttcgaga	7	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140802357	140802357	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	silent	c.1563	p.F521	0.344	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	75	0	0	52	8	13.33	-	-	-	T	140802357	C	T	140802357	2	4	275	1	0	0	0	0	0	0	0	1	11625	883	31	1		1	PCDHGA11	5	140802357	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	716	140802357	40112903	1808	27495										
PCDHGC4	0	genome.wustl.edu	37	chr5	140865237	140865237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagatgtggggagcaattCgattagcagctataggctga	14	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	140865237	140865237	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	missense	c.497	p.S166L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	92	0	0	36	17	32.08	-	-	-	T	140865237	C	T	140865237	3	4	275	1	0	0	0	0	1	0	0	0	11643	893	31	1	499	1	PCDHGC4	5	140865237	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	62880	140865237	40050023	1809	27496										
FCHSD1	0	genome.wustl.edu	37	chr5	141020961	141020961	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgagggtggaaataagggCgattccagcttttggctgtg	17	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	141020961	141020961	C	T	SNP	FCHSD1	ENST00000518160	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948	56	0	0	28	12	30	-	-	-	T	141020961	C	T	141020961	1	4	275	0	1	0	0	0	0	0	0	0	5835	783	27	1		1	FCHSD1	5	141020961	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155724	141020961	39894299	1810	27497										
FCHSD1	0	genome.wustl.edu	37	chr5	141024448	141024448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacccattcgtcagcatctCcctcctctatgacctccagc	5	18	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	141024448	141024448	C	T	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	missense	c.1502	p.G501E	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	68	0	0	56	8	12.31	-	-	-	T	141024448	C	T	141024448	3	4	275	1	0	0	0	0	1	0	0	0	5835	855	30	2	594	2	FCHSD1	5	141024448	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3487	141024448	39890812	1811	27498										
FCHSD1	0	genome.wustl.edu	37	chr5	141026716	141026716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcacctgatcagtccctgCtggctgaaactgctgaggtg	11	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	141026716	141026716	C	A	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	missense	c.910	p.A304S	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	292	0	0	174	32	15.53	-	-	-	A	141026716	C	A	141026716	3	1	275	1	0	0	0	0	1	0	0	0	5835	797	28	4	1206	4	FCHSD1	5	141026716	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2268	141026716	39888544	1812	27499										
ARAP3	0	genome.wustl.edu	37	chr5	141039455	141039455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaacagcagagccaagttcCgcgtgcacatctggtttaga	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	141039455	141039455	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.3158	p.R1053Q	0.998	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	185	0	0	108	36	25	-	-	-	T	141039455	C	T	141039455	3	4	275	1	0	0	0	0	1	0	0	0	842	652	23	1	1524	1	ARAP3	5	141039455	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12739	141039455	39875805	1813	27500										
ARHGAP26	0	genome.wustl.edu	37	chr5	142500707	142500707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatcctaatagaaaaccacGaaaaggtaatatgtaattga	7	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	142500707	142500707	G	A	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.1693	p.E565K	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	301	0	0	184	80	30.3	-	-	-	A	142500707	G	A	142500707	3	1	275	1	0	0	0	0	1	0	0	0	877	1059	37	1	1763	1	ARHGAP26	5	142500707	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1461252	142500707	38414553	1814	27501										
NR3C1	0	genome.wustl.edu	37	chr5	142689725	142689725	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgggcagttttttcttcGaattttatcgatgatgcaat	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	142689725	142689725	G	A	SNP	NR3C1	ENST00000231509	human	ensembl	69_37n	-1	known	nonsense	c.1408	p.R470*	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580	295	0	0	160	40	19.8	-	-	-	A	142689725	G	A	142689725	4	1	275	1	0	0	0	0	0	1	0	0	10703	1066	37	1	1004	1	NR3C1	5	142689725	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	189018	142689725	38225535	1815	27502										
RBM27	0	genome.wustl.edu	37	chr5	145641282	145641282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttagtcacctctcacagcaGcaccatcacctgccacagca	5	18	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	145641282	145641282	G	A	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	silent	c.2103	p.Q701	0.987	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	52	0	0	40	16	28.57	-	-	-	A	145641282	G	A	145641282	2	1	275	1	0	0	0	0	0	0	0	1	13210	962	34	4		4	RBM27	5	145641282	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2951557	145641282	35273978	1816	27503										
TCERG1	0	genome.wustl.edu	37	chr5	145843320	145843320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtaatggtacctccgtttCgtgttccccttcctggcatg	9	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	145843320	145843320	C	T	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	missense	c.1099	p.R367C	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	320	0	0	285	36	11.21	-	-	-	T	145843320	C	T	145843320	3	4	275	1	0	0	0	0	1	0	0	0	15780	884	31	1	1117	1	TCERG1	5	145843320	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	202038	145843320	35071940	1817	27504										
TCERG1	0	genome.wustl.edu	37	chr5	145882937	145882937	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actacctgttttaaaatacaGattaaatcggatttctttga	5	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	145882937	145882937	G	T	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	splice_site	c.2383-1	e17-1	1.000	-	-	-	no_errors	TCERG1	HGNC	ENSG00000113649	244	1	0.41	126	51	28.81	-	-	-	T	145882937	G	T	145882937	5	4	275	1	0	0	0	0	0	0	1	0	15780	956	33	2	2448	2	TCERG1	5	145882937	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39617	145882937	35032323	1818	27505										
GPR151	0	genome.wustl.edu	37	chr5	145894851	145894851	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccgggcctgcagccttcaGatgccatacccacagccaag	11	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	145894851	145894851	G	A	SNP	GPR151	ENST00000311104	human	ensembl	69_37n	-1	known	silent	c.826	p.L276	0.106	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR151	HGNC	ENSG00000173250	76	0	0	49	13	20.97	-	-	-	A	145894851	G	A	145894851	2	1	275	1	0	0	0	0	0	0	0	1	6707	933	33	2		2	GPR151	5	145894851	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11914	145894851	35020409	1819	27506										
PPP2R2B	0	genome.wustl.edu	37	chr5	146017813	146017813	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcccttcagttgctactcaCatttggtgtgcctgtcacac	7	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	146017813	146017813	C	A	SNP	PPP2R2B	ENST00000394414	human	ensembl	69_37n	-1	known	splice_site	c.988+1	e7+1	1.000	-	-	-	no_errors	PPP2R2B	HGNC	ENSG00000156475	129	0	0	85	31	26.5	-	-	-	A	146017813	C	A	146017813	5	1	275	1	0	0	0	0	0	0	1	0	12462	492	17	4	556	4	PPP2R2B	5	146017813	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122962	146017813	34897447	1820	27507										
JAKMIP2	0	genome.wustl.edu	37	chr5	147019299	147019299	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttaattgtcgaaatcttaGttcagattcttcagctgcta	7	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	147019299	147019299	G	A	SNP	JAKMIP2	ENST00000265272	human	ensembl	69_37n	-1	known	silent	c.1426	p.L476	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049	228	0	0	153	48	23.88	-	-	-	A	147019299	G	A	147019299	2	1	275	1	0	0	0	0	0	0	0	1	7995	1020	36	4		4	JAKMIP2	5	147019299	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1001486	147019299	33895961	1821	27508										
SCGB3A2	0	genome.wustl.edu	37	chr5	147261087	147261087	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggacaacattcttccctTtatggatccattaaagcttc	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	147261087	147261087	T	G	SNP	SCGB3A2	ENST00000296694	human	ensembl	69_37n	1	known	missense	c.134	p.F45C	0.000	pfam_Uteroglobin-like_superfam	pfam_Uteroglobin-like_superfam	-	no_errors	SCGB3A2	HGNC	ENSG00000164265	656	0	0	406	151	27.11	-	-	-	G	147261087	T	G	147261087	3	3	275	1	0	0	0	0	1	0	0	0	13989	1841	64	5	140	5	SCGB3A2	5	147261087	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	241788	147261087	33654173	1822	27509										
SPINK5	0	genome.wustl.edu	37	chr5	147503414	147503414	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggatctgtgtcgtgaatttCgaagcatgcagagaaatgga	13	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	147503414	147503414	C	T	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	nonsense	c.2557	p.R853*	1.000	smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	263	0	0	166	19	10.27	-	-	-	T	147503414	C	T	147503414	4	4	275	1	0	0	0	0	0	1	0	0	15153	876	31	1	2663	1	SPINK5	5	147503414	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	242327	147503414	33411846	1823	27510										
FBXO38	0	genome.wustl.edu	37	chr5	147803583	147803583	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaatgagatggaagacatCgtccaagaagatggagaggt	13	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	147803583	147803583	C	T	SNP	FBXO38	ENST00000340253	human	ensembl	69_37n	1	known	silent	c.1641	p.I547	0.997	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO38	HGNC	ENSG00000145868	217	0	0	198	49	19.6	-	-	-	T	147803583	C	T	147803583	2	4	275	1	0	0	0	0	0	0	0	1	5792	874	31	1		1	FBXO38	5	147803583	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	300169	147803583	33111677	1824	27511										
FBXO38	0	genome.wustl.edu	37	chr5	147820025	147820025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcttccctgaagccactcGaagtgaagaagacttaaaga	8	9	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	147820025	147820025	G	A	SNP	FBXO38	ENST00000340253	human	ensembl	69_37n	1	known	missense	c.3209	p.R1070Q	1.000	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO38	HGNC	ENSG00000145868	51	0	0	35	4	10.26	-	-	-	A	147820025	G	A	147820025	3	1	275	1	0	0	0	0	1	0	0	0	5792	1058	37	1	3283	1	FBXO38	5	147820025	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16442	147820025	33095235	1825	27512										
ABLIM3	0	genome.wustl.edu	37	chr5	148620248	148620248	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgtgctccagggcccgagaGtggccggagctctccatacc	14	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	148620248	148620248	G	T	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	missense	c.1214	p.S405I	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	87	0	0	35	5	12.5	-	-	-	T	148620248	G	T	148620248	3	4	275	1	0	0	0	0	1	0	0	0	96	1029	36	4	1264	4	ABLIM3	5	148620248	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	800223	148620248	32295012	1826	27513										
CSNK1A1	0	genome.wustl.edu	37	chr5	148930500	148930500	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccctccgacaatgaattCagccttggagccgctgctac	8	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	148930500	148930500	C	A	SNP	CSNK1A1	ENST00000515768	human	ensembl	69_37n	-1	known	nonsense	c.28	p.E10*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1	HGNC	ENSG00000113712	74	0	0	46	48	51.06	-	-	-	A	148930500	C	A	148930500	4	1	275	1	0	0	0	0	0	1	0	0	3982	835	29	2	1113	2	CSNK1A1	5	148930500	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	310252	148930500	31984760	1827	27514										
PDE6A	0	genome.wustl.edu	37	chr5	149275996	149275996	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattttaccagctccagttCtgttaggggtaagtcactga	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	149275996	149275996	C	A	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	nonsense	c.1543	p.E515*	0.994	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	258	0	0	166	23	12.17	-	-	-	A	149275996	C	A	149275996	4	1	275	1	0	0	0	0	0	1	0	0	11718	922	32	2	1083	2	PDE6A	5	149275996	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	345496	149275996	31639264	1828	27515										
SLC26A2	0	genome.wustl.edu	37	chr5	149360495	149360495	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcaaagacattggttaaaGaatcaacaggctgccatact	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	149360495	149360495	G	T	SNP	SLC26A2	ENST00000286298	human	ensembl	69_37n	1	known	nonsense	c.1339	p.E447*	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850	254	0	0	199	78	28.06	-	-	-	T	149360495	G	T	149360495	4	4	275	1	0	0	0	0	0	1	0	0	14606	943	33	2	1345	2	SLC26A2	5	149360495	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84499	149360495	31554765	1829	27516										
SLC26A2	0	genome.wustl.edu	37	chr5	149361126	149361126	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattgactgcagtgcaattcAatttttagatacagcaggga	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	149361126	149361126	A	C	SNP	SLC26A2	ENST00000286298	human	ensembl	69_37n	1	known	missense	c.1970	p.Q657P	0.727	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850	122	0	0	94	20	17.54	-	-	-	C	149361126	A	C	149361126	3	2	275	1	0	0	0	0	1	0	0	0	14606	130	5	5	1976	5	SLC26A2	5	149361126	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	631	149361126	31554134	1830	27517										
PDGFRB	0	genome.wustl.edu	37	chr5	149501461	149501461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accagagggaacgtagttatCgtaaggggccatgtagttgg	15	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	149501461	149501461	C	T	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.2326	p.D776N	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	202	0	0	84	34	28.81	-	-	-	T	149501461	C	T	149501461	3	4	275	1	0	0	0	0	1	0	0	0	11735	884	31	1	1026	1	PDGFRB	5	149501461	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	140335	149501461	31413799	1831	27518										
NDST1	0	genome.wustl.edu	37	chr5	149907581	149907581	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtgctgctggccaagacGcgctcgtctgagtccatccc	11	16	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	149907581	149907581	G	A	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	silent	c.729	p.T243	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	47	0	0	22	5	18.52	-	-	-	A	149907581	G	A	149907581	2	1	275	1	0	0	0	0	0	0	0	1	10327	1074	38	1		1	NDST1	5	149907581	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406120	149907581	31007679	1832	27519										
ZNF300	0	genome.wustl.edu	37	chr5	150276248	150276248	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaaaagcatcatatttatGgaatctctgtattgatatat	5	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	150276248	150276248	G	T	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.601	p.H201N	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	106	0	0	91	12	11.65	-	-	-	T	150276248	G	T	150276248	3	4	275	1	0	0	0	0	1	0	0	0	17927	1348	47	4	1265	4	ZNF300	5	150276248	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	368667	150276248	30639012	1833	27520										
ANXA6	0	genome.wustl.edu	37	chr5	150502564	150502564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatcgatgattgtgtcttCgtcagtccctgagtcaccaa	9	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	150502564	150502564	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	69_37n	-1	known	missense	c.1147	p.E383K	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043	290	1	0.34	159	79	33.19	-	-	-	T	150502564	C	T	150502564	3	4	275	1	0	0	0	0	1	0	0	0	721	893	31	1	918	1	ANXA6	5	150502564	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	226316	150502564	30412696	1834	27521										
SLC36A1	0	genome.wustl.edu	37	chr5	150856222	150856222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtacctgggcatggtcatCgtcaccatcctctacatcag	8	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	150856222	150856222	C	T	SNP	SLC36A1	ENST00000522185	human	ensembl	69_37n	1	known	missense	c.73	p.R25C	0.001	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC36A1	HGNC	ENSG00000123643	440	0	0	266	48	15.24	-	-	-	T	150856222	C	T	150856222	3	4	275	1	0	0	0	0	1	0	0	0	14682	874	31	1	924	1	SLC36A1	5	150856222	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	353658	150856222	30059038	1835	27522										
FAT2	0	genome.wustl.edu	37	chr5	150922149	150922149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcactgtcaatggcaaagaGctcatggacattgctaccag	9	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	150922149	150922149	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.8539	p.L2847F	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	208	0	0	159	25	13.51	-	-	-	A	150922149	G	A	150922149	3	1	275	1	0	0	0	0	1	0	0	0	5736	971	34	4	4570	4	FAT2	5	150922149	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	65927	150922149	29993111	1836	27523										
FAT2	0	genome.wustl.edu	37	chr5	150931082	150931082	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacagtcaagttatagttCgaccttctcctggtatcaag	7	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	150931082	150931082	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.4242	p.S1414	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	238	0	0	174	23	11.68	-	-	-	T	150931082	C	T	150931082	2	4	275	1	0	0	0	0	0	0	0	1	5736	871	31	1		1	FAT2	5	150931082	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8933	150931082	29984178	1837	27524										
GALNT10	0	genome.wustl.edu	37	chr5	153755973	153755973	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actggggatgtcatcacattCttggattcacactgtgaagc	10	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	153755973	153755973	C	A	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	1	known	missense	c.705	p.F235L	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	165	0	0	98	15	13.27	-	-	-	A	153755973	C	A	153755973	3	1	275	1	0	0	0	0	1	0	0	0	6258	912	32	2	723	2	GALNT10	5	153755973	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2824891	153755973	27159287	1838	27525										
GALNT10	0	genome.wustl.edu	37	chr5	153789119	153789119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaccttaagcgggtggccGaagtgtggatggatgagtac	16	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	153789119	153789119	G	A	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	1	known	missense	c.1183	p.E395K	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	164	0	0	107	24	18.32	-	-	-	A	153789119	G	A	153789119	3	1	275	1	0	0	0	0	1	0	0	0	6258	1059	37	1	1217	1	GALNT10	5	153789119	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	33146	153789119	27126141	1839	27526										
LARP1	0	genome.wustl.edu	37	chr5	154173460	154173460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacgaccaggatgagacatcGagtgtgaagagtgatggggc	16	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	154173460	154173460	G	A	SNP	LARP1	ENST00000518194	human	ensembl	69_37n	1	putative	missense	c.253	p.E85K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	LARP1	HGNC	ENSG00000155506	81	0	0	31	10	24.39	-	-	-	A	154173460	G	A	154173460	3	1	275	1	0	0	0	0	1	0	0	0	8682	1045	37	1	760	1	LARP1	5	154173460	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	384341	154173460	26741800	1840	27527										
LARP1	0	genome.wustl.edu	37	chr5	154173558	154173558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgcggccggggtggcactcGaagtacgtgaggcccctttg	16	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	154173558	154173558	G	A	SNP	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	missense	c.836	p.R279Q	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	70	0	0	33	10	23.26	-	-	-	A	154173558	G	A	154173558	3	1	275	1	0	0	0	0	1	0	0	0	8682	1058	37	1	858	1	LARP1	5	154173558	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98	154173558	26741702	1841	27528										
HAVCR2	0	genome.wustl.edu	37	chr5	156533812	156533812	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgtccaataattcacatCcctttcatcagtcctgagca	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	156533812	156533812	C	A	SNP	HAVCR2	ENST00000307851	human	ensembl	69_37n	-1	known	missense	c.220	p.D74Y	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	HAVCR2	HGNC	ENSG00000135077	153	0	0	122	36	22.78	-	-	-	A	156533812	C	A	156533812	3	1	275	1	0	0	0	0	1	0	0	0	7025	855	30	2	709	2	HAVCR2	5	156533812	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2360254	156533812	24381448	1842	27529										
ITK	0	genome.wustl.edu	37	chr5	156608078	156608078	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgaactttaaagtccgcttCtttgtgttaaccaaagccag	7	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	156608078	156608078	C	A	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.90	p.F30L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	194	0	0	141	16	10.19	-	-	-	A	156608078	C	A	156608078	3	1	275	1	0	0	0	0	1	0	0	0	7963	912	32	2	92	2	ITK	5	156608078	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	74266	156608078	24307182	1843	27530										
CYFIP2	0	genome.wustl.edu	37	chr5	156747679	156747679	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcgtcctacaggcaattCgaaagaccatctgtgactgg	10	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	156747679	156747679	C	T	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	nonsense	c.1540	p.R514*	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	72	0	0	54	17	23.94	-	-	-	T	156747679	C	T	156747679	4	4	275	1	0	0	0	0	0	1	0	0	4169	876	31	1	1594	1	CYFIP2	5	156747679	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	139601	156747679	24167581	1844	27531										
ADAM19	0	genome.wustl.edu	37	chr5	156991409	156991409	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaggtccaggatcagttCtcgcccctcagccattaccc	7	18	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	156991409	156991409	C	A	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	nonsense	c.229	p.E77*	0.989	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	149	0	0	123	23	15.75	-	-	-	A	156991409	C	A	156991409	4	1	275	1	0	0	0	0	0	1	0	0	240	922	32	2	2617	2	ADAM19	5	156991409	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	243730	156991409	23923851	1845	27532										
LSM11	0	genome.wustl.edu	37	chr5	157178487	157178487	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgcactttcaagggacttCggggcgtctgtacaggcttc	12	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	157178487	157178487	C	T	SNP	LSM11	ENST00000286307	human	ensembl	69_37n	1	known	missense	c.538	p.R180W	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM11	HGNC	ENSG00000155858	242	0	0	157	25	13.66	-	-	-	T	157178487	C	T	157178487	3	4	275	1	0	0	0	0	1	0	0	0	9118	875	31	1	544	1	LSM11	5	157178487	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	187078	157178487	23736773	1846	27533										
EBF1	0	genome.wustl.edu	37	chr5	158135025	158135025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtgctggtgcaggtgggaGgtggggaggtctggggtctg	24	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	158135025	158135025	G	T	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	missense	c.1706	p.P569H	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	247	0	0	251	54	17.65	-	-	-	T	158135025	G	T	158135025	3	4	275	1	0	0	0	0	1	0	0	0	4915	1000	35	4	77	4	EBF1	5	158135025	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	956538	158135025	22780235	1847	27534										
RNF145	0	genome.wustl.edu	37	chr5	158601156	158601156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaaggcgagaaggccatatAcctccactacctaaataaaa	6	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	158601156	158601156	A	G	SNP	RNF145	ENST00000274542	human	ensembl	69_37n	-1	known	missense	c.716	p.V239A	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860	137	0	0	96	47	32.41	-	-	-	G	158601156	A	G	158601156	3	3	275	1	0	0	0	0	1	0	0	0	13533	391	14	5	1383	5	RNF145	5	158601156	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	466131	158601156	22314104	1848	27535										
CCNJL	0	genome.wustl.edu	37	chr5	159686771	159686771	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgtggtcttcccgatcctcGaacttacctgtcggggagca	11	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	159686771	159686771	G	A	SNP	CCNJL	ENST00000393977	human	ensembl	69_37n	-1	known	silent	c.432	p.F144	0.998	smart_Cyclin-like	pfam_Cyclin_C,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083	313	1	0.32	186	74	28.24	-	-	-	A	159686771	G	A	159686771	2	1	275	1	0	0	0	0	0	0	0	1	2958	1049	37	1		1	CCNJL	5	159686771	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1085615	159686771	21228489	1849	27536										
GABRB2	0	genome.wustl.edu	37	chr5	160721162	160721162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaatatgcgggaccaccGatctatggcattcacatcag	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	160721162	160721162	G	A	SNP	GABRB2	ENST00000274547	human	ensembl	69_37n	-1	known	missense	c.1465	p.R489W	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAb_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	366	0	0	207	73	25.89	-	-	-	A	160721162	G	A	160721162	3	1	275	1	0	0	0	0	1	0	0	0	6216	1057	37	1	77	1	GABRB2	5	160721162	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1034391	160721162	20194098	1850	27537										
GABRA6	0	genome.wustl.edu	37	chr5	161119077	161119077	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcgtcttctctgcgcttatCgagttcgcagctgtcaacta	8	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	161119077	161119077	C	T	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	silent	c.957	p.I319	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	237	0	0	163	33	16.75	-	-	-	T	161119077	C	T	161119077	2	4	275	1	0	0	0	0	0	0	0	1	6214	874	31	1		1	GABRA6	5	161119077	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397915	161119077	19796183	1851	27538										
GABRA1	0	genome.wustl.edu	37	chr5	161292755	161292755	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accgaagtgaagactgatatCttcgtcaccagtttcggacc	9	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	161292755	161292755	C	A	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	silent	c.216	p.I72	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	534	0	0	334	48	12.53	-	-	-	A	161292755	C	A	161292755	2	1	275	1	0	0	0	0	0	0	0	1	6209	903	32	2		2	GABRA1	5	161292755	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	173678	161292755	19622505	1852	27539										
GABRA1	0	genome.wustl.edu	37	chr5	161309687	161309687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacaaacagtagactctgGaattgtccagtcaagtacag	10	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	161309687	161309687	G	A	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	missense	c.683	p.G228E	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	289	0	0	266	52	16.25	-	-	-	A	161309687	G	A	161309687	3	1	275	1	0	0	0	0	1	0	0	0	6209	1174	41	2	705	2	GABRA1	5	161309687	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16932	161309687	19605573	1853	27540										
GABRA1	0	genome.wustl.edu	37	chr5	161317947	161317947	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttccacttgaagagaaaGattggctactttgttattca	7	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	161317947	161317947	G	T	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	missense	c.747	p.K249N	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	213	0	0	119	50	29.59	-	-	-	T	161317947	G	T	161317947	3	4	275	1	0	0	0	0	1	0	0	0	6209	933	33	2	773	2	GABRA1	5	161317947	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8260	161317947	19597313	1854	27541										
NUDCD2	0	genome.wustl.edu	37	chr5	162884608	162884608	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctattgtagaatcaaaGagtttgccctgaaaaataaa	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	162884608	162884608	G	T	SNP	NUDCD2	ENST00000302764	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD2	HGNC	ENSG00000170584	151	0	0	75	30	28.57	-	-	-	T	162884608	G	T	162884608	2	4	275	1	0	0	0	0	0	0	0	1	10796	929	33	2		2	NUDCD2	5	162884608	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1566661	162884608	18030652	1855	27542										
MAT2B	0	genome.wustl.edu	37	chr5	162945299	162945299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggccaacgaacaccatttcGaattggaatcaaagaatcac	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	162945299	162945299	G	A	SNP	MAT2B	ENST00000321757	human	ensembl	69_37n	1	known	missense	c.935	p.R312Q	0.999	pfam_dTDP_dehydrorham_reduct	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	MAT2B	HGNC	ENSG00000038274	280	0	0	150	60	28.57	-	-	-	A	162945299	G	A	162945299	3	1	275	1	0	0	0	0	1	0	0	0	9402	1058	37	1	995	1	MAT2B	5	162945299	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	60691	162945299	17969961	1856	27543										
ODZ2	0	genome.wustl.edu	37	chr5	167622189	167622189	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctttctcagcttggtttCtctcatccgaggccaagtag	9	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	167622189	167622189	C	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.2789	p.S930Y	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	262	0	0	226	31	12.02	-	-	-	A	167622189	C	A	167622189	3	1	275	1	0	0	0	0	1	0	0	0	10908	913	32	2	2820	2	ODZ2	5	167622189	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4676890	167622189	13293071	1857	27544										
ODZ2	0	genome.wustl.edu	37	chr5	167671440	167671440	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctaggtccatggaagaaatCtcttgtccattgactatgat	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	167671440	167671440	C	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.5536	p.L1846I	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	51	0	0	42	5	10.64	-	-	-	A	167671440	C	A	167671440	3	1	275	1	0	0	0	0	1	0	0	0	10908	913	32	2	5611	2	ODZ2	5	167671440	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49251	167671440	13243820	1858	27545										
WWC1	0	genome.wustl.edu	37	chr5	167835597	167835597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagctctctggagagttCgagtttcccgctaccgaaac	10	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	167835597	167835597	C	T	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.806	p.S269L	0.999	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	135	0	0	86	35	28.69	-	-	-	T	167835597	C	T	167835597	3	4	275	1	0	0	0	0	1	0	0	0	17508	893	31	1	832	1	WWC1	5	167835597	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	164157	167835597	13079663	1859	27546										
SLIT3	0	genome.wustl.edu	37	chr5	168201241	168201241	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgaggcagtgtactcacaGtgtctggatggactgcagag	14	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	168201241	168201241	G	T	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	missense	c.1294	p.L432I	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	142	0	0	100	46	31.51	-	-	-	T	168201241	G	T	168201241	3	4	275	1	0	0	0	0	1	0	0	0	14830	1043	36	4	3373	4	SLIT3	5	168201241	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	365644	168201241	12714019	1860	27547										
ATP6V0E1	0	genome.wustl.edu	37	chr5	172421821	172421821	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgttcagtttgctgctatCtcttgtaagtaattttttct	6	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	172421821	172421821	C	T	SNP	ATP6V0E1	ENST00000517669	human	ensembl	69_37n	1	known	missense	c.148	p.L50F	1.000	pfam_ATPase_V0-cplx_esu,pirsf_ATPase_V0-cplx_esu_met	pfam_ATPase_V0-cplx_esu,pirsf_ATPase_V0-cplx_esu_met	-	no_errors	ATP6V0E1	HGNC	ENSG00000113732	678	0	0	494	193	28.09	-	-	-	T	172421821	C	T	172421821	3	4	275	1	0	0	0	0	1	0	0	0	1179	913	32	2	154	2	ATP6V0E1	5	172421821	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4220580	172421821	8493439	1861	27548										
HRH2	0	genome.wustl.edu	37	chr5	175111227	175111227	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtccaggacccaaagccgaGaacccaggcaacaggaagag	12	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	175111227	175111227	G	T	SNP	HRH2	ENST00000377291	human	ensembl	69_37n	1	known	nonsense	c.991	p.E331*	0.002	prints_Histamine_H2_recept	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,prints_7TM_GPCR_Rhodpsn,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH2	HGNC	ENSG00000113749	245	1	0.41	144	19	11.66	-	-	-	T	175111227	G	T	175111227	4	4	275	1	0	0	0	0	0	1	0	0	7407	943	33	2	993	2	HRH2	5	175111227	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2689406	175111227	5804033	1862	27549										
CDHR2	0	genome.wustl.edu	37	chr5	176004676	176004676	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcagccagaacttctccgtCgccatggtgaccatccacct	8	16	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176004676	176004676	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	silent	c.1389	p.V463	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	62	0	0	54	20	27.03	-	-	-	T	176004676	C	T	176004676	2	4	275	1	0	0	0	0	0	0	0	1	3148	871	31	1		1	CDHR2	5	176004676	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	893449	176004676	4910584	1863	27550										
ZNF346	0	genome.wustl.edu	37	chr5	176471522	176471522	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaagctgaagcagcagtccActaaggtggaaggtactggt	13	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176471522	176471522	A	G	SNP	ZNF346	ENST00000261948	human	ensembl	69_37n	1	known	missense	c.580	p.T194A	0.153	NULL	smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF346	HGNC	ENSG00000113761	246	0	0	235	59	20.07	-	-	-	G	176471522	A	G	176471522	3	3	275	1	0	0	0	0	1	0	0	0	17956	159	6	5	519	5	ZNF346	5	176471522	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	466846	176471522	4443738	1864	27551										
NSD1	0	genome.wustl.edu	37	chr5	176638917	176638917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcgcactaaacctcgtaagCgcatgaacagatttaaagag	10	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176638917	176638917	C	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.3517	p.R1173C	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	293	0	0	191	28	12.79	-	-	-	T	176638917	C	T	176638917	3	4	275	1	0	0	0	0	1	0	0	0	10742	768	27	1	3531	1	NSD1	5	176638917	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	167395	176638917	4276343	1865	27552										
NSD1	0	genome.wustl.edu	37	chr5	176721023	176721023	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctggaacctggggagatCcgtgagtatgtgcctccccc	12	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176721023	176721023	C	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	silent	c.6654	p.I2218	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	134	0	0	99	24	19.51	-	-	-	T	176721023	C	T	176721023	2	4	275	1	0	0	0	0	0	0	0	1	10742	845	30	2		2	NSD1	5	176721023	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	82106	176721023	4194237	1866	27553										
RGS14	0	genome.wustl.edu	37	chr5	176793231	176793231	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgagggccgcggcagctctCtcagcatccacagcctcccc	11	19	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176793231	176793231	C	A	SNP	RGS14	ENST00000408923	human	ensembl	69_37n	1	known	missense	c.121	p.L41I	0.954	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS14	HGNC	ENSG00000169220	27	0	0	13	5	27.78	-	-	-	A	176793231	C	A	176793231	3	1	275	1	0	0	0	0	1	0	0	0	13381	913	32	2	131	2	RGS14	5	176793231	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	72208	176793231	4122029	1867	27554										
SLC34A1	0	genome.wustl.edu	37	chr5	176816646	176816646	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctacttcatagcaaaatCtggaagggagagaaatcaca	8	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176816646	176816646	C	A	SNP	SLC34A1	ENST00000512593	human	ensembl	69_37n	1	putative	missense	c.943	p.L315M	0.009	NULL	pfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	52	0	0	36	10	21.74	-	-	-	A	176816646	C	A	176816646	3	1	275	1	0	0	0	0	1	0	0	0	14656	912	32	2	973	2	SLC34A1	5	176816646	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23415	176816646	4098614	1868	27555										
DBN1	0	genome.wustl.edu	37	chr5	176895200	176895200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggttctcaaagtgtcccGaaagctcctgcaagccccct	8	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176895200	176895200	G	A	SNP	DBN1	ENST00000292385	human	ensembl	69_37n	-1	known	missense	c.170	p.S57L	0.998	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	116	0	0	59	9	13.24	-	-	-	A	176895200	G	A	176895200	3	1	275	1	0	0	0	0	1	0	0	0	4284	1059	37	1	1833	1	DBN1	5	176895200	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	78554	176895200	4020060	1869	27556										
DOK3	0	genome.wustl.edu	37	chr5	176930125	176930125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagccctggaggcatgacGcttgcgtgcgtggctggctc	16	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	176930125	176930125	G	A	SNP	DOK3	ENST00000312943	human	ensembl	69_37n	-1	known	missense	c.914	p.A305V	0.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	51	0	0	24	11	31.43	-	-	-	A	176930125	G	A	176930125	3	1	275	1	0	0	0	0	1	0	0	0	4733	1087	38	1	82	1	DOK3	5	176930125	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34925	176930125	3985135	1870	27557										
B4GALT7	0	genome.wustl.edu	37	chr5	177031436	177031436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgctggtgcccttccgcGaacgcttcgaggagctcctg	13	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	177031436	177031436	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	69_37n	1	known	missense	c.307	p.E103K	0.998	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT7	HGNC	ENSG00000027847	66	0	0	33	5	13.16	-	-	-	A	177031436	G	A	177031436	3	1	275	1	0	0	0	0	1	0	0	0	1280	1059	37	1	313	1	B4GALT7	5	177031436	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101311	177031436	3883824	1871	27558										
FAM153C	0	genome.wustl.edu	37	chr5	177482538	177482538	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtctcagcaagaggaatgCggtaggagagcagggtgtca	17	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	177482538	177482538	C	T	SNP	FAM153C	ENST00000506096	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.274	-	-	-	no_errors	FAM153C	HGNC	ENSG00000204677	13	0	0	13	6	30	-	-	-	T	177482538	C	T	177482538	1	4	275	0	1	0	0	0	0	0	0	0	5502	783	27	1		1	FAM153C	5	177482538	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	451102	177482538	3432722	1872	27559										
CLK4	0	genome.wustl.edu	37	chr5	178040539	178040539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatttgaaatggcagaaagCtgttttctttaatgaaatcg	8	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	178040539	178040539	C	A	SNP	CLK4	ENST00000316308	human	ensembl	69_37n	-1	known	missense	c.761	p.S254I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK4	HGNC	ENSG00000113240	157	0	0	115	43	27.22	-	-	-	A	178040539	C	A	178040539	3	1	275	1	0	0	0	0	1	0	0	0	3569	797	28	4	712	4	CLK4	5	178040539	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	558001	178040539	2874721	1873	27560										
ZNF354B	0	genome.wustl.edu	37	chr5	178310945	178310945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagaccctataagtgtaacGaatgtgacaaaacattcagg	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	178310945	178310945	G	A	SNP	ZNF354B	ENST00000322434	human	ensembl	69_37n	1	known	missense	c.1492	p.E498K	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338	166	1	0.6	144	26	15.29	-	-	-	A	178310945	G	A	178310945	3	1	275	1	0	0	0	0	1	0	0	0	17961	1059	37	1	1506	1	ZNF354B	5	178310945	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	270406	178310945	2604315	1874	27561										
RUFY1	0	genome.wustl.edu	37	chr5	179016622	179016622	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaacaaaatgaattaattCgagaaagaagtgaaaagagt	10	2	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	179016622	179016622	C	T	SNP	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	nonsense	c.1102	p.R368*	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	184	0	0	148	41	21.69	-	-	-	T	179016622	C	T	179016622	4	4	275	1	0	0	0	0	0	1	0	0	13824	876	31	1	1136	1	RUFY1	5	179016622	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	705677	179016622	1898638	1875	27562										
MAML1	0	genome.wustl.edu	37	chr5	179193520	179193520	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttgaatcagaactccgcGaataaccaggggtctgtgct	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	179193520	179193520	G	A	SNP	MAML1	ENST00000292599	human	ensembl	69_37n	1	known	silent	c.1509	p.A503	0.546	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	214	0	0	105	29	21.48	-	-	-	A	179193520	G	A	179193520	2	1	275	1	0	0	0	0	0	0	0	1	9276	1045	37	1		1	MAML1	5	179193520	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	176898	179193520	1721740	1876	27563										
SQSTM1	0	genome.wustl.edu	37	chr5	179263530	179263530	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaggctcctgcagaccaaGaactatgacatcggagcggc	11	13	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	179263530	179263530	G	T	SNP	SQSTM1	ENST00000389805	human	ensembl	69_37n	1	known	missense	c.1260	p.K420N	1.000	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011	151	0	0	71	11	13.41	-	-	-	T	179263530	G	T	179263530	3	4	275	1	0	0	0	0	1	0	0	0	15221	933	33	2	1290	2	SQSTM1	5	179263530	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70010	179263530	1651730	1877	27564										
TBC1D9B	0	genome.wustl.edu	37	chr5	179302161	179302161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagtctctcgtgagctcttCgaagatgccttggtccacca	10	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	179302161	179302161	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.1927	p.E643K	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	24	0	0	11	8	42.11	-	-	-	T	179302161	C	T	179302161	3	4	275	1	0	0	0	0	1	0	0	0	15723	893	31	1	1869	1	TBC1D9B	5	179302161	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	38631	179302161	1613099	1878	27565										
BTNL8	0	genome.wustl.edu	37	chr5	180377039	180377039	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaagagtgtggtggcttCtcagagtttccaagcaggga	15	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	180377039	180377039	C	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	1	known	missense	c.998	p.S333Y	0.288	superfamily_ConA-like_lec_gl,smart_PRY,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	927	0	0	633	78	10.97	-	-	-	A	180377039	C	A	180377039	3	1	275	1	0	0	0	0	1	0	0	0	1576	913	32	2	1184	2	BTNL8	5	180377039	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1074878	180377039	538221	1879	27566										
BTNL3	0	genome.wustl.edu	37	chr5	180429772	180429772	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggggatgataattgttttCttcaaatccaaaggtaagtg	10	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	180429772	180429772	C	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	missense	c.774	p.F258L	0.001	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	375	0	0	259	33	11.3	-	-	-	A	180429772	C	A	180429772	3	1	275	1	0	0	0	0	1	0	0	0	1575	912	32	2	788	2	BTNL3	5	180429772	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	52733	180429772	485488	1880	27567										
BTNL3	0	genome.wustl.edu	37	chr5	180432613	180432613	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgggtattgggtcctcaGactgacaacagaacatttgt	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	5	180432613	180432613	G	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	missense	c.1142	p.R381K	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	497	0	0	289	155	34.83	-	-	-	A	180432613	G	A	180432613	3	1	275	1	0	0	0	0	1	0	0	0	1575	942	33	2	1172	2	BTNL3	5	180432613	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2841	180432613	482647	1881	27568										
BPHL	0	genome.wustl.edu	37	chr6	3129411	3129411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaacgcctacgtcactgacGaagacagcatgatatatgag	9	11	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	3129411	3129411	G	A	SNP	BPHL	ENST00000380379	human	ensembl	69_37n	1	known	missense	c.511	p.E171K	0.790	NULL	pfam_AB_hydrolase_1	-	no_errors	BPHL	HGNC	ENSG00000137274	276	0	0	96	115	54.5	-	-	-	A	3129411	G	A	3129411	3	1	275	1	0	0	0	0	1	0	0	0	1497	1059	37	1	525	1	BPHL	6	3129411	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		3129411	167985656	1882	27569										
C6orf201	0	genome.wustl.edu	37	chr6	4099316	4099316	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attaatctgaccccaaagccGaacagaatgcccccgtggaa	8	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	4099316	4099316	G	A	SNP	C6orf201	ENST00000333388	human	ensembl	69_37n	1	known	silent	c.177	p.P59	0.980	NULL	NULL	-	no_errors	C6orf201	HGNC	ENSG00000185689	241	0	0	141	58	29	-	-	-	A	4099316	G	A	4099316	2	1	275	1	0	0	0	0	0	0	0	1	2372	1045	37	1		1	C6orf201	6	4099316	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	969905	4099316	167015751	1883	27570										
FARS2	0	genome.wustl.edu	37	chr6	5613443	5613443	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatcaatgatatttcattCtggttgccctctgagaatta	8	7	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	5613443	5613443	C	A	SNP	FARS2	ENST00000274680	human	ensembl	69_37n	1	known	missense	c.1107	p.F369L	1.000	pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,tigrfam_Phe-tRNA-synth_IIc_mito	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982	573	0	0	446	53	10.6	-	-	-	A	5613443	C	A	5613443	3	1	275	1	0	0	0	0	1	0	0	0	5724	912	32	2	1125	2	FARS2	6	5613443	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1514127	5613443	165501624	1884	27571										
NRN1	0	genome.wustl.edu	37	chr6	6002688	6002688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgaaaagcccttgaagaccGcatcgcacttgcccgctgct	9	16	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	6002688	6002688	G	A	SNP	NRN1	ENST00000244766	human	ensembl	69_37n	-1	known	missense	c.98	p.A33V	1.000	NULL	NULL	-	no_errors	NRN1	HGNC	ENSG00000124785	136	0	0	60	24	28.57	-	-	-	A	6002688	G	A	6002688	3	1	275	1	0	0	0	0	1	0	0	0	10731	1087	38	1	338	1	NRN1	6	6002688	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	389245	6002688	165112379	1885	27572										
F13A1	0	genome.wustl.edu	37	chr6	6248583	6248583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgactttgatgggattccCtcttccagagaggtccattt	10	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	6248583	6248583	C	T	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	missense	c.760	p.G254R	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	172	0	0	147	36	19.67	-	-	-	T	6248583	C	T	6248583	3	4	275	1	0	0	0	0	1	0	0	0	5377	681	24	4	1478	4	F13A1	6	6248583	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245895	6248583	164866484	1886	27573										
CAGE1	0	genome.wustl.edu	37	chr6	7327107	7327107	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtttaatctaaatcatttCtattttctttaaaaagagct	3	5	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7327107	7327107	C	A	SNP	CAGE1	ENST00000296742	human	ensembl	69_37n	-1	known	missense	c.1910	p.R637I	0.997	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304	89	0	0	100	16	13.79	-	-	-	A	7327107	C	A	7327107	3	1	275	1	0	0	0	0	1	0	0	0	2597	913	32	2	19	2	CAGE1	6	7327107	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1078524	7327107	163787960	1887	27574										
CAGE1	0	genome.wustl.edu	37	chr6	7334289	7334289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttctctgggctttctaaTtaaatcctctaaatgtttat	4	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7334289	7334289	T	C	SNP	CAGE1	ENST00000338150	human	ensembl	69_37n	-1	known	missense	c.2299	p.I767V	0.994	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304	375	0	0	335	48	12.5	-	-	-	C	7334289	T	C	7334289	3	2	275	1	0	0	0	0	1	0	0	0	2597	1493	52	5	233	5	CAGE1	6	7334289	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	7182	7334289	163780778	1888	27575										
CAGE1	0	genome.wustl.edu	37	chr6	7373468	7373468	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgaagttttatattcttCgttctttcattttcagacat	5	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7373468	7373468	C	T	SNP	CAGE1	ENST00000338150	human	ensembl	69_37n	-1	known	silent	c.1584	p.T528	0.012	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304	273	1	0.36	169	94	35.74	-	-	-	T	7373468	C	T	7373468	2	4	275	1	0	0	0	0	0	0	0	1	2597	871	31	1		1	CAGE1	6	7373468	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39179	7373468	163741599	1889	27576										
DSP	0	genome.wustl.edu	37	chr6	7584869	7584869	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggtgcagacatcacaaaaGaataccctcaggaagcgtag	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7584869	7584869	G	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.7374	p.K2458N	0.965	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	252	0	0	167	26	13.47	-	-	-	T	7584869	G	T	7584869	3	4	275	1	0	0	0	0	1	0	0	0	4816	933	33	2	7468	2	DSP	6	7584869	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	211401	7584869	163530198	1890	27577										
DSP	0	genome.wustl.edu	37	chr6	7585060	7585060	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggtggtcctggtagataGaaagacaggcagtcagtatg	15	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7585060	7585060	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.7565	p.R2522K	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	126	0	0	56	22	27.85	-	-	-	A	7585060	G	A	7585060	3	1	275	1	0	0	0	0	1	0	0	0	4816	942	33	2	7659	2	DSP	6	7585060	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	191	7585060	163530007	1891	27578										
DSP	0	genome.wustl.edu	37	chr6	7585737	7585737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatgggaggataagcaccGaagaagccatccggaagggg	16	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7585737	7585737	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.8242	p.E2748K	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	46	0	0	32	6	15.79	-	-	-	A	7585737	G	A	7585737	3	1	275	1	0	0	0	0	1	0	0	0	4816	1059	37	1	8336	1	DSP	6	7585737	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	677	7585737	163529330	1892	27579										
TXNDC5	0	genome.wustl.edu	37	chr6	7886205	7886205	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccacttaccatggagcataAaacttgatgaaggttattcc	8	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	7886205	7886205	A	C	SNP	TXNDC5	ENST00000379757	human	ensembl	69_37n	-1	known	missense	c.1035	p.F345L	0.998	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264	127	0	0	84	24	22.22	-	-	-	C	7886205	A	C	7886205	3	2	275	1	0	0	0	0	1	0	0	0	16896	11	1	5	275	5	TXNDC5	6	7886205	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	300468	7886205	163228862	1893	27580										
PAK1IP1	0	genome.wustl.edu	37	chr6	10707689	10707689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaattccagagcatcatgTtattgtttcagcatcgagtg	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	10707689	10707689	T	C	SNP	PAK1IP1	ENST00000379568	human	ensembl	69_37n	1	known	missense	c.782	p.V261A	0.459	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAK1IP1	HGNC	ENSG00000111845	612	0	0	407	133	24.58	-	-	-	C	10707689	T	C	10707689	3	2	275	1	0	0	0	0	1	0	0	0	11473	1725	60	5	812	5	PAK1IP1	6	10707689	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2821484	10707689	160407378	1894	27581										
MAK	0	genome.wustl.edu	37	chr6	10819153	10819153	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttcatgcattcatcccaaGaatagaactttctcttcatc	4	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	10819153	10819153	G	T	SNP	MAK	ENST00000313243	human	ensembl	69_37n	-1	known	missense	c.122	p.S41Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAK	HGNC	ENSG00000111837	520	0	0	363	49	11.89	-	-	-	T	10819153	G	T	10819153	3	4	275	1	0	0	0	0	1	0	0	0	9268	942	33	2	1797	2	MAK	6	10819153	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	111464	10819153	160295914	1895	27582										
SYCP2L	0	genome.wustl.edu	37	chr6	10910409	10910409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgttttctcaatcacctaaAcaacagacttggtgaccaaa	5	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	10910409	10910409	A	G	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	missense	c.848	p.N283S	0.957	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	365	0	0	268	35	11.51	-	-	-	G	10910409	A	G	10910409	3	3	275	1	0	0	0	0	1	0	0	0	15525	43	2	5	890	5	SYCP2L	6	10910409	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	91256	10910409	160204658	1896	27583										
SYCP2L	0	genome.wustl.edu	37	chr6	10913129	10913129	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggactcagtgacacttccGaaggaagcggtgatgaattt	13	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	10913129	10913129	G	A	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	silent	c.1041	p.P347	0.005	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	187	1	0.53	157	29	15.59	-	-	-	A	10913129	G	A	10913129	2	1	275	1	0	0	0	0	0	0	0	1	15525	1045	37	1		1	SYCP2L	6	10913129	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2720	10913129	160201938	1897	27584										
SYCP2L	0	genome.wustl.edu	37	chr6	10927484	10927484	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgtatagagcaggcagaaGaatccactaacatggtggag	12	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	10927484	10927484	G	T	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	nonsense	c.1324	p.E442*	0.972	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	252	0	0	193	22	10.23	-	-	-	T	10927484	G	T	10927484	4	4	275	1	0	0	0	0	0	1	0	0	15525	943	33	2	1390	2	SYCP2L	6	10927484	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14355	10927484	160187583	1898	27585										
HIVEP1	0	genome.wustl.edu	37	chr6	12120153	12120153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctggtgttaaaggaacttCggaatcccttaaaggtgtga	13	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	12120153	12120153	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.125	p.S42L	0.894	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	132	0	0	166	23	12.11	-	-	-	T	12120153	C	T	12120153	3	4	275	1	0	0	0	0	1	0	0	0	7237	893	31	1	135	1	HIVEP1	6	12120153	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1192669	12120153	158994914	1899	27586										
HIVEP1	0	genome.wustl.edu	37	chr6	12121176	12121176	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactcatgttgcctctgttgTtaatcaaagcgtagagcaaa	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	12121176	12121176	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.1148	p.V383A	0.944	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	104	0	0	124	19	13.29	-	-	-	C	12121176	T	C	12121176	3	2	275	1	0	0	0	0	1	0	0	0	7237	1725	60	5	1158	5	HIVEP1	6	12121176	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1023	12121176	158993891	1900	27587										
EDN1	0	genome.wustl.edu	37	chr6	12294550	12294550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaaaggaaaagactgttCcaagcttgggaaaaagtgta	11	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	12294550	12294550	C	A	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	missense	c.446	p.S149Y	0.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	318	0	0	193	62	24.31	-	-	-	A	12294550	C	A	12294550	3	1	275	1	0	0	0	0	1	0	0	0	4951	855	30	2	460	2	EDN1	6	12294550	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	173374	12294550	158820517	1901	27588										
SIRT5	0	genome.wustl.edu	37	chr6	13588578	13588578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaggtatggcagattttcGaaagttttttgcaaaagcaa	9	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	13588578	13588578	G	A	SNP	SIRT5	ENST00000379250	human	ensembl	69_37n	1	known	missense	c.131	p.R44Q	1.000	pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT5	HGNC	ENSG00000124523	179	0	0	200	26	11.45	-	-	-	A	13588578	G	A	13588578	3	1	275	1	0	0	0	0	1	0	0	0	14430	1058	37	1	137	1	SIRT5	6	13588578	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1294028	13588578	157526489	1902	27589										
NOL7	0	genome.wustl.edu	37	chr6	13620560	13620560	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggaaccaacaggactacTggtaatttttttatggacta	8	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	13620560	13620560	T	G	SNP	NOL7	ENST00000451315	human	ensembl	69_37n	1	known	silent	c.621	p.T207	0.957	pfam_NUC129	pfam_NUC129	-	no_errors	NOL7	HGNC	ENSG00000225921	447	0	0	296	44	12.94	-	-	-	G	13620560	T	G	13620560	2	3	275	1	0	0	0	0	0	0	0	1	10598	1594	55	5		5	NOL7	6	13620560	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	31982	13620560	157494507	1903	27590										
RANBP9	0	genome.wustl.edu	37	chr6	13641458	13641458	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaaaggagattaggatttCtttcaagtaaacttgggtat	10	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	13641458	13641458	C	A	SNP	RANBP9	ENST00000011619	human	ensembl	69_37n	-1	known	missense	c.1307	p.R436I	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP9	HGNC	ENSG00000010017	579	0	0	385	65	14.44	-	-	-	A	13641458	C	A	13641458	3	1	275	1	0	0	0	0	1	0	0	0	13115	913	32	2	910	2	RANBP9	6	13641458	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20898	13641458	157473609	1904	27591										
DTNBP1	0	genome.wustl.edu	37	chr6	15615517	15615517	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttatttttcttgtaatTctccagttgctgggactgca	7	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	15615517	15615517	T	C	SNP	DTNBP1	ENST00000355917	human	ensembl	69_37n	-1	known	missense	c.469	p.N157D	1.000	NULL	pfam_Dysbindin,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	DTNBP1	HGNC	ENSG00000047579	360	0	0	219	43	16.41	-	-	-	C	15615517	T	C	15615517	3	2	275	1	0	0	0	0	1	0	0	0	4825	1783	62	5	707	5	DTNBP1	6	15615517	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1974059	15615517	155499550	1905	27592										
RBM24	0	genome.wustl.edu	37	chr6	17283087	17283087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcctgcaaggatcccaatCccatcattgatggcagaaag	11	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	17283087	17283087	C	T	SNP	RBM24	ENST00000379052	human	ensembl	69_37n	1	known	missense	c.220	p.P74S	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM24	HGNC	ENSG00000112183	107	0	0	73	31	29.81	-	-	-	T	17283087	C	T	17283087	3	4	275	1	0	0	0	0	1	0	0	0	13207	855	30	2	259	2	RBM24	6	17283087	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1667570	17283087	153831980	1906	27593										
NUP153	0	genome.wustl.edu	37	chr6	17637557	17637557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatagtctcagcactttccGaaaccactgtcaatgtaagg	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	17637557	17637557	G	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.2384	p.S795L	0.840	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	293	0	0	195	81	28.93	-	-	-	A	17637557	G	A	17637557	3	1	275	1	0	0	0	0	1	0	0	0	10828	1059	37	1	2164	1	NUP153	6	17637557	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	354470	17637557	153477510	1907	27594										
KIF13A	0	genome.wustl.edu	37	chr6	17856348	17856348	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcacttgaaaaccacttCttgacctaaaaaacaagaca	5	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	17856348	17856348	C	A	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	nonsense	c.226	p.E76*	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	186	1	0.53	125	22	14.97	-	-	-	A	17856348	C	A	17856348	4	1	275	1	0	0	0	0	0	1	0	0	8326	922	32	2	5356	2	KIF13A	6	17856348	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	218791	17856348	153258719	1908	27595										
E2F3	0	genome.wustl.edu	37	chr6	20490441	20490441	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatagcgattgctcagtttCtatgggaaacctttctcctc	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	20490441	20490441	C	A	SNP	E2F3	ENST00000346618	human	ensembl	69_37n	1	known	missense	c.1178	p.S393Y	0.976	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242	49	0	0	25	19	43.18	-	-	-	A	20490441	C	A	20490441	3	1	275	1	0	0	0	0	1	0	0	0	4903	913	32	2	1204	2	E2F3	6	20490441	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2634093	20490441	150624626	1909	27596										
GPLD1	0	genome.wustl.edu	37	chr6	24446034	24446034	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaaggctctttttctcatCtcggatgtgtaacaaatggc	8	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	24446034	24446034	C	T	SNP	GPLD1	ENST00000230036	human	ensembl	69_37n	-1	known	missense	c.1846	p.D616N	0.000	smart_Int_alpha_beta-p	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293	147	0	0	146	17	10.37	-	-	-	T	24446034	C	T	24446034	3	4	275	1	0	0	0	0	1	0	0	0	6664	913	32	2	704	2	GPLD1	6	24446034	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3955593	24446034	146669033	1910	27597										
FAM65B	0	genome.wustl.edu	37	chr6	24825457	24825457	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggtttagtgtcttaccttTtccctgaaatgctgattttt	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	24825457	24825457	T	G	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.2928	p.E976D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	158	0	0	146	18	10.98	-	-	-	G	24825457	T	G	24825457	3	3	275	1	0	0	0	0	1	0	0	0	5645	1838	64	5	294	5	FAM65B	6	24825457	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	379423	24825457	146289610	1911	27598										
FAM65B	0	genome.wustl.edu	37	chr6	24873114	24873114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcatagtacctaccaggcGagagtttcttttcatatctt	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	24873114	24873114	G	A	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.331	p.R111C	0.992	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	53	0	0	46	7	13.21	-	-	-	A	24873114	G	A	24873114	3	1	275	1	0	0	0	0	1	0	0	0	5645	1058	37	1	2965	1	FAM65B	6	24873114	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	47657	24873114	146241953	1912	27599										
LRRC16A	0	genome.wustl.edu	37	chr6	25279945	25279945	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatctgcctctctaaaaaAattgaggagttcggggaagg	12	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	25279945	25279945	A	C	SNP	LRRC16A	ENST00000494470	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC16A	HGNC	ENSG00000079691	109	0	0	69	21	23.08	-	-	-	C	25279945	A	C	25279945	1	2	275	0	1	0	0	0	0	0	0	0	9037	29	1	5		5	LRRC16A	6	25279945	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	406831	25279945	145835122	1913	27600										
LRRC16A	0	genome.wustl.edu	37	chr6	25610306	25610306	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagactctccatctagcccGaaagttgcccttcttccacc	5	18	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	25610306	25610306	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	silent	c.3876	p.P1292	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	132	0	0	87	26	22.81	-	-	-	A	25610306	G	A	25610306	2	1	275	1	0	0	0	0	0	0	0	1	9037	1045	37	1		1	LRRC16A	6	25610306	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	330361	25610306	145504761	1914	27601										
HIST1H2BG	0	genome.wustl.edu	37	chr6	26216658	26216658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctcgcctgcgatgcgttCgaagatgtcgttaacgaagg	13	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	26216658	26216658	C	T	SNP	HIST1H2BG	ENST00000244601	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990	299	1	0.33	205	38	15.57	-	-	-	T	26216658	C	T	26216658	3	4	275	1	0	0	0	0	1	0	0	0	7197	893	31	1	170	1	HIST1H2BG	6	26216658	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	606352	26216658	144898409	1915	27602										
PRSS16	0	genome.wustl.edu	37	chr6	27222813	27222813	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaacacaggctttaggatCctcagaatcaactcttctta	6	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	27222813	27222813	C	A	SNP	PRSS16	ENST00000230582	human	ensembl	69_37n	1	known	missense	c.1379	p.S460Y	0.001	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRSS16	HGNC	ENSG00000112812	72	0	0	48	10	17.24	-	-	-	A	27222813	C	A	27222813	3	1	275	1	0	0	0	0	1	0	0	0	12696	855	30	2	1421	2	PRSS16	6	27222813	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1006155	27222813	143892254	1916	27603										
OR10C1	0	genome.wustl.edu	37	chr6	29407840	29407840	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtttcttcttctcggcttCtcccacctggccgacctcca	7	17	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	29407840	29407840	C	A	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	missense	c.48	p.F16L	0.101	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	35	0	0	25	15	36.59	-	-	-	A	29407840	C	A	29407840	3	1	275	1	0	0	0	0	1	0	0	0	10971	912	32	2	50	2	OR10C1	6	29407840	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2185027	29407840	141707227	1917	27604										
DDR1	0	genome.wustl.edu	37	chr6	30862373	30862373	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaaccgcccaggtcctagaGagccacccccgtaccaggag	10	17	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	30862373	30862373	G	A	SNP	DDR1	ENST00000376575	human	ensembl	69_37n	1	known	missense	c.1438	p.E480K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	160	0	0	116	17	12.78	-	-	-	A	30862373	G	A	30862373	3	1	275	1	0	0	0	0	1	0	0	0	4367	943	33	2	1476	2	DDR1	6	30862373	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1454533	30862373	140252694	1918	27605										
MSH5	0	genome.wustl.edu	37	chr6	31728555	31728555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtagacgccatcttcacacGaattcatagctgcgaatcca	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	31728555	31728555	G	A	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.1952	p.R651Q	1.000	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	8	0	0	11	6	35.29	-	-	-	A	31728555	G	A	31728555	3	1	275	1	0	0	0	0	1	0	0	0	9945	1058	37	1	2026	1	MSH5	6	31728555	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	866182	31728555	139386512	1919	27606										
TNXB	0	genome.wustl.edu	37	chr6	32039946	32039946	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgaaccacaaaggagtcgAattcaccctcagggactgtc	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32039946	32039946	A	C	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.4811	p.F1604C	0.404	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	75	0	0	39	5	11.36	-	-	-	C	32039946	A	C	32039946	3	2	275	1	0	0	0	0	1	0	0	0	16441	246	9	5	10030	5	TNXB	6	32039946	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	311391	32039946	139075121	1920	27607										
PPT2	0	genome.wustl.edu	37	chr6	32123519	32123519	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgatcacaacgtggattCtttcatctccctctcctctc	6	14	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32123519	32123519	C	A	SNP	PPT2	ENST00000361568	human	ensembl	69_37n	1	known	missense	c.410	p.S137Y	1.000	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988	462	1	0.22	254	79	23.65	-	-	-	A	32123519	C	A	32123519	3	1	275	1	0	0	0	0	1	0	0	0	12489	913	32	2	424	2	PPT2	6	32123519	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83573	32123519	138991548	1921	27608										
C6orf10	0	genome.wustl.edu	37	chr6	32260988	32260988	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaaaactctccttcttttCttgggcttcctgtcctttta	4	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32260988	32260988	C	A	SNP	C6orf10	ENST00000447241	human	ensembl	69_37n	-1	known	nonsense	c.1462	p.E488*	0.000	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	52	0	0	29	9	23.68	-	-	-	A	32260988	C	A	32260988	4	1	275	1	0	0	0	0	0	1	0	0	2338	922	32	2	233	2	C6orf10	6	32260988	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	137469	32260988	138854079	1922	27609										
C6orf10	0	genome.wustl.edu	37	chr6	32291368	32291368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaaagaaattgaacttacCgcggggtgctgaaggtggac	14	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32291368	32291368	C	T	SNP	C6orf10	ENST00000447241	human	ensembl	69_37n	-1	known	missense	c.538	p.G180S	0.134	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	82	0	0	72	13	15.29	-	-	-	T	32291368	C	T	32291368	3	4	275	1	0	0	0	0	1	0	0	0	2338	667	23	1		1	C6orf10	6	32291368	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30380	32291368	138823699	1923	27610										
TAP2	0	genome.wustl.edu	37	chr6	32797291	32797291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttctgtcccgcagccagCtggcttcccttctcccctac	7	18	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32797291	32797291	C	T	SNP	TAP2	ENST00000374897	human	ensembl	69_37n	-1	known	silent	c.1818	p.Q606	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267	296	0	0	200	39	16.18	-	-	-	T	32797291	C	T	32797291	2	4	275	1	0	0	0	0	0	0	0	1	15643	796	28	4		4	TAP2	6	32797291	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	505923	32797291	138317776	1924	27611										
TAP1	0	genome.wustl.edu	37	chr6	32818169	32818169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctttatttcttgcagcttTtccctaaacttctgggcttc	6	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	32818169	32818169	T	G	SNP	TAP1	ENST00000354258	human	ensembl	69_37n	-1	known	missense	c.1356	p.E452D	0.194	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_ABC_B2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394	293	0	0	146	57	28.08	-	-	-	G	32818169	T	G	32818169	3	3	275	1	0	0	0	0	1	0	0	0	15642	1838	64	5	1098	5	TAP1	6	32818169	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	20878	32818169	138296898	1925	27612										
WDR46	0	genome.wustl.edu	37	chr6	33254922	33254922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggttctgactcataacatCgagccgcccagctcgagcat	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	33254922	33254922	C	T	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	missense	c.961	p.D321N	0.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	81	0	0	72	13	15.12	-	-	-	T	33254922	C	T	33254922	3	4	275	1	0	0	0	0	1	0	0	0	17396	884	31	1	899	1	WDR46	6	33254922	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	436753	33254922	137860145	1926	27613										
DAXX	0	genome.wustl.edu	37	chr6	33286558	33286558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacgatgatctcttctggatCgcattgtgtggccacacttg	10	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	33286558	33286558	C	T	SNP	DAXX	ENST00000266000	human	ensembl	69_37n	-1	known	missense	c.2185	p.D729N	0.999	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	119	0	0	71	25	25.77	-	-	-	T	33286558	C	T	33286558	3	4	275	1	0	0	0	0	1	0	0	0	4275	884	31	1	41	1	DAXX	6	33286558	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31636	33286558	137828509	1927	27614										
HMGA1	0	genome.wustl.edu	37	chr6	34208575	34208575	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagatgagtgagtcgagctcGaagtccagccagcccttggc	13	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	34208575	34208575	G	A	SNP	HMGA1	ENST00000395004	human	ensembl	69_37n	1	known	silent	c.18	p.S6	0.797	NULL	prints_HMGI/HMGY,prints_AT_hook-like	-	no_errors	HMGA1	HGNC	ENSG00000137309	65	0	0	31	17	35.42	-	-	-	A	34208575	G	A	34208575	2	1	275	1	0	0	0	0	0	0	0	1	7274	1045	37	1		1	HMGA1	6	34208575	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	922017	34208575	136906492	1928	27615										
NUDT3	0	genome.wustl.edu	37	chr6	34256664	34256664	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacgggtttgtgatactgcaGcacttttatggcgtcttcta	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	34256664	34256664	G	A	SNP	NUDT3	ENST00000358797	human	ensembl	69_37n	-1	known	silent	c.385	p.L129	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT3	HGNC	ENSG00000112664	533	0	0	356	60	14.42	-	-	-	A	34256664	G	A	34256664	2	1	275	1	0	0	0	0	0	0	0	1	10813	962	34	4		4	NUDT3	6	34256664	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48089	34256664	136858403	1929	27616										
PACSIN1	0	genome.wustl.edu	37	chr6	34497536	34497536	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgtttgagcaatgccagCaatttgaggaaaagcggctg	14	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	34497536	34497536	C	A	SNP	PACSIN1	ENST00000244458	human	ensembl	69_37n	1	known	missense	c.706	p.Q236K	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN1	HGNC	ENSG00000124507	185	0	0	88	34	27.87	-	-	-	A	34497536	C	A	34497536	3	1	275	1	0	0	0	0	1	0	0	0	11447	711	25	4	724	4	PACSIN1	6	34497536	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	240872	34497536	136617531	1930	27617										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34840165	34840165	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaatgccaaccaggataaaGaaaaacttcttcaggagatt	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	34840165	34840165	G	T	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	nonsense	c.4273	p.E1425*	0.994	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	82	0	0	94	20	17.54	-	-	-	T	34840165	G	T	34840165	4	4	275	1	0	0	0	0	0	1	0	0	17065	943	33	2	4355	2	UHRF1BP1	6	34840165	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	342629	34840165	136274902	1931	27618										
SCUBE3	0	genome.wustl.edu	37	chr6	35207566	35207566	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaacaacgggggctgtgaCcatatttgccgcaacacagt	10	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	35207566	35207566	C	A	SNP	SCUBE3	ENST00000394681	human	ensembl	69_37n	1	known	missense	c.915	p.D305E	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,prints_Thrombomodulin,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE3	HGNC	ENSG00000146197	114	0	0	106	12	10.17	-	-	-	A	35207566	C	A	35207566	3	1	275	1	0	0	0	0	1	0	0	0	14034	506	18	4	897	4	SCUBE3	6	35207566	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	367401	35207566	135907501	1932	27619										
SCUBE3	0	genome.wustl.edu	37	chr6	35213815	35213815	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaagctctggatcaacttCaagacaagcgaggccaacag	11	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	35213815	35213815	C	A	SNP	SCUBE3	ENST00000394681	human	ensembl	69_37n	1	known	missense	c.2742	p.F914L	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,prints_Thrombomodulin,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE3	HGNC	ENSG00000146197	245	2	0.81	199	40	16.74	-	-	-	A	35213815	C	A	35213815	3	1	275	1	0	0	0	0	1	0	0	0	14034	825	29	2	2772	2	SCUBE3	6	35213815	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6249	35213815	135901252	1933	27620										
DEF6	0	genome.wustl.edu	37	chr6	35287666	35287666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagcaggagcgctacatcGaacgggcgcagcaggagaag	17	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	35287666	35287666	G	A	SNP	DEF6	ENST00000316637	human	ensembl	69_37n	1	known	missense	c.1453	p.E485K	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892	108	0	0	73	14	16.09	-	-	-	A	35287666	G	A	35287666	3	1	275	1	0	0	0	0	1	0	0	0	4417	1059	37	1	1487	1	DEF6	6	35287666	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	73851	35287666	135827401	1934	27621										
LHFPL5	0	genome.wustl.edu	37	chr6	35773673	35773673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggtaacgtgctgtcctccGagctcatctgcaagggcggc	14	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	35773673	35773673	G	A	SNP	LHFPL5	ENST00000360215	human	ensembl	69_37n	1	known	missense	c.226	p.E76K	0.999	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL5	HGNC	ENSG00000197753	176	0	0	99	16	13.91	-	-	-	A	35773673	G	A	35773673	3	1	275	1	0	0	0	0	1	0	0	0	8823	1059	37	1	228	1	LHFPL5	6	35773673	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	486007	35773673	135341394	1935	27622										
C6orf222	0	genome.wustl.edu	37	chr6	36287170	36287170	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgggaactgggtgcaattgTagtggtctcttaggcccatg	14	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	36287170	36287170	T	C	SNP	C6orf222	ENST00000437635	human	ensembl	69_37n	-1	known	missense	c.1886	p.Y629C	0.000	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325	102	0	0	71	9	11.11	-	-	-	C	36287170	T	C	36287170	3	2	275	1	0	0	0	0	1	0	0	0	2377	1638	57	5	80	5	C6orf222	6	36287170	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	513497	36287170	134827897	1936	27623										
KCTD20	0	genome.wustl.edu	37	chr6	36442733	36442733	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagtgtgggctttggcagtAattcccattcccaagcacca	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	36442733	36442733	A	C	SNP	KCTD20	ENST00000373731	human	ensembl	69_37n	1	known	missense	c.328	p.N110H	0.568	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078	163	0	0	119	17	12.5	-	-	-	C	36442733	A	C	36442733	3	2	275	1	0	0	0	0	1	0	0	0	8162	362	13	5	334	5	KCTD20	6	36442733	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	155563	36442733	134672334	1937	27624										
CPNE5	0	genome.wustl.edu	37	chr6	36767835	36767835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcgtgttgtcgatgacttCggtgcgcccaaactgcaaga	13	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	36767835	36767835	C	T	SNP	CPNE5	ENST00000244751	human	ensembl	69_37n	-1	known	missense	c.196	p.E66K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772	46	0	0	32	24	42.86	-	-	-	T	36767835	C	T	36767835	3	4	275	1	0	0	0	0	1	0	0	0	3845	893	31	1	1657	1	CPNE5	6	36767835	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	325102	36767835	134347232	1938	27625										
FGD2	0	genome.wustl.edu	37	chr6	36983619	36983619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaggtgaggacccgcatcGatgtggccgggatgaaggta	16	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	36983619	36983619	G	A	SNP	FGD2	ENST00000274963	human	ensembl	69_37n	1	known	missense	c.1105	p.D369N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	241	0	0	103	24	18.75	-	-	-	A	36983619	G	A	36983619	3	1	275	1	0	0	0	0	1	0	0	0	5879	1058	37	1	1139	1	FGD2	6	36983619	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	215784	36983619	134131448	1939	27626										
RNF8	0	genome.wustl.edu	37	chr6	37336594	37336594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagtgaaatcacaggggaAaggtgaagtggccagtacac	14	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	37336594	37336594	A	G	SNP	RNF8	ENST00000373479	human	ensembl	69_37n	1	known	missense	c.575	p.K192R	0.000	pirsf_E3_Ub_ligase_RNF8	pfam_FHA_dom,pfam_Znf_C3HC4_RING-type,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pirsf_E3_Ub_ligase_RNF8,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	RNF8	HGNC	ENSG00000112130	116	0	0	94	19	16.81	-	-	-	G	37336594	A	G	37336594	3	3	275	1	0	0	0	0	1	0	0	0	13586	14	1	5	585	5	RNF8	6	37336594	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	352975	37336594	133778473	1940	27627										
DNAH8	0	genome.wustl.edu	37	chr6	38825467	38825467	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttgatagagtgaagttCgagactctaattaccatcca	8	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	38825467	38825467	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.5256	p.F1752	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	480	0	0	329	46	12.27	-	-	-	T	38825467	C	T	38825467	2	4	275	1	0	0	0	0	0	0	0	1	4642	883	31	1		1	DNAH8	6	38825467	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1488873	38825467	132289600	1941	27628										
DNAH8	0	genome.wustl.edu	37	chr6	38867567	38867567	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagatttcacgaataattCgaacgtcgtgtggaaatgca	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	38867567	38867567	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	nonsense	c.8428	p.R2810*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	568	0	0	372	145	27.88	-	-	-	T	38867567	C	T	38867567	4	4	275	1	0	0	0	0	0	1	0	0	4642	876	31	1	8658	1	DNAH8	6	38867567	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42100	38867567	132247500	1942	27629										
DNAH8	0	genome.wustl.edu	37	chr6	38891852	38891852	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaggaactatttgcttaaaGatcaatgggaaatggagttg	11	3	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	38891852	38891852	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.10225	p.D3409Y	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	1273	0	0	849	284	25.07	-	-	-	T	38891852	G	T	38891852	3	4	275	1	0	0	0	0	1	0	0	0	4642	942	33	2	10499	2	DNAH8	6	38891852	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24285	38891852	132223215	1943	27630										
DNAH8	0	genome.wustl.edu	37	chr6	38905788	38905788	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatctctcattggtgtacttCgaactaccaagcagacagca	7	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	38905788	38905788	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	nonsense	c.10951	p.R3651*	0.018	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	109	0	0	122	15	10.95	-	-	-	T	38905788	C	T	38905788	4	4	275	1	0	0	0	0	0	1	0	0	4642	876	31	1	11245	1	DNAH8	6	38905788	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13936	38905788	132209279	1944	27631										
KCNK5	0	genome.wustl.edu	37	chr6	39159242	39159242	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttcatggccttcttcccGatctgcttgatgaggtcgtt	10	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	39159242	39159242	G	A	SNP	KCNK5	ENST00000359534	human	ensembl	69_37n	-1	known	silent	c.924	p.I308	0.023	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626	27	0	0	12	4	25	-	-	-	A	39159242	G	A	39159242	2	1	275	1	0	0	0	0	0	0	0	1	8123	1048	37	1		1	KCNK5	6	39159242	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	253454	39159242	131955825	1945	27632										
KIF6	0	genome.wustl.edu	37	chr6	39552700	39552700	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggttaatttcttcattaaGaacagcttcattctttatga	7	6	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	39552700	39552700	G	A	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.1051	p.L351F	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	158	0	0	104	13	11.11	-	-	-	A	39552700	G	A	39552700	3	1	275	1	0	0	0	0	1	0	0	0	8360	942	33	2	1453	2	KIF6	6	39552700	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	393458	39552700	131562367	1946	27633										
DAAM2	0	genome.wustl.edu	37	chr6	39869080	39869080	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttctgtcccttgacagttCgccaaggccttgatgcactt	9	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	39869080	39869080	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	silent	c.2814	p.F938	0.130	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	105	0	0	43	18	29.51	-	-	-	T	39869080	C	T	39869080	2	4	275	1	0	0	0	0	0	0	0	1	4248	883	31	1		1	DAAM2	6	39869080	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	316380	39869080	131245987	1947	27634										
C6orf130	0	genome.wustl.edu	37	chr6	41036673	41036673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcataagttggcttgtgcGaagcccttttctttgtaatc	8	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	41036673	41036673	G	A	SNP	C6orf130	ENST00000424266	human	ensembl	69_37n	-1	known	missense	c.263	p.S88L	0.974	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	C6orf130	HGNC	ENSG00000124596	259	0	0	248	46	15.59	-	-	-	A	41036673	G	A	41036673	3	1	275	1	0	0	0	0	1	0	0	0	2350	1059	37	1	203	1	C6orf130	6	41036673	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1167593	41036673	130078394	1948	27635										
C6orf130	0	genome.wustl.edu	37	chr6	41039395	41039395	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atactgagtcgctatttccaGaatttaagtgtttcttcagc	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	41039395	41039395	G	T	SNP	C6orf130	ENST00000467234	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.777	-	-	-	no_errors	C6orf130	HGNC	ENSG00000124596	106	0	0	70	17	19.54	-	-	-	T	41039395	G	T	41039395	1	4	275	0	1	0	0	0	0	0	0	0	2350	957	33	2		2	C6orf130	6	41039395	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2722	41039395	130075672	1949	27636										
TREM2	0	genome.wustl.edu	37	chr6	41129194	41129194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacagcagccacaagttgtgCgtgctgaccacacgctggca	12	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	41129194	41129194	C	T	SNP	TREM2	ENST00000373113	human	ensembl	69_37n	-1	known	silent	c.198	p.T66	0.201	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	TREM2	HGNC	ENSG00000095970	201	0	0	112	24	17.52	-	-	-	T	41129194	C	T	41129194	2	4	275	1	0	0	0	0	0	0	0	1	16567	755	27	1		1	TREM2	6	41129194	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	89799	41129194	129985873	1950	27637										
TREML2	0	genome.wustl.edu	37	chr6	41160570	41160570	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttcttccaaaacccataGaccatgatcagcatcagcac	4	15	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	41160570	41160570	G	A	SNP	TREML2	ENST00000483722	human	ensembl	69_37n	-1	known	silent	c.855	p.V285	0.985	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	TREML2	HGNC	ENSG00000112195	355	0	0	173	75	30.24	-	-	-	A	41160570	G	A	41160570	2	1	275	1	0	0	0	0	0	0	0	1	16569	929	33	2		2	TREML2	6	41160570	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31376	41160570	129954497	1951	27638										
FRS3	0	genome.wustl.edu	37	chr6	41738487	41738487	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcgtaggagtctgagcttCgggcagggtgggtggtgggc	22	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	41738487	41738487	C	T	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.1349	p.R450Q	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	55	0	0	43	6	12.24	-	-	-	T	41738487	C	T	41738487	3	4	275	1	0	0	0	0	1	0	0	0	6111	884	31	1	133	1	FRS3	6	41738487	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	577917	41738487	129376580	1952	27639										
MRPL2	0	genome.wustl.edu	37	chr6	43023887	43023887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatgttttctgtggcgatgAtccagcgtttccggctgccc	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	43023887	43023887	A	C	SNP	MRPL2	ENST00000388752	human	ensembl	69_37n	-1	known	missense	c.452	p.I151S	1.000	pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_NA-bd_OB-fold-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like	-	no_errors	MRPL2	HGNC	ENSG00000112651	227	1	0.44	173	56	24.35	-	-	-	C	43023887	A	C	43023887	3	2	275	1	0	0	0	0	1	0	0	0	9857	333	12	5	481	5	MRPL2	6	43023887	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1285400	43023887	128091180	1953	27640										
CUL9	0	genome.wustl.edu	37	chr6	43155157	43155157	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagccaattttccagaatCtttggaagaacctggatgag	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	43155157	43155157	C	A	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.1561	p.L521I	0.998	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	361	0	0	236	99	29.55	-	-	-	A	43155157	C	A	43155157	3	1	275	1	0	0	0	0	1	0	0	0	4092	913	32	2	1579	2	CUL9	6	43155157	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131270	43155157	127959910	1954	27641										
ZNF318	0	genome.wustl.edu	37	chr6	43305691	43305691	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggcatatcccccagattCcccagggcagtaagctcctc	8	16	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	43305691	43305691	C	T	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	silent	c.6045	p.G2015	0.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	203	0	0	186	86	31.62	-	-	-	T	43305691	C	T	43305691	2	4	275	1	0	0	0	0	0	0	0	1	17932	842	30	2		2	ZNF318	6	43305691	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	150534	43305691	127809376	1955	27642										
ABCC10	0	genome.wustl.edu	37	chr6	43403974	43403974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaccttcatcagtcatctcGaagtgaaaaaggtttgttgg	10	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	43403974	43403974	G	A	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.1864	p.E622K	0.026	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	109	0	0	82	10	10.87	-	-	-	A	43403974	G	A	43403974	3	1	275	1	0	0	0	0	1	0	0	0	50	1059	37	1	1794	1	ABCC10	6	43403974	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98283	43403974	127711093	1956	27643										
CDC5L	0	genome.wustl.edu	37	chr6	44390475	44390475	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccgggtagaactcctcttCgagacaagttaaacattaat	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	44390475	44390475	C	T	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	nonsense	c.1333	p.R445*	0.999	pfam_DUF3351	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	291	0	0	254	45	15.05	-	-	-	T	44390475	C	T	44390475	4	4	275	1	0	0	0	0	0	1	0	0	3111	876	31	1	1371	1	CDC5L	6	44390475	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	986501	44390475	126724592	1957	27644										
ENPP4	0	genome.wustl.edu	37	chr6	46107841	46107841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactatgtggctaaacaattCgaacccaccagtcacctttg	6	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46107841	46107841	C	T	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.521	p.S174L	0.020	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	152	0	0	142	19	11.73	-	-	-	T	46107841	C	T	46107841	3	4	275	1	0	0	0	0	1	0	0	0	5169	893	31	1	523	1	ENPP4	6	46107841	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1717366	46107841	125007226	1958	27645										
CYP39A1	0	genome.wustl.edu	37	chr6	46554888	46554888	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtgcttctctaaatttgcCtttttccaacgttcctgtgg	8	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46554888	46554888	C	A	SNP	CYP39A1	ENST00000275016	human	ensembl	69_37n	-1	known	missense	c.1176	p.K392N	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP39A1	HGNC	ENSG00000146233	389	0	0	218	31	12.45	-	-	-	A	46554888	C	A	46554888	3	1	275	1	0	0	0	0	1	0	0	0	4208	680	24	4	245	4	CYP39A1	6	46554888	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	447047	46554888	124560179	1959	27646										
TDRD6	0	genome.wustl.edu	37	chr6	46659650	46659650	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaagaaagaagaaatttCtgctgagacacccttgaaaa	8	6	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46659650	46659650	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.3785	p.S1262F	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	40	0	0	2	5	71.43	-	-	-	T	46659650	C	T	46659650	3	4	275	1	0	0	0	0	1	0	0	0	15829	913	32	2	3787	2	TDRD6	6	46659650	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	104762	46659650	124455417	1960	27647										
TDRD6	0	genome.wustl.edu	37	chr6	46660805	46660805	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttcagaaggattatgttCtcaagagggaaatgactatt	9	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46660805	46660805	C	A	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.4940	p.S1647Y	0.021	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	163	0	0	92	19	17.12	-	-	-	A	46660805	C	A	46660805	3	1	275	1	0	0	0	0	1	0	0	0	15829	913	32	2	4942	2	TDRD6	6	46660805	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1155	46660805	124454262	1961	27648										
PLA2G7	0	genome.wustl.edu	37	chr6	46679243	46679243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaatgtacctgctcatttCgtatatgtgtctcctcctct	6	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46679243	46679243	C	T	SNP	PLA2G7	ENST00000274793	human	ensembl	69_37n	-1	known	missense	c.653	p.R218Q	0.495	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	-	no_errors	PLA2G7	HGNC	ENSG00000146070	898	0	0	796	104	11.54	-	-	-	T	46679243	C	T	46679243	3	4	275	1	0	0	0	0	1	0	0	0	12083	884	31	1	696	1	PLA2G7	6	46679243	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18438	46679243	124435824	1962	27649										
MEP1A	0	genome.wustl.edu	37	chr6	46793148	46793148	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaccatcacagccaagatCcctgagtttaactccattat	4	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46793148	46793148	C	A	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	silent	c.696	p.I232	1.000	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	226	0	0	130	30	18.75	-	-	-	A	46793148	C	A	46793148	2	1	275	1	0	0	0	0	0	0	0	1	9546	845	30	2		2	MEP1A	6	46793148	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	113905	46793148	124321919	1963	27650										
GPR116	0	genome.wustl.edu	37	chr6	46826511	46826511	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcatataagaagtccggttCttggtcaccgatttccacac	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46826511	46826511	C	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.3129	p.K1043N	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	138	1	0.72	83	31	27.19	-	-	-	A	46826511	C	A	46826511	3	1	275	1	0	0	0	0	1	0	0	0	6683	912	32	2	931	2	GPR116	6	46826511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33363	46826511	124288556	1964	27651										
GPR116	0	genome.wustl.edu	37	chr6	46826784	46826784	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttccagaagacacacttCgtttcgccgcctgaagggct	10	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46826784	46826784	C	T	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.2856	p.T952	0.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	171	0	0	132	29	18.01	-	-	-	T	46826784	C	T	46826784	2	4	275	1	0	0	0	0	0	0	0	1	6683	871	31	1		1	GPR116	6	46826784	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	273	46826784	124288283	1965	27652										
GPR110	0	genome.wustl.edu	37	chr6	46977497	46977497	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagtacattggcacgtcacGatgtcttgagtttcattcac	9	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	46977497	46977497	G	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	silent	c.1674	p.I558	0.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	170	0	0	147	55	26.96	-	-	-	A	46977497	G	A	46977497	2	1	275	1	0	0	0	0	0	0	0	1	6677	1048	37	1		1	GPR110	6	46977497	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	150713	46977497	124137570	1966	27653										
CD2AP	0	genome.wustl.edu	37	chr6	47471170	47471170	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatgttccctgacaatttCgttaaggtaagtattttcag	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	47471170	47471170	C	T	SNP	CD2AP	ENST00000359314	human	ensembl	69_37n	1	known	silent	c.159	p.F53	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	206	0	0	111	21	15.91	-	-	-	T	47471170	C	T	47471170	2	4	275	1	0	0	0	0	0	0	0	1	3023	883	31	1		1	CD2AP	6	47471170	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	493673	47471170	123643897	1967	27654										
GPR111	0	genome.wustl.edu	37	chr6	47649221	47649221	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaaaaatttcactttttCtatgagaattaatgatacca	5	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	47649221	47649221	C	A	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.926	p.S309Y	0.993	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	171	0	0	121	18	12.95	-	-	-	A	47649221	C	A	47649221	3	1	275	1	0	0	0	0	1	0	0	0	6678	913	32	2	740	2	GPR111	6	47649221	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178051	47649221	123465846	1968	27655										
CRISP1	0	genome.wustl.edu	37	chr6	49808641	49808641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgacaaacgtagagatatCgaggtgatccttgttggcgg	14	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	49808641	49808641	C	T	SNP	CRISP1	ENST00000335847	human	ensembl	69_37n	-1	known	missense	c.503	p.R168Q	0.000	pfam_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_Cysteine_rich_secretory,pfam_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	CRISP1	HGNC	ENSG00000124812	286	0	0	132	15	10.2	-	-	-	T	49808641	C	T	49808641	3	4	275	1	0	0	0	0	1	0	0	0	3909	884	31	1	258	1	CRISP1	6	49808641	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2159420	49808641	121306426	1969	27656										
PKHD1	0	genome.wustl.edu	37	chr6	51776705	51776705	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagccacagtggcctttaAaatatggtgctctccagcca	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	51776705	51776705	A	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.6382	p.L2128V	0.049	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	183	0	0	133	22	14.19	-	-	-	C	51776705	A	C	51776705	3	2	275	1	0	0	0	0	1	0	0	0	12045	11	1	5	5997	5	PKHD1	6	51776705	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1968064	51776705	119338362	1970	27657										
PKHD1	0	genome.wustl.edu	37	chr6	51910861	51910861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacaaggtccacacgtgttCgtagcaagtgtatagatcct	11	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	51910861	51910861	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.2533	p.E845K	0.977	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	212	0	0	126	41	24.55	-	-	-	T	51910861	C	T	51910861	3	4	275	1	0	0	0	0	1	0	0	0	12045	893	31	1	9906	1	PKHD1	6	51910861	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134156	51910861	119204206	1971	27658										
ICK	0	genome.wustl.edu	37	chr6	52878617	52878617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgctgtcgtgaagaaattCgtgtgtgtggcttggctggt	16	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	52878617	52878617	C	T	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	missense	c.995	p.R332Q	0.211	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	855	0	0	635	92	12.64	-	-	-	T	52878617	C	T	52878617	3	4	275	1	0	0	0	0	1	0	0	0	7538	884	31	1	927	1	ICK	6	52878617	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	967756	52878617	118236450	1972	27659										
FBXO9	0	genome.wustl.edu	37	chr6	52960341	52960341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actataaatacagatattttCgtcgtgtccctgtacaagaa	6	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	52960341	52960341	C	T	SNP	FBXO9	ENST00000244426	human	ensembl	69_37n	1	known	missense	c.1114	p.R372C	1.000	superfamily_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO9	HGNC	ENSG00000112146	182	0	0	145	25	14.53	-	-	-	T	52960341	C	T	52960341	3	4	275	1	0	0	0	0	1	0	0	0	5808	884	31	1	1163	1	FBXO9	6	52960341	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	81724	52960341	118154726	1973	27660										
GCM1	0	genome.wustl.edu	37	chr6	52993048	52993048	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcatatcattgttgcagtGatccaaacccaagtatgtca	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	52993048	52993048	G	T	SNP	GCM1	ENST00000259803	human	ensembl	69_37n	-1	known	missense	c.1267	p.H423N	0.787	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270	97	0	0	100	14	12.28	-	-	-	T	52993048	G	T	52993048	3	4	275	1	0	0	0	0	1	0	0	0	6347	1290	45	2	47	2	GCM1	6	52993048	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32707	52993048	118122019	1974	27661										
GCM1	0	genome.wustl.edu	37	chr6	52993142	52993142	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggatgagaggcgtaggtGaagagaaaggggtcttcttg	18	3	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	52993142	52993142	G	A	SNP	GCM1	ENST00000259803	human	ensembl	69_37n	-1	known	silent	c.1173	p.F391	0.001	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270	210	0	0	157	58	26.85	-	-	-	A	52993142	G	A	52993142	2	1	275	1	0	0	0	0	0	0	0	1	6347	1281	45	2		2	GCM1	6	52993142	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	94	52993142	118121925	1975	27662										
KLHL31	0	genome.wustl.edu	37	chr6	53519444	53519444	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttgttcaaatgtaagtttCataaactgatccgattctgc	6	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	53519444	53519444	C	A	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	missense	c.627	p.M209I	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	129	0	0	103	17	14.17	-	-	-	A	53519444	C	A	53519444	3	1	275	1	0	0	0	0	1	0	0	0	8438	826	29	2	1285	2	KLHL31	6	53519444	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	526302	53519444	117595623	1976	27663										
KLHL31	0	genome.wustl.edu	37	chr6	53519578	53519578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctcaacactcatctcccGtatcagaaaatcactgcaca	3	14	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	53519578	53519578	G	A	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	95	0	0	66	37	35.58	-	-	-	A	53519578	G	A	53519578	3	1	275	1	0	0	0	0	1	0	0	0	8438	1144	40	1	1419	1	KLHL31	6	53519578	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	134	53519578	117595489	1977	27664										
LRRC1	0	genome.wustl.edu	37	chr6	53747729	53747729	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagaatttaacatgtctttCtgtaaatgacatctcactac	4	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	53747729	53747729	C	T	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	missense	c.401	p.S134F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	319	0	0	219	26	10.61	-	-	-	T	53747729	C	T	53747729	3	4	275	1	0	0	0	0	1	0	0	0	9032	913	32	2	415	2	LRRC1	6	53747729	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	228151	53747729	117367338	1978	27665										
LRRC1	0	genome.wustl.edu	37	chr6	53764614	53764614	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttggaaagacttcctgaaGaaatcagtggcctgacttca	11	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	53764614	53764614	G	T	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	nonsense	c.712	p.E238*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	393	0	0	312	122	28.05	-	-	-	T	53764614	G	T	53764614	4	4	275	1	0	0	0	0	0	1	0	0	9032	943	33	2	742	2	LRRC1	6	53764614	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16885	53764614	117350453	1979	27666										
TINAG	0	genome.wustl.edu	37	chr6	54212306	54212306	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagggcttggtggtacctgaGaaaacgtgggtaaatagctg	15	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	54212306	54212306	G	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.890	p.R297I	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	268	0	0	109	47	30.13	-	-	-	T	54212306	G	T	54212306	3	4	275	1	0	0	0	0	1	0	0	0	16016	942	33	2	912	2	TINAG	6	54212306	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	447692	54212306	116902761	1980	27667										
FAM83B	0	genome.wustl.edu	37	chr6	54804590	54804590	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctttgatgaagaatttaGaactctctatgccagatcct	7	9	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	54804590	54804590	G	T	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.821	p.R274I	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	291	0	0	300	49	14.04	-	-	-	T	54804590	G	T	54804590	3	4	275	1	0	0	0	0	1	0	0	0	5679	942	33	2	835	2	FAM83B	6	54804590	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	592284	54804590	116310477	1981	27668										
FAM83B	0	genome.wustl.edu	37	chr6	54805725	54805725	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcagacagaaaatctaaaGaatcaacagactgagaatct	7	7	3	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	54805725	54805725	G	T	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.1956	p.K652N	0.027	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	96	0	0	82	12	12.77	-	-	-	T	54805725	G	T	54805725	3	4	275	1	0	0	0	0	1	0	0	0	5679	933	33	2	1970	2	FAM83B	6	54805725	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1135	54805725	116309342	1982	27669										
FAM83B	0	genome.wustl.edu	37	chr6	54806134	54806134	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccagataagaaagaaaatCtatccaaaaataaagcacct	4	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	54806134	54806134	C	A	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.2365	p.L789I	0.305	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	135	0	0	116	47	28.83	-	-	-	A	54806134	C	A	54806134	3	1	275	1	0	0	0	0	1	0	0	0	5679	912	32	2	2379	2	FAM83B	6	54806134	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	409	54806134	116308933	1983	27670										
GFRAL	0	genome.wustl.edu	37	chr6	55198737	55198737	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaaaaaatgtatcaataAatcaggtaatattttgtttt	6	2	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	55198737	55198737	A	C	SNP	GFRAL	ENST00000340465	human	ensembl	69_37n	1	known	missense	c.311	p.K104T	0.440	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871	297	0	0	194	30	13.39	-	-	-	C	55198737	A	C	55198737	3	2	275	1	0	0	0	0	1	0	0	0	6403	14	1	5	321	5	GFRAL	6	55198737	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	392603	55198737	115916330	1984	27671										
BMP5	0	genome.wustl.edu	37	chr6	55620352	55620352	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtggcagccacatgagcgTactaccatatttctatattt	7	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	55620352	55620352	T	C	SNP	BMP5	ENST00000370830	human	ensembl	69_37n	-1	known	silent	c.1344	p.V448	0.061	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175	120	0	0	60	25	28.09	-	-	-	C	55620352	T	C	55620352	2	2	275	1	0	0	0	0	0	0	0	1	1468	1625	57	5		5	BMP5	6	55620352	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	421615	55620352	115494715	1985	27672										
BMP5	0	genome.wustl.edu	37	chr6	55638912	55638912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattgcggttttgattttttCgtttgttggctgctctcacg	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	55638912	55638912	C	T	SNP	BMP5	ENST00000370830	human	ensembl	69_37n	-1	known	missense	c.962	p.R321Q	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175	212	1	0.47	142	41	22.4	-	-	-	T	55638912	C	T	55638912	3	4	275	1	0	0	0	0	1	0	0	0	1468	884	31	1	418	1	BMP5	6	55638912	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18560	55638912	115476155	1986	27673										
BMP5	0	genome.wustl.edu	37	chr6	55739516	55739516	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaatttccctttgtatttCccgtctttcgtggttccgta	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	55739516	55739516	C	A	SNP	BMP5	ENST00000370830	human	ensembl	69_37n	-1	known	nonsense	c.148	p.E50*	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175	594	0	0	404	48	10.6	-	-	-	A	55739516	C	A	55739516	4	1	275	1	0	0	0	0	0	1	0	0	1468	864	30	2	1244	2	BMP5	6	55739516	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	100604	55739516	115375551	1987	27674										
DST	0	genome.wustl.edu	37	chr6	56417926	56417926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgttgttcagtaattctaCcataccaaagtgttggtcca	8	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56417926	56417926	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.15571	p.V5191I	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	120	0	0	68	29	29.9	-	-	-	T	56417926	C	T	56417926	3	4	275	1	0	0	0	0	1	0	0	0	4818	507	18	4	7892	4	DST	6	56417926	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	678410	56417926	114697141	1988	27675										
DST	0	genome.wustl.edu	37	chr6	56462687	56462687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatgggtcccgttctgttCgattacctgtttgtgttttg	10	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56462687	56462687	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.11953	p.E3985K	0.880	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	573	1	0.17	301	111	26.88	-	-	-	T	56462687	C	T	56462687	3	4	275	1	0	0	0	0	1	0	0	0	4818	893	31	1	11566	1	DST	6	56462687	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44761	56462687	114652380	1989	27676										
DST	0	genome.wustl.edu	37	chr6	56471488	56471488	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagccgtctcatcattttcCtcttgcagtgtgtcgtagtc	9	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56471488	56471488	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.7839	p.E2613D	0.034	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	75	0	0	53	20	27.4	-	-	-	A	56471488	C	A	56471488	3	1	275	1	0	0	0	0	1	0	0	0	4818	696	24	4		4	DST	6	56471488	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8801	56471488	114643579	1990	27677										
DST	0	genome.wustl.edu	37	chr6	56472250	56472250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctattaaatcacttggaaaGttttgaatgtttttagaatg	7	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56472250	56472250	G	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.7077	p.N2359K	0.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	106	0	0	94	14	12.96	-	-	-	T	56472250	G	T	56472250	3	4	275	1	0	0	0	0	1	0	0	0	4818	1044	36	4		4	DST	6	56472250	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	762	56472250	114642817	1991	27678										
DST	0	genome.wustl.edu	37	chr6	56472895	56472895	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaaaacatcctcttcttgTctgtaatcatgaactgtgga	6	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56472895	56472895	T	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	silent	c.6432	p.R2144	0.016	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	96	0	0	62	15	19.48	-	-	-	C	56472895	T	C	56472895	2	2	275	1	0	0	0	0	0	0	0	1	4818	1682	58	5		5	DST	6	56472895	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	645	56472895	114642172	1992	27679										
DST	0	genome.wustl.edu	37	chr6	56473158	56473158	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattcatttgtaatcaattCttgctgcaaggaagatgatg	8	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56473158	56473158	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	nonsense	c.6169	p.E2057*	0.015	pfam_Plectin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	124	0	0	72	26	26.53	-	-	-	A	56473158	C	A	56473158	4	1	275	1	0	0	0	0	0	1	0	0	4818	928	32	2		2	DST	6	56473158	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	263	56473158	114641909	1993	27680										
DST	0	genome.wustl.edu	37	chr6	56480436	56480436	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctttatatgtcaactttCtttttgtctgagggcatatt	6	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56480436	56480436	C	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.7829	p.R2610I	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	381	0	0	269	85	24.01	-	-	-	A	56480436	C	A	56480436	3	1	275	1	0	0	0	0	1	0	0	0	4818	913	32	2	12570	2	DST	6	56480436	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7278	56480436	114634631	1994	27681										
DST	0	genome.wustl.edu	37	chr6	56481789	56481789	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattttgtctattatgattCtctcggccgctgaggcaaat	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56481789	56481789	C	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.6476	p.R2159I	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	111	0	0	60	21	25.93	-	-	-	A	56481789	C	A	56481789	3	1	275	1	0	0	0	0	1	0	0	0	4818	913	32	2	13923	2	DST	6	56481789	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1353	56481789	114633278	1995	27682										
DST	0	genome.wustl.edu	37	chr6	56483314	56483314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcaggttttcaacctcacGcttctgggctatcagctcat	7	13	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56483314	56483314	G	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.5518	p.R1840C	0.013	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	272	0	0	218	38	14.73	-	-	-	A	56483314	G	A	56483314	3	1	275	1	0	0	0	0	1	0	0	0	4818	1087	38	1	14885	1	DST	6	56483314	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1525	56483314	114631753	1996	27683										
DST	0	genome.wustl.edu	37	chr6	56485103	56485103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtctggtaaaggtgttttcCtccaactgattgcgaaaatt	9	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56485103	56485103	C	T	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	silent	c.3729	p.E1243	0.995	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	178	0	0	94	44	31.21	-	-	-	T	56485103	C	T	56485103	2	4	275	1	0	0	0	0	0	0	0	1	4818	680	24	4		4	DST	6	56485103	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1789	56485103	114629964	1997	27684										
DST	0	genome.wustl.edu	37	chr6	56494134	56494134	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtcaaaatcaaggtcccgTtctttatacgttttaaacat	5	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56494134	56494134	T	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	silent	c.4290	p.E1430	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	467	0	0	387	57	12.75	-	-	-	C	56494134	T	C	56494134	2	2	275	1	0	0	0	0	0	0	0	1	4818	1722	60	5		5	DST	6	56494134	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	9031	56494134	114620933	1998	27685										
DST	0	genome.wustl.edu	37	chr6	56496739	56496739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctctttccaggggagttCgaatctgtctaatcagccga	9	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56496739	56496739	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.3806	p.R1269Q	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	285	0	0	137	44	24.18	-	-	-	T	56496739	C	T	56496739	3	4	275	1	0	0	0	0	1	0	0	0	4818	884	31	1	18141	1	DST	6	56496739	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2605	56496739	114618328	1999	27686										
DST	0	genome.wustl.edu	37	chr6	56497760	56497760	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacttgggattcctggctatCttccagaaaatcttcaaaac	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56497760	56497760	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.3598	p.D1200Y	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	224	0	0	136	25	15.53	-	-	-	A	56497760	C	A	56497760	3	1	275	1	0	0	0	0	1	0	0	0	4818	913	32	2	18353	2	DST	6	56497760	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1021	56497760	114617307	2000	27687										
DST	0	genome.wustl.edu	37	chr6	56504572	56504572	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaggtgctgtcatttgaatCtataacatgagattaaaaag	9	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56504572	56504572	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	splice_site	c.2521-1	e19-1	1.000	-	-	-	no_errors	DST	HGNC	ENSG00000151914	140	0	0	110	17	13.39	-	-	-	T	56504572	C	T	56504572	5	4	275	1	0	0	0	0	0	0	1	0	4818	927	32	2	19463	2	DST	6	56504572	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6812	56504572	114610495	2001	27688										
DST	0	genome.wustl.edu	37	chr6	56505384	56505384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttccttaaggccataatttCgtcacgcagttttgcaaccc	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	56505384	56505384	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.1948	p.E650K	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	45	0	0	30	19	38.78	-	-	-	T	56505384	C	T	56505384	3	4	275	1	0	0	0	0	1	0	0	0	4818	893	31	1	20043	1	DST	6	56505384	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	812	56505384	114609683	2002	27689										
PHF3	0	genome.wustl.edu	37	chr6	64394228	64394228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagaatagaaggtgcagccGaaatagcggacaaattgaag	14	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	64394228	64394228	G	A	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.605	p.R202Q	0.734	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	162	1	0.61	107	38	26.21	-	-	-	A	64394228	G	A	64394228	3	1	275	1	0	0	0	0	1	0	0	0	11910	1058	37	1	615	1	PHF3	6	64394228	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7888844	64394228	106720839	2003	27690										
PHF3	0	genome.wustl.edu	37	chr6	64395606	64395606	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaaggaagaggataaactGaaactgaaaaaacctgagaa	9	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	64395606	64395606	G	T	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	silent	c.1983	p.L661	0.995	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	176	0	0	130	50	27.78	-	-	-	T	64395606	G	T	64395606	2	4	275	1	0	0	0	0	0	0	0	1	11910	1277	45	2		2	PHF3	6	64395606	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1378	64395606	106719461	2004	27691										
PHF3	0	genome.wustl.edu	37	chr6	64401881	64401881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacacacaacaaatgataGaaccaaatatatagatgata	4	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	64401881	64401881	G	A	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.2444	p.R815K	0.868	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	60	0	0	46	15	24.59	-	-	-	A	64401881	G	A	64401881	3	1	275	1	0	0	0	0	1	0	0	0	11910	942	33	2	2458	2	PHF3	6	64401881	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6275	64401881	106713186	2005	27692										
PHF3	0	genome.wustl.edu	37	chr6	64422457	64422457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctaggcaagcagcaggacGaagtcagcctgtaactactt	10	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	64422457	64422457	G	A	SNP	PHF3	ENST00000262043	human	ensembl	69_37n	1	known	missense	c.4973	p.R1658Q	0.979	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482	100	1	0.99	68	23	25.27	-	-	-	A	64422457	G	A	64422457	3	1	275	1	0	0	0	0	1	0	0	0	11910	1058	37	1	5031	1	PHF3	6	64422457	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20576	64422457	106692610	2006	27693										
EYS	0	genome.wustl.edu	37	chr6	65146121	65146121	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctaacagtagtattaatgCttttaaattttgcttcacca	4	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	65146121	65146121	C	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.5873	p.S1958I	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	284	0	0	163	45	21.63	-	-	-	A	65146121	C	A	65146121	3	1	275	1	0	0	0	0	1	0	0	0	5369	797	28	4	3470	4	EYS	6	65146121	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	723664	65146121	105968946	2007	27694										
EYS	0	genome.wustl.edu	37	chr6	65300259	65300259	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatttggaccattctgaaGaagtcttgacctctttttta	6	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	65300259	65300259	G	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.5501	p.S1834Y	0.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	244	1	0.41	143	26	15.38	-	-	-	T	65300259	G	T	65300259	3	4	275	1	0	0	0	0	1	0	0	0	5369	942	33	2	3850	2	EYS	6	65300259	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154138	65300259	105814808	2008	27695										
BAI3	0	genome.wustl.edu	37	chr6	69703748	69703748	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgttggatttaactcagaGaaaaaatttctatgcaggcg	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	69703748	69703748	G	T	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.1823	p.R608I	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	459	1	0.22	244	36	12.86	-	-	-	T	69703748	G	T	69703748	3	4	275	1	0	0	0	0	1	0	0	0	1304	942	33	2	1857	2	BAI3	6	69703748	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4403489	69703748	101411319	2009	27696										
BAI3	0	genome.wustl.edu	37	chr6	69703796	69703796	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgtctgtggagatcctgaGaaatgtgacagacacattta	11	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	69703796	69703796	G	T	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.1871	p.R624I	1.000	pfam_DUF3497,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	391	0	0	206	36	14.88	-	-	-	T	69703796	G	T	69703796	3	4	275	1	0	0	0	0	1	0	0	0	1304	942	33	2	1905	2	BAI3	6	69703796	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48	69703796	101411271	2010	27697										
BAI3	0	genome.wustl.edu	37	chr6	69949018	69949018	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttctctctctggctaggtAcatacgctctgagagatcca	8	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	69949018	69949018	A	G	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.2714	p.Y905C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	227	0	0	165	26	13.54	-	-	-	G	69949018	A	G	69949018	3	3	275	1	0	0	0	0	1	0	0	0	1304	391	14	5	2784	5	BAI3	6	69949018	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	245222	69949018	101166049	2011	27698										
FAM135A	0	genome.wustl.edu	37	chr6	71234912	71234912	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggtaaatctaaatctataGaaataacatttgaaaaggaa	6	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	71234912	71234912	G	T	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	nonsense	c.2125	p.E709*	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	59	0	0	31	8	20.51	-	-	-	T	71234912	G	T	71234912	4	4	275	1	0	0	0	0	0	1	0	0	5488	943	33	2	2253	2	FAM135A	6	71234912	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1285894	71234912	99880155	2012	27699										
FAM135A	0	genome.wustl.edu	37	chr6	71234993	71234993	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taactaaattacgaagtaatCtacctgccccttctacaaaa	3	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	71234993	71234993	C	A	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	missense	c.2206	p.L736I	0.150	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	73	0	0	53	7	11.67	-	-	-	A	71234993	C	A	71234993	3	1	275	1	0	0	0	0	1	0	0	0	5488	912	32	2	2334	2	FAM135A	6	71234993	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	81	71234993	99880074	2013	27700										
SMAP1	0	genome.wustl.edu	37	chr6	71483102	71483102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaaaagaagaaatactacGataaaaatgccatagctatt	6	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	71483102	71483102	G	A	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	missense	c.388	p.D130N	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	242	0	0	133	52	28.11	-	-	-	A	71483102	G	A	71483102	3	1	275	1	0	0	0	0	1	0	0	0	14855	1058	37	1	402	1	SMAP1	6	71483102	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248109	71483102	99631965	2014	27701										
OGFRL1	0	genome.wustl.edu	37	chr6	72011678	72011678	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatctcctgagaataacgaaGaaggtggaaatgataaccaa	9	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	72011678	72011678	G	T	SNP	OGFRL1	ENST00000370435	human	ensembl	69_37n	1	known	nonsense	c.1282	p.E428*	0.090	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900	114	0	0	115	18	13.53	-	-	-	T	72011678	G	T	72011678	4	4	275	1	0	0	0	0	0	1	0	0	10917	943	33	2	1308	2	OGFRL1	6	72011678	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	528576	72011678	99103389	2015	27702										
RIMS1	0	genome.wustl.edu	37	chr6	72960709	72960709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtctattcacatgtacatCgtagagattttagagaacga	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	72960709	72960709	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.2458	p.R820C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	348	1	0.29	196	26	11.66	-	-	-	T	72960709	C	T	72960709	3	4	275	1	0	0	0	0	1	0	0	0	13453	884	31	1	2675	1	RIMS1	6	72960709	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	949031	72960709	98154358	2016	27703										
KCNQ5	0	genome.wustl.edu	37	chr6	73904266	73904266	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagccctcgctttggcttCattccagatcccaccttttg	6	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	73904266	73904266	C	A	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	nonsense	c.1958	p.S653*	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	148	0	0	68	23	25.27	-	-	-	A	73904266	C	A	73904266	4	1	275	1	0	0	0	0	0	1	0	0	8140	838	29	2	2043	2	KCNQ5	6	73904266	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	943557	73904266	97210801	2017	27704										
KCNQ5	0	genome.wustl.edu	37	chr6	73904444	73904444	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttcagtgcccagactttCtacgcgcttagccctactat	8	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	73904444	73904444	C	A	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.2136	p.F712L	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	198	0	0	105	46	30.26	-	-	-	A	73904444	C	A	73904444	3	1	275	1	0	0	0	0	1	0	0	0	8140	912	32	2	2221	2	KCNQ5	6	73904444	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178	73904444	97210623	2018	27705										
MTO1	0	genome.wustl.edu	37	chr6	74176270	74176270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggagctgtagaagatcttaTtcttacagaaccagagcctg	11	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	74176270	74176270	T	C	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.476	p.I159T	0.898	pfam_GIDA-rel,tigrfam_GidA	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	570	0	0	522	185	26.13	-	-	-	C	74176270	T	C	74176270	3	2	275	1	0	0	0	0	1	0	0	0	10025	1493	52	5	486	5	MTO1	6	74176270	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	271826	74176270	96938797	2019	27706										
CD109	0	genome.wustl.edu	37	chr6	74440235	74440235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagcaagaagtgaagtttCgcattgttacactcttctca	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	74440235	74440235	C	T	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.445	p.R149C	1.000	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	156	0	0	126	14	10	-	-	-	T	74440235	C	T	74440235	3	4	275	1	0	0	0	0	1	0	0	0	2992	884	31	1	459	1	CD109	6	74440235	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	263965	74440235	96674832	2020	27707										
CD109	0	genome.wustl.edu	37	chr6	74512954	74512954	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtctaggttaccagagaGaacttctctatcagagggaa	11	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	74512954	74512954	G	T	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	nonsense	c.2890	p.E964*	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	252	0	0	220	34	13.39	-	-	-	T	74512954	G	T	74512954	4	4	275	1	0	0	0	0	0	1	0	0	2992	943	33	2	2984	2	CD109	6	74512954	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72719	74512954	96602113	2021	27708										
COL12A1	0	genome.wustl.edu	37	chr6	75825601	75825601	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttgtacagaagcaaaattCttttctgtcaggttgtatgc	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	75825601	75825601	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.7596	p.K2532N	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	263	0	0	150	21	12.28	-	-	-	A	75825601	C	A	75825601	3	1	275	1	0	0	0	0	1	0	0	0	3699	912	32	2	1667	2	COL12A1	6	75825601	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1312647	75825601	95289466	2022	27709										
TMEM30A	0	genome.wustl.edu	37	chr6	75968580	75968580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataagacgatacaacttgcGaaaagtaggtaatgctgcag	10	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	75968580	75968580	G	A	SNP	TMEM30A	ENST00000230461	human	ensembl	69_37n	-1	known	missense	c.808	p.R270C	1.000	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	-	no_errors	TMEM30A	HGNC	ENSG00000112697	185	0	0	83	46	35.66	-	-	-	A	75968580	G	A	75968580	3	1	275	1	0	0	0	0	1	0	0	0	16248	1058	37	1	285	1	TMEM30A	6	75968580	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	142979	75968580	95146487	2023	27710										
FILIP1	0	genome.wustl.edu	37	chr6	76023417	76023417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttttagcttcttccaaccGaaatctgtgtctcagttcag	6	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	76023417	76023417	G	A	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.2131	p.R711W	0.407	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	233	0	0	195	34	14.78	-	-	-	A	76023417	G	A	76023417	3	1	275	1	0	0	0	0	1	0	0	0	5940	1057	37	1	1518	1	FILIP1	6	76023417	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	54837	76023417	95091650	2024	27711										
FILIP1	0	genome.wustl.edu	37	chr6	76072489	76072489	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggtttctcatagacatcttCtcctatggatttctcctggg	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	76072489	76072489	C	A	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	nonsense	c.421	p.E141*	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	91	0	0	47	17	26.56	-	-	-	A	76072489	C	A	76072489	4	1	275	1	0	0	0	0	0	1	0	0	5940	922	32	2	3236	2	FILIP1	6	76072489	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49072	76072489	95042578	2025	27712										
SENP6	0	genome.wustl.edu	37	chr6	76425110	76425110	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtattttcagaatccaattCtcagttttgaactacctatg	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	76425110	76425110	C	T	SNP	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	missense	c.3139	p.L1047F	0.998	pfam_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	60	0	0	72	10	12.2	-	-	-	T	76425110	C	T	76425110	3	4	275	1	0	0	0	0	1	0	0	0	14138	913	32	2	3233	2	SENP6	6	76425110	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	352621	76425110	94689957	2026	27713										
IMPG1	0	genome.wustl.edu	37	chr6	76640679	76640679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgacccacctgcatggaGctccctttccctggaggacc	10	16	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	76640679	76640679	G	A	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.2234	p.A745V	0.218	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	154	0	0	84	27	24.32	-	-	-	A	76640679	G	A	76640679	3	1	275	1	0	0	0	0	1	0	0	0	7782	971	34	4	171	4	IMPG1	6	76640679	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	215569	76640679	94474388	2027	27714										
PHIP	0	genome.wustl.edu	37	chr6	79655835	79655835	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactcggttgcttctggttcGaaccacagaactagattctg	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	79655835	79655835	G	A	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	nonsense	c.4513	p.R1505*	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	882	0	0	626	231	26.95	-	-	-	A	79655835	G	A	79655835	4	1	275	1	0	0	0	0	0	1	0	0	11916	1066	37	1	964	1	PHIP	6	79655835	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3015156	79655835	91459232	2028	27715										
BCKDHB	0	genome.wustl.edu	37	chr6	80838892	80838892	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcagtaatatttggtgaaGatgttgcctttggtggagtc	12	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	80838892	80838892	G	T	SNP	BCKDHB	ENST00000320393	human	ensembl	69_37n	1	known	missense	c.289	p.D97Y	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	BCKDHB	HGNC	ENSG00000083123	927	0	0	529	85	13.84	-	-	-	T	80838892	G	T	80838892	3	4	275	1	0	0	0	0	1	0	0	0	1364	942	33	2	299	2	BCKDHB	6	80838892	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1183057	80838892	90276175	2029	27716										
IBTK	0	genome.wustl.edu	37	chr6	82943948	82943948	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgacaagccttctttatCttgaatatacagactaacac	5	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	82943948	82943948	C	A	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.346	p.D116Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	85	0	0	74	32	30.19	-	-	-	A	82943948	C	A	82943948	3	1	275	1	0	0	0	0	1	0	0	0	7530	913	32	2	3823	2	IBTK	6	82943948	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2105056	82943948	88171119	2030	27717										
DOPEY1	0	genome.wustl.edu	37	chr6	83877791	83877791	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttccctaataaggacatgAaactggagaaccacaaacca	6	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	83877791	83877791	A	C	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.7303	p.K2435Q	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	177	0	0	124	15	10.79	-	-	-	C	83877791	A	C	83877791	3	2	275	1	0	0	0	0	1	0	0	0	4742	247	9	5	7449	5	DOPEY1	6	83877791	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	933843	83877791	87237276	2031	27718										
PRSS35	0	genome.wustl.edu	37	chr6	84234348	84234348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcatcactcccctaaaataCgcccagatttgcctctggat	6	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	84234348	84234348	C	T	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	silent	c.1188	p.Y396	0.948	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	89	0	0	77	11	12.5	-	-	-	T	84234348	C	T	84234348	2	4	275	1	0	0	0	0	0	0	0	1	12704	547	19	1		1	PRSS35	6	84234348	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	356557	84234348	86880719	2032	27719										
KIAA1009	0	genome.wustl.edu	37	chr6	84913771	84913771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcatctttagtagtcaaCggtgcaccaacatactcatc	5	12	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	84913771	84913771	C	T	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	silent	c.615	p.P205	0.001	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	325	0	0	300	34	10.18	-	-	-	T	84913771	C	T	84913771	2	4	275	1	0	0	0	0	0	0	0	1	8255	523	19	1		1	KIAA1009	6	84913771	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	679423	84913771	86201296	2033	27720										
SNX14	0	genome.wustl.edu	37	chr6	86259519	86259519	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaatagtgcaattcatctCttcgacttctcaaagcaaca	4	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	86259519	86259519	C	A	SNP	SNX14	ENST00000314673	human	ensembl	69_37n	-1	known	missense	c.713	p.R238I	1.000	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX14	HGNC	ENSG00000135317	179	0	0	104	43	29.25	-	-	-	A	86259519	C	A	86259519	3	1	275	1	0	0	0	0	1	0	0	0	14974	913	32	2	2215	2	SNX14	6	86259519	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1345748	86259519	84855548	2034	27721										
SYNCRIP	0	genome.wustl.edu	37	chr6	86350232	86350232	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaccgtcttcattgaattCttttaaagcttcaatagctc	5	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	86350232	86350232	C	A	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	nonsense	c.199	p.E67*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	174	1	0.57	127	17	11.81	-	-	-	A	86350232	C	A	86350232	4	1	275	1	0	0	0	0	0	1	0	0	15536	922	32	2	1754	2	SYNCRIP	6	86350232	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90713	86350232	84764835	2035	27722										
ZNF292	0	genome.wustl.edu	37	chr6	87928382	87928382	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagctactctagctcaagaGactggggtgtggaaaaaccc	11	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87928382	87928382	G	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.471	p.E157D	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	319	0	0	178	31	14.83	-	-	-	T	87928382	G	T	87928382	3	4	275	1	0	0	0	0	1	0	0	0	17922	933	33	2	485	2	ZNF292	6	87928382	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1578150	87928382	83186685	2036	27723										
ZNF292	0	genome.wustl.edu	37	chr6	87964840	87964840	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttctatgaatgggctttCtggtggagttggtgctaatt	12	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87964840	87964840	C	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.1493	p.S498Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	597	1	0.17	423	59	12.24	-	-	-	A	87964840	C	A	87964840	3	1	275	1	0	0	0	0	1	0	0	0	17922	913	32	2	1523	2	ZNF292	6	87964840	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36458	87964840	83150227	2037	27724										
ZNF292	0	genome.wustl.edu	37	chr6	87969164	87969164	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgattcttgaaattaagaaGaatcaattgaaatttgctcc	6	5	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87969164	87969164	G	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.5817	p.K1939N	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	45	0	0	38	5	11.63	-	-	-	T	87969164	G	T	87969164	3	4	275	1	0	0	0	0	1	0	0	0	17922	933	33	2	5847	2	ZNF292	6	87969164	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4324	87969164	83145903	2038	27725										
ZNF292	0	genome.wustl.edu	37	chr6	87969864	87969864	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaaactttgaaagaatttCgatgtcaggtaagtgactgt	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87969864	87969864	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	nonsense	c.6517	p.R2173*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	158	0	0	110	23	17.16	-	-	-	T	87969864	C	T	87969864	4	4	275	1	0	0	0	0	0	1	0	0	17922	876	31	1	6547	1	ZNF292	6	87969864	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	700	87969864	83145203	2039	27726										
ZNF292	0	genome.wustl.edu	37	chr6	87969889	87969889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggtaagtgactgttctcGaattttccaagcaattactg	8	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87969889	87969889	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.6542	p.R2181Q	0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	159	0	0	95	34	26.36	-	-	-	A	87969889	G	A	87969889	3	1	275	1	0	0	0	0	1	0	0	0	17922	1058	37	1	6572	1	ZNF292	6	87969889	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25	87969889	83145178	2040	27727										
ZNF292	0	genome.wustl.edu	37	chr6	87971192	87971192	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatactgacaaagaccatccGaatactggaaacaaaaaagg	7	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	87971192	87971192	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	silent	c.7845	p.P2615	0.891	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	125	0	0	77	24	23.76	-	-	-	A	87971192	G	A	87971192	2	1	275	1	0	0	0	0	0	0	0	1	17922	1045	37	1		1	ZNF292	6	87971192	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1303	87971192	83143875	2041	27728										
SPACA1	0	genome.wustl.edu	37	chr6	88763693	88763693	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatgtcgtcaaagaagtaGaattcggaatgtgcaccgtt	12	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	88763693	88763693	G	T	SNP	SPACA1	ENST00000237201	human	ensembl	69_37n	1	known	nonsense	c.238	p.E80*	1.000	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	208	1	0.48	119	24	16.78	-	-	-	T	88763693	G	T	88763693	4	4	275	1	0	0	0	0	0	1	0	0	15061	943	33	2	244	2	SPACA1	6	88763693	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	792501	88763693	82351374	2042	27729										
GABRR1	0	genome.wustl.edu	37	chr6	89907905	89907905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgaggttgttggtgcttgGaaaagacagcctctcgtcct	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	89907905	89907905	G	A	SNP	GABRR1	ENST00000454853	human	ensembl	69_37n	-1	known	missense	c.406	p.P136S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276	245	0	0	158	21	11.73	-	-	-	A	89907905	G	A	89907905	3	1	275	1	0	0	0	0	1	0	0	0	6225	1174	41	2	1057	2	GABRR1	6	89907905	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1144212	89907905	81207162	2043	27730										
MDN1	0	genome.wustl.edu	37	chr6	90383867	90383867	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactgctgtctaattttgtcGacgtcagctttcactgtttt	8	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	90383867	90383867	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.13203	p.V4401	0.120	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	135	0	0	100	32	24.06	-	-	-	A	90383867	G	A	90383867	2	1	275	1	0	0	0	0	0	0	0	1	9486	1045	37	1		1	MDN1	6	90383867	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	475962	90383867	80731200	2044	27731										
CASP8AP2	0	genome.wustl.edu	37	chr6	90572336	90572336	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagactgaaagcaaaagttCgaagtttaaaagtaactcag	8	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	90572336	90572336	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.924	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	49	0	0	53	22	29.33	-	-	-	T	90572336	C	T	90572336	1	4	275	0	1	0	0	0	0	0	0	0	2703	893	31	1		1	CASP8AP2	6	90572336	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	188469	90572336	80542731	2045	27732										
GJA10	0	genome.wustl.edu	37	chr6	90604299	90604299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttccgaatgctggtacttCgtgtggctgctgaggatgtc	13	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	90604299	90604299	C	T	SNP	GJA10	ENST00000369352	human	ensembl	69_37n	1	known	missense	c.112	p.R38C	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355	277	0	0	175	28	13.73	-	-	-	T	90604299	C	T	90604299	3	4	275	1	0	0	0	0	1	0	0	0	6453	884	31	1	114	1	GJA10	6	90604299	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31963	90604299	80510768	2046	27733										
MAP3K7	0	genome.wustl.edu	37	chr6	91261814	91261814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatttcctccattgaagggCgctgggaaggatctttagac	11	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	91261814	91261814	C	T	SNP	MAP3K7	ENST00000369329	human	ensembl	69_37n	-1	known	missense	c.821	p.R274H	1.000	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341	465	0	0	266	67	20	-	-	-	T	91261814	C	T	91261814	3	4	275	1	0	0	0	0	1	0	0	0	9326	768	27	1	1039	1	MAP3K7	6	91261814	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	657515	91261814	79853253	2047	27734										
FHL5	0	genome.wustl.edu	37	chr6	97063544	97063544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggcatagcgaatgctttAactgcgggaaatgctctgtc	12	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	97063544	97063544	A	C	SNP	FHL5	ENST00000326771	human	ensembl	69_37n	1	known	missense	c.751	p.N251H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214	375	1	0.27	265	33	11.07	-	-	-	C	97063544	A	C	97063544	3	2	275	1	0	0	0	0	1	0	0	0	5927	362	13	5	769	5	FHL5	6	97063544	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	5801730	97063544	74051523	2048	27735										
PRDM13	0	genome.wustl.edu	37	chr6	100057144	100057144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actccttggctcagtggttcGacatccccaccacagcgact	8	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	100057144	100057144	G	A	SNP	PRDM13	ENST00000369214	human	ensembl	69_37n	1	known	missense	c.388	p.D130N	1.000	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238	115	0	0	61	14	18.67	-	-	-	A	100057144	G	A	100057144	3	1	275	1	0	0	0	0	1	0	0	0	12535	1058	37	1	368	1	PRDM13	6	100057144	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2993600	100057144	71057923	2049	27736										
GRIK2	0	genome.wustl.edu	37	chr6	102134167	102134167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccatcattgaaaagtggtCgatggaacgattgcaggcac	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	102134167	102134167	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.890	p.S297L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	234	1	0.43	151	23	13.14	-	-	-	T	102134167	C	T	102134167	3	4	275	1	0	0	0	0	1	0	0	0	6825	893	31	1	912	1	GRIK2	6	102134167	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2077023	102134167	68980900	2050	27737										
LIN28B	0	genome.wustl.edu	37	chr6	105526352	105526352	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtctacctcctcagccaaaGaagtgccattactgtcagag	8	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	105526352	105526352	G	T	SNP	LIN28B	ENST00000345080	human	ensembl	69_37n	1	known	missense	c.447	p.K149N	1.000	superfamily_Znf_CCHC	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,prints_CSP_DNA-bd,pfscan_Znf_CCHC	-	no_errors	LIN28B	HGNC	ENSG00000187772	171	0	0	107	56	34.36	-	-	-	T	105526352	G	T	105526352	3	4	275	1	0	0	0	0	1	0	0	0	8862	933	33	2	461	2	LIN28B	6	105526352	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3392185	105526352	65588715	2051	27738										
BVES	0	genome.wustl.edu	37	chr6	105573279	105573279	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacttactttcccttcaagaGaatactcagacggtcatcaa	5	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	105573279	105573279	G	T	SNP	BVES	ENST00000314641	human	ensembl	69_37n	-1	known	missense	c.526	p.L176I	0.998	pfam_Popeye_prot,superfamily_cNMP-bd-like	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276	136	1	0.73	93	12	11.43	-	-	-	T	105573279	G	T	105573279	3	4	275	1	0	0	0	0	1	0	0	0	1584	942	33	2	576	2	BVES	6	105573279	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46927	105573279	65541788	2052	27739										
POPDC3	0	genome.wustl.edu	37	chr6	105609644	105609644	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagacataaaggagcccgaaGaatccactgccacccatgaa	8	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	105609644	105609644	G	T	SNP	POPDC3	ENST00000254765	human	ensembl	69_37n	-1	known	missense	c.141	p.F47L	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429	192	0	0	201	37	15.55	-	-	-	T	105609644	G	T	105609644	3	4	275	1	0	0	0	0	1	0	0	0	12330	933	33	2	746	2	POPDC3	6	105609644	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36365	105609644	65505423	2053	27740										
PDSS2	0	genome.wustl.edu	37	chr6	107531712	107531712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagactacaggagctgagttTagattaaaagtcatggagtc	11	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	107531712	107531712	T	C	SNP	PDSS2	ENST00000369037	human	ensembl	69_37n	-1	known	silent	c.939	p.L313	0.533	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS2	HGNC	ENSG00000164494	124	0	0	78	41	34.45	-	-	-	C	107531712	T	C	107531712	2	2	275	1	0	0	0	0	0	0	0	1	11767	1741	61	5		5	PDSS2	6	107531712	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1922068	107531712	63583355	2054	27741										
SOBP	0	genome.wustl.edu	37	chr6	107811910	107811910	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagggagatcaatgaggaGatgaaggtattttttgatct	12	2	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	107811910	107811910	G	A	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	1	known	silent	c.90	p.E30	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	180	0	0	95	34	26.36	-	-	-	A	107811910	G	A	107811910	2	1	275	1	0	0	0	0	0	0	0	1	15001	933	33	2		2	SOBP	6	107811910	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	280198	107811910	63303157	2055	27742										
SCML4	0	genome.wustl.edu	37	chr6	108070954	108070954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgagggatggagctgaggtCgggctctggggtactccgcg	19	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	108070954	108070954	C	T	SNP	SCML4	ENST00000369021	human	ensembl	69_37n	-1	known	missense	c.133	p.D45N	0.999	NULL	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285	318	0	0	234	90	27.69	-	-	-	T	108070954	C	T	108070954	3	4	275	1	0	0	0	0	1	0	0	0	13999	884	31	1	1048	1	SCML4	6	108070954	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	259044	108070954	63044113	2056	27743										
FOXO3	0	genome.wustl.edu	37	chr6	108985201	108985201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgactgaaaacctcatggacGacctgctggataacatcacg	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	108985201	108985201	G	A	SNP	FOXO3	ENST00000343882	human	ensembl	69_37n	1	known	missense	c.1165	p.D389N	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689	44	0	0	24	16	40	-	-	-	A	108985201	G	A	108985201	3	1	275	1	0	0	0	0	1	0	0	0	6072	1058	37	1	1171	1	FOXO3	6	108985201	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	914247	108985201	62129866	2057	27744										
SMPD2	0	genome.wustl.edu	37	chr6	109763923	109763923	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaagagctggtgatggaaGaactcccgcctcaccaacct	12	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	109763923	109763923	G	T	SNP	SMPD2	ENST00000458487	human	ensembl	69_37n	1	putative	missense	c.150	p.K50N	0.010	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMPD2	HGNC	ENSG00000135587	44	0	0	31	4	11.43	-	-	-	T	109763923	G	T	109763923	3	4	275	1	0	0	0	0	1	0	0	0	14894	957	33	2		2	SMPD2	6	109763923	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	778722	109763923	61351144	2058	27745										
ZBTB24	0	genome.wustl.edu	37	chr6	109788926	109788926	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccacagatttcacaagtaaAtggcttctcacctaaaaaaa	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	109788926	109788926	A	C	SNP	ZBTB24	ENST00000230122	human	ensembl	69_37n	-1	known	missense	c.1300	p.F434V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365	336	0	0	290	49	14.45	-	-	-	C	109788926	A	C	109788926	3	2	275	1	0	0	0	0	1	0	0	0	17627	101	4	5	801	5	ZBTB24	6	109788926	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	25003	109788926	61326141	2059	27746										
AKD1	0	genome.wustl.edu	37	chr6	109816583	109816583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaagactagtaagaagtatCggttcccttaatgggggaag	14	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	109816583	109816583	C	T	SNP	AKD1	ENST00000470564	human	ensembl	69_37n	-1	novel	missense	c.1889	p.R630Q	0.037	NULL	pfam_Adenylate_kin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AKD1	HGNC	ENSG00000155085	927	0	0	464	144	23.61	-	-	-	T	109816583	C	T	109816583	3	4	275	1	0	0	0	0	1	0	0	0	460	871	31	1	371	1	AKD1	6	109816583	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27657	109816583	61298484	2060	27747										
AKD1	0	genome.wustl.edu	37	chr6	109827867	109827867	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtacattacctttgttcatTttctttttctaggagcaatc	5	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	109827867	109827867	T	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.4618	p.N1540H	0.005	pfam_Adenylate_kin,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	157	0	0	161	18	10.06	-	-	-	G	109827867	T	G	109827867	3	3	275	1	0	0	0	0	1	0	0	0	460	1841	64	5	1149	5	AKD1	6	109827867	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	11284	109827867	61287200	2061	27748										
SLC22A16	0	genome.wustl.edu	37	chr6	110763920	110763920	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagacgcccatgtccgagacTtcatgccaatgaattccatc	7	14	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	110763920	110763920	T	G	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.710	p.K237T	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	453	0	0	245	91	27.08	-	-	-	G	110763920	T	G	110763920	3	3	275	1	0	0	0	0	1	0	0	0	14536	1609	56	5	1043	5	SLC22A16	6	110763920	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	936053	110763920	60351147	2062	27749										
SLC16A10	0	genome.wustl.edu	37	chr6	111527814	111527814	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgaaacatgtaaatgaaaGatttcaagatgaaaaaaata	7	2	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	111527814	111527814	G	T	SNP	SLC16A10	ENST00000368851	human	ensembl	69_37n	1	known	missense	c.962	p.R321I	0.955	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394	248	0	0	176	65	26.97	-	-	-	T	111527814	G	T	111527814	3	4	275	1	0	0	0	0	1	0	0	0	14492	942	33	2	976	2	SLC16A10	6	111527814	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	763894	111527814	59587253	2063	27750										
SLC16A10	0	genome.wustl.edu	37	chr6	111543214	111543214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcccttctcagggttacttCgtgacaaactgggctcctat	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	111543214	111543214	C	T	SNP	SLC16A10	ENST00000368851	human	ensembl	69_37n	1	known	missense	c.1324	p.R442C	0.259	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394	255	0	0	169	26	13.33	-	-	-	T	111543214	C	T	111543214	3	4	275	1	0	0	0	0	1	0	0	0	14492	884	31	1	1346	1	SLC16A10	6	111543214	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15400	111543214	59571853	2064	27751										
REV3L	0	genome.wustl.edu	37	chr6	111665171	111665171	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaccagtctgacaagactcGaaaggtaaagaggggaaaac	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	111665171	111665171	G	A	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	nonsense	c.7495	p.R2499*	1.000	superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	284	0	0	211	35	14.23	-	-	-	A	111665171	G	A	111665171	4	1	275	1	0	0	0	0	0	1	0	0	13323	1066	37	1	1945	1	REV3L	6	111665171	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	121957	111665171	59449896	2065	27752										
REV3L	0	genome.wustl.edu	37	chr6	111693940	111693940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttcagaatgttagcagttCgaggggtgaagctgccattt	13	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	111693940	111693940	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.5618	p.R1873Q	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	291	0	0	156	58	26.85	-	-	-	T	111693940	C	T	111693940	3	4	275	1	0	0	0	0	1	0	0	0	13323	884	31	1	3854	1	REV3L	6	111693940	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28769	111693940	59421127	2066	27753										
REV3L	0	genome.wustl.edu	37	chr6	111696988	111696988	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaggattattttgtataAaattatcttttgtggatcca	6	4	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	111696988	111696988	A	C	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.2570	p.F857C	0.604	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	167	0	0	133	19	12.5	-	-	-	C	111696988	A	C	111696988	3	2	275	1	0	0	0	0	1	0	0	0	13323	14	1	5	6902	5	REV3L	6	111696988	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	3048	111696988	59418079	2067	27754										
HS3ST5	0	genome.wustl.edu	37	chr6	114378693	114378693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggttccgtgatgaggcGatctccatcgacgacatgaa	12	10	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	114378693	114378693	G	A	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	missense	c.769	p.R257C	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	323	0	0	251	38	13.1	-	-	-	A	114378693	G	A	114378693	3	1	275	1	0	0	0	0	1	0	0	0	7419	1058	37	1	275	1	HS3ST5	6	114378693	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2681705	114378693	56736374	2068	27755										
DSE	0	genome.wustl.edu	37	chr6	116757777	116757777	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcacaggtcattgctgatCgtcacaaaattctgtttgac	8	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	116757777	116757777	C	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.2203	p.R735S	0.988	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	52	0	0	41	16	28.07	-	-	-	A	116757777	C	A	116757777	3	1	275	1	0	0	0	0	1	0	0	0	4809	884	31	3	2164	3	DSE	6	116757777	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2379084	116757777	54357290	2069	27756										
RSPH4A	0	genome.wustl.edu	37	chr6	116951691	116951691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaatccaacctttggcctgGagcatatgccttctccaatg	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	116951691	116951691	G	A	SNP	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	missense	c.1892	p.G631E	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	272	0	0	170	66	27.97	-	-	-	A	116951691	G	A	116951691	3	1	275	1	0	0	0	0	1	0	0	0	13792	1175	41	2	1910	2	RSPH4A	6	116951691	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	193914	116951691	54163376	2070	27757										
ZUFSP	0	genome.wustl.edu	37	chr6	116977936	116977936	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaattcagatggaggcattCttcccctatttacttctatc	6	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	116977936	116977936	C	T	SNP	ZUFSP	ENST00000368576	human	ensembl	69_37n	-1	known	missense	c.872	p.R291K	1.000	NULL	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975	535	0	0	395	45	10.23	-	-	-	T	116977936	C	T	116977936	3	4	275	1	0	0	0	0	1	0	0	0	18337	913	32	2	888	2	ZUFSP	6	116977936	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26245	116977936	54137131	2071	27758										
RFX6	0	genome.wustl.edu	37	chr6	117237188	117237188	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggttgatacgctcataatGatgtacaaaactcactgcca	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	117237188	117237188	G	T	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.798	p.M266I	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	329	1	0.3	188	25	11.74	-	-	-	T	117237188	G	T	117237188	3	4	275	1	0	0	0	0	1	0	0	0	13350	1290	45	2	828	2	RFX6	6	117237188	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	259252	117237188	53877879	2072	27759										
RFX6	0	genome.wustl.edu	37	chr6	117237424	117237424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatctccttcccctgctcGaaaatcctgttatcattgat	4	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	117237424	117237424	G	A	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.919	p.E307K	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	301	0	0	153	63	29.17	-	-	-	A	117237424	G	A	117237424	3	1	275	1	0	0	0	0	1	0	0	0	13350	1059	37	1	953	1	RFX6	6	117237424	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	236	117237424	53877643	2073	27760										
RFX6	0	genome.wustl.edu	37	chr6	117245849	117245849	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggttcttttcatttgattCgaatgcttctcgatgaatac	7	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	117245849	117245849	C	T	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	nonsense	c.1573	p.R525*	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	282	0	0	170	64	27.35	-	-	-	T	117245849	C	T	117245849	4	4	275	1	0	0	0	0	0	1	0	0	13350	876	31	1	1631	1	RFX6	6	117245849	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8425	117245849	53869218	2074	27761										
ROS1	0	genome.wustl.edu	37	chr6	117662396	117662396	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaccaaggaataaggttTctctggtgtgttaaacattt	10	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	117662396	117662396	T	G	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.4981	p.K1661Q	0.955	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	334	0	0	222	82	26.97	-	-	-	G	117662396	T	G	117662396	3	3	275	1	0	0	0	0	1	0	0	0	13617	1792	62	5	2118	5	ROS1	6	117662396	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	416547	117662396	53452671	2075	27762										
FAM184A	0	genome.wustl.edu	37	chr6	119297138	119297138	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattttagcagctgccaattCttgatgatgattatgccgta	8	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	119297138	119297138	C	A	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	nonsense	c.2527	p.E843*	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	153	0	0	99	34	25.56	-	-	-	A	119297138	C	A	119297138	4	1	275	1	0	0	0	0	0	1	0	0	5552	922	32	2	923	2	FAM184A	6	119297138	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1634742	119297138	51817929	2076	27763										
FAM184A	0	genome.wustl.edu	37	chr6	119345663	119345663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatttccttctaatctcttCgacttctctagacatggtca	4	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	119345663	119345663	C	T	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	missense	c.475	p.E159K	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	131	0	0	112	26	18.84	-	-	-	T	119345663	C	T	119345663	3	4	275	1	0	0	0	0	1	0	0	0	5552	893	31	1	3015	1	FAM184A	6	119345663	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48525	119345663	51769404	2077	27764										
MAN1A1	0	genome.wustl.edu	37	chr6	119510834	119510834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacatgtactcacatgttCgattatatgattcatgacaa	5	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	119510834	119510834	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.1541	p.R514Q	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	159	0	0	106	21	16.41	-	-	-	T	119510834	C	T	119510834	3	4	275	1	0	0	0	0	1	0	0	0	9281	884	31	1	436	1	MAN1A1	6	119510834	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165171	119510834	51604233	2078	27765										
MAN1A1	0	genome.wustl.edu	37	chr6	119628106	119628106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgatataggtttgagttCatttaatccccaggcataac	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	119628106	119628106	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.655	p.E219K	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	444	0	0	254	37	12.71	-	-	-	T	119628106	C	T	119628106	3	4	275	1	0	0	0	0	1	0	0	0	9281	835	29	2	1350	2	MAN1A1	6	119628106	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117272	119628106	51486961	2079	27766										
C6orf170	0	genome.wustl.edu	37	chr6	121482199	121482199	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataagccatcaattataaaGtccctgaaaaaataaatata	4	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	121482199	121482199	G	A	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	silent	c.2697	p.D899	0.011	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	216	0	0	159	26	13.98	-	-	-	A	121482199	G	A	121482199	2	1	275	1	0	0	0	0	0	0	0	1	2365	1020	36	4		4	C6orf170	6	121482199	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1854093	121482199	49632868	2080	27767										
GJA1	0	genome.wustl.edu	37	chr6	121768541	121768541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatggattcagcttgagtgCtgtttacacttgcaaaagag	10	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	121768541	121768541	C	A	SNP	GJA1	ENST00000282561	human	ensembl	69_37n	1	known	missense	c.548	p.A183D	0.997	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661	194	0	0	197	30	13.16	-	-	-	A	121768541	C	A	121768541	3	1	275	1	0	0	0	0	1	0	0	0	6452	797	28	4	550	4	GJA1	6	121768541	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	286342	121768541	49346526	2081	27768										
GJA1	0	genome.wustl.edu	37	chr6	121768949	121768949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacagtgcagaacaaaatcGaatggggcaggcgggaagca	14	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	121768949	121768949	G	A	SNP	GJA1	ENST00000282561	human	ensembl	69_37n	1	known	missense	c.956	p.R319Q	0.997	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661	123	0	0	120	16	11.59	-	-	-	A	121768949	G	A	121768949	3	1	275	1	0	0	0	0	1	0	0	0	6452	1058	37	1	958	1	GJA1	6	121768949	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	408	121768949	49346118	2082	27769										
HEY2	0	genome.wustl.edu	37	chr6	126073205	126073205	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taacagtttatctgagttgaGaagacttgtgccaactgctt	9	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	126073205	126073205	G	A	SNP	HEY2	ENST00000368364	human	ensembl	69_37n	1	known	missense	c.215	p.R72K	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd,prints_Antifreeze_1	-	no_errors	HEY2	HGNC	ENSG00000135547	94	0	0	30	12	28.57	-	-	-	A	126073205	G	A	126073205	3	1	275	1	0	0	0	0	1	0	0	0	7130	942	33	2	225	2	HEY2	6	126073205	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4304256	126073205	45041862	2083	27770										
RNF146	0	genome.wustl.edu	37	chr6	127607966	127607966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcttcatggcttggaaagCggtgtgctctttgtcgacaa	13	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	127607966	127607966	C	T	SNP	RNF146	ENST00000368314	human	ensembl	69_37n	1	known	missense	c.208	p.R70W	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518	298	0	0	165	27	13.85	-	-	-	T	127607966	C	T	127607966	3	4	275	1	0	0	0	0	1	0	0	0	13534	759	27	1	207	1	RNF146	6	127607966	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1534761	127607966	43507101	2084	27771										
ECHDC1	0	genome.wustl.edu	37	chr6	127652066	127652066	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgaagtgtttttttcacTtcttcctcataaaatccatg	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	127652066	127652066	T	G	SNP	ECHDC1	ENST00000531967	human	ensembl	69_37n	-1	known	missense	c.126	p.E42D	0.013	NULL	pfam_Crotonase_core	-	no_errors	ECHDC1	HGNC	ENSG00000093144	264	0	0	170	27	13.71	-	-	-	G	127652066	T	G	127652066	3	3	275	1	0	0	0	0	1	0	0	0	4928	1606	56	5	817	5	ECHDC1	6	127652066	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	44100	127652066	43463001	2085	27772										
C6orf58	0	genome.wustl.edu	37	chr6	127898483	127898483	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggagaacagcatgtacatTattaatccctgggtatacct	9	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	127898483	127898483	T	G	SNP	C6orf58	ENST00000329722	human	ensembl	69_37n	1	known	missense	c.153	p.I51M	0.064	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530	173	0	0	126	50	28.41	-	-	-	G	127898483	T	G	127898483	3	3	275	1	0	0	0	0	1	0	0	0	2389	1742	61	5	155	5	C6orf58	6	127898483	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	246417	127898483	43216584	2086	27773										
C6orf58	0	genome.wustl.edu	37	chr6	127911368	127911368	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggcatgccaccacgaattCttcttaatactgatgtagcc	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	127911368	127911368	C	A	SNP	C6orf58	ENST00000329722	human	ensembl	69_37n	1	known	missense	c.811	p.L271I	0.171	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530	248	0	0	151	22	12.72	-	-	-	A	127911368	C	A	127911368	3	1	275	1	0	0	0	0	1	0	0	0	2389	913	32	2	829	2	C6orf58	6	127911368	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12885	127911368	43203699	2087	27774										
THEMIS	0	genome.wustl.edu	37	chr6	128135035	128135035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcagtgatgtctttgacttCgacatctagactggggagga	12	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	128135035	128135035	C	T	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.751	p.E251K	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	249	0	0	234	32	12.03	-	-	-	T	128135035	C	T	128135035	3	4	275	1	0	0	0	0	1	0	0	0	15955	893	31	1	1307	1	THEMIS	6	128135035	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	223667	128135035	42980032	2088	27775										
THEMIS	0	genome.wustl.edu	37	chr6	128150657	128150657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttcataaacaggcttgaGaatcagggtaccataaaagt	8	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	128150657	128150657	G	T	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.673	p.L225I	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	141	0	0	78	9	10.34	-	-	-	T	128150657	G	T	128150657	3	4	275	1	0	0	0	0	1	0	0	0	15955	942	33	2	1389	2	THEMIS	6	128150657	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15622	128150657	42964410	2089	27776										
THEMIS	0	genome.wustl.edu	37	chr6	128222054	128222054	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggtcaagggagtggacGaattcttccagtgataatgc	13	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	128222054	128222054	G	A	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	silent	c.24	p.F8	0.002	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	635	0	0	402	59	12.8	-	-	-	A	128222054	G	A	128222054	2	1	275	1	0	0	0	0	0	0	0	1	15955	1049	37	1		1	THEMIS	6	128222054	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71397	128222054	42893013	2090	27777										
PTPRK	0	genome.wustl.edu	37	chr6	128291387	128291387	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaactaagatgattccagGtactccaaagctacatcata	5	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	128291387	128291387	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	silent	c.4359	p.Y1453	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	189	0	0	96	11	10.28	-	-	-	A	128291387	G	A	128291387	2	1	275	1	0	0	0	0	0	0	0	1	12888	1256	44	4		4	PTPRK	6	128291387	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69333	128291387	42823680	2091	27778										
PTPRK	0	genome.wustl.edu	37	chr6	128505866	128505866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggagcaatgggtcttggCggttctaggagagatgagtg	19	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	128505866	128505866	C	T	SNP	PTPRK	ENST00000490332	human	ensembl	69_37n	-1	novel	missense	c.323	p.R108H	0.792	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_MAM_dom,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_MAM_dom	-	no_start_codon:pseudogene:no_stop_codon	PTPRK	HGNC	ENSG00000152894	57	0	0	35	9	20	-	-	-	T	128505866	C	T	128505866	3	4	275	1	0	0	0	0	1	0	0	0	12888	755	27	1	3567	1	PTPRK	6	128505866	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	214479	128505866	42609201	2092	27779										
ARG1	0	genome.wustl.edu	37	chr6	131904514	131904514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagaaaaggccaattcatCtaagttttgatgttgacgga	10	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	131904514	131904514	C	A	SNP	ARG1	ENST00000356962	human	ensembl	69_37n	1	known	missense	c.709	p.L237I	1.000	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG1	HGNC	ENSG00000118520	472	0	0	278	79	22.13	-	-	-	A	131904514	C	A	131904514	3	1	275	1	0	0	0	0	1	0	0	0	859	912	32	2	711	2	ARG1	6	131904514	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3398648	131904514	39210553	2093	27780										
ENPP3	0	genome.wustl.edu	37	chr6	131974027	131974027	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccagcagtctcagtgcccaGaagggtgagcatgactgata	12	11	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	131974027	131974027	G	A	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	missense	c.460	p.E154K	0.946	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	306	0	0	207	29	12.29	-	-	-	A	131974027	G	A	131974027	3	1	275	1	0	0	0	0	1	0	0	0	5168	943	33	2	478	2	ENPP3	6	131974027	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69513	131974027	39141040	2094	27781										
ENPP3	0	genome.wustl.edu	37	chr6	131995443	131995443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtagcattctacacgtcGcaactgaagtaacctccatt	6	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	131995443	131995443	G	A	SNP	ENPP3	ENST00000427148	human	ensembl	69_37n	1	known	missense	c.682	p.A228T	0.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	88	0	0	75	12	13.79	-	-	-	A	131995443	G	A	131995443	3	1	275	1	0	0	0	0	1	0	0	0	5168	1102	38	1		1	ENPP3	6	131995443	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21416	131995443	39119624	2095	27782										
ENPP3	0	genome.wustl.edu	37	chr6	132047228	132047228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgccatttgggaggcctaGggtactgcagaagaacgtgg	15	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132047228	132047228	G	A	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	missense	c.1841	p.R614K	0.820	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	295	0	0	166	69	29.36	-	-	-	A	132047228	G	A	132047228	3	1	275	1	0	0	0	0	1	0	0	0	5168	1000	35	4	1919	4	ENPP3	6	132047228	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	51785	132047228	39067839	2096	27783										
CTGF	0	genome.wustl.edu	37	chr6	132270449	132270449	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtagtacagcgattcaaaGatgtcattgtctccgggaca	10	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132270449	132270449	G	T	SNP	CTGF	ENST00000367976	human	ensembl	69_37n	-1	known	silent	c.1005	p.I335	1.000	pfam_Cys_knot,pirsf_IGFBP_CNN	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523	117	0	0	60	9	13.04	-	-	-	T	132270449	G	T	132270449	2	4	275	1	0	0	0	0	0	0	0	1	4040	932	33	2		2	CTGF	6	132270449	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	223221	132270449	38844618	2097	27784										
MOXD1	0	genome.wustl.edu	37	chr6	132695965	132695965	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatacctaaatacagagagAaaagaattcataggaccttt	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132695965	132695965	A	G	SNP	MOXD1	ENST00000336749	human	ensembl	69_37n	-1	putative	silent	c.12	p.F4	0.000	pfscan_DOMON_domain	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931	100	0	0	80	17	17.53	-	-	-	G	132695965	A	G	132695965	2	3	275	1	0	0	0	0	0	0	0	1	9792	261	9	5		5	MOXD1	6	132695965	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	425516	132695965	38419102	2098	27785										
TAAR2	0	genome.wustl.edu	37	chr6	132938300	132938300	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaagcctactcactttCtttttgcatacacaaaatag	4	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132938300	132938300	C	A	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	nonsense	c.1045	p.E349*	0.977	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	78	0	0	58	21	26.58	-	-	-	A	132938300	C	A	132938300	4	1	275	1	0	0	0	0	0	1	0	0	15582	922	32	2	14	2	TAAR2	6	132938300	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	242335	132938300	38176767	2099	27786										
TAAR2	0	genome.wustl.edu	37	chr6	132939135	132939135	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgtgtgaagctgcttgaaGtaggaaatggaaattatcat	13	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132939135	132939135	G	T	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	nonsense	c.210	p.Y70*	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Trace_amine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	407	0	0	264	52	16.4	-	-	-	T	132939135	G	T	132939135	4	4	275	1	0	0	0	0	0	1	0	0	15582	1024	36	4	849	4	TAAR2	6	132939135	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	835	132939135	38175932	2100	27787										
TAAR1	0	genome.wustl.edu	37	chr6	132966741	132966741	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaataaccaagatattcatCttggctttatatctcagtgg	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	132966741	132966741	C	A	SNP	TAAR1	ENST00000275216	human	ensembl	69_37n	-1	known	missense	c.402	p.K134N	0.621	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Trac_amin_rcpt_1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trac_amin_rcpt_1,prints_Trace_amine_rcpt	-	no_errors	TAAR1	HGNC	ENSG00000146399	150	0	0	72	9	11.11	-	-	-	A	132966741	C	A	132966741	3	1	275	1	0	0	0	0	1	0	0	0	15581	912	32	2	621	2	TAAR1	6	132966741	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27606	132966741	38148326	2101	27788										
VNN2	0	genome.wustl.edu	37	chr6	133065481	133065481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagctatgatcattaataaTatgaatattagcaggtaagt	7	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	133065481	133065481	T	C	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.1521	p.I507M	0.000	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	265	0	0	228	46	16.79	-	-	-	C	133065481	T	C	133065481	3	2	275	1	0	0	0	0	1	0	0	0	17280	1396	49	5	45	5	VNN2	6	133065481	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	98740	133065481	38049586	2102	27789										
RPS12	0	genome.wustl.edu	37	chr6	133138123	133138123	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacaacaagaaactaggaGaatgggtaggcctttgtaaa	11	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	133138123	133138123	G	A	SNP	RPS12	ENST00000230050	human	ensembl	69_37n	1	known	missense	c.259	p.E87K	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_S12e	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_S12e	-	no_errors	RPS12	HGNC	ENSG00000112306	185	1	0.54	153	30	16.3	-	-	-	A	133138123	G	A	133138123	3	1	275	1	0	0	0	0	1	0	0	0	13708	943	33	2	273	2	RPS12	6	133138123	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72642	133138123	37976944	2103	27790										
EYA4	0	genome.wustl.edu	37	chr6	133802608	133802608	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgttatctataggagagttCgataccatgcagagtccctc	9	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	133802608	133802608	C	T	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	silent	c.978	p.F326	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	338	0	0	165	63	27.63	-	-	-	T	133802608	C	T	133802608	2	4	275	1	0	0	0	0	0	0	0	1	5368	883	31	1		1	EYA4	6	133802608	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	664485	133802608	37312459	2104	27791										
EYA4	0	genome.wustl.edu	37	chr6	133844248	133844248	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caactgatcccagcacttgcGaaggttctactctatagttt	7	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	133844248	133844248	G	A	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	silent	c.1671	p.A557	0.983	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	357	0	0	243	31	11.31	-	-	-	A	133844248	G	A	133844248	2	1	275	1	0	0	0	0	0	0	0	1	5368	1045	37	1		1	EYA4	6	133844248	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41640	133844248	37270819	2105	27792										
SLC2A12	0	genome.wustl.edu	37	chr6	134349542	134349542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctagaccaattgaaaaaGcagcaacataaacaagcaag	7	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	134349542	134349542	G	A	SNP	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	missense	c.1421	p.A474V	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	166	0	0	109	27	19.85	-	-	-	A	134349542	G	A	134349542	3	1	275	1	0	0	0	0	1	0	0	0	14630	971	34	4	448	4	SLC2A12	6	134349542	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	505294	134349542	36765525	2106	27793										
SLC2A12	0	genome.wustl.edu	37	chr6	134350254	134350254	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtgctcttaaccttccaaGaaccttgctagcagctccct	7	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	134350254	134350254	G	T	SNP	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	missense	c.709	p.L237I	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	104	0	0	95	15	13.64	-	-	-	T	134350254	G	T	134350254	3	4	275	1	0	0	0	0	1	0	0	0	14630	942	33	2	1160	2	SLC2A12	6	134350254	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	712	134350254	36764813	2107	27794										
SGK1	0	genome.wustl.edu	37	chr6	134491430	134491430	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaaagagtccgtgggaggCgcataggaaaagcctaggaa	16	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	134491430	134491430	C	T	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	silent	c.1557	p.A519	0.047	pfam_Pkinase_C,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	195	0	0	98	30	23.26	-	-	-	T	134491430	C	T	134491430	2	4	275	1	0	0	0	0	0	0	0	1	14295	755	27	1		1	SGK1	6	134491430	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141176	134491430	36623637	2108	27795										
HBS1L	0	genome.wustl.edu	37	chr6	135318011	135318011	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcatacttatgcatagttCttttgtttatattacccaga	5	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	135318011	135318011	C	A	SNP	HBS1L	ENST00000367837	human	ensembl	69_37n	-1	known	missense	c.869	p.R290I	1.000	pfam_ProtSyn_GTP-bd	pfam_DUF1916,pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	HBS1L	HGNC	ENSG00000112339	393	0	0	261	35	11.78	-	-	-	A	135318011	C	A	135318011	3	1	275	1	0	0	0	0	1	0	0	0	7038	913	32	2	1233	2	HBS1L	6	135318011	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	826581	135318011	35797056	2109	27796										
HBS1L	0	genome.wustl.edu	37	chr6	135371786	135371786	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatcatcatcttcaaaatCtaaaataaagacaaaagaga	5	6	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	135371786	135371786	C	A	SNP	HBS1L	ENST00000367837	human	ensembl	69_37n	-1	known	splice_site	c.44-1	e2-1	1.000	-	-	-	no_errors	HBS1L	HGNC	ENSG00000112339	84	0	0	35	16	31.37	-	-	-	A	135371786	C	A	135371786	5	1	275	1	0	0	0	0	0	0	1	0	7038	927	32	2	3552	2	HBS1L	6	135371786	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	53775	135371786	35743281	2110	27797										
MAP7	0	genome.wustl.edu	37	chr6	136693703	136693703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgttacaaagagttttggtCgatccatcgaatttctagag	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	136693703	136693703	C	T	SNP	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	missense	c.878	p.R293Q	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	334	0	0	279	33	10.54	-	-	-	T	136693703	C	T	136693703	3	4	275	1	0	0	0	0	1	0	0	0	9337	884	31	1	1481	1	MAP7	6	136693703	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1321917	136693703	34421364	2111	27798										
MAP3K5	0	genome.wustl.edu	37	chr6	136882754	136882754	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtatttgtgccagaagaatTtagatgaaatacaggcaatt	9	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	136882754	136882754	T	G	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.3904	p.N1302H	0.006	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	138	0	0	126	56	30.77	-	-	-	G	136882754	T	G	136882754	3	3	275	1	0	0	0	0	1	0	0	0	9324	1841	64	5	232	5	MAP3K5	6	136882754	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	189051	136882754	34232313	2112	27799										
MAP3K5	0	genome.wustl.edu	37	chr6	136913591	136913591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaccccaaaaagagtgtccGaattcccttgacatctcttt	5	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	136913591	136913591	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.3040	p.R1014W	0.960	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	113	0	0	92	21	18.58	-	-	-	A	136913591	G	A	136913591	3	1	275	1	0	0	0	0	1	0	0	0	9324	1057	37	1	1120	1	MAP3K5	6	136913591	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30837	136913591	34201476	2113	27800										
IFNGR1	0	genome.wustl.edu	37	chr6	137524672	137524672	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaatggtaatacaaacttCttttgacttttcagttgtaa	6	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	137524672	137524672	C	A	SNP	IFNGR1	ENST00000367739	human	ensembl	69_37n	-1	known	nonsense	c.697	p.E233*	0.271	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697	142	0	0	121	38	23.9	-	-	-	A	137524672	C	A	137524672	4	1	275	1	0	0	0	0	0	1	0	0	7603	922	32	2	784	2	IFNGR1	6	137524672	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	611081	137524672	33590395	2114	27801										
IFNGR1	0	genome.wustl.edu	37	chr6	137525481	137525481	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacatacctcacttccgttCattctcacatacacattgta	2	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	137525481	137525481	C	A	SNP	IFNGR1	ENST00000367739	human	ensembl	69_37n	-1	known	missense	c.534	p.M178I	0.000	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697	158	0	0	148	21	12.43	-	-	-	A	137525481	C	A	137525481	3	1	275	1	0	0	0	0	1	0	0	0	7603	826	29	2	951	2	IFNGR1	6	137525481	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	809	137525481	33589586	2115	27802										
OLIG3	0	genome.wustl.edu	37	chr6	137814825	137814825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccgagtggcccacggtcccGcagtgaaaggccgagtggtg	17	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	137814825	137814825	G	A	SNP	OLIG3	ENST00000367734	human	ensembl	69_37n	-1	known	silent	c.483	p.C161	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	OLIG3	HGNC	ENSG00000177468	26	0	0	26	7	21.21	-	-	-	A	137814825	G	A	137814825	2	1	275	1	0	0	0	0	0	0	0	1	10935	1079	38	1		1	OLIG3	6	137814825	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	289344	137814825	33300242	2116	27803										
TNFAIP3	0	genome.wustl.edu	37	chr6	138192623	138192623	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagaaactcaactggtgtCgagaagtccggaagcttgtg	13	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	138192623	138192623	C	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	nonsense	c.259	p.R87*	1.000	NULL	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	330	1	0.3	183	26	12.44	-	-	-	T	138192623	C	T	138192623	4	4	275	1	0	0	0	0	0	1	0	0	16369	876	31	1	261	1	TNFAIP3	6	138192623	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	377798	138192623	32922444	2117	27804										
KIAA1244	0	genome.wustl.edu	37	chr6	138619874	138619874	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcactcttccgacctttCgagcgcattatgcagctgga	10	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	138619874	138619874	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	silent	c.3780	p.F1260	0.502	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	125	0	0	72	28	28	-	-	-	T	138619874	C	T	138619874	2	4	275	1	0	0	0	0	0	0	0	1	8269	883	31	1		1	KIAA1244	6	138619874	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	427251	138619874	32495193	2118	27805										
HEBP2	0	genome.wustl.edu	37	chr6	138734175	138734175	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatagaaataatgaagtgtGgttgattcaaaaaaatgaac	8	2	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	138734175	138734175	G	A	SNP	HEBP2	ENST00000058691	human	ensembl	69_37n	1	known	nonsense	c.578	p.W193*	1.000	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_bac	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_bac	-	no_errors	HEBP2	HGNC	ENSG00000051620	117	0	0	95	18	15.93	-	-	-	A	138734175	G	A	138734175	4	1	275	1	0	0	0	0	0	1	0	0	7088	1357	47	4	592	4	HEBP2	6	138734175	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	114301	138734175	32380892	2119	27806										
REPS1	0	genome.wustl.edu	37	chr6	139265049	139265049	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgatttacataatactgtCtttgttcatctgttattttc	4	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	139265049	139265049	C	A	SNP	REPS1	ENST00000450536	human	ensembl	69_37n	-1	known	missense	c.857	p.R286I	1.000	smart_EPS15_homology,pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597	312	0	0	275	33	10.71	-	-	-	A	139265049	C	A	139265049	3	1	275	1	0	0	0	0	1	0	0	0	13311	913	32	2	1593	2	REPS1	6	139265049	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	530874	139265049	31850018	2120	27807										
TXLNB	0	genome.wustl.edu	37	chr6	139564361	139564361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgatttttttgtggagttCgtttctctcttcttgtaaag	8	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	139564361	139564361	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	69_37n	-1	known	missense	c.1357	p.E453K	0.981	NULL	pfam_Taxilin	-	no_errors	TXLNB	HGNC	ENSG00000164440	184	0	0	126	16	11.19	-	-	-	T	139564361	C	T	139564361	3	4	275	1	0	0	0	0	1	0	0	0	16885	893	31	1	701	1	TXLNB	6	139564361	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	299312	139564361	31550706	2121	27808										
TXLNB	0	genome.wustl.edu	37	chr6	139583814	139583814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcgctcactctgctgctCgatctggccctggatgtccg	10	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	139583814	139583814	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	69_37n	-1	known	missense	c.784	p.E262K	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNB	HGNC	ENSG00000164440	221	0	0	208	39	15.73	-	-	-	T	139583814	C	T	139583814	3	4	275	1	0	0	0	0	1	0	0	0	16885	893	31	1	1294	1	TXLNB	6	139583814	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19453	139583814	31531253	2122	27809										
VTA1	0	genome.wustl.edu	37	chr6	142519781	142519781	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtaactgaatgatttattTaattccccttttataaagaa	4	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	142519781	142519781	T	A	SNP	VTA1	ENST00000491881	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VTA1	HGNC	ENSG00000009844	115	0	0	62	10	13.89	-	-	-	A	142519781	T	A	142519781	1	1	275	0	1	0	0	0	0	0	0	0	17330	1769	61	5		5	VTA1	6	142519781	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2935967	142519781	28595286	2123	27810										
FUCA2	0	genome.wustl.edu	37	chr6	143816977	143816977	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggctgtccatggcccagtAgtttcacctgaaattaaaaa	9	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	143816977	143816977	A	C	SNP	FUCA2	ENST00000002165	human	ensembl	69_37n	-1	known	missense	c.1271	p.L424R	0.992	pirsf_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA2	HGNC	ENSG00000001036	129	0	0	88	26	22.81	-	-	-	C	143816977	A	C	143816977	3	2	275	1	0	0	0	0	1	0	0	0	6144	420	15	5	136	5	FUCA2	6	143816977	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1297196	143816977	27298090	2124	27811										
EPM2A	0	genome.wustl.edu	37	chr6	145948647	145948647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcgtcaatgtagacagccgGcctcttggccatgaggaaat	11	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	145948647	145948647	G	A	SNP	EPM2A	ENST00000367519	human	ensembl	69_37n	-1	known	missense	c.901	p.P301S	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_CBM_fam20,superfamily_Carb-bd-like_fold,smart_Dual-sp_phosphatase_subgr_cat,pfscan_CBM_fam20,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	EPM2A	HGNC	ENSG00000112425	171	0	0	104	21	16.8	-	-	-	A	145948647	G	A	145948647	3	1	275	1	0	0	0	0	1	0	0	0	5220	1203	42	4	132	4	EPM2A	6	145948647	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2131670	145948647	25166420	2125	27812										
SHPRH	0	genome.wustl.edu	37	chr6	146276436	146276436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctaccctcactggaggaGcacgtttccgtcggctgctc	10	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	146276436	146276436	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.23	p.A8V	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	188	0	0	173	22	11.22	-	-	-	A	146276436	G	A	146276436	3	1	275	1	0	0	0	0	1	0	0	0	14380	971	34	4	5188	4	SHPRH	6	146276436	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	327789	146276436	24838631	2126	27813										
STXBP5	0	genome.wustl.edu	37	chr6	147581807	147581807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctctatgtgggcactgaacGaggtaatatacatattgtca	10	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	147581807	147581807	G	A	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.488	p.R163Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	243	0	0	149	63	29.58	-	-	-	A	147581807	G	A	147581807	3	1	275	1	0	0	0	0	1	0	0	0	15447	1058	37	1	506	1	STXBP5	6	147581807	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1305371	147581807	23533260	2127	27814										
SASH1	0	genome.wustl.edu	37	chr6	148855021	148855021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacgtgctcagtgaagacGaggagaaacccaaacgcccc	12	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	148855021	148855021	G	A	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.1849	p.E617K	0.999	superfamily_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	158	0	0	78	17	17.89	-	-	-	A	148855021	G	A	148855021	3	1	275	1	0	0	0	0	1	0	0	0	13935	1059	37	1	1907	1	SASH1	6	148855021	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1273214	148855021	22260046	2128	27815										
TAB2	0	genome.wustl.edu	37	chr6	149719091	149719091	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcaaatcttacttacataGaattatttttcagcttgaag	6	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	149719091	149719091	G	T	SNP	TAB2	ENST00000484505	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.860	-	-	-	no_errors	TAB2	HGNC	ENSG00000055208	127	0	0	144	16	10	-	-	-	T	149719091	G	T	149719091	1	4	275	0	1	0	0	0	0	0	0	0	15588	957	33	2		2	TAB2	6	149719091	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	864070	149719091	21395976	2129	27816										
LATS1	0	genome.wustl.edu	37	chr6	149983263	149983263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatttcatcagcaccatTcttgcctaagcgatcttcgg	6	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	149983263	149983263	T	C	SNP	LATS1	ENST00000253339	human	ensembl	69_37n	-1	known	missense	c.2995	p.N999D	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS1	HGNC	ENSG00000131023	153	0	0	145	31	17.61	-	-	-	C	149983263	T	C	149983263	3	2	275	1	0	0	0	0	1	0	0	0	8700	1783	62	5	401	5	LATS1	6	149983263	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	264172	149983263	21131804	2130	27817										
PLEKHG1	0	genome.wustl.edu	37	chr6	151161666	151161666	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgcccaaattgcaacacaGaattatttttccaatttcaa	3	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	151161666	151161666	G	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.3792	p.Q1264H	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	172	0	0	69	34	33.01	-	-	-	T	151161666	G	T	151161666	3	4	275	1	0	0	0	0	1	0	0	0	12142	933	33	2	3850	2	PLEKHG1	6	151161666	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1178403	151161666	19953401	2131	27818										
ESR1	0	genome.wustl.edu	37	chr6	152420091	152420091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggcagagggtttccctgCcacggtctgagagctccctg	15	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152420091	152420091	C	A	SNP	ESR1	ENST00000206249	human	ensembl	69_37n	1	known	missense	c.1778	p.A593D	0.003	NULL	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	101	0	0	56	19	25.33	-	-	-	A	152420091	C	A	152420091	3	1	275	1	0	0	0	0	1	0	0	0	5293	739	26	4	1808	4	ESR1	6	152420091	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1258425	152420091	18694976	2132	27819										
SYNE1	0	genome.wustl.edu	37	chr6	152523035	152523035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagcttctttttgaaagttCgtagtttctccagggaatct	8	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152523035	152523035	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.23069	p.R7690Q	0.994	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	258	0	0	166	54	24.55	-	-	-	T	152523035	C	T	152523035	3	4	275	1	0	0	0	0	1	0	0	0	15537	884	31	1	3477	1	SYNE1	6	152523035	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102944	152523035	18592032	2133	27820										
SYNE1	0	genome.wustl.edu	37	chr6	152565761	152565761	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgattcctgcatcaaattCtttgagtccatcttcagcct	5	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152565761	152565761	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.19603	p.E6535*	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	530	0	0	403	54	11.82	-	-	-	A	152565761	C	A	152565761	4	1	275	1	0	0	0	0	0	1	0	0	15537	922	32	2	7027	2	SYNE1	6	152565761	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42726	152565761	18549306	2134	27821										
SYNE1	0	genome.wustl.edu	37	chr6	152671442	152671442	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtagtcttcatggtctttgActttcgcctccagactgaag	9	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152671442	152671442	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.11762	p.V3921D	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	161	0	0	84	32	27.35	-	-	-	T	152671442	A	T	152671442	3	4	275	1	0	0	0	0	1	0	0	0	15537	275	10	5	15004	5	SYNE1	6	152671442	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	105681	152671442	18443625	2135	27822										
SYNE1	0	genome.wustl.edu	37	chr6	152673229	152673229	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcttcaggaacatgtagaAtttcctggtattctgctatc	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152673229	152673229	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.11513	p.I3838T	0.012	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	196	0	0	97	37	27.61	-	-	-	G	152673229	A	G	152673229	3	3	275	1	0	0	0	0	1	0	0	0	15537	101	4	5	15261	5	SYNE1	6	152673229	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1787	152673229	18441838	2136	27823										
SYNE1	0	genome.wustl.edu	37	chr6	152679668	152679668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttttcagacttggttacgGcttcctataattagcattta	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152679668	152679668	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.10448	p.A3483V	0.998	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	120	0	0	116	16	12.12	-	-	-	A	152679668	G	A	152679668	3	1	275	1	0	0	0	0	1	0	0	0	15537	1203	42	4	16342	4	SYNE1	6	152679668	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6439	152679668	18435399	2137	27824										
SYNE1	0	genome.wustl.edu	37	chr6	152686151	152686151	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctgtttgactgataataGagcctgtgaaaacacataca	7	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152686151	152686151	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.9976	p.L3326I	0.102	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	267	0	0	283	55	16.27	-	-	-	T	152686151	G	T	152686151	3	4	275	1	0	0	0	0	1	0	0	0	15537	933	33	2	16826	2	SYNE1	6	152686151	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6483	152686151	18428916	2138	27825										
SYNE1	0	genome.wustl.edu	37	chr6	152708290	152708290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactcatcctctgtcttttCgtagagctccctggacttcg	8	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152708290	152708290	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.8404	p.E2802K	0.816	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	306	0	0	239	69	22.4	-	-	-	T	152708290	C	T	152708290	3	4	275	1	0	0	0	0	1	0	0	0	15537	893	31	1	18434	1	SYNE1	6	152708290	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22139	152708290	18406777	2139	27826										
SYNE1	0	genome.wustl.edu	37	chr6	152751335	152751335	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcttcaaattcagacacaGattgctggatctaaaacatt	5	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152751335	152751335	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.4700	p.S1567Y	0.996	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	84	0	0	48	15	23.81	-	-	-	T	152751335	G	T	152751335	3	4	275	1	0	0	0	0	1	0	0	0	15537	942	33	2	22210	2	SYNE1	6	152751335	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43045	152751335	18363732	2140	27827										
SYNE1	0	genome.wustl.edu	37	chr6	152763330	152763330	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctccctgctgcgcctgcgcGatctgctgctgcacatctct	9	17	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152763330	152763330	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.3888	p.I1296	0.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	124	0	0	68	18	20.93	-	-	-	A	152763330	G	A	152763330	2	1	275	1	0	0	0	0	0	0	0	1	15537	1048	37	1		1	SYNE1	6	152763330	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11995	152763330	18351737	2141	27828										
SYNE1	0	genome.wustl.edu	37	chr6	152786476	152786476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccactgtattgccatagcGatcccagttagagatcactt	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	152786476	152786476	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.1849	p.R617C	0.999	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	205	0	0	162	25	13.23	-	-	-	A	152786476	G	A	152786476	3	1	275	1	0	0	0	0	1	0	0	0	15537	1058	37	1	25133	1	SYNE1	6	152786476	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23146	152786476	18328591	2142	27829										
MYCT1	0	genome.wustl.edu	37	chr6	153043260	153043260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcccttcttccaatatctctCccaccatcagcacttcccac	1	20	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	153043260	153043260	C	A	SNP	MYCT1	ENST00000367245	human	ensembl	69_37n	1	known	missense	c.580	p.P194T	0.000	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	124	0	0	92	26	22.03	-	-	-	A	153043260	C	A	153043260	3	1	275	1	0	0	0	0	1	0	0	0	10094	855	30	2	586	2	MYCT1	6	153043260	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256784	153043260	18071807	2143	27830										
RGS17	0	genome.wustl.edu	37	chr6	153345440	153345440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaatcttcatatatcatcCtagccttttcttcaattact	2	10	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	153345440	153345440	C	A	SNP	RGS17	ENST00000206262	human	ensembl	69_37n	-1	known	missense	c.401	p.R134M	0.998	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS17	HGNC	ENSG00000091844	509	0	0	422	49	10.4	-	-	-	A	153345440	C	A	153345440	3	1	275	1	0	0	0	0	1	0	0	0	13383	681	24	4	239	4	RGS17	6	153345440	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	302180	153345440	17769627	2144	27831										
TIAM2	0	genome.wustl.edu	37	chr6	155451383	155451383	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttccgacattgatgtgccCtccagagtggcacacgggga	13	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	155451383	155451383	C	A	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	silent	c.1026	p.P342	0.992	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	92	0	0	53	25	32.05	-	-	-	A	155451383	C	A	155451383	2	1	275	1	0	0	0	0	0	0	0	1	15986	668	24	4		4	TIAM2	6	155451383	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2105943	155451383	15663684	2145	27832										
TFB1M	0	genome.wustl.edu	37	chr6	155619688	155619688	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacatctccatgaacaattCtcagtttcccaggtgctgca	7	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	155619688	155619688	C	A	SNP	TFB1M	ENST00000367166	human	ensembl	69_37n	-1	known	missense	c.317	p.R106I	1.000	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639	202	0	0	108	44	28.95	-	-	-	A	155619688	C	A	155619688	3	1	275	1	0	0	0	0	1	0	0	0	15888	913	32	2	743	2	TFB1M	6	155619688	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	168305	155619688	15495379	2146	27833										
ARID1B	0	genome.wustl.edu	37	chr6	157528291	157528291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggatgaggacaagggggtgGcctgcagcaaagatgagtgg	19	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	157528291	157528291	G	T	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.6136	p.A2046S	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	278	0	0	251	33	11.58	-	-	-	T	157528291	G	T	157528291	3	4	275	1	0	0	0	0	1	0	0	0	916	1203	42	4	6094	4	ARID1B	6	157528291	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1908603	157528291	13586776	2147	27834										
SNX9	0	genome.wustl.edu	37	chr6	158288594	158288594	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataggctcgggttatgtatGattttgctgctgaacctgga	13	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	158288594	158288594	G	A	SNP	SNX9	ENST00000392185	human	ensembl	69_37n	1	known	missense	c.28	p.D10N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Snx9,pfscan_SH3_domain	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX9	HGNC	ENSG00000130340	928	1	0.11	590	76	11.41	-	-	-	A	158288594	G	A	158288594	3	1	275	1	0	0	0	0	1	0	0	0	14998	1290	45	2	34	2	SNX9	6	158288594	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	760303	158288594	12826473	2148	27835										
SYNJ2	0	genome.wustl.edu	37	chr6	158490642	158490642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagatacattctgttgacttCggcacagctggtgggcgtct	12	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	158490642	158490642	C	T	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	missense	c.1877	p.S626L	0.994	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	145	0	0	88	38	30.16	-	-	-	T	158490642	C	T	158490642	3	4	275	1	0	0	0	0	1	0	0	0	15545	893	31	1	1931	1	SYNJ2	6	158490642	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	202048	158490642	12624425	2149	27836										
SERAC1	0	genome.wustl.edu	37	chr6	158567853	158567853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgacatttcccgcacagcctCgagtcgcgtggttttgtcat	10	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	158567853	158567853	C	T	SNP	SERAC1	ENST00000367104	human	ensembl	69_37n	-1	known	missense	c.448	p.E150K	0.951	NULL	pfam_PGAP1-like,superfamily_ARM-type_fold	-	no_errors	SERAC1	HGNC	ENSG00000122335	231	0	0	112	28	19.86	-	-	-	T	158567853	C	T	158567853	3	4	275	1	0	0	0	0	1	0	0	0	14162	893	31	1	1564	1	SERAC1	6	158567853	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	77211	158567853	12547214	2150	27837										
TULP4	0	genome.wustl.edu	37	chr6	158924906	158924906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagacaaacgagttccaggAcagctccgagagcgagcctg	12	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	158924906	158924906	A	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.4211	p.D1404G	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	96	0	0	23	11	32.35	-	-	-	G	158924906	A	G	158924906	3	3	275	1	0	0	0	0	1	0	0	0	16873	275	10	5	4261	5	TULP4	6	158924906	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	357053	158924906	12190161	2151	27838										
FNDC1	0	genome.wustl.edu	37	chr6	159653123	159653123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgaaaaccccagcttcgcGccaagaaggcagaggagctg	12	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	159653123	159653123	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.1579	p.A527T	0.003	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	88	0	0	26	12	30.77	-	-	-	A	159653123	G	A	159653123	3	1	275	1	0	0	0	0	1	0	0	0	6014	1087	38	1	1621	1	FNDC1	6	159653123	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	728217	159653123	11461944	2152	27839										
SLC22A2	0	genome.wustl.edu	37	chr6	160668235	160668235	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaagggaggcgggtagaGattttccatttttctttgcg	13	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	160668235	160668235	G	T	SNP	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	missense	c.938	p.S313Y	0.008	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	138	1	0.72	94	31	24.8	-	-	-	T	160668235	G	T	160668235	3	4	275	1	0	0	0	0	1	0	0	0	14540	942	33	2	757	2	SLC22A2	6	160668235	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1015112	160668235	10446832	2153	27840										
PLG	0	genome.wustl.edu	37	chr6	161123358	161123358	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaacataaggaagtggttCttctacttcttttatttctg	8	6	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	161123358	161123358	C	A	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.22	p.L8I	0.426	pirsf_Pept_S1A_plasmin	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	1125	2	0.18	758	116	13.26	-	-	-	A	161123358	C	A	161123358	3	1	275	1	0	0	0	0	1	0	0	0	12160	913	32	2	24	2	PLG	6	161123358	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	455123	161123358	9991709	2154	27841										
MAP3K4	0	genome.wustl.edu	37	chr6	161508888	161508888	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgaccaagcacggtgatCgagcccgtgattcagaggac	12	11	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	161508888	161508888	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	nonsense	c.2725	p.R909*	0.004	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	246	1	0.4	123	76	38.19	-	-	-	T	161508888	C	T	161508888	4	4	275	1	0	0	0	0	0	1	0	0	9323	876	31	1	2763	1	MAP3K4	6	161508888	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	385530	161508888	9606179	2155	27842										
C6orf118	0	genome.wustl.edu	37	chr6	165706897	165706897	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaggacatcacacagacaCctgcctgatcgttcctttgc	9	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	165706897	165706897	C	A	SNP	C6orf118	ENST00000543069	human	ensembl	69_37n	-1	known	missense	c.813	p.R271S	0.496	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	471	0	0	330	61	15.56	-	-	-	A	165706897	C	A	165706897	3	1	275	1	0	0	0	0	1	0	0	0	2344	522	18	4		4	C6orf118	6	165706897	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4198009	165706897	5408170	2156	27843										
TTLL2	0	genome.wustl.edu	37	chr6	167754538	167754538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacaacttgaaaccatggCttttagaggtcaactacagc	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	167754538	167754538	C	A	SNP	TTLL2	ENST00000239587	human	ensembl	69_37n	1	known	missense	c.1150	p.L384I	0.998	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC	ENSG00000120440	143	0	0	205	28	12.02	-	-	-	A	167754538	C	A	167754538	3	1	275	1	0	0	0	0	1	0	0	0	16824	797	28	4	1160	4	TTLL2	6	167754538	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2047641	167754538	3360529	2157	27844										
FAM120B	0	genome.wustl.edu	37	chr6	170632292	170632292	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccttacccagccaggccttCatttaccgtcccattcgaca	6	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	6	170632292	170632292	C	A	SNP	FAM120B	ENST00000537664	human	ensembl	69_37n	1	known	missense	c.1929	p.F643L	0.539	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584	664	1	0.15	580	89	13.26	-	-	-	A	170632292	C	A	170632292	3	1	275	1	0	0	0	0	1	0	0	0	5457	825	29	2	1866	2	FAM120B	6	170632292	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2877754	170632292	482775	2158	27845										
GPER	0	genome.wustl.edu	37	chr7	1132345	1132345	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccctcatctacagctttctCggggagaccttcagggacaa	9	14	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	1132345	1132345	C	T	SNP	GPER	ENST00000297469	human	ensembl	69_37n	1	known	silent	c.981	p.L327	0.011	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPER	HGNC	ENSG00000164850	25	0	0	6	4	40	-	-	-	T	1132345	C	T	1132345	2	4	275	1	0	0	0	0	0	0	0	1	6657	871	31	1		1	GPER	7	1132345	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09		1132345	158006318	2159	27846										
NUDT1	0	genome.wustl.edu	37	chr7	2284290	2284290	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcatgaaaaagcgaggcttCggggccggccggtggaatgg	19	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	2284290	2284290	C	T	SNP	NUDT1	ENST00000343985	human	ensembl	69_37n	1	known	silent	c.150	p.F50	0.882	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase,prints_Nudix_hydrolase	-	no_errors	NUDT1	HGNC	ENSG00000106268	62	0	0	41	5	10.87	-	-	-	T	2284290	C	T	2284290	2	4	275	1	0	0	0	0	0	0	0	1	10798	883	31	1		1	NUDT1	7	2284290	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1151945	2284290	156854373	2160	27847										
EIF3B	0	genome.wustl.edu	37	chr7	2406181	2406181	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagccatgatggcaaattCtttgccagaatgaccctgga	11	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	2406181	2406181	C	A	SNP	EIF3B	ENST00000360876	human	ensembl	69_37n	1	known	missense	c.1311	p.F437L	1.000	pirsf_eIF3b	pfam_TIF2A_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3b,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263	131	0	0	158	33	17.28	-	-	-	A	2406181	C	A	2406181	3	1	275	1	0	0	0	0	1	0	0	0	5048	912	32	2	1341	2	EIF3B	7	2406181	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	121891	2406181	156732482	2161	27848										
CARD11	0	genome.wustl.edu	37	chr7	2951848	2951848	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggcaggggcgatgcattcGaacgcgttggggttcttctc	15	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	2951848	2951848	G	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.3102	p.F1034	0.931	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	95	0	0	52	14	21.21	-	-	-	A	2951848	G	A	2951848	2	1	275	1	0	0	0	0	0	0	0	1	2670	1049	37	1		1	CARD11	7	2951848	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	545667	2951848	156186815	2162	27849										
SDK1	0	genome.wustl.edu	37	chr7	4107566	4107566	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagaaaaatggcatcattaCtggtaagtaggcctgtcctt	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	4107566	4107566	C	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3008	p.T1003N	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	158	1	0.63	92	32	25.81	-	-	-	A	4107566	C	A	4107566	3	1	275	1	0	0	0	0	1	0	0	0	14056	565	20	4	3086	4	SDK1	7	4107566	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1155718	4107566	155031097	2163	27850										
SDK1	0	genome.wustl.edu	37	chr7	4259823	4259823	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacctcaccaagggagtgacCtatttcttccgtgtccaagc	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	4259823	4259823	C	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.5622	p.T1874	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	63	0	0	27	13	32.5	-	-	-	A	4259823	C	A	4259823	2	1	275	1	0	0	0	0	0	0	0	1	14056	668	24	4		4	SDK1	7	4259823	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	152257	4259823	154878840	2164	27851										
RADIL	0	genome.wustl.edu	37	chr7	4871804	4871804	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctctgctagttctttggtTttctcctacaattacaaagc	5	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	4871804	4871804	T	G	SNP	RADIL	ENST00000399583	human	ensembl	69_37n	-1	known	missense	c.1422	p.K474N	0.992	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927	160	0	0	83	13	13.54	-	-	-	G	4871804	T	G	4871804	3	3	275	1	0	0	0	0	1	0	0	0	13080	1838	64	5	1849	5	RADIL	7	4871804	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	611981	4871804	154266859	2165	27852										
TNRC18	0	genome.wustl.edu	37	chr7	5352859	5352859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgctgctctcggactcttCggccccgtcctgctcagcct	10	18	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	5352859	5352859	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.7663	p.E2555K	0.936	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	31	0	0	9	4	28.57	-	-	-	T	5352859	C	T	5352859	3	4	275	1	0	0	0	0	1	0	0	0	16434	893	31	1	1259	1	TNRC18	7	5352859	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	481055	5352859	153785804	2166	27853										
PMS2	0	genome.wustl.edu	37	chr7	6022616	6022616	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttccatttctgcaaacatCgttttactgcaggtagaaaa	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	6022616	6022616	C	T	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	silent	c.2013	p.T671	0.038	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	64	0	0	68	17	20	-	-	-	T	6022616	C	T	6022616	2	4	275	1	0	0	0	0	0	0	0	1	12217	871	31	1		1	PMS2	7	6022616	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	669757	6022616	153116047	2167	27854										
AIMP2	0	genome.wustl.edu	37	chr7	6054811	6054811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctctgcaagctcttgagtCccgccaagatgatattttaa	8	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	6054811	6054811	C	T	SNP	AIMP2	ENST00000223029	human	ensembl	69_37n	1	known	missense	c.170	p.S57F	1.000	NULL	superfamily_Glutathione-S-Trfase_C-like	-	no_errors	AIMP2	HGNC	ENSG00000106305	229	1	0.43	178	22	11	-	-	-	T	6054811	C	T	6054811	3	4	275	1	0	0	0	0	1	0	0	0	434	855	30	2	176	2	AIMP2	7	6054811	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32195	6054811	153083852	2168	27855										
EIF2AK1	0	genome.wustl.edu	37	chr7	6080762	6080762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgattttcagtgtcagattCtccaaagcgtttttcttttt	6	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	6080762	6080762	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	missense	c.880	p.E294K	0.007	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	171	0	0	134	29	17.79	-	-	-	T	6080762	C	T	6080762	3	4	275	1	0	0	0	0	1	0	0	0	5031	922	32	2	1040	2	EIF2AK1	7	6080762	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25951	6080762	153057901	2169	27856										
C1GALT1	0	genome.wustl.edu	37	chr7	7278212	7278212	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagacaatttgaggtggcttCtttcaaaatacgaccctgaa	8	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	7278212	7278212	C	A	SNP	C1GALT1	ENST00000223122	human	ensembl	69_37n	1	known	missense	c.547	p.L183I	1.000	pfam_Fringe-like,pfam_Glyco_trans_31	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392	170	0	0	89	34	27.42	-	-	-	A	7278212	C	A	7278212	3	1	275	1	0	0	0	0	1	0	0	0	1971	913	32	2	553	2	C1GALT1	7	7278212	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1197450	7278212	151860451	2170	27857										
ICA1	0	genome.wustl.edu	37	chr7	8272372	8272372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcatatcgatcctgtaagtCccagggataactgctaaaaa	8	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	8272372	8272372	C	T	SNP	ICA1	ENST00000422063	human	ensembl	69_37n	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_Arfaptin_homology_dom,pfam_Islet_autoAg_Ica1_C,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	515	0	0	452	57	11.18	-	-	-	T	8272372	C	T	8272372	3	4	275	1	0	0	0	0	1	0	0	0	7531	855	30	2	1468	2	ICA1	7	8272372	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	994160	8272372	150866291	2171	27858										
PHF14	0	genome.wustl.edu	37	chr7	11078433	11078433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctgaatggaaaacttcGaagtgaaggacaaggaatat	10	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	11078433	11078433	G	A	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	missense	c.2027	p.R676Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	186	0	0	173	28	13.93	-	-	-	A	11078433	G	A	11078433	3	1	275	1	0	0	0	0	1	0	0	0	11899	1058	37	1	2069	1	PHF14	7	11078433	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2806061	11078433	148060230	2172	27859										
PHF14	0	genome.wustl.edu	37	chr7	11209125	11209125	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaaagaaataaaagatttTctgtagtgtttttgaaaagt	7	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	11209125	11209125	T	G	SNP	PHF14	ENST00000469407	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.899	-	-	-	no_errors	PHF14	HGNC	ENSG00000106443	73	0	0	37	5	11.9	-	-	-	G	11209125	T	G	11209125	1	3	275	0	1	0	0	0	0	0	0	0	11899	1798	62	5		5	PHF14	7	11209125	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	130692	11209125	147929538	2173	27860										
THSD7A	0	genome.wustl.edu	37	chr7	11446061	11446061	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccatcacttactacacaaGaaatgttccttgttctggtc	5	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	11446061	11446061	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.4103	p.S1368F	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	125	0	0	101	16	13.68	-	-	-	A	11446061	G	A	11446061	3	1	275	1	0	0	0	0	1	0	0	0	15974	942	33	2	898	2	THSD7A	7	11446061	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	236936	11446061	147692602	2174	27861										
SCIN	0	genome.wustl.edu	37	chr7	12666272	12666272	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttttttaaggactggagaGataaagatcagagtgatggc	13	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	12666272	12666272	G	T	SNP	SCIN	ENST00000297029	human	ensembl	69_37n	1	known	missense	c.1045	p.D349Y	1.000	NULL	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747	203	1	0.49	93	29	23.77	-	-	-	T	12666272	G	T	12666272	3	4	275	1	0	0	0	0	1	0	0	0	13993	942	33	2	1075	2	SCIN	7	12666272	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1220211	12666272	146472391	2175	27862										
ETV1	0	genome.wustl.edu	37	chr7	13971370	13971370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggttcagaaagctggcggcGaaatctagggaataagagag	16	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	13971370	13971370	G	A	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	missense	c.559	p.R187C	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	166	0	0	131	46	25.99	-	-	-	A	13971370	G	A	13971370	3	1	275	1	0	0	0	0	1	0	0	0	5314	1058	37	1	898	1	ETV1	7	13971370	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1305098	13971370	145167293	2176	27863										
ISPD	0	genome.wustl.edu	37	chr7	16445873	16445873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttcgaccagtgagatgCgtttatgctgatacttctga	10	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	16445873	16445873	C	T	SNP	ISPD	ENST00000407010	human	ensembl	69_37n	-1	known	missense	c.347	p.R116H	0.427	pfam_ISPD_synthase	pfam_ISPD_synthase	-	no_errors	ISPD	HGNC	ENSG00000214960	242	0	0	129	16	11.03	-	-	-	T	16445873	C	T	16445873	3	4	275	1	0	0	0	0	1	0	0	0	7918	768	27	1	1044	1	ISPD	7	16445873	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2474503	16445873	142692790	2177	27864										
ABCB5	0	genome.wustl.edu	37	chr7	20782611	20782611	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattgagcgaggaaagacaGtagcatttgtggggagcagc	16	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	20782611	20782611	G	T	SNP	ABCB5	ENST00000258738	human	ensembl	69_37n	1	known	missense	c.1801	p.V601L	0.766	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	657	1	0.15	594	97	14.04	-	-	-	T	20782611	G	T	20782611	3	4	275	1	0	0	0	0	1	0	0	0	44	1029	36	4	3271	4	ABCB5	7	20782611	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4336738	20782611	138356052	2178	27865										
SP4	0	genome.wustl.edu	37	chr7	21469810	21469810	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacattagtgagctcagcaGatactggccagtatgcaagc	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21469810	21469810	G	A	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	missense	c.1027	p.D343N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	45	0	0	29	11	27.5	-	-	-	A	21469810	G	A	21469810	3	1	275	1	0	0	0	0	1	0	0	0	15055	942	33	2	1037	2	SP4	7	21469810	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	687199	21469810	137668853	2179	27866										
DNAH11	0	genome.wustl.edu	37	chr7	21641030	21641030	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagtctgaatgagctacaaGaatttataaaggagacagat	9	4	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21641030	21641030	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	nonsense	c.3442	p.E1148*	0.980	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	239	0	0	242	39	13.88	-	-	-	T	21641030	G	T	21641030	4	4	275	1	0	0	0	0	0	1	0	0	4635	943	33	2	3512	2	DNAH11	7	21641030	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	171220	21641030	137497633	2180	27867										
DNAH11	0	genome.wustl.edu	37	chr7	21678629	21678629	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctttcctcgcttctatttCgtctcttctgctgatttact	5	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21678629	21678629	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.4905	p.F1635	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	755	0	0	542	81	13	-	-	-	T	21678629	C	T	21678629	2	4	275	1	0	0	0	0	0	0	0	1	4635	883	31	1		1	DNAH11	7	21678629	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37599	21678629	137460034	2181	27868										
DNAH11	0	genome.wustl.edu	37	chr7	21742383	21742383	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcttggttgtggctggatCtctgaaacgaggagataaaa	13	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21742383	21742383	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.6257	p.S2086Y	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	370	1	0.27	234	38	13.97	-	-	-	A	21742383	C	A	21742383	3	1	275	1	0	0	0	0	1	0	0	0	4635	913	32	2	6404	2	DNAH11	7	21742383	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	63754	21742383	137396280	2182	27869										
DNAH11	0	genome.wustl.edu	37	chr7	21813517	21813517	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttttctagaacaaatatCactgtttaagaacctgttga	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21813517	21813517	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	nonsense	c.9257	p.S3086*	0.965	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	223	0	0	124	15	10.79	-	-	-	A	21813517	C	A	21813517	4	1	275	1	0	0	0	0	0	1	0	0	4635	838	29	2	9480	2	DNAH11	7	21813517	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71134	21813517	137325146	2183	27870										
DNAH11	0	genome.wustl.edu	37	chr7	21882184	21882184	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatcaggattggagataaaGaatgtgaatttaacaagaac	9	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	21882184	21882184	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	nonsense	c.10735	p.E3579*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	424	0	0	322	42	11.54	-	-	-	T	21882184	G	T	21882184	4	4	275	1	0	0	0	0	0	1	0	0	4635	943	33	2	10998	2	DNAH11	7	21882184	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68667	21882184	137256479	2184	27871										
RAPGEF5	0	genome.wustl.edu	37	chr7	22170702	22170702	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaaaagttttatttccttCatgaataaatgttacatctg	4	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	22170702	22170702	C	A	SNP	RAPGEF5	ENST00000344041	human	ensembl	69_37n	-1	known	nonsense	c.1975	p.E659*	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	208	0	0	106	29	21.48	-	-	-	A	22170702	C	A	22170702	4	1	275	1	0	0	0	0	0	1	0	0	13130	835	29	2	229	2	RAPGEF5	7	22170702	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	288518	22170702	136967961	2185	27872										
RAPGEF5	0	genome.wustl.edu	37	chr7	22190072	22190072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacatatattcgaccagatgCctcgagggatttggagatga	12	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	22190072	22190072	C	A	SNP	RAPGEF5	ENST00000344041	human	ensembl	69_37n	-1	known	missense	c.1378	p.A460S	0.022	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	181	0	0	149	21	12.28	-	-	-	A	22190072	C	A	22190072	3	1	275	1	0	0	0	0	1	0	0	0	13130	739	26	4	850	4	RAPGEF5	7	22190072	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19370	22190072	136948591	2186	27873										
RAPGEF5	0	genome.wustl.edu	37	chr7	22259538	22259538	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcaaaaactgatagttttCttttgccagcttctggacta	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	22259538	22259538	C	A	SNP	RAPGEF5	ENST00000344041	human	ensembl	69_37n	-1	known	nonsense	c.484	p.E162*	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	405	0	0	201	62	23.57	-	-	-	A	22259538	C	A	22259538	4	1	275	1	0	0	0	0	0	1	0	0	13130	922	32	2	1780	2	RAPGEF5	7	22259538	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69466	22259538	136879125	2187	27874										
FAM126A	0	genome.wustl.edu	37	chr7	23004069	23004069	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgttaacatttgcaccatGaatcctgaagaaactggtat	7	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	23004069	23004069	G	T	SNP	FAM126A	ENST00000440481	human	ensembl	69_37n	-1	putative	nonsense	c.863	p.S288*	1.000	pfam_Hyccin	pfam_Hyccin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM126A	HGNC	ENSG00000122591	239	0	0	165	20	10.81	-	-	-	T	23004069	G	T	23004069	4	4	275	1	0	0	0	0	0	1	0	0	5469	1281	45	2	873	2	FAM126A	7	23004069	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	744531	23004069	136134594	2188	27875										
GPNMB	0	genome.wustl.edu	37	chr7	23300272	23300272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccaccaatcatactgtgAatcacacgtatgtgctcaat	5	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	23300272	23300272	A	G	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	missense	c.898	p.N300D	0.990	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	290	0	0	247	36	12.72	-	-	-	G	23300272	A	G	23300272	3	3	275	1	0	0	0	0	1	0	0	0	6670	246	9	5	920	5	GPNMB	7	23300272	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	296203	23300272	135838391	2189	27876										
IGF2BP3	0	genome.wustl.edu	37	chr7	23391172	23391172	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctactttcaaggtgaaattCtctaactgaaatccattcag	6	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	23391172	23391172	C	T	SNP	IGF2BP3	ENST00000258729	human	ensembl	69_37n	-1	known	silent	c.435	p.E145	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231	72	0	0	33	11	25	-	-	-	T	23391172	C	T	23391172	2	4	275	1	0	0	0	0	0	0	0	1	7629	912	32	2		2	IGF2BP3	7	23391172	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90900	23391172	135747491	2190	27877										
TRA2A	0	genome.wustl.edu	37	chr7	23545763	23545763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttaaaacattacctgtatCggtaatcatagtcttcatat	5	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	23545763	23545763	C	T	SNP	TRA2A	ENST00000297071	human	ensembl	69_37n	-1	known	missense	c.764	p.R255Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548	184	0	0	137	43	23.89	-	-	-	T	23545763	C	T	23545763	3	4	275	1	0	0	0	0	1	0	0	0	16529	884	31	1	96	1	TRA2A	7	23545763	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	154591	23545763	135592900	2191	27878										
STK31	0	genome.wustl.edu	37	chr7	23793941	23793941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttaaaaataggcatgtcGacatcagtgtccgtttcgga	9	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	23793941	23793941	G	A	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.1141	p.D381N	0.135	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	235	0	0	141	60	29.85	-	-	-	A	23793941	G	A	23793941	3	1	275	1	0	0	0	0	1	0	0	0	15387	1058	37	1	1179	1	STK31	7	23793941	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248178	23793941	135344722	2192	27879										
C7orf31	0	genome.wustl.edu	37	chr7	25191291	25191291	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatatcaatcagttcatatCtataaggattacctgaaaat	5	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	25191291	25191291	C	A	SNP	C7orf31	ENST00000283905	human	ensembl	69_37n	-1	known	missense	c.608	p.R203I	1.000	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	237	0	0	194	37	16.02	-	-	-	A	25191291	C	A	25191291	3	1	275	1	0	0	0	0	1	0	0	0	2410	913	32	2	1180	2	C7orf31	7	25191291	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1397350	25191291	133947372	2193	27880										
HOXA4	0	genome.wustl.edu	37	chr7	27169007	27169007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtctttcttccacttcatcCtccggttctgaaaccagatc	6	14	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	27169007	27169007	C	A	SNP	HOXA4	ENST00000360046	human	ensembl	69_37n	-1	known	missense	c.800	p.R267M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia,pfscan_Homeodomain	-	no_errors	HOXA4	HGNC	ENSG00000197576	407	0	0	255	31	10.84	-	-	-	A	27169007	C	A	27169007	3	1	275	1	0	0	0	0	1	0	0	0	7345	681	24	4	166	4	HOXA4	7	27169007	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1977716	27169007	131969656	2194	27881										
HOXA9	0	genome.wustl.edu	37	chr7	27204557	27204557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcattgttttcagagaaggCgccttcgctgggttgttttt	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	27204557	27204557	C	T	SNP	HOXA9	ENST00000343483	human	ensembl	69_37n	-1	known	missense	c.520	p.A174T	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399	49	0	0	19	8	29.63	-	-	-	T	27204557	C	T	27204557	3	4	275	1	0	0	0	0	1	0	0	0	7349	768	27	1	306	1	HOXA9	7	27204557	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35550	27204557	131934106	2195	27882										
HOXA11	0	genome.wustl.edu	37	chr7	27222504	27222504	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttctgaaaccagattttgaCttgacgatcagtgaggttga	11	6	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	27222504	27222504	C	A	SNP	HOXA11	ENST00000006015	human	ensembl	69_37n	-1	known	missense	c.853	p.V285F	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXA11	HGNC	ENSG00000005073	44	0	0	17	4	19.05	-	-	-	A	27222504	C	A	27222504	3	1	275	1	0	0	0	0	1	0	0	0	7341	565	20	4	92	4	HOXA11	7	27222504	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17947	27222504	131916159	2196	27883										
HIBADH	0	genome.wustl.edu	37	chr7	27582704	27582704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacgtgaggttcccagatCgtgcagctcctacacctgaa	9	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	27582704	27582704	C	T	SNP	HIBADH	ENST00000265395	human	ensembl	69_37n	-1	known	missense	c.500	p.R167Q	0.998	pfam_6PGDH_NADP-bd,tigrfam_IsoBut3OH_DH	pfam_6PGDH_NADP-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,tigrfam_IsoBut3OH_DH	-	no_errors	HIBADH	HGNC	ENSG00000106049	462	0	0	267	46	14.7	-	-	-	T	27582704	C	T	27582704	3	4	275	1	0	0	0	0	1	0	0	0	7150	884	31	1	526	1	HIBADH	7	27582704	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	360200	27582704	131555959	2197	27884										
JAZF1	0	genome.wustl.edu	37	chr7	27934996	27934996	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcggctgaatcttcttcttTagggactcctgctctcggcg	10	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	27934996	27934996	T	G	SNP	JAZF1	ENST00000427814	human	ensembl	69_37n	-1	putative	nonstop	c.188	p.*63S	0.990	NULL	smart_Znf_C2H2-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	JAZF1	HGNC	ENSG00000153814	51	0	0	36	7	16.28	-	-	-	G	27934996	T	G	27934996	4	3	275	1	0	0	0	0	0	0	0	0	8000	1741	61	5	515	5	JAZF1	7	27934996	Nonstop_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	352292	27934996	131203667	2198	27885										
CREB5	0	genome.wustl.edu	37	chr7	28547355	28547355	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaggagagcagcaagcgGgtaggtttgcttggatggcc	18	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	28547355	28547355	G	T	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	silent	c.291	p.R97	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	166	0	0	113	20	15.04	-	-	-	T	28547355	G	T	28547355	2	4	275	1	0	0	0	0	0	0	0	1	3890	1246	43	4		4	CREB5	7	28547355	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	612359	28547355	130591308	2199	27886										
CPVL	0	genome.wustl.edu	37	chr7	29111955	29111955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatctccaatagcaattcCgttcaggttgatcttcacct	5	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	29111955	29111955	C	T	SNP	CPVL	ENST00000265394	human	ensembl	69_37n	-1	known	missense	c.694	p.G232R	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066	364	0	0	236	105	30.7	-	-	-	T	29111955	C	T	29111955	3	4	275	1	0	0	0	0	1	0	0	0	3865	661	23	1	760	1	CPVL	7	29111955	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	564600	29111955	130026708	2200	27887										
WIPF3	0	genome.wustl.edu	37	chr7	29915470	29915470	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacagacacctccagcttgCgaagggcagatccgaaaggc	12	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	29915470	29915470	C	T	SNP	WIPF3	ENST00000242140	human	ensembl	69_37n	1	known	nonsense	c.115	p.R39*	0.028	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF3	HGNC	ENSG00000122574	114	0	0	84	16	16	-	-	-	T	29915470	C	T	29915470	4	4	275	1	0	0	0	0	0	1	0	0	17466	760	27	1	121	1	WIPF3	7	29915470	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	803515	29915470	129223193	2201	27888										
GARS	0	genome.wustl.edu	37	chr7	30661111	30661111	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagctgagaaacctctgaaaGaacccatatcctttctggtc	7	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	30661111	30661111	G	T	SNP	GARS	ENST00000389266	human	ensembl	69_37n	1	known	nonsense	c.1462	p.E488*	1.000	pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105	208	0	0	145	20	12.12	-	-	-	T	30661111	G	T	30661111	4	4	275	1	0	0	0	0	0	1	0	0	6292	943	33	2	1504	2	GARS	7	30661111	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	745641	30661111	128477552	2202	27889										
CRHR2	0	genome.wustl.edu	37	chr7	30702425	30702425	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaagaagttggtcaccacGaagtagttgaagatggtggt	14	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	30702425	30702425	G	A	SNP	CRHR2	ENST00000348438	human	ensembl	69_37n	-1	known	silent	c.663	p.F221	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR2	HGNC	ENSG00000106113	68	0	0	58	12	17.14	-	-	-	A	30702425	G	A	30702425	2	1	275	1	0	0	0	0	0	0	0	1	3902	1049	37	1		1	CRHR2	7	30702425	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41314	30702425	128436238	2203	27890										
NEUROD6	0	genome.wustl.edu	37	chr7	31377880	31377880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcctcattaattatgaaAaactgcatttaattcatctt	2	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	31377880	31377880	A	C	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.1003	p.F335V	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	215	0	0	86	37	30.08	-	-	-	C	31377880	A	C	31377880	3	2	275	1	0	0	0	0	1	0	0	0	10423	14	1	5	14	5	NEUROD6	7	31377880	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	675455	31377880	127760783	2204	27891										
NEUROD6	0	genome.wustl.edu	37	chr7	31378230	31378230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtcccatgccctgggggaGtggtgagctcagggctgtgg	19	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	31378230	31378230	G	A	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.653	p.T218I	1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	134	0	0	68	29	29.9	-	-	-	A	31378230	G	A	31378230	3	1	275	1	0	0	0	0	1	0	0	0	10423	1029	36	4	364	4	NEUROD6	7	31378230	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	350	31378230	127760433	2205	27892										
CCDC129	0	genome.wustl.edu	37	chr7	31692417	31692417	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcaaattgtcctgttggaGaaaaggatgcagatgtcttc	11	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	31692417	31692417	G	T	SNP	CCDC129	ENST00000407970	human	ensembl	69_37n	1	known	nonsense	c.3109	p.E1037*	0.103	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	203	0	0	114	40	25.97	-	-	-	T	31692417	G	T	31692417	4	4	275	1	0	0	0	0	0	1	0	0	2789	943	33	2	3159	2	CCDC129	7	31692417	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	314187	31692417	127446246	2206	27893										
PDE1C	0	genome.wustl.edu	37	chr7	31887625	31887625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcaaaatattcatttcctCgtcatcttgcagaaggcgat	6	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	31887625	31887625	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	missense	c.937	p.E313K	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	207	0	0	141	47	25	-	-	-	T	31887625	C	T	31887625	3	4	275	1	0	0	0	0	1	0	0	0	11708	893	31	1	1003	1	PDE1C	7	31887625	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	195208	31887625	127251038	2207	27894										
RP9	0	genome.wustl.edu	37	chr7	33140157	33140157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actaaccttgataagcccagGaggaggtttttcgtaactgg	11	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	33140157	33140157	G	T	SNP	RP9	ENST00000297157	human	ensembl	69_37n	-1	known	missense	c.169	p.P57T	1.000	NULL	NULL	-	no_errors	RP9	HGNC	ENSG00000164610	145	0	0	91	36	28.35	-	-	-	T	33140157	G	T	33140157	3	4	275	1	0	0	0	0	1	0	0	0	13621	1174	41	2	516	2	RP9	7	33140157	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1252532	33140157	125998506	2208	27895										
BBS9	0	genome.wustl.edu	37	chr7	33303927	33303927	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtacttgcttttgcaacaGatgcagataaaaggcaggag	12	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	33303927	33303927	G	T	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.643	p.D215Y	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	112	0	0	67	18	21.18	-	-	-	T	33303927	G	T	33303927	3	4	275	1	0	0	0	0	1	0	0	0	1346	942	33	2	665	2	BBS9	7	33303927	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	163770	33303927	125834736	2209	27896										
BBS9	0	genome.wustl.edu	37	chr7	33573622	33573622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttgaagacttgcctgtcGaagagttctaaggagcaggc	13	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	33573622	33573622	G	A	SNP	BBS9	ENST00000434373	human	ensembl	69_37n	1	known	missense	c.1054	p.E352K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BBS9	HGNC	ENSG00000122507	257	0	0	160	24	13.04	-	-	-	A	33573622	G	A	33573622	3	1	275	1	0	0	0	0	1	0	0	0	1346	1045	37	1	2433	1	BBS9	7	33573622	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	269695	33573622	125565041	2210	27897										
BMPER	0	genome.wustl.edu	37	chr7	34091518	34091518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgggagctgcctctttcGaagtgatgtttatgacaatg	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	34091518	34091518	G	A	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	missense	c.722	p.R241Q	1.000	smart_VWF_C	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	231	0	0	186	33	15.07	-	-	-	A	34091518	G	A	34091518	3	1	275	1	0	0	0	0	1	0	0	0	1473	1058	37	1	752	1	BMPER	7	34091518	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	517896	34091518	125047145	2211	27898										
EEPD1	0	genome.wustl.edu	37	chr7	36338750	36338750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggactggagcaagaaggatGcccctcggaacggcagcggg	17	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	36338750	36338750	G	A	SNP	EEPD1	ENST00000242108	human	ensembl	69_37n	1	known	missense	c.1645	p.A549T	0.014	superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	205	0	0	122	16	11.43	-	-	-	A	36338750	G	A	36338750	3	1	275	1	0	0	0	0	1	0	0	0	4967	1319	46	4	1671	4	EEPD1	7	36338750	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2247232	36338750	122799913	2212	27899										
ELMO1	0	genome.wustl.edu	37	chr7	36917685	36917685	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtctccgtaatgcaggacTttgtgatttggcgaaagccg	12	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	36917685	36917685	T	G	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.1752	p.K584N	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	319	0	0	160	66	29.2	-	-	-	G	36917685	T	G	36917685	3	3	275	1	0	0	0	0	1	0	0	0	5102	1606	56	5	447	5	ELMO1	7	36917685	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	578935	36917685	122220978	2213	27900										
ELMO1	0	genome.wustl.edu	37	chr7	37262286	37262286	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaatagtataggtttggatTtcttgatctgacctgtaaag	10	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	37262286	37262286	T	G	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.714	p.E238D	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	317	0	0	214	28	11.52	-	-	-	G	37262286	T	G	37262286	3	3	275	1	0	0	0	0	1	0	0	0	5102	1838	64	5	1521	5	ELMO1	7	37262286	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	344601	37262286	121876377	2214	27901										
VPS41	0	genome.wustl.edu	37	chr7	38805245	38805245	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtgctgcatttttcccaaGaattttctggcatttgctgg	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	38805245	38805245	G	T	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.1264	p.L422I	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	211	0	0	152	23	13.14	-	-	-	T	38805245	G	T	38805245	3	4	275	1	0	0	0	0	1	0	0	0	17307	942	33	2	1356	2	VPS41	7	38805245	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1542959	38805245	120333418	2215	27902										
POU6F2	0	genome.wustl.edu	37	chr7	39472786	39472786	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccagctcctcacaaacgcCcagggccagatcatcgccac	7	20	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	39472786	39472786	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	silent	c.1137	p.A379	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	103	0	0	81	19	19	-	-	-	T	39472786	C	T	39472786	2	4	275	1	0	0	0	0	0	0	0	1	12358	610	22	4		4	POU6F2	7	39472786	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	667541	39472786	119665877	2216	27903										
C7orf10	0	genome.wustl.edu	37	chr7	40277282	40277282	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgagctggttatgatgctgTtgcctcggctgtttctggtc	14	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	40277282	40277282	T	C	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	1	known	missense	c.554	p.V185A	1.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	518	0	0	317	92	22.49	-	-	-	C	40277282	T	C	40277282	3	2	275	1	0	0	0	0	1	0	0	0	2399	1725	60	5	469	5	C7orf10	7	40277282	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	804496	40277282	118861381	2217	27904										
INHBA	0	genome.wustl.edu	37	chr7	41739756	41739756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtaccggctgggtgacatCgggtctcttcttcaagtgca	14	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	41739756	41739756	C	T	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	missense	c.217	p.D73N	1.000	pfam_TGF-b_N,prints_Inhibin_betaA	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	70	0	0	43	6	11.76	-	-	-	T	41739756	C	T	41739756	3	4	275	1	0	0	0	0	1	0	0	0	7795	884	31	1	1071	1	INHBA	7	41739756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1462474	41739756	117398907	2218	27905										
HECW1	0	genome.wustl.edu	37	chr7	43484065	43484065	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggagaccagggcatggtcTctgtgggacctgaaggggct	17	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	43484065	43484065	T	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.1294	p.S432T	0.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	33	0	0	11	6	35.29	-	-	-	A	43484065	T	A	43484065	3	1	275	1	0	0	0	0	1	0	0	0	7093	1551	54	5	1328	5	HECW1	7	43484065	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1744309	43484065	115654598	2219	27906										
HECW1	0	genome.wustl.edu	37	chr7	43484778	43484778	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcaaggcggggaccacagTtgcgagggctgtgacgcgtc	18	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	43484778	43484778	T	C	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.2007	p.S669	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	18	0	0	10	5	31.25	-	-	-	C	43484778	T	C	43484778	2	2	275	1	0	0	0	0	0	0	0	1	7093	1722	60	5		5	HECW1	7	43484778	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	713	43484778	115653885	2220	27907										
HECW1	0	genome.wustl.edu	37	chr7	43506070	43506070	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggagagaagggtcactttCtccagtgaactcacaaaaaa	9	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	43506070	43506070	C	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.2816	p.S939Y	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	193	0	0	153	27	15	-	-	-	A	43506070	C	A	43506070	3	1	275	1	0	0	0	0	1	0	0	0	7093	913	32	2	2866	2	HECW1	7	43506070	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21292	43506070	115632593	2221	27908										
BLVRA	0	genome.wustl.edu	37	chr7	43830886	43830886	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatggagtccagcagatttCtttggaggatgctctttcca	11	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	43830886	43830886	C	A	SNP	BLVRA	ENST00000265523	human	ensembl	69_37n	1	known	missense	c.173	p.S58Y	1.000	pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605	126	0	0	96	12	11.11	-	-	-	A	43830886	C	A	43830886	3	1	275	1	0	0	0	0	1	0	0	0	1456	913	32	2	183	2	BLVRA	7	43830886	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	324816	43830886	115307777	2222	27909										
CAMK2B	0	genome.wustl.edu	37	chr7	44283066	44283066	+	Missense_Mutation	SNP	C	C	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcacctcgatagctaggcCgaagtctgccagcttcactg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	44283066	44283066	C	A	SNP	CAMK2B	ENST00000395749	human	ensembl	69_37n	-1	known	missense	c.475	p.G159C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404	61	0	0	39	5	11.36	-	-	-	A	44283066	C	A	44283066	3	1	275	1	0	0	0	0	1	0	0	0	2625	652	23	3	1596	3	CAMK2B	7	44283066	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	452180	44283066	114855597	2223	27910	238	2								
CAMK2B	0	genome.wustl.edu	37	chr7	44283067	44283067	+	Silent	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcacctcgatagctaggccGaagtctgccagcttcactgc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	44283067	44283067	G	A	SNP	CAMK2B	ENST00000395749	human	ensembl	69_37n	-1	known	silent	c.474	p.F158	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404	61	0	0	31	12	27.27	-	-	-	A	44283067	G	A	44283067	2	1	275	1	0	0	0	0	0	0	0	1	2625	1049	37	1		1	CAMK2B	7	44283067	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1	44283067	114855596	2224	27911	238	2								
ADCY1	0	genome.wustl.edu	37	chr7	45748058	45748058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacaacgactttgtcctccGagttggtatgtggctctaaa	9	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	45748058	45748058	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	missense	c.2927	p.R976Q	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	136	0	0	84	46	35.11	-	-	-	A	45748058	G	A	45748058	3	1	275	1	0	0	0	0	1	0	0	0	292	1058	37	1	2997	1	ADCY1	7	45748058	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1464991	45748058	113390605	2225	27912										
TNS3	0	genome.wustl.edu	37	chr7	47342705	47342705	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctccgaggcccgcttcttCtcagggaggggtggctgccc	14	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47342705	47342705	C	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.3300	p.E1100D	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	77	0	0	21	4	16	-	-	-	A	47342705	C	A	47342705	3	1	275	1	0	0	0	0	1	0	0	0	16439	912	32	2	1077	2	TNS3	7	47342705	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1594647	47342705	111795958	2226	27913										
TNS3	0	genome.wustl.edu	37	chr7	47436496	47436496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggtcgttgtacaagtgttCggaccctgcacagagcacag	13	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47436496	47436496	C	T	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.925	p.E309K	0.858	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	270	0	0	204	67	24.72	-	-	-	T	47436496	C	T	47436496	3	4	275	1	0	0	0	0	1	0	0	0	16439	893	31	1	3476	1	TNS3	7	47436496	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	93791	47436496	111702167	2227	27914										
TNS3	0	genome.wustl.edu	37	chr7	47463778	47463778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctgtcaagggcctggtCggcgctgaaggggagagaga	17	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47463778	47463778	C	T	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.394	p.D132N	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	108	0	0	66	27	29.03	-	-	-	T	47463778	C	T	47463778	3	4	275	1	0	0	0	0	1	0	0	0	16439	884	31	1	4031	1	TNS3	7	47463778	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27282	47463778	111674885	2228	27915										
PKD1L1	0	genome.wustl.edu	37	chr7	47855019	47855019	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccagtcccaccagtcagcGatgtttctcaggccacccaa	7	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47855019	47855019	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	silent	c.7002	p.I2334	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	96	0	0	62	8	11.43	-	-	-	A	47855019	G	A	47855019	2	1	275	1	0	0	0	0	0	0	0	1	12038	1048	37	1		1	PKD1L1	7	47855019	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	391241	47855019	111283644	2229	27916										
PKD1L1	0	genome.wustl.edu	37	chr7	47869079	47869079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgaagagaaggggaggcGagtccaggaacgttctgcca	16	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47869079	47869079	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.6679	p.R2227C	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	212	0	0	112	14	11.11	-	-	-	A	47869079	G	A	47869079	3	1	275	1	0	0	0	0	1	0	0	0	12038	1058	37	1	1926	1	PKD1L1	7	47869079	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14060	47869079	111269584	2230	27917										
PKD1L1	0	genome.wustl.edu	37	chr7	47869657	47869657	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccataagtggctgggtgatgAaaatacagcagaccacggag	13	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47869657	47869657	A	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.6539	p.F2180Y	0.001	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	43	0	0	18	6	25	-	-	-	T	47869657	A	T	47869657	3	4	275	1	0	0	0	0	1	0	0	0	12038	246	9	5	2070	5	PKD1L1	7	47869657	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	578	47869657	111269006	2231	27918										
PKD1L1	0	genome.wustl.edu	37	chr7	47904823	47904823	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcacttaccttattagaGaagctcacgaggtccctcaa	7	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	47904823	47904823	G	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.4140	p.F1380L	0.001	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	255	0	0	184	28	13.21	-	-	-	T	47904823	G	T	47904823	3	4	275	1	0	0	0	0	1	0	0	0	12038	933	33	2	4537	2	PKD1L1	7	47904823	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35166	47904823	111233840	2232	27919										
C7orf57	0	genome.wustl.edu	37	chr7	48086097	48086097	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggattacatggttcatgaaGaatttaaccccgatcaagcc	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	48086097	48086097	G	T	SNP	C7orf57	ENST00000348904	human	ensembl	69_37n	1	known	nonsense	c.391	p.E131*	1.000	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746	300	2	0.66	218	32	12.75	-	-	-	T	48086097	G	T	48086097	4	4	275	1	0	0	0	0	0	1	0	0	2427	943	33	2	405	2	C7orf57	7	48086097	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181274	48086097	111052566	2233	27920										
ABCA13	0	genome.wustl.edu	37	chr7	48416085	48416085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctggaacaagggggcatgAcatttggctgggtttgctgg	16	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	48416085	48416085	A	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.11251	p.T3751A	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	467	0	0	236	32	11.9	-	-	-	G	48416085	A	G	48416085	3	3	275	1	0	0	0	0	1	0	0	0	31	275	10	5	11218	5	ABCA13	7	48416085	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	329988	48416085	110722578	2234	27921										
ZPBP	0	genome.wustl.edu	37	chr7	50121432	50121432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtctatcagttcagcatttCgcagttgttgcgttacacat	9	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	50121432	50121432	C	T	SNP	ZPBP	ENST00000046087	human	ensembl	69_37n	-1	known	missense	c.272	p.R91Q	0.995	pfam_Sp38-bd,pfscan_Ig-like	pfam_Sp38-bd,pfscan_Ig-like	-	no_errors	ZPBP	HGNC	ENSG00000042813	547	0	0	332	49	12.86	-	-	-	T	50121432	C	T	50121432	3	4	275	1	0	0	0	0	1	0	0	0	18312	884	31	1	807	1	ZPBP	7	50121432	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1705347	50121432	109017231	2235	27922										
GRB10	0	genome.wustl.edu	37	chr7	50686924	50686924	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctgaatagaaatttactCtcactggccatggtactctc	6	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	50686924	50686924	C	T	SNP	GRB10	ENST00000398812	human	ensembl	69_37n	-1	known	silent	c.720	p.E240	0.980	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070	170	0	0	95	34	26.15	-	-	-	T	50686924	C	T	50686924	2	4	275	1	0	0	0	0	0	0	0	1	6807	912	32	2		2	GRB10	7	50686924	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	565492	50686924	108451739	2236	27923										
ZNF713	0	genome.wustl.edu	37	chr7	56007596	56007596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggaaagcctttagccagaGtgcacaccttaatcaacaca	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	56007596	56007596	G	A	SNP	ZNF713	ENST00000429591	human	ensembl	69_37n	1	known	missense	c.1190	p.S397N	0.117	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF713	HGNC	ENSG00000178665	47	0	0	60	12	16.67	-	-	-	A	56007596	G	A	56007596	3	1	275	1	0	0	0	0	1	0	0	0	18213	1029	36	4	1204	4	ZNF713	7	56007596	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5320672	56007596	103131067	2237	27924										
SUMF2	0	genome.wustl.edu	37	chr7	56141862	56141862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtcggtctccttctttttCgcagtctgtactctggtggc	10	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	56141862	56141862	C	T	SNP	SUMF2	ENST00000451338	human	ensembl	69_37n	1	novel	missense	c.386	p.S129L	0.069	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_start_codon:no_stop_codon	SUMF2	HGNC	ENSG00000129103	474	0	0	398	50	11.14	-	-	-	T	56141862	C	T	56141862	3	4	275	1	0	0	0	0	1	0	0	0	15477	899	31	1		1	SUMF2	7	56141862	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134266	56141862	102996801	2238	27925										
ZNF479	0	genome.wustl.edu	37	chr7	57188127	57188127	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaggaccagctaaaggctTtgccacattcctcacacctg	8	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	57188127	57188127	T	C	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.995	p.K332R	0.568	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	52	0	0	51	11	17.74	-	-	-	C	57188127	T	C	57188127	3	2	275	1	0	0	0	0	1	0	0	0	18029	1841	64	5	583	5	ZNF479	7	57188127	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1046265	57188127	101950536	2239	27926										
ZNF679	0	genome.wustl.edu	37	chr7	63726631	63726631	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacatcagataattcataCtagggagaattcctaccaat	5	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	63726631	63726631	C	A	SNP	ZNF679	ENST00000255746	human	ensembl	69_37n	1	known	missense	c.620	p.T207N	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123	162	0	0	193	37	16.09	-	-	-	A	63726631	C	A	63726631	3	1	275	1	0	0	0	0	1	0	0	0	18182	565	20	4	634	4	ZNF679	7	63726631	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6538504	63726631	95412032	2240	27927										
ZNF680	0	genome.wustl.edu	37	chr7	63982164	63982164	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgccacattcttcacatTtgaagggtttctctccagta	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	63982164	63982164	T	G	SNP	ZNF680	ENST00000309683	human	ensembl	69_37n	-1	known	missense	c.968	p.K323T	0.535	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041	53	0	0	35	11	23.91	-	-	-	G	63982164	T	G	63982164	3	3	275	1	0	0	0	0	1	0	0	0	18183	1841	64	5	628	5	ZNF680	7	63982164	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	255533	63982164	95156499	2241	27928										
ZNF273	0	genome.wustl.edu	37	chr7	64389097	64389097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacaaatgtgaagaatgtgGcagtgcctttagggcattct	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	64389097	64389097	G	T	SNP	ZNF273	ENST00000476120	human	ensembl	69_37n	1	known	missense	c.1391	p.G464V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF273	HGNC	ENSG00000198039	26	0	0	37	10	21.28	-	-	-	T	64389097	G	T	64389097	3	4	275	1	0	0	0	0	1	0	0	0	17904	1203	42	4	1405	4	ZNF273	7	64389097	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406933	64389097	94749566	2242	27929										
ZNF117	0	genome.wustl.edu	37	chr7	64438619	64438619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattcttcacatttgtaggGtttctctccagtatgaattc	6	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	64438619	64438619	G	C	SNP	ZNF117	ENST00000282869	human	ensembl	69_37n	-1	known	missense	c.1330	p.P444A	0.880	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF117	HGNC	ENSG00000152926	121	0	0	95	17	15.04	-	-	-	C	64438619	G	C	64438619	3	2	275	1	0	0	0	0	1	0	0	0	17813	1261	44	4	125	4	ZNF117	7	64438619	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49522	64438619	94700044	2243	27930										
ZNF92	0	genome.wustl.edu	37	chr7	64863380	64863380	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagctaagaaaagaccataAaagtgtggatgcatgtaagg	11	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	64863380	64863380	A	C	SNP	ZNF92	ENST00000328747	human	ensembl	69_37n	1	known	missense	c.353	p.K118T	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757	191	0	0	190	33	14.8	-	-	-	C	64863380	A	C	64863380	3	2	275	1	0	0	0	0	1	0	0	0	18294	14	1	5	367	5	ZNF92	7	64863380	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	424761	64863380	94275283	2244	27931										
TYW1	0	genome.wustl.edu	37	chr7	66660289	66660289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaaattgcatgtgaacacGaacactctaattgcctcctg	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	66660289	66660289	G	A	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	missense	c.1942	p.E648K	1.000	pfam_tRNA_wybutosine-synth	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874	697	3	0.43	432	92	17.52	-	-	-	A	66660289	G	A	66660289	3	1	275	1	0	0	0	0	1	0	0	0	16915	1059	37	1	2000	1	TYW1	7	66660289	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1796909	66660289	92478374	2245	27932										
POM121	0	genome.wustl.edu	37	chr7	72416246	72416246	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgttggtgttgcacctttCggtaagcagcaagccaccct	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72416246	72416246	C	T	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	silent	c.3651	p.F1217	0.956	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	115	0	0	75	25	24.75	-	-	-	T	72416246	C	T	72416246	2	4	275	1	0	0	0	0	0	0	0	1	12313	898	31	1		1	POM121	7	72416246	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5755957	72416246	86722417	2246	27933										
TRIM50	0	genome.wustl.edu	37	chr7	72732851	72732851	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtggtggtcctcattgccGaactgttccagcacacactc	9	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72732851	72732851	G	A	SNP	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	silent	c.696	p.F232	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	248	0	0	153	49	24.26	-	-	-	A	72732851	G	A	72732851	2	1	275	1	0	0	0	0	0	0	0	1	16622	1049	37	1		1	TRIM50	7	72732851	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	316605	72732851	86405812	2247	27934										
BAZ1B	0	genome.wustl.edu	37	chr7	72873871	72873871	+	Missense_Mutation	SNP	C	C	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacaacaaaatacctttgCttcctctaccattttcttct							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72873871	72873871	C	A	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.3427	p.A1143S	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	607	0	0	459	55	10.7	-	-	-	A	72873871	C	A	72873871	3	1	275	1	0	0	0	0	1	0	0	0	1334	797	28	4	1052	4	BAZ1B	7	72873871	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141020	72873871	86264792	2248	27935	239	2								
BAZ1B	0	genome.wustl.edu	37	chr7	72873879	72873879	+	Missense_Mutation	SNP	A	A	G													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatacctttgcttcctctAccattttcttctcttcatcc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72873879	72873879	A	G	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.3419	p.V1140A	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	644	2	0.31	402	182	31.06	-	-	-	G	72873879	A	G	72873879	3	3	275	1	0	0	0	0	1	0	0	0	1334	391	14	5	1060	5	BAZ1B	7	72873879	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	8	72873879	86264784	2249	27936	239	2								
BAZ1B	0	genome.wustl.edu	37	chr7	72891324	72891324	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctcaaacttcacaatttCttttttcctatcagttttgc	5	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72891324	72891324	C	A	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	nonsense	c.2467	p.E823*	0.995	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	339	0	0	283	33	10.44	-	-	-	A	72891324	C	A	72891324	4	1	275	1	0	0	0	0	0	1	0	0	1334	922	32	2	2036	2	BAZ1B	7	72891324	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17445	72891324	86247339	2250	27937										
BAZ1B	0	genome.wustl.edu	37	chr7	72892235	72892235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgtttttgaacaagacttCgcaattcttctgggagacga	10	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72892235	72892235	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.1556	p.R519Q	0.912	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	262	0	0	164	29	14.95	-	-	-	T	72892235	C	T	72892235	3	4	275	1	0	0	0	0	1	0	0	0	1334	884	31	1	2947	1	BAZ1B	7	72892235	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	911	72892235	86246428	2251	27938										
BAZ1B	0	genome.wustl.edu	37	chr7	72892480	72892480	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccatatccaacaaagtcatCtgcttcattttggttttagg	7	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	72892480	72892480	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	silent	c.1311	p.Q437	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	267	0	0	177	64	26.56	-	-	-	T	72892480	C	T	72892480	2	4	275	1	0	0	0	0	0	0	0	1	1334	912	32	2		2	BAZ1B	7	72892480	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245	72892480	86246183	2252	27939										
STX1A	0	genome.wustl.edu	37	chr7	73123005	73123005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgatcttgtcaatgaagcctCgaatctcctccacctgcgga	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	73123005	73123005	C	T	SNP	STX1A	ENST00000222812	human	ensembl	69_37n	-1	known	missense	c.122	p.R41Q	0.999	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1A	HGNC	ENSG00000106089	88	0	0	46	11	19.3	-	-	-	T	73123005	C	T	73123005	3	4	275	1	0	0	0	0	1	0	0	0	15434	884	31	1	776	1	STX1A	7	73123005	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	230525	73123005	86015658	2253	27940										
CLIP2	0	genome.wustl.edu	37	chr7	73790669	73790669	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcgcccagcagaaggagatCggcgagctgaaggcagtgat	17	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	73790669	73790669	C	T	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	silent	c.1938	p.I646	0.063	superfamily_t-SNARE	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	64	0	0	34	5	12.82	-	-	-	T	73790669	C	T	73790669	2	4	275	1	0	0	0	0	0	0	0	1	3563	874	31	1		1	CLIP2	7	73790669	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	667664	73790669	85347994	2254	27941										
SRCRB4D	0	genome.wustl.edu	37	chr7	76028110	76028110	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgggggctgcgttggcaaGaattctggaaaggaagtgaa	17	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	76028110	76028110	G	A	SNP	SRCRB4D	ENST00000275560	human	ensembl	69_37n	-1	known	silent	c.480	p.F160	0.997	superfamily_Srcr_rcpt-rel	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	SRCRB4D	HGNC	ENSG00000146700	214	0	0	140	57	28.93	-	-	-	A	76028110	G	A	76028110	2	1	275	1	0	0	0	0	0	0	0	1	15228	933	33	2		2	SRCRB4D	7	76028110	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2237441	76028110	83110553	2255	27942										
CCDC146	0	genome.wustl.edu	37	chr7	76922411	76922411	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcatcttcacttgcaattCcaggatagaaaaaggtctgc	7	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	76922411	76922411	C	A	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	missense	c.2558	p.S853Y	0.230	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	372	1	0.27	254	45	15.05	-	-	-	A	76922411	C	A	76922411	3	1	275	1	0	0	0	0	1	0	0	0	2805	855	30	2	2624	2	CCDC146	7	76922411	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	894301	76922411	82216252	2256	27943										
RSBN1L	0	genome.wustl.edu	37	chr7	77407726	77407726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcttagaagtagttcaacGaatgcagttagatttacatg	8	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	77407726	77407726	G	A	SNP	RSBN1L	ENST00000334955	human	ensembl	69_37n	1	known	missense	c.1865	p.R622Q	1.000	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257	244	0	0	138	59	29.8	-	-	-	A	77407726	G	A	77407726	3	1	275	1	0	0	0	0	1	0	0	0	13783	1058	37	1	1891	1	RSBN1L	7	77407726	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	485315	77407726	81730937	2257	27944										
MAGI2	0	genome.wustl.edu	37	chr7	77975278	77975278	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggggctttgttccaagttCtgtgtggggcatgttatgtt	14	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	77975278	77975278	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.1186	p.E396K	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	986	0	0	695	96	12.14	-	-	-	T	77975278	C	T	77975278	3	4	275	1	0	0	0	0	1	0	0	0	9262	922	32	2	3241	2	MAGI2	7	77975278	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	567552	77975278	81163385	2258	27945										
GNAI1	0	genome.wustl.edu	37	chr7	79846795	79846795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaaaataatctaaaagatTgtggtctcttttaagttttg	6	3	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	79846795	79846795	T	G	SNP	GNAI1	ENST00000351004	human	ensembl	69_37n	1	known	missense	c.1051	p.C351G	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su,prints_Gprotein_alpha_I	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_GproteinA	-	no_errors	GNAI1	HGNC	ENSG00000127955	227	0	0	200	50	19.92	-	-	-	G	79846795	T	G	79846795	3	3	275	1	0	0	0	0	1	0	0	0	6556	1812	63	5	1081	5	GNAI1	7	79846795	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1871517	79846795	79291868	2259	27946										
HGF	0	genome.wustl.edu	37	chr7	81339469	81339469	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctattaataattacctgtatCtcaaactaaccatccatcct	1	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	81339469	81339469	C	A	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.1535	p.R512I	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	329	0	0	197	53	21.2	-	-	-	A	81339469	C	A	81339469	3	1	275	1	0	0	0	0	1	0	0	0	7136	913	32	2	675	2	HGF	7	81339469	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1492674	81339469	77799194	2260	27947										
CACNA2D1	0	genome.wustl.edu	37	chr7	81593599	81593599	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgactgataatcataagatTtgttaaaagcataaactgat	6	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	81593599	81593599	T	A	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.2687	p.K896I	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	216	0	0	167	25	12.95	-	-	-	A	81593599	T	A	81593599	3	1	275	1	0	0	0	0	1	0	0	0	2573	1841	64	5	652	5	CACNA2D1	7	81593599	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	254130	81593599	77545064	2261	27948										
CACNA2D1	0	genome.wustl.edu	37	chr7	81601162	81601162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcatcaagcaagactctaTtaatcaaatccgcgttacct	5	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	81601162	81601162	T	C	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.2108	p.N703S	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	149	0	0	85	29	25.44	-	-	-	C	81601162	T	C	81601162	3	2	275	1	0	0	0	0	1	0	0	0	2573	1493	52	5	1259	5	CACNA2D1	7	81601162	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	7563	81601162	77537501	2262	27949										
CACNA2D1	0	genome.wustl.edu	37	chr7	81643792	81643792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactgaaaacgtgaatacacGtacctggatgaattgaaaaa	8	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	81643792	81643792	G	A	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.1147	p.R383C	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	165	0	0	104	21	16.8	-	-	-	A	81643792	G	A	81643792	3	1	275	1	0	0	0	0	1	0	0	0	2573	1145	40	1	2236	1	CACNA2D1	7	81643792	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42630	81643792	77494871	2263	27950										
PCLO	0	genome.wustl.edu	37	chr7	82582551	82582552	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtttctgtgagggatttggINSaaaatcttggtgaagacttg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	82582551	82582552	-	A	INS	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7718_7717	p.S2573fs	1.000:0.994	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	166	0	0	115	15	11.54	-	-	-	A	82582552	-	A	82582551	7	5	275	1	0	1	1	0	0	0	0	0	11656	1174	41	0	7811	0	PCLO	7	82582551	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	938759	82582551	76556112	2264	27951										
PCLO	0	genome.wustl.edu	37	chr7	82785335	82785335	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttgttgtaaaggaggttTtatgattccttcaggttttc	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	82785335	82785335	T	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.622	p.K208Q	0.998	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	364	0	0	207	103	33.23	-	-	-	G	82785335	T	G	82785335	3	3	275	1	0	0	0	0	1	0	0	0	11656	1850	64	5	14919	5	PCLO	7	82785335	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	202784	82785335	76353328	2265	27952										
SEMA3E	0	genome.wustl.edu	37	chr7	83035376	83035376	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgccctcctacatcattCtgtgaaaaccaaaaaggagg	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	83035376	83035376	C	A	SNP	SEMA3E	ENST00000307792	human	ensembl	69_37n	-1	known	splice_site	c.814-1	e8-1	1.000	-	-	-	no_errors	SEMA3E	HGNC	ENSG00000170381	290	0	0	154	55	26.32	-	-	-	A	83035376	C	A	83035376	5	1	275	1	0	0	0	0	0	0	1	0	14116	927	32	2	1554	2	SEMA3E	7	83035376	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	250041	83035376	76103287	2266	27953										
SEMA3D	0	genome.wustl.edu	37	chr7	84629132	84629132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccttcttctgcaaacttCgaatcagtagcccatattcc	4	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	84629132	84629132	C	T	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	missense	c.1958	p.R653Q	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	129	0	0	72	17	19.1	-	-	-	T	84629132	C	T	84629132	3	4	275	1	0	0	0	0	1	0	0	0	14115	884	31	1	379	1	SEMA3D	7	84629132	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1593756	84629132	74509531	2267	27954										
SEMA3D	0	genome.wustl.edu	37	chr7	84697514	84697514	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattgatcttacctgtcatTactgaagcaaaaggctgctg	8	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	84697514	84697514	T	C	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	silent	c.582	p.V194	0.985	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	538	0	0	392	59	13.08	-	-	-	C	84697514	T	C	84697514	2	2	275	1	0	0	0	0	0	0	0	1	14115	1741	61	5		5	SEMA3D	7	84697514	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	68382	84697514	74441149	2268	27955										
KIAA1324L	0	genome.wustl.edu	37	chr7	86544058	86544058	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcttgaccctgattagttCtctggaatgcccatgtaaat	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	86544058	86544058	C	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.1712	p.R571I	1.000	superfamily_Growth_fac_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	553	0	0	270	73	21.28	-	-	-	A	86544058	C	A	86544058	3	1	275	1	0	0	0	0	1	0	0	0	8276	913	32	2	1417	2	KIAA1324L	7	86544058	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1846544	86544058	72594605	2269	27956										
CROT	0	genome.wustl.edu	37	chr7	87027869	87027869	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcctgttcagcctggaaatCctgtcccgagactgatgcgg	13	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	87027869	87027869	C	T	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	missense	c.1748	p.S583F	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	301	0	0	173	52	23.01	-	-	-	T	87027869	C	T	87027869	3	4	275	1	0	0	0	0	1	0	0	0	3924	855	30	2	1898	2	CROT	7	87027869	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	483811	87027869	72110794	2270	27957										
ABCB4	0	genome.wustl.edu	37	chr7	87037515	87037515	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggtgggatagttgaacacGacttcattaaatgttatatt	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	87037515	87037515	G	A	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	silent	c.3117	p.V1039	0.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	313	0	0	195	57	22.62	-	-	-	A	87037515	G	A	87037515	2	1	275	1	0	0	0	0	0	0	0	1	43	1045	37	1		1	ABCB4	7	87037515	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9646	87037515	72101148	2271	27958										
ABCB4	0	genome.wustl.edu	37	chr7	87041264	87041264	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgagatatgcaccaaatcGaaaacaaccggcataggaaa	8	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	87041264	87041264	G	A	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	nonsense	c.2869	p.R957*	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	135	0	0	73	15	17.05	-	-	-	A	87041264	G	A	87041264	4	1	275	1	0	0	0	0	0	1	0	0	43	1066	37	1	1015	1	ABCB4	7	87041264	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3749	87041264	72097399	2272	27959										
RUNDC3B	0	genome.wustl.edu	37	chr7	87407141	87407141	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaagaactcttacgacttCgagagaaccaactatctgaa	7	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	87407141	87407141	C	T	SNP	RUNDC3B	ENST00000338056	human	ensembl	69_37n	1	known	nonsense	c.877	p.R293*	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784	177	1	0.56	84	31	26.96	-	-	-	T	87407141	C	T	87407141	4	4	275	1	0	0	0	0	0	1	0	0	13831	876	31	1	911	1	RUNDC3B	7	87407141	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	365877	87407141	71731522	2273	27960										
CDK14	0	genome.wustl.edu	37	chr7	90547038	90547038	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttaaagctggcagatttCggtaggaaagcagttaatta	12	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	90547038	90547038	C	T	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	silent	c.825	p.F275	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	236	0	0	176	38	17.76	-	-	-	T	90547038	C	T	90547038	2	4	275	1	0	0	0	0	0	0	0	1	3159	898	31	1		1	CDK14	7	90547038	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3139897	90547038	68591625	2274	27961										
AKAP9	0	genome.wustl.edu	37	chr7	91630601	91630601	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaattaataagacaacacaTggcacagatggaggaaatga	10	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91630601	91630601	T	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.1406	p.M469T	0.290	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	93	0	0	81	17	17.35	-	-	-	C	91630601	T	C	91630601	3	2	275	1	0	0	0	0	1	0	0	0	459	1464	51	5	1400	5	AKAP9	7	91630601	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1083563	91630601	67508062	2275	27962										
AKAP9	0	genome.wustl.edu	37	chr7	91630970	91630970	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagattgtttctgcatctgAatccagaaaggaactagaat	9	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91630970	91630970	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.1775	p.E592A	0.906	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	80	0	0	85	27	24.11	-	-	-	C	91630970	A	C	91630970	3	2	275	1	0	0	0	0	1	0	0	0	459	246	9	5	1769	5	AKAP9	7	91630970	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	369	91630970	67507693	2276	27963										
AKAP9	0	genome.wustl.edu	37	chr7	91631472	91631472	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgaacaagaagttcaagaAttacaacttaaaacagaatt	5	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91631472	91631472	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.2277	p.E759D	0.999	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	74	0	0	66	11	14.29	-	-	-	C	91631472	A	C	91631472	3	2	275	1	0	0	0	0	1	0	0	0	459	98	4	5	2271	5	AKAP9	7	91631472	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	502	91631472	67507191	2277	27964										
AKAP9	0	genome.wustl.edu	37	chr7	91659282	91659282	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctggaagttgtgtgaaaAagaatattgatggtacaata	10	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91659282	91659282	A	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	nonsense	c.4258	p.K1420*	0.077	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	321	0	0	190	26	11.98	-	-	-	T	91659282	A	T	91659282	4	4	275	1	0	0	0	0	0	1	0	0	459	15	1	5	4280	5	AKAP9	7	91659282	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	27810	91659282	67479381	2278	27965										
AKAP9	0	genome.wustl.edu	37	chr7	91682177	91682177	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttgctggaactgaaataGaccctgaaaatgaagaactt	9	6	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91682177	91682177	G	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.5542	p.D1848Y	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	162	0	0	113	13	10.32	-	-	-	T	91682177	G	T	91682177	3	4	275	1	0	0	0	0	1	0	0	0	459	942	33	2	5592	2	AKAP9	7	91682177	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22895	91682177	67456486	2279	27966										
AKAP9	0	genome.wustl.edu	37	chr7	91726195	91726195	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttgaatctgagaaagttCgaattcgggaaatgagtagt	11	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91726195	91726195	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	nonsense	c.9934	p.R3312*	0.998	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	199	0	0	114	35	23.49	-	-	-	T	91726195	C	T	91726195	4	4	275	1	0	0	0	0	0	1	0	0	459	876	31	1	10084	1	AKAP9	7	91726195	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44018	91726195	67412468	2280	27967										
KRIT1	0	genome.wustl.edu	37	chr7	91852270	91852270	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgatatgacccatccattCtgtatattcgaactttttca	4	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	91852270	91852270	C	A	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.1277	p.R426I	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	99	0	0	97	14	12.61	-	-	-	A	91852270	C	A	91852270	3	1	275	1	0	0	0	0	1	0	0	0	8498	913	32	2	961	2	KRIT1	7	91852270	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	126075	91852270	67286393	2281	27968										
PEX1	0	genome.wustl.edu	37	chr7	92151518	92151518	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccttccacccagctcaaGaatgcaggctggtgactcca	9	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92151518	92151518	G	T	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.171	p.F57L	1.000	pfam_Peroxisome_synth_fac_1_a/b,superfamily_Asp_de-COase-like_fold	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	132	0	0	92	25	21.37	-	-	-	T	92151518	G	T	92151518	3	4	275	1	0	0	0	0	1	0	0	0	11809	933	33	2	3772	2	PEX1	7	92151518	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	299248	92151518	66987145	2282	27969										
SAMD9	0	genome.wustl.edu	37	chr7	92731165	92731165	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattggttgcaagacttctcGaagctgatcttttagttttt	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92731165	92731165	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	nonsense	c.4246	p.R1416*	0.095	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	130	0	0	114	21	15.56	-	-	-	A	92731165	G	A	92731165	4	1	275	1	0	0	0	0	0	1	0	0	13912	1066	37	1	527	1	SAMD9	7	92731165	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	579647	92731165	66407498	2283	27970										
SAMD9L	0	genome.wustl.edu	37	chr7	92761792	92761792	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcagtttgcctttgggattCtttgaaagctcttgaggctt	10	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92761792	92761792	C	A	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	nonsense	c.3493	p.E1165*	0.658	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	209	0	0	105	22	17.32	-	-	-	A	92761792	C	A	92761792	4	1	275	1	0	0	0	0	0	1	0	0	13913	922	32	2	1265	2	SAMD9L	7	92761792	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30627	92761792	66376871	2284	27971										
SAMD9L	0	genome.wustl.edu	37	chr7	92764432	92764432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccacaaaccttggctcccGaatacacttcttggcttcat	5	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92764432	92764432	G	A	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.853	p.R285W	0.999	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	130	0	0	56	11	16.42	-	-	-	A	92764432	G	A	92764432	3	1	275	1	0	0	0	0	1	0	0	0	13913	1057	37	1	3905	1	SAMD9L	7	92764432	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2640	92764432	66374231	2285	27972										
CCDC132	0	genome.wustl.edu	37	chr7	92869225	92869225	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgatcttggtgccatagAgagtctccgggtccctggaa	13	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92869225	92869225	A	C	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	missense	c.80	p.E27A	1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	339	0	0	185	67	26.48	-	-	-	C	92869225	A	C	92869225	3	2	275	1	0	0	0	0	1	0	0	0	2792	304	11	5	86	5	CCDC132	7	92869225	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	104793	92869225	66269438	2286	27973										
CCDC132	0	genome.wustl.edu	37	chr7	92978029	92978029	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattccctttagggtattCttggctgaacagtttgagtt	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	92978029	92978029	C	T	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	silent	c.2214	p.F738	1.000	pfam_DUF2451_C	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	207	0	0	155	30	16.22	-	-	-	T	92978029	C	T	92978029	2	4	275	1	0	0	0	0	0	0	0	1	2792	912	32	2		2	CCDC132	7	92978029	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	108804	92978029	66160634	2287	27974										
CALCR	0	genome.wustl.edu	37	chr7	93055814	93055814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcagcagcggctgcagcgcGagcagagcggttggaggggc	20	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	93055814	93055814	G	A	SNP	CALCR	ENST00000359558	human	ensembl	69_37n	-1	known	missense	c.1381	p.R461C	0.006	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	CALCR	HGNC	ENSG00000004948	56	0	0	37	16	29.63	-	-	-	A	93055814	G	A	93055814	3	1	275	1	0	0	0	0	1	0	0	0	2604	1058	37	1	149	1	CALCR	7	93055814	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77785	93055814	66082849	2288	27975										
COL1A2	0	genome.wustl.edu	37	chr7	94040216	94040216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagggtagtcctggttctCgtggtcttcctggagctgat	14	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	94040216	94040216	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.1213	p.R405C	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	334	0	0	239	43	15.25	-	-	-	T	94040216	C	T	94040216	3	4	275	1	0	0	0	0	1	0	0	0	3708	884	31	1	1299	1	COL1A2	7	94040216	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	984402	94040216	65098447	2289	27976										
CASD1	0	genome.wustl.edu	37	chr7	94146921	94146921	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggcagatttcttggagaGaaagtttggcaacctcacag	12	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	94146921	94146921	G	T	SNP	CASD1	ENST00000297273	human	ensembl	69_37n	1	known	missense	c.183	p.E61D	1.000	superfamily_Cyclin-like	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995	233	0	0	176	45	20.36	-	-	-	T	94146921	G	T	94146921	3	4	275	1	0	0	0	0	1	0	0	0	2689	933	33	2	189	2	CASD1	7	94146921	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106705	94146921	64991742	2290	27977										
PEG10	0	genome.wustl.edu	37	chr7	94294110	94294110	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcgggcccagttgtccacGaaactcacgacctgatagtt	9	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	94294110	94294110	G	A	SNP	PEG10	ENST00000465184	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.831	-	-	-	no_errors	PEG10	HGNC	ENSG00000242265	64	0	0	41	10	19.61	-	-	-	A	94294110	G	A	94294110	1	1	275	0	1	0	0	0	0	0	0	0	11792	1059	37	1		1	PEG10	7	94294110	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	147189	94294110	64844553	2291	27978										
PDK4	0	genome.wustl.edu	37	chr7	95216827	95216827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcaggggaacaccacctCctctgtctgaaatctaaaac	6	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	95216827	95216827	C	T	SNP	PDK4	ENST00000005178	human	ensembl	69_37n	-1	known	missense	c.884	p.G295E	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799	87	0	0	71	12	14.46	-	-	-	T	95216827	C	T	95216827	3	4	275	1	0	0	0	0	1	0	0	0	11751	855	30	2	363	2	PDK4	7	95216827	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	922717	95216827	63921836	2292	27979										
TAC1	0	genome.wustl.edu	37	chr7	97364151	97364151	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctaggacatggccagatCtctcacaaaagtaagttcaa	7	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	97364151	97364151	C	A	SNP	TAC1	ENST00000319273	human	ensembl	69_37n	1	known	silent	c.279	p.I93	0.929	prints_Protachykinin	smart_Tachykinin,prints_Protachykinin	-	no_errors	TAC1	HGNC	ENSG00000006128	125	0	0	41	13	24.07	-	-	-	A	97364151	C	A	97364151	2	1	275	1	0	0	0	0	0	0	0	1	15590	903	32	2		2	TAC1	7	97364151	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2147324	97364151	61774512	2293	27980										
SMURF1	0	genome.wustl.edu	37	chr7	98630674	98630674	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttaccaggtatgggccttCggaaggttgtctgtgttcgc	14	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	98630674	98630674	C	T	SNP	SMURF1	ENST00000361125	human	ensembl	69_37n	-1	known	silent	c.2160	p.P720	0.656	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF1	HGNC	ENSG00000198742	154	0	0	82	28	25.45	-	-	-	T	98630674	C	T	98630674	2	4	275	1	0	0	0	0	0	0	0	1	14908	871	31	1		1	SMURF1	7	98630674	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1266523	98630674	60507989	2294	27981										
ZNF789	0	genome.wustl.edu	37	chr7	99084142	99084142	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaagctaactccaaaacaGaaattttctgaagatttaga	5	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99084142	99084142	G	T	SNP	ZNF789	ENST00000331410	human	ensembl	69_37n	1	known	missense	c.309	p.Q103H	0.205	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556	76	0	0	56	21	27.27	-	-	-	T	99084142	G	T	99084142	3	4	275	1	0	0	0	0	1	0	0	0	18253	933	33	2	365	2	ZNF789	7	99084142	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	453468	99084142	60054521	2295	27982										
CYP3A43	0	genome.wustl.edu	37	chr7	99457527	99457527	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacacaactagcaccactCtccccttcattatgtatgaa	4	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99457527	99457527	C	A	SNP	CYP3A43	ENST00000222382	human	ensembl	69_37n	1	known	missense	c.940	p.L314I	0.543	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP3A43	HGNC	ENSG00000021461	265	0	0	187	31	14.22	-	-	-	A	99457527	C	A	99457527	3	1	275	1	0	0	0	0	1	0	0	0	4210	913	32	2	978	2	CYP3A43	7	99457527	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	373385	99457527	59681136	2296	27983										
TRIM4	0	genome.wustl.edu	37	chr7	99490037	99490037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagcactccaataaatcgCccagatgcccacatctgggg	9	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99490037	99490037	C	A	SNP	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	missense	c.1252	p.A418S	0.765	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	318	0	0	220	38	14.73	-	-	-	A	99490037	C	A	99490037	3	1	275	1	0	0	0	0	1	0	0	0	16610	739	26	4	254	4	TRIM4	7	99490037	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32510	99490037	59648626	2297	27984										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99631651	99631651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcatacctgattttgcatcGgagaattcacactcgagaaa	7	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99631651	99631651	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	missense	c.1523	p.R508Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	97	0	0	94	26	21.67	-	-	-	A	99631651	G	A	99631651	3	1	275	1	0	0	0	0	1	0	0	0	17782	1116	39	1	1541	1	ZKSCAN1	7	99631651	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	141614	99631651	59507012	2298	27985										
ZSCAN21	0	genome.wustl.edu	37	chr7	99661992	99661992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagccttatcagtgtaacGaatgtgggaagagcttcagt	12	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99661992	99661992	G	A	SNP	ZSCAN21	ENST00000292450	human	ensembl	69_37n	1	known	missense	c.1174	p.E392K	0.591	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	88	0	0	64	11	14.47	-	-	-	A	99661992	G	A	99661992	3	1	275	1	0	0	0	0	1	0	0	0	18325	1059	37	1	1184	1	ZSCAN21	7	99661992	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30341	99661992	59476671	2299	27986										
C7orf59	0	genome.wustl.edu	37	chr7	99753199	99753199	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaccttccctctgcccagCtttttatttcatccccaaaa	2	18	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99753199	99753199	C	A	SNP	C7orf59	ENST00000490633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.236	-	-	-	no_errors	C7orf59	HGNC	ENSG00000188186	85	0	0	57	9	13.64	-	-	-	A	99753199	C	A	99753199	1	1	275	0	1	0	0	0	0	0	0	0	2429	812	28	4		4	C7orf59	7	99753199	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	91207	99753199	59385464	2300	27987										
GAL3ST4	0	genome.wustl.edu	37	chr7	99764693	99764693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggtccccagagccgcagcGtcctggcaggagagagaggg	18	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99764693	99764693	G	A	SNP	GAL3ST4	ENST00000360039	human	ensembl	69_37n	-1	known	missense	c.26	p.T9M	0.946	NULL	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093	295	0	0	219	44	16.73	-	-	-	A	99764693	G	A	99764693	3	1	275	1	0	0	0	0	1	0	0	0	6250	1145	40	1	1446	1	GAL3ST4	7	99764693	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11494	99764693	59373970	2301	27988										
STAG3	0	genome.wustl.edu	37	chr7	99780365	99780365	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggcaaaacatccaaagaAagggtcccgagtggtacatc	12	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99780365	99780365	A	G	SNP	STAG3	ENST00000317296	human	ensembl	69_37n	1	known	missense	c.239	p.K80R	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923	234	0	0	158	69	30.4	-	-	-	G	99780365	A	G	99780365	3	3	275	1	0	0	0	0	1	0	0	0	15335	14	1	5	249	5	STAG3	7	99780365	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	15672	99780365	59358298	2302	27989										
ZCWPW1	0	genome.wustl.edu	37	chr7	99999580	99999580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggtgcaggaggagctgtgGatttcctgcctagagatctc	15	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	99999580	99999580	G	A	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.1556	p.S519F	0.000	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	453	0	0	248	34	12.01	-	-	-	A	99999580	G	A	99999580	3	1	275	1	0	0	0	0	1	0	0	0	17693	1174	41	2	398	2	ZCWPW1	7	99999580	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	219215	99999580	59139083	2303	27990										
ZCWPW1	0	genome.wustl.edu	37	chr7	100004384	100004384	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgactgggatccatgcacgaGaaactgtttctccaaaaaac	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100004384	100004384	G	T	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.1103	p.S368Y	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	469	0	0	232	101	30.33	-	-	-	T	100004384	G	T	100004384	3	4	275	1	0	0	0	0	1	0	0	0	17693	942	33	2	871	2	ZCWPW1	7	100004384	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4804	100004384	59134279	2304	27991										
ZCWPW1	0	genome.wustl.edu	37	chr7	100017480	100017480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttgtgcaggtggggcaaAgattctctttggtccctttc	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100017480	100017480	A	C	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.55	p.F19V	0.827	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	174	0	0	148	70	32.11	-	-	-	C	100017480	A	C	100017480	3	2	275	1	0	0	0	0	1	0	0	0	17693	72	3	5	1951	5	ZCWPW1	7	100017480	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	13096	100017480	59121183	2305	27992										
ZAN	0	genome.wustl.edu	37	chr7	100365543	100365543	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacctcgtcctcctctacacGaactttgggctccaagttcg	7	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100365543	100365543	G	A	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.4950	p.T1650	0.451	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	98	0	0	81	33	28.95	-	-	-	A	100365543	G	A	100365543	2	1	275	1	0	0	0	0	0	0	0	1	17610	1045	37	1		1	ZAN	7	100365543	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	348063	100365543	58773120	2306	27993										
MUC17	0	genome.wustl.edu	37	chr7	100678809	100678809	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcacacctgtgaccacttCtactgaagcctgttcatctc	6	15	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100678809	100678809	C	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.4112	p.S1371Y	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	123	1	0.81	99	11	10	-	-	-	A	100678809	C	A	100678809	3	1	275	1	0	0	0	0	1	0	0	0	10046	913	32	2	4122	2	MUC17	7	100678809	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	313266	100678809	58459854	2307	27994										
MUC17	0	genome.wustl.edu	37	chr7	100681461	100681461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacacctgtgaccacttctaCtgaagccacttcatctccta	4	16	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100681461	100681461	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6764	p.T2255I	0.014	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	156	0	0	84	26	23.64	-	-	-	T	100681461	C	T	100681461	3	4	275	1	0	0	0	0	1	0	0	0	10046	565	20	4	6774	4	MUC17	7	100681461	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2652	100681461	58457202	2308	27995										
MUC17	0	genome.wustl.edu	37	chr7	100687041	100687041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccaccaccgctgtccccaCgaatactacaattaagagca	6	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	100687041	100687041	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.12344	p.T4115M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	186	0	0	234	33	12.36	-	-	-	T	100687041	C	T	100687041	3	4	275	1	0	0	0	0	1	0	0	0	10046	536	19	1	12354	1	MUC17	7	100687041	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5580	100687041	58451622	2309	27996										
LRWD1	0	genome.wustl.edu	37	chr7	102108194	102108194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatctctgaggagctggtggCcgccagtaggacccaggtgc	16	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	102108194	102108194	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	69_37n	1	known	missense	c.602	p.A201V	1.000	NULL	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036	56	0	0	33	7	17.07	-	-	-	T	102108194	C	T	102108194	3	4	275	1	0	0	0	0	1	0	0	0	9113	739	26	4	620	4	LRWD1	7	102108194	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1421153	102108194	57030469	2310	27997										
SLC26A5	0	genome.wustl.edu	37	chr7	103051989	103051989	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatatcatctggtactaatcGaacagctacaccaccaatca	4	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	103051989	103051989	G	A	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	nonsense	c.448	p.R150*	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	408	1	0.24	237	96	28.74	-	-	-	A	103051989	G	A	103051989	4	1	275	1	0	0	0	0	0	1	0	0	14609	1066	37	1	1887	1	SLC26A5	7	103051989	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	943795	103051989	56086674	2311	27998										
RELN	0	genome.wustl.edu	37	chr7	103341439	103341439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggtctgaataactaaagcGacatgaacctgaccctgtaa	10	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	103341439	103341439	G	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.820	p.R274C	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	452	0	0	174	53	23.14	-	-	-	A	103341439	G	A	103341439	3	1	275	1	0	0	0	0	1	0	0	0	13303	1058	37	1	9790	1	RELN	7	103341439	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	289450	103341439	55797224	2312	27999										
SRPK2	0	genome.wustl.edu	37	chr7	104787034	104787034	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatcatccacacacatcaaGatattttccggctttatgtc	5	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	104787034	104787034	G	T	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	silent	c.693	p.I231	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	299	1	0.33	213	42	16.41	-	-	-	T	104787034	G	T	104787034	2	4	275	1	0	0	0	0	0	0	0	1	15251	932	33	2		2	SRPK2	7	104787034	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1445595	104787034	54351629	2313	28000										
PUS7	0	genome.wustl.edu	37	chr7	105112623	105112623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccatgacttctgtccagGaattttgtagtatagctcta	7	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	105112623	105112623	G	A	SNP	PUS7	ENST00000356362	human	ensembl	69_37n	-1	known	missense	c.1193	p.S398F	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127	76	0	0	54	14	20.59	-	-	-	A	105112623	G	A	105112623	3	1	275	1	0	0	0	0	1	0	0	0	12916	1174	41	2	820	2	PUS7	7	105112623	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	325589	105112623	54026040	2314	28001										
ATXN7L1	0	genome.wustl.edu	37	chr7	105260694	105260694	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaccatggagtttagtgcGaatcgaaaacgatcccatct	8	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	105260694	105260694	G	A	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	silent	c.1470	p.F490	0.954	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	176	0	0	185	26	12.32	-	-	-	A	105260694	G	A	105260694	2	1	275	1	0	0	0	0	0	0	0	1	1220	1049	37	1		1	ATXN7L1	7	105260694	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	148071	105260694	53877969	2315	28002										
PIK3CG	0	genome.wustl.edu	37	chr7	106526632	106526632	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgggaattacaaaagtttCctgggcattaataaagagag	10	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	106526632	106526632	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	silent	c.2925	p.F975	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	274	0	0	261	35	11.78	-	-	-	T	106526632	C	T	106526632	2	4	275	1	0	0	0	0	0	0	0	1	11990	854	30	2		2	PIK3CG	7	106526632	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1265938	106526632	52612031	2316	28003										
PRKAR2B	0	genome.wustl.edu	37	chr7	106786832	106786832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataatcgtgggagtttcggcGaactggccttaatgtacaat	11	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	106786832	106786832	G	A	SNP	PRKAR2B	ENST00000265717	human	ensembl	69_37n	1	known	missense	c.667	p.E223K	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249	346	1	0.29	210	64	23.36	-	-	-	A	106786832	G	A	106786832	3	1	275	1	0	0	0	0	1	0	0	0	12587	1059	37	1	689	1	PRKAR2B	7	106786832	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	260200	106786832	52351831	2317	28004										
COG5	0	genome.wustl.edu	37	chr7	106888898	106888898	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctatagcatctcccacaGaagtgagtaagggttgcaca	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	106888898	106888898	G	T	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.1889	p.S630Y	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	247	0	0	163	58	26.24	-	-	-	T	106888898	G	T	106888898	3	4	275	1	0	0	0	0	1	0	0	0	3691	942	33	2	721	2	COG5	7	106888898	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	102066	106888898	52249765	2318	28005										
GPR22	0	genome.wustl.edu	37	chr7	107115432	107115432	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacgacgagaaagacaaaaGagagtcttcaggatgtcttt	11	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107115432	107115432	G	A	SNP	GPR22	ENST00000304402	human	ensembl	69_37n	1	known	silent	c.927	p.K309	0.965	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR22	HGNC	ENSG00000172209	348	0	0	187	25	11.74	-	-	-	A	107115432	G	A	107115432	2	1	275	1	0	0	0	0	0	0	0	1	6732	933	33	2		2	GPR22	7	107115432	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	226534	107115432	52023231	2319	28006										
SLC26A4	0	genome.wustl.edu	37	chr7	107336426	107336426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcattctggggctggatCtcggtttactagctggcctt	11	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107336426	107336426	C	A	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.1486	p.L496I	0.994	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	573	0	0	386	175	31.19	-	-	-	A	107336426	C	A	107336426	3	1	275	1	0	0	0	0	1	0	0	0	14608	913	32	2	1532	2	SLC26A4	7	107336426	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	220994	107336426	51802237	2320	28007										
SLC26A3	0	genome.wustl.edu	37	chr7	107415298	107415298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttgcgcttgcgtagaattCgaagtggactaaagccaacc	11	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107415298	107415298	C	T	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	missense	c.1697	p.R566Q	1.000	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	531	0	0	369	64	14.78	-	-	-	T	107415298	C	T	107415298	3	4	275	1	0	0	0	0	1	0	0	0	14607	884	31	1	621	1	SLC26A3	7	107415298	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	78872	107415298	51723365	2321	28008										
LAMB1	0	genome.wustl.edu	37	chr7	107593977	107593977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataaatgtgcatcttacttCgacagtcctgctggagggca	10	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107593977	107593977	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.3077	p.R1026Q	0.991	smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	184	0	0	133	34	20.36	-	-	-	T	107593977	C	T	107593977	3	4	275	1	0	0	0	0	1	0	0	0	8664	884	31	1	2335	1	LAMB1	7	107593977	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178679	107593977	51544686	2322	28009										
LAMB1	0	genome.wustl.edu	37	chr7	107594132	107594132	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgttgtgacactggcaaggCtgacacgaccccccaacttc	9	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107594132	107594132	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	silent	c.2922	p.Q974	1.000	pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	150	0	0	77	16	17.2	-	-	-	T	107594132	C	T	107594132	2	4	275	1	0	0	0	0	0	0	0	1	8664	796	28	4		4	LAMB1	7	107594132	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155	107594132	51544531	2323	28010										
NRCAM	0	genome.wustl.edu	37	chr7	107790514	107790514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatagtcaactaggctgtcGtcactatcttcttttttcac	5	12	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107790514	107790514	G	A	SNP	NRCAM	ENST00000445634	human	ensembl	69_37n	-1	novel	missense	c.452	p.T151M	0.997	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRCAM	HGNC	ENSG00000091129	550	0	0	372	141	27.49	-	-	-	A	107790514	G	A	107790514	3	1	275	1	0	0	0	0	1	0	0	0	10717	1136	40	1	162	1	NRCAM	7	107790514	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196382	107790514	51348149	2324	28011										
NRCAM	0	genome.wustl.edu	37	chr7	107807429	107807429	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcccccacagcaccaactcGaactttgtatgctgttcctg	7	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	107807429	107807429	G	A	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	nonsense	c.3403	p.R1135*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	273	0	0	135	43	24.16	-	-	-	A	107807429	G	A	107807429	4	1	275	1	0	0	0	0	0	1	0	0	10717	1066	37	1	557	1	NRCAM	7	107807429	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16915	107807429	51331234	2325	28012										
PNPLA8	0	genome.wustl.edu	37	chr7	108142960	108142960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccaccatcaattgagaGaattcggattcctctccctt	5	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	108142960	108142960	G	T	SNP	PNPLA8	ENST00000257694	human	ensembl	69_37n	-1	known	missense	c.1333	p.L445I	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241	201	0	0	130	45	25.71	-	-	-	T	108142960	G	T	108142960	3	4	275	1	0	0	0	0	1	0	0	0	12245	942	33	2	1043	2	PNPLA8	7	108142960	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	335531	108142960	50995703	2326	28013										
DNAJB9	0	genome.wustl.edu	37	chr7	108213486	108213486	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttgatgacttatttaaaGactttggcttttttggtcaa	7	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	108213486	108213486	G	T	SNP	DNAJB9	ENST00000249356	human	ensembl	69_37n	1	known	missense	c.361	p.D121Y	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB9	HGNC	ENSG00000128590	153	0	0	98	15	13.27	-	-	-	T	108213486	G	T	108213486	3	4	275	1	0	0	0	0	1	0	0	0	4662	942	33	2	367	2	DNAJB9	7	108213486	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70526	108213486	50925177	2327	28014										
LRRN3	0	genome.wustl.edu	37	chr7	110763893	110763893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtaccatggtaccattgaGtctctgccaaacctcaagga	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	110763893	110763893	G	T	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	missense	c.1065	p.E355D	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	145	0	0	76	15	16.48	-	-	-	T	110763893	G	T	110763893	3	4	275	1	0	0	0	0	1	0	0	0	9102	1020	36	4	1067	4	LRRN3	7	110763893	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2550407	110763893	48374770	2328	28015										
DOCK4	0	genome.wustl.edu	37	chr7	111508173	111508173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcaagggaaaacagccttCgagattgaactatatactta	9	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	111508173	111508173	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.2147	p.R716Q	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	211	0	0	165	24	12.7	-	-	-	T	111508173	C	T	111508173	3	4	275	1	0	0	0	0	1	0	0	0	4724	884	31	1	3877	1	DOCK4	7	111508173	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	744280	111508173	47630490	2329	28016										
IFRD1	0	genome.wustl.edu	37	chr7	112096972	112096972	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgggtgttaaatagtgcGaagacaaggcaagcagctct	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	112096972	112096972	G	A	SNP	IFRD1	ENST00000005558	human	ensembl	69_37n	1	known	silent	c.288	p.A96	0.360	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652	216	0	0	90	34	27.42	-	-	-	A	112096972	G	A	112096972	2	1	275	1	0	0	0	0	0	0	0	1	7607	1045	37	1		1	IFRD1	7	112096972	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	588799	112096972	47041691	2330	28017										
IFRD1	0	genome.wustl.edu	37	chr7	112115563	112115563	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataagagagcagatgttggaGaattcttctagattttcaga	10	4	3	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	112115563	112115563	G	A	SNP	IFRD1	ENST00000005558	human	ensembl	69_37n	1	known	missense	c.1345	p.E449K	1.000	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652	302	0	0	187	31	14.22	-	-	-	A	112115563	G	A	112115563	3	1	275	1	0	0	0	0	1	0	0	0	7607	943	33	2	1391	2	IFRD1	7	112115563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18591	112115563	47023100	2331	28018										
PPP1R3A	0	genome.wustl.edu	37	chr7	113519370	113519370	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctggggttaacacagcttCttcccaacttaaatttgtcc	6	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	113519370	113519370	C	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	nonsense	c.1777	p.E593*	0.003	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	258	0	0	120	50	29.41	-	-	-	A	113519370	C	A	113519370	4	1	275	1	0	0	0	0	0	1	0	0	12448	922	32	2	1595	2	PPP1R3A	7	113519370	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1403807	113519370	45619293	2332	28019										
FOXP2	0	genome.wustl.edu	37	chr7	114304455	114304455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcacattgacagcaatgGaaacagtagtccgggctgct	12	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	114304455	114304455	G	T	SNP	FOXP2	ENST00000408937	human	ensembl	69_37n	1	known	missense	c.2042	p.G681V	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573	132	1	0.75	89	13	12.75	-	-	-	T	114304455	G	T	114304455	3	4	275	1	0	0	0	0	1	0	0	0	6075	1174	41	2	2192	2	FOXP2	7	114304455	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	785085	114304455	44834208	2333	28020										
TFEC	0	genome.wustl.edu	37	chr7	115580655	115580655	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctacttctcctactgctttCtttggaaactgcaggggaag	10	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	115580655	115580655	C	A	SNP	TFEC	ENST00000265440	human	ensembl	69_37n	-1	known	nonsense	c.994	p.E332*	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFEC	HGNC	ENSG00000105967	78	0	0	59	9	13.24	-	-	-	A	115580655	C	A	115580655	4	1	275	1	0	0	0	0	0	1	0	0	15897	922	32	2	53	2	TFEC	7	115580655	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1276200	115580655	43558008	2334	28021										
MET	0	genome.wustl.edu	37	chr7	116418932	116418932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcctgggaatctgcctgcGaagtgaagggtctccgctgg	15	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	116418932	116418932	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.3497	p.R1166Q	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	300	0	0	202	30	12.77	-	-	-	A	116418932	G	A	116418932	3	1	275	1	0	0	0	0	1	0	0	0	9556	1058	37	1	3559	1	MET	7	116418932	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	838277	116418932	42719731	2335	28022										
CAPZA2	0	genome.wustl.edu	37	chr7	116544384	116544384	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcatggagaacttcagtaGaaactgctctgagagcttac	9	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	116544384	116544384	G	T	SNP	CAPZA2	ENST00000361183	human	ensembl	69_37n	1	known	nonsense	c.373	p.E125*	1.000	pfam_WASH_F-actin_cap_alpha	pfam_WASH_F-actin_cap_alpha,prints_WASH_F-actin_cap_alpha	-	no_errors	CAPZA2	HGNC	ENSG00000198898	276	0	0	208	31	12.92	-	-	-	T	116544384	G	T	116544384	4	4	275	1	0	0	0	0	0	1	0	0	2666	943	33	2	391	2	CAPZA2	7	116544384	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	125452	116544384	42594279	2336	28023										
CAPZA2	0	genome.wustl.edu	37	chr7	116546394	116546394	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagttccaagcaaaaaatttTtggtaagttaaaattttgga	7	4	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	116546394	116546394	T	G	SNP	CAPZA2	ENST00000361183	human	ensembl	69_37n	1	known	missense	c.504	p.F168L	0.998	pfam_WASH_F-actin_cap_alpha,prints_WASH_F-actin_cap_alpha	pfam_WASH_F-actin_cap_alpha,prints_WASH_F-actin_cap_alpha	-	no_errors	CAPZA2	HGNC	ENSG00000198898	384	0	0	233	91	28.09	-	-	-	G	116546394	T	G	116546394	3	3	275	1	0	0	0	0	1	0	0	0	2666	1838	64	5	526	5	CAPZA2	7	116546394	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2010	116546394	42592269	2337	28024										
CFTR	0	genome.wustl.edu	37	chr7	117232697	117232697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaataagtgaagaaattaacGaagaagacttaaaggtaggt	10	2	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	117232697	117232697	G	A	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.2476	p.E826K	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	51	0	0	31	10	23.81	-	-	-	A	117232697	G	A	117232697	3	1	275	1	0	0	0	0	1	0	0	0	3323	1059	37	1	2530	1	CFTR	7	117232697	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	686303	117232697	41905966	2338	28025										
CFTR	0	genome.wustl.edu	37	chr7	117254759	117254759	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaactccagcatagatgtgGatagcttggtaagtcttatc	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	117254759	117254759	G	A	SNP	CFTR	ENST00000468795	human	ensembl	69_37n	1	putative	nonsense	c.285	p.W95*	1.000	superfamily_ABC_transptrTM_dom_typ1,prints_CysFib_conduc_TM,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,prints_CysFib_conduc_TM,pfscan_ABC_transporter_type1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CFTR	HGNC	ENSG00000001626	386	0	0	191	25	11.57	-	-	-	A	117254759	G	A	117254759	4	1	275	1	0	0	0	0	0	1	0	0	3323	1174	41	2	3542	2	CFTR	7	117254759	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22062	117254759	41883904	2339	28026										
CFTR	0	genome.wustl.edu	37	chr7	117282581	117282581	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgaaggagaaatccagatCgatggtgtgtcttgggattc	13	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	117282581	117282581	C	T	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	silent	c.3807	p.I1269	0.989	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	206	0	0	111	28	20.14	-	-	-	T	117282581	C	T	117282581	2	4	275	1	0	0	0	0	0	0	0	1	3323	874	31	1		1	CFTR	7	117282581	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27822	117282581	41856082	2340	28027										
CTTNBP2	0	genome.wustl.edu	37	chr7	117431991	117431991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgcataggtggagcttgcGagttctgaggagctatgcct	15	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	117431991	117431991	G	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.1259	p.S420L	0.001	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	596	0	0	366	139	27.47	-	-	-	A	117431991	G	A	117431991	3	1	275	1	0	0	0	0	1	0	0	0	4077	1059	37	1	3812	1	CTTNBP2	7	117431991	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	149410	117431991	41706672	2341	28028										
KCND2	0	genome.wustl.edu	37	chr7	119915482	119915482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagtgtcatgagtatcatcGacgtggtggccatcctgcct	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	119915482	119915482	G	A	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.796	p.D266N	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	125	0	0	55	10	15.38	-	-	-	A	119915482	G	A	119915482	3	1	275	1	0	0	0	0	1	0	0	0	8073	1058	37	1	798	1	KCND2	7	119915482	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2483491	119915482	39223181	2342	28029										
PTPRZ1	0	genome.wustl.edu	37	chr7	121651597	121651597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttcagtagtgaattgtttCgccatctgcatacagtttct	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	121651597	121651597	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.2497	p.R833C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	167	0	0	76	33	30	-	-	-	T	121651597	C	T	121651597	3	4	275	1	0	0	0	0	1	0	0	0	12897	884	31	1	2543	1	PTPRZ1	7	121651597	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1736115	121651597	37487066	2343	28030										
PTPRZ1	0	genome.wustl.edu	37	chr7	121691555	121691555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcaacagggaaaagaatcGaacttcttctatcatccctg	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	121691555	121691555	G	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.6158	p.R2053Q	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	373	0	0	108	132	54.77	-	-	-	A	121691555	G	A	121691555	3	1	275	1	0	0	0	0	1	0	0	0	12897	1058	37	1	6252	1	PTPRZ1	7	121691555	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39958	121691555	37447108	2344	28031										
CADPS2	0	genome.wustl.edu	37	chr7	122255307	122255307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattgtacagtaaacaattCgattgggagcaactgacttc	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	122255307	122255307	C	T	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.1151	p.R384Q	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	398	0	0	231	35	13.16	-	-	-	T	122255307	C	T	122255307	3	4	275	1	0	0	0	0	1	0	0	0	2596	884	31	1	2883	1	CADPS2	7	122255307	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	563752	122255307	36883356	2345	28032										
TAS2R16	0	genome.wustl.edu	37	chr7	122635522	122635522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcccactgtagacagaagCgagagatgcccaggctgatg	13	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	122635522	122635522	C	T	SNP	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	missense	c.167	p.R56H	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	136	0	0	73	23	23.96	-	-	-	T	122635522	C	T	122635522	3	4	275	1	0	0	0	0	1	0	0	0	15661	768	27	1	712	1	TAS2R16	7	122635522	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	380215	122635522	36503141	2346	28033										
SLC13A1	0	genome.wustl.edu	37	chr7	122759256	122759256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctggtaatgaacccagaGgagataatttatttcctatc	8	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	122759256	122759256	G	T	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.1391	p.P464H	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	333	0	0	224	34	13.18	-	-	-	T	122759256	G	T	122759256	3	4	275	1	0	0	0	0	1	0	0	0	14480	1000	35	4	408	4	SLC13A1	7	122759256	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	123734	122759256	36379407	2347	28034										
WASL	0	genome.wustl.edu	37	chr7	123336674	123336674	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatctgccttggttaatctCttctttttagcttttccctt	4	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	123336674	123336674	C	A	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	missense	c.588	p.K196N	1.000	NULL	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	271	0	0	219	28	11.34	-	-	-	A	123336674	C	A	123336674	3	1	275	1	0	0	0	0	1	0	0	0	17353	912	32	2	953	2	WASL	7	123336674	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	577418	123336674	35801989	2348	28035										
SPAM1	0	genome.wustl.edu	37	chr7	123593863	123593863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctttcataggaagcccccGaataaacgccaccgggcaag	9	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	123593863	123593863	G	A	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	missense	c.239	p.R80Q	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	100	0	0	77	10	11.36	-	-	-	A	123593863	G	A	123593863	3	1	275	1	0	0	0	0	1	0	0	0	15077	1058	37	1	241	1	SPAM1	7	123593863	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	257189	123593863	35544800	2349	28036										
ZNF800	0	genome.wustl.edu	37	chr7	127014590	127014590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggattggtttggattctttCgtgtttcaatgtactttttt	9	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	127014590	127014590	C	T	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	missense	c.800	p.R267Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	831	2	0.24	351	123	25.95	-	-	-	T	127014590	C	T	127014590	3	4	275	1	0	0	0	0	1	0	0	0	18262	884	31	1	1202	1	ZNF800	7	127014590	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3420727	127014590	32124073	2350	28037										
METTL2B	0	genome.wustl.edu	37	chr7	128141829	128141829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acactagaggaactggacacGcttttcaccactgctggact	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	128141829	128141829	G	A	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	silent	c.996	p.T332	0.014	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	199	0	0	187	26	12.21	-	-	-	A	128141829	G	A	128141829	2	1	275	1	0	0	0	0	0	0	0	1	9571	1074	38	1		1	METTL2B	7	128141829	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1127239	128141829	30996834	2351	28038										
OPN1SW	0	genome.wustl.edu	37	chr7	128415814	128415814	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagagatatttttgaacaGataaaactcttcctccgaca	6	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	128415814	128415814	G	T	SNP	OPN1SW	ENST00000249389	human	ensembl	69_37n	-1	known	missense	c.31	p.L11M	0.990	prints_Opsin_blue	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_blue,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617	87	0	0	86	15	14.85	-	-	-	T	128415814	G	T	128415814	3	4	275	1	0	0	0	0	1	0	0	0	10953	933	33	2	1035	2	OPN1SW	7	128415814	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	273985	128415814	30722849	2352	28039										
COPG2	0	genome.wustl.edu	37	chr7	130148493	130148493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatggtgcagctaaaggaGcctgcaactggaggagaagg	15	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	130148493	130148493	G	A	SNP	COPG2	ENST00000425248	human	ensembl	69_37n	-1	known	missense	c.8	p.A3V	0.996	pfam_Coatomer_gsu_app,superfamily_Coatomer/clathrin_app_Ig-like	pfam_Coatomer_gsu_app,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COPG2	HGNC	ENSG00000158623	59	0	0	83	19	18.45	-	-	-	A	130148493	G	A	130148493	3	1	275	1	0	0	0	0	1	0	0	0	3762	958	34	4	474	4	COPG2	7	130148493	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1732679	130148493	28990170	2353	28040										
MKLN1	0	genome.wustl.edu	37	chr7	131071996	131071996	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttggtggaatgaatgaaGaaaatatgacagagctgttg	12	3	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	131071996	131071996	G	T	SNP	MKLN1	ENST00000352689	human	ensembl	69_37n	1	known	nonsense	c.286	p.E96*	1.000	pfam_Muskelin_N,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585	276	0	0	156	54	25.71	-	-	-	T	131071996	G	T	131071996	4	4	275	1	0	0	0	0	0	1	0	0	9674	943	33	2	329	2	MKLN1	7	131071996	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	923503	131071996	28066667	2354	28041										
MKLN1	0	genome.wustl.edu	37	chr7	131084022	131084022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgtgaacaggaagctattcGcctttgcctaaaacacttca	7	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	131084022	131084022	G	A	SNP	MKLN1	ENST00000352689	human	ensembl	69_37n	1	known	missense	c.533	p.R178H	1.000	pfam_Muskelin_N,smart_LisH_dimerisation,pfscan_LisH_dimerisation	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585	285	0	0	127	43	25.29	-	-	-	A	131084022	G	A	131084022	3	1	275	1	0	0	0	0	1	0	0	0	9674	1087	38	1	588	1	MKLN1	7	131084022	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12026	131084022	28054641	2355	28042										
PLXNA4	0	genome.wustl.edu	37	chr7	131887455	131887455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggcaccagacagctccaGccactggctctcctgggcag	11	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	131887455	131887455	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.2536	p.L846	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	46	0	0	37	5	11.9	-	-	-	A	131887455	G	A	131887455	2	1	275	1	0	0	0	0	0	0	0	1	12196	962	34	4		4	PLXNA4	7	131887455	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	803433	131887455	27251208	2356	28043										
PLXNA4	0	genome.wustl.edu	37	chr7	132174080	132174080	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgccacttttggtgcccaCaaaggccagagagtggttct	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	132174080	132174080	C	G	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.1342	p.V448L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	87	0	0	56	17	23.29	-	-	-	G	132174080	C	G	132174080	3	3	275	1	0	0	0	0	1	0	0	0	12196	478	17	4	4776	4	PLXNA4	7	132174080	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	286625	132174080	26964583	2357	28044										
LRGUK	0	genome.wustl.edu	37	chr7	133827863	133827863	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcctagaacttaatgcttCtcaaaataatttgactacgt	4	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	133827863	133827863	C	A	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	missense	c.536	p.S179Y	1.000	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	342	0	0	312	40	11.36	-	-	-	A	133827863	C	A	133827863	3	1	275	1	0	0	0	0	1	0	0	0	9009	913	32	2	550	2	LRGUK	7	133827863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1653783	133827863	25310800	2358	28045										
LRGUK	0	genome.wustl.edu	37	chr7	133842802	133842802	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtataggcaatgagatagaaGaaatcagtggactagagatg	13	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	133842802	133842802	G	T	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	nonsense	c.685	p.E229*	0.702	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	248	0	0	172	55	24.23	-	-	-	T	133842802	G	T	133842802	4	4	275	1	0	0	0	0	0	1	0	0	9009	943	33	2	707	2	LRGUK	7	133842802	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14939	133842802	25295861	2359	28046										
SLC35B4	0	genome.wustl.edu	37	chr7	133986550	133986550	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgcctggaatccatcattCtcactcaagctggactggga	9	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	133986550	133986550	C	A	SNP	SLC35B4	ENST00000378509	human	ensembl	69_37n	-1	known	missense	c.450	p.E150D	0.995	pfam_UAA	pfam_UAA,pfam_DUF250	-	no_errors	SLC35B4	HGNC	ENSG00000205060	113	0	0	65	36	35.64	-	-	-	A	133986550	C	A	133986550	3	1	275	1	0	0	0	0	1	0	0	0	14667	912	32	2	565	2	SLC35B4	7	133986550	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	143748	133986550	25152113	2360	28047										
CALD1	0	genome.wustl.edu	37	chr7	134618525	134618525	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggataaaggaggaagaGaaaagggcagcagaggagag	18	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	134618525	134618525	G	T	SNP	CALD1	ENST00000361675	human	ensembl	69_37n	1	novel	missense	c.1005	p.E335D	0.016	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	3702	1	0.03	2727	405	12.93	-	-	-	T	134618525	G	T	134618525	3	4	275	1	0	0	0	0	1	0	0	0	2606	933	33	2	1072	2	CALD1	7	134618525	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	631975	134618525	24520138	2361	28048										
NUP205	0	genome.wustl.edu	37	chr7	135261103	135261103	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggaaagcgatgcattgcGaattccttgaaagccttgat	11	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	135261103	135261103	G	A	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	silent	c.429	p.A143	0.624	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	443	0	0	251	81	24.4	-	-	-	A	135261103	G	A	135261103	2	1	275	1	0	0	0	0	0	0	0	1	10832	1045	37	1		1	NUP205	7	135261103	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	642578	135261103	23877560	2362	28049										
SVOPL	0	genome.wustl.edu	37	chr7	138347862	138347862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggaggccaaagaggataCtgaaaaccatgtagccaaaa	10	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	138347862	138347862	C	T	SNP	SVOPL	ENST00000419765	human	ensembl	69_37n	-1	known	missense	c.302	p.S101N	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SVOPL	HGNC	ENSG00000157703	266	0	0	128	18	12.33	-	-	-	T	138347862	C	T	138347862	3	4	275	1	0	0	0	0	1	0	0	0	15515	565	20	4	1224	4	SVOPL	7	138347862	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3086759	138347862	20790801	2363	28050										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138433922	138433922	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatctttacctgggtttatCtcccggtagctgccgacacc	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	138433922	138433922	C	A	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	missense	c.1170	p.E390D	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	213	0	0	153	20	11.56	-	-	-	A	138433922	C	A	138433922	3	1	275	1	0	0	0	0	1	0	0	0	1174	912	32	2	1396	2	ATP6V0A4	7	138433922	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86060	138433922	20704741	2364	28051										
UBN2	0	genome.wustl.edu	37	chr7	138946473	138946473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacttcttgaaaaacgtatcGaagaccttcgtgtagtaagt	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	138946473	138946473	G	A	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.1381	p.E461K	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	51	0	0	51	11	17.74	-	-	-	A	138946473	G	A	138946473	3	1	275	1	0	0	0	0	1	0	0	0	16990	1059	37	1	1403	1	UBN2	7	138946473	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	512551	138946473	20192190	2365	28052										
HIPK2	0	genome.wustl.edu	37	chr7	139416484	139416484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggaggctcacagtgcttCgacgcattaggttgtgtggt	14	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	139416484	139416484	C	T	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.350	p.R117Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	543	0	0	429	57	11.68	-	-	-	T	139416484	C	T	139416484	3	4	275	1	0	0	0	0	1	0	0	0	7168	884	31	1	3302	1	HIPK2	7	139416484	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	470011	139416484	19722179	2366	28053										
AGK	0	genome.wustl.edu	37	chr7	141255292	141255292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgttctttaaaacgcttcGaaatcactggaagaaaacta	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141255292	141255292	G	A	SNP	AGK	ENST00000355413	human	ensembl	69_37n	1	known	missense	c.26	p.R9Q	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	221	2	0.89	156	19	10.86	-	-	-	A	141255292	G	A	141255292	3	1	275	1	0	0	0	0	1	0	0	0	383	1058	37	1	28	1	AGK	7	141255292	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1838808	141255292	17883371	2367	28054										
AGK	0	genome.wustl.edu	37	chr7	141336802	141336802	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatcaaagcagcccacttTttcagcactcttaaggtaaa	5	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141336802	141336802	T	G	SNP	AGK	ENST00000355413	human	ensembl	69_37n	1	known	missense	c.711	p.F237L	0.998	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	559	0	0	373	122	24.6	-	-	-	G	141336802	T	G	141336802	3	3	275	1	0	0	0	0	1	0	0	0	383	1838	64	5	749	5	AGK	7	141336802	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	81510	141336802	17801861	2368	28055										
SSBP1	0	genome.wustl.edu	37	chr7	141445301	141445301	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatttatatcaggtctcGaatttatttggaagggaaaa	8	3	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141445301	141445301	G	A	SNP	SSBP1	ENST00000265304	human	ensembl	69_37n	1	known	missense	c.320	p.R107Q	1.000	pfam_Primosome_PriB/ssb,superfamily_NA-bd_OB-fold-like,pfscan_Primosome_PriB/ssb,tigrfam_ssDNA-bd	pfam_Primosome_PriB/ssb,superfamily_NA-bd_OB-fold-like,pfscan_Primosome_PriB/ssb,tigrfam_ssDNA-bd	-	no_errors	SSBP1	HGNC	ENSG00000106028	360	1	0.28	246	38	13.38	-	-	-	A	141445301	G	A	141445301	3	1	275	1	0	0	0	0	1	0	0	0	15270	1058	37	1	338	1	SSBP1	7	141445301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	108499	141445301	17693362	2369	28056										
TAS2R5	0	genome.wustl.edu	37	chr7	141490680	141490680	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctgtatgcatttcagctCaattcaggaagttatttgcc	7	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141490680	141490680	C	A	SNP	TAS2R5	ENST00000247883	human	ensembl	69_37n	1	known	silent	c.519	p.L173	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R5	HGNC	ENSG00000127366	237	0	0	139	74	34.74	-	-	-	A	141490680	C	A	141490680	2	1	275	1	0	0	0	0	0	0	0	1	15675	813	29	2		2	TAS2R5	7	141490680	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45379	141490680	17647983	2370	28057										
MGAM	0	genome.wustl.edu	37	chr7	141724853	141724853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taattctctttctgcagaacGgaactaatttgtatggtgcg	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141724853	141724853	G	A	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.886	p.G296R	0.769	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	320	0	0	237	33	12.18	-	-	-	A	141724853	G	A	141724853	3	1	275	1	0	0	0	0	1	0	0	0	9612	1117	39	1	912	1	MGAM	7	141724853	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	234173	141724853	17413810	2371	28058										
MGAM	0	genome.wustl.edu	37	chr7	141738348	141738348	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggttctacgaggacaacaGcacttgggatgtgcaccaac	11	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	141738348	141738348	G	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.2249	p.S750I	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	156	0	0	76	10	11.63	-	-	-	T	141738348	G	T	141738348	3	4	275	1	0	0	0	0	1	0	0	0	9612	971	34	4	2319	4	MGAM	7	141738348	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13495	141738348	17400315	2372	28059										
OR6V1	0	genome.wustl.edu	37	chr7	142749734	142749734	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actggctgcatggtccagttCtacttccacttttccctggg	9	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	142749734	142749734	C	A	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	1	known	missense	c.297	p.F99L	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	371	0	0	268	45	14.38	-	-	-	A	142749734	C	A	142749734	3	1	275	1	0	0	0	0	1	0	0	0	11284	912	32	2	299	2	OR6V1	7	142749734	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1011386	142749734	16388929	2373	28060										
GSTK1	0	genome.wustl.edu	37	chr7	142962181	142962181	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgtggatgcgcgtctggtCaagggtgagtgtggggctct	19	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	142962181	142962181	C	A	SNP	GSTK1	ENST00000479303	human	ensembl	69_37n	1	known	nonsense	c.380	p.S127*	1.000	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	-	no_errors	GSTK1	HGNC	ENSG00000197448	946	0	0	456	124	21.34	-	-	-	A	142962181	C	A	142962181	4	1	275	1	0	0	0	0	0	1	0	0	6887	838	29	2	394	2	GSTK1	7	142962181	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	212447	142962181	16176482	2374	28061										
CLCN1	0	genome.wustl.edu	37	chr7	143018550	143018550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtcctcatcctcttcagcGccctcttctgccacctcatc	4	19	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	143018550	143018550	G	A	SNP	CLCN1	ENST00000343257	human	ensembl	69_37n	1	known	missense	c.526	p.A176T	0.998	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037	774	1	0.13	609	168	21.37	-	-	-	A	143018550	G	A	143018550	3	1	275	1	0	0	0	0	1	0	0	0	3492	1087	38	1	540	1	CLCN1	7	143018550	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	56369	143018550	16120113	2375	28062										
CLCN1	0	genome.wustl.edu	37	chr7	143043345	143043345	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaagcaccagagcctgcagGtgacgctcttccctcatgca	11	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	143043345	143043345	G	A	SNP	CLCN1	ENST00000343257	human	ensembl	69_37n	1	known	splice_site	c.2284+1	e18+1	1.000	-	-	-	no_errors	CLCN1	HGNC	ENSG00000188037	117	0	0	69	37	34.91	-	-	-	A	143043345	G	A	143043345	5	1	275	1	0	0	0	0	0	0	1	0	3492	1275	44	4	2355	4	CLCN1	7	143043345	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24795	143043345	16095318	2376	28063										
EPHA1	0	genome.wustl.edu	37	chr7	143091418	143091418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcttcaggggctgtccaacGgatagggatctttcctccct	12	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	143091418	143091418	G	T	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.2371	p.R791S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	194	0	0	100	36	26.47	-	-	-	T	143091418	G	T	143091418	3	4	275	1	0	0	0	0	1	0	0	0	5202	1116	39	3	575	3	EPHA1	7	143091418	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48073	143091418	16047245	2377	28064										
OR2A12	0	genome.wustl.edu	37	chr7	143792800	143792800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccaggtggtcctatttgcGggttctgcgttcatcttagt	11	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	143792800	143792800	G	A	SNP	OR2A12	ENST00000408949	human	ensembl	69_37n	1	known	silent	c.600	p.A200	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858	513	1	0.19	361	141	27.98	-	-	-	A	143792800	G	A	143792800	2	1	275	1	0	0	0	0	0	0	0	1	11048	1103	39	1		1	OR2A12	7	143792800	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	701382	143792800	15345863	2378	28065										
ARHGEF5	0	genome.wustl.edu	37	chr7	144060821	144060821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctttttgggaaaatcagaGgaagtaactggaaagcaaga	11	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	144060821	144060821	G	T	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.1059	p.E353D	0.017	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	518	0	0	257	81	23.96	-	-	-	T	144060821	G	T	144060821	3	4	275	1	0	0	0	0	1	0	0	0	911	991	35	4	1061	4	ARHGEF5	7	144060821	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	268021	144060821	15077842	2379	28066										
TPK1	0	genome.wustl.edu	37	chr7	144150592	144150592	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgagcaatgaactgttgaGaaatgagataaggcagaggc	14	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	144150592	144150592	G	T	SNP	TPK1	ENST00000547966	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPK1	HGNC	ENSG00000196511	152	0	0	125	17	11.97	-	-	-	T	144150592	G	T	144150592	1	4	275	0	1	0	0	0	0	0	0	0	16500	957	33	2		2	TPK1	7	144150592	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	89771	144150592	14988071	2380	28067										
CNTNAP2	0	genome.wustl.edu	37	chr7	146997332	146997332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgaagcatcagcagttcGaactaatagtccccttcaag	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	146997332	146997332	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.1448	p.R483Q	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	351	0	0	203	36	15.06	-	-	-	A	146997332	G	A	146997332	3	1	275	1	0	0	0	0	1	0	0	0	3677	1058	37	1	1482	1	CNTNAP2	7	146997332	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2846740	146997332	12141331	2381	28068										
PDIA4	0	genome.wustl.edu	37	chr7	148700920	148700920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtcctgctcagttttgtgGcatgttcttctataaacttg	9	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	148700920	148700920	G	A	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.1904	p.A635V	0.003	pirsf_Protein_diS-isomerase_A4,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	58	0	0	28	4	12.5	-	-	-	A	148700920	G	A	148700920	3	1	275	1	0	0	0	0	1	0	0	0	11743	1203	42	4	37	4	PDIA4	7	148700920	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1703588	148700920	10437743	2382	28069										
PDIA4	0	genome.wustl.edu	37	chr7	148701072	148701072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggacgtcgttggcagtggcGtccatcttggcgatgaccag	16	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	148701072	148701072	G	T	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.1752	p.D584E	0.934	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	119	0	0	60	9	13.04	-	-	-	T	148701072	G	T	148701072	3	4	275	1	0	0	0	0	1	0	0	0	11743	1136	40	3	189	3	PDIA4	7	148701072	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	152	148701072	10437591	2383	28070										
PDIA4	0	genome.wustl.edu	37	chr7	148712057	148712057	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacaacttcatcaaagttctCtttggtcaacacaagcgtga	6	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	148712057	148712057	C	A	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	nonsense	c.553	p.E185*	0.991	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	76	0	0	57	11	16.18	-	-	-	A	148712057	C	A	148712057	4	1	275	1	0	0	0	0	0	1	0	0	11743	922	32	2	1412	2	PDIA4	7	148712057	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10985	148712057	10426606	2384	28071										
SSPO	0	genome.wustl.edu	37	chr7	149500320	149500320	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatcccccaccagactgcGagctgggccgtgtgtatgtg	12	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	149500320	149500320	G	A	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	25	0	0	12	7	36.84	-	-	-	A	149500320	G	A	149500320	1	1	275	0	1	0	0	0	0	0	0	0	15280	1059	37	1		1	SSPO	7	149500320	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	788263	149500320	9638343	2385	28072										
GIMAP8	0	genome.wustl.edu	37	chr7	150164358	150164358	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctccttcgcaaggttgagtCtttggtgaatacgaacggag	13	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	150164358	150164358	C	A	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.572	p.S191Y	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	252	0	0	209	27	11.44	-	-	-	A	150164358	C	A	150164358	3	1	275	1	0	0	0	0	1	0	0	0	6437	913	32	2	574	2	GIMAP8	7	150164358	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	664038	150164358	8974305	2386	28073										
TMEM176B	0	genome.wustl.edu	37	chr7	150493481	150493481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagctgctcataaccaatCctggctgtggaaggcacagt	11	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	150493481	150493481	C	A	SNP	TMEM176B	ENST00000326442	human	ensembl	69_37n	-1	known	missense	c.177	p.R59S	0.005	superfamily_MFS_dom_general_subst_transpt	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM176B	HGNC	ENSG00000106565	106	0	0	75	16	17.58	-	-	-	A	150493481	C	A	150493481	3	1	275	1	0	0	0	0	1	0	0	0	16188	854	30	2	659	2	TMEM176B	7	150493481	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	329123	150493481	8645182	2387	28074										
KCNH2	0	genome.wustl.edu	37	chr7	150656771	150656771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggatgaacatgatgacagCcccatcctcgttcttcacgg	10	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	150656771	150656771	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	69_37n	-1	known	missense	c.361	p.A121T	0.988	pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,pfscan_PAS-assoc_C,tigrfam_PAS	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	89	0	0	61	12	16.44	-	-	-	T	150656771	C	T	150656771	3	4	275	1	0	0	0	0	1	0	0	0	8086	739	26	4	3551	4	KCNH2	7	150656771	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	163290	150656771	8481892	2388	28075										
ATG9B	0	genome.wustl.edu	37	chr7	150713794	150713794	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggggtcctgggcaattCgggaaatggaggcaaggagg	18	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	150713794	150713794	C	T	SNP	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.675	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	63	0	0	40	5	11.11	-	-	-	T	150713794	C	T	150713794	1	4	275	0	1	0	0	0	0	0	0	0	1107	893	31	1		1	ATG9B	7	150713794	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	57023	150713794	8424869	2389	28076										
PRKAG2	0	genome.wustl.edu	37	chr7	151265922	151265922	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaaggagtatacagcatcGaagaggctgtgggagaagtc	14	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	151265922	151265922	G	A	SNP	PRKAG2	ENST00000287878	human	ensembl	69_37n	-1	known	silent	c.1113	p.F371	1.000	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG2	HGNC	ENSG00000106617	160	0	0	64	16	20	-	-	-	A	151265922	G	A	151265922	2	1	275	1	0	0	0	0	0	0	0	1	12582	1049	37	1		1	PRKAG2	7	151265922	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	552128	151265922	7872741	2390	28077										
MLL3	0	genome.wustl.edu	37	chr7	151845580	151845580	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgataaatgttggtgcatcGaaatctgtggcatccactag	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	151845580	151845580	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.13603	p.R4535*	0.998	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	70	0	0	61	23	27.38	-	-	-	A	151845580	G	A	151845580	4	1	275	1	0	0	0	0	0	1	0	0	9693	1066	37	1	1335	1	MLL3	7	151845580	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	579658	151845580	7293083	2391	28078										
MLL3	0	genome.wustl.edu	37	chr7	151873885	151873885	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcactggggccagcagtttCtcgattggttcttttctcaa	10	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	151873885	151873885	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.8653	p.E2885K	0.114	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	106	0	0	124	25	16.78	-	-	-	T	151873885	C	T	151873885	3	4	275	1	0	0	0	0	1	0	0	0	9693	922	32	2	6170	2	MLL3	7	151873885	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28305	151873885	7264778	2392	28079										
DPP6	0	genome.wustl.edu	37	chr7	154237627	154237627	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcttacagatacagaattCatctacagagaacagaaagg	7	8	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	154237627	154237627	C	A	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.468	p.F156L	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	351	0	0	173	66	27.62	-	-	-	A	154237627	C	A	154237627	3	1	275	1	0	0	0	0	1	0	0	0	4765	825	29	2	598	2	DPP6	7	154237627	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2363742	154237627	4901036	2393	28080										
CNPY1	0	genome.wustl.edu	37	chr7	155301642	155301642	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatacaattttttaaattCttggtatattttgtctcctt	3	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	155301642	155301642	C	A	SNP	CNPY1	ENST00000321736	human	ensembl	69_37n	-1	putative	nonsense	c.91	p.E31*	0.999	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY1	HGNC	ENSG00000146910	83	0	0	51	6	10.53	-	-	-	A	155301642	C	A	155301642	4	1	275	1	0	0	0	0	0	1	0	0	3657	922	32	2	199	2	CNPY1	7	155301642	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1064015	155301642	3837021	2394	28081										
UBE3C	0	genome.wustl.edu	37	chr7	156956529	156956529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggcttctcttttacatcGtactcaggaagaaagaagaa	8	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	156956529	156956529	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	missense	c.92	p.R31H	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	514	0	0	454	70	13.36	-	-	-	A	156956529	G	A	156956529	3	1	275	1	0	0	0	0	1	0	0	0	16978	1145	40	1	98	1	UBE3C	7	156956529	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1654887	156956529	2182134	2395	28082										
NCAPG2	0	genome.wustl.edu	37	chr7	158457244	158457244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttggtgcaggcggtgtgttCgtgggcgtactgatagaacc	17	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	7	158457244	158457244	C	T	SNP	NCAPG2	ENST00000409339	human	ensembl	69_37n	-1	known	missense	c.1678	p.E560K	0.963	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918	273	0	0	159	42	20.9	-	-	-	T	158457244	C	T	158457244	3	4	275	1	0	0	0	0	1	0	0	0	10280	893	31	1	1813	1	NCAPG2	7	158457244	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1500715	158457244	681419	2396	28083										
ZNF596	0	genome.wustl.edu	37	chr8	193775	193775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattggagcaagtagagaaaCtttcaacacaaagaataagc	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	193775	193775	C	A	SNP	ZNF596	ENST00000308811	human	ensembl	69_37n	1	known	missense	c.193	p.L65I	0.949	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748	239	0	0	186	27	12.68	-	-	-	A	193775	C	A	193775	3	1	275	1	0	0	0	0	1	0	0	0	18122	565	20	4	203	4	ZNF596	8	193775	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		193775	146170247	2397	28084										
ARHGEF10	0	genome.wustl.edu	37	chr8	1842705	1842705	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcgtttccgagtgggactcCgtggaaatgataggcgatgt	15	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	1842705	1842705	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	silent	c.1482	p.S494	0.011	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	65	0	0	34	10	22.73	-	-	-	T	1842705	C	T	1842705	2	4	275	1	0	0	0	0	0	0	0	1	896	639	23	1		1	ARHGEF10	8	1842705	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1648930	1842705	144521317	2398	28085										
ARHGEF10	0	genome.wustl.edu	37	chr8	1876716	1876716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatgctgtacgttcccgtcGaggagaagcgcagagagcct	14	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	1876716	1876716	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	missense	c.2896	p.E966K	0.254	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	186	0	0	96	33	25.38	-	-	-	A	1876716	G	A	1876716	3	1	275	1	0	0	0	0	1	0	0	0	896	1059	37	1	2911	1	ARHGEF10	8	1876716	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34011	1876716	144487306	2399	28086										
MYOM2	0	genome.wustl.edu	37	chr8	2020498	2020498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttggggtcaccttcagGagggaaggcgagacggtcac	16	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	2020498	2020498	G	T	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.867	p.R289S	0.010	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	62	0	0	20	7	25.93	-	-	-	T	2020498	G	T	2020498	3	4	275	1	0	0	0	0	1	0	0	0	10164	1165	41	2	897	2	MYOM2	8	2020498	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	143782	2020498	144343524	2400	28087										
MYOM2	0	genome.wustl.edu	37	chr8	2088737	2088737	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgagccgactgagaaggatAaaggaaaatacacttttgag	12	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	2088737	2088737	A	C	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.3892	p.K1298Q	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	300	0	0	213	36	14.46	-	-	-	C	2088737	A	C	2088737	3	2	275	1	0	0	0	0	1	0	0	0	10164	363	13	5	4018	5	MYOM2	8	2088737	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	68239	2088737	144275285	2401	28088										
CSMD1	0	genome.wustl.edu	37	chr8	2823407	2823407	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacactgatagctcacagtcTtgttgaaggtgaagtcggtc	11	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	2823407	2823407	T	G	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9173	p.K3058T	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	206	0	0	146	24	14.12	-	-	-	G	2823407	T	G	2823407	3	3	275	1	0	0	0	0	1	0	0	0	3976	1609	56	5	1572	5	CSMD1	8	2823407	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	734670	2823407	143540615	2402	28089										
CSMD1	0	genome.wustl.edu	37	chr8	2944719	2944719	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcggtatccaggcttgcaAaaataatgcactttgcttcc	7	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	2944719	2944719	A	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.7377	p.F2459L	0.012	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	113	0	0	80	14	14.89	-	-	-	C	2944719	A	C	2944719	3	2	275	1	0	0	0	0	1	0	0	0	3976	11	1	5	3408	5	CSMD1	8	2944719	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	121312	2944719	143419303	2403	28090										
CSMD1	0	genome.wustl.edu	37	chr8	2967778	2967778	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatgagccaaatgcagtcCttcaggatcggatactcatc	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	2967778	2967778	C	A	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	nonsense	c.4951	p.G1651*	0.997	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	196	0	0	182	57	23.85	-	-	-	A	2967778	C	A	2967778	4	1	275	1	0	0	0	0	0	1	0	0	3976	680	24	4	4296	4	CSMD1	8	2967778	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23059	2967778	143396244	2404	28091										
CSMD1	0	genome.wustl.edu	37	chr8	3265491	3265491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattccaagcgaactatatgCccactgctggccagctggga	10	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	3265491	3265491	C	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.442	p.A148T	0.002	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	342	0	0	263	52	16.46	-	-	-	T	3265491	C	T	3265491	3	4	275	1	0	0	0	0	1	0	0	0	3976	726	26	4	8921	4	CSMD1	8	3265491	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	297713	3265491	143098531	2405	28092										
SPAG11A	0	genome.wustl.edu	37	chr8	7718270	7718270	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaaagcgtgacattagctCtgatccctggaataggtgtt	11	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	7718270	7718270	C	T	SNP	SPAG11A	ENST00000326625	human	ensembl	69_37n	1	novel	missense	c.158	p.S53F	0.871	pfam_Defensin_beta-typ	pfam_Defensin_beta-typ	-	no_errors	SPAG11A	HGNC	ENSG00000178287	263	0	0	173	31	15.2	-	-	-	T	7718270	C	T	7718270	3	4	275	1	0	0	0	0	1	0	0	0	15067	928	32	2		2	SPAG11A	8	7718270	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4452779	7718270	138645752	2406	28093										
TNKS	0	genome.wustl.edu	37	chr8	9562212	9562212	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcgggctacaacagagttCgaatagttcagcttcttctt	9	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	9562212	9562212	C	T	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	nonsense	c.1147	p.R383*	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	378	0	0	252	38	13.1	-	-	-	T	9562212	C	T	9562212	4	4	275	1	0	0	0	0	0	1	0	0	16414	876	31	1	1169	1	TNKS	8	9562212	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1843942	9562212	136801810	2407	28094										
TNKS	0	genome.wustl.edu	37	chr8	9588468	9588468	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattccacgcccttacacttCgcagcaggctacaaccgcgt	7	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	9588468	9588468	C	T	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	silent	c.2070	p.F690	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	171	0	0	108	47	30.32	-	-	-	T	9588468	C	T	9588468	2	4	275	1	0	0	0	0	0	0	0	1	16414	883	31	1		1	TNKS	8	9588468	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26256	9588468	136775554	2408	28095										
TNKS	0	genome.wustl.edu	37	chr8	9622298	9622298	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacagatacaatgtcattCgagtaagtttttaaagtttc	6	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	9622298	9622298	C	T	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	nonsense	c.3445	p.R1149*	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	100	1	0.99	129	38	22.75	-	-	-	T	9622298	C	T	9622298	4	4	275	1	0	0	0	0	0	1	0	0	16414	876	31	1	3535	1	TNKS	8	9622298	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33830	9622298	136741724	2409	28096										
MTMR9	0	genome.wustl.edu	37	chr8	11172547	11172547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaccattcgtggttttgagGccctgattgaaagagagtgg	15	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	11172547	11172547	G	A	SNP	MTMR9	ENST00000221086	human	ensembl	69_37n	1	known	missense	c.1087	p.A363T	1.000	NULL	pfam_Myotub-related	-	no_errors	MTMR9	HGNC	ENSG00000104643	315	0	0	230	29	11.2	-	-	-	A	11172547	G	A	11172547	3	1	275	1	0	0	0	0	1	0	0	0	10022	1203	42	4	1113	4	MTMR9	8	11172547	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1550249	11172547	135191475	2410	28097										
DLC1	0	genome.wustl.edu	37	chr8	12947777	12947777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaccttcttataggacagcTcagcctgctccgaagtggag	10	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	12947777	12947777	T	C	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.4058	p.E1353G	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	89	0	0	54	9	14.06	-	-	-	C	12947777	T	C	12947777	3	2	275	1	0	0	0	0	1	0	0	0	4586	1551	54	5	544	5	DLC1	8	12947777	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1775230	12947777	133416245	2411	28098										
TUSC3	0	genome.wustl.edu	37	chr8	15519668	15519668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctattgcatttttgcagattCgggttttcagaccacccaac	7	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	15519668	15519668	C	T	SNP	TUSC3	ENST00000351598	human	ensembl	69_37n	1	known	missense	c.571	p.R191W	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723	306	2	0.65	186	41	17.98	-	-	-	T	15519668	C	T	15519668	3	4	275	1	0	0	0	0	1	0	0	0	16875	875	31	1	589	1	TUSC3	8	15519668	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2571891	15519668	130844354	2412	28099										
FGF20	0	genome.wustl.edu	37	chr8	16850659	16850659	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaggtaagaaatgtgtaaaTttctgatgcctcttggacct	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	16850659	16850659	T	C	SNP	FGF20	ENST00000519941	human	ensembl	69_37n	-1	putative	missense	c.262	p.I88V	0.689	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGF20	HGNC	ENSG00000078579	233	0	0	214	29	11.89	-	-	-	C	16850659	T	C	16850659	3	2	275	1	0	0	0	0	1	0	0	0	5895	1490	52	5	81	5	FGF20	8	16850659	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1330991	16850659	129513363	2413	28100										
ZDHHC2	0	genome.wustl.edu	37	chr8	17063263	17063263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcggcaacagatttacaGtattttatcaaattttggac	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	17063263	17063263	G	A	SNP	ZDHHC2	ENST00000262096	human	ensembl	69_37n	1	known	silent	c.576	p.Q192	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC2	HGNC	ENSG00000104219	552	0	0	378	54	12.5	-	-	-	A	17063263	G	A	17063263	2	1	275	1	0	0	0	0	0	0	0	1	17706	1020	36	4		4	ZDHHC2	8	17063263	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	212604	17063263	129300759	2414	28101										
MTMR7	0	genome.wustl.edu	37	chr8	17230640	17230640	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcatacccatgtttcttttCttgggtcaggtgaattttcc	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	17230640	17230640	C	A	SNP	MTMR7	ENST00000180173	human	ensembl	69_37n	-1	known	missense	c.134	p.R45I	0.984	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987	246	0	0	232	77	24.92	-	-	-	A	17230640	C	A	17230640	3	1	275	1	0	0	0	0	1	0	0	0	10020	913	32	2	1900	2	MTMR7	8	17230640	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	167377	17230640	129133382	2415	28102										
MTUS1	0	genome.wustl.edu	37	chr8	17613055	17613055	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacctgcttactaatgaaatCactagaagacttttcatgac	5	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	17613055	17613055	C	T	SNP	MTUS1	ENST00000262102	human	ensembl	69_37n	-1	known	missense	c.262	p.D88N	0.786	NULL	superfamily_Ferritin/RR-like	-	no_errors	MTUS1	HGNC	ENSG00000129422	144	0	0	120	16	11.76	-	-	-	T	17613055	C	T	17613055	3	4	275	1	0	0	0	0	1	0	0	0	10037	826	29	2	3925	2	MTUS1	8	17613055	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	382415	17613055	128750967	2416	28103										
FGL1	0	genome.wustl.edu	37	chr8	17743002	17743002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttcccaagaagcttaccGaaatttccctgcccattgtc	6	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	17743002	17743002	G	A	SNP	FGL1	ENST00000221204	human	ensembl	69_37n	-1	known	missense	c.62	p.S21L	0.576	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGL1	HGNC	ENSG00000104760	68	0	0	51	16	23.88	-	-	-	A	17743002	G	A	17743002	3	1	275	1	0	0	0	0	1	0	0	0	5918	1072	37	1	904	1	FGL1	8	17743002	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	129947	17743002	128621020	2417	28104										
PCM1	0	genome.wustl.edu	37	chr8	17808229	17808229	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcataatcagcttcgtgattCtcaggtaacctagatgtttt	7	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	17808229	17808229	C	A	SNP	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	missense	c.1067	p.S356Y	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	254	0	0	182	30	14.15	-	-	-	A	17808229	C	A	17808229	3	1	275	1	0	0	0	0	1	0	0	0	11657	913	32	2	1089	2	PCM1	8	17808229	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	65227	17808229	128555793	2418	28105										
INTS10	0	genome.wustl.edu	37	chr8	19694646	19694646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatcccaggaggaaccctcGaaagtaaagcccaaatttag	8	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	19694646	19694646	G	A	SNP	INTS10	ENST00000521008	human	ensembl	69_37n	1	known	missense	c.55	p.E19K	0.791	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS10	HGNC	ENSG00000104613	306	0	0	282	40	12.35	-	-	-	A	19694646	G	A	19694646	3	1	275	1	0	0	0	0	1	0	0	0	7830	1045	37	1	1664	1	INTS10	8	19694646	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1886417	19694646	126669376	2419	28106										
ATP6V1B2	0	genome.wustl.edu	37	chr8	20068139	20068139	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctgttgtactggccgaaGacttccttgatatcatgggt	11	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	20068139	20068139	G	T	SNP	ATP6V1B2	ENST00000276390	human	ensembl	69_37n	1	known	missense	c.445	p.D149Y	1.000	tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416	394	0	0	214	76	26.21	-	-	-	T	20068139	G	T	20068139	3	4	275	1	0	0	0	0	1	0	0	0	1183	942	33	2	463	2	ATP6V1B2	8	20068139	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	373493	20068139	126295883	2420	28107										
ATP6V1B2	0	genome.wustl.edu	37	chr8	20077881	20077881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccctcagagcaccctcagcGaattttaccctcgagactct	6	16	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	20077881	20077881	G	A	SNP	ATP6V1B2	ENST00000276390	human	ensembl	69_37n	1	known	missense	c.1504	p.E502K	1.000	tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416	129	0	0	61	22	26.19	-	-	-	A	20077881	G	A	20077881	3	1	275	1	0	0	0	0	1	0	0	0	1183	1059	37	1	1558	1	ATP6V1B2	8	20077881	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9742	20077881	126286141	2421	28108										
LZTS1	0	genome.wustl.edu	37	chr8	20112663	20112663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcttgctgtggaagctgtgGccggagatgaggctactgac	16	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	20112663	20112663	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	silent	c.30	p.G10	1.000	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	53	0	0	29	8	21.62	-	-	-	A	20112663	G	A	20112663	2	1	275	1	0	0	0	0	0	0	0	1	9205	1190	42	4		4	LZTS1	8	20112663	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34782	20112663	126251359	2422	28109										
GFRA2	0	genome.wustl.edu	37	chr8	21608276	21608276	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggcacccggtcgaagaaCtggcgcagggccttgtggca	16	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	21608276	21608276	C	A	SNP	GFRA2	ENST00000517328	human	ensembl	69_37n	-1	known	missense	c.618	p.Q206H	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546	61	0	0	43	15	25.86	-	-	-	A	21608276	C	A	21608276	3	1	275	1	0	0	0	0	1	0	0	0	6400	564	20	4	800	4	GFRA2	8	21608276	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1495613	21608276	124755746	2423	28110										
XPO7	0	genome.wustl.edu	37	chr8	21827075	21827075	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accccctaccattggaacagCgaatagatattcgtaagtgg	9	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	21827075	21827075	C	T	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	nonsense	c.247	p.R83*	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	311	0	0	211	76	26.48	-	-	-	T	21827075	C	T	21827075	4	4	275	1	0	0	0	0	0	1	0	0	17546	760	27	1	282	1	XPO7	8	21827075	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	218799	21827075	124536947	2424	28111										
REEP4	0	genome.wustl.edu	37	chr8	21996041	21996041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacagtctttttcctcgtccGaaccttcagggagcgcgagg	11	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	21996041	21996041	G	A	SNP	REEP4	ENST00000306306	human	ensembl	69_37n	-1	known	missense	c.733	p.R245W	0.381	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC	ENSG00000168476	106	1	0.93	61	14	18.67	-	-	-	A	21996041	G	A	21996041	3	1	275	1	0	0	0	0	1	0	0	0	13290	1057	37	1	44	1	REEP4	8	21996041	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	168966	21996041	124367981	2425	28112										
PHYHIP	0	genome.wustl.edu	37	chr8	22079225	22079225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgctgggattgaagaggcGctgagctgggatctggaagc	19	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	22079225	22079225	G	A	SNP	PHYHIP	ENST00000454243	human	ensembl	69_37n	-1	known	missense	c.634	p.R212C	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490	44	0	0	35	8	18.6	-	-	-	A	22079225	G	A	22079225	3	1	275	1	0	0	0	0	1	0	0	0	11940	1087	38	1	362	1	PHYHIP	8	22079225	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83184	22079225	124284797	2426	28113										
PEBP4	0	genome.wustl.edu	37	chr8	22570925	22570925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtttttgtgcttgggctcGctggccctttctctgggagc	14	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	22570925	22570925	G	A	SNP	PEBP4	ENST00000256404	human	ensembl	69_37n	-1	known	silent	c.642	p.S214	0.000	NULL	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	PEBP4	HGNC	ENSG00000134020	134	0	0	98	138	57.5	-	-	-	A	22570925	G	A	22570925	2	1	275	1	0	0	0	0	0	0	0	1	11787	1078	38	1		1	PEBP4	8	22570925	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	491700	22570925	123793097	2427	28114										
RHOBTB2	0	genome.wustl.edu	37	chr8	22861955	22861955	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggtcccgtttaatggattCtgacatggattatgaaaggc	11	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	22861955	22861955	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	missense	c.8	p.S3F	1.000	NULL	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	67	0	0	44	5	10.2	-	-	-	T	22861955	C	T	22861955	3	4	275	1	0	0	0	0	1	0	0	0	13418	913	32	2	95	2	RHOBTB2	8	22861955	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	291030	22861955	123502067	2428	28115										
LOXL2	0	genome.wustl.edu	37	chr8	23159594	23159594	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtcaacccactggcagtcGatgtcatggcggtacatgtc	11	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	23159594	23159594	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	silent	c.2079	p.I693	0.868	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	180	0	0	113	18	13.74	-	-	-	A	23159594	G	A	23159594	2	1	275	1	0	0	0	0	0	0	0	1	8966	1048	37	1		1	LOXL2	8	23159594	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	297639	23159594	123204428	2429	28116										
NEFM	0	genome.wustl.edu	37	chr8	24774573	24774573	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcttggattttctccttaGaaaactcctggagggtgaag	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	24774573	24774573	G	T	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	splice_site	c.1206-1	e3-1	1.000	-	-	-	no_errors	NEFM	HGNC	ENSG00000104722	39	0	0	19	12	38.71	-	-	-	T	24774573	G	T	24774573	5	4	275	1	0	0	0	0	0	0	1	0	10388	956	33	2	1215	2	NEFM	8	24774573	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1614979	24774573	121589449	2430	28117										
NEFL	0	genome.wustl.edu	37	chr8	24813791	24813791	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatggacttgaggtcgttgCtgatggcggctacctggctc	16	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	24813791	24813791	C	T	SNP	NEFL	ENST00000221169	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725	84	0	0	42	12	21.82	-	-	-	T	24813791	C	T	24813791	1	4	275	0	1	0	0	0	0	0	0	0	10387	797	28	4		4	NEFL	8	24813791	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39218	24813791	121550231	2431	28118										
DOCK5	0	genome.wustl.edu	37	chr8	25174584	25174584	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtttgacaaagggaagaaGaagacgccaaagaatgtgga	14	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	25174584	25174584	G	A	SNP	DOCK5	ENST00000444569	human	ensembl	69_37n	1	novel	missense	c.694	p.E232K	1.000	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK5	HGNC	ENSG00000147459	73	0	0	103	14	11.86	-	-	-	A	25174584	G	A	25174584	3	1	275	1	0	0	0	0	1	0	0	0	4725	933	33	2	1434	2	DOCK5	8	25174584	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	360793	25174584	121189438	2432	28119										
EBF2	0	genome.wustl.edu	37	chr8	25897557	25897557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttacctacacatcacttCgtgcgtcaggagaactcggc	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	25897557	25897557	C	T	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.469	p.E157K	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	143	0	0	47	15	23.44	-	-	-	T	25897557	C	T	25897557	3	4	275	1	0	0	0	0	1	0	0	0	4916	893	31	1	1306	1	EBF2	8	25897557	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	722973	25897557	120466465	2433	28120										
STMN4	0	genome.wustl.edu	37	chr8	27094410	27094410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtttttccgcacctcctCggcgtgcttgtcctggaaag	10	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	27094410	27094410	C	T	SNP	STMN4	ENST00000350889	human	ensembl	69_37n	-1	known	missense	c.604	p.E202K	0.948	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN4	HGNC	ENSG00000015592	169	0	0	88	31	25.83	-	-	-	T	27094410	C	T	27094410	3	4	275	1	0	0	0	0	1	0	0	0	15402	893	31	1	50	1	STMN4	8	27094410	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1196853	27094410	119269612	2434	28121										
CCDC25	0	genome.wustl.edu	37	chr8	27605731	27605731	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctaggtctgggaaccgctcGactttggtcttttctaatcg	11	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	27605731	27605731	G	A	SNP	CCDC25	ENST00000356537	human	ensembl	69_37n	-1	known	silent	c.414	p.V138	0.033	NULL	pfam_DUF814	-	no_errors	CCDC25	HGNC	ENSG00000147419	934	1	0.11	636	254	28.44	-	-	-	A	27605731	G	A	27605731	2	1	275	1	0	0	0	0	0	0	0	1	2826	1045	37	1		1	CCDC25	8	27605731	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	511321	27605731	118758291	2435	28122										
ESCO2	0	genome.wustl.edu	37	chr8	27634097	27634097	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctttttacaaccaaaataAgtggtacctcaatccactgg	5	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	27634097	27634097	A	C	SNP	ESCO2	ENST00000305188	human	ensembl	69_37n	1	known	missense	c.272	p.K91T	0.998	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320	175	0	0	99	18	15.38	-	-	-	C	27634097	A	C	27634097	3	2	275	1	0	0	0	0	1	0	0	0	5286	72	3	5	278	5	ESCO2	8	27634097	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	28366	27634097	118729925	2436	28123										
PBK	0	genome.wustl.edu	37	chr8	27667908	27667908	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgcatacagagaagagttCaattactttctggtatgatt	9	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	27667908	27667908	C	A	SNP	PBK	ENST00000301905	human	ensembl	69_37n	-1	known	nonsense	c.883	p.E295*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PBK	HGNC	ENSG00000168078	181	0	0	97	29	23.02	-	-	-	A	27667908	C	A	27667908	4	1	275	1	0	0	0	0	0	1	0	0	11561	835	29	2	89	2	PBK	8	27667908	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33811	27667908	118696114	2437	28124										
SCARA5	0	genome.wustl.edu	37	chr8	27767262	27767262	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttgggtcccggtggcccTggaaaggcaaaaacagcact	12	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	27767262	27767262	T	C	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	splice_site	c.917-2	e4-2	0.993	-	-	-	no_errors	SCARA5	HGNC	ENSG00000168079	107	1	0.93	67	39	36.79	-	-	-	C	27767262	T	C	27767262	5	2	275	1	0	0	0	0	0	0	1	0	13967	1594	55	5	592	5	SCARA5	8	27767262	Splice_Site	SNP	T	TCGA-AN-A046-01A-21W-A050-09	99354	27767262	118596760	2438	28125										
ZNF395	0	genome.wustl.edu	37	chr8	28206692	28206692	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgacgatcagatgagatttCatcgcaggtgctggctgctg	14	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	28206692	28206692	C	A	SNP	ZNF395	ENST00000344423	human	ensembl	69_37n	-1	known	missense	c.1380	p.M460I	0.909	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	197	0	0	76	25	24.51	-	-	-	A	28206692	C	A	28206692	3	1	275	1	0	0	0	0	1	0	0	0	17977	826	29	2	169	2	ZNF395	8	28206692	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	439430	28206692	118157330	2439	28126										
FZD3	0	genome.wustl.edu	37	chr8	28385478	28385478	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatatccctaaacagagttCgaattgagattccattagaa	6	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	28385478	28385478	C	T	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	1	known	nonsense	c.1201	p.R401*	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	574	0	0	475	77	13.87	-	-	-	T	28385478	C	T	28385478	4	4	275	1	0	0	0	0	0	1	0	0	6180	876	31	1	1211	1	FZD3	8	28385478	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178786	28385478	117978544	2440	28127										
EXTL3	0	genome.wustl.edu	37	chr8	28574666	28574666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaggaggcccgctccttcGaagaggaaatggagggcgac	15	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	28574666	28574666	G	A	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	missense	c.1090	p.E364K	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	119	0	0	58	20	25.64	-	-	-	A	28574666	G	A	28574666	3	1	275	1	0	0	0	0	1	0	0	0	5364	1059	37	1	1092	1	EXTL3	8	28574666	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	189188	28574666	117789356	2441	28128										
DCTN6	0	genome.wustl.edu	37	chr8	30032634	30032634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatccaccctaaagcaagaaTtattgcggaagccgggccaa	10	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30032634	30032634	T	C	SNP	DCTN6	ENST00000221114	human	ensembl	69_37n	1	known	missense	c.122	p.I41T	0.993	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN6	HGNC	ENSG00000104671	139	0	0	117	14	10.61	-	-	-	C	30032634	T	C	30032634	3	2	275	1	0	0	0	0	1	0	0	0	4342	1493	52	5	132	5	DCTN6	8	30032634	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1457968	30032634	116331388	2442	28129										
GTF2E2	0	genome.wustl.edu	37	chr8	30436512	30436512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttatgagtcttaaagcgtcGctttttctgtgaagcaggct	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30436512	30436512	G	A	SNP	GTF2E2	ENST00000355904	human	ensembl	69_37n	-1	known	nonsense	c.802	p.R268*	1.000	pirsf_TFIIE-bsu	pfam_TFIIE_bsu_DNA-bd,pirsf_TFIIE-bsu	-	no_errors	GTF2E2	HGNC	ENSG00000197265	317	0	0	186	77	29.17	-	-	-	A	30436512	G	A	30436512	4	1	275	1	0	0	0	0	0	1	0	0	6908	1095	38	1	77	1	GTF2E2	8	30436512	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	403878	30436512	115927510	2443	28130										
TEX15	0	genome.wustl.edu	37	chr8	30694993	30694993	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatacagatgggttctggaGaagtcatgcatgaggaattt	14	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30694993	30694993	G	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7658	p.S2553F	0.109	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	140	0	0	90	14	13.46	-	-	-	A	30694993	G	A	30694993	3	1	275	1	0	0	0	0	1	0	0	0	15874	942	33	2	719	2	TEX15	8	30694993	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	258481	30694993	115669029	2444	28131										
TEX15	0	genome.wustl.edu	37	chr8	30700862	30700862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaaacaagattttttgcaGcatcaaaaaagatatgttcc	5	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30700862	30700862	G	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.5672	p.A1891V	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	287	2	0.69	182	42	18.75	-	-	-	A	30700862	G	A	30700862	3	1	275	1	0	0	0	0	1	0	0	0	15874	971	34	4	2713	4	TEX15	8	30700862	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5869	30700862	115663160	2445	28132										
TEX15	0	genome.wustl.edu	37	chr8	30702230	30702230	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattatcttttaaaagcagaGaactatcactggaagataat	6	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30702230	30702230	G	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.4304	p.S1435Y	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	143	1	0.69	112	16	12.5	-	-	-	T	30702230	G	T	30702230	3	4	275	1	0	0	0	0	1	0	0	0	15874	942	33	2	4081	2	TEX15	8	30702230	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1368	30702230	115661792	2446	28133										
TEX15	0	genome.wustl.edu	37	chr8	30703537	30703537	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttttaagtgaacaactgcTttgtctagttttctggaaag	8	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30703537	30703537	T	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.2997	p.K999	0.992	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	130	0	0	107	15	12.3	-	-	-	C	30703537	T	C	30703537	2	2	275	1	0	0	0	0	0	0	0	1	15874	1606	56	5		5	TEX15	8	30703537	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1307	30703537	115660485	2447	28134										
WRN	0	genome.wustl.edu	37	chr8	30941280	30941280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagtgatgaagatttagaAatggagatgcttaaggtatg	14	1	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	30941280	30941280	A	C	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	missense	c.1335	p.E445D	0.885	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	622	0	0	287	85	22.79	-	-	-	C	30941280	A	C	30941280	3	2	275	1	0	0	0	0	1	0	0	0	17499	11	1	5	1369	5	WRN	8	30941280	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	237743	30941280	115422742	2448	28135										
NRG1	0	genome.wustl.edu	37	chr8	32474365	32474365	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatagagtctcccattaGaatatcagtatccacagaag	6	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	32474365	32474365	G	T	SNP	NRG1	ENST00000518206	human	ensembl	69_37n	1	putative	nonsense	c.100	p.E34*	1.000	NULL	pfam_EGF-like_dom,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRG1	HGNC	ENSG00000157168	116	0	0	73	37	33.64	-	-	-	T	32474365	G	T	32474365	4	4	275	1	0	0	0	0	0	1	0	0	10720	942	33	2	1233	2	NRG1	8	32474365	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1533085	32474365	113889657	2449	28136										
MAK16	0	genome.wustl.edu	37	chr8	33346629	33346629	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatcacccaatacctaattCgaattagaaaacttacacta	3	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	33346629	33346629	C	T	SNP	MAK16	ENST00000360128	human	ensembl	69_37n	1	known	nonsense	c.364	p.R122*	1.000	pirsf_Mak16	pfam_Mak16,pirsf_Mak16	-	no_errors	MAK16	HGNC	ENSG00000198042	295	0	0	181	66	26.61	-	-	-	T	33346629	C	T	33346629	4	4	275	1	0	0	0	0	0	1	0	0	9269	876	31	1	382	1	MAK16	8	33346629	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	872264	33346629	113017393	2450	28137										
DUSP26	0	genome.wustl.edu	37	chr8	33451073	33451073	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggctggctcagcgcccgGtggatgaagtcggcagccgt	16	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	33451073	33451073	G	A	SNP	DUSP26	ENST00000256261	human	ensembl	69_37n	-1	known	silent	c.414	p.H138	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878	55	0	0	42	13	23.64	-	-	-	A	33451073	G	A	33451073	2	1	275	1	0	0	0	0	0	0	0	1	4858	1252	44	4		4	DUSP26	8	33451073	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	104444	33451073	112912949	2451	28138										
UNC5D	0	genome.wustl.edu	37	chr8	35406937	35406937	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcactcaggtgcaaagcGaggccagccatgcagatatt	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	35406937	35406937	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	silent	c.231	p.A77	0.005	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	83	0	0	61	20	24.69	-	-	-	A	35406937	G	A	35406937	2	1	275	1	0	0	0	0	0	0	0	1	17092	1045	37	1		1	UNC5D	8	35406937	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1955864	35406937	110957085	2452	28139										
UNC5D	0	genome.wustl.edu	37	chr8	35606161	35606161	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcactgtgcagatgtcagttCtgagcattggaatatccatt	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	35606161	35606161	C	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1883	p.S628Y	0.460	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	241	0	0	153	31	16.85	-	-	-	A	35606161	C	A	35606161	3	1	275	1	0	0	0	0	1	0	0	0	17092	913	32	2	1929	2	UNC5D	8	35606161	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	199224	35606161	110757861	2453	28140										
DDHD2	0	genome.wustl.edu	37	chr8	38111104	38111104	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagagacctctgtggcagTtaaagaagaagtcctgccta	11	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38111104	38111104	T	C	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	1	known	missense	c.1922	p.V641A	0.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	283	0	0	256	31	10.54	-	-	-	C	38111104	T	C	38111104	3	2	275	1	0	0	0	0	1	0	0	0	4358	1725	60	5	2042	5	DDHD2	8	38111104	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2504943	38111104	108252918	2454	28141										
WHSC1L1	0	genome.wustl.edu	37	chr8	38162118	38162118	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactcacctctggcacaaacGaaacaaaagcctacatttac	4	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38162118	38162118	G	A	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	silent	c.2598	p.F866	1.000	NULL	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	87	0	0	40	25	37.88	-	-	-	A	38162118	G	A	38162118	2	1	275	1	0	0	0	0	0	0	0	1	17460	1049	37	1		1	WHSC1L1	8	38162118	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	51014	38162118	108201904	2455	28142										
WHSC1L1	0	genome.wustl.edu	37	chr8	38162250	38162250	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagagtgataggcaactggAcatcttaaacatctcatcat	7	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38162250	38162250	A	G	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	silent	c.2466	p.C822	0.993	smart_Znf_PHD	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	119	0	0	85	11	11.46	-	-	-	G	38162250	A	G	38162250	2	3	275	1	0	0	0	0	0	0	0	1	17460	273	10	5		5	WHSC1L1	8	38162250	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	132	38162250	108201772	2456	28143										
FGFR1	0	genome.wustl.edu	37	chr8	38271208	38271208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggggcaggcagggctcctCgggcagcggctcatgagaga	18	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38271208	38271208	C	T	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	missense	c.2500	p.E834K	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	58	0	0	25	14	35.9	-	-	-	T	38271208	C	T	38271208	3	4	275	1	0	0	0	0	1	0	0	0	5909	893	31	1	65	1	FGFR1	8	38271208	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	108958	38271208	108092814	2457	28144										
TACC1	0	genome.wustl.edu	37	chr8	38677250	38677250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggattccacggatatctCggcagtcctcggaacaaaag	11	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38677250	38677250	C	T	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	missense	c.488	p.S163L	0.008	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	63	0	0	41	15	26.79	-	-	-	T	38677250	C	T	38677250	3	4	275	1	0	0	0	0	1	0	0	0	15593	893	31	1	498	1	TACC1	8	38677250	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	406042	38677250	107686772	2458	28145										
TACC1	0	genome.wustl.edu	37	chr8	38684895	38684895	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcatcctcagaagcaggTatggaagcatatcttcatct	7	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38684895	38684895	T	C	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	splice_site	c.1696+2	e6+2	1.000	-	-	-	no_errors	TACC1	HGNC	ENSG00000147526	245	0	0	234	29	11.03	-	-	-	C	38684895	T	C	38684895	5	2	275	1	0	0	0	0	0	0	1	0	15593	1652	57	5	1680	5	TACC1	8	38684895	Splice_Site	SNP	T	TCGA-AN-A046-01A-21W-A050-09	7645	38684895	107679127	2459	28146										
TACC1	0	genome.wustl.edu	37	chr8	38697859	38697859	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttcagcctggtataacaAaatatgtaagctaggtagct	9	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	38697859	38697859	A	G	SNP	TACC1	ENST00000522752	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TACC1	HGNC	ENSG00000147526	255	0	0	242	38	13.57	-	-	-	G	38697859	A	G	38697859	1	3	275	0	1	0	0	0	0	0	0	0	15593	29	1	5		5	TACC1	8	38697859	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	12964	38697859	107666163	2460	28147										
ADAM18	0	genome.wustl.edu	37	chr8	39467047	39467047	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgccgaatttccaaattCatttgtgacactcagtatat	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	39467047	39467047	C	A	SNP	ADAM18	ENST00000265707	human	ensembl	69_37n	1	known	nonsense	c.311	p.S104*	0.516	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619	231	0	0	91	33	26.61	-	-	-	A	39467047	C	A	39467047	4	1	275	1	0	0	0	0	0	1	0	0	239	838	29	2	329	2	ADAM18	8	39467047	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	769188	39467047	106896975	2461	28148										
IDO2	0	genome.wustl.edu	37	chr8	39843168	39843168	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaccatataaaatgcataaAaaatatactagaaggaaatg	5	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	39843168	39843168	A	C	SNP	IDO2	ENST00000343295	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.460	-	-	-	no_errors	IDO2	HGNC	ENSG00000188676	79	0	0	50	17	25	-	-	-	C	39843168	A	C	39843168	1	2	275	0	1	0	0	0	0	0	0	0	7556	29	1	5		5	IDO2	8	39843168	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	376121	39843168	106520854	2462	28149										
ANK1	0	genome.wustl.edu	37	chr8	41574525	41574525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaaatatttggccacttcCgtgtgcccggctctggctgc	11	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	41574525	41574525	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	silent	c.1350	p.T450	0.034	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	167	0	0	93	14	13.08	-	-	-	T	41574525	C	T	41574525	2	4	275	1	0	0	0	0	0	0	0	1	620	639	23	1		1	ANK1	8	41574525	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1731357	41574525	104789497	2463	28150										
PLAT	0	genome.wustl.edu	37	chr8	42045454	42045454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacttcccagcaaatccttCggggcactggcacacgaaat	9	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	42045454	42045454	C	T	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.334	p.E112K	0.000	pfam_EGF-like_dom,superfamily_Kringle-like,pfscan_EG-like_dom	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	140	0	0	106	23	17.83	-	-	-	T	42045454	C	T	42045454	3	4	275	1	0	0	0	0	1	0	0	0	12095	893	31	1	1394	1	PLAT	8	42045454	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	470929	42045454	104318568	2464	28151										
DKK4	0	genome.wustl.edu	37	chr8	42233288	42233288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcacagaacggcttctcatCgcggggctggaggcagaact	14	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	42233288	42233288	C	T	SNP	DKK4	ENST00000220812	human	ensembl	69_37n	-1	known	missense	c.172	p.D58N	0.021	pfam_Dickkopf_N	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371	191	0	0	118	30	20.13	-	-	-	T	42233288	C	T	42233288	3	4	275	1	0	0	0	0	1	0	0	0	4583	884	31	1	514	1	DKK4	8	42233288	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	187834	42233288	104130734	2465	28152										
SLC20A2	0	genome.wustl.edu	37	chr8	42294941	42294941	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcctcggggcccctgtcGatgtggattttgtgcagcag	13	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	42294941	42294941	G	A	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	silent	c.1089	p.I363	0.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	72	0	0	35	6	14.29	-	-	-	A	42294941	G	A	42294941	2	1	275	1	0	0	0	0	0	0	0	1	14528	1048	37	1		1	SLC20A2	8	42294941	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	61653	42294941	104069081	2466	28153										
SLC20A2	0	genome.wustl.edu	37	chr8	42295031	42295031	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgctcctggtgtggccgtcGaagccgaaggtgccgttgga	16	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	42295031	42295031	G	A	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	silent	c.999	p.F333	0.335	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	74	0	0	35	9	20	-	-	-	A	42295031	G	A	42295031	2	1	275	1	0	0	0	0	0	0	0	1	14528	1049	37	1		1	SLC20A2	8	42295031	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90	42295031	104068991	2467	28154										
FNTA	0	genome.wustl.edu	37	chr8	42932444	42932444	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taactctgtctggaaccaaaGatacttcgttatttctaaca	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	42932444	42932444	G	T	SNP	FNTA	ENST00000302279	human	ensembl	69_37n	1	known	missense	c.719	p.R240I	1.000	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	FNTA	HGNC	ENSG00000168522	164	0	0	163	33	16.84	-	-	-	T	42932444	G	T	42932444	3	4	275	1	0	0	0	0	1	0	0	0	6023	942	33	2	741	2	FNTA	8	42932444	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	637413	42932444	103431578	2468	28155										
PRKDC	0	genome.wustl.edu	37	chr8	48701762	48701762	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctaaggcattaataaaatCttgaatcactcctccttgat	4	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48701762	48701762	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.10705	p.D3569Y	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	111	0	0	109	17	13.49	-	-	-	A	48701762	C	A	48701762	3	1	275	1	0	0	0	0	1	0	0	0	12602	913	32	2	1726	2	PRKDC	8	48701762	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5769318	48701762	97662260	2469	28156										
PRKDC	0	genome.wustl.edu	37	chr8	48736532	48736532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaatcccacggaggacgtCgtattctccaattgatctat	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48736532	48736532	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.8806	p.D2936N	1.000	pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	368	0	0	192	50	20.66	-	-	-	T	48736532	C	T	48736532	3	4	275	1	0	0	0	0	1	0	0	0	12602	884	31	1	3669	1	PRKDC	8	48736532	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34770	48736532	97627490	2470	28157										
PRKDC	0	genome.wustl.edu	37	chr8	48749969	48749969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcatggctccagaaatttCgaataattaatctgaaaagc	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48749969	48749969	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.7562	p.R2521Q	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	52	0	0	35	15	30	-	-	-	T	48749969	C	T	48749969	3	4	275	1	0	0	0	0	1	0	0	0	12602	884	31	1	4941	1	PRKDC	8	48749969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13437	48749969	97614053	2471	28158										
PRKDC	0	genome.wustl.edu	37	chr8	48752648	48752648	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgtagaaggatgggaaacGaattccacaacggggttcag	14	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48752648	48752648	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	silent	c.7380	p.F2460	0.722	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	214	0	0	133	22	13.92	-	-	-	A	48752648	G	A	48752648	2	1	275	1	0	0	0	0	0	0	0	1	12602	1049	37	1		1	PRKDC	8	48752648	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2679	48752648	97611374	2472	28159										
PRKDC	0	genome.wustl.edu	37	chr8	48811042	48811042	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacctaccgcggcaaacgtCgtttctttgctttatttaaa	6	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48811042	48811042	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.3452	p.R1151Q	0.989	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	399	0	0	257	62	19.38	-	-	-	T	48811042	C	T	48811042	3	4	275	1	0	0	0	0	1	0	0	0	12602	884	31	1	9165	1	PRKDC	8	48811042	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	58394	48811042	97552980	2473	28160										
MCM4	0	genome.wustl.edu	37	chr8	48875552	48875552	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtgaactgtgaacacatCaaatcatttgacaaaaattt	5	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	48875552	48875552	C	T	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	silent	c.645	p.I215	0.996	superfamily_NA-bd_OB-fold-like	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	72	0	0	29	4	12.12	-	-	-	T	48875552	C	T	48875552	2	4	275	1	0	0	0	0	0	0	0	1	9460	816	29	2		2	MCM4	8	48875552	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64510	48875552	97488470	2474	28161										
PXDNL	0	genome.wustl.edu	37	chr8	52412308	52412308	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtctctggctgtagcatttCtagttggttgaaatgaatat	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	52412308	52412308	C	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	nonsense	c.403	p.E135*	0.896	smart_Leu-rich_rpt_typical-subtyp	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	586	1	0.17	419	55	11.58	-	-	-	A	52412308	C	A	52412308	4	1	275	1	0	0	0	0	0	1	0	0	12931	922	32	2	4064	2	PXDNL	8	52412308	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3536756	52412308	93951714	2475	28162										
PCMTD1	0	genome.wustl.edu	37	chr8	52746175	52746175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccagctccacaataaattCgatcatactgatgactgtca	5	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	52746175	52746175	C	T	SNP	PCMTD1	ENST00000360540	human	ensembl	69_37n	-1	known	missense	c.485	p.R162Q	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD1	HGNC	ENSG00000168300	250	0	0	145	58	28.57	-	-	-	T	52746175	C	T	52746175	3	4	275	1	0	0	0	0	1	0	0	0	11659	884	31	1	600	1	PCMTD1	8	52746175	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	333867	52746175	93617847	2476	28163										
PCMTD1	0	genome.wustl.edu	37	chr8	52773438	52773438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccattgtacttaaatatcCggttccacttcccaggttaa	5	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	52773438	52773438	C	T	SNP	PCMTD1	ENST00000360540	human	ensembl	69_37n	-1	known	missense	c.274	p.G92R	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD1	HGNC	ENSG00000168300	183	0	0	102	40	28.17	-	-	-	T	52773438	C	T	52773438	3	4	275	1	0	0	0	0	1	0	0	0	11659	661	23	1	819	1	PCMTD1	8	52773438	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27263	52773438	93590584	2477	28164										
RB1CC1	0	genome.wustl.edu	37	chr8	53568961	53568961	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattagattcttcttcatgtCtactaattaactcggaaata	4	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	53568961	53568961	C	A	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.3428	p.R1143I	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	104	0	0	93	13	12.26	-	-	-	A	53568961	C	A	53568961	3	1	275	1	0	0	0	0	1	0	0	0	13182	913	32	2	1396	2	RB1CC1	8	53568961	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	795523	53568961	92795061	2478	28165										
ATP6V1H	0	genome.wustl.edu	37	chr8	54684598	54684598	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccaaaagaaatttgatatCttcgctgatatcttcatcat	4	8	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	54684598	54684598	C	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	69_37n	-1	known	missense	c.1000	p.D334Y	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249	300	2	0.66	240	29	10.78	-	-	-	A	54684598	C	A	54684598	3	1	275	1	0	0	0	0	1	0	0	0	1193	913	32	2	471	2	ATP6V1H	8	54684598	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1115637	54684598	91679424	2479	28166										
ATP6V1H	0	genome.wustl.edu	37	chr8	54742051	54742051	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatatactgaacggtctgttCtttgcagatatgagtcatca	8	7	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	54742051	54742051	C	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	69_37n	-1	known	nonsense	c.259	p.E87*	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249	840	0	0	500	93	15.68	-	-	-	A	54742051	C	A	54742051	4	1	275	1	0	0	0	0	0	1	0	0	1193	922	32	2	1236	2	ATP6V1H	8	54742051	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	57453	54742051	91621971	2480	28167										
RGS20	0	genome.wustl.edu	37	chr8	54866734	54866734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcattccgtgaattcctccGaacagaattcagtgaggaaa	9	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	54866734	54866734	G	A	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	1	known	missense	c.842	p.R281Q	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	79	0	0	47	15	24.19	-	-	-	A	54866734	G	A	54866734	3	1	275	1	0	0	0	0	1	0	0	0	13387	1058	37	1	933	1	RGS20	8	54866734	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	124683	54866734	91497288	2481	28168										
RP1	0	genome.wustl.edu	37	chr8	55539449	55539449	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaatgacactggtgaagaaGatctccatgagacacaggtt	10	9	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	55539449	55539449	G	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.3007	p.D1003N	0.080	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	122	0	0	58	12	17.14	-	-	-	A	55539449	G	A	55539449	3	1	275	1	0	0	0	0	1	0	0	0	13618	942	33	2	3017	2	RP1	8	55539449	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	672715	55539449	90824573	2482	28169										
RP1	0	genome.wustl.edu	37	chr8	55540661	55540661	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctttgcctaagtgaaaaaGaagcagaacttgataagaaa	9	6	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	55540661	55540661	G	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	nonsense	c.4219	p.E1407*	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	51	0	0	37	12	24.49	-	-	-	T	55540661	G	T	55540661	4	4	275	1	0	0	0	0	0	1	0	0	13618	943	33	2	4229	2	RP1	8	55540661	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1212	55540661	90823361	2483	28170										
RP1	0	genome.wustl.edu	37	chr8	55542260	55542260	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggatttgcatatcgcaaaGaatctgatattgaaaatttc	8	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	55542260	55542260	G	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	nonsense	c.5818	p.E1940*	1.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	90	0	0	37	18	32.73	-	-	-	T	55542260	G	T	55542260	4	4	275	1	0	0	0	0	0	1	0	0	13618	943	33	2	5828	2	RP1	8	55542260	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1599	55542260	90821762	2484	28171										
XKR4	0	genome.wustl.edu	37	chr8	56436133	56436133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgggaagagattgtgttcGacatggtggtggggattatc	16	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	56436133	56436133	G	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1300	p.D434N	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	286	0	0	207	60	22.39	-	-	-	A	56436133	G	A	56436133	3	1	275	1	0	0	0	0	1	0	0	0	17530	1058	37	1	1310	1	XKR4	8	56436133	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	893873	56436133	89927889	2485	28172										
LYN	0	genome.wustl.edu	37	chr8	56922572	56922572	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattatgaaaatgtgctggaAagaaaaggcagaagagagac	12	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	56922572	56922572	A	C	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.1442	p.K481T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	96	0	0	81	22	21.36	-	-	-	C	56922572	A	C	56922572	3	2	275	1	0	0	0	0	1	0	0	0	9174	14	1	5	1488	5	LYN	8	56922572	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	486439	56922572	89441450	2486	28173										
CLVS1	0	genome.wustl.edu	37	chr8	62289231	62289231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctaatcgaagatccggagCttcagataaatggcttcatt	8	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	62289231	62289231	C	T	SNP	CLVS1	ENST00000325897	human	ensembl	69_37n	1	known	missense	c.523	p.L175F	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS1	HGNC	ENSG00000177182	234	0	0	175	27	13.37	-	-	-	T	62289231	C	T	62289231	3	4	275	1	0	0	0	0	1	0	0	0	3601	797	28	4	529	4	CLVS1	8	62289231	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5366659	62289231	84074791	2487	28174										
ASPH	0	genome.wustl.edu	37	chr8	62430671	62430671	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctcctttgcaggcattttCatttcttcttcctagaataa	5	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	62430671	62430671	C	A	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	nonsense	c.1912	p.E638*	1.000	pfam_Asp_Arg_b-Hydrxlase	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	328	0	0	250	42	14.38	-	-	-	A	62430671	C	A	62430671	4	1	275	1	0	0	0	0	0	1	0	0	1057	835	29	2	376	2	ASPH	8	62430671	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141440	62430671	83933351	2488	28175										
ASPH	0	genome.wustl.edu	37	chr8	62479734	62479734	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattgcatcttacctagaaaTtgttgcctgtctgagcgacg	10	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	62479734	62479734	T	G	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.1293	p.Q431H	0.994	pfscan_TPR-contain_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	278	0	0	170	47	21.66	-	-	-	G	62479734	T	G	62479734	3	3	275	1	0	0	0	0	1	0	0	0	1057	1490	52	5	1019	5	ASPH	8	62479734	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	49063	62479734	83884288	2489	28176										
ASPH	0	genome.wustl.edu	37	chr8	62559382	62559382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccataagaaactcatcatcCtcttgttgtggttctcctgt	7	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	62559382	62559382	C	A	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.546	p.E182D	0.867	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	436	0	0	336	47	12.27	-	-	-	A	62559382	C	A	62559382	3	1	275	1	0	0	0	0	1	0	0	0	1057	680	24	4	1822	4	ASPH	8	62559382	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	79648	62559382	83804640	2490	28177										
YTHDF3	0	genome.wustl.edu	37	chr8	64122335	64122335	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatgcctaataagtcaaaGaagacgtattaaagctcttt	7	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	64122335	64122335	G	T	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	389	0	0	283	44	13.46	-	-	-	T	64122335	G	T	64122335	1	4	275	0	1	0	0	0	0	0	0	0	17597	957	33	2		2	YTHDF3	8	64122335	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1562953	64122335	82241687	2491	28178										
ARMC1	0	genome.wustl.edu	37	chr8	66534538	66534538	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcaacatcatacccagttCtcctttcatcttttctctgt	3	14	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	66534538	66534538	C	A	SNP	ARMC1	ENST00000276569	human	ensembl	69_37n	-1	known	nonsense	c.235	p.E79*	1.000	pirsf_UCP013899_metal-bd	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_HeavyMe-assoc_HMA,pirsf_UCP013899_metal-bd	-	no_errors	ARMC1	HGNC	ENSG00000104442	260	0	0	172	68	28.33	-	-	-	A	66534538	C	A	66534538	4	1	275	1	0	0	0	0	0	1	0	0	953	922	32	2	633	2	ARMC1	8	66534538	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2412203	66534538	79829484	2492	28179										
ADHFE1	0	genome.wustl.edu	37	chr8	67356908	67356908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctccctcctgtgcaagtagCtatggattccctagtgaaga	10	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	67356908	67356908	C	T	SNP	ADHFE1	ENST00000396623	human	ensembl	69_37n	1	known	missense	c.278	p.A93V	0.969	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576	566	0	0	297	66	18.18	-	-	-	T	67356908	C	T	67356908	3	4	275	1	0	0	0	0	1	0	0	0	314	797	28	4	296	4	ADHFE1	8	67356908	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	822370	67356908	79007114	2493	28180										
ARFGEF1	0	genome.wustl.edu	37	chr8	68179665	68179665	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaatgtataagaaaatttCtttaaagaacacctgtgatt	5	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	68179665	68179665	C	A	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	nonsense	c.1585	p.E529*	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	168	0	0	100	17	14.53	-	-	-	A	68179665	C	A	68179665	4	1	275	1	0	0	0	0	0	1	0	0	854	922	32	2	4080	2	ARFGEF1	8	68179665	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	822757	68179665	78184357	2494	28181										
PREX2	0	genome.wustl.edu	37	chr8	68972971	68972971	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacaggcctgaggaaggcgtGcacttgggacaagcattatt	13	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	68972971	68972971	G	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	silent	c.1296	p.V432	0.979	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	322	0	0	206	35	14.52	-	-	-	T	68972971	G	T	68972971	2	4	275	1	0	0	0	0	0	0	0	1	12558	1306	46	4		4	PREX2	8	68972971	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	793306	68972971	77391051	2495	28182										
PREX2	0	genome.wustl.edu	37	chr8	69017565	69017565	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggaccttccttctcaaGaaatgctcttagcagagagg	10	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	69017565	69017565	G	T	SNP	PREX2	ENST00000529398	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	PREX2	HGNC	ENSG00000046889	86	0	0	79	24	23.3	-	-	-	T	69017565	G	T	69017565	1	4	275	0	1	0	0	0	0	0	0	0	12558	943	33	2		2	PREX2	8	69017565	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44594	69017565	77346457	2496	28183										
PREX2	0	genome.wustl.edu	37	chr8	69028131	69028131	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagatgaacaggaagattCtggtcatgacaccatcagca	11	8	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	69028131	69028131	C	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.3290	p.S1097Y	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	500	0	0	333	150	31.06	-	-	-	A	69028131	C	A	69028131	3	1	275	1	0	0	0	0	1	0	0	0	12558	913	32	2	3621	2	PREX2	8	69028131	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10566	69028131	77335891	2497	28184										
PREX2	0	genome.wustl.edu	37	chr8	69136818	69136818	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagagttcagaacacagcgAagaatttgggagtcagagac	12	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	69136818	69136818	A	G	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.4732	p.K1578E	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	202	0	0	115	37	24.18	-	-	-	G	69136818	A	G	69136818	3	3	275	1	0	0	0	0	1	0	0	0	12558	247	9	5	5115	5	PREX2	8	69136818	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	108687	69136818	77227204	2498	28185										
PRDM14	0	genome.wustl.edu	37	chr8	70981430	70981430	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaccaggaggcctgaaatCgcatggtgcaggctggctgg	18	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	70981430	70981430	C	T	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	silent	c.666	p.A222	0.610	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	34	0	0	24	7	22.58	-	-	-	T	70981430	C	T	70981430	2	4	275	1	0	0	0	0	0	0	0	1	12536	871	31	1		1	PRDM14	8	70981430	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1844612	70981430	75382592	2499	28186										
TRAM1	0	genome.wustl.edu	37	chr8	71520436	71520436	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttgcgaatcgccatgGtggggccgccgcccgcgcct	13	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	71520436	71520436	G	A	SNP	TRAM1	ENST00000521049	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.998	-	-	-	no_errors	TRAM1	HGNC	ENSG00000067167	54	0	0	29	4	12.12	-	-	-	A	71520436	G	A	71520436	1	1	275	0	1	0	0	0	0	0	0	0	16547	1276	44	4		4	TRAM1	8	71520436	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	539006	71520436	74843586	2500	28187										
LACTB2	0	genome.wustl.edu	37	chr8	71553220	71553220	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaagaatttgctgctctcGaatatttctgtgagaaatgt	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	71553220	71553220	G	A	SNP	LACTB2	ENST00000276590	human	ensembl	69_37n	-1	known	nonsense	c.658	p.R220*	0.987	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	LACTB2	HGNC	ENSG00000147592	70	0	0	44	21	32.31	-	-	-	A	71553220	G	A	71553220	4	1	275	1	0	0	0	0	0	1	0	0	8652	1066	37	1	220	1	LACTB2	8	71553220	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32784	71553220	74810802	2501	28188										
TRPA1	0	genome.wustl.edu	37	chr8	72950292	72950292	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactaaaatcatacaagtttTtattagatatgaattctaaa	3	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	72950292	72950292	T	G	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.2311	p.K771Q	0.995	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	98	0	0	82	16	16.33	-	-	-	G	72950292	T	G	72950292	3	3	275	1	0	0	0	0	1	0	0	0	16673	1850	64	5	1080	5	TRPA1	8	72950292	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1397072	72950292	73413730	2502	28189										
RDH10	0	genome.wustl.edu	37	chr8	74235228	74235228	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtacccctttattgctcaaaGaaagcaagccacaaacaata	5	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	74235228	74235228	G	T	SNP	RDH10	ENST00000240285	human	ensembl	69_37n	1	known	missense	c.983	p.R328I	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH10	HGNC	ENSG00000121039	63	0	0	40	9	16.98	-	-	-	T	74235228	G	T	74235228	3	4	275	1	0	0	0	0	1	0	0	0	13272	942	33	2	1005	2	RDH10	8	74235228	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1284936	74235228	72128794	2503	28190										
JPH1	0	genome.wustl.edu	37	chr8	75156989	75156989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgtctactggagggtgctgGggggcgttcagcttcacgta	16	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	75156989	75156989	G	A	SNP	JPH1	ENST00000342232	human	ensembl	69_37n	-1	known	silent	c.1680	p.P560	0.998	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369	176	1	0.56	102	12	10.34	-	-	-	A	75156989	G	A	75156989	2	1	275	1	0	0	0	0	0	0	0	1	8014	1219	43	4		4	JPH1	8	75156989	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	921761	75156989	71207033	2504	28191										
PI15	0	genome.wustl.edu	37	chr8	75756241	75756241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgaaaatcttgcaaaatCggcagaggcttgggcggcta	14	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	75756241	75756241	C	T	SNP	PI15	ENST00000260113	human	ensembl	69_37n	1	known	missense	c.299	p.S100L	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558	295	0	0	165	20	10.81	-	-	-	T	75756241	C	T	75756241	3	4	275	1	0	0	0	0	1	0	0	0	11942	893	31	1	305	1	PI15	8	75756241	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	599252	75756241	70607781	2505	28192										
CRISPLD1	0	genome.wustl.edu	37	chr8	75929128	75929128	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgtagcccaaattgtttCttgtgaagtaagattaagag	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	75929128	75929128	C	A	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	missense	c.881	p.S294Y	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	159	1	0.62	65	26	28.57	-	-	-	A	75929128	C	A	75929128	3	1	275	1	0	0	0	0	1	0	0	0	3912	913	32	2	907	2	CRISPLD1	8	75929128	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	172887	75929128	70434894	2506	28193										
ZFHX4	0	genome.wustl.edu	37	chr8	77618671	77618671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgtcgccaggaacctccGaattcatatgaccagcgaaa	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	77618671	77618671	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2348	p.R783Q	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	80	0	0	72	9	10.84	-	-	-	A	77618671	G	A	77618671	3	1	275	1	0	0	0	0	1	0	0	0	17731	1058	37	1	2350	1	ZFHX4	8	77618671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1689543	77618671	68745351	2507	28194										
IL7	0	genome.wustl.edu	37	chr8	79646025	79646025	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtctctttaggaaacacaAgtcattcagttttttctgtt	6	7	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	79646025	79646025	A	C	SNP	IL7	ENST00000263851	human	ensembl	69_37n	-1	known	missense	c.457	p.L153V	0.000	pfam_Interleukin_7_9,smart_Interleukin-7,pirsf_Interleukin-7,prints_Interleukin-7	pfam_Interleukin_7_9,smart_Interleukin-7,pirsf_Interleukin-7,prints_Interleukin-7	-	no_errors	IL7	HGNC	ENSG00000104432	236	0	0	135	28	17.18	-	-	-	C	79646025	A	C	79646025	3	2	275	1	0	0	0	0	1	0	0	0	7758	69	3	5	80	5	IL7	8	79646025	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2027354	79646025	66717997	2508	28195										
ZBTB10	0	genome.wustl.edu	37	chr8	81412159	81412159	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccttaaatataagcattaAatcagaagctccagagtctg	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	81412159	81412159	A	C	SNP	ZBTB10	ENST00000426744	human	ensembl	69_37n	1	known	missense	c.1403	p.K468T	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189	148	0	0	113	15	11.72	-	-	-	C	81412159	A	C	81412159	3	2	275	1	0	0	0	0	1	0	0	0	17619	14	1	5	1409	5	ZBTB10	8	81412159	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1766134	81412159	64951863	2509	28196										
ZNF704	0	genome.wustl.edu	37	chr8	81733711	81733711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catggtcaaggatccggctgGcttttttggtgtctgctgtt	13	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	81733711	81733711	G	A	SNP	ZNF704	ENST00000327835	human	ensembl	69_37n	-1	known	missense	c.119	p.A40V	0.183	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	309	0	0	229	37	13.81	-	-	-	A	81733711	G	A	81733711	3	1	275	1	0	0	0	0	1	0	0	0	18203	1203	42	4	1151	4	ZNF704	8	81733711	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	321552	81733711	64630311	2510	28197										
FABP12	0	genome.wustl.edu	37	chr8	82439299	82439299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctcgttatggtggtttCtttgccatcccagtcctgaa	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	82439299	82439299	C	T	SNP	FABP12	ENST00000360464	human	ensembl	69_37n	-1	known	missense	c.304	p.E102K	0.996	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP12	HGNC	ENSG00000197416	350	0	0	162	55	25.35	-	-	-	T	82439299	C	T	82439299	3	4	275	1	0	0	0	0	1	0	0	0	5396	922	32	2	124	2	FABP12	8	82439299	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	705588	82439299	63924723	2511	28198										
SLC7A13	0	genome.wustl.edu	37	chr8	87229945	87229945	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgcaagatatattggtctCgatgatttaaatatagaaat	7	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	87229945	87229945	C	T	SNP	SLC7A13	ENST00000297524	human	ensembl	69_37n	-1	known	silent	c.933	p.S311	0.001	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893	77	0	0	31	17	35.42	-	-	-	T	87229945	C	T	87229945	2	4	275	1	0	0	0	0	0	0	0	1	14784	871	31	1		1	SLC7A13	8	87229945	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4790646	87229945	59134077	2512	28199										
WWP1	0	genome.wustl.edu	37	chr8	87437463	87437463	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattaaaggtgggaacaaaGaaaagatcctcatggtagaa	10	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	87437463	87437463	G	T	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	missense	c.1073	p.R358I	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	WWP1	HGNC	ENSG00000123124	278	1	0.36	113	36	24.16	-	-	-	T	87437463	G	T	87437463	3	4	275	1	0	0	0	0	1	0	0	0	17512	942	33	2	1103	2	WWP1	8	87437463	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	207518	87437463	58926559	2513	28200										
CNGB3	0	genome.wustl.edu	37	chr8	87588298	87588298	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttgtttatcttcattttCtttttgtttatcttcatttt	2	5	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	87588298	87588298	C	A	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	nonsense	c.2164	p.E722*	0.007	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	880	0	0	782	91	10.38	-	-	-	A	87588298	C	A	87588298	4	1	275	1	0	0	0	0	0	1	0	0	3631	922	32	2	269	2	CNGB3	8	87588298	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	150835	87588298	58775724	2514	28201										
CNBD1	0	genome.wustl.edu	37	chr8	88364008	88364008	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttataggatttgtgaaactaCgatcaaataaagtggtaagt	9	3	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	88364008	88364008	C	T	SNP	CNBD1	ENST00000518476	human	ensembl	69_37n	1	known	nonsense	c.1138	p.R380*	0.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	294	0	0	145	20	12.12	-	-	-	T	88364008	C	T	88364008	4	4	275	1	0	0	0	0	0	1	0	0	3621	528	19	1	1172	1	CNBD1	8	88364008	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	775710	88364008	58000014	2515	28202										
OSGIN2	0	genome.wustl.edu	37	chr8	90937339	90937339	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgtgtactcagtcatattCtgtagactcaaatcttttat	6	7	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	90937339	90937339	C	A	SNP	OSGIN2	ENST00000451899	human	ensembl	69_37n	1	known	missense	c.1229	p.S410Y	0.308	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823	218	0	0	125	47	27.33	-	-	-	A	90937339	C	A	90937339	3	1	275	1	0	0	0	0	1	0	0	0	11363	913	32	2	1251	2	OSGIN2	8	90937339	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2573331	90937339	55426683	2516	28203										
TMEM64	0	genome.wustl.edu	37	chr8	91638050	91638050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattcaattccacttgagctCgatgaactacataaaacatg	5	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	91638050	91638050	C	T	SNP	TMEM64	ENST00000458549	human	ensembl	69_37n	-1	known	missense	c.992	p.R331Q	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM64	HGNC	ENSG00000180694	105	0	0	139	20	12.58	-	-	-	T	91638050	C	T	91638050	3	4	275	1	0	0	0	0	1	0	0	0	16288	884	31	1	154	1	TMEM64	8	91638050	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	700711	91638050	54725972	2517	28204										
RUNX1T1	0	genome.wustl.edu	37	chr8	92983046	92983046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttctgcagctccgtcatcGcctggcgcttcacctcattg	8	17	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	92983046	92983046	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	missense	c.1412	p.A471V	1.000	prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	55	0	0	46	7	12.96	-	-	-	A	92983046	G	A	92983046	3	1	275	1	0	0	0	0	1	0	0	0	13833	1087	38	1	443	1	RUNX1T1	8	92983046	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1344996	92983046	53380976	2518	28205										
FAM92A1	0	genome.wustl.edu	37	chr8	94713462	94713462	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttccctaggaacgctcaaAcgaaacaactgcaaacagct	6	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	94713462	94713462	A	C	SNP	FAM92A1	ENST00000518322	human	ensembl	69_37n	1	known	missense	c.37	p.T13P	1.000	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92A1	HGNC	ENSG00000188343	100	0	0	56	10	15.15	-	-	-	C	94713462	A	C	94713462	3	2	275	1	0	0	0	0	1	0	0	0	5698	43	2	5	43	5	FAM92A1	8	94713462	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1730416	94713462	51650560	2519	28206										
RBM12B	0	genome.wustl.edu	37	chr8	94745982	94745982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctgggcgaccaaaattcAcaaaagggcggtgacttcta	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	94745982	94745982	A	G	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	missense	c.2657	p.V886A	0.997	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	94	0	0	46	6	11.54	-	-	-	G	94745982	A	G	94745982	3	3	275	1	0	0	0	0	1	0	0	0	13197	159	6	5	352	5	RBM12B	8	94745982	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	32520	94745982	51618040	2520	28207										
PDP1	0	genome.wustl.edu	37	chr8	94935867	94935867	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgtagttcagttcaattCtcatgttgtaggggcgtatc	10	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	94935867	94935867	C	A	SNP	PDP1	ENST00000396200	human	ensembl	69_37n	1	known	missense	c.1655	p.S552Y	1.000	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PDP1	HGNC	ENSG00000164951	86	0	0	56	33	37.08	-	-	-	A	94935867	C	A	94935867	3	1	275	1	0	0	0	0	1	0	0	0	11758	913	32	2	1763	2	PDP1	8	94935867	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	189885	94935867	51428155	2521	28208										
DPY19L4	0	genome.wustl.edu	37	chr8	95789985	95789985	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacacttttcaagtggcttCgattaagaactgtacaccca	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	95789985	95789985	C	T	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	1	known	nonsense	c.1546	p.R516*	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162	150	0	0	165	23	12.23	-	-	-	T	95789985	C	T	95789985	4	4	275	1	0	0	0	0	0	1	0	0	4778	876	31	1	1600	1	DPY19L4	8	95789985	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	854118	95789985	50574037	2522	28209										
DPY19L4	0	genome.wustl.edu	37	chr8	95800177	95800177	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttataaaatactgacatCttacaaagctaattacctaa	2	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	95800177	95800177	C	A	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	1	known	missense	c.1904	p.S635Y	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162	98	0	0	62	8	11.43	-	-	-	A	95800177	C	A	95800177	3	1	275	1	0	0	0	0	1	0	0	0	4778	913	32	2	1974	2	DPY19L4	8	95800177	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10192	95800177	50563845	2523	28210										
INTS8	0	genome.wustl.edu	37	chr8	95837220	95837220	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctccgcctgataacaagaGaaatcgtattttaaaactac	5	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	95837220	95837220	G	T	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	missense	c.230	p.R77I	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	120	0	0	65	13	16.67	-	-	-	T	95837220	G	T	95837220	3	4	275	1	0	0	0	0	1	0	0	0	7838	942	33	2	236	2	INTS8	8	95837220	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	37043	95837220	50526802	2524	28211										
PTDSS1	0	genome.wustl.edu	37	chr8	97318695	97318695	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgagttgaataccttcttCttgaagcatatctttgtgtt	7	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	97318695	97318695	C	A	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	missense	c.918	p.F306L	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	147	0	0	138	81	36.99	-	-	-	A	97318695	C	A	97318695	3	1	275	1	0	0	0	0	1	0	0	0	12816	912	32	2	948	2	PTDSS1	8	97318695	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1481475	97318695	49045327	2525	28212										
PTDSS1	0	genome.wustl.edu	37	chr8	97318750	97318750	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattaagttggggtagaattCtctttattggtggcatcaca	10	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	97318750	97318750	C	A	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	missense	c.973	p.L325I	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	164	0	0	105	97	48.02	-	-	-	A	97318750	C	A	97318750	3	1	275	1	0	0	0	0	1	0	0	0	12816	913	32	2	1003	2	PTDSS1	8	97318750	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	55	97318750	49045272	2526	28213										
TSPYL5	0	genome.wustl.edu	37	chr8	98289179	98289179	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaatacgggttgcgatcGaagtagaacttgattttgta	12	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	98289179	98289179	G	A	SNP	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	silent	c.894	p.F298	0.059	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	129	0	0	100	19	15.83	-	-	-	A	98289179	G	A	98289179	2	1	275	1	0	0	0	0	0	0	0	1	16758	1049	37	1		1	TSPYL5	8	98289179	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	970429	98289179	48074843	2527	28214										
MTDH	0	genome.wustl.edu	37	chr8	98731394	98731394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagcactagtgatccagccGaagtactcgtcaaaaatagc	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	98731394	98731394	G	A	SNP	MTDH	ENST00000336273	human	ensembl	69_37n	1	known	missense	c.1498	p.E500K	1.000	NULL	NULL	-	no_errors	MTDH	HGNC	ENSG00000147649	124	0	0	79	38	32.48	-	-	-	A	98731394	G	A	98731394	3	1	275	1	0	0	0	0	1	0	0	0	9989	1059	37	1	1536	1	MTDH	8	98731394	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	442215	98731394	47632628	2528	28215										
MATN2	0	genome.wustl.edu	37	chr8	98943356	98943356	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatatggcagcactgtcaaGaatgagttctccctcaagac	8	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	98943356	98943356	G	T	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.318	p.K106N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	106	0	0	80	11	12.09	-	-	-	T	98943356	G	T	98943356	3	4	275	1	0	0	0	0	1	0	0	0	9405	933	33	2	324	2	MATN2	8	98943356	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	211962	98943356	47420666	2529	28216										
STK3	0	genome.wustl.edu	37	chr8	99539065	99539065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgttctgattacagttttCgtgactcttattcttgaagt	7	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	99539065	99539065	C	T	SNP	STK3	ENST00000419617	human	ensembl	69_37n	-1	known	missense	c.1222	p.E408K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK3	HGNC	ENSG00000104375	284	0	0	181	74	29.02	-	-	-	T	99539065	C	T	99539065	3	4	275	1	0	0	0	0	1	0	0	0	15386	893	31	1	261	1	STK3	8	99539065	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	595709	99539065	46824957	2530	28217										
VPS13B	0	genome.wustl.edu	37	chr8	100520138	100520138	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctctggcttctttccttCtgtaagaaattactttaaat	5	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	100520138	100520138	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.4298	p.S1433F	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	272	1	0.37	211	29	12.08	-	-	-	T	100520138	C	T	100520138	3	4	275	1	0	0	0	0	1	0	0	0	17287	927	32	2	4598	2	VPS13B	8	100520138	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	981073	100520138	45843884	2531	28218										
VPS13B	0	genome.wustl.edu	37	chr8	100865937	100865937	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataacaagtccaatttccaCtttgctgtcttagtctgcca	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	100865937	100865937	C	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.10395	p.H3465Q	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	113	0	0	75	22	22.68	-	-	-	A	100865937	C	A	100865937	3	1	275	1	0	0	0	0	1	0	0	0	17287	564	20	4	10807	4	VPS13B	8	100865937	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	345799	100865937	45498085	2532	28219										
RGS22	0	genome.wustl.edu	37	chr8	101076051	101076051	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtatatataggagcttaaAaattcttcacatgttgagaa	7	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101076051	101076051	A	C	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.945	p.F315L	0.955	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	158	0	0	96	46	32.39	-	-	-	C	101076051	A	C	101076051	3	2	275	1	0	0	0	0	1	0	0	0	13389	11	1	5	2929	5	RGS22	8	101076051	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	210114	101076051	45287971	2533	28220										
FBXO43	0	genome.wustl.edu	37	chr8	101154164	101154164	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcctgaagtttcagggtgCtcatagagtaatgttgggcc	14	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101154164	101154164	C	T	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	silent	c.318	p.E106	0.018	NULL	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	129	0	0	78	20	20.41	-	-	-	T	101154164	C	T	101154164	2	4	275	1	0	0	0	0	0	0	0	1	5798	796	28	4		4	FBXO43	8	101154164	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	78113	101154164	45209858	2534	28221										
FBXO43	0	genome.wustl.edu	37	chr8	101154234	101154234	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatattatcaaagctacaaGattttaactcattgtagcca	4	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101154234	101154234	G	T	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	missense	c.248	p.S83Y	0.011	NULL	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	23	0	0	16	6	27.27	-	-	-	T	101154234	G	T	101154234	3	4	275	1	0	0	0	0	1	0	0	0	5798	942	33	2	1894	2	FBXO43	8	101154234	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70	101154234	45209788	2535	28222										
SPAG1	0	genome.wustl.edu	37	chr8	101196183	101196183	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattgttctttcatttaaGatttgacgtggagaaggaat	9	3	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101196183	101196183	G	T	SNP	SPAG1	ENST00000251809	human	ensembl	69_37n	1	known	splice_site	c.489-1	e5-1	1.000	-	-	-	no_errors	SPAG1	HGNC	ENSG00000104450	148	0	0	109	13	10.66	-	-	-	T	101196183	G	T	101196183	5	4	275	1	0	0	0	0	0	0	1	0	15066	956	33	2	506	2	SPAG1	8	101196183	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41949	101196183	45167839	2536	28223										
SNX31	0	genome.wustl.edu	37	chr8	101642582	101642582	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagttttaaaaactcaacGaagacatcacttctcaacac	4	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101642582	101642582	G	A	SNP	SNX31	ENST00000311812	human	ensembl	69_37n	-1	known	silent	c.294	p.F98	0.657	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX31	HGNC	ENSG00000174226	151	0	0	177	20	10.15	-	-	-	A	101642582	G	A	101642582	2	1	275	1	0	0	0	0	0	0	0	1	14990	1049	37	1		1	SNX31	8	101642582	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	446399	101642582	44721440	2537	28224										
SNX31	0	genome.wustl.edu	37	chr8	101661534	101661534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accgtgcagctggctgtagcGcaccctgcagaagaggaacc	13	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101661534	101661534	G	A	SNP	SNX31	ENST00000311812	human	ensembl	69_37n	-1	known	missense	c.109	p.R37C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX31	HGNC	ENSG00000174226	75	0	0	31	8	20.51	-	-	-	A	101661534	G	A	101661534	3	1	275	1	0	0	0	0	1	0	0	0	14990	1087	38	1	1265	1	SNX31	8	101661534	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18952	101661534	44702488	2538	28225										
YWHAZ	0	genome.wustl.edu	37	chr8	101936232	101936232	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagcgtgctgtctttgtatGactcttcacttaatgtatca	7	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	101936232	101936232	G	A	SNP	YWHAZ	ENST00000353245	human	ensembl	69_37n	-1	known	missense	c.629	p.S210L	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAZ	HGNC	ENSG00000164924	148	0	0	146	23	13.61	-	-	-	A	101936232	G	A	101936232	3	1	275	1	0	0	0	0	1	0	0	0	17603	1294	45	2	116	2	YWHAZ	8	101936232	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	274698	101936232	44427790	2539	28226										
NCALD	0	genome.wustl.edu	37	chr8	102731603	102731603	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttacactcaaggcgatgatGaattctctaaagtctattgt	8	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	102731603	102731603	G	T	SNP	NCALD	ENST00000311028	human	ensembl	69_37n	-1	known	missense	c.255	p.F85L	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490	145	0	0	73	15	17.05	-	-	-	T	102731603	G	T	102731603	3	4	275	1	0	0	0	0	1	0	0	0	10273	1281	45	2	338	2	NCALD	8	102731603	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	795371	102731603	43632419	2540	28227										
RRM2B	0	genome.wustl.edu	37	chr8	103220448	103220448	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgaaactcgtttctcaaaGaaatttgtttttccttctaa	4	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	103220448	103220448	G	T	SNP	RRM2B	ENST00000251810	human	ensembl	69_37n	-1	known	missense	c.969	p.F323L	1.000	superfamily_Ferritin/RR-like	pfam_Ribonucl_Rdtase_small,superfamily_Ferritin/RR-like	-	no_errors	RRM2B	HGNC	ENSG00000048392	138	0	0	144	24	14.29	-	-	-	T	103220448	G	T	103220448	3	4	275	1	0	0	0	0	1	0	0	0	13769	933	33	2	90	2	RRM2B	8	103220448	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	488845	103220448	43143574	2541	28228										
UBR5	0	genome.wustl.edu	37	chr8	103323670	103323670	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttattcctcccatgcaatCtttggccattgggtagatgg	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	103323670	103323670	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.2473	p.D825Y	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	129	1	0.77	73	12	13.95	-	-	-	A	103323670	C	A	103323670	3	1	275	1	0	0	0	0	1	0	0	0	17002	913	32	2	6086	2	UBR5	8	103323670	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103222	103323670	43040352	2542	28229										
KLF10	0	genome.wustl.edu	37	chr8	103664009	103664009	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgggttcttcttctaaaaGaattgttctgatagttgagg	12	4	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	103664009	103664009	G	T	SNP	KLF10	ENST00000285407	human	ensembl	69_37n	-1	known	missense	c.551	p.S184Y	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090	120	0	0	66	8	10.81	-	-	-	T	103664009	G	T	103664009	3	4	275	1	0	0	0	0	1	0	0	0	8391	942	33	2	899	2	KLF10	8	103664009	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	340339	103664009	42700013	2543	28230										
DCAF13	0	genome.wustl.edu	37	chr8	104447988	104447988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtttcgataaatctattcGaatctttcctgtagacaaaa	5	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	104447988	104447988	G	A	SNP	DCAF13	ENST00000297579	human	ensembl	69_37n	1	known	missense	c.1376	p.R459Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934	252	1	0.4	160	26	13.9	-	-	-	A	104447988	G	A	104447988	3	1	275	1	0	0	0	0	1	0	0	0	4298	1058	37	1	1406	1	DCAF13	8	104447988	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	783979	104447988	41916034	2544	28231										
RIMS2	0	genome.wustl.edu	37	chr8	104948870	104948870	+	Nonsense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctccagtccaccgaagaGaatttcgggaacgaatgcta							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	104948870	104948870	G	T	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	nonsense	c.2467	p.E823*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	219	0	0	111	32	22.38	-	-	-	T	104948870	G	T	104948870	4	4	275	1	0	0	0	0	0	1	0	0	13454	943	33	2	2643	2	RIMS2	8	104948870	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	500882	104948870	41415152	2545	28232	240	2								
RIMS2	0	genome.wustl.edu	37	chr8	104948877	104948877	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtccaccgaagagaatttcGggaacgaatgctagagatta							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	104948877	104948877	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2474	p.R825Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	210	0	0	88	43	32.82	-	-	-	A	104948877	G	A	104948877	3	1	275	1	0	0	0	0	1	0	0	0	13454	1116	39	1	2650	1	RIMS2	8	104948877	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7	104948877	41415145	2546	28233	240	2								
RIMS2	0	genome.wustl.edu	37	chr8	104948941	104948941	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagaggaagaaagtgaattCttaggcgaggtatctggagt	15	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	104948941	104948941	C	A	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2538	p.F846L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	116	0	0	77	9	10.47	-	-	-	A	104948941	C	A	104948941	3	1	275	1	0	0	0	0	1	0	0	0	13454	912	32	2	2714	2	RIMS2	8	104948941	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64	104948941	41415081	2547	28234										
OXR1	0	genome.wustl.edu	37	chr8	107719114	107719114	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggattcttttcttcatgaGaattcgttacaccaagaaga	7	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	107719114	107719114	G	T	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.1368	p.E456D	0.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	155	0	0	109	19	14.73	-	-	-	T	107719114	G	T	107719114	3	4	275	1	0	0	0	0	1	0	0	0	11407	933	33	2	1598	2	OXR1	8	107719114	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2770173	107719114	38644908	2548	28235										
OXR1	0	genome.wustl.edu	37	chr8	107726113	107726113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatatatgcagaagatactgGcgaatataccagagaacctg	9	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	107726113	107726113	G	A	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.1859	p.G620D	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	103	0	0	58	11	15.94	-	-	-	A	107726113	G	A	107726113	3	1	275	1	0	0	0	0	1	0	0	0	11407	1203	42	4	2097	4	OXR1	8	107726113	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6999	107726113	38637909	2549	28236										
OXR1	0	genome.wustl.edu	37	chr8	107751708	107751708	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactacaagggaagacataaAttcaaagcaggttgctacag	9	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	107751708	107751708	A	G	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.2063	p.N688S	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	133	0	0	112	18	13.85	-	-	-	G	107751708	A	G	107751708	3	3	275	1	0	0	0	0	1	0	0	0	11407	101	4	5	2224	5	OXR1	8	107751708	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	25595	107751708	38612314	2550	28237										
PKHD1L1	0	genome.wustl.edu	37	chr8	110437359	110437359	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtttgtctacagaggaaatAattggccaggcgagtcaaaa	11	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	110437359	110437359	A	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.2743	p.N915H	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	141	0	0	65	16	19.75	-	-	-	C	110437359	A	C	110437359	3	2	275	1	0	0	0	0	1	0	0	0	12046	362	13	5	2837	5	PKHD1L1	8	110437359	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2685651	110437359	35926663	2551	28238										
PKHD1L1	0	genome.wustl.edu	37	chr8	110509426	110509426	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaccctggttgacaatggAatggccatttttccaatgat	10	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	110509426	110509426	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.10524	p.G3508	0.976	superfamily_Pectin_lyase_fold/virulence	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	307	1	0.32	193	39	16.74	-	-	-	G	110509426	A	G	110509426	2	3	275	1	0	0	0	0	0	0	0	1	12046	233	9	5		5	PKHD1L1	8	110509426	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	72067	110509426	35854596	2552	28239										
PKHD1L1	0	genome.wustl.edu	37	chr8	110520337	110520337	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttctaggaattattagaGattcaacctgtaagtacctt	7	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	110520337	110520337	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11239	p.D3747N	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	320	0	0	174	46	20.91	-	-	-	A	110520337	G	A	110520337	3	1	275	1	0	0	0	0	1	0	0	0	12046	942	33	2	11517	2	PKHD1L1	8	110520337	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10911	110520337	35843685	2553	28240										
PKHD1L1	0	genome.wustl.edu	37	chr8	110520386	110520386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagagctatcagtgctttgGgatggaatatgcaatgatgg	14	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	110520386	110520386	G	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11288	p.G3763V	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	451	0	0	224	89	28.43	-	-	-	T	110520386	G	T	110520386	3	4	275	1	0	0	0	0	1	0	0	0	12046	1232	43	4	11566	4	PKHD1L1	8	110520386	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49	110520386	35843636	2554	28241										
PKHD1L1	0	genome.wustl.edu	37	chr8	110530483	110530483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctttatcttttggttaaagGaactatacctgttgaaattc	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	110530483	110530483	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11777	p.G3926E	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	209	0	0	176	21	10.66	-	-	-	A	110530483	G	A	110530483	3	1	275	1	0	0	0	0	1	0	0	0	12046	1174	41	2	12067	2	PKHD1L1	8	110530483	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10097	110530483	35833539	2555	28242										
CSMD3	0	genome.wustl.edu	37	chr8	113314091	113314091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttacagcagagcccacaaGcatgaatcccaagtcgcagg	9	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	113314091	113314091	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.8371	p.L2791F	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	546	0	0	272	83	23.31	-	-	-	A	113314091	G	A	113314091	3	1	275	1	0	0	0	0	1	0	0	0	3978	971	34	4	2828	4	CSMD3	8	113314091	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2783608	113314091	33049931	2556	28243										
CSMD3	0	genome.wustl.edu	37	chr8	113323300	113323300	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaacaagtcggaatcctcGatcacaggcccaacggacca	8	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	113323300	113323300	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	nonsense	c.7792	p.R2598*	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	232	0	0	109	19	14.73	-	-	-	A	113323300	G	A	113323300	4	1	275	1	0	0	0	0	0	1	0	0	3978	1066	37	1	3419	1	CSMD3	8	113323300	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9209	113323300	33040722	2557	28244										
CSMD3	0	genome.wustl.edu	37	chr8	113418791	113418791	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcattccactgggccaaaGaattgggcactgtttcacac	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	113418791	113418791	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.5771	p.S1924Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	206	0	0	98	44	30.99	-	-	-	T	113418791	G	T	113418791	3	4	275	1	0	0	0	0	1	0	0	0	3978	942	33	2	5500	2	CSMD3	8	113418791	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	95491	113418791	32945231	2558	28245										
CSMD3	0	genome.wustl.edu	37	chr8	113960037	113960037	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctaaaatctgatccgattCtcttcccattttctggttct	4	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	113960037	113960037	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.1490	p.R497K	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	403	0	0	238	52	17.93	-	-	-	T	113960037	C	T	113960037	3	4	275	1	0	0	0	0	1	0	0	0	3978	913	32	2	9885	2	CSMD3	8	113960037	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	541246	113960037	32403985	2559	28246										
TRPS1	0	genome.wustl.edu	37	chr8	116426338	116426338	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgtgaagtcatatttgtcCgtgcaaagatgctggcatat	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	116426338	116426338	C	T	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	silent	c.3798	p.T1266	1.000	smart_Znf_C2H2-like	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	132	0	0	73	24	24.49	-	-	-	T	116426338	C	T	116426338	2	4	275	1	0	0	0	0	0	0	0	1	16689	639	23	1		1	TRPS1	8	116426338	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2466301	116426338	29937684	2560	28247										
TRPS1	0	genome.wustl.edu	37	chr8	116426955	116426955	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgaactatttcctggatCtccagtactttcctgaggac	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	116426955	116426955	C	A	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	missense	c.3181	p.D1061Y	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	210	0	0	155	23	12.92	-	-	-	A	116426955	C	A	116426955	3	1	275	1	0	0	0	0	1	0	0	0	16689	913	32	2	707	2	TRPS1	8	116426955	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	617	116426955	29937067	2561	28248										
RAD21	0	genome.wustl.edu	37	chr8	117859871	117859871	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggcagcttgttttctgttCgtatttcgacataactcaag	9	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	117859871	117859871	C	T	SNP	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	silent	c.1764	p.T588	0.941	pfam_Rad21/Rec8_C_eu,pfam_ScpA	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	229	1	0.43	150	25	14.29	-	-	-	T	117859871	C	T	117859871	2	4	275	1	0	0	0	0	0	0	0	1	13064	871	31	1		1	RAD21	8	117859871	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1432916	117859871	28504151	2562	28249										
RAD21	0	genome.wustl.edu	37	chr8	117875375	117875375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtttaacaatacctggccGaaaagccatctttatcttaa	5	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	117875375	117875375	G	A	SNP	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	missense	c.268	p.R90W	1.000	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	327	0	0	222	79	26.25	-	-	-	A	117875375	G	A	117875375	3	1	275	1	0	0	0	0	1	0	0	0	13064	1057	37	1	1675	1	RAD21	8	117875375	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15504	117875375	28488647	2563	28250										
COLEC10	0	genome.wustl.edu	37	chr8	120116067	120116067	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgattgtggaagataccgGaaatttgttggacaactgga	13	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120116067	120116067	G	A	SNP	COLEC10	ENST00000332843	human	ensembl	69_37n	1	known	silent	c.375	p.R125	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC10	HGNC	ENSG00000184374	470	0	0	279	47	14.42	-	-	-	A	120116067	G	A	120116067	2	1	275	1	0	0	0	0	0	0	0	1	3740	1161	41	2		2	COLEC10	8	120116067	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2240692	120116067	26247955	2564	28251										
ENPP2	0	genome.wustl.edu	37	chr8	120581516	120581516	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggacatctgcttatcatttTtgtaggccaaacagttctga	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120581516	120581516	T	G	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.2168	p.K723T	1.000	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	326	0	0	246	44	15.17	-	-	-	G	120581516	T	G	120581516	3	3	275	1	0	0	0	0	1	0	0	0	5167	1841	64	5	599	5	ENPP2	8	120581516	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	465449	120581516	25782506	2565	28252										
ENPP2	0	genome.wustl.edu	37	chr8	120602772	120602772	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgttgctaaatttggatcGaattcttcctagagttccag	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120602772	120602772	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	nonsense	c.1336	p.R446*	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	223	0	0	132	23	14.84	-	-	-	A	120602772	G	A	120602772	4	1	275	1	0	0	0	0	0	1	0	0	5167	1066	37	1	1542	1	ENPP2	8	120602772	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21256	120602772	25761250	2566	28253										
ENPP2	0	genome.wustl.edu	37	chr8	120608142	120608142	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctatgtatttttcttcttCttttctttggaggagcaact	6	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120608142	120608142	C	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1073	p.R358I	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	250	0	0	150	64	29.91	-	-	-	A	120608142	C	A	120608142	3	1	275	1	0	0	0	0	1	0	0	0	5167	913	32	2	1813	2	ENPP2	8	120608142	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5370	120608142	25755880	2567	28254										
ENPP2	0	genome.wustl.edu	37	chr8	120650706	120650706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccttctgctctcttaattCgatgtgcagtgaatcctaag	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120650706	120650706	C	T	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.95	p.R32Q	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	262	0	0	142	48	25.26	-	-	-	T	120650706	C	T	120650706	3	4	275	1	0	0	0	0	1	0	0	0	5167	884	31	1	2831	1	ENPP2	8	120650706	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42564	120650706	25713316	2568	28255										
TAF2	0	genome.wustl.edu	37	chr8	120756623	120756623	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatctcctcctcatcttgaGaactggaaaactaaaacaca	4	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120756623	120756623	G	T	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	missense	c.3119	p.S1040Y	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	189	0	0	109	41	27.33	-	-	-	T	120756623	G	T	120756623	3	4	275	1	0	0	0	0	1	0	0	0	15616	942	33	2	492	2	TAF2	8	120756623	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	105917	120756623	25607399	2569	28256										
TAF2	0	genome.wustl.edu	37	chr8	120814105	120814105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatttgacgctgctgtagGaatggtaagcatataatgga	12	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	120814105	120814105	G	A	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	missense	c.721	p.P241S	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	254	0	0	193	56	22.49	-	-	-	A	120814105	G	A	120814105	3	1	275	1	0	0	0	0	1	0	0	0	15616	1174	41	2	2962	2	TAF2	8	120814105	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57482	120814105	25549917	2570	28257										
COL14A1	0	genome.wustl.edu	37	chr8	121210134	121210134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagtgattgaagctgtccGaaacctcccatataaaggag	10	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121210134	121210134	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.677	p.R226Q	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	202	0	0	92	30	24.39	-	-	-	A	121210134	G	A	121210134	3	1	275	1	0	0	0	0	1	0	0	0	3701	1058	37	1	699	1	COL14A1	8	121210134	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	396029	121210134	25153888	2571	28258										
COL14A1	0	genome.wustl.edu	37	chr8	121222013	121222013	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgctttaccgatggcttCtgaccttctactgtacgacg	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121222013	121222013	C	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.1340	p.S447Y	0.880	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	175	0	0	84	40	32.26	-	-	-	A	121222013	C	A	121222013	3	1	275	1	0	0	0	0	1	0	0	0	3701	913	32	2	1382	2	COL14A1	8	121222013	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11879	121222013	25142009	2572	28259										
COL14A1	0	genome.wustl.edu	37	chr8	121228689	121228689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagacagatcaatggttatcGaattgtatataacaatgcag	8	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121228689	121228689	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.1697	p.R566Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	226	0	0	169	23	11.98	-	-	-	A	121228689	G	A	121228689	3	1	275	1	0	0	0	0	1	0	0	0	3701	1058	37	1	1747	1	COL14A1	8	121228689	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6676	121228689	25135333	2573	28260										
COL14A1	0	genome.wustl.edu	37	chr8	121256156	121256156	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaacaacctccttctgaaGcctctgcttcctgatactga	6	14	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121256156	121256156	G	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.2388	p.K796N	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	242	0	0	149	24	13.87	-	-	-	T	121256156	G	T	121256156	3	4	275	1	0	0	0	0	1	0	0	0	3701	962	34	4	2462	4	COL14A1	8	121256156	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	27467	121256156	25107866	2574	28261										
COL14A1	0	genome.wustl.edu	37	chr8	121290694	121290694	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaagcaattaagtatgttCgagataccttgttcactgca	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121290694	121290694	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	nonsense	c.3358	p.R1120*	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	280	0	0	178	22	11	-	-	-	T	121290694	C	T	121290694	4	4	275	1	0	0	0	0	0	1	0	0	3701	876	31	1	3464	1	COL14A1	8	121290694	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34538	121290694	25073328	2575	28262										
SNTB1	0	genome.wustl.edu	37	chr8	121823756	121823756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcaccttcacgccacgctTctggttcgagatggactcgg	11	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	121823756	121823756	T	G	SNP	SNTB1	ENST00000395601	human	ensembl	69_37n	-1	known	missense	c.328	p.K110Q	1.000	superfamily_PDZ,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164	23	0	0	11	5	31.25	-	-	-	G	121823756	T	G	121823756	3	3	275	1	0	0	0	0	1	0	0	0	14961	1792	62	5	1316	5	SNTB1	8	121823756	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	533062	121823756	24540266	2576	28263										
HAS2	0	genome.wustl.edu	37	chr8	122626673	122626673	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttggcgggaagtaaactCgacatgtataacactgagta	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	122626673	122626673	C	T	SNP	HAS2	ENST00000303924	human	ensembl	69_37n	-1	known	silent	c.1335	p.S445	0.776	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	125	0	0	98	18	15.52	-	-	-	T	122626673	C	T	122626673	2	4	275	1	0	0	0	0	0	0	0	1	7013	871	31	1		1	HAS2	8	122626673	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	802917	122626673	23737349	2577	28264										
ZHX1	0	genome.wustl.edu	37	chr8	124267926	124267926	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgttccgaatccacatgAaaagtaaacatatttagatc	7	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	124267926	124267926	A	G	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	silent	c.261	p.F87	0.504	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	215	0	0	167	25	13.02	-	-	-	G	124267926	A	G	124267926	2	3	275	1	0	0	0	0	0	0	0	1	17771	243	9	5		5	ZHX1	8	124267926	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1641253	124267926	22096096	2578	28265										
ATAD2	0	genome.wustl.edu	37	chr8	124383979	124383979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacttctaatcctacaacttCgacgcacttcaacatcacca	3	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	124383979	124383979	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.467	p.R156Q	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	310	0	0	219	38	14.73	-	-	-	T	124383979	C	T	124383979	3	4	275	1	0	0	0	0	1	0	0	0	1075	884	31	1	3805	1	ATAD2	8	124383979	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	116053	124383979	21980043	2579	28266										
FAM91A1	0	genome.wustl.edu	37	chr8	124787444	124787444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaactgctaaagtacagccGagatcatctcatgctgtacc	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	124787444	124787444	G	A	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.215	p.R72Q	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	218	0	0	153	29	15.93	-	-	-	A	124787444	G	A	124787444	3	1	275	1	0	0	0	0	1	0	0	0	5697	1058	37	1	225	1	FAM91A1	8	124787444	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	403465	124787444	21576578	2580	28267										
FER1L6	0	genome.wustl.edu	37	chr8	124988211	124988211	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtgagactctacaaagcaGaagggttgcccaaaatgaat	10	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	124988211	124988211	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	319	0	0	238	84	26.09	-	-	-	A	124988211	G	A	124988211	3	1	275	1	0	0	0	0	1	0	0	0	5861	943	33	2	787	2	FER1L6	8	124988211	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	200767	124988211	21375811	2581	28268										
FER1L6	0	genome.wustl.edu	37	chr8	125078712	125078712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccactaagaggagaaagaGgaccatagcagatgaatctg	12	7	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	125078712	125078712	G	T	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.3599	p.R1200M	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	295	0	0	256	34	11.72	-	-	-	T	125078712	G	T	125078712	3	4	275	1	0	0	0	0	1	0	0	0	5861	1000	35	4	3701	4	FER1L6	8	125078712	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90501	125078712	21285310	2582	28269										
NDUFB9	0	genome.wustl.edu	37	chr8	125559267	125559267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatggtgcttagatgactgGcatccttctgagaaggcaat	12	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	125559267	125559267	G	T	SNP	NDUFB9	ENST00000276689	human	ensembl	69_37n	1	known	missense	c.321	p.W107C	1.000	NULL	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684	323	0	0	219	73	25	-	-	-	T	125559267	G	T	125559267	3	4	275	1	0	0	0	0	1	0	0	0	10360	1212	42	4	331	4	NDUFB9	8	125559267	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	480555	125559267	20804755	2583	28270										
SQLE	0	genome.wustl.edu	37	chr8	126015523	126015523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatcatcgtgggagctggcGtgcttggctctgctttggca	14	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	126015523	126015523	G	A	SNP	SQLE	ENST00000265896	human	ensembl	69_37n	1	known	missense	c.397	p.V133M	0.982	pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549	156	0	0	90	36	28.35	-	-	-	A	126015523	G	A	126015523	3	1	275	1	0	0	0	0	1	0	0	0	15219	1145	40	1	403	1	SQLE	8	126015523	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	456256	126015523	20348499	2584	28271										
KIAA0196	0	genome.wustl.edu	37	chr8	126075832	126075832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagctcagtcatccgctccGaaccctctttcttgtaatgc	6	15	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	126075832	126075832	G	A	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	missense	c.1340	p.S447L	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	684	0	0	450	141	23.78	-	-	-	A	126075832	G	A	126075832	3	1	275	1	0	0	0	0	1	0	0	0	8213	1059	37	1	2215	1	KIAA0196	8	126075832	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	60309	126075832	20288190	2585	28272										
NSMCE2	0	genome.wustl.edu	37	chr8	126379330	126379330	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgtttatttttaagtgttCtataatgttaaataaaactt	4	2	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	126379330	126379330	C	T	SNP	NSMCE2	ENST00000521460	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NSMCE2	HGNC	ENSG00000156831	20	0	0	14	4	22.22	-	-	-	T	126379330	C	T	126379330	1	4	275	0	1	0	0	0	0	0	0	0	10749	928	32	2		2	NSMCE2	8	126379330	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	303498	126379330	19984692	2586	28273										
OC90	0	genome.wustl.edu	37	chr8	133067261	133067261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcagcacactggtgaggaGaaacgcaatcatagcaggag	12	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	133067261	133067261	G	T	SNP	OC90	ENST00000443356	human	ensembl	69_37n	-1	known	missense	c.13	p.L5I	0.032	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	OC90	HGNC	ENSG00000253117	289	0	0	185	70	27.24	-	-	-	T	133067261	G	T	133067261	3	4	275	1	0	0	0	0	1	0	0	0	10887	942	33	2	1472	2	OC90	8	133067261	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6687931	133067261	13296761	2587	28274										
PHF20L1	0	genome.wustl.edu	37	chr8	133854960	133854960	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataacaagtgagcatagctAtcaaaagccacaaagttttg	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	133854960	133854960	A	G	SNP	PHF20L1	ENST00000220847	human	ensembl	69_37n	1	known	missense	c.749	p.Y250C	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	126	0	0	123	16	11.51	-	-	-	G	133854960	A	G	133854960	3	3	275	1	0	0	0	0	1	0	0	0	11906	449	16	5	2754	5	PHF20L1	8	133854960	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	787699	133854960	12509062	2588	28275										
TG	0	genome.wustl.edu	37	chr8	133895131	133895131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatgttccaagctgccgccGaaatggcgactatcaggcgg	12	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	133895131	133895131	G	A	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.962	p.R321Q	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	120	0	0	48	21	30	-	-	-	A	133895131	G	A	133895131	3	1	275	1	0	0	0	0	1	0	0	0	15908	1058	37	1	992	1	TG	8	133895131	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40171	133895131	12468891	2589	28276										
FAM135B	0	genome.wustl.edu	37	chr8	139164465	139164465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcctcaaaaggtaaagaGctaatggaggtgagagaagc	12	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	139164465	139164465	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	silent	c.2253	p.S751	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	56	0	0	67	12	15.19	-	-	-	A	139164465	G	A	139164465	2	1	275	1	0	0	0	0	0	0	0	1	5489	962	34	4		4	FAM135B	8	139164465	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5269334	139164465	7199557	2590	28277										
FAM135B	0	genome.wustl.edu	37	chr8	139164562	139164562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccggtggagggcatgtcttCgaacaaacgggtgcaagact	14	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	139164562	139164562	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.2156	p.R719Q	0.364	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	98	1	1	74	15	16.85	-	-	-	T	139164562	C	T	139164562	3	4	275	1	0	0	0	0	1	0	0	0	5489	884	31	1	2096	1	FAM135B	8	139164562	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97	139164562	7199460	2591	28278										
KCNK9	0	genome.wustl.edu	37	chr8	140630978	140630978	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggccacgtagagcggcttCttctgcagggcacccttggt	13	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	140630978	140630978	C	A	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.648	p.K216N	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	87	0	0	69	14	16.28	-	-	-	A	140630978	C	A	140630978	3	1	275	1	0	0	0	0	1	0	0	0	8126	912	32	2	480	2	KCNK9	8	140630978	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1466416	140630978	5733044	2592	28279										
PTK2	0	genome.wustl.edu	37	chr8	141829013	141829013	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagcattccttatcaaatCtgtagactggagacaggatc	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	141829013	141829013	C	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.755	p.R252I	1.000	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	913	0	0	489	163	25	-	-	-	A	141829013	C	A	141829013	3	1	275	1	0	0	0	0	1	0	0	0	12843	913	32	2	2499	2	PTK2	8	141829013	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1198035	141829013	4535009	2593	28280										
PSCA	0	genome.wustl.edu	37	chr8	143762930	143762930	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctggccatctgtccgcatCtgtgtgctgttttccttcca	8	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	143762930	143762930	C	A	SNP	PSCA	ENST00000505305	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSCA	HGNC	ENSG00000167653	17	0	0	6	8	57.14	-	-	-	A	143762930	C	A	143762930	1	1	275	0	1	0	0	0	0	0	0	0	12725	928	32	2		2	PSCA	8	143762930	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1933917	143762930	2601092	2594	28281										
LY6D	0	genome.wustl.edu	37	chr8	143867012	143867012	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgctacccacctgtgttCgtggtcttgcagaagcgaga	12	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	143867012	143867012	C	T	SNP	LY6D	ENST00000301263	human	ensembl	69_37n	-1	known	silent	c.144	p.T48	0.000	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6D	HGNC	ENSG00000167656	45	0	0	14	7	33.33	-	-	-	T	143867012	C	T	143867012	2	4	275	1	0	0	0	0	0	0	0	1	9157	871	31	1		1	LY6D	8	143867012	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	104082	143867012	2497010	2595	28282										
CYP11B1	0	genome.wustl.edu	37	chr8	143957200	143957200	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggggatgttcactgatgCtggctgcggcggccaggctc	16	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	143957200	143957200	C	A	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	missense	c.1049	p.S350I	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	147	0	0	55	12	17.91	-	-	-	A	143957200	C	A	143957200	3	1	275	1	0	0	0	0	1	0	0	0	4176	797	28	4	478	4	CYP11B1	8	143957200	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90188	143957200	2406822	2596	28283										
ZNF623	0	genome.wustl.edu	37	chr8	144733408	144733408	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accagattattcacactggaGaaaagccctatgtgtgcagt	9	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	144733408	144733408	G	T	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	nonsense	c.1366	p.E456*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	432	0	0	364	49	11.86	-	-	-	T	144733408	G	T	144733408	4	4	275	1	0	0	0	0	0	1	0	0	18143	943	33	2	1368	2	ZNF623	8	144733408	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	776208	144733408	1630614	2597	28284										
NRBP2	0	genome.wustl.edu	37	chr8	144919653	144919653	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtccatggccttggtcttCtcctccaccacattctcagg	8	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	144919653	144919653	C	A	SNP	NRBP2	ENST00000327830	human	ensembl	69_37n	-1	known	missense	c.273	p.E91D	0.990	superfamily_Kinase-like_dom	superfamily_Kinase-like_dom	-	no_errors	NRBP2	HGNC	ENSG00000185189	36	0	0	19	5	20.83	-	-	-	A	144919653	C	A	144919653	3	1	275	1	0	0	0	0	1	0	0	0	10716	912	32	2	531	2	NRBP2	8	144919653	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	186245	144919653	1444369	2598	28285										
ZNF251	0	genome.wustl.edu	37	chr8	145948569	145948569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaaactctcttgtgaataTtgggtttgttcaaactctgc	7	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	145948569	145948569	T	C	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	missense	c.476	p.N159S	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	90	0	0	65	13	16.67	-	-	-	C	145948569	T	C	145948569	3	2	275	1	0	0	0	0	1	0	0	0	17892	1493	52	5	1543	5	ZNF251	8	145948569	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1028916	145948569	415453	2599	28286										
ZNF34	0	genome.wustl.edu	37	chr8	145998981	145998981	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctgaaaactttgccacaGtcattgcattcatagggctt	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	145998981	145998981	G	A	SNP	ZNF34	ENST00000343459	human	ensembl	69_37n	-1	known	silent	c.1353	p.D451	0.134	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378	150	0	0	113	41	26.28	-	-	-	A	145998981	G	A	145998981	2	1	275	1	0	0	0	0	0	0	0	1	17952	1020	36	4		4	ZNF34	8	145998981	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	50412	145998981	365041	2600	28287										
ZNF7	0	genome.wustl.edu	37	chr8	146067243	146067243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccatggagagaagccgtacGaatgtgcagagtgtgggaaa	16	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	146067243	146067243	G	A	SNP	ZNF7	ENST00000325241	human	ensembl	69_37n	1	known	missense	c.751	p.E251K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789	31	0	0	45	6	11.76	-	-	-	A	146067243	G	A	146067243	3	1	275	1	0	0	0	0	1	0	0	0	18198	1059	37	1	765	1	ZNF7	8	146067243	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68262	146067243	296779	2601	28288										
ZNF7	0	genome.wustl.edu	37	chr8	146067401	146067401	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagaatccacactggggaGaagccctacagatgtgagga	12	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	8	146067401	146067401	G	A	SNP	ZNF7	ENST00000325241	human	ensembl	69_37n	1	known	silent	c.909	p.E303	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789	73	0	0	81	12	12.77	-	-	-	A	146067401	G	A	146067401	2	1	275	1	0	0	0	0	0	0	0	1	18198	933	33	2		2	ZNF7	8	146067401	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158	146067401	296621	2602	28289										
DOCK8	0	genome.wustl.edu	37	chr9	377198	377198	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgtgcagcccatggtcatCgctggccagacaggtatgaa	12	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	377198	377198	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	silent	c.2427	p.I809	0.303	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	46	0	0	32	6	15.79	-	-	-	T	377198	C	T	377198	2	4	275	1	0	0	0	0	0	0	0	1	4728	874	31	1		1	DOCK8	9	377198	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09		377198	140836233	2603	28290										
DOCK8	0	genome.wustl.edu	37	chr9	405080	405080	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatatcttcccaggtaataAaagaattatttaactaaaag	4	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	405080	405080	A	T	SNP	DOCK8	ENST00000382331	human	ensembl	69_37n	1	putative	nonsense	c.1303	p.K435*	0.083	NULL	NULL	-	no_errors	DOCK8	HGNC	ENSG00000107099	63	0	0	88	11	11.11	-	-	-	T	405080	A	T	405080	4	4	275	1	0	0	0	0	0	1	0	0	4728	29	1	5		5	DOCK8	9	405080	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	27882	405080	140808351	2604	28291										
DOCK8	0	genome.wustl.edu	37	chr9	420474	420474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcttcctctggatcatgaAaaatgctgatcagagcctca	8	11	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	420474	420474	A	C	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.3914	p.K1305T	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	136	0	0	101	41	28.87	-	-	-	C	420474	A	C	420474	3	2	275	1	0	0	0	0	1	0	0	0	4728	14	1	5	4036	5	DOCK8	9	420474	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	15394	420474	140792957	2605	28292										
KANK1	0	genome.wustl.edu	37	chr9	730108	730108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagtcaggaagtcccttaaGctcccagacatcccagcctg	8	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	730108	730108	G	T	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	missense	c.2756	p.S919I	0.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	159	0	0	105	39	27.08	-	-	-	T	730108	G	T	730108	3	4	275	1	0	0	0	0	1	0	0	0	8030	971	34	4	2766	4	KANK1	9	730108	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	309634	730108	140483323	2606	28293										
DMRT2	0	genome.wustl.edu	37	chr9	1056555	1056555	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggaatatggaactaatttCttctaatgtcagcgtggcca	10	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	1056555	1056555	C	A	SNP	DMRT2	ENST00000302441	human	ensembl	69_37n	1	known	missense	c.968	p.S323Y	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	185	0	0	120	14	10.45	-	-	-	A	1056555	C	A	1056555	3	1	275	1	0	0	0	0	1	0	0	0	4622	913	32	2	1035	2	DMRT2	9	1056555	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	326447	1056555	140156876	2607	28294										
SMARCA2	0	genome.wustl.edu	37	chr9	2110343	2110343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttgctgagcacaagaGctggtggcctgggcttaaat	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	2110343	2110343	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.3382	p.A1128T	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	145	0	0	117	26	18.18	-	-	-	A	2110343	G	A	2110343	3	1	275	1	0	0	0	0	1	0	0	0	14858	971	34	4	3472	4	SMARCA2	9	2110343	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1053788	2110343	139103088	2608	28295										
VLDLR	0	genome.wustl.edu	37	chr9	2643634	2643634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccctttgtagcctctcGaacttgccgacctgaccaat	6	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	2643634	2643634	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.827	p.R276Q	1.000	superfamily_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	178	0	0	154	24	13.48	-	-	-	A	2643634	G	A	2643634	3	1	275	1	0	0	0	0	1	0	0	0	17271	1058	37	1	849	1	VLDLR	9	2643634	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	533291	2643634	138569797	2609	28296										
VLDLR	0	genome.wustl.edu	37	chr9	2646516	2646516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgtttaactctgacttgcGagagcctgcctccatagctg	9	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	2646516	2646516	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.1667	p.R556Q	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	181	1	0.55	119	32	21.19	-	-	-	A	2646516	G	A	2646516	3	1	275	1	0	0	0	0	1	0	0	0	17271	1058	37	1	1709	1	VLDLR	9	2646516	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2882	2646516	138566915	2610	28297										
KIAA0020	0	genome.wustl.edu	37	chr9	2830995	2830995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcttaacaatatttctcGaatatttggctttacttaac	3	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	2830995	2830995	G	A	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.644	p.S215L	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	118	0	0	77	14	15.38	-	-	-	A	2830995	G	A	2830995	3	1	275	1	0	0	0	0	1	0	0	0	8204	1059	37	1	1350	1	KIAA0020	9	2830995	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184479	2830995	138382436	2611	28298										
RFX3	0	genome.wustl.edu	37	chr9	3263050	3263050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattaagcgacgtgtatcttCgcagagtctgggcaaaggca	13	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	3263050	3263050	C	T	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	missense	c.1490	p.R497Q	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	278	0	0	142	29	16.96	-	-	-	T	3263050	C	T	3263050	3	4	275	1	0	0	0	0	1	0	0	0	13347	884	31	1	935	1	RFX3	9	3263050	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	432055	3263050	137950381	2612	28299										
INSL6	0	genome.wustl.edu	37	chr9	5185437	5185437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagaaaggggtttcctcctCgaaacggaactggctccagt	12	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	5185437	5185437	C	T	SNP	INSL6	ENST00000381641	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	0.000	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,pirsf_Insulin-like_pep_6	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,pirsf_Insulin-like_pep_6	-	no_errors	INSL6	HGNC	ENSG00000120210	164	0	0	89	13	12.75	-	-	-	T	5185437	C	T	5185437	3	4	275	1	0	0	0	0	1	0	0	0	7824	893	31	1	483	1	INSL6	9	5185437	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1922387	5185437	136027994	2613	28300										
CD274	0	genome.wustl.edu	37	chr9	5463032	5463032	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgtgaccagcacactgaGaatcaacacaacaactaatg	6	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	5463032	5463032	G	T	SNP	CD274	ENST00000381577	human	ensembl	69_37n	1	known	missense	c.593	p.R198I	0.286	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD274	HGNC	ENSG00000120217	275	0	0	204	36	15	-	-	-	T	5463032	G	T	5463032	3	4	275	1	0	0	0	0	1	0	0	0	3020	942	33	2	603	2	CD274	9	5463032	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	277595	5463032	135750399	2614	28301										
KIAA1432	0	genome.wustl.edu	37	chr9	5765498	5765498	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcaagtgggacctttgtCgacacatgattcgatttctt	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	5765498	5765498	C	T	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	nonsense	c.2689	p.R897*	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	496	0	0	298	116	28.02	-	-	-	T	5765498	C	T	5765498	4	4	275	1	0	0	0	0	0	1	0	0	8285	876	31	1	2763	1	KIAA1432	9	5765498	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	302466	5765498	135447933	2615	28302										
RANBP6	0	genome.wustl.edu	37	chr9	6013269	6013269	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcaatggactttgcaaaaGaattcattatttctgagagc	7	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	6013269	6013269	G	T	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.2339	p.S780Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	43	0	0	29	5	14.71	-	-	-	T	6013269	G	T	6013269	3	4	275	1	0	0	0	0	1	0	0	0	13114	942	33	2	982	2	RANBP6	9	6013269	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	247771	6013269	135200162	2616	28303										
RANBP6	0	genome.wustl.edu	37	chr9	6013702	6013702	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcagtcttaataagaggctCgataaccagtggaaggtact	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	6013702	6013702	C	T	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.1906	p.E636K	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	44	0	0	34	5	12.82	-	-	-	T	6013702	C	T	6013702	3	4	275	1	0	0	0	0	1	0	0	0	13114	893	31	1	1415	1	RANBP6	9	6013702	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	433	6013702	135199729	2617	28304										
GLDC	0	genome.wustl.edu	37	chr9	6553491	6553491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgggatgattgggcaaaaaCggggcgagatgtttcttcct	14	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	6553491	6553491	C	T	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	silent	c.2334	p.P778	0.984	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	538	0	0	444	60	11.83	-	-	-	T	6553491	C	T	6553491	2	4	275	1	0	0	0	0	0	0	0	1	6485	523	19	1		1	GLDC	9	6553491	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	539789	6553491	134659940	2618	28305										
KDM4C	0	genome.wustl.edu	37	chr9	7103847	7103847	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtgaacattacatgctttCgacataaggtcaaccccaac	7	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	7103847	7103847	C	T	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	nonsense	c.2587	p.R863*	1.000	smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	263	0	0	160	57	26.27	-	-	-	T	7103847	C	T	7103847	4	4	275	1	0	0	0	0	0	1	0	0	8184	876	31	1	2745	1	KDM4C	9	7103847	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	550356	7103847	134109584	2619	28306										
PTPRD	0	genome.wustl.edu	37	chr9	8486198	8486198	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgatcttctttttcagaGaactcaagagtagtaagtgg	10	5	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	8486198	8486198	G	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.2619	p.F873L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	160	0	0	125	21	14.38	-	-	-	T	8486198	G	T	8486198	3	4	275	1	0	0	0	0	1	0	0	0	12882	933	33	2	3263	2	PTPRD	9	8486198	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1382351	8486198	132727233	2620	28307										
TYRP1	0	genome.wustl.edu	37	chr9	12702374	12702374	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcgctcagtgcttggaagtTggtttatttgacacgcctcc	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	12702374	12702374	T	G	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	silent	c.1017	p.V339	0.433	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	397	0	0	287	35	10.87	-	-	-	G	12702374	T	G	12702374	2	3	275	1	0	0	0	0	0	0	0	1	16913	1799	63	5		5	TYRP1	9	12702374	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4216176	12702374	128511057	2621	28308										
MPDZ	0	genome.wustl.edu	37	chr9	13109041	13109041	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctcgctctagtgtaataGacttacattgaggaggtcta	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	13109041	13109041	G	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.5960	p.S1987Y	1.000	superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	118	0	0	79	30	27.52	-	-	-	T	13109041	G	T	13109041	3	4	275	1	0	0	0	0	1	0	0	0	9794	942	33	2	260	2	MPDZ	9	13109041	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406667	13109041	128104390	2622	28309										
MPDZ	0	genome.wustl.edu	37	chr9	13150579	13150579	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatcttccagaacatgtttGatgaaaatgcccctcatcac	5	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	13150579	13150579	G	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	silent	c.3561	p.I1187	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	280	0	0	160	25	13.37	-	-	-	T	13150579	G	T	13150579	2	4	275	1	0	0	0	0	0	0	0	1	9794	1280	45	2		2	MPDZ	9	13150579	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41538	13150579	128062852	2623	28310										
ZDHHC21	0	genome.wustl.edu	37	chr9	14639978	14639978	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaaggctgctagtctcatTatggccaattcatgtctaaa	7	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	14639978	14639978	T	G	SNP	ZDHHC21	ENST00000380916	human	ensembl	69_37n	-1	known	silent	c.537	p.I179	0.936	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC21	HGNC	ENSG00000175893	460	0	0	375	48	11.35	-	-	-	G	14639978	T	G	14639978	2	3	275	1	0	0	0	0	0	0	0	1	17708	1761	61	5		5	ZDHHC21	9	14639978	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1489399	14639978	126573453	2624	28311										
FREM1	0	genome.wustl.edu	37	chr9	14746971	14746971	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcccattgcactgatacaGcttctggatgccttcttcaa	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	14746971	14746971	G	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.6091	p.L2031	0.557	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	96	0	0	64	23	26.44	-	-	-	A	14746971	G	A	14746971	2	1	275	1	0	0	0	0	0	0	0	1	6093	962	34	4		4	FREM1	9	14746971	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106993	14746971	126466460	2625	28312										
FREM1	0	genome.wustl.edu	37	chr9	14747683	14747683	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgactacacttacattaTagatgatgtctgttccattt	6	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	14747683	14747683	T	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.5843	p.Y1948C	0.997	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	102	0	0	109	19	14.84	-	-	-	C	14747683	T	C	14747683	3	2	275	1	0	0	0	0	1	0	0	0	6093	1406	49	5	723	5	FREM1	9	14747683	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	712	14747683	126465748	2626	28313										
TTC39B	0	genome.wustl.edu	37	chr9	15211308	15211308	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatggcagaaatgccgttCtggatgtcctgttgctcgaa	11	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	15211308	15211308	C	A	SNP	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	missense	c.570	p.Q190H	0.041	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	143	0	0	118	23	16.31	-	-	-	A	15211308	C	A	15211308	3	1	275	1	0	0	0	0	1	0	0	0	16805	912	32	2	1563	2	TTC39B	9	15211308	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	463625	15211308	126002123	2627	28314										
CNTLN	0	genome.wustl.edu	37	chr9	17342375	17342375	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaacaacttcgacaagaaGattctgacgctgtgtggaat	9	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	17342375	17342375	G	T	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.1819	p.D607Y	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	212	0	0	139	22	13.66	-	-	-	T	17342375	G	T	17342375	3	4	275	1	0	0	0	0	1	0	0	0	3669	942	33	2	1895	2	CNTLN	9	17342375	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2131067	17342375	123871056	2628	28315										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18574313	18574313	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtccagagggtttcaatgtCtttgtgtaaatggtttacat	10	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	18574313	18574313	C	A	SNP	ADAMTSL1	ENST00000431052	human	ensembl	69_37n	1	putative	missense	c.523	p.L175I	0.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	53	0	0	30	20	40	-	-	-	A	18574313	C	A	18574313	3	1	275	1	0	0	0	0	1	0	0	0	274	928	32	2		2	ADAMTSL1	9	18574313	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1231938	18574313	122639118	2629	28316										
HAUS6	0	genome.wustl.edu	37	chr9	19096723	19096723	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacttgaaacaaaaaataaGaaattatatgaaaggcatca	6	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	19096723	19096723	G	T	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.173	p.S58Y	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	112	0	0	69	8	10.39	-	-	-	T	19096723	G	T	19096723	3	4	275	1	0	0	0	0	1	0	0	0	7021	942	33	2	2758	2	HAUS6	9	19096723	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	522410	19096723	122116708	2630	28317										
PLIN2	0	genome.wustl.edu	37	chr9	19120944	19120944	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatttggtgagtgcattttCtacgccactgctcacgagct	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	19120944	19120944	C	A	SNP	PLIN2	ENST00000276914	human	ensembl	69_37n	-1	known	nonsense	c.529	p.E177*	1.000	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872	95	0	0	68	11	13.92	-	-	-	A	19120944	C	A	19120944	4	1	275	1	0	0	0	0	0	1	0	0	12164	922	32	2	800	2	PLIN2	9	19120944	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24221	19120944	122092487	2631	28318										
DENND4C	0	genome.wustl.edu	37	chr9	19324380	19324380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatttttaaaaagtcgagatCgtgcctatgcaaaattctat	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	19324380	19324380	C	T	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.1120	p.R374C	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	184	0	0	102	30	22.73	-	-	-	T	19324380	C	T	19324380	3	4	275	1	0	0	0	0	1	0	0	0	4471	884	31	1	1154	1	DENND4C	9	19324380	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	203436	19324380	121889051	2632	28319										
DENND4C	0	genome.wustl.edu	37	chr9	19346106	19346106	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagagtagtttggattcGaattcaagtgaaatggctat	11	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	19346106	19346106	G	A	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	silent	c.2484	p.S828	0.963	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	212	1	0.47	120	17	12.41	-	-	-	A	19346106	G	A	19346106	2	1	275	1	0	0	0	0	0	0	0	1	4471	1045	37	1		1	DENND4C	9	19346106	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21726	19346106	121867325	2633	28320										
KLHL9	0	genome.wustl.edu	37	chr9	21334138	21334138	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtgtcatcagtggaaatcGaatattcttcattaactttg	8	6	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	21334138	21334138	G	A	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	nonsense	c.721	p.R241*	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	147	0	0	63	15	19.23	-	-	-	A	21334138	G	A	21334138	4	1	275	1	0	0	0	0	0	1	0	0	8449	1066	37	1	1136	1	KLHL9	9	21334138	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1988032	21334138	119879293	2634	28321										
KLHL9	0	genome.wustl.edu	37	chr9	21334225	21334225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccttaaagagttcaagttCggtacagtgcttaagactat	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	21334225	21334225	C	T	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	missense	c.634	p.E212K	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	75	0	0	36	10	21.74	-	-	-	T	21334225	C	T	21334225	3	4	275	1	0	0	0	0	1	0	0	0	8449	893	31	1	1223	1	KLHL9	9	21334225	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	87	21334225	119879206	2635	28322										
KLHL9	0	genome.wustl.edu	37	chr9	21334269	21334269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaagcacaaatgcaagtCgttcaaaagggagttttaga	11	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	21334269	21334269	C	T	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	missense	c.590	p.R197Q	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	67	0	0	26	7	21.21	-	-	-	T	21334269	C	T	21334269	3	4	275	1	0	0	0	0	1	0	0	0	8449	884	31	1	1267	1	KLHL9	9	21334269	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44	21334269	119879162	2636	28323										
LRRC19	0	genome.wustl.edu	37	chr9	26996331	26996331	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatttcttgttaagttgttCgaagagctattaaatattga	8	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	26996331	26996331	C	T	SNP	LRRC19	ENST00000380055	human	ensembl	69_37n	-1	known	silent	c.762	p.S254	0.015	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC19	HGNC	ENSG00000184434	119	0	0	73	12	14.12	-	-	-	T	26996331	C	T	26996331	2	4	275	1	0	0	0	0	0	0	0	1	9041	871	31	1		1	LRRC19	9	26996331	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5662062	26996331	114217100	2637	28324										
TEK	0	genome.wustl.edu	37	chr9	27190671	27190671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccgttaatcactatgaggCttggcaacatattcaaggta	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	27190671	27190671	C	T	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.1472	p.A491V	0.925	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	249	0	0	159	49	23.56	-	-	-	T	27190671	C	T	27190671	3	4	275	1	0	0	0	0	1	0	0	0	15846	797	28	4	1510	4	TEK	9	27190671	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	194340	27190671	114022760	2638	28325										
TEK	0	genome.wustl.edu	37	chr9	27202846	27202846	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaaccagaaaacatcaaGatttccaacattacacactc	2	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	27202846	27202846	G	T	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.1938	p.K646N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	413	1	0.24	332	52	13.54	-	-	-	T	27202846	G	T	27202846	3	4	275	1	0	0	0	0	1	0	0	0	15846	933	33	2	1988	2	TEK	9	27202846	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12175	27202846	114010585	2639	28326										
TEK	0	genome.wustl.edu	37	chr9	27209184	27209184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttctttgtaaacttggaCaccatccaaacatcatcaat	4	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	27209184	27209184	C	T	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.2641	p.H881Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	209	0	0	201	46	18.62	-	-	-	T	27209184	C	T	27209184	3	4	275	1	0	0	0	0	1	0	0	0	15846	478	17	4	2703	4	TEK	9	27209184	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6338	27209184	114004247	2640	28327										
C9orf11	0	genome.wustl.edu	37	chr9	27294414	27294414	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacacatctaaaaacaaaagCgaaagtcttcagcaactagc	5	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	27294414	27294414	C	T	SNP	C9orf11	ENST00000484994	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf11	HGNC	ENSG00000120160	238	0	0	187	27	12.62	-	-	-	T	27294414	C	T	27294414	1	4	275	0	1	0	0	0	0	0	0	0	2473	783	27	1		1	C9orf11	9	27294414	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85230	27294414	113919017	2641	28328										
LINGO2	0	genome.wustl.edu	37	chr9	27949965	27949965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcatcatatccagtaaaggCcaatagtcaatctctaggtg	9	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	27949965	27949965	C	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.705	p.W235C	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	257	0	0	155	70	31.11	-	-	-	A	27949965	C	A	27949965	3	1	275	1	0	0	0	0	1	0	0	0	8871	740	26	4	1119	4	LINGO2	9	27949965	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	655551	27949965	113263466	2642	28329										
TOPORS	0	genome.wustl.edu	37	chr9	32542676	32542676	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttcccatgatgctttCtatgattcttctgatcatgc	5	10	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	32542676	32542676	C	T	SNP	TOPORS	ENST00000360538	human	ensembl	69_37n	-1	known	missense	c.1847	p.R616K	0.983	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579	238	0	0	176	21	10.66	-	-	-	T	32542676	C	T	32542676	3	4	275	1	0	0	0	0	1	0	0	0	16466	913	32	2	1294	2	TOPORS	9	32542676	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4592711	32542676	108670755	2643	28330										
TAF1L	0	genome.wustl.edu	37	chr9	32632166	32632166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctgctcctcccattcacGtgacagctgagagctggttt	9	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	32632166	32632166	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3412	p.R1138C	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	411	1	0.24	342	112	24.56	-	-	-	A	32632166	G	A	32632166	3	1	275	1	0	0	0	0	1	0	0	0	15615	1145	40	1	2072	1	TAF1L	9	32632166	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	89490	32632166	108581265	2644	28331										
TAF1L	0	genome.wustl.edu	37	chr9	32633360	32633360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatggcagtaaacagtttCcccatatttacaatctggtg	8	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	32633360	32633360	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2218	p.E740K	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	416	1	0.24	311	108	25.65	-	-	-	T	32633360	C	T	32633360	3	4	275	1	0	0	0	0	1	0	0	0	15615	864	30	2	3266	2	TAF1L	9	32633360	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1194	32633360	108580071	2645	28332										
TAF1L	0	genome.wustl.edu	37	chr9	32633383	32633383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catatttacaatctggtgctCcaggatctttgccaggtttc	8	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	32633383	32633383	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2195	p.G732E	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	365	0	0	338	39	10.24	-	-	-	T	32633383	C	T	32633383	3	4	275	1	0	0	0	0	1	0	0	0	15615	855	30	2	3289	2	TAF1L	9	32633383	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23	32633383	108580048	2646	28333										
TAF1L	0	genome.wustl.edu	37	chr9	32635410	32635410	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttacactcatcatccaaGacgctttccccctccagctg	4	17	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	32635410	32635410	G	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.168	p.V56	0.999	pirsf_TAF1_animal,pfam_TAF_II_230-bd,superfamily_TAF_II_230-bd	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	154	0	0	136	27	16.56	-	-	-	T	32635410	G	T	32635410	2	4	275	1	0	0	0	0	0	0	0	1	15615	929	33	2		2	TAF1L	9	32635410	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2027	32635410	108578021	2647	28334										
DCAF12	0	genome.wustl.edu	37	chr9	34093425	34093425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacacattctcacggcaatAtggcagtttggtggagagga	12	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	34093425	34093425	A	G	SNP	DCAF12	ENST00000361264	human	ensembl	69_37n	-1	known	missense	c.883	p.Y295H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	161	1	0.62	124	18	12.68	-	-	-	G	34093425	A	G	34093425	3	3	275	1	0	0	0	0	1	0	0	0	4295	449	16	5	490	5	DCAF12	9	34093425	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1458015	34093425	107120006	2648	28335										
KIF24	0	genome.wustl.edu	37	chr9	34306378	34306378	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgcccagggggcgttttcGaacacaaactctgattttct	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	34306378	34306378	G	A	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	nonsense	c.685	p.R229*	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	228	0	0	127	25	16.45	-	-	-	A	34306378	G	A	34306378	4	1	275	1	0	0	0	0	0	1	0	0	8344	1066	37	1	3465	1	KIF24	9	34306378	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	212953	34306378	106907053	2649	28336										
C9orf24	0	genome.wustl.edu	37	chr9	34381418	34381418	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcattccaagggcattcctcGaactgctgtctccatcctgg	9	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	34381418	34381418	G	A	SNP	C9orf24	ENST00000297623	human	ensembl	69_37n	-1	known	nonsense	c.421	p.R141*	0.981	NULL	NULL	-	no_errors	C9orf24	HGNC	ENSG00000164972	98	0	0	42	9	17.65	-	-	-	A	34381418	G	A	34381418	4	1	275	1	0	0	0	0	0	1	0	0	2500	1066	37	1	489	1	C9orf24	9	34381418	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75040	34381418	106832013	2650	28337										
CCL19	0	genome.wustl.edu	37	chr9	34689962	34689962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcagtctctggatgatgcGttctacccagggctggtctg	13	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	34689962	34689962	G	A	SNP	CCL19	ENST00000378800	human	ensembl	69_37n	-1	known	missense	c.241	p.R81C	0.945	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL19	HGNC	ENSG00000172724	171	0	0	170	22	11.46	-	-	-	A	34689962	G	A	34689962	3	1	275	1	0	0	0	0	1	0	0	0	2917	1145	40	1	63	1	CCL19	9	34689962	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	308544	34689962	106523469	2651	28338										
DNAJB5	0	genome.wustl.edu	37	chr9	34990775	34990775	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctggagcccttaaaacttCgagcgtggacgctgaatggg	14	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	34990775	34990775	C	T	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	1	known	nonsense	c.148	p.R50*	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	105	0	0	68	11	13.92	-	-	-	T	34990775	C	T	34990775	4	4	275	1	0	0	0	0	0	1	0	0	4658	876	31	1	150	1	DNAJB5	9	34990775	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	300813	34990775	106222656	2652	28339										
PIGO	0	genome.wustl.edu	37	chr9	35092806	35092806	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaaggggaacaggtcagaGacataaattggggcagaggc	16	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	35092806	35092806	G	T	SNP	PIGO	ENST00000465745	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	PIGO	HGNC	ENSG00000165282	56	0	0	22	26	54.17	-	-	-	T	35092806	G	T	35092806	1	4	275	0	1	0	0	0	0	0	0	0	11968	957	33	2		2	PIGO	9	35092806	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	102031	35092806	106120625	2653	28340										
TPM2	0	genome.wustl.edu	37	chr9	35685746	35685746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcctcaaccagctgaatgCggcggttcagggaggccaca	12	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	35685746	35685746	C	T	SNP	TPM2	ENST00000378300	human	ensembl	69_37n	-1	known	missense	c.272	p.R91H	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467	54	0	0	37	14	26.42	-	-	-	T	35685746	C	T	35685746	3	4	275	1	0	0	0	0	1	0	0	0	16502	768	27	1	777	1	TPM2	9	35685746	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	592940	35685746	105527685	2654	28341										
MSMP	0	genome.wustl.edu	37	chr9	35753261	35753261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacacccagccgggaagtCgatgggatgctgggacctgg	15	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	35753261	35753261	C	T	SNP	MSMP	ENST00000436428	human	ensembl	69_37n	-1	known	missense	c.256	p.D86N	1.000	pfam_PSP94	pfam_PSP94	-	no_errors	MSMP	HGNC	ENSG00000215183	101	0	0	60	11	15.28	-	-	-	T	35753261	C	T	35753261	3	4	275	1	0	0	0	0	1	0	0	0	9956	884	31	1	167	1	MSMP	9	35753261	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	67515	35753261	105460170	2655	28342										
NPR2	0	genome.wustl.edu	37	chr9	35800119	35800119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacccgggaggatggacttcGaattgtggaaaagatgcagg	15	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	35800119	35800119	G	A	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.1088	p.R363Q	0.997	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	676	1	0.15	515	85	14.14	-	-	-	A	35800119	G	A	35800119	3	1	275	1	0	0	0	0	1	0	0	0	10668	1058	37	1	1102	1	NPR2	9	35800119	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46858	35800119	105413312	2656	28343										
TMEM8B	0	genome.wustl.edu	37	chr9	35846020	35846020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttggatgcttgactcacGaggtgcccttgagcctgggg	15	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	35846020	35846020	G	A	SNP	TMEM8B	ENST00000377988	human	ensembl	69_37n	1	known	missense	c.328	p.E110K	1.000	NULL	pfam_DUF3522	-	no_errors	TMEM8B	HGNC	ENSG00000137103	150	0	0	76	19	20	-	-	-	A	35846020	G	A	35846020	3	1	275	1	0	0	0	0	1	0	0	0	16310	1059	37	1	334	1	TMEM8B	9	35846020	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45901	35846020	105367411	2657	28344										
GLIPR2	0	genome.wustl.edu	37	chr9	36162557	36162557	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggtggcagacttaagaaCgtggatatgaagtgcctaga	14	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	36162557	36162557	C	T	SNP	GLIPR2	ENST00000474050	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLIPR2	HGNC	ENSG00000122694	246	0	0	183	64	25.91	-	-	-	T	36162557	C	T	36162557	1	4	275	0	1	0	0	0	0	0	0	0	6496	551	19	1		1	GLIPR2	9	36162557	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	316537	36162557	105050874	2658	28345										
GNE	0	genome.wustl.edu	37	chr9	36234070	36234070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggacgtgtttaactgcacGaaagttgggatgatgctcaa	13	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	36234070	36234070	G	A	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.922	p.R308C	1.000	pfam_UDP_GlcNAc_Epimerase_2,tigrfam_UDP-GlcNAc_Epase	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	203	0	0	188	26	12.15	-	-	-	A	36234070	G	A	36234070	3	1	275	1	0	0	0	0	1	0	0	0	6574	1058	37	1	1371	1	GNE	9	36234070	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71513	36234070	104979361	2659	28346										
MELK	0	genome.wustl.edu	37	chr9	36643024	36643024	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgatgatgattgcgtaacaGaactttctgtacatcacaga	8	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	36643024	36643024	G	T	SNP	MELK	ENST00000298048	human	ensembl	69_37n	1	known	nonsense	c.865	p.E289*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304	131	0	0	109	28	20.44	-	-	-	T	36643024	G	T	36643024	4	4	275	1	0	0	0	0	0	1	0	0	9541	943	33	2	903	2	MELK	9	36643024	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	408954	36643024	104570407	2660	28347										
ZCCHC7	0	genome.wustl.edu	37	chr9	37327810	37327810	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccaggcttgcacagaaatCtggaggcagtatcacctaac	9	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	37327810	37327810	C	A	SNP	ZCCHC7	ENST00000336755	human	ensembl	69_37n	1	known	silent	c.966	p.I322	1.000	superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905	489	0	0	405	47	10.4	-	-	-	A	37327810	C	A	37327810	2	1	275	1	0	0	0	0	0	0	0	1	17689	903	32	2		2	ZCCHC7	9	37327810	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	684786	37327810	103885621	2661	28348										
ZBTB5	0	genome.wustl.edu	37	chr9	37441802	37441802	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatcttcctggttatcagtCattccatcagctttaggatt	6	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	37441802	37441802	C	A	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.747	p.M249I	0.024	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	45	0	0	40	6	13.04	-	-	-	A	37441802	C	A	37441802	3	1	275	1	0	0	0	0	1	0	0	0	17647	826	29	2	1290	2	ZBTB5	9	37441802	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	113992	37441802	103771629	2662	28349										
FRMPD1	0	genome.wustl.edu	37	chr9	37729762	37729762	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggagaagctgtccatccGaagtatcgagtactttgcac	11	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	37729762	37729762	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.650	p.R217Q	0.997	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	194	0	0	154	40	20.62	-	-	-	A	37729762	G	A	37729762	3	1	275	1	0	0	0	0	1	0	0	0	6106	1058	37	1	676	1	FRMPD1	9	37729762	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	287960	37729762	103483669	2663	28350										
CNTNAP3	0	genome.wustl.edu	37	chr9	39088594	39088594	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcacttaaagtgtaatgttCttgaaaatggtatgtcattg	8	4	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	39088594	39088594	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.3046	p.E1016K	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	125	0	0	76	12	13.64	-	-	-	T	39088594	C	T	39088594	3	4	275	1	0	0	0	0	1	0	0	0	3678	922	32	2	844	2	CNTNAP3	9	39088594	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1358832	39088594	102124837	2664	28351										
FAM122A	0	genome.wustl.edu	37	chr9	71395691	71395691	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcttggaccattgaaaaGaaaatgtgaaatggaaactg	10	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	71395691	71395691	G	T	SNP	FAM122A	ENST00000394264	human	ensembl	69_37n	1	known	missense	c.611	p.R204I	1.000	NULL	NULL	-	no_errors	FAM122A	HGNC	ENSG00000187866	118	0	0	76	13	14.61	-	-	-	T	71395691	G	T	71395691	3	4	275	1	0	0	0	0	1	0	0	0	5459	942	33	2	613	2	FAM122A	9	71395691	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32307097	71395691	69817740	2665	28352										
FAM189A2	0	genome.wustl.edu	37	chr9	71992582	71992582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatggacgcatccccgaccCtgatgattttgtgccgcctg	10	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	71992582	71992582	C	T	SNP	FAM189A2	ENST00000257515	human	ensembl	69_37n	1	known	missense	c.416	p.P139L	0.998	NULL	pfam_CD20-like	-	no_errors	FAM189A2	HGNC	ENSG00000135063	470	0	0	300	106	26.04	-	-	-	T	71992582	C	T	71992582	3	4	275	1	0	0	0	0	1	0	0	0	5558	681	24	4	434	4	FAM189A2	9	71992582	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	596891	71992582	69220849	2666	28353										
APBA1	0	genome.wustl.edu	37	chr9	72064697	72064697	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctaggatttctcctttctGcttctctatgaaaacctgga	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	72064697	72064697	G	A	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	nonsense	c.1984	p.Q662*	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	90	0	0	63	13	17.11	-	-	-	A	72064697	G	A	72064697	4	1	275	1	0	0	0	0	0	1	0	0	757	1328	46	4	545	4	APBA1	9	72064697	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72115	72064697	69148734	2667	28354										
SMC5	0	genome.wustl.edu	37	chr9	72965054	72965054	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attatgataaatatggaattCgaattagagtcaaatttcga	7	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	72965054	72965054	C	T	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	nonsense	c.2914	p.R972*	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	138	0	0	102	23	18.4	-	-	-	T	72965054	C	T	72965054	4	4	275	1	0	0	0	0	0	1	0	0	14875	876	31	1	3004	1	SMC5	9	72965054	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	900357	72965054	68248377	2668	28355										
TRPM3	0	genome.wustl.edu	37	chr9	73213506	73213506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagaaaacagaaggatggcGatgaggtccgtgacattcca	12	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	73213506	73213506	G	A	SNP	TRPM3	ENST00000396280	human	ensembl	69_37n	-1	known	missense	c.2386	p.R796C	0.853	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPM3	HGNC	ENSG00000083067	123	0	0	91	30	24.19	-	-	-	A	73213506	G	A	73213506	3	1	275	1	0	0	0	0	1	0	0	0	16683	1048	37	1	2306	1	TRPM3	9	73213506	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248452	73213506	67999925	2669	28356										
TRPM3	0	genome.wustl.edu	37	chr9	73457896	73457896	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctaggagaagtcatggaAagcgacagcactcaggactt	11	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	73457896	73457896	A	C	SNP	TRPM3	ENST00000377097	human	ensembl	69_37n	-1	putative	missense	c.493	p.F165V	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPM3	HGNC	ENSG00000083067	112	0	0	79	15	15.96	-	-	-	C	73457896	A	C	73457896	3	2	275	1	0	0	0	0	1	0	0	0	16683	29	1	5		5	TRPM3	9	73457896	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	244390	73457896	67755535	2670	28357										
TMEM2	0	genome.wustl.edu	37	chr9	74315578	74315578	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgtgctggagtcaaaataGaatttcctctcggattgctt	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	74315578	74315578	G	T	SNP	TMEM2	ENST00000377044	human	ensembl	69_37n	-1	known	missense	c.3357	p.F1119L	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	275	0	0	210	34	13.93	-	-	-	T	74315578	G	T	74315578	3	4	275	1	0	0	0	0	1	0	0	0	16216	933	33	2	818	2	TMEM2	9	74315578	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	857682	74315578	66897853	2671	28358										
TMEM2	0	genome.wustl.edu	37	chr9	74340596	74340596	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggattccccagttggttcCttgtggaataaataccatat	8	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	74340596	74340596	C	T	SNP	TMEM2	ENST00000377044	human	ensembl	69_37n	-1	known	silent	c.2079	p.K693	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	297	0	0	202	57	22.01	-	-	-	T	74340596	C	T	74340596	2	4	275	1	0	0	0	0	0	0	0	1	16216	680	24	4		4	TMEM2	9	74340596	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25018	74340596	66872835	2672	28359										
TMC1	0	genome.wustl.edu	37	chr9	75435981	75435981	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtccctcccaccatcttttGattgtggtccattcaggtct	7	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	75435981	75435981	G	T	SNP	TMC1	ENST00000297784	human	ensembl	69_37n	1	known	missense	c.1987	p.D663Y	1.000	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091	273	0	0	184	26	12.38	-	-	-	T	75435981	G	T	75435981	3	4	275	1	0	0	0	0	1	0	0	0	16079	1290	45	2	2049	2	TMC1	9	75435981	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1095385	75435981	65777450	2673	28360										
ALDH1A1	0	genome.wustl.edu	37	chr9	75545796	75545796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttggataatactcaccGccagcagcagacgatctctt	8	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	75545796	75545796	G	A	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	missense	c.311	p.A104V	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	174	0	0	96	18	15.52	-	-	-	A	75545796	G	A	75545796	3	1	275	1	0	0	0	0	1	0	0	0	490	1101	38	1	1238	1	ALDH1A1	9	75545796	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	109815	75545796	65667635	2674	28361										
ANXA1	0	genome.wustl.edu	37	chr9	75778399	75778399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatttctttcagggtgaccGatctgaggactttggtgtga	14	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	75778399	75778399	G	A	SNP	ANXA1	ENST00000257497	human	ensembl	69_37n	1	known	missense	c.563	p.R188Q	0.994	superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	435	0	0	195	66	25.19	-	-	-	A	75778399	G	A	75778399	3	1	275	1	0	0	0	0	1	0	0	0	713	1058	37	1	589	1	ANXA1	9	75778399	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	232603	75778399	65435032	2675	28362										
TRPM6	0	genome.wustl.edu	37	chr9	77376715	77376715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgccctatttctgaagagCctgaaagatctgcaaggaaa	9	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	77376715	77376715	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.4682	p.G1561D	0.003	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	367	1	0.27	195	68	25.76	-	-	-	T	77376715	C	T	77376715	3	4	275	1	0	0	0	0	1	0	0	0	16686	739	26	4	1438	4	TRPM6	9	77376715	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1598316	77376715	63836716	2676	28363										
TRPM6	0	genome.wustl.edu	37	chr9	77377907	77377907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttgcaaagtgtcaacaGcagaaaggactttcagggta	10	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	77377907	77377907	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.3680	p.A1227V	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	199	0	0	113	27	19.15	-	-	-	A	77377907	G	A	77377907	3	1	275	1	0	0	0	0	1	0	0	0	16686	971	34	4	2444	4	TRPM6	9	77377907	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1192	77377907	63835524	2677	28364										
PCSK5	0	genome.wustl.edu	37	chr9	78790193	78790193	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatggaatggaatggaatcGaatcgaatcgaatcgaatag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	78790193	78790193	G	A	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	1	known	missense	c.2048	p.R683Q	0.005	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	40	0	0	27	8	22.86	-	-	-	A	78790193	G	A	78790193	3	1	275	1	0	0	0	0	1	0	0	0	11676	1073	37	1		1	PCSK5	9	78790193	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1412286	78790193	62423238	2678	28365	241	2								
PCSK5	0	genome.wustl.edu	37	chr9	78790202	78790202	+	Missense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatggaatcgaatcgaatCgaatcgaatagaatagaata							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	78790202	78790202	C	T	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	1	known	missense	c.2057	p.S686L	0.001	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	37	0	0	20	8	28.57	-	-	-	T	78790202	C	T	78790202	3	4	275	1	0	0	0	0	1	0	0	0	11676	899	31	1		1	PCSK5	9	78790202	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9	78790202	62423229	2679	28366	241	2								
PRUNE2	0	genome.wustl.edu	37	chr9	79253109	79253109	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtatcactcacaggaaaaGattttccatgacatagtggt	8	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	79253109	79253109	G	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.7750	p.L2584I	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	82	0	0	70	13	15.66	-	-	-	T	79253109	G	T	79253109	3	4	275	1	0	0	0	0	1	0	0	0	12721	942	33	2	470	2	PRUNE2	9	79253109	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	462907	79253109	61960322	2680	28367										
PRUNE2	0	genome.wustl.edu	37	chr9	79321549	79321549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaggattagtatagtgtgTttccacgggctcaatatcac	9	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	79321549	79321549	T	C	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.4564	p.T1522A	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	101	0	0	51	24	31.58	-	-	-	C	79321549	T	C	79321549	3	2	275	1	0	0	0	0	1	0	0	0	12721	1725	60	5	3673	5	PRUNE2	9	79321549	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	68440	79321549	61891882	2681	28368										
VPS13A	0	genome.wustl.edu	37	chr9	79952331	79952331	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaatattgttccagaaaaaGataatttaacatctctatca	3	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	79952331	79952331	G	T	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.6256	p.D2086Y	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	159	0	0	94	27	22.31	-	-	-	T	79952331	G	T	79952331	3	4	275	1	0	0	0	0	1	0	0	0	17286	942	33	2	6442	2	VPS13A	9	79952331	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	630782	79952331	61261100	2682	28369										
CEP78	0	genome.wustl.edu	37	chr9	80855092	80855092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actaattctgagagagagggAtttaactattctagcaaagg	10	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	80855092	80855092	A	C	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	missense	c.407	p.D136A	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	259	0	0	143	58	28.86	-	-	-	C	80855092	A	C	80855092	3	2	275	1	0	0	0	0	1	0	0	0	3291	333	12	5	413	5	CEP78	9	80855092	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	902761	80855092	60358339	2683	28370										
PSAT1	0	genome.wustl.edu	37	chr9	80943014	80943014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagatgaatattccattccGcattggcaatgccaaaggag	9	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	80943014	80943014	G	A	SNP	PSAT1	ENST00000376588	human	ensembl	69_37n	1	known	missense	c.917	p.R306H	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	-	no_errors	PSAT1	HGNC	ENSG00000135069	184	1	0.54	145	20	12.05	-	-	-	A	80943014	G	A	80943014	3	1	275	1	0	0	0	0	1	0	0	0	12724	1087	38	1	947	1	PSAT1	9	80943014	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	87922	80943014	60270417	2684	28371										
RASEF	0	genome.wustl.edu	37	chr9	85622385	85622385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgcctctcaagactatttCgatcttctgtgtatgctcgg	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	85622385	85622385	C	T	SNP	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	missense	c.995	p.R332Q	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	700	0	0	568	75	11.65	-	-	-	T	85622385	C	T	85622385	3	4	275	1	0	0	0	0	1	0	0	0	13151	884	31	1	1271	1	RASEF	9	85622385	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4679371	85622385	55591046	2685	28372										
KIF27	0	genome.wustl.edu	37	chr9	86498853	86498853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttgtgtttcaatcagttCgacttttgcctgttctgcat	7	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	86498853	86498853	C	T	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.2320	p.E774K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	352	0	0	219	44	16.73	-	-	-	T	86498853	C	T	86498853	3	4	275	1	0	0	0	0	1	0	0	0	8348	893	31	1	1921	1	KIF27	9	86498853	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	876468	86498853	54714578	2686	28373										
KIF27	0	genome.wustl.edu	37	chr9	86502079	86502079	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatttttgcaaattcaattCttgactctcctggagacaat	5	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	86502079	86502079	C	A	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	nonsense	c.2116	p.E706*	0.604	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	184	0	0	85	30	26.09	-	-	-	A	86502079	C	A	86502079	4	1	275	1	0	0	0	0	0	1	0	0	8348	922	32	2	2129	2	KIF27	9	86502079	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3226	86502079	54711352	2687	28374										
SLC28A3	0	genome.wustl.edu	37	chr9	86920202	86920202	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccccagatgatgtgccgaaGagttgttttgtgtttcctac	11	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	86920202	86920202	G	T	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.301	p.L101I	0.000	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	311	0	0	173	25	12.63	-	-	-	T	86920202	G	T	86920202	3	4	275	1	0	0	0	0	1	0	0	0	14622	942	33	2	1834	2	SLC28A3	9	86920202	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	418123	86920202	54293229	2688	28375										
AGTPBP1	0	genome.wustl.edu	37	chr9	88204545	88204545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcacataacacatctttccGaaaatagatttgctgaggat	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	88204545	88204545	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.2656	p.R886W	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	303	0	0	179	63	26.03	-	-	-	A	88204545	G	A	88204545	3	1	275	1	0	0	0	0	1	0	0	0	400	1057	37	1	1088	1	AGTPBP1	9	88204545	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1284343	88204545	53008886	2689	28376										
NAA35	0	genome.wustl.edu	37	chr9	88628764	88628764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatacagtaccttctaagtgGctttgaattggaactctaca	8	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	88628764	88628764	G	A	SNP	NAA35	ENST00000361671	human	ensembl	69_37n	1	known	missense	c.1520	p.G507D	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040	152	1	0.65	103	42	28.97	-	-	-	A	88628764	G	A	88628764	3	1	275	1	0	0	0	0	1	0	0	0	10195	1203	42	4	1582	4	NAA35	9	88628764	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	424219	88628764	52584667	2690	28377										
ZCCHC6	0	genome.wustl.edu	37	chr9	88919853	88919853	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgataaaagccttcattataAaatttgtcactaaaaagaag	5	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	88919853	88919853	A	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.3896	p.F1299C	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	102	0	0	81	19	19	-	-	-	C	88919853	A	C	88919853	3	2	275	1	0	0	0	0	1	0	0	0	17688	14	1	5	607	5	ZCCHC6	9	88919853	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	291089	88919853	52293578	2691	28378										
ZCCHC6	0	genome.wustl.edu	37	chr9	88933974	88933974	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacaggctcaatttagttcCtgttagggatatatgaaaag	9	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	88933974	88933974	C	A	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	splice_site	c.3116-1	e15-1	1.000	-	-	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	141	0	0	76	44	36.67	-	-	-	A	88933974	C	A	88933974	5	1	275	1	0	0	0	0	0	0	1	0	17688	695	24	4	1420	4	ZCCHC6	9	88933974	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14121	88933974	52279457	2692	28379										
SECISBP2	0	genome.wustl.edu	37	chr9	91953429	91953429	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcctcaagaaagaataaGaaaaagaaagaaaaatctac	7	5	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	91953429	91953429	G	A	SNP	SECISBP2	ENST00000375807	human	ensembl	69_37n	1	known	silent	c.1146	p.K382	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	169	0	0	143	52	26.67	-	-	-	A	91953429	G	A	91953429	2	1	275	1	0	0	0	0	0	0	0	1	14094	933	33	2		2	SECISBP2	9	91953429	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3019455	91953429	49260002	2693	28380										
SYK	0	genome.wustl.edu	37	chr9	93606262	93606262	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgggaggaggcagaagatTacctggtccaggggggcatg	18	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	93606262	93606262	T	G	SNP	SYK	ENST00000375746	human	ensembl	69_37n	1	known	missense	c.82	p.Y28D	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	143	0	0	95	24	20.17	-	-	-	G	93606262	T	G	93606262	3	3	275	1	0	0	0	0	1	0	0	0	15530	1754	61	5	84	5	SYK	9	93606262	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1652833	93606262	47607169	2694	28381										
NOL8	0	genome.wustl.edu	37	chr9	95077825	95077825	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcatcactatcatggcaaGagacacgatttttgatacct	6	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	95077825	95077825	G	T	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361Y	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	250	0	0	208	37	15.1	-	-	-	T	95077825	G	T	95077825	3	4	275	1	0	0	0	0	1	0	0	0	10599	942	33	2	2465	2	NOL8	9	95077825	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1471563	95077825	46135606	2695	28382										
PHF2	0	genome.wustl.edu	37	chr9	96425264	96425264	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtggagaggctggaaattCgagagcaaaccaagagcaag	14	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	96425264	96425264	C	T	SNP	PHF2	ENST00000359246	human	ensembl	69_37n	1	known	nonsense	c.1774	p.R592*	0.994	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724	75	0	0	80	23	22.33	-	-	-	T	96425264	C	T	96425264	4	4	275	1	0	0	0	0	0	1	0	0	11904	876	31	1	1824	1	PHF2	9	96425264	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1347439	96425264	44788167	2696	28383										
PTPDC1	0	genome.wustl.edu	37	chr9	96857615	96857615	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagtttacttctacaatttCggatggaaggattatggtgt	10	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	96857615	96857615	C	T	SNP	PTPDC1	ENST00000375360	human	ensembl	69_37n	1	known	silent	c.471	p.F157	0.793	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	242	2	0.82	195	34	14.59	-	-	-	T	96857615	C	T	96857615	2	4	275	1	0	0	0	0	0	0	0	1	12854	883	31	1		1	PTPDC1	9	96857615	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	432351	96857615	44355816	2697	28384										
C9orf3	0	genome.wustl.edu	37	chr9	97844999	97844999	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccgaaatgttattttaacGaggtgattctctccctttcc	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	97844999	97844999	G	A	SNP	C9orf3	ENST00000463372	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.430	-	-	-	no_errors	C9orf3	HGNC	ENSG00000148120	207	0	0	215	48	18.18	-	-	-	A	97844999	G	A	97844999	1	1	275	0	1	0	0	0	0	0	0	0	2502	1073	37	1		1	C9orf3	9	97844999	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	987384	97844999	43368432	2698	28385										
FANCC	0	genome.wustl.edu	37	chr9	97873874	97873874	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatctcagcccatcctccGaagtgaatgaacaggaacca	7	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	97873874	97873874	G	A	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	silent	c.1200	p.F400	1.000	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	99	1	0.99	55	8	12.7	-	-	-	A	97873874	G	A	97873874	2	1	275	1	0	0	0	0	0	0	0	1	5710	1049	37	1		1	FANCC	9	97873874	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28875	97873874	43339557	2699	28386										
PTCH1	0	genome.wustl.edu	37	chr9	98218668	98218668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccatcatgccgaacagctCgaccgtcatcagcgccagga	10	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	98218668	98218668	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3196	p.E1066K	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	34	0	0	28	12	30	-	-	-	T	98218668	C	T	98218668	3	4	275	1	0	0	0	0	1	0	0	0	12810	893	31	1	1167	1	PTCH1	9	98218668	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	344794	98218668	42994763	2700	28387										
PTCH1	0	genome.wustl.edu	37	chr9	98231099	98231099	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagatgagagtgtccacttCgtacaggggggctcgaggca	15	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	98231099	98231099	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	silent	c.2184	p.T728	0.975	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	153	0	0	131	83	38.6	-	-	-	T	98231099	C	T	98231099	2	4	275	1	0	0	0	0	0	0	0	1	12810	871	31	1		1	PTCH1	9	98231099	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12431	98231099	42982332	2701	28388										
FAM22G	0	genome.wustl.edu	37	chr9	99697617	99697617	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactggtttacagcccagttCtccgatccctggcccggcgg	11	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	99697617	99697617	C	A	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	missense	c.721	p.L241I	0.024	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	145	0	0	85	10	10.53	-	-	-	A	99697617	C	A	99697617	3	1	275	1	0	0	0	0	1	0	0	0	5588	913	32	2	731	2	FAM22G	9	99697617	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1466518	99697617	41515814	2702	28389										
ANKS6	0	genome.wustl.edu	37	chr9	101536359	101536359	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgaggggagctccgtttcGaagctgaaaaagacaggctg	16	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	101536359	101536359	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	nonsense	c.1621	p.R541*	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	58	0	0	37	11	22.92	-	-	-	A	101536359	G	A	101536359	4	1	275	1	0	0	0	0	0	1	0	0	691	1066	37	1	1022	1	ANKS6	9	101536359	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1838742	101536359	39677072	2703	28390										
GALNT12	0	genome.wustl.edu	37	chr9	101599330	101599330	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccccaagcaagctccctActcccgcaacaaggctctgg	7	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	101599330	101599330	A	G	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	missense	c.1112	p.Y371C	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	176	0	0	104	46	30.46	-	-	-	G	101599330	A	G	101599330	3	3	275	1	0	0	0	0	1	0	0	0	6260	391	14	5	1134	5	GALNT12	9	101599330	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	62971	101599330	39614101	2704	28391										
STX17	0	genome.wustl.edu	37	chr9	102730876	102730876	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtggaaaattgatacaaaGaaagaaacagaaaatgatgg	11	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	102730876	102730876	G	T	SNP	STX17	ENST00000259400	human	ensembl	69_37n	1	known	missense	c.830	p.R277I	1.000	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874	477	0	0	323	37	10.25	-	-	-	T	102730876	G	T	102730876	3	4	275	1	0	0	0	0	1	0	0	0	15431	942	33	2	856	2	STX17	9	102730876	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1131546	102730876	38482555	2705	28392										
TMEFF1	0	genome.wustl.edu	37	chr9	103310114	103310114	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacaatccctgttttgttCgagaagcatcttgtataaag	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	103310114	103310114	C	T	SNP	TMEFF1	ENST00000374879	human	ensembl	69_37n	1	known	nonsense	c.649	p.R217*	0.998	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,pfscan_EG-like_dom	-	no_errors	TMEFF1	HGNC	ENSG00000241697	305	0	0	178	30	14.42	-	-	-	T	103310114	C	T	103310114	4	4	275	1	0	0	0	0	0	1	0	0	16108	876	31	1	671	1	TMEFF1	9	103310114	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	579238	103310114	37903317	2706	28393										
TMEFF1	0	genome.wustl.edu	37	chr9	103323702	103323702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagtgatcaaagagaagatGtttatattggaaaccacatg	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	103323702	103323702	G	A	SNP	TMEFF1	ENST00000374879	human	ensembl	69_37n	1	known	missense	c.799	p.V267I	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,pfscan_EG-like_dom	-	no_errors	TMEFF1	HGNC	ENSG00000241697	508	0	0	338	55	13.92	-	-	-	A	103323702	G	A	103323702	3	1	275	1	0	0	0	0	1	0	0	0	16108	1377	48	4	829	4	TMEFF1	9	103323702	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13588	103323702	37889729	2707	28394										
MURC	0	genome.wustl.edu	37	chr9	103348452	103348452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaggaagcttttaagatgCgcagcctcaggaaaggtaag	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	103348452	103348452	C	T	SNP	MURC	ENST00000307584	human	ensembl	69_37n	1	known	missense	c.814	p.R272C	0.190	NULL	NULL	-	no_errors	MURC	HGNC	ENSG00000170681	236	0	0	162	31	15.98	-	-	-	T	103348452	C	T	103348452	3	4	275	1	0	0	0	0	1	0	0	0	10059	768	27	1	820	1	MURC	9	103348452	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24750	103348452	37864979	2708	28395										
BAAT	0	genome.wustl.edu	37	chr9	104124756	104124756	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggtgcttcctgagaaatCtctggatctccttccaagca	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	104124756	104124756	C	A	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	missense	c.1211	p.R404I	1.000	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	353	0	0	203	77	27.5	-	-	-	A	104124756	C	A	104124756	3	1	275	1	0	0	0	0	1	0	0	0	1284	913	32	2	49	2	BAAT	9	104124756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	776304	104124756	37088675	2709	28396										
BAAT	0	genome.wustl.edu	37	chr9	104125295	104125295	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accccaacgcctgagccaaaGacctgaaaaaaataatagaa	6	11	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	104125295	104125295	G	T	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	silent	c.672	p.V224	0.217	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	104	0	0	85	11	11.46	-	-	-	T	104125295	G	T	104125295	2	4	275	1	0	0	0	0	0	0	0	1	1284	929	33	2		2	BAAT	9	104125295	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	539	104125295	37088136	2710	28397										
BAAT	0	genome.wustl.edu	37	chr9	104133260	104133260	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcgaaggcggccttctcGaaccttaattcgtgtgacac	9	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	104133260	104133260	G	A	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	nonsense	c.427	p.R143*	0.001	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	185	0	0	88	30	25.21	-	-	-	A	104133260	G	A	104133260	4	1	275	1	0	0	0	0	0	1	0	0	1284	1066	37	1	841	1	BAAT	9	104133260	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7965	104133260	37080171	2711	28398										
ZNF189	0	genome.wustl.edu	37	chr9	104171636	104171636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctttgtaatcttattcGacatcagggtgttcacacag	8	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	104171636	104171636	G	A	SNP	ZNF189	ENST00000339664	human	ensembl	69_37n	1	known	missense	c.1586	p.R529Q	0.855	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF189	HGNC	ENSG00000136870	395	1	0.25	206	91	30.64	-	-	-	A	104171636	G	A	104171636	3	1	275	1	0	0	0	0	1	0	0	0	17850	1058	37	1	1596	1	ZNF189	9	104171636	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38376	104171636	37041795	2712	28399										
PPP3R2	0	genome.wustl.edu	37	chr9	104357018	104357018	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctccatcaccgtcggtgtcGaagacgtcgatcactcgccg	10	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	104357018	104357018	G	A	SNP	PPP3R2	ENST00000374806	human	ensembl	69_37n	-1	known	silent	c.195	p.F65	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,prints_Parvalbumin,pfscan_EF_HAND_2	-	no_errors	PPP3R2	HGNC	ENSG00000188386	66	0	0	42	7	14.29	-	-	-	A	104357018	G	A	104357018	2	1	275	1	0	0	0	0	0	0	0	1	12478	1049	37	1		1	PPP3R2	9	104357018	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	185382	104357018	36856413	2713	28400										
CYLC2	0	genome.wustl.edu	37	chr9	105765528	105765528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcaaaaccttctcaaataCgggacaacacggtttctgta	7	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	105765528	105765528	C	T	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	missense	c.163	p.R55W	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	360	0	0	187	58	23.48	-	-	-	T	105765528	C	T	105765528	3	4	275	1	0	0	0	0	1	0	0	0	4173	527	19	1	173	1	CYLC2	9	105765528	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1408510	105765528	35447903	2714	28401										
NIPSNAP3A	0	genome.wustl.edu	37	chr9	107516813	107516813	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaatgttttctgaaaaattCtttttctccctattccagga	5	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	107516813	107516813	C	A	SNP	NIPSNAP3A	ENST00000471001	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NIPSNAP3A	HGNC	ENSG00000136783	78	0	0	39	6	13.33	-	-	-	A	107516813	C	A	107516813	1	1	275	0	1	0	0	0	0	0	0	0	10502	928	32	2		2	NIPSNAP3A	9	107516813	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1751285	107516813	33696618	2715	28402										
ABCA1	0	genome.wustl.edu	37	chr9	107566907	107566907	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagtttagtaaaaagtcacCttttggctatgatctgcaca	7	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	107566907	107566907	C	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.4559	p.S1520I	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	325	0	0	200	31	13.42	-	-	-	A	107566907	C	A	107566907	3	1	275	1	0	0	0	0	1	0	0	0	28	695	24	4	2302	4	ABCA1	9	107566907	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50094	107566907	33646524	2716	28403										
ABCA1	0	genome.wustl.edu	37	chr9	107645361	107645361	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgtaatgttctcagaactTtgcgcatgtccttcatgctg	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	107645361	107645361	T	G	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.380	p.K127T	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	374	0	0	241	47	16.32	-	-	-	G	107645361	T	G	107645361	3	3	275	1	0	0	0	0	1	0	0	0	28	1841	64	5	6589	5	ABCA1	9	107645361	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	78454	107645361	33568070	2717	28404										
ZNF462	0	genome.wustl.edu	37	chr9	109687237	109687237	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttaccctcagatgaagccGaagtcacctcacaattctgg	7	13	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	109687237	109687237	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.1044	p.P348	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	290	0	0	199	36	15.32	-	-	-	A	109687237	G	A	109687237	2	1	275	1	0	0	0	0	0	0	0	1	18022	1045	37	1		1	ZNF462	9	109687237	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2041876	109687237	31526194	2718	28405										
ZNF462	0	genome.wustl.edu	37	chr9	109689356	109689356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attatcagaagaaacaccccGaagaaaaggcttcctacttt	6	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	109689356	109689356	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.3163	p.E1055K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	345	0	0	229	39	14.5	-	-	-	A	109689356	G	A	109689356	3	1	275	1	0	0	0	0	1	0	0	0	18022	1059	37	1	3169	1	ZNF462	9	109689356	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2119	109689356	31524075	2719	28406										
IKBKAP	0	genome.wustl.edu	37	chr9	111637189	111637189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actaaccaagaacaggaaccGaagtcttctgttgctgataa	8	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	111637189	111637189	G	A	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.3917	p.S1306L	0.073	pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	183	0	0	110	49	30.82	-	-	-	A	111637189	G	A	111637189	3	1	275	1	0	0	0	0	1	0	0	0	7664	1059	37	1	89	1	IKBKAP	9	111637189	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1947833	111637189	29576242	2720	28407										
CTNNAL1	0	genome.wustl.edu	37	chr9	111739420	111739420	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgtaaattgtaataaattTtaatactattctgtgaacta	4	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	111739420	111739420	T	G	SNP	CTNNAL1	ENST00000488130	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	50	0	0	55	8	12.7	-	-	-	G	111739420	T	G	111739420	1	3	275	0	1	0	0	0	0	0	0	0	4047	1856	64	5		5	CTNNAL1	9	111739420	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	102231	111739420	29474011	2721	28408										
PTPN3	0	genome.wustl.edu	37	chr9	112211098	112211098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattctcattaccttccttCgcaaatatccatcttcagtt	2	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	112211098	112211098	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	69_37n	-1	known	missense	c.406	p.E136K	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,prints_Band_41_fam	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN3	HGNC	ENSG00000070159	86	0	0	71	10	12.35	-	-	-	T	112211098	C	T	112211098	3	4	275	1	0	0	0	0	1	0	0	0	12872	893	31	1	2419	1	PTPN3	9	112211098	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	471678	112211098	29002333	2722	28409										
PALM2	0	genome.wustl.edu	37	chr9	112705573	112705573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgacgggaacgcggctgaGcttgtgtccgggaggccggt	18	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	112705573	112705573	G	A	SNP	PALM2	ENST00000448454	human	ensembl	69_37n	1	known	silent	c.1110	p.E370	1.000	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444	279	0	0	212	37	14.8	-	-	-	A	112705573	G	A	112705573	2	1	275	1	0	0	0	0	0	0	0	1	11482	962	34	4		4	PALM2	9	112705573	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	494475	112705573	28507858	2723	28410										
SVEP1	0	genome.wustl.edu	37	chr9	113149723	113149723	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgagaaattcaagtggaGtttcacacctggtctctaaa	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	113149723	113149723	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.9902	p.T3301N	0.982	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	278	1	0.36	181	72	28.46	-	-	-	T	113149723	G	T	113149723	3	4	275	1	0	0	0	0	1	0	0	0	15511	1029	36	4	841	4	SVEP1	9	113149723	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	444150	113149723	28063708	2724	28411										
SVEP1	0	genome.wustl.edu	37	chr9	113170167	113170167	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attatggcaccatagctgtaAtctgcaccttctacaaaacc	5	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	113170167	113170167	A	C	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.7713	p.D2571E	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	45	0	0	29	5	14.71	-	-	-	C	113170167	A	C	113170167	3	2	275	1	0	0	0	0	1	0	0	0	15511	98	4	5	3046	5	SVEP1	9	113170167	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	20444	113170167	28043264	2725	28412										
OR2K2	0	genome.wustl.edu	37	chr9	114090037	114090037	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccctctgctgaggtgattCtcagaatagtggaaaggatg	12	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114090037	114090037	C	T	SNP	OR2K2	ENST00000374428	human	ensembl	69_37n	-1	known	missense	c.764	p.R255K	0.828	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133	349	0	0	313	36	10.29	-	-	-	T	114090037	C	T	114090037	3	4	275	1	0	0	0	0	1	0	0	0	11078	913	32	2	276	2	OR2K2	9	114090037	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	919870	114090037	27123394	2726	28413										
KIAA0368	0	genome.wustl.edu	37	chr9	114151987	114151987	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctggtagcaattacattaAaaccaaaagcagcaccctaa	5	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114151987	114151987	A	C	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.3830	p.F1277C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	196	0	0	135	21	13.46	-	-	-	C	114151987	A	C	114151987	3	2	275	1	0	0	0	0	1	0	0	0	8223	14	1	5	2303	5	KIAA0368	9	114151987	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	61950	114151987	27061444	2727	28414										
ZNF483	0	genome.wustl.edu	37	chr9	114289936	114289936	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgagaccagacattcacacGaaagaacagattttagagct	8	9	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114289936	114289936	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	silent	c.261	p.T87	0.437	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	135	0	0	70	23	24.73	-	-	-	A	114289936	G	A	114289936	2	1	275	1	0	0	0	0	0	0	0	1	18032	1045	37	1		1	ZNF483	9	114289936	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	137949	114289936	26923495	2728	28415										
ZNF483	0	genome.wustl.edu	37	chr9	114304385	114304385	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttgggggataggtcccaAaaatgcagtaagtgtgggat	14	5	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114304385	114304385	A	C	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	missense	c.1170	p.Q390H	0.024	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	211	0	0	175	28	13.79	-	-	-	C	114304385	A	C	114304385	3	2	275	1	0	0	0	0	1	0	0	0	18032	11	1	5	1188	5	ZNF483	9	114304385	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	14449	114304385	26909046	2729	28416										
ZNF483	0	genome.wustl.edu	37	chr9	114304843	114304843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcttattcaacatcagcGaattcatactggagaaaaac	5	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114304843	114304843	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	missense	c.1628	p.R543Q	0.663	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	96	0	0	90	23	20.18	-	-	-	A	114304843	G	A	114304843	3	1	275	1	0	0	0	0	1	0	0	0	18032	1058	37	1	1646	1	ZNF483	9	114304843	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	458	114304843	26908588	2730	28417										
C9orf84	0	genome.wustl.edu	37	chr9	114520456	114520456	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacaaaagcttccaaagtttCttgaagagagaaacattccc	6	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114520456	114520456	C	A	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	nonsense	c.424	p.E142*	0.585	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	86	0	0	65	11	14.47	-	-	-	A	114520456	C	A	114520456	4	1	275	1	0	0	0	0	0	1	0	0	2525	922	32	2	3998	2	C9orf84	9	114520456	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	215613	114520456	26692975	2731	28418										
UGCG	0	genome.wustl.edu	37	chr9	114693582	114693582	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcaatgtccactcaagttGcaatgcaaaactctggctca	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114693582	114693582	G	C	SNP	UGCG	ENST00000374279	human	ensembl	69_37n	1	known	missense	c.769	p.A257P	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	UGCG	HGNC	ENSG00000148154	217	0	0	158	27	14.52	-	-	-	C	114693582	G	C	114693582	3	2	275	1	0	0	0	0	1	0	0	0	17036	1319	46	4	795	4	UGCG	9	114693582	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	173126	114693582	26519849	2732	28419										
SUSD1	0	genome.wustl.edu	37	chr9	114864566	114864566	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttctaagagatcaacttCtaaaagacaagagagagagt	8	6	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	114864566	114864566	C	A	SNP	SUSD1	ENST00000374264	human	ensembl	69_37n	-1	known	splice_site	c.1172-1	e9-1	0.997	-	-	-	no_errors	SUSD1	HGNC	ENSG00000106868	92	0	0	66	18	21.43	-	-	-	A	114864566	C	A	114864566	5	1	275	1	0	0	0	0	0	0	1	0	15498	927	32	2	1108	2	SUSD1	9	114864566	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	170984	114864566	26348865	2733	28420										
HSDL2	0	genome.wustl.edu	37	chr9	115200848	115200848	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcaactttgtcattgatGaaaatatcttaaaagaagaa	7	5	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115200848	115200848	G	T	SNP	HSDL2	ENST00000398805	human	ensembl	69_37n	1	known	nonsense	c.736	p.E246*	1.000	NULL	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	226	0	0	154	21	12	-	-	-	T	115200848	G	T	115200848	4	4	275	1	0	0	0	0	0	1	0	0	7445	1291	45	2	762	2	HSDL2	9	115200848	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336282	115200848	26012583	2734	28421										
ZNF883	0	genome.wustl.edu	37	chr9	115759518	115759518	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctctcccttgtatgtattCgcttatgtttagttagagct	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115759518	115759518	C	A	SNP	ZNF883	ENST00000427548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623	413	0	0	346	48	12.18	-	-	-	A	115759518	C	A	115759518	1	1	275	0	1	0	0	0	0	0	0	0	18291	884	31	3		3	ZNF883	9	115759518	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	558670	115759518	25453913	2735	28422										
ZNF883	0	genome.wustl.edu	37	chr9	115760176	115760176	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attacaaggatagggtttttCtccagtatggattctctcat	8	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115760176	115760176	C	A	SNP	ZNF883	ENST00000427548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623	150	0	0	115	18	13.53	-	-	-	A	115760176	C	A	115760176	1	1	275	0	1	0	0	0	0	0	0	0	18291	922	32	2		2	ZNF883	9	115760176	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	658	115760176	25453255	2736	28423										
ZFP37	0	genome.wustl.edu	37	chr9	115805188	115805188	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgttacattcataaggtttCtccccagtatgagttctctg	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115805188	115805188	C	A	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.1755	p.E585D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	347	0	0	255	32	11.15	-	-	-	A	115805188	C	A	115805188	3	1	275	1	0	0	0	0	1	0	0	0	17744	912	32	2	186	2	ZFP37	9	115805188	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45012	115805188	25408243	2737	28424										
ZFP37	0	genome.wustl.edu	37	chr9	115805792	115805792	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttttctccagtatgaattCttagatggtcagtgagtgca	10	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115805792	115805792	C	A	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.1151	p.R384I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	116	0	0	105	21	16.67	-	-	-	A	115805792	C	A	115805792	3	1	275	1	0	0	0	0	1	0	0	0	17744	913	32	2	790	2	ZFP37	9	115805792	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	604	115805792	25407639	2738	28425										
FKBP15	0	genome.wustl.edu	37	chr9	115961167	115961167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgatcctaacttcaagcGaagcaacttatctttgttag	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	115961167	115961167	G	A	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	missense	c.685	p.R229C	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	256	0	0	180	21	10.45	-	-	-	A	115961167	G	A	115961167	3	1	275	1	0	0	0	0	1	0	0	0	5951	1058	37	1	3058	1	FKBP15	9	115961167	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155375	115961167	25252264	2739	28426										
POLE3	0	genome.wustl.edu	37	chr9	116172155	116172155	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccttcccttctctgcacaAaaaagctaaagcaaagtgat	6	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	116172155	116172155	A	C	SNP	POLE3	ENST00000479871	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	POLE3	HGNC	ENSG00000148229	72	0	0	35	4	10.26	-	-	-	C	116172155	A	C	116172155	1	2	275	0	1	0	0	0	0	0	0	0	12272	29	1	5		5	POLE3	9	116172155	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	210988	116172155	25041276	2740	28427										
C9orf43	0	genome.wustl.edu	37	chr9	116184853	116184853	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgggaagaagaaaagaaaGaactcggcagtggtgagttt	14	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	116184853	116184853	G	T	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	missense	c.471	p.K157N	0.001	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	608	0	0	457	59	11.43	-	-	-	T	116184853	G	T	116184853	3	4	275	1	0	0	0	0	1	0	0	0	2508	933	33	2	489	2	C9orf43	9	116184853	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12698	116184853	25028578	2741	28428										
COL27A1	0	genome.wustl.edu	37	chr9	117053181	117053181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcttacctggagcacaggGacccccaggattcaaggtca	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	117053181	117053181	G	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.4460	p.G1487V	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	60	0	0	37	5	11.9	-	-	-	T	117053181	G	T	117053181	3	4	275	1	0	0	0	0	1	0	0	0	3715	1174	41	2	4650	2	COL27A1	9	117053181	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	868328	117053181	24160250	2742	28429										
ORM2	0	genome.wustl.edu	37	chr9	117093932	117093932	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctacctggacgatgagaaGaactgggggctgtctttcta	12	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	117093932	117093932	G	T	SNP	ORM2	ENST00000431067	human	ensembl	69_37n	1	known	missense	c.414	p.K138N	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM2	HGNC	ENSG00000228278	108	0	0	60	9	13.04	-	-	-	T	117093932	G	T	117093932	3	4	275	1	0	0	0	0	1	0	0	0	11341	933	33	2	428	2	ORM2	9	117093932	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40751	117093932	24119499	2743	28430										
TNFSF15	0	genome.wustl.edu	37	chr9	117552753	117552753	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagtaagaaggctccaaaGaaggttttatcttcttttgt	8	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	117552753	117552753	G	T	SNP	TNFSF15	ENST00000374045	human	ensembl	69_37n	-1	known	missense	c.735	p.F245L	1.000	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	-	no_errors	TNFSF15	HGNC	ENSG00000181634	149	0	0	112	13	10.4	-	-	-	T	117552753	G	T	117552753	3	4	275	1	0	0	0	0	1	0	0	0	16403	933	33	2	24	2	TNFSF15	9	117552753	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	458821	117552753	23660678	2744	28431										
TNC	0	genome.wustl.edu	37	chr9	117798149	117798149	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagccctcctcttaaaatCttttccttccccgtggggag	7	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	117798149	117798149	C	A	SNP	TNC	ENST00000460345	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	TNC	HGNC	ENSG00000041982	16	0	0	10	6	37.5	-	-	-	A	117798149	C	A	117798149	1	1	275	0	1	0	0	0	0	0	0	0	16365	928	32	2		2	TNC	9	117798149	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245396	117798149	23415282	2745	28432										
TNC	0	genome.wustl.edu	37	chr9	117845005	117845005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatctcccaggtttcaaaaGcaatgtctagaggatcccac	8	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	117845005	117845005	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.2213	p.A738V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	133	0	0	96	13	11.93	-	-	-	A	117845005	G	A	117845005	3	1	275	1	0	0	0	0	1	0	0	0	16365	971	34	4	4488	4	TNC	9	117845005	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46856	117845005	23368426	2746	28433										
MEGF9	0	genome.wustl.edu	37	chr9	123370046	123370046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgcaatttccctcgaggtCgtgaacataaccttctaggc	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	123370046	123370046	C	T	SNP	MEGF9	ENST00000426959	human	ensembl	69_37n	-1	known	missense	c.1441	p.D481N	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780	247	0	0	227	34	12.98	-	-	-	T	123370046	C	T	123370046	3	4	275	1	0	0	0	0	1	0	0	0	9535	884	31	1	486	1	MEGF9	9	123370046	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5525041	123370046	17843385	2747	28434										
PSMD5	0	genome.wustl.edu	37	chr9	123594073	123594073	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttttgggacaccgatgtCtctgcacatttaagtcaatg	8	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	123594073	123594073	C	A	SNP	PSMD5	ENST00000471789	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSMD5	HGNC	ENSG00000095261	208	0	0	247	29	10.51	-	-	-	A	123594073	C	A	123594073	1	1	275	0	1	0	0	0	0	0	0	0	12781	928	32	2		2	PSMD5	9	123594073	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	224027	123594073	17619358	2748	28435										
RAB14	0	genome.wustl.edu	37	chr9	123952956	123952956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattttttggccactaacttCgattattcttgtaccaaatt	4	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	123952956	123952956	C	T	SNP	RAB14	ENST00000373840	human	ensembl	69_37n	-1	known	missense	c.160	p.E54K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396	290	0	0	151	35	18.82	-	-	-	T	123952956	C	T	123952956	3	4	275	1	0	0	0	0	1	0	0	0	12983	893	31	1	507	1	RAB14	9	123952956	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	358883	123952956	17260475	2749	28436										
OR1L3	0	genome.wustl.edu	37	chr9	125437459	125437459	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatttattctcttgggactCtcctctcggtctgaagacca	8	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	125437459	125437459	C	A	SNP	OR1L3	ENST00000304820	human	ensembl	69_37n	1	known	silent	c.51	p.L17	0.663	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481	450	0	0	306	49	13.8	-	-	-	A	125437459	C	A	125437459	2	1	275	1	0	0	0	0	0	0	0	1	11037	900	32	2		2	OR1L3	9	125437459	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1484503	125437459	15775972	2750	28437										
RABGAP1	0	genome.wustl.edu	37	chr9	125761027	125761027	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtagtactactgaaaatttCtttttgaaactaaaacaggt	6	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	125761027	125761027	C	A	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	missense	c.1356	p.F452L	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	152	0	0	93	30	24.39	-	-	-	A	125761027	C	A	125761027	3	1	275	1	0	0	0	0	1	0	0	0	13047	912	32	2	1390	2	RABGAP1	9	125761027	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	323568	125761027	15452404	2751	28438										
NR6A1	0	genome.wustl.edu	37	chr9	127302448	127302448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcccagacatgatcctttCgatttcttcttccgatatct	5	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	127302448	127302448	C	T	SNP	NR6A1	ENST00000487099	human	ensembl	69_37n	-1	known	missense	c.460	p.E154K	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	417	0	0	412	68	14.17	-	-	-	T	127302448	C	T	127302448	3	4	275	1	0	0	0	0	1	0	0	0	10710	893	31	1	1006	1	NR6A1	9	127302448	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1541421	127302448	13910983	2752	28439										
PPP6C	0	genome.wustl.edu	37	chr9	127915943	127915943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaatttcctgattccgttCgatggttcgaatttgatcca	9	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	127915943	127915943	C	T	SNP	PPP6C	ENST00000451402	human	ensembl	69_37n	-1	known	missense	c.649	p.E217K	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP6C	HGNC	ENSG00000119414	159	0	0	132	26	16.46	-	-	-	T	127915943	C	T	127915943	3	4	275	1	0	0	0	0	1	0	0	0	12484	893	31	1	387	1	PPP6C	9	127915943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	613495	127915943	13297488	2753	28440										
HSPA5	0	genome.wustl.edu	37	chr9	128002529	128002529	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcttcaggagcaaatgtCtttgtttgcccacctccaat	6	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	128002529	128002529	C	A	SNP	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	missense	c.414	p.K138N	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	346	0	0	193	33	14.6	-	-	-	A	128002529	C	A	128002529	3	1	275	1	0	0	0	0	1	0	0	0	7467	912	32	2	1574	2	HSPA5	9	128002529	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86586	128002529	13210902	2754	28441										
GAPVD1	0	genome.wustl.edu	37	chr9	128064373	128064373	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagactgcttatggagaattCttgagtcgattgagggaaaa	13	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	128064373	128064373	C	A	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.297	p.F99L	1.000	superfamily_Rho_GTPase_activation_prot	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	508	0	0	340	43	11.23	-	-	-	A	128064373	C	A	128064373	3	1	275	1	0	0	0	0	1	0	0	0	6289	912	32	2	303	2	GAPVD1	9	128064373	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61844	128064373	13149058	2755	28442										
GAPVD1	0	genome.wustl.edu	37	chr9	128094908	128094908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatggatgaaataactcacGgtaagagggggaaatgagga	14	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	128094908	128094908	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.2428	p.D810N	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	140	0	0	122	20	13.99	-	-	-	A	128094908	G	A	128094908	3	1	275	1	0	0	0	0	1	0	0	0	6289	1130	39	1	2474	1	GAPVD1	9	128094908	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30535	128094908	13118523	2756	28443										
MAPKAP1	0	genome.wustl.edu	37	chr9	128322034	128322034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccagcggggggaaatcggtGtccacctccccatcatcctc	10	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	128322034	128322034	G	A	SNP	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	silent	c.726	p.D242	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	156	0	0	87	15	14.56	-	-	-	A	128322034	G	A	128322034	2	1	275	1	0	0	0	0	0	0	0	1	9359	1368	48	4		4	MAPKAP1	9	128322034	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	227126	128322034	12891397	2757	28444										
GARNL3	0	genome.wustl.edu	37	chr9	130075751	130075751	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacattggaaacgatgccgaGaagagccctttcttcttgtc	9	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	130075751	130075751	G	T	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.351	p.E117D	1.000	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	339	1	0.29	219	89	28.8	-	-	-	T	130075751	G	T	130075751	3	4	275	1	0	0	0	0	1	0	0	0	6291	933	33	2	365	2	GARNL3	9	130075751	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1753717	130075751	11137680	2758	28445										
ZNF79	0	genome.wustl.edu	37	chr9	130206325	130206325	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggctggaagattatatctGgatcaccaccagagcaagcc	10	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	130206325	130206325	G	T	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	nonsense	c.346	p.G116*	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	87	0	0	62	24	27.91	-	-	-	T	130206325	G	T	130206325	4	4	275	1	0	0	0	0	0	1	0	0	18254	1349	47	4	364	4	ZNF79	9	130206325	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	130574	130206325	11007106	2759	28446										
STXBP1	0	genome.wustl.edu	37	chr9	130427552	130427552	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggacaatgccctgctggCtcagctaatccaggacaagc	10	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	130427552	130427552	C	A	SNP	STXBP1	ENST00000373299	human	ensembl	69_37n	1	known	missense	c.605	p.A202D	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	207	0	0	105	19	15.32	-	-	-	A	130427552	C	A	130427552	3	1	275	1	0	0	0	0	1	0	0	0	15443	797	28	4	635	4	STXBP1	9	130427552	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	221227	130427552	10785879	2760	28447										
CIZ1	0	genome.wustl.edu	37	chr9	130928673	130928673	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggggctggggttcttggCcgccttgtatttctggatac	16	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	130928673	130928673	C	A	SNP	CIZ1	ENST00000538431	human	ensembl	69_37n	-1	known	missense	c.2578	p.A860S	0.995	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337	214	0	0	114	19	14.29	-	-	-	A	130928673	C	A	130928673	3	1	275	1	0	0	0	0	1	0	0	0	3471	739	26	4	200	4	CIZ1	9	130928673	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	501121	130928673	10284758	2761	28448										
SPTAN1	0	genome.wustl.edu	37	chr9	131370243	131370243	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgagatcaagcagaaacTtgatattcttgaccaggagc	9	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	131370243	131370243	T	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.4259	p.L1420R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	145	0	0	140	25	15.15	-	-	-	G	131370243	T	G	131370243	3	3	275	1	0	0	0	0	1	0	0	0	15208	1609	56	5	4385	5	SPTAN1	9	131370243	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	441570	131370243	9843188	2762	28449										
WDR34	0	genome.wustl.edu	37	chr9	131403095	131403095	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgcgagcctgggtatgtCatactgggacgggggctgca	18	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	131403095	131403095	C	T	SNP	WDR34	ENST00000372715	human	ensembl	69_37n	-1	known	missense	c.310	p.D104N	0.126	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333	43	0	0	25	7	21.88	-	-	-	T	131403095	C	T	131403095	3	4	275	1	0	0	0	0	1	0	0	0	17385	826	29	2	1332	2	WDR34	9	131403095	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32852	131403095	9810336	2763	28450										
SH3GLB2	0	genome.wustl.edu	37	chr9	131784616	131784616	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagatcttctctgtccagttCttggtgctgtctgcccgggc	11	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	131784616	131784616	C	A	SNP	SH3GLB2	ENST00000372554	human	ensembl	69_37n	-1	known	missense	c.150	p.K50N	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341	186	0	0	97	13	11.82	-	-	-	A	131784616	C	A	131784616	3	1	275	1	0	0	0	0	1	0	0	0	14343	912	32	2	1077	2	SH3GLB2	9	131784616	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	381521	131784616	9428815	2764	28451										
TOR1B	0	genome.wustl.edu	37	chr9	132569511	132569511	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtaatgtgagtgcatgtgcGaactctgttttcatatttga	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	132569511	132569511	G	A	SNP	TOR1B	ENST00000259339	human	ensembl	69_37n	1	known	silent	c.510	p.A170	0.000	pfam_Torsin,pfam_ATPase_AAA_core,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816	182	0	0	66	48	42.11	-	-	-	A	132569511	G	A	132569511	2	1	275	1	0	0	0	0	0	0	0	1	16470	1045	37	1		1	TOR1B	9	132569511	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	784895	132569511	8643920	2765	28452										
TOR1A	0	genome.wustl.edu	37	chr9	132576040	132576040	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttccttctgtgcgtgttCgggaggcttcacgtcctcgc	11	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	132576040	132576040	C	T	SNP	TOR1A	ENST00000474192	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TOR1A	HGNC	ENSG00000136827	11	0	0	7	5	41.67	-	-	-	T	132576040	C	T	132576040	1	4	275	0	1	0	0	0	0	0	0	0	16467	899	31	1		1	TOR1A	9	132576040	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6529	132576040	8637391	2766	28453										
C9orf78	0	genome.wustl.edu	37	chr9	132590455	132590455	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaactcagtaccgcctattCattttcttgaacttctcata	3	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	132590455	132590455	C	A	SNP	C9orf78	ENST00000372447	human	ensembl	69_37n	-1	known	missense	c.855	p.M285I	1.000	NULL	pfam_Hep_59	-	no_errors	C9orf78	HGNC	ENSG00000136819	129	0	0	118	23	16.31	-	-	-	A	132590455	C	A	132590455	3	1	275	1	0	0	0	0	1	0	0	0	2521	826	29	2	18	2	C9orf78	9	132590455	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14415	132590455	8622976	2767	28454										
FNBP1	0	genome.wustl.edu	37	chr9	132740795	132740795	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcgtgccaagtccacaatGatctgtgatgccatgttctc	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	132740795	132740795	G	T	SNP	FNBP1	ENST00000449089	human	ensembl	69_37n	-1	known	nonsense	c.179	p.S60*	0.983	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNBP1	HGNC	ENSG00000187239	266	0	0	187	98	34.39	-	-	-	T	132740795	G	T	132740795	4	4	275	1	0	0	0	0	0	1	0	0	6011	1280	45	2	1615	2	FNBP1	9	132740795	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	150340	132740795	8472636	2768	28455										
LAMC3	0	genome.wustl.edu	37	chr9	133963173	133963173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcactggagaaggacatCgagaccttgtcagagctgct	11	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	133963173	133963173	C	T	SNP	LAMC3	ENST00000355452	human	ensembl	69_37n	1	putative	missense	c.491	p.S164L	0.118	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LAMC3	HGNC	ENSG00000050555	56	0	0	42	15	26.32	-	-	-	T	133963173	C	T	133963173	3	4	275	1	0	0	0	0	1	0	0	0	8670	874	31	1	4552	1	LAMC3	9	133963173	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1222378	133963173	7250258	2769	28456										
NUP214	0	genome.wustl.edu	37	chr9	134014704	134014704	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctactggaggattctagtCgagctgaattgcctgtgaca	13	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	134014704	134014704	C	T	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	nonsense	c.1042	p.R348*	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	261	0	0	184	42	18.58	-	-	-	T	134014704	C	T	134014704	4	4	275	1	0	0	0	0	0	1	0	0	10835	876	31	1	1080	1	NUP214	9	134014704	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	51531	134014704	7198727	2770	28457										
POMT1	0	genome.wustl.edu	37	chr9	134385144	134385144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccagccctttttctctgaGctggtggttctggctaacac	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	134385144	134385144	G	T	SNP	POMT1	ENST00000372228	human	ensembl	69_37n	1	known	missense	c.554	p.S185I	0.044	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714	623	0	0	512	85	14.24	-	-	-	T	134385144	G	T	134385144	3	4	275	1	0	0	0	0	1	0	0	0	12319	971	34	4	576	4	POMT1	9	134385144	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	370440	134385144	6828287	2771	28458										
RAPGEF1	0	genome.wustl.edu	37	chr9	134504000	134504000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctcatgggggccaccacaGccactcgggtaggggacggc	17	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	134504000	134504000	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	missense	c.956	p.A319V	0.999	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	108	0	0	70	16	18.6	-	-	-	A	134504000	G	A	134504000	3	1	275	1	0	0	0	0	1	0	0	0	13126	971	34	4	2399	4	RAPGEF1	9	134504000	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	118856	134504000	6709431	2772	28459										
SETX	0	genome.wustl.edu	37	chr9	135150709	135150709	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgggccttgtaatgagttAttatgccaatgtttcgaaaa	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135150709	135150709	A	G	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.7034	p.I2345T	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	554	0	0	466	74	13.65	-	-	-	G	135150709	A	G	135150709	3	3	275	1	0	0	0	0	1	0	0	0	14229	449	16	5	1015	5	SETX	9	135150709	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	646709	135150709	6062722	2773	28460										
SETX	0	genome.wustl.edu	37	chr9	135163695	135163695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgataatctagaaattcCtttcttttatgcatcgcctg	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135163695	135163695	C	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.6252	p.K2084N	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	106	0	0	79	42	34.71	-	-	-	A	135163695	C	A	135163695	3	1	275	1	0	0	0	0	1	0	0	0	14229	680	24	4	1821	4	SETX	9	135163695	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12986	135163695	6049736	2774	28461										
SETX	0	genome.wustl.edu	37	chr9	135202871	135202871	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccctgctcttttaacatCtgtactttcacaatcagaaa	4	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135202871	135202871	C	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.4114	p.D1372Y	0.001	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	334	1	0.3	238	91	27.66	-	-	-	A	135202871	C	A	135202871	3	1	275	1	0	0	0	0	1	0	0	0	14229	913	32	2	3987	2	SETX	9	135202871	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39176	135202871	6010560	2775	28462										
SETX	0	genome.wustl.edu	37	chr9	135203976	135203976	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggaggtatctccaacattAttttggttagctgtgaaaca	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135203976	135203976	A	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.3009	p.N1003K	0.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	333	0	0	225	36	13.79	-	-	-	C	135203976	A	C	135203976	3	2	275	1	0	0	0	0	1	0	0	0	14229	446	16	5	5092	5	SETX	9	135203976	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1105	135203976	6009455	2776	28463										
SETX	0	genome.wustl.edu	37	chr9	135204368	135204368	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagagaaaataactaattCttcattctttaattgtttct	4	5	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135204368	135204368	C	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	nonsense	c.2617	p.E873*	0.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	199	0	0	157	27	14.67	-	-	-	A	135204368	C	A	135204368	4	1	275	1	0	0	0	0	0	1	0	0	14229	922	32	2	5484	2	SETX	9	135204368	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	392	135204368	6009063	2777	28464										
TTF1	0	genome.wustl.edu	37	chr9	135254547	135254547	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcactttagaaaaggaaaGaaaagataaaaagcaagtta	7	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135254547	135254547	G	T	SNP	TTF1	ENST00000461970	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTF1	HGNC	ENSG00000125482	186	0	0	124	44	26.19	-	-	-	T	135254547	G	T	135254547	1	4	275	0	1	0	0	0	0	0	0	0	16815	957	33	2		2	TTF1	9	135254547	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	50179	135254547	5958884	2778	28465										
TTF1	0	genome.wustl.edu	37	chr9	135276918	135276918	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcctagatttcacaccttCttccatcatggcgccatcac	7	15	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135276918	135276918	C	A	SNP	TTF1	ENST00000334270	human	ensembl	69_37n	-1	known	nonsense	c.1291	p.E431*	0.008	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482	220	0	0	214	26	10.83	-	-	-	A	135276918	C	A	135276918	4	1	275	1	0	0	0	0	0	1	0	0	16815	922	32	2	1466	2	TTF1	9	135276918	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22371	135276918	5936513	2779	28466										
GTF3C4	0	genome.wustl.edu	37	chr9	135554790	135554790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagaaaaccccttcagaagCcttgtggaaacccacccatg	8	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	135554790	135554790	C	T	SNP	GTF3C4	ENST00000372146	human	ensembl	69_37n	1	known	missense	c.1784	p.A595V	0.004	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484	148	0	0	72	41	36.28	-	-	-	T	135554790	C	T	135554790	3	4	275	1	0	0	0	0	1	0	0	0	6926	739	26	4	1790	4	GTF3C4	9	135554790	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	277872	135554790	5658641	2780	28467										
ABO	0	genome.wustl.edu	37	chr9	136131209	136131209	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtacttgttcaggtggctCtcgtcgtgccacacggcctc	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	136131209	136131209	C	A	SNP	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	18	0	0	11	6	35.29	-	-	-	A	136131209	C	A	136131209	1	1	275	0	1	0	0	0	0	0	0	0	97	912	32	2		2	ABO	9	136131209	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	576419	136131209	5082222	2781	28468										
RPL7A	0	genome.wustl.edu	37	chr9	136217431	136217431	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttggtcaaaatacagtctTcagctaatgctttcttccag	6	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	136217431	136217431	T	C	SNP	RPL7A	ENST00000463740	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL7A	HGNC	ENSG00000148303	89	0	0	66	9	12	-	-	-	C	136217431	T	C	136217431	1	2	275	0	1	0	0	0	0	0	0	0	13686	1798	62	5		5	RPL7A	9	136217431	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	86222	136217431	4996000	2782	28469										
KCNT1	0	genome.wustl.edu	37	chr9	138669251	138669251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacaagctgatcatcgtctCggcagagacggccggcaatg	13	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	138669251	138669251	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.2417	p.S806L	0.995	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	76	0	0	44	28	38.89	-	-	-	T	138669251	C	T	138669251	3	4	275	1	0	0	0	0	1	0	0	0	8145	893	31	1	2499	1	KCNT1	9	138669251	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2451820	138669251	2544180	2783	28470										
CAMSAP1	0	genome.wustl.edu	37	chr9	138703279	138703279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcaagttaaactgttttCggtctgagctgtatttatac	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	138703279	138703279	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.4718	p.R1573Q	1.000	pfam_CKK_domain,superfamily_PRC_barrell-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	247	0	0	179	100	35.71	-	-	-	T	138703279	C	T	138703279	3	4	275	1	0	0	0	0	1	0	0	0	2636	884	31	1	127	1	CAMSAP1	9	138703279	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34028	138703279	2510152	2784	28471										
CAMSAP1	0	genome.wustl.edu	37	chr9	138703317	138703317	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacagtttgtcgatcattttCttggtgatgttctttggccc	9	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	138703317	138703317	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.4680	p.K1560N	1.000	pfam_CKK_domain,superfamily_PRC_barrell-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	252	0	0	217	48	18.11	-	-	-	A	138703317	C	A	138703317	3	1	275	1	0	0	0	0	1	0	0	0	2636	912	32	2	165	2	CAMSAP1	9	138703317	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	38	138703317	2510114	2785	28472										
SDCCAG3	0	genome.wustl.edu	37	chr9	139297260	139297260	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaagagtcttcctcctcgtCtttaacttcagaaattctgt	5	11	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	139297260	139297260	C	A	SNP	SDCCAG3	ENST00000357365	human	ensembl	69_37n	-1	known	missense	c.1288	p.D430Y	0.945	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689	21	0	0	14	4	22.22	-	-	-	A	139297260	C	A	139297260	3	1	275	1	0	0	0	0	1	0	0	0	14046	913	32	2	23	2	SDCCAG3	9	139297260	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	593943	139297260	1916171	2786	28473										
EHMT1	0	genome.wustl.edu	37	chr9	140648628	140648628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtttggttctccagagttcGgaatccagcattaagaagaa	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	140648628	140648628	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.1254	p.S418	0.964	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	218	0	0	117	17	12.69	-	-	-	A	140648628	G	A	140648628	2	1	275	1	0	0	0	0	0	0	0	1	5018	1103	39	1		1	EHMT1	9	140648628	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1351368	140648628	564803	2787	28474										
CACNA1B	0	genome.wustl.edu	37	chr9	140954105	140954105	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgctcttctttttctctaGaactatttcagagatgcctg	6	10	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	9	140954105	140954105	G	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	splice_site	c.4588-1	e31-1	1.000	-	-	-	no_errors	CACNA1B	HGNC	ENSG00000148408	109	0	0	71	30	29.7	-	-	-	T	140954105	G	T	140954105	5	4	275	1	0	0	0	0	0	0	1	0	2564	956	33	2	4706	2	CACNA1B	9	140954105	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	305477	140954105	259326	2788	28475										
DIP2C	0	genome.wustl.edu	37	chr10	394617	394617	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggtaggcaacgtcgtcgcGatgttctgtgggtgcggggg	19	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	394617	394617	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.3195	p.I1065	0.144	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	50	0	0	22	7	24.14	-	-	-	A	394617	G	A	394617	2	1	275	1	0	0	0	0	0	0	0	1	4565	1048	37	1		1	DIP2C	10	394617	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09		394617	135140130	2789	28476										
GTPBP4	0	genome.wustl.edu	37	chr10	1042142	1042142	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggacggatgtgcacagtGatcaagaggcagaagcagag	16	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	1042142	1042142	G	T	SNP	GTPBP4	ENST00000360803	human	ensembl	69_37n	1	known	silent	c.420	p.V140	0.196	NULL	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937	187	0	0	125	35	21.74	-	-	-	T	1042142	G	T	1042142	2	4	275	1	0	0	0	0	0	0	0	1	6933	1277	45	2		2	GTPBP4	10	1042142	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	647525	1042142	134492605	2790	28477										
GTPBP4	0	genome.wustl.edu	37	chr10	1044978	1044978	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggatgtccagccctatgcGttcacaaccaagtctctgtt	9	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	1044978	1044978	G	A	SNP	GTPBP4	ENST00000360803	human	ensembl	69_37n	1	known	silent	c.597	p.A199	0.957	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937	739	0	0	524	62	10.54	-	-	-	A	1044978	G	A	1044978	2	1	275	1	0	0	0	0	0	0	0	1	6933	1132	40	1		1	GTPBP4	10	1044978	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2836	1044978	134489769	2791	28478										
ADARB2	0	genome.wustl.edu	37	chr10	1279754	1279754	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaccttcttttaaccgcacGaatatcgatcgctctgagtc	6	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	1279754	1279754	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	silent	c.1395	p.F465	0.127	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	326	0	0	140	36	20.22	-	-	-	A	1279754	G	A	1279754	2	1	275	1	0	0	0	0	0	0	0	1	283	1049	37	1		1	ADARB2	10	1279754	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	234776	1279754	134254993	2792	28479										
AKR1C4	0	genome.wustl.edu	37	chr10	5238627	5238627	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taataatgtatgtaaaaattCtctttgataagaaacgagtg	7	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	5238627	5238627	C	A	SNP	AKR1C4	ENST00000469875	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKR1C4	HGNC	ENSG00000198610	40	0	0	30	6	16.67	-	-	-	A	5238627	C	A	5238627	1	1	275	0	1	0	0	0	0	0	0	0	472	928	32	2		2	AKR1C4	10	5238627	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3958873	5238627	130296120	2793	28480										
AKR1C4	0	genome.wustl.edu	37	chr10	5254997	5254997	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttttggaggacccagttCtttgtgccttagcaaagaaa	9	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	5254997	5254997	C	A	SNP	AKR1C4	ENST00000263126	human	ensembl	69_37n	1	known	missense	c.721	p.L241I	0.638	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610	202	0	0	99	32	24.24	-	-	-	A	5254997	C	A	5254997	3	1	275	1	0	0	0	0	1	0	0	0	472	913	32	2	747	2	AKR1C4	10	5254997	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16370	5254997	130279750	2794	28481										
TUBAL3	0	genome.wustl.edu	37	chr10	5442911	5442911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcatttgtgtgctccattTttgcattttccagctgatcc	7	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	5442911	5442911	T	C	SNP	TUBAL3	ENST00000380419	human	ensembl	69_37n	-1	known	missense	c.143	p.K48R	0.002	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462	115	0	0	74	16	17.78	-	-	-	C	5442911	T	C	5442911	3	2	275	1	0	0	0	0	1	0	0	0	16848	1841	64	5	1209	5	TUBAL3	10	5442911	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	187914	5442911	130091836	2795	28482										
GDI2	0	genome.wustl.edu	37	chr10	5815855	5815855	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccattctgtacaatgatttCttcaatgggtttattcagca	6	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	5815855	5815855	C	A	SNP	GDI2	ENST00000380132	human	ensembl	69_37n	-1	known	nonsense	c.781	p.E261*	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608	468	0	0	266	33	11.04	-	-	-	A	5815855	C	A	5815855	4	1	275	1	0	0	0	0	0	1	0	0	6373	922	32	2	588	2	GDI2	10	5815855	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	372944	5815855	129718892	2796	28483										
PRKCQ	0	genome.wustl.edu	37	chr10	6506292	6506292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgtcgctctggaaaggtcGaacttgtggcagctttggat	13	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	6506292	6506292	G	A	SNP	PRKCQ	ENST00000397178	human	ensembl	69_37n	-1	known	missense	c.746	p.S249L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKCQ	HGNC	ENSG00000065675	595	0	0	457	64	12.26	-	-	-	A	6506292	G	A	6506292	3	1	275	1	0	0	0	0	1	0	0	0	12596	1049	37	1	716	1	PRKCQ	10	6506292	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	690437	6506292	129028455	2797	28484										
SFMBT2	0	genome.wustl.edu	37	chr10	7205865	7205865	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcaggagtgcttggccgTcaatatcctgcaggaaaaga	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	7205865	7205865	T	C	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.2552	p.D851G	0.998	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	65	0	0	50	17	25.37	-	-	-	C	7205865	T	C	7205865	3	2	275	1	0	0	0	0	1	0	0	0	14246	1667	58	5	136	5	SFMBT2	10	7205865	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	699573	7205865	128328882	2798	28485										
ITIH2	0	genome.wustl.edu	37	chr10	7763623	7763623	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttctaggcgcacgtctcCttcaagcccacggtagcaca	8	15	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	7763623	7763623	C	T	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	silent	c.750	p.S250	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	139	0	0	84	22	20.56	-	-	-	T	7763623	C	T	7763623	2	4	275	1	0	0	0	0	0	0	0	1	7958	668	24	4		4	ITIH2	10	7763623	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	557758	7763623	127771124	2799	28486										
UPF2	0	genome.wustl.edu	37	chr10	12042003	12042003	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgctggcttcctcatcttCttgttctaatgtaaaattag	7	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	12042003	12042003	C	A	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	nonsense	c.1660	p.E554*	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	257	0	0	125	64	33.68	-	-	-	A	12042003	C	A	12042003	4	1	275	1	0	0	0	0	0	1	0	0	17101	922	32	2	2222	2	UPF2	10	12042003	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4278380	12042003	123492744	2800	28487										
NUDT5	0	genome.wustl.edu	37	chr10	12214822	12214822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgttaatggtgactgtcacGatgtgtatagtacagtttga	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	12214822	12214822	G	A	SNP	NUDT5	ENST00000476462	human	ensembl	69_37n	-1	known	missense	c.298	p.R100C	0.397	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUDT5	HGNC	ENSG00000165609	286	0	0	195	79	28.83	-	-	-	A	12214822	G	A	12214822	3	1	275	1	0	0	0	0	1	0	0	0	10815	1048	37	1	246	1	NUDT5	10	12214822	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	172819	12214822	123319925	2801	28488										
CDC123	0	genome.wustl.edu	37	chr10	12280463	12280463	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcctttacagttgtgttCgatatatacagagacagtag	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	12280463	12280463	C	T	SNP	CDC123	ENST00000440613	human	ensembl	69_37n	1	known	nonsense	c.256	p.R86*	0.614	pfam_D123	pfam_D123	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDC123	HGNC	ENSG00000151465	234	0	0	196	23	10.5	-	-	-	T	12280463	C	T	12280463	4	4	275	1	0	0	0	0	0	1	0	0	3084	883	31	1	734	1	CDC123	10	12280463	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	65641	12280463	123254284	2802	28489										
CCDC3	0	genome.wustl.edu	37	chr10	13040469	13040469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctgggaagatggcatcttGgaaattgactccgtgaggca	14	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	13040469	13040469	G	T	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	missense	c.418	p.Q140K	1.000	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	143	0	0	67	9	11.84	-	-	-	T	13040469	G	T	13040469	3	4	275	1	0	0	0	0	1	0	0	0	2830	1357	47	4	402	4	CCDC3	10	13040469	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	760006	13040469	122494278	2803	28490										
OPTN	0	genome.wustl.edu	37	chr10	13158444	13158444	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgacctgaggaagtaacttCtttatgatttataccaggat	9	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	13158444	13158444	C	A	SNP	OPTN	ENST00000486862	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	OPTN	HGNC	ENSG00000123240	25	0	0	24	7	22.58	-	-	-	A	13158444	C	A	13158444	1	1	275	0	1	0	0	0	0	0	0	0	10962	928	32	2		2	OPTN	10	13158444	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117975	13158444	122376303	2804	28491										
PRPF18	0	genome.wustl.edu	37	chr10	13658488	13658488	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatgccagaactggcagaGaaaagattttttccaagcat	8	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	13658488	13658488	G	T	SNP	PRPF18	ENST00000378572	human	ensembl	69_37n	1	known	nonsense	c.883	p.E295*	1.000	pfam_Prp18,superfamily_Prp18	pfam_Prp18,pfam_PRP4,superfamily_Prp18,smart_SFM	-	no_errors	PRPF18	HGNC	ENSG00000165630	141	1	0.7	96	19	16.52	-	-	-	T	13658488	G	T	13658488	4	4	275	1	0	0	0	0	0	1	0	0	12644	943	33	2	917	2	PRPF18	10	13658488	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	500044	13658488	121876259	2805	28492										
HSPA14	0	genome.wustl.edu	37	chr10	14912623	14912623	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaggatttagataaaaaaGaaaatggattacgtgatata	8	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	14912623	14912623	G	T	SNP	HSPA14	ENST00000378372	human	ensembl	69_37n	1	known	nonsense	c.1408	p.E470*	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	158	0	0	85	17	16.67	-	-	-	T	14912623	G	T	14912623	4	4	275	1	0	0	0	0	0	1	0	0	7460	943	33	2	1458	2	HSPA14	10	14912623	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1254135	14912623	120622124	2806	28493										
SUV39H2	0	genome.wustl.edu	37	chr10	14939434	14939434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattcgctttgcatctttcGaactagcaatggacgtggct	10	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	14939434	14939434	G	A	SNP	SUV39H2	ENST00000354919	human	ensembl	69_37n	1	known	missense	c.767	p.R256Q	1.000	smart_SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H2	HGNC	ENSG00000152455	103	1	0.96	72	11	13.25	-	-	-	A	14939434	G	A	14939434	3	1	275	1	0	0	0	0	1	0	0	0	15504	1058	37	1	589	1	SUV39H2	10	14939434	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26811	14939434	120595313	2807	28494										
NMT2	0	genome.wustl.edu	37	chr10	15145270	15145270	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgcagttgtcgctaacatGaattttttctgttgtcattt	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15145270	15145270	G	T	SNP	NMT2	ENST00000466201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NMT2	HGNC	ENSG00000152465	54	0	0	39	16	29.09	-	-	-	T	15145270	G	T	15145270	1	4	275	0	1	0	0	0	0	0	0	0	10576	1305	45	2		2	NMT2	10	15145270	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	205836	15145270	120389477	2808	28495										
NMT2	0	genome.wustl.edu	37	chr10	15161458	15161458	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaagtgttgattaattctcGaactgatttgatatcttttg	8	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15161458	15161458	G	A	SNP	NMT2	ENST00000378143	human	ensembl	69_37n	-1	known	nonsense	c.1147	p.R383*	0.700	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465	408	0	0	201	104	33.99	-	-	-	A	15161458	G	A	15161458	4	1	275	1	0	0	0	0	0	1	0	0	10576	1066	37	1	458	1	NMT2	10	15161458	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16188	15161458	120373289	2809	28496										
ITGA8	0	genome.wustl.edu	37	chr10	15617487	15617487	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaacacagacaatggctaCctcataaatatgttccacca	4	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15617487	15617487	C	T	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	splice_site	c.2478+1	e24+1	1.000	-	-	-	no_errors	ITGA8	HGNC	ENSG00000077943	326	0	0	202	42	15.5	-	-	-	T	15617487	C	T	15617487	5	4	275	1	0	0	0	0	0	0	1	0	7936	521	18	4	740	4	ITGA8	10	15617487	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	456029	15617487	119917260	2810	28497										
ITGA8	0	genome.wustl.edu	37	chr10	15646295	15646295	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctccttccccttcatttCttgcatttattatgagcata	4	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15646295	15646295	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.2030	p.R677I	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	434	0	0	370	50	11.9	-	-	-	A	15646295	C	A	15646295	3	1	275	1	0	0	0	0	1	0	0	0	7936	913	32	2	1205	2	ITGA8	10	15646295	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28808	15646295	119888452	2811	28498										
ITGA8	0	genome.wustl.edu	37	chr10	15648306	15648306	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcactaacaatgttttctCtgtagtagttcaatattggt	7	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15648306	15648306	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.1880	p.R627I	0.158	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	474	0	0	288	57	16.52	-	-	-	A	15648306	C	A	15648306	3	1	275	1	0	0	0	0	1	0	0	0	7936	913	32	2	1363	2	ITGA8	10	15648306	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2011	15648306	119886441	2812	28499										
ITGA8	0	genome.wustl.edu	37	chr10	15686062	15686062	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtctatgtctgaatctcCtcttaaagtaaagccaaatc	5	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15686062	15686062	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	nonsense	c.1366	p.G456*	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	203	0	0	144	28	16.28	-	-	-	A	15686062	C	A	15686062	4	1	275	1	0	0	0	0	0	1	0	0	7936	690	24	4	1897	4	ITGA8	10	15686062	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37756	15686062	119848685	2813	28500										
ITGA8	0	genome.wustl.edu	37	chr10	15714660	15714660	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggaagctggagccacttcCgtctgcttttctcctgccag	10	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	15714660	15714660	C	T	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	silent	c.765	p.T255	0.198	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	555	0	0	299	126	29.44	-	-	-	T	15714660	C	T	15714660	2	4	275	1	0	0	0	0	0	0	0	1	7936	639	23	1		1	ITGA8	10	15714660	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28598	15714660	119820087	2814	28501										
PTER	0	genome.wustl.edu	37	chr10	16547150	16547150	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgcctgatgataacaaaaGaattagaaggtaaatatggt	9	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	16547150	16547150	G	T	SNP	PTER	ENST00000298942	human	ensembl	69_37n	1	known	missense	c.830	p.R277I	1.000	pfam_Aryldialkylphosphatase	pfam_Aryldialkylphosphatase,pfam_TatD_superfamily	-	no_errors	PTER	HGNC	ENSG00000165983	142	0	0	156	29	15.68	-	-	-	T	16547150	G	T	16547150	3	4	275	1	0	0	0	0	1	0	0	0	12819	942	33	2	840	2	PTER	10	16547150	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	832490	16547150	118987597	2815	28502										
CUBN	0	genome.wustl.edu	37	chr10	16955929	16955929	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagatccggccatgaggatTtgggttcgggtagttgggag	18	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	16955929	16955929	T	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.7414	p.N2472H	0.997	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	265	0	0	166	36	17.82	-	-	-	G	16955929	T	G	16955929	3	3	275	1	0	0	0	0	1	0	0	0	4082	1841	64	5	3537	5	CUBN	10	16955929	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	408779	16955929	118578818	2816	28503										
NSUN6	0	genome.wustl.edu	37	chr10	18903417	18903417	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtaatccactgaagatttCtttgcggcttagttcagaaa	9	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	18903417	18903417	C	A	SNP	NSUN6	ENST00000377304	human	ensembl	69_37n	-1	known	nonsense	c.547	p.E183*	0.997	pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,prints_RCMT,pfscan_PUA	-	no_errors	NSUN6	HGNC	ENSG00000241058	356	0	0	278	43	13.35	-	-	-	A	18903417	C	A	18903417	4	1	275	1	0	0	0	0	0	1	0	0	10755	922	32	2	890	2	NSUN6	10	18903417	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1947488	18903417	116631330	2817	28504										
COMMD3	0	genome.wustl.edu	37	chr10	22608896	22608896	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggaaacttaaagatgcttCgaaaagcctggaaagagcaa	12	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	22608896	22608896	C	T	SNP	COMMD3	ENST00000448361	human	ensembl	69_37n	1	known	nonsense	c.418	p.R140*	0.999	pfam_HCaRG	pfam_HCaRG	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COMMD3	HGNC	ENSG00000148444	74	0	0	34	12	26.09	-	-	-	T	22608896	C	T	22608896	4	4	275	1	0	0	0	0	0	1	0	0	3747	893	31	1	587	1	COMMD3	10	22608896	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3705479	22608896	112925851	2818	28505										
BMI1	0	genome.wustl.edu	37	chr10	22615839	22615839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtaaaacgtgtattgttCgttacctggagaccagcaag	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	22615839	22615839	C	T	SNP	BMI1	ENST00000376663	human	ensembl	69_37n	1	known	missense	c.133	p.R45C	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283	157	1	0.63	72	25	25.77	-	-	-	T	22615839	C	T	22615839	3	4	275	1	0	0	0	0	1	0	0	0	1460	884	31	1	139	1	BMI1	10	22615839	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6943	22615839	112918908	2819	28506										
SPAG6	0	genome.wustl.edu	37	chr10	22634686	22634686	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaaggccaggacccagttCgtgcagatggtggcggagct	16	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	22634686	22634686	C	T	SNP	SPAG6	ENST00000376603	human	ensembl	69_37n	1	known	silent	c.60	p.F20	0.998	NULL	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	77	0	0	31	6	16.22	-	-	-	T	22634686	C	T	22634686	2	4	275	1	0	0	0	0	0	0	0	1	15073	883	31	1		1	SPAG6	10	22634686	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18847	22634686	112900061	2820	28507										
PIP4K2A	0	genome.wustl.edu	37	chr10	22830773	22830773	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagacgtcgatgttcggatcGaactccccgggagccagggg	15	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	22830773	22830773	G	A	SNP	PIP4K2A	ENST00000376573	human	ensembl	69_37n	-1	known	silent	c.996	p.F332	0.829	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867	180	0	0	135	20	12.9	-	-	-	A	22830773	G	A	22830773	2	1	275	1	0	0	0	0	0	0	0	1	12010	1049	37	1		1	PIP4K2A	10	22830773	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196087	22830773	112703974	2821	28508										
ARMC3	0	genome.wustl.edu	37	chr10	23297757	23297757	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacaagaaaaaatagttatCattttagtgctggatttgga	9	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	23297757	23297757	C	A	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	missense	c.1942	p.H648N	0.805	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	249	0	0	157	26	14.13	-	-	-	A	23297757	C	A	23297757	3	1	275	1	0	0	0	0	1	0	0	0	956	826	29	2	2000	2	ARMC3	10	23297757	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	466984	23297757	112236990	2822	28509										
ARMC3	0	genome.wustl.edu	37	chr10	23326238	23326238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcattggttgctccctagttCgcggagagtacggtagagcg	15	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	23326238	23326238	C	T	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	missense	c.2449	p.R817C	1.000	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	130	0	0	109	51	31.87	-	-	-	T	23326238	C	T	23326238	3	4	275	1	0	0	0	0	1	0	0	0	956	884	31	1	2519	1	ARMC3	10	23326238	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28481	23326238	112208509	2823	28510										
KIAA1217	0	genome.wustl.edu	37	chr10	24832225	24832225	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagatcaagaggttatcacGacagattttggccaagttgt	11	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	24832225	24832225	G	A	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.4026	p.T1342	0.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	264	2	0.75	249	29	10.39	-	-	-	A	24832225	G	A	24832225	2	1	275	1	0	0	0	0	0	0	0	1	8268	1045	37	1		1	KIAA1217	10	24832225	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1505987	24832225	110702522	2824	28511										
KIAA1217	0	genome.wustl.edu	37	chr10	24833069	24833069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaaagaagccaagcgcttcGaaatcgctaggtctcaacct	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	24833069	24833069	G	A	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	missense	c.4870	p.E1624K	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	437	0	0	417	58	12.18	-	-	-	A	24833069	G	A	24833069	3	1	275	1	0	0	0	0	1	0	0	0	8268	1059	37	1	4944	1	KIAA1217	10	24833069	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	844	24833069	110701678	2825	28512										
ARHGAP21	0	genome.wustl.edu	37	chr10	24908458	24908458	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactggtactcgaggcttttCtttcctccattctttttatg	7	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	24908458	24908458	C	A	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.2366	p.R789I	0.966	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	382	0	0	223	34	13.23	-	-	-	A	24908458	C	A	24908458	3	1	275	1	0	0	0	0	1	0	0	0	873	913	32	2	3582	2	ARHGAP21	10	24908458	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75389	24908458	110626289	2826	28513										
THNSL1	0	genome.wustl.edu	37	chr10	25313141	25313141	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctcaaaaattgctcctgTcaggcacctttcaggcaacc	7	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	25313141	25313141	T	C	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	missense	c.989	p.V330A	1.000	superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	203	0	0	129	17	11.64	-	-	-	C	25313141	T	C	25313141	3	2	275	1	0	0	0	0	1	0	0	0	15957	1667	58	5	991	5	THNSL1	10	25313141	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	404683	25313141	110221606	2827	28514										
GPR158	0	genome.wustl.edu	37	chr10	25465207	25465207	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtggctggttactctttcCtctgccatctacgggttgca	12	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	25465207	25465207	C	A	SNP	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	silent	c.858	p.S286	0.976	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	33	0	0	12	4	25	-	-	-	A	25465207	C	A	25465207	2	1	275	1	0	0	0	0	0	0	0	1	6713	668	24	4		4	GPR158	10	25465207	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	152066	25465207	110069540	2828	28515										
MYO3A	0	genome.wustl.edu	37	chr10	26243812	26243812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgaaactaggatattgacGaagagattgaagcagaatat	10	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26243812	26243812	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.178	p.E60K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	304	0	0	164	51	23.72	-	-	-	A	26243812	G	A	26243812	3	1	275	1	0	0	0	0	1	0	0	0	10148	1059	37	1	184	1	MYO3A	10	26243812	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	778605	26243812	109290935	2829	28516										
MYO3A	0	genome.wustl.edu	37	chr10	26312951	26312951	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgattcttatttttctagGaatccacccccaaaactaag	4	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26312951	26312951	G	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.732	p.R244S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	190	0	0	100	37	27.01	-	-	-	T	26312951	G	T	26312951	3	4	275	1	0	0	0	0	1	0	0	0	10148	1188	41	2	758	2	MYO3A	10	26312951	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69139	26312951	109221796	2830	28517										
MYO3A	0	genome.wustl.edu	37	chr10	26414414	26414414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagaggagaaacaattatacGacccaatactgtagaaaaag	8	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26414414	26414414	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.1991	p.R664Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	122	0	0	81	22	21.36	-	-	-	A	26414414	G	A	26414414	3	1	275	1	0	0	0	0	1	0	0	0	10148	1058	37	1	2057	1	MYO3A	10	26414414	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101463	26414414	109120333	2831	28518										
MYO3A	0	genome.wustl.edu	37	chr10	26414458	26414458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgatgtcagggatgccatgGctaaaactttatatggacgt	11	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26414458	26414458	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.2035	p.A679T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	130	0	0	104	13	11.11	-	-	-	A	26414458	G	A	26414458	3	1	275	1	0	0	0	0	1	0	0	0	10148	1203	42	4	2101	4	MYO3A	10	26414458	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44	26414458	109120289	2832	28519										
MYO3A	0	genome.wustl.edu	37	chr10	26446416	26446416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagactaggattctcccatCggatactttttgctaacttt	7	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26446416	26446416	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.2971	p.R991W	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	132	0	0	166	32	16.08	-	-	-	T	26446416	C	T	26446416	3	4	275	1	0	0	0	0	1	0	0	0	10148	875	31	1	3065	1	MYO3A	10	26446416	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31958	26446416	109088331	2833	28520										
MYO3A	0	genome.wustl.edu	37	chr10	26462642	26462642	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaatctctgctaatgaaaGattcatttcagctccaaata	5	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26462642	26462642	G	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.3449	p.R1150I	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	93	0	0	49	8	14.04	-	-	-	T	26462642	G	T	26462642	3	4	275	1	0	0	0	0	1	0	0	0	10148	942	33	2	3559	2	MYO3A	10	26462642	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16226	26462642	109072105	2834	28521										
MYO3A	0	genome.wustl.edu	37	chr10	26463414	26463414	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaaatcaataacatcaaGaagaaggataacaaagactc	8	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	26463414	26463414	G	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.4221	p.K1407N	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	164	0	0	135	16	10.6	-	-	-	T	26463414	G	T	26463414	3	4	275	1	0	0	0	0	1	0	0	0	10148	933	33	2	4331	2	MYO3A	10	26463414	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	772	26463414	109071333	2835	28522										
ABI1	0	genome.wustl.edu	37	chr10	27048089	27048089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatccaccagaagatgtcGaagaagtagtagagttgtgt	12	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27048089	27048089	G	A	SNP	ABI1	ENST00000355394	human	ensembl	69_37n	-1	known	missense	c.983	p.S328L	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754	290	1	0.34	176	23	11.56	-	-	-	A	27048089	G	A	27048089	3	1	275	1	0	0	0	0	1	0	0	0	88	1059	37	1	562	1	ABI1	10	27048089	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	584675	27048089	108486658	2836	28523										
ANKRD26	0	genome.wustl.edu	37	chr10	27329051	27329051	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagtgattttttttaagttCtaataatctttcacatgaaa	4	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27329051	27329051	C	A	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	nonsense	c.2266	p.E756*	0.078	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	127	0	0	124	20	13.89	-	-	-	A	27329051	C	A	27329051	4	1	275	1	0	0	0	0	0	1	0	0	654	922	32	2	2970	2	ANKRD26	10	27329051	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	280962	27329051	108205696	2837	28524										
ANKRD26	0	genome.wustl.edu	37	chr10	27366454	27366454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttcctgttctcacagtgCcatatgttgcttctactaca	5	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27366454	27366454	C	T	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.1037	p.G346D	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	433	0	0	359	67	15.73	-	-	-	T	27366454	C	T	27366454	3	4	275	1	0	0	0	0	1	0	0	0	654	739	26	4	4346	4	ANKRD26	10	27366454	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37403	27366454	108168293	2838	28525										
YME1L1	0	genome.wustl.edu	37	chr10	27409411	27409411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accatttcaaaatttctgttCgaccttttacatctggcctt	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27409411	27409411	C	T	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	missense	c.1535	p.R512Q	1.000	tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	307	0	0	246	35	12.46	-	-	-	T	27409411	C	T	27409411	3	4	275	1	0	0	0	0	1	0	0	0	17584	884	31	1	814	1	YME1L1	10	27409411	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42957	27409411	108125336	2839	28526										
MASTL	0	genome.wustl.edu	37	chr10	27459939	27459939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttagatgcaatggatatttCgtgtgcctacagtggttcat	10	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27459939	27459939	C	T	SNP	MASTL	ENST00000375940	human	ensembl	69_37n	1	known	missense	c.2051	p.S684L	0.995	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MASTL	HGNC	ENSG00000120539	212	0	0	166	23	12.17	-	-	-	T	27459939	C	T	27459939	3	4	275	1	0	0	0	0	1	0	0	0	9399	893	31	1	2081	1	MASTL	10	27459939	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50528	27459939	108074808	2840	28527										
PTCHD3	0	genome.wustl.edu	37	chr10	27687469	27687470	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatttttatctacatagacaINStttttttcaaaaattttagt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27687469	27687470	-	T	INS	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2058_2057	p.N686fs	0.000:0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	57	0	0	34	14	29.17	-	-	-	T	27687470	-	T	27687469	7	5	275	1	0	1	1	0	0	0	0	0	12814	214	8	0	249	0	PTCHD3	10	27687469	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	227530	27687469	107847278	2841	28528										
PTCHD3	0	genome.wustl.edu	37	chr10	27687482	27687482	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catagacatttttttcaaaaAttttagtacagttttccagt	4	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27687482	27687482	A	T	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	missense	c.2045	p.I682N	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	62	0	0	38	5	11.63	-	-	-	T	27687482	A	T	27687482	3	4	275	1	0	0	0	0	1	0	0	0	12814	101	4	5	262	5	PTCHD3	10	27687482	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	13	27687482	107847265	2842	28529										
PTCHD3	0	genome.wustl.edu	37	chr10	27702556	27702556	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaccaccagaagcgagacGaaattggcttcggtgctcct	12	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	27702556	27702556	G	A	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	silent	c.624	p.F208	0.016	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	73	0	0	27	14	33.33	-	-	-	A	27702556	G	A	27702556	2	1	275	1	0	0	0	0	0	0	0	1	12814	1049	37	1		1	PTCHD3	10	27702556	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15074	27702556	107832191	2843	28530										
MKX	0	genome.wustl.edu	37	chr10	28023636	28023636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcactcccgctttgatgaccGaattctcacttttaatcaca	4	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	28023636	28023636	G	A	SNP	MKX	ENST00000375790	human	ensembl	69_37n	-1	known	missense	c.587	p.S196L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MKX	HGNC	ENSG00000150051	342	1	0.29	260	121	31.51	-	-	-	A	28023636	G	A	28023636	3	1	275	1	0	0	0	0	1	0	0	0	9681	1059	37	1	483	1	MKX	10	28023636	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	321080	28023636	107511111	2844	28531										
ARMC4	0	genome.wustl.edu	37	chr10	28229609	28229609	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcggatggcttctttattCgtatgactcttactgcagct	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	28229609	28229609	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	silent	c.1869	p.T623	0.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	110	0	0	61	7	10.29	-	-	-	T	28229609	C	T	28229609	2	4	275	1	0	0	0	0	0	0	0	1	957	871	31	1		1	ARMC4	10	28229609	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	205973	28229609	107305138	2845	28532										
LYZL2	0	genome.wustl.edu	37	chr10	30915044	30915044	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagcctcacctgagcaggcGacgtggcagtggttgttctc	14	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	30915044	30915044	G	A	SNP	LYZL2	ENST00000375318	human	ensembl	69_37n	-1	known	silent	c.426	p.V142	0.932	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL2	HGNC	ENSG00000151033	278	0	0	113	39	25.66	-	-	-	A	30915044	G	A	30915044	2	1	275	1	0	0	0	0	0	0	0	1	9199	1045	37	1		1	LYZL2	10	30915044	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2685435	30915044	104619703	2846	28533										
ARHGAP12	0	genome.wustl.edu	37	chr10	32096536	32096536	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacattgtgtataaacatttGaaatctgatggaatccagct	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	32096536	32096536	G	T	SNP	ARHGAP12	ENST00000492028	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.081	-	-	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	72	0	0	56	9	13.85	-	-	-	T	32096536	G	T	32096536	1	4	275	0	1	0	0	0	0	0	0	0	867	1305	45	2		2	ARHGAP12	10	32096536	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1181492	32096536	103438211	2847	28534										
CCDC7	0	genome.wustl.edu	37	chr10	32740653	32740653	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactaaaaaaggactacataAtttaccattatcacctgagc	4	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	32740653	32740653	A	C	SNP	CCDC7	ENST00000277657	human	ensembl	69_37n	1	known	missense	c.83	p.N28T	0.000	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	167	0	0	83	34	29.06	-	-	-	C	32740653	A	C	32740653	3	2	275	1	0	0	0	0	1	0	0	0	2869	101	4	5	85	5	CCDC7	10	32740653	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	644117	32740653	102794094	2848	28535										
CCDC7	0	genome.wustl.edu	37	chr10	32740682	32740682	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcacctgagctaaaggaaAaacataatgcaaaattaatt	5	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	32740682	32740682	A	C	SNP	CCDC7	ENST00000277657	human	ensembl	69_37n	1	known	missense	c.112	p.K38Q	0.078	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	177	0	0	78	31	28.44	-	-	-	C	32740682	A	C	32740682	3	2	275	1	0	0	0	0	1	0	0	0	2869	15	1	5	114	5	CCDC7	10	32740682	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	29	32740682	102794065	2849	28536										
C10orf68	0	genome.wustl.edu	37	chr10	33018264	33018264	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttttttctatttagcgttTcctttagaaatcaaaaaaaa	3	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	33018264	33018264	T	C	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	silent	c.705	p.F235	0.109	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	100	0	0	64	9	12.33	-	-	-	C	33018264	T	C	33018264	2	2	275	1	0	0	0	0	0	0	0	1	1623	1780	62	5		5	C10orf68	10	33018264	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	277582	33018264	102516483	2850	28537										
CREM	0	genome.wustl.edu	37	chr10	35437567	35437567	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattgtgaagaaaagatacGtgttgtaattagccttgcat	10	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	35437567	35437567	G	A	SNP	CREM	ENST00000482646	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CREM	HGNC	ENSG00000095794	35	0	0	24	7	22.58	-	-	-	A	35437567	G	A	35437567	1	1	275	0	1	0	0	0	0	0	0	0	3898	1160	40	1		1	CREM	10	35437567	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2419303	35437567	100097180	2851	28538										
ANKRD30A	0	genome.wustl.edu	37	chr10	37431191	37431191	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattgcatgtcctacaaaaGaatcatctacaaaagcaagt	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	37431191	37431191	G	T	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	nonsense	c.1198	p.E400*	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	74	0	0	49	13	20.97	-	-	-	T	37431191	G	T	37431191	4	4	275	1	0	0	0	0	0	1	0	0	658	943	33	2	1224	2	ANKRD30A	10	37431191	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1993624	37431191	98103556	2852	28539										
ZNF248	0	genome.wustl.edu	37	chr10	38121837	38121837	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taataattaagcccgaaataTttttcaaattcatttcacat	2	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	38121837	38121837	T	G	SNP	ZNF248	ENST00000357328	human	ensembl	69_37n	-1	known	missense	c.446	p.N149T	0.456	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105	156	0	0	132	19	12.58	-	-	-	G	38121837	T	G	38121837	3	3	275	1	0	0	0	0	1	0	0	0	17889	1493	52	5	1297	5	ZNF248	10	38121837	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	690646	38121837	97412910	2853	28540										
ZNF25	0	genome.wustl.edu	37	chr10	38241425	38241425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctcccctgtgtgagttCgctgatgtactgtgagggct	13	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	38241425	38241425	C	T	SNP	ZNF25	ENST00000302609	human	ensembl	69_37n	-1	known	missense	c.1001	p.R334Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395	193	1	0.51	202	50	19.84	-	-	-	T	38241425	C	T	38241425	3	4	275	1	0	0	0	0	1	0	0	0	17890	884	31	1	373	1	ZNF25	10	38241425	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	119588	38241425	97293322	2854	28541										
ZNF25	0	genome.wustl.edu	37	chr10	38241539	38241539	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgaggtgtgaattcctaGagaagaatttcccacattcc	8	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	38241539	38241539	G	A	SNP	ZNF25	ENST00000302609	human	ensembl	69_37n	-1	known	missense	c.887	p.S296F	0.066	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395	163	0	0	153	68	30.77	-	-	-	A	38241539	G	A	38241539	3	1	275	1	0	0	0	0	1	0	0	0	17890	942	33	2	487	2	ZNF25	10	38241539	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	114	38241539	97293208	2855	28542										
ZNF37A	0	genome.wustl.edu	37	chr10	38407035	38407035	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacctcattaaacatcaaaGaattcatacaggggagagac	8	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	38407035	38407035	G	T	SNP	ZNF37A	ENST00000351773	human	ensembl	69_37n	1	known	missense	c.956	p.R319I	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407	128	0	0	97	35	26.52	-	-	-	T	38407035	G	T	38407035	3	4	275	1	0	0	0	0	1	0	0	0	17968	942	33	2	970	2	ZNF37A	10	38407035	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	165496	38407035	97127712	2856	28543										
ZNF33B	0	genome.wustl.edu	37	chr10	43089791	43089791	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctgcaaagtgttctcacGatgactcagagtgttcctat	9	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	43089791	43089791	G	A	SNP	ZNF33B	ENST00000359467	human	ensembl	69_37n	-1	known	missense	c.607	p.R203C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693	152	0	0	123	40	24.54	-	-	-	A	43089791	G	A	43089791	3	1	275	1	0	0	0	0	1	0	0	0	17951	1058	37	1	1733	1	ZNF33B	10	43089791	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4682756	43089791	92444956	2857	28544										
CSGALNACT2	0	genome.wustl.edu	37	chr10	43651251	43651251	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatttaatgaaaatgacttCgtagaaggtaatgtgaaaaa	8	2	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	43651251	43651251	C	T	SNP	CSGALNACT2	ENST00000374466	human	ensembl	69_37n	1	known	silent	c.654	p.F218	0.720	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826	37	0	0	29	12	29.27	-	-	-	T	43651251	C	T	43651251	2	4	275	1	0	0	0	0	0	0	0	1	3971	883	31	1		1	CSGALNACT2	10	43651251	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	561460	43651251	91883496	2858	28545										
CSGALNACT2	0	genome.wustl.edu	37	chr10	43659456	43659456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatatctatttctcagccGaattccttaacagctgccgg	7	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	43659456	43659456	G	A	SNP	CSGALNACT2	ENST00000374466	human	ensembl	69_37n	1	known	missense	c.1123	p.E375K	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826	779	1	0.13	448	162	26.3	-	-	-	A	43659456	G	A	43659456	3	1	275	1	0	0	0	0	1	0	0	0	3971	1059	37	1	1137	1	CSGALNACT2	10	43659456	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8205	43659456	91875291	2859	28546										
ZNF485	0	genome.wustl.edu	37	chr10	44111818	44111818	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgttctgggagagcgaacGaaaagtgtcatgatggaaaa	13	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	44111818	44111818	G	A	SNP	ZNF485	ENST00000361807	human	ensembl	69_37n	1	known	silent	c.327	p.T109	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	124	0	0	77	10	11.49	-	-	-	A	44111818	G	A	44111818	2	1	275	1	0	0	0	0	0	0	0	1	18034	1045	37	1		1	ZNF485	10	44111818	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	452362	44111818	91422929	2860	28547										
ZNF32	0	genome.wustl.edu	37	chr10	44140114	44140114	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctttgtctcactccaggtGaatcttcctgtagtgtcttc	7	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	44140114	44140114	G	T	SNP	ZNF32	ENST00000374433	human	ensembl	69_37n	-1	known	nonsense	c.206	p.S69*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF32	HGNC	ENSG00000169740	94	0	0	69	26	27.37	-	-	-	T	44140114	G	T	44140114	4	4	275	1	0	0	0	0	0	1	0	0	17934	1294	45	2	619	2	ZNF32	10	44140114	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28296	44140114	91394633	2861	28548										
PPYR1	0	genome.wustl.edu	37	chr10	47086824	47086824	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccttgctgctcccaaaatCtccacaaggtgaaaacagaa	8	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	47086824	47086824	C	T	SNP	PPYR1	ENST00000374312	human	ensembl	69_37n	1	known	missense	c.41	p.S14F	0.000	prints_NPY4_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_NPY4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PPYR1	HGNC	ENSG00000204174	414	0	0	245	29	10.58	-	-	-	T	47086824	C	T	47086824	3	4	275	1	0	0	0	0	1	0	0	0	12493	913	32	2	43	2	PPYR1	10	47086824	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2946710	47086824	88447923	2862	28549										
GDF10	0	genome.wustl.edu	37	chr10	48428695	48428695	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtaggcatcaaaagatttCggtgagattatccattcatt	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	48428695	48428695	C	A	SNP	GDF10	ENST00000224605	human	ensembl	69_37n	-1	known	silent	c.1191	p.P397	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623	69	0	0	43	13	23.21	-	-	-	A	48428695	C	A	48428695	2	1	275	1	0	0	0	0	0	0	0	1	6363	871	31	3		3	GDF10	10	48428695	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1341871	48428695	87106052	2863	28550										
FRMPD2	0	genome.wustl.edu	37	chr10	49386161	49386161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatttcaccagcactgatttCtggaggtgatggaggacaag	13	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	49386161	49386161	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2824	p.E942K	0.108	superfamily_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	59	0	0	74	11	12.94	-	-	-	T	49386161	C	T	49386161	3	4	275	1	0	0	0	0	1	0	0	0	6107	922	32	2	1137	2	FRMPD2	10	49386161	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	957466	49386161	86148586	2864	28551										
C10orf128	0	genome.wustl.edu	37	chr10	50363785	50363785	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacagaggcactgtatattCtattccttctattatttgcc	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50363785	50363785	C	A	SNP	C10orf128	ENST00000488276	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C10orf128	HGNC	ENSG00000204161	44	0	0	51	13	20.31	-	-	-	A	50363785	C	A	50363785	1	1	275	0	1	0	0	0	0	0	0	0	1602	928	32	2		2	C10orf128	10	50363785	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	977624	50363785	85170962	2865	28552										
C10orf71	0	genome.wustl.edu	37	chr10	50532196	50532196	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaaggttgatggaaagcaaGaacctgtgagcaacggtgtc	14	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50532196	50532196	G	T	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	nonsense	c.1606	p.E536*	0.583	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	168	0	0	74	22	22.68	-	-	-	T	50532196	G	T	50532196	4	4	275	1	0	0	0	0	0	1	0	0	1624	943	33	2	1608	2	C10orf71	10	50532196	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	168411	50532196	85002551	2866	28553										
C10orf71	0	genome.wustl.edu	37	chr10	50533651	50533651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccacccccatggcagcccGaaaactgttgggaagagcaa	11	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50533651	50533651	G	A	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.3061	p.E1021K	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	150	0	0	95	12	11.21	-	-	-	A	50533651	G	A	50533651	3	1	275	1	0	0	0	0	1	0	0	0	1624	1059	37	1	3063	1	C10orf71	10	50533651	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1455	50533651	85001096	2867	28554										
DRGX	0	genome.wustl.edu	37	chr10	50599253	50599253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttccggcgctgttttctaCgcagaaacccgtcatcaaaa	9	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50599253	50599253	C	T	SNP	DRGX	ENST00000434016	human	ensembl	69_37n	-1	known	missense	c.104	p.R35H	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DRGX	HGNC	ENSG00000165606	112	0	0	70	10	12.5	-	-	-	T	50599253	C	T	50599253	3	4	275	1	0	0	0	0	1	0	0	0	4798	536	19	1	721	1	DRGX	10	50599253	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	65602	50599253	84935494	2868	28555										
ERCC6	0	genome.wustl.edu	37	chr10	50678264	50678264	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttccaaaacataatcgtCattgctctgttccttggcct	5	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50678264	50678264	C	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.3742	p.D1248Y	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	911	0	0	640	80	11.1	-	-	-	A	50678264	C	A	50678264	3	1	275	1	0	0	0	0	1	0	0	0	5254	826	29	2	755	2	ERCC6	10	50678264	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	79011	50678264	84856483	2869	28556										
PGBD3	0	genome.wustl.edu	37	chr10	50723441	50723441	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacatcacatttttcacatcGaaaagttgtgttcttatgac	5	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50723441	50723441	G	A	SNP	PGBD3	ENST00000374127	human	ensembl	69_37n	-1	known	nonsense	c.1720	p.R574*	0.004	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251	178	0	0	137	49	26.34	-	-	-	A	50723441	G	A	50723441	4	1	275	1	0	0	0	0	0	1	0	0	11856	1066	37	1	65	1	PGBD3	10	50723441	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45177	50723441	84811306	2870	28557										
PGBD3	0	genome.wustl.edu	37	chr10	50725153	50725153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcatgtaaacttagtgttCgaggcatcttgggactaaaa	9	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50725153	50725153	C	T	SNP	PGBD3	ENST00000374127	human	ensembl	69_37n	-1	known	missense	c.8	p.R3Q	0.995	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251	144	1	0.68	128	27	17.42	-	-	-	T	50725153	C	T	50725153	3	4	275	1	0	0	0	0	1	0	0	0	11856	884	31	1	1777	1	PGBD3	10	50725153	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1712	50725153	84809594	2871	28558										
ERCC6	0	genome.wustl.edu	37	chr10	50732662	50732662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatctgccaaatacttttCgaagcctgatgcttcattaa	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	50732662	50732662	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.814	p.E272K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	298	0	0	311	51	14.09	-	-	-	T	50732662	C	T	50732662	3	4	275	1	0	0	0	0	1	0	0	0	5254	893	31	1	3735	1	ERCC6	10	50732662	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7509	50732662	84802085	2872	28559										
AGAP7	0	genome.wustl.edu	37	chr10	51472612	51472612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcatcaaggaatattgtcGaacacaagctgtattgttga	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	51472612	51472612	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.368	p.S123L	0.967	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	91	0	0	46	22	32.35	-	-	-	A	51472612	G	A	51472612	3	1	275	1	0	0	0	0	1	0	0	0	373	1059	37	1	1639	1	AGAP7	10	51472612	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	739950	51472612	84062135	2873	28560										
CSTF2T	0	genome.wustl.edu	37	chr10	53458304	53458304	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagtccctccacgtgggtCatttggagcatctcctaaca	8	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	53458304	53458304	C	A	SNP	CSTF2T	ENST00000331173	human	ensembl	69_37n	-1	known	missense	c.1006	p.D336Y	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	91	0	0	58	8	12.12	-	-	-	A	53458304	C	A	53458304	3	1	275	1	0	0	0	0	1	0	0	0	4017	826	29	2	848	2	CSTF2T	10	53458304	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1985692	53458304	82076443	2874	28561										
DKK1	0	genome.wustl.edu	37	chr10	54074676	54074676	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccctctccccgaacccttCccacagccgtacccgtgcgc	6	23	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	54074676	54074676	C	T	SNP	DKK1	ENST00000467359	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.297	-	-	-	no_errors	DKK1	HGNC	ENSG00000107984	37	0	0	12	4	25	-	-	-	T	54074676	C	T	54074676	1	4	275	0	1	0	0	0	0	0	0	0	4580	870	30	2		2	DKK1	10	54074676	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	616372	54074676	81460071	2875	28562										
PCDH15	0	genome.wustl.edu	37	chr10	55568568	55568568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacctccagactgactttCgctactactgctactactac	6	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	55568568	55568568	C	T	SNP	PCDH15	ENST00000395445	human	ensembl	69_37n	-1	novel	missense	c.5242	p.E1748K	0.697	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	428	0	0	212	74	25.87	-	-	-	T	55568568	C	T	55568568	3	4	275	1	0	0	0	0	1	0	0	0	11584	893	31	1	674	1	PCDH15	10	55568568	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1493892	55568568	79966179	2876	28563										
PCDH15	0	genome.wustl.edu	37	chr10	55582522	55582522	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaagagtctgaagagagaGatttcaactgttctgttcct	10	6	3	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	55582522	55582522	G	T	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.4964	p.S1655Y	0.004	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	291	0	0	171	65	27.54	-	-	-	T	55582522	G	T	55582522	3	4	275	1	0	0	0	0	1	0	0	0	11584	942	33	2	2513	2	PCDH15	10	55582522	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13954	55582522	79952225	2877	28564										
IPMK	0	genome.wustl.edu	37	chr10	59956182	59956182	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagactctatttttccattAgctgtggaacttaacacatg	7	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	59956182	59956182	A	C	SNP	IPMK	ENST00000373935	human	ensembl	69_37n	-1	known	silent	c.906	p.A302	0.000	pfam_IPK	pfam_IPK	-	no_errors	IPMK	HGNC	ENSG00000151151	133	0	0	96	13	11.93	-	-	-	C	59956182	A	C	59956182	2	2	275	1	0	0	0	0	0	0	0	1	7846	407	15	5		5	IPMK	10	59956182	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	4373660	59956182	75578565	2878	28565										
UBE2D1	0	genome.wustl.edu	37	chr10	60127761	60127761	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatattgcacaaatctataAatcagacaaagaaaagtaag	6	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	60127761	60127761	A	C	SNP	UBE2D1	ENST00000373910	human	ensembl	69_37n	1	known	missense	c.383	p.K128T	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D1	HGNC	ENSG00000072401	488	0	0	299	102	25.44	-	-	-	C	60127761	A	C	60127761	3	2	275	1	0	0	0	0	1	0	0	0	16945	14	1	5	405	5	UBE2D1	10	60127761	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	171579	60127761	75406986	2879	28566										
ANK3	0	genome.wustl.edu	37	chr10	61830574	61830574	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttccagttctttctggttGgaagccttttcagcagaagc	9	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	61830574	61830574	G	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	silent	c.10065	p.S3355	0.053	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	358	0	0	231	80	24.39	-	-	-	T	61830574	G	T	61830574	2	4	275	1	0	0	0	0	0	0	0	1	622	1335	47	4		4	ANK3	10	61830574	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1702813	61830574	73704173	2880	28567										
ANK3	0	genome.wustl.edu	37	chr10	61832853	61832853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcttttcagttttgtcacGaaaaaactgtgacacttcag	7	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	61832853	61832853	G	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.7786	p.R2596C	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	60	0	0	59	8	11.94	-	-	-	A	61832853	G	A	61832853	3	1	275	1	0	0	0	0	1	0	0	0	622	1058	37	1	5688	1	ANK3	10	61832853	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2279	61832853	73701894	2881	28568										
ANK3	0	genome.wustl.edu	37	chr10	61844966	61844966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcttttataaacgtcaaaGgagttgttcctgtgatgtct	8	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	61844966	61844966	G	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.3794	p.P1265H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	147	0	0	112	16	12.5	-	-	-	T	61844966	G	T	61844966	3	4	275	1	0	0	0	0	1	0	0	0	622	1000	35	4	9704	4	ANK3	10	61844966	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12113	61844966	73689781	2882	28569										
ANK3	0	genome.wustl.edu	37	chr10	61894114	61894114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaggtgtaagacctatccGaactgaaggagcggaggctg	14	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	61894114	61894114	G	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.2756	p.S919L	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	308	0	0	163	53	24.54	-	-	-	A	61894114	G	A	61894114	3	1	275	1	0	0	0	0	1	0	0	0	622	1059	37	1	10766	1	ANK3	10	61894114	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49148	61894114	73640633	2883	28570										
ANK3	0	genome.wustl.edu	37	chr10	61965607	61965607	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagttccattactttaatTcgattcttcttgcaggcaat	7	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	61965607	61965607	T	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	silent	c.1236	p.R412	0.987	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	298	0	0	237	35	12.87	-	-	-	C	61965607	T	C	61965607	2	2	275	1	0	0	0	0	0	0	0	1	622	1770	62	5		5	ANK3	10	61965607	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	71493	61965607	73569140	2884	28571										
CDK1	0	genome.wustl.edu	37	chr10	62553663	62553663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatctatgatccagccaaacGaatttctggcaaaatggcac	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	62553663	62553663	G	A	SNP	CDK1	ENST00000395284	human	ensembl	69_37n	1	known	missense	c.824	p.R275Q	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK1	HGNC	ENSG00000170312	150	1	0.66	95	27	22.13	-	-	-	A	62553663	G	A	62553663	3	1	275	1	0	0	0	0	1	0	0	0	3153	1058	37	1	862	1	CDK1	10	62553663	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	588056	62553663	72981084	2885	28572										
RTKN2	0	genome.wustl.edu	37	chr10	64022543	64022543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatattccttctcgcattCgaatttctaagtctattttt	3	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	64022543	64022543	C	T	SNP	RTKN2	ENST00000373789	human	ensembl	69_37n	-1	known	missense	c.98	p.R33Q	1.000	superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	242	0	0	133	26	16.35	-	-	-	T	64022543	C	T	64022543	3	4	275	1	0	0	0	0	1	0	0	0	13809	884	31	1	1775	1	RTKN2	10	64022543	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1468880	64022543	71512204	2886	28573										
JMJD1C	0	genome.wustl.edu	37	chr10	64944409	64944409	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctagatcaggacgtacaAaaaatcctggcaaatgagag	10	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	64944409	64944409	A	C	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.6920	p.F2307C	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	262	0	0	179	26	12.68	-	-	-	C	64944409	A	C	64944409	3	2	275	1	0	0	0	0	1	0	0	0	8004	14	1	5	726	5	JMJD1C	10	64944409	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	921866	64944409	70590338	2887	28574										
JMJD1C	0	genome.wustl.edu	37	chr10	64967384	64967384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgattcttccagtttctcCggcttctgctagtttgaggc	9	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	64967384	64967384	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.4045	p.G1349R	0.998	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	111	0	0	77	35	31.25	-	-	-	T	64967384	C	T	64967384	3	4	275	1	0	0	0	0	1	0	0	0	8004	661	23	1	3645	1	JMJD1C	10	64967384	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22975	64967384	70567363	2888	28575										
JMJD1C	0	genome.wustl.edu	37	chr10	64968092	64968092	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accgtaaatatttgaaacttCtttggatgggtatgatcttg	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	64968092	64968092	C	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	nonsense	c.3337	p.E1113*	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	141	0	0	85	42	33.07	-	-	-	A	64968092	C	A	64968092	4	1	275	1	0	0	0	0	0	1	0	0	8004	922	32	2	4353	2	JMJD1C	10	64968092	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	708	64968092	70566655	2889	28576										
JMJD1C	0	genome.wustl.edu	37	chr10	64974825	64974825	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctgaaacattgtcagttcGaagtcttttcatatttagtt	7	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	64974825	64974825	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	nonsense	c.1102	p.R368*	0.997	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	270	0	0	165	41	19.9	-	-	-	A	64974825	G	A	64974825	4	1	275	1	0	0	0	0	0	1	0	0	8004	1066	37	1	6596	1	JMJD1C	10	64974825	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6733	64974825	70559922	2890	28577										
HERC4	0	genome.wustl.edu	37	chr10	69773908	69773908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagcccaaaagagtaaattCgtcctgatgaaggaacaaaa	8	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	69773908	69773908	C	T	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	missense	c.944	p.R315Q	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	229	0	0	158	25	13.66	-	-	-	T	69773908	C	T	69773908	3	4	275	1	0	0	0	0	1	0	0	0	7111	884	31	1	2301	1	HERC4	10	69773908	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4799083	69773908	65760839	2891	28578										
MYPN	0	genome.wustl.edu	37	chr10	69881327	69881327	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccaacccttgccatttCggcagtccttctggggccgc	9	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	69881327	69881327	C	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	silent	c.132	p.F44	0.032	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	59	0	0	34	30	46.88	-	-	-	T	69881327	C	T	69881327	2	4	275	1	0	0	0	0	0	0	0	1	10170	883	31	1		1	MYPN	10	69881327	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	107419	69881327	65653420	2892	28579										
MYPN	0	genome.wustl.edu	37	chr10	69934251	69934251	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaccattcacattttccaTccccagcggaaaccagtttc	4	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	69934251	69934251	T	G	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	missense	c.2402	p.I801S	0.492	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	234	0	0	167	46	21.5	-	-	-	G	69934251	T	G	69934251	3	3	275	1	0	0	0	0	1	0	0	0	10170	1435	50	5	2440	5	MYPN	10	69934251	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	52924	69934251	65600496	2893	28580										
HNRNPH3	0	genome.wustl.edu	37	chr10	70097039	70097039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatgggacagtacgacttCgtggactaccatttggttgc	13	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70097039	70097039	C	T	SNP	HNRNPH3	ENST00000265866	human	ensembl	69_37n	1	known	missense	c.61	p.R21C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746	226	1	0.44	198	28	12.39	-	-	-	T	70097039	C	T	70097039	3	4	275	1	0	0	0	0	1	0	0	0	7319	884	31	1	63	1	HNRNPH3	10	70097039	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	162788	70097039	65437708	2894	28581										
RUFY2	0	genome.wustl.edu	37	chr10	70139143	70139143	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataaagaaaaagggaagaaGaaaagaaaaaaagaaactaa	8	1	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70139143	70139143	G	T	SNP	RUFY2	ENST00000491118	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RUFY2	HGNC	ENSG00000204130	171	0	0	158	20	11.05	-	-	-	T	70139143	G	T	70139143	1	4	275	0	1	0	0	0	0	0	0	0	13825	957	33	2		2	RUFY2	10	70139143	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42104	70139143	65395604	2895	28582										
RUFY2	0	genome.wustl.edu	37	chr10	70143578	70143578	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtaactgagattcatctcGaagctgccttctggcttcat	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70143578	70143578	G	A	SNP	RUFY2	ENST00000388768	human	ensembl	69_37n	-1	known	nonsense	c.1021	p.R341*	0.995	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130	192	0	0	105	34	24.46	-	-	-	A	70143578	G	A	70143578	4	1	275	1	0	0	0	0	0	1	0	0	13825	1066	37	1	1053	1	RUFY2	10	70143578	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4435	70143578	65391169	2896	28583										
TET1	0	genome.wustl.edu	37	chr10	70332649	70332649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctttacttaaaggtaagaGccaagagacaactcagtttt	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70332649	70332649	G	A	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.554	p.S185N	0.985	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	49	0	0	62	9	12.68	-	-	-	A	70332649	G	A	70332649	3	1	275	1	0	0	0	0	1	0	0	0	15864	971	34	4	556	4	TET1	10	70332649	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	189071	70332649	65202098	2897	28584										
TET1	0	genome.wustl.edu	37	chr10	70333079	70333079	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcctacctctgtaataaaAttcctcttggcaggctcaaa	5	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70333079	70333079	A	C	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.984	p.K328N	0.097	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	71	0	0	41	20	32.26	-	-	-	C	70333079	A	C	70333079	3	2	275	1	0	0	0	0	1	0	0	0	15864	98	4	5	986	5	TET1	10	70333079	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	430	70333079	65201668	2898	28585										
TET1	0	genome.wustl.edu	37	chr10	70333547	70333547	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatcatcatcaaactcagaGaaaaattcattacctccagt	3	11	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70333547	70333547	G	T	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.1452	p.E484D	0.682	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	56	0	0	46	8	14.81	-	-	-	T	70333547	G	T	70333547	3	4	275	1	0	0	0	0	1	0	0	0	15864	933	33	2	1454	2	TET1	10	70333547	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	468	70333547	65201200	2899	28586										
TET1	0	genome.wustl.edu	37	chr10	70405080	70405080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgagaatataccaagtaAagaaccaaaagatggatctc	7	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70405080	70405080	A	C	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.2594	p.K865T	0.008	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	208	0	0	132	36	21.43	-	-	-	C	70405080	A	C	70405080	3	2	275	1	0	0	0	0	1	0	0	0	15864	14	1	5	2604	5	TET1	10	70405080	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	71533	70405080	65129667	2900	28587										
CCAR1	0	genome.wustl.edu	37	chr10	70520782	70520782	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtaaatgacctccgaaaaGaattagaaagtcgagctctt	9	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70520782	70520782	G	T	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	nonsense	c.1939	p.E647*	1.000	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	130	0	0	71	37	34.26	-	-	-	T	70520782	G	T	70520782	4	4	275	1	0	0	0	0	0	1	0	0	2755	943	33	2	1997	2	CCAR1	10	70520782	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	115702	70520782	65013965	2901	28588										
CCAR1	0	genome.wustl.edu	37	chr10	70520795	70520795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgaaaagaattagaaagtcGagctcttagttccaaaggat	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70520795	70520795	G	A	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.1952	p.R651Q	1.000	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	159	0	0	101	36	26.09	-	-	-	A	70520795	G	A	70520795	3	1	275	1	0	0	0	0	1	0	0	0	2755	1058	37	1	2010	1	CCAR1	10	70520795	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13	70520795	65013952	2902	28589										
KIAA1279	0	genome.wustl.edu	37	chr10	70775995	70775995	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcattactgcagatcccaaGaaagagctggaaaatttggc	9	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70775995	70775995	G	T	SNP	KIAA1279	ENST00000361983	human	ensembl	69_37n	1	known	missense	c.1689	p.K563N	1.000	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	243	1	0.41	222	87	28.06	-	-	-	T	70775995	G	T	70775995	3	4	275	1	0	0	0	0	1	0	0	0	8273	933	33	2	1715	2	KIAA1279	10	70775995	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	255200	70775995	64758752	2903	28590										
SUPV3L1	0	genome.wustl.edu	37	chr10	70949174	70949174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactggcacatgagatcttcGaaaagagtaatgctgctgtc	10	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70949174	70949174	G	A	SNP	SUPV3L1	ENST00000359655	human	ensembl	69_37n	1	known	missense	c.724	p.E242K	1.000	NULL	pfam_SUV3_C,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	-	no_errors	SUPV3L1	HGNC	ENSG00000156502	113	0	0	104	24	18.75	-	-	-	A	70949174	G	A	70949174	3	1	275	1	0	0	0	0	1	0	0	0	15493	1059	37	1	742	1	SUPV3L1	10	70949174	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	173179	70949174	64585573	2904	28591										
SUPV3L1	0	genome.wustl.edu	37	chr10	70956768	70956768	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactgtgtgctgaagaggttCatttgtgtggagaacctgct	14	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	70956768	70956768	C	A	SNP	SUPV3L1	ENST00000359655	human	ensembl	69_37n	1	known	missense	c.952	p.H318N	1.000	NULL	pfam_SUV3_C,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	-	no_errors	SUPV3L1	HGNC	ENSG00000156502	370	0	0	288	34	10.56	-	-	-	A	70956768	C	A	70956768	3	1	275	1	0	0	0	0	1	0	0	0	15493	826	29	2	982	2	SUPV3L1	10	70956768	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7594	70956768	64577979	2905	28592										
HKDC1	0	genome.wustl.edu	37	chr10	71002966	71002966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaatgcgtgttacatggaGgacatgagcaacattgacct	10	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	71002966	71002966	G	T	SNP	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	missense	c.720	p.E240D	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	191	0	0	124	45	26.63	-	-	-	T	71002966	G	T	71002966	3	4	275	1	0	0	0	0	1	0	0	0	7244	991	35	4	746	4	HKDC1	10	71002966	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46198	71002966	64531781	2906	28593										
COL13A1	0	genome.wustl.edu	37	chr10	71682481	71682481	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggagagaaaggcgatgcTggcaactccattggaggagg	17	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	71682481	71682481	T	G	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	silent	c.1128	p.A376	0.966	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	78	0	0	33	13	28.26	-	-	-	G	71682481	T	G	71682481	2	3	275	1	0	0	0	0	0	0	0	1	3700	1567	55	5		5	COL13A1	10	71682481	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	679515	71682481	63852266	2907	28594										
PPA1	0	genome.wustl.edu	37	chr10	71977630	71977630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacaaattcgcaacatagcGaagttttccttttttcacat	5	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	71977630	71977630	G	A	SNP	PPA1	ENST00000373232	human	ensembl	69_37n	-1	known	missense	c.235	p.R79C	1.000	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA1	HGNC	ENSG00000180817	284	0	0	197	34	14.66	-	-	-	A	71977630	G	A	71977630	3	1	275	1	0	0	0	0	1	0	0	0	12359	1058	37	1	666	1	PPA1	10	71977630	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	295149	71977630	63557117	2908	28595										
ADAMTS14	0	genome.wustl.edu	37	chr10	72495020	72495020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaatggatgagcagtgccGctttgactttggcagtggct	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	72495020	72495020	G	A	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.1457	p.R486H	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	49	0	0	25	5	16.13	-	-	-	A	72495020	G	A	72495020	3	1	275	1	0	0	0	0	1	0	0	0	259	1087	38	1	1491	1	ADAMTS14	10	72495020	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	517390	72495020	63039727	2909	28596										
SGPL1	0	genome.wustl.edu	37	chr10	72604297	72604297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccaagaattatgtaaatgGacattgcaccaagtatgagc	9	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	72604297	72604297	G	A	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	1	known	missense	c.95	p.G32E	0.997	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	368	0	0	370	45	10.82	-	-	-	A	72604297	G	A	72604297	3	1	275	1	0	0	0	0	1	0	0	0	14306	1174	41	2	101	2	SGPL1	10	72604297	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	109277	72604297	62930450	2910	28597										
CDH23	0	genome.wustl.edu	37	chr10	73270737	73270737	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagagttcaccgtggagttCtctgtcagcgaccaccaggg	12	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	73270737	73270737	C	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.315	p.F105L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	143	0	0	68	16	19.05	-	-	-	A	73270737	C	A	73270737	3	1	275	1	0	0	0	0	1	0	0	0	3137	912	32	2	329	2	CDH23	10	73270737	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	666440	73270737	62264010	2911	28598										
DNAJC9	0	genome.wustl.edu	37	chr10	75006531	75006531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtccactgttccctgctcaTcgtacactgctctctgttct	6	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	75006531	75006531	T	C	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.236	p.D79G	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	159	0	0	70	17	19.54	-	-	-	C	75006531	T	C	75006531	3	2	275	1	0	0	0	0	1	0	0	0	4691	1435	50	5	562	5	DNAJC9	10	75006531	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1735794	75006531	60528216	2912	28599										
FUT11	0	genome.wustl.edu	37	chr10	75533329	75533329	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggcatcaccaaccaatttCttctggatagtctgaagcat	9	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	75533329	75533329	C	A	SNP	FUT11	ENST00000372841	human	ensembl	69_37n	1	known	missense	c.1090	p.L364I	1.000	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT11	HGNC	ENSG00000196968	146	0	0	112	16	12.5	-	-	-	A	75533329	C	A	75533329	3	1	275	1	0	0	0	0	1	0	0	0	6152	913	32	2	1096	2	FUT11	10	75533329	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	526798	75533329	60001418	2913	28600										
AP3M1	0	genome.wustl.edu	37	chr10	75886111	75886111	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catacactggtattgccactAgactaaaaagagaaacagag	8	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	75886111	75886111	A	C	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.806	p.L269R	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	137	0	0	113	19	14.39	-	-	-	C	75886111	A	C	75886111	3	2	275	1	0	0	0	0	1	0	0	0	748	420	15	5	462	5	AP3M1	10	75886111	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	352782	75886111	59648636	2914	28601										
VDAC2	0	genome.wustl.edu	37	chr10	76982111	76982111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaggtaccaactgcactcGttttggcattgcagctaaat	8	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	76982111	76982111	G	A	SNP	VDAC2	ENST00000313132	human	ensembl	69_37n	1	known	missense	c.731	p.R244H	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC2	HGNC	ENSG00000165637	181	0	0	167	22	11.64	-	-	-	A	76982111	G	A	76982111	3	1	275	1	0	0	0	0	1	0	0	0	17244	1145	40	1	792	1	VDAC2	10	76982111	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1096000	76982111	58552636	2915	28602										
C10orf11	0	genome.wustl.edu	37	chr10	77795833	77795833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacaacaatcagctggggGacgaccttgtgttgccaggg	15	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	77795833	77795833	G	A	SNP	C10orf11	ENST00000354343	human	ensembl	69_37n	1	known	missense	c.199	p.D67N	0.983	NULL	NULL	-	no_errors	C10orf11	HGNC	ENSG00000148655	211	0	0	158	28	14.97	-	-	-	A	77795833	G	A	77795833	3	1	275	1	0	0	0	0	1	0	0	0	1592	1174	41	2	121	2	C10orf11	10	77795833	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	813722	77795833	57738914	2916	28603										
KCNMA1	0	genome.wustl.edu	37	chr10	78943194	78943194	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaccaagccaacttctgtTtaagtacacagacacaaaca	4	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	78943194	78943194	T	G	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.793	p.N265H	1.000	pfam_Ion_trans_dom	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	403	0	0	272	38	12.26	-	-	-	G	78943194	T	G	78943194	3	3	275	1	0	0	0	0	1	0	0	0	8127	1841	64	5	3185	5	KCNMA1	10	78943194	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1147361	78943194	56591553	2917	28604										
DLG5	0	genome.wustl.edu	37	chr10	79595617	79595617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcacagagccttgcactGctttcgaaggatttcaacct	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	79595617	79595617	G	C	SNP	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	missense	c.1501	p.Q501E	1.000	NULL	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	98	0	0	70	14	16.47	-	-	-	C	79595617	G	C	79595617	3	2	275	1	0	0	0	0	1	0	0	0	4594	1328	46	4	4358	4	DLG5	10	79595617	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	652423	79595617	55939130	2918	28605										
NRG3	0	genome.wustl.edu	37	chr10	84745272	84745272	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagcgaaaacacagcctttCtccccctgagtcccacagcc	6	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	84745272	84745272	C	A	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	missense	c.2074	p.L692I	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	153	0	0	77	30	28.04	-	-	-	A	84745272	C	A	84745272	3	1	275	1	0	0	0	0	1	0	0	0	10722	913	32	2	2280	2	NRG3	10	84745272	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5149655	84745272	50789475	2919	28606										
FAM190B	0	genome.wustl.edu	37	chr10	86131788	86131788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctctactgaaatctagccGatctccattttctgggacta	6	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	86131788	86131788	G	A	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.980	p.R327Q	0.998	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	109	0	0	81	31	27.68	-	-	-	A	86131788	G	A	86131788	3	1	275	1	0	0	0	0	1	0	0	0	5564	1058	37	1	982	1	FAM190B	10	86131788	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1386516	86131788	49402959	2920	28607										
GLUD1	0	genome.wustl.edu	37	chr10	88818924	88818924	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgagcaagtggtagttaGaatccctttcatatttgaag	9	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	88818924	88818924	G	T	SNP	GLUD1	ENST00000277865	human	ensembl	69_37n	-1	known	missense	c.1385	p.S462Y	1.000	smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD1	HGNC	ENSG00000148672	236	0	0	127	46	26.59	-	-	-	T	88818924	G	T	88818924	3	4	275	1	0	0	0	0	1	0	0	0	6528	942	33	2	307	2	GLUD1	10	88818924	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2687136	88818924	46715823	2921	28608										
GLUD1	0	genome.wustl.edu	37	chr10	88820356	88820356	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaataaagctgctaaaaaGaaagagaaaactcaatcaga	7	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	88820356	88820356	G	T	SNP	GLUD1	ENST00000465164	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	GLUD1	HGNC	ENSG00000148672	177	0	0	111	31	21.83	-	-	-	T	88820356	G	T	88820356	1	4	275	0	1	0	0	0	0	0	0	0	6528	957	33	2		2	GLUD1	10	88820356	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1432	88820356	46714391	2922	28609										
PAPSS2	0	genome.wustl.edu	37	chr10	89473804	89473804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatattgcttttcaggatCgtgagaatgcccgcaaaata	8	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	89473804	89473804	C	T	SNP	PAPSS2	ENST00000456849	human	ensembl	69_37n	1	known	missense	c.385	p.R129C	1.000	pfam_APS_kinase,tigrfam_APS_kinase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	94	0	0	56	11	16.42	-	-	-	T	89473804	C	T	89473804	3	4	275	1	0	0	0	0	1	0	0	0	11508	884	31	1	399	1	PAPSS2	10	89473804	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	653448	89473804	46060943	2923	28610										
PAPSS2	0	genome.wustl.edu	37	chr10	89503294	89503294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgatgtgcctctagactggCggatgaagcagcacgcggct	14	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	89503294	89503294	C	T	SNP	PAPSS2	ENST00000456849	human	ensembl	69_37n	1	known	missense	c.1387	p.R463W	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	181	0	0	114	34	22.97	-	-	-	T	89503294	C	T	89503294	3	4	275	1	0	0	0	0	1	0	0	0	11508	759	27	1	1429	1	PAPSS2	10	89503294	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29490	89503294	46031453	2924	28611										
PTEN	0	genome.wustl.edu	37	chr10	89685281	89685281	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttttaaggtttttggattCaaagcataaaaaccattaca	6	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	89685281	89685281	C	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.176	p.S59*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	258	0	0	161	52	24.3	-	-	-	A	89685281	C	A	89685281	4	1	275	1	0	0	0	0	0	1	0	0	12818	838	29	2	186	2	PTEN	10	89685281	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	181987	89685281	45849466	2925	28612										
LIPA	0	genome.wustl.edu	37	chr10	91005468	91005468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcctcccatgaggaattCggttaaggcacagaatatat	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	91005468	91005468	C	T	SNP	LIPA	ENST00000336233	human	ensembl	69_37n	-1	known	missense	c.194	p.R65Q	1.000	pfam_AB_hydrolase_lipase	pfam_AB_hydrolase_1,pfam_AB_hydrolase_lipase	-	no_errors	LIPA	HGNC	ENSG00000107798	184	0	0	94	13	12.15	-	-	-	T	91005468	C	T	91005468	3	4	275	1	0	0	0	0	1	0	0	0	8875	884	31	1	1037	1	LIPA	10	91005468	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1320187	91005468	44529279	2926	28613										
IFIT3	0	genome.wustl.edu	37	chr10	91099365	91099365	+	Missense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaatatgctatggactattCgaataaagctcttgagaagg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	91099365	91099365	C	T	SNP	IFIT3	ENST00000371811	human	ensembl	69_37n	1	known	missense	c.953	p.S318L	0.017	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917	119	0	0	95	15	13.64	-	-	-	T	91099365	C	T	91099365	3	4	275	1	0	0	0	0	1	0	0	0	7578	893	31	1	968	1	IFIT3	10	91099365	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	93897	91099365	44435382	2927	28614	242	2								
IFIT3	0	genome.wustl.edu	37	chr10	91099366	91099366	+	Silent	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatatgctatggactattcGaataaagctcttgagaaggg							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	91099366	91099366	G	A	SNP	IFIT3	ENST00000371811	human	ensembl	69_37n	1	known	silent	c.954	p.S318	0.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917	119	0	0	93	16	14.68	-	-	-	A	91099366	G	A	91099366	2	1	275	1	0	0	0	0	0	0	0	1	7578	1045	37	1		1	IFIT3	10	91099366	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1	91099366	44435381	2928	28615	242	2								
KIF20B	0	genome.wustl.edu	37	chr10	91486272	91486272	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagagttaaaaaagagaGaaaatggtaagtggatacat	11	1	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	91486272	91486272	G	T	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	nonsense	c.2224	p.E742*	0.858	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	123	0	0	81	11	11.96	-	-	-	T	91486272	G	T	91486272	4	4	275	1	0	0	0	0	0	1	0	0	8339	943	33	2	2162	2	KIF20B	10	91486272	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	386906	91486272	44048475	2929	28616										
KIF20B	0	genome.wustl.edu	37	chr10	91497828	91497828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttccaaaaaaagtcatcAgattgaggaactggaacaac	7	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	91497828	91497828	A	C	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	missense	c.3320	p.Q1107P	0.969	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	65	0	0	44	20	30.77	-	-	-	C	91497828	A	C	91497828	3	2	275	1	0	0	0	0	1	0	0	0	8339	188	7	5	3184	5	KIF20B	10	91497828	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	11556	91497828	44036919	2930	28617										
HTR7	0	genome.wustl.edu	37	chr10	92509171	92509171	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccactgcggtagagtaaatCgtatagccaaagtcctggct	11	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	92509171	92509171	C	T	SNP	HTR7	ENST00000336152	human	ensembl	69_37n	-1	known	silent	c.720	p.T240	0.055	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT_7_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680	181	0	0	130	47	26.55	-	-	-	T	92509171	C	T	92509171	2	4	275	1	0	0	0	0	0	0	0	1	7506	871	31	1		1	HTR7	10	92509171	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1011343	92509171	43025576	2931	28618										
HTR7	0	genome.wustl.edu	37	chr10	92617141	92617141	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaccaggcagttgcccgcGatcgtcagcagcgtgatgag	13	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	92617141	92617141	G	A	SNP	HTR7	ENST00000336152	human	ensembl	69_37n	-1	known	silent	c.288	p.I96	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT_7_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680	49	0	0	15	5	25	-	-	-	A	92617141	G	A	92617141	2	1	275	1	0	0	0	0	0	0	0	1	7506	1048	37	1		1	HTR7	10	92617141	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	107970	92617141	42917606	2932	28619										
PPP1R3C	0	genome.wustl.edu	37	chr10	93390585	93390585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacatccacgggcatgaccGaacttgtcaaaggacgtgga	11	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	93390585	93390585	G	A	SNP	PPP1R3C	ENST00000238994	human	ensembl	69_37n	-1	known	missense	c.53	p.S18L	0.999	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938	128	0	0	73	14	15.91	-	-	-	A	93390585	G	A	93390585	3	1	275	1	0	0	0	0	1	0	0	0	12450	1059	37	1	904	1	PPP1R3C	10	93390585	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	773444	93390585	42144162	2933	28620										
KIF11	0	genome.wustl.edu	37	chr10	94366413	94366413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacagattgatgtttaccGaagtgttgtttgtccaattc	8	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	94366413	94366413	G	A	SNP	KIF11	ENST00000260731	human	ensembl	69_37n	1	known	missense	c.248	p.R83Q	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160	457	0	0	257	111	30.08	-	-	-	A	94366413	G	A	94366413	3	1	275	1	0	0	0	0	1	0	0	0	8324	1058	37	1	258	1	KIF11	10	94366413	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	975828	94366413	41168334	2934	28621										
EXOC6	0	genome.wustl.edu	37	chr10	94653266	94653266	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaagtaaggactgatgcaGaaaaactgaaggtaagaaat	10	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	94653266	94653266	G	T	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	nonsense	c.310	p.E104*	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	316	0	0	259	41	13.67	-	-	-	T	94653266	G	T	94653266	4	4	275	1	0	0	0	0	0	1	0	0	5344	943	33	2	358	2	EXOC6	10	94653266	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	286853	94653266	40881481	2935	28622										
EXOC6	0	genome.wustl.edu	37	chr10	94654715	94654715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacacagaagatatcattcGatgtagaattcagcagagaa	8	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	94654715	94654715	G	A	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.398	p.R133Q	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	898	0	0	651	95	12.73	-	-	-	A	94654715	G	A	94654715	3	1	275	1	0	0	0	0	1	0	0	0	5344	1058	37	1	454	1	EXOC6	10	94654715	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1449	94654715	40880032	2936	28623										
EXOC6	0	genome.wustl.edu	37	chr10	94712044	94712044	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacagcagtctttcccaaaGaaattccccatgtctcagtc	5	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	94712044	94712044	G	T	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.1479	p.K493N	1.000	pfam_Sec15,pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	219	0	0	173	20	10.36	-	-	-	T	94712044	G	T	94712044	3	4	275	1	0	0	0	0	1	0	0	0	5344	933	33	2	1579	2	EXOC6	10	94712044	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57329	94712044	40822703	2937	28624										
MYOF	0	genome.wustl.edu	37	chr10	95095718	95095718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggatcttcattttcatccGacttgcctcggtacaacttg	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	95095718	95095718	G	A	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.4523	p.S1508L	0.969	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	375	2	0.53	417	49	10.45	-	-	-	A	95095718	G	A	95095718	3	1	275	1	0	0	0	0	1	0	0	0	10161	1059	37	1	1718	1	MYOF	10	95095718	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	383674	95095718	40439029	2938	28625										
MYOF	0	genome.wustl.edu	37	chr10	95111509	95111509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatagatttcaacttcatcGaatataattgtttggtccca	5	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	95111509	95111509	G	A	SNP	MYOF	ENST00000463743	human	ensembl	69_37n	-1	known	missense	c.1700	p.S567L	0.982	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Ferlin_B-domain,pfam_C2_Ca-dep,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peroxin/Ferlin,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYOF	HGNC	ENSG00000138119	349	0	0	180	70	27.78	-	-	-	A	95111509	G	A	95111509	3	1	275	1	0	0	0	0	1	0	0	0	10161	1049	37	1	2697	1	MYOF	10	95111509	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15791	95111509	40423238	2939	28626										
MYOF	0	genome.wustl.edu	37	chr10	95147570	95147570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacctcaacaaccagcaggTcatcatttgaaatgggctca	7	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	95147570	95147570	T	C	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.1682	p.D561G	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	400	0	0	237	84	26.09	-	-	-	C	95147570	T	C	95147570	3	2	275	1	0	0	0	0	1	0	0	0	10161	1667	58	5	4647	5	MYOF	10	95147570	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	36061	95147570	40387177	2940	28627										
LGI1	0	genome.wustl.edu	37	chr10	95537158	95537158	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattcacatcgaactcctttGatgtgatcagtgatgatgct	8	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	95537158	95537158	G	T	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.310	p.D104Y	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	186	0	0	138	54	28.12	-	-	-	T	95537158	G	T	95537158	3	4	275	1	0	0	0	0	1	0	0	0	8806	1290	45	2	320	2	LGI1	10	95537158	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	389588	95537158	39997589	2941	28628										
PLCE1	0	genome.wustl.edu	37	chr10	96058234	96058234	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagaactcccaaatgttatCatatctcgtcgctgaatgaa	6	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96058234	96058234	C	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.5266	p.H1756N	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	82	0	0	63	22	25.58	-	-	-	A	96058234	C	A	96058234	3	1	275	1	0	0	0	0	1	0	0	0	12108	826	29	2	5642	2	PLCE1	10	96058234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	521076	96058234	39476513	2942	28629										
NOC3L	0	genome.wustl.edu	37	chr10	96093961	96093961	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgatgttttcaaatatttCgtgaaatccagaggcgattc	9	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96093961	96093961	C	T	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	silent	c.2376	p.T792	0.176	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	121	0	0	98	30	23.44	-	-	-	T	96093961	C	T	96093961	2	4	275	1	0	0	0	0	0	0	0	1	10586	871	31	1		1	NOC3L	10	96093961	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35727	96093961	39440786	2943	28630										
NOC3L	0	genome.wustl.edu	37	chr10	96121509	96121509	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttagtttcctctgttcttTtcggtacttcttgagagtgc	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96121509	96121509	T	C	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	missense	c.130	p.K44E	0.999	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	458	0	0	301	96	24.12	-	-	-	C	96121509	T	C	96121509	3	2	275	1	0	0	0	0	1	0	0	0	10586	1850	64	5	2352	5	NOC3L	10	96121509	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	27548	96121509	39413238	2944	28631										
HELLS	0	genome.wustl.edu	37	chr10	96306253	96306253	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagcggaagatgctggaaAaggtaatttaggcatcaggt	15	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96306253	96306253	A	C	SNP	HELLS	ENST00000371332	human	ensembl	69_37n	1	known	missense	c.151	p.K51Q	0.997	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969	202	0	0	97	49	33.56	-	-	-	C	96306253	A	C	96306253	3	2	275	1	0	0	0	0	1	0	0	0	7097	15	1	5	157	5	HELLS	10	96306253	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	184744	96306253	39228494	2945	28632										
CYP2C18	0	genome.wustl.edu	37	chr10	96447538	96447538	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtttagttctcaaaagtCtatggccctgtgttcactgt	8	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96447538	96447538	C	T	SNP	CYP2C18	ENST00000285979	human	ensembl	69_37n	1	known	silent	c.180	p.V60	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242	1309	0	0	692	343	33.01	-	-	-	T	96447538	C	T	96447538	2	4	275	1	0	0	0	0	0	0	0	1	4196	900	32	2		2	CYP2C18	10	96447538	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141285	96447538	39087209	2946	28633										
CYP2C8	0	genome.wustl.edu	37	chr10	96818189	96818189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctccctaatgtaacttCgtgtaagagcaacattttta	5	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	96818189	96818189	C	T	SNP	CYP2C8	ENST00000371270	human	ensembl	69_37n	-1	known	missense	c.722	p.R241Q	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115	572	0	0	486	61	11.13	-	-	-	T	96818189	C	T	96818189	3	4	275	1	0	0	0	0	1	0	0	0	4198	884	31	1	770	1	CYP2C8	10	96818189	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	370651	96818189	38716558	2947	28634										
SORBS1	0	genome.wustl.edu	37	chr10	97096790	97096790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgatcgtggggtgggacGatctgaccaactcaaatggg	14	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	97096790	97096790	G	A	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.3127	p.R1043C	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	193	0	0	152	25	13.97	-	-	-	A	97096790	G	A	97096790	3	1	275	1	0	0	0	0	1	0	0	0	15016	1058	37	1	831	1	SORBS1	10	97096790	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	278601	97096790	38437957	2948	28635										
CC2D2B	0	genome.wustl.edu	37	chr10	97778987	97778987	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcttatgtagtaactcaaGaaactaatgaatatttgctt	7	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	97778987	97778987	G	T	SNP	CC2D2B	ENST00000451649	human	ensembl	69_37n	1	known	nonsense	c.550	p.E184*	1.000	NULL	NULL	-	no_errors	CC2D2B	HGNC	ENSG00000188649	268	0	0	238	35	12.82	-	-	-	T	97778987	G	T	97778987	4	4	275	1	0	0	0	0	0	1	0	0	2754	943	33	2	572	2	CC2D2B	10	97778987	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	682197	97778987	37755760	2949	28636										
CC2D2B	0	genome.wustl.edu	37	chr10	97786972	97786972	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggattcttaccttaggatCgaaaggactctgaagagtaa	10	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	97786972	97786972	C	T	SNP	CC2D2B	ENST00000371198	human	ensembl	69_37n	1	known	nonsense	c.397	p.R133*	0.998	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CC2D2B	HGNC	ENSG00000188649	322	0	0	196	79	28.73	-	-	-	T	97786972	C	T	97786972	4	4	275	1	0	0	0	0	0	1	0	0	2754	874	31	1	877	1	CC2D2B	10	97786972	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7985	97786972	37747775	2950	28637										
ZNF518A	0	genome.wustl.edu	37	chr10	97963976	97963976	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatggccaataaaatgtatCtaaagataaaagagccacca	6	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	97963976	97963976	C	A	SNP	ZNF518A	ENST00000563195	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	84	0	0	54	45	45.45	-	-	-	A	97963976	C	A	97963976	1	1	275	0	1	0	0	0	0	0	0	0	18058	928	32	2		2	ZNF518A	10	97963976	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	177004	97963976	37570771	2951	28638										
BLNK	0	genome.wustl.edu	37	chr10	97983634	97983634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacttgaggtttctgcaaaGcagtcagggccggcagggtg	17	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	97983634	97983634	G	A	SNP	BLNK	ENST00000224337	human	ensembl	69_37n	-1	known	missense	c.473	p.A158V	0.837	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	BLNK	HGNC	ENSG00000095585	297	0	0	203	72	26.09	-	-	-	A	97983634	G	A	97983634	3	1	275	1	0	0	0	0	1	0	0	0	1452	971	34	4	945	4	BLNK	10	97983634	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19658	97983634	37551113	2952	28639										
DNTT	0	genome.wustl.edu	37	chr10	98084132	98084132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaagcctgaaatttacacGaatgcagaaagcaggtaaat	8	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	98084132	98084132	G	A	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.860	p.R287Q	0.001	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	238	0	0	159	31	16.23	-	-	-	A	98084132	G	A	98084132	3	1	275	1	0	0	0	0	1	0	0	0	4715	1058	37	1	882	1	DNTT	10	98084132	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	100498	98084132	37450615	2953	28640										
TLL2	0	genome.wustl.edu	37	chr10	98133400	98133400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctctgcactgaggcatccGaataaaacctgagaaacata	7	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	98133400	98133400	G	A	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.2615	p.S872L	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	101	0	0	64	13	16.88	-	-	-	A	98133400	G	A	98133400	3	1	275	1	0	0	0	0	1	0	0	0	16041	1059	37	1	444	1	TLL2	10	98133400	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49268	98133400	37401347	2954	28641										
SLIT1	0	genome.wustl.edu	37	chr10	98794278	98794278	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaattgcttaaggaactGatcttgttgttgctcaggtc	12	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	98794278	98794278	G	A	SNP	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	silent	c.2388	p.I796	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	334	0	0	233	94	28.66	-	-	-	A	98794278	G	A	98794278	2	1	275	1	0	0	0	0	0	0	0	1	14828	1280	45	2		2	SLIT1	10	98794278	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	660878	98794278	36740469	2955	28642										
ARHGAP19	0	genome.wustl.edu	37	chr10	99023380	99023380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctaaacaaaccctctactCgcaagtctgtttagcataaa	4	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99023380	99023380	C	T	SNP	ARHGAP19	ENST00000453547	human	ensembl	69_37n	-1	known	missense	c.410	p.R137Q	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP19	HGNC	ENSG00000213390	73	0	0	88	25	22.12	-	-	-	T	99023380	C	T	99023380	3	4	275	1	0	0	0	0	1	0	0	0	871	884	31	1	1110	1	ARHGAP19	10	99023380	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	229102	99023380	36511367	2956	28643										
RRP12	0	genome.wustl.edu	37	chr10	99118588	99118588	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcttctttcctggcctcaGttgagttccaggaaggtgcc	10	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99118588	99118588	G	T	SNP	RRP12	ENST00000465394	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRP12	HGNC	ENSG00000052749	30	0	0	26	16	38.1	-	-	-	T	99118588	G	T	99118588	1	4	275	0	1	0	0	0	0	0	0	0	13772	1044	36	4		4	RRP12	10	99118588	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	95208	99118588	36416159	2957	28644										
RRP12	0	genome.wustl.edu	37	chr10	99160153	99160153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggccactcaggaaggtaCccgaggacttctcggtgaga	13	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99160153	99160153	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	missense	c.278	p.G93D	0.069	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	80	0	0	74	27	26.47	-	-	-	T	99160153	C	T	99160153	3	4	275	1	0	0	0	0	1	0	0	0	13772	507	18	4	3747	4	RRP12	10	99160153	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41565	99160153	36374594	2958	28645										
MMS19	0	genome.wustl.edu	37	chr10	99219884	99219884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggaacatgatccgcacttCggcatggccagcacgagtca	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99219884	99219884	C	T	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	missense	c.2575	p.E859K	0.999	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	131	0	0	83	15	15.31	-	-	-	T	99219884	C	T	99219884	3	4	275	1	0	0	0	0	1	0	0	0	9744	893	31	1	541	1	MMS19	10	99219884	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59731	99219884	36314863	2959	28646										
MMS19	0	genome.wustl.edu	37	chr10	99229951	99229951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactttctcaatcaacagggGcagcagaaactgtgggacag	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99229951	99229951	G	A	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	missense	c.781	p.P261S	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	183	0	0	142	25	14.88	-	-	-	A	99229951	G	A	99229951	3	1	275	1	0	0	0	0	1	0	0	0	9744	1203	42	4	2399	4	MMS19	10	99229951	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10067	99229951	36304796	2960	28647										
AVPI1	0	genome.wustl.edu	37	chr10	99437779	99437779	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgcagagtggggctccagGattctgcagagaacaagtgt	15	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99437779	99437779	G	T	SNP	AVPI1	ENST00000370626	human	ensembl	69_37n	-1	known	silent	c.291	p.I97	0.000	NULL	NULL	-	no_errors	AVPI1	HGNC	ENSG00000119986	90	0	0	87	13	13	-	-	-	T	99437779	G	T	99437779	2	4	275	1	0	0	0	0	0	0	0	1	1234	1164	41	2		2	AVPI1	10	99437779	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	207828	99437779	36096968	2961	28648										
GOLGA7B	0	genome.wustl.edu	37	chr10	99623939	99623939	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcaggttctcaagaagatTtcccgctacatccaggagca	9	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	99623939	99623939	T	G	SNP	GOLGA7B	ENST00000370602	human	ensembl	69_37n	1	known	missense	c.306	p.I102M	0.970	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	GOLGA7B	HGNC	ENSG00000155265	115	0	0	63	22	25.58	-	-	-	G	99623939	T	G	99623939	3	3	275	1	0	0	0	0	1	0	0	0	6612	1829	64	5	320	5	GOLGA7B	10	99623939	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	186160	99623939	35910808	2962	28649										
PYROXD2	0	genome.wustl.edu	37	chr10	100152324	100152324	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgcaccttcgccactgtCtagagcccaccagaacaagg	8	16	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	100152324	100152324	C	A	SNP	PYROXD2	ENST00000370575	human	ensembl	69_37n	-1	known	splice_site	c.928-1	e10-1	0.977	-	-	-	no_errors	PYROXD2	HGNC	ENSG00000119943	197	0	0	188	27	12.56	-	-	-	A	100152324	C	A	100152324	5	1	275	1	0	0	0	0	0	0	1	0	12950	927	32	2	846	2	PYROXD2	10	100152324	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	528385	100152324	35382423	2963	28650										
PYROXD2	0	genome.wustl.edu	37	chr10	100174831	100174831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcttccgtgttatctcgtCtccacgccgggaagggagag	14	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	100174831	100174831	C	A	SNP	PYROXD2	ENST00000370575	human	ensembl	69_37n	-1	known	missense	c.62	p.R21I	0.599	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943	73	0	0	30	17	36.17	-	-	-	A	100174831	C	A	100174831	3	1	275	1	0	0	0	0	1	0	0	0	12950	913	32	2	1747	2	PYROXD2	10	100174831	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22507	100174831	35359916	2964	28651										
ABCC2	0	genome.wustl.edu	37	chr10	101553386	101553386	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgtccctattctggattCtctcgatactctgtggcact	7	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101553386	101553386	C	A	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.412	p.L138I	1.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	344	0	0	291	34	10.46	-	-	-	A	101553386	C	A	101553386	3	1	275	1	0	0	0	0	1	0	0	0	53	913	32	2	426	2	ABCC2	10	101553386	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1378555	101553386	33981361	2965	28652										
ABCC2	0	genome.wustl.edu	37	chr10	101606856	101606856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaacttgggttatcccacGaagtgacagaggctggtggc	14	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101606856	101606856	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.4285	p.E1429K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	45	0	0	78	12	13.04	-	-	-	A	101606856	G	A	101606856	3	1	275	1	0	0	0	0	1	0	0	0	53	1059	37	1	4403	1	ABCC2	10	101606856	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	53470	101606856	33927891	2966	28653										
DNMBP	0	genome.wustl.edu	37	chr10	101643877	101643877	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaagtcttgagcagcattGaagttccgttctgcctggaa	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101643877	101643877	G	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.3960	p.F1320L	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	282	0	0	142	62	30.39	-	-	-	T	101643877	G	T	101643877	3	4	275	1	0	0	0	0	1	0	0	0	4709	1281	45	2	857	2	DNMBP	10	101643877	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	37021	101643877	33890870	2967	28654										
CHUK	0	genome.wustl.edu	37	chr10	101960453	101960453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccatcaagtctccctgacGtcttccataggggctcttct	7	14	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101960453	101960453	G	A	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.1654	p.R552C	0.963	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	184	0	0	133	26	16.35	-	-	-	A	101960453	G	A	101960453	3	1	275	1	0	0	0	0	1	0	0	0	3445	1145	40	1	611	1	CHUK	10	101960453	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	316576	101960453	33574294	2968	28655										
CHUK	0	genome.wustl.edu	37	chr10	101961901	101961901	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatgcttttagcattttttCtgaagctaaaagaaaagtct	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101961901	101961901	C	T	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.1513	p.E505K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	291	0	0	256	38	12.93	-	-	-	T	101961901	C	T	101961901	3	4	275	1	0	0	0	0	1	0	0	0	3445	922	32	2	756	2	CHUK	10	101961901	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1448	101961901	33572846	2969	28656										
CHUK	0	genome.wustl.edu	37	chr10	101978515	101978515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtaaatggctactaaaccGaacttctcctgacatctctt	6	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	101978515	101978515	G	A	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.757	p.R253W	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	329	0	0	276	34	10.97	-	-	-	A	101978515	G	A	101978515	3	1	275	1	0	0	0	0	1	0	0	0	3445	1057	37	1	1536	1	CHUK	10	101978515	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16614	101978515	33556232	2970	28657										
PKD2L1	0	genome.wustl.edu	37	chr10	102049841	102049841	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgagcctacagcatcaatCtgggacactactccttccag	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102049841	102049841	C	A	SNP	PKD2L1	ENST00000318222	human	ensembl	69_37n	-1	known	missense	c.2181	p.Q727H	0.948	prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593	83	0	0	60	21	25.93	-	-	-	A	102049841	C	A	102049841	3	1	275	1	0	0	0	0	1	0	0	0	12041	912	32	2	248	2	PKD2L1	10	102049841	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71326	102049841	33484906	2971	28658										
SEC31B	0	genome.wustl.edu	37	chr10	102250466	102250466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagtgactcactcaccagGccttaccccagggctcaaag	8	15	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102250466	102250466	G	A	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.2647	p.P883S	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	219	0	0	177	23	11.44	-	-	-	A	102250466	G	A	102250466	3	1	275	1	0	0	0	0	1	0	0	0	14087	1203	42	4	920	4	SEC31B	10	102250466	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	200625	102250466	33284281	2972	28659										
SEC31B	0	genome.wustl.edu	37	chr10	102267700	102267700	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgactttgatgataggttCattcttcctgagatcccaca	7	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102267700	102267700	C	A	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	nonsense	c.604	p.E202*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	140	0	0	86	21	19.44	-	-	-	A	102267700	C	A	102267700	4	1	275	1	0	0	0	0	0	1	0	0	14087	835	29	2	3019	2	SEC31B	10	102267700	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17234	102267700	33267047	2973	28660										
C10orf2	0	genome.wustl.edu	37	chr10	102750681	102750681	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaagtttgcaacagacaatAactgccatgtgacactggtc	10	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102750681	102750681	A	C	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.1648	p.N550H	0.939	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	108	0	0	63	16	20.25	-	-	-	C	102750681	A	C	102750681	3	2	275	1	0	0	0	0	1	0	0	0	1607	362	13	5	1662	5	C10orf2	10	102750681	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	482981	102750681	32784066	2974	28661										
LZTS2	0	genome.wustl.edu	37	chr10	102762435	102762435	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggccagctcctccccgccAccacggccctcctgggccca	11	22	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102762435	102762435	A	C	SNP	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	missense	c.140	p.H47P	0.981	NULL	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	20	0	0	11	4	26.67	-	-	-	C	102762435	A	C	102762435	3	2	275	1	0	0	0	0	1	0	0	0	9206	159	6	5	142	5	LZTS2	10	102762435	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	11754	102762435	32772312	2975	28662										
LZTS2	0	genome.wustl.edu	37	chr10	102763660	102763660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggggtccctactgggcccTcccactcagacagtggccgg	14	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	102763660	102763660	T	C	SNP	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	missense	c.805	p.S269P	1.000	NULL	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	25	0	0	9	4	30.77	-	-	-	C	102763660	T	C	102763660	3	2	275	1	0	0	0	0	1	0	0	0	9206	1551	54	5	811	5	LZTS2	10	102763660	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1225	102763660	32771087	2976	28663										
POLL	0	genome.wustl.edu	37	chr10	103344476	103344476	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggccagaacttccagcttCtctgtgatatggaggttgtg	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	103344476	103344476	C	T	SNP	POLL	ENST00000436284	human	ensembl	69_37n	-1	known	missense	c.347	p.R116K	1.000	NULL	superfamily_BRCT_dom,pfscan_BRCT_dom	-	no_errors	POLL	HGNC	ENSG00000166169	44	0	0	23	7	23.33	-	-	-	T	103344476	C	T	103344476	3	4	275	1	0	0	0	0	1	0	0	0	12279	912	32	2	973	2	POLL	10	103344476	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	580816	103344476	32190271	2977	28664										
MGEA5	0	genome.wustl.edu	37	chr10	103572878	103572878	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtatttaattcccatttCtggagccttaaggagaaaga	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	103572878	103572878	C	A	SNP	MGEA5	ENST00000361464	human	ensembl	69_37n	-1	known	missense	c.258	p.Q86H	1.000	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	213	0	0	156	37	19.17	-	-	-	A	103572878	C	A	103572878	3	1	275	1	0	0	0	0	1	0	0	0	9626	912	32	2	2548	2	MGEA5	10	103572878	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	228402	103572878	31961869	2978	28665										
ELOVL3	0	genome.wustl.edu	37	chr10	103986365	103986365	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttccagccctataacttCgagctgtccaaggacatgag	9	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	103986365	103986365	C	T	SNP	ELOVL3	ENST00000370005	human	ensembl	69_37n	1	known	silent	c.60	p.F20	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL3	HGNC	ENSG00000119915	154	0	0	134	19	12.42	-	-	-	T	103986365	C	T	103986365	2	4	275	1	0	0	0	0	0	0	0	1	5112	883	31	1		1	ELOVL3	10	103986365	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	413487	103986365	31548382	2979	28666										
NFKB2	0	genome.wustl.edu	37	chr10	104156690	104156690	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgagggaccagccaagatCgaggtggacctggtaacaca	13	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	104156690	104156690	C	T	SNP	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	silent	c.273	p.I91	0.444	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	104	0	0	72	8	10	-	-	-	T	104156690	C	T	104156690	2	4	275	1	0	0	0	0	0	0	0	1	10448	874	31	1		1	NFKB2	10	104156690	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	170325	104156690	31378057	2980	28667										
NFKB2	0	genome.wustl.edu	37	chr10	104158208	104158208	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcggcctgtaacagtgtttCtgcaactgaaacgcaagcga	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	104158208	104158208	C	A	SNP	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	missense	c.919	p.L307M	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	184	0	0	56	22	28.21	-	-	-	A	104158208	C	A	104158208	3	1	275	1	0	0	0	0	1	0	0	0	10448	912	32	2	957	2	NFKB2	10	104158208	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1518	104158208	31376539	2981	28668										
NT5C2	0	genome.wustl.edu	37	chr10	104866380	104866380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaatcataagcaaagctgaGcaactcctggggatagccaa	10	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	104866380	104866380	G	A	SNP	NT5C2	ENST00000343289	human	ensembl	69_37n	-1	known	missense	c.259	p.L87F	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685	246	0	0	166	28	14.36	-	-	-	A	104866380	G	A	104866380	3	1	275	1	0	0	0	0	1	0	0	0	10760	971	34	4	1486	4	NT5C2	10	104866380	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	708172	104866380	30668367	2982	28669										
CALHM2	0	genome.wustl.edu	37	chr10	105207163	105207163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgttggcagcgagcacccGagagtgcacctcggccgtgc	14	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	105207163	105207163	G	A	SNP	CALHM2	ENST00000260743	human	ensembl	69_37n	-1	known	missense	c.718	p.R240W	0.650	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172	75	0	0	28	8	22.22	-	-	-	A	105207163	G	A	105207163	3	1	275	1	0	0	0	0	1	0	0	0	2608	1057	37	1	257	1	CALHM2	10	105207163	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	340783	105207163	30327584	2983	28670										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105372948	105372948	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccctctttgcccaggtatCtgtggggaggagcaggatgt	15	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	105372948	105372948	C	T	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	splice_site	c.921-1	e12-1	1.000	-	-	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	35	0	0	21	6	22.22	-	-	-	T	105372948	C	T	105372948	5	4	275	1	0	0	0	0	0	0	1	0	14345	927	32	2	2497	2	SH3PXD2A	10	105372948	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165785	105372948	30161799	2984	28671										
SLK	0	genome.wustl.edu	37	chr10	105762038	105762038	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtctgtctcagaaaaaacaGaacgtagtaactctgaagat	8	7	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	105762038	105762038	G	T	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	nonsense	c.1102	p.E368*	1.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	46	0	0	38	6	13.64	-	-	-	T	105762038	G	T	105762038	4	4	275	1	0	0	0	0	0	1	0	0	14837	943	33	2	1136	2	SLK	10	105762038	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	389090	105762038	29772709	2985	28672										
SLK	0	genome.wustl.edu	37	chr10	105762671	105762671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgggaaagaagtggtcGaagtaggccagaaattaatt	13	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	105762671	105762671	G	A	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	missense	c.1735	p.E579K	0.434	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	63	0	0	73	32	30.48	-	-	-	A	105762671	G	A	105762671	3	1	275	1	0	0	0	0	1	0	0	0	14837	1059	37	1	1769	1	SLK	10	105762671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	633	105762671	29772076	2986	28673										
CCDC147	0	genome.wustl.edu	37	chr10	106160477	106160477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctggggtctcagcttgttCggcgcaatgatgagttagct	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	106160477	106160477	C	T	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.1855	p.R619W	0.964	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	252	0	0	178	78	30.35	-	-	-	T	106160477	C	T	106160477	3	4	275	1	0	0	0	0	1	0	0	0	2806	875	31	1	1905	1	CCDC147	10	106160477	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397806	106160477	29374270	2987	28674										
SORCS3	0	genome.wustl.edu	37	chr10	106899195	106899195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctactacgtgtcttatcGaagagaggcctttgctcaga	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	106899195	106899195	G	A	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.1253	p.R418Q	0.996	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	594	1	0.17	338	55	13.99	-	-	-	A	106899195	G	A	106899195	3	1	275	1	0	0	0	0	1	0	0	0	15021	1058	37	1	1283	1	SORCS3	10	106899195	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	738718	106899195	28635552	2988	28675										
SORCS1	0	genome.wustl.edu	37	chr10	108366943	108366943	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgctccaggtcatcagttGaccttttgttttctccagct	7	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	108366943	108366943	G	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	nonsense	c.3146	p.S1049*	0.916	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	201	0	0	123	48	28.07	-	-	-	T	108366943	G	T	108366943	4	4	275	1	0	0	0	0	0	1	0	0	15019	1294	45	2	610	2	SORCS1	10	108366943	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1467748	108366943	27167804	2989	28676										
SORCS1	0	genome.wustl.edu	37	chr10	108437075	108437075	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcatgtgcccttaccaaaGatgtcgaattgggagagatg	12	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	108437075	108437075	G	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	missense	c.1828	p.L610I	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	255	0	0	145	66	31.28	-	-	-	T	108437075	G	T	108437075	3	4	275	1	0	0	0	0	1	0	0	0	15019	942	33	2	1968	2	SORCS1	10	108437075	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70132	108437075	27097672	2990	28677										
SHOC2	0	genome.wustl.edu	37	chr10	112724655	112724655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgatttacggcataataAactgagagaaattccttcag	8	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	112724655	112724655	A	C	SNP	SHOC2	ENST00000369452	human	ensembl	69_37n	1	known	missense	c.539	p.K180T	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061	126	0	0	70	27	27.84	-	-	-	C	112724655	A	C	112724655	3	2	275	1	0	0	0	0	1	0	0	0	14376	14	1	5	541	5	SHOC2	10	112724655	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	4287580	112724655	22810092	2991	28678										
SHOC2	0	genome.wustl.edu	37	chr10	112771504	112771504	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagtcaccttccacctcaGattgttgctggggggccttc	10	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	112771504	112771504	G	T	SNP	SHOC2	ENST00000369452	human	ensembl	69_37n	1	known	missense	c.1677	p.Q559H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061	209	0	0	114	18	13.64	-	-	-	T	112771504	G	T	112771504	3	4	275	1	0	0	0	0	1	0	0	0	14376	933	33	2	1707	2	SHOC2	10	112771504	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46849	112771504	22763243	2992	28679										
GPAM	0	genome.wustl.edu	37	chr10	113913346	113913346	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaatatattctagaagttTttgtcggttgcattgaggta	10	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	113913346	113913346	T	G	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.2449	p.K817Q	0.999	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	371	1	0.27	203	121	37.35	-	-	-	G	113913346	T	G	113913346	3	3	275	1	0	0	0	0	1	0	0	0	6638	1850	64	5	41	5	GPAM	10	113913346	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1141842	113913346	21621401	2993	28680										
GPAM	0	genome.wustl.edu	37	chr10	113917023	113917023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaccttcaggtagcaatctCgctgttcctccccaaagtca	7	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	113917023	113917023	C	T	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.2105	p.R702Q	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	388	1	0.26	354	48	11.94	-	-	-	T	113917023	C	T	113917023	3	4	275	1	0	0	0	0	1	0	0	0	6638	884	31	1	397	1	GPAM	10	113917023	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3677	113917023	21617724	2994	28681										
NRAP	0	genome.wustl.edu	37	chr10	115356935	115356935	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atactgtctggttttttacgGtacttggtctataagataaa	8	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115356935	115356935	G	T	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	nonsense	c.4365	p.Y1455*	0.998	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	265	0	0	207	31	13.03	-	-	-	T	115356935	G	T	115356935	4	4	275	1	0	0	0	0	0	1	0	0	10711	1256	44	4	875	4	NRAP	10	115356935	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1439912	115356935	20177812	2995	28682										
NRAP	0	genome.wustl.edu	37	chr10	115380437	115380437	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcgacccagcccatgccttTcatccacttcacatctgccc	6	19	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115380437	115380437	T	G	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	missense	c.2824	p.K942Q	1.000	pfscan_Nebulin_35r-motif,prints_Nebulin	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	479	1	0.21	356	42	10.53	-	-	-	G	115380437	T	G	115380437	3	3	275	1	0	0	0	0	1	0	0	0	10711	1792	62	5	2464	5	NRAP	10	115380437	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	23502	115380437	20154310	2996	28683										
C10orf118	0	genome.wustl.edu	37	chr10	115891064	115891064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtttggacttcctcttttCgcagttcttcctctttcaac	6	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115891064	115891064	C	T	SNP	C10orf118	ENST00000369287	human	ensembl	69_37n	-1	known	missense	c.1943	p.R648Q	0.372	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813	377	0	0	207	97	31.8	-	-	-	T	115891064	C	T	115891064	3	4	275	1	0	0	0	0	1	0	0	0	1597	884	31	1	773	1	C10orf118	10	115891064	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	510627	115891064	19643683	2997	28684										
C10orf118	0	genome.wustl.edu	37	chr10	115905410	115905410	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgcatctctaagttttttCtcaagtgtctctttttcctt	4	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115905410	115905410	C	A	SNP	C10orf118	ENST00000369287	human	ensembl	69_37n	-1	known	missense	c.999	p.E333D	1.000	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813	758	0	0	521	73	12.29	-	-	-	A	115905410	C	A	115905410	3	1	275	1	0	0	0	0	1	0	0	0	1597	912	32	2	1745	2	C10orf118	10	115905410	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14346	115905410	19629337	2998	28685										
TDRD1	0	genome.wustl.edu	37	chr10	115970485	115970485	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaacaccagaagacttcttTtgtcaacaactgcaaagtgg	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115970485	115970485	T	G	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	missense	c.1530	p.F510L	1.000	pfam_Tudor	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	292	0	0	183	26	12.44	-	-	-	G	115970485	T	G	115970485	3	3	275	1	0	0	0	0	1	0	0	0	15825	1838	64	5	1572	5	TDRD1	10	115970485	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	65075	115970485	19564262	2999	28686										
TDRD1	0	genome.wustl.edu	37	chr10	115978191	115978191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgatggtagttggtatcGtgctttagtcaaggaaatct	13	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	115978191	115978191	G	A	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	missense	c.2342	p.R781H	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	233	0	0	175	22	11.11	-	-	-	A	115978191	G	A	115978191	3	1	275	1	0	0	0	0	1	0	0	0	15825	1145	40	1	2408	1	TDRD1	10	115978191	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7706	115978191	19556556	3000	28687										
AFAP1L2	0	genome.wustl.edu	37	chr10	116100470	116100470	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgaggaagtcatccaactCtgtcagcagctgttccaggg	11	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	116100470	116100470	C	A	SNP	AFAP1L2	ENST00000545353	human	ensembl	69_37n	-1	known	nonsense	c.37	p.E13*	0.990	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	161	0	0	99	40	28.78	-	-	-	A	116100470	C	A	116100470	4	1	275	1	0	0	0	0	0	1	0	0	355	922	32	2	2491	2	AFAP1L2	10	116100470	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122279	116100470	19434277	3001	28688										
ATRNL1	0	genome.wustl.edu	37	chr10	117226686	117226686	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattttcttttctggtagtcGaacaaaaatctggatatatc	6	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	117226686	117226686	G	A	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	silent	c.3420	p.S1140	0.982	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	229	0	0	129	15	10.42	-	-	-	A	117226686	G	A	117226686	2	1	275	1	0	0	0	0	0	0	0	1	1211	1045	37	1		1	ATRNL1	10	117226686	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1126216	117226686	18308061	3002	28689										
ATRNL1	0	genome.wustl.edu	37	chr10	117228793	117228793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagaagcaatcctaacattaCattctatgtgtacgtcagca	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	117228793	117228793	C	T	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	missense	c.3608	p.T1203I	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	115	0	0	74	15	16.85	-	-	-	T	117228793	C	T	117228793	3	4	275	1	0	0	0	0	1	0	0	0	1211	478	17	4	3702	4	ATRNL1	10	117228793	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2107	117228793	18305954	3003	28690										
PNLIPRP1	0	genome.wustl.edu	37	chr10	118357354	118357354	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttagggttggatcctgtaGaagcaagtttcgagagtact	12	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	118357354	118357354	G	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	69_37n	1	known	nonsense	c.589	p.E197*	0.973	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021	145	0	0	152	20	11.63	-	-	-	T	118357354	G	T	118357354	4	4	275	1	0	0	0	0	0	1	0	0	12224	943	33	2	611	2	PNLIPRP1	10	118357354	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1128561	118357354	17177393	3004	28691										
C10orf82	0	genome.wustl.edu	37	chr10	118425226	118425226	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtggccactgcgcagcacAattcccgcagctgttcttta	9	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	118425226	118425226	A	C	SNP	C10orf82	ENST00000588184	human	ensembl	69_37n	-1	known	missense	c.167	p.L56W	0.005	NULL	NULL	-	no_errors	C10orf82	HGNC	ENSG00000165863	116	0	0	62	20	24.39	-	-	-	C	118425226	A	C	118425226	3	2	275	1	0	0	0	0	1	0	0	0	1630	131	5	5	309	5	C10orf82	10	118425226	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	67872	118425226	17109521	3005	28692										
KCNK18	0	genome.wustl.edu	37	chr10	118957182	118957182	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggagagtttgagaagttCttggaggagctctgcagaat	15	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	118957182	118957182	C	A	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.183	p.F61L	0.203	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	79	0	0	35	21	37.5	-	-	-	A	118957182	C	A	118957182	3	1	275	1	0	0	0	0	1	0	0	0	8119	912	32	2	185	2	KCNK18	10	118957182	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	531956	118957182	16577565	3006	28693										
SLC18A2	0	genome.wustl.edu	37	chr10	119027222	119027222	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttatggactcatagctccGaactttggagttggttttgc	10	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	119027222	119027222	G	A	SNP	SLC18A2	ENST00000298472	human	ensembl	69_37n	1	known	silent	c.1161	p.P387	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	310	0	0	256	96	27.27	-	-	-	A	119027222	G	A	119027222	2	1	275	1	0	0	0	0	0	0	0	1	14515	1045	37	1		1	SLC18A2	10	119027222	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70040	119027222	16507525	3007	28694										
PDZD8	0	genome.wustl.edu	37	chr10	119043081	119043081	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttctctaacaagggaatTattgtgttccaactcctgat	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	119043081	119043081	T	G	SNP	PDZD8	ENST00000334464	human	ensembl	69_37n	-1	known	missense	c.3163	p.N1055H	1.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650	216	0	0	94	39	29.32	-	-	-	G	119043081	T	G	119043081	3	3	275	1	0	0	0	0	1	0	0	0	11778	1754	61	5	305	5	PDZD8	10	119043081	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	15859	119043081	16491666	3008	28695										
RAB11FIP2	0	genome.wustl.edu	37	chr10	119799784	119799784	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtcgctgaggacccaagaGaaaaggcttttttggtttgg	14	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	119799784	119799784	G	T	SNP	RAB11FIP2	ENST00000369199	human	ensembl	69_37n	-1	known	missense	c.646	p.L216I	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560	300	0	0	181	23	11.27	-	-	-	T	119799784	G	T	119799784	3	4	275	1	0	0	0	0	1	0	0	0	12977	942	33	2	908	2	RAB11FIP2	10	119799784	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	756703	119799784	15734963	3009	28696										
PRDX3	0	genome.wustl.edu	37	chr10	120928802	120928802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttcggcccactgggagatCgttgacgctcaaatgcttga	12	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	120928802	120928802	C	T	SNP	PRDX3	ENST00000298510	human	ensembl	69_37n	-1	known	missense	c.604	p.D202N	1.000	pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX3	HGNC	ENSG00000165672	130	0	0	132	15	10.14	-	-	-	T	120928802	C	T	120928802	3	4	275	1	0	0	0	0	1	0	0	0	12547	884	31	1	174	1	PRDX3	10	120928802	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1129018	120928802	14605945	3010	28697										
GRK5	0	genome.wustl.edu	37	chr10	121191016	121191016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaatgagaagcagatcctcGagaaggtcaacagtcagttt	10	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	121191016	121191016	G	A	SNP	GRK5	ENST00000392870	human	ensembl	69_37n	1	known	missense	c.715	p.E239K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK5	HGNC	ENSG00000198873	111	0	0	77	16	17.02	-	-	-	A	121191016	G	A	121191016	3	1	275	1	0	0	0	0	1	0	0	0	6843	1059	37	1	745	1	GRK5	10	121191016	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	262214	121191016	14343731	3011	28698										
RGS10	0	genome.wustl.edu	37	chr10	121259769	121259769	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtacttcatgagattaaaGatctaaggaggaaaagaaaa	9	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	121259769	121259769	G	T	SNP	RGS10	ENST00000369103	human	ensembl	69_37n	-1	known	silent	c.402	p.I134	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS10	HGNC	ENSG00000148908	138	0	0	93	13	12.26	-	-	-	T	121259769	G	T	121259769	2	4	275	1	0	0	0	0	0	0	0	1	13377	932	33	2		2	RGS10	10	121259769	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68753	121259769	14274978	3012	28699										
INPP5F	0	genome.wustl.edu	37	chr10	121571432	121571432	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctgatgatgagaagttCcatgggggctgggccctcat	14	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	121571432	121571432	C	A	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	missense	c.1851	p.F617L	1.000	pfam_Inositol_phosphatase	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	237	0	0	123	39	24.07	-	-	-	A	121571432	C	A	121571432	3	1	275	1	0	0	0	0	1	0	0	0	7812	854	30	2	1909	2	INPP5F	10	121571432	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	311663	121571432	13963315	3013	28700										
INPP5F	0	genome.wustl.edu	37	chr10	121586162	121586162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaagagcagtaaacctcacGaagacatcattggtatcagg	11	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	121586162	121586162	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	missense	c.2269	p.E757K	1.000	NULL	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	102	0	0	75	12	13.79	-	-	-	A	121586162	G	A	121586162	3	1	275	1	0	0	0	0	1	0	0	0	7812	1059	37	1	2347	1	INPP5F	10	121586162	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14730	121586162	13948585	3014	28701										
PPAPDC1A	0	genome.wustl.edu	37	chr10	122280493	122280493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttttgtagacctcgccccGatttcttttaccgctgcttt	6	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	122280493	122280493	G	A	SNP	PPAPDC1A	ENST00000398250	human	ensembl	69_37n	1	known	missense	c.331	p.D111N	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC1A	HGNC	ENSG00000203805	81	0	0	40	15	26.79	-	-	-	A	122280493	G	A	122280493	3	1	275	1	0	0	0	0	1	0	0	0	12366	1058	37	1	349	1	PPAPDC1A	10	122280493	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	694331	122280493	13254254	3015	28702										
FGFR2	0	genome.wustl.edu	37	chr10	123247590	123247590	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatcacattgttttctgttAccaaaacatttctggctgct	5	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	123247590	123247590	A	G	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1904	p.V635A	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	250	0	0	179	52	22.51	-	-	-	G	123247590	A	G	123247590	3	3	275	1	0	0	0	0	1	0	0	0	5912	391	14	5	688	5	FGFR2	10	123247590	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	967097	123247590	12287157	3016	28703										
BTBD16	0	genome.wustl.edu	37	chr10	124094412	124094412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaggagaatacaacttattCgaaaacgattgctctatatg	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	124094412	124094412	C	T	SNP	BTBD16	ENST00000368994	human	ensembl	69_37n	1	known	missense	c.1184	p.S395L	0.092	NULL	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152	131	0	0	96	25	20.66	-	-	-	T	124094412	C	T	124094412	3	4	275	1	0	0	0	0	1	0	0	0	1549	893	31	1	1231	1	BTBD16	10	124094412	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	846822	124094412	11440335	3017	28704										
HTRA1	0	genome.wustl.edu	37	chr10	124268261	124268261	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagattaaaaagttcctcacGgagtcccatgaccgacaggc	9	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	124268261	124268261	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	69_37n	1	known	silent	c.1095	p.T365	0.027	superfamily_Pept_cys/ser_Trypsin-like,pfscan_PDZ	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	86	0	0	49	17	25.76	-	-	-	A	124268261	G	A	124268261	2	1	275	1	0	0	0	0	0	0	0	1	7507	1103	39	1		1	HTRA1	10	124268261	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	173849	124268261	11266486	3018	28705										
IKZF5	0	genome.wustl.edu	37	chr10	124753576	124753576	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcactgcttggacctgccActggactatagttcctttga	9	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	124753576	124753576	A	G	SNP	IKZF5	ENST00000368886	human	ensembl	69_37n	-1	known	missense	c.980	p.V327A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574	169	0	0	105	34	24.46	-	-	-	G	124753576	A	G	124753576	3	3	275	1	0	0	0	0	1	0	0	0	7672	159	6	5	283	5	IKZF5	10	124753576	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	485315	124753576	10781171	3019	28706										
ZRANB1	0	genome.wustl.edu	37	chr10	126631661	126631661	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataataaatgagcaagacaGagctcgatggaggggaagtt	13	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	126631661	126631661	G	T	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.599	p.R200I	1.000	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	182	0	0	120	35	22.58	-	-	-	T	126631661	G	T	126631661	3	4	275	1	0	0	0	0	1	0	0	0	18315	942	33	2	601	2	ZRANB1	10	126631661	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1878085	126631661	8903086	3020	28707										
ZRANB1	0	genome.wustl.edu	37	chr10	126673446	126673446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagaagagttctcggcggcGaaatcaccccctggtcactc	11	14	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	126673446	126673446	G	A	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.2012	p.R671Q	1.000	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	213	0	0	151	25	14.2	-	-	-	A	126673446	G	A	126673446	3	1	275	1	0	0	0	0	1	0	0	0	18315	1058	37	1	2046	1	ZRANB1	10	126673446	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41785	126673446	8861301	3021	28708										
C10orf90	0	genome.wustl.edu	37	chr10	128192743	128192743	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggggtttccttcaagtgActttcttgtaaacctgggtt	11	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	128192743	128192743	A	C	SNP	C10orf90	ENST00000544758	human	ensembl	69_37n	-1	known	missense	c.1317	p.S439R	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493	227	1	0.44	119	17	12.5	-	-	-	C	128192743	A	C	128192743	3	2	275	1	0	0	0	0	1	0	0	0	1633	272	10	5	1101	5	C10orf90	10	128192743	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1519297	128192743	7342004	3022	28709										
DOCK1	0	genome.wustl.edu	37	chr10	128859962	128859962	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaagggagaggctgacttCgtggaatctttgctgcagct	13	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	128859962	128859962	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	silent	c.2304	p.F768	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	253	0	0	155	25	13.89	-	-	-	T	128859962	C	T	128859962	2	4	275	1	0	0	0	0	0	0	0	1	4719	883	31	1		1	DOCK1	10	128859962	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	667219	128859962	6674785	3023	28710										
DOCK1	0	genome.wustl.edu	37	chr10	128908585	128908585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaactctactgcttgatcGaaatcgtccacagtgacctc	7	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	128908585	128908585	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.2527	p.E843K	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	171	0	0	119	33	21.71	-	-	-	A	128908585	G	A	128908585	3	1	275	1	0	0	0	0	1	0	0	0	4719	1059	37	1	2625	1	DOCK1	10	128908585	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48623	128908585	6626162	3024	28711										
PTPRE	0	genome.wustl.edu	37	chr10	129881271	129881271	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attaatatcttccctaatttCtttgtatatattttgttatg	3	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	129881271	129881271	C	A	SNP	PTPRE	ENST00000479896	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.461	-	-	-	no_errors	PTPRE	HGNC	ENSG00000132334	10	0	0	10	4	28.57	-	-	-	A	129881271	C	A	129881271	1	1	275	0	1	0	0	0	0	0	0	0	12883	928	32	2		2	PTPRE	10	129881271	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	972686	129881271	5653476	3025	28712										
MKI67	0	genome.wustl.edu	37	chr10	129901624	129901624	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcttctagttctggtgatGatttgcagggtattttagtg	12	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	129901624	129901624	G	T	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	nonsense	c.8480	p.S2827*	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	198	0	0	201	23	10.27	-	-	-	T	129901624	G	T	129901624	4	4	275	1	0	0	0	0	0	1	0	0	9669	1294	45	2	1302	2	MKI67	10	129901624	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20353	129901624	5633123	3026	28713										
MKI67	0	genome.wustl.edu	37	chr10	129905295	129905295	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttatcgttagtcattgaTtcctcagtgtgacctcgtgt	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	129905295	129905295	T	G	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.4809	p.E1603D	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	658	2	0.3	548	200	26.7	-	-	-	G	129905295	T	G	129905295	3	3	275	1	0	0	0	0	1	0	0	0	9669	1490	52	5	4973	5	MKI67	10	129905295	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3671	129905295	5629452	3027	28714										
MKI67	0	genome.wustl.edu	37	chr10	129911740	129911740	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgcattaccagagactttCttttggttggggcttctccc	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	129911740	129911740	C	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.1607	p.R536I	0.060	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	204	0	0	118	27	18.62	-	-	-	A	129911740	C	A	129911740	3	1	275	1	0	0	0	0	1	0	0	0	9669	913	32	2	8195	2	MKI67	10	129911740	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6445	129911740	5623007	3028	28715										
TCERG1L	0	genome.wustl.edu	37	chr10	133107447	133107448	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccttttgtctatccaacINSttttcccaataggggttgca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	133107447	133107448	-	T	INS	TCERG1L	ENST00000368642	human	ensembl	69_37n	-1	known	frame_shift_ins	c.458_457	p.S153fs	0.980:0.982	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1L	HGNC	ENSG00000176769	151	0	0	81	20	19.8	-	-	-	T	133107448	-	T	133107447	7	5	275	1	0	1	1	0	0	0	0	0	15781	565	20	0	1346	0	TCERG1L	10	133107447	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	3195707	133107447	2427300	3029	28716										
KNDC1	0	genome.wustl.edu	37	chr10	135020395	135020395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatgctgtccaagctgaaaGggcagctagaagaaatgaaa	11	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	135020395	135020395	G	T	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	missense	c.3523	p.G1175W	0.993	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	69	0	0	41	5	10.87	-	-	-	T	135020395	G	T	135020395	3	4	275	1	0	0	0	0	1	0	0	0	8479	1000	35	4	3591	4	KNDC1	10	135020395	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1912948	135020395	514352	3030	28717										
TUBGCP2	0	genome.wustl.edu	37	chr10	135097477	135097477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggacgaagttgagcattCgctgccgcagagtgaaagcc	13	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	10	135097477	135097477	C	T	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	missense	c.2138	p.R713Q	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	51	0	0	28	7	20	-	-	-	T	135097477	C	T	135097477	3	4	275	1	0	0	0	0	1	0	0	0	16863	884	31	1	674	1	TUBGCP2	10	135097477	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	77082	135097477	437270	3031	28718										
PHRF1	0	genome.wustl.edu	37	chr11	601669	601669	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatctaagaaacgccaacatCgagtgaagaagagaagaggg	13	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	601669	601669	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	nonsense	c.1120	p.R374*	0.013	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	71	0	0	36	13	26.53	-	-	-	T	601669	C	T	601669	4	4	275	1	0	0	0	0	0	1	0	0	11935	876	31	1	1154	1	PHRF1	11	601669	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		601669	134404847	3032	28719										
TALDO1	0	genome.wustl.edu	37	chr11	760196	760196	+	Frame_Shift_Del	DEL	G	G	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacaaggaagctgggatcaGcaaggaccgaattcttataa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	760196	760196	G	-	DEL	TALDO1	ENST00000319006	human	ensembl	69_37n	1	known	frame_shift_del	c.404	p.S135fs	1.000	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156	115	0	0	102	19	15.57	-	-	-	-	760196	G	-	760196	7	5	275	1	0	1	0	1	0	0	0	0	15635	971	34	0	418	0	TALDO1	11	760196	Frame_Shift_Del	DEL	G	TCGA-AN-A046-01A-21W-A050-09	158527	760196	134246320	3033	28720	243	2								
TALDO1	0	genome.wustl.edu	37	chr11	760197	760197	+	Missense_Mutation	SNP	C	C	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaaggaagctgggatcagCaaggaccgaattcttataaa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	760197	760197	C	A	SNP	TALDO1	ENST00000319006	human	ensembl	69_37n	1	known	missense	c.405	p.S135R	1.000	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156	116	0	0	102	19	15.7	-	-	-	A	760197	C	A	760197	3	1	275	1	0	0	0	0	1	0	0	0	15635	709	25	4	419	4	TALDO1	11	760197	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1	760197	134246319	3034	28721	243	2								
MUC5B	0	genome.wustl.edu	37	chr11	1267333	1267333	+	Frame_Shift_Del	DEL	G	G	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcccctccttcacccttGggaccaccgggaccctccca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	1267333	1267333	G	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	frame_shift_del	c.9232	p.T3079fs	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	82	0	0	63	15	19.23	-	-	-	-	1267333	G	-	1267333	7	5	275	1	0	1	0	1	0	0	0	0	10051	1348	47	0	9354	0	MUC5B	11	1267333	Frame_Shift_Del	DEL	G	TCGA-AN-A046-01A-21W-A050-09	507136	1267333	133739183	3035	28722										
NAP1L4	0	genome.wustl.edu	37	chr11	2979662	2979662	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaagttgaaaaaggactCattgggtacttgtttcgtaa	11	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	2979662	2979662	C	A	SNP	NAP1L4	ENST00000380542	human	ensembl	69_37n	-1	known	nonsense	c.859	p.E287*	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L4	HGNC	ENSG00000205531	472	2	0.42	315	138	30.46	-	-	-	A	2979662	C	A	2979662	4	1	275	1	0	0	0	0	0	1	0	0	10231	835	29	2	292	2	NAP1L4	11	2979662	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1712329	2979662	132026854	3036	28723										
NUP98	0	genome.wustl.edu	37	chr11	3784230	3784230	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttgtagctgtcccaaaaaGacctccaggctgtgaggctt	11	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	3784230	3784230	G	T	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.988	p.L330I	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	330	0	0	221	37	14.34	-	-	-	T	3784230	G	T	3784230	3	4	275	1	0	0	0	0	1	0	0	0	10846	942	33	2	4586	2	NUP98	11	3784230	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	804568	3784230	131222286	3037	28724										
STIM1	0	genome.wustl.edu	37	chr11	4104554	4104554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaccgctggcaacagatcGagatcctctgtggcttccag	11	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4104554	4104554	G	A	SNP	STIM1	ENST00000300737	human	ensembl	69_37n	1	known	missense	c.1300	p.E434K	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323	148	0	0	139	26	15.76	-	-	-	A	4104554	G	A	4104554	3	1	275	1	0	0	0	0	1	0	0	0	15374	1059	37	1	1338	1	STIM1	11	4104554	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	320324	4104554	130901962	3038	28725										
RRM1	0	genome.wustl.edu	37	chr11	4153626	4153626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccagcaacatctatactcGcagagtcttgtcaggagaat	8	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4153626	4153626	G	A	SNP	RRM1	ENST00000300738	human	ensembl	69_37n	1	known	missense	c.1880	p.R627H	1.000	pfam_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	pfam_Ribncl_red_lg_C,pfam_Ribncl_Rdtase_lsu_N,pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone,prints_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	229	0	0	90	28	23.73	-	-	-	A	4153626	G	A	4153626	3	1	275	1	0	0	0	0	1	0	0	0	13767	1087	38	1	1942	1	RRM1	11	4153626	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49072	4153626	130852890	3039	28726										
OR52M1	0	genome.wustl.edu	37	chr11	4567217	4567217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttcttccctgattcaccGatttggtcagtgtgtgcctc	9	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4567217	4567217	G	A	SNP	OR52M1	ENST00000360213	human	ensembl	69_37n	1	known	missense	c.797	p.R266Q	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52M1	HGNC	ENSG00000197790	943	1	0.11	631	93	12.79	-	-	-	A	4567217	G	A	4567217	3	1	275	1	0	0	0	0	1	0	0	0	11199	1058	37	1	799	1	OR52M1	11	4567217	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	413591	4567217	130439299	3040	28727										
OR52I1	0	genome.wustl.edu	37	chr11	4615427	4615427	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctcatcgtgactgcaatCtggatggattccactcggca	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4615427	4615427	C	A	SNP	OR52I1	ENST00000530443	human	ensembl	69_37n	1	putative	silent	c.159	p.I53	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_stop_codon	OR52I1	HGNC	ENSG00000232268	397	0	0	294	72	19.67	-	-	-	A	4615427	C	A	4615427	2	1	275	1	0	0	0	0	0	0	0	1	11193	903	32	2		2	OR52I1	11	4615427	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48210	4615427	130391089	3041	28728										
OR51F1	0	genome.wustl.edu	37	chr11	4790832	4790833	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaaagtgaatccatgaagINSaaaaaacatctggacaatgc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4790832	4790833	-	A	INS	OR51F1	ENST00000380383	human	ensembl	69_37n	-1	known	frame_shift_ins	c.337_336	p.L112fs	0.994:0.992	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51F1	HGNC	ENSG00000188069	170	0	0	134	20	12.99	-	-	-	A	4790833	-	A	4790832	7	5	275	1	0	1	1	0	0	0	0	0	11169	942	33	0	625	0	OR51F1	11	4790832	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	175405	4790832	130215684	3042	28729										
OR51F2	0	genome.wustl.edu	37	chr11	4842941	4842941	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcccgagaaatcaacctaaAtgcctgcattgcccagatgt	8	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4842941	4842941	A	G	SNP	OR51F2	ENST00000322110	human	ensembl	69_37n	1	known	missense	c.326	p.N109S	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925	347	0	0	286	45	13.6	-	-	-	G	4842941	A	G	4842941	3	3	275	1	0	0	0	0	1	0	0	0	11170	101	4	5	328	5	OR51F2	11	4842941	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	52109	4842941	130163575	3043	28730										
OR51F2	0	genome.wustl.edu	37	chr11	4842984	4842984	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctacacggatttactttCatggagtctggggttctact	9	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	4842984	4842984	C	A	SNP	OR51F2	ENST00000322110	human	ensembl	69_37n	1	known	missense	c.369	p.F123L	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925	325	1	0.31	230	79	25.57	-	-	-	A	4842984	C	A	4842984	3	1	275	1	0	0	0	0	1	0	0	0	11170	825	29	2	371	2	OR51F2	11	4842984	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43	4842984	130163532	3044	28731										
MMP26	0	genome.wustl.edu	37	chr11	5011056	5011056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggtccgacacctccatctCgccaggaagatgcaagtgga	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5011056	5011056	C	T	SNP	MMP26	ENST00000300762	human	ensembl	69_37n	1	known	missense	c.278	p.S93L	0.000	NULL	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	-	no_errors	MMP26	HGNC	ENSG00000167346	114	0	0	78	20	20.41	-	-	-	T	5011056	C	T	5011056	3	4	275	1	0	0	0	0	1	0	0	0	9735	893	31	1	284	1	MMP26	11	5011056	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	168072	5011056	129995460	3045	28732										
MMP26	0	genome.wustl.edu	37	chr11	5011924	5011924	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtgacccctttgatattCcagcaagtgcagaatggaga	10	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5011924	5011924	C	A	SNP	MMP26	ENST00000300762	human	ensembl	69_37n	1	known	missense	c.417	p.F139L	0.749	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	-	no_errors	MMP26	HGNC	ENSG00000167346	177	0	0	122	20	14.08	-	-	-	A	5011924	C	A	5011924	3	1	275	1	0	0	0	0	1	0	0	0	9735	854	30	2	427	2	MMP26	11	5011924	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	868	5011924	129994592	3046	28733										
OR52A4	0	genome.wustl.edu	37	chr11	5142766	5142767	+	RNA	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccaataaatgtcagcacINSaaaaggcatgaacaaggtac							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5142766	5142767	-	A	INS	OR52A4	ENST00000481634	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	OR52A4	HGNC	ENSG00000205494	217	0	0	131	20	13.25	-	-	-	A	5142767	-	A	5142766	6	5	275	0	1	1	1	0	0	0	0	0	11182	478	17	0		0	OR52A4	11	5142766	RNA	INS	-	TCGA-AN-A046-01A-21W-A050-09	130842	5142766	129863750	3047	28734										
OR52A5	0	genome.wustl.edu	37	chr11	5153163	5153163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtattaaaggccttgaatCgtgcctccttctggggcagc	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5153163	5153163	C	T	SNP	OR52A5	ENST00000307388	human	ensembl	69_37n	-1	known	missense	c.710	p.R237Q	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	236	2	0.84	175	22	11.11	-	-	-	T	5153163	C	T	5153163	3	4	275	1	0	0	0	0	1	0	0	0	11183	884	31	1	243	1	OR52A5	11	5153163	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10397	5153163	129853353	3048	28735										
OR52A5	0	genome.wustl.edu	37	chr11	5153475	5153475	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaaaagatggtggcatgtCtcaaggggatacagatggcc	16	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5153475	5153475	C	A	SNP	OR52A5	ENST00000307388	human	ensembl	69_37n	-1	known	missense	c.398	p.R133I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	171	1	0.58	122	19	13.38	-	-	-	A	5153475	C	A	5153475	3	1	275	1	0	0	0	0	1	0	0	0	11183	913	32	2	555	2	OR52A5	11	5153475	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	312	5153475	129853041	3049	28736										
OR51B4	0	genome.wustl.edu	37	chr11	5322607	5322607	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggatatatgtgattaaaCgtgatatcagcacaggcgag	11	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5322607	5322607	C	T	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	silent	c.570	p.T190	0.588	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	159	0	0	94	13	12.04	-	-	-	T	5322607	C	T	5322607	2	4	275	1	0	0	0	0	0	0	0	1	11163	523	19	1		1	OR51B4	11	5322607	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	169132	5322607	129683909	3050	28737										
OR51B5	0	genome.wustl.edu	37	chr11	5364241	5364241	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcagaatgcatgtgaaaGaacatgggagtgacaataca	12	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5364241	5364241	G	T	SNP	OR51B5	ENST00000300773	human	ensembl	69_37n	-1	known	missense	c.514	p.L172I	0.869	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180	150	0	0	64	26	28.89	-	-	-	T	5364241	G	T	5364241	3	4	275	1	0	0	0	0	1	0	0	0	11164	942	33	2	428	2	OR51B5	11	5364241	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41634	5364241	129642275	3051	28738										
OR51B5	0	genome.wustl.edu	37	chr11	5364632	5364632	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaatgagaagaaggagggtGccattgccaaaaaggatgga	14	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5364632	5364632	G	A	SNP	OR51B5	ENST00000300773	human	ensembl	69_37n	-1	known	silent	c.123	p.G41	0.458	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180	239	0	0	163	27	14.21	-	-	-	A	5364632	G	A	5364632	2	1	275	1	0	0	0	0	0	0	0	1	11164	1306	46	4		4	OR51B5	11	5364632	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	391	5364632	129641884	3052	28739										
OR51B6	0	genome.wustl.edu	37	chr11	5373338	5373338	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctctatccagttgtagttTtatttgcaatggtcttgttg	9	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5373338	5373338	T	G	SNP	OR51B6	ENST00000380219	human	ensembl	69_37n	1	known	missense	c.601	p.L201V	0.078	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239	704	1	0.14	551	88	13.77	-	-	-	G	5373338	T	G	5373338	3	3	275	1	0	0	0	0	1	0	0	0	11165	1838	64	5	603	5	OR51B6	11	5373338	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	8706	5373338	129633178	3053	28740										
OR51M1	0	genome.wustl.edu	37	chr11	5411313	5411313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggtgctcatcgcactgTcctatggactcatcctgcac	8	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5411313	5411313	T	C	SNP	OR51M1	ENST00000328611	human	ensembl	69_37n	1	known	missense	c.685	p.S229P	0.905	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698	465	0	0	417	62	12.94	-	-	-	C	5411313	T	C	5411313	3	2	275	1	0	0	0	0	1	0	0	0	11176	1667	58	5	687	5	OR51M1	11	5411313	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	37975	5411313	129595203	3054	28741										
OR52H1	0	genome.wustl.edu	37	chr11	5566325	5566325	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatggtcttgggagtcaaGatggtggtatatctcaaggg	15	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5566325	5566325	G	T	SNP	OR52H1	ENST00000322653	human	ensembl	69_37n	-1	known	silent	c.429	p.I143	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52H1	HGNC	ENSG00000181616	256	0	0	251	34	11.93	-	-	-	T	5566325	G	T	5566325	2	4	275	1	0	0	0	0	0	0	0	1	11192	932	33	2		2	OR52H1	11	5566325	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155012	5566325	129440191	3055	28742										
OR52H1	0	genome.wustl.edu	37	chr11	5566459	5566459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatcctgggaatgtgatttCgcgagcccctagccaaaaga	11	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5566459	5566459	C	T	SNP	OR52H1	ENST00000322653	human	ensembl	69_37n	-1	known	missense	c.295	p.E99K	0.028	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52H1	HGNC	ENSG00000181616	131	0	0	145	29	16.38	-	-	-	T	5566459	C	T	5566459	3	4	275	1	0	0	0	0	1	0	0	0	11192	893	31	1	670	1	OR52H1	11	5566459	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134	5566459	129440057	3056	28743										
TRIM22	0	genome.wustl.edu	37	chr11	5730436	5730436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggctgccaatatttctcttCggggaaatattactgggaag	11	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5730436	5730436	C	T	SNP	TRIM22	ENST00000379965	human	ensembl	69_37n	1	known	missense	c.1055	p.S352L	0.944	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM22	HGNC	ENSG00000132274	712	0	0	576	88	13.25	-	-	-	T	5730436	C	T	5730436	3	4	275	1	0	0	0	0	1	0	0	0	16592	893	31	1	1081	1	TRIM22	11	5730436	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	163977	5730436	129276080	3057	28744										
OR52E6	0	genome.wustl.edu	37	chr11	5862809	5862809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccatgacagtgaagaaatGgatgaagaacatctgagaaa	10	6	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5862809	5862809	G	T	SNP	OR52E6	ENST00000379946	human	ensembl	69_37n	-1	known	missense	c.331	p.H111N	0.600	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409	431	0	0	296	48	13.95	-	-	-	T	5862809	G	T	5862809	3	4	275	1	0	0	0	0	1	0	0	0	11190	1348	47	4	624	4	OR52E6	11	5862809	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	132373	5862809	129143707	3058	28745										
OR56A3	0	genome.wustl.edu	37	chr11	5969100	5969100	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaactccgttattgtggaaGaaatgtcattgagaactgca	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	5969100	5969100	G	T	SNP	OR56A3	ENST00000329564	human	ensembl	69_37n	1	known	missense	c.524	p.R175I	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56A3	HGNC	ENSG00000184478	173	0	0	196	23	10.5	-	-	-	T	5969100	G	T	5969100	3	4	275	1	0	0	0	0	1	0	0	0	11207	942	33	2	526	2	OR56A3	11	5969100	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106291	5969100	129037416	3059	28746										
CNGA4	0	genome.wustl.edu	37	chr11	6261526	6261526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttacccaaatgcctttCgcattgccaagctgatgctt	7	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6261526	6261526	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	missense	c.502	p.R168C	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	70	0	0	32	11	25.58	-	-	-	T	6261526	C	T	6261526	3	4	275	1	0	0	0	0	1	0	0	0	3629	884	31	1	516	1	CNGA4	11	6261526	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	292426	6261526	128744990	3060	28747										
APBB1	0	genome.wustl.edu	37	chr11	6432248	6432248	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaggtgtatcaggcctttGgggcccaagggtgccatctc	13	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6432248	6432248	G	T	SNP	APBB1	ENST00000389906	human	ensembl	69_37n	-1	known	silent	c.330	p.P110	1.000	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,pfam_PTB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB1	HGNC	ENSG00000166313	87	0	0	83	17	17	-	-	-	T	6432248	G	T	6432248	2	4	275	1	0	0	0	0	0	0	0	1	760	1335	47	4		4	APBB1	11	6432248	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	170722	6432248	128574268	3061	28748										
HPX	0	genome.wustl.edu	37	chr11	6452484	6452484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtcacattctggggttgcGgaagggccttggctgcattc	15	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6452484	6452484	G	A	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	missense	c.1346	p.P449L	0.772	superfamily_Hemopexin/matrixin,pirsf_Hemopexin_chordata	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	277	0	0	158	71	30.74	-	-	-	A	6452484	G	A	6452484	3	1	275	1	0	0	0	0	1	0	0	0	7397	1116	39	1	46	1	HPX	11	6452484	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20236	6452484	128554032	3062	28749										
TRIM3	0	genome.wustl.edu	37	chr11	6479439	6479439	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttgttctgcagtgccgaGacgccctgctctgggaggat	14	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6479439	6479439	G	T	SNP	TRIM3	ENST00000345851	human	ensembl	69_37n	-1	known	silent	c.219	p.V73	0.994	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171	33	0	0	25	4	13.79	-	-	-	T	6479439	G	T	6479439	2	4	275	1	0	0	0	0	0	0	0	1	16600	929	33	2		2	TRIM3	11	6479439	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26955	6479439	128527077	3063	28750										
DNHD1	0	genome.wustl.edu	37	chr11	6585252	6585252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccaagcttcccacaactgCgtggcaaagaccctcagtca	8	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6585252	6585252	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.10182	p.C3394	0.000	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	72	0	0	55	13	19.12	-	-	-	T	6585252	C	T	6585252	2	4	275	1	0	0	0	0	0	0	0	1	4703	776	27	1		1	DNHD1	11	6585252	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	105813	6585252	128421264	3064	28751										
DNHD1	0	genome.wustl.edu	37	chr11	6587873	6587873	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggatctgggcctgaacatgGaaatactggaagaacagatg	13	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6587873	6587873	G	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	nonsense	c.11263	p.E3755*	0.161	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	200	0	0	128	20	13.51	-	-	-	T	6587873	G	T	6587873	4	4	275	1	0	0	0	0	0	1	0	0	4703	1175	41	2	11402	2	DNHD1	11	6587873	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2621	6587873	128418643	3065	28752										
TPP1	0	genome.wustl.edu	37	chr11	6636546	6636546	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctagagctcaggaacttCgttacagcttcctcctgaaa	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6636546	6636546	C	T	SNP	TPP1	ENST00000299427	human	ensembl	69_37n	-1	known	silent	c.1281	p.T427	0.132	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340	225	0	0	143	27	15.88	-	-	-	T	6636546	C	T	6636546	2	4	275	1	0	0	0	0	0	0	0	1	16507	871	31	1		1	TPP1	11	6636546	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48673	6636546	128369970	3066	28753										
DCHS1	0	genome.wustl.edu	37	chr11	6644713	6644713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagccccagcatccccgtCgattgcatgcagagtggtca	10	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6644713	6644713	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.8194	p.D2732N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	38	0	0	9	7	43.75	-	-	-	T	6644713	C	T	6644713	3	4	275	1	0	0	0	0	1	0	0	0	4318	884	31	1	1706	1	DCHS1	11	6644713	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8167	6644713	128361803	3067	28754										
DCHS1	0	genome.wustl.edu	37	chr11	6649860	6649860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggttctcacctaggatgCggtactgcaactgcccattg	11	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6649860	6649860	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.5363	p.R1788H	0.600	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	117	0	0	50	15	23.08	-	-	-	T	6649860	C	T	6649860	3	4	275	1	0	0	0	0	1	0	0	0	4318	768	27	1	4569	1	DCHS1	11	6649860	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5147	6649860	128356656	3068	28755										
DCHS1	0	genome.wustl.edu	37	chr11	6652319	6652319	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggctggcacttcgaggagGgctgccttggtcatgagcac	16	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6652319	6652319	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.3895	p.P1299A	0.867	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	44	0	0	21	7	25	-	-	-	C	6652319	G	C	6652319	3	2	275	1	0	0	0	0	1	0	0	0	4318	1232	43	4	6053	4	DCHS1	11	6652319	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2459	6652319	128354197	3069	28756										
OR2D3	0	genome.wustl.edu	37	chr11	6942438	6942438	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattctcatcttcctggattCtcgccttcacactcccatgt	4	16	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	6942438	6942438	C	A	SNP	OR2D3	ENST00000317834	human	ensembl	69_37n	1	known	missense	c.206	p.S69Y	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2D3	HGNC	ENSG00000178358	282	0	0	239	39	14.03	-	-	-	A	6942438	C	A	6942438	3	1	275	1	0	0	0	0	1	0	0	0	11068	913	32	2	208	2	OR2D3	11	6942438	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	290119	6942438	128064078	3070	28757										
ZNF214	0	genome.wustl.edu	37	chr11	7021298	7021298	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgatgaatgtgaagattaGaactgtgactaaaacccttt	8	6	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7021298	7021298	G	T	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	missense	c.1616	p.S539Y	0.885	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	300	2	0.66	237	37	13.5	-	-	-	T	7021298	G	T	7021298	3	4	275	1	0	0	0	0	1	0	0	0	17866	942	33	2	208	2	ZNF214	11	7021298	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	78860	7021298	127985218	3071	28758										
ZNF214	0	genome.wustl.edu	37	chr11	7021924	7021924	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatcacactcaattttataGaatttctcttctgtgtggac	5	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7021924	7021924	G	T	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	missense	c.990	p.F330L	0.946	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	181	0	0	140	21	13.04	-	-	-	T	7021924	G	T	7021924	3	4	275	1	0	0	0	0	1	0	0	0	17866	933	33	2	834	2	ZNF214	11	7021924	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	626	7021924	127984592	3072	28759										
ZNF214	0	genome.wustl.edu	37	chr11	7022736	7022736	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaggaaaaattttcatattCtaagtatctgaatttttctt	5	4	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7022736	7022736	C	A	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	nonsense	c.178	p.E60*	0.035	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	60	0	0	35	9	20.45	-	-	-	A	7022736	C	A	7022736	4	1	275	1	0	0	0	0	0	1	0	0	17866	922	32	2	1646	2	ZNF214	11	7022736	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	812	7022736	127983780	3073	28760										
NLRP14	0	genome.wustl.edu	37	chr11	7063937	7063937	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattaaccagctgaaagagaGaagctttgctcaattgatat	8	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7063937	7063937	G	T	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	missense	c.680	p.R227I	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	202	0	0	127	35	21.6	-	-	-	T	7063937	G	T	7063937	3	4	275	1	0	0	0	0	1	0	0	0	10548	942	33	2	690	2	NLRP14	11	7063937	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41201	7063937	127942579	3074	28761										
NLRP14	0	genome.wustl.edu	37	chr11	7078916	7078916	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgttttccaggctggaatCttgcaacctaactgtatttt	8	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7078916	7078916	C	A	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	missense	c.2300	p.S767Y	0.875	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	423	0	0	298	44	12.87	-	-	-	A	7078916	C	A	7078916	3	1	275	1	0	0	0	0	1	0	0	0	10548	913	32	2	2322	2	NLRP14	11	7078916	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14979	7078916	127927600	3075	28762										
NLRP14	0	genome.wustl.edu	37	chr11	7081264	7081264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttctgtgtgatgtctttCggcatccaagctgtaatctt	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7081264	7081264	C	T	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	missense	c.2773	p.R925W	0.003	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	363	0	0	289	48	14.24	-	-	-	T	7081264	C	T	7081264	3	4	275	1	0	0	0	0	1	0	0	0	10548	875	31	1	2803	1	NLRP14	11	7081264	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2348	7081264	127925252	3076	28763										
OLFML1	0	genome.wustl.edu	37	chr11	7531205	7531205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttctctatgtggtctacaGtactgggggccagggccctc	14	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7531205	7531205	G	T	SNP	OLFML1	ENST00000329293	human	ensembl	69_37n	1	known	missense	c.995	p.S332I	0.106	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML1	HGNC	ENSG00000183801	198	0	0	134	19	12.42	-	-	-	T	7531205	G	T	7531205	3	4	275	1	0	0	0	0	1	0	0	0	10929	1029	36	4	1005	4	OLFML1	11	7531205	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	449941	7531205	127475311	3077	28764										
PPFIBP2	0	genome.wustl.edu	37	chr11	7647047	7647047	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaacaggtggccctgaaaGatgcagaaattgagcgtctg	13	7	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7647047	7647047	G	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.751	p.D251Y	1.000	pfam_Integrase_Tn916-type_DNA-bd_N	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	225	0	0	143	26	15.38	-	-	-	T	7647047	G	T	7647047	3	4	275	1	0	0	0	0	1	0	0	0	12387	942	33	2	777	2	PPFIBP2	11	7647047	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	115842	7647047	127359469	3078	28765										
PPFIBP2	0	genome.wustl.edu	37	chr11	7674313	7674313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaagaagttcgatgaatCgacggactacatttgcccaa	8	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7674313	7674313	C	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.2495	p.S832L	0.995	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	139	0	0	43	23	34.85	-	-	-	T	7674313	C	T	7674313	3	4	275	1	0	0	0	0	1	0	0	0	12387	893	31	1	2585	1	PPFIBP2	11	7674313	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27266	7674313	127332203	3079	28766										
OR5P2	0	genome.wustl.edu	37	chr11	7817732	7817732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattgggcatcacataaatgAaggtaatggtcccatagaac	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7817732	7817732	A	C	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	missense	c.758	p.F253C	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	341	0	0	222	66	22.92	-	-	-	C	7817732	A	C	7817732	3	2	275	1	0	0	0	0	1	0	0	0	11251	246	9	5	214	5	OR5P2	11	7817732	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	143419	7817732	127188784	3080	28767										
OR10A3	0	genome.wustl.edu	37	chr11	7961060	7961060	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacacagctttgattttgtCttttcatttcagtagttgaa	6	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	7961060	7961060	C	A	SNP	OR10A3	ENST00000360759	human	ensembl	69_37n	-1	known	missense	c.8	p.R3I	0.013	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A3	HGNC	ENSG00000170683	198	0	0	219	25	10.25	-	-	-	A	7961060	C	A	7961060	3	1	275	1	0	0	0	0	1	0	0	0	10964	913	32	2	939	2	OR10A3	11	7961060	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	143328	7961060	127045456	3081	28768										
STK33	0	genome.wustl.edu	37	chr11	8478949	8478949	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatccaccttgtctcattCtctgagaaatgccctttcct	5	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	8478949	8478949	C	A	SNP	STK33	ENST00000315204	human	ensembl	69_37n	-1	known	missense	c.636	p.E212D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK33	HGNC	ENSG00000130413	339	0	0	202	26	11.4	-	-	-	A	8478949	C	A	8478949	3	1	275	1	0	0	0	0	1	0	0	0	15391	912	32	2	940	2	STK33	11	8478949	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	517889	8478949	126527567	3082	28769										
NRIP3	0	genome.wustl.edu	37	chr11	9005451	9005451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaaagagactgtctccacAaaagggatttcttccttgtc	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9005451	9005451	A	C	SNP	NRIP3	ENST00000309166	human	ensembl	69_37n	-1	known	missense	c.681	p.F227L	1.000	NULL	pfam_Peptidase_aspartic_euk-pred,superfamily_Peptidase_aspartic	-	no_errors	NRIP3	HGNC	ENSG00000175352	274	0	0	173	45	20.64	-	-	-	C	9005451	A	C	9005451	3	2	275	1	0	0	0	0	1	0	0	0	10727	127	5	5	52	5	NRIP3	11	9005451	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	526502	9005451	126001065	3083	28770										
SCUBE2	0	genome.wustl.edu	37	chr11	9069074	9069074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctttacggagccgcttctCggttcgctttacgatgcagc	12	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9069074	9069074	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	69_37n	-1	known	missense	c.1831	p.E611K	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	158	0	0	140	18	11.39	-	-	-	T	9069074	C	T	9069074	3	4	275	1	0	0	0	0	1	0	0	0	14033	893	31	1	1287	1	SCUBE2	11	9069074	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	63623	9069074	125937442	3084	28771										
IPO7	0	genome.wustl.edu	37	chr11	9459445	9459445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaataccttagaaaatcttCgcttccctaataatgttgaa	4	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9459445	9459445	C	T	SNP	IPO7	ENST00000379719	human	ensembl	69_37n	1	known	missense	c.2413	p.R805C	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339	103	0	0	139	16	10.32	-	-	-	T	9459445	C	T	9459445	3	4	275	1	0	0	0	0	1	0	0	0	7851	884	31	1	2495	1	IPO7	11	9459445	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	390371	9459445	125547071	3085	28772										
IPO7	0	genome.wustl.edu	37	chr11	9466643	9466643	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaattttatttgttttctaGaatccaaaatgattgagaag	6	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9466643	9466643	G	T	SNP	IPO7	ENST00000379719	human	ensembl	69_37n	1	known	splice_site	c.3020-1	e25-1	1.000	-	-	-	no_errors	IPO7	HGNC	ENSG00000205339	209	0	0	142	20	12.35	-	-	-	T	9466643	G	T	9466643	5	4	275	1	0	0	0	0	0	0	1	0	7851	956	33	2	3117	2	IPO7	11	9466643	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7198	9466643	125539873	3086	28773										
SBF2	0	genome.wustl.edu	37	chr11	9809272	9809272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttggttcaatttgtgctccAatttttcaatttcctgcaaa	5	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9809272	9809272	A	G	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.4946	p.L1649S	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	314	0	0	138	65	31.86	-	-	-	G	9809272	A	G	9809272	3	3	275	1	0	0	0	0	1	0	0	0	13946	131	5	5	623	5	SBF2	11	9809272	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	342629	9809272	125197244	3087	28774										
SBF2	0	genome.wustl.edu	37	chr11	9864205	9864205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttcattccatccaggacGatttactctttcttccacaa	3	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	9864205	9864205	G	A	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.3223	p.R1075C	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	221	1	0.45	174	21	10.77	-	-	-	A	9864205	G	A	9864205	3	1	275	1	0	0	0	0	1	0	0	0	13946	1058	37	1	2390	1	SBF2	11	9864205	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	54933	9864205	125142311	3088	28775										
USP47	0	genome.wustl.edu	37	chr11	11951662	11951662	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatattattctagtgctttCgcaaggtaagcaatttccta	8	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	11951662	11951662	C	T	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	silent	c.1650	p.F550	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	148	0	0	96	20	17.24	-	-	-	T	11951662	C	T	11951662	2	4	275	1	0	0	0	0	0	0	0	1	17175	883	31	1		1	USP47	11	11951662	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2087457	11951662	123054854	3089	28776										
USP47	0	genome.wustl.edu	37	chr11	11962036	11962036	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgctgctacaatgatttgCgtcttctcagtgtctccagt	8	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	11962036	11962036	C	T	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	missense	c.2314	p.R772C	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	459	0	0	323	49	13.14	-	-	-	T	11962036	C	T	11962036	3	4	275	1	0	0	0	0	1	0	0	0	17175	768	27	1	2120	1	USP47	11	11962036	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10374	11962036	123044480	3090	28777										
MICAL2	0	genome.wustl.edu	37	chr11	12263916	12263916	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctgccttctacccgcccGagggcgcaggctctttccgg	11	18	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	12263916	12263916	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	silent	c.2493	p.P831	0.808	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	127	0	0	60	26	30.23	-	-	-	A	12263916	G	A	12263916	2	1	275	1	0	0	0	0	0	0	0	1	9641	1045	37	1		1	MICAL2	11	12263916	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	301880	12263916	122742600	3091	28778										
MICAL2	0	genome.wustl.edu	37	chr11	12281400	12281400	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacactcccaccgaaagttCttgcgcagtggccgccattg	10	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	12281400	12281400	C	A	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	missense	c.3290	p.S1097Y	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	58	0	0	30	4	11.76	-	-	-	A	12281400	C	A	12281400	3	1	275	1	0	0	0	0	1	0	0	0	9641	913	32	2	3384	2	MICAL2	11	12281400	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17484	12281400	122725116	3092	28779										
ARNTL	0	genome.wustl.edu	37	chr11	13393860	13393860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacgactgcattctcatgTagttccacaaccagtgaacg	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	13393860	13393860	T	C	SNP	ARNTL	ENST00000403290	human	ensembl	69_37n	1	known	missense	c.971	p.V324A	0.979	prints_Nuc_translocat	pfam_PAS_fold,pfam_PAS_fold_3,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794	270	0	0	210	68	24.37	-	-	-	C	13393860	T	C	13393860	3	2	275	1	0	0	0	0	1	0	0	0	971	1638	57	5	1017	5	ARNTL	11	13393860	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1112460	13393860	121612656	3093	28780										
BTBD10	0	genome.wustl.edu	37	chr11	13443377	13443377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctcctttagcaatacgcGaggaagtactgataagttag	9	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	13443377	13443377	G	A	SNP	BTBD10	ENST00000278174	human	ensembl	69_37n	-1	known	missense	c.110	p.S37L	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	107	0	0	48	22	31.43	-	-	-	A	13443377	G	A	13443377	3	1	275	1	0	0	0	0	1	0	0	0	1546	1059	37	1	1345	1	BTBD10	11	13443377	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49517	13443377	121563139	3094	28781										
NUCB2	0	genome.wustl.edu	37	chr11	17331216	17331216	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagatttagatatgctaatCaaagcggtgagaataattcc	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	17331216	17331216	C	A	SNP	NUCB2	ENST00000323688	human	ensembl	69_37n	1	known	silent	c.477	p.I159	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NUCB2	HGNC	ENSG00000070081	261	0	0	178	30	14.42	-	-	-	A	17331216	C	A	17331216	2	1	275	1	0	0	0	0	0	0	0	1	10792	816	29	2		2	NUCB2	11	17331216	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3887839	17331216	117675300	3095	28782										
ABCC8	0	genome.wustl.edu	37	chr11	17483289	17483289	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttggacagcagattcacGaagggctgcaggaagcgtac	13	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	17483289	17483289	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	silent	c.663	p.F221	0.928	prints_Sulphorea_rcpt	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	315	1	0.32	203	84	29.27	-	-	-	A	17483289	G	A	17483289	2	1	275	1	0	0	0	0	0	0	0	1	58	1049	37	1		1	ABCC8	11	17483289	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	152073	17483289	117523227	3096	28783										
USH1C	0	genome.wustl.edu	37	chr11	17532027	17532027	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctccacccaatattgaatCttttccgattcttcaaggtc	4	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	17532027	17532027	C	A	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.1455	p.K485N	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	186	0	0	120	22	15.49	-	-	-	A	17532027	C	A	17532027	3	1	275	1	0	0	0	0	1	0	0	0	17131	912	32	2	1288	2	USH1C	11	17532027	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48738	17532027	117474489	3097	28784										
KCNC1	0	genome.wustl.edu	37	chr11	17794171	17794171	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctcttagaggcatgtcGatctgacctttcacctctgc	7	13	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	17794171	17794171	G	A	SNP	KCNC1	ENST00000379472	human	ensembl	69_37n	1	known	silent	c.1530	p.S510	0.519	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	17	0	0	6	4	40	-	-	-	A	17794171	G	A	17794171	2	1	275	1	0	0	0	0	0	0	0	1	8068	1045	37	1		1	KCNC1	11	17794171	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	262144	17794171	117212345	3098	28785										
SERGEF	0	genome.wustl.edu	37	chr11	17981062	17981062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagacgaaggcatgctgttCggtggtcttgaacaggggag	18	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	17981062	17981062	C	T	SNP	SERGEF	ENST00000529151	human	ensembl	69_37n	-1	putative	missense	c.557	p.R186Q	0.008	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SERGEF	HGNC	ENSG00000129158	205	0	0	172	63	26.81	-	-	-	T	17981062	C	T	17981062	3	4	275	1	0	0	0	0	1	0	0	0	14165	871	31	1	422	1	SERGEF	11	17981062	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	186891	17981062	117025454	3099	28786										
MRGPRX3	0	genome.wustl.edu	37	chr11	18159302	18159302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattacaatcgcgtggctgGtttttttatgtgtggttctc	10	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18159302	18159302	G	T	SNP	MRGPRX3	ENST00000396275	human	ensembl	69_37n	1	known	missense	c.553	p.V185F	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826	376	1	0.26	252	36	12.5	-	-	-	T	18159302	G	T	18159302	3	4	275	1	0	0	0	0	1	0	0	0	9840	1261	44	4	555	4	MRGPRX3	11	18159302	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	178240	18159302	116847214	3100	28787										
SAA4	0	genome.wustl.edu	37	chr11	18253073	18253073	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttcttaggcaggccgtcAggtctgaagcggtcggggtc	15	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18253073	18253073	A	G	SNP	SAA4	ENST00000278222	human	ensembl	69_37n	-1	known	silent	c.369	p.P123	0.121	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A	pfam_Serum_amyloid_A,superfamily_Actin_cross-linking,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	-	no_errors	SAA4	HGNC	ENSG00000148965	548	0	0	311	36	10.29	-	-	-	G	18253073	A	G	18253073	2	3	275	1	0	0	0	0	0	0	0	1	13886	175	7	5		5	SAA4	11	18253073	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	93771	18253073	116753443	3101	28788										
GTF2H1	0	genome.wustl.edu	37	chr11	18354748	18354748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcaaagatagatttacaAtcagccatatgtatgcagat	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18354748	18354748	A	G	SNP	GTF2H1	ENST00000265963	human	ensembl	69_37n	1	known	missense	c.127	p.I43V	0.999	pfam_TFIIH_BTF_p62_N	pfam_BSD,pfam_TFIIH_BTF_p62_N,smart_BSD,pfscan_BSD	-	no_errors	GTF2H1	HGNC	ENSG00000110768	173	0	0	128	31	19.5	-	-	-	G	18354748	A	G	18354748	3	3	275	1	0	0	0	0	1	0	0	0	6911	101	4	5	129	5	GTF2H1	11	18354748	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	101675	18354748	116651768	3102	28789										
GTF2H1	0	genome.wustl.edu	37	chr11	18373961	18373961	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttcaaagtattagacaaGaaatggaagcttatacaccc	6	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18373961	18373961	G	T	SNP	GTF2H1	ENST00000265963	human	ensembl	69_37n	1	known	nonsense	c.1228	p.E410*	1.000	NULL	pfam_BSD,pfam_TFIIH_BTF_p62_N,smart_BSD,pfscan_BSD	-	no_errors	GTF2H1	HGNC	ENSG00000110768	102	0	0	99	19	16.1	-	-	-	T	18373961	G	T	18373961	4	4	275	1	0	0	0	0	0	1	0	0	6911	943	33	2	1266	2	GTF2H1	11	18373961	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19213	18373961	116632555	3103	28790										
UEVLD	0	genome.wustl.edu	37	chr11	18600314	18600314	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgtgggaaaaatacattTacattccttagttcttccac	5	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18600314	18600314	T	C	SNP	UEVLD	ENST00000396197	human	ensembl	69_37n	-1	known	silent	c.84	p.V28	0.295	pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH	-	no_errors	UEVLD	HGNC	ENSG00000151116	137	0	0	127	18	12.41	-	-	-	C	18600314	T	C	18600314	2	2	275	1	0	0	0	0	0	0	0	1	17030	1741	61	5		5	UEVLD	11	18600314	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	226353	18600314	116406202	3104	28791										
SPTY2D1	0	genome.wustl.edu	37	chr11	18633886	18633886	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggtcataaccaaagatttCtctaatgtgcttggatattt	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18633886	18633886	C	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	nonsense	c.1861	p.E621*	1.000	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	183	1	0.54	141	30	17.54	-	-	-	A	18633886	C	A	18633886	4	1	275	1	0	0	0	0	0	1	0	0	15217	922	32	2	208	2	SPTY2D1	11	18633886	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33572	18633886	116372630	3105	28792										
SPTY2D1	0	genome.wustl.edu	37	chr11	18638427	18638427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctatagatacataccttttCgtctcagctcctcttctttc	4	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18638427	18638427	C	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	missense	c.170	p.R57Q	0.001	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	292	1	0.34	173	60	25.75	-	-	-	T	18638427	C	T	18638427	3	4	275	1	0	0	0	0	1	0	0	0	15217	884	31	1	1907	1	SPTY2D1	11	18638427	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4541	18638427	116368089	3106	28793										
IGSF22	0	genome.wustl.edu	37	chr11	18735828	18735828	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggacagatccatacctgcGatgaatacagaggcttcact	9	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18735828	18735828	G	A	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	silent	c.1794	p.I598	0.352	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	71	0	0	68	10	12.66	-	-	-	A	18735828	G	A	18735828	2	1	275	1	0	0	0	0	0	0	0	1	7654	1048	37	1		1	IGSF22	11	18735828	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	97401	18735828	116270688	3107	28794										
PTPN5	0	genome.wustl.edu	37	chr11	18751371	18751371	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctcagtcccactctgtcGaggagacagaggcccacccc	9	18	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	18751371	18751371	G	A	SNP	PTPN5	ENST00000396166	human	ensembl	69_37n	-1	putative	nonsense	c.142	p.R48*	0.001	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_KIM-con,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	81	0	0	33	15	31.25	-	-	-	A	18751371	G	A	18751371	4	1	275	1	0	0	0	0	0	1	0	0	12874	1073	37	1		1	PTPN5	11	18751371	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15543	18751371	116255145	3108	28795										
MRGPRX2	0	genome.wustl.edu	37	chr11	19077870	19077870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgggatcagggtctccttgCcacaaagcagaagaagggct	13	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	19077870	19077870	C	A	SNP	MRGPRX2	ENST00000329773	human	ensembl	69_37n	-1	known	missense	c.80	p.G27V	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695	81	0	0	33	11	24.44	-	-	-	A	19077870	C	A	19077870	3	1	275	1	0	0	0	0	1	0	0	0	9839	739	26	4	916	4	MRGPRX2	11	19077870	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	326499	19077870	115928646	3109	28796										
E2F8	0	genome.wustl.edu	37	chr11	19252194	19252194	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacctttgttggtcttgatAgggctactgggcgcagaatt	12	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	19252194	19252194	A	C	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	silent	c.1254	p.P418	0.051	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	148	0	0	151	20	11.7	-	-	-	C	19252194	A	C	19252194	2	2	275	1	0	0	0	0	0	0	0	1	4908	407	15	5		5	E2F8	11	19252194	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	174324	19252194	115754322	3110	28797										
NELL1	0	genome.wustl.edu	37	chr11	20699495	20699495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtggtgggctttgggatgGaccctgaccttcagatggat	15	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	20699495	20699495	G	A	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.73	p.D25N	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	692	0	0	384	46	10.7	-	-	-	A	20699495	G	A	20699495	3	1	275	1	0	0	0	0	1	0	0	0	10405	1174	41	2	79	2	NELL1	11	20699495	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1447301	20699495	114307021	3111	28798										
NELL1	0	genome.wustl.edu	37	chr11	21392488	21392488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattcacaggaagccactgcGagaaaggtaatctagcttgt	11	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	21392488	21392488	G	A	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	missense	c.1639	p.E547K	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	515	0	0	233	95	28.88	-	-	-	A	21392488	G	A	21392488	3	1	275	1	0	0	0	0	1	0	0	0	10405	1059	37	1	1697	1	NELL1	11	21392488	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	692993	21392488	113614028	3112	28799										
ANO5	0	genome.wustl.edu	37	chr11	22283680	22283680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttaacttaacagaaattCctcgaacataccaggagtat	5	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	22283680	22283680	C	A	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.1636	p.P546T	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	372	0	0	278	52	15.76	-	-	-	A	22283680	C	A	22283680	3	1	275	1	0	0	0	0	1	0	0	0	699	855	30	2	1698	2	ANO5	11	22283680	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	891192	22283680	112722836	3113	28800										
ANO5	0	genome.wustl.edu	37	chr11	22283790	22283790	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctttctttaaagggaagttCgtaggctatcctggaaaata	10	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	22283790	22283790	C	T	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	silent	c.1746	p.F582	0.959	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	419	0	0	245	107	30.4	-	-	-	T	22283790	C	T	22283790	2	4	275	1	0	0	0	0	0	0	0	1	699	883	31	1		1	ANO5	11	22283790	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110	22283790	112722726	3114	28801										
GAS2	0	genome.wustl.edu	37	chr11	22833429	22833429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgaaacacgacccctgccGaatgctgcagatctcccgtg	10	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	22833429	22833429	G	A	SNP	GAS2	ENST00000278187	human	ensembl	69_37n	1	known	missense	c.809	p.R270Q	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935	456	0	0	355	43	10.75	-	-	-	A	22833429	G	A	22833429	3	1	275	1	0	0	0	0	1	0	0	0	6295	1058	37	1	835	1	GAS2	11	22833429	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	549639	22833429	112173087	3115	28802										
GAS2	0	genome.wustl.edu	37	chr11	22833497	22833497	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaatctccaactctaaagGacatgaatccagataactac	5	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	22833497	22833497	G	T	SNP	GAS2	ENST00000278187	human	ensembl	69_37n	1	known	missense	c.877	p.D293Y	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935	311	1	0.32	215	30	12.24	-	-	-	T	22833497	G	T	22833497	3	4	275	1	0	0	0	0	1	0	0	0	6295	1174	41	2	903	2	GAS2	11	22833497	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68	22833497	112173019	3116	28803										
SLC5A12	0	genome.wustl.edu	37	chr11	26743194	26743194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcaaagaacaccccaattCcagaggaaatgaaaaagagg	10	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	26743194	26743194	C	T	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.68	p.G23E	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	168	0	0	144	24	14.29	-	-	-	T	26743194	C	T	26743194	3	4	275	1	0	0	0	0	1	0	0	0	14753	855	30	2	1848	2	SLC5A12	11	26743194	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3909697	26743194	108263322	3117	28804										
CCDC34	0	genome.wustl.edu	37	chr11	27371947	27371947	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatctttcttttttcacgttCttccatttcttttctttttt	1	9	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	27371947	27371947	C	A	SNP	CCDC34	ENST00000328697	human	ensembl	69_37n	-1	known	nonsense	c.538	p.E180*	1.000	NULL	NULL	-	no_errors	CCDC34	HGNC	ENSG00000109881	737	0	0	616	204	24.88	-	-	-	A	27371947	C	A	27371947	4	1	275	1	0	0	0	0	0	1	0	0	2833	922	32	2	683	2	CCDC34	11	27371947	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	628753	27371947	107634569	3118	28805										
LGR4	0	genome.wustl.edu	37	chr11	27405888	27405888	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgaatatacttacaaggtCtccaggttatctagtccatc	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	27405888	27405888	C	T	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	silent	c.684	p.E228	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	390	0	0	202	40	16.53	-	-	-	T	27405888	C	T	27405888	2	4	275	1	0	0	0	0	0	0	0	1	8811	912	32	2		2	LGR4	11	27405888	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33941	27405888	107600628	3119	28806										
MPPED2	0	genome.wustl.edu	37	chr11	30517053	30517053	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcaatcactattttatatTcatatggcaggtttcctgaa	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	30517053	30517053	T	C	SNP	MPPED2	ENST00000358117	human	ensembl	69_37n	-1	known	missense	c.326	p.E109G	1.000	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382	179	0	0	142	21	12.88	-	-	-	C	30517053	T	C	30517053	3	2	275	1	0	0	0	0	1	0	0	0	9814	1783	62	5	646	5	MPPED2	11	30517053	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3111165	30517053	104489463	3120	28807										
IMMP1L	0	genome.wustl.edu	37	chr11	31484792	31484792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatagtatagccaacaagtCgaaaggttttccccagaaca	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	31484792	31484792	C	T	SNP	IMMP1L	ENST00000278200	human	ensembl	69_37n	-1	known	missense	c.32	p.R11Q	1.000	NULL	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Pept_S26A_signal_pept_1,tigrfam_Pept_S26A_signal_pept_1	-	no_errors	IMMP1L	HGNC	ENSG00000148950	381	0	0	251	88	25.96	-	-	-	T	31484792	C	T	31484792	3	4	275	1	0	0	0	0	1	0	0	0	7770	884	31	1	488	1	IMMP1L	11	31484792	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	967739	31484792	103521724	3121	28808										
PAX6	0	genome.wustl.edu	37	chr11	31815653	31815653	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacatctggataatgggttCtctcaaactctgaaagagta	8	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	31815653	31815653	C	A	SNP	PAX6	ENST00000379107	human	ensembl	69_37n	-1	known	missense	c.734	p.R245I	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	165	0	0	135	20	12.9	-	-	-	A	31815653	C	A	31815653	3	1	275	1	0	0	0	0	1	0	0	0	11556	913	32	2	596	2	PAX6	11	31815653	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	330861	31815653	103190863	3122	28809										
CD59	0	genome.wustl.edu	37	chr11	33731767	33731767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaccattttcaagctgttCgttaaagttacacaggtcct	6	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	33731767	33731767	C	T	SNP	CD59	ENST00000351554	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	0.000	smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	CD59	HGNC	ENSG00000085063	122	0	0	86	37	30.08	-	-	-	T	33731767	C	T	33731767	3	4	275	1	0	0	0	0	1	0	0	0	3055	893	31	1	98	1	CD59	11	33731767	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1916114	33731767	101274749	3123	28810										
ABTB2	0	genome.wustl.edu	37	chr11	34378311	34378311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacgccccagagctcggcgtCgttgttgatgaccatctcca	11	14	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	34378311	34378311	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	missense	c.820	p.D274N	1.000	superfamily_Histone-fold	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	24	0	0	15	4	21.05	-	-	-	T	34378311	C	T	34378311	3	4	275	1	0	0	0	0	1	0	0	0	103	884	31	1	2325	1	ABTB2	11	34378311	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	646544	34378311	100628205	3124	28811										
PDHX	0	genome.wustl.edu	37	chr11	35016492	35016492	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggggatgtttggcatcgacGaatttactgcagtgattaac	12	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	35016492	35016492	G	T	SNP	PDHX	ENST00000227868	human	ensembl	69_37n	1	known	nonsense	c.1279	p.E427*	1.000	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	133	0	0	110	25	18.52	-	-	-	T	35016492	G	T	35016492	4	4	275	1	0	0	0	0	0	1	0	0	11740	1059	37	3	1440	3	PDHX	11	35016492	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	638181	35016492	99990024	3125	28812										
PRR5L	0	genome.wustl.edu	37	chr11	36458966	36458966	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgaggttctggctgaagtCtgggaccacttcttcactga	11	9	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	36458966	36458966	C	A	SNP	PRR5L	ENST00000378867	human	ensembl	69_37n	1	known	silent	c.384	p.V128	1.000	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362	377	0	0	244	99	28.86	-	-	-	A	36458966	C	A	36458966	2	1	275	1	0	0	0	0	0	0	0	1	12682	900	32	2		2	PRR5L	11	36458966	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1442474	36458966	98547550	3126	28813										
RAG1	0	genome.wustl.edu	37	chr11	36597340	36597340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgcttccaaagaggaaaGgaaaaggtggcaggccacac	12	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	36597340	36597340	G	T	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.2486	p.R829M	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	124	0	0	62	11	15.07	-	-	-	T	36597340	G	T	36597340	3	4	275	1	0	0	0	0	1	0	0	0	13086	1000	35	4	2488	4	RAG1	11	36597340	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	138374	36597340	98409176	3127	28814										
LRRC4C	0	genome.wustl.edu	37	chr11	40136877	40136877	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggcacaacaagctgtgttCgagggggccatgtcttttat	13	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	40136877	40136877	C	T	SNP	LRRC4C	ENST00000527150	human	ensembl	69_37n	-1	known	silent	c.966	p.S322	0.989	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	LRRC4C	HGNC	ENSG00000148948	133	0	0	100	18	15.13	-	-	-	T	40136877	C	T	40136877	2	4	275	1	0	0	0	0	0	0	0	1	9074	871	31	1		1	LRRC4C	11	40136877	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3539537	40136877	94869639	3128	28815										
API5	0	genome.wustl.edu	37	chr11	43342392	43342392	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcgacgtcaagcaattaaaGaactgcctcaatttgccact	6	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	43342392	43342392	G	T	SNP	API5	ENST00000531273	human	ensembl	69_37n	1	known	nonsense	c.253	p.E85*	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	303	0	0	134	38	22.09	-	-	-	T	43342392	G	T	43342392	4	4	275	1	0	0	0	0	0	1	0	0	774	943	33	2	263	2	API5	11	43342392	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3205515	43342392	91664124	3129	28816										
TTC17	0	genome.wustl.edu	37	chr11	43411364	43411364	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acataactttggagagcaaaGacatcaggtaaagaagttct	9	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	43411364	43411364	G	T	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.412	p.D138Y	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	222	0	0	204	23	10.13	-	-	-	T	43411364	G	T	43411364	3	4	275	1	0	0	0	0	1	0	0	0	16781	942	33	2	422	2	TTC17	11	43411364	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68972	43411364	91595152	3130	28817										
ACCSL	0	genome.wustl.edu	37	chr11	44075057	44075057	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctggaatttgccaagagGtatgagttctaccccttgag	10	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	44075057	44075057	G	A	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	splice_site	c.1049+1	e8+1	1.000	-	-	-	no_errors	ACCSL	HGNC	ENSG00000205126	181	0	0	135	19	12.34	-	-	-	A	44075057	G	A	44075057	5	1	275	1	0	0	0	0	0	0	1	0	134	1275	44	4	1080	4	ACCSL	11	44075057	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	663693	44075057	90931459	3131	28818										
EXT2	0	genome.wustl.edu	37	chr11	44257853	44257853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctggcaggtaaccccacGaaagaaattcaagtgtcctg	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	44257853	44257853	G	A	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.2045	p.R682Q	0.861	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	226	0	0	141	17	10.76	-	-	-	A	44257853	G	A	44257853	3	1	275	1	0	0	0	0	1	0	0	0	5361	1058	37	1	2192	1	EXT2	11	44257853	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	182796	44257853	90748663	3132	28819										
CKAP5	0	genome.wustl.edu	37	chr11	46819690	46819690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaccacttgaggtttcttCtctttgaatttctccaagat	6	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	46819690	46819690	C	A	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.1116	p.E372D	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	332	0	0	210	81	27.84	-	-	-	A	46819690	C	A	46819690	3	1	275	1	0	0	0	0	1	0	0	0	3475	912	32	2	5122	2	CKAP5	11	46819690	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2561837	46819690	88186826	3133	28820										
DDB2	0	genome.wustl.edu	37	chr11	47254427	47254427	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaataccaaccagttttaCgcctcctcaatggagggaac	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47254427	47254427	C	T	SNP	DDB2	ENST00000256996	human	ensembl	69_37n	1	known	silent	c.519	p.Y173	0.990	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574	248	0	0	256	110	29.97	-	-	-	T	47254427	C	T	47254427	2	4	275	1	0	0	0	0	0	0	0	1	4355	547	19	1		1	DDB2	11	47254427	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	434737	47254427	87752089	3134	28821										
MADD	0	genome.wustl.edu	37	chr11	47297573	47297573	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcgctccccagtacccgtCtctgggcagaagcgagtaga	12	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47297573	47297573	C	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	silent	c.783	p.V261	0.955	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	188	0	0	112	19	14.5	-	-	-	A	47297573	C	A	47297573	2	1	275	1	0	0	0	0	0	0	0	1	9219	900	32	2		2	MADD	11	47297573	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43146	47297573	87708943	3135	28822										
SPI1	0	genome.wustl.edu	37	chr11	47381533	47381533	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagctccgtgaagttgttCtcggcgaagctctcgaactc	12	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47381533	47381533	C	A	SNP	SPI1	ENST00000227163	human	ensembl	69_37n	-1	known	missense	c.204	p.E68D	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPI1	HGNC	ENSG00000066336	101	0	0	63	11	14.86	-	-	-	A	47381533	C	A	47381533	3	1	275	1	0	0	0	0	1	0	0	0	15140	912	32	2	623	2	SPI1	11	47381533	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83960	47381533	87624983	3136	28823										
KBTBD4	0	genome.wustl.edu	37	chr11	47599453	47599453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctagacacagtttcatgatGccttgagccacacggcctga	9	12	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47599453	47599453	G	A	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	silent	c.147	p.G49	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	74	0	0	62	7	10.14	-	-	-	A	47599453	G	A	47599453	2	1	275	1	0	0	0	0	0	0	0	1	8049	1306	46	4		4	KBTBD4	11	47599453	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	217920	47599453	87407063	3137	28824										
FNBP4	0	genome.wustl.edu	37	chr11	47744641	47744641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctataatggtagcggtagGcacagcacctcgggcctgaa	12	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47744641	47744641	G	A	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.2692	p.P898S	0.611	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	104	0	0	65	12	15.58	-	-	-	A	47744641	G	A	47744641	3	1	275	1	0	0	0	0	1	0	0	0	6013	1203	42	4	373	4	FNBP4	11	47744641	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	145188	47744641	87261875	3138	28825										
FNBP4	0	genome.wustl.edu	37	chr11	47755644	47755644	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgcctagaaactcgaatTtacttgtcagggtatttgcc	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	47755644	47755644	T	G	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.1619	p.K540T	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	306	0	0	230	83	26.52	-	-	-	G	47755644	T	G	47755644	3	3	275	1	0	0	0	0	1	0	0	0	6013	1841	64	5	1466	5	FNBP4	11	47755644	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	11003	47755644	87250872	3139	28826										
FOLH1	0	genome.wustl.edu	37	chr11	49178274	49178274	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgagattcacttacccaatTtttagtataccgtgctctgc	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	49178274	49178274	T	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.1618	p.N540H	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	508	0	0	284	135	32.22	-	-	-	G	49178274	T	G	49178274	3	3	275	1	0	0	0	0	1	0	0	0	6025	1841	64	5	654	5	FOLH1	11	49178274	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1422630	49178274	85828242	3140	28827										
OR4A15	0	genome.wustl.edu	37	chr11	55135707	55135707	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgttgacttgctctctgaGaaaaagaccatttcctttca	6	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55135707	55135707	G	A	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	silent	c.348	p.E116	0.074	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	181	0	0	145	20	12.12	-	-	-	A	55135707	G	A	55135707	2	1	275	1	0	0	0	0	0	0	0	1	11113	933	33	2		2	OR4A15	11	55135707	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5957433	55135707	79870809	3141	28828										
OR4C15	0	genome.wustl.edu	37	chr11	55322215	55322215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctctatgtgacaaaaaccAtctcttttgaaggctgcatg	7	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55322215	55322215	A	G	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	missense	c.433	p.I145V	0.988	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	297	0	0	157	53	25.12	-	-	-	G	55322215	A	G	55322215	3	3	275	1	0	0	0	0	1	0	0	0	11121	217	8	5	435	5	OR4C15	11	55322215	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	186508	55322215	79684301	3142	28829										
OR4C15	0	genome.wustl.edu	37	chr11	55322697	55322697	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgtgattttgttctttgtCccatgcatatttgtatatac	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55322697	55322697	C	T	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	silent	c.915	p.V305	0.050	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	1135	0	0	625	83	11.72	-	-	-	T	55322697	C	T	55322697	2	4	275	1	0	0	0	0	0	0	0	1	11121	842	30	2		2	OR4C15	11	55322697	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	482	55322697	79683819	3143	28830										
OR4S2	0	genome.wustl.edu	37	chr11	55418432	55418432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctggggtctttctcagaGcccagagattgagaaagttt	11	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55418432	55418432	G	A	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.53	p.S18N	0.014	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	144	0	0	44	67	60.36	-	-	-	A	55418432	G	A	55418432	3	1	275	1	0	0	0	0	1	0	0	0	11156	971	34	4	55	4	OR4S2	11	55418432	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	95735	55418432	79588084	3144	28831										
OR5D14	0	genome.wustl.edu	37	chr11	55563726	55563726	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactgtactaaaaatccgttCtgttagtgggcgccacaaag	10	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55563726	55563726	C	A	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	missense	c.695	p.S232Y	0.071	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	181	0	0	133	16	10.74	-	-	-	A	55563726	C	A	55563726	3	1	275	1	0	0	0	0	1	0	0	0	11228	913	32	2	697	2	OR5D14	11	55563726	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	145294	55563726	79442790	3145	28832										
OR5L1	0	genome.wustl.edu	37	chr11	55579820	55579820	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgtgatctacagcctgaGaaataaagatgtgaaagaag	10	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55579820	55579820	G	T	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.878	p.R293I	0.699	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	94	0	0	46	18	28.12	-	-	-	T	55579820	G	T	55579820	3	4	275	1	0	0	0	0	1	0	0	0	11243	942	33	2	880	2	OR5L1	11	55579820	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16094	55579820	79426696	3146	28833										
OR10AG1	0	genome.wustl.edu	37	chr11	55735853	55735853	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgccattgcacatcagGatcatcaaatacataagtaa	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55735853	55735853	G	A	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	silent	c.87	p.I29	0.006	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	43	0	0	19	7	26.92	-	-	-	A	55735853	G	A	55735853	2	1	275	1	0	0	0	0	0	0	0	1	10970	1164	41	2		2	OR10AG1	11	55735853	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	156033	55735853	79270663	3147	28834										
OR5F1	0	genome.wustl.edu	37	chr11	55761832	55761832	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccagcaaaagagatggtTttcttctctgataataaatc	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55761832	55761832	T	C	SNP	OR5F1	ENST00000278409	human	ensembl	69_37n	-1	known	silent	c.270	p.K90	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133	190	1	0.52	117	17	12.69	-	-	-	C	55761832	T	C	55761832	2	2	275	1	0	0	0	0	0	0	0	1	11231	1838	64	5		5	OR5F1	11	55761832	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	25979	55761832	79244684	3148	28835										
OR5AS1	0	genome.wustl.edu	37	chr11	55797903	55797903	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaaaactaagatgttggaGagtaattacaccatgccaac	8	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55797903	55797903	G	T	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	missense	c.9	p.E3D	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	271	0	0	129	48	27.12	-	-	-	T	55797903	G	T	55797903	3	4	275	1	0	0	0	0	1	0	0	0	11219	933	33	2	11	2	OR5AS1	11	55797903	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36071	55797903	79208613	3149	28836										
OR8I2	0	genome.wustl.edu	37	chr11	55860882	55860882	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttcttgatgtttctcttCatttatctattcactgtttt	3	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55860882	55860882	C	T	SNP	OR8I2	ENST00000302124	human	ensembl	69_37n	1	known	silent	c.99	p.F33	0.094	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154	455	0	0	251	66	20.82	-	-	-	T	55860882	C	T	55860882	2	4	275	1	0	0	0	0	0	0	0	1	11313	825	29	2		2	OR8I2	11	55860882	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	62979	55860882	79145634	3150	28837										
OR8H2	0	genome.wustl.edu	37	chr11	55872981	55872981	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttatgtgattggctttataGactcctttgtcaacgtggtt	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55872981	55872981	G	T	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.463	p.D155Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	453	0	0	333	45	11.9	-	-	-	T	55872981	G	T	55872981	3	4	275	1	0	0	0	0	1	0	0	0	11311	942	33	2	465	2	OR8H2	11	55872981	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12099	55872981	79133535	3151	28838										
OR8H3	0	genome.wustl.edu	37	chr11	55890734	55890734	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatagtcttagaaacagaGaagtgaaaaatgctctcatt	7	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55890734	55890734	G	T	SNP	OR8H3	ENST00000313472	human	ensembl	69_37n	1	known	nonsense	c.886	p.E296*	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H3	HGNC	ENSG00000181761	150	0	0	97	49	33.56	-	-	-	T	55890734	G	T	55890734	4	4	275	1	0	0	0	0	0	1	0	0	11312	943	33	2	888	2	OR8H3	11	55890734	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17753	55890734	79115782	3152	28839										
OR5J2	0	genome.wustl.edu	37	chr11	55944375	55944375	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaggcaacaatttctttCtctgcttgcatggtacagca	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	55944375	55944375	C	A	SNP	OR5J2	ENST00000312298	human	ensembl	69_37n	1	known	missense	c.282	p.F94L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	119	0	0	88	37	29.6	-	-	-	A	55944375	C	A	55944375	3	1	275	1	0	0	0	0	1	0	0	0	11238	912	32	2	284	2	OR5J2	11	55944375	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	53641	55944375	79062141	3153	28840										
OR5T3	0	genome.wustl.edu	37	chr11	56019923	56019923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgttggtcattgaggattCctggctccacaaccccatgt	10	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56019923	56019923	C	T	SNP	OR5T3	ENST00000303059	human	ensembl	69_37n	1	known	missense	c.248	p.S83F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T3	HGNC	ENSG00000172489	191	0	0	170	30	15	-	-	-	T	56019923	C	T	56019923	3	4	275	1	0	0	0	0	1	0	0	0	11256	855	30	2	250	2	OR5T3	11	56019923	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75548	56019923	78986593	3154	28841										
OR5T1	0	genome.wustl.edu	37	chr11	56043242	56043242	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcttcctatttttattatTtttagcaatctatctattca	2	7	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56043242	56043242	T	G	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.128	p.F43C	0.255	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	148	0	0	153	26	14.53	-	-	-	G	56043242	T	G	56043242	3	3	275	1	0	0	0	0	1	0	0	0	11254	1841	64	5	130	5	OR5T1	11	56043242	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	23319	56043242	78963274	3155	28842										
OR5T1	0	genome.wustl.edu	37	chr11	56043320	56043320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggggatttctggcttcacaGcccaatgtactattttcttg	9	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56043320	56043320	G	A	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.206	p.S69N	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	193	0	0	148	49	24.87	-	-	-	A	56043320	G	A	56043320	3	1	275	1	0	0	0	0	1	0	0	0	11254	971	34	4	208	4	OR5T1	11	56043320	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	78	56043320	78963196	3156	28843										
OR8H1	0	genome.wustl.edu	37	chr11	56057709	56057710	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgggaatcacaatagtatINSaaaaaacagaagccacttga							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56057709	56057710	-	A	INS	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	frame_shift_ins	c.830_829	p.Y277fs	0.003:0.003	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	186	0	0	96	47	32.87	-	-	-	A	56057710	-	A	56057709	7	5	275	1	0	1	1	0	0	0	0	0	11310	1406	49	0	107	0	OR8H1	11	56057709	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	14389	56057709	78948807	3157	28844										
OR8H1	0	genome.wustl.edu	37	chr11	56058019	56058019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtgtcgcagaaaaagtgacGaactacatttgagtcgcaga	11	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56058019	56058019	G	A	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	missense	c.520	p.R174C	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	101	1	0.98	64	28	30.43	-	-	-	A	56058019	G	A	56058019	3	1	275	1	0	0	0	0	1	0	0	0	11310	1058	37	1	417	1	OR8H1	11	56058019	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	310	56058019	78948497	3158	28845										
OR8H1	0	genome.wustl.edu	37	chr11	56058173	56058173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaggactgcagatagctacGtagcgatcataggccattga	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56058173	56058173	G	A	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	silent	c.366	p.Y122	0.051	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	206	0	0	156	21	11.86	-	-	-	A	56058173	G	A	56058173	2	1	275	1	0	0	0	0	0	0	0	1	11310	1140	40	1		1	OR8H1	11	56058173	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154	56058173	78948343	3159	28846										
OR8K3	0	genome.wustl.edu	37	chr11	56085818	56085818	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaacaacggtgaatgaattCattcttacgggaatcacaga	8	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56085818	56085818	C	T	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	1	known	silent	c.36	p.F12	0.173	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	100	0	0	113	44	27.67	-	-	-	T	56085818	C	T	56085818	2	4	275	1	0	0	0	0	0	0	0	1	11317	825	29	2		2	OR8K3	11	56085818	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27645	56085818	78920698	3160	28847										
OR8K3	0	genome.wustl.edu	37	chr11	56086249	56086249	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctattgcacattcatttCtcttctagtcaccataaaga	3	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56086249	56086249	C	A	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	1	known	missense	c.467	p.S156Y	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	133	0	0	140	61	30.35	-	-	-	A	56086249	C	A	56086249	3	1	275	1	0	0	0	0	1	0	0	0	11317	913	32	2	469	2	OR8K3	11	56086249	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	431	56086249	78920267	3161	28848										
OR8K1	0	genome.wustl.edu	37	chr11	56114361	56114361	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgataaaatggcctcagtgTtttataccctgttgattcct	7	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56114361	56114361	T	C	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.847	p.F283L	0.821	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	104	0	0	80	12	12.9	-	-	-	C	56114361	T	C	56114361	3	2	275	1	0	0	0	0	1	0	0	0	11316	1725	60	5	849	5	OR8K1	11	56114361	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	28112	56114361	78892155	3162	28849										
OR8J1	0	genome.wustl.edu	37	chr11	56128234	56128234	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgtgtcttattgctcttCtaatataatcaatcattttt	3	8	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56128234	56128234	C	A	SNP	OR8J1	ENST00000303039	human	ensembl	69_37n	1	known	missense	c.512	p.S171Y	0.038	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8J1	HGNC	ENSG00000172487	471	0	0	337	67	16.58	-	-	-	A	56128234	C	A	56128234	3	1	275	1	0	0	0	0	1	0	0	0	11314	913	32	2	514	2	OR8J1	11	56128234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13873	56128234	78878282	3163	28850										
OR5M1	0	genome.wustl.edu	37	chr11	56380307	56380307	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagaacggatcctgaagatCgctgcaaaaatgaaaagata	10	7	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56380307	56380307	C	T	SNP	OR5M1	ENST00000526538	human	ensembl	69_37n	-1	known	silent	c.672	p.A224	0.128	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M1	HGNC	ENSG00000255012	223	0	0	168	30	15.15	-	-	-	T	56380307	C	T	56380307	2	4	275	1	0	0	0	0	0	0	0	1	11245	871	31	1		1	OR5M1	11	56380307	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	252073	56380307	78626209	3164	28851										
OR5AK2	0	genome.wustl.edu	37	chr11	56756424	56756424	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcactgaagtcactgaattCtatcttctgggatttggtgc	10	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	56756424	56756424	C	A	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.36	p.F12L	0.268	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	243	0	0	183	26	12.38	-	-	-	A	56756424	C	A	56756424	3	1	275	1	0	0	0	0	1	0	0	0	11215	912	32	2	38	2	OR5AK2	11	56756424	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	376117	56756424	78250092	3165	28852										
SLC43A1	0	genome.wustl.edu	37	chr11	57263539	57263539	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggggcaggaaaggcttcGatgggccagttgagggtgca	18	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	57263539	57263539	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	69_37n	-1	known	silent	c.657	p.I219	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150	140	0	0	65	15	18.75	-	-	-	A	57263539	G	A	57263539	2	1	275	1	0	0	0	0	0	0	0	1	14721	1048	37	1		1	SLC43A1	11	57263539	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	507115	57263539	77742977	3166	28853										
C11orf31	0	genome.wustl.edu	37	chr11	57509323	57509323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcaacgccgcggccctgagCcaggcgctgcgcctggaggc	16	17	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	57509323	57509323	C	T	SNP	C11orf31	ENST00000528798	human	ensembl	69_37n	1	known	missense	c.79	p.P27S	0.999	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C11orf31	HGNC	ENSG00000211450	60	0	0	48	19	28.36	-	-	-	T	57509323	C	T	57509323	3	4	275	1	0	0	0	0	1	0	0	0	1648	738	26	4	171	4	C11orf31	11	57509323	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245784	57509323	77497193	3167	28854										
CTNND1	0	genome.wustl.edu	37	chr11	57569630	57569630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcccttgtgcgattgcttcGaaaggctcgtgatatggacc	12	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	57569630	57569630	G	A	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	missense	c.1382	p.R461Q	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	189	0	0	157	19	10.8	-	-	-	A	57569630	G	A	57569630	3	1	275	1	0	0	0	0	1	0	0	0	4051	1058	37	1	1400	1	CTNND1	11	57569630	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	60307	57569630	77436886	3168	28855										
OR9Q1	0	genome.wustl.edu	37	chr11	57947737	57947737	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagaagaatcgggtagtgtCtgtgctttacacagaggtca	14	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	57947737	57947737	C	A	SNP	OR9Q1	ENST00000335397	human	ensembl	69_37n	1	known	missense	c.821	p.S274Y	0.916	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9Q1	HGNC	ENSG00000186509	207	0	0	179	30	14.35	-	-	-	A	57947737	C	A	57947737	3	1	275	1	0	0	0	0	1	0	0	0	11328	913	32	2	823	2	OR9Q1	11	57947737	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	378107	57947737	77058779	3169	28856										
OR1S1	0	genome.wustl.edu	37	chr11	57982722	57982722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcctcagtaatattattgCtctgacacacacccttctgc	5	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	57982722	57982722	C	T	SNP	OR1S1	ENST00000309433	human	ensembl	69_37n	1	known	missense	c.506	p.A169V	0.597	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774	146	0	0	155	27	14.84	-	-	-	T	57982722	C	T	57982722	3	4	275	1	0	0	0	0	1	0	0	0	11045	797	28	4	508	4	OR1S1	11	57982722	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34985	57982722	77023794	3170	28857										
FAM111A	0	genome.wustl.edu	37	chr11	58920169	58920169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaacaaaaaattcttcttCgattaaagtagtgaaacttc	5	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	58920169	58920169	C	T	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	missense	c.1028	p.S343L	0.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	105	1	0.94	86	19	18.1	-	-	-	T	58920169	C	T	58920169	3	4	275	1	0	0	0	0	1	0	0	0	5439	893	31	1	1034	1	FAM111A	11	58920169	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	937447	58920169	76086347	3171	28858										
MPEG1	0	genome.wustl.edu	37	chr11	58979275	58979275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaaaattgaagttgggaGaattgagatctgtgcagcca	12	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	58979275	58979275	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	missense	c.1064	p.S355F	0.934	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	220	0	0	132	35	20.96	-	-	-	A	58979275	G	A	58979275	3	1	275	1	0	0	0	0	1	0	0	0	9795	942	33	2	1090	2	MPEG1	11	58979275	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	59106	58979275	76027241	3172	28859										
OR4D10	0	genome.wustl.edu	37	chr11	59245287	59245287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatgtggccatctccaagCccctgcactatgcgactatc	8	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59245287	59245287	C	T	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.385	p.P129S	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	269	1	0.37	182	25	12.02	-	-	-	T	59245287	C	T	59245287	3	4	275	1	0	0	0	0	1	0	0	0	11127	739	26	4	387	4	OR4D10	11	59245287	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	266012	59245287	75761229	3173	28860										
OR4D10	0	genome.wustl.edu	37	chr11	59245300	59245300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaagcccctgcactatgCgactatcatgagtagagacc	8	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59245300	59245300	C	T	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.398	p.A133V	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	288	1	0.35	193	30	13.45	-	-	-	T	59245300	C	T	59245300	3	4	275	1	0	0	0	0	1	0	0	0	11127	768	27	1	400	1	OR4D10	11	59245300	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13	59245300	75761216	3174	28861										
OR4D10	0	genome.wustl.edu	37	chr11	59245562	59245562	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctggtgtcctacatagtCatattatcattacccaagtc	5	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59245562	59245562	C	A	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	silent	c.660	p.V220	0.986	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	167	0	0	141	22	13.5	-	-	-	A	59245562	C	A	59245562	2	1	275	1	0	0	0	0	0	0	0	1	11127	813	29	2		2	OR4D10	11	59245562	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	262	59245562	75760954	3175	28862										
PATL1	0	genome.wustl.edu	37	chr11	59418265	59418265	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtttttctcctcttgtctcGaacttgtttttcttttgtct	6	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59418265	59418265	G	A	SNP	PATL1	ENST00000300146	human	ensembl	69_37n	-1	known	nonsense	c.1546	p.R516*	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889	280	1	0.35	227	77	25.25	-	-	-	A	59418265	G	A	59418265	4	1	275	1	0	0	0	0	0	1	0	0	11548	1066	37	1	794	1	PATL1	11	59418265	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	172703	59418265	75588251	3176	28863										
MRPL16	0	genome.wustl.edu	37	chr11	59574021	59574021	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggctcacagcctttgctgcGaagggcaacttgtgggcaac	13	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59574021	59574021	G	A	SNP	MRPL16	ENST00000300151	human	ensembl	69_37n	-1	known	silent	c.555	p.F185	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	-	no_errors	MRPL16	HGNC	ENSG00000166902	206	0	0	158	34	17.71	-	-	-	A	59574021	G	A	59574021	2	1	275	1	0	0	0	0	0	0	0	1	9853	1049	37	1		1	MRPL16	11	59574021	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155756	59574021	75432495	3177	28864										
GIF	0	genome.wustl.edu	37	chr11	59604795	59604795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttgcagttccattccttTttagatggctcaggtgttac	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59604795	59604795	T	G	SNP	GIF	ENST00000257248	human	ensembl	69_37n	-1	known	missense	c.723	p.K241N	0.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812	351	0	0	206	101	32.9	-	-	-	G	59604795	T	G	59604795	3	3	275	1	0	0	0	0	1	0	0	0	6428	1838	64	5	546	5	GIF	11	59604795	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	30774	59604795	75401721	3178	28865										
MS4A2	0	genome.wustl.edu	37	chr11	59863031	59863031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgatttttcccttatcagGttccagaggatcgtgtttat	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59863031	59863031	G	A	SNP	MS4A2	ENST00000278888	human	ensembl	69_37n	1	known	missense	c.637	p.V213I	0.998	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	316	0	0	290	105	26.58	-	-	-	A	59863031	G	A	59863031	3	1	275	1	0	0	0	0	1	0	0	0	9932	1275	44	4	714	4	MS4A2	11	59863031	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	258236	59863031	75143485	3179	28866										
MS4A2	0	genome.wustl.edu	37	chr11	59863121	59863121	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaaatgtctcctcccattGatttataagaatcacgtgtc	8	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	59863121	59863121	G	T	SNP	MS4A2	ENST00000278888	human	ensembl	69_37n	1	known	missense	c.727	p.D243Y	0.001	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	258	1	0.39	227	60	20.91	-	-	-	T	59863121	G	T	59863121	3	4	275	1	0	0	0	0	1	0	0	0	9932	1290	45	2	804	2	MS4A2	11	59863121	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90	59863121	75143395	3180	28867										
MS4A7	0	genome.wustl.edu	37	chr11	60157008	60157008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctatcctcattgccttattCggagtactattatccaatat	4	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	60157008	60157008	C	T	SNP	MS4A7	ENST00000300184	human	ensembl	69_37n	1	known	missense	c.485	p.S162L	0.054	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A7	HGNC	ENSG00000166927	218	0	0	157	53	25.12	-	-	-	T	60157008	C	T	60157008	3	4	275	1	0	0	0	0	1	0	0	0	9938	893	31	1	499	1	MS4A7	11	60157008	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	293887	60157008	74849508	3181	28868										
DAK	0	genome.wustl.edu	37	chr11	61111711	61111711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccgggctgctggtgacggCgactgtggcaccacccacag	15	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	61111711	61111711	C	T	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	silent	c.1206	p.G402	0.794	pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	41	0	0	10	4	28.57	-	-	-	T	61111711	C	T	61111711	2	4	275	1	0	0	0	0	0	0	0	1	4260	755	27	1		1	DAK	11	61111711	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	954703	61111711	73894805	3182	28869										
C11orf9	0	genome.wustl.edu	37	chr11	61538993	61538993	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccctacacacccctccaaGaagaggaagcactctgaatc	6	16	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	61538993	61538993	G	A	SNP	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	silent	c.762	p.K254	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	33	0	0	14	6	30	-	-	-	A	61538993	G	A	61538993	2	1	275	1	0	0	0	0	0	0	0	1	1682	933	33	2		2	C11orf9	11	61538993	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	427282	61538993	73467523	3183	28870										
FEN1	0	genome.wustl.edu	37	chr11	61562967	61562967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttatcagttcctgattgCtgttcgccagggtggggatg	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	61562967	61562967	C	T	SNP	FEN1	ENST00000305885	human	ensembl	69_37n	1	known	missense	c.134	p.A45V	1.000	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	FEN1	HGNC	ENSG00000168496	76	0	0	33	9	21.43	-	-	-	T	61562967	C	T	61562967	3	4	275	1	0	0	0	0	1	0	0	0	5858	797	28	4	136	4	FEN1	11	61562967	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23974	61562967	73443549	3184	28871										
FEN1	0	genome.wustl.edu	37	chr11	61563050	61563050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatgttctaccgcaccattCgcatgatggagaacggcatc	10	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	61563050	61563050	C	T	SNP	FEN1	ENST00000305885	human	ensembl	69_37n	1	known	missense	c.217	p.R73C	1.000	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	FEN1	HGNC	ENSG00000168496	63	0	0	31	8	20.51	-	-	-	T	61563050	C	T	61563050	3	4	275	1	0	0	0	0	1	0	0	0	5858	884	31	1	219	1	FEN1	11	61563050	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83	61563050	73443466	3185	28872										
FADS1	0	genome.wustl.edu	37	chr11	61569894	61569894	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctgttgttattggtgaaGataggcatctagccagagct	13	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	61569894	61569894	G	T	SNP	FADS1	ENST00000350997	human	ensembl	69_37n	-1	known	missense	c.1495	p.L499I	1.000	pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5,prints_Cyt_B5	-	no_errors	FADS1	HGNC	ENSG00000149485	154	0	0	108	12	10	-	-	-	T	61569894	G	T	61569894	3	4	275	1	0	0	0	0	1	0	0	0	5405	942	33	2	14	2	FADS1	11	61569894	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6844	61569894	73436622	3186	28873										
AHNAK	0	genome.wustl.edu	37	chr11	62285595	62285595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacacctggccccttcagttCgccagaaacctgtggcccct	8	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62285595	62285595	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.16294	p.E5432K	0.490	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	125	0	0	75	28	26.92	-	-	-	T	62285595	C	T	62285595	3	4	275	1	0	0	0	0	1	0	0	0	414	893	31	1	1498	1	AHNAK	11	62285595	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	715701	62285595	72720921	3187	28874										
AHNAK	0	genome.wustl.edu	37	chr11	62286646	62286646	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttttccaaacatcgttttCttggttttgggcgatttcac	7	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62286646	62286646	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.15243	p.K5081N	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	156	0	0	66	16	19.51	-	-	-	A	62286646	C	A	62286646	3	1	275	1	0	0	0	0	1	0	0	0	414	912	32	2	2549	2	AHNAK	11	62286646	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1051	62286646	72719870	3188	28875										
AHNAK	0	genome.wustl.edu	37	chr11	62295891	62295891	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccctttgactttggggcCtttcaggtgtaagtccacat	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62295891	62295891	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.5998	p.G2000C	0.993	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	283	0	0	210	37	14.98	-	-	-	A	62295891	C	A	62295891	3	1	275	1	0	0	0	0	1	0	0	0	414	681	24	4	11794	4	AHNAK	11	62295891	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9245	62295891	72710625	3189	28876										
AHNAK	0	genome.wustl.edu	37	chr11	62297185	62297185	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtatattcatgcttggcatCttgaacttagggccttttag	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62297185	62297185	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.4704	p.K1568N	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	84	0	0	67	9	11.84	-	-	-	A	62297185	C	A	62297185	3	1	275	1	0	0	0	0	1	0	0	0	414	912	32	2	13088	2	AHNAK	11	62297185	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1294	62297185	72709331	3190	28877										
EML3	0	genome.wustl.edu	37	chr11	62370688	62370688	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcggctctcatagcgattCttcagctgcttgcagcctcc	8	15	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62370688	62370688	C	A	SNP	EML3	ENST00000394776	human	ensembl	69_37n	-1	novel	nonsense	c.2272	p.E758*	1.000	pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EML3	HGNC	ENSG00000149499	86	0	0	39	17	30.36	-	-	-	A	62370688	C	A	62370688	4	1	275	1	0	0	0	0	0	1	0	0	5135	912	32	2	413	2	EML3	11	62370688	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73503	62370688	72635828	3191	28878										
ZBTB3	0	genome.wustl.edu	37	chr11	62521520	62521520	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctctacgccccacttcgaGaactccctaagcatctccct	5	19	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	62521520	62521520	G	T	SNP	ZBTB3	ENST00000394807	human	ensembl	69_37n	-1	known	missense	c.15	p.F5L	0.011	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	116	0	0	127	24	15.89	-	-	-	T	62521520	G	T	62521520	3	4	275	1	0	0	0	0	1	0	0	0	17630	933	33	2	1717	2	ZBTB3	11	62521520	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	150832	62521520	72484996	3192	28879										
ATL3	0	genome.wustl.edu	37	chr11	63410931	63410931	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatgagtgaatgtgatttcGaacattctgaatttcttcat	7	6	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	63410931	63410931	G	A	SNP	ATL3	ENST00000332645	human	ensembl	69_37n	-1	known	nonsense	c.829	p.R277*	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL3	HGNC	ENSG00000184743	132	0	0	92	12	11.54	-	-	-	A	63410931	G	A	63410931	4	1	275	1	0	0	0	0	0	1	0	0	1112	1066	37	1	901	1	ATL3	11	63410931	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	889411	63410931	71595585	3193	28880										
NAA40	0	genome.wustl.edu	37	chr11	63720082	63720082	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggggagagagaccctggcGatgttccaggcactccagcc	14	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	63720082	63720082	G	A	SNP	NAA40	ENST00000536939	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NAA40	HGNC	ENSG00000110583	179	0	0	84	94	52.51	-	-	-	A	63720082	G	A	63720082	1	1	275	0	1	0	0	0	0	0	0	0	10197	1073	37	1		1	NAA40	11	63720082	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	309151	63720082	71286434	3194	28881										
PLCB3	0	genome.wustl.edu	37	chr11	64029069	64029069	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagagaggaacaaatgcttCgagatgtcgtcctttgtgga	12	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	64029069	64029069	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	69_37n	1	known	silent	c.1845	p.F615	0.846	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCB3	HGNC	ENSG00000149782	72	0	0	115	16	12.12	-	-	-	T	64029069	C	T	64029069	2	4	275	1	0	0	0	0	0	0	0	1	12103	883	31	1		1	PLCB3	11	64029069	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	308987	64029069	70977447	3195	28882										
RPS6KA4	0	genome.wustl.edu	37	chr11	64132805	64132805	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggctctggctgccaggaaGattccagccccattccggcc	12	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	64132805	64132805	G	T	SNP	RPS6KA4	ENST00000334205	human	ensembl	69_37n	1	known	missense	c.939	p.K313N	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302	41	0	0	12	9	42.86	-	-	-	T	64132805	G	T	64132805	3	4	275	1	0	0	0	0	1	0	0	0	13739	933	33	2	973	2	RPS6KA4	11	64132805	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	103736	64132805	70873711	3196	28883										
NRXN2	0	genome.wustl.edu	37	chr11	64460322	64460322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacttcaaaccataccttCgctgtttaacgtcaggtgag	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	64460322	64460322	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.775	p.E259K	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	1155	0	0	816	117	12.53	-	-	-	T	64460322	C	T	64460322	3	4	275	1	0	0	0	0	1	0	0	0	10739	893	31	1	4712	1	NRXN2	11	64460322	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	327517	64460322	70546194	3197	28884										
EHD1	0	genome.wustl.edu	37	chr11	64621907	64621907	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaggtggttggccagcgcGaactcctcgtcgtccagcag	14	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	64621907	64621907	G	A	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.1503	p.F501	0.976	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	56	0	0	27	6	18.18	-	-	-	A	64621907	G	A	64621907	2	1	275	1	0	0	0	0	0	0	0	1	5012	1049	37	1		1	EHD1	11	64621907	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161585	64621907	70384609	3198	28885										
POLA2	0	genome.wustl.edu	37	chr11	65034164	65034164	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctcagagatcctgaactCttttgagcatgaggtaagaa	9	8	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65034164	65034164	C	A	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	missense	c.191	p.S64Y	0.432	pfam_Pol_alpha_B_N,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	105	0	0	105	16	13.22	-	-	-	A	65034164	C	A	65034164	3	1	275	1	0	0	0	0	1	0	0	0	12262	913	32	2	197	2	POLA2	11	65034164	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	412257	65034164	69972352	3199	28886										
TIGD3	0	genome.wustl.edu	37	chr11	65124653	65124653	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgagctattcgaaaaattCtacgactgtgaggaggaggt	12	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65124653	65124653	C	A	SNP	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	missense	c.1374	p.F458L	1.000	NULL	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	41	0	0	21	4	16	-	-	-	A	65124653	C	A	65124653	3	1	275	1	0	0	0	0	1	0	0	0	15992	912	32	2	1376	2	TIGD3	11	65124653	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90489	65124653	69881863	3200	28887										
PCNXL3	0	genome.wustl.edu	37	chr11	65403971	65403971	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcagtggcctccccctcgGctccctggaccaccccctgc	9	22	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65403971	65403971	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	silent	c.5703	p.R1901	0.997	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	20	0	0	7	3	30	-	-	-	A	65403971	G	A	65403971	2	1	275	1	0	0	0	0	0	0	0	1	11666	1190	42	4		4	PCNXL3	11	65403971	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	279318	65403971	69602545	3201	28888										
OVOL1	0	genome.wustl.edu	37	chr11	65562749	65562749	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctgcgcaagacctccaaGaaggtggccgtggcactaca	12	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65562749	65562749	G	A	SNP	OVOL1	ENST00000335987	human	ensembl	69_37n	1	known	silent	c.741	p.K247	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL1	HGNC	ENSG00000172818	31	0	0	12	10	45.45	-	-	-	A	65562749	G	A	65562749	2	1	275	1	0	0	0	0	0	0	0	1	11399	933	33	2		2	OVOL1	11	65562749	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158778	65562749	69443767	3202	28889										
SNX32	0	genome.wustl.edu	37	chr11	65617942	65617942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagacagttgcgatgcacGaagtctttctgcagcgcctg	12	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65617942	65617942	G	A	SNP	SNX32	ENST00000308342	human	ensembl	69_37n	1	known	missense	c.415	p.E139K	1.000	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803	184	0	0	94	17	15.32	-	-	-	A	65617942	G	A	65617942	3	1	275	1	0	0	0	0	1	0	0	0	14991	1059	37	1	433	1	SNX32	11	65617942	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	55193	65617942	69388574	3203	28890										
SNX32	0	genome.wustl.edu	37	chr11	65620232	65620232	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctgtgctgccaacgcttCgagcgcctctccgactccgc	10	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65620232	65620232	C	T	SNP	SNX32	ENST00000308342	human	ensembl	69_37n	1	known	silent	c.1044	p.F348	0.986	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803	49	0	0	30	17	36.17	-	-	-	T	65620232	C	T	65620232	2	4	275	1	0	0	0	0	0	0	0	1	14991	883	31	1		1	SNX32	11	65620232	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2290	65620232	69386284	3204	28891										
FIBP	0	genome.wustl.edu	37	chr11	65655169	65655169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcttgcccagcacctcccGaacaaaggcctcatcaaagg	7	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65655169	65655169	G	A	SNP	FIBP	ENST00000338369	human	ensembl	69_37n	-1	known	missense	c.313	p.R105W	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500	221	0	0	105	39	26.9	-	-	-	A	65655169	G	A	65655169	3	1	275	1	0	0	0	0	1	0	0	0	5932	1057	37	1	813	1	FIBP	11	65655169	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34937	65655169	69351347	3205	28892										
CATSPER1	0	genome.wustl.edu	37	chr11	65784558	65784558	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggtgtccacaatctcatcGatgacggctgcctgggagcg	14	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65784558	65784558	G	A	SNP	CATSPER1	ENST00000312106	human	ensembl	69_37n	-1	known	silent	c.2289	p.I763	0.001	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	56	0	0	23	14	37.84	-	-	-	A	65784558	G	A	65784558	2	1	275	1	0	0	0	0	0	0	0	1	2712	1048	37	1		1	CATSPER1	11	65784558	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	129389	65784558	69221958	3206	28893										
GAL3ST3	0	genome.wustl.edu	37	chr11	65812790	65812790	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcgccccctggtggatgaGaaggcttacggtgctgcacc	14	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	65812790	65812790	G	T	SNP	GAL3ST3	ENST00000312006	human	ensembl	69_37n	-1	known	missense	c.97	p.L33I	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229	31	0	0	13	4	23.53	-	-	-	T	65812790	G	T	65812790	3	4	275	1	0	0	0	0	1	0	0	0	6249	942	33	2	1206	2	GAL3ST3	11	65812790	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28232	65812790	69193726	3207	28894										
YIF1A	0	genome.wustl.edu	37	chr11	66053018	66053018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggggagaacctgcgccaaaGcaggggtggctcagagccag	17	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66053018	66053018	G	A	SNP	YIF1A	ENST00000431556	human	ensembl	69_37n	-1	novel	missense	c.511	p.L171F	0.004	pfam_Hrf1	pfam_Hrf1	-	no_stop_codon	YIF1A	HGNC	ENSG00000174851	10	0	0	6	8	57.14	-	-	-	A	66053018	G	A	66053018	3	1	275	1	0	0	0	0	1	0	0	0	17572	986	34	4		4	YIF1A	11	66053018	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	240228	66053018	68953498	3208	28895										
ACTN3	0	genome.wustl.edu	37	chr11	66318769	66318769	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcacccagatcgagaacatCgaggaagatttccgcaatgg	12	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66318769	66318769	C	T	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	silent	c.336	p.I112	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	137	0	0	80	20	20	-	-	-	T	66318769	C	T	66318769	2	4	275	1	0	0	0	0	0	0	0	1	206	874	31	1		1	ACTN3	11	66318769	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	265751	66318769	68687747	3209	28896										
ACTN3	0	genome.wustl.edu	37	chr11	66328139	66328139	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccagggtgagatccagaaGatctgccagacgtatgggct	13	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66328139	66328139	G	T	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	missense	c.1902	p.K634N	1.000	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	60	0	0	17	4	19.05	-	-	-	T	66328139	G	T	66328139	3	4	275	1	0	0	0	0	1	0	0	0	206	933	33	2	1831	2	ACTN3	11	66328139	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9370	66328139	68678377	3210	28897										
SPTBN2	0	genome.wustl.edu	37	chr11	66481105	66481105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catagctctggccccaccttCgggatccagcagcttggtaa	10	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66481105	66481105	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.769	p.E257K	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	66	0	0	47	13	21.67	-	-	-	T	66481105	C	T	66481105	3	4	275	1	0	0	0	0	1	0	0	0	15211	893	31	1	6527	1	SPTBN2	11	66481105	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	152966	66481105	68525411	3211	28898										
PC	0	genome.wustl.edu	37	chr11	66620845	66620845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcacattctgcaggaaggCgatgttggtctgcaggacag	15	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66620845	66620845	C	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.1378	p.A460T	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	80	0	0	42	7	14.29	-	-	-	T	66620845	C	T	66620845	3	4	275	1	0	0	0	0	1	0	0	0	11570	768	27	1	2202	1	PC	11	66620845	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	139740	66620845	68385671	3212	28899										
KDM2A	0	genome.wustl.edu	37	chr11	66947566	66947566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagcgtggtaccatgcgacGacgctatgaagatgatggca	13	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	66947566	66947566	G	A	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.59	p.R20Q	0.610	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	196	0	0	148	17	10.3	-	-	-	A	66947566	G	A	66947566	3	1	275	1	0	0	0	0	1	0	0	0	8178	1058	37	1	65	1	KDM2A	11	66947566	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	326721	66947566	68058950	3213	28900										
UNC93B1	0	genome.wustl.edu	37	chr11	67766694	67766694	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaggagatagggcgcgtgGgagccccgcggaggccgctg	19	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	67766694	67766694	G	T	SNP	UNC93B1	ENST00000227471	human	ensembl	69_37n	-1	known	silent	c.636	p.S212	1.000	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	31	0	0	29	6	17.14	-	-	-	T	67766694	G	T	67766694	2	4	275	1	0	0	0	0	0	0	0	1	17094	1219	43	4		4	UNC93B1	11	67766694	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	819128	67766694	67239822	3214	28901										
SUV420H1	0	genome.wustl.edu	37	chr11	67925652	67925652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgctatcatgacgcctacGaagagtcaatttgggaatcc	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	67925652	67925652	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.2161	p.R721C	0.998	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	237	1	0.42	206	24	10.43	-	-	-	A	67925652	G	A	67925652	3	1	275	1	0	0	0	0	1	0	0	0	15505	1058	37	1	500	1	SUV420H1	11	67925652	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158958	67925652	67080864	3215	28902										
ANO1	0	genome.wustl.edu	37	chr11	70034017	70034017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaggagcggcagaaggaCgagccgccgtgcaaccacca	15	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	70034017	70034017	C	T	SNP	ANO1	ENST00000355303	human	ensembl	69_37n	1	known	silent	c.2868	p.D956	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620	54	0	0	31	5	13.89	-	-	-	T	70034017	C	T	70034017	2	4	275	1	0	0	0	0	0	0	0	1	694	535	19	1		1	ANO1	11	70034017	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2108365	70034017	64972499	3216	28903										
SHANK2	0	genome.wustl.edu	37	chr11	70803521	70803521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagcacacagtggcgtgttCgtgcaggagaagctcgcagc	15	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	70803521	70803521	C	T	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.859	p.E287K	0.779	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	216	0	0	172	21	10.82	-	-	-	T	70803521	C	T	70803521	3	4	275	1	0	0	0	0	1	0	0	0	14354	893	31	1	4656	1	SHANK2	11	70803521	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	769504	70803521	64202995	3217	28904										
KRTAP5-7	0	genome.wustl.edu	37	chr11	71238594	71238594	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtggctcttgtgggggttCtaaggggggctgtggttctt	18	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	71238594	71238594	C	A	SNP	KRTAP5-7	ENST00000398536	human	ensembl	69_37n	1	known	missense	c.248	p.S83Y	0.832	NULL	NULL	-	no_errors	KRTAP5-7	HGNC	ENSG00000244411	245	0	0	122	28	18.67	-	-	-	A	71238594	C	A	71238594	3	1	275	1	0	0	0	0	1	0	0	0	8620	913	32	2	250	2	KRTAP5-7	11	71238594	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	435073	71238594	63767922	3218	28905										
DEFB108B	0	genome.wustl.edu	37	chr11	71544297	71544297	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttctttatgagccaagttCtaccaggtaacaaaataaac	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	71544297	71544297	C	A	SNP	DEFB108B	ENST00000328698	human	ensembl	69_37n	1	known	missense	c.52	p.L18I	0.677	NULL	NULL	-	no_errors	DEFB108B	HGNC	ENSG00000184276	91	0	0	62	9	12.68	-	-	-	A	71544297	C	A	71544297	3	1	275	1	0	0	0	0	1	0	0	0	4434	912	32	2	54	2	DEFB108B	11	71544297	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	305703	71544297	63462219	3219	28906										
NUMA1	0	genome.wustl.edu	37	chr11	71725932	71725932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcatggagctcagctagttCgttctgctgccggcttatct	12	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	71725932	71725932	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.2617	p.E873K	0.023	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	58	0	0	34	13	27.66	-	-	-	T	71725932	C	T	71725932	3	4	275	1	0	0	0	0	1	0	0	0	10823	893	31	1	3782	1	NUMA1	11	71725932	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	181635	71725932	63280584	3220	28907										
RAB6A	0	genome.wustl.edu	37	chr11	73390725	73390725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgcttctgtcctgtgtgCtttccattcccggcaaagct	8	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	73390725	73390725	C	T	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.536	p.S179N	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	405	1	0.25	372	49	11.61	-	-	-	T	73390725	C	T	73390725	3	4	275	1	0	0	0	0	1	0	0	0	13034	797	28	4	98	4	RAB6A	11	73390725	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1664793	73390725	61615791	3221	28908										
MRPL48	0	genome.wustl.edu	37	chr11	73555979	73555979	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagagttatgcccagtatgTtcacaacctctgcaactctc	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	73555979	73555979	T	C	SNP	MRPL48	ENST00000310614	human	ensembl	69_37n	1	known	missense	c.329	p.V110A	1.000	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	-	no_errors	MRPL48	HGNC	ENSG00000175581	340	0	0	277	90	24.52	-	-	-	C	73555979	T	C	73555979	3	2	275	1	0	0	0	0	1	0	0	0	9884	1725	60	5	347	5	MRPL48	11	73555979	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	165254	73555979	61450537	3222	28909										
CHRDL2	0	genome.wustl.edu	37	chr11	74412541	74412541	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaacagctccactttcttCgtccattcctcctacgacag	5	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	74412541	74412541	C	T	SNP	CHRDL2	ENST00000534159	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	CHRDL2	HGNC	ENSG00000054938	209	0	0	168	22	11.52	-	-	-	T	74412541	C	T	74412541	1	4	275	0	1	0	0	0	0	0	0	0	3403	899	31	1		1	CHRDL2	11	74412541	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	856562	74412541	60593975	3223	28910										
SPCS2	0	genome.wustl.edu	37	chr11	74660424	74660424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcgggacaggaagtggcCgtagcggcttgttggataag	17	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	74660424	74660424	C	T	SNP	SPCS2	ENST00000263672	human	ensembl	69_37n	1	known	missense	c.94	p.R32C	1.000	NULL	pfam_SigPept_cplx_su2	-	no_errors	SPCS2	HGNC	ENSG00000118363	972	0	0	563	102	15.27	-	-	-	T	74660424	C	T	74660424	3	4	275	1	0	0	0	0	1	0	0	0	15115	652	23	1	96	1	SPCS2	11	74660424	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	247883	74660424	60346092	3224	28911										
MAP6	0	genome.wustl.edu	37	chr11	75298536	75298536	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaccactaaaccttgattCtttacaggctcagagaccat	7	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	75298536	75298536	C	A	SNP	MAP6	ENST00000304771	human	ensembl	69_37n	-1	known	missense	c.2010	p.K670N	0.019	NULL	pfam_STOP/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533	299	1	0.33	148	55	27.09	-	-	-	A	75298536	C	A	75298536	3	1	275	1	0	0	0	0	1	0	0	0	9335	912	32	2	435	2	MAP6	11	75298536	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	638112	75298536	59707980	3225	28912										
MYO7A	0	genome.wustl.edu	37	chr11	76918339	76918339	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgcccctcccaggccttCgaagtggagtccagcaccaa	9	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	76918339	76918339	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	silent	c.5748	p.F1916	0.999	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	70	0	0	33	12	26.67	-	-	-	T	76918339	C	T	76918339	2	4	275	1	0	0	0	0	0	0	0	1	10154	883	31	1		1	MYO7A	11	76918339	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1619803	76918339	58088177	3226	28913										
INTS4	0	genome.wustl.edu	37	chr11	77602876	77602876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcaagtggggcaaatcagCgatgaaatacctggaggaac	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	77602876	77602876	C	T	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	missense	c.2299	p.A767T	0.044	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	119	0	0	115	19	14.18	-	-	-	T	77602876	C	T	77602876	3	4	275	1	0	0	0	0	1	0	0	0	7834	768	27	1	608	1	INTS4	11	77602876	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	684537	77602876	57403640	3227	28914										
INTS4	0	genome.wustl.edu	37	chr11	77672097	77672097	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcagctaggccttctgcatCttttgtgacacttttctcca	8	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	77672097	77672097	C	A	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	missense	c.559	p.D187Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	177	0	0	150	20	11.76	-	-	-	A	77672097	C	A	77672097	3	1	275	1	0	0	0	0	1	0	0	0	7834	913	32	2	2408	2	INTS4	11	77672097	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69221	77672097	57334419	3228	28915										
KCTD14	0	genome.wustl.edu	37	chr11	77727731	77727731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacttggagaataccttgtAcccctgggccttaatgtcca	9	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	77727731	77727731	A	G	SNP	KCTD14	ENST00000353172	human	ensembl	69_37n	-1	known	missense	c.676	p.Y226H	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364	192	0	0	174	26	12.94	-	-	-	G	77727731	A	G	77727731	3	3	275	1	0	0	0	0	1	0	0	0	8155	391	14	5	95	5	KCTD14	11	77727731	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	55634	77727731	57278785	3229	28916										
ODZ4	0	genome.wustl.edu	37	chr11	78567023	78567023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttacctgtgtatgtgaagGagggaggccttttctgccat	14	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	78567023	78567023	G	A	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.1456	p.P486S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	118	0	0	110	23	17.29	-	-	-	A	78567023	G	A	78567023	3	1	275	1	0	0	0	0	1	0	0	0	10910	1174	41	2	6949	2	ODZ4	11	78567023	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	839292	78567023	56439493	3230	28917										
PCF11	0	genome.wustl.edu	37	chr11	82879521	82879521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatcgttttccacttaagcGacctcgatatgaagattcag	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	82879521	82879521	G	A	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	missense	c.2144	p.R715Q	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	56	0	0	50	6	10.71	-	-	-	A	82879521	G	A	82879521	3	1	275	1	0	0	0	0	1	0	0	0	11646	1058	37	1	2174	1	PCF11	11	82879521	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4312498	82879521	52126995	3231	28918										
CCDC90B	0	genome.wustl.edu	37	chr11	82984702	82984702	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactttaccttttttgtaaaTtctgtagttgtttccataag	5	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	82984702	82984702	T	A	SNP	CCDC90B	ENST00000529689	human	ensembl	69_37n	-1	known	missense	c.582	p.E194D	1.000	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500	460	0	0	249	101	28.86	-	-	-	A	82984702	T	A	82984702	3	1	275	1	0	0	0	0	1	0	0	0	2896	1490	52	5	194	5	CCDC90B	11	82984702	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	105181	82984702	52021814	3232	28919										
TMEM126B	0	genome.wustl.edu	37	chr11	85345190	85345190	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctggtttctctggaatattCtcaaacttcctgttcagacg	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	85345190	85345190	C	A	SNP	TMEM126B	ENST00000358867	human	ensembl	69_37n	1	known	missense	c.264	p.F88L	0.066	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126B	HGNC	ENSG00000171204	279	0	0	229	36	13.58	-	-	-	A	85345190	C	A	85345190	3	1	275	1	0	0	0	0	1	0	0	0	16134	912	32	2	180	2	TMEM126B	11	85345190	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2360488	85345190	49661326	3233	28920										
SYTL2	0	genome.wustl.edu	37	chr11	85435163	85435163	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttctttttcttcctctttCtcttgtttcatatatggcga	4	11	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	85435163	85435163	C	A	SNP	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	missense	c.3909	p.E1303D	0.093	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	188	0	0	133	22	14.19	-	-	-	A	85435163	C	A	85435163	3	1	275	1	0	0	0	0	1	0	0	0	15575	912	32	2	1533	2	SYTL2	11	85435163	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	89973	85435163	49571353	3234	28921										
CCDC83	0	genome.wustl.edu	37	chr11	85576225	85576225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacgggccaccaaaagaaaTtaaactgcctaccagtgaag	9	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	85576225	85576225	T	G	SNP	CCDC83	ENST00000280245	human	ensembl	69_37n	1	known	missense	c.59	p.I20S	0.000	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676	240	0	0	149	26	14.86	-	-	-	G	85576225	T	G	85576225	3	3	275	1	0	0	0	0	1	0	0	0	2884	1493	52	5	61	5	CCDC83	11	85576225	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	141062	85576225	49430291	3235	28922										
CCDC83	0	genome.wustl.edu	37	chr11	85627278	85627278	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatgagaaggatttcaaggTaagattcataacaacacaac	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	85627278	85627278	T	C	SNP	CCDC83	ENST00000280245	human	ensembl	69_37n	1	known	splice_site	c.1173+2	e10+2	0.999	-	-	-	no_errors	CCDC83	HGNC	ENSG00000150676	91	0	0	75	13	14.77	-	-	-	C	85627278	T	C	85627278	5	2	275	1	0	0	0	0	0	0	1	0	2884	1652	57	5	1213	5	CCDC83	11	85627278	Splice_Site	SNP	T	TCGA-AN-A046-01A-21W-A050-09	51053	85627278	49379238	3236	28923										
EED	0	genome.wustl.edu	37	chr11	85988119	85988119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgtgactattcttgggcGatttgattacagccagtgtg	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	85988119	85988119	G	A	SNP	EED	ENST00000263360	human	ensembl	69_37n	1	known	missense	c.1064	p.R355Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	383	0	0	256	43	14.38	-	-	-	A	85988119	G	A	85988119	3	1	275	1	0	0	0	0	1	0	0	0	4957	1058	37	1	1102	1	EED	11	85988119	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	360841	85988119	49018397	3237	28924										
CCDC81	0	genome.wustl.edu	37	chr11	86120354	86120354	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaatgctgcctataatCttggagttgctgaagctata	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	86120354	86120354	C	A	SNP	CCDC81	ENST00000445632	human	ensembl	69_37n	1	known	missense	c.1165	p.L389I	1.000	NULL	superfamily_IHF-like_DNA-bd	-	no_errors	CCDC81	HGNC	ENSG00000149201	272	0	0	163	67	29.13	-	-	-	A	86120354	C	A	86120354	3	1	275	1	0	0	0	0	1	0	0	0	2882	913	32	2	1203	2	CCDC81	11	86120354	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	132235	86120354	48886162	3238	28925										
ME3	0	genome.wustl.edu	37	chr11	86161370	86161370	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaccttggaaaacaaacacGtgattggaaagcttgttctt	9	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	86161370	86161370	G	T	SNP	ME3	ENST00000359636	human	ensembl	69_37n	-1	known	missense	c.990	p.H330Q	0.602	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376	230	0	0	173	23	11.68	-	-	-	T	86161370	G	T	86161370	3	4	275	1	0	0	0	0	1	0	0	0	9490	1136	40	3	852	3	ME3	11	86161370	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41016	86161370	48845146	3239	28926										
GRM5	0	genome.wustl.edu	37	chr11	88338063	88338063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggagcccataggccatcGaatagatggcgttgatcaca	12	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	88338063	88338063	G	A	SNP	GRM5	ENST00000305447	human	ensembl	69_37n	-1	known	missense	c.1217	p.S406L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1	-	no_errors	GRM5	HGNC	ENSG00000168959	141	1	0.7	110	73	39.89	-	-	-	A	88338063	G	A	88338063	3	1	275	1	0	0	0	0	1	0	0	0	6851	1059	37	1	2445	1	GRM5	11	88338063	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2176693	88338063	46668453	3240	28927										
FOLH1B	0	genome.wustl.edu	37	chr11	89424219	89424219	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgctcccttttgattgtcGagattatgctgtagttttaa	9	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	89424219	89424219	G	A	SNP	FOLH1B	ENST00000525540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.592	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	397	0	0	246	138	35.94	-	-	-	A	89424219	G	A	89424219	1	1	275	0	1	0	0	0	0	0	0	0	6026	1058	37	1		1	FOLH1B	11	89424219	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1086156	89424219	45582297	3241	28928										
FAT3	0	genome.wustl.edu	37	chr11	92592427	92592427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaactagctctgcgtcttcGaacactgcaaagcaatggga	9	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	92592427	92592427	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.11597	p.R3866Q	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	249	0	0	139	20	12.58	-	-	-	A	92592427	G	A	92592427	3	1	275	1	0	0	0	0	1	0	0	0	5737	1058	37	1	11675	1	FAT3	11	92592427	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3168208	92592427	42414089	3242	28929										
FAT3	0	genome.wustl.edu	37	chr11	92600122	92600122	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgagagtagcatctacttCggcgccctggtgcaagcgga	13	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	92600122	92600122	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.11874	p.F3958	0.985	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	40	0	0	19	5	20.83	-	-	-	T	92600122	C	T	92600122	2	4	275	1	0	0	0	0	0	0	0	1	5737	883	31	1		1	FAT3	11	92600122	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7695	92600122	42406394	3243	28930										
SLC36A4	0	genome.wustl.edu	37	chr11	92899173	92899173	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattggaaggttgtggggatCtggcatgttctaaagaaagg	15	3	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	92899173	92899173	C	A	SNP	SLC36A4	ENST00000326402	human	ensembl	69_37n	-1	known	missense	c.778	p.D260Y	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A4	HGNC	ENSG00000180773	322	0	0	163	74	31.22	-	-	-	A	92899173	C	A	92899173	3	1	275	1	0	0	0	0	1	0	0	0	14685	913	32	2	752	2	SLC36A4	11	92899173	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	299051	92899173	42107343	3244	28931										
HEPHL1	0	genome.wustl.edu	37	chr11	93803679	93803679	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaaggctataacaaattCagtggtcttcctctaaacgc	6	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	93803679	93803679	C	A	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	missense	c.1203	p.F401L	0.999	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	152	0	0	111	25	18.38	-	-	-	A	93803679	C	A	93803679	3	1	275	1	0	0	0	0	1	0	0	0	7106	825	29	2	1225	2	HEPHL1	11	93803679	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	904506	93803679	41202837	3245	28932										
HEPHL1	0	genome.wustl.edu	37	chr11	93826752	93826752	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagggaatatacggatggaGaatttgtggagatcaaagcc	13	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	93826752	93826752	G	T	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	nonsense	c.2380	p.E794*	0.996	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	421	0	0	244	45	15.52	-	-	-	T	93826752	G	T	93826752	4	4	275	1	0	0	0	0	0	1	0	0	7106	943	33	2	2430	2	HEPHL1	11	93826752	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23073	93826752	41179764	3246	28933										
SESN3	0	genome.wustl.edu	37	chr11	94922994	94922994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgatgtgctagcagcttattAatttcattaagatttttcag	7	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	94922994	94922994	A	C	SNP	SESN3	ENST00000536441	human	ensembl	69_37n	-1	known	missense	c.474	p.I158M	0.999	pfam_PA26	pfam_PA26	-	no_errors	SESN3	HGNC	ENSG00000149212	337	0	0	188	23	10.9	-	-	-	C	94922994	A	C	94922994	3	2	275	1	0	0	0	0	1	0	0	0	14214	358	13	5	1032	5	SESN3	11	94922994	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1096242	94922994	40083522	3247	28934										
MAML2	0	genome.wustl.edu	37	chr11	95825557	95825557	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacggggctccatggctggGtgcgggttgttaataaaact	15	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	95825557	95825557	G	A	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1638	p.H546	0.712	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	207	0	0	115	36	23.84	-	-	-	A	95825557	G	A	95825557	2	1	275	1	0	0	0	0	0	0	0	1	9277	1252	44	4		4	MAML2	11	95825557	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	902563	95825557	39180959	3248	28935										
PGR	0	genome.wustl.edu	37	chr11	100909908	100909908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatcttgggtaattgtgcaGcaataacttcagacatcatt	7	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	100909908	100909908	G	A	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.2741	p.A914V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	391	0	0	156	53	25.36	-	-	-	A	100909908	G	A	100909908	3	1	275	1	0	0	0	0	1	0	0	0	11879	971	34	4	64	4	PGR	11	100909908	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5084351	100909908	34096608	3249	28936										
TRPC6	0	genome.wustl.edu	37	chr11	101362450	101362450	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagtctttgcactgcattGacagttttttgtagtcattc	7	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101362450	101362450	G	A	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.965	p.S322L	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	102	0	0	65	20	23.53	-	-	-	A	101362450	G	A	101362450	3	1	275	1	0	0	0	0	1	0	0	0	16679	1294	45	2	1874	2	TRPC6	11	101362450	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	452542	101362450	33644066	3250	28937										
ANGPTL5	0	genome.wustl.edu	37	chr11	101765736	101765736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagccacatacagcataaAactggtatttttctgattta	5	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101765736	101765736	A	C	SNP	ANGPTL5	ENST00000334289	human	ensembl	69_37n	-1	known	missense	c.721	p.F241V	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL5	HGNC	ENSG00000187151	203	0	0	108	34	23.94	-	-	-	C	101765736	A	C	101765736	3	2	275	1	0	0	0	0	1	0	0	0	617	14	1	5	453	5	ANGPTL5	11	101765736	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	403286	101765736	33240780	3251	28938										
KIAA1377	0	genome.wustl.edu	37	chr11	101832651	101832651	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatcaactaatctcagctgCtttgatgaagataaactggc	7	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101832651	101832651	C	T	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	silent	c.885	p.C295	0.528	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	114	0	0	106	17	13.71	-	-	-	T	101832651	C	T	101832651	2	4	275	1	0	0	0	0	0	0	0	1	8279	805	28	4		4	KIAA1377	11	101832651	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	66915	101832651	33173865	3252	28939										
KIAA1377	0	genome.wustl.edu	37	chr11	101833080	101833080	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctacatttccagaccaagaGaaatattctgaattaaatca	5	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101833080	101833080	G	T	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.1314	p.E438D	0.063	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	120	0	0	72	11	13.25	-	-	-	T	101833080	G	T	101833080	3	4	275	1	0	0	0	0	1	0	0	0	8279	933	33	2	1336	2	KIAA1377	11	101833080	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	429	101833080	33173436	3253	28940										
KIAA1377	0	genome.wustl.edu	37	chr11	101833321	101833321	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaagagttgcctttatttTcagacagttttcaagatgcc	9	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101833321	101833321	T	C	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.1555	p.S519P	0.997	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	90	0	0	71	11	13.41	-	-	-	C	101833321	T	C	101833321	3	2	275	1	0	0	0	0	1	0	0	0	8279	1783	62	5	1577	5	KIAA1377	11	101833321	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	241	101833321	33173195	3254	28941										
KIAA1377	0	genome.wustl.edu	37	chr11	101833844	101833844	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagaagtccagggaggattCtatctctgaaaatgttacga	10	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101833844	101833844	C	A	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.2078	p.S693Y	0.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	104	0	0	85	19	18.27	-	-	-	A	101833844	C	A	101833844	3	1	275	1	0	0	0	0	1	0	0	0	8279	913	32	2	2100	2	KIAA1377	11	101833844	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	523	101833844	33172672	3255	28942										
KIAA1377	0	genome.wustl.edu	37	chr11	101834361	101834361	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctccactctcaaatgcttgTtctgacctagtcactgtgat	6	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101834361	101834361	T	G	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.2595	p.C865W	0.059	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	267	0	0	152	46	23.23	-	-	-	G	101834361	T	G	101834361	3	3	275	1	0	0	0	0	1	0	0	0	8279	1731	60	5	2617	5	KIAA1377	11	101834361	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	517	101834361	33172155	3256	28943										
KIAA1377	0	genome.wustl.edu	37	chr11	101863530	101863530	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatacaagaatccatttgcaAaaacccatccatcaaaaata	2	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101863530	101863530	A	T	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.3266	p.K1089I	1.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	144	0	0	140	23	14.11	-	-	-	T	101863530	A	T	101863530	3	4	275	1	0	0	0	0	1	0	0	0	8279	14	1	5	3304	5	KIAA1377	11	101863530	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	29169	101863530	33142986	3257	28944										
C11orf70	0	genome.wustl.edu	37	chr11	101952056	101952056	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaaagaatttaattacttTttattaatagagttgttaca	4	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	101952056	101952056	T	G	SNP	C11orf70	ENST00000526781	human	ensembl	69_37n	1	putative	missense	c.719	p.F240C	0.000	NULL	NULL	-	no_errors	C11orf70	HGNC	ENSG00000137691	150	0	0	94	19	16.81	-	-	-	G	101952056	T	G	101952056	3	3	275	1	0	0	0	0	1	0	0	0	1670	1856	64	5		5	C11orf70	11	101952056	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	88526	101952056	33054460	3258	28945										
BIRC2	0	genome.wustl.edu	37	chr11	102220963	102220963	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtctgggatccacctctaaGaatacgtctccaatgagaaa	8	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	102220963	102220963	G	T	SNP	BIRC2	ENST00000227758	human	ensembl	69_37n	1	known	missense	c.378	p.K126N	0.566	NULL	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330	139	0	0	55	9	13.85	-	-	-	T	102220963	G	T	102220963	3	4	275	1	0	0	0	0	1	0	0	0	1440	933	33	2	380	2	BIRC2	11	102220963	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	268907	102220963	32785553	3259	28946										
BIRC2	0	genome.wustl.edu	37	chr11	102239269	102239269	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaaaaacaagctgaagaAatggcatcaggtatttgggg	13	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	102239269	102239269	A	C	SNP	BIRC2	ENST00000227758	human	ensembl	69_37n	1	known	missense	c.1356	p.E452D	0.998	NULL	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330	508	0	0	380	125	24.75	-	-	-	C	102239269	A	C	102239269	3	2	275	1	0	0	0	0	1	0	0	0	1440	11	1	5	1374	5	BIRC2	11	102239269	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	18306	102239269	32767247	3260	28947										
MMP27	0	genome.wustl.edu	37	chr11	102575419	102575419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaatgcttgcatttcccGaattttgtcatctatgagac	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	102575419	102575419	G	A	SNP	MMP27	ENST00000260229	human	ensembl	69_37n	-1	known	missense	c.190	p.R64W	1.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP27	HGNC	ENSG00000137675	249	0	0	152	67	30.45	-	-	-	A	102575419	G	A	102575419	3	1	275	1	0	0	0	0	1	0	0	0	9736	1057	37	1	1387	1	MMP27	11	102575419	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336150	102575419	32431097	3261	28948										
MMP3	0	genome.wustl.edu	37	chr11	102709320	102709320	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaaagaaatatgttttgttCttttccttatcagaaatggc	6	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	102709320	102709320	C	A	SNP	MMP3	ENST00000299855	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	0.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP3	HGNC	ENSG00000149968	301	1	0.33	233	36	13.38	-	-	-	A	102709320	C	A	102709320	3	1	275	1	0	0	0	0	1	0	0	0	9738	912	32	2	254	2	MMP3	11	102709320	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	133901	102709320	32297196	3262	28949										
DYNC2H1	0	genome.wustl.edu	37	chr11	103048454	103048454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatcccaaagctatgcctcGatatcaattattaggccata	6	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	103048454	103048454	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.6044	p.R2015Q	0.986	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	266	1	0.37	191	30	13.57	-	-	-	A	103048454	G	A	103048454	3	1	275	1	0	0	0	0	1	0	0	0	4881	1058	37	1	6194	1	DYNC2H1	11	103048454	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	339134	103048454	31958062	3263	28950										
DDI1	0	genome.wustl.edu	37	chr11	103908260	103908260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatagaagaggcccccgagaGttttggacaagtgacgatgc	14	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	103908260	103908260	G	T	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	missense	c.710	p.S237I	1.000	pfam_Peptidase_aspartic_euk-pred,superfamily_Peptidase_aspartic	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	65	0	0	35	6	14.63	-	-	-	T	103908260	G	T	103908260	3	4	275	1	0	0	0	0	1	0	0	0	4359	1029	36	4	712	4	DDI1	11	103908260	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	859806	103908260	31098256	3264	28951										
DDI1	0	genome.wustl.edu	37	chr11	103908577	103908577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagacatcaatgttccatcGatttgaagaaaaatgtgctg	10	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	103908577	103908577	G	A	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	missense	c.1027	p.D343N	0.988	pfam_Peptidase_aspartic_euk-pred,pfam_RVP_2,superfamily_Peptidase_aspartic	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	99	0	0	62	17	21.52	-	-	-	A	103908577	G	A	103908577	3	1	275	1	0	0	0	0	1	0	0	0	4359	1058	37	1	1029	1	DDI1	11	103908577	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	317	103908577	31097939	3265	28952										
CASP5	0	genome.wustl.edu	37	chr11	104877880	104877880	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttgatgagccacgcgattCtttcgcaaagagtctaccaa	8	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	104877880	104877880	C	A	SNP	CASP5	ENST00000393141	human	ensembl	69_37n	-1	known	missense	c.402	p.K134N	0.001	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	597	0	0	435	78	15.18	-	-	-	A	104877880	C	A	104877880	3	1	275	1	0	0	0	0	1	0	0	0	2699	912	32	2	969	2	CASP5	11	104877880	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	969303	104877880	30128636	3266	28953										
CASP1	0	genome.wustl.edu	37	chr11	104903812	104903812	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaaggaagaaagtactcCttgagagtcttgcatattaa	10	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	104903812	104903812	C	A	SNP	CASP1	ENST00000436863	human	ensembl	69_37n	-1	known	nonsense	c.316	p.G106*	0.000	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752	353	0	0	227	37	14.02	-	-	-	A	104903812	C	A	104903812	4	1	275	1	0	0	0	0	0	1	0	0	2693	690	24	4	926	4	CASP1	11	104903812	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25932	104903812	30102704	3267	28954										
GRIA4	0	genome.wustl.edu	37	chr11	105804474	105804474	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatagcagtgtatgaaaaGatgtggacctacatgcgatc	10	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	105804474	105804474	G	T	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.2073	p.K691N	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	109	0	0	88	20	18.52	-	-	-	T	105804474	G	T	105804474	3	4	275	1	0	0	0	0	1	0	0	0	6821	933	33	2	2160	2	GRIA4	11	105804474	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	900662	105804474	29202042	3268	28955										
GUCY1A2	0	genome.wustl.edu	37	chr11	106558339	106558339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaccttttttattctcgacGaagaaagagaaggctttggt	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	106558339	106558339	G	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	missense	c.2228	p.S743L	1.000	superfamily_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	251	0	0	185	30	13.89	-	-	-	A	106558339	G	A	106558339	3	1	275	1	0	0	0	0	1	0	0	0	6944	1059	37	1	67	1	GUCY1A2	11	106558339	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	753865	106558339	28448177	3269	28956										
ALKBH8	0	genome.wustl.edu	37	chr11	107396214	107396214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctaaatgtaaatgatgttCgtagtcccctcttgcttaaa	6	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	107396214	107396214	C	T	SNP	ALKBH8	ENST00000417449	human	ensembl	69_37n	-1	known	missense	c.992	p.R331Q	0.994	NULL	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760	275	0	0	156	44	22	-	-	-	T	107396214	C	T	107396214	3	4	275	1	0	0	0	0	1	0	0	0	533	884	31	1	1027	1	ALKBH8	11	107396214	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	837875	107396214	27610302	3270	28957										
ALKBH8	0	genome.wustl.edu	37	chr11	107424591	107424591	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagttttgattgtctgtatCttctgtccaatcaacacttt	5	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	107424591	107424591	C	A	SNP	ALKBH8	ENST00000417449	human	ensembl	69_37n	-1	known	missense	c.490	p.D164Y	0.920	NULL	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760	177	0	0	101	30	22.9	-	-	-	A	107424591	C	A	107424591	3	1	275	1	0	0	0	0	1	0	0	0	533	913	32	2	1549	2	ALKBH8	11	107424591	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28377	107424591	27581925	3271	28958										
ELMOD1	0	genome.wustl.edu	37	chr11	107488834	107488834	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaatttcttcccacagttgAcacttactttgacaaaggca	5	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	107488834	107488834	A	G	SNP	ELMOD1	ENST00000524378	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ELMOD1	HGNC	ENSG00000110675	90	0	0	78	12	13.33	-	-	-	G	107488834	A	G	107488834	1	3	275	0	1	0	0	0	0	0	0	0	5105	290	10	5		5	ELMOD1	11	107488834	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	64243	107488834	27517682	3272	28959										
CUL5	0	genome.wustl.edu	37	chr11	107944202	107944202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttttcaagatgatccacGatttcttactgcaagagata	7	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	107944202	107944202	G	A	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	missense	c.1091	p.R364Q	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	70	0	0	61	12	16.44	-	-	-	A	107944202	G	A	107944202	3	1	275	1	0	0	0	0	1	0	0	0	4090	1058	37	1	1129	1	CUL5	11	107944202	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	455368	107944202	27062314	3273	28960										
CUL5	0	genome.wustl.edu	37	chr11	107965237	107965237	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaataataaattggcattAccaggtattattttataatt	4	3	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	107965237	107965237	A	G	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	silent	c.1563	p.L521	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	70	0	0	66	15	18.52	-	-	-	G	107965237	A	G	107965237	2	3	275	1	0	0	0	0	0	0	0	1	4090	388	14	5		5	CUL5	11	107965237	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	21035	107965237	27041279	3274	28961										
ATM	0	genome.wustl.edu	37	chr11	108117799	108117799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagtattcttcaggatttcGtaatattgccgtcaaagaaa	7	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	108117799	108117799	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.1010	p.R337H	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	146	0	0	91	30	24.79	-	-	-	A	108117799	G	A	108117799	3	1	275	1	0	0	0	0	1	0	0	0	1113	1145	40	1	1036	1	ATM	11	108117799	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	152562	108117799	26888717	3275	28962										
ATM	0	genome.wustl.edu	37	chr11	108200943	108200943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaattattctatgcaagatAcacagtaaaggttcagcgag	8	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	108200943	108200943	A	G	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.7310	p.Y2437C	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	375	0	0	253	46	15.38	-	-	-	G	108200943	A	G	108200943	3	3	275	1	0	0	0	0	1	0	0	0	1113	391	14	5	7504	5	ATM	11	108200943	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	83144	108200943	26805573	3276	28963										
EXPH5	0	genome.wustl.edu	37	chr11	108385508	108385508	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccactggaataaaagtgaccGaactgtgttcttgatccata	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	108385508	108385508	G	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	silent	c.726	p.F242	0.372	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	179	0	0	126	52	29.21	-	-	-	A	108385508	G	A	108385508	2	1	275	1	0	0	0	0	0	0	0	1	5359	1049	37	1		1	EXPH5	11	108385508	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184565	108385508	26621008	3277	28964										
DDX10	0	genome.wustl.edu	37	chr11	108546439	108546439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggatctggcaagactctgGcttttcttgttccagtaagt	10	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	108546439	108546439	G	A	SNP	DDX10	ENST00000322536	human	ensembl	69_37n	1	known	missense	c.364	p.A122T	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105	431	0	0	299	47	13.54	-	-	-	A	108546439	G	A	108546439	3	1	275	1	0	0	0	0	1	0	0	0	4373	1203	42	4	374	4	DDX10	11	108546439	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	160931	108546439	26460077	3278	28965										
ZC3H12C	0	genome.wustl.edu	37	chr11	110030200	110030200	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaacgattattaatgtattCatttgtcaatgacaagtaag	7	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	110030200	110030200	C	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	nonsense	c.1133	p.S378*	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	64	0	0	53	7	11.67	-	-	-	A	110030200	C	A	110030200	4	1	275	1	0	0	0	0	0	1	0	0	17659	838	29	2	1147	2	ZC3H12C	11	110030200	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1483761	110030200	24976316	3279	28966										
ZC3H12C	0	genome.wustl.edu	37	chr11	110036118	110036118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaaagaaagccttattccCgccaggaaggcctgggaagc	12	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	110036118	110036118	C	T	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	missense	c.2308	p.R770C	0.702	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	95	0	0	93	28	23.14	-	-	-	T	110036118	C	T	110036118	3	4	275	1	0	0	0	0	1	0	0	0	17659	652	23	1	2330	1	ZC3H12C	11	110036118	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5918	110036118	24970398	3280	28967										
ARHGAP20	0	genome.wustl.edu	37	chr11	110495028	110495028	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttttatcttaaagttatTgttatatctagaaagataaa	4	2	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	110495028	110495028	T	C	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.361	p.N121D	1.000	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	142	0	0	90	14	13.46	-	-	-	C	110495028	T	C	110495028	3	2	275	1	0	0	0	0	1	0	0	0	872	1812	63	5	3262	5	ARHGAP20	11	110495028	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	458910	110495028	24511488	3281	28968										
ALG9	0	genome.wustl.edu	37	chr11	111709046	111709046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctaatgccagccaattcGatgtcacagtatagtgctcc	7	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	111709046	111709046	G	A	SNP	ALG9	ENST00000531154	human	ensembl	69_37n	-1	known	missense	c.737	p.S246L	0.999	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG9	HGNC	ENSG00000086848	223	0	0	160	19	10.56	-	-	-	A	111709046	G	A	111709046	3	1	275	1	0	0	0	0	1	0	0	0	524	1059	37	1	626	1	ALG9	11	111709046	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1214018	111709046	23297470	3282	28969										
FDXACB1	0	genome.wustl.edu	37	chr11	111747364	111747364	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaggacttatcttgactcCtggcaaaatagacaccaata	7	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	111747364	111747364	C	A	SNP	FDXACB1	ENST00000260257	human	ensembl	69_37n	-1	known	splice_site	c.534-1	e4-1	1.000	-	-	-	no_errors	FDXACB1	HGNC	ENSG00000255561	83	0	0	57	23	28.75	-	-	-	A	111747364	C	A	111747364	5	1	275	1	0	0	0	0	0	0	1	0	5852	695	24	4	1349	4	FDXACB1	11	111747364	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	38318	111747364	23259152	3283	28970										
DIXDC1	0	genome.wustl.edu	37	chr11	111864311	111864311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgatgtcagttaccaccAggtcagaacatattcagcca	7	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	111864311	111864311	A	C	SNP	DIXDC1	ENST00000440460	human	ensembl	69_37n	1	known	missense	c.1361	p.Q454P	1.000	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764	107	0	0	87	13	13	-	-	-	C	111864311	A	C	111864311	3	2	275	1	0	0	0	0	1	0	0	0	4577	202	7	5	1440	5	DIXDC1	11	111864311	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	116947	111864311	23142205	3284	28971										
BCO2	0	genome.wustl.edu	37	chr11	112064204	112064204	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctgtttgaaggtacaatCattggtttgatgggatggcg	13	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	112064204	112064204	C	A	SNP	BCO2	ENST00000530677	human	ensembl	69_37n	1	novel	nonsense	c.8	p.S3*	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCO2	HGNC	ENSG00000197580	202	0	0	163	25	13.3	-	-	-	A	112064204	C	A	112064204	4	1	275	1	0	0	0	0	0	1	0	0	1389	826	29	2	311	2	BCO2	11	112064204	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	199893	112064204	22942312	3285	28972										
BCO2	0	genome.wustl.edu	37	chr11	112085592	112085592	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggcaaaaagtatcatttCttttatggctgtggctttcg	10	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	112085592	112085592	C	A	SNP	BCO2	ENST00000357685	human	ensembl	69_37n	1	known	missense	c.1440	p.F480L	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580	267	0	0	236	32	11.94	-	-	-	A	112085592	C	A	112085592	3	1	275	1	0	0	0	0	1	0	0	0	1389	912	32	2	1478	2	BCO2	11	112085592	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	21388	112085592	22920924	3286	28973										
DRD2	0	genome.wustl.edu	37	chr11	113288833	113288833	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaagatgtcacagtgaatcCtgctgaatttccactcacct	7	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	113288833	113288833	C	A	SNP	DRD2	ENST00000355319	human	ensembl	69_37n	-1	known	missense	c.311	p.R104M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	189	1	0.52	184	24	11.54	-	-	-	A	113288833	C	A	113288833	3	1	275	1	0	0	0	0	1	0	0	0	4792	681	24	4	1044	4	DRD2	11	113288833	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1203241	113288833	21717683	3287	28974										
BUD13	0	genome.wustl.edu	37	chr11	116633414	116633414	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttccaatgtggagaagtCttgctagaggctctttctgg	11	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	116633414	116633414	C	T	SNP	BUD13	ENST00000419189	human	ensembl	69_37n	-1	known	missense	c.139	p.D47N	0.091	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BUD13	HGNC	ENSG00000137656	244	1	0.41	167	36	17.73	-	-	-	T	116633414	C	T	116633414	3	4	275	1	0	0	0	0	1	0	0	0	1582	912	32	2	996	2	BUD13	11	116633414	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3344581	116633414	18373102	3288	28975										
APOA5	0	genome.wustl.edu	37	chr11	116660863	116660863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaggggtcccccagatggCtgtggccctggtcatgaagg	15	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	116660863	116660863	C	T	SNP	APOA5	ENST00000227665	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361N	0.003	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243	97	0	0	86	18	17.31	-	-	-	T	116660863	C	T	116660863	3	4	275	1	0	0	0	0	1	0	0	0	786	797	28	4	22	4	APOA5	11	116660863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27449	116660863	18345653	3289	28976										
APOA4	0	genome.wustl.edu	37	chr11	116692346	116692346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcgtgctgacctgggtgCgcagctggtccgcgtagggc	17	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	116692346	116692346	C	T	SNP	APOA4	ENST00000357780	human	ensembl	69_37n	-1	known	missense	c.428	p.R143H	0.229	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244	49	0	0	27	4	12.9	-	-	-	T	116692346	C	T	116692346	3	4	275	1	0	0	0	0	1	0	0	0	785	768	27	1	766	1	APOA4	11	116692346	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31483	116692346	18314170	3290	28977										
SIK3	0	genome.wustl.edu	37	chr11	116747071	116747071	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctttagttgttggcattcAgctattaactgtaacataaa	6	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	116747071	116747071	A	G	SNP	SIK3	ENST00000445177	human	ensembl	69_37n	-1	novel	nonstop	c.973	p.*325R	0.965	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIK3	HGNC	ENSG00000160584	499	0	0	370	51	12.11	-	-	-	G	116747071	A	G	116747071	4	3	275	1	0	0	0	0	0	0	0	0	14408	175	7	5	3036	5	SIK3	11	116747071	Nonstop_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	54725	116747071	18259445	3291	28978										
RNF214	0	genome.wustl.edu	37	chr11	117109324	117109324	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgtttgatagcaccaaaGactctgcacagaagcagaag	11	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	117109324	117109324	G	A	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	missense	c.115	p.D39N	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257	67	0	0	61	11	15.28	-	-	-	A	117109324	G	A	117109324	3	1	275	1	0	0	0	0	1	0	0	0	13564	942	33	2	121	2	RNF214	11	117109324	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	362253	117109324	17897192	3292	28979										
SCN4B	0	genome.wustl.edu	37	chr11	118015788	118015788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacaatcttgaatgcgtcaCtgctgttgtaggtccaccgg	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118015788	118015788	C	A	SNP	SCN4B	ENST00000324727	human	ensembl	69_37n	-1	known	missense	c.218	p.S73I	0.821	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN4B	HGNC	ENSG00000177098	104	0	0	62	17	21.52	-	-	-	A	118015788	C	A	118015788	3	1	275	1	0	0	0	0	1	0	0	0	14009	565	20	4	484	4	SCN4B	11	118015788	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	906464	118015788	16990728	3293	28980										
UBE4A	0	genome.wustl.edu	37	chr11	118242316	118242316	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgctaaatctctctgctgatCgagatgcaggagagaggcac	12	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118242316	118242316	C	T	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	nonsense	c.496	p.R166*	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	283	0	0	257	47	15.46	-	-	-	T	118242316	C	T	118242316	4	4	275	1	0	0	0	0	0	1	0	0	16979	876	31	1	510	1	UBE4A	11	118242316	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	226528	118242316	16764200	3294	28981										
MLL	0	genome.wustl.edu	37	chr11	118343828	118343828	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccaatatttgataatttcCgaccccctccactaactccc	2	16	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118343828	118343828	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	nonsense	c.1954	p.R652*	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	73	0	0	51	14	21.54	-	-	-	T	118343828	C	T	118343828	4	4	275	1	0	0	0	0	0	1	0	0	9691	644	23	1	1964	1	MLL	11	118343828	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101512	118343828	16662688	3295	28982										
MLL	0	genome.wustl.edu	37	chr11	118390417	118390417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctggtgccaagcactgtcGaaattacaaattccgtttcc	8	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118390417	118390417	G	A	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.11222	p.R3741Q	1.000	pfam_FYrich_C,smart_FYrich_C,pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	202	0	0	196	43	17.92	-	-	-	A	118390417	G	A	118390417	3	1	275	1	0	0	0	0	1	0	0	0	9691	1058	37	1	11348	1	MLL	11	118390417	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46589	118390417	16616099	3296	28983										
TREH	0	genome.wustl.edu	37	chr11	118534083	118534083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggcatgtccacaaactgcTtgtcatcctggtagagcttg	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118534083	118534083	T	C	SNP	TREH	ENST00000264029	human	ensembl	69_37n	-1	known	missense	c.155	p.K52R	1.000	pfam_Glyco_hydro_37	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like,prints_Glyco_hydro_37	-	no_errors	TREH	HGNC	ENSG00000118094	243	0	0	170	19	10.05	-	-	-	C	118534083	T	C	118534083	3	2	275	1	0	0	0	0	1	0	0	0	16565	1609	56	5	1651	5	TREH	11	118534083	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	143666	118534083	16472433	3297	28984										
SLC37A4	0	genome.wustl.edu	37	chr11	118898961	118898961	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgggccaggccattaagGaaccagagggcagcaaagac	13	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118898961	118898961	G	A	SNP	SLC37A4	ENST00000330775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC37A4	HGNC	ENSG00000137700	110	0	0	71	22	23.4	-	-	-	A	118898961	G	A	118898961	1	1	275	0	1	0	0	0	0	0	0	0	14689	1165	41	2		2	SLC37A4	11	118898961	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	364878	118898961	16107555	3298	28985										
HYOU1	0	genome.wustl.edu	37	chr11	118925946	118925946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgggtcgaaagtcagctCgtgctccgggaagcgggcct	16	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	118925946	118925946	C	T	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.370	p.E124K	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	114	0	0	75	12	13.79	-	-	-	T	118925946	C	T	118925946	3	4	275	1	0	0	0	0	1	0	0	0	7524	893	31	1	2717	1	HYOU1	11	118925946	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26985	118925946	16080570	3299	28986										
HINFP	0	genome.wustl.edu	37	chr11	119003411	119003411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgtgacatgacctgcccGctgccttcctccctccgcaa	8	18	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	119003411	119003411	G	A	SNP	HINFP	ENST00000350777	human	ensembl	69_37n	1	known	silent	c.795	p.P265	0.309	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273	230	1	0.43	208	46	17.9	-	-	-	A	119003411	G	A	119003411	2	1	275	1	0	0	0	0	0	0	0	1	7161	1074	38	1		1	HINFP	11	119003411	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77465	119003411	16003105	3300	28987										
MCAM	0	genome.wustl.edu	37	chr11	119181151	119181151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaacttcaactacaagttCgctcttacgagacgggggta	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	119181151	119181151	C	T	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	missense	c.1819	p.E607K	0.997	NULL	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	58	0	0	35	9	20.45	-	-	-	T	119181151	C	T	119181151	3	4	275	1	0	0	0	0	1	0	0	0	9439	893	31	1	129	1	MCAM	11	119181151	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	177740	119181151	15825365	3301	28988										
OAF	0	genome.wustl.edu	37	chr11	120096397	120096397	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcttccgggccctgatcCtgggggagctggagaagggg	19	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120096397	120096397	C	T	SNP	OAF	ENST00000328965	human	ensembl	69_37n	1	known	silent	c.259	p.L87	1.000	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232	115	0	0	51	30	36.59	-	-	-	T	120096397	C	T	120096397	2	4	275	1	0	0	0	0	0	0	0	1	10871	680	24	4		4	OAF	11	120096397	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	915246	120096397	14910119	3302	28989										
TMEM136	0	genome.wustl.edu	37	chr11	120201149	120201149	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatggaggaagagcatcaaGaagtaccatgcttggagaag	14	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120201149	120201149	G	T	SNP	TMEM136	ENST00000314475	human	ensembl	69_37n	1	known	missense	c.729	p.K243N	1.000	smart_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM136	HGNC	ENSG00000181264	256	0	0	142	52	26.8	-	-	-	T	120201149	G	T	120201149	3	4	275	1	0	0	0	0	1	0	0	0	16147	933	33	2	382	2	TMEM136	11	120201149	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	104752	120201149	14805367	3303	28990										
ARHGEF12	0	genome.wustl.edu	37	chr11	120278467	120278467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatggaagtattttgaaccGagagtcaccaacagataaga	10	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120278467	120278467	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.77	p.R26Q	1.000	superfamily_PDZ	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	265	0	0	153	56	26.79	-	-	-	A	120278467	G	A	120278467	3	1	275	1	0	0	0	0	1	0	0	0	899	1058	37	1	87	1	ARHGEF12	11	120278467	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77318	120278467	14728049	3304	28991										
ARHGEF12	0	genome.wustl.edu	37	chr11	120317156	120317156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggatctgcatcgccacTatatccaaactatgcaagaa	7	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120317156	120317156	T	C	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.1333	p.Y445H	1.000	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	248	0	0	175	62	26.16	-	-	-	C	120317156	T	C	120317156	3	2	275	1	0	0	0	0	1	0	0	0	899	1522	53	5	1456	5	ARHGEF12	11	120317156	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	38689	120317156	14689360	3305	28992										
ARHGEF12	0	genome.wustl.edu	37	chr11	120348899	120348899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagaatctaccttaatatcGtcaaaacctcagtctcattc	3	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120348899	120348899	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	silent	c.3510	p.S1170	0.056	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	111	0	0	111	14	11.11	-	-	-	A	120348899	G	A	120348899	2	1	275	1	0	0	0	0	0	0	0	1	899	1132	40	1		1	ARHGEF12	11	120348899	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31743	120348899	14657617	3306	28993										
TECTA	0	genome.wustl.edu	37	chr11	120998994	120998994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcttggctgcggggacttCggatcctggtggccgaccag	16	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	120998994	120998994	C	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.2308	p.R770W	0.957	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	56	0	0	21	7	25	-	-	-	T	120998994	C	T	120998994	3	4	275	1	0	0	0	0	1	0	0	0	15842	875	31	1	2338	1	TECTA	11	120998994	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	650095	120998994	14007522	3307	28994										
SORL1	0	genome.wustl.edu	37	chr11	121414377	121414377	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttcaccatctttggctcGaacaaagagaatgtccacag	8	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	121414377	121414377	G	A	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.1806	p.S602	0.759	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	239	0	0	198	31	13.54	-	-	-	A	121414377	G	A	121414377	2	1	275	1	0	0	0	0	0	0	0	1	15023	1045	37	1		1	SORL1	11	121414377	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	415383	121414377	13592139	3308	28995										
CRTAM	0	genome.wustl.edu	37	chr11	122738243	122738243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcatgaagctgaggaaagCacatgtgatatggaagaaag	12	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	122738243	122738243	C	T	SNP	CRTAM	ENST00000227348	human	ensembl	69_37n	1	known	missense	c.944	p.A315V	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CRTAM	HGNC	ENSG00000109943	124	0	0	136	21	13.29	-	-	-	T	122738243	C	T	122738243	3	4	275	1	0	0	0	0	1	0	0	0	3927	710	25	4	974	4	CRTAM	11	122738243	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1323866	122738243	12268273	3309	28996										
GRAMD1B	0	genome.wustl.edu	37	chr11	123448106	123448106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actccaaccgcagcacgccgGcctgctcgcccatcctccgg	9	21	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	123448106	123448106	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	missense	c.55	p.A19T	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	62	0	0	43	16	26.67	-	-	-	A	123448106	G	A	123448106	3	1	275	1	0	0	0	0	1	0	0	0	6799	1203	42	4	61	4	GRAMD1B	11	123448106	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	709863	123448106	11558410	3310	28997										
GRAMD1B	0	genome.wustl.edu	37	chr11	123464815	123464815	+	Missense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagccccacctacaagcagaGaaatgaagacttcagaaagc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	123464815	123464815	G	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	missense	c.281	p.R94I	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	217	0	0	232	26	10.08	-	-	-	T	123464815	G	T	123464815	3	4	275	1	0	0	0	0	1	0	0	0	6799	942	33	2	295	2	GRAMD1B	11	123464815	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16709	123464815	11541701	3311	28998	244	2								
GRAMD1B	0	genome.wustl.edu	37	chr11	123464823	123464823	+	Missense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctacaagcagagaaatgaaGacttcagaaagctctttaag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	123464823	123464823	G	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	missense	c.289	p.D97Y	1.000	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	199	1	0.5	196	51	20.65	-	-	-	T	123464823	G	T	123464823	3	4	275	1	0	0	0	0	1	0	0	0	6799	942	33	2	303	2	GRAMD1B	11	123464823	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8	123464823	11541693	3312	28999	244	2								
OR6M1	0	genome.wustl.edu	37	chr11	123676536	123676536	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaggggcaatgtcacagaaGaaatgattaatttctttcct	9	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	123676536	123676536	G	T	SNP	OR6M1	ENST00000309154	human	ensembl	69_37n	-1	known	missense	c.522	p.F174L	0.441	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099	228	0	0	140	26	15.66	-	-	-	T	123676536	G	T	123676536	3	4	275	1	0	0	0	0	1	0	0	0	11278	933	33	2	422	2	OR6M1	11	123676536	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	211713	123676536	11329980	3313	29000										
OR10S1	0	genome.wustl.edu	37	chr11	123848156	123848156	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtagacaaacaggcatccagGaaggagaggtgccccaggaa	14	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	123848156	123848156	G	T	SNP	OR10S1	ENST00000531945	human	ensembl	69_37n	-1	known	missense	c.243	p.F81L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	366	0	0	181	77	29.84	-	-	-	T	123848156	G	T	123848156	3	4	275	1	0	0	0	0	1	0	0	0	10991	1165	41	2	756	2	OR10S1	11	123848156	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	171620	123848156	11158360	3314	29001										
SPA17	0	genome.wustl.edu	37	chr11	124545149	124545149	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaggttccataggcagttCttaccaagaagatgtcgatt	9	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	124545149	124545149	C	A	SNP	SPA17	ENST00000529498	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SPA17	HGNC	ENSG00000064199	78	0	0	67	14	17.07	-	-	-	A	124545149	C	A	124545149	1	1	275	0	1	0	0	0	0	0	0	0	15060	928	32	2		2	SPA17	11	124545149	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	696993	124545149	10461367	3315	29002										
ROBO3	0	genome.wustl.edu	37	chr11	124742309	124742309	+	Silent	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccagtcagtcacttcagccGacggggcgcttctcagtgtc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	124742309	124742309	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	silent	c.1191	p.P397	0.010	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	147	0	0	68	20	22.73	-	-	-	A	124742309	G	A	124742309	2	1	275	1	0	0	0	0	0	0	0	1	13601	1045	37	1		1	ROBO3	11	124742309	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	197160	124742309	10264207	3316	29003	245	2								
ROBO3	0	genome.wustl.edu	37	chr11	124742317	124742317	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcacttcagccgacggggcGcttctcagtgtctccaagag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	124742317	124742317	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.1199	p.R400H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	148	0	0	68	20	22.73	-	-	-	A	124742317	G	A	124742317	3	1	275	1	0	0	0	0	1	0	0	0	13601	1087	38	1	1229	1	ROBO3	11	124742317	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8	124742317	10264199	3317	29004	245	2								
ROBO4	0	genome.wustl.edu	37	chr11	124764191	124764191	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcctggcatatgggtggcGatttccagctgggtctgctc	15	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	124764191	124764191	G	T	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	silent	c.1224	p.I408	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	190	0	0	94	32	25.4	-	-	-	T	124764191	G	T	124764191	2	4	275	1	0	0	0	0	0	0	0	1	13602	1048	37	3		3	ROBO4	11	124764191	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21874	124764191	10242325	3318	29005										
EI24	0	genome.wustl.edu	37	chr11	125447783	125447783	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtaatcactgtggcatctCgttaccatcatgtaagcagg	10	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	125447783	125447783	C	T	SNP	EI24	ENST00000527675	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EI24	HGNC	ENSG00000149547	23	0	0	31	6	15.79	-	-	-	T	125447783	C	T	125447783	1	4	275	0	1	0	0	0	0	0	0	0	5020	899	31	1		1	EI24	11	125447783	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	683592	125447783	9558733	3319	29006										
ACRV1	0	genome.wustl.edu	37	chr11	125542516	125542516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattgcagaaagattgatttCgacagcatataatttgcatc	7	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	125542516	125542516	C	T	SNP	ACRV1	ENST00000533904	human	ensembl	69_37n	-1	known	missense	c.770	p.R257Q	0.537	NULL	NULL	-	no_errors	ACRV1	HGNC	ENSG00000134940	451	1	0.22	379	54	12.41	-	-	-	T	125542516	C	T	125542516	3	4	275	1	0	0	0	0	1	0	0	0	172	884	31	1	31	1	ACRV1	11	125542516	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	94733	125542516	9464000	3320	29007										
DDX25	0	genome.wustl.edu	37	chr11	125775965	125775965	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttttttatttttgcttttCtagtggatttggcagctaat	7	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	125775965	125775965	C	A	SNP	DDX25	ENST00000526875	human	ensembl	69_37n	1	novel	missense	c.2	p.S1Y	0.001	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX25	HGNC	ENSG00000109832	140	0	0	77	12	13.48	-	-	-	A	125775965	C	A	125775965	3	1	275	1	0	0	0	0	1	0	0	0	4383	928	32	2		2	DDX25	11	125775965	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	233449	125775965	9230551	3321	29008										
FOXRED1	0	genome.wustl.edu	37	chr11	126141728	126141728	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctaggatcttcctcagtcGaaccaggaagcttggcaata	9	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	126141728	126141728	G	A	SNP	FOXRED1	ENST00000526366	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FOXRED1	HGNC	ENSG00000110074	16	0	0	17	7	29.17	-	-	-	A	126141728	G	A	126141728	1	1	275	0	1	0	0	0	0	0	0	0	6081	1073	37	1		1	FOXRED1	11	126141728	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	365763	126141728	8864788	3322	29009										
C11orf45	0	genome.wustl.edu	37	chr11	128774420	128774420	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcgtccagggcggagaggtCgtgctactcaggtgtgcact	16	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	128774420	128774420	C	T	SNP	C11orf45	ENST00000310799	human	ensembl	69_37n	-1	known	silent	c.42	p.T14	0.000	NULL	NULL	-	no_errors	C11orf45	HGNC	ENSG00000174370	61	0	0	31	4	11.43	-	-	-	T	128774420	C	T	128774420	2	4	275	1	0	0	0	0	0	0	0	1	1653	871	31	1		1	C11orf45	11	128774420	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2632692	128774420	6232096	3323	29010										
KCNJ5	0	genome.wustl.edu	37	chr11	128781576	128781576	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgaaaacctcagtggcttCgtgtccgctttcctgttctc	9	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	128781576	128781576	C	T	SNP	KCNJ5	ENST00000529694	human	ensembl	69_37n	1	known	silent	c.408	p.F136	0.975	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457	114	1	0.87	82	15	15.46	-	-	-	T	128781576	C	T	128781576	2	4	275	1	0	0	0	0	0	0	0	1	8108	883	31	1		1	KCNJ5	11	128781576	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7156	128781576	6224940	3324	29011										
ARHGAP32	0	genome.wustl.edu	37	chr11	128843044	128843044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattctggaggtggaactgCtctgctggtcgatcggtttg	14	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	128843044	128843044	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	silent	c.3315	p.E1105	0.890	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	325	0	0	167	42	20.1	-	-	-	T	128843044	C	T	128843044	2	4	275	1	0	0	0	0	0	0	0	1	883	796	28	4		4	ARHGAP32	11	128843044	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61468	128843044	6163472	3325	29012										
NFRKB	0	genome.wustl.edu	37	chr11	129739730	129739730	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcagccacactcacgccaaGagctggcatcaagcgaaaag	10	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	129739730	129739730	G	T	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	missense	c.3265	p.L1089I	0.630	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	184	0	0	196	27	12.11	-	-	-	T	129739730	G	T	129739730	3	4	275	1	0	0	0	0	1	0	0	0	10456	942	33	2	725	2	NFRKB	11	129739730	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	896686	129739730	5266786	3326	29013										
JAM3	0	genome.wustl.edu	37	chr11	134014272	134014272	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaattgatgagattgtgatCgagttaactgtgcaaggtag	13	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	134014272	134014272	C	T	SNP	JAM3	ENST00000529443	human	ensembl	69_37n	1	known	silent	c.528	p.I176	0.559	smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	JAM3	HGNC	ENSG00000166086	232	0	0	118	54	31.4	-	-	-	T	134014272	C	T	134014272	2	4	275	1	0	0	0	0	0	0	0	1	7998	874	31	1		1	JAM3	11	134014272	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4274542	134014272	992244	3327	29014										
VPS26B	0	genome.wustl.edu	37	chr11	134104820	134104820	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgatcgcgggaaccaccatGagtttgtgtccctggtgaag	13	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	11	134104820	134104820	G	T	SNP	VPS26B	ENST00000281187	human	ensembl	69_37n	1	known	nonsense	c.253	p.E85*	1.000	pfam_VPS26,superfamily_Ig_E-set	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502	85	0	0	57	8	12.31	-	-	-	T	134104820	G	T	134104820	4	4	275	1	0	0	0	0	0	1	0	0	17295	1291	45	2	259	2	VPS26B	11	134104820	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90548	134104820	901696	3328	29015										
IQSEC3	0	genome.wustl.edu	37	chr12	176541	176541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgctgcgctgctgccggaGccctccttcagcacaaatcc	10	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	176541	176541	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.493	p.A165T	0.999	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	78	0	0	32	9	21.95	-	-	-	A	176541	G	A	176541	3	1	275	1	0	0	0	0	1	0	0	0	7873	971	34	4	495	4	IQSEC3	12	176541	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		176541	133675354	3329	29016										
KDM5A	0	genome.wustl.edu	37	chr12	432896	432896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgcatgctgaacactgccGctcatcatcaggaacaagtt	8	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	432896	432896	G	A	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.2020	p.R674W	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	370	0	0	203	67	24.81	-	-	-	A	432896	G	A	432896	3	1	275	1	0	0	0	0	1	0	0	0	8186	1086	38	1	3108	1	KDM5A	12	432896	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	256355	432896	133418999	3330	29017										
KDM5A	0	genome.wustl.edu	37	chr12	464403	464403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttggtaacttttcgtcttCgggtgacctcatcttgaaat	9	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	464403	464403	C	T	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.791	p.R264Q	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	248	0	0	166	37	18.14	-	-	-	T	464403	C	T	464403	3	4	275	1	0	0	0	0	1	0	0	0	8186	884	31	1	4369	1	KDM5A	12	464403	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31507	464403	133387492	3331	29018										
CCDC77	0	genome.wustl.edu	37	chr12	549873	549873	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagaacttgcccgaattCgtgaggaagagggaatgagg	15	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	549873	549873	C	A	SNP	CCDC77	ENST00000239830	human	ensembl	69_37n	1	known	missense	c.1132	p.R378S	1.000	NULL	NULL	-	no_errors	CCDC77	HGNC	ENSG00000120647	238	0	0	255	91	26.3	-	-	-	A	549873	C	A	549873	3	1	275	1	0	0	0	0	1	0	0	0	2878	884	31	3	1166	3	CCDC77	12	549873	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85470	549873	133302022	3332	29019										
WNK1	0	genome.wustl.edu	37	chr12	1005287	1005287	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagggtaaaaataagtcagaAgatgcaaagtctgttcattt	10	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	1005287	1005287	A	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.7128	p.E2376D	0.986	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	162	0	0	127	31	19.62	-	-	-	C	1005287	A	C	1005287	3	2	275	1	0	0	0	0	1	0	0	0	17474	69	3	5	7230	5	WNK1	12	1005287	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	455414	1005287	132846608	3333	29020										
WNK1	0	genome.wustl.edu	37	chr12	1006808	1006808	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaaggcagcaaatctagtCgaagcagttccttggggaat	12	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	1006808	1006808	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	nonsense	c.7903	p.R2635*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	166	0	0	140	21	13.04	-	-	-	T	1006808	C	T	1006808	4	4	275	1	0	0	0	0	0	1	0	0	17474	876	31	1	8009	1	WNK1	12	1006808	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1521	1006808	132845087	3334	29021										
ERC1	0	genome.wustl.edu	37	chr12	1137499	1137499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccactgtacctcactcccttCgtcaggcgagagataacaca	7	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	1137499	1137499	C	T	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.430	p.R144C	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	240	0	0	194	30	13.33	-	-	-	T	1137499	C	T	1137499	3	4	275	1	0	0	0	0	1	0	0	0	5247	884	31	1	432	1	ERC1	12	1137499	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	130691	1137499	132714396	3335	29022										
ERC1	0	genome.wustl.edu	37	chr12	1481061	1481061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagctctcttggagctttCgtcctctaagaagaagaccc	8	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	1481061	1481061	C	T	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.2843	p.S948L	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	169	0	0	96	19	16.52	-	-	-	T	1481061	C	T	1481061	3	4	275	1	0	0	0	0	1	0	0	0	5247	893	31	1	2901	1	ERC1	12	1481061	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	343562	1481061	132370834	3336	29023										
CACNA1C	0	genome.wustl.edu	37	chr12	2595325	2595325	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggtccccctgctgcacatCgccctgcttgtgctgtttgt	10	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	2595325	2595325	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.813	p.I271	0.992	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	213	0	0	160	31	16.15	-	-	-	T	2595325	C	T	2595325	2	4	275	1	0	0	0	0	0	0	0	1	2565	874	31	1		1	CACNA1C	12	2595325	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1114264	2595325	131256570	3337	29024										
CACNA1C	0	genome.wustl.edu	37	chr12	2613689	2613689	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcgttctaaatctggttCtcggtgtgttgagcgggtaa	12	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	2613689	2613689	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.1201	p.L401F	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	281	0	0	157	71	31.14	-	-	-	T	2613689	C	T	2613689	3	4	275	1	0	0	0	0	1	0	0	0	2565	913	32	2	1231	2	CACNA1C	12	2613689	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18364	2613689	131238206	3338	29025										
ITFG2	0	genome.wustl.edu	37	chr12	2929322	2929322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagctttccgctgggaggaGctaggtgagggtcctgaaca	16	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	2929322	2929322	G	A	SNP	ITFG2	ENST00000537851	human	ensembl	69_37n	1	known	missense	c.167	p.S56N	0.028	NULL	NULL	-	no_errors	ITFG2	HGNC	ENSG00000111203	448	0	0	367	48	11.48	-	-	-	A	2929322	G	A	2929322	3	1	275	1	0	0	0	0	1	0	0	0	7924	962	34	4	495	4	ITFG2	12	2929322	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	315633	2929322	130922573	3339	29026										
FOXM1	0	genome.wustl.edu	37	chr12	2981307	2981307	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattctccttttcctccatCtcttgcttgatgctgcggga	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	2981307	2981307	C	A	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	missense	c.609	p.E203D	0.023	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	71	0	0	43	5	10.42	-	-	-	A	2981307	C	A	2981307	3	1	275	1	0	0	0	0	1	0	0	0	6066	912	32	2	1828	2	FOXM1	12	2981307	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	51985	2981307	130870588	3340	29027										
PRMT8	0	genome.wustl.edu	37	chr12	3649918	3649918	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggagatgacctcgagagaTtattacttcgactcctatgc	10	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	3649918	3649918	T	G	SNP	PRMT8	ENST00000382622	human	ensembl	69_37n	1	known	missense	c.222	p.D74E	0.995	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218	94	0	0	50	12	19.35	-	-	-	G	3649918	T	G	3649918	3	3	275	1	0	0	0	0	1	0	0	0	12623	1490	52	5	228	5	PRMT8	12	3649918	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	668611	3649918	130201977	3341	29028										
PARP11	0	genome.wustl.edu	37	chr12	3921319	3921319	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctatcaagtactcaggataGatttggttggcatcaaaaac	8	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	3921319	3921319	G	T	SNP	PARP11	ENST00000228820	human	ensembl	69_37n	-1	known	silent	c.987	p.I329	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224	502	0	0	343	46	11.79	-	-	-	T	3921319	G	T	3921319	2	4	275	1	0	0	0	0	0	0	0	1	11529	932	33	2		2	PARP11	12	3921319	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	271401	3921319	129930576	3342	29029										
AKAP3	0	genome.wustl.edu	37	chr12	4736363	4736363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacttaaggcaagattcatCgggagctacaggaggttcat	12	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	4736363	4736363	C	T	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	missense	c.1705	p.D569N	0.003	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	99	0	0	61	9	12.86	-	-	-	T	4736363	C	T	4736363	3	4	275	1	0	0	0	0	1	0	0	0	452	884	31	1	864	1	AKAP3	12	4736363	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	815044	4736363	129115532	3343	29030										
GALNT8	0	genome.wustl.edu	37	chr12	4855364	4855364	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcacttcctgggagagatCgggtctctggatggtggaat	16	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	4855364	4855364	C	T	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	silent	c.1113	p.I371	0.133	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	1147	0	0	739	247	25	-	-	-	T	4855364	C	T	4855364	2	4	275	1	0	0	0	0	0	0	0	1	6269	874	31	1		1	GALNT8	12	4855364	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	119001	4855364	128996531	3344	29031										
KCNA1	0	genome.wustl.edu	37	chr12	5021916	5021916	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtctgagtacatggagatcGaagaggatatgaataatagc	12	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	5021916	5021916	G	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	nonsense	c.1372	p.E458*	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	99	0	0	77	9	10.47	-	-	-	T	5021916	G	T	5021916	4	4	275	1	0	0	0	0	0	1	0	0	8055	1059	37	3	1374	3	KCNA1	12	5021916	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166552	5021916	128829979	3345	29032										
KCNA5	0	genome.wustl.edu	37	chr12	5153829	5153829	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccgcaaccggcccagcttCgacggtatcctctactacta	8	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	5153829	5153829	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	silent	c.516	p.F172	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	35	0	0	23	10	30.3	-	-	-	T	5153829	C	T	5153829	2	4	275	1	0	0	0	0	0	0	0	1	8060	883	31	1		1	KCNA5	12	5153829	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131913	5153829	128698066	3346	29033										
KCNA5	0	genome.wustl.edu	37	chr12	5154447	5154447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggcaccgaactggcagaGcagcagccagggggtggagg	19	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	5154447	5154447	G	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.1134	p.E378D	0.990	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	57	0	0	23	8	25.81	-	-	-	T	5154447	G	T	5154447	3	4	275	1	0	0	0	0	1	0	0	0	8060	962	34	4	1136	4	KCNA5	12	5154447	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	618	5154447	128697448	3347	29034										
ANO2	0	genome.wustl.edu	37	chr12	5916518	5916518	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctcatagatattgtttgcGatcagagagttaatacctac	8	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	5916518	5916518	G	A	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	silent	c.900	p.I300	0.931	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	265	0	0	209	91	30.23	-	-	-	A	5916518	G	A	5916518	2	1	275	1	0	0	0	0	0	0	0	1	696	1048	37	1		1	ANO2	12	5916518	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	762071	5916518	127935377	3348	29035										
TNFRSF1A	0	genome.wustl.edu	37	chr12	6443283	6443283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcacttggtacagcaaatcGaattattttgagggtggata	12	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6443283	6443283	G	A	SNP	TNFRSF1A	ENST00000162749	human	ensembl	69_37n	-1	known	missense	c.167	p.S56L	0.177	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182	370	0	0	176	56	24.14	-	-	-	A	6443283	G	A	6443283	3	1	275	1	0	0	0	0	1	0	0	0	16388	1059	37	1	1236	1	TNFRSF1A	12	6443283	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	526765	6443283	127408612	3349	29036										
MRPL51	0	genome.wustl.edu	37	chr12	6601583	6601583	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcattccctttccaacctcGaagccatatgggccccctga	6	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6601583	6601583	G	A	SNP	MRPL51	ENST00000229238	human	ensembl	69_37n	-1	known	nonsense	c.241	p.R81*	0.999	pfam_Ribosomal_L51_mit	pfam_Ribosomal_L51_mit	-	no_errors	MRPL51	HGNC	ENSG00000111639	261	1	0.38	150	38	20	-	-	-	A	6601583	G	A	6601583	4	1	275	1	0	0	0	0	0	1	0	0	9887	1066	37	1	149	1	MRPL51	12	6601583	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158300	6601583	127250312	3350	29037										
CHD4	0	genome.wustl.edu	37	chr12	6707238	6707238	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcttccgctgatagtttcGgaacatcacctgacagtgca	8	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6707238	6707238	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	nonsense	c.1714	p.R572*	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	69	0	0	71	14	16.47	-	-	-	A	6707238	G	A	6707238	4	1	275	1	0	0	0	0	0	1	0	0	3356	1124	39	1	4140	1	CHD4	12	6707238	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	105655	6707238	127144657	3351	29038										
ACRBP	0	genome.wustl.edu	37	chr12	6753627	6753627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcttgtgttcttgtgtcGgctcctgcctgtgctccact	10	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6753627	6753627	G	A	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	missense	c.620	p.P207L	0.000	pfam_Proacrosin-bd	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	431	0	0	326	61	15.64	-	-	-	A	6753627	G	A	6753627	3	1	275	1	0	0	0	0	1	0	0	0	170	1116	39	1	1035	1	ACRBP	12	6753627	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46389	6753627	127098268	3352	29039										
ZNF384	0	genome.wustl.edu	37	chr12	6788573	6788573	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcagtctccatagtaacaGaacttactactgagacttgg	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6788573	6788573	G	T	SNP	ZNF384	ENST00000542605	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF384	HGNC	ENSG00000126746	168	0	0	118	48	28.92	-	-	-	T	6788573	G	T	6788573	1	4	275	0	1	0	0	0	0	0	0	0	17971	957	33	2		2	ZNF384	12	6788573	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34946	6788573	127063322	3353	29040										
MLF2	0	genome.wustl.edu	37	chr12	6859522	6859522	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggggaggcatcacccctgGtgaagggatttcacccttca	12	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6859522	6859522	G	A	SNP	MLF2	ENST00000564181	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MLF2	HGNC	ENSG00000089693	125	0	0	74	32	29.91	-	-	-	A	6859522	G	A	6859522	1	1	275	0	1	0	0	0	0	0	0	0	9687	1276	44	4		4	MLF2	12	6859522	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70949	6859522	126992373	3354	29041										
CDCA3	0	genome.wustl.edu	37	chr12	6958719	6958719	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttccctgcatcttgccttaGattctgtacctgaagatctg	7	12	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6958719	6958719	G	T	SNP	CDCA3	ENST00000544610	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	CDCA3	HGNC	ENSG00000111665	100	0	0	81	10	10.99	-	-	-	T	6958719	G	T	6958719	1	4	275	0	1	0	0	0	0	0	0	0	3116	957	33	2		2	CDCA3	12	6958719	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	99197	6958719	126893176	3355	29042										
USP5	0	genome.wustl.edu	37	chr12	6965602	6965602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagttggacaaccctgctcGaatccctccctggtgaggcc	11	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	6965602	6965602	G	A	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.572	p.R191Q	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	47	0	0	24	11	30.56	-	-	-	A	6965602	G	A	6965602	3	1	275	1	0	0	0	0	1	0	0	0	17178	1058	37	1	590	1	USP5	12	6965602	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6883	6965602	126886293	3356	29043										
C1S	0	genome.wustl.edu	37	chr12	7170039	7170039	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagactagggctaaggtagcGgaataaggatgtgggaggga	18	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	7170039	7170039	G	A	SNP	C1S	ENST00000543187	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C1S	HGNC	ENSG00000182326	127	0	0	101	16	13.45	-	-	-	A	7170039	G	A	7170039	1	1	275	0	1	0	0	0	0	0	0	0	1993	1131	39	1		1	C1S	12	7170039	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	204437	7170039	126681856	3357	29044										
ACSM4	0	genome.wustl.edu	37	chr12	7480957	7480957	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttaagagaccaagaatgGagaggaagatagtttgataa	12	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	7480957	7480957	G	A	SNP	ACSM4	ENST00000399422	human	ensembl	69_37n	1	novel	nonsense	c.1731	p.W577*	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009	239	0	0	121	21	14.79	-	-	-	A	7480957	G	A	7480957	4	1	275	1	0	0	0	0	0	1	0	0	186	1183	41	2	1781	2	ACSM4	12	7480957	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	310918	7480957	126370938	3358	29045										
CLEC4C	0	genome.wustl.edu	37	chr12	7882207	7882207	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatttatatgtagatcttCttcatcttgcaaattgactt	4	7	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	7882207	7882207	C	A	SNP	CLEC4C	ENST00000360345	human	ensembl	69_37n	-1	known	missense	c.627	p.K209N	0.392	superfamily_C-type_lectin_fold	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4C	HGNC	ENSG00000198178	225	0	0	150	32	17.58	-	-	-	A	7882207	C	A	7882207	3	1	275	1	0	0	0	0	1	0	0	0	3543	912	32	2	18	2	CLEC4C	12	7882207	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	401250	7882207	125969688	3359	29046										
FOXJ2	0	genome.wustl.edu	37	chr12	8197460	8197460	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaaccatgactttaaattCtcctactcagagatcaactt	3	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8197460	8197460	C	A	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	missense	c.723	p.F241L	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	414	0	0	381	43	10.14	-	-	-	A	8197460	C	A	8197460	3	1	275	1	0	0	0	0	1	0	0	0	6060	912	32	2	741	2	FOXJ2	12	8197460	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	315253	8197460	125654435	3360	29047										
FOXJ2	0	genome.wustl.edu	37	chr12	8200498	8200498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttttcttctctcctggggGacatcccaccctcgaacaac	7	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8200498	8200498	G	A	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	missense	c.838	p.D280N	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	162	0	0	94	16	14.55	-	-	-	A	8200498	G	A	8200498	3	1	275	1	0	0	0	0	1	0	0	0	6060	1174	41	2	860	2	FOXJ2	12	8200498	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3038	8200498	125651397	3361	29048										
CLEC4A	0	genome.wustl.edu	37	chr12	8289398	8289398	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaggatttcatcttccaGaatctgcaagaagaatctgc	7	11	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8289398	8289398	G	T	SNP	CLEC4A	ENST00000546339	human	ensembl	69_37n	1	putative	nonsense	c.181	p.E61*	0.000	NULL	NULL	-	no_start_codon	CLEC4A	HGNC	ENSG00000111729	280	0	0	147	55	27.23	-	-	-	T	8289398	G	T	8289398	4	4	275	1	0	0	0	0	0	1	0	0	3542	933	33	2	483	2	CLEC4A	12	8289398	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	88900	8289398	125562497	3362	29049										
CLEC6A	0	genome.wustl.edu	37	chr12	8618153	8618153	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttccagtgaagagaaggtTtggtctaagagtgagcagaa	13	4	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8618153	8618153	T	G	SNP	CLEC6A	ENST00000382073	human	ensembl	69_37n	1	known	silent	c.297	p.V99	0.007	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC6A	HGNC	ENSG00000205846	336	0	0	275	52	15.9	-	-	-	G	8618153	T	G	8618153	2	3	275	1	0	0	0	0	0	0	0	1	3550	1828	64	5		5	CLEC6A	12	8618153	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	328755	8618153	125233742	3363	29050										
MFAP5	0	genome.wustl.edu	37	chr12	8803117	8803117	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggtgaagcataactgatGaatgcattgtttaaccggcc	10	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8803117	8803117	G	T	SNP	MFAP5	ENST00000359478	human	ensembl	69_37n	-1	known	missense	c.316	p.H106N	0.557	pfam_MAGP	pfam_MAGP	-	no_errors	MFAP5	HGNC	ENSG00000197614	324	0	0	299	39	11.44	-	-	-	T	8803117	G	T	8803117	3	4	275	1	0	0	0	0	1	0	0	0	9589	1290	45	2	217	2	MFAP5	12	8803117	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184964	8803117	125048778	3364	29051										
A2ML1	0	genome.wustl.edu	37	chr12	8975871	8975871	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtacagtgatgttaaattCacggttactctggagaccaa	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	8975871	8975871	C	A	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.156	p.F52L	0.929	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	246	0	0	205	39	15.98	-	-	-	A	8975871	C	A	8975871	3	1	275	1	0	0	0	0	1	0	0	0	5	825	29	2	162	2	A2ML1	12	8975871	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	172754	8975871	124876024	3365	29052										
CLEC2D	0	genome.wustl.edu	37	chr12	9845423	9845423	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctctgtgttttctgaaaGaatttcctgttgagatataa	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	9845423	9845423	G	T	SNP	CLEC2D	ENST00000261340	human	ensembl	69_37n	1	known	splice_site	c.358-1	e4-1	0.023	-	-	-	no_errors	CLEC2D	HGNC	ENSG00000069493	255	0	0	218	39	15.18	-	-	-	T	9845423	G	T	9845423	5	4	275	1	0	0	0	0	0	0	1	0	3538	956	33	2	371	2	CLEC2D	12	9845423	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	869552	9845423	124006472	3366	29053										
CLECL1	0	genome.wustl.edu	37	chr12	9875339	9875339	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagtttcagcaatccagtaAcattttcccttatgcacctt	4	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	9875339	9875339	A	C	SNP	CLECL1	ENST00000327839	human	ensembl	69_37n	-1	known	missense	c.387	p.C129W	0.924	superfamily_C-type_lectin_fold	superfamily_C-type_lectin_fold	-	no_errors	CLECL1	HGNC	ENSG00000184293	141	0	0	109	42	27.81	-	-	-	C	9875339	A	C	9875339	3	2	275	1	0	0	0	0	1	0	0	0	3553	41	2	5	120	5	CLECL1	12	9875339	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	29916	9875339	123976556	3367	29054										
CLEC1B	0	genome.wustl.edu	37	chr12	10150939	10150939	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgcacaggatcagcagaatCaaagccatcacacgccacca	7	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	10150939	10150939	C	A	SNP	CLEC1B	ENST00000298527	human	ensembl	69_37n	-1	known	missense	c.105	p.L35F	0.085	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1B	HGNC	ENSG00000165682	848	1	0.12	460	162	26.05	-	-	-	A	10150939	C	A	10150939	3	1	275	1	0	0	0	0	1	0	0	0	3536	825	29	2	604	2	CLEC1B	12	10150939	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	275600	10150939	123700956	3368	29055										
CLEC9A	0	genome.wustl.edu	37	chr12	10218193	10218193	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcagcacgtggaagtatTttatctgtgagaagtatgcg	12	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	10218193	10218193	T	C	SNP	CLEC9A	ENST00000355819	human	ensembl	69_37n	1	putative	missense	c.688	p.F230L	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC9A	HGNC	ENSG00000197992	365	0	0	234	36	13.24	-	-	-	C	10218193	T	C	10218193	3	2	275	1	0	0	0	0	1	0	0	0	3552	1841	64	5	710	5	CLEC9A	12	10218193	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	67254	10218193	123633702	3369	29056										
KLRC1	0	genome.wustl.edu	37	chr12	10603094	10603094	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagacttacagggaataacaActatcgttaccacagaggcc	8	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	10603094	10603094	A	G	SNP	KLRC1	ENST00000359151	human	ensembl	69_37n	-1	known	missense	c.272	p.V91A	0.001	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC1	HGNC	ENSG00000134545	152	0	0	68	17	20	-	-	-	G	10603094	A	G	10603094	3	3	275	1	0	0	0	0	1	0	0	0	8468	43	2	5	449	5	KLRC1	12	10603094	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	384901	10603094	123248801	3370	29057										
MAGOHB	0	genome.wustl.edu	37	chr12	10760477	10760477	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgatttacatcaataagaGaacctatttttgatgtggta	7	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	10760477	10760477	G	T	SNP	MAGOHB	ENST00000320756	human	ensembl	69_37n	-1	known	missense	c.323	p.S108Y	1.000	pfam_Mago_nashi,superfamily_Mago_nashi	pfam_Mago_nashi,superfamily_Mago_nashi	-	no_errors	MAGOHB	HGNC	ENSG00000111196	351	1	0.28	217	42	16.22	-	-	-	T	10760477	G	T	10760477	3	4	275	1	0	0	0	0	1	0	0	0	9266	942	33	2	131	2	MAGOHB	12	10760477	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	157383	10760477	123091418	3371	29058										
TAS2R50	0	genome.wustl.edu	37	chr12	11139340	11139340	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttggtcagctgaggagatCttttttctcttcacccagtc	8	10	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	11139340	11139340	C	T	SNP	TAS2R50	ENST00000506868	human	ensembl	69_37n	-1	known	silent	c.120	p.K40	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126	110	0	0	49	15	23.44	-	-	-	T	11139340	C	T	11139340	2	4	275	1	0	0	0	0	0	0	0	1	15676	912	32	2		2	TAS2R50	12	11139340	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	378863	11139340	122712555	3372	29059										
TAS2R46	0	genome.wustl.edu	37	chr12	11214799	11214799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctcttgaaccactcaatgGaatttaccaatgctatgaag	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	11214799	11214799	G	A	SNP	TAS2R46	ENST00000533467	human	ensembl	69_37n	-1	known	missense	c.95	p.S32F	0.025	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R46	HGNC	ENSG00000226761	137	0	0	90	12	11.76	-	-	-	A	11214799	G	A	11214799	3	1	275	1	0	0	0	0	1	0	0	0	15674	1174	41	2	838	2	TAS2R46	12	11214799	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75459	11214799	122637096	3373	29060										
TAS2R43	0	genome.wustl.edu	37	chr12	11244177	11244177	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggaccttggtgctgggatCttgagatcctttaccatgga	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	11244177	11244177	C	A	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	missense	c.652	p.D218Y	0.024	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	190	0	0	140	36	20.45	-	-	-	A	11244177	C	A	11244177	3	1	275	1	0	0	0	0	1	0	0	0	15673	913	32	2	281	2	TAS2R43	12	11244177	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29378	11244177	122607718	3374	29061										
PRB1	0	genome.wustl.edu	37	chr12	11507489	11507489	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agattcttcctggctgacatCtagaagagaagcacaggatg	11	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	11507489	11507489	C	A	SNP	PRB1	ENST00000500254	human	ensembl	69_37n	-1	known	splice_site	c.65-1	e2-1	0.155	-	-	-	no_errors	PRB1	HGNC	ENSG00000251655	800	0	0	754	93	10.98	-	-	-	A	11507489	C	A	11507489	5	1	275	1	0	0	0	0	0	0	1	0	12523	927	32	2	939	2	PRB1	12	11507489	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	263312	11507489	122344406	3375	29062										
LRP6	0	genome.wustl.edu	37	chr12	12334106	12334106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctgtccaataaagatttCgtgcaacccagtccacagca	7	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	12334106	12334106	C	T	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.1244	p.R415Q	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	266	1	0.37	190	52	21.31	-	-	-	T	12334106	C	T	12334106	3	4	275	1	0	0	0	0	1	0	0	0	9028	884	31	1	3669	1	LRP6	12	12334106	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	826617	12334106	121517789	3376	29063										
CREBL2	0	genome.wustl.edu	37	chr12	12788823	12788823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaagagaatgccgagcccGaaaaaagctgagatatcagt	11	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	12788823	12788823	G	A	SNP	CREBL2	ENST00000228865	human	ensembl	69_37n	1	known	missense	c.128	p.R43Q	1.000	pfam_bZIP_2,pfam_bZIP_1	pfam_bZIP_2,pfam_bZIP_1	-	no_errors	CREBL2	HGNC	ENSG00000111269	252	0	0	137	32	18.93	-	-	-	A	12788823	G	A	12788823	3	1	275	1	0	0	0	0	1	0	0	0	3892	1058	37	1	134	1	CREBL2	12	12788823	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	454717	12788823	121063072	3377	29064										
GUCY2C	0	genome.wustl.edu	37	chr12	14778781	14778781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaccagatgttccaggtttCgagaatatagctgtagacgt	10	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	14778781	14778781	C	T	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.2318	p.R773Q	0.976	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	485	0	0	342	66	16.18	-	-	-	T	14778781	C	T	14778781	3	4	275	1	0	0	0	0	1	0	0	0	6947	884	31	1	931	1	GUCY2C	12	14778781	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1989958	14778781	119073114	3378	29065										
WBP11	0	genome.wustl.edu	37	chr12	14953717	14953717	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcttccgggcttcctttCctttaaaaggagagagggag	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	14953717	14953717	C	A	SNP	WBP11	ENST00000261167	human	ensembl	69_37n	-1	known	missense	c.65	p.R22L	1.000	pfam_WW_dom-bd_prot_11	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463	126	0	0	75	34	31.19	-	-	-	A	14953717	C	A	14953717	3	1	275	1	0	0	0	0	1	0	0	0	17355	869	30	2	1900	2	WBP11	12	14953717	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	174936	14953717	118898178	3379	29066										
C12orf69	0	genome.wustl.edu	37	chr12	14959392	14959392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcaattccttttggatttTcataatggcttggatgatga	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	14959392	14959392	T	C	SNP	C12orf69	ENST00000316048	human	ensembl	69_37n	-1	known	missense	c.223	p.K75E	0.000	NULL	NULL	-	no_errors	C12orf69	HGNC	ENSG00000179256	284	0	0	164	28	14.51	-	-	-	C	14959392	T	C	14959392	3	2	275	1	0	0	0	0	1	0	0	0	1723	1792	62	5	458	5	C12orf69	12	14959392	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	5675	14959392	118892503	3380	29067										
ERP27	0	genome.wustl.edu	37	chr12	15091359	15091359	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcttttacctgaggatttCtcaacttctgcagcaacttc	5	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	15091359	15091359	C	T	SNP	ERP27	ENST00000266397	human	ensembl	69_37n	-1	known	silent	c.84	p.E28	0.008	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055	186	0	0	135	17	11.18	-	-	-	T	15091359	C	T	15091359	2	4	275	1	0	0	0	0	0	0	0	1	5278	912	32	2		2	ERP27	12	15091359	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	131967	15091359	118760536	3381	29068										
PTPRO	0	genome.wustl.edu	37	chr12	15656883	15656883	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtggatgaagaagcacatGaatttgttgcagaactgaag	13	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	15656883	15656883	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	nonsense	c.1147	p.E383*	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	178	0	0	107	14	11.57	-	-	-	T	15656883	G	T	15656883	4	4	275	1	0	0	0	0	0	1	0	0	12892	1291	45	2	1169	2	PTPRO	12	15656883	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	565524	15656883	118195012	3382	29069										
PTPRO	0	genome.wustl.edu	37	chr12	15704514	15704514	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaatcccaatgtggtagtgAtctccgtgctggccatcctt	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	15704514	15704514	A	C	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	missense	c.2467	p.I823L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	532	0	0	364	45	11	-	-	-	C	15704514	A	C	15704514	3	2	275	1	0	0	0	0	1	0	0	0	12892	333	12	5	2525	5	PTPRO	12	15704514	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	47631	15704514	118147381	3383	29070										
STRAP	0	genome.wustl.edu	37	chr12	16036560	16036560	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgctgtttggggtgcaacActgaataaggatgccaccaa	13	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	16036560	16036560	A	G	SNP	STRAP	ENST00000025399	human	ensembl	69_37n	1	known	silent	c.237	p.T79	0.724	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	194	0	0	128	20	13.42	-	-	-	G	16036560	A	G	16036560	2	3	275	1	0	0	0	0	0	0	0	1	15417	146	6	5		5	STRAP	12	16036560	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	332046	16036560	117815335	3384	29071										
PIK3C2G	0	genome.wustl.edu	37	chr12	18446852	18446852	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagctaattatcttgtcaaaGatctaattgcagaaattctg	6	6	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	18446852	18446852	G	A	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	missense	c.937	p.D313N	1.000	pfam_PI3K_Ras-bd_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	278	1	0.36	116	46	28.22	-	-	-	A	18446852	G	A	18446852	3	1	275	1	0	0	0	0	1	0	0	0	11985	942	33	2	951	2	PIK3C2G	12	18446852	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2410292	18446852	115405043	3385	29072										
PLCZ1	0	genome.wustl.edu	37	chr12	18852748	18852748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgcaattttgaaagttttCgggcttgtgtctccccaata	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	18852748	18852748	C	T	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.1154	p.R385Q	0.998	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	148	0	0	61	21	25.61	-	-	-	T	18852748	C	T	18852748	3	4	275	1	0	0	0	0	1	0	0	0	12118	884	31	1	696	1	PLCZ1	12	18852748	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	405896	18852748	114999147	3386	29073										
PLCZ1	0	genome.wustl.edu	37	chr12	18876251	18876251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgcaaacataccttcttCgataggctcgtatttctgaa	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	18876251	18876251	C	T	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.361	p.E121K	1.000	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	193	1	0.52	162	18	10	-	-	-	T	18876251	C	T	18876251	3	4	275	1	0	0	0	0	1	0	0	0	12118	893	31	1	1513	1	PLCZ1	12	18876251	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23503	18876251	114975644	3387	29074										
PLCZ1	0	genome.wustl.edu	37	chr12	18876393	18876393	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtgttgaaaatctcaatAatttcttctctgtgcgtgat	7	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	18876393	18876393	A	C	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.219	p.I73M	0.041	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	241	0	0	163	31	15.9	-	-	-	C	18876393	A	C	18876393	3	2	275	1	0	0	0	0	1	0	0	0	12118	358	13	5	1655	5	PLCZ1	12	18876393	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	142	18876393	114975502	3388	29075										
PLEKHA5	0	genome.wustl.edu	37	chr12	19460462	19460462	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagcacactgcctaatttCggctgctatagaaccagaga	9	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	19460462	19460462	C	T	SNP	PLEKHA5	ENST00000510738	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	17	0	0	23	12	34.29	-	-	-	T	19460462	C	T	19460462	1	4	275	0	1	0	0	0	0	0	0	0	12133	899	31	1		1	PLEKHA5	12	19460462	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	584069	19460462	114391433	3389	29076										
AEBP2	0	genome.wustl.edu	37	chr12	19615448	19615448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttcttttgtagcataAgcagtactataatggatgta	7	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	19615448	19615448	A	G	SNP	AEBP2	ENST00000398864	human	ensembl	69_37n	1	known	missense	c.676	p.S226G	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	154	0	0	117	45	27.78	-	-	-	G	19615448	A	G	19615448	3	3	275	1	0	0	0	0	1	0	0	0	350	72	3	5	682	5	AEBP2	12	19615448	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	154986	19615448	114236447	3390	29077										
AEBP2	0	genome.wustl.edu	37	chr12	19615601	19615601	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgcttcaactctagcccaGatctggcagatcacatccgt	7	14	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	19615601	19615601	G	A	SNP	AEBP2	ENST00000398864	human	ensembl	69_37n	1	known	missense	c.829	p.D277N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	484	0	0	438	61	12.22	-	-	-	A	19615601	G	A	19615601	3	1	275	1	0	0	0	0	1	0	0	0	350	942	33	2	835	2	AEBP2	12	19615601	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	153	19615601	114236294	3391	29078										
PDE3A	0	genome.wustl.edu	37	chr12	20790046	20790046	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattacaggacaaaccaattCttgctcccgaacctcttgtc	5	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	20790046	20790046	C	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.2014	p.L672I	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	175	0	0	93	36	27.91	-	-	-	A	20790046	C	A	20790046	3	1	275	1	0	0	0	0	1	0	0	0	11710	913	32	2	2048	2	PDE3A	12	20790046	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1174445	20790046	113061849	3392	29079										
SLCO1C1	0	genome.wustl.edu	37	chr12	20893295	20893295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatacctggatacatattaCttctgaggtgagtactgatt	9	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	20893295	20893295	C	T	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.1726	p.L576F	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	318	0	0	244	65	20.97	-	-	-	T	20893295	C	T	20893295	3	4	275	1	0	0	0	0	1	0	0	0	14814	565	20	4	1768	4	SLCO1C1	12	20893295	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103249	20893295	112958600	3393	29080										
RECQL	0	genome.wustl.edu	37	chr12	21623140	21623140	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattcatatcaggcatcatcGatttttcttttcttagctcc	4	11	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	21623140	21623140	G	A	SNP	RECQL	ENST00000421138	human	ensembl	69_37n	-1	known	silent	c.1938	p.I646	0.009	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	235	0	0	121	24	16.44	-	-	-	A	21623140	G	A	21623140	2	1	275	1	0	0	0	0	0	0	0	1	13284	1048	37	1		1	RECQL	12	21623140	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	729845	21623140	112228755	3394	29081										
KCNJ8	0	genome.wustl.edu	37	chr12	21918863	21918863	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaggtttctcatccagctCtcgggcactgcaccgtggag	13	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	21918863	21918863	C	A	SNP	KCNJ8	ENST00000240662	human	ensembl	69_37n	-1	known	nonsense	c.1069	p.E357*	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.1	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	416	0	0	227	34	13.03	-	-	-	A	21918863	C	A	21918863	4	1	275	1	0	0	0	0	0	1	0	0	8110	922	32	2	209	2	KCNJ8	12	21918863	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	295723	21918863	111933032	3395	29082										
CMAS	0	genome.wustl.edu	37	chr12	22208470	22208470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagttgcagaaatgattcGagaagaaggatatgattctg	11	3	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	22208470	22208470	G	A	SNP	CMAS	ENST00000229329	human	ensembl	69_37n	1	known	missense	c.485	p.R162Q	1.000	pfam_Cytidylyl_trans	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726	283	0	0	188	53	21.9	-	-	-	A	22208470	G	A	22208470	3	1	275	1	0	0	0	0	1	0	0	0	3605	1058	37	1	495	1	CMAS	12	22208470	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	289607	22208470	111643425	3396	29083										
ETNK1	0	genome.wustl.edu	37	chr12	22812029	22812029	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatctaatctttggctaaaGatgggaaagtatttctctct	7	6	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	22812029	22812029	G	T	SNP	ETNK1	ENST00000266517	human	ensembl	69_37n	1	known	missense	c.765	p.K255N	1.000	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	ETNK1	HGNC	ENSG00000139163	282	1	0.35	181	21	10.4	-	-	-	T	22812029	G	T	22812029	3	4	275	1	0	0	0	0	1	0	0	0	5310	933	33	2	873	2	ETNK1	12	22812029	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	603559	22812029	111039866	3397	29084										
CASC1	0	genome.wustl.edu	37	chr12	25311419	25311419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatttacttttgcttcaagtCgatgccatttttctttctca	4	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	25311419	25311419	C	T	SNP	CASC1	ENST00000395987	human	ensembl	69_37n	-1	known	missense	c.185	p.R62Q	0.000	NULL	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307	597	0	0	265	83	23.78	-	-	-	T	25311419	C	T	25311419	3	4	275	1	0	0	0	0	1	0	0	0	2685	884	31	1	2035	1	CASC1	12	25311419	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2499390	25311419	108540476	3398	29085										
KRAS	0	genome.wustl.edu	37	chr12	25380184	25380184	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacctataatggtgaatatCttcaaatgatttagtattat	5	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	25380184	25380184	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.274	p.D92Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	136	0	0	82	19	18.81	-	-	-	A	25380184	C	A	25380184	3	1	275	1	0	0	0	0	1	0	0	0	8491	913	32	2	428	2	KRAS	12	25380184	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	68765	25380184	108471711	3399	29086										
ITPR2	0	genome.wustl.edu	37	chr12	26551858	26551858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcttttttctgtttttcGcttctgagatcagcaaaagt	6	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	26551858	26551858	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.7647	p.S2549	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	517	0	0	430	58	11.84	-	-	-	A	26551858	G	A	26551858	2	1	275	1	0	0	0	0	0	0	0	1	7975	1078	38	1		1	ITPR2	12	26551858	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1171674	26551858	107300037	3400	29087										
FGFR1OP2	0	genome.wustl.edu	37	chr12	27116368	27116368	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagggttgcaaggaacaaGaacgaatatttcaacttgaa	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	27116368	27116368	G	T	SNP	FGFR1OP2	ENST00000229395	human	ensembl	69_37n	1	known	nonsense	c.604	p.E202*	1.000	pfam_SIKE	pfam_SIKE,superfamily_DNA-bd_dom_put	-	no_errors	FGFR1OP2	HGNC	ENSG00000111790	148	0	0	114	14	10.94	-	-	-	T	27116368	G	T	27116368	4	4	275	1	0	0	0	0	0	1	0	0	5911	943	33	2	631	2	FGFR1OP2	12	27116368	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	564510	27116368	106735527	3401	29088										
TM7SF3	0	genome.wustl.edu	37	chr12	27132787	27132787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaacacagagcatgcagatCgagaggattccaaatcgcca	9	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	27132787	27132787	C	T	SNP	TM7SF3	ENST00000535260	human	ensembl	69_37n	-1	known	missense	c.490	p.D164N	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TM7SF3	HGNC	ENSG00000064115	300	0	0	234	49	17.19	-	-	-	T	27132787	C	T	27132787	3	4	275	1	0	0	0	0	1	0	0	0	16070	871	31	1	609	1	TM7SF3	12	27132787	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16419	27132787	106719108	3402	29089										
C12orf71	0	genome.wustl.edu	37	chr12	27235380	27235380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaattggatttggagctgtCgtcctctatgtcgctgttag	13	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	27235380	27235380	C	T	SNP	C12orf71	ENST00000429849	human	ensembl	69_37n	-1	known	missense	c.37	p.D13N	0.000	NULL	NULL	-	no_errors	C12orf71	HGNC	ENSG00000214700	76	0	0	96	17	15.04	-	-	-	T	27235380	C	T	27235380	3	4	275	1	0	0	0	0	1	0	0	0	1724	884	31	1	780	1	C12orf71	12	27235380	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102593	27235380	106616515	3403	29090										
IPO8	0	genome.wustl.edu	37	chr12	30833446	30833446	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcataaaagattttcagaatTtgtttctgcagtaatacaga	7	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	30833446	30833446	T	G	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.609	p.Q203H	1.000	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	236	0	0	169	27	13.78	-	-	-	G	30833446	T	G	30833446	3	3	275	1	0	0	0	0	1	0	0	0	7852	1838	64	5	2588	5	IPO8	12	30833446	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3598066	30833446	103018449	3404	29091										
DENND5B	0	genome.wustl.edu	37	chr12	31605337	31605337	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcttggataaaatccactTtattggggaactgtggaaat	10	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	31605337	31605337	T	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.1271	p.K424T	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	191	0	0	142	38	21.11	-	-	-	G	31605337	T	G	31605337	3	3	275	1	0	0	0	0	1	0	0	0	4473	1841	64	5	2726	5	DENND5B	12	31605337	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	771891	31605337	102246558	3405	29092										
DENND5B	0	genome.wustl.edu	37	chr12	31605371	31605371	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaattcttcaggcaactCaataaaatggttgtcaatgt	8	6	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	31605371	31605371	C	A	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	nonsense	c.1237	p.E413*	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	156	0	0	113	21	15.67	-	-	-	A	31605371	C	A	31605371	4	1	275	1	0	0	0	0	0	1	0	0	4473	835	29	2	2760	2	DENND5B	12	31605371	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34	31605371	102246524	3406	29093										
BICD1	0	genome.wustl.edu	37	chr12	32369267	32369267	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctgcaggagtcagcatcGaaggaggcttactatctggg	13	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	32369267	32369267	G	A	SNP	BICD1	ENST00000281474	human	ensembl	69_37n	1	known	silent	c.300	p.S100	0.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC-like	-	no_errors	BICD1	HGNC	ENSG00000151746	160	0	0	140	18	11.39	-	-	-	A	32369267	G	A	32369267	2	1	275	1	0	0	0	0	0	0	0	1	1433	1045	37	1		1	BICD1	12	32369267	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	763896	32369267	101482628	3407	29094										
PKP2	0	genome.wustl.edu	37	chr12	32955343	32955343	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttataccgactcaccaatttCattctgcagagaaagattcc	5	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	32955343	32955343	C	A	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	nonsense	c.2293	p.E765*	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	96	0	0	51	17	25	-	-	-	A	32955343	C	A	32955343	4	1	275	1	0	0	0	0	0	1	0	0	12059	835	29	2	368	2	PKP2	12	32955343	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	586076	32955343	100896552	3408	29095										
PKP2	0	genome.wustl.edu	37	chr12	32994102	32994102	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttctgttatcatgagattCttgagtttgtcattagatga	9	5	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	32994102	32994102	C	A	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	missense	c.1548	p.K516N	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	318	0	0	179	67	27.24	-	-	-	A	32994102	C	A	32994102	3	1	275	1	0	0	0	0	1	0	0	0	12059	912	32	2	1129	2	PKP2	12	32994102	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	38759	32994102	100857793	3409	29096										
SYT10	0	genome.wustl.edu	37	chr12	33559900	33559900	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatatgctacaggaaattGaaaagtttcatcaaatagag	7	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	33559900	33559900	G	A	SNP	SYT10	ENST00000228567	human	ensembl	69_37n	-1	known	nonsense	c.901	p.Q301*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975	423	0	0	225	27	10.71	-	-	-	A	33559900	G	A	33559900	4	1	275	1	0	0	0	0	0	1	0	0	15558	1299	45	2	690	2	SYT10	12	33559900	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	565798	33559900	100291995	3410	29097										
CPNE8	0	genome.wustl.edu	37	chr12	39117598	39117598	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttaatgtagtcaaggaatGaaacttctgtttctaccaag	7	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	39117598	39117598	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	nonsense	c.890	p.S297*	1.000	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	254	0	0	136	59	30.26	-	-	-	T	39117598	G	T	39117598	4	4	275	1	0	0	0	0	0	1	0	0	3848	1294	45	2	836	2	CPNE8	12	39117598	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5557698	39117598	94734297	3411	29098										
CPNE8	0	genome.wustl.edu	37	chr12	39268287	39268287	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttacttggatcagatttaGaaaatgtgtctctgtcaaga	8	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	39268287	39268287	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	missense	c.125	p.S42Y	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	134	0	0	63	8	11.27	-	-	-	T	39268287	G	T	39268287	3	4	275	1	0	0	0	0	1	0	0	0	3848	942	33	2	1645	2	CPNE8	12	39268287	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	150689	39268287	94583608	3412	29099										
C12orf40	0	genome.wustl.edu	37	chr12	40040215	40040215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatttagaacttacaatgtCgcctcactgtgtaccttcta	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	40040215	40040215	C	T	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.287	p.S96L	0.995	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	365	0	0	142	83	36.89	-	-	-	T	40040215	C	T	40040215	3	4	275	1	0	0	0	0	1	0	0	0	1698	893	31	1	301	1	C12orf40	12	40040215	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	771928	40040215	93811680	3413	29100										
C12orf40	0	genome.wustl.edu	37	chr12	40085854	40085854	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttggttttctcctagattCtgatggaagaaggaggaata	11	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	40085854	40085854	C	T	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	silent	c.1351	p.L451	0.064	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	130	0	0	68	27	28.42	-	-	-	T	40085854	C	T	40085854	2	4	275	1	0	0	0	0	0	0	0	1	1698	912	32	2		2	C12orf40	12	40085854	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45639	40085854	93766041	3414	29101										
LRRK2	0	genome.wustl.edu	37	chr12	40692214	40692214	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaactctgaaacagtttaAcctgtcatataaccagctgt	5	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	40692214	40692214	A	G	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.3266	p.N1089S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	214	0	0	142	16	10.13	-	-	-	G	40692214	A	G	40692214	3	3	275	1	0	0	0	0	1	0	0	0	9099	43	2	5	3360	5	LRRK2	12	40692214	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	606360	40692214	93159681	3415	29102										
LRRK2	0	genome.wustl.edu	37	chr12	40704384	40704384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agattaccactttgtgaatgCcaccgaggaatctgatgctt	9	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	40704384	40704384	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.4469	p.A1490V	1.000	smart_Small_GTPase_Rab_type	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	212	0	0	125	43	25	-	-	-	T	40704384	C	T	40704384	3	4	275	1	0	0	0	0	1	0	0	0	9099	739	26	4	4591	4	LRRK2	12	40704384	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12170	40704384	93147511	3416	29103										
CNTN1	0	genome.wustl.edu	37	chr12	41333271	41333271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagtaaagggacagagtggCttgtcaatagcagcaggtca	15	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	41333271	41333271	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.1363	p.L455F	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	262	0	0	177	24	11.94	-	-	-	T	41333271	C	T	41333271	3	4	275	1	0	0	0	0	1	0	0	0	3670	797	28	4	1405	4	CNTN1	12	41333271	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	628887	41333271	92518624	3417	29104										
PDZRN4	0	genome.wustl.edu	37	chr12	41967406	41967406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaatggggcgctactggaGcaaagaggagagaaagcagc	16	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	41967406	41967406	G	T	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	missense	c.2825	p.S942I	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	335	0	0	222	33	12.94	-	-	-	T	41967406	G	T	41967406	3	4	275	1	0	0	0	0	1	0	0	0	11783	971	34	4	2936	4	PDZRN4	12	41967406	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	634135	41967406	91884489	3418	29105										
GXYLT1	0	genome.wustl.edu	37	chr12	42491288	42491288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaaatgctggttgcttatCgtcatggtaaacacctctgt	8	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	42491288	42491288	C	T	SNP	GXYLT1	ENST00000398675	human	ensembl	69_37n	-1	known	missense	c.1117	p.D373N	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233	223	0	0	169	23	11.92	-	-	-	T	42491288	C	T	42491288	3	4	275	1	0	0	0	0	1	0	0	0	6954	884	31	1	213	1	GXYLT1	12	42491288	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	523882	42491288	91360607	3419	29106										
YAF2	0	genome.wustl.edu	37	chr12	42555485	42555485	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctttttctactttatcttTtttctctttctttgactgtg	3	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	42555485	42555485	T	G	SNP	YAF2	ENST00000442791	human	ensembl	69_37n	-1	known	missense	c.307	p.K103Q	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	YAF2	HGNC	ENSG00000015153	454	0	0	292	49	14.37	-	-	-	G	42555485	T	G	42555485	3	3	275	1	0	0	0	0	1	0	0	0	17562	1850	64	5	315	5	YAF2	12	42555485	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	64197	42555485	91296410	3420	29107										
ADAMTS20	0	genome.wustl.edu	37	chr12	43769933	43769933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccttagggttctccaagtAcatgtctgcacaataaatct	6	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	43769933	43769933	A	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.5239	p.Y1747H	0.570	pfam_Pept_M12B_GON-ADAMTSs,pfscan_Pept_M12B_GON-ADAMTSs	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	358	0	0	212	25	10.5	-	-	-	G	43769933	A	G	43769933	3	3	275	1	0	0	0	0	1	0	0	0	266	391	14	5	512	5	ADAMTS20	12	43769933	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1214448	43769933	90081962	3421	29108										
ADAMTS20	0	genome.wustl.edu	37	chr12	43822586	43822586	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgggcttgagtacctcttCcacaagatacggagcacttt	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	43822586	43822586	C	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3506	p.G1169V	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	83	0	0	60	14	18.92	-	-	-	A	43822586	C	A	43822586	3	1	275	1	0	0	0	0	1	0	0	0	266	855	30	2	2285	2	ADAMTS20	12	43822586	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	52653	43822586	90029309	3422	29109										
ADAMTS20	0	genome.wustl.edu	37	chr12	43823439	43823439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggggtccaagaaccatgtCgccattgtgccatctttttt	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	43823439	43823439	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3470	p.R1157Q	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	174	0	0	74	33	30.56	-	-	-	T	43823439	C	T	43823439	3	4	275	1	0	0	0	0	1	0	0	0	266	884	31	1	2325	1	ADAMTS20	12	43823439	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	853	43823439	90028456	3423	29110										
PUS7L	0	genome.wustl.edu	37	chr12	44124248	44124248	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagcatcaagatcaaaagaGatcaaaagagacaaagctgt	9	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	44124248	44124248	G	T	SNP	PUS7L	ENST00000344862	human	ensembl	69_37n	-1	known	silent	c.2037	p.I679	0.044	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317	158	1	0.63	121	34	21.94	-	-	-	T	44124248	G	T	44124248	2	4	275	1	0	0	0	0	0	0	0	1	12917	932	33	2		2	PUS7L	12	44124248	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	300809	44124248	89727647	3424	29111										
PUS7L	0	genome.wustl.edu	37	chr12	44139860	44139860	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcttaccttaacattttCtattgcttccataattctct	1	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	44139860	44139860	C	A	SNP	PUS7L	ENST00000344862	human	ensembl	69_37n	-1	known	nonsense	c.1252	p.E418*	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317	93	0	0	61	15	19.74	-	-	-	A	44139860	C	A	44139860	4	1	275	1	0	0	0	0	0	1	0	0	12917	922	32	2	877	2	PUS7L	12	44139860	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15612	44139860	89712035	3425	29112										
TMEM117	0	genome.wustl.edu	37	chr12	44338119	44338119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttctcacatatacaacacGattcttctaatggatgggaa	6	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	44338119	44338119	G	A	SNP	TMEM117	ENST00000536799	human	ensembl	69_37n	1	known	missense	c.172	p.D58N	0.999	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	357	0	0	218	78	26.17	-	-	-	A	44338119	G	A	44338119	3	1	275	1	0	0	0	0	1	0	0	0	16126	1045	37	1	390	1	TMEM117	12	44338119	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	198259	44338119	89513776	3426	29113										
NELL2	0	genome.wustl.edu	37	chr12	45173691	45173691	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggctaaggagagcttgtgCcacttgtcatcagccaaaat	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	45173691	45173691	C	T	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	nonsense	c.600	p.W200*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	201	0	0	150	23	13.29	-	-	-	T	45173691	C	T	45173691	4	4	275	1	0	0	0	0	0	1	0	0	10406	740	26	4	2068	4	NELL2	12	45173691	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	835572	45173691	88678204	3427	29114										
ARID2	0	genome.wustl.edu	37	chr12	46245783	46245783	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaaatgcatgtgggaagtCttttaaatgggagaaagtac	12	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	46245783	46245783	C	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.3877	p.L1293I	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	159	0	0	60	25	29.41	-	-	-	A	46245783	C	A	46245783	3	1	275	1	0	0	0	0	1	0	0	0	917	913	32	2	3935	2	ARID2	12	46245783	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1072092	46245783	87606112	3428	29115										
SLC38A2	0	genome.wustl.edu	37	chr12	46760709	46760709	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaactcatatttcactatGaagaggtagcttgacatagc	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	46760709	46760709	G	T	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	missense	c.501	p.F167L	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	88	0	0	52	18	25.71	-	-	-	T	46760709	G	T	46760709	3	4	275	1	0	0	0	0	1	0	0	0	14693	1281	45	2	1059	2	SLC38A2	12	46760709	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	514926	46760709	87091186	3429	29116										
SLC38A4	0	genome.wustl.edu	37	chr12	47173644	47173644	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgccattgaggtaccattCtctagaagtgagagacaagg	12	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	47173644	47173644	C	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	nonsense	c.577	p.E193*	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	239	1	0.42	156	22	12.36	-	-	-	A	47173644	C	A	47173644	4	1	275	1	0	0	0	0	0	1	0	0	14695	927	32	2	1102	2	SLC38A4	12	47173644	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	412935	47173644	86678251	3430	29117										
SLC38A4	0	genome.wustl.edu	37	chr12	47173742	47173742	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagacatacccagtattttCttcaagtcccatgaatgctc	5	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	47173742	47173742	C	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	nonsense	c.565	p.E189*	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	286	0	0	180	26	12.62	-	-	-	A	47173742	C	A	47173742	4	1	275	1	0	0	0	0	0	1	0	0	14695	922	32	2	1118	2	SLC38A4	12	47173742	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	98	47173742	86678153	3431	29118										
RPAP3	0	genome.wustl.edu	37	chr12	48062755	48062755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattgtctgaaatcagattCgagctggaacgagtttgcag	11	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	48062755	48062755	C	T	SNP	RPAP3	ENST00000005386	human	ensembl	69_37n	-1	known	missense	c.1657	p.E553K	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175	430	0	0	286	48	14.33	-	-	-	T	48062755	C	T	48062755	3	4	275	1	0	0	0	0	1	0	0	0	13629	893	31	1	356	1	RPAP3	12	48062755	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	889013	48062755	85789140	3432	29119										
RPAP3	0	genome.wustl.edu	37	chr12	48095371	48095371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcctaaaattcccatttCgaataggaggtaaattctaa	5	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	48095371	48095371	C	T	SNP	RPAP3	ENST00000005386	human	ensembl	69_37n	-1	known	missense	c.170	p.R57Q	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175	243	0	0	130	59	31.05	-	-	-	T	48095371	C	T	48095371	3	4	275	1	0	0	0	0	1	0	0	0	13629	884	31	1	1887	1	RPAP3	12	48095371	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32616	48095371	85756524	3433	29120										
SLC48A1	0	genome.wustl.edu	37	chr12	48172902	48172902	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctgcgcggcttcttcttCgtgggcgtcctcttctcggc	14	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	48172902	48172902	C	T	SNP	SLC48A1	ENST00000442218	human	ensembl	69_37n	1	known	silent	c.228	p.F76	0.995	NULL	NULL	-	no_errors	SLC48A1	HGNC	ENSG00000211584	161	0	0	75	11	12.79	-	-	-	T	48172902	C	T	48172902	2	4	275	1	0	0	0	0	0	0	0	1	14738	883	31	1		1	SLC48A1	12	48172902	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	77531	48172902	85678993	3434	29121										
COL2A1	0	genome.wustl.edu	37	chr12	48383016	48383016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacagggcacgtaccttggCtccaggagcaccagggaagc	13	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	48383016	48383016	C	T	SNP	COL2A1	ENST00000380518	human	ensembl	69_37n	-1	known	missense	c.1117	p.A373T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	202	0	0	184	23	11.11	-	-	-	T	48383016	C	T	48383016	3	4	275	1	0	0	0	0	1	0	0	0	3717	797	28	4	3494	4	COL2A1	12	48383016	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	210114	48383016	85468879	3435	29122										
OR10AD1	0	genome.wustl.edu	37	chr12	48596596	48596596	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcggaatgaaatatactcGagaaagatgccattgatcag	9	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	48596596	48596596	G	A	SNP	OR10AD1	ENST00000310248	human	ensembl	69_37n	-1	known	silent	c.480	p.L160	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AD1	HGNC	ENSG00000172640	239	0	0	187	23	10.95	-	-	-	A	48596596	G	A	48596596	2	1	275	1	0	0	0	0	0	0	0	1	10969	1045	37	1		1	OR10AD1	12	48596596	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	213580	48596596	85255299	3436	29123										
DDX23	0	genome.wustl.edu	37	chr12	49224335	49224335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctgggtggttggctagttCggggggacaggaagacactg	18	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	49224335	49224335	C	T	SNP	DDX23	ENST00000308025	human	ensembl	69_37n	-1	known	missense	c.2380	p.E794K	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	152	0	0	83	32	27.12	-	-	-	T	49224335	C	T	49224335	3	4	275	1	0	0	0	0	1	0	0	0	4381	893	31	1	86	1	DDX23	12	49224335	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	627739	49224335	84627560	3437	29124										
MLL2	0	genome.wustl.edu	37	chr12	49425078	49425078	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtgctgagttgcacattCtttgcccggagtagcttctg	11	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	49425078	49425078	C	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.13410	p.K4470N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	49	0	0	23	10	30.3	-	-	-	A	49425078	C	A	49425078	3	1	275	1	0	0	0	0	1	0	0	0	9692	912	32	2	3267	2	MLL2	12	49425078	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	200743	49425078	84426817	3438	29125										
LMBR1L	0	genome.wustl.edu	37	chr12	49499722	49499722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttacgcaatcttgttgacgGtggcatcttcatcatccact	7	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	49499722	49499722	G	A	SNP	LMBR1L	ENST00000267102	human	ensembl	69_37n	-1	known	missense	c.176	p.T59I	0.997	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1L	HGNC	ENSG00000139636	84	0	0	81	31	27.43	-	-	-	A	49499722	G	A	49499722	3	1	275	1	0	0	0	0	1	0	0	0	8897	1261	44	4	1353	4	LMBR1L	12	49499722	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74644	49499722	84352173	3439	29126										
PRPF40B	0	genome.wustl.edu	37	chr12	50037486	50037486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctctagatcatggccttcGgaaagccaagaaaccaaaaa	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50037486	50037486	G	A	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	missense	c.2330	p.R777Q	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	228	0	0	168	22	11.58	-	-	-	A	50037486	G	A	50037486	3	1	275	1	0	0	0	0	1	0	0	0	12653	1116	39	1	2420	1	PRPF40B	12	50037486	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	537764	50037486	83814409	3440	29127										
FMNL3	0	genome.wustl.edu	37	chr12	50047068	50047068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctctagttctgccacccGcatcatgttttcattctcta	4	14	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50047068	50047068	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1264	p.R422W	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	224	0	0	112	22	16.3	-	-	-	A	50047068	G	A	50047068	3	1	275	1	0	0	0	0	1	0	0	0	5999	1086	38	1	1875	1	FMNL3	12	50047068	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9582	50047068	83804827	3441	29128										
NCKAP5L	0	genome.wustl.edu	37	chr12	50187179	50187179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcggccaggctgtcctccGagggcatctcttcccgcctc	11	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50187179	50187179	G	A	SNP	NCKAP5L	ENST00000335999	human	ensembl	69_37n	-1	known	missense	c.3296	p.S1099L	0.757	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566	64	0	0	24	6	19.35	-	-	-	A	50187179	G	A	50187179	3	1	275	1	0	0	0	0	1	0	0	0	10296	1059	37	1	724	1	NCKAP5L	12	50187179	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	140111	50187179	83664716	3442	29129										
RACGAP1	0	genome.wustl.edu	37	chr12	50387974	50387974	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaggttctttgaggtttcGaagaaagtcttttagaaggc	12	4	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50387974	50387974	G	A	SNP	RACGAP1	ENST00000312377	human	ensembl	69_37n	-1	known	nonsense	c.1279	p.R427*	0.999	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800	181	0	0	188	50	21.01	-	-	-	A	50387974	G	A	50387974	4	1	275	1	0	0	0	0	0	1	0	0	13060	1066	37	1	643	1	RACGAP1	12	50387974	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	200795	50387974	83463921	3443	29130										
LIMA1	0	genome.wustl.edu	37	chr12	50594643	50594643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattttatgaattttgatttCgccaccactggctttcagct	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50594643	50594643	C	T	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.889	p.E297K	0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	154	0	0	143	39	21.43	-	-	-	T	50594643	C	T	50594643	3	4	275	1	0	0	0	0	1	0	0	0	8851	893	31	1	1413	1	LIMA1	12	50594643	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	206669	50594643	83257252	3444	29131										
LARP4	0	genome.wustl.edu	37	chr12	50855013	50855013	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgaacagatatagttcaaGaaactttccagctgaacggc	9	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50855013	50855013	G	T	SNP	LARP4	ENST00000429001	human	ensembl	69_37n	1	known	missense	c.1235	p.R412I	0.992	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813	115	0	0	120	19	13.67	-	-	-	T	50855013	G	T	50855013	3	4	275	1	0	0	0	0	1	0	0	0	8684	942	33	2	1259	2	LARP4	12	50855013	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	260370	50855013	82996882	3445	29132										
LARP4	0	genome.wustl.edu	37	chr12	50860824	50860824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattttccacctttacctgGaagttcatcaagaatgccag	6	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	50860824	50860824	G	T	SNP	LARP4	ENST00000429001	human	ensembl	69_37n	1	known	missense	c.1484	p.G495V	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813	379	0	0	379	43	10.19	-	-	-	T	50860824	G	T	50860824	3	4	275	1	0	0	0	0	1	0	0	0	8684	1174	41	2	1520	2	LARP4	12	50860824	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5811	50860824	82991071	3446	29133										
METTL7A	0	genome.wustl.edu	37	chr12	51319318	51319318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgtgcagagtgctgagacCggtgagtgaaagggtgtgag	20	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	51319318	51319318	C	A	SNP	METTL7A	ENST00000332160	human	ensembl	69_37n	1	known	missense	c.497	p.P166Q	1.000	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel,pfam_SAM-MeTfrase_NodS-related	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel,pfam_SAM-MeTfrase_NodS-related	-	no_errors	METTL7A	HGNC	ENSG00000185432	51	0	0	37	6	13.95	-	-	-	A	51319318	C	A	51319318	3	1	275	1	0	0	0	0	1	0	0	0	9576	666	23	3	499	3	METTL7A	12	51319318	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	458494	51319318	82532577	3447	29134										
GRASP	0	genome.wustl.edu	37	chr12	52407689	52407689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctatatgggacatcaattCggaaggcagaactggaggct	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52407689	52407689	C	T	SNP	GRASP	ENST00000293662	human	ensembl	69_37n	1	known	missense	c.577	p.R193W	0.994	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRASP	HGNC	ENSG00000161835	91	0	0	35	17	30.91	-	-	-	T	52407689	C	T	52407689	3	4	275	1	0	0	0	0	1	0	0	0	6806	875	31	1	599	1	GRASP	12	52407689	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1088371	52407689	81444206	3448	29135										
NR4A1	0	genome.wustl.edu	37	chr12	52449884	52449884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgtggacaagaggcggcGaaaccgctgccagttctgcc	13	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52449884	52449884	G	A	SNP	NR4A1	ENST00000545748	human	ensembl	69_37n	1	known	missense	c.1109	p.R370Q	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	116	0	0	35	9	20.45	-	-	-	A	52449884	G	A	52449884	3	1	275	1	0	0	0	0	1	0	0	0	10705	1058	37	1	953	1	NR4A1	12	52449884	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42195	52449884	81402011	3449	29136										
KRT83	0	genome.wustl.edu	37	chr12	52714754	52714754	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttgtcgatgaaggccgcGaatctgctgttgagggactt	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52714754	52714754	G	A	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	silent	c.366	p.F122	0.532	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	222	0	0	64	22	25.58	-	-	-	A	52714754	G	A	52714754	2	1	275	1	0	0	0	0	0	0	0	1	8550	1049	37	1		1	KRT83	12	52714754	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	264870	52714754	81137141	3450	29137										
KRT85	0	genome.wustl.edu	37	chr12	52754751	52754751	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccgcctatggctgagggGccagaagtgatctggcgccc	15	13	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52754751	52754751	G	T	SNP	KRT85	ENST00000257901	human	ensembl	69_37n	-1	known	silent	c.1410	p.G470	0.059	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443	135	0	0	64	10	13.51	-	-	-	T	52754751	G	T	52754751	2	4	275	1	0	0	0	0	0	0	0	1	8552	1190	42	4		4	KRT85	12	52754751	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39997	52754751	81097144	3451	29138										
KRT82	0	genome.wustl.edu	37	chr12	52788953	52788953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccccacatggctcgtacaGgaaggcgcctttggagctgc	13	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52788953	52788953	G	T	SNP	KRT82	ENST00000257974	human	ensembl	69_37n	-1	known	missense	c.1348	p.L450M	0.019	NULL	pfam_F,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850	35	0	0	20	21	51.22	-	-	-	T	52788953	G	T	52788953	3	4	275	1	0	0	0	0	1	0	0	0	8549	991	35	4	197	4	KRT82	12	52788953	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34202	52788953	81062942	3452	29139										
KRT75	0	genome.wustl.edu	37	chr12	52824397	52824397	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtattgtgctttgacctcGgcgatgatactatccaggtc	10	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	52824397	52824397	G	A	SNP	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	silent	c.963	p.A321	0.027	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	176	0	0	158	66	29.46	-	-	-	A	52824397	G	A	52824397	2	1	275	1	0	0	0	0	0	0	0	1	8541	1103	39	1		1	KRT75	12	52824397	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35444	52824397	81027498	3453	29140										
KRT73	0	genome.wustl.edu	37	chr12	53003055	53003055	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcacggagttggtatattCtccggacatcctgcaagaga	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	53003055	53003055	C	A	SNP	KRT73	ENST00000305748	human	ensembl	69_37n	-1	known	nonsense	c.1342	p.E448*	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	143	0	0	87	28	24.35	-	-	-	A	53003055	C	A	53003055	4	1	275	1	0	0	0	0	0	1	0	0	8539	922	32	2	288	2	KRT73	12	53003055	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178658	53003055	80848840	3454	29141										
KRT1	0	genome.wustl.edu	37	chr12	53072381	53072381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcagttccgaatccaaccGagattgatcactcttcagtt	6	12	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	53072381	53072381	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.751	p.R251W	0.951	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	260	0	0	222	36	13.95	-	-	-	A	53072381	G	A	53072381	3	1	275	1	0	0	0	0	1	0	0	0	8500	1057	37	1	1215	1	KRT1	12	53072381	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69326	53072381	80779514	3455	29142										
SMUG1	0	genome.wustl.edu	37	chr12	54575840	54575840	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcttggccaagaatgacttCgaggtcttgaatgtgtccca	11	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54575840	54575840	C	T	SNP	SMUG1	ENST00000505662	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMUG1	HGNC	ENSG00000123415	117	0	0	71	9	11.25	-	-	-	T	54575840	C	T	54575840	1	4	275	0	1	0	0	0	0	0	0	0	14907	899	31	1		1	SMUG1	12	54575840	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1503459	54575840	79276055	3456	29143										
ITGA5	0	genome.wustl.edu	37	chr12	54795428	54795428	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaaaggaaaccacgtcgctTtgcgagttgttgagattctt	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54795428	54795428	T	C	SNP	ITGA5	ENST00000293379	human	ensembl	69_37n	-1	known	silent	c.2328	p.Q776	0.989	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	318	0	0	159	53	24.88	-	-	-	C	54795428	T	C	54795428	2	2	275	1	0	0	0	0	0	0	0	1	7933	1838	64	5		5	ITGA5	12	54795428	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	219588	54795428	79056467	3457	29144										
ITGA5	0	genome.wustl.edu	37	chr12	54798511	54798511	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatccattgccatccaggtCtcggcctcctcgaagggcag	10	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54798511	54798511	C	A	SNP	ITGA5	ENST00000293379	human	ensembl	69_37n	-1	known	missense	c.1393	p.D465Y	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	83	0	0	45	5	10	-	-	-	A	54798511	C	A	54798511	3	1	275	1	0	0	0	0	1	0	0	0	7933	913	32	2	1828	2	ITGA5	12	54798511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3083	54798511	79053384	3458	29145										
NCKAP1L	0	genome.wustl.edu	37	chr12	54936426	54936426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcccttatgtcctgcttcGaaatgcctatcgggaggtgt	10	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54936426	54936426	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.3341	p.R1114Q	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	279	0	0	133	49	26.78	-	-	-	A	54936426	G	A	54936426	3	1	275	1	0	0	0	0	1	0	0	0	10294	1058	37	1	3463	1	NCKAP1L	12	54936426	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	137915	54936426	78915469	3459	29146										
PDE1B	0	genome.wustl.edu	37	chr12	54943746	54943746	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtcagcccccagcaagaaGatgtggattaagcttcggtc	11	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54943746	54943746	G	T	SNP	PDE1B	ENST00000243052	human	ensembl	69_37n	1	known	missense	c.90	p.K30N	0.998	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	175	0	0	127	20	13.61	-	-	-	T	54943746	G	T	54943746	3	4	275	1	0	0	0	0	1	0	0	0	11707	933	33	2	92	2	PDE1B	12	54943746	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7320	54943746	78908149	3460	29147										
PPP1R1A	0	genome.wustl.edu	37	chr12	54969463	54969463	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggactgggagggggaaaaGatgctgcctgggtcaggatt	19	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54969463	54969463	G	T	SNP	PPP1R1A	ENST00000547431	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	96	0	0	86	12	12.24	-	-	-	T	54969463	G	T	54969463	1	4	275	0	1	0	0	0	0	0	0	0	12444	957	33	2		2	PPP1R1A	12	54969463	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25717	54969463	78882432	3461	29148										
PPP1R1A	0	genome.wustl.edu	37	chr12	54978101	54978101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggggtggggcggcgcctccGaatctgagggaaggtgggaa	21	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	54978101	54978101	G	A	SNP	PPP1R1A	ENST00000257905	human	ensembl	69_37n	-1	known	missense	c.88	p.R30W	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	265	0	0	186	64	25.4	-	-	-	A	54978101	G	A	54978101	3	1	275	1	0	0	0	0	1	0	0	0	12444	1057	37	1	451	1	PPP1R1A	12	54978101	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8638	54978101	78873794	3462	29149										
LACRT	0	genome.wustl.edu	37	chr12	55025525	55025525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttgggatgcactcactttCgatgaattgttttccacctg	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55025525	55025525	C	T	SNP	LACRT	ENST00000257867	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	0.000	NULL	NULL	-	no_errors	LACRT	HGNC	ENSG00000135413	309	0	0	255	38	12.93	-	-	-	T	55025525	C	T	55025525	3	4	275	1	0	0	0	0	1	0	0	0	8650	893	31	1	72	1	LACRT	12	55025525	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47424	55025525	78826370	3463	29150										
OR6C74	0	genome.wustl.edu	37	chr12	55641243	55641243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatctcaagacacccatgTatttcttcctccgaaatttc	4	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55641243	55641243	T	C	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	missense	c.172	p.Y58H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	309	0	0	194	69	26.24	-	-	-	C	55641243	T	C	55641243	3	2	275	1	0	0	0	0	1	0	0	0	11271	1638	57	5	174	5	OR6C74	12	55641243	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	615718	55641243	78210652	3464	29151										
OR6C1	0	genome.wustl.edu	37	chr12	55714790	55714790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcttgagtatcatgaatcGaagagtctgcacactgcttg	10	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55714790	55714790	G	A	SNP	OR6C1	ENST00000379668	human	ensembl	69_37n	1	known	missense	c.407	p.R136Q	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330	143	0	0	86	23	21.1	-	-	-	A	55714790	G	A	55714790	3	1	275	1	0	0	0	0	1	0	0	0	11263	1058	37	1	409	1	OR6C1	12	55714790	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	73547	55714790	78137105	3465	29152										
OR6C3	0	genome.wustl.edu	37	chr12	55726176	55726176	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcccgtctgccagtcaaaGaaaaaaggctttctccactt	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55726176	55726176	G	T	SNP	OR6C3	ENST00000379667	human	ensembl	69_37n	1	known	missense	c.692	p.R231I	0.052	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329	409	1	0.24	300	39	11.5	-	-	-	T	55726176	G	T	55726176	3	4	275	1	0	0	0	0	1	0	0	0	11265	942	33	2	694	2	OR6C3	12	55726176	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11386	55726176	78125719	3466	29153										
OR6C70	0	genome.wustl.edu	37	chr12	55863430	55863430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatttgaagcacagaaatCcaagttaagacctaaaatca	6	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55863430	55863430	C	T	SNP	OR6C70	ENST00000327335	human	ensembl	69_37n	-1	known	missense	c.493	p.D165N	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954	73	0	0	46	11	19.3	-	-	-	T	55863430	C	T	55863430	3	4	275	1	0	0	0	0	1	0	0	0	11270	855	30	2	447	2	OR6C70	12	55863430	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	137254	55863430	77988465	3467	29154										
OR6C68	0	genome.wustl.edu	37	chr12	55886519	55886519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctaccatgtcatatgatCgctatgtggccatctgcaaa	9	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	55886519	55886519	C	T	SNP	OR6C68	ENST00000379662	human	ensembl	69_37n	1	known	missense	c.373	p.R125C	0.989	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C68	HGNC	ENSG00000205327	411	1	0.24	301	97	24.37	-	-	-	T	55886519	C	T	55886519	3	4	275	1	0	0	0	0	1	0	0	0	11269	884	31	1	375	1	OR6C68	12	55886519	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23089	55886519	77965376	3468	29155										
ITGA7	0	genome.wustl.edu	37	chr12	56096914	56096914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaggcctccagtgcgattCgcctgctgcccaggaagagc	13	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	56096914	56096914	C	T	SNP	ITGA7	ENST00000555687	human	ensembl	69_37n	-1	known	missense	c.134	p.R45Q	0.982	NULL	NULL	-	no_errors	ITGA7	HGNC	ENSG00000135424	68	0	0	40	17	29.82	-	-	-	T	56096914	C	T	56096914	3	4	275	1	0	0	0	0	1	0	0	0	7935	871	31	1	3432	1	ITGA7	12	56096914	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	210395	56096914	77754981	3469	29156										
CD63	0	genome.wustl.edu	37	chr12	56119613	56119613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacctcgacaaaagcaattCcaagggctgctgcagctacc	8	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	56119613	56119613	C	A	SNP	CD63	ENST00000257857	human	ensembl	69_37n	-1	known	missense	c.635	p.G212V	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD63	HGNC	ENSG00000135404	54	0	0	35	20	36.36	-	-	-	A	56119613	C	A	56119613	3	1	275	1	0	0	0	0	1	0	0	0	3058	855	30	2	89	2	CD63	12	56119613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22699	56119613	77732282	3470	29157										
CD63	0	genome.wustl.edu	37	chr12	56119669	56119669	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagccagcccccaatcttCtccacacagccctgaaggtg	7	18	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	56119669	56119669	C	A	SNP	CD63	ENST00000257857	human	ensembl	69_37n	-1	known	missense	c.579	p.E193D	0.957	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD63	HGNC	ENSG00000135404	65	0	0	44	6	12	-	-	-	A	56119669	C	A	56119669	3	1	275	1	0	0	0	0	1	0	0	0	3058	912	32	2	145	2	CD63	12	56119669	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56	56119669	77732226	3471	29158										
DGKA	0	genome.wustl.edu	37	chr12	56335969	56335969	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctccgcagacaaagctaacTtgccagttttgcctcctgtt	7	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	56335969	56335969	T	C	SNP	DGKA	ENST00000331886	human	ensembl	69_37n	1	known	silent	c.1348	p.L450	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357	874	0	0	653	242	26.98	-	-	-	C	56335969	T	C	56335969	2	2	275	1	0	0	0	0	0	0	0	1	4501	1606	56	5		5	DGKA	12	56335969	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	216300	56335969	77515926	3472	29159										
RNF41	0	genome.wustl.edu	37	chr12	56600452	56600452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggcattttcaatcagctCgttgacaatagaagcaggac	11	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	56600452	56600452	C	T	SNP	RNF41	ENST00000345093	human	ensembl	69_37n	-1	known	missense	c.733	p.E245K	1.000	pfam_USP8_interacting	pfam_USP8_interacting,pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,superfamily_TRAF-like,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	RNF41	HGNC	ENSG00000181852	120	0	0	142	20	12.27	-	-	-	T	56600452	C	T	56600452	3	4	275	1	0	0	0	0	1	0	0	0	13580	893	31	1	224	1	RNF41	12	56600452	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	264483	56600452	77251443	3473	29160										
BAZ2A	0	genome.wustl.edu	37	chr12	57009156	57009156	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttgccggctgcccccaagGatgccgttgagtgggtattg	16	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57009156	57009156	G	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	silent	c.378	p.I126	0.998	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	240	1	0.41	202	26	11.4	-	-	-	T	57009156	G	T	57009156	2	4	275	1	0	0	0	0	0	0	0	1	1335	1164	41	2		2	BAZ2A	12	57009156	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	408704	57009156	76842739	3474	29161										
PTGES3	0	genome.wustl.edu	37	chr12	57066820	57066820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatgaagacatagtcccttCgatcgtaccactttgcagaa	7	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57066820	57066820	C	T	SNP	PTGES3	ENST00000262033	human	ensembl	69_37n	-1	known	missense	c.32	p.R11Q	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTGES3	HGNC	ENSG00000110958	68	0	0	67	9	11.84	-	-	-	T	57066820	C	T	57066820	3	4	275	1	0	0	0	0	1	0	0	0	12829	884	31	1	478	1	PTGES3	12	57066820	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	57664	57066820	76785075	3475	29162										
MYO1A	0	genome.wustl.edu	37	chr12	57434983	57434983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttacttctctcttatattcCtcttgctcttctttcagggt	4	11	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57434983	57434983	C	T	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	silent	c.1254	p.E418	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	279	0	0	247	28	10.14	-	-	-	T	57434983	C	T	57434983	2	4	275	1	0	0	0	0	0	0	0	1	10140	680	24	4		4	MYO1A	12	57434983	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	368163	57434983	76416912	3476	29163										
STAT6	0	genome.wustl.edu	37	chr12	57501096	57501096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggggtccctctgatatatgCtctacagaaatgagggtggt	14	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57501096	57501096	C	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.257	p.S86N	0.998	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	174	0	0	88	41	31.78	-	-	-	T	57501096	C	T	57501096	3	4	275	1	0	0	0	0	1	0	0	0	15361	811	28	4	2362	4	STAT6	12	57501096	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	66113	57501096	76350799	3477	29164										
LRP1	0	genome.wustl.edu	37	chr12	57567565	57567565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgcacctgtccctcagctCggtgcatcagcaaagcgtgg	12	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57567565	57567565	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.3349	p.R1117W	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	115	0	0	73	10	11.9	-	-	-	T	57567565	C	T	57567565	3	4	275	1	0	0	0	0	1	0	0	0	9017	875	31	1	3435	1	LRP1	12	57567565	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	66469	57567565	76284330	3478	29165										
ARHGAP9	0	genome.wustl.edu	37	chr12	57872536	57872536	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggaaccatgaaacaacttCggccctggaaacagaaaagg	11	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57872536	57872536	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	69_37n	-1	known	silent	c.321	p.P107	0.010	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	139	0	0	65	26	28.57	-	-	-	T	57872536	C	T	57872536	2	4	275	1	0	0	0	0	0	0	0	1	891	871	31	1		1	ARHGAP9	12	57872536	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	304971	57872536	75979359	3479	29166										
DCTN2	0	genome.wustl.edu	37	chr12	57927751	57927751	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttactttggcagcttgagaGaacttgtcctgctcaggccg	11	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	57927751	57927751	G	T	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	missense	c.669	p.F223L	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	219	0	0	222	45	16.85	-	-	-	T	57927751	G	T	57927751	3	4	275	1	0	0	0	0	1	0	0	0	4338	933	33	2	583	2	DCTN2	12	57927751	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	55215	57927751	75924144	3480	29167										
DTX3	0	genome.wustl.edu	37	chr12	58000767	58000767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcccggctggcccggcttCgggaggagcaccgtgtgtcc	16	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	58000767	58000767	C	T	SNP	DTX3	ENST00000551632	human	ensembl	69_37n	1	known	missense	c.130	p.R44W	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498	136	0	0	49	22	30.99	-	-	-	T	58000767	C	T	58000767	3	4	275	1	0	0	0	0	1	0	0	0	4830	875	31	1	127	1	DTX3	12	58000767	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73016	58000767	75851128	3481	29168										
TSFM	0	genome.wustl.edu	37	chr12	58176905	58176905	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatctaggctgggtctcttCtgcgtcagtcgccccagcca	10	15	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	58176905	58176905	C	A	SNP	TSFM	ENST00000323833	human	ensembl	69_37n	1	known	missense	c.70	p.L24M	0.000	NULL	pfam_Transl_elong_EFTs/EF1B_dimer,pfam_UBA/transl_elong_EF1B_N,superfamily_Transl_elong_EFTs/EF1B_dimer,superfamily_UBA-like	-	no_errors	TSFM	HGNC	ENSG00000123297	52	0	0	52	14	21.21	-	-	-	A	58176905	C	A	58176905	3	1	275	1	0	0	0	0	1	0	0	0	16711	912	32	2	76	2	TSFM	12	58176905	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	176138	58176905	75674990	3482	29169										
AVIL	0	genome.wustl.edu	37	chr12	58200177	58200177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtagtgctctgcctgagttCgcagcagaaagacatcattg	12	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	58200177	58200177	C	T	SNP	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	missense	c.1637	p.R546Q	0.370	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	210	0	0	149	22	12.87	-	-	-	T	58200177	C	T	58200177	3	4	275	1	0	0	0	0	1	0	0	0	1231	884	31	1	850	1	AVIL	12	58200177	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23272	58200177	75651718	3483	29170										
SLC16A7	0	genome.wustl.edu	37	chr12	60168690	60168690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacccaatcaaaccacttCtaagtctaaaaataagactg	5	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	60168690	60168690	C	A	SNP	SLC16A7	ENST00000261187	human	ensembl	69_37n	1	known	missense	c.614	p.S205Y	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596	172	0	0	90	33	26.83	-	-	-	A	60168690	C	A	60168690	3	1	275	1	0	0	0	0	1	0	0	0	14502	913	32	2	624	2	SLC16A7	12	60168690	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1968513	60168690	73683205	3484	29171										
USP15	0	genome.wustl.edu	37	chr12	62795052	62795052	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcatctgaagaccaaatTgtggtaagtttgtcttatat	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	62795052	62795052	T	A	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	silent	c.2760	p.I920	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	169	0	0	105	29	21.64	-	-	-	A	62795052	T	A	62795052	2	1	275	1	0	0	0	0	0	0	0	1	17143	1800	63	5		5	USP15	12	62795052	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2626362	62795052	71056843	3485	29172										
MON2	0	genome.wustl.edu	37	chr12	62981870	62981870	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggcaacaagtaacagaaAttatatttgttttaaaagca	6	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	62981870	62981870	A	C	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	missense	c.4927	p.I1643L	1.000	NULL	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	126	0	0	70	15	17.65	-	-	-	C	62981870	A	C	62981870	3	2	275	1	0	0	0	0	1	0	0	0	9772	101	4	5	5058	5	MON2	12	62981870	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	186818	62981870	70870025	3486	29173										
DPY19L2	0	genome.wustl.edu	37	chr12	63991662	63991662	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatctgtataccttaagattCtggctgctataagatcactc	6	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	63991662	63991662	C	A	SNP	DPY19L2	ENST00000439061	human	ensembl	69_37n	-1	known	nonsense	c.169	p.E57*	0.998	pfam_Dpy-19	pfam_Dpy-19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DPY19L2	HGNC	ENSG00000177990	142	0	0	110	17	13.39	-	-	-	A	63991662	C	A	63991662	4	1	275	1	0	0	0	0	0	1	0	0	4776	913	32	2	924	2	DPY19L2	12	63991662	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1009792	63991662	69860233	3487	29174										
SRGAP1	0	genome.wustl.edu	37	chr12	64456849	64456849	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagcgataagcagagattCatggagatgtaccctgctgc	13	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	64456849	64456849	C	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.954	p.F318L	1.000	superfamily_Fuc/Ara_isomerase_C	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	257	0	0	139	24	14.72	-	-	-	A	64456849	C	A	64456849	3	1	275	1	0	0	0	0	1	0	0	0	15236	825	29	2	980	2	SRGAP1	12	64456849	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	465187	64456849	69395046	3488	29175										
MSRB3	0	genome.wustl.edu	37	chr12	65720625	65720625	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtcgtgtagggataaaaaGaactgtaaggtggtcttttc	14	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	65720625	65720625	G	T	SNP	MSRB3	ENST00000541189	human	ensembl	69_37n	1	putative	nonsense	c.142	p.E48*	1.000	NULL	pfam_Methionine_sulphoxide_MsrB,superfamily_Mss4-like,tigrfam_Methionine_sulphoxide_MsrB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MSRB3	HGNC	ENSG00000174099	280	0	0	146	23	13.61	-	-	-	T	65720625	G	T	65720625	4	4	275	1	0	0	0	0	0	1	0	0	9961	933	33	2	203	2	MSRB3	12	65720625	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1263776	65720625	68131270	3489	29176										
HMGA2	0	genome.wustl.edu	37	chr12	66357061	66357061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcctcacaagagtctgccGaagaggactagggggcgcca	13	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	66357061	66357061	G	A	SNP	HMGA2	ENST00000403681	human	ensembl	69_37n	1	known	missense	c.319	p.E107K	1.000	prints_HMGI/HMGY	pfam_AT_hook_DNA-bd_motif,smart_AT_hook_DNA-bd_motif,prints_HMGI/HMGY,prints_AT_hook-like	-	no_errors	HMGA2	HGNC	ENSG00000149948	215	0	0	103	61	36.75	-	-	-	A	66357061	G	A	66357061	3	1	275	1	0	0	0	0	1	0	0	0	7275	1059	37	1	413	1	HMGA2	12	66357061	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	636436	66357061	67494834	3490	29177										
IRAK3	0	genome.wustl.edu	37	chr12	66620554	66620554	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatattttacagagactgaGaagttctgtctgatttatcc	8	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	66620554	66620554	G	A	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	1	known	silent	c.705	p.E235	0.991	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	309	0	0	225	75	25	-	-	-	A	66620554	G	A	66620554	2	1	275	1	0	0	0	0	0	0	0	1	7878	933	33	2		2	IRAK3	12	66620554	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	263493	66620554	67231341	3491	29178										
CAND1	0	genome.wustl.edu	37	chr12	67696164	67696164	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagtgagacgtgcagctgcGaagtgcttggatgctgtagt	15	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	67696164	67696164	G	A	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	silent	c.1062	p.A354	0.953	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	249	0	0	126	109	46.19	-	-	-	A	67696164	G	A	67696164	2	1	275	1	0	0	0	0	0	0	0	1	2640	1045	37	1		1	CAND1	12	67696164	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1075610	67696164	66155731	3492	29179										
CAND1	0	genome.wustl.edu	37	chr12	67698921	67698921	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgataaatcaagctcatcGaatttgaagatcgatgcttt	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	67698921	67698921	G	A	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	silent	c.1473	p.S491	0.642	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	153	0	0	78	28	26.42	-	-	-	A	67698921	G	A	67698921	2	1	275	1	0	0	0	0	0	0	0	1	2640	1045	37	1		1	CAND1	12	67698921	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2757	67698921	66152974	3493	29180										
CAND1	0	genome.wustl.edu	37	chr12	67705537	67705537	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgcagtactgcagaggtTggaccgacttgttgagccat	13	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	67705537	67705537	T	C	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.3425	p.L1142S	1.000	pfam_TATA-bd_TIP120,superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	202	0	0	89	37	29.37	-	-	-	C	67705537	T	C	67705537	3	2	275	1	0	0	0	0	1	0	0	0	2640	1821	63	5	3479	5	CAND1	12	67705537	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6616	67705537	66146358	3494	29181										
NUP107	0	genome.wustl.edu	37	chr12	69114911	69114911	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttttaggagctttttaataGatacgagagagcaatttatg	10	3	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	69114911	69114911	G	T	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.1265	p.R422I	0.912	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	149	0	0	160	19	10.61	-	-	-	T	69114911	G	T	69114911	3	4	275	1	0	0	0	0	1	0	0	0	10826	942	33	2	1323	2	NUP107	12	69114911	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1409374	69114911	64736984	3495	29182										
NUP107	0	genome.wustl.edu	37	chr12	69128604	69128604	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcatgaacacaaagaaaaGaaatatgaagtaagttaaat	7	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	69128604	69128604	G	T	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.2379	p.K793N	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	142	0	0	119	19	13.77	-	-	-	T	69128604	G	T	69128604	3	4	275	1	0	0	0	0	1	0	0	0	10826	933	33	2	2477	2	NUP107	12	69128604	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13693	69128604	64723291	3496	29183										
CPSF6	0	genome.wustl.edu	37	chr12	69656334	69656334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagcgcgaatatcgtcatCgttagaaggtgggtattcct	13	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	69656334	69656334	C	T	SNP	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	missense	c.1762	p.R588C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	475	0	0	356	131	26.9	-	-	-	T	69656334	C	T	69656334	3	4	275	1	0	0	0	0	1	0	0	0	3859	884	31	1	1685	1	CPSF6	12	69656334	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	527730	69656334	64195561	3497	29184										
YEATS4	0	genome.wustl.edu	37	chr12	69759619	69759619	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaacaggatggggtgaattCgaaataatcatcaaaatatt	9	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	69759619	69759619	C	T	SNP	YEATS4	ENST00000247843	human	ensembl	69_37n	1	known	silent	c.288	p.F96	1.000	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337	206	0	0	139	27	16.27	-	-	-	T	69759619	C	T	69759619	2	4	275	1	0	0	0	0	0	0	0	1	17570	883	31	1		1	YEATS4	12	69759619	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103285	69759619	64092276	3498	29185										
CNOT2	0	genome.wustl.edu	37	chr12	70704744	70704744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgacagtgactaccatgacGaaaacatgtactacagccag	8	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	70704744	70704744	G	A	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.118	p.E40K	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	409	2	0.49	174	52	23.01	-	-	-	A	70704744	G	A	70704744	3	1	275	1	0	0	0	0	1	0	0	0	3649	1059	37	1	124	1	CNOT2	12	70704744	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	945125	70704744	63147151	3499	29186										
PTPRB	0	genome.wustl.edu	37	chr12	70964877	70964877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaagaattttgtattggCggcctggtgttagggaagta	14	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	70964877	70964877	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.3299	p.R1100H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	196	0	0	207	40	16.13	-	-	-	T	70964877	C	T	70964877	3	4	275	1	0	0	0	0	1	0	0	0	12879	768	27	1	3436	1	PTPRB	12	70964877	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	260133	70964877	62887018	3500	29187										
ZFC3H1	0	genome.wustl.edu	37	chr12	72037952	72037952	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctgatttgagagatctcGaatttttctgatttcttcct	6	8	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	72037952	72037952	G	A	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	nonsense	c.1426	p.R476*	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	603	0	0	422	65	13.29	-	-	-	A	72037952	G	A	72037952	4	1	275	1	0	0	0	0	0	1	0	0	17729	1066	37	1	4667	1	ZFC3H1	12	72037952	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1073075	72037952	61813943	3501	29188										
TPH2	0	genome.wustl.edu	37	chr12	72338142	72338142	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagttctgaggttgaaatCtttgtggactgtgagtgtgg	15	3	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	72338142	72338142	C	A	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	silent	c.324	p.I108	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	596	0	0	394	151	27.71	-	-	-	A	72338142	C	A	72338142	2	1	275	1	0	0	0	0	0	0	0	1	16498	903	32	2		2	TPH2	12	72338142	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	300190	72338142	61513753	3502	29189										
KCNC2	0	genome.wustl.edu	37	chr12	75444659	75444659	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattcattagtactagctcGaagagtatgtccaagcaccc	7	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	75444659	75444659	G	A	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	nonsense	c.1126	p.R376*	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	105	0	0	69	14	16.87	-	-	-	A	75444659	G	A	75444659	4	1	275	1	0	0	0	0	0	1	0	0	8069	1066	37	1	868	1	KCNC2	12	75444659	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3106517	75444659	58407236	3503	29190										
CAPS2	0	genome.wustl.edu	37	chr12	75692473	75692473	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacacaccacttacaacataAaaatcaccaagtcggtattg	4	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	75692473	75692473	A	C	SNP	CAPS2	ENST00000409445	human	ensembl	69_37n	-1	known	missense	c.1095	p.F365L	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS2	HGNC	ENSG00000180881	537	0	0	366	136	27.09	-	-	-	C	75692473	A	C	75692473	3	2	275	1	0	0	0	0	1	0	0	0	2663	11	1	5	606	5	CAPS2	12	75692473	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	247814	75692473	58159422	3504	29191										
GLIPR1L2	0	genome.wustl.edu	37	chr12	75804272	75804272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaaaaaaatgtttgtttaCgcataatatttatttacaag	7	3	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	75804272	75804272	C	T	SNP	GLIPR1L2	ENST00000550916	human	ensembl	69_37n	1	known	missense	c.293	p.T98M	0.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR1L2	HGNC	ENSG00000180481	177	0	0	210	32	13.22	-	-	-	T	75804272	C	T	75804272	3	4	275	1	0	0	0	0	1	0	0	0	6495	536	19	1	299	1	GLIPR1L2	12	75804272	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	111799	75804272	58047623	3505	29192										
GLIPR1	0	genome.wustl.edu	37	chr12	75875776	75875776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccattttttctgtgtcttccGccatcacaaactggtatgac	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	75875776	75875776	G	A	SNP	GLIPR1	ENST00000266659	human	ensembl	69_37n	1	known	missense	c.337	p.A113T	0.962	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278	229	1	0.43	166	23	12.04	-	-	-	A	75875776	G	A	75875776	3	1	275	1	0	0	0	0	1	0	0	0	6493	1087	38	1	343	1	GLIPR1	12	75875776	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71504	75875776	57976119	3506	29193										
NAP1L1	0	genome.wustl.edu	37	chr12	76444398	76444398	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtaaaaagtgaccaatttcGaagtctgcagcaaggatagc	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	76444398	76444398	G	A	SNP	NAP1L1	ENST00000261182	human	ensembl	69_37n	-1	known	silent	c.972	p.F324	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109	114	0	0	90	11	10.89	-	-	-	A	76444398	G	A	76444398	2	1	275	1	0	0	0	0	0	0	0	1	10228	1049	37	1		1	NAP1L1	12	76444398	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	568622	76444398	57407497	3507	29194										
BBS10	0	genome.wustl.edu	37	chr12	76740692	76740692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttaggtatttcacactgcGaaaaggcctgtggtggtaca	12	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	76740692	76740692	G	A	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.1073	p.S358L	0.002	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	162	0	0	119	16	11.85	-	-	-	A	76740692	G	A	76740692	3	1	275	1	0	0	0	0	1	0	0	0	1340	1059	37	1	1102	1	BBS10	12	76740692	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	296294	76740692	57111203	3508	29195										
NAV3	0	genome.wustl.edu	37	chr12	78542661	78542661	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagctggttgcatcacaaGaaaaagttgctaccctcaca	9	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	78542661	78542661	G	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	nonsense	c.4747	p.E1583*	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	427	0	0	258	40	13.42	-	-	-	T	78542661	G	T	78542661	4	4	275	1	0	0	0	0	0	1	0	0	10257	943	33	2	4833	2	NAV3	12	78542661	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1801969	78542661	55309234	3509	29196										
PPP1R12A	0	genome.wustl.edu	37	chr12	80187672	80187672	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcttattggatccctcttCtgtgtctgattgttgttctt	7	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	80187672	80187672	C	A	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	nonsense	c.2620	p.E874*	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	363	0	0	186	82	30.6	-	-	-	A	80187672	C	A	80187672	4	1	275	1	0	0	0	0	0	1	0	0	12431	922	32	2	500	2	PPP1R12A	12	80187672	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1645011	80187672	53664223	3510	29197										
MYF6	0	genome.wustl.edu	37	chr12	81102360	81102360	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggccaagtgtttccgatCattccagggggctcgtgata	13	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	81102360	81102360	C	A	SNP	MYF6	ENST00000228641	human	ensembl	69_37n	1	known	missense	c.577	p.H193N	1.000	NULL	pfam_Basic,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF6	HGNC	ENSG00000111046	58	0	0	21	11	34.38	-	-	-	A	81102360	C	A	81102360	3	1	275	1	0	0	0	0	1	0	0	0	10100	826	29	2	583	2	MYF6	12	81102360	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	914688	81102360	52749535	3511	29198										
MYF5	0	genome.wustl.edu	37	chr12	81111216	81111216	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccaaggtggagatcctcaGgaatgccatccgctacatcg	11	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	81111216	81111216	G	T	SNP	MYF5	ENST00000228644	human	ensembl	69_37n	1	known	missense	c.374	p.R125M	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_Basic,pfam_Myf5,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF5	HGNC	ENSG00000111049	65	0	0	33	5	13.16	-	-	-	T	81111216	G	T	81111216	3	4	275	1	0	0	0	0	1	0	0	0	10099	1000	35	4	376	4	MYF5	12	81111216	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8856	81111216	52740679	3512	29199										
ACSS3	0	genome.wustl.edu	37	chr12	81627231	81627231	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttgcaggtcacagaatttCtgcaggcgccattgaagagg	13	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	81627231	81627231	C	A	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.1700	p.S567Y	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	382	0	0	238	106	30.81	-	-	-	A	81627231	C	A	81627231	3	1	275	1	0	0	0	0	1	0	0	0	190	913	32	2	1750	2	ACSS3	12	81627231	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	516015	81627231	52224664	3513	29200										
PPFIA2	0	genome.wustl.edu	37	chr12	81762606	81762606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgataatctcttgttatgCtcctcattcattttctctct	3	12	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	81762606	81762606	C	T	SNP	PPFIA2	ENST00000550359	human	ensembl	69_37n	-1	known	missense	c.1156	p.A386T	0.979	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPFIA2	HGNC	ENSG00000139220	906	0	0	540	181	25.07	-	-	-	T	81762606	C	T	81762606	3	4	275	1	0	0	0	0	1	0	0	0	12383	796	28	4	2473	4	PPFIA2	12	81762606	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	135375	81762606	52089289	3514	29201										
SLC6A15	0	genome.wustl.edu	37	chr12	85285912	85285912	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgggcattggagagtatgcGaagtatttaaaaaaaaaaaa	10	2	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	85285912	85285912	G	A	SNP	SLC6A15	ENST00000551010	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC6A15	HGNC	ENSG00000072041	176	0	0	157	27	14.52	-	-	-	A	85285912	G	A	85285912	1	1	275	0	1	0	0	0	0	0	0	0	14767	1073	37	1		1	SLC6A15	12	85285912	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3523306	85285912	48565983	3515	29202										
LRRIQ1	0	genome.wustl.edu	37	chr12	85459061	85459061	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacaacagttacatttcaaGatttgccaggctgtgttctc	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	85459061	85459061	G	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.2413	p.D805Y	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	449	0	0	316	42	11.73	-	-	-	T	85459061	G	T	85459061	3	4	275	1	0	0	0	0	1	0	0	0	9095	942	33	2	2443	2	LRRIQ1	12	85459061	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	173149	85459061	48392834	3516	29203										
C12orf50	0	genome.wustl.edu	37	chr12	88388501	88388501	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatattggctaagttttgtCggaactgtaagactatctcc	8	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	88388501	88388501	C	T	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	silent	c.501	p.P167	0.999	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	382	0	0	291	38	11.52	-	-	-	T	88388501	C	T	88388501	2	4	275	1	0	0	0	0	0	0	0	1	1707	871	31	1		1	C12orf50	12	88388501	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2929440	88388501	45463394	3517	29204										
CEP290	0	genome.wustl.edu	37	chr12	88502929	88502929	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaagagaatcttctaaattCtttaactttttttctttatt	2	6	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	88502929	88502929	C	A	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.2403	p.K801N	0.980	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	146	0	0	80	19	19.19	-	-	-	A	88502929	C	A	88502929	3	1	275	1	0	0	0	0	1	0	0	0	3282	912	32	2	5170	2	CEP290	12	88502929	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	114428	88502929	45348966	3518	29205										
CEP290	0	genome.wustl.edu	37	chr12	88508925	88508925	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactcctttctaaatctcttTctttttcaattagttctctt	1	10	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	88508925	88508925	T	C	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.1865	p.E622G	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	375	0	0	187	22	10.48	-	-	-	C	88508925	T	C	88508925	3	2	275	1	0	0	0	0	1	0	0	0	3282	1783	62	5	5724	5	CEP290	12	88508925	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	5996	88508925	45342970	3519	29206										
TMTC3	0	genome.wustl.edu	37	chr12	88588926	88588926	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggagacattctgatgaatCaaaagaaagatatactagga	9	4	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	88588926	88588926	C	A	SNP	TMTC3	ENST00000266712	human	ensembl	69_37n	1	known	missense	c.2245	p.Q749K	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	77	0	0	64	9	12.33	-	-	-	A	88588926	C	A	88588926	3	1	275	1	0	0	0	0	1	0	0	0	16357	827	29	2	2295	2	TMTC3	12	88588926	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80001	88588926	45262969	3520	29207										
ATP2B1	0	genome.wustl.edu	37	chr12	89985069	89985069	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgaaatgcattcaccactcGaatctgtaaatatcagaaaa	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	89985069	89985069	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	nonsense	c.3355	p.R1119*	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	107	0	0	97	21	17.65	-	-	-	A	89985069	G	A	89985069	4	1	275	1	0	0	0	0	0	1	0	0	1143	1068	37	1	311	1	ATP2B1	12	89985069	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1396143	89985069	43866826	3521	29208										
ATP2B1	0	genome.wustl.edu	37	chr12	90013815	90013815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcacccttgctgaatattCgataacttccatctgaattt	5	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	90013815	90013815	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.1790	p.R597Q	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	114	0	0	86	19	18.1	-	-	-	T	90013815	C	T	90013815	3	4	275	1	0	0	0	0	1	0	0	0	1143	884	31	1	2074	1	ATP2B1	12	90013815	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28746	90013815	43838080	3522	29209										
ATP2B1	0	genome.wustl.edu	37	chr12	90028639	90028639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctttcatcaattttaagatCgttgccttgaataagtatgc	7	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	90028639	90028639	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.703	p.D235N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	110	0	0	97	22	18.49	-	-	-	T	90028639	C	T	90028639	3	4	275	1	0	0	0	0	1	0	0	0	1143	884	31	1	3185	1	ATP2B1	12	90028639	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14824	90028639	43823256	3523	29210										
EPYC	0	genome.wustl.edu	37	chr12	91358040	91358040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtcctctagtgccttacGaatataagtcaaatttttaa	5	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	91358040	91358040	G	A	SNP	EPYC	ENST00000261172	human	ensembl	69_37n	-1	known	missense	c.862	p.R288C	1.000	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	203	0	0	135	52	27.81	-	-	-	A	91358040	G	A	91358040	3	1	275	1	0	0	0	0	1	0	0	0	5238	1058	37	1	110	1	EPYC	12	91358040	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1329401	91358040	42493855	3524	29211										
KERA	0	genome.wustl.edu	37	chr12	91449646	91449646	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaaacttcttggcaatggaGaaggtacctcctctagctca	8	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	91449646	91449646	G	T	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	missense	c.413	p.S138Y	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	242	0	0	146	18	10.98	-	-	-	T	91449646	G	T	91449646	3	4	275	1	0	0	0	0	1	0	0	0	8196	942	33	2	653	2	KERA	12	91449646	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	91606	91449646	42402249	3525	29212										
KERA	0	genome.wustl.edu	37	chr12	91449844	91449844	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagataaagataccaaattCttgaaggaatagcaggaatt	9	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	91449844	91449844	C	A	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	missense	c.215	p.R72I	1.000	smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	320	0	0	216	27	11.11	-	-	-	A	91449844	C	A	91449844	3	1	275	1	0	0	0	0	1	0	0	0	8196	913	32	2	851	2	KERA	12	91449844	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	198	91449844	42402051	3526	29213										
DCN	0	genome.wustl.edu	37	chr12	91550935	91550935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaagccccattttcaattCctgagctcttcagcggattg	9	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	91550935	91550935	C	T	SNP	DCN	ENST00000052754	human	ensembl	69_37n	-1	known	missense	c.569	p.G190E	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465	276	0	0	186	31	14.22	-	-	-	T	91550935	C	T	91550935	3	4	275	1	0	0	0	0	1	0	0	0	4328	855	30	2	526	2	DCN	12	91550935	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101091	91550935	42300960	3527	29214										
PLXNC1	0	genome.wustl.edu	37	chr12	94620476	94620476	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgacccttctgattatgagaGaaaccaggtaaagtgacatt	9	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	94620476	94620476	G	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	missense	c.1886	p.R629I	0.004	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	281	0	0	194	26	11.82	-	-	-	T	94620476	G	T	94620476	3	4	275	1	0	0	0	0	1	0	0	0	12200	942	33	2	1916	2	PLXNC1	12	94620476	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3069541	94620476	39231419	3528	29215										
TMCC3	0	genome.wustl.edu	37	chr12	94975910	94975910	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaaagagcgatgtatatcCttcaggtggtctttggaaat	10	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	94975910	94975910	C	A	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.483	p.K161N	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	62	0	0	33	10	23.26	-	-	-	A	94975910	C	A	94975910	3	1	275	1	0	0	0	0	1	0	0	0	16089	680	24	4	962	4	TMCC3	12	94975910	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	355434	94975910	38875985	3529	29216										
METAP2	0	genome.wustl.edu	37	chr12	95888734	95888734	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgcttttttgttttagtGaaaagttggaagactgttca	9	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	95888734	95888734	G	T	SNP	METAP2	ENST00000323666	human	ensembl	69_37n	1	known	nonsense	c.592	p.E198*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP2	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	-	no_errors	METAP2	HGNC	ENSG00000111142	452	0	0	297	34	10.27	-	-	-	T	95888734	G	T	95888734	4	4	275	1	0	0	0	0	0	1	0	0	9558	1304	45	2	614	2	METAP2	12	95888734	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	912824	95888734	37963161	3530	29217										
CCDC38	0	genome.wustl.edu	37	chr12	96282244	96282244	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatatactgtactttgatttCtttttctctggagtgcgagt	8	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	96282244	96282244	C	A	SNP	CCDC38	ENST00000344280	human	ensembl	69_37n	-1	known	missense	c.912	p.K304N	0.001	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972	622	0	0	474	53	10.06	-	-	-	A	96282244	C	A	96282244	3	1	275	1	0	0	0	0	1	0	0	0	2836	912	32	2	807	2	CCDC38	12	96282244	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	393510	96282244	37569651	3531	29218										
ELK3	0	genome.wustl.edu	37	chr12	96640916	96640916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagaagcacgagccgcaacGaatacatccactcaggcctg	9	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	96640916	96640916	G	A	SNP	ELK3	ENST00000228741	human	ensembl	69_37n	1	known	missense	c.406	p.E136K	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELK3	HGNC	ENSG00000111145	77	0	0	83	11	11.58	-	-	-	A	96640916	G	A	96640916	3	1	275	1	0	0	0	0	1	0	0	0	5097	1059	37	1	412	1	ELK3	12	96640916	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	358672	96640916	37210979	3532	29219										
TMPO	0	genome.wustl.edu	37	chr12	98925509	98925509	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgaaactgagggaacaagGaacagaatcaagatcttcta	9	6	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	98925509	98925509	G	T	SNP	TMPO	ENST00000266732	human	ensembl	69_37n	1	known	missense	c.458	p.G153V	1.000	superfamily_LEM-like_dom,smart_LEM,pfscan_LEM	pfam_LAP2alpha,pfam_Thymopoietin_LEM,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM,pfscan_Thymopoietin_LEM	-	no_errors	TMPO	HGNC	ENSG00000120802	121	0	0	105	35	25	-	-	-	T	98925509	G	T	98925509	3	4	275	1	0	0	0	0	1	0	0	0	16332	1174	41	2	468	2	TMPO	12	98925509	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2284593	98925509	34926386	3533	29220										
APAF1	0	genome.wustl.edu	37	chr12	99042154	99042154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagatggatgcaaaagctcGaaattgtttgcttcaacata	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	99042154	99042154	G	A	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.17	p.R6Q	1.000	pfam_CARD,superfamily_DEATH-like,pirsf_Apoptotic_pept-activating_1,pfscan_CARD	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	79	0	0	44	16	26.67	-	-	-	A	99042154	G	A	99042154	3	1	275	1	0	0	0	0	1	0	0	0	756	1058	37	1	19	1	APAF1	12	99042154	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	116645	99042154	34809741	3534	29221										
APAF1	0	genome.wustl.edu	37	chr12	99065489	99065489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataatggaatgctttacctGgaatggatgtaagtaggtta	12	3	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	99065489	99065489	G	A	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	silent	c.1785	p.L595	1.000	pirsf_Apoptotic_pept-activating_1	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	213	0	0	151	28	15.56	-	-	-	A	99065489	G	A	99065489	2	1	275	1	0	0	0	0	0	0	0	1	756	1335	47	4		4	APAF1	12	99065489	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23335	99065489	34786406	3535	29222										
APAF1	0	genome.wustl.edu	37	chr12	99076931	99076931	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctctttagatttggaattCtatgactggggaactagtac	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	99076931	99076931	C	A	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.2057	p.S686Y	0.988	superfamily_WD40_repeat_dom,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	346	0	0	171	28	14.07	-	-	-	A	99076931	C	A	99076931	3	1	275	1	0	0	0	0	1	0	0	0	756	913	32	2	2111	2	APAF1	12	99076931	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11442	99076931	34774964	3536	29223										
APAF1	0	genome.wustl.edu	37	chr12	99080547	99080547	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgggatttgaatcaaaaaGaatgtcgaaataccatgttt	8	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	99080547	99080547	G	T	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	nonsense	c.2200	p.E734*	0.764	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	412	1	0.24	213	80	27.3	-	-	-	T	99080547	G	T	99080547	4	4	275	1	0	0	0	0	0	1	0	0	756	943	33	2	2258	2	APAF1	12	99080547	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3616	99080547	34771348	3537	29224										
NR1H4	0	genome.wustl.edu	37	chr12	100930752	100930752	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaattcagtgcagaagaAaattttctcattttgacgga	9	5	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	100930752	100930752	A	T	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	missense	c.888	p.E296D	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	35	0	0	48	6	11.11	-	-	-	T	100930752	A	T	100930752	3	4	275	1	0	0	0	0	1	0	0	0	10692	11	1	5	868	5	NR1H4	12	100930752	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1850205	100930752	32921143	3538	29225										
GAS2L3	0	genome.wustl.edu	37	chr12	101017503	101017503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgaaagtgtacctgattCgcctgccagaacacctcagc	8	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	101017503	101017503	C	T	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	missense	c.920	p.S307L	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	91	0	0	58	16	21.33	-	-	-	T	101017503	C	T	101017503	3	4	275	1	0	0	0	0	1	0	0	0	6298	893	31	1	950	1	GAS2L3	12	101017503	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86751	101017503	32834392	3539	29226										
ANO4	0	genome.wustl.edu	37	chr12	101493480	101493480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaatgcctatggactcttcGatgaatacttagaaatgagt	9	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	101493480	101493480	G	T	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.2131	p.D711Y	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	113	0	0	77	14	15.38	-	-	-	T	101493480	G	T	101493480	3	4	275	1	0	0	0	0	1	0	0	0	698	1058	37	3	2104	3	ANO4	12	101493480	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	475977	101493480	32358415	3540	29227										
ANO4	0	genome.wustl.edu	37	chr12	101505376	101505376	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttgaaggcattggaattCtctctgttatcacaaatgca	7	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	101505376	101505376	C	A	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.2338	p.L780I	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	566	0	0	321	50	13.48	-	-	-	A	101505376	C	A	101505376	3	1	275	1	0	0	0	0	1	0	0	0	698	913	32	2	2319	2	ANO4	12	101505376	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11896	101505376	32346519	3541	29228										
ARL1	0	genome.wustl.edu	37	chr12	101789418	101789418	+	Nonstop_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggagaagaatggactgaaTtactgtctgctttttaatgt	12	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	101789418	101789418	T	G	SNP	ARL1	ENST00000261636	human	ensembl	69_37n	-1	known	nonstop	c.546	p.*182Y	0.581	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL1	HGNC	ENSG00000120805	370	0	0	284	41	12.62	-	-	-	G	101789418	T	G	101789418	4	3	275	1	0	0	0	0	0	0	0	0	927	1500	52	5	3	5	ARL1	12	101789418	Nonstop_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	284042	101789418	32062477	3542	29229										
SPIC	0	genome.wustl.edu	37	chr12	101880208	101880208	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattcagtgggtagataaaAccaaaggcatctttcagttt	9	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	101880208	101880208	A	G	SNP	SPIC	ENST00000299272	human	ensembl	69_37n	1	known	missense	c.406	p.T136A	0.511	pfam_Ets,smart_Ets,pfscan_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPIC	HGNC	ENSG00000166211	157	0	0	125	22	14.86	-	-	-	G	101880208	A	G	101880208	3	3	275	1	0	0	0	0	1	0	0	0	15142	43	2	5	418	5	SPIC	12	101880208	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	90790	101880208	31971687	3543	29230										
MYBPC1	0	genome.wustl.edu	37	chr12	102057262	102057262	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcactgacacgactgtcacGatgaggtggcgccccccaga	12	14	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	102057262	102057262	G	A	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	silent	c.2280	p.T760	0.007	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	449	0	0	277	34	10.9	-	-	-	A	102057262	G	A	102057262	2	1	275	1	0	0	0	0	0	0	0	1	10083	1045	37	1		1	MYBPC1	12	102057262	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	177054	102057262	31794633	3544	29231										
MYBPC1	0	genome.wustl.edu	37	chr12	102067396	102067396	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatcaattgacatccagatCattggtaggtttagatgaag	10	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	102067396	102067396	C	A	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	silent	c.2805	p.I935	0.003	superfamily_Fibronectin_type3,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	97	0	0	76	28	26.92	-	-	-	A	102067396	C	A	102067396	2	1	275	1	0	0	0	0	0	0	0	1	10083	816	29	2		2	MYBPC1	12	102067396	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10134	102067396	31784499	3545	29232										
DRAM1	0	genome.wustl.edu	37	chr12	102301985	102301985	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttagctgtgccagtggttCatgacgggggcgctcttttg	15	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	102301985	102301985	C	A	SNP	DRAM1	ENST00000258534	human	ensembl	69_37n	1	known	missense	c.364	p.H122N	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048	366	0	0	383	57	12.95	-	-	-	A	102301985	C	A	102301985	3	1	275	1	0	0	0	0	1	0	0	0	4788	826	29	2	378	2	DRAM1	12	102301985	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	234589	102301985	31549910	3546	29233										
DRAM1	0	genome.wustl.edu	37	chr12	102302142	102302142	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcgcagctgtcatccccaGtatcctttttcacatttgtg	7	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	102302142	102302142	G	A	SNP	DRAM1	ENST00000258534	human	ensembl	69_37n	1	known	splice_site	c.520+1	e4+1	1.000	-	-	-	no_errors	DRAM1	HGNC	ENSG00000136048	317	1	0.31	364	97	21	-	-	-	A	102302142	G	A	102302142	5	1	275	1	0	0	0	0	0	0	1	0	4788	1043	36	4	535	4	DRAM1	12	102302142	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	157	102302142	31549753	3547	29234										
PMCH	0	genome.wustl.edu	37	chr12	102591424	102591424	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagcctttccccaacctgAatgtattaaataccatgtca	5	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	102591424	102591424	A	C	SNP	PMCH	ENST00000329406	human	ensembl	69_37n	-1	known	missense	c.125	p.F42C	0.379	NULL	pfam_Prepro-melanin_conc_hormone,prints_Prepro-melanin_conc_hormone	-	no_errors	PMCH	HGNC	ENSG00000183395	500	0	0	293	110	27.3	-	-	-	C	102591424	A	C	102591424	3	2	275	1	0	0	0	0	1	0	0	0	12205	246	9	5	384	5	PMCH	12	102591424	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	289282	102591424	31260471	3548	29235										
PAH	0	genome.wustl.edu	37	chr12	103234255	103234255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgggtgtatgggtcgtagCgaactgagaagggccgaggt	18	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	103234255	103234255	C	T	SNP	PAH	ENST00000553106	human	ensembl	69_37n	-1	known	missense	c.1238	p.R413H	0.983	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759	387	1	0.26	283	49	14.71	-	-	-	T	103234255	C	T	103234255	3	4	275	1	0	0	0	0	1	0	0	0	11467	768	27	1	128	1	PAH	12	103234255	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	642831	103234255	30617640	3549	29236										
GLT8D2	0	genome.wustl.edu	37	chr12	104396919	104396919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagacataacttaccgtattCgagtcagagtattccggagt	9	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	104396919	104396919	C	T	SNP	GLT8D2	ENST00000360814	human	ensembl	69_37n	-1	known	missense	c.278	p.R93Q	0.978	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D2	HGNC	ENSG00000120820	292	0	0	297	37	11.04	-	-	-	T	104396919	C	T	104396919	3	4	275	1	0	0	0	0	1	0	0	0	6522	884	31	1	799	1	GLT8D2	12	104396919	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1162664	104396919	29454976	3550	29237										
TXNRD1	0	genome.wustl.edu	37	chr12	104714974	104714974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgctggtattggtttagaCgtcactgttatggttaggtc	12	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	104714974	104714974	C	T	SNP	TXNRD1	ENST00000429002	human	ensembl	69_37n	1	known	silent	c.1095	p.D365	0.972	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	569	0	0	372	53	12.47	-	-	-	T	104714974	C	T	104714974	2	4	275	1	0	0	0	0	0	0	0	1	16904	535	19	1		1	TXNRD1	12	104714974	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	318055	104714974	29136921	3551	29238										
KIAA1033	0	genome.wustl.edu	37	chr12	105504929	105504929	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgccgaagtccaacttaagAattatgggaaatttcttgag	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	105504929	105504929	A	C	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.88	p.N30H	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	149	0	0	60	42	41.18	-	-	-	C	105504929	A	C	105504929	3	2	275	1	0	0	0	0	1	0	0	0	8258	246	9	5	94	5	KIAA1033	12	105504929	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	789955	105504929	28346966	3552	29239										
KIAA1033	0	genome.wustl.edu	37	chr12	105553811	105553811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcctcagtgatcacacacGaaattctgccgaaggcacag	9	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	105553811	105553811	G	A	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.2945	p.R982Q	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	196	0	0	100	35	25.74	-	-	-	A	105553811	G	A	105553811	3	1	275	1	0	0	0	0	1	0	0	0	8258	1058	37	1	3059	1	KIAA1033	12	105553811	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48882	105553811	28298084	3553	29240										
NUAK1	0	genome.wustl.edu	37	chr12	106461162	106461162	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctctgctgggtctttttCaagatgcctttcttgggcat	9	10	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	106461162	106461162	C	A	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.1404	p.L468F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	148	0	0	90	13	12.62	-	-	-	A	106461162	C	A	106461162	3	1	275	1	0	0	0	0	1	0	0	0	10785	825	29	2	585	2	NUAK1	12	106461162	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	907351	106461162	27390733	3554	29241										
RFX4	0	genome.wustl.edu	37	chr12	107048010	107048010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgtttatttccctaggctgGaggagaactatgagattgca	12	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	107048010	107048010	G	A	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.223	p.E75K	1.000	pfam_DNA-bd_RFX	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	317	0	0	195	35	15.15	-	-	-	A	107048010	G	A	107048010	3	1	275	1	0	0	0	0	1	0	0	0	13348	1175	41	2	284	2	RFX4	12	107048010	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	586848	107048010	26803885	3555	29242										
RFX4	0	genome.wustl.edu	37	chr12	107103124	107103124	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagcttaactcaggtgattCgaaagtttgccaagcaactg	9	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	107103124	107103124	C	T	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	nonsense	c.877	p.R293*	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	585	0	0	474	75	13.64	-	-	-	T	107103124	C	T	107103124	4	4	275	1	0	0	0	0	0	1	0	0	13348	876	31	1	1057	1	RFX4	12	107103124	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	55114	107103124	26748771	3556	29243										
PRDM4	0	genome.wustl.edu	37	chr12	108145350	108145350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacagccacaggttctaggCtgaggccaacttcatggagg	13	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	108145350	108145350	C	T	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	missense	c.968	p.S323N	1.000	pirsf_Znf_PRDM4	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	98	0	0	95	44	31.65	-	-	-	T	108145350	C	T	108145350	3	4	275	1	0	0	0	0	1	0	0	0	12540	797	28	4	1469	4	PRDM4	12	108145350	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1042226	108145350	25706545	3557	29244										
SART3	0	genome.wustl.edu	37	chr12	108924988	108924988	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattgtcattaccttcattCtctgctcattgacacgagct	5	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	108924988	108924988	C	A	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.1739	p.R580I	1.000	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	294	0	0	261	60	18.69	-	-	-	A	108924988	C	A	108924988	3	1	275	1	0	0	0	0	1	0	0	0	13934	913	32	2	1176	2	SART3	12	108924988	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	779638	108924988	24926907	3558	29245										
SSH1	0	genome.wustl.edu	37	chr12	109192941	109192941	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggccgagcgactcacgcccAttttgcaatgcaccaggcac	10	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	109192941	109192941	A	G	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	missense	c.1184	p.M395T	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	45	0	0	23	4	14.81	-	-	-	G	109192941	A	G	109192941	3	3	275	1	0	0	0	0	1	0	0	0	15275	217	8	5	2163	5	SSH1	12	109192941	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	267953	109192941	24658954	3559	29246										
ACACB	0	genome.wustl.edu	37	chr12	109577276	109577276	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttttcctggttaaaaatCtgggggaaaatgacggactc	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	109577276	109577276	C	A	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	silent	c.66	p.I22	0.371	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	209	0	0	194	32	14.1	-	-	-	A	109577276	C	A	109577276	2	1	275	1	0	0	0	0	0	0	0	1	107	903	32	2		2	ACACB	12	109577276	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	384335	109577276	24274619	3560	29247										
ACACB	0	genome.wustl.edu	37	chr12	109700240	109700240	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaagtccatgagaaggatCgatccagcttacaagaagct	9	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	109700240	109700240	C	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	silent	c.6753	p.I2251	0.015	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	217	0	0	124	16	11.27	-	-	-	T	109700240	C	T	109700240	2	4	275	1	0	0	0	0	0	0	0	1	107	874	31	1		1	ACACB	12	109700240	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	122964	109700240	24151655	3561	29248										
MYO1H	0	genome.wustl.edu	37	chr12	109834301	109834301	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggcctccaagaaaattCtcgagtattttgcagtgacc	9	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	109834301	109834301	C	T	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.355	p.L119F	0.997	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	150	0	0	134	45	25.14	-	-	-	T	109834301	C	T	109834301	3	4	275	1	0	0	0	0	1	0	0	0	10147	913	32	2	365	2	MYO1H	12	109834301	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134061	109834301	24017594	3562	29249										
MYO1H	0	genome.wustl.edu	37	chr12	109872853	109872853	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacttctagaaccaaaatatTcattcgtttccccagaactc	3	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	109872853	109872853	T	A	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.2057	p.F686Y	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	170	0	0	115	39	25.32	-	-	-	A	109872853	T	A	109872853	3	1	275	1	0	0	0	0	1	0	0	0	10147	1783	62	5	2105	5	MYO1H	12	109872853	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	38552	109872853	23979042	3563	29250										
GIT2	0	genome.wustl.edu	37	chr12	110385283	110385283	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggcctgtttcctgaggttCgaattttcactctggagtgt	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	110385283	110385283	C	T	SNP	GIT2	ENST00000355312	human	ensembl	69_37n	-1	known	silent	c.1419	p.S473	1.000	NULL	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC	ENSG00000139436	177	0	0	149	23	13.22	-	-	-	T	110385283	C	T	110385283	2	4	275	1	0	0	0	0	0	0	0	1	6449	871	31	1		1	GIT2	12	110385283	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	512430	110385283	23466612	3564	29251										
RAD9B	0	genome.wustl.edu	37	chr12	110941660	110941660	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaattagtgacgagttctgGctagacccatctaaaaaagg	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	110941660	110941660	G	A	SNP	RAD9B	ENST00000392672	human	ensembl	69_37n	1	known	nonsense	c.96	p.W32*	1.000	pfam_Rad9,pirsf_Cell_cycle_RAD9	pfam_Rad9,pirsf_Cell_cycle_RAD9	-	no_errors	RAD9B	HGNC	ENSG00000151164	185	0	0	138	20	12.66	-	-	-	A	110941660	G	A	110941660	4	1	275	1	0	0	0	0	0	1	0	0	13079	1212	42	4	102	4	RAD9B	12	110941660	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	556377	110941660	22910235	3565	29252										
PPTC7	0	genome.wustl.edu	37	chr12	110983772	110983772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgctgctgctcatctgatCggtgcacgacttcaccaccc	8	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	110983772	110983772	C	T	SNP	PPTC7	ENST00000354300	human	ensembl	69_37n	-1	known	missense	c.515	p.R172Q	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPTC7	HGNC	ENSG00000196850	198	0	0	120	36	23.08	-	-	-	T	110983772	C	T	110983772	3	4	275	1	0	0	0	0	1	0	0	0	12490	884	31	1	415	1	PPTC7	12	110983772	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42112	110983772	22868123	3566	29253										
CUX2	0	genome.wustl.edu	37	chr12	111652116	111652116	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaaaaatgtacctgaggTatggtatatttgccgttata	9	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	111652116	111652116	T	C	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	splice_site	c.174+2	e2+2	1.000	-	-	-	no_errors	CUX2	HGNC	ENSG00000111249	60	0	0	52	12	18.75	-	-	-	C	111652116	T	C	111652116	5	2	275	1	0	0	0	0	0	0	1	0	4096	1652	57	5	182	5	CUX2	12	111652116	Splice_Site	SNP	T	TCGA-AN-A046-01A-21W-A050-09	668344	111652116	22199779	3567	29254										
BRAP	0	genome.wustl.edu	37	chr12	112096634	112096634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttttacttgcaaccagtCgatgaacatagttatctaca	6	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	112096634	112096634	C	T	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.1127	p.R376Q	1.000	pfam_Znf_UBP,pfscan_Znf_UBP	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	152	0	0	147	33	18.33	-	-	-	T	112096634	C	T	112096634	3	4	275	1	0	0	0	0	1	0	0	0	1505	884	31	1	667	1	BRAP	12	112096634	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	444518	112096634	21755261	3568	29255										
BRAP	0	genome.wustl.edu	37	chr12	112117032	112117032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcatttgttcaattacttCgttaaatggggcaacaaact	6	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	112117032	112117032	C	T	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.556	p.E186K	1.000	pfam_BRAP2	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	153	0	0	117	15	11.28	-	-	-	T	112117032	C	T	112117032	3	4	275	1	0	0	0	0	1	0	0	0	1505	893	31	1	1258	1	BRAP	12	112117032	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20398	112117032	21734863	3569	29256										
ACAD10	0	genome.wustl.edu	37	chr12	112143641	112143641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaggccataactcaaattCgggcaaaaggtcttcagact	9	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	112143641	112143641	C	T	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	missense	c.436	p.R146W	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	354	0	0	409	58	12.39	-	-	-	T	112143641	C	T	112143641	3	4	275	1	0	0	0	0	1	0	0	0	108	875	31	1	446	1	ACAD10	12	112143641	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26609	112143641	21708254	3570	29257										
OAS2	0	genome.wustl.edu	37	chr12	113444335	113444335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtttcacagtcctgcagcGaaacttcattcgctcccggc	8	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	113444335	113444335	G	A	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.1586	p.R529Q	0.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	184	0	0	112	44	28.03	-	-	-	A	113444335	G	A	113444335	3	1	275	1	0	0	0	0	1	0	0	0	10873	1058	37	1	1687	1	OAS2	12	113444335	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1300694	113444335	20407560	3571	29258										
CCDC42B	0	genome.wustl.edu	37	chr12	113593108	113593109	+	Frame_Shift_Del	DEL	CT	CT	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacacagcagcggagaagaCtctgctcctgggacgcagca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	113593108	113593109	CT	-	DEL	CCDC42B	ENST00000335621	human	ensembl	69_37n	1	known	frame_shift_del	c.734_735	p.L246fs	1.000:0.961	NULL	NULL	-	no_errors	CCDC42B	HGNC	ENSG00000186710	62	0	0	27	11	28.95	-	-	-	-	113593109	CT	-	113593108	7	5	275	1	0	1	0	1	0	0	0	0	2841	565	20	0	756	0	CCDC42B	12	113593108	Frame_Shift_Del	DEL	CT	TCGA-AN-A046-01A-21W-A050-09	148773	113593108	20258787	3572	29259										
TBX5	0	genome.wustl.edu	37	chr12	114823290	114823290	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactttcctacctttgcattCttgacattctgtgcagctcc	5	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	114823290	114823290	C	A	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.746	p.R249I	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	345	0	0	323	36	10.03	-	-	-	A	114823290	C	A	114823290	3	1	275	1	0	0	0	0	1	0	0	0	15756	913	32	2	889	2	TBX5	12	114823290	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1230182	114823290	19028605	3573	29260										
TBX3	0	genome.wustl.edu	37	chr12	115109720	115109720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgctggatgctctgcagttCgctggtggccgcctctttct	12	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	115109720	115109720	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.2158	p.E720K	1.000	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	28	0	0	7	10	58.82	-	-	-	T	115109720	C	T	115109720	3	4	275	1	0	0	0	0	1	0	0	0	15754	893	31	1	77	1	TBX3	12	115109720	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	286430	115109720	18742175	3574	29261										
TBX3	0	genome.wustl.edu	37	chr12	115117319	115117319	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgagtttaccttatcattCtggtatgcagtcacagcgat	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	115117319	115117319	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	silent	c.855	p.Q285	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	192	0	0	127	35	21.6	-	-	-	T	115117319	C	T	115117319	2	4	275	1	0	0	0	0	0	0	0	1	15754	912	32	2		2	TBX3	12	115117319	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7599	115117319	18734576	3575	29262										
MED13L	0	genome.wustl.edu	37	chr12	116401285	116401285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcctggcaggcagaagttCgtctgtctgtgctactgaaa	11	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	116401285	116401285	C	T	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.6427	p.E2143K	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	299	1	0.33	163	43	20.77	-	-	-	T	116401285	C	T	116401285	3	4	275	1	0	0	0	0	1	0	0	0	9502	893	31	1	213	1	MED13L	12	116401285	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1283966	116401285	17450610	3576	29263										
RNFT2	0	genome.wustl.edu	37	chr12	117217071	117217071	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggattgtggggatcgcagActttgttctgaagtacatca	12	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	117217071	117217071	A	C	SNP	RNFT2	ENST00000257575	human	ensembl	69_37n	1	known	missense	c.800	p.D267A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT2	HGNC	ENSG00000135119	374	0	0	265	138	34.16	-	-	-	C	117217071	A	C	117217071	3	2	275	1	0	0	0	0	1	0	0	0	13588	275	10	5	822	5	RNFT2	12	117217071	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	815786	117217071	16634824	3577	29264										
NOS1	0	genome.wustl.edu	37	chr12	117681165	117681165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtttctcttccagctgcGatcattgctgatgagggaat	10	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	117681165	117681165	G	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.2899	p.R967C	1.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	765	0	0	719	105	12.73	-	-	-	A	117681165	G	A	117681165	3	1	275	1	0	0	0	0	1	0	0	0	10613	1058	37	1	1449	1	NOS1	12	117681165	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	464094	117681165	16170730	3578	29265										
NOS1	0	genome.wustl.edu	37	chr12	117698325	117698325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcttggcataagcttgcGatttgcctgtctctgtggca	12	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	117698325	117698325	G	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.2312	p.S771L	1.000	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	410	0	0	270	114	29.69	-	-	-	A	117698325	G	A	117698325	3	1	275	1	0	0	0	0	1	0	0	0	10613	1059	37	1	2056	1	NOS1	12	117698325	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17160	117698325	16153570	3579	29266										
CCDC60	0	genome.wustl.edu	37	chr12	119966456	119966456	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtatccagaagttccgtgcTtttgtccttgtctcaaattt	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	119966456	119966456	T	A	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	silent	c.1266	p.A422	0.066	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	343	0	0	290	47	13.95	-	-	-	A	119966456	T	A	119966456	2	1	275	1	0	0	0	0	0	0	0	1	2858	1596	56	5		5	CCDC60	12	119966456	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2268131	119966456	13885439	3580	29267										
PRKAB1	0	genome.wustl.edu	37	chr12	120114410	120114410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaaacccgaagagcgctttCgggcaccccctattctcccc	8	18	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	120114410	120114410	C	T	SNP	PRKAB1	ENST00000229328	human	ensembl	69_37n	1	known	missense	c.601	p.R201W	1.000	pfam_AMP_prot_kin_bsu_interact-dom	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725	255	0	0	183	28	13.21	-	-	-	T	120114410	C	T	120114410	3	4	275	1	0	0	0	0	1	0	0	0	12576	875	31	1	619	1	PRKAB1	12	120114410	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	147954	120114410	13737485	3581	29268										
CIT	0	genome.wustl.edu	37	chr12	120214541	120214541	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagcagcaagccgagactCtctcagctcagattcgtaga	9	12	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	120214541	120214541	C	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.1771	p.E591K	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	218	0	0	99	33	24.81	-	-	-	T	120214541	C	T	120214541	3	4	275	1	0	0	0	0	1	0	0	0	3468	922	32	2	4448	2	CIT	12	120214541	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	100131	120214541	13637354	3582	29269										
PXN	0	genome.wustl.edu	37	chr12	120651738	120651738	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccgccacacttgggtgcGaacatgtcgaagtagtcctt	11	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	120651738	120651738	G	A	SNP	PXN	ENST00000267257	human	ensembl	69_37n	-1	known	silent	c.1458	p.F486	0.646	pfam_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159	59	0	0	22	6	21.43	-	-	-	A	120651738	G	A	120651738	2	1	275	1	0	0	0	0	0	0	0	1	12935	1049	37	1		1	PXN	12	120651738	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	437197	120651738	13200157	3583	29270										
RNF10	0	genome.wustl.edu	37	chr12	121002970	121002970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacctcctgtggtctctaaGgaaaccctagagatgttctc	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	121002970	121002970	G	T	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.1776	p.K592N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	254	0	0	171	64	27.23	-	-	-	T	121002970	G	T	121002970	3	4	275	1	0	0	0	0	1	0	0	0	13508	991	35	4	1803	4	RNF10	12	121002970	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	351232	121002970	12848925	3584	29271										
POP5	0	genome.wustl.edu	37	chr12	121017626	121017626	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtaacggtgtcctttgttCtccaagtatgtgatgaaggg	14	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	121017626	121017626	C	A	SNP	POP5	ENST00000357500	human	ensembl	69_37n	-1	known	missense	c.264	p.E88D	1.000	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	231	0	0	111	35	23.97	-	-	-	A	121017626	C	A	121017626	3	1	275	1	0	0	0	0	1	0	0	0	12327	912	32	2	239	2	POP5	12	121017626	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14656	121017626	12834269	3585	29272										
POP5	0	genome.wustl.edu	37	chr12	121017676	121017676	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacacaagctgatagaattCttttctgcatcgaagtagca	7	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	121017676	121017676	C	A	SNP	POP5	ENST00000357500	human	ensembl	69_37n	-1	known	nonsense	c.214	p.E72*	0.999	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	273	0	0	99	37	27.21	-	-	-	A	121017676	C	A	121017676	4	1	275	1	0	0	0	0	0	1	0	0	12327	922	32	2	289	2	POP5	12	121017676	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50	121017676	12834219	3586	29273										
OASL	0	genome.wustl.edu	37	chr12	121458768	121458768	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggtcctccggattttctCtttaaccttccttatgggct	7	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	121458768	121458768	C	A	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	nonsense	c.1141	p.E381*	0.004	smart_Ubiquitin	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	196	0	0	90	40	30.77	-	-	-	A	121458768	C	A	121458768	4	1	275	1	0	0	0	0	0	1	0	0	10875	922	32	2	407	2	OASL	12	121458768	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	441092	121458768	12393127	3587	29274										
OASL	0	genome.wustl.edu	37	chr12	121458802	121458802	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgggctcataagggttcacGatgaggttgaaatctgggta	14	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	121458802	121458802	G	A	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	silent	c.1107	p.I369	0.673	smart_Ubiquitin	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	138	0	0	95	13	12.04	-	-	-	A	121458802	G	A	121458802	2	1	275	1	0	0	0	0	0	0	0	1	10875	1048	37	1		1	OASL	12	121458802	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34	121458802	12393093	3588	29275										
HPD	0	genome.wustl.edu	37	chr12	122285077	122285077	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccgtgtgcacctgcgtgtCatccacggaccagaagcggt	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	122285077	122285077	C	A	SNP	HPD	ENST00000289004	human	ensembl	69_37n	-1	known	missense	c.640	p.D214Y	1.000	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104	121	0	0	99	16	13.91	-	-	-	A	122285077	C	A	122285077	3	1	275	1	0	0	0	0	1	0	0	0	7383	826	29	2	561	2	HPD	12	122285077	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	826275	122285077	11566818	3589	29276										
LRRC43	0	genome.wustl.edu	37	chr12	122670804	122670804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttggtactgagcgccaatcGaatcaaggaggtggatgcca	14	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	122670804	122670804	G	A	SNP	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	missense	c.479	p.R160Q	0.031	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	327	0	0	181	39	17.73	-	-	-	A	122670804	G	A	122670804	3	1	275	1	0	0	0	0	1	0	0	0	9067	1058	37	1	489	1	LRRC43	12	122670804	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	385727	122670804	11181091	3590	29277										
ZCCHC8	0	genome.wustl.edu	37	chr12	122958760	122958760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggagtggaggagtgtcagGaggtaatggtggttgaaact	20	2	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	122958760	122958760	G	A	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.1408	p.P470S	1.000	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	180	0	0	158	28	15.05	-	-	-	A	122958760	G	A	122958760	3	1	275	1	0	0	0	0	1	0	0	0	17690	1174	41	2	719	2	ZCCHC8	12	122958760	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	287956	122958760	10893135	3591	29278										
ZCCHC8	0	genome.wustl.edu	37	chr12	122983411	122983411	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcaattttcgtttaagttCttgatgttattatttgttaa	6	3	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	122983411	122983411	C	A	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	nonsense	c.205	p.E69*	1.000	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	240	0	0	133	18	11.92	-	-	-	A	122983411	C	A	122983411	4	1	275	1	0	0	0	0	0	1	0	0	17690	922	32	2	1970	2	ZCCHC8	12	122983411	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24651	122983411	10868484	3592	29279										
KNTC1	0	genome.wustl.edu	37	chr12	123060400	123060400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagatgaaaaaacttttacGaggctatggaataagagagg	13	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123060400	123060400	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.2540	p.R847Q	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	147	0	0	99	16	13.91	-	-	-	A	123060400	G	A	123060400	3	1	275	1	0	0	0	0	1	0	0	0	8481	1058	37	1	2650	1	KNTC1	12	123060400	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	76989	123060400	10791495	3593	29280										
KNTC1	0	genome.wustl.edu	37	chr12	123061576	123061576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacctgattgatagagaacaGgtttgtaagttttatgttgt	11	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123061576	123061576	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	silent	c.2721	p.Q907	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	308	1	0.32	198	80	28.78	-	-	-	A	123061576	G	A	123061576	2	1	275	1	0	0	0	0	0	0	0	1	8481	1014	35	4		4	KNTC1	12	123061576	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1176	123061576	10790319	3594	29281										
CCDC62	0	genome.wustl.edu	37	chr12	123276620	123276620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaacgagaagagatcattCgcctcaagcaagagaaaagt	10	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123276620	123276620	C	T	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	missense	c.724	p.R242C	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	245	1	0.41	155	18	10.34	-	-	-	T	123276620	C	T	123276620	3	4	275	1	0	0	0	0	1	0	0	0	2860	884	31	1	746	1	CCDC62	12	123276620	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	215044	123276620	10575275	3595	29282										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123645713	123645713	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttttgtaagttcatcaaaAaatcgttctgtttcagctag	6	7	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123645713	123645713	A	T	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	missense	c.2895	p.F965L	1.000	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	156	0	0	55	30	35.29	-	-	-	T	123645713	A	T	123645713	3	4	275	1	0	0	0	0	1	0	0	0	9800	11	1	5	212	5	MPHOSPH9	12	123645713	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	369093	123645713	10206182	3596	29283										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123686820	123686820	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgattcataataagctcgaaGatctgctatgtgtcgagcat	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123686820	123686820	G	T	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	missense	c.1372	p.L458I	1.000	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	130	0	0	110	14	11.29	-	-	-	T	123686820	G	T	123686820	3	4	275	1	0	0	0	0	1	0	0	0	9800	942	33	2	1779	2	MPHOSPH9	12	123686820	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41107	123686820	10165075	3597	29284										
SBNO1	0	genome.wustl.edu	37	chr12	123813290	123813290	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaaggataccactccatcGaagtcatcaccgcaccaatg	6	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	123813290	123813290	G	A	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	silent	c.1287	p.F429	0.998	pfam_Helicase/UvrB_dom	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	413	0	0	276	101	26.65	-	-	-	A	123813290	G	A	123813290	2	1	275	1	0	0	0	0	0	0	0	1	13949	1049	37	1		1	SBNO1	12	123813290	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	126470	123813290	10038605	3598	29285										
TMED2	0	genome.wustl.edu	37	chr12	124081310	124081310	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgatcccaactcagaattCactgtttaccaaacaccttg	5	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124081310	124081310	C	A	SNP	TMED2	ENST00000536875	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMED2	HGNC	ENSG00000086598	138	0	0	128	17	11.72	-	-	-	A	124081310	C	A	124081310	1	1	275	0	1	0	0	0	0	0	0	0	16099	841	29	2		2	TMED2	12	124081310	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	268020	124081310	9770585	3599	29286										
EIF2B1	0	genome.wustl.edu	37	chr12	124111550	124111550	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatccgcagtttgctctgtaAaattatggctgggcacataa	9	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124111550	124111550	A	C	SNP	EIF2B1	ENST00000537073	human	ensembl	69_37n	-1	putative	missense	c.523	p.L175V	0.000	NULL	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361	109	0	0	52	26	33.33	-	-	-	C	124111550	A	C	124111550	3	2	275	1	0	0	0	0	1	0	0	0	5035	29	1	5		5	EIF2B1	12	124111550	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	30240	124111550	9740345	3600	29287										
ATP6V0A2	0	genome.wustl.edu	37	chr12	124218544	124218544	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggccacaaggttaagaaGatatgtgattggtaagaaaa	11	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124218544	124218544	G	T	SNP	ATP6V0A2	ENST00000330342	human	ensembl	69_37n	1	known	missense	c.720	p.K240N	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344	407	0	0	283	110	27.99	-	-	-	T	124218544	G	T	124218544	3	4	275	1	0	0	0	0	1	0	0	0	1173	933	33	2	746	2	ATP6V0A2	12	124218544	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106994	124218544	9633351	3601	29288										
DNAH10	0	genome.wustl.edu	37	chr12	124265777	124265777	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcacagtattcaattaataCgggatgaatttttaatgaac	6	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124265777	124265777	C	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.589	p.R197	0.814	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	299	0	0	242	36	12.95	-	-	-	A	124265777	C	A	124265777	2	1	275	1	0	0	0	0	0	0	0	1	4634	527	19	3		3	DNAH10	12	124265777	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47233	124265777	9586118	3602	29289										
DNAH10	0	genome.wustl.edu	37	chr12	124319952	124319952	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaccttttgtacatttacaGatttggatgttggttcagag	10	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124319952	124319952	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	splice_site	c.4426-1	e27-1	1.000	-	-	-	no_errors	DNAH10	HGNC	ENSG00000197653	321	0	0	213	35	14.11	-	-	-	T	124319952	G	T	124319952	5	4	275	1	0	0	0	0	0	0	1	0	4634	956	33	2	4531	2	DNAH10	12	124319952	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	54175	124319952	9531943	3603	29290										
DNAH10	0	genome.wustl.edu	37	chr12	124323133	124323133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcaacgactacttagattCgaagagaaatgctttcccaa	6	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124323133	124323133	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.4679	p.S1560L	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	343	0	0	208	30	12.61	-	-	-	T	124323133	C	T	124323133	3	4	275	1	0	0	0	0	1	0	0	0	4634	893	31	1	4789	1	DNAH10	12	124323133	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3181	124323133	9528762	3604	29291										
DNAH10	0	genome.wustl.edu	37	chr12	124352083	124352083	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatggatgtgatagtggaaGgaattgtggatggaagacaa	15	2	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124352083	124352083	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	nonsense	c.6883	p.G2295*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	370	0	0	284	47	14.2	-	-	-	T	124352083	G	T	124352083	4	4	275	1	0	0	0	0	0	1	0	0	4634	1001	35	4	7045	4	DNAH10	12	124352083	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28950	124352083	9499812	3605	29292										
DNAH10	0	genome.wustl.edu	37	chr12	124362406	124362406	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccattacatcttcaaccttCgagatctctcacgggttttt	5	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124362406	124362406	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	nonsense	c.7969	p.R2657*	0.991	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	244	0	0	188	39	17.18	-	-	-	T	124362406	C	T	124362406	4	4	275	1	0	0	0	0	0	1	0	0	4634	876	31	1	8155	1	DNAH10	12	124362406	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10323	124362406	9489489	3606	29293										
DNAH10	0	genome.wustl.edu	37	chr12	124408860	124408860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaagcaaaagaaaaaagCcctgcgcttggttgtctgac	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	124408860	124408860	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.11293	p.P3765S	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	124	0	0	65	41	38.68	-	-	-	T	124408860	C	T	124408860	3	4	275	1	0	0	0	0	1	0	0	0	4634	739	26	4	11555	4	DNAH10	12	124408860	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46454	124408860	9443035	3607	29294										
TMEM132D	0	genome.wustl.edu	37	chr12	129558461	129558461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccatgtagttgtgcagctCtttgcagtccccagggtcca	10	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	129558461	129558461	C	T	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.3259	p.E1087K	0.239	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	331	0	0	305	48	13.56	-	-	-	T	129558461	C	T	129558461	3	4	275	1	0	0	0	0	1	0	0	0	16142	922	32	2	44	2	TMEM132D	12	129558461	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5149601	129558461	4293434	3608	29295										
TMEM132D	0	genome.wustl.edu	37	chr12	129566556	129566556	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccgctcatcatcctcctcCtcttcactgtccccggcagg	6	20	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	129566556	129566556	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.1671	p.E557D	0.041	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	40	0	0	18	9	33.33	-	-	-	A	129566556	C	A	129566556	3	1	275	1	0	0	0	0	1	0	0	0	16142	680	24	4	1640	4	TMEM132D	12	129566556	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8095	129566556	4285339	3609	29296										
FZD10	0	genome.wustl.edu	37	chr12	130648738	130648738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccttcatcctctcgggcttCgtggccctgttccacatccg	8	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	130648738	130648738	C	T	SNP	FZD10	ENST00000539839	human	ensembl	69_37n	1	known	missense	c.1153	p.R385C	1.000	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432	84	0	0	24	8	25	-	-	-	T	130648738	C	T	130648738	3	4	275	1	0	0	0	0	1	0	0	0	6178	883	31	1	1253	1	FZD10	12	130648738	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1082182	130648738	3203157	3610	29297										
GALNT9	0	genome.wustl.edu	37	chr12	132837566	132837566	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactcgacgtgggcatcaaaGaagccgacgactggggcggt	15	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	132837566	132837566	G	A	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	silent	c.729	p.F243	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	42	0	0	13	8	38.1	-	-	-	A	132837566	G	A	132837566	2	1	275	1	0	0	0	0	0	0	0	1	6270	933	33	2		2	GALNT9	12	132837566	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2188828	132837566	1014329	3611	29298										
POLE	0	genome.wustl.edu	37	chr12	133215787	133215787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcagagaggatggcgaccGaagccagcggtagaagtgca	16	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	133215787	133215787	G	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.5509	p.R1837W	1.000	pfam_DNA_pol_e_suA_C	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	231	0	0	193	89	31.12	-	-	-	A	133215787	G	A	133215787	3	1	275	1	0	0	0	0	1	0	0	0	12270	1057	37	1	1424	1	POLE	12	133215787	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	378221	133215787	636108	3612	29299										
POLE	0	genome.wustl.edu	37	chr12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggtctgtctcagcatcaGgaaacttgaggggcagtttg	13	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	133253184	133253184	G	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.890	p.P297R	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	70	0	0	52	19	26.76	-	-	-	C	133253184	G	C	133253184	3	2	275	1	0	0	0	0	1	0	0	0	12270	1000	35	4	6167	4	POLE	12	133253184	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	37397	133253184	598711	3613	29300										
PXMP2	0	genome.wustl.edu	37	chr12	133266897	133266897	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcccagatgattgagaaGaagcggaaaaaagaaaactc	11	7	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	133266897	133266897	G	T	SNP	PXMP2	ENST00000317479	human	ensembl	69_37n	1	known	missense	c.171	p.K57N	0.164	NULL	pfam_Mpv17_PMP22	-	no_errors	PXMP2	HGNC	ENSG00000176894	173	0	0	72	20	21.74	-	-	-	T	133266897	G	T	133266897	3	4	275	1	0	0	0	0	1	0	0	0	12933	933	33	2	177	2	PXMP2	12	133266897	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13713	133266897	584998	3614	29301										
ZNF140	0	genome.wustl.edu	37	chr12	133683077	133683077	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccctcattctacatcagaGaactcatactggagagaaac	6	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	133683077	133683077	G	T	SNP	ZNF140	ENST00000355557	human	ensembl	69_37n	1	known	missense	c.1214	p.R405I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF140	HGNC	ENSG00000196387	215	0	0	137	47	25.54	-	-	-	T	133683077	G	T	133683077	3	4	275	1	0	0	0	0	1	0	0	0	17825	942	33	2	1228	2	ZNF140	12	133683077	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	416180	133683077	168818	3615	29302										
ZNF268	0	genome.wustl.edu	37	chr12	133780671	133780671	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacctaattatacacatgaGaactcattcaggtgaaaaac	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	12	133780671	133780671	G	T	SNP	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	missense	c.2399	p.R800I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	94	0	0	72	27	27	-	-	-	T	133780671	G	T	133780671	3	4	275	1	0	0	0	0	1	0	0	0	17903	942	33	2		2	ZNF268	12	133780671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	97594	133780671	71224	3616	29303										
TPTE2	0	genome.wustl.edu	37	chr13	19997290	19997290	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggattatccaattcatttCttggtagacaaagcctaaga	8	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	19997290	19997290	C	A	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.1481	p.R494I	0.920	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	542	0	0	418	67	13.81	-	-	-	A	19997290	C	A	19997290	3	1	275	1	0	0	0	0	1	0	0	0	16527	913	32	2	91	2	TPTE2	13	19997290	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		19997290	95172588	3617	29304										
TPTE2	0	genome.wustl.edu	37	chr13	20039678	20039678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttatcagaataataagtCgtagaagtcgaactaaatgt	7	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	20039678	20039678	C	T	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.539	p.R180Q	0.014	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	195	0	0	147	47	24.23	-	-	-	T	20039678	C	T	20039678	3	4	275	1	0	0	0	0	1	0	0	0	16527	884	31	1	1081	1	TPTE2	13	20039678	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42388	20039678	95130200	3618	29305										
ZMYM5	0	genome.wustl.edu	37	chr13	20412858	20412858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttttacatattatgcttCgtgtgttttgagtacgttta	7	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	20412858	20412858	C	T	SNP	ZMYM5	ENST00000337963	human	ensembl	69_37n	-1	known	missense	c.854	p.R285Q	0.997	NULL	pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM5	HGNC	ENSG00000132950	288	1	0.35	263	85	24.36	-	-	-	T	20412858	C	T	20412858	3	4	275	1	0	0	0	0	1	0	0	0	17799	884	31	1	1282	1	ZMYM5	13	20412858	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	373180	20412858	94757020	3619	29306										
ZMYM2	0	genome.wustl.edu	37	chr13	20567402	20567402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatgatgttgtttttatcGaacctgtacaacctccccca	6	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	20567402	20567402	G	A	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.190	p.E64K	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	221	0	0	169	53	23.87	-	-	-	A	20567402	G	A	20567402	3	1	275	1	0	0	0	0	1	0	0	0	17796	1059	37	1	192	1	ZMYM2	13	20567402	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154544	20567402	94602476	3620	29307										
ZMYM2	0	genome.wustl.edu	37	chr13	20600786	20600786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaacttgtactggttgccGaacacagtgcaggttttttg	11	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	20600786	20600786	G	A	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.1619	p.R540Q	1.000	pfam_Znf_MYM	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	106	0	0	60	23	27.71	-	-	-	A	20600786	G	A	20600786	3	1	275	1	0	0	0	0	1	0	0	0	17796	1058	37	1	1641	1	ZMYM2	13	20600786	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	33384	20600786	94569092	3621	29308										
GJA3	0	genome.wustl.edu	37	chr13	20716915	20716915	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcggcttcagctcgaagccGtacagaaagtactggccggc	13	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	20716915	20716915	G	A	SNP	GJA3	ENST00000241125	human	ensembl	69_37n	-1	known	silent	c.513	p.Y171	0.868	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743	17	0	0	14	4	22.22	-	-	-	A	20716915	G	A	20716915	2	1	275	1	0	0	0	0	0	0	0	1	6454	1140	40	1		1	GJA3	13	20716915	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	116129	20716915	94452963	3622	29309										
LATS2	0	genome.wustl.edu	37	chr13	21557447	21557447	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaatgtgaccatccagatCtatcaaaatgttatcaggct	6	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	21557447	21557447	C	A	SNP	LATS2	ENST00000382592	human	ensembl	69_37n	-1	known	missense	c.2398	p.D800Y	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	64	0	0	30	11	26.83	-	-	-	A	21557447	C	A	21557447	3	1	275	1	0	0	0	0	1	0	0	0	8701	913	32	2	884	2	LATS2	13	21557447	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	840532	21557447	93612431	3623	29310										
LATS2	0	genome.wustl.edu	37	chr13	21557891	21557891	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taacctgttgtaattagactCtttctggtagaggatcttcc	8	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	21557891	21557891	C	A	SNP	LATS2	ENST00000382592	human	ensembl	69_37n	-1	known	nonsense	c.1954	p.E652*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	83	0	0	54	6	10	-	-	-	A	21557891	C	A	21557891	4	1	275	1	0	0	0	0	0	1	0	0	8701	922	32	2	1328	2	LATS2	13	21557891	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	444	21557891	93611987	3624	29311										
LATS2	0	genome.wustl.edu	37	chr13	21563383	21563383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctggtggtaggacgcaaacGaatcgccggttccttcgaag	14	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	21563383	21563383	G	A	SNP	LATS2	ENST00000382592	human	ensembl	69_37n	-1	known	missense	c.536	p.S179L	0.003	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	36	0	0	22	4	15.38	-	-	-	A	21563383	G	A	21563383	3	1	275	1	0	0	0	0	1	0	0	0	8701	1059	37	1	2750	1	LATS2	13	21563383	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5492	21563383	93606495	3625	29312										
SAP18	0	genome.wustl.edu	37	chr13	21715082	21715082	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggccgccaccaccgaatgGacgagttctcccggggaaat	12	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	21715082	21715082	G	T	SNP	SAP18	ENST00000382533	human	ensembl	69_37n	1	novel	missense	c.187	p.D63Y	1.000	pfam_SAP18	pfam_SAP18	-	no_errors	SAP18	HGNC	ENSG00000150459	105	0	0	60	14	18.67	-	-	-	T	21715082	G	T	21715082	3	4	275	1	0	0	0	0	1	0	0	0	13918	1174	41	2	193	2	SAP18	13	21715082	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	151699	21715082	93454796	3626	29313										
ZDHHC20	0	genome.wustl.edu	37	chr13	21987848	21987848	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgctcttctcaaaatttCttgttgtctttcttggctga	7	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	21987848	21987848	C	A	SNP	ZDHHC20	ENST00000400590	human	ensembl	69_37n	-1	known	nonsense	c.313	p.E105*	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776	601	0	0	408	55	11.88	-	-	-	A	21987848	C	A	21987848	4	1	275	1	0	0	0	0	0	1	0	0	17707	922	32	2	787	2	ZDHHC20	13	21987848	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	272766	21987848	93182030	3627	29314										
EFHA1	0	genome.wustl.edu	37	chr13	22069389	22069389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccaaatcaaagatcttaaAgacagtgtccaaaatattgt	5	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	22069389	22069389	A	C	SNP	EFHA1	ENST00000382374	human	ensembl	69_37n	-1	known	missense	c.1111	p.F371V	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA1	HGNC	ENSG00000165487	269	0	0	144	48	25	-	-	-	C	22069389	A	C	22069389	3	2	275	1	0	0	0	0	1	0	0	0	4978	72	3	5	201	5	EFHA1	13	22069389	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	81541	22069389	93100489	3628	29315										
SACS	0	genome.wustl.edu	37	chr13	23905703	23905703	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagttgctgatttaagagtCattgccaatgctaacaggaa	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23905703	23905703	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.12312	p.M4104I	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	95	0	0	86	11	11.34	-	-	-	A	23905703	C	A	23905703	3	1	275	1	0	0	0	0	1	0	0	0	13890	826	29	2	1431	2	SACS	13	23905703	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1836314	23905703	91264175	3629	29316										
SACS	0	genome.wustl.edu	37	chr13	23907076	23907076	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatggtattaaagatagttCtttcagaaaatttccagata	7	4	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23907076	23907076	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	nonsense	c.10939	p.E3647*	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	65	0	0	61	7	10.29	-	-	-	A	23907076	C	A	23907076	4	1	275	1	0	0	0	0	0	1	0	0	13890	922	32	2	2804	2	SACS	13	23907076	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1373	23907076	91262802	3630	29317										
SACS	0	genome.wustl.edu	37	chr13	23907634	23907634	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaatcacctcatatagttCttttaagtgtattttttctt	3	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23907634	23907634	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	nonsense	c.10381	p.E3461*	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	117	0	0	66	15	18.52	-	-	-	A	23907634	C	A	23907634	4	1	275	1	0	0	0	0	0	1	0	0	13890	922	32	2	3362	2	SACS	13	23907634	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	558	23907634	91262244	3631	29318										
SACS	0	genome.wustl.edu	37	chr13	23908825	23908825	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccaagttgaaaccaatttCtaaaaggagatgtttcagcc	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23908825	23908825	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.9190	p.E3064K	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	125	0	0	91	23	20.18	-	-	-	T	23908825	C	T	23908825	3	4	275	1	0	0	0	0	1	0	0	0	13890	922	32	2	4553	2	SACS	13	23908825	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1191	23908825	91261053	3632	29319										
SACS	0	genome.wustl.edu	37	chr13	23909425	23909425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacagaaggccctatgggGttttttatagttgtgagtaa	11	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23909425	23909425	G	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8590	p.P2864T	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	127	1	0.78	38	22	36.67	-	-	-	T	23909425	G	T	23909425	3	4	275	1	0	0	0	0	1	0	0	0	13890	1261	44	4	5153	4	SACS	13	23909425	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	600	23909425	91260453	3633	29320										
SACS	0	genome.wustl.edu	37	chr13	23913541	23913541	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaatcaagaaactgcattCtgttgcatttgcatcatcag	6	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	23913541	23913541	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	nonsense	c.4474	p.E1492*	1.000	superfamily_ATPase-like_ATP-bd	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	66	0	0	36	9	20	-	-	-	A	23913541	C	A	23913541	4	1	275	1	0	0	0	0	0	1	0	0	13890	922	32	2	9269	2	SACS	13	23913541	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4116	23913541	91256337	3634	29321										
SPATA13	0	genome.wustl.edu	37	chr13	24798934	24798934	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaataaattgacaatgtacGagattcattgagatgacatt	8	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	24798934	24798934	G	A	SNP	SPATA13	ENST00000466831	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA13	HGNC	ENSG00000182957	153	0	0	88	10	10.2	-	-	-	A	24798934	G	A	24798934	1	1	275	0	1	0	0	0	0	0	0	0	15091	1073	37	1		1	SPATA13	13	24798934	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	885393	24798934	90370944	3635	29322										
C1QTNF9	0	genome.wustl.edu	37	chr13	24895186	24895186	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggtgatcaaggctcaagAggatccccaggaaaacatgg	12	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	24895186	24895186	A	C	SNP	C1QTNF9	ENST00000332018	human	ensembl	69_37n	1	known	missense	c.282	p.R94S	0.963	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654	179	0	0	89	39	30.47	-	-	-	C	24895186	A	C	24895186	3	2	275	1	0	0	0	0	1	0	0	0	1989	301	11	5	292	5	C1QTNF9	13	24895186	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	96252	24895186	90274692	3636	29323										
C1QTNF9	0	genome.wustl.edu	37	chr13	24895463	24895463	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaggctggaaaggagatCgaggagagaaagggaaaatc	16	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	24895463	24895463	C	T	SNP	C1QTNF9	ENST00000332018	human	ensembl	69_37n	1	known	nonsense	c.559	p.R187*	0.026	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654	162	0	0	87	48	35.29	-	-	-	T	24895463	C	T	24895463	4	4	275	1	0	0	0	0	0	1	0	0	1989	876	31	1	569	1	C1QTNF9	13	24895463	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	277	24895463	90274415	3637	29324										
PARP4	0	genome.wustl.edu	37	chr13	25077796	25077796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatacctgaggatttaacGaaaaggaaaactttccgcca	8	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25077796	25077796	G	A	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.119	p.S40L	0.486	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	292	0	0	191	38	16.59	-	-	-	A	25077796	G	A	25077796	3	1	275	1	0	0	0	0	1	0	0	0	11536	1059	37	1	5187	1	PARP4	13	25077796	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	182333	25077796	90092082	3638	29325										
PARP4	0	genome.wustl.edu	37	chr13	25077812	25077812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taacgaaaaggaaaactttcCgccattttccttaatgtcag	6	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25077812	25077812	C	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.103	p.G35R	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	308	0	0	213	31	12.7	-	-	-	T	25077812	C	T	25077812	3	4	275	1	0	0	0	0	1	0	0	0	11536	661	23	1	5203	1	PARP4	13	25077812	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16	25077812	90092066	3639	29326										
ATP12A	0	genome.wustl.edu	37	chr13	25264523	25264523	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagaccatcccttcagaGcagctggtggtgggggacat	14	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25264523	25264523	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	silent	c.594	p.E198	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	328	0	0	255	32	11.11	-	-	-	A	25264523	G	A	25264523	2	1	275	1	0	0	0	0	0	0	0	1	1126	962	34	4		4	ATP12A	13	25264523	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186711	25264523	89905355	3640	29327										
RNF17	0	genome.wustl.edu	37	chr13	25370278	25370278	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacatttttatccaggttCtgcagagctagtttttgtaa	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25370278	25370278	C	A	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.1244	p.S415Y	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	267	1	0.37	183	42	18.67	-	-	-	A	25370278	C	A	25370278	3	1	275	1	0	0	0	0	1	0	0	0	13547	913	32	2	1286	2	RNF17	13	25370278	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	105755	25370278	89799600	3641	29328										
PABPC3	0	genome.wustl.edu	37	chr13	25671782	25671782	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgctaacacatcaacacaGacagtgggtccacgtcctgc	9	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25671782	25671782	G	T	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	missense	c.1446	p.Q482H	0.998	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	104	0	0	73	10	12.05	-	-	-	T	25671782	G	T	25671782	3	4	275	1	0	0	0	0	1	0	0	0	11438	933	33	2	1448	2	PABPC3	13	25671782	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	301504	25671782	89498096	3642	29329										
FAM123A	0	genome.wustl.edu	37	chr13	25743846	25743846	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactttggaaaccgggatttTtgttctgggcatctcactcc	9	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	25743846	25743846	T	G	SNP	FAM123A	ENST00000515384	human	ensembl	69_37n	-1	known	missense	c.1912	p.K638Q	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123A	HGNC	ENSG00000165566	189	0	0	87	17	16.35	-	-	-	G	25743846	T	G	25743846	3	3	275	1	0	0	0	0	1	0	0	0	5462	1850	64	5	107	5	FAM123A	13	25743846	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	72064	25743846	89426032	3643	29330										
WASF3	0	genome.wustl.edu	37	chr13	27239234	27239234	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctacatcagagcaaattCtcttcaagacagaattgatc	5	10	4	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	27239234	27239234	C	A	SNP	WASF3	ENST00000335327	human	ensembl	69_37n	1	known	missense	c.203	p.S68Y	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970	334	0	0	217	41	15.89	-	-	-	A	27239234	C	A	27239234	3	1	275	1	0	0	0	0	1	0	0	0	17351	913	32	2	209	2	WASF3	13	27239234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1495388	27239234	87930644	3644	29331										
GPR12	0	genome.wustl.edu	37	chr13	27333170	27333170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaatagagggtgaaaggCatccagcaagcagcaaacgt	13	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	27333170	27333170	C	T	SNP	GPR12	ENST00000381436	human	ensembl	69_37n	-1	known	missense	c.795	p.M265I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975	241	0	0	114	46	28.57	-	-	-	T	27333170	C	T	27333170	3	4	275	1	0	0	0	0	1	0	0	0	6685	710	25	4	213	4	GPR12	13	27333170	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	93936	27333170	87836708	3645	29332										
GPR12	0	genome.wustl.edu	37	chr13	27333613	27333613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagaggcgacaatgaggcCgatcgtgaccagcttggtgg	16	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	27333613	27333613	C	T	SNP	GPR12	ENST00000381436	human	ensembl	69_37n	-1	known	missense	c.352	p.G118S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975	94	0	0	43	7	13.73	-	-	-	T	27333613	C	T	27333613	3	4	275	1	0	0	0	0	1	0	0	0	6685	652	23	1	656	1	GPR12	13	27333613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	443	27333613	87836265	3646	29333										
RASL11A	0	genome.wustl.edu	37	chr13	27845770	27845770	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagcaaactctacttcattCtccaggcaagctgtattcac	5	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	27845770	27845770	C	A	SNP	RASL11A	ENST00000480803	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.058	-	-	-	no_errors	RASL11A	HGNC	ENSG00000122035	107	0	0	46	11	19.3	-	-	-	A	27845770	C	A	27845770	1	1	275	0	1	0	0	0	0	0	0	0	13164	928	32	2		2	RASL11A	13	27845770	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	512157	27845770	87324108	3647	29334										
POMP	0	genome.wustl.edu	37	chr13	29252186	29252186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcagatccatcacaaagcGaagtcatgggagagccacac	9	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	29252186	29252186	G	A	SNP	POMP	ENST00000380842	human	ensembl	69_37n	1	known	missense	c.373	p.E125K	1.000	pfam_UMP1	pfam_UMP1	-	no_errors	POMP	HGNC	ENSG00000132963	456	0	0	277	53	16.01	-	-	-	A	29252186	G	A	29252186	3	1	275	1	0	0	0	0	1	0	0	0	12318	1059	37	1	395	1	POMP	13	29252186	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1406416	29252186	85917692	3648	29335										
SLC46A3	0	genome.wustl.edu	37	chr13	29286981	29286981	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactacccaaagctgatccaTaacctataaaaacttcattc	2	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	29286981	29286981	T	C	SNP	SLC46A3	ENST00000266943	human	ensembl	69_37n	-1	known	missense	c.896	p.Y299C	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508	106	0	0	81	20	19.61	-	-	-	C	29286981	T	C	29286981	3	2	275	1	0	0	0	0	1	0	0	0	14735	1406	49	5	519	5	SLC46A3	13	29286981	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	34795	29286981	85882897	3649	29336										
SLC46A3	0	genome.wustl.edu	37	chr13	29287127	29287127	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtctcttaccagaagcattCttaaaaagcatgtaagttcg	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	29287127	29287127	C	A	SNP	SLC46A3	ENST00000266943	human	ensembl	69_37n	-1	known	missense	c.750	p.K250N	0.989	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508	76	0	0	30	8	21.05	-	-	-	A	29287127	C	A	29287127	3	1	275	1	0	0	0	0	1	0	0	0	14735	912	32	2	665	2	SLC46A3	13	29287127	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	146	29287127	85882751	3650	29337										
SLC46A3	0	genome.wustl.edu	37	chr13	29292007	29292007	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactcagaaatattgctatcAgatgaaaaagtgtagttgcc	8	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	29292007	29292007	A	C	SNP	SLC46A3	ENST00000266943	human	ensembl	69_37n	-1	known	silent	c.129	p.S43	0.000	pfam_MFS	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508	226	0	0	88	35	28.23	-	-	-	C	29292007	A	C	29292007	2	2	275	1	0	0	0	0	0	0	0	1	14735	175	7	5		5	SLC46A3	13	29292007	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	4880	29292007	85877871	3651	29338										
USPL1	0	genome.wustl.edu	37	chr13	31205015	31205015	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcacttaataacctaatttCtcctgatttggaagaatgtc	5	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	31205015	31205015	C	A	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.272	p.S91Y	0.965	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	120	0	0	67	8	10.67	-	-	-	A	31205015	C	A	31205015	3	1	275	1	0	0	0	0	1	0	0	0	17189	913	32	2	282	2	USPL1	13	31205015	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1913008	31205015	83964863	3652	29339										
USPL1	0	genome.wustl.edu	37	chr13	31233466	31233466	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattagacctacctcatttCgatgaatatctgtttgagaa	6	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	31233466	31233466	C	T	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	silent	c.3252	p.F1084	0.989	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	84	0	0	54	22	28.95	-	-	-	T	31233466	C	T	31233466	2	4	275	1	0	0	0	0	0	0	0	1	17189	883	31	1		1	USPL1	13	31233466	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28451	31233466	83936412	3653	29340										
C13orf33	0	genome.wustl.edu	37	chr13	31495811	31495811	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgcattatttgatttcttCtattggtttgggctcagtaa	9	5	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	31495811	31495811	C	A	SNP	C13orf33	ENST00000380482	human	ensembl	69_37n	1	known	missense	c.615	p.F205L	1.000	NULL	NULL	-	no_errors	C13orf33	HGNC	ENSG00000102802	474	0	0	378	43	10.21	-	-	-	A	31495811	C	A	31495811	3	1	275	1	0	0	0	0	1	0	0	0	1739	912	32	2	629	2	C13orf33	13	31495811	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	262345	31495811	83674067	3654	29341										
HSPH1	0	genome.wustl.edu	37	chr13	31724157	31724157	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctaatatcttttccaaaGaatttggcaattctttcctt	5	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	31724157	31724157	G	T	SNP	HSPH1	ENST00000445273	human	ensembl	69_37n	-1	known	missense	c.1077	p.F359L	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694	189	0	0	146	25	14.62	-	-	-	T	31724157	G	T	31724157	3	4	275	1	0	0	0	0	1	0	0	0	7485	933	33	2	1549	2	HSPH1	13	31724157	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	228346	31724157	83445721	3655	29342										
RXFP2	0	genome.wustl.edu	37	chr13	32360537	32360537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggatctgtctagcaataCgataacggaactatcacctc	8	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	32360537	32360537	C	T	SNP	RXFP2	ENST00000298386	human	ensembl	69_37n	1	known	missense	c.947	p.T316M	0.882	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP2	HGNC	ENSG00000133105	276	0	0	183	37	16.82	-	-	-	T	32360537	C	T	32360537	3	4	275	1	0	0	0	0	1	0	0	0	13846	536	19	1	993	1	RXFP2	13	32360537	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	636380	32360537	82809341	3656	29343										
FRY	0	genome.wustl.edu	37	chr13	32723920	32723920	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaatgaaagaaatcattttCgattttctttgtgtgggaaa	9	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	32723920	32723920	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	silent	c.1428	p.F476	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	358	1	0.28	204	37	15.35	-	-	-	T	32723920	C	T	32723920	2	4	275	1	0	0	0	0	0	0	0	1	6112	883	31	1		1	FRY	13	32723920	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	363383	32723920	82445958	3657	29344										
BRCA2	0	genome.wustl.edu	37	chr13	32972674	32972674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagtaattcaatagctgacGaagaacttgcattgataaat	7	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	32972674	32972674	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.10024	p.E3342K	1.000	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	165	0	0	98	19	16.24	-	-	-	A	32972674	G	A	32972674	3	1	275	1	0	0	0	0	1	0	0	0	1507	1059	37	1	10126	1	BRCA2	13	32972674	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248754	32972674	82197204	3658	29345										
N4BP2L2	0	genome.wustl.edu	37	chr13	33110066	33110066	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcatctttctctgacttCacagaaaccattactcacat	3	14	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	33110066	33110066	C	A	SNP	N4BP2L2	ENST00000267068	human	ensembl	69_37n	-1	known	nonsense	c.1099	p.E367*	1.000	NULL	pfam_Zeta_toxin_domain	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	113	0	0	80	13	13.98	-	-	-	A	33110066	C	A	33110066	4	1	275	1	0	0	0	0	0	1	0	0	10184	835	29	2	2533	2	N4BP2L2	13	33110066	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	137392	33110066	82059812	3659	29346										
PDS5B	0	genome.wustl.edu	37	chr13	33275529	33275529	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctggaaatgatcaagtttCtcttggagaggatagcacct	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	33275529	33275529	C	A	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.1810	p.L604I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	182	0	0	125	22	14.97	-	-	-	A	33275529	C	A	33275529	3	1	275	1	0	0	0	0	1	0	0	0	11765	913	32	2	1872	2	PDS5B	13	33275529	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165463	33275529	81894349	3660	29347										
KL	0	genome.wustl.edu	37	chr13	33638180	33638180	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaaagattttgtccagaaGaattcaccgtgtgtactgag	11	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	33638180	33638180	G	T	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	nonsense	c.2896	p.E966*	0.894	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	270	1	0.37	136	52	27.66	-	-	-	T	33638180	G	T	33638180	4	4	275	1	0	0	0	0	0	1	0	0	8384	943	33	2	2914	2	KL	13	33638180	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	362651	33638180	81531698	3661	29348										
NBEA	0	genome.wustl.edu	37	chr13	35733695	35733695	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaaggataatggtccattGataacattagcagatgagaa	10	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	35733695	35733695	G	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.3387	p.L1129F	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	254	0	0	148	50	25.13	-	-	-	T	35733695	G	T	35733695	3	4	275	1	0	0	0	0	1	0	0	0	10259	1281	45	2	3473	2	NBEA	13	35733695	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2095515	35733695	79436183	3662	29349										
DCLK1	0	genome.wustl.edu	37	chr13	36402431	36402431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gataattttcagagcatactCtctagcagtcgatctgcgaa	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	36402431	36402431	C	T	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	missense	c.1243	p.E415K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	126	0	0	86	12	12.12	-	-	-	T	36402431	C	T	36402431	3	4	275	1	0	0	0	0	1	0	0	0	4322	922	32	2	986	2	DCLK1	13	36402431	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	668736	36402431	78767447	3663	29350										
SPG20	0	genome.wustl.edu	37	chr13	36888569	36888569	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggaagcacctttttaaaaGaaaatttaaaattgcacaat	5	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	36888569	36888569	G	T	SNP	SPG20	ENST00000482146	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.280	-	-	-	no_errors	SPG20	HGNC	ENSG00000133104	207	0	0	123	44	26.35	-	-	-	T	36888569	G	T	36888569	1	4	275	0	1	0	0	0	0	0	0	0	15133	957	33	2		2	SPG20	13	36888569	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	486138	36888569	78281309	3664	29351										
CSNK1A1L	0	genome.wustl.edu	37	chr13	37678473	37678473	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccactggaagaggctgcctgCtgtgctgctttctgctttaa	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	37678473	37678473	C	T	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	silent	c.921	p.Q307	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	433	0	0	283	58	16.96	-	-	-	T	37678473	C	T	37678473	2	4	275	1	0	0	0	0	0	0	0	1	3983	796	28	4		4	CSNK1A1L	13	37678473	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	789904	37678473	77491405	3665	29352										
CSNK1A1L	0	genome.wustl.edu	37	chr13	37678550	37678550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggtcctgaaaagaatgcGgaatagctgcctcagataca	11	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	37678550	37678550	G	A	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	missense	c.844	p.R282C	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	365	0	0	203	78	27.76	-	-	-	A	37678550	G	A	37678550	3	1	275	1	0	0	0	0	1	0	0	0	3983	1116	39	1	173	1	CSNK1A1L	13	37678550	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77	37678550	77491328	3666	29353										
TRPC4	0	genome.wustl.edu	37	chr13	38211624	38211624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtccttgctattaccttCgctatcactcttttcatctg	4	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	38211624	38211624	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.2365	p.E789K	0.968	prints_TRPC4_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	92	0	0	55	19	25.68	-	-	-	T	38211624	C	T	38211624	3	4	275	1	0	0	0	0	1	0	0	0	16676	893	31	1	587	1	TRPC4	13	38211624	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	533074	38211624	76958254	3667	29354										
FREM2	0	genome.wustl.edu	37	chr13	39454503	39454503	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatcgaggtattggcaaaaGaagtgtggagtaccattctc	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	39454503	39454503	G	T	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.9089	p.R3030I	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	143	0	0	76	13	14.61	-	-	-	T	39454503	G	T	39454503	3	4	275	1	0	0	0	0	1	0	0	0	6094	942	33	2	9183	2	FREM2	13	39454503	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1242879	39454503	75715375	3668	29355										
FOXO1	0	genome.wustl.edu	37	chr13	41134681	41134681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactagcatttgagctagttCgagggcgaaatgtactccag	11	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41134681	41134681	C	T	SNP	FOXO1	ENST00000379561	human	ensembl	69_37n	-1	known	missense	c.947	p.R316Q	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907	125	0	0	80	42	34.43	-	-	-	T	41134681	C	T	41134681	3	4	275	1	0	0	0	0	1	0	0	0	6071	884	31	1	1024	1	FOXO1	13	41134681	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1680178	41134681	74035197	3669	29356										
FOXO1	0	genome.wustl.edu	37	chr13	41134750	41134750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagggcttgcaggccatttgGaaaactgtgatccagggctg	14	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41134750	41134750	G	T	SNP	FOXO1	ENST00000379561	human	ensembl	69_37n	-1	known	missense	c.878	p.S293Y	0.992	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907	108	0	0	82	12	12.77	-	-	-	T	41134750	G	T	41134750	3	4	275	1	0	0	0	0	1	0	0	0	6071	1174	41	2	1093	2	FOXO1	13	41134750	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69	41134750	74035128	3670	29357										
WBP4	0	genome.wustl.edu	37	chr13	41656950	41656950	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaagaaaaaacagtcacttCtcttggagttatggcagatg	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41656950	41656950	C	A	SNP	WBP4	ENST00000379487	human	ensembl	69_37n	1	known	missense	c.1031	p.S344Y	0.999	NULL	pfam_WW_Rsp5_WWP,pfam_Znf_U1-C,superfamily_WW_Rsp5_WWP,smart_Znf_U1,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688	190	0	0	95	34	26.36	-	-	-	A	41656950	C	A	41656950	3	1	275	1	0	0	0	0	1	0	0	0	17358	913	32	2	1069	2	WBP4	13	41656950	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	522200	41656950	73512928	3671	29358										
KBTBD6	0	genome.wustl.edu	37	chr13	41705201	41705201	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagcatagagatagtctcGaattaccattaggtcaaagg	11	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41705201	41705201	G	A	SNP	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	nonsense	c.1447	p.R483*	0.995	smart_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	134	0	0	61	17	21.79	-	-	-	A	41705201	G	A	41705201	4	1	275	1	0	0	0	0	0	1	0	0	8051	1066	37	1	581	1	KBTBD6	13	41705201	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	48251	41705201	73464677	3672	29359										
KBTBD6	0	genome.wustl.edu	37	chr13	41705266	41705266	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaccaatgcccactggtttCtcttaacattgtagcattcc	5	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41705266	41705266	C	A	SNP	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	missense	c.1382	p.R461I	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	188	0	0	82	17	17.17	-	-	-	A	41705266	C	A	41705266	3	1	275	1	0	0	0	0	1	0	0	0	8051	913	32	2	646	2	KBTBD6	13	41705266	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	65	41705266	73464612	3673	29360										
KBTBD7	0	genome.wustl.edu	37	chr13	41767845	41767845	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcgaagcttgtgatggtcGaaggcgtctgcaaacttgag	14	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41767845	41767845	G	A	SNP	KBTBD7	ENST00000379483	human	ensembl	69_37n	-1	known	silent	c.549	p.F183	0.971	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD7	HGNC	ENSG00000120696	129	0	0	71	14	16.47	-	-	-	A	41767845	G	A	41767845	2	1	275	1	0	0	0	0	0	0	0	1	8052	1049	37	1		1	KBTBD7	13	41767845	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	62579	41767845	73402033	3674	29361										
NAA16	0	genome.wustl.edu	37	chr13	41899887	41899887	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaattgatattataccagaaTcaagtgatgagagaggcaga	11	4	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	41899887	41899887	T	C	SNP	NAA16	ENST00000379406	human	ensembl	69_37n	1	known	silent	c.591	p.N197	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR-1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766	175	0	0	122	34	21.79	-	-	-	C	41899887	T	C	41899887	2	2	275	1	0	0	0	0	0	0	0	1	10191	1432	50	5		5	NAA16	13	41899887	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	132042	41899887	73269991	3675	29362										
AKAP11	0	genome.wustl.edu	37	chr13	42874233	42874233	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggtttatttagtcctattCgatcctctgcttttagtcct	7	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	42874233	42874233	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	nonsense	c.1351	p.R451*	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	189	0	0	116	60	34.09	-	-	-	T	42874233	C	T	42874233	4	4	275	1	0	0	0	0	0	1	0	0	447	876	31	1	1373	1	AKAP11	13	42874233	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	974346	42874233	72295645	3676	29363										
COG3	0	genome.wustl.edu	37	chr13	46083908	46083908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtggtatcctacggttcGaagaactcttgtctgtctct	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46083908	46083908	G	A	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	missense	c.1676	p.R559Q	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	321	0	0	154	94	37.9	-	-	-	A	46083908	G	A	46083908	3	1	275	1	0	0	0	0	1	0	0	0	3689	1058	37	1	1734	1	COG3	13	46083908	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3209675	46083908	69085970	3677	29364										
SIAH3	0	genome.wustl.edu	37	chr13	46357806	46357806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtgcccttcatgcctctcCtgtttcctcagcaccaacag	8	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46357806	46357806	C	A	SNP	SIAH3	ENST00000400405	human	ensembl	69_37n	-1	known	missense	c.522	p.Q174H	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475	202	0	0	72	35	32.41	-	-	-	A	46357806	C	A	46357806	3	1	275	1	0	0	0	0	1	0	0	0	14390	680	24	4	291	4	SIAH3	13	46357806	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	273898	46357806	68812072	3678	29365										
ZC3H13	0	genome.wustl.edu	37	chr13	46541951	46541951	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgttctcgcaatctatctcGatccctgttgcgtggccaat	8	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46541951	46541951	G	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	nonsense	c.4009	p.R1337*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	1059	0	0	654	261	28.4	-	-	-	A	46541951	G	A	46541951	4	1	275	1	0	0	0	0	0	1	0	0	17661	1066	37	1	697	1	ZC3H13	13	46541951	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184145	46541951	68627927	3679	29366			1	57		6	6	2151	N	T_G_C	4.013503e-05
ZC3H13	0	genome.wustl.edu	37	chr13	46543420	46543420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtactaccaggagtcgtggCggtggcagtatgctctgctt	15	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46543420	46543420	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.3259	p.A1087T	0.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	362	1	0.28	245	55	18.09	-	-	-	T	46543420	C	T	46543420	3	4	275	1	0	0	0	0	1	0	0	0	17661	768	27	1	1451	1	ZC3H13	13	46543420	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1469	46543420	68626458	3680	29367			1	57		6	6	2151	N	T_G_C	4.013503e-05
ZC3H13	0	genome.wustl.edu	37	chr13	46543501	46543501	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcactgaatgctgtatcttCttttttctgggagtcctcta	8	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46543501	46543501	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	nonsense	c.3178	p.E1060*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	383	0	0	271	47	14.73	-	-	-	A	46543501	C	A	46543501	4	1	275	1	0	0	0	0	0	1	0	0	17661	922	32	2	1532	2	ZC3H13	13	46543501	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	81	46543501	68626377	3681	29368			1	57		6	6	2151	N	T_G_C	4.013503e-05
ZC3H13	0	genome.wustl.edu	37	chr13	46543638	46543638	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcttcatcagaaatatcaGaatcacctttggatttttta	4	8	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46543638	46543638	G	T	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.3041	p.S1014Y	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	410	0	0	304	66	17.84	-	-	-	T	46543638	G	T	46543638	3	4	275	1	0	0	0	0	1	0	0	0	17661	942	33	2	1669	2	ZC3H13	13	46543638	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	137	46543638	68626240	3682	29369			1	57		6	6	2151	N	T_G_C	4.013503e-05
ZC3H13	0	genome.wustl.edu	37	chr13	46543915	46543915	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccaggatttctgtctgttCtctctgtttatctacagaag	7	9	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46543915	46543915	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	nonsense	c.2764	p.E922*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	810	0	0	454	199	30.47	-	-	-	A	46543915	C	A	46543915	4	1	275	1	0	0	0	0	0	1	0	0	17661	922	32	2	1946	2	ZC3H13	13	46543915	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	277	46543915	68625963	3683	29370			1	57		6	6	2151	N	T_G_C	4.013503e-05
ZC3H13	0	genome.wustl.edu	37	chr13	46544101	46544101	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggctcaagagtctgtgttTttcatctatataaaagataa	7	5	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	46544101	46544101	T	G	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.2578	p.K860Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	528	0	0	400	74	15.61	-	-	-	G	46544101	T	G	46544101	3	3	275	1	0	0	0	0	1	0	0	0	17661	1850	64	5	2132	5	ZC3H13	13	46544101	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	186	46544101	68625777	3684	29371			1	57		6	6	2151	N	T_G_C	4.013503e-05
LRCH1	0	genome.wustl.edu	37	chr13	47297460	47297460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagagctggtggaacaacttCgtgaggtacccaagaaatat	11	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	47297460	47297460	C	T	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.1759	p.R587C	0.998	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	215	0	0	136	45	24.86	-	-	-	T	47297460	C	T	47297460	3	4	275	1	0	0	0	0	1	0	0	0	8998	884	31	1	1930	1	LRCH1	13	47297460	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	753359	47297460	67872418	3685	29372										
RB1	0	genome.wustl.edu	37	chr13	48939108	48939108	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctaatggacttccagagGtaatctgaaaggaaatttaa	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	48939108	48939108	G	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	splice_site	c.939+1	e9+1	1.000	-	-	-	no_errors	RB1	HGNC	ENSG00000139687	123	0	0	59	25	29.76	-	-	-	A	48939108	G	A	48939108	5	1	275	1	0	0	0	0	0	0	1	0	13181	1275	44	4	974	4	RB1	13	48939108	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1641648	48939108	66230770	3686	29373										
RCBTB2	0	genome.wustl.edu	37	chr13	49073879	49073879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcgttatcttccaatgacGaacgaaaatgctcacatctg	6	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	49073879	49073879	G	A	SNP	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	missense	c.1277	p.S426L	0.969	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	193	0	0	156	20	11.36	-	-	-	A	49073879	G	A	49073879	3	1	275	1	0	0	0	0	1	0	0	0	13255	1059	37	1	405	1	RCBTB2	13	49073879	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	134771	49073879	66095999	3687	29374										
RCBTB2	0	genome.wustl.edu	37	chr13	49089765	49089765	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacttcattgccagcactgCcaaagacacaagcctgacga	7	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	49089765	49089765	C	A	SNP	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	missense	c.170	p.G57V	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	88	0	0	80	9	10.11	-	-	-	A	49089765	C	A	49089765	3	1	275	1	0	0	0	0	1	0	0	0	13255	739	26	4	1544	4	RCBTB2	13	49089765	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15886	49089765	66080113	3688	29375										
FNDC3A	0	genome.wustl.edu	37	chr13	49710545	49710545	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaacgtttgcagaaaaaaTtgaaggatcgccaaggaaca	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	49710545	49710545	T	G	SNP	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	missense	c.568	p.L190V	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	206	0	0	104	55	34.59	-	-	-	G	49710545	T	G	49710545	3	3	275	1	0	0	0	0	1	0	0	0	6015	1490	52	5	597	5	FNDC3A	13	49710545	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	620780	49710545	65459333	3689	29376										
FNDC3A	0	genome.wustl.edu	37	chr13	49749515	49749515	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaacagtggttttagtgaAgaagtcttatattacacctc	7	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	49749515	49749515	A	G	SNP	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	silent	c.1368	p.E456	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	123	0	0	56	19	25.33	-	-	-	G	49749515	A	G	49749515	2	3	275	1	0	0	0	0	0	0	0	1	6015	69	3	5		5	FNDC3A	13	49749515	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	38970	49749515	65420363	3690	29377										
TRIM13	0	genome.wustl.edu	37	chr13	50586098	50586098	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagctgcttgaagaagatCtcacatgccctatttgttgt	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	50586098	50586098	C	T	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	missense	c.31	p.L11F	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	87	0	0	61	18	22.5	-	-	-	T	50586098	C	T	50586098	3	4	275	1	0	0	0	0	1	0	0	0	16584	913	32	2	37	2	TRIM13	13	50586098	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	836583	50586098	64583780	3691	29378										
TRIM13	0	genome.wustl.edu	37	chr13	50586521	50586521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgagtccctcttccagagcTttgagacctggcgtcgggga	13	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	50586521	50586521	T	C	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	missense	c.454	p.F152L	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	83	0	0	81	14	14.74	-	-	-	C	50586521	T	C	50586521	3	2	275	1	0	0	0	0	1	0	0	0	16584	1609	56	5	460	5	TRIM13	13	50586521	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	423	50586521	64583357	3692	29379										
TRIM13	0	genome.wustl.edu	37	chr13	50586630	50586630	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagataaagtgaaggaatTttttgagaagttacaacaca	8	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	50586630	50586630	T	G	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	missense	c.563	p.F188C	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	88	0	0	71	15	17.44	-	-	-	G	50586630	T	G	50586630	3	3	275	1	0	0	0	0	1	0	0	0	16584	1841	64	5	569	5	TRIM13	13	50586630	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	109	50586630	64583248	3693	29380										
INTS6	0	genome.wustl.edu	37	chr13	51957492	51957492	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaagaaggactggataatTgtaaggcatcacaaataagt	12	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	51957492	51957492	T	C	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1153	p.N385D	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	495	1	0.2	313	40	11.3	-	-	-	C	51957492	T	C	51957492	3	2	275	1	0	0	0	0	1	0	0	0	7836	1812	63	5	1550	5	INTS6	13	51957492	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1370862	51957492	63212386	3694	29381										
INTS6	0	genome.wustl.edu	37	chr13	51969529	51969529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacatggtgccaggcaaccGcaacactaatgcaaagagtc	10	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	51969529	51969529	G	A	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.520	p.R174W	1.000	pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	177	0	0	119	22	15.6	-	-	-	A	51969529	G	A	51969529	3	1	275	1	0	0	0	0	1	0	0	0	7836	1086	38	1	2199	1	INTS6	13	51969529	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12037	51969529	63200349	3695	29382										
NEK5	0	genome.wustl.edu	37	chr13	52661578	52661578	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaatttggctcggcagaagAtggacgaagaccctatttat	11	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	52661578	52661578	A	G	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.1288	p.S430P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	203	0	0	139	19	12.03	-	-	-	G	52661578	A	G	52661578	3	3	275	1	0	0	0	0	1	0	0	0	10399	333	12	5	870	5	NEK5	13	52661578	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	692049	52661578	62508300	3696	29383										
SUGT1	0	genome.wustl.edu	37	chr13	53254191	53254191	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatcaaagaagaagaaaaGaatgaaaagttggagggaga	14	1	1	7			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	53254191	53254191	G	T	SNP	SUGT1	ENST00000343788	human	ensembl	69_37n	1	known	missense	c.897	p.K299N	1.000	pfam_SGS,superfamily_HSP20-like_chaperone,pfscan_SGS	pfam_SGS,pfam_CS_domain,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS-like_domain,pfscan_SGS,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SUGT1	HGNC	ENSG00000165416	273	0	0	216	28	11.48	-	-	-	T	53254191	G	T	53254191	3	4	275	1	0	0	0	0	1	0	0	0	15460	933	33	2	947	2	SUGT1	13	53254191	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	592613	53254191	61915687	3697	29384										
PCDH17	0	genome.wustl.edu	37	chr13	58207092	58207092	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttctcctcggaccagatcGaaatggacatctcggagaac	9	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	58207092	58207092	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	missense	c.412	p.E138K	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	55	0	0	35	9	20.45	-	-	-	A	58207092	G	A	58207092	3	1	275	1	0	0	0	0	1	0	0	0	11585	1059	37	1	414	1	PCDH17	13	58207092	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4952901	58207092	56962786	3698	29385										
DIAPH3	0	genome.wustl.edu	37	chr13	60453488	60453488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgctcttctttatctcttCgcaggcagtactgacagcca	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	60453488	60453488	C	T	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	missense	c.2482	p.E828K	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	165	0	0	89	16	15.24	-	-	-	T	60453488	C	T	60453488	3	4	275	1	0	0	0	0	1	0	0	0	4556	893	31	1	1151	1	DIAPH3	13	60453488	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2246396	60453488	54716390	3699	29386										
PCDH9	0	genome.wustl.edu	37	chr13	67802412	67802412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcgctggtccctgtggcaGcattgatgtgagaaatgttc	14	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	67802412	67802412	G	A	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.161	p.A54V	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	147	0	0	72	24	25	-	-	-	A	67802412	G	A	67802412	3	1	275	1	0	0	0	0	1	0	0	0	11591	971	34	4	3568	4	PCDH9	13	67802412	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7348924	67802412	47367466	3700	29387										
KLHL1	0	genome.wustl.edu	37	chr13	70549770	70549770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctatgtgcaggtatctttCggttcccaacaatcaggata	8	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	70549770	70549770	C	T	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.662	p.R221Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	169	0	0	112	18	13.85	-	-	-	T	70549770	C	T	70549770	3	4	275	1	0	0	0	0	1	0	0	0	8418	884	31	1	1624	1	KLHL1	13	70549770	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2747358	70549770	44620108	3701	29388										
DACH1	0	genome.wustl.edu	37	chr13	72133957	72133957	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtatgagacctacggattCtgtcagaagagctctcagtc	10	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	72133957	72133957	C	A	SNP	DACH1	ENST00000359684	human	ensembl	69_37n	-1	known	missense	c.1592	p.R531I	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	146	0	0	75	38	33.63	-	-	-	A	72133957	C	A	72133957	3	1	275	1	0	0	0	0	1	0	0	0	4252	913	32	2	718	2	DACH1	13	72133957	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1584187	72133957	43035921	3702	29389										
DIS3	0	genome.wustl.edu	37	chr13	73337650	73337650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggtggagcaggatgttttCgaagcagagcatgttcagaa	15	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	73337650	73337650	C	T	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	missense	c.2066	p.R689Q	1.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	176	0	0	56	9	13.64	-	-	-	T	73337650	C	T	73337650	3	4	275	1	0	0	0	0	1	0	0	0	4571	884	31	1	834	1	DIS3	13	73337650	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1203693	73337650	41832228	3703	29390										
PIBF1	0	genome.wustl.edu	37	chr13	73402021	73402021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaaagcaaaaaggctagaGaagagatgtatgaaaaatat	10	2	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	73402021	73402021	G	A	SNP	PIBF1	ENST00000326291	human	ensembl	69_37n	1	known	missense	c.1066	p.E356K	1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535	175	0	0	111	26	18.98	-	-	-	A	73402021	G	A	73402021	3	1	275	1	0	0	0	0	1	0	0	0	11953	943	33	2	1092	2	PIBF1	13	73402021	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	64371	73402021	41767857	3704	29391										
MYCBP2	0	genome.wustl.edu	37	chr13	77670474	77670474	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgcagcagcctgtttttcGcggaggtatttttctctaca	9	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77670474	77670474	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	silent	c.9927	p.R3309	0.950	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	281	0	0	186	81	30.34	-	-	-	A	77670474	G	A	77670474	2	1	275	1	0	0	0	0	0	0	0	1	10090	1074	38	1		1	MYCBP2	13	77670474	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4268453	77670474	37499404	3705	29392										
MYCBP2	0	genome.wustl.edu	37	chr13	77724895	77724895	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgttatggcaatatatcGagcttccttcactatcattg	6	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77724895	77724895	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	nonsense	c.7105	p.R2369*	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,pfscan_Filamin/ABP280_repeat-like	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	221	0	0	178	55	23.61	-	-	-	A	77724895	G	A	77724895	4	1	275	1	0	0	0	0	0	1	0	0	10090	1066	37	1	7079	1	MYCBP2	13	77724895	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	54421	77724895	37444983	3706	29393										
MYCBP2	0	genome.wustl.edu	37	chr13	77740653	77740653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accacactgagggtcaaattCgattgtcatccacctcacac	6	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77740653	77740653	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.6151	p.E2051K	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	66	0	0	68	13	16.05	-	-	-	T	77740653	C	T	77740653	3	4	275	1	0	0	0	0	1	0	0	0	10090	893	31	1	8057	1	MYCBP2	13	77740653	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15758	77740653	37429225	3707	29394										
MYCBP2	0	genome.wustl.edu	37	chr13	77742767	77742767	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aattgttggacaaggccaaaGacttctacagccacctagta	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77742767	77742767	G	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	silent	c.5910	p.V1970	0.985	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	227	0	0	185	38	17.04	-	-	-	T	77742767	G	T	77742767	2	4	275	1	0	0	0	0	0	0	0	1	10090	929	33	2		2	MYCBP2	13	77742767	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2114	77742767	37427111	3708	29395										
MYCBP2	0	genome.wustl.edu	37	chr13	77791998	77791998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacttccaaatgtgaagaCctgtccatccattaaaagta	5	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77791998	77791998	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.3034	p.V1012I	1.000	superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_ARM-type_fold,prints_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	275	0	0	151	51	25.25	-	-	-	T	77791998	C	T	77791998	3	4	275	1	0	0	0	0	1	0	0	0	10090	507	18	4	11254	4	MYCBP2	13	77791998	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49231	77791998	37377880	3709	29396										
MYCBP2	0	genome.wustl.edu	37	chr13	77836235	77836235	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaactctcgtcctgcaccaaGaattgctgactcctcatcaa	5	14	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	77836235	77836235	G	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.1600	p.L534I	0.999	superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	324	1	0.31	202	26	11.4	-	-	-	T	77836235	G	T	77836235	3	4	275	1	0	0	0	0	1	0	0	0	10090	942	33	2	12728	2	MYCBP2	13	77836235	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44237	77836235	37333643	3710	29397										
SCEL	0	genome.wustl.edu	37	chr13	78176802	78176802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccaaagaagacaaaatctcGaatctgttgctaaagtgaat	7	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	78176802	78176802	G	A	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.991	p.E331K	0.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	394	0	0	259	34	11.6	-	-	-	A	78176802	G	A	78176802	3	1	275	1	0	0	0	0	1	0	0	0	13975	1059	37	1	1053	1	SCEL	13	78176802	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	340567	78176802	36993076	3711	29398										
RBM26	0	genome.wustl.edu	37	chr13	79929469	79929469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgctttctttgcttcttcGtatgttgcaaattggattag	8	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	79929469	79929469	G	A	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	silent	c.1740	p.Y580	0.997	smart_RRM_dom,pfscan_RRM_dom	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	1070	0	0	510	193	27.38	-	-	-	A	79929469	G	A	79929469	2	1	275	1	0	0	0	0	0	0	0	1	13209	1140	40	1		1	RBM26	13	79929469	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1752667	79929469	35240409	3712	29399										
SLITRK6	0	genome.wustl.edu	37	chr13	86370031	86370031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatattcggccaatgtgttCgagaaaaccaacataaggca	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	86370031	86370031	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.613	p.E205K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	89	0	0	36	9	20	-	-	-	T	86370031	C	T	86370031	3	4	275	1	0	0	0	0	1	0	0	0	14836	893	31	1	1916	1	SLITRK6	13	86370031	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6440562	86370031	28799847	3713	29400										
SLITRK5	0	genome.wustl.edu	37	chr13	88329425	88329425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacgaggtgatctgtaaggcGcccaaaaaattcgctgagac	12	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	88329425	88329425	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	silent	c.1782	p.A594	0.998	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	74	0	0	37	18	32.73	-	-	-	A	88329425	G	A	88329425	2	1	275	1	0	0	0	0	0	0	0	1	14835	1074	38	1		1	SLITRK5	13	88329425	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1959394	88329425	26840453	3714	29401										
GPC6	0	genome.wustl.edu	37	chr13	94197528	94197528	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgcaggggaacacttaaGaatctgtcctcaggaatata	9	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	94197528	94197528	G	T	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.173	p.R58I	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	415	2	0.48	293	48	14.08	-	-	-	T	94197528	G	T	94197528	3	4	275	1	0	0	0	0	1	0	0	0	6652	942	33	2	179	2	GPC6	13	94197528	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5868103	94197528	20972350	3715	29402										
GPC6	0	genome.wustl.edu	37	chr13	94680124	94680124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcaaatcaggctgacctcGacacagagtggaatctgttt	11	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	94680124	94680124	G	A	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.853	p.D285N	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	218	0	0	162	34	17.26	-	-	-	A	94680124	G	A	94680124	3	1	275	1	0	0	0	0	1	0	0	0	6652	1058	37	1	867	1	GPC6	13	94680124	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	482596	94680124	20489754	3716	29403										
GPC6	0	genome.wustl.edu	37	chr13	95055389	95055389	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaccggagagaggtggactCttctgcagcccagcgtggcc	15	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	95055389	95055389	C	A	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.1586	p.S529Y	0.685	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	167	0	0	85	28	24.78	-	-	-	A	95055389	C	A	95055389	3	1	275	1	0	0	0	0	1	0	0	0	6652	913	32	2	1620	2	GPC6	13	95055389	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	375265	95055389	20114489	3717	29404										
DCT	0	genome.wustl.edu	37	chr13	95092216	95092216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaggggtgtatatccttttCgaagtcttctatattgaaga	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	95092216	95092216	C	T	SNP	DCT	ENST00000446125	human	ensembl	69_37n	-1	known	missense	c.1595	p.R532Q	0.305	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	397	0	0	212	52	19.7	-	-	-	T	95092216	C	T	95092216	3	4	275	1	0	0	0	0	1	0	0	0	4335	884	31	1	67	1	DCT	13	95092216	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36827	95092216	20077662	3718	29405										
DCT	0	genome.wustl.edu	37	chr13	95121216	95121216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggaatggatgttctgccGaatcactggtggtttcttcc	11	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	95121216	95121216	G	A	SNP	DCT	ENST00000446125	human	ensembl	69_37n	-1	known	missense	c.379	p.R127W	0.993	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	214	0	0	126	16	11.27	-	-	-	A	95121216	G	A	95121216	3	1	275	1	0	0	0	0	1	0	0	0	4335	1057	37	1	1315	1	DCT	13	95121216	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	29000	95121216	20048662	3719	29406										
ABCC4	0	genome.wustl.edu	37	chr13	95861766	95861766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccatcccagcaaggcacGatattcctatctccatccag	6	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	95861766	95861766	G	A	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.707	p.S236L	0.990	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	103	0	0	53	22	29.33	-	-	-	A	95861766	G	A	95861766	3	1	275	1	0	0	0	0	1	0	0	0	55	1059	37	1	3423	1	ABCC4	13	95861766	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	740550	95861766	19308112	3720	29407										
DZIP1	0	genome.wustl.edu	37	chr13	96236930	96236930	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttaattagatatttataaaGatgaaacacaactaataaga	5	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	96236930	96236930	G	T	SNP	DZIP1	ENST00000479518	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DZIP1	HGNC	ENSG00000134874	123	0	0	69	36	34.29	-	-	-	T	96236930	G	T	96236930	1	4	275	0	1	0	0	0	0	0	0	0	4898	957	33	2		2	DZIP1	13	96236930	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	375164	96236930	18932948	3721	29408										
DNAJC3	0	genome.wustl.edu	37	chr13	96412328	96412328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagaactacgggaacttcGagctgaatgttttataaaag	10	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	96412328	96412328	G	A	SNP	DNAJC3	ENST00000376795	human	ensembl	69_37n	1	known	missense	c.581	p.R194Q	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC3	HGNC	ENSG00000102580	403	0	0	299	107	26.29	-	-	-	A	96412328	G	A	96412328	3	1	275	1	0	0	0	0	1	0	0	0	4682	1058	37	1	603	1	DNAJC3	13	96412328	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	175398	96412328	18757550	3722	29409										
UGGT2	0	genome.wustl.edu	37	chr13	96508474	96508474	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaagaacatcaaggaaaaGaattttgtaaccccaaataa	6	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	96508474	96508474	G	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.3946	p.L1316I	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	411	0	0	265	39	12.83	-	-	-	T	96508474	G	T	96508474	3	4	275	1	0	0	0	0	1	0	0	0	17039	942	33	2	628	2	UGGT2	13	96508474	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	96146	96508474	18661404	3723	29410										
UGGT2	0	genome.wustl.edu	37	chr13	96577957	96577957	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctttaatgcattaaaaaGaagttttctcccagaaggct	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	96577957	96577957	G	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.2272	p.L758I	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	148	0	0	91	14	13.33	-	-	-	T	96577957	G	T	96577957	3	4	275	1	0	0	0	0	1	0	0	0	17039	942	33	2	2358	2	UGGT2	13	96577957	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69483	96577957	18591921	3724	29411										
HS6ST3	0	genome.wustl.edu	37	chr13	97485280	97485280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagtatgcaaaagatctctTccagcagcgctaccaccaca	7	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	97485280	97485280	T	C	SNP	HS6ST3	ENST00000376705	human	ensembl	69_37n	1	known	missense	c.1244	p.F415S	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	122	1	0.81	109	29	20.71	-	-	-	C	97485280	T	C	97485280	3	2	275	1	0	0	0	0	1	0	0	0	7423	1783	62	5	1250	5	HS6ST3	13	97485280	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	907323	97485280	17684598	3725	29412										
OXGR1	0	genome.wustl.edu	37	chr13	97639804	97639804	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggccaggttcagcataatGatggtgctgctcttccaagg	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	97639804	97639804	G	T	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	silent	c.210	p.I70	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	368	1	0.27	259	61	19.06	-	-	-	T	97639804	G	T	97639804	2	4	275	1	0	0	0	0	0	0	0	1	11405	1280	45	2		2	OXGR1	13	97639804	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154524	97639804	17530074	3726	29413										
STK24	0	genome.wustl.edu	37	chr13	99171581	99171581	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgttgaatgtcctctatCtcatcttcagcttcttccag	5	12	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	99171581	99171581	C	A	SNP	STK24	ENST00000376547	human	ensembl	69_37n	-1	known	missense	c.225	p.E75D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572	323	0	0	209	27	11.44	-	-	-	A	99171581	C	A	99171581	3	1	275	1	0	0	0	0	1	0	0	0	15384	912	32	2	1146	2	STK24	13	99171581	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1531777	99171581	15998297	3727	29414										
DOCK9	0	genome.wustl.edu	37	chr13	99508282	99508282	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagttgaggttgtatatggaGaagctaaatggaaatcaagc	13	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	99508282	99508282	G	T	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.3704	p.S1235Y	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	248	0	0	179	40	18.26	-	-	-	T	99508282	G	T	99508282	3	4	275	1	0	0	0	0	1	0	0	0	4729	942	33	2	2593	2	DOCK9	13	99508282	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336701	99508282	15661596	3728	29415										
GPR183	0	genome.wustl.edu	37	chr13	99947551	99947551	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagaaatctggaacgaatgTctttggctacattccaggaa	10	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	99947551	99947551	T	C	SNP	GPR183	ENST00000376414	human	ensembl	69_37n	-1	known	silent	c.849	p.R283	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR183	HGNC	ENSG00000169508	103	0	0	83	14	14.29	-	-	-	C	99947551	T	C	99947551	2	2	275	1	0	0	0	0	0	0	0	1	6728	1664	58	5		5	GPR183	13	99947551	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	439269	99947551	15222327	3729	29416										
CLYBL	0	genome.wustl.edu	37	chr13	100543601	100543601	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttccaagggagtatgatCgacatgccattactgaagca	9	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	100543601	100543601	C	T	SNP	CLYBL	ENST00000339105	human	ensembl	69_37n	1	known	silent	c.957	p.I319	1.000	pirsf_Citrate_lyase_beta	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246	132	0	0	77	19	19.79	-	-	-	T	100543601	C	T	100543601	2	4	275	1	0	0	0	0	0	0	0	1	3603	874	31	1		1	CLYBL	13	100543601	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	596050	100543601	14626277	3730	29417										
NALCN	0	genome.wustl.edu	37	chr13	101742293	101742293	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagcgtttcccacattgtcGaaattaaagttccgaggatt	8	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	101742293	101742293	G	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.3294	p.F1098	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	293	1	0.34	125	42	25.15	-	-	-	A	101742293	G	A	101742293	2	1	275	1	0	0	0	0	0	0	0	1	10220	1049	37	1		1	NALCN	13	101742293	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1198692	101742293	13427585	3731	29418										
NALCN	0	genome.wustl.edu	37	chr13	102029095	102029095	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgataagtaaatgttccAaacatctgaactcctaaaat	5	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	102029095	102029095	A	G	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.600	p.F200	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	168	0	0	127	27	17.53	-	-	-	G	102029095	A	G	102029095	2	3	275	1	0	0	0	0	0	0	0	1	10220	127	5	5		5	NALCN	13	102029095	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	286802	102029095	13140783	3732	29419										
NALCN	0	genome.wustl.edu	37	chr13	102029286	102029286	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttaaaatatttgtaattCtggtccttggcagttcaaat	6	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	102029286	102029286	C	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.497	p.R166I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	197	0	0	149	23	13.37	-	-	-	A	102029286	C	A	102029286	3	1	275	1	0	0	0	0	1	0	0	0	10220	913	32	2	4879	2	NALCN	13	102029286	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	191	102029286	13140592	3733	29420										
TPP2	0	genome.wustl.edu	37	chr13	103296983	103296983	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacattgattataccatttCtttccatgggatagtgtgta	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	103296983	103296983	C	A	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.2252	p.S751Y	1.000	NULL	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	449	0	0	288	75	20.66	-	-	-	A	103296983	C	A	103296983	3	1	275	1	0	0	0	0	1	0	0	0	16508	913	32	2	2322	2	TPP2	13	103296983	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1267697	103296983	11872895	3734	29421										
ARGLU1	0	genome.wustl.edu	37	chr13	107211877	107211877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttggcttcctccacccttCggagaacttctcgttcaatt	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	107211877	107211877	C	T	SNP	ARGLU1	ENST00000400198	human	ensembl	69_37n	-1	known	missense	c.476	p.R159Q	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884	326	0	0	214	29	11.89	-	-	-	T	107211877	C	T	107211877	3	4	275	1	0	0	0	0	1	0	0	0	862	884	31	1	357	1	ARGLU1	13	107211877	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3914894	107211877	7958001	3735	29422										
COL4A1	0	genome.wustl.edu	37	chr13	110814644	110814644	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtacccgtggtaaagaatTttggtcccagaaggacactg	12	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	110814644	110814644	T	G	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.4395	p.K1465N	0.049	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	495	0	0	197	111	36.04	-	-	-	G	110814644	T	G	110814644	3	3	275	1	0	0	0	0	1	0	0	0	3719	1838	64	5	634	5	COL4A1	13	110814644	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3602767	110814644	4355234	3736	29423										
COL4A1	0	genome.wustl.edu	37	chr13	110829238	110829238	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcctggacttgcctttctCtccttggtctcctttctggc	7	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	110829238	110829238	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.2863	p.E955K	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	222	0	0	98	27	21.6	-	-	-	T	110829238	C	T	110829238	3	4	275	1	0	0	0	0	1	0	0	0	3719	922	32	2	2222	2	COL4A1	13	110829238	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14594	110829238	4340640	3737	29424										
COL4A2	0	genome.wustl.edu	37	chr13	111141854	111141854	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggcgcgactggtgatttCggtgagtgttgcccgtccag	15	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	111141854	111141854	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	silent	c.3270	p.F1090	0.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	159	0	0	116	25	17.73	-	-	-	T	111141854	C	T	111141854	2	4	275	1	0	0	0	0	0	0	0	1	3720	898	31	1		1	COL4A2	13	111141854	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	312616	111141854	4028024	3738	29425										
ANKRD10	0	genome.wustl.edu	37	chr13	111545431	111545431	+	Missense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcttccaagcatctctttCgatttgttcccacactaata							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	111545431	111545431	C	T	SNP	ANKRD10	ENST00000267339	human	ensembl	69_37n	-1	known	missense	c.635	p.R212Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448	284	0	0	196	27	12.11	-	-	-	T	111545431	C	T	111545431	3	4	275	1	0	0	0	0	1	0	0	0	638	884	31	1	639	1	ANKRD10	13	111545431	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	403577	111545431	3624447	3739	29426	246	2								
ANKRD10	0	genome.wustl.edu	37	chr13	111545432	111545432	+	Nonsense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttccaagcatctctttcGatttgttcccacactaatat							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	111545432	111545432	G	A	SNP	ANKRD10	ENST00000267339	human	ensembl	69_37n	-1	known	nonsense	c.634	p.R212*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448	280	0	0	187	34	15.38	-	-	-	A	111545432	G	A	111545432	4	1	275	1	0	0	0	0	0	1	0	0	638	1066	37	1	640	1	ANKRD10	13	111545432	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1	111545432	3624446	3740	29427	246	2								
TUBGCP3	0	genome.wustl.edu	37	chr13	113174225	113174225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagccgcacgtccagccttCgcaggatctcaggactgtca	11	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113174225	113174225	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.1856	p.R619Q	0.394	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	142	0	0	52	18	25.71	-	-	-	T	113174225	C	T	113174225	3	4	275	1	0	0	0	0	1	0	0	0	16864	884	31	1	899	1	TUBGCP3	13	113174225	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1628793	113174225	1995653	3741	29428										
TUBGCP3	0	genome.wustl.edu	37	chr13	113200015	113200015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgaacaccgatccttacttCgtggtaagtgtcctcaagct	8	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113200015	113200015	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.1333	p.E445K	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	247	0	0	126	24	16	-	-	-	T	113200015	C	T	113200015	3	4	275	1	0	0	0	0	1	0	0	0	16864	893	31	1	1438	1	TUBGCP3	13	113200015	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25790	113200015	1969863	3742	29429										
MCF2L	0	genome.wustl.edu	37	chr13	113728862	113728862	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgagggacctggccagcttCgaggagaaatcaggcgtaag	15	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113728862	113728862	C	T	SNP	MCF2L	ENST00000397017	human	ensembl	69_37n	1	novel	nonsense	c.82	p.R28*	0.508	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MCF2L	HGNC	ENSG00000126217	40	0	0	22	10	31.25	-	-	-	T	113728862	C	T	113728862	4	4	275	1	0	0	0	0	0	1	0	0	9450	883	31	1	1405	1	MCF2L	13	113728862	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	528847	113728862	1441016	3743	29430										
F7	0	genome.wustl.edu	37	chr13	113768082	113768082	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagaagctgttctggatttCttacagtggtgagtggatga	13	5	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113768082	113768082	C	A	SNP	F7	ENST00000375581	human	ensembl	69_37n	1	known	missense	c.308	p.S103Y	0.000	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F7	HGNC	ENSG00000057593	43	0	0	32	9	21.95	-	-	-	A	113768082	C	A	113768082	3	1	275	1	0	0	0	0	1	0	0	0	5386	913	32	2	322	2	F7	13	113768082	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39220	113768082	1401796	3744	29431										
F10	0	genome.wustl.edu	37	chr13	113792779	113792779	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttccttttagaatgaattCtggaataaatacaaaggtca	6	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113792779	113792779	C	A	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	missense	c.240	p.F80L	1.000	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	163	0	0	96	23	19.33	-	-	-	A	113792779	C	A	113792779	3	1	275	1	0	0	0	0	1	0	0	0	5373	912	32	2	250	2	F10	13	113792779	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24697	113792779	1377099	3745	29432										
PCID2	0	genome.wustl.edu	37	chr13	113852542	113852542	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttcatcataagggggttCcaagacttgttgacacttct	8	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	113852542	113852542	C	A	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	nonsense	c.163	p.E55*	1.000	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	91	0	0	71	14	16.47	-	-	-	A	113852542	C	A	113852542	4	1	275	1	0	0	0	0	0	1	0	0	11652	864	30	2	1084	2	PCID2	13	113852542	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59763	113852542	1317336	3746	29433										
CDC16	0	genome.wustl.edu	37	chr13	115037883	115037883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgaatgaaagtgacatgAtgttagagacatctatgtca	9	4	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	13	115037883	115037883	A	C	SNP	CDC16	ENST00000356221	human	ensembl	69_37n	1	known	missense	c.1828	p.M610L	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177	151	0	0	94	32	25.4	-	-	-	C	115037883	A	C	115037883	3	2	275	1	0	0	0	0	1	0	0	0	3087	333	12	5	1898	5	CDC16	13	115037883	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1185341	115037883	131995	3747	29434										
OR4Q3	0	genome.wustl.edu	37	chr14	20216514	20216514	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggataaaaccatgtggcattCcattgccttgttaaggaatg	10	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20216514	20216514	C	A	SNP	OR4Q3	ENST00000331723	human	ensembl	69_37n	1	known	missense	c.928	p.P310T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	275	0	0	206	56	21.37	-	-	-	A	20216514	C	A	20216514	3	1	275	1	0	0	0	0	1	0	0	0	11154	855	30	2	930	2	OR4Q3	14	20216514	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		20216514	87133026	3748	29435										
OR4M1	0	genome.wustl.edu	37	chr14	20248603	20248603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatttgttcatcctaccagGaaatatccttatcatttgca	4	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20248603	20248603	G	T	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	missense	c.122	p.G41V	0.966	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	812	1	0.12	637	138	17.81	-	-	-	T	20248603	G	T	20248603	3	4	275	1	0	0	0	0	1	0	0	0	11148	1174	41	2	124	2	OR4M1	14	20248603	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32089	20248603	87100937	3749	29436										
OR4K2	0	genome.wustl.edu	37	chr14	20344960	20344960	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgaggtagacagctttttCtgtgaccttcctgtggtgtt	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20344960	20344960	C	A	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.534	p.F178L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	315	0	0	265	55	17.19	-	-	-	A	20344960	C	A	20344960	3	1	275	1	0	0	0	0	1	0	0	0	11145	912	32	2	536	2	OR4K2	14	20344960	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	96357	20344960	87004580	3750	29437										
OR4K1	0	genome.wustl.edu	37	chr14	20403974	20403974	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaattattgtcattatttCttttgactcccatttgaact	3	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20403974	20403974	C	A	SNP	OR4K1	ENST00000285600	human	ensembl	69_37n	1	known	missense	c.149	p.S50Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	777	1	0.13	595	102	14.63	-	-	-	A	20403974	C	A	20403974	3	1	275	1	0	0	0	0	1	0	0	0	11140	913	32	2	151	2	OR4K1	14	20403974	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59014	20403974	86945566	3751	29438										
OR4K15	0	genome.wustl.edu	37	chr14	20443973	20443973	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagacgtatgtgttgcctCttttgctacccctaaaatga	7	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20443973	20443973	C	A	SNP	OR4K15	ENST00000305051	human	ensembl	69_37n	1	known	missense	c.296	p.S99Y	0.009	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488	381	1	0.26	245	49	16.67	-	-	-	A	20443973	C	A	20443973	3	1	275	1	0	0	0	0	1	0	0	0	11143	913	32	2	298	2	OR4K15	14	20443973	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39999	20443973	86905567	3752	29439										
OR4K17	0	genome.wustl.edu	37	chr14	20585936	20585936	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaagcagaaggtaatttCttttgctgggtgcttcactc	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20585936	20585936	C	A	SNP	OR4K17	ENST00000315543	human	ensembl	69_37n	1	known	missense	c.371	p.S124Y	0.718	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K17	HGNC	ENSG00000176230	251	0	0	202	29	12.55	-	-	-	A	20585936	C	A	20585936	3	1	275	1	0	0	0	0	1	0	0	0	11144	913	32	2	373	2	OR4K17	14	20585936	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141963	20585936	86763604	3753	29440										
CCNB1IP1	0	genome.wustl.edu	37	chr14	20784645	20784645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagtttgatgcgacactttCgataattacaaagcagcatg	9	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20784645	20784645	C	T	SNP	CCNB1IP1	ENST00000353689	human	ensembl	69_37n	-1	known	missense	c.38	p.R13Q	0.996	NULL	NULL	-	no_errors	CCNB1IP1	HGNC	ENSG00000100814	113	0	0	49	10	16.95	-	-	-	T	20784645	C	T	20784645	3	4	275	1	0	0	0	0	1	0	0	0	2941	884	31	1	807	1	CCNB1IP1	14	20784645	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	198709	20784645	86564895	3754	29441										
PARP2	0	genome.wustl.edu	37	chr14	20819270	20819270	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaacaaggccaaggaaatCtttcagaagaagtgagtgct	10	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20819270	20819270	C	A	SNP	PARP2	ENST00000250416	human	ensembl	69_37n	1	known	silent	c.525	p.I175	1.000	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484	245	0	0	200	38	15.97	-	-	-	A	20819270	C	A	20819270	2	1	275	1	0	0	0	0	0	0	0	1	11534	903	32	2		2	PARP2	14	20819270	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34625	20819270	86530270	3755	29442										
PARP2	0	genome.wustl.edu	37	chr14	20825602	20825602	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagaggccaatcctaaggcCgaaggattgcttcaaggtaa	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	20825602	20825602	C	T	SNP	PARP2	ENST00000250416	human	ensembl	69_37n	1	known	silent	c.1515	p.A505	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484	204	0	0	149	26	14.86	-	-	-	T	20825602	C	T	20825602	2	4	275	1	0	0	0	0	0	0	0	1	11534	639	23	1		1	PARP2	14	20825602	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6332	20825602	86523938	3756	29443										
RNASE11	0	genome.wustl.edu	37	chr14	21052475	21052475	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaactaacaggatcgggttCattaatatctcaatggtctg	8	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21052475	21052475	C	G	SNP	RNASE11	ENST00000335950	human	ensembl	69_37n	-1	known	missense	c.159	p.M53I	0.002	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE11	HGNC	ENSG00000173464	366	0	0	251	49	16.28	-	-	-	G	21052475	C	G	21052475	3	3	275	1	0	0	0	0	1	0	0	0	13487	826	29	2	444	2	RNASE11	14	21052475	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	226873	21052475	86297065	3757	29444										
SLC39A2	0	genome.wustl.edu	37	chr14	21469139	21469139	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggagagctcatcatctccCtgggcttcttttttgtcttc	8	11	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21469139	21469139	C	A	SNP	SLC39A2	ENST00000298681	human	ensembl	69_37n	1	known	missense	c.331	p.L111M	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A2	HGNC	ENSG00000165794	147	0	0	140	52	27.08	-	-	-	A	21469139	C	A	21469139	3	1	275	1	0	0	0	0	1	0	0	0	14707	680	24	4	345	4	SLC39A2	14	21469139	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	416664	21469139	85880401	3758	29445										
RNASE7	0	genome.wustl.edu	37	chr14	21511424	21511424	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccccaaaatagcctgcaaGaatggcgataaaaactgcca	7	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21511424	21511424	G	T	SNP	RNASE7	ENST00000298690	human	ensembl	69_37n	1	known	missense	c.273	p.K91N	0.993	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE7	HGNC	ENSG00000165799	330	0	0	351	42	10.69	-	-	-	T	21511424	G	T	21511424	3	4	275	1	0	0	0	0	1	0	0	0	13494	933	33	2	275	2	RNASE7	14	21511424	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42285	21511424	85838116	3759	29446										
SUPT16H	0	genome.wustl.edu	37	chr14	21826541	21826541	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctctactttctcaatgaAatttttaaaggctgttttca	5	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21826541	21826541	A	C	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.2347	p.F783V	1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	258	0	0	209	35	14.34	-	-	-	C	21826541	A	C	21826541	3	2	275	1	0	0	0	0	1	0	0	0	15487	14	1	5	824	5	SUPT16H	14	21826541	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	315117	21826541	85522999	3760	29447										
SUPT16H	0	genome.wustl.edu	37	chr14	21838004	21838004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcttcattaggttgagctCcccatcctcctttacagcga	6	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21838004	21838004	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.535	p.E179K	1.000	superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	165	0	0	164	29	14.95	-	-	-	T	21838004	C	T	21838004	3	4	275	1	0	0	0	0	1	0	0	0	15487	864	30	2	2696	2	SUPT16H	14	21838004	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11463	21838004	85511536	3761	29448										
CHD8	0	genome.wustl.edu	37	chr14	21869062	21869062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggagatgcttttccacccGaaagcagtcagtgcgcccat	10	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21869062	21869062	G	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.4342	p.R1448W	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	176	0	0	118	14	10.61	-	-	-	A	21869062	G	A	21869062	3	1	275	1	0	0	0	0	1	0	0	0	3360	1057	37	1	3471	1	CHD8	14	21869062	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31058	21869062	85480478	3762	29449										
CHD8	0	genome.wustl.edu	37	chr14	21883102	21883102	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacagatcacgtactagttCttgtacttgacaaagaattc	7	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21883102	21883102	C	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.2019	p.K673N	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	339	0	0	300	49	14.04	-	-	-	A	21883102	C	A	21883102	3	1	275	1	0	0	0	0	1	0	0	0	3360	912	32	2	5850	2	CHD8	14	21883102	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14040	21883102	85466438	3763	29450										
TOX4	0	genome.wustl.edu	37	chr14	21957455	21957455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcatatgctttattctttCgtgatacacaggctgccatc	7	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	21957455	21957455	C	T	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	missense	c.703	p.R235C	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	321	0	0	261	31	10.58	-	-	-	T	21957455	C	T	21957455	3	4	275	1	0	0	0	0	1	0	0	0	16476	884	31	1	721	1	TOX4	14	21957455	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	74353	21957455	85392085	3764	29451										
OR10G3	0	genome.wustl.edu	37	chr14	22037946	22037946	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacactttcaaacctcactCggagttcttgggcttctgag	9	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	22037946	22037946	C	T	SNP	OR10G3	ENST00000303532	human	ensembl	69_37n	-1	known	silent	c.930	p.P310	0.005	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208	75	0	0	56	10	15.15	-	-	-	T	22037946	C	T	22037946	2	4	275	1	0	0	0	0	0	0	0	1	10973	871	31	1		1	OR10G3	14	22037946	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80491	22037946	85311594	3765	29452										
OR10G3	0	genome.wustl.edu	37	chr14	22038564	22038564	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctgcccaggaagtgataGaaatagagttgagcaacaca	12	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	22038564	22038564	G	T	SNP	OR10G3	ENST00000303532	human	ensembl	69_37n	-1	known	missense	c.312	p.F104L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208	104	0	0	89	12	11.88	-	-	-	T	22038564	G	T	22038564	3	4	275	1	0	0	0	0	1	0	0	0	10973	933	33	2	632	2	OR10G3	14	22038564	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	618	22038564	85310976	3766	29453										
REM2	0	genome.wustl.edu	37	chr14	23353905	23353905	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagatgccacgctactaaaGaagtcagagaaactgttggc	11	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	23353905	23353905	G	T	SNP	REM2	ENST00000267396	human	ensembl	69_37n	1	known	missense	c.126	p.K42N	1.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase	-	no_errors	REM2	HGNC	ENSG00000139890	75	0	0	63	11	14.86	-	-	-	T	23353905	G	T	23353905	3	4	275	1	0	0	0	0	1	0	0	0	13306	933	33	2	132	2	REM2	14	23353905	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1315341	23353905	83995635	3767	29454										
PRMT5	0	genome.wustl.edu	37	chr14	23395967	23395967	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgtgtagttggtgcattCtcaattatatcatctctcag	9	7	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	23395967	23395967	C	T	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	silent	c.507	p.E169	1.000	pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	499	1	0.2	264	119	31.07	-	-	-	T	23395967	C	T	23395967	2	4	275	1	0	0	0	0	0	0	0	1	12620	912	32	2		2	PRMT5	14	23395967	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42062	23395967	83953573	3768	29455										
C14orf93	0	genome.wustl.edu	37	chr14	23457128	23457128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacccgatatcggcgacttCgaagtttcttctcctctttt	6	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	23457128	23457128	C	T	SNP	C14orf93	ENST00000299088	human	ensembl	69_37n	-1	known	missense	c.1181	p.R394Q	1.000	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802	222	0	0	132	18	12	-	-	-	T	23457128	C	T	23457128	3	4	275	1	0	0	0	0	1	0	0	0	1794	884	31	1	443	1	C14orf93	14	23457128	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61161	23457128	83892412	3769	29456										
LRRC16B	0	genome.wustl.edu	37	chr14	24524288	24524288	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccacaggtggcttctctgaGacctacgctgctctgtgtga	11	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24524288	24524288	G	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.474	p.E158D	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	292	0	0	218	37	14.45	-	-	-	T	24524288	G	T	24524288	3	4	275	1	0	0	0	0	1	0	0	0	9038	933	33	2	500	2	LRRC16B	14	24524288	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1067160	24524288	82825252	3770	29457										
CPNE6	0	genome.wustl.edu	37	chr14	24545068	24545068	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacaccttcctggattacatCatgggtggctgccagatcag	10	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24545068	24545068	C	A	SNP	CPNE6	ENST00000537691	human	ensembl	69_37n	1	known	silent	c.1062	p.I354	1.000	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884	112	0	0	98	20	16.95	-	-	-	A	24545068	C	A	24545068	2	1	275	1	0	0	0	0	0	0	0	1	3846	816	29	2		2	CPNE6	14	24545068	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20780	24545068	82804472	3771	29458										
DCAF11	0	genome.wustl.edu	37	chr14	24584924	24584924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagaggatgaagatgtgGatctggcccaggtactggcc	15	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24584924	24584924	G	T	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.121	p.D41Y	1.000	pirsf_WD_repeat_p23	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	40	0	0	19	4	17.39	-	-	-	T	24584924	G	T	24584924	3	4	275	1	0	0	0	0	1	0	0	0	4294	1174	41	2	123	2	DCAF11	14	24584924	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39856	24584924	82764616	3772	29459										
REC8	0	genome.wustl.edu	37	chr14	24648882	24648882	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggtgcccatggagatgccTttggtgctgcccccagagct	14	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24648882	24648882	T	G	SNP	REC8	ENST00000559797	human	ensembl	69_37n	1	known	missense	c.502	p.F168V	0.473	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	REC8	HGNC	ENSG00000100918	88	0	0	37	20	35.09	-	-	-	G	24648882	T	G	24648882	3	3	275	1	0	0	0	0	1	0	0	0	13282	1596	56	5	1464	5	REC8	14	24648882	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	63958	24648882	82700658	3773	29460										
RABGGTA	0	genome.wustl.edu	37	chr14	24735876	24735876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcacgcagttacctgttCggggtggagggtcctgcaca	15	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24735876	24735876	C	T	SNP	RABGGTA	ENST00000560243	human	ensembl	69_37n	-1	known	missense	c.389	p.R130Q	0.002	NULL	NULL	-	no_start_codon	RABGGTA	HGNC	ENSG00000100949	47	0	0	30	9	23.08	-	-	-	T	24735876	C	T	24735876	3	4	275	1	0	0	0	0	1	0	0	0	13050	899	31	1		1	RABGGTA	14	24735876	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86994	24735876	82613664	3774	29461										
NYNRIN	0	genome.wustl.edu	37	chr14	24886015	24886015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggggccccagtttgcccGgcacgtccttgtgagctgtg	14	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24886015	24886015	G	A	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.5060	p.R1687Q	1.000	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	29	0	0	13	6	31.58	-	-	-	A	24886015	G	A	24886015	3	1	275	1	0	0	0	0	1	0	0	0	10869	1116	39	1	5090	1	NYNRIN	14	24886015	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	150139	24886015	82463525	3775	29462										
NYNRIN	0	genome.wustl.edu	37	chr14	24886565	24886565	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggggcttcccaaccccagaGaagctggggtgcatctatcc	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	24886565	24886565	G	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.5610	p.E1870D	1.000	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	60	0	0	27	12	30.77	-	-	-	T	24886565	G	T	24886565	3	4	275	1	0	0	0	0	1	0	0	0	10869	933	33	2	5640	2	NYNRIN	14	24886565	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	550	24886565	82462975	3776	29463										
G2E3	0	genome.wustl.edu	37	chr14	31074844	31074844	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttagatgcattcagaaatCgaaactttaatccttcatat	4	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31074844	31074844	C	T	SNP	G2E3	ENST00000206595	human	ensembl	69_37n	1	known	nonsense	c.1144	p.R382*	0.965	superfamily_HECT,smart_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140	158	0	0	120	42	25.93	-	-	-	T	31074844	C	T	31074844	4	4	275	1	0	0	0	0	0	1	0	0	6189	876	31	1	1182	1	G2E3	14	31074844	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6188279	31074844	76274696	3777	29464										
SCFD1	0	genome.wustl.edu	37	chr14	31107337	31107337	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgtattgataggatcttCgaaatcaactatatgaatca	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31107337	31107337	C	T	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	1	known	nonsense	c.319	p.R107*	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	118	0	0	64	34	34.69	-	-	-	T	31107337	C	T	31107337	4	4	275	1	0	0	0	0	0	1	0	0	13976	876	31	1	337	1	SCFD1	14	31107337	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32493	31107337	76242203	3778	29465										
STRN3	0	genome.wustl.edu	37	chr14	31405748	31405748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttccttctgggatgccttCgatcatgtcattttcctcat	6	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31405748	31405748	C	T	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	missense	c.799	p.E267K	1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	368	0	0	253	34	11.81	-	-	-	T	31405748	C	T	31405748	3	4	275	1	0	0	0	0	1	0	0	0	15421	893	31	1	1646	1	STRN3	14	31405748	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	298411	31405748	75943792	3779	29466										
HECTD1	0	genome.wustl.edu	37	chr14	31585633	31585633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaggtgacggagtacattcGacttcttccaagagctctga	11	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31585633	31585633	G	A	SNP	HECTD1	ENST00000554882	human	ensembl	69_37n	-1	novel	missense	c.524	p.S175L	0.736	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HECTD1	HGNC	ENSG00000092148	166	0	0	142	27	15.88	-	-	-	A	31585633	G	A	31585633	3	1	275	1	0	0	0	0	1	0	0	0	7090	1045	37	1	2461	1	HECTD1	14	31585633	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	179885	31585633	75763907	3780	29467										
HECTD1	0	genome.wustl.edu	37	chr14	31598166	31598166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actagactccccaggagtacGaacagaactatcagggccta	9	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31598166	31598166	G	A	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.4411	p.R1471C	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	95	0	0	66	34	34	-	-	-	A	31598166	G	A	31598166	3	1	275	1	0	0	0	0	1	0	0	0	7090	1058	37	1	3497	1	HECTD1	14	31598166	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12533	31598166	75751374	3781	29468										
HEATR5A	0	genome.wustl.edu	37	chr14	31817009	31817009	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataaaggattccaatacaaGaatttaggtgttgagaagaa	9	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31817009	31817009	G	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.2795	p.S932Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	273	0	0	176	23	11.56	-	-	-	T	31817009	G	T	31817009	3	4	275	1	0	0	0	0	1	0	0	0	7082	942	33	2	3399	2	HEATR5A	14	31817009	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	218843	31817009	75532531	3782	29469										
HEATR5A	0	genome.wustl.edu	37	chr14	31856419	31856419	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaccacctatagtagttcGaagaataaatgaaacacaac	6	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	31856419	31856419	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	nonsense	c.1078	p.R360*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	251	0	0	210	26	11.02	-	-	-	A	31856419	G	A	31856419	4	1	275	1	0	0	0	0	0	1	0	0	7082	1066	37	1	5160	1	HEATR5A	14	31856419	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39410	31856419	75493121	3783	29470										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562420	32562420	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaaaagatgaactagttCatgggtatatattagtttac	8	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	32562420	32562420	C	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.2545	p.H849N	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	42	0	0	36	16	30.77	-	-	-	A	32562420	C	A	32562420	3	1	275	1	0	0	0	0	1	0	0	0	888	826	29	2	2547	2	ARHGAP5	14	32562420	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	706001	32562420	74787120	3784	29471										
AKAP6	0	genome.wustl.edu	37	chr14	33014535	33014535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgtggcattactgcattcGaactgtctgactacagtcca	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	33014535	33014535	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.676	p.E226K	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	273	0	0	194	38	16.24	-	-	-	A	33014535	G	A	33014535	3	1	275	1	0	0	0	0	1	0	0	0	455	1059	37	1	686	1	AKAP6	14	33014535	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	452115	33014535	74335005	3785	29472										
AKAP6	0	genome.wustl.edu	37	chr14	33291974	33291974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagagcaaaagataaaacGaagtgtttctgatatcactc	7	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	33291974	33291974	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.4955	p.R1652Q	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	198	0	0	134	35	20.71	-	-	-	A	33291974	G	A	33291974	3	1	275	1	0	0	0	0	1	0	0	0	455	1058	37	1	5001	1	AKAP6	14	33291974	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	277439	33291974	74057566	3786	29473										
SNX6	0	genome.wustl.edu	37	chr14	35062320	35062320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggttatgatactccaaaaGaaatgttcgttcgtgctcaa	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	35062320	35062320	G	T	SNP	SNX6	ENST00000362031	human	ensembl	69_37n	-1	known	missense	c.685	p.L229I	1.000	pfam_Vps5_C,pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515	281	0	0	236	28	10.57	-	-	-	T	35062320	G	T	35062320	3	4	275	1	0	0	0	0	1	0	0	0	14995	942	33	2	599	2	SNX6	14	35062320	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1770346	35062320	72287220	3787	29474										
CFL2	0	genome.wustl.edu	37	chr14	35182700	35182700	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgatctcctcttgtgtaGaagatttccttactttcata	5	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	35182700	35182700	G	T	SNP	CFL2	ENST00000298159	human	ensembl	69_37n	-1	known	missense	c.71	p.S24Y	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	CFL2	HGNC	ENSG00000165410	108	0	0	73	12	14.12	-	-	-	T	35182700	G	T	35182700	3	4	275	1	0	0	0	0	1	0	0	0	3320	942	33	2	441	2	CFL2	14	35182700	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	120380	35182700	72166840	3788	29475										
PPP2R3C	0	genome.wustl.edu	37	chr14	35576562	35576562	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catataaactgagtcctattCttgtttgatgaagccaaact	6	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	35576562	35576562	C	A	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.521	p.R174I	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	163	0	0	110	36	24.66	-	-	-	A	35576562	C	A	35576562	3	1	275	1	0	0	0	0	1	0	0	0	12467	913	32	2	872	2	PPP2R3C	14	35576562	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	393862	35576562	71772978	3789	29476										
RALGAPA1	0	genome.wustl.edu	37	chr14	36039830	36039830	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaaaggatacaagttttGatacaatggaatcagagatt	8	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	36039830	36039830	G	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.6112	p.Q2038K	1.000	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	92	0	0	65	17	20.73	-	-	-	T	36039830	G	T	36039830	3	4	275	1	0	0	0	0	1	0	0	0	13096	1299	45	2	304	2	RALGAPA1	14	36039830	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	463268	36039830	71309710	3790	29477										
RALGAPA1	0	genome.wustl.edu	37	chr14	36244884	36244884	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagtcacaaaattttcaaaGaacacatagtatatatgtga	5	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	36244884	36244884	G	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.174	p.F58L	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	86	0	0	60	7	10.45	-	-	-	T	36244884	G	T	36244884	3	4	275	1	0	0	0	0	1	0	0	0	13096	933	33	2	6245	2	RALGAPA1	14	36244884	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	205054	36244884	71104656	3791	29478										
BRMS1L	0	genome.wustl.edu	37	chr14	36333140	36333140	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttcagtcctgacaaaaaGaagccagttgttgtttcaga	8	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	36333140	36333140	G	T	SNP	BRMS1L	ENST00000216807	human	ensembl	69_37n	1	known	missense	c.603	p.K201N	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1L	HGNC	ENSG00000100916	563	0	0	417	156	27.23	-	-	-	T	36333140	G	T	36333140	3	4	275	1	0	0	0	0	1	0	0	0	1525	933	33	2	625	2	BRMS1L	14	36333140	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	88256	36333140	71016400	3792	29479										
SFTA3	0	genome.wustl.edu	37	chr14	36946216	36946216	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctttgtgacagcgtcgtgGgatgcagcagggctgtatgg	17	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	36946216	36946216	G	T	SNP	SFTA3	ENST00000518002	human	ensembl	69_37n	-1	known	missense	c.221	p.P74H	0.000	NULL	NULL	-	no_errors	SFTA3	HGNC	ENSG00000229415	266	1	0.37	210	28	11.76	-	-	-	T	36946216	G	T	36946216	3	4	275	1	0	0	0	0	1	0	0	0	14276	1232	43	4	71	4	SFTA3	14	36946216	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	613076	36946216	70403324	3793	29480										
CTAGE5	0	genome.wustl.edu	37	chr14	39796074	39796074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttctttaattaggctcacGaggcccagggaatcctctgg	10	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	39796074	39796074	G	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	missense	c.1694	p.R565Q	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	527	0	0	444	84	15.91	-	-	-	A	39796074	G	A	39796074	3	1	275	1	0	0	0	0	1	0	0	0	4026	1058	37	1	1788	1	CTAGE5	14	39796074	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2849858	39796074	67553466	3794	29481										
FAM179B	0	genome.wustl.edu	37	chr14	45473438	45473438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcttattatatctccaaAgaagtctcaagataattctg	4	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	45473438	45473438	A	C	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.2513	p.K838T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	207	0	0	148	27	15.43	-	-	-	C	45473438	A	C	45473438	3	2	275	1	0	0	0	0	1	0	0	0	5546	72	3	5	2527	5	FAM179B	14	45473438	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	5677364	45473438	61876102	3795	29482										
FAM179B	0	genome.wustl.edu	37	chr14	45475465	45475465	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggataaagatttggatcaaGaagaggttagaaccaaatat	10	3	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	45475465	45475465	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	nonsense	c.2899	p.E967*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	81	0	0	64	13	16.88	-	-	-	T	45475465	G	T	45475465	4	4	275	1	0	0	0	0	0	1	0	0	5546	943	33	2	2917	2	FAM179B	14	45475465	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2027	45475465	61874075	3796	29483										
FAM179B	0	genome.wustl.edu	37	chr14	45497438	45497438	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaaaagagaaaagaagaGaaagaactgtttcacaataa	8	4	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	45497438	45497438	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.3564	p.E1188D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	197	1	0.51	136	30	18.07	-	-	-	T	45497438	G	T	45497438	3	4	275	1	0	0	0	0	1	0	0	0	5546	933	33	2	3602	2	FAM179B	14	45497438	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21973	45497438	61852102	3797	29484										
FANCM	0	genome.wustl.edu	37	chr14	45665457	45665457	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttagctgggacacatacttCtcttagacttccgcaggaag	9	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	45665457	45665457	C	A	SNP	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	missense	c.5423	p.S1808Y	0.013	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	124	0	0	100	22	18.03	-	-	-	A	45665457	C	A	45665457	3	1	275	1	0	0	0	0	1	0	0	0	5717	913	32	2	5505	2	FANCM	14	45665457	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	168019	45665457	61684083	3798	29485										
MDGA2	0	genome.wustl.edu	37	chr14	47613280	47613280	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atactgtaccttaattcataCctgggtaaagaatggttcat	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	47613280	47613280	C	T	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	splice_site	c.792+1	e4+1	1.000	-	-	-	no_errors	MDGA2	HGNC	ENSG00000139915	214	0	0	138	49	26.2	-	-	-	T	47613280	C	T	47613280	5	4	275	1	0	0	0	0	0	0	1	0	9478	521	18	4	2340	4	MDGA2	14	47613280	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1947823	47613280	59736260	3799	29486										
MDGA2	0	genome.wustl.edu	37	chr14	47687339	47687339	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaatcctcaaagtctcattGaagacacttgagtcttggaa	8	8	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	47687339	47687339	G	T	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.480	p.F160L	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	272	0	0	137	29	17.47	-	-	-	T	47687339	G	T	47687339	3	4	275	1	0	0	0	0	1	0	0	0	9478	1281	45	2	2657	2	MDGA2	14	47687339	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74059	47687339	59662201	3800	29487										
C14orf182	0	genome.wustl.edu	37	chr14	50472229	50472229	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcaggcacctgaggccccGaagcagcagacacttaaata	10	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	50472229	50472229	G	A	SNP	C14orf182	ENST00000529902	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C14orf182	HGNC	ENSG00000214900	55	0	0	29	6	17.14	-	-	-	A	50472229	G	A	50472229	1	1	275	0	1	0	0	0	0	0	0	0	1777	1073	37	1		1	C14orf182	14	50472229	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2784890	50472229	56877311	3801	29488										
L2HGDH	0	genome.wustl.edu	37	chr14	50750613	50750613	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatacttcttgaaggactttCtttagccatttcaatacctt	4	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	50750613	50750613	C	A	SNP	L2HGDH	ENST00000267436	human	ensembl	69_37n	-1	known	nonsense	c.679	p.E227*	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	L2HGDH	HGNC	ENSG00000087299	192	0	0	135	26	16.15	-	-	-	A	50750613	C	A	50750613	4	1	275	1	0	0	0	0	0	1	0	0	8644	922	32	2	736	2	L2HGDH	14	50750613	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	278384	50750613	56598927	3802	29489										
CDKL1	0	genome.wustl.edu	37	chr14	50796868	50796868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatccaaagctggaaggatgCtgctgccagttagctggggt	14	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	50796868	50796868	C	T	SNP	CDKL1	ENST00000395834	human	ensembl	69_37n	-1	known	missense	c.1001	p.S334N	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL1	HGNC	ENSG00000100490	239	0	0	177	25	12.38	-	-	-	T	50796868	C	T	50796868	3	4	275	1	0	0	0	0	1	0	0	0	3182	797	28	4	79	4	CDKL1	14	50796868	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46255	50796868	56552672	3803	29490										
ATL1	0	genome.wustl.edu	37	chr14	51087316	51087316	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggatttgcttttacttgtaGaaatagatgatgaattcatc	8	4	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	51087316	51087316	G	T	SNP	ATL1	ENST00000357032	human	ensembl	69_37n	1	known	splice_site	c.863-1	e9-1	1.000	-	-	-	no_errors	ATL1	HGNC	ENSG00000198513	150	0	0	112	21	15.79	-	-	-	T	51087316	G	T	51087316	5	4	275	1	0	0	0	0	0	0	1	0	1110	956	33	2	896	2	ATL1	14	51087316	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	290448	51087316	56262224	3804	29491										
NIN	0	genome.wustl.edu	37	chr14	51204881	51204881	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgttagcaggagattgttCtttctgaaactgatcacact	8	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	51204881	51204881	C	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	nonsense	c.5752	p.E1918*	0.169	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	445	0	0	263	46	14.89	-	-	-	A	51204881	C	A	51204881	4	1	275	1	0	0	0	0	0	1	0	0	10489	922	32	2	817	2	NIN	14	51204881	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117565	51204881	56144659	3805	29492										
TRIM9	0	genome.wustl.edu	37	chr14	51446185	51446185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgggaccttgttgttcatCgttgataaaaaatgtcaagt	9	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	51446185	51446185	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	69_37n	-1	known	missense	c.2233	p.D745N	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	238	0	0	152	66	30.14	-	-	-	T	51446185	C	T	51446185	3	4	275	1	0	0	0	0	1	0	0	0	16645	884	31	1	150	1	TRIM9	14	51446185	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	241304	51446185	55903355	3806	29493										
FRMD6	0	genome.wustl.edu	37	chr14	52187057	52187057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggcagctcccacacctcaGgggtggagagtggcggcaaa	15	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52187057	52187057	G	T	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.1309	p.G437W	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	35	0	0	15	6	28.57	-	-	-	T	52187057	G	T	52187057	3	4	275	1	0	0	0	0	1	0	0	0	6103	1000	35	4	1323	4	FRMD6	14	52187057	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	740872	52187057	55162483	3807	29494										
NID2	0	genome.wustl.edu	37	chr14	52474621	52474621	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcagaattcttctgttttCtccatctaaagatgacgttt	6	8	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52474621	52474621	C	A	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	nonsense	c.3787	p.E1263*	0.978	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	310	0	0	216	32	12.9	-	-	-	A	52474621	C	A	52474621	4	1	275	1	0	0	0	0	0	1	0	0	10487	922	32	2	356	2	NID2	14	52474621	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	287564	52474621	54874919	3808	29495										
NID2	0	genome.wustl.edu	37	chr14	52481848	52481848	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccacacaccagcagaagtcGctctttccgtggcactgcag	9	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52481848	52481848	G	A	SNP	NID2	ENST00000556572	human	ensembl	69_37n	-1	novel	nonsense	c.979	p.R327*	0.996	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_LDLR_classB_rpt,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Thyroglobulin_1,superfamily_Green_fluorescent_prot-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NID2	HGNC	ENSG00000087303	98	0	0	33	16	32.65	-	-	-	A	52481848	G	A	52481848	4	1	275	1	0	0	0	0	0	1	0	0	10487	1078	38	1	985	1	NID2	14	52481848	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7227	52481848	54867692	3809	29496										
NID2	0	genome.wustl.edu	37	chr14	52505656	52505656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtttggttgattgcaccaAaagtcagagagtagtctctg	11	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52505656	52505656	A	G	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.2066	p.F689S	0.000	pfam_G2_nidogen/fibulin_G2F,superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	366	0	0	259	100	27.78	-	-	-	G	52505656	A	G	52505656	3	3	275	1	0	0	0	0	1	0	0	0	10487	14	1	5	2117	5	NID2	14	52505656	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	23808	52505656	54843884	3810	29497										
NID2	0	genome.wustl.edu	37	chr14	52527017	52527017	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggccgttggcaggataaaGaaagagggcgtagctatcag	15	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52527017	52527017	G	T	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.592	p.L198I	1.000	pfam_Nidogen_extracell_dom,smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	142	0	0	80	29	26.61	-	-	-	T	52527017	G	T	52527017	3	4	275	1	0	0	0	0	1	0	0	0	10487	942	33	2	3615	2	NID2	14	52527017	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21361	52527017	54822523	3811	29498										
PTGDR	0	genome.wustl.edu	37	chr14	52741596	52741596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcagatctccagtatttCggatattttttcacaagatt	5	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52741596	52741596	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	69_37n	1	known	missense	c.994	p.R332W	1.000	prints_Pglndn_D_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229	165	0	0	101	30	22.73	-	-	-	T	52741596	C	T	52741596	3	4	275	1	0	0	0	0	1	0	0	0	12821	875	31	1	1000	1	PTGDR	14	52741596	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	214579	52741596	54607944	3812	29499										
PTGER2	0	genome.wustl.edu	37	chr14	52793942	52793942	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctttgcttcttacagattTttgcatatatgaatgaaacc	5	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52793942	52793942	T	G	SNP	PTGER2	ENST00000245457	human	ensembl	69_37n	1	known	missense	c.847	p.F283V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384	204	0	0	152	53	25.85	-	-	-	G	52793942	T	G	52793942	3	3	275	1	0	0	0	0	1	0	0	0	12824	1841	64	5	853	5	PTGER2	14	52793942	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	52346	52793942	54555598	3813	29500										
TXNDC16	0	genome.wustl.edu	37	chr14	52905953	52905953	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctagtcctgcttctaatttCttcagccacaatacaaggtt	5	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	52905953	52905953	C	A	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	missense	c.2163	p.K721N	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	346	1	0.29	198	30	13.16	-	-	-	A	52905953	C	A	52905953	3	1	275	1	0	0	0	0	1	0	0	0	16892	912	32	2	322	2	TXNDC16	14	52905953	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	112011	52905953	54443587	3814	29501										
TXNDC16	0	genome.wustl.edu	37	chr14	53009142	53009142	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctaacagcctcattcagttCttcaagaaatacagatgttc	5	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53009142	53009142	C	A	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	nonsense	c.190	p.E64*	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	125	0	0	136	35	20.47	-	-	-	A	53009142	C	A	53009142	4	1	275	1	0	0	0	0	0	1	0	0	16892	922	32	2	2359	2	TXNDC16	14	53009142	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103189	53009142	54340398	3815	29502										
FERMT2	0	genome.wustl.edu	37	chr14	53327632	53327632	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accataatcatttctattttAaatttaaatttcactactgg	2	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53327632	53327632	A	G	SNP	FERMT2	ENST00000557255	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	FERMT2	HGNC	ENSG00000073712	117	0	0	71	14	16.28	-	-	-	G	53327632	A	G	53327632	1	3	275	0	1	0	0	0	0	0	0	0	5864	377	13	5		5	FERMT2	14	53327632	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	318490	53327632	54021908	3816	29503										
FERMT2	0	genome.wustl.edu	37	chr14	53331208	53331208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctctggtattaactgagGatctgggtttaaatgctgca	11	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53331208	53331208	G	A	SNP	FERMT2	ENST00000343279	human	ensembl	69_37n	-1	known	missense	c.1513	p.P505S	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712	411	0	0	338	38	10.11	-	-	-	A	53331208	G	A	53331208	3	1	275	1	0	0	0	0	1	0	0	0	5864	1174	41	2	582	2	FERMT2	14	53331208	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3576	53331208	54018332	3817	29504										
DDHD1	0	genome.wustl.edu	37	chr14	53518604	53518604	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattacattttccggaaaaaGaagttgtgggagattaaaga	10	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53518604	53518604	G	T	SNP	DDHD1	ENST00000323669	human	ensembl	69_37n	-1	known	missense	c.2479	p.L827I	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	240	1	0.41	156	60	27.78	-	-	-	T	53518604	G	T	53518604	3	4	275	1	0	0	0	0	1	0	0	0	4357	942	33	2	231	2	DDHD1	14	53518604	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	187396	53518604	53830936	3818	29505										
DDHD1	0	genome.wustl.edu	37	chr14	53529767	53529767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcaactgttcatacagccGaactggattccagccagtca	8	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53529767	53529767	G	A	SNP	DDHD1	ENST00000323669	human	ensembl	69_37n	-1	known	missense	c.1660	p.R554W	0.973	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	164	0	0	75	37	33.04	-	-	-	A	53529767	G	A	53529767	3	1	275	1	0	0	0	0	1	0	0	0	4357	1057	37	1	1070	1	DDHD1	14	53529767	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11163	53529767	53819773	3819	29506										
DDHD1	0	genome.wustl.edu	37	chr14	53560117	53560117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagatatacttcatccacaCtgtgccagtccacatggttt	6	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	53560117	53560117	C	T	SNP	DDHD1	ENST00000323669	human	ensembl	69_37n	-1	known	missense	c.1058	p.S353N	1.000	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	304	0	0	158	52	24.76	-	-	-	T	53560117	C	T	53560117	3	4	275	1	0	0	0	0	1	0	0	0	4357	565	20	4	1688	4	DDHD1	14	53560117	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30350	53560117	53789423	3820	29507										
GCH1	0	genome.wustl.edu	37	chr14	55309825	55309825	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatacttagaaaaatatcTtataagattaaaaaaaagaa	4	2	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	55309825	55309825	T	G	SNP	GCH1	ENST00000254299	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCH1	HGNC	ENSG00000131979	146	0	0	66	41	38.32	-	-	-	G	55309825	T	G	55309825	1	3	275	0	1	0	0	0	0	0	0	0	6341	1624	56	5		5	GCH1	14	55309825	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1749708	55309825	52039715	3821	29508										
FBXO34	0	genome.wustl.edu	37	chr14	55817787	55817787	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgctagctagctgttcaAaaaactgcacaaactcacct	5	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	55817787	55817787	A	C	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.679	p.K227Q	0.987	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	182	0	0	155	27	14.84	-	-	-	C	55817787	A	C	55817787	3	2	275	1	0	0	0	0	1	0	0	0	5790	15	1	5	681	5	FBXO34	14	55817787	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	507962	55817787	51531753	3822	29509										
FBXO34	0	genome.wustl.edu	37	chr14	55817821	55817821	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacctgcaattgtgaggtTttctggccaatccagaggtg	11	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	55817821	55817821	T	G	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.713	p.F238C	0.062	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	171	0	0	141	31	18.02	-	-	-	G	55817821	T	G	55817821	3	3	275	1	0	0	0	0	1	0	0	0	5790	1841	64	5	715	5	FBXO34	14	55817821	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	34	55817821	51531719	3823	29510										
TBPL2	0	genome.wustl.edu	37	chr14	55903513	55903513	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgtggactttggctttcaGaattttcttcagtttcgtgt	9	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	55903513	55903513	G	A	SNP	TBPL2	ENST00000247219	human	ensembl	69_37n	-1	known	missense	c.374	p.S125F	0.248	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521	398	0	0	281	32	10.19	-	-	-	A	55903513	G	A	55903513	3	1	275	1	0	0	0	0	1	0	0	0	15741	942	33	2	777	2	TBPL2	14	55903513	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	85692	55903513	51446027	3824	29511										
C14orf101	0	genome.wustl.edu	37	chr14	57083910	57083910	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttttgtagggacagacaGaatccatcattagtatggct	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	57083910	57083910	G	T	SNP	C14orf101	ENST00000261556	human	ensembl	69_37n	1	known	missense	c.951	p.Q317H	0.009	NULL	pfam_DUF2723	-	no_errors	C14orf101	HGNC	ENSG00000070269	252	0	0	149	41	21.58	-	-	-	T	57083910	G	T	57083910	3	4	275	1	0	0	0	0	1	0	0	0	1746	933	33	2	985	2	C14orf101	14	57083910	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1180397	57083910	50265630	3825	29512										
OTX2	0	genome.wustl.edu	37	chr14	57268613	57268613	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catatccctgggtggaaagaGaagctggggactgattgaga	15	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	57268613	57268613	G	T	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	missense	c.734	p.S245Y	1.000	prints_Otx2_TF	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	240	0	0	131	17	11.49	-	-	-	T	57268613	G	T	57268613	3	4	275	1	0	0	0	0	1	0	0	0	11394	942	33	2	163	2	OTX2	14	57268613	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184703	57268613	50080927	3826	29513										
EXOC5	0	genome.wustl.edu	37	chr14	57675371	57675371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcagatctataatcagcacGaagttgtacgaaggagtgaa	12	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	57675371	57675371	G	A	SNP	EXOC5	ENST00000413566	human	ensembl	69_37n	-1	known	missense	c.2083	p.R695C	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367	223	0	0	130	25	16.13	-	-	-	A	57675371	G	A	57675371	3	1	275	1	0	0	0	0	1	0	0	0	5343	1058	37	1	47	1	EXOC5	14	57675371	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406758	57675371	49674169	3827	29514										
C14orf37	0	genome.wustl.edu	37	chr14	58599889	58599889	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggctcccatcttcttgAcagctgagtaacaccaggaa	9	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	58599889	58599889	A	G	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.1540	p.S514P	0.022	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	122	0	0	89	10	10.1	-	-	-	G	58599889	A	G	58599889	3	3	275	1	0	0	0	0	1	0	0	0	1783	275	10	5	808	5	C14orf37	14	58599889	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	924518	58599889	48749651	3828	29515										
ACTR10	0	genome.wustl.edu	37	chr14	58698937	58698937	+	Nonsense_Mutation	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacttggcactaagacatttCgaattcatactccacctgca							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	58698937	58698937	C	T	SNP	ACTR10	ENST00000254286	human	ensembl	69_37n	1	known	nonsense	c.1024	p.R342*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR10	HGNC	ENSG00000131966	172	0	0	119	47	27.98	-	-	-	T	58698937	C	T	58698937	4	4	275	1	0	0	0	0	0	1	0	0	208	876	31	1	1070	1	ACTR10	14	58698937	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	99048	58698937	48650603	3829	29516	247	2								
ACTR10	0	genome.wustl.edu	37	chr14	58698938	58698938	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttggcactaagacatttcGaattcatactccacctgcaa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	58698938	58698938	G	A	SNP	ACTR10	ENST00000254286	human	ensembl	69_37n	1	known	missense	c.1025	p.R342Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR10	HGNC	ENSG00000131966	172	0	0	144	22	13.17	-	-	-	A	58698938	G	A	58698938	3	1	275	1	0	0	0	0	1	0	0	0	208	1058	37	1	1071	1	ACTR10	14	58698938	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1	58698938	48650602	3830	29517	247	2								
ARID4A	0	genome.wustl.edu	37	chr14	58814545	58814545	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgaacctgaggaaaatatCgattcaaacagtgaaagtga	10	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	58814545	58814545	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	69_37n	1	known	silent	c.1353	p.I451	0.075	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219	280	0	0	209	87	29.39	-	-	-	T	58814545	C	T	58814545	2	4	275	1	0	0	0	0	0	0	0	1	921	874	31	1		1	ARID4A	14	58814545	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115607	58814545	48534995	3831	29518										
KIAA0586	0	genome.wustl.edu	37	chr14	58899124	58899124	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaaatgacatcttcatttCtcagtatacaatgggacaga	7	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	58899124	58899124	C	A	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	missense	c.314	p.S105Y	1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	141	0	0	115	18	13.53	-	-	-	A	58899124	C	A	58899124	3	1	275	1	0	0	0	0	1	0	0	0	8238	913	32	2	373	2	KIAA0586	14	58899124	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	84579	58899124	48450416	3832	29519										
DAAM1	0	genome.wustl.edu	37	chr14	59806850	59806850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttaaagttaaagagctttCggtgattgatggtcggagag	13	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	59806850	59806850	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.2057	p.S686L	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	366	0	0	267	34	11.22	-	-	-	T	59806850	C	T	59806850	3	4	275	1	0	0	0	0	1	0	0	0	4247	893	31	1	2119	1	DAAM1	14	59806850	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	907726	59806850	47542690	3833	29520										
C14orf39	0	genome.wustl.edu	37	chr14	60921799	60921799	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctagaagtataactcataaGaaaagaaagtccaggggatt	9	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	60921799	60921799	G	T	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	missense	c.1423	p.L475I	0.832	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	235	0	0	111	45	28.85	-	-	-	T	60921799	G	T	60921799	3	4	275	1	0	0	0	0	1	0	0	0	1784	942	33	2	352	2	C14orf39	14	60921799	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1114949	60921799	46427741	3834	29521										
C14orf39	0	genome.wustl.edu	37	chr14	60923745	60923745	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagacgttcgtggaaaattCtcagctctctcttctacttc	6	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	60923745	60923745	C	A	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	missense	c.1248	p.E416D	0.904	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	228	0	0	130	16	10.96	-	-	-	A	60923745	C	A	60923745	3	1	275	1	0	0	0	0	1	0	0	0	1784	912	32	2	531	2	C14orf39	14	60923745	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1946	60923745	46425795	3835	29522										
C14orf39	0	genome.wustl.edu	37	chr14	60938454	60938454	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catatataatcatgatacatTtctctgttaaaattaaaaga	3	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	60938454	60938454	T	C	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	silent	c.327	p.E109	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	260	0	0	164	72	30.38	-	-	-	C	60938454	T	C	60938454	2	2	275	1	0	0	0	0	0	0	0	1	1784	1838	64	5		5	C14orf39	14	60938454	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	14709	60938454	46411086	3836	29523										
C14orf39	0	genome.wustl.edu	37	chr14	60951607	60951607	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagctacttactattaattCtttgaatcatctcttcttta	2	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	60951607	60951607	C	A	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	missense	c.98	p.R33I	0.995	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	559	0	0	242	69	22.19	-	-	-	A	60951607	C	A	60951607	3	1	275	1	0	0	0	0	1	0	0	0	1784	913	32	2	1729	2	C14orf39	14	60951607	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13153	60951607	46397933	3837	29524										
SIX6	0	genome.wustl.edu	37	chr14	60976412	60976412	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagcacactaccaggaggCtgagaagctgcgtggaagac	14	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	60976412	60976412	C	A	SNP	SIX6	ENST00000327720	human	ensembl	69_37n	1	known	missense	c.296	p.A99D	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX6	HGNC	ENSG00000184302	79	0	0	18	11	37.93	-	-	-	A	60976412	C	A	60976412	3	1	275	1	0	0	0	0	1	0	0	0	14440	797	28	4	298	4	SIX6	14	60976412	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24805	60976412	46373128	3838	29525										
HIF1A	0	genome.wustl.edu	37	chr14	62207327	62207327	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgaagacacagaagcaaaGaacccattttctactcaggt	8	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	62207327	62207327	G	T	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	missense	c.1713	p.K571N	1.000	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	139	0	0	126	25	16.56	-	-	-	T	62207327	G	T	62207327	3	4	275	1	0	0	0	0	1	0	0	0	7154	933	33	2	1683	2	HIF1A	14	62207327	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1230915	62207327	45142213	3839	29526										
HIF1A	0	genome.wustl.edu	37	chr14	62207493	62207493	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacacagatttagacttggaGatgttagctccctatatccc	8	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	62207493	62207493	G	T	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	missense	c.1752	p.E584D	1.000	pfam_HIF_alpha_subunit	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	132	0	0	107	24	18.32	-	-	-	T	62207493	G	T	62207493	3	4	275	1	0	0	0	0	1	0	0	0	7154	933	33	2	1726	2	HIF1A	14	62207493	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166	62207493	45142047	3840	29527										
SYNE2	0	genome.wustl.edu	37	chr14	64450501	64450501	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacaggatcagcccacttTtgacaattctggaaatattc	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64450501	64450501	T	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.2048	p.F683S	0.007	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	92	0	0	84	11	11.58	-	-	-	C	64450501	T	C	64450501	3	2	275	1	0	0	0	0	1	0	0	0	15538	1841	64	5	2114	5	SYNE2	14	64450501	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2243008	64450501	42899039	3841	29528										
SYNE2	0	genome.wustl.edu	37	chr14	64465648	64465648	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggtatgatacatacagaGatattcttgaacaccacctg	7	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64465648	64465648	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.3370	p.D1124Y	0.004	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	187	0	0	100	109	52.15	-	-	-	T	64465648	G	T	64465648	3	4	275	1	0	0	0	0	1	0	0	0	15538	942	33	2	3472	2	SYNE2	14	64465648	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15147	64465648	42883892	3842	29529										
SYNE2	0	genome.wustl.edu	37	chr14	64491915	64491915	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgggtttactgaagaagaaGaaataataatggaagcaaca	10	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64491915	64491915	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	nonsense	c.6028	p.E2010*	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	111	1	0.89	84	13	13.4	-	-	-	T	64491915	G	T	64491915	4	4	275	1	0	0	0	0	0	1	0	0	15538	943	33	2	6186	2	SYNE2	14	64491915	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26267	64491915	42857625	3843	29530										
SYNE2	0	genome.wustl.edu	37	chr14	64516497	64516497	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttactttgaagaaaaacaaaGaaagccaatattgtgtcctc	6	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64516497	64516497	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	nonsense	c.7546	p.E2516*	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	202	0	0	168	30	15.15	-	-	-	T	64516497	G	T	64516497	4	4	275	1	0	0	0	0	0	1	0	0	15538	943	33	2	7728	2	SYNE2	14	64516497	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24582	64516497	42833043	3844	29531										
SYNE2	0	genome.wustl.edu	37	chr14	64591863	64591863	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagatacccaacaactgaaGaactgaaaacctataccacc	4	12	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64591863	64591863	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	nonsense	c.13489	p.E4497*	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	221	0	0	204	31	13.19	-	-	-	T	64591863	G	T	64591863	4	4	275	1	0	0	0	0	0	1	0	0	15538	943	33	2	13767	2	SYNE2	14	64591863	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75366	64591863	42757677	3845	29532										
SYNE2	0	genome.wustl.edu	37	chr14	64608671	64608671	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttacagcttcaaatggaGaaattgccgtctcgtaaagc	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64608671	64608671	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.15171	p.E5057D	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	193	0	0	119	49	29.17	-	-	-	T	64608671	G	T	64608671	3	4	275	1	0	0	0	0	1	0	0	0	15538	933	33	2	15493	2	SYNE2	14	64608671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16808	64608671	42740869	3846	29533										
ESR2	0	genome.wustl.edu	37	chr14	64724059	64724059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaagagccgcacttggtCgaacaggctgagctccacaa	10	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64724059	64724059	C	T	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	missense	c.976	p.D326N	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	179	0	0	123	36	22.64	-	-	-	T	64724059	C	T	64724059	3	4	275	1	0	0	0	0	1	0	0	0	5294	884	31	1	718	1	ESR2	14	64724059	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115388	64724059	42625481	3847	29534										
ESR2	0	genome.wustl.edu	37	chr14	64735534	64735534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacttcaccattcccacttCgtaacacttccgaagtcggc	5	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	64735534	64735534	C	T	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	missense	c.631	p.E211K	1.000	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	417	0	0	308	165	34.81	-	-	-	T	64735534	C	T	64735534	3	4	275	1	0	0	0	0	1	0	0	0	5294	893	31	1	1071	1	ESR2	14	64735534	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	11475	64735534	42614006	3848	29535										
MAX	0	genome.wustl.edu	37	chr14	65560476	65560476	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgcaaactgtgaaagctgtCtttgatgtggtccctacgtt	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	65560476	65560476	C	A	SNP	MAX	ENST00000358664	human	ensembl	69_37n	-1	known	missense	c.121	p.D41Y	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MAX	HGNC	ENSG00000125952	401	0	0	174	94	35.07	-	-	-	A	65560476	C	A	65560476	3	1	275	1	0	0	0	0	1	0	0	0	9410	913	32	2	713	2	MAX	14	65560476	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	824942	65560476	41789064	3849	29536										
FUT8	0	genome.wustl.edu	37	chr14	66135964	66135964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctttctccctgacagaatCccaaggactgcagcaaagcc	7	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	66135964	66135964	C	A	SNP	FUT8	ENST00000360689	human	ensembl	69_37n	1	known	missense	c.601	p.P201T	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170	237	0	0	174	21	10.77	-	-	-	A	66135964	C	A	66135964	3	1	275	1	0	0	0	0	1	0	0	0	6159	855	30	2	718	2	FUT8	14	66135964	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	575488	66135964	41213576	3850	29537										
GPHN	0	genome.wustl.edu	37	chr14	67243228	67243228	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatagtaccagatgaaataGaagaaatcaaggtatagtat	9	3	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	67243228	67243228	G	T	SNP	GPHN	ENST00000478722	human	ensembl	69_37n	1	known	nonsense	c.190	p.E64*	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	pfam_Mopterin-bd,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723	312	0	0	243	81	25	-	-	-	T	67243228	G	T	67243228	4	4	275	1	0	0	0	0	0	1	0	0	6660	943	33	2	200	2	GPHN	14	67243228	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1107264	67243228	40106312	3851	29538										
MPP5	0	genome.wustl.edu	37	chr14	67790494	67790494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccttcacaagaaagacttCgggcattattggccaaagaa	8	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	67790494	67790494	C	T	SNP	MPP5	ENST00000261681	human	ensembl	69_37n	1	known	missense	c.1816	p.R606W	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP5	HGNC	ENSG00000072415	193	1	0.52	92	31	25.2	-	-	-	T	67790494	C	T	67790494	3	4	275	1	0	0	0	0	1	0	0	0	9809	875	31	1	1862	1	MPP5	14	67790494	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	547266	67790494	39559046	3852	29539										
ATP6V1D	0	genome.wustl.edu	37	chr14	67810109	67810109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgttcaatggcatttacaCgcctgttggttatcttaata	7	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	67810109	67810109	C	T	SNP	ATP6V1D	ENST00000216442	human	ensembl	69_37n	-1	known	missense	c.503	p.R168H	1.000	pfam_V_ATPase_D,tigrfam_V_ATPase_D	pfam_V_ATPase_D,tigrfam_V_ATPase_D	-	no_errors	ATP6V1D	HGNC	ENSG00000100554	192	0	0	124	29	18.95	-	-	-	T	67810109	C	T	67810109	3	4	275	1	0	0	0	0	1	0	0	0	1186	536	19	1	252	1	ATP6V1D	14	67810109	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19615	67810109	39539431	3853	29540										
ARG2	0	genome.wustl.edu	37	chr14	68087650	68087650	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggtcccgctgccataagaGaagctggcttgatgaaaagg	13	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	68087650	68087650	G	T	SNP	ARG2	ENST00000261783	human	ensembl	69_37n	1	known	nonsense	c.151	p.E51*	1.000	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181	973	0	0	540	218	28.76	-	-	-	T	68087650	G	T	68087650	4	4	275	1	0	0	0	0	0	1	0	0	860	943	33	2	157	2	ARG2	14	68087650	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	277541	68087650	39261890	3854	29541										
RDH12	0	genome.wustl.edu	37	chr14	68191965	68191965	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcctttgctgagggctttCtggcaggtgaggtcctgatg	16	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	68191965	68191965	C	A	SNP	RDH12	ENST00000267502	human	ensembl	69_37n	1	known	missense	c.337	p.L113M	0.999	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH12	HGNC	ENSG00000139988	119	0	0	65	38	36.89	-	-	-	A	68191965	C	A	68191965	3	1	275	1	0	0	0	0	1	0	0	0	13274	912	32	2	347	2	RDH12	14	68191965	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	104315	68191965	39157575	3855	29542										
EXD2	0	genome.wustl.edu	37	chr14	69695536	69695536	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttcctctgttgcaggtaAatttggaaggcaaagccagc	11	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	69695536	69695536	A	C	SNP	EXD2	ENST00000312994	human	ensembl	69_37n	1	known	missense	c.337	p.N113H	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD2	HGNC	ENSG00000081177	133	0	0	100	37	27.01	-	-	-	C	69695536	A	C	69695536	3	2	275	1	0	0	0	0	1	0	0	0	5334	29	1	5		5	EXD2	14	69695536	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1503571	69695536	37654004	3856	29543										
PCNX	0	genome.wustl.edu	37	chr14	71576678	71576678	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttattataaagacatttCtttttccctctcaattccaa	2	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	71576678	71576678	C	A	SNP	PCNX	ENST00000556272	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.870	-	-	-	no_errors	PCNX	HGNC	ENSG00000100731	170	0	0	134	19	12.34	-	-	-	A	71576678	C	A	71576678	1	1	275	0	1	0	0	0	0	0	0	0	11664	928	32	2		2	PCNX	14	71576678	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1881142	71576678	35772862	3857	29544										
SIPA1L1	0	genome.wustl.edu	37	chr14	72055816	72055816	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagatgataaaagcaatgaGcttgtaatgagctgtccata	11	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	72055816	72055816	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.1227	p.E409	0.321	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	520	0	0	291	41	12.28	-	-	-	A	72055816	G	A	72055816	2	1	275	1	0	0	0	0	0	0	0	1	14418	962	34	4		4	SIPA1L1	14	72055816	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	479138	72055816	35293724	3858	29545										
SIPA1L1	0	genome.wustl.edu	37	chr14	72191548	72191548	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgaatcacagaagagttTtaaggtacaagacagagctc	9	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	72191548	72191548	T	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.4673	p.F1558S	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	82	0	0	49	10	16.95	-	-	-	C	72191548	T	C	72191548	3	2	275	1	0	0	0	0	1	0	0	0	14418	1841	64	5	4735	5	SIPA1L1	14	72191548	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	135732	72191548	35157992	3859	29546										
RBM25	0	genome.wustl.edu	37	chr14	73574558	73574558	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagctaaacgactaaaaGaattcttagaagactatgat	7	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	73574558	73574558	G	T	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	nonsense	c.1492	p.E498*	1.000	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	445	1	0.22	375	113	23.16	-	-	-	T	73574558	G	T	73574558	4	4	275	1	0	0	0	0	0	1	0	0	13208	943	33	2	1538	2	RBM25	14	73574558	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1383010	73574558	33774982	3860	29547										
NUMB	0	genome.wustl.edu	37	chr14	73749116	73749116	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgtcactggtttggtcatCggagcagatgagaaggggtc	15	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	73749116	73749116	C	T	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	silent	c.1047	p.P349	0.375	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	289	0	0	220	38	14.73	-	-	-	T	73749116	C	T	73749116	2	4	275	1	0	0	0	0	0	0	0	1	10824	871	31	1		1	NUMB	14	73749116	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	174558	73749116	33600424	3861	29548										
C14orf43	0	genome.wustl.edu	37	chr14	74203782	74203782	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcttgtgctcagcagggttCtgttcaggacccttcccgtc	12	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	74203782	74203782	C	A	SNP	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	missense	c.1668	p.Q556H	0.980	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	106	0	0	84	10	10.64	-	-	-	A	74203782	C	A	74203782	3	1	275	1	0	0	0	0	1	0	0	0	1786	912	32	2	1509	2	C14orf43	14	74203782	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	454666	74203782	33145758	3862	29549										
ALDH6A1	0	genome.wustl.edu	37	chr14	74532021	74532021	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgtctccagaaccacaaGaactggaccaaaaatctcct	5	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	74532021	74532021	G	T	SNP	ALDH6A1	ENST00000553458	human	ensembl	69_37n	-1	known	missense	c.1267	p.L423I	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	-	no_errors	ALDH6A1	HGNC	ENSG00000119711	190	1	0.52	133	56	29.63	-	-	-	T	74532021	G	T	74532021	3	4	275	1	0	0	0	0	1	0	0	0	503	942	33	2	352	2	ALDH6A1	14	74532021	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	328239	74532021	32817519	3863	29550										
KIAA0317	0	genome.wustl.edu	37	chr14	75142432	75142432	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatagcagtacaccttcttCggtttcttcaccttctcagg	6	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	75142432	75142432	C	T	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	silent	c.1050	p.P350	0.052	NULL	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	120	0	0	77	29	27.1	-	-	-	T	75142432	C	T	75142432	2	4	275	1	0	0	0	0	0	0	0	1	8219	871	31	1		1	KIAA0317	14	75142432	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	610411	75142432	32207108	3864	29551										
PROX2	0	genome.wustl.edu	37	chr14	75323650	75323650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggatgtaataaaactcacGaaagttgctgaaccacttga	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	75323650	75323650	G	A	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.1462	p.R488C	1.000	pfam_Prox1,superfamily_Homeodomain-like	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	119	0	0	97	59	37.82	-	-	-	A	75323650	G	A	75323650	3	1	275	1	0	0	0	0	1	0	0	0	12642	1058	37	1	324	1	PROX2	14	75323650	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181218	75323650	32025890	3865	29552										
PROX2	0	genome.wustl.edu	37	chr14	75329735	75329735	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggaggtgagggctcgcttCtaccctctgccacctgcccc	11	17	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	75329735	75329735	C	T	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.803	p.R268K	0.000	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	87	0	0	80	16	16.67	-	-	-	T	75329735	C	T	75329735	3	4	275	1	0	0	0	0	1	0	0	0	12642	913	32	2	991	2	PROX2	14	75329735	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6085	75329735	32019805	3866	29553										
PGF	0	genome.wustl.edu	37	chr14	75413099	75413099	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctttccggcttcatcttCtcccgcagaggcctagggaa	9	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	75413099	75413099	C	A	SNP	PGF	ENST00000405431	human	ensembl	69_37n	-1	known	missense	c.621	p.E207D	0.957	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PGF	HGNC	ENSG00000119630	136	0	0	79	14	15.05	-	-	-	A	75413099	C	A	75413099	3	1	275	1	0	0	0	0	1	0	0	0	11862	912	32	2	119	2	PGF	14	75413099	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83364	75413099	31936441	3867	29554										
MLH3	0	genome.wustl.edu	37	chr14	75514890	75514890	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagagctatgttccaggaaaGattttttatgtttctcattt	7	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	75514890	75514890	G	T	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.1469	p.S490Y	0.000	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	73	0	0	44	5	10.2	-	-	-	T	75514890	G	T	75514890	3	4	275	1	0	0	0	0	1	0	0	0	9689	942	33	2	2940	2	MLH3	14	75514890	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101791	75514890	31834650	3868	29555										
TTLL5	0	genome.wustl.edu	37	chr14	76198513	76198513	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctagaacttgattaatttCtcttgaacttgaaagattct	5	7	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	76198513	76198513	C	A	SNP	TTLL5	ENST00000555422	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	TTLL5	HGNC	ENSG00000119685	118	0	0	66	13	16.46	-	-	-	A	76198513	C	A	76198513	1	1	275	0	1	0	0	0	0	0	0	0	16827	928	32	2		2	TTLL5	14	76198513	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	683623	76198513	31151027	3869	29556										
TTLL5	0	genome.wustl.edu	37	chr14	76245960	76245960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgactttttatacccaaaaGaacaagtctgctagtgtctt	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	76245960	76245960	G	T	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.2430	p.K810N	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	468	0	0	409	48	10.5	-	-	-	T	76245960	G	T	76245960	3	4	275	1	0	0	0	0	1	0	0	0	16827	933	33	2	2520	2	TTLL5	14	76245960	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	47447	76245960	31103580	3870	29557										
C14orf118	0	genome.wustl.edu	37	chr14	76647162	76647162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgccgatgcttctcaccGaaggtgttcaccagcacact	8	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	76647162	76647162	G	A	SNP	C14orf118	ENST00000261530	human	ensembl	69_37n	1	known	missense	c.1163	p.R388Q	1.000	NULL	NULL	-	no_errors	C14orf118	HGNC	ENSG00000089916	542	0	0	381	55	12.61	-	-	-	A	76647162	G	A	76647162	3	1	275	1	0	0	0	0	1	0	0	0	1753	1058	37	1	1233	1	C14orf118	14	76647162	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	401202	76647162	30702378	3871	29558										
ESRRB	0	genome.wustl.edu	37	chr14	76957920	76957920	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtacgctgaggactacatCatggatgaggagcactcccg	13	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	76957920	76957920	C	A	SNP	ESRRB	ENST00000380887	human	ensembl	69_37n	1	known	silent	c.918	p.I306	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715	50	0	0	39	6	13.33	-	-	-	A	76957920	C	A	76957920	2	1	275	1	0	0	0	0	0	0	0	1	5298	816	29	2		2	ESRRB	14	76957920	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	310758	76957920	30391620	3872	29559										
VASH1	0	genome.wustl.edu	37	chr14	77242408	77242408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagccgcccgccttccgcaCgctcagcgagctcgtgctgg	12	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	77242408	77242408	C	T	SNP	VASH1	ENST00000167106	human	ensembl	69_37n	1	known	missense	c.704	p.T235M	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246	17	0	0	13	5	27.78	-	-	-	T	77242408	C	T	77242408	3	4	275	1	0	0	0	0	1	0	0	0	17222	536	19	1	722	1	VASH1	14	77242408	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	284488	77242408	30107132	3873	29560										
C14orf166B	0	genome.wustl.edu	37	chr14	77297635	77297635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcctgtctcctacttcattCggaacatggaggagtcctac	9	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	77297635	77297635	C	T	SNP	C14orf166B	ENST00000393774	human	ensembl	69_37n	1	known	missense	c.307	p.R103W	0.795	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	C14orf166B	HGNC	ENSG00000100565	183	0	0	125	19	13.19	-	-	-	T	77297635	C	T	77297635	3	4	275	1	0	0	0	0	1	0	0	0	1769	875	31	1	317	1	C14orf166B	14	77297635	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	55227	77297635	30051905	3874	29561										
ZDHHC22	0	genome.wustl.edu	37	chr14	77605563	77605563	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcccactcaccggagaaGaactggctgatggaggtggg	16	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	77605563	77605563	G	T	SNP	ZDHHC22	ENST00000319374	human	ensembl	69_37n	-1	known	missense	c.519	p.F173L	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_SSD,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC22	HGNC	ENSG00000177108	32	0	0	23	7	23.33	-	-	-	T	77605563	G	T	77605563	3	4	275	1	0	0	0	0	1	0	0	0	17709	933	33	2	280	2	ZDHHC22	14	77605563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	307928	77605563	29743977	3875	29562										
SPTLC2	0	genome.wustl.edu	37	chr14	77978689	77978689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccagtagaggtaccaaccGatgacgggaatacttcagct	11	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	77978689	77978689	G	A	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.1627	p.R543W	0.998	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	411	0	0	339	57	14.39	-	-	-	A	77978689	G	A	77978689	3	1	275	1	0	0	0	0	1	0	0	0	15215	1057	37	1	65	1	SPTLC2	14	77978689	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	373126	77978689	29370851	3876	29563										
NRXN3	0	genome.wustl.edu	37	chr14	79117588	79117588	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgctgggctcggacgacttCttctatgtaggaggaagccc	13	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	79117588	79117588	C	A	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.1134	p.F378L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	508	1	0.2	494	72	12.72	-	-	-	A	79117588	C	A	79117588	3	1	275	1	0	0	0	0	1	0	0	0	10740	912	32	2	23	2	NRXN3	14	79117588	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1138899	79117588	28231952	3877	29564										
TSHR	0	genome.wustl.edu	37	chr14	81610385	81610385	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgttagcaactccaaaatCttgctggtactcttctatcc	5	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	81610385	81610385	C	T	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	silent	c.1983	p.I661	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	342	0	0	242	42	14.79	-	-	-	T	81610385	C	T	81610385	2	4	275	1	0	0	0	0	0	0	0	1	16718	903	32	2		2	TSHR	14	81610385	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2492797	81610385	25739155	3878	29565										
KCNK10	0	genome.wustl.edu	37	chr14	88693721	88693721	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatgacacagtactcactcGaaagaccttctccactcttg	5	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	88693721	88693721	G	T	SNP	KCNK10	ENST00000312350	human	ensembl	69_37n	-1	known	silent	c.679	p.R227	1.000	prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl_TRAAK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433	155	1	0.64	93	37	28.46	-	-	-	T	88693721	G	T	88693721	2	4	275	1	0	0	0	0	0	0	0	1	8113	1066	37	3		3	KCNK10	14	88693721	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7083336	88693721	18655819	3879	29566										
KCNK13	0	genome.wustl.edu	37	chr14	90651281	90651281	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggcccgggacaatgaattCtcagggggggtgggagcctt	17	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	90651281	90651281	C	A	SNP	KCNK13	ENST00000282146	human	ensembl	69_37n	1	known	missense	c.1161	p.F387L	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315	31	0	0	13	4	23.53	-	-	-	A	90651281	C	A	90651281	3	1	275	1	0	0	0	0	1	0	0	0	8115	912	32	2	1167	2	KCNK13	14	90651281	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1957560	90651281	16698259	3880	29567										
PSMC1	0	genome.wustl.edu	37	chr14	90731485	90731485	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaagcctcctaagggggtCattctctatggtccacctgg	10	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	90731485	90731485	C	A	SNP	PSMC1	ENST00000261303	human	ensembl	69_37n	1	known	silent	c.666	p.V222	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764	140	0	0	51	20	27.78	-	-	-	A	90731485	C	A	90731485	2	1	275	1	0	0	0	0	0	0	0	1	12765	813	29	2		2	PSMC1	14	90731485	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	80204	90731485	16618055	3881	29568										
CCDC88C	0	genome.wustl.edu	37	chr14	91766302	91766302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccccgcagcctctggttctCgcccatggcgagggcgtttg	14	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	91766302	91766302	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.3748	p.E1250K	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	31	0	0	11	6	35.29	-	-	-	T	91766302	C	T	91766302	3	4	275	1	0	0	0	0	1	0	0	0	2892	893	31	1	2378	1	CCDC88C	14	91766302	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1034817	91766302	15583238	3882	29569										
CATSPERB	0	genome.wustl.edu	37	chr14	92087993	92087993	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcttttaaaacataagagTttcccagatcaatgtatttc	5	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	92087993	92087993	T	G	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	missense	c.2219	p.N740T	0.001	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	337	0	0	299	62	17.17	-	-	-	G	92087993	T	G	92087993	3	3	275	1	0	0	0	0	1	0	0	0	2716	1725	60	5	1167	5	CATSPERB	14	92087993	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	321691	92087993	15261547	3883	29570										
CATSPERB	0	genome.wustl.edu	37	chr14	92159551	92159551	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggataactaaaaaatgattCgttaaaaccatatccaccaa	4	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	92159551	92159551	C	T	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	silent	c.750	p.T250	0.992	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	172	0	0	162	47	22.49	-	-	-	T	92159551	C	T	92159551	2	4	275	1	0	0	0	0	0	0	0	1	2716	871	31	1		1	CATSPERB	14	92159551	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71558	92159551	15189989	3884	29571										
TRIP11	0	genome.wustl.edu	37	chr14	92442497	92442497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctaagctcatcaatttcTtttgtacatcatccagcatt	4	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	92442497	92442497	T	C	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.5297	p.K1766R	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	271	0	0	174	39	18.31	-	-	-	C	92442497	T	C	92442497	3	2	275	1	0	0	0	0	1	0	0	0	16651	1609	56	5	662	5	TRIP11	14	92442497	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	282946	92442497	14907043	3885	29572										
SLC24A4	0	genome.wustl.edu	37	chr14	92915514	92915514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggaggctggtaatgatttCtatgacggtagctatgatga	13	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	92915514	92915514	C	A	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.834	p.F278L	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	57	0	0	27	8	22.22	-	-	-	A	92915514	C	A	92915514	3	1	275	1	0	0	0	0	1	0	0	0	14557	912	32	2	821	2	SLC24A4	14	92915514	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	473017	92915514	14434026	3886	29573										
RIN3	0	genome.wustl.edu	37	chr14	93119036	93119036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtcatggccaccgaccagGactcctactccaccagcagc	8	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	93119036	93119036	G	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	missense	c.1642	p.D548N	1.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	27	0	0	15	4	21.05	-	-	-	A	93119036	G	A	93119036	3	1	275	1	0	0	0	0	1	0	0	0	13459	1174	41	2	1664	2	RIN3	14	93119036	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	203522	93119036	14230504	3887	29574										
CHGA	0	genome.wustl.edu	37	chr14	93390551	93390551	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttcttcccagtcactgcGctccctgtgaacagccctat	6	16	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	93390551	93390551	G	A	SNP	CHGA	ENST00000216492	human	ensembl	69_37n	1	known	silent	c.54	p.A18	1.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGA	HGNC	ENSG00000100604	73	0	0	35	12	25.53	-	-	-	A	93390551	G	A	93390551	2	1	275	1	0	0	0	0	0	0	0	1	3367	1074	38	1		1	CHGA	14	93390551	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	271515	93390551	13958989	3888	29575										
PPP4R4	0	genome.wustl.edu	37	chr14	94711930	94711930	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctctgttaaaaggtactaGatgctcttatagatcatctt	6	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	94711930	94711930	G	T	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	missense	c.1351	p.D451Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	142	0	0	154	20	11.49	-	-	-	T	94711930	G	T	94711930	3	4	275	1	0	0	0	0	1	0	0	0	12482	942	33	2	1474	2	PPP4R4	14	94711930	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1321379	94711930	12637610	3889	29576										
PPP4R4	0	genome.wustl.edu	37	chr14	94718121	94718121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagttactggaatagacttCgatttttggatacctgtgaa	9	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	94718121	94718121	C	T	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	nonsense	c.1753	p.R585*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	199	1	0.5	118	29	19.73	-	-	-	T	94718121	C	T	94718121	4	4	275	1	0	0	0	0	0	1	0	0	12482	876	31	1	1888	1	PPP4R4	14	94718121	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6191	94718121	12631419	3890	29577										
PPP4R4	0	genome.wustl.edu	37	chr14	94733344	94733344	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtctcagggttaggaaaGacttctgtgctttcactagc	10	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	94733344	94733344	G	T	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	missense	c.2427	p.K809N	0.992	NULL	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	235	0	0	194	24	11.01	-	-	-	T	94733344	G	T	94733344	3	4	275	1	0	0	0	0	1	0	0	0	12482	933	33	2	2590	2	PPP4R4	14	94733344	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15223	94733344	12616196	3891	29578										
SERPINA1	0	genome.wustl.edu	37	chr14	94848936	94848936	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagcaaccttacctttaaaGaagatgtaattcaccagagc	7	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	94848936	94848936	G	A	SNP	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	silent	c.639	p.F213	0.703	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249	99	0	0	70	27	27.84	-	-	-	A	94848936	G	A	94848936	2	1	275	1	0	0	0	0	0	0	0	1	14174	933	33	2		2	SERPINA1	14	94848936	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	115592	94848936	12500604	3892	29579										
SERPINA12	0	genome.wustl.edu	37	chr14	94956041	94956041	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggagacacctatgtaggaGagagtcttcttcaggtcgaa	12	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	94956041	94956041	G	A	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	silent	c.969	p.L323	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	264	0	0	258	39	13.04	-	-	-	A	94956041	G	A	94956041	2	1	275	1	0	0	0	0	0	0	0	1	14177	929	33	2		2	SERPINA12	14	94956041	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	107105	94956041	12393499	3893	29580										
SERPINA4	0	genome.wustl.edu	37	chr14	95033426	95033426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagcatcactggtatcttCatgacagatacttgccctgc	9	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	95033426	95033426	C	A	SNP	SERPINA4	ENST00000298841	human	ensembl	69_37n	1	known	missense	c.769	p.H257N	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	146	0	0	101	17	14.41	-	-	-	A	95033426	C	A	95033426	3	1	275	1	0	0	0	0	1	0	0	0	14179	826	29	2	775	2	SERPINA4	14	95033426	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	77385	95033426	12316114	3894	29581										
SERPINA4	0	genome.wustl.edu	37	chr14	95033487	95033487	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaggagacgcaaccgtgtTtttcattctccctaaccaag	7	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	95033487	95033487	T	G	SNP	SERPINA4	ENST00000298841	human	ensembl	69_37n	1	known	missense	c.830	p.F277C	0.674	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	188	0	0	123	23	15.75	-	-	-	G	95033487	T	G	95033487	3	3	275	1	0	0	0	0	1	0	0	0	14179	1841	64	5	836	5	SERPINA4	14	95033487	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	61	95033487	12316053	3895	29582										
DICER1	0	genome.wustl.edu	37	chr14	95583978	95583978	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttcctgttttctgaatTctgcttccatctgtttgttg	6	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	95583978	95583978	T	G	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.1490	p.E497A	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	322	0	0	251	43	14.63	-	-	-	G	95583978	T	G	95583978	3	3	275	1	0	0	0	0	1	0	0	0	4557	1783	62	5	4354	5	DICER1	14	95583978	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	550491	95583978	11765562	3896	29583										
CLMN	0	genome.wustl.edu	37	chr14	95670497	95670497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagatggctcactgatgtCgctggtcttacctgggcccc	13	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	95670497	95670497	C	T	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	missense	c.1189	p.D397N	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	183	0	0	182	33	15.28	-	-	-	T	95670497	C	T	95670497	3	4	275	1	0	0	0	0	1	0	0	0	3572	884	31	1	1839	1	CLMN	14	95670497	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86519	95670497	11679043	3897	29584										
BDKRB2	0	genome.wustl.edu	37	chr14	96707396	96707396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtgtcatcaccttctgcaCgatgcagatcatgcaggtgc	11	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	96707396	96707396	C	T	SNP	BDKRB2	ENST00000306005	human	ensembl	69_37n	1	known	missense	c.731	p.T244M	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_B2_bradkn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398	66	0	0	42	10	19.23	-	-	-	T	96707396	C	T	96707396	3	4	275	1	0	0	0	0	1	0	0	0	1397	536	19	1	737	1	BDKRB2	14	96707396	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1036899	96707396	10642144	3898	29585										
AK7	0	genome.wustl.edu	37	chr14	96909082	96909082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagatggcttggttgggcGagattcctgcattaccagtt	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	96909082	96909082	G	A	SNP	AK7	ENST00000267584	human	ensembl	69_37n	1	known	missense	c.706	p.E236K	0.973	NULL	pfam_Dpy-30_motif,pfam_Adenylate_kin	-	no_errors	AK7	HGNC	ENSG00000140057	540	0	0	534	67	11.13	-	-	-	A	96909082	G	A	96909082	3	1	275	1	0	0	0	0	1	0	0	0	444	1059	37	1	732	1	AK7	14	96909082	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	201686	96909082	10440458	3899	29586										
PAPOLA	0	genome.wustl.edu	37	chr14	96993812	96993812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaccaagacatgttgatcGaagtgactttttcacctcat	7	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	96993812	96993812	G	A	SNP	PAPOLA	ENST00000216277	human	ensembl	69_37n	1	known	missense	c.377	p.R126Q	1.000	pfam_PolA_pol_cen_dom,pfam_Nucleotidyltransferase,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060	352	1	0.28	194	79	28.62	-	-	-	A	96993812	G	A	96993812	3	1	275	1	0	0	0	0	1	0	0	0	11502	1058	37	1	395	1	PAPOLA	14	96993812	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84730	96993812	10355728	3900	29587										
C14orf177	0	genome.wustl.edu	37	chr14	99182659	99182659	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagggaaatgcccaagttCtcagcacctgcagagcctaa	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	99182659	99182659	C	A	SNP	C14orf177	ENST00000325812	human	ensembl	69_37n	1	known	missense	c.131	p.S44Y	0.000	NULL	NULL	-	no_errors	C14orf177	HGNC	ENSG00000176605	242	0	0	227	28	10.98	-	-	-	A	99182659	C	A	99182659	3	1	275	1	0	0	0	0	1	0	0	0	1772	913	32	2	133	2	C14orf177	14	99182659	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2188847	99182659	8166881	3901	29588										
SETD3	0	genome.wustl.edu	37	chr14	99925516	99925516	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaacccataaaaacaattCttctgcctagggaaaaaaat	6	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	99925516	99925516	C	A	SNP	SETD3	ENST00000331768	human	ensembl	69_37n	-1	known	nonsense	c.352	p.E118*	1.000	pfam_SET_dom	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576	268	0	0	220	41	15.71	-	-	-	A	99925516	C	A	99925516	4	1	275	1	0	0	0	0	0	1	0	0	14220	922	32	2	1514	2	SETD3	14	99925516	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	742857	99925516	7424024	3902	29589										
SETD3	0	genome.wustl.edu	37	chr14	99932119	99932119	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagtgccagatttctgagtTtttactcgactcttcttacc	6	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	99932119	99932119	T	G	SNP	SETD3	ENST00000331768	human	ensembl	69_37n	-1	known	missense	c.24	p.K8N	1.000	NULL	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576	467	0	0	417	65	13.46	-	-	-	G	99932119	T	G	99932119	3	3	275	1	0	0	0	0	1	0	0	0	14220	1838	64	5	1854	5	SETD3	14	99932119	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6603	99932119	7417421	3903	29590										
CCNK	0	genome.wustl.edu	37	chr14	99969296	99969296	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctctccgcagcccagttCtccccgacaggttaagcgag	9	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	99969296	99969296	C	A	SNP	CCNK	ENST00000389879	human	ensembl	69_37n	1	known	missense	c.986	p.S329Y	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNK	HGNC	ENSG00000090061	213	0	0	156	40	20.41	-	-	-	A	99969296	C	A	99969296	3	1	275	1	0	0	0	0	1	0	0	0	2959	913	32	2	1012	2	CCNK	14	99969296	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	37177	99969296	7380244	3904	29591										
CYP46A1	0	genome.wustl.edu	37	chr14	100166377	100166377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggccaaggcttggtgtccGaatgcaactatgagcgctgg	14	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	100166377	100166377	G	A	SNP	CYP46A1	ENST00000261835	human	ensembl	69_37n	1	known	missense	c.382	p.E128K	0.158	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530	80	0	0	64	9	12.33	-	-	-	A	100166377	G	A	100166377	3	1	275	1	0	0	0	0	1	0	0	0	4213	1059	37	1	400	1	CYP46A1	14	100166377	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	197081	100166377	7183163	3905	29592										
RTL1	0	genome.wustl.edu	37	chr14	101348697	101348697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacgaattcgatgaagtttCgcagagatagcttggagcca	12	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	101348697	101348697	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2429	p.R810Q	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	69	0	0	52	15	20.83	-	-	-	T	101348697	C	T	101348697	3	4	275	1	0	0	0	0	1	0	0	0	13810	884	31	1	1651	1	RTL1	14	101348697	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1182320	101348697	6000843	3906	29593										
RTL1	0	genome.wustl.edu	37	chr14	101349481	101349481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtccgggtagcaggctcaTgccgtgcctctctagggcaa	13	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	101349481	101349481	T	C	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.1645	p.M549V	0.027	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	64	0	0	37	6	13.64	-	-	-	C	101349481	T	C	101349481	3	2	275	1	0	0	0	0	1	0	0	0	13810	1464	51	5	2435	5	RTL1	14	101349481	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	784	101349481	6000059	3907	29594										
RTL1	0	genome.wustl.edu	37	chr14	101349583	101349583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctttgatccagtcgacttCgggggcgtggactcggagcc	15	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	101349583	101349583	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.1543	p.E515K	0.102	superfamily_Peptidase_aspartic	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	45	0	0	21	6	22.22	-	-	-	T	101349583	C	T	101349583	3	4	275	1	0	0	0	0	1	0	0	0	13810	893	31	1	2537	1	RTL1	14	101349583	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102	101349583	5999957	3908	29595										
PPP2R5C	0	genome.wustl.edu	37	chr14	102348517	102348517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttgcagttaacatgtttcGaacattaccaccttcctcca	5	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	102348517	102348517	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	69_37n	1	known	missense	c.407	p.R136Q	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	154	0	0	73	26	26.26	-	-	-	A	102348517	G	A	102348517	3	1	275	1	0	0	0	0	1	0	0	0	12471	1058	37	1	693	1	PPP2R5C	14	102348517	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	998934	102348517	5001023	3909	29596										
HSP90AA1	0	genome.wustl.edu	37	chr14	102568379	102568379	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaccatcagatgccagaGaaacacttgggccttttctt	8	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	102568379	102568379	G	T	SNP	HSP90AA1	ENST00000334701	human	ensembl	69_37n	-1	known	missense	c.199	p.L67I	0.002	NULL	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824	115	0	0	121	18	12.95	-	-	-	T	102568379	G	T	102568379	3	4	275	1	0	0	0	0	1	0	0	0	7454	942	33	2	2409	2	HSP90AA1	14	102568379	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	219862	102568379	4781161	3910	29597										
WDR20	0	genome.wustl.edu	37	chr14	102675017	102675017	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttcctagtagcccactcGagtgggaacatgtacttata	8	10	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	102675017	102675017	G	A	SNP	WDR20	ENST00000454394	human	ensembl	69_37n	1	known	silent	c.603	p.S201	0.992	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	65	0	0	63	7	10	-	-	-	A	102675017	G	A	102675017	2	1	275	1	0	0	0	0	0	0	0	1	17377	1045	37	1		1	WDR20	14	102675017	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106638	102675017	4674523	3911	29598										
WDR20	0	genome.wustl.edu	37	chr14	102675930	102675930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accggaaggagaggcaccacGagaaagatcacaagcgaaat	12	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	102675930	102675930	G	A	SNP	WDR20	ENST00000454394	human	ensembl	69_37n	1	known	missense	c.1516	p.E506K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	88	0	0	48	25	34.25	-	-	-	A	102675930	G	A	102675930	3	1	275	1	0	0	0	0	1	0	0	0	17377	1059	37	1	1450	1	WDR20	14	102675930	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	913	102675930	4673610	3912	29599										
RCOR1	0	genome.wustl.edu	37	chr14	103173723	103173723	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctggcataaacataatatCgaaaagtcattggctgattt	7	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	103173723	103173723	C	T	SNP	RCOR1	ENST00000262241	human	ensembl	69_37n	1	known	silent	c.534	p.I178	1.000	superfamily_Homeodomain-like,pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,prints_Antifreeze_1,pfscan_ELM2_dom	-	no_errors	RCOR1	HGNC	ENSG00000089902	249	0	0	137	50	26.74	-	-	-	T	103173723	C	T	103173723	2	4	275	1	0	0	0	0	0	0	0	1	13265	874	31	1		1	RCOR1	14	103173723	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	497793	103173723	4175817	3913	29600										
TDRD9	0	genome.wustl.edu	37	chr14	104452641	104452641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagatgtttgatgacttgGatatgaaggagagtgggtaa	14	2	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	14	104452641	104452641	G	T	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	1	known	missense	c.1099	p.D367Y	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	409	0	0	354	121	25.47	-	-	-	T	104452641	G	T	104452641	3	4	275	1	0	0	0	0	1	0	0	0	15831	1174	41	2	1129	2	TDRD9	14	104452641	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1278918	104452641	2896899	3914	29601										
OR4N4	0	genome.wustl.edu	37	chr15	22382602	22382602	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatcctccctggaaattttCtcattattttcaccataagg	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	22382602	22382602	C	T	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	missense	c.130	p.L44F	0.795	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	276	0	0	224	27	10.76	-	-	-	T	22382602	C	T	22382602	3	4	275	1	0	0	0	0	1	0	0	0	11151	913	32	2	132	2	OR4N4	15	22382602	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		22382602	80148790	3915	29602										
TUBGCP5	0	genome.wustl.edu	37	chr15	22841055	22841055	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagaaaagaaagatgatttCgactggggaaaatacttgat	10	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	22841055	22841055	C	T	SNP	TUBGCP5	ENST00000558664	human	ensembl	69_37n	1	novel	nonsense	c.166	p.R56*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TUBGCP5	HGNC	ENSG00000153575	78	0	0	87	13	13	-	-	-	T	22841055	C	T	22841055	4	4	275	1	0	0	0	0	0	1	0	0	16866	883	31	1	441	1	TUBGCP5	15	22841055	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	458453	22841055	79690337	3916	29603										
UBE3A	0	genome.wustl.edu	37	chr15	25616214	25616214	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaccattttcaagcacttCgaagcagcaacaatggcatc	6	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	25616214	25616214	C	T	SNP	UBE3A	ENST00000397954	human	ensembl	69_37n	-1	known	silent	c.1116	p.S372	0.748	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	84	0	0	77	13	14.29	-	-	-	T	25616214	C	T	25616214	2	4	275	1	0	0	0	0	0	0	0	1	16976	871	31	1		1	UBE3A	15	25616214	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2775159	25616214	76915178	3917	29604										
GABRA5	0	genome.wustl.edu	37	chr15	27114375	27114375	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccatattcacctgcttCaactactattcttattggga	4	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	27114375	27114375	C	A	SNP	GABRA5	ENST00000557449	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.934	-	-	-	no_errors	GABRA5	HGNC	ENSG00000186297	241	0	0	159	18	10.17	-	-	-	A	27114375	C	A	27114375	1	1	275	0	1	0	0	0	0	0	0	0	6213	841	29	2		2	GABRA5	15	27114375	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1498161	27114375	75417017	3918	29605										
HERC2	0	genome.wustl.edu	37	chr15	28408347	28408347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcaggtctaccaccacacGagtgtcatccgcaatcagca	9	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	28408347	28408347	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.10639	p.R3547C	0.991	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	263	0	0	135	71	34.47	-	-	-	A	28408347	G	A	28408347	3	1	275	1	0	0	0	0	1	0	0	0	7109	1058	37	1	3965	1	HERC2	15	28408347	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1293972	28408347	74123045	3919	29606										
HERC2	0	genome.wustl.edu	37	chr15	28414741	28414741	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaagggcgatttggcttaGaattacttgcaccacttatt	10	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	28414741	28414741	G	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.10118	p.S3373Y	0.006	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	247	0	0	125	23	15.54	-	-	-	T	28414741	G	T	28414741	3	4	275	1	0	0	0	0	1	0	0	0	7109	942	33	2	4498	2	HERC2	15	28414741	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6394	28414741	74116651	3920	29607										
TRPM1	0	genome.wustl.edu	37	chr15	31294696	31294696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcacatctgttttatttaAacttggggaaatagtttctt	6	5	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	31294696	31294696	A	C	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.4258	p.L1420V	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	578	0	0	288	120	29.41	-	-	-	C	31294696	A	C	31294696	3	2	275	1	0	0	0	0	1	0	0	0	16681	11	1	5	674	5	TRPM1	15	31294696	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2879955	31294696	71236696	3921	29608										
TRPM1	0	genome.wustl.edu	37	chr15	31295190	31295190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcttctagctgagcaagtCgaaggtcaacagtctgcagg	11	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	31295190	31295190	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.3764	p.R1255Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	152	0	0	65	15	18.75	-	-	-	T	31295190	C	T	31295190	3	4	275	1	0	0	0	0	1	0	0	0	16681	884	31	1	1168	1	TRPM1	15	31295190	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	494	31295190	71236202	3922	29609										
TRPM1	0	genome.wustl.edu	37	chr15	31321583	31321583	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaaacttacgattaatttCcatggcgtagactacatgac	7	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	31321583	31321583	C	A	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	nonsense	c.3190	p.E1064*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	256	0	0	145	67	31.6	-	-	-	A	31321583	C	A	31321583	4	1	275	1	0	0	0	0	0	1	0	0	16681	864	30	2	1758	2	TRPM1	15	31321583	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26393	31321583	71209809	3923	29610										
OTUD7A	0	genome.wustl.edu	37	chr15	31776839	31776839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttagaattgctgcacaccGaatcgcggtccgagtccagc	11	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	31776839	31776839	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.1460	p.S487L	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	18	0	0	5	4	44.44	-	-	-	A	31776839	G	A	31776839	3	1	275	1	0	0	0	0	1	0	0	0	11391	1059	37	1	1345	1	OTUD7A	15	31776839	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	455256	31776839	70754553	3924	29611										
CHRNA7	0	genome.wustl.edu	37	chr15	32450797	32450797	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgcagattccggggagaaGatttccctgggtaagcgccc	13	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	32450797	32450797	G	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	1	known	missense	c.870	p.K290N	0.975	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	122	0	0	82	37	31.09	-	-	-	T	32450797	G	T	32450797	3	4	275	1	0	0	0	0	1	0	0	0	3417	933	33	2	809	2	CHRNA7	15	32450797	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	673958	32450797	70080595	3925	29612										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32920994	32920994	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctattacacctcaagaaGaaagaattggtaggtattta	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	32920994	32920994	G	T	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	nonsense	c.928	p.E310*	0.995	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	129	0	0	59	24	28.92	-	-	-	T	32920994	G	T	32920994	4	4	275	1	0	0	0	0	0	1	0	0	865	943	33	2	954	2	ARHGAP11A	15	32920994	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	470197	32920994	69610398	3926	29613										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32928050	32928050	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaacaaagtttaaaaaatCgaattgaatctgtaaaaaca	4	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	32928050	32928050	C	T	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	nonsense	c.1417	p.R473*	0.009	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	171	0	0	98	20	16.95	-	-	-	T	32928050	C	T	32928050	4	4	275	1	0	0	0	0	0	1	0	0	865	876	31	1	1459	1	ARHGAP11A	15	32928050	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7056	32928050	69603342	3927	29614										
C15orf29	0	genome.wustl.edu	37	chr15	34445073	34445073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagttaaccaaatatgttCgactatcatggtgtaatttt	8	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	34445073	34445073	C	T	SNP	C15orf29	ENST00000256544	human	ensembl	69_37n	-1	known	missense	c.356	p.R119Q	0.999	NULL	NULL	-	no_errors	C15orf29	HGNC	ENSG00000134152	65	0	0	56	20	26.32	-	-	-	T	34445073	C	T	34445073	3	4	275	1	0	0	0	0	1	0	0	0	1801	884	31	1	586	1	C15orf29	15	34445073	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1517023	34445073	68086319	3928	29615										
SLC12A6	0	genome.wustl.edu	37	chr15	34534357	34534357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctattaccatggctacaatgGcataataccaggaagaaatg	8	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	34534357	34534357	G	A	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.2081	p.A694V	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	169	0	0	92	46	33.33	-	-	-	A	34534357	G	A	34534357	3	1	275	1	0	0	0	0	1	0	0	0	14476	1203	42	4	1384	4	SLC12A6	15	34534357	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	89284	34534357	67997035	3929	29616										
MEIS2	0	genome.wustl.edu	37	chr15	37388588	37388588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggagtgcaggtcgccagctCgcacttctcaaagaccagag	13	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	37388588	37388588	C	T	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.289	p.E97K	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	110	0	0	61	28	31.46	-	-	-	T	37388588	C	T	37388588	3	4	275	1	0	0	0	0	1	0	0	0	9539	893	31	1	1247	1	MEIS2	15	37388588	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2854231	37388588	65142804	3930	29617										
MEIS2	0	genome.wustl.edu	37	chr15	37390322	37390322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaccggggggatcggccGcggcgcgtgagggtctccgt	20	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	37390322	37390322	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.91	p.R31W	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	50	0	0	22	5	18.52	-	-	-	A	37390322	G	A	37390322	3	1	275	1	0	0	0	0	1	0	0	0	9539	1086	38	1	1449	1	MEIS2	15	37390322	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1734	37390322	65141070	3931	29618										
SPRED1	0	genome.wustl.edu	37	chr15	38614451	38614451	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttttgtcaggtggttttgGaatgtatgcttaaaaaagac	11	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	38614451	38614451	G	T	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	nonsense	c.217	p.E73*	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	160	1	0.62	113	23	16.91	-	-	-	T	38614451	G	T	38614451	4	4	275	1	0	0	0	0	0	1	0	0	15183	1175	41	2	227	2	SPRED1	15	38614451	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1224129	38614451	63916941	3932	29619										
FAM98B	0	genome.wustl.edu	37	chr15	38773671	38773671	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattaataaggttggtgtttCtttcagtacagtggaaaatg	10	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	38773671	38773671	C	A	SNP	FAM98B	ENST00000491535	human	ensembl	69_37n	1	known	missense	c.908	p.S303Y	0.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98B	HGNC	ENSG00000171262	193	0	0	125	46	26.9	-	-	-	A	38773671	C	A	38773671	3	1	275	1	0	0	0	0	1	0	0	0	5703	913	32	2	934	2	FAM98B	15	38773671	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	159220	38773671	63757721	3933	29620										
THBS1	0	genome.wustl.edu	37	chr15	39885726	39885726	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatgttgtgatgtggaagCaagtcacccagtcctactgg	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	39885726	39885726	C	T	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	nonsense	c.3124	p.Q1042*	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	92	0	0	64	16	19.75	-	-	-	T	39885726	C	T	39885726	4	4	275	1	0	0	0	0	0	1	0	0	15948	711	25	4	3194	4	THBS1	15	39885726	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1112055	39885726	62645666	3934	29621										
FSIP1	0	genome.wustl.edu	37	chr15	40057930	40057930	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaagttgagaatctaattCttttaatttgggttcatcta	7	4	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40057930	40057930	C	A	SNP	FSIP1	ENST00000350221	human	ensembl	69_37n	-1	known	nonsense	c.328	p.E110*	0.950	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	360	0	0	213	50	19.01	-	-	-	A	40057930	C	A	40057930	4	1	275	1	0	0	0	0	0	1	0	0	6123	922	32	2	1453	2	FSIP1	15	40057930	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	172204	40057930	62473462	3935	29622										
FSIP1	0	genome.wustl.edu	37	chr15	40068637	40068637	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttgagagcacctccaaaGaagcatttgaacttctgctc	8	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40068637	40068637	G	T	SNP	FSIP1	ENST00000350221	human	ensembl	69_37n	-1	known	missense	c.89	p.S30Y	1.000	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	441	0	0	347	39	10.1	-	-	-	T	40068637	G	T	40068637	3	4	275	1	0	0	0	0	1	0	0	0	6123	942	33	2	1700	2	FSIP1	15	40068637	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10707	40068637	62462755	3936	29623										
PLCB2	0	genome.wustl.edu	37	chr15	40585831	40585831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgggtgacagcttagttCgatagcgcctcttggggtcc	13	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40585831	40585831	C	T	SNP	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	missense	c.2156	p.R719Q	1.000	pirsf_PLC-beta,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	89	0	0	43	9	17.31	-	-	-	T	40585831	C	T	40585831	3	4	275	1	0	0	0	0	1	0	0	0	12102	884	31	1	1453	1	PLCB2	15	40585831	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	517194	40585831	61945561	3937	29624										
DISP2	0	genome.wustl.edu	37	chr15	40657453	40657453	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggaggacagaaggcaagaGaacttcttctgtggcccccc	12	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40657453	40657453	G	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	missense	c.825	p.E275D	0.203	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	25	0	0	14	4	22.22	-	-	-	T	40657453	G	T	40657453	3	4	275	1	0	0	0	0	1	0	0	0	4576	933	33	2	847	2	DISP2	15	40657453	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71622	40657453	61873939	3938	29625										
C15orf23	0	genome.wustl.edu	37	chr15	40675196	40675196	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgacagttgctgcagggaatCttttaaacgagagcgagaag	13	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40675196	40675196	C	A	SNP	C15orf23	ENST00000249776	human	ensembl	69_37n	1	known	missense	c.160	p.L54I	0.000	NULL	NULL	-	no_errors	C15orf23	HGNC	ENSG00000128944	26	0	0	21	8	27.59	-	-	-	A	40675196	C	A	40675196	3	1	275	1	0	0	0	0	1	0	0	0	1797	913	32	2	162	2	C15orf23	15	40675196	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17743	40675196	61856196	3939	29626										
IVD	0	genome.wustl.edu	37	chr15	40710374	40710374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcccatgggccgctttcttcGagatgccaagctgtatgaga	11	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40710374	40710374	G	A	SNP	IVD	ENST00000487418	human	ensembl	69_37n	1	known	missense	c.1193	p.R398Q	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928	131	0	0	97	11	10.19	-	-	-	A	40710374	G	A	40710374	3	1	275	1	0	0	0	0	1	0	0	0	7982	1058	37	1	1239	1	IVD	15	40710374	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	35178	40710374	61821018	3940	29627										
CASC5	0	genome.wustl.edu	37	chr15	40949292	40949292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cataagcttattttccagtaCgttgaagaaaaggaatcctg	8	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	40949292	40949292	C	T	SNP	CASC5	ENST00000526913	human	ensembl	69_37n	1	known	missense	c.3670	p.R1224C	0.668	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CASC5	HGNC	ENSG00000137812	84	0	0	56	14	20	-	-	-	T	40949292	C	T	40949292	3	4	275	1	0	0	0	0	1	0	0	0	2688	547	19	1	6705	1	CASC5	15	40949292	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	238918	40949292	61582100	3941	29628										
SPINT1	0	genome.wustl.edu	37	chr15	41145375	41145375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttgaaggtacaaccccagGaacccctggtgctgaaggat	11	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	41145375	41145375	G	A	SNP	SPINT1	ENST00000344051	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	1.000	NULL	pfam_Prot_inh_Kunz-m,pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_Prot_inh_Kunz-m,superfamily_LDrepeatLR_classA_rpt,superfamily_PKD_dom,smart_MANSC_N,smart_Prot_inh_Kunz-m,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	SPINT1	HGNC	ENSG00000166145	303	0	0	221	38	14.62	-	-	-	A	41145375	G	A	41145375	3	1	275	1	0	0	0	0	1	0	0	0	15159	1175	41	2	535	2	SPINT1	15	41145375	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196083	41145375	61386017	3942	29629										
EXD1	0	genome.wustl.edu	37	chr15	41522724	41522724	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgttagggctttttcctccGaaggaagtttgggaaatctg	12	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	41522724	41522724	G	A	SNP	EXD1	ENST00000559743	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXD1	HGNC	ENSG00000178997	116	0	0	44	18	28.57	-	-	-	A	41522724	G	A	41522724	1	1	275	0	1	0	0	0	0	0	0	0	5333	1073	37	1		1	EXD1	15	41522724	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	377349	41522724	61008668	3943	29630										
RTF1	0	genome.wustl.edu	37	chr15	41709442	41709442	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggggaccaccatggtaaaGaagcggaaaggccgcgtcgt	16	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	41709442	41709442	G	T	SNP	RTF1	ENST00000389629	human	ensembl	69_37n	1	known	missense	c.129	p.K43N	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	21	0	0	1	3	75	-	-	-	T	41709442	G	T	41709442	3	4	275	1	0	0	0	0	1	0	0	0	13807	933	33	2	131	2	RTF1	15	41709442	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186718	41709442	60821950	3944	29631										
LTK	0	genome.wustl.edu	37	chr15	41799756	41799756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgcctgctagacgcttcGtacccagaatcaggacccca	9	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	41799756	41799756	G	A	SNP	LTK	ENST00000561619	human	ensembl	69_37n	-1	novel	missense	c.395	p.T132M	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	66	0	0	33	6	15.38	-	-	-	A	41799756	G	A	41799756	3	1	275	1	0	0	0	0	1	0	0	0	9146	1160	40	1		1	LTK	15	41799756	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90314	41799756	60731636	3945	29632										
MGA	0	genome.wustl.edu	37	chr15	41961475	41961475	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tattcttgtcatggatatatCtcctgtggataaccatcgtt	7	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	41961475	41961475	C	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.383	p.S128Y	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	257	0	0	128	30	18.99	-	-	-	A	41961475	C	A	41961475	3	1	275	1	0	0	0	0	1	0	0	0	9611	913	32	2	385	2	MGA	15	41961475	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	161719	41961475	60569917	3946	29633										
MGA	0	genome.wustl.edu	37	chr15	42021428	42021428	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatgacttgtgctcgagttCgagtatatgagcgaaaaaaa	11	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42021428	42021428	C	T	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	nonsense	c.3724	p.R1242*	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	241	0	0	165	39	19.12	-	-	-	T	42021428	C	T	42021428	4	4	275	1	0	0	0	0	0	1	0	0	9611	876	31	1	3762	1	MGA	15	42021428	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	59953	42021428	60509964	3947	29634										
MGA	0	genome.wustl.edu	37	chr15	42046670	42046670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacattgaggatgatgaggaGcacgtggacattgagactgt	14	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42046670	42046670	G	A	SNP	MGA	ENST00000564190	human	ensembl	69_37n	1	novel	missense	c.2986	p.A996T	0.789	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGA	HGNC	ENSG00000174197	292	0	0	276	43	13.44	-	-	-	A	42046670	G	A	42046670	3	1	275	1	0	0	0	0	1	0	0	0	9611	962	34	4	7110	4	MGA	15	42046670	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25242	42046670	60484722	3948	29635										
SPTBN5	0	genome.wustl.edu	37	chr15	42182386	42182386	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccacgatgttctctggcccGatgagtggtactggcacctg	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42182386	42182386	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	silent	c.402	p.I134	0.889	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	185	0	0	100	40	28.37	-	-	-	A	42182386	G	A	42182386	2	1	275	1	0	0	0	0	0	0	0	1	15213	1048	37	1		1	SPTBN5	15	42182386	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135716	42182386	60349006	3949	29636										
PLA2G4D	0	genome.wustl.edu	37	chr15	42364096	42364096	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaccgacctcatagggggaGaactcaacccactctaatgg	9	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42364096	42364096	G	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.1449	p.F483L	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	60	0	0	27	10	27.03	-	-	-	T	42364096	G	T	42364096	3	4	275	1	0	0	0	0	1	0	0	0	12078	933	33	2	1031	2	PLA2G4D	15	42364096	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181710	42364096	60167296	3950	29637										
ZFP106	0	genome.wustl.edu	37	chr15	42729452	42729452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagattataaacccgaacaGttttatctgctgaacaggta	7	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42729452	42729452	G	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.4655	p.T1552N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	296	0	0	284	65	18.62	-	-	-	T	42729452	G	T	42729452	3	4	275	1	0	0	0	0	1	0	0	0	17733	1029	36	4	1036	4	ZFP106	15	42729452	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	365356	42729452	59801940	3951	29638										
ZFP106	0	genome.wustl.edu	37	chr15	42743220	42743220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaattacgtgtttcatcaGtttggggctcctgtattcct	11	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42743220	42743220	G	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.1181	p.T394N	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	1034	0	0	809	241	22.95	-	-	-	T	42743220	G	T	42743220	3	4	275	1	0	0	0	0	1	0	0	0	17733	1029	36	4	4542	4	ZFP106	15	42743220	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13768	42743220	59788172	3952	29639										
ZFP106	0	genome.wustl.edu	37	chr15	42743464	42743464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctgctcaaaattgaagtCgagtaagccttctgaaggaa	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	42743464	42743464	C	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.937	p.D313N	0.948	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	294	0	0	232	62	20.95	-	-	-	T	42743464	C	T	42743464	3	4	275	1	0	0	0	0	1	0	0	0	17733	884	31	1	4786	1	ZFP106	15	42743464	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	244	42743464	59787928	3953	29640										
UBR1	0	genome.wustl.edu	37	chr15	43348619	43348619	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgatcatcactgatatattCtttctgcagttgtttataat	5	6	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43348619	43348619	C	A	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	nonsense	c.1204	p.E402*	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	277	0	0	218	37	14.51	-	-	-	A	43348619	C	A	43348619	4	1	275	1	0	0	0	0	0	1	0	0	16998	922	32	2	4193	2	UBR1	15	43348619	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	605155	43348619	59182773	3954	29641										
TUBGCP4	0	genome.wustl.edu	37	chr15	43692373	43692373	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaatcaagtggcgcctaaGaaatcacatggcatttttgg	10	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43692373	43692373	G	T	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.1553	p.R518I	0.967	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	485	2	0.41	289	40	12.16	-	-	-	T	43692373	G	T	43692373	3	4	275	1	0	0	0	0	1	0	0	0	16865	942	33	2	1604	2	TUBGCP4	15	43692373	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	343754	43692373	58839019	3955	29642										
TP53BP1	0	genome.wustl.edu	37	chr15	43707863	43707863	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcagaagtgataagttttCttttgcctgagagaactccc	8	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43707863	43707863	C	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.5018	p.R1673I	1.000	smart_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	287	1	0.35	218	79	26.42	-	-	-	A	43707863	C	A	43707863	3	1	275	1	0	0	0	0	1	0	0	0	16479	913	32	2	939	2	TP53BP1	15	43707863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	15490	43707863	58823529	3956	29643										
MAP1A	0	genome.wustl.edu	37	chr15	43816968	43816968	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacaggataaagcaatagtCtttgagattatggaggcagg	13	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43816968	43816968	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.3297	p.V1099	0.991	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	77	0	0	42	20	32.26	-	-	-	A	43816968	C	A	43816968	2	1	275	1	0	0	0	0	0	0	0	1	9298	900	32	2		2	MAP1A	15	43816968	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	109105	43816968	58714424	3957	29644										
MAP1A	0	genome.wustl.edu	37	chr15	43818282	43818282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacagaaacaccaggcccaGgaacaaaaggataaagtctc	9	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43818282	43818282	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.4611	p.Q1537H	0.015	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	250	0	0	180	35	16.28	-	-	-	T	43818282	G	T	43818282	3	4	275	1	0	0	0	0	1	0	0	0	9298	991	35	4	4613	4	MAP1A	15	43818282	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1314	43818282	58713110	3958	29645										
MAP1A	0	genome.wustl.edu	37	chr15	43818325	43818325	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagaaggatcaggccttaGaacaaaaatactgggctttg	10	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43818325	43818325	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	nonsense	c.4654	p.E1552*	0.001	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	199	1	0.5	122	36	22.78	-	-	-	T	43818325	G	T	43818325	4	4	275	1	0	0	0	0	0	1	0	0	9298	943	33	2	4656	2	MAP1A	15	43818325	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43	43818325	58713067	3959	29646										
MAP1A	0	genome.wustl.edu	37	chr15	43818444	43818444	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcaggaggataaaaccagGaaaccaaagatgctagagga	13	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43818444	43818444	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.4773	p.R1591S	0.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	100	0	0	93	20	17.7	-	-	-	T	43818444	G	T	43818444	3	4	275	1	0	0	0	0	1	0	0	0	9298	1165	41	2	4775	2	MAP1A	15	43818444	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	119	43818444	58712948	3960	29647										
MAP1A	0	genome.wustl.edu	37	chr15	43820491	43820491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatttcaagtgtggcggagCgcttctctccaagccttgag	12	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43820491	43820491	C	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.6820	p.R2274C	0.927	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	54	0	0	29	7	19.44	-	-	-	T	43820491	C	T	43820491	3	4	275	1	0	0	0	0	1	0	0	0	9298	768	27	1	6822	1	MAP1A	15	43820491	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2047	43820491	58710901	3961	29648										
CKMT1B	0	genome.wustl.edu	37	chr15	43891360	43891360	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attagtgtcccttaggtggaGctggtgcaactggtcatcga	13	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	43891360	43891360	G	A	SNP	CKMT1B	ENST00000300283	human	ensembl	69_37n	1	known	silent	c.1143	p.E381	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1B	HGNC	ENSG00000237289	332	0	0	280	120	30	-	-	-	A	43891360	G	A	43891360	2	1	275	1	0	0	0	0	0	0	0	1	3480	962	34	4		4	CKMT1B	15	43891360	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70869	43891360	58640032	3962	29649										
SERINC4	0	genome.wustl.edu	37	chr15	44087639	44087639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgaggcaaggaagaagacGaagtggaaggcagaatagtt	16	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	44087639	44087639	G	A	SNP	SERINC4	ENST00000299969	human	ensembl	69_37n	-1	novel	missense	c.1067	p.S356L	0.150	NULL	pfam_TMS_TDE	-	no_errors	SERINC4	HGNC	ENSG00000184716	154	0	0	119	20	14.39	-	-	-	A	44087639	G	A	44087639	3	1	275	1	0	0	0	0	1	0	0	0	14170	1049	37	1	274	1	SERINC4	15	44087639	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196279	44087639	58443753	3963	29650										
WDR76	0	genome.wustl.edu	37	chr15	44149275	44149275	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacctggaacttcttatgaGaaacttaccagttcttctat	5	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	44149275	44149275	G	T	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	missense	c.1323	p.E441D	0.918	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	190	0	0	181	29	13.81	-	-	-	T	44149275	G	T	44149275	3	4	275	1	0	0	0	0	1	0	0	0	17423	933	33	2	1361	2	WDR76	15	44149275	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	61636	44149275	58382117	3964	29651										
CTDSPL2	0	genome.wustl.edu	37	chr15	44751376	44751376	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgtcttcaattaaaaaatTtattaaaggaagcacaccta	5	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	44751376	44751376	T	G	SNP	CTDSPL2	ENST00000260327	human	ensembl	69_37n	1	known	missense	c.164	p.F55C	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL2	HGNC	ENSG00000137770	152	0	0	106	14	11.67	-	-	-	G	44751376	T	G	44751376	3	3	275	1	0	0	0	0	1	0	0	0	4038	1841	64	5	166	5	CTDSPL2	15	44751376	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	602101	44751376	57780016	3965	29652										
CTDSPL2	0	genome.wustl.edu	37	chr15	44783176	44783176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcagaagaaacagttaatCgtgatatcccaccccttaca	6	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	44783176	44783176	C	T	SNP	CTDSPL2	ENST00000260327	human	ensembl	69_37n	1	known	missense	c.670	p.R224C	0.999	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL2	HGNC	ENSG00000137770	169	0	0	188	39	17.18	-	-	-	T	44783176	C	T	44783176	3	4	275	1	0	0	0	0	1	0	0	0	4038	884	31	1	684	1	CTDSPL2	15	44783176	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31800	44783176	57748216	3966	29653										
TRIM69	0	genome.wustl.edu	37	chr15	45059889	45059889	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagtaacactttcatggaGaaactttatccctacttctg	5	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	45059889	45059889	G	A	SNP	TRIM69	ENST00000329464	human	ensembl	69_37n	1	known	silent	c.1422	p.E474	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM69	HGNC	ENSG00000185880	218	0	0	146	18	10.98	-	-	-	A	45059889	G	A	45059889	2	1	275	1	0	0	0	0	0	0	0	1	16638	933	33	2		2	TRIM69	15	45059889	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	276713	45059889	57471503	3967	29654										
DUOX2	0	genome.wustl.edu	37	chr15	45396387	45396387	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactctcggaaggacaggtaGccattgccatccttgtcagc	10	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	45396387	45396387	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.2511	p.G837	0.998	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	94	0	0	52	27	34.18	-	-	-	A	45396387	G	A	45396387	2	1	275	1	0	0	0	0	0	0	0	1	4836	958	34	4		4	DUOX2	15	45396387	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336498	45396387	57135005	3968	29655										
DUOXA1	0	genome.wustl.edu	37	chr15	45409845	45409845	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcgtttgaggccagagttCgagaccagcctgggcaacat	14	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	45409845	45409845	C	T	SNP	DUOXA1	ENST00000267803	human	ensembl	69_37n	-1	known	silent	c.1320	p.S440	0.001	NULL	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA1	HGNC	ENSG00000140254	31	0	0	11	8	42.11	-	-	-	T	45409845	C	T	45409845	2	4	275	1	0	0	0	0	0	0	0	1	4837	871	31	1		1	DUOXA1	15	45409845	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13458	45409845	57121547	3969	29656										
SEMA6D	0	genome.wustl.edu	37	chr15	48052587	48052587	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagctgatgttgaaaattCgagacacactttatattgct	7	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	48052587	48052587	C	T	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	1	known	nonsense	c.196	p.R66*	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	393	0	0	235	76	24.36	-	-	-	T	48052587	C	T	48052587	4	4	275	1	0	0	0	0	0	1	0	0	14130	876	31	1	202	1	SEMA6D	15	48052587	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2642742	48052587	54478805	3970	29657										
SLC12A1	0	genome.wustl.edu	37	chr15	48513188	48513188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggattgttggagaagctgGaattggtaagcatttttccc	12	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	48513188	48513188	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	69_37n	1	known	missense	c.623	p.G208E	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803	169	0	0	115	15	11.54	-	-	-	A	48513188	G	A	48513188	3	1	275	1	0	0	0	0	1	0	0	0	14471	1174	41	2	633	2	SLC12A1	15	48513188	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	460601	48513188	54018204	3971	29658										
SLC12A1	0	genome.wustl.edu	37	chr15	48521450	48521450	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgggtcaataggcctgatCtttgcttttgctaatgcagt	12	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	48521450	48521450	C	A	SNP	SLC12A1	ENST00000380993	human	ensembl	69_37n	1	known	silent	c.789	p.I263	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803	443	0	0	245	136	35.7	-	-	-	A	48521450	C	A	48521450	2	1	275	1	0	0	0	0	0	0	0	1	14471	903	32	2		2	SLC12A1	15	48521450	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8262	48521450	54009942	3972	29659										
DUT	0	genome.wustl.edu	37	chr15	48633727	48633727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagtcaaaaaaggtgatcGaattgcacagctcatttgcg	10	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	48633727	48633727	G	A	SNP	DUT	ENST00000331200	human	ensembl	69_37n	1	known	missense	c.647	p.R216Q	1.000	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	-	no_errors	DUT	HGNC	ENSG00000128951	189	0	0	88	45	33.83	-	-	-	A	48633727	G	A	48633727	3	1	275	1	0	0	0	0	1	0	0	0	4868	1058	37	1	685	1	DUT	15	48633727	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	112277	48633727	53897665	3973	29660										
CEP152	0	genome.wustl.edu	37	chr15	49044665	49044665	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagagagctcggccatatttCtctgaaataaagtatcttca	7	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	49044665	49044665	C	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.3347	p.R1116I	0.004	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	176	0	0	60	28	31.82	-	-	-	A	49044665	C	A	49044665	3	1	275	1	0	0	0	0	1	0	0	0	3277	927	32	2	1641	2	CEP152	15	49044665	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	410938	49044665	53486727	3974	29661										
GALK2	0	genome.wustl.edu	37	chr15	49509489	49509489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgtacgctctccaactggCcaatacaaatcccttgtatc	5	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	49509489	49509489	C	T	SNP	GALK2	ENST00000560031	human	ensembl	69_37n	1	known	missense	c.245	p.A82V	1.000	superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	-	no_errors	GALK2	HGNC	ENSG00000156958	231	0	0	109	31	22.14	-	-	-	T	49509489	C	T	49509489	3	4	275	1	0	0	0	0	1	0	0	0	6254	739	26	4	279	4	GALK2	15	49509489	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	464824	49509489	53021903	3975	29662										
ATP8B4	0	genome.wustl.edu	37	chr15	50336860	50336860	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggcacaatggtggtaaaCcaggtcaaggaggaaatttc	12	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50336860	50336860	C	T	SNP	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	nonsense	c.231	p.W77*	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	232	0	0	166	52	23.85	-	-	-	T	50336860	C	T	50336860	4	4	275	1	0	0	0	0	0	1	0	0	1201	508	18	4	3443	4	ATP8B4	15	50336860	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	827371	50336860	52194532	3976	29663										
ATP8B4	0	genome.wustl.edu	37	chr15	50339641	50339641	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggtgagaatattatatttCgatgtgtggatacgattatc	10	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50339641	50339641	C	T	SNP	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	silent	c.108	p.S36	0.999	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	246	0	0	166	50	23.15	-	-	-	T	50339641	C	T	50339641	2	4	275	1	0	0	0	0	0	0	0	1	1201	871	31	1		1	ATP8B4	15	50339641	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2781	50339641	52191751	3977	29664										
GABPB1	0	genome.wustl.edu	37	chr15	50596224	50596224	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccatatgtaatggtgttCggtccactttggttctggca	11	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50596224	50596224	C	T	SNP	GABPB1	ENST00000220429	human	ensembl	69_37n	-1	known	missense	c.215	p.R72Q	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB1	HGNC	ENSG00000104064	297	0	0	292	115	28.26	-	-	-	T	50596224	C	T	50596224	3	4	275	1	0	0	0	0	1	0	0	0	6207	884	31	1	1048	1	GABPB1	15	50596224	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256583	50596224	51935168	3978	29665										
USP8	0	genome.wustl.edu	37	chr15	50773883	50773883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactgctcttctaatggaaaAaaacaaacaagaaaaagaac	5	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50773883	50773883	A	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.1424	p.K475T	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	671	1	0.15	539	96	15.12	-	-	-	C	50773883	A	C	50773883	3	2	275	1	0	0	0	0	1	0	0	0	17186	14	1	5	1462	5	USP8	15	50773883	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	177659	50773883	51757509	3979	29666										
USP8	0	genome.wustl.edu	37	chr15	50773900	50773900	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaaacaaacaagaaaaaGaacttcgggaaaggcagcaa	8	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50773900	50773900	G	T	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	nonsense	c.1441	p.E481*	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	770	0	0	532	212	28.49	-	-	-	T	50773900	G	T	50773900	4	4	275	1	0	0	0	0	0	1	0	0	17186	943	33	2	1479	2	USP8	15	50773900	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17	50773900	51757492	3980	29667										
TRPM7	0	genome.wustl.edu	37	chr15	50905911	50905911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaataaatttacctttggtCggtagggctgtgctgtctta	10	6	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	50905911	50905911	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	69_37n	-1	known	missense	c.1763	p.R588Q	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	156	1	0.64	166	26	13.54	-	-	-	T	50905911	C	T	50905911	3	4	275	1	0	0	0	0	1	0	0	0	16687	884	31	1	3934	1	TRPM7	15	50905911	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	132011	50905911	51625481	3981	29668										
AP4E1	0	genome.wustl.edu	37	chr15	51260498	51260498	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctggatggttttgtggcTgaaggactcagtcagggtgc	15	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51260498	51260498	T	G	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	silent	c.1890	p.A630	0.998	superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	395	0	0	354	56	13.66	-	-	-	G	51260498	T	G	51260498	2	3	275	1	0	0	0	0	0	0	0	1	753	1567	55	5		5	AP4E1	15	51260498	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	354587	51260498	51270894	3982	29669										
DMXL2	0	genome.wustl.edu	37	chr15	51773769	51773769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaatgagcaaaggatgagttCgaaggtagttataaaaacta	11	3	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51773769	51773769	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.5534	p.R1845Q	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	97	0	0	63	13	17.11	-	-	-	T	51773769	C	T	51773769	3	4	275	1	0	0	0	0	1	0	0	0	4631	884	31	1	3659	1	DMXL2	15	51773769	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	513271	51773769	50757623	3983	29670										
DMXL2	0	genome.wustl.edu	37	chr15	51778522	51778522	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagctgaatatcttccatttTttcaagacatacctgcaaat	4	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51778522	51778522	T	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.5230	p.K1744Q	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	157	0	0	107	13	10.83	-	-	-	G	51778522	T	G	51778522	3	3	275	1	0	0	0	0	1	0	0	0	4631	1850	64	5	3967	5	DMXL2	15	51778522	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4753	51778522	50752870	3984	29671										
DMXL2	0	genome.wustl.edu	37	chr15	51792037	51792037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtacactcccaaccttaacCaaatcatcaagatgaattgt	4	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51792037	51792037	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.3384	p.L1128F	0.997	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	174	0	0	156	35	18.32	-	-	-	A	51792037	C	A	51792037	3	1	275	1	0	0	0	0	1	0	0	0	4631	593	21	4	5833	4	DMXL2	15	51792037	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	13515	51792037	50739355	3985	29672										
DMXL2	0	genome.wustl.edu	37	chr15	51799419	51799419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcaattactactagaaaGaacttttctgaaaatggtgg	7	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51799419	51799419	G	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.2676	p.F892L	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	332	0	0	210	25	10.64	-	-	-	T	51799419	G	T	51799419	3	4	275	1	0	0	0	0	1	0	0	0	4631	933	33	2	6549	2	DMXL2	15	51799419	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7382	51799419	50731973	3986	29673										
SCG3	0	genome.wustl.edu	37	chr15	51975585	51975585	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaagaatcgaaaactgatCgatgattatgactctactaa	6	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	51975585	51975585	C	T	SNP	SCG3	ENST00000220478	human	ensembl	69_37n	1	known	silent	c.351	p.I117	0.002	NULL	NULL	-	no_errors	SCG3	HGNC	ENSG00000104112	170	0	0	114	59	33.91	-	-	-	T	51975585	C	T	51975585	2	4	275	1	0	0	0	0	0	0	0	1	13979	874	31	1		1	SCG3	15	51975585	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	176166	51975585	50555807	3987	29674										
LYSMD2	0	genome.wustl.edu	37	chr15	52016997	52016997	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattcttacctgctctcttCttttagcttcttggctgcct	6	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	52016997	52016997	C	A	SNP	LYSMD2	ENST00000267838	human	ensembl	69_37n	-1	known	nonsense	c.595	p.E199*	1.000	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD2	HGNC	ENSG00000140280	40	0	0	39	6	13.33	-	-	-	A	52016997	C	A	52016997	4	1	275	1	0	0	0	0	0	1	0	0	9192	922	32	2	60	2	LYSMD2	15	52016997	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41412	52016997	50514395	3988	29675										
TMOD3	0	genome.wustl.edu	37	chr15	52192463	52192463	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatgcgttaagagataatGaaaccctggcagagctcaag	11	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	52192463	52192463	G	T	SNP	TMOD3	ENST00000308580	human	ensembl	69_37n	1	known	nonsense	c.847	p.E283*	1.000	NULL	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	151	0	0	88	33	27.27	-	-	-	T	52192463	G	T	52192463	4	4	275	1	0	0	0	0	0	1	0	0	16330	1291	45	2	873	2	TMOD3	15	52192463	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	175466	52192463	50338929	3989	29676										
MAPK6	0	genome.wustl.edu	37	chr15	52356227	52356227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagtacaagttgatccccGaaaatatttggatggagatc	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	52356227	52356227	G	A	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.1196	p.R399Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	259	0	0	162	70	30.17	-	-	-	A	52356227	G	A	52356227	3	1	275	1	0	0	0	0	1	0	0	0	9352	1058	37	1	1214	1	MAPK6	15	52356227	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	163764	52356227	50175165	3990	29677										
MYO5C	0	genome.wustl.edu	37	chr15	52517715	52517715	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtagttctatctctttttcGaactcagagattgtctgaat	7	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	52517715	52517715	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	silent	c.3222	p.F1074	0.952	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	242	0	0	215	31	12.6	-	-	-	A	52517715	G	A	52517715	2	1	275	1	0	0	0	0	0	0	0	1	10152	1049	37	1		1	MYO5C	15	52517715	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161488	52517715	50013677	3991	29678										
MYO5A	0	genome.wustl.edu	37	chr15	52635372	52635372	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctccatcctcattcaactCatggtaatccagagcagatg	6	13	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	52635372	52635372	C	A	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	nonsense	c.3982	p.E1328*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	258	0	0	190	27	12.44	-	-	-	A	52635372	C	A	52635372	4	1	275	1	0	0	0	0	0	1	0	0	10150	835	29	2	1629	2	MYO5A	15	52635372	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117657	52635372	49896020	3992	29679										
UNC13C	0	genome.wustl.edu	37	chr15	54527271	54527271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgacagcatgccggatcttCgcagaaaaaaaactttgcct	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	54527271	54527271	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.3115	p.R1039C	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	537	0	0	266	119	30.91	-	-	-	T	54527271	C	T	54527271	3	4	275	1	0	0	0	0	1	0	0	0	17083	884	31	1	3129	1	UNC13C	15	54527271	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1891899	54527271	48004121	3993	29680										
UNC13C	0	genome.wustl.edu	37	chr15	54592515	54592515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgatgatgcttcccaagaAatagttgatgaatttgctat	8	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	54592515	54592515	A	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.4212	p.E1404D	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	412	0	0	309	46	12.96	-	-	-	C	54592515	A	C	54592515	3	2	275	1	0	0	0	0	1	0	0	0	17083	11	1	5	4254	5	UNC13C	15	54592515	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	65244	54592515	47938877	3994	29681										
CCPG1	0	genome.wustl.edu	37	chr15	55652650	55652650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatcagaacgctgctgttCgaaggttagcttccgttcca	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	55652650	55652650	C	T	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.1321	p.E441K	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	269	1	0.37	216	79	26.69	-	-	-	T	55652650	C	T	55652650	3	4	275	1	0	0	0	0	1	0	0	0	2967	893	31	1	956	1	CCPG1	15	55652650	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1060135	55652650	46878742	3995	29682										
NEDD4	0	genome.wustl.edu	37	chr15	56216855	56216855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacttaccaatcggttttCgtcaaacacttcaaaaagaa	4	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	56216855	56216855	C	T	SNP	NEDD4	ENST00000435532	human	ensembl	69_37n	-1	known	missense	c.280	p.E94K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	256	1	0.39	254	31	10.84	-	-	-	T	56216855	C	T	56216855	3	4	275	1	0	0	0	0	1	0	0	0	10382	893	31	1	4074	1	NEDD4	15	56216855	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	564205	56216855	46314537	3996	29683										
RFX7	0	genome.wustl.edu	37	chr15	56386020	56386020	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacagaagtgctggaatcGatcatattttgtgggttggc	12	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	56386020	56386020	G	A	SNP	RFX7	ENST00000423270	human	ensembl	69_37n	-1	known	silent	c.3906	p.I1302	0.033	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	78	0	0	55	18	24.66	-	-	-	A	56386020	G	A	56386020	2	1	275	1	0	0	0	0	0	0	0	1	13351	1048	37	1		1	RFX7	15	56386020	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	169165	56386020	46145372	3997	29684										
TEX9	0	genome.wustl.edu	37	chr15	56686976	56686976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaatacaaaactcttttcGaagaagcaaacaaaaagtat	4	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	56686976	56686976	G	A	SNP	TEX9	ENST00000352903	human	ensembl	69_37n	1	known	missense	c.772	p.E258K	1.000	NULL	NULL	-	no_errors	TEX9	HGNC	ENSG00000151575	229	0	0	129	47	26.7	-	-	-	A	56686976	G	A	56686976	3	1	275	1	0	0	0	0	1	0	0	0	15879	1059	37	1	806	1	TEX9	15	56686976	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	300956	56686976	45844416	3998	29685										
MNS1	0	genome.wustl.edu	37	chr15	56748602	56748602	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaagatacctgttttctcTtacttgttgcctcatctttt	4	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	56748602	56748602	T	G	SNP	MNS1	ENST00000260453	human	ensembl	69_37n	-1	known	silent	c.343	p.R115	1.000	NULL	NULL	-	no_errors	MNS1	HGNC	ENSG00000138587	898	0	0	562	231	29.09	-	-	-	G	56748602	T	G	56748602	2	3	275	1	0	0	0	0	0	0	0	1	9749	1617	56	5		5	MNS1	15	56748602	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	61626	56748602	45782790	3999	29686										
ZNF280D	0	genome.wustl.edu	37	chr15	56923863	56923863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcttcatactcaagtacctCggatggagtcagaggttcca	11	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	56923863	56923863	C	T	SNP	ZNF280D	ENST00000267807	human	ensembl	69_37n	-1	known	missense	c.2773	p.E925K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871	238	0	0	183	32	14.81	-	-	-	T	56923863	C	T	56923863	3	4	275	1	0	0	0	0	1	0	0	0	17913	893	31	1	170	1	ZNF280D	15	56923863	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	175261	56923863	45607529	4000	29687										
CGNL1	0	genome.wustl.edu	37	chr15	57731327	57731327	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggtctgggaagcgaaacaGaattaatacagatgacagga	12	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	57731327	57731327	G	T	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	missense	c.1130	p.R377I	1.000	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	50	0	0	23	7	23.33	-	-	-	T	57731327	G	T	57731327	3	4	275	1	0	0	0	0	1	0	0	0	3333	942	33	2	1132	2	CGNL1	15	57731327	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	807464	57731327	44800065	4001	29688										
RNF111	0	genome.wustl.edu	37	chr15	59323732	59323732	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggatattaatgcagaggaaGaaacgagaagtgttagctcg	13	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	59323732	59323732	G	T	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.711	p.K237N	0.937	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	361	0	0	264	36	12	-	-	-	T	59323732	G	T	59323732	3	4	275	1	0	0	0	0	1	0	0	0	13511	933	33	2	713	2	RNF111	15	59323732	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1592405	59323732	43207660	4002	29689										
RNF111	0	genome.wustl.edu	37	chr15	59368259	59368259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgccctgtttcttcctcccGagctgcaatctttggccatc	7	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	59368259	59368259	G	A	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.1793	p.R598Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	96	0	0	85	15	14.85	-	-	-	A	59368259	G	A	59368259	3	1	275	1	0	0	0	0	1	0	0	0	13511	1058	37	1	1815	1	RNF111	15	59368259	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44527	59368259	43163133	4003	29690										
FAM81A	0	genome.wustl.edu	37	chr15	59813530	59813530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagctggacagggaccagCtacagaagcaaatccagctg	12	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	59813530	59813530	C	T	SNP	FAM81A	ENST00000288228	human	ensembl	69_37n	1	known	silent	c.1060	p.L354	0.964	NULL	superfamily_Ferritin/RR-like	-	no_errors	FAM81A	HGNC	ENSG00000157470	125	0	0	70	36	33.64	-	-	-	T	59813530	C	T	59813530	2	4	275	1	0	0	0	0	0	0	0	1	5673	796	28	4		4	FAM81A	15	59813530	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	445271	59813530	42717862	4004	29691										
NARG2	0	genome.wustl.edu	37	chr15	60720842	60720842	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttataaatcaggagtgaaGaatcttctgctgcatgagat	9	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	60720842	60720842	G	T	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	missense	c.2606	p.S869Y	1.000	pfam_NARG2_C	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	138	1	0.72	123	24	16.33	-	-	-	T	60720842	G	T	60720842	3	4	275	1	0	0	0	0	1	0	0	0	10241	942	33	2	350	2	NARG2	15	60720842	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	907312	60720842	41810550	4005	29692										
NARG2	0	genome.wustl.edu	37	chr15	60760504	60760504	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaacttgctgaggcattcAaattttctcctatacgtctg	7	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	60760504	60760504	A	C	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	missense	c.164	p.L55W	1.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	185	0	0	167	26	13.47	-	-	-	C	60760504	A	C	60760504	3	2	275	1	0	0	0	0	1	0	0	0	10241	131	5	5	2836	5	NARG2	15	60760504	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	39662	60760504	41770888	4006	29693										
VPS13C	0	genome.wustl.edu	37	chr15	62274773	62274773	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accactgcattgacagttttCtataagaaaatttttttaac	4	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	62274773	62274773	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	splice_site	c.1915-1	e21-1	1.000	-	-	-	no_errors	VPS13C	HGNC	ENSG00000129003	448	0	0	266	98	26.92	-	-	-	A	62274773	C	A	62274773	5	1	275	1	0	0	0	0	0	0	1	0	17288	927	32	2	9635	2	VPS13C	15	62274773	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1514269	62274773	40256619	4007	29694										
VPS13C	0	genome.wustl.edu	37	chr15	62315720	62315720	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggcttcttttggcttatCtattaaaaaatagaaaaata	5	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	62315720	62315720	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	splice_site	c.515-1	e8-1	1.000	-	-	-	no_errors	VPS13C	HGNC	ENSG00000129003	217	1	0.46	121	15	11.03	-	-	-	A	62315720	C	A	62315720	5	1	275	1	0	0	0	0	0	0	1	0	17288	927	32	2	11087	2	VPS13C	15	62315720	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40947	62315720	40215672	4008	29695										
APH1B	0	genome.wustl.edu	37	chr15	63571492	63571492	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcgtttgtctctgtctatatCcaagaaatgttccgatttgc	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	63571492	63571492	C	T	SNP	APH1B	ENST00000261879	human	ensembl	69_37n	1	known	silent	c.246	p.I82	0.981	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1B	HGNC	ENSG00000138613	199	0	0	118	52	30.59	-	-	-	T	63571492	C	T	63571492	2	4	275	1	0	0	0	0	0	0	0	1	773	845	30	2		2	APH1B	15	63571492	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1255772	63571492	38959900	4009	29696										
HERC1	0	genome.wustl.edu	37	chr15	63908103	63908103	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcactctggccaacaaaaGaatcaagaggaatcatctag	8	10	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	63908103	63908103	G	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.13958	p.S4653Y	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	209	0	0	174	35	16.75	-	-	-	T	63908103	G	T	63908103	3	4	275	1	0	0	0	0	1	0	0	0	7108	942	33	2	639	2	HERC1	15	63908103	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336611	63908103	38623289	4010	29697										
HERC1	0	genome.wustl.edu	37	chr15	63908799	63908799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccagaggcttctttgtgcGaatggcaacccccattaaaa	9	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	63908799	63908799	G	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.13771	p.R4591C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	175	0	0	143	28	16.37	-	-	-	A	63908799	G	A	63908799	3	1	275	1	0	0	0	0	1	0	0	0	7108	1058	37	1	830	1	HERC1	15	63908799	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	696	63908799	38622593	4011	29698										
HERC1	0	genome.wustl.edu	37	chr15	63932406	63932406	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagatctggaacggtaaaaGattctggaaactgggctcca	11	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	63932406	63932406	G	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.11846	p.S3949Y	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	272	0	0	214	27	11.2	-	-	-	T	63932406	G	T	63932406	3	4	275	1	0	0	0	0	1	0	0	0	7108	942	33	2	2811	2	HERC1	15	63932406	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23607	63932406	38598986	4012	29699										
HERC1	0	genome.wustl.edu	37	chr15	64005029	64005029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaaatcagattcactcctcGatttgatcagtctataattt	4	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	64005029	64005029	G	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.4529	p.S1510L	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	200	0	0	143	22	13.33	-	-	-	A	64005029	G	A	64005029	3	1	275	1	0	0	0	0	1	0	0	0	7108	1059	37	1	10276	1	HERC1	15	64005029	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72623	64005029	38526363	4013	29700										
HERC1	0	genome.wustl.edu	37	chr15	64025137	64025137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttactgtataaaatcctaAatttcttaagagggtcttca	5	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	64025137	64025137	A	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.2854	p.L952V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	120	0	0	79	45	36.29	-	-	-	C	64025137	A	C	64025137	3	2	275	1	0	0	0	0	1	0	0	0	7108	11	1	5	11991	5	HERC1	15	64025137	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	20108	64025137	38506255	4014	29701										
CILP	0	genome.wustl.edu	37	chr15	65495780	65495780	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagctctccgtgcttttgtCtcagggttcatcaccatgta	8	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	65495780	65495780	C	A	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.948	p.E316D	0.996	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	133	0	0	86	23	21.1	-	-	-	A	65495780	C	A	65495780	3	1	275	1	0	0	0	0	1	0	0	0	3458	912	32	2	2618	2	CILP	15	65495780	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1470643	65495780	37035612	4015	29702										
DPP8	0	genome.wustl.edu	37	chr15	65790262	65790262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgttagatatccaaatatCgttgctatgtataaaagcaa	7	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	65790262	65790262	C	T	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.703	p.D235N	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	174	0	0	156	24	13.19	-	-	-	T	65790262	C	T	65790262	3	4	275	1	0	0	0	0	1	0	0	0	4767	884	31	1	2057	1	DPP8	15	65790262	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	294482	65790262	36741130	4016	29703										
SLC24A1	0	genome.wustl.edu	37	chr15	65916671	65916671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccttcaaaacctagctccGaaatggggggtaagatgctg	12	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	65916671	65916671	G	A	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	missense	c.253	p.E85K	0.001	tigrfam_K-dep_Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	73	0	0	99	15	13.16	-	-	-	A	65916671	G	A	65916671	3	1	275	1	0	0	0	0	1	0	0	0	14554	1059	37	1		1	SLC24A1	15	65916671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	126409	65916671	36614721	4017	29704										
DENND4A	0	genome.wustl.edu	37	chr15	65960037	65960037	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgccattctaaacctaaaGaatcctgttgaataaataaa	6	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	65960037	65960037	G	T	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	missense	c.4988	p.S1663Y	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485	156	0	0	108	25	18.8	-	-	-	T	65960037	G	T	65960037	3	4	275	1	0	0	0	0	1	0	0	0	4469	942	33	2	752	2	DENND4A	15	65960037	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43366	65960037	36571355	4018	29705										
TIPIN	0	genome.wustl.edu	37	chr15	66629433	66629433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggattgtccagaatgtcttCgtttaatccatttgactcct	7	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	66629433	66629433	C	T	SNP	TIPIN	ENST00000261881	human	ensembl	69_37n	-1	known	missense	c.769	p.E257K	0.000	NULL	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131	163	0	0	115	32	21.77	-	-	-	T	66629433	C	T	66629433	3	4	275	1	0	0	0	0	1	0	0	0	16020	893	31	1	140	1	TIPIN	15	66629433	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	669396	66629433	35901959	4019	29706										
TIPIN	0	genome.wustl.edu	37	chr15	66641443	66641443	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaaatagggagatcaagtcGaattcgttttaaacaggtct	9	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	66641443	66641443	G	A	SNP	TIPIN	ENST00000261881	human	ensembl	69_37n	-1	known	nonsense	c.430	p.R144*	1.000	pfam_Swi3	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131	251	0	0	175	46	20.81	-	-	-	A	66641443	G	A	66641443	4	1	275	1	0	0	0	0	0	1	0	0	16020	1066	37	1	487	1	TIPIN	15	66641443	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	12010	66641443	35889949	4020	29707										
MAP2K1	0	genome.wustl.edu	37	chr15	66679697	66679697	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtccaaaatgcccaagaaGaagccgacgcccatccagct	10	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	66679697	66679697	G	T	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	missense	c.12	p.K4N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	91	0	0	33	7	17.5	-	-	-	T	66679697	G	T	66679697	3	4	275	1	0	0	0	0	1	0	0	0	9307	933	33	2	14	2	MAP2K1	15	66679697	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38254	66679697	35851695	4021	29708										
MAP2K1	0	genome.wustl.edu	37	chr15	66729197	66729197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctatggtgcgttctacagCgatggcgagatcagtatctg	12	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	66729197	66729197	C	T	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	silent	c.405	p.S135	0.170	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	258	0	0	293	44	13.02	-	-	-	T	66729197	C	T	66729197	2	4	275	1	0	0	0	0	0	0	0	1	9307	767	27	1		1	MAP2K1	15	66729197	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49500	66729197	35802195	4022	29709										
LCTL	0	genome.wustl.edu	37	chr15	66856310	66856310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcggtagtggttgacgtgCagttccctcagcagaatgat	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	66856310	66856310	C	T	SNP	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	silent	c.309	p.L103	0.851	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	309	0	0	184	28	13.21	-	-	-	T	66856310	C	T	66856310	2	4	275	1	0	0	0	0	0	0	0	1	8748	697	25	4		4	LCTL	15	66856310	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	127113	66856310	35675082	4023	29710										
ITGA11	0	genome.wustl.edu	37	chr15	68642962	68642962	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcattgcttaccttccagGctgaagattctgtcccccag	8	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	68642962	68642962	G	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.1053	p.S351	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	150	0	0	71	27	27.27	-	-	-	A	68642962	G	A	68642962	2	1	275	1	0	0	0	0	0	0	0	1	7928	1194	42	4		4	ITGA11	15	68642962	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1786652	68642962	33888430	4024	29711										
ANP32A	0	genome.wustl.edu	37	chr15	69076865	69076865	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggagcttgaacacattttCtcggtagtcgttcaggttgg	13	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	69076865	69076865	C	A	SNP	ANP32A	ENST00000465139	human	ensembl	69_37n	-1	known	nonsense	c.397	p.E133*	1.000	smart_U2A'_phosphoprotein32A_C	pfam_Leu-rich_rpt,smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32A	HGNC	ENSG00000140350	257	0	0	181	23	11.27	-	-	-	A	69076865	C	A	69076865	4	1	275	1	0	0	0	0	0	1	0	0	704	922	32	2	368	2	ANP32A	15	69076865	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	433903	69076865	33454527	4025	29712										
KIF23	0	genome.wustl.edu	37	chr15	69737380	69737380	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgaaactaaactaattaaGgtaaaaaactaattttcaca	3	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	69737380	69737380	G	T	SNP	KIF23	ENST00000260363	human	ensembl	69_37n	1	known	missense	c.2631	p.K877N	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807	61	0	0	61	7	10.29	-	-	-	T	69737380	G	T	69737380	3	4	275	1	0	0	0	0	1	0	0	0	8343	1014	35	4	2705	4	KIF23	15	69737380	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	660515	69737380	32794012	4026	29713										
UACA	0	genome.wustl.edu	37	chr15	70960319	70960319	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaatatttcattcttatCttttatttttacaaattcct	0	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	70960319	70960319	C	A	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.2704	p.D902Y	0.143	superfamily_Prefoldin	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	155	0	0	82	26	23.85	-	-	-	A	70960319	C	A	70960319	3	1	275	1	0	0	0	0	1	0	0	0	16921	913	32	2	1562	2	UACA	15	70960319	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1222939	70960319	31571073	4027	29714										
UACA	0	genome.wustl.edu	37	chr15	70960615	70960615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgtttctcaggaggtacaAacacagtttctaggcggctt	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	70960615	70960615	A	C	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.2408	p.F803C	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	341	0	0	248	51	17.06	-	-	-	C	70960615	A	C	70960615	3	2	275	1	0	0	0	0	1	0	0	0	16921	14	1	5	1858	5	UACA	15	70960615	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	296	70960615	31570777	4028	29715										
LRRC49	0	genome.wustl.edu	37	chr15	71196979	71196979	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttataactcggatacaaAatatttctaatctacagaag	4	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	71196979	71196979	A	C	SNP	LRRC49	ENST00000260382	human	ensembl	69_37n	1	known	missense	c.385	p.N129H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	308	0	0	265	45	14.52	-	-	-	C	71196979	A	C	71196979	3	2	275	1	0	0	0	0	1	0	0	0	9072	14	1	5	403	5	LRRC49	15	71196979	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	236364	71196979	31334413	4029	29716										
LRRC49	0	genome.wustl.edu	37	chr15	71276438	71276438	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaactttttcataggagaaGaaaaggttaacaattaacaa	6	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	71276438	71276438	G	T	SNP	LRRC49	ENST00000260382	human	ensembl	69_37n	1	known	missense	c.1011	p.K337N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	232	0	0	159	40	20	-	-	-	T	71276438	G	T	71276438	3	4	275	1	0	0	0	0	1	0	0	0	9072	933	33	2	1053	2	LRRC49	15	71276438	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	79459	71276438	31254954	4030	29717										
MYO9A	0	genome.wustl.edu	37	chr15	72338405	72338405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcatgcttaaagcgatttCgtaggttttctaagagagtt	9	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	72338405	72338405	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.500	p.R167Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	115	1	0.86	105	18	14.63	-	-	-	T	72338405	C	T	72338405	3	4	275	1	0	0	0	0	1	0	0	0	10156	884	31	1	7310	1	MYO9A	15	72338405	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1061967	72338405	30192987	4031	29718										
PARP6	0	genome.wustl.edu	37	chr15	72553997	72553997	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcctgctgggtcttcaaGaaatcattgctcagatgttt	8	9	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	72553997	72553997	G	T	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.447	p.F149L	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	620	0	0	491	84	14.61	-	-	-	T	72553997	G	T	72553997	3	4	275	1	0	0	0	0	1	0	0	0	11537	933	33	2	1509	2	PARP6	15	72553997	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	215592	72553997	29977395	4032	29719										
PARP6	0	genome.wustl.edu	37	chr15	72557476	72557476	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcctcaacacaataggttCtgtccggaggaccttccagg	10	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	72557476	72557476	C	A	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	nonsense	c.274	p.E92*	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	180	0	0	160	25	13.51	-	-	-	A	72557476	C	A	72557476	4	1	275	1	0	0	0	0	0	1	0	0	11537	922	32	2	1690	2	PARP6	15	72557476	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3479	72557476	29973916	4033	29720										
ADPGK	0	genome.wustl.edu	37	chr15	73044753	73044753	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctccaaggcctacagttcGaatggggtctttacacacca	8	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	73044753	73044753	G	A	SNP	ADPGK	ENST00000311669	human	ensembl	69_37n	-1	known	nonsense	c.1420	p.R474*	0.996	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	116	0	0	62	10	13.89	-	-	-	A	73044753	G	A	73044753	4	1	275	1	0	0	0	0	0	1	0	0	330	1066	37	1	74	1	ADPGK	15	73044753	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	487277	73044753	29486639	4034	29721										
TBC1D21	0	genome.wustl.edu	37	chr15	74180789	74180789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcctgcaacaacctcatcGaccttgatgctgatgagctg	10	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	74180789	74180789	G	A	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	missense	c.913	p.D305N	0.998	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	159	0	0	140	17	10.76	-	-	-	A	74180789	G	A	74180789	3	1	275	1	0	0	0	0	1	0	0	0	15702	1058	37	1	951	1	TBC1D21	15	74180789	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1136036	74180789	28350603	4035	29722										
STOML1	0	genome.wustl.edu	37	chr15	74282711	74282711	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttcagggcaaaccagccaGaaatggggaaggtgaccaac	12	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	74282711	74282711	G	T	SNP	STOML1	ENST00000316900	human	ensembl	69_37n	-1	known	missense	c.221	p.S74Y	1.000	NULL	pfam_Band_7,pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom,smart_Band_7,prints_Stomatin	-	no_errors	STOML1	HGNC	ENSG00000067221	449	0	0	253	32	11.23	-	-	-	T	74282711	G	T	74282711	3	4	275	1	0	0	0	0	1	0	0	0	15404	942	33	2	999	2	STOML1	15	74282711	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101922	74282711	28248681	4036	29723										
PML	0	genome.wustl.edu	37	chr15	74328401	74328401	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacagagtagcactcattaAttcttggttaaggaatgaat	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	74328401	74328401	A	G	SNP	PML	ENST00000395132	human	ensembl	69_37n	1	known	silent	c.1308	p.*436	0.000	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464	208	0	0	161	22	12.02	-	-	-	G	74328401	A	G	74328401	2	3	275	1	0	0	0	0	0	0	0	1	12209	108	4	5		5	PML	15	74328401	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	45690	74328401	28202991	4037	29724										
STRA6	0	genome.wustl.edu	37	chr15	74494642	74494642	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctttgaccccaggcgagaGaaaaaaaaagccactacaga	8	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	74494642	74494642	G	T	SNP	STRA6	ENST00000573456	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868	65	0	0	58	9	12.86	-	-	-	T	74494642	G	T	74494642	1	4	275	0	1	0	0	0	0	0	0	0	15413	957	33	2		2	STRA6	15	74494642	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	166241	74494642	28036750	4038	29725										
LMAN1L	0	genome.wustl.edu	37	chr15	75111579	75111579	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttggtccctggaggtttCtttggggtctcagcagccac	12	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	75111579	75111579	C	A	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	missense	c.684	p.F228L	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	142	0	0	62	26	29.55	-	-	-	A	75111579	C	A	75111579	3	1	275	1	0	0	0	0	1	0	0	0	8893	912	32	2	706	2	LMAN1L	15	75111579	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	616937	75111579	27419813	4039	29726										
SIN3A	0	genome.wustl.edu	37	chr15	75694278	75694278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagacagcgtaggaaattttCgtaggcttctgcactccgaa	10	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	75694278	75694278	C	T	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.1441	p.E481K	1.000	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	258	0	0	185	37	16.67	-	-	-	T	75694278	C	T	75694278	3	4	275	1	0	0	0	0	1	0	0	0	14414	893	31	1	2428	1	SIN3A	15	75694278	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	582699	75694278	26837114	4040	29727										
UBE2Q2	0	genome.wustl.edu	37	chr15	76136685	76136685	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaagtttgcgtttaaggaGaaactgacaatgagaatgga	11	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	76136685	76136685	G	T	SNP	UBE2Q2	ENST00000562635	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBE2Q2	HGNC	ENSG00000140367	193	0	0	87	30	25.64	-	-	-	T	76136685	G	T	76136685	1	4	275	0	1	0	0	0	0	0	0	0	16967	957	33	2		2	UBE2Q2	15	76136685	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	442407	76136685	26394707	4041	29728										
NRG4	0	genome.wustl.edu	37	chr15	76301629	76301629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgggaccacagggctcttCgtgatctagaacacatacat	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	76301629	76301629	C	T	SNP	NRG4	ENST00000394907	human	ensembl	69_37n	-1	known	missense	c.16	p.E6K	1.000	pfscan_EG-like_dom	smart_EGF-like,pfscan_EG-like_dom	-	no_errors	NRG4	HGNC	ENSG00000169752	308	0	0	178	58	24.47	-	-	-	T	76301629	C	T	76301629	3	4	275	1	0	0	0	0	1	0	0	0	10723	893	31	1	347	1	NRG4	15	76301629	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	164944	76301629	26229763	4042	29729										
SCAPER	0	genome.wustl.edu	37	chr15	77092604	77092604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcacccaaaatttaagcttCgtcgagcatttgatgttaca	6	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	77092604	77092604	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.596	p.R199Q	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	287	0	0	177	30	14.49	-	-	-	T	77092604	C	T	77092604	3	4	275	1	0	0	0	0	1	0	0	0	13965	884	31	1	3748	1	SCAPER	15	77092604	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	790975	77092604	25438788	4043	29730										
SCAPER	0	genome.wustl.edu	37	chr15	77096879	77096879	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagagctcattacctgctTtgagcatctgtcttctctag	8	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	77096879	77096879	T	C	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	silent	c.489	p.Q163	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	285	0	0	202	59	22.61	-	-	-	C	77096879	T	C	77096879	2	2	275	1	0	0	0	0	0	0	0	1	13965	1838	64	5		5	SCAPER	15	77096879	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4275	77096879	25434513	4044	29731										
ACSBG1	0	genome.wustl.edu	37	chr15	78471059	78471059	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggcctcacaagtcttgtcCtccatgttcaggtagcccat	8	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	78471059	78471059	C	T	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	silent	c.1599	p.E533	0.981	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	70	0	0	27	10	27.03	-	-	-	T	78471059	C	T	78471059	2	4	275	1	0	0	0	0	0	0	0	1	173	680	24	4		4	ACSBG1	15	78471059	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1374180	78471059	24060333	4045	29732										
IREB2	0	genome.wustl.edu	37	chr15	78755405	78755405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagtgccctttttccctgCccgtgttcttcttcaagatt	7	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	78755405	78755405	C	T	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.248	p.A83V	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	569	0	0	339	95	21.89	-	-	-	T	78755405	C	T	78755405	3	4	275	1	0	0	0	0	1	0	0	0	7880	739	26	4	258	4	IREB2	15	78755405	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	284346	78755405	23775987	4046	29733										
CHRNA5	0	genome.wustl.edu	37	chr15	78880682	78880682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagatgtaaaattaagatgGaaccctgatgactatggtgg	11	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	78880682	78880682	G	T	SNP	CHRNA5	ENST00000394802	human	ensembl	69_37n	1	putative	nonsense	c.145	p.E49*	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHRNA5	HGNC	ENSG00000169684	374	0	0	338	106	23.87	-	-	-	T	78880682	G	T	78880682	4	4	275	1	0	0	0	0	0	1	0	0	3415	1183	41	2	344	2	CHRNA5	15	78880682	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	125277	78880682	23650710	4047	29734										
CHRNB4	0	genome.wustl.edu	37	chr15	78922160	78922160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagggtgcagttctgctggtCgaagggaaagtacttcacct	14	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	78922160	78922160	C	T	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.487	p.D163N	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	231	0	0	148	72	32.73	-	-	-	T	78922160	C	T	78922160	3	4	275	1	0	0	0	0	1	0	0	0	3422	884	31	1	1017	1	CHRNB4	15	78922160	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41478	78922160	23609232	4048	29735										
MORF4L1	0	genome.wustl.edu	37	chr15	79183337	79183337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctctccttttaggaaaacGaaaaagaacaaacagaaaag	6	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	79183337	79183337	G	A	SNP	MORF4L1	ENST00000559751	human	ensembl	69_37n	1	novel	missense	c.377	p.R126Q	0.648	superfamily_Chromodomain-like	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like	-	no_start_codon:pseudogene:no_stop_codon	MORF4L1	HGNC	ENSG00000185787	159	0	0	104	32	23.53	-	-	-	A	79183337	G	A	79183337	3	1	275	1	0	0	0	0	1	0	0	0	9778	1045	37	1	473	1	MORF4L1	15	79183337	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	261177	79183337	23348055	4049	29736										
RASGRF1	0	genome.wustl.edu	37	chr15	79282606	79282606	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtttcatccatccttgtccGaagaactccctgtaggaagt	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	79282606	79282606	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.3189	p.F1063	0.990	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	267	0	0	288	38	11.62	-	-	-	A	79282606	G	A	79282606	2	1	275	1	0	0	0	0	0	0	0	1	13155	1049	37	1		1	RASGRF1	15	79282606	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	99269	79282606	23248786	4050	29737										
RASGRF1	0	genome.wustl.edu	37	chr15	79317728	79317728	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttagaaaacaggaagcactgTcgctcgccctctttctttag	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	79317728	79317728	T	C	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.1470	p.R490	0.368	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	169	0	0	173	22	11.17	-	-	-	C	79317728	T	C	79317728	2	2	275	1	0	0	0	0	0	0	0	1	13155	1654	58	5		5	RASGRF1	15	79317728	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	35122	79317728	23213664	4051	29738										
ARNT2	0	genome.wustl.edu	37	chr15	80762577	80762577	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagagaatcatagtgaaatCgaaaggcgcagacggaacaa	12	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	80762577	80762577	C	T	SNP	ARNT2	ENST00000303329	human	ensembl	69_37n	1	known	silent	c.213	p.I71	0.330	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379	117	0	0	83	22	20.95	-	-	-	T	80762577	C	T	80762577	2	4	275	1	0	0	0	0	0	0	0	1	970	874	31	1		1	ARNT2	15	80762577	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1444849	80762577	21768815	4052	29739										
TMC3	0	genome.wustl.edu	37	chr15	81637115	81637115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagagaaccacctgaccaaCgtatgtctcccagcactggt	8	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	81637115	81637115	C	T	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	missense	c.1510	p.V504I	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	157	0	0	120	38	24.05	-	-	-	T	81637115	C	T	81637115	3	4	275	1	0	0	0	0	1	0	0	0	16081	536	19	1	1832	1	TMC3	15	81637115	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	874538	81637115	20894277	4053	29740										
TMC3	0	genome.wustl.edu	37	chr15	81637272	81637272	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccgagatgtggaccatttCtcttcttcaggggctgtcct	12	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	81637272	81637272	C	A	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	missense	c.1353	p.E451D	0.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	429	0	0	252	87	25.66	-	-	-	A	81637272	C	A	81637272	3	1	275	1	0	0	0	0	1	0	0	0	16081	912	32	2	1989	2	TMC3	15	81637272	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	157	81637272	20894120	4054	29741										
MEX3B	0	genome.wustl.edu	37	chr15	82335830	82335830	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctccacccgggtcgctgcGcacccggcgagccaggtggt	14	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	82335830	82335830	G	A	SNP	MEX3B	ENST00000329713	human	ensembl	69_37n	-1	known	missense	c.1381	p.R461C	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496	13	0	0	12	7	36.84	-	-	-	A	82335830	G	A	82335830	3	1	275	1	0	0	0	0	1	0	0	0	9581	1087	38	1	332	1	MEX3B	15	82335830	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	698558	82335830	20195562	4055	29742										
MEX3B	0	genome.wustl.edu	37	chr15	82336030	82336030	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcagaagaagagcaggaaGaagataccggagctgcaggt	15	6	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	82336030	82336030	G	T	SNP	MEX3B	ENST00000329713	human	ensembl	69_37n	-1	known	missense	c.1181	p.S394Y	0.121	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496	87	0	0	36	8	18.18	-	-	-	T	82336030	G	T	82336030	3	4	275	1	0	0	0	0	1	0	0	0	9581	942	33	2	532	2	MEX3B	15	82336030	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	200	82336030	20195362	4056	29743										
CPEB1	0	genome.wustl.edu	37	chr15	83222297	83222297	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaaacacggaaggtgttaActaatccagctgcaaagaga	9	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	83222297	83222297	A	C	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	missense	c.983	p.V328G	1.000	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	285	0	0	300	54	15.21	-	-	-	C	83222297	A	C	83222297	3	2	275	1	0	0	0	0	1	0	0	0	3830	43	2	5	741	5	CPEB1	15	83222297	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	886267	83222297	19309095	4057	29744										
CPEB1	0	genome.wustl.edu	37	chr15	83226725	83226725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcccagtgggttatggaGcatgctcagtactaggagga	13	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	83226725	83226725	G	A	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	missense	c.391	p.L131F	1.000	NULL	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	123	0	0	82	38	31.67	-	-	-	A	83226725	G	A	83226725	3	1	275	1	0	0	0	0	1	0	0	0	3830	971	34	4	1345	4	CPEB1	15	83226725	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4428	83226725	19304667	4058	29745										
AP3B2	0	genome.wustl.edu	37	chr15	83331507	83331507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgggagtgcccacatgcagGcccttgatgggggtatcaga	15	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	83331507	83331507	G	A	SNP	AP3B2	ENST00000261722	human	ensembl	69_37n	-1	known	silent	c.2715	p.G905	1.000	superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_complex_bsu	-	no_errors	AP3B2	HGNC	ENSG00000103723	96	0	0	66	33	33.33	-	-	-	A	83331507	G	A	83331507	2	1	275	1	0	0	0	0	0	0	0	1	746	1190	42	4		4	AP3B2	15	83331507	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	104782	83331507	19199885	4059	29746										
BTBD1	0	genome.wustl.edu	37	chr15	83710631	83710631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagctccaaaaagtcgactTtctcgaatactgagtgtgtc	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	83710631	83710631	T	G	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	missense	c.711	p.E237D	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	306	0	0	253	32	11.23	-	-	-	G	83710631	T	G	83710631	3	3	275	1	0	0	0	0	1	0	0	0	1545	1838	64	5	757	5	BTBD1	15	83710631	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	379124	83710631	18820761	4060	29747										
BNC1	0	genome.wustl.edu	37	chr15	83926268	83926268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgtgtctgtttcgactgcGaacagacgaaaacatggtgt	12	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	83926268	83926268	G	A	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2911	p.R971C	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	205	0	0	146	24	14.12	-	-	-	A	83926268	G	A	83926268	3	1	275	1	0	0	0	0	1	0	0	0	1479	1058	37	1	77	1	BNC1	15	83926268	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	215637	83926268	18605124	4061	29748										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84539559	84539559	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atattttaattttagttattGaatcaaaaacacttcaagga	4	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	84539559	84539559	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	nonsense	c.808	p.E270*	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	145	1	0.68	81	12	12.9	-	-	-	T	84539559	G	T	84539559	4	4	275	1	0	0	0	0	0	1	0	0	276	1291	45	2	838	2	ADAMTSL3	15	84539559	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	613291	84539559	17991833	4062	29749										
ZNF592	0	genome.wustl.edu	37	chr15	85327166	85327166	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgcagaggcccccagcgaGatgccaggggatgaggtgcc	16	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	85327166	85327166	G	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.1260	p.E420D	0.120	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	125	1	0.79	100	19	15.97	-	-	-	T	85327166	G	T	85327166	3	4	275	1	0	0	0	0	1	0	0	0	18118	933	33	2	1262	2	ZNF592	15	85327166	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	787607	85327166	17204226	4063	29750										
SLC28A1	0	genome.wustl.edu	37	chr15	85433736	85433736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagcacatgcagctgtttcGatggatcggcacaggcctgc	14	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	85433736	85433736	G	A	SNP	SLC28A1	ENST00000286749	human	ensembl	69_37n	1	known	missense	c.248	p.R83Q	0.041	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222	99	0	0	66	10	13.16	-	-	-	A	85433736	G	A	85433736	3	1	275	1	0	0	0	0	1	0	0	0	14620	1058	37	1	258	1	SLC28A1	15	85433736	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	106570	85433736	17097656	4064	29751										
AKAP13	0	genome.wustl.edu	37	chr15	86123532	86123532	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataacaaaggccaacgaaaaGatgtgaaactagataaacct	7	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	86123532	86123532	G	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.2233	p.D745Y	0.023	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	82	0	0	74	10	11.9	-	-	-	T	86123532	G	T	86123532	3	4	275	1	0	0	0	0	1	0	0	0	449	942	33	2	2255	2	AKAP13	15	86123532	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	689796	86123532	16407860	4065	29752										
AGBL1	0	genome.wustl.edu	37	chr15	87099511	87099511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctcacccagtggatggcCttcaggtattggagcagcat	14	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	87099511	87099511	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.2914	p.L972F	0.131	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	388	0	0	219	70	24.22	-	-	-	T	87099511	C	T	87099511	3	4	275	1	0	0	0	0	1	0	0	0	375	681	24	4	2992	4	AGBL1	15	87099511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	975979	87099511	15431881	4066	29753										
DET1	0	genome.wustl.edu	37	chr15	89060117	89060117	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taggggctaccgctgtaagaCtgagcactgatggggagctg	16	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	89060117	89060117	C	A	SNP	DET1	ENST00000444300	human	ensembl	69_37n	-1	known	missense	c.1392	p.Q464H	1.000	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	318	0	0	165	70	29.79	-	-	-	A	89060117	C	A	89060117	3	1	275	1	0	0	0	0	1	0	0	0	4486	564	20	4	301	4	DET1	15	89060117	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1960606	89060117	13471275	4067	29754										
ACAN	0	genome.wustl.edu	37	chr15	89401540	89401540	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgaggtcagtggagaatcCtccagagctgagattgggag	16	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	89401540	89401540	C	A	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	silent	c.5724	p.S1908	0.971	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	92	0	0	28	19	40.43	-	-	-	A	89401540	C	A	89401540	2	1	275	1	0	0	0	0	0	0	0	1	117	668	24	4		4	ACAN	15	89401540	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	341423	89401540	13129852	4068	29755										
FANCI	0	genome.wustl.edu	37	chr15	89828358	89828358	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttcacagccattacaattCtgtcgccaatgaaacttttt	5	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	89828358	89828358	C	T	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.1730	p.S577F	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	196	0	0	151	26	14.61	-	-	-	T	89828358	C	T	89828358	3	4	275	1	0	0	0	0	1	0	0	0	5715	913	32	2	1796	2	FANCI	15	89828358	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	426818	89828358	12703034	4069	29756										
PLIN1	0	genome.wustl.edu	37	chr15	90213326	90213326	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagtgttggcagcaaattcCgcagtgtctctggccacccc	11	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	90213326	90213326	C	T	SNP	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	silent	c.483	p.A161	0.000	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	81	0	0	35	8	18.6	-	-	-	T	90213326	C	T	90213326	2	4	275	1	0	0	0	0	0	0	0	1	12163	639	23	1		1	PLIN1	15	90213326	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	384968	90213326	12318066	4070	29757										
WDR93	0	genome.wustl.edu	37	chr15	90255298	90255298	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgtataaagatggagatCtctcaaggaggggactttgc	12	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	90255298	90255298	C	A	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	silent	c.603	p.I201	0.311	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	247	0	0	172	73	29.67	-	-	-	A	90255298	C	A	90255298	2	1	275	1	0	0	0	0	0	0	0	1	17437	903	32	2		2	WDR93	15	90255298	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	41972	90255298	12276094	4071	29758										
ANPEP	0	genome.wustl.edu	37	chr15	90349347	90349347	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaggtactcggtgggctcCaccagctcagtcttgtcaat	10	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	90349347	90349347	C	A	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	silent	c.468	p.V156	0.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	145	0	0	55	16	22.54	-	-	-	A	90349347	C	A	90349347	2	1	275	1	0	0	0	0	0	0	0	1	709	581	21	4		4	ANPEP	15	90349347	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	94049	90349347	12182045	4072	29759										
ST8SIA2	0	genome.wustl.edu	37	chr15	92981732	92981732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagctcctccccaggacttCgccactgaagaataagcact	8	15	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	92981732	92981732	C	T	SNP	ST8SIA2	ENST00000268164	human	ensembl	69_37n	1	known	missense	c.440	p.S147L	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557	156	0	0	79	32	28.83	-	-	-	T	92981732	C	T	92981732	3	4	275	1	0	0	0	0	1	0	0	0	15323	893	31	1	454	1	ST8SIA2	15	92981732	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2632385	92981732	9549660	4073	29760										
C15orf32	0	genome.wustl.edu	37	chr15	93015504	93015504	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaagaggagaaggaacggcTccccctttctcggcgaggcc	13	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	93015504	93015504	T	G	SNP	C15orf32	ENST00000333334	human	ensembl	69_37n	1	known	silent	c.126	p.A42	0.001	NULL	NULL	-	no_errors	C15orf32	HGNC	ENSG00000183643	192	0	0	116	43	27.04	-	-	-	G	93015504	T	G	93015504	2	3	275	1	0	0	0	0	0	0	0	1	1802	1538	54	5		5	C15orf32	15	93015504	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	33772	93015504	9515888	4074	29761										
CHD2	0	genome.wustl.edu	37	chr15	93470541	93470541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcagacaagaaccatcgcGatttaatattaaggaagagg	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	93470541	93470541	G	A	SNP	CHD2	ENST00000420239	human	ensembl	69_37n	1	known	missense	c.362	p.R121Q	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	364	0	0	182	87	32.34	-	-	-	A	93470541	G	A	93470541	3	1	275	1	0	0	0	0	1	0	0	0	3354	1058	37	1	372	1	CHD2	15	93470541	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	455037	93470541	9060851	4075	29762										
CHD2	0	genome.wustl.edu	37	chr15	93496780	93496780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaacgtagtggtttacataGgtgacctgatgagcagaaat	11	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	93496780	93496780	G	A	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.1696	p.G566S	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	240	0	0	157	19	10.73	-	-	-	A	93496780	G	A	93496780	3	1	275	1	0	0	0	0	1	0	0	0	3354	1000	35	4	1750	4	CHD2	15	93496780	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26239	93496780	9034612	4076	29763										
CHD2	0	genome.wustl.edu	37	chr15	93536106	93536106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggctggagtgcatagcacGtgatgctgagctggtagata	15	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	93536106	93536106	G	A	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.3473	p.R1158H	0.989	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	186	0	0	104	22	17.32	-	-	-	A	93536106	G	A	93536106	3	1	275	1	0	0	0	0	1	0	0	0	3354	1145	40	1	3583	1	CHD2	15	93536106	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39326	93536106	8995286	4077	29764										
TTC23	0	genome.wustl.edu	37	chr15	99768843	99768843	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttgttttggaacttcttTctatgagtgatgctaacagc	9	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	99768843	99768843	T	C	SNP	TTC23	ENST00000262074	human	ensembl	69_37n	-1	known	silent	c.75	p.R25	0.000	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852	309	0	0	246	87	26.13	-	-	-	C	99768843	T	C	99768843	2	2	275	1	0	0	0	0	0	0	0	1	16787	1780	62	5		5	TTC23	15	99768843	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6232737	99768843	2762549	4078	29765										
LYSMD4	0	genome.wustl.edu	37	chr15	100269825	100269825	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcagaaggggtttcagttCtttgtgggtctccatcagga	13	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	100269825	100269825	C	A	SNP	LYSMD4	ENST00000344791	human	ensembl	69_37n	-1	known	nonsense	c.397	p.E133*	0.946	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060	50	0	0	49	17	25.76	-	-	-	A	100269825	C	A	100269825	4	1	275	1	0	0	0	0	0	1	0	0	9194	922	32	2	500	2	LYSMD4	15	100269825	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	500982	100269825	2261567	4079	29766										
ASB7	0	genome.wustl.edu	37	chr15	101188558	101188558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacttgcaggacctgtgccGaattaaaattcgacaatgta	8	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	101188558	101188558	G	A	SNP	ASB7	ENST00000332783	human	ensembl	69_37n	1	known	missense	c.848	p.R283Q	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475	224	0	0	145	19	11.38	-	-	-	A	101188558	G	A	101188558	3	1	275	1	0	0	0	0	1	0	0	0	1032	1058	37	1	866	1	ASB7	15	101188558	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	918733	101188558	1342834	4080	29767										
ALDH1A3	0	genome.wustl.edu	37	chr15	101433160	101433160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcttccagatgacaacgtCgtgtgcttcaccaggcatga	9	13	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	101433160	101433160	C	T	SNP	ALDH1A3	ENST00000558033	human	ensembl	69_37n	1	known	missense	c.356	p.S119L	0.353	NULL	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	103	0	0	43	26	37.68	-	-	-	T	101433160	C	T	101433160	3	4	275	1	0	0	0	0	1	0	0	0	492	871	31	1	504	1	ALDH1A3	15	101433160	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	244602	101433160	1098232	4081	29768										
LRRK1	0	genome.wustl.edu	37	chr15	101597072	101597072	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgcccaggtagatatgttCtcctatggaatggtgctcta	11	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	15	101597072	101597072	C	A	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.4344	p.F1448L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	54	0	0	23	5	17.86	-	-	-	A	101597072	C	A	101597072	3	1	275	1	0	0	0	0	1	0	0	0	9098	912	32	2	4450	2	LRRK1	15	101597072	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	163912	101597072	934320	4082	29769										
TELO2	0	genome.wustl.edu	37	chr16	1557316	1557316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggtgtccaggtggctgtgGccatgggcaaggccctgctg	17	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	1557316	1557316	G	A	SNP	TELO2	ENST00000262319	human	ensembl	69_37n	1	known	missense	c.2236	p.A746T	0.050	superfamily_ARM-type_fold	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	22	0	0	16	8	33.33	-	-	-	A	1557316	G	A	1557316	3	1	275	1	0	0	0	0	1	0	0	0	15852	1203	42	4	2306	4	TELO2	16	1557316	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		1557316	88797437	4083	29770										
IFT140	0	genome.wustl.edu	37	chr16	1607968	1607968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatggatttgaaggcttcGtccatgtctcctatggtgac	11	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	1607968	1607968	G	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.2367	p.D789	0.498	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	82	0	0	42	6	12.5	-	-	-	A	1607968	G	A	1607968	2	1	275	1	0	0	0	0	0	0	0	1	7610	1136	40	1		1	IFT140	16	1607968	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	50652	1607968	88746785	4084	29771										
RPL3L	0	genome.wustl.edu	37	chr16	1995840	1995840	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccagcactgccaacctttCtcagcgtaatgacccgcttc	6	17	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	1995840	1995840	C	A	SNP	RPL3L	ENST00000268661	human	ensembl	69_37n	-1	known	missense	c.1043	p.R348I	0.999	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	33	0	0	28	6	17.65	-	-	-	A	1995840	C	A	1995840	3	1	275	1	0	0	0	0	1	0	0	0	13680	913	32	2	192	2	RPL3L	16	1995840	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	387872	1995840	88358913	4085	29772										
TBC1D24	0	genome.wustl.edu	37	chr16	2546637	2546637	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgcatcctggcctgcaatgAccccggcaggaggctgatcg	13	15	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	2546637	2546637	A	G	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	1	known	missense	c.488	p.D163G	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	30	0	0	11	3	21.43	-	-	-	G	2546637	A	G	2546637	3	3	275	1	0	0	0	0	1	0	0	0	15706	275	10	5	490	5	TBC1D24	16	2546637	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	550797	2546637	87808116	4086	29773										
TBC1D24	0	genome.wustl.edu	37	chr16	2546965	2546965	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcaggacatccgcacgttCgtcagagacatcgcgaagac	11	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	2546965	2546965	C	T	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	1	known	silent	c.816	p.F272	0.470	superfamily_Rab-GTPase-TBC_dom	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	39	0	0	11	4	26.67	-	-	-	T	2546965	C	T	2546965	2	4	275	1	0	0	0	0	0	0	0	1	15706	883	31	1		1	TBC1D24	16	2546965	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	328	2546965	87807788	4087	29774										
SRRM2	0	genome.wustl.edu	37	chr16	2813009	2813009	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgccacctaaacagaaatCtaagacaccatcaagacaaa	4	13	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	2813009	2813009	C	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.2480	p.S827Y	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	276	0	0	130	50	27.78	-	-	-	A	2813009	C	A	2813009	3	1	275	1	0	0	0	0	1	0	0	0	15260	913	32	2	2518	2	SRRM2	16	2813009	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	266044	2813009	87541744	4088	29775										
ZNF263	0	genome.wustl.edu	37	chr16	3339699	3339699	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacctaattaggcaccagaGaatacatgcagctgaaagac	8	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	3339699	3339699	G	T	SNP	ZNF263	ENST00000219069	human	ensembl	69_37n	1	known	missense	c.1193	p.R398I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	88	0	0	43	7	14	-	-	-	T	3339699	G	T	3339699	3	4	275	1	0	0	0	0	1	0	0	0	17899	942	33	2	1215	2	ZNF263	16	3339699	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	526690	3339699	87015054	4089	29776										
ZNF75A	0	genome.wustl.edu	37	chr16	3367200	3367200	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attccaacagggttaaagctCaaaaacgacactgaaaatca	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	3367200	3367200	C	A	SNP	ZNF75A	ENST00000574298	human	ensembl	69_37n	1	known	silent	c.222	p.L74	0.366	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086	57	0	0	31	14	31.11	-	-	-	A	3367200	C	A	3367200	2	1	275	1	0	0	0	0	0	0	0	1	18227	813	29	2		2	ZNF75A	16	3367200	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	27501	3367200	86987553	4090	29777										
NLRC3	0	genome.wustl.edu	37	chr16	3602203	3602203	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatatgtctcacatgagctCtttcagactcctgttctgct	6	12	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	3602203	3602203	C	A	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	nonsense	c.2482	p.E828*	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	69	0	0	56	28	33.33	-	-	-	A	3602203	C	A	3602203	4	1	275	1	0	0	0	0	0	1	0	0	10540	913	32	2	897	2	NLRC3	16	3602203	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	235003	3602203	86752550	4091	29778										
CREBBP	0	genome.wustl.edu	37	chr16	3789684	3789684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcaaacagagctttggttCgatatgggaaagattcagac	11	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	3789684	3789684	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.4175	p.R1392Q	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	119	0	0	80	10	11.11	-	-	-	T	3789684	C	T	3789684	3	4	275	1	0	0	0	0	1	0	0	0	3891	884	31	1	3181	1	CREBBP	16	3789684	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	187481	3789684	86565069	4092	29779										
CREBBP	0	genome.wustl.edu	37	chr16	3807914	3807914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagactcgggatgtcttgcGattatagagccaggcattgt	12	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	3807914	3807914	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.3505	p.R1169C	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	251	0	0	108	26	19.4	-	-	-	A	3807914	G	A	3807914	3	1	275	1	0	0	0	0	1	0	0	0	3891	1058	37	1	3879	1	CREBBP	16	3807914	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18230	3807914	86546839	4093	29780										
ADCY9	0	genome.wustl.edu	37	chr16	4163814	4163814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactttcccatcttccatttCgtaccggtcatctaagtatt	4	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	4163814	4163814	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.1630	p.E544K	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	44	0	0	18	9	33.33	-	-	-	T	4163814	C	T	4163814	3	4	275	1	0	0	0	0	1	0	0	0	301	893	31	1	2471	1	ADCY9	16	4163814	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	355900	4163814	86190939	4094	29781										
USP7	0	genome.wustl.edu	37	chr16	9009376	9009376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcttattttccacattatCgagcaactgaaaaagaatgt	5	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	9009376	9009376	C	T	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	missense	c.913	p.D305N	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	466	0	0	254	41	13.9	-	-	-	T	9009376	C	T	9009376	3	4	275	1	0	0	0	0	1	0	0	0	17185	884	31	1	2487	1	USP7	16	9009376	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4845562	9009376	81345377	4095	29782										
GRIN2A	0	genome.wustl.edu	37	chr16	9943692	9943692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctatgtcttccacgatgaCgaatggggcctcctccaggg	12	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	9943692	9943692	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.1249	p.V417I	1.000	NULL	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	180	0	0	118	21	15	-	-	-	T	9943692	C	T	9943692	3	4	275	1	0	0	0	0	1	0	0	0	6830	536	19	1	3181	1	GRIN2A	16	9943692	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	934316	9943692	80411061	4096	29783										
TEKT5	0	genome.wustl.edu	37	chr16	10721434	10721434	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcggaatgaggcgccagggCggtgctcaggtgtggcccac	18	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	10721434	10721434	C	T	SNP	TEKT5	ENST00000574923	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TEKT5	HGNC	ENSG00000153060	40	0	0	36	9	20	-	-	-	T	10721434	C	T	10721434	1	4	275	0	1	0	0	0	0	0	0	0	15851	783	27	1		1	TEKT5	16	10721434	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	777742	10721434	79633319	4097	29784										
CLEC16A	0	genome.wustl.edu	37	chr16	11137913	11137913	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagaaagtgttcaccttgTacgacatttttataaggtaa	8	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	11137913	11137913	T	C	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.1799	p.V600A	0.593	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	144	0	0	82	18	18	-	-	-	C	11137913	T	C	11137913	3	2	275	1	0	0	0	0	1	0	0	0	3530	1638	57	5	1857	5	CLEC16A	16	11137913	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	416479	11137913	79216840	4098	29785										
ZC3H7A	0	genome.wustl.edu	37	chr16	11850204	11850204	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgactcttgagccatagttcGtaaaattgctccatatcttg	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	11850204	11850204	G	A	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	silent	c.2451	p.Y817	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	622	0	0	345	73	17.46	-	-	-	A	11850204	G	A	11850204	2	1	275	1	0	0	0	0	0	0	0	1	17668	1140	40	1		1	ZC3H7A	16	11850204	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	712291	11850204	78504549	4099	29786										
ZC3H7A	0	genome.wustl.edu	37	chr16	11873197	11873197	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccttcattaaaaagatttCtcacgagagcacgcaaatat	5	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	11873197	11873197	C	A	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.131	p.R44I	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	158	0	0	133	25	15.82	-	-	-	A	11873197	C	A	11873197	3	1	275	1	0	0	0	0	1	0	0	0	17668	913	32	2	2864	2	ZC3H7A	16	11873197	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22993	11873197	78481556	4100	29787										
RSL1D1	0	genome.wustl.edu	37	chr16	11931711	11931711	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgggaagcttttctcacaGatttactaggagtggtgaaa	12	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	11931711	11931711	G	T	SNP	RSL1D1	ENST00000571133	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469Y	0.874	NULL	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	-	no_errors	RSL1D1	HGNC	ENSG00000171490	288	0	0	202	34	14.41	-	-	-	T	11931711	G	T	11931711	3	4	275	1	0	0	0	0	1	0	0	0	13786	942	33	2	70	2	RSL1D1	16	11931711	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58514	11931711	78423042	4101	29788										
ERCC4	0	genome.wustl.edu	37	chr16	14029527	14029527	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagccaagatacgtggttCtttatgacgcagagctaacc	11	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	14029527	14029527	C	A	SNP	ERCC4	ENST00000311895	human	ensembl	69_37n	1	known	missense	c.1738	p.L580I	0.004	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595	83	0	0	49	7	12.5	-	-	-	A	14029527	C	A	14029527	3	1	275	1	0	0	0	0	1	0	0	0	5252	913	32	2	1768	2	ERCC4	16	14029527	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2097816	14029527	76325226	4102	29789										
ERCC4	0	genome.wustl.edu	37	chr16	14041854	14041854	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttccccagactacggattCtctggtgcccctctcctcat	6	17	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	14041854	14041854	C	A	SNP	ERCC4	ENST00000311895	human	ensembl	69_37n	1	known	missense	c.2401	p.L801I	1.000	superfamily_Restrct_endonuc-II-like,tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595	139	1	0.71	94	17	15.32	-	-	-	A	14041854	C	A	14041854	3	1	275	1	0	0	0	0	1	0	0	0	5252	913	32	2	2443	2	ERCC4	16	14041854	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12327	14041854	76312899	4103	29790										
C16orf45	0	genome.wustl.edu	37	chr16	15596229	15596229	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgggacggcggagtgcaaaGaaaggtatgatcgctcttgg	16	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15596229	15596229	G	T	SNP	C16orf45	ENST00000452191	human	ensembl	69_37n	1	known	missense	c.51	p.K17N	0.000	NULL	pfam_DUF3585	-	no_errors	C16orf45	HGNC	ENSG00000166780	480	0	0	265	49	15.46	-	-	-	T	15596229	G	T	15596229	3	4	275	1	0	0	0	0	1	0	0	0	1827	933	33	2	163	2	C16orf45	16	15596229	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1554375	15596229	74758524	4104	29791										
KIAA0430	0	genome.wustl.edu	37	chr16	15698114	15698114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggagtgttgtgggtactttCgtaatgtctcttgagctcct	13	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15698114	15698114	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.4324	p.E1442K	0.999	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	306	1	0.33	217	49	18.42	-	-	-	T	15698114	C	T	15698114	3	4	275	1	0	0	0	0	1	0	0	0	8229	893	31	1	928	1	KIAA0430	16	15698114	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101885	15698114	74656639	4105	29792										
KIAA0430	0	genome.wustl.edu	37	chr16	15698164	15698164	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgggtggttccttcccaaGacatcaacaataccagcaac	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15698164	15698164	G	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.4274	p.S1425Y	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	436	0	0	305	55	15.28	-	-	-	T	15698164	G	T	15698164	3	4	275	1	0	0	0	0	1	0	0	0	8229	942	33	2	978	2	KIAA0430	16	15698164	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	50	15698164	74656589	4106	29793										
NDE1	0	genome.wustl.edu	37	chr16	15771733	15771733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacctcgcgcagaccaaaGccattaaagaccaattgcag	8	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15771733	15771733	G	T	SNP	NDE1	ENST00000396353	human	ensembl	69_37n	1	known	missense	c.313	p.A105S	1.000	NULL	pfam_NUDE_C	-	no_errors	NDE1	HGNC	ENSG00000072864	225	0	0	202	36	15.06	-	-	-	T	15771733	G	T	15771733	3	4	275	1	0	0	0	0	1	0	0	0	10315	971	34	4	323	4	NDE1	16	15771733	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	73569	15771733	74583020	4107	29794										
NDE1	0	genome.wustl.edu	37	chr16	15781284	15781284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgcttgaatcaggccatcGaaagaaatgccttcctggaa	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15781284	15781284	G	A	SNP	NDE1	ENST00000396353	human	ensembl	69_37n	1	known	missense	c.439	p.E147K	1.000	pfam_NUDE_C	pfam_NUDE_C	-	no_errors	NDE1	HGNC	ENSG00000072864	124	0	0	80	17	17.53	-	-	-	A	15781284	G	A	15781284	3	1	275	1	0	0	0	0	1	0	0	0	10315	1059	37	1	453	1	NDE1	16	15781284	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9551	15781284	74573469	4108	29795										
MYH11	0	genome.wustl.edu	37	chr16	15833938	15833938	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattgttctgatcatccatGaccaggatctcatcctccag	6	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	15833938	15833938	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.2988	p.V996	0.999	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	229	0	0	154	33	17.65	-	-	-	T	15833938	G	T	15833938	2	4	275	1	0	0	0	0	0	0	0	1	10103	1277	45	2		2	MYH11	16	15833938	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	52654	15833938	74520815	4109	29796										
ABCC1	0	genome.wustl.edu	37	chr16	16150143	16150143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accttcacctgggtctgcacGccctttctggtgagtgaagc	11	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	16150143	16150143	G	A	SNP	ABCC1	ENST00000572882	human	ensembl	69_37n	1	novel	missense	c.1363	p.A455T	0.007	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCC1	HGNC	ENSG00000103222	185	0	0	115	53	30.64	-	-	-	A	16150143	G	A	16150143	3	1	275	1	0	0	0	0	1	0	0	0	49	1074	38	1	1714	1	ABCC1	16	16150143	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	316205	16150143	74204610	4110	29797										
ABCC1	0	genome.wustl.edu	37	chr16	16235086	16235086	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcgccccatcggacctccTgcagcagagaggtcttttct	11	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	16235086	16235086	T	A	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.4574	p.L1525Q	1.000	pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	125	0	0	97	13	11.61	-	-	-	A	16235086	T	A	16235086	3	1	275	1	0	0	0	0	1	0	0	0	49	1580	55	5	4666	5	ABCC1	16	16235086	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	84943	16235086	74119667	4111	29798										
SMG1	0	genome.wustl.edu	37	chr16	18847333	18847333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcttccactgttcaattCgatgtttctgaaatatggcc	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	18847333	18847333	C	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.7979	p.R2660Q	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	163	0	0	107	21	16.41	-	-	-	T	18847333	C	T	18847333	3	4	275	1	0	0	0	0	1	0	0	0	14884	884	31	1	3070	1	SMG1	16	18847333	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2612247	18847333	71507420	4112	29799										
SMG1	0	genome.wustl.edu	37	chr16	18865059	18865059	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttcagctgtcctgaaatCtctttccattctgcctggat	7	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	18865059	18865059	C	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.4614	p.E1538D	0.997	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	507	1	0.2	273	55	16.77	-	-	-	A	18865059	C	A	18865059	3	1	275	1	0	0	0	0	1	0	0	0	14884	912	32	2	6503	2	SMG1	16	18865059	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17726	18865059	71489694	4113	29800										
TMC7	0	genome.wustl.edu	37	chr16	19020544	19020544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctccacctgtgaacttcCtccaagaattgccaagctac	5	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	19020544	19020544	C	T	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.118	p.L40F	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	139	0	0	97	19	16.38	-	-	-	T	19020544	C	T	19020544	3	4	275	1	0	0	0	0	1	0	0	0	16085	681	24	4	124	4	TMC7	16	19020544	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155485	19020544	71334209	4114	29801										
TMC7	0	genome.wustl.edu	37	chr16	19020698	19020698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcagcagccattctcttcGaaattatgcactgaacatct	5	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	19020698	19020698	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.272	p.R91Q	0.757	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	91	0	0	50	18	26.09	-	-	-	A	19020698	G	A	19020698	3	1	275	1	0	0	0	0	1	0	0	0	16085	1058	37	1	278	1	TMC7	16	19020698	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154	19020698	71334055	4115	29802										
TMC7	0	genome.wustl.edu	37	chr16	19051653	19051653	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagaacctcttcatattgTatctaccgtctattgtgatc	7	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	19051653	19051653	T	C	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.1222	p.Y408H	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	581	0	0	413	63	13.18	-	-	-	C	19051653	T	C	19051653	3	2	275	1	0	0	0	0	1	0	0	0	16085	1638	57	5	1256	5	TMC7	16	19051653	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	30955	19051653	71303100	4116	29803										
TMC7	0	genome.wustl.edu	37	chr16	19056743	19056743	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttggctgtgacactcttCgtggattttcctagaaagta	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	19056743	19056743	C	T	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	silent	c.1536	p.F512	0.995	pfam_TMC	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	103	0	0	73	11	13.1	-	-	-	T	19056743	C	T	19056743	2	4	275	1	0	0	0	0	0	0	0	1	16085	883	31	1		1	TMC7	16	19056743	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5090	19056743	71298010	4117	29804										
GPR139	0	genome.wustl.edu	37	chr16	20043381	20043381	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagaggtggtaaagaatcatGatgatgcggggggcccaaag	16	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20043381	20043381	G	T	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	silent	c.738	p.I246	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	148	0	0	98	21	17.65	-	-	-	T	20043381	G	T	20043381	2	4	275	1	0	0	0	0	0	0	0	1	6698	1280	45	2		2	GPR139	16	20043381	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	986638	20043381	70311372	4118	29805										
GPR139	0	genome.wustl.edu	37	chr16	20043735	20043735	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgagcgggtggcagacagcGatatacctgtcaatggttaa	13	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20043735	20043735	G	T	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	silent	c.384	p.I128	0.932	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	201	1	0.5	154	22	12.5	-	-	-	T	20043735	G	T	20043735	2	4	275	1	0	0	0	0	0	0	0	1	6698	1048	37	3		3	GPR139	16	20043735	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	354	20043735	70311018	4119	29806										
GP2	0	genome.wustl.edu	37	chr16	20331042	20331042	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgtctctgatgatgaaatCattgaccaaggagagggtgt	14	5	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20331042	20331042	C	A	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	missense	c.916	p.D306Y	0.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	1010	0	0	451	199	30.62	-	-	-	A	20331042	C	A	20331042	3	1	275	1	0	0	0	0	1	0	0	0	6632	826	29	2	721	2	GP2	16	20331042	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	287307	20331042	70023711	4120	29807										
ACSM2A	0	genome.wustl.edu	37	chr16	20486988	20486988	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagttacaagttcccccatCtacagaactgcgtcactgta	6	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20486988	20486988	C	A	SNP	ACSM2A	ENST00000219054	human	ensembl	69_37n	1	known	missense	c.991	p.L331I	0.931	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747	281	0	0	175	33	15.87	-	-	-	A	20486988	C	A	20486988	3	1	275	1	0	0	0	0	1	0	0	0	183	912	32	2	1017	2	ACSM2A	16	20486988	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155946	20486988	69867765	4121	29808										
ACSM3	0	genome.wustl.edu	37	chr16	20788847	20788847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaaatctgcactccaagCtgattgtatcagagaactcc	8	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20788847	20788847	C	T	SNP	ACSM3	ENST00000562251	human	ensembl	69_37n	1	novel	missense	c.458	p.A153V	0.867	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACSM3	HGNC	ENSG00000005187	112	0	0	59	12	16.9	-	-	-	T	20788847	C	T	20788847	3	4	275	1	0	0	0	0	1	0	0	0	185	796	28	4	593	4	ACSM3	16	20788847	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	301859	20788847	69565906	4122	29809										
ACSM3	0	genome.wustl.edu	37	chr16	20803563	20803563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catatgtgtttctagctatcGaattggaccatttgaggtag	10	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20803563	20803563	G	A	SNP	ACSM3	ENST00000289416	human	ensembl	69_37n	1	known	missense	c.1460	p.R487Q	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187	213	0	0	98	14	12.5	-	-	-	A	20803563	G	A	20803563	3	1	275	1	0	0	0	0	1	0	0	0	185	1058	37	1	1595	1	ACSM3	16	20803563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14716	20803563	69551190	4123	29810										
DCUN1D3	0	genome.wustl.edu	37	chr16	20873485	20873485	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaagccaagagcagcactcGaaattctgtggggtcaacac	10	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20873485	20873485	G	A	SNP	DCUN1D3	ENST00000324344	human	ensembl	69_37n	-1	known	nonsense	c.376	p.R126*	1.000	NULL	pfam_PONY_dom	-	no_errors	DCUN1D3	HGNC	ENSG00000188215	145	0	0	97	19	16.24	-	-	-	A	20873485	G	A	20873485	4	1	275	1	0	0	0	0	0	1	0	0	4346	1066	37	1	546	1	DCUN1D3	16	20873485	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69922	20873485	69481268	4124	29811										
DNAH3	0	genome.wustl.edu	37	chr16	20996486	20996486	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtctgcatcttctccacGatgtcagccttctcgtcagc	8	15	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	20996486	20996486	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.7578	p.I2526	0.981	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	59	0	0	28	24	46.15	-	-	-	A	20996486	G	A	20996486	2	1	275	1	0	0	0	0	0	0	0	1	4639	1048	37	1		1	DNAH3	16	20996486	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	123001	20996486	69358267	4125	29812										
ZP2	0	genome.wustl.edu	37	chr16	21213571	21213571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttggtagctgtagacctCgacgtccataaacccatcct	8	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	21213571	21213571	C	T	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	missense	c.1141	p.E381K	0.911	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	202	0	0	118	19	13.87	-	-	-	T	21213571	C	T	21213571	3	4	275	1	0	0	0	0	1	0	0	0	18309	893	31	1	1132	1	ZP2	16	21213571	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	217085	21213571	69141182	4126	29813										
OTOA	0	genome.wustl.edu	37	chr16	21702948	21702948	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgacaaaacctcggctcatTcccagagagctctctattcc	6	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	21702948	21702948	T	G	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.679	p.S227A	0.000	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	153	0	0	109	21	16.15	-	-	-	G	21702948	T	G	21702948	3	3	275	1	0	0	0	0	1	0	0	0	11375	1783	62	5	743	5	OTOA	16	21702948	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	489377	21702948	68651805	4127	29814										
OTOA	0	genome.wustl.edu	37	chr16	21728238	21728238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctggcagatggtccaagCggaagacactgccccaggca	12	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	21728238	21728238	C	T	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.1541	p.A514V	0.001	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	135	1	0.74	98	22	18.18	-	-	-	T	21728238	C	T	21728238	3	4	275	1	0	0	0	0	1	0	0	0	11375	768	27	1	1599	1	OTOA	16	21728238	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25290	21728238	68626515	4128	29815										
VWA3A	0	genome.wustl.edu	37	chr16	22162149	22162149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgaaagtgcacaccatttCcttgaactgctcagacaggt	9	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	22162149	22162149	C	A	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.3263	p.S1088Y	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	156	0	0	145	27	15.7	-	-	-	A	22162149	C	A	22162149	3	1	275	1	0	0	0	0	1	0	0	0	17337	855	30	2	3381	2	VWA3A	16	22162149	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	433911	22162149	68192604	4129	29816										
EEF2K	0	genome.wustl.edu	37	chr16	22291526	22291526	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcctggcaaggtgccaaGactggctagaggccctgcac	12	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	22291526	22291526	G	T	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	missense	c.1897	p.D633Y	0.811	pfam_Sel1-like,pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	310	0	0	256	50	16.34	-	-	-	T	22291526	G	T	22291526	3	4	275	1	0	0	0	0	1	0	0	0	4965	942	33	2	1959	2	EEF2K	16	22291526	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	129377	22291526	68063227	4130	29817										
USP31	0	genome.wustl.edu	37	chr16	23080922	23080922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacacttctcacaaatggtCgagttgaaaagcctcctgaa	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	23080922	23080922	C	T	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.2504	p.R835Q	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	67	0	0	24	6	20	-	-	-	T	23080922	C	T	23080922	3	4	275	1	0	0	0	0	1	0	0	0	17159	884	31	1	1558	1	USP31	16	23080922	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	789396	23080922	67273831	4131	29818										
CHP2	0	genome.wustl.edu	37	chr16	23768569	23768569	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgacagaagagcagctggaGaacatcgctgaccgcacggt	14	10	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	23768569	23768569	G	T	SNP	CHP2	ENST00000300113	human	ensembl	69_37n	1	known	missense	c.462	p.E154D	0.954	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CHP2	HGNC	ENSG00000166869	309	0	0	199	35	14.96	-	-	-	T	23768569	G	T	23768569	3	4	275	1	0	0	0	0	1	0	0	0	3396	933	33	2	484	2	CHP2	16	23768569	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	687647	23768569	66586184	4132	29819										
CACNG3	0	genome.wustl.edu	37	chr16	24366264	24366264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagcagacacaacgtcattCtcagcgcgggcatctttttt	9	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	24366264	24366264	C	T	SNP	CACNG3	ENST00000005284	human	ensembl	69_37n	1	known	missense	c.406	p.L136F	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	215	0	0	91	44	32.59	-	-	-	T	24366264	C	T	24366264	3	4	275	1	0	0	0	0	1	0	0	0	2583	913	32	2	416	2	CACNG3	16	24366264	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	597695	24366264	65988489	4133	29820										
TNRC6A	0	genome.wustl.edu	37	chr16	24802773	24802773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctctaggttggggagattCgtcaaagccagtcagctctc	12	10	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	24802773	24802773	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.2810	p.S937L	0.994	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	75	0	0	45	21	31.82	-	-	-	T	24802773	C	T	24802773	3	4	275	1	0	0	0	0	1	0	0	0	16435	893	31	1	2832	1	TNRC6A	16	24802773	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	436509	24802773	65551980	4134	29821										
GTF3C1	0	genome.wustl.edu	37	chr16	27494391	27494391	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcatcatagtcacctcttcGattcatgaaatctccaacaa	4	12	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	27494391	27494391	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	nonsense	c.4057	p.R1353*	0.081	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	110	0	0	130	15	10.34	-	-	-	A	27494391	G	A	27494391	4	1	275	1	0	0	0	0	0	1	0	0	6923	1066	37	1	2320	1	GTF3C1	16	27494391	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2691618	27494391	62860362	4135	29822										
KIAA0556	0	genome.wustl.edu	37	chr16	27692752	27692752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggaatttgtctgcaaagCggaaggacaatgctgaggtt	13	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	27692752	27692752	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.841	p.R281W	0.998	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	149	0	0	103	22	17.46	-	-	-	T	27692752	C	T	27692752	3	4	275	1	0	0	0	0	1	0	0	0	8235	759	27	1	871	1	KIAA0556	16	27692752	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	198361	27692752	62662001	4136	29823										
TUFM	0	genome.wustl.edu	37	chr16	28855414	28855414	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaggctcttgtggaacaTctcaatgcctaggacggaaa	10	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	28855414	28855414	T	G	SNP	TUFM	ENST00000313511	human	ensembl	69_37n	-1	known	missense	c.931	p.M311L	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952	78	0	0	39	11	22	-	-	-	G	28855414	T	G	28855414	3	3	275	1	0	0	0	0	1	0	0	0	16868	1435	50	5	448	5	TUFM	16	28855414	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1162662	28855414	61499339	4137	29824										
ATP2A1	0	genome.wustl.edu	37	chr16	28895923	28895923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaagtccctgcagacatccGaatcctcgccatcaaatcca	5	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	28895923	28895923	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.491	p.R164Q	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	34	0	0	20	9	30	-	-	-	A	28895923	G	A	28895923	3	1	275	1	0	0	0	0	1	0	0	0	1140	1058	37	1	513	1	ATP2A1	16	28895923	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40509	28895923	61458830	4138	29825										
CD19	0	genome.wustl.edu	37	chr16	28948829	28948829	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgggtcctgaggatgaaGactccttctccaacggtaac	10	13	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	28948829	28948829	G	A	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	missense	c.1357	p.D453N	0.987	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	241	0	0	145	22	13.17	-	-	-	A	28948829	G	A	28948829	3	1	275	1	0	0	0	0	1	0	0	0	3002	942	33	2	1395	2	CD19	16	28948829	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	52906	28948829	61405924	4139	29826										
SPNS1	0	genome.wustl.edu	37	chr16	28993331	28993331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcccgcgtggtccttgggGagaccccaccctgccttccc	11	18	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	28993331	28993331	G	A	SNP	SPNS1	ENST00000311008	human	ensembl	69_37n	1	known	missense	c.919	p.E307K	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682	137	0	0	82	14	14.58	-	-	-	A	28993331	G	A	28993331	3	1	275	1	0	0	0	0	1	0	0	0	15165	1175	41	2	945	2	SPNS1	16	28993331	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44502	28993331	61361422	4140	29827										
KIF22	0	genome.wustl.edu	37	chr16	29810435	29810435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacttcctgccagccagtcGaaatcggactgtaggagcca	11	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	29810435	29810435	G	A	SNP	KIF22	ENST00000160827	human	ensembl	69_37n	1	known	missense	c.689	p.R230Q	0.903	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	36	0	0	31	9	22.5	-	-	-	A	29810435	G	A	29810435	3	1	275	1	0	0	0	0	1	0	0	0	8342	1058	37	1	707	1	KIF22	16	29810435	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	817104	29810435	60544318	4141	29828										
MVP	0	genome.wustl.edu	37	chr16	29845167	29845167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaggagatgagtggcttttCgagggacctggtaagttctg	16	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	29845167	29845167	C	T	SNP	MVP	ENST00000563123	human	ensembl	69_37n	1	known	missense	c.20	p.S7L	1.000	pfam_Vault_N	pfam_Vault_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MVP	HGNC	ENSG00000013364	251	0	0	140	68	32.69	-	-	-	T	29845167	C	T	29845167	3	4	275	1	0	0	0	0	1	0	0	0	10068	883	31	1	445	1	MVP	16	29845167	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34732	29845167	60509586	4142	29829										
ITGAL	0	genome.wustl.edu	37	chr16	30518050	30518050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacagatccagagccctgcGtctaactgcttttgccagcc	8	16	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	30518050	30518050	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	missense	c.2381	p.R794H	0.494	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	103	0	0	71	34	32.38	-	-	-	A	30518050	G	A	30518050	3	1	275	1	0	0	0	0	1	0	0	0	7940	1145	40	1	2463	1	ITGAL	16	30518050	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	672883	30518050	59836703	4143	29830										
ITGAX	0	genome.wustl.edu	37	chr16	31390960	31390960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagccatgtggccatgcacaGataccaggcaggtggtggag	15	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	31390960	31390960	G	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.2861	p.R954I	0.038	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	81	0	0	44	25	35.71	-	-	-	T	31390960	G	T	31390960	3	4	275	1	0	0	0	0	1	0	0	0	7943	942	33	2	2955	2	ITGAX	16	31390960	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	872910	31390960	58963793	4144	29831										
ZNF267	0	genome.wustl.edu	37	chr16	31926853	31926853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataccttactaaacataagcGaattcatactggagagaaac	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	31926853	31926853	G	A	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	missense	c.1283	p.R428Q	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	95	0	0	54	17	23.61	-	-	-	A	31926853	G	A	31926853	3	1	275	1	0	0	0	0	1	0	0	0	17902	1058	37	1	1297	1	ZNF267	16	31926853	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	535893	31926853	58427900	4145	29832										
ABCC12	0	genome.wustl.edu	37	chr16	48139206	48139206	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtctgccagcaccgcgccGacctcacacatggtcctgtt	9	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	48139206	48139206	G	A	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	silent	c.2517	p.V839	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	124	0	0	56	16	22.22	-	-	-	A	48139206	G	A	48139206	2	1	275	1	0	0	0	0	0	0	0	1	52	1045	37	1		1	ABCC12	16	48139206	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16212353	48139206	42215547	4146	29833										
SIAH1	0	genome.wustl.edu	37	chr16	48395618	48395618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattccttcatgaatagatCgaggagtcgcttcccaagtc	8	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	48395618	48395618	C	T	SNP	SIAH1	ENST00000356721	human	ensembl	69_37n	-1	known	missense	c.815	p.R272Q	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH1	HGNC	ENSG00000196470	128	0	0	37	22	37.29	-	-	-	T	48395618	C	T	48395618	3	4	275	1	0	0	0	0	1	0	0	0	14388	884	31	1	130	1	SIAH1	16	48395618	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256412	48395618	41959135	4147	29834										
ZNF423	0	genome.wustl.edu	37	chr16	49671463	49671463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggcctgctggatgtgctCggtgagggaggactcagtaa	18	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	49671463	49671463	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.1600	p.E534K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	108	0	0	47	28	37.33	-	-	-	T	49671463	C	T	49671463	3	4	275	1	0	0	0	0	1	0	0	0	17994	893	31	1	2274	1	ZNF423	16	49671463	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1275845	49671463	40683290	4148	29835										
CYLD	0	genome.wustl.edu	37	chr16	50828137	50828137	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaggtccaccttcatccGaagaggctgaatcataaata	7	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	50828137	50828137	G	A	SNP	CYLD	ENST00000311559	human	ensembl	69_37n	1	known	silent	c.2484	p.P828	0.994	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_CAP-Gly_domain,pfam_Peptidase_C19,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19	-	no_errors	CYLD	HGNC	ENSG00000083799	80	0	0	53	36	40.45	-	-	-	A	50828137	G	A	50828137	2	1	275	1	0	0	0	0	0	0	0	1	4174	1045	37	1		1	CYLD	16	50828137	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1156674	50828137	39526616	4149	29836										
TOX3	0	genome.wustl.edu	37	chr16	52498061	52498061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcgtgattggtggaatttCgaattcctcgtccccaaggc	12	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	52498061	52498061	C	T	SNP	TOX3	ENST00000219746	human	ensembl	69_37n	-1	known	missense	c.193	p.E65K	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX3	HGNC	ENSG00000103460	353	0	0	120	39	24.38	-	-	-	T	52498061	C	T	52498061	3	4	275	1	0	0	0	0	1	0	0	0	16475	893	31	1	1557	1	TOX3	16	52498061	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1669924	52498061	37856692	4150	29837										
CHD9	0	genome.wustl.edu	37	chr16	53190576	53190576	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcaacccagggcagaattCtcttagccagtctaaaaatt	6	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	53190576	53190576	C	A	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.575	p.S192Y	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	145	0	0	99	30	23.26	-	-	-	A	53190576	C	A	53190576	3	1	275	1	0	0	0	0	1	0	0	0	3361	913	32	2	577	2	CHD9	16	53190576	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	692515	53190576	37164177	4151	29838										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53653105	53653105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagagctatgatctcaatccGaattttttctgatggctgtt	8	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	53653105	53653105	G	A	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	missense	c.3448	p.R1150W	0.998	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	141	1	0.7	50	28	35.9	-	-	-	A	53653105	G	A	53653105	3	1	275	1	0	0	0	0	1	0	0	0	13636	1057	37	1	515	1	RPGRIP1L	16	53653105	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	462529	53653105	36701648	4152	29839										
CES1	0	genome.wustl.edu	37	chr16	55844541	55844541	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgttcctcctaagtatttCtcagtggcttctggaatcag	8	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	55844541	55844541	C	A	SNP	CES1	ENST00000360526	human	ensembl	69_37n	-1	known	missense	c.1206	p.E402D	0.255	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848	165	1	0.6	94	51	35.17	-	-	-	A	55844541	C	A	55844541	3	1	275	1	0	0	0	0	1	0	0	0	3298	912	32	2	516	2	CES1	16	55844541	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2191436	55844541	34510212	4153	29840										
SLC12A3	0	genome.wustl.edu	37	chr16	56936405	56936405	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctcagatgaggagattacGaagaacagagtcaaggtgca	12	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	56936405	56936405	G	A	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	silent	c.2868	p.T956	0.019	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	72	0	0	29	12	29.27	-	-	-	A	56936405	G	A	56936405	2	1	275	1	0	0	0	0	0	0	0	1	14473	1045	37	1		1	SLC12A3	16	56936405	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1091864	56936405	33418348	4154	29841										
RSPRY1	0	genome.wustl.edu	37	chr16	57246892	57246892	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttgttttaggatgcactCcagaaattgactgaaattct	7	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	57246892	57246892	C	T	SNP	RSPRY1	ENST00000394420	human	ensembl	69_37n	1	known	silent	c.525	p.L175	1.000	superfamily_ARM-type_fold	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RSPRY1	HGNC	ENSG00000159579	88	0	0	21	20	48.78	-	-	-	T	57246892	C	T	57246892	2	4	275	1	0	0	0	0	0	0	0	1	13799	842	30	2		2	RSPRY1	16	57246892	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	310487	57246892	33107861	4155	29842										
CIAPIN1	0	genome.wustl.edu	37	chr16	57473235	57473235	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataatgtcaaagctggattCtttgtgggcagctgaaaaga	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	57473235	57473235	C	A	SNP	CIAPIN1	ENST00000394391	human	ensembl	69_37n	-1	known	nonsense	c.169	p.E57*	1.000	NULL	pfam_CIAPIN1	-	no_errors	CIAPIN1	HGNC	ENSG00000005194	103	0	0	90	14	13.46	-	-	-	A	57473235	C	A	57473235	4	1	275	1	0	0	0	0	0	1	0	0	3448	922	32	2	797	2	CIAPIN1	16	57473235	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	226343	57473235	32881518	4156	29843										
CCDC102A	0	genome.wustl.edu	37	chr16	57546778	57546778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgttctgctgctgcctgcGgagcctgtggggtgggggtg	20	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	57546778	57546778	G	A	SNP	CCDC102A	ENST00000258214	human	ensembl	69_37n	-1	known	missense	c.1528	p.R510C	1.000	NULL	NULL	-	no_errors	CCDC102A	HGNC	ENSG00000135736	162	0	0	46	10	17.86	-	-	-	A	57546778	G	A	57546778	3	1	275	1	0	0	0	0	1	0	0	0	2761	1116	39	1	128	1	CCDC102A	16	57546778	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	73543	57546778	32807975	4157	29844										
KIFC3	0	genome.wustl.edu	37	chr16	57794238	57794238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacccaagctctgccctgcGtagcccaggccccagctcca	10	19	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	57794238	57794238	G	A	SNP	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	missense	c.2323	p.R775C	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	56	0	0	15	7	31.82	-	-	-	A	57794238	G	A	57794238	3	1	275	1	0	0	0	0	1	0	0	0	8366	1145	40	1	199	1	KIFC3	16	57794238	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	247460	57794238	32560515	4158	29845										
CNGB1	0	genome.wustl.edu	37	chr16	57974198	57974198	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctggcccacgcccacctgCgacaccacacagctatccag	7	20	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	57974198	57974198	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.1149	p.S383	0.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	176	0	0	69	19	21.59	-	-	-	T	57974198	C	T	57974198	2	4	275	1	0	0	0	0	0	0	0	1	3630	755	27	1		1	CNGB1	16	57974198	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	179960	57974198	32380555	4159	29846										
PRSS54	0	genome.wustl.edu	37	chr16	58314181	58314181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaaccaagatgatttcttCgggctgatacaacctgttct	9	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	58314181	58314181	C	T	SNP	PRSS54	ENST00000219301	human	ensembl	69_37n	-1	known	missense	c.1135	p.E379K	0.775	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	-	no_errors	PRSS54	HGNC	ENSG00000103023	251	0	0	150	29	16.2	-	-	-	T	58314181	C	T	58314181	3	4	275	1	0	0	0	0	1	0	0	0	12713	893	31	1	56	1	PRSS54	16	58314181	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	339983	58314181	32040572	4160	29847										
GINS3	0	genome.wustl.edu	37	chr16	58438421	58438421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacttttatcggacgttttCgccgcatcatggactcctca	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	58438421	58438421	C	T	SNP	GINS3	ENST00000426538	human	ensembl	69_37n	1	known	missense	c.556	p.R186C	1.000	pfam_GINS_complex	pfam_GINS_complex	-	no_errors	GINS3	HGNC	ENSG00000181938	298	0	0	135	100	42.37	-	-	-	T	58438421	C	T	58438421	3	4	275	1	0	0	0	0	1	0	0	0	6441	884	31	1	570	1	GINS3	16	58438421	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	124240	58438421	31916332	4161	29848										
CNOT1	0	genome.wustl.edu	37	chr16	58577650	58577650	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcgcattcgagattcctccGaatccagggcaaaatccttc	7	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	58577650	58577650	G	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	nonsense	c.4295	p.S1432*	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	131	0	0	61	19	23.75	-	-	-	T	58577650	G	T	58577650	4	4	275	1	0	0	0	0	0	1	0	0	3647	1059	37	3	3133	3	CNOT1	16	58577650	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	139229	58577650	31777103	4162	29849										
CDH8	0	genome.wustl.edu	37	chr16	61689592	61689592	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgcttctggcggttgaatCcattatgctttgccaaaata	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	61689592	61689592	C	A	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1688	p.G563V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	303	0	0	127	94	42.34	-	-	-	A	61689592	C	A	61689592	3	1	275	1	0	0	0	0	1	0	0	0	3145	855	30	2	719	2	CDH8	16	61689592	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3111942	61689592	28665161	4163	29850										
CDH11	0	genome.wustl.edu	37	chr16	64981769	64981769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccacgctgttgggcgctgGccggagcccaggtctaggca	15	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	64981769	64981769	G	A	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.2128	p.P710S	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	342	1	0.29	109	68	38.42	-	-	-	A	64981769	G	A	64981769	3	1	275	1	0	0	0	0	1	0	0	0	3126	1203	42	4	266	4	CDH11	16	64981769	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3292177	64981769	25372984	4164	29851										
CDH16	0	genome.wustl.edu	37	chr16	66946460	66946460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatatctgtgactgcgacttCgacttcacacgtgctgctga	10	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	66946460	66946460	C	T	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	missense	c.1306	p.E436K	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	136	0	0	63	9	12.5	-	-	-	T	66946460	C	T	66946460	3	4	275	1	0	0	0	0	1	0	0	0	3130	893	31	1	1215	1	CDH16	16	66946460	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1964691	66946460	23408293	4165	29852										
C16orf70	0	genome.wustl.edu	37	chr16	67174455	67174455	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcataaacaagttccatcGaagtgtaatgactacttttt	5	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	67174455	67174455	G	A	SNP	C16orf70	ENST00000219139	human	ensembl	69_37n	1	known	silent	c.837	p.S279	0.615	pfam_UPF0183	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149	116	0	0	38	15	28.3	-	-	-	A	67174455	G	A	67174455	2	1	275	1	0	0	0	0	0	0	0	1	1842	1045	37	1		1	C16orf70	16	67174455	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	227995	67174455	23180298	4166	29853										
NFATC3	0	genome.wustl.edu	37	chr16	68200796	68200796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattcagatatagaacttcGaaaaggagaaactgatattg	8	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	68200796	68200796	G	A	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.1652	p.R551Q	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	215	0	0	96	16	14.16	-	-	-	A	68200796	G	A	68200796	3	1	275	1	0	0	0	0	1	0	0	0	10436	1058	37	1	1670	1	NFATC3	16	68200796	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1026341	68200796	22153957	4167	29854										
PRMT7	0	genome.wustl.edu	37	chr16	68349759	68349759	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatagattttttttctgttCgtttgtttatatacctcctg	5	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	68349759	68349759	C	T	SNP	PRMT7	ENST00000563562	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	PRMT7	HGNC	ENSG00000132600	24	0	0	19	7	26.92	-	-	-	T	68349759	C	T	68349759	1	4	275	0	1	0	0	0	0	0	0	0	12622	899	31	1		1	PRMT7	16	68349759	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148963	68349759	22004994	4168	29855										
CIRH1A	0	genome.wustl.edu	37	chr16	69197071	69197071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaccttgtcatcgctcattCggaccagcaggtaagggaga	11	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	69197071	69197071	C	T	SNP	CIRH1A	ENST00000314423	human	ensembl	69_37n	1	known	missense	c.1637	p.S546L	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	182	1	0.55	89	15	14.29	-	-	-	T	69197071	C	T	69197071	3	4	275	1	0	0	0	0	1	0	0	0	3463	893	31	1	1687	1	CIRH1A	16	69197071	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	847312	69197071	21157682	4169	29856										
HYDIN	0	genome.wustl.edu	37	chr16	71101232	71101232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcacctcttctccgatgCcctccacgtccaccacgagt	6	20	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	71101232	71101232	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.2036	p.G679D	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	191	0	0	76	27	25.96	-	-	-	T	71101232	C	T	71101232	3	4	275	1	0	0	0	0	1	0	0	0	7521	739	26	4	13626	4	HYDIN	16	71101232	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1904161	71101232	19253521	4170	29857										
ZNF23	0	genome.wustl.edu	37	chr16	71483103	71483103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgatagggcttctctccCgtatggattctctgatgcct	9	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	71483103	71483103	C	T	SNP	ZNF23	ENST00000357254	human	ensembl	69_37n	-1	known	silent	c.825	p.T275	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377	128	0	0	61	22	26.51	-	-	-	T	71483103	C	T	71483103	2	4	275	1	0	0	0	0	0	0	0	1	17879	639	23	1		1	ZNF23	16	71483103	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	381871	71483103	18871650	4171	29858										
ZNF23	0	genome.wustl.edu	37	chr16	71483736	71483736	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagttcaaatgatacattCtcttttccttcatacatttc	3	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	71483736	71483736	C	A	SNP	ZNF23	ENST00000357254	human	ensembl	69_37n	-1	known	missense	c.192	p.E64D	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377	172	0	0	64	11	14.67	-	-	-	A	71483736	C	A	71483736	3	1	275	1	0	0	0	0	1	0	0	0	17879	912	32	2	1743	2	ZNF23	16	71483736	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	633	71483736	18871017	4172	29859										
GLG1	0	genome.wustl.edu	37	chr16	74487163	74487163	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcccactgatcacagagaGaatgtagttcttagatggag	11	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	74487163	74487163	G	T	SNP	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	missense	c.3442	p.L1148I	1.000	NULL	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	189	0	0	66	49	42.61	-	-	-	T	74487163	G	T	74487163	3	4	275	1	0	0	0	0	1	0	0	0	6488	942	33	2	181	2	GLG1	16	74487163	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3003427	74487163	15867590	4173	29860										
MON1B	0	genome.wustl.edu	37	chr16	77232019	77232019	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccaggtgacctccaaattCgagctctatacctgcctcag	7	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	77232019	77232019	C	T	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	silent	c.1458	p.F486	0.955	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	237	0	0	60	32	34.78	-	-	-	T	77232019	C	T	77232019	2	4	275	1	0	0	0	0	0	0	0	1	9771	883	31	1		1	MON1B	16	77232019	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2744856	77232019	13122734	4174	29861										
NUDT7	0	genome.wustl.edu	37	chr16	77775776	77775776	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttgaggttcaatttaatCttaatgatgtattagcatcc	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	77775776	77775776	C	A	SNP	NUDT7	ENST00000268533	human	ensembl	69_37n	1	known	missense	c.646	p.L216I	0.869	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876	126	0	0	43	23	34.85	-	-	-	A	77775776	C	A	77775776	3	1	275	1	0	0	0	0	1	0	0	0	10817	913	32	2	660	2	NUDT7	16	77775776	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	543757	77775776	12578977	4175	29862										
CDYL2	0	genome.wustl.edu	37	chr16	80646631	80646631	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccttctcactggcccacacGatgtcacagaggggcaggat	12	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	80646631	80646631	G	A	SNP	CDYL2	ENST00000299564	human	ensembl	69_37n	-1	known	silent	c.1110	p.I370	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	218	0	0	58	44	43.14	-	-	-	A	80646631	G	A	80646631	2	1	275	1	0	0	0	0	0	0	0	1	3215	1048	37	1		1	CDYL2	16	80646631	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2870855	80646631	9708122	4176	29863										
GAN	0	genome.wustl.edu	37	chr16	81391485	81391485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctaacaggcagctttggatcGaactggcccctttaagcatg	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	81391485	81391485	G	A	SNP	GAN	ENST00000248272	human	ensembl	69_37n	1	known	missense	c.922	p.E308K	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000127688	323	0	0	101	60	37.27	-	-	-	A	81391485	G	A	81391485	3	1	275	1	0	0	0	0	1	0	0	0	6282	1059	37	1	940	1	GAN	16	81391485	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	744854	81391485	8963268	4177	29864										
MPHOSPH6	0	genome.wustl.edu	37	chr16	82182999	82182999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcttagcattcatctgaaGcatcaatttctgaaaaatac	6	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	82182999	82182999	G	A	SNP	MPHOSPH6	ENST00000258169	human	ensembl	69_37n	-1	known	missense	c.265	p.L89F	1.000	pfam_MPP6	pfam_MPP6	-	no_errors	MPHOSPH6	HGNC	ENSG00000135698	225	0	0	95	35	26.92	-	-	-	A	82182999	G	A	82182999	3	1	275	1	0	0	0	0	1	0	0	0	9798	971	34	4	225	4	MPHOSPH6	16	82182999	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	791514	82182999	8171754	4178	29865										
NECAB2	0	genome.wustl.edu	37	chr16	84012114	84012114	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggcgtccttaatgagaaaGaactggaggatctctttcac	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	84012114	84012114	G	T	SNP	NECAB2	ENST00000305202	human	ensembl	69_37n	1	known	nonsense	c.292	p.E98*	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB2	HGNC	ENSG00000103154	108	0	0	71	9	11.25	-	-	-	T	84012114	G	T	84012114	4	4	275	1	0	0	0	0	0	1	0	0	10377	943	33	2	302	2	NECAB2	16	84012114	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1829115	84012114	6342639	4179	29866										
ATP2C2	0	genome.wustl.edu	37	chr16	84480011	84480011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagagcagaagtggatggCggtgaaatgcagtctgaaga	15	5	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	84480011	84480011	C	T	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.1478	p.A493V	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	149	0	0	52	10	15.87	-	-	-	T	84480011	C	T	84480011	3	4	275	1	0	0	0	0	1	0	0	0	1148	768	27	1	1540	1	ATP2C2	16	84480011	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	467897	84480011	5874742	4180	29867										
ZNF778	0	genome.wustl.edu	37	chr16	89294118	89294118	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaaggactcacactggagaGaaaccatatgaatgtaaaga	10	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	89294118	89294118	G	T	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	missense	c.1338	p.E446D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	146	0	0	54	43	44.33	-	-	-	T	89294118	G	T	89294118	3	4	275	1	0	0	0	0	1	0	0	0	18244	933	33	2	1356	2	ZNF778	16	89294118	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4814107	89294118	1060635	4181	29868										
C16orf7	0	genome.wustl.edu	37	chr16	89783151	89783151	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacccaccaagcttggcggcCgtcgactgggccctctccag	12	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	89783151	89783151	C	T	SNP	C16orf7	ENST00000389386	human	ensembl	69_37n	-1	known	silent	c.255	p.T85	0.062	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	C16orf7	HGNC	ENSG00000075399	26	0	0	8	11	57.89	-	-	-	T	89783151	C	T	89783151	2	4	275	1	0	0	0	0	0	0	0	1	1841	639	23	1		1	C16orf7	16	89783151	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	489033	89783151	571602	4182	29869										
CENPBD1	0	genome.wustl.edu	37	chr16	90037806	90037806	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggtgtactcaccttcttcGatgatgcttttcagcatttc	9	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	90037806	90037806	G	A	SNP	CENPBD1	ENST00000314994	human	ensembl	69_37n	-1	known	silent	c.525	p.I175	0.000	NULL	pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	CENPBD1	HGNC	ENSG00000177946	62	0	0	17	14	45.16	-	-	-	A	90037806	G	A	90037806	2	1	275	1	0	0	0	0	0	0	0	1	3257	1048	37	1		1	CENPBD1	16	90037806	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	254655	90037806	316947	4183	29870										
GAS8	0	genome.wustl.edu	37	chr16	90106801	90106801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaagaacctcgtgctagaaCgcaagctgcaggctctgagc	11	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	16	90106801	90106801	C	T	SNP	GAS8	ENST00000268699	human	ensembl	69_37n	1	known	missense	c.1105	p.R369C	1.000	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013	66	0	0	22	15	39.47	-	-	-	T	90106801	C	T	90106801	3	4	275	1	0	0	0	0	1	0	0	0	6301	536	19	1	1139	1	GAS8	16	90106801	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	68995	90106801	247952	4184	29871										
NXN	0	genome.wustl.edu	37	chr17	726884	726884	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acactcacccaatgtgcggaGaaatagacgcccacgtgaga	10	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	726884	726884	G	T	SNP	NXN	ENST00000336868	human	ensembl	69_37n	-1	known	missense	c.600	p.F200L	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693	105	0	0	44	12	21.43	-	-	-	T	726884	G	T	726884	3	4	275	1	0	0	0	0	1	0	0	0	10860	933	33	2	731	2	NXN	17	726884	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		726884	80468326	4185	29872										
TIMM22	0	genome.wustl.edu	37	chr17	902167	902167	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtcctatgccaaaaatttCgccattgtgggagccatgtt	9	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	902167	902167	C	T	SNP	TIMM22	ENST00000327158	human	ensembl	69_37n	1	known	silent	c.387	p.F129	0.999	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370	282	0	0	102	73	41.71	-	-	-	T	902167	C	T	902167	2	4	275	1	0	0	0	0	0	0	0	1	16005	883	31	1		1	TIMM22	17	902167	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	175283	902167	80293043	4186	29873										
SERPINF1	0	genome.wustl.edu	37	chr17	1674335	1674335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggcaggagcggagcagcGaacagaatccatcattcacc	11	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	1674335	1674335	G	A	SNP	SERPINF1	ENST00000254722	human	ensembl	69_37n	1	known	missense	c.296	p.R99Q	0.823	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386	124	0	0	43	20	31.75	-	-	-	A	1674335	G	A	1674335	3	1	275	1	0	0	0	0	1	0	0	0	14202	1058	37	1	306	1	SERPINF1	17	1674335	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	772168	1674335	79520875	4187	29874										
TSR1	0	genome.wustl.edu	37	chr17	2236276	2236276	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagattcctcctccataaaAtcctcatgttccatatcatc	3	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	2236276	2236276	A	C	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1284	p.D428E	1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	144	0	0	66	56	45.9	-	-	-	C	2236276	A	C	2236276	3	2	275	1	0	0	0	0	1	0	0	0	16760	98	4	5	1166	5	TSR1	17	2236276	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	561941	2236276	78958934	4188	29875										
TRPV1	0	genome.wustl.edu	37	chr17	3489149	3489149	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttgaagtagaagatgcgCttgacgaatctgtcccactt	10	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	3489149	3489149	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	69_37n	-1	known	silent	c.1296	p.K432	0.998	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPV1-4_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689	149	0	0	57	16	21.92	-	-	-	T	3489149	C	T	3489149	2	4	275	1	0	0	0	0	0	0	0	1	16691	796	28	4		4	TRPV1	17	3489149	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1252873	3489149	77706061	4189	29876										
TRPV1	0	genome.wustl.edu	37	chr17	3493656	3493656	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaccagggccatgttgcgtCtctcgatggcgatgtgcagt	13	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	3493656	3493656	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	69_37n	-1	known	missense	c.635	p.R212K	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPV1-4_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPV1-4_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689	106	0	0	35	5	12.5	-	-	-	T	3493656	C	T	3493656	3	4	275	1	0	0	0	0	1	0	0	0	16691	913	32	2	1605	2	TRPV1	17	3493656	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4507	3493656	77701554	4190	29877										
ITGAE	0	genome.wustl.edu	37	chr17	3655078	3655078	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgagcttatcctgactgaGatcccccatagccgccatgg	10	13	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	3655078	3655078	G	T	SNP	ITGAE	ENST00000263087	human	ensembl	69_37n	-1	known	missense	c.1759	p.L587I	0.874	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAE	HGNC	ENSG00000083457	174	0	0	61	10	14.08	-	-	-	T	3655078	G	T	3655078	3	4	275	1	0	0	0	0	1	0	0	0	7939	942	33	2	1848	2	ITGAE	17	3655078	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	161422	3655078	77540132	4191	29878										
ZZEF1	0	genome.wustl.edu	37	chr17	3962535	3962535	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttgatagtaagtgtctcGaatttctttgtgtagatcag	10	4	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	3962535	3962535	G	A	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	nonsense	c.4933	p.R1645*	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	403	0	0	221	34	13.33	-	-	-	A	3962535	G	A	3962535	4	1	275	1	0	0	0	0	0	1	0	0	18346	1066	37	1	4052	1	ZZEF1	17	3962535	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	307457	3962535	77232675	4192	29879										
ANKFY1	0	genome.wustl.edu	37	chr17	4111374	4111374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatcctccttcctcaggtCgtcctgagaattcacaacac	6	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	4111374	4111374	C	T	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.712	p.D238N	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	124	0	0	78	14	15.22	-	-	-	T	4111374	C	T	4111374	3	4	275	1	0	0	0	0	1	0	0	0	626	884	31	1	3098	1	ANKFY1	17	4111374	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148839	4111374	77083836	4193	29880										
MINK1	0	genome.wustl.edu	37	chr17	4798693	4798693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggctgatgttgctggaccGaagtgggcagggcaaggtgt	19	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	4798693	4798693	G	A	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	missense	c.3134	p.R1045Q	0.998	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	83	0	0	32	9	21.95	-	-	-	A	4798693	G	A	4798693	3	1	275	1	0	0	0	0	1	0	0	0	9658	1058	37	1	3003	1	MINK1	17	4798693	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	687319	4798693	76396517	4194	29881										
ZFP3	0	genome.wustl.edu	37	chr17	4995510	4995510	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtaaagccttcagtcaaaaTtcagcccttattctacacca	5	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	4995510	4995510	T	G	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	1	known	missense	c.711	p.N237K	0.786	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	124	0	0	66	13	16.46	-	-	-	G	4995510	T	G	4995510	3	3	275	1	0	0	0	0	1	0	0	0	17739	1490	52	5	713	5	ZFP3	17	4995510	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	196817	4995510	76199700	4195	29882										
ZNF594	0	genome.wustl.edu	37	chr17	5086860	5086860	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttccccctactgtggattCtctggtgcaggacaaggttt	11	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	5086860	5086860	C	A	SNP	ZNF594	ENST00000399604	human	ensembl	69_37n	-1	known	missense	c.692	p.R231I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626	53	0	0	26	28	51.85	-	-	-	A	5086860	C	A	5086860	3	1	275	1	0	0	0	0	1	0	0	0	18120	913	32	2	1735	2	ZNF594	17	5086860	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	91350	5086860	76108350	4196	29883										
RABEP1	0	genome.wustl.edu	37	chr17	5264753	5264753	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtaggagcagattcagtgtCtgagaactttgatactgcat	12	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	5264753	5264753	C	A	SNP	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	missense	c.1346	p.S449Y	1.000	prints_Rabaptin	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	219	0	0	108	25	18.8	-	-	-	A	5264753	C	A	5264753	3	1	275	1	0	0	0	0	1	0	0	0	13044	913	32	2	1380	2	RABEP1	17	5264753	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	177893	5264753	75930457	4197	29884										
RABEP1	0	genome.wustl.edu	37	chr17	5284833	5284833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaaccacatacagagcacGaaggcagttttgggggacag	15	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	5284833	5284833	G	A	SNP	RABEP1	ENST00000572250	human	ensembl	69_37n	1	putative	missense	c.400	p.E134K	0.000	NULL	pfam_Rabaptin_Rab5-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RABEP1	HGNC	ENSG00000029725	85	0	0	56	14	20	-	-	-	A	5284833	G	A	5284833	3	1	275	1	0	0	0	0	1	0	0	0	13044	1073	37	1		1	RABEP1	17	5284833	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20080	5284833	75910377	4198	29885										
KIAA0753	0	genome.wustl.edu	37	chr17	6528109	6528109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtagagcattcgggcagagCgagcagcttgctcctgtctc	13	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	6528109	6528109	C	T	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.791	p.R264H	0.929	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	204	0	0	52	40	43.48	-	-	-	T	6528109	C	T	6528109	3	4	275	1	0	0	0	0	1	0	0	0	8243	768	27	1	2176	1	KIAA0753	17	6528109	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1243276	6528109	74667101	4199	29886										
PHF23	0	genome.wustl.edu	37	chr17	7139710	7139710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttctttcggtccttctttCgaggaggatgggagaggtcc	15	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7139710	7139710	C	T	SNP	PHF23	ENST00000320316	human	ensembl	69_37n	-1	known	missense	c.536	p.R179Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633	108	0	0	36	11	23.4	-	-	-	T	7139710	C	T	7139710	3	4	275	1	0	0	0	0	1	0	0	0	11909	884	31	1	683	1	PHF23	17	7139710	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	611601	7139710	74055500	4200	29887										
POLR2A	0	genome.wustl.edu	37	chr17	7407065	7407065	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggctcagtggggaggccttCgactggctgcttggggagat	18	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7407065	7407065	C	T	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.3195	p.F1065	0.997	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	185	0	0	44	44	50	-	-	-	T	7407065	C	T	7407065	2	4	275	1	0	0	0	0	0	0	0	1	12288	883	31	1		1	POLR2A	17	7407065	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	267355	7407065	73788145	4201	29888										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7453497	7453497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttcctgaaccgactagttCggcctcgcagaagtggtgag	12	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7453497	7453497	C	T	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	missense	c.268	p.R90W	0.924	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	118	0	0	76	25	24.51	-	-	-	T	7453497	C	T	7453497	3	4	275	1	0	0	0	0	1	0	0	0	16399	875	31	1	278	1	TNFSF12-TNFSF13	17	7453497	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46432	7453497	73741713	4202	29889										
TNFSF12-TNFSF13	0	genome.wustl.edu	37	chr17	7464141	7464141	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaccttcctggggtttgtGaaactgtgattgtgttataa	12	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7464141	7464141	G	T	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	69_37n	1	known	silent	c.984	p.V328	1.000	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871	88	0	0	31	19	38	-	-	-	T	7464141	G	T	7464141	2	4	275	1	0	0	0	0	0	0	0	1	16399	1277	45	2		2	TNFSF12-TNFSF13	17	7464141	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10644	7464141	73731069	4203	29890										
TP53	0	genome.wustl.edu	37	chr17	7579882	7579882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctgactcagagggggctCgacgctaggatctgactgcg	14	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7579882	7579882	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.31	p.E11K	0.191	pfam_p53_transactivation_domain	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	271	0	0	127	33	20.5	-	-	-	T	7579882	C	T	7579882	3	4	275	1	0	0	0	0	1	0	0	0	16477	893	31	1	1279	1	TP53	17	7579882	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115741	7579882	73615328	4204	29891										
DNAH2	0	genome.wustl.edu	37	chr17	7660481	7660481	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagacgccccattacgtggtGaacgtagctgagcgagccga	14	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7660481	7660481	G	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.1977	p.V659	0.445	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	152	0	0	62	34	35.42	-	-	-	T	7660481	G	T	7660481	2	4	275	1	0	0	0	0	0	0	0	1	4638	1277	45	2		2	DNAH2	17	7660481	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	80599	7660481	73534729	4205	29892										
DNAH2	0	genome.wustl.edu	37	chr17	7720727	7720727	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgtcaaccaaatctggatCgggaaggtgagatgggactc	13	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7720727	7720727	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.10014	p.I3338	0.110	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	268	0	0	144	44	23.4	-	-	-	T	7720727	C	T	7720727	2	4	275	1	0	0	0	0	0	0	0	1	4638	874	31	1		1	DNAH2	17	7720727	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60246	7720727	73474483	4206	29893										
CHD3	0	genome.wustl.edu	37	chr17	7800445	7800445	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcgaaactaccagcggaaGaatgacatggatgagccccc	10	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	7800445	7800445	G	T	SNP	CHD3	ENST00000452447	human	ensembl	69_37n	1	putative	nonsense	c.1363	p.E455*	1.000	superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_N,pfam_Znf_PHD-finger,pfam_Chromo_domain,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,pfscan_Znf_PHD-finger,pfscan_Chromo_domain/shadow	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHD3	HGNC	ENSG00000170004	106	0	0	67	11	14.1	-	-	-	T	7800445	G	T	7800445	4	4	275	1	0	0	0	0	0	1	0	0	3355	933	33	2	2075	2	CHD3	17	7800445	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	79718	7800445	73394765	4207	29894										
ALOXE3	0	genome.wustl.edu	37	chr17	8022084	8022084	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcaaacagggtctgaatgCcccgcgtggcattctttccg	12	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	8022084	8022084	C	A	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	missense	c.13	p.A5S	0.000	NULL	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	109	0	0	31	8	20	-	-	-	A	8022084	C	A	8022084	3	1	275	1	0	0	0	0	1	0	0	0	542	739	26	4	2582	4	ALOXE3	17	8022084	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	221639	8022084	73173126	4208	29895										
MYH10	0	genome.wustl.edu	37	chr17	8398504	8398504	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagctgcatccttagcaaatTtaatacccttcttctctgct	4	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	8398504	8398504	T	G	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.3977	p.K1326T	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	211	0	0	70	31	30.69	-	-	-	G	8398504	T	G	8398504	3	3	275	1	0	0	0	0	1	0	0	0	10102	1841	64	5	2068	5	MYH10	17	8398504	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	376420	8398504	72796706	4209	29896										
USP43	0	genome.wustl.edu	37	chr17	9631995	9631996	+	Frame_Shift_Ins	INS	-	-	C													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaggtctctccacaggtgINSccccccgtctccctggtgag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	9631995	9631996	-	C	INS	USP43	ENST00000285199	human	ensembl	69_37n	1	known	frame_shift_ins	c.3060_3061	p.V1022fs	0.000:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	33	0	0	11	3	21.43	-	-	-	C	9631996	-	C	9631995	7	5	275	1	0	1	1	0	0	0	0	0	17171	1306	46	0	3118	0	USP43	17	9631995	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	1233491	9631995	71563215	4210	29897										
MYH13	0	genome.wustl.edu	37	chr17	10224965	10224965	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctgtagagatttcttttCtttggtcaatttggaaatgt	8	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	10224965	10224965	C	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	nonsense	c.2995	p.E999*	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	774	0	0	407	84	17.11	-	-	-	A	10224965	C	A	10224965	4	1	275	1	0	0	0	0	0	1	0	0	10104	922	32	2	2893	2	MYH13	17	10224965	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	592970	10224965	70970245	4211	29898										
MYH8	0	genome.wustl.edu	37	chr17	10302953	10302953	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaagctcactcacttgatCttctagagagcggcacatct	7	12	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	10302953	10302953	C	A	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.3769	p.D1257Y	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	343	0	0	156	31	16.58	-	-	-	A	10302953	C	A	10302953	3	1	275	1	0	0	0	0	1	0	0	0	10113	913	32	2	2096	2	MYH8	17	10302953	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	77988	10302953	70892257	4212	29899										
MYH4	0	genome.wustl.edu	37	chr17	10357902	10357902	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggagttgtaagtcatttttCtcttgcattagcgtcaccat	8	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	10357902	10357902	C	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.2661	p.E887D	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	237	0	0	136	37	21.39	-	-	-	A	10357902	C	A	10357902	3	1	275	1	0	0	0	0	1	0	0	0	10109	912	32	2	3234	2	MYH4	17	10357902	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	54949	10357902	70837308	4213	29900										
MYH2	0	genome.wustl.edu	37	chr17	10443364	10443364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttttcttcattagtaaagCccaaaatatcaatagcactc	3	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	10443364	10443364	C	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.1028	p.G343D	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	219	0	0	140	23	14.11	-	-	-	T	10443364	C	T	10443364	3	4	275	1	0	0	0	0	1	0	0	0	10107	739	26	4	4913	4	MYH2	17	10443364	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85462	10443364	70751846	4214	29901										
DNAH9	0	genome.wustl.edu	37	chr17	11757715	11757715	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacctcacagctgcccaggaGaagctggctgccatcaaagc	11	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	11757715	11757715	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.9903	p.E3301D	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	178	0	0	83	18	17.82	-	-	-	T	11757715	G	T	11757715	3	4	275	1	0	0	0	0	1	0	0	0	4643	933	33	2	10101	2	DNAH9	17	11757715	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1314351	11757715	69437495	4215	29902										
DNAH9	0	genome.wustl.edu	37	chr17	11784683	11784683	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggcctggaggaccagttgCtggccgctgtggtcagcatg	16	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	11784683	11784683	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.10759	p.L3587M	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	50	0	0	33	19	35.85	-	-	-	A	11784683	C	A	11784683	3	1	275	1	0	0	0	0	1	0	0	0	4643	796	28	4	10977	4	DNAH9	17	11784683	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26968	11784683	69410527	4216	29903										
ZNF18	0	genome.wustl.edu	37	chr17	11887496	11887496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgctccttttgagtggaatCcagttgtctccactgttcct	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	11887496	11887496	C	T	SNP	ZNF18	ENST00000322748	human	ensembl	69_37n	-1	known	missense	c.685	p.D229N	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957	168	0	0	74	29	28.16	-	-	-	T	11887496	C	T	11887496	3	4	275	1	0	0	0	0	1	0	0	0	17843	855	30	2	976	2	ZNF18	17	11887496	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102813	11887496	69307714	4217	29904										
MYOCD	0	genome.wustl.edu	37	chr17	12639511	12639511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctccaaatccacggatgCttttgcctttgaagaggaca	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	12639511	12639511	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.449	p.A150V	0.937	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	179	0	0	119	32	21.05	-	-	-	T	12639511	C	T	12639511	3	4	275	1	0	0	0	0	1	0	0	0	10159	797	28	4	471	4	MYOCD	17	12639511	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	752015	12639511	68555699	4218	29905										
TTC19	0	genome.wustl.edu	37	chr17	15928378	15928378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgggcatgtgcttagacGcctgtgctcgctaccttctg	11	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	15928378	15928378	G	A	SNP	TTC19	ENST00000261647	human	ensembl	69_37n	1	novel	missense	c.1087	p.A363T	0.560	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295	142	0	0	56	31	34.83	-	-	-	A	15928378	G	A	15928378	3	1	275	1	0	0	0	0	1	0	0	0	16783	1087	38	1	1117	1	TTC19	17	15928378	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3288867	15928378	65266832	4219	29906										
NCOR1	0	genome.wustl.edu	37	chr17	16042501	16042501	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcatttgtttctcattattCtggaaaaaaaatacaattta	4	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16042501	16042501	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	splice_site	c.1174-1	e11-1	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027	91	0	0	27	14	34.15	-	-	-	A	16042501	C	A	16042501	5	1	275	1	0	0	0	0	0	0	1	0	10307	927	32	2	6289	2	NCOR1	17	16042501	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	114123	16042501	65152709	4220	29907										
PIGL	0	genome.wustl.edu	37	chr17	16221169	16221169	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctgcccttgtctctgcttCatacgcaggatgtcctcttc	7	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16221169	16221169	C	A	SNP	PIGL	ENST00000395844	human	ensembl	69_37n	1	novel	nonsense	c.575	p.S192*	0.000	NULL	pfam_GlcNAc_PIno_de-acetylase,superfamily_LmbE-like_dom	-	no_errors	PIGL	HGNC	ENSG00000108474	72	0	0	45	25	35.71	-	-	-	A	16221169	C	A	16221169	4	1	275	1	0	0	0	0	0	1	0	0	11965	826	29	2	629	2	PIGL	17	16221169	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	178668	16221169	64974041	4221	29908										
TRPV2	0	genome.wustl.edu	37	chr17	16325933	16325933	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggctccacaggtaagacgTgcctgatgaaggctgtgctg	15	9	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16325933	16325933	T	C	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	missense	c.355	p.C119R	0.841	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	90	0	0	35	7	16.67	-	-	-	C	16325933	T	C	16325933	3	2	275	1	0	0	0	0	1	0	0	0	16692	1696	59	5	365	5	TRPV2	17	16325933	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	104764	16325933	64869277	4222	29909										
ZNF624	0	genome.wustl.edu	37	chr17	16537231	16537231	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccatggtcctttcccattCtccaaatgagatatcatgtc	5	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16537231	16537231	C	A	SNP	ZNF624	ENST00000311331	human	ensembl	69_37n	-1	known	missense	c.321	p.E107D	0.998	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566	222	0	0	86	67	43.79	-	-	-	A	16537231	C	A	16537231	3	1	275	1	0	0	0	0	1	0	0	0	18144	912	32	2	2284	2	ZNF624	17	16537231	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	211298	16537231	64657979	4223	29910										
CCDC144A	0	genome.wustl.edu	37	chr17	16638064	16638064	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagattgcatgttgcaggaaGaaattgccttgctgagactg	12	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16638064	16638064	G	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	nonsense	c.2479	p.E827*	1.000	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	83	0	0	38	13	25	-	-	-	T	16638064	G	T	16638064	4	4	275	1	0	0	0	0	0	1	0	0	2802	943	33	2	2525	2	CCDC144A	17	16638064	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	100833	16638064	64557146	4224	29911										
CCDC144A	0	genome.wustl.edu	37	chr17	16638916	16638916	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaatataatcatttaaaaGaaagaatggatcaatgtgag	8	2	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	16638916	16638916	G	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	nonsense	c.3331	p.E1111*	0.997	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	16	0	0	8	3	27.27	-	-	-	T	16638916	G	T	16638916	4	4	275	1	0	0	0	0	0	1	0	0	2802	943	33	2	3377	2	CCDC144A	17	16638916	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	852	16638916	64556294	4225	29912										
PEMT	0	genome.wustl.edu	37	chr17	17425604	17425604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgcttaccagtgcgagcGcaggaagttcaggagcagga	15	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	17425604	17425604	G	A	SNP	PEMT	ENST00000255389	human	ensembl	69_37n	-1	known	missense	c.310	p.R104C	0.856	pfam_PEMT,pirsf_PEMT/MFAP	pfam_PEMT,pirsf_PEMT/MFAP	-	no_errors	PEMT	HGNC	ENSG00000133027	68	0	0	19	8	28.57	-	-	-	A	17425604	G	A	17425604	3	1	275	1	0	0	0	0	1	0	0	0	11799	1087	38	1	420	1	PEMT	17	17425604	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	786688	17425604	63769606	4226	29913										
SLC47A1	0	genome.wustl.edu	37	chr17	19480671	19480671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccttgaaggaattttaacGaacgatgttggaaagacagg	11	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	19480671	19480671	G	A	SNP	SLC47A1	ENST00000581558	human	ensembl	69_37n	1	putative	missense	c.97	p.E33K	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC47A1	HGNC	ENSG00000142494	173	0	0	61	17	21.79	-	-	-	A	19480671	G	A	19480671	3	1	275	1	0	0	0	0	1	0	0	0	14736	1045	37	1	1584	1	SLC47A1	17	19480671	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2055067	19480671	61714539	4227	29914										
SLC47A2	0	genome.wustl.edu	37	chr17	19605986	19605986	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcaccagggcaatgacatCtctgcagaagaaatgagaaa	10	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	19605986	19605986	C	A	SNP	SLC47A2	ENST00000325411	human	ensembl	69_37n	-1	known	missense	c.1204	p.D402Y	1.000	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638	73	0	0	22	17	43.59	-	-	-	A	19605986	C	A	19605986	3	1	275	1	0	0	0	0	1	0	0	0	14737	927	32	2	624	2	SLC47A2	17	19605986	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	125315	19605986	61589224	4228	29915										
KCNJ12	0	genome.wustl.edu	37	chr17	21319233	21319233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccaagaagcgggcacagacGctgctgttcagccacaacgc	11	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	21319233	21319233	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	silent	c.579	p.T193	0.400	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	37	0	0	27	5	15.62	-	-	-	A	21319233	G	A	21319233	2	1	275	1	0	0	0	0	0	0	0	1	8100	1074	38	1		1	KCNJ12	17	21319233	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1713247	21319233	59875977	4229	29916										
KSR1	0	genome.wustl.edu	37	chr17	25919611	25919611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccggtggacagagcagccGaaccccattttggaaccctc	10	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	25919611	25919611	G	A	SNP	KSR1	ENST00000319524	human	ensembl	69_37n	1	known	missense	c.1258	p.E420K	0.996	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068	328	0	0	225	52	18.64	-	-	-	A	25919611	G	A	25919611	3	1	275	1	0	0	0	0	1	0	0	0	8635	1059	37	1	869	1	KSR1	17	25919611	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4600378	25919611	55275599	4230	29917										
NOS2	0	genome.wustl.edu	37	chr17	26105953	26105953	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcacagaagtcccggactccGatctctgtgcccatgtacca	8	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26105953	26105953	G	A	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	silent	c.1134	p.I378	0.942	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	119	0	0	52	12	18.75	-	-	-	A	26105953	G	A	26105953	2	1	275	1	0	0	0	0	0	0	0	1	10615	1048	37	1		1	NOS2	17	26105953	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186342	26105953	55089257	4231	29918										
NOS2	0	genome.wustl.edu	37	chr17	26114738	26114738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtaatattggttgacaaattCgatagcttgaggtagaagct	11	4	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26114738	26114738	C	T	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.433	p.E145K	0.990	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	369	0	0	154	73	32.16	-	-	-	T	26114738	C	T	26114738	3	4	275	1	0	0	0	0	1	0	0	0	10615	893	31	1	3120	1	NOS2	17	26114738	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8785	26114738	55080472	4232	29919										
SEBOX	0	genome.wustl.edu	37	chr17	26691534	26691534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgctggagggtggaggttggCctggcatttggggatcccag	19	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26691534	26691534	C	T	SNP	SEBOX	ENST00000431468	human	ensembl	69_37n	-1	known	missense	c.407	p.G136D	0.018	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SEBOX	HGNC	ENSG00000109072	123	0	0	62	10	13.89	-	-	-	T	26691534	C	T	26691534	3	4	275	1	0	0	0	0	1	0	0	0	14065	739	26	4	247	4	SEBOX	17	26691534	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	576796	26691534	54503676	4233	29920										
SLC46A1	0	genome.wustl.edu	37	chr17	26732244	26732244	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagcagccagaaggccaccGaagtcgccgaggagggcaca	14	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26732244	26732244	G	A	SNP	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	silent	c.471	p.F157	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	56	0	0	27	6	18.18	-	-	-	A	26732244	G	A	26732244	2	1	275	1	0	0	0	0	0	0	0	1	14733	1049	37	1		1	SLC46A1	17	26732244	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40710	26732244	54462966	4234	29921										
FOXN1	0	genome.wustl.edu	37	chr17	26861408	26861408	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatccctcaacaagtgcttCgagaaggtggagaacaaatc	9	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26861408	26861408	C	T	SNP	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	silent	c.987	p.F329	0.952	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	89	0	0	36	4	10	-	-	-	T	26861408	C	T	26861408	2	4	275	1	0	0	0	0	0	0	0	1	6067	883	31	1		1	FOXN1	17	26861408	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	129164	26861408	54333802	4235	29922										
SPAG5	0	genome.wustl.edu	37	chr17	26919268	26919268	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactctgtatcagagccaaGaatcctaccaacatcttcta	5	12	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26919268	26919268	G	T	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.994	p.L332I	0.275	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	108	0	0	91	28	23.53	-	-	-	T	26919268	G	T	26919268	3	4	275	1	0	0	0	0	1	0	0	0	15072	942	33	2	2675	2	SPAG5	17	26919268	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57860	26919268	54275942	4236	29923										
KIAA0100	0	genome.wustl.edu	37	chr17	26955435	26955435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcctcagtagaaagattaCgtttgagtacagctgccttt	11	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	26955435	26955435	C	T	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	missense	c.4442	p.R1481H	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	253	0	0	197	100	33.67	-	-	-	T	26955435	C	T	26955435	3	4	275	1	0	0	0	0	1	0	0	0	8206	536	19	1	2329	1	KIAA0100	17	26955435	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36167	26955435	54239775	4237	29924										
SUPT6H	0	genome.wustl.edu	37	chr17	27008278	27008278	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctcttctttttcaggctcAaggatgtccaatcaatggat	8	9	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	27008278	27008278	A	G	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.1354	p.K452E	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	205	0	0	147	21	12.5	-	-	-	G	27008278	A	G	27008278	3	3	275	1	0	0	0	0	1	0	0	0	15491	131	5	5	1396	5	SUPT6H	17	27008278	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	52843	27008278	54186932	4238	29925										
SUPT6H	0	genome.wustl.edu	37	chr17	27015213	27015213	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgctggcttcctcaagatCgacacggcctccctggggga	13	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	27015213	27015213	C	T	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	silent	c.3111	p.I1037	0.099	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	54	0	0	31	9	22.5	-	-	-	T	27015213	C	T	27015213	2	4	275	1	0	0	0	0	0	0	0	1	15491	874	31	1		1	SUPT6H	17	27015213	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6935	27015213	54179997	4239	29926										
PHF12	0	genome.wustl.edu	37	chr17	27240018	27240018	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttggatttttccgcacaaGaactgcagccgatgtcctct	8	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	27240018	27240018	G	T	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.1571	p.S524Y	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	114	0	0	51	13	20.31	-	-	-	T	27240018	G	T	27240018	3	4	275	1	0	0	0	0	1	0	0	0	11897	942	33	2	1497	2	PHF12	17	27240018	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	224805	27240018	53955192	4240	29927										
PIPOX	0	genome.wustl.edu	37	chr17	27383408	27383408	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgaagggagtgtccctgaGatatcatccttttcttctgc	10	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	27383408	27383408	G	T	SNP	PIPOX	ENST00000580241	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIPOX	HGNC	ENSG00000179761	45	0	0	50	6	10.71	-	-	-	T	27383408	G	T	27383408	1	4	275	0	1	0	0	0	0	0	0	0	12017	957	33	2		2	PIPOX	17	27383408	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	143390	27383408	53811802	4241	29928										
SSH2	0	genome.wustl.edu	37	chr17	28029977	28029977	+	Missense_Mutation	SNP	C	C	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgtatatgcaagcattacCtgcatgcttgttccgtctgt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28029977	28029977	C	A	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	missense	c.211	p.G71C	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	302	0	0	180	41	18.47	-	-	-	A	28029977	C	A	28029977	3	1	275	1	0	0	0	0	1	0	0	0	15276	695	24	4	4112	4	SSH2	17	28029977	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	646569	28029977	53165233	4242	29929	248	2								
SSH2	0	genome.wustl.edu	37	chr17	28029980	28029982	+	In_Frame_Del	DEL	CAT	CAT	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtatatgcaagcattacctgCatgcttgttccgtctgtggc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28029980	28029982	CAT	-	DEL	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	in_frame_del	c.208_206	p.HA69in_frame_delP	1.000:1.000:1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	304	0	0	186	39	17.26	-	-	-	-	28029982	CAT	-	28029980	7	5	275	1	0	1	0	1	0	0	0	0	15276	710	25	0	4115	0	SSH2	17	28029980	In_Frame_Del	DEL	CAT	TCGA-AN-A046-01A-21W-A050-09	3	28029980	53165230	4243	29930	248	2								
EFCAB5	0	genome.wustl.edu	37	chr17	28295980	28295980	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaaaaacctttttgaaaGaatggaggcaagagcccaag	11	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28295980	28295980	G	T	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.362	p.R121I	0.114	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	191	0	0	115	22	16.06	-	-	-	T	28295980	G	T	28295980	3	4	275	1	0	0	0	0	1	0	0	0	4973	942	33	2	376	2	EFCAB5	17	28295980	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	266000	28295980	52899230	4244	29931										
CPD	0	genome.wustl.edu	37	chr17	28750580	28750580	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatgaagtggttggaagaGaactgctgttgaacctcata	12	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28750580	28750580	G	T	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	nonsense	c.1714	p.E572*	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	575	0	0	347	48	12.15	-	-	-	T	28750580	G	T	28750580	4	4	275	1	0	0	0	0	0	1	0	0	3828	943	33	2	1736	2	CPD	17	28750580	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	454600	28750580	52444630	4245	29932										
CPD	0	genome.wustl.edu	37	chr17	28769412	28769412	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaatatccacttgagaaaGagctgccaaacttttgggaa	9	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28769412	28769412	G	T	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	nonsense	c.2317	p.E773*	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	297	0	0	211	42	16.6	-	-	-	T	28769412	G	T	28769412	4	4	275	1	0	0	0	0	0	1	0	0	3828	943	33	2	2355	2	CPD	17	28769412	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18832	28769412	52425798	4246	29933										
GOSR1	0	genome.wustl.edu	37	chr17	28811269	28811269	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaaatggatcaagccaaGacagaatgtttgagacaatg	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	28811269	28811269	G	T	SNP	GOSR1	ENST00000225724	human	ensembl	69_37n	1	known	missense	c.190	p.D64Y	1.000	NULL	NULL	-	no_errors	GOSR1	HGNC	ENSG00000108587	307	0	0	133	66	33.17	-	-	-	T	28811269	G	T	28811269	3	4	275	1	0	0	0	0	1	0	0	0	6626	942	33	2	200	2	GOSR1	17	28811269	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	41857	28811269	52383941	4247	29934										
ADAP2	0	genome.wustl.edu	37	chr17	29283267	29283267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccattttcaggatgccttCgagcagggccaggtttttct	10	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	29283267	29283267	C	T	SNP	ADAP2	ENST00000584828	human	ensembl	69_37n	1	novel	missense	c.260	p.S87L	1.000	pfscan_Pleckstrin_homology	pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAP2	HGNC	ENSG00000184060	76	0	0	46	25	35.21	-	-	-	T	29283267	C	T	29283267	3	4	275	1	0	0	0	0	1	0	0	0	280	883	31	1	929	1	ADAP2	17	29283267	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	471998	29283267	51911943	4248	29935										
RNF135	0	genome.wustl.edu	37	chr17	29326194	29326194	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaattacctgataataaaGcaagtaaaggtgtaaggttt	10	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	29326194	29326194	G	A	SNP	RNF135	ENST00000328381	human	ensembl	69_37n	1	known	silent	c.1284	p.K428	0.002	superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF135	HGNC	ENSG00000181481	135	0	0	105	15	12.5	-	-	-	A	29326194	G	A	29326194	2	1	275	1	0	0	0	0	0	0	0	1	13526	962	34	4		4	RNF135	17	29326194	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	42927	29326194	51869016	4249	29936										
NF1	0	genome.wustl.edu	37	chr17	29653202	29653202	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctgccaccttggctttaGaagaggacctgaaggtattc	11	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	29653202	29653202	G	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.5200	p.E1734*	1.000	superfamily_ARM-type_fold,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	119	0	0	88	17	16.19	-	-	-	T	29653202	G	T	29653202	4	4	275	1	0	0	0	0	0	1	0	0	10428	943	33	2	5407	2	NF1	17	29653202	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	327008	29653202	51542008	4250	29937										
RHOT1	0	genome.wustl.edu	37	chr17	30520205	30520205	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagctctggaggatgtcaaGaatgtagtcagaaaacatat	10	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	30520205	30520205	G	T	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	missense	c.690	p.K230N	1.000	pfam_EF_hand_assoc_2,pirsf_Small_GTPase_Miro	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	371	0	0	302	50	14.2	-	-	-	T	30520205	G	T	30520205	3	4	275	1	0	0	0	0	1	0	0	0	13427	933	33	2	728	2	RHOT1	17	30520205	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	867003	30520205	50675005	4251	29938										
PSMD11	0	genome.wustl.edu	37	chr17	30791091	30791091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgtgtttagagtgcatcGaatgggccaagtcagagaaa	13	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	30791091	30791091	G	A	SNP	PSMD11	ENST00000261712	human	ensembl	69_37n	1	known	missense	c.343	p.E115K	1.000	NULL	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD11	HGNC	ENSG00000108671	326	0	0	153	71	31.7	-	-	-	A	30791091	G	A	30791091	3	1	275	1	0	0	0	0	1	0	0	0	12774	1059	37	1	357	1	PSMD11	17	30791091	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	270886	30791091	50404119	4252	29939										
MYO1D	0	genome.wustl.edu	37	chr17	31087538	31087538	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaagccatagatatccaaGacaccaataacagtgttttt	5	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	31087538	31087538	G	T	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	silent	c.1143	p.V381	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	1149	0	0	958	152	13.69	-	-	-	T	31087538	G	T	31087538	2	4	275	1	0	0	0	0	0	0	0	1	10143	929	33	2		2	MYO1D	17	31087538	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	296447	31087538	50107672	4253	29940										
C17orf102	0	genome.wustl.edu	37	chr17	32906012	32906012	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagccccagagcccccgcgGcccgagaggagctgggcaca	15	16	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	32906012	32906012	G	C	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	silent	c.288	p.G96	0.036	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	29	0	0	3	4	57.14	-	-	-	C	32906012	G	C	32906012	2	2	275	1	0	0	0	0	0	0	0	1	1862	1190	42	4		4	C17orf102	17	32906012	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1818474	32906012	48289198	4254	29941										
UNC45B	0	genome.wustl.edu	37	chr17	33486548	33486548	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catgacaactcacgtaccatCtatgtggtggataatggtga	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33486548	33486548	C	A	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	1	known	silent	c.963	p.I321	1.000	pfam_UNC-45/Ring3	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	139	0	0	104	18	14.75	-	-	-	A	33486548	C	A	33486548	2	1	275	1	0	0	0	0	0	0	0	1	17086	903	32	2		2	UNC45B	17	33486548	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	580536	33486548	47708662	4255	29942										
UNC45B	0	genome.wustl.edu	37	chr17	33497168	33497168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccatagacactcggacccGacgctgggcagtggagggcc	15	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33497168	33497168	G	A	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	1	known	missense	c.1583	p.R528Q	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	43	0	0	18	10	35.71	-	-	-	A	33497168	G	A	33497168	3	1	275	1	0	0	0	0	1	0	0	0	17086	1058	37	1	1625	1	UNC45B	17	33497168	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10620	33497168	47698042	4256	29943										
SLFN5	0	genome.wustl.edu	37	chr17	33588077	33588077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgtgcattcataagaattCggaatgtctgaaagagcagc	11	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33588077	33588077	C	T	SNP	SLFN5	ENST00000299977	human	ensembl	69_37n	1	known	missense	c.1100	p.S367L	0.001	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN5	HGNC	ENSG00000166750	222	0	0	187	26	12.21	-	-	-	T	33588077	C	T	33588077	3	4	275	1	0	0	0	0	1	0	0	0	14826	893	31	1	1106	1	SLFN5	17	33588077	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90909	33588077	47607133	4257	29944										
SLFN12L	0	genome.wustl.edu	37	chr17	33805116	33805116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaggtgatatctcagtggCtgaattttgaagttaatata	11	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33805116	33805116	C	T	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	silent	c.1275	p.Q425	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	328	0	0	222	31	12.25	-	-	-	T	33805116	C	T	33805116	2	4	275	1	0	0	0	0	0	0	0	1	14824	796	28	4		4	SLFN12L	17	33805116	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	217039	33805116	47390094	4258	29945										
SLFN12L	0	genome.wustl.edu	37	chr17	33805145	33805145	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagttaatatattcacgaaGaggataactctgggagacag	11	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33805145	33805145	G	T	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.1246	p.L416I	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	346	0	0	233	32	12.08	-	-	-	T	33805145	G	T	33805145	3	4	275	1	0	0	0	0	1	0	0	0	14824	942	33	2	621	2	SLFN12L	17	33805145	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	29	33805145	47390065	4259	29946										
AP2B1	0	genome.wustl.edu	37	chr17	33935377	33935377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggatttctggattctctaCgggatctcatagcagattca	10	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	33935377	33935377	C	T	SNP	AP2B1	ENST00000312678	human	ensembl	69_37n	1	known	missense	c.496	p.R166W	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,smart_Armadillo,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP2B1	HGNC	ENSG00000006125	74	0	0	59	8	11.94	-	-	-	T	33935377	C	T	33935377	3	4	275	1	0	0	0	0	1	0	0	0	742	527	19	1	510	1	AP2B1	17	33935377	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	130232	33935377	47259833	4260	29947										
AATF	0	genome.wustl.edu	37	chr17	35345829	35345829	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttctagtgaggagatttCtagtgaagatgatgagctgg	13	4	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	35345829	35345829	C	A	SNP	AATF	ENST00000225402	human	ensembl	69_37n	1	known	missense	c.959	p.S320Y	0.008	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270	215	0	0	119	68	36.17	-	-	-	A	35345829	C	A	35345829	3	1	275	1	0	0	0	0	1	0	0	0	25	913	32	2	981	2	AATF	17	35345829	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1410452	35345829	45849381	4261	29948										
ACACA	0	genome.wustl.edu	37	chr17	35518824	35518824	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttctgccctagcaagttcGgaagctctgagaaataacaa	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	35518824	35518824	G	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	silent	c.5220	p.S1740	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	827	1	0.12	401	181	30.99	-	-	-	A	35518824	G	A	35518824	2	1	275	1	0	0	0	0	0	0	0	1	106	1103	39	1		1	ACACA	17	35518824	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	172995	35518824	45676386	4262	29949										
ACACA	0	genome.wustl.edu	37	chr17	35616432	35616432	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcactcacataacccaccatTttggcaagtttcaccgcaca	5	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	35616432	35616432	T	G	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.1350	p.K450N	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	209	0	0	100	18	15.13	-	-	-	G	35616432	T	G	35616432	3	3	275	1	0	0	0	0	1	0	0	0	106	1838	64	5	5981	5	ACACA	17	35616432	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	97608	35616432	45578778	4263	29950										
ACACA	0	genome.wustl.edu	37	chr17	35641761	35641761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcaatcactttatttcccCcaaagcgagtaacaaattct	3	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	35641761	35641761	C	T	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.449	p.G150E	1.000	superfamily_PreATP-grasp_fold	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	228	0	0	169	32	15.92	-	-	-	T	35641761	C	T	35641761	3	4	275	1	0	0	0	0	1	0	0	0	106	623	22	4	6914	4	ACACA	17	35641761	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25329	35641761	45553449	4264	29951										
PCGF2	0	genome.wustl.edu	37	chr17	36895346	36895346	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcagggggtacgctgcataGaaatcccgccgccgtttcat	12	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	36895346	36895346	G	T	SNP	PCGF2	ENST00000360797	human	ensembl	69_37n	-1	known	missense	c.291	p.F97L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661	342	0	0	218	34	13.49	-	-	-	T	36895346	G	T	36895346	3	4	275	1	0	0	0	0	1	0	0	0	11648	933	33	2	767	2	PCGF2	17	36895346	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1253585	36895346	44299864	4265	29952										
CDK12	0	genome.wustl.edu	37	chr17	37671991	37671991	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaccttttctagatgtattCttggggaactattcacaaag	7	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	37671991	37671991	C	A	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.2776	p.L926I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	305	0	0	225	44	16.36	-	-	-	A	37671991	C	A	37671991	3	1	275	1	0	0	0	0	1	0	0	0	3157	913	32	2	2810	2	CDK12	17	37671991	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	776645	37671991	43523219	4266	29953										
ERBB2	0	genome.wustl.edu	37	chr17	37868196	37868196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttagacaactacctttctaCggacgtgggatcctgcaccc	8	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	37868196	37868196	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.917	p.T306M	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	61	0	0	15	8	34.78	-	-	-	T	37868196	C	T	37868196	3	4	275	1	0	0	0	0	1	0	0	0	5243	536	19	1	947	1	ERBB2	17	37868196	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	196205	37868196	43327014	4267	29954										
KRT27	0	genome.wustl.edu	37	chr17	38933915	38933915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccagggccccgatctgagCctggatctgtgccagctgtg	13	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	38933915	38933915	C	T	SNP	KRT27	ENST00000301656	human	ensembl	69_37n	-1	known	missense	c.1042	p.A348T	0.984	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	304	0	0	160	32	16.58	-	-	-	T	38933915	C	T	38933915	3	4	275	1	0	0	0	0	1	0	0	0	8517	739	26	4	349	4	KRT27	17	38933915	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1065719	38933915	42261295	4268	29955										
KRT10	0	genome.wustl.edu	37	chr17	38978345	38978345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttgattcttccagagcccGaactttgtccaagtaggaag	10	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	38978345	38978345	G	A	SNP	KRT10	ENST00000269576	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	0.029	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	258	0	0	116	24	17.14	-	-	-	A	38978345	G	A	38978345	3	1	275	1	0	0	0	0	1	0	0	0	8501	1057	37	1	1293	1	KRT10	17	38978345	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	44430	38978345	42216865	4269	29956										
KRT34	0	genome.wustl.edu	37	chr17	39538333	39538333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaactgcatagtctccttctCgctgccattgaaggagccct	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	39538333	39538333	C	T	SNP	KRT34	ENST00000394001	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737	227	0	0	120	48	28.57	-	-	-	T	39538333	C	T	39538333	3	4	275	1	0	0	0	0	1	0	0	0	8524	893	31	1	1046	1	KRT34	17	39538333	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	559988	39538333	41656877	4270	29957										
KRT14	0	genome.wustl.edu	37	chr17	39738737	39738737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggacaccaccttgccatCgtgcacatccatgaccttgg	10	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	39738737	39738737	C	T	SNP	KRT14	ENST00000167586	human	ensembl	69_37n	-1	known	missense	c.1369	p.D457N	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	162	1	0.61	81	19	19	-	-	-	T	39738737	C	T	39738737	3	4	275	1	0	0	0	0	1	0	0	0	8504	884	31	1	53	1	KRT14	17	39738737	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	200404	39738737	41456473	4271	29958										
FKBP10	0	genome.wustl.edu	37	chr17	39977250	39977250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcggggccaacaaggtgatCgaaggcctggacacgggcct	15	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	39977250	39977250	C	T	SNP	FKBP10	ENST00000455106	human	ensembl	69_37n	1	novel	missense	c.719	p.S240L	0.966	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FKBP10	HGNC	ENSG00000141756	24	0	0	20	5	20	-	-	-	T	39977250	C	T	39977250	3	4	275	1	0	0	0	0	1	0	0	0	5948	874	31	1	1338	1	FKBP10	17	39977250	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	238513	39977250	41217960	4272	29959										
TTC25	0	genome.wustl.edu	37	chr17	40113433	40113433	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaacaagggtatcatcagaGaactgaggaaaaccaactac	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	40113433	40113433	G	T	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.896	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	103	0	0	68	10	12.82	-	-	-	T	40113433	G	T	40113433	1	4	275	0	1	0	0	0	0	0	0	0	16790	943	33	2		2	TTC25	17	40113433	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	136183	40113433	41081777	4273	29960										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40613024	40613024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttggaaaggttcagtttCgtgacgtaagtagttgtggg	14	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	40613024	40613024	C	T	SNP	ATP6V0A1	ENST00000264649	human	ensembl	69_37n	1	known	missense	c.112	p.R38C	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	520	0	0	289	58	16.67	-	-	-	T	40613024	C	T	40613024	3	4	275	1	0	0	0	0	1	0	0	0	1172	884	31	1	114	1	ATP6V0A1	17	40613024	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	499591	40613024	40582186	4274	29961										
EZH1	0	genome.wustl.edu	37	chr17	40880881	40880881	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaagccgtttaagttgtcGaagtcgcatgtattcagatt	10	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	40880881	40880881	G	A	SNP	EZH1	ENST00000428826	human	ensembl	69_37n	-1	known	nonsense	c.79	p.R27*	1.000	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799	148	0	0	113	18	13.74	-	-	-	A	40880881	G	A	40880881	4	1	275	1	0	0	0	0	0	1	0	0	5370	1066	37	1	2240	1	EZH1	17	40880881	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	267857	40880881	40314329	4275	29962										
AOC2	0	genome.wustl.edu	37	chr17	40998016	40998016	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagcccttgtggtcaggtCtgtgtcatctgtgggcaact	12	11	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	40998016	40998016	C	A	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.1373	p.S458Y	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	191	0	0	96	13	11.93	-	-	-	A	40998016	C	A	40998016	3	1	275	1	0	0	0	0	1	0	0	0	728	913	32	2	1375	2	AOC2	17	40998016	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117135	40998016	40197194	4276	29963										
AOC2	0	genome.wustl.edu	37	chr17	41002295	41002295	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggctctgcagcatcaatcCtgtggcctgcctccccgacc	10	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	41002295	41002295	C	A	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.2201	p.P734H	0.409	superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	254	0	0	94	11	10.48	-	-	-	A	41002295	C	A	41002295	3	1	275	1	0	0	0	0	1	0	0	0	728	681	24	4	2215	4	AOC2	17	41002295	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4279	41002295	40192915	4277	29964										
AOC3	0	genome.wustl.edu	37	chr17	41004823	41004823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtggggccatagaaatacGattctatgccacgggctaca	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	41004823	41004823	G	A	SNP	AOC3	ENST00000308423	human	ensembl	69_37n	1	known	missense	c.1463	p.R488Q	0.068	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471	176	0	0	93	13	12.26	-	-	-	A	41004823	G	A	41004823	3	1	275	1	0	0	0	0	1	0	0	0	729	1058	37	1	1465	1	AOC3	17	41004823	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2528	41004823	40190387	4278	29965										
CD300LG	0	genome.wustl.edu	37	chr17	41926056	41926056	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaagggtgggatcctcttCtctcgctgctctggcaccat	12	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	41926056	41926056	C	T	SNP	CD300LG	ENST00000317310	human	ensembl	69_37n	1	known	silent	c.174	p.F58	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LG	HGNC	ENSG00000161649	53	0	0	49	7	12.5	-	-	-	T	41926056	C	T	41926056	2	4	275	1	0	0	0	0	0	0	0	1	3031	912	32	2		2	CD300LG	17	41926056	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	921233	41926056	39269154	4279	29966										
PPY	0	genome.wustl.edu	37	chr17	42018888	42018888	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctgcatactgggccatCtgctctggtgtggcattgtc	12	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	42018888	42018888	C	A	SNP	PPY	ENST00000225992	human	ensembl	69_37n	-1	known	missense	c.135	p.Q45H	1.000	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	PPY	HGNC	ENSG00000108849	127	0	0	48	9	15.79	-	-	-	A	42018888	C	A	42018888	3	1	275	1	0	0	0	0	1	0	0	0	12492	912	32	2	164	2	PPY	17	42018888	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	92832	42018888	39176322	4280	29967										
ITGA2B	0	genome.wustl.edu	37	chr17	42458329	42458329	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggggaaggggctgtccagGacctgggagggacgtgacct	20	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	42458329	42458329	G	T	SNP	ITGA2B	ENST00000262407	human	ensembl	69_37n	-1	known	silent	c.1311	p.V437	0.896	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	109	0	0	60	9	13.04	-	-	-	T	42458329	G	T	42458329	2	4	275	1	0	0	0	0	0	0	0	1	7930	1161	41	2		2	ITGA2B	17	42458329	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	439441	42458329	38736881	4281	29968										
EFTUD2	0	genome.wustl.edu	37	chr17	42962674	42962674	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctccatcagagtgaatttCttggttttcactggcttaat	8	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	42962674	42962674	C	A	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.300	p.K100N	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	418	0	0	276	47	14.51	-	-	-	A	42962674	C	A	42962674	3	1	275	1	0	0	0	0	1	0	0	0	4996	912	32	2	2718	2	EFTUD2	17	42962674	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	504345	42962674	38232536	4282	29969										
NMT1	0	genome.wustl.edu	37	chr17	43159057	43159057	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagccaaaaagaagaaaaaGaaacaaaaaaagaagaaaga	9	3	0	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	43159057	43159057	G	T	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	missense	c.177	p.K59N	1.000	pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	183	0	0	150	27	15.25	-	-	-	T	43159057	G	T	43159057	3	4	275	1	0	0	0	0	1	0	0	0	10575	933	33	2	183	2	NMT1	17	43159057	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	196383	43159057	38036153	4283	29970										
PLEKHM1	0	genome.wustl.edu	37	chr17	43535773	43535773	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctcccgggaaggccggtaGaagtcatcctctgagatcca	12	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	43535773	43535773	G	T	SNP	PLEKHM1	ENST00000430334	human	ensembl	69_37n	-1	known	missense	c.1341	p.F447L	1.000	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	178	1	0.56	115	44	27.67	-	-	-	T	43535773	G	T	43535773	3	4	275	1	0	0	0	0	1	0	0	0	12154	933	33	2	1857	2	PLEKHM1	17	43535773	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	376716	43535773	37659437	4284	29971										
CDC27	0	genome.wustl.edu	37	chr17	45201281	45201281	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaagtaaacgagggattCtttgggaacaatttgtttca	10	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	45201281	45201281	C	A	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	nonsense	c.2224	p.E742*	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	184	0	0	146	29	16.57	-	-	-	A	45201281	C	A	45201281	4	1	275	1	0	0	0	0	0	1	0	0	3095	922	32	2	280	2	CDC27	17	45201281	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1665508	45201281	35993929	4285	29972										
CDC27	0	genome.wustl.edu	37	chr17	45235659	45235659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgatcctttggcaagccGatctgtcttgctgtggagag	12	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	45235659	45235659	G	A	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	missense	c.388	p.R130W	1.000	smart_TPR_repeat	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	108	0	0	43	24	35.82	-	-	-	A	45235659	G	A	45235659	3	1	275	1	0	0	0	0	1	0	0	0	3095	1057	37	1	2164	1	CDC27	17	45235659	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34378	45235659	35959551	4286	29973										
MRPL10	0	genome.wustl.edu	37	chr17	45908747	45908747	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggtcagagattatgggaaGaatcagtagtagaggagggc	18	3	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	45908747	45908747	G	A	SNP	MRPL10	ENST00000421763	human	ensembl	69_37n	-1	known	missense	c.131	p.S44F	0.000	NULL	NULL	-	no_errors	MRPL10	HGNC	ENSG00000159111	84	0	0	57	13	18.57	-	-	-	A	45908747	G	A	45908747	3	1	275	1	0	0	0	0	1	0	0	0	9847	957	33	2		2	MRPL10	17	45908747	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	673088	45908747	35286463	4287	29974										
SP2	0	genome.wustl.edu	37	chr17	46000545	46000545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcatcatcagcctgaatgCagcccagttggcggcagctg	13	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	46000545	46000545	C	T	SNP	SP2	ENST00000376741	human	ensembl	69_37n	1	known	missense	c.1277	p.A426V	0.811	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	134	0	0	88	11	11.11	-	-	-	T	46000545	C	T	46000545	3	4	275	1	0	0	0	0	1	0	0	0	15053	710	25	4	1291	4	SP2	17	46000545	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	91798	46000545	35194665	4288	29975										
CALCOCO2	0	genome.wustl.edu	37	chr17	46928952	46928952	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaccagaagatgtcctcaGaaaatgagaagatgggaatc	10	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	46928952	46928952	G	T	SNP	CALCOCO2	ENST00000258947	human	ensembl	69_37n	1	known	nonsense	c.664	p.E222*	1.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO2	HGNC	ENSG00000136436	332	0	0	259	42	13.95	-	-	-	T	46928952	G	T	46928952	4	4	275	1	0	0	0	0	0	1	0	0	2603	943	33	2	686	2	CALCOCO2	17	46928952	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	928407	46928952	34266258	4289	29976										
UBE2Z	0	genome.wustl.edu	37	chr17	46990262	46990262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttcttcctgttcgtgtttCggtgtccgcccgactatccc	9	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	46990262	46990262	C	T	SNP	UBE2Z	ENST00000360943	human	ensembl	69_37n	1	known	missense	c.457	p.R153W	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Z	HGNC	ENSG00000159202	112	0	0	70	32	30.77	-	-	-	T	46990262	C	T	46990262	3	4	275	1	0	0	0	0	1	0	0	0	16975	875	31	1	467	1	UBE2Z	17	46990262	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61310	46990262	34204948	4290	29977										
PHOSPHO1	0	genome.wustl.edu	37	chr17	47302132	47302132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcgacaaagggatggcttCgtagatggcgctcaggtccc	15	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	47302132	47302132	C	T	SNP	PHOSPHO1	ENST00000413580	human	ensembl	69_37n	-1	known	missense	c.355	p.E119K	1.000	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO1	HGNC	ENSG00000173868	55	0	0	13	6	31.58	-	-	-	T	47302132	C	T	47302132	3	4	275	1	0	0	0	0	1	0	0	0	11930	893	31	1	527	1	PHOSPHO1	17	47302132	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	311870	47302132	33893078	4291	29978										
ZNF652	0	genome.wustl.edu	37	chr17	47375797	47375797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgatgctgtgctgaactgTtcttctctgccaggtgccgc	11	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	47375797	47375797	T	G	SNP	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	missense	c.1799	p.N600T	0.995	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	658	0	0	512	103	16.72	-	-	-	G	47375797	T	G	47375797	3	3	275	1	0	0	0	0	1	0	0	0	18161	1725	60	5	25	5	ZNF652	17	47375797	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	73665	47375797	33819413	4292	29979										
COL1A1	0	genome.wustl.edu	37	chr17	48267911	48267911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctgtacttacgggggcaCcacgagctccagtgggacca	12	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	48267911	48267911	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.2390	p.G797D	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	138	0	0	78	16	17.02	-	-	-	T	48267911	C	T	48267911	3	4	275	1	0	0	0	0	1	0	0	0	3707	507	18	4	2076	4	COL1A1	17	48267911	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	892114	48267911	32927299	4293	29980										
CACNA1G	0	genome.wustl.edu	37	chr17	48683490	48683490	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggaggtgggctccacgaaGagatcagcccttcacaccct	12	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	48683490	48683490	G	T	SNP	CACNA1G	ENST00000416767	human	ensembl	69_37n	1	putative	nonsense	c.4528	p.E1510*	0.002	NULL	pfam_Ion_trans_dom,prints_VDCC_T_a1su	-	no_errors	CACNA1G	HGNC	ENSG00000006283	77	0	0	29	5	14.71	-	-	-	T	48683490	G	T	48683490	4	4	275	1	0	0	0	0	0	1	0	0	2569	943	33	2	4618	2	CACNA1G	17	48683490	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	415579	48683490	32511720	4294	29981										
ABCC3	0	genome.wustl.edu	37	chr17	48753261	48753261	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggtggagctcagtgtgttCtgggattatgccaaggccgt	15	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	48753261	48753261	C	A	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.2877	p.F959L	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	124	0	0	69	15	17.86	-	-	-	A	48753261	C	A	48753261	3	1	275	1	0	0	0	0	1	0	0	0	54	912	32	2	3047	2	ABCC3	17	48753261	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69771	48753261	32441949	4295	29982										
ANKRD40	0	genome.wustl.edu	37	chr17	48774363	48774363	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatctggattaacacccaGctcacagcaacacactctga	6	13	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	48774363	48774363	G	A	SNP	ANKRD40	ENST00000285243	human	ensembl	69_37n	-1	known	silent	c.898	p.L300	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	154	0	0	107	24	18.32	-	-	-	A	48774363	G	A	48774363	2	1	275	1	0	0	0	0	0	0	0	1	668	962	34	4		4	ANKRD40	17	48774363	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21102	48774363	32420847	4296	29983										
MBTD1	0	genome.wustl.edu	37	chr17	49296375	49296375	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactaaaggttgtttctgaaGaacttttgctttctttgttg	8	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	49296375	49296375	G	T	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.319	p.L107I	1.000	NULL	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	231	0	0	145	30	17.14	-	-	-	T	49296375	G	T	49296375	3	4	275	1	0	0	0	0	1	0	0	0	9431	942	33	2	1619	2	MBTD1	17	49296375	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	522012	49296375	31898835	4297	29984										
UTP18	0	genome.wustl.edu	37	chr17	49346251	49346251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcagagactactaagcggaAaacatcttcagatggtgagc	12	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	49346251	49346251	A	C	SNP	UTP18	ENST00000225298	human	ensembl	69_37n	1	known	missense	c.608	p.K203T	0.991	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP18	HGNC	ENSG00000011260	445	1	0.22	321	51	13.71	-	-	-	C	49346251	A	C	49346251	3	2	275	1	0	0	0	0	1	0	0	0	17195	14	1	5	622	5	UTP18	17	49346251	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	49876	49346251	31848959	4298	29985										
TRIM25	0	genome.wustl.edu	37	chr17	54973303	54973303	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacgaggtttcttggatttCttttcctcttctgcaaaaga	7	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	54973303	54973303	C	A	SNP	TRIM25	ENST00000316881	human	ensembl	69_37n	-1	known	missense	c.1164	p.K388N	0.999	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM25	HGNC	ENSG00000121060	527	0	0	392	57	12.69	-	-	-	A	54973303	C	A	54973303	3	1	275	1	0	0	0	0	1	0	0	0	16595	912	32	2	744	2	TRIM25	17	54973303	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5627052	54973303	26221907	4299	29986										
SCPEP1	0	genome.wustl.edu	37	chr17	55065597	55065597	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagttccattctacattttCtcagagtcctatggaggaaa	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	55065597	55065597	C	A	SNP	SCPEP1	ENST00000262288	human	ensembl	69_37n	1	known	missense	c.492	p.F164L	1.000	pfam_Peptidase_S10,prints_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064	265	0	0	235	107	31.29	-	-	-	A	55065597	C	A	55065597	3	1	275	1	0	0	0	0	1	0	0	0	14023	912	32	2	510	2	SCPEP1	17	55065597	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	92294	55065597	26129613	4300	29987										
AKAP1	0	genome.wustl.edu	37	chr17	55184058	55184058	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgccacagcagaggcagcTgttgccccgccggatgctgg	14	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	55184058	55184058	T	G	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	silent	c.1233	p.A411	0.000	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	45	0	0	37	6	13.95	-	-	-	G	55184058	T	G	55184058	2	3	275	1	0	0	0	0	0	0	0	1	445	1567	55	5		5	AKAP1	17	55184058	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	118461	55184058	26011152	4301	29988										
OR4D1	0	genome.wustl.edu	37	chr17	56232787	56232787	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctccatgagaccaagacGatctcctaccagggctgcat	8	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	56232787	56232787	G	A	SNP	OR4D1	ENST00000268912	human	ensembl	69_37n	1	known	silent	c.273	p.T91	0.021	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D1	HGNC	ENSG00000141194	236	1	0.42	138	22	13.75	-	-	-	A	56232787	G	A	56232787	2	1	275	1	0	0	0	0	0	0	0	1	11126	1045	37	1		1	OR4D1	17	56232787	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1048729	56232787	24962423	4302	29989										
MTMR4	0	genome.wustl.edu	37	chr17	56570220	56570220	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacctcagtctctttcttatCaacaggttcccagcttgctt	5	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	56570220	56570220	C	A	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.3304	p.D1102Y	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	215	0	0	152	27	15.08	-	-	-	A	56570220	C	A	56570220	3	1	275	1	0	0	0	0	1	0	0	0	10018	826	29	2	295	2	MTMR4	17	56570220	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	337433	56570220	24624990	4303	29990										
SEPT4	0	genome.wustl.edu	37	chr17	56604083	56604083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagcttgccccatgggctgCggggcctggcagatgggctg	17	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	56604083	56604083	C	T	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	missense	c.362	p.R121H	1.000	NULL	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	38	0	0	20	4	16.67	-	-	-	T	56604083	C	T	56604083	3	4	275	1	0	0	0	0	1	0	0	0	14154	768	27	1	1248	1	SEPT4	17	56604083	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	33863	56604083	24591127	4304	29991										
C17orf47	0	genome.wustl.edu	37	chr17	56620618	56620618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgtgatgatactaagacCtttgcggagggcttggtttc	12	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	56620618	56620618	C	A	SNP	C17orf47	ENST00000321691	human	ensembl	69_37n	-1	known	missense	c.930	p.K310N	0.034	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013	160	0	0	115	19	14.18	-	-	-	A	56620618	C	A	56620618	3	1	275	1	0	0	0	0	1	0	0	0	1873	680	24	4	790	4	C17orf47	17	56620618	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16535	56620618	24574592	4305	29992										
TRIM37	0	genome.wustl.edu	37	chr17	57094720	57094720	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccagggtccactgctcttcGaagtgatagactacctgcta	9	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	57094720	57094720	G	A	SNP	TRIM37	ENST00000262294	human	ensembl	69_37n	-1	known	nonsense	c.2323	p.R775*	1.000	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395	245	0	0	149	31	17.22	-	-	-	A	57094720	G	A	57094720	4	1	275	1	0	0	0	0	0	1	0	0	16607	1066	37	1	599	1	TRIM37	17	57094720	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	474102	57094720	24100490	4306	29993										
SKA2	0	genome.wustl.edu	37	chr17	57196664	57196664	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctaaacaaatctaacctgtCaactgaaagcattacctcca	4	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	57196664	57196664	C	A	SNP	SKA2	ENST00000583380	human	ensembl	69_37n	-1	novel	missense	c.313	p.D105Y	0.002	NULL	NULL	-	no_errors	SKA2	HGNC	ENSG00000182628	153	0	0	151	23	13.14	-	-	-	A	57196664	C	A	57196664	3	1	275	1	0	0	0	0	1	0	0	0	14442	841	29	2		2	SKA2	17	57196664	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	101944	57196664	23998546	4307	29994										
RPS6KB1	0	genome.wustl.edu	37	chr17	57990136	57990136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaatgttttgagctacttCgggtacttggtaaagggggc	14	6	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	57990136	57990136	C	T	SNP	RPS6KB1	ENST00000225577	human	ensembl	69_37n	1	known	missense	c.283	p.R95W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443	267	0	0	133	51	27.72	-	-	-	T	57990136	C	T	57990136	3	4	275	1	0	0	0	0	1	0	0	0	13742	875	31	1	293	1	RPS6KB1	17	57990136	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	793472	57990136	23205074	4308	29995										
RNFT1	0	genome.wustl.edu	37	chr17	58039977	58039977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccaattccaagagaaattCctgttagaaaataagttcca	6	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	58039977	58039977	C	T	SNP	RNFT1	ENST00000305783	human	ensembl	69_37n	-1	known	missense	c.515	p.G172E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050	46	0	0	21	7	25	-	-	-	T	58039977	C	T	58039977	3	4	275	1	0	0	0	0	1	0	0	0	13587	869	30	2	820	2	RNFT1	17	58039977	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49841	58039977	23155233	4309	29996										
USP32	0	genome.wustl.edu	37	chr17	58260600	58260600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcacgtcctcttccccagccGaactctgcgcatccactttc	6	19	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	58260600	58260600	G	A	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4049	p.S1350L	0.293	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	137	0	0	97	28	22.4	-	-	-	A	58260600	G	A	58260600	3	1	275	1	0	0	0	0	1	0	0	0	17160	1059	37	1	781	1	USP32	17	58260600	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	220623	58260600	22934610	4310	29997										
BCAS3	0	genome.wustl.edu	37	chr17	58885371	58885371	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccttcctgtcaggtgctcAaaaatgtgataactttgctg	8	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	58885371	58885371	A	G	SNP	BCAS3	ENST00000390652	human	ensembl	69_37n	1	known	missense	c.410	p.Q137R	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376	232	0	0	91	24	20.87	-	-	-	G	58885371	A	G	58885371	3	3	275	1	0	0	0	0	1	0	0	0	1356	130	5	5	432	5	BCAS3	17	58885371	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	624771	58885371	22309839	4311	29998										
BCAS3	0	genome.wustl.edu	37	chr17	59161889	59161889	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catcccgtccagtctctgatCgaaggggagtttccacagtg	11	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	59161889	59161889	C	T	SNP	BCAS3	ENST00000390652	human	ensembl	69_37n	1	known	nonsense	c.2434	p.R812*	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376	149	0	0	80	25	23.58	-	-	-	T	59161889	C	T	59161889	4	4	275	1	0	0	0	0	0	1	0	0	1356	876	31	1	2520	1	BCAS3	17	59161889	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	276518	59161889	22033321	4312	29999										
BRIP1	0	genome.wustl.edu	37	chr17	59763302	59763302	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgcttcatcttccacaaAattttctggtgatagatgac	6	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	59763302	59763302	A	C	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.2800	p.F934V	0.017	superfamily_TIL_dom	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	288	0	0	168	45	21.03	-	-	-	C	59763302	A	C	59763302	3	2	275	1	0	0	0	0	1	0	0	0	1522	14	1	5	957	5	BRIP1	17	59763302	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	601413	59763302	21431908	4313	30000										
INTS2	0	genome.wustl.edu	37	chr17	59967157	59967157	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacaacttacctaaagtcttCgtgtttgctagaagagcctc	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	59967157	59967157	C	T	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	silent	c.1998	p.T666	0.054	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	334	0	0	199	41	17.01	-	-	-	T	59967157	C	T	59967157	2	4	275	1	0	0	0	0	0	0	0	1	7832	871	31	1		1	INTS2	17	59967157	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	203855	59967157	21228053	4314	30001										
MED13	0	genome.wustl.edu	37	chr17	60142516	60142516	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaccaggcagaagaggttAcagtgacaatcttccaggct	10	11	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	60142516	60142516	A	G	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	silent	c.51	p.C17	1.000	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	19	0	0	3	5	62.5	-	-	-	G	60142516	A	G	60142516	2	3	275	1	0	0	0	0	0	0	0	1	9501	389	14	5		5	MED13	17	60142516	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	175359	60142516	21052694	4315	30002										
TANC2	0	genome.wustl.edu	37	chr17	61176708	61176708	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcggctccagcctgtgaaGaagttaactggtaaggactt	12	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	61176708	61176708	G	T	SNP	TANC2	ENST00000580466	human	ensembl	69_37n	1	novel	nonsense	c.229	p.E77*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	56	0	0	41	7	14.58	-	-	-	T	61176708	G	T	61176708	4	4	275	1	0	0	0	0	0	1	0	0	15637	957	33	2		2	TANC2	17	61176708	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1034192	61176708	20018502	4316	30003										
TANC2	0	genome.wustl.edu	37	chr17	61498178	61498178	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagcctgccaaggcccagaTtgtgagaagtaaccagccca	10	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	61498178	61498178	T	C	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.4835	p.I1612T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	41	0	0	19	14	42.42	-	-	-	C	61498178	T	C	61498178	3	2	275	1	0	0	0	0	1	0	0	0	15637	1493	52	5	4933	5	TANC2	17	61498178	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	321470	61498178	19697032	4317	30004										
DDX42	0	genome.wustl.edu	37	chr17	61895377	61895377	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagagagagatatactgaGaaccggggcagcagccgtca	13	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	61895377	61895377	G	A	SNP	DDX42	ENST00000389924	human	ensembl	69_37n	1	known	silent	c.2436	p.E812	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231	120	0	0	60	11	15.49	-	-	-	A	61895377	G	A	61895377	2	1	275	1	0	0	0	0	0	0	0	1	4393	933	33	2		2	DDX42	17	61895377	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	397199	61895377	19299833	4318	30005										
CD79B	0	genome.wustl.edu	37	chr17	62006622	62006622	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctcacctacagaccacttCacttcccctgtccgcagcgt	6	18	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	62006622	62006622	C	A	SNP	CD79B	ENST00000392795	human	ensembl	69_37n	-1	known	silent	c.657	p.V219	0.992	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like	-	no_errors	CD79B	HGNC	ENSG00000007312	92	0	0	54	8	12.9	-	-	-	A	62006622	C	A	62006622	2	1	275	1	0	0	0	0	0	0	0	1	3066	813	29	2		2	CD79B	17	62006622	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	111245	62006622	19188588	4319	30006										
SCN4A	0	genome.wustl.edu	37	chr17	62021172	62021172	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatggcgttatagtatttCttctgttcctccgtcataaa	6	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	62021172	62021172	C	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.3951	p.K1317N	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	221	1	0.45	148	20	11.83	-	-	-	A	62021172	C	A	62021172	3	1	275	1	0	0	0	0	1	0	0	0	14008	912	32	2	1571	2	SCN4A	17	62021172	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14550	62021172	19174038	4320	30007										
SCN4A	0	genome.wustl.edu	37	chr17	62038792	62038792	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggtgggcctcttccagttCtgggagaggggtggtagcag	18	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	62038792	62038792	C	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	splice_site	c.1607-1	e11-1	1.000	-	-	-	no_errors	SCN4A	HGNC	ENSG00000007314	49	0	0	21	4	16	-	-	-	A	62038792	C	A	62038792	5	1	275	1	0	0	0	0	0	0	1	0	14008	927	32	2	3960	2	SCN4A	17	62038792	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17620	62038792	19156418	4321	30008										
GNA13	0	genome.wustl.edu	37	chr17	63010887	63010887	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttatttcaaagtcgtattCatggatgcctttggtgggtc	10	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	63010887	63010887	C	A	SNP	GNA13	ENST00000439174	human	ensembl	69_37n	-1	known	nonsense	c.622	p.E208*	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA13	HGNC	ENSG00000120063	147	0	0	78	16	17.02	-	-	-	A	63010887	C	A	63010887	4	1	275	1	0	0	0	0	0	1	0	0	6553	835	29	2	515	2	GNA13	17	63010887	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	972095	63010887	18184323	4322	30009										
RGS9	0	genome.wustl.edu	37	chr17	63198115	63198115	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttctcaccatgcaggagaGaatctgggattctgggaagc	12	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	63198115	63198115	G	T	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	missense	c.981	p.E327D	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	120	0	0	81	18	18.18	-	-	-	T	63198115	G	T	63198115	3	4	275	1	0	0	0	0	1	0	0	0	13397	933	33	2	1035	2	RGS9	17	63198115	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	187228	63198115	17997095	4323	30010										
HELZ	0	genome.wustl.edu	37	chr17	65074572	65074572	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctattggccgactccgcGatctgcttgttaggcataag	11	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65074572	65074572	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	silent	c.5625	p.I1875	0.016	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	43	0	0	14	8	36.36	-	-	-	A	65074572	G	A	65074572	2	1	275	1	0	0	0	0	0	0	0	1	7100	1048	37	1		1	HELZ	17	65074572	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1876457	65074572	16120638	4324	30011										
HELZ	0	genome.wustl.edu	37	chr17	65105789	65105789	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacttctgttctgtggatttGattccaaatcaacctagaaa	7	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65105789	65105789	G	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	nonsense	c.3932	p.S1311*	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	369	1	0.27	228	46	16.79	-	-	-	T	65105789	G	T	65105789	4	4	275	1	0	0	0	0	0	1	0	0	7100	1294	45	2	1916	2	HELZ	17	65105789	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31217	65105789	16089421	4325	30012										
HELZ	0	genome.wustl.edu	37	chr17	65110475	65110475	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggctttttctctggtgttcGaatcttattaatttcaggtc	8	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65110475	65110475	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	nonsense	c.3883	p.R1295*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	825	0	0	463	63	11.91	-	-	-	A	65110475	G	A	65110475	4	1	275	1	0	0	0	0	0	1	0	0	7100	1066	37	1	1969	1	HELZ	17	65110475	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4686	65110475	16084735	4326	30013										
HELZ	0	genome.wustl.edu	37	chr17	65116685	65116685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctgatgtgtaataattCgaggatcaactgcaaaccta	8	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65116685	65116685	C	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.3674	p.R1225Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	395	0	0	249	32	11.35	-	-	-	T	65116685	C	T	65116685	3	4	275	1	0	0	0	0	1	0	0	0	7100	884	31	1	2182	1	HELZ	17	65116685	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6210	65116685	16078525	4327	30014										
HELZ	0	genome.wustl.edu	37	chr17	65134098	65134098	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcagataatctcttttttcGaagttcagcacgtattctaa	5	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65134098	65134098	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	nonsense	c.2902	p.R968*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	245	0	0	145	29	16.67	-	-	-	A	65134098	G	A	65134098	4	1	275	1	0	0	0	0	0	1	0	0	7100	1066	37	1	2974	1	HELZ	17	65134098	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17413	65134098	16061112	4328	30015										
HELZ	0	genome.wustl.edu	37	chr17	65162700	65162700	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttcacagaggggtaatcGatttaattgaaactgaagtt	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	65162700	65162700	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	nonsense	c.1789	p.R597*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	289	0	0	115	27	19.01	-	-	-	A	65162700	G	A	65162700	4	1	275	1	0	0	0	0	0	1	0	0	7100	1066	37	1	4115	1	HELZ	17	65162700	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28602	65162700	16032510	4329	30016										
SLC16A6	0	genome.wustl.edu	37	chr17	66274363	66274363	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccgtaggtgaagacttcaacGaagaaaaatgaaacagctac	9	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	66274363	66274363	G	A	SNP	SLC16A6	ENST00000327268	human	ensembl	69_37n	-1	known	silent	c.99	p.F33	0.993	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	161	0	0	149	21	12.28	-	-	-	A	66274363	G	A	66274363	2	1	275	1	0	0	0	0	0	0	0	1	14501	1049	37	1		1	SLC16A6	17	66274363	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1111663	66274363	14920847	4330	30017										
FAM20A	0	genome.wustl.edu	37	chr17	66538248	66538248	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaggtgtgggttgccacaGacagcatactccgtcttgca	12	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	66538248	66538248	G	T	SNP	FAM20A	ENST00000592554	human	ensembl	69_37n	-1	known	silent	c.987	p.V329	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20A	HGNC	ENSG00000108950	195	1	0.51	110	20	15.27	-	-	-	T	66538248	G	T	66538248	2	4	275	1	0	0	0	0	0	0	0	1	5579	929	33	2		2	FAM20A	17	66538248	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	263885	66538248	14656962	4331	30018										
ABCA9	0	genome.wustl.edu	37	chr17	66981104	66981104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgacgggttccccaggatgCtcagcacaaagcacagctgc	11	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	66981104	66981104	C	A	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.4301	p.S1434I	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	703	0	0	425	56	11.64	-	-	-	A	66981104	C	A	66981104	3	1	275	1	0	0	0	0	1	0	0	0	39	797	28	4	597	4	ABCA9	17	66981104	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	442856	66981104	14214106	4332	30019										
ABCA9	0	genome.wustl.edu	37	chr17	67024775	67024775	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatctggccttcatatatgtCaaacaccacacctggcatga	7	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	67024775	67024775	C	A	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.1516	p.D506Y	0.991	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	188	0	0	100	15	13.04	-	-	-	A	67024775	C	A	67024775	3	1	275	1	0	0	0	0	1	0	0	0	39	826	29	2	3470	2	ABCA9	17	67024775	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43671	67024775	14170435	4333	30020										
ABCA6	0	genome.wustl.edu	37	chr17	67083574	67083574	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatcttcatctatgggttCttctggatttggcttagcat	8	8	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	67083574	67083574	C	A	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	nonsense	c.3739	p.E1247*	0.867	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	1293	0	0	828	135	14.02	-	-	-	A	67083574	C	A	67083574	4	1	275	1	0	0	0	0	0	1	0	0	36	922	32	2	1158	2	ABCA6	17	67083574	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	58799	67083574	14111636	4334	30021										
ABCA6	0	genome.wustl.edu	37	chr17	67119456	67119456	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggatgctcagcatcgatttCtttctcaataaccttagcat	7	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	67119456	67119456	C	A	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	nonsense	c.1360	p.E454*	0.952	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	379	0	0	190	77	28.84	-	-	-	A	67119456	C	A	67119456	4	1	275	1	0	0	0	0	0	1	0	0	36	922	32	2	3613	2	ABCA6	17	67119456	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35882	67119456	14075754	4335	30022										
ABCA10	0	genome.wustl.edu	37	chr17	67190043	67190043	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggaagtcaaattgaaaaTtgaactgtggacaaaatcca	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	67190043	67190043	T	G	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1433	p.N478T	0.971	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	311	0	0	180	27	13.04	-	-	-	G	67190043	T	G	67190043	3	3	275	1	0	0	0	0	1	0	0	0	29	1493	52	5	3306	5	ABCA10	17	67190043	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	70587	67190043	14005167	4336	30023										
ABCA5	0	genome.wustl.edu	37	chr17	67293332	67293332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccaaagattgaaccatacCttatggcttcttttcctaca	5	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	67293332	67293332	C	T	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479K	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	164	0	0	90	13	12.62	-	-	-	T	67293332	C	T	67293332	3	4	275	1	0	0	0	0	1	0	0	0	35	695	24	4	3612	4	ABCA5	17	67293332	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	103289	67293332	13901878	4337	30024										
COG1	0	genome.wustl.edu	37	chr17	71197915	71197915	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagggagtttagggctctgaGaaaacagggaaaggtgaaaa	15	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	71197915	71197915	G	T	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.1949	p.R650I	0.998	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	79	0	0	56	11	16.42	-	-	-	T	71197915	G	T	71197915	3	4	275	1	0	0	0	0	1	0	0	0	3687	942	33	2	1975	2	COG1	17	71197915	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3904583	71197915	9997295	4338	30025										
GPR142	0	genome.wustl.edu	37	chr17	72366769	72366769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtccccgtgtgtggctggCgtcatccctgtcatctacta	11	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72366769	72366769	C	T	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	silent	c.468	p.G156	0.018	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	108	0	0	44	8	14.04	-	-	-	T	72366769	C	T	72366769	2	4	275	1	0	0	0	0	0	0	0	1	6700	755	27	1		1	GPR142	17	72366769	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1168854	72366769	8828441	4339	30026										
GPRC5C	0	genome.wustl.edu	37	chr17	72436270	72436270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttctccacctgtgcctctCggcgcttcctctttggggtt	9	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72436270	72436270	C	T	SNP	GPRC5C	ENST00000392627	human	ensembl	69_37n	1	known	missense	c.490	p.R164W	0.902	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412	112	0	0	83	10	10.75	-	-	-	T	72436270	C	T	72436270	3	4	275	1	0	0	0	0	1	0	0	0	6777	875	31	1	504	1	GPRC5C	17	72436270	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69501	72436270	8758940	4340	30027										
C17orf77	0	genome.wustl.edu	37	chr17	72588523	72588523	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggagaaaagaggtgtcattCtttgaaaagactaaggtaca	11	4	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72588523	72588523	C	A	SNP	C17orf77	ENST00000328023	human	ensembl	69_37n	1	known	missense	c.338	p.S113Y	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352	238	0	0	248	47	15.88	-	-	-	A	72588523	C	A	72588523	3	1	275	1	0	0	0	0	1	0	0	0	1898	913	32	2	340	2	C17orf77	17	72588523	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	152253	72588523	8606687	4341	30028										
CD300LF	0	genome.wustl.edu	37	chr17	72699223	72699223	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggggagctgctagtttcttCttgggtgactggtgctgtaa	15	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72699223	72699223	C	A	SNP	CD300LF	ENST00000326165	human	ensembl	69_37n	-1	known	nonsense	c.397	p.E133*	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LF	HGNC	ENSG00000186074	566	0	0	366	48	11.57	-	-	-	A	72699223	C	A	72699223	4	1	275	1	0	0	0	0	0	1	0	0	3030	922	32	2	495	2	CD300LF	17	72699223	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110700	72699223	8495987	4342	30029										
GRIN2C	0	genome.wustl.edu	37	chr17	72842324	72842324	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagacccaatggtgaccagcTtgcagccctcgtccttgcct	9	16	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72842324	72842324	T	C	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	missense	c.2231	p.K744R	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	55	0	0	47	6	11.32	-	-	-	C	72842324	T	C	72842324	3	2	275	1	0	0	0	0	1	0	0	0	6832	1609	56	5	1482	5	GRIN2C	17	72842324	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	143101	72842324	8352886	4343	30030										
USH1G	0	genome.wustl.edu	37	chr17	72915799	72915799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcctcgtccaagcctaaatCgagctcatcccagggcagct	9	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	72915799	72915799	C	T	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	missense	c.1132	p.D378N	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	11	0	0	5	5	50	-	-	-	T	72915799	C	T	72915799	3	4	275	1	0	0	0	0	1	0	0	0	17132	884	31	1	261	1	USH1G	17	72915799	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73475	72915799	8279411	4344	30031										
TSEN54	0	genome.wustl.edu	37	chr17	73519777	73519777	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgggggcttggaaatcatCtttgatgtttaccaggccga	12	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	73519777	73519777	C	A	SNP	TSEN54	ENST00000333213	human	ensembl	69_37n	1	known	silent	c.1347	p.I449	0.996	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173	68	0	0	23	11	32.35	-	-	-	A	73519777	C	A	73519777	2	1	275	1	0	0	0	0	0	0	0	1	16710	903	32	2		2	TSEN54	17	73519777	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	603978	73519777	7675433	4345	30032										
UNC13D	0	genome.wustl.edu	37	chr17	73832921	73832921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctggatccactggtactcGatgctggtgatggggtgcag	15	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	73832921	73832921	G	A	SNP	UNC13D	ENST00000587105	human	ensembl	69_37n	-1	known	missense	c.356	p.S119L	0.153	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UNC13D	HGNC	ENSG00000092929	64	0	0	25	25	50	-	-	-	A	73832921	G	A	73832921	3	1	275	1	0	0	0	0	1	0	0	0	17084	1048	37	1	2218	1	UNC13D	17	73832921	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	313144	73832921	7362289	4346	30033										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74625461	74625461	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtgtcctggctcttccatGattgtgcctctgtcctgcca	9	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	74625461	74625461	G	T	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	nonsense	c.464	p.S155*	0.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	250	0	0	124	21	14.48	-	-	-	T	74625461	G	T	74625461	4	4	275	1	0	0	0	0	0	1	0	0	15314	1294	45	2	1370	2	ST6GALNAC1	17	74625461	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	792540	74625461	6569749	4347	30034										
MGAT5B	0	genome.wustl.edu	37	chr17	74943962	74943962	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagaggcccacgccccgcaGagcccctttgtcctggcccc	10	21	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	74943962	74943962	G	T	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.2001	p.Q667H	0.127	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	93	0	0	19	8	29.63	-	-	-	T	74943962	G	T	74943962	3	4	275	1	0	0	0	0	1	0	0	0	9620	933	33	2	2131	2	MGAT5B	17	74943962	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	318501	74943962	6251248	4348	30035										
TMC8	0	genome.wustl.edu	37	chr17	76131049	76131049	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatttctggtccagctggaGaactaccctcccaacacgga	8	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	76131049	76131049	G	T	SNP	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	missense	c.1086	p.E362D	1.000	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	47	0	0	33	4	10.81	-	-	-	T	76131049	G	T	76131049	3	4	275	1	0	0	0	0	1	0	0	0	16086	933	33	2	1116	2	TMC8	17	76131049	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1187087	76131049	5064161	4349	30036										
CBX8	0	genome.wustl.edu	37	chr17	77768443	77768443	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccacccagcattcatcttttCtctttaaaaaagccttggtc	4	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	77768443	77768443	C	A	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.1161	p.E387D	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	50	0	0	23	4	14.81	-	-	-	A	77768443	C	A	77768443	3	1	275	1	0	0	0	0	1	0	0	0	2749	928	32	2		2	CBX8	17	77768443	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1637394	77768443	3426767	4350	30037										
CCDC40	0	genome.wustl.edu	37	chr17	78032435	78032435	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaggatccgggcagaaatCgagaagaaaaagcaggtatt	14	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78032435	78032435	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	silent	c.1302	p.I434	0.003	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	176	0	0	78	36	31.03	-	-	-	T	78032435	C	T	78032435	2	4	275	1	0	0	0	0	0	0	0	1	2838	874	31	1		1	CCDC40	17	78032435	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	263992	78032435	3162775	4351	30038										
CCDC40	0	genome.wustl.edu	37	chr17	78061517	78061517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaataaaaaccggtgcagctCggaggagctggagcagaaca	14	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78061517	78061517	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	missense	c.2561	p.S854L	0.000	pfam_E3_ubiquit_lig_BRE1	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	165	0	0	77	22	22.22	-	-	-	T	78061517	C	T	78061517	3	4	275	1	0	0	0	0	1	0	0	0	2838	893	31	1	2619	1	CCDC40	17	78061517	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29082	78061517	3133693	4352	30039										
GAA	0	genome.wustl.edu	37	chr17	78090810	78090810	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggactgtggaccaccagctcCtgtggggggaggccctgctc	16	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78090810	78090810	C	A	SNP	GAA	ENST00000302262	human	ensembl	69_37n	1	known	missense	c.2233	p.L745M	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298	38	0	0	21	6	22.22	-	-	-	A	78090810	C	A	78090810	3	1	275	1	0	0	0	0	1	0	0	0	6196	680	24	4	2291	4	GAA	17	78090810	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29293	78090810	3104400	4353	30040										
RNF213	0	genome.wustl.edu	37	chr17	78321589	78321589	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttccgcctgattgtcattGaagagaaagacgtcgtgtac	10	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78321589	78321589	G	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	nonsense	c.9454	p.E3152*	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	46	0	0	17	6	26.09	-	-	-	T	78321589	G	T	78321589	4	4	275	1	0	0	0	0	0	1	0	0	13563	1291	45	2	9883	2	RNF213	17	78321589	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	230779	78321589	2873621	4354	30041										
RNF213	0	genome.wustl.edu	37	chr17	78326788	78326788	+	Frame_Shift_Del	DEL	T	T	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctccggagatccaccctcaTggtttctgatgtgaccaggc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78326788	78326788	T	-	DEL	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	frame_shift_del	c.10352	p.M3451fs	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	70	0	0	47	16	25	-	-	-	-	78326788	T	-	78326788	7	5	275	1	0	1	0	1	0	0	0	0	13563	1464	51	0	10797	0	RNF213	17	78326788	Frame_Shift_Del	DEL	T	TCGA-AN-A046-01A-21W-A050-09	5199	78326788	2868422	4355	30042	249	2								
RNF213	0	genome.wustl.edu	37	chr17	78326791	78326792	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggagatccaccctcatggtINSttctgatgtgaccaggctgc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78326791	78326792	-	A	INS	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	frame_shift_ins	c.10355_10356	p.S3453fs	0.997:0.918	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	66	0	0	47	16	25.4	-	-	-	A	78326792	-	A	78326791	7	5	275	1	0	1	1	0	0	0	0	0	13563	1725	60	0	10800	0	RNF213	17	78326791	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	3	78326791	2868419	4356	30043	249	2								
RNF213	0	genome.wustl.edu	37	chr17	78351596	78351596	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catccttgctccgtgggagaGgtgagtcttggtatttaaga	13	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	78351596	78351596	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.13545	p.E4515	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	218	0	0	111	26	18.98	-	-	-	A	78351596	G	A	78351596	2	1	275	1	0	0	0	0	0	0	0	1	13563	1014	35	4		4	RNF213	17	78351596	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24805	78351596	2843614	4357	30044										
ASPSCR1	0	genome.wustl.edu	37	chr17	79941456	79941456	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggagcgtgctcgacctttCtctccagtggagatttgcca	12	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	79941456	79941456	C	A	SNP	ASPSCR1	ENST00000306729	human	ensembl	69_37n	1	known	missense	c.185	p.S62Y	1.000	pfam_TUG	pfam_TUG,pfam_UBX,pfscan_UBX	-	no_errors	ASPSCR1	HGNC	ENSG00000169696	60	0	0	49	6	10.91	-	-	-	A	79941456	C	A	79941456	3	1	275	1	0	0	0	0	1	0	0	0	1063	913	32	2	195	2	ASPSCR1	17	79941456	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1589860	79941456	1253754	4358	30045										
CCDC57	0	genome.wustl.edu	37	chr17	80130648	80130648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatctgggcaatcgcgtttCgcaagctcgtgttctgctct	10	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	17	80130648	80130648	C	T	SNP	CCDC57	ENST00000389641	human	ensembl	69_37n	-1	known	missense	c.1595	p.R532Q	0.721	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155	119	0	0	99	12	10.81	-	-	-	T	80130648	C	T	80130648	3	4	275	1	0	0	0	0	1	0	0	0	2854	884	31	1	1180	1	CCDC57	17	80130648	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	189192	80130648	1064562	4359	30046										
USP14	0	genome.wustl.edu	37	chr18	178978	178978	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcagatgctcttccagaaGaaccctcagccaaaactgtc	7	14	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	178978	178978	G	T	SNP	USP14	ENST00000261601	human	ensembl	69_37n	1	known	nonsense	c.241	p.E81*	1.000	NULL	pfam_Peptidase_C19,smart_Ubiquitin,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557	136	0	0	67	18	21.18	-	-	-	T	178978	G	T	178978	4	4	275	1	0	0	0	0	0	1	0	0	17142	943	33	2	255	2	USP14	18	178978	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		178978	77898270	4360	30047										
SMCHD1	0	genome.wustl.edu	37	chr18	2705741	2705741	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatggaagcatagtaagatTttttctttatggcgatcatg	9	4	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	2705741	2705741	T	G	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.1892	p.F631C	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	216	0	0	108	17	13.6	-	-	-	G	2705741	T	G	2705741	3	3	275	1	0	0	0	0	1	0	0	0	14877	1841	64	5	1946	5	SMCHD1	18	2705741	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2526763	2705741	75371507	4361	30048										
SMCHD1	0	genome.wustl.edu	37	chr18	2750448	2750448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagacccagaaaaacccgttCgtctcaatgttaaatatgac	6	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	2750448	2750448	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.4108	p.R1370C	0.972	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	299	0	0	197	23	10.41	-	-	-	T	2750448	C	T	2750448	3	4	275	1	0	0	0	0	1	0	0	0	14877	884	31	1	4234	1	SMCHD1	18	2750448	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	44707	2750448	75326800	4362	30049										
SMCHD1	0	genome.wustl.edu	37	chr18	2784502	2784502	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagagatggagatcgaattCgaagtaatggaaagtttggg	14	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	2784502	2784502	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	nonsense	c.5602	p.R1868*	1.000	superfamily_SMC_hinge	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	157	0	0	111	15	11.81	-	-	-	T	2784502	C	T	2784502	4	4	275	1	0	0	0	0	0	1	0	0	14877	876	31	1	5780	1	SMCHD1	18	2784502	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34054	2784502	75292746	4363	30050										
MYOM1	0	genome.wustl.edu	37	chr18	3075754	3075754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaattcagcataggcctcatCgtatgctttaaaagaaaaaa	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	3075754	3075754	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.4654	p.D1552N	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	192	0	0	121	36	22.78	-	-	-	T	3075754	C	T	3075754	3	4	275	1	0	0	0	0	1	0	0	0	10163	884	31	1	419	1	MYOM1	18	3075754	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	291252	3075754	75001494	4364	30051										
TGIF1	0	genome.wustl.edu	37	chr18	3457415	3457415	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcctccctgacatgctgaGaaaggatggcaaagatccaa	10	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	3457415	3457415	G	T	SNP	TGIF1	ENST00000330513	human	ensembl	69_37n	1	known	missense	c.683	p.R228I	1.000	pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeobox_KN_domain,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TGIF1	HGNC	ENSG00000177426	141	0	0	87	26	23.01	-	-	-	T	3457415	G	T	3457415	3	4	275	1	0	0	0	0	1	0	0	0	15920	942	33	2	775	2	TGIF1	18	3457415	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	381661	3457415	74619833	4365	30052										
DLGAP1	0	genome.wustl.edu	37	chr18	3567493	3567493	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcatgtggacttaccacttCtcttcttctacttgcactcc	5	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	3567493	3567493	C	A	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.2052	p.E684D	0.994	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	385	0	0	322	47	12.74	-	-	-	A	3567493	C	A	3567493	3	1	275	1	0	0	0	0	1	0	0	0	4595	912	32	2	901	2	DLGAP1	18	3567493	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110078	3567493	74509755	4366	30053										
ARHGAP28	0	genome.wustl.edu	37	chr18	6870700	6870700	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaaataaacttaagaaatCagagattaagaaagaagact	7	3	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	6870700	6870700	C	T	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	missense	c.923	p.S308L	0.680	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	72	0	0	59	15	20.27	-	-	-	T	6870700	C	T	6870700	3	4	275	1	0	0	0	0	1	0	0	0	879	838	29	2	464	2	ARHGAP28	18	6870700	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3303207	6870700	71206548	4367	30054										
LAMA1	0	genome.wustl.edu	37	chr18	6961602	6961602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccacgtgtgcttcctcacGatcaccccgcttctccacat	5	19	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	6961602	6961602	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.7609	p.R2537C	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	82	0	0	42	17	28.81	-	-	-	A	6961602	G	A	6961602	3	1	275	1	0	0	0	0	1	0	0	0	8659	1058	37	1	1662	1	LAMA1	18	6961602	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90902	6961602	71115646	4368	30055										
PTPRM	0	genome.wustl.edu	37	chr18	8085708	8085708	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcctttgacccagaaataGatttatccaatcagagtgga	8	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	8085708	8085708	G	T	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.1591	p.D531Y	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	167	0	0	100	25	20	-	-	-	T	8085708	G	T	8085708	3	4	275	1	0	0	0	0	1	0	0	0	12889	942	33	2	1629	2	PTPRM	18	8085708	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1124106	8085708	69991540	4369	30056										
ANKRD12	0	genome.wustl.edu	37	chr18	9254427	9254427	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaggaaagaacaacgaaaaGaaaatgaacctgaagcagaa	9	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	9254427	9254427	G	T	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	nonsense	c.1162	p.E388*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	148	0	0	151	32	17.49	-	-	-	T	9254427	G	T	9254427	4	4	275	1	0	0	0	0	0	1	0	0	640	943	33	2	1192	2	ANKRD12	18	9254427	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1168719	9254427	68822821	4370	30057										
ANKRD12	0	genome.wustl.edu	37	chr18	9256080	9256080	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaaaaataaacaatcaGataatagtgaatacagtaaa	5	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	9256080	9256080	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.2815	p.D939N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	219	0	0	164	49	23	-	-	-	A	9256080	G	A	9256080	3	1	275	1	0	0	0	0	1	0	0	0	640	942	33	2	2845	2	ANKRD12	18	9256080	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1653	9256080	68821168	4371	30058										
IMPA2	0	genome.wustl.edu	37	chr18	12009921	12009921	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcggcttctggggccaagtgTgtgctcacccacagcccgac	13	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	12009921	12009921	T	C	SNP	IMPA2	ENST00000269159	human	ensembl	69_37n	1	known	silent	c.270	p.C90	0.977	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401	85	0	0	29	14	32.56	-	-	-	C	12009921	T	C	12009921	2	2	275	1	0	0	0	0	0	0	0	1	7777	1702	59	5		5	IMPA2	18	12009921	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2753841	12009921	66067327	4372	30059										
CEP192	0	genome.wustl.edu	37	chr18	13015425	13015425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgagaaacttatcttaccGacaagcttggaagattcttc	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	13015425	13015425	G	A	SNP	CEP192	ENST00000513432	human	ensembl	69_37n	1	known	missense	c.284	p.R95Q	0.004	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP192	HGNC	ENSG00000101639	429	0	0	295	33	10	-	-	-	A	13015425	G	A	13015425	3	1	275	1	0	0	0	0	1	0	0	0	3280	1045	37	1	636	1	CEP192	18	13015425	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1005504	13015425	65061823	4373	30060										
CEP192	0	genome.wustl.edu	37	chr18	13071096	13071096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaggtagtgttaaaaggcGaagtcatttcttcaggaagt	12	4	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	13071096	13071096	G	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.5233	p.E1745K	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	397	0	0	256	47	15.51	-	-	-	A	13071096	G	A	13071096	3	1	275	1	0	0	0	0	1	0	0	0	3280	1059	37	1	5339	1	CEP192	18	13071096	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	55671	13071096	65006152	4374	30061										
CEP192	0	genome.wustl.edu	37	chr18	13116486	13116486	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcaatctgcgaaataattCttttattacacactcagtaa	4	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	13116486	13116486	C	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.7400	p.S2467Y	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	224	0	0	225	68	23.21	-	-	-	A	13116486	C	A	13116486	3	1	275	1	0	0	0	0	1	0	0	0	3280	913	32	2	7566	2	CEP192	18	13116486	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45390	13116486	64960762	4375	30062										
ZNF519	0	genome.wustl.edu	37	chr18	14105163	14105163	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacattcttcacatttgaaaGacttctctccagtatggatt	5	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	14105163	14105163	G	A	SNP	ZNF519	ENST00000590202	human	ensembl	69_37n	-1	known	missense	c.1376	p.S459F	0.982	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	146	0	0	118	28	19.18	-	-	-	A	14105163	G	A	14105163	3	1	275	1	0	0	0	0	1	0	0	0	18060	942	33	2	250	2	ZNF519	18	14105163	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	988677	14105163	63972085	4376	30063										
ZNF519	0	genome.wustl.edu	37	chr18	14105755	14105755	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatatttcactgatttttCtccagtgttaattatcttat	3	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	14105755	14105755	C	A	SNP	ZNF519	ENST00000590202	human	ensembl	69_37n	-1	known	nonsense	c.784	p.E262*	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	214	0	0	120	45	27.27	-	-	-	A	14105755	C	A	14105755	4	1	275	1	0	0	0	0	0	1	0	0	18060	922	32	2	842	2	ZNF519	18	14105755	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	592	14105755	63971493	4377	30064										
ROCK1	0	genome.wustl.edu	37	chr18	18533611	18533611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggatcttgtagaaagcgttCgaggggaagcacgaacaaaa	13	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	18533611	18533611	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.3989	p.R1330Q	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	629	0	0	455	79	14.71	-	-	-	T	18533611	C	T	18533611	3	4	275	1	0	0	0	0	1	0	0	0	13603	884	31	1	83	1	ROCK1	18	18533611	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4427856	18533611	59543637	4378	30065										
ROCK1	0	genome.wustl.edu	37	chr18	18619483	18619483	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catttttgaagaagagatgtCgtttgatttcttctacacca	7	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	18619483	18619483	C	A	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.1001	p.R334L	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	441	0	0	229	30	11.54	-	-	-	A	18619483	C	A	18619483	3	1	275	1	0	0	0	0	1	0	0	0	13603	884	31	3	3163	3	ROCK1	18	18619483	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85872	18619483	59457765	4379	30066										
ROCK1	0	genome.wustl.edu	37	chr18	18622538	18622538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttactcacctacaagcatttCgtataaaaataccccaaccg	3	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	18622538	18622538	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.808	p.E270K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	129	1	0.77	72	15	17.24	-	-	-	T	18622538	C	T	18622538	3	4	275	1	0	0	0	0	1	0	0	0	13603	893	31	1	3364	1	ROCK1	18	18622538	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3055	18622538	59454710	4380	30067										
ESCO1	0	genome.wustl.edu	37	chr18	19144267	19144267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttaggcaaagaatgatttCgtggtgtctcccttaaaaaa	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	19144267	19144267	C	T	SNP	ESCO1	ENST00000269214	human	ensembl	69_37n	-1	known	missense	c.1718	p.R573Q	0.997	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446	357	0	0	179	58	24.47	-	-	-	T	19144267	C	T	19144267	3	4	275	1	0	0	0	0	1	0	0	0	5285	884	31	1	828	1	ESCO1	18	19144267	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	521729	19144267	58932981	4381	30068										
ABHD3	0	genome.wustl.edu	37	chr18	19231713	19231713	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggattttgcttagcagtttCtattggaatagcttcagacc	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	19231713	19231713	C	A	SNP	ABHD3	ENST00000289119	human	ensembl	69_37n	-1	known	nonsense	c.1069	p.E357*	1.000	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD3	HGNC	ENSG00000158201	76	0	0	64	11	14.67	-	-	-	A	19231713	C	A	19231713	4	1	275	1	0	0	0	0	0	1	0	0	83	922	32	2	164	2	ABHD3	18	19231713	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	87446	19231713	58845535	4382	30069										
CTAGE1	0	genome.wustl.edu	37	chr18	19995755	19995755	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggccccttgtatctactgGaaacaataaacctctgattg	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	19995755	19995755	G	T	SNP	CTAGE1	ENST00000391403	human	ensembl	69_37n	-1	known	missense	c.2020	p.P674T	0.099	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710	187	0	0	154	26	14.44	-	-	-	T	19995755	G	T	19995755	3	4	275	1	0	0	0	0	1	0	0	0	4024	1174	41	2	221	2	CTAGE1	18	19995755	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	764042	19995755	58081493	4383	30070										
RBBP8	0	genome.wustl.edu	37	chr18	20562314	20562314	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccccatgtccgatacataGaacaaacacatactaaattg	4	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	20562314	20562314	G	T	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	nonsense	c.562	p.E188*	0.811	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	326	1	0.31	250	40	13.79	-	-	-	T	20562314	G	T	20562314	4	4	275	1	0	0	0	0	0	1	0	0	13188	943	33	2	584	2	RBBP8	18	20562314	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	566559	20562314	57514934	4384	30071										
CABLES1	0	genome.wustl.edu	37	chr18	20774417	20774417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gactttatttttcagatgtcGaactctctcaggttcaccca	6	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	20774417	20774417	G	A	SNP	CABLES1	ENST00000256925	human	ensembl	69_37n	1	known	missense	c.923	p.R308Q	1.000	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508	77	0	0	53	7	11.67	-	-	-	A	20774417	G	A	20774417	3	1	275	1	0	0	0	0	1	0	0	0	2554	1058	37	1	987	1	CABLES1	18	20774417	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	212103	20774417	57302831	4385	30072										
C18orf8	0	genome.wustl.edu	37	chr18	21096373	21096373	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcctttccgaaagagacatCgcaatggctaccatgtatgt	9	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	21096373	21096373	C	T	SNP	C18orf8	ENST00000269221	human	ensembl	69_37n	1	known	silent	c.639	p.I213	0.268	superfamily_WD40_repeat_dom	pfam_Mic1,superfamily_WD40_repeat_dom	-	no_errors	C18orf8	HGNC	ENSG00000141452	106	0	0	99	15	13.16	-	-	-	T	21096373	C	T	21096373	2	4	275	1	0	0	0	0	0	0	0	1	1925	874	31	1		1	C18orf8	18	21096373	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	321956	21096373	56980875	4386	30073										
LAMA3	0	genome.wustl.edu	37	chr18	21330924	21330924	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcgtccaggtgcaaaaaatTttactttctctcacaccctg	6	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	21330924	21330924	T	G	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.727	p.F243V	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	299	0	0	153	55	26.44	-	-	-	G	21330924	T	G	21330924	3	3	275	1	0	0	0	0	1	0	0	0	8661	1841	64	5	745	5	LAMA3	18	21330924	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	234551	21330924	56746324	4387	30074										
LAMA3	0	genome.wustl.edu	37	chr18	21483960	21483960	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactaagtgacaaagtaagaGaactttccagatctgctggc	9	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	21483960	21483960	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	nonsense	c.6382	p.E2128*	0.999	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	128	0	0	64	15	18.99	-	-	-	T	21483960	G	T	21483960	4	4	275	1	0	0	0	0	0	1	0	0	8661	943	33	2	6755	2	LAMA3	18	21483960	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	153036	21483960	56593288	4388	30075										
TTC39C	0	genome.wustl.edu	37	chr18	21662876	21662876	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctctccctcttcctctaGattagctctgctctggtatc	5	14	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	21662876	21662876	G	T	SNP	TTC39C	ENST00000317571	human	ensembl	69_37n	1	known	splice_site	c.816-1	e6-1	0.997	-	-	-	no_errors	TTC39C	HGNC	ENSG00000168234	241	0	0	162	48	22.86	-	-	-	T	21662876	G	T	21662876	5	4	275	1	0	0	0	0	0	0	1	0	16806	956	33	2	837	2	TTC39C	18	21662876	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	178916	21662876	56414372	4389	30076										
OSBPL1A	0	genome.wustl.edu	37	chr18	21914262	21914262	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctgctgctaaaagtaattCttcaagctttctttgttgag	8	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	21914262	21914262	C	A	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	nonsense	c.427	p.E143*	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	308	0	0	241	42	14.84	-	-	-	A	21914262	C	A	21914262	4	1	275	1	0	0	0	0	0	1	0	0	11350	922	32	2	2517	2	OSBPL1A	18	21914262	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	251386	21914262	56162986	4390	30077										
IMPACT	0	genome.wustl.edu	37	chr18	22030766	22030766	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtcatctaaggctttgggAaagaacaaaaaagtaagaaa	10	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	22030766	22030766	A	G	SNP	IMPACT	ENST00000580035	human	ensembl	69_37n	1	known	missense	c.10	p.K4E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IMPACT	HGNC	ENSG00000154059	521	0	0	401	66	14.13	-	-	-	G	22030766	A	G	22030766	3	3	275	1	0	0	0	0	1	0	0	0	7778	233	9	5	960	5	IMPACT	18	22030766	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	116504	22030766	56046482	4391	30078										
ZNF521	0	genome.wustl.edu	37	chr18	22805863	22805863	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaaggattcttggttgggGaattccttgttgcactgagg	14	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	22805863	22805863	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.2019	p.F673	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	86	0	0	58	10	14.71	-	-	-	A	22805863	G	A	22805863	2	1	275	1	0	0	0	0	0	0	0	1	18061	1165	41	2		2	ZNF521	18	22805863	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	775097	22805863	55271385	4392	30079										
ZNF521	0	genome.wustl.edu	37	chr18	22805938	22805938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttttaggtgagtctgaaaGctgtctagggatgtgtactt	13	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	22805938	22805938	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.1944	p.S648	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	96	0	0	56	8	12.5	-	-	-	A	22805938	G	A	22805938	2	1	275	1	0	0	0	0	0	0	0	1	18061	962	34	4		4	ZNF521	18	22805938	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	75	22805938	55271310	4393	30080										
DSC3	0	genome.wustl.edu	37	chr18	28588374	28588374	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcatccagatccctcacatGaactgtaaccaaggctctgt	6	14	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28588374	28588374	G	T	SNP	DSC3	ENST00000360428	human	ensembl	69_37n	-1	known	missense	c.1381	p.H461N	0.030	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762	147	0	0	97	24	19.83	-	-	-	T	28588374	G	T	28588374	3	4	275	1	0	0	0	0	1	0	0	0	4802	1290	45	2	1368	2	DSC3	18	28588374	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5782436	28588374	49488874	4394	30081										
DSC3	0	genome.wustl.edu	37	chr18	28598154	28598154	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caattggcagtgttaattaaAtccttatcttctataggtat	6	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28598154	28598154	A	T	SNP	DSC3	ENST00000360428	human	ensembl	69_37n	-1	known	missense	c.1146	p.D382E	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762	295	0	0	177	62	25.83	-	-	-	T	28598154	A	T	28598154	3	4	275	1	0	0	0	0	1	0	0	0	4802	98	4	5	1607	5	DSC3	18	28598154	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	9780	28598154	49479094	4395	30082										
DSC2	0	genome.wustl.edu	37	chr18	28649015	28649015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtcctcctttcaccatttCgatggtctcctgacctccgt	7	15	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28649015	28649015	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.2353	p.E785K	0.979	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	142	0	0	82	18	18	-	-	-	T	28649015	C	T	28649015	3	4	275	1	0	0	0	0	1	0	0	0	4801	893	31	1	400	1	DSC2	18	28649015	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50861	28649015	49428233	4396	30083										
DSC2	0	genome.wustl.edu	37	chr18	28651676	28651676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgatgtgtgcagtcattttCggtaatgcagtcacacagtg	11	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28651676	28651676	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.2020	p.E674K	0.001	smart_Cadherin,pfscan_Cadherin,prints_Desmocollin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	228	0	0	126	97	43.11	-	-	-	T	28651676	C	T	28651676	3	4	275	1	0	0	0	0	1	0	0	0	4801	893	31	1	741	1	DSC2	18	28651676	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2661	28651676	49425572	4397	30084										
DSC2	0	genome.wustl.edu	37	chr18	28659854	28659854	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatattatatatgccatttTtgatggtctctgcctctcta	5	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28659854	28659854	T	G	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.1622	p.K541T	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	415	0	0	362	69	16.01	-	-	-	G	28659854	T	G	28659854	3	3	275	1	0	0	0	0	1	0	0	0	4801	1841	64	5	1147	5	DSC2	18	28659854	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	8178	28659854	49417394	4398	30085										
DSC2	0	genome.wustl.edu	37	chr18	28672105	28672105	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaaatattttcttcttttCttggttctcagtgttggaaa	7	6	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28672105	28672105	C	A	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	nonsense	c.313	p.E105*	0.303	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	222	1	0.45	123	48	28.07	-	-	-	A	28672105	C	A	28672105	4	1	275	1	0	0	0	0	0	1	0	0	4801	922	32	2	2488	2	DSC2	18	28672105	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12251	28672105	49405143	4399	30086										
DSG1	0	genome.wustl.edu	37	chr18	28906914	28906914	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacgtgaatggatcaagttCgcagcagcctgtcgtgaagg	13	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28906914	28906914	C	T	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	1	known	silent	c.162	p.F54	0.656	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	165	0	0	112	34	23.29	-	-	-	T	28906914	C	T	28906914	2	4	275	1	0	0	0	0	0	0	0	1	4811	883	31	1		1	DSG1	18	28906914	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	234809	28906914	49170334	4400	30087										
DSG4	0	genome.wustl.edu	37	chr18	28968333	28968333	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctatttttcttatagattCgatcagactgcgaatcgaac	7	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	28968333	28968333	C	T	SNP	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	nonsense	c.220	p.R74*	1.000	pfam_Cadherin,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	219	0	0	101	45	30.82	-	-	-	T	28968333	C	T	28968333	4	4	275	1	0	0	0	0	0	1	0	0	4814	876	31	1	234	1	DSG4	18	28968333	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	61419	28968333	49108915	4401	30088										
MEP1B	0	genome.wustl.edu	37	chr18	29795179	29795179	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgaaaggctgaaaagcagaGattttataaaaggagatgat	11	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	29795179	29795179	G	T	SNP	MEP1B	ENST00000269202	human	ensembl	69_37n	1	known	missense	c.1714	p.D572Y	1.000	pirsf_Pept_M12A_Meprin,pfam_MATH,superfamily_TRAF-like,pfscan_MATH	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434	463	0	0	263	41	13.49	-	-	-	T	29795179	G	T	29795179	3	4	275	1	0	0	0	0	1	0	0	0	9547	942	33	2	1760	2	MEP1B	18	29795179	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	826846	29795179	48282069	4402	30089										
DTNA	0	genome.wustl.edu	37	chr18	32345995	32345995	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcttaggtttgttcagaaGaaatgcaattgtaagtatgc	10	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	32345995	32345995	G	T	SNP	DTNA	ENST00000269190	human	ensembl	69_37n	1	known	missense	c.138	p.K46N	1.000	pfam_EF-hand_dom_typ1,pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769	220	0	0	106	44	29.33	-	-	-	T	32345995	G	T	32345995	3	4	275	1	0	0	0	0	1	0	0	0	4823	933	33	2	144	2	DTNA	18	32345995	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2550816	32345995	45731253	4403	30090										
ZNF397	0	genome.wustl.edu	37	chr18	32825747	32825747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcagccctcattagacatCggaaaatccatactggtgag	9	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	32825747	32825747	C	T	SNP	ZNF397	ENST00000330501	human	ensembl	69_37n	1	known	missense	c.1078	p.R360W	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	184	0	0	110	24	17.91	-	-	-	T	32825747	C	T	32825747	3	4	275	1	0	0	0	0	1	0	0	0	17979	875	31	1	1088	1	ZNF397	18	32825747	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	479752	32825747	45251501	4404	30091										
ELP2	0	genome.wustl.edu	37	chr18	33738853	33738853	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcattgggattatcaaataAagctgtctttcagggtaagg	11	5	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	33738853	33738853	A	C	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	missense	c.1520	p.K507T	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	281	0	0	235	35	12.96	-	-	-	C	33738853	A	C	33738853	3	2	275	1	0	0	0	0	1	0	0	0	5117	14	1	5	1574	5	ELP2	18	33738853	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	913106	33738853	44338395	4405	30092										
SETBP1	0	genome.wustl.edu	37	chr18	42532520	42532520	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacggtcagtacccagctcCtttgtacctatcgcacacgc	7	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	42532520	42532520	C	A	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.3215	p.P1072H	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	199	1	0.5	140	26	15.66	-	-	-	A	42532520	C	A	42532520	3	1	275	1	0	0	0	0	1	0	0	0	14217	681	24	4	3418	4	SETBP1	18	42532520	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8793667	42532520	35544728	4406	30093										
SETBP1	0	genome.wustl.edu	37	chr18	42533106	42533106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagatactctggcagtggCggggatggtggcagcacgag	17	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	42533106	42533106	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	silent	c.3801	p.G1267	0.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	312	1	0.32	198	39	16.32	-	-	-	T	42533106	C	T	42533106	2	4	275	1	0	0	0	0	0	0	0	1	14217	755	27	1		1	SETBP1	18	42533106	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	586	42533106	35544142	4407	30094										
SETBP1	0	genome.wustl.edu	37	chr18	42643264	42643264	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggaagcagcccacccagttCgatgaggactccagagacca	11	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	42643264	42643264	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	silent	c.4392	p.F1464	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	75	0	0	29	9	23.68	-	-	-	T	42643264	C	T	42643264	2	4	275	1	0	0	0	0	0	0	0	1	14217	883	31	1		1	SETBP1	18	42643264	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110158	42643264	35433984	4408	30095										
SLC14A2	0	genome.wustl.edu	37	chr18	43247820	43247820	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtccccagtgttccagttCtttgactgggtcctccgagg	11	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	43247820	43247820	C	A	SNP	SLC14A2	ENST00000255226	human	ensembl	69_37n	1	known	missense	c.1740	p.F580L	0.041	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874	222	0	0	155	29	15.76	-	-	-	A	43247820	C	A	43247820	3	1	275	1	0	0	0	0	1	0	0	0	14486	912	32	2	1790	2	SLC14A2	18	43247820	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	604556	43247820	34829428	4409	30096										
SLC14A2	0	genome.wustl.edu	37	chr18	43262473	43262473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taacaaagtatcaggcctacGatgtctcctaagtttccctg	7	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	43262473	43262473	G	A	SNP	SLC14A2	ENST00000255226	human	ensembl	69_37n	1	known	missense	c.2752	p.D918N	0.925	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874	203	0	0	206	40	16.19	-	-	-	A	43262473	G	A	43262473	3	1	275	1	0	0	0	0	1	0	0	0	14486	1058	37	1	2826	1	SLC14A2	18	43262473	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14653	43262473	34814775	4410	30097										
ATP5A1	0	genome.wustl.edu	37	chr18	43664271	43664271	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttcaaatccagccaagaAatttgttacaatctctttca	4	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	43664271	43664271	A	C	SNP	ATP5A1	ENST00000282050	human	ensembl	69_37n	-1	known	missense	c.1639	p.F547V	1.000	superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234	357	0	0	225	38	14.45	-	-	-	C	43664271	A	C	43664271	3	2	275	1	0	0	0	0	1	0	0	0	1151	14	1	5	26	5	ATP5A1	18	43664271	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	401798	43664271	34412977	4411	30098										
KATNAL2	0	genome.wustl.edu	37	chr18	44595969	44595969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggattcagaaaaactcgttCgggtaggaattcttaatttt	10	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	44595969	44595969	C	T	SNP	KATNAL2	ENST00000245121	human	ensembl	69_37n	1	known	missense	c.790	p.R264W	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216	325	0	0	154	53	25.6	-	-	-	T	44595969	C	T	44595969	3	4	275	1	0	0	0	0	1	0	0	0	8040	875	31	1	824	1	KATNAL2	18	44595969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	931698	44595969	33481279	4412	30099										
HDHD2	0	genome.wustl.edu	37	chr18	44660960	44660960	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgcagtcagagatgtgaAtatttcatcttcagagatat	10	6	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	44660960	44660960	A	G	SNP	HDHD2	ENST00000300605	human	ensembl	69_37n	-1	known	missense	c.217	p.F73L	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	-	no_errors	HDHD2	HGNC	ENSG00000167220	332	0	0	271	36	11.69	-	-	-	G	44660960	A	G	44660960	3	3	275	1	0	0	0	0	1	0	0	0	7074	101	4	5	582	5	HDHD2	18	44660960	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	64991	44660960	33416288	4413	30100										
SMAD2	0	genome.wustl.edu	37	chr18	45422969	45422969	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatctaatcgtcctgttttCtttagcttcttcaccagact	4	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	45422969	45422969	C	A	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	missense	c.159	p.K53N	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	812	0	0	724	82	10.16	-	-	-	A	45422969	C	A	45422969	3	1	275	1	0	0	0	0	1	0	0	0	14847	912	32	2	1284	2	SMAD2	18	45422969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	762009	45422969	32654279	4414	30101										
DYM	0	genome.wustl.edu	37	chr18	46812897	46812897	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacaccagcagaagcaggaGactctggttggccagagggg	15	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	46812897	46812897	G	T	SNP	DYM	ENST00000269445	human	ensembl	69_37n	-1	known	missense	c.853	p.L285I	1.000	pfam_Dymeclin	pfam_Dymeclin,superfamily_ARM-type_fold	-	no_errors	DYM	HGNC	ENSG00000141627	127	0	0	94	15	13.76	-	-	-	T	46812897	G	T	46812897	3	4	275	1	0	0	0	0	1	0	0	0	4875	942	33	2	1192	2	DYM	18	46812897	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1389928	46812897	31264351	4415	30102										
LIPG	0	genome.wustl.edu	37	chr18	47113181	47113181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggccgggagctctggtttcGcaagtgtcgggatggctgga	18	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	47113181	47113181	G	A	SNP	LIPG	ENST00000261292	human	ensembl	69_37n	1	known	missense	c.1442	p.R481H	0.777	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep,pfscan_LipOase_LH2	-	no_errors	LIPG	HGNC	ENSG00000101670	339	0	0	232	34	12.69	-	-	-	A	47113181	G	A	47113181	3	1	275	1	0	0	0	0	1	0	0	0	8879	1087	38	1	1476	1	LIPG	18	47113181	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	300284	47113181	30964067	4416	30103										
MBD1	0	genome.wustl.edu	37	chr18	47800616	47800616	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcttctggttgctgcccccGaatttgggcttgtcgcagca	12	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	47800616	47800616	G	A	SNP	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	silent	c.1239	p.F413	0.646	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	47	0	0	11	3	21.43	-	-	-	A	47800616	G	A	47800616	2	1	275	1	0	0	0	0	0	0	0	1	9413	1049	37	1		1	MBD1	18	47800616	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	687435	47800616	30276632	4417	30104										
SKA1	0	genome.wustl.edu	37	chr18	47902280	47902280	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaaaaccttatcattaaGaaactgtggtaagtaaaaca	6	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	47902280	47902280	G	T	SNP	SKA1	ENST00000285116	human	ensembl	69_37n	1	known	missense	c.80	p.R27I	1.000	pfam_DUF1395	pfam_DUF1395	-	no_errors	SKA1	HGNC	ENSG00000154839	129	0	0	66	16	19.51	-	-	-	T	47902280	G	T	47902280	3	4	275	1	0	0	0	0	1	0	0	0	14441	942	33	2	82	2	SKA1	18	47902280	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	101664	47902280	30174968	4418	30105										
MRO	0	genome.wustl.edu	37	chr18	48327795	48327795	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttaacctgactggtgaaaAattttttccatttcctcccg	6	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	48327795	48327795	A	C	SNP	MRO	ENST00000436348	human	ensembl	69_37n	-1	known	missense	c.551	p.F184C	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MRO	HGNC	ENSG00000134042	382	1	0.26	374	56	13.02	-	-	-	C	48327795	A	C	48327795	3	2	275	1	0	0	0	0	1	0	0	0	9844	14	1	5	249	5	MRO	18	48327795	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	425515	48327795	29749453	4419	30106										
MRO	0	genome.wustl.edu	37	chr18	48331618	48331618	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagaacgacggtcagagtcTtcatactctcatggatgact	9	11	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	48331618	48331618	T	A	SNP	MRO	ENST00000436348	human	ensembl	69_37n	-1	known	missense	c.377	p.K126M	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MRO	HGNC	ENSG00000134042	169	0	0	158	22	12.22	-	-	-	A	48331618	T	A	48331618	3	1	275	1	0	0	0	0	1	0	0	0	9844	1609	56	5	427	5	MRO	18	48331618	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3823	48331618	29745630	4420	30107										
ME2	0	genome.wustl.edu	37	chr18	48446853	48446853	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggaacacactcattcagttCgaagactttggaaatcataa	7	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	48446853	48446853	C	T	SNP	ME2	ENST00000321341	human	ensembl	69_37n	1	known	silent	c.762	p.F254	1.000	pfam_Malic_N,prints_Malic_OxRdtase	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	202	0	0	97	38	28.15	-	-	-	T	48446853	C	T	48446853	2	4	275	1	0	0	0	0	0	0	0	1	9489	883	31	1		1	ME2	18	48446853	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	115235	48446853	29630395	4421	30108										
DCC	0	genome.wustl.edu	37	chr18	50832017	50832017	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattaccggctataaaattCgacacagaaagacgacccgc	7	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	50832017	50832017	C	T	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	nonsense	c.1981	p.R661*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	178	0	0	139	17	10.83	-	-	-	T	50832017	C	T	50832017	4	4	275	1	0	0	0	0	0	1	0	0	4313	876	31	1	2031	1	DCC	18	50832017	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2385164	50832017	27245231	4422	30109										
WDR7	0	genome.wustl.edu	37	chr18	54591305	54591305	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttctgatggggcttctcGaactttgtgccgatgccgag	13	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	54591305	54591305	G	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	nonsense	c.3679	p.E1227*	1.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	358	0	0	212	109	33.96	-	-	-	T	54591305	G	T	54591305	4	4	275	1	0	0	0	0	0	1	0	0	17417	1059	37	3	3761	3	WDR7	18	54591305	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3759288	54591305	23485943	4423	30110										
WDR7	0	genome.wustl.edu	37	chr18	54694261	54694261	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acgtcactgctgggaagcatCggcatgctgaactcggcacc	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	54694261	54694261	C	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	silent	c.4296	p.I1432	0.884	pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	49	0	0	20	6	23.08	-	-	-	T	54694261	C	T	54694261	2	4	275	1	0	0	0	0	0	0	0	1	17417	874	31	1		1	WDR7	18	54694261	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	102956	54694261	23382987	4424	30111										
ALPK2	0	genome.wustl.edu	37	chr18	56203433	56203433	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttggctgaaaccccgggaaGaaagacttctccaatgtaca	10	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	56203433	56203433	G	T	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.3986	p.S1329Y	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	242	0	0	128	54	29.67	-	-	-	T	56203433	G	T	56203433	3	4	275	1	0	0	0	0	1	0	0	0	545	942	33	2	2562	2	ALPK2	18	56203433	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1509172	56203433	21873815	4425	30112										
CDH20	0	genome.wustl.edu	37	chr18	59166487	59166487	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgggagaaggtgctggcatCgtgtttaccatcgacgacac	13	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	59166487	59166487	C	T	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	silent	c.315	p.I105	0.019	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	38	0	0	28	19	40.43	-	-	-	T	59166487	C	T	59166487	2	4	275	1	0	0	0	0	0	0	0	1	3135	874	31	1		1	CDH20	18	59166487	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2963054	59166487	18910761	4426	30113										
CDH20	0	genome.wustl.edu	37	chr18	59203763	59203763	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtgaccctggaagatttTtctatgttgacattacaaca	8	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	59203763	59203763	T	G	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.1309	p.F437V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	267	0	0	193	73	27.34	-	-	-	G	59203763	T	G	59203763	3	3	275	1	0	0	0	0	1	0	0	0	3135	1841	64	5	1335	5	CDH20	18	59203763	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	37276	59203763	18873485	4427	30114										
KIAA1468	0	genome.wustl.edu	37	chr18	59931995	59931995	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagaaatagttggcaaaatTaatgttacttcaactgcctg	7	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	59931995	59931995	T	G	SNP	KIAA1468	ENST00000588446	human	ensembl	69_37n	1	known	nonsense	c.239	p.L80*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1468	HGNC	ENSG00000134444	175	0	0	85	19	18.27	-	-	-	G	59931995	T	G	59931995	4	3	275	1	0	0	0	0	0	1	0	0	8288	1742	61	5	2611	5	KIAA1468	18	59931995	Nonsense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	728232	59931995	18145253	4428	30115										
KIAA1468	0	genome.wustl.edu	37	chr18	59941304	59941304	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgatagcctgaaggcttCttttgtggaattggggtaag	13	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	59941304	59941304	C	A	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	missense	c.2954	p.S985Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	375	0	0	194	45	18.83	-	-	-	A	59941304	C	A	59941304	3	1	275	1	0	0	0	0	1	0	0	0	8288	913	32	2	2934	2	KIAA1468	18	59941304	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	9309	59941304	18135944	4429	30116										
PHLPP1	0	genome.wustl.edu	37	chr18	60587216	60587216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttgtaatagcagtctccgGaaactactggcaggacacaa	9	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	60587216	60587216	G	A	SNP	PHLPP1	ENST00000591386	human	ensembl	69_37n	1	novel	missense	c.199	p.E67K	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_start_codon:pseudogene:no_stop_codon	PHLPP1	HGNC	ENSG00000081913	150	0	0	104	37	26.24	-	-	-	A	60587216	G	A	60587216	3	1	275	1	0	0	0	0	1	0	0	0	11928	1161	41	2	2867	2	PHLPP1	18	60587216	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	645912	60587216	17490032	4430	30117										
PHLPP1	0	genome.wustl.edu	37	chr18	60612478	60612478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcatcgaggtctttcccGaagttatgcagctcccagag	10	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	60612478	60612478	G	A	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	missense	c.3298	p.E1100K	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	133	0	0	109	16	12.8	-	-	-	A	60612478	G	A	60612478	3	1	275	1	0	0	0	0	1	0	0	0	11928	1059	37	1	3344	1	PHLPP1	18	60612478	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25262	60612478	17464770	4431	30118										
VPS4B	0	genome.wustl.edu	37	chr18	61078757	61078757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagagctgaagggcttcttCgtagttcccagccttgtctt	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61078757	61078757	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	1.000	pfam_MIT,smart_MIT	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	358	0	0	152	43	22.05	-	-	-	T	61078757	C	T	61078757	3	4	275	1	0	0	0	0	1	0	0	0	17310	893	31	1	1292	1	VPS4B	18	61078757	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	466279	61078757	16998491	4432	30119										
SERPINB4	0	genome.wustl.edu	37	chr18	61305018	61305018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttgccttatgaagaataGgaaagggtgattacaacaga	10	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61305018	61305018	G	T	SNP	SERPINB4	ENST00000341074	human	ensembl	69_37n	-1	known	missense	c.1108	p.L370I	0.993	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB4	HGNC	ENSG00000206073	412	0	0	239	36	13.09	-	-	-	T	61305018	G	T	61305018	3	4	275	1	0	0	0	0	1	0	0	0	14191	991	35	4	68	4	SERPINB4	18	61305018	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	226261	61305018	16772230	4433	30120										
SERPINB7	0	genome.wustl.edu	37	chr18	61463518	61463518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggactacattgagtgtgccGaaaaattatacgatgccaaa	9	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61463518	61463518	G	A	SNP	SERPINB7	ENST00000336429	human	ensembl	69_37n	1	known	missense	c.355	p.E119K	0.608	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396	204	0	0	131	54	29.19	-	-	-	A	61463518	G	A	61463518	3	1	275	1	0	0	0	0	1	0	0	0	14194	1059	37	1	369	1	SERPINB7	18	61463518	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	158500	61463518	16613730	4434	30121										
SERPINB7	0	genome.wustl.edu	37	chr18	61468152	61468152	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaacggaagttcaatttgtCtgttattgaggacccatcaa	10	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61468152	61468152	C	T	SNP	SERPINB7	ENST00000336429	human	ensembl	69_37n	1	known	missense	c.650	p.S217F	0.995	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396	189	0	0	104	38	26.76	-	-	-	T	61468152	C	T	61468152	3	4	275	1	0	0	0	0	1	0	0	0	14194	913	32	2	672	2	SERPINB7	18	61468152	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4634	61468152	16609096	4435	30122										
HMSD	0	genome.wustl.edu	37	chr18	61621721	61621721	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttcttgttgcaattaacaGaactgacactgaatatgtgc	7	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61621721	61621721	G	T	SNP	HMSD	ENST00000526932	human	ensembl	69_37n	1	known	nonsense	c.49	p.E17*	0.135	NULL	NULL	-	no_errors	HMSD	HGNC	ENSG00000221887	477	0	0	234	30	11.36	-	-	-	T	61621721	G	T	61621721	4	4	275	1	0	0	0	0	0	1	0	0	7297	942	33	2	158	2	HMSD	18	61621721	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	153569	61621721	16455527	4436	30123										
HMSD	0	genome.wustl.edu	37	chr18	61627536	61627536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatattgttattctatttcGataatattttaaacagtttt	3	3	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	61627536	61627536	G	A	SNP	HMSD	ENST00000408945	human	ensembl	69_37n	1	known	missense	c.367	p.D123N	0.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom	-	no_errors	HMSD	HGNC	ENSG00000221887	312	0	0	213	26	10.88	-	-	-	A	61627536	G	A	61627536	3	1	275	1	0	0	0	0	1	0	0	0	7297	1058	37	1	377	1	HMSD	18	61627536	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5815	61627536	16449712	4437	30124										
CDH7	0	genome.wustl.edu	37	chr18	63481748	63481748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtggtacaagtgacagcgaCggatgctgatgatcctacat	12	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	63481748	63481748	C	T	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	missense	c.533	p.T178M	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	304	0	0	146	68	31.78	-	-	-	T	63481748	C	T	63481748	3	4	275	1	0	0	0	0	1	0	0	0	3144	536	19	1	543	1	CDH7	18	63481748	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1854212	63481748	14595500	4438	30125										
CDH7	0	genome.wustl.edu	37	chr18	63489482	63489482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatccacctcgctttcctcGaagtaagttgttttcttaag	6	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	63489482	63489482	G	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	missense	c.791	p.R264Q	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	279	0	0	168	34	16.83	-	-	-	A	63489482	G	A	63489482	3	1	275	1	0	0	0	0	1	0	0	0	3144	1058	37	1	805	1	CDH7	18	63489482	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7734	63489482	14587766	4439	30126										
CDH19	0	genome.wustl.edu	37	chr18	64211348	64211348	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaacatcttccacctggatCttaatgaaagtggtggaagc	9	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	64211348	64211348	C	A	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	missense	c.1074	p.K358N	0.090	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	216	0	0	128	24	15.79	-	-	-	A	64211348	C	A	64211348	3	1	275	1	0	0	0	0	1	0	0	0	3133	912	32	2	1268	2	CDH19	18	64211348	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	721866	64211348	13865900	4440	30127										
DSEL	0	genome.wustl.edu	37	chr18	65178587	65178587	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatttggattttgataattCtttcctcaatggttcatact	6	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	65178587	65178587	C	A	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	nonsense	c.3289	p.E1097*	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	67	0	0	35	6	14.63	-	-	-	A	65178587	C	A	65178587	4	1	275	1	0	0	0	0	0	1	0	0	4810	922	32	2	383	2	DSEL	18	65178587	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	967239	65178587	12898661	4441	30128										
RTTN	0	genome.wustl.edu	37	chr18	67836265	67836265	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtccaaagaaaggagaaaTaatgctgttgacataggctc	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	67836265	67836265	T	G	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.1515	p.L505F	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	265	0	0	178	26	12.75	-	-	-	G	67836265	T	G	67836265	3	3	275	1	0	0	0	0	1	0	0	0	13823	1403	49	5	5317	5	RTTN	18	67836265	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2657678	67836265	10240983	4442	30129										
SOCS6	0	genome.wustl.edu	37	chr18	67992019	67992019	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagccagtgactttggaaaaGatgattccttatttggtagc	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	67992019	67992019	G	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.115	p.D39Y	1.000	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	213	0	0	110	23	17.29	-	-	-	T	67992019	G	T	67992019	3	4	275	1	0	0	0	0	1	0	0	0	15007	942	33	2	117	2	SOCS6	18	67992019	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155754	67992019	10085229	4443	30130										
FBXO15	0	genome.wustl.edu	37	chr18	71790623	71790623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctcttggtgaagagattgCgaaatgtaccacataggtag	11	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	71790623	71790623	C	T	SNP	FBXO15	ENST00000419743	human	ensembl	69_37n	-1	known	missense	c.1118	p.R373H	0.031	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO15	HGNC	ENSG00000141665	183	0	0	113	35	23.49	-	-	-	T	71790623	C	T	71790623	3	4	275	1	0	0	0	0	1	0	0	0	5774	768	27	1	426	1	FBXO15	18	71790623	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3798604	71790623	6286625	4444	30131										
CNDP2	0	genome.wustl.edu	37	chr18	72183517	72183517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctgtccctccatggcatcGaaggcgccttctctgggtct	10	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	72183517	72183517	G	A	SNP	CNDP2	ENST00000324262	human	ensembl	69_37n	1	known	missense	c.958	p.E320K	1.000	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313	122	0	0	62	7	10.14	-	-	-	A	72183517	G	A	72183517	3	1	275	1	0	0	0	0	1	0	0	0	3624	1059	37	1	988	1	CNDP2	18	72183517	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	392894	72183517	5893731	4445	30132										
CNDP1	0	genome.wustl.edu	37	chr18	72244174	72244174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagtggttcctcttacagaAgaggaaataaatacatacaa	8	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	72244174	72244174	A	C	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	missense	c.912	p.E304D	0.962	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	378	0	0	318	38	10.67	-	-	-	C	72244174	A	C	72244174	3	2	275	1	0	0	0	0	1	0	0	0	3623	69	3	5	942	5	CNDP1	18	72244174	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	60657	72244174	5833074	4446	30133										
CNDP1	0	genome.wustl.edu	37	chr18	72244217	72244217	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatccatctagacctagaaGaataccggaatagcagccgg	9	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	72244217	72244217	G	T	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	nonsense	c.955	p.E319*	0.820	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	315	0	0	220	42	16.03	-	-	-	T	72244217	G	T	72244217	4	4	275	1	0	0	0	0	0	1	0	0	3623	943	33	2	985	2	CNDP1	18	72244217	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43	72244217	5833031	4447	30134										
ZNF407	0	genome.wustl.edu	37	chr18	72515937	72515937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagtaaaggttgcatatcGaaagatcgggacgttgccag	13	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	72515937	72515937	G	A	SNP	ZNF407	ENST00000309902	human	ensembl	69_37n	1	known	missense	c.4895	p.R1632Q	0.000	NULL	smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	294	0	0	210	28	11.72	-	-	-	A	72515937	G	A	72515937	3	1	275	1	0	0	0	0	1	0	0	0	17983	1058	37	1	4909	1	ZNF407	18	72515937	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	271720	72515937	5561311	4448	30135										
ADNP2	0	genome.wustl.edu	37	chr18	77893626	77893626	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggtgatcccttgcccaaaCtgtgtatttgcatctcagcc	8	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	18	77893626	77893626	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	silent	c.330	p.N110	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	166	0	0	146	36	19.78	-	-	-	T	77893626	C	T	77893626	2	4	275	1	0	0	0	0	0	0	0	1	324	564	20	4		4	ADNP2	18	77893626	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5377689	77893626	183622	4449	30136										
MIER2	0	genome.wustl.edu	37	chr19	336128	336128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgggcacaggctgtgctCgaggcaggagaccacgcgag	16	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	336128	336128	C	T	SNP	MIER2	ENST00000264819	human	ensembl	69_37n	-1	known	missense	c.55	p.E19K	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556	35	0	0	33	4	10.81	-	-	-	T	336128	C	T	336128	3	4	275	1	0	0	0	0	1	0	0	0	9652	893	31	1	1634	1	MIER2	19	336128	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09		336128	58792855	4450	30137										
ABCA7	0	genome.wustl.edu	37	chr19	1058728	1058728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacactactgctgcagcaccGaagccaactcctgccacagt	7	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	1058728	1058728	G	A	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.5261	p.R1754Q	0.936	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	29	0	0	20	18	47.37	-	-	-	A	1058728	G	A	1058728	3	1	275	1	0	0	0	0	1	0	0	0	37	1058	37	1	5407	1	ABCA7	19	1058728	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	722600	1058728	58070255	4451	30138										
MUM1	0	genome.wustl.edu	37	chr19	1360195	1360195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcctacagacggtcgcttcGcgtggctctggacgttctga	14	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	1360195	1360195	G	A	SNP	MUM1	ENST00000344663	human	ensembl	69_37n	1	known	missense	c.278	p.R93H	0.011	NULL	pfam_PWWP	-	no_errors	MUM1	HGNC	ENSG00000160953	64	0	0	46	8	14.81	-	-	-	A	1360195	G	A	1360195	3	1	275	1	0	0	0	0	1	0	0	0	10057	1087	38	1	292	1	MUM1	19	1360195	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	301467	1360195	57768788	4452	30139										
ZNF555	0	genome.wustl.edu	37	chr19	2852747	2852747	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacactgctgagaaaacctaCgaatgtaagcaatgtgggaa	10	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	2852747	2852747	C	T	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	1	known	silent	c.684	p.Y228	0.024	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	78	0	0	61	26	29.89	-	-	-	T	2852747	C	T	2852747	2	4	275	1	0	0	0	0	0	0	0	1	18082	547	19	1		1	ZNF555	19	2852747	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1492552	2852747	56276236	4453	30140										
ZNF57	0	genome.wustl.edu	37	chr19	2917350	2917350	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcttcactagacatgtgaGaactcacacaaaagacaggc	8	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	2917350	2917350	G	T	SNP	ZNF57	ENST00000306908	human	ensembl	69_37n	1	known	missense	c.731	p.R244I	0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970	147	0	0	100	42	29.58	-	-	-	T	2917350	G	T	2917350	3	4	275	1	0	0	0	0	1	0	0	0	18097	942	33	2	745	2	ZNF57	19	2917350	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	64603	2917350	56211633	4454	30141										
TLE6	0	genome.wustl.edu	37	chr19	2980133	2980133	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgaactctgagagctctccGacgctgaattatcagggcat	10	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	2980133	2980133	G	A	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	silent	c.87	p.P29	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	73	0	0	42	14	24.56	-	-	-	A	2980133	G	A	2980133	2	1	275	1	0	0	0	0	0	0	0	1	16037	1045	37	1		1	TLE6	19	2980133	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	62783	2980133	56148850	4455	30142										
GNA11	0	genome.wustl.edu	37	chr19	3119348	3119348	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggtggactacttccccGagttcgatggtgcgccgggc	14	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	3119348	3119348	G	T	SNP	GNA11	ENST00000078429	human	ensembl	69_37n	1	known	nonsense	c.880	p.E294*	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_GproteinA	-	no_errors	GNA11	HGNC	ENSG00000088256	42	0	0	13	7	35	-	-	-	T	3119348	G	T	3119348	4	4	275	1	0	0	0	0	0	1	0	0	6551	1059	37	3	902	3	GNA11	19	3119348	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	139215	3119348	56009635	4456	30143										
CREB3L3	0	genome.wustl.edu	37	chr19	4157082	4157082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctccccactctggtcccccGaaggcagtgatagtggcatc	11	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	4157082	4157082	G	A	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.247	p.E83K	0.008	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	40	0	0	35	10	22.22	-	-	-	A	4157082	G	A	4157082	3	1	275	1	0	0	0	0	1	0	0	0	3888	1059	37	1	257	1	CREB3L3	19	4157082	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1037734	4157082	54971901	4457	30144										
CREB3L3	0	genome.wustl.edu	37	chr19	4168368	4168368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgaggagcgagtgctgaaAaaaatccgccggaaaatccg	12	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	4168368	4168368	A	C	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.735	p.K245N	1.000	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	110	0	0	53	32	37.65	-	-	-	C	4168368	A	C	4168368	3	2	275	1	0	0	0	0	1	0	0	0	3888	11	1	5	757	5	CREB3L3	19	4168368	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	11286	4168368	54960615	4458	30145										
ANKRD24	0	genome.wustl.edu	37	chr19	4207815	4207815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgtgagggggccagccccGaaacagtggaggtcctgctg	16	12	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	4207815	4207815	G	A	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	1	known	missense	c.952	p.E318K	0.996	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	83	0	0	45	10	18.18	-	-	-	A	4207815	G	A	4207815	3	1	275	1	0	0	0	0	1	0	0	0	653	1059	37	1	716	1	ANKRD24	19	4207815	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39447	4207815	54921168	4459	30146										
SH3GL1	0	genome.wustl.edu	37	chr19	4365582	4365582	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttcacctggccccggatCttggacaccgtgttgagcat	10	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	4365582	4365582	C	A	SNP	SH3GL1	ENST00000269886	human	ensembl	69_37n	-1	known	missense	c.228	p.K76N	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,prints_SH3_domain,prints_p67phox,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GL1	HGNC	ENSG00000141985	50	0	0	15	4	21.05	-	-	-	A	4365582	C	A	4365582	3	1	275	1	0	0	0	0	1	0	0	0	14339	912	32	2	906	2	SH3GL1	19	4365582	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	157767	4365582	54763401	4460	30147										
KDM4B	0	genome.wustl.edu	37	chr19	5041185	5041185	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaggactttgatgaccttGaacgcaaatactggaagaac	9	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	5041185	5041185	G	T	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	nonsense	c.355	p.E119*	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	27	0	0	24	9	27.27	-	-	-	T	5041185	G	T	5041185	4	4	275	1	0	0	0	0	0	1	0	0	8183	1291	45	2	365	2	KDM4B	19	5041185	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	675603	5041185	54087798	4461	30148										
ACSBG2	0	genome.wustl.edu	37	chr19	6183142	6183142	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttggatcactgtcactcttTtatcagtgggactgcgcccc	9	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6183142	6183142	T	G	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1181	p.F394C	0.109	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	110	0	0	114	26	18.57	-	-	-	G	6183142	T	G	6183142	3	3	275	1	0	0	0	0	1	0	0	0	174	1841	64	5	1215	5	ACSBG2	19	6183142	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1141957	6183142	52945841	4462	30149										
ACSBG2	0	genome.wustl.edu	37	chr19	6183180	6183180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctcaaccaagagactgccGagttctttctaagcttggac	8	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6183180	6183180	G	A	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1219	p.E407K	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	128	0	0	126	20	13.61	-	-	-	A	6183180	G	A	6183180	3	1	275	1	0	0	0	0	1	0	0	0	174	1059	37	1	1253	1	ACSBG2	19	6183180	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38	6183180	52945803	4463	30150										
ACSBG2	0	genome.wustl.edu	37	chr19	6187351	6187351	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattcctgttgagaccttggTtaagaagaagatccccatca	8	10	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6187351	6187351	T	C	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1598	p.V533A	0.967	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	118	0	0	124	16	11.43	-	-	-	C	6187351	T	C	6187351	3	2	275	1	0	0	0	0	1	0	0	0	174	1725	60	5	1640	5	ACSBG2	19	6187351	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4171	6187351	52941632	4464	30151										
ACSBG2	0	genome.wustl.edu	37	chr19	6187618	6187618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctgggggcagtgtgagatGaatcagatgagcggagaacc	17	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6187618	6187618	G	A	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1689	p.M563I	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	228	0	0	203	25	10.96	-	-	-	A	6187618	G	A	6187618	3	1	275	1	0	0	0	0	1	0	0	0	174	1290	45	2	1735	2	ACSBG2	19	6187618	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	267	6187618	52941365	4465	30152										
GTF2F1	0	genome.wustl.edu	37	chr19	6381746	6381746	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtccacctcttggccctcGaagtccccatcatcgctgtc	7	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6381746	6381746	G	A	SNP	GTF2F1	ENST00000394456	human	ensembl	69_37n	-1	known	silent	c.798	p.F266	0.212	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651	98	0	0	43	18	29.51	-	-	-	A	6381746	G	A	6381746	2	1	275	1	0	0	0	0	0	0	0	1	6909	1049	37	1		1	GTF2F1	19	6381746	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	194128	6381746	52747237	4466	30153										
GTF2F1	0	genome.wustl.edu	37	chr19	6381781	6381781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgtcctcgaaggcctcgtCgtctgaacccttcttcttct	8	15	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6381781	6381781	C	T	SNP	GTF2F1	ENST00000394456	human	ensembl	69_37n	-1	known	missense	c.763	p.D255N	0.775	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651	84	0	0	39	10	20.41	-	-	-	T	6381781	C	T	6381781	3	4	275	1	0	0	0	0	1	0	0	0	6909	884	31	1	818	1	GTF2F1	19	6381781	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35	6381781	52747202	4467	30154										
DENND1C	0	genome.wustl.edu	37	chr19	6468041	6468041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctggtggcatccaaagacGaggcattttgcagggatggc	15	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6468041	6468041	G	A	SNP	DENND1C	ENST00000381480	human	ensembl	69_37n	-1	known	missense	c.1880	p.S627L	0.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744	141	0	0	66	21	24.14	-	-	-	A	6468041	G	A	6468041	3	1	275	1	0	0	0	0	1	0	0	0	4464	1059	37	1	529	1	DENND1C	19	6468041	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	86260	6468041	52660942	4468	30155										
C3	0	genome.wustl.edu	37	chr19	6680217	6680217	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctccaggctggataagctCtacattaaagtattggtgaa	10	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6680217	6680217	C	T	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.4408	p.E1470K	0.986	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	92	0	0	67	24	26.37	-	-	-	T	6680217	C	T	6680217	3	4	275	1	0	0	0	0	1	0	0	0	2224	922	32	2	607	2	C3	19	6680217	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	212176	6680217	52448766	4469	30156										
EMR1	0	genome.wustl.edu	37	chr19	6908700	6908700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttttttctgggacgcagGtctccttttgtgcacaaata	8	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6908700	6908700	G	T	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	missense	c.1039	p.V347F	0.017	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	482	0	0	297	83	21.84	-	-	-	T	6908700	G	T	6908700	3	4	275	1	0	0	0	0	1	0	0	0	5141	1275	44	4	1077	4	EMR1	19	6908700	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	228483	6908700	52220283	4470	30157										
EMR1	0	genome.wustl.edu	37	chr19	6913826	6913826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaatatcactccggctgttCggacggaatacttaggtagg	11	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	6913826	6913826	C	T	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	missense	c.1285	p.R429W	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	113	0	0	101	17	14.29	-	-	-	T	6913826	C	T	6913826	3	4	275	1	0	0	0	0	1	0	0	0	5141	875	31	1	1327	1	EMR1	19	6913826	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5126	6913826	52215157	4471	30158										
INSR	0	genome.wustl.edu	37	chr19	7172401	7172401	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttagataccctgaaatttCttcaatgaggccgaggttgg	10	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	7172401	7172401	C	A	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	nonsense	c.1168	p.E390*	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	327	0	0	238	33	12.18	-	-	-	A	7172401	C	A	7172401	4	1	275	1	0	0	0	0	0	1	0	0	7827	922	32	2	3052	2	INSR	19	7172401	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	258575	7172401	51956582	4472	30159										
CLEC4M	0	genome.wustl.edu	37	chr19	7833813	7833813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtggctggaacgacaatcGatgtgacgttgacaattact	11	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	7833813	7833813	G	A	SNP	CLEC4M	ENST00000327325	human	ensembl	69_37n	1	known	missense	c.1139	p.R380Q	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4M	HGNC	ENSG00000104938	223	0	0	195	32	14.1	-	-	-	A	7833813	G	A	7833813	3	1	275	1	0	0	0	0	1	0	0	0	3548	1058	37	1	1186	1	CLEC4M	19	7833813	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	661412	7833813	51295170	4473	30160										
ELAVL1	0	genome.wustl.edu	37	chr19	8056636	8056636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggaggtagttgacgatcaAattcgttctcccgatgtcac	11	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	8056636	8056636	A	C	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	missense	c.145	p.L49V	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	344	0	0	221	78	26.09	-	-	-	C	8056636	A	C	8056636	3	2	275	1	0	0	0	0	1	0	0	0	5086	11	1	5	936	5	ELAVL1	19	8056636	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	222823	8056636	51072347	4474	30161										
KANK3	0	genome.wustl.edu	37	chr19	8389618	8389618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcgctgtggccccatccgCatcctgcgcattcacatcag	9	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	8389618	8389618	C	T	SNP	KANK3	ENST00000330915	human	ensembl	69_37n	-1	known	missense	c.2179	p.A727T	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	28	0	0	18	6	25	-	-	-	T	8389618	C	T	8389618	3	4	275	1	0	0	0	0	1	0	0	0	8032	710	25	4	298	4	KANK3	19	8389618	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	332982	8389618	50739365	4475	30162										
RAB11B	0	genome.wustl.edu	37	chr19	8464850	8464850	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaccatcggcgtggagttCgccacccgcagcatccaggt	12	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	8464850	8464850	C	T	SNP	RAB11B	ENST00000328024	human	ensembl	69_37n	1	known	silent	c.144	p.F48	0.883	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11B	HGNC	ENSG00000185236	151	0	0	79	41	33.88	-	-	-	T	8464850	C	T	8464850	2	4	275	1	0	0	0	0	0	0	0	1	12975	883	31	1		1	RAB11B	19	8464850	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	75232	8464850	50664133	4476	30163										
HNRNPM	0	genome.wustl.edu	37	chr19	8531218	8531218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagataaagatggaaaaagtCgtggaataggcactgttact	11	4	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	8531218	8531218	C	T	SNP	HNRNPM	ENST00000325495	human	ensembl	69_37n	1	known	missense	c.730	p.R244C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783	246	0	0	254	39	13.31	-	-	-	T	8531218	C	T	8531218	3	4	275	1	0	0	0	0	1	0	0	0	7322	884	31	1	756	1	HNRNPM	19	8531218	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	66368	8531218	50597765	4477	30164										
ADAMTS10	0	genome.wustl.edu	37	chr19	8656866	8656866	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctgtcgcagtgacggctaGaagaggacacgccgccgcca	15	13	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	8656866	8656866	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	69_37n	-1	known	missense	c.1709	p.S570F	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303	35	0	0	11	5	31.25	-	-	-	A	8656866	G	A	8656866	3	1	275	1	0	0	0	0	1	0	0	0	256	942	33	2	1654	2	ADAMTS10	19	8656866	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	125648	8656866	50472117	4478	30165										
MUC16	0	genome.wustl.edu	37	chr19	9005206	9005206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atactcactgctggtggtggGcacagagctccgctgggtga	15	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9005206	9005206	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.39871	p.P13291S	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	923	0	0	1173	178	13.12	-	-	-	A	9005206	G	A	9005206	3	1	275	1	0	0	0	0	1	0	0	0	10045	1203	42	4	3804	4	MUC16	19	9005206	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	348340	9005206	50123777	4479	30166										
MUC16	0	genome.wustl.edu	37	chr19	9056956	9056956	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctaaatccagaagtcaaatGagaaaatggctcagcctcaa	7	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9056956	9056956	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.30490	p.H10164N	0.004	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	213	1	0.47	201	38	15.9	-	-	-	T	9056956	G	T	9056956	3	4	275	1	0	0	0	0	1	0	0	0	10045	1290	45	2	13361	2	MUC16	19	9056956	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	51750	9056956	50072027	4480	30167										
MUC16	0	genome.wustl.edu	37	chr19	9060370	9060370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcgtggcactagtgagtgCcttgtaaggaacagtgcttg	13	7	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9060370	9060370	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.27076	p.A9026T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	351	0	0	434	79	15.4	-	-	-	T	9060370	C	T	9060370	3	4	275	1	0	0	0	0	1	0	0	0	10045	739	26	4	16775	4	MUC16	19	9060370	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3414	9060370	50068613	4481	30168										
MUC16	0	genome.wustl.edu	37	chr19	9062816	9062816	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagtatgagtactctctggTgtagacccaggaggatctgt	12	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9062816	9062816	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.24630	p.T8210	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	320	0	0	359	119	24.9	-	-	-	C	9062816	T	C	9062816	2	2	275	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9062816	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2446	9062816	50066167	4482	30169										
MUC16	0	genome.wustl.edu	37	chr19	9067087	9067087	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggattgtccatgatagaaTctcagggtccttgttcatga	11	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9067087	9067087	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.20359	p.I6787L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	621	1	0.16	612	233	27.54	-	-	-	G	9067087	T	G	9067087	3	3	275	1	0	0	0	0	1	0	0	0	10045	1435	50	5	23492	5	MUC16	19	9067087	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4271	9067087	50061896	4483	30170										
MUC16	0	genome.wustl.edu	37	chr19	9070245	9070245	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaatcagctgggacagaaGattgtgattcatgtccagaa	12	6	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9070245	9070245	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.17201	p.S5734Y	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	540	0	0	629	90	12.52	-	-	-	T	9070245	G	T	9070245	3	4	275	1	0	0	0	0	1	0	0	0	10045	942	33	2	26650	2	MUC16	19	9070245	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3158	9070245	50058738	4484	30171										
MUC16	0	genome.wustl.edu	37	chr19	9077623	9077623	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctgtagccaacatattttCtgttggtgacttggttggtg	11	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9077623	9077623	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	nonsense	c.9823	p.E3275*	0.008	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	380	0	0	305	56	15.51	-	-	-	A	9077623	C	A	9077623	4	1	275	1	0	0	0	0	0	1	0	0	10045	922	32	2	34028	2	MUC16	19	9077623	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7378	9077623	50051360	4485	30172										
MUC16	0	genome.wustl.edu	37	chr19	9087801	9087801	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcactgagtggggtgtagaGacctgagctgaacttgtatc	13	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9087801	9087801	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.4014	p.V1338	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	1190	1	0.08	916	176	16.12	-	-	-	T	9087801	G	T	9087801	2	4	275	1	0	0	0	0	0	0	0	1	10045	929	33	2		2	MUC16	19	9087801	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10178	9087801	50041182	4486	30173										
MUC16	0	genome.wustl.edu	37	chr19	9090527	9090527	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatgtattcaaagttccttCtgtttcctttccactcgtgg	7	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9090527	9090527	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	nonsense	c.1288	p.E430*	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	770	0	0	487	142	22.54	-	-	-	A	9090527	C	A	9090527	4	1	275	1	0	0	0	0	0	1	0	0	10045	922	32	2	42571	2	MUC16	19	9090527	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2726	9090527	50038456	4487	30174										
OR7G3	0	genome.wustl.edu	37	chr19	9237504	9237504	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccaggatgatgagcaggttCcccagcattgtggccaggta	14	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9237504	9237504	C	T	SNP	OR7G3	ENST00000305444	human	ensembl	69_37n	-1	known	silent	c.123	p.G41	0.158	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G3	HGNC	ENSG00000170920	282	1	0.35	219	101	31.46	-	-	-	T	9237504	C	T	9237504	2	4	275	1	0	0	0	0	0	0	0	1	11297	842	30	2		2	OR7G3	19	9237504	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	146977	9237504	49891479	4488	30175										
ZNF317	0	genome.wustl.edu	37	chr19	9271604	9271604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtgcgggaagaccttccGaaaccagtccatccttaaga	10	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9271604	9271604	G	A	SNP	ZNF317	ENST00000247956	human	ensembl	69_37n	1	known	missense	c.1283	p.R428Q	0.015	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	261	1	0.38	135	64	31.84	-	-	-	A	9271604	G	A	9271604	3	1	275	1	0	0	0	0	1	0	0	0	17931	1058	37	1	1305	1	ZNF317	19	9271604	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	34100	9271604	49857379	4489	30176										
ZNF177	0	genome.wustl.edu	37	chr19	9492173	9492173	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttaagaaacacacacgctCtcacactggagagaagcctt	7	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9492173	9492173	C	T	SNP	ZNF177	ENST00000434737	human	ensembl	69_37n	1	known	missense	c.1166	p.S389F	0.308	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629	244	0	0	167	25	13.02	-	-	-	T	9492173	C	T	9492173	3	4	275	1	0	0	0	0	1	0	0	0	17842	913	32	2	1184	2	ZNF177	19	9492173	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	220569	9492173	49636810	4490	30177										
ZNF177	0	genome.wustl.edu	37	chr19	9492219	9492219	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtaaccagtgtggaaagtcCttcagcacaggctcttacct	9	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9492219	9492219	C	A	SNP	ZNF177	ENST00000434737	human	ensembl	69_37n	1	known	silent	c.1212	p.S404	0.322	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629	256	0	0	147	47	24.23	-	-	-	A	9492219	C	A	9492219	2	1	275	1	0	0	0	0	0	0	0	1	17842	668	24	4		4	ZNF177	19	9492219	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46	9492219	49636764	4491	30178										
ZNF560	0	genome.wustl.edu	37	chr19	9577982	9577982	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaaagctttaccacatttCttacattgatagagtctctc	6	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9577982	9577982	C	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.1641	p.K547N	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	108	0	0	86	18	17.31	-	-	-	A	9577982	C	A	9577982	3	1	275	1	0	0	0	0	1	0	0	0	18087	912	32	2	735	2	ZNF560	19	9577982	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85763	9577982	49551001	4492	30179										
ZNF560	0	genome.wustl.edu	37	chr19	9579823	9579823	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttaaacaaaaattatcttgCcaaagggctggccctttggt	8	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9579823	9579823	C	T	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	nonsense	c.570	p.W190*	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	86	0	0	59	31	34.44	-	-	-	T	9579823	C	T	9579823	4	4	275	1	0	0	0	0	0	1	0	0	18087	740	26	4	1810	4	ZNF560	19	9579823	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1841	9579823	49549160	4493	30180										
ZNF561	0	genome.wustl.edu	37	chr19	9721015	9721015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctccggtatgagttCgcaggtgaacattaaggcgt	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9721015	9721015	C	T	SNP	ZNF561	ENST00000302851	human	ensembl	69_37n	-1	known	missense	c.1322	p.R441Q	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF561	HGNC	ENSG00000171469	450	0	0	361	113	23.69	-	-	-	T	9721015	C	T	9721015	3	4	275	1	0	0	0	0	1	0	0	0	18088	884	31	1	142	1	ZNF561	19	9721015	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	141192	9721015	49407968	4494	30181										
ZNF562	0	genome.wustl.edu	37	chr19	9764425	9764425	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtgcacactgatgctgtCttttccataacaattaccct	5	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9764425	9764425	C	A	SNP	ZNF562	ENST00000448622	human	ensembl	69_37n	-1	known	missense	c.481	p.D161Y	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466	423	0	0	305	106	25.73	-	-	-	A	9764425	C	A	9764425	3	1	275	1	0	0	0	0	1	0	0	0	18089	913	32	2	803	2	ZNF562	19	9764425	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43410	9764425	49364558	4495	30182										
ZNF846	0	genome.wustl.edu	37	chr19	9873999	9873999	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttctccaacatcacatctCtgtagagatctctctgggct	7	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9873999	9873999	C	A	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.101	p.R34I	0.998	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	229	0	0	233	33	12.41	-	-	-	A	9873999	C	A	9873999	3	1	275	1	0	0	0	0	1	0	0	0	18285	913	32	2	1516	2	ZNF846	19	9873999	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	109574	9873999	49254984	4496	30183										
ZNF846	0	genome.wustl.edu	37	chr19	9874024	9874024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagatctctctgggcttgatCcaacaaagtccactcctcct	7	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	9874024	9874024	C	T	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.76	p.D26N	0.144	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	218	0	0	224	37	14.18	-	-	-	T	9874024	C	T	9874024	3	4	275	1	0	0	0	0	1	0	0	0	18285	855	30	2	1541	2	ZNF846	19	9874024	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	25	9874024	49254959	4497	30184										
COL5A3	0	genome.wustl.edu	37	chr19	10071216	10071216	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaattcgaaaagggtcttCgtctgtcctttccggagctg	11	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	10071216	10071216	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	silent	c.5109	p.T1703	0.957	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	354	2	0.56	286	47	14.11	-	-	-	T	10071216	C	T	10071216	2	4	275	1	0	0	0	0	0	0	0	1	3728	871	31	1		1	COL5A3	19	10071216	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	197192	10071216	49057767	4498	30185										
DNMT1	0	genome.wustl.edu	37	chr19	10257157	10257157	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccaggaccctggggatttCtttttgcctcatctcagcca	8	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	10257157	10257157	C	A	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	nonsense	c.2764	p.E922*	0.996	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	56	0	0	24	4	14.29	-	-	-	A	10257157	C	A	10257157	4	1	275	1	0	0	0	0	0	1	0	0	4710	922	32	2	2190	2	DNMT1	19	10257157	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	185941	10257157	48871826	4499	30186										
KEAP1	0	genome.wustl.edu	37	chr19	10610217	10610217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaggcacggacaacgctgtCgatctggtacatgacagcac	12	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	10610217	10610217	C	T	SNP	KEAP1	ENST00000171111	human	ensembl	69_37n	-1	known	missense	c.493	p.D165N	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	92	0	0	50	6	10.71	-	-	-	T	10610217	C	T	10610217	3	4	275	1	0	0	0	0	1	0	0	0	8194	884	31	1	1401	1	KEAP1	19	10610217	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	353060	10610217	48518766	4500	30187										
ILF3	0	genome.wustl.edu	37	chr19	10793296	10793296	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggctgaggagaccgaggcGaagccagcagtggtggcccc	17	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	10793296	10793296	G	A	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	silent	c.1464	p.A488	0.139	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	49	0	0	12	5	29.41	-	-	-	A	10793296	G	A	10793296	2	1	275	1	0	0	0	0	0	0	0	1	7766	1045	37	1		1	ILF3	19	10793296	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	183079	10793296	48335687	4501	30188										
CARM1	0	genome.wustl.edu	37	chr19	11015739	11015739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagcgtcctcatccagttCgccacacccaacggtacgtg	8	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11015739	11015739	C	T	SNP	CARM1	ENST00000586221	human	ensembl	69_37n	1	known	missense	c.208	p.R70C	0.995	pfam_Histone-Arg_MeTrfase_N	pfam_Histone-Arg_MeTrfase_N,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_Arg_MeTrfase,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CARM1	HGNC	ENSG00000142453	77	0	0	47	10	17.54	-	-	-	T	11015739	C	T	11015739	3	4	275	1	0	0	0	0	1	0	0	0	2680	883	31	1	339	1	CARM1	19	11015739	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	222443	11015739	48113244	4502	30189										
DOCK6	0	genome.wustl.edu	37	chr19	11356497	11356497	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggcctcctaccttctttttCtcccgcacatcatacagagc	6	16	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11356497	11356497	C	A	SNP	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	missense	c.864	p.E288D	0.998	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	165	0	0	73	15	17.05	-	-	-	A	11356497	C	A	11356497	3	1	275	1	0	0	0	0	1	0	0	0	4726	912	32	2	5443	2	DOCK6	19	11356497	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	340758	11356497	47772486	4503	30190										
TSPAN16	0	genome.wustl.edu	37	chr19	11417252	11417252	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattatttgaaagggactCtccaagtatttcttctcctc	5	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11417252	11417252	C	A	SNP	TSPAN16	ENST00000337994	human	ensembl	69_37n	1	known	silent	c.456	p.L152	0.000	NULL	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	TSPAN16	HGNC	ENSG00000130167	121	0	0	154	30	16.3	-	-	-	A	11417252	C	A	11417252	2	1	275	1	0	0	0	0	0	0	0	1	16736	928	32	2		2	TSPAN16	19	11417252	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60755	11417252	47711731	4504	30191										
RAB3D	0	genome.wustl.edu	37	chr19	11436206	11436206	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgacatccaccaggcgctcGaagacctgcttcacattgat	8	13	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11436206	11436206	G	A	SNP	RAB3D	ENST00000222120	human	ensembl	69_37n	-1	known	silent	c.528	p.F176	0.975	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3D	HGNC	ENSG00000105514	121	0	0	98	15	13.16	-	-	-	A	11436206	G	A	11436206	2	1	275	1	0	0	0	0	0	0	0	1	13017	1049	37	1		1	RAB3D	19	11436206	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18954	11436206	47692777	4505	30192										
ZNF823	0	genome.wustl.edu	37	chr19	11833306	11833306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtgagtagtttcatgatttCgaactgaactaggacaatca	9	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11833306	11833306	C	T	SNP	ZNF823	ENST00000341191	human	ensembl	69_37n	-1	known	missense	c.1043	p.R348Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933	185	0	0	126	55	30.39	-	-	-	T	11833306	C	T	11833306	3	4	275	1	0	0	0	0	1	0	0	0	18272	884	31	1	793	1	ZNF823	19	11833306	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	397100	11833306	47295677	4506	30193										
ZNF823	0	genome.wustl.edu	37	chr19	11834079	11834079	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatttactcgaggagtgttCttgttcacaatactatctgg	10	7	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11834079	11834079	C	A	SNP	ZNF823	ENST00000341191	human	ensembl	69_37n	-1	known	missense	c.270	p.K90N	0.411	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933	141	0	0	156	24	13.33	-	-	-	A	11834079	C	A	11834079	3	1	275	1	0	0	0	0	1	0	0	0	18272	912	32	2	1566	2	ZNF823	19	11834079	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	773	11834079	47294904	4507	30194										
ZNF441	0	genome.wustl.edu	37	chr19	11891610	11891610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctttctcccagttcagttcGaagacataaaagaactcaca	5	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11891610	11891610	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.971	p.R324Q	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	104	0	0	103	44	29.93	-	-	-	A	11891610	G	A	11891610	3	1	275	1	0	0	0	0	1	0	0	0	18010	1058	37	1	985	1	ZNF441	19	11891610	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57531	11891610	47237373	4508	30195										
ZNF441	0	genome.wustl.edu	37	chr19	11891859	11891859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagtgatttctattactttcGaaatcatgaaactactcaca	4	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11891859	11891859	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.1220	p.R407Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	88	0	0	73	11	13.1	-	-	-	A	11891859	G	A	11891859	3	1	275	1	0	0	0	0	1	0	0	0	18010	1058	37	1	1234	1	ZNF441	19	11891859	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	249	11891859	47237124	4509	30196										
ZNF441	0	genome.wustl.edu	37	chr19	11892668	11892668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctataagtgtaaagaatgtGgggaagcatttcattgtatc	10	5	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11892668	11892668	G	T	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.2029	p.G677W	0.902	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	129	0	0	161	21	11.54	-	-	-	T	11892668	G	T	11892668	3	4	275	1	0	0	0	0	1	0	0	0	18010	1348	47	4	2043	4	ZNF441	19	11892668	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	809	11892668	47236315	4510	30197										
ZNF491	0	genome.wustl.edu	37	chr19	11917291	11917291	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagttggcacagttctgttCgaatccatgaaagaactcac	8	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11917291	11917291	C	T	SNP	ZNF491	ENST00000323169	human	ensembl	69_37n	1	known	nonsense	c.523	p.R175*	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC	ENSG00000177599	108	0	0	98	31	23.85	-	-	-	T	11917291	C	T	11917291	4	4	275	1	0	0	0	0	0	1	0	0	18038	876	31	1	525	1	ZNF491	19	11917291	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24623	11917291	47211692	4511	30198										
ZNF491	0	genome.wustl.edu	37	chr19	11917795	11917795	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagatctgccaagtacattCgaatacatggaaggactcac	8	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11917795	11917795	C	T	SNP	ZNF491	ENST00000323169	human	ensembl	69_37n	1	known	nonsense	c.1027	p.R343*	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC	ENSG00000177599	95	0	0	87	21	19.44	-	-	-	T	11917795	C	T	11917795	4	4	275	1	0	0	0	0	0	1	0	0	18038	876	31	1	1029	1	ZNF491	19	11917795	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	504	11917795	47211188	4512	30199										
ZNF440	0	genome.wustl.edu	37	chr19	11942305	11942305	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttctcctgaagtaaaatCatgtgaaagctttgtgtgtg	10	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11942305	11942305	C	A	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	1	known	nonsense	c.314	p.S105*	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	220	0	0	203	31	13.25	-	-	-	A	11942305	C	A	11942305	4	1	275	1	0	0	0	0	0	1	0	0	18009	838	29	2	328	2	ZNF440	19	11942305	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24510	11942305	47186678	4513	30200										
ZNF439	0	genome.wustl.edu	37	chr19	11978585	11978585	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttatatcttatccatgaaaGaactcacactggagagaaac	6	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	11978585	11978585	G	T	SNP	ZNF439	ENST00000304030	human	ensembl	69_37n	1	known	missense	c.701	p.R234I	0.705	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291	109	0	0	116	41	26.11	-	-	-	T	11978585	G	T	11978585	3	4	275	1	0	0	0	0	1	0	0	0	18007	942	33	2	711	2	ZNF439	19	11978585	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36280	11978585	47150398	4514	30201										
ZNF433	0	genome.wustl.edu	37	chr19	12126777	12126777	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttctcccccgtgtgagttCtttcatgtatttgaaaggaa	9	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12126777	12126777	C	A	SNP	ZNF433	ENST00000344980	human	ensembl	69_37n	-1	known	missense	c.905	p.R302I	0.654	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647	98	0	0	90	15	14.29	-	-	-	A	12126777	C	A	12126777	3	1	275	1	0	0	0	0	1	0	0	0	18003	913	32	2	1120	2	ZNF433	19	12126777	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148192	12126777	47002206	4515	30202										
ZNF878	0	genome.wustl.edu	37	chr19	12154972	12154972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctcctgtgtgagttCgtatgtgcttttgaaggact	11	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12154972	12154972	C	T	SNP	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	missense	c.1244	p.R415Q	0.041	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	94	0	0	88	31	26.05	-	-	-	T	12154972	C	T	12154972	3	4	275	1	0	0	0	0	1	0	0	0	18289	884	31	1	355	1	ZNF878	19	12154972	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28195	12154972	46974011	4516	30203										
ZNF844	0	genome.wustl.edu	37	chr19	12187719	12187719	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagagtgtgacaaagcattCatatctgccaagatccttcg	8	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12187719	12187719	C	T	SNP	ZNF844	ENST00000439326	human	ensembl	69_37n	1	known	missense	c.1784	p.S595L	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547	205	1	0.49	153	48	23.76	-	-	-	T	12187719	C	T	12187719	3	4	275	1	0	0	0	0	1	0	0	0	18283	838	29	2	1798	2	ZNF844	19	12187719	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32747	12187719	46941264	4517	30204										
ZNF563	0	genome.wustl.edu	37	chr19	12433451	12433451	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcacatatctgtataaattCttctgtgatggacccagcaa	6	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12433451	12433451	C	A	SNP	ZNF563	ENST00000293725	human	ensembl	69_37n	-1	known	missense	c.78	p.K26N	0.494	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868	128	0	0	116	22	15.94	-	-	-	A	12433451	C	A	12433451	3	1	275	1	0	0	0	0	1	0	0	0	18090	912	32	2	1364	2	ZNF563	19	12433451	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	245732	12433451	46695532	4518	30205										
ZNF442	0	genome.wustl.edu	37	chr19	12461474	12461474	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgagttctttcatgtattcGaagggaactggaaacactga	11	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12461474	12461474	G	A	SNP	ZNF442	ENST00000242804	human	ensembl	69_37n	-1	known	nonsense	c.925	p.R309*	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342	355	0	0	184	83	30.97	-	-	-	A	12461474	G	A	12461474	4	1	275	1	0	0	0	0	0	1	0	0	18011	1066	37	1	962	1	ZNF442	19	12461474	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28023	12461474	46667509	4519	30206										
ZNF799	0	genome.wustl.edu	37	chr19	12501902	12501902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgagttgtttcatgccttCgaagagaactggaaatacgg	11	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12501902	12501902	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	missense	c.1310	p.R437Q	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	322	1	0.31	248	39	13.59	-	-	-	T	12501902	C	T	12501902	3	4	275	1	0	0	0	0	1	0	0	0	18259	884	31	1	625	1	ZNF799	19	12501902	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40428	12501902	46627081	4520	30207										
ZNF799	0	genome.wustl.edu	37	chr19	12501958	12501958	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtttacatttatagggtttCtctgcagtgtgagtcttttc	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12501958	12501958	C	A	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	missense	c.1254	p.E418D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	362	0	0	281	38	11.88	-	-	-	A	12501958	C	A	12501958	3	1	275	1	0	0	0	0	1	0	0	0	18259	912	32	2	681	2	ZNF799	19	12501958	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	56	12501958	46627025	4521	30208										
ZNF443	0	genome.wustl.edu	37	chr19	12541871	12541871	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aactaggacaatcaaagcctTtcccacatatcttacattta	3	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12541871	12541871	T	G	SNP	ZNF443	ENST00000301547	human	ensembl	69_37n	-1	known	missense	c.1115	p.K372T	0.444	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	446	0	0	397	51	11.38	-	-	-	G	12541871	T	G	12541871	3	3	275	1	0	0	0	0	1	0	0	0	18012	1841	64	5	904	5	ZNF443	19	12541871	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	39913	12541871	46587112	4522	30209										
ZNF709	0	genome.wustl.edu	37	chr19	12575804	12575804	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaaggctttcccacattttTtacatttatagggtttttct	6	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12575804	12575804	T	G	SNP	ZNF709	ENST00000397732	human	ensembl	69_37n	-1	known	missense	c.932	p.K311T	0.119	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852	71	0	0	45	7	13.46	-	-	-	G	12575804	T	G	12575804	3	3	275	1	0	0	0	0	1	0	0	0	18209	1841	64	5	997	5	ZNF709	19	12575804	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	33933	12575804	46553179	4523	30210										
ZNF564	0	genome.wustl.edu	37	chr19	12638256	12638256	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgacattcatagggtttCtctccagtgtgagttctttc	8	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12638256	12638256	C	A	SNP	ZNF564	ENST00000339282	human	ensembl	69_37n	-1	known	missense	c.666	p.E222D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	175	0	0	115	53	31.55	-	-	-	A	12638256	C	A	12638256	3	1	275	1	0	0	0	0	1	0	0	0	18091	912	32	2	999	2	ZNF564	19	12638256	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	62452	12638256	46490727	4524	30211										
MAN2B1	0	genome.wustl.edu	37	chr19	12763060	12763060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaggcctggtcactttcGttgtcacctatactggcgtt	10	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12763060	12763060	G	A	SNP	MAN2B1	ENST00000433513	human	ensembl	69_37n	-1	known	missense	c.559	p.R187	0.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2B1	HGNC	ENSG00000104774	122	0	0	94	25	21.01	-	-	-	A	12763060	G	A	12763060	3	1	275	1	0	0	0	0	1	0	0	0	9287	1136	40	1	1118	1	MAN2B1	19	12763060	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	124804	12763060	46365923	4525	30212										
ASNA1	0	genome.wustl.edu	37	chr19	12856239	12856239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgcctgacgagttcttcGaggaggacaacatgctgagc	13	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	12856239	12856239	G	A	SNP	ASNA1	ENST00000357332	human	ensembl	69_37n	1	known	missense	c.358	p.E120K	1.000	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,tigrfam_ATPase_ArsA/Get3	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,tigrfam_ATPase_ArsA/Get3	-	no_errors	ASNA1	HGNC	ENSG00000198356	97	0	0	61	10	14.08	-	-	-	A	12856239	G	A	12856239	3	1	275	1	0	0	0	0	1	0	0	0	1051	1059	37	1	368	1	ASNA1	19	12856239	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	93179	12856239	46272744	4526	30213										
DAND5	0	genome.wustl.edu	37	chr19	13084240	13084240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctcagccatacgcctccGaaatcatctgtgctttggtc	8	14	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	13084240	13084240	G	A	SNP	DAND5	ENST00000317060	human	ensembl	69_37n	1	known	missense	c.362	p.R121Q	0.018	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284	120	0	0	72	18	20	-	-	-	A	13084240	G	A	13084240	3	1	275	1	0	0	0	0	1	0	0	0	4262	1058	37	1	368	1	DAND5	19	13084240	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	228001	13084240	46044743	4527	30214										
OR7C1	0	genome.wustl.edu	37	chr19	14910350	14910350	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggacgccagttgcaaagTatatcaccacgttattaatg	8	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	14910350	14910350	T	C	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	missense	c.599	p.Y200C	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	132	0	0	99	58	36.94	-	-	-	C	14910350	T	C	14910350	3	2	275	1	0	0	0	0	1	0	0	0	11290	1638	57	5	365	5	OR7C1	19	14910350	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1826110	14910350	44218633	4528	30215										
OR7C1	0	genome.wustl.edu	37	chr19	14910448	14910448	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttccatttcggtgcagaaGgacagcctcaaaacagtcaa	8	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	14910448	14910448	G	T	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	silent	c.501	p.S167	0.579	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	265	0	0	283	35	11.01	-	-	-	T	14910448	G	T	14910448	2	4	275	1	0	0	0	0	0	0	0	1	11290	987	35	4		4	OR7C1	19	14910448	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98	14910448	44218535	4529	30216										
SLC1A6	0	genome.wustl.edu	37	chr19	15075174	15075174	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtttggtggaaacatatttCtgcagaaaaacatgagaaga	11	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15075174	15075174	C	T	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	splice_site	c.549-1	e4-1	1.000	-	-	-	no_errors	SLC1A6	HGNC	ENSG00000105143	502	0	0	468	80	14.6	-	-	-	T	15075174	C	T	15075174	5	4	275	1	0	0	0	0	0	0	1	0	14525	927	32	2	1170	2	SLC1A6	19	15075174	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	164726	15075174	44053809	4530	30217										
SLC1A6	0	genome.wustl.edu	37	chr19	15083559	15083559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagcagaatgaaggcgtttCggcgcaggaagcgcagcacg	15	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15083559	15083559	C	T	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.164	p.R55Q	0.998	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	42	0	0	21	4	15.38	-	-	-	T	15083559	C	T	15083559	3	4	275	1	0	0	0	0	1	0	0	0	14525	884	31	1	1566	1	SLC1A6	19	15083559	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8385	15083559	44045424	4531	30218										
CASP14	0	genome.wustl.edu	37	chr19	15166022	15166022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgagattgtgatggtcatcAaagacagcccacaaaccatc	8	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15166022	15166022	A	G	SNP	CASP14	ENST00000221740	human	ensembl	69_37n	1	known	missense	c.457	p.K153E	0.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP14	HGNC	ENSG00000105141	529	0	0	332	134	28.76	-	-	-	G	15166022	A	G	15166022	3	3	275	1	0	0	0	0	1	0	0	0	2695	131	5	5	471	5	CASP14	19	15166022	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	82463	15166022	43962961	4532	30219										
ILVBL	0	genome.wustl.edu	37	chr19	15226687	15226687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgacgaatgtatcaaattCgatgaggctgtagccaaaag	10	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15226687	15226687	C	T	SNP	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	missense	c.1588	p.E530K	1.000	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	55	0	0	30	9	23.08	-	-	-	T	15226687	C	T	15226687	3	4	275	1	0	0	0	0	1	0	0	0	7769	893	31	1	322	1	ILVBL	19	15226687	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	60665	15226687	43902296	4533	30220										
BRD4	0	genome.wustl.edu	37	chr19	15355563	15355563	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgccccttcttttttgacttCggagccatctctgcagagga	9	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15355563	15355563	C	T	SNP	BRD4	ENST00000263377	human	ensembl	69_37n	-1	known	silent	c.2169	p.P723	0.935	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867	76	0	0	40	6	12.77	-	-	-	T	15355563	C	T	15355563	2	4	275	1	0	0	0	0	0	0	0	1	1512	871	31	1		1	BRD4	19	15355563	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	128876	15355563	43773420	4534	30221										
CYP4F12	0	genome.wustl.edu	37	chr19	15789133	15789133	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggccacctattcccagggCtttacgatatggctgggtcc	11	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	15789133	15789133	C	A	SNP	CYP4F12	ENST00000324632	human	ensembl	69_37n	1	known	silent	c.261	p.G87	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204	94	0	0	47	6	11.32	-	-	-	A	15789133	C	A	15789133	2	1	275	1	0	0	0	0	0	0	0	1	4218	784	28	4		4	CYP4F12	19	15789133	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	433570	15789133	43339850	4535	30222										
CYP4F11	0	genome.wustl.edu	37	chr19	16038070	16038070	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcttcatataaggcttcaaGatgttgaaatggaaggcagg	11	5	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	16038070	16038070	G	T	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	silent	c.477	p.I159	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	90	0	0	95	18	15.93	-	-	-	T	16038070	G	T	16038070	2	4	275	1	0	0	0	0	0	0	0	1	4217	932	33	2		2	CYP4F11	19	16038070	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	248937	16038070	43090913	4536	30223										
OR10H4	0	genome.wustl.edu	37	chr19	16059848	16059848	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaactatagcatcatatctGaatttaacctctttggcttc	5	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	16059848	16059848	G	T	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	nonsense	c.31	p.E11*	0.065	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	396	0	0	306	115	27.32	-	-	-	T	16059848	G	T	16059848	4	4	275	1	0	0	0	0	0	1	0	0	10981	1291	45	2	33	2	OR10H4	19	16059848	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21778	16059848	43069135	4537	30224										
MYO9B	0	genome.wustl.edu	37	chr19	17305942	17305942	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtctctgaagaaactgagAagacgctgcccagtgggagc	14	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	17305942	17305942	A	G	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.3706	p.K1236E	0.003	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	16	0	0	9	26	74.29	-	-	-	G	17305942	A	G	17305942	3	3	275	1	0	0	0	0	1	0	0	0	10157	247	9	5	3788	5	MYO9B	19	17305942	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1246094	17305942	41823041	4538	30225										
FAM129C	0	genome.wustl.edu	37	chr19	17643087	17643087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagaagctgccccgagtcCgtgagcaccgaggacccctg	13	15	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	17643087	17643087	C	T	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.295	p.R99C	0.036	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	46	0	0	19	9	32.14	-	-	-	T	17643087	C	T	17643087	3	4	275	1	0	0	0	0	1	0	0	0	5478	652	23	1	309	1	FAM129C	19	17643087	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	337145	17643087	41485896	4539	30226										
JAK3	0	genome.wustl.edu	37	chr19	17950393	17950393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgaagactgctgtggggtCggctgaggccaaccagaagg	16	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	17950393	17950393	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.1334	p.R445Q	0.003	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	76	0	0	38	17	30.91	-	-	-	T	17950393	C	T	17950393	3	4	275	1	0	0	0	0	1	0	0	0	7993	884	31	1	2100	1	JAK3	19	17950393	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	307306	17950393	41178590	4540	30227										
SLC5A5	0	genome.wustl.edu	37	chr19	17983485	17983485	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcctcaccagcacctacgaGgtaccggacagaggcccggg	14	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	17983485	17983485	G	A	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	silent	c.357	p.E119	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	36	0	0	15	5	25	-	-	-	A	17983485	G	A	17983485	2	1	275	1	0	0	0	0	0	0	0	1	14757	1014	35	4		4	SLC5A5	19	17983485	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	33092	17983485	41145498	4541	30228										
IL12RB1	0	genome.wustl.edu	37	chr19	18172994	18172994	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagaggtgtcagttacctgTtcaggccaaggtagccaagg	13	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	18172994	18172994	T	A	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.1712	p.N571I	0.988	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	307	0	0	137	27	16.27	-	-	-	A	18172994	T	A	18172994	3	1	275	1	0	0	0	0	1	0	0	0	7680	1725	60	5	292	5	IL12RB1	19	18172994	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	189509	18172994	40955989	4542	30229										
KIAA1683	0	genome.wustl.edu	37	chr19	18376508	18376508	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaaatgccatgtctgttttCgcctgtttctgggtgccagt	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	18376508	18376508	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	silent	c.1842	p.A614	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	49	0	0	28	9	24.32	-	-	-	T	18376508	C	T	18376508	2	4	275	1	0	0	0	0	0	0	0	1	8303	871	31	1		1	KIAA1683	19	18376508	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	203514	18376508	40752475	4543	30230										
FKBP8	0	genome.wustl.edu	37	chr19	18652709	18652709	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaccccatccagtacctcGaagtcctcgagcggtgggac	10	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	18652709	18652709	G	A	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	silent	c.159	p.F53	0.799	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	46	0	0	40	6	13.04	-	-	-	A	18652709	G	A	18652709	2	1	275	1	0	0	0	0	0	0	0	1	5960	1049	37	1		1	FKBP8	19	18652709	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	276201	18652709	40476274	4544	30231										
PBX4	0	genome.wustl.edu	37	chr19	19680936	19680936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctggcatcgagcagccgcGaacgcagggtcatcactgcc	12	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	19680936	19680936	G	A	SNP	PBX4	ENST00000251203	human	ensembl	69_37n	-1	known	missense	c.614	p.S205L	0.976	pfam_PBX,superfamily_Homeodomain-like	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX4	HGNC	ENSG00000105717	26	0	0	19	10	34.48	-	-	-	A	19680936	G	A	19680936	3	1	275	1	0	0	0	0	1	0	0	0	11568	1059	37	1	530	1	PBX4	19	19680936	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1028227	19680936	39448047	4545	30232										
GMIP	0	genome.wustl.edu	37	chr19	19747800	19747800	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcatccagccttggaggaAgaggcccagagagcttcttt	11	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	19747800	19747800	A	C	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	missense	c.1163	p.L388R	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	49	0	0	21	12	36.36	-	-	-	C	19747800	A	C	19747800	3	2	275	1	0	0	0	0	1	0	0	0	6543	72	3	5	1789	5	GMIP	19	19747800	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	66864	19747800	39381183	4546	30233										
ZNF101	0	genome.wustl.edu	37	chr19	19790823	19790823	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaccttatgaatgtaataAatgtggtaaaaccttcaatt	6	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	19790823	19790823	A	C	SNP	ZNF101	ENST00000318110	human	ensembl	69_37n	1	known	missense	c.1025	p.K342T	0.063	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896	111	0	0	111	41	26.97	-	-	-	C	19790823	A	C	19790823	3	2	275	1	0	0	0	0	1	0	0	0	17810	14	1	5	1039	5	ZNF101	19	19790823	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	43023	19790823	39338160	4547	30234										
ZNF506	0	genome.wustl.edu	37	chr19	19906156	19906156	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgaagactggttaaaagtTttcccatattctatacattt	6	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	19906156	19906156	T	G	SNP	ZNF506	ENST00000443905	human	ensembl	69_37n	-1	known	missense	c.540	p.K180N	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665	199	0	0	140	21	13.04	-	-	-	G	19906156	T	G	19906156	3	3	275	1	0	0	0	0	1	0	0	0	18048	1838	64	5	798	5	ZNF506	19	19906156	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	115333	19906156	39222827	4548	30235										
ZNF506	0	genome.wustl.edu	37	chr19	19917758	19917758	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagttatcctcaccaaggaaGatcaggtttctgtagttctc	8	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	19917758	19917758	G	T	SNP	ZNF506	ENST00000443905	human	ensembl	69_37n	-1	known	silent	c.123	p.I41	0.661	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665	387	1	0.26	232	39	14.39	-	-	-	T	19917758	G	T	19917758	2	4	275	1	0	0	0	0	0	0	0	1	18048	932	33	2		2	ZNF506	19	19917758	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11602	19917758	39211225	4549	30236										
ZNF93	0	genome.wustl.edu	37	chr19	20044991	20044991	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaaagcctttaagtactcCtctacccttagttcacataa	5	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20044991	20044991	C	A	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	silent	c.1227	p.S409	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	91	0	0	70	13	15.66	-	-	-	A	20044991	C	A	20044991	2	1	275	1	0	0	0	0	0	0	0	1	18295	668	24	4		4	ZNF93	19	20044991	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	127233	20044991	39083992	4550	30237										
ZNF93	0	genome.wustl.edu	37	chr19	20045416	20045416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcttttcacctatccacacAccttactacacataagatac	2	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20045416	20045416	A	G	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	missense	c.1652	p.H551R	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	172	0	0	104	19	15.45	-	-	-	G	20045416	A	G	20045416	3	3	275	1	0	0	0	0	1	0	0	0	18295	159	6	5	1666	5	ZNF93	19	20045416	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	425	20045416	39083567	4551	30238										
ZNF90	0	genome.wustl.edu	37	chr19	20229156	20229156	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgtgaagattgtggcaaaGaattaaagtattcctctacc	8	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20229156	20229156	G	T	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	nonsense	c.793	p.E265*	0.137	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	321	0	0	246	36	12.77	-	-	-	T	20229156	G	T	20229156	4	4	275	1	0	0	0	0	0	1	0	0	18292	943	33	2	807	2	ZNF90	19	20229156	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	183740	20229156	38899827	4552	30239										
ZNF90	0	genome.wustl.edu	37	chr19	20229445	20229445	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtccttcgtacacataagaGaattcatactggagagaaac	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20229445	20229445	G	A	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	missense	c.1082	p.R361K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	47	0	0	67	22	24.72	-	-	-	A	20229445	G	A	20229445	3	1	275	1	0	0	0	0	1	0	0	0	18292	942	33	2	1096	2	ZNF90	19	20229445	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	289	20229445	38899538	4553	30240										
ZNF626	0	genome.wustl.edu	37	chr19	20807386	20807386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattgaggactggttgaaggCtttgccacattcttcacatt	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20807386	20807386	C	T	SNP	ZNF626	ENST00000305570	human	ensembl	69_37n	-1	known	missense	c.1297	p.A433T	0.326	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	61	0	0	38	10	20.41	-	-	-	T	20807386	C	T	20807386	3	4	275	1	0	0	0	0	1	0	0	0	18146	797	28	4	293	4	ZNF626	19	20807386	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	577941	20807386	38321597	4554	30241										
ZNF626	0	genome.wustl.edu	37	chr19	20828215	20828215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtctcttatatgtcatgaAgaggactttggctctcactg	9	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	20828215	20828215	A	G	SNP	ZNF626	ENST00000291750	human	ensembl	69_37n	-1	known	missense	c.266	p.L89P	0.086	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	296	0	0	173	32	15.61	-	-	-	G	20828215	A	G	20828215	3	3	275	1	0	0	0	0	1	0	0	0	18146	72	3	5	1381	5	ZNF626	19	20828215	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	20829	20828215	38300768	4555	30242										
ZNF430	0	genome.wustl.edu	37	chr19	21239609	21239609	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagaatgttatgatgaactAaaccagtgtttgacaactac	7	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21239609	21239609	A	C	SNP	ZNF430	ENST00000261560	human	ensembl	69_37n	1	known	silent	c.495	p.L165	0.009	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620	172	0	0	119	34	22.22	-	-	-	C	21239609	A	C	21239609	2	2	275	1	0	0	0	0	0	0	0	1	18000	349	13	5		5	ZNF430	19	21239609	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	411394	21239609	37889374	4556	30243										
ZNF714	0	genome.wustl.edu	37	chr19	21299977	21299977	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagaattcatattagagaGaattcttaccaatgtgaaga	7	4	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21299977	21299977	G	T	SNP	ZNF714	ENST00000291770	human	ensembl	69_37n	1	known	missense	c.507	p.E169D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352	148	0	0	172	28	14	-	-	-	T	21299977	G	T	21299977	3	4	275	1	0	0	0	0	1	0	0	0	18214	933	33	2	517	2	ZNF714	19	21299977	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	60368	21299977	37829006	4557	30244										
ZNF431	0	genome.wustl.edu	37	chr19	21349173	21349173	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggatgtggccatagaattCtctctggaggagtgggaatg	16	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21349173	21349173	C	A	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.132	p.F44L	0.592	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	610	0	0	311	107	25.6	-	-	-	A	21349173	C	A	21349173	3	1	275	1	0	0	0	0	1	0	0	0	18001	912	32	2	142	2	ZNF431	19	21349173	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49196	21349173	37779810	4558	30245										
ZNF431	0	genome.wustl.edu	37	chr19	21366281	21366281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacccttactaaacataaaaGaattcatactggagagaaac	5	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21366281	21366281	G	A	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.1175	p.R392K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	45	0	0	44	17	27.42	-	-	-	A	21366281	G	A	21366281	3	1	275	1	0	0	0	0	1	0	0	0	18001	942	33	2	1193	2	ZNF431	19	21366281	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17108	21366281	37762702	4559	30246										
ZNF708	0	genome.wustl.edu	37	chr19	21477465	21477465	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatccacattttccatatctTctcagtatcacttgttggaa	4	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21477465	21477465	T	G	SNP	ZNF708	ENST00000356929	human	ensembl	69_37n	-1	known	missense	c.303	p.R101S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141	118	0	0	70	42	37.5	-	-	-	G	21477465	T	G	21477465	3	3	275	1	0	0	0	0	1	0	0	0	18208	1780	62	5	1392	5	ZNF708	19	21477465	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	111184	21477465	37651518	4560	30247										
ZNF493	0	genome.wustl.edu	37	chr19	21587966	21587966	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggatgtggccatagaattCtctctggaggagtggcaatg	15	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	21587966	21587966	C	A	SNP	ZNF493	ENST00000392288	human	ensembl	69_37n	1	novel	missense	c.66	p.F22L	0.979	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF493	HGNC	ENSG00000196268	302	0	0	212	64	23.19	-	-	-	A	21587966	C	A	21587966	3	1	275	1	0	0	0	0	1	0	0	0	18040	912	32	2	72	2	ZNF493	19	21587966	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110501	21587966	37541017	4561	30248										
ZNF257	0	genome.wustl.edu	37	chr19	22271019	22271019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatgtaaaagtcttctataAgttttcaaattcagatagac	5	5	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	22271019	22271019	A	C	SNP	ZNF257	ENST00000435820	human	ensembl	69_37n	1	known	missense	c.467	p.K156T	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134	174	0	0	188	35	15.7	-	-	-	C	22271019	A	C	22271019	3	2	275	1	0	0	0	0	1	0	0	0	17896	72	3	5	481	5	ZNF257	19	22271019	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	683053	22271019	36857964	4562	30249										
ZNF676	0	genome.wustl.edu	37	chr19	22363716	22363716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaattgccttatgtgtattaAgggttgagacgctactaaat	10	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	22363716	22363716	A	C	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.803	p.L268R	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	167	0	0	100	30	22.9	-	-	-	C	22363716	A	C	22363716	3	2	275	1	0	0	0	0	1	0	0	0	18179	72	3	5	967	5	ZNF676	19	22363716	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	92697	22363716	36765267	4563	30250										
ZNF492	0	genome.wustl.edu	37	chr19	22847363	22847363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagtcctcaacccttactAcacataagataattcatact	3	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	22847363	22847363	A	G	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	missense	c.892	p.T298A	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	37	0	0	29	12	29.27	-	-	-	G	22847363	A	G	22847363	3	3	275	1	0	0	0	0	1	0	0	0	18039	391	14	5	902	5	ZNF492	19	22847363	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	483647	22847363	36281620	4564	30251										
ZNF492	0	genome.wustl.edu	37	chr19	22847410	22847410	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattctacaaatgtgaagaAtgtggtaaggcctttagcca	9	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	22847410	22847410	A	G	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	silent	c.939	p.E313	0.121	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	69	0	0	70	23	24.73	-	-	-	G	22847410	A	G	22847410	2	3	275	1	0	0	0	0	0	0	0	1	18039	98	4	5		5	ZNF492	19	22847410	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	47	22847410	36281573	4565	30252										
ZNF99	0	genome.wustl.edu	37	chr19	22939391	22939391	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttagtaaggtgtgaggatTgcttaaaagctttgccacat	11	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	22939391	22939391	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.2780	p.Q927R	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	106	0	0	108	32	22.86	-	-	-	C	22939391	T	C	22939391	3	2	275	1	0	0	0	0	1	0	0	0	18297	1812	63	5	336	5	ZNF99	19	22939391	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	91981	22939391	36189592	4566	30253										
ZNF91	0	genome.wustl.edu	37	chr19	23544385	23544385	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tataaatgctttgccacattCtttacatttgaagggtttct	6	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	23544385	23544385	C	A	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	nonsense	c.1396	p.E466*	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	259	0	0	133	57	30	-	-	-	A	23544385	C	A	23544385	4	1	275	1	0	0	0	0	0	1	0	0	18293	922	32	2	2183	2	ZNF91	19	23544385	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	604994	23544385	35584598	4567	30254										
ZNF91	0	genome.wustl.edu	37	chr19	23544756	23544756	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctccagtatgaattCtcttatgtttagcaagggtt	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	23544756	23544756	C	T	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342K	0.021	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	116	0	0	55	21	27.63	-	-	-	T	23544756	C	T	23544756	3	4	275	1	0	0	0	0	1	0	0	0	18293	913	32	2	2554	2	ZNF91	19	23544756	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	371	23544756	35584227	4568	30255										
ZNF254	0	genome.wustl.edu	37	chr19	24309423	24309423	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagcatttatcatagagaGaagtcctacaaatgtaaaga	7	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	24309423	24309423	G	T	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.621	p.E207D	0.987	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	105	0	0	101	17	14.41	-	-	-	T	24309423	G	T	24309423	3	4	275	1	0	0	0	0	1	0	0	0	17894	933	33	2	635	2	ZNF254	19	24309423	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	764667	24309423	34819560	4569	30256										
ZNF254	0	genome.wustl.edu	37	chr19	24309518	24309518	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgaagagaaaccttacaAatgtgaagaatataacaaat	6	5	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	24309518	24309518	A	G	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.716	p.K239R	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	126	0	0	83	46	35.66	-	-	-	G	24309518	A	G	24309518	3	3	275	1	0	0	0	0	1	0	0	0	17894	14	1	5	730	5	ZNF254	19	24309518	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	95	24309518	34819465	4570	30257										
UQCRFS1	0	genome.wustl.edu	37	chr19	29698744	29698744	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcaatttccttctgggttCtatgacgcacaaacaggggt	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	29698744	29698744	C	A	SNP	UQCRFS1	ENST00000304863	human	ensembl	69_37n	-1	known	missense	c.536	p.R179I	1.000	pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	pfam_Ubiqinol_cyt_c_Rdtase_N,pfam_Ubiquinol_cyt_Rdtase_TM,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_Ubiquinol_cyt_Rdtase_TM,superfamily_Globular_prot_asu/bsu,prints_Rieske_Fe-S_prot_C,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	-	no_errors	UQCRFS1	HGNC	ENSG00000169021	152	0	0	99	18	15.38	-	-	-	A	29698744	C	A	29698744	3	1	275	1	0	0	0	0	1	0	0	0	17118	913	32	2	292	2	UQCRFS1	19	29698744	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5389226	29698744	29430239	4571	30258										
ZNF536	0	genome.wustl.edu	37	chr19	30936155	30936155	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggttctgtttgataaggaGaagcgggagtacgtgttagt	17	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	30936155	30936155	G	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.1686	p.E562D	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	112	0	0	44	9	16.98	-	-	-	T	30936155	G	T	30936155	3	4	275	1	0	0	0	0	1	0	0	0	18070	933	33	2	1688	2	ZNF536	19	30936155	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1237411	30936155	28192828	4572	30259										
ZNF507	0	genome.wustl.edu	37	chr19	32845207	32845207	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggacaaattctgagtctcttCgattacactcattagctgca	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	32845207	32845207	C	T	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	1	known	nonsense	c.1471	p.R491*	0.261	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813	128	0	0	99	20	16.81	-	-	-	T	32845207	C	T	32845207	4	4	275	1	0	0	0	0	0	1	0	0	18049	876	31	1	1473	1	ZNF507	19	32845207	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1909052	32845207	26283776	4573	30260										
DPY19L3	0	genome.wustl.edu	37	chr19	32930007	32930007	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttggccatttgtgttttCttttgtgcagaatagatacc	8	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	32930007	32930007	C	A	SNP	DPY19L3	ENST00000585597	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPY19L3	HGNC	ENSG00000178904	344	1	0.29	203	81	28.52	-	-	-	A	32930007	C	A	32930007	1	1	275	0	1	0	0	0	0	0	0	0	4777	928	32	2		2	DPY19L3	19	32930007	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	84800	32930007	26198976	4574	30261										
ANKRD27	0	genome.wustl.edu	37	chr19	33134361	33134361	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgcctgcttcatcaggttCatctgggcctcctgcttggc	10	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33134361	33134361	C	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	missense	c.615	p.M205I	1.000	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	45	0	0	24	7	22.58	-	-	-	A	33134361	C	A	33134361	3	1	275	1	0	0	0	0	1	0	0	0	655	826	29	2	2629	2	ANKRD27	19	33134361	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	204354	33134361	25994622	4575	30262										
ANKRD27	0	genome.wustl.edu	37	chr19	33135274	33135274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcgcattctcggaatgttCgatggaaagaggcgatgttc	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33135274	33135274	C	T	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	missense	c.482	p.R161Q	0.721	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	116	0	0	61	24	28.24	-	-	-	T	33135274	C	T	33135274	3	4	275	1	0	0	0	0	1	0	0	0	655	884	31	1	2770	1	ANKRD27	19	33135274	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	913	33135274	25993709	4576	30263										
SLC7A9	0	genome.wustl.edu	37	chr19	33359367	33359367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccttacctccttttggagaCtggtggtcttaggctcttgg	12	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33359367	33359367	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	missense	c.74	p.S25N	0.001	pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	95	0	0	60	17	22.08	-	-	-	T	33359367	C	T	33359367	3	4	275	1	0	0	0	0	1	0	0	0	14794	565	20	4	1437	4	SLC7A9	19	33359367	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	224093	33359367	25769616	4577	30264										
C19orf40	0	genome.wustl.edu	37	chr19	33467512	33467512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcaactgagtaatgcttCcattggggaactggagcagg	13	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33467512	33467512	C	T	SNP	C19orf40	ENST00000588258	human	ensembl	69_37n	1	known	missense	c.572	p.S191F	0.993	superfamily_RuvA_2-like	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944	150	0	0	116	26	18.18	-	-	-	T	33467512	C	T	33467512	3	4	275	1	0	0	0	0	1	0	0	0	1941	855	30	2	586	2	C19orf40	19	33467512	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	108145	33467512	25661471	4578	30265										
RHPN2	0	genome.wustl.edu	37	chr19	33471064	33471064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaaagcttcttggagatTttcttggttttatcagtttt	9	4	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33471064	33471064	T	G	SNP	RHPN2	ENST00000254260	human	ensembl	69_37n	-1	known	missense	c.1899	p.K633N	0.996	NULL	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941	448	0	0	358	80	18.26	-	-	-	G	33471064	T	G	33471064	3	3	275	1	0	0	0	0	1	0	0	0	13435	1838	64	5	165	5	RHPN2	19	33471064	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	3552	33471064	25657919	4579	30266										
GPATCH1	0	genome.wustl.edu	37	chr19	33600889	33600889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagcaaaagcgatacgacGagttcttagtacacatgaaa	8	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	33600889	33600889	G	A	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.1552	p.E518K	0.514	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	56	0	0	37	8	17.78	-	-	-	A	33600889	G	A	33600889	3	1	275	1	0	0	0	0	1	0	0	0	6640	1059	37	1	1594	1	GPATCH1	19	33600889	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	129825	33600889	25528094	4580	30267										
GPI	0	genome.wustl.edu	37	chr19	34872412	34872412	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgaccctcaaaacatgttCgagttctgggatgtaagtac	9	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	34872412	34872412	C	T	SNP	GPI	ENST00000415930	human	ensembl	69_37n	1	known	silent	c.825	p.F275	0.997	pfam_G6P_Isomerase,prints_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220	71	0	0	51	8	13.33	-	-	-	T	34872412	C	T	34872412	2	4	275	1	0	0	0	0	0	0	0	1	6661	883	31	1		1	GPI	19	34872412	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1271523	34872412	24256571	4581	30268										
UBA2	0	genome.wustl.edu	37	chr19	34929616	34929616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttcctggctgtacaattCgtaacacaccttcagaacct	5	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	34929616	34929616	C	T	SNP	UBA2	ENST00000246548	human	ensembl	69_37n	1	known	missense	c.526	p.R176C	1.000	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261	329	0	0	313	55	14.95	-	-	-	T	34929616	C	T	34929616	3	4	275	1	0	0	0	0	1	0	0	0	16925	884	31	1	548	1	UBA2	19	34929616	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	57204	34929616	24199367	4582	30269										
ZNF792	0	genome.wustl.edu	37	chr19	35449217	35449217	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggctggagctttggttaaaGaatttcccacattcactgca	9	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	35449217	35449217	G	T	SNP	ZNF792	ENST00000404801	human	ensembl	69_37n	-1	known	missense	c.1542	p.F514L	0.030	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	160	0	0	109	20	15.5	-	-	-	T	35449217	G	T	35449217	3	4	275	1	0	0	0	0	1	0	0	0	18257	933	33	2	360	2	ZNF792	19	35449217	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	519601	35449217	23679766	4583	30270										
ZNF792	0	genome.wustl.edu	37	chr19	35451236	35451236	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatctccaactgggaaacGatgtgggacctgaaagatat	10	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	35451236	35451236	G	A	SNP	ZNF792	ENST00000404801	human	ensembl	69_37n	-1	known	silent	c.186	p.I62	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	158	0	0	89	27	23.28	-	-	-	A	35451236	G	A	35451236	2	1	275	1	0	0	0	0	0	0	0	1	18257	1048	37	1		1	ZNF792	19	35451236	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2019	35451236	23677747	4584	30271										
CD22	0	genome.wustl.edu	37	chr19	35837505	35837505	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattccagattttccagaaGatgaggggattcattactca	8	8	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	35837505	35837505	G	T	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	missense	c.2449	p.D817Y	0.776	NULL	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	112	0	0	69	8	10.39	-	-	-	T	35837505	G	T	35837505	3	4	275	1	0	0	0	0	1	0	0	0	3014	942	33	2	2499	2	CD22	19	35837505	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	386269	35837505	23291478	4585	30272										
APLP1	0	genome.wustl.edu	37	chr19	36368715	36368715	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggtgggctgcagcctccaGattccaaggatggtgagtga	16	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	36368715	36368715	G	T	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	missense	c.1540	p.D514Y	0.297	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	79	0	0	49	16	24.62	-	-	-	T	36368715	G	T	36368715	3	4	275	1	0	0	0	0	1	0	0	0	780	942	33	2	1586	2	APLP1	19	36368715	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	531210	36368715	22760268	4586	30273										
APLP1	0	genome.wustl.edu	37	chr19	36369976	36369976	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccatctcctctccctgcagGcaccagctgggacaggggtg	12	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	36369976	36369976	G	T	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	missense	c.1714	p.A572S	0.995	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	60	0	0	44	9	16.98	-	-	-	T	36369976	G	T	36369976	3	4	275	1	0	0	0	0	1	0	0	0	780	1217	42	4	1776	4	APLP1	19	36369976	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1261	36369976	22759007	4587	30274										
WDR62	0	genome.wustl.edu	37	chr19	36574083	36574083	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtgaaagccggggtgcgggTcatgcaggtcagtcctgacg	17	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	36574083	36574083	T	G	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.1490	p.V497G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	142	1	0.7	133	20	13.07	-	-	-	G	36574083	T	G	36574083	3	3	275	1	0	0	0	0	1	0	0	0	17410	1667	58	5	1532	5	WDR62	19	36574083	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	204107	36574083	22554900	4588	30275										
WDR62	0	genome.wustl.edu	37	chr19	36584994	36584994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagccctggagagcaaacaGaggatgatctggaggaagag	16	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	36584994	36584994	G	A	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.2395	p.E799K	0.993	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	179	0	0	162	57	25.91	-	-	-	A	36584994	G	A	36584994	3	1	275	1	0	0	0	0	1	0	0	0	17410	943	33	2	2473	2	WDR62	19	36584994	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10911	36584994	22543989	4589	30276										
ZNF382	0	genome.wustl.edu	37	chr19	37117512	37117512	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagagctcacagaggagaaaGaacctttgaatacaataaag	9	6	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37117512	37117512	G	T	SNP	ZNF382	ENST00000292928	human	ensembl	69_37n	1	known	missense	c.713	p.R238I	0.183	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298	60	0	0	63	13	17.11	-	-	-	T	37117512	G	T	37117512	3	4	275	1	0	0	0	0	1	0	0	0	17969	942	33	2	723	2	ZNF382	19	37117512	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	532518	37117512	22011471	4590	30277										
ZNF382	0	genome.wustl.edu	37	chr19	37117746	37117746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atacctcattgaacatcagcGaattcacacaggtgaaaaac	6	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37117746	37117746	G	A	SNP	ZNF382	ENST00000292928	human	ensembl	69_37n	1	known	missense	c.947	p.R316Q	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298	111	0	0	135	21	13.46	-	-	-	A	37117746	G	A	37117746	3	1	275	1	0	0	0	0	1	0	0	0	17969	1058	37	1	957	1	ZNF382	19	37117746	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	234	37117746	22011237	4591	30278										
ZNF585A	0	genome.wustl.edu	37	chr19	37643141	37643141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgaaggctttcccacattCgtggcattcatactgtctct	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37643141	37643141	C	T	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	missense	c.1660	p.E554K	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	315	0	0	233	75	24.35	-	-	-	T	37643141	C	T	37643141	3	4	275	1	0	0	0	0	1	0	0	0	18113	893	31	1	653	1	ZNF585A	19	37643141	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	525395	37643141	21485842	4592	30279										
ZNF585B	0	genome.wustl.edu	37	chr19	37677234	37677234	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttttctcctgtatgaattCtctgatgcactgtgagtgct	8	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37677234	37677234	C	A	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.1205	p.R402I	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	319	0	0	234	43	15.52	-	-	-	A	37677234	C	A	37677234	3	1	275	1	0	0	0	0	1	0	0	0	18114	913	32	2	1108	2	ZNF585B	19	37677234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34093	37677234	21451749	4593	30280										
HKR1	0	genome.wustl.edu	37	chr19	37838097	37838097	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttttgtgttaaaggcgttCgtggcattcagggatgtggc	15	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37838097	37838097	C	T	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	silent	c.96	p.F32	0.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	831	1	0.12	500	75	12.98	-	-	-	T	37838097	C	T	37838097	2	4	275	1	0	0	0	0	0	0	0	1	7245	883	31	1		1	HKR1	19	37838097	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	160863	37838097	21290886	4594	30281										
HKR1	0	genome.wustl.edu	37	chr19	37838748	37838748	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgccctggagagaggagaGaaaatgtccactggacctct	13	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37838748	37838748	G	T	SNP	HKR1	ENST00000590582	human	ensembl	69_37n	1	putative	nonsense	c.292	p.E98*	0.322	NULL	NULL	-	no_stop_codon	HKR1	HGNC	ENSG00000181666	324	0	0	233	37	13.7	-	-	-	T	37838748	G	T	37838748	4	4	275	1	0	0	0	0	0	1	0	0	7245	942	33	2	297	2	HKR1	19	37838748	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	651	37838748	21290235	4595	30282										
HKR1	0	genome.wustl.edu	37	chr19	37853229	37853229	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaatggattcaagagggaGaagactccagactcctgttt	11	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37853229	37853229	G	A	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	missense	c.532	p.E178K	0.920	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	92	0	0	70	10	12.5	-	-	-	A	37853229	G	A	37853229	3	1	275	1	0	0	0	0	1	0	0	0	7245	943	33	2	546	2	HKR1	19	37853229	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14481	37853229	21275754	4596	30283										
ZNF527	0	genome.wustl.edu	37	chr19	37879832	37879832	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctttactcaacctcagaGaattcacagtggagaaaaac	6	9	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37879832	37879832	G	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.881	p.R294I	0.964	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	74	0	0	71	19	21.11	-	-	-	T	37879832	G	T	37879832	3	4	275	1	0	0	0	0	1	0	0	0	18064	942	33	2	895	2	ZNF527	19	37879832	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	26603	37879832	21249151	4597	30284										
ZNF569	0	genome.wustl.edu	37	chr19	37904688	37904688	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggtttctctccagtatgaAttttttcatgatcaataaga	6	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	37904688	37904688	A	T	SNP	ZNF569	ENST00000316950	human	ensembl	69_37n	-1	known	missense	c.872	p.I291N	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	95	0	0	74	39	34.21	-	-	-	T	37904688	A	T	37904688	3	4	275	1	0	0	0	0	1	0	0	0	18096	101	4	5	1192	5	ZNF569	19	37904688	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	24856	37904688	21224295	4598	30285										
ZNF793	0	genome.wustl.edu	37	chr19	38027861	38027861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatgcttttgaggccaggcGcagccataagcaagaaaaca	10	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38027861	38027861	G	A	SNP	ZNF793	ENST00000445217	human	ensembl	69_37n	1	known	missense	c.301	p.A101T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227	102	0	0	76	21	20.39	-	-	-	A	38027861	G	A	38027861	3	1	275	1	0	0	0	0	1	0	0	0	18258	1087	38	1	315	1	ZNF793	19	38027861	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	123173	38027861	21101122	4599	30286										
ZNF540	0	genome.wustl.edu	37	chr19	38104061	38104061	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaccttactgaacatcagaGaattcacactggtgagaaac	7	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38104061	38104061	G	T	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1880	p.R627I	0.970	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	90	0	0	97	16	14.16	-	-	-	T	38104061	G	T	38104061	3	4	275	1	0	0	0	0	1	0	0	0	18071	942	33	2	1894	2	ZNF540	19	38104061	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	76200	38104061	21024922	4600	30287										
ZNF607	0	genome.wustl.edu	37	chr19	38189290	38189290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttttcaccagcatgagttCggtcatgatatatgaggctt	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38189290	38189290	C	T	SNP	ZNF607	ENST00000355202	human	ensembl	69_37n	-1	known	missense	c.1742	p.R581Q	0.291	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182	62	0	0	65	12	15.58	-	-	-	T	38189290	C	T	38189290	3	4	275	1	0	0	0	0	1	0	0	0	18129	884	31	1	352	1	ZNF607	19	38189290	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85229	38189290	20939693	4601	30288										
SIPA1L3	0	genome.wustl.edu	37	chr19	38590710	38590710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctggagtatgtcatccccGagctcaacatccactgcctg	8	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38590710	38590710	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.1774	p.E592K	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	86	0	0	67	20	22.99	-	-	-	A	38590710	G	A	38590710	3	1	275	1	0	0	0	0	1	0	0	0	14420	1059	37	1	1784	1	SIPA1L3	19	38590710	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	401420	38590710	20538273	4602	30289										
PSMD8	0	genome.wustl.edu	37	chr19	38871613	38871613	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccgagagctacaccttcttCattgacatcctgctcgacac	7	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38871613	38871613	C	A	SNP	PSMD8	ENST00000215071	human	ensembl	69_37n	1	known	missense	c.777	p.F259L	1.000	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	PSMD8	HGNC	ENSG00000099341	141	1	0.7	80	28	25.93	-	-	-	A	38871613	C	A	38871613	3	1	275	1	0	0	0	0	1	0	0	0	12784	825	29	2	795	2	PSMD8	19	38871613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	280903	38871613	20257370	4603	30290										
RYR1	0	genome.wustl.edu	37	chr19	38958302	38958302	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcgcatcttccgggcagaGaaatcctatacagtgcagag	12	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	38958302	38958302	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.3231	p.E1077	1.000	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	198	0	0	154	21	11.86	-	-	-	A	38958302	G	A	38958302	2	1	275	1	0	0	0	0	0	0	0	1	13854	933	33	2		2	RYR1	19	38958302	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	86689	38958302	20170681	4604	30291										
RYR1	0	genome.wustl.edu	37	chr19	39025386	39025386	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagatggagaagcagaggctCttgtaccagcaagcacggct	13	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	39025386	39025386	C	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.11286	p.L3762	0.849	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	252	0	0	154	27	14.92	-	-	-	A	39025386	C	A	39025386	2	1	275	1	0	0	0	0	0	0	0	1	13854	900	32	2		2	RYR1	19	39025386	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	67084	39025386	20103597	4605	30292										
RYR1	0	genome.wustl.edu	37	chr19	39051876	39051876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accgcttccaggagccagcaCgcgacatcggcttcaacgtg	11	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	39051876	39051876	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.12406	p.R4136C	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	159	0	0	105	37	25.69	-	-	-	T	39051876	C	T	39051876	3	4	275	1	0	0	0	0	1	0	0	0	13854	536	19	1	12764	1	RYR1	19	39051876	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26490	39051876	20077107	4606	30293										
PLEKHG2	0	genome.wustl.edu	37	chr19	39912766	39912766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcacagcacgctggcagCgaaggggaactctaccctcc	10	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	39912766	39912766	C	T	SNP	PLEKHG2	ENST00000205135	human	ensembl	69_37n	1	putative	missense	c.1118	p.A373V	0.973	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHG2	HGNC	ENSG00000090924	155	0	0	104	17	13.93	-	-	-	T	39912766	C	T	39912766	3	4	275	1	0	0	0	0	1	0	0	0	12143	767	27	1	1577	1	PLEKHG2	19	39912766	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	860890	39912766	19216217	4607	30294										
LGALS14	0	genome.wustl.edu	37	chr19	40197855	40197855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgaatttctacactgggAtggatgaggactcagatatt	12	5	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40197855	40197855	A	G	SNP	LGALS14	ENST00000360675	human	ensembl	69_37n	1	known	missense	c.217	p.M73V	0.002	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659	348	0	0	216	66	23.4	-	-	-	G	40197855	A	G	40197855	3	3	275	1	0	0	0	0	1	0	0	0	8795	333	12	5	246	5	LGALS14	19	40197855	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	285089	40197855	18931128	4608	30295										
FCGBP	0	genome.wustl.edu	37	chr19	40367448	40367448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcccccaagggtggtccgtgGcagggtgcactcagcaggta	16	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40367448	40367448	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.13512	p.C4504	0.650	pfam_VWF_type-D,smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	11	0	0	4	5	55.56	-	-	-	A	40367448	G	A	40367448	2	1	275	1	0	0	0	0	0	0	0	1	5824	1195	42	4		4	FCGBP	19	40367448	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	169593	40367448	18761535	4609	30296										
FCGBP	0	genome.wustl.edu	37	chr19	40433015	40433015	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctatagccttggccagcccGaaggtgagcagtcccaagtt	11	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40433015	40433015	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.1254	p.F418	0.735	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	190	1	0.52	93	37	28.46	-	-	-	A	40433015	G	A	40433015	2	1	275	1	0	0	0	0	0	0	0	1	5824	1049	37	1		1	FCGBP	19	40433015	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	65567	40433015	18695968	4610	30297										
PSMC4	0	genome.wustl.edu	37	chr19	40480526	40480526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctcccgctcacgcatttcGagctctacaagcaggtgagg	11	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40480526	40480526	G	A	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.565	p.E189K	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	76	0	0	75	9	10.59	-	-	-	A	40480526	G	A	40480526	3	1	275	1	0	0	0	0	1	0	0	0	12769	1059	37	1	583	1	PSMC4	19	40480526	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	47511	40480526	18648457	4611	30298										
ZNF546	0	genome.wustl.edu	37	chr19	40521228	40521228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctatcatcttactcaacatcAcagaggccatactggtgaga	7	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40521228	40521228	A	G	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	missense	c.2051	p.H684R	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	154	0	0	116	55	31.98	-	-	-	G	40521228	A	G	40521228	3	3	275	1	0	0	0	0	1	0	0	0	18074	159	6	5	2069	5	ZNF546	19	40521228	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	40702	40521228	18607755	4612	30299										
ZNF780B	0	genome.wustl.edu	37	chr19	40540983	40540983	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aataaggtgcatatgaagtcGaaaggctttcccacattcct	8	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40540983	40540983	G	A	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	nonsense	c.1783	p.R595*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	341	0	0	249	46	15.54	-	-	-	A	40540983	G	A	40540983	4	1	275	1	0	0	0	0	0	1	0	0	18246	1066	37	1	722	1	ZNF780B	19	40540983	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	19755	40540983	18588000	4613	30300										
ZNF780B	0	genome.wustl.edu	37	chr19	40541996	40541996	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtttgagctacgattaaaaGacttcccacattccttacat	6	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40541996	40541996	G	T	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	missense	c.770	p.S257Y	0.098	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	243	0	0	230	31	11.88	-	-	-	T	40541996	G	T	40541996	3	4	275	1	0	0	0	0	1	0	0	0	18246	942	33	2	1735	2	ZNF780B	19	40541996	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1013	40541996	18586987	4614	30301										
ZNF780A	0	genome.wustl.edu	37	chr19	40578775	40578775	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcctacattcataggatttCcaggctacaatacactaaag	6	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40578775	40578775	C	A	SNP	ZNF780A	ENST00000414720	human	ensembl	69_37n	-1	known	nonsense	c.466	p.E156*	0.580	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	238	1	0.42	102	21	17.07	-	-	-	A	40578775	C	A	40578775	4	1	275	1	0	0	0	0	0	1	0	0	18245	864	30	2	14	2	ZNF780A	19	40578775	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36779	40578775	18550208	4615	30302										
ZNF780A	0	genome.wustl.edu	37	chr19	40580628	40580628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtatgcaatttctgatgtCgaataaggtgcatatgaagt	10	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	40580628	40580628	C	T	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	missense	c.1724	p.R575Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	368	1	0.27	269	46	14.56	-	-	-	T	40580628	C	T	40580628	3	4	275	1	0	0	0	0	1	0	0	0	18245	884	31	1	335	1	ZNF780A	19	40580628	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1853	40580628	18548355	4616	30303										
MIA	0	genome.wustl.edu	37	chr19	41282969	41282969	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accctgaaacctggcaaagtCgatgtgaagacagacgtgag	12	9	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	41282969	41282969	C	T	SNP	MIA	ENST00000263369	human	ensembl	69_37n	1	known	silent	c.357	p.V119	0.000	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	MIA	HGNC	ENSG00000261857	73	0	0	53	9	14.52	-	-	-	T	41282969	C	T	41282969	2	4	275	1	0	0	0	0	0	0	0	1	9634	871	31	1		1	MIA	19	41282969	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	702341	41282969	17846014	4617	30304										
ATP5SL	0	genome.wustl.edu	37	chr19	41939320	41939320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcgctgcagcgacaaggaCtggagctccttcaggcggac	14	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	41939320	41939320	C	A	SNP	ATP5SL	ENST00000417807	human	ensembl	69_37n	-1	known	missense	c.471	p.Q157H	0.964	NULL	NULL	-	no_errors	ATP5SL	HGNC	ENSG00000105341	90	0	0	51	18	26.09	-	-	-	A	41939320	C	A	41939320	3	1	275	1	0	0	0	0	1	0	0	0	1168	564	20	4	328	4	ATP5SL	19	41939320	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	656351	41939320	17189663	4618	30305										
RABAC1	0	genome.wustl.edu	37	chr19	42461190	42461190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagcacccagaagacggccGagcccgcaccagccagccag	11	19	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	42461190	42461190	G	A	SNP	RABAC1	ENST00000222008	human	ensembl	69_37n	-1	known	missense	c.449	p.S150L	0.998	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	RABAC1	HGNC	ENSG00000105404	17	0	0	26	9	25.71	-	-	-	A	42461190	G	A	42461190	3	1	275	1	0	0	0	0	1	0	0	0	13043	1059	37	1	116	1	RABAC1	19	42461190	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	521870	42461190	16667793	4619	30306										
MEGF8	0	genome.wustl.edu	37	chr19	42852444	42852444	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctcaattgtccgcagcacGaccatcaccctaacacccag	6	17	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	42852444	42852444	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	silent	c.2118	p.T706	0.979	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	206	0	0	122	19	13.38	-	-	-	A	42852444	G	A	42852444	2	1	275	1	0	0	0	0	0	0	0	1	9534	1073	37	1		1	MEGF8	19	42852444	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	391254	42852444	16276539	4620	30307										
PSG8	0	genome.wustl.edu	37	chr19	43259203	43259203	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggtcccttatttcacattGatagggtcctgtttcatttc	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	43259203	43259203	G	A	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	nonsense	c.925	p.Q309*	0.457	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	713	0	0	457	90	16.36	-	-	-	A	43259203	G	A	43259203	4	1	275	1	0	0	0	0	0	1	0	0	12741	1299	45	2	384	2	PSG8	19	43259203	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406759	43259203	15869780	4621	30308										
PSG9	0	genome.wustl.edu	37	chr19	43762547	43762547	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgtgaagcaggacaagtcGaggttttctcctgaacggta	12	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	43762547	43762547	G	A	SNP	PSG9	ENST00000270077	human	ensembl	69_37n	-1	known	silent	c.1050	p.L350	0.002	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG9	HGNC	ENSG00000183668	356	1	0.28	342	42	10.91	-	-	-	A	43762547	G	A	43762547	2	1	275	1	0	0	0	0	0	0	0	1	12742	1045	37	1		1	PSG9	19	43762547	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	503344	43762547	15366436	4622	30309										
IRGQ	0	genome.wustl.edu	37	chr19	44097102	44097102	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctggtagcagcaaggcctgGacctgggcccagtccttctc	12	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44097102	44097102	G	T	SNP	IRGQ	ENST00000422989	human	ensembl	69_37n	-1	known	silent	c.948	p.V316	0.999	NULL	NULL	-	no_errors	IRGQ	HGNC	ENSG00000167378	60	0	0	20	13	39.39	-	-	-	T	44097102	G	T	44097102	2	4	275	1	0	0	0	0	0	0	0	1	7893	1161	41	2		2	IRGQ	19	44097102	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	334555	44097102	15031881	4623	30310										
ZNF283	0	genome.wustl.edu	37	chr19	44341306	44341306	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacgtggatgtaatgttggaGaactatagtaacttggtgtc	12	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44341306	44341306	G	A	SNP	ZNF283	ENST00000324461	human	ensembl	69_37n	1	known	silent	c.312	p.E104	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637	504	0	0	360	59	14.05	-	-	-	A	44341306	G	A	44341306	2	1	275	1	0	0	0	0	0	0	0	1	17916	933	33	2		2	ZNF283	19	44341306	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	244204	44341306	14787677	4624	30311										
ZNF404	0	genome.wustl.edu	37	chr19	44377438	44377438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaacaagtagatagctgcGaacaaaggccttttcacatt	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44377438	44377438	G	A	SNP	ZNF404	ENST00000587539	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF404	HGNC	ENSG00000176222	116	0	0	50	30	37.04	-	-	-	A	44377438	G	A	44377438	3	1	275	1	0	0	0	0	1	0	0	0	17982	1058	37	1	734	1	ZNF404	19	44377438	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	36132	44377438	14751545	4625	30312										
ZNF230	0	genome.wustl.edu	37	chr19	44513052	44513052	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatgcttgagaacttcacGaacctgctgtcagtgggtga	13	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44513052	44513052	G	A	SNP	ZNF230	ENST00000429154	human	ensembl	69_37n	1	known	silent	c.126	p.T42	0.944	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882	243	0	0	258	40	13.29	-	-	-	A	44513052	G	A	44513052	2	1	275	1	0	0	0	0	0	0	0	1	17880	1045	37	1		1	ZNF230	19	44513052	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135614	44513052	14615931	4626	30313										
ZNF284	0	genome.wustl.edu	37	chr19	44590315	44590315	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagaatccacactggagaGaaaccattcaaatgtgagca	9	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44590315	44590315	G	T	SNP	ZNF284	ENST00000421176	human	ensembl	69_37n	1	known	missense	c.684	p.E228D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF284	HGNC	ENSG00000186026	165	0	0	127	45	26.16	-	-	-	T	44590315	G	T	44590315	3	4	275	1	0	0	0	0	1	0	0	0	17917	933	33	2	698	2	ZNF284	19	44590315	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	77263	44590315	14538668	4627	30314										
ZNF235	0	genome.wustl.edu	37	chr19	44792041	44792041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttcccacacacgttgcatCgaaatggtttctctcctgta	6	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44792041	44792041	C	T	SNP	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	missense	c.1547	p.R516Q	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	357	0	0	224	81	26.56	-	-	-	T	44792041	C	T	44792041	3	4	275	1	0	0	0	0	1	0	0	0	17884	884	31	1	673	1	ZNF235	19	44792041	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	201726	44792041	14336942	4628	30315										
ZNF229	0	genome.wustl.edu	37	chr19	44933359	44933359	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcagtctctgatgcatgaGaagccctgagctgtaactga	12	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44933359	44933359	G	T	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.1597	p.L533I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	256	0	0	162	28	14.66	-	-	-	T	44933359	G	T	44933359	3	4	275	1	0	0	0	0	1	0	0	0	17878	942	33	2	884	2	ZNF229	19	44933359	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	141318	44933359	14195624	4629	30316										
ZNF180	0	genome.wustl.edu	37	chr19	44980740	44980740	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctctccagtatgagttCtttgatgcacaataagtcga	8	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	44980740	44980740	C	T	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	missense	c.1958	p.R653K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	332	0	0	238	39	13.98	-	-	-	T	44980740	C	T	44980740	3	4	275	1	0	0	0	0	1	0	0	0	17844	913	32	2	124	2	ZNF180	19	44980740	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	47381	44980740	14148243	4630	30317										
CEACAM20	0	genome.wustl.edu	37	chr19	45010249	45010249	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttggatgtaagtgttgggCtctggattcacaagctcctg	12	7	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	45010249	45010249	C	T	SNP	CEACAM20	ENST00000412211	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	136	0	0	145	22	13.17	-	-	-	T	45010249	C	T	45010249	1	4	275	0	1	0	0	0	0	0	0	0	3220	796	28	4		4	CEACAM20	19	45010249	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	29509	45010249	14118734	4631	30318										
CEACAM20	0	genome.wustl.edu	37	chr19	45016957	45016957	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtggggtgctcctccttCgggatgggttgtgaggtctc	16	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	45016957	45016957	C	T	SNP	CEACAM20	ENST00000316962	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	803	0	0	670	109	13.99	-	-	-	T	45016957	C	T	45016957	1	4	275	0	1	0	0	0	0	0	0	0	3220	893	31	1		1	CEACAM20	19	45016957	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6708	45016957	14112026	4632	30319										
PVR	0	genome.wustl.edu	37	chr19	45162113	45162113	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggggatcgggatttatttCtattggtccaaatgttcccg	11	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	45162113	45162113	C	A	SNP	PVR	ENST00000425690	human	ensembl	69_37n	1	known	missense	c.1095	p.F365L	0.002	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVR	HGNC	ENSG00000073008	217	0	0	141	36	20.34	-	-	-	A	45162113	C	A	45162113	3	1	275	1	0	0	0	0	1	0	0	0	12920	912	32	2	1117	2	PVR	19	45162113	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	145156	45162113	13966870	4633	30320										
CBLC	0	genome.wustl.edu	37	chr19	45285709	45285709	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcctcacctatgatgaggTccaagagcgtctgcaggcct	10	13	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	45285709	45285709	T	C	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	missense	c.740	p.V247A	0.999	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	65	0	0	54	8	12.31	-	-	-	C	45285709	T	C	45285709	3	2	275	1	0	0	0	0	1	0	0	0	2727	1667	58	5	754	5	CBLC	19	45285709	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	123596	45285709	13843274	4634	30321										
EXOC3L2	0	genome.wustl.edu	37	chr19	45731006	45731006	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggactgctgggttctcatgGaatcgctccacacgctgctg	12	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	45731006	45731006	G	A	SNP	EXOC3L2	ENST00000252482	human	ensembl	69_37n	-1	known	silent	c.318	p.F106	1.000	pfam_Sec6	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201	163	0	0	116	32	21.48	-	-	-	A	45731006	G	A	45731006	2	1	275	1	0	0	0	0	0	0	0	1	5341	1165	41	2		2	EXOC3L2	19	45731006	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	445297	45731006	13397977	4635	30322										
RSPH6A	0	genome.wustl.edu	37	chr19	46318102	46318102	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggctggtggtgagctcggcGacctgcatcctgctttcatc	13	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	46318102	46318102	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	69_37n	-1	known	silent	c.333	p.V111	0.000	NULL	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941	49	0	0	22	12	35.29	-	-	-	A	46318102	G	A	46318102	2	1	275	1	0	0	0	0	0	0	0	1	13793	1045	37	1		1	RSPH6A	19	46318102	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	587096	46318102	12810881	4636	30323										
FOXA3	0	genome.wustl.edu	37	chr19	46376112	46376112	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttcctccacaccctatttCactggcctggagctcccagg	8	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	46376112	46376112	C	A	SNP	FOXA3	ENST00000302177	human	ensembl	69_37n	1	known	missense	c.849	p.F283L	0.968	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608	165	1	0.6	86	10	10.42	-	-	-	A	46376112	C	A	46376112	3	1	275	1	0	0	0	0	1	0	0	0	6037	825	29	2	855	2	FOXA3	19	46376112	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	58010	46376112	12752871	4637	30324										
IGFL2	0	genome.wustl.edu	37	chr19	46651547	46651547	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagctccatggtgcccagAatcttcggtaaggtaaccct	10	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	46651547	46651547	A	C	SNP	IGFL2	ENST00000377693	human	ensembl	69_37n	1	known	missense	c.12	p.R4S	0.009	NULL	NULL	-	no_errors	IGFL2	HGNC	ENSG00000204866	550	0	0	461	59	11.35	-	-	-	C	46651547	A	C	46651547	3	2	275	1	0	0	0	0	1	0	0	0	7641	243	9	5	14	5	IGFL2	19	46651547	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	275435	46651547	12477436	4638	30325										
PPP5C	0	genome.wustl.edu	37	chr19	46890675	46890675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcaccctggatgacatccGgaaaattgagcggaatcgac	11	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	46890675	46890675	G	A	SNP	PPP5C	ENST00000012443	human	ensembl	69_37n	1	known	missense	c.1100	p.R367Q	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485	84	0	0	58	23	27.38	-	-	-	A	46890675	G	A	46890675	3	1	275	1	0	0	0	0	1	0	0	0	12483	1116	39	1	1134	1	PPP5C	19	46890675	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	239128	46890675	12238308	4639	30326										
ARHGAP35	0	genome.wustl.edu	37	chr19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccatcttacagcctgtttCgagaagacacatcactgcct	7	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	47424921	47424921	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	nonsense	c.2989	p.R997*	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	67	0	0	47	7	12.96	-	-	-	T	47424921	C	T	47424921	4	4	275	1	0	0	0	0	0	1	0	0	6846	876	31	1	2991	1	ARHGAP35	19	47424921	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	534246	47424921	11704062	4640	30327										
C5AR1	0	genome.wustl.edu	37	chr19	47823968	47823968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggcttccagggccgactgCggaaatccctccccagcctc	11	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	47823968	47823968	C	T	SNP	C5AR1	ENST00000355085	human	ensembl	69_37n	1	known	missense	c.934	p.R312W	0.001	prints_Anphylx_rcpt,prints_Brdyknn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C5A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt,prints_Frt_met_rcpt	-	no_errors	C5AR1	HGNC	ENSG00000197405	53	0	0	55	7	11.29	-	-	-	T	47823968	C	T	47823968	3	4	275	1	0	0	0	0	1	0	0	0	2302	759	27	1	939	1	C5AR1	19	47823968	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	399047	47823968	11305015	4641	30328										
MEIS3	0	genome.wustl.edu	37	chr19	47918354	47918354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagcacctggatggcctggAtcatctgaaaacgtgggcgg	15	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	47918354	47918354	A	G	SNP	MEIS3	ENST00000559524	human	ensembl	69_37n	-1	known	missense	c.401	p.I134T	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS3	HGNC	ENSG00000105419	48	0	0	29	6	16.67	-	-	-	G	47918354	A	G	47918354	3	3	275	1	0	0	0	0	1	0	0	0	9540	333	12	5	896	5	MEIS3	19	47918354	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	94386	47918354	11210629	4642	30329										
CRX	0	genome.wustl.edu	37	chr19	48342922	48342922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacctacgccccggcctccGctttctgctcttccccctcc	6	22	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	48342922	48342922	G	A	SNP	CRX	ENST00000221996	human	ensembl	69_37n	1	known	missense	c.598	p.A200T	0.997	pfam_Otx_TF_C	pfam_Homeodomain,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	CRX	HGNC	ENSG00000105392	146	0	0	129	24	15.48	-	-	-	A	48342922	G	A	48342922	3	1	275	1	0	0	0	0	1	0	0	0	3932	1087	38	1	608	1	CRX	19	48342922	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	424568	48342922	10786061	4643	30330										
CABP5	0	genome.wustl.edu	37	chr19	48543980	48543980	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacccatctcggtccttatcGaactcaagaaatgcttcccg	6	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	48543980	48543980	G	A	SNP	CABP5	ENST00000293255	human	ensembl	69_37n	-1	known	silent	c.120	p.F40	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CABP5	HGNC	ENSG00000105507	186	0	0	109	40	26.67	-	-	-	A	48543980	G	A	48543980	2	1	275	1	0	0	0	0	0	0	0	1	2559	1049	37	1		1	CABP5	19	48543980	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	201058	48543980	10585003	4644	30331										
CCDC114	0	genome.wustl.edu	37	chr19	48800582	48800582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtgacgtggccaagagagCcacggtctctgctagtcttg	13	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	48800582	48800582	C	T	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	missense	c.1664	p.G555D	0.068	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	91	0	0	46	19	29.23	-	-	-	T	48800582	C	T	48800582	3	4	275	1	0	0	0	0	1	0	0	0	2776	739	26	4	352	4	CCDC114	19	48800582	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256602	48800582	10328401	4645	30332										
PLEKHA4	0	genome.wustl.edu	37	chr19	49340798	49340798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagggtctccctgggagtcCaaatttccacctggagagga	13	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	49340798	49340798	C	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	missense	c.2088	p.L696F	0.467	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	64	0	0	38	11	22.45	-	-	-	A	49340798	C	A	49340798	3	1	275	1	0	0	0	0	1	0	0	0	12132	593	21	4	255	4	PLEKHA4	19	49340798	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	540216	49340798	9788185	4646	30333										
FTL	0	genome.wustl.edu	37	chr19	49469965	49469965	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggctgggcgagtatctcttCgaaaggctcactctcaagca	12	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	49469965	49469965	C	T	SNP	FTL	ENST00000331825	human	ensembl	69_37n	1	known	silent	c.501	p.F167	0.657	superfamily_Ferritin/RR-like	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTL	HGNC	ENSG00000087086	73	0	0	21	9	30	-	-	-	T	49469965	C	T	49469965	2	4	275	1	0	0	0	0	0	0	0	1	6133	883	31	1		1	FTL	19	49469965	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	129167	49469965	9659018	4647	30334										
GYS1	0	genome.wustl.edu	37	chr19	49477914	49477914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctattgaagaggccgattCggcggatggtggtcaggatg	17	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	49477914	49477914	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.1385	p.R462Q	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	105	1	0.94	58	24	28.92	-	-	-	T	49477914	C	T	49477914	3	4	275	1	0	0	0	0	1	0	0	0	6963	884	31	1	852	1	GYS1	19	49477914	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7949	49477914	9651069	4648	30335										
TRPM4	0	genome.wustl.edu	37	chr19	49684694	49684694	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacattgcccagagtgaactCtttcggggggacatccaatg	12	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	49684694	49684694	C	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	silent	c.1239	p.L413	0.996	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	246	0	0	170	24	12.37	-	-	-	A	49684694	C	A	49684694	2	1	275	1	0	0	0	0	0	0	0	1	16684	900	32	2		2	TRPM4	19	49684694	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	206780	49684694	9444289	4649	30336										
SLC6A16	0	genome.wustl.edu	37	chr19	49812343	49812343	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacttgaccccctgctagaGaccacacactcatattgtac	5	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	49812343	49812343	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.1019	p.S340F	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	203	0	0	209	31	12.81	-	-	-	A	49812343	G	A	49812343	3	1	275	1	0	0	0	0	1	0	0	0	14768	942	33	2	1215	2	SLC6A16	19	49812343	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	127649	49812343	9316640	4650	30337										
CPT1C	0	genome.wustl.edu	37	chr19	50213680	50213680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttggcaagagcttcatccGacgctgccacctctcttcag	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50213680	50213680	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.1670	p.R557Q	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	96	0	0	70	29	29.29	-	-	-	A	50213680	G	A	50213680	3	1	275	1	0	0	0	0	1	0	0	0	3863	1058	37	1	1720	1	CPT1C	19	50213680	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	401337	50213680	8915303	4651	30338										
TBC1D17	0	genome.wustl.edu	37	chr19	50387620	50387620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctactgcatgtatcacttcGacctcggtgggtgccaggcc	11	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50387620	50387620	G	A	SNP	TBC1D17	ENST00000221543	human	ensembl	69_37n	1	known	missense	c.1237	p.D413N	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946	41	0	0	21	5	19.23	-	-	-	A	50387620	G	A	50387620	3	1	275	1	0	0	0	0	1	0	0	0	15698	1058	37	1	1279	1	TBC1D17	19	50387620	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	173940	50387620	8741363	4652	30339										
KCNC3	0	genome.wustl.edu	37	chr19	50823855	50823855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggggggcacctcaccttttCggatggagccatcaggggaa	16	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50823855	50823855	C	T	SNP	KCNC3	ENST00000477616	human	ensembl	69_37n	-1	known	missense	c.2165	p.R722Q	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	27	0	0	26	10	27.03	-	-	-	T	50823855	C	T	50823855	3	4	275	1	0	0	0	0	1	0	0	0	8070	884	31	1	116	1	KCNC3	19	50823855	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	436235	50823855	8305128	4653	30340										
NR1H2	0	genome.wustl.edu	37	chr19	50881436	50881436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcccgaagaggaaccagagcGcaagcgaaagaagggcccag	14	11	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50881436	50881436	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	missense	c.212	p.R71H	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	42	0	0	25	4	13.79	-	-	-	A	50881436	G	A	50881436	3	1	275	1	0	0	0	0	1	0	0	0	10690	1087	38	1	222	1	NR1H2	19	50881436	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	57581	50881436	8247547	4654	30341										
NR1H2	0	genome.wustl.edu	37	chr19	50881949	50881949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagggctccggggaaggcGagggtgtccagctaacagcg	18	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50881949	50881949	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	missense	c.643	p.E215K	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	71	0	0	13	14	50	-	-	-	A	50881949	G	A	50881949	3	1	275	1	0	0	0	0	1	0	0	0	10690	1059	37	1	657	1	NR1H2	19	50881949	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	513	50881949	8247034	4655	30342										
MYBPC2	0	genome.wustl.edu	37	chr19	50944183	50944183	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaagaaagatgacgatGacctaggcatccccccggag	11	10	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	50944183	50944183	G	T	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.619	p.D207Y	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	106	0	0	67	36	34.95	-	-	-	T	50944183	G	T	50944183	3	4	275	1	0	0	0	0	1	0	0	0	10084	1290	45	2	649	2	MYBPC2	19	50944183	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	62234	50944183	8184800	4656	30343										
KLK3	0	genome.wustl.edu	37	chr19	51361469	51361469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgcctgtcagagcctgccGagctcacggatgctgtgaag	13	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51361469	51361469	G	A	SNP	KLK3	ENST00000326003	human	ensembl	69_37n	1	known	missense	c.391	p.E131K	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK3	HGNC	ENSG00000142515	152	0	0	99	42	29.79	-	-	-	A	51361469	G	A	51361469	3	1	275	1	0	0	0	0	1	0	0	0	8458	1059	37	1	405	1	KLK3	19	51361469	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	417286	51361469	7767514	4657	30344										
KLK5	0	genome.wustl.edu	37	chr19	51452217	51452217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgacatctttagtgggacGaattcttctgttcagtttga	9	7	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51452217	51452217	G	A	SNP	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	missense	c.490	p.R164C	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	76	0	0	63	20	23.81	-	-	-	A	51452217	G	A	51452217	3	1	275	1	0	0	0	0	1	0	0	0	8460	1058	37	1	403	1	KLK5	19	51452217	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	90748	51452217	7676766	4658	30345										
KLK13	0	genome.wustl.edu	37	chr19	51563286	51563286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggatagagtggacaacttCcctcacctgctcaccagctt	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51563286	51563286	C	T	SNP	KLK13	ENST00000156476	human	ensembl	69_37n	-1	known	missense	c.304	p.E102K	0.949	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	270	0	0	215	37	14.62	-	-	-	T	51563286	C	T	51563286	3	4	275	1	0	0	0	0	1	0	0	0	8454	864	30	2	541	2	KLK13	19	51563286	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	111069	51563286	7565697	4659	30346										
SIGLEC9	0	genome.wustl.edu	37	chr19	51628531	51628531	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttggggacccacataccaaGaattgcaccctgagcatcag	9	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51628531	51628531	G	A	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	silent	c.300	p.K100	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	190	0	0	143	16	10	-	-	-	A	51628531	G	A	51628531	2	1	275	1	0	0	0	0	0	0	0	1	14404	933	33	2		2	SIGLEC9	19	51628531	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	65245	51628531	7500452	4660	30347										
SIGLEC9	0	genome.wustl.edu	37	chr19	51633301	51633301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcggggacaggaggccactGacaccgagtactcggagatc	15	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51633301	51633301	G	T	SNP	SIGLEC9	ENST00000250360	human	ensembl	69_37n	1	known	missense	c.1357	p.D453Y	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	89	0	0	69	15	17.86	-	-	-	T	51633301	G	T	51633301	3	4	275	1	0	0	0	0	1	0	0	0	14404	1290	45	2	1383	2	SIGLEC9	19	51633301	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4770	51633301	7495682	4661	30348										
CD33	0	genome.wustl.edu	37	chr19	51742871	51742871	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgaggagctgcattatgcTtccctcaactttcatgggat	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	51742871	51742871	T	A	SNP	CD33	ENST00000262262	human	ensembl	69_37n	1	known	silent	c.1023	p.A341	0.037	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	669	0	0	639	85	11.72	-	-	-	A	51742871	T	A	51742871	2	1	275	1	0	0	0	0	0	0	0	1	3034	1596	56	5		5	CD33	19	51742871	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	109570	51742871	7386112	4662	30349										
ZNF577	0	genome.wustl.edu	37	chr19	52376754	52376754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctggagaaggctctcccGcacacactgcattcatgtgg	10	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52376754	52376754	G	A	SNP	ZNF577	ENST00000301399	human	ensembl	69_37n	-1	known	silent	c.489	p.C163	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	261	1	0.38	243	27	10	-	-	-	A	52376754	G	A	52376754	2	1	275	1	0	0	0	0	0	0	0	1	18105	1079	38	1		1	ZNF577	19	52376754	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	633883	52376754	6752229	4663	30350										
ZNF613	0	genome.wustl.edu	37	chr19	52448563	52448563	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtctcattaaccaccagaGaattcacacaggagagaaac	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52448563	52448563	G	T	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	missense	c.1427	p.R476I	0.970	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	158	0	0	191	29	13.18	-	-	-	T	52448563	G	T	52448563	3	4	275	1	0	0	0	0	1	0	0	0	18134	942	33	2	1441	2	ZNF613	19	52448563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	71809	52448563	6680420	4664	30351										
ZNF841	0	genome.wustl.edu	37	chr19	52569185	52569185	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattacatttataaggtttCtctccggtatgaattttccg	6	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52569185	52569185	C	A	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.1950	p.E650D	0.909	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	258	0	0	200	55	21.57	-	-	-	A	52569185	C	A	52569185	3	1	275	1	0	0	0	0	1	0	0	0	18282	912	32	2	828	2	ZNF841	19	52569185	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	120622	52569185	6559798	4665	30352										
ZNF616	0	genome.wustl.edu	37	chr19	52619912	52619912	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaacaaccattattacctgTcttctccgtttcattacatt	2	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52619912	52619912	T	C	SNP	ZNF616	ENST00000330123	human	ensembl	69_37n	-1	known	missense	c.505	p.T169A	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	237	0	0	296	37	11.08	-	-	-	C	52619912	T	C	52619912	3	2	275	1	0	0	0	0	1	0	0	0	18137	1667	58	5	1844	5	ZNF616	19	52619912	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	50727	52619912	6509071	4666	30353										
ZNF480	0	genome.wustl.edu	37	chr19	52825423	52825423	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaccttgcacgacatcaaaGaattcatgctgaagagaaac	7	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52825423	52825423	G	T	SNP	ZNF480	ENST00000468240	human	ensembl	69_37n	1	known	missense	c.920	p.R307I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464	130	0	0	98	34	25.56	-	-	-	T	52825423	G	T	52825423	3	4	275	1	0	0	0	0	1	0	0	0	18031	942	33	2	934	2	ZNF480	19	52825423	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	205511	52825423	6303560	4667	30354										
ZNF480	0	genome.wustl.edu	37	chr19	52825759	52825759	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatcttgcacgacatcgaaGaattcatactggagagaagc	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52825759	52825759	G	T	SNP	ZNF480	ENST00000468240	human	ensembl	69_37n	1	known	missense	c.1256	p.R419I	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464	151	0	0	197	25	11.26	-	-	-	T	52825759	G	T	52825759	3	4	275	1	0	0	0	0	1	0	0	0	18031	942	33	2	1270	2	ZNF480	19	52825759	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336	52825759	6303224	4668	30355										
ZNF528	0	genome.wustl.edu	37	chr19	52918803	52918803	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagcttgtgatacatcgaaGaatgcatactggagagaagc	11	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52918803	52918803	G	T	SNP	ZNF528	ENST00000360465	human	ensembl	69_37n	1	known	missense	c.698	p.R233I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555	90	0	0	93	17	15.45	-	-	-	T	52918803	G	T	52918803	3	4	275	1	0	0	0	0	1	0	0	0	18065	942	33	2	712	2	ZNF528	19	52918803	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	93044	52918803	6210180	4669	30356										
ZNF534	0	genome.wustl.edu	37	chr19	52941472	52941472	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggcaaagtcttcaatcaGaattcacaccttgcacaaca	6	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52941472	52941472	G	T	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.798	p.Q266H	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	74	0	0	71	27	27.55	-	-	-	T	52941472	G	T	52941472	3	4	275	1	0	0	0	0	1	0	0	0	18069	933	33	2	812	2	ZNF534	19	52941472	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22669	52941472	6187511	4670	30357										
ZNF534	0	genome.wustl.edu	37	chr19	52942121	52942121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagccttacaaatgtaacGaatgtggcaaggtcttcagt	10	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52942121	52942121	G	A	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.1447	p.E483K	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	121	0	0	145	21	12.57	-	-	-	A	52942121	G	A	52942121	3	1	275	1	0	0	0	0	1	0	0	0	18069	1059	37	1	1461	1	ZNF534	19	52942121	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	649	52942121	6186862	4671	30358										
ZNF534	0	genome.wustl.edu	37	chr19	52942161	52942161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagaattcaaaccttcaacGacataggaaaattcatactg	5	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	52942161	52942161	G	A	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.1487	p.R496Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	122	0	0	146	33	18.33	-	-	-	A	52942161	G	A	52942161	3	1	275	1	0	0	0	0	1	0	0	0	18069	1058	37	1	1501	1	ZNF534	19	52942161	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40	52942161	6186822	4672	30359										
ZNF578	0	genome.wustl.edu	37	chr19	53014224	53014224	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaacatcccaaagaatttCttgtaggcctgaaacacata	5	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53014224	53014224	C	A	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.590	p.S197Y	0.017	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	122	0	0	140	17	10.83	-	-	-	A	53014224	C	A	53014224	3	1	275	1	0	0	0	0	1	0	0	0	18106	913	32	2	600	2	ZNF578	19	53014224	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	72063	53014224	6114759	4673	30360										
ZNF578	0	genome.wustl.edu	37	chr19	53014316	53014316	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacaggaagtacacatgagaGaaaaatctttccaatgtaat	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53014316	53014316	G	T	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	nonsense	c.682	p.E228*	0.066	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	112	0	0	133	20	13.07	-	-	-	T	53014316	G	T	53014316	4	4	275	1	0	0	0	0	0	1	0	0	18106	943	33	2	692	2	ZNF578	19	53014316	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	92	53014316	6114667	4674	30361										
ZNF578	0	genome.wustl.edu	37	chr19	53014744	53014744	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcatactggaataaaaccTtacaagtgtaatgagtgtgg	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53014744	53014744	T	G	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	silent	c.1110	p.P370	0.378	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	276	0	0	189	58	23.48	-	-	-	G	53014744	T	G	53014744	2	3	275	1	0	0	0	0	0	0	0	1	18106	1596	56	5		5	ZNF578	19	53014744	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	428	53014744	6114239	4675	30362										
ZNF600	0	genome.wustl.edu	37	chr19	53270851	53270851	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgggtgcttcatggccatttCtttcatcttcttgacactga	8	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53270851	53270851	C	A	SNP	ZNF600	ENST00000338230	human	ensembl	69_37n	-1	known	missense	c.158	p.R53I	0.027	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190	522	1	0.19	429	53	11	-	-	-	A	53270851	C	A	53270851	3	1	275	1	0	0	0	0	1	0	0	0	18126	913	32	2	2014	2	ZNF600	19	53270851	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	256107	53270851	5858132	4676	30363										
ZNF468	0	genome.wustl.edu	37	chr19	53344759	53344759	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctcaccagtgtgacatCtacgatggcaggcaaggtat	11	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53344759	53344759	C	A	SNP	ZNF468	ENST00000243639	human	ensembl	69_37n	-1	known	missense	c.788	p.R263I	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604	261	0	0	257	39	13.18	-	-	-	A	53344759	C	A	53344759	3	1	275	1	0	0	0	0	1	0	0	0	18024	913	32	2	784	2	ZNF468	19	53344759	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	73908	53344759	5784224	4677	30364										
ZNF320	0	genome.wustl.edu	37	chr19	53384766	53384766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaattctagtatgttttgCcaggtgtgaatcatgcttaa	10	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53384766	53384766	C	T	SNP	ZNF320	ENST00000391781	human	ensembl	69_37n	-1	known	missense	c.613	p.A205T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	422	2	0.47	408	48	10.53	-	-	-	T	53384766	C	T	53384766	3	4	275	1	0	0	0	0	1	0	0	0	17935	739	26	4	920	4	ZNF320	19	53384766	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	40007	53384766	5744217	4678	30365										
ZNF845	0	genome.wustl.edu	37	chr19	53855216	53855216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcatcccttgtataccatCgtagacttcatactggagag	8	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53855216	53855216	C	T	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.1288	p.R430C	0.107	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	94	0	0	61	39	39	-	-	-	T	53855216	C	T	53855216	3	4	275	1	0	0	0	0	1	0	0	0	18284	884	31	1	1298	1	ZNF845	19	53855216	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	470450	53855216	5273767	4679	30366										
ZNF761	0	genome.wustl.edu	37	chr19	53958717	53958717	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttgaaagacataggataaTtcatactgaagagaaaccat	7	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	53958717	53958717	T	G	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.365	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	99	0	0	102	18	14.88	-	-	-	G	53958717	T	G	53958717	1	3	275	0	1	0	0	0	0	0	0	0	18230	1493	52	5		5	ZNF761	19	53958717	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	103501	53958717	5170266	4680	30367										
ZNF331	0	genome.wustl.edu	37	chr19	54080796	54080796	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaccggtgagaagcctcacGaatgtaaggagtgtgggaag	15	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	54080796	54080796	G	T	SNP	ZNF331	ENST00000253144	human	ensembl	69_37n	1	known	nonsense	c.982	p.E328*	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844	134	0	0	120	20	14.29	-	-	-	T	54080796	G	T	54080796	4	4	275	1	0	0	0	0	0	1	0	0	17945	1059	37	3	992	3	ZNF331	19	54080796	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	122079	54080796	5048187	4681	30368										
ZNF331	0	genome.wustl.edu	37	chr19	54080889	54080889	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagccgtacaagtgcacaGaatgtgggaaggccttcaat	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	54080889	54080889	G	T	SNP	ZNF331	ENST00000253144	human	ensembl	69_37n	1	known	nonsense	c.1075	p.E359*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844	154	0	0	108	21	16.28	-	-	-	T	54080889	G	T	54080889	4	4	275	1	0	0	0	0	0	1	0	0	17945	943	33	2	1085	2	ZNF331	19	54080889	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	93	54080889	5048094	4682	30369										
DPRX	0	genome.wustl.edu	37	chr19	54137844	54137844	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcactaagaagcaactggaaGatctgaacatcttgttcaat	7	8	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	54137844	54137844	G	T	SNP	DPRX	ENST00000376650	human	ensembl	69_37n	1	known	missense	c.88	p.D30Y	0.005	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DPRX	HGNC	ENSG00000204595	330	1	0.3	288	102	26.15	-	-	-	T	54137844	G	T	54137844	3	4	275	1	0	0	0	0	1	0	0	0	4773	942	33	2	94	2	DPRX	19	54137844	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	56955	54137844	4991139	4683	30370										
NLRP12	0	genome.wustl.edu	37	chr19	54312884	54312884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctgcggagcacctcgcgcGgtcttccccgtccgcgctgt	12	18	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	54312884	54312884	G	A	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	missense	c.2029	p.R677C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	36	0	0	15	6	27.27	-	-	-	A	54312884	G	A	54312884	3	1	275	1	0	0	0	0	1	0	0	0	10546	1116	39	1	1284	1	NLRP12	19	54312884	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	175040	54312884	4816099	4684	30371										
MBOAT7	0	genome.wustl.edu	37	chr19	54692350	54692350	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccactagatacgtccattCttcaggcgacatggtctggg	10	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	54692350	54692350	C	A	SNP	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	nonsense	c.13	p.E5*	0.999	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	149	0	0	111	13	10.48	-	-	-	A	54692350	C	A	54692350	4	1	275	1	0	0	0	0	0	1	0	0	9429	922	32	2	1437	2	MBOAT7	19	54692350	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	379466	54692350	4436633	4685	30372										
LILRA1	0	genome.wustl.edu	37	chr19	55106251	55106251	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taccgtctgtatagagaaaaGaaaacagcaccctggattac	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55106251	55106251	G	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.192	p.K64N	0.001	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	251	0	0	134	17	11.18	-	-	-	T	55106251	G	T	55106251	3	4	275	1	0	0	0	0	1	0	0	0	8839	933	33	2	202	2	LILRA1	19	55106251	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	413901	55106251	4022732	4686	30373										
LILRA1	0	genome.wustl.edu	37	chr19	55107211	55107211	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagctacgacagatttgttCtgtataaggagggagaacgt	12	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55107211	55107211	C	A	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.769	p.L257M	0.011	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	188	0	0	93	22	19.13	-	-	-	A	55107211	C	A	55107211	3	1	275	1	0	0	0	0	1	0	0	0	8839	912	32	2	787	2	LILRA1	19	55107211	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	960	55107211	4021772	4687	30374										
KIR3DL3	0	genome.wustl.edu	37	chr19	55246790	55246790	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctttgctatcctcctcttCtttctccttcatcgctggtg	5	16	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55246790	55246790	C	A	SNP	KIR3DL3	ENST00000291860	human	ensembl	69_37n	1	known	missense	c.1020	p.F340L	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2	-	no_errors	KIR3DL3	HGNC	ENSG00000242019	1146	0	0	480	524	52.14	-	-	-	A	55246790	C	A	55246790	3	1	275	1	0	0	0	0	1	0	0	0	8375	912	32	2	1042	2	KIR3DL3	19	55246790	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	139579	55246790	3882193	4688	30375										
KIR3DL1	0	genome.wustl.edu	37	chr19	55329841	55329841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggaggacacgtgactcttCggtgtcactatcgtcatagg	13	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55329841	55329841	C	T	SNP	KIR3DL1	ENST00000402254	human	ensembl	69_37n	1	known	missense	c.142	p.R48W	0.002	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633	429	0	0	320	78	19.6	-	-	-	T	55329841	C	T	55329841	3	4	275	1	0	0	0	0	1	0	0	0	8373	875	31	1	152	1	KIR3DL1	19	55329841	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	83051	55329841	3799142	4689	30376										
KIR2DS4	0	genome.wustl.edu	37	chr19	55351098	55351098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagatgcttcggctctttccGtgacgctccctacgagtggt	11	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55351098	55351098	G	A	SNP	KIR2DS4	ENST00000339924	human	ensembl	69_37n	1	known	missense	c.586	p.V196M	0.004	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIR2DS4	HGNC	ENSG00000221957	1011	2	0.2	836	100	10.64	-	-	-	A	55351098	G	A	55351098	3	1	275	1	0	0	0	0	1	0	0	0	8372	1145	40	1	600	1	KIR2DS4	19	55351098	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21257	55351098	3777885	4690	30377										
NLRP7	0	genome.wustl.edu	37	chr19	55451494	55451494	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtcatcctgcaattcaggCcagtctttggagatcagctc	9	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55451494	55451494	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	nonsense	c.777	p.W259*	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	164	0	0	90	36	28.57	-	-	-	T	55451494	C	T	55451494	4	4	275	1	0	0	0	0	0	1	0	0	10554	740	26	4	2452	4	NLRP7	19	55451494	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	100396	55451494	3677489	4691	30378										
NLRP2	0	genome.wustl.edu	37	chr19	55497648	55497648	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttcccgcattgtgtgaggtCttgagacatccagaatgtaa	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55497648	55497648	C	A	SNP	NLRP2	ENST00000540005	human	ensembl	69_37n	1	putative	missense	c.544	p.L182I	0.014	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRP2	HGNC	ENSG00000022556	104	0	0	118	15	11.28	-	-	-	A	55497648	C	A	55497648	3	1	275	1	0	0	0	0	1	0	0	0	10549	900	32	2	2357	2	NLRP2	19	55497648	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	46154	55497648	3631335	4692	30379										
NLRP2	0	genome.wustl.edu	37	chr19	55497690	55497690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcgatatctcgggtatatCtcttaatcattaaaatcctt	5	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	55497690	55497690	C	A	SNP	NLRP2	ENST00000540005	human	ensembl	69_37n	1	putative	missense	c.586	p.L196I	0.065	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRP2	HGNC	ENSG00000022556	72	0	0	84	22	20.75	-	-	-	A	55497690	C	A	55497690	3	1	275	1	0	0	0	0	1	0	0	0	10549	928	32	2		2	NLRP2	19	55497690	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42	55497690	3631293	4693	30380										
ZNF579	0	genome.wustl.edu	37	chr19	56089407	56089407	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgagtggtcttggctgtcGaaacaggaggcgctgaggaa	17	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56089407	56089407	G	A	SNP	ZNF579	ENST00000325421	human	ensembl	69_37n	-1	known	silent	c.1599	p.F533	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF579	HGNC	ENSG00000218891	59	0	0	9	4	30.77	-	-	-	A	56089407	G	A	56089407	2	1	275	1	0	0	0	0	0	0	0	1	18107	1049	37	1		1	ZNF579	19	56089407	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	591717	56089407	3039576	4694	30381										
NLRP9	0	genome.wustl.edu	37	chr19	56235502	56235502	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcatgtccaaagtacacaGaagtaaatctgcaaaagatt	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56235502	56235502	G	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.2003	p.S668Y	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	79	0	0	63	30	32.26	-	-	-	T	56235502	G	T	56235502	3	4	275	1	0	0	0	0	1	0	0	0	10556	942	33	2	996	2	NLRP9	19	56235502	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	146095	56235502	2893481	4695	30382										
NLRP11	0	genome.wustl.edu	37	chr19	56329530	56329530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcaaagtcagtagaatccGattctgccatcttgcttctc	8	11	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56329530	56329530	G	A	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.11	p.S4L	0.000	superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	255	0	0	186	57	23.36	-	-	-	A	56329530	G	A	56329530	3	1	275	1	0	0	0	0	1	0	0	0	10545	1059	37	1	3126	1	NLRP11	19	56329530	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	94028	56329530	2799453	4696	30383										
NLRP13	0	genome.wustl.edu	37	chr19	56424034	56424034	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtcccctgtgaaccctgtAatttgtacaaagcatggatt	8	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56424034	56424034	A	G	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	silent	c.1149	p.I383	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	201	0	0	140	24	14.63	-	-	-	G	56424034	A	G	56424034	2	3	275	1	0	0	0	0	0	0	0	1	10547	358	13	5		5	NLRP13	19	56424034	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	94504	56424034	2704949	4697	30384										
NLRP13	0	genome.wustl.edu	37	chr19	56424580	56424580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgtattacggatatatacGtggtctttaggccaactgat	10	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56424580	56424580	G	A	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	silent	c.603	p.H201	0.002	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	173	0	0	137	20	12.66	-	-	-	A	56424580	G	A	56424580	2	1	275	1	0	0	0	0	0	0	0	1	10547	1136	40	1		1	NLRP13	19	56424580	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	546	56424580	2704403	4698	30385										
ZSCAN5B	0	genome.wustl.edu	37	chr19	56701489	56701489	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggactcgctggtgaactcGgaggtctgagggctgcaaga	17	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56701489	56701489	G	A	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	nonsense	c.1195	p.R399*	0.021	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	343	0	0	323	53	14.06	-	-	-	A	56701489	G	A	56701489	4	1	275	1	0	0	0	0	0	1	0	0	18330	1124	39	1	296	1	ZSCAN5B	19	56701489	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	276909	56701489	2427494	4699	30386										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56734058	56734058	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtctgcttgggtctcagaGactttgggtcacctgttacg	13	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56734058	56734058	G	T	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.641	p.S214Y	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	460	0	0	391	53	11.94	-	-	-	T	56734058	G	T	56734058	3	4	275	1	0	0	0	0	1	0	0	0	18329	942	33	2	857	2	ZSCAN5A	19	56734058	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	32569	56734058	2394925	4700	30387										
ZNF582	0	genome.wustl.edu	37	chr19	56896271	56896271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttctacatttattatacCcaaaaggtttttctctagta	3	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56896271	56896271	C	T	SNP	ZNF582	ENST00000301310	human	ensembl	69_37n	-1	known	missense	c.515	p.G172E	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	133	0	0	105	24	18.6	-	-	-	T	56896271	C	T	56896271	3	4	275	1	0	0	0	0	1	0	0	0	18110	623	22	4	1042	4	ZNF582	19	56896271	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	162213	56896271	2232712	4701	30388										
ZNF583	0	genome.wustl.edu	37	chr19	56934722	56934722	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccttactcttcatcagaGaattcatactggagagaaac	6	10	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56934722	56934722	G	T	SNP	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	missense	c.695	p.R232I	0.936	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	85	0	0	73	11	13.1	-	-	-	T	56934722	G	T	56934722	3	4	275	1	0	0	0	0	1	0	0	0	18111	942	33	2	709	2	ZNF583	19	56934722	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	38451	56934722	2194261	4702	30389										
ZNF583	0	genome.wustl.edu	37	chr19	56935058	56935058	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcttgctcagcatcagaGaattcatacaggagagaaac	8	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	56935058	56935058	G	T	SNP	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	missense	c.1031	p.R344I	0.968	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	735	0	0	442	88	16.6	-	-	-	T	56935058	G	T	56935058	3	4	275	1	0	0	0	0	1	0	0	0	18111	942	33	2	1045	2	ZNF583	19	56935058	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	336	56935058	2193925	4703	30390										
ZFP28	0	genome.wustl.edu	37	chr19	57065350	57065350	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcataatcgtgattcaattaAaaattttcaaaaaagttcag	4	5	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57065350	57065350	A	C	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	missense	c.1196	p.K399T	0.917	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	72	0	0	69	10	12.66	-	-	-	C	57065350	A	C	57065350	3	2	275	1	0	0	0	0	1	0	0	0	17738	14	1	5	1226	5	ZFP28	19	57065350	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	130292	57065350	2063633	4704	30391										
ZFP28	0	genome.wustl.edu	37	chr19	57065660	57065660	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatactatcatactggggaGaaaccctttgattgcatcga	9	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57065660	57065660	G	T	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	missense	c.1506	p.E502D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	136	0	0	140	18	11.39	-	-	-	T	57065660	G	T	57065660	3	4	275	1	0	0	0	0	1	0	0	0	17738	933	33	2	1536	2	ZFP28	19	57065660	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	310	57065660	2063323	4705	30392										
ZNF835	0	genome.wustl.edu	37	chr19	57176545	57176545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caactctgcgccctggagggCgacgctcaagagtccctcca	11	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57176545	57176545	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	69_37n	-1	known	missense	c.22	p.A8T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	75	0	0	46	11	19.3	-	-	-	T	57176545	C	T	57176545	3	4	275	1	0	0	0	0	1	0	0	0	18279	768	27	1	1593	1	ZNF835	19	57176545	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	110885	57176545	1952438	4706	30393										
PEG3	0	genome.wustl.edu	37	chr19	57326524	57326524	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggtcatccttctgagggtCttccatgtctgagccttgaa	11	10	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57326524	57326524	C	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.3286	p.D1096Y	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	371	0	0	361	57	13.64	-	-	-	A	57326524	C	A	57326524	3	1	275	1	0	0	0	0	1	0	0	0	11793	913	32	2	1484	2	PEG3	19	57326524	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	149979	57326524	1802459	4707	30394										
ZIM3	0	genome.wustl.edu	37	chr19	57647189	57647189	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgaactgaataactttctAcaggcattacatttcagttg	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57647189	57647189	A	G	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	silent	c.516	p.C172	0.412	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	229	0	0	183	75	29.07	-	-	-	G	57647189	A	G	57647189	2	3	275	1	0	0	0	0	0	0	0	1	17781	389	14	5		5	ZIM3	19	57647189	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	320665	57647189	1481794	4708	30395										
ZNF805	0	genome.wustl.edu	37	chr19	57765160	57765160	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagagtgtggcaaagcctttCgagataggccaggtttcatt	12	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57765160	57765160	C	T	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	nonsense	c.973	p.R325*	0.085	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	120	0	0	100	19	15.97	-	-	-	T	57765160	C	T	57765160	4	4	275	1	0	0	0	0	0	1	0	0	18265	876	31	1	987	1	ZNF805	19	57765160	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	117971	57765160	1363823	4709	30396										
ZNF17	0	genome.wustl.edu	37	chr19	57931006	57931006	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcatttctgttttaggttGttggcatggagccaaggatg	14	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57931006	57931006	G	C	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.146	p.C49S	0.503	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	197	0	0	140	57	28.93	-	-	-	C	57931006	G	C	57931006	3	2	275	1	0	0	0	0	1	0	0	0	17839	1377	48	4	156	4	ZNF17	19	57931006	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	165846	57931006	1197977	4710	30397										
VN1R1	0	genome.wustl.edu	37	chr19	57967635	57967635	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttgtgtccagtgaacaAaattaagttataaaaacaaa	6	6	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57967635	57967635	A	G	SNP	VN1R1	ENST00000321039	human	ensembl	69_37n	-1	known	silent	c.220	p.L74	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R1	HGNC	ENSG00000178201	113	0	0	104	14	11.86	-	-	-	G	57967635	A	G	57967635	2	3	275	1	0	0	0	0	0	0	0	1	17275	11	1	5		5	VN1R1	19	57967635	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	36629	57967635	1161348	4711	30398										
ZNF772	0	genome.wustl.edu	37	chr19	57985312	57985312	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttcccacattcactgcatTtgtaatgcctttttccacag	4	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	57985312	57985312	T	G	SNP	ZNF772	ENST00000343280	human	ensembl	69_37n	-1	known	missense	c.800	p.K267T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128	125	0	0	95	42	30.66	-	-	-	G	57985312	T	G	57985312	3	3	275	1	0	0	0	0	1	0	0	0	18238	1841	64	5	673	5	ZNF772	19	57985312	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	17677	57985312	1143671	4712	30399										
ZNF773	0	genome.wustl.edu	37	chr19	58017888	58017888	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggagttgcagagtccaccTatcagagaagtccttgcaaa	11	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58017888	58017888	T	C	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	1	known	missense	c.425	p.L142P	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	355	0	0	291	33	10.19	-	-	-	C	58017888	T	C	58017888	3	2	275	1	0	0	0	0	1	0	0	0	18239	1522	53	5	439	5	ZNF773	19	58017888	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	32576	58017888	1111095	4713	30400										
ZNF773	0	genome.wustl.edu	37	chr19	58018249	58018249	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttagccgtaatgctgacctCattcaacaccagagagttca	7	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58018249	58018249	C	A	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	1	known	silent	c.786	p.L262	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	376	0	0	331	41	11.02	-	-	-	A	58018249	C	A	58018249	2	1	275	1	0	0	0	0	0	0	0	1	18239	813	29	2		2	ZNF773	19	58018249	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	361	58018249	1110734	4714	30401										
ZNF154	0	genome.wustl.edu	37	chr19	58213187	58213187	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcttgatccagtgtgaactCtctggtgttttcggagactg	12	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58213187	58213187	C	A	SNP	ZNF154	ENST00000426889	human	ensembl	69_37n	-1	known	missense	c.1130	p.R377I	0.798	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF154	HGNC	ENSG00000179909	244	0	0	202	26	11.35	-	-	-	A	58213187	C	A	58213187	3	1	275	1	0	0	0	0	1	0	0	0	17831	913	32	2	187	2	ZNF154	19	58213187	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	194938	58213187	915796	4715	30402										
ZNF671	0	genome.wustl.edu	37	chr19	58232505	58232505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgaagaatttcccacattCgttacactcataaggccttt	6	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58232505	58232505	C	T	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	missense	c.949	p.E317K	0.014	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	94	0	0	67	30	30.93	-	-	-	T	58232505	C	T	58232505	3	4	275	1	0	0	0	0	1	0	0	0	18174	893	31	1	659	1	ZNF671	19	58232505	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	19318	58232505	896478	4716	30403										
ZNF587	0	genome.wustl.edu	37	chr19	58352477	58352477	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagaatgagcacattggagaGaaaccctacagagggagtgt	13	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58352477	58352477	G	T	SNP	ZNF587	ENST00000442832	human	ensembl	69_37n	1	known	missense	c.435	p.E145D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	202	0	0	142	63	30.73	-	-	-	T	58352477	G	T	58352477	3	4	275	1	0	0	0	0	1	0	0	0	18116	957	33	2		2	ZNF587	19	58352477	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	119972	58352477	776506	4717	30404										
ZNF417	0	genome.wustl.edu	37	chr19	58421205	58421205	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctctgacactctttctgtaGaatttctctccaatatgctg	5	11	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58421205	58421205	G	T	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.441	p.F147L	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	59	0	0	38	15	28.3	-	-	-	T	58421205	G	T	58421205	3	4	275	1	0	0	0	0	1	0	0	0	17990	933	33	2	1290	2	ZNF417	19	58421205	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	68728	58421205	707778	4718	30405										
ZNF418	0	genome.wustl.edu	37	chr19	58437969	58437969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtatgaactctccgatgtCgaaggagggaacagctttga	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58437969	58437969	C	T	SNP	ZNF418	ENST00000425570	human	ensembl	69_37n	-1	known	missense	c.1643	p.R548Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	138	0	0	145	23	13.69	-	-	-	T	58437969	C	T	58437969	3	4	275	1	0	0	0	0	1	0	0	0	17991	884	31	1	454	1	ZNF418	19	58437969	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16764	58437969	691014	4719	30406										
ZNF418	0	genome.wustl.edu	37	chr19	58438323	58438323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttcctaaggtgtccctttCgactaaaagatttcccacat	7	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58438323	58438323	C	T	SNP	ZNF418	ENST00000425570	human	ensembl	69_37n	-1	known	missense	c.1289	p.R430Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	199	0	0	177	59	24.89	-	-	-	T	58438323	C	T	58438323	3	4	275	1	0	0	0	0	1	0	0	0	17991	884	31	1	808	1	ZNF418	19	58438323	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	354	58438323	690660	4720	30407										
C19orf18	0	genome.wustl.edu	37	chr19	58470070	58470070	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcttaatatttttgcttCtttttgatataataactaaa	2	5	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58470070	58470070	C	A	SNP	C19orf18	ENST00000314391	human	ensembl	69_37n	-1	known	missense	c.548	p.R183I	0.469	NULL	NULL	-	no_errors	C19orf18	HGNC	ENSG00000177025	188	0	0	124	96	43.64	-	-	-	A	58470070	C	A	58470070	3	1	275	1	0	0	0	0	1	0	0	0	1928	913	32	2	103	2	C19orf18	19	58470070	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	31747	58470070	658913	4721	30408										
ZNF606	0	genome.wustl.edu	37	chr19	58490989	58490989	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaaggatgagaaataaaaGatattctcatattctttgta	6	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58490989	58490989	G	T	SNP	ZNF606	ENST00000341164	human	ensembl	69_37n	-1	known	silent	c.1059	p.I353	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704	242	0	0	226	27	10.67	-	-	-	T	58490989	G	T	58490989	2	4	275	1	0	0	0	0	0	0	0	1	18128	932	33	2		2	ZNF606	19	58490989	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20919	58490989	637994	4722	30409										
ZNF274	0	genome.wustl.edu	37	chr19	58724115	58724115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccggaacccaagatacttttCtgtgcataagaaaatccata	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58724115	58724115	C	T	SNP	ZNF274	ENST00000326804	human	ensembl	69_37n	1	known	missense	c.1565	p.S522F	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606	139	0	0	77	10	11.49	-	-	-	T	58724115	C	T	58724115	3	4	275	1	0	0	0	0	1	0	0	0	17905	913	32	2	1593	2	ZNF274	19	58724115	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	233126	58724115	404868	4723	30410										
ZNF324B	0	genome.wustl.edu	37	chr19	58965130	58965130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgggggctcctggacacagCgcagagggccctgtaccgcc	16	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	58965130	58965130	C	T	SNP	ZNF324B	ENST00000336614	human	ensembl	69_37n	1	known	missense	c.62	p.A21V	0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324B	HGNC	ENSG00000249471	167	0	0	117	22	15.83	-	-	-	T	58965130	C	T	58965130	3	4	275	1	0	0	0	0	1	0	0	0	17941	768	27	1	64	1	ZNF324B	19	58965130	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	241015	58965130	163853	4724	30411										
CHMP2A	0	genome.wustl.edu	37	chr19	59063683	59063683	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcatggcttgtgccatcgaGttgttggacttgagtgtctg	13	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	19	59063683	59063683	G	A	SNP	CHMP2A	ENST00000312547	human	ensembl	69_37n	-1	known	silent	c.291	p.N97	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP2A	HGNC	ENSG00000130724	58	0	0	50	13	20	-	-	-	A	59063683	G	A	59063683	2	1	275	1	0	0	0	0	0	0	0	1	3383	1020	36	4		4	CHMP2A	19	59063683	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98553	59063683	65300	4725	30412										
C20orf96	0	genome.wustl.edu	37	chr20	256619	256619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatcacatacttgggtctccGaagcagaacatcctcaaata	7	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	256619	256619	G	A	SNP	C20orf96	ENST00000360321	human	ensembl	69_37n	-1	known	missense	c.1021	p.R341W	1.000	NULL	NULL	-	no_errors	C20orf96	HGNC	ENSG00000196476	90	0	0	51	9	15	-	-	-	A	256619	G	A	256619	3	1	275	1	0	0	0	0	1	0	0	0	2142	1057	37	1	78	1	C20orf96	20	256619	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		256619	62768901	4726	30413										
NSFL1C	0	genome.wustl.edu	37	chr20	1435754	1435754	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacaatctgctgtccacttCtctctgagcccccagcataa	5	16	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	1435754	1435754	C	A	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.308	p.R103I	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	166	0	0	129	23	15.13	-	-	-	A	1435754	C	A	1435754	3	1	275	1	0	0	0	0	1	0	0	0	10745	913	32	2	834	2	NSFL1C	20	1435754	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1179135	1435754	61589766	4727	30414										
SIRPG	0	genome.wustl.edu	37	chr20	1616867	1616867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaagttggcagtcccacGaagagggtccccctgcaagg	13	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	1616867	1616867	G	A	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.715	p.R239C	0.985	pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	424	0	0	244	40	14.04	-	-	-	A	1616867	G	A	1616867	3	1	275	1	0	0	0	0	1	0	0	0	14425	1058	37	1	460	1	SIRPG	20	1616867	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181113	1616867	61408653	4728	30415										
TMC2	0	genome.wustl.edu	37	chr20	2542639	2542639	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagccctggcccatggcgaaGaagctgacagagctcaggtg	14	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	2542639	2542639	G	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	silent	c.537	p.K179	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	113	0	0	67	13	16.05	-	-	-	A	2542639	G	A	2542639	2	1	275	1	0	0	0	0	0	0	0	1	16080	933	33	2		2	TMC2	20	2542639	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	925772	2542639	60482881	4729	30416										
TMC2	0	genome.wustl.edu	37	chr20	2582814	2582814	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaatatccatctgacaaGatttcttcgtgtcctggcca	7	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	2582814	2582814	G	T	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.1280	p.R427I	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	679	0	0	597	104	14.84	-	-	-	T	2582814	G	T	2582814	3	4	275	1	0	0	0	0	1	0	0	0	16080	942	33	2	1322	2	TMC2	20	2582814	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	40175	2582814	60442706	4730	30417										
CPXM1	0	genome.wustl.edu	37	chr20	2777701	2777701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaagtctagagggtcagagGatcccgacgcaggggcctca	15	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	2777701	2777701	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.872	p.S291F	0.616	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	358	1	0.28	170	21	10.88	-	-	-	A	2777701	G	A	2777701	3	1	275	1	0	0	0	0	1	0	0	0	3867	1174	41	2	1364	2	CPXM1	20	2777701	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	194887	2777701	60247819	4731	30418										
DDRGK1	0	genome.wustl.edu	37	chr20	3180667	3180667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttctgctcctcctccaggcGaagccgctcctcctccttct	6	20	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	3180667	3180667	G	A	SNP	DDRGK1	ENST00000354488	human	ensembl	69_37n	-1	known	missense	c.490	p.R164C	0.999	pfam_DDRGK_dom-contain	pfam_DDRGK_dom-contain	-	no_errors	DDRGK1	HGNC	ENSG00000198171	76	0	0	58	33	36.26	-	-	-	A	3180667	G	A	3180667	3	1	275	1	0	0	0	0	1	0	0	0	4369	1058	37	1	478	1	DDRGK1	20	3180667	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	402966	3180667	59844853	4732	30419										
C20orf194	0	genome.wustl.edu	37	chr20	3274857	3274857	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggaagatgggtccgcatCacaggctcctggctaatgct	12	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	3274857	3274857	C	A	SNP	C20orf194	ENST00000252032	human	ensembl	69_37n	-1	known	silent	c.2166	p.V722	0.999	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854	117	1	0.85	71	30	29.7	-	-	-	A	3274857	C	A	3274857	2	1	275	1	0	0	0	0	0	0	0	1	2119	813	29	2		2	C20orf194	20	3274857	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	94190	3274857	59750663	4733	30420										
SIGLEC1	0	genome.wustl.edu	37	chr20	3675137	3675137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggcccagtcgtccagggCctgtgtccatcagggtagtg	16	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	3675137	3675137	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	missense	c.2987	p.G996D	0.853	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	49	0	0	22	4	15.38	-	-	-	T	3675137	C	T	3675137	3	4	275	1	0	0	0	0	1	0	0	0	14394	739	26	4	2182	4	SIGLEC1	20	3675137	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	400280	3675137	59350383	4734	30421										
PROKR2	0	genome.wustl.edu	37	chr20	5283060	5283060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagccgcttgcgaatctgctCcgtctggaacccagggactg	12	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	5283060	5283060	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	69_37n	-1	known	missense	c.781	p.E261K	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292	65	0	0	38	13	25	-	-	-	T	5283060	C	T	5283060	3	4	275	1	0	0	0	0	1	0	0	0	12634	864	30	2	376	2	PROKR2	20	5283060	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1607923	5283060	57742460	4735	30422										
TRMT6	0	genome.wustl.edu	37	chr20	5923388	5923388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaacatgctgttgctgcccGaacaggtcctcctccagggt	10	13	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	5923388	5923388	G	A	SNP	TRMT6	ENST00000203001	human	ensembl	69_37n	-1	known	missense	c.712	p.R238W	1.000	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	-	no_errors	TRMT6	HGNC	ENSG00000089195	121	0	0	78	12	13.33	-	-	-	A	5923388	G	A	5923388	3	1	275	1	0	0	0	0	1	0	0	0	16664	1057	37	1	801	1	TRMT6	20	5923388	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	640328	5923388	57102132	4736	30423										
FERMT1	0	genome.wustl.edu	37	chr20	6093147	6093147	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaacctgaagctgttggaGaactctccaggtttagaata	10	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	6093147	6093147	G	T	SNP	FERMT1	ENST00000217289	human	ensembl	69_37n	-1	known	missense	c.509	p.S170Y	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT1	HGNC	ENSG00000101311	694	0	0	626	103	14.13	-	-	-	T	6093147	G	T	6093147	3	4	275	1	0	0	0	0	1	0	0	0	5863	942	33	2	1572	2	FERMT1	20	6093147	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	169759	6093147	56932373	4737	30424										
HAO1	0	genome.wustl.edu	37	chr20	7864303	7864303	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgtcgatgactttcacattCtggcaccctgaaaaaataat	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	7864303	7864303	C	T	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	silent	c.1050	p.Q350	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	576	0	0	298	99	24.87	-	-	-	T	7864303	C	T	7864303	2	4	275	1	0	0	0	0	0	0	0	1	7002	912	32	2		2	HAO1	20	7864303	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1771156	7864303	55161217	4738	30425										
HAO1	0	genome.wustl.edu	37	chr20	7886801	7886801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagtagagaaataaacgaacCtctcaaaatgccctttgcaa	6	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	7886801	7886801	C	A	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	missense	c.721	p.G241C	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	259	0	0	147	63	30	-	-	-	A	7886801	C	A	7886801	3	1	275	1	0	0	0	0	1	0	0	0	7002	695	24	4	411	4	HAO1	20	7886801	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22498	7886801	55138719	4739	30426										
PLCB1	0	genome.wustl.edu	37	chr20	8769281	8769281	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttccattgtgacttcagaGaaaagaaagaattaaagaag	8	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	8769281	8769281	G	T	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	nonsense	c.3190	p.E1064*	1.000	pirsf_PLC-beta,pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	348	0	0	176	69	28.16	-	-	-	T	8769281	G	T	8769281	4	4	275	1	0	0	0	0	0	1	0	0	12101	956	33	2	3304	2	PLCB1	20	8769281	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	882480	8769281	54256239	4740	30427										
PLCB4	0	genome.wustl.edu	37	chr20	9351855	9351855	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgtttctttcttttctgCcctagtattactagaacatt	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	9351855	9351855	C	T	SNP	PLCB4	ENST00000464199	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	PLCB4	HGNC	ENSG00000101333	309	0	0	279	36	11.43	-	-	-	T	9351855	C	T	9351855	1	4	275	0	1	0	0	0	0	0	0	0	12104	754	26	4		4	PLCB4	20	9351855	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	582574	9351855	53673665	4741	30428										
PLCB4	0	genome.wustl.edu	37	chr20	9374234	9374234	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctctttctgtttctctctaGcttgaaccaggcagggcttt	9	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	9374234	9374234	G	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	splice_site	c.1324-1	e15-1	1.000	-	-	-	no_errors	PLCB4	HGNC	ENSG00000101333	139	0	0	124	15	10.79	-	-	-	T	9374234	G	T	9374234	5	4	275	1	0	0	0	0	0	0	1	0	12104	985	34	4	1381	4	PLCB4	20	9374234	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22379	9374234	53651286	4742	30429										
PLCB4	0	genome.wustl.edu	37	chr20	9376258	9376258	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacgataatgaagaggagatCgaaagtggtgagctgtttgc	15	4	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	9376258	9376258	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	silent	c.1503	p.I501	1.000	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	193	0	0	181	62	25.51	-	-	-	T	9376258	C	T	9376258	2	4	275	1	0	0	0	0	0	0	0	1	12104	874	31	1		1	PLCB4	20	9376258	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2024	9376258	53649262	4743	30430										
PLCB4	0	genome.wustl.edu	37	chr20	9416242	9416242	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcagatccaaagaaatttCtctcaattacagaaaagaga	5	7	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	9416242	9416242	C	A	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2524	p.L842I	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	189	0	0	166	25	13.02	-	-	-	A	9416242	C	A	9416242	3	1	275	1	0	0	0	0	1	0	0	0	12104	913	32	2	2662	2	PLCB4	20	9416242	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	39984	9416242	53609278	4744	30431										
PLCB4	0	genome.wustl.edu	37	chr20	9416256	9416256	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatttctctcaattacagaAaagagagcagaccaaatgag	7	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	9416256	9416256	A	C	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2538	p.E846D	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	193	0	0	140	53	27.46	-	-	-	C	9416256	A	C	9416256	3	2	275	1	0	0	0	0	1	0	0	0	12104	11	1	5	2676	5	PLCB4	20	9416256	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	14	9416256	53609264	4745	30432										
MKKS	0	genome.wustl.edu	37	chr20	10385934	10385934	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acatatgaaagatccaaaatCaaattggctgtctctacagc	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	10385934	10385934	C	T	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	silent	c.1674	p.L558	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	50	0	0	31	8	20.51	-	-	-	T	10385934	C	T	10385934	2	4	275	1	0	0	0	0	0	0	0	1	9671	825	29	2		2	MKKS	20	10385934	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	969678	10385934	52639586	4746	30433										
C20orf94	0	genome.wustl.edu	37	chr20	10603715	10603715	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagctctgcggaagacttCgaccaccacgggagagtttc	12	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	10603715	10603715	C	T	SNP	C20orf94	ENST00000334534	human	ensembl	69_37n	1	known	silent	c.915	p.F305	0.050	NULL	NULL	-	no_errors	C20orf94	HGNC	ENSG00000149346	171	0	0	127	20	13.51	-	-	-	T	10603715	C	T	10603715	2	4	275	1	0	0	0	0	0	0	0	1	2141	883	31	1		1	C20orf94	20	10603715	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	217781	10603715	52421805	4747	30434										
BTBD3	0	genome.wustl.edu	37	chr20	11903822	11903823	+	Frame_Shift_Ins	INS	-	-	GC													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcagccaaaaagcctgagINScttcagtttgtgagtaaagc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	11903822	11903823	-	GC	INS	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	frame_shift_ins	c.1077_1078	p.L359fs	1.000:0.956	NULL	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	124	0	0	94	13	12.15	-	-	-	GC	11903823	-	GC	11903822	7	5	275	1	0	1	1	0	0	0	0	0	1553	962	34	0	1091	0	BTBD3	20	11903822	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	1300107	11903822	51121698	4748	30435										
ESF1	0	genome.wustl.edu	37	chr20	13763243	13763243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatgtcctttgtttttcttCgagagaagagtctgtagtat	9	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	13763243	13763243	C	T	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	missense	c.544	p.E182K	0.172	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	63	0	0	58	9	13.43	-	-	-	T	13763243	C	T	13763243	3	4	275	1	0	0	0	0	1	0	0	0	5288	893	31	1	2063	1	ESF1	20	13763243	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1859421	13763243	49262277	4749	30436										
ESF1	0	genome.wustl.edu	37	chr20	13763477	13763477	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagattttttgaatcgatttCttttttagtctgggtttttt	7	3	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	13763477	13763477	C	A	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	nonsense	c.310	p.E104*	0.002	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	48	0	0	45	8	15.09	-	-	-	A	13763477	C	A	13763477	4	1	275	1	0	0	0	0	0	1	0	0	5288	922	32	2	2297	2	ESF1	20	13763477	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	234	13763477	49262043	4750	30437										
SEL1L2	0	genome.wustl.edu	37	chr20	13912263	13912263	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acttacaatgattcttatttCtcttcaagatatctttattt	2	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	13912263	13912263	C	A	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	missense	c.269	p.R90I	0.178	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	109	0	0	105	28	21.05	-	-	-	A	13912263	C	A	13912263	3	1	275	1	0	0	0	0	1	0	0	0	14099	913	32	2	1869	2	SEL1L2	20	13912263	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	148786	13912263	49113257	4751	30438										
MACROD2	0	genome.wustl.edu	37	chr20	15210642	15210642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atattaatggttcccacaagGaagaccttgcaaattgctat	7	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	15210642	15210642	G	A	SNP	MACROD2	ENST00000310348	human	ensembl	69_37n	1	known	missense	c.475	p.E159K	1.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD2	HGNC	ENSG00000172264	328	0	0	197	40	16.88	-	-	-	A	15210642	G	A	15210642	3	1	275	1	0	0	0	0	1	0	0	0	9213	1175	41	2	497	2	MACROD2	20	15210642	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1298379	15210642	47814878	4752	30439										
KIF16B	0	genome.wustl.edu	37	chr20	16360622	16360622	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcttcaaatttttccttCtccgcaagtaaatcctttag	3	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	16360622	16360622	C	A	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.2025	p.E675D	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	300	0	0	275	95	25.68	-	-	-	A	16360622	C	A	16360622	3	1	275	1	0	0	0	0	1	0	0	0	8330	912	32	2	1960	2	KIF16B	20	16360622	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1149980	16360622	46664898	4753	30440										
KIF16B	0	genome.wustl.edu	37	chr20	16493483	16493483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccctacctgacttcagttCgaaaagaagcttcatcccat	7	13	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	16493483	16493483	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.434	p.R145Q	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	281	0	0	168	62	26.96	-	-	-	T	16493483	C	T	16493483	3	4	275	1	0	0	0	0	1	0	0	0	8330	884	31	1	3607	1	KIF16B	20	16493483	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	132861	16493483	46532037	4754	30441										
OTOR	0	genome.wustl.edu	37	chr20	16729139	16729139	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgtctagcttccaagaagctCtgtgcagatgatgagtgtgt	12	8	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	16729139	16729139	C	A	SNP	OTOR	ENST00000246081	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.997	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879	522	0	0	297	53	15.14	-	-	-	A	16729139	C	A	16729139	2	1	275	1	0	0	0	0	0	0	0	1	11381	900	32	2		2	OTOR	20	16729139	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	235656	16729139	46296381	4755	30442										
C20orf72	0	genome.wustl.edu	37	chr20	17970710	17970710	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctagaagaatatacggaaaaGaaaaagaaccagaatattca	7	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	17970710	17970710	G	T	SNP	C20orf72	ENST00000377704	human	ensembl	69_37n	1	known	nonsense	c.640	p.E214*	0.995	NULL	NULL	-	no_errors	C20orf72	HGNC	ENSG00000125871	103	0	0	116	16	12.12	-	-	-	T	17970710	G	T	17970710	4	4	275	1	0	0	0	0	0	1	0	0	2138	933	33	2	1007	2	C20orf72	20	17970710	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1241571	17970710	45054810	4756	30443										
CSRP2BP	0	genome.wustl.edu	37	chr20	18123425	18123425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagagacgctcctgatcgtcGaatccgaggatcaggcatca	12	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	18123425	18123425	G	A	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.121	p.E41K	0.994	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	202	0	0	140	54	27.55	-	-	-	A	18123425	G	A	18123425	3	1	275	1	0	0	0	0	1	0	0	0	4000	1059	37	1	123	1	CSRP2BP	20	18123425	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	152715	18123425	44902095	4757	30444										
ZNF133	0	genome.wustl.edu	37	chr20	18296602	18296602	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagcgacaggtcaaacctCatctcccaccagaggacgca	8	15	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	18296602	18296602	C	A	SNP	ZNF133	ENST00000396026	human	ensembl	69_37n	1	known	silent	c.1116	p.L372	0.985	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	169	0	0	139	24	14.72	-	-	-	A	18296602	C	A	18296602	2	1	275	1	0	0	0	0	0	0	0	1	17819	813	29	2		2	ZNF133	20	18296602	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	173177	18296602	44728918	4758	30445										
CRNKL1	0	genome.wustl.edu	37	chr20	20020423	20020423	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccggcatctgtcaaattctcGaagctgtagctccaattcta	7	12	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	20020423	20020423	G	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	nonsense	c.1858	p.R620*	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	129	0	0	119	15	11.19	-	-	-	A	20020423	G	A	20020423	4	1	275	1	0	0	0	0	0	1	0	0	3921	1066	37	1	704	1	CRNKL1	20	20020423	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1723821	20020423	43005097	4759	30446										
RALGAPA2	0	genome.wustl.edu	37	chr20	20493169	20493169	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attgttaccttctgtcccaaGaattcattcccaagtcatca	4	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	20493169	20493169	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.4844	p.S1615F	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	118	0	0	112	20	15.15	-	-	-	A	20493169	G	A	20493169	3	1	275	1	0	0	0	0	1	0	0	0	13097	942	33	2	809	2	RALGAPA2	20	20493169	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	472746	20493169	42532351	4760	30447										
RALGAPA2	0	genome.wustl.edu	37	chr20	20571928	20571928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggccagatccggctgcaggtGcattttctgactgttgacac	12	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	20571928	20571928	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.2234	p.A745V	0.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	308	0	0	204	36	14.81	-	-	-	A	20571928	G	A	20571928	3	1	275	1	0	0	0	0	1	0	0	0	13097	1319	46	4	3479	4	RALGAPA2	20	20571928	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	78759	20571928	42453592	4761	30448										
GZF1	0	genome.wustl.edu	37	chr20	23349471	23349471	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtacttaaaacaccacaataGaatccatactggatccaaac	4	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	23349471	23349471	G	T	SNP	GZF1	ENST00000338121	human	ensembl	69_37n	1	known	missense	c.1532	p.R511I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	254	0	0	105	17	13.93	-	-	-	T	23349471	G	T	23349471	3	4	275	1	0	0	0	0	1	0	0	0	6965	942	33	2	1542	2	GZF1	20	23349471	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2777543	23349471	39676049	4762	30449										
CST11	0	genome.wustl.edu	37	chr20	23431198	23431198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgttcaaaccagggtacaGcaaacactgagaagaagcag	10	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	23431198	23431198	G	T	SNP	CST11	ENST00000377009	human	ensembl	69_37n	-1	known	missense	c.362	p.A121D	0.000	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST11	HGNC	ENSG00000125831	509	0	0	439	82	15.74	-	-	-	T	23431198	G	T	23431198	3	4	275	1	0	0	0	0	1	0	0	0	4003	971	34	4	58	4	CST11	20	23431198	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	81727	23431198	39594322	4763	30450										
CST3	0	genome.wustl.edu	37	chr20	23615981	23615981	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggcccagctccacgtccaaGaagtagttcaccccagctac	8	17	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	23615981	23615981	G	T	SNP	CST3	ENST00000376925	human	ensembl	69_37n	-1	known	missense	c.267	p.F89L	0.125	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST3	HGNC	ENSG00000101439	89	0	0	32	18	36	-	-	-	T	23615981	G	T	23615981	3	4	275	1	0	0	0	0	1	0	0	0	4005	933	33	2	181	2	CST3	20	23615981	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184783	23615981	39409539	4764	30451										
ENTPD6	0	genome.wustl.edu	37	chr20	25196318	25196318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acactctcttgcaggcgtttCggcgtggatcaccatcaact	9	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	25196318	25196318	C	T	SNP	ENTPD6	ENST00000376652	human	ensembl	69_37n	1	known	missense	c.680	p.S227L	0.328	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586	83	0	0	49	10	16.95	-	-	-	T	25196318	C	T	25196318	3	4	275	1	0	0	0	0	1	0	0	0	5180	893	31	1	709	1	ENTPD6	20	25196318	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1580337	25196318	37829202	4765	30452										
DEFB119	0	genome.wustl.edu	37	chr20	29964984	29964984	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtagcaggcacatgaattTtaatgaggggggttgacagc	16	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	29964984	29964984	T	G	SNP	DEFB119	ENST00000492344	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	DEFB119	HGNC	ENSG00000180483	161	0	0	162	66	28.95	-	-	-	G	29964984	T	G	29964984	1	3	275	0	1	0	0	0	0	0	0	0	4442	1856	64	5		5	DEFB119	20	29964984	RNA	SNP	T	TCGA-AN-A046-01A-21W-A050-09	4768666	29964984	33060536	4766	30453										
DEFB121	0	genome.wustl.edu	37	chr20	30000597	30000597	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaaaattgcatctcaaatCtaagacccagagggctcacc	7	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30000597	30000597	C	T	SNP	DEFB121	ENST00000376312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	DEFB121	HGNC	ENSG00000204548	64	0	0	50	27	35.06	-	-	-	T	30000597	C	T	30000597	1	4	275	0	1	0	0	0	0	0	0	0	4443	928	32	2		2	DEFB121	20	30000597	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35613	30000597	33024923	4767	30454										
REM1	0	genome.wustl.edu	37	chr20	30070281	30070281	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggcccgctgccgagaagtCtctgtggaaggtgagccctc	14	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30070281	30070281	C	A	SNP	REM1	ENST00000201979	human	ensembl	69_37n	1	known	silent	c.615	p.V205	0.965	pfam_Small_GTPase,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320	85	0	0	61	14	18.67	-	-	-	A	30070281	C	A	30070281	2	1	275	1	0	0	0	0	0	0	0	1	13305	900	32	2		2	REM1	20	30070281	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	69684	30070281	32955239	4768	30455										
ID1	0	genome.wustl.edu	37	chr20	30193473	30193473	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgagcaaggtggagattCtccagcacgtcatcgactac	12	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30193473	30193473	C	T	SNP	ID1	ENST00000376112	human	ensembl	69_37n	1	known	missense	c.283	p.L95F	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ID1	HGNC	ENSG00000125968	100	0	0	28	11	28.21	-	-	-	T	30193473	C	T	30193473	3	4	275	1	0	0	0	0	1	0	0	0	7543	913	32	2	285	2	ID1	20	30193473	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	123192	30193473	32832047	4769	30456										
MYLK2	0	genome.wustl.edu	37	chr20	30409395	30409395	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccagaaggaagtgggagaGaaaaccccaggccaggctgg	16	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30409395	30409395	G	T	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	missense	c.627	p.E209D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	50	0	0	26	6	18.75	-	-	-	T	30409395	G	T	30409395	3	4	275	1	0	0	0	0	1	0	0	0	10129	933	33	2	637	2	MYLK2	20	30409395	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	215922	30409395	32616125	4770	30457										
MYLK2	0	genome.wustl.edu	37	chr20	30421572	30421572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcaagaagatcagcagctCgggggcactgatggctctgg	14	10	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30421572	30421572	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	missense	c.1763	p.S588L	0.997	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	113	0	0	58	7	10.77	-	-	-	T	30421572	C	T	30421572	3	4	275	1	0	0	0	0	1	0	0	0	10129	893	31	1	1809	1	MYLK2	20	30421572	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	12177	30421572	32603948	4771	30458										
TM9SF4	0	genome.wustl.edu	37	chr20	30749159	30749159	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttatgccatcttttatttCgttaacaaggtactgccctc	6	10	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	30749159	30749159	C	T	SNP	TM9SF4	ENST00000398022	human	ensembl	69_37n	1	known	silent	c.1770	p.F590	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337	376	0	0	286	47	14.11	-	-	-	T	30749159	C	T	30749159	2	4	275	1	0	0	0	0	0	0	0	1	16075	883	31	1		1	TM9SF4	20	30749159	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	327587	30749159	32276361	4772	30459										
ASXL1	0	genome.wustl.edu	37	chr20	31024379	31024379	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttggtccagagcagacaggTcgggccctgggtgatcagag	16	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	31024379	31024379	T	C	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.3864	p.G1288	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	59	0	0	30	9	23.08	-	-	-	C	31024379	T	C	31024379	2	2	275	1	0	0	0	0	0	0	0	1	1070	1654	58	5		5	ASXL1	20	31024379	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	275220	31024379	32001141	4773	30460										
DNMT3B	0	genome.wustl.edu	37	chr20	31372576	31372576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttataaaggacttgacaggcGatggcgacggggaagatggg	17	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	31372576	31372576	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	69_37n	1	known	missense	c.217	p.D73N	0.544	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3B	HGNC	ENSG00000088305	193	0	0	138	39	22.03	-	-	-	A	31372576	G	A	31372576	3	1	275	1	0	0	0	0	1	0	0	0	4712	1058	37	1	267	1	DNMT3B	20	31372576	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	348197	31372576	31652944	4774	30461										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31960460	31960460	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgtacctggaatagattCtctaatatggtgaactaact	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	31960460	31960460	C	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	nonsense	c.1291	p.E431*	0.990	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	202	0	0	177	61	25.63	-	-	-	A	31960460	C	A	31960460	4	1	275	1	0	0	0	0	0	1	0	0	3174	922	32	2	534	2	CDK5RAP1	20	31960460	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	587884	31960460	31065060	4775	30462										
CBFA2T2	0	genome.wustl.edu	37	chr20	32232411	32232411	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaccacatcgcgttcctcaAcacctgcttctgtgacagct	6	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	32232411	32232411	A	G	SNP	CBFA2T2	ENST00000346541	human	ensembl	69_37n	1	known	missense	c.1774	p.T592A	0.988	prints_MTGR1	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699	68	0	0	56	25	30.86	-	-	-	G	32232411	A	G	32232411	3	3	275	1	0	0	0	0	1	0	0	0	2722	43	2	5	1854	5	CBFA2T2	20	32232411	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	271951	32232411	30793109	4776	30463										
NCOA6	0	genome.wustl.edu	37	chr20	33315108	33315108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtcgagaagatcgtttacGatgtccattttccacacttt	8	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	33315108	33315108	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.6103	p.R2035C	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	472	0	0	303	128	29.7	-	-	-	A	33315108	G	A	33315108	3	1	275	1	0	0	0	0	1	0	0	0	10305	1058	37	1	96	1	NCOA6	20	33315108	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1082697	33315108	29710412	4777	30464										
GGT7	0	genome.wustl.edu	37	chr20	33451191	33451191	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggtgagacaggccgtgacGatgaccgtgagcccatcctg	14	11	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	33451191	33451191	G	A	SNP	GGT7	ENST00000336431	human	ensembl	69_37n	-1	novel	silent	c.330	p.I110	1.000	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT7	HGNC	ENSG00000131067	37	0	0	30	6	16.67	-	-	-	A	33451191	G	A	33451191	2	1	275	1	0	0	0	0	0	0	0	1	6416	1048	37	1		1	GGT7	20	33451191	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	136083	33451191	29574329	4778	30465										
MMP24	0	genome.wustl.edu	37	chr20	33842406	33842406	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaggcagacatcatgatCttttttgcttctggtttcca	9	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	33842406	33842406	C	A	SNP	MMP24	ENST00000246186	human	ensembl	69_37n	1	known	silent	c.666	p.I222	0.997	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP24	HGNC	ENSG00000125966	429	0	0	307	49	13.73	-	-	-	A	33842406	C	A	33842406	2	1	275	1	0	0	0	0	0	0	0	1	9733	903	32	2		2	MMP24	20	33842406	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	391215	33842406	29183114	4779	30466										
RBM12	0	genome.wustl.edu	37	chr20	34241693	34241693	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagttctgcagtctttttcGaatcatatctatcttttcta	5	8	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	34241693	34241693	G	A	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	nonsense	c.1552	p.R518*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	93	0	0	60	17	22.08	-	-	-	A	34241693	G	A	34241693	4	1	275	1	0	0	0	0	0	1	0	0	13196	1066	37	1	1250	1	RBM12	20	34241693	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	399287	34241693	28783827	4780	30467										
DLGAP4	0	genome.wustl.edu	37	chr20	35154272	35154272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaccctgatgccaacccaCgccccacagcccaggacctg	8	19	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	35154272	35154272	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.2623	p.R875C	0.987	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	113	0	0	56	18	23.68	-	-	-	T	35154272	C	T	35154272	3	4	275	1	0	0	0	0	1	0	0	0	4598	536	19	1	2780	1	DLGAP4	20	35154272	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	912579	35154272	27871248	4781	30468										
DLGAP4	0	genome.wustl.edu	37	chr20	35155452	35155452	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagaccatgcaggaggaaaGaaacgattttaaatcattaa	9	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	35155452	35155452	G	T	SNP	DLGAP4	ENST00000475894	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	DLGAP4	HGNC	ENSG00000080845	71	0	0	55	12	17.91	-	-	-	T	35155452	G	T	35155452	1	4	275	0	1	0	0	0	0	0	0	0	4598	957	33	2		2	DLGAP4	20	35155452	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1180	35155452	27870068	4782	30469										
C20orf24	0	genome.wustl.edu	37	chr20	35240525	35240525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacagcacaggaacttgatCgttggggaaccccagcccct	10	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	35240525	35240525	C	T	SNP	C20orf24	ENST00000342422	human	ensembl	69_37n	1	putative	missense	c.331	p.R111C	0.000	NULL	NULL	-	no_errors	C20orf24	HGNC	ENSG00000101084	153	0	0	144	22	13.25	-	-	-	T	35240525	C	T	35240525	3	4	275	1	0	0	0	0	1	0	0	0	2125	884	31	1	475	1	C20orf24	20	35240525	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	85073	35240525	27784995	4783	30470										
C20orf132	0	genome.wustl.edu	37	chr20	35769623	35769623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtaattctcctgctgatCgctggatgcagggatgtttc	12	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	35769623	35769623	C	T	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.1430	p.R477Q	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	138	0	0	148	22	12.94	-	-	-	T	35769623	C	T	35769623	3	4	275	1	0	0	0	0	1	0	0	0	2106	884	31	1	1762	1	C20orf132	20	35769623	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	529098	35769623	27255897	4784	30471										
CTNNBL1	0	genome.wustl.edu	37	chr20	36407727	36407727	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggtcttcagctgatgaatCtcatgctcaggtatgtttcg	11	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	36407727	36407727	C	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	missense	c.940	p.L314I	1.000	superfamily_ARM-type_fold	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	839	0	0	348	147	29.7	-	-	-	A	36407727	C	A	36407727	3	1	275	1	0	0	0	0	1	0	0	0	4050	913	32	2	1059	2	CTNNBL1	20	36407727	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	638104	36407727	26617793	4785	30472										
TGM2	0	genome.wustl.edu	37	chr20	36758733	36758733	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagcggcagcaggtccattCtcaccttaacttcctcccct	8	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	36758733	36758733	C	A	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	missense	c.1952	p.R651I	0.704	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	104	0	0	51	12	19.05	-	-	-	A	36758733	C	A	36758733	3	1	275	1	0	0	0	0	1	0	0	0	15925	913	32	2	115	2	TGM2	20	36758733	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	351006	36758733	26266787	4786	30473										
KIAA1755	0	genome.wustl.edu	37	chr20	36845691	36845691	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaggtggagcagcgtctcGaggtccgtgcgttgccgctc	16	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	36845691	36845691	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.2865	p.L955	0.966	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	40	0	0	12	6	33.33	-	-	-	A	36845691	G	A	36845691	2	1	275	1	0	0	0	0	0	0	0	1	8309	1045	37	1		1	KIAA1755	20	36845691	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	86958	36845691	26179829	4787	30474										
KIAA1755	0	genome.wustl.edu	37	chr20	36851970	36851970	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggggggtcggccttctcGaattcctcgatggaagcttg	14	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	36851970	36851970	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.2238	p.F746	0.947	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	111	0	0	93	21	18.42	-	-	-	A	36851970	G	A	36851970	2	1	275	1	0	0	0	0	0	0	0	1	8309	1049	37	1		1	KIAA1755	20	36851970	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6279	36851970	26173550	4788	30475										
RALGAPB	0	genome.wustl.edu	37	chr20	37126021	37126021	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagggttccagtcagattCgactatgcttacaggtcctg	10	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	37126021	37126021	C	T	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	nonsense	c.415	p.R139*	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	193	0	0	160	21	11.6	-	-	-	T	37126021	C	T	37126021	4	4	275	1	0	0	0	0	0	1	0	0	13098	876	31	1	425	1	RALGAPB	20	37126021	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	274051	37126021	25899499	4789	30476										
RALGAPB	0	genome.wustl.edu	37	chr20	37154118	37154118	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccattaatatcctgctttCtttgttgcccctccctcatc	3	16	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	37154118	37154118	C	A	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.1859	p.S620Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	684	0	0	575	78	11.94	-	-	-	A	37154118	C	A	37154118	3	1	275	1	0	0	0	0	1	0	0	0	13098	913	32	2	1901	2	RALGAPB	20	37154118	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	28097	37154118	25871402	4790	30477										
RALGAPB	0	genome.wustl.edu	37	chr20	37174915	37174915	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgctcggcgcatttccttCacctagtggtcctgcctctc	9	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	37174915	37174915	C	T	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.2744	p.S915L	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	203	0	0	167	26	13.47	-	-	-	T	37174915	C	T	37174915	3	4	275	1	0	0	0	0	1	0	0	0	13098	838	29	2	2814	2	RALGAPB	20	37174915	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20797	37174915	25850605	4791	30478										
SLC32A1	0	genome.wustl.edu	37	chr20	37356724	37356724	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgagttccactgcatgatGaactggacgcacatcgcagc	11	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	37356724	37356724	G	T	SNP	SLC32A1	ENST00000217420	human	ensembl	69_37n	1	known	missense	c.1020	p.M340I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438	47	0	0	23	9	28.12	-	-	-	T	37356724	G	T	37356724	3	4	275	1	0	0	0	0	1	0	0	0	14654	1290	45	2	1026	2	SLC32A1	20	37356724	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	181809	37356724	25668796	4792	30479										
ACTR5	0	genome.wustl.edu	37	chr20	37378744	37378744	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagcttctttttgagtgctAcgggattcccaaggttgcct	11	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	37378744	37378744	A	G	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	1	known	missense	c.467	p.Y156C	0.997	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	247	0	0	134	48	26.37	-	-	-	G	37378744	A	G	37378744	3	3	275	1	0	0	0	0	1	0	0	0	215	391	14	5	473	5	ACTR5	20	37378744	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	22020	37378744	25646776	4793	30480										
PLCG1	0	genome.wustl.edu	37	chr20	39791337	39791337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagtttgctcagctgtaccGcagcctcatgtacagcgccc	10	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	39791337	39791337	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.653	p.R218H	1.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	106	1	0.93	65	16	19.51	-	-	-	A	39791337	G	A	39791337	3	1	275	1	0	0	0	0	1	0	0	0	12109	1087	38	1	675	1	PLCG1	20	39791337	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2412593	39791337	23234183	4794	30481										
CHD6	0	genome.wustl.edu	37	chr20	40111980	40111980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggtaatcttctaggatgtCgaggcagcgcaccatctggg	14	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	40111980	40111980	C	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.2437	p.D813N	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	265	0	0	138	24	14.81	-	-	-	T	40111980	C	T	40111980	3	4	275	1	0	0	0	0	1	0	0	0	3358	884	31	1	5798	1	CHD6	20	40111980	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	320643	40111980	22913540	4795	30482										
PTPRT	0	genome.wustl.edu	37	chr20	40714431	40714431	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtcgatgtctgcggagacGaactccacctggatgggccc	13	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	40714431	40714431	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.3975	p.F1325	0.214	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	92	0	0	63	7	10	-	-	-	A	40714431	G	A	40714431	2	1	275	1	0	0	0	0	0	0	0	1	12895	1049	37	1		1	PTPRT	20	40714431	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	602451	40714431	22311089	4796	30483										
PTPRT	0	genome.wustl.edu	37	chr20	40770576	40770576	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatatgatgttcccatatcGattcttattgcggttttcat	8	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	40770576	40770576	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	nonsense	c.2815	p.R939*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	364	0	0	219	27	10.93	-	-	-	A	40770576	G	A	40770576	4	1	275	1	0	0	0	0	0	1	0	0	12895	1066	37	1	1632	1	PTPRT	20	40770576	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	56145	40770576	22254944	4797	30484										
PTPRT	0	genome.wustl.edu	37	chr20	41385109	41385109	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggaggcactcacctttcacGatcagctccgcgtagttgga	11	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	41385109	41385109	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.852	p.I284	0.133	pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	126	0	0	78	11	12.36	-	-	-	A	41385109	G	A	41385109	2	1	275	1	0	0	0	0	0	0	0	1	12895	1048	37	1		1	PTPRT	20	41385109	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	614533	41385109	21640411	4798	30485										
IFT52	0	genome.wustl.edu	37	chr20	42264644	42264644	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagacgccgctgccaaccctTcagcctgcggtgagtaggtg	14	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	42264644	42264644	T	G	SNP	IFT52	ENST00000373030	human	ensembl	69_37n	1	known	silent	c.1002	p.L334	0.989	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	133	1	0.75	116	16	12.12	-	-	-	G	42264644	T	G	42264644	2	3	275	1	0	0	0	0	0	0	0	1	7615	1770	62	5		5	IFT52	20	42264644	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	879535	42264644	20760876	4799	30486										
PKIG	0	genome.wustl.edu	37	chr20	43243275	43243275	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cggaatgcggtccctgacatCcagggagactcagaggctgt	14	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43243275	43243275	C	T	SNP	PKIG	ENST00000349959	human	ensembl	69_37n	1	known	silent	c.78	p.I26	1.000	pfam_cAMP_dep_PKI	pfam_cAMP_dep_PKI	-	no_errors	PKIG	HGNC	ENSG00000168734	254	0	0	189	34	15.04	-	-	-	T	43243275	C	T	43243275	2	4	275	1	0	0	0	0	0	0	0	1	12049	845	30	2		2	PKIG	20	43243275	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	978631	43243275	19782245	4800	30487										
KCNK15	0	genome.wustl.edu	37	chr20	43378957	43378957	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggacgtgcgtgtccacggaGaacctggtggtggccgggct	18	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43378957	43378957	G	T	SNP	KCNK15	ENST00000372861	human	ensembl	69_37n	1	known	missense	c.471	p.E157D	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK5,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	-	no_errors	KCNK15	HGNC	ENSG00000124249	30	0	0	18	4	18.18	-	-	-	T	43378957	G	T	43378957	3	4	275	1	0	0	0	0	1	0	0	0	8116	933	33	2	477	2	KCNK15	20	43378957	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	135682	43378957	19646563	4801	30488										
YWHAB	0	genome.wustl.edu	37	chr20	43533689	43533689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagcctacacacccaattCgtcttggtctggcactaaat	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43533689	43533689	C	T	SNP	YWHAB	ENST00000353703	human	ensembl	69_37n	1	known	missense	c.505	p.R169C	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAB	HGNC	ENSG00000166913	129	0	0	107	32	23.02	-	-	-	T	43533689	C	T	43533689	3	4	275	1	0	0	0	0	1	0	0	0	17598	884	31	1	515	1	YWHAB	20	43533689	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	154732	43533689	19491831	4802	30489										
TOMM34	0	genome.wustl.edu	37	chr20	43571812	43571813	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaccattcctaggctcaatINSctgtaggaggttgctgatgt							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43571812	43571813	-	A	INS	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	frame_shift_ins	c.868_867	p.I289fs	0.916:0.380	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	423	0	0	478	60	11.15	-	-	-	A	43571813	-	A	43571812	7	5	275	1	0	1	1	0	0	0	0	0	16452	1435	50	0	65	0	TOMM34	20	43571812	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	38123	43571812	19453708	4803	30490	250	2								
TOMM34	0	genome.wustl.edu	37	chr20	43571813	43571814	+	Frame_Shift_Ins	INS	-	-	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaccattcctaggctcaatcINStgtaggaggttgctgatgtc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43571813	43571814	-	A	INS	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	frame_shift_ins	c.867_866	p.Q289fs	0.380:0.768	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	420	0	0	449	60	11.79	-	-	-	A	43571814	-	A	43571813	7	5	275	1	0	1	1	0	0	0	0	0	16452	912	32	0	66	0	TOMM34	20	43571813	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	1	43571813	19453707	4804	30491	250	2								
TOMM34	0	genome.wustl.edu	37	chr20	43571825	43571826	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctcaatctgtaggaggttgINSctgatgtctgcaaagctgga							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43571825	43571826	-	T	INS	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	frame_shift_ins	c.855_854	p.S285fs	1.000:1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	385	0	0	408	60	12.82	-	-	-	T	43571826	-	T	43571825	7	5	275	1	0	1	1	0	0	0	0	0	16452	1310	46	0	78	0	TOMM34	20	43571825	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	12	43571825	19453695	4805	30492										
STK4	0	genome.wustl.edu	37	chr20	43607180	43607180	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagacctccaggagataatCaaagaaatctctataatgca	6	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43607180	43607180	C	A	SNP	STK4	ENST00000372806	human	ensembl	69_37n	1	known	silent	c.213	p.I71	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK4	HGNC	ENSG00000101109	220	0	0	138	17	10.9	-	-	-	A	43607180	C	A	43607180	2	1	275	1	0	0	0	0	0	0	0	1	15397	816	29	2		2	STK4	20	43607180	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	35355	43607180	19418340	4806	30493										
KCNS1	0	genome.wustl.edu	37	chr20	43723695	43723695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctccagagccttctggCgccggtagaagtgggagaac	14	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43723695	43723695	C	T	SNP	KCNS1	ENST00000306117	human	ensembl	69_37n	-1	known	missense	c.1397	p.R466H	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNS1	HGNC	ENSG00000124134	95	0	0	37	5	11.9	-	-	-	T	43723695	C	T	43723695	3	4	275	1	0	0	0	0	1	0	0	0	8142	768	27	1	187	1	KCNS1	20	43723695	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	116515	43723695	19301825	4807	30494										
WFDC12	0	genome.wustl.edu	37	chr20	43753073	43753073	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacaccatgaggaccaagaAgctgctggaccccatgttgc	11	12	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43753073	43753073	A	C	SNP	WFDC12	ENST00000372785	human	ensembl	69_37n	-1	known	missense	c.16	p.F6V	0.010	NULL	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC12	HGNC	ENSG00000168703	332	0	0	162	62	27.68	-	-	-	C	43753073	A	C	43753073	3	2	275	1	0	0	0	0	1	0	0	0	17447	72	3	5	331	5	WFDC12	20	43753073	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	29378	43753073	19272447	4808	30495										
SEMG2	0	genome.wustl.edu	37	chr20	43850672	43850672	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttatacatcataaaggaggCcaagctcatcatgggacaca	9	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43850672	43850672	C	T	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	silent	c.399	p.G133	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	245	0	0	171	23	11.86	-	-	-	T	43850672	C	T	43850672	2	4	275	1	0	0	0	0	0	0	0	1	14133	726	26	4		4	SEMG2	20	43850672	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97599	43850672	19174848	4809	30496										
RBPJL	0	genome.wustl.edu	37	chr20	43945334	43945334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccacccccaggagcccgcGgtccctggtgtgcgtggtgc	14	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	43945334	43945334	G	A	SNP	RBPJL	ENST00000343694	human	ensembl	69_37n	1	known	missense	c.1289	p.R430Q	0.828	superfamily_Ig_E-set	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232	88	0	0	44	13	22.81	-	-	-	A	43945334	G	A	43945334	3	1	275	1	0	0	0	0	1	0	0	0	13245	1116	39	1	1335	1	RBPJL	20	43945334	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	94662	43945334	19080186	4810	30497										
TP53TG5	0	genome.wustl.edu	37	chr20	44004147	44004147	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggagcacccgatctcctgGaactcttcattattttgttt	7	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	44004147	44004147	G	A	SNP	TP53TG5	ENST00000372726	human	ensembl	69_37n	-1	known	silent	c.300	p.F100	0.717	NULL	NULL	-	no_errors	TP53TG5	HGNC	ENSG00000124251	172	0	0	114	14	10.94	-	-	-	A	44004147	G	A	44004147	2	1	275	1	0	0	0	0	0	0	0	1	16487	1165	41	2		2	TP53TG5	20	44004147	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	58813	44004147	19021373	4811	30498										
TP53TG5	0	genome.wustl.edu	37	chr20	44005868	44005868	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacccagaggagatgcggaGaatctttggaacactgagca	12	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	44005868	44005868	G	A	SNP	TP53TG5	ENST00000372726	human	ensembl	69_37n	-1	known	missense	c.238	p.L80F	0.091	NULL	NULL	-	no_errors	TP53TG5	HGNC	ENSG00000124251	321	0	0	204	31	13.19	-	-	-	A	44005868	G	A	44005868	3	1	275	1	0	0	0	0	1	0	0	0	16487	942	33	2	646	2	TP53TG5	20	44005868	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1721	44005868	19019652	4812	30499										
ZSWIM3	0	genome.wustl.edu	37	chr20	44507046	44507046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgagaagcaaggacggaacGacatgattcaggacctaagc	12	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	44507046	44507046	G	A	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	1	known	missense	c.1849	p.D617N	0.000	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	105	0	0	82	10	10.75	-	-	-	A	44507046	G	A	44507046	3	1	275	1	0	0	0	0	1	0	0	0	18333	1058	37	1	1855	1	ZSWIM3	20	44507046	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	501178	44507046	18518474	4813	30500										
PCIF1	0	genome.wustl.edu	37	chr20	44574937	44574937	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgactctttggcgtcagcttCgagtgcttcgcctcacccct	9	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	44574937	44574937	C	T	SNP	PCIF1	ENST00000372409	human	ensembl	69_37n	1	known	silent	c.1527	p.F509	0.524	pfam_PCIF1_WW	pfam_PCIF1_WW,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	PCIF1	HGNC	ENSG00000100982	60	0	0	31	9	22.5	-	-	-	T	44574937	C	T	44574937	2	4	275	1	0	0	0	0	0	0	0	1	11653	883	31	1		1	PCIF1	20	44574937	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	67891	44574937	18450583	4814	30501										
ZNF334	0	genome.wustl.edu	37	chr20	45130434	45130434	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcactacactcataaagaTtctcctttgtgttcattctc	4	11	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45130434	45130434	T	G	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.1544	p.N515T	0.965	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	45	0	0	64	12	15.79	-	-	-	G	45130434	T	G	45130434	3	3	275	1	0	0	0	0	1	0	0	0	17947	1493	52	5	502	5	ZNF334	20	45130434	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	555497	45130434	17895086	4815	30502										
ZNF334	0	genome.wustl.edu	37	chr20	45131188	45131188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaatcactacaaacatacgGtttctcccctgtatgaattc	4	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45131188	45131188	G	A	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.790	p.P264S	0.160	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	66	0	0	71	15	17.44	-	-	-	A	45131188	G	A	45131188	3	1	275	1	0	0	0	0	1	0	0	0	17947	1261	44	4	1256	4	ZNF334	20	45131188	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	754	45131188	17894332	4816	30503										
ZNF334	0	genome.wustl.edu	37	chr20	45131208	45131208	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttctcccctgtatgaattCtctgatgtacaatgagggta	9	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45131208	45131208	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.770	p.R257K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	73	0	0	71	20	21.98	-	-	-	T	45131208	C	T	45131208	3	4	275	1	0	0	0	0	1	0	0	0	17947	913	32	2	1276	2	ZNF334	20	45131208	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	20	45131208	17894312	4817	30504										
SLC13A3	0	genome.wustl.edu	37	chr20	45239120	45239120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcctggctggggtcctttCgaacctccttctggccaaag	10	14	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45239120	45239120	C	T	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.506	p.R169Q	0.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	533	1	0.19	279	85	23.29	-	-	-	T	45239120	C	T	45239120	3	4	275	1	0	0	0	0	1	0	0	0	14482	884	31	1	1346	1	SLC13A3	20	45239120	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	107912	45239120	17786400	4818	30505										
SLC13A3	0	genome.wustl.edu	37	chr20	45239205	45239205	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaggcggtgttgctcagccAcatggacaagaacgaggtgg	17	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45239205	45239205	A	G	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.421	p.W141R	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	447	1	0.22	268	35	11.4	-	-	-	G	45239205	A	G	45239205	3	3	275	1	0	0	0	0	1	0	0	0	14482	159	6	5	1431	5	SLC13A3	20	45239205	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	85	45239205	17786315	4819	30506										
ZMYND8	0	genome.wustl.edu	37	chr20	45867686	45867686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acggccggggcagtctccttCggtaaaagcggcctctgctt	13	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45867686	45867686	C	T	SNP	ZMYND8	ENST00000467200	human	ensembl	69_37n	-1	known	missense	c.2203	p.E735K	0.995	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZMYND8	HGNC	ENSG00000101040	47	0	0	20	5	20	-	-	-	T	45867686	C	T	45867686	3	4	275	1	0	0	0	0	1	0	0	0	17807	871	31	1	1121	1	ZMYND8	20	45867686	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	628481	45867686	17157834	4820	30507										
ZMYND8	0	genome.wustl.edu	37	chr20	45938915	45938915	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggagggctggggaactttCttttctgggctgttctctct	14	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	45938915	45938915	C	A	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.140	p.R47I	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	266	0	0	144	49	25.26	-	-	-	A	45938915	C	A	45938915	3	1	275	1	0	0	0	0	1	0	0	0	17807	913	32	2	3531	2	ZMYND8	20	45938915	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	71229	45938915	17086605	4821	30508										
STAU1	0	genome.wustl.edu	37	chr20	47739674	47739674	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaggcctcgctctgtgagGagcgtgtactctggctcctt	15	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47739674	47739674	G	A	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	silent	c.921	p.L307	0.003	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	124	0	0	86	30	25.86	-	-	-	A	47739674	G	A	47739674	2	1	275	1	0	0	0	0	0	0	0	1	15363	1161	41	2		2	STAU1	20	47739674	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1800759	47739674	15285846	4822	30509										
DDX27	0	genome.wustl.edu	37	chr20	47839534	47839534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagaagattgagaaagttcGaaagaaaaggaaaacagagg	13	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47839534	47839534	G	A	SNP	DDX27	ENST00000371764	human	ensembl	69_37n	1	known	missense	c.374	p.R125Q	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228	215	0	0	120	41	25.47	-	-	-	A	47839534	G	A	47839534	3	1	275	1	0	0	0	0	1	0	0	0	4385	1058	37	1	384	1	DDX27	20	47839534	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	99860	47839534	15185986	4823	30510										
DDX27	0	genome.wustl.edu	37	chr20	47841658	47841658	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttctggtgtaggaagcaggAggattttttgaagatgcatc	13	4	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47841658	47841658	A	G	SNP	DDX27	ENST00000371764	human	ensembl	69_37n	1	known	silent	c.615	p.G205	0.994	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228	194	1	0.51	169	62	26.84	-	-	-	G	47841658	A	G	47841658	2	3	275	1	0	0	0	0	0	0	0	1	4385	291	11	5		5	DDX27	20	47841658	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2124	47841658	15183862	4824	30511										
DDX27	0	genome.wustl.edu	37	chr20	47860368	47860368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacagatacaagaggaggaaGtagctgtcgtggcctgaaga	14	6	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47860368	47860368	G	T	SNP	DDX27	ENST00000371764	human	ensembl	69_37n	1	known	missense	c.2388	p.K796N	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228	445	0	0	432	90	17.24	-	-	-	T	47860368	G	T	47860368	3	4	275	1	0	0	0	0	1	0	0	0	4385	1020	36	4	2470	4	DDX27	20	47860368	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18710	47860368	15165152	4825	30512										
ZNFX1	0	genome.wustl.edu	37	chr20	47865202	47865202	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgttcatggaaacgcccttcGaagcagctgtggcaggagcc	13	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47865202	47865202	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.4359	p.F1453	0.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	82	0	0	47	9	16.07	-	-	-	A	47865202	G	A	47865202	2	1	275	1	0	0	0	0	0	0	0	1	18298	1049	37	1		1	ZNFX1	20	47865202	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4834	47865202	15160318	4826	30513										
KCNB1	0	genome.wustl.edu	37	chr20	47990588	47990588	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctgttccttggtttcaaaGgacttacttgagctggtttc	9	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47990588	47990588	G	T	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	silent	c.1509	p.S503	1.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	249	0	0	184	28	13.21	-	-	-	T	47990588	G	T	47990588	2	4	275	1	0	0	0	0	0	0	0	1	8066	987	35	4		4	KCNB1	20	47990588	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	125386	47990588	15034932	4827	30514										
KCNB1	0	genome.wustl.edu	37	chr20	47991437	47991437	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggttgtctgtggactggccGaactcatcgaggctctgtag	15	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	47991437	47991437	G	A	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	silent	c.660	p.F220	0.143	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	182	0	0	98	49	33.33	-	-	-	A	47991437	G	A	47991437	2	1	275	1	0	0	0	0	0	0	0	1	8066	1049	37	1		1	KCNB1	20	47991437	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	849	47991437	15034083	4828	30515										
B4GALT5	0	genome.wustl.edu	37	chr20	48330160	48330160	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagcagcgaggacgagagaGaaaagaagaagagcgcggcg	17	7	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	48330160	48330160	G	T	SNP	B4GALT5	ENST00000371711	human	ensembl	69_37n	-1	known	missense	c.68	p.S23Y	0.996	NULL	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT5	HGNC	ENSG00000158470	27	0	0	6	4	40	-	-	-	T	48330160	G	T	48330160	3	4	275	1	0	0	0	0	1	0	0	0	1278	942	33	2	1134	2	B4GALT5	20	48330160	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	338723	48330160	14695360	4829	30516										
ADNP	0	genome.wustl.edu	37	chr20	49509888	49509888	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagacattttcaggaaaaaGctcattacagattgtacata	6	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	49509888	49509888	G	T	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.1363	p.L455I	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	115	0	0	83	10	10.75	-	-	-	T	49509888	G	T	49509888	3	4	275	1	0	0	0	0	1	0	0	0	323	971	34	4	1949	4	ADNP	20	49509888	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1179728	49509888	13515632	4830	30517										
ADNP	0	genome.wustl.edu	37	chr20	49510275	49510275	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atagttgttctgctgcagatGaacactggacatcatgttga	10	7	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	49510275	49510275	G	T	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.976	p.H326N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	190	0	0	172	22	11.34	-	-	-	T	49510275	G	T	49510275	3	4	275	1	0	0	0	0	1	0	0	0	323	1290	45	2	2336	2	ADNP	20	49510275	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	387	49510275	13515245	4831	30518										
SALL4	0	genome.wustl.edu	37	chr20	50405503	50405503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgaagagcgctagcagacGagaagttcttcccacaccgt	10	12	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	50405503	50405503	G	A	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	missense	c.2639	p.S880L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	104	0	0	82	10	10.87	-	-	-	A	50405503	G	A	50405503	3	1	275	1	0	0	0	0	1	0	0	0	13899	1059	37	1	530	1	SALL4	20	50405503	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	895228	50405503	12620017	4832	30519										
ZFP64	0	genome.wustl.edu	37	chr20	50769369	50769369	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaacggtcacgtccgagttCttactctcactgtactcact	7	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	50769369	50769369	C	A	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1362	p.K454N	0.043	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	45	0	0	23	6	20.69	-	-	-	A	50769369	C	A	50769369	3	1	275	1	0	0	0	0	1	0	0	0	17748	912	32	2	1878	2	ZFP64	20	50769369	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	363866	50769369	12256151	4833	30520										
CYP24A1	0	genome.wustl.edu	37	chr20	52775543	52775543	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatacggcatattcctcaaAtcttctgcccgtggcacctg	7	13	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	52775543	52775543	A	G	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	silent	c.1110	p.D370	0.007	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	234	0	0	173	32	15.53	-	-	-	G	52775543	A	G	52775543	2	3	275	1	0	0	0	0	0	0	0	1	4185	98	4	5		5	CYP24A1	20	52775543	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	2006174	52775543	10249977	4834	30521										
CASS4	0	genome.wustl.edu	37	chr20	55027302	55027302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgacatccctaaagcaacgtCgagtgtttctcaggctggga	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	55027302	55027302	C	T	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	1	known	missense	c.1070	p.S357L	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	34	0	0	34	9	20.93	-	-	-	T	55027302	C	T	55027302	3	4	275	1	0	0	0	0	1	0	0	0	2708	893	31	1	1088	1	CASS4	20	55027302	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2251759	55027302	7998218	4835	30522										
RAE1	0	genome.wustl.edu	37	chr20	55948751	55948751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttcacctttaaatgtcatcGatctaatggaaccaacactt	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	55948751	55948751	G	A	SNP	RAE1	ENST00000371242	human	ensembl	69_37n	1	known	missense	c.782	p.R261Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	376	0	0	289	51	14.96	-	-	-	A	55948751	G	A	55948751	3	1	275	1	0	0	0	0	1	0	0	0	13081	1058	37	1	816	1	RAE1	20	55948751	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	921449	55948751	7076769	4836	30523										
PCK1	0	genome.wustl.edu	37	chr20	56137271	56137271	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgtcagaggaggattttgaGaaagcgttcaatgccaggtt	13	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	56137271	56137271	G	T	SNP	PCK1	ENST00000319441	human	ensembl	69_37n	1	known	missense	c.369	p.E123D	1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253	56	0	0	53	7	11.67	-	-	-	T	56137271	G	T	56137271	3	4	275	1	0	0	0	0	1	0	0	0	11654	933	33	2	375	2	PCK1	20	56137271	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	188520	56137271	6888249	4837	30524										
ZBP1	0	genome.wustl.edu	37	chr20	56179798	56179798	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtctcgaggaaagtgacttCtggattgtgtgtctgcggga	15	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	56179798	56179798	C	A	SNP	ZBP1	ENST00000371173	human	ensembl	69_37n	-1	known	missense	c.1121	p.R374I	0.000	NULL	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256	233	0	0	107	46	29.87	-	-	-	A	56179798	C	A	56179798	3	1	275	1	0	0	0	0	1	0	0	0	17617	913	32	2	172	2	ZBP1	20	56179798	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	42527	56179798	6845722	4838	30525										
RAB22A	0	genome.wustl.edu	37	chr20	56928356	56928356	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttagcaccaatgtactatCgagggtcggctgcagctata	10	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	56928356	56928356	C	T	SNP	RAB22A	ENST00000244040	human	ensembl	69_37n	1	known	nonsense	c.226	p.R76*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB22A	HGNC	ENSG00000124209	376	0	0	240	95	28.36	-	-	-	T	56928356	C	T	56928356	4	4	275	1	0	0	0	0	0	1	0	0	12992	876	31	1	240	1	RAB22A	20	56928356	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	748558	56928356	6097164	4839	30526										
GNAS	0	genome.wustl.edu	37	chr20	57485864	57485864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattcagcgcatgcaccttCgtcagtacgagctgctctaa	8	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	57485864	57485864	C	T	SNP	GNAS	ENST00000354359	human	ensembl	69_37n	1	known	missense	c.1168	p.R390C	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	127	0	0	128	16	11.11	-	-	-	T	57485864	C	T	57485864	3	4	275	1	0	0	0	0	1	0	0	0	6562	884	31	1	4032	1	GNAS	20	57485864	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	557508	57485864	5539656	4840	30527										
TUBB1	0	genome.wustl.edu	37	chr20	57598563	57598563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtaggaaatatgtgccccGagcagtcttggtggacctag	14	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	57598563	57598563	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	missense	c.185	p.R62Q	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	364	0	0	229	39	14.55	-	-	-	A	57598563	G	A	57598563	3	1	275	1	0	0	0	0	1	0	0	0	16850	1058	37	1	195	1	TUBB1	20	57598563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	112699	57598563	5426957	4841	30528										
ZNF831	0	genome.wustl.edu	37	chr20	57829518	57829518	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcacaccacaaggaagggaGacacaagacgttttttcctt	8	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	57829518	57829518	G	T	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	missense	c.4754	p.R1585I	0.110	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	75	0	0	36	5	12.2	-	-	-	T	57829518	G	T	57829518	3	4	275	1	0	0	0	0	1	0	0	0	18278	942	33	2	4772	2	ZNF831	20	57829518	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	230955	57829518	5196002	4842	30529										
CDH26	0	genome.wustl.edu	37	chr20	58547017	58547017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatttttcctccttccagCtgttcaataatatgtcttat	3	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	58547017	58547017	C	T	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.232	p.L78	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	231	0	0	186	33	15	-	-	-	T	58547017	C	T	58547017	2	4	275	1	0	0	0	0	0	0	0	1	3139	811	28	4		4	CDH26	20	58547017	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	717499	58547017	4478503	4843	30530										
CDH26	0	genome.wustl.edu	37	chr20	58547091	58547091	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtgtggatgaatatccagaGattggtttgttttctctaga	12	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	58547091	58547091	G	T	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.306	p.E102D	0.984	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	446	2	0.45	268	66	19.7	-	-	-	T	58547091	G	T	58547091	3	4	275	1	0	0	0	0	1	0	0	0	3139	933	33	2	320	2	CDH26	20	58547091	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74	58547091	4478429	4844	30531										
TAF4	0	genome.wustl.edu	37	chr20	60584219	60584219	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttacatttcttcacgttTtccatagtttcctggattaa	4	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	60584219	60584219	T	G	SNP	TAF4	ENST00000252996	human	ensembl	69_37n	-1	known	missense	c.1773	p.E591D	1.000	pfam_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699	85	0	0	40	11	21.57	-	-	-	G	60584219	T	G	60584219	3	3	275	1	0	0	0	0	1	0	0	0	15618	1838	64	5	1528	5	TAF4	20	60584219	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2037128	60584219	2441301	4845	30532										
SS18L1	0	genome.wustl.edu	37	chr20	60749634	60749634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaggccaaggccagcagtaCggaagctaccgagcaccgca	12	14	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	60749634	60749634	C	T	SNP	SS18L1	ENST00000492466	human	ensembl	69_37n	1	known	missense	c.542	p.T181M	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SS18L1	HGNC	ENSG00000184402	37	0	0	12	5	29.41	-	-	-	T	60749634	C	T	60749634	3	4	275	1	0	0	0	0	1	0	0	0	15267	547	19	1	1136	1	SS18L1	20	60749634	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	165415	60749634	2275886	4846	30533										
DIDO1	0	genome.wustl.edu	37	chr20	61537438	61537438	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtctcttgtgcacagaagaGattttaatacctgcctggat	10	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	61537438	61537438	G	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.1389	p.I463	0.993	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	133	0	0	68	24	26.09	-	-	-	T	61537438	G	T	61537438	2	4	275	1	0	0	0	0	0	0	0	1	4558	932	33	2		2	DIDO1	20	61537438	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	787804	61537438	1488082	4847	30534										
COL20A1	0	genome.wustl.edu	37	chr20	61959800	61959800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccctggcacccgcagcaaggCcctggttcctggagaatggg	14	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	61959800	61959800	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	missense	c.3827	p.A1276V	0.008	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	20	0	0	3	5	62.5	-	-	-	T	61959800	C	T	61959800	3	4	275	1	0	0	0	0	1	0	0	0	3709	739	26	4	3803	4	COL20A1	20	61959800	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	422362	61959800	1065720	4848	30535										
PCMTD2	0	genome.wustl.edu	37	chr20	62904723	62904723	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaggagagttcgccgccgtCgaatggaaacgattgtcttt	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	20	62904723	62904723	C	T	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	1	known	nonsense	c.856	p.R286*	0.092	NULL	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	232	0	0	144	49	25.26	-	-	-	T	62904723	C	T	62904723	4	4	275	1	0	0	0	0	0	1	0	0	11660	876	31	1	874	1	PCMTD2	20	62904723	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	944923	62904723	120797	4849	30536										
USP25	0	genome.wustl.edu	37	chr21	17246810	17246810	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatacagaggacatgatgaaGaattgatatcacattataga	8	4	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	17246810	17246810	G	T	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	nonsense	c.2974	p.E992*	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	290	0	0	169	24	12.44	-	-	-	T	17246810	G	T	17246810	4	4	275	1	0	0	0	0	0	1	0	0	17153	943	33	2	2850	2	USP25	21	17246810	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		17246810	30883085	4850	30537										
USP25	0	genome.wustl.edu	37	chr21	17250145	17250145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaagccgcagaactcttcGaatctggagaggatcgagaa	12	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	17250145	17250145	G	A	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.3040	p.E1014K	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	451	0	0	229	60	20.76	-	-	-	A	17250145	G	A	17250145	3	1	275	1	0	0	0	0	1	0	0	0	17153	1059	37	1	2920	1	USP25	21	17250145	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3335	17250145	30879750	4851	30538										
CXADR	0	genome.wustl.edu	37	chr21	18919344	18919344	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtacatttctttctctaGatttcgccagaagtttgagt	7	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	18919344	18919344	G	T	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	splice_site	c.44-1	e2-1	1.000	-	-	-	no_errors	CXADR	HGNC	ENSG00000154639	106	0	0	65	9	12.16	-	-	-	T	18919344	G	T	18919344	5	4	275	1	0	0	0	0	0	0	1	0	4107	956	33	2	49	2	CXADR	21	18919344	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1669199	18919344	29210551	4852	30539										
CXADR	0	genome.wustl.edu	37	chr21	18924180	18924180	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgcatcaataaatgtaacGaatttacaactgtcagatat	6	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	18924180	18924180	G	A	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	silent	c.324	p.T108	0.378	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CXADR	HGNC	ENSG00000154639	370	0	0	202	87	30.1	-	-	-	A	18924180	G	A	18924180	2	1	275	1	0	0	0	0	0	0	0	1	4107	1045	37	1		1	CXADR	21	18924180	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4836	18924180	29205715	4853	30540										
NCAM2	0	genome.wustl.edu	37	chr21	22696784	22696784	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgacattttcctgcagggCctcaggctctccagaacccg	9	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	22696784	22696784	C	T	SNP	NCAM2	ENST00000400546	human	ensembl	69_37n	1	known	missense	c.701	p.A234V	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	233	0	0	155	26	14.36	-	-	-	T	22696784	C	T	22696784	3	4	275	1	0	0	0	0	1	0	0	0	10275	739	26	4	723	4	NCAM2	21	22696784	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3772604	22696784	25433111	4854	30541										
APP	0	genome.wustl.edu	37	chr21	27326925	27326925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacttcatcctgaatctcctCggccactgcaggcacgttgt	8	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	27326925	27326925	C	T	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.1666	p.E556K	0.997	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	240	0	0	202	29	12.55	-	-	-	T	27326925	C	T	27326925	3	4	275	1	0	0	0	0	1	0	0	0	817	893	31	1	670	1	APP	21	27326925	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4630141	27326925	20802970	4855	30542										
CYYR1	0	genome.wustl.edu	37	chr21	27945287	27945287	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggcctgaggcttggagcGaagggagagcccggaaccgg	20	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	27945287	27945287	G	A	SNP	CYYR1	ENST00000435845	human	ensembl	69_37n	-1	known	silent	c.297	p.F99	0.000	NULL	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265	69	0	0	22	10	31.25	-	-	-	A	27945287	G	A	27945287	2	1	275	1	0	0	0	0	0	0	0	1	4242	1073	37	1		1	CYYR1	21	27945287	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	618362	27945287	20184608	4856	30543										
ADAMTS1	0	genome.wustl.edu	37	chr21	28212300	28212300	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggttgtcacattccctcatCgtgtactggactcctccacc	8	15	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	28212300	28212300	C	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	silent	c.1746	p.T582	0.003	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	127	0	0	74	20	21.28	-	-	-	T	28212300	C	T	28212300	2	4	275	1	0	0	0	0	0	0	0	1	255	871	31	1		1	ADAMTS1	21	28212300	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	267013	28212300	19917595	4857	30544										
ADAMTS5	0	genome.wustl.edu	37	chr21	28296884	28296884	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctttggctttgaactgtcGaacttttatgtgggttgccc	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	28296884	28296884	G	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	nonsense	c.2281	p.R761*	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	148	0	0	105	21	16.67	-	-	-	A	28296884	G	A	28296884	4	1	275	1	0	0	0	0	0	1	0	0	269	1066	37	1	515	1	ADAMTS5	21	28296884	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	84584	28296884	19833011	4858	30545										
ADAMTS5	0	genome.wustl.edu	37	chr21	28315829	28315829	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaccaaaggtctcttcacaGaatttggaatcgtcatggga	10	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	28315829	28315829	G	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1275	p.F425L	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	185	1	0.54	129	62	32.46	-	-	-	T	28315829	G	T	28315829	3	4	275	1	0	0	0	0	1	0	0	0	269	933	33	2	1541	2	ADAMTS5	21	28315829	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18945	28315829	19814066	4859	30546										
N6AMT1	0	genome.wustl.edu	37	chr21	30250540	30250540	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttttctttaatggtaactAaatagaataatccttttggt	6	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	30250540	30250540	A	C	SNP	N6AMT1	ENST00000303775	human	ensembl	69_37n	-1	known	nonsense	c.512	p.L171*	0.969	pfam_Small_mtfrase_dom,tigrfam_HemK-rel_arch	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,tigrfam_HemK-rel_arch	-	no_errors	N6AMT1	HGNC	ENSG00000156239	302	0	0	156	51	24.52	-	-	-	C	30250540	A	C	30250540	4	2	275	1	0	0	0	0	0	1	0	0	10186	372	13	5	140	5	N6AMT1	21	30250540	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1934711	30250540	17879355	4860	30547										
GRIK1	0	genome.wustl.edu	37	chr21	30927588	30927588	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccttcttcttggagttgaaGaatagcaatagtaattttat	7	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	30927588	30927588	G	T	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2398	p.L800I	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	73	0	0	45	23	33.82	-	-	-	T	30927588	G	T	30927588	3	4	275	1	0	0	0	0	1	0	0	0	6824	942	33	2	532	2	GRIK1	21	30927588	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	677048	30927588	17202307	4861	30548										
KRTAP24-1	0	genome.wustl.edu	37	chr21	31654562	31654562	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tactgggtatatagctcagaGatctgaagcttctagataaa	9	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	31654562	31654562	G	T	SNP	KRTAP24-1	ENST00000340345	human	ensembl	69_37n	-1	known	missense	c.689	p.S230Y	0.809	NULL	pfam_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694	211	0	0	114	38	25	-	-	-	T	31654562	G	T	31654562	3	4	275	1	0	0	0	0	1	0	0	0	8596	942	33	2	79	2	KRTAP24-1	21	31654562	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	726974	31654562	16475333	4862	30549										
KRTAP24-1	0	genome.wustl.edu	37	chr21	31655159	31655159	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactggagctaagagtaacaGaagaggtcactgggatataa	12	6	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	31655159	31655159	G	T	SNP	KRTAP24-1	ENST00000340345	human	ensembl	69_37n	-1	known	missense	c.92	p.S31Y	0.047	pfam_PMG	pfam_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694	132	0	0	100	13	11.5	-	-	-	T	31655159	G	T	31655159	3	4	275	1	0	0	0	0	1	0	0	0	8596	942	33	2	676	2	KRTAP24-1	21	31655159	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	597	31655159	16474736	4863	30550										
TIAM1	0	genome.wustl.edu	37	chr21	32624209	32624209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaggatgtccgactggccCggagagctcagggtgccgct	16	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	32624209	32624209	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	silent	c.1260	p.P420	0.896	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	41	0	0	19	9	32.14	-	-	-	T	32624209	C	T	32624209	2	4	275	1	0	0	0	0	0	0	0	1	15985	639	23	1		1	TIAM1	21	32624209	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	969050	32624209	15505686	4864	30551										
TIAM1	0	genome.wustl.edu	37	chr21	32639114	32639114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggatgctgggggtgctgcTggatcgggtgctcacttcgg	20	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	32639114	32639114	T	C	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.175	p.S59G	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	91	0	0	79	13	14.13	-	-	-	C	32639114	T	C	32639114	3	2	275	1	0	0	0	0	1	0	0	0	15985	1580	55	5	4700	5	TIAM1	21	32639114	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	14905	32639114	15490781	4865	30552										
HUNK	0	genome.wustl.edu	37	chr21	33312492	33312492	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagagacttgaagatagaGaatttgctactagatgaaga	10	4	1	7			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	33312492	33312492	G	T	SNP	HUNK	ENST00000270112	human	ensembl	69_37n	1	known	missense	c.570	p.E190D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	359	0	0	248	32	11.43	-	-	-	T	33312492	G	T	33312492	3	4	275	1	0	0	0	0	1	0	0	0	7512	933	33	2	580	2	HUNK	21	33312492	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	673378	33312492	14817403	4866	30553										
MRAP	0	genome.wustl.edu	37	chr21	33671320	33671320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcctctgccccatactacaGctatgaatactacctggact	6	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	33671320	33671320	G	T	SNP	MRAP	ENST00000303645	human	ensembl	69_37n	1	known	missense	c.38	p.S13I	0.738	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262	162	0	0	86	13	13.13	-	-	-	T	33671320	G	T	33671320	3	4	275	1	0	0	0	0	1	0	0	0	9825	971	34	4	40	4	MRAP	21	33671320	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	358828	33671320	14458575	4867	30554										
GART	0	genome.wustl.edu	37	chr21	34877898	34877898	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttggacaaaggggccagaaaGaattctcatgaatcctgcaa	10	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	34877898	34877898	G	T	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	missense	c.2695	p.L899I	0.988	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,tigrfam_PurN_trans	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	188	0	0	223	27	10.8	-	-	-	T	34877898	G	T	34877898	3	4	275	1	0	0	0	0	1	0	0	0	6293	942	33	2	349	2	GART	21	34877898	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1206578	34877898	13251997	4868	30555										
DONSON	0	genome.wustl.edu	37	chr21	34953719	34953719	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttagagttaatcaaaaaAttgagcaatgtaaaggtgtt	8	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	34953719	34953719	A	C	SNP	DONSON	ENST00000303071	human	ensembl	69_37n	-1	known	missense	c.1239	p.N413K	1.000	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147	229	0	0	141	30	17.54	-	-	-	C	34953719	A	C	34953719	3	2	275	1	0	0	0	0	1	0	0	0	4741	98	4	5	473	5	DONSON	21	34953719	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	75821	34953719	13176176	4869	30556										
DONSON	0	genome.wustl.edu	37	chr21	34954523	34954523	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccttcttatggccactttCttttattaaaggcagagaaa	6	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	34954523	34954523	C	A	SNP	DONSON	ENST00000303071	human	ensembl	69_37n	-1	known	nonsense	c.994	p.E332*	1.000	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147	252	0	0	161	23	12.37	-	-	-	A	34954523	C	A	34954523	4	1	275	1	0	0	0	0	0	1	0	0	4741	922	32	2	726	2	DONSON	21	34954523	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	804	34954523	13175372	4870	30557										
ITSN1	0	genome.wustl.edu	37	chr21	35254747	35254747	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatcaaacctgcagtataaAatgtataaaacagtaagttg	6	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	35254747	35254747	A	C	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.4542	p.K1514N	0.997	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	71	0	0	80	33	29.2	-	-	-	C	35254747	A	C	35254747	3	2	275	1	0	0	0	0	1	0	0	0	7980	11	1	5	4682	5	ITSN1	21	35254747	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	300224	35254747	12875148	4871	30558										
SETD4	0	genome.wustl.edu	37	chr21	37431203	37431203	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatgctaaaactgtagtttCttttttctgaaatacagttc	6	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	37431203	37431203	C	A	SNP	SETD4	ENST00000481477	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.356	-	-	-	no_errors	SETD4	HGNC	ENSG00000185917	720	1	0.14	428	64	13.01	-	-	-	A	37431203	C	A	37431203	1	1	275	0	1	0	0	0	0	0	0	0	14221	928	32	2		2	SETD4	21	37431203	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2176456	37431203	10698692	4872	30559										
TTC3	0	genome.wustl.edu	37	chr21	38522384	38522384	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttaatcaaataggattttCtacaaggaatatgtcttacc	5	6	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	38522384	38522384	C	A	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.2125	p.L709I	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	140	0	0	94	30	24	-	-	-	A	38522384	C	A	38522384	3	1	275	1	0	0	0	0	1	0	0	0	16794	912	32	2	2215	2	TTC3	21	38522384	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1091181	38522384	9607511	4873	30560										
KCNJ6	0	genome.wustl.edu	37	chr21	39087043	39087043	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaataaaaaagcagagacGaacccgttgaggttggtaac	12	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	39087043	39087043	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	silent	c.417	p.F139	0.698	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	155	0	0	90	24	21.05	-	-	-	A	39087043	G	A	39087043	2	1	275	1	0	0	0	0	0	0	0	1	8109	1049	37	1		1	KCNJ6	21	39087043	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	564659	39087043	9042852	4874	30561										
KCNJ15	0	genome.wustl.edu	37	chr21	39671654	39671654	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcatcacgaccttgattgaGatcttcatcaccggaacctt	7	12	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	39671654	39671654	G	T	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.471	p.E157D	0.227	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	101	0	0	74	11	12.94	-	-	-	T	39671654	G	T	39671654	3	4	275	1	0	0	0	0	1	0	0	0	8103	933	33	2	473	2	KCNJ15	21	39671654	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	584611	39671654	8458241	4875	30562										
ERG	0	genome.wustl.edu	37	chr21	39947596	39947596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggacttaccttgatatgaGctgctgggtccgggacagtc	14	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	39947596	39947596	G	A	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	missense	c.29	p.A10V	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	251	0	0	192	34	15.04	-	-	-	A	39947596	G	A	39947596	3	1	275	1	0	0	0	0	1	0	0	0	5259	971	34	4	1493	4	ERG	21	39947596	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	275942	39947596	8182299	4876	30563										
ETS2	0	genome.wustl.edu	37	chr21	40194729	40194729	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcgctacgtgtaccgcttCgtgtgcgacctccagaactt	10	13	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	40194729	40194729	C	T	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	silent	c.1326	p.F442	0.989	pfam_Ets,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	176	0	0	79	34	30.09	-	-	-	T	40194729	C	T	40194729	2	4	275	1	0	0	0	0	0	0	0	1	5313	883	31	1		1	ETS2	21	40194729	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	247133	40194729	7935166	4877	30564										
BRWD1	0	genome.wustl.edu	37	chr21	40619685	40619685	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actcacgccagctacgatttCttctaccataatttggatat	5	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	40619685	40619685	C	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.2423	p.R808I	0.977	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	261	0	0	223	66	22.84	-	-	-	A	40619685	C	A	40619685	3	1	275	1	0	0	0	0	1	0	0	0	1533	913	32	2	4866	2	BRWD1	21	40619685	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	424956	40619685	7510210	4878	30565										
LCA5L	0	genome.wustl.edu	37	chr21	40783700	40783700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtattcgatgactatagatgTttttaatttcaagctcacga	7	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	40783700	40783700	T	C	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.1004	p.N335S	1.000	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	330	1	0.3	191	61	24.21	-	-	-	C	40783700	T	C	40783700	3	2	275	1	0	0	0	0	1	0	0	0	8711	1725	60	5	1024	5	LCA5L	21	40783700	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	164015	40783700	7346195	4879	30566										
SH3BGR	0	genome.wustl.edu	37	chr21	40834351	40834351	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttggaagcgaataaaatCgactttaaggaattagatat	8	3	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	40834351	40834351	C	T	SNP	SH3BGR	ENST00000452550	human	ensembl	69_37n	1	novel	nonsense	c.70	p.R24*	0.631	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH3BGR	HGNC	ENSG00000185437	448	0	0	304	45	12.86	-	-	-	T	40834351	C	T	40834351	4	4	275	1	0	0	0	0	0	1	0	0	14328	874	31	1	291	1	SH3BGR	21	40834351	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	50651	40834351	7295544	4880	30567										
SH3BGR	0	genome.wustl.edu	37	chr21	40883691	40883691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaagagcctggagaagacGaagattcctaggccttttca	12	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	40883691	40883691	G	A	SNP	SH3BGR	ENST00000333634	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	0.929	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437	490	0	0	287	86	22.99	-	-	-	A	40883691	G	A	40883691	3	1	275	1	0	0	0	0	1	0	0	0	14328	1059	37	1	731	1	SH3BGR	21	40883691	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49340	40883691	7246204	4881	30568										
IGSF5	0	genome.wustl.edu	37	chr21	41143007	41143007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attttgttccggagcccagcGaccttcaaagtgcagtgagc	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	41143007	41143007	G	A	SNP	IGSF5	ENST00000380588	human	ensembl	69_37n	1	novel	missense	c.583	p.D195N	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF5	HGNC	ENSG00000183067	174	0	0	109	17	13.18	-	-	-	A	41143007	G	A	41143007	3	1	275	1	0	0	0	0	1	0	0	0	7656	1058	37	1	597	1	IGSF5	21	41143007	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	259316	41143007	6986888	4882	30569										
UMODL1	0	genome.wustl.edu	37	chr21	43531084	43531084	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagcagccctcggcctagaGaacttcaccttgtcacccag	8	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	43531084	43531084	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.1752	p.E584D	0.660	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	29	0	0	25	12	32.43	-	-	-	T	43531084	G	T	43531084	3	4	275	1	0	0	0	0	1	0	0	0	17077	933	33	2	1794	2	UMODL1	21	43531084	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2388077	43531084	4598811	4883	30570										
UMODL1	0	genome.wustl.edu	37	chr21	43541250	43541250	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtgccggggacatcctgtCgaaacaccctcgggtctttc	12	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	43541250	43541250	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	nonsense	c.3127	p.R1043*	0.001	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	121	0	0	69	9	11.39	-	-	-	T	43541250	C	T	43541250	4	4	275	1	0	0	0	0	0	1	0	0	17077	876	31	1	3185	1	UMODL1	21	43541250	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10166	43541250	4588645	4884	30571										
RSPH1	0	genome.wustl.edu	37	chr21	43896054	43896054	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctggtcatactcccggctCtcttcccggaggacgtctgc	10	16	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	43896054	43896054	C	A	SNP	RSPH1	ENST00000291536	human	ensembl	69_37n	-1	known	missense	c.831	p.E277D	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188	120	0	0	60	7	10.45	-	-	-	A	43896054	C	A	43896054	3	1	275	1	0	0	0	0	1	0	0	0	13788	912	32	2	106	2	RSPH1	21	43896054	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	354804	43896054	4233841	4885	30572										
CBS	0	genome.wustl.edu	37	chr21	44488638	44488638	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagagctcacacttcaggccGaacttcttcccaatcttgtt	6	14	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	44488638	44488638	G	A	SNP	CBS	ENST00000398168	human	ensembl	69_37n	-1	known	silent	c.297	p.F99	0.047	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Cysta_beta_synth	pfam_PyrdxlP-dep_enz_bsu,pfam_Cysta_beta_synth_core,superfamily_PyrdxlP-dep_enz_bsu,smart_Cysta_beta_synth_core,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200	63	0	0	26	10	27.78	-	-	-	A	44488638	G	A	44488638	2	1	275	1	0	0	0	0	0	0	0	1	2736	1049	37	1		1	CBS	21	44488638	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	592584	44488638	3641257	4886	30573										
RRP1	0	genome.wustl.edu	37	chr21	45212608	45212608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcttttcagaccacggaggCgcgtgagtatgctctgctgt	13	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	45212608	45212608	C	T	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	1	known	missense	c.272	p.A91V	0.991	pfam_Nop52	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	130	0	0	79	11	12.22	-	-	-	T	45212608	C	T	45212608	3	4	275	1	0	0	0	0	1	0	0	0	13771	768	27	1	282	1	RRP1	21	45212608	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	723970	45212608	2917287	4887	30574										
KRTAP10-10	0	genome.wustl.edu	37	chr21	46057509	46057509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgccagacggcctgtgagCccagcgcctgccaatcaggc	13	16	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	46057509	46057509	C	T	SNP	KRTAP10-10	ENST00000380095	human	ensembl	69_37n	1	known	missense	c.175	p.P59S	0.002	NULL	NULL	-	no_errors	KRTAP10-10	HGNC	ENSG00000221859	218	0	0	174	32	15.53	-	-	-	T	46057509	C	T	46057509	3	4	275	1	0	0	0	0	1	0	0	0	8559	739	26	4	177	4	KRTAP10-10	21	46057509	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	844901	46057509	2072386	4888	30575										
ITGB2	0	genome.wustl.edu	37	chr21	46306786	46306786	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgccacggtgcccccgacGatggcggcgatgttggggcc	16	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	46306786	46306786	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	silent	c.2112	p.I704	0.974	pirsf_Integrin_bsu,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	27	0	0	10	4	28.57	-	-	-	A	46306786	G	A	46306786	2	1	275	1	0	0	0	0	0	0	0	1	7948	1048	37	1		1	ITGB2	21	46306786	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	249277	46306786	1823109	4889	30576										
ITGB2	0	genome.wustl.edu	37	chr21	46330268	46330268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagctgctgaccttgaacttCgtgcactcctgagagaggac	11	12	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	46330268	46330268	C	T	SNP	ITGB2	ENST00000523323	human	ensembl	69_37n	-1	known	missense	c.121	p.E41K	0.998	NULL	NULL	-	no_errors	ITGB2	HGNC	ENSG00000160255	66	0	0	36	6	13.95	-	-	-	T	46330268	C	T	46330268	3	4	275	1	0	0	0	0	1	0	0	0	7948	871	31	1	2287	1	ITGB2	21	46330268	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	23482	46330268	1799627	4890	30577										
MCM3AP	0	genome.wustl.edu	37	chr21	47655303	47655303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcctagacacgttcctgtcGcctctgacagctgcagttgc	10	15	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	47655303	47655303	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.5822	p.A1941V	0.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	166	0	0	103	42	28.97	-	-	-	A	47655303	G	A	47655303	3	1	275	1	0	0	0	0	1	0	0	0	9459	1087	38	1	124	1	MCM3AP	21	47655303	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1325035	47655303	474592	4891	30578										
PCNT	0	genome.wustl.edu	37	chr21	47786993	47786993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctgtgcgggaccacctgcGaaccgaagtgagcacagagc	14	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	47786993	47786993	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.3104	p.R1035Q	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	28	0	0	19	8	29.63	-	-	-	A	47786993	G	A	47786993	3	1	275	1	0	0	0	0	1	0	0	0	11663	1058	37	1	3162	1	PCNT	21	47786993	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	131690	47786993	342902	4892	30579										
PCNT	0	genome.wustl.edu	37	chr21	47851831	47851831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagcagcaagccctgcattCtcagcagcagcttgaggctg	12	13	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	21	47851831	47851831	C	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.8453	p.S2818Y	0.206	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	85	0	0	41	12	22.64	-	-	-	A	47851831	C	A	47851831	3	1	275	1	0	0	0	0	1	0	0	0	11663	913	32	2	8603	2	PCNT	21	47851831	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	64838	47851831	278064	4893	30580										
OR11H1	0	genome.wustl.edu	37	chr22	16449102	16449102	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caacatagctttcaggacaaGagtataggatccaataataa	7	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	16449102	16449102	G	T	SNP	OR11H1	ENST00000252835	human	ensembl	69_37n	-1	known	missense	c.703	p.L235I	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538	545	0	0	441	145	24.7	-	-	-	T	16449102	G	T	16449102	3	4	275	1	0	0	0	0	1	0	0	0	10999	942	33	2	279	2	OR11H1	22	16449102	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		16449102	34855464	4894	30581										
CCT8L2	0	genome.wustl.edu	37	chr22	17071818	17071818	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccacaggaggtgggtgtttCtttgtcttcttagagtcagg	13	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	17071818	17071818	C	A	SNP	CCT8L2	ENST00000359963	human	ensembl	69_37n	-1	known	missense	c.1623	p.K541N	0.002	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	95	0	0	93	37	28.46	-	-	-	A	17071818	C	A	17071818	3	1	275	1	0	0	0	0	1	0	0	0	2990	912	32	2	54	2	CCT8L2	22	17071818	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	622716	17071818	34232748	4895	30582										
XKR3	0	genome.wustl.edu	37	chr22	17280897	17280897	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaaccatttgtggtaatttCtaatggtgtgcaaacacctg	8	8	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	17280897	17280897	C	A	SNP	XKR3	ENST00000331428	human	ensembl	69_37n	-1	known	missense	c.353	p.R118I	0.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR3	HGNC	ENSG00000172967	397	0	0	161	69	30	-	-	-	A	17280897	C	A	17280897	3	1	275	1	0	0	0	0	1	0	0	0	17529	913	32	2	1034	2	XKR3	22	17280897	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	209079	17280897	34023669	4896	30583										
CECR2	0	genome.wustl.edu	37	chr22	18022188	18022188	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctacgaaccaaggacccTtgggcccagatgagaagccc	12	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18022188	18022188	T	G	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.2290	p.L764V	0.898	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	88	0	0	59	16	21.33	-	-	-	G	18022188	T	G	18022188	3	3	275	1	0	0	0	0	1	0	0	0	3235	1606	56	5	2350	5	CECR2	22	18022188	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	741291	18022188	33282378	4897	30584										
CECR2	0	genome.wustl.edu	37	chr22	18028573	18028573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctaccaccactatcagcGaactccttactatgcctgtc	4	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18028573	18028573	G	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.3530	p.R1177Q	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	116	0	0	81	13	13.54	-	-	-	A	18028573	G	A	18028573	3	1	275	1	0	0	0	0	1	0	0	0	3235	1058	37	1	3594	1	CECR2	22	18028573	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6385	18028573	33275993	4898	30585										
CECR2	0	genome.wustl.edu	37	chr22	18028750	18028750	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actgaatgctgccttaacttCtccaacccgtatggatgcag	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18028750	18028750	C	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.3707	p.S1236Y	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	81	0	0	64	15	18.99	-	-	-	A	18028750	C	A	18028750	3	1	275	1	0	0	0	0	1	0	0	0	3235	913	32	2	3771	2	CECR2	22	18028750	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	177	18028750	33275816	4899	30586										
CECR2	0	genome.wustl.edu	37	chr22	18029209	18029209	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatggaacaaattggcactaGaagtggaataagaggacctt	12	5	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18029209	18029209	G	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.4166	p.R1389I	0.896	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	95	0	0	92	12	11.54	-	-	-	T	18029209	G	T	18029209	3	4	275	1	0	0	0	0	1	0	0	0	3235	942	33	2	4230	2	CECR2	22	18029209	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	459	18029209	33275357	4900	30587										
MICAL3	0	genome.wustl.edu	37	chr22	18383700	18383700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagcttctgctgttgtatttCggttgataaaatttgccgtg	10	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18383700	18383700	C	T	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.755	p.R252Q	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	353	0	0	246	74	23.05	-	-	-	T	18383700	C	T	18383700	3	4	275	1	0	0	0	0	1	0	0	0	9642	884	31	1	6098	1	MICAL3	22	18383700	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	354491	18383700	32920866	4901	30588										
TUBA8	0	genome.wustl.edu	37	chr22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgctttcatggtggacaacGaagccatctatgacatctgc	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	18609364	18609364	G	A	SNP	TUBA8	ENST00000330423	human	ensembl	69_37n	1	known	missense	c.619	p.E207K	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA8	HGNC	ENSG00000183785	255	0	0	207	85	29.01	-	-	-	A	18609364	G	A	18609364	3	1	275	1	0	0	0	0	1	0	0	0	16847	1059	37	1	633	1	TUBA8	22	18609364	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	225664	18609364	32695202	4902	30589										
HIRA	0	genome.wustl.edu	37	chr22	19338952	19338952	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taagtccttgcatatttctcGaagtcggtattcaaacccta	6	10	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	19338952	19338952	G	A	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	nonsense	c.2866	p.R956*	0.972	pfam_Hira	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	85	0	0	52	6	10.34	-	-	-	A	19338952	G	A	19338952	4	1	275	1	0	0	0	0	0	1	0	0	7171	1066	37	1	195	1	HIRA	22	19338952	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	729588	19338952	31965614	4903	30590										
HIRA	0	genome.wustl.edu	37	chr22	19396057	19396057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaatattttcatccttctCgtcatcctcctggaggactg	9	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	19396057	19396057	C	T	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	missense	c.160	p.E54K	1.000	superfamily_WD40_repeat_dom	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	207	0	0	164	23	12.3	-	-	-	T	19396057	C	T	19396057	3	4	275	1	0	0	0	0	1	0	0	0	7171	893	31	1	2985	1	HIRA	22	19396057	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	57105	19396057	31908509	4904	30591										
DGCR8	0	genome.wustl.edu	37	chr22	20079483	20079483	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccgccctgtctataatttCtttgaatgtggtaagtctaa	8	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	20079483	20079483	C	A	SNP	DGCR8	ENST00000351989	human	ensembl	69_37n	1	known	missense	c.1596	p.F532L	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Ds-RNA-bd,pfscan_WW_Rsp5_WWP,pfscan_Ds-RNA-bd	-	no_errors	DGCR8	HGNC	ENSG00000128191	360	0	0	431	95	18.03	-	-	-	A	20079483	C	A	20079483	3	1	275	1	0	0	0	0	1	0	0	0	4500	912	32	2	1618	2	DGCR8	22	20079483	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	683426	20079483	31225083	4905	30592										
RANBP1	0	genome.wustl.edu	37	chr22	20113872	20113872	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagaatgcaggaaagagatCgaagagagagaaaagaaagg	15	2	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	20113872	20113872	C	T	SNP	RANBP1	ENST00000331821	human	ensembl	69_37n	1	known	silent	c.486	p.I162	0.030	pfscan_Ran_bind_dom	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP1	HGNC	ENSG00000099901	50	0	0	27	9	25	-	-	-	T	20113872	C	T	20113872	2	4	275	1	0	0	0	0	0	0	0	1	13108	874	31	1		1	RANBP1	22	20113872	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	34389	20113872	31190694	4906	30593										
KLHL22	0	genome.wustl.edu	37	chr22	20819207	20819207	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcccctccaatcaagtatacGaagttgttgagcaccgcgat	8	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	20819207	20819207	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	69_37n	-1	known	silent	c.1050	p.F350	0.886	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910	50	0	0	53	8	13.11	-	-	-	A	20819207	G	A	20819207	2	1	275	1	0	0	0	0	0	0	0	1	8430	1049	37	1		1	KLHL22	22	20819207	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	705335	20819207	30485359	4907	30594										
SLC7A4	0	genome.wustl.edu	37	chr22	21385348	21385348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actggaggcggcaatgacgtCgaagcccacgaaagcataga	13	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	21385348	21385348	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	69_37n	-1	known	missense	c.754	p.D252N	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960	35	0	0	22	5	18.52	-	-	-	T	21385348	C	T	21385348	3	4	275	1	0	0	0	0	1	0	0	0	14788	884	31	1	1169	1	SLC7A4	22	21385348	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	566141	21385348	29919218	4908	30595										
SLC7A4	0	genome.wustl.edu	37	chr22	21385748	21385748	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgaggagaacattccagccGatgaggaaggcccacagctc	12	12	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	21385748	21385748	G	A	SNP	SLC7A4	ENST00000382932	human	ensembl	69_37n	-1	known	silent	c.354	p.I118	0.228	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960	46	0	0	22	14	38.89	-	-	-	A	21385748	G	A	21385748	2	1	275	1	0	0	0	0	0	0	0	1	14788	1048	37	1		1	SLC7A4	22	21385748	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	400	21385748	29918818	4909	30596										
UBE2L3	0	genome.wustl.edu	37	chr22	21947188	21947188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaatgtgggatgaaaaacttCcgtaacatccaggttgatga	10	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	21947188	21947188	C	A	SNP	UBE2L3	ENST00000458578	human	ensembl	69_37n	1	known	missense	c.240	p.F80L	1.000	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L3	HGNC	ENSG00000185651	480	0	0	433	78	15.26	-	-	-	A	21947188	C	A	21947188	3	1	275	1	0	0	0	0	1	0	0	0	16960	854	30	2	72	2	UBE2L3	22	21947188	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	561440	21947188	29357378	4910	30597										
ZNF280A	0	genome.wustl.edu	37	chr22	22868692	22868692	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaacagacaaagcaaattCtttgtgttttcatggcacgt	7	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	22868692	22868692	C	A	SNP	ZNF280A	ENST00000302097	human	ensembl	69_37n	-1	known	missense	c.1263	p.K421N	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548	160	1	0.62	133	55	29.26	-	-	-	A	22868692	C	A	22868692	3	1	275	1	0	0	0	0	1	0	0	0	17910	912	32	2	369	2	ZNF280A	22	22868692	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	921504	22868692	28435874	4911	30598										
ZNF280A	0	genome.wustl.edu	37	chr22	22869496	22869496	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcatttctgcctcctccagaGaccatagctccaactagaca	5	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	22869496	22869496	G	T	SNP	ZNF280A	ENST00000302097	human	ensembl	69_37n	-1	known	silent	c.459	p.V153	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548	119	0	0	82	28	25.45	-	-	-	T	22869496	G	T	22869496	2	4	275	1	0	0	0	0	0	0	0	1	17910	929	33	2		2	ZNF280A	22	22869496	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	804	22869496	28435070	4912	30599										
GNAZ	0	genome.wustl.edu	37	chr22	23437979	23437979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagccagcggcaacgccgcGaaatcaagctgctcctgctg	12	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	23437979	23437979	G	A	SNP	GNAZ	ENST00000248996	human	ensembl	69_37n	1	known	missense	c.97	p.E33K	0.999	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	9	0	0	7	4	36.36	-	-	-	A	23437979	G	A	23437979	3	1	275	1	0	0	0	0	1	0	0	0	6566	1059	37	1	99	1	GNAZ	22	23437979	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	568483	23437979	27866587	4913	30600										
GGT5	0	genome.wustl.edu	37	chr22	24622608	24622608	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaacctcacctggagcttCgggtggcttcgagggtcccc	13	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	24622608	24622608	C	T	SNP	GGT5	ENST00000398292	human	ensembl	69_37n	-1	known	silent	c.1029	p.P343	0.001	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998	180	0	0	86	25	22.52	-	-	-	T	24622608	C	T	24622608	2	4	275	1	0	0	0	0	0	0	0	1	6414	871	31	1		1	GGT5	22	24622608	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1184629	24622608	26681958	4914	30601										
C22orf13	0	genome.wustl.edu	37	chr22	24942921	24942921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcaggcctttgcttgtgcaAacagctgattcacccgggtc	11	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	24942921	24942921	A	C	SNP	C22orf13	ENST00000407471	human	ensembl	69_37n	-1	known	missense	c.347	p.F116C	1.000	pfam_Guanylyl_cyclase	pfam_Guanylyl_cyclase	-	no_errors	C22orf13	HGNC	ENSG00000138867	164	0	0	135	33	19.64	-	-	-	C	24942921	A	C	24942921	3	2	275	1	0	0	0	0	1	0	0	0	2155	14	1	5	387	5	C22orf13	22	24942921	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	320313	24942921	26361645	4915	30602										
PIWIL3	0	genome.wustl.edu	37	chr22	25152477	25152477	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccgctcttttagtggccgaGataataataaagagtttcca	8	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	25152477	25152477	G	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.551	p.S184Y	0.003	superfamily_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	389	1	0.26	351	39	10	-	-	-	T	25152477	G	T	25152477	3	4	275	1	0	0	0	0	1	0	0	0	12033	942	33	2	2165	2	PIWIL3	22	25152477	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	209556	25152477	26152089	4916	30603										
CRYBB3	0	genome.wustl.edu	37	chr22	25603143	25603143	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcgccgcatccgtgaccaGaagtggcacaagcggggccg	16	13	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	25603143	25603143	G	T	SNP	CRYBB3	ENST00000215855	human	ensembl	69_37n	1	known	missense	c.600	p.Q200H	1.000	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053	26	0	0	11	6	35.29	-	-	-	T	25603143	G	T	25603143	3	4	275	1	0	0	0	0	1	0	0	0	3942	933	33	2	618	2	CRYBB3	22	25603143	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	450666	25603143	25701423	4917	30604										
LRP5L	0	genome.wustl.edu	37	chr22	25750759	25750759	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaggagggtctgcctcttCgtctcatcgacactgatcgc	10	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	25750759	25750759	C	T	SNP	LRP5L	ENST00000402785	human	ensembl	69_37n	-1	known	silent	c.459	p.T153	0.904	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5L	HGNC	ENSG00000100068	115	0	0	49	22	30.99	-	-	-	T	25750759	C	T	25750759	2	4	275	1	0	0	0	0	0	0	0	1	9027	871	31	1		1	LRP5L	22	25750759	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	147616	25750759	25553807	4918	30605										
MYO18B	0	genome.wustl.edu	37	chr22	26166842	26166842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgggatgtccaaccagctaCggtgctaaagccagatgagg	13	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	26166842	26166842	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.1583	p.T528M	0.934	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	295	0	0	225	38	14.29	-	-	-	T	26166842	C	T	26166842	3	4	275	1	0	0	0	0	1	0	0	0	10138	536	19	1	1601	1	MYO18B	22	26166842	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	416083	26166842	25137724	4919	30606										
HPS4	0	genome.wustl.edu	37	chr22	26854463	26854463	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgaagttgtaggtgctgctCgtggaggctgcctcatccct	14	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	26854463	26854463	C	T	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	silent	c.1833	p.T611	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	103	0	0	56	8	12.5	-	-	-	T	26854463	C	T	26854463	2	4	275	1	0	0	0	0	0	0	0	1	7392	871	31	1		1	HPS4	22	26854463	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	687621	26854463	24450103	4920	30607										
AP1B1	0	genome.wustl.edu	37	chr22	29750740	29750740	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggggccagcttcttgagcagTgtgccgtagtagtccaagtc	14	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	29750740	29750740	T	C	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.837	p.T279	0.434	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,smart_Armadillo,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	101	0	0	93	11	10.48	-	-	-	C	29750740	T	C	29750740	2	2	275	1	0	0	0	0	0	0	0	1	732	1683	59	5		5	AP1B1	22	29750740	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2896277	29750740	21553826	4921	30608										
NEFH	0	genome.wustl.edu	37	chr22	29885311	29885311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaggaagaggcaaagtcacCgcctgaggccaagtccccag	12	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	29885311	29885311	C	T	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.1682	p.P561L	0.161	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	207	0	0	226	79	25.9	-	-	-	T	29885311	C	T	29885311	3	4	275	1	0	0	0	0	1	0	0	0	10386	652	23	1	1696	1	NEFH	22	29885311	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	134571	29885311	21419255	4922	30609										
UQCR10	0	genome.wustl.edu	37	chr22	30163495	30163495	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgttcttcgagcgcgccttCgatcaaggcgcggacgctat	12	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	30163495	30163495	C	T	SNP	UQCR10	ENST00000330029	human	ensembl	69_37n	1	known	silent	c.108	p.F36	1.000	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	-	no_errors	UQCR10	HGNC	ENSG00000184076	98	0	0	58	12	17.14	-	-	-	T	30163495	C	T	30163495	2	4	275	1	0	0	0	0	0	0	0	1	17113	883	31	1		1	UQCR10	22	30163495	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	278184	30163495	21141071	4923	30610										
DUSP18	0	genome.wustl.edu	37	chr22	31059441	31059441	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctcacagtggaatcatcaAacggacttccttctcataga	8	11	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	31059441	31059441	A	C	SNP	DUSP18	ENST00000334679	human	ensembl	69_37n	-1	known	missense	c.550	p.L184V	0.001	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP18	HGNC	ENSG00000167065	131	0	0	75	37	33.04	-	-	-	C	31059441	A	C	31059441	3	2	275	1	0	0	0	0	1	0	0	0	4852	11	1	5	20	5	DUSP18	22	31059441	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	895946	31059441	20245125	4924	30611										
PISD	0	genome.wustl.edu	37	chr22	32015676	32015676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaagtccttgggggcctcGaagatgagcacgatggtgga	16	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	32015676	32015676	G	A	SNP	PISD	ENST00000435900	human	ensembl	69_37n	-1	novel	missense	c.1010	p.S337L	0.091	pfam_PS_Dcarbxylase	pfam_PS_Dcarbxylase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PISD	HGNC	ENSG00000241878	177	0	0	84	10	10.53	-	-	-	A	32015676	G	A	32015676	3	1	275	1	0	0	0	0	1	0	0	0	12020	1049	37	1	81	1	PISD	22	32015676	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	956235	32015676	19288890	4925	30612										
DEPDC5	0	genome.wustl.edu	37	chr22	32188763	32188763	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaataaaccgagcctcaattCgacaggatcacaaggggaga	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	32188763	32188763	C	T	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	nonsense	c.727	p.R243*	1.000	pfam_DUF3608	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	401	0	0	307	43	12.25	-	-	-	T	32188763	C	T	32188763	4	4	275	1	0	0	0	0	0	1	0	0	4478	876	31	1	769	1	DEPDC5	22	32188763	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	173087	32188763	19115803	4926	30613										
C22orf24	0	genome.wustl.edu	37	chr22	32330257	32330257	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttattgagcacctgctataTgccaagcacagtgcgaggct	10	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	32330257	32330257	T	C	SNP	C22orf24	ENST00000543051	human	ensembl	69_37n	-1	known	silent	c.531	p.A177	0.054	NULL	NULL	-	no_errors	C22orf24	HGNC	ENSG00000128254	183	0	0	159	24	13.11	-	-	-	C	32330257	T	C	32330257	2	2	275	1	0	0	0	0	0	0	0	1	2158	1451	51	5		5	C22orf24	22	32330257	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	141494	32330257	18974309	4927	30614										
SLC5A1	0	genome.wustl.edu	37	chr22	32439355	32439355	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attcgcaatgcagccgatatCtccatcatcgttatctactt	5	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	32439355	32439355	C	A	SNP	SLC5A1	ENST00000266088	human	ensembl	69_37n	1	known	silent	c.87	p.I29	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A1	HGNC	ENSG00000100170	249	0	0	114	27	19.01	-	-	-	A	32439355	C	A	32439355	2	1	275	1	0	0	0	0	0	0	0	1	14750	903	32	2		2	SLC5A1	22	32439355	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	109098	32439355	18865211	4928	30615										
HMGXB4	0	genome.wustl.edu	37	chr22	35659155	35659156	+	Frame_Shift_Ins	INS	-	-	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaacgttcttacaaagaINSttttttaagggaagaggaag							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	35659155	35659156	-	T	INS	HMGXB4	ENST00000216106	human	ensembl	69_37n	1	known	frame_shift_ins	c.116_117	p.L41fs	1.000:1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	77	0	0	41	13	24.07	-	-	-	T	35659156	-	T	35659155	7	5	275	1	0	1	1	0	0	0	0	0	7290	333	12	0	122	0	HMGXB4	22	35659155	Frame_Shift_Ins	INS	-	TCGA-AN-A046-01A-21W-A050-09	3219800	35659155	15645411	4929	30616										
APOL4	0	genome.wustl.edu	37	chr22	36595647	36595647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctcacaccaaggaaaagtcCgcttgtcctgttggagaatg	10	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	36595647	36595647	C	T	SNP	APOL4	ENST00000328429	human	ensembl	69_37n	-1	known	missense	c.43	p.G15R	0.000	NULL	NULL	-	no_errors	APOL4	HGNC	ENSG00000100336	27	0	0	32	4	11.11	-	-	-	T	36595647	C	T	36595647	3	4	275	1	0	0	0	0	1	0	0	0	810	667	23	1		1	APOL4	22	36595647	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	936492	36595647	14708919	4930	30617										
EIF3D	0	genome.wustl.edu	37	chr22	36919318	36919318	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctggaactttttctgcagtcGaatgcgttctctggaaagac	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	36919318	36919318	G	A	SNP	EIF3D	ENST00000216190	human	ensembl	69_37n	-1	known	nonsense	c.403	p.R135*	0.999	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	-	no_errors	EIF3D	HGNC	ENSG00000100353	272	0	0	202	30	12.88	-	-	-	A	36919318	G	A	36919318	4	1	275	1	0	0	0	0	0	1	0	0	5051	1066	37	1	1283	1	EIF3D	22	36919318	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	323671	36919318	14385248	4931	30618										
NCF4	0	genome.wustl.edu	37	chr22	37263476	37263476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggagatcgccgagatgcGgatacctgccctcaacgcct	11	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	37263476	37263476	G	A	SNP	NCF4	ENST00000397147	human	ensembl	69_37n	1	known	missense	c.314	p.R105Q	0.959	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF4	HGNC	ENSG00000100365	82	0	0	50	6	10.71	-	-	-	A	37263476	G	A	37263476	3	1	275	1	0	0	0	0	1	0	0	0	10290	1116	39	1	328	1	NCF4	22	37263476	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	344158	37263476	14041090	4932	30619										
C1QTNF6	0	genome.wustl.edu	37	chr22	37578279	37578279	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaaggtgatgtaggtgtcGaagtcgttgctgtagatggc	16	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	37578279	37578279	G	A	SNP	C1QTNF6	ENST00000337843	human	ensembl	69_37n	-1	known	silent	c.786	p.F262	0.425	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466	78	0	0	51	9	15	-	-	-	A	37578279	G	A	37578279	2	1	275	1	0	0	0	0	0	0	0	1	1986	1049	37	1		1	C1QTNF6	22	37578279	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	314803	37578279	13726287	4933	30620										
NOL12	0	genome.wustl.edu	37	chr22	38083950	38083950	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcttccacaagcggaaggtCgagcgaaagaaggcagccat	14	10	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	38083950	38083950	C	T	SNP	NOL12	ENST00000359114	human	ensembl	69_37n	1	known	silent	c.117	p.V39	0.998	pfam_Nucleolar_protein_12	pfam_Nucleolar_protein_12	-	no_errors	NOL12	HGNC	ENSG00000256872	34	0	0	14	5	26.32	-	-	-	T	38083950	C	T	38083950	2	4	275	1	0	0	0	0	0	0	0	1	10594	871	31	1		1	NOL12	22	38083950	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	505671	38083950	13220616	4934	30621										
MICALL1	0	genome.wustl.edu	37	chr22	38307960	38307960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccctttgcctcttgcagaGattttgattcgctttccaag	7	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	38307960	38307960	G	T	SNP	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	missense	c.148	p.D50Y	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	170	0	0	120	48	28.57	-	-	-	T	38307960	G	T	38307960	3	4	275	1	0	0	0	0	1	0	0	0	9644	956	33	2	154	2	MICALL1	22	38307960	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	224010	38307960	12996606	4935	30622										
SOX10	0	genome.wustl.edu	37	chr22	38370135	38370135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggagcgcccgtcccgcttCgggtctgccttgcccgactg	13	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	38370135	38370135	C	T	SNP	SOX10	ENST00000446929	human	ensembl	69_37n	-1	putative	missense	c.398	p.R133Q	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SOX10	HGNC	ENSG00000100146	112	0	0	55	8	12.7	-	-	-	T	38370135	C	T	38370135	3	4	275	1	0	0	0	0	1	0	0	0	15030	871	31	1	636	1	SOX10	22	38370135	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	62175	38370135	12934431	4936	30623										
SUN2	0	genome.wustl.edu	37	chr22	39146366	39146366	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggctcagtctctgtcactttCgagcctcttccttcactgtc	7	15	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	39146366	39146366	C	T	SNP	SUN2	ENST00000405018	human	ensembl	69_37n	-1	novel	silent	c.447	p.S149	0.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	24	0	0	10	3	21.43	-	-	-	T	39146366	C	T	39146366	2	4	275	1	0	0	0	0	0	0	0	1	15483	899	31	1		1	SUN2	22	39146366	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	776231	39146366	12158200	4937	30624										
APOBEC3G	0	genome.wustl.edu	37	chr22	39474970	39474970	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgaatgtatcgagacacattCtcctacaacttttataatag	5	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	39474970	39474970	C	A	SNP	APOBEC3G	ENST00000407997	human	ensembl	69_37n	1	known	missense	c.51	p.F17L	0.006	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713	203	0	0	105	17	13.93	-	-	-	A	39474970	C	A	39474970	3	1	275	1	0	0	0	0	1	0	0	0	796	912	32	2	57	2	APOBEC3G	22	39474970	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	328604	39474970	11829596	4938	30625										
APOBEC3G	0	genome.wustl.edu	37	chr22	39477143	39477143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttgcccgcctctactactTctgggacccagattaccagg	9	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	39477143	39477143	T	G	SNP	APOBEC3G	ENST00000407997	human	ensembl	69_37n	1	known	missense	c.377	p.F126C	0.000	superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713	137	0	0	89	21	18.92	-	-	-	G	39477143	T	G	39477143	3	3	275	1	0	0	0	0	1	0	0	0	796	1783	62	5	387	5	APOBEC3G	22	39477143	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2173	39477143	11827423	4939	30626										
SMCR7L	0	genome.wustl.edu	37	chr22	39910015	39910015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccaggctgactcgggctgccGatctctgtgcctcaagatcc	11	15	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	39910015	39910015	G	A	SNP	SMCR7L	ENST00000325301	human	ensembl	69_37n	1	known	missense	c.1079	p.R360Q	1.000	NULL	NULL	-	no_errors	SMCR7L	HGNC	ENSG00000100335	26	0	0	28	4	12.5	-	-	-	A	39910015	G	A	39910015	3	1	275	1	0	0	0	0	1	0	0	0	14880	1058	37	1	1093	1	SMCR7L	22	39910015	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	432872	39910015	11394551	4940	30627										
ENTHD1	0	genome.wustl.edu	37	chr22	40139873	40139873	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagaacactaatggaattCtttgcttcaggttcctgggg	10	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	40139873	40139873	C	A	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	missense	c.1635	p.K545N	0.000	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	179	0	0	147	65	30.66	-	-	-	A	40139873	C	A	40139873	3	1	275	1	0	0	0	0	1	0	0	0	5174	912	32	2	192	2	ENTHD1	22	40139873	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	229858	40139873	11164693	4941	30628										
DNAJB7	0	genome.wustl.edu	37	chr22	41257857	41257857	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgtatgcctcagctacttCtttgaattttctctctgctt	5	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	41257857	41257857	C	A	SNP	DNAJB7	ENST00000307221	human	ensembl	69_37n	-1	known	nonsense	c.142	p.E48*	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ConA-like_lec_gl,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB7	HGNC	ENSG00000172404	275	0	0	234	34	12.64	-	-	-	A	41257857	C	A	41257857	4	1	275	1	0	0	0	0	0	1	0	0	4660	922	32	2	791	2	DNAJB7	22	41257857	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1117984	41257857	10046709	4942	30629										
ACO2	0	genome.wustl.edu	37	chr22	41924524	41924524	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccccaacgggacccaggaGaccatcctcctgaaccacac	7	19	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	41924524	41924524	G	T	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	missense	c.2250	p.E750D	1.000	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	171	0	0	84	30	26.32	-	-	-	T	41924524	G	T	41924524	3	4	275	1	0	0	0	0	1	0	0	0	147	933	33	2	2320	2	ACO2	22	41924524	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	666667	41924524	9380042	4943	30630										
MEI1	0	genome.wustl.edu	37	chr22	42128318	42128318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catagagctgcacaagcaggGcctgctgcttttcgctgaaa	11	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	42128318	42128318	G	A	SNP	MEI1	ENST00000401548	human	ensembl	69_37n	1	known	missense	c.1166	p.G389D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	254	0	0	226	78	25.41	-	-	-	A	42128318	G	A	42128318	3	1	275	1	0	0	0	0	1	0	0	0	9536	1203	42	4	1204	4	MEI1	22	42128318	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	203794	42128318	9176248	4944	30631										
CYP2D6	0	genome.wustl.edu	37	chr22	42524867	42524867	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagcgagggtcgtcgtactcGaagcggcgcccgcaggtgag	17	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	42524867	42524867	G	A	SNP	CYP2D6	ENST00000360608	human	ensembl	69_37n	-1	known	silent	c.585	p.F195	0.340	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197	130	0	0	43	11	20	-	-	-	A	42524867	G	A	42524867	2	1	275	1	0	0	0	0	0	0	0	1	4200	1049	37	1		1	CYP2D6	22	42524867	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	396549	42524867	8779699	4945	30632										
TTLL1	0	genome.wustl.edu	37	chr22	43465789	43465789	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatggttgactatttggtCatctgagagccgatatccag	10	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	43465789	43465789	C	A	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	missense	c.175	p.D59Y	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	281	0	0	176	53	23.14	-	-	-	A	43465789	C	A	43465789	3	1	275	1	0	0	0	0	1	0	0	0	16819	826	29	2	1128	2	TTLL1	22	43465789	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	940922	43465789	7838777	4946	30633										
EFCAB6	0	genome.wustl.edu	37	chr22	44064877	44064877	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctatgcatgccaaaagtttCttgtaaaggattcttcctga	7	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	44064877	44064877	C	A	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.1689	p.K563N	0.996	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	437	0	0	265	33	11.07	-	-	-	A	44064877	C	A	44064877	3	1	275	1	0	0	0	0	1	0	0	0	4974	912	32	2	2884	2	EFCAB6	22	44064877	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	599088	44064877	7239689	4947	30634										
SULT4A1	0	genome.wustl.edu	37	chr22	44221916	44221916	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacgtgaggtcacactttcCcatcttctgtttatacacca	5	12	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	44221916	44221916	C	A	SNP	SULT4A1	ENST00000330884	human	ensembl	69_37n	-1	known	nonsense	c.820	p.G274*	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT4A1	HGNC	ENSG00000130540	271	0	0	181	24	11.71	-	-	-	A	44221916	C	A	44221916	4	1	275	1	0	0	0	0	0	1	0	0	15474	632	22	4	38	4	SULT4A1	22	44221916	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	157039	44221916	7082650	4948	30635										
PPARA	0	genome.wustl.edu	37	chr22	46615733	46615733	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgttttggacgaatgccaaGatctgagaaagcaaaactga	10	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	46615733	46615733	G	T	SNP	PPARA	ENST00000262735	human	ensembl	69_37n	1	known	missense	c.533	p.R178I	0.971	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951	140	1	0.71	103	50	32.68	-	-	-	T	46615733	G	T	46615733	3	4	275	1	0	0	0	0	1	0	0	0	12370	942	33	2	547	2	PPARA	22	46615733	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2393817	46615733	4688833	4949	30636										
PKDREJ	0	genome.wustl.edu	37	chr22	46655146	46655146	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttactactcacatctataaaGaaaaagtcttttctagtcag	4	8	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	46655146	46655146	G	T	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.4074	p.F1358L	0.812	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	50	0	0	41	10	19.61	-	-	-	T	46655146	G	T	46655146	3	4	275	1	0	0	0	0	1	0	0	0	12044	933	33	2	2691	2	PKDREJ	22	46655146	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39413	46655146	4649420	4950	30637										
PKDREJ	0	genome.wustl.edu	37	chr22	46655510	46655510	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccccaacgacttcctgtaAaaatagtcaccaagtagcat	5	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	46655510	46655510	A	C	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.3710	p.F1237C	0.998	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	56	0	0	73	10	12.05	-	-	-	C	46655510	A	C	46655510	3	2	275	1	0	0	0	0	1	0	0	0	12044	14	1	5	3055	5	PKDREJ	22	46655510	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	364	46655510	4649056	4951	30638										
PKDREJ	0	genome.wustl.edu	37	chr22	46656456	46656456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacctccaccgaagtgttttCctgatcatttaaccaaggaa	6	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	46656456	46656456	C	T	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.2764	p.E922K	0.001	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	39	0	0	26	7	21.21	-	-	-	T	46656456	C	T	46656456	3	4	275	1	0	0	0	0	1	0	0	0	12044	864	30	2	4001	2	PKDREJ	22	46656456	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	946	46656456	4648110	4952	30639										
GRAMD4	0	genome.wustl.edu	37	chr22	47033801	47033801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taaccggacagagtttgatcGactgaatgagatcaaaggtc	11	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	47033801	47033801	G	A	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	missense	c.227	p.R76Q	0.999	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	47	0	0	16	5	22.73	-	-	-	A	47033801	G	A	47033801	3	1	275	1	0	0	0	0	1	0	0	0	6803	1058	37	1	233	1	GRAMD4	22	47033801	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	377345	47033801	4270765	4953	30640										
MOV10L1	0	genome.wustl.edu	37	chr22	50566920	50566920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actttgaacctatggatgtgGaatttacatataataggtaa	8	4	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	50566920	50566920	G	A	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.1894	p.E632K	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	93	0	0	93	16	14.68	-	-	-	A	50566920	G	A	50566920	3	1	275	1	0	0	0	0	1	0	0	0	9791	1175	41	2	1985	2	MOV10L1	22	50566920	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3533119	50566920	737646	4954	30641										
TUBGCP6	0	genome.wustl.edu	37	chr22	50671772	50671772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgaaaacgtggcagacacGaccccaatcaagacgttcag	10	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	50671772	50671772	G	A	SNP	TUBGCP6	ENST00000434349	human	ensembl	69_37n	-1	putative	missense	c.320	p.S107L	0.016	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TUBGCP6	HGNC	ENSG00000128159	45	0	0	28	7	20	-	-	-	A	50671772	G	A	50671772	3	1	275	1	0	0	0	0	1	0	0	0	16867	1045	37	1	4462	1	TUBGCP6	22	50671772	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	104852	50671772	632794	4955	30642										
CHKB	0	genome.wustl.edu	37	chr22	51018822	51018822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtggcagaagacgactggcGatggggtagactctagtaac	15	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	22	51018822	51018822	G	A	SNP	CHKB	ENST00000406938	human	ensembl	69_37n	-1	known	missense	c.701	p.S234L	0.995	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288	75	0	0	69	14	16.67	-	-	-	A	51018822	G	A	51018822	3	1	275	1	0	0	0	0	1	0	0	0	3377	1059	37	1	510	1	CHKB	22	51018822	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	347050	51018822	285744	4956	30643										
PLCXD1	0	genome.wustl.edu	37	chrX	209789	209789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctccttgcgccggcaccacGagctgtggccaggagtcccc	13	17	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	209789	209789	G	A	SNP	PLCXD1	ENST00000381657	human	ensembl	69_37n	1	known	missense	c.637	p.E213K	0.994	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378	54	0	0	30	7	18.92	-	-	-	A	209789	G	A	209789	3	1	275	1	0	0	0	0	1	0	0	0	12115	1059	37	1	655	1	PLCXD1	23	209789	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09		209789	155060771	4957	30644										
PPP2R3B	0	genome.wustl.edu	37	chrX	308342	308342	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactttctccacatggcgacGaacttgtggacggacacgga	11	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	308342	308342	G	A	SNP	PPP2R3B	ENST00000390665	human	ensembl	69_37n	-1	known	silent	c.597	p.F199	0.996	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3B	HGNC	ENSG00000167393	73	0	0	34	12	25.53	-	-	-	A	308342	G	A	308342	2	1	275	1	0	0	0	0	0	0	0	1	12466	1049	37	1		1	PPP2R3B	23	308342	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	98553	308342	154962218	4958	30645										
IL3RA	0	genome.wustl.edu	37	chrX	1471272	1471272	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgctcagggaacacgtatCgggtgtcgtttcgatgacat	13	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	1471272	1471272	C	T	SNP	IL3RA	ENST00000331035	human	ensembl	69_37n	1	known	silent	c.489	p.I163	0.000	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291	85	0	0	65	9	12.16	-	-	-	T	1471272	C	T	1471272	2	4	275	1	0	0	0	0	0	0	0	1	7749	874	31	1		1	IL3RA	23	1471272	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1162930	1471272	153799288	4959	30646										
IL3RA	0	genome.wustl.edu	37	chrX	1475214	1475214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatcgcaaatttcgctatgaGcttcagatacaaaaggtaaa	7	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	1475214	1475214	G	A	SNP	IL3RA	ENST00000331035	human	ensembl	69_37n	1	known	silent	c.717	p.E239	0.001	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291	45	0	0	43	12	21.43	-	-	-	A	1475214	G	A	1475214	2	1	275	1	0	0	0	0	0	0	0	1	7749	962	34	4		4	IL3RA	23	1475214	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3942	1475214	153795346	4960	30647										
MXRA5	0	genome.wustl.edu	37	chrX	3228184	3228184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cattgtccagaagagaaacgCgtcccagggtttgggggccc	14	11	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3228184	3228184	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.8060	p.R2687H	0.974	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	45	0	0	18	6	24	-	-	-	T	3228184	C	T	3228184	3	4	275	1	0	0	0	0	1	0	0	0	10075	768	27	1	430	1	MXRA5	23	3228184	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1752970	3228184	152042376	4961	30648										
MXRA5	0	genome.wustl.edu	37	chrX	3229372	3229372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcgtccaccgctgtcatccGactgcatgaaggagttcacc	10	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3229372	3229372	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.6872	p.S2291L	0.223	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	76	0	0	45	21	31.82	-	-	-	A	3229372	G	A	3229372	3	1	275	1	0	0	0	0	1	0	0	0	10075	1059	37	1	1618	1	MXRA5	23	3229372	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1188	3229372	152041188	4962	30649										
MXRA5	0	genome.wustl.edu	37	chrX	3241252	3241252	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggagatgctgaggggggaGaaatagcaggaaaaggtggt	19	3	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3241252	3241252	G	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.2474	p.S825Y	0.002	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	497	0	0	421	68	13.85	-	-	-	T	3241252	G	T	3241252	3	4	275	1	0	0	0	0	1	0	0	0	10075	942	33	2	6024	2	MXRA5	23	3241252	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11880	3241252	152029308	4963	30650										
MXRA5	0	genome.wustl.edu	37	chrX	3241426	3241426	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatgtttatccttcgtctaGattcaaacactctgcgacct	5	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3241426	3241426	G	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.2300	p.S767Y	0.974	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	250	0	0	243	29	10.66	-	-	-	T	3241426	G	T	3241426	3	4	275	1	0	0	0	0	1	0	0	0	10075	942	33	2	6198	2	MXRA5	23	3241426	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	174	3241426	152029134	4964	30651										
MXRA5	0	genome.wustl.edu	37	chrX	3248193	3248193	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagagttctaaccatgttcTctgctaagtagaggtgcctt	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3248193	3248193	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.575	p.E192G	0.973	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	301	1	0.33	243	40	14.13	-	-	-	C	3248193	T	C	3248193	3	2	275	1	0	0	0	0	1	0	0	0	10075	1551	54	5	7927	5	MXRA5	23	3248193	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6767	3248193	152022367	4965	30652										
PRKX	0	genome.wustl.edu	37	chrX	3544506	3544506	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaatctattttgcctgcaaGaattttctgataaatgccaa	6	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	3544506	3544506	G	T	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.769	p.L257I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	255	0	0	277	45	13.98	-	-	-	T	3544506	G	T	3544506	3	4	275	1	0	0	0	0	1	0	0	0	12608	942	33	2	323	2	PRKX	23	3544506	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	296313	3544506	151726054	4966	30653										
NLGN4X	0	genome.wustl.edu	37	chrX	5950735	5950735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaaaaaacaaaaaataccttCgtcttcaccacggtcattac	4	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	5950735	5950735	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.529	p.E177K	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	67	0	0	88	48	35.29	-	-	-	T	5950735	C	T	5950735	3	4	275	1	0	0	0	0	1	0	0	0	10536	899	31	1		1	NLGN4X	23	5950735	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2406229	5950735	149319825	4967	30654										
KAL1	0	genome.wustl.edu	37	chrX	8565079	8565079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagtgctgccccttacctttGtacagagtcttgggtacttg	10	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	8565079	8565079	G	A	SNP	KAL1	ENST00000262648	human	ensembl	69_37n	-1	known	silent	c.537	p.Y179	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_4-disulphide_core	-	no_errors	KAL1	HGNC	ENSG00000011201	130	0	0	67	12	15.19	-	-	-	A	8565079	G	A	8565079	2	1	275	1	0	0	0	0	0	0	0	1	8028	1372	48	4		4	KAL1	23	8565079	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2614344	8565079	146705481	4968	30655										
SHROOM2	0	genome.wustl.edu	37	chrX	9900234	9900234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaagcagatgcccagtgtCgggaaggcagcccaggatca	14	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	9900234	9900234	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2911	p.R971W	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	140	0	0	63	27	29.67	-	-	-	T	9900234	C	T	9900234	3	4	275	1	0	0	0	0	1	0	0	0	14383	875	31	1	2933	1	SHROOM2	23	9900234	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1335155	9900234	145370326	4969	30656										
MID1	0	genome.wustl.edu	37	chrX	10442787	10442787	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggatgcagttgccatggaGactctgtaatgcaaacaaaa	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	10442787	10442787	G	A	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	silent	c.1017	p.V339	0.991	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	239	0	0	127	59	31.72	-	-	-	A	10442787	G	A	10442787	2	1	275	1	0	0	0	0	0	0	0	1	9647	929	33	2		2	MID1	23	10442787	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	542553	10442787	144827773	4970	30657										
FRMPD4	0	genome.wustl.edu	37	chrX	12734821	12734821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagaaaacactgatgacgCggaggacgaggacgaggtga	16	7	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	12734821	12734821	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.2243	p.A748V	0.784	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	234	0	0	145	59	28.92	-	-	-	T	12734821	C	T	12734821	3	4	275	1	0	0	0	0	1	0	0	0	6108	768	27	1	2301	1	FRMPD4	23	12734821	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2292034	12734821	142535739	4971	30658										
TLR7	0	genome.wustl.edu	37	chrX	12904837	12904837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatcttgaagttcttgatCttggcactaactttataaaa	5	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	12904837	12904837	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.1210	p.L404F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	123	0	0	62	21	25.3	-	-	-	T	12904837	C	T	12904837	3	4	275	1	0	0	0	0	1	0	0	0	16051	913	32	2	1216	2	TLR7	23	12904837	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	170016	12904837	142365723	4972	30659										
TLR8	0	genome.wustl.edu	37	chrX	12937808	12937808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaattctctttcacacgtgCcacccaaactgccaagctcc	4	17	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	12937808	12937808	C	T	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.649	p.P217S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	76	0	0	46	22	32.35	-	-	-	T	12937808	C	T	12937808	3	4	275	1	0	0	0	0	1	0	0	0	16052	739	26	4	655	4	TLR8	23	12937808	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	32971	12937808	142332752	4973	30660										
TCEANC	0	genome.wustl.edu	37	chrX	13680987	13680987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acactgggcatctgcagctcGaattctctgtcttcccaaga	8	13	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	13680987	13680987	G	A	SNP	TCEANC	ENST00000467590	human	ensembl	69_37n	1	known	missense	c.125	p.R42Q	0.000	pirsf_TF_IIS-rel	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCEANC	HGNC	ENSG00000176896	79	0	0	62	18	22.5	-	-	-	A	13680987	G	A	13680987	3	1	275	1	0	0	0	0	1	0	0	0	15773	1045	37	1	456	1	TCEANC	23	13680987	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	743179	13680987	141589573	4974	30661										
TRAPPC2	0	genome.wustl.edu	37	chrX	13732585	13732585	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctgtcaaatgcacttgatcGaataggagaattgggttcat	10	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	13732585	13732585	G	A	SNP	TRAPPC2	ENST00000453655	human	ensembl	69_37n	-1	known	nonsense	c.385	p.R129*	1.000	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2	HGNC	ENSG00000196459	161	0	0	62	22	25.88	-	-	-	A	13732585	G	A	13732585	4	1	275	1	0	0	0	0	0	1	0	0	16554	1066	37	1	62	1	TRAPPC2	23	13732585	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	51598	13732585	141537975	4975	30662										
FANCB	0	genome.wustl.edu	37	chrX	14862651	14862651	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagattattaaaatcccttcGaatggtgttctctgtttcca	6	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	14862651	14862651	G	A	SNP	FANCB	ENST00000324138	human	ensembl	69_37n	-1	known	silent	c.2139	p.F713	0.998	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544	65	0	0	35	9	20.45	-	-	-	A	14862651	G	A	14862651	2	1	275	1	0	0	0	0	0	0	0	1	5709	1049	37	1		1	FANCB	23	14862651	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1130066	14862651	140407909	4976	30663										
ASB9	0	genome.wustl.edu	37	chrX	15270445	15270445	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgctggctccgtgctgcaGaagcaaattcacacaatccc	8	14	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	15270445	15270445	G	T	SNP	ASB9	ENST00000380488	human	ensembl	69_37n	-1	known	missense	c.364	p.L122M	0.375	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB9	HGNC	ENSG00000102048	118	1	0.84	89	11	11	-	-	-	T	15270445	G	T	15270445	3	4	275	1	0	0	0	0	1	0	0	0	1034	933	33	2	565	2	ASB9	23	15270445	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	407794	15270445	140000115	4977	30664										
PIGA	0	genome.wustl.edu	37	chrX	15349471	15349471	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcaggattcagtgctgctctTagtacagtattttccttact	7	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	15349471	15349471	T	G	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	silent	c.582	p.L194	0.989	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	164	0	0	96	22	18.64	-	-	-	G	15349471	T	G	15349471	2	3	275	1	0	0	0	0	0	0	0	1	11958	1741	61	5		5	PIGA	23	15349471	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	79026	15349471	139921089	4978	30665										
PIGA	0	genome.wustl.edu	37	chrX	15349848	15349848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccataagcatgggtgacaaTtataaccttatgccctcttt	6	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	15349848	15349848	T	G	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.205	p.I69L	0.992	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	154	0	0	99	17	14.66	-	-	-	G	15349848	T	G	15349848	3	3	275	1	0	0	0	0	1	0	0	0	11958	1493	52	5	1269	5	PIGA	23	15349848	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	377	15349848	139920712	4979	30666										
FIGF	0	genome.wustl.edu	37	chrX	15376294	15376294	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctctagggctgcactgagttCtttgccattcttcatctata	7	11	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	15376294	15376294	C	A	SNP	FIGF	ENST00000297904	human	ensembl	69_37n	-1	known	missense	c.323	p.R108I	0.939	pfscan_PD_growth_factor	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	FIGF	HGNC	ENSG00000165197	308	0	0	187	66	26.09	-	-	-	A	15376294	C	A	15376294	3	1	275	1	0	0	0	0	1	0	0	0	5935	913	32	2	761	2	FIGF	23	15376294	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	26446	15376294	139894266	4980	30667										
TXLNG	0	genome.wustl.edu	37	chrX	16838292	16838292	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgttaaccatcaggaaaaGaagttttattactgatgcaa	7	6	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	16838292	16838292	G	T	SNP	TXLNG	ENST00000380122	human	ensembl	69_37n	1	known	nonsense	c.412	p.E138*	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNG	HGNC	ENSG00000086712	185	0	0	122	42	25.61	-	-	-	T	16838292	G	T	16838292	4	4	275	1	0	0	0	0	0	1	0	0	16886	943	33	2	422	2	TXLNG	23	16838292	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1461998	16838292	138432268	4981	30668										
RBBP7	0	genome.wustl.edu	37	chrX	16863181	16863181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatccttgtccctccagttCggatgtcgtgacatctgact	9	12	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	16863181	16863181	C	T	SNP	RBBP7	ENST00000380087	human	ensembl	69_37n	-1	known	missense	c.1255	p.E419K	1.000	NULL	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP7	HGNC	ENSG00000102054	453	0	0	270	44	14.01	-	-	-	T	16863181	C	T	16863181	3	4	275	1	0	0	0	0	1	0	0	0	13187	893	31	1	26	1	RBBP7	23	16863181	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	24889	16863181	138407379	4982	30669										
RBBP7	0	genome.wustl.edu	37	chrX	16887272	16887272	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcataaccaggtcatataGaaacggtgtattcttcttcc	8	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	16887272	16887272	G	T	SNP	RBBP7	ENST00000380087	human	ensembl	69_37n	-1	known	missense	c.88	p.L30I	1.000	pfam_Histone-bd_RBBP4	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP7	HGNC	ENSG00000102054	165	0	0	86	14	14	-	-	-	T	16887272	G	T	16887272	3	4	275	1	0	0	0	0	1	0	0	0	13187	933	33	2	1233	2	RBBP7	23	16887272	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	24091	16887272	138383288	4983	30670										
NHS	0	genome.wustl.edu	37	chrX	17739707	17739707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccagaggagaagatgaaacaAgatgcccaagtgatttcttc	10	8	1	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	17739707	17739707	A	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.999	p.Q333H	0.999	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	1354	0	0	882	132	13.02	-	-	-	C	17739707	A	C	17739707	3	2	275	1	0	0	0	0	1	0	0	0	10483	69	3	5	1118	5	NHS	23	17739707	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	852435	17739707	137530853	4984	30671										
SCML1	0	genome.wustl.edu	37	chrX	17768339	17768339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggttcttcttcagggctctGccttggcaaccctcgggctg	12	13	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	17768339	17768339	G	T	SNP	SCML1	ENST00000380041	human	ensembl	69_37n	1	known	missense	c.629	p.C210F	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634	132	0	0	67	14	16.87	-	-	-	T	17768339	G	T	17768339	3	4	275	1	0	0	0	0	1	0	0	0	13997	1319	46	4	650	4	SCML1	23	17768339	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28632	17768339	137502221	4985	30672										
BEND2	0	genome.wustl.edu	37	chrX	18194144	18194144	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agatcatagaattgataccaGaaatacagtcctgccagtct	7	9	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	18194144	18194144	G	T	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	missense	c.1700	p.S567Y	0.001	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	238	0	0	161	27	14.21	-	-	-	T	18194144	G	T	18194144	3	4	275	1	0	0	0	0	1	0	0	0	1402	942	33	2	741	2	BEND2	23	18194144	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	425805	18194144	137076416	4986	30673										
SCML2	0	genome.wustl.edu	37	chrX	18264849	18264849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acataggatttctacaggcaGgattcaaataatttcctgaa	7	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	18264849	18264849	G	A	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.1670	p.P557L	0.031	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	169	0	0	148	17	10.24	-	-	-	A	18264849	G	A	18264849	3	1	275	1	0	0	0	0	1	0	0	0	13998	1000	35	4	444	4	SCML2	23	18264849	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	70705	18264849	137005711	4987	30674										
CDKL5	0	genome.wustl.edu	37	chrX	18602449	18602449	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtacgttgccaccagatggtAtcggtccccagaactcttac	9	13	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	18602449	18602449	A	G	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.530	p.Y177C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	462	0	0	216	31	12.5	-	-	-	G	18602449	A	G	18602449	3	3	275	1	0	0	0	0	1	0	0	0	3186	449	16	5	556	5	CDKL5	23	18602449	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	337600	18602449	136668111	4988	30675										
PHKA2	0	genome.wustl.edu	37	chrX	18970660	18970660	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgcatcagcttcaccacgttCtgtggagataaagcagaatc	9	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	18970660	18970660	C	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	splice_site	c.238-1	e3-1	1.000	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	193	0	0	138	29	17.37	-	-	-	A	18970660	C	A	18970660	5	1	275	1	0	0	0	0	0	0	1	0	11918	927	32	2	3594	2	PHKA2	23	18970660	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	368211	18970660	136299900	4989	30676										
GPR64	0	genome.wustl.edu	37	chrX	19017178	19017178	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaactggtccccaggcaaaGaaggcaaagccccaagttat	9	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	19017178	19017178	G	T	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.2550	p.F850L	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	125	0	0	132	17	11.41	-	-	-	T	19017178	G	T	19017178	3	4	275	1	0	0	0	0	1	0	0	0	6755	933	33	2	519	2	GPR64	23	19017178	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	46518	19017178	136253382	4990	30677										
GPR64	0	genome.wustl.edu	37	chrX	19021229	19021229	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagggtaatccctccggatCtttctaaaaggaaaggatga	11	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	19021229	19021229	C	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.1965	p.K655N	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	208	0	0	223	33	12.89	-	-	-	A	19021229	C	A	19021229	3	1	275	1	0	0	0	0	1	0	0	0	6755	912	32	2	1112	2	GPR64	23	19021229	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4051	19021229	136249331	4991	30678										
MAP3K15	0	genome.wustl.edu	37	chrX	19478236	19478236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtatttctctctggctttcCggatgtcatttaacaaggtt	9	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	19478236	19478236	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.755	p.R252Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	238	0	0	205	24	10.48	-	-	-	T	19478236	C	T	19478236	3	4	275	1	0	0	0	0	1	0	0	0	9320	652	23	1	3286	1	MAP3K15	23	19478236	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	457007	19478236	135792324	4992	30679										
CXorf23	0	genome.wustl.edu	37	chrX	19973551	19973551	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgatttcctgagcaaattCtcctgtaggtttgttttcag	8	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	19973551	19973551	C	A	SNP	CXorf23	ENST00000379687	human	ensembl	69_37n	-1	known	nonsense	c.1408	p.E470*	1.000	NULL	NULL	-	no_errors	CXorf23	HGNC	ENSG00000173681	612	1	0.16	339	98	22.43	-	-	-	A	19973551	C	A	19973551	4	1	275	1	0	0	0	0	0	1	0	0	4134	922	32	2	672	2	CXorf23	23	19973551	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	495315	19973551	135297009	4993	30680										
CXorf23	0	genome.wustl.edu	37	chrX	19984268	19984268	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgactgggagtatttttcttCttgtatcctctggtgcctca	9	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	19984268	19984268	C	A	SNP	CXorf23	ENST00000379687	human	ensembl	69_37n	-1	known	nonsense	c.541	p.E181*	1.000	NULL	NULL	-	no_errors	CXorf23	HGNC	ENSG00000173681	477	0	0	288	128	30.77	-	-	-	A	19984268	C	A	19984268	4	1	275	1	0	0	0	0	0	1	0	0	4134	922	32	2	1547	2	CXorf23	23	19984268	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10717	19984268	135286292	4994	30681										
RPS6KA3	0	genome.wustl.edu	37	chrX	20174289	20174289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcagttggtcccagtggaCgatccaaggatgtctgagca	14	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	20174289	20174289	C	T	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	missense	c.2038	p.V680I	0.997	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	539	0	0	411	101	19.69	-	-	-	T	20174289	C	T	20174289	3	4	275	1	0	0	0	0	1	0	0	0	13738	536	19	1	192	1	RPS6KA3	23	20174289	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	190021	20174289	135096271	4995	30682										
RPS6KA3	0	genome.wustl.edu	37	chrX	20183109	20183109	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagccaaaatcacaaattcGaatagattccggattaccag	6	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	20183109	20183109	G	A	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	nonsense	c.1672	p.R558*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	185	0	0	150	65	30.23	-	-	-	A	20183109	G	A	20183109	4	1	275	1	0	0	0	0	0	1	0	0	13738	1066	37	1	570	1	RPS6KA3	23	20183109	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	8820	20183109	135087451	4996	30683										
RPS6KA3	0	genome.wustl.edu	37	chrX	20213249	20213249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcacgttccatttttgtccGaactcggtctcgaactataa	6	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	20213249	20213249	G	A	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	missense	c.340	p.R114W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	364	3	0.82	275	56	16.87	-	-	-	A	20213249	G	A	20213249	3	1	275	1	0	0	0	0	1	0	0	0	13738	1057	37	1	1954	1	RPS6KA3	23	20213249	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	30140	20213249	135057311	4997	30684										
PHEX	0	genome.wustl.edu	37	chrX	22094544	22094544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagtagaaggcgggacaccGaagccatacagaaagccaaa	11	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	22094544	22094544	G	A	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	missense	c.388	p.E130K	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	647	1	0.15	454	83	15.43	-	-	-	A	22094544	G	A	22094544	3	1	275	1	0	0	0	0	1	0	0	0	11893	1059	37	1	402	1	PHEX	23	22094544	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1881295	22094544	133176016	4998	30685										
DDX53	0	genome.wustl.edu	37	chrX	23019818	23019818	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgatttcccaaggaatatTgacgtatatgtacacagagt	8	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	23019818	23019818	T	A	SNP	DDX53	ENST00000327968	human	ensembl	69_37n	1	known	silent	c.1644	p.I548	0.655	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735	177	0	0	128	22	14.67	-	-	-	A	23019818	T	A	23019818	2	1	275	1	0	0	0	0	0	0	0	1	4402	1800	63	5		5	DDX53	23	23019818	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	925274	23019818	132250742	4999	30686										
PCYT1B	0	genome.wustl.edu	37	chrX	24608144	24608144	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggagaatgagaagtaccttgTgtttttccagaaactctggc	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	24608144	24608144	T	C	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.482	p.H161R	1.000	pfam_Cytidylyltransf	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	407	0	0	321	68	17.35	-	-	-	C	24608144	T	C	24608144	3	2	275	1	0	0	0	0	1	0	0	0	11684	1696	59	5	684	5	PCYT1B	23	24608144	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1588326	24608144	130662416	5000	30687										
POLA1	0	genome.wustl.edu	37	chrX	24746048	24746048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaatgcaaagaaccatcaaAatgaggtttaaaaaatagga	8	4	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	24746048	24746048	A	C	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.1681	p.N561H	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	301	1	0.33	222	58	20.71	-	-	-	C	24746048	A	C	24746048	3	2	275	1	0	0	0	0	1	0	0	0	12261	14	1	5	1721	5	POLA1	23	24746048	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	137904	24746048	130524512	5001	30688										
POLA1	0	genome.wustl.edu	37	chrX	24759535	24759535	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttggaacacacctggaaaGatgccaagttcattttgcag	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	24759535	24759535	G	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.2260	p.D754Y	1.000	superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	360	0	0	201	90	30.93	-	-	-	T	24759535	G	T	24759535	3	4	275	1	0	0	0	0	1	0	0	0	12261	942	33	2	2324	2	POLA1	23	24759535	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	13487	24759535	130511025	5002	30689										
POLA1	0	genome.wustl.edu	37	chrX	24761362	24761362	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attagggagatgaagatgaaGaaattgatggagataccaat	12	2	0	7			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	24761362	24761362	G	A	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.2482	p.E828K	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	290	0	0	146	56	27.72	-	-	-	A	24761362	G	A	24761362	3	1	275	1	0	0	0	0	1	0	0	0	12261	943	33	2	2554	2	POLA1	23	24761362	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1827	24761362	130509198	5003	30690										
POLA1	0	genome.wustl.edu	37	chrX	25013998	25013998	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaacacagcagagcaattCttgtcccgaagtggctactc	9	11	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	25013998	25013998	C	A	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.4338	p.F1446L	0.982	pfam_Znf_DNA-dir_DNA_pol_B_alpha	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	332	0	0	192	76	28.36	-	-	-	A	25013998	C	A	25013998	3	1	275	1	0	0	0	0	1	0	0	0	12261	912	32	2	4466	2	POLA1	23	25013998	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	252636	25013998	130256562	5004	30691										
MAGEB6	0	genome.wustl.edu	37	chrX	26212640	26212640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agacatgctgaagtgtgtccGcagagagtacaagccctact	11	10	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	26212640	26212640	G	A	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.677	p.R226H	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	78	0	0	56	13	18.57	-	-	-	A	26212640	G	A	26212640	3	1	275	1	0	0	0	0	1	0	0	0	9250	1087	38	1	679	1	MAGEB6	23	26212640	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1198642	26212640	129057920	5005	30692										
MAGEB6	0	genome.wustl.edu	37	chrX	26212723	26212723	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttggcgttgaattgaaaGaaatggattccagcggcgag	13	7	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	26212723	26212723	G	T	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	nonsense	c.760	p.E254*	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	119	0	0	66	10	13.16	-	-	-	T	26212723	G	T	26212723	4	4	275	1	0	0	0	0	0	1	0	0	9250	943	33	2	762	2	MAGEB6	23	26212723	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	83	26212723	129057837	5006	30693										
MAGEB10	0	genome.wustl.edu	37	chrX	27840083	27840083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatggcaattgtgtcgctgaGgaggaagtctggaaagtgtt	15	4	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	27840083	27840083	G	T	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	missense	c.660	p.E220D	0.005	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	74	0	0	75	9	10.71	-	-	-	T	27840083	G	T	27840083	3	4	275	1	0	0	0	0	1	0	0	0	9244	991	35	4	662	4	MAGEB10	23	27840083	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1627360	27840083	127430477	5007	30694										
DCAF8L1	0	genome.wustl.edu	37	chrX	27999139	27999139	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccttcctcctccatctcttCttcttcctcctccctttctg	1	21	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	27999139	27999139	C	A	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	nonsense	c.313	p.E105*	0.974	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	309	0	0	180	53	22.75	-	-	-	A	27999139	C	A	27999139	4	1	275	1	0	0	0	0	0	1	0	0	4309	922	32	2	1493	2	DCAF8L1	23	27999139	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	159056	27999139	127271421	5008	30695										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29301120	29301120	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttttggtgggagagcctgttCgaatcaaatgtgcactcttt	11	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	29301120	29301120	C	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	nonsense	c.148	p.R50*	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	476	0	0	286	110	27.78	-	-	-	T	29301120	C	T	29301120	4	4	275	1	0	0	0	0	0	1	0	0	7715	876	31	1	154	1	IL1RAPL1	23	29301120	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1301981	29301120	125969440	5009	30696										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29686611	29686611	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtaaactgacaattcaggaGacccagctgggtgagtaatt	11	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	29686611	29686611	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	silent	c.768	p.E256	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	537	1	0.19	302	82	21.35	-	-	-	A	29686611	G	A	29686611	2	1	275	1	0	0	0	0	0	0	0	1	7715	933	33	2		2	IL1RAPL1	23	29686611	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	385491	29686611	125583949	5010	30697										
MAGEB3	0	genome.wustl.edu	37	chrX	30254733	30254733	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaattcctgaataagatgaGaatatatgatgggaagaaac	11	3	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30254733	30254733	G	T	SNP	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	missense	c.692	p.R231I	0.003	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	103	0	0	83	27	24.55	-	-	-	T	30254733	G	T	30254733	3	4	275	1	0	0	0	0	1	0	0	0	9248	942	33	2	694	2	MAGEB3	23	30254733	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	568122	30254733	125015827	5011	30698										
MAGEB4	0	genome.wustl.edu	37	chrX	30261063	30261063	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcccccacgctatcaattcCtgtggggtccaagagctcat	8	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30261063	30261063	C	A	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.811	p.L271M	0.701	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	157	0	0	120	25	17.24	-	-	-	A	30261063	C	A	30261063	3	1	275	1	0	0	0	0	1	0	0	0	9249	680	24	4	813	4	MAGEB4	23	30261063	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6330	30261063	125009497	5012	30699										
GK	0	genome.wustl.edu	37	chrX	30671719	30671719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtggaccagggcaccagttCgacgcgctttttggtgagcc	15	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30671719	30671719	C	T	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	missense	c.65	p.S22L	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	165	0	0	52	25	31.65	-	-	-	T	30671719	C	T	30671719	3	4	275	1	0	0	0	0	1	0	0	0	6472	893	31	1	67	1	GK	23	30671719	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	410656	30671719	124598841	5013	30700										
GK	0	genome.wustl.edu	37	chrX	30686136	30686136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttttgttcaaagatgggtgGaacaggaccctaaggaaatt	11	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30686136	30686136	G	A	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	missense	c.160	p.E54K	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	169	0	0	118	47	28.48	-	-	-	A	30686136	G	A	30686136	3	1	275	1	0	0	0	0	1	0	0	0	6472	1175	41	2	170	2	GK	23	30686136	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14417	30686136	124584424	5014	30701										
GK	0	genome.wustl.edu	37	chrX	30686235	30686235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgatatttccaacataaaaGgtattttagtagaatatttt	5	3	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30686235	30686235	G	T	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	missense	c.259	p.A87S	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	136	0	0	131	21	13.82	-	-	-	T	30686235	G	T	30686235	3	4	275	1	0	0	0	0	1	0	0	0	6472	1014	35	4	269	4	GK	23	30686235	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	99	30686235	124584325	5015	30702										
GK	0	genome.wustl.edu	37	chrX	30737550	30737550	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgttagaaaaacttgctaaaGaagtaggtacttcttatggc	9	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30737550	30737550	G	T	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	nonsense	c.1051	p.E351*	1.000	pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	255	0	0	129	43	25	-	-	-	T	30737550	G	T	30737550	4	4	275	1	0	0	0	0	0	1	0	0	6472	943	33	2	1127	2	GK	23	30737550	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	51315	30737550	124533010	5016	30703										
GK	0	genome.wustl.edu	37	chrX	30738757	30738757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattttggatgccatgaatcGagactgtggaattccactca	10	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	30738757	30738757	G	A	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	missense	c.1238	p.R413Q	0.977	pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	241	0	0	137	66	32.35	-	-	-	A	30738757	G	A	30738757	3	1	275	1	0	0	0	0	1	0	0	0	6472	1058	37	1	1322	1	GK	23	30738757	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1207	30738757	124531803	5017	30704										
DMD	0	genome.wustl.edu	37	chrX	31224749	31224749	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagggaaatgatgccagttTtaaaagacaggacacggatc	11	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	31224749	31224749	T	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9599	p.K3200T	1.000	pfam_EF-hand_dom_typ1,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	417	0	0	203	85	29.51	-	-	-	G	31224749	T	G	31224749	3	3	275	1	0	0	0	0	1	0	0	0	4616	1841	64	5	1604	5	DMD	23	31224749	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	485992	31224749	124045811	5018	30705										
DMD	0	genome.wustl.edu	37	chrX	31525420	31525420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatgttgagagactttttccGaagttcactccacttgaagt	8	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	31525420	31525420	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.8368	p.R2790W	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	392	0	0	265	95	26.39	-	-	-	A	31525420	G	A	31525420	3	1	275	1	0	0	0	0	1	0	0	0	4616	1057	37	1	2899	1	DMD	23	31525420	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	300671	31525420	123745140	5019	30706										
DMD	0	genome.wustl.edu	37	chrX	31747750	31747750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgttaaaaaacttacttCgatccgtaatgattgttcta	6	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	31747750	31747750	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.7658	p.R2553Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	387	0	0	277	46	14.24	-	-	-	T	31747750	C	T	31747750	3	4	275	1	0	0	0	0	1	0	0	0	4616	884	31	1	3659	1	DMD	23	31747750	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	222330	31747750	123522810	5020	30707										
DMD	0	genome.wustl.edu	37	chrX	32305671	32305671	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggtccttgtacattttgtTaactttttcccattggaaat	6	8	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	32305671	32305671	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.6265	p.N2089D	0.989	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	840	1	0.12	483	160	24.84	-	-	-	C	32305671	T	C	32305671	3	2	275	1	0	0	0	0	1	0	0	0	4616	1754	61	5	5088	5	DMD	23	32305671	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	557921	32305671	122964889	5021	30708										
DMD	0	genome.wustl.edu	37	chrX	32328392	32328392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgtttcttcacggacagtgTgctggtatagatatacaaaa	9	7	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	32328392	32328392	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5924	p.H1975R	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	255	0	0	123	39	23.93	-	-	-	C	32328392	T	C	32328392	3	2	275	1	0	0	0	0	1	0	0	0	4616	1710	59	5	5433	5	DMD	23	32328392	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	22721	32328392	122942168	5022	30709										
DMD	0	genome.wustl.edu	37	chrX	32459312	32459312	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttacatctagcacctcagaGatttcctcagctccgccagg	7	15	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	32459312	32459312	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.3906	p.I1302	0.778	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	210	0	0	133	56	29.63	-	-	-	T	32459312	G	T	32459312	2	4	275	1	0	0	0	0	0	0	0	1	4616	932	33	2		2	DMD	23	32459312	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	130920	32459312	122811248	5023	30710										
FAM47B	0	genome.wustl.edu	37	chrX	34961468	34961468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggcccgggagaagacaaccGaggtacccaccgagtctggt	14	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	34961468	34961468	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	0.007	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	107	0	0	61	13	17.33	-	-	-	A	34961468	G	A	34961468	3	1	275	1	0	0	0	0	1	0	0	0	5616	1059	37	1	522	1	FAM47B	23	34961468	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2502156	34961468	120309092	5024	30711										
MAGEB16	0	genome.wustl.edu	37	chrX	35821046	35821046	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaagcacttcatctttggaGagcccagaatgctcatcacc	8	12	4	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	35821046	35821046	G	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	missense	c.829	p.E277K	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	169	0	0	104	46	30.67	-	-	-	A	35821046	G	A	35821046	3	1	275	1	0	0	0	0	1	0	0	0	9245	943	33	2	735	2	MAGEB16	23	35821046	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	859578	35821046	119449514	5025	30712										
XK	0	genome.wustl.edu	37	chrX	37587124	37587124	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcatcaacttcttcagtttCttcttgtacccctggatcct	4	14	6	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	37587124	37587124	C	A	SNP	XK	ENST00000378616	human	ensembl	69_37n	1	known	missense	c.744	p.F248L	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597	808	0	0	422	152	26.48	-	-	-	A	37587124	C	A	37587124	3	1	275	1	0	0	0	0	1	0	0	0	17528	912	32	2	754	2	XK	23	37587124	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1766078	37587124	117683436	5026	30713										
XK	0	genome.wustl.edu	37	chrX	37587605	37587605	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaaccctgtgagccgataGgaaaggaagatctacagtca	10	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	37587605	37587605	G	T	SNP	XK	ENST00000378616	human	ensembl	69_37n	1	known	nonsense	c.1225	p.G409*	0.086	NULL	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597	292	0	0	181	21	10.4	-	-	-	T	37587605	G	T	37587605	4	4	275	1	0	0	0	0	0	1	0	0	17528	1001	35	4	1235	4	XK	23	37587605	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	481	37587605	117682955	5027	30714										
SYTL5	0	genome.wustl.edu	37	chrX	37981418	37981418	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgttcatcaaagaggcaaaGaatttgacagcagtgaagtc	11	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	37981418	37981418	G	T	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	missense	c.1857	p.K619N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	376	0	0	243	31	11.31	-	-	-	T	37981418	G	T	37981418	3	4	275	1	0	0	0	0	1	0	0	0	15578	933	33	2	1915	2	SYTL5	23	37981418	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	393813	37981418	117289142	5028	30715										
RPGR	0	genome.wustl.edu	37	chrX	38158323	38158323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagtatcatttatttcatcGaattcaatttcttttgccac	3	9	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	38158323	38158323	G	A	SNP	RPGR	ENST00000464437	human	ensembl	69_37n	-1	putative	missense	c.197	p.S66L	0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPGR	HGNC	ENSG00000156313	163	0	0	150	20	11.7	-	-	-	A	38158323	G	A	38158323	3	1	275	1	0	0	0	0	1	0	0	0	13634	1049	37	1	2910	1	RPGR	23	38158323	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	176905	38158323	117112237	5029	30716										
OTC	0	genome.wustl.edu	37	chrX	38240606	38240606	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttattgtaggctttgcacttCtgggaggacatccttgtttt	10	7	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	38240606	38240606	C	A	SNP	OTC	ENST00000039007	human	ensembl	69_37n	1	known	missense	c.310	p.L104M	1.000	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Asp/Orn_carbamoylTrfase,tigrfam_Orn/put_carbamltrans	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473	307	0	0	197	26	11.66	-	-	-	A	38240606	C	A	38240606	3	1	275	1	0	0	0	0	1	0	0	0	11374	912	32	2	324	2	OTC	23	38240606	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	82283	38240606	117029954	5030	30717										
BCOR	0	genome.wustl.edu	37	chrX	39911452	39911452	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atttcgttcgtgaattccacCagatctaacagctccttact	5	12	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	39911452	39911452	C	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	silent	c.5178	p.L1726	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	123	0	0	103	21	16.8	-	-	-	A	39911452	C	A	39911452	2	1	275	1	0	0	0	0	0	0	0	1	1390	581	21	4		4	BCOR	23	39911452	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1670846	39911452	115359108	5031	30718										
BCOR	0	genome.wustl.edu	37	chrX	39934252	39934252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatctctggatttctttccGaagaaaacccaaggccacct	7	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	39934252	39934252	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.347	p.S116L	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	97	0	0	84	13	13.27	-	-	-	A	39934252	G	A	39934252	3	1	275	1	0	0	0	0	1	0	0	0	1390	1059	37	1	4968	1	BCOR	23	39934252	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22800	39934252	115336308	5032	30719										
ATP6AP2	0	genome.wustl.edu	37	chrX	40456897	40456897	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagttcactccccctcaattCtctgagtaggaacaatgaag	7	12	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	40456897	40456897	C	A	SNP	ATP6AP2	ENST00000378438	human	ensembl	69_37n	1	known	missense	c.515	p.S172Y	1.000	NULL	pfam_Renin_rcpt	-	no_errors	ATP6AP2	HGNC	ENSG00000182220	146	0	0	112	19	14.5	-	-	-	A	40456897	C	A	40456897	3	1	275	1	0	0	0	0	1	0	0	0	1171	913	32	2	533	2	ATP6AP2	23	40456897	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	522645	40456897	114813663	5033	30720										
MED14	0	genome.wustl.edu	37	chrX	40562738	40562738	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacattccagaatgtaaatCtacaaaaatgtgcagacact	5	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	40562738	40562738	C	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.1369	p.D457Y	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	175	0	0	87	32	26.89	-	-	-	A	40562738	C	A	40562738	3	1	275	1	0	0	0	0	1	0	0	0	9503	913	32	2	3079	2	MED14	23	40562738	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	105841	40562738	114707822	5034	30721										
MED14	0	genome.wustl.edu	37	chrX	40570494	40570494	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggtctccccaccgttctcGgattaacattagagtttggg	10	10	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	40570494	40570494	G	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	nonsense	c.949	p.R317*	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	345	0	0	264	36	12	-	-	-	A	40570494	G	A	40570494	4	1	275	1	0	0	0	0	0	1	0	0	9503	1124	39	1	3511	1	MED14	23	40570494	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7756	40570494	114700066	5035	30722										
MED14	0	genome.wustl.edu	37	chrX	40586058	40586058	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actaaagctaataatcgaacGaagagttggcgtgtccggct	11	8	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	40586058	40586058	G	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	silent	c.288	p.F96	1.000	pfam_Mediator_Med14	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	228	2	0.87	133	52	28.11	-	-	-	A	40586058	G	A	40586058	2	1	275	1	0	0	0	0	0	0	0	1	9503	1049	37	1		1	MED14	23	40586058	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	15564	40586058	114684502	5036	30723										
USP9X	0	genome.wustl.edu	37	chrX	41010191	41010191	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggaccgtgatacacaaaaGatccaatggatagatcgctt	9	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	41010191	41010191	G	T	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.1644	p.K548N	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	198	0	0	96	14	12.73	-	-	-	T	41010191	G	T	41010191	3	4	275	1	0	0	0	0	1	0	0	0	17187	933	33	2	1690	2	USP9X	23	41010191	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	424133	41010191	114260369	5037	30724										
DDX3X	0	genome.wustl.edu	37	chrX	41203505	41203505	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttatagttttcataccgatCtagagttcgtccttgcgtgg	9	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	41203505	41203505	C	A	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.878	p.S293Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	571	0	0	395	68	14.69	-	-	-	A	41203505	C	A	41203505	3	1	275	1	0	0	0	0	1	0	0	0	4389	913	32	2	916	2	DDX3X	23	41203505	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	193314	41203505	114067055	5038	30725										
GPR34	0	genome.wustl.edu	37	chrX	41555230	41555230	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccgaataatgtatcataTtaaccaaaacaagtggacac	5	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	41555230	41555230	T	C	SNP	GPR34	ENST00000378138	human	ensembl	69_37n	1	known	missense	c.344	p.I115T	0.023	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR34	HGNC	ENSG00000171659	122	0	0	116	19	14.07	-	-	-	C	41555230	T	C	41555230	3	2	275	1	0	0	0	0	1	0	0	0	6739	1493	52	5	346	5	GPR34	23	41555230	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	351725	41555230	113715330	5039	30726										
MAOB	0	genome.wustl.edu	37	chrX	43640731	43640731	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agttgccttcaggtttggtaTcatccaacgtgtaggcaact	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	43640731	43640731	T	C	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	missense	c.989	p.D330G	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	230	0	0	202	32	13.62	-	-	-	C	43640731	T	C	43640731	3	2	275	1	0	0	0	0	1	0	0	0	9297	1435	50	5	601	5	MAOB	23	43640731	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	2085501	43640731	111629829	5040	30727										
MAOB	0	genome.wustl.edu	37	chrX	43702919	43702919	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gattcttaatgccttaccctAagagtgtaagtcctgcctcc	7	12	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	43702919	43702919	A	G	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	silent	c.138	p.L46	0.107	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	283	0	0	172	78	31.08	-	-	-	G	43702919	A	G	43702919	2	3	275	1	0	0	0	0	0	0	0	1	9297	349	13	5		5	MAOB	23	43702919	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	62188	43702919	111567641	5041	30728										
FUNDC1	0	genome.wustl.edu	37	chrX	44386527	44386527	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgctgctttgttcgctcGtttcttaatctgtctttttg	9	8	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	44386527	44386527	G	A	SNP	FUNDC1	ENST00000378045	human	ensembl	69_37n	-1	known	nonsense	c.346	p.R116*	1.000	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC1	HGNC	ENSG00000069509	978	0	0	646	88	11.94	-	-	-	A	44386527	G	A	44386527	4	1	275	1	0	0	0	0	0	1	0	0	6146	1153	40	1	129	1	FUNDC1	23	44386527	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	683608	44386527	110884033	5042	30729										
CXorf36	0	genome.wustl.edu	37	chrX	45010806	45010806	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctttcttctcatctttaaaAaagagctgcttctttctacc	3	12	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	45010806	45010806	A	C	SNP	CXorf36	ENST00000477281	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CXorf36	HGNC	ENSG00000147113	72	0	0	56	12	17.65	-	-	-	C	45010806	A	C	45010806	1	2	275	0	1	0	0	0	0	0	0	0	4137	29	1	5		5	CXorf36	23	45010806	RNA	SNP	A	TCGA-AN-A046-01A-21W-A050-09	624279	45010806	110259754	5043	30730										
ZNF674	0	genome.wustl.edu	37	chrX	46359977	46359977	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctcacttgtgtgaattctTtgatatataaggctggacgt	9	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46359977	46359977	T	C	SNP	ZNF674	ENST00000523374	human	ensembl	69_37n	-1	known	silent	c.1047	p.Q349	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	198	0	0	140	30	17.65	-	-	-	C	46359977	T	C	46359977	2	2	275	1	0	0	0	0	0	0	0	1	18177	1838	64	5		5	ZNF674	23	46359977	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	1349171	46359977	108910583	5044	30731										
ZNF674	0	genome.wustl.edu	37	chrX	46360443	46360443	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttgattagggtcaaaaaatCtctctgcaggttgagcttta	10	6	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46360443	46360443	C	A	SNP	ZNF674	ENST00000523374	human	ensembl	69_37n	-1	known	missense	c.581	p.R194I	0.866	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	325	0	0	201	80	28.47	-	-	-	A	46360443	C	A	46360443	3	1	275	1	0	0	0	0	1	0	0	0	18177	913	32	2	1168	2	ZNF674	23	46360443	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	466	46360443	108910117	5045	30732										
ZNF674	0	genome.wustl.edu	37	chrX	46360533	46360533	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttctttcttacatagcttCtattttgaccaagaaagttt	4	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46360533	46360533	C	A	SNP	ZNF674	ENST00000523374	human	ensembl	69_37n	-1	known	missense	c.491	p.R164I	0.962	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192	249	0	0	174	26	13	-	-	-	A	46360533	C	A	46360533	3	1	275	1	0	0	0	0	1	0	0	0	18177	913	32	2	1258	2	ZNF674	23	46360533	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	90	46360533	108910027	5046	30733										
SLC9A7	0	genome.wustl.edu	37	chrX	46466593	46466593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcaatgtcaggtcgccttCggtcaggatgaaatcagagt	13	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46466593	46466593	C	T	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	missense	c.1972	p.E658K	0.998	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	135	0	0	89	29	24.58	-	-	-	T	46466593	C	T	46466593	3	4	275	1	0	0	0	0	1	0	0	0	14808	893	31	1	209	1	SLC9A7	23	46466593	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	106060	46466593	108803967	5047	30734										
PHF16	0	genome.wustl.edu	37	chrX	46887306	46887306	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgtgcaggttgtgggccagTtgatgagaatcttatggaaa	14	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46887306	46887306	T	G	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	missense	c.488	p.V163G	0.998	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	237	1	0.42	185	50	21.28	-	-	-	G	46887306	T	G	46887306	3	3	275	1	0	0	0	0	1	0	0	0	11901	1725	60	5	506	5	PHF16	23	46887306	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	420713	46887306	108383254	5048	30735										
PHF16	0	genome.wustl.edu	37	chrX	46915519	46915519	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatatgataagcagacgagaGaagctgaagctgtcacacaa	10	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	46915519	46915519	G	T	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	missense	c.1479	p.E493D	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	374	0	0	241	39	13.93	-	-	-	T	46915519	G	T	46915519	3	4	275	1	0	0	0	0	1	0	0	0	11901	933	33	2	1513	2	PHF16	23	46915519	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	28213	46915519	108355041	5049	30736										
RBM10	0	genome.wustl.edu	37	chrX	47028799	47028799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaccgcagccgagaccacGactaccgggacatggactac	11	14	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47028799	47028799	G	A	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	missense	c.103	p.D35N	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	454	0	0	252	43	14.58	-	-	-	A	47028799	G	A	47028799	3	1	275	1	0	0	0	0	1	0	0	0	13194	1058	37	1	109	1	RBM10	23	47028799	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	113280	47028799	108241761	5050	30737										
UBA1	0	genome.wustl.edu	37	chrX	47072430	47072430	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatcccagccattgccacGaccacagcagccgtggttgg	10	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47072430	47072430	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.2688	p.T896	0.292	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	93	0	0	67	11	14.1	-	-	-	A	47072430	G	A	47072430	2	1	275	1	0	0	0	0	0	0	0	1	16924	1045	37	1		1	UBA1	23	47072430	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	43631	47072430	108198130	5051	30738										
UBA1	0	genome.wustl.edu	37	chrX	47073738	47073738	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttgcagtactataaccaaGagtggacattgtgggatcgc	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47073738	47073738	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.2851	p.E951K	0.999	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	220	0	0	199	26	11.56	-	-	-	A	47073738	G	A	47073738	3	1	275	1	0	0	0	0	1	0	0	0	16924	943	33	2	2941	2	UBA1	23	47073738	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1308	47073738	108196822	5052	30739										
ZNF41	0	genome.wustl.edu	37	chrX	47307006	47307006	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagctttcccacatttactAcattcatagtgtctttctcc	3	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47307006	47307006	A	G	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	silent	c.2193	p.C731	0.706	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	237	0	0	218	29	11.74	-	-	-	G	47307006	A	G	47307006	2	3	275	1	0	0	0	0	0	0	0	1	17985	389	14	5		5	ZNF41	23	47307006	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	233268	47307006	107963554	5053	30740										
ZNF41	0	genome.wustl.edu	37	chrX	47308780	47308780	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttcttctaaaatagaacatAatgaatcttctcctatgggt	6	7	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47308780	47308780	A	C	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	nonsense	c.419	p.L140*	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	132	0	0	118	14	10.61	-	-	-	C	47308780	A	C	47308780	4	2	275	1	0	0	0	0	0	1	0	0	17985	372	13	5	1954	5	ZNF41	23	47308780	Nonsense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1774	47308780	107961780	5054	30741										
ARAF	0	genome.wustl.edu	37	chrX	47428972	47428972	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggggctcacggtgaagatCggtgactttggcttggccac	16	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47428972	47428972	C	T	SNP	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	silent	c.1335	p.I445	0.191	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	125	0	0	90	16	15.09	-	-	-	T	47428972	C	T	47428972	2	4	275	1	0	0	0	0	0	0	0	1	839	874	31	1		1	ARAF	23	47428972	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	120192	47428972	107841588	5055	30742										
SYN1	0	genome.wustl.edu	37	chrX	47436004	47436004	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcagtgccacgacacttgcGatgtcctggaagtcatgctg	12	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47436004	47436004	G	A	SNP	SYN1	ENST00000295987	human	ensembl	69_37n	-1	known	silent	c.873	p.I291	0.200	pfam_Synapsin_ATP-bd_dom,pfam_ATP-grasp_RimK-type	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056	289	0	0	184	29	13.62	-	-	-	A	47436004	G	A	47436004	2	1	275	1	0	0	0	0	0	0	0	1	15532	1048	37	1		1	SYN1	23	47436004	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7032	47436004	107834556	5056	30743										
ELK1	0	genome.wustl.edu	37	chrX	47500670	47500670	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaggcccggctgagcttgtcGtaattcatgttggtcttgtt	12	8	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47500670	47500670	G	A	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	silent	c.171	p.Y57	0.936	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	300	0	0	262	38	12.58	-	-	-	A	47500670	G	A	47500670	2	1	275	1	0	0	0	0	0	0	0	1	5096	1140	40	1		1	ELK1	23	47500670	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	64666	47500670	107769890	5057	30744										
UXT	0	genome.wustl.edu	37	chrX	47517210	47517210	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcaatgacatttctcagttGaaggtatttggccagctgct	9	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47517210	47517210	G	T	SNP	UXT	ENST00000335890	human	ensembl	69_37n	-1	known	missense	c.187	p.Q63K	1.000	pfam_Prefoldin_subunit,superfamily_Prefoldin,prints_PFD_UXT	pfam_Prefoldin_subunit,superfamily_Prefoldin,prints_PFD_UXT	-	no_errors	UXT	HGNC	ENSG00000126756	488	0	0	305	51	14.33	-	-	-	T	47517210	G	T	47517210	3	4	275	1	0	0	0	0	1	0	0	0	17207	1299	45	2	342	2	UXT	23	47517210	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	16540	47517210	107753350	5058	30745										
ZNF81	0	genome.wustl.edu	37	chrX	47705663	47705663	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaagtccaagtccgtcggGaacatgccagctaacgagga	12	11	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47705663	47705663	G	A	SNP	ZNF81	ENST00000483520	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	ZNF81	HGNC	ENSG00000197779	328	0	0	185	30	13.89	-	-	-	A	47705663	G	A	47705663	1	1	275	0	1	0	0	0	0	0	0	0	18267	1189	41	2		2	ZNF81	23	47705663	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	188453	47705663	107564897	5059	30746										
ZNF630	0	genome.wustl.edu	37	chrX	47918479	47918479	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttttctcctgtatgaattCtttgatgtcctatgaggtgg	10	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	47918479	47918479	C	A	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	missense	c.1352	p.R451I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	265	0	0	175	82	31.91	-	-	-	A	47918479	C	A	47918479	3	1	275	1	0	0	0	0	1	0	0	0	18150	913	32	2	625	2	ZNF630	23	47918479	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	212816	47918479	107352081	5060	30747										
SSX4	0	genome.wustl.edu	37	chrX	48244833	48244833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctttcatgcgtagtaaacGggctgcagacttccacggga	11	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48244833	48244833	G	A	SNP	SSX4	ENST00000376886	human	ensembl	69_37n	1	known	missense	c.224	p.R75Q	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX4	HGNC	ENSG00000204645	91	0	0	67	12	15	-	-	-	A	48244833	G	A	48244833	3	1	275	1	0	0	0	0	1	0	0	0	15297	1116	39	1	234	1	SSX4	23	48244833	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	326354	48244833	107025727	5061	30748										
PORCN	0	genome.wustl.edu	37	chrX	48369815	48369815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctcgtgctgttcctctgccGacattcctcccatcgaggcg	9	17	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48369815	48369815	G	A	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	missense	c.269	p.R90Q	1.000	NULL	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	128	0	0	73	21	22.34	-	-	-	A	48369815	G	A	48369815	3	1	275	1	0	0	0	0	1	0	0	0	12332	1058	37	1	275	1	PORCN	23	48369815	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	124982	48369815	106900745	5062	30749										
TBC1D25	0	genome.wustl.edu	37	chrX	48418594	48418594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcttgaggtcacttggagttCgctgccccctgatcctcctg	11	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48418594	48418594	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1298	p.S433L	0.997	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	45	0	0	46	7	12.96	-	-	-	T	48418594	C	T	48418594	3	4	275	1	0	0	0	0	1	0	0	0	15707	893	31	1	1320	1	TBC1D25	23	48418594	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	48779	48418594	106851966	5063	30750										
HDAC6	0	genome.wustl.edu	37	chrX	48681418	48681418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctgagcggatgaccacacGagaaaagaaggttctggaag	14	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48681418	48681418	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2651	p.R884Q	0.000	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	185	0	0	84	43	33.59	-	-	-	A	48681418	G	A	48681418	3	1	275	1	0	0	0	0	1	0	0	0	7062	1058	37	1	2703	1	HDAC6	23	48681418	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	262824	48681418	106589142	5064	30751										
PQBP1	0	genome.wustl.edu	37	chrX	48760318	48760318	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatccccaggggctgtgcTccgggccaatgcagaggcct	13	15	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48760318	48760318	T	C	SNP	PQBP1	ENST00000218224	human	ensembl	69_37n	1	known	missense	c.755	p.L252P	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	PQBP1	HGNC	ENSG00000102103	51	0	0	32	11	25.58	-	-	-	C	48760318	T	C	48760318	3	2	275	1	0	0	0	0	1	0	0	0	12494	1551	54	5	777	5	PQBP1	23	48760318	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	78900	48760318	106510242	5065	30752										
GRIPAP1	0	genome.wustl.edu	37	chrX	48834733	48834733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttaccctggctggaacagccGagctctccttttcccgcaag	9	15	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48834733	48834733	G	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.2045	p.S682L	0.909	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	733	2	0.27	556	110	16.52	-	-	-	A	48834733	G	A	48834733	3	1	275	1	0	0	0	0	1	0	0	0	6840	1059	37	1	554	1	GRIPAP1	23	48834733	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	74415	48834733	106435827	5066	30753										
GRIPAP1	0	genome.wustl.edu	37	chrX	48838217	48838217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgagaggcaccttcagctcgGcagcgtgctgctcccgacac	12	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48838217	48838217	G	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.1667	p.A556V	0.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	1118	0	0	867	153	14.93	-	-	-	A	48838217	G	A	48838217	3	1	275	1	0	0	0	0	1	0	0	0	6840	1203	42	4	948	4	GRIPAP1	23	48838217	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3484	48838217	106432343	5067	30754										
GRIPAP1	0	genome.wustl.edu	37	chrX	48855719	48855719	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactggtgagttctggtgtCgggaaagcagggaaactcag	16	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48855719	48855719	C	T	SNP	GRIPAP1	ENST00000480041	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	667	2	0.3	562	112	16.62	-	-	-	T	48855719	C	T	48855719	1	4	275	0	1	0	0	0	0	0	0	0	6840	899	31	1		1	GRIPAP1	23	48855719	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	17502	48855719	106414841	5068	30755										
GPKOW	0	genome.wustl.edu	37	chrX	48972150	48972150	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggacatcttcaattatcatCtggggatacaggtcaggggg	13	7	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	48972150	48972150	C	A	SNP	GPKOW	ENST00000156109	human	ensembl	69_37n	-1	known	splice_site	c.1141-1	e9-1	1.000	-	-	-	no_errors	GPKOW	HGNC	ENSG00000068394	226	0	0	180	61	25.31	-	-	-	A	48972150	C	A	48972150	5	1	275	1	0	0	0	0	0	0	1	0	6663	927	32	2	302	2	GPKOW	23	48972150	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	116431	48972150	106298410	5069	30756										
PLP2	0	genome.wustl.edu	37	chrX	49030742	49030742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctatgtcaccttccccgttCggcagccaagacatacagca	7	16	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49030742	49030742	C	T	SNP	PLP2	ENST00000376327	human	ensembl	69_37n	1	known	missense	c.406	p.R136W	0.024	NULL	pfam_MARVEL-like_dom	-	no_errors	PLP2	HGNC	ENSG00000102007	135	0	0	62	13	17.11	-	-	-	T	49030742	C	T	49030742	3	4	275	1	0	0	0	0	1	0	0	0	12179	875	31	1	420	1	PLP2	23	49030742	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	58592	49030742	106239818	5070	30757										
SYP	0	genome.wustl.edu	37	chrX	49055488	49055488	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cccggaactgacccccagccAccagctgaggagagaaacag	11	15	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49055488	49055488	A	G	SNP	SYP	ENST00000263233	human	ensembl	69_37n	-1	known	missense	c.41	p.V14A	1.000	NULL	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYP	HGNC	ENSG00000102003	199	0	0	170	20	10.42	-	-	-	G	49055488	A	G	49055488	3	3	275	1	0	0	0	0	1	0	0	0	15553	159	6	5	920	5	SYP	23	49055488	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	24746	49055488	106215072	5071	30758										
CACNA1F	0	genome.wustl.edu	37	chrX	49077521	49077521	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattctcctgtgggagatcCttctcattgctcttctccct	6	14	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49077521	49077521	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.2340	p.K780	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	465	0	0	463	70	13.13	-	-	-	T	49077521	C	T	49077521	2	4	275	1	0	0	0	0	0	0	0	1	2568	680	24	4		4	CACNA1F	23	49077521	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	22033	49077521	106193039	5072	30759										
CCDC22	0	genome.wustl.edu	37	chrX	49099383	49099383	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attctcctccgggccattggGagccaaattcgggaccagct	11	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49099383	49099383	G	A	SNP	CCDC22	ENST00000376227	human	ensembl	69_37n	1	known	silent	c.393	p.G131	0.623	pfam_DUF812	pfam_DUF812	-	no_errors	CCDC22	HGNC	ENSG00000101997	199	0	0	108	22	16.92	-	-	-	A	49099383	G	A	49099383	2	1	275	1	0	0	0	0	0	0	0	1	2823	1161	41	2		2	CCDC22	23	49099383	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	21862	49099383	106171177	5073	30760										
PPP1R3F	0	genome.wustl.edu	37	chrX	49143236	49143236	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atctggcaaggagccagcctCtcccgtccttctgcaggggc	12	15	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49143236	49143236	C	A	SNP	PPP1R3F	ENST00000055335	human	ensembl	69_37n	1	known	missense	c.2084	p.S695Y	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769	160	0	0	101	14	12.17	-	-	-	A	49143236	C	A	49143236	3	1	275	1	0	0	0	0	1	0	0	0	12452	913	32	2	2098	2	PPP1R3F	23	49143236	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	43853	49143236	106127324	5074	30761										
AKAP4	0	genome.wustl.edu	37	chrX	49958210	49958210	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgcaggttcttcatgcaaGaatcaatcaaatcggacaca	7	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	49958210	49958210	G	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1154	p.S385Y	0.998	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	134	0	0	80	29	26.61	-	-	-	T	49958210	G	T	49958210	3	4	275	1	0	0	0	0	1	0	0	0	453	942	33	2	1418	2	AKAP4	23	49958210	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	814974	49958210	105312350	5075	30762										
CCNB3	0	genome.wustl.edu	37	chrX	50052754	50052754	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccactgccctttaaagaaGaaaaagtgtctttaaagaaa	7	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	50052754	50052754	G	A	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.1585	p.E529K	0.003	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	83	0	0	41	19	31.67	-	-	-	A	50052754	G	A	50052754	3	1	275	1	0	0	0	0	1	0	0	0	2943	943	33	2	1599	2	CCNB3	23	50052754	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	94544	50052754	105217806	5076	30763										
CCNB3	0	genome.wustl.edu	37	chrX	50053025	50053025	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggaggagtcattctataAgaagctgttgccctttaaga	11	6	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	50053025	50053025	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.1856	p.K619T	0.046	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	94	0	0	56	37	39.78	-	-	-	C	50053025	A	C	50053025	3	2	275	1	0	0	0	0	1	0	0	0	2943	72	3	5	1870	5	CCNB3	23	50053025	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	271	50053025	105217535	5077	30764										
DGKK	0	genome.wustl.edu	37	chrX	50119146	50119146	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagacacatgctggtggatCttgctcaggtcattaagtct	10	9	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	50119146	50119146	C	A	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	226	0	0	95	72	43.11	-	-	-	A	50119146	C	A	50119146	1	1	275	0	1	0	0	0	0	0	0	0	4508	912	32	2		2	DGKK	23	50119146	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	66121	50119146	105151414	5078	30765										
DGKK	0	genome.wustl.edu	37	chrX	50136227	50136227	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaattttcggaggaagacGatcccctgatgatcgccact	10	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	50136227	50136227	G	A	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.666	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	183	0	0	154	26	14.44	-	-	-	A	50136227	G	A	50136227	1	1	275	0	1	0	0	0	0	0	0	0	4508	1048	37	1		1	DGKK	23	50136227	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17081	50136227	105134333	5079	30766										
SHROOM4	0	genome.wustl.edu	37	chrX	50341289	50341289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcctggttggcctctgaatCgatgctgttcagagcattct	10	11	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	50341289	50341289	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.4189	p.D1397N	0.998	pfam_ASD2	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	270	0	0	176	61	25.74	-	-	-	T	50341289	C	T	50341289	3	4	275	1	0	0	0	0	1	0	0	0	14385	884	31	1	300	1	SHROOM4	23	50341289	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	205062	50341289	104929271	5080	30767										
NUDT11	0	genome.wustl.edu	37	chrX	51238931	51238931	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaccttgatggcatcttcGactttgaaccactctcgctt	7	12	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	51238931	51238931	G	A	SNP	NUDT11	ENST00000375992	human	ensembl	69_37n	-1	known	silent	c.366	p.V122	0.686	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT11	HGNC	ENSG00000196368	186	0	0	78	10	11.36	-	-	-	A	51238931	G	A	51238931	2	1	275	1	0	0	0	0	0	0	0	1	10800	1045	37	1		1	NUDT11	23	51238931	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	897642	51238931	104031629	5081	30768										
MAGED1	0	genome.wustl.edu	37	chrX	51640912	51640912	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttgggattcaactgaaaGaaattgacaaagaagaacac	8	5	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	51640912	51640912	G	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	nonsense	c.1756	p.E586*	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	169	0	0	110	16	12.7	-	-	-	T	51640912	G	T	51640912	4	4	275	1	0	0	0	0	0	1	0	0	9254	943	33	2	1782	2	MAGED1	23	51640912	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	401981	51640912	103629648	5082	30769										
IQSEC2	0	genome.wustl.edu	37	chrX	53277315	53277315	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaaggcttcgatgagtcGctccactttctgggcctcac	10	14	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53277315	53277315	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	nonsense	c.2563	p.R855*	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	233	0	0	128	20	13.51	-	-	-	A	53277315	G	A	53277315	4	1	275	1	0	0	0	0	0	1	0	0	7872	1095	38	1	1939	1	IQSEC2	23	53277315	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1636403	53277315	101993245	5083	30770										
RIBC1	0	genome.wustl.edu	37	chrX	53453288	53453288	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccatcgaggctagaagaaatCgagaaaaagagcgacaaaac	10	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53453288	53453288	C	T	SNP	RIBC1	ENST00000375327	human	ensembl	69_37n	1	known	nonsense	c.64	p.R22*	0.997	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423	556	0	0	365	57	13.48	-	-	-	T	53453288	C	T	53453288	4	4	275	1	0	0	0	0	0	1	0	0	13436	876	31	1	66	1	RIBC1	23	53453288	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	175973	53453288	101817272	5084	30771										
HUWE1	0	genome.wustl.edu	37	chrX	53560294	53560294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccagcccaaagccttcagaGcactcctggatagccaacag	9	15	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53560294	53560294	G	A	SNP	HUWE1	ENST00000427052	human	ensembl	69_37n	-1	known	missense	c.10201	p.L3401F	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUWE1	HGNC	ENSG00000086758	226	0	0	193	51	20.82	-	-	-	A	53560294	G	A	53560294	3	1	275	1	0	0	0	0	1	0	0	0	7515	963	34	4	27	4	HUWE1	23	53560294	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	107006	53560294	101710266	5085	30772										
HUWE1	0	genome.wustl.edu	37	chrX	53566024	53566024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atggaccagaaagaaggcctCgacagcaggctgtagcacta	12	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53566024	53566024	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.11650	p.E3884K	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	248	0	0	232	34	12.78	-	-	-	T	53566024	C	T	53566024	3	4	275	1	0	0	0	0	1	0	0	0	7515	893	31	1	1510	1	HUWE1	23	53566024	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5730	53566024	101704536	5086	30773										
HUWE1	0	genome.wustl.edu	37	chrX	53574688	53574688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactgtggtcgaagcagctaCgacaatggtggaaatagccg	13	9	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53574688	53574688	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.10582	p.V3528I	0.745	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	760	0	0	505	61	10.74	-	-	-	T	53574688	C	T	53574688	3	4	275	1	0	0	0	0	1	0	0	0	7515	536	19	1	2610	1	HUWE1	23	53574688	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8664	53574688	101695872	5087	30774										
HUWE1	0	genome.wustl.edu	37	chrX	53577889	53577889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcggagaatagcagagagtgCggaggtgctactgtgcccaa	15	8	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53577889	53577889	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.9358	p.A3120T	0.999	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	133	0	0	99	19	15.97	-	-	-	T	53577889	C	T	53577889	3	4	275	1	0	0	0	0	1	0	0	0	7515	768	27	1	3846	1	HUWE1	23	53577889	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3201	53577889	101692671	5088	30775										
PHF8	0	genome.wustl.edu	37	chrX	53966665	53966665	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagggcgccgctgggtcaaGaagacaccgggggccatagg	18	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53966665	53966665	G	A	SNP	PHF8	ENST00000396282	human	ensembl	69_37n	-1	novel	missense	c.2645	p.S882F	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHF8	HGNC	ENSG00000172943	292	0	0	253	38	13.06	-	-	-	A	53966665	G	A	53966665	3	1	275	1	0	0	0	0	1	0	0	0	11914	933	33	2	231	2	PHF8	23	53966665	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	388776	53966665	101303895	5089	30776										
PHF8	0	genome.wustl.edu	37	chrX	53966871	53966871	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgtcagactgagattggagtCttgagggcgaggctgttcta	15	6	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	53966871	53966871	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.2836	p.D946N	0.999	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	465	0	0	383	157	29.02	-	-	-	T	53966871	C	T	53966871	3	4	275	1	0	0	0	0	1	0	0	0	11914	913	32	2	437	2	PHF8	23	53966871	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	206	53966871	101303689	5090	30777										
PHF8	0	genome.wustl.edu	37	chrX	54012304	54012304	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctggccttgagcagatcaaGaatgccaccagcgccactac	10	14	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54012304	54012304	G	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.2182	p.L728I	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	717	0	0	471	77	14.05	-	-	-	T	54012304	G	T	54012304	3	4	275	1	0	0	0	0	1	0	0	0	11914	942	33	2	1194	2	PHF8	23	54012304	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	45433	54012304	101258256	5091	30778										
PHF8	0	genome.wustl.edu	37	chrX	54044120	54044120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtgttcaacatccctcacaGtgaatgatggcgagggcagc	12	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54044120	54044120	G	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.536	p.T179N	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	276	0	0	189	29	13.3	-	-	-	T	54044120	G	T	54044120	3	4	275	1	0	0	0	0	1	0	0	0	11914	1029	36	4	2888	4	PHF8	23	54044120	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	31816	54044120	101226440	5092	30779										
WNK3	0	genome.wustl.edu	37	chrX	54264797	54264797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaccgaccccgctgaaatGatccactcatcgctttacat	7	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54264797	54264797	G	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	nonsense	c.3992	p.S1331*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	279	0	0	217	43	16.54	-	-	-	T	54264797	G	T	54264797	4	4	275	1	0	0	0	0	0	1	0	0	17476	1294	45	2	1434	2	WNK3	23	54264797	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	220677	54264797	101005763	5093	30780										
WNK3	0	genome.wustl.edu	37	chrX	54275241	54275241	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacagaagcttagagcctgtCtgttggaaattaggggattg	14	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54275241	54275241	C	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.3540	p.Q1180H	0.776	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	166	0	0	82	32	28.07	-	-	-	A	54275241	C	A	54275241	3	1	275	1	0	0	0	0	1	0	0	0	17476	912	32	2	1894	2	WNK3	23	54275241	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	10444	54275241	100995319	5094	30781										
WNK3	0	genome.wustl.edu	37	chrX	54275489	54275489	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctccagttttggaggtctttCtccatctgattccaggacag	9	11	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54275489	54275489	C	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	nonsense	c.3292	p.E1098*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	518	2	0.38	375	57	13.19	-	-	-	A	54275489	C	A	54275489	4	1	275	1	0	0	0	0	0	1	0	0	17476	922	32	2	2142	2	WNK3	23	54275489	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	248	54275489	100995071	5095	30782										
WNK3	0	genome.wustl.edu	37	chrX	54282244	54282244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctcttctctgtttgatccGatcctgtttgccatttccac	6	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54282244	54282244	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.2179	p.R727W	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	519	0	0	243	86	25.98	-	-	-	A	54282244	G	A	54282244	3	1	275	1	0	0	0	0	1	0	0	0	17476	1057	37	1	3275	1	WNK3	23	54282244	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6755	54282244	100988316	5096	30783										
TRO	0	genome.wustl.edu	37	chrX	54949181	54949181	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctaagaaaagcaagaccaaGaaggcccctataaagactat	7	10	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	54949181	54949181	G	T	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.216	p.K72N	0.990	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	242	0	0	176	89	33.46	-	-	-	T	54949181	G	T	54949181	3	4	275	1	0	0	0	0	1	0	0	0	16670	933	33	2	222	2	TRO	23	54949181	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	666937	54949181	100321379	5097	30784										
UBQLN2	0	genome.wustl.edu	37	chrX	56591370	56591370	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgctactgggaacaccgttgCtgccgctaattatgtcgcca	10	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	56591370	56591370	C	A	SNP	UBQLN2	ENST00000338222	human	ensembl	69_37n	1	known	missense	c.1064	p.A355D	0.996	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN2	HGNC	ENSG00000188021	76	0	0	30	8	21.05	-	-	-	A	56591370	C	A	56591370	3	1	275	1	0	0	0	0	1	0	0	0	16994	797	28	4	1066	4	UBQLN2	23	56591370	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1642189	56591370	98679190	5098	30785										
ARHGEF9	0	genome.wustl.edu	37	chrX	62857911	62857911	+	Frame_Shift_Del	DEL	T	T	-													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcctccctgtaggtatcaTtttttgaagggggttaacct							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	62857911	62857911	T	-	DEL	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	frame_shift_del	c.1548	p.K516fs	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	334	0	0	292	38	11.45	-	-	-	-	62857911	T	-	62857911	7	5	275	1	0	1	0	1	0	0	0	0	914	1490	52	0	6	0	ARHGEF9	23	62857911	Frame_Shift_Del	DEL	T	TCGA-AN-A046-01A-21W-A050-09	6266541	62857911	92412649	5099	30786										
MTMR8	0	genome.wustl.edu	37	chrX	63445286	63445286	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacagctcaagtggccataaGaagcagccaagcgcaagggt	12	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	63445286	63445286	G	T	SNP	MTMR8	ENST00000453546	human	ensembl	69_37n	-1	known	missense	c.1370	p.S457Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myotub-related,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043	356	0	0	280	59	17.4	-	-	-	T	63445286	G	T	63445286	3	4	275	1	0	0	0	0	1	0	0	0	10021	942	33	2		2	MTMR8	23	63445286	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	587375	63445286	91825274	5100	30787										
ZC3H12B	0	genome.wustl.edu	37	chrX	64718922	64718922	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaaggaaaagattcttgtCttcacaccatcccgaagagt	9	9	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	64718922	64718922	C	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	silent	c.792	p.V264	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	136	0	0	72	26	26.26	-	-	-	T	64718922	C	T	64718922	2	4	275	1	0	0	0	0	0	0	0	1	17658	900	32	2		2	ZC3H12B	23	64718922	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1273636	64718922	90551638	5101	30788										
HEPH	0	genome.wustl.edu	37	chrX	65382719	65382719	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caagatctcctcatcacaaaGtaagaatatcaggtggtgga	9	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	65382719	65382719	G	T	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	splice_site	c.149+1	e1+1	0.999	-	-	-	no_errors	HEPH	HGNC	ENSG00000089472	224	0	0	173	64	26.89	-	-	-	T	65382719	G	T	65382719	5	4	275	1	0	0	0	0	0	0	1	0	7105	1043	36	4	152	4	HEPH	23	65382719	Splice_Site	SNP	G	TCGA-AN-A046-01A-21W-A050-09	663797	65382719	89887841	5102	30789										
HEPH	0	genome.wustl.edu	37	chrX	65390556	65390556	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagggaagaaatgtcatcacGaaccagcctctggacagtga	11	9	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	65390556	65390556	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	silent	c.306	p.T102	0.535	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	253	1	0.39	135	42	23.6	-	-	-	A	65390556	G	A	65390556	2	1	275	1	0	0	0	0	0	0	0	1	7105	1045	37	1		1	HEPH	23	65390556	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7837	65390556	89880004	5103	30790										
HEPH	0	genome.wustl.edu	37	chrX	65408350	65408350	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgcttcagtggacaaagaaGatgagacatttcaggagagc	12	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	65408350	65408350	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.937	p.D313N	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	345	0	0	196	81	29.24	-	-	-	A	65408350	G	A	65408350	3	1	275	1	0	0	0	0	1	0	0	0	7105	942	33	2	955	2	HEPH	23	65408350	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17794	65408350	89862210	5104	30791										
PJA1	0	genome.wustl.edu	37	chrX	68381749	68381749	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcctgaagagatggttctcGaacttcttcaaggtaattgc	9	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	68381749	68381749	G	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	nonsense	c.1333	p.R445*	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	24	0	0	22	11	33.33	-	-	-	A	68381749	G	A	68381749	4	1	275	1	0	0	0	0	0	1	0	0	12035	1066	37	1	602	1	PJA1	23	68381749	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2973399	68381749	86888811	5105	30792										
PJA1	0	genome.wustl.edu	37	chrX	68382056	68382056	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagggtcggccatggtgcgTcgtcgtctcggcaccttttc	13	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	68382056	68382056	T	C	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	silent	c.1026	p.R342	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	72	0	0	57	16	21.92	-	-	-	C	68382056	T	C	68382056	2	2	275	1	0	0	0	0	0	0	0	1	12035	1654	58	5		5	PJA1	23	68382056	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	307	68382056	86888504	5106	30793										
PJA1	0	genome.wustl.edu	37	chrX	68382676	68382676	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccctctcactggcggtcGctcaacaggcccagccccct	8	19	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	68382676	68382676	G	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	nonsense	c.406	p.R136*	0.847	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	46	0	0	22	11	33.33	-	-	-	A	68382676	G	A	68382676	4	1	275	1	0	0	0	0	0	1	0	0	12035	1095	38	1	1529	1	PJA1	23	68382676	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	620	68382676	86887884	5107	30794										
EDA	0	genome.wustl.edu	37	chrX	69176943	69176943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aagaagaaagtaggcgtgttCgccgcaataaaagaagcaaa	11	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	69176943	69176943	C	T	SNP	EDA	ENST00000374552	human	ensembl	69_37n	1	known	missense	c.463	p.R155C	0.911	NULL	pfam_TNF,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	-	no_errors	EDA	HGNC	ENSG00000158813	755	0	0	627	114	15.34	-	-	-	T	69176943	C	T	69176943	3	4	275	1	0	0	0	0	1	0	0	0	4938	884	31	1	570	1	EDA	23	69176943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	794267	69176943	86093617	5108	30795										
AWAT2	0	genome.wustl.edu	37	chrX	69263346	69263346	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctgtagacattacatattCtctgaggaaaggcatccaga	8	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	69263346	69263346	C	A	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	nonsense	c.454	p.E152*	1.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	144	0	0	126	14	10	-	-	-	A	69263346	C	A	69263346	4	1	275	1	0	0	0	0	0	1	0	0	1239	922	32	2	563	2	AWAT2	23	69263346	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	86403	69263346	86007214	5109	30796										
ARR3	0	genome.wustl.edu	37	chrX	69496527	69496527	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccctttacagccctgtggGattgactttgaagtgaagag	12	8	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	69496527	69496527	G	A	SNP	ARR3	ENST00000307959	human	ensembl	69_37n	1	known	silent	c.414	p.G138	0.923	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500	383	0	0	341	48	12.34	-	-	-	A	69496527	G	A	69496527	2	1	275	1	0	0	0	0	0	0	0	1	983	1161	41	2		2	ARR3	23	69496527	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	233181	69496527	85774033	5110	30797										
RAB41	0	genome.wustl.edu	37	chrX	69502672	69502672	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcaactgttggaattgacttCttgtctaagaccatgtactt	8	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	69502672	69502672	C	A	SNP	RAB41	ENST00000374473	human	ensembl	69_37n	1	known	missense	c.204	p.F68L	0.996	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB41	HGNC	ENSG00000147127	565	0	0	442	155	25.96	-	-	-	A	69502672	C	A	69502672	3	1	275	1	0	0	0	0	1	0	0	0	13026	912	32	2	211	2	RAB41	23	69502672	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6145	69502672	85767888	5111	30798										
KIF4A	0	genome.wustl.edu	37	chrX	69516985	69516985	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	taatacaactgctcttcaaaGaaattgataaaaagagtgac	6	6	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	69516985	69516985	G	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	nonsense	c.373	p.E125*	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	271	0	0	162	30	15.62	-	-	-	T	69516985	G	T	69516985	4	4	275	1	0	0	0	0	0	1	0	0	8355	943	33	2	383	2	KIF4A	23	69516985	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14313	69516985	85753575	5112	30799										
SLC7A3	0	genome.wustl.edu	37	chrX	70146752	70146752	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaggaacaaacatagacaaTttggccagagagtggagtgg	14	5	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70146752	70146752	T	A	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	missense	c.1426	p.I476F	0.011	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	350	0	0	352	56	13.73	-	-	-	A	70146752	T	A	70146752	3	1	275	1	0	0	0	0	1	0	0	0	14787	1493	52	5	449	5	SLC7A3	23	70146752	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	629767	70146752	85123808	5113	30800										
FOXO4	0	genome.wustl.edu	37	chrX	70316735	70316735	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccattgaaagcgccccggaGaagcgactgacacttgccca	11	14	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70316735	70316735	G	T	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	missense	c.357	p.E119D	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	406	0	0	243	103	29.68	-	-	-	T	70316735	G	T	70316735	3	4	275	1	0	0	0	0	1	0	0	0	6073	933	33	2	359	2	FOXO4	23	70316735	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	169983	70316735	84953825	5114	30801										
MED12	0	genome.wustl.edu	37	chrX	70339208	70339208	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaaaaaacaactaaacgccGctttcctgcctcaggatgaa	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70339208	70339208	G	A	SNP	MED12	ENST00000429213	human	ensembl	69_37n	1	known	silent	c.39	p.P13	0.000	NULL	pfam_Mediator_Med12	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MED12	HGNC	ENSG00000184634	154	0	0	86	11	11.34	-	-	-	A	70339208	G	A	70339208	2	1	275	1	0	0	0	0	0	0	0	1	9499	1102	38	1		1	MED12	23	70339208	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	22473	70339208	84931352	5115	30802										
ZMYM3	0	genome.wustl.edu	37	chrX	70460695	70460695	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtagcattggttcctgggCctgtcaccctgagggacatg	14	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70460695	70460695	C	T	SNP	ZMYM3	ENST00000489332	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	ZMYM3	HGNC	ENSG00000147130	85	0	0	71	18	20.22	-	-	-	T	70460695	C	T	70460695	1	4	275	0	1	0	0	0	0	0	0	0	17797	754	26	4		4	ZMYM3	23	70460695	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	121487	70460695	84809865	5116	30803										
ZMYM3	0	genome.wustl.edu	37	chrX	70469955	70469955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatcgggcgctgctgctggGcctcatacagggagagacag	17	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70469955	70469955	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.1178	p.A393V	1.000	smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	221	0	0	108	36	24.66	-	-	-	A	70469955	G	A	70469955	3	1	275	1	0	0	0	0	1	0	0	0	17797	1203	42	4	3038	4	ZMYM3	23	70469955	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9260	70469955	84800605	5117	30804										
TAF1	0	genome.wustl.edu	37	chrX	70602467	70602467	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcatctctgaagaagagtcGaattctcttagggaaaacag	9	7	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70602467	70602467	G	T	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.1616	p.R539L	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	233	0	0	205	62	23.22	-	-	-	T	70602467	G	T	70602467	3	4	275	1	0	0	0	0	1	0	0	0	15605	1058	37	3	1717	3	TAF1	23	70602467	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	132512	70602467	84668093	5118	30805										
OGT	0	genome.wustl.edu	37	chrX	70757738	70757738	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttctggcagaagcttattCgaatttggggaatgtgtaca	11	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70757738	70757738	C	T	SNP	OGT	ENST00000455587	human	ensembl	69_37n	1	putative	nonsense	c.157	p.R53*	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OGT	HGNC	ENSG00000147162	208	0	0	194	64	24.81	-	-	-	T	70757738	C	T	70757738	4	4	275	1	0	0	0	0	0	1	0	0	10920	893	31	1	288	1	OGT	23	70757738	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	155271	70757738	84512822	5119	30806										
OGT	0	genome.wustl.edu	37	chrX	70775170	70775170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acacctacaggcgggctatcGaactacaaccacatttccct	6	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70775170	70775170	G	A	SNP	OGT	ENST00000373719	human	ensembl	69_37n	1	known	missense	c.859	p.E287K	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	138	1	0.72	95	33	25.78	-	-	-	A	70775170	G	A	70775170	3	1	275	1	0	0	0	0	1	0	0	0	10920	1059	37	1	885	1	OGT	23	70775170	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17432	70775170	84495390	5120	30807										
ACRC	0	genome.wustl.edu	37	chrX	70800700	70800700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgcaaaaaagagctgccccGcttgcaagagccggaggagg	15	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70800700	70800700	G	A	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.29	p.R10H	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	519	0	0	290	61	17.38	-	-	-	A	70800700	G	A	70800700	3	1	275	1	0	0	0	0	1	0	0	0	171	1087	38	1	31	1	ACRC	23	70800700	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	25530	70800700	84469860	5121	30808										
ACRC	0	genome.wustl.edu	37	chrX	70823863	70823863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgatgattcggaagctcccGacgacagcagtgatgattcg	13	9	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	70823863	70823863	G	A	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.736	p.D246N	0.048	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	205	0	0	152	64	29.49	-	-	-	A	70823863	G	A	70823863	3	1	275	1	0	0	0	0	1	0	0	0	171	1058	37	1	762	1	ACRC	23	70823863	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23163	70823863	84446697	5122	30809										
PHKA1	0	genome.wustl.edu	37	chrX	71830979	71830979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gccatacagctcggtaagaaGctctctcactgtagcactcc	8	14	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	71830979	71830979	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.2425	p.L809F	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	204	0	0	105	13	11.02	-	-	-	A	71830979	G	A	71830979	3	1	275	1	0	0	0	0	1	0	0	0	11917	971	34	4	1290	4	PHKA1	23	71830979	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1007116	71830979	83439581	5123	30810										
ZCCHC13	0	genome.wustl.edu	37	chrX	73524265	73524265	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgctgtggtgagtccggtcGtaatgctaagaactgtgtcc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	73524265	73524265	G	A	SNP	ZCCHC13	ENST00000339534	human	ensembl	69_37n	1	known	missense	c.164	p.R55H	0.822	superfamily_Znf_CCHC,smart_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969	129	1	0.77	111	18	13.85	-	-	-	A	73524265	G	A	73524265	3	1	275	1	0	0	0	0	1	0	0	0	17678	1145	40	1	166	1	ZCCHC13	23	73524265	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1693286	73524265	81746295	5124	30811	251	2								
ZCCHC13	0	genome.wustl.edu	37	chrX	73524275	73524275	+	Missense_Mutation	SNP	G	G	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagtccggtcgtaatgctaaGaactgtgtccttctcggaaa							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	73524275	73524275	G	T	SNP	ZCCHC13	ENST00000339534	human	ensembl	69_37n	1	known	missense	c.174	p.K58N	0.015	superfamily_Znf_CCHC,smart_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969	144	0	0	111	21	15.91	-	-	-	T	73524275	G	T	73524275	3	4	275	1	0	0	0	0	1	0	0	0	17678	933	33	2	176	2	ZCCHC13	23	73524275	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	10	73524275	81746285	5125	30812	251	2								
SLC16A2	0	genome.wustl.edu	37	chrX	73749120	73749120	+	Missense_Mutation	SNP	G	G	A													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggacttcgggggccttatcGtcgtctgtcttttcctgggc							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	73749120	73749120	G	A	SNP	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	missense	c.1465	p.V489I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	667	0	0	402	55	11.96	-	-	-	A	73749120	G	A	73749120	3	1	275	1	0	0	0	0	1	0	0	0	14497	1145	40	1	1483	1	SLC16A2	23	73749120	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	224845	73749120	81521440	5126	30813	252	2								
SLC16A2	0	genome.wustl.edu	37	chrX	73749122	73749122	+	Silent	SNP	C	C	T													0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacttcgggggccttatcgtCgtctgtcttttcctgggcct							TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	73749122	73749122	C	T	SNP	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	silent	c.1467	p.V489	0.994	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	661	0	0	361	94	20.66	-	-	-	T	73749122	C	T	73749122	2	4	275	1	0	0	0	0	0	0	0	1	14497	871	31	1		1	SLC16A2	23	73749122	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2	73749122	81521438	5127	30814	252	2								
UPRT	0	genome.wustl.edu	37	chrX	74494390	74494390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	actccttcctagaggactgcGaactctcccggcagatcggg	11	14	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	74494390	74494390	G	A	SNP	UPRT	ENST00000373383	human	ensembl	69_37n	1	known	missense	c.301	p.E101K	0.878	NULL	pfam_PRibTrfase	-	no_errors	UPRT	HGNC	ENSG00000094841	137	0	0	69	37	34.91	-	-	-	A	74494390	G	A	74494390	3	1	275	1	0	0	0	0	1	0	0	0	17111	1059	37	1	303	1	UPRT	23	74494390	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	745268	74494390	80776170	5128	30815										
ZDHHC15	0	genome.wustl.edu	37	chrX	74636953	74636953	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcctcgttgtcttcccaggtTtcttcatttgctagcagtgg	9	11	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	74636953	74636953	T	G	SNP	ZDHHC15	ENST00000373367	human	ensembl	69_37n	-1	known	missense	c.936	p.E312D	0.986	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383	562	0	0	396	153	27.87	-	-	-	G	74636953	T	G	74636953	3	3	275	1	0	0	0	0	1	0	0	0	17701	1838	64	5	85	5	ZDHHC15	23	74636953	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	142563	74636953	80633607	5129	30816										
ZDHHC15	0	genome.wustl.edu	37	chrX	74651338	74651338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggcttgatcagatgacaccGgtcacagaatcgtacagcta	10	10	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	74651338	74651338	G	A	SNP	ZDHHC15	ENST00000373367	human	ensembl	69_37n	-1	known	missense	c.397	p.R133W	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383	284	0	0	173	58	24.79	-	-	-	A	74651338	G	A	74651338	3	1	275	1	0	0	0	0	1	0	0	0	17701	1115	39	1	644	1	ZDHHC15	23	74651338	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14385	74651338	80619222	5130	30817										
CXorf26	0	genome.wustl.edu	37	chrX	75395422	75395422	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagatgtgttggacccagaaGaactcaagtcagaatcagcc	10	9	3	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	75395422	75395422	G	T	SNP	CXorf26	ENST00000373358	human	ensembl	69_37n	1	known	nonsense	c.271	p.E91*	1.000	pfam_Put_polysacc_synth	pfam_Put_polysacc_synth	-	no_errors	CXorf26	HGNC	ENSG00000102390	225	1	0.44	144	23	13.69	-	-	-	T	75395422	G	T	75395422	4	4	275	1	0	0	0	0	0	1	0	0	4135	943	33	2	285	2	CXorf26	23	75395422	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	744084	75395422	79875138	5131	30818										
ATRX	0	genome.wustl.edu	37	chrX	76855269	76855269	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaggctataaattcatccatActgtcttcatcaaaataacc	4	10	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76855269	76855269	A	G	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	silent	c.5718	p.S1906	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	224	0	0	179	23	11.33	-	-	-	G	76855269	A	G	76855269	2	3	275	1	0	0	0	0	0	0	0	1	1212	388	14	5		5	ATRX	23	76855269	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	1459847	76855269	78415291	5132	30819										
ATRX	0	genome.wustl.edu	37	chrX	76891541	76891541	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtgaagcatcttcaatttCtatcacctacaagaaaagga	8	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76891541	76891541	C	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	nonsense	c.4564	p.E1522*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	225	0	0	175	50	22.22	-	-	-	A	76891541	C	A	76891541	4	1	275	1	0	0	0	0	0	1	0	0	1212	922	32	2	2994	2	ATRX	23	76891541	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	36272	76891541	78379019	5133	30820										
ATRX	0	genome.wustl.edu	37	chrX	76937356	76937356	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttctttccctcaattctattCttttcagtctcttatcagaa	2	11	7	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76937356	76937356	C	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.3392	p.R1131I	0.980	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	75	0	0	73	21	22.34	-	-	-	A	76937356	C	A	76937356	3	1	275	1	0	0	0	0	1	0	0	0	1212	913	32	2	4194	2	ATRX	23	76937356	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	45815	76937356	78333204	5134	30821										
ATRX	0	genome.wustl.edu	37	chrX	76937587	76937587	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataattcatccttctttttaGaagttttatctcttattttt	2	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76937587	76937587	G	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.3161	p.S1054F	0.918	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	109	0	0	64	13	16.88	-	-	-	A	76937587	G	A	76937587	3	1	275	1	0	0	0	0	1	0	0	0	1212	942	33	2	4425	2	ATRX	23	76937587	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	231	76937587	78332973	5135	30822										
ATRX	0	genome.wustl.edu	37	chrX	76938943	76938943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaacttcctgacaatcagcaCctttaattggggaattagaa	8	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76938943	76938943	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.1805	p.G602D	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	153	0	0	156	30	15.96	-	-	-	T	76938943	C	T	76938943	3	4	275	1	0	0	0	0	1	0	0	0	1212	507	18	4	5781	4	ATRX	23	76938943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1356	76938943	78331617	5136	30823										
ATRX	0	genome.wustl.edu	37	chrX	76939514	76939514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcgaaactcggaatttaagtCttcttccaatgcaagatgag	8	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	76939514	76939514	C	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.1234	p.D412Y	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	271	0	0	218	72	24.83	-	-	-	A	76939514	C	A	76939514	3	1	275	1	0	0	0	0	1	0	0	0	1212	913	32	2	6352	2	ATRX	23	76939514	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	571	76939514	78331046	5137	30824										
PGAM4	0	genome.wustl.edu	37	chrX	77224913	77224913	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactggcagccacatctgatCaatggcatctagcactgtcc	8	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	77224913	77224913	C	T	SNP	PGAM4	ENST00000458128	human	ensembl	69_37n	-1	known	missense	c.223	p.D75N	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM4	HGNC	ENSG00000226784	184	0	0	86	41	32.28	-	-	-	T	77224913	C	T	77224913	3	4	275	1	0	0	0	0	1	0	0	0	11849	826	29	2	545	2	PGAM4	23	77224913	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	285399	77224913	78045647	5138	30825										
ATP7A	0	genome.wustl.edu	37	chrX	77245057	77245057	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcatagtagtttctttagaGaataggtctgccattgtgaa	10	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	77245057	77245057	G	T	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.939	p.E313D	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	234	0	0	133	58	30.37	-	-	-	T	77245057	G	T	77245057	3	4	275	1	0	0	0	0	1	0	0	0	1194	933	33	2	949	2	ATP7A	23	77245057	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20144	77245057	78025503	5139	30826										
TBX22	0	genome.wustl.edu	37	chrX	79277898	79277898	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaaaagggcggagaggaaGaggaggagagaaggagcagc	20	3	0	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	79277898	79277898	G	A	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.130	p.E44K	0.078	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	292	0	0	165	48	22.43	-	-	-	A	79277898	G	A	79277898	3	1	275	1	0	0	0	0	1	0	0	0	15753	943	33	2	132	2	TBX22	23	79277898	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2032841	79277898	75992662	5140	30827										
FAM46D	0	genome.wustl.edu	37	chrX	79698162	79698162	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caatggaggtaaaaccaaaaGacatcattcatgttgtgaaa	8	6	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	79698162	79698162	G	T	SNP	FAM46D	ENST00000308293	human	ensembl	69_37n	1	known	missense	c.124	p.D42Y	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	282	0	0	161	22	12.02	-	-	-	T	79698162	G	T	79698162	3	4	275	1	0	0	0	0	1	0	0	0	5614	942	33	2	126	2	FAM46D	23	79698162	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	420264	79698162	75572398	5141	30828										
BRWD3	0	genome.wustl.edu	37	chrX	79932158	79932158	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctggctttttctgtcatttTacgcactctgcctgatctgg	8	12	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	79932158	79932158	T	C	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.5359	p.K1787E	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	210	0	0	178	36	16.82	-	-	-	C	79932158	T	C	79932158	3	2	275	1	0	0	0	0	1	0	0	0	1534	1763	61	5	53	5	BRWD3	23	79932158	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	233996	79932158	75338402	5142	30829										
BRWD3	0	genome.wustl.edu	37	chrX	79971733	79971733	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatgtcaccttttgcagttcGacattcttcctgtaccctaa	5	12	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	79971733	79971733	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	nonsense	c.2248	p.R750*	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	287	0	0	113	14	11.02	-	-	-	A	79971733	G	A	79971733	4	1	275	1	0	0	0	0	0	1	0	0	1534	1066	37	1	3248	1	BRWD3	23	79971733	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	39575	79971733	75298827	5143	30830										
BRWD3	0	genome.wustl.edu	37	chrX	79990692	79990692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcagtaaatttcaccgggcGatctctaaagataaaaataa	6	8	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	79990692	79990692	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.919	p.R307C	1.000	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	186	0	0	139	19	11.8	-	-	-	A	79990692	G	A	79990692	3	1	275	1	0	0	0	0	1	0	0	0	1534	1058	37	1	4617	1	BRWD3	23	79990692	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	18959	79990692	75279868	5144	30831										
POU3F4	0	genome.wustl.edu	37	chrX	82764286	82764286	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagacagcctccagttggaGaaggaagtggtgcgtgtctg	16	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	82764286	82764286	G	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	missense	c.954	p.E318D	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	123	0	0	80	21	20.79	-	-	-	T	82764286	G	T	82764286	3	4	275	1	0	0	0	0	1	0	0	0	12350	933	33	2	956	2	POU3F4	23	82764286	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2773594	82764286	72506274	5145	30832										
CYLC1	0	genome.wustl.edu	37	chrX	83128337	83128337	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagattcaaagaattccaaGaagacaaacactgaattcct	5	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	83128337	83128337	G	T	SNP	CYLC1	ENST00000329312	human	ensembl	69_37n	1	known	missense	c.621	p.K207N	0.000	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035	44	0	0	50	6	10.71	-	-	-	T	83128337	G	T	83128337	3	4	275	1	0	0	0	0	1	0	0	0	4172	933	33	2	635	2	CYLC1	23	83128337	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	364051	83128337	72142223	5146	30833										
RPS6KA6	0	genome.wustl.edu	37	chrX	83402052	83402052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccctctccatctttgtccGaactctgtctcgaactaaaa	4	14	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	83402052	83402052	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	missense	c.355	p.R119W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	1034	0	0	460	152	24.76	-	-	-	A	83402052	G	A	83402052	3	1	275	1	0	0	0	0	1	0	0	0	13741	1057	37	1	1954	1	RPS6KA6	23	83402052	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	273715	83402052	71868508	5147	30834										
HDX	0	genome.wustl.edu	37	chrX	83581232	83581232	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcattgctaatatcaagcttCtaacaaaagtctgaagttta	5	7	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	83581232	83581232	C	A	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.1901	p.R634I	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	374	0	0	169	72	29.88	-	-	-	A	83581232	C	A	83581232	3	1	275	1	0	0	0	0	1	0	0	0	7077	913	32	2	179	2	HDX	23	83581232	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	179180	83581232	71689328	5148	30835										
APOOL	0	genome.wustl.edu	37	chrX	84309402	84309402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggatacagtacaatttggaaAaggtaggtgagtagataatt	12	2	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	84309402	84309402	A	G	SNP	APOOL	ENST00000373173	human	ensembl	69_37n	1	known	missense	c.293	p.K98R	1.000	pfam_Apolipoprotein_O	pfam_Apolipoprotein_O	-	no_errors	APOOL	HGNC	ENSG00000155008	1100	0	0	558	82	12.81	-	-	-	G	84309402	A	G	84309402	3	3	275	1	0	0	0	0	1	0	0	0	816	14	1	5	307	5	APOOL	23	84309402	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	728170	84309402	70961158	5149	30836										
POF1B	0	genome.wustl.edu	37	chrX	84585967	84585967	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacagtaccttcctccaattCtctgcaaatgttctaataag	4	11	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	84585967	84585967	C	A	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	missense	c.842	p.R281I	1.000	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	620	0	0	421	66	13.52	-	-	-	A	84585967	C	A	84585967	3	1	275	1	0	0	0	0	1	0	0	0	12256	913	32	2	971	2	POF1B	23	84585967	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	276565	84585967	70684593	5150	30837										
CHM	0	genome.wustl.edu	37	chrX	85149241	85149241	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaacataactcaatgacccGaacagcaaaagttcctggtt	7	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	85149241	85149241	G	A	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.1462	p.R488W	0.007	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	563	0	0	356	119	25.05	-	-	-	A	85149241	G	A	85149241	3	1	275	1	0	0	0	0	1	0	0	0	3379	1057	37	1	515	1	CHM	23	85149241	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	563274	85149241	70121319	5151	30838										
KLHL4	0	genome.wustl.edu	37	chrX	86877241	86877241	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgaggtaataaaaaaccaaGaattcctcctgcttccagct	6	10	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	86877241	86877241	G	T	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	nonsense	c.955	p.E319*	1.000	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	223	0	0	120	17	12.41	-	-	-	T	86877241	G	T	86877241	4	4	275	1	0	0	0	0	0	1	0	0	8444	943	33	2	973	2	KLHL4	23	86877241	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1728000	86877241	68393319	5152	30839										
FAM133A	0	genome.wustl.edu	37	chrX	92964429	92964429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaggcaccatggggaagcGggataatcgggtagcctata	14	8	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	92964429	92964429	G	A	SNP	FAM133A	ENST00000322139	human	ensembl	69_37n	1	known	missense	c.11	p.R4Q	0.003	NULL	NULL	-	no_errors	FAM133A	HGNC	ENSG00000179083	24	0	0	21	6	22.22	-	-	-	A	92964429	G	A	92964429	3	1	275	1	0	0	0	0	1	0	0	0	5483	1116	39	1	13	1	FAM133A	23	92964429	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	6087188	92964429	62306131	5153	30840										
DIAPH2	0	genome.wustl.edu	37	chrX	95990781	95990781	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaaataaaaactttggcaGatgatgtggtaaggtggtct	11	4	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	95990781	95990781	G	T	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.157	p.D53Y	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	1299	0	0	739	111	13.06	-	-	-	T	95990781	G	T	95990781	3	4	275	1	0	0	0	0	1	0	0	0	4555	942	33	2	163	2	DIAPH2	23	95990781	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3026352	95990781	59279779	5154	30841										
RPA4	0	genome.wustl.edu	37	chrX	96140074	96140074	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatcccactgtggatcgggaGcattttaagtctgctgattg	11	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	96140074	96140074	G	T	SNP	RPA4	ENST00000373040	human	ensembl	69_37n	1	known	missense	c.765	p.E255D	0.014	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	115	0	0	67	21	23.86	-	-	-	T	96140074	G	T	96140074	3	4	275	1	0	0	0	0	1	0	0	0	13625	962	34	4	767	4	RPA4	23	96140074	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	149293	96140074	59130486	5155	30842										
PCDH19	0	genome.wustl.edu	37	chrX	99657819	99657819	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttttcttcttgcttgatttCttttgatgcccataggagta	7	7	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	99657819	99657819	C	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.2319	p.K773N	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	401	0	0	341	57	14.32	-	-	-	A	99657819	C	A	99657819	3	1	275	1	0	0	0	0	1	0	0	0	11587	912	32	2	1143	2	PCDH19	23	99657819	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	3517745	99657819	55612741	5156	30843										
PCDH19	0	genome.wustl.edu	37	chrX	99662737	99662737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggtcgatctgaaagagctCgcgcgtgcggtcgttgacgt	16	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	99662737	99662737	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.859	p.E287K	0.981	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	99	0	0	60	19	23.75	-	-	-	T	99662737	C	T	99662737	3	4	275	1	0	0	0	0	1	0	0	0	11587	893	31	1	2611	1	PCDH19	23	99662737	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	4918	99662737	55607823	5157	30844										
TNMD	0	genome.wustl.edu	37	chrX	99848939	99848939	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcaatggagagaagaagaaGatttacatggaaattgatcc	11	4	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	99848939	99848939	G	T	SNP	TNMD	ENST00000373031	human	ensembl	69_37n	1	known	missense	c.228	p.K76N	1.000	NULL	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005	335	1	0.3	318	46	12.64	-	-	-	T	99848939	G	T	99848939	3	4	275	1	0	0	0	0	1	0	0	0	16417	933	33	2	238	2	TNMD	23	99848939	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	186202	99848939	55421621	5158	30845										
TNMD	0	genome.wustl.edu	37	chrX	99849291	99849291	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tctacttcgtgggtcttcaaAaatgttttatcaaaactcag	6	8	5	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	99849291	99849291	A	G	SNP	TNMD	ENST00000373031	human	ensembl	69_37n	1	known	missense	c.355	p.K119E	1.000	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005	379	1	0.26	274	102	27.13	-	-	-	G	99849291	A	G	99849291	3	3	275	1	0	0	0	0	1	0	0	0	16417	15	1	5	369	5	TNMD	23	99849291	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	352	99849291	55421269	5159	30846										
SYTL4	0	genome.wustl.edu	37	chrX	99942064	99942064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggttccagaagcactcacGggttagagcgcttcttggct	12	11	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	99942064	99942064	G	A	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	missense	c.1190	p.P397L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	128	0	0	103	17	14.17	-	-	-	A	99942064	G	A	99942064	3	1	275	1	0	0	0	0	1	0	0	0	15577	1130	39	1	859	1	SYTL4	23	99942064	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	92773	99942064	55328496	5160	30847										
CENPI	0	genome.wustl.edu	37	chrX	100356176	100356176	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaacaggatccaagcaactcGaagaacatctcaaaacatgg	7	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100356176	100356176	G	A	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	silent	c.117	p.S39	0.001	pfam_Centromere_CenpI	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	265	0	0	214	54	20.15	-	-	-	A	100356176	G	A	100356176	2	1	275	1	0	0	0	0	0	0	0	1	3262	1045	37	1		1	CENPI	23	100356176	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	414112	100356176	54914384	5161	30848										
TAF7L	0	genome.wustl.edu	37	chrX	100547877	100547877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcaggaatctgggtgccttCgtcgccagcaatgtcggcgc	15	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100547877	100547877	C	T	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.157	p.E53K	0.003	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	136	0	0	60	31	34.07	-	-	-	T	100547877	C	T	100547877	3	4	275	1	0	0	0	0	1	0	0	0	15625	893	31	1	1283	1	TAF7L	23	100547877	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	191701	100547877	54722683	5162	30849										
GLA	0	genome.wustl.edu	37	chrX	100652808	100652808	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaacattttaaagtaagtCttttaatgacatctgcattg	5	5	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100652808	100652808	C	A	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.1279	p.D427Y	0.000	NULL	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	106	0	0	111	15	11.9	-	-	-	A	100652808	C	A	100652808	3	1	275	1	0	0	0	0	1	0	0	0	6478	913	32	2	14	2	GLA	23	100652808	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	104931	100652808	54617752	5163	30850										
ARMCX1	0	genome.wustl.edu	37	chrX	100808691	100808691	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaactgataaaaacaaaaGaccccataattagggaaaag	6	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100808691	100808691	G	T	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.778	p.D260Y	0.987	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	192	0	0	177	53	23.04	-	-	-	T	100808691	G	T	100808691	3	4	275	1	0	0	0	0	1	0	0	0	963	942	33	2	780	2	ARMCX1	23	100808691	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155883	100808691	54461869	5164	30851										
ARMCX1	0	genome.wustl.edu	37	chrX	100808833	100808833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggactcagctgtgcagatggCtgggctaagactgttaacca	13	9	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100808833	100808833	C	T	SNP	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	missense	c.920	p.A307V	0.996	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	303	0	0	271	48	15.05	-	-	-	T	100808833	C	T	100808833	3	4	275	1	0	0	0	0	1	0	0	0	963	797	28	4	922	4	ARMCX1	23	100808833	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	142	100808833	54461727	5165	30852										
ARMCX6	0	genome.wustl.edu	37	chrX	100871324	100871324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctgttttattgggtgtgctCggttggccttgcctccccct	12	12	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100871324	100871324	C	T	SNP	ARMCX6	ENST00000361910	human	ensembl	69_37n	-1	known	missense	c.287	p.R96Q	0.104	NULL	pfam_ARM-rpt_dom	-	no_errors	ARMCX6	HGNC	ENSG00000198960	117	1	0.85	70	24	25.26	-	-	-	T	100871324	C	T	100871324	3	4	275	1	0	0	0	0	1	0	0	0	967	884	31	1	619	1	ARMCX6	23	100871324	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	62491	100871324	54399236	5166	30853										
ARMCX3	0	genome.wustl.edu	37	chrX	100880573	100880573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaatcagcgcaggcttaaaGtatacatgaatcaagtgtgt	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	100880573	100880573	G	T	SNP	ARMCX3	ENST00000341189	human	ensembl	69_37n	1	known	missense	c.604	p.V202L	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX3	HGNC	ENSG00000102401	391	0	0	255	69	21.3	-	-	-	T	100880573	G	T	100880573	3	4	275	1	0	0	0	0	1	0	0	0	965	1029	36	4	606	4	ARMCX3	23	100880573	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	9249	100880573	54389987	5167	30854										
ZMAT1	0	genome.wustl.edu	37	chrX	101139682	101139682	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccatctttctgaaacaagtCttggcctctagtcctctggc	7	13	5	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101139682	101139682	C	A	SNP	ZMAT1	ENST00000372782	human	ensembl	69_37n	-1	known	missense	c.717	p.K239N	0.000	NULL	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	413	0	0	315	52	14.17	-	-	-	A	101139682	C	A	101139682	3	1	275	1	0	0	0	0	1	0	0	0	17787	912	32	2	1203	2	ZMAT1	23	101139682	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	259109	101139682	54130878	5168	30855										
TCEAL2	0	genome.wustl.edu	37	chrX	101381908	101381908	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agccagaagtagcttgtattCtggaagacaagaagttagaa	11	5	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101381908	101381908	C	A	SNP	TCEAL2	ENST00000329035	human	ensembl	69_37n	1	known	missense	c.106	p.L36M	0.000	NULL	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905	535	1	0.19	368	47	11.33	-	-	-	A	101381908	C	A	101381908	3	1	275	1	0	0	0	0	1	0	0	0	15766	912	32	2	108	2	TCEAL2	23	101381908	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	242226	101381908	53888652	5169	30856										
TCEAL6	0	genome.wustl.edu	37	chrX	101396101	101396101	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccttcggacttgccctgcTtttcctggcttcccttatct	6	16	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101396101	101396101	T	G	SNP	TCEAL6	ENST00000372773	human	ensembl	69_37n	-1	known	missense	c.203	p.K68T	0.434	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071	600	0	0	225	81	26.47	-	-	-	G	101396101	T	G	101396101	3	3	275	1	0	0	0	0	1	0	0	0	15770	1609	56	5	352	5	TCEAL6	23	101396101	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	14193	101396101	53874459	5170	30857										
TCEAL6	0	genome.wustl.edu	37	chrX	101396223	101396223	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcttcctcgtctgactttccTtcatcatcaggctctacttc	4	15	6	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101396223	101396223	T	C	SNP	TCEAL6	ENST00000372773	human	ensembl	69_37n	-1	known	silent	c.81	p.E27	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071	1129	2	0.18	534	83	13.45	-	-	-	C	101396223	T	C	101396223	2	2	275	1	0	0	0	0	0	0	0	1	15770	1606	56	5		5	TCEAL6	23	101396223	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	122	101396223	53874337	5171	30858										
ARMCX5	0	genome.wustl.edu	37	chrX	101858439	101858439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttatgttttaaaagtgttttCgtgtttgtctaaaaatcacg	7	4	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101858439	101858439	C	T	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	missense	c.1370	p.S457L	0.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	220	0	0	105	34	24.46	-	-	-	T	101858439	C	T	101858439	3	4	275	1	0	0	0	0	1	0	0	0	966	893	31	1	1372	1	ARMCX5	23	101858439	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	462216	101858439	53412121	5172	30859										
GPRASP1	0	genome.wustl.edu	37	chrX	101908854	101908854	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttgtaccatgactggggcaGagattgagtctggtgcccag	14	9	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101908854	101908854	G	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	nonsense	c.13	p.E5*	0.385	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	262	1	0.38	127	51	28.65	-	-	-	T	101908854	G	T	101908854	4	4	275	1	0	0	0	0	0	1	0	0	6773	943	33	2	15	2	GPRASP1	23	101908854	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	50415	101908854	53361706	5173	30860										
GPRASP1	0	genome.wustl.edu	37	chrX	101911385	101911385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attattgggtcctggttctgGgaagaagaggccagtccgga	15	7	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	101911385	101911385	G	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	missense	c.2544	p.W848C	0.998	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	250	0	0	129	58	31.02	-	-	-	T	101911385	G	T	101911385	3	4	275	1	0	0	0	0	1	0	0	0	6773	1241	43	4	2546	4	GPRASP1	23	101911385	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2531	101911385	53359175	5174	30861										
BHLHB9	0	genome.wustl.edu	37	chrX	102005078	102005078	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgaaatgagaaaaaagacTgtaattactctgaatcctcc	6	9	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	102005078	102005078	T	C	SNP	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	silent	c.1155	p.T385	0.594	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	208	0	0	110	41	27.15	-	-	-	C	102005078	T	C	102005078	2	2	275	1	0	0	0	0	0	0	0	1	1425	1567	55	5		5	BHLHB9	23	102005078	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	93693	102005078	53265482	5175	30862										
NXF3	0	genome.wustl.edu	37	chrX	102334988	102334988	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcaacatctcagatccaaaGaagcttccctggaataaaga	6	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	102334988	102334988	G	T	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.1005	p.F335L	0.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	245	0	0	294	35	10.64	-	-	-	T	102334988	G	T	102334988	3	4	275	1	0	0	0	0	1	0	0	0	10858	933	33	2	622	2	NXF3	23	102334988	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	329910	102334988	52935572	5176	30863										
TMEM31	0	genome.wustl.edu	37	chrX	102968726	102968726	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aatttcttctggtgtttaaaGaagccttccatgacatatcc	6	9	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	102968726	102968726	G	T	SNP	TMEM31	ENST00000319560	human	ensembl	69_37n	1	known	nonsense	c.307	p.E103*	0.916	NULL	NULL	-	no_errors	TMEM31	HGNC	ENSG00000179363	836	0	0	582	92	13.63	-	-	-	T	102968726	G	T	102968726	4	4	275	1	0	0	0	0	0	1	0	0	16250	943	33	2	313	2	TMEM31	23	102968726	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	633738	102968726	52301834	5177	30864										
RAB9B	0	genome.wustl.edu	37	chrX	103080350	103080350	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgtctaccttgttacccAgaactacaaaggggaaatgc	8	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	103080350	103080350	A	C	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.365	p.L122R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	194	0	0	77	30	27.78	-	-	-	C	103080350	A	C	103080350	3	2	275	1	0	0	0	0	1	0	0	0	13042	188	7	5	244	5	RAB9B	23	103080350	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	111624	103080350	52190210	5178	30865										
RAB9B	0	genome.wustl.edu	37	chrX	103080650	103080650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttacgtaacggttcataagcGaacttttcccaactccacca	5	13	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	103080650	103080650	G	A	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.65	p.S22L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	174	0	0	113	21	15.67	-	-	-	A	103080650	G	A	103080650	3	1	275	1	0	0	0	0	1	0	0	0	13042	1059	37	1	544	1	RAB9B	23	103080650	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	300	103080650	52189910	5179	30866										
SERPINA7	0	genome.wustl.edu	37	chrX	105280612	105280612	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agggtcttgacatcattcaaGaactttgccagtggtttcag	10	8	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	105280612	105280612	G	T	SNP	SERPINA7	ENST00000327674	human	ensembl	69_37n	-1	known	missense	c.438	p.F146L	0.902	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA7	HGNC	ENSG00000123561	365	0	0	228	28	10.94	-	-	-	T	105280612	G	T	105280612	3	4	275	1	0	0	0	0	1	0	0	0	14182	933	33	2	825	2	SERPINA7	23	105280612	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2199962	105280612	49989948	5180	30867										
MORC4	0	genome.wustl.edu	37	chrX	106185940	106185940	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaataaggcactgggttccaGgattcaactgcttttcgtct	10	9	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	106185940	106185940	G	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	silent	c.2181	p.S727	0.982	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	695	2	0.29	500	82	14.09	-	-	-	T	106185940	G	T	106185940	2	4	275	1	0	0	0	0	0	0	0	1	9776	987	35	4		4	MORC4	23	106185940	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	905328	106185940	49084620	5181	30868										
MORC4	0	genome.wustl.edu	37	chrX	106224595	106224595	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccttaaagaatattctgtttCtggtagctcagaggtaacac	8	8	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	106224595	106224595	C	A	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	nonsense	c.787	p.E263*	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	310	0	0	167	50	23.04	-	-	-	A	106224595	C	A	106224595	4	1	275	1	0	0	0	0	0	1	0	0	9776	922	32	2	2074	2	MORC4	23	106224595	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	38655	106224595	49045965	5182	30869										
TSC22D3	0	genome.wustl.edu	37	chrX	107018505	107018505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcttttcctgcagctgccGaaagttgctcactgtagggc	11	12	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107018505	107018505	G	A	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	missense	c.145	p.R49W	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	121	1	0.82	53	14	20.29	-	-	-	A	107018505	G	A	107018505	3	1	275	1	0	0	0	0	1	0	0	0	16705	1057	37	1	595	1	TSC22D3	23	107018505	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	793910	107018505	48252055	5183	30870										
VSIG1	0	genome.wustl.edu	37	chrX	107301373	107301373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccaccactgtggcctcccGagaacagctttccatccagt	7	17	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107301373	107301373	G	A	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.155	p.R52Q	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	648	1	0.15	467	90	16.07	-	-	-	A	107301373	G	A	107301373	3	1	275	1	0	0	0	0	1	0	0	0	17319	1058	37	1	161	1	VSIG1	23	107301373	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	282868	107301373	47969187	5184	30871										
VSIG1	0	genome.wustl.edu	37	chrX	107315908	107315908	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctttgtcattgccttacagtGaaaccttctaagcccctttg	6	12	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107315908	107315908	G	T	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	silent	c.522	p.V174	0.994	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	494	0	0	413	132	24.22	-	-	-	T	107315908	G	T	107315908	2	4	275	1	0	0	0	0	0	0	0	1	17319	1304	45	2		2	VSIG1	23	107315908	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14535	107315908	47954652	5185	30872										
VSIG1	0	genome.wustl.edu	37	chrX	107319421	107319421	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaagcaaaggcaaaagaaaGaaattctaagaccatcgcgg	9	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107319421	107319421	G	T	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.911	p.R304I	0.106	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	716	0	0	490	175	26.32	-	-	-	T	107319421	G	T	107319421	3	4	275	1	0	0	0	0	1	0	0	0	17319	942	33	2	937	2	VSIG1	23	107319421	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	3513	107319421	47951139	5186	30873										
COL4A6	0	genome.wustl.edu	37	chrX	107433721	107433721	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tagagtttcagtctcaaattCtggacctttgggtaaaaaaa	8	6	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107433721	107433721	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	nonsense	c.1330	p.E444*	0.030	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	262	0	0	185	30	13.95	-	-	-	A	107433721	C	A	107433721	4	1	275	1	0	0	0	0	0	1	0	0	3725	922	32	2	3849	2	COL4A6	23	107433721	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	114300	107433721	47836839	5187	30874										
COL4A5	0	genome.wustl.edu	37	chrX	107929281	107929281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtccaactggccctccaggaGatcctggacgcaatggactc	11	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107929281	107929281	G	A	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.4237	p.D1413N	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	205	0	0	116	65	35.71	-	-	-	A	107929281	G	A	107929281	3	1	275	1	0	0	0	0	1	0	0	0	3724	942	33	2	4412	2	COL4A5	23	107929281	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	495560	107929281	47341279	5188	30875										
IRS4	0	genome.wustl.edu	37	chrX	107978378	107978378	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaggctcgctgggtgttacGaagcgcctggtgaaaagcat	14	9	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	107978378	107978378	G	A	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	silent	c.1197	p.F399	0.225	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	33	0	0	13	7	35	-	-	-	A	107978378	G	A	107978378	2	1	275	1	0	0	0	0	0	0	0	1	7896	1049	37	1		1	IRS4	23	107978378	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	49097	107978378	47292182	5189	30876										
ACSL4	0	genome.wustl.edu	37	chrX	108926712	108926712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagcacatttagcttaagttTcatagtggaaaggcttctaa	9	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	108926712	108926712	T	C	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	missense	c.4	p.K2E	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	115	0	0	88	27	23.48	-	-	-	C	108926712	T	C	108926712	3	2	275	1	0	0	0	0	1	0	0	0	179	1792	62	5	2187	5	ACSL4	23	108926712	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	948334	108926712	46343848	5190	30877										
RGAG1	0	genome.wustl.edu	37	chrX	109694563	109694563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattacagatgaagacaccGaagcaatgtccaaagtgcta	8	8	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	109694563	109694563	G	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.718	p.E240K	0.996	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	205	0	0	90	37	29.13	-	-	-	A	109694563	G	A	109694563	3	1	275	1	0	0	0	0	1	0	0	0	13357	1059	37	1	720	1	RGAG1	23	109694563	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	767851	109694563	45575997	5191	30878										
PAK3	0	genome.wustl.edu	37	chrX	110439164	110439164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggatggatggctctgttaAattgagtaggtattttggtt	14	3	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	110439164	110439164	A	C	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	missense	c.1313	p.K438T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	377	1	0.26	250	46	15.54	-	-	-	C	110439164	A	C	110439164	3	2	275	1	0	0	0	0	1	0	0	0	11475	14	1	5	1363	5	PAK3	23	110439164	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	744601	110439164	44831396	5192	30879										
ALG13	0	genome.wustl.edu	37	chrX	111003084	111003084	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctgccttccggttgtgccaGattattcctgtgttcccccc	8	16	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	111003084	111003084	G	T	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	missense	c.2722	p.D908Y	1.000	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	313	1	0.32	199	33	14.22	-	-	-	T	111003084	G	T	111003084	3	4	275	1	0	0	0	0	1	0	0	0	515	942	33	2	3519	2	ALG13	23	111003084	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	563920	111003084	44267476	5193	30880										
ZCCHC16	0	genome.wustl.edu	37	chrX	111698508	111698508	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	accaatcagagtggtcagttCgaaaaggcactagctgatcc	10	10	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	111698508	111698508	C	T	SNP	ZCCHC16	ENST00000340433	human	ensembl	69_37n	1	known	silent	c.552	p.F184	0.001	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823	240	1	0.41	138	29	17.37	-	-	-	T	111698508	C	T	111698508	2	4	275	1	0	0	0	0	0	0	0	1	17680	883	31	1		1	ZCCHC16	23	111698508	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	695424	111698508	43572052	5194	30881										
ZCCHC16	0	genome.wustl.edu	37	chrX	111698553	111698553	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggatgaagagagtgtcacTgatatgatggacaatcttcc	11	7	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	111698553	111698553	T	G	SNP	ZCCHC16	ENST00000340433	human	ensembl	69_37n	1	known	silent	c.597	p.T199	0.013	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823	305	0	0	157	54	25.59	-	-	-	G	111698553	T	G	111698553	2	3	275	1	0	0	0	0	0	0	0	1	17680	1567	55	5		5	ZCCHC16	23	111698553	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	45	111698553	43572007	5195	30882										
LRCH2	0	genome.wustl.edu	37	chrX	114347861	114347861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caccaactttcacaagtcctCgttcttccaaaatatgatga	4	12	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	114347861	114347861	C	T	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.2216	p.R739Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	309	0	0	134	29	17.79	-	-	-	T	114347861	C	T	114347861	3	4	275	1	0	0	0	0	1	0	0	0	8999	884	31	1	85	1	LRCH2	23	114347861	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2649308	114347861	40922699	5196	30883										
LUZP4	0	genome.wustl.edu	37	chrX	114524333	114524333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgatgcagggaagatggcttCgtttcggaagctaacgcttt	13	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	114524333	114524333	C	T	SNP	LUZP4	ENST00000371920	human	ensembl	69_37n	1	known	missense	c.8	p.S3L	0.039	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021	208	0	0	158	23	12.71	-	-	-	T	114524333	C	T	114524333	3	4	275	1	0	0	0	0	1	0	0	0	9154	893	31	1	10	1	LUZP4	23	114524333	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	176472	114524333	40746227	5197	30884										
AGTR2	0	genome.wustl.edu	37	chrX	115303625	115303625	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	catctctggcaacaatgagtCtaccttgaactgttcacaga	7	11	3	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	115303625	115303625	C	A	SNP	AGTR2	ENST00000371906	human	ensembl	69_37n	1	known	missense	c.92	p.S31Y	0.002	prints_ATII_AT2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor,prints_Chemokine_rcpt	-	no_errors	AGTR2	HGNC	ENSG00000180772	304	0	0	149	22	12.87	-	-	-	A	115303625	C	A	115303625	3	1	275	1	0	0	0	0	1	0	0	0	402	913	32	2	94	2	AGTR2	23	115303625	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	779292	115303625	39966935	5198	30885										
KLHL13	0	genome.wustl.edu	37	chrX	117044002	117044002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gttaacgtatttatccacttCggttagattgtaggtgttgg	11	5	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117044002	117044002	C	T	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.637	p.E213K	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	136	0	0	94	22	18.97	-	-	-	T	117044002	C	T	117044002	3	4	275	1	0	0	0	0	1	0	0	0	8422	893	31	1	1351	1	KLHL13	23	117044002	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1740377	117044002	38226558	5199	30886										
WDR44	0	genome.wustl.edu	37	chrX	117570720	117570720	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcagattatggcacatttCtcgaagagaatgcctttgct	9	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117570720	117570720	C	A	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1907	p.S636Y	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	401	0	0	277	117	29.7	-	-	-	A	117570720	C	A	117570720	3	1	275	1	0	0	0	0	1	0	0	0	17393	913	32	2	1961	2	WDR44	23	117570720	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	526718	117570720	37699840	5200	30887										
WDR44	0	genome.wustl.edu	37	chrX	117575415	117575415	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaaaagtggctttgtggaatGaagtagatggtcagacaaaa	12	3	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117575415	117575415	G	T	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	nonsense	c.2059	p.E687*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	386	0	0	310	115	27	-	-	-	T	117575415	G	T	117575415	4	4	275	1	0	0	0	0	0	1	0	0	17393	1291	45	2	2117	2	WDR44	23	117575415	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	4695	117575415	37695145	5201	30888										
DOCK11	0	genome.wustl.edu	37	chrX	117732035	117732035	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggtagatggtgcaaagcctTtgttgaagattaaaagccac	12	6	0	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117732035	117732035	T	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.2428	p.L810	0.998	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	384	1	0.26	237	88	27.08	-	-	-	C	117732035	T	C	117732035	2	2	275	1	0	0	0	0	0	0	0	1	4721	1838	64	5		5	DOCK11	23	117732035	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	156620	117732035	37538525	5202	30889										
DOCK11	0	genome.wustl.edu	37	chrX	117752646	117752646	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acagctatctctgttataaaGaatcttttgataaaacatgc	5	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117752646	117752646	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.3426	p.K1142N	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	153	0	0	110	19	14.73	-	-	-	T	117752646	G	T	117752646	3	4	275	1	0	0	0	0	1	0	0	0	4721	933	33	2	3548	2	DOCK11	23	117752646	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	20611	117752646	37517914	5203	30890										
DOCK11	0	genome.wustl.edu	37	chrX	117782984	117782984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggttttaaagtgctgcacatCgaagattagctcaaccagga	10	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	117782984	117782984	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.4475	p.S1492L	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	245	0	0	164	24	12.77	-	-	-	T	117782984	C	T	117782984	3	4	275	1	0	0	0	0	1	0	0	0	4721	893	31	1	4637	1	DOCK11	23	117782984	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	30338	117782984	37487576	5204	30891										
LONRF3	0	genome.wustl.edu	37	chrX	118151790	118151790	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagcctgctgttgatcacaGagagaaattgagtagaaaga	11	6	2	6			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118151790	118151790	G	A	SNP	LONRF3	ENST00000472173	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	LONRF3	HGNC	ENSG00000175556	33	0	0	21	4	16	-	-	-	A	118151790	G	A	118151790	1	1	275	0	1	0	0	0	0	0	0	0	8962	957	33	2		2	LONRF3	23	118151790	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	368806	118151790	37118770	5205	30892										
KIAA1210	0	genome.wustl.edu	37	chrX	118220836	118220836	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attaccatcaccactctcaaGatcttctttcttagagtaaa	3	11	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118220836	118220836	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.4357	p.L1453I	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	292	0	0	166	26	13.54	-	-	-	T	118220836	G	T	118220836	3	4	275	1	0	0	0	0	1	0	0	0	8266	942	33	2	788	2	KIAA1210	23	118220836	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	69046	118220836	37049724	5206	30893										
KIAA1210	0	genome.wustl.edu	37	chrX	118222906	118222906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgaaaaaggcttctgggagGcagagtcttggcataaacat	12	7	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118222906	118222906	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.2287	p.P763T	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	66	0	0	28	7	20	-	-	-	T	118222906	G	T	118222906	3	4	275	1	0	0	0	0	1	0	0	0	8266	1203	42	4	2858	4	KIAA1210	23	118222906	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2070	118222906	37047654	5207	30894										
KIAA1210	0	genome.wustl.edu	37	chrX	118239003	118239003	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagccttcttttgtggattCttaggtgactcatcatcgag	9	8	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118239003	118239003	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1020	p.K340N	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	195	1	0.51	179	27	13.11	-	-	-	A	118239003	C	A	118239003	3	1	275	1	0	0	0	0	1	0	0	0	8266	912	32	2	4141	2	KIAA1210	23	118239003	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16097	118239003	37031557	5208	30895										
PGRMC1	0	genome.wustl.edu	37	chrX	118377133	118377133	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcaagtatcatcacgtgggCaaactgctgaaggaggggga	15	7	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118377133	118377133	C	A	SNP	PGRMC1	ENST00000217971	human	ensembl	69_37n	1	known	silent	c.504	p.G168	0.998	pfam_Cyt_B5,superfamily_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5	-	no_errors	PGRMC1	HGNC	ENSG00000101856	453	0	0	184	54	22.69	-	-	-	A	118377133	C	A	118377133	2	1	275	1	0	0	0	0	0	0	0	1	11880	697	25	4		4	PGRMC1	23	118377133	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	138130	118377133	36893427	5209	30896										
SLC25A43	0	genome.wustl.edu	37	chrX	118585980	118585980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtttcctgtcaggctcagagCccctacctcccacacagtgg	9	16	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118585980	118585980	C	T	SNP	SLC25A43	ENST00000336249	human	ensembl	69_37n	1	known	missense	c.526	p.P176S	0.073	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713	100	0	0	85	24	22.02	-	-	-	T	118585980	C	T	118585980	3	4	275	1	0	0	0	0	1	0	0	0	14597	738	26	4	713	4	SLC25A43	23	118585980	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	208847	118585980	36684580	5210	30897										
CXorf56	0	genome.wustl.edu	37	chrX	118675341	118675341	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttgcgctccagctgtttttCaatcactttggcattctgtg	8	10	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118675341	118675341	C	A	SNP	CXorf56	ENST00000371594	human	ensembl	69_37n	-1	known	nonsense	c.556	p.E186*	1.000	NULL	NULL	-	no_errors	CXorf56	HGNC	ENSG00000018610	222	0	0	156	36	18.65	-	-	-	A	118675341	C	A	118675341	4	1	275	1	0	0	0	0	0	1	0	0	4143	835	29	2	120	2	CXorf56	23	118675341	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	89361	118675341	36595219	5211	30898										
UPF3B	0	genome.wustl.edu	37	chrX	118971734	118971734	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cagcaccttgtttcttattcGatctctcttgaccacttctt	4	13	4	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118971734	118971734	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	nonsense	c.1288	p.R430*	1.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	629	0	0	508	68	11.79	-	-	-	A	118971734	G	A	118971734	4	1	275	1	0	0	0	0	0	1	0	0	17103	1066	37	1	171	1	UPF3B	23	118971734	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	296393	118971734	36298826	5212	30899										
UPF3B	0	genome.wustl.edu	37	chrX	118979168	118979168	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agctatactgtaccatcatcGatagtcccgactttggtatc	7	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	118979168	118979168	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	silent	c.462	p.I154	0.998	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	385	0	0	210	101	32.48	-	-	-	A	118979168	G	A	118979168	2	1	275	1	0	0	0	0	0	0	0	1	17103	1048	37	1		1	UPF3B	23	118979168	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	7434	118979168	36291392	5213	30900										
ZBTB33	0	genome.wustl.edu	37	chrX	119388943	119388943	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtgtttggcctgtggcaaatCtttcatcaactatcagttta	8	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	119388943	119388943	C	A	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	missense	c.1673	p.S558Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	157	0	0	119	41	25.62	-	-	-	A	119388943	C	A	119388943	3	1	275	1	0	0	0	0	1	0	0	0	17632	913	32	2	1675	2	ZBTB33	23	119388943	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	409775	119388943	35881617	5214	30901										
LAMP2	0	genome.wustl.edu	37	chrX	119573089	119573089	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aacgataatcaagcctgaaaGaccagcaccaactataattg	6	10	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	119573089	119573089	G	T	SNP	LAMP2	ENST00000371335	human	ensembl	69_37n	-1	known	missense	c.1153	p.L385I	1.000	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	299	0	0	159	20	11.17	-	-	-	T	119573089	G	T	119573089	3	4	275	1	0	0	0	0	1	0	0	0	8672	942	33	2	374	2	LAMP2	23	119573089	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	184146	119573089	35697471	5215	30902										
LAMP2	0	genome.wustl.edu	37	chrX	119581881	119581881	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctttatcacacaggaactCtaaaacaagcgaaaagggac	8	9	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	119581881	119581881	C	A	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	splice_site	c.557-1	e5-1	0.999	-	-	-	no_errors	LAMP2	HGNC	ENSG00000005893	627	0	0	662	158	19.24	-	-	-	A	119581881	C	A	119581881	5	1	275	1	0	0	0	0	0	0	1	0	8672	927	32	2	987	2	LAMP2	23	119581881	Splice_Site	SNP	C	TCGA-AN-A046-01A-21W-A050-09	8792	119581881	35688679	5216	30903										
MCTS1	0	genome.wustl.edu	37	chrX	119739328	119739328	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tcagttattaagggtattaaGaatcaattgatagagcaatt	8	3	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	119739328	119739328	G	T	SNP	MCTS1	ENST00000371315	human	ensembl	69_37n	1	known	missense	c.81	p.K27N	1.000	pirsf_Transl_RNA-bd_prd	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	-	no_errors	MCTS1	HGNC	ENSG00000232119	136	0	0	86	13	13.13	-	-	-	T	119739328	G	T	119739328	3	4	275	1	0	0	0	0	1	0	0	0	9473	933	33	2	102	2	MCTS1	23	119739328	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	157447	119739328	35531232	5217	30904										
C1GALT1C1	0	genome.wustl.edu	37	chrX	119760860	119760860	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgcgctcatcctctgaaatTttcaagatatcttctttgtt	5	9	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	119760860	119760860	T	G	SNP	C1GALT1C1	ENST00000304661	human	ensembl	69_37n	-1	known	missense	c.162	p.K54N	1.000	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155	167	0	0	82	24	22.64	-	-	-	G	119760860	T	G	119760860	3	3	275	1	0	0	0	0	1	0	0	0	1972	1838	64	5	798	5	C1GALT1C1	23	119760860	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	21532	119760860	35509700	5218	30905										
GRIA3	0	genome.wustl.edu	37	chrX	122387423	122387423	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcacctgctctgctctttaGatattcatgtaattgtgttc	8	9	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	122387423	122387423	G	T	SNP	GRIA3	ENST00000479118	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.545	-	-	-	no_errors	GRIA3	HGNC	ENSG00000125675	92	0	0	65	30	31.58	-	-	-	T	122387423	G	T	122387423	1	4	275	0	1	0	0	0	0	0	0	0	6820	957	33	2		2	GRIA3	23	122387423	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2626563	122387423	32883137	5219	30906										
GRIA3	0	genome.wustl.edu	37	chrX	122460032	122460032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agcgatacttgattgactgcGaagtcgaaaggattaacaca	10	7	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	122460032	122460032	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.664	p.E222K	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	342	0	0	334	38	10.22	-	-	-	A	122460032	G	A	122460032	3	1	275	1	0	0	0	0	1	0	0	0	6820	1059	37	1	678	1	GRIA3	23	122460032	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	72609	122460032	32810528	5220	30907										
THOC2	0	genome.wustl.edu	37	chrX	122758014	122758014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atccagttgcccgtaatatgGtaaggaatcctggatagttt	10	7	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	122758014	122758014	G	A	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.3215	p.T1072I	1.000	pfam_THO_THOC2_C	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	430	0	0	305	93	23.31	-	-	-	A	122758014	G	A	122758014	3	1	275	1	0	0	0	0	1	0	0	0	15960	1261	44	4	1614	4	THOC2	23	122758014	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	297982	122758014	32512546	5221	30908										
STAG2	0	genome.wustl.edu	37	chrX	123164893	123164893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acctccttctggtccaaaccGaatgaatggtcatcaccaac	6	14	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	123164893	123164893	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.206	p.R69Q	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	522	0	0	285	119	29.46	-	-	-	A	123164893	G	A	123164893	3	1	275	1	0	0	0	0	1	0	0	0	15334	1058	37	1	216	1	STAG2	23	123164893	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	406879	123164893	32105667	5222	30909										
STAG2	0	genome.wustl.edu	37	chrX	123179106	123179106	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	attggcgtgttagtacggcaAtgtcaatatagtatcatata	9	5	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	123179106	123179106	A	G	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	silent	c.555	p.Q185	0.993	pfam_STAG,superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	309	0	0	178	32	15.24	-	-	-	G	123179106	A	G	123179106	2	3	275	1	0	0	0	0	0	0	0	1	15334	98	4	5		5	STAG2	23	123179106	Silent	SNP	A	TCGA-AN-A046-01A-21W-A050-09	14213	123179106	32091454	5223	30910										
ODZ1	0	genome.wustl.edu	37	chrX	123805646	123805646	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttgcatacagctctccttcaActggttgcaactgccaagtc	7	13	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	123805646	123805646	A	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.1055	p.V352D	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	274	0	0	218	39	15.12	-	-	-	T	123805646	A	T	123805646	3	4	275	1	0	0	0	0	1	0	0	0	10907	43	2	5	7251	5	ODZ1	23	123805646	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	626540	123805646	31464914	5224	30911										
ELF4	0	genome.wustl.edu	37	chrX	129200983	129200983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgagcctgatctctcaggaGctccctcagggtctcttcag	10	13	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129200983	129200983	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1705	p.L569F	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	68	0	0	25	6	19.35	-	-	-	A	129200983	G	A	129200983	3	1	275	1	0	0	0	0	1	0	0	0	5093	971	34	4	290	4	ELF4	23	129200983	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	5395337	129200983	26069577	5225	30912										
SLC25A14	0	genome.wustl.edu	37	chrX	129483415	129483415	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atgaggtgcctgagaatggaGgagagtcactgcaaagacaa	14	6	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129483415	129483415	G	T	SNP	SLC25A14	ENST00000467346	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078	155	0	0	100	51	33.77	-	-	-	T	129483415	G	T	129483415	1	4	275	0	1	0	0	0	0	0	0	0	14565	1015	35	4		4	SLC25A14	23	129483415	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	282432	129483415	25787145	5226	30913										
SLC25A14	0	genome.wustl.edu	37	chrX	129499489	129499489	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcagggagtgaaagtggggtCgatctacttaaacttttcct	12	7	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129499489	129499489	C	T	SNP	SLC25A14	ENST00000465988	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078	193	0	0	186	24	11.32	-	-	-	T	129499489	C	T	129499489	1	4	275	0	1	0	0	0	0	0	0	0	14565	899	31	1		1	SLC25A14	23	129499489	RNA	SNP	C	TCGA-AN-A046-01A-21W-A050-09	16074	129499489	25771071	5227	30914										
GPR119	0	genome.wustl.edu	37	chrX	129518472	129518472	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gacaggaactttccctgggcCtctctgggccacaattcctg	10	14	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129518472	129518472	C	A	SNP	GPR119	ENST00000276218	human	ensembl	69_37n	-1	known	missense	c.950	p.R317M	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR119	HGNC	ENSG00000147262	120	0	0	52	33	38.82	-	-	-	A	129518472	C	A	129518472	3	1	275	1	0	0	0	0	1	0	0	0	6684	681	24	4	61	4	GPR119	23	129518472	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	18983	129518472	25752088	5228	30915										
RBMX2	0	genome.wustl.edu	37	chrX	129536314	129536314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ataaggtgtcctggcactccGagtacaaggacagcgcctgg	13	11	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129536314	129536314	G	A	SNP	RBMX2	ENST00000305536	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597	121	1	0.82	52	25	32.47	-	-	-	A	129536314	G	A	129536314	3	1	275	1	0	0	0	0	1	0	0	0	13235	1059	37	1	97	1	RBMX2	23	129536314	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	17842	129536314	25734246	5229	30916										
RBMX2	0	genome.wustl.edu	37	chrX	129543276	129543276	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgtgcgggacaagaaaacTgggaaatccaaaggattctg	12	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	129543276	129543276	T	G	SNP	RBMX2	ENST00000305536	human	ensembl	69_37n	1	known	silent	c.219	p.T73	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597	145	0	0	104	18	14.75	-	-	-	G	129543276	T	G	129543276	2	3	275	1	0	0	0	0	0	0	0	1	13235	1567	55	5		5	RBMX2	23	129543276	Silent	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6962	129543276	25727284	5230	30917										
ARHGAP36	0	genome.wustl.edu	37	chrX	130217158	130217158	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gctctgcctattgaccgtccGaacaccttggataagtggtt	10	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	130217158	130217158	G	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	silent	c.273	p.P91	0.991	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	430	0	0	220	35	13.73	-	-	-	A	130217158	G	A	130217158	2	1	275	1	0	0	0	0	0	0	0	1	885	1045	37	1		1	ARHGAP36	23	130217158	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	673882	130217158	25053402	5231	30918										
IGSF1	0	genome.wustl.edu	37	chrX	130407801	130407801	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cgggcagttccacagagattCtctgagaggttgatgaagga	14	7	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	130407801	130407801	C	A	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3995	p.R1332I	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	870	1	0.11	481	57	10.59	-	-	-	A	130407801	C	A	130407801	3	1	275	1	0	0	0	0	1	0	0	0	7650	913	32	2	34	2	IGSF1	23	130407801	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	190643	130407801	24862759	5232	30919										
IGSF1	0	genome.wustl.edu	37	chrX	130410079	130410079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgagttccctgagacactccGaaactgtaagggaacatggg	12	9	0	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	130410079	130410079	G	A	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2767	p.R923W	0.974	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	258	1	0.39	167	31	15.58	-	-	-	A	130410079	G	A	130410079	3	1	275	1	0	0	0	0	1	0	0	0	7650	1057	37	1	1282	1	IGSF1	23	130410079	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2278	130410079	24860481	5233	30920										
IGSF1	0	genome.wustl.edu	37	chrX	130416513	130416513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tatagatgccagtatcactgTaggttacattgttgaggaag	11	5	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	130416513	130416513	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.1151	p.Y384C	0.032	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	184	0	0	151	54	26.34	-	-	-	C	130416513	T	C	130416513	3	2	275	1	0	0	0	0	1	0	0	0	7650	1638	57	5	2930	5	IGSF1	23	130416513	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	6434	130416513	24854047	5234	30921										
MBNL3	0	genome.wustl.edu	37	chrX	131573583	131573583	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cctctctgaaattctctacaGacttctaaagtcagccactt	4	13	4	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	131573583	131573583	G	T	SNP	MBNL3	ENST00000370853	human	ensembl	69_37n	-1	known	silent	c.57	p.V19	0.993	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770	151	0	0	109	18	14.17	-	-	-	T	131573583	G	T	131573583	2	4	275	1	0	0	0	0	0	0	0	1	9426	929	33	2		2	MBNL3	23	131573583	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1157070	131573583	23696977	5235	30922										
MBNL3	0	genome.wustl.edu	37	chrX	131573612	131573612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtcagccacttggtatcacGaatcagggcaacattgacag	10	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	131573612	131573612	G	A	SNP	MBNL3	ENST00000370853	human	ensembl	69_37n	-1	known	missense	c.28	p.R10C	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770	138	0	0	103	13	11.02	-	-	-	A	131573612	G	A	131573612	3	1	275	1	0	0	0	0	1	0	0	0	9426	1058	37	1	1160	1	MBNL3	23	131573612	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	29	131573612	23696948	5236	30923										
USP26	0	genome.wustl.edu	37	chrX	132161376	132161376	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggaggccgtggcatattttCtctggaaataattcaaaaaa	10	6	2	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	132161376	132161376	C	T	SNP	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	silent	c.873	p.E291	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	42	0	0	32	8	19.51	-	-	-	T	132161376	C	T	132161376	2	4	275	1	0	0	0	0	0	0	0	1	17154	912	32	2		2	USP26	23	132161376	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	587764	132161376	23109184	5237	30924										
USP26	0	genome.wustl.edu	37	chrX	132161848	132161848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacttgatttctcatcaactTtgtggaatgaagttttgttg	8	5	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	132161848	132161848	T	G	SNP	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	missense	c.401	p.K134T	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	142	0	0	121	20	14.18	-	-	-	G	132161848	T	G	132161848	3	3	275	1	0	0	0	0	1	0	0	0	17154	1841	64	5	2343	5	USP26	23	132161848	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	472	132161848	23108712	5238	30925										
GPC3	0	genome.wustl.edu	37	chrX	132887640	132887640	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacaagttcttcaagggacaGaatgtattctctccagtact	7	10	3	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	132887640	132887640	G	T	SNP	GPC3	ENST00000394299	human	ensembl	69_37n	-1	known	missense	c.901	p.L301M	0.011	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257	938	1	0.11	681	113	14.23	-	-	-	T	132887640	G	T	132887640	3	4	275	1	0	0	0	0	1	0	0	0	6649	933	33	2	938	2	GPC3	23	132887640	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	725792	132887640	22382920	5239	30926										
CCDC160	0	genome.wustl.edu	37	chrX	133379011	133379011	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agtttcaggaagaaagtaaaTttaagaggaaaaaatatatt	8	1	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	133379011	133379011	T	A	SNP	CCDC160	ENST00000370809	human	ensembl	69_37n	1	known	missense	c.181	p.F61I	0.005	NULL	NULL	-	no_errors	CCDC160	HGNC	ENSG00000203952	107	0	0	37	8	17.78	-	-	-	A	133379011	T	A	133379011	3	1	275	1	0	0	0	0	1	0	0	0	2818	1493	52	5	183	5	CCDC160	23	133379011	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	491371	133379011	21891549	5240	30927										
FAM122B	0	genome.wustl.edu	37	chrX	133915917	133915917	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggtagtgccttggaagagtCtcttgggctgactttctgtc	13	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	133915917	133915917	C	T	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	missense	c.590	p.R197K	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	369	1	0.27	234	31	11.65	-	-	-	T	133915917	C	T	133915917	3	4	275	1	0	0	0	0	1	0	0	0	5460	913	32	2	292	2	FAM122B	23	133915917	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	536906	133915917	21354643	5241	30928										
DDX26B	0	genome.wustl.edu	37	chrX	134683699	134683699	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acattggccaattccagaatCtttttggccagatcagaatt	7	9	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	134683699	134683699	C	A	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.875	p.S292Y	1.000	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	431	0	0	386	57	12.87	-	-	-	A	134683699	C	A	134683699	3	1	275	1	0	0	0	0	1	0	0	0	4384	913	32	2	901	2	DDX26B	23	134683699	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	767782	134683699	20586861	5242	30929										
DDX26B	0	genome.wustl.edu	37	chrX	134685926	134685926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaattttttttagcctccacGaacatctcatcctgttgtga	5	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	134685926	134685926	G	A	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.914	p.R305Q	1.000	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	339	0	0	210	85	28.72	-	-	-	A	134685926	G	A	134685926	3	1	275	1	0	0	0	0	1	0	0	0	4384	1058	37	1	944	1	DDX26B	23	134685926	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2227	134685926	20584634	5243	30930										
DDX26B	0	genome.wustl.edu	37	chrX	134713933	134713933	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcatttgtaggaggagccaaAaactgcagtctctccgtaga	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	134713933	134713933	A	C	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.2229	p.K743N	0.003	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	249	0	0	165	51	23.61	-	-	-	C	134713933	A	C	134713933	3	2	275	1	0	0	0	0	1	0	0	0	4384	11	1	5	2287	5	DDX26B	23	134713933	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	28007	134713933	20556627	5244	30931										
SAGE1	0	genome.wustl.edu	37	chrX	134993748	134993748	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tggattccagatgctactgtCattcacgatatccaggagga	10	9	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	134993748	134993748	C	A	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	silent	c.2157	p.V719	0.000	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	77	0	0	53	23	30.26	-	-	-	A	134993748	C	A	134993748	2	1	275	1	0	0	0	0	0	0	0	1	13895	813	29	2		2	SAGE1	23	134993748	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	279815	134993748	20276812	5245	30932										
SAGE1	0	genome.wustl.edu	37	chrX	134994097	134994097	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atcaattaatgaaagaagttCgaaggtttgggcaaagtaag	11	3	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	134994097	134994097	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	nonsense	c.2506	p.R836*	0.993	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	29	0	0	22	9	29.03	-	-	-	T	134994097	C	T	134994097	4	4	275	1	0	0	0	0	0	1	0	0	13895	876	31	1	2572	1	SAGE1	23	134994097	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	349	134994097	20276463	5246	30933										
FHL1	0	genome.wustl.edu	37	chrX	135290060	135290060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcttccctaaaggggaggaCttctactgcgtgacttgcca	10	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135290060	135290060	C	A	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	1	known	missense	c.441	p.D147E	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	183	0	0	155	20	11.43	-	-	-	A	135290060	C	A	135290060	3	1	275	1	0	0	0	0	1	0	0	0	5924	564	20	4	568	4	FHL1	23	135290060	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	295963	135290060	19980500	5247	30934										
GPR112	0	genome.wustl.edu	37	chrX	135426899	135426899	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttccatgaaaaaaacgaaatCtccatcttcagaaagcacaa	4	10	3	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135426899	135426899	C	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.1034	p.S345Y	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	1069	0	0	539	216	28.57	-	-	-	A	135426899	C	A	135426899	3	1	275	1	0	0	0	0	1	0	0	0	6679	913	32	2	1044	2	GPR112	23	135426899	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	136839	135426899	19843661	5248	30935										
GPR112	0	genome.wustl.edu	37	chrX	135431992	135431992	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aggtgtcaaaatcaacatttCtgacatctgacatgatatca	6	8	5	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135431992	135431992	C	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.6127	p.L2043M	0.011	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	395	0	0	207	41	16.53	-	-	-	A	135431992	C	A	135431992	3	1	275	1	0	0	0	0	1	0	0	0	6679	912	32	2	6137	2	GPR112	23	135431992	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	5093	135431992	19838568	5249	30936										
GPR112	0	genome.wustl.edu	37	chrX	135482172	135482172	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tacttcctgcttgtttctttTacttggatgggcctggaggc	11	9	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135482172	135482172	T	G	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.8472	p.F2824L	0.989	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	379	0	0	305	42	12.1	-	-	-	G	135482172	T	G	135482172	3	3	275	1	0	0	0	0	1	0	0	0	6679	1751	61	5	8542	5	GPR112	23	135482172	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	50180	135482172	19788388	5250	30937										
GPR112	0	genome.wustl.edu	37	chrX	135496377	135496377	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caggagggactaaagaaaatCtttgagcacaaactgttgac	10	7	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135496377	135496377	C	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.9096	p.I3032	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	135	0	0	101	22	17.89	-	-	-	A	135496377	C	A	135496377	2	1	275	1	0	0	0	0	0	0	0	1	6679	903	32	2		2	GPR112	23	135496377	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	14205	135496377	19774183	5251	30938										
HTATSF1	0	genome.wustl.edu	37	chrX	135593995	135593995	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gatgctgacgaaaagttgttCgaagatgatgattccaatga	11	5	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135593995	135593995	C	T	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	silent	c.2091	p.F697	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	1135	1	0.09	993	160	13.86	-	-	-	T	135593995	C	T	135593995	2	4	275	1	0	0	0	0	0	0	0	1	7487	883	31	1		1	HTATSF1	23	135593995	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	97618	135593995	19676565	5252	30939										
ARHGEF6	0	genome.wustl.edu	37	chrX	135761740	135761740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtctaagtggaggtgcaggtCgtagacaacttaaactccac	11	9	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135761740	135761740	C	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.1784	p.R595Q	0.998	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	438	1	0.23	283	90	24.13	-	-	-	T	135761740	C	T	135761740	3	4	275	1	0	0	0	0	1	0	0	0	912	884	31	1	574	1	ARHGEF6	23	135761740	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	167745	135761740	19508820	5253	30940										
ARHGEF6	0	genome.wustl.edu	37	chrX	135767928	135767928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcccatgcctgaataggttCggacagtatctgtaactcca	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135767928	135767928	C	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.1300	p.E434K	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	221	0	0	259	47	15.31	-	-	-	T	135767928	C	T	135767928	3	4	275	1	0	0	0	0	1	0	0	0	912	893	31	1	1074	1	ARHGEF6	23	135767928	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	6188	135767928	19502632	5254	30941										
RBMX	0	genome.wustl.edu	37	chrX	135957681	135957681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggacaaataaacatctctaCgagagggcagcggttccctt	11	10	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	135957681	135957681	C	T	SNP	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	missense	c.605	p.R202H	1.000	pfam_RBM1CTR	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	227	0	0	195	28	12.5	-	-	-	T	135957681	C	T	135957681	3	4	275	1	0	0	0	0	1	0	0	0	13234	536	19	1	641	1	RBMX	23	135957681	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	189753	135957681	19312879	5255	30942										
GPR101	0	genome.wustl.edu	37	chrX	136112553	136112553	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cactggggtacctgggtttcGacatccacccacacggccag	11	15	0	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	136112553	136112553	G	A	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	silent	c.1281	p.V427	0.950	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	289	1	0.34	251	30	10.64	-	-	-	A	136112553	G	A	136112553	2	1	275	1	0	0	0	0	0	0	0	1	6672	1045	37	1		1	GPR101	23	136112553	Silent	SNP	G	TCGA-AN-A046-01A-21W-A050-09	154872	136112553	19158007	5256	30943										
MCF2	0	genome.wustl.edu	37	chrX	138687895	138687895	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	caaaacagtatacagttctcGaacataaactctctcagtct	4	11	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	138687895	138687895	G	A	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	nonsense	c.1969	p.R657*	0.994	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	748	0	0	401	58	12.64	-	-	-	A	138687895	G	A	138687895	4	1	275	1	0	0	0	0	0	1	0	0	9449	1066	37	1	1323	1	MCF2	23	138687895	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2575342	138687895	16582665	5257	30944										
MCF2	0	genome.wustl.edu	37	chrX	138699719	138699719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggtcctgctgagttgtatccGttttgcttttatctcattaa	8	8	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	138699719	138699719	G	A	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	missense	c.1387	p.R463W	0.249	smart_Spectrin/alpha-actinin	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	627	0	0	403	128	24.02	-	-	-	A	138699719	G	A	138699719	3	1	275	1	0	0	0	0	1	0	0	0	9449	1144	40	1	1977	1	MCF2	23	138699719	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	11824	138699719	16570841	5258	30945										
ATP11C	0	genome.wustl.edu	37	chrX	138844149	138844149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagtactgtacaaggtgtgCtattctcacataatatagat	8	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	138844149	138844149	C	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.2620	p.A874S	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	347	0	0	199	48	19.43	-	-	-	A	138844149	C	A	138844149	3	1	275	1	0	0	0	0	1	0	0	0	1125	797	28	4	877	4	ATP11C	23	138844149	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	144430	138844149	16426411	5259	30946										
MAGEC1	0	genome.wustl.edu	37	chrX	140993954	140993954	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tttccagagtttctctgagaGaactcagagtacttttgagg	10	7	2	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	140993954	140993954	G	T	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.764	p.R255I	0.004	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	132	0	0	78	22	22	-	-	-	T	140993954	G	T	140993954	3	4	275	1	0	0	0	0	1	0	0	0	9251	942	33	2	770	2	MAGEC1	23	140993954	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2149805	140993954	14276606	5260	30947										
SLITRK4	0	genome.wustl.edu	37	chrX	142716965	142716965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtcaggattccccaggccttCgtgcttcactgtgggtttct	11	12	3	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	142716965	142716965	C	T	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.1960	p.E654K	0.999	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	102	0	0	58	26	30.95	-	-	-	T	142716965	C	T	142716965	3	4	275	1	0	0	0	0	1	0	0	0	14834	893	31	1	557	1	SLITRK4	23	142716965	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1723011	142716965	12553595	5261	30948										
SLITRK4	0	genome.wustl.edu	37	chrX	142718210	142718210	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gggagtttcacagatagcttCtcctatgtaaatgttatatg	9	6	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	142718210	142718210	C	A	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	nonsense	c.715	p.E239*	0.998	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	91	0	0	55	11	16.67	-	-	-	A	142718210	C	A	142718210	4	1	275	1	0	0	0	0	0	1	0	0	14834	922	32	2	1802	2	SLITRK4	23	142718210	Nonsense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	1245	142718210	12552350	5262	30949										
SPANXN2	0	genome.wustl.edu	37	chrX	142803695	142803695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acaatcttacctcatcatttTttttgttattggattcacag	4	8	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	142803695	142803695	T	G	SNP	SPANXN2	ENST00000370498	human	ensembl	69_37n	-1	known	missense	c.68	p.K23T	0.002	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924	382	0	0	255	76	22.96	-	-	-	G	142803695	T	G	142803695	3	3	275	1	0	0	0	0	1	0	0	0	15082	1841	64	5	482	5	SPANXN2	23	142803695	Missense_Mutation	SNP	T	TCGA-AN-A046-01A-21W-A050-09	85485	142803695	12466865	5263	30950										
SLITRK2	0	genome.wustl.edu	37	chrX	144905545	144905545	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gagaacccctgggactgtacCtgtgacatcatggggctgaa	13	10	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	144905545	144905545	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	silent	c.1602	p.T534	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	75	0	0	41	9	18	-	-	-	A	144905545	C	A	144905545	2	1	275	1	0	0	0	0	0	0	0	1	14832	668	24	4		4	SLITRK2	23	144905545	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	2101850	144905545	10365015	5264	30951										
SLITRK2	0	genome.wustl.edu	37	chrX	144906449	144906449	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaccggactacctcgaagttCtggaaaaacaaactgcaatc	7	11	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	144906449	144906449	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.2506	p.L836M	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	48	0	0	32	7	17.95	-	-	-	A	144906449	C	A	144906449	3	1	275	1	0	0	0	0	1	0	0	0	14832	912	32	2	2508	2	SLITRK2	23	144906449	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	904	144906449	10364111	5265	30952										
AFF2	0	genome.wustl.edu	37	chrX	147733533	147733533	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	atatcagtcactatgaacaaGaccgtagtgcacttaaaaaa	6	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	147733533	147733533	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.61	p.D21Y	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	534	0	0	358	49	12.04	-	-	-	T	147733533	G	T	147733533	3	4	275	1	0	0	0	0	1	0	0	0	357	942	33	2	67	2	AFF2	23	147733533	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	2827084	147733533	7537027	5266	30953										
AFF2	0	genome.wustl.edu	37	chrX	148059971	148059971	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgaagtactccagatcactgAtggaatattttaaggtaatg	9	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	148059971	148059971	A	G	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.3556	p.M1186V	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	411	0	0	294	35	10.64	-	-	-	G	148059971	A	G	148059971	3	3	275	1	0	0	0	0	1	0	0	0	357	333	12	5	3681	5	AFF2	23	148059971	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	326438	148059971	7210589	5267	30954										
TMEM185A	0	genome.wustl.edu	37	chrX	148690404	148690404	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggcatgaagaccaggagccaGaaatggcttcctctctcgat	11	11	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	148690404	148690404	G	T	SNP	TMEM185A	ENST00000316916	human	ensembl	69_37n	-1	known	missense	c.333	p.F111L	1.000	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM185A	HGNC	ENSG00000155984	216	0	0	185	29	13.55	-	-	-	T	148690404	G	T	148690404	3	4	275	1	0	0	0	0	1	0	0	0	16202	933	33	2	739	2	TMEM185A	23	148690404	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	630433	148690404	6580156	5268	30955										
MTM1	0	genome.wustl.edu	37	chrX	149764986	149764986	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcgagatggagtcaatcgaGatctcactgaggctgttcct	11	10	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	149764986	149764986	G	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.88	p.D30Y	0.396	smart_GRAM	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	502	1	0.2	248	38	13.29	-	-	-	T	149764986	G	T	149764986	3	4	275	1	0	0	0	0	1	0	0	0	10009	942	33	2	94	2	MTM1	23	149764986	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	1074582	149764986	5505574	5269	30956										
MTM1	0	genome.wustl.edu	37	chrX	149765019	149765019	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctgttcctcgacttccaggaGaaacactaatcactggtaag	8	11	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	149765019	149765019	G	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	nonsense	c.121	p.E41*	0.998	pfam_GRAM,smart_GRAM	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	356	0	0	163	61	27.23	-	-	-	T	149765019	G	T	149765019	4	4	275	1	0	0	0	0	0	1	0	0	10009	943	33	2	127	2	MTM1	23	149765019	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	33	149765019	5505541	5270	30957										
MTM1	0	genome.wustl.edu	37	chrX	149814260	149814260	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	aaagatgatgagaaatatctCgatgttatcagggagactaa	10	4	2	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	149814260	149814260	C	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	silent	c.783	p.L261	0.012	pfam_Myotub-related	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	633	0	0	302	105	25.8	-	-	-	T	149814260	C	T	149814260	2	4	275	1	0	0	0	0	0	0	0	1	10009	871	31	1		1	MTM1	23	149814260	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	49241	149814260	5456300	5271	30958										
MTM1	0	genome.wustl.edu	37	chrX	149828868	149828868	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctacagcttttgaattcaatGaacaatttttgattataatt	4	5	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	149828868	149828868	G	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	nonsense	c.1378	p.E460*	1.000	smart_Tyr_Pase_cat	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	351	0	0	218	41	15.83	-	-	-	T	149828868	G	T	149828868	4	4	275	1	0	0	0	0	0	1	0	0	10009	1291	45	2	1424	2	MTM1	23	149828868	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	14608	149828868	5441692	5272	30959										
CD99L2	0	genome.wustl.edu	37	chrX	149984799	149984799	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gtggacatggtctcacatgtGacctggtgattagtgaacct	12	8	1	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	149984799	149984799	G	T	SNP	CD99L2	ENST00000491877	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CD99L2	HGNC	ENSG00000102181	40	0	0	30	26	46.43	-	-	-	T	149984799	G	T	149984799	1	4	275	0	1	0	0	0	0	0	0	0	3080	1305	45	2		2	CD99L2	23	149984799	RNA	SNP	G	TCGA-AN-A046-01A-21W-A050-09	155931	149984799	5285761	5273	30960										
HMGB3	0	genome.wustl.edu	37	chrX	150154162	150154162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agagaagaacataagaagaaAaacccagaggtccctgtcaa	9	8	1	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	150154162	150154162	A	C	SNP	HMGB3	ENST00000325307	human	ensembl	69_37n	1	known	missense	c.90	p.K30N	0.997	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB3	HGNC	ENSG00000029993	222	0	0	189	45	19.23	-	-	-	C	150154162	A	C	150154162	3	2	275	1	0	0	0	0	1	0	0	0	7278	11	1	5	92	5	HMGB3	23	150154162	Missense_Mutation	SNP	A	TCGA-AN-A046-01A-21W-A050-09	169363	150154162	5116398	5274	30961										
CNGA2	0	genome.wustl.edu	37	chrX	150908062	150908062	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gcctggtggggatcatcagaGaatgggccaacaagaatttc	13	8	2	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	150908062	150908062	G	T	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	nonsense	c.232	p.E78*	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	263	0	0	145	61	29.61	-	-	-	T	150908062	G	T	150908062	4	4	275	1	0	0	0	0	0	1	0	0	3627	943	33	2	242	2	CNGA2	23	150908062	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	753900	150908062	4362498	5275	30962										
GABRQ	0	genome.wustl.edu	37	chrX	151821345	151821345	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	acccatgaccatgaagattcCaatgagagcttgagctcgga	10	10	0	5			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	151821345	151821345	C	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	silent	c.1500	p.S500	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	74	0	0	108	17	13.6	-	-	-	A	151821345	C	A	151821345	2	1	275	1	0	0	0	0	0	0	0	1	6224	581	21	4		4	GABRQ	23	151821345	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	913283	151821345	3449215	5276	30963										
CSAG1	0	genome.wustl.edu	37	chrX	151908883	151908883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	gaagatgtccaggaaaccacGagcctccagcccattttcca	8	14	0	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	151908883	151908883	G	A	SNP	CSAG1	ENST00000370287	human	ensembl	69_37n	1	known	missense	c.122	p.R41Q	0.015	NULL	NULL	-	no_errors	CSAG1	HGNC	ENSG00000198930	1080	1	0.09	781	129	14.14	-	-	-	A	151908883	G	A	151908883	3	1	275	1	0	0	0	0	1	0	0	0	3956	1058	37	1	128	1	CSAG1	23	151908883	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	87538	151908883	3361677	5277	30964										
CETN2	0	genome.wustl.edu	37	chrX	151997150	151997150	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ttcagatttttgaacgaaatCttcccagtttcatcatcatc	4	10	5	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	151997150	151997150	C	A	SNP	CETN2	ENST00000370277	human	ensembl	69_37n	-1	known	missense	c.360	p.K120N	0.965	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CETN2	HGNC	ENSG00000147400	226	0	0	169	23	11.98	-	-	-	A	151997150	C	A	151997150	3	1	275	1	0	0	0	0	1	0	0	0	3304	912	32	2	166	2	CETN2	23	151997150	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	88267	151997150	3273410	5278	30965										
ATP2B3	0	genome.wustl.edu	37	chrX	152826285	152826285	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cacggcgagaggaacgtgttCgacggcatcttcagcaaccc	12	13	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	152826285	152826285	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	silent	c.2991	p.F997	0.990	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	323	0	0	153	50	24.39	-	-	-	T	152826285	C	T	152826285	2	4	275	1	0	0	0	0	0	0	0	1	1145	883	31	1		1	ATP2B3	23	152826285	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	829135	152826285	2444275	5279	30966										
FLNA	0	genome.wustl.edu	37	chrX	153585879	153585879	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agaaggggatctcgtcaccaCcgtacttgatgaggatggtg	14	8	2	3			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	153585879	153585879	C	A	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.4868	p.G1623V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	30	0	0	23	8	25.81	-	-	-	A	153585879	C	A	153585879	3	1	275	1	0	0	0	0	1	0	0	0	5979	507	18	4	3155	4	FLNA	23	153585879	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	759594	153585879	1684681	5280	30967										
FLNA	0	genome.wustl.edu	37	chrX	153593613	153593613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ccccaggtccttctgcttcaCgcgctcctctccctctgcca	6	21	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	153593613	153593613	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.1582	p.V528M	0.967	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	16	0	0	6	5	45.45	-	-	-	T	153593613	C	T	153593613	3	4	275	1	0	0	0	0	1	0	0	0	5979	536	19	1	6513	1	FLNA	23	153593613	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	7734	153593613	1676947	5281	30968										
PLXNA3	0	genome.wustl.edu	37	chrX	153689879	153689879	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ctcttcaccctcagcaacatCaatgcccacatccggcgccg	6	19	4	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	153689879	153689879	C	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.1035	p.I345	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	43	0	0	12	5	29.41	-	-	-	A	153689879	C	A	153689879	2	1	275	1	0	0	0	0	0	0	0	1	12195	816	29	2		2	PLXNA3	23	153689879	Silent	SNP	C	TCGA-AN-A046-01A-21W-A050-09	96266	153689879	1580681	5282	30969										
DKC1	0	genome.wustl.edu	37	chrX	153995618	153995618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tccgagtgaggaccatctacGagagcaaaatgattgaatac	10	8	1	4			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	153995618	153995618	G	A	SNP	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	missense	c.601	p.E201K	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_Pseudouridine_synthase-related	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	108	1	0.92	85	11	11.46	-	-	-	A	153995618	G	A	153995618	3	1	275	1	0	0	0	0	1	0	0	0	4578	1059	37	1	627	1	DKC1	23	153995618	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	305739	153995618	1274942	5283	30970										
F8	0	genome.wustl.edu	37	chrX	154132579	154132579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	ggaatatattaccatggaagCgataattctctttaaaagtg	8	5	1	0			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	154132579	154132579	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5807	p.R1936H	0.402	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	266	0	0	162	78	32.23	-	-	-	T	154132579	C	T	154132579	3	4	275	1	0	0	0	0	1	0	0	0	5387	768	27	1	1316	1	F8	23	154132579	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	136961	154132579	1137981	5284	30971										
F8	0	genome.wustl.edu	37	chrX	154133101	154133101	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	cttaccaggtcaacatcagaGaaataagcccaggctttgca	8	11	2	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	154133101	154133101	G	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5571	p.F1857L	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	277	1	0.36	210	47	18.29	-	-	-	T	154133101	G	T	154133101	3	4	275	1	0	0	0	0	1	0	0	0	5387	933	33	2	1556	2	F8	23	154133101	Missense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	522	154133101	1137459	5285	30972										
F8	0	genome.wustl.edu	37	chrX	154156922	154156922	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	tgcagcaataaaatagtgtcGtgttttcttttgaaagctgc	9	6	1	1			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	154156922	154156922	G	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	nonsense	c.5143	p.R1715*	0.592	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	396	0	0	281	45	13.76	-	-	-	A	154156922	G	A	154156922	4	1	275	1	0	0	0	0	0	1	0	0	5387	1153	40	1	1992	1	F8	23	154156922	Nonsense_Mutation	SNP	G	TCGA-AN-A046-01A-21W-A050-09	23821	154156922	1113638	5286	30973										
VAMP7	0	genome.wustl.edu	37	chrX	155119139	155119139	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0449971520789823	237	1	0.507590075828666	0.37251828631139	0.508371138605366	7.2611485032777e-73	7.10140323620559e-70	0	agactgaagccatggcgattCtttttgctgttgttgccagg	12	8	1	2			TCGA-AN-A046-01A-21W-A050-09	TCGA-AN-A046-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7	7fd1a063-e742-4ebc-acbd-c81ba11f1cc3	X	155119139	155119139	C	A	SNP	VAMP7	ENST00000262640	human	ensembl	69_37n	1	known	missense	c.10	p.L4I	1.000	superfamily_Longin-like_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	VAMP7	HGNC	ENSG00000124333	846	0	0	567	81	12.5	-	-	-	A	155119139	C	A	155119139	3	1	275	1	0	0	0	0	1	0	0	0	17214	913	32	2	12	2	VAMP7	23	155119139	Missense_Mutation	SNP	C	TCGA-AN-A046-01A-21W-A050-09	962217	155119139	151421	5287	30974										
GJB3	0	genome.wustl.edu	37	chr1	35251060	35251060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gttgcagcccctcgtcctccGccagccgagcttccacctgc	9	20	0	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	35251060	35251060	G	A	SNP	GJB3	ENST00000373362	human	ensembl	69_37n	1	known	missense	c.697	p.A233T	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910	31	0	0	13	9	32.14	-	-	-	A	35251060	G	A	35251060	3	1	276	1	0	0	0	0	1	0	0	0	6461	1087	38	1	699	1	GJB3	1	35251060	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		35251060	213999561	1	30975										
NCDN	0	genome.wustl.edu	37	chr1	36029024	36029024	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ggtcaccgcaccggggctgaTcaagtgaggggctcgggaga	18	10	2	3			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	36029024	36029024	T	G	SNP	NCDN	ENST00000356090	human	ensembl	69_37n	1	known	missense	c.1607	p.I536S	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129	54	0	0	24	11	31.43	-	-	-	G	36029024	T	G	36029024	3	3	276	1	0	0	0	0	1	0	0	0	10286	1435	50	5	1625	5	NCDN	1	36029024	Missense_Mutation	SNP	T	TCGA-AN-A049-01A-21W-A019-09	777964	36029024	213221597	2	30976										
SYDE2	0	genome.wustl.edu	37	chr1	85656406	85656406	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ttcaagttctcttcccttcaTtgaagacccataggcatttt	5	11	3	2			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	85656406	85656406	T	C	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	missense	c.775	p.M259V	0.065	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	353	0	0	354	168	32.12	-	-	-	C	85656406	T	C	85656406	3	2	276	1	0	0	0	0	1	0	0	0	15528	1493	52	5	2833	5	SYDE2	1	85656406	Missense_Mutation	SNP	T	TCGA-AN-A049-01A-21W-A019-09	49627382	85656406	163594215	3	30977										
TOR1AIP2	0	genome.wustl.edu	37	chr1	179815877	179815877	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ggcctccaaagctggattttTgggcacttgctgggctggag	15	9	0	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	179815877	179815877	T	G	SNP	TOR1AIP2	ENST00000367612	human	ensembl	69_37n	-1	known	missense	c.742	p.K248Q	0.389	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905	158	1	0.62	228	53	18.86	-	-	-	G	179815877	T	G	179815877	3	3	276	1	0	0	0	0	1	0	0	0	16469	1821	63	5	674	5	TOR1AIP2	1	179815877	Missense_Mutation	SNP	T	TCGA-AN-A049-01A-21W-A019-09	94159471	179815877	69434744	4	30978										
CDC42BPA	0	genome.wustl.edu	37	chr1	227288919	227288919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ttctatgctgcatactcctgGtgagtaactaatttgttttt	7	7	1	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	227288919	227288919	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.2023	p.P675S	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	207	0	0	197	163	45.28	-	-	-	A	227288919	G	A	227288919	3	1	276	1	0	0	0	0	1	0	0	0	3101	1261	44	4	3224	4	CDC42BPA	1	227288919	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09	47473042	227288919	21961702	5	30979										
OR13G1	0	genome.wustl.edu	37	chr1	247835571	247835571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	atgtatagctggaagcagggCggatataggtgtagattaca	14	4	0	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	1	247835571	247835571	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.773	p.R258H	0.823	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	275	0	0	126	57	31.15	-	-	-	T	247835571	C	T	247835571	3	4	276	1	0	0	0	0	1	0	0	0	11015	768	27	1	154	1	OR13G1	1	247835571	Missense_Mutation	SNP	C	TCGA-AN-A049-01A-21W-A019-09	20546652	247835571	1415050	6	30980										
FSIP2	0	genome.wustl.edu	37	chr2	186673142	186673142	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	aagttcctcaagcaaagatgAaaaaaacttatcaaagactg							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	2	186673142	186673142	A	-	DEL	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	frame_shift_del	c.19376	p.N6461fs	0.001	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	150	0	0	112	41	26.62	-	-	-	-	186673142	A	-	186673142	7	5	276	1	0	1	0	1	0	0	0	0	6124	246	9	0	19442	0	FSIP2	2	186673142	Frame_Shift_Del	DEL	A	TCGA-AN-A049-01A-21W-A019-09		186673142	56526231	7	30981										
DNPEP	0	genome.wustl.edu	37	chr2	220249154	220249154	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	aagatgaactcatcataggcAccacccaagacctagagagg							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	2	220249154	220249154	A	-	DEL	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	frame_shift_del	c.786	p.A263fs	0.803	pfam_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	35	0	0	11	2	15.38	-	-	-	-	220249154	A	-	220249154	7	5	276	1	0	1	0	1	0	0	0	0	4714	146	6	0	699	0	DNPEP	2	220249154	Frame_Shift_Del	DEL	A	TCGA-AN-A049-01A-21W-A019-09	33576012	220249154	22950219	8	30982										
HYAL2	0	genome.wustl.edu	37	chr3	50355675	50355675	+	Frame_Shift_Del	DEL	T	T	-													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	tatggtcccactggcattgcTcaccactccagcccaagtag							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	50355675	50355675	T	-	DEL	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	frame_shift_del	c.1307	p.E436fs	0.903	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	29	0	0	6	3	33.33	-	-	-	-	50355675	T	-	50355675	7	5	276	1	0	1	0	1	0	0	0	0	7518	1551	54	0	118	0	HYAL2	3	50355675	Frame_Shift_Del	DEL	T	TCGA-AN-A049-01A-21W-A019-09		50355675	147666755	9	30983	253	2								
HYAL2	0	genome.wustl.edu	37	chr3	50355680	50355681	+	Frame_Shift_Ins	INS	-	-	TT													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	cccactggcattgctcaccaINSctccagcccaagtagcactg							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	50355680	50355681	-	TT	INS	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1302_1301	p.S434fs	0.905:0.978	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	28	0	0	6	3	33.33	-	-	-	TT	50355681	-	TT	50355680	7	5	276	1	0	1	1	0	0	0	0	0	7518	156	6	0	123	0	HYAL2	3	50355680	Frame_Shift_Ins	INS	-	TCGA-AN-A049-01A-21W-A019-09	5	50355680	147666750	10	30984	253	2								
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	267	1	0.37	230	323	58.41	-	-	-	G	178952085	A	G	178952085	3	3	276	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A049-01A-21W-A019-09	128596405	178952085	19070345	11	30985										
MAP3K1	0	genome.wustl.edu	37	chr5	56178024	56178027	+	Frame_Shift_Del	DEL	AGAT	AGAT	-													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gtaccagctggcactgcaacAgatgtctctaagcatagact							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	56178024	56178027	AGAT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2997_3000	p.D1000fs	1.000:1.000:1.000:0.958	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	404	0	0	185	72	27.48	-	-	-	-	56178027	AGAT	-	56178024	7	5	276	1	0	1	0	1	0	0	0	0	9314	175	7	0	3051	0	MAP3K1	5	56178024	Frame_Shift_Del	DEL	AGAT	TCGA-AN-A049-01A-21W-A019-09		56178024	124737236	12	30986										
TTC37	0	genome.wustl.edu	37	chr5	94858950	94858950	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ccagctttcaaatagtatagTcctcgcctaagccaggccca	7	14	1	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	94858950	94858950	T	G	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	silent	c.1713	p.G571	0.085	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	589	2	0.34	427	171	28.6	-	-	-	G	94858950	T	G	94858950	2	3	276	1	0	0	0	0	0	0	0	1	16802	1654	58	5		5	TTC37	5	94858950	Silent	SNP	T	TCGA-AN-A049-01A-21W-A019-09	38680926	94858950	86056310	13	30987										
WWC1	0	genome.wustl.edu	37	chr5	167881097	167881097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ctgatatggatgggtacccaGcattaaaggtaggaagggct	14	6	0	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	5	167881097	167881097	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.2650	p.A884T	0.774	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	234	0	0	207	221	51.64	-	-	-	A	167881097	G	A	167881097	3	1	276	1	0	0	0	0	1	0	0	0	17508	971	34	4	2720	4	WWC1	5	167881097	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09	73022147	167881097	13034163	14	30988										
IRF4	0	genome.wustl.edu	37	chr6	397138	397138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	actacatgatgccacccctcGaccgaagctggagggactac	10	14	0	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	6	397138	397138	G	A	SNP	IRF4	ENST00000380956	human	ensembl	69_37n	1	known	missense	c.523	p.D175N	1.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265	124	0	0	45	29	39.19	-	-	-	A	397138	G	A	397138	3	1	276	1	0	0	0	0	1	0	0	0	7886	1058	37	1	537	1	IRF4	6	397138	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		397138	170717929	15	30989										
COL12A1	0	genome.wustl.edu	37	chr6	75884984	75884984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	aagataatttcatagtagacGtcgtagggtcagaaactctt	9	6	3	3			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	6	75884984	75884984	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2480	p.T827M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	212	0	0	157	66	29.6	-	-	-	A	75884984	G	A	75884984	3	1	276	1	0	0	0	0	1	0	0	0	3699	1145	40	1	6927	1	COL12A1	6	75884984	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09	75487846	75884984	95230083	16	30990										
HOXA5	0	genome.wustl.edu	37	chr7	27182916	27182916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	cgggcgagggggccacggcgGagcagggcagcggatcgggc	23	11	0	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	7	27182916	27182916	G	A	SNP	HOXA5	ENST00000222726	human	ensembl	69_37n	-1	known	missense	c.311	p.S104F	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004	15	0	0	7	4	36.36	-	-	-	A	27182916	G	A	27182916	3	1	276	1	0	0	0	0	1	0	0	0	7346	1174	41	2	509	2	HOXA5	7	27182916	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		27182916	131955747	17	30991										
SLC12A9	0	genome.wustl.edu	37	chr7	100457800	100457800	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ttggcaccggccaaggttgtGtcccgagggggaaacccctg	15	12	0	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	7	100457800	100457800	G	C	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	1	known	silent	c.1164	p.V388	0.882	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	107	0	0	30	36	54.55	-	-	-	C	100457800	G	C	100457800	2	2	276	1	0	0	0	0	0	0	0	1	14479	1364	48	4		4	SLC12A9	7	100457800	Silent	SNP	G	TCGA-AN-A049-01A-21W-A019-09	73274884	100457800	58680863	18	30992										
HEY1	0	genome.wustl.edu	37	chr8	80677554	80677554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gaaagagaaggggaaggccgAcagggaggccactgaggaga	19	6	0	3			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	8	80677554	80677554	A	T	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	missense	c.796	p.S266T	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	12	0	0	2	10	83.33	-	-	-	T	80677554	A	T	80677554	3	4	276	1	0	0	0	0	1	0	0	0	7129	275	10	5	134	5	HEY1	8	80677554	Missense_Mutation	SNP	A	TCGA-AN-A049-01A-21W-A019-09		80677554	65686468	19	30993										
ZNF618	0	genome.wustl.edu	37	chr9	116764297	116764297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gtcttacgaatgcggaatctGtggcaagaagtacaagtatt	11	6	2	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	9	116764297	116764297	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	missense	c.455	p.C152Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	86	0	0	43	14	24.56	-	-	-	A	116764297	G	A	116764297	3	1	276	1	0	0	0	0	1	0	0	0	18138	1377	48	4	373	4	ZNF618	9	116764297	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		116764297	24449134	20	30994										
BARHL1	0	genome.wustl.edu	37	chr9	135458232	135458232	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gactccattctctcccaccgCgcgggcagccccgcccttcc	8	22	1	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	9	135458232	135458232	C	T	SNP	BARHL1	ENST00000263610	human	ensembl	69_37n	1	known	silent	c.48	p.R16	0.879	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL1	HGNC	ENSG00000125492	52	0	0	16	6	27.27	-	-	-	T	135458232	C	T	135458232	2	4	276	1	0	0	0	0	0	0	0	1	1317	755	27	1		1	BARHL1	9	135458232	Silent	SNP	C	TCGA-AN-A049-01A-21W-A019-09	18693935	135458232	5755199	21	30995										
OGDHL	0	genome.wustl.edu	37	chr10	50946283	50946283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	tcatctgcaggaacctttcgGgcctcgctgacgagtgctct	11	13	3	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	10	50946283	50946283	G	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.2345	p.P782H	0.994	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	84	0	0	40	18	31.03	-	-	-	T	50946283	G	T	50946283	3	4	276	1	0	0	0	0	1	0	0	0	10913	1232	43	4	711	4	OGDHL	10	50946283	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		50946283	84588464	22	30996										
TCN1	0	genome.wustl.edu	37	chr11	59629105	59629105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gaacagacacaaggccaaaaCgtccaggctgagctggtagt	12	10	0	2			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	11	59629105	59629105	C	T	SNP	TCN1	ENST00000257264	human	ensembl	69_37n	-1	known	missense	c.451	p.V151I	0.002	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827	344	0	0	211	90	29.9	-	-	-	T	59629105	C	T	59629105	3	4	276	1	0	0	0	0	1	0	0	0	15801	536	19	1	874	1	TCN1	11	59629105	Missense_Mutation	SNP	C	TCGA-AN-A049-01A-21W-A019-09		59629105	75377411	23	30997										
KRT2	0	genome.wustl.edu	37	chr12	53042056	53042056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	atgctatccaagtccaggttGcggctgttgtccatggagag	13	9	0	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	53042056	53042056	G	A	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	silent	c.1023	p.R341	0.001	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	340	0	0	259	110	29.81	-	-	-	A	53042056	G	A	53042056	2	1	276	1	0	0	0	0	0	0	0	1	8510	1306	46	4		4	KRT2	12	53042056	Silent	SNP	G	TCGA-AN-A049-01A-21W-A019-09		53042056	80809839	24	30998										
TENC1	0	genome.wustl.edu	37	chr12	53457540	53457540	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ccccctaggatctttggtttCgtggccaagaagccgggaag	13	11	1	1			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	53457540	53457540	C	T	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	silent	c.4134	p.F1378	0.948	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	76	0	0	59	11	15.71	-	-	-	T	53457540	C	T	53457540	2	4	276	1	0	0	0	0	0	0	0	1	15853	883	31	1		1	TENC1	12	53457540	Silent	SNP	C	TCGA-AN-A049-01A-21W-A019-09	415484	53457540	80394355	25	30999										
MDM1	0	genome.wustl.edu	37	chr12	68719294	68719294	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gcctttgatattcagaatttCtcaaggcattatatgaagga	8	6	2	3			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	68719294	68719294	C	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	missense	c.560	p.R187I	1.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	544	1	0.18	365	167	31.39	-	-	-	A	68719294	C	A	68719294	3	1	276	1	0	0	0	0	1	0	0	0	9483	913	32	2	1628	2	MDM1	12	68719294	Missense_Mutation	SNP	C	TCGA-AN-A049-01A-21W-A019-09	15261754	68719294	65132601	26	31000										
OASL	0	genome.wustl.edu	37	chr12	121458644	121458645	+	Frame_Shift_Del	DEL	GT	GT	-													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	tctccagcagatagatgtgaGtgtgggagaagatcccatat							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	12	121458644	121458645	GT	-	DEL	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	frame_shift_del	c.1265_1264	p.T422fs	0.000:0.000	smart_Ubiquitin	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	234	0	0	278	194	41.1	-	-	-	-	121458645	GT	-	121458644	7	5	276	1	0	1	0	1	0	0	0	0	10875	1029	36	0	283	0	OASL	12	121458644	Frame_Shift_Del	DEL	GT	TCGA-AN-A049-01A-21W-A019-09	52739350	121458644	12393251	27	31001										
SIPA1L1	0	genome.wustl.edu	37	chr14	72055691	72055691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ctggagcttccgcagctgccGtggcatccttggtctctgga	13	13	1	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	14	72055691	72055691	G	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.1102	p.V368L	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	538	0	0	234	97	29.31	-	-	-	T	72055691	G	T	72055691	3	4	276	1	0	0	0	0	1	0	0	0	14418	1145	40	3	1104	3	SIPA1L1	14	72055691	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		72055691	35293849	28	31002										
SEPT12	0	genome.wustl.edu	37	chr16	4829718	4829718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gatgccccacttggtcttccGgcccaggacacacctcccgt	9	18	1	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	16	4829718	4829718	G	A	SNP	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	missense	c.796	p.R266W	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	75	0	0	119	25	17.36	-	-	-	A	4829718	G	A	4829718	3	1	276	1	0	0	0	0	1	0	0	0	14150	1115	39	1	292	1	SEPT12	16	4829718	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09		4829718	85525035	29	31003										
SLFN12	0	genome.wustl.edu	37	chr17	33749142	33749142	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	cgctccactctgagtgcacaGacatatccacaaagacttcc	6	15	1	3			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	17	33749142	33749142	G	A	SNP	SLFN12	ENST00000304905	human	ensembl	69_37n	-1	known	silent	c.906	p.V302	0.091	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123	309	0	0	379	187	32.92	-	-	-	A	33749142	G	A	33749142	2	1	276	1	0	0	0	0	0	0	0	1	14823	929	33	2		2	SLFN12	17	33749142	Silent	SNP	G	TCGA-AN-A049-01A-21W-A019-09		33749142	47446068	30	31004										
CD300E	0	genome.wustl.edu	37	chr17	72619828	72619828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ggaatccaagtatatgtaacGgagcctgggtcatccacttt	10	9	1	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	17	72619828	72619828	G	A	SNP	CD300E	ENST00000426295	human	ensembl	69_37n	-1	known	missense	c.56	p.P19L	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300E	HGNC	ENSG00000186407	196	0	0	201	77	27.7	-	-	-	A	72619828	G	A	72619828	3	1	276	1	0	0	0	0	1	0	0	0	3027	1131	39	1		1	CD300E	17	72619828	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09	38870686	72619828	8575382	31	31005										
KLHL15	0	genome.wustl.edu	37	chrX	24024161	24024162	+	Frame_Shift_Ins	INS	-	-	T													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	ccggatattctgaatgatggINStatcggtatgtctccagcgt							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	24024161	24024162	-	T	INS	KLHL15	ENST00000328046	human	ensembl	69_37n	-1	known	frame_shift_ins	c.650_649	p.T217fs	1.000:1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	919	0	0	832	304	26.76	-	-	-	T	24024162	-	T	24024161	7	5	276	1	0	1	1	0	0	0	0	0	8424	1261	44	0	1172	0	KLHL15	23	24024161	Frame_Shift_Ins	INS	-	TCGA-AN-A049-01A-21W-A019-09		24024161	131246399	32	31006										
CUL4B	0	genome.wustl.edu	37	chrX	119678367	119678367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	acagcatgcttaaaaggcttCgaagtaaacttctatcaatt	6	8	2	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	119678367	119678367	C	T	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.1106	p.R369Q	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	229	0	0	296	54	15.43	-	-	-	T	119678367	C	T	119678367	3	4	276	1	0	0	0	0	1	0	0	0	4089	884	31	1	1695	1	CUL4B	23	119678367	Missense_Mutation	SNP	C	TCGA-AN-A049-01A-21W-A019-09	95654206	119678367	35592193	33	31007										
OCRL	0	genome.wustl.edu	37	chrX	128692912	128692912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	aaatacccaatctgggcagcGggagggtctcatcaaacata	10	10	3	0			TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	128692912	128692912	G	A	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.656	p.R219Q	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	593	0	0	437	174	28.48	-	-	-	A	128692912	G	A	128692912	3	1	276	1	0	0	0	0	1	0	0	0	10896	1116	39	1	686	1	OCRL	23	128692912	Missense_Mutation	SNP	G	TCGA-AN-A049-01A-21W-A019-09	9014545	128692912	26577648	34	31008										
PNCK	0	genome.wustl.edu	37	chrX	152936626	152936627	+	Frame_Shift_Ins	INS	-	-	G													0.0294117647058824	1	0.999962424367031	0.567049808429119	0	0.600405679513185	1	1	0	gggtcgctctcgtcgtagaaINSgggggggtacccacacagcc							TCGA-AN-A049-01A-21W-A019-09	TCGA-AN-A049-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1d0c87ef-6840-4051-85d5-7fc2c544578c	0a43cf49-03cc-4aa0-bde2-1107ce131db4	X	152936626	152936627	-	G	INS	PNCK	ENST00000447676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.883_882	p.F294fs	1.000:0.876	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PNCK	HGNC	ENSG00000130822	58	0	0	36	4	10	-	-	-	G	152936627	-	G	152936626	7	5	276	1	0	1	1	0	0	0	0	0	12219	72	3	0	413	0	PNCK	23	152936626	Frame_Shift_Ins	INS	-	TCGA-AN-A049-01A-21W-A019-09	24243714	152936626	2333934	35	31009										
HSPG2	0	genome.wustl.edu	37	chr1	22211641	22211642	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ccggggaggtgtcaccacctINSgggggggcactgaggagacc							TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	1	22211641	22211642	-	G	INS	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1220_1219	p.Q407fs	1.000:0.999	pfam_Ig_I-set,superfamily_LDrepeatLR_classA_rpt,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	16	0	0	14	2	12.5	-	-	-	G	22211642	-	G	22211641	7	5	277	1	0	1	1	0	0	0	0	0	7484	1580	55	0	12303	0	HSPG2	1	22211641	Frame_Shift_Ins	INS	-	TCGA-AN-A04A-01A-21W-A050-09		22211641	227038980	1	31010										
OLFML3	0	genome.wustl.edu	37	chr1	114523968	114523968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	gaggggctgatccccccctaCggcttgacagcagacaccta	11	15	0	3			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	1	114523968	114523968	C	T	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	silent	c.798	p.Y266	0.257	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	100	0	0	64	22	25.58	-	-	-	T	114523968	C	T	114523968	2	4	277	1	0	0	0	0	0	0	0	1	10932	547	19	1		1	OLFML3	1	114523968	Silent	SNP	C	TCGA-AN-A04A-01A-21W-A050-09	92312327	114523968	134726653	2	31011										
ALK	0	genome.wustl.edu	37	chr2	29416321	29416321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ggaagtctcccagttgcaacGttaggtgggacagtacagct	13	9	1	0			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	2	29416321	29416321	G	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	silent	c.4632	p.N1544	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	159	0	0	121	27	18.12	-	-	-	A	29416321	G	A	29416321	2	1	277	1	0	0	0	0	0	0	0	1	525	1136	40	1		1	ALK	2	29416321	Silent	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		29416321	213783052	3	31012										
REG3G	0	genome.wustl.edu	37	chr2	79255029	79255029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	cctccaccatcttaaaccctGgccactgtgggagcctgtca	8	16	2	0			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	2	79255029	79255029	G	T	SNP	REG3G	ENST00000272324	human	ensembl	69_37n	1	known	missense	c.430	p.G144C	0.003	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3G	HGNC	ENSG00000143954	132	0	0	124	30	19.48	-	-	-	T	79255029	G	T	79255029	3	4	277	1	0	0	0	0	1	0	0	0	13296	1348	47	4	444	4	REG3G	2	79255029	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	49838708	79255029	163944344	4	31013										
PSMD14	0	genome.wustl.edu	37	chr2	162175351	162175351	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	agaaatatggacagacttctTagacttggaggaggtatgcc	12	6	1	3			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	2	162175351	162175351	T	G	SNP	PSMD14	ENST00000409682	human	ensembl	69_37n	1	known	silent	c.15	p.L5	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PSMD14	HGNC	ENSG00000115233	497	0	0	244	65	21.04	-	-	-	G	162175351	T	G	162175351	2	3	277	1	0	0	0	0	0	0	0	1	12777	1741	61	5		5	PSMD14	2	162175351	Silent	SNP	T	TCGA-AN-A04A-01A-21W-A050-09	82920322	162175351	81024022	5	31014										
SEMA5B	0	genome.wustl.edu	37	chr3	122629793	122629793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	gtgtggactcctgggactgaCgctggcagtgctggcaagac	16	10	0	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	3	122629793	122629793	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	missense	c.3353	p.R1118H	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	105	0	0	59	17	22.37	-	-	-	T	122629793	C	T	122629793	3	4	277	1	0	0	0	0	1	0	0	0	14126	536	19	1	272	1	SEMA5B	3	122629793	Missense_Mutation	SNP	C	TCGA-AN-A04A-01A-21W-A050-09		122629793	75392637	6	31015										
PIK3CB	0	genome.wustl.edu	37	chr3	138403480	138403480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	cacttactagagttctgagaGgataacacatgggttcaggg	12	7	2	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	3	138403480	138403480	G	A	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.2302	p.L768F	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	104	0	0	56	43	43.43	-	-	-	A	138403480	G	A	138403480	3	1	277	1	0	0	0	0	1	0	0	0	11988	1000	35	4	940	4	PIK3CB	3	138403480	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	15773687	138403480	59618950	7	31016										
KIT	0	genome.wustl.edu	37	chr4	55569972	55569972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	aacgttgactatcagttcagCgagagttaatgattctggag	11	6	3	3			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	4	55569972	55569972	C	T	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.839	p.A280V	0.800	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	169	0	0	91	57	38.51	-	-	-	T	55569972	C	T	55569972	3	4	277	1	0	0	0	0	1	0	0	0	8382	768	27	1	857	1	KIT	4	55569972	Missense_Mutation	SNP	C	TCGA-AN-A04A-01A-21W-A050-09		55569972	135584304	8	31017										
HEATR7B2	0	genome.wustl.edu	37	chr5	41005744	41005744	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ccgtgttgccacactgccatGctcctagaaaatgcacattt	7	13	0	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	5	41005744	41005744	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.3753	p.S1251	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	154	0	0	165	48	22.33	-	-	-	A	41005744	G	A	41005744	2	1	277	1	0	0	0	0	0	0	0	1	7086	1310	46	4		4	HEATR7B2	5	41005744	Silent	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		41005744	139909516	9	31018										
HEATR7B2	0	genome.wustl.edu	37	chr5	41015496	41015496	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ttattaccttagctattttaGaagaaatcttgatctgaacc	5	7	2	4			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	5	41015496	41015496	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.2969	p.S990F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	212	0	0	131	28	17.61	-	-	-	A	41015496	G	A	41015496	3	1	277	1	0	0	0	0	1	0	0	0	7086	942	33	2	1844	2	HEATR7B2	5	41015496	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	9752	41015496	139899764	10	31019										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056019	26056021	+	In_Frame_Del	DEL	TTC	TTC	-													0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	agaagtaggcgttcgcctatTtcttcttgggcgccgccttc							TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	6	26056019	26056021	TTC	-	DEL	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	in_frame_del	c.638_636	p.K213in_frame_del	1.000:1.000:1.000	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	58	0	0	42	14	25	-	-	-	-	26056021	TTC	-	26056019	7	5	277	1	0	1	0	1	0	0	0	0	7175	1841	64	0	7	0	HIST1H1C	6	26056019	In_Frame_Del	DEL	TTC	TCGA-AN-A04A-01A-21W-A050-09		26056019	145059048	11	31020										
TECPR1	0	genome.wustl.edu	37	chr7	97847315	97847315	+	Frame_Shift_Del	DEL	G	G	-													0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	gctcccagctggagccctgcGggtagctgggcgtgatccct							TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	7	97847315	97847315	G	-	DEL	TECPR1	ENST00000379795	human	ensembl	69_37n	-1	known	frame_shift_del	c.3203	p.P1068fs	1.000	pfam_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356	23	0	0	11	2	15.38	-	-	-	-	97847315	G	-	97847315	7	5	277	1	0	1	0	1	0	0	0	0	15838	1116	39	0	312	0	TECPR1	7	97847315	Frame_Shift_Del	DEL	G	TCGA-AN-A04A-01A-21W-A050-09		97847315	61291348	12	31021										
ADAM9	0	genome.wustl.edu	37	chr8	38871610	38871611	+	Frame_Shift_Ins	INS	-	-	C													0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	caaattttaaaacaattataINSatttaaaaatgagttctgta							TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	8	38871610	38871611	-	C	INS	ADAM9	ENST00000481513	human	ensembl	69_37n	1	putative	frame_shift_ins	c.381_382	p.I127fs	0.000:0.000	NULL	pfam_Peptidase_M12B_N	-	no_errors	ADAM9	HGNC	ENSG00000168615	119	0	0	90	11	10.89	-	-	-	C	38871611	-	C	38871610	7	5	277	1	0	1	1	0	0	0	0	0	253	377	13	0		0	ADAM9	8	38871610	Frame_Shift_Ins	INS	-	TCGA-AN-A04A-01A-21W-A050-09		38871610	107492412	13	31022										
SH3GL2	0	genome.wustl.edu	37	chr9	17787384	17787384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ttattctctcctaggcccagCacttggtgaggtcggggagg	14	10	1	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	9	17787384	17787384	C	T	SNP	SH3GL2	ENST00000380607	human	ensembl	69_37n	1	known	missense	c.338	p.A113V	1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295	136	0	0	110	35	24.14	-	-	-	T	17787384	C	T	17787384	3	4	277	1	0	0	0	0	1	0	0	0	14340	710	25	4	356	4	SH3GL2	9	17787384	Missense_Mutation	SNP	C	TCGA-AN-A04A-01A-21W-A050-09		17787384	123426047	14	31023										
OR5R1	0	genome.wustl.edu	37	chr11	56184810	56184810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	tatccaaggctttctttgagGcatctttcacttctttgttc	6	10	4	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	11	56184810	56184810	G	A	SNP	OR5R1	ENST00000312253	human	ensembl	69_37n	-1	known	missense	c.899	p.A300V	0.079	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	186	0	0	127	36	22.09	-	-	-	A	56184810	G	A	56184810	3	1	277	1	0	0	0	0	1	0	0	0	11253	1203	42	4	77	4	OR5R1	11	56184810	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		56184810	78821706	15	31024										
PRKRIR	0	genome.wustl.edu	37	chr11	76062947	76062947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	agatttccttcagttctttaCccctttctttactgttctga	4	11	4	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	11	76062947	76062947	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1247	p.G416D	0.989	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	73	0	0	20	36	64.29	-	-	-	T	76062947	C	T	76062947	3	4	277	1	0	0	0	0	1	0	0	0	12607	507	18	4	1042	4	PRKRIR	11	76062947	Missense_Mutation	SNP	C	TCGA-AN-A04A-01A-21W-A050-09	19878137	76062947	58943569	16	31025										
NCOR2	0	genome.wustl.edu	37	chr12	124841250	124841251	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ggaggccttgatcacctcacINSgggggggcacggggaagggc							TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	12	124841250	124841251	-	G	INS	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3200_3199	p.R1067fs	0.404:0.395	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	18	0	0	15	2	11.76	-	-	-	G	124841251	-	G	124841250	7	5	277	1	0	1	1	0	0	0	0	0	10308	536	19	0	4465	0	NCOR2	12	124841250	Frame_Shift_Ins	INS	-	TCGA-AN-A04A-01A-21W-A050-09		124841250	9010645	17	31026										
DOC2A	0	genome.wustl.edu	37	chr16	30020844	30020844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	agagtgcaggaggcccggtcGtagagaaggtcaaactccag	15	9	1	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	16	30020844	30020844	G	A	SNP	DOC2A	ENST00000350119	human	ensembl	69_37n	-1	known	silent	c.297	p.Y99	0.987	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Doc2	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Doc2,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927	92	0	0	108	14	11.48	-	-	-	A	30020844	G	A	30020844	2	1	277	1	0	0	0	0	0	0	0	1	4718	1140	40	1		1	DOC2A	16	30020844	Silent	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		30020844	60333909	18	31027										
MYH4	0	genome.wustl.edu	37	chr17	10355578	10355578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ctcccgggagaggtcagagcGctgcttctctgctttggccc	13	14	2	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	17	10355578	10355578	G	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.3418	p.R1140C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	111	0	0	39	104	72.73	-	-	-	A	10355578	G	A	10355578	3	1	277	1	0	0	0	0	1	0	0	0	10109	1087	38	1	2457	1	MYH4	17	10355578	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		10355578	70839632	19	31028										
CYP4F2	0	genome.wustl.edu	37	chr19	16003164	16003164	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	aaaatcttcatatagggcttCaggatgttgaaatggaaggc	11	5	3	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	19	16003164	16003164	C	A	SNP	CYP4F2	ENST00000221700	human	ensembl	69_37n	-1	known	silent	c.480	p.L160	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	256	0	0	696	303	30.24	-	-	-	A	16003164	C	A	16003164	2	1	277	1	0	0	0	0	0	0	0	1	4219	813	29	2		2	CYP4F2	19	16003164	Silent	SNP	C	TCGA-AN-A04A-01A-21W-A050-09		16003164	43125819	20	31029										
GGT1	0	genome.wustl.edu	37	chr22	25019807	25019807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	gaagggcctgacgtaccaccGcatcgtagaggctttccggt	13	12	0	2			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	22	25019807	25019807	G	A	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	1	known	missense	c.944	p.R315H	1.000	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	258	0	0	195	45	18.75	-	-	-	A	25019807	G	A	25019807	3	1	277	1	0	0	0	0	1	0	0	0	6413	1087	38	1	970	1	GGT1	22	25019807	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09		25019807	26284759	21	31030										
NPTXR	0	genome.wustl.edu	37	chr22	39219199	39219199	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	taggcagaccataggccatcCcttgtggtccaggcgatgca	12	12	0	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	22	39219199	39219199	C	T	SNP	NPTXR	ENST00000333039	human	ensembl	69_37n	-1	known	silent	c.1167	p.R389	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	107	0	0	51	44	46.32	-	-	-	T	39219199	C	T	39219199	2	4	277	1	0	0	0	0	0	0	0	1	10677	622	22	4		4	NPTXR	22	39219199	Silent	SNP	C	TCGA-AN-A04A-01A-21W-A050-09	14199392	39219199	12085367	22	31031										
MKL1	0	genome.wustl.edu	37	chr22	40825739	40825739	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ggctctcttcagcttcagctGcttggcctggagggatggct	14	11	3	0			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	22	40825739	40825739	G	A	SNP	MKL1	ENST00000355630	human	ensembl	69_37n	-1	known	nonsense	c.172	p.Q58*	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL1	HGNC	ENSG00000196588	82	0	0	73	43	37.07	-	-	-	A	40825739	G	A	40825739	4	1	277	1	0	0	0	0	0	1	0	0	9672	1328	46	4	2659	4	MKL1	22	40825739	Nonsense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	1606540	40825739	10478827	23	31032										
MOV10L1	0	genome.wustl.edu	37	chr22	50555645	50555645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	ttccgatttcctaattgggcGataccttgaagtaaatgtta	8	7	0	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	22	50555645	50555645	G	A	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.1319	p.R440Q	0.997	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	79	0	0	62	14	18.42	-	-	-	A	50555645	G	A	50555645	3	1	277	1	0	0	0	0	1	0	0	0	9791	1058	37	1	1394	1	MOV10L1	22	50555645	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	9729906	50555645	748921	24	31033										
ATRX	0	genome.wustl.edu	37	chrX	76939543	76939543	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	atgcaagatgagccttcttaAtatcagccaacacagactta	6	10	2	3			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	X	76939543	76939543	A	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.1205	p.I402N	0.997	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	152	0	0	182	55	23.21	-	-	-	T	76939543	A	T	76939543	3	4	277	1	0	0	0	0	1	0	0	0	1212	101	4	5	6381	5	ATRX	23	76939543	Missense_Mutation	SNP	A	TCGA-AN-A04A-01A-21W-A050-09		76939543	78331017	25	31034										
NDUFA1	0	genome.wustl.edu	37	chrX	119005896	119005896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	1	0.371696504688832	NA	0.371696504688832	1	1	0	tgtggttcgagattctccccGgactctccgtcatgggcgtg	13	12	3	1			TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e8f250c-6162-4049-8559-5bfdf054b021	2761c6e7-affc-4ffe-a72a-1d1203d574c4	X	119005896	119005896	G	A	SNP	NDUFA1	ENST00000371437	human	ensembl	69_37n	1	known	missense	c.22	p.G8R	0.789	pirsf_NADH_Ub_cplx-1_asu_su-1	pirsf_NADH_Ub_cplx-1_asu_su-1	-	no_errors	NDUFA1	HGNC	ENSG00000125356	82	0	0	107	38	26.21	-	-	-	A	119005896	G	A	119005896	3	1	277	1	0	0	0	0	1	0	0	0	10331	1117	39	1	24	1	NDUFA1	23	119005896	Missense_Mutation	SNP	G	TCGA-AN-A04A-01A-21W-A050-09	42066353	119005896	36264664	26	31035										
AJAP1	0	genome.wustl.edu	37	chr1	4772340	4772340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cgcctcttcgtcctcgtcctCgtcctccgcggtggccggtg	12	18	1	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	4772340	4772340	C	T	SNP	AJAP1	ENST00000378190	human	ensembl	69_37n	1	known	missense	c.410	p.S137L	0.005	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	9	0	0	1	4	80	-	-	-	T	4772340	C	T	4772340	3	4	278	1	0	0	0	0	1	0	0	0	438	893	31	1	416	1	AJAP1	1	4772340	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		4772340	244478281	1	31036										
OXCT2	0	genome.wustl.edu	37	chr1	40236329	40236330	+	In_Frame_Ins	INS	-	-	CCA													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gtctgcccggatggcgcgctINSccaaaaggaagtggtcgccg							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	40236329	40236330	-	CCA	INS	OXCT2	ENST00000327582	human	ensembl	69_37n	-1	known	in_frame_ins	c.599_598	p.200in_frame_insV	0.978:0.997	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754	27	0	0	14	4	22.22	-	-	-	CCA	40236330	-	CCA	40236329	7	5	278	1	0	1	1	0	0	0	0	0	11403	1551	54	0	958	0	OXCT2	1	40236329	In_Frame_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	35463989	40236329	209014292	2	31037										
LRRC41	0	genome.wustl.edu	37	chr1	46744688	46744688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	agaggcgcaggtgaccaaagGctccacggccccagcgctcc	13	16	0	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	46744688	46744688	G	T	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.2288	p.A763D	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	49	0	0	56	9	13.85	-	-	-	T	46744688	G	T	46744688	3	4	278	1	0	0	0	0	1	0	0	0	9065	1203	42	4	154	4	LRRC41	1	46744688	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	6508359	46744688	202505933	3	31038										
COL11A1	0	genome.wustl.edu	37	chr1	103474022	103474022	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	aaatttttattttttacctgAggacctggatcaccactctc	5	10	2	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	103474022	103474022	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	silent	c.1716	p.P572	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	113	0	0	111	33	22.76	-	-	-	C	103474022	A	C	103474022	2	2	278	1	0	0	0	0	0	0	0	1	3697	291	11	5		5	COL11A1	1	103474022	Silent	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	56729334	103474022	145776599	4	31039										
HFE2	0	genome.wustl.edu	37	chr1	145415808	145415808	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gccaccagctcccccatggcGttgggggccaacgctaccgc	12	18	0	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	145415808	145415808	G	A	SNP	HFE2	ENST00000336751	human	ensembl	69_37n	1	known	silent	c.627	p.A209	0.002	pfam_RGM_N	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509	71	0	0	37	11	22.92	-	-	-	A	145415808	G	A	145415808	2	1	278	1	0	0	0	0	0	0	0	1	7133	1132	40	1		1	HFE2	1	145415808	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	41941786	145415808	103834813	5	31040										
SETDB1	0	genome.wustl.edu	37	chr1	150935080	150935080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tagagttactgaaagctctcGaaattacggttacaatcctt	7	8	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	150935080	150935080	G	A	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.3176	p.R1059Q	0.961	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	171	0	0	481	88	15.38	-	-	-	A	150935080	G	A	150935080	3	1	278	1	0	0	0	0	1	0	0	0	14226	1058	37	1	3242	1	SETDB1	1	150935080	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	5519272	150935080	98315541	6	31041										
KPRP	0	genome.wustl.edu	37	chr1	152733639	152733639	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	agtccacaccgcctagacacCgaagctccctactgtggccc	8	18	0	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	1	152733639	152733639	C	G	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	silent	c.1575	p.T525	0.015	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	101	0	0	66	48	42.11	-	-	-	G	152733639	C	G	152733639	2	3	278	1	0	0	0	0	0	0	0	1	8489	639	23	3		3	KPRP	1	152733639	Silent	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	1798559	152733639	96516982	7	31042										
CNTNAP5	0	genome.wustl.edu	37	chr2	125555732	125555732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	acatgtttcaagaaccctatCctgtgaccaagaatataagc	6	10	1	3			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	2	125555732	125555732	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.3049	p.P1017S	0.210	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	463	0	0	233	51	17.96	-	-	-	T	125555732	C	T	125555732	3	4	278	1	0	0	0	0	1	0	0	0	3680	855	30	2	3123	2	CNTNAP5	2	125555732	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		125555732	117643641	8	31043										
LRP1B	0	genome.wustl.edu	37	chr2	141762944	141762944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tcatccaaaagttgattatcGgcacaagcacacacccggcc	7	14	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	2	141762944	141762944	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.2463	p.A821	0.814	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	143	0	0	112	18	13.74	-	-	-	A	141762944	G	A	141762944	2	1	278	1	0	0	0	0	0	0	0	1	9021	1103	39	1		1	LRP1B	2	141762944	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	16207212	141762944	101436429	9	31044										
SUSD5	0	genome.wustl.edu	37	chr3	33249409	33249409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tctccacttcctttgctacaCacagttgttctgaaatagac	5	12	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	3	33249409	33249409	C	T	SNP	SUSD5	ENST00000412539	human	ensembl	69_37n	-1	novel	missense	c.296	p.C99Y	0.998	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	-	pseudogene:no_stop_codon	SUSD5	HGNC	ENSG00000173705	326	0	0	285	188	39.75	-	-	-	T	33249409	C	T	33249409	3	4	278	1	0	0	0	0	1	0	0	0	15502	465	17	4	1601	4	SUSD5	3	33249409	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		33249409	164773021	10	31045										
UROC1	0	genome.wustl.edu	37	chr3	126202222	126202223	+	Frame_Shift_Ins	INS	-	-	C													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctgacttacaccattggagaINScatcccagctgagcatcagc							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	3	126202222	126202223	-	C	INS	UROC1	ENST00000290868	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1880_1879	p.V627fs	1.000:1.000	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	37	0	0	18	17	48.57	-	-	-	C	126202223	-	C	126202222	7	5	278	1	0	1	1	0	0	0	0	0	17125	275	10	0	158	0	UROC1	3	126202222	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	92952813	126202222	71820208	11	31046										
PIK3CA	0	genome.wustl.edu	37	chr3	178937498	178937498	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tttaacagatgacaaactttCtcagtatttaattcagctag	5	7	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	3	178937498	178937498	C	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1886	p.S629C	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	119	0	0	99	106	51.71	-	-	-	G	178937498	C	G	178937498	3	3	278	1	0	0	0	0	1	0	0	0	11987	913	32	2	1928	2	PIK3CA	3	178937498	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	52735276	178937498	19084932	12	31047										
MAP3K13	0	genome.wustl.edu	37	chr3	185146578	185146578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cgtcaccacaacagtgttgaCgagcgtaagtgaggattcca	11	10	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	3	185146578	185146578	C	T	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	missense	c.209	p.T70M	0.998	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	165	0	0	86	48	35.82	-	-	-	T	185146578	C	T	185146578	3	4	278	1	0	0	0	0	1	0	0	0	9318	536	19	1	211	1	MAP3K13	3	185146578	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	6209080	185146578	12875852	13	31048										
TMEM175	0	genome.wustl.edu	37	chr4	947133	947133	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gccatcttctctctcttcttTgtccccttggtgagtgctgg	9	13	4	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	4	947133	947133	T	C	SNP	TMEM175	ENST00000264771	human	ensembl	69_37n	1	known	silent	c.618	p.F206	1.000	NULL	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419	178	0	0	42	25	37.31	-	-	-	C	947133	T	C	947133	2	2	278	1	0	0	0	0	0	0	0	1	16186	1809	63	5		5	TMEM175	4	947133	Silent	SNP	T	TCGA-AN-A04C-01A-21W-A050-09		947133	190207143	14	31049										
POLR2B	0	genome.wustl.edu	37	chr4	57852532	57852532	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ttttacagatatgcaatatgAtgaggatgatgatgaaatca	9	3	1	6			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	4	57852532	57852532	A	T	SNP	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	missense	c.32	p.D11V	1.000	NULL	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	271	0	0	114	22	16.18	-	-	-	T	57852532	A	T	57852532	3	4	278	1	0	0	0	0	1	0	0	0	12289	333	12	5	38	5	POLR2B	4	57852532	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	56905399	57852532	133301744	15	31050										
NDST3	0	genome.wustl.edu	37	chr4	119176789	119176789	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tactatcgagatcacaacgtGgaactctcaaagctgctgca	8	11	2	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	4	119176789	119176789	G	T	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	silent	c.2544	p.V848	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	139	0	0	79	23	22.55	-	-	-	T	119176789	G	T	119176789	2	4	278	1	0	0	0	0	0	0	0	1	10329	1335	47	4		4	NDST3	4	119176789	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	61324257	119176789	71977487	16	31051										
PAPD7	0	genome.wustl.edu	37	chr5	6739853	6739853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ttcttctgtcagcgacatagAcctggtggtcttcgggaaat	11	9	4	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	5	6739853	6739853	A	G	SNP	PAPD7	ENST00000230859	human	ensembl	69_37n	1	known	missense	c.146	p.D49G	1.000	pfam_Nucleotidyltransferase	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941	59	0	0	45	9	16.67	-	-	-	G	6739853	A	G	6739853	3	3	278	1	0	0	0	0	1	0	0	0	11499	275	10	5	156	5	PAPD7	5	6739853	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09		6739853	174175407	17	31052										
DAP	0	genome.wustl.edu	37	chr5	10681194	10681195	+	In_Frame_Ins	INS	-	-	CTC													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cgtggctgctggatgtgctgINSggttcttggggaaggatgct							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	5	10681194	10681195	-	CTC	INS	DAP	ENST00000230895	human	ensembl	69_37n	-1	known	in_frame_ins	c.283_282	p.94in_frame_insE	0.997:0.801	NULL	NULL	-	no_errors	DAP	HGNC	ENSG00000112977	222	0	0	103	43	29.45	-	-	-	CTC	10681195	-	CTC	10681194	7	5	278	1	0	1	1	0	0	0	0	0	4265	1357	47	0	29	0	DAP	5	10681194	In_Frame_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	3941341	10681194	170234066	18	31053										
KDM3B	0	genome.wustl.edu	37	chr5	137721990	137721990	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tcccccagataaaccgcaacAttcgctttgccacttacacc	4	17	0	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	5	137721990	137721990	A	T	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.1060	p.I354F	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	222	0	0	203	32	13.62	-	-	-	T	137721990	A	T	137721990	3	4	278	1	0	0	0	0	1	0	0	0	8181	217	8	5	1086	5	KDM3B	5	137721990	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	127040796	137721990	43193270	19	31054										
PCDHB10	0	genome.wustl.edu	37	chr5	140573649	140573649	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tccctggtctccatcaacgcGgacaacggccacctgttcgc	9	17	2	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	5	140573649	140573649	G	T	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	silent	c.1524	p.A508	0.743	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	86	0	0	33	19	35.85	-	-	-	T	140573649	G	T	140573649	2	4	278	1	0	0	0	0	0	0	0	1	11608	1103	39	3		3	PCDHB10	5	140573649	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	2851659	140573649	40341611	20	31055										
ZNF292	0	genome.wustl.edu	37	chr6	87965899	87965899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	acttaattcatctggagattCcattcagccttctgaagtga	7	9	4	3			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	6	87965899	87965899	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.2552	p.S851F	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	93	0	0	106	12	10.17	-	-	-	T	87965899	C	T	87965899	3	4	278	1	0	0	0	0	1	0	0	0	17922	855	30	2	2582	2	ZNF292	6	87965899	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		87965899	83149168	21	31056										
ENPP1	0	genome.wustl.edu	37	chr6	132201019	132201019	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	attttcatcctgtgacccaaGagaagattattaagcatgaa	7	7	1	4			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	6	132201019	132201019	G	C	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	splice_site	c.1946-1	e20-1	1.000	-	-	-	no_errors	ENPP1	HGNC	ENSG00000197594	164	0	0	137	352	71.84	-	-	-	C	132201019	G	C	132201019	5	2	278	1	0	0	0	0	0	0	1	0	5166	956	33	2	2023	2	ENPP1	6	132201019	Splice_Site	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	44235120	132201019	38914048	22	31057										
TNPO3	0	genome.wustl.edu	37	chr7	128610253	128610253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	acttcagccacatctggtagGgtatagggggggaggcaaaa	15	7	2	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	7	128610253	128610253	G	A	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	silent	c.2649	p.T883	0.991	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	114	0	0	48	45	48.39	-	-	-	A	128610253	G	A	128610253	2	1	278	1	0	0	0	0	0	0	0	1	16432	1219	43	4		4	TNPO3	7	128610253	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		128610253	30528410	23	31058										
GIMAP1	0	genome.wustl.edu	37	chr7	150417637	150417637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cgagctggtggccgagtgcgGgggccgggtctgtgcctttg	20	10	1	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	7	150417637	150417637	G	T	SNP	GIMAP1	ENST00000307194	human	ensembl	69_37n	1	known	missense	c.545	p.G182V	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP1	HGNC	ENSG00000213203	42	0	0	41	11	20.75	-	-	-	T	150417637	G	T	150417637	3	4	278	1	0	0	0	0	1	0	0	0	6431	1232	43	4	551	4	GIMAP1	7	150417637	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	21807384	150417637	8721026	24	31059										
PNMA2	0	genome.wustl.edu	37	chr8	26365956	26365956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tttttctagaaacaggttcaAtctttcaagaaactcagtgt	6	7	5	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	8	26365956	26365956	A	G	SNP	PNMA2	ENST00000522362	human	ensembl	69_37n	-1	known	silent	c.316	p.L106	0.999	NULL	pfam_Retrotrans_gag	-	no_errors	PNMA2	HGNC	ENSG00000240694	158	0	0	56	13	18.84	-	-	-	G	26365956	A	G	26365956	2	3	278	1	0	0	0	0	0	0	0	1	12228	98	4	5		5	PNMA2	8	26365956	Silent	SNP	A	TCGA-AN-A04C-01A-21W-A050-09		26365956	119998066	25	31060										
TEX15	0	genome.wustl.edu	37	chr8	30695197	30695197	+	Frame_Shift_Del	DEL	G	G	-													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	aggatttttgggtgggatctGgggaatttttaagaaatttc							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	8	30695197	30695197	G	-	DEL	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	frame_shift_del	c.7454	p.P2485fs	0.002	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	59	0	0	25	15	37.5	-	-	-	-	30695197	G	-	30695197	7	5	278	1	0	1	0	1	0	0	0	0	15874	1348	47	0	923	0	TEX15	8	30695197	Frame_Shift_Del	DEL	G	TCGA-AN-A04C-01A-21W-A050-09	4329241	30695197	115668825	26	31061										
ALDOB	0	genome.wustl.edu	37	chr9	104184143	104184143	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gggtggaagcagccccagaaGaacccgtgtgaacatactgt	13	10	0	3			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	9	104184143	104184143	G	A	SNP	ALDOB	ENST00000374855	human	ensembl	69_37n	-1	known	missense	c.1043	p.S348F	0.538	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOB	HGNC	ENSG00000136872	191	0	0	297	83	21.84	-	-	-	A	104184143	G	A	104184143	3	1	278	1	0	0	0	0	1	0	0	0	508	942	33	2	55	2	ALDOB	9	104184143	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		104184143	37029288	27	31062										
RNF20	0	genome.wustl.edu	37	chr9	104314674	104314674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tattctcccagacacgcctgCgtagtggtagtgccctcctg	10	14	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	9	104314674	104314674	C	T	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.1540	p.R514C	0.997	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	155	0	0	131	41	23.7	-	-	-	T	104314674	C	T	104314674	3	4	278	1	0	0	0	0	1	0	0	0	13559	768	27	1	1586	1	RNF20	9	104314674	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	130531	104314674	36898757	28	31063										
UPF2	0	genome.wustl.edu	37	chr10	11978707	11978707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctttaacagattcaccacttCgttgctaaaagaaattaaaa	4	8	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	10	11978707	11978707	C	T	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	missense	c.3383	p.R1128Q	1.000	pfam_Up-fram_suppressor-2	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	119	0	0	242	42	14.79	-	-	-	T	11978707	C	T	11978707	3	4	278	1	0	0	0	0	1	0	0	0	17101	884	31	1	451	1	UPF2	10	11978707	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		11978707	123556040	29	31064										
RCN1	0	genome.wustl.edu	37	chr11	32125021	32125021	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tggtatatgaatcagacaaaAacaaggtatttcccattctt	6	7	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	11	32125021	32125021	A	T	SNP	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	missense	c.883	p.N295Y	0.986	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	121	0	0	108	22	16.92	-	-	-	T	32125021	A	T	32125021	3	4	278	1	0	0	0	0	1	0	0	0	13262	14	1	5	901	5	RCN1	11	32125021	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09		32125021	102881495	30	31065										
MYO7A	0	genome.wustl.edu	37	chr11	76924905	76924905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tgccctttctgctcccccagGatatcctcaccactcatccc	4	20	3	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	11	76924905	76924905	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.6439	p.D2147N	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	169	0	0	57	22	27.85	-	-	-	A	76924905	G	A	76924905	3	1	278	1	0	0	0	0	1	0	0	0	10154	1188	41	2	6659	2	MYO7A	11	76924905	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	44799884	76924905	58081611	31	31066										
WNT5B	0	genome.wustl.edu	37	chr12	1755114	1755116	+	In_Frame_Del	DEL	GCA	GCA	-													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ggccgccatgcgcgtcacccGcaagggccggctggagctgg							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	1755114	1755116	GCA	-	DEL	WNT5B	ENST00000310594	human	ensembl	69_37n	1	known	in_frame_del	c.776_778	p.RK259in_frame_delQ	0.998:0.585:0.084	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	14	0	0	7	5	41.67	-	-	-	-	1755116	GCA	-	1755114	7	5	278	1	0	1	0	1	0	0	0	0	17489	1087	38	0	790	0	WNT5B	12	1755114	In_Frame_Del	DEL	GCA	TCGA-AN-A04C-01A-21W-A050-09		1755114	132096781	32	31067										
CD4	0	genome.wustl.edu	37	chr12	6926435	6926435	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tgggtgctgaaccctgaggcGgggatgtggcagtgtctgct	18	8	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	6926435	6926435	G	A	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	silent	c.1095	p.A365	0.001	pfam_Ig_C2-set,prints_Ag_CD4	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	204	0	0	688	445	39.17	-	-	-	A	6926435	G	A	6926435	2	1	278	1	0	0	0	0	0	0	0	1	3043	1103	39	1		1	CD4	12	6926435	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	5171321	6926435	126925460	33	31068										
MLL2	0	genome.wustl.edu	37	chr12	49427612	49427612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	agggagcttggtgagcagccGgggactctgggaagggctga	20	7	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	49427612	49427612	G	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.10876	p.R3626W	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	17	0	0	15	6	28.57	-	-	-	A	49427612	G	A	49427612	3	1	278	1	0	0	0	0	1	0	0	0	9692	1115	39	1	5801	1	MLL2	12	49427612	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	42501177	49427612	84424283	34	31069										
FMNL3	0	genome.wustl.edu	37	chr12	50050614	50050614	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gaaggaactcaccttggattCttgttattgaggctaagtgc	11	7	2	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	50050614	50050614	C	G	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.783	p.K261N	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	506	0	0	352	192	35.29	-	-	-	G	50050614	C	G	50050614	3	3	278	1	0	0	0	0	1	0	0	0	5999	912	32	2	2376	2	FMNL3	12	50050614	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	623002	50050614	83801281	35	31070										
FBXO21	0	genome.wustl.edu	37	chr12	117624363	117624363	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ggttctcaatgtcactgaagCcattacaaggaacctatgaa	8	9	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	117624363	117624363	C	T	SNP	FBXO21	ENST00000550180	human	ensembl	69_37n	-1	novel	nonsense	c.219	p.W73*	1.000	NULL	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXO21	HGNC	ENSG00000135108	289	0	0	104	42	28.77	-	-	-	T	117624363	C	T	117624363	4	4	278	1	0	0	0	0	0	1	0	0	5779	739	26	4	1537	4	FBXO21	12	117624363	Nonsense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	67573749	117624363	16227532	36	31071										
TMEM132B	0	genome.wustl.edu	37	chr12	125834766	125834766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ccaagatgatctgaagtggtCcctggtgagcttggacgaga	14	8	1	5			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	125834766	125834766	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	missense	c.821	p.S274Y	0.993	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	153	0	0	144	36	20	-	-	-	A	125834766	C	A	125834766	3	1	278	1	0	0	0	0	1	0	0	0	16141	855	30	2	827	2	TMEM132B	12	125834766	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	8210403	125834766	8017129	37	31072										
PUS1	0	genome.wustl.edu	37	chr12	132426023	132426023	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctgctacaagggcacgcacaActtccacaatttcacctcgc	6	16	1	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	12	132426023	132426023	A	G	SNP	PUS1	ENST00000376649	human	ensembl	69_37n	1	known	missense	c.731	p.N244S	1.000	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192	110	0	0	19	8	29.63	-	-	-	G	132426023	A	G	132426023	3	3	278	1	0	0	0	0	1	0	0	0	12913	43	2	5	749	5	PUS1	12	132426023	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	6591257	132426023	1425872	38	31073										
PCDH9	0	genome.wustl.edu	37	chr13	67801018	67801018	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tgtcaaaactcctgtttttcGgtccagatcaaagaaggagg	10	8	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	13	67801018	67801018	G	A	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	nonsense	c.1555	p.R519*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	177	1	0.56	67	16	19.28	-	-	-	A	67801018	G	A	67801018	4	1	278	1	0	0	0	0	0	1	0	0	11591	1124	39	1	2174	1	PCDH9	13	67801018	Nonsense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		67801018	47368860	39	31074										
UGGT2	0	genome.wustl.edu	37	chr13	96665616	96665616	+	Frame_Shift_Del	DEL	A	A	-													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cattttgagctttttcagacAatactttgtgaaatgcacta							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	13	96665616	96665616	A	-	DEL	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	frame_shift_del	c.605	p.L202fs	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	262	0	0	183	49	20.94	-	-	-	-	96665616	A	-	96665616	7	5	278	1	0	1	0	1	0	0	0	0	17039	131	5	0	4085	0	UGGT2	13	96665616	Frame_Shift_Del	DEL	A	TCGA-AN-A04C-01A-21W-A050-09	28864598	96665616	18504262	40	31075										
MTHFD1	0	genome.wustl.edu	37	chr14	64879189	64879189	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cttttaatgtctgttttgcaGattgggatcaaagccactca	8	8	3	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	14	64879189	64879189	G	A	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	splice_site	c.355-1	e4-1	1.000	-	-	-	no_errors	MTHFD1	HGNC	ENSG00000100714	530	0	0	267	46	14.65	-	-	-	A	64879189	G	A	64879189	5	1	278	1	0	0	0	0	0	0	1	0	9999	956	33	2	200	2	MTHFD1	14	64879189	Splice_Site	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		64879189	42470351	41	31076										
C15orf39	0	genome.wustl.edu	37	chr15	75503112	75503113	+	Frame_Shift_Ins	INS	-	-	T													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	actttgacactgaggctggaINSgctgtgtcctcctcagagcc							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	15	75503112	75503113	-	T	INS	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	frame_shift_ins	c.2799_2800	p.A933fs	0.003:0.002	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	110	0	0	24	10	29.41	-	-	-	T	75503113	-	T	75503112	7	5	278	1	0	1	1	0	0	0	0	0	1805	291	11	0	2805	0	C15orf39	15	75503112	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09		75503112	27028280	42	31077	254	2								
C15orf39	0	genome.wustl.edu	37	chr15	75503113	75503114	+	Frame_Shift_Ins	INS	-	-	C													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctttgacactgaggctggagINSctgtgtcctcctcagagccc							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	15	75503113	75503114	-	C	INS	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	frame_shift_ins	c.2800_2801	p.V935fs	0.002:0.004	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	106	0	0	24	10	29.41	-	-	-	C	75503114	-	C	75503113	7	5	278	1	0	1	1	0	0	0	0	0	1805	971	34	0	2806	0	C15orf39	15	75503113	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	1	75503113	27028279	43	31078	254	2								
AGRP	0	genome.wustl.edu	37	chr16	67517232	67517233	+	Frame_Shift_Ins	INS	-	-	T													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ccctccatgggggccaagccINScatctgggctcctcgcgtgg							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	16	67517232	67517233	-	T	INS	AGRP	ENST00000290953	human	ensembl	69_37n	-1	known	frame_shift_ins	c.70_69	p.G23fs	0.003:0.003	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti,smart_Agouti,pfscan_Agouti	-	no_errors	AGRP	HGNC	ENSG00000159723	16	0	0	13	7	35	-	-	-	T	67517233	-	T	67517232	7	5	278	1	0	1	1	0	0	0	0	0	398	623	22	0	340	0	AGRP	16	67517232	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09		67517232	22837521	44	31079										
HEXIM2	0	genome.wustl.edu	37	chr17	43246972	43246972	+	Frame_Shift_Del	DEL	G	G	-													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctggtgcgagactacctggaGctggagaagcggctgtcgca							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	17	43246972	43246972	G	-	DEL	HEXIM2	ENST00000307275	human	ensembl	69_37n	1	known	frame_shift_del	c.657	p.E219fs	0.998	NULL	NULL	-	no_errors	HEXIM2	HGNC	ENSG00000168517	9	0	0	7	12	63.16	-	-	-	-	43246972	G	-	43246972	7	5	278	1	0	1	0	1	0	0	0	0	7128	962	34	0	663	0	HEXIM2	17	43246972	Frame_Shift_Del	DEL	G	TCGA-AN-A04C-01A-21W-A050-09		43246972	37948238	45	31080										
SPATA20	0	genome.wustl.edu	37	chr17	48626803	48626805	+	In_Frame_Del	DEL	GAG	GAG	-													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	agctggatgagggctatgatGaggaatacggtggcttcgct							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	17	48626803	48626805	GAG	-	DEL	SPATA20	ENST00000006658	human	ensembl	69_37n	1	known	in_frame_del	c.817_819	p.E274in_frame_del	1.000:1.000:1.000	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282	9	0	0	18	11	37.93	-	-	-	-	48626805	GAG	-	48626803	7	5	278	1	0	1	0	1	0	0	0	0	15097	1291	45	0	843	0	SPATA20	17	48626803	In_Frame_Del	DEL	GAG	TCGA-AN-A04C-01A-21W-A050-09	5379831	48626803	32568407	46	31081										
SCN4A	0	genome.wustl.edu	37	chr17	62034540	62034541	+	In_Frame_Ins	INS	-	-	TTG													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ccacaagattgccgatgaccINSatgaccatgaggaagacggt							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	17	62034540	62034541	-	TTG	INS	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	in_frame_ins	c.2358_2357	p.M786in_frame_insIK	1.000:1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	98	0	0	42	5	10.64	-	-	-	TTG	62034541	-	TTG	62034540	7	5	278	1	0	1	1	0	0	0	0	0	14008	594	21	0	3200	0	SCN4A	17	62034540	In_Frame_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	13407737	62034540	19160670	47	31082										
GRIN2C	0	genome.wustl.edu	37	chr17	72848644	72848644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cgtggcccgggtgcaggctgGtgatgacggcgaaggcgctc	19	11	0	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	17	72848644	72848644	G	C	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	missense	c.506	p.T169S	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	10	0	0	0	10	100	-	-	-	C	72848644	G	C	72848644	3	2	278	1	0	0	0	0	1	0	0	0	6832	1261	44	4	3239	4	GRIN2C	17	72848644	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	10814104	72848644	8346566	48	31083										
HEXDC	0	genome.wustl.edu	37	chr17	80400297	80400298	+	Frame_Shift_Ins	INS	-	-	G													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gggggctcctgctggaggctINSgggggggctctgcactgcca							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	17	80400297	80400298	-	G	INS	HEXDC	ENST00000337014	human	ensembl	69_37n	1	known	frame_shift_ins	c.1587_1588	p.A531fs	0.001:0.000	NULL	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660	15	0	0	4	2	33.33	-	-	-	G	80400298	-	G	80400297	7	5	278	1	0	1	1	0	0	0	0	0	7126	1567	55	0	1629	0	HEXDC	17	80400297	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	7551653	80400297	794913	49	31084										
DCC	0	genome.wustl.edu	37	chr18	50731687	50731687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	cctatgcaaacggtccagtcCaaggttacagattgttctgc	9	11	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	18	50731687	50731687	C	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.1675	p.Q559K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	347	1	0.29	236	53	18.34	-	-	-	A	50731687	C	A	50731687	3	1	278	1	0	0	0	0	1	0	0	0	4313	595	21	4	1713	4	DCC	18	50731687	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		50731687	27345561	50	31085										
ZNF791	0	genome.wustl.edu	37	chr19	12739846	12739846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ccttatgaatgtaaggaatgCgggaaggcctttatttatcc	10	7	0	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	12739846	12739846	C	T	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	silent	c.1503	p.C501	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	171	0	0	72	9	11.11	-	-	-	T	12739846	C	T	12739846	2	4	278	1	0	0	0	0	0	0	0	1	18256	776	27	1		1	ZNF791	19	12739846	Silent	SNP	C	TCGA-AN-A04C-01A-21W-A050-09		12739846	46389137	51	31086										
FCGBP	0	genome.wustl.edu	37	chr19	40370213	40370213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	acccggactttgccgatctcGtccttgtggatggagatgtt	12	10	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	40370213	40370213	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12453	p.D4151	0.059	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	12	0	0	16	11	40.74	-	-	-	A	40370213	G	A	40370213	2	1	278	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40370213	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	27630367	40370213	18758770	52	31087										
GRIK5	0	genome.wustl.edu	37	chr19	42558011	42558011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gccgggacttttctaggatgCgcagggtgtagttggttctc	15	8	2	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	42558011	42558011	C	T	SNP	GRIK5	ENST00000301218	human	ensembl	69_37n	-1	known	missense	c.1127	p.R376H	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737	157	0	0	90	14	13.46	-	-	-	T	42558011	C	T	42558011	3	4	278	1	0	0	0	0	1	0	0	0	6828	768	27	1	1859	1	GRIK5	19	42558011	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	2187798	42558011	16570972	53	31088										
RPL13A	0	genome.wustl.edu	37	chr19	49993509	49993509	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gccggaaggtggtggtcgtaCgctgtgaaggcatcaacatt	15	8	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	49993509	49993509	C	G	SNP	RPL13A	ENST00000391857	human	ensembl	69_37n	1	known	missense	c.109	p.R37G	0.998	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541	67	0	0	69	25	26.6	-	-	-	G	49993509	C	G	49993509	3	3	278	1	0	0	0	0	1	0	0	0	13646	536	19	3	119	3	RPL13A	19	49993509	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	7435498	49993509	9135474	54	31089										
SIGLEC5	0	genome.wustl.edu	37	chr19	52133292	52133292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ctgggttgtttgtggccacaAcctcagcgtagtatgggatc	13	9	1	0			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	52133292	52133292	A	G	SNP	SIGLEC5	ENST00000429354	human	ensembl	69_37n	-1	known	missense	c.215	p.V72A	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	25	0	0	28	5	15.15	-	-	-	G	52133292	A	G	52133292	3	3	278	1	0	0	0	0	1	0	0	0	14400	43	2	5	1472	5	SIGLEC5	19	52133292	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	2139783	52133292	6995691	55	31090										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325455	55325455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	aatgctgagcccagagcgttGtctcctgcccatgagcacca	10	14	1	3			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	19	55325455	55325455	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	21	0	0	40	22	35.48	-	-	-	A	55325455	G	A	55325455	2	1	278	1	0	0	0	0	0	0	0	1	8371	1368	48	4		4	KIR2DL4	19	55325455	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	3192163	55325455	3803528	56	31091										
KCNB1	0	genome.wustl.edu	37	chr20	47990079	47990079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	caccctccatgaagttgactTtaagtgctcggagcttcaaa	8	11	1	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	20	47990079	47990079	T	C	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.2018	p.K673R	1.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	58	0	0	59	17	22.37	-	-	-	C	47990079	T	C	47990079	3	2	278	1	0	0	0	0	1	0	0	0	8066	1841	64	5	562	5	KCNB1	20	47990079	Missense_Mutation	SNP	T	TCGA-AN-A04C-01A-21W-A050-09		47990079	15035441	57	31092										
BCAS1	0	genome.wustl.edu	37	chr20	52644991	52644991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ggaacctcatccaccttgtcTtgatgctctgccctcttggc	8	15	4	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	20	52644991	52644991	T	G	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	missense	c.663	p.Q221H	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	288	0	0	362	79	17.91	-	-	-	G	52644991	T	G	52644991	3	3	278	1	0	0	0	0	1	0	0	0	1354	1606	56	5	1127	5	BCAS1	20	52644991	Missense_Mutation	SNP	T	TCGA-AN-A04C-01A-21W-A050-09	4654912	52644991	10380529	58	31093										
DIDO1	0	genome.wustl.edu	37	chr20	61537437	61537438	+	Frame_Shift_Ins	INS	-	-	T													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ggtctcttgtgcacagaagaINSgattttaatacctgcctgga							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	20	61537437	61537438	-	T	INS	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1390_1389	p.S463fs	0.995:0.993	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	84	0	0	136	185	57.63	-	-	-	T	61537438	-	T	61537437	7	5	278	1	0	1	1	0	0	0	0	0	4558	304	11	0	5506	0	DIDO1	20	61537437	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	8892446	61537437	1488083	59	31094										
TRAPPC10	0	genome.wustl.edu	37	chr21	45502669	45502669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	acgataatgtctatttacagGtcataagatagtgctaccca	7	8	2	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	21	45502669	45502669	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.1724	p.G575D	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	151	0	0	63	20	24.1	-	-	-	A	45502669	G	A	45502669	3	1	278	1	0	0	0	0	1	0	0	0	16553	1275	44	4	1778	4	TRAPPC10	21	45502669	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		45502669	2627226	60	31095										
FAM47B	0	genome.wustl.edu	37	chrX	34962204	34962204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gaagcctcccaagactcgtcGggtgtccagtctctgcccgg	12	15	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	34962204	34962204	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1256	p.R419Q	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	146	0	0	155	37	19.27	-	-	-	A	34962204	G	A	34962204	3	1	278	1	0	0	0	0	1	0	0	0	5616	1116	39	1	1258	1	FAM47B	23	34962204	Missense_Mutation	SNP	G	TCGA-AN-A04C-01A-21W-A050-09		34962204	120308356	61	31096										
KCND1	0	genome.wustl.edu	37	chrX	48826431	48826431	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tgtcagggtcgcgatcgaagAagtactcgcctgagtcagca	13	10	2	2			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	48826431	48826431	A	C	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.248	p.F83C	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	42	0	0	23	5	17.86	-	-	-	C	48826431	A	C	48826431	3	2	278	1	0	0	0	0	1	0	0	0	8072	246	9	5	1719	5	KCND1	23	48826431	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	13864227	48826431	106444129	62	31097										
TFE3	0	genome.wustl.edu	37	chrX	48887951	48887952	+	Frame_Shift_Ins	INS	-	-	C													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	ggggagcattctgggcaggtINScccccccctacatggaacgt							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	48887951	48887952	-	C	INS	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1446_1445	p.P483fs	0.035:0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	93	0	0	189	25	11.68	-	-	-	C	48887952	-	C	48887951	7	5	278	1	0	1	1	0	0	0	0	0	15895	1654	58	0	285	0	TFE3	23	48887951	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	61520	48887951	106382609	63	31098										
ARR3	0	genome.wustl.edu	37	chrX	69501557	69501557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tagtcatcgaggagtttacgCggaaaggcgaggaggagagc	17	6	1	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	69501557	69501557	C	T	SNP	ARR3	ENST00000307959	human	ensembl	69_37n	1	known	missense	c.1108	p.R370W	0.002	superfamily_Ig_E-set,prints_Arrestin	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500	243	0	0	359	97	21.27	-	-	-	T	69501557	C	T	69501557	3	4	278	1	0	0	0	0	1	0	0	0	983	759	27	1	1170	1	ARR3	23	69501557	Missense_Mutation	SNP	C	TCGA-AN-A04C-01A-21W-A050-09	20613606	69501557	85769003	64	31099										
IRS4	0	genome.wustl.edu	37	chrX	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C													0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tcccacttcctgagcctttgINSccccccccagagttcttgcc							TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	269	0	0	117	18	13.33	-	-	-	C	107977803	-	C	107977802	7	5	278	1	0	1	1	0	0	0	0	0	7896	1306	46	0	2004	0	IRS4	23	107977802	Frame_Shift_Ins	INS	-	TCGA-AN-A04C-01A-21W-A050-09	38476245	107977802	47292758	65	31100										
DOCK11	0	genome.wustl.edu	37	chrX	117742260	117742260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	tacatgaaaccctggctactAcgatgatagcaatattgaaa	7	8	0	3			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	117742260	117742260	A	G	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.2818	p.T940A	0.197	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	134	0	0	206	50	19.53	-	-	-	G	117742260	A	G	117742260	3	3	278	1	0	0	0	0	1	0	0	0	4721	391	14	5	2920	5	DOCK11	23	117742260	Missense_Mutation	SNP	A	TCGA-AN-A04C-01A-21W-A050-09	9764458	117742260	37528300	66	31101										
GPC4	0	genome.wustl.edu	37	chrX	132458221	132458221	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0757575757575758	5	0.843743695016429	1.07244318181818	3.43181818181818	0.527972027972028	1	1	0	gcaaccgctaagccttgagcGaaagtacgggctgctacaaa	11	11	0	1			TCGA-AN-A04C-01A-21W-A050-09	TCGA-AN-A04C-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1302f79-cc50-487a-9db5-016df85e67d7	e0036635-4a4e-485d-8e5d-810964be64a2	X	132458221	132458221	G	A	SNP	GPC4	ENST00000370828	human	ensembl	69_37n	-1	known	silent	c.663	p.F221	0.999	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716	133	0	0	218	28	11.38	-	-	-	A	132458221	G	A	132458221	2	1	278	1	0	0	0	0	0	0	0	1	6650	1049	37	1		1	GPC4	23	132458221	Silent	SNP	G	TCGA-AN-A04C-01A-21W-A050-09	14715961	132458221	22812339	67	31102										
PRAMEF22	0	genome.wustl.edu	37	chr1	13036693	13036693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctaagctctgacagccaagaAcagttagttgctgaattcag	9	9	2	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	13036693	13036693	A	G	SNP	PRAMEF22	ENST00000376187	human	ensembl	69_37n	1	known	silent	c.765	p.E255	0.007	NULL	NULL	-	no_errors	PRAMEF22	HGNC	ENSG00000204508	39	0	0	43	33	43.42	-	-	-	G	13036693	A	G	13036693	2	3	279	1	0	0	0	0	0	0	0	1	12516	40	2	5		5	PRAMEF22	1	13036693	Silent	SNP	A	TCGA-AN-A04D-01A-21W-A050-09		13036693	236213928	1	31103										
CROCC	0	genome.wustl.edu	37	chr1	17263261	17263261	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gccctggagaaacaggccctGctgcaggcccagctggagga	15	13	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	17263261	17263261	G	A	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.1086	p.L362	0.997	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	21	0	0	10	9	47.37	-	-	-	A	17263261	G	A	17263261	2	1	279	1	0	0	0	0	0	0	0	1	3923	1306	46	4		4	CROCC	1	17263261	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	4226568	17263261	231987360	2	31104										
C1orf172	0	genome.wustl.edu	37	chr1	27278442	27278443	+	Frame_Shift_Ins	INS	-	-	G													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cgctggccatcccgccggctINSggggggtgcacgatcagggc							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	27278442	27278443	-	G	INS	C1orf172	ENST00000320567	human	ensembl	69_37n	-1	known	frame_shift_ins	c.430_429	p.S143fs	0.989:0.427	NULL	NULL	-	no_errors	C1orf172	HGNC	ENSG00000175707	20	0	0	5	4	44.44	-	-	-	G	27278443	-	G	27278442	7	5	279	1	0	1	1	0	0	0	0	0	2032	1580	55	0	778	0	C1orf172	1	27278442	Frame_Shift_Ins	INS	-	TCGA-AN-A04D-01A-21W-A050-09	10015181	27278442	221972179	3	31105										
PHACTR4	0	genome.wustl.edu	37	chr1	28800394	28800394	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ttagatctacaccaggagatTccccagcaggaagatcagaa	9	10	2	4			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	28800394	28800394	T	G	SNP	PHACTR4	ENST00000373836	human	ensembl	69_37n	1	known	missense	c.1182	p.I394M	0.077	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138	118	0	0	238	84	26.09	-	-	-	G	28800394	T	G	28800394	3	3	279	1	0	0	0	0	1	0	0	0	11886	1771	62	5	1224	5	PHACTR4	1	28800394	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	1521952	28800394	220450227	4	31106										
TTC39A	0	genome.wustl.edu	37	chr1	51767912	51767913	+	Frame_Shift_Ins	INS	-	-	C													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tctggttggttctctcttggINSccccccccccgcccccagtc							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	51767912	51767913	-	C	INS	TTC39A	ENST00000262676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1104_1103	p.Q369fs	0.000:0.000	NULL	pfam_OMP_IML2_mit/TPR_39	-	no_errors	TTC39A	HGNC	ENSG00000085831	9	0	0	4	2	33.33	-	-	-	C	51767913	-	C	51767912	7	5	279	1	0	1	1	0	0	0	0	0	16804	1218	42	0		0	TTC39A	1	51767912	Frame_Shift_Ins	INS	-	TCGA-AN-A04D-01A-21W-A050-09	22967518	51767912	197482709	5	31107										
GLIS1	0	genome.wustl.edu	37	chr1	54059934	54059934	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	atgtggctcttctcgatgtgCcgcaccagctcctcctgctg	10	15	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	54059934	54059934	C	T	SNP	GLIS1	ENST00000312233	human	ensembl	69_37n	-1	known	silent	c.642	p.R214	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332	19	0	0	12	29	70.73	-	-	-	T	54059934	C	T	54059934	2	4	279	1	0	0	0	0	0	0	0	1	6497	726	26	4		4	GLIS1	1	54059934	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	2292022	54059934	195190687	6	31108										
RORC	0	genome.wustl.edu	37	chr1	151787698	151787698	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agggggacaggcagaagcctCaggcaggtcaggcgaggagc	19	9	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	151787698	151787698	C	T	SNP	RORC	ENST00000392697	human	ensembl	69_37n	-1	known	missense	c.664	p.E222K	0.995	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365	33	0	0	36	12	24.49	-	-	-	T	151787698	C	T	151787698	3	4	279	1	0	0	0	0	1	0	0	0	13616	835	29	2	1082	2	RORC	1	151787698	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	97727764	151787698	97462923	7	31109										
RUSC1	0	genome.wustl.edu	37	chr1	155298046	155298046	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gagcttgaggcctcagcaccCaggatggtgcaaacccatag	12	12	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	155298046	155298046	C	G	SNP	RUSC1	ENST00000368352	human	ensembl	69_37n	1	known	silent	c.2520	p.P840	0.579	superfamily_SH3_domain	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753	34	0	0	50	16	24.24	-	-	-	G	155298046	C	G	155298046	2	3	279	1	0	0	0	0	0	0	0	1	13836	581	21	4		4	RUSC1	1	155298046	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	3510348	155298046	93952575	8	31110										
GON4L	0	genome.wustl.edu	37	chr1	155744795	155744795	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gacacatctgtctcctaccaGtcttcttgacagttttatga	6	11	4	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	155744795	155744795	G	C	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.2348	p.T783S	0.990	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	144	0	0	215	79	26.87	-	-	-	C	155744795	G	C	155744795	3	2	279	1	0	0	0	0	1	0	0	0	6621	1029	36	4	4555	4	GON4L	1	155744795	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	446749	155744795	93505826	9	31111										
FCRL5	0	genome.wustl.edu	37	chr1	157512676	157512676	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgagaggctcacagccttacTgggcttggcgccaaggccat	13	12	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	157512676	157512676	T	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1096	p.S366C	0.017	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	103	0	0	155	48	23.65	-	-	-	A	157512676	T	A	157512676	3	1	279	1	0	0	0	0	1	0	0	0	5844	1580	55	5	1885	5	FCRL5	1	157512676	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	1767881	157512676	91737945	10	31112										
NOS1AP	0	genome.wustl.edu	37	chr1	162326813	162326813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgctgctcccttcttcttccTcgaagcctccaggcctgggc	9	17	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	162326813	162326813	T	C	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	missense	c.826	p.S276P	0.004	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	35	0	0	62	21	25.3	-	-	-	C	162326813	T	C	162326813	3	2	279	1	0	0	0	0	1	0	0	0	10614	1551	54	5	856	5	NOS1AP	1	162326813	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	4814137	162326813	86923808	11	31113										
UCK2	0	genome.wustl.edu	37	chr1	165865513	165865513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctcccaggaggtacgagaccTgttccagatgaagctttttg	11	10	0	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	165865513	165865513	T	C	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	missense	c.443	p.L148P	1.000	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_PRK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	91	0	0	178	59	24.89	-	-	-	C	165865513	T	C	165865513	3	2	279	1	0	0	0	0	1	0	0	0	17021	1580	55	5	457	5	UCK2	1	165865513	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	3538700	165865513	83385108	12	31114										
F5	0	genome.wustl.edu	37	chr1	169541502	169541502	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	attccttgaggatggatgctCaagggcttatctgccttatt	10	8	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	169541502	169541502	C	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.330	p.L110F	0.991	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	101	0	0	146	47	24.35	-	-	-	G	169541502	C	G	169541502	3	3	279	1	0	0	0	0	1	0	0	0	5385	825	29	2	6436	2	F5	1	169541502	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	3675989	169541502	79709119	13	31115										
TDRD5	0	genome.wustl.edu	37	chr1	179659890	179659890	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctagcagccgtgctattacaTtgtacaaagacaagcgtcaa	8	10	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	179659890	179659890	T	C	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	silent	c.2920	p.L974	0.006	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	98	0	0	141	45	24.19	-	-	-	C	179659890	T	C	179659890	2	2	279	1	0	0	0	0	0	0	0	1	15828	1490	52	5		5	TDRD5	1	179659890	Silent	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	10118388	179659890	69590731	14	31116										
IPO9	0	genome.wustl.edu	37	chr1	201798352	201798352	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gaaaagatggcggcggcggcGgcagctggtgcggcctccgg	20	11	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	201798352	201798352	G	A	SNP	IPO9	ENST00000361565	human	ensembl	69_37n	1	known	silent	c.15	p.A5	0.994	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	16	0	0	37	15	28.85	-	-	-	A	201798352	G	A	201798352	2	1	279	1	0	0	0	0	0	0	0	1	7853	1103	39	1		1	IPO9	1	201798352	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	22138462	201798352	47452269	15	31117										
SLC26A9	0	genome.wustl.edu	37	chr1	205898368	205898368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gggatggggaagcgaatcttGtgcatgtagcgagcattgag	17	5	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	205898368	205898368	G	T	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.834	p.H278Q	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	189	0	0	394	91	18.76	-	-	-	T	205898368	G	T	205898368	3	4	279	1	0	0	0	0	1	0	0	0	14613	1368	48	4	1897	4	SLC26A9	1	205898368	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	4100016	205898368	43352253	16	31118										
USH2A	0	genome.wustl.edu	37	chr1	216221986	216221986	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agggtagcaagcctgtcaatAtgcctataataaaaagggac	10	7	1	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	216221986	216221986	A	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.6053	p.I2018K	0.930	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	356	0	0	407	176	30.14	-	-	-	T	216221986	A	T	216221986	3	4	279	1	0	0	0	0	1	0	0	0	17133	449	16	5	9723	5	USH2A	1	216221986	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	10323618	216221986	33028635	17	31119										
EXO1	0	genome.wustl.edu	37	chr1	242030258	242030258	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctgtttcagatgccccacaaTtgaaggaaaatccaagtact	7	10	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	242030258	242030258	T	G	SNP	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	missense	c.1168	p.L390V	0.000	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	170	0	0	278	105	27.42	-	-	-	G	242030258	T	G	242030258	3	3	279	1	0	0	0	0	1	0	0	0	5336	1490	52	5	1198	5	EXO1	1	242030258	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	25808272	242030258	7220363	18	31120										
CEP170	0	genome.wustl.edu	37	chr1	243354442	243354442	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agtcagcaactttgttttcgGgtgccatcattcctgtttga	9	9	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	1	243354442	243354442	G	C	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.986	p.P329R	0.934	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	185	0	0	343	50	12.66	-	-	-	C	243354442	G	C	243354442	3	2	279	1	0	0	0	0	1	0	0	0	3279	1232	43	4	3850	4	CEP170	1	243354442	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	1324184	243354442	5896179	19	31121										
ATAD2B	0	genome.wustl.edu	37	chr2	24046432	24046432	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agggccttgatatcggctccAcagtagcctaatacacaaaa	8	11	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	24046432	24046432	A	T	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	nonsense	c.1827	p.C609*	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	71	0	0	31	27	46.55	-	-	-	T	24046432	A	T	24046432	4	4	279	1	0	0	0	0	0	1	0	0	1076	157	6	5	2601	5	ATAD2B	2	24046432	Nonsense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09		24046432	219152941	20	31122										
FAM98A	0	genome.wustl.edu	37	chr2	33810243	33810243	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cacctcctccaccactccctCcatctgtccagcctccttga	3	22	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	33810243	33810243	C	G	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.1157	p.G386A	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	394	0	0	329	238	41.98	-	-	-	G	33810243	C	G	33810243	3	3	279	1	0	0	0	0	1	0	0	0	5702	855	30	2	403	2	FAM98A	2	33810243	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	9763811	33810243	209389130	21	31123										
TMEM131	0	genome.wustl.edu	37	chr2	98428967	98428967	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	attgcctctttccacagctaCaagttctattgataaaccgt	5	11	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	98428967	98428967	C	G	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.1780	p.V594L	0.996	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	129	0	0	77	57	42.54	-	-	-	G	98428967	C	G	98428967	3	3	279	1	0	0	0	0	1	0	0	0	16139	478	17	4	3971	4	TMEM131	2	98428967	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	64618724	98428967	144770406	22	31124										
MBD5	0	genome.wustl.edu	37	chr2	149247300	149247300	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctgcctcaattggtgacccaTtaaatctctccagtgctgtc	7	13	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	149247300	149247300	T	C	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	silent	c.3400	p.L1134	0.077	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	118	0	0	89	57	39.04	-	-	-	C	149247300	T	C	149247300	2	2	279	1	0	0	0	0	0	0	0	1	9418	1490	52	5		5	MBD5	2	149247300	Silent	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	50818333	149247300	93952073	23	31125										
TTN	0	genome.wustl.edu	37	chr2	179576811	179576811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	taaaatgcattttgtaagtcGtagtgggtctcaattttgta	9	4	1	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	179576811	179576811	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.24014	p.T8005M	0.038	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	43	0	0	22	8	26.67	-	-	-	A	179576811	G	A	179576811	3	1	279	1	0	0	0	0	1	0	0	0	16832	1145	40	1	76851	1	TTN	2	179576811	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	30329511	179576811	63622562	24	31126										
TTN	0	genome.wustl.edu	37	chr2	179588692	179588692	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gaattcaactgcaatgtgcaGacattatctgaaaatgtggt	9	6	2	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	2	179588692	179588692	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.17562	p.V5854	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	86	0	0	42	23	35.38	-	-	-	C	179588692	G	C	179588692	2	2	279	1	0	0	0	0	0	0	0	1	16832	929	33	2		2	TTN	2	179588692	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	11881	179588692	63610681	25	31127										
AZI2	0	genome.wustl.edu	37	chr3	28365652	28365652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgtctcacttgatttaggagGacttggaaatacccaggaat	10	7	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	28365652	28365652	G	A	SNP	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	missense	c.1060	p.P354S	1.000	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	127	0	0	21	61	74.39	-	-	-	A	28365652	G	A	28365652	3	1	279	1	0	0	0	0	1	0	0	0	1245	1174	41	2	122	2	AZI2	3	28365652	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		28365652	169656778	26	31128										
COL7A1	0	genome.wustl.edu	37	chr3	48608296	48608296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctgttcccagcccctcacccGctctccactagggcctggct	8	20	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	48608296	48608296	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.7270	p.R2424W	1.000	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	39	0	0	11	34	73.91	-	-	-	A	48608296	G	A	48608296	3	1	279	1	0	0	0	0	1	0	0	0	3734	1086	38	1	1664	1	COL7A1	3	48608296	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	20242644	48608296	149414134	27	31129										
WDR52	0	genome.wustl.edu	37	chr3	113146069	113146069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	aatcaccatactgaaatgaaCtcaaacttccttccaaacgt	3	12	2	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	113146069	113146069	C	A	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.218	p.S73I	0.574	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	251	0	0	300	95	24.05	-	-	-	A	113146069	C	A	113146069	3	1	279	1	0	0	0	0	1	0	0	0	17401	565	20	4	5493	4	WDR52	3	113146069	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	64537773	113146069	84876361	28	31130										
ITGB5	0	genome.wustl.edu	37	chr3	124567323	124567323	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tccaagtcatccttcatggaCagggagaggtccatcaggta	11	10	3	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	124567323	124567323	C	G	SNP	ITGB5	ENST00000296181	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781	123	0	0	151	67	30.73	-	-	-	G	124567323	C	G	124567323	2	3	279	1	0	0	0	0	0	0	0	1	7952	465	17	4		4	ITGB5	3	124567323	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	11421254	124567323	73455107	29	31131										
SI	0	genome.wustl.edu	37	chr3	164737418	164737418	+	Frame_Shift_Del	DEL	C	C	-													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gttggtctcttgtgaacattCcccaagtattccagttcaga							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	164737418	164737418	C	-	DEL	SI	ENST00000264382	human	ensembl	69_37n	-1	known	frame_shift_del	c.3395	p.G1132fs	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	201	0	0	242	112	31.37	-	-	-	-	164737418	C	-	164737418	7	5	279	1	0	1	0	1	0	0	0	0	14386	855	30	0	2172	0	SI	3	164737418	Frame_Shift_Del	DEL	C	TCGA-AN-A04D-01A-21W-A050-09	40170095	164737418	33285012	30	31132										
MYNN	0	genome.wustl.edu	37	chr3	169500356	169500356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtaggcatactggagaaaagCcttatgtatgtgatacctgt	11	6	0	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	169500356	169500356	C	T	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	missense	c.1324	p.P442S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	148	0	0	136	222	62.01	-	-	-	T	169500356	C	T	169500356	3	4	279	1	0	0	0	0	1	0	0	0	10133	739	26	4	1338	4	MYNN	3	169500356	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	4762938	169500356	28522074	31	31133										
PHC3	0	genome.wustl.edu	37	chr3	169854406	169854406	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tttggtggaccattctgtgaGctagataatacacccaactt	8	9	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	169854406	169854406	G	C	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	missense	c.720	p.S240R	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	355	0	0	401	128	24.2	-	-	-	C	169854406	G	C	169854406	3	2	279	1	0	0	0	0	1	0	0	0	11892	962	34	4	2303	4	PHC3	3	169854406	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	354050	169854406	28168024	32	31134										
MFI2	0	genome.wustl.edu	37	chr3	196748288	196748288	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cactcaccatccgtgttctcCagtaccgtgctgtgcttcac	7	16	3	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	3	196748288	196748288	C	A	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	silent	c.699	p.L233	1.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	37	0	0	36	16	30.77	-	-	-	A	196748288	C	A	196748288	2	1	279	1	0	0	0	0	0	0	0	1	9593	581	21	4		4	MFI2	3	196748288	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	26893882	196748288	1274142	33	31135										
ACOX3	0	genome.wustl.edu	37	chr4	8416065	8416065	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ttgtgcgaatggccttggtaTtactgccgtggcttaattcg	12	8	0	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	4	8416065	8416065	T	G	SNP	ACOX3	ENST00000356406	human	ensembl	69_37n	-1	known	missense	c.497	p.N166T	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008	125	0	0	20	60	75	-	-	-	G	8416065	T	G	8416065	3	3	279	1	0	0	0	0	1	0	0	0	160	1493	52	5	1661	5	ACOX3	4	8416065	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09		8416065	182738211	34	31136										
GABRA4	0	genome.wustl.edu	37	chr4	46973128	46973128	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtcctagcgggaactgattcTttatttatccaaaatgaaac	7	8	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	4	46973128	46973128	T	C	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	silent	c.846	p.K282	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	168	0	0	57	64	52.89	-	-	-	C	46973128	T	C	46973128	2	2	279	1	0	0	0	0	0	0	0	1	6212	1606	56	5		5	GABRA4	4	46973128	Silent	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	38557063	46973128	144181148	35	31137										
C4orf17	0	genome.wustl.edu	37	chr4	100443690	100443690	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tccaatctgtactgtgaatgAtgatgagaatgcatttggaa	10	5	1	4			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	4	100443690	100443690	A	G	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	missense	c.161	p.D54G	1.000	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	233	0	0	276	80	22.47	-	-	-	G	100443690	A	G	100443690	3	3	279	1	0	0	0	0	1	0	0	0	2273	333	12	5	167	5	C4orf17	4	100443690	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	53470562	100443690	90710586	36	31138										
LRBA	0	genome.wustl.edu	37	chr4	151223890	151223890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ccccaatatatgactcagaaCgagcaaggcaagtgacgaca	9	11	1	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	4	151223890	151223890	C	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.7937	p.R2646H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	107	0	0	84	64	43.24	-	-	-	T	151223890	C	T	151223890	3	4	279	1	0	0	0	0	1	0	0	0	8997	536	19	1	674	1	LRBA	4	151223890	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	50780200	151223890	39930386	37	31139										
KIAA0947	0	genome.wustl.edu	37	chr5	5464610	5464610	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cagttctgtgcggccacgccGaagcacgcacttcctgtgcc	11	16	1	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	5	5464610	5464610	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	silent	c.5163	p.P1721	0.413	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	47	0	0	3	18	85.71	-	-	-	A	5464610	G	A	5464610	2	1	279	1	0	0	0	0	0	0	0	1	8254	1045	37	1		1	KIAA0947	5	5464610	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		5464610	175450650	38	31140										
SNCAIP	0	genome.wustl.edu	37	chr5	121780331	121780331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gccctcccagagcgccgagcGgcaggggcacaccctgtgct	14	17	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	5	121780331	121780331	G	T	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.1637	p.R546L	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	99	0	0	117	27	18.75	-	-	-	T	121780331	G	T	121780331	3	4	279	1	0	0	0	0	1	0	0	0	14930	1116	39	3	1522	3	SNCAIP	5	121780331	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	116315721	121780331	59134929	39	31141										
PCDHB2	0	genome.wustl.edu	37	chr5	140474886	140474886	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	aggaaccaacagtctccaaaAttacacaatcagtcccaatt	4	12	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	5	140474886	140474886	A	T	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.512	p.N171I	0.049	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	42	0	0	22	28	54.9	-	-	-	T	140474886	A	T	140474886	3	4	279	1	0	0	0	0	1	0	0	0	11615	101	4	5	514	5	PCDHB2	5	140474886	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	18694555	140474886	40440374	40	31142										
TNXB	0	genome.wustl.edu	37	chr6	32011575	32011575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctctcctcaaagcctcggacCgagaccacggtcacctcata	7	17	4	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	6	32011575	32011575	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.11475	p.S3825	0.003	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	12	0	0	6	14	70	-	-	-	T	32011575	C	T	32011575	2	4	279	1	0	0	0	0	0	0	0	1	16441	639	23	1		1	TNXB	6	32011575	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		32011575	139103492	41	31143										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34827338	34827338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgcacaagatgttgtccctgCccccagccaagtaagtggct	10	13	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	6	34827338	34827338	C	T	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	missense	c.3205	p.P1069S	0.968	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	104	0	0	58	44	43.14	-	-	-	T	34827338	C	T	34827338	3	4	279	1	0	0	0	0	1	0	0	0	17065	739	26	4	3259	4	UHRF1BP1	6	34827338	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	2815763	34827338	136287729	42	31144										
SPATS1	0	genome.wustl.edu	37	chr6	44320474	44320474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtgttacaggtgctaattgcAgtgattttctggaatctaag	11	5	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	6	44320474	44320474	A	C	SNP	SPATS1	ENST00000288390	human	ensembl	69_37n	1	known	missense	c.151	p.S51R	0.000	NULL	NULL	-	no_errors	SPATS1	HGNC	ENSG00000249481	193	0	0	124	106	45.89	-	-	-	C	44320474	A	C	44320474	3	2	279	1	0	0	0	0	1	0	0	0	15109	188	7	5	157	5	SPATS1	6	44320474	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	9493136	44320474	126794593	43	31145										
DEFB112	0	genome.wustl.edu	37	chr6	50011348	50011348	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	actgagtcctttgggatccaAttatttgggtccgtagggtc	12	8	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	6	50011348	50011348	A	T	SNP	DEFB112	ENST00000322246	human	ensembl	69_37n	-1	known	missense	c.282	p.N94K	0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872	102	0	0	66	46	41.07	-	-	-	T	50011348	A	T	50011348	3	4	279	1	0	0	0	0	1	0	0	0	4436	98	4	5	62	5	DEFB112	6	50011348	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	5690874	50011348	121103719	44	31146										
VNN2	0	genome.wustl.edu	37	chr6	133077134	133077134	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	atagatagagttgtccttggCcaggcagctgagtcttgctt	12	8	1	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	6	133077134	133077134	C	G	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.385	p.A129P	0.994	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	249	0	0	251	107	29.89	-	-	-	G	133077134	C	G	133077134	3	3	279	1	0	0	0	0	1	0	0	0	17280	739	26	4	1197	4	VNN2	6	133077134	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	83065786	133077134	38037933	45	31147										
ARPC1A	0	genome.wustl.edu	37	chr7	98946502	98946502	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agcaagcacattaaaaagccGattcgctccacagtcctcag	7	13	1	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	7	98946502	98946502	G	T	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	silent	c.420	p.P140	0.018	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	118	0	0	105	48	31.37	-	-	-	T	98946502	G	T	98946502	2	4	279	1	0	0	0	0	0	0	0	1	973	1045	37	3		3	ARPC1A	7	98946502	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		98946502	60192161	46	31148										
SLC30A8	0	genome.wustl.edu	37	chr8	118169971	118169971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ccatcctgtgcatctgggtgGtgactggcgtgctagtgtac	14	10	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	8	118169971	118169971	G	T	SNP	SLC30A8	ENST00000456015	human	ensembl	69_37n	1	known	missense	c.460	p.V154L	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756	268	0	0	711	147	17.13	-	-	-	T	118169971	G	T	118169971	3	4	279	1	0	0	0	0	1	0	0	0	14650	1261	44	4	474	4	SLC30A8	8	118169971	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		118169971	28194051	47	31149										
KLHL38	0	genome.wustl.edu	37	chr8	124664078	124664078	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agcatgggctcccccagcctCcactgattgagtttcaggga	11	13	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	8	124664078	124664078	C	G	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.1089	p.W363C	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	94	0	0	120	47	28.14	-	-	-	G	124664078	C	G	124664078	3	3	279	1	0	0	0	0	1	0	0	0	8443	856	30	2	668	2	KLHL38	8	124664078	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	6494107	124664078	21699944	48	31150										
ANKRD30A	0	genome.wustl.edu	37	chr10	37430800	37430800	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agcttggtggaaaaaacaccTgatgaggctgcatccttggt	12	8	0	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	10	37430800	37430800	T	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	silent	c.807	p.P269	0.009	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	98	0	0	67	34	33.66	-	-	-	A	37430800	T	A	37430800	2	1	279	1	0	0	0	0	0	0	0	1	658	1567	55	5		5	ANKRD30A	10	37430800	Silent	SNP	T	TCGA-AN-A04D-01A-21W-A050-09		37430800	98103947	49	31151										
SLC16A12	0	genome.wustl.edu	37	chr10	91198842	91198842	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gatgaaggtgccaatgccacTtcctgacatggcgataccat	10	11	0	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	10	91198842	91198842	T	C	SNP	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	missense	c.547	p.S183G	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	54	0	0	70	38	35.19	-	-	-	C	91198842	T	C	91198842	3	2	279	1	0	0	0	0	1	0	0	0	14494	1609	56	5	1015	5	SLC16A12	10	91198842	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	53768042	91198842	44335905	50	31152										
RRP12	0	genome.wustl.edu	37	chr10	99126551	99126551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctcctcctcctcttcttcctCctccacggcagcctggctca	5	21	3	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	10	99126551	99126551	C	G	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	missense	c.3163	p.E1055Q	1.000	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	48	0	0	49	43	46.74	-	-	-	G	99126551	C	G	99126551	3	3	279	1	0	0	0	0	1	0	0	0	13772	864	30	2	762	2	RRP12	10	99126551	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	7927709	99126551	36408196	51	31153										
C10orf2	0	genome.wustl.edu	37	chr10	102748073	102748073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gaaacttggccccaggccctCctcgcagacgttacaggaag	11	14	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	10	102748073	102748073	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.106	p.P36S	0.989	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	27	0	0	16	15	48.39	-	-	-	T	102748073	C	T	102748073	3	4	279	1	0	0	0	0	1	0	0	0	1607	855	30	2	108	2	C10orf2	10	102748073	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	3621522	102748073	32786674	52	31154										
ADAM12	0	genome.wustl.edu	37	chr10	127760205	127760205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ttcctgctgcaactgctgaaCaccatgggaaatgggtacct	10	11	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	10	127760205	127760205	C	T	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	silent	c.1173	p.V391	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	91	0	0	87	56	39.16	-	-	-	T	127760205	C	T	127760205	2	4	279	1	0	0	0	0	0	0	0	1	236	465	17	4		4	ADAM12	10	127760205	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	25012132	127760205	7774542	53	31155										
ZFP91	0	genome.wustl.edu	37	chr11	58384774	58384775	+	Frame_Shift_Ins	INS	-	-	A													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tttcttgcaatatctgtggcINSaaaaaatttgagaagaagga							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	11	58384774	58384775	-	A	INS	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	frame_shift_ins	c.1308_1309	p.F438fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	78	0	0	35	24	40.68	-	-	-	A	58384775	-	A	58384774	7	5	279	1	0	1	1	0	0	0	0	0	17751	697	25	0	1350	0	ZFP91	11	58384774	Frame_Shift_Ins	INS	-	TCGA-AN-A04D-01A-21W-A050-09		58384774	76621742	54	31156										
OR10V1	0	genome.wustl.edu	37	chr11	59480439	59480439	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	atctttcagttccttgttccTcaaactatagatcaaggggt	7	9	4	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	11	59480439	59480439	T	A	SNP	OR10V1	ENST00000307552	human	ensembl	69_37n	-1	known	missense	c.880	p.R294W	1.000	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10V1	HGNC	ENSG00000172289	154	0	0	131	97	42.54	-	-	-	A	59480439	T	A	59480439	3	1	279	1	0	0	0	0	1	0	0	0	10993	1550	54	5	53	5	OR10V1	11	59480439	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	1095665	59480439	75526077	55	31157										
OR10S1	0	genome.wustl.edu	37	chr11	123847945	123847945	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	catttctgcacacatccttcTgttcatggccactgggtagt	8	12	3	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	11	123847945	123847945	T	A	SNP	OR10S1	ENST00000531945	human	ensembl	69_37n	-1	known	nonsense	c.454	p.R152*	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	124	0	0	126	40	23.95	-	-	-	A	123847945	T	A	123847945	4	1	279	1	0	0	0	0	0	1	0	0	10991	1588	55	5	545	5	OR10S1	11	123847945	Nonsense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	64367506	123847945	11158571	56	31158										
GRIN2B	0	genome.wustl.edu	37	chr12	13768083	13768083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtgagacagtcccattgctgCgtgacaccatgacactgatg	11	11	0	4			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	12	13768083	13768083	C	T	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1619	p.R540H	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	171	0	0	102	62	37.8	-	-	-	T	13768083	C	T	13768083	3	4	279	1	0	0	0	0	1	0	0	0	6831	768	27	1	2863	1	GRIN2B	12	13768083	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		13768083	120083812	57	31159										
C12orf40	0	genome.wustl.edu	37	chr12	40076596	40076596	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtgaaccagtctactcctaaCcttctatcagagaattgtga	7	10	3	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	12	40076596	40076596	C	A	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.870	p.N290K	0.000	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	230	0	0	107	85	44.27	-	-	-	A	40076596	C	A	40076596	3	1	279	1	0	0	0	0	1	0	0	0	1698	506	18	4	900	4	C12orf40	12	40076596	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	26308513	40076596	93775299	58	31160										
GNPTAB	0	genome.wustl.edu	37	chr12	102159023	102159023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	aggcaggcattcaccttttgGaataatatagtgagtctggt	11	6	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	12	102159023	102159023	G	C	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.1672	p.P558A	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	156	0	0	102	78	43.33	-	-	-	C	102159023	G	C	102159023	3	2	279	1	0	0	0	0	1	0	0	0	6597	1174	41	2	2134	2	GNPTAB	12	102159023	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	62082427	102159023	31692872	59	31161										
PRDM4	0	genome.wustl.edu	37	chr12	108134960	108134960	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gttatggatgtggctggtcaGatgggctttgaactctgtgt	15	5	2	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	12	108134960	108134960	G	A	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	silent	c.1687	p.L563	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM4	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	171	0	0	117	85	42.08	-	-	-	A	108134960	G	A	108134960	2	1	279	1	0	0	0	0	0	0	0	1	12540	933	33	2		2	PRDM4	12	108134960	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	5975937	108134960	25716935	60	31162										
DDX55	0	genome.wustl.edu	37	chr12	124094567	124094567	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cagacgcaggaagtggagaaCctggtgagagcgggcctccg	17	10	0	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	12	124094567	124094567	C	G	SNP	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	missense	c.633	p.N211K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	114	0	0	81	62	43.36	-	-	-	G	124094567	C	G	124094567	3	3	279	1	0	0	0	0	1	0	0	0	4404	506	18	4	659	4	DDX55	12	124094567	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	15959607	124094567	9757328	61	31163										
C1QTNF9B	0	genome.wustl.edu	37	chr13	24465799	24465799	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgaagaaggaaacttgctcaGcaccgtgagccccacagtga	11	11	1	4			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	13	24465799	24465799	G	A	SNP	C1QTNF9B	ENST00000382137	human	ensembl	69_37n	-1	known	silent	c.631	p.L211	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863	210	0	0	309	75	19.53	-	-	-	A	24465799	G	A	24465799	2	1	279	1	0	0	0	0	0	0	0	1	1990	971	34	4		4	C1QTNF9B	13	24465799	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		24465799	90704079	62	31164										
USPL1	0	genome.wustl.edu	37	chr13	31221139	31221139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cacttaatgctgcccattttGgtccatgtaacaattgcaac	6	11	0	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	13	31221139	31221139	G	T	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.1183	p.G395C	1.000	pfscan_Peptidase_C19	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	382	0	0	212	185	46.6	-	-	-	T	31221139	G	T	31221139	3	4	279	1	0	0	0	0	1	0	0	0	17189	1348	47	4	1205	4	USPL1	13	31221139	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	6755340	31221139	83948739	63	31165										
COL4A2	0	genome.wustl.edu	37	chr13	111155500	111155500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	caccagggccaccaggttctGctgctcttcctggaagcaaa	10	14	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	13	111155500	111155500	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.3910	p.A1304T	0.068	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	39	0	0	39	56	58.95	-	-	-	A	111155500	G	A	111155500	3	1	279	1	0	0	0	0	1	0	0	0	3720	1319	46	4	4072	4	COL4A2	13	111155500	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	79934361	111155500	4014378	64	31166										
NUSAP1	0	genome.wustl.edu	37	chr15	41650380	41650380	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tcatgaagctcattttaaggAaatggagtccattgatcaat	8	6	3	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	15	41650380	41650380	A	G	SNP	NUSAP1	ENST00000559596	human	ensembl	69_37n	1	known	missense	c.584	p.E195G	1.000	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804	24	0	0	13	4	23.53	-	-	-	G	41650380	A	G	41650380	3	3	279	1	0	0	0	0	1	0	0	0	10851	246	9	5	606	5	NUSAP1	15	41650380	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09		41650380	60881012	65	31167										
KIF7	0	genome.wustl.edu	37	chr15	90190208	90190209	+	Frame_Shift_Ins	INS	-	-	C													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ggccattcaggagccgcgggINScccccccagcctggccgcac							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	15	90190208	90190209	-	C	INS	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1641_1640	p.R549fs	0.002:0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	36	0	0	26	4	13.33	-	-	-	C	90190209	-	C	90190208	7	5	279	1	0	1	1	0	0	0	0	0	8361	1190	42	0	2442	0	KIF7	15	90190208	Frame_Shift_Ins	INS	-	TCGA-AN-A04D-01A-21W-A050-09	48539828	90190208	12341184	66	31168										
CACNA1H	0	genome.wustl.edu	37	chr16	1265025	1265025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gtcttcaccatcgtgtttgtCttcgaggctgcactgaagct	10	11	3	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	16	1265025	1265025	C	G	SNP	CACNA1H	ENST00000569107	human	ensembl	69_37n	1	novel	missense	c.1222	p.L408V	0.225	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_PKD_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CACNA1H	HGNC	ENSG00000196557	35	0	0	27	14	34.15	-	-	-	G	1265025	C	G	1265025	3	3	279	1	0	0	0	0	1	0	0	0	2570	900	32	2	5089	2	CACNA1H	16	1265025	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		1265025	89089728	67	31169										
KATNB1	0	genome.wustl.edu	37	chr16	57775730	57775730	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	acaagcccaactgcatcatgGtgagccccgacagctggcgg	12	14	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	16	57775730	57775730	G	A	SNP	KATNB1	ENST00000379661	human	ensembl	69_37n	1	known	splice_site	c.171+1	e2+1	1.000	-	-	-	no_errors	KATNB1	HGNC	ENSG00000140854	35	0	0	24	23	48.94	-	-	-	A	57775730	G	A	57775730	5	1	279	1	0	0	0	0	0	0	1	0	8041	1275	44	4	178	4	KATNB1	16	57775730	Splice_Site	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	56510705	57775730	32579023	68	31170										
ITGB4	0	genome.wustl.edu	37	chr17	73738675	73738675	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ccacccagacgcccggggcaTggtggagttccaggagggcg	17	13	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	17	73738675	73738675	T	A	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.2795	p.M932K	1.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	21	0	0	31	14	31.11	-	-	-	A	73738675	T	A	73738675	3	1	279	1	0	0	0	0	1	0	0	0	7951	1464	51	5	2889	5	ITGB4	17	73738675	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09		73738675	7456535	69	31171										
ENPP7	0	genome.wustl.edu	37	chr17	77705071	77705071	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cacccccaacctggacgccaTggcccgagacggggtgaagg	14	15	0	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	17	77705071	77705071	T	C	SNP	ENPP7	ENST00000328313	human	ensembl	69_37n	1	known	missense	c.170	p.M57T	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156	33	0	0	87	34	28.1	-	-	-	C	77705071	T	C	77705071	3	2	279	1	0	0	0	0	1	0	0	0	5172	1464	51	5	172	5	ENPP7	17	77705071	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	3966396	77705071	3490139	70	31172										
DLGAP1	0	genome.wustl.edu	37	chr18	3534227	3534227	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgttttcccgttcttcccgcTccatctgttgacaccacccc	5	18	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	18	3534227	3534227	T	G	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.2444	p.E815A	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	92	0	0	75	42	35.59	-	-	-	G	3534227	T	G	3534227	3	3	279	1	0	0	0	0	1	0	0	0	4595	1551	54	5	505	5	DLGAP1	18	3534227	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09		3534227	74543021	71	31173										
MAPK4	0	genome.wustl.edu	37	chr18	48255592	48255592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ggtgccaggacgccagcgagGtacagcgcgacccgcgcgcg	17	15	0	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	18	48255592	48255592	G	T	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.1132	p.V378L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	10	0	0	4	6	60	-	-	-	T	48255592	G	T	48255592	3	4	279	1	0	0	0	0	1	0	0	0	9351	1261	44	4	1150	4	MAPK4	18	48255592	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	44721365	48255592	29821656	72	31174										
CAPS	0	genome.wustl.edu	37	chr19	5914711	5914713	+	In_Frame_Del	DEL	GCG	GCG	-													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gaagtgggaccgcaatggcaGcgggacgctggatctggagg							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	5914711	5914713	GCG	-	DEL	CAPS	ENST00000222125	human	ensembl	69_37n	1	known	in_frame_del	c.221_223	p.SG74in_frame_delR	0.737:0.741:0.995	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS	HGNC	ENSG00000105519	34	0	0	17	19	52.78	-	-	-	-	5914713	GCG	-	5914711	7	5	279	1	0	1	0	1	0	0	0	0	2662	971	34	0	227	0	CAPS	19	5914711	In_Frame_Del	DEL	GCG	TCGA-AN-A04D-01A-21W-A050-09		5914711	53214272	73	31175										
MUC16	0	genome.wustl.edu	37	chr19	9065209	9065209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agaagaggagtggctacttgCtggtaatgtggaagaaacag	15	4	0	3			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	9065209	9065209	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.22237	p.A7413T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	236	0	0	179	103	36.52	-	-	-	T	9065209	C	T	9065209	3	4	279	1	0	0	0	0	1	0	0	0	10045	797	28	4	21614	4	MUC16	19	9065209	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	3150498	9065209	50063774	74	31176										
AKAP8	0	genome.wustl.edu	37	chr19	15472955	15472955	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cggtcttgtcgggcagcttgGtgcttatgaaccgcagggtc	15	10	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	15472955	15472955	G	C	SNP	AKAP8	ENST00000269701	human	ensembl	69_37n	-1	known	missense	c.1268	p.T423S	0.995	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127	67	0	0	51	40	43.96	-	-	-	C	15472955	G	C	15472955	3	2	279	1	0	0	0	0	1	0	0	0	457	1261	44	4	830	4	AKAP8	19	15472955	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	6407746	15472955	43656028	75	31177										
CCNE1	0	genome.wustl.edu	37	chr19	30313495	30313495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	aacatacagacccacagagaCagcttggatttgctggtcag	10	10	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	30313495	30313495	C	T	SNP	CCNE1	ENST00000262643	human	ensembl	69_37n	1	known	silent	c.1095	p.D365	1.000	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173	95	0	0	93	73	43.98	-	-	-	T	30313495	C	T	30313495	2	4	279	1	0	0	0	0	0	0	0	1	2949	477	17	4		4	CCNE1	19	30313495	Silent	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	14840540	30313495	28815488	76	31178										
SBSN	0	genome.wustl.edu	37	chr19	36018958	36018958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ctccttgccggtgtggctccCcatgttgctaagtccgttga	11	13	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	36018958	36018958	C	T	SNP	SBSN	ENST00000518157	human	ensembl	69_37n	-1	known	missense	c.226	p.G76R	0.045	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001	54	0	0	58	40	40.82	-	-	-	T	36018958	C	T	36018958	3	4	279	1	0	0	0	0	1	0	0	0	13951	623	22	4	1562	4	SBSN	19	36018958	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09	5705463	36018958	23110025	77	31179										
ZNF841	0	genome.wustl.edu	37	chr19	52568485	52568485	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgagcgactaatgtaagattTgccacactcattacatttat	6	8	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	52568485	52568485	T	A	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	nonsense	c.2650	p.K884*	0.753	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	249	0	0	168	138	45.1	-	-	-	A	52568485	T	A	52568485	4	1	279	1	0	0	0	0	0	1	0	0	18282	1821	63	5	128	5	ZNF841	19	52568485	Nonsense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	16549527	52568485	6560498	78	31180										
VN1R2	0	genome.wustl.edu	37	chr19	53762388	53762388	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	gatattgttctgccccacttAgtgatgaagtcacaaagtca	8	9	3	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	19	53762388	53762388	A	G	SNP	VN1R2	ENST00000341702	human	ensembl	69_37n	1	known	missense	c.760	p.S254G	0.000	pfam_Vmron_rcpt_1,pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131	65	0	0	75	11	12.79	-	-	-	G	53762388	A	G	53762388	3	3	279	1	0	0	0	0	1	0	0	0	17276	420	15	5	762	5	VN1R2	19	53762388	Missense_Mutation	SNP	A	TCGA-AN-A04D-01A-21W-A050-09	1193903	53762388	5366595	79	31181										
CRNKL1	0	genome.wustl.edu	37	chr20	20033188	20033188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tggtgaccaggctgcgcgtcCtccttgcggcagcgcgtgga	16	13	0	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	20	20033188	20033188	C	T	SNP	CRNKL1	ENST00000496549	human	ensembl	69_37n	-1	known	missense	c.152	p.R51K	0.813	NULL	NULL	-	no_errors	CRNKL1	HGNC	ENSG00000101343	39	0	0	28	21	42.86	-	-	-	T	20033188	C	T	20033188	3	4	279	1	0	0	0	0	1	0	0	0	3921	680	24	4	2320	4	CRNKL1	20	20033188	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		20033188	42992332	80	31182										
SLC35C2	0	genome.wustl.edu	37	chr20	44983581	44983582	+	In_Frame_Ins	INS	-	-	GCA													0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	agtggctgcaggtggaacatINSggtgtcgatgggattctgga							TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	20	44983581	44983582	-	GCA	INS	SLC35C2	ENST00000543605	human	ensembl	69_37n	-1	known	in_frame_ins	c.688_687	p.229in_frame_insC	1.000:1.000	pfam_DUF250,pfam_UAA	pfam_DUF250,pfam_UAA	-	no_errors	SLC35C2	HGNC	ENSG00000080189	88	0	0	112	40	26.32	-	-	-	GCA	44983582	-	GCA	44983581	7	5	279	1	0	1	1	0	0	0	0	0	14669	1464	51	0	512	0	SLC35C2	20	44983581	In_Frame_Ins	INS	-	TCGA-AN-A04D-01A-21W-A050-09	24950393	44983581	18041939	81	31183										
LSM14B	0	genome.wustl.edu	37	chr20	60708435	60708435	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tcttcgtggccgcagttctcGgggcggattccgaggaggca	16	11	2	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	20	60708435	60708435	G	C	SNP	LSM14B	ENST00000253001	human	ensembl	69_37n	1	known	missense	c.1076	p.R359P	0.944	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657	108	0	0	15	166	91.21	-	-	-	C	60708435	G	C	60708435	3	2	279	1	0	0	0	0	1	0	0	0	9121	1116	39	3	1106	3	LSM14B	20	60708435	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	15724854	60708435	2317085	82	31184										
LCA5L	0	genome.wustl.edu	37	chr21	40794925	40794925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tatttttttgtcatttgcgtCcatttttgttgtgataatag	7	4	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	21	40794925	40794925	C	A	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.814	p.D272Y	1.000	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	114	0	0	61	56	47.86	-	-	-	A	40794925	C	A	40794925	3	1	279	1	0	0	0	0	1	0	0	0	8711	855	30	2	1222	2	LCA5L	21	40794925	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		40794925	7334970	83	31185										
KRTAP10-11	0	genome.wustl.edu	37	chr21	46066670	46066670	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cctccccctgccagcaggccTgctgtgtgcctgtctgctgc	11	18	1	0			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	21	46066670	46066670	T	G	SNP	KRTAP10-11	ENST00000334670	human	ensembl	69_37n	1	known	missense	c.295	p.C99G	0.874	NULL	NULL	-	no_errors	KRTAP10-11	HGNC	ENSG00000243489	150	0	0	120	77	39.09	-	-	-	G	46066670	T	G	46066670	3	3	279	1	0	0	0	0	1	0	0	0	8560	1580	55	5	297	5	KRTAP10-11	21	46066670	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	5271745	46066670	2063225	84	31186										
TCN2	0	genome.wustl.edu	37	chr22	31019054	31019054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	cagcttctccgagaccccaaCaccccactgttgcaaggtga	8	16	1	2			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	22	31019054	31019054	C	A	SNP	TCN2	ENST00000215838	human	ensembl	69_37n	1	known	missense	c.1206	p.N402K	0.960	NULL	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	TCN2	HGNC	ENSG00000185339	29	0	0	30	29	48.33	-	-	-	A	31019054	C	A	31019054	3	1	279	1	0	0	0	0	1	0	0	0	15802	477	17	4	1236	4	TCN2	22	31019054	Missense_Mutation	SNP	C	TCGA-AN-A04D-01A-21W-A050-09		31019054	20285512	85	31187										
UBA1	0	genome.wustl.edu	37	chrX	47070446	47070446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	ttctcctagcccctgcatctGgactatgtgatggctgctgc	10	13	2	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	X	47070446	47070446	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.2286	p.L762	1.000	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	148	0	0	84	75	47.17	-	-	-	A	47070446	G	A	47070446	2	1	279	1	0	0	0	0	0	0	0	1	16924	1335	47	4		4	UBA1	23	47070446	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09		47070446	108200114	86	31188										
TCEAL5	0	genome.wustl.edu	37	chrX	102528976	102528976	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	aatggatcctgtacatctctTtgcatccaatgaaaaccacc	5	12	1	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	X	102528976	102528976	T	A	SNP	TCEAL5	ENST00000372680	human	ensembl	69_37n	-1	known	missense	c.516	p.Q172H	0.901	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL5	HGNC	ENSG00000204065	1348	0	0	1047	711	40.37	-	-	-	A	102528976	T	A	102528976	3	1	279	1	0	0	0	0	1	0	0	0	15769	1838	64	5	108	5	TCEAL5	23	102528976	Missense_Mutation	SNP	T	TCGA-AN-A04D-01A-21W-A050-09	55458530	102528976	52741584	87	31189										
IL1RAPL2	0	genome.wustl.edu	37	chrX	104961445	104961445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tactggatgaaaggagaaaaGtttattgaagaactggcagg	13	3	0	4			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	X	104961445	104961445	G	A	SNP	IL1RAPL2	ENST00000344799	human	ensembl	69_37n	1	known	silent	c.858	p.K286	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_Interleukin-1_rcpt_II	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108	560	0	0	276	102	26.84	-	-	-	A	104961445	G	A	104961445	2	1	279	1	0	0	0	0	0	0	0	1	7716	1020	36	4		4	IL1RAPL2	23	104961445	Silent	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	2432469	104961445	50309115	88	31190										
VAMP7	0	genome.wustl.edu	37	chrX	155169387	155169387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0561797752808989	5	0.904872247913239	0.952929558920342	1.41257793439957	0.64036866359447	1	1	0	tgtcaccttcaaaactaccaGcagaaatcttgctcgagcca	6	13	3	1			TCGA-AN-A04D-01A-21W-A050-09	TCGA-AN-A04D-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9407735f-19e3-49d0-b783-cd9672dfa6a9	f491c9e0-384e-4dc9-973f-d4513f9acef9	X	155169387	155169387	G	T	SNP	VAMP7	ENST00000262640	human	ensembl	69_37n	1	known	missense	c.456	p.Q152H	1.000	NULL	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	VAMP7	HGNC	ENSG00000124333	1724	2	0.12	1829	764	29.45	-	-	-	T	155169387	G	T	155169387	3	4	279	1	0	0	0	0	1	0	0	0	17214	971	34	4	546	4	VAMP7	23	155169387	Missense_Mutation	SNP	G	TCGA-AN-A04D-01A-21W-A050-09	50207942	155169387	101173	89	31191										
NFYC	0	genome.wustl.edu	37	chr1	41236181	41236182	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tcttccctgcccaccacacaINSccccccctcacaccgggctg							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	41236181	41236182	-	C	INS	NFYC	ENST00000308733	human	ensembl	69_37n	1	known	frame_shift_ins	c.1058_1059	p.S356fs	0.002:0.000	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136	31	0	0	18	2	10	-	-	-	C	41236182	-	C	41236181	7	5	280	1	0	1	1	0	0	0	0	0	10463	174	6	0		0	NFYC	1	41236181	Frame_Shift_Ins	INS	-	TCGA-AN-A0AJ-01A-11W-A019-09		41236181	208014440	1	31192										
TPR	0	genome.wustl.edu	37	chr1	186303578	186303578	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgggtgttgacttatttccAgccatagctgcagctgtcac	10	11	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	186303578	186303578	A	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	silent	c.5061	p.A1687	0.997	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	149	0	0	201	42	17.28	-	-	-	T	186303578	A	T	186303578	2	4	280	1	0	0	0	0	0	0	0	1	16512	175	7	5		5	TPR	1	186303578	Silent	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	145067397	186303578	62947043	2	31193										
URB2	0	genome.wustl.edu	37	chr1	229783409	229783409	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ttcagcatccttctcactgtCcctttggaccatctgaagcc	6	15	3	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	229783409	229783409	C	G	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	silent	c.4059	p.V1353	0.982	pfam_Urb2/Npa2_C	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	103	0	0	163	25	13.3	-	-	-	G	229783409	C	G	229783409	2	3	280	1	0	0	0	0	0	0	0	1	17122	842	30	2		2	URB2	1	229783409	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	43479831	229783409	19467212	3	31194										
RYR2	0	genome.wustl.edu	37	chr1	237837413	237837413	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	taggaggaggaaaccatcctCtgctggtgccctatgataca	11	10	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	237837413	237837413	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.8602	p.L2868M	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	69	0	0	294	44	13.02	-	-	-	A	237837413	C	A	237837413	3	1	280	1	0	0	0	0	1	0	0	0	13855	912	32	2	8842	2	RYR2	1	237837413	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	8054004	237837413	11413208	4	31195										
FMN2	0	genome.wustl.edu	37	chr1	240601396	240601396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ggcatatttcttcatgaaacCaaaacttggagagaaggagg	11	6	2	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	240601396	240601396	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4946	p.P1649L	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	232	0	0	401	46	10.29	-	-	-	T	240601396	C	T	240601396	3	4	280	1	0	0	0	0	1	0	0	0	5996	594	21	4	5008	4	FMN2	1	240601396	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	2763983	240601396	8649225	5	31196										
RGS7	0	genome.wustl.edu	37	chr1	240990397	240990397	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cacaacaaatgacagttttaCcttccgtgttttgtgggggt	10	8	0	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	240990397	240990397	C	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	splice_site	c.684+1	e9+1	1.000	-	-	-	no_errors	RGS7	HGNC	ENSG00000182901	24	0	0	89	21	19.09	-	-	-	A	240990397	C	A	240990397	5	1	280	1	0	0	0	0	0	0	1	0	13394	521	18	4	814	4	RGS7	1	240990397	Splice_Site	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	389001	240990397	8260224	6	31197										
EML4	0	genome.wustl.edu	37	chr2	42472824	42472824	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tgaaaaaatcagtctcaagtAaaggtaattgtgttgtaaag	9	3	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	42472824	42472824	A	T	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	nonsense	c.205	p.K69*	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	92	0	0	96	25	20.66	-	-	-	T	42472824	A	T	42472824	4	4	280	1	0	0	0	0	0	1	0	0	5136	363	13	5	211	5	EML4	2	42472824	Nonsense_Mutation	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09		42472824	200726549	7	31198										
PLEKHH2	0	genome.wustl.edu	37	chr2	43919673	43919673	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gtacaagttatggaagataaAttaaaagcagctaatattca	7	4	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	43919673	43919673	A	G	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	silent	c.207	p.K69	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	89	0	0	94	38	28.79	-	-	-	G	43919673	A	G	43919673	2	3	280	1	0	0	0	0	0	0	0	1	12151	98	4	5		5	PLEKHH2	2	43919673	Silent	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	1446849	43919673	199279700	8	31199										
ALMS1	0	genome.wustl.edu	37	chr2	73646388	73646388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctggaggagggcatattgacGcaatcagaaaatcaagtaaa	11	6	2	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	73646388	73646388	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	silent	c.588	p.T196	0.009	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	358	1	0.28	776	109	12.32	-	-	-	A	73646388	G	A	73646388	2	1	280	1	0	0	0	0	0	0	0	1	535	1074	38	1		1	ALMS1	2	73646388	Silent	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	29726715	73646388	169552985	9	31200										
IL1R2	0	genome.wustl.edu	37	chr2	102644698	102644698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cttcccacagcctcctccacGttctcctggggcattgtgct	8	17	1	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	102644698	102644698	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	silent	c.1041	p.T347	0.485	pfscan_Ig-like,prints_Interleukin-1_rcpt_II	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	83	0	0	95	25	20.83	-	-	-	A	102644698	G	A	102644698	2	1	280	1	0	0	0	0	0	0	0	1	7713	1132	40	1		1	IL1R2	2	102644698	Silent	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	28998310	102644698	140554675	10	31201										
KCNJ3	0	genome.wustl.edu	37	chr2	155555500	155555500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	agccgctacctctcggacctCttcaccacgctggtggacct	9	17	3	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	155555500	155555500	C	T	SNP	KCNJ3	ENST00000295101	human	ensembl	69_37n	1	known	silent	c.213	p.L71	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ3	HGNC	ENSG00000162989	22	0	0	26	15	36.59	-	-	-	T	155555500	C	T	155555500	2	4	280	1	0	0	0	0	0	0	0	1	8106	900	32	2		2	KCNJ3	2	155555500	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	52910802	155555500	87643873	11	31202										
PMS1	0	genome.wustl.edu	37	chr2	190742124	190742124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	agtgtgttcatggtcgcccaTtttttcatcatttaacctat	6	9	3	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	190742124	190742124	T	G	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.2761	p.F921V	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	143	0	0	242	41	14.49	-	-	-	G	190742124	T	G	190742124	3	3	280	1	0	0	0	0	1	0	0	0	12216	1493	52	5	2807	5	PMS1	2	190742124	Missense_Mutation	SNP	T	TCGA-AN-A0AJ-01A-11W-A019-09	35186624	190742124	52457249	12	31203										
COL6A3	0	genome.wustl.edu	37	chr2	238280902	238280902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	caaccagcctctctatgaggGtgcgaacgtactggaactca	10	12	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	238280902	238280902	G	T	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.3758	p.T1253N	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	84	0	0	49	44	46.81	-	-	-	T	238280902	G	T	238280902	3	4	280	1	0	0	0	0	1	0	0	0	3731	1261	44	4	5966	4	COL6A3	2	238280902	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	47538778	238280902	4918471	13	31204										
MYRIP	0	genome.wustl.edu	37	chr3	40231954	40231954	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cgggatctagacacacatcaGgtaatggaagtgcatgcgtg	13	8	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	40231954	40231954	G	C	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.1665	p.Q555H	1.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	101	0	0	60	20	25	-	-	-	C	40231954	G	C	40231954	3	2	280	1	0	0	0	0	1	0	0	0	10172	1014	35	4	1699	4	MYRIP	3	40231954	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09		40231954	157790476	14	31205										
ZNF445	0	genome.wustl.edu	37	chr3	44496857	44496857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gccctgaagactcatggtagCgaagctgtctgaagagctgg	14	9	2	4			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	44496857	44496857	C	T	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.185	p.R62H	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	122	0	0	76	73	48.99	-	-	-	T	44496857	C	T	44496857	3	4	280	1	0	0	0	0	1	0	0	0	18014	768	27	1	2934	1	ZNF445	3	44496857	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	4264903	44496857	153525573	15	31206										
OR5H2	0	genome.wustl.edu	37	chr3	98002278	98002278	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctaacataatacatcattttTactgtgatattataccactg	3	8	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	98002278	98002278	T	G	SNP	OR5H2	ENST00000355273	human	ensembl	69_37n	1	known	missense	c.547	p.Y183D	0.851	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938	226	0	0	145	145	50	-	-	-	G	98002278	T	G	98002278	3	3	280	1	0	0	0	0	1	0	0	0	11235	1754	61	5	549	5	OR5H2	3	98002278	Missense_Mutation	SNP	T	TCGA-AN-A0AJ-01A-11W-A019-09	53505421	98002278	100020152	16	31207										
DNAJC13	0	genome.wustl.edu	37	chr3	132193880	132193880	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gagagcatttaatattgacaGagaacttggaagtgcaaatg	11	4	0	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	132193880	132193880	G	C	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.2396	p.R799T	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	47	0	0	111	16	12.6	-	-	-	C	132193880	G	C	132193880	3	2	280	1	0	0	0	0	1	0	0	0	4667	942	33	2	2478	2	DNAJC13	3	132193880	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	34191602	132193880	65828550	17	31208										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	196	0	0	237	119	33.43	-	-	-	G	178952085	A	G	178952085	3	3	280	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	46758205	178952085	19070345	18	31209										
TTC14	0	genome.wustl.edu	37	chr3	180327846	180327846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctataaaacccaagcaggtaGtagcaaaacagaaaagccat	7	9	0	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	180327846	180327846	G	A	SNP	TTC14	ENST00000296015	human	ensembl	69_37n	1	known	missense	c.1829	p.S610N	1.000	NULL	pfam_TPR-1,superfamily_NA-bd_OB-fold-like,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728	215	0	0	311	89	22.25	-	-	-	A	180327846	G	A	180327846	3	1	280	1	0	0	0	0	1	0	0	0	16778	1029	36	4	1905	4	TTC14	3	180327846	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	1375761	180327846	17694584	19	31210										
HRG	0	genome.wustl.edu	37	chr3	186383974	186383974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gctaccttttccaattgctgCggattgctgatgcccacttg	9	12	0	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	186383974	186383974	C	T	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	missense	c.154	p.R52W	1.000	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	86	0	0	81	15	15.62	-	-	-	T	186383974	C	T	186383974	3	4	280	1	0	0	0	0	1	0	0	0	7405	759	27	1	156	1	HRG	3	186383974	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	6056128	186383974	11638456	20	31211										
CEP135	0	genome.wustl.edu	37	chr4	56819315	56819315	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgctgtgaaagctgaaaaaGaaagtgccaattttgatttt	9	5	0	4			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	56819315	56819315	G	C	SNP	CEP135	ENST00000257287	human	ensembl	69_37n	1	known	missense	c.178	p.E60Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP135	HGNC	ENSG00000174799	14	0	0	37	8	17.78	-	-	-	C	56819315	G	C	56819315	3	2	280	1	0	0	0	0	1	0	0	0	3276	943	33	2	184	2	CEP135	4	56819315	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09		56819315	134334961	21	31212										
FRAS1	0	genome.wustl.edu	37	chr4	79391188	79391188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	atcctcccggtagatgatggCacgcctagaattgtcaccaa	9	12	1	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	79391188	79391188	C	A	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	missense	c.1999	p.H667N	0.997	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	130	0	0	123	28	18.54	-	-	-	A	79391188	C	A	79391188	3	1	280	1	0	0	0	0	1	0	0	0	6090	697	25	4	7591	4	FRAS1	4	79391188	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	22571873	79391188	111763088	22	31213										
HADH	0	genome.wustl.edu	37	chr4	108948850	108948850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gtctcccaaaacaggacactCctgggtttattgtgaaccgc	9	12	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	108948850	108948850	C	T	SNP	HADH	ENST00000403312	human	ensembl	69_37n	1	known	missense	c.643	p.P215S	1.000	NULL	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,pfam_AlaDH/PNT_NAD(H)-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_UDP-Glc/GDP-Man_DH_N,superfamily_6-PGluconate_DH_C-like	-	no_errors	HADH	HGNC	ENSG00000138796	248	0	0	618	109	14.97	-	-	-	T	108948850	C	T	108948850	3	4	280	1	0	0	0	0	1	0	0	0	6993	855	30	2	665	2	HADH	4	108948850	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	29557662	108948850	82205426	23	31214										
CLCN3	0	genome.wustl.edu	37	chr4	170610225	170610225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ggattaatagacattgctgcCgattggatgactgacctaaa	10	7	0	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	170610225	170610225	C	T	SNP	CLCN3	ENST00000347613	human	ensembl	69_37n	1	known	silent	c.450	p.A150	0.929	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572	50	0	0	70	133	65.2	-	-	-	T	170610225	C	T	170610225	2	4	280	1	0	0	0	0	0	0	0	1	3494	639	23	1		1	CLCN3	4	170610225	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	61661375	170610225	20544051	24	31215										
CDKN2AIP	0	genome.wustl.edu	37	chr4	184367943	184367943	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cacttcccaggtagctgcatCactactagcttccaagagca	7	14	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	184367943	184367943	C	T	SNP	CDKN2AIP	ENST00000504169	human	ensembl	69_37n	1	known	missense	c.1106	p.S369L	0.679	NULL	pfam_DUF3469,pfscan_Ds-RNA-bd	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564	38	0	0	132	26	16.35	-	-	-	T	184367943	C	T	184367943	3	4	280	1	0	0	0	0	1	0	0	0	3191	838	29	2	1116	2	CDKN2AIP	4	184367943	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	13757718	184367943	6786333	25	31216										
PDE4D	0	genome.wustl.edu	37	chr5	58271593	58271593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	actcctccattatccggtccGtccactggcggtacagctgg	10	15	0	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	58271593	58271593	G	A	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.1904	p.T635M	1.000	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	125	0	0	179	41	18.64	-	-	-	A	58271593	G	A	58271593	3	1	280	1	0	0	0	0	1	0	0	0	11715	1145	40	1	533	1	PDE4D	5	58271593	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09		58271593	122643667	26	31217										
SEC24A	0	genome.wustl.edu	37	chr5	134041046	134041046	+	Frame_Shift_Del	DEL	T	T	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gaattcgtgttcatactttgTgtttgccagtagtttcgact							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	134041046	134041046	T	-	DEL	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	frame_shift_del	c.2470	p.C824fs	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	164	0	0	222	59	20.42	-	-	-	-	134041046	T	-	134041046	7	5	280	1	0	1	0	1	0	0	0	0	14082	1696	59	0	2536	0	SEC24A	5	134041046	Frame_Shift_Del	DEL	T	TCGA-AN-A0AJ-01A-11W-A019-09	75769453	134041046	46874214	27	31218										
PCDHB14	0	genome.wustl.edu	37	chr5	140604653	140604653	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tggactacgaggccctacagGagttcgagtttcgcgtgggc	15	10	0	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	140604653	140604653	G	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	nonsense	c.1576	p.E526*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	18	0	0	29	18	38.3	-	-	-	T	140604653	G	T	140604653	4	4	280	1	0	0	0	0	0	1	0	0	11612	1175	41	2	1578	2	PCDHB14	5	140604653	Nonsense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	6563607	140604653	40310607	28	31219										
AFAP1L1	0	genome.wustl.edu	37	chr5	148702185	148702185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccaggacgaggagcccgagcGccccacaggggcccaggtga	16	15	0	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	148702185	148702185	G	A	SNP	AFAP1L1	ENST00000296721	human	ensembl	69_37n	1	known	missense	c.1715	p.R572H	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510	11	0	0	7	7	50	-	-	-	A	148702185	G	A	148702185	3	1	280	1	0	0	0	0	1	0	0	0	354	1087	38	1	1773	1	AFAP1L1	5	148702185	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	8097532	148702185	32213075	29	31220										
LARP1	0	genome.wustl.edu	37	chr5	154169889	154169890	+	Frame_Shift_Del	DEL	CT	CT	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cttcttgttcccacagaacaCtctgctccagccaaggtggt							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	154169889	154169890	CT	-	DEL	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	frame_shift_del	c.210_211	p.S71fs	0.980:0.979	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	41	0	0	56	9	13.85	-	-	-	-	154169890	CT	-	154169889	7	5	280	1	0	1	0	1	0	0	0	0	8682	564	20	0	216	0	LARP1	5	154169889	Frame_Shift_Del	DEL	CT	TCGA-AN-A0AJ-01A-11W-A019-09	5467704	154169889	26745371	30	31221										
ABCF1	0	genome.wustl.edu	37	chr6	30558114	30558114	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	caataacctggacatagagtCtattgatgctctaggggagg	12	7	2	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	30558114	30558114	C	T	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.2330	p.S777F	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	338	0	0	326	191	36.87	-	-	-	T	30558114	C	T	30558114	3	4	280	1	0	0	0	0	1	0	0	0	65	913	32	2	2424	2	ABCF1	6	30558114	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		30558114	140556953	31	31222										
EHMT2	0	genome.wustl.edu	37	chr6	31864886	31864887	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctacctcttcctctgtggggINSccccccccttccgcggcctc							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	31864886	31864887	-	C	INS	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	frame_shift_ins	c.94_93	p.P31fs	0.000:0.001	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	8	0	0	22	4	15.38	-	-	-	C	31864887	-	C	31864886	7	5	280	1	0	1	1	0	0	0	0	0	5019	1218	42	0		0	EHMT2	6	31864886	Frame_Shift_Ins	INS	-	TCGA-AN-A0AJ-01A-11W-A019-09	1306772	31864886	139250181	32	31223										
DSE	0	genome.wustl.edu	37	chr6	116756906	116756906	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tctggaaaactggggggacgTgcaatatatgacattgtcca	12	7	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	116756906	116756906	T	C	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	silent	c.1332	p.R444	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	99	0	0	97	24	19.83	-	-	-	C	116756906	T	C	116756906	2	2	280	1	0	0	0	0	0	0	0	1	4809	1683	59	5		5	DSE	6	116756906	Silent	SNP	T	TCGA-AN-A0AJ-01A-11W-A019-09	84892020	116756906	54358161	33	31224										
THEMIS	0	genome.wustl.edu	37	chr6	128222041	128222041	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cctgggtagggtcctgaggtCaagggagtggacgaattctt	16	7	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	128222041	128222041	C	G	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.37	p.D13H	0.996	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	271	0	0	630	110	14.82	-	-	-	G	128222041	C	G	128222041	3	3	280	1	0	0	0	0	1	0	0	0	15955	826	29	2	2033	2	THEMIS	6	128222041	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	11465135	128222041	42893026	34	31225										
ZNF498	0	genome.wustl.edu	37	chr7	99227257	99227258	+	Frame_Shift_Del	DEL	CA	CA	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	aaaccttcagccagagacacCacctggaggtgcaccagcgc							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	99227257	99227258	CA	-	DEL	ZNF498	ENST00000334715	human	ensembl	69_37n	1	known	frame_shift_del	c.1249_1250	p.H417fs	0.986:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	89	0	0	76	32	29.36	-	-	-	-	99227258	CA	-	99227257	7	5	280	1	0	1	0	1	0	0	0	0	18043	594	21	0	1267	0	ZNF498	7	99227257	Frame_Shift_Del	DEL	CA	TCGA-AN-A0AJ-01A-11W-A019-09		99227257	59911406	35	31226	255	2								
ZNF498	0	genome.wustl.edu	37	chr7	99227260	99227260	+	Missense_Mutation	SNP	C	C	G													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccttcagccagagacaccacCtggaggtgcaccagcgcagc							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	99227260	99227260	C	G	SNP	ZNF498	ENST00000334715	human	ensembl	69_37n	1	known	missense	c.1252	p.L418V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	91	0	0	72	36	33.33	-	-	-	G	99227260	C	G	99227260	3	3	280	1	0	0	0	0	1	0	0	0	18043	680	24	4	1270	4	ZNF498	7	99227260	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	3	99227260	59911403	36	31227	255	2								
RELN	0	genome.wustl.edu	37	chr7	103141338	103141338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gattgcccactgcatgtctgAgtacttctgatagaacctaa	8	10	2	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	103141338	103141338	A	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.8521	p.S2841A	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	294	0	0	192	76	28.36	-	-	-	C	103141338	A	C	103141338	3	2	280	1	0	0	0	0	1	0	0	0	13303	304	11	5	1913	5	RELN	7	103141338	Missense_Mutation	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	3914078	103141338	55997325	37	31228										
PPP1R3A	0	genome.wustl.edu	37	chr7	113519206	113519206	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tgtttatgctgtgggctattAtcctgatcttcagaattaat	8	6	2	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	113519206	113519206	A	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	silent	c.1941	p.D647	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	625	1	0.16	421	199	32.1	-	-	-	G	113519206	A	G	113519206	2	3	280	1	0	0	0	0	0	0	0	1	12448	446	16	5		5	PPP1R3A	7	113519206	Silent	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	10377868	113519206	45619457	38	31229										
PXDNL	0	genome.wustl.edu	37	chr8	52370199	52370199	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	atcatcaaacacattaagtcGagtatcatcttccaaatcca	3	11	4	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	8	52370199	52370199	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	nonsense	c.841	p.R281*	0.679	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	419	0	0	751	130	14.76	-	-	-	A	52370199	G	A	52370199	4	1	280	1	0	0	0	0	0	1	0	0	12931	1066	37	1	3610	1	PXDNL	8	52370199	Nonsense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09		52370199	93993823	39	31230										
RAD54B	0	genome.wustl.edu	37	chr8	95423537	95423537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgctacttctttaggagccGaatgaactacaattaaaaaa	6	8	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	8	95423537	95423537	G	A	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.311	p.S104L	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	167	0	0	576	152	20.85	-	-	-	A	95423537	G	A	95423537	3	1	280	1	0	0	0	0	1	0	0	0	13075	1059	37	1	2469	1	RAD54B	8	95423537	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	43053338	95423537	50940485	40	31231										
FREM1	0	genome.wustl.edu	37	chr9	14824844	14824844	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gttattgtgtagaccagctcCctgtcatatgattctgaatc	8	9	2	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	14824844	14824844	C	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.2031	p.R677S	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	85	0	0	61	18	22.78	-	-	-	A	14824844	C	A	14824844	3	1	280	1	0	0	0	0	1	0	0	0	6093	622	22	4	4669	4	FREM1	9	14824844	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		14824844	126388587	41	31232										
TOPORS	0	genome.wustl.edu	37	chr9	32544087	32544087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cacagaatggaaaatagaatCaaagggctgtttacatagtg	10	5	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	32544087	32544087	C	G	SNP	TOPORS	ENST00000360538	human	ensembl	69_37n	-1	known	missense	c.436	p.D146H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579	88	0	0	109	68	38.42	-	-	-	G	32544087	C	G	32544087	3	3	280	1	0	0	0	0	1	0	0	0	16466	826	29	2	2705	2	TOPORS	9	32544087	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	17719243	32544087	108669344	42	31233										
PAPPA	0	genome.wustl.edu	37	chr9	119144714	119144714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ttgtgatgccatcaacaaccGagccttttgcaactatgacg	8	11	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	119144714	119144714	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.4718	p.R1573Q	1.000	pfam_Notch_dom,superfamily_Notch_dom,smart_Notch_dom	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	208	0	0	170	55	24.44	-	-	-	A	119144714	G	A	119144714	3	1	280	1	0	0	0	0	1	0	0	0	11505	1058	37	1	4800	1	PAPPA	9	119144714	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	86600627	119144714	22068717	43	31234										
NEK6	0	genome.wustl.edu	37	chr9	127083782	127083782	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	aagtatttggactcgtttatCgaagacaacgagctgaacat	9	7	0	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	127083782	127083782	C	T	SNP	NEK6	ENST00000373600	human	ensembl	69_37n	1	known	silent	c.441	p.I147	0.906	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408	43	0	0	32	9	21.95	-	-	-	T	127083782	C	T	127083782	2	4	280	1	0	0	0	0	0	0	0	1	10400	874	31	1		1	NEK6	9	127083782	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	7939068	127083782	14129649	44	31235										
TSC1	0	genome.wustl.edu	37	chr9	135771828	135771828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctggctctcgctcttattacGaaataactctcgagccttca	6	13	4	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	135771828	135771828	G	A	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.3289	p.R1097C	1.000	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	84	0	0	69	26	27.37	-	-	-	A	135771828	G	A	135771828	3	1	280	1	0	0	0	0	1	0	0	0	16701	1058	37	1	209	1	TSC1	9	135771828	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	8688046	135771828	5441603	45	31236										
CACNA1B	0	genome.wustl.edu	37	chr9	140953542	140953542	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cccgggcagttctatgatgcAccctatgagtacgagctgat	11	11	1	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	140953542	140953542	A	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	silent	c.4488	p.A1496	0.007	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	14	0	0	15	6	27.27	-	-	-	T	140953542	A	T	140953542	2	4	280	1	0	0	0	0	0	0	0	1	2564	146	6	5		5	CACNA1B	9	140953542	Silent	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09	5181714	140953542	259889	46	31237										
CDHR1	0	genome.wustl.edu	37	chr10	85956341	85956341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tcagctttgaccccagcactAgaagcgtcttttctgttgac	8	12	3	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	85956341	85956341	A	G	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	missense	c.232	p.R78G	0.979	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	35	0	0	46	35	43.21	-	-	-	G	85956341	A	G	85956341	3	3	280	1	0	0	0	0	1	0	0	0	3147	412	15	5	242	5	CDHR1	10	85956341	Missense_Mutation	SNP	A	TCGA-AN-A0AJ-01A-11W-A019-09		85956341	49578406	47	31238										
KCNK18	0	genome.wustl.edu	37	chr10	118969045	118969045	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cccgtcaccaggcttggcaaGtacttgtgcatgctctatgc	10	13	2	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	118969045	118969045	G	C	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.390	p.K130N	0.738	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	161	0	0	113	58	33.92	-	-	-	C	118969045	G	C	118969045	3	2	280	1	0	0	0	0	1	0	0	0	8119	1020	36	4	400	4	KCNK18	10	118969045	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09	33012704	118969045	16565702	48	31239										
PTPRE	0	genome.wustl.edu	37	chr10	129866449	129866449	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgcacttcaccagctggccCgacttcggagtgccttttac	9	15	1	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	129866449	129866449	C	T	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	silent	c.906	p.P302	0.710	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	56	0	0	24	15	37.5	-	-	-	T	129866449	C	T	129866449	2	4	280	1	0	0	0	0	0	0	0	1	12883	639	23	1		1	PTPRE	10	129866449	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	10897404	129866449	5668298	49	31240										
ABCC8	0	genome.wustl.edu	37	chr11	17464360	17464360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gcggaagatgttctcccaggCgtacagcttcagcagcttga	12	11	2	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	17464360	17464360	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.1537	p.A513T	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	118	0	0	70	53	43.09	-	-	-	T	17464360	C	T	17464360	3	4	280	1	0	0	0	0	1	0	0	0	58	768	27	1	3328	1	ABCC8	11	17464360	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		17464360	117542156	50	31241										
OR5D16	0	genome.wustl.edu	37	chr11	55607024	55607024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cctctactgtgtacccaactCcaaaaactccaggcacacag	5	16	1	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	55607024	55607024	C	T	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.797	p.S266F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	353	0	0	450	64	12.45	-	-	-	T	55607024	C	T	55607024	3	4	280	1	0	0	0	0	1	0	0	0	11229	855	30	2	799	2	OR5D16	11	55607024	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	38142664	55607024	79399492	51	31242										
CCDC83	0	genome.wustl.edu	37	chr11	85593657	85593659	+	In_Frame_Del	DEL	TGT	TGT	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccagttgtaacaagagaggaTgttgaagaagcgatgaagga							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	85593657	85593659	TGT	-	DEL	CCDC83	ENST00000280245	human	ensembl	69_37n	1	known	in_frame_del	c.282_284	p.V95in_frame_del	0.558:0.937:0.949	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676	194	0	0	181	242	54.75	-	-	-	-	85593659	TGT	-	85593657	7	5	280	1	0	1	0	1	0	0	0	0	2884	1461	51	0	292	0	CCDC83	11	85593657	In_Frame_Del	DEL	TGT	TCGA-AN-A0AJ-01A-11W-A019-09	29986633	85593657	49412859	52	31243										
ITPR2	0	genome.wustl.edu	37	chr12	26647218	26647218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccttctttatccagcagacaCtgaatgtctgacattgatat	6	10	2	4			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	26647218	26647218	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.5238	p.Q1746	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	249	0	0	460	71	13.37	-	-	-	T	26647218	C	T	26647218	2	4	280	1	0	0	0	0	0	0	0	1	7975	564	20	4		4	ITPR2	12	26647218	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		26647218	107204677	53	31244										
FAM186B	0	genome.wustl.edu	37	chr12	49993820	49993820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgctccttttctagctggaCccatctccgctgttgctccc	7	17	2	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	49993820	49993820	C	T	SNP	FAM186B	ENST00000257894	human	ensembl	69_37n	-1	known	missense	c.1603	p.V535I	0.000	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436	236	1	0.42	227	122	34.96	-	-	-	T	49993820	C	T	49993820	3	4	280	1	0	0	0	0	1	0	0	0	5553	507	18	4	1094	4	FAM186B	12	49993820	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	23346602	49993820	83858075	54	31245										
RFX4	0	genome.wustl.edu	37	chr12	107048049	107048049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	cagagggggtctgcatccctCgcagtgccctctatatgcat	11	13	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	107048049	107048049	C	T	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.262	p.R88C	0.954	pfam_DNA-bd_RFX	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	201	0	0	185	62	25.1	-	-	-	T	107048049	C	T	107048049	3	4	280	1	0	0	0	0	1	0	0	0	13348	884	31	1	323	1	RFX4	12	107048049	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	57054229	107048049	26803846	55	31246										
KSR2	0	genome.wustl.edu	37	chr12	117922315	117922315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gacgttctttgacttgaggtCcttgtgtaggattcccttgg	12	8	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	117922315	117922315	C	T	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	missense	c.2356	p.D786N	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	74	0	0	33	46	58.23	-	-	-	T	117922315	C	T	117922315	3	4	280	1	0	0	0	0	1	0	0	0	8636	855	30	2	516	2	KSR2	12	117922315	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	10874266	117922315	15929580	56	31247										
SERF2	0	genome.wustl.edu	37	chr15	44085898	44085898	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctcccagtgccccatcatctCtacccccagggactcggaga	8	18	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	44085898	44085898	C	G	SNP	SERF2	ENST00000409960	human	ensembl	69_37n	1	putative	missense	c.241	p.L81V	1.000	NULL	pfam_Uncharacterised_SERF	-	no_errors	SERF2	HGNC	ENSG00000140264	108	0	0	91	34	27.2	-	-	-	G	44085898	C	G	44085898	3	3	280	1	0	0	0	0	1	0	0	0	14164	928	32	2		2	SERF2	15	44085898	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		44085898	58445494	57	31248										
PRTG	0	genome.wustl.edu	37	chr15	55970187	55970187	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	agatccttggctattctcagCcatgcactgataaatagcat	7	10	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	55970187	55970187	C	A	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.1189	p.A397S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	88	0	0	62	17	21.52	-	-	-	A	55970187	C	A	55970187	3	1	280	1	0	0	0	0	1	0	0	0	12718	739	26	4	2315	4	PRTG	15	55970187	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	11884289	55970187	46561205	58	31249										
ZNF609	0	genome.wustl.edu	37	chr15	64915059	64915059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tttccacaccagcagtgctgCcaatacaccttttggtgcca	7	14	0	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	64915059	64915059	C	T	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	missense	c.781	p.P261S	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	283	0	0	207	52	20.08	-	-	-	T	64915059	C	T	64915059	3	4	280	1	0	0	0	0	1	0	0	0	18131	739	26	4	787	4	ZNF609	15	64915059	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	8944872	64915059	37616333	59	31250										
ACSM2B	0	genome.wustl.edu	37	chr16	20554293	20554293	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gtctcaaccacagcagggtgCttcatcagtgcattctctac	8	13	4	0			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	16	20554293	20554293	C	T	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	silent	c.1452	p.K484	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	141	0	0	167	104	37.82	-	-	-	T	20554293	C	T	20554293	2	4	280	1	0	0	0	0	0	0	0	1	184	796	28	4		4	ACSM2B	16	20554293	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		20554293	69800460	60	31251										
ATXN2L	0	genome.wustl.edu	37	chr16	28843677	28843677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tcagatcctggagtgggctcCatttctccagcttctccaaa	8	13	3	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	16	28843677	28843677	C	T	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	silent	c.1473	p.S491	0.977	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	45	0	0	90	22	19.64	-	-	-	T	28843677	C	T	28843677	2	4	280	1	0	0	0	0	0	0	0	1	1216	581	21	4		4	ATXN2L	16	28843677	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	8289384	28843677	61511076	61	31252										
ANKFY1	0	genome.wustl.edu	37	chr17	4085564	4085564	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctggcacagacatgtcagctCctcgggtgcatatggcatca	11	12	2	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	4085564	4085564	C	G	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	missense	c.2159	p.G720A	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	145	1	0.68	316	46	12.71	-	-	-	G	4085564	C	G	4085564	3	3	280	1	0	0	0	0	1	0	0	0	626	855	30	2	1520	2	ANKFY1	17	4085564	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		4085564	77109646	62	31253										
TP53	0	genome.wustl.edu	37	chr17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	gcaagaagcccagacggaaaCcgtagctgccctggtaggtt							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	7579364	7579364	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323	p.G108fs	0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	220	0	0	84	113	55.94	-	-	-	-	7579364	C	-	7579364	7	5	280	1	0	1	0	1	0	0	0	0	16477	507	18	0	979	0	TP53	17	7579364	Frame_Shift_Del	DEL	C	TCGA-AN-A0AJ-01A-11W-A019-09	3493800	7579364	73615846	63	31254										
DNAH9	0	genome.wustl.edu	37	chr17	11687759	11687759	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccccccactgatcgatctggCcctcgccttccaccagaaaa	6	19	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	11687759	11687759	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.7964	p.A2655D	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	493	0	0	342	127	27.08	-	-	-	A	11687759	C	A	11687759	3	1	280	1	0	0	0	0	1	0	0	0	4643	739	26	4	8126	4	DNAH9	17	11687759	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	4108395	11687759	69507451	64	31255										
TTC19	0	genome.wustl.edu	37	chr17	15929879	15929881	+	In_Frame_Del	DEL	CTA	CTA	-													0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tgtgctgatgagtgacctggCtactaccctggatgcacagg							TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CTA	CTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	15929879	15929881	CTA	-	DEL	TTC19	ENST00000261647	human	ensembl	69_37n	1	novel	in_frame_del	c.1220_1222	p.T409in_frame_del	1.000:0.814:0.997	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295	146	0	0	58	74	56.06	-	-	-	-	15929881	CTA	-	15929879	7	5	280	1	0	1	0	1	0	0	0	0	16783	797	28	0	1254	0	TTC19	17	15929879	In_Frame_Del	DEL	CTA	TCGA-AN-A0AJ-01A-11W-A019-09	4242120	15929879	65265331	65	31256										
IKZF3	0	genome.wustl.edu	37	chr17	37922577	37922577	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ctgataactggaaccatctcCgaggtgggagcaggcggtgt	15	9	1	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	37922577	37922577	C	T	SNP	IKZF3	ENST00000346872	human	ensembl	69_37n	-1	known	silent	c.996	p.S332	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405	46	0	0	56	16	21.92	-	-	-	T	37922577	C	T	37922577	2	4	280	1	0	0	0	0	0	0	0	1	7670	639	23	1		1	IKZF3	17	37922577	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	21992698	37922577	43272633	66	31257										
DSEL	0	genome.wustl.edu	37	chr18	65180116	65180116	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	caactagcagagtttgggaaTttaagagaagcaaagcacga	11	6	0	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	18	65180116	65180116	T	G	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	missense	c.1760	p.N587T	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	60	0	0	75	20	21.05	-	-	-	G	65180116	T	G	65180116	3	3	280	1	0	0	0	0	1	0	0	0	4810	1493	52	5	1912	5	DSEL	18	65180116	Missense_Mutation	SNP	T	TCGA-AN-A0AJ-01A-11W-A019-09		65180116	12897132	67	31258										
MUC16	0	genome.wustl.edu	37	chr19	9061493	9061493	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	agatgtttataaatcacagtCcctacattgactacaggtgt	7	8	1	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	19	9061493	9061493	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.25953	p.G8651	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	298	0	0	317	82	20.55	-	-	-	A	9061493	C	A	9061493	2	1	280	1	0	0	0	0	0	0	0	1	10045	842	30	2		2	MUC16	19	9061493	Silent	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		9061493	50067490	68	31259										
CABP5	0	genome.wustl.edu	37	chr19	48542565	48542565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	caaagtcatcaaagtctacaCggccacccactgaggaagat	8	12	3	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	19	48542565	48542565	C	T	SNP	CABP5	ENST00000293255	human	ensembl	69_37n	-1	known	missense	c.248	p.R83H	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CABP5	HGNC	ENSG00000105507	175	0	0	108	145	57.09	-	-	-	T	48542565	C	T	48542565	3	4	280	1	0	0	0	0	1	0	0	0	2559	536	19	1	285	1	CABP5	19	48542565	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	39481072	48542565	10586418	69	31260										
ANGPT4	0	genome.wustl.edu	37	chr20	896809	896809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ttgagccacagacatggtggCaaccacaaggaggaggctgc	14	10	0	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	20	896809	896809	C	A	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.49	p.A17S	0.163	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	223	0	0	228	31	11.97	-	-	-	A	896809	C	A	896809	3	1	280	1	0	0	0	0	1	0	0	0	612	710	25	4	1498	4	ANGPT4	20	896809	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		896809	62128711	70	31261										
PROCR	0	genome.wustl.edu	37	chr20	33764038	33764038	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ggctctagagcccatgtcttCttcgaagtggctgtgaatgg	13	9	3	2			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	20	33764038	33764038	C	A	SNP	PROCR	ENST00000216968	human	ensembl	69_37n	1	known	missense	c.390	p.F130L	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000	38	0	0	97	18	15.65	-	-	-	A	33764038	C	A	33764038	3	1	280	1	0	0	0	0	1	0	0	0	12628	912	32	2	400	2	PROCR	20	33764038	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09	32867229	33764038	29261482	71	31262										
MCM3AP	0	genome.wustl.edu	37	chr21	47703566	47703566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	ccactgcaagctttttgctgCgcctggtaaagatgcgctgc	11	12	0	1			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	21	47703566	47703566	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.1406	p.R469H	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	27	0	0	37	16	30.19	-	-	-	T	47703566	C	T	47703566	3	4	280	1	0	0	0	0	1	0	0	0	9459	768	27	1	4644	1	MCM3AP	21	47703566	Missense_Mutation	SNP	C	TCGA-AN-A0AJ-01A-11W-A019-09		47703566	426329	72	31263										
CYLC1	0	genome.wustl.edu	37	chrX	83128429	83128429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	8	0.539836213713331	1.36324324324324	3.78678678678679	0.659633827375763	0.649916646820672	1	0	tgatcccatatcagagatttGctcagaaaatagtttaaatg	7	6	2	3			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	X	83128429	83128429	G	T	SNP	CYLC1	ENST00000329312	human	ensembl	69_37n	1	known	missense	c.713	p.C238F	0.000	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035	169	0	0	66	119	64.32	-	-	-	T	83128429	G	T	83128429	3	4	280	1	0	0	0	0	1	0	0	0	4172	1319	46	4	727	4	CYLC1	23	83128429	Missense_Mutation	SNP	G	TCGA-AN-A0AJ-01A-11W-A019-09		83128429	72142131	73	31264										
DNAJC11	0	genome.wustl.edu	37	chr1	6697264	6697264	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggtgctgctgtaccttggaGgcctccgtgaggatgagctt	15	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	6697264	6697264	G	T	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	silent	c.1518	p.A506	0.998	pfam_DnaJ-like_C11_C	pfam_DnaJ-like_C11_C,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC11	HGNC	ENSG00000007923	58	0	0	31	7	18.42	-	-	-	T	6697264	G	T	6697264	2	4	281	1	0	0	0	0	0	0	0	1	4665	987	35	4		4	DNAJC11	1	6697264	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09		6697264	242553357	1	31265										
CAMTA1	0	genome.wustl.edu	37	chr1	7700471	7700471	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccccacagaaccccgacatCgtcctggtgcactacctgaa	7	17	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	7700471	7700471	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	silent	c.522	p.I174	0.956	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	32	0	0	22	8	26.67	-	-	-	T	7700471	C	T	7700471	2	4	281	1	0	0	0	0	0	0	0	1	2638	874	31	1		1	CAMTA1	1	7700471	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1003207	7700471	241550150	2	31266										
CAMTA1	0	genome.wustl.edu	37	chr1	7724938	7724938	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaccagttctccgacctgatCaacgacttcatctccgtgga	7	14	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	7724938	7724938	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	silent	c.2331	p.I777	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	64	0	0	34	8	19.05	-	-	-	T	7724938	C	T	7724938	2	4	281	1	0	0	0	0	0	0	0	1	2638	816	29	2		2	CAMTA1	1	7724938	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	24467	7724938	241525683	3	31267										
VAMP3	0	genome.wustl.edu	37	chr1	7838211	7838212	+	In_Frame_Ins	INS	-	-	TCA													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gattactgttctggttatctINStcatcatcatcatcatcggt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	7838211	7838212	-	TCA	INS	VAMP3	ENST00000054666	human	ensembl	69_37n	1	known	in_frame_ins	c.265_266	p.93in_frame_insI	0.993:1.000	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP3	HGNC	ENSG00000049245	106	0	0	60	12	16.67	-	-	-	TCA	7838212	-	TCA	7838211	7	5	281	1	0	1	1	0	0	0	0	0	17211	1609	56	0	279	0	VAMP3	1	7838211	In_Frame_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	113273	7838211	241412410	4	31268										
FBXO2	0	genome.wustl.edu	37	chr1	11709979	11709979	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaacgctccccccttcccacCtcctccacccccttctcctt	2	25	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	11709979	11709979	C	A	SNP	FBXO2	ENST00000466919	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXO2	HGNC	ENSG00000116661	44	0	0	8	7	46.67	-	-	-	A	11709979	C	A	11709979	1	1	281	0	1	0	0	0	0	0	0	0	5778	696	24	4		4	FBXO2	1	11709979	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3871768	11709979	237540642	5	31269										
PRAMEF2	0	genome.wustl.edu	37	chr1	12918987	12918987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctatctcccactcttcagGgaggccttcagcaggagaca	9	14	5	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	12918987	12918987	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	silent	c.123	p.R41	0.118	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	352	0	0	258	54	17.31	-	-	-	A	12918987	G	A	12918987	2	1	281	1	0	0	0	0	0	0	0	1	12513	1223	43	4		4	PRAMEF2	1	12918987	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1209008	12918987	236331634	6	31270										
SPEN	0	genome.wustl.edu	37	chr1	16258664	16258664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacctgcagaaacactcaagCcacctgagggatggcggtcg	12	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	16258664	16258664	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.5929	p.P1977S	0.007	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	113	0	0	69	22	23.91	-	-	-	T	16258664	C	T	16258664	3	4	281	1	0	0	0	0	1	0	0	0	15129	739	26	4	5971	4	SPEN	1	16258664	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3339677	16258664	232991957	7	31271										
SPEN	0	genome.wustl.edu	37	chr1	16260194	16260194	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctcacctcctgtcgcctctGgggggatcccacaccagagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	16260194	16260194	G	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.7459	p.I2489fs	0.464	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	342	0	0	195	58	22.48	-	-	-	-	16260194	G	-	16260194	7	5	281	1	0	1	0	1	0	0	0	0	15129	1348	47	0	7501	0	SPEN	1	16260194	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1530	16260194	232990427	8	31272										
SPEN	0	genome.wustl.edu	37	chr1	16260214	16260214	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggggatcccacaccagagCccccctactaaggtgacaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	16260214	16260214	C	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.7479	p.P2495fs	0.001	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	372	0	0	159	131	44.26	-	-	-	-	16260214	C	-	16260214	7	5	281	1	0	1	0	1	0	0	0	0	15129	738	26	0	7521	0	SPEN	1	16260214	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	20	16260214	232990407	9	31273										
NECAP2	0	genome.wustl.edu	37	chr1	16774558	16774558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catgtgttgttccccagggcGacgggcgtttattggaattg	14	8	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	16774558	16774558	G	A	SNP	NECAP2	ENST00000443980	human	ensembl	69_37n	1	known	missense	c.302	p.R101Q	1.000	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191	117	0	0	67	23	25.56	-	-	-	A	16774558	G	A	16774558	3	1	281	1	0	0	0	0	1	0	0	0	10380	1058	37	1	316	1	NECAP2	1	16774558	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	514344	16774558	232476063	10	31274										
ACTL8	0	genome.wustl.edu	37	chr1	18149744	18149744	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgggagggtgtgcagtacCtctggtcatttgtgttggag	16	6	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	18149744	18149744	C	A	SNP	ACTL8	ENST00000375406	human	ensembl	69_37n	1	known	missense	c.241	p.L81I	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL8	HGNC	ENSG00000117148	63	0	0	62	12	16.22	-	-	-	A	18149744	C	A	18149744	3	1	281	1	0	0	0	0	1	0	0	0	202	681	24	4	243	4	ACTL8	1	18149744	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1375186	18149744	231100877	11	31275										
PINK1	0	genome.wustl.edu	37	chr1	20970985	20970985	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctcacttggctgactagaaAatccaagagaggtcccaagc	9	11	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	20970985	20970985	A	G	SNP	PINK1	ENST00000321556	human	ensembl	69_37n	1	known	missense	c.779	p.K260R	0.612	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PINK1	HGNC	ENSG00000158828	127	0	0	49	21	30	-	-	-	G	20970985	A	G	20970985	3	3	281	1	0	0	0	0	1	0	0	0	12006	14	1	5	793	5	PINK1	1	20970985	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2821241	20970985	228279636	12	31276										
KIF17	0	genome.wustl.edu	37	chr1	21014090	21014090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgcccgaggcactcatccaGgaagtatctgctcctggact	10	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	21014090	21014090	G	A	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	silent	c.1729	p.L577	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	87	0	0	51	15	22.73	-	-	-	A	21014090	G	A	21014090	2	1	281	1	0	0	0	0	0	0	0	1	8331	991	35	4		4	KIF17	1	21014090	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	43105	21014090	228236531	13	31277										
RAP1GAP	0	genome.wustl.edu	37	chr1	21926032	21926032	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccctccgtctcctccaccacGctggcgaagctgctggcact	9	19	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	21926032	21926032	G	A	SNP	RAP1GAP	ENST00000290101	human	ensembl	69_37n	-1	known	silent	c.1923	p.S641	1.000	NULL	pfam_Rap_GAP,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP	-	no_errors	RAP1GAP	HGNC	ENSG00000076864	40	0	0	17	5	22.73	-	-	-	A	21926032	G	A	21926032	2	1	281	1	0	0	0	0	0	0	0	1	13120	1078	38	1		1	RAP1GAP	1	21926032	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	911942	21926032	227324589	14	31278										
ZBTB40	0	genome.wustl.edu	37	chr1	22839544	22839544	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcacaccggggaccgcccGttcatgtgcaagcactgcct	10	16	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	22839544	22839544	G	A	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	silent	c.2589	p.P863	0.066	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	96	0	0	50	13	20.63	-	-	-	A	22839544	G	A	22839544	2	1	281	1	0	0	0	0	0	0	0	1	17638	1132	40	1		1	ZBTB40	1	22839544	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	913512	22839544	226411077	15	31279										
HNRNPR	0	genome.wustl.edu	37	chr1	23648138	23648138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccaaggtgtttaccagggcGaatttcatagctgtcacact	9	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	23648138	23648138	G	A	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.694	p.R232C	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	238	0	0	169	44	20.56	-	-	-	A	23648138	G	A	23648138	3	1	281	1	0	0	0	0	1	0	0	0	7323	1058	37	1	1236	1	HNRNPR	1	23648138	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	808594	23648138	225602483	16	31280										
MYOM3	0	genome.wustl.edu	37	chr1	24424424	24424424	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggacttactgcggacgaggActttggcgaaggaggaggcc	17	8	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	24424424	24424424	A	G	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.737	p.V246A	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	85	0	0	63	16	20.25	-	-	-	G	24424424	A	G	24424424	3	3	281	1	0	0	0	0	1	0	0	0	10165	275	10	5	3703	5	MYOM3	1	24424424	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	776286	24424424	224826197	17	31281										
GRHL3	0	genome.wustl.edu	37	chr1	24664534	24664534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtcccagtagagcagctgcGcttctggaagcactggcatt	13	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	24664534	24664534	G	A	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	1	known	missense	c.893	p.R298H	0.998	pfam_CP2	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	41	0	0	40	10	20	-	-	-	A	24664534	G	A	24664534	3	1	281	1	0	0	0	0	1	0	0	0	6816	1087	38	1	955	1	GRHL3	1	24664534	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	240110	24664534	224586087	18	31282										
RPS6KA1	0	genome.wustl.edu	37	chr1	26900923	26900923	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagcgattcactgtataaacTtttttttatgaaaaaaatgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	26900923	26900923	T	-	DEL	RPS6KA1	ENST00000438977	human	ensembl	69_37n	1	putative	frame_shift_del	c.337	p.L115fs	0.672	NULL	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon	RPS6KA1	HGNC	ENSG00000117676	26	0	0	15	6	28.57	-	-	-	-	26900923	T	-	26900923	7	5	281	1	0	1	0	1	0	0	0	0	13736	1624	56	0		0	RPS6KA1	1	26900923	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2236389	26900923	222349698	19	31283										
ARID1A	0	genome.wustl.edu	37	chr1	27106008	27106008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttcccggcctcacgcaccCtgcccaccagcccctcggaa	7	23	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	27106008	27106008	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	silent	c.5619	p.P1873	0.880	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	202	0	0	119	37	23.72	-	-	-	T	27106008	C	T	27106008	2	4	281	1	0	0	0	0	0	0	0	1	915	668	24	4		4	ARID1A	1	27106008	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	205085	27106008	222144613	20	31284										
GPATCH3	0	genome.wustl.edu	37	chr1	27217538	27217538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctgtctgaagcacaactgGaacccctcacaaaggccatg	10	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	27217538	27217538	G	T	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.1541	p.S514Y	0.943	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	45	0	0	17	12	41.38	-	-	-	T	27217538	G	T	27217538	3	4	281	1	0	0	0	0	1	0	0	0	6642	1174	41	2	40	2	GPATCH3	1	27217538	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	111530	27217538	222033083	21	31285										
WDTC1	0	genome.wustl.edu	37	chr1	27631480	27631480	+	RNA	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctgacctccctgccctttgCccccccgccagcaacgctca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	27631480	27631480	C	-	DEL	WDTC1	ENST00000491239	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.309	-	-	-	no_errors	WDTC1	HGNC	ENSG00000142784	62	0	0	55	8	12.5	-	-	-	-	27631480	C	-	27631480	6	5	281	0	1	1	0	1	0	0	0	0	17439	754	26	0		0	WDTC1	1	27631480	RNA	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	413942	27631480	221619141	22	31286										
SNRNP40	0	genome.wustl.edu	37	chr1	31732678	31732678	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaacaggaaaaaagaaaaagAaaaaaaaaaacagtccctga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	31732678	31732678	A	-	DEL	SNRNP40	ENST00000486941	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	SNRNP40	HGNC	ENSG00000060688	12	0	0	12	5	29.41	-	-	-	-	31732678	A	-	31732678	6	5	281	0	1	1	0	1	0	0	0	0	14945	261	9	0		0	SNRNP40	1	31732678	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	4101198	31732678	217517943	23	31287										
HDAC1	0	genome.wustl.edu	37	chr1	32797615	32797615	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtctcttggaggacacgcagGgaagcactgggcatagatgc	15	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	32797615	32797615	G	T	SNP	HDAC1	ENST00000471488	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	HDAC1	HGNC	ENSG00000116478	63	0	0	6	12	66.67	-	-	-	T	32797615	G	T	32797615	1	4	281	0	1	0	0	0	0	0	0	0	7055	1247	43	4		4	HDAC1	1	32797615	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1064937	32797615	216453006	24	31288										
YARS	0	genome.wustl.edu	37	chr1	33245441	33245441	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctccactccttactagtagTaagacttgggtatgtactgg	10	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	33245441	33245441	T	C	SNP	YARS	ENST00000490826	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	YARS	HGNC	ENSG00000134684	35	0	0	25	6	19.35	-	-	-	C	33245441	T	C	33245441	1	2	281	0	1	0	0	0	0	0	0	0	17564	1653	57	5		5	YARS	1	33245441	RNA	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	447826	33245441	216005180	25	31289										
TMEM54	0	genome.wustl.edu	37	chr1	33363729	33363729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcccagcctggccataccaCgatggcggaagtgacagaga	12	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	33363729	33363729	C	T	SNP	TMEM54	ENST00000373463	human	ensembl	69_37n	-1	known	missense	c.208	p.V70M	1.000	pfam_Beta-casein-like	pfam_Beta-casein-like	-	no_errors	TMEM54	HGNC	ENSG00000121900	67	0	0	13	10	43.48	-	-	-	T	33363729	C	T	33363729	3	4	281	1	0	0	0	0	1	0	0	0	16275	536	19	1	480	1	TMEM54	1	33363729	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	118288	33363729	215886892	26	31290										
GJA4	0	genome.wustl.edu	37	chr1	35260297	35260297	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatgtcgccagtgtgctctgCaagagtgtgctagaggcagg	15	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	35260297	35260297	C	T	SNP	GJA4	ENST00000342280	human	ensembl	69_37n	1	known	silent	c.483	p.C161	1.000	prints_Connexin,prints_Connexin37	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513	53	0	0	26	8	23.53	-	-	-	T	35260297	C	T	35260297	2	4	281	1	0	0	0	0	0	0	0	1	6455	718	25	4		4	GJA4	1	35260297	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1896568	35260297	213990324	27	31291										
ZMYM6	0	genome.wustl.edu	37	chr1	35476534	35476534	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggcagaggtgttacctcctCctattgacactgctgacctg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	35476534	35476534	C	-	DEL	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	frame_shift_del	c.1166	p.G389fs	0.009	NULL	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	82	0	0	47	17	26.56	-	-	-	-	35476534	C	-	35476534	7	5	281	1	0	1	0	1	0	0	0	0	17800	855	30	0	2843	0	ZMYM6	1	35476534	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	216237	35476534	213774087	28	31292										
EIF2C3	0	genome.wustl.edu	37	chr1	36479150	36479150	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atattatggacacagtgaagAaaaaaaagagggttctaatg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	36479150	36479150	A	-	DEL	EIF2C3	ENST00000479395	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EIF2C3	HGNC	ENSG00000126070	95	0	0	55	11	16.42	-	-	-	-	36479150	A	-	36479150	6	5	281	0	1	1	0	1	0	0	0	0	5042	261	9	0		0	EIF2C3	1	36479150	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1002616	36479150	212771471	29	31293										
ZC3H12A	0	genome.wustl.edu	37	chr1	37949123	37949123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcccccgcacctggtggagGctgtgatggggcgcttccca	14	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	37949123	37949123	G	A	SNP	ZC3H12A	ENST00000373082	human	ensembl	69_37n	1	known	missense	c.1711	p.A571T	0.949	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	26	0	0	10	5	33.33	-	-	-	A	37949123	G	A	37949123	3	1	281	1	0	0	0	0	1	0	0	0	17657	1203	42	4	1729	4	ZC3H12A	1	37949123	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1469973	37949123	211301498	30	31294										
CAP1	0	genome.wustl.edu	37	chr1	40536594	40536597	+	Frame_Shift_Del	DEL	AGTC	AGTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aattccctggattgtgaaatAgtcagtgccaaatcttccga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGTC	AGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	40536594	40536597	AGTC	-	DEL	CAP1	ENST00000372792	human	ensembl	69_37n	1	known	frame_shift_del	c.1287_1290	p.S431fs	1.000:1.000:1.000:1.000	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236	420	0	0	329	55	14.32	-	-	-	-	40536597	AGTC	-	40536594	7	5	281	1	0	1	0	1	0	0	0	0	2644	410	15	0	1329	0	CAP1	1	40536594	Frame_Shift_Del	DEL	AGTC	TCGA-AN-A0AK-01A-21W-A019-09	2587471	40536594	208714027	31	31295										
ZMPSTE24	0	genome.wustl.edu	37	chr1	40726653	40726653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actctattcagagactgaagGcactgtgagtaatttacttc	8	8	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	40726653	40726653	G	A	SNP	ZMPSTE24	ENST00000372759	human	ensembl	69_37n	1	known	missense	c.266	p.G89D	1.000	NULL	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073	166	0	0	115	34	22.67	-	-	-	A	40726653	G	A	40726653	3	1	281	1	0	0	0	0	1	0	0	0	17794	1203	42	4	272	4	ZMPSTE24	1	40726653	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	190059	40726653	208523968	32	31296										
SMAP2	0	genome.wustl.edu	37	chr1	40879826	40879826	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgctataacatattttcacCttagccacagaaaaaagaag	5	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	40879826	40879826	C	A	SNP	SMAP2	ENST00000487871	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	SMAP2	HGNC	ENSG00000084070	138	0	0	97	38	28.15	-	-	-	A	40879826	C	A	40879826	1	1	281	0	1	0	0	0	0	0	0	0	14856	696	24	4		4	SMAP2	1	40879826	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	153173	40879826	208370795	33	31297										
PTPRF	0	genome.wustl.edu	37	chr1	44069291	44069291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggtccttcagtcccaggccGgcccaccatgatgatcagca	10	15	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	44069291	44069291	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.2468	p.R823Q	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	53	0	0	20	10	33.33	-	-	-	A	44069291	G	A	44069291	3	1	281	1	0	0	0	0	1	0	0	0	12884	1116	39	1	2522	1	PTPRF	1	44069291	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3189465	44069291	205181330	34	31298										
DPH2	0	genome.wustl.edu	37	chr1	44436768	44436768	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcgtcaacgttctgtggccTtggagctctgtgtcaaggcc	12	11	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	44436768	44436768	T	C	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	1	known	silent	c.391	p.L131	0.990	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	17	0	0	3	7	70	-	-	-	C	44436768	T	C	44436768	2	2	281	1	0	0	0	0	0	0	0	1	4755	1606	56	5		5	DPH2	1	44436768	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	367477	44436768	204813853	35	31299										
MAST2	0	genome.wustl.edu	37	chr1	46485319	46485319	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttttgtgatgcagctggtgAaaaagctgatgattatcatt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	46485319	46485319	A	-	DEL	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	frame_shift_del	c.1240	p.K415fs	1.000	pfam_MA_Ser/Thr_Kinase_dom,superfamily_MAST_pre-PK_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	53	0	0	44	10	18.52	-	-	-	-	46485319	A	-	46485319	7	5	281	1	0	1	0	1	0	0	0	0	9396	247	9	0	1282	0	MAST2	1	46485319	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2048551	46485319	202765302	36	31300										
POMGNT1	0	genome.wustl.edu	37	chr1	46654518	46654518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtccatgggttgggcacaGcagtttcctgagtaagagcc	13	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	46654518	46654518	G	A	SNP	POMGNT1	ENST00000371986	human	ensembl	69_37n	-1	known	missense	c.2120	p.A707V	1.000	NULL	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998	135	0	0	32	34	51.52	-	-	-	A	46654518	G	A	46654518	3	1	281	1	0	0	0	0	1	0	0	0	12317	986	34	4		4	POMGNT1	1	46654518	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	169199	46654518	202596103	37	31301										
LRRC41	0	genome.wustl.edu	37	chr1	46751495	46751495	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagcctcatgggaggtggctGgggggtgcagctccctctta							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	46751495	46751495	G	-	DEL	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	frame_shift_del	c.1034	p.P345fs	0.616	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	148	0	0	118	40	25.32	-	-	-	-	46751495	G	-	46751495	7	5	281	1	0	1	0	1	0	0	0	0	9065	1348	47	0	1432	0	LRRC41	1	46751495	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	96977	46751495	202499126	38	31302										
CYP4B1	0	genome.wustl.edu	37	chr1	47280919	47280919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtccgcgagatcctaggggaCcaggacttcttccagtggtg	14	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	47280919	47280919	C	T	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	silent	c.1056	p.D352	0.191	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	58	0	0	26	7	21.21	-	-	-	T	47280919	C	T	47280919	2	4	281	1	0	0	0	0	0	0	0	1	4216	506	18	4		4	CYP4B1	1	47280919	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	529424	47280919	201969702	39	31303										
SLC5A9	0	genome.wustl.edu	37	chr1	48699340	48699340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccacagacgaggtgggctgCgtggaccctgatgtctgcca	14	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	48699340	48699340	C	T	SNP	SLC5A9	ENST00000425816	human	ensembl	69_37n	1	known	missense	c.841	p.R281C	0.947	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	69	0	0	43	9	17.31	-	-	-	T	48699340	C	T	48699340	3	4	281	1	0	0	0	0	1	0	0	0	14761	776	27	1	1160	1	SLC5A9	1	48699340	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1418421	48699340	200551281	40	31304										
CC2D1B	0	genome.wustl.edu	37	chr1	52826578	52826578	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccttgctgtgcaggccagGccacacacgtgttacgtctg	12	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	52826578	52826578	G	A	SNP	CC2D1B	ENST00000491136	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CC2D1B	HGNC	ENSG00000154222	58	0	0	32	8	20	-	-	-	A	52826578	G	A	52826578	1	1	281	0	1	0	0	0	0	0	0	0	2752	1218	42	4		4	CC2D1B	1	52826578	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4127238	52826578	196424043	41	31305										
MAGOH	0	genome.wustl.edu	37	chr1	53699579	53699579	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcacatggcccttctgcctGcccacatacccaactcacaa	4	18	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	53699579	53699579	G	A	SNP	MAGOH	ENST00000495868	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	MAGOH	HGNC	ENSG00000162385	32	0	0	21	4	16	-	-	-	A	53699579	G	A	53699579	1	1	281	0	1	0	0	0	0	0	0	0	9265	1334	46	4		4	MAGOH	1	53699579	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	873001	53699579	195551042	42	31306										
ACOT11	0	genome.wustl.edu	37	chr1	55060296	55060296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcacagtgtggcggctgagcGccggcgcatgcgccttgtct	16	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	55060296	55060296	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	69_37n	1	known	missense	c.539	p.R180H	1.000	NULL	pfam_START_lipid-bd,pfam_Thioestr_supf,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT11	HGNC	ENSG00000162390	29	0	0	16	8	33.33	-	-	-	A	55060296	G	A	55060296	3	1	281	1	0	0	0	0	1	0	0	0	149	1087	38	1	561	1	ACOT11	1	55060296	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1360717	55060296	194190325	43	31307										
C1orf168	0	genome.wustl.edu	37	chr1	57185280	57185280	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaactgaaactgatgtaacGcaggactaggatcttaggac	10	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	57185280	57185280	G	A	SNP	C1orf168	ENST00000493000	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf168	HGNC	ENSG00000187889	54	0	0	38	10	20.83	-	-	-	A	57185280	G	A	57185280	1	1	281	0	1	0	0	0	0	0	0	0	2031	1102	38	1		1	C1orf168	1	57185280	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2124984	57185280	192065341	44	31308										
C8B	0	genome.wustl.edu	37	chr1	57415383	57415383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attgcgttcaaaatctgagtAtgattcatactcttttaata	5	6	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	57415383	57415383	A	G	SNP	C8B	ENST00000371237	human	ensembl	69_37n	-1	known	missense	c.709	p.Y237H	0.992	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852	153	0	0	125	18	12.5	-	-	-	G	57415383	A	G	57415383	3	3	281	1	0	0	0	0	1	0	0	0	2440	449	16	5	1094	5	C8B	1	57415383	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	230103	57415383	191835238	45	31309										
ROR1	0	genome.wustl.edu	37	chr1	64643693	64643693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtaagtccttgctgcccattCgctggatgccccctgaagcc	10	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	64643693	64643693	C	T	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.1969	p.R657C	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	148	0	0	135	17	11.18	-	-	-	T	64643693	C	T	64643693	3	4	281	1	0	0	0	0	1	0	0	0	13612	884	31	1	2011	1	ROR1	1	64643693	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7228310	64643693	184606928	46	31310										
JAK1	0	genome.wustl.edu	37	chr1	65310574	65310574	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaccaggtctttatcctccTgcagagtaaaaaggtcaagt	10	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	65310574	65310574	T	G	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	splice_site	c.2116-2	e15-2	0.995	-	-	-	no_errors	JAK1	HGNC	ENSG00000162434	51	0	0	29	12	29.27	-	-	-	G	65310574	T	G	65310574	5	3	281	1	0	0	0	0	0	0	1	0	7991	1594	55	5	1390	5	JAK1	1	65310574	Splice_Site	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	666881	65310574	183940047	47	31311										
IL12RB2	0	genome.wustl.edu	37	chr1	67793894	67793895	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtttacaggctaagtggaccINSaaaaaatttaacctggcaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	67793894	67793895	-	A	INS	IL12RB2	ENST00000262345	human	ensembl	69_37n	1	known	frame_shift_ins	c.491_492	p.N166fs	0.974:0.061	pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	240	0	0	232	49	17.44	-	-	-	A	67793895	-	A	67793894	7	5	281	1	0	1	1	0	0	0	0	0	7681	594	21	0	505	0	IL12RB2	1	67793894	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2483320	67793894	181456727	48	31312										
ASB17	0	genome.wustl.edu	37	chr1	76397785	76397785	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtaatctgtgagtagtgcGtcaaaaccatccaagtccac	8	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	76397785	76397785	G	A	SNP	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	silent	c.192	p.D64	0.632	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	247	0	0	157	54	25.59	-	-	-	A	76397785	G	A	76397785	2	1	281	1	0	0	0	0	0	0	0	1	1025	1136	40	1		1	ASB17	1	76397785	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8603891	76397785	172852836	49	31313										
ST6GALNAC5	0	genome.wustl.edu	37	chr1	77510159	77510159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggccccagcagctacatgCggcgggacggcaagggccag	18	13	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	77510159	77510159	C	T	SNP	ST6GALNAC5	ENST00000477717	human	ensembl	69_37n	1	known	missense	c.532	p.R178W	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069	127	0	0	68	16	19.05	-	-	-	T	77510159	C	T	77510159	3	4	281	1	0	0	0	0	1	0	0	0	15318	759	27	1	542	1	ST6GALNAC5	1	77510159	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1112374	77510159	171740462	50	31314										
FAM73A	0	genome.wustl.edu	37	chr1	78325075	78325075	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcgacaggcttttcaggtaTttttttaacattaagtgact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	78325075	78325075	T	-	DEL	FAM73A	ENST00000476203	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	FAM73A	HGNC	ENSG00000180488	119	0	0	85	17	16.67	-	-	-	-	78325075	T	-	78325075	6	5	281	0	1	1	0	1	0	0	0	0	5662	1508	52	0		0	FAM73A	1	78325075	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	814916	78325075	170925546	51	31315										
NEXN	0	genome.wustl.edu	37	chr1	78398877	78398877	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacaaaaactaaaaacaaacAaaaaaaagaaatcccagttt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	78398877	78398877	A	-	DEL	NEXN	ENST00000480732	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	NEXN	HGNC	ENSG00000162614	21	0	0	13	10	40	-	-	-	-	78398877	A	-	78398877	6	5	281	0	1	1	0	1	0	0	0	0	10427	145	5	0		0	NEXN	1	78398877	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	73802	78398877	170851744	52	31316										
MCOLN2	0	genome.wustl.edu	37	chr1	85397106	85397106	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gactgagaatcatatatataAaaaggctgatgaaggaatat	9	3	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	85397106	85397106	A	T	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1481	p.F494Y	0.999	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	175	0	0	97	29	23.02	-	-	-	T	85397106	A	T	85397106	3	4	281	1	0	0	0	0	1	0	0	0	9467	14	1	5	231	5	MCOLN2	1	85397106	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6998229	85397106	163853515	53	31317										
MCOLN3	0	genome.wustl.edu	37	chr1	85491636	85491636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aattaccttagcttggatttCcatttttagaattgatccaa	5	7	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	85491636	85491636	C	T	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.1081	p.E361K	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	108	0	0	47	43	47.78	-	-	-	T	85491636	C	T	85491636	3	4	281	1	0	0	0	0	1	0	0	0	9468	864	30	2	600	2	MCOLN3	1	85491636	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	94530	85491636	163758985	54	31318										
CLCA1	0	genome.wustl.edu	37	chr1	86948050	86948052	+	In_Frame_Del	DEL	ACA	ACA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaggcttctataatgtttgcAcaacatgttgattctgtaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	86948050	86948052	ACA	-	DEL	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	in_frame_del	c.720_722	p.Q241in_frame_del	0.413:0.771:0.753	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	123	0	0	74	30	28.85	-	-	-	-	86948052	ACA	-	86948050	7	5	281	1	0	1	0	1	0	0	0	0	3487	146	6	0	738	0	CLCA1	1	86948050	In_Frame_Del	DEL	ACA	TCGA-AN-A0AK-01A-21W-A019-09	1456414	86948050	162302571	55	31319										
GBP7	0	genome.wustl.edu	37	chr1	89613267	89613267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caccttaactccttttctggGcactagtgtatagtcctgtt	7	11	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	89613267	89613267	G	A	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.1348	p.P450S	0.108	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	312	0	0	209	68	24.37	-	-	-	A	89613267	G	A	89613267	3	1	281	1	0	0	0	0	1	0	0	0	6329	1203	42	4	584	4	GBP7	1	89613267	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2665217	89613267	159637354	56	31320										
TGFBR3	0	genome.wustl.edu	37	chr1	92185763	92185763	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctcaggaggaatagtgtggActtcctcatctcccatctcc	9	13	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	92185763	92185763	A	G	SNP	TGFBR3	ENST00000212355	human	ensembl	69_37n	-1	known	missense	c.1100	p.V367A	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TGFBR3	HGNC	ENSG00000069702	71	0	0	54	13	19.4	-	-	-	G	92185763	A	G	92185763	3	3	281	1	0	0	0	0	1	0	0	0	15918	275	10	5	1491	5	TGFBR3	1	92185763	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2572496	92185763	157064858	57	31321										
EVI5	0	genome.wustl.edu	37	chr1	93073081	93073081	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaatcacgataaaacaaacAaaaaaaaggcattattatat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	93073081	93073081	A	-	DEL	EVI5	ENST00000492513	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVI5	HGNC	ENSG00000067208	30	0	0	20	8	27.59	-	-	-	-	93073081	A	-	93073081	6	5	281	0	1	1	0	1	0	0	0	0	5326	145	5	0		0	EVI5	1	93073081	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	887318	93073081	156177540	58	31322										
DNTTIP2	0	genome.wustl.edu	37	chr1	94335493	94335493	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatctctgagtacttccttcGgttgtatctgaaaaagaaaa	8	7	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	94335493	94335493	G	T	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	silent	c.2185	p.R729	1.000	pfam_Fcf2	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	77	0	0	47	16	25.4	-	-	-	T	94335493	G	T	94335493	2	4	281	1	0	0	0	0	0	0	0	1	4717	1124	39	3		3	DNTTIP2	1	94335493	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1262412	94335493	154915128	59	31323										
CSF1	0	genome.wustl.edu	37	chr1	110466430	110466431	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccatctgccctgctcagagaINSccccccggagccaggctctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	110466430	110466431	-	C	INS	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	frame_shift_ins	c.1187_1188	p.E399fs	0.004:0.001	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	171	0	0	79	31	28.18	-	-	-	C	110466431	-	C	110466430	7	5	281	1	0	1	1	0	0	0	0	0	3963	275	10	0	1209	0	CSF1	1	110466430	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	16130937	110466430	138784191	60	31324										
AHCYL1	0	genome.wustl.edu	37	chr1	110561664	110561664	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catcccagggctctctcttaCctttccagggtcgtctactc	7	16	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	110561664	110561664	C	T	SNP	AHCYL1	ENST00000469401	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AHCYL1	HGNC	ENSG00000168710	135	0	0	64	22	25.58	-	-	-	T	110561664	C	T	110561664	1	4	281	0	1	0	0	0	0	0	0	0	410	522	18	4		4	AHCYL1	1	110561664	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	95234	110561664	138688957	61	31325										
FAM40A	0	genome.wustl.edu	37	chr1	110584393	110584393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatgagccatttgccatcatGctgtttgggatggtgaccaa	11	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	110584393	110584393	G	A	SNP	FAM40A	ENST00000369795	human	ensembl	69_37n	1	known	missense	c.795	p.M265I	1.000	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	95	0	0	34	22	38.6	-	-	-	A	110584393	G	A	110584393	3	1	281	1	0	0	0	0	1	0	0	0	5606	1319	46	4	825	4	FAM40A	1	110584393	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	22729	110584393	138666228	62	31326										
KCNA2	0	genome.wustl.edu	37	chr1	111146137	111146137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtattgggcctgttcctctCcctctgtctcccggtggtag	11	13	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	111146137	111146137	C	T	SNP	KCNA2	ENST00000316361	human	ensembl	69_37n	-1	known	missense	c.1268	p.G423E	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301	217	0	0	87	27	23.68	-	-	-	T	111146137	C	T	111146137	3	4	281	1	0	0	0	0	1	0	0	0	8057	855	30	2	235	2	KCNA2	1	111146137	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	561744	111146137	138104484	63	31327										
MOV10	0	genome.wustl.edu	37	chr1	113232169	113232169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accctgaggcttcggaatggCggaacccagtctgttaccct	11	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	113232169	113232169	C	T	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	silent	c.474	p.G158	0.997	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	131	0	0	32	31	49.21	-	-	-	T	113232169	C	T	113232169	2	4	281	1	0	0	0	0	0	0	0	1	9790	755	27	1		1	MOV10	1	113232169	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2086032	113232169	136018452	64	31328										
SLC16A1	0	genome.wustl.edu	37	chr1	113471890	113471890	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccagccccagcctccatctGggggggtgtatccaactgga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	113471890	113471890	G	-	DEL	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	frame_shift_del	c.41	p.P14fs	1.000	tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	69	0	0	64	11	14.47	-	-	-	-	113471890	G	-	113471890	7	5	281	1	0	1	0	1	0	0	0	0	14491	1348	47	0	1477	0	SLC16A1	1	113471890	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	239721	113471890	135778731	65	31329										
MAGI3	0	genome.wustl.edu	37	chr1	114225754	114225755	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcatcagtctcttctccagINSaaaaatgtgagtaagaggga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	114225754	114225755	-	A	INS	MAGI3	ENST00000307546	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3564_3565	p.N1189fs	0.989:0.998	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	110	0	0	95	19	16.67	-	-	-	A	114225755	-	A	114225754	7	5	281	1	0	1	1	0	0	0	0	0	9263	933	33	0	3700	0	MAGI3	1	114225754	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	753864	114225754	135024867	66	31330										
AP4B1	0	genome.wustl.edu	37	chr1	114440240	114440240	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaacaaaacagaactgttcAagagaacaatggtatcacag	7	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	114440240	114440240	A	G	SNP	AP4B1	ENST00000462591	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	AP4B1	HGNC	ENSG00000134262	21	0	0	4	7	63.64	-	-	-	G	114440240	A	G	114440240	1	3	281	0	1	0	0	0	0	0	0	0	752	145	5	5		5	AP4B1	1	114440240	RNA	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	214486	114440240	134810381	67	31331										
OLFML3	0	genome.wustl.edu	37	chr1	114523959	114523959	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcccagcagaggggctgatCcccccctacggcttgacagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	114523959	114523959	C	-	DEL	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	frame_shift_del	c.789	p.Y266fs	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	165	0	0	103	55	33.95	-	-	-	-	114523959	C	-	114523959	7	5	281	1	0	1	0	1	0	0	0	0	10932	845	30	0	799	0	OLFML3	1	114523959	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	83719	114523959	134726662	68	31332										
SYT6	0	genome.wustl.edu	37	chr1	114682359	114682359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgtggctgatcttcacggcCgcctccaggaagcccagggt	14	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	114682359	114682359	C	T	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	silent	c.390	p.A130	0.895	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	51	0	0	25	14	35.9	-	-	-	T	114682359	C	T	114682359	2	4	281	1	0	0	0	0	0	0	0	1	15570	639	23	1		1	SYT6	1	114682359	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	158400	114682359	134568262	69	31333										
NGF	0	genome.wustl.edu	37	chr1	115829303	115829303	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaagggaatgctgaagtttAgtccagtgggcttgggggat	16	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	115829303	115829303	A	G	SNP	NGF	ENST00000369512	human	ensembl	69_37n	-1	known	silent	c.114	p.T38	0.951	pirsf_Nerve_growth_factor-like,prints_Nerve_growth_factor_bsu_mml	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259	68	0	0	51	19	27.14	-	-	-	G	115829303	A	G	115829303	2	3	281	1	0	0	0	0	0	0	0	1	10467	407	15	5		5	NGF	1	115829303	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1146944	115829303	133421318	70	31334										
CASQ2	0	genome.wustl.edu	37	chr1	116243962	116243962	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcagtgtttatctttccaGaaagcacatcctcaatccag	5	12	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	116243962	116243962	G	C	SNP	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	missense	c.1100	p.S367C	1.000	pfam_Calsequestrin,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	97	0	0	66	16	19.28	-	-	-	C	116243962	G	C	116243962	3	2	281	1	0	0	0	0	1	0	0	0	2706	942	33	2	103	2	CASQ2	1	116243962	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	414659	116243962	133006659	71	31335										
NOTCH2	0	genome.wustl.edu	37	chr1	120483317	120483317	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaaggatccagtgaaacccAcagggcacaagcaagagaag	12	9	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	120483317	120483317	A	G	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.3044	p.V1015A	0.649	pirsf_Notch,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	114	0	0	66	8	10.81	-	-	-	G	120483317	A	G	120483317	3	3	281	1	0	0	0	0	1	0	0	0	10620	159	6	5	4435	5	NOTCH2	1	120483317	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4239355	120483317	128767304	72	31336										
GJA5	0	genome.wustl.edu	37	chr1	147230617	147230617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagctggcacttagccatgtGctgccgcggtttgacaaatc	11	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	147230617	147230617	G	A	SNP	GJA5	ENST00000271348	human	ensembl	69_37n	-1	known	missense	c.730	p.H244Y	0.003	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140	115	0	0	111	16	12.6	-	-	-	A	147230617	G	A	147230617	3	1	281	1	0	0	0	0	1	0	0	0	6456	1319	46	4	350	4	GJA5	1	147230617	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	26747300	147230617	102020004	73	31337										
FCGR1A	0	genome.wustl.edu	37	chr1	149755712	149755712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cactcagacctcgacccccaGctacagaatcacctctgcca	5	19	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	149755712	149755712	G	A	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	missense	c.206	p.S69N	0.003	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	161	0	0	139	28	16.77	-	-	-	A	149755712	G	A	149755712	3	1	281	1	0	0	0	0	1	0	0	0	5825	971	34	4	216	4	FCGR1A	1	149755712	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2525095	149755712	99494909	74	31338										
MRPS21	0	genome.wustl.edu	37	chr1	150280526	150280526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaggacattaagcatcggcGgtattatgagaagccatgcc	12	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	150280526	150280526	G	A	SNP	MRPS21	ENST00000309092	human	ensembl	69_37n	1	known	missense	c.128	p.R43Q	0.998	pfam_Ribosomal_S21,tigrfam_Ribosomal_S21	pfam_Ribosomal_S21,tigrfam_Ribosomal_S21	-	no_errors	MRPS21	HGNC	ENSG00000187145	61	0	0	59	9	13.24	-	-	-	A	150280526	G	A	150280526	3	1	281	1	0	0	0	0	1	0	0	0	9904	1116	39	1	134	1	MRPS21	1	150280526	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	524814	150280526	98970095	75	31339										
RPRD2	0	genome.wustl.edu	37	chr1	150443266	150443266	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaggcctcaattgggcaaagCccagggctcccaagcactac	10	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	150443266	150443266	C	T	SNP	RPRD2	ENST00000369068	human	ensembl	69_37n	1	known	silent	c.1842	p.S614	0.999	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	198	0	0	272	43	13.65	-	-	-	T	150443266	C	T	150443266	2	4	281	1	0	0	0	0	0	0	0	1	13703	738	26	4		4	RPRD2	1	150443266	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	162740	150443266	98807355	76	31340										
C1orf56	0	genome.wustl.edu	37	chr1	151020687	151020688	+	Frame_Shift_Del	DEL	AG	AG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccggaaaggatagcaccagcAgagagcttcccagtgcgact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	151020687	151020688	AG	-	DEL	C1orf56	ENST00000368926	human	ensembl	69_37n	1	known	frame_shift_del	c.364_365	p.E123fs	0.000:0.000	NULL	superfamily_Thrombospondin_1_rpt	-	no_errors	C1orf56	HGNC	ENSG00000143443	99	0	0	72	11	13.25	-	-	-	-	151020688	AG	-	151020687	7	5	281	1	0	1	0	1	0	0	0	0	2068	180	7	0	366	0	C1orf56	1	151020687	Frame_Shift_Del	DEL	AG	TCGA-AN-A0AK-01A-21W-A019-09	577421	151020687	98229934	77	31341										
ZNF687	0	genome.wustl.edu	37	chr1	151261079	151261079	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcgcatgcataagaatcgaCccccccatgtctgtcctgag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	151261079	151261079	C	-	DEL	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	frame_shift_del	c.2191	p.H733fs	0.430	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	79	0	0	45	14	23.33	-	-	-	-	151261079	C	-	151261079	7	5	281	1	0	1	0	1	0	0	0	0	18188	507	18	0	2197	0	ZNF687	1	151261079	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	240392	151261079	97989542	78	31342										
RFX5	0	genome.wustl.edu	37	chr1	151314915	151314915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaacagtaccatctccctgaCcctgggcaagtactgccccc	7	17	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	151314915	151314915	C	T	SNP	RFX5	ENST00000290524	human	ensembl	69_37n	-1	known	missense	c.1598	p.G533D	0.571	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390	303	0	0	345	56	13.93	-	-	-	T	151314915	C	T	151314915	3	4	281	1	0	0	0	0	1	0	0	0	13349	507	18	4	256	4	RFX5	1	151314915	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	53836	151314915	97935706	79	31343										
LINGO4	0	genome.wustl.edu	37	chr1	151774033	151774033	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgggggccagcacaggcaGggggggacatgccaaagtcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	151774033	151774033	G	-	DEL	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	frame_shift_del	c.1148	p.P383fs	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	91	0	0	69	15	17.65	-	-	-	-	151774033	G	-	151774033	7	5	281	1	0	1	0	1	0	0	0	0	8873	1000	35	0	637	0	LINGO4	1	151774033	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	459118	151774033	97476588	80	31344										
FLG	0	genome.wustl.edu	37	chr1	152276486	152276486	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgctggtggtgggatccatGtctctctcctgcacttgatc	11	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	152276486	152276486	G	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.10876	p.H3626D	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	588	1	0.17	591	116	16.41	-	-	-	C	152276486	G	C	152276486	3	2	281	1	0	0	0	0	1	0	0	0	5968	1377	48	4	1313	4	FLG	1	152276486	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	502453	152276486	96974135	81	31345										
LCE5A	0	genome.wustl.edu	37	chr1	152484252	152484252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgccagtccctccgacgccGacctcagagttccagctgct	9	19	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	152484252	152484252	G	A	SNP	LCE5A	ENST00000334269	human	ensembl	69_37n	1	known	missense	c.242	p.R81Q	0.000	NULL	NULL	-	no_errors	LCE5A	HGNC	ENSG00000186207	53	0	0	31	12	27.91	-	-	-	A	152484252	G	A	152484252	3	1	281	1	0	0	0	0	1	0	0	0	8729	1058	37	1	244	1	LCE5A	1	152484252	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	207766	152484252	96766369	82	31346										
INTS3	0	genome.wustl.edu	37	chr1	153730074	153730074	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttggtcaacaaaagcgataCcaagattggttccagcgcca	9	10	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	153730074	153730074	C	T	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	silent	c.984	p.Y328	0.996	pfam_Integrator_3	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	293	0	0	257	90	25.94	-	-	-	T	153730074	C	T	153730074	2	4	281	1	0	0	0	0	0	0	0	1	7833	518	18	4		4	INTS3	1	153730074	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1245822	153730074	95520547	83	31347										
UBAP2L	0	genome.wustl.edu	37	chr1	154215409	154215409	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagggattttctttcttttaTttttttttttttatgtctag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	154215409	154215409	T	-	DEL	UBAP2L	ENST00000466173	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UBAP2L	HGNC	ENSG00000143569	24	0	0	20	14	36.84	-	-	-	-	154215409	T	-	154215409	6	5	281	0	1	1	0	1	0	0	0	0	16935	1508	52	0		0	UBAP2L	1	154215409	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	485335	154215409	95035212	84	31348										
UBAP2L	0	genome.wustl.edu	37	chr1	154223668	154223668	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctccacctccgtcttctccTctgccaagcaaatccacatc	3	20	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	154223668	154223668	T	C	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	silent	c.1365	p.P455	0.997	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	203	1	0.49	211	51	19.39	-	-	-	C	154223668	T	C	154223668	2	2	281	1	0	0	0	0	0	0	0	1	16935	1538	54	5		5	UBAP2L	1	154223668	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	8259	154223668	95026953	85	31349										
LENEP	0	genome.wustl.edu	37	chr1	154966135	154966135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccctacccttcttcctcggaGgggcccctcgagacactggg	11	17	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	154966135	154966135	G	T	SNP	LENEP	ENST00000368427	human	ensembl	69_37n	1	known	missense	c.52	p.G18W	0.218	NULL	NULL	-	no_errors	LENEP	HGNC	ENSG00000163352	42	0	0	51	8	13.56	-	-	-	T	154966135	G	T	154966135	3	4	281	1	0	0	0	0	1	0	0	0	8776	1000	35	4	54	4	LENEP	1	154966135	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	742467	154966135	94284486	86	31350										
DCST1	0	genome.wustl.edu	37	chr1	155014270	155014270	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcatgaagcacatctgggtcCcactcctcacccacctgctc	7	18	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	155014270	155014270	C	A	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	missense	c.829	p.P277T	0.999	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	80	0	0	69	8	10.39	-	-	-	A	155014270	C	A	155014270	3	1	281	1	0	0	0	0	1	0	0	0	4333	623	22	4	855	4	DCST1	1	155014270	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	48135	155014270	94236351	87	31351										
EFNA3	0	genome.wustl.edu	37	chr1	155059036	155059036	+	RNA	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctagctctgccccctcccctGgggggggagagatggggcgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	155059036	155059036	G	-	DEL	EFNA3	ENST00000470294	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFNA3	HGNC	ENSG00000143590	35	0	0	16	4	20	-	-	-	-	155059036	G	-	155059036	6	5	281	0	1	1	0	1	0	0	0	0	4987	1363	47	0		0	EFNA3	1	155059036	RNA	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	44766	155059036	94191585	88	31352										
ASH1L	0	genome.wustl.edu	37	chr1	155447691	155447691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcttacctgccaaagtctgtActgccctttcgttagaaggc	8	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	155447691	155447691	A	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.4970	p.V1657A	0.993	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	163	0	0	188	28	12.96	-	-	-	G	155447691	A	G	155447691	3	3	281	1	0	0	0	0	1	0	0	0	1045	391	14	5	4028	5	ASH1L	1	155447691	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	388655	155447691	93802930	89	31353										
ARHGEF2	0	genome.wustl.edu	37	chr1	155931554	155931554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggcccttgccaggcactgGggtttgggcccgagggtcca	18	12	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	155931554	155931554	G	A	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.1369	p.P457S	0.953	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	94	0	0	41	30	42.25	-	-	-	A	155931554	G	A	155931554	3	1	281	1	0	0	0	0	1	0	0	0	905	1232	43	4	1642	4	ARHGEF2	1	155931554	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	483863	155931554	93319067	90	31354										
SEMA4A	0	genome.wustl.edu	37	chr1	156145219	156145219	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagctgctctggccattccGcgttcctctctctgttccta	8	15	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	156145219	156145219	G	A	SNP	SEMA4A	ENST00000484155	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.041	-	-	-	no_errors	SEMA4A	HGNC	ENSG00000196189	174	0	0	148	61	29.19	-	-	-	A	156145219	G	A	156145219	1	1	281	0	1	0	0	0	0	0	0	0	14119	1102	38	1		1	SEMA4A	1	156145219	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	213665	156145219	93105402	91	31355										
IQGAP3	0	genome.wustl.edu	37	chr1	156520119	156520119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcggatctcctcaagccacaGcacagctccaggatcccctg	9	17	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	156520119	156520119	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	silent	c.1759	p.L587	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	136	1	0.73	133	20	13.07	-	-	-	A	156520119	G	A	156520119	2	1	281	1	0	0	0	0	0	0	0	1	7870	962	34	4		4	IQGAP3	1	156520119	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	374900	156520119	92730502	92	31356										
PEAR1	0	genome.wustl.edu	37	chr1	156877506	156877507	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccacagggctcctgcagctgINScccccctggctggatggtat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	156877506	156877507	-	C	INS	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	frame_shift_ins	c.749_750	p.G253fs	1.000:1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	143	1	0.69	70	42	37.5	-	-	-	C	156877507	-	C	156877506	7	5	281	1	0	1	1	0	0	0	0	0	11785	1319	46	0	771	0	PEAR1	1	156877506	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	357387	156877506	92373115	93	31357										
ARHGEF11	0	genome.wustl.edu	37	chr1	156928929	156928929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcttcgctgttccgcaggcGcgagtctgtagtgggagatc	14	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	156928929	156928929	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.1288	p.R430C	0.893	pfam_Regulat_G_prot_signal-like,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	73	0	0	67	25	27.17	-	-	-	A	156928929	G	A	156928929	3	1	281	1	0	0	0	0	1	0	0	0	898	1087	38	1	3504	1	ARHGEF11	1	156928929	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	51423	156928929	92321692	94	31358										
COPA	0	genome.wustl.edu	37	chr1	160276146	160276146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggcacctgatatgttaccgCttctgctgtacgtcaaagag	11	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	160276146	160276146	C	T	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1440	p.K480	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	161	0	0	182	41	18.39	-	-	-	T	160276146	C	T	160276146	2	4	281	1	0	0	0	0	0	0	0	1	3757	796	28	4		4	COPA	1	160276146	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3347217	160276146	88974475	95	31359										
VANGL2	0	genome.wustl.edu	37	chr1	160395031	160395031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acggcctcaaggatggcatcGttttcctcttaaaacgccag	9	12	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	160395031	160395031	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.1429	p.V477I	0.986	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	131	0	0	127	23	15.33	-	-	-	A	160395031	G	A	160395031	3	1	281	1	0	0	0	0	1	0	0	0	17217	1145	40	1	1455	1	VANGL2	1	160395031	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	118885	160395031	88855590	96	31360										
CD84	0	genome.wustl.edu	37	chr1	160535225	160535225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggttgtagcgcttggtggtGgtgtagggatcagcctgtgt	18	5	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	160535225	160535225	G	A	SNP	CD84	ENST00000311224	human	ensembl	69_37n	-1	known	silent	c.357	p.T119	0.776	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD84	HGNC	ENSG00000066294	286	0	0	280	40	12.5	-	-	-	A	160535225	G	A	160535225	2	1	281	1	0	0	0	0	0	0	0	1	3071	1335	47	4		4	CD84	1	160535225	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	140194	160535225	88715396	97	31361										
OLFML2B	0	genome.wustl.edu	37	chr1	161953687	161953687	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacagcaccccacagatgacGaagcagttgccgtagaaatt	9	11	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	161953687	161953687	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	silent	c.2031	p.F677	0.990	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	164	0	0	123	60	32.79	-	-	-	A	161953687	G	A	161953687	2	1	281	1	0	0	0	0	0	0	0	1	10931	1049	37	1		1	OLFML2B	1	161953687	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1418462	161953687	87296934	98	31362										
C1orf111	0	genome.wustl.edu	37	chr1	162344286	162344286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcacctctgggaagtcatagGcctccagctggctctctttg	11	13	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	162344286	162344286	G	A	SNP	C1orf111	ENST00000367935	human	ensembl	69_37n	-1	known	missense	c.338	p.A113V	0.322	NULL	NULL	-	no_errors	C1orf111	HGNC	ENSG00000171722	129	0	0	135	35	20.59	-	-	-	A	162344286	G	A	162344286	3	1	281	1	0	0	0	0	1	0	0	0	2003	1203	42	4	451	4	C1orf111	1	162344286	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	390599	162344286	86906335	99	31363										
PBX1	0	genome.wustl.edu	37	chr1	164816108	164816108	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttctttatactctcttcccTtttttttctgggtagaagcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	164816108	164816108	T	-	DEL	PBX1	ENST00000465089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.525	-	-	-	no_errors	PBX1	HGNC	ENSG00000185630	86	0	0	80	11	11.96	-	-	-	-	164816108	T	-	164816108	6	5	281	0	1	1	0	1	0	0	0	0	11565	1624	56	0		0	PBX1	1	164816108	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2471822	164816108	84434513	100	31364										
KIFAP3	0	genome.wustl.edu	37	chr1	169961353	169961353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagcggtcatccatgcttatGtggtaaagaacacacattgc	9	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	169961353	169961353	G	A	SNP	KIFAP3	ENST00000361580	human	ensembl	69_37n	-1	known	silent	c.1227	p.H409	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945	75	0	0	64	16	20	-	-	-	A	169961353	G	A	169961353	2	1	281	1	0	0	0	0	0	0	0	1	8363	1368	48	4		4	KIFAP3	1	169961353	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5145245	169961353	79289268	101	31365										
PRRX1	0	genome.wustl.edu	37	chr1	170705330	170705330	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgccaacagtcaactgaggAaaaaaaataattaaacaggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	170705330	170705330	A	-	DEL	PRRX1	ENST00000485529	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.995	-	-	-	no_errors	PRRX1	HGNC	ENSG00000116132	202	0	0	212	41	16.08	-	-	-	-	170705330	A	-	170705330	6	5	281	0	1	1	0	1	0	0	0	0	12692	261	9	0		0	PRRX1	1	170705330	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	743977	170705330	78545291	102	31366										
GPR52	0	genome.wustl.edu	37	chr1	174418146	174418148	+	In_Frame_Del	DEL	CTT	CTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggacaatccaactctgtcCttcttaacaacctggcttgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	174418146	174418148	CTT	-	DEL	GPR52	ENST00000367685	human	ensembl	69_37n	1	known	in_frame_del	c.897_899	p.F300in_frame_del	0.994:1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737	229	0	0	284	39	12.04	-	-	-	-	174418148	CTT	-	174418146	7	5	281	1	0	1	0	1	0	0	0	0	6748	668	24	0	899	0	GPR52	1	174418146	In_Frame_Del	DEL	CTT	TCGA-AN-A0AK-01A-21W-A019-09	3712816	174418146	74832475	103	31367										
TNN	0	genome.wustl.edu	37	chr1	175092592	175092592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgacggagaatatggccactGtctcctgggacccggttcag	13	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	175092592	175092592	G	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.2707	p.V903I	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	493	0	0	509	76	12.97	-	-	-	A	175092592	G	A	175092592	3	1	281	1	0	0	0	0	1	0	0	0	16418	1377	48	4	2749	4	TNN	1	175092592	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	674446	175092592	74158029	104	31368										
PAPPA2	0	genome.wustl.edu	37	chr1	176564696	176564696	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacccccaggtggctgatgtGcgcaagacctgctttgaccc	12	14	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	176564696	176564696	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	silent	c.1956	p.V652	0.027	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	94	0	0	142	26	15.48	-	-	-	A	176564696	G	A	176564696	2	1	281	1	0	0	0	0	0	0	0	1	11506	1306	46	4		4	PAPPA2	1	176564696	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1472104	176564696	72685925	105	31369										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185267688	185267688	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagcatctaaataagtacaAttttcaccaactctgtggta	6	9	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	185267688	185267688	A	T	SNP	IVNS1ABP	ENST00000494880	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	12	0	0	9	7	43.75	-	-	-	T	185267688	A	T	185267688	1	4	281	0	1	0	0	0	0	0	0	0	7984	116	4	5		5	IVNS1ABP	1	185267688	RNA	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	8702992	185267688	63982933	106	31370										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185278213	185278213	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atttaacgtgagaaattccaTgaggatcactatcactatta	6	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	185278213	185278213	T	C	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	missense	c.203	p.H68R	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	79	0	0	114	21	15.56	-	-	-	C	185278213	T	C	185278213	3	2	281	1	0	0	0	0	1	0	0	0	7984	1464	51	5	1773	5	IVNS1ABP	1	185278213	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	10525	185278213	63972408	107	31371										
HMCN1	0	genome.wustl.edu	37	chr1	185880816	185880816	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtctttcagggaagctgatAaaaaagggatttggcctgca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	185880816	185880816	A	-	DEL	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	frame_shift_del	c.804	p.K270fs	0.813	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	154	0	0	177	29	13.88	-	-	-	-	185880816	A	-	185880816	7	5	281	1	0	1	0	1	0	0	0	0	7271	352	13	0	826	0	HMCN1	1	185880816	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	602603	185880816	63369805	108	31372										
HMCN1	0	genome.wustl.edu	37	chr1	185950172	185950172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaaccagtttggaaagatcCagtcagagacaacagtaaca	8	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	185950172	185950172	C	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.2629	p.Q877E	0.999	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	156	0	0	186	28	13.08	-	-	-	G	185950172	C	G	185950172	3	3	281	1	0	0	0	0	1	0	0	0	7271	595	21	4	2695	4	HMCN1	1	185950172	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	69356	185950172	63300449	109	31373										
HMCN1	0	genome.wustl.edu	37	chr1	186031692	186031692	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acattggaagatgtgaaggtAaaagagaaacagagtgttac	12	3	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	186031692	186031692	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.7473	p.V2491	0.950	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	121	0	0	105	16	13.22	-	-	-	G	186031692	A	G	186031692	2	3	281	1	0	0	0	0	0	0	0	1	7271	349	13	5		5	HMCN1	1	186031692	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	81520	186031692	63218929	110	31374										
PRG4	0	genome.wustl.edu	37	chr1	186276040	186276040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaccactcccaaggagcctGcacccaccaccaccaaggag	7	20	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	186276040	186276040	G	A	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	missense	c.1189	p.A397T	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	33	0	0	46	9	16.36	-	-	-	A	186276040	G	A	186276040	3	1	281	1	0	0	0	0	1	0	0	0	12562	1319	46	4	1211	4	PRG4	1	186276040	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	244348	186276040	62974581	111	31375										
TROVE2	0	genome.wustl.edu	37	chr1	193053997	193053997	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatggaaagttaccttactgAaaaaaaaaaaagaaggaaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	193053997	193053997	A	-	DEL	TROVE2	ENST00000432079	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747	34	0	0	20	21	43.75	-	-	-	-	193053997	A	-	193053997	6	5	281	0	1	1	0	1	0	0	0	0	16672	261	9	0		0	TROVE2	1	193053997	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	6777957	193053997	56196624	112	31376										
CDC73	0	genome.wustl.edu	37	chr1	193205421	193205421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgtttttgtgcagggtcctgCatggcagttcaaaggttggc	14	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	193205421	193205421	C	T	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.1352	p.A451V	0.999	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	194	0	0	205	72	25.99	-	-	-	T	193205421	C	T	193205421	3	4	281	1	0	0	0	0	1	0	0	0	3114	710	25	4	1410	4	CDC73	1	193205421	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	151424	193205421	56045200	113	31377										
ASPM	0	genome.wustl.edu	37	chr1	197102624	197102624	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagtctgtttaacctacaccGagcagtataagctctgagag	9	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	197102624	197102624	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.2275	p.R759	0.996	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	120	0	0	108	58	34.94	-	-	-	T	197102624	G	T	197102624	2	4	281	1	0	0	0	0	0	0	0	1	1060	1057	37	3		3	ASPM	1	197102624	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3897203	197102624	52147997	114	31378										
PRELP	0	genome.wustl.edu	37	chr1	203455873	203455873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgccccaacgacctagtggCgttccatgacttctcctcgg	9	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	203455873	203455873	C	T	SNP	PRELP	ENST00000343110	human	ensembl	69_37n	1	known	missense	c.1013	p.A338V	0.142	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	86	0	0	82	18	18	-	-	-	T	203455873	C	T	203455873	3	4	281	1	0	0	0	0	1	0	0	0	12554	768	27	1	1019	1	PRELP	1	203455873	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6353249	203455873	45794748	115	31379										
PM20D1	0	genome.wustl.edu	37	chr1	205814471	205814471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accatcacagagttcttgtcGtccagtgtgccccgaccata	8	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	205814471	205814471	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	silent	c.471	p.D157	1.000	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	163	0	0	143	28	16.37	-	-	-	A	205814471	G	A	205814471	2	1	281	1	0	0	0	0	0	0	0	1	12202	1136	40	1		1	PM20D1	1	205814471	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2358598	205814471	43436150	116	31380										
SRGAP2	0	genome.wustl.edu	37	chr1	206516354	206516355	+	Frame_Shift_Del	DEL	TT	TT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgaggactcaggaagactcTttaaaaaggtacagagatat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	206516354	206516355	TT	-	DEL	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	frame_shift_del	c.155_156	p.*53fs	1.000:1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	179	0	0	118	47	28.48	-	-	-	-	206516355	TT	-	206516354	7	5	281	1	0	1	0	1	0	0	0	0	15237	1609	56	0	157	0	SRGAP2	1	206516354	Frame_Shift_Del	DEL	TT	TCGA-AN-A0AK-01A-21W-A019-09	701883	206516354	42734267	117	31381										
RASSF5	0	genome.wustl.edu	37	chr1	206758045	206758045	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagagtgaacccaaccagacCgttcccttcctacctgtgtc	7	15	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	206758045	206758045	C	T	SNP	RASSF5	ENST00000481486	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RASSF5	HGNC	ENSG00000136653	58	0	0	78	10	11.36	-	-	-	T	206758045	C	T	206758045	1	4	281	0	1	0	0	0	0	0	0	0	13172	667	23	1		1	RASSF5	1	206758045	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	241691	206758045	42492576	118	31382										
CR1	0	genome.wustl.edu	37	chr1	207697123	207697123	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccatatactgcaccagcaatGacgatcaagtgggcatctgg	10	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	207697123	207697123	G	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.655	p.D219N	0.046	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	141	0	0	97	91	48.4	-	-	-	A	207697123	G	A	207697123	3	1	281	1	0	0	0	0	1	0	0	0	3870	1290	45	2	673	2	CR1	1	207697123	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	939078	207697123	41553498	119	31383										
LPGAT1	0	genome.wustl.edu	37	chr1	211952290	211952290	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catgtgtgactgttggtttcCtgtatccaaggatccaggtt	11	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	211952290	211952290	C	A	SNP	LPGAT1	ENST00000366996	human	ensembl	69_37n	-1	known	missense	c.824	p.R275M	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPGAT1	HGNC	ENSG00000123684	113	0	0	169	35	17.16	-	-	-	A	211952290	C	A	211952290	3	1	281	1	0	0	0	0	1	0	0	0	8980	681	24	4	300	4	LPGAT1	1	211952290	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4255167	211952290	37298331	120	31384										
RPS6KC1	0	genome.wustl.edu	37	chr1	213446107	213446107	+	RNA	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaagaccgttataggaaatGggggggaaatggctaaaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	213446107	213446107	G	-	DEL	RPS6KC1	ENST00000490299	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.109	-	-	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	64	0	0	87	14	13.86	-	-	-	-	213446107	G	-	213446107	6	5	281	0	1	1	0	1	0	0	0	0	13744	1363	47	0		0	RPS6KC1	1	213446107	RNA	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1493817	213446107	35804514	121	31385										
CENPF	0	genome.wustl.edu	37	chr1	214818761	214818763	+	In_Frame_Del	DEL	GAA	GAA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaaggttattgtctgccttGaagaagaactctcagtggtc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	214818761	214818763	GAA	-	DEL	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	in_frame_del	c.5848_5850	p.E1952in_frame_del	0.995:1.000:1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	174	0	0	182	42	18.75	-	-	-	-	214818763	GAA	-	214818761	7	5	281	1	0	1	0	1	0	0	0	0	3260	1291	45	0	5894	0	CENPF	1	214818761	In_Frame_Del	DEL	GAA	TCGA-AN-A0AK-01A-21W-A019-09	1372654	214818761	34431860	122	31386										
GPATCH2	0	genome.wustl.edu	37	chr1	217793585	217793585	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttattattattgtgattctCtctatagtccttgcttggtt	6	6	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	217793585	217793585	C	A	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	nonsense	c.313	p.E105*	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	145	0	0	169	31	15.5	-	-	-	A	217793585	C	A	217793585	4	1	281	1	0	0	0	0	0	1	0	0	6641	922	32	2	1309	2	GPATCH2	1	217793585	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2974824	217793585	31457036	123	31387										
DEGS1	0	genome.wustl.edu	37	chr1	224377462	224377462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcaatgactctggctattcAtgagattgcccacaatgctg	8	11	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	224377462	224377462	A	G	SNP	DEGS1	ENST00000323699	human	ensembl	69_37n	1	known	missense	c.266	p.H89R	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS1	HGNC	ENSG00000143753	205	0	0	122	133	52.16	-	-	-	G	224377462	A	G	224377462	3	3	281	1	0	0	0	0	1	0	0	0	4458	217	8	5	272	5	DEGS1	1	224377462	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6583877	224377462	24873159	124	31388										
PYCR2	0	genome.wustl.edu	37	chr1	226109562	226109562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaatgagggcctcacatagGcaggcccgctgccactgagc	12	14	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	226109562	226109562	G	A	SNP	PYCR2	ENST00000343818	human	ensembl	69_37n	-1	known	missense	c.536	p.A179V	1.000	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR2	HGNC	ENSG00000143811	24	0	0	12	10	45.45	-	-	-	A	226109562	G	A	226109562	3	1	281	1	0	0	0	0	1	0	0	0	12939	1203	42	4	442	4	PYCR2	1	226109562	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1732100	226109562	23141059	125	31389										
OBSCN	0	genome.wustl.edu	37	chr1	228432211	228432211	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccacaggcgggcaaagcagaTgctggggagtacagctgtga	16	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	228432211	228432211	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.3420	p.D1140	0.992	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	128	0	0	138	26	15.85	-	-	-	C	228432211	T	C	228432211	2	2	281	1	0	0	0	0	0	0	0	1	10885	1461	51	5		5	OBSCN	1	228432211	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2322649	228432211	20818410	126	31390										
OBSCN	0	genome.wustl.edu	37	chr1	228476543	228476544	+	Frame_Shift_Ins	INS	-	-	TG													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagatgctggggagtactccINStgtgtgtgtggggaggagag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	228476543	228476544	-	TG	INS	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_ins	c.10293_10294	p.G3434fs	0.000:0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	58	0	0	36	4	10	-	-	-	TG	228476544	-	TG	228476543	7	5	281	1	0	1	1	0	0	0	0	0	10885	668	24	0	10439	0	OBSCN	1	228476543	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	44332	228476543	20774078	127	31391										
PCNXL2	0	genome.wustl.edu	37	chr1	233394715	233394715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaggtgacttgctttgtaccCgttcccttatggagccccgg	12	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	233394715	233394715	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.893	p.R298Q	0.001	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	96	0	0	75	31	29.25	-	-	-	T	233394715	C	T	233394715	3	4	281	1	0	0	0	0	1	0	0	0	11665	652	23	1	5640	1	PCNXL2	1	233394715	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4918172	233394715	15855906	128	31392										
ARID4B	0	genome.wustl.edu	37	chr1	235324563	235324563	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttactccaaagactcccagActgcagctgcgcgccagctc	8	17	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	235324563	235324563	A	G	SNP	ARID4B	ENST00000474953	human	ensembl	69_37n	-1	known	silent	c.2070	p.S690	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARID4B	HGNC	ENSG00000054267	100	0	0	139	21	13.12	-	-	-	G	235324563	A	G	235324563	2	3	281	1	0	0	0	0	0	0	0	1	922	290	10	5		5	ARID4B	1	235324563	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1929848	235324563	13926058	129	31393										
ZP4	0	genome.wustl.edu	37	chr1	238048751	238048751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagtgctgggtgttgcccaaCactgttgtaggagcagcccc	13	12	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	238048751	238048751	C	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.1100	p.C367Y	0.999	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	81	0	0	61	43	41.35	-	-	-	T	238048751	C	T	238048751	3	4	281	1	0	0	0	0	1	0	0	0	18311	478	17	4	542	4	ZP4	1	238048751	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2724188	238048751	11201870	130	31394										
FH	0	genome.wustl.edu	37	chr1	241669359	241669359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaagccaattctagtatttAaacctgtaccaacagcagtg	6	10	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	241669359	241669359	A	G	SNP	FH	ENST00000366560	human	ensembl	69_37n	-1	known	missense	c.848	p.L283S	0.991	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Fum_hydII	pfam_Lyase1_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483	139	0	0	89	40	31.01	-	-	-	G	241669359	A	G	241669359	3	3	281	1	0	0	0	0	1	0	0	0	5921	372	13	5	704	5	FH	1	241669359	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3620608	241669359	7581262	131	31395										
FH	0	genome.wustl.edu	37	chr1	241680545	241680545	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatctcacggtctgggcgccAtaatacttatcatttggcac	9	11	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	241680545	241680545	A	C	SNP	FH	ENST00000366560	human	ensembl	69_37n	-1	known	nonsense	c.204	p.Y68*	0.998	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Fum_hydII	pfam_Lyase1_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483	84	0	0	90	22	19.47	-	-	-	C	241680545	A	C	241680545	4	2	281	1	0	0	0	0	0	1	0	0	5921	224	8	5	1364	5	FH	1	241680545	Nonsense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	11186	241680545	7570076	132	31396										
ZNF238	0	genome.wustl.edu	37	chr1	244217994	244217997	+	Frame_Shift_Del	DEL	GAAA	GAAA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacatggaacatagcactgtGaaagaaagtgtgagcactaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAAA	GAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	244217994	244217997	GAAA	-	DEL	ZNF238	ENST00000358704	human	ensembl	69_37n	1	known	frame_shift_del	c.918_921	p.E308fs	1.000:1.000:1.000:1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF238	HGNC	ENSG00000179456	100	0	0	82	12	12.77	-	-	-	-	244217997	GAAA	-	244217994	7	5	281	1	0	1	0	1	0	0	0	0	17886	1277	45	0	924	0	ZNF238	1	244217994	Frame_Shift_Del	DEL	GAAA	TCGA-AN-A0AK-01A-21W-A019-09	2537449	244217994	5032627	133	31397										
OR6F1	0	genome.wustl.edu	37	chr1	247875544	247875544	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagaagtggttgatggcacGggggccacagaaggacaggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	247875544	247875544	G	-	DEL	OR6F1	ENST00000302084	human	ensembl	69_37n	-1	known	frame_shift_del	c.514	p.R172fs	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	124	0	0	124	19	13.1	-	-	-	-	247875544	G	-	247875544	7	5	281	1	0	1	0	1	0	0	0	0	11274	1116	39	0	416	0	OR6F1	1	247875544	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	3657550	247875544	1375077	134	31398										
OR14C36	0	genome.wustl.edu	37	chr1	248512383	248512384	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctcaggtcttcctcgtggINSttttttttgtatatgtggag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	1	248512383	248512384	-	T	INS	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	frame_shift_ins	c.307_308	p.V106fs	0.000:0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	161	1	0.62	153	27	15	-	-	-	T	248512384	-	T	248512383	7	5	281	1	0	1	1	0	0	0	0	0	11019	1261	44	0	309	0	OR14C36	1	248512383	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	636839	248512383	738238	135	31399										
PXDN	0	genome.wustl.edu	37	chr2	1647230	1647230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaactccgccaccctgaacaCgtcgctctgcacccgggtga	10	17	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	1647230	1647230	C	T	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.3862	p.V1288M	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	72	0	0	36	15	29.41	-	-	-	T	1647230	C	T	1647230	3	4	281	1	0	0	0	0	1	0	0	0	12930	536	19	1	597	1	PXDN	2	1647230	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		1647230	241552143	136	31400										
PXDN	0	genome.wustl.edu	37	chr2	1652984	1652984	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggatcatgacagagaagcaGggggggtcgttgctgcacac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	1652984	1652984	G	-	DEL	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	frame_shift_del	c.2568	p.C857fs	0.996	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	25	0	0	7	6	46.15	-	-	-	-	1652984	G	-	1652984	7	5	281	1	0	1	0	1	0	0	0	0	12930	987	35	0	1899	0	PXDN	2	1652984	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	5754	1652984	241546389	137	31401										
CPSF3	0	genome.wustl.edu	37	chr2	9597112	9597112	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacctgctctgaaagtgttcAaaaatattactgtaatacaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	9597112	9597112	A	-	DEL	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	frame_shift_del	c.1654	p.N553fs	1.000	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	67	0	0	57	17	22.37	-	-	-	-	9597112	A	-	9597112	7	5	281	1	0	1	0	1	0	0	0	0	3856	131	5	0	1708	0	CPSF3	2	9597112	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	7944128	9597112	233602261	138	31402										
RAD51AP2	0	genome.wustl.edu	37	chr2	17698043	17698043	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctggttattagattttgaAtaccaattataccaatttgc	5	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	17698043	17698043	A	T	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	missense	c.1640	p.I547N	0.910	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	72	0	0	46	22	32.35	-	-	-	T	17698043	A	T	17698043	3	4	281	1	0	0	0	0	1	0	0	0	13070	101	4	5	1851	5	RAD51AP2	2	17698043	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	8100931	17698043	225501330	139	31403										
KIF3C	0	genome.wustl.edu	37	chr2	26204466	26204466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctccacccaggtcccctgCatggtataggtcttgccagt	11	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	26204466	26204466	C	T	SNP	KIF3C	ENST00000264712	human	ensembl	69_37n	-1	known	missense	c.321	p.M107I	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731	119	0	0	58	12	17.14	-	-	-	T	26204466	C	T	26204466	3	4	281	1	0	0	0	0	1	0	0	0	8354	710	25	4	2092	4	KIF3C	2	26204466	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	8506423	26204466	216994907	140	31404										
HADHA	0	genome.wustl.edu	37	chr2	26414300	26414300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggacttcgttgaaggagacgCaacacgggctccaggctaaa	13	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	26414300	26414300	C	T	SNP	HADHA	ENST00000492433	human	ensembl	69_37n	-1	putative	missense	c.656	p.C219Y	0.000	NULL	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	HADHA	HGNC	ENSG00000084754	54	0	0	25	7	21.88	-	-	-	T	26414300	C	T	26414300	3	4	281	1	0	0	0	0	1	0	0	0	6994	725	25	4		4	HADHA	2	26414300	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	209834	26414300	216785073	141	31405										
CAD	0	genome.wustl.edu	37	chr2	27447984	27447984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggggtgctggctcggtatgGggtccgggtcctgggcacac	19	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	27447984	27447984	G	T	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.1493	p.G498V	0.993	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	47	0	0	39	18	31.58	-	-	-	T	27447984	G	T	27447984	3	4	281	1	0	0	0	0	1	0	0	0	2590	1232	43	4	1535	4	CAD	2	27447984	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1033684	27447984	215751389	142	31406										
IFT172	0	genome.wustl.edu	37	chr2	27672430	27672430	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtccacatagtcttcatacCtgtgaagatgttcagagagc	10	9	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	27672430	27672430	C	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	splice_site	c.4161-1	e38-1	1.000	-	-	-	no_errors	IFT172	HGNC	ENSG00000138002	388	0	0	248	61	19.61	-	-	-	A	27672430	C	A	27672430	5	1	281	1	0	0	0	0	0	0	1	0	7611	695	24	4	1133	4	IFT172	2	27672430	Splice_Site	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	224446	27672430	215526943	143	31407										
ALK	0	genome.wustl.edu	37	chr2	29462561	29462561	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttacactggggcaggcgtcCtctccctgctgcccaaccag	10	17	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	29462561	29462561	C	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.2340	p.E780D	0.983	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	56	0	0	36	7	16.28	-	-	-	A	29462561	C	A	29462561	3	1	281	1	0	0	0	0	1	0	0	0	525	680	24	4	2590	4	ALK	2	29462561	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1790131	29462561	213736812	144	31408										
XDH	0	genome.wustl.edu	37	chr2	31588950	31588951	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacaatccggtttgctggaaINScccccaacatttttgcaaca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	31588950	31588951	-	C	INS	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2348_2347	p.V783fs	0.997:0.996	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	169	0	0	138	24	14.81	-	-	-	C	31588951	-	C	31588950	7	5	281	1	0	1	1	0	0	0	0	0	17523	43	2	0	1713	0	XDH	2	31588950	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2126389	31588950	211610423	145	31409										
MEMO1	0	genome.wustl.edu	37	chr2	32117107	32117107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaaagagattactaggatcCgctagatatttactgaagag	9	6	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	32117107	32117107	C	T	SNP	MEMO1	ENST00000422936	human	ensembl	69_37n	-1	known	missense	c.179	p.R60Q	1.000	pfam_UPF0103/Memo-related	pfam_UPF0103/Memo-related	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MEMO1	HGNC	ENSG00000162959	271	1	0.37	221	124	35.94	-	-	-	T	32117107	C	T	32117107	3	4	281	1	0	0	0	0	1	0	0	0	9542	639	23	1	375	1	MEMO1	2	32117107	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	528157	32117107	211082266	146	31410										
BIRC6	0	genome.wustl.edu	37	chr2	32602710	32602710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctgctgtggataaagttaTatttgtggatgattatgcag	11	4	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	32602710	32602710	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.380	p.I127T	1.000	superfamily_WD40_repeat_dom	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	126	0	0	113	74	39.57	-	-	-	C	32602710	T	C	32602710	3	2	281	1	0	0	0	0	1	0	0	0	1443	1406	49	5	386	5	BIRC6	2	32602710	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	485603	32602710	210596663	147	31411										
HEATR5B	0	genome.wustl.edu	37	chr2	37304104	37304104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atttaccgtttctggaaatgCgctgcccaacattctcccca	6	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	37304104	37304104	C	T	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	missense	c.397	p.A133T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	147	0	0	119	89	42.79	-	-	-	T	37304104	C	T	37304104	3	4	281	1	0	0	0	0	1	0	0	0	7083	768	27	1	5950	1	HEATR5B	2	37304104	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4701394	37304104	205895269	148	31412										
PRKCE	0	genome.wustl.edu	37	chr2	46237550	46237551	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcttaaagaaggacgtcatINSccttcaggatgatgacgtgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	46237550	46237551	-	A	INS	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	frame_shift_ins	c.1331_1332	p.L445fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	223	0	0	249	37	12.94	-	-	-	A	46237551	-	A	46237550	7	5	281	1	0	1	1	0	0	0	0	0	12592	1435	50	0	1369	0	PRKCE	2	46237550	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	8933446	46237550	196961823	149	31413										
PRKCE	0	genome.wustl.edu	37	chr2	46313350	46313350	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcttctctcctttcaggacCgcctctttttcgtcatggaa	6	13	5	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	46313350	46313350	C	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	missense	c.1441	p.R481S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	480	0	0	410	87	17.51	-	-	-	A	46313350	C	A	46313350	3	1	281	1	0	0	0	0	1	0	0	0	12592	652	23	3	1483	3	PRKCE	2	46313350	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	75800	46313350	196886023	150	31414										
KIAA1841	0	genome.wustl.edu	37	chr2	61315532	61315534	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttttaacaaaagaaacagaAagaagaattccttgcattcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	61315532	61315534	AAG	-	DEL	KIAA1841	ENST00000356719	human	ensembl	69_37n	1	known	in_frame_del	c.1017_1019	p.R341in_frame_del	1.000:1.000:1.000	pfam_DUF3342	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	63	0	0	45	24	34.78	-	-	-	-	61315534	AAG	-	61315532	7	5	281	1	0	1	0	1	0	0	0	0	8313	11	1	0	1047	0	KIAA1841	2	61315532	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	15002182	61315532	181883841	151	31415										
ARHGAP25	0	genome.wustl.edu	37	chr2	68962637	68962637	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgcaggatctggggtacttCggatgatttaaggctacaga	14	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	68962637	68962637	C	T	SNP	ARHGAP25	ENST00000485700	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	30	0	0	19	8	29.63	-	-	-	T	68962637	C	T	68962637	1	4	281	0	1	0	0	0	0	0	0	0	876	899	31	1		1	ARHGAP25	2	68962637	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7647105	68962637	174236736	152	31416										
GKN2	0	genome.wustl.edu	37	chr2	69174335	69174335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggagggatgttctgatggtCcatcttcaggataaagcagg	14	6	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	69174335	69174335	C	G	SNP	GKN2	ENST00000328895	human	ensembl	69_37n	-1	known	missense	c.259	p.D87H	0.995	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	GKN2	HGNC	ENSG00000183607	126	0	0	144	34	19.1	-	-	-	G	69174335	C	G	69174335	3	3	281	1	0	0	0	0	1	0	0	0	6477	855	30	2	307	2	GKN2	2	69174335	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	211698	69174335	174025038	153	31417										
AAK1	0	genome.wustl.edu	37	chr2	69736497	69736497	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagcacgttgggttttgggGgatgagggtggagtgagaga	20	4	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	69736497	69736497	G	T	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.1872	p.S624	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	68	0	0	56	14	20	-	-	-	T	69736497	G	T	69736497	2	4	281	1	0	0	0	0	0	0	0	1	16	1219	43	4		4	AAK1	2	69736497	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	562162	69736497	173462876	154	31418										
GMCL1	0	genome.wustl.edu	37	chr2	70068153	70068153	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttgttgccattttggcagcAgcttgtttgctgcagttggt	13	7	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	70068153	70068153	A	C	SNP	GMCL1	ENST00000282570	human	ensembl	69_37n	1	known	silent	c.561	p.A187	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	GMCL1	HGNC	ENSG00000087338	29	0	0	45	14	23.73	-	-	-	C	70068153	A	C	70068153	2	2	281	1	0	0	0	0	0	0	0	1	6537	175	7	5		5	GMCL1	2	70068153	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	331656	70068153	173131220	155	31419										
WDR54	0	genome.wustl.edu	37	chr2	74652808	74652808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctatgaccttgcggagatcCggagattcagcagtgtgtga	14	8	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	74652808	74652808	C	T	SNP	WDR54	ENST00000348227	human	ensembl	69_37n	1	known	missense	c.985	p.R329W	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR54	HGNC	ENSG00000005448	176	0	0	97	13	11.71	-	-	-	T	74652808	C	T	74652808	3	4	281	1	0	0	0	0	1	0	0	0	17403	643	23	1	1019	1	WDR54	2	74652808	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4584655	74652808	168546565	156	31420										
CTNNA2	0	genome.wustl.edu	37	chr2	80846327	80846327	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgctgagggagctccgatcGggagtggaagcagtgattcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	80846327	80846327	G	-	DEL	CTNNA2	ENST00000402739	human	ensembl	69_37n	1	putative	frame_shift_del	c.2548	p.S851fs	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	33	0	0	19	7	25.93	-	-	-	-	80846327	G	-	80846327	7	5	281	1	0	1	0	1	0	0	0	0	4045	1131	39	0		0	CTNNA2	2	80846327	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	6193519	80846327	162353046	157	31421										
POLR1A	0	genome.wustl.edu	37	chr2	86310223	86310223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accttcattcttccacagggCagaaaggtgttcgcgggcac	11	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	86310223	86310223	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.799	p.A267T	0.054	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	56	0	0	42	13	23.64	-	-	-	T	86310223	C	T	86310223	3	4	281	1	0	0	0	0	1	0	0	0	12283	710	25	4	4475	4	POLR1A	2	86310223	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5463896	86310223	156889150	158	31422										
PTCD3	0	genome.wustl.edu	37	chr2	86358229	86358232	+	Frame_Shift_Del	DEL	AGTA	AGTA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttcagtcagccatgagcatAgtaagtatcatttctttatt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGTA	AGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	86358229	86358232	AGTA	-	DEL	PTCD3	ENST00000254630	human	ensembl	69_37n	1	known	frame_shift_del	c.1266	p.C423fs	0.968	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	68	0	0	69	13	15.85	-	-	-	-	86358232	AGTA	-	86358229	7	5	281	1	0	1	0	1	0	0	0	0	12809	434	15	0	1328	0	PTCD3	2	86358229	Frame_Shift_Del	DEL	AGTA	TCGA-AN-A0AK-01A-21W-A019-09	48006	86358229	156841144	159	31423										
THNSL2	0	genome.wustl.edu	37	chr2	88482314	88482315	+	Frame_Shift_Del	DEL	TC	TC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gactgtccagcagggagactTctctctctctgaggctgtta							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	88482314	88482315	TC	-	DEL	THNSL2	ENST00000324166	human	ensembl	69_37n	1	known	frame_shift_del	c.899_900	p.S303fs	1.000:1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	58	0	0	48	11	18.64	-	-	-	-	88482315	TC	-	88482314	7	5	281	1	0	1	0	1	0	0	0	0	15958	1783	62	0	917	0	THNSL2	2	88482314	Frame_Shift_Del	DEL	TC	TCGA-AN-A0AK-01A-21W-A019-09	2124085	88482314	154717059	160	31424										
ITPRIPL1	0	genome.wustl.edu	37	chr2	96992655	96992655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaaagacatggggtggccgTtccaggccgatggccaggaa	16	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	96992655	96992655	T	C	SNP	ITPRIPL1	ENST00000361124	human	ensembl	69_37n	1	known	missense	c.310	p.F104L	0.928	NULL	NULL	-	no_errors	ITPRIPL1	HGNC	ENSG00000198885	105	0	0	61	8	11.59	-	-	-	C	96992655	T	C	96992655	3	2	281	1	0	0	0	0	1	0	0	0	7978	1725	60	5	326	5	ITPRIPL1	2	96992655	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	8510341	96992655	146206718	161	31425										
CNGA3	0	genome.wustl.edu	37	chr2	99006235	99006235	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aactggtatctgcttatttgCaggtaagcgacaggggtgga	14	6	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	99006235	99006235	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	silent	c.564	p.C188	1.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	76	0	0	58	20	25.64	-	-	-	T	99006235	C	T	99006235	2	4	281	1	0	0	0	0	0	0	0	1	3628	718	25	4		4	CNGA3	2	99006235	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2013580	99006235	144193138	162	31426										
INPP4A	0	genome.wustl.edu	37	chr2	99170797	99170797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actccatccatgggctgaacGctgcacggcctgactacatt	9	14	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	99170797	99170797	G	A	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	missense	c.1426	p.A476T	0.995	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4A	HGNC	ENSG00000040933	34	0	0	39	9	18.75	-	-	-	A	99170797	G	A	99170797	3	1	281	1	0	0	0	0	1	0	0	0	7806	1087	38	1	1480	1	INPP4A	2	99170797	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	164562	99170797	144028576	163	31427										
MGAT4A	0	genome.wustl.edu	37	chr2	99256589	99256590	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attaagtcaccaaccgtgagINStttttggatttttcctgata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	99256589	99256590	-	T	INS	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1123_1122	p.L374fs	1.000:1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	113	0	0	113	20	15.04	-	-	-	T	99256590	-	T	99256589	7	5	281	1	0	1	1	0	0	0	0	0	9616	1029	36	0	587	0	MGAT4A	2	99256589	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	85792	99256589	143942784	164	31428										
TSGA10	0	genome.wustl.edu	37	chr2	99722093	99722093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccggagaatagcatgtgccGttgttgatttaggactctta	12	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	99722093	99722093	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.278	p.T93M	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	448	0	0	367	144	28.18	-	-	-	A	99722093	G	A	99722093	3	1	281	1	0	0	0	0	1	0	0	0	16713	1145	40	1	1874	1	TSGA10	2	99722093	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	465504	99722093	143477280	165	31429										
IL1R2	0	genome.wustl.edu	37	chr2	102641101	102641101	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacatagagagcgcctacccGggaggccgcgtgaccgaggg	16	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	102641101	102641101	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	silent	c.858	p.P286	0.000	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like,prints_Interleukin-1_rcpt_II	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	46	0	0	31	19	37.25	-	-	-	A	102641101	G	A	102641101	2	1	281	1	0	0	0	0	0	0	0	1	7713	1103	39	1		1	IL1R2	2	102641101	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2919008	102641101	140558272	166	31430										
SLC9A2	0	genome.wustl.edu	37	chr2	103324829	103324829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctctctaaagaccagtctGgctcagagagggaagacagt	11	9	4	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	103324829	103324829	G	A	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.2320	p.G774S	0.008	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	260	1	0.38	174	43	19.72	-	-	-	A	103324829	G	A	103324829	3	1	281	1	0	0	0	0	1	0	0	0	14801	1348	47	4	2366	4	SLC9A2	2	103324829	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	683728	103324829	139874544	167	31431										
UXS1	0	genome.wustl.edu	37	chr2	106717538	106717538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgaccgggctgctgacgttGctgttcatgagagccacgag	14	10	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	106717538	106717538	G	A	SNP	UXS1	ENST00000283148	human	ensembl	69_37n	-1	known	silent	c.960	p.S320	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	63	0	0	52	13	20	-	-	-	A	106717538	G	A	106717538	2	1	281	1	0	0	0	0	0	0	0	1	17206	1310	46	4		4	UXS1	2	106717538	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3392709	106717538	136481835	168	31432										
RANBP2	0	genome.wustl.edu	37	chr2	109384566	109384566	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcagagtctgttaaaagcaTttttagtagtgaaaaatcaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	109384566	109384566	T	-	DEL	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	frame_shift_del	c.7571	p.F2525fs	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	743	0	0	656	144	17.84	-	-	-	-	109384566	T	-	109384566	7	5	281	1	0	1	0	1	0	0	0	0	13111	1493	52	0	7649	0	RANBP2	2	109384566	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2667028	109384566	133814807	169	31433										
CKAP2L	0	genome.wustl.edu	37	chr2	113498498	113498500	+	In_Frame_Del	DEL	GAC	GAC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccctctcttttggagaaaGacaagacttcacagattcca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	113498498	113498500	GAC	-	DEL	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	in_frame_del	c.1909_1907	p.CL636in_frame_delF	0.012:0.008:0.007	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	183	0	0	153	36	18.85	-	-	-	-	113498500	GAC	-	113498498	7	5	281	1	0	1	0	1	0	0	0	0	3473	942	33	0	336	0	CKAP2L	2	113498498	In_Frame_Del	DEL	GAC	TCGA-AN-A0AK-01A-21W-A019-09	4113932	113498498	129700875	170	31434										
CKAP2L	0	genome.wustl.edu	37	chr2	113514376	113514376	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctctcaggttctgttaagAtatcgagcaagttctctttg	8	9	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	113514376	113514376	A	T	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.572	p.I191N	0.000	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	120	0	0	111	52	31.9	-	-	-	T	113514376	A	T	113514376	3	4	281	1	0	0	0	0	1	0	0	0	3473	333	12	5	1689	5	CKAP2L	2	113514376	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	15878	113514376	129684997	171	31435										
DPP10	0	genome.wustl.edu	37	chr2	116599892	116599892	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaaggaagaaatatctgtgCtaccacaggaaccagaagaa	10	7	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	116599892	116599892	C	G	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.2374	p.L792V	0.594	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	103	0	0	104	19	15.45	-	-	-	G	116599892	C	G	116599892	3	3	281	1	0	0	0	0	1	0	0	0	4762	796	28	4	2635	4	DPP10	2	116599892	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3085516	116599892	126599481	172	31436										
CNTNAP5	0	genome.wustl.edu	37	chr2	124783203	124783203	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcgaatttgggattcgattGggagggaccgctcactcggg	16	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	124783203	124783203	G	A	SNP	CNTNAP5	ENST00000423939	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.316	-	-	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	66	0	0	39	7	15.22	-	-	-	A	124783203	G	A	124783203	1	1	281	0	1	0	0	0	0	0	0	0	3680	1363	47	4		4	CNTNAP5	2	124783203	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8183311	124783203	118416170	173	31437										
SAP130	0	genome.wustl.edu	37	chr2	128767866	128767866	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtgctgaatcagtagcatgCgccgctgtcgtagtgatgac	13	9	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	128767866	128767866	C	A	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	silent	c.924	p.A308	0.987	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	77	0	0	71	34	32.38	-	-	-	A	128767866	C	A	128767866	2	1	281	1	0	0	0	0	0	0	0	1	13917	755	27	3		3	SAP130	2	128767866	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3984663	128767866	114431507	174	31438										
GPR148	0	genome.wustl.edu	37	chr2	131486765	131486766	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgccctgtgggcactacagcINSttggccggccctgatccagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	131486765	131486766	-	T	INS	GPR148	ENST00000309926	human	ensembl	69_37n	1	known	frame_shift_ins	c.41_42	p.W15fs	0.007:0.010	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR148	HGNC	ENSG00000173302	99	0	0	50	26	34.21	-	-	-	T	131486766	-	T	131486765	7	5	281	1	0	1	1	0	0	0	0	0	6703	797	28	0	43	0	GPR148	2	131486765	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2718899	131486765	111712608	175	31439										
NCKAP5	0	genome.wustl.edu	37	chr2	133540668	133540668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccatcccttccatcactcCcagggatgctactttccaat	4	18	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	133540668	133540668	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.3716	p.G1239V	0.711	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	142	0	0	93	68	42.24	-	-	-	A	133540668	C	A	133540668	3	1	281	1	0	0	0	0	1	0	0	0	10295	623	22	4	2041	4	NCKAP5	2	133540668	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2053903	133540668	109658705	176	31440										
MGAT5	0	genome.wustl.edu	37	chr2	135011964	135011964	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccaaggacaggtgaagttGccagagagcaatggctctct	13	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	135011964	135011964	G	A	SNP	MGAT5	ENST00000488365	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MGAT5	HGNC	ENSG00000152127	117	0	0	93	16	14.68	-	-	-	A	135011964	G	A	135011964	1	1	281	0	1	0	0	0	0	0	0	0	9619	1334	46	4		4	MGAT5	2	135011964	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1471296	135011964	108187409	177	31441										
R3HDM1	0	genome.wustl.edu	37	chr2	136389293	136389293	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catactttgtttcagggacaGaatgatgctgctgaaattgg	11	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	136389293	136389293	G	T	SNP	R3HDM1	ENST00000456040	human	ensembl	69_37n	1	novel	nonsense	c.451	p.E151*	1.000	smart_R3H_ss-bd,pfscan_R3H_ss-bd	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	R3HDM1	HGNC	ENSG00000048991	101	0	0	75	34	31.19	-	-	-	T	136389293	G	T	136389293	4	4	281	1	0	0	0	0	0	1	0	0	12970	942	33	2	525	2	R3HDM1	2	136389293	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1377329	136389293	106810080	178	31442										
EPC2	0	genome.wustl.edu	37	chr2	149520238	149520238	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatttttgttaccttttcaaGataccatttgggagactatg	7	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	149520238	149520238	G	T	SNP	EPC2	ENST00000258484	human	ensembl	69_37n	1	known	splice_site	c.816-1	e6-1	1.000	-	-	-	no_errors	EPC2	HGNC	ENSG00000135999	51	0	0	46	13	22.03	-	-	-	T	149520238	G	T	149520238	5	4	281	1	0	0	0	0	0	0	1	0	5198	956	33	2	837	2	EPC2	2	149520238	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	13130945	149520238	93679135	179	31443										
CACNB4	0	genome.wustl.edu	37	chr2	152830225	152830225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcaggtacaaattgtcataCatggaggtgtgataatccag	11	6	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	152830225	152830225	C	T	SNP	CACNB4	ENST00000360283	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	prints_VDCC_L_b3su	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su,pfscan_SH3_domain	-	no_errors	CACNB4	HGNC	ENSG00000182389	68	0	0	47	20	29.85	-	-	-	T	152830225	C	T	152830225	3	4	281	1	0	0	0	0	1	0	0	0	2580	478	17	4	1509	4	CACNB4	2	152830225	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3309987	152830225	90369148	180	31444										
MARCH7	0	genome.wustl.edu	37	chr2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcttctagcatgtcatctacTtttttttcacgaagatctag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	160604680	160604680	T	-	DEL	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	frame_shift_del	c.879	p.S296fs	0.910	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	104	0	0	82	24	22.64	-	-	-	-	160604680	T	-	160604680	7	5	281	1	0	1	0	1	0	0	0	0	9377	1596	56	0	893	0	MARCH7	2	160604680	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	7774455	160604680	82594693	181	31445										
TBR1	0	genome.wustl.edu	37	chr2	162273179	162273180	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagtaaactctctcctgtcINSttggacggggtctctgagct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	162273179	162273180	-	T	INS	TBR1	ENST00000389554	human	ensembl	69_37n	1	known	frame_shift_ins	c.258_259	p.L86fs	1.000:1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535	161	0	0	81	25	23.58	-	-	-	T	162273180	-	T	162273179	7	5	281	1	0	1	1	0	0	0	0	0	15742	900	32	0	260	0	TBR1	2	162273179	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1668499	162273179	80926194	182	31446										
COBLL1	0	genome.wustl.edu	37	chr2	165548780	165548781	+	Frame_Shift_Del	DEL	CT	CT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacggattgcagtcagcaaaCtctgtcgcatctgttctggg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	165548780	165548781	CT	-	DEL	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	frame_shift_del	c.3566_3565	p.S1189fs	1.000:1.000	pfscan_WH2_dom	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	70	0	0	64	12	15.79	-	-	-	-	165548781	CT	-	165548780	7	5	281	1	0	1	0	1	0	0	0	0	3684	565	20	0	143	0	COBLL1	2	165548780	Frame_Shift_Del	DEL	CT	TCGA-AN-A0AK-01A-21W-A019-09	3275601	165548780	77650593	183	31447										
SCN3A	0	genome.wustl.edu	37	chr2	166011045	166011045	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctgcttcttccaaggtggCctgattctgctcctcatagg	9	12	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	166011045	166011045	C	G	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.1297	p.A433P	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	156	0	0	156	44	22	-	-	-	G	166011045	C	G	166011045	3	3	281	1	0	0	0	0	1	0	0	0	14006	739	26	4	4777	4	SCN3A	2	166011045	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	462265	166011045	77188328	184	31448										
SCN7A	0	genome.wustl.edu	37	chr2	167273463	167273464	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaacacattcaaagtgggtINSaaggttgttttgatcaaagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	167273463	167273464	-	A	INS	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3168_3167	p.L1056fs	0.979:0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	36	0	0	41	8	16.33	-	-	-	A	167273464	-	A	167273463	7	5	281	1	0	1	1	0	0	0	0	0	14011	1635	57	0	1904	0	SCN7A	2	167273463	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1262418	167273463	75925910	185	31449										
XIRP2	0	genome.wustl.edu	37	chr2	167760086	167760086	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtgtcatcccagggacagcCattgtacaattttccagcct	8	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	167760086	167760086	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.94	p.H32N	0.016	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	95	0	0	95	17	15.18	-	-	-	A	167760086	C	A	167760086	3	1	281	1	0	0	0	0	1	0	0	0	17527	594	21	4	96	4	XIRP2	2	167760086	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	486623	167760086	75439287	186	31450										
XIRP2	0	genome.wustl.edu	37	chr2	168103264	168103264	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggtggtgatgttgaaggtAcaaaactgttactgaagaaa	12	3	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	168103264	168103264	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.5362	p.T1788A	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	460	0	0	525	94	15.16	-	-	-	G	168103264	A	G	168103264	3	3	281	1	0	0	0	0	1	0	0	0	17527	391	14	5	5392	5	XIRP2	2	168103264	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	343178	168103264	75096109	187	31451										
XIRP2	0	genome.wustl.edu	37	chr2	168107830	168107830	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcgcctgtcagagcacacaCagagatatgaagcggccaac	10	13	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	168107830	168107830	C	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9928	p.Q3310E	0.006	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	313	0	0	216	107	33.02	-	-	-	G	168107830	C	G	168107830	3	3	281	1	0	0	0	0	1	0	0	0	17527	479	17	4	9958	4	XIRP2	2	168107830	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4566	168107830	75091543	188	31452										
XIRP2	0	genome.wustl.edu	37	chr2	168110571	168110571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctccaagacaaggaaatatgTatactttgtcaaaagacagt	7	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	168110571	168110571	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.10585	p.Y3529H	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	137	0	0	115	21	15.44	-	-	-	C	168110571	T	C	168110571	3	2	281	1	0	0	0	0	1	0	0	0	17527	1647	57	5	10619	5	XIRP2	2	168110571	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2741	168110571	75088802	189	31453										
ABCB11	0	genome.wustl.edu	37	chr2	169825987	169825987	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgcagtgccatgttcaaaAccaatgatggtatctgcagc	9	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	169825987	169825987	A	G	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	silent	c.1884	p.G628	0.985	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	53	0	0	35	11	23.91	-	-	-	G	169825987	A	G	169825987	2	3	281	1	0	0	0	0	0	0	0	1	42	30	2	5		5	ABCB11	2	169825987	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1715416	169825987	73373386	190	31454										
ZAK	0	genome.wustl.edu	37	chr2	174085999	174085999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtaacggggagggccatgGcatgaacccaagtctgcagg	15	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	174085999	174085999	G	A	SNP	ZAK	ENST00000338983	human	ensembl	69_37n	1	known	missense	c.1109	p.G370D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	101	0	0	105	16	13.11	-	-	-	A	174085999	G	A	174085999	3	1	281	1	0	0	0	0	1	0	0	0	17609	1203	42	4	1151	4	ZAK	2	174085999	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4260012	174085999	69113374	191	31455										
SCRN3	0	genome.wustl.edu	37	chr2	175287696	175287696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agggagaattcctgaccactGcaagcatggtttctatttta	9	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	175287696	175287696	G	A	SNP	SCRN3	ENST00000272732	human	ensembl	69_37n	1	known	missense	c.838	p.A280T	1.000	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	107	0	0	108	27	20	-	-	-	A	175287696	G	A	175287696	3	1	281	1	0	0	0	0	1	0	0	0	14028	1319	46	4	856	4	SCRN3	2	175287696	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1201697	175287696	67911677	192	31456										
SCRN3	0	genome.wustl.edu	37	chr2	175292623	175292623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagtcaaagttagttcttaGtgatcatatggtcagctaat	8	6	5	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	175292623	175292623	G	A	SNP	SCRN3	ENST00000272732	human	ensembl	69_37n	1	known	silent	c.1275	p.*425	0.002	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	76	0	0	47	24	33.8	-	-	-	A	175292623	G	A	175292623	2	1	281	1	0	0	0	0	0	0	0	1	14028	1024	36	4		4	SCRN3	2	175292623	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4927	175292623	67906750	193	31457										
GPR155	0	genome.wustl.edu	37	chr2	175330598	175330599	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatttttttctttaacaaaaINSttccatatcatcattccagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	175330598	175330599	-	T	INS	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1299_1298	p.N433fs	1.000:1.000	NULL	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328	77	0	0	37	20	35.09	-	-	-	T	175330599	-	T	175330598	7	5	281	1	0	1	1	0	0	0	0	0	6710	98	4	0	1353	0	GPR155	2	175330598	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	37975	175330598	67868775	194	31458										
NFE2L2	0	genome.wustl.edu	37	chr2	178095531	178095531	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atctagtttttcttaacatcTggcttcttacttttgggaac	6	8	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	178095531	178095531	T	C	SNP	NFE2L2	ENST00000397062	human	ensembl	69_37n	-1	known	silent	c.1800	p.P600	0.999	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,superfamily_Sepin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	211	1	0.47	161	44	21.46	-	-	-	C	178095531	T	C	178095531	2	2	281	1	0	0	0	0	0	0	0	1	10440	1567	55	5		5	NFE2L2	2	178095531	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2764933	178095531	65103842	195	31459										
PDE11A	0	genome.wustl.edu	37	chr2	178936814	178936814	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcttccttagctctttctgAgaagctctccgctgcaggtt	8	13	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	178936814	178936814	A	G	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	silent	c.351	p.S117	0.990	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	74	0	0	81	10	10.99	-	-	-	G	178936814	A	G	178936814	2	3	281	1	0	0	0	0	0	0	0	1	11704	291	11	5		5	PDE11A	2	178936814	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	841283	178936814	64262559	196	31460										
TTN	0	genome.wustl.edu	37	chr2	179415916	179415916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatcttactgcctccatcacGcaatggtgggttccatttaa	7	11	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	179415916	179415916	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.83638	p.R27880C	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	53	0	0	43	11	20.37	-	-	-	A	179415916	G	A	179415916	3	1	281	1	0	0	0	0	1	0	0	0	16832	1087	38	1	16745	1	TTN	2	179415916	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	479102	179415916	63783457	197	31461										
TTN	0	genome.wustl.edu	37	chr2	179468880	179468880	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actagcattgatcctttggtGcgtgccaaaacttttggttt	9	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	179468880	179468880	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.46830	p.R15610	0.980	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	210	0	0	183	35	16.06	-	-	-	A	179468880	G	A	179468880	2	1	281	1	0	0	0	0	0	0	0	1	16832	1306	46	4		4	TTN	2	179468880	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	52964	179468880	63730493	198	31462										
TTN	0	genome.wustl.edu	37	chr2	179597327	179597327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaccagaaaccagctctttGttgcccttaaaccatctgat	5	14	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	179597327	179597327	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.12729	p.N4243	0.996	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	72	0	0	74	21	22.11	-	-	-	A	179597327	G	A	179597327	2	1	281	1	0	0	0	0	0	0	0	1	16832	1368	48	4		4	TTN	2	179597327	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	128447	179597327	63602046	199	31463										
TTN	0	genome.wustl.edu	37	chr2	179621104	179621104	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagtctctcggattcctctAtctttgcaccttcgtgagtc	7	13	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	179621104	179621104	A	G	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.10586	p.I3529T	0.005	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	115	0	0	118	36	23.38	-	-	-	G	179621104	A	G	179621104	3	3	281	1	0	0	0	0	1	0	0	0	16832	449	16	5	100157	5	TTN	2	179621104	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	23777	179621104	63578269	200	31464										
GLS	0	genome.wustl.edu	37	chr2	191795242	191795244	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatgggtatgatgtgctggtCtcctcctctggataagatgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	191795242	191795244	CTC	-	DEL	GLS	ENST00000320717	human	ensembl	69_37n	1	known	in_frame_del	c.1505_1507	p.P504in_frame_del	1.000:0.864:1.000	pfam_Glutaminase,superfamily_Beta-lactam/transpept-like,tigrfam_Glutaminase	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419	72	0	0	59	10	14.49	-	-	-	-	191795244	CTC	-	191795242	7	5	281	1	0	1	0	1	0	0	0	0	6515	913	32	0	1555	0	GLS	2	191795242	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	12174138	191795242	51404131	201	31465										
DNAH7	0	genome.wustl.edu	37	chr2	196681536	196681536	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtggtgtcaatctttttctCtgtctcttcggctacttcct	8	11	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	196681536	196681536	C	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.9577	p.E3193Q	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	185	0	0	186	29	13.49	-	-	-	G	196681536	C	G	196681536	3	3	281	1	0	0	0	0	1	0	0	0	4641	922	32	2	2557	2	DNAH7	2	196681536	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4886294	196681536	46517837	202	31466										
CCDC150	0	genome.wustl.edu	37	chr2	197597463	197597463	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatcagtacaaaactaccccTttttttgtcccttttcacat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	197597463	197597463	T	-	DEL	CCDC150	ENST00000483877	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395	72	0	0	73	11	13.1	-	-	-	-	197597463	T	-	197597463	6	5	281	0	1	1	0	1	0	0	0	0	2810	1624	56	0		0	CCDC150	2	197597463	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	915927	197597463	45601910	203	31467										
PGAP1	0	genome.wustl.edu	37	chr2	197738284	197738284	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcacttgcttaccacgttgAttttaaaagcttggtatatc	7	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	197738284	197738284	A	T	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.1520	p.I507N	1.000	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	54	0	0	60	13	17.81	-	-	-	T	197738284	A	T	197738284	3	4	281	1	0	0	0	0	1	0	0	0	11851	333	12	5	1296	5	PGAP1	2	197738284	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	140821	197738284	45461089	204	31468										
CASP8	0	genome.wustl.edu	37	chr2	202137400	202137400	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagagatggagaagagggtcAtcctgggagaaggaaagttg	17	3	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	202137400	202137400	A	G	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.628	p.I210V	0.001	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	398	0	0	277	163	36.96	-	-	-	G	202137400	A	G	202137400	3	3	281	1	0	0	0	0	1	0	0	0	2702	217	8	5	742	5	CASP8	2	202137400	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4399116	202137400	41061973	205	31469										
CD28	0	genome.wustl.edu	37	chr2	204599627	204599627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacgcgacttcgcagcctatCgctcctgacacggacgccta	9	17	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	204599627	204599627	C	T	SNP	CD28	ENST00000324106	human	ensembl	69_37n	1	known	missense	c.655	p.R219C	1.000	prints_CD28	pfam_Ig_V-set,smart_Ig_V-set_subgr,prints_CD28	-	no_errors	CD28	HGNC	ENSG00000178562	114	0	0	118	24	16.9	-	-	-	T	204599627	C	T	204599627	3	4	281	1	0	0	0	0	1	0	0	0	3022	884	31	1	669	1	CD28	2	204599627	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2462227	204599627	38599746	206	31470										
ICOS	0	genome.wustl.edu	37	chr2	204820526	204820526	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaggaagtggaaacacagtgTccattaagagtctgaaattc	10	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	204820526	204820526	T	C	SNP	ICOS	ENST00000316386	human	ensembl	69_37n	1	known	missense	c.226	p.S76P	0.005	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600	225	0	0	133	92	40.89	-	-	-	C	204820526	T	C	204820526	3	2	281	1	0	0	0	0	1	0	0	0	7540	1667	58	5	232	5	ICOS	2	204820526	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	220899	204820526	38378847	207	31471										
INO80D	0	genome.wustl.edu	37	chr2	206921318	206921318	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggactaaagtgctcttgtcGaacttttaaaatctctgtct	8	8	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	206921318	206921318	G	A	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	nonsense	c.568	p.R190*	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	51	0	0	26	27	50.94	-	-	-	A	206921318	G	A	206921318	4	1	281	1	0	0	0	0	0	1	0	0	7803	1066	37	1	2547	1	INO80D	2	206921318	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2100792	206921318	36278055	208	31472										
PTH2R	0	genome.wustl.edu	37	chr2	209308166	209308166	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgtcaaagacagagtagtCcatgctcacataggagtaaa	9	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	209308166	209308166	C	T	SNP	PTH2R	ENST00000272847	human	ensembl	69_37n	1	known	silent	c.603	p.V201	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407	170	0	0	152	39	20.42	-	-	-	T	209308166	C	T	209308166	2	4	281	1	0	0	0	0	0	0	0	1	12841	842	30	2		2	PTH2R	2	209308166	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2386848	209308166	33891207	209	31473										
ERBB4	0	genome.wustl.edu	37	chr2	212615430	212615430	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggacttatggcaacgtccacCtgcagaacacgaaaagggaa	11	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	212615430	212615430	C	A	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	splice_site	c.557-1	e5-1	1.000	-	-	-	no_errors	ERBB4	HGNC	ENSG00000178568	102	1	0.97	58	13	18.31	-	-	-	A	212615430	C	A	212615430	5	1	281	1	0	0	0	0	0	0	1	0	5246	695	24	4	3466	4	ERBB4	2	212615430	Splice_Site	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3307264	212615430	30583943	210	31474										
ABCA12	0	genome.wustl.edu	37	chr2	215851424	215851424	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatctttaggttcaggctcGatgttagaggaaaacatgta	11	5	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	215851424	215851424	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	silent	c.4005	p.I1335	0.994	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	116	0	0	113	18	13.64	-	-	-	A	215851424	G	A	215851424	2	1	281	1	0	0	0	0	0	0	0	1	30	1048	37	1		1	ABCA12	2	215851424	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3235994	215851424	27347949	211	31475										
IGFBP5	0	genome.wustl.edu	37	chr2	217542937	217542937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctgcagggaagcctccatGtgtctgcggcaggggccctg	15	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	217542937	217542937	G	A	SNP	IGFBP5	ENST00000233813	human	ensembl	69_37n	-1	known	silent	c.585	p.H195	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-5	-	no_errors	IGFBP5	HGNC	ENSG00000115461	52	0	0	28	13	31.71	-	-	-	A	217542937	G	A	217542937	2	1	281	1	0	0	0	0	0	0	0	1	7636	1368	48	4		4	IGFBP5	2	217542937	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1691513	217542937	25656436	212	31476										
PNKD	0	genome.wustl.edu	37	chr2	219209287	219209287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggcagcggctggagcgcaaGggcacggtgagggactcggg	21	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	219209287	219209287	G	A	SNP	PNKD	ENST00000273077	human	ensembl	69_37n	1	known	silent	c.978	p.K326	1.000	tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_errors	PNKD	HGNC	ENSG00000127838	20	0	0	6	5	45.45	-	-	-	A	219209287	G	A	219209287	2	1	281	1	0	0	0	0	0	0	0	1	12220	991	35	4		4	PNKD	2	219209287	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1666350	219209287	23990086	213	31477										
USP37	0	genome.wustl.edu	37	chr2	219423359	219423359	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgaattctgataggaccatgTatcttcagaggagacatatt	9	7	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	219423359	219423359	T	C	SNP	USP37	ENST00000258399	human	ensembl	69_37n	-1	known	missense	c.18	p.I6M	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP37	HGNC	ENSG00000135913	214	0	0	207	99	32.35	-	-	-	C	219423359	T	C	219423359	3	2	281	1	0	0	0	0	1	0	0	0	17165	1628	57	5	3013	5	USP37	2	219423359	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	214072	219423359	23776014	214	31478										
TTLL4	0	genome.wustl.edu	37	chr2	219616427	219616427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctttctggcctctgccgtagCctgcccacctcccctgggga	10	18	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	219616427	219616427	C	A	SNP	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	missense	c.2874	p.S958R	0.312	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	125	0	0	96	13	11.93	-	-	-	A	219616427	C	A	219616427	3	1	281	1	0	0	0	0	1	0	0	0	16826	753	26	4	2928	4	TTLL4	2	219616427	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	193068	219616427	23582946	215	31479										
CCDC108	0	genome.wustl.edu	37	chr2	219883883	219883883	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccttaaaggggtgaggacGggggggatctggctcatgct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	219883883	219883883	G	-	DEL	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	frame_shift_del	c.3492	p.V1165fs	0.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	62	0	0	34	12	23.53	-	-	-	-	219883883	G	-	219883883	7	5	281	1	0	1	0	1	0	0	0	0	2768	1103	39	0	2345	0	CCDC108	2	219883883	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	267456	219883883	23315490	216	31480										
OBSL1	0	genome.wustl.edu	37	chr2	220421323	220421323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggccctggagtgacgacggCcccattgcgcagccaggtga	16	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	220421323	220421323	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.4189	p.A1397T	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	108	0	0	43	8	15.69	-	-	-	T	220421323	C	T	220421323	3	4	281	1	0	0	0	0	1	0	0	0	10886	739	26	4	1560	4	OBSL1	2	220421323	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	537440	220421323	22778050	217	31481										
PAX3	0	genome.wustl.edu	37	chr2	223158894	223158894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccaccgcttacctcgctcgCtcaggatgccgtcgatgctg	11	16	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	223158894	223158894	C	T	SNP	PAX3	ENST00000392069	human	ensembl	69_37n	-1	known	missense	c.578	p.S193N	1.000	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903	143	0	0	89	23	20.54	-	-	-	T	223158894	C	T	223158894	3	4	281	1	0	0	0	0	1	0	0	0	11553	797	28	4	1096	4	PAX3	2	223158894	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2737571	223158894	20040479	218	31482										
PAX3	0	genome.wustl.edu	37	chr2	223160256	223160256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggcctagtacctgacggcaCggtgtttcgatcacagaccg	13	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	223160256	223160256	C	T	SNP	PAX3	ENST00000392069	human	ensembl	69_37n	-1	known	missense	c.442	p.V148M	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax7,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903	37	0	0	18	6	25	-	-	-	T	223160256	C	T	223160256	3	4	281	1	0	0	0	0	1	0	0	0	11553	536	19	1	1236	1	PAX3	2	223160256	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1362	223160256	20039117	219	31483										
ACSL3	0	genome.wustl.edu	37	chr2	223773533	223773533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaccatctaccatgaagctaAaacataccatcaaccctatt	2	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	223773533	223773533	A	G	SNP	ACSL3	ENST00000357430	human	ensembl	69_37n	1	known	missense	c.43	p.K15E	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983	204	0	0	160	98	37.98	-	-	-	G	223773533	A	G	223773533	3	3	281	1	0	0	0	0	1	0	0	0	178	15	1	5	45	5	ACSL3	2	223773533	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	613277	223773533	19425840	220	31484										
COL4A3	0	genome.wustl.edu	37	chr2	228119378	228119378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctaattaatacagggactgCctggagaatcatatggatct	9	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	228119378	228119378	C	G	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	missense	c.835	p.P279A	0.984	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	141	0	0	173	33	15.94	-	-	-	G	228119378	C	G	228119378	3	3	281	1	0	0	0	0	1	0	0	0	3721	739	26	4	893	4	COL4A3	2	228119378	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4345845	228119378	15079995	221	31485										
COL4A3	0	genome.wustl.edu	37	chr2	228128655	228128655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcaccgggacctccaggacCgccaggtaaagatgtggaag	13	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	228128655	228128655	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	missense	c.1310	p.P437L	0.994	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	58	0	0	31	25	44.64	-	-	-	T	228128655	C	T	228128655	3	4	281	1	0	0	0	0	1	0	0	0	3721	652	23	1	1392	1	COL4A3	2	228128655	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	9277	228128655	15070718	222	31486										
ARMC9	0	genome.wustl.edu	37	chr2	232079546	232079546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgatgtcttctccacagaaGgatcttgtcgctgcatttga	9	10	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	232079546	232079546	G	T	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	1	known	missense	c.180	p.K60N	1.000	NULL	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	64	0	0	68	16	19.05	-	-	-	T	232079546	G	T	232079546	3	4	281	1	0	0	0	0	1	0	0	0	962	991	35	4	190	4	ARMC9	2	232079546	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3950891	232079546	11119827	223	31487										
COL6A3	0	genome.wustl.edu	37	chr2	238274657	238274657	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctagaaccatcaaaccccAgaatcacatccagattacaa	3	14	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	238274657	238274657	A	G	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.5522	p.L1841P	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	104	0	0	117	18	13.33	-	-	-	G	238274657	A	G	238274657	3	3	281	1	0	0	0	0	1	0	0	0	3731	188	7	5	4143	5	COL6A3	2	238274657	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6195111	238274657	4924716	224	31488										
HDAC4	0	genome.wustl.edu	37	chr2	240066299	240066299	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtgacatccaacggacgcTtttttagagcagtgaccact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	240066299	240066299	T	-	DEL	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	frame_shift_del	c.845	p.K282fs	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	74	0	0	24	6	18.75	-	-	-	-	240066299	T	-	240066299	7	5	281	1	0	1	0	1	0	0	0	0	7060	1609	56	0	2489	0	HDAC4	2	240066299	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1791642	240066299	3133074	225	31489										
SNED1	0	genome.wustl.edu	37	chr2	241989376	241989376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgggcaggggcgtccgggcCggcgtcagcaccctggagag	20	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	2	241989376	241989376	C	T	SNP	SNED1	ENST00000431690	human	ensembl	69_37n	1	novel	missense	c.734	p.P245L	0.000	NULL	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon	SNED1	HGNC	ENSG00000162804	18	0	0	8	9	52.94	-	-	-	T	241989376	C	T	241989376	3	4	281	1	0	0	0	0	1	0	0	0	14934	667	23	1		1	SNED1	2	241989376	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1923077	241989376	1209997	226	31490										
CNTN6	0	genome.wustl.edu	37	chr3	1337403	1337403	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaagtggaaccatcagatgtGggcaactacacttgctttat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	1337403	1337403	G	-	DEL	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	frame_shift_del	c.573	p.G192fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	101	0	0	97	27	21.6	-	-	-	-	1337403	G	-	1337403	7	5	281	1	0	1	0	1	0	0	0	0	3675	1335	47	0	591	0	CNTN6	3	1337403	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09		1337403	196685027	227	31491										
LRRN1	0	genome.wustl.edu	37	chr3	3888334	3888334	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcattaaaaaagtatatgcAaaaaacctcttcaatcccac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	3888334	3888334	A	-	DEL	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	frame_shift_del	c.2009	p.T672fs	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	136	0	0	81	41	33.61	-	-	-	-	3888334	A	-	3888334	7	5	281	1	0	1	0	1	0	0	0	0	9100	130	5	0	2011	0	LRRN1	3	3888334	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2550931	3888334	194134096	228	31492										
SETMAR	0	genome.wustl.edu	37	chr3	4354769	4354769	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggaaagtatgcagagcctgTttttgaatgcaatgtcctgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	4354769	4354769	T	-	DEL	SETMAR	ENST00000358065	human	ensembl	69_37n	1	known	frame_shift_del	c.344	p.F116fs	0.952	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_Transposase_1,pfam_SET_dom,pfam_Pre-SET_dom,pfam_Transposase_Tc1-like,pfam_Transposase_14,superfamily_Homeodomain-like,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETMAR	HGNC	ENSG00000170364	103	0	0	57	9	13.24	-	-	-	-	4354769	T	-	4354769	7	5	281	1	0	1	0	1	0	0	0	0	14228	1725	60	0	350	0	SETMAR	3	4354769	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	466435	4354769	193667661	229	31493										
ITPR1	0	genome.wustl.edu	37	chr3	4716875	4716875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgacaacaatcttccccattAgcaagatggcgaaaggagaa	9	9	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	4716875	4716875	A	G	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.2677	p.S893G	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	104	0	0	107	23	17.69	-	-	-	G	4716875	A	G	4716875	3	3	281	1	0	0	0	0	1	0	0	0	7974	420	15	5	2804	5	ITPR1	3	4716875	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	362106	4716875	193305555	230	31494										
SRGAP3	0	genome.wustl.edu	37	chr3	9055516	9055516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggtgcaccctctcggctggGttctccagttctgtaacata	10	12	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	9055516	9055516	G	A	SNP	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	silent	c.1824	p.N608	0.985	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	153	0	0	121	14	10.37	-	-	-	A	9055516	G	A	9055516	2	1	281	1	0	0	0	0	0	0	0	1	15238	1252	44	4		4	SRGAP3	3	9055516	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4338641	9055516	188966914	231	31495										
ATG7	0	genome.wustl.edu	37	chr3	11350233	11350233	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagatctgctgagaggaggcGcctgggttccctcacttggc	15	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	11350233	11350233	G	A	SNP	ATG7	ENST00000464282	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG7	HGNC	ENSG00000197548	50	0	0	44	10	18.52	-	-	-	A	11350233	G	A	11350233	1	1	281	0	1	0	0	0	0	0	0	0	1105	1102	38	1		1	ATG7	3	11350233	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2294717	11350233	186672197	232	31496										
CAND2	0	genome.wustl.edu	37	chr3	12858022	12858022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacctgtgatggcctgtgtgGctgactctttctacaagatt	10	10	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	12858022	12858022	G	A	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	missense	c.1591	p.A531T	0.996	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	54	0	0	28	10	26.32	-	-	-	A	12858022	G	A	12858022	3	1	281	1	0	0	0	0	1	0	0	0	2641	1203	42	4	1629	4	CAND2	3	12858022	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1507789	12858022	185164408	233	31497										
XPC	0	genome.wustl.edu	37	chr3	14200022	14200022	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggaatcctcatcagagggaTcagaggcttctccactggag	12	11	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	14200022	14200022	T	G	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	missense	c.1361	p.D454A	0.000	tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	179	0	0	160	32	16.67	-	-	-	G	14200022	T	G	14200022	3	3	281	1	0	0	0	0	1	0	0	0	17538	1435	50	5		5	XPC	3	14200022	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1342000	14200022	183822408	234	31498										
TBC1D5	0	genome.wustl.edu	37	chr3	17469985	17469987	+	In_Frame_Del	DEL	TTC	TTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agagtctaaagtagaacttgTtcttcttccatttttatttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	17469985	17469987	TTC	-	DEL	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	in_frame_del	c.124_122	p.R41in_frame_del	0.987:1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	49	0	0	31	9	22.5	-	-	-	-	17469987	TTC	-	17469985	7	5	281	1	0	1	0	1	0	0	0	0	15718	1725	60	0	2409	0	TBC1D5	3	17469985	In_Frame_Del	DEL	TTC	TCGA-AN-A0AK-01A-21W-A019-09	3269963	17469985	180552445	235	31499										
TBC1D5	0	genome.wustl.edu	37	chr3	17469996	17469996	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagaacttgttcttcttccaTttttatttgaatctcctgga	5	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	17469996	17469996	T	C	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	missense	c.113	p.N38S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	55	0	0	25	15	37.5	-	-	-	C	17469996	T	C	17469996	3	2	281	1	0	0	0	0	1	0	0	0	15718	1493	52	5	2420	5	TBC1D5	3	17469996	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	11	17469996	180552434	236	31500										
KCNH8	0	genome.wustl.edu	37	chr3	19322816	19322818	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gattactccagaagataaaaAagaaggtttgtaccgttttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	19322816	19322818	AAG	-	DEL	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	in_frame_del	c.437_439	p.E147in_frame_del	1.000:1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	143	0	0	158	26	14.13	-	-	-	-	19322818	AAG	-	19322816	7	5	281	1	0	1	0	1	0	0	0	0	8092	14	1	0	447	0	KCNH8	3	19322816	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	1852820	19322816	178699614	237	31501										
SGOL1	0	genome.wustl.edu	37	chr3	20225112	20225112	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaaatacctgagcaggttcTactgtttgttgtgatgtaag	11	5	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	20225112	20225112	T	C	SNP	SGOL1	ENST00000263753	human	ensembl	69_37n	-1	known	silent	c.327	p.V109	0.802	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810	244	0	0	212	48	18.46	-	-	-	C	20225112	T	C	20225112	2	2	281	1	0	0	0	0	0	0	0	1	14304	1509	53	5		5	SGOL1	3	20225112	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	902296	20225112	177797318	238	31502										
RBMS3	0	genome.wustl.edu	37	chr3	29910435	29910435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatatacccagaatgggaggCcttggcccagggaaggagag	15	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	29910435	29910435	C	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.724	p.P242S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	39	0	0	18	5	21.74	-	-	-	T	29910435	C	T	29910435	3	4	281	1	0	0	0	0	1	0	0	0	13233	739	26	4	750	4	RBMS3	3	29910435	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	9685323	29910435	168111995	239	31503										
SUSD5	0	genome.wustl.edu	37	chr3	33194344	33194345	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgcggtagccccacaccatINSccccacacctgccaggagca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	33194344	33194345	-	C	INS	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1780_1779	p.M593fs	0.128:0.087	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	80	0	0	40	21	34.43	-	-	-	C	33194345	-	C	33194344	7	5	281	1	0	1	1	0	0	0	0	0	15502	1435	50	0	113	0	SUSD5	3	33194344	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	3283909	33194344	164828086	240	31504										
MLH1	0	genome.wustl.edu	37	chr3	37067127	37067127	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttttttttttttaatacaGactttgctaccaggacttgc	5	7	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	37067127	37067127	G	C	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	splice_site	c.1039-1	e12-1	1.000	-	-	-	no_errors	MLH1	HGNC	ENSG00000076242	68	0	0	26	21	44.68	-	-	-	C	37067127	G	C	37067127	5	2	281	1	0	0	0	0	0	0	1	0	9688	956	33	2	1084	2	MLH1	3	37067127	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3872783	37067127	160955303	241	31505										
DLEC1	0	genome.wustl.edu	37	chr3	38141824	38141824	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtggccagcttcactctctGggggagtgcagggtggacat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	38141824	38141824	G	-	DEL	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	frame_shift_del	c.2772	p.E926fs	1.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	145	0	0	66	11	14.1	-	-	-	-	38141824	G	-	38141824	7	5	281	1	0	1	0	1	0	0	0	0	4588	1335	47	0	2846	0	DLEC1	3	38141824	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1074697	38141824	159880606	242	31506										
SCN10A	0	genome.wustl.edu	37	chr3	38748822	38748822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggagcccaacttcttcatgGcattgtagtatttcttctgc	8	10	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	38748822	38748822	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.4334	p.A1445V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	95	0	0	23	28	53.85	-	-	-	A	38748822	G	A	38748822	3	1	281	1	0	0	0	0	1	0	0	0	14000	1203	42	4	1548	4	SCN10A	3	38748822	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	606998	38748822	159273608	243	31507										
ULK4	0	genome.wustl.edu	37	chr3	41705172	41705172	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctggtactgggtcaggttcTaaaagaatgtgctcatacct	11	8	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	41705172	41705172	T	C	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	silent	c.2997	p.L999	0.052	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	189	0	0	76	11	12.64	-	-	-	C	41705172	T	C	41705172	2	2	281	1	0	0	0	0	0	0	0	1	17075	1519	53	5		5	ULK4	3	41705172	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2956350	41705172	156317258	244	31508										
ANO10	0	genome.wustl.edu	37	chr3	43618203	43618203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccatgaagttaaaaactcGgcagcatatcgatagagacg	9	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	43618203	43618203	G	A	SNP	ANO10	ENST00000292246	human	ensembl	69_37n	-1	known	silent	c.1143	p.A381	0.001	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	104	0	0	57	7	10.94	-	-	-	A	43618203	G	A	43618203	2	1	281	1	0	0	0	0	0	0	0	1	695	1103	39	1		1	ANO10	3	43618203	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1913031	43618203	154404227	245	31509										
FYCO1	0	genome.wustl.edu	37	chr3	45972655	45972655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggagaagacccagctgatggTgaggcctgcctcggccacag	15	12	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	45972655	45972655	T	C	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.4219	p.T1407A	1.000	superfamily_GOLD,pfscan_GOLD	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	67	0	0	27	4	12.9	-	-	-	C	45972655	T	C	45972655	3	2	281	1	0	0	0	0	1	0	0	0	6174	1696	59	5	289	5	FYCO1	3	45972655	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2354452	45972655	152049775	246	31510										
KIF9	0	genome.wustl.edu	37	chr3	47284577	47284577	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctccttcggggagtctgagGgaaggggctcaatgctggaa	16	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	47284577	47284577	G	T	SNP	KIF9	ENST00000265529	human	ensembl	69_37n	-1	known	missense	c.1673	p.P558H	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727	70	0	0	50	6	10.71	-	-	-	T	47284577	G	T	47284577	3	4	281	1	0	0	0	0	1	0	0	0	8362	1232	43	4	723	4	KIF9	3	47284577	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1311922	47284577	150737853	247	31511										
PTPN23	0	genome.wustl.edu	37	chr3	47450544	47450544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgggccgcttgaccaggtcCgggctgccctgcccacaccg	14	18	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	47450544	47450544	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.1609	p.R537W	0.998	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	72	0	0	12	7	36.84	-	-	-	T	47450544	C	T	47450544	3	4	281	1	0	0	0	0	1	0	0	0	12871	643	23	1	1671	1	PTPN23	3	47450544	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	165967	47450544	150571886	248	31512										
ALAS1	0	genome.wustl.edu	37	chr3	52248109	52248109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagctgagtgcaacttctgCaggaggccactgcattttga	11	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	52248109	52248109	C	T	SNP	ALAS1	ENST00000493402	human	ensembl	69_37n	1	novel	missense	c.626	p.A209V	1.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALAS1	HGNC	ENSG00000023330	154	0	0	46	42	47.73	-	-	-	T	52248109	C	T	52248109	3	4	281	1	0	0	0	0	1	0	0	0	484	718	25	4	1874	4	ALAS1	3	52248109	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4797565	52248109	145774321	249	31513										
FAM116A	0	genome.wustl.edu	37	chr3	57647228	57647229	+	Frame_Shift_Del	DEL	CA	CA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctggtgctatctgtttgagCacagtgtgaaaaaaatgaat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	57647228	57647229	CA	-	DEL	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	frame_shift_del	c.564_563	p.V188fs	1.000:1.000	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	48	0	0	12	16	55.17	-	-	-	-	57647229	CA	-	57647228	7	5	281	1	0	1	0	1	0	0	0	0	5447	697	25	0	1322	0	FAM116A	3	57647228	Frame_Shift_Del	DEL	CA	TCGA-AN-A0AK-01A-21W-A019-09	5399119	57647228	140375202	250	31514										
FLNB	0	genome.wustl.edu	37	chr3	58081909	58081910	+	Frame_Shift_Del	DEL	TG	TG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacaagaacaagacatactcTgtggagtatctgcccaaggt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	58081909	58081910	TG	-	DEL	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	frame_shift_del	c.948_949	p.V317fs	0.998:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	70	0	0	32	7	17.95	-	-	-	-	58081910	TG	-	58081909	7	5	281	1	0	1	0	1	0	0	0	0	5980	1567	55	0	970	0	FLNB	3	58081909	Frame_Shift_Del	DEL	TG	TCGA-AN-A0AK-01A-21W-A019-09	434681	58081909	139940521	251	31515										
PTPRG	0	genome.wustl.edu	37	chr3	61989117	61989118	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatttcactggggccacagcINSaatggctcagcgggctctga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	61989117	61989118	-	A	INS	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	frame_shift_ins	c.465_466	p.N155fs	1.000:1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	146	0	0	40	40	50	-	-	-	A	61989118	-	A	61989117	7	5	281	1	0	1	1	0	0	0	0	0	12885	709	25	0	479	0	PTPRG	3	61989117	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	3907208	61989117	136033313	252	31516										
GXYLT2	0	genome.wustl.edu	37	chr3	73016711	73016711	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaccagagtgtctctatgtAttcccctgccagtggaacta	8	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	73016711	73016711	A	T	SNP	GXYLT2	ENST00000389617	human	ensembl	69_37n	1	known	silent	c.990	p.V330	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT2	HGNC	ENSG00000172986	78	0	0	38	20	34.48	-	-	-	T	73016711	A	T	73016711	2	4	281	1	0	0	0	0	0	0	0	1	6955	436	16	5		5	GXYLT2	3	73016711	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	11027594	73016711	125005719	253	31517										
DHFRL1	0	genome.wustl.edu	37	chr3	93780312	93780312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccgttcttgccgatgcccAtgttttgggacacagcgacg	11	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	93780312	93780312	A	G	SNP	DHFRL1	ENST00000314636	human	ensembl	69_37n	-1	known	missense	c.44	p.M15T	1.000	pfam_DHFR_dom,superfamily_DHFR-like_dom	pfam_DHFR_dom,superfamily_DHFR-like_dom,prints_DHFR	-	no_errors	DHFRL1	HGNC	ENSG00000178700	109	0	0	75	14	15.73	-	-	-	G	93780312	A	G	93780312	3	3	281	1	0	0	0	0	1	0	0	0	4518	217	8	5	523	5	DHFRL1	3	93780312	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	20763601	93780312	104242118	254	31518										
ST3GAL6	0	genome.wustl.edu	37	chr3	98512545	98512545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatcacaatgtgactgcagaGcagctctttttgaaggacat	9	8	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	98512545	98512545	G	A	SNP	ST3GAL6	ENST00000394162	human	ensembl	69_37n	1	known	silent	c.936	p.E312	0.956	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225	163	0	0	92	66	41.77	-	-	-	A	98512545	G	A	98512545	2	1	281	1	0	0	0	0	0	0	0	1	15310	962	34	4		4	ST3GAL6	3	98512545	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4732233	98512545	99509885	255	31519										
COL8A1	0	genome.wustl.edu	37	chr3	99514534	99514534	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggaattgatggcgtgaaaCccccccatgcctacggggct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	99514534	99514534	C	-	DEL	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	frame_shift_del	c.1789	p.H599fs	0.314	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	40	0	0	40	12	23.08	-	-	-	-	99514534	C	-	99514534	7	5	281	1	0	1	0	1	0	0	0	0	3735	507	18	0	1795	0	COL8A1	3	99514534	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1001989	99514534	98507896	256	31520										
BBX	0	genome.wustl.edu	37	chr3	107517499	107517499	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagccaaaagagaaaagcaaGgaaaaccaagattacacacc	7	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	107517499	107517499	G	T	SNP	BBX	ENST00000416476	human	ensembl	69_37n	1	putative	nonsense	c.1474	p.G492*	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	116	0	0	104	18	14.75	-	-	-	T	107517499	G	T	107517499	4	4	281	1	0	0	0	0	0	1	0	0	1347	1000	35	4	2533	4	BBX	3	107517499	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8002965	107517499	90504931	257	31521										
CD96	0	genome.wustl.edu	37	chr3	111325589	111325589	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccctccactgagtgttacagAatctacccttgacacccaac	5	16	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	111325589	111325589	A	G	SNP	CD96	ENST00000283285	human	ensembl	69_37n	1	known	missense	c.1178	p.E393G	0.009	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	116	0	0	115	26	18.44	-	-	-	G	111325589	A	G	111325589	3	3	281	1	0	0	0	0	1	0	0	0	3077	246	9	5	1212	5	CD96	3	111325589	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3808090	111325589	86696841	258	31522										
TMPRSS7	0	genome.wustl.edu	37	chr3	111795940	111795940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcccactggtcagagagttCgcagtggggagaagtgctgg	16	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	111795940	111795940	C	T	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	missense	c.1795	p.R599C	0.056	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	189	0	0	160	40	20	-	-	-	T	111795940	C	T	111795940	3	4	281	1	0	0	0	0	1	0	0	0	16347	884	31	1	1845	1	TMPRSS7	3	111795940	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	470351	111795940	86226490	259	31523										
ATG3	0	genome.wustl.edu	37	chr3	112255139	112255139	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acttaaaacaaattggtaagTtttttttcctttttcttata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	112255139	112255139	T	-	DEL	ATG3	ENST00000495756	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG3	HGNC	ENSG00000144848	17	0	0	14	10	41.67	-	-	-	-	112255139	T	-	112255139	6	5	281	0	1	1	0	1	0	0	0	0	1099	1740	60	0		0	ATG3	3	112255139	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	459199	112255139	85767291	260	31524										
WDR52	0	genome.wustl.edu	37	chr3	113082076	113082077	+	Frame_Shift_Del	DEL	CT	CT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcctcaaagctttgatttgCtctctcttccgtgcctttat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	113082076	113082077	CT	-	DEL	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	frame_shift_del	c.2850_2849	p.E950fs	0.017:0.961	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	214	0	0	232	41	14.8	-	-	-	-	113082077	CT	-	113082076	7	5	281	1	0	1	0	1	0	0	0	0	17401	796	28	0	2789	0	WDR52	3	113082076	Frame_Shift_Del	DEL	CT	TCGA-AN-A0AK-01A-21W-A019-09	826937	113082076	84940354	261	31525										
ZBTB20	0	genome.wustl.edu	37	chr3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacctgggggtgtgcctgcaGggggggtcccattgctggca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	69_37n	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	77	0	0	36	20	33.33	-	-	-	-	114058003	G	-	114058003	7	5	281	1	0	1	0	1	0	0	0	0	17625	1000	35	0	154	0	ZBTB20	3	114058003	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	975927	114058003	83964427	262	31526										
TMEM39A	0	genome.wustl.edu	37	chr3	119176962	119176962	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagcaaccaacaggtagatgAaaaaaaggaattcaaagagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	119176962	119176962	A	-	DEL	TMEM39A	ENST00000319172	human	ensembl	69_37n	-1	known	frame_shift_del	c.239	p.F80fs	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142	98	0	0	101	14	11.97	-	-	-	-	119176962	A	-	119176962	7	5	281	1	0	1	0	1	0	0	0	0	16256	246	9	0	1255	0	TMEM39A	3	119176962	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	5118959	119176962	78845468	263	31527										
PLA1A	0	genome.wustl.edu	37	chr3	119325652	119325652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctaccccacagccaaagtgCgctgacttccagagcgccaa	8	17	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	119325652	119325652	C	T	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	silent	c.105	p.C35	0.998	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	275	0	0	270	64	19.16	-	-	-	T	119325652	C	T	119325652	2	4	281	1	0	0	0	0	0	0	0	1	12062	776	27	1		1	PLA1A	3	119325652	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	148690	119325652	78696778	264	31528										
DTX3L	0	genome.wustl.edu	37	chr3	122284779	122284779	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctgtgcccattttcctggtAcccactgaaaattcaataaa	5	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	122284779	122284779	A	G	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	silent	c.261	p.V87	0.365	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	76	0	0	43	10	18.87	-	-	-	G	122284779	A	G	122284779	2	3	281	1	0	0	0	0	0	0	0	1	4831	378	14	5		5	DTX3L	3	122284779	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2959127	122284779	75737651	265	31529										
HSPBAP1	0	genome.wustl.edu	37	chr3	122478177	122478177	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actttcctgtccatttcttcCaggaaacccgaagtcagacc	6	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	122478177	122478177	C	A	SNP	HSPBAP1	ENST00000306103	human	ensembl	69_37n	-1	known	nonsense	c.463	p.G155*	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087	124	0	0	96	31	24.41	-	-	-	A	122478177	C	A	122478177	4	1	281	1	0	0	0	0	0	1	0	0	7479	603	21	4	1023	4	HSPBAP1	3	122478177	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	193398	122478177	75544253	266	31530										
MYLK	0	genome.wustl.edu	37	chr3	123452570	123452570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacagtttgattttccttgaCctcctggctttggggcttgc	11	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	123452570	123452570	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.1273	p.V425I	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	252	0	0	188	46	19.66	-	-	-	T	123452570	C	T	123452570	3	4	281	1	0	0	0	0	1	0	0	0	10128	507	18	4	4571	4	MYLK	3	123452570	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	974393	123452570	74569860	267	31531										
KALRN	0	genome.wustl.edu	37	chr3	124201667	124201667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccctgcaggagatacaacagCggcatggtctggccaactcc	11	14	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	124201667	124201667	C	T	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.4198	p.R1400W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	133	0	0	98	48	32.88	-	-	-	T	124201667	C	T	124201667	3	4	281	1	0	0	0	0	1	0	0	0	8029	759	27	1	4308	1	KALRN	3	124201667	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	749097	124201667	73820763	268	31532										
ALDH1L1	0	genome.wustl.edu	37	chr3	125876306	125876306	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgtccagaccatcatccgcCcagaagatggaaaacccccc	8	16	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	125876306	125876306	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	nonsense	c.408	p.W136*	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	82	0	0	70	16	18.6	-	-	-	T	125876306	C	T	125876306	4	4	281	1	0	0	0	0	0	1	0	0	494	624	22	4	2380	4	ALDH1L1	3	125876306	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1674639	125876306	72146124	269	31533										
ACAD9	0	genome.wustl.edu	37	chr3	128631359	128631359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccttcccagatgctccagAaaacctagatgagcagatta	7	11	0	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	128631359	128631359	A	G	SNP	ACAD9	ENST00000308982	human	ensembl	69_37n	1	known	missense	c.1775	p.E592G	1.000	NULL	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646	55	0	0	45	9	16.67	-	-	-	G	128631359	A	G	128631359	3	3	281	1	0	0	0	0	1	0	0	0	111	246	9	5	1845	5	ACAD9	3	128631359	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2755053	128631359	69391071	270	31534										
TOPBP1	0	genome.wustl.edu	37	chr3	133358937	133358937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcatatttagagccaccaCgttctttcagtataagatga	6	9	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	133358937	133358937	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.2099	p.R700H	0.987	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	112	0	0	99	40	28.78	-	-	-	T	133358937	C	T	133358937	3	4	281	1	0	0	0	0	1	0	0	0	16465	536	19	1	2533	1	TOPBP1	3	133358937	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4727578	133358937	64663493	271	31535										
SRPRB	0	genome.wustl.edu	37	chr3	133526669	133526669	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagagtcaacaataacagggTaagatgtttgtggagttttg	12	4	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	133526669	133526669	T	C	SNP	SRPRB	ENST00000466490	human	ensembl	69_37n	1	known	splice_site	c.327+2	e3+2	1.000	-	-	-	no_errors	SRPRB	HGNC	ENSG00000144867	78	0	0	79	16	16.84	-	-	-	C	133526669	T	C	133526669	5	2	281	1	0	0	0	0	0	0	1	0	15254	1652	57	5	339	5	SRPRB	3	133526669	Splice_Site	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	167732	133526669	64495761	272	31536										
RYK	0	genome.wustl.edu	37	chr3	133921685	133921685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cactaatataaaacacacgcGtagaagtggttggagctgca	10	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	133921685	133921685	G	A	SNP	RYK	ENST00000427044	human	ensembl	69_37n	-1	known	missense	c.101	p.T34M	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RYK	HGNC	ENSG00000163785	123	0	0	88	61	40.94	-	-	-	A	133921685	G	A	133921685	3	1	281	1	0	0	0	0	1	0	0	0	13853	1145	40	1	1195	1	RYK	3	133921685	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	395016	133921685	64100745	273	31537										
TRIM42	0	genome.wustl.edu	37	chr3	140401472	140401472	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcctgtgcgagaagtgcctGcggcagctgcagaagcacgc	15	12	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	140401472	140401472	G	A	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	silent	c.510	p.L170	0.980	pfscan_Znf_RING	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	92	0	0	82	20	19.61	-	-	-	A	140401472	G	A	140401472	2	1	281	1	0	0	0	0	0	0	0	1	16613	1306	46	4		4	TRIM42	3	140401472	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6479787	140401472	57620958	274	31538										
TFDP2	0	genome.wustl.edu	37	chr3	141678557	141678557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctttggcaccagggatttcGcaagtttcagatcctccaga	9	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	141678557	141678557	G	A	SNP	TFDP2	ENST00000489671	human	ensembl	69_37n	-1	known	missense	c.1010	p.A337V	1.000	pfam_Transc_factor_DP_C,pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP2	HGNC	ENSG00000114126	219	0	0	218	45	17.11	-	-	-	A	141678557	G	A	141678557	3	1	281	1	0	0	0	0	1	0	0	0	15893	1087	38	1	342	1	TFDP2	3	141678557	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1277085	141678557	56343873	275	31539										
ATR	0	genome.wustl.edu	37	chr3	142180912	142180913	+	Frame_Shift_Del	DEL	CT	CT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaagttctcttctacgagaCtctgcatcttttcttaagca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	142180912	142180913	CT	-	DEL	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	frame_shift_del	c.7062_7061	p.E2354fs	1.000:1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	237	0	0	166	71	29.1	-	-	-	-	142180913	CT	-	142180912	7	5	281	1	0	1	0	1	0	0	0	0	1208	564	20	0	896	0	ATR	3	142180912	Frame_Shift_Del	DEL	CT	TCGA-AN-A0AK-01A-21W-A019-09	502355	142180912	55841518	276	31540										
TRPC1	0	genome.wustl.edu	37	chr3	142503808	142503808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taatctatactctcttgtctAcaatgaggataagaaaaaca	5	7	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	142503808	142503808	A	G	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.1223	p.Y408C	1.000	tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	93	0	0	94	14	12.96	-	-	-	G	142503808	A	G	142503808	3	3	281	1	0	0	0	0	1	0	0	0	16674	391	14	5	1143	5	TRPC1	3	142503808	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	322896	142503808	55518622	277	31541										
TRPC1	0	genome.wustl.edu	37	chr3	142521187	142521187	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcaatgataccttccattcGtgagtatcttttaaatgttt	6	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	142521187	142521187	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	splice_site	c.1757+1	e10+1	1.000	-	-	-	no_errors	TRPC1	HGNC	ENSG00000144935	99	0	0	85	41	32.54	-	-	-	A	142521187	G	A	142521187	5	1	281	1	0	0	0	0	0	0	1	0	16674	1159	40	1	1690	1	TRPC1	3	142521187	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	17379	142521187	55501243	278	31542										
MED12L	0	genome.wustl.edu	37	chr3	150877657	150877657	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagtcggcctacctgtctcgTcgtcttgcctacttttgtgc	9	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	150877657	150877657	T	C	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.876	p.R292	0.938	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	201	0	0	182	32	14.95	-	-	-	C	150877657	T	C	150877657	2	2	281	1	0	0	0	0	0	0	0	1	9500	1654	58	5		5	MED12L	3	150877657	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	8356470	150877657	47144773	279	31543										
MED12L	0	genome.wustl.edu	37	chr3	151093884	151093884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaagaacttatattggaccCtgtgctttcaaatatgcaag	7	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	151093884	151093884	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.3830	p.P1277L	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	88	0	0	62	28	31.11	-	-	-	T	151093884	C	T	151093884	3	4	281	1	0	0	0	0	1	0	0	0	9500	681	24	4	3932	4	MED12L	3	151093884	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	216227	151093884	46928546	280	31544										
IGSF10	0	genome.wustl.edu	37	chr3	151165209	151165209	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgaaatctgtgggttcttCaggtggtagtatttgtgaat	12	3	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	151165209	151165209	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.2560	p.E854K	0.117	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	529	1	0.19	523	110	17.3	-	-	-	T	151165209	C	T	151165209	3	4	281	1	0	0	0	0	1	0	0	0	7651	835	29	2	5371	2	IGSF10	3	151165209	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	71325	151165209	46857221	281	31545										
SSR3	0	genome.wustl.edu	37	chr3	156260929	156260929	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcccaccctgaccaccctgCtacttttccatataccacag	3	19	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	156260929	156260929	C	T	SNP	SSR3	ENST00000478842	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	SSR3	HGNC	ENSG00000114850	59	0	0	52	13	20	-	-	-	T	156260929	C	T	156260929	1	4	281	0	1	0	0	0	0	0	0	0	15283	812	28	4		4	SSR3	3	156260929	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5095720	156260929	41761501	282	31546										
TIPARP	0	genome.wustl.edu	37	chr3	156395578	156395580	+	In_Frame_Del	DEL	AGA	AGA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgccaaatgagactctctgAgaagatcactccattgaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	156395578	156395580	AGA	-	DEL	TIPARP	ENST00000295924	human	ensembl	69_37n	1	known	in_frame_del	c.92_94	p.K32in_frame_del	1.000:1.000:1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659	96	0	0	51	28	35.44	-	-	-	-	156395580	AGA	-	156395578	7	5	281	1	0	1	0	1	0	0	0	0	16019	304	11	0	94	0	TIPARP	3	156395578	In_Frame_Del	DEL	AGA	TCGA-AN-A0AK-01A-21W-A019-09	134649	156395578	41626852	283	31547										
SLC7A14	0	genome.wustl.edu	37	chr3	170244694	170244694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagctccccactgcacccgcCgggggtccagcgaggtgaag	14	16	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	170244694	170244694	C	T	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	missense	c.32	p.R11Q	1.000	NULL	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	57	0	0	56	12	17.14	-	-	-	T	170244694	C	T	170244694	3	4	281	1	0	0	0	0	1	0	0	0	14785	652	23	1	2311	1	SLC7A14	3	170244694	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	13849116	170244694	27777736	284	31548										
NCEH1	0	genome.wustl.edu	37	chr3	172351310	172351310	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtaactattcctagtccgGattcccactgagaagttggt	9	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	172351310	172351310	G	A	SNP	NCEH1	ENST00000538775	human	ensembl	69_37n	-1	known	silent	c.1302	p.I434	0.149	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	NCEH1	HGNC	ENSG00000144959	156	0	0	124	41	24.85	-	-	-	A	172351310	G	A	172351310	2	1	281	1	0	0	0	0	0	0	0	1	10287	1164	41	2		2	NCEH1	3	172351310	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2106616	172351310	25671120	285	31549										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	58	0	0	36	25	40.98	-	-	-	A	178936091	G	A	178936091	3	1	281	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6584781	178936091	19086339	286	31550										
EIF4G1	0	genome.wustl.edu	37	chr3	184039806	184039808	+	In_Frame_Del	DEL	AGG	AGG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggagaagctgagagtgagaaAggaggagaggaactgctccc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	184039806	184039808	AGG	-	DEL	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	in_frame_del	c.1455_1457	p.G487in_frame_del	0.997:1.000:1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	139	0	0	66	34	33.66	-	-	-	-	184039808	AGG	-	184039806	7	5	281	1	0	1	0	1	0	0	0	0	5073	69	3	0	1464	0	EIF4G1	3	184039806	In_Frame_Del	DEL	AGG	TCGA-AN-A0AK-01A-21W-A019-09	5103715	184039806	13982624	287	31551										
THPO	0	genome.wustl.edu	37	chr3	184090882	184090882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctacaagcatcaggaaacGcacctttcctcggagcaggt	9	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	184090882	184090882	G	A	SNP	THPO	ENST00000204615	human	ensembl	69_37n	-1	known	missense	c.481	p.R161C	1.000	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534	85	0	0	29	22	43.14	-	-	-	A	184090882	G	A	184090882	3	1	281	1	0	0	0	0	1	0	0	0	15967	1087	38	1	584	1	THPO	3	184090882	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	51076	184090882	13931548	288	31552										
ST6GAL1	0	genome.wustl.edu	37	chr3	186760990	186760990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaatacctctgaatgggagGgttatctgcccaaggagagc	12	9	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	186760990	186760990	G	T	SNP	ST6GAL1	ENST00000169298	human	ensembl	69_37n	1	known	missense	c.499	p.G167C	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GAL1	HGNC	ENSG00000073849	129	0	0	107	23	17.69	-	-	-	T	186760990	G	T	186760990	3	4	281	1	0	0	0	0	1	0	0	0	15312	1232	43	4	501	4	ST6GAL1	3	186760990	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2670108	186760990	11261440	289	31553										
ST6GAL1	0	genome.wustl.edu	37	chr3	186790685	186790685	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagacagtttgtacaatgaaGgaatcctaattgtatgggac	10	5	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	186790685	186790685	G	T	SNP	ST6GAL1	ENST00000169298	human	ensembl	69_37n	1	known	nonsense	c.754	p.G252*	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GAL1	HGNC	ENSG00000073849	226	0	0	134	40	22.99	-	-	-	T	186790685	G	T	186790685	4	4	281	1	0	0	0	0	0	1	0	0	15312	1001	35	4	764	4	ST6GAL1	3	186790685	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	29695	186790685	11231745	290	31554										
CLDN16	0	genome.wustl.edu	37	chr3	190120187	190120187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaatgcttttgatgggattcGcacctgtgatgagtacgatt	11	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	190120187	190120187	G	A	SNP	CLDN16	ENST00000264734	human	ensembl	69_37n	1	known	missense	c.386	p.R129H	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin16,prints_Claudin	-	no_errors	CLDN16	HGNC	ENSG00000113946	83	0	0	82	12	12.77	-	-	-	A	190120187	G	A	190120187	3	1	281	1	0	0	0	0	1	0	0	0	3507	1087	38	1	392	1	CLDN16	3	190120187	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3329502	190120187	7902243	291	31555										
ATP13A5	0	genome.wustl.edu	37	chr3	193002798	193002798	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgatgggccacagtgtggtgGtctcaaaacttaaaattgaa	11	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	193002798	193002798	G	A	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	missense	c.3131	p.T1044I	0.501	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	81	0	0	82	26	24.07	-	-	-	A	193002798	G	A	193002798	3	1	281	1	0	0	0	0	1	0	0	0	1131	1261	44	4	539	4	ATP13A5	3	193002798	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2882611	193002798	5019632	292	31556										
LSG1	0	genome.wustl.edu	37	chr3	194386349	194386351	+	In_Frame_Del	DEL	ATC	ATC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcgttcaaatggagtcaatAtcagcttctgttcctcttct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	194386349	194386351	ATC	-	DEL	LSG1	ENST00000265245	human	ensembl	69_37n	-1	known	in_frame_del	c.458_456	p.I153in_frame_del	0.981:0.979:0.982	NULL	pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802	157	0	0	175	25	12.44	-	-	-	-	194386351	ATC	-	194386349	7	5	281	1	0	1	0	1	0	0	0	0	9115	449	16	0	1558	0	LSG1	3	194386349	In_Frame_Del	DEL	ATC	TCGA-AN-A0AK-01A-21W-A019-09	1383551	194386349	3636081	293	31557										
MUC20	0	genome.wustl.edu	37	chr3	195452738	195452738	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtcacaaacatcgaggttAttaattgcagcatcacagaa	7	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	195452738	195452738	A	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.1264	p.I422V	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	51	0	0	33	5	13.16	-	-	-	G	195452738	A	G	195452738	3	3	281	1	0	0	0	0	1	0	0	0	10048	449	16	5	761	5	MUC20	3	195452738	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1066389	195452738	2569692	294	31558										
LRRC33	0	genome.wustl.edu	37	chr3	196388498	196388499	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catcctccccagctgcctcaINSccctgctggtggcctgcact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	3	196388498	196388499	-	C	INS	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	frame_shift_ins	c.1984_1985	p.L663fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	59	0	0	40	6	13.04	-	-	-	C	196388499	-	C	196388498	7	5	281	1	0	1	1	0	0	0	0	0	9054	159	6	0	1990	0	LRRC33	3	196388498	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	935760	196388498	1633932	295	31559										
ZNF721	0	genome.wustl.edu	37	chr4	435676	435676	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catgtgtagggtttctctccAgtatgaattctcctatgtac	8	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	435676	435676	A	G	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	silent	c.2580	p.T860	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	130	1	0.76	125	33	20.62	-	-	-	G	435676	A	G	435676	2	3	281	1	0	0	0	0	0	0	0	1	18218	175	7	5		5	ZNF721	4	435676	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09		435676	190718600	296	31560										
FAM193A	0	genome.wustl.edu	37	chr4	2648436	2648436	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaaccaccacacacgacacCtgcagtgaggacacatacag	9	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	2648436	2648436	C	A	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	silent	c.315	p.T105	0.997	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	191	0	0	132	28	17.5	-	-	-	A	2648436	C	A	2648436	2	1	281	1	0	0	0	0	0	0	0	1	5566	668	24	4		4	FAM193A	4	2648436	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2212760	2648436	188505840	297	31561										
STK32B	0	genome.wustl.edu	37	chr4	5468441	5468441	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccctttagaaagggaggttGaactgcgatcccacatttga	10	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	5468441	5468441	G	A	SNP	STK32B	ENST00000282908	human	ensembl	69_37n	1	known	silent	c.921	p.L307	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32B	HGNC	ENSG00000152953	66	0	0	38	11	22.45	-	-	-	A	5468441	G	A	5468441	2	1	281	1	0	0	0	0	0	0	0	1	15389	1281	45	2		2	STK32B	4	5468441	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2820005	5468441	185685835	298	31562										
WFS1	0	genome.wustl.edu	37	chr4	6303118	6303118	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcacctactgctaccttgtGccctacctggtgtgcttcat	9	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	6303118	6303118	G	A	SNP	WFS1	ENST00000226760	human	ensembl	69_37n	1	known	silent	c.1596	p.V532	0.991	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501	54	0	0	35	7	16.67	-	-	-	A	6303118	G	A	6303118	2	1	281	1	0	0	0	0	0	0	0	1	17457	1306	46	4		4	WFS1	4	6303118	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	834677	6303118	184851158	299	31563										
KIAA0232	0	genome.wustl.edu	37	chr4	6865646	6865646	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaaaattccttcccaggttAaaaaaatctgggatggaaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	6865646	6865646	A	-	DEL	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	frame_shift_del	c.3537	p.K1181fs	0.997	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	201	1	0.5	123	21	14.48	-	-	-	-	6865646	A	-	6865646	7	5	281	1	0	1	0	1	0	0	0	0	8215	359	13	0	3555	0	KIAA0232	4	6865646	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	562528	6865646	184288630	300	31564										
CC2D2A	0	genome.wustl.edu	37	chr4	15569050	15569050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgttcagtgaaaagcatgCtgcttccccaagcacgtaca	9	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	15569050	15569050	C	T	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.3233	p.A1078V	0.058	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	91	0	0	65	36	35.64	-	-	-	T	15569050	C	T	15569050	3	4	281	1	0	0	0	0	1	0	0	0	2753	797	28	4	3530	4	CC2D2A	4	15569050	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	8703404	15569050	175585226	301	31565										
SLIT2	0	genome.wustl.edu	37	chr4	20255442	20255442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaggcggcggggaaagatgCgcggcgttggctggcagatg	22	7	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	20255442	20255442	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.4	p.R2C	0.990	NULL	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	10	0	0	4	7	63.64	-	-	-	T	20255442	C	T	20255442	3	4	281	1	0	0	0	0	1	0	0	0	14829	768	27	1	6	1	SLIT2	4	20255442	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4686392	20255442	170898834	302	31566										
SLIT2	0	genome.wustl.edu	37	chr4	20618688	20618688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcattttgcctggctgtgagCcatgccacaagaaggtgtgt	13	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	20618688	20618688	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.4003	p.P1335S	1.000	smart_EGF-like	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	49	0	0	31	16	34.04	-	-	-	T	20618688	C	T	20618688	3	4	281	1	0	0	0	0	1	0	0	0	14829	739	26	4	4141	4	SLIT2	4	20618688	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	363246	20618688	170535588	303	31567										
GPR125	0	genome.wustl.edu	37	chr4	22446677	22446677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacacacctggtatcccgtaCcgtgatgttcttctccttta	6	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	22446677	22446677	C	T	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.625	p.V209I	0.997	smart_Cys-rich_flank_reg_C	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	88	0	0	68	24	26.09	-	-	-	T	22446677	C	T	22446677	3	4	281	1	0	0	0	0	1	0	0	0	6689	507	18	4	3396	4	GPR125	4	22446677	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1827989	22446677	168707599	304	31568										
SEL1L3	0	genome.wustl.edu	37	chr4	25836873	25836873	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagctctcggttccgaaacCtcgggaacttcttgacaatg	9	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	25836873	25836873	C	A	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.806	p.R269M	0.943	superfamily_ConA-like_lec_gl	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	175	0	0	188	46	19.57	-	-	-	A	25836873	C	A	25836873	3	1	281	1	0	0	0	0	1	0	0	0	14100	681	24	4	2680	4	SEL1L3	4	25836873	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3390196	25836873	165317403	305	31569										
RFC1	0	genome.wustl.edu	37	chr4	39310304	39310304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgccagtttcggagccagcGtaggagtttgttggcacagc	14	9	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	39310304	39310304	G	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.1837	p.R613C	0.998	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	383	0	0	312	81	20.61	-	-	-	A	39310304	G	A	39310304	3	1	281	1	0	0	0	0	1	0	0	0	13327	1145	40	1	1658	1	RFC1	4	39310304	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	13473431	39310304	151843972	306	31570										
LIMCH1	0	genome.wustl.edu	37	chr4	41621389	41621390	+	Frame_Shift_Del	DEL	AG	AG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctctgagaaagaagaaagcAgagagagaggaataccgcaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	41621389	41621390	AG	-	DEL	LIMCH1	ENST00000503057	human	ensembl	69_37n	1	known	frame_shift_del	c.390_391	p.E133fs	0.000:0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042	162	0	0	105	62	36.47	-	-	-	-	41621390	AG	-	41621389	7	5	281	1	0	1	0	1	0	0	0	0	8852	175	7	0	925	0	LIMCH1	4	41621389	Frame_Shift_Del	DEL	AG	TCGA-AN-A0AK-01A-21W-A019-09	2311085	41621389	149532887	307	31571										
CORIN	0	genome.wustl.edu	37	chr4	47663872	47663872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttagagtgttcacacaatgCcctagatgaacaagaaagac	8	8	1	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	47663872	47663872	C	T	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.1591	p.A531T	0.870	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	109	0	0	93	20	17.7	-	-	-	T	47663872	C	T	47663872	3	4	281	1	0	0	0	0	1	0	0	0	3782	753	26	4	1581	4	CORIN	4	47663872	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6042483	47663872	143490404	308	31572										
NIPAL1	0	genome.wustl.edu	37	chr4	48035028	48035028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtgggagcaggagaggctgCaaattttgctgcttatgctt	14	6	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	48035028	48035028	C	T	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	1	known	missense	c.389	p.A130V	0.829	pfam_Mg_trans_NIPA,pfam_DMT	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	44	0	0	24	7	22.58	-	-	-	T	48035028	C	T	48035028	3	4	281	1	0	0	0	0	1	0	0	0	10496	710	25	4	403	4	NIPAL1	4	48035028	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	371156	48035028	143119248	309	31573										
FIP1L1	0	genome.wustl.edu	37	chr4	54319187	54319188	+	Frame_Shift_Ins	INS	-	-	AG													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagagagaaagaccgagatINSagagagagagacagagacag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	54319187	54319188	-	AG	INS	FIP1L1	ENST00000337488	human	ensembl	69_37n	1	known	frame_shift_ins	c.1386_1387	p.D465fs	0.078:0.091	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	149	0	0	117	13	10	-	-	-	AG	54319188	-	AG	54319187	7	5	281	1	0	1	1	0	0	0	0	0	5942	1403	49	0	1479	0	FIP1L1	4	54319187	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	6284159	54319187	136835089	310	31574										
FIP1L1	0	genome.wustl.edu	37	chr4	54319218	54319218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acagagacagagagcgagacCgtgatcgggacagagaaaga	15	7	0	6			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	54319218	54319218	C	T	SNP	FIP1L1	ENST00000337488	human	ensembl	69_37n	1	known	missense	c.1417	p.R473C	0.996	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	140	0	0	102	26	20.31	-	-	-	T	54319218	C	T	54319218	3	4	281	1	0	0	0	0	1	0	0	0	5942	652	23	1	1510	1	FIP1L1	4	54319218	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	31	54319218	136835058	311	31575										
YTHDC1	0	genome.wustl.edu	37	chr4	69203143	69203143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actggctggatctgcttgcaCgtctatccacttcaagccca	8	14	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	69203143	69203143	C	T	SNP	YTHDC1	ENST00000344157	human	ensembl	69_37n	-1	known	missense	c.485	p.R162H	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896	120	0	0	101	20	16.53	-	-	-	T	69203143	C	T	69203143	3	4	281	1	0	0	0	0	1	0	0	0	17593	536	19	1	1754	1	YTHDC1	4	69203143	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	14883925	69203143	121951133	312	31576										
UGT2B4	0	genome.wustl.edu	37	chr4	70360966	70360966	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttaccctctctatgaaagtcAtttggtcacttagttctgac	6	10	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	70360966	70360966	A	G	SNP	UGT2B4	ENST00000305107	human	ensembl	69_37n	-1	known	missense	c.614	p.M205T	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	170	0	0	193	34	14.98	-	-	-	G	70360966	A	G	70360966	3	3	281	1	0	0	0	0	1	0	0	0	17058	217	8	5	996	5	UGT2B4	4	70360966	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1157823	70360966	120793310	313	31577										
UGT2A1	0	genome.wustl.edu	37	chr4	70455098	70455098	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctttttcttgacctattctcTttttttcttctttcctatct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	70455098	70455098	T	-	DEL	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	frame_shift_del	c.1603	p.R535fs	0.933	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	106	0	0	103	22	17.6	-	-	-	-	70455098	T	-	70455098	7	5	281	1	0	1	0	1	0	0	0	0	17050	1617	56	0	11	0	UGT2A1	4	70455098	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	94132	70455098	120699178	314	31578										
ENAM	0	genome.wustl.edu	37	chr4	71495227	71495228	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgaaaaaaatgttggtgcINSttcggtgcaggcttggaacc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	71495227	71495228	-	T	INS	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	frame_shift_ins	c.10_11	p.R5fs	1.000:0.998	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	190	0	0	172	36	17.31	-	-	-	T	71495228	-	T	71495227	7	5	281	1	0	1	1	0	0	0	0	0	5149	797	28	0	12	0	ENAM	4	71495227	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1040129	71495227	119659049	315	31579										
NPFFR2	0	genome.wustl.edu	37	chr4	73012922	73012922	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaggaaatgaggaagatctAcaccactgtgctgtttgcca	10	9	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	73012922	73012922	A	G	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.962	p.Y321C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	212	0	0	210	46	17.97	-	-	-	G	73012922	A	G	73012922	3	3	281	1	0	0	0	0	1	0	0	0	10650	391	14	5	982	5	NPFFR2	4	73012922	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1517695	73012922	118141354	316	31580										
NPFFR2	0	genome.wustl.edu	37	chr4	73013327	73013327	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttccagctccagctctgccAaaaaagagcaaagcctatgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	73013327	73013327	A	-	DEL	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	frame_shift_del	c.1367	p.R458fs	0.492	prints_NPFF_rcpt_2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	174	0	0	163	35	17.68	-	-	-	-	73013327	A	-	73013327	7	5	281	1	0	1	0	1	0	0	0	0	10650	130	5	0	1387	0	NPFFR2	4	73013327	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	405	73013327	118140949	317	31581										
ANKRD17	0	genome.wustl.edu	37	chr4	74005556	74005556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccacttgctgtaaccgtgcaTagtctccctcagaaagctgc	8	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	74005556	74005556	T	C	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.2777	p.Y926C	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	206	0	0	202	31	13.3	-	-	-	C	74005556	T	C	74005556	3	2	281	1	0	0	0	0	1	0	0	0	646	1406	49	5	5114	5	ANKRD17	4	74005556	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	992229	74005556	117148720	318	31582										
AFP	0	genome.wustl.edu	37	chr4	74313371	74313372	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaccaattttcttcaggggINSaaaaaaatatcttcttggca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	74313371	74313372	-	A	INS	AFP	ENST00000395792	human	ensembl	69_37n	1	known	frame_shift_ins	c.1036_1037	p.N348fs	0.903:0.959	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Alpha-fetoprotein	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Alpha-fetoprotein,prints_Serum_albumin	-	no_errors	AFP	HGNC	ENSG00000081051	71	0	0	80	11	12.09	-	-	-	A	74313372	-	A	74313371	7	5	281	1	0	1	1	0	0	0	0	0	363	1175	41	0	1066	0	AFP	4	74313371	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	307815	74313371	116840905	319	31583										
PF4V1	0	genome.wustl.edu	37	chr4	74719801	74719801	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcttggatctgcaagccctgCtgtacaagaaaatcattaag	9	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	74719801	74719801	C	T	SNP	PF4V1	ENST00000226524	human	ensembl	69_37n	1	known	silent	c.277	p.L93	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	PF4V1	HGNC	ENSG00000109272	56	0	0	47	10	17.54	-	-	-	T	74719801	C	T	74719801	2	4	281	1	0	0	0	0	0	0	0	1	11827	796	28	4		4	PF4V1	4	74719801	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	406430	74719801	116434475	320	31584										
CXCL10	0	genome.wustl.edu	37	chr4	76943950	76943950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgatgcaggtacagcgtaCagttctagagagaggtactc	13	8	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	76943950	76943950	C	T	SNP	CXCL10	ENST00000306602	human	ensembl	69_37n	-1	known	missense	c.82	p.V28I	0.004	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	CXCL10	HGNC	ENSG00000169245	186	0	0	200	40	16.6	-	-	-	T	76943950	C	T	76943950	3	4	281	1	0	0	0	0	1	0	0	0	4109	478	17	4	226	4	CXCL10	4	76943950	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2224149	76943950	114210326	321	31585										
FGF5	0	genome.wustl.edu	37	chr4	81207950	81207950	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttacactgtattgaagtcacGtcatttgtttcaatgtgact	7	7	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	81207950	81207950	G	A	SNP	FGF5	ENST00000503413	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.238	-	-	-	no_errors	FGF5	HGNC	ENSG00000138675	56	0	0	56	11	16.42	-	-	-	A	81207950	G	A	81207950	1	1	281	0	1	0	0	0	0	0	0	0	5901	1160	40	1		1	FGF5	4	81207950	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4264000	81207950	109946326	322	31586										
BMP3	0	genome.wustl.edu	37	chr4	81974652	81974652	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaatgtagtgcttaaagtaTaccctaacatgacagtagag	9	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	81974652	81974652	T	C	SNP	BMP3	ENST00000282701	human	ensembl	69_37n	1	known	missense	c.1381	p.Y461H	0.999	pfam_TGF-b_C,smart_TGF-b_C,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785	140	0	0	106	59	35.76	-	-	-	C	81974652	T	C	81974652	3	2	281	1	0	0	0	0	1	0	0	0	1466	1406	49	5	1391	5	BMP3	4	81974652	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	766702	81974652	109179624	323	31587										
SCD5	0	genome.wustl.edu	37	chr4	83626534	83626534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgatgggcaccagctgtcaCacccagagcggccaggagga	15	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	83626534	83626534	C	T	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	missense	c.265	p.V89M	0.994	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	40	0	0	31	8	20.51	-	-	-	T	83626534	C	T	83626534	3	4	281	1	0	0	0	0	1	0	0	0	13974	478	17	4	949	4	SCD5	4	83626534	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1651882	83626534	107527742	324	31588										
MAPK10	0	genome.wustl.edu	37	chr4	87022291	87022291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagtcatcatgaagcttgtgCctgctgtcctggccagtcca	11	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	87022291	87022291	C	T	SNP	MAPK10	ENST00000359221	human	ensembl	69_37n	-1	known	missense	c.644	p.G215D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK10	HGNC	ENSG00000109339	92	0	0	88	16	15.38	-	-	-	T	87022291	C	T	87022291	3	4	281	1	0	0	0	0	1	0	0	0	9343	739	26	4	783	4	MAPK10	4	87022291	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3395757	87022291	104131985	325	31589										
SLC10A6	0	genome.wustl.edu	37	chr4	87746685	87746685	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aactggagcatggtgatgcaCatctgaatattctgagctcc	10	9	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	87746685	87746685	C	G	SNP	SLC10A6	ENST00000273905	human	ensembl	69_37n	-1	known	missense	c.807	p.M269I	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283	100	0	0	100	22	18.03	-	-	-	G	87746685	C	G	87746685	3	3	281	1	0	0	0	0	1	0	0	0	14467	478	17	4	334	4	SLC10A6	4	87746685	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	724394	87746685	103407591	326	31590										
SPARCL1	0	genome.wustl.edu	37	chr4	88411522	88411522	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatgacaggaactagcataGgtctgattgtcagtgccaca	11	8	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	88411522	88411522	G	T	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	silent	c.1434	p.T478	1.000	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	458	0	0	382	77	16.78	-	-	-	T	88411522	G	T	88411522	2	4	281	1	0	0	0	0	0	0	0	1	15087	987	35	4		4	SPARCL1	4	88411522	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	664837	88411522	102742754	327	31591										
PKD2	0	genome.wustl.edu	37	chr4	88996056	88996056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagctagagattatggagcGagccaaactgaagaggaggg	16	5	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	88996056	88996056	G	A	SNP	PKD2	ENST00000237596	human	ensembl	69_37n	1	known	missense	c.2615	p.R872Q	1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_HAND_2,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	57	0	0	52	15	22.39	-	-	-	A	88996056	G	A	88996056	3	1	281	1	0	0	0	0	1	0	0	0	12040	1058	37	1	2669	1	PKD2	4	88996056	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	584534	88996056	102158220	328	31592										
MTTP	0	genome.wustl.edu	37	chr4	100527949	100527949	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcctgggaggacttgaaaaAgcagagaaaaaagaggacac	12	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	100527949	100527949	A	G	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	silent	c.1389	p.K463	0.393	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	87	0	0	62	38	38	-	-	-	G	100527949	A	G	100527949	2	3	281	1	0	0	0	0	0	0	0	1	10036	69	3	5		5	MTTP	4	100527949	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	11531893	100527949	90626327	329	31593										
H2AFZ	0	genome.wustl.edu	37	chr4	100869623	100869624	+	Frame_Shift_Del	DEL	AC	AC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaatccaggcatcctttagAcagtcttctgttgtcctttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	100869623	100869624	AC	-	DEL	H2AFZ	ENST00000296417	human	ensembl	69_37n	-1	known	frame_shift_del	c.383_382	p.V128fs	0.998:1.000	NULL	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFZ	HGNC	ENSG00000164032	61	0	0	27	4	12.9	-	-	-	-	100869624	AC	-	100869623	7	5	281	1	0	1	0	1	0	0	0	0	6982	275	10	0	7	0	H2AFZ	4	100869623	Frame_Shift_Del	DEL	AC	TCGA-AN-A0AK-01A-21W-A019-09	341674	100869623	90284653	330	31594										
INTS12	0	genome.wustl.edu	37	chr4	106621097	106621097	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagcagaatctttactcttTgaatgcaagaaacctagtgc	7	9	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	106621097	106621097	T	C	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	silent	c.66	p.S22	0.897	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	492	0	0	478	125	20.66	-	-	-	C	106621097	T	C	106621097	2	2	281	1	0	0	0	0	0	0	0	1	7831	1799	63	5		5	INTS12	4	106621097	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	5751474	106621097	84533179	331	31595										
SGMS2	0	genome.wustl.edu	37	chr4	108829842	108829842	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgatcattgcttattatatCacaacacgactgttttggtg	8	7	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	108829842	108829842	C	T	SNP	SGMS2	ENST00000359079	human	ensembl	69_37n	1	known	silent	c.849	p.I283	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGMS2	HGNC	ENSG00000164023	237	0	0	147	36	19.67	-	-	-	T	108829842	C	T	108829842	2	4	281	1	0	0	0	0	0	0	0	1	14303	816	29	2		2	SGMS2	4	108829842	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2208745	108829842	82324434	332	31596										
C4orf21	0	genome.wustl.edu	37	chr4	113539167	113539167	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctttagatttattcgggggTaaagcaaaatcatagttaat	8	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	113539167	113539167	T	C	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	silent	c.2031	p.L677	0.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	176	0	0	162	28	14.74	-	-	-	C	113539167	T	C	113539167	2	2	281	1	0	0	0	0	0	0	0	1	2275	1635	57	5		5	C4orf21	4	113539167	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	4709325	113539167	77615109	333	31597										
SPRY1	0	genome.wustl.edu	37	chr4	124323339	124323339	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgcactgctcccaggacccTaccatcctgtttggcctgta	8	15	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	124323339	124323339	T	C	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	missense	c.593	p.L198P	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	147	0	0	100	22	18.03	-	-	-	C	124323339	T	C	124323339	3	2	281	1	0	0	0	0	1	0	0	0	15196	1522	53	5	595	5	SPRY1	4	124323339	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	10784172	124323339	66830937	334	31598										
FAT4	0	genome.wustl.edu	37	chr4	126238506	126238506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcgggagcccctggacttcGaagctcggcgccaatactcg	13	14	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	126238506	126238506	G	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.940	p.E314K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	35	0	0	26	7	21.21	-	-	-	A	126238506	G	A	126238506	3	1	281	1	0	0	0	0	1	0	0	0	5738	1059	37	1	942	1	FAT4	4	126238506	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1915167	126238506	64915770	335	31599										
SCLT1	0	genome.wustl.edu	37	chr4	129869675	129869675	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctagttcttcttccactgcTtttttttccttaatgactcg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	129869675	129869675	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	frame_shift_del	c.1269	p.A424fs	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	94	0	0	85	31	26.05	-	-	-	-	129869675	T	-	129869675	7	5	281	1	0	1	0	1	0	0	0	0	13994	1606	56	0	825	0	SCLT1	4	129869675	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	3631169	129869675	61284601	336	31600										
PCDH10	0	genome.wustl.edu	37	chr4	134072187	134072187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccacatttcgccccgggcgCgggagcttttcggactctcg	13	15	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	134072187	134072187	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.892	p.R298W	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	47	0	0	29	9	23.68	-	-	-	T	134072187	C	T	134072187	3	4	281	1	0	0	0	0	1	0	0	0	11580	759	27	1	894	1	PCDH10	4	134072187	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4202512	134072187	57082089	337	31601										
PCDH10	0	genome.wustl.edu	37	chr4	134073238	134073238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgccgagtcccggccaagcGcgacccccagcggccttatg	12	18	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	134073238	134073238	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.1943	p.R648H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	18	0	0	13	10	43.48	-	-	-	A	134073238	G	A	134073238	3	1	281	1	0	0	0	0	1	0	0	0	11580	1087	38	1	1945	1	PCDH10	4	134073238	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1051	134073238	57081038	338	31602										
MAML3	0	genome.wustl.edu	37	chr4	140810631	140810632	+	In_Frame_Ins	INS	-	-	GGT													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggggcctggagctgtggaINSggtggcggctgctgctgctg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	140810631	140810632	-	GGT	INS	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	in_frame_ins	c.1959_1958	p.655in_frame_insP	0.201:0.631	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	338	0	0	309	35	10.17	-	-	-	GGT	140810632	-	GGT	140810631	7	5	281	1	0	1	1	0	0	0	0	0	9278	291	11	0	1473	0	MAML3	4	140810631	In_Frame_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	6737393	140810631	50343645	339	31603	256	2								
MAML3	0	genome.wustl.edu	37	chr4	140810638	140810638	+	Missense_Mutation	SNP	G	G	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctggagctgtggaggtggcGgctgctgctgctgctgctgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	140810638	140810638	G	T	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.1952	p.P651Q	0.021	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	326	0	0	266	54	16.88	-	-	-	T	140810638	G	T	140810638	3	4	281	1	0	0	0	0	1	0	0	0	9278	1116	39	3	1480	3	MAML3	4	140810638	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	7	140810638	50343638	340	31604	256	2								
USP38	0	genome.wustl.edu	37	chr4	144106826	144106826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgcacgataccaccggccaGagttcgagtccttcttcaac	8	15	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	144106826	144106826	G	T	SNP	USP38	ENST00000307017	human	ensembl	69_37n	1	known	nonsense	c.223	p.E75*	0.999	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP38	HGNC	ENSG00000170185	41	0	0	19	6	24	-	-	-	T	144106826	G	T	144106826	4	4	281	1	0	0	0	0	0	1	0	0	17166	943	33	2	225	2	USP38	4	144106826	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3296188	144106826	47047450	341	31605										
LRBA	0	genome.wustl.edu	37	chr4	151231401	151231401	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtgtctgtagaatagactCtgaaacttttatcccagaag	8	8	2	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	151231401	151231401	C	A	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	nonsense	c.3787	p.E1263*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	62	0	0	66	8	10.81	-	-	-	A	151231401	C	A	151231401	4	1	281	1	0	0	0	0	0	1	0	0	8997	913	32	2	753	2	LRBA	4	151231401	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7124575	151231401	39922875	342	31606										
FHDC1	0	genome.wustl.edu	37	chr4	153864297	153864299	+	In_Frame_Del	DEL	CCT	CCT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gattcatgattgggcagacaCctcctccagcacctcctcca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	153864297	153864299	CCT	-	DEL	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	in_frame_del	c.88_90	p.P32in_frame_del	0.067:0.117:0.006	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	52	0	0	28	9	24.32	-	-	-	-	153864299	CCT	-	153864297	7	5	281	1	0	1	0	1	0	0	0	0	5922	507	18	0	90	0	FHDC1	4	153864297	In_Frame_Del	DEL	CCT	TCGA-AN-A0AK-01A-21W-A019-09	2632896	153864297	37289979	343	31607										
PLRG1	0	genome.wustl.edu	37	chr4	155465643	155465643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actggggttttggcattgtaGgggcttttttagccatcagt	13	6	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	155465643	155465643	G	T	SNP	PLRG1	ENST00000393905	human	ensembl	69_37n	-1	known	missense	c.548	p.P183H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566	130	0	0	110	26	19.12	-	-	-	T	155465643	G	T	155465643	3	4	281	1	0	0	0	0	1	0	0	0	12180	1000	35	4	1032	4	PLRG1	4	155465643	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1601346	155465643	35688633	344	31608										
FGG	0	genome.wustl.edu	37	chr4	155527997	155527997	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcatgccattatgggatgtgAaaaacttgtcactaggatca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	155527997	155527997	A	-	DEL	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	frame_shift_del	c.989	p.F330fs	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	271	0	0	259	43	14.19	-	-	-	-	155527997	A	-	155527997	7	5	281	1	0	1	0	1	0	0	0	0	5916	246	9	0	399	0	FGG	4	155527997	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	62354	155527997	35626279	345	31609										
RXFP1	0	genome.wustl.edu	37	chr4	159566200	159566200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgggttgtatctgcagttAcctgctttggaaacattttt	9	7	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	159566200	159566200	A	G	SNP	RXFP1	ENST00000307765	human	ensembl	69_37n	1	known	missense	c.1255	p.T419A	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP1	HGNC	ENSG00000171509	84	0	0	70	10	12.5	-	-	-	G	159566200	A	G	159566200	3	3	281	1	0	0	0	0	1	0	0	0	13845	391	14	5	1313	5	RXFP1	4	159566200	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4038203	159566200	31588076	346	31610										
KLHL2	0	genome.wustl.edu	37	chr4	166160017	166160017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctaattgattatgtttacaCtgcagaaattcaggttacag	8	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	166160017	166160017	C	T	SNP	KLHL2	ENST00000226725	human	ensembl	69_37n	1	known	missense	c.347	p.T116I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466	202	0	0	185	31	14.35	-	-	-	T	166160017	C	T	166160017	3	4	281	1	0	0	0	0	1	0	0	0	8427	565	20	4	403	4	KLHL2	4	166160017	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6593817	166160017	24994259	347	31611										
GALNT7	0	genome.wustl.edu	37	chr4	174225221	174225221	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atctaccgtcttgagggctgGcaaggaaatcctccgcccat	10	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	174225221	174225221	G	A	SNP	GALNT7	ENST00000265000	human	ensembl	69_37n	1	known	nonsense	c.1341	p.W447*	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586	139	0	0	130	18	12.16	-	-	-	A	174225221	G	A	174225221	4	1	281	1	0	0	0	0	0	1	0	0	6268	1212	42	4	1371	4	GALNT7	4	174225221	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8065204	174225221	16929055	348	31612										
SPCS3	0	genome.wustl.edu	37	chr4	177248342	177248342	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagttgtcctatgggacaaGattgttttgagaggtgataa	12	4	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	177248342	177248342	G	T	SNP	SPCS3	ENST00000503362	human	ensembl	69_37n	1	known	missense	c.324	p.K108N	1.000	pfam_SPC22,pirsf_SPC22	pfam_SPC22,pirsf_SPC22	-	no_errors	SPCS3	HGNC	ENSG00000129128	11	0	0	14	6	30	-	-	-	T	177248342	G	T	177248342	3	4	281	1	0	0	0	0	1	0	0	0	15116	933	33	2	338	2	SPCS3	4	177248342	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3023121	177248342	13905934	349	31613										
SNX25	0	genome.wustl.edu	37	chr4	186283088	186283088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcttaaaagacaaatccggGacacagtcagctggattttc	8	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	4	186283088	186283088	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	missense	c.2170	p.D724N	1.000	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	87	0	0	77	16	17.2	-	-	-	A	186283088	G	A	186283088	3	1	281	1	0	0	0	0	1	0	0	0	14985	1174	41	2	2232	2	SNX25	4	186283088	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	9034746	186283088	4871188	350	31614										
LRRC14B	0	genome.wustl.edu	37	chr5	195153	195153	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccctccggcgcctcttcacCgcactctgtgagctccccga	9	20	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	195153	195153	C	A	SNP	LRRC14B	ENST00000328278	human	ensembl	69_37n	1	novel	silent	c.1230	p.T410	0.000	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	30	0	0	12	16	57.14	-	-	-	A	195153	C	A	195153	2	1	281	1	0	0	0	0	0	0	0	1	9035	639	23	3		3	LRRC14B	5	195153	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		195153	180720107	351	31615										
BRD9	0	genome.wustl.edu	37	chr5	876276	876276	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgatctggtccaggaggtcGtccaccactttcttgctgta	11	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	876276	876276	G	A	SNP	BRD9	ENST00000523139	human	ensembl	69_37n	-1	known	nonsense	c.43	p.R15*	0.804	pfam_DUF3512	pfam_DUF3512	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRD9	HGNC	ENSG00000028310	27	0	0	28	11	28.21	-	-	-	A	876276	G	A	876276	4	1	281	1	0	0	0	0	0	1	0	0	1515	1136	40	1	490	1	BRD9	5	876276	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	681123	876276	180038984	352	31616										
SLC12A7	0	genome.wustl.edu	37	chr5	1065482	1065482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caccgtgttgtgcttcaggcCgcccaggccggccgactgga	14	15	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	1065482	1065482	C	T	SNP	SLC12A7	ENST00000264930	human	ensembl	69_37n	-1	known	missense	c.2353	p.G785S	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504	23	0	0	6	9	60	-	-	-	T	1065482	C	T	1065482	3	4	281	1	0	0	0	0	1	0	0	0	14477	652	23	1	926	1	SLC12A7	5	1065482	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	189206	1065482	179849778	353	31617										
SLC6A3	0	genome.wustl.edu	37	chr5	1432721	1432721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaggggagctccgtggtgaAggaggagaagagatagtgca	18	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	1432721	1432721	A	G	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	missense	c.511	p.F171L	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	35	0	0	27	10	27.03	-	-	-	G	1432721	A	G	1432721	3	3	281	1	0	0	0	0	1	0	0	0	14774	72	3	5	1399	5	SLC6A3	5	1432721	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	367239	1432721	179482539	354	31618										
IRX4	0	genome.wustl.edu	37	chr5	1879743	1879743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcggcggccacgtcatcttgTtctccttcttgaggcgccgg	13	14	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	1879743	1879743	T	C	SNP	IRX4	ENST00000231357	human	ensembl	69_37n	-1	known	missense	c.611	p.N204S	1.000	smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX4	HGNC	ENSG00000113430	20	0	0	10	3	23.08	-	-	-	C	1879743	T	C	1879743	3	2	281	1	0	0	0	0	1	0	0	0	7900	1725	60	5	956	5	IRX4	5	1879743	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	447022	1879743	179035517	355	31619										
KIAA0947	0	genome.wustl.edu	37	chr5	5463483	5463483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgaaaaccctcagagcagaCcagaggcccgttcagatgca	10	12	2	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	5463483	5463483	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.4036	p.P1346S	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	69	0	0	78	23	22.77	-	-	-	T	5463483	C	T	5463483	3	4	281	1	0	0	0	0	1	0	0	0	8254	507	18	4	4086	4	KIAA0947	5	5463483	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3583740	5463483	175451777	356	31620										
DNAH5	0	genome.wustl.edu	37	chr5	13766212	13766212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgaaacagcagcagtacgCaatccatgatccgcatgatg	9	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	13766212	13766212	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.9974	p.C3325Y	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	113	0	0	107	22	17.05	-	-	-	T	13766212	C	T	13766212	3	4	281	1	0	0	0	0	1	0	0	0	4640	710	25	4	3984	4	DNAH5	5	13766212	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	8302729	13766212	167149048	357	31621										
ADAMTS12	0	genome.wustl.edu	37	chr5	33881193	33881193	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagactctaggggccagggcAgaggaaggagatgccagagc	18	8	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	33881193	33881193	A	G	SNP	ADAMTS12	ENST00000509762	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	143	1	0.69	142	34	19.32	-	-	-	G	33881193	A	G	33881193	1	3	281	0	1	0	0	0	0	0	0	0	257	203	7	5		5	ADAMTS12	5	33881193	RNA	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	20114981	33881193	147034067	358	31622										
NIPBL	0	genome.wustl.edu	37	chr5	36971044	36971044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgataataaagtttctggtcCgttgtctggcaattcagcta	9	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	36971044	36971044	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.677	p.P226L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	129	0	0	165	29	14.95	-	-	-	T	36971044	C	T	36971044	3	4	281	1	0	0	0	0	1	0	0	0	10500	652	23	1	699	1	NIPBL	5	36971044	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3089851	36971044	143944216	359	31623										
RPL37	0	genome.wustl.edu	37	chr5	40835273	40835273	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgcgattcacaaacaccacaGtcacaactcaccatctcgct	4	17	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	40835273	40835273	G	A	SNP	RPL37	ENST00000504562	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL37	HGNC	ENSG00000145592	37	0	0	31	17	35.42	-	-	-	A	40835273	G	A	40835273	1	1	281	0	1	0	0	0	0	0	0	0	13675	1044	36	4		4	RPL37	5	40835273	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3864229	40835273	140079987	360	31624										
IL31RA	0	genome.wustl.edu	37	chr5	55168270	55168270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atatgacatactggagattaGagaacataggtaagtgttat	10	3	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	55168270	55168270	G	A	SNP	IL31RA	ENST00000447346	human	ensembl	69_37n	1	known	missense	c.445	p.E149K	0.000	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509	157	0	0	126	16	11.27	-	-	-	A	55168270	G	A	55168270	3	1	281	1	0	0	0	0	1	0	0	0	7745	943	33	2	459	2	IL31RA	5	55168270	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	14332997	55168270	125746990	361	31625										
ACTBL2	0	genome.wustl.edu	37	chr5	56777574	56777574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttcatggtgctgggtgccaGggttatgatttctttctgca	12	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	56777574	56777574	G	A	SNP	ACTBL2	ENST00000423391	human	ensembl	69_37n	-1	known	silent	c.961	p.L321	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTBL2	HGNC	ENSG00000169067	149	0	0	75	36	32.14	-	-	-	A	56777574	G	A	56777574	2	1	281	1	0	0	0	0	0	0	0	1	194	991	35	4		4	ACTBL2	5	56777574	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1609304	56777574	124137686	362	31626										
ACTBL2	0	genome.wustl.edu	37	chr5	56777838	56777838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgttccggtgaggaggatgCggctgccctgaccatctcct	13	14	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	56777838	56777838	C	T	SNP	ACTBL2	ENST00000423391	human	ensembl	69_37n	-1	known	missense	c.697	p.A233T	0.942	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTBL2	HGNC	ENSG00000169067	104	0	0	98	34	25.76	-	-	-	T	56777838	C	T	56777838	3	4	281	1	0	0	0	0	1	0	0	0	194	768	27	1	437	1	ACTBL2	5	56777838	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	264	56777838	124137422	363	31627										
ERCC8	0	genome.wustl.edu	37	chr5	60187968	60187968	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcacacatccaccttactgTttttttttagggtggtggtc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	60187968	60187968	T	-	DEL	ERCC8	ENST00000462279	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERCC8	HGNC	ENSG00000049167	70	0	0	39	17	30.36	-	-	-	-	60187968	T	-	60187968	6	5	281	0	1	1	0	1	0	0	0	0	5256	1740	60	0		0	ERCC8	5	60187968	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	3410130	60187968	120727292	364	31628										
SLC30A5	0	genome.wustl.edu	37	chr5	68425349	68425349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggaggcatactttcaacatAtgtctggcctaagtactgga	10	8	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	68425349	68425349	A	G	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.2203	p.M735V	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	98	0	0	67	25	27.17	-	-	-	G	68425349	A	G	68425349	3	3	281	1	0	0	0	0	1	0	0	0	14647	449	16	5	2353	5	SLC30A5	5	68425349	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	8237381	68425349	112489911	365	31629										
MCCC2	0	genome.wustl.edu	37	chr5	70898399	70898400	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctactacccagtgactgtgINSaaaaaacaattacgggccca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	70898399	70898400	-	A	INS	MCCC2	ENST00000340941	human	ensembl	69_37n	1	known	frame_shift_ins	c.450_451	p.Q152fs	1.000:1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	MCCC2	HGNC	ENSG00000131844	290	0	0	160	99	38.22	-	-	-	A	70898400	-	A	70898399	7	5	281	1	0	1	1	0	0	0	0	0	9446	1277	45	0	468	0	MCCC2	5	70898399	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2473050	70898399	110016861	366	31630										
TMEM171	0	genome.wustl.edu	37	chr5	72419566	72419566	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggtttctgttcttgacaagCggcatgctcatcagcgtcct	11	11	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	72419566	72419566	C	T	SNP	TMEM171	ENST00000454765	human	ensembl	69_37n	1	known	silent	c.366	p.S122	0.837	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111	75	0	0	44	7	13.73	-	-	-	T	72419566	C	T	72419566	2	4	281	1	0	0	0	0	0	0	0	1	16183	767	27	1		1	TMEM171	5	72419566	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1521167	72419566	108495694	367	31631										
TMEM174	0	genome.wustl.edu	37	chr5	72469364	72469364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagttcaaaatgctctcctgCcagttgtgcaaagaaagtga	9	8	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	72469364	72469364	C	T	SNP	TMEM174	ENST00000296776	human	ensembl	69_37n	1	known	silent	c.294	p.C98	0.997	NULL	NULL	-	no_errors	TMEM174	HGNC	ENSG00000164325	173	0	0	79	28	26.17	-	-	-	T	72469364	C	T	72469364	2	4	281	1	0	0	0	0	0	0	0	1	16185	747	26	4		4	TMEM174	5	72469364	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	49798	72469364	108445896	368	31632										
HMGCR	0	genome.wustl.edu	37	chr5	74646165	74646165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaagaagaagaaaataagcCgaatcctgtaactcagaggg	11	6	1	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	74646165	74646165	C	T	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	missense	c.746	p.P249L	1.000	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	126	0	0	76	54	41.54	-	-	-	T	74646165	C	T	74646165	3	4	281	1	0	0	0	0	1	0	0	0	7282	652	23	1	772	1	HMGCR	5	74646165	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2176801	74646165	106269095	369	31633										
F2RL1	0	genome.wustl.edu	37	chr5	76129179	76129179	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcctctctctggccattggGgtctttctgttcccagcctt	8	14	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	76129179	76129179	G	A	SNP	F2RL1	ENST00000296677	human	ensembl	69_37n	1	known	silent	c.747	p.G249	0.042	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2RL1	HGNC	ENSG00000164251	177	0	0	119	33	21.71	-	-	-	A	76129179	G	A	76129179	2	1	281	1	0	0	0	0	0	0	0	1	5381	1219	43	4		4	F2RL1	5	76129179	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1483014	76129179	104786081	370	31634										
GPR98	0	genome.wustl.edu	37	chr5	90084103	90084103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggagaagctaaattagactcCagagctaaagatgttacatt	9	6	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	90084103	90084103	C	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	silent	c.13869	p.S4623	0.999	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	158	0	0	109	25	18.66	-	-	-	T	90084103	C	T	90084103	2	4	281	1	0	0	0	0	0	0	0	1	6772	581	21	4		4	GPR98	5	90084103	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	13954924	90084103	90831157	371	31635										
CHD1	0	genome.wustl.edu	37	chr5	98223850	98223851	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatatctaacatccgcaccaINStttgtgaaaaaataagaact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	98223850	98223851	-	T	INS	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2438_2437	p.M813fs	1.000:1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	42	0	0	23	21	47.73	-	-	-	T	98223851	-	T	98223850	7	5	281	1	0	1	1	0	0	0	0	0	3352	217	8	0	2774	0	CHD1	5	98223850	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	8139747	98223850	82691410	372	31636										
PPIP5K2	0	genome.wustl.edu	37	chr5	102494154	102494156	+	Splice_Site	DEL	AGG	AGG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgatttgaggatttattttcAggagattatgcaggatttcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	102494154	102494156	AGG	-	DEL	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	splice_site_del	c.1616-2_1616-1	e15-1	1.000:1.000:1.000	-	-	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	180	0	0	91	55	36.42	-	-	-	-	102494156	AGG	-	102494154	8	5	281	1	0	1	0	1	0	0	1	0	12410	202	7	0	1672	0	PPIP5K2	5	102494154	Splice_Site	DEL	AGG	TCGA-AN-A0AK-01A-21W-A019-09	4270304	102494154	78421106	373	31637										
FER	0	genome.wustl.edu	37	chr5	108203542	108203542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atatgttgcacaatcagtatGtattggcgttgaaaggggca	12	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	108203542	108203542	G	A	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	missense	c.556	p.V186I	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	110	0	0	53	57	51.82	-	-	-	A	108203542	G	A	108203542	3	1	281	1	0	0	0	0	1	0	0	0	5859	1377	48	4	570	4	FER	5	108203542	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5709388	108203542	72711718	374	31638										
REEP5	0	genome.wustl.edu	37	chr5	112214534	112214537	+	Splice_Site	DEL	TGTT	TGTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcacggtagctttcttcgcTgtttgtttgttaggagggaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	112214534	112214537	TGTT	-	DEL	REEP5	ENST00000379638	human	ensembl	69_37n	-1	known	splice_site_del	c.521-5_521-2	e5-2	0.810:0.586:0.513:0.489	-	-	-	no_errors	REEP5	HGNC	ENSG00000129625	196	0	0	82	55	40.15	-	-	-	-	112214537	TGTT	-	112214534	8	5	281	1	0	1	0	1	0	0	1	0	13291	1594	55	0	54	0	REEP5	5	112214534	Splice_Site	DEL	TGTT	TCGA-AN-A0AK-01A-21W-A019-09	4010992	112214534	68700726	375	31639										
TSSK1B	0	genome.wustl.edu	37	chr5	112769462	112769462	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgcgtctctggaggctgttGggggggcccttcctctgtct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	112769462	112769462	G	-	DEL	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	frame_shift_del	c.1075	p.Q359fs	0.005	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	37	0	0	15	8	32	-	-	-	-	112769462	G	-	112769462	7	5	281	1	0	1	0	1	0	0	0	0	16764	1357	47	0	32	0	TSSK1B	5	112769462	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	554928	112769462	68145798	376	31640										
ZNF474	0	genome.wustl.edu	37	chr5	121487948	121487948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcttagcccccctgtgatccCggcccgcaggcctggattcc	11	18	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	121487948	121487948	C	T	SNP	ZNF474	ENST00000296600	human	ensembl	69_37n	1	known	missense	c.263	p.P88L	0.728	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF474	HGNC	ENSG00000164185	267	0	0	101	120	54.3	-	-	-	T	121487948	C	T	121487948	3	4	281	1	0	0	0	0	1	0	0	0	18028	652	23	1	265	1	ZNF474	5	121487948	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	8718486	121487948	59427312	377	31641										
SNCAIP	0	genome.wustl.edu	37	chr5	121776431	121776431	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacgtagcctcacagcatggCtaccttggatgcatacaggt	10	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	121776431	121776431	C	T	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	silent	c.1545	p.G515	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	130	0	0	88	12	12	-	-	-	T	121776431	C	T	121776431	2	4	281	1	0	0	0	0	0	0	0	1	14930	784	28	4		4	SNCAIP	5	121776431	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	288483	121776431	59138829	378	31642										
MEGF10	0	genome.wustl.edu	37	chr5	126769093	126769093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtgtgctgagggacgctggGgccccaactgctccctgccc	14	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	126769093	126769093	G	A	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	missense	c.1732	p.G578S	1.000	smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	115	0	0	77	14	15.38	-	-	-	A	126769093	G	A	126769093	3	1	281	1	0	0	0	0	1	0	0	0	9531	1232	43	4	1782	4	MEGF10	5	126769093	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4992662	126769093	54146167	379	31643										
SLC12A2	0	genome.wustl.edu	37	chr5	127510242	127510242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgtctacagaagaattatTgtcatcacaagagaaatctc	6	8	5	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	127510242	127510242	T	C	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	1	known	missense	c.2813	p.L938S	0.998	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	80	0	0	37	40	51.95	-	-	-	C	127510242	T	C	127510242	3	2	281	1	0	0	0	0	1	0	0	0	14472	1821	63	5	2891	5	SLC12A2	5	127510242	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	741149	127510242	53405018	380	31644										
IL3	0	genome.wustl.edu	37	chr5	131398386	131398386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atccaatccatatcaaggacGgtgactggaatgaattccgg	10	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	131398386	131398386	G	T	SNP	IL3	ENST00000296870	human	ensembl	69_37n	1	known	missense	c.361	p.G121C	0.000	pfam_Interleukin_3,superfamily_4_helix_cytokine-like_core,pirsf_Interleukin_3	pfam_Interleukin_3,superfamily_4_helix_cytokine-like_core,pirsf_Interleukin_3,prints_Interleukin_3	-	no_errors	IL3	HGNC	ENSG00000164399	213	0	0	154	37	19.37	-	-	-	T	131398386	G	T	131398386	3	4	281	1	0	0	0	0	1	0	0	0	7743	1116	39	3	379	3	IL3	5	131398386	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3888144	131398386	49516874	381	31645										
P4HA2	0	genome.wustl.edu	37	chr5	131543412	131543412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacacctactttaggttttgCgatctccttgatcctctcga	7	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	131543412	131543412	C	T	SNP	P4HA2	ENST00000166534	human	ensembl	69_37n	-1	known	missense	c.1069	p.A357T	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682	43	0	0	31	8	20.51	-	-	-	T	131543412	C	T	131543412	3	4	281	1	0	0	0	0	1	0	0	0	11430	768	27	1	634	1	P4HA2	5	131543412	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	145026	131543412	49371848	382	31646										
P4HA2	0	genome.wustl.edu	37	chr5	131543475	131543475	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtagtacctgacgatgtgcgGgctgtcccactcgtcctcct	11	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	131543475	131543475	G	T	SNP	P4HA2	ENST00000166534	human	ensembl	69_37n	-1	known	missense	c.1006	p.P336T	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682	58	0	0	51	10	16.39	-	-	-	T	131543475	G	T	131543475	3	4	281	1	0	0	0	0	1	0	0	0	11430	1232	43	4	697	4	P4HA2	5	131543475	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	63	131543475	49371785	383	31647										
TRPC7	0	genome.wustl.edu	37	chr5	135551913	135551913	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgacttcgtcattttctctGtccacctgggctttcaggac	8	12	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	135551913	135551913	G	A	SNP	TRPC7	ENST00000502753	human	ensembl	69_37n	-1	novel	nonsense	c.2227	p.Q743*	1.000	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPC7	HGNC	ENSG00000069018	16	0	0	6	4	40	-	-	-	A	135551913	G	A	135551913	4	1	281	1	0	0	0	0	0	1	0	0	16680	1368	48	4	202	4	TRPC7	5	135551913	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4008438	135551913	45363347	384	31648										
KDM3B	0	genome.wustl.edu	37	chr5	137727458	137727458	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggctcagctcttaccagtGggggcccaagcctctctgcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	137727458	137727458	G	-	DEL	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	frame_shift_del	c.2137	p.G714fs	0.902	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	193	0	0	90	23	20.18	-	-	-	-	137727458	G	-	137727458	7	5	281	1	0	1	0	1	0	0	0	0	8181	1348	47	0	2167	0	KDM3B	5	137727458	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	2175545	137727458	43187802	385	31649										
TMEM173	0	genome.wustl.edu	37	chr5	138857986	138857986	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcagccatactcaggttatCaggcaccccacagtccaatg	8	14	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	138857986	138857986	C	T	SNP	TMEM173	ENST00000330794	human	ensembl	69_37n	-1	known	missense	c.628	p.D210N	1.000	NULL	NULL	-	no_errors	TMEM173	HGNC	ENSG00000184584	183	0	0	80	92	53.18	-	-	-	T	138857986	C	T	138857986	3	4	281	1	0	0	0	0	1	0	0	0	16184	826	29	2	523	2	TMEM173	5	138857986	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1130528	138857986	42057274	386	31650										
PCDHA3	0	genome.wustl.edu	37	chr5	140181371	140181371	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatcccttggactcgtgttgAaaaaaaatttaaatcgagag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140181371	140181371	A	-	DEL	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	frame_shift_del	c.589	p.N199fs	0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	80	0	0	44	22	32.84	-	-	-	-	140181371	A	-	140181371	7	5	281	1	0	1	0	1	0	0	0	0	11598	247	9	0	591	0	PCDHA3	5	140181371	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1323385	140181371	40733889	387	31651										
PCDHA7	0	genome.wustl.edu	37	chr5	140215411	140215411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcactgtgtcggcgggggaCgcggacgcgcagaagaacgc	17	11	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140215411	140215411	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	silent	c.1443	p.D481	0.163	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	29	0	0	7	9	56.25	-	-	-	T	140215411	C	T	140215411	2	4	281	1	0	0	0	0	0	0	0	1	11602	535	19	1		1	PCDHA7	5	140215411	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	34040	140215411	40699849	388	31652										
PCDHA11	0	genome.wustl.edu	37	chr5	140250430	140250430	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgcagttaacaagctagtacCgcggtcggtgggtgcgggcc	16	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140250430	140250430	C	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1742	p.P581Q	0.004	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	33	0	0	8	4	33.33	-	-	-	A	140250430	C	A	140250430	3	1	281	1	0	0	0	0	1	0	0	0	11594	652	23	3	1744	3	PCDHA11	5	140250430	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	35019	140250430	40664830	389	31653										
PCDHA11	0	genome.wustl.edu	37	chr5	140250672	140250672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccggcgctgacggccacgGccaccgtgctggtgtcgttg	16	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140250672	140250672	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1984	p.A662T	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	23	0	0	7	6	46.15	-	-	-	A	140250672	G	A	140250672	3	1	281	1	0	0	0	0	1	0	0	0	11594	1203	42	4	1986	4	PCDHA11	5	140250672	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	242	140250672	40664588	390	31654										
PCDHGB6	0	genome.wustl.edu	37	chr5	140788732	140788732	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacaccatggaagtggaagcGaaggacggaggtggtctctc	15	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140788732	140788732	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	silent	c.963	p.A321	0.080	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	87	0	0	55	16	22.54	-	-	-	A	140788732	G	A	140788732	2	1	281	1	0	0	0	0	0	0	0	1	11640	1045	37	1		1	PCDHGB6	5	140788732	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	538060	140788732	40126528	391	31655										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789346	140789346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctttgatcacgagcagctgcGcgccttcgcgctcacgctgc	11	16	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140789346	140789346	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.1577	p.R526H	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	20	0	0	18	4	18.18	-	-	-	A	140789346	G	A	140789346	3	1	281	1	0	0	0	0	1	0	0	0	11640	1087	38	1	1579	1	PCDHGB6	5	140789346	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	614	140789346	40125914	392	31656										
PCDHGA10	0	genome.wustl.edu	37	chr5	140793453	140793453	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttgtcagtgtgactgtcttCgatgcaaatgacaacgcgcc	10	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	140793453	140793453	C	T	SNP	PCDHGA10	ENST00000398610	human	ensembl	69_37n	1	known	silent	c.711	p.F237	0.038	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846	30	0	0	8	4	33.33	-	-	-	T	140793453	C	T	140793453	2	4	281	1	0	0	0	0	0	0	0	1	11624	883	31	1		1	PCDHGA10	5	140793453	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4107	140793453	40121807	393	31657										
PDGFRB	0	genome.wustl.edu	37	chr5	149501507	149501507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcgatgtctgcatatttgacGtctcctttcatgtccagcat	7	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	149501507	149501507	G	A	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	silent	c.2280	p.D760	0.480	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	50	0	0	35	14	28.57	-	-	-	A	149501507	G	A	149501507	2	1	281	1	0	0	0	0	0	0	0	1	11735	1136	40	1		1	PDGFRB	5	149501507	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8708054	149501507	31413753	394	31658										
SLC36A2	0	genome.wustl.edu	37	chr5	150704982	150704982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatggctgggaagtggcggGcattcttcatcttgttttcc	14	8	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	150704982	150704982	G	A	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	missense	c.875	p.A292V	0.931	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	106	0	0	70	9	11.39	-	-	-	A	150704982	G	A	150704982	3	1	281	1	0	0	0	0	1	0	0	0	14683	1203	42	4	588	4	SLC36A2	5	150704982	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1203475	150704982	30210278	395	31659										
IL12B	0	genome.wustl.edu	37	chr5	158749505	158749505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcctcgcatcttagaaaggTcttatttttgggttctggat	11	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	158749505	158749505	T	C	SNP	IL12B	ENST00000231228	human	ensembl	69_37n	-1	known	missense	c.379	p.T127A	1.000	pirsf_IL_12_beta,pfam_Interleukin-12_bsu_cen-dom,superfamily_Fibronectin_type3	pirsf_IL_12_beta,pfam_Interleukin-12_bsu_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL_12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL12B	HGNC	ENSG00000113302	85	0	0	25	27	51.92	-	-	-	C	158749505	T	C	158749505	3	2	281	1	0	0	0	0	1	0	0	0	7679	1667	58	5	623	5	IL12B	5	158749505	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	8044523	158749505	22165755	396	31660										
ADRA1B	0	genome.wustl.edu	37	chr5	159344245	159344245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctagaggtgctcggctactgGgtgctggggcggatcttctg	17	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	159344245	159344245	G	T	SNP	ADRA1B	ENST00000306675	human	ensembl	69_37n	1	known	missense	c.333	p.W111C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrnrgc_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1B,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1B	HGNC	ENSG00000170214	70	0	0	30	9	23.08	-	-	-	T	159344245	G	T	159344245	3	4	281	1	0	0	0	0	1	0	0	0	335	1241	43	4	335	4	ADRA1B	5	159344245	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	594740	159344245	21571015	397	31661										
NSD1	0	genome.wustl.edu	37	chr5	176720848	176720848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcagggaaatgggaatgtcCgtggcatcagtgtgacatct	13	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	176720848	176720848	C	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.6479	p.P2160L	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	149	0	0	105	33	23.91	-	-	-	T	176720848	C	T	176720848	3	4	281	1	0	0	0	0	1	0	0	0	10742	652	23	1	6565	1	NSD1	5	176720848	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	17376603	176720848	4194412	398	31662										
RAB24	0	genome.wustl.edu	37	chr5	176729805	176729805	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagtagattctactcatggcCtcatagcgctcagagcctgc	9	12	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	176729805	176729805	C	A	SNP	RAB24	ENST00000303251	human	ensembl	69_37n	-1	known	missense	c.213	p.E71D	0.999	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB24	HGNC	ENSG00000169228	104	0	0	44	5	10.2	-	-	-	A	176729805	C	A	176729805	3	1	281	1	0	0	0	0	1	0	0	0	12994	680	24	4	422	4	RAB24	5	176729805	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	8957	176729805	4185455	399	31663										
MAML1	0	genome.wustl.edu	37	chr5	179201171	179201171	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaatggacatgcccacattCcacggcagaccaacgtgggc	10	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	179201171	179201171	C	A	SNP	MAML1	ENST00000292599	human	ensembl	69_37n	1	known	missense	c.2344	p.P782T	0.906	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	42	0	0	12	3	20	-	-	-	A	179201171	C	A	179201171	3	1	281	1	0	0	0	0	1	0	0	0	9276	855	30	2	2362	2	MAML1	5	179201171	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2471366	179201171	1714089	400	31664										
TBC1D9B	0	genome.wustl.edu	37	chr5	179297324	179297324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtccaggagcctgaacatgcGccctgccagcagaggtgtgt	14	12	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	179297324	179297324	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.2656	p.R886C	0.993	pfscan_EF_HAND_2	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	29	0	0	7	8	53.33	-	-	-	A	179297324	G	A	179297324	3	1	281	1	0	0	0	0	1	0	0	0	15723	1087	38	1	1124	1	TBC1D9B	5	179297324	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	96153	179297324	1617936	401	31665										
TBC1D9B	0	genome.wustl.edu	37	chr5	179318453	179318453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgtagttgttggagatgaAcatctggccagggatgtgca	15	5	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	179318453	179318453	A	G	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	missense	c.970	p.F324L	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	55	0	0	24	19	44.19	-	-	-	G	179318453	A	G	179318453	3	3	281	1	0	0	0	0	1	0	0	0	15723	43	2	5	2850	5	TBC1D9B	5	179318453	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	21129	179318453	1596807	402	31666										
TRIM7	0	genome.wustl.edu	37	chr5	180630381	180630381	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttaaaaagctctggtttgtaCaacaattatgtggacaccct	7	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	5	180630381	180630381	C	T	SNP	TRIM7	ENST00000509199	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.086	-	-	-	no_errors	TRIM7	HGNC	ENSG00000146054	54	0	0	36	4	10	-	-	-	T	180630381	C	T	180630381	1	4	281	0	1	0	0	0	0	0	0	0	16639	493	17	4		4	TRIM7	5	180630381	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1311928	180630381	284879	403	31667										
TXNDC5	0	genome.wustl.edu	37	chr6	7904872	7904872	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccgtgcagtccactttagcCacatagactttggcatcttc	8	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	7904872	7904872	C	A	SNP	TXNDC5	ENST00000379757	human	ensembl	69_37n	-1	known	silent	c.348	p.V116	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264	96	0	0	43	5	10.42	-	-	-	A	7904872	C	A	7904872	2	1	281	1	0	0	0	0	0	0	0	1	16896	581	21	4		4	TXNDC5	6	7904872	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		7904872	163210195	404	31668										
EDN1	0	genome.wustl.edu	37	chr6	12294561	12294561	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagactgttccaagcttgggAaaaagtgtatttatcagcag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	12294561	12294561	A	-	DEL	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	frame_shift_del	c.457	p.K154fs	0.009	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	281	0	0	261	57	17.65	-	-	-	-	12294561	A	-	12294561	7	5	281	1	0	1	0	1	0	0	0	0	4951	247	9	0	471	0	EDN1	6	12294561	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	4389689	12294561	158820506	405	31669										
ALDH5A1	0	genome.wustl.edu	37	chr6	24532384	24532384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggctatagcaatcgctaacGcagctgatgttgggttagca	12	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	24532384	24532384	G	A	SNP	ALDH5A1	ENST00000348925	human	ensembl	69_37n	1	known	missense	c.1420	p.A474T	0.988	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294	50	0	0	48	8	14.29	-	-	-	A	24532384	G	A	24532384	3	1	281	1	0	0	0	0	1	0	0	0	502	1087	38	1	1458	1	ALDH5A1	6	24532384	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	12237823	24532384	146582683	406	31670										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043669	26043669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaagcctcgcccgcgatgcGctcgaagatgtcgttgacga	13	12	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	26043669	26043669	G	A	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.217	p.R73C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	129	0	0	82	38	31.67	-	-	-	A	26043669	G	A	26043669	3	1	281	1	0	0	0	0	1	0	0	0	7192	1087	38	1	167	1	HIST1H2BB	6	26043669	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1511285	26043669	145071398	407	31671										
HIST1H2BF	0	genome.wustl.edu	37	chr6	26200095	26200095	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acggccgtacgcctgctgctGcccggggagctggctaagca	15	14	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	26200095	26200095	G	A	SNP	HIST1H2BF	ENST00000359985	human	ensembl	69_37n	1	known	silent	c.309	p.L103	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BF	HGNC	ENSG00000197846	109	0	0	78	30	27.78	-	-	-	A	26200095	G	A	26200095	2	1	281	1	0	0	0	0	0	0	0	1	7196	1306	46	4		4	HIST1H2BF	6	26200095	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	156426	26200095	144914972	408	31672										
HIST1H2AE	0	genome.wustl.edu	37	chr6	26217309	26217309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgtgtgcaccgcctcctccGcaaaggcaactactccgaac	8	18	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	26217309	26217309	G	A	SNP	HIST1H2AE	ENST00000303910	human	ensembl	69_37n	1	known	missense	c.107	p.R36H	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274	81	0	0	74	13	14.94	-	-	-	A	26217309	G	A	26217309	3	1	281	1	0	0	0	0	1	0	0	0	7183	1087	38	1	109	1	HIST1H2AE	6	26217309	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	17214	26217309	144897758	409	31673										
BTN2A2	0	genome.wustl.edu	37	chr6	26385556	26385556	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacttccaagaaggcaggtcCtacgatgaggccatcctacg	10	12	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	26385556	26385556	C	A	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	silent	c.408	p.S136	0.785	smart_Ig_sub	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	125	0	0	88	22	20	-	-	-	A	26385556	C	A	26385556	2	1	281	1	0	0	0	0	0	0	0	1	1570	668	24	4		4	BTN2A2	6	26385556	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	168247	26385556	144729511	410	31674										
BTN2A2	0	genome.wustl.edu	37	chr6	26390265	26390265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagcgcatctccctggatgGtggccctagctgtcatcctg	11	15	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	26390265	26390265	G	A	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	missense	c.757	p.V253M	0.453	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	322	0	0	261	62	19.2	-	-	-	A	26390265	G	A	26390265	3	1	281	1	0	0	0	0	1	0	0	0	1570	1261	44	4	771	4	BTN2A2	6	26390265	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4709	26390265	144724802	411	31675										
HIST1H2AI	0	genome.wustl.edu	37	chr6	27776216	27776216	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggcccgcgacaacaagaagActcgcatcatcccgcgtcac	9	17	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	27776216	27776216	A	T	SNP	HIST1H2AI	ENST00000358739	human	ensembl	69_37n	1	known	missense	c.229	p.T77S	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AI	HGNC	ENSG00000196747	77	0	0	51	7	12.07	-	-	-	T	27776216	A	T	27776216	3	4	281	1	0	0	0	0	1	0	0	0	7186	275	10	5	231	5	HIST1H2AI	6	27776216	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1385951	27776216	143338851	412	31676										
HIST1H2AM	0	genome.wustl.edu	37	chr6	27860700	27860701	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcgcgggatgatgcgggtcINStttttgttgtcgcgggctgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	27860700	27860701	-	T	INS	HIST1H2AM	ENST00000359611	human	ensembl	69_37n	-1	known	frame_shift_ins	c.228_227	p.T77fs	1.000:1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AM	HGNC	ENSG00000233224	93	0	0	110	17	13.39	-	-	-	T	27860701	-	T	27860700	7	5	281	1	0	1	1	0	0	0	0	0	7190	912	32	0	168	0	HIST1H2AM	6	27860700	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	84484	27860700	143254367	413	31677										
GPX5	0	genome.wustl.edu	37	chr6	28497212	28497212	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgttaccagtattatcacttAaaaaaaatcttccagatgga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	28497212	28497212	A	-	DEL	GPX5	ENST00000442674	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	GPX5	HGNC	ENSG00000224586	269	0	0	216	111	33.43	-	-	-	-	28497212	A	-	28497212	6	5	281	0	1	1	0	1	0	0	0	0	6794	377	13	0		0	GPX5	6	28497212	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	636512	28497212	142617855	414	31678										
SCAND3	0	genome.wustl.edu	37	chr6	28540692	28540692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtgttgttttacattctgGcgcaagttccttaatctggg	10	7	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	28540692	28540692	G	A	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.2974	p.P992S	0.945	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	147	0	0	103	66	39.05	-	-	-	A	28540692	G	A	28540692	3	1	281	1	0	0	0	0	1	0	0	0	13963	1203	42	4	1007	4	SCAND3	6	28540692	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	43480	28540692	142574375	415	31679										
TRIM26	0	genome.wustl.edu	37	chr6	30153672	30153672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcagggtcttagcaggaggCgtgttcctggccacttgagc	14	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30153672	30153672	C	T	SNP	TRIM26	ENST00000437089	human	ensembl	69_37n	-1	known	missense	c.1601	p.R534H	0.027	superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127	35	0	0	43	7	14	-	-	-	T	30153672	C	T	30153672	3	4	281	1	0	0	0	0	1	0	0	0	16596	768	27	1	22	1	TRIM26	6	30153672	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1612980	30153672	140961395	416	31680										
TRIM39	0	genome.wustl.edu	37	chr6	30309645	30309645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctggctactgagggtttcaCctcaggtcgacactactggg	12	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30309645	30309645	C	T	SNP	TRIM39	ENST00000376656	human	ensembl	69_37n	1	known	missense	c.1166	p.T389I	1.000	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM39	HGNC	ENSG00000204599	93	0	0	44	10	18.52	-	-	-	T	30309645	C	T	30309645	3	4	281	1	0	0	0	0	1	0	0	0	16609	507	18	4	1192	4	TRIM39	6	30309645	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	155973	30309645	140805422	417	31681										
PRR3	0	genome.wustl.edu	37	chr6	30530350	30530350	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctctgtagccctatgatgGctactgtgaggctcttctaa	9	10	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30530350	30530350	G	A	SNP	PRR3	ENST00000481741	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	PRR3	HGNC	ENSG00000204576	71	0	0	69	11	13.75	-	-	-	A	30530350	G	A	30530350	1	1	281	0	1	0	0	0	0	0	0	0	12678	1218	42	4		4	PRR3	6	30530350	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	220705	30530350	140584717	418	31682										
ABCF1	0	genome.wustl.edu	37	chr6	30547721	30547721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctccaggccgtatctgaggAacagcagcctgcactcaagg	11	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30547721	30547721	A	G	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.503	p.E168G	0.983	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	77	0	0	48	28	36.84	-	-	-	G	30547721	A	G	30547721	3	3	281	1	0	0	0	0	1	0	0	0	65	246	9	5	529	5	ABCF1	6	30547721	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	17371	30547721	140567346	419	31683										
MDC1	0	genome.wustl.edu	37	chr6	30672555	30672555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctagtagcctgagacgtagGctcaggggtaacaggctggt	15	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30672555	30672555	G	A	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.4405	p.P1469S	0.001	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	223	0	0	197	33	14.29	-	-	-	A	30672555	G	A	30672555	3	1	281	1	0	0	0	0	1	0	0	0	9474	1203	42	4	1888	4	MDC1	6	30672555	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	124834	30672555	140442512	420	31684										
MDC1	0	genome.wustl.edu	37	chr6	30673051	30673051	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtggtccgagatgtgggcttGggggtgacaggtcggtctgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30673051	30673051	G	-	DEL	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	frame_shift_del	c.3909	p.K1304fs	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	393	0	0	312	44	11.73	-	-	-	-	30673051	G	-	30673051	7	5	281	1	0	1	0	1	0	0	0	0	9474	1335	47	0	2384	0	MDC1	6	30673051	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	496	30673051	140442016	421	31685										
VARS2	0	genome.wustl.edu	37	chr6	30892268	30892268	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaagagctctggcagaggctGccccccaggcctggttgccc	14	15	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	30892268	30892268	G	A	SNP	VARS2	ENST00000541562	human	ensembl	69_37n	1	known	silent	c.2694	p.L898	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS2	HGNC	ENSG00000137411	17	0	0	12	4	25	-	-	-	A	30892268	G	A	30892268	2	1	281	1	0	0	0	0	0	0	0	1	17221	1306	46	4		4	VARS2	6	30892268	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	219217	30892268	140222799	422	31686										
POU5F1	0	genome.wustl.edu	37	chr6	31138068	31138068	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acggtgcagggctccggggaGgccccatcggagttgctctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	31138068	31138068	G	-	DEL	POU5F1	ENST00000259915	human	ensembl	69_37n	-1	known	frame_shift_del	c.330	p.S111fs	0.991	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531	67	0	0	62	8	11.11	-	-	-	-	31138068	G	-	31138068	7	5	281	1	0	1	0	1	0	0	0	0	12354	987	35	0	772	0	POU5F1	6	31138068	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	245800	31138068	139976999	423	31687										
MSH5	0	genome.wustl.edu	37	chr6	31730261	31730261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcctaacctggacttgaacGttttcatgagccaggaagtg	10	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	31730261	31730261	G	A	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.2509	p.V837I	0.021	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	39	0	0	37	10	21.28	-	-	-	A	31730261	G	A	31730261	3	1	281	1	0	0	0	0	1	0	0	0	9945	1145	40	1	2606	1	MSH5	6	31730261	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	592193	31730261	139384806	424	31688										
CFB	0	genome.wustl.edu	37	chr6	31914322	31914322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacgtacctgcagatctacGgggtcctggagcaccctgaa	11	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	31914322	31914322	G	A	SNP	CFB	ENST00000460718	human	ensembl	69_37n	1	known	missense	c.124	p.G42R	0.001	NULL	NULL	-	no_errors	CFB	HGNC	ENSG00000243649	73	0	0	49	15	23.44	-	-	-	A	31914322	G	A	31914322	3	1	281	1	0	0	0	0	1	0	0	0	3307	1103	39	1	243	1	CFB	6	31914322	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	184061	31914322	139200745	425	31689										
DOM3Z	0	genome.wustl.edu	37	chr6	31938177	31938177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgagggaagagacaaaaccGtctgggttacggaagccagc	14	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	31938177	31938177	G	A	SNP	DOM3Z	ENST00000337523	human	ensembl	69_37n	-1	known	silent	c.891	p.D297	0.866	pfam_RAI1	pfam_RAI1	-	no_errors	DOM3Z	HGNC	ENSG00000204348	82	0	0	49	6	10.91	-	-	-	A	31938177	G	A	31938177	2	1	281	1	0	0	0	0	0	0	0	1	4740	1136	40	1		1	DOM3Z	6	31938177	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	23855	31938177	139176890	426	31690										
STK19	0	genome.wustl.edu	37	chr6	31948532	31948532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtcgtggtgcggcttggcCtcacctaccatgtgcacgac	12	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	31948532	31948532	C	A	SNP	STK19	ENST00000375333	human	ensembl	69_37n	1	known	missense	c.1015	p.L339I	0.993	pfam_Ser/Thr_kinase_19	pfam_Ser/Thr_kinase_19	-	no_errors	STK19	HGNC	ENSG00000204344	56	0	0	49	15	23.44	-	-	-	A	31948532	C	A	31948532	3	1	281	1	0	0	0	0	1	0	0	0	15383	681	24	4	1041	4	STK19	6	31948532	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	10355	31948532	139166535	427	31691										
NOTCH4	0	genome.wustl.edu	37	chr6	32166263	32166263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggaggagttagcatggctGcctgagggagcgccccacag	18	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	32166263	32166263	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.4691	p.A1564V	0.312	pirsf_Notch	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	68	0	0	31	9	22.5	-	-	-	A	32166263	G	A	32166263	3	1	281	1	0	0	0	0	1	0	0	0	10623	1319	46	4	1340	4	NOTCH4	6	32166263	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	217731	32166263	138948804	428	31692										
NOTCH4	0	genome.wustl.edu	37	chr6	32189025	32189025	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggcagtggcactggatctGggggtatgtggccagacaca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	32189025	32189025	G	-	DEL	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	frame_shift_del	c.529	p.Q177fs	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	162	0	0	125	21	14.19	-	-	-	-	32189025	G	-	32189025	7	5	281	1	0	1	0	1	0	0	0	0	10623	1357	47	0	5590	0	NOTCH4	6	32189025	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	22762	32189025	138926042	429	31693										
IP6K3	0	genome.wustl.edu	37	chr6	33694514	33694514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatggcaaggatacgatgccGcttgttctctgggtactcgg	14	9	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	33694514	33694514	G	A	SNP	IP6K3	ENST00000293756	human	ensembl	69_37n	-1	known	missense	c.583	p.R195W	0.200	NULL	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896	39	0	0	28	6	17.65	-	-	-	A	33694514	G	A	33694514	3	1	281	1	0	0	0	0	1	0	0	0	7844	1086	38	1	661	1	IP6K3	6	33694514	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1505489	33694514	137420553	430	31694										
DEF6	0	genome.wustl.edu	37	chr6	35287432	35287432	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caactagaggtgaaagctcgGcgagatgaagaatctgtgcg	14	7	1	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	35287432	35287432	G	A	SNP	DEF6	ENST00000316637	human	ensembl	69_37n	1	known	silent	c.1347	p.R449	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892	49	0	0	28	12	30	-	-	-	A	35287432	G	A	35287432	2	1	281	1	0	0	0	0	0	0	0	1	4417	1190	42	4		4	DEF6	6	35287432	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1592918	35287432	135827635	431	31695										
FKBP5	0	genome.wustl.edu	37	chr6	35558935	35558935	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctcttaagtgtaacttcaTatataagctcagcattaggt	7	7	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	35558935	35558935	T	C	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	missense	c.728	p.Y243C	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	108	0	0	113	29	20.42	-	-	-	C	35558935	T	C	35558935	3	2	281	1	0	0	0	0	1	0	0	0	5957	1406	49	5	723	5	FKBP5	6	35558935	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	271503	35558935	135556132	432	31696										
TBC1D22B	0	genome.wustl.edu	37	chr6	37281638	37281638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatccagaagaaggtgaaggCactggaagagcttgtcagcc	13	8	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	37281638	37281638	C	T	SNP	TBC1D22B	ENST00000373491	human	ensembl	69_37n	1	known	missense	c.1136	p.A379V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	170	0	0	166	22	11.7	-	-	-	T	37281638	C	T	37281638	3	4	281	1	0	0	0	0	1	0	0	0	15704	710	25	4	1174	4	TBC1D22B	6	37281638	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1722703	37281638	133833429	433	31697										
FTSJD2	0	genome.wustl.edu	37	chr6	37427435	37427435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggataacacagatcgcaaggGtgtccattttctgatggctg	12	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	37427435	37427435	G	A	SNP	FTSJD2	ENST00000373451	human	ensembl	69_37n	1	known	missense	c.1070	p.G357D	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_Rsp5_WWP,pfscan_G_patch_dom	-	no_errors	FTSJD2	HGNC	ENSG00000137200	599	0	0	544	129	19.14	-	-	-	A	37427435	G	A	37427435	3	1	281	1	0	0	0	0	1	0	0	0	6140	1261	44	4	1104	4	FTSJD2	6	37427435	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	145797	37427435	133687632	434	31698										
DNAH8	0	genome.wustl.edu	37	chr6	38816439	38816440	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttagatacaatgctccatttINSaaaaaaaatatccagaattg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	38816439	38816440	-	A	INS	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	frame_shift_ins	c.4410_4411	p.N1472fs	1.000:1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	68	0	0	56	9	13.85	-	-	-	A	38816440	-	A	38816439	7	5	281	1	0	1	1	0	0	0	0	0	4642	1751	61	0	4540	0	DNAH8	6	38816439	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1389004	38816439	132298628	435	31699										
KCNK16	0	genome.wustl.edu	37	chr6	39286910	39286910	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acccaggcttccatgatgacCtgtagggggtggcatggcag	15	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	39286910	39286910	C	A	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	splice_site	c.214-1	e2-1	1.000	-	-	-	no_errors	KCNK16	HGNC	ENSG00000095981	63	0	0	37	8	17.78	-	-	-	A	39286910	C	A	39286910	5	1	281	1	0	0	0	0	0	0	1	0	8117	695	24	4	1121	4	KCNK16	6	39286910	Splice_Site	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	470471	39286910	131828157	436	31700										
USP49	0	genome.wustl.edu	37	chr6	41767668	41767668	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggtttgggattggattttcGtcgtttgcctatgtggtttg	15	4	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	41767668	41767668	G	A	SNP	USP49	ENST00000373009	human	ensembl	69_37n	-1	known	nonsense	c.1570	p.R524*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP49	HGNC	ENSG00000164663	112	0	0	60	11	15.49	-	-	-	A	41767668	G	A	41767668	4	1	281	1	0	0	0	0	0	1	0	0	17177	1153	40	1	360	1	USP49	6	41767668	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2480758	41767668	129347399	437	31701										
KIAA0240	0	genome.wustl.edu	37	chr6	42832553	42832553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgagccaaaaccggtgtgaCggaacccatgaatcatgacc	10	13	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	42832553	42832553	C	T	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	missense	c.2609	p.T870M	0.904	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	106	0	0	99	19	16.1	-	-	-	T	42832553	C	T	42832553	3	4	281	1	0	0	0	0	1	0	0	0	8216	536	19	1	2651	1	KIAA0240	6	42832553	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1064885	42832553	128282514	438	31702										
KLHDC3	0	genome.wustl.edu	37	chr6	42984952	42984952	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgttacggtggacagtgcacCtggagggcgggccccgcagg	18	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	42984952	42984952	C	A	SNP	KLHDC3	ENST00000326974	human	ensembl	69_37n	1	known	missense	c.22	p.L8M	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702	21	0	0	15	5	25	-	-	-	A	42984952	C	A	42984952	3	1	281	1	0	0	0	0	1	0	0	0	8410	680	24	4	24	4	KLHDC3	6	42984952	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	152399	42984952	128130115	439	31703										
TJAP1	0	genome.wustl.edu	37	chr6	43472634	43472634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgcccgagtgttagagaagCcggagtctctactgctcaat	11	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	43472634	43472634	C	T	SNP	TJAP1	ENST00000372445	human	ensembl	69_37n	1	known	missense	c.715	p.P239S	1.000	NULL	NULL	-	no_errors	TJAP1	HGNC	ENSG00000137221	110	0	0	68	8	10.53	-	-	-	T	43472634	C	T	43472634	3	4	281	1	0	0	0	0	1	0	0	0	16023	739	26	4	745	4	TJAP1	6	43472634	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	487682	43472634	127642433	440	31704										
CDC5L	0	genome.wustl.edu	37	chr6	44360566	44360569	+	Splice_Site	DEL	GTAA	GTAA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaacactatgaatttcttctGtaagtgagtcttcagaaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	44360566	44360569	GTAA	-	DEL	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	splice_site_del	c.311+1_311+1	e3+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	CDC5L	HGNC	ENSG00000096401	122	0	0	110	44	28.39	-	-	-	-	44360569	GTAA	-	44360566	8	5	281	1	0	1	0	1	0	0	1	0	3111	1391	48	0	322	0	CDC5L	6	44360566	Splice_Site	DEL	GTAA	TCGA-AN-A0AK-01A-21W-A019-09	887932	44360566	126754501	441	31705										
TDRD6	0	genome.wustl.edu	37	chr6	46658264	46658265	+	Frame_Shift_Del	DEL	CT	CT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaacatacaaggacttaaaaCtctaatgtctgatattcagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	46658264	46658265	CT	-	DEL	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	frame_shift_del	c.2399_2400	p.L801fs	0.000:0.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	112	0	0	72	15	17.05	-	-	-	-	46658265	CT	-	46658264	7	5	281	1	0	1	0	1	0	0	0	0	15829	565	20	0	2401	0	TDRD6	6	46658264	Frame_Shift_Del	DEL	CT	TCGA-AN-A0AK-01A-21W-A019-09	2297698	46658264	124456803	442	31706										
PKHD1	0	genome.wustl.edu	37	chr6	51777166	51777167	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagctgacactcagtacctcINSaaaggtgacttaagatagag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	51777166	51777167	-	A	INS	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6330_6329	p.L2110fs	1.000:1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	198	0	0	177	29	14.08	-	-	-	A	51777167	-	A	51777166	7	5	281	1	0	1	1	0	0	0	0	0	12045	825	29	0	6053	0	PKHD1	6	51777166	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5118902	51777166	119337901	443	31707										
KLHL31	0	genome.wustl.edu	37	chr6	53519885	53519885	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctgccgcattttacttaaAccttccaagaggttggggcc	9	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	53519885	53519885	A	G	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	silent	c.186	p.G62	0.012	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	71	0	0	40	22	35.48	-	-	-	G	53519885	A	G	53519885	2	3	281	1	0	0	0	0	0	0	0	1	8438	30	2	5		5	KLHL31	6	53519885	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1742719	53519885	117595182	444	31708										
KIAA1586	0	genome.wustl.edu	37	chr6	56918118	56918118	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggggcaagagaattacaggAaaaaaatggagaggtaaatt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	56918118	56918118	A	-	DEL	KIAA1586	ENST00000370733	human	ensembl	69_37n	1	known	frame_shift_del	c.821	p.N276fs	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116	124	0	0	112	21	15.56	-	-	-	-	56918118	A	-	56918118	7	5	281	1	0	1	0	1	0	0	0	0	8297	246	9	0	835	0	KIAA1586	6	56918118	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	3398233	56918118	114196949	445	31709										
LGSN	0	genome.wustl.edu	37	chr6	63990607	63990607	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgacacctgttctgagggtAaatgcattatcagctgagct	10	8	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	63990607	63990607	A	G	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	silent	c.849	p.F283	0.994	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	87	0	0	82	14	14.58	-	-	-	G	63990607	A	G	63990607	2	3	281	1	0	0	0	0	0	0	0	1	8814	359	13	5		5	LGSN	6	63990607	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	7072489	63990607	107124460	446	31710										
COL19A1	0	genome.wustl.edu	37	chr6	70897842	70897842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggaaaaccaggccttacaGgcatgaagggggccatcggt	16	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	70897842	70897842	G	T	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.2920	p.G974C	1.000	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	159	0	0	116	34	22.67	-	-	-	T	70897842	G	T	70897842	3	4	281	1	0	0	0	0	1	0	0	0	3706	1000	35	4	3102	4	COL19A1	6	70897842	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6907235	70897842	100217225	447	31711										
COL19A1	0	genome.wustl.edu	37	chr6	70916894	70916894	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtgccccaggcccacagggCcccccaggacccagtggaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	70916894	70916894	C	-	DEL	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	frame_shift_del	c.3345	p.P1117fs	0.958	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	210	0	0	200	31	13.25	-	-	-	-	70916894	C	-	70916894	7	5	281	1	0	1	0	1	0	0	0	0	3706	726	26	0	3543	0	COL19A1	6	70916894	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	19052	70916894	100198173	448	31712										
FAM135A	0	genome.wustl.edu	37	chr6	71235047	71235047	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagtaagtggagatacaattAagttaccagatattagtgcc	9	5	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	71235047	71235047	A	G	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	missense	c.2260	p.K754E	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	287	0	0	201	124	38.15	-	-	-	G	71235047	A	G	71235047	3	3	281	1	0	0	0	0	1	0	0	0	5488	363	13	5	2388	5	FAM135A	6	71235047	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	318153	71235047	99880020	449	31713										
HTR1B	0	genome.wustl.edu	37	chr6	78172609	78172609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggagaagacccacaccagcGcgatcatgaccgccgccctc	10	17	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	78172609	78172609	G	A	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	missense	c.512	p.A171V	0.951	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	44	0	0	18	8	30.77	-	-	-	A	78172609	G	A	78172609	3	1	281	1	0	0	0	0	1	0	0	0	7491	1087	38	1	664	1	HTR1B	6	78172609	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6937562	78172609	92942458	450	31714										
ELOVL4	0	genome.wustl.edu	37	chr6	80636019	80636019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atccattttggacccagccaCacaaacaggagataaagagt	8	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	80636019	80636019	C	T	SNP	ELOVL4	ENST00000369816	human	ensembl	69_37n	-1	known	silent	c.180	p.V60	0.997	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402	81	0	0	73	21	22.34	-	-	-	T	80636019	C	T	80636019	2	4	281	1	0	0	0	0	0	0	0	1	5113	465	17	4		4	ELOVL4	6	80636019	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2463410	80636019	90479048	451	31715										
IBTK	0	genome.wustl.edu	37	chr6	82933863	82933863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgaaacctgcctgctgcaaCgccaatgattgtccttcctt	7	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	82933863	82933863	C	T	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.865	p.V289I	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	172	0	0	132	63	32.31	-	-	-	T	82933863	C	T	82933863	3	4	281	1	0	0	0	0	1	0	0	0	7530	536	19	1	3288	1	IBTK	6	82933863	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2297844	82933863	88181204	452	31716										
SYNCRIP	0	genome.wustl.edu	37	chr6	86324791	86324791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtgaataaccggctctacCgcggggaggagcagccccac	13	14	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	86324791	86324791	C	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	missense	c.1555	p.G519S	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	220	0	0	189	52	21.58	-	-	-	T	86324791	C	T	86324791	3	4	281	1	0	0	0	0	1	0	0	0	15536	652	23	1	366	1	SYNCRIP	6	86324791	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3390928	86324791	84790276	453	31717										
SYNCRIP	0	genome.wustl.edu	37	chr6	86332354	86332354	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagaaagcaaaagcctctgTtttttttcttgtcatccggt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	86332354	86332354	T	-	DEL	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	frame_shift_del	c.854	p.N285fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	275	1	0.36	239	125	34.06	-	-	-	-	86332354	T	-	86332354	7	5	281	1	0	1	0	1	0	0	0	0	15536	1725	60	0	1079	0	SYNCRIP	6	86332354	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	7563	86332354	84782713	454	31718										
C6orf165	0	genome.wustl.edu	37	chr6	88144700	88144700	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acatagttagagaaaaggccAaaaaaaatacagagttaatt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	88144700	88144700	A	-	DEL	C6orf165	ENST00000369562	human	ensembl	69_37n	1	known	frame_shift_del	c.1423	p.N477fs	1.000	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6orf165	HGNC	ENSG00000213204	106	0	0	82	37	29.6	-	-	-	-	88144700	A	-	88144700	7	5	281	1	0	1	0	1	0	0	0	0	2362	131	5	0	1461	0	C6orf165	6	88144700	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1812346	88144700	82970367	455	31719										
MDN1	0	genome.wustl.edu	37	chr6	90374212	90374212	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agataatctgaaaccttgttCttcaagctccccatcatgca	5	12	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	90374212	90374212	C	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	nonsense	c.14230	p.E4744*	1.000	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	189	0	0	191	41	17.67	-	-	-	A	90374212	C	A	90374212	4	1	281	1	0	0	0	0	0	1	0	0	9486	922	32	2	2632	2	MDN1	6	90374212	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2229512	90374212	80740855	456	31720										
CASP8AP2	0	genome.wustl.edu	37	chr6	90578727	90578727	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attaaggattcatcagcagcActtgccacttctacaagtct	6	11	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	90578727	90578727	A	G	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	34	0	0	23	12	34.29	-	-	-	G	90578727	A	G	90578727	1	3	281	0	1	0	0	0	0	0	0	0	2703	146	6	5		5	CASP8AP2	6	90578727	RNA	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	204515	90578727	80536340	457	31721										
EPHA7	0	genome.wustl.edu	37	chr6	93967995	93967995	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggccactgcagacttcaccGaattctcctgaagtaacaga	8	13	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	93967995	93967995	G	A	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	silent	c.1932	p.F644	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	91	0	0	69	33	32.35	-	-	-	A	93967995	G	A	93967995	2	1	281	1	0	0	0	0	0	0	0	1	5209	1049	37	1		1	EPHA7	6	93967995	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3389268	93967995	77147072	458	31722										
PRDM13	0	genome.wustl.edu	37	chr6	100060928	100060928	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggaggagcgctacatctgCtggtactgctggaggacgtt	17	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	100060928	100060928	C	T	SNP	PRDM13	ENST00000369214	human	ensembl	69_37n	1	known	silent	c.447	p.C149	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238	17	0	0	6	5	45.45	-	-	-	T	100060928	C	T	100060928	2	4	281	1	0	0	0	0	0	0	0	1	12535	805	28	4		4	PRDM13	6	100060928	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6092933	100060928	71054139	459	31723										
PDSS2	0	genome.wustl.edu	37	chr6	107595417	107595417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaattagctccgtgatctctGccaaacttctttgactaaaa	6	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	107595417	107595417	G	A	SNP	PDSS2	ENST00000369037	human	ensembl	69_37n	-1	known	missense	c.446	p.A149V	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS2	HGNC	ENSG00000164494	74	0	0	69	45	39.47	-	-	-	A	107595417	G	A	107595417	3	1	281	1	0	0	0	0	1	0	0	0	11767	1319	46	4	777	4	PDSS2	6	107595417	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	7534489	107595417	63519650	460	31724										
SEC63	0	genome.wustl.edu	37	chr6	108204320	108204322	+	In_Frame_Del	DEL	CTT	CTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcactgcccttatctgaaaCttcttcttcatcttccttta							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	108204320	108204322	CTT	-	DEL	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	in_frame_del	c.1705_1703	p.E568in_frame_del	0.088:0.109:0.996	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	85	0	0	99	21	17.5	-	-	-	-	108204322	CTT	-	108204320	7	5	281	1	0	1	0	1	0	0	0	0	14093	565	20	0	597	0	SEC63	6	108204320	In_Frame_Del	DEL	CTT	TCGA-AN-A0AK-01A-21W-A019-09	608903	108204320	62910747	461	31725										
SNX3	0	genome.wustl.edu	37	chr6	108544180	108544180	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctctttctaattcacttcGcagccattcaaagtcactgt	4	13	5	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	108544180	108544180	G	A	SNP	SNX3	ENST00000230085	human	ensembl	69_37n	-1	known	nonsense	c.232	p.R78*	0.531	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX3	HGNC	ENSG00000112335	58	0	0	54	13	19.4	-	-	-	A	108544180	G	A	108544180	4	1	281	1	0	0	0	0	0	1	0	0	14988	1095	38	1	268	1	SNX3	6	108544180	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	339860	108544180	62570887	462	31726										
FAM26E	0	genome.wustl.edu	37	chr6	116836954	116836954	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcgagaggaacctgaaatgTttttttgaaaacaagaggcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	116836954	116836954	T	-	DEL	FAM26E	ENST00000368599	human	ensembl	69_37n	1	known	frame_shift_del	c.732	p.F246fs	1.000	NULL	NULL	-	no_errors	FAM26E	HGNC	ENSG00000178033	259	1	0.38	220	38	14.67	-	-	-	-	116836954	T	-	116836954	7	5	281	1	0	1	0	1	0	0	0	0	5596	1731	60	0	738	0	FAM26E	6	116836954	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	8292774	116836954	54278113	463	31727										
RSPH4A	0	genome.wustl.edu	37	chr6	116953503	116953503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaatggatgatcctagtgtgGaggaggagcaggctttcagg	16	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	116953503	116953503	G	A	SNP	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	missense	c.2050	p.E684K	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	96	0	0	93	19	16.96	-	-	-	A	116953503	G	A	116953503	3	1	281	1	0	0	0	0	1	0	0	0	13792	1175	41	2	2072	2	RSPH4A	6	116953503	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	116549	116953503	54161564	464	31728										
ROS1	0	genome.wustl.edu	37	chr6	117706915	117706915	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctaaagcccctgctcctgcAatgctgggtaggtgataatt	11	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	117706915	117706915	A	G	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	silent	c.2235	p.I745	0.989	smart_LDLR_classB_rpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	160	0	0	104	24	18.75	-	-	-	G	117706915	A	G	117706915	2	3	281	1	0	0	0	0	0	0	0	1	13617	126	5	5		5	ROS1	6	117706915	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	753412	117706915	53408152	465	31729										
ROS1	0	genome.wustl.edu	37	chr6	117710573	117710573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcctggtgagagccaaacaGcaccgaaagctcctgcgggc	13	13	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	117710573	117710573	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	silent	c.1699	p.L567	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	112	0	0	106	23	17.83	-	-	-	A	117710573	G	A	117710573	2	1	281	1	0	0	0	0	0	0	0	1	13617	962	34	4		4	ROS1	6	117710573	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3658	117710573	53404494	466	31730										
DCBLD1	0	genome.wustl.edu	37	chr6	117840981	117840981	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtgtgctttgtttttaggtCcatactgtggaagtatgact	11	5	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	117840981	117840981	C	A	SNP	DCBLD1	ENST00000338728	human	ensembl	69_37n	1	known	missense	c.328	p.P110T	0.997	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465	63	0	0	35	26	42.62	-	-	-	A	117840981	C	A	117840981	3	1	281	1	0	0	0	0	1	0	0	0	4311	855	30	2	338	2	DCBLD1	6	117840981	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	130408	117840981	53274086	467	31731										
SERINC1	0	genome.wustl.edu	37	chr6	122777722	122777722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagccaaaccaaagcacaaaCgatatacagctttatagcca	5	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	122777722	122777722	C	T	SNP	SERINC1	ENST00000339697	human	ensembl	69_37n	-1	known	missense	c.275	p.R92H	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897	163	0	0	170	33	16.26	-	-	-	T	122777722	C	T	122777722	3	4	281	1	0	0	0	0	1	0	0	0	14167	536	19	1	1118	1	SERINC1	6	122777722	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4936741	122777722	48337345	468	31732										
SMPDL3A	0	genome.wustl.edu	37	chr6	123124876	123124876	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcagtctaaacacaaacttGtactacggcccaaatataat	4	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	123124876	123124876	G	A	SNP	SMPDL3A	ENST00000368440	human	ensembl	69_37n	1	known	silent	c.636	p.L212	0.994	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3A	HGNC	ENSG00000172594	204	0	0	208	54	20.61	-	-	-	A	123124876	G	A	123124876	2	1	281	1	0	0	0	0	0	0	0	1	14897	1368	48	4		4	SMPDL3A	6	123124876	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	347154	123124876	47990191	469	31733										
ARHGAP18	0	genome.wustl.edu	37	chr6	129950558	129950558	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccttggagctctctttctgAttgagtgcttgctcggcaaa	10	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	129950558	129950558	A	G	SNP	ARHGAP18	ENST00000275189	human	ensembl	69_37n	-1	known	silent	c.726	p.N242	0.969	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	135	0	0	135	23	14.56	-	-	-	G	129950558	A	G	129950558	2	3	281	1	0	0	0	0	0	0	0	1	870	330	12	5		5	ARHGAP18	6	129950558	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6825682	129950558	41164509	470	31734										
L3MBTL3	0	genome.wustl.edu	37	chr6	130399761	130399761	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtgtaaggaacatagaagaAcccttattactccaccaggt	9	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	130399761	130399761	A	C	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.1303	p.T435P	0.220	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	206	0	0	178	27	13.17	-	-	-	C	130399761	A	C	130399761	3	2	281	1	0	0	0	0	1	0	0	0	8647	43	2	5	1349	5	L3MBTL3	6	130399761	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	449203	130399761	40715306	471	31735										
TAAR2	0	genome.wustl.edu	37	chr6	132938709	132938709	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagaaacctgccataaacaaGgtggtcccccatagcttgtt	8	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	132938709	132938709	G	T	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	silent	c.636	p.T212	0.875	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	254	0	0	192	38	16.52	-	-	-	T	132938709	G	T	132938709	2	4	281	1	0	0	0	0	0	0	0	1	15582	987	35	4		4	TAAR2	6	132938709	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2538948	132938709	38176358	472	31736										
AHI1	0	genome.wustl.edu	37	chr6	135776913	135776913	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggactctcatcagagcctcGaagcaaatagggaaaatttt	9	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	135776913	135776913	G	A	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	nonsense	c.1303	p.R435*	1.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	16	0	0	16	5	23.81	-	-	-	A	135776913	G	A	135776913	4	1	281	1	0	0	0	0	0	1	0	0	413	1066	37	1	2424	1	AHI1	6	135776913	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2838204	135776913	35338154	473	31737										
GPR126	0	genome.wustl.edu	37	chr6	142691311	142691311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttatgttttgtcctagttgcCgtgtccttaaggaatcaaaa	8	7	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	142691311	142691311	C	T	SNP	GPR126	ENST00000367609	human	ensembl	69_37n	1	known	silent	c.450	p.A150	0.574	superfamily_CUB,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_CUB,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Pentaxin,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	92	0	0	91	24	20.87	-	-	-	T	142691311	C	T	142691311	2	4	281	1	0	0	0	0	0	0	0	1	6690	639	23	1		1	GPR126	6	142691311	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6914398	142691311	28423756	474	31738										
PEX3	0	genome.wustl.edu	37	chr6	143789300	143789300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgggaggatctgaagataaTaagtaagcctgcatattctg	11	5	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	143789300	143789300	T	C	SNP	PEX3	ENST00000367591	human	ensembl	69_37n	1	known	missense	c.329	p.I110T	1.000	pfam_Peroxin-3	pfam_Peroxin-3	-	no_errors	PEX3	HGNC	ENSG00000034693	63	0	0	51	34	40	-	-	-	C	143789300	T	C	143789300	3	2	281	1	0	0	0	0	1	0	0	0	11821	1406	49	5	343	5	PEX3	6	143789300	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1097989	143789300	27325767	475	31739										
UTRN	0	genome.wustl.edu	37	chr6	144780370	144780370	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaatggctcgtgcaagctgcTcggccctgatgtctcagcct	11	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	144780370	144780370	T	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.2587	p.S863P	0.070	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	112	0	0	79	17	17.71	-	-	-	C	144780370	T	C	144780370	3	2	281	1	0	0	0	0	1	0	0	0	17200	1551	54	5	2665	5	UTRN	6	144780370	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	991070	144780370	26334697	476	31740										
PLEKHG1	0	genome.wustl.edu	37	chr6	151161918	151161918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccatatctgacaccatataaTgattctgacaaactgaatga	5	9	2	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	151161918	151161918	T	C	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	silent	c.4044	p.N1348	0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	223	0	0	163	38	18.91	-	-	-	C	151161918	T	C	151161918	2	2	281	1	0	0	0	0	0	0	0	1	12142	1461	51	5		5	PLEKHG1	6	151161918	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	6381548	151161918	19953149	477	31741										
NOX3	0	genome.wustl.edu	37	chr6	155764536	155764536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgttccaggttgaagaaatgCgccacgatgtggatggctag	14	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	155764536	155764536	C	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.357	p.A119	0.015	pfam_Fe3_Rdtase_TM_dom,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	71	0	0	49	25	33.78	-	-	-	T	155764536	C	T	155764536	2	4	281	1	0	0	0	0	0	0	0	1	10629	755	27	1		1	NOX3	6	155764536	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4602618	155764536	15350531	478	31742										
TULP4	0	genome.wustl.edu	37	chr6	158900957	158900957	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgtcagcaagctgactctgCccccccgcctctgctcctac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	158900957	158900957	C	-	DEL	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	frame_shift_del	c.1201	p.R403fs	1.000	pfam_SOCS_C,superfamily_Tumour_necrosis_fac-like,smart_SOCS_C,pfscan_SOCS_C	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	81	0	0	94	16	13.68	-	-	-	-	158900957	C	-	158900957	7	5	281	1	0	1	0	1	0	0	0	0	16873	739	26	0	1227	0	TULP4	6	158900957	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	3136421	158900957	12214110	479	31743										
TULP4	0	genome.wustl.edu	37	chr6	158924637	158924637	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atggtagagactgcagacaaCttccaggaagtcctctccct	9	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	158924637	158924637	C	T	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.3942	p.N1314	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	69	0	0	30	8	21.05	-	-	-	T	158924637	C	T	158924637	2	4	281	1	0	0	0	0	0	0	0	1	16873	564	20	4		4	TULP4	6	158924637	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	23680	158924637	12190430	480	31744										
FNDC1	0	genome.wustl.edu	37	chr6	159653843	159653843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtccaccatgtcctcctccGtctcttctcatctctcgtcc	5	19	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	159653843	159653843	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.2299	p.V767I	0.048	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	50	0	0	24	9	27.27	-	-	-	A	159653843	G	A	159653843	3	1	281	1	0	0	0	0	1	0	0	0	6014	1145	40	1	2341	1	FNDC1	6	159653843	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	729206	159653843	11461224	481	31745										
LPA	0	genome.wustl.edu	37	chr6	161021955	161021956	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacaacttcttaccttgttcINSaaaaaaagcctctaggcttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	161021955	161021956	-	A	INS	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3121_3120	p.E1040fs	0.007:0.002	NULL	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	159	1	0.62	127	21	14.19	-	-	-	A	161021956	-	A	161021955	7	5	281	1	0	1	1	0	0	0	0	0	8969	835	29	0	3085	0	LPA	6	161021955	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1368112	161021955	10093112	482	31746										
LPA	0	genome.wustl.edu	37	chr6	161056206	161056206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggggtaacagtcggaggcgCgacggcagtcccttctgcgt	16	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	161056206	161056206	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.1024	p.A342T	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	220	0	0	182	29	13.74	-	-	-	T	161056206	C	T	161056206	3	4	281	1	0	0	0	0	1	0	0	0	8969	768	27	1	5230	1	LPA	6	161056206	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	34251	161056206	10058861	483	31747										
PLG	0	genome.wustl.edu	37	chr6	161152104	161152104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcctgacaatgaactactgCaggaatccagatgccgataa	10	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	161152104	161152104	C	T	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	silent	c.1278	p.C426	1.000	pirsf_Pept_S1A_plasmin,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	216	0	0	182	31	14.55	-	-	-	T	161152104	C	T	161152104	2	4	281	1	0	0	0	0	0	0	0	1	12160	718	25	4		4	PLG	6	161152104	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	95898	161152104	9962963	484	31748										
MAP3K4	0	genome.wustl.edu	37	chr6	161528958	161528958	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagtatgggaaggtgtacaCctgcatcagcgtcgacaccg	12	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	161528958	161528958	C	G	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	missense	c.4076	p.T1359S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	46	0	0	57	7	10.77	-	-	-	G	161528958	C	G	161528958	3	3	281	1	0	0	0	0	1	0	0	0	9323	507	18	4	4158	4	MAP3K4	6	161528958	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	376854	161528958	9586109	485	31749										
QKI	0	genome.wustl.edu	37	chr6	163984583	163984583	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaccataatgcctttgatcAgacaaatacagaccgctgtc	6	12	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	6	163984583	163984583	A	G	SNP	QKI	ENST00000361752	human	ensembl	69_37n	1	known	missense	c.766	p.R256G	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531	141	0	0	108	53	32.92	-	-	-	G	163984583	A	G	163984583	3	3	281	1	0	0	0	0	1	0	0	0	12956	180	7	5	788	5	QKI	6	163984583	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2455625	163984583	7130484	486	31750										
EIF2AK1	0	genome.wustl.edu	37	chr7	6078194	6078194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acccagatggtactcacaggCagactcgtccacatactccc	7	16	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	6078194	6078194	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	missense	c.1228	p.A410T	0.512	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	94	0	0	72	15	17.05	-	-	-	T	6078194	C	T	6078194	3	4	281	1	0	0	0	0	1	0	0	0	5031	710	25	4	688	4	EIF2AK1	7	6078194	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		6078194	153060469	487	31751										
TAX1BP1	0	genome.wustl.edu	37	chr7	27827107	27827107	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagactttaaaaaatttagAtgggaacaaagaaagcgtga	9	5	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	27827107	27827107	A	T	SNP	TAX1BP1	ENST00000396319	human	ensembl	69_37n	1	known	missense	c.923	p.D308V	1.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	126	0	0	109	15	12.1	-	-	-	T	27827107	A	T	27827107	3	4	281	1	0	0	0	0	1	0	0	0	15686	333	12	5	949	5	TAX1BP1	7	27827107	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	21748913	27827107	131311556	488	31752										
KBTBD2	0	genome.wustl.edu	37	chr7	32910447	32910447	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacacaattctctgcatttaTttttttaattaaatattctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	32910447	32910447	T	-	DEL	KBTBD2	ENST00000304056	human	ensembl	69_37n	-1	known	frame_shift_del	c.382	p.I128fs	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852	68	0	0	27	35	54.69	-	-	-	-	32910447	T	-	32910447	7	5	281	1	0	1	0	1	0	0	0	0	8047	1493	52	0	1493	0	KBTBD2	7	32910447	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	5083340	32910447	126228216	489	31753										
RALA	0	genome.wustl.edu	37	chr7	39730108	39730108	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctacgctgcaattagagacaActacttccgaagtggggagg	12	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	39730108	39730108	A	G	SNP	RALA	ENST00000005257	human	ensembl	69_37n	1	known	missense	c.242	p.N81S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALA	HGNC	ENSG00000006451	93	0	0	55	54	49.54	-	-	-	G	39730108	A	G	39730108	3	3	281	1	0	0	0	0	1	0	0	0	13093	43	2	5	248	5	RALA	7	39730108	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6819661	39730108	119408555	490	31754										
TNS3	0	genome.wustl.edu	37	chr7	47408022	47408022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggcagcctgctgcttgcccGgagcccacctcccacgctgt	11	18	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	47408022	47408022	G	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.2221	p.R741W	0.004	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	77	0	0	44	16	26.67	-	-	-	A	47408022	G	A	47408022	3	1	281	1	0	0	0	0	1	0	0	0	16439	1115	39	1	2176	1	TNS3	7	47408022	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	7677914	47408022	111730641	491	31755										
PKD1L1	0	genome.wustl.edu	37	chr7	47955186	47955186	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aactgaaaatgtaaaagatgAaaaaaaatacctataaaagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	47955186	47955186	A	-	DEL	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	frame_shift_del	c.1071	p.H358fs	0.006	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	136	0	0	108	20	15.5	-	-	-	-	47955186	A	-	47955186	7	5	281	1	0	1	0	1	0	0	0	0	12038	243	9	0	7678	0	PKD1L1	7	47955186	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	547164	47955186	111183477	492	31756										
EGFR	0	genome.wustl.edu	37	chr7	55220348	55220348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcacaggcccccgggagagCgactgcctggtaagatgccc	14	14	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	55220348	55220348	C	T	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	silent	c.738	p.S246	0.745	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	58	0	0	38	15	28.3	-	-	-	T	55220348	C	T	55220348	2	4	281	1	0	0	0	0	0	0	0	1	5002	767	27	1		1	EGFR	7	55220348	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7265162	55220348	103918315	493	31757										
CCT6A	0	genome.wustl.edu	37	chr7	56128011	56128011	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtaacaaccctcgttctgTcacattattgatcaaaggac	6	10	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	56128011	56128011	T	C	SNP	CCT6A	ENST00000275603	human	ensembl	69_37n	1	known	missense	c.1115	p.V372A	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731	113	0	0	86	33	27.73	-	-	-	C	56128011	T	C	56128011	3	2	281	1	0	0	0	0	1	0	0	0	2986	1667	58	5	1153	5	CCT6A	7	56128011	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	907663	56128011	103010652	494	31758										
POM121	0	genome.wustl.edu	37	chr7	72412440	72412440	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacccagcctcctacccccGctgggtttatcacagtcagg	8	17	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	72412440	72412440	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	silent	c.1908	p.P636	0.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	23	0	0	14	11	44	-	-	-	A	72412440	G	A	72412440	2	1	281	1	0	0	0	0	0	0	0	1	12313	1074	38	1		1	POM121	7	72412440	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	16284429	72412440	86726223	495	31759										
LIMK1	0	genome.wustl.edu	37	chr7	73535310	73535311	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggattcctggaccgctactgINSccccccaaactgccccccga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	73535310	73535311	-	C	INS	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	frame_shift_ins	c.1712_1713	p.N574fs	1.000:0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	127	1	0.78	57	16	21.92	-	-	-	C	73535311	-	C	73535310	7	5	281	1	0	1	1	0	0	0	0	0	8856	1319	46	0	1770	0	LIMK1	7	73535310	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1122870	73535310	85603353	496	31760										
GTF2IRD1	0	genome.wustl.edu	37	chr7	73927243	73927243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgtggtgggcacagagaaGgggagaatgttcctgaatgc	16	5	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	73927243	73927243	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	69_37n	1	known	silent	c.207	p.K69	1.000	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704	58	0	0	24	5	17.24	-	-	-	A	73927243	G	A	73927243	2	1	281	1	0	0	0	0	0	0	0	1	6919	991	35	4		4	GTF2IRD1	7	73927243	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	391933	73927243	85211420	497	31761										
PHTF2	0	genome.wustl.edu	37	chr7	77567268	77567268	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacctcatttcttcaccctgAaaaaaaagttacatgtgtgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	77567268	77567268	A	-	DEL	PHTF2	ENST00000454592	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHTF2	HGNC	ENSG00000006576	21	0	0	13	11	44	-	-	-	-	77567268	A	-	77567268	6	5	281	0	1	1	0	1	0	0	0	0	11937	261	9	0		0	PHTF2	7	77567268	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	3640025	77567268	81571395	498	31762										
CD36	0	genome.wustl.edu	37	chr7	80302117	80302117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cactttacaatttgcaaaacGgctgcaggtcaacctattgg	8	10	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	80302117	80302117	G	A	SNP	CD36	ENST00000309881	human	ensembl	69_37n	1	known	missense	c.1157	p.R386Q	1.000	pfam_CD36,prints_CD36	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	47	0	0	24	34	58.62	-	-	-	A	80302117	G	A	80302117	3	1	281	1	0	0	0	0	1	0	0	0	3036	1116	39	1	1195	1	CD36	7	80302117	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2734849	80302117	78836546	499	31763										
SEMA3C	0	genome.wustl.edu	37	chr7	80427531	80427531	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gataaatgatacacacacacGgctgatcctttgaaaactga	7	9	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	80427531	80427531	G	A	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	silent	c.1062	p.A354	0.828	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	52	0	0	48	12	20	-	-	-	A	80427531	G	A	80427531	2	1	281	1	0	0	0	0	0	0	0	1	14114	1103	39	1		1	SEMA3C	7	80427531	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	125414	80427531	78711132	500	31764										
HGF	0	genome.wustl.edu	37	chr7	81335612	81335612	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtaactaacctggcaagcTtcattaaaaccagatctgat	6	9	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	81335612	81335612	T	G	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.1748	p.K583T	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	104	0	0	87	23	20.91	-	-	-	G	81335612	T	G	81335612	3	3	281	1	0	0	0	0	1	0	0	0	7136	1609	56	5	454	5	HGF	7	81335612	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	908081	81335612	77803051	501	31765										
DBF4	0	genome.wustl.edu	37	chr7	87525812	87525812	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaagagttggtagtggtgcAcaaaaaacaagaagtaagta	11	3	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	87525812	87525812	A	G	SNP	DBF4	ENST00000265728	human	ensembl	69_37n	1	known	silent	c.621	p.A207	0.220	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4	HGNC	ENSG00000006634	32	0	0	15	16	51.61	-	-	-	G	87525812	A	G	87525812	2	3	281	1	0	0	0	0	0	0	0	1	4280	146	6	5		5	DBF4	7	87525812	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6190200	87525812	71612851	502	31766										
KRIT1	0	genome.wustl.edu	37	chr7	91870426	91870426	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaataaaactttctttctcTtttttttctgtccttcaatg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	91870426	91870426	T	-	DEL	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	frame_shift_del	c.143	p.K48fs	0.999	NULL	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	53	0	0	30	6	16.67	-	-	-	-	91870426	T	-	91870426	7	5	281	1	0	1	0	1	0	0	0	0	8498	1609	56	0	2127	0	KRIT1	7	91870426	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	4344614	91870426	67268237	503	31767										
LMTK2	0	genome.wustl.edu	37	chr7	97822930	97822930	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catcccgctcccgagggcacCgcagactcagaaccagccac	9	19	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	97822930	97822930	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	silent	c.3153	p.T1051	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	58	0	0	50	25	33.33	-	-	-	T	97822930	C	T	97822930	2	4	281	1	0	0	0	0	0	0	0	1	8915	639	23	1		1	LMTK2	7	97822930	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5952504	97822930	61315733	504	31768										
MCM7	0	genome.wustl.edu	37	chr7	99690708	99690708	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggacacttcggccccctgaGaccagttcacggacggtggc	13	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	99690708	99690708	G	C	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	silent	c.2007	p.V669	0.957	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	105	0	0	50	17	25.37	-	-	-	C	99690708	G	C	99690708	2	2	281	1	0	0	0	0	0	0	0	1	9463	929	33	2		2	MCM7	7	99690708	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1867778	99690708	59447955	505	31769										
PILRB	0	genome.wustl.edu	37	chr7	99957093	99957093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcagggttgcattggctgtCgctgtgctcaaaactgtcat	11	9	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	99957093	99957093	C	T	SNP	PILRB	ENST00000448382	human	ensembl	69_37n	1	known	missense	c.745	p.R249C	0.000	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716	81	0	0	39	6	13.33	-	-	-	T	99957093	C	T	99957093	3	4	281	1	0	0	0	0	1	0	0	0	12000	884	31	1	598	1	PILRB	7	99957093	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	266385	99957093	59181570	506	31770										
EPHB4	0	genome.wustl.edu	37	chr7	100411556	100411556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttacctgaggcagagaactGcgaccacaatgaccaccagg	10	13	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	100411556	100411556	G	A	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	missense	c.1676	p.A559V	0.995	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	67	0	0	38	13	25.49	-	-	-	A	100411556	G	A	100411556	3	1	281	1	0	0	0	0	1	0	0	0	5214	1319	46	4	1323	4	EPHB4	7	100411556	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	454463	100411556	58727107	507	31771										
NAPEPLD	0	genome.wustl.edu	37	chr7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aataaccagtatctcctgcgAaaaaaaatcgattccaaggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	102760123	102760123	A	-	DEL	NAPEPLD	ENST00000455523	human	ensembl	69_37n	-1	known	frame_shift_del	c.1061	p.F354fs	1.000	NULL	NULL	-	no_errors	NAPEPLD	HGNC	ENSG00000161048	194	0	0	100	59	36.65	-	-	-	-	102760123	A	-	102760123	7	5	281	1	0	1	0	1	0	0	0	0	10235	246	9	0	351	0	NAPEPLD	7	102760123	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2348567	102760123	56378540	508	31772										
RELN	0	genome.wustl.edu	37	chr7	103216114	103216114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaatggaggcacgtttttcTgtgagctgctctcctggatc	11	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	103216114	103216114	T	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4184	p.Q1395R	1.000	superfamily_Growth_fac_rcpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	173	0	0	126	26	17.11	-	-	-	C	103216114	T	C	103216114	3	2	281	1	0	0	0	0	1	0	0	0	13303	1580	55	5	6346	5	RELN	7	103216114	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	455991	103216114	55922549	509	31773										
SRPK2	0	genome.wustl.edu	37	chr7	104809657	104809657	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcccccatccaagctttctAataacatgataccggccatt	5	14	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	104809657	104809657	A	G	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	silent	c.285	p.I95	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	98	0	0	86	20	18.87	-	-	-	G	104809657	A	G	104809657	2	3	281	1	0	0	0	0	0	0	0	1	15251	358	13	5		5	SRPK2	7	104809657	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1593543	104809657	54329006	510	31774										
PRKAR2B	0	genome.wustl.edu	37	chr7	106786880	106786880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagcagctacaatcactgctAcctctcctggtgctctgtgg	10	13	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	106786880	106786880	A	G	SNP	PRKAR2B	ENST00000265717	human	ensembl	69_37n	1	known	missense	c.715	p.T239A	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249	47	0	0	62	12	16.22	-	-	-	G	106786880	A	G	106786880	3	3	281	1	0	0	0	0	1	0	0	0	12587	391	14	5	737	5	PRKAR2B	7	106786880	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1977223	106786880	52351783	511	31775										
GPR22	0	genome.wustl.edu	37	chr7	107115001	107115002	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttaatgatatccatttggaINSttttttcttttttctctttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	107115001	107115002	-	T	INS	GPR22	ENST00000304402	human	ensembl	69_37n	1	known	frame_shift_ins	c.496_497	p.S168fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR22	HGNC	ENSG00000172209	107	0	0	104	18	14.75	-	-	-	T	107115002	-	T	107115001	7	5	281	1	0	1	1	0	0	0	0	0	6732	333	12	0	498	0	GPR22	7	107115001	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	328121	107115001	52023662	512	31776										
GPR22	0	genome.wustl.edu	37	chr7	107115738	107115739	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatagatcctaaaagaaacINSaaaaaaattacctttgaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	107115738	107115739	-	A	INS	GPR22	ENST00000304402	human	ensembl	69_37n	1	known	frame_shift_ins	c.1233_1234	p.I413fs	1.000:1.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR22	HGNC	ENSG00000172209	118	0	0	74	25	25.25	-	-	-	A	107115739	-	A	107115738	7	5	281	1	0	1	1	0	0	0	0	0	6732	477	17	0	1235	0	GPR22	7	107115738	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	737	107115738	52022925	513	31777										
MET	0	genome.wustl.edu	37	chr7	116380065	116380065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttctcctggactcccatcCagtgtctccagaagtgattg	8	12	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	116380065	116380065	C	T	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.1454	p.P485L	0.996	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	391	1	0.25	254	147	36.66	-	-	-	T	116380065	C	T	116380065	3	4	281	1	0	0	0	0	1	0	0	0	9556	594	21	4	1464	4	MET	7	116380065	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	9264327	116380065	42758598	514	31778										
ASZ1	0	genome.wustl.edu	37	chr7	117003766	117003766	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatacttcttcccttaattGtatatgagttggatcatttt	6	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	117003766	117003766	G	A	SNP	ASZ1	ENST00000284629	human	ensembl	69_37n	-1	known	nonsense	c.1312	p.Q438*	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ASZ1	HGNC	ENSG00000154438	102	0	0	73	23	23.96	-	-	-	A	117003766	G	A	117003766	4	1	281	1	0	0	0	0	0	1	0	0	1073	1386	48	4	119	4	ASZ1	7	117003766	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	623701	117003766	42134897	515	31779										
PTPRZ1	0	genome.wustl.edu	37	chr7	121608162	121608162	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acatcattggaaaacacattCattcataacactgggaaaac	5	9	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	121608162	121608162	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	silent	c.282	p.F94	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	148	0	0	145	59	28.92	-	-	-	T	121608162	C	T	121608162	2	4	281	1	0	0	0	0	0	0	0	1	12897	825	29	2		2	PTPRZ1	7	121608162	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4604396	121608162	37530501	516	31780										
ZNF800	0	genome.wustl.edu	37	chr7	127017265	127017265	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccatctggagacttggtggGcagtagaattttttatgggt	13	5	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	127017265	127017265	G	T	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	nonsense	c.276	p.C92*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	192	0	0	142	24	14.46	-	-	-	T	127017265	G	T	127017265	4	4	281	1	0	0	0	0	0	1	0	0	18262	1195	42	4	1730	4	ZNF800	7	127017265	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5409103	127017265	32121398	517	31781										
FLNC	0	genome.wustl.edu	37	chr7	128482402	128482402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcatcatctcctggggaggcGtaaacgtgcccaagagcccc	11	14	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	128482402	128482402	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.2239	p.V747I	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	22	0	0	4	5	55.56	-	-	-	A	128482402	G	A	128482402	3	1	281	1	0	0	0	0	1	0	0	0	5981	1145	40	1	2293	1	FLNC	7	128482402	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1465137	128482402	30656261	518	31782										
TNPO3	0	genome.wustl.edu	37	chr7	128641146	128641146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacgtgccacggccatatgaTaggcagtctccaatgtcagc	10	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	128641146	128641146	T	C	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.839	p.Y280C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	242	0	0	264	34	11.41	-	-	-	C	128641146	T	C	128641146	3	2	281	1	0	0	0	0	1	0	0	0	16432	1406	49	5	2000	5	TNPO3	7	128641146	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	158744	128641146	30497517	519	31783										
PODXL	0	genome.wustl.edu	37	chr7	131195813	131195813	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcacactgtggctgcttttCcccccagagtttgttgtatc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	131195813	131195813	C	-	DEL	PODXL	ENST00000541194	human	ensembl	69_37n	-1	known	frame_shift_del	c.486	p.S164fs	0.000	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	135	0	0	59	35	36.46	-	-	-	-	131195813	C	-	131195813	7	5	281	1	0	1	0	1	0	0	0	0	12254	842	30	0	1228	0	PODXL	7	131195813	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	2554667	131195813	27942850	520	31784										
CNOT4	0	genome.wustl.edu	37	chr7	135100012	135100012	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tattctggtcgttttaaaacCtataaaagaagaagaaataa	6	4	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	135100012	135100012	C	A	SNP	CNOT4	ENST00000541284	human	ensembl	69_37n	-1	known	splice_site	c.373-1	e3-1	1.000	-	-	-	no_errors	CNOT4	HGNC	ENSG00000080802	241	0	0	200	25	11.11	-	-	-	A	135100012	C	A	135100012	5	1	281	1	0	0	0	0	0	0	1	0	3651	695	24	4	1684	4	CNOT4	7	135100012	Splice_Site	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3904199	135100012	24038651	521	31785										
DENND2A	0	genome.wustl.edu	37	chr7	140268612	140268612	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gactcactgttctcatctgtCactagaagaaaagaacaagg	8	9	4	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	140268612	140268612	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	silent	c.1542	p.V514	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	88	0	0	84	18	17.65	-	-	-	T	140268612	C	T	140268612	2	4	281	1	0	0	0	0	0	0	0	1	4465	840	29	2		2	DENND2A	7	140268612	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5168600	140268612	18870051	522	31786										
WEE2	0	genome.wustl.edu	37	chr7	141418904	141418904	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgagaaaccaacatggcttcCcgctatgaaaaagaattctt	7	10	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	141418904	141418904	C	A	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	1	known	silent	c.618	p.S206	1.000	superfamily_Kinase-like_dom,pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	156	0	0	126	56	30.77	-	-	-	A	141418904	C	A	141418904	2	1	281	1	0	0	0	0	0	0	0	1	17442	610	22	4		4	WEE2	7	141418904	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1150292	141418904	17719759	523	31787										
TAS2R3	0	genome.wustl.edu	37	chr7	141464825	141464825	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attctcattctggggaacagTaagctgaagcagacatttgt	10	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	141464825	141464825	T	C	SNP	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	silent	c.867	p.S289	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	324	0	0	216	101	31.86	-	-	-	C	141464825	T	C	141464825	2	2	281	1	0	0	0	0	0	0	0	1	15664	1635	57	5		5	TAS2R3	7	141464825	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	45921	141464825	17673838	524	31788										
EPHB6	0	genome.wustl.edu	37	chr7	142566374	142566374	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accttcctgggccgggccgcAgtgctgggtcagttccagca	14	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	142566374	142566374	A	G	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	silent	c.2163	p.A721	0.001	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	34	0	0	20	12	37.5	-	-	-	G	142566374	A	G	142566374	2	3	281	1	0	0	0	0	0	0	0	1	5215	175	7	5		5	EPHB6	7	142566374	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1101549	142566374	16572289	525	31789										
CNTNAP2	0	genome.wustl.edu	37	chr7	147336368	147336368	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcagtatgtctcctatttcTgcaagatgtcaagattgttg	9	7	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	147336368	147336368	T	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.2068	p.C690R	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	144	0	0	129	30	18.87	-	-	-	C	147336368	T	C	147336368	3	2	281	1	0	0	0	0	1	0	0	0	3677	1580	55	5	2118	5	CNTNAP2	7	147336368	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	4769994	147336368	11802295	526	31790										
GIMAP2	0	genome.wustl.edu	37	chr7	150390100	150390100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtaaaggaattcaaacagagCcttataaagtacatggaaac	8	6	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	150390100	150390100	C	T	SNP	GIMAP2	ENST00000223293	human	ensembl	69_37n	1	known	silent	c.726	p.S242	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP2	HGNC	ENSG00000106560	199	0	0	175	46	20.81	-	-	-	T	150390100	C	T	150390100	2	4	281	1	0	0	0	0	0	0	0	1	6432	738	26	4		4	GIMAP2	7	150390100	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3053732	150390100	8748563	527	31791										
GIMAP5	0	genome.wustl.edu	37	chr7	150439805	150439805	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcaacaactggggctctgTggaggagcagaggcagcagc	15	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	150439805	150439805	T	C	SNP	GIMAP5	ENST00000358647	human	ensembl	69_37n	1	known	missense	c.578	p.V193A	0.001	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP5	HGNC	ENSG00000196329	207	0	0	167	26	13.33	-	-	-	C	150439805	T	C	150439805	3	2	281	1	0	0	0	0	1	0	0	0	6434	1696	59	5	584	5	GIMAP5	7	150439805	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	49705	150439805	8698858	528	31792										
SLC4A2	0	genome.wustl.edu	37	chr7	150771315	150771315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctgtcgctggtgctcatgGccggcaccttcttcatcgcc	11	15	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	150771315	150771315	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.2725	p.A909T	1.000	pfam_HCO3_transpt_C,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	26	0	0	8	4	33.33	-	-	-	A	150771315	G	A	150771315	3	1	281	1	0	0	0	0	1	0	0	0	14743	1203	42	4	2787	4	SLC4A2	7	150771315	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	331510	150771315	8367348	529	31793										
RBM33	0	genome.wustl.edu	37	chr7	155531074	155531074	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caggacagccgtttctgcccAcacacacacagcccaacctg	7	18	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	155531074	155531074	A	C	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.1714	p.T572P	0.058	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	150	0	0	123	32	20.38	-	-	-	C	155531074	A	C	155531074	3	2	281	1	0	0	0	0	1	0	0	0	13213	159	6	5	1756	5	RBM33	7	155531074	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4759759	155531074	3607589	530	31794										
ESYT2	0	genome.wustl.edu	37	chr7	158557431	158557431	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actctgctttggaagatttgGttgccaactctaatgattcc	8	9	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	158557431	158557431	G	A	SNP	ESYT2	ENST00000251527	human	ensembl	69_37n	-1	known	silent	c.1182	p.N394	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	ESYT2	HGNC	ENSG00000117868	176	0	0	121	105	46.46	-	-	-	A	158557431	G	A	158557431	2	1	281	1	0	0	0	0	0	0	0	1	5302	1252	44	4		4	ESYT2	7	158557431	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3026357	158557431	581232	531	31795										
WDR60	0	genome.wustl.edu	37	chr7	158672483	158672483	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagatcgagacaacaaacacCgagaaaaaagcagcacaagg	9	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	7	158672483	158672483	C	T	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	nonsense	c.682	p.R228*	0.012	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	241	0	0	193	74	27.72	-	-	-	T	158672483	C	T	158672483	4	4	281	1	0	0	0	0	0	1	0	0	17408	644	23	1	700	1	WDR60	7	158672483	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	115052	158672483	466180	532	31796										
PPP1R3B	0	genome.wustl.edu	37	chr8	8998374	8998374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaacagaccataggaacacCgagggcttccgaactggtca	11	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	8998374	8998374	C	A	SNP	PPP1R3B	ENST00000310455	human	ensembl	69_37n	-1	known	missense	c.788	p.R263L	1.000	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281	83	0	0	70	24	25.26	-	-	-	A	8998374	C	A	8998374	3	1	281	1	0	0	0	0	1	0	0	0	12449	652	23	3	73	3	PPP1R3B	8	8998374	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		8998374	137365648	533	31797										
TNKS	0	genome.wustl.edu	37	chr8	9623846	9623848	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggatttattttgctgaaaaCtcctcaaaaagcaaccaata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	9623846	9623848	CTC	-	DEL	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	in_frame_del	c.3651_3653	p.S1219in_frame_del	0.993:1.000:1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	41	0	0	56	8	12.5	-	-	-	-	9623848	CTC	-	9623846	7	5	281	1	0	1	0	1	0	0	0	0	16414	564	20	0	3749	0	TNKS	8	9623846	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	625472	9623846	136740176	534	31798										
SOX7	0	genome.wustl.edu	37	chr8	10583475	10583475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggctcagttgatccagggCgtcgaagccagggtgctcag	15	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	10583475	10583475	C	T	SNP	SOX7	ENST00000553390	human	ensembl	69_37n	-1	known	missense	c.1096	p.A366T	0.579	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_superfamily	-	no_errors	SOX7	HGNC	ENSG00000171056	40	0	0	20	9	31.03	-	-	-	T	10583475	C	T	10583475	3	4	281	1	0	0	0	0	1	0	0	0	15045	768	27	1	230	1	SOX7	8	10583475	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	959629	10583475	135780547	535	31799										
DLC1	0	genome.wustl.edu	37	chr8	12957997	12957997	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgatgacggagttagtccGgggggtggcagcatcctcgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	12957997	12957997	G	-	DEL	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	frame_shift_del	c.1849	p.R617fs	0.834	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	70	0	0	44	16	25.81	-	-	-	-	12957997	G	-	12957997	7	5	281	1	0	1	0	1	0	0	0	0	4586	1115	39	0	2777	0	DLC1	8	12957997	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	2374522	12957997	133406025	536	31800										
NAT1	0	genome.wustl.edu	37	chr8	18079850	18079851	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtttacagcactccagccINSaaaaaatacagcactggcat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	18079850	18079851	-	A	INS	NAT1	ENST00000545197	human	ensembl	69_37n	1	known	frame_shift_ins	c.480_481	p.Y162fs	0.000:0.000	pfam_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT1	HGNC	ENSG00000171428	376	0	0	417	84	16.77	-	-	-	A	18079851	-	A	18079850	7	5	281	1	0	1	1	0	0	0	0	0	10245	581	21	0	490	0	NAT1	8	18079850	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5121853	18079850	128284172	537	31801										
SLC18A1	0	genome.wustl.edu	37	chr8	20028926	20028926	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtgacttacctccatccagTagtgccaggaaggccaggat	12	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	20028926	20028926	T	C	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	silent	c.804	p.L268	0.080	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	195	1	0.51	80	78	49.37	-	-	-	C	20028926	T	C	20028926	2	2	281	1	0	0	0	0	0	0	0	1	14514	1625	57	5		5	SLC18A1	8	20028926	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1949076	20028926	126335096	538	31802										
LZTS1	0	genome.wustl.edu	37	chr8	20112381	20112381	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggagaagggcatgagcttGgggggtgtggacgggtcaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	20112381	20112381	G	-	DEL	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	frame_shift_del	c.312	p.K105fs	0.989	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	31	0	0	12	7	35	-	-	-	-	20112381	G	-	20112381	7	5	281	1	0	1	0	1	0	0	0	0	9205	1335	47	0	1490	0	LZTS1	8	20112381	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	83455	20112381	126251641	539	31803										
GFRA2	0	genome.wustl.edu	37	chr8	21608335	21608335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcggtgggcgagatctcgcGgttgcagatggagatgtagg	18	7	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	21608335	21608335	G	A	SNP	GFRA2	ENST00000517328	human	ensembl	69_37n	-1	known	missense	c.559	p.R187C	0.941	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt_a2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546	30	0	0	12	22	64.71	-	-	-	A	21608335	G	A	21608335	3	1	281	1	0	0	0	0	1	0	0	0	6400	1116	39	1	859	1	GFRA2	8	21608335	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1495954	21608335	124755687	540	31804										
UNC5D	0	genome.wustl.edu	37	chr8	35584038	35584038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taggggggcgcttagtaatgCcaaatacaggtgggtggtaa	16	5	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	35584038	35584038	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1672	p.P558S	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	299	0	0	184	100	35.21	-	-	-	T	35584038	C	T	35584038	3	4	281	1	0	0	0	0	1	0	0	0	17092	739	26	4	1710	4	UNC5D	8	35584038	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	13975703	35584038	110779984	541	31805										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37729658	37729660	+	In_Frame_Del	DEL	GGA	GGA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaactctcctcctgggaggGgaggaggaggtgatccgctg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	37729658	37729660	GGA	-	DEL	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	in_frame_del	c.2662_2660	p.L887in_frame_del	0.000:0.000:0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	81	0	0	57	32	34.04	-	-	-	-	37729660	GGA	-	37729658	7	5	281	1	0	1	0	1	0	0	0	0	12976	1232	43	0	1201	0	RAB11FIP1	8	37729658	In_Frame_Del	DEL	GGA	TCGA-AN-A0AK-01A-21W-A019-09	2145620	37729658	108634364	542	31806										
SNTG1	0	genome.wustl.edu	37	chr8	51705323	51705323	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggaccctctatttttaggCaatcaagctactgcttctac	6	11	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	51705323	51705323	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	1	known	silent	c.1488	p.G496	0.991	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	200	1	0.5	175	36	17.06	-	-	-	T	51705323	C	T	51705323	2	4	281	1	0	0	0	0	0	0	0	1	14963	697	25	4		4	SNTG1	8	51705323	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	13975665	51705323	94658699	543	31807										
MRPL15	0	genome.wustl.edu	37	chr8	55049888	55049888	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagtatcttattgatttgggTcgtgttgatcctagtcaacc	9	8	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	55049888	55049888	T	C	SNP	MRPL15	ENST00000260102	human	ensembl	69_37n	1	known	silent	c.324	p.G108	0.996	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	MRPL15	HGNC	ENSG00000137547	103	0	0	106	20	15.87	-	-	-	C	55049888	T	C	55049888	2	2	281	1	0	0	0	0	0	0	0	1	9852	1654	58	5		5	MRPL15	8	55049888	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	3344565	55049888	91314134	544	31808										
RP1	0	genome.wustl.edu	37	chr8	55537499	55537499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccataaaatggacaactactGtcagtaaaactggtccttct	6	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	55537499	55537499	G	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.1057	p.V353I	0.863	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	67	0	0	44	11	20	-	-	-	A	55537499	G	A	55537499	3	1	281	1	0	0	0	0	1	0	0	0	13618	1377	48	4	1067	4	RP1	8	55537499	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	487611	55537499	90826523	545	31809										
CSPP1	0	genome.wustl.edu	37	chr8	68007969	68007969	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagtgtatacaaatgacaggTatttacaacttcatttttat	6	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	68007969	68007969	T	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	splice_site	c.950+2	e6+2	1.000	-	-	-	no_errors	CSPP1	HGNC	ENSG00000104218	94	0	0	99	22	18.18	-	-	-	C	68007969	T	C	68007969	5	2	281	1	0	0	0	0	0	0	1	0	3994	1652	57	5	1087	5	CSPP1	8	68007969	Splice_Site	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	12470470	68007969	78356053	546	31810										
CSPP1	0	genome.wustl.edu	37	chr8	68070684	68070684	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaagtttaattctttagatTgaggaaaagaaacaaagaga	8	3	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	68070684	68070684	T	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.2229	p.I743	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	103	0	0	71	26	26.8	-	-	-	C	68070684	T	C	68070684	2	2	281	1	0	0	0	0	0	0	0	1	3994	1800	63	5		5	CSPP1	8	68070684	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	62715	68070684	78293338	547	31811										
SLCO5A1	0	genome.wustl.edu	37	chr8	70585379	70585379	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctccttgtattttatggagtAccaggccagaaaaataaaaa	7	7	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	70585379	70585379	A	G	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.2272	p.Y758H	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	162	0	0	62	85	57.82	-	-	-	G	70585379	A	G	70585379	3	3	281	1	0	0	0	0	1	0	0	0	14820	391	14	5	278	5	SLCO5A1	8	70585379	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2514695	70585379	75778643	548	31812										
LACTB2	0	genome.wustl.edu	37	chr8	71553137	71553137	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ataagaaaactgaaaattacCttgtaaataatttttacaag	4	4	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	71553137	71553137	C	A	SNP	LACTB2	ENST00000276590	human	ensembl	69_37n	-1	known	missense	c.741	p.K247N	1.000	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	LACTB2	HGNC	ENSG00000147592	41	0	0	34	12	26.09	-	-	-	A	71553137	C	A	71553137	3	1	281	1	0	0	0	0	1	0	0	0	8652	695	24	4	137	4	LACTB2	8	71553137	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	967758	71553137	74810885	549	31813										
ZFHX4	0	genome.wustl.edu	37	chr8	77768193	77768193	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaccagagtgtaccctctgCggggtgaagtactctgcccg	12	12	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	77768193	77768193	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.9036	p.C3012	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	133	0	0	166	23	12.17	-	-	-	T	77768193	C	T	77768193	2	4	281	1	0	0	0	0	0	0	0	1	17731	776	27	1		1	ZFHX4	8	77768193	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6215056	77768193	68595829	550	31814										
ZFHX4	0	genome.wustl.edu	37	chr8	77776083	77776085	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tactgctacagaaagcacaaAagaagaaccccagttagaat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	77776083	77776085	AAG	-	DEL	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	in_frame_del	c.10133_10135	p.E3380in_frame_del	1.000:1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	57	0	0	53	55	49.55	-	-	-	-	77776085	AAG	-	77776083	7	5	281	1	0	1	0	1	0	0	0	0	17731	14	1	0	10171	0	ZFHX4	8	77776083	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	7890	77776083	68587939	551	31815										
RUNX1T1	0	genome.wustl.edu	37	chr8	92988197	92988197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtgaaggaattcccgatgCgcgtctatgaaaaggatggg	14	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	92988197	92988197	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	silent	c.1317	p.A439	0.170	prints_MTG8	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	142	1	0.7	88	125	58.69	-	-	-	T	92988197	C	T	92988197	2	4	281	1	0	0	0	0	0	0	0	1	13833	755	27	1		1	RUNX1T1	8	92988197	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	15212114	92988197	53375825	552	31816										
VPS13B	0	genome.wustl.edu	37	chr8	100791209	100791209	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attctgtatttgtaaaccttGgacagcatgtagtccattca	7	8	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	100791209	100791209	G	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	nonsense	c.7804	p.G2602*	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	121	0	0	137	28	16.97	-	-	-	T	100791209	G	T	100791209	4	4	281	1	0	0	0	0	0	1	0	0	17287	1349	47	4	8160	4	VPS13B	8	100791209	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	7803012	100791209	45572813	553	31817										
SPAG1	0	genome.wustl.edu	37	chr8	101237470	101237470	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtcacctattcctgctgtGcctgcttctgtgccactgca	8	15	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	101237470	101237470	G	A	SNP	SPAG1	ENST00000251809	human	ensembl	69_37n	1	known	silent	c.1758	p.V586	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450	53	0	0	29	48	62.34	-	-	-	A	101237470	G	A	101237470	2	1	281	1	0	0	0	0	0	0	0	1	15066	1306	46	4		4	SPAG1	8	101237470	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	446261	101237470	45126552	554	31818										
AZIN1	0	genome.wustl.edu	37	chr8	103851050	103851050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatattcactccaacttttGctgcatactttatctgagac	6	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	103851050	103851050	G	A	SNP	AZIN1	ENST00000337198	human	ensembl	69_37n	-1	known	missense	c.371	p.A124V	1.000	pfam_De-COase2_N,prints_Orn_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	AZIN1	HGNC	ENSG00000155096	90	0	0	43	81	65.32	-	-	-	A	103851050	G	A	103851050	3	1	281	1	0	0	0	0	1	0	0	0	1246	1319	46	4	1007	4	AZIN1	8	103851050	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2613580	103851050	42512972	555	31819										
RIMS2	0	genome.wustl.edu	37	chr8	104924347	104924347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgcattttattaaataagCgtctaaaagatggaagtgta	9	4	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	104924347	104924347	C	T	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.1759	p.R587C	1.000	superfamily_PDZ	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	97	0	0	60	76	55.88	-	-	-	T	104924347	C	T	104924347	3	4	281	1	0	0	0	0	1	0	0	0	13454	768	27	1	1907	1	RIMS2	8	104924347	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1073297	104924347	41439675	556	31820										
ZFPM2	0	genome.wustl.edu	37	chr8	106815706	106815706	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atccagttcaacaacctttcAaactttataactcacaagaa	2	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	106815706	106815706	A	G	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	silent	c.3396	p.S1132	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	38	0	0	28	40	58.82	-	-	-	G	106815706	A	G	106815706	2	3	281	1	0	0	0	0	0	0	0	1	17754	117	5	5		5	ZFPM2	8	106815706	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1891359	106815706	39548316	557	31821										
OXR1	0	genome.wustl.edu	37	chr8	107754450	107754451	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgccttttttatccttaggINStttttggtgcgttagcatct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	107754450	107754451	-	T	INS	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	frame_shift_ins	c.2320_2321	p.G776fs	1.000:1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	76	0	0	45	70	60.87	-	-	-	T	107754451	-	T	107754450	7	5	281	1	0	1	1	0	0	0	0	0	11407	1275	44	0	2489	0	OXR1	8	107754450	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	938744	107754450	38609572	558	31822										
TMEM74	0	genome.wustl.edu	37	chr8	109796918	109796918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gattttcccagccaagctccCcagggtgattatgccctttt	8	13	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	109796918	109796918	C	T	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.410	p.G137E	0.014	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	99	0	0	91	18	16.51	-	-	-	T	109796918	C	T	109796918	3	4	281	1	0	0	0	0	1	0	0	0	16297	623	22	4	511	4	TMEM74	8	109796918	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2042468	109796918	36567104	559	31823										
SYBU	0	genome.wustl.edu	37	chr8	110631211	110631211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccaatggggctgtttccaGcatctgagggtgtcttcaca	12	10	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	110631211	110631211	G	A	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.287	p.A96V	0.992	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	135	0	0	180	37	17.05	-	-	-	A	110631211	G	A	110631211	3	1	281	1	0	0	0	0	1	0	0	0	15518	971	34	4	1724	4	SYBU	8	110631211	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	834293	110631211	35732811	560	31824										
NOV	0	genome.wustl.edu	37	chr8	120430411	120430411	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgggcagattggctgtgtgCcccgctgtcagctggatgtg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	120430411	120430411	C	-	DEL	NOV	ENST00000259526	human	ensembl	69_37n	1	known	frame_shift_del	c.424	p.R143fs	1.000	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999	79	0	0	25	46	63.01	-	-	-	-	120430411	C	-	120430411	7	5	281	1	0	1	0	1	0	0	0	0	10625	739	26	0	434	0	NOV	8	120430411	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	9799200	120430411	25933611	561	31825										
ZHX2	0	genome.wustl.edu	37	chr8	123965770	123965770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggtccgaactgagattgtgCgttggttcaaggagaacaga	14	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	123965770	123965770	C	T	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.2020	p.R674C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	94	0	0	134	16	10.67	-	-	-	T	123965770	C	T	123965770	3	4	281	1	0	0	0	0	1	0	0	0	17772	768	27	1	2022	1	ZHX2	8	123965770	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3535359	123965770	22398252	562	31826										
ZHX2	0	genome.wustl.edu	37	chr8	123966150	123966150	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtggaggtgacggtcggggaGgaggatgcgatctcagatag	20	5	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	123966150	123966150	G	T	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.2400	p.E800D	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	69	0	0	109	16	12.8	-	-	-	T	123966150	G	T	123966150	3	4	281	1	0	0	0	0	1	0	0	0	17772	991	35	4	2402	4	ZHX2	8	123966150	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	380	123966150	22397872	563	31827										
TRMT12	0	genome.wustl.edu	37	chr8	125463370	125463370	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctgggagagacgcttccaGagcagcacctgcaggagctg	15	11	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	125463370	125463370	G	T	SNP	TRMT12	ENST00000328599	human	ensembl	69_37n	1	known	nonsense	c.202	p.E68*	0.961	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665	66	0	0	32	58	64.44	-	-	-	T	125463370	G	T	125463370	4	4	281	1	0	0	0	0	0	1	0	0	16660	943	33	2	204	2	TRMT12	8	125463370	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1497220	125463370	20900652	564	31828										
KIAA0196	0	genome.wustl.edu	37	chr8	126062831	126062831	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcgagggttgaatatcagtCccctatgcagggcaaaggca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	126062831	126062831	C	-	DEL	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	frame_shift_del	c.2174	p.G725fs	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	107	0	0	45	81	61.83	-	-	-	-	126062831	C	-	126062831	7	5	281	1	0	1	0	1	0	0	0	0	8213	855	30	0	1353	0	KIAA0196	8	126062831	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	599461	126062831	20301191	565	31829										
TG	0	genome.wustl.edu	37	chr8	133984896	133984898	+	In_Frame_Del	DEL	GAG	GAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggaattcagatgtgcagtGaggagaatggaggagcctgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	133984896	133984898	GAG	-	DEL	TG	ENST00000220616	human	ensembl	69_37n	1	known	in_frame_del	c.6109_6111	p.E2038in_frame_del	0.996:0.998:0.988	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	154	0	0	113	41	26.62	-	-	-	-	133984898	GAG	-	133984896	7	5	281	1	0	1	0	1	0	0	0	0	15908	1291	45	0	6243	0	TG	8	133984896	In_Frame_Del	DEL	GAG	TCGA-AN-A0AK-01A-21W-A019-09	7922065	133984896	12379126	566	31830										
COL22A1	0	genome.wustl.edu	37	chr8	139629192	139629192	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accagaatcgcctgtgtgtcCcttgaagccctagaaggaag	11	11	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	139629192	139629192	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	nonsense	c.3835	p.G1279*	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	56	0	0	51	6	10.53	-	-	-	A	139629192	C	A	139629192	4	1	281	1	0	0	0	0	0	1	0	0	3711	632	22	4	1093	4	COL22A1	8	139629192	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5644296	139629192	6734830	567	31831										
FLJ43860	0	genome.wustl.edu	37	chr8	142506590	142506590	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttcatggatgtggagacaGggggggagattctgaaatgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	8	142506590	142506590	G	-	DEL	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	frame_shift_del	c.92	p.P31fs	0.000	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	33	0	0	11	10	40	-	-	-	-	142506590	G	-	142506590	7	5	281	1	0	1	0	1	0	0	0	0	5976	1000	35	0	3980	0	FLJ43860	8	142506590	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	2877398	142506590	3857432	568	31832										
KIAA1432	0	genome.wustl.edu	37	chr9	5772697	5772697	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagctggagcacatttccatGgagttggccagtaaagggcc	14	9	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	5772697	5772697	G	T	SNP	KIAA1432	ENST00000545641	human	ensembl	69_37n	1	novel	nonsense	c.3424	p.G1142*	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1432	HGNC	ENSG00000107036	93	0	0	78	12	13.33	-	-	-	T	5772697	G	T	5772697	4	4	281	1	0	0	0	0	0	1	0	0	8285	1348	47	4	3677	4	KIAA1432	9	5772697	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09		5772697	135440734	569	31833										
ERMP1	0	genome.wustl.edu	37	chr9	5805749	5805750	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggacaaacagcgaaatgtcINSaaaaaatacttctcccagat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	5805749	5805750	-	A	INS	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1585_1584	p.D528fs	1.000:1.000	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	201	1	0.5	164	28	14.58	-	-	-	A	5805750	-	A	5805749	7	5	281	1	0	1	1	0	0	0	0	0	5273	826	29	0	1157	0	ERMP1	9	5805749	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	33052	5805749	135407682	570	31834										
TYRP1	0	genome.wustl.edu	37	chr9	12709118	12709118	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaccagcctctcctcactgAtcagtatcaatgctatgctg	6	13	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	12709118	12709118	A	T	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	missense	c.1550	p.D517V	1.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	162	0	0	111	23	17.16	-	-	-	T	12709118	A	T	12709118	3	4	281	1	0	0	0	0	1	0	0	0	16913	333	12	5	1576	5	TYRP1	9	12709118	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6903369	12709118	128504313	571	31835										
TEK	0	genome.wustl.edu	37	chr9	27185545	27185545	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcaccatccaccggatcctCccccctgactcaggagtttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	27185545	27185545	C	-	DEL	TEK	ENST00000380036	human	ensembl	69_37n	1	known	frame_shift_del	c.1245	p.P417fs	0.001	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	192	0	0	122	27	17.53	-	-	-	-	27185545	C	-	27185545	7	5	281	1	0	1	0	1	0	0	0	0	15846	842	30	0	1279	0	TEK	9	27185545	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	14476427	27185545	114027886	572	31836										
C9orf72	0	genome.wustl.edu	37	chr9	27566855	27566855	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaataatcactcccttttcAgacaagacaaaaaactttac	2	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	27566855	27566855	A	G	SNP	C9orf72	ENST00000380003	human	ensembl	69_37n	-1	known	silent	c.264	p.S88	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894	97	0	0	41	11	21.15	-	-	-	G	27566855	A	G	27566855	2	3	281	1	0	0	0	0	0	0	0	1	2520	175	7	5		5	C9orf72	9	27566855	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	381310	27566855	113646576	573	31837										
TAF1L	0	genome.wustl.edu	37	chr9	32633582	32633582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcttgttctctcatcttggCcttttttttgatgtgcttta	6	9	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	32633582	32633582	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.1996	p.A666T	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	290	0	0	192	64	24.9	-	-	-	T	32633582	C	T	32633582	3	4	281	1	0	0	0	0	1	0	0	0	15615	739	26	4	3488	4	TAF1L	9	32633582	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5066727	32633582	108579849	574	31838										
DNAJA1	0	genome.wustl.edu	37	chr9	33034319	33034319	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatcagaaggaccatgctgTttttactcggtaaagacttt	9	7	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	33034319	33034319	T	G	SNP	DNAJA1	ENST00000330899	human	ensembl	69_37n	1	known	missense	c.749	p.V250G	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA1	HGNC	ENSG00000086061	60	0	0	38	7	15.56	-	-	-	G	33034319	T	G	33034319	3	3	281	1	0	0	0	0	1	0	0	0	4646	1725	60	5	767	5	DNAJA1	9	33034319	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	400737	33034319	108179112	575	31839										
NOL6	0	genome.wustl.edu	37	chr9	33469229	33469229	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccctgcaggactctgccctcGgtaccaggcagagcgcacat	11	16	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	33469229	33469229	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	nonsense	c.838	p.R280*	0.887	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	107	0	0	51	15	22.73	-	-	-	A	33469229	G	A	33469229	4	1	281	1	0	0	0	0	0	1	0	0	10597	1124	39	1	2686	1	NOL6	9	33469229	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	434910	33469229	107744202	576	31840										
UBAP2	0	genome.wustl.edu	37	chr9	33923949	33923949	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtggctgagctggtgtggtAgcgggtgcaggggatgcaga	21	5	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	33923949	33923949	A	C	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	silent	c.2640	p.A880	0.636	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	84	0	0	40	12	23.08	-	-	-	C	33923949	A	C	33923949	2	2	281	1	0	0	0	0	0	0	0	1	16934	407	15	5		5	UBAP2	9	33923949	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	454720	33923949	107289482	577	31841										
NPR2	0	genome.wustl.edu	37	chr9	35809217	35809217	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagctaggatgcttccagctAgagcttcggggggatgtgga	17	7	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	35809217	35809217	A	G	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	silent	c.3051	p.L1017	0.999	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	202	0	0	86	46	34.59	-	-	-	G	35809217	A	G	35809217	2	3	281	1	0	0	0	0	0	0	0	1	10668	407	15	5		5	NPR2	9	35809217	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1885268	35809217	105404214	578	31842										
SMC5	0	genome.wustl.edu	37	chr9	72933477	72933477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atttatacagcagaagaaaaGtatgtggtgaaaacttcttt	8	4	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	72933477	72933477	G	T	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	missense	c.1854	p.K618N	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	115	0	0	140	17	10.83	-	-	-	T	72933477	G	T	72933477	3	4	281	1	0	0	0	0	1	0	0	0	14875	1020	36	4	1908	4	SMC5	9	72933477	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	37124260	72933477	68279954	579	31843										
FRMD3	0	genome.wustl.edu	37	chr9	85862948	85862948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggtgtctggcggatttcgCataagaaggagagatcaata	13	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	85862948	85862948	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.1679	p.C560Y	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	224	0	0	150	93	38.27	-	-	-	T	85862948	C	T	85862948	3	4	281	1	0	0	0	0	1	0	0	0	6099	710	25	4	118	4	FRMD3	9	85862948	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	12929471	85862948	55350483	580	31844										
HNRNPK	0	genome.wustl.edu	37	chr9	86584223	86584223	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctttttaaacagaagcagatAaaaaaaaaaagatgcaggac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	86584223	86584223	A	-	DEL	HNRNPK	ENST00000493362	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HNRNPK	HGNC	ENSG00000165119	112	0	0	69	55	41.98	-	-	-	-	86584223	A	-	86584223	6	5	281	0	1	1	0	1	0	0	0	0	7320	377	13	0		0	HNRNPK	9	86584223	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	721275	86584223	54629208	581	31845										
HNRNPK	0	genome.wustl.edu	37	chr9	86590410	86590410	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctgtctgggactgaaacaCtggcattgtactgcattggt	12	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	86590410	86590410	C	G	SNP	HNRNPK	ENST00000376263	human	ensembl	69_37n	-1	known	missense	c.224	p.S75T	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_ROK_N,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HNRNPK	HGNC	ENSG00000165119	62	0	0	37	12	24.49	-	-	-	G	86590410	C	G	86590410	3	3	281	1	0	0	0	0	1	0	0	0	7320	565	20	4	1253	4	HNRNPK	9	86590410	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6187	86590410	54623021	582	31846										
S1PR3	0	genome.wustl.edu	37	chr9	91616443	91616443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgttcagcctgtctcccacgGtctggttcctcagggagggc	13	14	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	91616443	91616443	G	A	SNP	S1PR3	ENST00000358157	human	ensembl	69_37n	1	known	missense	c.328	p.V110I	0.831	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG3_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694	129	0	0	89	25	21.93	-	-	-	A	91616443	G	A	91616443	3	1	281	1	0	0	0	0	1	0	0	0	13881	1261	44	4	330	4	S1PR3	9	91616443	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5026033	91616443	49596988	583	31847										
S1PR3	0	genome.wustl.edu	37	chr9	91616712	91616712	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccaagaagtacattgccttCtgcatcagcatcttcacggc	7	13	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	91616712	91616712	C	T	SNP	S1PR3	ENST00000358157	human	ensembl	69_37n	1	known	silent	c.597	p.F199	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Cnbnoid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG3_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694	110	0	0	83	11	11.58	-	-	-	T	91616712	C	T	91616712	2	4	281	1	0	0	0	0	0	0	0	1	13881	912	32	2		2	S1PR3	9	91616712	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	269	91616712	49596719	584	31848										
PTCH1	0	genome.wustl.edu	37	chr9	98220458	98220458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aactggacagccccaggctcGtatagttgctgcagatggtc	12	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	98220458	98220458	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3005	p.T1002M	0.994	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	48	0	0	27	17	38.64	-	-	-	A	98220458	G	A	98220458	3	1	281	1	0	0	0	0	1	0	0	0	12810	1145	40	1	1362	1	PTCH1	9	98220458	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6603746	98220458	42992973	585	31849										
TDRD7	0	genome.wustl.edu	37	chr9	100242710	100242711	+	RNA	DEL	TT	TT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcctccaaatgacaattgaTttttttttttttttaagttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	100242710	100242711	TT	-	DEL	TDRD7	ENST00000492428	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	TDRD7	HGNC	ENSG00000196116	9	0	0	4	2	33.33	-	-	-	-	100242711	TT	-	100242710	6	5	281	0	1	1	0	1	0	0	0	0	15830	1508	52	0		0	TDRD7	9	100242710	RNA	DEL	TT	TCGA-AN-A0AK-01A-21W-A019-09	2022252	100242710	40970721	586	31850										
XPA	0	genome.wustl.edu	37	chr9	100437634	100437634	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcatctatgaagatgttgcTtttttttttgaattttgaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936	32	0	0	19	16	44.44	-	-	-	-	100437634	T	-	100437634	6	5	281	0	1	1	0	1	0	0	0	0	17537	1624	56	0		0	XPA	9	100437634	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	194924	100437634	40775797	587	31851										
ANP32B	0	genome.wustl.edu	37	chr9	100773651	100773651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtagaaggggatgaggacGacgatgaagtcagtgaggag	18	3	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	100773651	100773651	G	A	SNP	ANP32B	ENST00000339399	human	ensembl	69_37n	1	known	missense	c.616	p.D206N	1.000	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32B	HGNC	ENSG00000136938	30	0	0	12	9	42.86	-	-	-	A	100773651	G	A	100773651	3	1	281	1	0	0	0	0	1	0	0	0	705	1058	37	1	634	1	ANP32B	9	100773651	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	336017	100773651	40439780	588	31852										
TBC1D2	0	genome.wustl.edu	37	chr9	100962587	100962587	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caggtactggtagatttccaGgccattctgtagcctcaaga	10	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	100962587	100962587	G	A	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	silent	c.2494	p.L832	0.915	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	55	0	0	15	10	40	-	-	-	A	100962587	G	A	100962587	2	1	281	1	0	0	0	0	0	0	0	1	15700	991	35	4		4	TBC1D2	9	100962587	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	188936	100962587	40250844	589	31853										
ANKS6	0	genome.wustl.edu	37	chr9	101518763	101518763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggactgccgatgggatgaCgaggaagacactgaggactc	15	8	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	101518763	101518763	C	T	SNP	ANKS6	ENST00000444472	human	ensembl	69_37n	-1	putative	missense	c.673	p.V225I	0.995	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKS6	HGNC	ENSG00000165138	93	0	0	65	29	30.85	-	-	-	T	101518763	C	T	101518763	3	4	281	1	0	0	0	0	1	0	0	0	691	523	19	1	366	1	ANKS6	9	101518763	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	556176	101518763	39694668	590	31854										
ANKS6	0	genome.wustl.edu	37	chr9	101546393	101546393	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccccattgaccaagttcacGtggctggggtcttcatcggc	11	13	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	101546393	101546393	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	silent	c.954	p.H318	0.678	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	68	0	0	28	20	41.67	-	-	-	A	101546393	G	A	101546393	2	1	281	1	0	0	0	0	0	0	0	1	691	1136	40	1		1	ANKS6	9	101546393	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	27630	101546393	39667038	591	31855										
GRIN3A	0	genome.wustl.edu	37	chr9	104432497	104432497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acattttggaggtttgatggCcactgttctgccaaacaaga	10	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	104432497	104432497	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.2197	p.A733T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	191	0	0	94	79	45.66	-	-	-	T	104432497	C	T	104432497	3	4	281	1	0	0	0	0	1	0	0	0	6834	739	26	4	1178	4	GRIN3A	9	104432497	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2886104	104432497	36780934	592	31856										
SMC2	0	genome.wustl.edu	37	chr9	106896847	106896847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaacctaactgaacttagtgGtggtcagaggtgaggaatca	12	6	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	106896847	106896847	G	A	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	missense	c.3260	p.G1087D	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	111	0	0	96	14	12.73	-	-	-	A	106896847	G	A	106896847	3	1	281	1	0	0	0	0	1	0	0	0	14872	1261	44	4	3346	4	SMC2	9	106896847	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2464350	106896847	34316584	593	31857										
IKBKAP	0	genome.wustl.edu	37	chr9	111668705	111668705	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagacgtcttcttcaatccaAgtgagaaggcctagtttcag	9	9	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	111668705	111668705	A	G	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	silent	c.1521	p.T507	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	291	0	0	216	85	28.24	-	-	-	G	111668705	A	G	111668705	2	3	281	1	0	0	0	0	0	0	0	1	7664	59	3	5		5	IKBKAP	9	111668705	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4771858	111668705	29544726	594	31858										
C9orf84	0	genome.wustl.edu	37	chr9	114490015	114490016	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggtccaaatcattctcttgINSttttttgccatgttcaaaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	114490015	114490016	-	T	INS	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1540_1539	p.Q513fs	0.000:0.002	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	143	0	0	141	32	18.5	-	-	-	T	114490016	-	T	114490015	7	5	281	1	0	1	1	0	0	0	0	0	2525	1386	48	0	2858	0	C9orf84	9	114490015	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2821310	114490015	26723416	595	31859										
SLC46A2	0	genome.wustl.edu	37	chr9	115652996	115652996	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggatcgaagggctttctgGctgcagtgacaaggatatgc	16	7	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	115652996	115652996	G	A	SNP	SLC46A2	ENST00000491462	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A2	HGNC	ENSG00000119457	17	0	0	14	4	22.22	-	-	-	A	115652996	G	A	115652996	1	1	281	0	1	0	0	0	0	0	0	0	14734	1218	42	4		4	SLC46A2	9	115652996	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1162981	115652996	25560435	596	31860										
FKBP15	0	genome.wustl.edu	37	chr9	115959278	115959278	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtccagcctattaccccttcTgagccaacagcacaggctgg	9	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	115959278	115959278	T	A	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	silent	c.798	p.S266	0.969	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	230	0	0	162	58	26.36	-	-	-	A	115959278	T	A	115959278	2	1	281	1	0	0	0	0	0	0	0	1	5951	1567	55	5		5	FKBP15	9	115959278	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	306282	115959278	25254153	597	31861										
FKBP15	0	genome.wustl.edu	37	chr9	115969535	115969535	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcgaccagtattgtgggagTgctcatggtggctggtgctg	17	7	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	115969535	115969535	T	C	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	missense	c.211	p.T71A	0.987	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	240	0	0	168	89	34.36	-	-	-	C	115969535	T	C	115969535	3	2	281	1	0	0	0	0	1	0	0	0	5951	1696	59	5	3552	5	FKBP15	9	115969535	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	10257	115969535	25243896	598	31862										
COL27A1	0	genome.wustl.edu	37	chr9	116940622	116940622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccctggtgcacgtgggcctCgggtgagttatctcacactg	13	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	116940622	116940622	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.1960	p.R654W	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	74	0	0	30	22	42.31	-	-	-	T	116940622	C	T	116940622	3	4	281	1	0	0	0	0	1	0	0	0	3715	875	31	1	1974	1	COL27A1	9	116940622	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	971087	116940622	24272809	599	31863										
TNFSF8	0	genome.wustl.edu	37	chr9	117666356	117666356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaattgagagagattctggTatacgtgtttcgtttgcatt	11	4	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	117666356	117666356	T	C	SNP	TNFSF8	ENST00000223795	human	ensembl	69_37n	-1	known	missense	c.560	p.Y187C	0.998	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_CD30_ligand_type,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_CD30_ligand_type,pfscan_TNF	-	no_errors	TNFSF8	HGNC	ENSG00000106952	301	0	0	170	102	37.5	-	-	-	C	117666356	T	C	117666356	3	2	281	1	0	0	0	0	1	0	0	0	16406	1638	57	5	148	5	TNFSF8	9	117666356	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	725734	117666356	23547075	600	31864										
TNC	0	genome.wustl.edu	37	chr9	117825465	117825465	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtttcccatatctggaaccTcctctgcataaggacacaga	8	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	117825465	117825465	T	C	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.3764	p.E1255G	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	104	0	0	91	27	22.88	-	-	-	C	117825465	T	C	117825465	3	2	281	1	0	0	0	0	1	0	0	0	16365	1551	54	5	2905	5	TNC	9	117825465	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	159109	117825465	23387966	601	31865										
ASTN2	0	genome.wustl.edu	37	chr9	119188274	119188274	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggcagaaaagatagggcacTgtttccacgcggctctggat	13	10	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	119188274	119188274	T	G	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	silent	c.3876	p.T1292	0.998	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	48	0	0	23	17	42.5	-	-	-	G	119188274	T	G	119188274	2	3	281	1	0	0	0	0	0	0	0	1	1069	1567	55	5		5	ASTN2	9	119188274	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1362809	119188274	22025157	602	31866										
TLR4	0	genome.wustl.edu	37	chr9	120476789	120476789	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctcagcaggaacacttacCtggagtgggaggacagtgtc	13	9	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	120476789	120476789	C	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	silent	c.2383	p.L795	1.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	110	0	0	83	22	20.95	-	-	-	T	120476789	C	T	120476789	2	4	281	1	0	0	0	0	0	0	0	1	16048	680	24	4		4	TLR4	9	120476789	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1288515	120476789	20736642	603	31867										
DBC1	0	genome.wustl.edu	37	chr9	121930446	121930446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaggaaggttccccaaaacCcattctcattacagtagagg	8	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	121930446	121930446	C	T	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.1202	p.G401E	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	41	0	0	24	9	27.27	-	-	-	T	121930446	C	T	121930446	3	4	281	1	0	0	0	0	1	0	0	0	4279	623	22	4	1087	4	DBC1	9	121930446	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1453657	121930446	19282985	604	31868										
PSMD5	0	genome.wustl.edu	37	chr9	123589008	123589008	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ataactcagaaataaaacacGcaccatcatttccataggca	4	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	123589008	123589008	G	A	SNP	PSMD5	ENST00000496688	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMD5	HGNC	ENSG00000095261	120	0	0	117	17	12.59	-	-	-	A	123589008	G	A	123589008	1	1	281	0	1	0	0	0	0	0	0	0	12781	1102	38	1		1	PSMD5	9	123589008	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1658562	123589008	17624423	605	31869										
MORN5	0	genome.wustl.edu	37	chr9	124962307	124962307	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcattggctgccctgggggaCgggctgtagttctagaacct	15	10	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	124962307	124962307	C	T	SNP	MORN5	ENST00000486801	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MORN5	HGNC	ENSG00000185681	88	0	0	32	19	37.25	-	-	-	T	124962307	C	T	124962307	1	4	281	0	1	0	0	0	0	0	0	0	9783	551	19	1		1	MORN5	9	124962307	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1373299	124962307	16251124	606	31870										
PTGS1	0	genome.wustl.edu	37	chr9	125143664	125143664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaccagggaagaagcagttgCcagatgcccagctcctggcc	12	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	125143664	125143664	C	T	SNP	PTGS1	ENST00000362012	human	ensembl	69_37n	1	known	missense	c.511	p.P171S	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	49	0	0	21	6	22.22	-	-	-	T	125143664	C	T	125143664	3	4	281	1	0	0	0	0	1	0	0	0	12836	739	26	4	533	4	PTGS1	9	125143664	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	181357	125143664	16069767	607	31871										
OR1J1	0	genome.wustl.edu	37	chr9	125240101	125240101	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccccagcaccgtggtcagGtacatgcccaggaacagggc	12	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	125240101	125240101	G	A	SNP	OR1J1	ENST00000259357	human	ensembl	69_37n	-1	known	silent	c.105	p.Y35	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J1	HGNC	ENSG00000136834	226	0	0	167	48	22.33	-	-	-	A	125240101	G	A	125240101	2	1	281	1	0	0	0	0	0	0	0	1	11032	1256	44	4		4	OR1J1	9	125240101	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	96437	125240101	15973330	608	31872										
OR5C1	0	genome.wustl.edu	37	chr9	125551761	125551761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatcaatagcttcttctgcGatatccctccactgctggcc	7	14	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	125551761	125551761	G	A	SNP	OR5C1	ENST00000373680	human	ensembl	69_37n	1	known	missense	c.550	p.D184N	0.623	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215	118	0	0	122	19	13.48	-	-	-	A	125551761	G	A	125551761	3	1	281	1	0	0	0	0	1	0	0	0	11226	1058	37	1	552	1	OR5C1	9	125551761	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	311660	125551761	15661670	609	31873										
ZBTB6	0	genome.wustl.edu	37	chr9	125673378	125673378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgcactgtaagcataagaatAgtttatgcattttaaggtgg	10	5	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	125673378	125673378	A	G	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	missense	c.974	p.L325P	0.995	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	126	0	0	80	31	27.93	-	-	-	G	125673378	A	G	125673378	3	3	281	1	0	0	0	0	1	0	0	0	17648	420	15	5	304	5	ZBTB6	9	125673378	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	121617	125673378	15540053	610	31874										
SCAI	0	genome.wustl.edu	37	chr9	127828280	127828280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaatcatacttttcagtgaaAtgttgatatctttccccttg	5	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	127828280	127828280	A	C	SNP	SCAI	ENST00000373549	human	ensembl	69_37n	-1	known	missense	c.156	p.H52Q	0.155	pirsf_UCP013022	pfam_DUF3550,pirsf_UCP013022	-	no_errors	SCAI	HGNC	ENSG00000173611	111	0	0	67	50	42.74	-	-	-	C	127828280	A	C	127828280	3	2	281	1	0	0	0	0	1	0	0	0	13956	98	4	5	1801	5	SCAI	9	127828280	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2154902	127828280	13385151	611	31875										
ZBTB43	0	genome.wustl.edu	37	chr9	129595423	129595423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctgagcacggaaatggcaaGccaggatggggaggagggcg	19	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	129595423	129595423	G	A	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	1	known	missense	c.635	p.S212N	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	26	0	0	21	11	34.38	-	-	-	A	129595423	G	A	129595423	3	1	281	1	0	0	0	0	1	0	0	0	17640	971	34	4	637	4	ZBTB43	9	129595423	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1767143	129595423	11618008	612	31876										
ZNF79	0	genome.wustl.edu	37	chr9	130206388	130206388	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acccatgtgtagagatgcccCctggggattcagaccacggg	13	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	130206388	130206388	C	A	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	missense	c.409	p.P137T	0.003	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	286	0	0	212	35	14.11	-	-	-	A	130206388	C	A	130206388	3	1	281	1	0	0	0	0	1	0	0	0	18254	623	22	4	427	4	ZNF79	9	130206388	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	610965	130206388	11007043	613	31877										
RPL12	0	genome.wustl.edu	37	chr9	130211976	130211976	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggcaatgtcatcaccaacTttttttggagactagaaata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	130211976	130211976	T	-	DEL	RPL12	ENST00000361436	human	ensembl	69_37n	-1	known	frame_shift_del	c.123	p.V42fs	0.954	pfam_Ribosomal_L11_N,superfamily_Ribosomal_L11_N,smart_Ribosomal_L11	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11	-	no_errors	RPL12	HGNC	ENSG00000197958	55	0	0	24	16	40	-	-	-	-	130211976	T	-	130211976	7	5	281	1	0	1	0	1	0	0	0	0	13644	1606	56	0	394	0	RPL12	9	130211976	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	5588	130211976	11001455	614	31878										
SETX	0	genome.wustl.edu	37	chr9	135221823	135221823	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcatggatttttcaaagtgAtttatgagacgtaaggtttc	9	4	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	135221823	135221823	A	T	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.213	p.N71K	0.793	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	54	0	0	35	19	35.19	-	-	-	T	135221823	A	T	135221823	3	4	281	1	0	0	0	0	1	0	0	0	14229	330	12	5	7912	5	SETX	9	135221823	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	5009847	135221823	5991608	615	31879										
VAV2	0	genome.wustl.edu	37	chr9	136635569	136635569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggtacttgagtgtggtgtCcagctgcttgaagctctcct	14	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	136635569	136635569	C	T	SNP	VAV2	ENST00000371850	human	ensembl	69_37n	-1	known	missense	c.2278	p.D760N	1.000	pfscan_SH2	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293	44	0	0	30	4	11.76	-	-	-	T	136635569	C	T	136635569	3	4	281	1	0	0	0	0	1	0	0	0	17229	855	30	2	374	2	VAV2	9	136635569	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1413746	136635569	4577862	616	31880										
COL5A1	0	genome.wustl.edu	37	chr9	137619148	137619148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctctttgtctcggaccacCgggcagcttatgattactgt	10	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	137619148	137619148	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.691	p.R231W	1.000	superfamily_ConA-like_lec_gl	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	68	0	0	44	8	15.38	-	-	-	T	137619148	C	T	137619148	3	4	281	1	0	0	0	0	1	0	0	0	3726	643	23	1	709	1	COL5A1	9	137619148	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	983579	137619148	3594283	617	31881										
C9orf37	0	genome.wustl.edu	37	chr9	140510469	140510471	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgggttcaaattccagttCtcctttagggcgaaggggtg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	9	140510469	140510471	CTC	-	DEL	C9orf37	ENST00000371417	human	ensembl	69_37n	-1	known	in_frame_del	c.183_181	p.E61in_frame_del	0.086:0.057:0.003	NULL	NULL	-	no_errors	C9orf37	HGNC	ENSG00000203993	19	0	0	4	2	33.33	-	-	-	-	140510471	CTC	-	140510469	7	5	281	1	0	1	0	1	0	0	0	0	2504	912	32	0	351	0	C9orf37	9	140510469	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	2891321	140510469	702962	618	31882										
PFKP	0	genome.wustl.edu	37	chr10	3175478	3175478	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaaggcgtgtttgactgcaGgaagaacgtgctgggtcaca	14	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	3175478	3175478	G	T	SNP	PFKP	ENST00000433193	human	ensembl	69_37n	1	known	nonsense	c.52	p.G18*	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PFKP	HGNC	ENSG00000067057	96	0	0	34	14	29.17	-	-	-	T	3175478	G	T	3175478	4	4	281	1	0	0	0	0	0	1	0	0	11840	1000	35	4	2068	4	PFKP	10	3175478	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09		3175478	132359269	619	31883										
ITIH2	0	genome.wustl.edu	37	chr10	7785211	7785211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatcctcaacctggtttctgAcccagaatcaggtaaaataa	6	10	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	7785211	7785211	A	G	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	missense	c.2198	p.D733G	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	173	0	0	121	20	14.18	-	-	-	G	7785211	A	G	7785211	3	3	281	1	0	0	0	0	1	0	0	0	7958	275	10	5	2264	5	ITIH2	10	7785211	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4609733	7785211	127749536	620	31884										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	95	0	0	84	19	18.45	-	-	-	G	8115875	-	G	8115874	7	5	281	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	330663	8115874	127418873	621	31885										
PHYH	0	genome.wustl.edu	37	chr10	13325835	13325835	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgtggaacattttgttaactCccccctagaacaagaggcaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	13325835	13325835	C	-	DEL	PHYH	ENST00000263038	human	ensembl	69_37n	-1	known	frame_shift_del	c.683	p.G228fs	0.987	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537	416	0	0	271	64	18.88	-	-	-	-	13325835	C	-	13325835	7	5	281	1	0	1	0	1	0	0	0	0	11938	855	30	0	345	0	PHYH	10	13325835	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	5209961	13325835	122208912	622	31886										
HSPA14	0	genome.wustl.edu	37	chr10	14912635	14912635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ataaaaaagaaaatggattaCgtgatatattagctgttctt	7	3	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	14912635	14912635	C	T	SNP	HSPA14	ENST00000378372	human	ensembl	69_37n	1	known	missense	c.1420	p.R474C	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	41	0	0	27	11	28.95	-	-	-	T	14912635	C	T	14912635	3	4	281	1	0	0	0	0	1	0	0	0	7460	536	19	1	1470	1	HSPA14	10	14912635	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1586800	14912635	120622112	623	31887										
DNAJC1	0	genome.wustl.edu	37	chr10	22193536	22193536	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatttagcataaaactgcccAgcatccttaagaaaaaaagt	5	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	22193536	22193536	A	G	SNP	DNAJC1	ENST00000376980	human	ensembl	69_37n	-1	known	silent	c.735	p.A245	1.000	NULL	pfam_DnaJ_N,pfam_SANT/Myb,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC1	HGNC	ENSG00000136770	65	0	0	52	11	17.46	-	-	-	G	22193536	A	G	22193536	2	3	281	1	0	0	0	0	0	0	0	1	4663	175	7	5		5	DNAJC1	10	22193536	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	7280901	22193536	113341211	624	31888										
ARMC3	0	genome.wustl.edu	37	chr10	23235198	23235198	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgctttaaaaggtttggaTttttttcagtttatctttct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	23235198	23235198	T	-	DEL	ARMC3	ENST00000465729	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARMC3	HGNC	ENSG00000165309	105	0	0	68	26	27.66	-	-	-	-	23235198	T	-	23235198	6	5	281	0	1	1	0	1	0	0	0	0	956	1508	52	0		0	ARMC3	10	23235198	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1041662	23235198	112299549	625	31889										
ANKRD26	0	genome.wustl.edu	37	chr10	27355175	27355175	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttctaagccttttcttttcTttttttttttgcactatcct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	27355175	27355175	T	-	DEL	ANKRD26	ENST00000473304	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD26	HGNC	ENSG00000107890	8	0	0	10	3	21.43	-	-	-	-	27355175	T	-	27355175	6	5	281	0	1	1	0	1	0	0	0	0	654	1624	56	0		0	ANKRD26	10	27355175	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	4119977	27355175	108179572	626	31890										
ARMC4	0	genome.wustl.edu	37	chr10	28260103	28260103	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcttggtcatttgattcctcCaaaaattaatttggttcttc	5	8	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	28260103	28260103	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	nonsense	c.1076	p.W359*	0.001	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	189	0	0	112	25	18.25	-	-	-	T	28260103	C	T	28260103	4	4	281	1	0	0	0	0	0	1	0	0	957	595	21	4	2110	4	ARMC4	10	28260103	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	904928	28260103	107274644	627	31891										
PARD3	0	genome.wustl.edu	37	chr10	34739262	34739262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacctgttcttgtttctccaGccacttgcccaccattgggt	7	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	34739262	34739262	G	A	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	silent	c.697	p.L233	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	120	0	0	96	23	19.33	-	-	-	A	34739262	G	A	34739262	2	1	281	1	0	0	0	0	0	0	0	1	11516	962	34	4		4	PARD3	10	34739262	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6479159	34739262	100795485	628	31892										
BMS1	0	genome.wustl.edu	37	chr10	43292515	43292515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcagaggaagaagactcagAaaatgaagaggctattagaa	12	4	1	7			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	43292515	43292515	A	T	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	missense	c.1823	p.E608V	0.522	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	321	0	0	183	136	42.5	-	-	-	T	43292515	A	T	43292515	3	4	281	1	0	0	0	0	1	0	0	0	1477	246	9	5	1857	5	BMS1	10	43292515	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	8553253	43292515	92242232	629	31893										
FRMPD2	0	genome.wustl.edu	37	chr10	49383976	49383976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atatggcacactggtgttaaTgccaccctgaaaaacacaac	7	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	49383976	49383976	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2902	p.I968V	0.060	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	18	0	0	16	6	27.27	-	-	-	C	49383976	T	C	49383976	3	2	281	1	0	0	0	0	1	0	0	0	6107	1464	51	5	1055	5	FRMPD2	10	49383976	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	6091461	49383976	86150771	630	31894										
AGAP6	0	genome.wustl.edu	37	chr10	51769654	51769654	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgagctgtccctgggccagcAgctgctgcgggccaccgctg	15	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	51769654	51769654	A	T	SNP	AGAP6	ENST00000374056	human	ensembl	69_37n	1	known	missense	c.1769	p.Q590L	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149	79	0	0	59	9	13.24	-	-	-	T	51769654	A	T	51769654	3	4	281	1	0	0	0	0	1	0	0	0	372	188	7	5	1799	5	AGAP6	10	51769654	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2385678	51769654	83765093	631	31895										
ANK3	0	genome.wustl.edu	37	chr10	61834861	61834863	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agttcaggttggaatggcttCtcctcaggcacatctgtctg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	61834861	61834863	CTC	-	DEL	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	in_frame_del	c.5778_5776	p.E1926in_frame_del	1.000:1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	146	0	0	75	52	40.94	-	-	-	-	61834863	CTC	-	61834861	7	5	281	1	0	1	0	1	0	0	0	0	622	912	32	0	7696	0	ANK3	10	61834861	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	10065207	61834861	73699886	632	31896										
RHOBTB1	0	genome.wustl.edu	37	chr10	62631222	62631222	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgattggtttctgttttttgTtttttttctcttcctcttca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	62631222	62631222	T	-	DEL	RHOBTB1	ENST00000461910	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RHOBTB1	HGNC	ENSG00000072422	108	0	0	73	10	11.76	-	-	-	-	62631222	T	-	62631222	6	5	281	0	1	1	0	1	0	0	0	0	13417	1740	60	0		0	RHOBTB1	10	62631222	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	796361	62631222	72903525	633	31897										
MYPN	0	genome.wustl.edu	37	chr10	69933947	69933947	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgttttgaactccaatgctCccccagcggtgacaacatcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	69933947	69933947	C	-	DEL	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	frame_shift_del	c.2098	p.P701fs	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	262	0	0	154	50	24.27	-	-	-	-	69933947	C	-	69933947	7	5	281	1	0	1	0	1	0	0	0	0	10170	855	30	0	2136	0	MYPN	10	69933947	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	7302725	69933947	65600800	634	31898										
DNA2	0	genome.wustl.edu	37	chr10	70231698	70231698	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acagaaagcttagaaaagggAaaaaggcgcgagcctgcgca	13	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	70231698	70231698	A	G	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.182	p.F61S	0.008	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	18	0	0	16	5	23.81	-	-	-	G	70231698	A	G	70231698	3	3	281	1	0	0	0	0	1	0	0	0	4632	246	9	5	3342	5	DNA2	10	70231698	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	297751	70231698	65303049	635	31899										
CDH23	0	genome.wustl.edu	37	chr10	73567447	73567447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgacctggttgctgacctcaCactgcaggaggtgcgcgttg	14	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	73567447	73567447	C	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.8492	p.T2831I	0.990	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	38	0	0	32	5	13.51	-	-	-	T	73567447	C	T	73567447	3	4	281	1	0	0	0	0	1	0	0	0	3137	478	17	4	9058	4	CDH23	10	73567447	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3335749	73567447	61967300	636	31900										
SPOCK2	0	genome.wustl.edu	37	chr10	73822556	73822556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgtcagcctcgcctgcctCgccctcctcctcctcggcct	8	22	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	73822556	73822556	C	T	SNP	SPOCK2	ENST00000317376	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413K	1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742	61	0	0	30	21	41.18	-	-	-	T	73822556	C	T	73822556	3	4	281	1	0	0	0	0	1	0	0	0	15171	893	31	1	41	1	SPOCK2	10	73822556	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	255109	73822556	61712191	637	31901										
P4HA1	0	genome.wustl.edu	37	chr10	74828607	74828607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggaagaatgatcttacctgGaagattaccctttgagatgg	11	6	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	74828607	74828607	G	A	SNP	P4HA1	ENST00000263556	human	ensembl	69_37n	-1	known	missense	c.460	p.P154S	1.000	pfam_Pro_4_hyd_alph_N	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884	177	0	0	138	38	21.47	-	-	-	A	74828607	G	A	74828607	3	1	281	1	0	0	0	0	1	0	0	0	11429	1174	41	2	1263	2	P4HA1	10	74828607	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1006051	74828607	60706140	638	31902										
TTC18	0	genome.wustl.edu	37	chr10	75114498	75114498	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaagtaactttaccaaatcAtatccctctgtcacggtgat	5	10	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75114498	75114498	A	G	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	silent	c.57	p.Y19	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	73	0	0	84	25	22.73	-	-	-	G	75114498	A	G	75114498	2	3	281	1	0	0	0	0	0	0	0	1	16782	224	8	5		5	TTC18	10	75114498	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	285891	75114498	60420249	639	31903										
ANXA7	0	genome.wustl.edu	37	chr10	75147509	75147509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgatcattggaacggttggCcaccacatccacaattgcct	8	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75147509	75147509	C	T	SNP	ANXA7	ENST00000372919	human	ensembl	69_37n	-1	known	missense	c.637	p.A213T	0.968	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVII,prints_AnnexinIV	-	no_errors	ANXA7	HGNC	ENSG00000138279	337	0	0	254	43	14.48	-	-	-	T	75147509	C	T	75147509	3	4	281	1	0	0	0	0	1	0	0	0	722	739	26	4	857	4	ANXA7	10	75147509	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	33011	75147509	60387238	640	31904										
MYOZ1	0	genome.wustl.edu	37	chr10	75391841	75391841	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accaggggttcactcagcaaGggccccaggtcaaacttggg	13	12	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75391841	75391841	G	A	SNP	MYOZ1	ENST00000359322	human	ensembl	69_37n	-1	known	silent	c.747	p.P249	0.997	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791	123	0	0	78	33	29.46	-	-	-	A	75391841	G	A	75391841	2	1	281	1	0	0	0	0	0	0	0	1	10167	987	35	4		4	MYOZ1	10	75391841	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	244332	75391841	60142906	641	31905										
MYOZ1	0	genome.wustl.edu	37	chr10	75394384	75394385	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgtccggcagagccactgINSccccctgcctggctgccgcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75394384	75394385	-	C	INS	MYOZ1	ENST00000359322	human	ensembl	69_37n	-1	known	frame_shift_ins	c.360_359	p.S121fs	0.893:0.790	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791	105	0	0	71	15	17.44	-	-	-	C	75394385	-	C	75394384	7	5	281	1	0	1	1	0	0	0	0	0	10167	1306	46	0	551	0	MYOZ1	10	75394384	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2543	75394384	60140363	642	31906										
KIAA0913	0	genome.wustl.edu	37	chr10	75556970	75556970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgcttggcacttggcagtcGtggaggctataatggacggg	16	9	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75556970	75556970	G	A	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.3374	p.R1125H	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	52	0	0	19	7	26.92	-	-	-	A	75556970	G	A	75556970	3	1	281	1	0	0	0	0	1	0	0	0	8252	1145	40	1	3440	1	KIAA0913	10	75556970	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	162586	75556970	59977777	643	31907										
KIAA0913	0	genome.wustl.edu	37	chr10	75557732	75557732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accgcaacctgcacctttgcGccttcgagattgggctttat	9	13	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75557732	75557732	G	A	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.3856	p.A1286T	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	75	0	0	32	25	43.86	-	-	-	A	75557732	G	A	75557732	3	1	281	1	0	0	0	0	1	0	0	0	8252	1087	38	1	3930	1	KIAA0913	10	75557732	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	762	75557732	59977015	644	31908										
NDST2	0	genome.wustl.edu	37	chr10	75563023	75563024	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacaagacagcggttctgcaINSgggagcgtagtgccagaggg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	75563023	75563024	-	T	INS	NDST2	ENST00000309979	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2237_2236	p.L746fs	1.000:1.000	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST2	HGNC	ENSG00000166507	75	0	0	41	5	10.87	-	-	-	T	75563024	-	T	75563023	7	5	281	1	0	1	1	0	0	0	0	0	10328	188	7	0	430	0	NDST2	10	75563023	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5291	75563023	59971724	645	31909										
ZMIZ1	0	genome.wustl.edu	37	chr10	81060562	81060562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaccaactggcccgcctcgGtgcaggtcagcgtgaacgcc	12	16	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	81060562	81060562	G	A	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.1882	p.V628M	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	20	0	0	9	3	25	-	-	-	A	81060562	G	A	81060562	3	1	281	1	0	0	0	0	1	0	0	0	17792	1261	44	4	1932	4	ZMIZ1	10	81060562	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5497539	81060562	54474185	646	31910										
RGR	0	genome.wustl.edu	37	chr10	86018398	86018398	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaggaccgaaccaagtgagcCtgccaccctggagtgagccc	12	14	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	86018398	86018398	C	A	SNP	RGR	ENST00000479725	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.094	-	-	-	no_errors	RGR	HGNC	ENSG00000148604	47	0	0	18	6	25	-	-	-	A	86018398	C	A	86018398	1	1	281	0	1	0	0	0	0	0	0	0	13375	696	24	4		4	RGR	10	86018398	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4957836	86018398	49516349	647	31911										
GRID1	0	genome.wustl.edu	37	chr10	87484325	87484325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgctgattttctcctcggGcttcttaattagaatcccca	7	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	87484325	87484325	G	A	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.1642	p.P548S	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	68	0	0	41	20	32.79	-	-	-	A	87484325	G	A	87484325	3	1	281	1	0	0	0	0	1	0	0	0	6822	1203	42	4	1411	4	GRID1	10	87484325	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1465927	87484325	48050422	648	31912										
LIPN	0	genome.wustl.edu	37	chr10	90537856	90537856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctcgtaacaccccaggatGtggccaggatactccctcaa	8	15	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	90537856	90537856	G	A	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.1054	p.V352M	0.999	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	91	0	0	61	8	11.59	-	-	-	A	90537856	G	A	90537856	3	1	281	1	0	0	0	0	1	0	0	0	8884	1377	48	4	1088	4	LIPN	10	90537856	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3053531	90537856	44996891	649	31913										
ACTA2	0	genome.wustl.edu	37	chr10	90700995	90700995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaggcctcaccagtagtaaCgaaggaatagccacgctcag	10	12	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	90700995	90700995	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	69_37n	-1	known	missense	c.607	p.V203I	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA2	HGNC	ENSG00000107796	82	0	0	45	13	22.41	-	-	-	T	90700995	C	T	90700995	3	4	281	1	0	0	0	0	1	0	0	0	192	536	19	1	542	1	ACTA2	10	90700995	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	163139	90700995	44833752	650	31914										
KIF20B	0	genome.wustl.edu	37	chr10	91478521	91478521	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgactcactattttcaaagTttttttaatggtaaagggaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	91478521	91478521	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	frame_shift_del	c.1326	p.F444fs	0.995	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	81	0	0	54	11	16.92	-	-	-	-	91478521	T	-	91478521	7	5	281	1	0	1	0	1	0	0	0	0	8339	1722	60	0	1368	0	KIF20B	10	91478521	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	777526	91478521	44056226	651	31915										
RPP30	0	genome.wustl.edu	37	chr10	92655162	92655162	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatttatattatgaaactccTttttttacatttatctaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	92655162	92655162	T	-	DEL	RPP30	ENST00000487998	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RPP30	HGNC	ENSG00000148688	69	0	0	39	14	25.93	-	-	-	-	92655162	T	-	92655162	6	5	281	0	1	1	0	1	0	0	0	0	13698	1624	56	0		0	RPP30	10	92655162	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1176641	92655162	42879585	652	31916										
HECTD2	0	genome.wustl.edu	37	chr10	93257913	93257915	+	In_Frame_Del	DEL	GAA	GAA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatcacatgaaggcaatgttGaagaagatttctattcaaca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	93257913	93257915	GAA	-	DEL	HECTD2	ENST00000446394	human	ensembl	69_37n	1	known	in_frame_del	c.1741_1743	p.E582in_frame_del	1.000:1.000:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	134	0	0	135	33	19.64	-	-	-	-	93257915	GAA	-	93257913	7	5	281	1	0	1	0	1	0	0	0	0	7091	1291	45	0	1815	0	HECTD2	10	93257913	In_Frame_Del	DEL	GAA	TCGA-AN-A0AK-01A-21W-A019-09	602751	93257913	42276834	653	31917										
PLCE1	0	genome.wustl.edu	37	chr10	95791727	95791727	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacttccctgataattgtgaTgatgtagaagaagacgcttt	10	6	0	6			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	95791727	95791727	T	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	silent	c.924	p.D308	1.000	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	304	0	0	227	38	14.34	-	-	-	C	95791727	T	C	95791727	2	2	281	1	0	0	0	0	0	0	0	1	12108	1461	51	5		5	PLCE1	10	95791727	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2533814	95791727	39743020	654	31918										
NOC3L	0	genome.wustl.edu	37	chr10	96117921	96117921	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtcatcttcatccatcataTctaaaggaagggcttcttct	6	10	7	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	96117921	96117921	T	A	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	missense	c.269	p.D90V	1.000	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	339	0	0	246	38	13.38	-	-	-	A	96117921	T	A	96117921	3	1	281	1	0	0	0	0	1	0	0	0	10586	1435	50	5	2209	5	NOC3L	10	96117921	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	326194	96117921	39416826	655	31919										
TBC1D12	0	genome.wustl.edu	37	chr10	96253157	96253157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atctgtggaagaagctttacGtcaccgacaagaatacgatg	10	8	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	96253157	96253157	G	A	SNP	TBC1D12	ENST00000225235	human	ensembl	69_37n	1	known	missense	c.1247	p.R416H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239	133	0	0	104	29	21.8	-	-	-	A	96253157	G	A	96253157	3	1	281	1	0	0	0	0	1	0	0	0	15693	1145	40	1	1261	1	TBC1D12	10	96253157	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	135236	96253157	39281590	656	31920										
CYP2C19	0	genome.wustl.edu	37	chr10	96612637	96612637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caatggatttgcttctgtccCgcccttctatcagctgtgct	8	13	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	96612637	96612637	C	T	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.1439	p.P480L	0.723	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	368	0	0	238	82	25.47	-	-	-	T	96612637	C	T	96612637	3	4	281	1	0	0	0	0	1	0	0	0	4197	652	23	1	1473	1	CYP2C19	10	96612637	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	359480	96612637	38922110	657	31921										
PDLIM1	0	genome.wustl.edu	37	chr10	97028544	97028544	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagaacttacctggggttcAgaggctaaattcatcttgta	9	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	97028544	97028544	A	G	SNP	PDLIM1	ENST00000329399	human	ensembl	69_37n	-1	known	silent	c.324	p.S108	0.890	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM1	HGNC	ENSG00000107438	124	0	0	69	15	17.86	-	-	-	G	97028544	A	G	97028544	2	3	281	1	0	0	0	0	0	0	0	1	11752	175	7	5		5	PDLIM1	10	97028544	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	415907	97028544	38506203	658	31922										
DNTT	0	genome.wustl.edu	37	chr10	98064268	98064268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcttcccatggatccaccacGagcgtcccacttgagccctc	7	18	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	98064268	98064268	G	A	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.14	p.R5Q	0.000	pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	65	0	0	44	17	27.42	-	-	-	A	98064268	G	A	98064268	3	1	281	1	0	0	0	0	1	0	0	0	4715	1058	37	1	16	1	DNTT	10	98064268	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1035724	98064268	37470479	659	31923										
LCOR	0	genome.wustl.edu	37	chr10	98709040	98709040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagaaagtctcagtcagaaCctagcgaacaaggtatggtt	10	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	98709040	98709040	C	T	SNP	LCOR	ENST00000356016	human	ensembl	69_37n	1	known	missense	c.226	p.P76S	1.000	NULL	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	LCOR	HGNC	ENSG00000196233	241	0	0	133	50	27.32	-	-	-	T	98709040	C	T	98709040	3	4	281	1	0	0	0	0	1	0	0	0	8743	507	18	4	228	4	LCOR	10	98709040	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	644772	98709040	36825707	660	31924										
MORN4	0	genome.wustl.edu	37	chr10	99379370	99379371	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccactcgccacgatattcctINSccccactggagtaggtgaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	99379370	99379371	-	C	INS	MORN4	ENST00000307450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.41_40	p.E14fs	1.000:1.000	smart_MORN	pfam_MORN,smart_MORN	-	no_errors	MORN4	HGNC	ENSG00000171160	136	0	0	79	20	20.2	-	-	-	C	99379371	-	C	99379370	7	5	281	1	0	1	1	0	0	0	0	0	9782	1551	54	0	415	0	MORN4	10	99379370	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	670330	99379370	36155377	661	31925										
SEC31B	0	genome.wustl.edu	37	chr10	102265865	102265865	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agagtacaaactgatccagcCgttgaaggaggcagcagaga	13	8	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	102265865	102265865	C	A	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.976	p.G326C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	194	0	0	136	45	24.86	-	-	-	A	102265865	C	A	102265865	3	1	281	1	0	0	0	0	1	0	0	0	14087	652	23	3	2635	3	SEC31B	10	102265865	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2886495	102265865	33268882	662	31926										
FBXW4	0	genome.wustl.edu	37	chr10	103371089	103371089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacgtggaggttgtaagacaGggcagcatagagatgcttgg	17	5	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	103371089	103371089	G	T	SNP	FBXW4	ENST00000331272	human	ensembl	69_37n	-1	known	missense	c.1198	p.L400M	0.772	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829	32	0	0	19	6	24	-	-	-	T	103371089	G	T	103371089	3	4	281	1	0	0	0	0	1	0	0	0	5813	991	35	4	44	4	FBXW4	10	103371089	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1105224	103371089	32163658	663	31927										
SORCS1	0	genome.wustl.edu	37	chr10	108536424	108536424	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgatcaataaactgctctcAatctccgggtctgtgagtaa	8	10	4	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	108536424	108536424	A	G	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	silent	c.753	p.I251	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	118	0	0	108	35	24.48	-	-	-	G	108536424	A	G	108536424	2	3	281	1	0	0	0	0	0	0	0	1	15019	126	5	5		5	SORCS1	10	108536424	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	5165335	108536424	26998323	664	31928										
NRAP	0	genome.wustl.edu	37	chr10	115348832	115348832	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccagcctccactgcttctgCcccccgctgctgaaatcaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	115348832	115348832	C	-	DEL	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	frame_shift_del	c.5119	p.A1707fs	0.001	NULL	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	75	0	0	46	7	12.96	-	-	-	-	115348832	C	-	115348832	7	5	281	1	0	1	0	1	0	0	0	0	10711	739	26	0	101	0	NRAP	10	115348832	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	6812408	115348832	20185915	665	31929										
KIAA1598	0	genome.wustl.edu	37	chr10	118661318	118661318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcatccttccaatttacggGgcccttcacctggctcaggt	9	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	118661318	118661318	G	A	SNP	KIAA1598	ENST00000392903	human	ensembl	69_37n	-1	known	missense	c.1631	p.P544L	0.524	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164	41	0	0	33	7	17.5	-	-	-	A	118661318	G	A	118661318	3	1	281	1	0	0	0	0	1	0	0	0	8298	1232	43	4	272	4	KIAA1598	10	118661318	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3312486	118661318	16873429	666	31930										
KCNK18	0	genome.wustl.edu	37	chr10	118969524	118969524	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccatcattgcccttattgTttttgcctacatttcctgtg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	118969524	118969524	T	-	DEL	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	frame_shift_del	c.869	p.F291fs	0.564	pfam_Ion_trans_2	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	135	0	0	82	23	21.9	-	-	-	-	118969524	T	-	118969524	7	5	281	1	0	1	0	1	0	0	0	0	8119	1725	60	0	879	0	KCNK18	10	118969524	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	308206	118969524	16565223	667	31931										
KCNK18	0	genome.wustl.edu	37	chr10	118969695	118969695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctccatttatatcatcgttgGaatggagattgtgttcattg	9	6	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	118969695	118969695	G	T	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.1040	p.G347V	1.000	pfam_Ion_trans_2	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	124	0	0	76	18	19.15	-	-	-	T	118969695	G	T	118969695	3	4	281	1	0	0	0	0	1	0	0	0	8119	1174	41	2	1050	2	KCNK18	10	118969695	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	171	118969695	16565052	668	31932										
INPP5F	0	genome.wustl.edu	37	chr10	121567481	121567481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgcccccggaacagccatTacctgtgaaatgtaatcgca	9	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	121567481	121567481	T	C	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	missense	c.1478	p.L493S	0.993	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	124	0	0	72	19	20.88	-	-	-	C	121567481	T	C	121567481	3	2	281	1	0	0	0	0	1	0	0	0	7812	1764	61	5	1528	5	INPP5F	10	121567481	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2597786	121567481	13967266	669	31933										
OAT	0	genome.wustl.edu	37	chr10	126091634	126091634	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ataaagagaacctattggggAaaaaaaatacccctattagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154	153	0	0	106	24	18.46	-	-	-	-	126091634	A	-	126091634	6	5	281	0	1	1	0	1	0	0	0	0	10876	261	9	0		0	OAT	10	126091634	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	4524153	126091634	9443113	670	31934										
ZRANB1	0	genome.wustl.edu	37	chr10	126671767	126671767	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggagcaagcttggagcagacGcacatttttgtactggcaca	12	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	126671767	126671767	G	A	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	silent	c.1572	p.T524	0.940	pfam_OTU,pfscan_OTU	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	194	0	0	99	69	41.07	-	-	-	A	126671767	G	A	126671767	2	1	281	1	0	0	0	0	0	0	0	1	18315	1074	38	1		1	ZRANB1	10	126671767	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	580133	126671767	8862980	671	31935										
FRG2B	0	genome.wustl.edu	37	chr10	135438865	135438865	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatctgctgtgcccacaccTgggctaggtcttgataaaca	11	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	10	135438865	135438865	T	C	SNP	FRG2B	ENST00000443774	human	ensembl	69_37n	-1	known	missense	c.578	p.Q193R	0.591	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	104	0	0	53	9	14.52	-	-	-	C	135438865	T	C	135438865	3	2	281	1	0	0	0	0	1	0	0	0	6096	1580	55	5	264	5	FRG2B	10	135438865	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	8767098	135438865	95882	672	31936										
KRTAP5-1	0	genome.wustl.edu	37	chr11	1606216	1606217	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcccccacaagagccacagINSccccccttgcagcctccaca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	1606216	1606217	-	C	INS	KRTAP5-1	ENST00000382171	human	ensembl	69_37n	-1	known	frame_shift_ins	c.264_263	p.C89fs	0.992:0.975	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869	96	0	0	87	11	11.22	-	-	-	C	1606217	-	C	1606216	7	5	281	1	0	1	1	0	0	0	0	0	8612	958	34	0	576	0	KRTAP5-1	11	1606216	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09		1606216	133400300	673	31937										
NUP98	0	genome.wustl.edu	37	chr11	3723898	3723898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ataggtgacagacttttcacGagggactaggcctagttgcc	12	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	3723898	3723898	G	A	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.3307	p.R1103C	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	125	0	0	101	18	15.13	-	-	-	A	3723898	G	A	3723898	3	1	281	1	0	0	0	0	1	0	0	0	10846	1058	37	1	2139	1	NUP98	11	3723898	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2117682	3723898	131282618	674	31938										
OR51E2	0	genome.wustl.edu	37	chr11	4703006	4703006	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctcccacagcctgcaagtcCttgtcacagctgatcttgaa	7	15	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	4703006	4703006	C	A	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.936	p.K312N	0.908	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	203	0	0	184	41	18.22	-	-	-	A	4703006	C	A	4703006	3	1	281	1	0	0	0	0	1	0	0	0	11168	680	24	4	30	4	OR51E2	11	4703006	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	979108	4703006	130303510	675	31939										
OR51G2	0	genome.wustl.edu	37	chr11	4936640	4936640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaaaagatgcccaggactGtagggagagtgcaaagggag	15	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	4936640	4936640	G	A	SNP	OR51G2	ENST00000322013	human	ensembl	69_37n	-1	known	missense	c.254	p.T85I	0.924	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51G2	HGNC	ENSG00000176893	108	0	0	91	22	19.47	-	-	-	A	4936640	G	A	4936640	3	1	281	1	0	0	0	0	1	0	0	0	11172	1377	48	4	694	4	OR51G2	11	4936640	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	233634	4936640	130069876	676	31940										
OR51A2	0	genome.wustl.edu	37	chr11	4976651	4976651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaattcctgggcaaagcagGcactagaagaagtttcaggg	13	7	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	4976651	4976651	G	A	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	missense	c.293	p.A98V	0.962	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	590	1	0.17	604	151	19.97	-	-	-	A	4976651	G	A	4976651	3	1	281	1	0	0	0	0	1	0	0	0	11159	1203	42	4	650	4	OR51A2	11	4976651	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	40011	4976651	130029865	677	31941										
DNHD1	0	genome.wustl.edu	37	chr11	6540945	6540945	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagggtacagcacaagcaacTggagcagaagctgaagcaag	14	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	6540945	6540945	T	C	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.1508	p.L503P	0.982	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	131	0	0	115	33	22	-	-	-	C	6540945	T	C	6540945	3	2	281	1	0	0	0	0	1	0	0	0	4703	1580	55	5	1530	5	DNHD1	11	6540945	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1564294	6540945	128465571	678	31942										
STK33	0	genome.wustl.edu	37	chr11	8462223	8462225	+	Splice_Site	DEL	ACA	ACA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtacatttagcaggctacttAcaacatgtacattacgacgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	8462223	8462225	ACA	-	DEL	STK33	ENST00000315204	human	ensembl	69_37n	-1	known	splice_site_del	c.947+2_947+1	e9-1	1.000:1.000:1.000	-	-	-	no_errors	STK33	HGNC	ENSG00000130413	13	0	0	12	6	33.33	-	-	-	-	8462225	ACA	-	8462223	8	5	281	1	0	1	0	1	0	0	1	0	15391	405	14	0	615	0	STK33	11	8462223	Splice_Site	DEL	ACA	TCGA-AN-A0AK-01A-21W-A019-09	1921278	8462223	126544293	679	31943										
DENND5A	0	genome.wustl.edu	37	chr11	9165779	9165779	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaactaggatccgctccaGgcttccatcatccatgccct	6	18	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	9165779	9165779	G	A	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	silent	c.3169	p.L1057	1.000	superfamily_Lipase_LipOase,pfscan_LipOase_LH2	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	78	0	0	70	13	15.66	-	-	-	A	9165779	G	A	9165779	2	1	281	1	0	0	0	0	0	0	0	1	4472	991	35	4		4	DENND5A	11	9165779	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	703556	9165779	125840737	680	31944										
ARNTL	0	genome.wustl.edu	37	chr11	13408207	13408207	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatcaagtagtcccagtaaTgatgaggcagcaatggctgt	13	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	13408207	13408207	T	C	SNP	ARNTL	ENST00000403290	human	ensembl	69_37n	1	known	silent	c.1785	p.N595	0.773	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794	195	0	0	188	33	14.93	-	-	-	C	13408207	T	C	13408207	2	2	281	1	0	0	0	0	0	0	0	1	971	1461	51	5		5	ARNTL	11	13408207	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	4242428	13408207	121598309	681	31945										
SOX6	0	genome.wustl.edu	37	chr11	16068212	16068213	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcactgtatcctgatccccINSaaaaagggcaggggagttga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	16068212	16068213	-	A	INS	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1471_1470	p.G490fs	1.000:1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	103	0	0	96	16	14.29	-	-	-	A	16068213	-	A	16068212	7	5	281	1	0	1	1	0	0	0	0	0	15044	594	21	0	1035	0	SOX6	11	16068212	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2660005	16068212	118938304	682	31946										
PIK3C2A	0	genome.wustl.edu	37	chr11	17111376	17111376	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagggttactccacccaagAaaaaattctcccgcagagat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	17111376	17111376	A	-	DEL	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	frame_shift_del	c.4970	p.F1657fs	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	299	0	0	330	57	14.58	-	-	-	-	17111376	A	-	17111376	7	5	281	1	0	1	0	1	0	0	0	0	11983	246	9	0	94	0	PIK3C2A	11	17111376	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1043164	17111376	117895140	683	31947										
KCNC1	0	genome.wustl.edu	37	chr11	17793278	17793278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttctgcctggagacccacGagcgcttcaaccccatcgtg	9	17	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	17793278	17793278	G	A	SNP	KCNC1	ENST00000265969	human	ensembl	69_37n	1	known	missense	c.637	p.E213K	1.000	prints_K_chnl_volt-dep_Kv3.1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	138	0	0	106	35	24.82	-	-	-	A	17793278	G	A	17793278	3	1	281	1	0	0	0	0	1	0	0	0	8068	1059	37	1	643	1	KCNC1	11	17793278	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	681902	17793278	117213238	684	31948										
SVIP	0	genome.wustl.edu	37	chr11	22848802	22848803	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtagcaatttgtttttctaINSttttttcctttttctttctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	22848802	22848803	-	T	INS	SVIP	ENST00000354193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.170_169	p.I57fs	0.996:0.987	NULL	NULL	-	no_errors	SVIP	HGNC	ENSG00000198168	156	0	0	112	50	30.86	-	-	-	T	22848803	-	T	22848802	7	5	281	1	0	1	1	0	0	0	0	0	15513	449	16	0	71	0	SVIP	11	22848802	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5055524	22848802	112157714	685	31949										
BDNF	0	genome.wustl.edu	37	chr11	27679478	27679478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagggcccgcacgtacgactGggtagttcggcactgggagt	16	10	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	27679478	27679478	G	T	SNP	BDNF	ENST00000438929	human	ensembl	69_37n	-1	known	missense	c.880	p.Q294K	1.000	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697	294	0	0	229	59	20.49	-	-	-	T	27679478	G	T	27679478	3	4	281	1	0	0	0	0	1	0	0	0	1398	1357	47	4	113	4	BDNF	11	27679478	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4830676	27679478	107327038	686	31950										
KIF18A	0	genome.wustl.edu	37	chr11	28113051	28113051	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taagagatcacgaatctgttCattatataccttaaaataaa	4	6	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	28113051	28113051	C	T	SNP	KIF18A	ENST00000263181	human	ensembl	69_37n	-1	known	missense	c.493	p.E165K	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621	128	0	0	84	59	41.26	-	-	-	T	28113051	C	T	28113051	3	4	281	1	0	0	0	0	1	0	0	0	8332	835	29	2	2259	2	KIF18A	11	28113051	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	433573	28113051	106893465	687	31951										
CAT	0	genome.wustl.edu	37	chr11	34482536	34482536	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaacttgttatgcagaaggAaaaaaaaaagatattattac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	34482536	34482536	A	-	DEL	CAT	ENST00000530343	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CAT	HGNC	ENSG00000121691	30	0	0	22	19	43.18	-	-	-	-	34482536	A	-	34482536	6	5	281	0	1	1	0	1	0	0	0	0	2711	261	9	0		0	CAT	11	34482536	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	6369485	34482536	100523980	688	31952										
CD44	0	genome.wustl.edu	37	chr11	35218403	35218405	+	In_Frame_Del	DEL	ACA	ACA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtcaaagaatcatcttcacAcaacaacacaaatggctggt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	35218403	35218405	ACA	-	DEL	CD44	ENST00000428726	human	ensembl	69_37n	1	known	in_frame_del	c.778_780	p.T262in_frame_del	0.995:0.993:0.986	NULL	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_CD44_antigen,prints_Link	-	no_errors	CD44	HGNC	ENSG00000026508	70	0	0	65	13	16.67	-	-	-	-	35218405	ACA	-	35218403	7	5	281	1	0	1	0	1	0	0	0	0	3046	159	6	0	800	0	CD44	11	35218403	In_Frame_Del	DEL	ACA	TCGA-AN-A0AK-01A-21W-A019-09	735867	35218403	99788113	689	31953										
PRDM11	0	genome.wustl.edu	37	chr11	45246195	45246195	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagccttcatcattcaaggcCgacagtcctgccgaggcctc	10	15	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	45246195	45246195	C	T	SNP	PRDM11	ENST00000263765	human	ensembl	69_37n	1	known	silent	c.1272	p.A424	0.778	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485	352	0	0	195	130	40	-	-	-	T	45246195	C	T	45246195	2	4	281	1	0	0	0	0	0	0	0	1	12533	639	23	1		1	PRDM11	11	45246195	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	10027792	45246195	89760321	690	31954										
SYT13	0	genome.wustl.edu	37	chr11	45274267	45274267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcctccgtcgtggttgctgGtcacagctgcaggcaaggag	15	11	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	45274267	45274267	G	A	SNP	SYT13	ENST00000020926	human	ensembl	69_37n	-1	known	missense	c.551	p.T184I	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT13	HGNC	ENSG00000019505	99	0	0	67	11	14.1	-	-	-	A	45274267	G	A	45274267	3	1	281	1	0	0	0	0	1	0	0	0	15561	1261	44	4	741	4	SYT13	11	45274267	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	28072	45274267	89732249	691	31955										
CHST1	0	genome.wustl.edu	37	chr11	45671375	45671375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgggcaaaggccacgatgtCgtaggagaggcggaagcgcc	17	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	45671375	45671375	C	T	SNP	CHST1	ENST00000308064	human	ensembl	69_37n	-1	known	missense	c.1099	p.D367N	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264	28	0	0	24	4	14.29	-	-	-	T	45671375	C	T	45671375	3	4	281	1	0	0	0	0	1	0	0	0	3426	884	31	1	140	1	CHST1	11	45671375	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	397108	45671375	89335141	692	31956										
SLC35C1	0	genome.wustl.edu	37	chr11	45832724	45832724	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtgcccagacagtgctggcCgtgctctactacgaggagac	13	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	45832724	45832724	C	T	SNP	SLC35C1	ENST00000314134	human	ensembl	69_37n	1	known	silent	c.933	p.A311	0.707	pfam_DUF250,pfam_UAA	pfam_DUF250,pfam_UAA,pfam_DMT	-	no_errors	SLC35C1	HGNC	ENSG00000181830	17	0	0	13	4	23.53	-	-	-	T	45832724	C	T	45832724	2	4	281	1	0	0	0	0	0	0	0	1	14668	639	23	1		1	SLC35C1	11	45832724	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	161349	45832724	89173792	693	31957										
F2	0	genome.wustl.edu	37	chr11	46747680	46747680	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcgtgtggtgctatgtggcCgggaagcctggcgactttgg	19	8	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	46747680	46747680	C	T	SNP	F2	ENST00000311907	human	ensembl	69_37n	1	known	silent	c.831	p.A277	0.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pirsf_Peptidase_S1A_prothrombin,pfscan_Kringle	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	25	0	0	21	5	19.23	-	-	-	T	46747680	C	T	46747680	2	4	281	1	0	0	0	0	0	0	0	1	5379	639	23	1		1	F2	11	46747680	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	914956	46747680	88258836	694	31958										
FNBP4	0	genome.wustl.edu	37	chr11	47738894	47738894	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccataacatttatagtttAtttgacaataaaactggtta	4	7	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	47738894	47738894	A	T	SNP	FNBP4	ENST00000526109	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FNBP4	HGNC	ENSG00000109920	46	0	0	60	11	15.49	-	-	-	T	47738894	A	T	47738894	1	4	281	0	1	0	0	0	0	0	0	0	6013	464	16	5		5	FNBP4	11	47738894	RNA	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	991214	47738894	87267622	695	31959										
OR5D16	0	genome.wustl.edu	37	chr11	55606403	55606403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aattaacccaaaattgcataCccccatgtattttttcctca	2	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	55606403	55606403	C	T	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.176	p.T59I	0.952	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	534	0	0	475	99	17.22	-	-	-	T	55606403	C	T	55606403	3	4	281	1	0	0	0	0	1	0	0	0	11229	507	18	4	178	4	OR5D16	11	55606403	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7867509	55606403	79400113	696	31960										
OR5J2	0	genome.wustl.edu	37	chr11	55944371	55944372	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttgtgaaggcaacaatttcINStttctctgcttgcatggtac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	55944371	55944372	-	T	INS	OR5J2	ENST00000312298	human	ensembl	69_37n	1	known	frame_shift_ins	c.278_279	p.S95fs	0.003:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	210	0	0	204	45	18.07	-	-	-	T	55944372	-	T	55944371	7	5	281	1	0	1	1	0	0	0	0	0	11238	913	32	0	280	0	OR5J2	11	55944371	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	337968	55944371	79062145	697	31961										
OR5M1	0	genome.wustl.edu	37	chr11	56380045	56380045	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaagcctaaactgcaatttTatgaaaggattttcccctaa	5	9	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	56380045	56380045	T	C	SNP	OR5M1	ENST00000526538	human	ensembl	69_37n	-1	known	missense	c.934	p.K312E	0.005	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M1	HGNC	ENSG00000255012	265	0	0	172	104	37.68	-	-	-	C	56380045	T	C	56380045	3	2	281	1	0	0	0	0	1	0	0	0	11245	1763	61	5	17	5	OR5M1	11	56380045	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	435674	56380045	78626471	698	31962										
ZDHHC5	0	genome.wustl.edu	37	chr11	57466427	57466427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttcctgtcagccaggctgGcccagcaacgggaagctgag	13	14	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	57466427	57466427	G	A	SNP	ZDHHC5	ENST00000287169	human	ensembl	69_37n	1	known	missense	c.1519	p.A507T	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599	87	0	0	58	14	19.44	-	-	-	A	57466427	G	A	57466427	3	1	281	1	0	0	0	0	1	0	0	0	17714	1203	42	4	1557	4	ZDHHC5	11	57466427	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1086382	57466427	77540089	699	31963										
SCGB2A1	0	genome.wustl.edu	37	chr11	61976233	61976233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgatggtcctcatgctggcGgccctcctcctgcactgcta	10	16	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	61976233	61976233	G	A	SNP	SCGB2A1	ENST00000244930	human	ensembl	69_37n	1	known	silent	c.30	p.A10	0.004	pfam_Uteroglobin-like_superfam	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB2A1	HGNC	ENSG00000124939	153	0	0	112	23	17.04	-	-	-	A	61976233	G	A	61976233	2	1	281	1	0	0	0	0	0	0	0	1	13986	1103	39	1		1	SCGB2A1	11	61976233	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4509806	61976233	73030283	700	31964										
EHD1	0	genome.wustl.edu	37	chr11	64621973	64621973	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccagatcttccctagcacGgtgttggggagcttggactt	12	10	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	64621973	64621973	G	T	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.1437	p.T479	0.241	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	43	0	0	16	7	30.43	-	-	-	T	64621973	G	T	64621973	2	4	281	1	0	0	0	0	0	0	0	1	5012	1103	39	3		3	EHD1	11	64621973	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2645740	64621973	70384543	701	31965										
CATSPER1	0	genome.wustl.edu	37	chr11	65793668	65793668	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcgtggaagtcttggaactcCggagggtggtgagattcacc	15	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	65793668	65793668	C	T	SNP	CATSPER1	ENST00000312106	human	ensembl	69_37n	-1	known	silent	c.183	p.P61	0.001	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	99	0	0	88	19	17.76	-	-	-	T	65793668	C	T	65793668	2	4	281	1	0	0	0	0	0	0	0	1	2712	639	23	1		1	CATSPER1	11	65793668	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1171695	65793668	69212848	702	31966										
KDM2A	0	genome.wustl.edu	37	chr11	67017996	67017996	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctgccaaccttcgccattCcccccgtgtgctagtgcagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	67017996	67017996	C	-	DEL	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	frame_shift_del	c.2495	p.R834fs	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	95	0	0	65	8	10.96	-	-	-	-	67017996	C	-	67017996	7	5	281	1	0	1	0	1	0	0	0	0	8178	855	30	0	2557	0	KDM2A	11	67017996	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1224328	67017996	67988520	703	31967										
ALDH3B1	0	genome.wustl.edu	37	chr11	67787216	67787216	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtggtgctgggcgggccccaGgagacggggcagctgctaga	20	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	67787216	67787216	G	A	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.481	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	53	0	0	35	4	10.26	-	-	-	A	67787216	G	A	67787216	1	1	281	0	1	0	0	0	0	0	0	0	499	991	35	4		4	ALDH3B1	11	67787216	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	769220	67787216	67219300	704	31968										
LRP5	0	genome.wustl.edu	37	chr11	68133068	68133068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgtgaggaggacaatggcGgctgctcccacctgtgcctg	15	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	68133068	68133068	G	A	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	missense	c.913	p.G305S	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_EGF-like	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	59	0	0	28	11	28.21	-	-	-	A	68133068	G	A	68133068	3	1	281	1	0	0	0	0	1	0	0	0	9026	1116	39	1	931	1	LRP5	11	68133068	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	345852	68133068	66873448	705	31969										
FOLR3	0	genome.wustl.edu	37	chr11	71847032	71847033	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagatgatgcagctgctgcINSttctggctttggtgactgct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	71847032	71847033	-	T	INS	FOLR3	ENST00000456237	human	ensembl	69_37n	1	known	frame_shift_ins	c.34_35	p.L13fs	0.998:1.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	128	0	0	112	25	18.25	-	-	-	T	71847033	-	T	71847032	7	5	281	1	0	1	1	0	0	0	0	0	6029	797	28	0	36	0	FOLR3	11	71847032	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	3713964	71847032	63159484	706	31970										
INPPL1	0	genome.wustl.edu	37	chr11	71942195	71942195	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtggctggacctactgcgcGggggcctcaaggagcttacg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	71942195	71942195	G	-	DEL	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	frame_shift_del	c.1459	p.G488fs	0.999	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	120	0	0	39	11	21.15	-	-	-	-	71942195	G	-	71942195	7	5	281	1	0	1	0	1	0	0	0	0	7815	1116	39	0	1505	0	INPPL1	11	71942195	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	95163	71942195	63064321	707	31971										
INPPL1	0	genome.wustl.edu	37	chr11	71948748	71948748	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caggccccctggagctgcagCccccccggggactgccctcg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	71948748	71948748	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	frame_shift_del	c.3460	p.R1156fs	0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	13	0	0	5	4	44.44	-	-	-	-	71948748	C	-	71948748	7	5	281	1	0	1	0	1	0	0	0	0	7815	739	26	0	3562	0	INPPL1	11	71948748	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	6553	71948748	63057768	708	31972										
ATG16L2	0	genome.wustl.edu	37	chr11	72539521	72539521	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacacactcaaggtcatcgaCctgcgtgtcagcaacatccg	8	14	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	72539521	72539521	C	G	SNP	ATG16L2	ENST00000321297	human	ensembl	69_37n	1	known	missense	c.1590	p.D530E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	118	0	0	77	20	20.62	-	-	-	G	72539521	C	G	72539521	3	3	281	1	0	0	0	0	1	0	0	0	1096	506	18	4	1648	4	ATG16L2	11	72539521	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	590773	72539521	62466995	709	31973										
C11orf30	0	genome.wustl.edu	37	chr11	76261113	76261113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggatgatgaggagacagcaAtggagcaggacatagacagt	15	5	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	76261113	76261113	A	G	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.3892	p.M1298V	0.850	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	124	0	0	86	18	17.31	-	-	-	G	76261113	A	G	76261113	3	3	281	1	0	0	0	0	1	0	0	0	1647	101	4	5	3970	5	C11orf30	11	76261113	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3721592	76261113	58745403	710	31974										
INTS4	0	genome.wustl.edu	37	chr11	77692573	77692573	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaatcctgctgtctttgatAataaacccaacaatgatgca	5	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	77692573	77692573	A	G	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	missense	c.296	p.L99S	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	55	0	0	61	34	35.79	-	-	-	G	77692573	A	G	77692573	3	3	281	1	0	0	0	0	1	0	0	0	7834	372	13	5	2679	5	INTS4	11	77692573	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1431460	77692573	57313943	711	31975										
PCF11	0	genome.wustl.edu	37	chr11	82880099	82880099	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacttagatttgataatcccCgaggtcagcctgtaggtgga	12	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	82880099	82880099	C	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	nonsense	c.2722	p.R908*	0.980	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	76	0	0	69	40	36.7	-	-	-	T	82880099	C	T	82880099	4	4	281	1	0	0	0	0	0	1	0	0	11646	644	23	1	2752	1	PCF11	11	82880099	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5187526	82880099	52126417	712	31976										
CCDC67	0	genome.wustl.edu	37	chr11	93104239	93104240	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accaaactcaactaaatggtINSaaaaaacagtgcttagaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	93104239	93104240	-	A	INS	CCDC67	ENST00000298050	human	ensembl	69_37n	1	known	frame_shift_ins	c.582_583	p.Q196fs	0.989:0.995	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	83	0	0	82	37	31.09	-	-	-	A	93104240	-	A	93104239	7	5	281	1	0	1	1	0	0	0	0	0	2866	1625	57	0	604	0	CCDC67	11	93104239	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	10224140	93104239	41902277	713	31977										
CCDC82	0	genome.wustl.edu	37	chr11	96117385	96117387	+	In_Frame_Del	DEL	TCT	TCT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttctttttcctcgcttgatgTcttcttcttctaaatcatcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	96117385	96117387	TCT	-	DEL	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	in_frame_del	c.527_525	p.E175in_frame_del	0.005:0.012:0.029	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	236	0	0	291	39	11.68	-	-	-	-	96117387	TCT	-	96117385	7	5	281	1	0	1	0	1	0	0	0	0	2883	1667	58	0	1135	0	CCDC82	11	96117385	In_Frame_Del	DEL	TCT	TCGA-AN-A0AK-01A-21W-A019-09	3013146	96117385	38889131	714	31978										
TRPC6	0	genome.wustl.edu	37	chr11	101341944	101341944	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgcatcttcctggaaaccTtttttatggccctggaacag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	101341944	101341944	T	-	DEL	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	frame_shift_del	c.2379	p.G794fs	0.992	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	286	0	0	206	120	36.36	-	-	-	-	101341944	T	-	101341944	7	5	281	1	0	1	0	1	0	0	0	0	16679	1606	56	0	436	0	TRPC6	11	101341944	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	5224559	101341944	33664572	715	31979										
FDX1	0	genome.wustl.edu	37	chr11	110333084	110333084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttttccatacagatcacgGttgggctgccaaatctgttt	8	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	110333084	110333084	G	A	SNP	FDX1	ENST00000260270	human	ensembl	69_37n	1	known	silent	c.447	p.R149	0.801	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	-	no_errors	FDX1	HGNC	ENSG00000137714	49	0	0	26	6	18.75	-	-	-	A	110333084	G	A	110333084	2	1	281	1	0	0	0	0	0	0	0	1	5850	1248	44	4		4	FDX1	11	110333084	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8991140	110333084	24673432	716	31980										
DLAT	0	genome.wustl.edu	37	chr11	111930667	111930667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgttgcggtcagtactcctGcaggactcatcacacctatt	9	12	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	111930667	111930667	G	A	SNP	DLAT	ENST00000280346	human	ensembl	69_37n	1	known	missense	c.1555	p.A519T	0.982	pfam_2-oxoacid_DH_actylTfrase,tigrfam_AcTrfase_Pyrv_DH_cplx_L	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_AcTrfase_Pyrv_DH_cplx_L	-	no_errors	DLAT	HGNC	ENSG00000150768	99	0	0	44	18	29.03	-	-	-	A	111930667	G	A	111930667	3	1	281	1	0	0	0	0	1	0	0	0	4585	1319	46	4	1601	4	DLAT	11	111930667	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1597583	111930667	23075849	717	31981										
REXO2	0	genome.wustl.edu	37	chr11	114320750	114320750	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggaggcaacttctggtggTttttttttctcacgctgatg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	114320750	114320750	T	-	DEL	REXO2	ENST00000544507	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	REXO2	HGNC	ENSG00000076043	170	1	0.58	46	58	53.21	-	-	-	-	114320750	T	-	114320750	6	5	281	0	1	1	0	1	0	0	0	0	13325	1740	60	0		0	REXO2	11	114320750	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2390083	114320750	20685766	718	31982										
HYOU1	0	genome.wustl.edu	37	chr11	118922240	118922240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggttaaaggtgatgactttgCgttgagggtagggccccatc	15	7	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	118922240	118922240	C	T	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479H	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	62	0	0	20	7	25	-	-	-	T	118922240	C	T	118922240	3	4	281	1	0	0	0	0	1	0	0	0	7524	768	27	1	1619	1	HYOU1	11	118922240	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4601490	118922240	16084276	719	31983										
VPS11	0	genome.wustl.edu	37	chr11	118949892	118949892	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cactctccgtcatcagggacTacctggtccaaaaactacag	7	14	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	118949892	118949892	T	C	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	52	0	0	19	11	36.67	-	-	-	C	118949892	T	C	118949892	1	2	281	0	1	0	0	0	0	0	0	0	17285	1522	53	5		5	VPS11	11	118949892	RNA	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	27652	118949892	16056624	720	31984										
PVRL1	0	genome.wustl.edu	37	chr11	119535816	119535816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatgcctgccttgctgtagcCgttgccatacacgtgcttct	10	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	119535816	119535816	C	T	SNP	PVRL1	ENST00000264025	human	ensembl	69_37n	-1	known	missense	c.1195	p.G399S	1.000	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL1	HGNC	ENSG00000110400	62	0	0	9	26	74.29	-	-	-	T	119535816	C	T	119535816	3	4	281	1	0	0	0	0	1	0	0	0	12922	652	23	1	748	1	PVRL1	11	119535816	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	585924	119535816	15470700	721	31985										
TECTA	0	genome.wustl.edu	37	chr11	121023639	121023639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagagctgcgtgagtgtctgCcagccccgctgcgccgccat	14	15	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	121023639	121023639	C	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	silent	c.4155	p.C1385	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	69	0	0	39	22	36.07	-	-	-	T	121023639	C	T	121023639	2	4	281	1	0	0	0	0	0	0	0	1	15842	747	26	4		4	TECTA	11	121023639	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1487823	121023639	13982877	722	31986										
OR10G8	0	genome.wustl.edu	37	chr11	123901043	123901043	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggaagcacagagcctttcaGacctgtgcctcccactgtat	10	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	123901043	123901043	G	T	SNP	OR10G8	ENST00000431524	human	ensembl	69_37n	1	known	missense	c.714	p.Q238H	0.951	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10G8	HGNC	ENSG00000234560	290	0	0	162	67	29.26	-	-	-	T	123901043	G	T	123901043	3	4	281	1	0	0	0	0	1	0	0	0	10976	933	33	2	716	2	OR10G8	11	123901043	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2877404	123901043	11105473	723	31987										
RPUSD4	0	genome.wustl.edu	37	chr11	126075389	126075389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggctggagctccacgaggGcggaggagagagtgctgctg	20	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	11	126075389	126075389	G	A	SNP	RPUSD4	ENST00000298317	human	ensembl	69_37n	-1	known	missense	c.770	p.A257V	0.999	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526	47	0	0	27	13	32.5	-	-	-	A	126075389	G	A	126075389	3	1	281	1	0	0	0	0	1	0	0	0	13755	1203	42	4	375	4	RPUSD4	11	126075389	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2174346	126075389	8931127	724	31988										
FBXL14	0	genome.wustl.edu	37	chr12	1702885	1702885	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgagagcgcgcagggagccGatctcctgcacaaacgcgtg	14	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	1702885	1702885	G	T	SNP	FBXL14	ENST00000339235	human	ensembl	69_37n	-1	known	silent	c.348	p.I116	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823	38	0	0	15	10	40	-	-	-	T	1702885	G	T	1702885	2	4	281	1	0	0	0	0	0	0	0	1	5756	1048	37	3		3	FBXL14	12	1702885	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09		1702885	132149010	725	31989										
CACNA2D4	0	genome.wustl.edu	37	chr12	1910750	1910750	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccccacttactggctgaacaCccccatgctgagcagctggg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	1910750	1910750	C	-	DEL	CACNA2D4	ENST00000382722	human	ensembl	69_37n	-1	known	frame_shift_del	c.2782	p.V928fs	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062	9	0	0	3	3	50	-	-	-	-	1910750	C	-	1910750	7	5	281	1	0	1	0	1	0	0	0	0	2576	507	18	0	667	0	CACNA2D4	12	1910750	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	207865	1910750	131941145	726	31990										
CCND2	0	genome.wustl.edu	37	chr12	4388070	4388070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcatgctcagaccttcattGctctgtgtgccaccggtaag	10	12	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	4388070	4388070	G	A	SNP	CCND2	ENST00000261254	human	ensembl	69_37n	1	known	missense	c.556	p.A186T	1.000	pfam_Cyclin_C,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND2	HGNC	ENSG00000118971	39	0	0	34	7	17.07	-	-	-	A	4388070	G	A	4388070	3	1	281	1	0	0	0	0	1	0	0	0	2946	1319	46	4	566	4	CCND2	12	4388070	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2477320	4388070	129463825	727	31991										
C12orf5	0	genome.wustl.edu	37	chr12	4459055	4459055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaagtatgactcaagacttcGggaaagggtgagtaacttat	11	5	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	4459055	4459055	G	A	SNP	C12orf5	ENST00000179259	human	ensembl	69_37n	1	known	missense	c.263	p.R88Q	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	C12orf5	HGNC	ENSG00000078237	168	0	0	164	39	19.12	-	-	-	A	4459055	G	A	4459055	3	1	281	1	0	0	0	0	1	0	0	0	1706	1116	39	1	277	1	C12orf5	12	4459055	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	70985	4459055	129392840	728	31992										
FGF23	0	genome.wustl.edu	37	chr12	4479729	4479729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgagtcgtcctcggcgctcCgggtgtgccgccgtggtatg	16	14	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	4479729	4479729	C	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	missense	c.536	p.R179Q	0.988	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	50	0	0	37	14	27.45	-	-	-	T	4479729	C	T	4479729	3	4	281	1	0	0	0	0	1	0	0	0	5898	652	23	1	223	1	FGF23	12	4479729	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	20674	4479729	129372166	729	31993										
NTF3	0	genome.wustl.edu	37	chr12	5603725	5603725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcacccccttggagcccccGcccttgtatctcatggagga	10	16	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	5603725	5603725	G	A	SNP	NTF3	ENST00000331010	human	ensembl	69_37n	1	known	silent	c.345	p.P115	0.119	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	-	no_errors	NTF3	HGNC	ENSG00000185652	85	0	0	70	12	14.29	-	-	-	A	5603725	G	A	5603725	2	1	281	1	0	0	0	0	0	0	0	1	10769	1074	38	1		1	NTF3	12	5603725	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1123996	5603725	128248170	730	31994										
CD4	0	genome.wustl.edu	37	chr12	6925451	6925451	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagatgggcaagaagctcccGctccacctcaccctgcccca	8	19	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	6925451	6925451	G	A	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	silent	c.837	p.P279	0.000	pfam_CD4-extracel,smart_Ig_sub,prints_Ag_CD4	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	414	0	0	322	93	22.41	-	-	-	A	6925451	G	A	6925451	2	1	281	1	0	0	0	0	0	0	0	1	3043	1074	38	1		1	CD4	12	6925451	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1321726	6925451	126926444	731	31995										
C1R	0	genome.wustl.edu	37	chr12	7241528	7241528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attgctgctggtgtcgaggtCggggggcctttgcttcccac	15	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	7241528	7241528	C	T	SNP	C1R	ENST00000290575	human	ensembl	69_37n	-1	known	missense	c.865	p.D289N	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1R	HGNC	ENSG00000159403	21	0	0	12	23	62.16	-	-	-	T	7241528	C	T	7241528	3	4	281	1	0	0	0	0	1	0	0	0	1991	884	31	1	997	1	C1R	12	7241528	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	316077	7241528	126610367	732	31996										
C1R	0	genome.wustl.edu	37	chr12	7242010	7242010	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtagttgcagcgcaggtcaGgggggtaggaccgagggtac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	7242010	7242010	G	-	DEL	C1R	ENST00000290575	human	ensembl	69_37n	-1	known	frame_shift_del	c.689	p.P230fs	0.019	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1R	HGNC	ENSG00000159403	121	0	0	87	29	24.58	-	-	-	-	7242010	G	-	7242010	7	5	281	1	0	1	0	1	0	0	0	0	1991	1000	35	0	1177	0	C1R	12	7242010	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	482	7242010	126609885	733	31997										
PZP	0	genome.wustl.edu	37	chr12	9321278	9321278	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgaagtatcggatgtatctAaaaaaaaatctctgatcagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	9321278	9321278	A	-	DEL	PZP	ENST00000546116	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PZP	HGNC	ENSG00000126838	30	0	0	27	9	25	-	-	-	-	9321278	A	-	9321278	6	5	281	0	1	1	0	1	0	0	0	0	12952	377	13	0		0	PZP	12	9321278	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2079268	9321278	124530617	734	31998										
CLEC7A	0	genome.wustl.edu	37	chr12	10280420	10280421	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aattacagcaatgaggcgccINSaaggaggagatgcagcacac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	10280420	10280421	-	A	INS	CLEC7A	ENST00000304084	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.W43fs	0.969:0.967	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC7A	HGNC	ENSG00000172243	18	0	0	15	8	34.78	-	-	-	A	10280421	-	A	10280420	7	5	281	1	0	1	1	0	0	0	0	0	3551	595	21	0	671	0	CLEC7A	12	10280420	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	959142	10280420	123571475	735	31999										
MAGOHB	0	genome.wustl.edu	37	chr12	10766111	10766111	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctacgtagtagcgcaggtaGaaatcgctagccacagccat	10	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	10766111	10766111	G	A	SNP	MAGOHB	ENST00000320756	human	ensembl	69_37n	-1	known	silent	c.21	p.F7	1.000	pfam_Mago_nashi,superfamily_Mago_nashi	pfam_Mago_nashi,superfamily_Mago_nashi	-	no_errors	MAGOHB	HGNC	ENSG00000111196	90	0	0	82	17	17.17	-	-	-	A	10766111	G	A	10766111	2	1	281	1	0	0	0	0	0	0	0	1	9266	933	33	2		2	MAGOHB	12	10766111	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	485691	10766111	123085784	736	32000										
CSDA	0	genome.wustl.edu	37	chr12	10854894	10854894	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcaggaggctgaggcaggCggatcacttgaggtcaggag	17	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	10854894	10854894	C	T	SNP	CSDA	ENST00000366286	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.078	-	-	-	no_errors	CSDA	HGNC	ENSG00000060138	14	0	0	6	9	60	-	-	-	T	10854894	C	T	10854894	1	4	281	0	1	0	0	0	0	0	0	0	3959	783	27	1		1	CSDA	12	10854894	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	88783	10854894	122997001	737	32001										
TAS2R19	0	genome.wustl.edu	37	chr12	11174586	11174586	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agagaacagattaacagcagAaaacatattaggctcagagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	11174586	11174586	A	-	DEL	TAS2R19	ENST00000390673	human	ensembl	69_37n	-1	known	frame_shift_del	c.585	p.L196fs	0.003	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R19	HGNC	ENSG00000212124	337	0	0	298	57	15.92	-	-	-	-	11174586	A	-	11174586	7	5	281	1	0	1	0	1	0	0	0	0	15662	243	9	0	317	0	TAS2R19	12	11174586	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	319692	11174586	122677309	738	32002										
TAS2R31	0	genome.wustl.edu	37	chr12	11183780	11183780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcaaaccaactctggagaccGccagagcagtgagaatctgg	12	11	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	11183780	11183780	G	A	SNP	TAS2R31	ENST00000390675	human	ensembl	69_37n	-1	known	missense	c.155	p.A52V	0.009	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436	326	0	0	326	72	18.09	-	-	-	A	11183780	G	A	11183780	3	1	281	1	0	0	0	0	1	0	0	0	15666	1087	38	1	778	1	TAS2R31	12	11183780	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	9194	11183780	122668115	739	32003										
LRP6	0	genome.wustl.edu	37	chr12	12312058	12312058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttaagccaaaaggatgaggCaagtcatctgctataacttc	9	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	12312058	12312058	C	T	SNP	LRP6	ENST00000538239	human	ensembl	69_37n	-1	known	missense	c.2090	p.C697Y	1.000	smart_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRP6	HGNC	ENSG00000070018	89	0	0	54	35	39.33	-	-	-	T	12312058	C	T	12312058	3	4	281	1	0	0	0	0	1	0	0	0	9028	709	25	4	2393	4	LRP6	12	12312058	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1128278	12312058	121539837	740	32004										
GPR19	0	genome.wustl.edu	37	chr12	12814830	12814830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcaaagacccacgatgccgCaatcattttcttggcttttt	6	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	12814830	12814830	C	T	SNP	GPR19	ENST00000332427	human	ensembl	69_37n	-1	known	missense	c.553	p.A185T	0.017	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150	179	0	0	160	35	17.95	-	-	-	T	12814830	C	T	12814830	3	4	281	1	0	0	0	0	1	0	0	0	6729	710	25	4	698	4	GPR19	12	12814830	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	502772	12814830	121037065	741	32005										
GPRC5D	0	genome.wustl.edu	37	chr12	13103174	13103174	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgcagtcttggatctttcGcatgaggaagagaaatgcta	12	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	13103174	13103174	G	A	SNP	GPRC5D	ENST00000228887	human	ensembl	69_37n	-1	known	nonsense	c.145	p.R49*	0.779	pfam_GPCR_3_C	pfam_GPCR_3_C	-	no_errors	GPRC5D	HGNC	ENSG00000111291	183	1	0.54	176	25	12.38	-	-	-	A	13103174	G	A	13103174	4	1	281	1	0	0	0	0	0	1	0	0	6778	1095	38	1	902	1	GPRC5D	12	13103174	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	288344	13103174	120748721	742	32006										
ATF7IP	0	genome.wustl.edu	37	chr12	14613927	14613927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctattgtacaagccacaaGgacttctttacccacagtgg	7	12	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	14613927	14613927	G	T	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	missense	c.2657	p.R886M	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	131	0	0	89	29	24.58	-	-	-	T	14613927	G	T	14613927	3	4	281	1	0	0	0	0	1	0	0	0	1091	1000	35	4	2687	4	ATF7IP	12	14613927	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1510753	14613927	119237968	743	32007										
GUCY2C	0	genome.wustl.edu	37	chr12	14772223	14772223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgaggcatcttgattcccaCaactccagcagcacagggac	9	14	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	14772223	14772223	C	T	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.2797	p.V933M	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	153	0	0	109	18	14.17	-	-	-	T	14772223	C	T	14772223	3	4	281	1	0	0	0	0	1	0	0	0	6947	478	17	4	440	4	GUCY2C	12	14772223	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	158296	14772223	119079672	744	32008										
PLCZ1	0	genome.wustl.edu	37	chr12	18841025	18841025	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtatatcaggagctcaccaTtttttttaattacacgagtc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	18841025	18841025	T	-	DEL	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	frame_shift_del	c.1589	p.N530fs	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	153	0	0	116	20	14.39	-	-	-	-	18841025	T	-	18841025	7	5	281	1	0	1	0	1	0	0	0	0	12118	1493	52	0	249	0	PLCZ1	12	18841025	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	4068802	18841025	115010870	745	32009										
SLCO1A2	0	genome.wustl.edu	37	chr12	21457362	21457362	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtagatttccatacttaccAatatataaaggagaattttc	6	6	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	21457362	21457362	A	G	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	silent	c.588	p.I196	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	136	1	0.73	138	33	19.19	-	-	-	G	21457362	A	G	21457362	2	3	281	1	0	0	0	0	0	0	0	1	14811	144	5	5		5	SLCO1A2	12	21457362	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2616337	21457362	112394533	746	32010										
SLCO1A2	0	genome.wustl.edu	37	chr12	21457423	21457423	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tataggaaatacccaaaggcAggatgggagtttcacccatt	10	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	21457423	21457423	A	G	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	missense	c.527	p.L176P	0.979	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	169	0	0	148	34	18.68	-	-	-	G	21457423	A	G	21457423	3	3	281	1	0	0	0	0	1	0	0	0	14811	188	7	5	1525	5	SLCO1A2	12	21457423	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	61	21457423	112394472	747	32011										
TSPAN11	0	genome.wustl.edu	37	chr12	31131548	31131548	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgagctggtggcgggagtccTggcccatgtgtattaccaga	15	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	31131548	31131548	T	C	SNP	TSPAN11	ENST00000261177	human	ensembl	69_37n	1	known	missense	c.329	p.L110P	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900	96	0	0	64	14	17.95	-	-	-	C	31131548	T	C	31131548	3	2	281	1	0	0	0	0	1	0	0	0	16731	1580	55	5	339	5	TSPAN11	12	31131548	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	9674125	31131548	102720347	748	32012										
KIF21A	0	genome.wustl.edu	37	chr12	39725549	39725549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatcgggcttctgtaagggtGcaggcattaatgactgcagt	13	7	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	39725549	39725549	G	A	SNP	KIF21A	ENST00000547108	human	ensembl	69_37n	-1	known	missense	c.869	p.A290V	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF21A	HGNC	ENSG00000139116	261	0	0	212	42	16.54	-	-	-	A	39725549	G	A	39725549	3	1	281	1	0	0	0	0	1	0	0	0	8340	1311	46	4	1996	4	KIF21A	12	39725549	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8594001	39725549	94126346	749	32013										
LRRK2	0	genome.wustl.edu	37	chr12	40657647	40657647	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcataagctaaatatggttAaaaaacagtgtttcaagaat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	40657647	40657647	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	frame_shift_del	c.1600	p.K535fs	0.012	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	239	0	0	236	50	17.36	-	-	-	-	40657647	A	-	40657647	7	5	281	1	0	1	0	1	0	0	0	0	9099	363	13	0	1654	0	LRRK2	12	40657647	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	932098	40657647	93194248	750	32014										
ZCRB1	0	genome.wustl.edu	37	chr12	42707750	42707750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaggctcacgttctccgagCatatttttcggacaggcata	11	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	42707750	42707750	C	T	SNP	ZCRB1	ENST00000266529	human	ensembl	69_37n	-1	known	missense	c.372	p.M124I	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_RRM_dom_euk,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	ZCRB1	HGNC	ENSG00000139168	186	0	0	168	36	17.65	-	-	-	T	42707750	C	T	42707750	3	4	281	1	0	0	0	0	1	0	0	0	17692	710	25	4	293	4	ZCRB1	12	42707750	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2050103	42707750	91144145	751	32015										
RND1	0	genome.wustl.edu	37	chr12	49259482	49259482	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacatcgcggtcttcccacaCtgcacgtccccgaccagaac	7	18	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	49259482	49259482	C	T	SNP	RND1	ENST00000309739	human	ensembl	69_37n	-1	known	silent	c.69	p.Q23	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND1	HGNC	ENSG00000172602	49	0	0	25	17	40.48	-	-	-	T	49259482	C	T	49259482	2	4	281	1	0	0	0	0	0	0	0	1	13505	564	20	4		4	RND1	12	49259482	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6551732	49259482	84592413	752	32016										
MLL2	0	genome.wustl.edu	37	chr12	49427950	49427950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggccagcttttttggcagtgCgctgcttggcacacagagcc	13	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	49427950	49427950	C	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.10640	p.R3547H	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	102	0	0	44	41	48.24	-	-	-	T	49427950	C	T	49427950	3	4	281	1	0	0	0	0	1	0	0	0	9692	768	27	1	6041	1	MLL2	12	49427950	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	168468	49427950	84423945	753	32017										
MLL2	0	genome.wustl.edu	37	chr12	49445159	49445159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctcaggctggggggacagGtgtggctcctcagcctgcgg	17	12	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	49445159	49445159	G	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.2307	p.H769	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	66	0	0	26	5	16.13	-	-	-	A	49445159	G	A	49445159	2	1	281	1	0	0	0	0	0	0	0	1	9692	1252	44	4		4	MLL2	12	49445159	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	17209	49445159	84406736	754	32018										
MLL2	0	genome.wustl.edu	37	chr12	49447773	49447773	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttctcacccagatatgcagCcccctcactgtgctctgggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	49447773	49447773	C	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	frame_shift_del	c.661	p.A221fs	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	185	0	0	99	17	14.66	-	-	-	-	49447773	C	-	49447773	7	5	281	1	0	1	0	1	0	0	0	0	9692	739	26	0	16152	0	MLL2	12	49447773	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	2614	49447773	84404122	755	32019										
FMNL3	0	genome.wustl.edu	37	chr12	50042029	50042029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagtttgccttcattggtacTgaggaagttccggaggacgc	13	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	50042029	50042029	T	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.2623	p.S875G	0.047	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	77	0	0	45	11	19.64	-	-	-	C	50042029	T	C	50042029	3	2	281	1	0	0	0	0	1	0	0	0	5999	1580	55	5	480	5	FMNL3	12	50042029	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	594256	50042029	83809866	756	32020										
KRT83	0	genome.wustl.edu	37	chr12	52713036	52713036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actcggcctcccgccgcagaGtctcgatgtagccagcaaac	10	16	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	52713036	52713036	G	A	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	missense	c.497	p.T166I	0.998	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	185	0	0	95	26	21.31	-	-	-	A	52713036	G	A	52713036	3	1	281	1	0	0	0	0	1	0	0	0	8550	1029	36	4	1016	4	KRT83	12	52713036	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2671007	52713036	81138859	757	32021										
KRT8	0	genome.wustl.edu	37	chr12	53292614	53292614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctccagctcggacaacttggCgttggcatccttaatggcca	10	13	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	53292614	53292614	C	T	SNP	KRT8	ENST00000293308	human	ensembl	69_37n	-1	known	missense	c.1051	p.A351T	0.001	pfam_F,prints_Keratin_II,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	87	0	0	42	28	40	-	-	-	T	53292614	C	T	53292614	3	4	281	1	0	0	0	0	1	0	0	0	8546	768	27	1	412	1	KRT8	12	53292614	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	579578	53292614	80559281	758	32022										
CSAD	0	genome.wustl.edu	37	chr12	53555122	53555122	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcctccagggggtcaaaggCccctagcacagtggtgccag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	53555122	53555122	C	-	DEL	CSAD	ENST00000267085	human	ensembl	69_37n	-1	known	frame_shift_del	c.835	p.A279fs	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CSAD	HGNC	ENSG00000139631	60	0	0	40	9	18	-	-	-	-	53555122	C	-	53555122	7	5	281	1	0	1	0	1	0	0	0	0	3955	739	26	0	755	0	CSAD	12	53555122	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	262508	53555122	80296773	759	32023										
ITGB7	0	genome.wustl.edu	37	chr12	53586198	53586198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagctggttgtccagggtccGctctttgcaccagccatcat	10	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	53586198	53586198	G	A	SNP	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	missense	c.2071	p.R691W	0.601	pirsf_Integrin_bsu,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	168	0	0	90	24	21.05	-	-	-	A	53586198	G	A	53586198	3	1	281	1	0	0	0	0	1	0	0	0	7954	1086	38	1	337	1	ITGB7	12	53586198	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	31076	53586198	80265697	760	32024										
NFE2	0	genome.wustl.edu	37	chr12	54686949	54686949	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgagcaggcctgagaggcTcagtggcttggagactggta	16	8	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	54686949	54686949	T	C	SNP	NFE2	ENST00000312156	human	ensembl	69_37n	-1	known	missense	c.331	p.S111G	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405	175	0	0	113	55	32.74	-	-	-	C	54686949	T	C	54686949	3	2	281	1	0	0	0	0	1	0	0	0	10438	1551	54	5	794	5	NFE2	12	54686949	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1100751	54686949	79164946	761	32025										
GPR84	0	genome.wustl.edu	37	chr12	54756762	54756762	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctttggcagatgcttctgGagggcttttctctgccatct	12	10	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	54756762	54756762	G	T	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.874	p.P292T	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	164	0	0	161	28	14.81	-	-	-	T	54756762	G	T	54756762	3	4	281	1	0	0	0	0	1	0	0	0	6764	1174	41	2	320	2	GPR84	12	54756762	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	69813	54756762	79095133	762	32026										
GTSF1	0	genome.wustl.edu	37	chr12	54858554	54858554	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acatcaaatttagaagatagGcaggatttctcattgttagc	8	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	54858554	54858554	G	A	SNP	GTSF1	ENST00000548538	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GTSF1	HGNC	ENSG00000170627	16	0	0	4	4	50	-	-	-	A	54858554	G	A	54858554	1	1	281	0	1	0	0	0	0	0	0	0	6937	1218	42	4		4	GTSF1	12	54858554	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	101792	54858554	78993341	763	32027										
OR6C1	0	genome.wustl.edu	37	chr12	55714605	55714605	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaatttcgttcacaaccgtCagtatacccaagtttctggg	8	10	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	55714605	55714605	C	A	SNP	OR6C1	ENST00000379668	human	ensembl	69_37n	1	known	silent	c.222	p.V74	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330	123	0	0	111	27	19.57	-	-	-	A	55714605	C	A	55714605	2	1	281	1	0	0	0	0	0	0	0	1	11263	813	29	2		2	OR6C1	12	55714605	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	856051	55714605	78137290	764	32028										
MIP	0	genome.wustl.edu	37	chr12	56848144	56848144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgccatatagcagaaggcaCggagcagggacatctgggag	15	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	56848144	56848144	C	T	SNP	MIP	ENST00000257979	human	ensembl	69_37n	-1	known	missense	c.254	p.R85H	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_Aquaporin	-	no_errors	MIP	HGNC	ENSG00000135517	45	0	0	48	6	11.11	-	-	-	T	56848144	C	T	56848144	3	4	281	1	0	0	0	0	1	0	0	0	9662	536	19	1	553	1	MIP	12	56848144	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1133539	56848144	77003751	765	32029										
LRP1	0	genome.wustl.edu	37	chr12	57556255	57556255	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acccttctgcgcagtgagcgGccccccatctttgagatccg	10	16	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	57556255	57556255	G	C	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.2358	p.R786	0.969	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	63	0	0	40	33	45.21	-	-	-	C	57556255	G	C	57556255	2	2	281	1	0	0	0	0	0	0	0	1	9017	1190	42	4		4	LRP1	12	57556255	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	708111	57556255	76295640	766	32030										
OS9	0	genome.wustl.edu	37	chr12	58089792	58089792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atctcggctactaccaatcaGccttcgactgggatgatgaa	9	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	58089792	58089792	G	A	SNP	OS9	ENST00000315970	human	ensembl	69_37n	1	known	missense	c.451	p.A151T	0.856	pfam_PRKCSH	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	197	0	0	169	92	34.85	-	-	-	A	58089792	G	A	58089792	3	1	281	1	0	0	0	0	1	0	0	0	11345	971	34	4	465	4	OS9	12	58089792	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	533537	58089792	75762103	767	32031										
HELB	0	genome.wustl.edu	37	chr12	66717934	66717934	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctgattttgctaaaaataaGcgtgactttgaaagtaacgt	8	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	66717934	66717934	G	A	SNP	HELB	ENST00000247815	human	ensembl	69_37n	1	known	silent	c.2469	p.K823	0.080	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	162	0	0	158	35	18.13	-	-	-	A	66717934	G	A	66717934	2	1	281	1	0	0	0	0	0	0	0	1	7096	962	34	4		4	HELB	12	66717934	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	8628142	66717934	67133961	768	32032										
DYRK2	0	genome.wustl.edu	37	chr12	68052207	68052207	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaggggtgtgatgatccccTtttccttgacttcttaaaac	9	9	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	68052207	68052207	T	C	SNP	DYRK2	ENST00000344096	human	ensembl	69_37n	1	known	missense	c.1520	p.L507P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334	199	0	0	159	20	11.17	-	-	-	C	68052207	T	C	68052207	3	2	281	1	0	0	0	0	1	0	0	0	4891	1609	56	5	1530	5	DYRK2	12	68052207	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1334273	68052207	65799688	769	32033										
NUP107	0	genome.wustl.edu	37	chr12	69126366	69126366	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaatttgtagaatatctttAaaaaaaaaactctgatattc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	69126366	69126366	A	-	DEL	NUP107	ENST00000401003	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP107	HGNC	ENSG00000111581	29	0	0	13	11	45.83	-	-	-	-	69126366	A	-	69126366	6	5	281	0	1	1	0	1	0	0	0	0	10826	377	13	0		0	NUP107	12	69126366	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1074159	69126366	64725529	770	32034										
MDM2	0	genome.wustl.edu	37	chr12	69233090	69233090	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcatgcaatgaaatgaatCccccccttccatcacattgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	69233090	69233090	C	-	DEL	MDM2	ENST00000462284	human	ensembl	69_37n	1	known	frame_shift_del	c.955	p.L321fs	1.000	pfam_Znf_RanBP2,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679	286	0	0	267	55	17.08	-	-	-	-	69233090	C	-	69233090	7	5	281	1	0	1	0	1	0	0	0	0	9484	855	30	0	997	0	MDM2	12	69233090	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	106724	69233090	64618805	771	32035										
RAB3IP	0	genome.wustl.edu	37	chr12	70206762	70206762	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatcacttctgtatgtaacTtttttacatacattcgatac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	70206762	70206762	T	-	DEL	RAB3IP	ENST00000550536	human	ensembl	69_37n	1	known	frame_shift_del	c.1297	p.F434fs	1.000	NULL	pfam_Sec2p	-	no_errors	RAB3IP	HGNC	ENSG00000127328	204	0	0	125	28	18.3	-	-	-	-	70206762	T	-	70206762	7	5	281	1	0	1	0	1	0	0	0	0	13021	1609	56	0	1335	0	RAB3IP	12	70206762	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	973672	70206762	63645133	772	32036										
LGR5	0	genome.wustl.edu	37	chr12	71977911	71977911	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgggtggcagcaagtatggCgcctcccctctctgcctgcc	12	16	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	71977911	71977911	C	T	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	silent	c.2121	p.G707	0.021	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	268	0	0	247	59	19.28	-	-	-	T	71977911	C	T	71977911	2	4	281	1	0	0	0	0	0	0	0	1	8812	755	27	1		1	LGR5	12	71977911	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1771149	71977911	61873984	773	32037										
ZFC3H1	0	genome.wustl.edu	37	chr12	72007122	72007122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtttttcttacctcaatgCaagtccagaattagctggca	7	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	72007122	72007122	C	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.5620	p.A1874T	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	56	0	0	53	13	19.7	-	-	-	T	72007122	C	T	72007122	3	4	281	1	0	0	0	0	1	0	0	0	17729	710	25	4	369	4	ZFC3H1	12	72007122	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	29211	72007122	61844773	774	32038										
PPP1R12A	0	genome.wustl.edu	37	chr12	80214932	80214932	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtggagatttcttgtcccgTttttcactatggagctttgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	80214932	80214932	T	-	DEL	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	frame_shift_del	c.882	p.K294fs	0.998	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	186	0	0	143	32	18.29	-	-	-	-	80214932	T	-	80214932	7	5	281	1	0	1	0	1	0	0	0	0	12431	1722	60	0	2286	0	PPP1R12A	12	80214932	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	8207810	80214932	53636963	775	32039										
SLC6A15	0	genome.wustl.edu	37	chr12	85285703	85285703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaggatgtattgtagtttaCtgttccaagctggtctttca	9	8	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	85285703	85285703	C	T	SNP	SLC6A15	ENST00000266682	human	ensembl	69_37n	-1	known	missense	c.197	p.S66N	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan,pfscan_Na/ntran_symport	-	no_errors	SLC6A15	HGNC	ENSG00000072041	208	0	0	220	48	17.78	-	-	-	T	85285703	C	T	85285703	3	4	281	1	0	0	0	0	1	0	0	0	14767	565	20	4	2153	4	SLC6A15	12	85285703	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5070771	85285703	48566192	776	32040										
LRRIQ1	0	genome.wustl.edu	37	chr12	85547514	85547515	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttgctaaaatctgaaaaagINSaaaaaaaaatttcagaagaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	85547514	85547515	-	A	INS	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	frame_shift_ins	c.4615_4616	p.I1542fs	1.000:1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	21	0	0	11	3	21.43	-	-	-	A	85547515	-	A	85547514	7	5	281	1	0	1	1	0	0	0	0	0	9095	943	33	0	4701	0	LRRIQ1	12	85547514	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	261811	85547514	48304381	777	32041										
GAS2L3	0	genome.wustl.edu	37	chr12	101012337	101012337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catcagcattccaaaatcatGctgtcggcatgaagagctac	8	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	101012337	101012337	G	A	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	missense	c.620	p.C207Y	1.000	superfamily_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	92	0	0	90	18	16.67	-	-	-	A	101012337	G	A	101012337	3	1	281	1	0	0	0	0	1	0	0	0	6298	1319	46	4	642	4	GAS2L3	12	101012337	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	15464823	101012337	32839558	778	32042										
STAB2	0	genome.wustl.edu	37	chr12	104155174	104155174	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttccaggcctttaaaagcaCcccctgcccccgtggtgagt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	104155174	104155174	C	-	DEL	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	frame_shift_del	c.7345	p.P2450fs	1.000	superfamily_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	61	0	0	78	9	10.23	-	-	-	-	104155174	C	-	104155174	7	5	281	1	0	1	0	1	0	0	0	0	15329	507	18	0	7607	0	STAB2	12	104155174	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	3142837	104155174	29696721	779	32043										
TDG	0	genome.wustl.edu	37	chr12	104380669	104380669	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taagacccagtctctactttAaaaaaagcaaatatttctaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	104380669	104380669	A	-	DEL	TDG	ENST00000536395	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.009	-	-	-	no_errors	TDG	HGNC	ENSG00000139372	112	0	0	108	16	12.8	-	-	-	-	104380669	A	-	104380669	6	5	281	0	1	1	0	1	0	0	0	0	15820	377	13	0		0	TDG	12	104380669	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	225495	104380669	29471226	780	32044										
ALDH1L2	0	genome.wustl.edu	37	chr12	105420412	105420412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgttaataaaaacagttcctGcttccagtttttcactcaca	4	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	105420412	105420412	G	A	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.2627	p.A876V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	479	0	0	351	84	19.31	-	-	-	A	105420412	G	A	105420412	3	1	281	1	0	0	0	0	1	0	0	0	495	1319	46	4	152	4	ALDH1L2	12	105420412	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1039743	105420412	28431483	781	32045										
KIAA1033	0	genome.wustl.edu	37	chr12	105550482	105550483	+	RNA	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttatttatataaatatctgaINStttttttgtgtggtttttaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	105550482	105550483	-	T	INS	KIAA1033	ENST00000551290	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.242:0.638	-	-	-	no_errors	KIAA1033	HGNC	ENSG00000136051	80	0	0	86	17	16.5	-	-	-	T	105550483	-	T	105550482	6	5	281	0	1	1	1	0	0	0	0	0	8258	348	12	0		0	KIAA1033	12	105550482	RNA	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	130070	105550482	28301413	782	32046										
MTERFD3	0	genome.wustl.edu	37	chr12	107371422	107371422	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaaaattagcttcaaactcTttttttgatccatttagatt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	107371422	107371422	T	-	DEL	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	frame_shift_del	c.1071	p.E358fs	0.999	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	278	0	0	245	67	21.34	-	-	-	-	107371422	T	-	107371422	7	5	281	1	0	1	0	1	0	0	0	0	9993	1606	56	0	90	0	MTERFD3	12	107371422	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1820940	107371422	26480473	783	32047										
CMKLR1	0	genome.wustl.edu	37	chr12	108686289	108686289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtaagccaggcgaacgctgcGgtggttctgggaccagacag	16	10	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	108686289	108686289	G	A	SNP	CMKLR1	ENST00000312143	human	ensembl	69_37n	-1	known	missense	c.451	p.R151C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_DEZorph_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	191	0	0	118	26	18.06	-	-	-	A	108686289	G	A	108686289	3	1	281	1	0	0	0	0	1	0	0	0	3609	1116	39	1	674	1	CMKLR1	12	108686289	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1314867	108686289	25165606	784	32048										
FICD	0	genome.wustl.edu	37	chr12	108912608	108912608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaccctctcggaaatcaggCacatcctggagacccgctac	8	16	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	108912608	108912608	C	T	SNP	FICD	ENST00000552695	human	ensembl	69_37n	1	known	missense	c.733	p.H245Y	1.000	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855	90	0	0	49	13	20.97	-	-	-	T	108912608	C	T	108912608	3	4	281	1	0	0	0	0	1	0	0	0	5933	710	25	4	739	4	FICD	12	108912608	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	226319	108912608	24939287	785	32049										
SSH1	0	genome.wustl.edu	37	chr12	109201438	109201438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatagcgcgggggagtcgggCcgcgtagactccaggtcctg	17	11	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	109201438	109201438	C	T	SNP	SSH1	ENST00000546433	human	ensembl	69_37n	-1	known	missense	c.29	p.G10D	1.000	NULL	pfam_DEK_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SSH1	HGNC	ENSG00000084112	73	0	0	40	7	14.89	-	-	-	T	109201438	C	T	109201438	3	4	281	1	0	0	0	0	1	0	0	0	15275	726	26	4	2665	4	SSH1	12	109201438	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	288830	109201438	24650457	786	32050										
MMAB	0	genome.wustl.edu	37	chr12	109996961	109996961	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctggacaagaggcaccacaCtagaaagggaggagacactg	13	9	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	109996961	109996961	C	T	SNP	MMAB	ENST00000545712	human	ensembl	69_37n	-1	known	splice_site	c.585-1	e8-1	0.991	-	-	-	no_errors	MMAB	HGNC	ENSG00000139428	43	0	0	20	6	23.08	-	-	-	T	109996961	C	T	109996961	5	4	281	1	0	0	0	0	0	0	1	0	9711	579	20	4	176	4	MMAB	12	109996961	Splice_Site	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	795523	109996961	23854934	787	32051										
TRPV4	0	genome.wustl.edu	37	chr12	110236432	110236432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cactcaccccaatcttgcccGtcttggcagccatcatgagg	8	16	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	110236432	110236432	G	A	SNP	TRPV4	ENST00000261740	human	ensembl	69_37n	-1	known	missense	c.1139	p.T380M	0.972	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199	38	0	0	19	9	32.14	-	-	-	A	110236432	G	A	110236432	3	1	281	1	0	0	0	0	1	0	0	0	16694	1145	40	1	1520	1	TRPV4	12	110236432	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	239471	110236432	23615463	788	32052										
IFT81	0	genome.wustl.edu	37	chr12	110655886	110655886	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaaagttatacgagaaagtcAtggtccaaatatgaaacaag	8	5	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	110655886	110655886	A	G	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.1886	p.H629R	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	64	0	0	75	16	17.58	-	-	-	G	110655886	A	G	110655886	3	3	281	1	0	0	0	0	1	0	0	0	7619	217	8	5	2068	5	IFT81	12	110655886	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	419454	110655886	23196009	789	32053										
SH2B3	0	genome.wustl.edu	37	chr12	111885211	111885211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctgctacccctggttccacGgccccatctccagagtgaaa	8	17	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	111885211	111885211	G	A	SNP	SH2B3	ENST00000538307	human	ensembl	69_37n	1	known	missense	c.493	p.G165S	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252	92	0	0	56	25	30.86	-	-	-	A	111885211	G	A	111885211	3	1	281	1	0	0	0	0	1	0	0	0	14317	1116	39	1	1117	1	SH2B3	12	111885211	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1229325	111885211	21966684	790	32054										
ATXN2	0	genome.wustl.edu	37	chr12	111954048	111954048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggtctggatggccgcgaggGgggcctggagggcggccgtg	24	9	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	111954048	111954048	G	T	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.1765	p.P589T	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	26	0	0	20	5	20	-	-	-	T	111954048	G	T	111954048	3	4	281	1	0	0	0	0	1	0	0	0	1215	1232	43	4	2240	4	ATXN2	12	111954048	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	68837	111954048	21897847	791	32055										
BRAP	0	genome.wustl.edu	37	chr12	112121100	112121100	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttttttatctcctcatcagAcatttccccggctaaagaac	4	13	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	112121100	112121100	A	C	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.94	p.S32A	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	200	0	0	71	54	42.86	-	-	-	C	112121100	A	C	112121100	3	2	281	1	0	0	0	0	1	0	0	0	1505	275	10	5	1728	5	BRAP	12	112121100	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	167052	112121100	21730795	792	32056										
NAA25	0	genome.wustl.edu	37	chr12	112481586	112481586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggttgagacttggaagtccaCttatcagcctcaatgttaag	10	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	112481586	112481586	C	T	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	missense	c.2093	p.S698N	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	181	0	0	137	41	23.03	-	-	-	T	112481586	C	T	112481586	3	4	281	1	0	0	0	0	1	0	0	0	10193	565	20	4	853	4	NAA25	12	112481586	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	360486	112481586	21370309	793	32057										
PTPN11	0	genome.wustl.edu	37	chr12	112915489	112915489	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttgtcctacacgatggtgaTcccaatgagcctgtttcaga	10	10	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	112915489	112915489	T	C	SNP	PTPN11	ENST00000351677	human	ensembl	69_37n	1	known	silent	c.888	p.D296	0.996	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295	140	0	0	152	27	15.08	-	-	-	C	112915489	T	C	112915489	2	2	281	1	0	0	0	0	0	0	0	1	12861	1432	50	5		5	PTPN11	12	112915489	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	433903	112915489	20936406	794	32058										
RASAL1	0	genome.wustl.edu	37	chr12	113545943	113545943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggtccgcgtgttggtcccGaaggtcaaacagctttgggg	17	9	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	113545943	113545943	G	A	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.1462	p.R488W	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	31	0	0	11	5	31.25	-	-	-	A	113545943	G	A	113545943	3	1	281	1	0	0	0	0	1	0	0	0	13146	1057	37	1	987	1	RASAL1	12	113545943	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	630454	113545943	20305952	795	32059										
DDX54	0	genome.wustl.edu	37	chr12	113618756	113618758	+	In_Frame_Del	DEL	CTT	CTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atggactggaagcctccagaCttcttcttcttcttgttctg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	113618756	113618758	CTT	-	DEL	DDX54	ENST00000314045	human	ensembl	69_37n	-1	known	in_frame_del	c.282_280	p.K94in_frame_del	0.990:1.000:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064	95	0	0	53	6	10.17	-	-	-	-	113618758	CTT	-	113618756	7	5	281	1	0	1	0	1	0	0	0	0	4403	564	20	0	2442	0	DDX54	12	113618756	In_Frame_Del	DEL	CTT	TCGA-AN-A0AK-01A-21W-A019-09	72813	113618756	20233139	796	32060										
FBXO21	0	genome.wustl.edu	37	chr12	117610351	117610351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagtgggactcccaactgcCgagcaattgtcaaatagagc	10	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	117610351	117610351	C	A	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.938	p.R313L	1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	175	0	0	151	28	15.64	-	-	-	A	117610351	C	A	117610351	3	1	281	1	0	0	0	0	1	0	0	0	5779	652	23	3	972	3	FBXO21	12	117610351	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3991595	117610351	16241544	797	32061										
CIT	0	genome.wustl.edu	37	chr12	120152115	120152115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaggaatattgtggtgcatgCgttccttaagacgccgacta	12	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	120152115	120152115	C	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.4067	p.R1356H	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	91	0	0	110	26	19.12	-	-	-	T	120152115	C	T	120152115	3	4	281	1	0	0	0	0	1	0	0	0	3468	768	27	1	2080	1	CIT	12	120152115	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2541764	120152115	13699780	798	32062										
GCN1L1	0	genome.wustl.edu	37	chr12	120575568	120575568	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tactcgatgatgatccggtgCcctgtgtcatcctctacgga	10	12	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	120575568	120575568	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	silent	c.6444	p.G2148	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	68	0	0	46	13	22.03	-	-	-	T	120575568	C	T	120575568	2	4	281	1	0	0	0	0	0	0	0	1	6349	726	26	4		4	GCN1L1	12	120575568	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	423453	120575568	13276327	799	32063										
HNF1A	0	genome.wustl.edu	37	chr12	121431449	121431449	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagatcctgttccaggcctAtgagaggcagaagaacccta	11	11	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	121431449	121431449	A	G	SNP	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	missense	c.653	p.Y218C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	54	0	0	32	21	39.62	-	-	-	G	121431449	A	G	121431449	3	3	281	1	0	0	0	0	1	0	0	0	7302	449	16	5	663	5	HNF1A	12	121431449	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	855881	121431449	12420446	800	32064										
SBNO1	0	genome.wustl.edu	37	chr12	123813396	123813396	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtagcaaaaataacacccTttttcacactcccattatgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	123813396	123813396	T	-	DEL	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	frame_shift_del	c.1181	p.K394fs	1.000	pfam_Helicase/UvrB_dom	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	104	0	0	112	27	19.15	-	-	-	-	123813396	T	-	123813396	7	5	281	1	0	1	0	1	0	0	0	0	13949	1609	56	0	3092	0	SBNO1	12	123813396	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2381947	123813396	10038499	801	32065										
DNAH10	0	genome.wustl.edu	37	chr12	124350591	124350591	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaaatatcgaccatactggAaaaaatgggttaatcaaata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	124350591	124350591	A	-	DEL	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	frame_shift_del	c.6784	p.K2263fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	94	0	0	77	17	18.09	-	-	-	-	124350591	A	-	124350591	7	5	281	1	0	1	0	1	0	0	0	0	4634	247	9	0	6942	0	DNAH10	12	124350591	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	537195	124350591	9501304	802	32066										
TMEM132B	0	genome.wustl.edu	37	chr12	125834236	125834236	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttcagtggagaagataatCccccaggagctcctgttgac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	125834236	125834236	C	-	DEL	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	frame_shift_del	c.291	p.Q99fs	0.287	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	279	0	0	236	48	16.67	-	-	-	-	125834236	C	-	125834236	7	5	281	1	0	1	0	1	0	0	0	0	16141	845	30	0	297	0	TMEM132B	12	125834236	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1483645	125834236	8017659	803	32067										
EP400	0	genome.wustl.edu	37	chr12	132554138	132554138	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttcttaccacacccatctcCcaggcccagaaactggccgg	7	17	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	132554138	132554138	C	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	silent	c.9081	p.S3027	0.671	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	154	0	0	90	23	20.35	-	-	-	A	132554138	C	A	132554138	2	1	281	1	0	0	0	0	0	0	0	1	5186	610	22	4		4	EP400	12	132554138	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6719902	132554138	1297757	804	32068										
ANKLE2	0	genome.wustl.edu	37	chr12	133306759	133306759	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaaaagcaccgactgtgggCgggctgttatttcgagctgc	13	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	133306759	133306759	C	T	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	silent	c.1989	p.P663	0.000	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	13	0	0	14	7	33.33	-	-	-	T	133306759	C	T	133306759	2	4	281	1	0	0	0	0	0	0	0	1	633	755	27	1		1	ANKLE2	12	133306759	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	752621	133306759	545136	805	32069										
ZNF268	0	genome.wustl.edu	37	chr12	133780595	133780595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttcacatcagcgaactcatGcaggggaaaagccttatggg	11	9	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	12	133780595	133780595	G	A	SNP	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	missense	c.2323	p.A775T	0.884	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	57	0	0	31	7	18.42	-	-	-	A	133780595	G	A	133780595	3	1	281	1	0	0	0	0	1	0	0	0	17903	1319	46	4		4	ZNF268	12	133780595	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	473836	133780595	71300	806	32070										
ZMYM2	0	genome.wustl.edu	37	chr13	20625720	20625720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acatgacaactcagaaaggaCctgaaaacttacattatggt	7	8	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	20625720	20625720	C	T	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.2440	p.P814S	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	81	0	0	55	29	34.52	-	-	-	T	20625720	C	T	20625720	3	4	281	1	0	0	0	0	1	0	0	0	17796	507	18	4	2482	4	ZMYM2	13	20625720	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		20625720	94544158	807	32071										
ZDHHC20	0	genome.wustl.edu	37	chr13	21965870	21965870	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacctacttacctattgttgTtctattttttccaactagcc	3	11	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	21965870	21965870	T	C	SNP	ZDHHC20	ENST00000400590	human	ensembl	69_37n	-1	known	missense	c.718	p.T240A	0.999	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776	142	1	0.7	116	86	42.57	-	-	-	C	21965870	T	C	21965870	3	2	281	1	0	0	0	0	1	0	0	0	17707	1725	60	5	366	5	ZDHHC20	13	21965870	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1340150	21965870	93204008	808	32072										
PABPC3	0	genome.wustl.edu	37	chr13	25671803	25671804	+	In_Frame_Ins	INS	-	-	GCT													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagtgggtccacgtcctgcaINSgctgctgctgctgctgcagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	25671803	25671804	-	GCT	INS	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	in_frame_ins	c.1467_1468	p.493in_frame_insA	0.985:0.993	superfamily_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	110	0	0	120	14	10.45	-	-	-	GCT	25671804	-	GCT	25671803	7	5	281	1	0	1	1	0	0	0	0	0	11438	175	7	0	1469	0	PABPC3	13	25671803	In_Frame_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	3705933	25671803	89498075	809	32073										
WASF3	0	genome.wustl.edu	37	chr13	27255387	27255387	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaacagacctcagcagccgCcccccccgcctccccctcag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	27255387	27255387	C	-	DEL	WASF3	ENST00000335327	human	ensembl	69_37n	1	known	frame_shift_del	c.913	p.P307fs	0.975	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970	48	0	0	43	15	24.19	-	-	-	-	27255387	C	-	27255387	7	5	281	1	0	1	0	1	0	0	0	0	17351	739	26	0	935	0	WASF3	13	27255387	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1583584	27255387	87914491	810	32074										
PRHOXNB	0	genome.wustl.edu	37	chr13	28562744	28562744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacatccacgaattctccaaGgtccatggagttgaccttct	7	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	28562744	28562744	G	T	SNP	PRHOXNB	ENST00000332715	human	ensembl	69_37n	-1	known	missense	c.31	p.L11I	0.965	pfam_OHCU_decarboxylase,tigrfam_OHCU_decarboxylase-1	pfam_OHCU_decarboxylase,tigrfam_OHCU_decarboxylase-1	-	no_errors	PRHOXNB	HGNC	ENSG00000183463	49	0	0	21	14	40	-	-	-	T	28562744	G	T	28562744	3	4	281	1	0	0	0	0	1	0	0	0	12565	1000	35	4	498	4	PRHOXNB	13	28562744	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1307357	28562744	86607134	811	32075										
KL	0	genome.wustl.edu	37	chr13	33638251	33638252	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggctttcatagcttttctaINSttttttgcttctattatttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	33638251	33638252	-	T	INS	KL	ENST00000380099	human	ensembl	69_37n	1	known	frame_shift_ins	c.2967_2968	p.A991fs	0.002:0.000	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	144	0	0	146	35	19.34	-	-	-	T	33638252	-	T	33638251	7	5	281	1	0	1	1	0	0	0	0	0	8384	436	16	0	2985	0	KL	13	33638251	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5075507	33638251	81531627	812	32076										
SMAD9	0	genome.wustl.edu	37	chr13	37453453	37453453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtagtggtaagggttaatgCacacttctttctgcttggag	13	6	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	37453453	37453453	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.374	p.C125Y	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	49	0	0	61	11	15.28	-	-	-	T	37453453	C	T	37453453	3	4	281	1	0	0	0	0	1	0	0	0	14853	710	25	4	1053	4	SMAD9	13	37453453	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3815202	37453453	77716425	813	32077										
ALG5	0	genome.wustl.edu	37	chr13	37539835	37539835	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaccagaaagtggaacccaTacatgagaagagtacggaag	11	8	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	37539835	37539835	T	C	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.650	p.Y217C	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	241	0	0	246	64	20.65	-	-	-	C	37539835	T	C	37539835	3	2	281	1	0	0	0	0	1	0	0	0	521	1406	49	5	336	5	ALG5	13	37539835	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	86382	37539835	77630043	814	32078										
POSTN	0	genome.wustl.edu	37	chr13	38138662	38138663	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaatacacttaccttgaacINSttttttgttggcttgcaact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	38138662	38138663	-	T	INS	POSTN	ENST00000379747	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2467_2466	p.V822fs	0.956:0.969	NULL	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	76	0	0	103	13	11.21	-	-	-	T	38138663	-	T	38138662	7	5	281	1	0	1	1	0	0	0	0	0	12333	565	20	0	51	0	POSTN	13	38138662	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	598827	38138662	77031216	815	32079										
FREM2	0	genome.wustl.edu	37	chr13	39265314	39265314	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gacccaggaagacagttttgTgattaaactaacagatggga	11	6	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	39265314	39265314	T	C	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.3833	p.V1278A	0.859	superfamily_Cadherin-like	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	255	0	0	163	78	32.37	-	-	-	C	39265314	T	C	39265314	3	2	281	1	0	0	0	0	1	0	0	0	6094	1696	59	5	3835	5	FREM2	13	39265314	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1126652	39265314	75904564	816	32080										
COG6	0	genome.wustl.edu	37	chr13	40253985	40253986	+	RNA	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttaattgtagaaaattattgINSaaaaatcatcccataaaatg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	40253985	40253986	-	A	INS	COG6	ENST00000465775	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	COG6	HGNC	ENSG00000133103	27	0	0	27	7	20.59	-	-	-	A	40253986	-	A	40253985	6	5	281	0	1	1	1	0	0	0	0	0	3692	1305	45	0		0	COG6	13	40253985	RNA	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	988671	40253985	74915893	817	32081										
EPSTI1	0	genome.wustl.edu	37	chr13	43500514	43500514	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaacagcactttgacaggcActtctgtctggcgattctgt	9	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	43500514	43500514	A	G	SNP	EPSTI1	ENST00000313640	human	ensembl	69_37n	-1	known	silent	c.615	p.S205	0.000	NULL	NULL	-	no_errors	EPSTI1	HGNC	ENSG00000133106	914	0	0	636	319	33.3	-	-	-	G	43500514	A	G	43500514	2	3	281	1	0	0	0	0	0	0	0	1	5235	156	6	5		5	EPSTI1	13	43500514	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3246529	43500514	71669364	818	32082										
ZC3H13	0	genome.wustl.edu	37	chr13	46549846	46549847	+	Frame_Shift_Ins	INS	-	-	TC													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtctcgttctcgttcccgaINStctctctctctagccctttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	46549846	46549847	-	TC	INS	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2040_2039	p.D680fs	0.949:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	177	0	0	203	35	14.71	-	-	-	TC	46549847	-	TC	46549846	7	5	281	1	0	1	1	0	0	0	0	0	17661	330	12	0	2678	0	ZC3H13	13	46549846	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	3049332	46549846	68620032	819	32083										
LRCH1	0	genome.wustl.edu	37	chr13	47297426	47297426	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atccggaggaaaatggagcaGatgagagaagagaaagagct	15	4	0	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	47297426	47297426	G	T	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.1725	p.Q575H	1.000	superfamily_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	107	0	0	84	20	19.23	-	-	-	T	47297426	G	T	47297426	3	4	281	1	0	0	0	0	1	0	0	0	8998	933	33	2	1896	2	LRCH1	13	47297426	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	747580	47297426	67872452	820	32084										
MED4	0	genome.wustl.edu	37	chr13	48651422	48651422	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcgacatgtcatttgactgCcatggatactgtggagcaag	11	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	48651422	48651422	C	T	SNP	MED4	ENST00000258648	human	ensembl	69_37n	-1	known	nonsense	c.666	p.W222*	1.000	NULL	pfam_Mediator_Med4	-	no_errors	MED4	HGNC	ENSG00000136146	124	0	0	95	20	17.39	-	-	-	T	48651422	C	T	48651422	4	4	281	1	0	0	0	0	0	1	0	0	9521	740	26	4	150	4	MED4	13	48651422	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1353996	48651422	66518456	821	32085										
FNDC3A	0	genome.wustl.edu	37	chr13	49772248	49772250	+	In_Frame_Del	DEL	CTT	CTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaaaatccccattattcacCttctacatgccttgcaataa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	49772248	49772250	CTT	-	DEL	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	in_frame_del	c.2621_2623	p.S875in_frame_del	1.000:1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	201	0	0	180	32	15.09	-	-	-	-	49772250	CTT	-	49772248	7	5	281	1	0	1	0	1	0	0	0	0	6015	681	24	0	2714	0	FNDC3A	13	49772248	In_Frame_Del	DEL	CTT	TCGA-AN-A0AK-01A-21W-A019-09	1120826	49772248	65397630	822	32086										
KPNA3	0	genome.wustl.edu	37	chr13	50279782	50279782	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cattcctctattatttcagcTattgtgcttgcttcatcacc	4	12	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	50279782	50279782	T	C	SNP	KPNA3	ENST00000261667	human	ensembl	69_37n	-1	known	missense	c.1347	p.I449M	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753	160	0	0	144	42	22.58	-	-	-	C	50279782	T	C	50279782	3	2	281	1	0	0	0	0	1	0	0	0	8484	1512	53	5	230	5	KPNA3	13	50279782	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	507534	50279782	64890096	823	32087										
FAM124A	0	genome.wustl.edu	37	chr13	51855067	51855067	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcacccagtaggttctgcaGcacagtggagacacccctcc	10	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	51855067	51855067	G	C	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	missense	c.1424	p.S475T	0.026	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	88	0	0	78	11	12.36	-	-	-	C	51855067	G	C	51855067	3	2	281	1	0	0	0	0	1	0	0	0	5465	971	34	4	1442	4	FAM124A	13	51855067	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1575285	51855067	63314811	824	32088										
OLFM4	0	genome.wustl.edu	37	chr13	53624266	53624266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccattgaatacagatgggaGactgttggagtattatagac	12	5	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	53624266	53624266	G	A	SNP	OLFM4	ENST00000219022	human	ensembl	69_37n	1	known	missense	c.893	p.R298K	0.250	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837	256	0	0	195	54	21.6	-	-	-	A	53624266	G	A	53624266	3	1	281	1	0	0	0	0	1	0	0	0	10928	942	33	2	911	2	OLFM4	13	53624266	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1769199	53624266	61545612	825	32089										
PCDH17	0	genome.wustl.edu	37	chr13	58299309	58299309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggtgctgttcttgagcagCttgaccaccccaacagggat	12	11	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	58299309	58299309	C	A	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	missense	c.3361	p.L1121I	0.747	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	218	0	0	175	33	15.87	-	-	-	A	58299309	C	A	58299309	3	1	281	1	0	0	0	0	1	0	0	0	11585	797	28	4	3375	4	PCDH17	13	58299309	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4675043	58299309	56870569	826	32090										
DIS3	0	genome.wustl.edu	37	chr13	73337683	73337684	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcagaaaattcctcatgaaINSttttttttgcaacagaaata							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	73337683	73337684	-	T	INS	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2033_2032	p.I678fs	1.000:1.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	164	0	0	124	27	17.88	-	-	-	T	73337684	-	T	73337683	7	5	281	1	0	1	1	0	0	0	0	0	4571	101	4	0	867	0	DIS3	13	73337683	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	15038374	73337683	41832195	827	32091										
KLF12	0	genome.wustl.edu	37	chr13	74387010	74387010	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgacattcaaaaataacaaTttttttttttttgcagagtt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	74387010	74387010	T	-	DEL	KLF12	ENST00000472022	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KLF12	HGNC	ENSG00000118922	20	0	0	14	5	26.32	-	-	-	-	74387010	T	-	74387010	6	5	281	0	1	1	0	1	0	0	0	0	8393	1508	52	0		0	KLF12	13	74387010	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1049327	74387010	40782868	828	32092										
TBC1D4	0	genome.wustl.edu	37	chr13	75933922	75933922	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacctgagaacaagaggagaTatctttaaaattcttttcta	6	6	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	75933922	75933922	T	A	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.1153	p.I385F	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	103	0	0	111	27	19.42	-	-	-	A	75933922	T	A	75933922	3	1	281	1	0	0	0	0	1	0	0	0	15717	1406	49	5	2819	5	TBC1D4	13	75933922	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1546912	75933922	39235956	829	32093										
LMO7	0	genome.wustl.edu	37	chr13	76415789	76415789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatggtcctaagctcaaacaGcatgtctctgaccacacggg	10	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	76415789	76415789	G	A	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	missense	c.3857	p.S1286N	0.001	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	221	0	0	141	88	38.43	-	-	-	A	76415789	G	A	76415789	3	1	281	1	0	0	0	0	1	0	0	0	8911	971	34	4	3955	4	LMO7	13	76415789	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	481867	76415789	38754089	830	32094										
SCEL	0	genome.wustl.edu	37	chr13	78191973	78191973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taacctcatcaaagtaaatcCtgcagtaatcagaaacaatc	4	10	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	78191973	78191973	C	A	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.1547	p.P516H	0.003	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	336	0	0	354	78	18.06	-	-	-	A	78191973	C	A	78191973	3	1	281	1	0	0	0	0	1	0	0	0	13975	681	24	4	1645	4	SCEL	13	78191973	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1776184	78191973	36977905	831	32095										
RBM26	0	genome.wustl.edu	37	chr13	79940836	79940836	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggcctgagattcacaggtGggggtgtaagaattggtgga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	79940836	79940836	G	-	DEL	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	frame_shift_del	c.1067	p.P356fs	1.000	NULL	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	35	0	0	47	12	19.05	-	-	-	-	79940836	G	-	79940836	7	5	281	1	0	1	0	1	0	0	0	0	13209	1348	47	0	1935	0	RBM26	13	79940836	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1748863	79940836	35229042	832	32096										
DCT	0	genome.wustl.edu	37	chr13	95117943	95117943	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccgactaatcagagtcggAtcgtctggtctcgctgcccc	10	14	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	95117943	95117943	A	T	SNP	DCT	ENST00000446125	human	ensembl	69_37n	-1	known	missense	c.807	p.D269E	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	76	0	0	86	12	12.24	-	-	-	T	95117943	A	T	95117943	3	4	281	1	0	0	0	0	1	0	0	0	4335	330	12	5	879	5	DCT	13	95117943	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	15177107	95117943	20051935	833	32097										
ABCC4	0	genome.wustl.edu	37	chr13	95725651	95725651	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagaggaacccttcataatGttgaaacaattcacatttaa	5	8	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	13	95725651	95725651	G	A	SNP	ABCC4	ENST00000474158	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCC4	HGNC	ENSG00000125257	63	0	0	91	12	11.65	-	-	-	A	95725651	G	A	95725651	1	1	281	0	1	0	0	0	0	0	0	0	55	1392	48	4		4	ABCC4	13	95725651	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	607708	95725651	19444227	834	32098										
OR4K5	0	genome.wustl.edu	37	chr14	20389601	20389601	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catattttacactgttttcaCccccgtcctaaaccccatta							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	20389601	20389601	C	-	DEL	OR4K5	ENST00000315915	human	ensembl	69_37n	1	known	frame_shift_del	c.836	p.V281fs	0.470	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K5	HGNC	ENSG00000176281	593	0	0	550	64	10.39	-	-	-	-	20389601	C	-	20389601	7	5	281	1	0	1	0	1	0	0	0	0	11146	507	18	0	838	0	OR4K5	14	20389601	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09		20389601	86959939	835	32099										
PARP2	0	genome.wustl.edu	37	chr14	20820718	20820718	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcccagctgattttttttcTtttttttttgtaaagatgag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	20820718	20820718	T	-	DEL	PARP2	ENST00000555140	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	PARP2	HGNC	ENSG00000129484	21	0	0	23	8	25.81	-	-	-	-	20820718	T	-	20820718	6	5	281	0	1	1	0	1	0	0	0	0	11534	1624	56	0		0	PARP2	14	20820718	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	431117	20820718	86528822	836	32100										
OR5AU1	0	genome.wustl.edu	37	chr14	21623944	21623944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtgtacatgcccaggaacaCcacgaagagcagcctctgga	11	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	21623944	21623944	C	T	SNP	OR5AU1	ENST00000304418	human	ensembl	69_37n	-1	known	missense	c.241	p.V81M	0.038	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	138	0	0	117	23	16.43	-	-	-	T	21623944	C	T	21623944	3	4	281	1	0	0	0	0	1	0	0	0	11220	507	18	4	850	4	OR5AU1	14	21623944	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	803226	21623944	85725596	837	32101										
SLC7A7	0	genome.wustl.edu	37	chr14	23243598	23243598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcgatcaggctccttccagcGcagataaagctgacccacaa	8	14	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	23243598	23243598	G	A	SNP	SLC7A7	ENST00000285850	human	ensembl	69_37n	-1	known	missense	c.1210	p.R404C	1.000	pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A7	HGNC	ENSG00000155465	378	0	0	240	89	27.05	-	-	-	A	23243598	G	A	23243598	3	1	281	1	0	0	0	0	1	0	0	0	14792	1087	38	1	337	1	SLC7A7	14	23243598	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1619654	23243598	84105942	838	32102										
JPH4	0	genome.wustl.edu	37	chr14	24040653	24040653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgtcggaaccttctgagtcCtgcctgggtctgcggcctgg	15	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	24040653	24040653	C	A	SNP	JPH4	ENST00000356300	human	ensembl	69_37n	-1	known	missense	c.1287	p.Q429H	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051	151	0	0	39	60	60.61	-	-	-	A	24040653	C	A	24040653	3	1	281	1	0	0	0	0	1	0	0	0	8017	680	24	4	607	4	JPH4	14	24040653	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	797055	24040653	83308887	839	32103										
ADCY4	0	genome.wustl.edu	37	chr14	24799203	24799203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacgcatgttgatgtccacGccagtggctgcccgcagttt	11	13	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	24799203	24799203	G	A	SNP	ADCY4	ENST00000554781	human	ensembl	69_37n	-1	known	missense	c.1112	p.A371V	0.483	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	73	0	0	29	14	32.56	-	-	-	A	24799203	G	A	24799203	3	1	281	1	0	0	0	0	1	0	0	0	296	1074	38	1	2225	1	ADCY4	14	24799203	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	758550	24799203	82550337	840	32104										
PAX9	0	genome.wustl.edu	37	chr14	37145652	37145652	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attctgtcacggcttccgcgCtctgatgggaaattccgtct	10	12	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	37145652	37145652	C	G	SNP	PAX9	ENST00000361487	human	ensembl	69_37n	1	known	missense	c.1021	p.L341V	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807	71	0	0	67	23	25.56	-	-	-	G	37145652	C	G	37145652	3	3	281	1	0	0	0	0	1	0	0	0	11559	797	28	4	1035	4	PAX9	14	37145652	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	12346449	37145652	70203888	841	32105										
FANCM	0	genome.wustl.edu	37	chr14	45658248	45658250	+	In_Frame_Del	DEL	GAG	GAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttaccagatgattcaagtGaggaggagaacaatgtaaat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	45658248	45658250	GAG	-	DEL	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	in_frame_del	c.5023_5025	p.E1677in_frame_del	1.000:1.000:0.997	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	216	0	0	155	21	11.93	-	-	-	-	45658250	GAG	-	45658248	7	5	281	1	0	1	0	1	0	0	0	0	5717	1291	45	0	5101	0	FANCM	14	45658248	In_Frame_Del	DEL	GAG	TCGA-AN-A0AK-01A-21W-A019-09	8512596	45658248	61691292	842	32106										
ATL1	0	genome.wustl.edu	37	chr14	51062310	51062310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctagcttttcactgagtatgGcagactggcaatggaggaaa	12	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	51062310	51062310	G	A	SNP	ATL1	ENST00000357032	human	ensembl	69_37n	1	known	missense	c.590	p.G197D	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513	84	0	0	81	29	26.13	-	-	-	A	51062310	G	A	51062310	3	1	281	1	0	0	0	0	1	0	0	0	1110	1203	42	4	612	4	ATL1	14	51062310	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5404062	51062310	56287230	843	32107										
ATL1	0	genome.wustl.edu	37	chr14	51080061	51080061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgccaaattcttggaaaaaCgcctcaaggtttgttagata	9	7	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	51080061	51080061	C	T	SNP	ATL1	ENST00000357032	human	ensembl	69_37n	1	known	missense	c.715	p.R239C	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513	76	0	0	54	12	18.18	-	-	-	T	51080061	C	T	51080061	3	4	281	1	0	0	0	0	1	0	0	0	1110	536	19	1	741	1	ATL1	14	51080061	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	17751	51080061	56269479	844	32108										
SAV1	0	genome.wustl.edu	37	chr14	51101903	51101903	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatttttaaaaaatcagctcAaaaattttttccatgttgtt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	51101903	51101903	A	-	DEL	SAV1	ENST00000324679	human	ensembl	69_37n	-1	known	frame_shift_del	c.1150	p.*384fs	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_SARAH,pfscan_WW_Rsp5_WWP	-	no_errors	SAV1	HGNC	ENSG00000151748	89	0	0	78	9	10.34	-	-	-	-	51101903	A	-	51101903	7	5	281	1	0	1	0	1	0	0	0	0	13943	143	5	0	5	0	SAV1	14	51101903	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	21842	51101903	56247637	845	32109										
NIN	0	genome.wustl.edu	37	chr14	51224180	51224180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagctcccaggattcagtccTggtctcttcactgttttcaa	7	13	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	51224180	51224180	T	C	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.3568	p.R1190G	0.689	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	275	0	0	218	56	20.44	-	-	-	C	51224180	T	C	51224180	3	2	281	1	0	0	0	0	1	0	0	0	10489	1579	55	5	3037	5	NIN	14	51224180	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	122277	51224180	56125360	846	32110										
NID2	0	genome.wustl.edu	37	chr14	52481992	52481992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgggggcctctgggtgggCtctgagcagatggggaagag	21	7	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	52481992	52481992	C	T	SNP	NID2	ENST00000556572	human	ensembl	69_37n	-1	novel	missense	c.835	p.A279T	1.000	superfamily_Thyroglobulin_1	pfam_LDLR_classB_rpt,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Thyroglobulin_1,superfamily_Green_fluorescent_prot-like,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NID2	HGNC	ENSG00000087303	61	0	0	25	16	39.02	-	-	-	T	52481992	C	T	52481992	3	4	281	1	0	0	0	0	1	0	0	0	10487	811	28	4	1129	4	NID2	14	52481992	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1257812	52481992	54867548	847	32111										
LGALS3	0	genome.wustl.edu	37	chr14	55604413	55604413	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgagtagcgggaagtgcgGtacagtctgggcattctgat	15	7	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	55604413	55604413	G	A	SNP	LGALS3	ENST00000556322	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	LGALS3	HGNC	ENSG00000131981	21	0	0	7	3	30	-	-	-	A	55604413	G	A	55604413	5	1	281	1	0	0	0	0	0	0	1	0	8797	1276	44	4		4	LGALS3	14	55604413	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3122421	55604413	51745127	848	32112										
DAAM1	0	genome.wustl.edu	37	chr14	59835466	59835468	+	In_Frame_Del	DEL	AGG	AGG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttgtttcagctttacgctcAggagaagtgtttgacaaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	59835466	59835468	AGG	-	DEL	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	in_frame_del	c.3126_3128	p.G1043in_frame_del	0.708:1.000:1.000	smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	148	0	0	53	38	41.3	-	-	-	-	59835468	AGG	-	59835466	7	5	281	1	0	1	0	1	0	0	0	0	4247	175	7	0	3224	0	DAAM1	14	59835466	In_Frame_Del	DEL	AGG	TCGA-AN-A0AK-01A-21W-A019-09	4231053	59835466	47514074	849	32113										
RHOJ	0	genome.wustl.edu	37	chr14	63757752	63757752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caattatctgaggttgtctgGgacctgcctccaccccatcc	8	15	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	63757752	63757752	G	T	SNP	RHOJ	ENST00000557447	human	ensembl	69_37n	1	known	missense	c.312	p.W104C	0.007	smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOJ	HGNC	ENSG00000126785	73	0	0	39	26	40	-	-	-	T	63757752	G	T	63757752	3	4	281	1	0	0	0	0	1	0	0	0	13425	1247	43	4		4	RHOJ	14	63757752	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3922286	63757752	43591788	850	32114										
SYNE2	0	genome.wustl.edu	37	chr14	64443312	64443312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaaataaagctaaattatgCcttgcccccacccctccatc	4	15	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	64443312	64443312	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.1160	p.A387V	0.008	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	294	2	0.67	263	72	21.49	-	-	-	T	64443312	C	T	64443312	3	4	281	1	0	0	0	0	1	0	0	0	15538	739	26	4	1202	4	SYNE2	14	64443312	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	685560	64443312	42906228	851	32115										
ZFYVE26	0	genome.wustl.edu	37	chr14	68238793	68238793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgctccctgcagcagaccaTgcagatactctcagtctcat	8	14	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	68238793	68238793	T	C	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.5455	p.M1819V	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	32	0	0	14	5	26.32	-	-	-	C	68238793	T	C	68238793	3	2	281	1	0	0	0	0	1	0	0	0	17764	1464	51	5	2224	5	ZFYVE26	14	68238793	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	3795481	68238793	39110747	852	32116										
PCNX	0	genome.wustl.edu	37	chr14	71568810	71568810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcccatgaaggggaccctgCatggcggagtgcagtacttg	15	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	71568810	71568810	C	T	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.5693	p.A1898V	1.000	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	222	1	0.45	135	36	21.05	-	-	-	T	71568810	C	T	71568810	3	4	281	1	0	0	0	0	1	0	0	0	11664	710	25	4	5815	4	PCNX	14	71568810	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3330017	71568810	35780730	853	32117										
RGS6	0	genome.wustl.edu	37	chr14	73002973	73002973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttaccaggatttgctgctggCcaagaagaaggtatctttgg	12	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	73002973	73002973	C	T	SNP	RGS6	ENST00000553525	human	ensembl	69_37n	1	known	missense	c.1358	p.A453V	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS6	HGNC	ENSG00000182732	148	0	0	100	30	23.08	-	-	-	T	73002973	C	T	73002973	3	4	281	1	0	0	0	0	1	0	0	0	13393	739	26	4	1416	4	RGS6	14	73002973	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1434163	73002973	34346567	854	32118										
NUMB	0	genome.wustl.edu	37	chr14	73746055	73746055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcccaagggttggtttcacGcacaggcattgctacgggtg	15	10	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	73746055	73746055	G	A	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	missense	c.1174	p.R392C	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	57	0	0	31	7	18.42	-	-	-	A	73746055	G	A	73746055	3	1	281	1	0	0	0	0	1	0	0	0	10824	1087	38	1	789	1	NUMB	14	73746055	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	743082	73746055	33603485	855	32119										
C14orf43	0	genome.wustl.edu	37	chr14	74205773	74205773	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgggttcatatctgggttGggggggaaggggtagggtgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	74205773	74205773	G	-	DEL	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	frame_shift_del	c.939	p.N314fs	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	24	0	0	11	6	35.29	-	-	-	-	74205773	G	-	74205773	7	5	281	1	0	1	0	1	0	0	0	0	1786	1335	47	0	2242	0	C14orf43	14	74205773	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	459718	74205773	33143767	856	32120										
TTLL5	0	genome.wustl.edu	37	chr14	76173408	76173408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attttggtctcccgttacatTaacaaccccctgctcataga	5	13	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	76173408	76173408	T	C	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	silent	c.633	p.I211	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	192	0	0	155	40	20.51	-	-	-	C	76173408	T	C	76173408	2	2	281	1	0	0	0	0	0	0	0	1	16827	1742	61	5		5	TTLL5	14	76173408	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1967635	76173408	31176132	857	32121										
SEL1L	0	genome.wustl.edu	37	chr14	81956740	81956740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaaagccttaccatgtcagCagctttcttaaagtagtgga	8	9	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	81956740	81956740	C	T	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	missense	c.1324	p.A442T	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537	142	0	0	105	27	20.45	-	-	-	T	81956740	C	T	81956740	3	4	281	1	0	0	0	0	1	0	0	0	14098	710	25	4	1096	4	SEL1L	14	81956740	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5783332	81956740	25392800	858	32122										
GPR65	0	genome.wustl.edu	37	chr14	88477555	88477555	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgttgtctaccctttgaagTtttttttcctaaggacaaga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	88477555	88477555	T	-	DEL	GPR65	ENST00000267549	human	ensembl	69_37n	1	known	frame_shift_del	c.364	p.F124fs	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Psych_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Psych_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR65	HGNC	ENSG00000140030	374	1	0.27	261	63	19.38	-	-	-	-	88477555	T	-	88477555	7	5	281	1	0	1	0	1	0	0	0	0	6756	1725	60	0	366	0	GPR65	14	88477555	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	6520815	88477555	18871985	859	32123										
RIN3	0	genome.wustl.edu	37	chr14	93118043	93118043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaggcccacagcccatgacGcaaactgtgcctgtgaaatc	9	14	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	93118043	93118043	G	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	missense	c.649	p.A217T	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	28	0	0	14	4	22.22	-	-	-	A	93118043	G	A	93118043	3	1	281	1	0	0	0	0	1	0	0	0	13459	1087	38	1	671	1	RIN3	14	93118043	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4640488	93118043	14231497	860	32124										
CCNK	0	genome.wustl.edu	37	chr14	99969204	99969204	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagccgtctcaaagctccgaAccatcccagccccagcagaa	7	18	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	99969204	99969204	A	G	SNP	CCNK	ENST00000389879	human	ensembl	69_37n	1	known	silent	c.894	p.E298	0.014	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNK	HGNC	ENSG00000090061	74	0	0	44	11	20	-	-	-	G	99969204	A	G	99969204	2	3	281	1	0	0	0	0	0	0	0	1	2959	40	2	5		5	CCNK	14	99969204	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	6851161	99969204	7380336	861	32125										
DYNC1H1	0	genome.wustl.edu	37	chr14	102505055	102505055	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgagttcccaccagatctCtgttcccgggttacttttgt	9	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	14	102505055	102505055	C	A	SNP	DYNC1H1	ENST00000553423	human	ensembl	69_37n	1	novel	missense	c.355	p.L119M	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DYNC1H1	HGNC	ENSG00000197102	154	0	0	92	16	14.81	-	-	-	A	102505055	C	A	102505055	3	1	281	1	0	0	0	0	1	0	0	0	4876	900	32	2	11310	2	DYNC1H1	14	102505055	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2535851	102505055	4844485	862	32126										
OR4N4	0	genome.wustl.edu	37	chr15	22383102	22383103	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcctgatgacactcctgtgcINStttctggggcttctggcttc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	22383102	22383103	-	T	INS	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	frame_shift_ins	c.630_631	p.L211fs	0.017:0.196	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	165	0	0	117	33	22	-	-	-	T	22383103	-	T	22383102	7	5	281	1	0	1	1	0	0	0	0	0	11151	805	28	0	632	0	OR4N4	15	22383102	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09		22383102	80148290	863	32127										
MKRN3	0	genome.wustl.edu	37	chr15	23812065	23812065	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcccagtgagttctgggtggAggaggaggaagagaagcaga	18	5	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	23812065	23812065	A	T	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.1136	p.E379V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	98	0	0	71	14	16.47	-	-	-	T	23812065	A	T	23812065	3	4	281	1	0	0	0	0	1	0	0	0	9679	304	11	5	1138	5	MKRN3	15	23812065	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1428963	23812065	78719327	864	32128										
GABRG3	0	genome.wustl.edu	37	chr15	27777921	27777921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggatcctggaggaaagggcGtattcacatagacatcttgg	13	7	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	27777921	27777921	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	69_37n	1	known	missense	c.1298	p.R433H	0.956	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	55	0	0	33	17	34	-	-	-	A	27777921	G	A	27777921	3	1	281	1	0	0	0	0	1	0	0	0	6222	1145	40	1	1336	1	GABRG3	15	27777921	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3965856	27777921	74753471	865	32129										
HERC2	0	genome.wustl.edu	37	chr15	28377860	28377860	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccggccgtagcggcctttgCcccatgtgtagaggtccccg	14	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	28377860	28377860	C	G	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.12347	p.G4116A	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	29	0	0	26	20	43.48	-	-	-	G	28377860	C	G	28377860	3	3	281	1	0	0	0	0	1	0	0	0	7109	739	26	4	2213	4	HERC2	15	28377860	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	599939	28377860	74153532	866	32130										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32929873	32929873	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcccttggatgatctgactAatcatgatatagtaaaacca	6	8	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	32929873	32929873	A	G	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	missense	c.2899	p.N967D	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	111	0	0	89	25	21.93	-	-	-	G	32929873	A	G	32929873	3	3	281	1	0	0	0	0	1	0	0	0	865	362	13	5	2968	5	ARHGAP11A	15	32929873	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	4552013	32929873	69601519	867	32131										
FAM98B	0	genome.wustl.edu	37	chr15	38762573	38762573	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaagtcaacaacttctgaCattccgcatatgctaaacca	4	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	38762573	38762573	C	T	SNP	FAM98B	ENST00000397609	human	ensembl	69_37n	1	known	silent	c.498	p.D166	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98B	HGNC	ENSG00000171262	41	0	0	38	13	25.49	-	-	-	T	38762573	C	T	38762573	2	4	281	1	0	0	0	0	0	0	0	1	5703	477	17	4		4	FAM98B	15	38762573	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5832700	38762573	63768819	868	32132										
THBS1	0	genome.wustl.edu	37	chr15	39885831	39885831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagggcctggcgagcacctgCggaacgccctgtggcacaca	14	15	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	39885831	39885831	C	T	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	missense	c.3229	p.R1077W	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	157	0	0	84	34	28.81	-	-	-	T	39885831	C	T	39885831	3	4	281	1	0	0	0	0	1	0	0	0	15948	759	27	1	3299	1	THBS1	15	39885831	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1123258	39885831	62645561	869	32133										
ZFYVE19	0	genome.wustl.edu	37	chr15	41101336	41101336	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtacggctgtaagaattgtgGcagggccttctgttcaggct	14	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	41101336	41101336	G	A	SNP	ZFYVE19	ENST00000568062	human	ensembl	69_37n	1	known	nonsense	c.279	p.W93*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE19	HGNC	ENSG00000166140	48	0	0	28	11	28.21	-	-	-	A	41101336	G	A	41101336	4	1	281	1	0	0	0	0	0	1	0	0	17761	1203	42	4	305	4	ZFYVE19	15	41101336	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1215505	41101336	61430056	870	32134										
EHD4	0	genome.wustl.edu	37	chr15	42211464	42211464	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttgcgcaccgctgccttctGggggaggctctggatgtctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	42211464	42211464	G	-	DEL	EHD4	ENST00000220325	human	ensembl	69_37n	-1	known	frame_shift_del	c.868	p.Q290fs	0.998	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	65	0	0	31	19	38	-	-	-	-	42211464	G	-	42211464	7	5	281	1	0	1	0	1	0	0	0	0	5015	1357	47	0	769	0	EHD4	15	42211464	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1110128	42211464	60319928	871	32135										
ADAL	0	genome.wustl.edu	37	chr15	43639255	43639255	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggaacctcttttagaagcTaagaaagcaggtctgaagtt	10	6	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	43639255	43639255	T	C	SNP	ADAL	ENST00000422466	human	ensembl	69_37n	1	known	silent	c.594	p.A198	1.000	pfam_A/AMP_deaminase_dom	pfam_A/AMP_deaminase_dom	-	no_errors	ADAL	HGNC	ENSG00000168803	128	0	0	75	24	24.24	-	-	-	C	43639255	T	C	43639255	2	2	281	1	0	0	0	0	0	0	0	1	233	1509	53	5		5	ADAL	15	43639255	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1427791	43639255	58892137	872	32136										
TP53BP1	0	genome.wustl.edu	37	chr15	43739559	43739559	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atatcattactttttattcaCtcaccaataggagtactgtg	5	8	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	43739559	43739559	C	T	SNP	TP53BP1	ENST00000414758	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TP53BP1	HGNC	ENSG00000067369	81	0	0	65	24	26.97	-	-	-	T	43739559	C	T	43739559	1	4	281	0	1	0	0	0	0	0	0	0	16479	580	20	4		4	TP53BP1	15	43739559	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	100304	43739559	58791833	873	32137										
MAP1A	0	genome.wustl.edu	37	chr15	43820640	43820640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccctagctccagctccaagCctgcctggagacatgggtga	12	14	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	43820640	43820640	C	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.6969	p.S2323	0.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	67	0	0	21	10	32.26	-	-	-	T	43820640	C	T	43820640	2	4	281	1	0	0	0	0	0	0	0	1	9298	738	26	4		4	MAP1A	15	43820640	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	81081	43820640	58710752	874	32138										
DUOX1	0	genome.wustl.edu	37	chr15	45457005	45457005	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatcggggtgtttagctgtgGcccccctggcatgaccaaga	14	11	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	45457005	45457005	G	C	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.4562	p.G1521A	1.000	pfam_Fe_red_NAD-bd_6	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	324	0	0	95	32	25.2	-	-	-	C	45457005	G	C	45457005	3	2	281	1	0	0	0	0	1	0	0	0	4835	1203	42	4	4692	4	DUOX1	15	45457005	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1636365	45457005	57074387	875	32139										
DUOX1	0	genome.wustl.edu	37	chr15	45457064	45457064	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctcatcaacaggcaggacCggactcacttctcccaccat	7	16	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	45457064	45457064	C	A	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	silent	c.4621	p.R1541	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	249	0	0	75	23	23.47	-	-	-	A	45457064	C	A	45457064	2	1	281	1	0	0	0	0	0	0	0	1	4835	643	23	3		3	DUOX1	15	45457064	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	59	45457064	57074328	876	32140										
SLC30A4	0	genome.wustl.edu	37	chr15	45814234	45814234	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctggctttcacctttctctGcttcagtatctctctctgtt	5	14	5	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	45814234	45814234	G	A	SNP	SLC30A4	ENST00000261867	human	ensembl	69_37n	-1	known	nonsense	c.319	p.Q107*	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154	124	0	0	54	17	23.94	-	-	-	A	45814234	G	A	45814234	4	1	281	1	0	0	0	0	0	1	0	0	14646	1328	46	4	998	4	SLC30A4	15	45814234	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	357170	45814234	56717158	877	32141										
DMXL2	0	genome.wustl.edu	37	chr15	51787275	51787275	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagcgatgtcaaaaggcatgTgtgtaggcgcatagctaaca	12	8	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	51787275	51787275	T	C	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.4729	p.T1577A	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	126	1	0.79	100	28	21.88	-	-	-	C	51787275	T	C	51787275	3	2	281	1	0	0	0	0	1	0	0	0	4631	1696	59	5	4484	5	DMXL2	15	51787275	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	5973041	51787275	50744117	878	32142										
MYO5A	0	genome.wustl.edu	37	chr15	52646161	52646161	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctctgtgacccgcttctgGagcttaaggaacaatgacat	10	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	52646161	52646161	G	A	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	silent	c.3474	p.L1158	0.974	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	149	0	0	68	29	29.9	-	-	-	A	52646161	G	A	52646161	2	1	281	1	0	0	0	0	0	0	0	1	10150	1161	41	2		2	MYO5A	15	52646161	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	858886	52646161	49885231	879	32143										
ARPP19	0	genome.wustl.edu	37	chr15	52849227	52849227	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgctatacgcacagatatcCgtttcacaatctgtcagcat	6	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	52849227	52849227	C	T	SNP	ARPP19	ENST00000565288	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARPP19	HGNC	ENSG00000128989	129	0	0	92	35	27.56	-	-	-	T	52849227	C	T	52849227	1	4	281	0	1	0	0	0	0	0	0	0	981	667	23	1		1	ARPP19	15	52849227	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	203066	52849227	49682165	880	32144										
MYO1E	0	genome.wustl.edu	37	chr15	59445902	59445902	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggcgggcgggccatggaggtGtacaggcttttctgattgga	18	7	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	59445902	59445902	G	A	SNP	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	silent	c.2967	p.Y989	0.036	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	58	0	0	44	16	26.67	-	-	-	A	59445902	G	A	59445902	2	1	281	1	0	0	0	0	0	0	0	1	10144	1372	48	4		4	MYO1E	15	59445902	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6596675	59445902	43085490	881	32145										
HERC1	0	genome.wustl.edu	37	chr15	64015488	64015488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caatttcaggccgcaatttaTaatcaaaaggcttctgttct	6	9	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	64015488	64015488	T	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3635	p.Y1212C	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	26	0	0	8	12	60	-	-	-	C	64015488	T	C	64015488	3	2	281	1	0	0	0	0	1	0	0	0	7108	1406	49	5	11190	5	HERC1	15	64015488	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	4569586	64015488	38515904	882	32146										
SPG21	0	genome.wustl.edu	37	chr15	65268875	65268875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acagaactcgagatggtcccAataaactggatactgcaact	8	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	65268875	65268875	A	G	SNP	SPG21	ENST00000204566	human	ensembl	69_37n	-1	known	missense	c.244	p.W82R	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487	74	0	0	30	31	50.82	-	-	-	G	65268875	A	G	65268875	3	3	281	1	0	0	0	0	1	0	0	0	15134	130	5	5	706	5	SPG21	15	65268875	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1253387	65268875	37262517	883	32147										
GLCE	0	genome.wustl.edu	37	chr15	69548655	69548655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagagagccccctatcacccCgatggtgtgtttatgtcttt	9	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	69548655	69548655	C	T	SNP	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	silent	c.510	p.P170	0.737	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	484	0	0	386	126	24.61	-	-	-	T	69548655	C	T	69548655	2	4	281	1	0	0	0	0	0	0	0	1	6484	639	23	1		1	GLCE	15	69548655	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4279780	69548655	32982737	884	32148										
KIF23	0	genome.wustl.edu	37	chr15	69732289	69732289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatctatgaggaagataaacGcaatttgcaacaggaacttg	9	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	69732289	69732289	G	A	SNP	KIF23	ENST00000260363	human	ensembl	69_37n	1	known	missense	c.1760	p.R587H	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807	90	0	0	78	31	28.44	-	-	-	A	69732289	G	A	69732289	3	1	281	1	0	0	0	0	1	0	0	0	8343	1087	38	1	1822	1	KIF23	15	69732289	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	183634	69732289	32799103	885	32149										
UACA	0	genome.wustl.edu	37	chr15	70960850	70960850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctccttgaggagcttattatCcaaataaactttttcaattt	4	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	70960850	70960850	C	T	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.2173	p.D725N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	280	1	0.35	208	69	24.91	-	-	-	T	70960850	C	T	70960850	3	4	281	1	0	0	0	0	1	0	0	0	16921	855	30	2	2093	2	UACA	15	70960850	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1228561	70960850	31570542	886	32150										
ISLR2	0	genome.wustl.edu	37	chr15	74425525	74425525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctgccccgggacgcactcGgtgcgctacccgacctgcgt	12	18	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	74425525	74425525	G	A	SNP	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	missense	c.430	p.G144S	0.020	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	104	0	0	32	28	46.67	-	-	-	A	74425525	G	A	74425525	3	1	281	1	0	0	0	0	1	0	0	0	7913	1116	39	1	432	1	ISLR2	15	74425525	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3464675	74425525	28105867	887	32151										
LMAN1L	0	genome.wustl.edu	37	chr15	75111609	75111609	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcagcagccaccggcaccctGgcaggtgaggatcccactgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	75111609	75111609	G	-	DEL	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	frame_shift_del	c.714	p.A239fs	0.995	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	62	0	0	20	9	29.03	-	-	-	-	75111609	G	-	75111609	7	5	281	1	0	1	0	1	0	0	0	0	8893	1335	47	0	736	0	LMAN1L	15	75111609	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	686084	75111609	27419783	888	32152										
SIN3A	0	genome.wustl.edu	37	chr15	75673981	75673983	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccacagggtcatccgaattCtcctcttctgtgtccagaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	75673981	75673983	CTC	-	DEL	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	in_frame_del	c.3261_3259	p.E1087in_frame_del	0.997:1.000:1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	121	0	0	76	12	13.48	-	-	-	-	75673983	CTC	-	75673981	7	5	281	1	0	1	0	1	0	0	0	0	14414	912	32	0	576	0	SIN3A	15	75673981	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	562372	75673981	26857411	889	32153										
PTPN9	0	genome.wustl.edu	37	chr15	75798271	75798271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggcgagatcaattttgacgTacccacccaggttttctgga	10	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	75798271	75798271	T	C	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	missense	c.713	p.Y238C	0.941	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	117	0	0	50	9	15.25	-	-	-	C	75798271	T	C	75798271	3	2	281	1	0	0	0	0	1	0	0	0	12877	1638	57	5	1096	5	PTPN9	15	75798271	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	124290	75798271	26733121	890	32154										
MRPS11	0	genome.wustl.edu	37	chr15	89015951	89015951	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcacacattaaagcatcccaCaacaagtaagtgggaaggga	10	9	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	89015951	89015951	C	T	SNP	MRPS11	ENST00000325844	human	ensembl	69_37n	1	known	silent	c.276	p.H92	1.000	pfam_Ribosomal_S11	pfam_Ribosomal_S11	-	no_errors	MRPS11	HGNC	ENSG00000181991	31	0	0	38	5	11.63	-	-	-	T	89015951	C	T	89015951	2	4	281	1	0	0	0	0	0	0	0	1	9894	477	17	4		4	MRPS11	15	89015951	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	13217680	89015951	13515441	891	32155										
DET1	0	genome.wustl.edu	37	chr15	89073859	89073859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagtgtacctcatacctgtgAtggatctgtgactcgcagtg	12	9	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	89073859	89073859	A	G	SNP	DET1	ENST00000444300	human	ensembl	69_37n	-1	known	missense	c.1111	p.S371P	0.993	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	66	0	0	51	26	33.77	-	-	-	G	89073859	A	G	89073859	3	3	281	1	0	0	0	0	1	0	0	0	4486	333	12	5	590	5	DET1	15	89073859	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	57908	89073859	13457533	892	32156										
AEN	0	genome.wustl.edu	37	chr15	89169793	89169793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctatcgactgtgagatggTgggcacgggaccccgagggc	18	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	89169793	89169793	T	C	SNP	AEN	ENST00000379231	human	ensembl	69_37n	1	known	missense	c.353	p.V118A	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026	39	0	0	10	6	35.29	-	-	-	C	89169793	T	C	89169793	3	2	281	1	0	0	0	0	1	0	0	0	351	1696	59	5	355	5	AEN	15	89169793	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	95934	89169793	13361599	893	32157										
HAPLN3	0	genome.wustl.edu	37	chr15	89424727	89424727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgtcctgccgcaggtgcacGcggccttggtagtccccaaa	12	14	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	89424727	89424727	G	A	SNP	HAPLN3	ENST00000359595	human	ensembl	69_37n	-1	known	silent	c.354	p.R118	0.551	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like	-	no_errors	HAPLN3	HGNC	ENSG00000140511	82	0	0	17	34	66.67	-	-	-	A	89424727	G	A	89424727	2	1	281	1	0	0	0	0	0	0	0	1	7007	1074	38	1		1	HAPLN3	15	89424727	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	254934	89424727	13106665	894	32158										
BLM	0	genome.wustl.edu	37	chr15	91354518	91354518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggagctcgacgaggaaataCccgtatcttcccactacttt	8	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	91354518	91354518	C	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.3958	p.P1320S	0.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	84	0	0	60	8	11.76	-	-	-	T	91354518	C	T	91354518	3	4	281	1	0	0	0	0	1	0	0	0	1450	507	18	4	4036	4	BLM	15	91354518	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1929791	91354518	11176874	895	32159										
SLCO3A1	0	genome.wustl.edu	37	chr15	92706541	92706541	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcagcatcagagccagacaGgattcagaataaggagagaa	11	8	3	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	92706541	92706541	G	A	SNP	SLCO3A1	ENST00000555439	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	52	0	0	26	5	16.13	-	-	-	A	92706541	G	A	92706541	1	1	281	0	1	0	0	0	0	0	0	0	14817	1015	35	4		4	SLCO3A1	15	92706541	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1352023	92706541	9824851	896	32160										
IGF1R	0	genome.wustl.edu	37	chr15	99452113	99452113	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acataaacaccaggaacaacGgggagagagcctcctgtgag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	15	99452113	99452113	G	-	DEL	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	frame_shift_del	c.1447	p.E484fs	1.000	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	44	0	0	21	10	31.25	-	-	-	-	99452113	G	-	99452113	7	5	281	1	0	1	0	1	0	0	0	0	7625	1116	39	0	1469	0	IGF1R	15	99452113	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	6745572	99452113	3079279	897	32161										
CCNF	0	genome.wustl.edu	37	chr16	2499889	2499889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcctatgaagacctcattcCctgcgtcttgagcctccata	6	15	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	2499889	2499889	C	T	SNP	CCNF	ENST00000397066	human	ensembl	69_37n	1	known	missense	c.1460	p.P487L	1.000	pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,pfam_F-box_dom_cyclin-like,superfamily_Cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	CCNF	HGNC	ENSG00000162063	46	0	0	33	6	15.38	-	-	-	T	2499889	C	T	2499889	3	4	281	1	0	0	0	0	1	0	0	0	2951	623	22	4	1510	4	CCNF	16	2499889	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		2499889	87854864	898	32162										
SRRM2	0	genome.wustl.edu	37	chr16	2816577	2816577	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acctcaccagtgacacgccgCcgctctaggtcccggacacc	9	19	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	2816577	2816577	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.6048	p.R2016	0.997	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	226	0	0	157	38	19.49	-	-	-	T	2816577	C	T	2816577	2	4	281	1	0	0	0	0	0	0	0	1	15260	726	26	4		4	SRRM2	16	2816577	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	316688	2816577	87538176	899	32163										
PRSS21	0	genome.wustl.edu	37	chr16	2871056	2871056	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tacagtttccgcaaggacatCtttggagacatggtttgtgc	11	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	2871056	2871056	C	A	SNP	PRSS21	ENST00000574265	human	ensembl	69_37n	1	novel	missense	c.476	p.S159Y	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRSS21	HGNC	ENSG00000007038	225	0	0	115	21	15.44	-	-	-	A	2871056	C	A	2871056	3	1	281	1	0	0	0	0	1	0	0	0	12698	903	32	2	669	2	PRSS21	16	2871056	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	54479	2871056	87483697	900	32164										
ZNF205	0	genome.wustl.edu	37	chr16	3168990	3168992	+	In_Frame_Del	DEL	AGA	AGA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagccggcaggcaggagatgAgaaggagtggagaggcgcgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	3168990	3168992	AGA	-	DEL	ZNF205	ENST00000219091	human	ensembl	69_37n	1	known	in_frame_del	c.569_571	p.K191in_frame_del	0.633:0.615:0.001	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386	10	0	0	3	3	50	-	-	-	-	3168992	AGA	-	3168990	7	5	281	1	0	1	0	1	0	0	0	0	17860	304	11	0	587	0	ZNF205	16	3168990	In_Frame_Del	DEL	AGA	TCGA-AN-A0AK-01A-21W-A019-09	297934	3168990	87185763	901	32165										
ADCY9	0	genome.wustl.edu	37	chr16	4042211	4042211	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccggatgttcttgaacctcaGcggaaggagagccgactggt	14	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	4042211	4042211	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	silent	c.2143	p.L715	0.910	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	86	0	0	53	10	15.87	-	-	-	A	4042211	G	A	4042211	2	1	281	1	0	0	0	0	0	0	0	1	301	962	34	4		4	ADCY9	16	4042211	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	873221	4042211	86312542	902	32166										
CLEC16A	0	genome.wustl.edu	37	chr16	11065021	11065021	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtacacagaagccatcaagTttttcaaccaccctgaaagc	6	12	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	11065021	11065021	T	C	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.532	p.F178L	1.000	pfam_Uncharacterised_FPL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	46	0	0	31	5	13.89	-	-	-	C	11065021	T	C	11065021	3	2	281	1	0	0	0	0	1	0	0	0	3530	1725	60	5	550	5	CLEC16A	16	11065021	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	7022810	11065021	79289732	903	32167										
CLEC16A	0	genome.wustl.edu	37	chr16	11272354	11272354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgtccctgcccggcagcccaCcatttccctgctctgcgagg	10	19	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	11272354	11272354	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.2969	p.T990I	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	57	0	0	36	9	20	-	-	-	T	11272354	C	T	11272354	3	4	281	1	0	0	0	0	1	0	0	0	3530	507	18	4	3059	4	CLEC16A	16	11272354	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	207333	11272354	79082399	904	32168										
NDE1	0	genome.wustl.edu	37	chr16	15817980	15817980	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctgattccccaacccagcGtccatggccagagtggggga	13	13	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	15817980	15817980	G	A	SNP	NDE1	ENST00000571896	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDE1	HGNC	ENSG00000072864	77	0	0	36	17	32.08	-	-	-	A	15817980	G	A	15817980	1	1	281	0	1	0	0	0	0	0	0	0	10315	1160	40	1		1	NDE1	16	15817980	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4545626	15817980	74536773	905	32169										
C16orf62	0	genome.wustl.edu	37	chr16	19710827	19710827	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcccttttctgtttcaggccCtgaagcgccagagctcgttg	10	13	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	19710827	19710827	C	A	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	missense	c.2917	p.L973M	0.997	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	63	0	0	43	12	21.82	-	-	-	A	19710827	C	A	19710827	3	1	281	1	0	0	0	0	1	0	0	0	1838	680	24	4	2768	4	C16orf62	16	19710827	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3892847	19710827	70643926	906	32170										
UMOD	0	genome.wustl.edu	37	chr16	20346823	20346823	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaagctgctaaaagccctTgagactgtggcctggacacc	10	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	20346823	20346823	T	C	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	silent	c.1941	p.S647	0.217	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	83	0	0	61	18	22.78	-	-	-	C	20346823	T	C	20346823	2	2	281	1	0	0	0	0	0	0	0	1	17076	1799	63	5		5	UMOD	16	20346823	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	635996	20346823	70007930	907	32171										
DNAH3	0	genome.wustl.edu	37	chr16	21033368	21033368	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggacaacaaatttacaatGaaggcgaccaaattccaggc	8	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	21033368	21033368	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.5701	p.H1901Y	0.013	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	37	0	0	56	12	17.39	-	-	-	A	21033368	G	A	21033368	3	1	281	1	0	0	0	0	1	0	0	0	4639	1290	45	2	6740	2	DNAH3	16	21033368	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	686545	21033368	69321385	908	32172										
RBBP6	0	genome.wustl.edu	37	chr16	24578810	24578810	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagaattctatagagagcagCgacgactaaaagaagagtat	10	5	1	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	24578810	24578810	C	T	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	nonsense	c.1936	p.R646*	0.994	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	256	0	0	154	99	38.98	-	-	-	T	24578810	C	T	24578810	4	4	281	1	0	0	0	0	0	1	0	0	13186	760	27	1	2048	1	RBBP6	16	24578810	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3545442	24578810	65775943	909	32173										
TNRC6A	0	genome.wustl.edu	37	chr16	24831653	24831653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttcgtataggtggaggatgGggaaattctgacgccagata	14	6	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	24831653	24831653	G	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.5274	p.W1758C	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	105	0	0	104	25	19.38	-	-	-	T	24831653	G	T	24831653	3	4	281	1	0	0	0	0	1	0	0	0	16435	1241	43	4	5360	4	TNRC6A	16	24831653	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	252843	24831653	65523100	910	32174										
PRSS8	0	genome.wustl.edu	37	chr16	31144006	31144007	+	Frame_Shift_Ins	INS	-	-	G													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagcgtcccacctcacctgaINSgggggccacatgaccccagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	31144006	31144007	-	G	INS	PRSS8	ENST00000317508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.535_534	p.S178fs	0.792:0.155	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS8	HGNC	ENSG00000052344	108	0	0	68	12	15	-	-	-	G	31144007	-	G	31144006	7	5	281	1	0	1	1	0	0	0	0	0	12715	304	11	0	508	0	PRSS8	16	31144006	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	6312353	31144006	59210747	911	32175										
ZNF267	0	genome.wustl.edu	37	chr16	31926605	31926605	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caacatcagatcattcctacCgaagagaaaccctgtaaatg	6	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	31926605	31926605	C	T	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	silent	c.1035	p.T345	0.914	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	249	0	0	235	63	21.07	-	-	-	T	31926605	C	T	31926605	2	4	281	1	0	0	0	0	0	0	0	1	17902	639	23	1		1	ZNF267	16	31926605	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	782599	31926605	58428148	912	32176										
VPS35	0	genome.wustl.edu	37	chr16	46696915	46696915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgggacatgaattcatatgCgactgtctcatgattttcaa	8	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	46696915	46696915	C	T	SNP	VPS35	ENST00000299138	human	ensembl	69_37n	-1	known	missense	c.1807	p.A603T	1.000	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329	83	0	0	41	37	47.44	-	-	-	T	46696915	C	T	46696915	3	4	281	1	0	0	0	0	1	0	0	0	17300	768	27	1	599	1	VPS35	16	46696915	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	14770310	46696915	43657838	913	32177										
ITFG1	0	genome.wustl.edu	37	chr16	47347684	47347684	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtagatggtactcttttggcAatttttatcttcacagcctg	8	8	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	47347684	47347684	A	G	SNP	ITFG1	ENST00000320640	human	ensembl	69_37n	-1	known	missense	c.853	p.C285R	0.988	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636	64	0	0	35	21	37.5	-	-	-	G	47347684	A	G	47347684	3	3	281	1	0	0	0	0	1	0	0	0	7923	130	5	5	1025	5	ITFG1	16	47347684	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	650769	47347684	43007069	914	32178										
ABCC12	0	genome.wustl.edu	37	chr16	48174749	48174749	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggtaaactcggtggcaaaaAgggctatgcacagtccaatg	12	8	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	48174749	48174749	A	G	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.506	p.L169P	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	228	0	0	208	53	20.31	-	-	-	G	48174749	A	G	48174749	3	3	281	1	0	0	0	0	1	0	0	0	52	72	3	5	3677	5	ABCC12	16	48174749	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	827065	48174749	42180004	915	32179										
CHD9	0	genome.wustl.edu	37	chr16	53296923	53296923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttttgtggcatctggaaacCggacagatatttctttagat	10	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	53296923	53296923	C	T	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.4234	p.R1412W	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	117	1	0.84	102	39	27.66	-	-	-	T	53296923	C	T	53296923	3	4	281	1	0	0	0	0	1	0	0	0	3361	643	23	1	4308	1	CHD9	16	53296923	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5122174	53296923	37057830	916	32180										
OGFOD1	0	genome.wustl.edu	37	chr16	56501107	56501107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctgtctgaagaaaagtcaCgtttgtctataagtggctgg	12	6	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	56501107	56501107	C	T	SNP	OGFOD1	ENST00000566157	human	ensembl	69_37n	1	known	missense	c.688	p.R230C	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263	218	0	0	210	62	22.71	-	-	-	T	56501107	C	T	56501107	3	4	281	1	0	0	0	0	1	0	0	0	10914	536	19	1	714	1	OGFOD1	16	56501107	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3204184	56501107	33853646	917	32181										
SLC38A7	0	genome.wustl.edu	37	chr16	58705111	58705111	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacgtcctcctccactggcaCcccctggtagcgcagccaca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	58705111	58705111	C	-	DEL	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	frame_shift_del	c.1069	p.V357fs	0.001	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	25	0	0	9	6	40	-	-	-	-	58705111	C	-	58705111	7	5	281	1	0	1	0	1	0	0	0	0	14698	507	18	0	331	0	SLC38A7	16	58705111	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	2204004	58705111	31649642	918	32182										
CDH16	0	genome.wustl.edu	37	chr16	66945906	66945906	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagctctcctggtccaacttGgggggtggcatcactctctc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	66945906	66945906	G	-	DEL	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	frame_shift_del	c.1686	p.K563fs	0.250	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	45	0	0	5	4	44.44	-	-	-	-	66945906	G	-	66945906	7	5	281	1	0	1	0	1	0	0	0	0	3130	1335	47	0	827	0	CDH16	16	66945906	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	8240795	66945906	23408847	919	32183										
CDH1	0	genome.wustl.edu	37	chr16	68867410	68867411	+	RNA	DEL	GA	GA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgaggacgactaggggactcGagagaggcgggccccagacc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	68867410	68867411	GA	-	DEL	CDH1	ENST00000562836	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	70	0	0	41	7	14.58	-	-	-	-	68867411	GA	-	68867410	6	5	281	0	1	1	0	1	0	0	0	0	3124	1073	37	0		0	CDH1	16	68867410	RNA	DEL	GA	TCGA-AN-A0AK-01A-21W-A019-09	1921504	68867410	21487343	920	32184										
PLCG2	0	genome.wustl.edu	37	chr16	81990425	81990425	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccaaccgggatgccctggtTaaagagttcagtgttaatga	12	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	81990425	81990425	T	C	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	silent	c.3696	p.V1232	0.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	112	0	0	48	26	35.14	-	-	-	C	81990425	T	C	81990425	2	2	281	1	0	0	0	0	0	0	0	1	12110	1741	61	5		5	PLCG2	16	81990425	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	13123015	81990425	8364328	921	32185										
HSD17B2	0	genome.wustl.edu	37	chr16	82069191	82069191	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcctgctcatcctgtccccTttttggggcttgatcctctt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	82069191	82069191	T	-	DEL	HSD17B2	ENST00000199936	human	ensembl	69_37n	1	known	frame_shift_del	c.162	p.W56fs	0.001	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696	94	0	0	51	18	24.66	-	-	-	-	82069191	T	-	82069191	7	5	281	1	0	1	0	1	0	0	0	0	7435	1596	56	0	164	0	HSD17B2	16	82069191	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	78766	82069191	8285562	922	32186										
ANKRD11	0	genome.wustl.edu	37	chr16	89351379	89351379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggcagagctcccgtgagacGaggtggaggaggcagagagg	20	8	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	89351379	89351379	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.1571	p.S524L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	41	0	0	9	4	28.57	-	-	-	A	89351379	G	A	89351379	3	1	281	1	0	0	0	0	1	0	0	0	639	1059	37	1	6440	1	ANKRD11	16	89351379	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	7282188	89351379	1003374	923	32187										
SPG7	0	genome.wustl.edu	37	chr16	89623346	89623346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaactatgaggacattgagGctctcattggcccgccgccc	10	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	16	89623346	89623346	G	A	SNP	SPG7	ENST00000268704	human	ensembl	69_37n	1	known	missense	c.2233	p.A745T	1.000	pfam_Peptidase_M41,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912	24	0	0	10	4	28.57	-	-	-	A	89623346	G	A	89623346	3	1	281	1	0	0	0	0	1	0	0	0	15135	1203	42	4	2449	4	SPG7	16	89623346	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	271967	89623346	731407	924	32188										
GEMIN4	0	genome.wustl.edu	37	chr17	650385	650385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggccagcgaggtcaggctgaCatcccgttctgcctccttca	11	15	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	650385	650385	C	T	SNP	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	missense	c.898	p.V300I	0.035	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	53	0	0	38	6	13.64	-	-	-	T	650385	C	T	650385	3	4	281	1	0	0	0	0	1	0	0	0	6382	478	17	4	2282	4	GEMIN4	17	650385	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		650385	80544825	925	32189										
SMYD4	0	genome.wustl.edu	37	chr17	1687721	1687721	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgctgacggcggattctgcaCaagatctgctgccacagcgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	1687721	1687721	C	-	DEL	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	frame_shift_del	c.1919	p.C640fs	0.840	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	93	0	0	104	24	18.32	-	-	-	-	1687721	C	-	1687721	7	5	281	1	0	1	0	1	0	0	0	0	14913	478	17	0	511	0	SMYD4	17	1687721	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1037336	1687721	79507489	926	32190										
OR3A2	0	genome.wustl.edu	37	chr17	3181584	3181584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagaaccaaaggtgtgcctgCcatgatgaaacccacagcaa	10	11	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	3181584	3181584	C	T	SNP	OR3A2	ENST00000408891	human	ensembl	69_37n	-1	known	missense	c.646	p.A216T	0.250	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR3A2	HGNC	ENSG00000221882	259	0	0	155	107	40.68	-	-	-	T	3181584	C	T	3181584	3	4	281	1	0	0	0	0	1	0	0	0	11111	739	26	4	323	4	OR3A2	17	3181584	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1493863	3181584	78013626	927	32191										
KIF1C	0	genome.wustl.edu	37	chr17	4905419	4905419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagctatcctactctgtggaGgtaagcccgggtcttggtgg	14	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	4905419	4905419	G	T	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	missense	c.429	p.E143D	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	87	0	0	40	10	20	-	-	-	T	4905419	G	T	4905419	3	4	281	1	0	0	0	0	1	0	0	0	8337	1014	35	4	443	4	KIF1C	17	4905419	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1723835	4905419	76289791	928	32192										
KIF1C	0	genome.wustl.edu	37	chr17	4908271	4908271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggaactgctgatggctcagGgactgtcagcctctgctctg	14	11	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	4908271	4908271	G	A	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	missense	c.1141	p.G381R	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	64	0	0	25	6	19.35	-	-	-	A	4908271	G	A	4908271	3	1	281	1	0	0	0	0	1	0	0	0	8337	1233	43	4	1183	4	KIF1C	17	4908271	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2852	4908271	76286939	929	32193										
DHX33	0	genome.wustl.edu	37	chr17	5354241	5354241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggtccagttgggcaatggcCgcctgaatgtgatctaaaga	13	8	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	5354241	5354241	C	T	SNP	DHX33	ENST00000572490	human	ensembl	69_37n	-1	novel	missense	c.1138	p.G380S	0.235	smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHX33	HGNC	ENSG00000005100	185	0	0	169	54	24.22	-	-	-	T	5354241	C	T	5354241	3	4	281	1	0	0	0	0	1	0	0	0	4542	639	23	1	729	1	DHX33	17	5354241	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	445970	5354241	75840969	930	32194										
ACAP1	0	genome.wustl.edu	37	chr17	7246715	7246715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagaggtctgcggggtttccGagaggctcgccgggatttct	16	10	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	7246715	7246715	G	A	SNP	ACAP1	ENST00000158762	human	ensembl	69_37n	1	known	missense	c.362	p.R121Q	1.000	pfscan_PLipase_C_PInositol-sp_X_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818	44	0	0	41	10	19.61	-	-	-	A	7246715	G	A	7246715	3	1	281	1	0	0	0	0	1	0	0	0	118	1058	37	1	384	1	ACAP1	17	7246715	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1892474	7246715	73948495	931	32195										
ALOX15B	0	genome.wustl.edu	37	chr17	7951114	7951114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacccagcatgcagctgccaCcacccacctccaaaggcctg	7	20	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	7951114	7951114	C	T	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	missense	c.1732	p.P578S	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	60	0	0	29	11	27.5	-	-	-	T	7951114	C	T	7951114	3	4	281	1	0	0	0	0	1	0	0	0	539	507	18	4	1782	4	ALOX15B	17	7951114	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	704399	7951114	73244096	932	32196										
ARHGEF15	0	genome.wustl.edu	37	chr17	8222360	8222360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggttctggactatgcccatcGctccctggtccaggcccagc	11	16	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	8222360	8222360	G	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.2069	p.R690H	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	93	0	0	61	15	19.74	-	-	-	A	8222360	G	A	8222360	3	1	281	1	0	0	0	0	1	0	0	0	900	1087	38	1	2115	1	ARHGEF15	17	8222360	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	271246	8222360	72972850	933	32197										
DNAH9	0	genome.wustl.edu	37	chr17	11790216	11790216	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggccagcagctgccagggcCtcactgctctacttcatcat	9	16	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	11790216	11790216	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.11046	p.A3682	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	121	0	0	115	31	21.23	-	-	-	A	11790216	C	A	11790216	2	1	281	1	0	0	0	0	0	0	0	1	4643	668	24	4		4	DNAH9	17	11790216	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3567856	11790216	69404994	934	32198										
MYOCD	0	genome.wustl.edu	37	chr17	12656559	12656559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcccacagcacatcagtttgCccccatcacccaacaaccct	4	20	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	12656559	12656559	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.1954	p.P652S	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	118	0	0	128	28	17.95	-	-	-	T	12656559	C	T	12656559	3	4	281	1	0	0	0	0	1	0	0	0	10159	739	26	4	1992	4	MYOCD	17	12656559	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	866343	12656559	68538651	935	32199										
HS3ST3A1	0	genome.wustl.edu	37	chr17	13399528	13399529	+	Frame_Shift_Ins	INS	-	-	A													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatggttatccatcccagccINSaaagtcgtgcccggtcatct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	13399528	13399529	-	A	INS	HS3ST3A1	ENST00000284110	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1207_1206	p.G402fs	1.000:0.023	NULL	pfam_Sulfotransferase_dom	-	no_errors	HS3ST3A1	HGNC	ENSG00000153976	221	0	0	125	69	35.57	-	-	-	A	13399529	-	A	13399528	7	5	281	1	0	1	1	0	0	0	0	0	7416	594	21	0	17	0	HS3ST3A1	17	13399528	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	742969	13399528	67795682	936	32200										
ZNF286A	0	genome.wustl.edu	37	chr17	15619694	15619694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggatcttatgccttccataCacttgaaaaaagcttgaaac	6	9	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	15619694	15619694	C	T	SNP	ZNF286A	ENST00000413242	human	ensembl	69_37n	1	known	missense	c.656	p.T219I	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC005324.8-001	Clone_based_vega_gene	ENSG00000255104	90	0	0	84	24	22.22	-	-	-	T	15619694	C	T	15619694	3	4	281	1	0	0	0	0	1	0	0	0	17919	478	17	4	674	4	ZNF286A	17	15619694	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2220166	15619694	65575516	937	32201										
NCOR1	0	genome.wustl.edu	37	chr17	15964871	15964871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atatctggattttggaggagGccctttatctttcccagcct	9	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	15964871	15964871	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5725	p.P1909S	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	372	0	0	372	89	19.22	-	-	-	A	15964871	G	A	15964871	3	1	281	1	0	0	0	0	1	0	0	0	10307	1203	42	4	1637	4	NCOR1	17	15964871	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	345177	15964871	65230339	938	32202										
NCOR1	0	genome.wustl.edu	37	chr17	15965543	15965543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tactgaaggggaaggggagcGaacatatccatgactgccag	14	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	15965543	15965543	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5263	p.R1755C	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	173	0	0	170	40	18.96	-	-	-	A	15965543	G	A	15965543	3	1	281	1	0	0	0	0	1	0	0	0	10307	1058	37	1	2103	1	NCOR1	17	15965543	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	672	15965543	65229667	939	32203										
ZNF624	0	genome.wustl.edu	37	chr17	16526110	16526110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctttccacattcattgcatTtatagggcttctctccagta	5	12	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	16526110	16526110	T	C	SNP	ZNF624	ENST00000311331	human	ensembl	69_37n	-1	known	missense	c.2090	p.K697R	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566	260	1	0.38	186	53	22.18	-	-	-	C	16526110	T	C	16526110	3	2	281	1	0	0	0	0	1	0	0	0	18144	1841	64	5	511	5	ZNF624	17	16526110	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	560567	16526110	64669100	940	32204										
TOM1L2	0	genome.wustl.edu	37	chr17	17772753	17772753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggagatgagctccacgatgCgctgctgcatggcccgacag	15	12	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	17772753	17772753	C	T	SNP	TOM1L2	ENST00000379504	human	ensembl	69_37n	-1	known	missense	c.812	p.R271H	1.000	pfam_GAT,pirsf_TOM1,pfscan_GAT	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662	59	0	0	39	15	27.78	-	-	-	T	17772753	C	T	17772753	3	4	281	1	0	0	0	0	1	0	0	0	16448	768	27	1	743	1	TOM1L2	17	17772753	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1246643	17772753	63422457	941	32205										
SHMT1	0	genome.wustl.edu	37	chr17	18238961	18238961	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggttgtacagaatctctttGccagtcttgggatccacact	9	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	18238961	18238961	G	A	SNP	SHMT1	ENST00000316694	human	ensembl	69_37n	-1	known	silent	c.843	p.G281	1.000	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT1	HGNC	ENSG00000176974	133	0	0	81	13	13.83	-	-	-	A	18238961	G	A	18238961	2	1	281	1	0	0	0	0	0	0	0	1	14374	1306	46	4		4	SHMT1	17	18238961	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	466208	18238961	62956249	942	32206										
SLC5A10	0	genome.wustl.edu	37	chr17	18922757	18922757	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggtcatagtggcactcatCggcgtgagtgtggcctggat	15	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	18922757	18922757	C	T	SNP	SLC5A10	ENST00000395647	human	ensembl	69_37n	1	known	silent	c.1311	p.I437	0.995	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025	24	0	0	7	4	36.36	-	-	-	T	18922757	C	T	18922757	2	4	281	1	0	0	0	0	0	0	0	1	14751	874	31	1		1	SLC5A10	17	18922757	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	683796	18922757	62272453	943	32207										
MAPK7	0	genome.wustl.edu	37	chr17	19284237	19284237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcatgctctctttgcatgagTatacacaggctattgacctc	7	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	19284237	19284237	T	C	SNP	MAPK7	ENST00000308406	human	ensembl	69_37n	1	known	missense	c.715	p.Y239H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484	49	0	0	28	14	33.33	-	-	-	C	19284237	T	C	19284237	3	2	281	1	0	0	0	0	1	0	0	0	9353	1638	57	5	725	5	MAPK7	17	19284237	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	361480	19284237	61910973	944	32208										
ALDOC	0	genome.wustl.edu	37	chr17	26902486	26902486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctttgcccggggctacaatcCgcagggcaatgtcagacaac	11	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	26902486	26902486	C	T	SNP	ALDOC	ENST00000226253	human	ensembl	69_37n	-1	known	missense	c.65	p.R22Q	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107	67	0	0	57	11	16.18	-	-	-	T	26902486	C	T	26902486	3	4	281	1	0	0	0	0	1	0	0	0	509	652	23	1	1061	1	ALDOC	17	26902486	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7618249	26902486	54292724	945	32209										
NUFIP2	0	genome.wustl.edu	37	chr17	27613244	27613244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgggttccaaggataaggCtccactctcactagtagtcc	9	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	27613244	27613244	C	T	SNP	NUFIP2	ENST00000225388	human	ensembl	69_37n	-1	known	missense	c.1768	p.A590T	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256	115	0	0	89	21	19.09	-	-	-	T	27613244	C	T	27613244	3	4	281	1	0	0	0	0	1	0	0	0	10822	797	28	4	331	4	NUFIP2	17	27613244	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	710758	27613244	53581966	946	32210										
ABHD15	0	genome.wustl.edu	37	chr17	27889671	27889671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaggctcccccacgacgacGgcccccaaggaaggaagctc	11	17	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	27889671	27889671	G	A	SNP	ABHD15	ENST00000307201	human	ensembl	69_37n	-1	known	missense	c.1315	p.R439C	1.000	NULL	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792	43	0	0	19	7	26.92	-	-	-	A	27889671	G	A	27889671	3	1	281	1	0	0	0	0	1	0	0	0	81	1116	39	1	95	1	ABHD15	17	27889671	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	276427	27889671	53305539	947	32211										
ATAD5	0	genome.wustl.edu	37	chr17	29192721	29192721	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttttttttttttgctttaGattctggaactgaagacatg	7	4	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	29192721	29192721	G	C	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	splice_site	c.3137-1	e11-1	1.000	-	-	-	no_errors	ATAD5	HGNC	ENSG00000176208	58	0	0	43	21	32.81	-	-	-	C	29192721	G	C	29192721	5	2	281	1	0	0	0	0	0	0	1	0	1080	956	33	2	3178	2	ATAD5	17	29192721	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1303050	29192721	52002489	948	32212										
SUZ12	0	genome.wustl.edu	37	chr17	30310055	30310055	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atggggaatatgaagtagccAtgcaggaaatggaagaatgt	14	3	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	30310055	30310055	A	C	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.955	p.M319L	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	182	0	0	129	86	39.81	-	-	-	C	30310055	A	C	30310055	3	2	281	1	0	0	0	0	1	0	0	0	15507	217	8	5	989	5	SUZ12	17	30310055	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1117334	30310055	50885155	949	32213										
CDK5R1	0	genome.wustl.edu	37	chr17	30814819	30814821	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaatcgtggccgtgtcggccAagaagaagaactccaagaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	30814819	30814821	AAG	-	DEL	CDK5R1	ENST00000313401	human	ensembl	69_37n	1	known	in_frame_del	c.181_183	p.K63in_frame_del	1.000:1.000:1.000	pfam_CDK5_activator,pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749	43	0	0	8	4	33.33	-	-	-	-	30814821	AAG	-	30814819	7	5	281	1	0	1	0	1	0	0	0	0	3172	131	5	0	183	0	CDK5R1	17	30814819	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	504764	30814819	50380391	950	32214										
MYO1D	0	genome.wustl.edu	37	chr17	31048090	31048090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaggcaaatcctgcccgacGcactctcacattttccagta	7	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	31048090	31048090	G	A	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	missense	c.1864	p.R622C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	137	0	0	108	42	28	-	-	-	A	31048090	G	A	31048090	3	1	281	1	0	0	0	0	1	0	0	0	10143	1087	38	1	1188	1	MYO1D	17	31048090	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	233271	31048090	50147120	951	32215										
TMEM132E	0	genome.wustl.edu	37	chr17	32957153	32957153	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tagtggaatgcgagtctgacAatgaagacatcatcaaggtg	12	6	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	32957153	32957153	A	G	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	1	known	missense	c.1195	p.N399D	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	48	0	0	24	8	25	-	-	-	G	32957153	A	G	32957153	3	3	281	1	0	0	0	0	1	0	0	0	16143	130	5	5	1217	5	TMEM132E	17	32957153	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1909063	32957153	48238057	952	32216										
LIG3	0	genome.wustl.edu	37	chr17	33319012	33319012	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccttaaatgcatcatcaggtTgatcaaacatgatctgaaga	7	8	4	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	33319012	33319012	T	C	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.1244	p.L415S	1.000	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	160	0	0	117	24	17.02	-	-	-	C	33319012	T	C	33319012	3	2	281	1	0	0	0	0	1	0	0	0	8837	1821	63	5	1266	5	LIG3	17	33319012	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	361859	33319012	47876198	953	32217										
SLFN11	0	genome.wustl.edu	37	chr17	33680924	33680924	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgactcctggcttctcctgCaagttcaggtccacagccca	8	15	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	33680924	33680924	C	T	SNP	SLFN11	ENST00000308377	human	ensembl	69_37n	-1	known	silent	c.1353	p.L451	0.059	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN11	HGNC	ENSG00000172716	154	0	0	110	56	33.73	-	-	-	T	33680924	C	T	33680924	2	4	281	1	0	0	0	0	0	0	0	1	14822	709	25	4		4	SLFN11	17	33680924	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	361912	33680924	47514286	954	32218										
CACNB1	0	genome.wustl.edu	37	chr17	37331623	37331623	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatccctgtcgggctgggggCgtgccgccccctgcagggtc	17	15	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	37331623	37331623	C	T	SNP	CACNB1	ENST00000394303	human	ensembl	69_37n	-1	known	silent	c.1620	p.T540	0.718	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	106	0	0	81	19	19	-	-	-	T	37331623	C	T	37331623	2	4	281	1	0	0	0	0	0	0	0	1	2577	755	27	1		1	CACNB1	17	37331623	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3650699	37331623	43863587	955	32219										
MED1	0	genome.wustl.edu	37	chr17	37566765	37566765	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaacaaggtggtaatgggaCcccccggaaaggtgttggtt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	37566765	37566765	C	-	DEL	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	frame_shift_del	c.1709	p.G570fs	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	113	0	0	98	25	20.33	-	-	-	-	37566765	C	-	37566765	7	5	281	1	0	1	0	1	0	0	0	0	9496	507	18	0	3040	0	MED1	17	37566765	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	235142	37566765	43628445	956	32220										
CDK12	0	genome.wustl.edu	37	chr17	37618446	37618446	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgtcaccgcttggtatcgaAgcacaagcggcataagtcca	11	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	37618446	37618446	A	C	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.122	p.K41T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	50	0	0	49	13	20.97	-	-	-	C	37618446	A	C	37618446	3	2	281	1	0	0	0	0	1	0	0	0	3157	72	3	5	124	5	CDK12	17	37618446	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	51681	37618446	43576764	957	32221										
TOP2A	0	genome.wustl.edu	37	chr17	38557207	38557207	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacccagtaccgattccttcAgcaccatttatcagcaccat	4	16	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	38557207	38557207	A	G	SNP	TOP2A	ENST00000423485	human	ensembl	69_37n	-1	known	silent	c.2559	p.A853	0.513	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_cen,smart_Topo_IIA_A/C	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2A	HGNC	ENSG00000131747	255	0	0	258	65	20.12	-	-	-	G	38557207	A	G	38557207	2	3	281	1	0	0	0	0	0	0	0	1	16461	175	7	5		5	TOP2A	17	38557207	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	938761	38557207	42638003	958	32222										
CCR7	0	genome.wustl.edu	37	chr17	38721655	38721655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaagaggctcactcacccaGgtccatgacgctctctgggc	11	14	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	38721655	38721655	G	T	SNP	CCR7	ENST00000246657	human	ensembl	69_37n	-1	known	missense	c.7	p.L3M	0.992	prints_Chemokine_CCR7	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Chemokine_CCR7,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCR11,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR7	HGNC	ENSG00000126353	129	0	0	77	42	35.29	-	-	-	T	38721655	G	T	38721655	3	4	281	1	0	0	0	0	1	0	0	0	2975	991	35	4	1141	4	CCR7	17	38721655	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	164448	38721655	42473555	959	32223										
KRT27	0	genome.wustl.edu	37	chr17	38935967	38935967	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttaccttttcgttgaaccaGgcctccgcgtccctgcggtt	9	14	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	38935967	38935967	G	A	SNP	KRT27	ENST00000301656	human	ensembl	69_37n	-1	known	silent	c.831	p.A277	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	58	0	0	34	5	12.82	-	-	-	A	38935967	G	A	38935967	2	1	281	1	0	0	0	0	0	0	0	1	8517	987	35	4		4	KRT27	17	38935967	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	214312	38935967	42259243	960	32224										
KRT20	0	genome.wustl.edu	37	chr17	39041193	39041193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcaccttttctaggtagctcGctagacggtcatttaggttc	10	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	39041193	39041193	G	A	SNP	KRT20	ENST00000167588	human	ensembl	69_37n	-1	known	missense	c.245	p.A82V	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT20	HGNC	ENSG00000171431	92	0	0	99	14	12.39	-	-	-	A	39041193	G	A	39041193	3	1	281	1	0	0	0	0	1	0	0	0	8511	1087	38	1	1061	1	KRT20	17	39041193	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	105226	39041193	42154017	961	32225										
KCNH4	0	genome.wustl.edu	37	chr17	40321597	40321597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggtgcacacggatgaagtcCttgaggtccttcatgcggct	13	11	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	40321597	40321597	C	T	SNP	KCNH4	ENST00000264661	human	ensembl	69_37n	-1	known	silent	c.1488	p.K496	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558	33	0	0	16	7	30.43	-	-	-	T	40321597	C	T	40321597	2	4	281	1	0	0	0	0	0	0	0	1	8088	680	24	4		4	KCNH4	17	40321597	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1280404	40321597	40873613	962	32226										
STAT5B	0	genome.wustl.edu	37	chr17	40369266	40369266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttctgtcaccgactctgccCcacgacggtctgacctctta	7	17	5	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	40369266	40369266	C	T	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.1292	p.G431E	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	109	1	0.91	70	8	10.26	-	-	-	T	40369266	C	T	40369266	3	4	281	1	0	0	0	0	1	0	0	0	15360	623	22	4	1107	4	STAT5B	17	40369266	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	47669	40369266	40825944	963	32227										
STAT5A	0	genome.wustl.edu	37	chr17	40458298	40458298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcctgacaaagtgctgtggCcgcagctgtgtgaggcgctc	15	11	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	40458298	40458298	C	T	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	missense	c.1513	p.P505S	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	59	0	0	40	19	32.2	-	-	-	T	40458298	C	T	40458298	3	4	281	1	0	0	0	0	1	0	0	0	15359	739	26	4	1559	4	STAT5A	17	40458298	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	89032	40458298	40736912	964	32228										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40660601	40660601	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttttcaagccttccgaggaCgaagtggtaagatgaaagct	12	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	40660601	40660601	C	T	SNP	ATP6V0A1	ENST00000343619	human	ensembl	69_37n	1	known	silent	c.2124	p.D708	0.630	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	71	0	0	62	8	11.43	-	-	-	T	40660601	C	T	40660601	2	4	281	1	0	0	0	0	0	0	0	1	1172	535	19	1		1	ATP6V0A1	17	40660601	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	202303	40660601	40534609	965	32229										
WNK4	0	genome.wustl.edu	37	chr17	40947959	40947961	+	In_Frame_Del	DEL	CTC	CTC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agcccagtgtggatgaactaCtcctacagcagcctgtgttt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	40947959	40947961	CTC	-	DEL	WNK4	ENST00000246914	human	ensembl	69_37n	1	known	in_frame_del	c.3339_3341	p.S1114in_frame_del	1.000:0.999:0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK4	HGNC	ENSG00000126562	46	0	0	38	5	11.63	-	-	-	-	40947961	CTC	-	40947959	7	5	281	1	0	1	0	1	0	0	0	0	17477	576	20	0	3401	0	WNK4	17	40947959	In_Frame_Del	DEL	CTC	TCGA-AN-A0AK-01A-21W-A019-09	287358	40947959	40247251	966	32230										
DHX8	0	genome.wustl.edu	37	chr17	41601127	41601129	+	In_Frame_Del	DEL	AGA	AGA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaactaagctaagcaaacAgaagaagcaacagcgtcttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	41601127	41601129	AGA	-	DEL	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	in_frame_del	c.3575_3577	p.K1194in_frame_del	1.000:1.000:1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	134	0	0	76	30	28.04	-	-	-	-	41601129	AGA	-	41601127	7	5	281	1	0	1	0	1	0	0	0	0	4551	188	7	0	3665	0	DHX8	17	41601127	In_Frame_Del	DEL	AGA	TCGA-AN-A0AK-01A-21W-A019-09	653168	41601127	39594083	967	32231										
SLC4A1	0	genome.wustl.edu	37	chr17	42327840	42327840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgcccctcacacaggcatggCcacttcgtcgtattcatccc	7	18	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	42327840	42327840	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.2722	p.A908T	0.130	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	51	0	0	13	13	50	-	-	-	T	42327840	C	T	42327840	3	4	281	1	0	0	0	0	1	0	0	0	14739	739	26	4	17	4	SLC4A1	17	42327840	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	726713	42327840	38867370	968	32232										
NFE2L1	0	genome.wustl.edu	37	chr17	46136805	46136805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtggagttcctgcgctccctGcgacagatgaagcagaaggt	14	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	46136805	46136805	G	A	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	silent	c.2121	p.L707	1.000	pfam_bZIP_1,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	89	0	0	40	25	38.46	-	-	-	A	46136805	G	A	46136805	2	1	281	1	0	0	0	0	0	0	0	1	10439	1306	46	4		4	NFE2L1	17	46136805	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3808965	46136805	35058405	969	32233										
XYLT2	0	genome.wustl.edu	37	chr17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccacctgtatggcagctaCccccccggcacgccagccct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT_met	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	97	0	0	40	9	18	-	-	-	-	48433967	C	-	48433967	7	5	281	1	0	1	0	1	0	0	0	0	17561	518	18	0	1608	0	XYLT2	17	48433967	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	2297162	48433967	32761243	970	32234										
TMEM100	0	genome.wustl.edu	37	chr17	53798167	53798167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatgacagaacaaccaggcCaaagatggagataatagacc	10	8	0	6			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	53798167	53798167	C	T	SNP	TMEM100	ENST00000424486	human	ensembl	69_37n	-1	known	missense	c.265	p.G89S	1.000	NULL	NULL	-	no_errors	TMEM100	HGNC	ENSG00000166292	301	0	0	257	59	18.61	-	-	-	T	53798167	C	T	53798167	3	4	281	1	0	0	0	0	1	0	0	0	16110	594	21	4	143	4	TMEM100	17	53798167	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	5364200	53798167	27397043	971	32235										
PCTP	0	genome.wustl.edu	37	chr17	53851231	53851231	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagcagagcctggcgatcgaGagtgacggcaagaaggggag	18	7	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	53851231	53851231	G	T	SNP	PCTP	ENST00000268896	human	ensembl	69_37n	1	known	missense	c.486	p.E162D	0.978	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	PCTP	HGNC	ENSG00000141179	34	0	0	23	6	20.69	-	-	-	T	53851231	G	T	53851231	3	4	281	1	0	0	0	0	1	0	0	0	11680	933	33	2	500	2	PCTP	17	53851231	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	53064	53851231	27343979	972	32236										
COIL	0	genome.wustl.edu	37	chr17	55027622	55027622	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggggtgctcgatgacatcaaGcattggtcgtctgactctgc	13	10	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	55027622	55027622	G	A	SNP	COIL	ENST00000240316	human	ensembl	69_37n	-1	known	silent	c.981	p.C327	0.000	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058	139	0	0	151	40	20.94	-	-	-	A	55027622	G	A	55027622	2	1	281	1	0	0	0	0	0	0	0	1	3695	963	34	4		4	COIL	17	55027622	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1176391	55027622	26167588	973	32237										
RNF43	0	genome.wustl.edu	37	chr17	56448375	56448375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtcgtcatcactggcattgCacaggtacagcgggtgggac	14	10	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	56448375	56448375	C	T	SNP	RNF43	ENST00000407977	human	ensembl	69_37n	-1	known	missense	c.272	p.C91Y	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	60	0	0	56	17	23.29	-	-	-	T	56448375	C	T	56448375	3	4	281	1	0	0	0	0	1	0	0	0	13581	710	25	4	2111	4	RNF43	17	56448375	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1420753	56448375	24746835	974	32238										
APPBP2	0	genome.wustl.edu	37	chr17	58539146	58539146	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtcaatacaggttgaaagAaaaaaagggtaaccattaac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	58539146	58539146	A	-	DEL	APPBP2	ENST00000592995	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	APPBP2	HGNC	ENSG00000062725	93	0	0	91	53	35.57	-	-	-	-	58539146	A	-	58539146	6	5	281	0	1	1	0	1	0	0	0	0	818	261	9	0		0	APPBP2	17	58539146	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2090771	58539146	22656064	975	32239										
BRIP1	0	genome.wustl.edu	37	chr17	59926562	59926562	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcattttcatctctgtatatGgatgcctgtttcttagcaga	7	8	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	59926562	59926562	G	T	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	silent	c.435	p.S145	0.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	240	0	0	230	31	11.88	-	-	-	T	59926562	G	T	59926562	2	4	281	1	0	0	0	0	0	0	0	1	1522	1335	47	4		4	BRIP1	17	59926562	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1387416	59926562	21268648	976	32240										
TANC2	0	genome.wustl.edu	37	chr17	61432175	61432175	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgctgcctttccataggaTttttttggatcgactagaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	61432175	61432175	T	-	DEL	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	frame_shift_del	c.1784	p.L597fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	402	1	0.25	331	169	33.4	-	-	-	-	61432175	T	-	61432175	7	5	281	1	0	1	0	1	0	0	0	0	15637	1493	52	0	1830	0	TANC2	17	61432175	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1505613	61432175	19763035	977	32241										
DDX42	0	genome.wustl.edu	37	chr17	61890689	61890689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttggccgcacaggaagagcgGgtgagaaaggtgtggcctat	17	7	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	61890689	61890689	G	A	SNP	DDX42	ENST00000389924	human	ensembl	69_37n	1	known	missense	c.1777	p.G593S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231	174	0	0	89	58	39.46	-	-	-	A	61890689	G	A	61890689	3	1	281	1	0	0	0	0	1	0	0	0	4393	1232	43	4	1831	4	DDX42	17	61890689	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	458514	61890689	19304521	978	32242										
ERN1	0	genome.wustl.edu	37	chr17	62125279	62125279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtgtttgagcacatgcttcGctgaggggcgtttctgagga	16	7	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	62125279	62125279	G	A	SNP	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	missense	c.2468	p.A823V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	81	0	0	63	19	22.89	-	-	-	A	62125279	G	A	62125279	3	1	281	1	0	0	0	0	1	0	0	0	5274	1087	38	1	481	1	ERN1	17	62125279	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	234590	62125279	19069931	979	32243										
AXIN2	0	genome.wustl.edu	37	chr17	63554687	63554687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gggccgcggggcatcctcacGgaagctgctgctggggtccg	18	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	63554687	63554687	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	missense	c.52	p.R18C	1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	46	0	0	16	9	36	-	-	-	A	63554687	G	A	63554687	3	1	281	1	0	0	0	0	1	0	0	0	1241	1116	39	1	2519	1	AXIN2	17	63554687	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1429408	63554687	17640523	980	32244										
HELZ	0	genome.wustl.edu	37	chr17	65184497	65184497	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctggttccaatccaaagtcgAaaactatggtttggcgaaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	65184497	65184497	A	-	DEL	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	frame_shift_del	c.1100	p.F367fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	275	0	0	277	67	19.31	-	-	-	-	65184497	A	-	65184497	7	5	281	1	0	1	0	1	0	0	0	0	7100	246	9	0	4816	0	HELZ	17	65184497	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	1629810	65184497	16010713	981	32245										
ABCA8	0	genome.wustl.edu	37	chr17	66938107	66938107	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gactctcttttcattctccaTtttttaagaaagttcttgca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	66938107	66938107	T	-	DEL	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	frame_shift_del	c.69	p.K23fs	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	160	0	0	170	34	16.43	-	-	-	-	66938107	T	-	66938107	7	5	281	1	0	1	0	1	0	0	0	0	38	1490	52	0	4824	0	ABCA8	17	66938107	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	1753610	66938107	14257103	982	32246										
ABCA6	0	genome.wustl.edu	37	chr17	67102267	67102267	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggcccatgtcactcacagcTgtctgcatttcagagaagga	10	11	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	67102267	67102267	T	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.2475	p.T825	0.002	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	163	0	0	110	72	39.56	-	-	-	C	67102267	T	C	67102267	2	2	281	1	0	0	0	0	0	0	0	1	36	1567	55	5		5	ABCA6	17	67102267	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	164160	67102267	14092943	983	32247										
KCNJ16	0	genome.wustl.edu	37	chr17	68129141	68129141	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctatgttccccgagaaattCtctggggccataggtttaat	9	10	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	68129141	68129141	C	A	SNP	KCNJ16	ENST00000283936	human	ensembl	69_37n	1	known	missense	c.913	p.L305I	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ16	HGNC	ENSG00000153822	357	0	0	306	82	21.13	-	-	-	A	68129141	C	A	68129141	3	1	281	1	0	0	0	0	1	0	0	0	8104	913	32	2	915	2	KCNJ16	17	68129141	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1026874	68129141	13066069	984	32248										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74622472	74622472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggaagtgcaagtagcggacGtcctgaggaccaaggacagg	16	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	74622472	74622472	G	A	SNP	ST6GALNAC1	ENST00000585633	human	ensembl	69_37n	-1	known	missense	c.2	p.T1M	0.120	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ST6GALNAC1	HGNC	ENSG00000070526	168	0	0	96	17	15.04	-	-	-	A	74622472	G	A	74622472	3	1	281	1	0	0	0	0	1	0	0	0	15314	1136	40	1	504	1	ST6GALNAC1	17	74622472	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6493331	74622472	6572738	985	32249										
DNAH17	0	genome.wustl.edu	37	chr17	76567673	76567673	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggagagaggaggccgtaccTgttcatggatgcacttgagg	16	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	76567673	76567673	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.731	p.Q244R	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	31	0	0	20	7	25.93	-	-	-	C	76567673	T	C	76567673	3	2	281	1	0	0	0	0	1	0	0	0	4637	1594	55	5	12969	5	DNAH17	17	76567673	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1945201	76567673	4627537	986	32250										
CBX2	0	genome.wustl.edu	37	chr17	77758811	77758811	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgaaggagtctcccaccagCgtgggcttcttcaacctgag	12	12	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	77758811	77758811	C	T	SNP	CBX2	ENST00000310942	human	ensembl	69_37n	1	known	silent	c.1569	p.S523	0.677	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	34	0	0	7	6	46.15	-	-	-	T	77758811	C	T	77758811	2	4	281	1	0	0	0	0	0	0	0	1	2743	767	27	1		1	CBX2	17	77758811	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1191138	77758811	3436399	987	32251										
RPTOR	0	genome.wustl.edu	37	chr17	78867510	78867510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgttgcgtctcgggcagctgGtggcgcggtggcgttctccc	17	13	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	17	78867510	78867510	G	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.2246	p.G749V	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	101	0	0	28	25	47.17	-	-	-	T	78867510	G	T	78867510	3	4	281	1	0	0	0	0	1	0	0	0	13751	1261	44	4	2324	4	RPTOR	17	78867510	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1108699	78867510	2327700	988	32252										
ENOSF1	0	genome.wustl.edu	37	chr18	677834	677834	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggaggaactgcagggccttCgcctgtaggagttgcttaaa	14	8	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	677834	677834	C	T	SNP	ENOSF1	ENST00000340116	human	ensembl	69_37n	-1	known	silent	c.978	p.A326	0.000	NULL	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199	296	0	0	225	77	25.5	-	-	-	T	677834	C	T	677834	2	4	281	1	0	0	0	0	0	0	0	1	5162	871	31	1		1	ENOSF1	18	677834	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		677834	77399414	989	32253										
MYL12B	0	genome.wustl.edu	37	chr18	3273072	3273072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatttgcatgatatgcttgCttctctaggtagactttata	8	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	3273072	3273072	C	T	SNP	MYL12B	ENST00000237500	human	ensembl	69_37n	1	known	missense	c.176	p.A59V	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL12B	HGNC	ENSG00000118680	446	0	0	227	138	37.7	-	-	-	T	3273072	C	T	3273072	3	4	281	1	0	0	0	0	1	0	0	0	10118	797	28	4	178	4	MYL12B	18	3273072	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2595238	3273072	74804176	990	32254										
EPB41L3	0	genome.wustl.edu	37	chr18	5478365	5478365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agatgatttctgagaaagttTatcgtcttctaattgctgat	8	5	3	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	5478365	5478365	T	C	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.256	p.K86E	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	115	0	0	59	42	41.18	-	-	-	C	5478365	T	C	5478365	3	2	281	1	0	0	0	0	1	0	0	0	5191	1763	61	5	3087	5	EPB41L3	18	5478365	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	2205293	5478365	72598883	991	32255										
TXNDC2	0	genome.wustl.edu	37	chr18	9888090	9888090	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaaaaggtggatgaactttgCggcgcccttaaggaaaaact	12	7	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	9888090	9888090	C	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	1	known	silent	c.1614	p.C538	0.868	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	88	0	0	62	15	19.48	-	-	-	T	9888090	C	T	9888090	2	4	281	1	0	0	0	0	0	0	0	1	16894	776	27	1		1	TXNDC2	18	9888090	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4409725	9888090	68189158	992	32256										
ROCK1	0	genome.wustl.edu	37	chr18	18625334	18625334	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcgtgcccatttttcaggcAcatcatagttgctcattaag	7	10	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	18625334	18625334	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.509	p.V170A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	61	0	0	37	5	11.9	-	-	-	G	18625334	A	G	18625334	3	3	281	1	0	0	0	0	1	0	0	0	13603	159	6	5	3671	5	ROCK1	18	18625334	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	8737244	18625334	59451914	993	32257										
SS18	0	genome.wustl.edu	37	chr18	23637702	23637702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccataggcatattctgtgtgGgtggctgaaagaagacagtt	13	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	23637702	23637702	G	T	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	missense	c.236	p.P79H	1.000	NULL	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	55	0	0	69	16	18.82	-	-	-	T	23637702	G	T	23637702	3	4	281	1	0	0	0	0	1	0	0	0	15266	1232	43	4	1052	4	SS18	18	23637702	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	5012368	23637702	54439546	994	32258										
KLHL14	0	genome.wustl.edu	37	chr18	30321985	30321985	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaggcagccctccaaccaaTaacagcattttcttgttaga	8	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	30321985	30321985	T	C	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	silent	c.975	p.L325	0.998	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	101	0	0	98	19	16.24	-	-	-	C	30321985	T	C	30321985	2	2	281	1	0	0	0	0	0	0	0	1	8423	1403	49	5		5	KLHL14	18	30321985	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	6684283	30321985	47755263	995	32259										
PIAS2	0	genome.wustl.edu	37	chr18	44407973	44407973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taaagatgcatttccttttgGcaggagggtcttcctcttcg	10	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	44407973	44407973	G	A	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.1457	p.A486V	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	177	0	0	111	51	31.48	-	-	-	A	44407973	G	A	44407973	3	1	281	1	0	0	0	0	1	0	0	0	11950	1203	42	4	499	4	PIAS2	18	44407973	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	14085988	44407973	33669275	996	32260										
ELAC1	0	genome.wustl.edu	37	chr18	48510608	48510608	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatggccctgtagggcttcgGgactttatctggcgaaccat	12	10	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	48510608	48510608	G	A	SNP	ELAC1	ENST00000269466	human	ensembl	69_37n	1	known	silent	c.300	p.R100	0.997	tigrfam_RNase_Z	pfam_Beta-lactamas-like,tigrfam_RNase_Z	-	no_errors	ELAC1	HGNC	ENSG00000141642	95	0	0	81	13	13.83	-	-	-	A	48510608	G	A	48510608	2	1	281	1	0	0	0	0	0	0	0	1	5083	1219	43	4		4	ELAC1	18	48510608	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4102635	48510608	29566640	997	32261										
DCC	0	genome.wustl.edu	37	chr18	50432613	50432613	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagatcagccgactccaaccGggggacattggaatttaccg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	50432613	50432613	G	-	DEL	DCC	ENST00000442544	human	ensembl	69_37n	1	known	frame_shift_del	c.612	p.D206fs	0.913	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	100	0	0	89	11	10.78	-	-	-	-	50432613	G	-	50432613	7	5	281	1	0	1	0	1	0	0	0	0	4313	1103	39	0	622	0	DCC	18	50432613	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1922005	50432613	27644635	998	32262										
TCF4	0	genome.wustl.edu	37	chr18	52895520	52895520	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgggccggccaaggagagaGggggaggctctgaggacacc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	52895520	52895520	G	-	DEL	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	frame_shift_del	c.2258	p.P753fs	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	80	0	0	52	40	43.48	-	-	-	-	52895520	G	-	52895520	7	5	281	1	0	1	0	1	0	0	0	0	15790	1000	35	0	67	0	TCF4	18	52895520	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	2462907	52895520	25181728	999	32263										
WDR7	0	genome.wustl.edu	37	chr18	54354207	54354207	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgttccaaatattggagggTaagataattatataaataag	9	2	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	54354207	54354207	T	C	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	splice_site	c.717+2	e6+2	1.000	-	-	-	no_errors	WDR7	HGNC	ENSG00000091157	42	0	0	34	23	39.66	-	-	-	C	54354207	T	C	54354207	5	2	281	1	0	0	0	0	0	0	1	0	17417	1652	57	5	741	5	WDR7	18	54354207	Splice_Site	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1458687	54354207	23723041	1000	32264										
ST8SIA3	0	genome.wustl.edu	37	chr18	55024628	55024628	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaccaggacattagttgacTtttttgttgaacacagaggt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	55024628	55024628	T	-	DEL	ST8SIA3	ENST00000324000	human	ensembl	69_37n	1	known	frame_shift_del	c.787	p.F264fs	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511	127	0	0	66	11	14.29	-	-	-	-	55024628	T	-	55024628	7	5	281	1	0	1	0	1	0	0	0	0	15324	1609	56	0	797	0	ST8SIA3	18	55024628	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	670421	55024628	23052620	1001	32265										
RAX	0	genome.wustl.edu	37	chr18	56939731	56939731	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgtgcggttccgccgatgCtttttcttgggctgttcctc	12	12	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	56939731	56939731	C	T	SNP	RAX	ENST00000334889	human	ensembl	69_37n	-1	known	silent	c.405	p.K135	0.998	superfamily_Homeodomain-like,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	RAX	HGNC	ENSG00000134438	55	0	0	12	4	25	-	-	-	T	56939731	C	T	56939731	2	4	281	1	0	0	0	0	0	0	0	1	13179	796	28	4		4	RAX	18	56939731	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1915103	56939731	21137517	1002	32266										
SERPINB12	0	genome.wustl.edu	37	chr18	61228376	61228376	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gattgaaagtgttgatttccAaaaaaaccctgaaaaatcca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	61228376	61228376	A	-	DEL	SERPINB12	ENST00000269491	human	ensembl	69_37n	1	known	frame_shift_del	c.443	p.N150fs	0.009	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634	130	0	0	72	33	30.56	-	-	-	-	61228376	A	-	61228376	7	5	281	1	0	1	0	1	0	0	0	0	14187	130	5	0	457	0	SERPINB12	18	61228376	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	4288645	61228376	16848872	1003	32267										
CCDC102B	0	genome.wustl.edu	37	chr18	66504553	66504553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacaaatgcatgagtctatcAgagagtatttggtaaaaaga	9	5	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	66504553	66504553	A	G	SNP	CCDC102B	ENST00000319445	human	ensembl	69_37n	1	known	missense	c.553	p.R185G	0.001	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636	205	0	0	165	27	13.99	-	-	-	G	66504553	A	G	66504553	3	3	281	1	0	0	0	0	1	0	0	0	2762	180	7	5	555	5	CCDC102B	18	66504553	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	5276177	66504553	11572695	1004	32268										
TSHZ1	0	genome.wustl.edu	37	chr18	72999170	72999170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagagcgtgcaggtgcagcCgtcctatgctggcggcgtga	17	11	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	72999170	72999170	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.1808	p.P603L	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	37	0	0	33	6	15.38	-	-	-	T	72999170	C	T	72999170	3	4	281	1	0	0	0	0	1	0	0	0	16719	652	23	1	1675	1	TSHZ1	18	72999170	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6494617	72999170	5078078	1005	32269										
ATP9B	0	genome.wustl.edu	37	chr18	77066988	77066988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgtttcatattctaaagatGcagtctcaagctggtggaaa	9	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	18	77066988	77066988	G	A	SNP	ATP9B	ENST00000426216	human	ensembl	69_37n	1	known	missense	c.1527	p.M509I	0.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9B	HGNC	ENSG00000166377	67	0	0	67	9	11.84	-	-	-	A	77066988	G	A	77066988	3	1	281	1	0	0	0	0	1	0	0	0	1203	1319	46	4	1585	4	ATP9B	18	77066988	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4067818	77066988	1010260	1006	32270										
PLIN4	0	genome.wustl.edu	37	chr19	4510761	4510761	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccaccattgtctgtggtccTggaactggtgagtccacccc	10	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	4510761	4510761	T	C	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.3169	p.R1057G	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	24	0	0	8	3	27.27	-	-	-	C	4510761	T	C	4510761	3	2	281	1	0	0	0	0	1	0	0	0	12166	1579	55	5	920	5	PLIN4	19	4510761	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09		4510761	54618222	1007	32271										
LRG1	0	genome.wustl.edu	37	chr19	4538288	4538288	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggaagaggtagcgcaggtcCggctgcggcaagaggagatc	18	8	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	4538288	4538288	C	T	SNP	LRG1	ENST00000306390	human	ensembl	69_37n	-1	known	silent	c.708	p.P236	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	144	1	0.68	27	30	52.63	-	-	-	T	4538288	C	T	4538288	2	4	281	1	0	0	0	0	0	0	0	1	9008	639	23	1		1	LRG1	19	4538288	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	27527	4538288	54590695	1008	32272										
SAFB	0	genome.wustl.edu	37	chr19	5657321	5657321	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcgtgtcctttgataaggtcAaggagcctcggaagtcaaga	12	8	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	5657321	5657321	A	G	SNP	SAFB	ENST00000588852	human	ensembl	69_37n	1	known	missense	c.1825	p.K609E	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	32	0	0	10	6	37.5	-	-	-	G	5657321	A	G	5657321	3	3	281	1	0	0	0	0	1	0	0	0	13892	131	5	5	1879	5	SAFB	19	5657321	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	1119033	5657321	53471662	1009	32273										
ZNF557	0	genome.wustl.edu	37	chr19	7075749	7075749	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgagctcctgaaaagctggCtaaaggtgagtcggatgttc	13	7	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	7075749	7075749	C	T	SNP	ZNF557	ENST00000252840	human	ensembl	69_37n	1	known	silent	c.115	p.L39	0.368	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF557	HGNC	ENSG00000130544	103	0	0	93	29	23.77	-	-	-	T	7075749	C	T	7075749	2	4	281	1	0	0	0	0	0	0	0	1	18084	796	28	4		4	ZNF557	19	7075749	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1418428	7075749	52053234	1010	32274										
INSR	0	genome.wustl.edu	37	chr19	7141785	7141785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtggacgacgttgttctcaAagatttcatgcgtcacaggg	12	8	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	7141785	7141785	A	G	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.2585	p.F862S	0.364	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	57	0	0	45	12	21.05	-	-	-	G	7141785	A	G	7141785	3	3	281	1	0	0	0	0	1	0	0	0	7827	14	1	5	1603	5	INSR	19	7141785	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	66036	7141785	51987198	1011	32275										
STXBP2	0	genome.wustl.edu	37	chr19	7709526	7709526	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccatgggctccgacgcagaGggggagaagatcaaggactc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	7709526	7709526	G	-	DEL	STXBP2	ENST00000441779	human	ensembl	69_37n	1	known	frame_shift_del	c.1167	p.E391fs	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	37	0	0	17	7	28	-	-	-	-	7709526	G	-	7709526	7	5	281	1	0	1	0	1	0	0	0	0	15444	991	35	0	1188	0	STXBP2	19	7709526	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	567741	7709526	51419457	1012	32276										
MUC16	0	genome.wustl.edu	37	chr19	9071381	9071381	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggagaggaggggatgctctgTggtgatgtggaggaaacagg	21	3	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	9071381	9071381	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.16065	p.P5355	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	561	1	0.18	387	109	21.93	-	-	-	C	9071381	T	C	9071381	2	2	281	1	0	0	0	0	0	0	0	1	10045	1683	59	5		5	MUC16	19	9071381	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1361855	9071381	50057602	1013	32277										
COL5A3	0	genome.wustl.edu	37	chr19	10071553	10071553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcactggggacccgtcggcgTccacgtaggagaactggtga	15	11	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	10071553	10071553	T	C	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.4865	p.D1622G	0.982	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	116	0	0	73	19	20.65	-	-	-	C	10071553	T	C	10071553	3	2	281	1	0	0	0	0	1	0	0	0	3728	1667	58	5	380	5	COL5A3	19	10071553	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1000172	10071553	49057430	1014	32278										
COL5A3	0	genome.wustl.edu	37	chr19	10102688	10102688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagggcacataccacattgcCtttggcaccaggagcaccat	9	14	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	10102688	10102688	C	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.1885	p.G629C	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	190	0	0	133	23	14.74	-	-	-	A	10102688	C	A	10102688	3	1	281	1	0	0	0	0	1	0	0	0	3728	681	24	4	3536	4	COL5A3	19	10102688	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	31135	10102688	49026295	1015	32279										
COL5A3	0	genome.wustl.edu	37	chr19	10103507	10103507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agccagtgacactcaccgggCgacccgtggggccaggagag	16	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	10103507	10103507	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.1844	p.R615H	0.986	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	85	0	0	62	15	19.48	-	-	-	T	10103507	C	T	10103507	3	4	281	1	0	0	0	0	1	0	0	0	3728	768	27	1	3581	1	COL5A3	19	10103507	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	819	10103507	49025476	1016	32280										
CARM1	0	genome.wustl.edu	37	chr19	11022909	11022909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gatcctgtcgttttttgccgCccaagctggagcacggaaaa	11	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	11022909	11022909	C	T	SNP	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	missense	c.608	p.A203V	1.000	pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	65	0	0	22	11	33.33	-	-	-	T	11022909	C	T	11022909	3	4	281	1	0	0	0	0	1	0	0	0	2680	739	26	4	626	4	CARM1	19	11022909	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	919402	11022909	48106074	1017	32281										
KANK2	0	genome.wustl.edu	37	chr19	11280554	11280554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggccggattgagactcaccGagcacttgatgttcatgcgg	13	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	11280554	11280554	G	A	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.2525	p.S842L	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	38	0	0	22	6	21.43	-	-	-	A	11280554	G	A	11280554	3	1	281	1	0	0	0	0	1	0	0	0	8031	1072	37	1	62	1	KANK2	19	11280554	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	257645	11280554	47848429	1018	32282										
ZNF442	0	genome.wustl.edu	37	chr19	12460577	12460577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaactgagagaactcagtgCcttcccacattccttacatt	7	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	12460577	12460577	C	T	SNP	ZNF442	ENST00000242804	human	ensembl	69_37n	-1	known	missense	c.1822	p.A608T	0.018	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342	244	0	0	146	54	26.87	-	-	-	T	12460577	C	T	12460577	3	4	281	1	0	0	0	0	1	0	0	0	18011	739	26	4	65	4	ZNF442	19	12460577	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1180023	12460577	46668406	1019	32283										
ZNF791	0	genome.wustl.edu	37	chr19	12739852	12739852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaatgtaaggaatgcgggaaGgcctttatttatcccacaag	11	7	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	12739852	12739852	G	T	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.1509	p.K503N	0.284	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	152	0	0	102	18	15	-	-	-	T	12739852	G	T	12739852	3	4	281	1	0	0	0	0	1	0	0	0	18256	991	35	4	1523	4	ZNF791	19	12739852	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	279275	12739852	46389131	1020	32284										
MAST1	0	genome.wustl.edu	37	chr19	12958741	12958741	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgttctgcctctggccgatgGcgtgctcagcttcatccacc	10	16	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	12958741	12958741	G	A	SNP	MAST1	ENST00000588379	human	ensembl	69_37n	1	putative	nonsense	c.504	p.W168*	1.000	pfam_MA_Ser/Thr_Kinase_dom,superfamily_MAST_pre-PK_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,superfamily_MAST_pre-PK_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAST1	HGNC	ENSG00000105613	47	0	0	27	14	33.33	-	-	-	A	12958741	G	A	12958741	4	1	281	1	0	0	0	0	0	1	0	0	9395	1203	42	4	670	4	MAST1	19	12958741	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	218889	12958741	46170242	1021	32285										
NANOS3	0	genome.wustl.edu	37	chr19	13988235	13988235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccggagtcggtgccagtgcCgggacccaaggatcagaagc	16	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	13988235	13988235	C	A	SNP	NANOS3	ENST00000339133	human	ensembl	69_37n	1	known	missense	c.173	p.P58Q	0.362	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556	46	0	0	20	11	35.48	-	-	-	A	13988235	C	A	13988235	3	1	281	1	0	0	0	0	1	0	0	0	10225	652	23	3	175	3	NANOS3	19	13988235	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1029494	13988235	45140748	1022	32286										
JAK3	0	genome.wustl.edu	37	chr19	17945532	17945532	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctcataaaattggagtttcTgagggtgagaggagcagtcg	14	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	17945532	17945532	T	C	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	splice_site	c.2200-2	e16-2	1.000	-	-	-	no_errors	JAK3	HGNC	ENSG00000105639	98	0	0	45	13	22.41	-	-	-	C	17945532	T	C	17945532	5	2	281	1	0	0	0	0	0	0	1	0	7993	1594	55	5	1208	5	JAK3	19	17945532	Splice_Site	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	3957297	17945532	41183451	1023	32287										
KIAA1683	0	genome.wustl.edu	37	chr19	18377937	18377937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtgtctcttgttgaagcgcCgccaggcctcctggatggcc	13	13	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	18377937	18377937	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	missense	c.413	p.R138Q	0.152	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	30	0	0	30	7	18.92	-	-	-	T	18377937	C	T	18377937	3	4	281	1	0	0	0	0	1	0	0	0	8303	652	23	1	3698	1	KIAA1683	19	18377937	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	432405	18377937	40751046	1024	32288										
NCAN	0	genome.wustl.edu	37	chr19	19335238	19335238	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tattgctttgcccgggagctGgggggtaagtctgggactgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	19335238	19335238	G	-	DEL	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	frame_shift_del	c.774	p.G260fs	0.993	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	79	0	0	23	5	17.24	-	-	-	-	19335238	G	-	19335238	7	5	281	1	0	1	0	1	0	0	0	0	10276	1335	47	0	788	0	NCAN	19	19335238	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	957301	19335238	39793745	1025	32289										
TSSK6	0	genome.wustl.edu	37	chr19	19625640	19625640	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accatgacgtagagcacgacGcccatgctccacacatcgta	8	15	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	19625640	19625640	G	A	SNP	TSSK6	ENST00000360913	human	ensembl	69_37n	-1	known	silent	c.597	p.G199	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093	21	0	0	4	4	50	-	-	-	A	19625640	G	A	19625640	2	1	281	1	0	0	0	0	0	0	0	1	16768	1074	38	1		1	TSSK6	19	19625640	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	290402	19625640	39503343	1026	32290										
ZNF93	0	genome.wustl.edu	37	chr19	20044952	20044952	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttcatactggagagaagccCtacaaatgtgaagaatgtgg	12	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	20044952	20044952	C	A	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	silent	c.1188	p.P396	0.878	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	438	0	0	245	87	26.2	-	-	-	A	20044952	C	A	20044952	2	1	281	1	0	0	0	0	0	0	0	1	18295	668	24	4		4	ZNF93	19	20044952	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	419312	20044952	39084031	1027	32291										
ZNF98	0	genome.wustl.edu	37	chr19	22575695	22575695	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtaaattttcacgtccacaTtttttatatgttctcagtat							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	22575695	22575695	T	-	DEL	ZNF98	ENST00000357774	human	ensembl	69_37n	-1	known	frame_shift_del	c.342	p.K114fs	0.024	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360	76	0	0	59	16	21.05	-	-	-	-	22575695	T	-	22575695	7	5	281	1	0	1	0	1	0	0	0	0	18296	1490	52	0	1380	0	ZNF98	19	22575695	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	2530743	22575695	36553288	1028	32292										
ZNF675	0	genome.wustl.edu	37	chr19	23836782	23836782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggattgggtaaaagccttgCcacattcttcacatatgtag	9	8	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	23836782	23836782	C	T	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	missense	c.953	p.G318D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	240	0	0	138	27	16.36	-	-	-	T	23836782	C	T	23836782	3	4	281	1	0	0	0	0	1	0	0	0	18178	739	26	4	757	4	ZNF675	19	23836782	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1261087	23836782	35292201	1029	32293										
ZNF254	0	genome.wustl.edu	37	chr19	24309669	24309669	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacataagataattcatacTggagagaaaccttacaagtg	7	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	24309669	24309669	T	C	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	silent	c.867	p.T289	0.965	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	277	1	0.36	196	47	19.34	-	-	-	C	24309669	T	C	24309669	2	2	281	1	0	0	0	0	0	0	0	1	17894	1567	55	5		5	ZNF254	19	24309669	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	472887	24309669	34819314	1030	32294										
C19orf12	0	genome.wustl.edu	37	chr19	30193800	30193800	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agagcctctgttgctcggcaGggggcagctccattaggatc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	30193800	30193800	G	-	DEL	C19orf12	ENST00000392278	human	ensembl	69_37n	-1	known	frame_shift_del	c.278	p.P93fs	0.800	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943	63	0	0	47	21	30.43	-	-	-	-	30193800	G	-	30193800	7	5	281	1	0	1	0	1	0	0	0	0	1927	1000	35	0	184	0	C19orf12	19	30193800	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	5884131	30193800	28935183	1031	32295										
SLC7A9	0	genome.wustl.edu	37	chr19	33353088	33353088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctcccacagacagctgggCgccctcgaaagaattatcaa	10	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	33353088	33353088	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	missense	c.640	p.A214T	0.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	103	0	0	107	17	13.71	-	-	-	T	33353088	C	T	33353088	3	4	281	1	0	0	0	0	1	0	0	0	14794	768	27	1	855	1	SLC7A9	19	33353088	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3159288	33353088	25775895	1032	32296										
SCN1B	0	genome.wustl.edu	37	chr19	35530162	35530162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gactgctgcacaggagaatgCgtgagtagggtggctgggag	19	6	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	35530162	35530162	C	T	SNP	SCN1B	ENST00000262631	human	ensembl	69_37n	1	known	missense	c.590	p.A197V	1.000	NULL	pfam_Immunoglobulin,pfam_Ig_V-set	-	no_errors	SCN1B	HGNC	ENSG00000105711	72	0	0	41	9	18	-	-	-	T	35530162	C	T	35530162	3	4	281	1	0	0	0	0	1	0	0	0	14003	782	27	1	963	1	SCN1B	19	35530162	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2177074	35530162	23598821	1033	32297										
LSR	0	genome.wustl.edu	37	chr19	35739784	35739784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctcattaaaacttccagaatGcaacaggacggacttggagt	9	9	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	35739784	35739784	G	A	SNP	LSR	ENST00000361790	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	19	0	0	11	7	38.89	-	-	-	A	35739784	G	A	35739784	3	1	281	1	0	0	0	0	1	0	0	0	9130	1319	46	4	5	4	LSR	19	35739784	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	209622	35739784	23389199	1034	32298										
CD22	0	genome.wustl.edu	37	chr19	35832857	35832857	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgttcgcctctcagcacccTcaccgtctactgtaaggcct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	35832857	35832857	T	-	DEL	CD22	ENST00000085219	human	ensembl	69_37n	1	known	frame_shift_del	c.2024	p.L675fs	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	236	0	0	185	53	21.2	-	-	-	-	35832857	T	-	35832857	7	5	281	1	0	1	0	1	0	0	0	0	3014	1551	54	0	2054	0	CD22	19	35832857	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	93073	35832857	23296126	1035	32299										
TMEM147	0	genome.wustl.edu	37	chr19	36038064	36038064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaggtctggatgataacacGctatgatctgtaccacacct	8	11	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	36038064	36038064	G	A	SNP	TMEM147	ENST00000222284	human	ensembl	69_37n	1	known	missense	c.473	p.R158H	1.000	pfam_DUF2053_membrane	pfam_DUF2053_membrane	-	no_errors	TMEM147	HGNC	ENSG00000105677	55	0	0	31	11	26.19	-	-	-	A	36038064	G	A	36038064	3	1	281	1	0	0	0	0	1	0	0	0	16156	1087	38	1	495	1	TMEM147	19	36038064	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	205207	36038064	23090919	1036	32300										
UPK1A	0	genome.wustl.edu	37	chr19	36166880	36166880	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acttcatccccctcaacgagGagggctgccgcctggggcac	12	16	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	36166880	36166880	G	T	SNP	UPK1A	ENST00000379013	human	ensembl	69_37n	1	known	nonsense	c.607	p.E203*	0.951	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668	21	0	0	4	10	71.43	-	-	-	T	36166880	G	T	36166880	4	4	281	1	0	0	0	0	0	1	0	0	17104	1175	41	2	625	2	UPK1A	19	36166880	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	128816	36166880	22962103	1037	32301										
MLL4	0	genome.wustl.edu	37	chr19	36224729	36224729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctccccaggtccccgatgGtcccccagacctgctgcttg	9	19	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	36224729	36224729	G	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.7115	p.G2372V	0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	28	0	0	8	12	60	-	-	-	T	36224729	G	T	36224729	3	4	281	1	0	0	0	0	1	0	0	0	9694	1261	44	4	7233	4	MLL4	19	36224729	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	57849	36224729	22904254	1038	32302										
MLL4	0	genome.wustl.edu	37	chr19	36229011	36229011	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtaagcgcaacatcgacgcGggggagatggtcatcgagta							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	36229011	36229011	G	-	DEL	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_del	c.7791	p.E2599fs	0.004	pirsf_MeTrfase_trithorax,pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	36	0	0	28	18	37.5	-	-	-	-	36229011	G	-	36229011	7	5	281	1	0	1	0	1	0	0	0	0	9694	1103	39	0	7933	0	MLL4	19	36229011	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	4282	36229011	22899972	1039	32303										
ZFP82	0	genome.wustl.edu	37	chr19	36884650	36884650	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccacattccttacattcatAcggtttttcaccagtatgaa	4	12	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	36884650	36884650	A	G	SNP	ZFP82	ENST00000392161	human	ensembl	69_37n	-1	known	missense	c.592	p.Y198H	0.883	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007	221	0	0	203	108	34.73	-	-	-	G	36884650	A	G	36884650	3	3	281	1	0	0	0	0	1	0	0	0	17749	391	14	5	1010	5	ZFP82	19	36884650	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	655639	36884650	22244333	1040	32304										
ZNF527	0	genome.wustl.edu	37	chr19	37879980	37879980	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaagctttcagacagagtgcTcaccttgctcaacatcagag	8	11	4	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	37879980	37879980	T	C	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	silent	c.1029	p.A343	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	229	1	0.43	222	44	16.54	-	-	-	C	37879980	T	C	37879980	2	2	281	1	0	0	0	0	0	0	0	1	18064	1538	54	5		5	ZNF527	19	37879980	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	995330	37879980	21249003	1041	32305										
SIPA1L3	0	genome.wustl.edu	37	chr19	38632037	38632037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccctgaagcagacccccatAgtccccttccgggagtccca	8	19	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	38632037	38632037	A	G	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.3357	p.I1119M	0.900	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	71	0	0	73	15	17.05	-	-	-	G	38632037	A	G	38632037	3	3	281	1	0	0	0	0	1	0	0	0	14420	410	15	5	3391	5	SIPA1L3	19	38632037	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	752057	38632037	20496946	1042	32306										
ACTN4	0	genome.wustl.edu	37	chr19	39207906	39207906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacgctgcagaccaagctgCgcctcagcaaccggcccgcc	10	19	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	39207906	39207906	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	missense	c.1093	p.R365C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	32	0	0	17	6	26.09	-	-	-	T	39207906	C	T	39207906	3	4	281	1	0	0	0	0	1	0	0	0	207	768	27	1	1131	1	ACTN4	19	39207906	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	575869	39207906	19921077	1043	32307										
SUPT5H	0	genome.wustl.edu	37	chr19	39959803	39959804	+	Frame_Shift_Del	DEL	GA	GA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgacctggaggtggtgactGagagcacaggtatttgatcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	39959803	39959804	GA	-	DEL	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	frame_shift_del	c.1228_1229	p.S411fs	1.000:1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	65	0	0	52	16	23.53	-	-	-	-	39959804	GA	-	39959803	7	5	281	1	0	1	0	1	0	0	0	0	15490	1291	45	0	1282	0	SUPT5H	19	39959803	Frame_Shift_Del	DEL	GA	TCGA-AN-A0AK-01A-21W-A019-09	751897	39959803	19169180	1044	32308										
SUPT5H	0	genome.wustl.edu	37	chr19	39960834	39960834	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acgtgaaggtgattgctggcCgattcgagggcgacacaggc	16	9	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	39960834	39960834	C	T	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	nonsense	c.1450	p.R484*	1.000	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	268	0	0	216	43	16.6	-	-	-	T	39960834	C	T	39960834	4	4	281	1	0	0	0	0	0	1	0	0	15490	644	23	1	1512	1	SUPT5H	19	39960834	Nonsense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1031	39960834	19168149	1045	32309										
FCGBP	0	genome.wustl.edu	37	chr19	40399678	40399678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cattggcccagcagccgcagCcgttgttgaggggaacacag	14	12	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	40399678	40399678	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.6017	p.G2006D	0.941	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	14	0	0	4	3	42.86	-	-	-	T	40399678	C	T	40399678	3	4	281	1	0	0	0	0	1	0	0	0	5824	739	26	4	10296	4	FCGBP	19	40399678	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	438844	40399678	18729305	1046	32310										
CYP2A13	0	genome.wustl.edu	37	chr19	41595975	41595975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggcgttcagcaacggggagCgcgccaagcagctccggcgc	16	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	41595975	41595975	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.367	p.R123C	0.616	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	26	0	0	18	12	40	-	-	-	T	41595975	C	T	41595975	3	4	281	1	0	0	0	0	1	0	0	0	4192	768	27	1	377	1	CYP2A13	19	41595975	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1196297	41595975	17533008	1047	32311										
CYP2F1	0	genome.wustl.edu	37	chr19	41627938	41627938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttccagaacttcaagtgccTgagagacctcatcgcccaca	7	15	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	41627938	41627938	T	C	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	1	known	missense	c.722	p.L241P	0.982	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	70	0	0	64	13	16.88	-	-	-	C	41627938	T	C	41627938	3	2	281	1	0	0	0	0	1	0	0	0	4202	1580	55	5	740	5	CYP2F1	19	41627938	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	31963	41627938	17501045	1048	32312										
AXL	0	genome.wustl.edu	37	chr19	41744480	41744480	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcagggtaccctgttagggtAccggctggcgtatcaaggcc	15	11	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	41744480	41744480	A	G	SNP	AXL	ENST00000301178	human	ensembl	69_37n	1	known	missense	c.1100	p.Y367C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	28	0	0	27	5	15.15	-	-	-	G	41744480	A	G	41744480	3	3	281	1	0	0	0	0	1	0	0	0	1242	391	14	5	1130	5	AXL	19	41744480	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	116542	41744480	17384503	1049	32313										
CCDC97	0	genome.wustl.edu	37	chr19	41825581	41825581	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaggagctcagtgcccgcaCcccaacccaccagcccccca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	41825581	41825581	C	-	DEL	CCDC97	ENST00000269967	human	ensembl	69_37n	1	known	frame_shift_del	c.605	p.P203fs	0.346	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039	216	0	0	183	28	13.15	-	-	-	-	41825581	C	-	41825581	7	5	281	1	0	1	0	1	0	0	0	0	2902	507	18	0	615	0	CCDC97	19	41825581	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	81101	41825581	17303402	1050	32314										
TMEM145	0	genome.wustl.edu	37	chr19	42819357	42819357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagggatcctggagacagatGtgaccttcctcctcatcttc	9	13	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	42819357	42819357	G	A	SNP	TMEM145	ENST00000301204	human	ensembl	69_37n	1	known	missense	c.523	p.V175M	1.000	pfam_Rhodopsin-like_GPCR_TM_domain	pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	TMEM145	HGNC	ENSG00000167619	160	0	0	109	25	18.66	-	-	-	A	42819357	G	A	42819357	3	1	281	1	0	0	0	0	1	0	0	0	16154	1377	48	4	549	4	TMEM145	19	42819357	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	993776	42819357	16309626	1051	32315										
PSG8	0	genome.wustl.edu	37	chr19	43258550	43258550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgagttacgaacagagcaaGcatagagcccgctatgcttt	10	10	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	43258550	43258550	G	A	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.1178	p.A393V	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	537	0	0	406	172	29.76	-	-	-	A	43258550	G	A	43258550	3	1	281	1	0	0	0	0	1	0	0	0	12741	971	34	4	127	4	PSG8	19	43258550	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	439193	43258550	15870433	1052	32316										
PLAUR	0	genome.wustl.edu	37	chr19	44153221	44153221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatgtggttcatgctgaaggCgtcacccaggtgggcatgtt	14	8	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	44153221	44153221	C	T	SNP	PLAUR	ENST00000340093	human	ensembl	69_37n	-1	known	missense	c.829	p.A277T	0.440	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PLAUR	HGNC	ENSG00000011422	74	0	0	62	13	17.33	-	-	-	T	44153221	C	T	44153221	3	4	281	1	0	0	0	0	1	0	0	0	12097	768	27	1	278	1	PLAUR	19	44153221	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	894671	44153221	14975762	1053	32317										
ZNF221	0	genome.wustl.edu	37	chr19	44471307	44471307	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agtaaatttaatcttgacatGcaccagagggtccacggggg	12	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	44471307	44471307	G	A	SNP	ZNF221	ENST00000251269	human	ensembl	69_37n	1	known	missense	c.1653	p.M551I	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905	216	0	0	180	84	31.82	-	-	-	A	44471307	G	A	44471307	3	1	281	1	0	0	0	0	1	0	0	0	17871	1319	46	4	1667	4	ZNF221	19	44471307	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	318086	44471307	14657676	1054	32318										
ZNF225	0	genome.wustl.edu	37	chr19	44636115	44636115	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttgactttcatcagagggtcCacagaggagagaaaccctat	10	9	2	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	44636115	44636115	C	A	SNP	ZNF225	ENST00000262894	human	ensembl	69_37n	1	known	missense	c.1348	p.H450N	0.988	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294	317	0	0	333	76	18.58	-	-	-	A	44636115	C	A	44636115	3	1	281	1	0	0	0	0	1	0	0	0	17875	594	21	4	1362	4	ZNF225	19	44636115	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	164808	44636115	14492868	1055	32319										
BCL3	0	genome.wustl.edu	37	chr19	45262737	45262737	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcccagtctccccccagggaCccccctggattccccatggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	45262737	45262737	C	-	DEL	BCL3	ENST00000164227	human	ensembl	69_37n	1	known	frame_shift_del	c.1230	p.P412fs	0.183	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BCL3	HGNC	ENSG00000069399	111	0	0	67	16	19.05	-	-	-	-	45262737	C	-	45262737	7	5	281	1	0	1	0	1	0	0	0	0	1379	506	18	0	1264	0	BCL3	19	45262737	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	626622	45262737	13866246	1056	32320										
CCDC8	0	genome.wustl.edu	37	chr19	46915364	46915364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctctggcgccgatgataccCctgcgctctccactgcggtg	11	17	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	46915364	46915364	C	A	SNP	CCDC8	ENST00000307522	human	ensembl	69_37n	-1	known	missense	c.704	p.G235V	0.000	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515	31	0	0	20	10	33.33	-	-	-	A	46915364	C	A	46915364	3	1	281	1	0	0	0	0	1	0	0	0	2880	623	22	4	916	4	CCDC8	19	46915364	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1652627	46915364	12213619	1057	32321										
EMP3	0	genome.wustl.edu	37	chr19	48832705	48832707	+	In_Frame_Del	DEL	GAG	GAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagctctacaccatgcgacGaggaggtctcttctatgcca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	48832705	48832707	GAG	-	DEL	EMP3	ENST00000270221	human	ensembl	69_37n	1	known	in_frame_del	c.278_280	p.G95in_frame_del	0.773:0.787:1.000	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22_EMP_MP20	pfam_PMP22/EMP/MP20/Claudin,prints_EMP_3,prints_PMP22_EMP_MP20	-	no_errors	EMP3	HGNC	ENSG00000142227	88	0	0	72	18	20	-	-	-	-	48832707	GAG	-	48832705	7	5	281	1	0	1	0	1	0	0	0	0	5140	1058	37	0	288	0	EMP3	19	48832705	In_Frame_Del	DEL	GAG	TCGA-AN-A0AK-01A-21W-A019-09	1917341	48832705	10296278	1058	32322										
KDELR1	0	genome.wustl.edu	37	chr19	48892897	48892897	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actctgaacgtgtcatggttCccatcgtaagtagctttgaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	48892897	48892897	C	-	DEL	KDELR1	ENST00000330720	human	ensembl	69_37n	-1	known	frame_shift_del	c.264	p.N89fs	0.926	pfam_ER_ret_rcpt	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR1	HGNC	ENSG00000105438	89	0	0	85	79	48.17	-	-	-	-	48892897	C	-	48892897	7	5	281	1	0	1	0	1	0	0	0	0	8173	842	30	0	386	0	KDELR1	19	48892897	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	60192	48892897	10236086	1059	32323	257	2								
KDELR1	0	genome.wustl.edu	37	chr19	48892902	48892903	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aacgtgtcatggttcccatcINSgtaagtagctttgaacttgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	48892902	48892903	-	T	INS	KDELR1	ENST00000330720	human	ensembl	69_37n	-1	known	frame_shift_ins	c.259_258	p.D86fs	1.000:0.833	pfam_ER_ret_rcpt	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR1	HGNC	ENSG00000105438	88	0	0	85	71	45.51	-	-	-	T	48892903	-	T	48892902	7	5	281	1	0	1	1	0	0	0	0	0	8173	884	31	0	391	0	KDELR1	19	48892902	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	5	48892902	10236081	1060	32324	257	2								
BAX	0	genome.wustl.edu	37	chr19	49459481	49459481	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgccgccgtggacacagactCcccccgagaggtctttttcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	49459481	49459481	C	-	DEL	BAX	ENST00000293288	human	ensembl	69_37n	1	known	frame_shift_del	c.260	p.R89fs	1.000	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BAX	HGNC	ENSG00000087088	72	0	0	32	17	34	-	-	-	-	49459481	C	-	49459481	7	5	281	1	0	1	0	1	0	0	0	0	1332	855	30	0	274	0	BAX	19	49459481	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	566579	49459481	9669502	1061	32325										
RUVBL2	0	genome.wustl.edu	37	chr19	49513294	49513294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggccgctccttcacacgcGcccgcgactacgacgctatg	11	17	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	49513294	49513294	G	A	SNP	RUVBL2	ENST00000221413	human	ensembl	69_37n	1	known	missense	c.634	p.A212T	1.000	pfam_TIP49_C,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase	pfam_TIP49_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_DnaB-like_C,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase,prints_DNA_repair_RadA	-	no_errors	RUVBL2	HGNC	ENSG00000183207	25	0	0	12	9	42.86	-	-	-	A	49513294	G	A	49513294	3	1	281	1	0	0	0	0	1	0	0	0	13839	1087	38	1	664	1	RUVBL2	19	49513294	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	53813	49513294	9615689	1062	32326										
CGB2	0	genome.wustl.edu	37	chr19	49536219	49536219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaggtggtgtgcaactaccGcgatgtgcgcttcgagtcca	13	11	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	49536219	49536219	G	A	SNP	CGB2	ENST00000359342	human	ensembl	69_37n	1	known	missense	c.233	p.R78H	0.644	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB2	HGNC	ENSG00000104818	17	0	0	11	10	47.62	-	-	-	A	49536219	G	A	49536219	3	1	281	1	0	0	0	0	1	0	0	0	3327	1087	38	1	243	1	CGB2	19	49536219	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	22925	49536219	9592764	1063	32327										
HRC	0	genome.wustl.edu	37	chr19	49657760	49657760	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcatcatcatcatcgtcatcTtcttcatggccttggtgcct	6	13	8	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	49657760	49657760	T	A	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.735	p.E245D	0.204	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	91	0	0	46	8	14.81	-	-	-	A	49657760	T	A	49657760	3	1	281	1	0	0	0	0	1	0	0	0	7403	1606	56	5	1388	5	HRC	19	49657760	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	121541	49657760	9471223	1064	32328										
CCDC155	0	genome.wustl.edu	37	chr19	49899049	49899049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attagagctggaagaggagaCcgccttccagggagccctga	14	10	0	4			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	49899049	49899049	C	T	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.359	p.T120I	0.774	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	17	0	0	8	9	52.94	-	-	-	T	49899049	C	T	49899049	3	4	281	1	0	0	0	0	1	0	0	0	2814	507	18	4	373	4	CCDC155	19	49899049	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	241289	49899049	9229934	1065	32329										
PTOV1	0	genome.wustl.edu	37	chr19	50360301	50360303	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcatgctcctgtactcgtccAagaagaagatcttcatgggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	50360301	50360303	AAG	-	DEL	PTOV1	ENST00000391842	human	ensembl	69_37n	1	known	in_frame_del	c.628_630	p.K212in_frame_del	1.000:1.000:1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960	108	0	0	46	10	17.86	-	-	-	-	50360303	AAG	-	50360301	7	5	281	1	0	1	0	1	0	0	0	0	12850	131	5	0	650	0	PTOV1	19	50360301	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	461252	50360301	8768682	1066	32330										
NUP62	0	genome.wustl.edu	37	chr19	50411867	50411867	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caggtcttccagctccttctGctgggacaggatgaagtcga	12	11	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	50411867	50411867	G	A	SNP	NUP62	ENST00000352066	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.Q400*	1.000	pfam_Nucleoporin_NSP1_C	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024	71	0	0	47	10	17.54	-	-	-	A	50411867	G	A	50411867	4	1	281	1	0	0	0	0	0	1	0	0	10841	1328	46	4	374	4	NUP62	19	50411867	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	51566	50411867	8717116	1067	32331										
KLK5	0	genome.wustl.edu	37	chr19	51452297	51452298	+	Frame_Shift_Ins	INS	-	-	C													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agggtgggggatggatttgaINSccccctggaacatctgctgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	51452297	51452298	-	C	INS	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	frame_shift_ins	c.410_409	p.V137fs	0.004:0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	32	0	0	23	14	37.84	-	-	-	C	51452298	-	C	51452297	7	5	281	1	0	1	1	0	0	0	0	0	8460	275	10	0	483	0	KLK5	19	51452297	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	1040430	51452297	7676686	1068	32332										
SIGLEC8	0	genome.wustl.edu	37	chr19	51960770	51960770	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acacctgtcccaggcaaggtCacctgacaggtgaggctggt	13	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	51960770	51960770	C	A	SNP	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	silent	c.678	p.V226	0.171	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	85	0	0	67	8	10.67	-	-	-	A	51960770	C	A	51960770	2	1	281	1	0	0	0	0	0	0	0	1	14403	813	29	2		2	SIGLEC8	19	51960770	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	508473	51960770	7168213	1069	32333										
ZNF528	0	genome.wustl.edu	37	chr19	52918609	52918609	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaatatagaaataattttgaTcatgctccattacttccaca	3	8	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	52918609	52918609	T	A	SNP	ZNF528	ENST00000360465	human	ensembl	69_37n	1	known	missense	c.504	p.D168E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555	170	0	0	124	65	34.39	-	-	-	A	52918609	T	A	52918609	3	1	281	1	0	0	0	0	1	0	0	0	18065	1432	50	5	518	5	ZNF528	19	52918609	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	957839	52918609	6210374	1070	32334										
ZNF611	0	genome.wustl.edu	37	chr19	53208724	53208724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctccagtatgacctatcttAtgtgtctcaaggcttgattt	7	9	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	53208724	53208724	A	G	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	silent	c.1584	p.H528	0.227	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	724	0	0	599	114	15.99	-	-	-	G	53208724	A	G	53208724	2	3	281	1	0	0	0	0	0	0	0	1	18133	446	16	5		5	ZNF611	19	53208724	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	290115	53208724	5920259	1071	32335										
CNOT3	0	genome.wustl.edu	37	chr19	54649495	54649495	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tactatgttgactcatcccaGgaccccgacttcgaggagaa	9	12	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	54649495	54649495	G	T	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.645	p.Q215H	1.000	pfam_Not_N,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	112	0	0	64	16	20	-	-	-	T	54649495	G	T	54649495	3	4	281	1	0	0	0	0	1	0	0	0	3650	991	35	4	671	4	CNOT3	19	54649495	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1440771	54649495	4479488	1072	32336										
TSEN34	0	genome.wustl.edu	37	chr19	54695601	54695601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tccttcaagcgccagcaagaGgagagcttccaggagcagag	13	11	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	54695601	54695601	G	T	SNP	TSEN34	ENST00000429671	human	ensembl	69_37n	1	known	missense	c.273	p.E91D	0.957	pirsf_tRNA_splic_SEN34	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN34,tigrfam_tRNA_splic	-	no_errors	TSEN34	HGNC	ENSG00000170892	107	0	0	70	15	17.65	-	-	-	T	54695601	G	T	54695601	3	4	281	1	0	0	0	0	1	0	0	0	16709	991	35	4	279	4	TSEN34	19	54695601	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	46106	54695601	4433382	1073	32337										
PPP1R12C	0	genome.wustl.edu	37	chr19	55607462	55607462	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctcgtcctggatggggggCcccccagccccaccaggccg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	55607462	55607462	C	-	DEL	PPP1R12C	ENST00000263433	human	ensembl	69_37n	-1	known	frame_shift_del	c.1110	p.I373fs	0.002	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503	69	0	0	34	6	14.63	-	-	-	-	55607462	C	-	55607462	7	5	281	1	0	1	0	1	0	0	0	0	12433	726	26	0	1298	0	PPP1R12C	19	55607462	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	911861	55607462	3521521	1074	32338										
NLRP11	0	genome.wustl.edu	37	chr19	56307593	56307593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgatttcttcacattcgctgGctcgcaaatcacatttcatc	5	13	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	56307593	56307593	G	A	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.2195	p.A732V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	203	0	0	209	78	27.18	-	-	-	A	56307593	G	A	56307593	3	1	281	1	0	0	0	0	1	0	0	0	10545	1203	42	4	926	4	NLRP11	19	56307593	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	700131	56307593	2821390	1075	32339										
ZNF805	0	genome.wustl.edu	37	chr19	57765622	57765622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gccacttcagcatccacactGgagagaagccctatgagtgc	10	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	57765622	57765622	G	A	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	missense	c.1435	p.G479R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	152	0	0	138	56	28.87	-	-	-	A	57765622	G	A	57765622	3	1	281	1	0	0	0	0	1	0	0	0	18265	1349	47	4	1449	4	ZNF805	19	57765622	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1458029	57765622	1363361	1076	32340										
ZNF551	0	genome.wustl.edu	37	chr19	58199604	58199604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atgtgggaaatcctttagccGcaaatctaacctcattcgac	7	11	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	58199604	58199604	G	A	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.1961	p.R654H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	425	2	0.47	422	83	16.34	-	-	-	A	58199604	G	A	58199604	3	1	281	1	0	0	0	0	1	0	0	0	18079	1087	38	1	1923	1	ZNF551	19	58199604	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	433982	58199604	929379	1077	32341										
ZNF814	0	genome.wustl.edu	37	chr19	58384947	58384947	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcccacattctccacactcaTaaggcctctctccagtatga	4	16	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	58384947	58384947	T	C	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.1811	p.Y604C	0.032	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	215	0	0	177	64	26.56	-	-	-	C	58384947	T	C	58384947	3	2	281	1	0	0	0	0	1	0	0	0	18269	1406	49	5	760	5	ZNF814	19	58384947	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	185343	58384947	744036	1078	32342										
ZNF446	0	genome.wustl.edu	37	chr19	58988739	58988739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cccggctgcgtgagctgtgtTgccagtggctgcagcctgag	16	12	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	19	58988739	58988739	T	C	SNP	ZNF446	ENST00000335841	human	ensembl	69_37n	1	known	missense	c.154	p.C52R	0.964	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838	53	0	0	29	14	32.56	-	-	-	C	58988739	T	C	58988739	3	2	281	1	0	0	0	0	1	0	0	0	18015	1812	63	5	156	5	ZNF446	19	58988739	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	603792	58988739	140244	1079	32343										
TGM6	0	genome.wustl.edu	37	chr20	2378600	2378600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgaacatctgcctctccatcCtggatcgaagccccggtcac	8	16	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	2378600	2378600	C	T	SNP	TGM6	ENST00000202625	human	ensembl	69_37n	1	known	silent	c.580	p.L194	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948	114	0	0	59	41	41	-	-	-	T	2378600	C	T	2378600	2	4	281	1	0	0	0	0	0	0	0	1	15929	680	24	4		4	TGM6	20	2378600	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09		2378600	60646920	1080	32344										
LRRN4	0	genome.wustl.edu	37	chr20	6022293	6022296	+	Frame_Shift_Del	DEL	CCTT	CCTT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcccacctcctccttcctcCcttcctcctcctcactgtag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CCTT	CCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	6022293	6022296	CCTT	-	DEL	LRRN4	ENST00000378858	human	ensembl	69_37n	-1	known	frame_shift_del	c.1598_1595	p.E532fs	0.000:0.035:0.028:0.079	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872	93	0	0	37	15	28.85	-	-	-	-	6022296	CCTT	-	6022293	7	5	281	1	0	1	0	1	0	0	0	0	9103	623	22	0	628	0	LRRN4	20	6022293	Frame_Shift_Del	DEL	CCTT	TCGA-AN-A0AK-01A-21W-A019-09	3643693	6022293	57003227	1081	32345										
PLCB4	0	genome.wustl.edu	37	chr20	9401999	9401999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tggcacctacgtagaggtggAtatgtatgggttgcccactg	14	8	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	9401999	9401999	A	G	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2174	p.D725G	1.000	pirsf_PLC-beta,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	82	0	0	76	15	16.48	-	-	-	G	9401999	A	G	9401999	3	3	281	1	0	0	0	0	1	0	0	0	12104	333	12	5	2304	5	PLCB4	20	9401999	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3379706	9401999	53623521	1082	32346										
KIF16B	0	genome.wustl.edu	37	chr20	16359595	16359595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtggagtgcctctgcagcgCagaatgtctcctctccagcc	12	14	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	16359595	16359595	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.3052	p.A1018T	0.998	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	414	0	0	446	103	18.73	-	-	-	T	16359595	C	T	16359595	3	4	281	1	0	0	0	0	1	0	0	0	8330	710	25	4	933	4	KIF16B	20	16359595	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6957596	16359595	46665925	1083	32347										
POLR3F	0	genome.wustl.edu	37	chr20	18453564	18453565	+	RNA	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaatgctgggtaagtacttgINStttttttaattttaagaaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	18453564	18453565	-	T	INS	POLR3F	ENST00000475192	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	POLR3F	HGNC	ENSG00000132664	81	0	0	64	13	16.88	-	-	-	T	18453565	-	T	18453564	6	5	281	0	1	1	1	0	0	0	0	0	12307	1392	48	0		0	POLR3F	20	18453564	RNA	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	2093969	18453564	44571956	1084	32348										
POLR3F	0	genome.wustl.edu	37	chr20	18453607	18453607	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttattatttgcaaacgtatGtgttgggaataaagctaata	8	3	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	18453607	18453607	G	A	SNP	POLR3F	ENST00000475192	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	POLR3F	HGNC	ENSG00000132664	40	0	0	32	23	41.82	-	-	-	A	18453607	G	A	18453607	1	1	281	0	1	0	0	0	0	0	0	0	12307	1392	48	4		4	POLR3F	20	18453607	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	43	18453607	44571913	1085	32349										
CRNKL1	0	genome.wustl.edu	37	chr20	20018110	20018111	+	Frame_Shift_Del	DEL	CA	CA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtctctcttccttttcttCacagtttcgcatggttttgt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	20018110	20018111	CA	-	DEL	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	frame_shift_del	c.2236_2235	p.C745fs	1.000:1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	487	0	0	365	45	10.9	-	-	-	-	20018111	CA	-	20018110	7	5	281	1	0	1	0	1	0	0	0	0	3921	835	29	0	318	0	CRNKL1	20	20018110	Frame_Shift_Del	DEL	CA	TCGA-AN-A0AK-01A-21W-A019-09	1564503	20018110	43007410	1086	32350										
PLK1S1	0	genome.wustl.edu	37	chr20	21143057	21143057	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gttgaggaaaaaagagccagCccgccagtctctccgatacc	10	13	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	21143057	21143057	C	T	SNP	PLK1S1	ENST00000246027	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.106	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970	111	0	0	81	18	18.18	-	-	-	T	21143057	C	T	21143057	1	4	281	0	1	0	0	0	0	0	0	0	12169	738	26	4		4	PLK1S1	20	21143057	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1124947	21143057	41882463	1087	32351										
THBD	0	genome.wustl.edu	37	chr20	23029049	23029049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctgaagcacgggtccacggGctccacacactcgccgtcca	10	17	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	23029049	23029049	G	T	SNP	THBD	ENST00000377103	human	ensembl	69_37n	-1	known	missense	c.1093	p.P365T	0.065	pirsf_CD93/CD141,smart_EGF-like_Ca-bd,prints_Thrombomodulin	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726	21	0	0	7	11	61.11	-	-	-	T	23029049	G	T	23029049	3	4	281	1	0	0	0	0	1	0	0	0	15947	1203	42	4	638	4	THBD	20	23029049	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1885992	23029049	39996471	1088	32352										
EDEM2	0	genome.wustl.edu	37	chr20	33725697	33725697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcttacctgggaggagttttCgggccgcctcctcagccatt	11	13	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	33725697	33725697	C	T	SNP	EDEM2	ENST00000374492	human	ensembl	69_37n	-1	known	missense	c.476	p.R159Q	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298	99	0	0	98	20	16.95	-	-	-	T	33725697	C	T	33725697	3	4	281	1	0	0	0	0	1	0	0	0	4947	884	31	1	1288	1	EDEM2	20	33725697	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	10696648	33725697	29299823	1089	32353										
TGIF2	0	genome.wustl.edu	37	chr20	35219312	35219312	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtcttgtatattcattccaGatatgtaactggttcatcaa	7	7	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	35219312	35219312	G	T	SNP	TGIF2	ENST00000373872	human	ensembl	69_37n	1	known	splice_site	c.193-1	e2-1	1.000	-	-	-	no_errors	TGIF2	HGNC	ENSG00000118707	158	0	0	140	20	12.5	-	-	-	T	35219312	G	T	35219312	5	4	281	1	0	0	0	0	0	0	1	0	15921	956	33	2	198	2	TGIF2	20	35219312	Splice_Site	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1493615	35219312	27806208	1090	32354										
RPRD1B	0	genome.wustl.edu	37	chr20	36662353	36662355	+	In_Frame_Del	DEL	TCC	TCC	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcctcactgccgccaccatgTcctccttctctgagtcggcg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	36662353	36662355	TCC	-	DEL	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	in_frame_del	c.4_6	p.S3in_frame_del	1.000:1.000:1.000	superfamily_ENTH_VHS	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	29	0	0	15	13	46.43	-	-	-	-	36662355	TCC	-	36662353	7	5	281	1	0	1	0	1	0	0	0	0	13702	1667	58	0	6	0	RPRD1B	20	36662353	In_Frame_Del	DEL	TCC	TCGA-AN-A0AK-01A-21W-A019-09	1443041	36662353	26363167	1091	32355										
RALGAPB	0	genome.wustl.edu	37	chr20	37146233	37146233	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aagtgctgctgtcagtaccaCccccccacataaccggaggc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	37146233	37146233	C	-	DEL	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	frame_shift_del	c.1136	p.P381fs	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	313	0	0	192	73	27.14	-	-	-	-	37146233	C	-	37146233	7	5	281	1	0	1	0	1	0	0	0	0	13098	507	18	0	1162	0	RALGAPB	20	37146233	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	483880	37146233	25879287	1092	32356										
RALGAPB	0	genome.wustl.edu	37	chr20	37150217	37150217	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	acaccatggtttccaatcctAtgtttgatgcaagtgaattt	7	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	37150217	37150217	A	G	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.1495	p.M499V	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	315	0	0	262	62	19.08	-	-	-	G	37150217	A	G	37150217	3	3	281	1	0	0	0	0	1	0	0	0	13098	449	16	5	1529	5	RALGAPB	20	37150217	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	3984	37150217	25875303	1093	32357										
ZNF335	0	genome.wustl.edu	37	chr20	44589091	44589091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctccaaggggatgtacctgCggttggcaacagcctggatg	14	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	44589091	44589091	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	missense	c.1856	p.R619H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	44	0	0	25	11	30.56	-	-	-	T	44589091	C	T	44589091	3	4	281	1	0	0	0	0	1	0	0	0	17948	768	27	1	2236	1	ZNF335	20	44589091	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	7438874	44589091	18436429	1094	32358										
PREX1	0	genome.wustl.edu	37	chr20	47305234	47305234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggacagtgctcagctttctcCggcggtccttgatgaggttc	13	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	47305234	47305234	C	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.1295	p.R432Q	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	83	0	0	50	12	19.35	-	-	-	T	47305234	C	T	47305234	3	4	281	1	0	0	0	0	1	0	0	0	12557	652	23	1	3808	1	PREX1	20	47305234	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2716143	47305234	15720286	1095	32359										
SLC9A8	0	genome.wustl.edu	37	chr20	48500497	48500497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgtgctcttcaccatcctgcTgctgggcggcagcaccatgc	11	16	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	48500497	48500497	T	C	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.1433	p.L478P	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	90	0	0	51	13	20.31	-	-	-	C	48500497	T	C	48500497	3	2	281	1	0	0	0	0	1	0	0	0	14809	1580	55	5	1439	5	SLC9A8	20	48500497	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1195263	48500497	14525023	1096	32360										
SALL4	0	genome.wustl.edu	37	chr20	50400983	50400983	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggaaaccgggagggtaggaaCccccccactctggatcacag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	50400983	50400983	C	-	DEL	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	frame_shift_del	c.2983	p.V995fs	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	92	0	0	57	16	21.05	-	-	-	-	50400983	C	-	50400983	7	5	281	1	0	1	0	1	0	0	0	0	13899	507	18	0	182	0	SALL4	20	50400983	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	1900486	50400983	12624537	1097	32361										
SALL4	0	genome.wustl.edu	37	chr20	50407595	50407595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagaggtggttacaaggacaGgtttgctgtctaaagaaaga	13	5	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	50407595	50407595	G	A	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	missense	c.1427	p.P476L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	99	0	0	77	19	19.79	-	-	-	A	50407595	G	A	50407595	3	1	281	1	0	0	0	0	1	0	0	0	13899	1000	35	4	1746	4	SALL4	20	50407595	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6612	50407595	12617925	1098	32362										
CYP24A1	0	genome.wustl.edu	37	chr20	52779169	52779169	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctagtgaatcccagtgaaatGaatgagatgaattactattt	8	5	0	5			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	52779169	52779169	G	A	SNP	CYP24A1	ENST00000487593	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP24A1	HGNC	ENSG00000019186	46	0	0	35	24	40.68	-	-	-	A	52779169	G	A	52779169	1	1	281	0	1	0	0	0	0	0	0	0	4185	1305	45	2		2	CYP24A1	20	52779169	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2371574	52779169	10246351	1099	32363										
AURKA	0	genome.wustl.edu	37	chr20	54961339	54961339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccgatggcaggggctgcttgCtcttttgggtgttattcagt	14	8	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	54961339	54961339	C	T	SNP	AURKA	ENST00000312783	human	ensembl	69_37n	-1	known	missense	c.293	p.S98N	0.002	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	246	0	0	179	49	21.49	-	-	-	T	54961339	C	T	54961339	3	4	281	1	0	0	0	0	1	0	0	0	1225	797	28	4	946	4	AURKA	20	54961339	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2182170	54961339	8064181	1100	32364										
CDH26	0	genome.wustl.edu	37	chr20	58559803	58559803	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccattactgaaagaaagtggTttccgggttgatcgccttag	11	8	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	58559803	58559803	T	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.651	p.G217	0.019	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	190	1	0.52	192	34	14.98	-	-	-	G	58559803	T	G	58559803	2	3	281	1	0	0	0	0	0	0	0	1	3139	1712	60	5		5	CDH26	20	58559803	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	3598464	58559803	4465717	1101	32365										
TCEA2	0	genome.wustl.edu	37	chr20	62703329	62703329	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcaggctgcccctcccagctCcattctctggaggtggggtg	13	14	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	20	62703329	62703329	C	T	SNP	TCEA2	ENST00000461072	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TCEA2	HGNC	ENSG00000171703	33	0	0	12	8	40	-	-	-	T	62703329	C	T	62703329	1	4	281	0	1	0	0	0	0	0	0	0	15763	870	30	2		2	TCEA2	20	62703329	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4143526	62703329	322191	1102	32366										
TPTE	0	genome.wustl.edu	37	chr21	10933936	10933936	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttccttggtgaaaaccaccaTctgactgatttcaagtttaa	6	9	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	10933936	10933936	T	C	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.943	p.M315V	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	667	0	0	621	79	11.29	-	-	-	C	10933936	T	C	10933936	3	2	281	1	0	0	0	0	1	0	0	0	16526	1435	50	5	744	5	TPTE	21	10933936	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09		10933936	37195959	1103	32367										
USP25	0	genome.wustl.edu	37	chr21	17203783	17203783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctaatgctgggcactactggGcatatatttttgatcatcgt	9	8	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	17203783	17203783	G	A	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.1828	p.A610T	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	194	0	0	137	39	22.03	-	-	-	A	17203783	G	A	17203783	3	1	281	1	0	0	0	0	1	0	0	0	17153	1203	42	4	1890	4	USP25	21	17203783	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	6269847	17203783	30926112	1104	32368										
ADAMTS5	0	genome.wustl.edu	37	chr21	28315781	28315781	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcatcaatgctggtaaggatGgaagacattaagcgcttatc	11	7	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	28315781	28315781	G	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	silent	c.1323	p.S441	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	41	0	0	39	17	30.36	-	-	-	T	28315781	G	T	28315781	2	4	281	1	0	0	0	0	0	0	0	1	269	1335	47	4		4	ADAMTS5	21	28315781	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	11111998	28315781	19814114	1105	32369										
BACH1	0	genome.wustl.edu	37	chr21	30699365	30699365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cttctggagtgacatttgcaGcacggacactccttgccaaa	9	12	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	30699365	30699365	G	A	SNP	BACH1	ENST00000286800	human	ensembl	69_37n	1	known	missense	c.1220	p.S407N	0.996	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273	229	0	0	196	35	15.15	-	-	-	A	30699365	G	A	30699365	3	1	281	1	0	0	0	0	1	0	0	0	1287	971	34	4	1226	4	BACH1	21	30699365	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2383584	30699365	17430530	1106	32370										
GCFC1	0	genome.wustl.edu	37	chr21	34120848	34120848	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaggagctgaagtcgtatgaGggggttgaataattttggca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	34120848	34120848	G	-	DEL	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	frame_shift_del	c.1885	p.L629fs	1.000	pfam_GCFC_dom	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	168	0	0	169	25	12.89	-	-	-	-	34120848	G	-	34120848	7	5	281	1	0	1	0	1	0	0	0	0	6339	1000	35	0	1018	0	GCFC1	21	34120848	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	3421483	34120848	14009047	1107	32371										
SON	0	genome.wustl.edu	37	chr21	34922033	34922033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attctgaaccttcagctgtgGcgctggagcttcctacaaga	10	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	34922033	34922033	G	A	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	missense	c.496	p.A166T	0.969	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	92	0	0	44	15	25.42	-	-	-	A	34922033	G	A	34922033	3	1	281	1	0	0	0	0	1	0	0	0	15015	1203	42	4	506	4	SON	21	34922033	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	801185	34922033	13207862	1108	32372										
SON	0	genome.wustl.edu	37	chr21	34931975	34931975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atcatctggatctcaacatcGgaaaaaagaagcggatagtg	10	7	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	34931975	34931975	G	A	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	missense	c.6551	p.R2184Q	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	134	0	0	83	19	18.63	-	-	-	A	34931975	G	A	34931975	3	1	281	1	0	0	0	0	1	0	0	0	15015	1116	39	1	6573	1	SON	21	34931975	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	9942	34931975	13197920	1109	32373										
ITSN1	0	genome.wustl.edu	37	chr21	35147278	35147278	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttcatttgttcaagaatgatAaaaagcatcaactagaaggg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	35147278	35147278	A	-	DEL	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	frame_shift_del	c.1462	p.K489fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	184	0	0	213	39	15.23	-	-	-	-	35147278	A	-	35147278	7	5	281	1	0	1	0	1	0	0	0	0	7980	363	13	0	1512	0	ITSN1	21	35147278	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	215303	35147278	12982617	1110	32374										
KRTAP10-9	0	genome.wustl.edu	37	chr21	46047173	46047173	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcccagagagctgctgtgagCccccctgctgcgccaccagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	46047173	46047173	C	-	DEL	KRTAP10-9	ENST00000397911	human	ensembl	69_37n	1	known	frame_shift_del	c.85	p.C31fs	0.998	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	73	0	0	40	29	40.28	-	-	-	-	46047173	C	-	46047173	7	5	281	1	0	1	0	1	0	0	0	0	8569	739	26	0	87	0	KRTAP10-9	21	46047173	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	10899895	46047173	2082722	1111	32375										
KRTAP10-12	0	genome.wustl.edu	37	chr21	46117231	46117231	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcccagagagctgctgtgagCccccctgctgcgccccggcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	46117231	46117231	C	-	DEL	KRTAP10-12	ENST00000400365	human	ensembl	69_37n	1	known	frame_shift_del	c.115	p.C41fs	1.000	NULL	NULL	-	no_errors	KRTAP10-12	HGNC	ENSG00000189169	271	0	0	199	39	16.18	-	-	-	-	46117231	C	-	46117231	7	5	281	1	0	1	0	1	0	0	0	0	8561	739	26	0	117	0	KRTAP10-12	21	46117231	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	70058	46117231	2012664	1112	32376										
ADARB1	0	genome.wustl.edu	37	chr21	46554673	46554673	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cacaccctcattcatccagcGagcattgaggaccccctaga	7	16	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	46554673	46554673	G	A	SNP	ADARB1	ENST00000460734	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADARB1	HGNC	ENSG00000197381	13	0	0	5	4	44.44	-	-	-	A	46554673	G	A	46554673	1	1	281	0	1	0	0	0	0	0	0	0	282	1073	37	1		1	ADARB1	21	46554673	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	437442	46554673	1575222	1113	32377										
DIP2A	0	genome.wustl.edu	37	chr21	47974118	47974118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgcaacctgtgtccagctgCacaaaagggctgagagagtg	13	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	21	47974118	47974118	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.3070	p.H1024Y	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	48	0	0	31	5	13.89	-	-	-	T	47974118	C	T	47974118	3	4	281	1	0	0	0	0	1	0	0	0	4563	710	25	4	3251	4	DIP2A	21	47974118	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1419445	47974118	155777	1114	32378										
HIC2	0	genome.wustl.edu	37	chr22	21800890	21800890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgcgatgagtgtggcatgcGcttcacccgtcagtaccgcc	12	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	21800890	21800890	G	A	SNP	HIC2	ENST00000407464	human	ensembl	69_37n	1	known	missense	c.1706	p.R569H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635	27	0	0	11	4	26.67	-	-	-	A	21800890	G	A	21800890	3	1	281	1	0	0	0	0	1	0	0	0	7153	1087	38	1	1712	1	HIC2	22	21800890	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09		21800890	29503676	1115	32379										
CABIN1	0	genome.wustl.edu	37	chr22	24515602	24515602	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgcctgtgcctgagccgcttCccccagcactataagagtct							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	24515602	24515602	C	-	DEL	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	frame_shift_del	c.4569	p.Q1525fs	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	95	0	0	51	15	22.39	-	-	-	-	24515602	C	-	24515602	7	5	281	1	0	1	0	1	0	0	0	0	2553	854	30	0	4675	0	CABIN1	22	24515602	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	2714712	24515602	26788964	1116	32380										
UPB1	0	genome.wustl.edu	37	chr22	24911232	24911232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agacgcagttcggaaggatcGcggtgaacatttgctacggg	15	8	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	24911232	24911232	G	A	SNP	UPB1	ENST00000326010	human	ensembl	69_37n	1	known	missense	c.685	p.A229T	0.999	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024	110	0	0	73	30	29.13	-	-	-	A	24911232	G	A	24911232	3	1	281	1	0	0	0	0	1	0	0	0	17099	1087	38	1	707	1	UPB1	22	24911232	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	395630	24911232	26393334	1117	32381										
MYO18B	0	genome.wustl.edu	37	chr22	26194051	26194051	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atctaccacctgggtgcggcGggggcctgcaaaggtacgtc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	26194051	26194051	G	-	DEL	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	frame_shift_del	c.2508	p.A838fs	0.455	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	54	0	0	36	11	23.4	-	-	-	-	26194051	G	-	26194051	7	5	281	1	0	1	0	1	0	0	0	0	10138	1103	39	0	2550	0	MYO18B	22	26194051	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	1282819	26194051	25110515	1118	32382										
HPS4	0	genome.wustl.edu	37	chr22	26868817	26868817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cctcataagctagggaaacaGgtccattgtaaaaattaaag	8	7	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	26868817	26868817	G	T	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	missense	c.350	p.P117H	0.995	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	155	0	0	103	22	17.6	-	-	-	T	26868817	G	T	26868817	3	4	281	1	0	0	0	0	1	0	0	0	7392	1000	35	4	1801	4	HPS4	22	26868817	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	674766	26868817	24435749	1119	32383										
EWSR1	0	genome.wustl.edu	37	chr22	29684763	29684763	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggtgggcggggaggaggacGcggtggaatggggtaagagc	24	4	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	29684763	29684763	G	T	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	missense	c.980	p.R327L	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	50	0	0	41	9	18	-	-	-	T	29684763	G	T	29684763	3	4	281	1	0	0	0	0	1	0	0	0	5332	1087	38	3	1014	3	EWSR1	22	29684763	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	2815946	29684763	21619803	1120	32384										
SEC14L2	0	genome.wustl.edu	37	chr22	30806647	30806649	+	In_Frame_Del	DEL	AAG	AAG	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctgagtgaggacactcgtAagaagatcatggtcctggga							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	30806647	30806649	AAG	-	DEL	SEC14L2	ENST00000312932	human	ensembl	69_37n	1	known	in_frame_del	c.643_645	p.K216in_frame_del	0.949:0.986:1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L2	HGNC	ENSG00000100003	42	0	0	40	10	20	-	-	-	-	30806649	AAG	-	30806647	7	5	281	1	0	1	0	1	0	0	0	0	14070	363	13	0	673	0	SEC14L2	22	30806647	In_Frame_Del	DEL	AAG	TCGA-AN-A0AK-01A-21W-A019-09	1121884	30806647	20497919	1121	32385										
SEC14L2	0	genome.wustl.edu	37	chr22	30818390	30818390	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagctgggggcaggcaccccGaaataacaccttctcctata	9	14	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	30818390	30818390	G	A	SNP	SEC14L2	ENST00000312932	human	ensembl	69_37n	1	known	silent	c.1206	p.P402	0.724	NULL	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L2	HGNC	ENSG00000100003	120	0	0	66	19	22.09	-	-	-	A	30818390	G	A	30818390	2	1	281	1	0	0	0	0	0	0	0	1	14070	1045	37	1		1	SEC14L2	22	30818390	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	11743	30818390	20486176	1122	32386										
GAL3ST1	0	genome.wustl.edu	37	chr22	30951959	30951959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagggtgctgctggccgtctTgtgcgtcttcaagaacacga	13	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	30951959	30951959	T	C	SNP	GAL3ST1	ENST00000338911	human	ensembl	69_37n	-1	known	missense	c.253	p.K85E	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242	23	0	0	11	11	50	-	-	-	C	30951959	T	C	30951959	3	2	281	1	0	0	0	0	1	0	0	0	6247	1821	63	5	1022	5	GAL3ST1	22	30951959	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	133569	30951959	20352607	1123	32387										
INPP5J	0	genome.wustl.edu	37	chr22	31522468	31522468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcgacggcgcagacatgatcGccatagggtgaggtggcagg	18	9	0	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	31522468	31522468	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	1	known	missense	c.1378	p.A460T	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	87	0	0	42	13	23.21	-	-	-	A	31522468	G	A	31522468	3	1	281	1	0	0	0	0	1	0	0	0	7813	1087	38	1	284	1	INPP5J	22	31522468	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	570509	31522468	19782098	1124	32388										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31858959	31858959	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtcgccttgttctttttctcCctttgtgatcttcttctagt	6	11	5	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	31858959	31858959	C	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	missense	c.746	p.G249V	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	67	0	0	50	11	17.74	-	-	-	A	31858959	C	A	31858959	3	1	281	1	0	0	0	0	1	0	0	0	5072	623	22	4	2270	4	EIF4ENIF1	22	31858959	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	336491	31858959	19445607	1125	32389										
TIMP3	0	genome.wustl.edu	37	chr22	33245470	33245470	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aaggtggtggggaagaagctGgtaaaggaggggcccttcgg	20	5	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	33245470	33245470	G	A	SNP	TIMP3	ENST00000266085	human	ensembl	69_37n	1	known	silent	c.153	p.L51	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234	21	0	0	15	4	21.05	-	-	-	A	33245470	G	A	33245470	2	1	281	1	0	0	0	0	0	0	0	1	16014	1335	47	4		4	TIMP3	22	33245470	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1386511	33245470	18059096	1126	32390										
CSF2RB	0	genome.wustl.edu	37	chr22	37334116	37334116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccagtggaccccctggagccCcaggccctgtgaagtcaggg	14	15	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	37334116	37334116	C	A	SNP	CSF2RB	ENST00000262825	human	ensembl	69_37n	1	known	missense	c.2284	p.P762T	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368	65	0	0	42	11	20.75	-	-	-	A	37334116	C	A	37334116	3	1	281	1	0	0	0	0	1	0	0	0	3967	623	22	4	2316	4	CSF2RB	22	37334116	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	4088646	37334116	13970450	1127	32391										
EIF3L	0	genome.wustl.edu	37	chr22	38273869	38273869	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcctgccccaagttcctgtcGcctgtagtgcccaactatga	8	15	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	38273869	38273869	G	A	SNP	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	silent	c.1395	p.S465	0.025	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	182	0	0	123	44	26.35	-	-	-	A	38273869	G	A	38273869	2	1	281	1	0	0	0	0	0	0	0	1	5059	1074	38	1		1	EIF3L	22	38273869	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	939753	38273869	13030697	1128	32392										
JOSD1	0	genome.wustl.edu	37	chr22	39085345	39085345	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcatagcctttggtctgaagTgctgccataatgacattcac	8	10	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	39085345	39085345	T	G	SNP	JOSD1	ENST00000216039	human	ensembl	69_37n	-1	known	silent	c.270	p.A90	0.608	pfam_Josephin,pfscan_Josephin	pfam_Josephin,pfscan_Josephin	-	no_errors	JOSD1	HGNC	ENSG00000100221	129	1	0.77	45	47	51.09	-	-	-	G	39085345	T	G	39085345	2	3	281	1	0	0	0	0	0	0	0	1	8012	1683	59	5		5	JOSD1	22	39085345	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	811476	39085345	12219221	1129	32393										
RPL3	0	genome.wustl.edu	37	chr22	39715077	39715078	+	Frame_Shift_Del	DEL	CA	CA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatcagaacgtgacaatcagCacacagtttctgtccgcccg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	39715077	39715078	CA	-	DEL	RPL3	ENST00000453303	human	ensembl	69_37n	-1	putative	frame_shift_del	c.40_39	p.A14fs	1.000:1.000	NULL	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	RPL3	HGNC	ENSG00000100316	34	0	0	24	5	17.24	-	-	-	-	39715078	CA	-	39715077	7	5	281	1	0	1	0	1	0	0	0	0	13665	725	25	0		0	RPL3	22	39715077	Frame_Shift_Del	DEL	CA	TCGA-AN-A0AK-01A-21W-A019-09	629732	39715077	11589489	1130	32394										
TCF20	0	genome.wustl.edu	37	chr22	42610948	42610948	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	attgccaaagctgctcccctGggggggtccatagctctgca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	42610948	42610948	G	-	DEL	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	frame_shift_del	c.364	p.Q122fs	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	255	0	0	156	33	16.92	-	-	-	-	42610948	G	-	42610948	7	5	281	1	0	1	0	1	0	0	0	0	15785	1357	47	0	5556	0	TCF20	22	42610948	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	2895871	42610948	8693618	1131	32395										
PARVG	0	genome.wustl.edu	37	chr22	44592032	44592032	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtttattggatctgtgtctgCagaggacgtctttgatgaat	12	5	3	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	44592032	44592032	C	T	SNP	PARVG	ENST00000472551	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PARVG	HGNC	ENSG00000138964	48	0	0	24	14	36.84	-	-	-	T	44592032	C	T	44592032	1	4	281	0	1	0	0	0	0	0	0	0	11543	725	25	4		4	PARVG	22	44592032	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1981084	44592032	6712534	1132	32396										
CELSR1	0	genome.wustl.edu	37	chr22	46929990	46929990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggcattagggccttcatcAgggtcgttagcacgaatctt	12	9	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	46929990	46929990	A	G	SNP	CELSR1	ENST00000454637	human	ensembl	69_37n	-1	putative	missense	c.1202	p.L401P	0.014	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_EGF-like_dom,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,pfscan_EG-like_dom,pfscan_Cadherin,prints_Cadherin	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CELSR1	HGNC	ENSG00000075275	21	0	0	6	5	45.45	-	-	-	G	46929990	A	G	46929990	3	3	281	1	0	0	0	0	1	0	0	0	3250	175	7	5	6106	5	CELSR1	22	46929990	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2337958	46929990	4374576	1133	32397										
MOV10L1	0	genome.wustl.edu	37	chr22	50582666	50582666	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtgaacgccacctgcaggttCgaggaggtgagcccttggtg	16	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	22	50582666	50582666	C	T	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	silent	c.2499	p.F833	0.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	49	0	0	34	13	27.66	-	-	-	T	50582666	C	T	50582666	2	4	281	1	0	0	0	0	0	0	0	1	9791	883	31	1		1	MOV10L1	22	50582666	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3652676	50582666	721900	1134	32398										
SLC25A6	0	genome.wustl.edu	37	chrX	1508427	1508427	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actgcgtgtgcttgtccacgCcccccaggaagatctgcttg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	1508427	1508427	C	-	DEL	SLC25A6	ENST00000381401	human	ensembl	69_37n	-1	known	frame_shift_del	c.305	p.G102fs	0.982	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100	88	0	0	27	16	36.36	-	-	-	-	1508427	C	-	1508427	7	5	281	1	0	1	0	1	0	0	0	0	14602	739	26	0	603	0	SLC25A6	23	1508427	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09		1508427	153762133	1135	32399										
ZBED1	0	genome.wustl.edu	37	chrX	2408734	2408734	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accagcttcaggtctgtctgGgagctctccaggcttttatt	10	11	4	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	2408734	2408734	G	T	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	0.004	NULL	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	103	0	0	71	9	11.25	-	-	-	T	2408734	G	T	2408734	2	4	281	1	0	0	0	0	0	0	0	1	17614	1219	43	4		4	ZBED1	23	2408734	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	900307	2408734	152861826	1136	32400										
ARSF	0	genome.wustl.edu	37	chrX	3002327	3002327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcgactcccgaagtgaccaGtgccaccatccatataatta	7	13	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	3002327	3002327	G	A	SNP	ARSF	ENST00000359361	human	ensembl	69_37n	1	known	silent	c.450	p.Q150	0.999	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096	74	0	0	80	12	13.04	-	-	-	A	3002327	G	A	3002327	2	1	281	1	0	0	0	0	0	0	0	1	995	1020	36	4		4	ARSF	23	3002327	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	593593	3002327	152268233	1137	32401										
NLGN4X	0	genome.wustl.edu	37	chrX	5821584	5821584	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atccacgatgccgtccacgaActtcaggccttccccttggt	8	16	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	5821584	5821584	A	G	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.1195	p.F399L	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	65	0	0	42	22	34.38	-	-	-	G	5821584	A	G	5821584	3	3	281	1	0	0	0	0	1	0	0	0	10536	43	2	5	1323	5	NLGN4X	23	5821584	Missense_Mutation	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2819257	5821584	149448976	1138	32402										
CLCN4	0	genome.wustl.edu	37	chrX	10180693	10180693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggagctgcggcctgcctcGgtacgaccatgggtggggca	18	11	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	10180693	10180693	G	A	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	missense	c.1576	p.G526S	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	24	0	0	12	15	55.56	-	-	-	A	10180693	G	A	10180693	3	1	281	1	0	0	0	0	1	0	0	0	3495	1130	39	1	1606	1	CLCN4	23	10180693	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4359109	10180693	145089867	1139	32403										
FRMPD4	0	genome.wustl.edu	37	chrX	12627960	12627960	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgggatttggttttgtggcAggcagtgaaaagccagtggt	16	5	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	12627960	12627960	A	C	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	silent	c.279	p.A93	0.884	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	85	0	0	75	13	14.61	-	-	-	C	12627960	A	C	12627960	2	2	281	1	0	0	0	0	0	0	0	1	6108	175	7	5		5	FRMPD4	23	12627960	Silent	SNP	A	TCGA-AN-A0AK-01A-21W-A019-09	2447267	12627960	142642600	1140	32404										
FRMPD4	0	genome.wustl.edu	37	chrX	12736312	12736312	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagagcttctggtcttgggGcaagggaggccgaagggaag	18	7	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	12736312	12736312	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3367	p.A1123T	0.069	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	260	0	0	241	28	10.41	-	-	-	A	12736312	G	A	12736312	3	1	281	1	0	0	0	0	1	0	0	0	6108	1203	42	4	3429	4	FRMPD4	23	12736312	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	108352	12736312	142534248	1141	32405										
TLR8	0	genome.wustl.edu	37	chrX	12939570	12939570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	actggtagatgtcatttgtgCcagtcctggggatcaaagag	13	7	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	12939570	12939570	C	T	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.2411	p.A804V	0.034	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	276	0	0	168	67	28.51	-	-	-	T	12939570	C	T	12939570	3	4	281	1	0	0	0	0	1	0	0	0	16052	739	26	4	2417	4	TLR8	23	12939570	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	203258	12939570	142330990	1142	32406										
ASB11	0	genome.wustl.edu	37	chrX	15333633	15333633	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agaaatgggttaggagagccAaaaaaactttaattaaaagc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	15333633	15333633	A	-	DEL	ASB11	ENST00000480796	human	ensembl	69_37n	-1	known	frame_shift_del	c.95	p.L32fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192	172	0	0	97	22	18.18	-	-	-	-	15333633	A	-	15333633	7	5	281	1	0	1	0	1	0	0	0	0	1019	131	5	0	1026	0	ASB11	23	15333633	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	2394063	15333633	139936927	1143	32407										
ACE2	0	genome.wustl.edu	37	chrX	15584646	15584646	+	RNA	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aatgagaggatgtaattgtcAaaaaaaacattaatgctgcc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	15584646	15584646	A	-	DEL	ACE2	ENST00000473851	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234	278	1	0.36	228	61	20.96	-	-	-	-	15584646	A	-	15584646	6	5	281	0	1	1	0	1	0	0	0	0	137	145	5	0		0	ACE2	23	15584646	RNA	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	251013	15584646	139685914	1144	32408										
SYAP1	0	genome.wustl.edu	37	chrX	16753435	16753437	+	In_Frame_Del	DEL	AGA	AGA	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caaacaataaagaaatccgtAgaagaaggaaaaatagatgg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	16753435	16753437	AGA	-	DEL	SYAP1	ENST00000380155	human	ensembl	69_37n	1	known	in_frame_del	c.261_263	p.E89in_frame_del	0.994:1.000:1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895	165	0	0	94	49	34.03	-	-	-	-	16753437	AGA	-	16753435	7	5	281	1	0	1	0	1	0	0	0	0	15517	407	15	0	267	0	SYAP1	23	16753435	In_Frame_Del	DEL	AGA	TCGA-AN-A0AK-01A-21W-A019-09	1168789	16753435	138517125	1145	32409										
NHS	0	genome.wustl.edu	37	chrX	17746842	17746842	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctgaagcagagggtgtgttCgtgtctccaaacaaacctcg	12	10	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	17746842	17746842	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.4233	p.F1411	0.033	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	234	1	0.43	154	41	21.03	-	-	-	T	17746842	C	T	17746842	2	4	281	1	0	0	0	0	0	0	0	1	10483	883	31	1		1	NHS	23	17746842	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	993407	17746842	137523718	1146	32410										
RPS6KA3	0	genome.wustl.edu	37	chrX	20211692	20211694	+	In_Frame_Del	DEL	TCT	TCT	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cagccaagtagaatttgacaTcttcttctgtgaacatcacc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	20211692	20211694	TCT	-	DEL	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	in_frame_del	c.506_504	p.E168in_frame_del	1.000:1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	80	0	0	51	12	18.75	-	-	-	-	20211694	TCT	-	20211692	7	5	281	1	0	1	0	1	0	0	0	0	13738	1435	50	0	1780	0	RPS6KA3	23	20211692	In_Frame_Del	DEL	TCT	TCGA-AN-A0AK-01A-21W-A019-09	2464850	20211692	135058868	1147	32411										
DMD	0	genome.wustl.edu	37	chrX	31525513	31525513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggatctcaggattttttggcTgttttcatccaggttgtgat	11	6	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	31525513	31525513	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.8275	p.S2759G	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	68	0	0	54	18	25	-	-	-	C	31525513	T	C	31525513	3	2	281	1	0	0	0	0	1	0	0	0	4616	1580	55	5	2992	5	DMD	23	31525513	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	11313821	31525513	123745047	1148	32412										
DMD	0	genome.wustl.edu	37	chrX	31697691	31697691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtacttcatcccactgattcTgaattctttcaactagaata	4	10	4	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	31697691	31697691	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.7673	p.Q2558R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	97	0	0	80	27	25.23	-	-	-	C	31697691	T	C	31697691	3	2	281	1	0	0	0	0	1	0	0	0	4616	1580	55	5	3640	5	DMD	23	31697691	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	172178	31697691	123572869	1149	32413										
DMD	0	genome.wustl.edu	37	chrX	32456489	32456489	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgggttatcctctgaatgtcGcatcaaattttcaagtgact	8	8	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	32456489	32456489	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	nonsense	c.3940	p.R1314*	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	96	0	0	79	21	21	-	-	-	A	32456489	G	A	32456489	4	1	281	1	0	0	0	0	0	1	0	0	4616	1095	38	1	7564	1	DMD	23	32456489	Nonsense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	758798	32456489	122814071	1150	32414										
DMD	0	genome.wustl.edu	37	chrX	32482721	32482722	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctctgcactgtttcagctgcINSttttttagaatttctgaatc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	32482721	32482722	-	T	INS	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3258_3257	p.Q1087fs	0.990:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	340	0	0	158	129	44.95	-	-	-	T	32482722	-	T	32482721	7	5	281	1	0	1	1	0	0	0	0	0	4616	796	28	0	8266	0	DMD	23	32482721	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	26232	32482721	122787839	1151	32415										
DMD	0	genome.wustl.edu	37	chrX	33229446	33229446	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gcattttgaaaagtgtatatCaaggcagcgataaaaaaaac	8	5	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	33229446	33229446	C	G	SNP	DMD	ENST00000463609	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	DMD	HGNC	ENSG00000198947	45	0	0	30	5	14.29	-	-	-	G	33229446	C	G	33229446	1	3	281	0	1	0	0	0	0	0	0	0	4616	841	29	2		2	DMD	23	33229446	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	746725	33229446	122041114	1152	32416										
FAM47B	0	genome.wustl.edu	37	chrX	34961255	34961255	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	agctgctcaagaaagcggccCtattttccgagctctcgcca	9	14	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	34961255	34961255	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.307	p.L103I	0.273	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	157	0	0	122	30	19.61	-	-	-	A	34961255	C	A	34961255	3	1	281	1	0	0	0	0	1	0	0	0	5616	680	24	4	309	4	FAM47B	23	34961255	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1731809	34961255	120309305	1153	32417										
CXorf22	0	genome.wustl.edu	37	chrX	35989719	35989719	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	atagggagcgcatgtattcaTatgatgatacagacataggc	11	6	1	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	35989719	35989719	T	C	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.1987	p.Y663H	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	63	0	0	46	9	16.36	-	-	-	C	35989719	T	C	35989719	3	2	281	1	0	0	0	0	1	0	0	0	4133	1406	49	5	2033	5	CXorf22	23	35989719	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1028464	35989719	119280841	1154	32418										
PRRG1	0	genome.wustl.edu	37	chrX	37265483	37265483	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gaatcatcatccagggacgtGccagaaaccacaagaaaaca	8	11	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	37265483	37265483	G	A	SNP	PRRG1	ENST00000491253	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PRRG1	HGNC	ENSG00000130962	130	0	0	79	23	22.55	-	-	-	A	37265483	G	A	37265483	1	1	281	0	1	0	0	0	0	0	0	0	12685	1334	46	4		4	PRRG1	23	37265483	RNA	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1275764	37265483	118005077	1155	32419										
PRRG1	0	genome.wustl.edu	37	chrX	37312611	37312611	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accttaatattatcaccccaCcccccccaccagatgaagtg							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	37312611	37312611	C	-	DEL	PRRG1	ENST00000378628	human	ensembl	69_37n	1	known	frame_shift_del	c.394	p.P134fs	0.109	NULL	pfam_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962	207	1	0.48	165	58	25.66	-	-	-	-	37312611	C	-	37312611	7	5	281	1	0	1	0	1	0	0	0	0	12685	507	18	0	486	0	PRRG1	23	37312611	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	47128	37312611	117957949	1156	32420										
SRPX	0	genome.wustl.edu	37	chrX	38024061	38024061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgtgtctcttccttcgggtGtctcccaggacacccggact	10	15	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	38024061	38024061	G	A	SNP	SRPX	ENST00000378533	human	ensembl	69_37n	-1	known	missense	c.614	p.T205I	0.999	pfam_Hyalin,pfscan_Hyalin	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX	HGNC	ENSG00000101955	72	0	0	52	42	44.68	-	-	-	A	38024061	G	A	38024061	3	1	281	1	0	0	0	0	1	0	0	0	15255	1377	48	4	804	4	SRPX	23	38024061	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	711450	38024061	117246499	1157	32421										
BCOR	0	genome.wustl.edu	37	chrX	39923729	39923729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctgtgaggcatgtccgagGccacctggtctgcgggaggc	18	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	39923729	39923729	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3362	p.A1121V	0.040	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	46	0	0	16	10	37.04	-	-	-	A	39923729	G	A	39923729	3	1	281	1	0	0	0	0	1	0	0	0	1390	1203	42	4	1941	4	BCOR	23	39923729	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	1899668	39923729	115346831	1158	32422										
MED14	0	genome.wustl.edu	37	chrX	40571485	40571485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gtttctcatcagcaaagagcCtagactgcaccagttgatgg	10	10	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	40571485	40571485	C	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.842	p.R281M	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	391	0	0	199	68	25.47	-	-	-	A	40571485	C	A	40571485	3	1	281	1	0	0	0	0	1	0	0	0	9503	681	24	4	3622	4	MED14	23	40571485	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	647756	40571485	114699075	1159	32423										
RP2	0	genome.wustl.edu	37	chrX	46713150	46713150	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgcaagtgcacattagcctgCcaacaatttcgtgtgcgaga	10	10	0	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	46713150	46713150	C	T	SNP	RP2	ENST00000218340	human	ensembl	69_37n	1	known	silent	c.342	p.C114	1.000	pfam_Tubulin-bd_cofactor_C,smart_CARP_motif,pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218	253	0	0	156	18	10.34	-	-	-	T	46713150	C	T	46713150	2	4	281	1	0	0	0	0	0	0	0	1	13620	747	26	4		4	RP2	23	46713150	Silent	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	6141665	46713150	108557410	1160	32424										
UBA1	0	genome.wustl.edu	37	chrX	47066043	47066043	+	RNA	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ttttttcacttttattttgaTttttttttcaacacatagac							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	47066043	47066043	T	-	DEL	UBA1	ENST00000490869	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBA1	HGNC	ENSG00000130985	31	0	0	9	5	35.71	-	-	-	-	47066043	T	-	47066043	6	5	281	0	1	1	0	1	0	0	0	0	16924	1508	52	0		0	UBA1	23	47066043	RNA	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	352893	47066043	108204517	1161	32425										
ARAF	0	genome.wustl.edu	37	chrX	47426421	47426421	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	aggtagtgatggaaccccccGggggagccccagcccagcca							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	47426421	47426421	G	-	DEL	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	frame_shift_del	c.764	p.S257fs	0.192	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	38	0	0	14	5	23.81	-	-	-	-	47426421	G	-	47426421	7	5	281	1	0	1	0	1	0	0	0	0	839	1116	39	0	794	0	ARAF	23	47426421	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	360378	47426421	107844139	1162	32426										
TBC1D25	0	genome.wustl.edu	37	chrX	48419226	48419226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggctggattataatgagctgGccatgcactttgaccgcctt	11	10	0	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	48419226	48419226	G	A	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1930	p.A644T	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	77	0	0	31	25	44.64	-	-	-	A	48419226	G	A	48419226	3	1	281	1	0	0	0	0	1	0	0	0	15707	1203	42	4	1952	4	TBC1D25	23	48419226	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	992805	48419226	106851334	1163	32427										
KDM5C	0	genome.wustl.edu	37	chrX	53230805	53230805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctccttatgcacagctgccGccaggttcaggtctagcttc	9	14	3	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	53230805	53230805	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.1988	p.A663V	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	83	0	0	43	16	27.12	-	-	-	A	53230805	G	A	53230805	3	1	281	1	0	0	0	0	1	0	0	0	8188	1087	38	1	2844	1	KDM5C	23	53230805	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	4811579	53230805	102039755	1164	32428										
HUWE1	0	genome.wustl.edu	37	chrX	53675211	53675211	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caagagaagttgctcatcatTacaaactttgagtttgtcta	7	7	3	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	53675211	53675211	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.88	p.N30D	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	59	0	0	35	10	22.22	-	-	-	C	53675211	T	C	53675211	3	2	281	1	0	0	0	0	1	0	0	0	7515	1754	61	5	13356	5	HUWE1	23	53675211	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	444406	53675211	101595349	1165	32429										
SPIN2B	0	genome.wustl.edu	37	chrX	57146946	57146946	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cggggctgggatgaaggtcgGcctctctgcttcttttggga	16	9	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	57146946	57146946	G	A	SNP	SPIN2B	ENST00000275988	human	ensembl	69_37n	-1	known	silent	c.117	p.G39	0.523	NULL	pfam_Spin_Ssty	-	no_errors	SPIN2B	HGNC	ENSG00000186787	127	0	0	71	20	21.98	-	-	-	A	57146946	G	A	57146946	2	1	281	1	0	0	0	0	0	0	0	1	15145	1190	42	4		4	SPIN2B	23	57146946	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	3471735	57146946	98123614	1166	32430										
HEPH	0	genome.wustl.edu	37	chrX	65480089	65480090	+	Frame_Shift_Ins	INS	-	-	T													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	catggagaccctcttcactgINSttttttctcgaacaggtaag							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	65480089	65480090	-	T	INS	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	frame_shift_ins	c.3346_3347	p.S1118fs	1.000:1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	155	0	0	64	20	23.81	-	-	-	T	65480090	-	T	65480089	7	5	281	1	0	1	1	0	0	0	0	0	7105	1377	48	0	3420	0	HEPH	23	65480089	Frame_Shift_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	8333143	65480089	89790471	1167	32431										
NLGN3	0	genome.wustl.edu	37	chrX	70389735	70389735	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	accacgagtgtgaggccggtCccccccatgacacgctgcgc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	70389735	70389735	C	-	DEL	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	frame_shift_del	c.2335	p.H781fs	0.347	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	34	0	0	13	4	23.53	-	-	-	-	70389735	C	-	70389735	7	5	281	1	0	1	0	1	0	0	0	0	10535	855	30	0	2361	0	NLGN3	23	70389735	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	4909646	70389735	84880825	1168	32432										
ZMYM3	0	genome.wustl.edu	37	chrX	70467388	70467388	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tgtcaaaaggatggtcagacCtgcctccctaaaatgcgttg	10	10	2	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	70467388	70467388	C	A	SNP	ZMYM3	ENST00000489332	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMYM3	HGNC	ENSG00000147130	76	0	0	20	4	16.67	-	-	-	A	70467388	C	A	70467388	1	1	281	0	1	0	0	0	0	0	0	0	17797	696	24	4		4	ZMYM3	23	70467388	RNA	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	77653	70467388	84803172	1169	32433										
ZMYM3	0	genome.wustl.edu	37	chrX	70472854	70472854	+	Frame_Shift_Del	DEL	C	C	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gagggggctttatagagcagCccccccagccccagcaactc							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	70472854	70472854	C	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.252	p.L85fs	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	35	0	0	11	5	31.25	-	-	-	-	70472854	C	-	70472854	7	5	281	1	0	1	0	1	0	0	0	0	17797	726	26	0	3974	0	ZMYM3	23	70472854	Frame_Shift_Del	DEL	C	TCGA-AN-A0AK-01A-21W-A019-09	5466	70472854	84797706	1170	32434										
SLC16A2	0	genome.wustl.edu	37	chrX	73744262	73744262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgttccttcgcctttcagcCatccctcgtcatcctgggcc	7	18	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	73744262	73744262	C	T	SNP	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	missense	c.866	p.P289L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	79	0	0	25	21	45.65	-	-	-	T	73744262	C	T	73744262	3	4	281	1	0	0	0	0	1	0	0	0	14497	594	21	4	876	4	SLC16A2	23	73744262	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	3271408	73744262	81526298	1171	32435										
KIAA2022	0	genome.wustl.edu	37	chrX	73962127	73962127	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tcattctttaaattagccttTgaggattggttttccaagag	8	6	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	73962127	73962127	T	C	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.2265	p.S755	0.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	533	0	0	240	112	31.73	-	-	-	C	73962127	T	C	73962127	2	2	281	1	0	0	0	0	0	0	0	1	8321	1799	63	5		5	KIAA2022	23	73962127	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	217865	73962127	81308433	1172	32436										
HDX	0	genome.wustl.edu	37	chrX	83591867	83591867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatgagcccttgcatcattcGgaacaacttcattgggctct	8	11	3	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	83591867	83591867	G	A	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.1682	p.P561L	0.999	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	39	0	0	23	8	25.81	-	-	-	A	83591867	G	A	83591867	3	1	281	1	0	0	0	0	1	0	0	0	7077	1116	39	1	406	1	HDX	23	83591867	Missense_Mutation	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	9629740	83591867	71678693	1173	32437										
ARMCX1	0	genome.wustl.edu	37	chrX	100808397	100808397	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccaggagtggatctagggccGggggcagggcaagtggaaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	100808397	100808397	G	-	DEL	ARMCX1	ENST00000372829	human	ensembl	69_37n	1	known	frame_shift_del	c.484	p.G163fs	0.051	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	251	0	0	132	58	29.74	-	-	-	-	100808397	G	-	100808397	7	5	281	1	0	1	0	1	0	0	0	0	963	1116	39	0	486	0	ARMCX1	23	100808397	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	17216530	100808397	54462163	1174	32438										
TMSB15A	0	genome.wustl.edu	37	chrX	101770012	101770012	+	Frame_Shift_Del	DEL	T	T	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tttcctttgagggaagagtaTttttttcttcagtattagtt							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	101770012	101770012	T	-	DEL	TMSB15A	ENST00000289373	human	ensembl	69_37n	-1	known	frame_shift_del	c.80	p.N27fs	0.981	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	-	no_errors	TMSB15A	HGNC	ENSG00000158164	386	1	0.26	200	81	28.42	-	-	-	-	101770012	T	-	101770012	7	5	281	1	0	1	0	1	0	0	0	0	16350	1493	52	0	65	0	TMSB15A	23	101770012	Frame_Shift_Del	DEL	T	TCGA-AN-A0AK-01A-21W-A019-09	961615	101770012	53500548	1175	32439										
DOCK11	0	genome.wustl.edu	37	chrX	117700116	117700116	+	Frame_Shift_Del	DEL	A	A	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caccgacagtttagttcaagAaaaaaaggagacggtagaaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	117700116	117700116	A	-	DEL	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	frame_shift_del	c.842	p.K283fs	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	305	0	0	157	31	16.15	-	-	-	-	117700116	A	-	117700116	7	5	281	1	0	1	0	1	0	0	0	0	4721	246	9	0	872	0	DOCK11	23	117700116	Frame_Shift_Del	DEL	A	TCGA-AN-A0AK-01A-21W-A019-09	15930104	117700116	37570444	1176	32440										
RNF113A	0	genome.wustl.edu	37	chrX	119005376	119005376	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccactgtcacgggtcttctgTatcattggattgtgggtcac	11	10	5	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	119005376	119005376	T	C	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.201	p.I67M	0.977	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	172	0	0	89	39	30.47	-	-	-	C	119005376	T	C	119005376	3	2	281	1	0	0	0	0	1	0	0	0	13513	1628	57	5	834	5	RNF113A	23	119005376	Missense_Mutation	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	1305260	119005376	36265184	1177	32441										
RHOXF2B	0	genome.wustl.edu	37	chrX	119211023	119211023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	gctctggtcgctgtcctcaaCgttgccatcgctgccgctgg	12	15	2	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	119211023	119211023	C	T	SNP	RHOXF2B	ENST00000371402	human	ensembl	69_37n	-1	known	missense	c.310	p.V104I	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2B	HGNC	ENSG00000203989	40	0	0	21	11	34.38	-	-	-	T	119211023	C	T	119211023	3	4	281	1	0	0	0	0	1	0	0	0	13433	536	19	1	568	1	RHOXF2B	23	119211023	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	205647	119211023	36059537	1178	32442										
UTP14A	0	genome.wustl.edu	37	chrX	129053403	129053403	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgagcagagcttcagagggcTcgggctctgcagtcctacta	13	12	2	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	129053403	129053403	T	C	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	silent	c.690	p.A230	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	131	0	0	55	19	25.68	-	-	-	C	129053403	T	C	129053403	2	2	281	1	0	0	0	0	0	0	0	1	17192	1538	54	5		5	UTP14A	23	129053403	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	9842380	129053403	26217157	1179	32443										
BCORL1	0	genome.wustl.edu	37	chrX	129158975	129158975	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ccatccacaggaagcatctgTagctcctttgctggcatggc	10	13	1	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	129158975	129158975	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	silent	c.3699	p.C1233	0.967	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	247	0	0	113	53	31.93	-	-	-	C	129158975	T	C	129158975	2	2	281	1	0	0	0	0	0	0	0	1	1391	1644	57	5		5	BCORL1	23	129158975	Silent	SNP	T	TCGA-AN-A0AK-01A-21W-A019-09	105572	129158975	26111585	1180	32444										
SLC25A14	0	genome.wustl.edu	37	chrX	129480618	129480618	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tatagagggatgttccatgcGctgtttcgcatctgtaaaga	11	7	1	2			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	129480618	129480618	G	A	SNP	SLC25A14	ENST00000339231	human	ensembl	69_37n	1	known	silent	c.261	p.A87	0.158	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A14	HGNC	ENSG00000102078	318	0	0	142	66	31.73	-	-	-	A	129480618	G	A	129480618	2	1	281	1	0	0	0	0	0	0	0	1	14565	1074	38	1		1	SLC25A14	23	129480618	Silent	SNP	G	TCGA-AN-A0AK-01A-21W-A019-09	321643	129480618	25789942	1181	32445										
FGF13	0	genome.wustl.edu	37	chrX	137939823	137939823	+	Frame_Shift_Del	DEL	G	G	-													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	taatgtattcctgtgtgccaGggggggcgtcatccagaact							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	137939823	137939823	G	-	DEL	FGF13	ENST00000370603	human	ensembl	69_37n	-1	known	frame_shift_del	c.68	p.P23fs	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	210	0	0	94	40	29.2	-	-	-	-	137939823	G	-	137939823	7	5	281	1	0	1	0	1	0	0	0	0	5888	1000	35	0	942	0	FGF13	23	137939823	Frame_Shift_Del	DEL	G	TCGA-AN-A0AK-01A-21W-A019-09	8459205	137939823	17330737	1182	32446										
MAMLD1	0	genome.wustl.edu	37	chrX	149639040	149639040	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	cgtccagcagcaatgctgccCtggggcccgccatgccctat	11	17	0	0			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	149639040	149639040	C	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	missense	c.1120	p.L374M	0.001	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	177	0	0	95	36	27.27	-	-	-	A	149639040	C	A	149639040	3	1	281	1	0	0	0	0	1	0	0	0	9279	680	24	4	1205	4	MAMLD1	23	149639040	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	11699217	149639040	5631520	1183	32447										
ZNF185	0	genome.wustl.edu	37	chrX	152132427	152132427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ggtcactgttactgtcactgCcacatctgagcagcctcaca	8	14	4	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	152132427	152132427	C	T	SNP	ZNF185	ENST00000535861	human	ensembl	69_37n	1	known	missense	c.1745	p.A582V	0.001	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394	145	0	0	55	20	26.67	-	-	-	T	152132427	C	T	152132427	3	4	281	1	0	0	0	0	1	0	0	0	17848	739	26	4	1963	4	ZNF185	23	152132427	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	2493387	152132427	3138133	1184	32448										
MECP2	0	genome.wustl.edu	37	chrX	153296881	153296881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	caatcaactccactttagagCgaaaggcttttccctgggga	9	11	1	1			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	153296881	153296881	C	T	SNP	MECP2	ENST00000303391	human	ensembl	69_37n	-1	known	missense	c.398	p.R133H	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057	142	0	0	58	20	25.64	-	-	-	T	153296881	C	T	153296881	3	4	281	1	0	0	0	0	1	0	0	0	9494	768	27	1	1066	1	MECP2	23	153296881	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	1164454	153296881	1973679	1185	32449										
DKC1	0	genome.wustl.edu	37	chrX	154005088	154005089	+	In_Frame_Ins	INS	-	-	AAG													0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	tctaggacagtgataccaccINSaagaagaagaagaagaagaa							TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	154005088	154005089	-	AAG	INS	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	in_frame_ins	c.1491_1492	p.501in_frame_insK	0.114:0.284	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	72	0	0	17	8	32	-	-	-	AAG	154005089	-	AAG	154005088	7	5	281	1	0	1	1	0	0	0	0	0	4578	581	21	0	1549	0	DKC1	23	154005088	In_Frame_Ins	INS	-	TCGA-AN-A0AK-01A-21W-A019-09	708207	154005088	1265472	1186	32450										
F8A1	0	genome.wustl.edu	37	chrX	154115715	154115715	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0185654008438819	22	1	0.298362204724409	2.03428775948461	0.226031973276068	0.0223322441158728	0.242963745170275	0	ctgctgagcagaaccacctcCttcacctcgttctgcaagaa	7	15	2	3			TCGA-AN-A0AK-01A-21W-A019-09	TCGA-AN-A0AK-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30870af5-e46e-47c6-b7fb-af6f4c91861e	9243b0f3-5c29-4922-902c-8348cd53537c	X	154115715	154115715	C	A	SNP	F8A1	ENST00000369446	human	ensembl	69_37n	1	known	missense	c.1066	p.L356I	0.999	NULL	NULL	-	no_errors	F8A1	HGNC	ENSG00000197932	270	0	0	56	9	13.85	-	-	-	A	154115715	C	A	154115715	3	1	281	1	0	0	0	0	1	0	0	0	5388	681	24	4		4	F8A1	23	154115715	Missense_Mutation	SNP	C	TCGA-AN-A0AK-01A-21W-A019-09	110627	154115715	1154845	1187	32451										
MIIP	0	genome.wustl.edu	37	chr1	12081867	12081867	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tgggtggggcaggatgctgtGcggcggtcagtggccagggc	22	8	1	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	12081867	12081867	G	A	SNP	MIIP	ENST00000235332	human	ensembl	69_37n	1	known	silent	c.84	p.V28	0.448	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691	8	0	0	3	6	66.67	-	-	-	A	12081867	G	A	12081867	2	1	282	1	0	0	0	0	0	0	0	1	9656	1306	46	4		4	MIIP	1	12081867	Silent	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		12081867	237168754	1	32452										
RCC1	0	genome.wustl.edu	37	chr1	28856409	28856410	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcgcatagctaaaagaaggtINScccccccagcagatgccatc							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	28856409	28856410	-	C	INS	RCC1	ENST00000373831	human	ensembl	69_37n	1	known	frame_shift_ins	c.31_32	p.A14fs	0.985:0.987	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198	22	0	0	7	2	22.22	-	-	-	C	28856410	-	C	28856409	7	5	282	1	0	1	1	0	0	0	0	0	13256	1667	58	0	33	0	RCC1	1	28856409	Frame_Shift_Ins	INS	-	TCGA-AN-A0AL-01A-11W-A019-09	16774542	28856409	220394212	2	32453										
USP1	0	genome.wustl.edu	37	chr1	62910521	62910521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tcctaaaaaaagaagaagtaAaaaatgtggcagaattacct	7	5	0	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	62910521	62910521	A	G	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	missense	c.670	p.K224E	0.954	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	98	0	0	83	38	31.4	-	-	-	G	62910521	A	G	62910521	3	3	282	1	0	0	0	0	1	0	0	0	17137	15	1	5	688	5	USP1	1	62910521	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	34054112	62910521	186340100	3	32454										
NBPF9	0	genome.wustl.edu	37	chr1	144827878	144827879	+	In_Frame_Ins	INS	-	-	AGG													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gaagatcaaagaaggaaagaINSagaaggggaagaaaagaagg							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	144827878	144827879	-	AGG	INS	NBPF9	ENST00000375552	human	ensembl	69_37n	1	known	in_frame_ins	c.1757_1758	p.587in_frame_insG	0.025:0.025	NULL	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF9	HGNC	ENSG00000168614	11	0	0	28	7	20	-	-	-	AGG	144827879	-	AGG	144827878	7	5	282	1	0	1	1	0	0	0	0	0	10271	243	9	0	2607	0	NBPF9	1	144827878	In_Frame_Ins	INS	-	TCGA-AN-A0AL-01A-11W-A019-09	81917357	144827878	104422743	4	32455										
HIST2H3D	0	genome.wustl.edu	37	chr1	149784867	149784867	+	Missense_Mutation	SNP	C	C	A													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcggcgggccaactggatgtCcttgggcatgatggtcacgc							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	149784867	149784867	C	A	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	missense	c.370	p.D124Y	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	54	0	0	29	9	23.68	-	-	-	A	149784867	C	A	149784867	3	1	282	1	0	0	0	0	1	0	0	0	7232	855	30	2	42	2	HIST2H3D	1	149784867	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	4956989	149784867	99465754	5	32456	258	2								
HIST2H3D	0	genome.wustl.edu	37	chr1	149784868	149784868	+	Missense_Mutation	SNP	C	C	A													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cggcgggccaactggatgtcCttgggcatgatggtcacgcg							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	149784868	149784868	C	A	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	missense	c.369	p.K123N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	57	0	0	29	9	23.68	-	-	-	A	149784868	C	A	149784868	3	1	282	1	0	0	0	0	1	0	0	0	7232	680	24	4	43	4	HIST2H3D	1	149784868	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	1	149784868	99465753	6	32457	258	2								
TCHH	0	genome.wustl.edu	37	chr1	152084837	152084837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	ctcctggcgctccctcctcaGctcttgccgctccagcttcc	7	21	2	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	152084837	152084837	G	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.856	p.L286M	0.011	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	115	0	0	47	41	46.59	-	-	-	T	152084837	G	T	152084837	3	4	282	1	0	0	0	0	1	0	0	0	15795	962	34	4	4979	4	TCHH	1	152084837	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	2299969	152084837	97165784	7	32458										
HRNR	0	genome.wustl.edu	37	chr1	152185557	152185557	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	atttatgtttattattcactGataaaagtagcacctctgct	5	7	2	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	152185557	152185557	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	nonsense	c.8548	p.Q2850*	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	75	0	0	39	16	29.09	-	-	-	A	152185557	G	A	152185557	4	1	282	1	0	0	0	0	0	1	0	0	7410	1299	45	2	8	2	HRNR	1	152185557	Nonsense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	100720	152185557	97065064	8	32459										
SELE	0	genome.wustl.edu	37	chr1	169702097	169702097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cataagtcatagcttccgtgGaggtgttgtaagaccaggct	12	8	1	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	169702097	169702097	G	C	SNP	SELE	ENST00000333360	human	ensembl	69_37n	-1	known	missense	c.80	p.S27C	0.843	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908	129	0	0	130	28	17.72	-	-	-	C	169702097	G	C	169702097	3	2	282	1	0	0	0	0	1	0	0	0	14101	1174	41	2	1796	2	SELE	1	169702097	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	17516540	169702097	79548524	9	32460										
NCF2	0	genome.wustl.edu	37	chr1	183556064	183556064	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gtagagcatccctcgttggaAgtaagccactgccaagtgct	11	11	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	183556064	183556064	A	C	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	missense	c.223	p.F75V	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	323	0	0	299	78	20.69	-	-	-	C	183556064	A	C	183556064	3	2	282	1	0	0	0	0	1	0	0	0	10289	72	3	5	1413	5	NCF2	1	183556064	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	13853967	183556064	65694557	10	32461										
RGS1	0	genome.wustl.edu	37	chr1	192548335	192548335	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcaccaacccccacgtgtttTgatgaagcacaaaaagtcat	7	12	1	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	192548335	192548335	T	G	SNP	RGS1	ENST00000367459	human	ensembl	69_37n	1	known	missense	c.513	p.F171L	0.998	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS1	HGNC	ENSG00000090104	368	0	0	437	61	12.25	-	-	-	G	192548335	T	G	192548335	3	3	282	1	0	0	0	0	1	0	0	0	13376	1809	63	5	531	5	RGS1	1	192548335	Missense_Mutation	SNP	T	TCGA-AN-A0AL-01A-11W-A019-09	8992271	192548335	56702286	11	32462										
KCNT2	0	genome.wustl.edu	37	chr1	196227573	196227573	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gctgcggtggtgcccttgttCtttggagtctttggtgtctt	14	8	3	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	1	196227573	196227573	C	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	nonsense	c.2962	p.E988*	0.999	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	223	0	0	213	86	28.76	-	-	-	A	196227573	C	A	196227573	4	1	282	1	0	0	0	0	0	1	0	0	8146	922	32	2	457	2	KCNT2	1	196227573	Nonsense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	3679238	196227573	53023048	12	32463										
CYP26B1	0	genome.wustl.edu	37	chr2	72359509	72359509	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cgtgtggccagctcaaagcgGctggtgctagccagctccac	13	14	1	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	2	72359509	72359509	G	C	SNP	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	missense	c.1386	p.S462R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	19	0	0	7	5	41.67	-	-	-	C	72359509	G	C	72359509	3	2	282	1	0	0	0	0	1	0	0	0	4187	1194	42	4	156	4	CYP26B1	2	72359509	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		72359509	170839864	13	32464										
TTN	0	genome.wustl.edu	37	chr2	179640141	179640141	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gctatgttgatggcttttacCatgatgctggcagagtcctc	11	9	0	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	2	179640141	179640141	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6450	p.M2150I	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	221	1	0.45	258	76	22.69	-	-	-	A	179640141	C	A	179640141	3	1	282	1	0	0	0	0	1	0	0	0	16832	594	21	4	104878	4	TTN	2	179640141	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	107280632	179640141	63559232	14	32465										
ACY1	0	genome.wustl.edu	37	chr3	52023054	52023054	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	atatacacgcctgctgcctgCccttgccagtgtgcctgccc							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	3	52023054	52023054	C	-	DEL	ACY1	ENST00000458031	human	ensembl	69_37n	1	known	frame_shift_del	c.1460	p.A489fs	0.996	tigrfam_N-acyl_aa_amidohydrolase	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,tigrfam_N-acyl_aa_amidohydrolase	-	no_errors	ACY1	HGNC	ENSG00000243989	52	0	0	13	2	13.33	-	-	-	-	52023054	C	-	52023054	7	5	282	1	0	1	0	1	0	0	0	0	226	739	26	0	1244	0	ACY1	3	52023054	Frame_Shift_Del	DEL	C	TCGA-AN-A0AL-01A-11W-A019-09		52023054	145999376	15	32466										
ZNF718	0	genome.wustl.edu	37	chr4	155760	155760	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cctacatatgtaaacaatgtGgcaaagcctttaaacagtcc	6	10	0	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	4	155760	155760	G	A	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	139	0	0	29	66	69.47	-	-	-	A	155760	G	A	155760	1	1	282	0	1	0	0	0	0	0	0	0	18216	1348	47	4		4	ZNF718	4	155760	RNA	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		155760	190998516	16	32467										
ADH1C	0	genome.wustl.edu	37	chr4	100266200	100266200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tcccgctgcaggtgaacctcCtggtgccatcctgcagggtc	12	15	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	4	100266200	100266200	C	T	SNP	ADH1C	ENST00000515683	human	ensembl	69_37n	-1	known	missense	c.386	p.R129K	0.000	NULL	NULL	-	pseudogene	ADH1C	HGNC	ENSG00000248144	93	0	0	97	30	23.62	-	-	-	T	100266200	C	T	100266200	3	4	282	1	0	0	0	0	1	0	0	0	309	681	24	4	761	4	ADH1C	4	100266200	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	100110440	100266200	90888076	17	32468										
CARD6	0	genome.wustl.edu	37	chr5	40843565	40843565	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	catatataaaagatggacagAgatatgaggagctagatgat	11	3	0	5			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	40843565	40843565	A	G	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	missense	c.595	p.R199G	0.793	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	149	0	0	137	61	30.81	-	-	-	G	40843565	A	G	40843565	3	3	282	1	0	0	0	0	1	0	0	0	2675	296	11	5	601	5	CARD6	5	40843565	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09		40843565	140071695	18	32469										
AFF4	0	genome.wustl.edu	37	chr5	132228739	132228739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tactctctgttgctggatggCttatggcctgctgaattctt	10	9	2	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	132228739	132228739	C	T	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	silent	c.2379	p.K793	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	391	1	0.25	109	150	57.92	-	-	-	T	132228739	C	T	132228739	2	4	282	1	0	0	0	0	0	0	0	1	359	796	28	4		4	AFF4	5	132228739	Silent	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	91385174	132228739	48686521	19	32470										
LECT2	0	genome.wustl.edu	37	chr5	135286901	135286901	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcaccccaggtgtagactccAcctctcttacctcttccaga	6	17	2	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	135286901	135286901	A	G	SNP	LECT2	ENST00000514447	human	ensembl	69_37n	-1	putative	silent	c.300	p.G100	0.036	NULL	NULL	-	no_errors	LECT2	HGNC	ENSG00000145826	170	0	0	52	54	50.94	-	-	-	G	135286901	A	G	135286901	2	3	282	1	0	0	0	0	0	0	0	1	8767	174	6	5		5	LECT2	5	135286901	Silent	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	3058162	135286901	45628359	20	32471										
PCDHAC1	0	genome.wustl.edu	37	chr5	140306692	140306692	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cttcggggtggatctacccaGcggcaatttggtggtcagag							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	140306692	140306692	G	-	DEL	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	frame_shift_del	c.215	p.S72fs	0.809	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	60	0	0	7	7	50	-	-	-	-	140306692	G	-	140306692	7	5	282	1	0	1	0	1	0	0	0	0	11605	971	34	0	217	0	PCDHAC1	5	140306692	Frame_Shift_Del	DEL	G	TCGA-AN-A0AL-01A-11W-A019-09	5019791	140306692	40608568	21	32472										
PCDHGB4	0	genome.wustl.edu	37	chr5	140768682	140768682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cagatgctgttctagaccgcGagcagaatccagagtacaat	10	10	1	4			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	140768682	140768682	G	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	nonsense	c.1231	p.E411*	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	205	0	0	36	24	40	-	-	-	T	140768682	G	T	140768682	4	4	282	1	0	0	0	0	0	1	0	0	11638	1059	37	3	1233	3	PCDHGB4	5	140768682	Nonsense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	461990	140768682	40146578	22	32473										
ITK	0	genome.wustl.edu	37	chr5	156635917	156635917	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cagaagaagcgcacgctgaaGgggtccattgagctctcccg	13	12	1	4			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	156635917	156635917	G	A	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	silent	c.156	p.K52	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	117	0	0	22	34	60.71	-	-	-	A	156635917	G	A	156635917	2	1	282	1	0	0	0	0	0	0	0	1	7963	991	35	4		4	ITK	5	156635917	Silent	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	15867235	156635917	24279343	23	32474										
SLIT3	0	genome.wustl.edu	37	chr5	168112908	168112909	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tctgcagtaggaccatgggtINSggggggtgttcacagaaggg							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	5	168112908	168112909	-	G	INS	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3339_3338	p.P1114fs	0.135:0.999	NULL	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	36	0	0	20	3	13.04	-	-	-	G	168112909	-	G	168112908	7	5	282	1	0	1	1	0	0	0	0	0	14830	1683	59	0	1256	0	SLIT3	5	168112908	Frame_Shift_Ins	INS	-	TCGA-AN-A0AL-01A-11W-A019-09	11476991	168112908	12802352	24	32475										
MCM3	0	genome.wustl.edu	37	chr6	52129521	52129521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gattctgtgaggcgattcatGccgattgactgcgcatgagc	13	9	2	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	6	52129521	52129521	G	T	SNP	MCM3	ENST00000421471	human	ensembl	69_37n	-1	known	missense	c.928	p.H310N	0.987	NULL	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	-	no_start_codon	MCM3	HGNC	ENSG00000112118	352	0	0	310	106	25.48	-	-	-	T	52129521	G	T	52129521	3	4	282	1	0	0	0	0	1	0	0	0	9458	1306	46	4	138	4	MCM3	6	52129521	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		52129521	118985546	25	32476										
KIAA1586	0	genome.wustl.edu	37	chr6	56919137	56919137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tagacaatataattcagcacAtgaacctacgccttttatct	4	10	2	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	6	56919137	56919137	A	C	SNP	KIAA1586	ENST00000370733	human	ensembl	69_37n	1	known	missense	c.1840	p.M614L	0.004	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116	151	0	0	128	35	21.47	-	-	-	C	56919137	A	C	56919137	3	2	282	1	0	0	0	0	1	0	0	0	8297	217	8	5	1854	5	KIAA1586	6	56919137	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	4789616	56919137	114195930	26	32477										
COL19A1	0	genome.wustl.edu	37	chr6	70637830	70637830	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tcccaaaggccttcctgaggAgtactcagtagctgccatgt	10	12	1	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	6	70637830	70637830	A	T	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.296	p.E99V	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	273	0	0	249	145	36.8	-	-	-	T	70637830	A	T	70637830	3	4	282	1	0	0	0	0	1	0	0	0	3706	304	11	5	310	5	COL19A1	6	70637830	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	13718693	70637830	100477237	27	32478										
AKD1	0	genome.wustl.edu	37	chr6	109827530	109827530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cttaaaaagtgctatcttacCtgcttttattctttccaggt	5	9	2	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	6	109827530	109827530	C	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.4849	p.G1617R	1.000	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	188	0	0	55	44	44.44	-	-	-	G	109827530	C	G	109827530	3	3	282	1	0	0	0	0	1	0	0	0	460	695	24	4	914	4	AKD1	6	109827530	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	39189700	109827530	61287537	28	32479										
PTPRN2	0	genome.wustl.edu	37	chr7	157370811	157370811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tgtcagcatgacgatcaccaCgcagccgctctcccacacca	7	18	3	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	7	157370811	157370811	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	missense	c.2587	p.V863M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	36	0	0	7	13	65	-	-	-	T	157370811	C	T	157370811	3	4	282	1	0	0	0	0	1	0	0	0	12891	536	19	1	553	1	PTPRN2	7	157370811	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		157370811	1767852	29	32480										
FZD3	0	genome.wustl.edu	37	chr8	28409124	28409124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	ctttctgttcttccaggttaCtcaaatgagtcgtccagact	7	11	3	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	8	28409124	28409124	C	T	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	1	known	missense	c.1409	p.T470I	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	130	1	0.76	119	49	29.17	-	-	-	T	28409124	C	T	28409124	3	4	282	1	0	0	0	0	1	0	0	0	6180	565	20	4	1423	4	FZD3	8	28409124	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		28409124	117954898	30	32481										
KIF24	0	genome.wustl.edu	37	chr9	34255843	34255843	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cttgagatcggcctgggtttGagccatgtgacattttcact	11	9	1	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	9	34255843	34255843	G	T	SNP	KIF24	ENST00000443226	human	ensembl	69_37n	-1	putative	missense	c.616	p.Q206K	0.980	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF24	HGNC	ENSG00000186638	73	0	0	52	22	29.73	-	-	-	T	34255843	G	T	34255843	3	4	282	1	0	0	0	0	1	0	0	0	8344	1277	45	2	356	2	KIF24	9	34255843	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		34255843	106957588	31	32482										
ALG2	0	genome.wustl.edu	37	chr9	101980329	101980329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	catggtggcttttaaggaagGttcacggatgaacttttcta	11	6	2	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	9	101980329	101980329	G	A	SNP	ALG2	ENST00000476832	human	ensembl	69_37n	-1	known	missense	c.1138	p.P380S	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523	127	0	0	20	62	75.61	-	-	-	A	101980329	G	A	101980329	3	1	282	1	0	0	0	0	1	0	0	0	519	1261	44	4	116	4	ALG2	9	101980329	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	67724486	101980329	39233102	32	32483										
GOLGA1	0	genome.wustl.edu	37	chr9	127700866	127700866	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	aggtacttacaaagtcatctCctgagtcagctcccattgag	8	11	3	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	9	127700866	127700866	C	G	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	missense	c.125	p.G42A	1.000	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	159	0	0	77	23	23	-	-	-	G	127700866	C	G	127700866	3	3	282	1	0	0	0	0	1	0	0	0	6603	855	30	2	2262	2	GOLGA1	9	127700866	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	25720537	127700866	13512565	33	32484										
ODF2	0	genome.wustl.edu	37	chr9	131246284	131246284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcgtgggcatttgcaggcacAgcttcggtccaaagaggctg	15	10	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	9	131246284	131246284	A	G	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.1055	p.Q352R	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	113	1	0.88	33	52	61.18	-	-	-	G	131246284	A	G	131246284	3	3	282	1	0	0	0	0	1	0	0	0	10900	188	7	5	1148	5	ODF2	9	131246284	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	3545418	131246284	9967147	34	32485										
GBGT1	0	genome.wustl.edu	37	chr9	136029012	136029012	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tccagtgtagaaaagcggatCagcttcaggctgggtggctg							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	9	136029012	136029012	C	-	DEL	GBGT1	ENST00000372040	human	ensembl	69_37n	-1	known	frame_shift_del	c.996	p.I333fs	1.000	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GBGT1	HGNC	ENSG00000148288	25	0	0	9	7	41.18	-	-	-	-	136029012	C	-	136029012	7	5	282	1	0	1	0	1	0	0	0	0	6322	813	29	0	51	0	GBGT1	9	136029012	Frame_Shift_Del	DEL	C	TCGA-AN-A0AL-01A-11W-A019-09	4782728	136029012	5184419	35	32486										
RASGEF1A	0	genome.wustl.edu	37	chr10	43697381	43697381	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cacgatcttggctgagaaagActtcagcttggcctggggca							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	10	43697381	43697381	A	-	DEL	RASGEF1A	ENST00000395809	human	ensembl	69_37n	-1	known	frame_shift_del	c.334	p.S112fs	0.986	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915	10	0	0	4	2	33.33	-	-	-	-	43697381	A	-	43697381	7	5	282	1	0	1	0	1	0	0	0	0	13152	275	10	0	1151	0	RASGEF1A	10	43697381	Frame_Shift_Del	DEL	A	TCGA-AN-A0AL-01A-11W-A019-09		43697381	91837366	36	32487										
DNA2	0	genome.wustl.edu	37	chr10	70231738	70231738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	acctcgcgcgcatgcgccaaCccgcagatgtcccaaatgac	9	17	0	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	10	70231738	70231738	C	T	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.142	p.V48I	0.000	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	31	0	0	7	9	56.25	-	-	-	T	70231738	C	T	70231738	3	4	282	1	0	0	0	0	1	0	0	0	4632	507	18	4	3382	4	DNA2	10	70231738	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	26534357	70231738	65303009	37	32488										
HSPA12A	0	genome.wustl.edu	37	chr10	118439273	118439273	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	taaagatccatagggtccgcCtgaattgagaacaaaaaggg	11	7	0	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	10	118439273	118439273	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	splice_site	c.1028-1	e10-1	1.000	-	-	-	no_errors	HSPA12A	HGNC	ENSG00000165868	143	0	0	108	51	32.08	-	-	-	T	118439273	C	T	118439273	5	4	282	1	0	0	0	0	0	0	1	0	7457	695	24	4	1012	4	HSPA12A	10	118439273	Splice_Site	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	48207535	118439273	17095474	38	32489										
MUC5B	0	genome.wustl.edu	37	chr11	1270826	1270826	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	ggccaccagctctacggccaTgccctcctccactccgggga	10	19	1	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	1270826	1270826	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.12725	p.M4242T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	8	0	0	0	3	100	-	-	-	C	1270826	T	C	1270826	3	2	282	1	0	0	0	0	1	0	0	0	10051	1464	51	5	12847	5	MUC5B	11	1270826	Missense_Mutation	SNP	T	TCGA-AN-A0AL-01A-11W-A019-09		1270826	133735690	39	32490										
OR52K2	0	genome.wustl.edu	37	chr11	4471319	4471319	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gtctctcatataggtgccatCttagccttctacacaactgt	6	12	4	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	4471319	4471319	C	G	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	missense	c.750	p.I250M	0.678	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	2295	0	0	517	391	42.97	-	-	-	G	4471319	C	G	4471319	3	3	282	1	0	0	0	0	1	0	0	0	11197	903	32	2	752	2	OR52K2	11	4471319	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	3200493	4471319	130535197	40	32491										
OR4X1	0	genome.wustl.edu	37	chr11	48286093	48286093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cacttcctgagaagccacaaCttggaggggcagcacaaggc	12	12	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	48286093	48286093	C	T	SNP	OR4X1	ENST00000320048	human	ensembl	69_37n	1	known	silent	c.681	p.N227	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567	235	0	0	138	83	37.56	-	-	-	T	48286093	C	T	48286093	2	4	282	1	0	0	0	0	0	0	0	1	11157	564	20	4		4	OR4X1	11	48286093	Silent	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	43814774	48286093	86720423	41	32492										
SF1	0	genome.wustl.edu	37	chr11	64536769	64536769	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	atcttccgtagatcattctgGtcctctggagtctcgatacc	8	12	5	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	64536769	64536769	G	C	SNP	SF1	ENST00000377390	human	ensembl	69_37n	-1	known	missense	c.705	p.D235E	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	86	0	0	72	28	28	-	-	-	C	64536769	G	C	64536769	3	2	282	1	0	0	0	0	1	0	0	0	14233	1252	44	4	1380	4	SF1	11	64536769	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	16250676	64536769	70469747	42	32493										
SNX32	0	genome.wustl.edu	37	chr11	65617722	65617722	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	actcgggaagagtttgccaaGatgaagcaggagctggaagc	15	7	0	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	65617722	65617722	G	C	SNP	SNX32	ENST00000308342	human	ensembl	69_37n	1	known	missense	c.354	p.K118N	0.998	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803	105	0	0	36	49	57.65	-	-	-	C	65617722	G	C	65617722	3	2	282	1	0	0	0	0	1	0	0	0	14991	933	33	2	368	2	SNX32	11	65617722	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	1080953	65617722	69388794	43	32494										
PACS1	0	genome.wustl.edu	37	chr11	65998376	65998376	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	agaggaccaacagttccgacAgcgagcgctccccagatctg	11	14	1	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	65998376	65998376	A	T	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	missense	c.1591	p.S531C	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	167	0	0	122	39	24.22	-	-	-	T	65998376	A	T	65998376	3	4	282	1	0	0	0	0	1	0	0	0	11445	188	7	5	1641	5	PACS1	11	65998376	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	380654	65998376	69008140	44	32495										
FAT3	0	genome.wustl.edu	37	chr11	92623767	92623767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	ctgcacaccaggggagcacaCgggagctggagagcgattac	15	11	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	11	92623767	92623767	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.13258	p.R4420W	0.950	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	63	0	0	47	18	27.69	-	-	-	T	92623767	C	T	92623767	3	4	282	1	0	0	0	0	1	0	0	0	5737	527	19	1	13260	1	FAT3	11	92623767	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	26625391	92623767	42382749	45	32496										
TROAP	0	genome.wustl.edu	37	chr12	49717812	49717812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tgtggggcctgggccccctgCccagacaggtacctgttgga	15	13	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	12	49717812	49717812	C	T	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	missense	c.329	p.A110V	0.007	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	148	0	0	34	64	65.31	-	-	-	T	49717812	C	T	49717812	3	4	282	1	0	0	0	0	1	0	0	0	16671	739	26	4	335	4	TROAP	12	49717812	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		49717812	84134083	46	32497										
XPOT	0	genome.wustl.edu	37	chr12	64815088	64815088	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	acagtcattgatagttagttGgagtaaattaattaagaatg	9	2	1	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	12	64815088	64815088	G	C	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	missense	c.917	p.W306S	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	171	0	0	63	84	57.14	-	-	-	C	64815088	G	C	64815088	3	2	282	1	0	0	0	0	1	0	0	0	17547	1357	47	4	947	4	XPOT	12	64815088	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	15097276	64815088	69036807	47	32498										
BAZ1A	0	genome.wustl.edu	37	chr14	35243682	35243682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	actatatgttggtttgctatCaggctgaggtttgtctgaaa	11	5	2	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	14	35243682	35243682	C	G	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.2848	p.D950H	0.994	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	174	0	0	135	63	31.66	-	-	-	G	35243682	C	G	35243682	3	3	282	1	0	0	0	0	1	0	0	0	1333	826	29	2	1858	2	BAZ1A	14	35243682	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		35243682	72105858	48	32499										
PLEKHG3	0	genome.wustl.edu	37	chr14	65207860	65207860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	agaatctccagaagtcctggAgacacagcttgatgcccacc	9	13	1	4			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	14	65207860	65207860	A	G	SNP	PLEKHG3	ENST00000394691	human	ensembl	69_37n	1	known	missense	c.1625	p.E542G	0.388	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	24	0	0	7	4	36.36	-	-	-	G	65207860	A	G	65207860	3	3	282	1	0	0	0	0	1	0	0	0	12144	304	11	5	1507	5	PLEKHG3	14	65207860	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	29964178	65207860	42141680	49	32500										
NRXN3	0	genome.wustl.edu	37	chr14	79423678	79423678	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gagaggaaaaagccttaagtTaaccgtggatgatgatgtgg	14	4	0	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	14	79423678	79423678	T	G	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	nonsense	c.2336	p.L779*	0.956	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	209	0	0	143	69	32.55	-	-	-	G	79423678	T	G	79423678	4	3	282	1	0	0	0	0	0	1	0	0	10740	1764	61	5	1272	5	NRXN3	14	79423678	Nonsense_Mutation	SNP	T	TCGA-AN-A0AL-01A-11W-A019-09	14215818	79423678	27925862	50	32501										
ASB2	0	genome.wustl.edu	37	chr14	94420823	94420823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	atggcctttatcaaggggtcCgcaggcctgtgagaggaagg	16	8	1	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	14	94420823	94420823	C	T	SNP	ASB2	ENST00000315988	human	ensembl	69_37n	-1	known	silent	c.174	p.A58	0.322	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628	32	0	0	12	9	42.86	-	-	-	T	94420823	C	T	94420823	2	4	282	1	0	0	0	0	0	0	0	1	1027	639	23	1		1	ASB2	14	94420823	Silent	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	14997145	94420823	12928717	51	32502										
MAP1A	0	genome.wustl.edu	37	chr15	43813802	43813802	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gccttgttgctacatcttccCaggtggtcgtggggactctg	13	11	2	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	15	43813802	43813802	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.131	p.P44Q	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	113	0	0	65	39	37.5	-	-	-	A	43813802	C	A	43813802	3	1	282	1	0	0	0	0	1	0	0	0	9298	594	21	4	133	4	MAP1A	15	43813802	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		43813802	58717590	52	32503										
HERC1	0	genome.wustl.edu	37	chr15	64050494	64050494	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	acctcacaggtttcggagacAatgggagcatcaccagtctg	11	11	3	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	15	64050494	64050494	A	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.1101	p.I367M	0.996	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	128	0	0	89	42	32.06	-	-	-	C	64050494	A	C	64050494	3	2	282	1	0	0	0	0	1	0	0	0	7108	126	5	5	13784	5	HERC1	15	64050494	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	20236692	64050494	38480898	53	32504										
ASB7	0	genome.wustl.edu	37	chr15	101169774	101169774	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	catcattaatgcaaaaagcaAtgacggctggactcccctcc	7	13	1	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	15	101169774	101169774	A	G	SNP	ASB7	ENST00000332783	human	ensembl	69_37n	1	known	missense	c.344	p.N115S	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475	227	0	0	421	86	16.93	-	-	-	G	101169774	A	G	101169774	3	3	282	1	0	0	0	0	1	0	0	0	1032	101	4	5	350	5	ASB7	15	101169774	Missense_Mutation	SNP	A	TCGA-AN-A0AL-01A-11W-A019-09	37119280	101169774	1361618	54	32505										
TSR1	0	genome.wustl.edu	37	chr17	2239717	2239717	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcgggccggggcggtgggccGccatgccgcagcgcgcgtgt	21	14	0	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	2239717	2239717	G	T	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.5	p.A2E	0.998	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	12	0	0	0	7	100	-	-	-	T	2239717	G	T	2239717	3	4	282	1	0	0	0	0	1	0	0	0	16760	1087	38	3	2469	3	TSR1	17	2239717	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		2239717	78955493	55	32506										
WSCD1	0	genome.wustl.edu	37	chr17	6023829	6023829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gcgtggagaacaacaaggagGgcagcttccggcggcgcggc	18	11	0	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	6023829	6023829	G	C	SNP	WSCD1	ENST00000317744	human	ensembl	69_37n	1	known	missense	c.1576	p.G526R	1.000	NULL	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314	63	0	0	6	13	68.42	-	-	-	C	6023829	G	C	6023829	3	2	282	1	0	0	0	0	1	0	0	0	17503	1232	43	4	1606	4	WSCD1	17	6023829	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	3784112	6023829	75171381	56	32507										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	125	0	0	35	55	61.11	-	-	-	T	7578406	C	T	7578406	3	4	282	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	1554577	7578406	73616804	57	32508										
TRPV2	0	genome.wustl.edu	37	chr17	16326990	16326990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tgggctcctccaagctggggCccgcctctgccctaccgtgc	12	18	1	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	16326990	16326990	C	A	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	missense	c.833	p.A278D	0.025	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	89	0	0	12	15	55.56	-	-	-	A	16326990	C	A	16326990	3	1	282	1	0	0	0	0	1	0	0	0	16692	739	26	4	847	4	TRPV2	17	16326990	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	8748584	16326990	64868220	58	32509										
CCDC144A	0	genome.wustl.edu	37	chr17	16638380	16638380	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tgactgtgatcaaagtcagaCagcaagagacctaaaacttg	9	8	2	4			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	16638380	16638380	C	G	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.2795	p.T932R	1.000	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	130	0	0	56	53	48.62	-	-	-	G	16638380	C	G	16638380	3	3	282	1	0	0	0	0	1	0	0	0	2802	478	17	4	2841	4	CCDC144A	17	16638380	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	311390	16638380	64556830	59	32510										
NF1	0	genome.wustl.edu	37	chr17	29496956	29496958	+	In_Frame_Del	DEL	ATA	ATA	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	agacaatgttgatgttcatgAtatagaattgttacagtata							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	29496956	29496958	ATA	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	in_frame_del	c.527_529	p.DI176in_frame_delV	1.000:1.000:1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	111	0	0	62	26	28.89	-	-	-	-	29496958	ATA	-	29496956	7	5	282	1	0	1	0	1	0	0	0	0	10428	333	12	0	545	0	NF1	17	29496956	In_Frame_Del	DEL	ATA	TCGA-AN-A0AL-01A-11W-A019-09	12858576	29496956	51698254	60	32511	259	2								
NF1	0	genome.wustl.edu	37	chr17	29496963	29496964	+	Frame_Shift_Del	DEL	AT	AT	-													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gttgatgttcatgatatagaAttgttacagtatatcaatgt							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	29496963	29496964	AT	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_del	c.534_535	p.E178fs	1.000:1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	106	0	0	58	27	31.76	-	-	-	-	29496964	AT	-	29496963	7	5	282	1	0	1	0	1	0	0	0	0	10428	98	4	0	552	0	NF1	17	29496963	Frame_Shift_Del	DEL	AT	TCGA-AN-A0AL-01A-11W-A019-09	7	29496963	51698247	61	32512	259	2								
MYO19	0	genome.wustl.edu	37	chr17	34856996	34856997	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	caccagttatggctgctgccINStgagttaggaccggcagagt							TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	17	34856996	34856997	-	A	INS	MYO19	ENST00000431794	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2160_2159	p.Q720fs	0.000:0.000	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO19	HGNC	ENSG00000141140	71	0	0	28	26	48.15	-	-	-	A	34856997	-	A	34856996	7	5	282	1	0	1	1	0	0	0	0	0	10139	680	24	0	772	0	MYO19	17	34856996	Frame_Shift_Ins	INS	-	TCGA-AN-A0AL-01A-11W-A019-09	5360033	34856996	46338214	62	32513										
CCDC102B	0	genome.wustl.edu	37	chr18	66721311	66721311	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	cgtaagctccagaggtctctGgatgaagagaaagaaagaaa	12	6	1	5			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	18	66721311	66721311	G	A	SNP	CCDC102B	ENST00000319445	human	ensembl	69_37n	1	known	silent	c.1479	p.L493	0.994	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636	266	0	0	86	92	51.69	-	-	-	A	66721311	G	A	66721311	2	1	282	1	0	0	0	0	0	0	0	1	2762	1335	47	4		4	CCDC102B	18	66721311	Silent	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		66721311	11355937	63	32514										
ACTL9	0	genome.wustl.edu	37	chr19	8808096	8808096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	acttgcggagactctgcttgGccatggtggagaggccgacg	16	10	1	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	19	8808096	8808096	G	T	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	missense	c.956	p.A319D	0.947	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	59	0	0	11	21	65.62	-	-	-	T	8808096	G	T	8808096	3	4	282	1	0	0	0	0	1	0	0	0	203	1203	42	4	298	4	ACTL9	19	8808096	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		8808096	50320887	64	32515										
ZNF224	0	genome.wustl.edu	37	chr19	44611903	44611903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	aagtttaatcttgatatgcaCcagaaggtccacacaggaga	9	8	1	3			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	19	44611903	44611903	C	T	SNP	ZNF224	ENST00000336976	human	ensembl	69_37n	1	known	silent	c.1590	p.H530	0.125	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680	370	0	0	254	125	32.98	-	-	-	T	44611903	C	T	44611903	2	4	282	1	0	0	0	0	0	0	0	1	17874	506	18	4		4	ZNF224	19	44611903	Silent	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	35803807	44611903	14517080	65	32516										
KIR3DL2	0	genome.wustl.edu	37	chr19	55363521	55363521	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	ctcgaggaggacacgtggctCttcagtgtcactatcgtcgt	12	11	3	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	19	55363521	55363521	C	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.139	p.L47F	0.004	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	89	0	0	41	29	41.43	-	-	-	T	55363521	C	T	55363521	3	4	282	1	0	0	0	0	1	0	0	0	8374	913	32	2	149	2	KIR3DL2	19	55363521	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	10751618	55363521	3765462	66	32517										
NLRP11	0	genome.wustl.edu	37	chr19	56320649	56320649	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tatgaacttgtaacggtcttTatgagtgttgctcggcaaaa	10	6	1	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	19	56320649	56320649	T	C	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.1327	p.K443E	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	364	0	0	175	111	38.81	-	-	-	C	56320649	T	C	56320649	3	2	282	1	0	0	0	0	1	0	0	0	10545	1763	61	5	1806	5	NLRP11	19	56320649	Missense_Mutation	SNP	T	TCGA-AN-A0AL-01A-11W-A019-09	957128	56320649	2808334	67	32518										
RBL1	0	genome.wustl.edu	37	chr20	35651110	35651110	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	tccaaatgcctgtctttcatTagatcaggacagtgaactaa	7	9	3	2			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	20	35651110	35651110	T	C	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	silent	c.2502	p.L834	0.713	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	100	0	0	63	27	30	-	-	-	C	35651110	T	C	35651110	2	2	282	1	0	0	0	0	0	0	0	1	13192	1741	61	5		5	RBL1	20	35651110	Silent	SNP	T	TCGA-AN-A0AL-01A-11W-A019-09		35651110	27374410	68	32519										
FAM65C	0	genome.wustl.edu	37	chr20	49221293	49221293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gggctgggtgacaccaggaaGctctcagtatcaaacgggct	14	10	2	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	20	49221293	49221293	G	T	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.975	p.S325R	0.952	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	27	0	0	14	4	22.22	-	-	-	T	49221293	G	T	49221293	3	4	282	1	0	0	0	0	1	0	0	0	5646	962	34	4	1921	4	FAM65C	20	49221293	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09	13570183	49221293	13804227	69	32520										
RFPL3	0	genome.wustl.edu	37	chr22	32756346	32756346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	agaatcggcaagaccttgccGagagatttgacgtgtccgtt	12	9	0	4			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	22	32756346	32756346	G	A	SNP	RFPL3	ENST00000249007	human	ensembl	69_37n	1	known	missense	c.481	p.E161K	0.011	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL3	HGNC	ENSG00000128276	89	0	0	122	42	25.45	-	-	-	A	32756346	G	A	32756346	3	1	282	1	0	0	0	0	1	0	0	0	13338	1059	37	1	487	1	RFPL3	22	32756346	Missense_Mutation	SNP	G	TCGA-AN-A0AL-01A-11W-A019-09		32756346	18548220	70	32521										
CFP	0	genome.wustl.edu	37	chrX	47485756	47485756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gctggatgctgtagcagtgcCggatatcctgctgttgcccg	14	11	0	0			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	X	47485756	47485756	C	T	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	missense	c.1103	p.R368Q	0.499	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	41	0	0	14	9	39.13	-	-	-	T	47485756	C	T	47485756	3	4	282	1	0	0	0	0	1	0	0	0	3322	652	23	1	318	1	CFP	23	47485756	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09		47485756	107784804	71	32522										
RGAG1	0	genome.wustl.edu	37	chrX	109697417	109697417	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.809468526516255	1.1378884180791	1.98613251155624	0.693570083400592	1	1	0	gagaatggcatttctggtatCtcttcatctgggagcagcag	12	8	4	1			TCGA-AN-A0AL-01A-11W-A019-09	TCGA-AN-A0AL-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47849ee3-b59e-4ccf-a261-65f7e252b885	2f79e4ef-5112-4d70-8320-ca2148b47621	X	109697417	109697417	C	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.3572	p.S1191Y	1.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	511	0	0	202	107	34.63	-	-	-	A	109697417	C	A	109697417	3	1	282	1	0	0	0	0	1	0	0	0	13357	913	32	2	3574	2	RGAG1	23	109697417	Missense_Mutation	SNP	C	TCGA-AN-A0AL-01A-11W-A019-09	62211661	109697417	45573143	72	32523										
TNR	0	genome.wustl.edu	37	chr1	175348868	175348868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tcgcaagttcttgggggcatCgatctctaaaaatagacaga	10	8	2	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	1	175348868	175348868	C	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.1783	p.D595N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	72	0	0	100	13	11.5	-	-	-	T	175348868	C	T	175348868	3	4	283	1	0	0	0	0	1	0	0	0	16433	884	31	1	2353	1	TNR	1	175348868	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		175348868	73901753	1	32524										
RBBP5	0	genome.wustl.edu	37	chr1	205069184	205069184	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cagagaaacaacatttcttcCatggggtcctaaaggacaag	9	9	1	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	1	205069184	205069184	C	T	SNP	RBBP5	ENST00000264515	human	ensembl	69_37n	-1	known	nonsense	c.761	p.W254*	1.000	smart_WD40_repeat	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222	125	0	0	150	23	13.29	-	-	-	T	205069184	C	T	205069184	4	4	283	1	0	0	0	0	0	1	0	0	13185	595	21	4	883	4	RBBP5	1	205069184	Nonsense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	29720316	205069184	44181437	2	32525										
NR2C2	0	genome.wustl.edu	37	chr3	15064743	15064743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gaagcccttcgatgtgcaacGggagaaaccaagcaattgtg	12	9	0	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	15064743	15064743	G	T	SNP	NR2C2	ENST00000323373	human	ensembl	69_37n	1	known	missense	c.650	p.R217L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463	129	0	0	105	15	12.4	-	-	-	T	15064743	G	T	15064743	3	4	283	1	0	0	0	0	1	0	0	0	10696	1116	39	3	672	3	NR2C2	3	15064743	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09		15064743	182957687	3	32526										
DNAH1	0	genome.wustl.edu	37	chr3	52404636	52404636	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	agccactggctaaggctcaaGatggagaacgaacaggtgag	14	8	1	3			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	52404636	52404636	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.6402	p.K2134	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	26	0	0	24	4	14.29	-	-	-	A	52404636	G	A	52404636	2	1	283	1	0	0	0	0	0	0	0	1	4633	933	33	2		2	DNAH1	3	52404636	Silent	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	37339893	52404636	145617794	4	32527										
ROBO2	0	genome.wustl.edu	37	chr3	77684051	77684051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tacctcctctcaaagacctcGacctaccagcccattttcta	3	17	2	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	77684051	77684051	G	A	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.3791	p.R1264Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	220	0	0	153	25	14.04	-	-	-	A	77684051	G	A	77684051	3	1	283	1	0	0	0	0	1	0	0	0	13600	1058	37	1	3887	1	ROBO2	3	77684051	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	25279415	77684051	120338379	5	32528										
GBE1	0	genome.wustl.edu	37	chr3	81754674	81754674	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ccaccatcagcacatctgtgGacgccaaatgattcatagcc	7	14	3	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	81754674	81754674	G	A	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	silent	c.234	p.V78	0.978	pfam_Glyco_hydro_13_N,superfamily_Ig_E-set	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	97	0	0	50	11	18.03	-	-	-	A	81754674	G	A	81754674	2	1	283	1	0	0	0	0	0	0	0	1	6320	1161	41	2		2	GBE1	3	81754674	Silent	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	4070623	81754674	116267756	6	32529										
EPHB1	0	genome.wustl.edu	37	chr3	134644715	134644715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gggctggacggccaatcctgCgtccggggtgagtatcaaac	15	11	1	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	134644715	134644715	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.116	p.A39V	0.588	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	163	0	0	179	22	10.95	-	-	-	T	134644715	C	T	134644715	3	4	283	1	0	0	0	0	1	0	0	0	5211	768	27	1	122	1	EPHB1	3	134644715	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	52890041	134644715	63377715	7	32530										
PIK3CB	0	genome.wustl.edu	37	chr3	138453537	138453537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gattagatgaatttcgatttAtggcagcctctatggcaatc	9	7	1	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	138453537	138453537	A	C	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.911	p.I304R	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	262	0	0	160	63	28.12	-	-	-	C	138453537	A	C	138453537	3	2	283	1	0	0	0	0	1	0	0	0	11988	449	16	5	2371	5	PIK3CB	3	138453537	Missense_Mutation	SNP	A	TCGA-AN-A0AM-01A-11W-A050-09	3808822	138453537	59568893	8	32531										
MFI2	0	genome.wustl.edu	37	chr3	196749945	196749946	+	Frame_Shift_Ins	INS	-	-	C													0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	agagtaactggtctctcctgINScccccgggacgcagctgccc							TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	3	196749945	196749946	-	C	INS	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	frame_shift_ins	c.527_526	p.A176fs	1.000:1.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	12	0	0	10	2	16.67	-	-	-	C	196749946	-	C	196749945	7	5	283	1	0	1	1	0	0	0	0	0	9593	1319	46	0	1938	0	MFI2	3	196749945	Frame_Shift_Ins	INS	-	TCGA-AN-A0AM-01A-11W-A050-09	58296408	196749945	1272485	9	32532										
NDST4	0	genome.wustl.edu	37	chr4	115997884	115997884	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ataaccatgtggtactgaaaTcggctggactccaaaatagc	9	9	0	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	4	115997884	115997884	T	G	SNP	NDST4	ENST00000264363	human	ensembl	69_37n	-1	known	silent	c.309	p.R103	0.857	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST4	HGNC	ENSG00000138653	322	0	0	238	27	10.19	-	-	-	G	115997884	T	G	115997884	2	3	283	1	0	0	0	0	0	0	0	1	10330	1422	50	5		5	NDST4	4	115997884	Silent	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09		115997884	75156392	10	32533										
OTUD4	0	genome.wustl.edu	37	chr4	146076764	146076764	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tcatattccacatttctataGactgcaggattgagtgactt	7	8	2	3			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	4	146076764	146076764	G	C	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	silent	c.765	p.V255	0.997	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	83	0	0	45	6	11.76	-	-	-	C	146076764	G	C	146076764	2	2	283	1	0	0	0	0	0	0	0	1	11387	929	33	2		2	OTUD4	4	146076764	Silent	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	30078880	146076764	45077512	11	32534										
ADAMTS16	0	genome.wustl.edu	37	chr5	5232546	5232546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	aagcccacccatggccactgGtcggactggtcttcttggtc	11	14	2	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	5	5232546	5232546	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.1767	p.W589C	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	127	0	0	174	26	13	-	-	-	T	5232546	G	T	5232546	3	4	283	1	0	0	0	0	1	0	0	0	261	1270	44	4	1813	4	ADAMTS16	5	5232546	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09		5232546	175682714	12	32535										
CCDC69	0	genome.wustl.edu	37	chr5	150565026	150565026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gcctgtccagctcatgaataCgctcattcttcatctcgatg	7	13	5	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	5	150565026	150565026	C	T	SNP	CCDC69	ENST00000355417	human	ensembl	69_37n	-1	known	missense	c.572	p.R191H	0.998	superfamily_ER_p29_C	superfamily_ER_p29_C	-	no_errors	CCDC69	HGNC	ENSG00000198624	87	0	0	125	21	14.38	-	-	-	T	150565026	C	T	150565026	3	4	283	1	0	0	0	0	1	0	0	0	2868	536	19	1	330	1	CCDC69	5	150565026	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	145332480	150565026	30350234	13	32536										
FBXL18	0	genome.wustl.edu	37	chr7	5540158	5540158	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tgcagtgcttcaacatgtctGagagcgcgggcatgtacacc	12	11	2	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	7	5540158	5540158	G	T	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	nonsense	c.1742	p.S581*	0.009	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	10	0	0	21	5	19.23	-	-	-	T	5540158	G	T	5540158	4	4	283	1	0	0	0	0	0	1	0	0	5760	1294	45	2	426	2	FBXL18	7	5540158	Nonsense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09		5540158	153598505	14	32537										
MUC17	0	genome.wustl.edu	37	chr7	100676850	100676850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tcctgttgacaccagcacacCtgtgaccacttcaactgaag	7	14	1	3			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	7	100676850	100676850	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.2153	p.P718L	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	274	0	0	132	21	13.55	-	-	-	T	100676850	C	T	100676850	3	4	283	1	0	0	0	0	1	0	0	0	10046	681	24	4	2163	4	MUC17	7	100676850	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	95136692	100676850	58461813	15	32538										
PLOD3	0	genome.wustl.edu	37	chr7	100855927	100855927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	aaacacggccagaaacacccGggggggaggctggaagatgc	16	10	0	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	7	100855927	100855927	G	A	SNP	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	missense	c.889	p.R297W	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	46	0	0	49	9	15.25	-	-	-	A	100855927	G	A	100855927	3	1	283	1	0	0	0	0	1	0	0	0	12177	1115	39	1	1371	1	PLOD3	7	100855927	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	179077	100855927	58282736	16	32539										
SLC35B4	0	genome.wustl.edu	37	chr7	133986554	133986554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cctggaatccatcattctcaCtcaagctggactgggaagtc	9	12	3	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	7	133986554	133986554	C	T	SNP	SLC35B4	ENST00000378509	human	ensembl	69_37n	-1	known	missense	c.446	p.S149N	0.770	pfam_UAA	pfam_UAA,pfam_DUF250	-	no_errors	SLC35B4	HGNC	ENSG00000205060	72	0	0	40	8	16.33	-	-	-	T	133986554	C	T	133986554	3	4	283	1	0	0	0	0	1	0	0	0	14667	565	20	4	569	4	SLC35B4	7	133986554	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	33130627	133986554	25152109	17	32540										
RUNX1T1	0	genome.wustl.edu	37	chr8	93029469	93029469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cttacacgttgtcggtgtaaAtgaactggttcttggagctc	11	8	1	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	8	93029469	93029469	A	G	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	missense	c.244	p.F82L	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	322	1	0.31	214	28	11.57	-	-	-	G	93029469	A	G	93029469	3	3	283	1	0	0	0	0	1	0	0	0	13833	101	4	5	1643	5	RUNX1T1	8	93029469	Missense_Mutation	SNP	A	TCGA-AN-A0AM-01A-11W-A050-09		93029469	53334553	18	32541										
OR1L6	0	genome.wustl.edu	37	chr9	125512715	125512715	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gctctgacacatcctccagcCagatggtggtgatgactgag	12	11	1	5			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	9	125512715	125512715	C	A	SNP	OR1L6	ENST00000373684	human	ensembl	69_37n	1	known	missense	c.697	p.Q233K	0.071	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	122	0	0	83	21	20.19	-	-	-	A	125512715	C	A	125512715	3	1	283	1	0	0	0	0	1	0	0	0	11039	595	21	4	591	4	OR1L6	9	125512715	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		125512715	15700716	19	32542										
GATA3	0	genome.wustl.edu	37	chr10	8111507	8111508	+	Frame_Shift_Ins	INS	-	-	G													0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ccacactctggaggaggaatINSgccaatggggaccctgtctg							TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	10	8111507	8111508	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.996_997	p.A332fs	0.872:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	104	0	0	97	29	23.02	-	-	-	G	8111508	-	G	8111507	7	5	283	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1010	0	GATA3	10	8111507	Frame_Shift_Ins	INS	-	TCGA-AN-A0AM-01A-11W-A050-09		8111507	127423240	20	32543										
NEBL	0	genome.wustl.edu	37	chr10	21186081	21186081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tcttcattttcttcttccccTatcttttcttcttcagtttc	1	13	8	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	10	21186081	21186081	T	C	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	missense	c.54	p.I18M	0.007	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	480	0	0	167	49	22.58	-	-	-	C	21186081	T	C	21186081	3	2	283	1	0	0	0	0	1	0	0	0	10375	1512	53	5	3102	5	NEBL	10	21186081	Missense_Mutation	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09	13074574	21186081	114348666	21	32544										
ANKRD26	0	genome.wustl.edu	37	chr10	27326932	27326932	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	aactgttccctaattttttcAtacaacgtatcagcatttct	3	10	3	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	10	27326932	27326932	A	G	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	silent	c.2475	p.Y825	0.003	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	180	0	0	103	15	12.71	-	-	-	G	27326932	A	G	27326932	2	3	283	1	0	0	0	0	0	0	0	1	654	224	8	5		5	ANKRD26	10	27326932	Silent	SNP	A	TCGA-AN-A0AM-01A-11W-A050-09	6140851	27326932	108207815	22	32545										
DPYSL4	0	genome.wustl.edu	37	chr10	134010537	134010537	+	Frame_Shift_Del	DEL	T	T	-													0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cttcccagatgtacgagatcTtcagcatcatccgggacctg							TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	10	134010537	134010537	T	-	DEL	DPYSL4	ENST00000338492	human	ensembl	69_37n	1	known	frame_shift_del	c.553	p.F185fs	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640	16	0	0	22	10	31.25	-	-	-	-	134010537	T	-	134010537	7	5	283	1	0	1	0	1	0	0	0	0	4784	1609	56	0	575	0	DPYSL4	10	134010537	Frame_Shift_Del	DEL	T	TCGA-AN-A0AM-01A-11W-A050-09	106683605	134010537	1524210	23	32546										
DSCAML1	0	genome.wustl.edu	37	chr11	117374631	117374631	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tggcctggcagaggtagtagCcgatgtcctcttctaggacg	14	10	2	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	11	117374631	117374631	C	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.2468	p.G823V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	76	0	0	77	29	27.36	-	-	-	A	117374631	C	A	117374631	3	1	283	1	0	0	0	0	1	0	0	0	4804	739	26	4	3965	4	DSCAML1	11	117374631	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		117374631	17631885	24	32547										
CBL	0	genome.wustl.edu	37	chr11	119103160	119103160	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ctttttcatttgttgcaggtGgtgcggttgtgtcagaaccc	12	8	2	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	11	119103160	119103160	G	T	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	silent	c.198	p.V66	1.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	90	0	0	66	13	16.46	-	-	-	T	119103160	G	T	119103160	2	4	283	1	0	0	0	0	0	0	0	1	2725	1335	47	4		4	CBL	11	119103160	Silent	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	1728529	119103160	15903356	25	32548										
PRDM10	0	genome.wustl.edu	37	chr11	129827805	129827805	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tgtgtccggaacaaagtgcaCctggcataaacaggagacaa	11	9	0	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	11	129827805	129827805	C	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.70	p.V24L	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	50	0	0	69	21	23.08	-	-	-	A	129827805	C	A	129827805	3	1	283	1	0	0	0	0	1	0	0	0	12532	521	18	4	3528	4	PRDM10	11	129827805	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	10724645	129827805	5178711	26	32549										
KIF21A	0	genome.wustl.edu	37	chr12	39764027	39764027	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	acagatgtacaaatatggcaTccttcaatcttctctttggc	6	10	3	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	12	39764027	39764027	T	C	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	silent	c.81	p.G27	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	145	0	0	95	13	12.04	-	-	-	C	39764027	T	C	39764027	2	2	283	1	0	0	0	0	0	0	0	1	8340	1422	50	5		5	KIF21A	12	39764027	Silent	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09		39764027	94087868	27	32550										
TBK1	0	genome.wustl.edu	37	chr12	64878170	64878170	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tacgaagggcgacgcttagtCttagaacctggaaggctggc	14	9	1	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	12	64878170	64878170	C	G	SNP	TBK1	ENST00000331710	human	ensembl	69_37n	1	known	silent	c.1080	p.V360	0.951	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TBK1	HGNC	ENSG00000183735	111	0	0	112	27	19.42	-	-	-	G	64878170	C	G	64878170	2	3	283	1	0	0	0	0	0	0	0	1	15732	900	32	2		2	TBK1	12	64878170	Silent	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	25114143	64878170	68973725	28	32551										
SVOP	0	genome.wustl.edu	37	chr12	109311868	109311868	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	agcctccagaaataaacgctCttgcaatgaagagtaacaga	8	9	1	4			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	12	109311868	109311868	C	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369K	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	263	0	0	204	26	11.3	-	-	-	T	109311868	C	T	109311868	3	4	283	1	0	0	0	0	1	0	0	0	15514	913	32	2	357	2	SVOP	12	109311868	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	44433698	109311868	24540027	29	32552										
CATSPERB	0	genome.wustl.edu	37	chr14	92047238	92047238	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	atgatcaccatgtgttcactCttcagactttgatctatgaa	6	9	5	4			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	14	92047238	92047238	C	G	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	missense	c.3346	p.E1116Q	0.000	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	191	0	0	110	19	14.73	-	-	-	G	92047238	C	G	92047238	3	3	283	1	0	0	0	0	1	0	0	0	2716	922	32	2	8	2	CATSPERB	14	92047238	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		92047238	15302302	30	32553										
TC2N	0	genome.wustl.edu	37	chr14	92249447	92249447	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	attaatgtgtgaagtcttcaAgatggatttaatttgtgcca	9	4	2	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	14	92249447	92249447	A	T	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	silent	c.1470	p.S490	0.993	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	209	1	0.48	175	27	13.37	-	-	-	T	92249447	A	T	92249447	2	4	283	1	0	0	0	0	0	0	0	1	15760	59	3	5		5	TC2N	14	92249447	Silent	SNP	A	TCGA-AN-A0AM-01A-11W-A050-09	202209	92249447	15100093	31	32554										
RASGRF1	0	genome.wustl.edu	37	chr15	79298697	79298697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ccgctccacactggcgtagcGgatctgcagcactttgcagg	12	14	1	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	15	79298697	79298697	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.1945	p.R649C	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	99	0	0	101	82	44.32	-	-	-	A	79298697	G	A	79298697	3	1	283	1	0	0	0	0	1	0	0	0	13155	1116	39	1	1932	1	RASGRF1	15	79298697	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09		79298697	23232695	32	32555										
IGF1R	0	genome.wustl.edu	37	chr15	99440131	99440131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tgctcattaacatccgacggGggagtaagtattccatcccc	9	12	1	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	15	99440131	99440131	G	T	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.1099	p.G367W	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	108	0	0	591	917	60.81	-	-	-	T	99440131	G	T	99440131	3	4	283	1	0	0	0	0	1	0	0	0	7625	1232	43	4	1113	4	IGF1R	15	99440131	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	20141434	99440131	3091261	33	32556										
TSR1	0	genome.wustl.edu	37	chr17	2235542	2235542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tctttcttgtttatatttctCcaacatttttgcctcagctt	3	10	4	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	17	2235542	2235542	C	G	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1417	p.E473Q	1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	156	0	0	182	25	12.08	-	-	-	G	2235542	C	G	2235542	3	3	283	1	0	0	0	0	1	0	0	0	16760	864	30	2	1029	2	TSR1	17	2235542	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		2235542	78959668	34	32557										
RNF135	0	genome.wustl.edu	37	chr17	29325889	29325889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ggaattgcagccactgggcaGttggggtggcttcctgggag	18	8	0	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	17	29325889	29325889	G	T	SNP	RNF135	ENST00000328381	human	ensembl	69_37n	1	known	missense	c.979	p.V327F	0.957	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF135	HGNC	ENSG00000181481	78	0	0	51	10	16.39	-	-	-	T	29325889	G	T	29325889	3	4	283	1	0	0	0	0	1	0	0	0	13526	1029	36	4	1066	4	RNF135	17	29325889	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09	27090347	29325889	51869321	35	32558										
KIF2B	0	genome.wustl.edu	37	chr17	51901125	51901125	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cgtcccctcggacaatgtggTtatggtgcatgagtccaagc	12	11	0	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	17	51901125	51901125	T	C	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.731	p.V244A	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	75	0	0	102	26	20.31	-	-	-	C	51901125	T	C	51901125	3	2	283	1	0	0	0	0	1	0	0	0	8350	1725	60	5	733	5	KIF2B	17	51901125	Missense_Mutation	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09	22575236	51901125	29294085	36	32559										
FAM20A	0	genome.wustl.edu	37	chr17	66533795	66533795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	aggacagggctgagctggtcTtccagcagtgattctcgcat	13	10	2	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	17	66533795	66533795	T	G	SNP	FAM20A	ENST00000592554	human	ensembl	69_37n	-1	known	missense	c.1449	p.E483D	0.004	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20A	HGNC	ENSG00000108950	91	0	0	243	59	19.54	-	-	-	G	66533795	T	G	66533795	3	3	283	1	0	0	0	0	1	0	0	0	5579	1606	56	5	180	5	FAM20A	17	66533795	Missense_Mutation	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09	14632670	66533795	14661415	37	32560										
FUT3	0	genome.wustl.edu	37	chr19	5844460	5844460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	caagttgaaccagatccagcGctgcccctgcggcctcgggg	13	15	0	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	19	5844460	5844460	G	A	SNP	FUT3	ENST00000303225	human	ensembl	69_37n	-1	known	missense	c.391	p.R131C	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124	60	0	0	54	8	12.7	-	-	-	A	5844460	G	A	5844460	3	1	283	1	0	0	0	0	1	0	0	0	6154	1087	38	1	698	1	FUT3	19	5844460	Missense_Mutation	SNP	G	TCGA-AN-A0AM-01A-11W-A050-09		5844460	53284523	38	32561										
CYP4F12	0	genome.wustl.edu	37	chr19	15807003	15807003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tcatcgatattataggggtcCatcacaacccaactgtgtgg	9	10	2	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	19	15807003	15807003	C	T	SNP	CYP4F12	ENST00000324632	human	ensembl	69_37n	1	known	missense	c.1282	p.H428Y	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204	292	0	0	434	155	26.32	-	-	-	T	15807003	C	T	15807003	3	4	283	1	0	0	0	0	1	0	0	0	4218	594	21	4	1320	4	CYP4F12	19	15807003	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	9962543	15807003	43321980	39	32562			1	58		3	3	833	C		7.626786e-07
CYP4F12	0	genome.wustl.edu	37	chr19	15807308	15807308	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cctctggcttttattcctttCtccgcagggcccaggtaaga	9	13	2	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	19	15807308	15807308	C	G	SNP	CYP4F12	ENST00000324632	human	ensembl	69_37n	1	known	missense	c.1383	p.F461L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204	200	0	0	171	49	22.27	-	-	-	G	15807308	C	G	15807308	3	3	283	1	0	0	0	0	1	0	0	0	4218	912	32	2	1425	2	CYP4F12	19	15807308	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	305	15807308	43321675	40	32563			1	58		3	3	833	C		7.626786e-07
CYP4F12	0	genome.wustl.edu	37	chr19	15807835	15807835	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	cgcaggaagctggaattgatCatgcgcgccgagggcgggct	17	10	1	1			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	19	15807835	15807835	C	G	SNP	CYP4F12	ENST00000324632	human	ensembl	69_37n	1	known	missense	c.1515	p.I505M	0.956	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204	96	0	0	150	80	34.78	-	-	-	G	15807835	C	G	15807835	3	3	283	1	0	0	0	0	1	0	0	0	4218	816	29	2	1561	2	CYP4F12	19	15807835	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09	527	15807835	43321148	41	32564			1	58		3	3	833	C		7.626786e-07
CYP2A6	0	genome.wustl.edu	37	chr19	41351269	41351269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ccaaactcatggggatcacgTctccaaatctttggatctcg	8	12	5	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	19	41351269	41351269	T	G	SNP	CYP2A6	ENST00000301141	human	ensembl	69_37n	-1	known	missense	c.1091	p.D364A	0.660	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974	210	0	0	219	30	12	-	-	-	G	41351269	T	G	41351269	3	3	283	1	0	0	0	0	1	0	0	0	4193	1667	58	5	405	5	CYP2A6	19	41351269	Missense_Mutation	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09	25543434	41351269	17777714	42	32565										
SSTR4	0	genome.wustl.edu	37	chr20	23016933	23016933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	gtggtcgtctttgtgctctgCtggatgcctttctacgtggt	13	9	3	0			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	20	23016933	23016933	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.813	p.C271	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Neuropept_W_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	94	0	0	66	8	10.81	-	-	-	T	23016933	C	T	23016933	2	4	283	1	0	0	0	0	0	0	0	1	15291	805	28	4		4	SSTR4	20	23016933	Silent	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		23016933	40008587	43	32566										
CTPS2	0	genome.wustl.edu	37	chrX	16685675	16685675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tggcctaaactctgtggaatCagcatctgaagattaagaaa	9	7	3	3			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	X	16685675	16685675	C	T	SNP	CTPS2	ENST00000359276	human	ensembl	69_37n	-1	known	missense	c.1258	p.D420N	0.987	pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230	231	0	0	403	56	12.2	-	-	-	T	16685675	C	T	16685675	3	4	283	1	0	0	0	0	1	0	0	0	4055	826	29	2	526	2	CTPS2	23	16685675	Missense_Mutation	SNP	C	TCGA-AN-A0AM-01A-11W-A050-09		16685675	138584885	44	32567										
PCDH19	0	genome.wustl.edu	37	chrX	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G													0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	ccaaggcgatcacgtagcccINSgggggggcgctctcgctgac							TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	16	0	0	21	4	16	-	-	-	G	99662505	-	G	99662504	7	5	283	1	0	1	1	0	0	0	0	0	11587	639	23	0	2378	0	PCDH19	23	99662504	Frame_Shift_Ins	INS	-	TCGA-AN-A0AM-01A-11W-A050-09	82976829	99662504	55608056	45	32568										
RNF113A	0	genome.wustl.edu	37	chrX	119004955	119004955	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	8	0.072673350706578	2.28609625668449	5.23897058823529	1.17876838235294	0.637186343068696	1	0	tccgaagccgcagaagccagTctctttgtagtccttacaga	9	12	1	2			TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a238f21f-ca46-4759-b5b7-f8c3810dfbdb	d2910522-0610-4cef-a499-7bb1d7cb7c84	X	119004955	119004955	T	C	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.622	p.T208A	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	52	0	0	81	11	11.96	-	-	-	C	119004955	T	C	119004955	3	2	283	1	0	0	0	0	1	0	0	0	13513	1667	58	5	413	5	RNF113A	23	119004955	Missense_Mutation	SNP	T	TCGA-AN-A0AM-01A-11W-A050-09	19342451	119004955	36265605	46	32569										
OSCP1	0	genome.wustl.edu	37	chr1	36883811	36883811	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccttggctgctccgtgatctCaaactcccccatgattcgag	8	15	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	36883811	36883811	C	G	SNP	OSCP1	ENST00000235532	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357Q	0.996	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	106	0	0	12	39	76.47	-	-	-	G	36883811	C	G	36883811	3	3	284	1	0	0	0	0	1	0	0	0	11359	835	29	2	74	2	OSCP1	1	36883811	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09		36883811	212366810	1	32570										
FUBP1	0	genome.wustl.edu	37	chr1	78414864	78414864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggtgctggaggatgctgtggCattccctggggacttgtctg	17	8	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	78414864	78414864	C	T	SNP	FUBP1	ENST00000436586	human	ensembl	69_37n	-1	known	missense	c.1965	p.M655I	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	178	0	0	18	101	80.16	-	-	-	T	78414864	C	T	78414864	3	4	284	1	0	0	0	0	1	0	0	0	6141	710	25	4	40	4	FUBP1	1	78414864	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	41531053	78414864	170835757	2	32571										
ELTD1	0	genome.wustl.edu	37	chr1	79383583	79383583	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	actaccacggctgggcttagAtagccaaagatataaaaatt	8	8	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	79383583	79383583	A	G	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	silent	c.1614	p.Y538	0.996	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	298	1	0.33	44	167	79.15	-	-	-	G	79383583	A	G	79383583	2	3	284	1	0	0	0	0	0	0	0	1	5121	340	12	5		5	ELTD1	1	79383583	Silent	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	968719	79383583	169867038	3	32572										
IGSF8	0	genome.wustl.edu	37	chr1	160062779	160062779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ctgcttcacgaagccgggtcCcagaccctcgaacataggct	10	15	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	160062779	160062779	C	T	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	missense	c.1247	p.G416E	0.994	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	113	0	0	19	18	48.65	-	-	-	T	160062779	C	T	160062779	3	4	284	1	0	0	0	0	1	0	0	0	7658	623	22	4	606	4	IGSF8	1	160062779	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	80679196	160062779	89187842	4	32573										
DUSP27	0	genome.wustl.edu	37	chr1	167095371	167095371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccctggggaaggccacccagGcctccaagcccctcaccctc	9	21	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	167095371	167095371	G	T	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.1003	p.A335S	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	23	0	0	3	6	66.67	-	-	-	T	167095371	G	T	167095371	3	4	284	1	0	0	0	0	1	0	0	0	4859	1203	42	4	1021	4	DUSP27	1	167095371	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	7032592	167095371	82155250	5	32574										
CFHR4	0	genome.wustl.edu	37	chr1	196879568	196879568	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agttactgggattacattcaCtgcacacaagatgggtggtt	11	7	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	196879568	196879568	C	A	SNP	CFHR4	ENST00000367416	human	ensembl	69_37n	1	known	missense	c.954	p.H318Q	0.011	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	200	0	0	130	103	44.21	-	-	-	A	196879568	C	A	196879568	3	1	284	1	0	0	0	0	1	0	0	0	3316	580	20	4		4	CFHR4	1	196879568	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	29784197	196879568	52371053	6	32575										
NLRP3	0	genome.wustl.edu	37	chr1	247608079	247608079	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gacctgggggtcatgatgttCtgtgaagtgctgaaacagca	14	7	2	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	1	247608079	247608079	C	A	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.2967	p.F989L	0.993	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	95	0	0	35	24	40.68	-	-	-	A	247608079	C	A	247608079	3	1	284	1	0	0	0	0	1	0	0	0	10550	912	32	2	2997	2	NLRP3	1	247608079	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	50728511	247608079	1642542	7	32576										
TET3	0	genome.wustl.edu	37	chr2	74275189	74275189	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gagctcatccggcagtttgaGgctgaatttggagatagctt	13	7	1	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	74275189	74275189	G	C	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	missense	c.1740	p.E580D	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	62	0	0	43	5	10.42	-	-	-	C	74275189	G	C	74275189	3	2	284	1	0	0	0	0	1	0	0	0	15866	991	35	4	1742	4	TET3	2	74275189	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09		74275189	168924184	8	32577										
RGPD1	0	genome.wustl.edu	37	chr2	87211939	87211939	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	catataattcccagtatcttCtcagaccagcagctaatgtt	5	11	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	87211939	87211939	C	G	SNP	RGPD1	ENST00000398193	human	ensembl	69_37n	1	known	missense	c.2644	p.L882V	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD1	HGNC	ENSG00000187627	56	0	0	37	12	24.49	-	-	-	G	87211939	C	G	87211939	3	3	284	1	0	0	0	0	1	0	0	0	13368	913	32	2	2694	2	RGPD1	2	87211939	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	12936750	87211939	155987434	9	32578										
RGPD2	0	genome.wustl.edu	37	chr2	88084626	88084626	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aacattagctgctggtctgaGaagatactgggaattatatg	11	5	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	88084626	88084626	G	C	SNP	RGPD2	ENST00000398146	human	ensembl	69_37n	-1	known	missense	c.2644	p.L882V	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304	43	0	0	13	8	38.1	-	-	-	C	88084626	G	C	88084626	3	2	284	1	0	0	0	0	1	0	0	0	13369	942	33	2	8009	2	RGPD2	2	88084626	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	872687	88084626	155114747	10	32579										
FASTKD1	0	genome.wustl.edu	37	chr2	170393757	170393757	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ctactttgtggtaataaggcGtaagaaccgaggcttttaca	10	7	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	170393757	170393757	G	C	SNP	FASTKD1	ENST00000453153	human	ensembl	69_37n	-1	known	missense	c.2168	p.T723R	1.000	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399	187	0	0	159	120	42.55	-	-	-	C	170393757	G	C	170393757	3	2	284	1	0	0	0	0	1	0	0	0	5731	1145	40	3	391	3	FASTKD1	2	170393757	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	82309131	170393757	72805616	11	32580										
PPIG	0	genome.wustl.edu	37	chr2	170487451	170487451	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agaaacatcggaaaaattccCgaaaacacaagaaagaaaag	7	7	0	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	170487451	170487451	C	T	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	1	known	nonsense	c.715	p.R239*	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	186	0	0	40	258	86.29	-	-	-	T	170487451	C	T	170487451	4	4	284	1	0	0	0	0	0	1	0	0	12401	644	23	1	745	1	PPIG	2	170487451	Nonsense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	93694	170487451	72711922	12	32581										
ITGAV	0	genome.wustl.edu	37	chr2	187540546	187540546	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ctaattgttatttccaaacaGaaagaaaatcagaatcattc	4	7	2	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	2	187540546	187540546	G	T	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	splice_site	c.2821-1	e28-1	1.000	-	-	-	no_errors	ITGAV	HGNC	ENSG00000138448	67	0	0	126	55	30.39	-	-	-	T	187540546	G	T	187540546	5	4	284	1	0	0	0	0	0	0	1	0	7942	956	33	2	2981	2	ITGAV	2	187540546	Splice_Site	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	17053095	187540546	55658827	13	32582										
XIRP1	0	genome.wustl.edu	37	chr3	39228482	39228482	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acctgacaccagctcctcctTtcgtatataagggtgcccct	7	15	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	3	39228482	39228482	T	G	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.2455	p.K819Q	0.997	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	117	0	0	29	25	46.3	-	-	-	G	39228482	T	G	39228482	3	3	284	1	0	0	0	0	1	0	0	0	17526	1850	64	5	3080	5	XIRP1	3	39228482	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09		39228482	158793948	14	32583										
IL17RB	0	genome.wustl.edu	37	chr3	53892827	53892827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tctgcccacaaacaggcgtcCctttccctctggataacagt	7	15	2	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	3	53892827	53892827	C	T	SNP	IL17RB	ENST00000288167	human	ensembl	69_37n	1	known	missense	c.829	p.P277S	0.000	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736	73	0	0	4	13	76.47	-	-	-	T	53892827	C	T	53892827	3	4	284	1	0	0	0	0	1	0	0	0	7694	623	22	4	863	4	IL17RB	3	53892827	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	14664345	53892827	144129603	15	32584										
LEPREL1	0	genome.wustl.edu	37	chr3	189711948	189711948	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	attcttcaaatctctgaggcCcctcacatagggtccggcat	8	13	4	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	3	189711948	189711948	C	A	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	missense	c.758	p.G253V	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	144	0	0	190	86	31.16	-	-	-	A	189711948	C	A	189711948	3	1	284	1	0	0	0	0	1	0	0	0	8784	623	22	4	1420	4	LEPREL1	3	189711948	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	135819121	189711948	8310482	16	32585										
CPN2	0	genome.wustl.edu	37	chr3	194062839	194062839	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gcgcgttgttgctcagcttcAgggtctgcaggctggtgagt	16	9	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	3	194062839	194062839	A	T	SNP	CPN2	ENST00000323830	human	ensembl	69_37n	-1	known	missense	c.593	p.L198Q	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772	40	0	0	24	16	40	-	-	-	T	194062839	A	T	194062839	3	4	284	1	0	0	0	0	1	0	0	0	3840	188	7	5	1048	5	CPN2	3	194062839	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	4350891	194062839	3959591	17	32586										
RFC1	0	genome.wustl.edu	37	chr4	39304714	39304714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tatcctcattgcctgccatgCcatctacttcatccatgatg	5	14	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	4	39304714	39304714	C	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.2171	p.G724V	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	335	0	0	119	83	41.09	-	-	-	A	39304714	C	A	39304714	3	1	284	1	0	0	0	0	1	0	0	0	13327	739	26	4	1315	4	RFC1	4	39304714	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09		39304714	151849562	18	32587										
TRIM60	0	genome.wustl.edu	37	chr4	165961479	165961479	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aaacaactccagattaggagGagcaagagaaagaggcagaa	12	6	0	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	4	165961479	165961479	G	A	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	1	known	silent	c.255	p.R85	0.833	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	152	0	0	25	76	75.25	-	-	-	A	165961479	G	A	165961479	2	1	284	1	0	0	0	0	0	0	0	1	16631	1165	41	2		2	TRIM60	4	165961479	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	126656765	165961479	25192797	19	32588										
FASTKD3	0	genome.wustl.edu	37	chr5	7867856	7867856	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tgcttataaaacttagcactTcttctgatgaagtcaagttg	7	7	3	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	5	7867856	7867856	T	A	SNP	FASTKD3	ENST00000264669	human	ensembl	69_37n	-1	known	missense	c.341	p.E114V	0.988	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279	148	0	0	50	50	50	-	-	-	A	7867856	T	A	7867856	3	1	284	1	0	0	0	0	1	0	0	0	5733	1783	62	5	1671	5	FASTKD3	5	7867856	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09		7867856	173047404	20	32589										
GZMA	0	genome.wustl.edu	37	chr5	54398559	54398559	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cctctctctcagttgtcgttTctctcctgctaattcctgaa	5	14	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	5	54398559	54398559	T	C	SNP	GZMA	ENST00000274306	human	ensembl	69_37n	1	known	missense	c.49	p.S17P	0.812	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMA	HGNC	ENSG00000145649	191	0	0	116	82	41.41	-	-	-	C	54398559	T	C	54398559	3	2	284	1	0	0	0	0	1	0	0	0	6966	1783	62	5	51	5	GZMA	5	54398559	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	46530703	54398559	126516701	21	32590										
TRIM23	0	genome.wustl.edu	37	chr5	64913932	64913932	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tttcctacctaggtctgttaCttgtcgatcaaatgggcaac	8	10	2	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	5	64913932	64913932	C	G	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	missense	c.232	p.V78L	1.000	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	102	0	0	7	54	88.52	-	-	-	G	64913932	C	G	64913932	3	3	284	1	0	0	0	0	1	0	0	0	16593	565	20	4	1599	4	TRIM23	5	64913932	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	10515373	64913932	116001328	22	32591										
GPR98	0	genome.wustl.edu	37	chr5	89949195	89949195	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gatatgtcttatattaccaaCttcaccattttgaggcagca	6	9	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	5	89949195	89949195	C	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.3804	p.N1268K	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	134	0	0	15	61	80.26	-	-	-	A	89949195	C	A	89949195	3	1	284	1	0	0	0	0	1	0	0	0	6772	564	20	4	3882	4	GPR98	5	89949195	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	25035263	89949195	90966065	23	32592										
PRRT1	0	genome.wustl.edu	37	chr6	32119594	32119594	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tattgtttttacctgactttTcggatgacatgcctgcggtc	9	9	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	6	32119594	32119594	T	C	SNP	PRRT1	ENST00000211413	human	ensembl	69_37n	-1	known	missense	c.11	p.E4G	0.999	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	PRRT1	HGNC	ENSG00000204314	21	0	0	4	4	50	-	-	-	C	32119594	T	C	32119594	3	2	284	1	0	0	0	0	1	0	0	0	12689	1783	62	5	925	5	PRRT1	6	32119594	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09		32119594	138995473	24	32593										
TRERF1	0	genome.wustl.edu	37	chr6	42231282	42231282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cagtggtggctggggctgagGcggcaggaccttctctcctt	16	11	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	6	42231282	42231282	G	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	missense	c.1660	p.P554T	0.998	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	69	0	0	57	11	16.18	-	-	-	T	42231282	G	T	42231282	3	4	284	1	0	0	0	0	1	0	0	0	16571	1203	42	4	1986	4	TRERF1	6	42231282	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	10111688	42231282	128883785	25	32594										
UBE2J1	0	genome.wustl.edu	37	chr6	90045151	90045151	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cacaacagaaatcttgtgatCtagtagaaaaagatttttta	6	5	2	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	6	90045151	90045151	C	G	SNP	UBE2J1	ENST00000435041	human	ensembl	69_37n	-1	known	splice_site	c.429-1	e6-1	1.000	-	-	-	no_errors	UBE2J1	HGNC	ENSG00000198833	59	0	0	122	35	22.29	-	-	-	G	90045151	C	G	90045151	5	3	284	1	0	0	0	0	0	0	1	0	16957	927	32	2	540	2	UBE2J1	6	90045151	Splice_Site	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	47813869	90045151	81069916	26	32595										
MAP3K5	0	genome.wustl.edu	37	chr6	137019731	137019731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ttcggttgcatgagctctgtCaaccccttcatgaagctgct	9	12	3	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	6	137019731	137019731	C	G	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.702	p.L234F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	141	0	0	89	70	44.03	-	-	-	G	137019731	C	G	137019731	3	3	284	1	0	0	0	0	1	0	0	0	9324	825	29	2	3530	2	MAP3K5	6	137019731	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	46974580	137019731	34095336	27	32596										
STXBP5	0	genome.wustl.edu	37	chr6	147655358	147655358	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gctgcaaatctccaacctctGgtaatttggtttttttttat	6	8	2	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	6	147655358	147655358	G	C	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.2146	p.G716R	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	59	0	0	122	44	26.51	-	-	-	C	147655358	G	C	147655358	3	2	284	1	0	0	0	0	1	0	0	0	15447	1362	47	4	2220	4	STXBP5	6	147655358	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	10635627	147655358	23459709	28	32597										
C1GALT1	0	genome.wustl.edu	37	chr7	7274170	7274170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cagattctagccaacataaaGgtatggtttactttattaag	7	6	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	7274170	7274170	G	A	SNP	C1GALT1	ENST00000223122	human	ensembl	69_37n	1	known	missense	c.220	p.D74N	1.000	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392	148	0	0	115	96	45.5	-	-	-	A	7274170	G	A	7274170	3	1	284	1	0	0	0	0	1	0	0	0	1971	1014	35	4	222	4	C1GALT1	7	7274170	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09		7274170	151864493	29	32598										
SCRN1	0	genome.wustl.edu	37	chr7	30008626	30008626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tttcccaaataccaccagacCatccttagcacgtggaggga	8	13	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	30008626	30008626	C	T	SNP	SCRN1	ENST00000434476	human	ensembl	69_37n	-1	known	missense	c.118	p.G40S	0.967	NULL	pfam_Peptidase_C69	-	no_errors	SCRN1	HGNC	ENSG00000136193	268	0	0	97	72	42.6	-	-	-	T	30008626	C	T	30008626	3	4	284	1	0	0	0	0	1	0	0	0	14026	594	21	4	1214	4	SCRN1	7	30008626	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	22734456	30008626	129130037	30	32599										
BMPER	0	genome.wustl.edu	37	chr7	34097695	34097695	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gagagatgtggtcctctatcAattgtaccatctgtgcttgt	10	8	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	34097695	34097695	A	C	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	missense	c.952	p.N318H	0.997	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	126	0	0	48	39	44.83	-	-	-	C	34097695	A	C	34097695	3	2	284	1	0	0	0	0	1	0	0	0	1473	130	5	5	990	5	BMPER	7	34097695	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	4089069	34097695	125040968	31	32600										
ZNF716	0	genome.wustl.edu	37	chr7	57529139	57529139	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	catactggagagagaccctaCaaatgtgaagaatgtggcaa	11	7	0	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	57529139	57529139	C	A	SNP	ZNF716	ENST00000420713	human	ensembl	69_37n	1	known	nonsense	c.972	p.Y324*	0.036	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111	238	0	0	183	131	41.72	-	-	-	A	57529139	C	A	57529139	4	1	284	1	0	0	0	0	0	1	0	0	18215	489	17	4	986	4	ZNF716	7	57529139	Nonsense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	23431444	57529139	101609524	32	32601										
WBSCR17	0	genome.wustl.edu	37	chr7	71175821	71175821	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cactcctccctgacacccgcTgcctggtggacaactccaag	8	18	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	71175821	71175821	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.1576	p.C526G	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	207	1	0.48	67	53	43.8	-	-	-	G	71175821	T	G	71175821	3	3	284	1	0	0	0	0	1	0	0	0	17361	1580	55	5	1614	5	WBSCR17	7	71175821	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	13646682	71175821	87962842	33	32602										
CYP3A4	0	genome.wustl.edu	37	chr7	99358487	99358487	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gagaagttctgaaggactctGattagagcaagtttcatgtt	11	5	3	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	99358487	99358487	G	T	SNP	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	silent	c.1371	p.I457	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	327	0	0	264	227	46.23	-	-	-	T	99358487	G	T	99358487	2	4	284	1	0	0	0	0	0	0	0	1	4209	1280	45	2		2	CYP3A4	7	99358487	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	28182666	99358487	59780176	34	32603										
PPP1R3A	0	genome.wustl.edu	37	chr7	113519707	113519707	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cttcgtaaacatcccaaatcTtttacttcaatatttttagc	2	10	2	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	113519707	113519707	T	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.1440	p.K480N	0.036	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	292	0	0	178	128	41.69	-	-	-	A	113519707	T	A	113519707	3	1	284	1	0	0	0	0	1	0	0	0	12448	1606	56	5	1932	5	PPP1R3A	7	113519707	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	14161220	113519707	45618956	35	32604										
PPP1R3A	0	genome.wustl.edu	37	chr7	113520011	113520011	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cctttacggagctttctgctGatgaacttggagacagagac	11	9	1	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	113520011	113520011	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.1136	p.S379L	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	500	0	0	305	214	41.23	-	-	-	A	113520011	G	A	113520011	3	1	284	1	0	0	0	0	1	0	0	0	12448	1294	45	2	2236	2	PPP1R3A	7	113520011	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	304	113520011	45618652	36	32605										
PTPRZ1	0	genome.wustl.edu	37	chr7	121659211	121659211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tagccatgagtctcgtattgGtctagctgaggggttggaat	14	6	2	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	7	121659211	121659211	G	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.4877	p.G1626V	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	65	0	0	56	30	34.88	-	-	-	T	121659211	G	T	121659211	3	4	284	1	0	0	0	0	1	0	0	0	12897	1261	44	4	4927	4	PTPRZ1	7	121659211	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	8139200	121659211	37479452	37	32606										
UNC5D	0	genome.wustl.edu	37	chr8	35608123	35608123	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gtgatgtcagtggaagatgaAtctacatcctgttactgcct	10	8	2	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	35608123	35608123	A	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1959	p.E653D	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	233	0	0	135	100	42.55	-	-	-	T	35608123	A	T	35608123	3	4	284	1	0	0	0	0	1	0	0	0	17092	98	4	5	2009	5	UNC5D	8	35608123	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09		35608123	110755899	38	32607										
KCNU1	0	genome.wustl.edu	37	chr8	36768470	36768470	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	atgtgcactttattctggagAcctccatgcggccaacatag	9	11	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	36768470	36768470	A	T	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.2354	p.D785V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	149	0	0	105	61	35.67	-	-	-	T	36768470	A	T	36768470	3	4	284	1	0	0	0	0	1	0	0	0	8147	275	10	5	2440	5	KCNU1	8	36768470	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	1160347	36768470	109595552	39	32608										
MCM4	0	genome.wustl.edu	37	chr8	48883292	48883292	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tacgtaatgaaagaccctgaGacaaggcagctggtcctgca	11	10	0	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	48883292	48883292	G	A	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	silent	c.1656	p.E552	1.000	pfam_MCM_DNA-dep_ATPase,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	118	1	0.84	42	46	52.27	-	-	-	A	48883292	G	A	48883292	2	1	284	1	0	0	0	0	0	0	0	1	9460	933	33	2		2	MCM4	8	48883292	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	12114822	48883292	97480730	40	32609										
VCPIP1	0	genome.wustl.edu	37	chr8	67547576	67547576	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aaggttttgccaggcagatgTggaaaagtacaatgcttgcc	12	7	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	67547576	67547576	T	C	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	silent	c.2829	p.P943	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	162	0	0	126	73	36.14	-	-	-	C	67547576	T	C	67547576	2	2	284	1	0	0	0	0	0	0	0	1	17238	1683	59	5		5	VCPIP1	8	67547576	Silent	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	18664284	67547576	78816446	41	32610										
LRRCC1	0	genome.wustl.edu	37	chr8	86053669	86053669	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	atgcctttaaaagacaagttGatgcaattgttgaagctcat	8	6	1	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	86053669	86053669	G	C	SNP	LRRCC1	ENST00000360375	human	ensembl	69_37n	1	known	missense	c.2893	p.D965H	0.991	superfamily_Prefoldin	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	73	0	0	44	28	38.89	-	-	-	C	86053669	G	C	86053669	3	2	284	1	0	0	0	0	1	0	0	0	9092	1290	45	2	2963	2	LRRCC1	8	86053669	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	18506093	86053669	60310353	42	32611										
KCNS2	0	genome.wustl.edu	37	chr8	99441462	99441462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agttctcccacttttaccggCgccaaaagcaacttgagagt	8	12	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	99441462	99441462	C	T	SNP	KCNS2	ENST00000287042	human	ensembl	69_37n	1	known	missense	c.1255	p.R419C	1.000	prints_K_chnl_volt-dep_Kv2	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486	175	0	0	26	19	42.22	-	-	-	T	99441462	C	T	99441462	3	4	284	1	0	0	0	0	1	0	0	0	8143	768	27	1	1257	1	KCNS2	8	99441462	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	13387793	99441462	46922560	43	32612										
PABPC1	0	genome.wustl.edu	37	chr8	101717869	101717869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gatgccaacatggaagcagtCaaaggttcctgaccttgtac	10	10	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	101717869	101717869	C	G	SNP	PABPC1	ENST00000318607	human	ensembl	69_37n	-1	known	missense	c.1635	p.L545F	1.000	pfam_PABP_HYD,superfamily_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756	98	0	0	49	35	41.67	-	-	-	G	101717869	C	G	101717869	3	3	284	1	0	0	0	0	1	0	0	0	11436	825	29	2	287	2	PABPC1	8	101717869	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	2276407	101717869	44646153	44	32613										
COL14A1	0	genome.wustl.edu	37	chr8	121170400	121170400	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acaaggttaagatataatgtAatatctcatgacagtataca	6	5	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	121170400	121170400	A	G	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	silent	c.120	p.V40	0.029	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	83	0	0	127	55	30.22	-	-	-	G	121170400	A	G	121170400	2	3	284	1	0	0	0	0	0	0	0	1	3701	349	13	5		5	COL14A1	8	121170400	Silent	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	19452531	121170400	25193622	45	32614										
DENND3	0	genome.wustl.edu	37	chr8	142146809	142146809	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agtggaagggcctcccggggCcccccagagcgccagagcct	15	16	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	8	142146809	142146809	C	G	SNP	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	missense	c.64	p.P22A	0.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	16	0	0	11	4	26.67	-	-	-	G	142146809	C	G	142146809	3	3	284	1	0	0	0	0	1	0	0	0	4468	739	26	4	66	4	DENND3	8	142146809	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	20976409	142146809	4217213	46	32615										
TLN1	0	genome.wustl.edu	37	chr9	35698399	35698399	+	Frame_Shift_Del	DEL	A	A	-													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gctgggctgtggaggcagctAcctgcttggctgatgagatg							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	35698399	35698399	A	-	DEL	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	frame_shift_del	c.7292	p.V2431fs	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	34	0	0	14	6	30	-	-	-	-	35698399	A	-	35698399	7	5	284	1	0	1	0	1	0	0	0	0	16042	391	14	0	345	0	TLN1	9	35698399	Frame_Shift_Del	DEL	A	TCGA-AN-A0AR-01A-11W-A019-09		35698399	105515032	47	32616										
ZCCHC6	0	genome.wustl.edu	37	chr9	88932177	88932177	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gctaattcttcaatagttctGacacagtccaatccctacaa	4	12	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	88932177	88932177	G	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	silent	c.3231	p.V1077	0.966	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	146	0	0	114	19	14.29	-	-	-	C	88932177	G	C	88932177	2	2	284	1	0	0	0	0	0	0	0	1	17688	1277	45	2		2	ZCCHC6	9	88932177	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	53233778	88932177	52281254	48	32617										
FKBP15	0	genome.wustl.edu	37	chr9	115983521	115983521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tcctcgtcccccgcaccgaaCattgcgttggctttcaccgg	9	17	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	115983521	115983521	C	T	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	10	0	0	2	9	81.82	-	-	-	T	115983521	C	T	115983521	3	4	284	1	0	0	0	0	1	0	0	0	5951	478	17	4	3768	4	FKBP15	9	115983521	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	27051344	115983521	25229910	49	32618										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123280815	123280815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ctcctgggtgatcttcttaaTgcttctacgcagtctgtggt	10	10	4	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	123280815	123280815	T	G	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.1201	p.I401L	0.006	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	257	0	0	147	117	44.32	-	-	-	G	123280815	T	G	123280815	3	3	284	1	0	0	0	0	1	0	0	0	3175	1464	51	5	4588	5	CDK5RAP2	9	123280815	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	7297294	123280815	17932616	50	32619										
DENND1A	0	genome.wustl.edu	37	chr9	126371761	126371761	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tgaggtagggcatgggagcaCtgtgaagagaaacagagaca	16	5	0	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	126371761	126371761	C	G	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	splice_site	c.624-1	e9-1	1.000	-	-	-	no_errors	DENND1A	HGNC	ENSG00000119522	123	0	0	58	44	43.14	-	-	-	G	126371761	C	G	126371761	5	3	284	1	0	0	0	0	0	0	1	0	4462	579	20	4	2465	4	DENND1A	9	126371761	Splice_Site	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	3090946	126371761	14841670	51	32620										
FCN2	0	genome.wustl.edu	37	chr9	137774483	137774483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggcaggcaccaatggaaagaGaggtaggtgcaggcatggct	17	7	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	9	137774483	137774483	G	C	SNP	FCN2	ENST00000291744	human	ensembl	69_37n	1	known	missense	c.212	p.R71T	0.043	pfam_Collagen	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN2	HGNC	ENSG00000160339	28	0	0	15	9	37.5	-	-	-	C	137774483	G	C	137774483	3	2	284	1	0	0	0	0	1	0	0	0	5838	942	33	2	218	2	FCN2	9	137774483	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	11402722	137774483	3438948	52	32621										
FBXO18	0	genome.wustl.edu	37	chr10	5951233	5951233	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gcgtgtgtgcggcaacacctCcccgacctctacgctgctgc	11	17	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	5951233	5951233	C	A	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	silent	c.1149	p.L383	0.161	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	63	0	0	50	17	25.37	-	-	-	A	5951233	C	A	5951233	2	1	284	1	0	0	0	0	0	0	0	1	5777	842	30	2		2	FBXO18	10	5951233	Silent	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09		5951233	129583514	53	32622										
TAF3	0	genome.wustl.edu	37	chr10	8055756	8055756	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tgtaacaagcctgacgatggGagtcccatgattgggtgtga	14	7	0	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	8055756	8055756	G	A	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	silent	c.2631	p.G877	0.244	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	124	0	0	189	27	12.5	-	-	-	A	8055756	G	A	8055756	2	1	284	1	0	0	0	0	0	0	0	1	15617	1161	41	2		2	TAF3	10	8055756	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	2104523	8055756	127478991	54	32623										
MAP3K8	0	genome.wustl.edu	37	chr10	30728142	30728142	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tgcttttgcaaaccatatatCcaacactgcaaagcattttt	4	10	0	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	30728142	30728142	C	G	SNP	MAP3K8	ENST00000263056	human	ensembl	69_37n	1	known	missense	c.275	p.S92C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	149	0	0	118	50	29.76	-	-	-	G	30728142	C	G	30728142	3	3	284	1	0	0	0	0	1	0	0	0	9327	855	30	2	277	2	MAP3K8	10	30728142	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	22672386	30728142	104806605	55	32624										
CCAR1	0	genome.wustl.edu	37	chr10	70531055	70531055	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ctgtctcttcctgagaaagaGgacaaaaaagaaaaggataa	9	6	1	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	70531055	70531055	G	C	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.2391	p.E797D	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	131	0	0	188	157	45.51	-	-	-	C	70531055	G	C	70531055	3	2	284	1	0	0	0	0	1	0	0	0	2755	991	35	4	2457	4	CCAR1	10	70531055	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	39802913	70531055	65003692	56	32625										
ADK	0	genome.wustl.edu	37	chr10	75960544	75960544	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aaaatattctctttggaatgGgaaatcctctgcttgacatc	7	8	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	75960544	75960544	G	T	SNP	ADK	ENST00000286621	human	ensembl	69_37n	1	known	nonsense	c.88	p.G30*	1.000	NULL	pfam_PfkB,prints_Adenokinase	-	no_errors	ADK	HGNC	ENSG00000156110	69	0	0	14	67	82.72	-	-	-	T	75960544	G	T	75960544	4	4	284	1	0	0	0	0	0	1	0	0	320	1233	43	4	112	4	ADK	10	75960544	Nonsense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	5429489	75960544	59574203	57	32626										
CPEB3	0	genome.wustl.edu	37	chr10	93952303	93952303	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	actgggagggtagtgtttacCtttcagaggttcatgatcag	13	6	3	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	93952303	93952303	C	G	SNP	CPEB3	ENST00000265997	human	ensembl	69_37n	-1	known	missense	c.1096	p.G366R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB3	HGNC	ENSG00000107864	173	0	0	101	190	65.07	-	-	-	G	93952303	C	G	93952303	3	3	284	1	0	0	0	0	1	0	0	0	3832	695	24	4	1059	4	CPEB3	10	93952303	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	17991759	93952303	41582444	58	32627										
HPSE2	0	genome.wustl.edu	37	chr10	100904059	100904059	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agaagaaccagatgcatctgAgctgccttctccctttggag	10	11	2	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	100904059	100904059	A	G	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	silent	c.546	p.A182	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	293	0	0	239	96	28.66	-	-	-	G	100904059	A	G	100904059	2	3	284	1	0	0	0	0	0	0	0	1	7396	291	11	5		5	HPSE2	10	100904059	Silent	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	6951756	100904059	34630688	59	32628										
ENTPD7	0	genome.wustl.edu	37	chr10	101451204	101451204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gaaggacagtagggatactgGatatgggaggagcctctctc	15	7	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	101451204	101451204	G	T	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.772	p.D258Y	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	101	0	0	67	83	54.97	-	-	-	T	101451204	G	T	101451204	3	4	284	1	0	0	0	0	1	0	0	0	5181	1174	41	2	798	2	ENTPD7	10	101451204	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	547145	101451204	34083543	60	32629										
TRUB1	0	genome.wustl.edu	37	chr10	116710862	116710862	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ttgatttgtagttgttggaaTtggaagcggaacaaaaatgt	12	2	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	10	116710862	116710862	T	A	SNP	TRUB1	ENST00000298746	human	ensembl	69_37n	1	known	missense	c.395	p.I132N	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832	267	0	0	209	365	63.59	-	-	-	A	116710862	T	A	116710862	3	1	284	1	0	0	0	0	1	0	0	0	16698	1493	52	5	405	5	TRUB1	10	116710862	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	15259658	116710862	18823885	61	32630										
OR52A1	0	genome.wustl.edu	37	chr11	5173461	5173461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agatttgatgatgctcagaaGcaaggaatttccaatcatag	9	6	2	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	5173461	5173461	G	T	SNP	OR52A1	ENST00000328942	human	ensembl	69_37n	-1	known	missense	c.139	p.L47I	0.284	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52A1	HGNC	ENSG00000182070	124	0	0	16	67	80.72	-	-	-	T	5173461	G	T	5173461	3	4	284	1	0	0	0	0	1	0	0	0	11181	971	34	4	801	4	OR52A1	11	5173461	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09		5173461	129833055	62	32631										
FAM111A	0	genome.wustl.edu	37	chr11	58919851	58919853	+	In_Frame_Del	DEL	ATG	ATG	-													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	atttctttcctttctggagaAtgatgattggaaactcattg							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	58919851	58919853	ATG	-	DEL	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	in_frame_del	c.710_712	p.D239in_frame_del	0.003:0.000:0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	318	0	0	147	102	40.96	-	-	-	-	58919853	ATG	-	58919851	7	5	284	1	0	1	0	1	0	0	0	0	5439	101	4	0	716	0	FAM111A	11	58919851	In_Frame_Del	DEL	ATG	TCGA-AN-A0AR-01A-11W-A019-09	53746390	58919851	76086665	63	32632										
OR4D6	0	genome.wustl.edu	37	chr11	59224890	59224890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tggcttcttgggtgagtggtGgtttgcattcaatcatccag	13	7	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	59224890	59224890	G	T	SNP	OR4D6	ENST00000300127	human	ensembl	69_37n	1	known	missense	c.457	p.G153C	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	362	0	0	221	177	44.47	-	-	-	T	59224890	G	T	59224890	3	4	284	1	0	0	0	0	1	0	0	0	11131	1348	47	4	459	4	OR4D6	11	59224890	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	305039	59224890	75781626	64	32633										
SLC22A6	0	genome.wustl.edu	37	chr11	62747289	62747289	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	caggccggcgacccagggagTtgatgacaaggaagcccaca	14	12	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	62747289	62747289	T	A	SNP	SLC22A6	ENST00000377871	human	ensembl	69_37n	-1	known	missense	c.1169	p.N390I	0.992	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901	89	0	0	48	37	42.05	-	-	-	A	62747289	T	A	62747289	3	1	284	1	0	0	0	0	1	0	0	0	14547	1725	60	5	538	5	SLC22A6	11	62747289	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	3522399	62747289	72259227	65	32634										
NPAS4	0	genome.wustl.edu	37	chr11	66192385	66192385	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggactccaacctgtccctgtCaggggcaggcccccctgtgc	12	17	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	66192385	66192385	C	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	nonsense	c.2024	p.S675*	0.177	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	165	0	0	36	21	36.84	-	-	-	A	66192385	C	A	66192385	4	1	284	1	0	0	0	0	0	1	0	0	10637	838	29	2	2050	2	NPAS4	11	66192385	Nonsense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	3445096	66192385	68814131	66	32635										
GRM5	0	genome.wustl.edu	37	chr11	88780577	88780577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gcaaattctggacctgaatgGctacagaactggagccaggc	12	10	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	88780577	88780577	G	A	SNP	GRM5	ENST00000305447	human	ensembl	69_37n	-1	known	missense	c.464	p.A155V	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1	-	no_errors	GRM5	HGNC	ENSG00000168959	129	0	0	143	44	23.53	-	-	-	A	88780577	G	A	88780577	3	1	284	1	0	0	0	0	1	0	0	0	6851	1203	42	4	3210	4	GRM5	11	88780577	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	22588192	88780577	46225939	67	32636										
HEPHL1	0	genome.wustl.edu	37	chr11	93839282	93839282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccatccattatcatgctgagAgctttcttttcaaagtaagt	6	9	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	93839282	93839282	A	G	SNP	HEPHL1	ENST00000315765	human	ensembl	69_37n	1	known	missense	c.3031	p.S1011G	1.000	pfam_Cu-oxidase_2,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	316	0	0	221	289	56.67	-	-	-	G	93839282	A	G	93839282	3	3	284	1	0	0	0	0	1	0	0	0	7106	304	11	5	3097	5	HEPHL1	11	93839282	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	5058705	93839282	41167234	68	32637										
DYNC2H1	0	genome.wustl.edu	37	chr11	103014002	103014002	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tctttctttaaataggaatgGattgtaattgggcaagttga	10	3	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	11	103014002	103014002	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.2580	p.W860C	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	241	0	0	197	272	58	-	-	-	T	103014002	G	T	103014002	3	4	284	1	0	0	0	0	1	0	0	0	4881	1183	41	2	2650	2	DYNC2H1	11	103014002	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	9174720	103014002	31992514	69	32638										
KDM5A	0	genome.wustl.edu	37	chr12	493214	493214	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	caccttgctcaaagcatacaGatccaggatttttctctcta	5	12	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	493214	493214	G	T	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.349	p.L117M	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	271	0	0	213	76	26.3	-	-	-	T	493214	G	T	493214	3	4	284	1	0	0	0	0	1	0	0	0	8186	933	33	2	4827	2	KDM5A	12	493214	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09		493214	133358681	70	32639										
B4GALNT3	0	genome.wustl.edu	37	chr12	661326	661326	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggaaaacgcctactaccaagAccggtgagagacactgagtg	12	10	0	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	661326	661326	A	T	SNP	B4GALNT3	ENST00000266383	human	ensembl	69_37n	1	known	missense	c.1205	p.D402V	1.000	NULL	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044	49	0	0	47	7	12.73	-	-	-	T	661326	A	T	661326	3	4	284	1	0	0	0	0	1	0	0	0	1272	275	10	5	1251	5	B4GALNT3	12	661326	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	168112	661326	133190569	71	32640										
CD163L1	0	genome.wustl.edu	37	chr12	7556211	7556211	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	atgtgcagtcccagagagctGactcattcccagtgcaagat	10	11	1	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	7556211	7556211	G	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	nonsense	c.1328	p.S443*	0.989	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	323	0	0	600	148	19.76	-	-	-	T	7556211	G	T	7556211	4	4	284	1	0	0	0	0	0	1	0	0	2997	1294	45	2	3089	2	CD163L1	12	7556211	Nonsense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	6894885	7556211	126295684	72	32641										
GDF3	0	genome.wustl.edu	37	chr12	7842748	7842748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acttgtgccaacccaggtccCggaagttaatgaatagctgg	11	10	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	7842748	7842748	C	T	SNP	GDF3	ENST00000329913	human	ensembl	69_37n	-1	known	missense	c.821	p.R274Q	0.891	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344	122	0	0	241	126	34.24	-	-	-	T	7842748	C	T	7842748	3	4	284	1	0	0	0	0	1	0	0	0	6367	652	23	1	277	1	GDF3	12	7842748	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	286537	7842748	126009147	73	32642										
PLCZ1	0	genome.wustl.edu	37	chr12	18852835	18852835	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ttttgaatttctcagctttcGtataaatgacaagatcagat	6	6	2	4			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	18852835	18852835	G	C	SNP	PLCZ1	ENST00000540270	human	ensembl	69_37n	-1	known	nonsense	c.681	p.Y227*	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCZ1	HGNC	ENSG00000139151	108	0	0	91	62	40.52	-	-	-	C	18852835	G	C	18852835	4	2	284	1	0	0	0	0	0	1	0	0	12118	1145	40	3	783	3	PLCZ1	12	18852835	Nonsense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	11010087	18852835	114999060	74	32643										
PDE3A	0	genome.wustl.edu	37	chr12	20807084	20807084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gatgacccagaagaagaggaGgaagaagcaccagcaccaaa	12	9	0	5			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	20807084	20807084	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.3129	p.E1043	0.998	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	298	0	0	194	137	41.39	-	-	-	A	20807084	G	A	20807084	2	1	284	1	0	0	0	0	0	0	0	1	11710	991	35	4		4	PDE3A	12	20807084	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	1954249	20807084	113044811	75	32644										
ABCC9	0	genome.wustl.edu	37	chr12	22028614	22028614	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gaattcgaatatctatattgGataatgtagctaaaccactg	7	6	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	22028614	22028614	G	C	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.2066	p.S689C	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	159	0	0	125	20	13.79	-	-	-	C	22028614	G	C	22028614	3	2	284	1	0	0	0	0	1	0	0	0	59	1174	41	2	2821	2	ABCC9	12	22028614	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	1221530	22028614	111823281	76	32645										
TROAP	0	genome.wustl.edu	37	chr12	49717740	49717740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acaaagattggtggggatcaGtcagcctcggaaccccttgg	13	10	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	49717740	49717740	G	T	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	missense	c.257	p.S86I	0.015	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	244	1	0.41	25	87	77.68	-	-	-	T	49717740	G	T	49717740	3	4	284	1	0	0	0	0	1	0	0	0	16671	1029	36	4	263	4	TROAP	12	49717740	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	27689126	49717740	84134155	77	32646										
SP1	0	genome.wustl.edu	37	chr12	53776045	53776045	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acaactttcacagggtgccaAtggctggcagatcatctctt	9	11	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	53776045	53776045	A	G	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.314	p.N105S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	84	0	0	0	13	100	-	-	-	G	53776045	A	G	53776045	3	3	284	1	0	0	0	0	1	0	0	0	15048	101	4	5	324	5	SP1	12	53776045	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	4058305	53776045	80075850	78	32647										
TRHDE	0	genome.wustl.edu	37	chr12	73014965	73014965	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aattttaatggatctcttgtTcaagcatcctaccaacatga	5	9	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	73014965	73014965	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	silent	c.2412	p.V804	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	155	0	0	119	85	41.67	-	-	-	C	73014965	T	C	73014965	2	2	284	1	0	0	0	0	0	0	0	1	16575	1770	62	5		5	TRHDE	12	73014965	Silent	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	19238920	73014965	60836930	79	32648										
OAS2	0	genome.wustl.edu	37	chr12	113440772	113440772	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	acgaccccaggccaccttctGgataagttcatcaaggagtt	9	12	3	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	113440772	113440772	G	C	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	silent	c.1044	p.L348	0.085	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	551	0	0	62	404	86.7	-	-	-	C	113440772	G	C	113440772	2	2	284	1	0	0	0	0	0	0	0	1	10873	1335	47	4		4	OAS2	12	113440772	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	40425807	113440772	20411123	80	32649										
KDM2B	0	genome.wustl.edu	37	chr12	121878934	121878934	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	atattggtccagctgaggtcGagggagacgggctgtcgccg	17	9	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	121878934	121878934	G	T	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	silent	c.3387	p.L1129	0.984	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	54	0	0	9	6	40	-	-	-	T	121878934	G	T	121878934	2	4	284	1	0	0	0	0	0	0	0	1	8179	1045	37	3		3	KDM2B	12	121878934	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	8438162	121878934	11972961	81	32650										
TMEM132B	0	genome.wustl.edu	37	chr12	125834179	125834179	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccattcttcatctaccgagcCaggacaccccctattatcaa	4	16	4	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	125834179	125834179	C	G	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	silent	c.234	p.A78	0.996	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	363	0	0	226	141	38.32	-	-	-	G	125834179	C	G	125834179	2	3	284	1	0	0	0	0	0	0	0	1	16141	581	21	4		4	TMEM132B	12	125834179	Silent	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	3955245	125834179	8017716	82	32651										
GALNT9	0	genome.wustl.edu	37	chr12	132685675	132685675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gggggaggtgctacctctccGtacgtgagggtgttgttgta	17	7	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	12	132685675	132685675	G	A	SNP	GALNT9	ENST00000411988	human	ensembl	69_37n	-1	novel	missense	c.712	p.R238W	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GALNT9	HGNC	ENSG00000182870	40	0	0	3	4	57.14	-	-	-	A	132685675	G	A	132685675	3	1	284	1	0	0	0	0	1	0	0	0	6270	1140	40	1	432	1	GALNT9	12	132685675	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	6851496	132685675	1166220	83	32652										
TNFRSF19	0	genome.wustl.edu	37	chr13	24243187	24243187	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aactatgagaagccagctagAtcaggagagtggtgctgtca	13	7	2	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	13	24243187	24243187	A	T	SNP	TNFRSF19	ENST00000382258	human	ensembl	69_37n	1	known	missense	c.1196	p.D399V	0.000	NULL	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_19	-	no_errors	TNFRSF19	HGNC	ENSG00000127863	80	0	0	73	90	55.21	-	-	-	T	24243187	A	T	24243187	3	4	284	1	0	0	0	0	1	0	0	0	16387	333	12	5	1226	5	TNFRSF19	13	24243187	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09		24243187	90926691	84	32653										
RABGGTA	0	genome.wustl.edu	37	chr14	24736910	24736910	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cacctcggcatactccatctTgagcacgctattctccagca	6	16	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	14	24736910	24736910	T	G	SNP	RABGGTA	ENST00000216840	human	ensembl	69_37n	-1	known	missense	c.1309	p.K437Q	1.000	NULL	pfam_Prenyl_trans_a,pfam_RabGGT_asu_insert-domain,pfam_Leu-rich_rpt,superfamily_RabGGT_asu_insert-domain,pfscan_Prenyl_trans_a	-	no_errors	RABGGTA	HGNC	ENSG00000100949	78	0	0	15	12	44.44	-	-	-	G	24736910	T	G	24736910	3	3	284	1	0	0	0	0	1	0	0	0	13050	1821	63	5	410	5	RABGGTA	14	24736910	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09		24736910	82612630	85	32654										
BMP4	0	genome.wustl.edu	37	chr14	54417573	54417573	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agaggaaacgaaaagcagagTtttcactggtccctgggatg	13	7	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	14	54417573	54417573	T	A	SNP	BMP4	ENST00000245451	human	ensembl	69_37n	-1	known	missense	c.404	p.N135I	0.896	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378	266	0	0	54	52	48.15	-	-	-	A	54417573	T	A	54417573	3	1	284	1	0	0	0	0	1	0	0	0	1467	1725	60	5	826	5	BMP4	14	54417573	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09	29680663	54417573	52931967	86	32655										
MAP1A	0	genome.wustl.edu	37	chr15	43818728	43818728	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	caataggtattggaggggcaGagaggatgtggccttggaac	17	5	0	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	15	43818728	43818728	G	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.5057	p.R1686T	0.039	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	111	0	0	14	72	83.72	-	-	-	C	43818728	G	C	43818728	3	2	284	1	0	0	0	0	1	0	0	0	9298	942	33	2	5059	2	MAP1A	15	43818728	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09		43818728	58712664	87	32656										
NR2E3	0	genome.wustl.edu	37	chr15	72106381	72106381	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggcctgaaggatcctgagcaCgtagaggccttgcaggacca	14	11	0	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	15	72106381	72106381	C	T	SNP	NR2E3	ENST00000326995	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.744	-	-	-	no_errors	NR2E3	HGNC	ENSG00000031544	48	0	0	2	6	75	-	-	-	T	72106381	C	T	72106381	1	4	284	0	1	0	0	0	0	0	0	0	10699	535	19	1		1	NR2E3	15	72106381	RNA	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	28287653	72106381	30425011	88	32657										
CREBBP	0	genome.wustl.edu	37	chr16	3778897	3778898	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tgcacgctgggcatccggggINScccagccacggccgcctggg							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	16	3778897	3778898	-	C	INS	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6151_6150	p.P2050fs	1.000:1.000	pfam_Nuc_rcpt_coact_CREBbp	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	18	0	0	4	2	33.33	-	-	-	C	3778898	-	C	3778897	7	5	284	1	0	1	1	0	0	0	0	0	3891	1203	42	0	1181	0	CREBBP	16	3778897	Frame_Shift_Ins	INS	-	TCGA-AN-A0AR-01A-11W-A019-09		3778897	86575856	89	32658										
ABCC1	0	genome.wustl.edu	37	chr16	16146590	16146590	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tccttccttagaatctgggcCcttccgtcctggctggagtg	11	13	1	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	16	16146590	16146590	C	G	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.1390	p.P464A	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	109	0	0	53	40	43.01	-	-	-	G	16146590	C	G	16146590	3	3	284	1	0	0	0	0	1	0	0	0	49	623	22	4	1432	4	ABCC1	16	16146590	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	12367693	16146590	74208163	90	32659										
ACADVL	0	genome.wustl.edu	37	chr17	7127320	7127320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agcgtgtgctccgagatcttCgcatcttccggatctttgag	11	11	3	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	17	7127320	7127320	C	T	SNP	ACADVL	ENST00000356839	human	ensembl	69_37n	1	known	missense	c.1366	p.R456C	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADVL	HGNC	ENSG00000072778	51	0	0	7	7	50	-	-	-	T	7127320	C	T	7127320	3	4	284	1	0	0	0	0	1	0	0	0	116	884	31	1	1420	1	ACADVL	17	7127320	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09		7127320	74067890	91	32660										
TP53	0	genome.wustl.edu	37	chr17	7578416	7578419	+	Frame_Shift_Del	DEL	CCTC	CCTC	-													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gtgggggcagcgcctcacaaCctccgtcatgtgctgtgact							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CCTC	CCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	17	7578416	7578419	CCTC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.514_511	p.E171fs	1.000:1.000:1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	122	0	0	20	88	80.73	-	-	-	-	7578419	CCTC	-	7578416	7	5	284	1	0	1	0	1	0	0	0	0	16477	507	18	0	784	0	TP53	17	7578416	Frame_Shift_Del	DEL	CCTC	TCGA-AN-A0AR-01A-11W-A019-09	451096	7578416	73616794	92	32661										
C17orf53	0	genome.wustl.edu	37	chr17	42225520	42225520	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ggattggcaatcagagaagaGtgacagtgacagaagtgctc	14	6	1	5			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	17	42225520	42225520	G	C	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	missense	c.349	p.V117L	0.013	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319	332	0	0	38	105	73.43	-	-	-	C	42225520	G	C	42225520	3	2	284	1	0	0	0	0	1	0	0	0	1877	1029	36	4	359	4	C17orf53	17	42225520	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	34647104	42225520	38969690	93	32662										
USP36	0	genome.wustl.edu	37	chr17	76795831	76795831	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cgctctccattccaagacacAggaggggcctggctcagccc	11	16	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	17	76795831	76795831	A	T	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	silent	c.3042	p.P1014	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	132	0	0	34	16	32	-	-	-	T	76795831	A	T	76795831	2	4	284	1	0	0	0	0	0	0	0	1	17164	175	7	5		5	USP36	17	76795831	Silent	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	34570311	76795831	4399379	94	32663										
EPB41L3	0	genome.wustl.edu	37	chr18	5406867	5406867	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aaagcctcttctcccattcaTtcgttacggcagtgtctgtt	7	12	4	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	18	5406867	5406867	T	C	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.2258	p.N753S	0.857	pirsf_Band_41_protein,pfam_SAB	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	129	0	0	61	11	15.28	-	-	-	C	5406867	T	C	5406867	3	2	284	1	0	0	0	0	1	0	0	0	5191	1493	52	5	1033	5	EPB41L3	18	5406867	Missense_Mutation	SNP	T	TCGA-AN-A0AR-01A-11W-A019-09		5406867	72670381	95	32664										
FBN3	0	genome.wustl.edu	37	chr19	8130918	8130919	+	Frame_Shift_Del	DEL	GT	GT	-													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tcaccacctccagccggtagGttccaggccccggccgcctc							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	19	8130918	8130919	GT	-	DEL	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_del	c.8315_8314	p.T2772fs	0.972:0.962	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	18	0	0	6	3	33.33	-	-	-	-	8130919	GT	-	8130918	7	5	284	1	0	1	0	1	0	0	0	0	5750	1261	44	0	118	0	FBN3	19	8130918	Frame_Shift_Del	DEL	GT	TCGA-AN-A0AR-01A-11W-A019-09		8130918	50998065	96	32665										
FXYD5	0	genome.wustl.edu	37	chr19	35655126	35655126	+	Frame_Shift_Del	DEL	C	C	-													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	agcacagacgtccagacagaCccccagaccctcaagccatc							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	19	35655126	35655126	C	-	DEL	FXYD5	ENST00000342879	human	ensembl	69_37n	1	known	frame_shift_del	c.360	p.Q122fs	0.002	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD5	HGNC	ENSG00000089327	131	0	0	58	33	35.48	-	-	-	-	35655126	C	-	35655126	7	5	284	1	0	1	0	1	0	0	0	0	6170	506	18	0	378	0	FXYD5	19	35655126	Frame_Shift_Del	DEL	C	TCGA-AN-A0AR-01A-11W-A019-09	27524208	35655126	23473857	97	32666										
FCGBP	0	genome.wustl.edu	37	chr19	40392008	40392008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	aggttcctacctcatagtagGcaccattgtggtagcagcca	10	11	1	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	19	40392008	40392008	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.8378	p.A2793V	0.014	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	43	0	0	25	3	10.71	-	-	-	A	40392008	G	A	40392008	3	1	284	1	0	0	0	0	1	0	0	0	5824	1203	42	4	7919	4	FCGBP	19	40392008	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	4736882	40392008	18736975	98	32667										
QPCTL	0	genome.wustl.edu	37	chr19	46196806	46196806	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gcagcccgggaaatctccaaGtcagaaaggtaaagggaccc	12	11	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	19	46196806	46196806	G	C	SNP	QPCTL	ENST00000012049	human	ensembl	69_37n	1	known	missense	c.343	p.V115L	1.000	NULL	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478	90	0	0	28	28	50	-	-	-	C	46196806	G	C	46196806	3	2	284	1	0	0	0	0	1	0	0	0	12958	1029	36	4	349	4	QPCTL	19	46196806	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	5804798	46196806	12932177	99	32668										
KIR2DS4	0	genome.wustl.edu	37	chr19	55350924	55350924	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	tctcagcccagccgggccccAcggttcaggcaggagagaat	13	14	2	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	19	55350924	55350924	A	G	SNP	KIR2DS4	ENST00000339924	human	ensembl	69_37n	1	known	missense	c.412	p.T138A	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIR2DS4	HGNC	ENSG00000221957	1116	6	0.52	537	377	40.02	-	-	-	G	55350924	A	G	55350924	3	3	284	1	0	0	0	0	1	0	0	0	8372	159	6	5	426	5	KIR2DS4	19	55350924	Missense_Mutation	SNP	A	TCGA-AN-A0AR-01A-11W-A019-09	9154118	55350924	3778059	100	32669										
SNPH	0	genome.wustl.edu	37	chr20	1276924	1276925	+	Frame_Shift_Ins	INS	-	-	C													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	gagaggatgacgtggcctggINScccggccctttctgcgggcc							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	20	1276924	1276925	-	C	INS	SNPH	ENST00000381867	human	ensembl	69_37n	1	known	frame_shift_ins	c.41_42	p.A16fs	0.967:0.968	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298	11	0	0	2	2	50	-	-	-	C	1276925	-	C	1276924	7	5	284	1	0	1	1	0	0	0	0	0	14939	1218	42	0		0	SNPH	20	1276924	Frame_Shift_Ins	INS	-	TCGA-AN-A0AR-01A-11W-A019-09		1276924	61748596	101	32670										
LPIN3	0	genome.wustl.edu	37	chr20	39980756	39980756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cagcagtcagaagtccctgaGggaccccaaccctgaacatg	10	14	1	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	20	39980756	39980756	G	A	SNP	LPIN3	ENST00000373257	human	ensembl	69_37n	1	known	missense	c.1259	p.R420K	0.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793	164	0	0	51	39	43.33	-	-	-	A	39980756	G	A	39980756	3	1	284	1	0	0	0	0	1	0	0	0	8986	1000	35	4	1289	4	LPIN3	20	39980756	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	38703832	39980756	23044764	102	32671										
TSHZ2	0	genome.wustl.edu	37	chr20	51872574	51872574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	cttctgattctacaagcccaGtttgcctcgagcctcttcca	6	15	3	1			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	20	51872574	51872574	G	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.2577	p.Q859H	1.000	superfamily_Homeodomain-like,smart_Homeodomain	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	282	0	0	29	119	80.41	-	-	-	T	51872574	G	T	51872574	3	4	284	1	0	0	0	0	1	0	0	0	16720	1020	36	4	2583	4	TSHZ2	20	51872574	Missense_Mutation	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	11891818	51872574	11152946	103	32672										
POTEH	0	genome.wustl.edu	37	chr22	16277842	16277842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ttgctcaagtagaaggctgaCtatacttgccgatccacaac	8	11	1	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	22	16277842	16277842	C	T	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	missense	c.1072	p.V358I	0.059	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	21	0	0	27	6	18.18	-	-	-	T	16277842	C	T	16277842	3	4	284	1	0	0	0	0	1	0	0	0	12341	565	20	4	589	4	POTEH	22	16277842	Missense_Mutation	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09		16277842	35026724	104	32673										
TXN2	0	genome.wustl.edu	37	chr22	36872855	36872855	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	accttcccgtgctgcttggcCaccatcttctctaacctcgg	7	17	2	0			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	22	36872855	36872855	C	G	SNP	TXN2	ENST00000216185	human	ensembl	69_37n	-1	known	silent	c.312	p.V104	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Thioredoxin	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Thioredoxin	-	no_errors	TXN2	HGNC	ENSG00000100348	270	0	0	117	92	43.81	-	-	-	G	36872855	C	G	36872855	2	3	284	1	0	0	0	0	0	0	0	1	16888	581	21	4		4	TXN2	22	36872855	Silent	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	20595013	36872855	14431711	105	32674										
SSTR3	0	genome.wustl.edu	37	chr22	37603630	37603630	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	actgaagggctggccgtgtgCcgcaggaccacatagatgac	14	11	0	3			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	22	37603630	37603630	C	A	SNP	SSTR3	ENST00000328544	human	ensembl	69_37n	-1	known	silent	c.213	p.R71	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_3,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473	31	0	0	7	6	46.15	-	-	-	A	37603630	C	A	37603630	2	1	284	1	0	0	0	0	0	0	0	1	15290	726	26	4		4	SSTR3	22	37603630	Silent	SNP	C	TCGA-AN-A0AR-01A-11W-A019-09	730775	37603630	13700936	106	32675										
SOX10	0	genome.wustl.edu	37	chr22	38369664	38369664	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccagaggcctggcccgagtgGccataatagggtcctgaggg	16	11	0	2			TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	22	38369664	38369664	G	A	SNP	SOX10	ENST00000360880	human	ensembl	69_37n	-1	known	silent	c.1239	p.G413	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX10	HGNC	ENSG00000100146	29	0	0	12	7	33.33	-	-	-	A	38369664	G	A	38369664	2	1	284	1	0	0	0	0	0	0	0	1	15030	1190	42	4		4	SOX10	22	38369664	Silent	SNP	G	TCGA-AN-A0AR-01A-11W-A019-09	766034	38369664	12934902	107	32676										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.111111111111111	12	0.224197913689944	1.58786111847336	2.4013949013949	0.589433293978749	0.0116425658138673	0.155978484465236	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2d77acd-89db-4d2d-89d7-d1cc58cf576b	75042bcc-6363-44b2-97bd-c51d3789ce67	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	115	0	0	52	7	11.86	-	-	-	AA	135960147	-	AA	135960146	7	5	284	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-AN-A0AR-01A-11W-A019-09		135960146	19310414	108	32677										
LHX9	0	genome.wustl.edu	37	chr1	197890729	197890729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	gtacgggcaccgtgcagaaaGggcggccccggaagcggaag	18	11	0	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	1	197890729	197890729	G	A	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	missense	c.673	p.G225R	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	22	0	0	26	8	23.53	-	-	-	A	197890729	G	A	197890729	3	1	285	1	0	0	0	0	1	0	0	0	8832	1000	35	4	715	4	LHX9	1	197890729	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		197890729	51359892	1	32678										
OR14C36	0	genome.wustl.edu	37	chr1	248512969	248512969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	aaataagcaaataaaggtggCcatcaagaaaatcatgaaga	8	5	2	3			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	1	248512969	248512969	C	T	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	missense	c.893	p.A298V	0.089	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	238	1	0.42	90	77	46.11	-	-	-	T	248512969	C	T	248512969	3	4	285	1	0	0	0	0	1	0	0	0	11019	739	26	4	895	4	OR14C36	1	248512969	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	50622240	248512969	737652	2	32679										
EPAS1	0	genome.wustl.edu	37	chr2	46588075	46588075	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	acaacaactgccctcctcacAatagtctgtgtggctacaag	7	13	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	46588075	46588075	A	G	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	missense	c.625	p.N209D	0.678	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	92	0	0	53	22	29.33	-	-	-	G	46588075	A	G	46588075	3	3	285	1	0	0	0	0	1	0	0	0	5187	130	5	5	647	5	EPAS1	2	46588075	Missense_Mutation	SNP	A	TCGA-AN-A0AS-01A-11W-A019-09		46588075	196611298	3	32680										
TGFA	0	genome.wustl.edu	37	chr2	70742012	70742012	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	actcagcggggacgtgctgtTctccaaggcctggcacgcag	14	13	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	70742012	70742012	T	C	SNP	TGFA	ENST00000295400	human	ensembl	69_37n	-1	known	missense	c.73	p.N25D	1.000	NULL	pfscan_EG-like_dom	-	no_errors	TGFA	HGNC	ENSG00000163235	26	0	0	14	5	26.32	-	-	-	C	70742012	T	C	70742012	3	2	285	1	0	0	0	0	1	0	0	0	15910	1783	62	5	429	5	TGFA	2	70742012	Missense_Mutation	SNP	T	TCGA-AN-A0AS-01A-11W-A019-09	24153937	70742012	172457361	4	32681										
TTN	0	genome.wustl.edu	37	chr2	179455719	179455719	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cttattctctgctctaactcGgaaaacatattcacagccct	4	13	3	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	179455719	179455719	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.53029	p.R17677*	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	233	0	0	192	40	17.24	-	-	-	A	179455719	G	A	179455719	4	1	285	1	0	0	0	0	0	1	0	0	16832	1124	39	1	47482	1	TTN	2	179455719	Nonsense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09	108713707	179455719	63743654	5	32682										
AOX1	0	genome.wustl.edu	37	chr2	201478612	201478612	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	gctcggcgccaggtgggaaaGtggagttcaagaggactctc	16	9	2	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	201478612	201478612	G	C	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	missense	c.1534	p.V512L	0.999	pfam_CO_DH_flav_C,superfamily_CO_DH_flav_C,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	147	0	0	115	27	19.01	-	-	-	C	201478612	G	C	201478612	3	2	285	1	0	0	0	0	1	0	0	0	730	1029	36	4	1592	4	AOX1	2	201478612	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09	22022893	201478612	41720761	6	32683										
BRPF1	0	genome.wustl.edu	37	chr3	9786077	9786078	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	acggaggcagtcctgtggggINScccccccagctccccatcat							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	9786077	9786078	-	C	INS	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	frame_shift_ins	c.2805_2806	p.Q937fs	1.000:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	34	0	0	30	4	11.76	-	-	-	C	9786078	-	C	9786077	7	5	285	1	0	1	1	0	0	0	0	0	1528	1190	42	0	2835	0	BRPF1	3	9786077	Frame_Shift_Ins	INS	-	TCGA-AN-A0AS-01A-11W-A019-09		9786077	188236353	7	32684										
PODXL2	0	genome.wustl.edu	37	chr3	127358204	127358205	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ggagccactggactcagaggINSagcctagtgagaccatgggc							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	127358204	127358205	-	C	INS	PODXL2	ENST00000342480	human	ensembl	69_37n	1	known	frame_shift_ins	c.187_188	p.E63fs	1.000:1.000	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631	80	0	0	111	50	31.06	-	-	-	C	127358205	-	C	127358204	7	5	285	1	0	1	1	0	0	0	0	0	12255	1175	41	0	193	0	PODXL2	3	127358204	Frame_Shift_Ins	INS	-	TCGA-AN-A0AS-01A-11W-A019-09	117572127	127358204	70664226	8	32685										
AMOTL2	0	genome.wustl.edu	37	chr3	134089691	134089692	+	Frame_Shift_Ins	INS	-	-	G													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cagcaggggggcccctcagtINSggggggccctgctggttgcg							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	134089691	134089692	-	G	INS	AMOTL2	ENST00000249883	human	ensembl	69_37n	-1	known	frame_shift_ins	c.585_584	p.L196fs	0.000:0.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019	22	0	0	16	2	11.11	-	-	-	G	134089692	-	G	134089691	7	5	285	1	0	1	1	0	0	0	0	0	584	1683	59	0	1793	0	AMOTL2	3	134089691	Frame_Shift_Ins	INS	-	TCGA-AN-A0AS-01A-11W-A019-09	6731487	134089691	63932739	9	32686										
TMEM44	0	genome.wustl.edu	37	chr3	194331653	194331653	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	atggccactcacctgctgcaCaggctcgatggtcagctcca	10	15	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	194331653	194331653	C	G	SNP	TMEM44	ENST00000392432	human	ensembl	69_37n	-1	known	missense	c.1150	p.V384L	0.721	NULL	NULL	-	no_errors	TMEM44	HGNC	ENSG00000145014	53	0	0	56	13	18.84	-	-	-	G	194331653	C	G	194331653	3	3	285	1	0	0	0	0	1	0	0	0	16263	478	17	4	323	4	TMEM44	3	194331653	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	60241962	194331653	3690777	10	32687										
MAP3K1	0	genome.wustl.edu	37	chr5	56170931	56170932	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	agagatggccctcaggcgtcINStttcccatgatgtcagtggg							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	56170931	56170932	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1759_1760	p.S588fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	271	0	0	95	82	46.33	-	-	-	T	56170932	-	T	56170931	7	5	285	1	0	1	1	0	0	0	0	0	9314	913	32	0	1797	0	MAP3K1	5	56170931	Frame_Shift_Ins	INS	-	TCGA-AN-A0AS-01A-11W-A019-09		56170931	124744329	11	32688										
RAD17	0	genome.wustl.edu	37	chr5	68692264	68692264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	atatagcacatctatagctaCgagaggtgtgatgcattcca	9	8	1	2			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	68692264	68692264	C	T	SNP	RAD17	ENST00000380774	human	ensembl	69_37n	1	known	missense	c.1496	p.T499M	0.996	tigrfam_Checkpoint_prot_Rad24_fun/met	tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942	86	0	0	51	16	23.88	-	-	-	T	68692264	C	T	68692264	3	4	285	1	0	0	0	0	1	0	0	0	13062	536	19	1	1559	1	RAD17	5	68692264	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	12521333	68692264	112222996	12	32689										
SLC6A7	0	genome.wustl.edu	37	chr5	149574323	149574323	+	Frame_Shift_Del	DEL	T	T	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	gacctgctgatgacccccagTgaccagggcgatgtcgacct							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	149574323	149574323	T	-	DEL	SLC6A7	ENST00000230671	human	ensembl	69_37n	1	known	frame_shift_del	c.66	p.S22fs	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	26	0	0	10	5	33.33	-	-	-	-	149574323	T	-	149574323	7	5	285	1	0	1	0	1	0	0	0	0	14778	1693	59	0	72	0	SLC6A7	5	149574323	Frame_Shift_Del	DEL	T	TCGA-AN-A0AS-01A-11W-A019-09	80882059	149574323	31340937	13	32690	260	2								
SLC6A7	0	genome.wustl.edu	37	chr5	149574326	149574327	+	Frame_Shift_Del	DEL	CC	CC	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ctgctgatgacccccagtgaCcagggcgatgtcgacctgga							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	149574326	149574327	CC	-	DEL	SLC6A7	ENST00000230671	human	ensembl	69_37n	1	known	frame_shift_del	c.69_70	p.D23fs	1.000:1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	25	0	0	10	5	33.33	-	-	-	-	149574327	CC	-	149574326	7	5	285	1	0	1	0	1	0	0	0	0	14778	506	18	0	75	0	SLC6A7	5	149574326	Frame_Shift_Del	DEL	CC	TCGA-AN-A0AS-01A-11W-A019-09	3	149574326	31340934	14	32691	260	2								
WRNIP1	0	genome.wustl.edu	37	chr6	2785330	2785330	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	aacaacgtcaaagcctgcctGaggaaccaccaggggccact	10	14	1	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	6	2785330	2785330	G	A	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	1	known	silent	c.1812	p.L604	1.000	pfam_MgsA_C	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	86	0	0	66	35	34.65	-	-	-	A	2785330	G	A	2785330	2	1	285	1	0	0	0	0	0	0	0	1	17500	1277	45	2		2	WRNIP1	6	2785330	Silent	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		2785330	168329737	15	32692										
BAZ1B	0	genome.wustl.edu	37	chr7	72892315	72892315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ataacacaggacagggcgctCctcttgtcctccctgtcttt	8	14	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	7	72892315	72892315	C	A	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.1476	p.R492S	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	204	0	0	156	61	27.98	-	-	-	A	72892315	C	A	72892315	3	1	285	1	0	0	0	0	1	0	0	0	1334	854	30	2	3027	2	BAZ1B	7	72892315	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09		72892315	86246348	16	32693										
SMARCD3	0	genome.wustl.edu	37	chr7	150936239	150936239	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cagctcctgcctgcgctgctGgatctttagaggaagtgaga							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	7	150936239	150936239	G	-	DEL	SMARCD3	ENST00000262188	human	ensembl	69_37n	-1	known	frame_shift_del	c.1402	p.Q468fs	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014	61	0	0	15	2	11.76	-	-	-	-	150936239	G	-	150936239	7	5	285	1	0	1	0	1	0	0	0	0	14868	1357	47	0	53	0	SMARCD3	7	150936239	Frame_Shift_Del	DEL	G	TCGA-AN-A0AS-01A-11W-A019-09	78043924	150936239	8202424	17	32694										
COL22A1	0	genome.wustl.edu	37	chr8	139675984	139675984	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cctggtggtccggaagggccCtagaaacaaacaaacaagta	11	10	0	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	8	139675984	139675984	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	splice_site	c.3151-1	e41-1	0.973	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436	85	0	0	138	46	25	-	-	-	A	139675984	C	A	139675984	5	1	285	1	0	0	0	0	0	0	1	0	3711	695	24	4	1826	4	COL22A1	8	139675984	Splice_Site	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09		139675984	6688038	18	32695										
ADD3	0	genome.wustl.edu	37	chr10	111860581	111860581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	catgatggagcagaggaaacGagttactcagatcctgcaaa	11	8	1	3			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	10	111860581	111860581	G	A	SNP	ADD3	ENST00000356080	human	ensembl	69_37n	1	known	missense	c.170	p.R57Q	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700	102	0	0	48	17	26.15	-	-	-	A	111860581	G	A	111860581	3	1	285	1	0	0	0	0	1	0	0	0	306	1058	37	1	172	1	ADD3	10	111860581	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		111860581	23674166	19	32696										
MADD	0	genome.wustl.edu	37	chr11	47304168	47304168	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ctttcagcgaattcacaacaGtgagtctacctgccctctgc	7	14	4	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	11	47304168	47304168	G	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	splice_site	c.1705+1	e8+1	1.000	-	-	-	no_errors	MADD	HGNC	ENSG00000110514	99	0	0	74	31	29.52	-	-	-	T	47304168	G	T	47304168	5	4	285	1	0	0	0	0	0	0	1	0	9219	1043	36	4	1736	4	MADD	11	47304168	Splice_Site	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		47304168	87702348	20	32697										
TIMELESS	0	genome.wustl.edu	37	chr12	56815795	56815795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	caagatggcttccaccacatCctgccctggcgtggggaagg	13	13	0	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	12	56815795	56815795	C	A	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	missense	c.2530	p.D844Y	1.000	pfam_TIMELESS_C	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	248	0	0	299	45	13.08	-	-	-	A	56815795	C	A	56815795	3	1	285	1	0	0	0	0	1	0	0	0	15999	855	30	2	1132	2	TIMELESS	12	56815795	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09		56815795	77036100	21	32698										
CEP290	0	genome.wustl.edu	37	chr12	88514773	88514773	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	tgacaagataaaaatacataCcgattcataatcttttaacc	3	8	2	2			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	12	88514773	88514773	C	A	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	splice_site	c.1359+1	e13+1	1.000	-	-	-	no_errors	CEP290	HGNC	ENSG00000198707	120	0	0	59	12	16.9	-	-	-	A	88514773	C	A	88514773	5	1	285	1	0	0	0	0	0	0	1	0	3282	521	18	4	6243	4	CEP290	12	88514773	Splice_Site	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	31698978	88514773	45337122	22	32699										
FREM2	0	genome.wustl.edu	37	chr13	39450219	39450219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	aggcctgacattttccctccGcctcataaggagtgaaccaa	8	13	1	2			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	13	39450219	39450219	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.8342	p.R2781H	0.995	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	280	0	0	459	97	17.41	-	-	-	A	39450219	G	A	39450219	3	1	285	1	0	0	0	0	1	0	0	0	6094	1087	38	1	8416	1	FREM2	13	39450219	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		39450219	75719659	23	32700										
RYR3	0	genome.wustl.edu	37	chr15	33927942	33927942	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	actggaggagacatgcgagtCggctgggcgaggccaggctg	19	9	0	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	15	33927942	33927942	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.3303	p.V1101	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	44	0	0	36	7	16.28	-	-	-	T	33927942	C	T	33927942	2	4	285	1	0	0	0	0	0	0	0	1	13856	871	31	1		1	RYR3	15	33927942	Silent	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09		33927942	68603450	24	32701										
SCAPER	0	genome.wustl.edu	37	chr15	77025641	77025641	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ttcctgtagctcattaagccTctgttcatattccttcaatt	4	11	4	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	15	77025641	77025641	T	C	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.1951	p.R651G	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	40	0	0	32	6	15.79	-	-	-	C	77025641	T	C	77025641	3	2	285	1	0	0	0	0	1	0	0	0	13965	1550	54	5	2319	5	SCAPER	15	77025641	Missense_Mutation	SNP	T	TCGA-AN-A0AS-01A-11W-A019-09	43097699	77025641	25505751	25	32702										
TP53	0	genome.wustl.edu	37	chr17	7579356	7579358	+	In_Frame_Del	DEL	GAC	GAC	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cccagaatgcaagaagcccaGacggaaaccgtagctgccct							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	17	7579356	7579358	GAC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.331_329	p.R110in_frame_del	0.011:0.000:0.004	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	236	0	0	126	107	45.53	-	-	-	-	7579358	GAC	-	7579356	7	5	285	1	0	1	0	1	0	0	0	0	16477	933	33	0	971	0	TP53	17	7579356	In_Frame_Del	DEL	GAC	TCGA-AN-A0AS-01A-11W-A019-09		7579356	73615854	26	32703										
XYLT2	0	genome.wustl.edu	37	chr17	48431826	48431827	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	gcccagcagcccatggatggINSccccccggtgcgaatcgcct							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	17	48431826	48431827	-	C	INS	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	frame_shift_ins	c.686_687	p.V232fs	0.998:0.995	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	39	0	0	8	2	20	-	-	-	C	48431827	-	C	48431826	7	5	285	1	0	1	1	0	0	0	0	0	17561	1203	42	0	696	0	XYLT2	17	48431826	Frame_Shift_Ins	INS	-	TCGA-AN-A0AS-01A-11W-A019-09	40852470	48431826	32763384	27	32704										
MADCAM1	0	genome.wustl.edu	37	chr19	501725	501725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ccacctccccggagtctcccGacaccacctccccggagtct	7	22	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	19	501725	501725	G	A	SNP	MADCAM1	ENST00000215637	human	ensembl	69_37n	1	known	missense	c.724	p.D242N	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like	-	no_errors	MADCAM1	HGNC	ENSG00000099866	10	0	0	1	4	80	-	-	-	A	501725	G	A	501725	3	1	285	1	0	0	0	0	1	0	0	0	9218	1058	37	1	738	1	MADCAM1	19	501725	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09		501725	58627258	28	32705										
TEAD2	0	genome.wustl.edu	37	chr19	49850509	49850509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	atatagctctcggaggccacCctttttctcagggaatttgt	9	10	2	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	19	49850509	49850509	C	T	SNP	TEAD2	ENST00000377214	human	ensembl	69_37n	-1	known	missense	c.856	p.G286S	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219	128	0	0	58	21	26.58	-	-	-	T	49850509	C	T	49850509	3	4	285	1	0	0	0	0	1	0	0	0	15834	623	22	4	512	4	TEAD2	19	49850509	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	49348784	49850509	9278474	29	32706										
NEFH	0	genome.wustl.edu	37	chr22	29879515	29879515	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	aaggactcactggagaggcaGcgctctgagctggaggaccg							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	29879515	29879515	G	-	DEL	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	frame_shift_del	c.1035	p.Q345fs	1.000	pfam_F	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	66	0	0	26	12	31.58	-	-	-	-	29879515	G	-	29879515	7	5	285	1	0	1	0	1	0	0	0	0	10386	962	34	0	1041	0	NEFH	22	29879515	Frame_Shift_Del	DEL	G	TCGA-AN-A0AS-01A-11W-A019-09		29879515	21425051	30	32707	261	2								
NEFH	0	genome.wustl.edu	37	chr22	29879522	29879522	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	cactggagaggcagcgctctGagctggaggaccgtcatcag							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	29879522	29879522	G	-	DEL	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	frame_shift_del	c.1042	p.E348fs	1.000	pfam_F	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	65	0	0	26	12	31.58	-	-	-	-	29879522	G	-	29879522	7	5	285	1	0	1	0	1	0	0	0	0	10386	1291	45	0	1048	0	NEFH	22	29879522	Frame_Shift_Del	DEL	G	TCGA-AN-A0AS-01A-11W-A019-09	7	29879522	21425044	31	32708	261	2								
FAM47B	0	genome.wustl.edu	37	chrX	34961802	34961802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	tggagcgtcccatctctgccCggagcctcccgagactcgcg	12	17	1	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	34961802	34961802	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.854	p.P285L	0.874	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	218	0	0	217	136	38.42	-	-	-	T	34961802	C	T	34961802	3	4	285	1	0	0	0	0	1	0	0	0	5616	652	23	1	856	1	FAM47B	23	34961802	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09		34961802	120308758	32	32709										
AKAP4	0	genome.wustl.edu	37	chrX	49957446	49957446	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ctcacatttgaaggggttctCattaagcagtttctgaatca	8	8	4	2			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	49957446	49957446	C	G	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1918	p.E640Q	0.170	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	510	0	0	448	62	12.16	-	-	-	G	49957446	C	G	49957446	3	3	285	1	0	0	0	0	1	0	0	0	453	835	29	2	654	2	AKAP4	23	49957446	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	14995644	49957446	105313114	33	32710										
TAF1	0	genome.wustl.edu	37	chrX	70627430	70627430	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	acatttctccttagagacctCataagtccatccaccggcgc	6	15	2	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	70627430	70627430	C	T	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.4111	p.H1371Y	1.000	pirsf_TAF1_animal,superfamily_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	220	0	0	139	26	15.76	-	-	-	T	70627430	C	T	70627430	3	4	285	1	0	0	0	0	1	0	0	0	15605	826	29	2	4280	2	TAF1	23	70627430	Missense_Mutation	SNP	C	TCGA-AN-A0AS-01A-11W-A019-09	20669984	70627430	84643130	34	32711										
CITED1	0	genome.wustl.edu	37	chrX	71521748	71521748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	gggcaccagcagaaggagagAgtgattctgcccctcccgcc	13	14	1	3			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	71521748	71521748	A	G	SNP	CITED1	ENST00000431381	human	ensembl	69_37n	-1	known	missense	c.485	p.L162P	0.000	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931	50	0	0	18	10	35.71	-	-	-	G	71521748	A	G	71521748	3	3	285	1	0	0	0	0	1	0	0	0	3469	304	11	5	178	5	CITED1	23	71521748	Missense_Mutation	SNP	A	TCGA-AN-A0AS-01A-11W-A019-09	894318	71521748	83748812	35	32712										
ZNF711	0	genome.wustl.edu	37	chrX	84525072	84525072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	agcacagtaccttcaaatttGtgacggcattaatacaaata	6	8	1	1			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	84525072	84525072	G	A	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.1052	p.C351Y	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	179	0	0	155	28	15.3	-	-	-	A	84525072	G	A	84525072	3	1	285	1	0	0	0	0	1	0	0	0	18212	1377	48	4	1050	4	ZNF711	23	84525072	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09	13003324	84525072	70745488	36	32713										
COL4A5	0	genome.wustl.edu	37	chrX	107829952	107829952	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ggatttcctggaatacagggTccacctggccttcctggacc	11	13	0	0			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	107829952	107829952	T	C	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	silent	c.1140	p.G380	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	506	0	0	466	97	17.2	-	-	-	C	107829952	T	C	107829952	2	2	285	1	0	0	0	0	0	0	0	1	3724	1654	58	5		5	COL4A5	23	107829952	Silent	SNP	T	TCGA-AN-A0AS-01A-11W-A019-09	23304880	107829952	47440608	37	32714										
SRPK3	0	genome.wustl.edu	37	chrX	153050911	153050911	+	Missense_Mutation	SNP	A	A	G													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	ctttctgctgcccatgatggAgtacatccccgaaaagcggg							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	153050911	153050911	A	G	SNP	SRPK3	ENST00000370101	human	ensembl	69_37n	1	known	missense	c.1640	p.E547G	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343	13	0	0	5	17	77.27	-	-	-	G	153050911	A	G	153050911	3	3	285	1	0	0	0	0	1	0	0	0	15252	304	11	5	1698	5	SRPK3	23	153050911	Missense_Mutation	SNP	A	TCGA-AN-A0AS-01A-11W-A019-09	45220959	153050911	2219649	38	32715	262	2								
SRPK3	0	genome.wustl.edu	37	chrX	153050912	153050912	+	Missense_Mutation	SNP	G	G	C													0.0833333333333333	3	0.640857762684373	1.52173913043478	2.70531400966184	1.24860646599777	1	1	0	tttctgctgcccatgatggaGtacatccccgaaaagcgggc							TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	153050912	153050912	G	C	SNP	SRPK3	ENST00000370101	human	ensembl	69_37n	1	known	missense	c.1641	p.E547D	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343	14	0	0	4	13	68.42	-	-	-	C	153050912	G	C	153050912	3	2	285	1	0	0	0	0	1	0	0	0	15252	1020	36	4	1699	4	SRPK3	23	153050912	Missense_Mutation	SNP	G	TCGA-AN-A0AS-01A-11W-A019-09	1	153050912	2219648	39	32716	262	2								
TMEM57	0	genome.wustl.edu	37	chr1	25810708	25810708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ctccctttcgagcaccgagcGagggatccgctcagaaatgg	12	13	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	25810708	25810708	G	T	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.1256	p.R419L	1.000	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	46	0	0	39	12	23.53	-	-	-	T	25810708	G	T	25810708	3	4	286	1	0	0	0	0	1	0	0	0	16279	1058	37	3	1282	3	TMEM57	1	25810708	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		25810708	223439913	1	32717										
PUM1	0	genome.wustl.edu	37	chr1	31439034	31439034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgctggggctggggctgaggCtgctgtgttcctaaagggcg	19	8	0	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	31439034	31439034	C	T	SNP	PUM1	ENST00000525843	human	ensembl	69_37n	-1	putative	missense	c.1933	p.A645T	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PUM1	HGNC	ENSG00000134644	243	0	0	313	121	27.5	-	-	-	T	31439034	C	T	31439034	3	4	286	1	0	0	0	0	1	0	0	0	12908	796	28	4	1725	4	PUM1	1	31439034	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	5628326	31439034	217811587	2	32718										
RLF	0	genome.wustl.edu	37	chr1	40654877	40654877	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcttagtgcttggcagattaGtactgtaagtttgagaactt	10	5	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	40654877	40654877	G	C	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.388	p.V130L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	241	0	0	188	78	29.32	-	-	-	C	40654877	G	C	40654877	3	2	286	1	0	0	0	0	1	0	0	0	13475	1029	36	4	394	4	RLF	1	40654877	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	9215843	40654877	208595744	3	32719										
LRP8	0	genome.wustl.edu	37	chr1	53727829	53727829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tccactgaagtcaatgctggAcagttggtgtagcttggagt	13	7	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	53727829	53727829	A	G	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.1825	p.S609P	0.995	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	119	0	0	116	17	12.78	-	-	-	G	53727829	A	G	53727829	3	3	286	1	0	0	0	0	1	0	0	0	9029	275	10	5	1098	5	LRP8	1	53727829	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	13072952	53727829	195522792	4	32720										
NFIA	0	genome.wustl.edu	37	chr1	61869882	61869882	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atccgctatcaccctcaggaGacgctgaaagaatttgtcca	8	12	2	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	61869882	61869882	G	A	SNP	NFIA	ENST00000371189	human	ensembl	69_37n	1	known	silent	c.1317	p.E439	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599	131	0	0	193	147	43.24	-	-	-	A	61869882	G	A	61869882	2	1	286	1	0	0	0	0	0	0	0	1	10442	933	33	2		2	NFIA	1	61869882	Silent	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	8142053	61869882	187380739	5	32721										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112999478	112999478	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtcatcgtaccaagtagggaTcaaccaacggttccatgcag	10	11	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	112999478	112999478	T	A	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	missense	c.1364	p.I455N	1.000	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	135	0	0	128	31	19.38	-	-	-	A	112999478	T	A	112999478	3	1	286	1	0	0	0	0	1	0	0	0	4078	1435	50	5	1378	5	CTTNBP2NL	1	112999478	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	51129596	112999478	136251143	6	32722										
HAO2	0	genome.wustl.edu	37	chr1	119927617	119927617	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tatgtggcaacaggcgacatGacattcgaaaccagttgagg	12	8	0	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	119927617	119927617	G	A	SNP	HAO2	ENST00000361035	human	ensembl	69_37n	1	known	missense	c.541	p.D181N	0.159	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882	187	0	0	117	47	28.66	-	-	-	A	119927617	G	A	119927617	3	1	286	1	0	0	0	0	1	0	0	0	7003	1290	45	2	512	2	HAO2	1	119927617	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	6928139	119927617	129323004	7	32723										
PDE4DIP	0	genome.wustl.edu	37	chr1	144921921	144921921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cacacattgtttggcatcagCcagttggcgctctttctgtc	9	12	3	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	144921921	144921921	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.1108	p.A370T	0.977	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	206	0	0	398	94	19.11	-	-	-	T	144921921	C	T	144921921	3	4	286	1	0	0	0	0	1	0	0	0	11716	739	26	4	6086	4	PDE4DIP	1	144921921	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	24994304	144921921	104328700	8	32724										
FLG	0	genome.wustl.edu	37	chr1	152280687	152280687	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cctgatgattgtccctggccCaccagtgagtgtctagagct	11	12	1	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	152280687	152280687	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.6675	p.V2225	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	161	0	0	490	257	30.93	-	-	-	A	152280687	C	A	152280687	2	1	286	1	0	0	0	0	0	0	0	1	5968	581	21	4		4	FLG	1	152280687	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	7358766	152280687	96969934	9	32725										
IL6R	0	genome.wustl.edu	37	chr1	154437823	154437823	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gacccacggagcccttatgaCatcagcaatacagactactt	7	13	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	154437823	154437823	C	G	SNP	IL6R	ENST00000368485	human	ensembl	69_37n	1	known	missense	c.1374	p.D458E	0.245	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL6R	HGNC	ENSG00000160712	92	0	0	81	28	25.69	-	-	-	G	154437823	C	G	154437823	3	3	286	1	0	0	0	0	1	0	0	0	7756	477	17	4	1412	4	IL6R	1	154437823	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	2157136	154437823	94812798	10	32726										
GON4L	0	genome.wustl.edu	37	chr1	155753882	155753882	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atcccatctcatcttggaacTgtgggcaaaggaaagggagg	13	8	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	155753882	155753882	T	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	splice_site	c.1789-2	e13-2	0.986	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	123	0	0	325	136	29.5	-	-	-	G	155753882	T	G	155753882	5	3	286	1	0	0	0	0	0	0	1	0	6621	1594	55	5	5128	5	GON4L	1	155753882	Splice_Site	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	1316059	155753882	93496739	11	32727										
SEMA4A	0	genome.wustl.edu	37	chr1	156124481	156124481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cggggggaggcgggcaggggCccatgcccagggtcagatac	20	11	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	156124481	156124481	C	T	SNP	SEMA4A	ENST00000355014	human	ensembl	69_37n	1	known	missense	c.112	p.P38S	0.586	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4A	HGNC	ENSG00000196189	38	0	0	28	14	29.79	-	-	-	T	156124481	C	T	156124481	3	4	286	1	0	0	0	0	1	0	0	0	14119	739	26	4	114	4	SEMA4A	1	156124481	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	370599	156124481	93126140	12	32728										
INSRR	0	genome.wustl.edu	37	chr1	156814280	156814283	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	caaggatgtagaaggcaacaCtgtctgtccaagagccattg							TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	156814280	156814283	CTGT	-	DEL	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	frame_shift_del	c.2711_2708	p.D903fs	0.005:0.003:0.002:0.830	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	59	0	0	56	23	29.11	-	-	-	-	156814283	CTGT	-	156814280	7	5	286	1	0	1	0	1	0	0	0	0	7828	565	20	0	1217	0	INSRR	1	156814280	Frame_Shift_Del	DEL	CTGT	TCGA-AN-A0AT-01A-11D-A045-09	689799	156814280	92436341	13	32729										
KIAA1804	0	genome.wustl.edu	37	chr1	233515008	233515008	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	caggctgctgaagaaccgttGcccaaggaagagaagaagaa	13	8	0	5			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	233515008	233515008	G	A	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	silent	c.2256	p.L752	0.632	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	132	0	0	92	76	44.97	-	-	-	A	233515008	G	A	233515008	2	1	286	1	0	0	0	0	0	0	0	1	8311	1310	46	4		4	KIAA1804	1	233515008	Silent	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	76700728	233515008	15735613	14	32730										
FMN2	0	genome.wustl.edu	37	chr1	240497202	240497202	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cctaggacaatagcagaagcCttttgtcatatattgtttcg	8	8	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	1	240497202	240497202	C	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4600	p.L1534I	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	144	0	0	185	65	25.9	-	-	-	A	240497202	C	A	240497202	3	1	286	1	0	0	0	0	1	0	0	0	5996	681	24	4	4646	4	FMN2	1	240497202	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	6982194	240497202	8753419	15	32731										
CAD	0	genome.wustl.edu	37	chr2	27448725	27448725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	accagccaagtgctagtagaCaagtctctgaagggatggaa	12	8	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	27448725	27448725	C	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.1773	p.D591E	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	162	0	0	275	124	31.08	-	-	-	A	27448725	C	A	27448725	3	1	286	1	0	0	0	0	1	0	0	0	2590	477	17	4	1819	4	CAD	2	27448725	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		27448725	215750648	16	32732										
ERLEC1	0	genome.wustl.edu	37	chr2	54035587	54035587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtttcttagtggttcttactGctttcgtggggtgagaagta	13	5	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	54035587	54035587	G	T	SNP	ERLEC1	ENST00000185150	human	ensembl	69_37n	1	known	missense	c.1031	p.C344F	1.000	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912	217	0	0	270	75	21.74	-	-	-	T	54035587	G	T	54035587	3	4	286	1	0	0	0	0	1	0	0	0	5268	1319	46	4	1065	4	ERLEC1	2	54035587	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	26586862	54035587	189163786	17	32733										
SFXN5	0	genome.wustl.edu	37	chr2	73268023	73268023	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ggcgcagggtcccatgcttaTagtcctccagcagctgcaca	11	14	0	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	73268023	73268023	T	G	SNP	SFXN5	ENST00000272433	human	ensembl	69_37n	-1	known	missense	c.209	p.Y70S	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040	66	0	0	89	47	34.56	-	-	-	G	73268023	T	G	73268023	3	3	286	1	0	0	0	0	1	0	0	0	14286	1406	49	5	861	5	SFXN5	2	73268023	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	19232436	73268023	169931350	18	32734										
ALMS1	0	genome.wustl.edu	37	chr2	73747041	73747041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttaatgctgaagatcgtggaCatgaaattatagagcctggt	11	5	0	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	73747041	73747041	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.9676	p.H3226Y	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	301	0	0	190	73	27.76	-	-	-	T	73747041	C	T	73747041	3	4	286	1	0	0	0	0	1	0	0	0	535	478	17	4	9718	4	ALMS1	2	73747041	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	479018	73747041	169452332	19	32735										
BCL2L11	0	genome.wustl.edu	37	chr2	111881572	111881572	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccccgcttttcatctttatgAgaagatcctccctgctgtct	6	14	3	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	111881572	111881572	A	G	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	missense	c.250	p.R84G	1.000	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	15	0	0	151	76	33.48	-	-	-	G	111881572	A	G	111881572	3	3	286	1	0	0	0	0	1	0	0	0	1373	296	11	5	252	5	BCL2L11	2	111881572	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	38134531	111881572	131317801	20	32736										
CNTNAP5	0	genome.wustl.edu	37	chr2	125262113	125262113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gattcagaaaatgacagaacGcgtagctgaaatcctcacag	9	9	2	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	125262113	125262113	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.1304	p.R435H	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	178	0	0	75	41	35.04	-	-	-	A	125262113	G	A	125262113	3	1	286	1	0	0	0	0	1	0	0	0	3680	1087	38	1	1334	1	CNTNAP5	2	125262113	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	13380541	125262113	117937260	21	32737										
PROC	0	genome.wustl.edu	37	chr2	128186352	128186352	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	agggcgacagtggggggcccAtggtcgcctccttccacggc	16	14	0	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	128186352	128186352	A	G	SNP	PROC	ENST00000453608	human	ensembl	69_37n	1	known	missense	c.1381	p.M461V	1.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROC	HGNC	ENSG00000115718	12	0	0	27	12	30	-	-	-	G	128186352	A	G	128186352	3	3	286	1	0	0	0	0	1	0	0	0	12626	217	8	5	1246	5	PROC	2	128186352	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	2924239	128186352	115013021	22	32738										
SCN7A	0	genome.wustl.edu	37	chr2	167262191	167262191	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	accatctatcatatgaatatCtgatgtatttttgtcatttc	4	7	4	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	167262191	167262191	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.4948	p.D1650Y	0.018	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	363	0	0	228	98	30.06	-	-	-	A	167262191	C	A	167262191	3	1	286	1	0	0	0	0	1	0	0	0	14011	913	32	2	104	2	SCN7A	2	167262191	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	39075839	167262191	75937182	23	32739										
B3GALT1	0	genome.wustl.edu	37	chr2	168725803	168725803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttttcttgttatcctcatcaGcaccactcacaaggaatttg	5	11	4	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	168725803	168725803	G	A	SNP	B3GALT1	ENST00000305861	human	ensembl	69_37n	1	known	missense	c.254	p.S85N	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT1	HGNC	ENSG00000172318	141	0	0	73	42	36.52	-	-	-	A	168725803	G	A	168725803	3	1	286	1	0	0	0	0	1	0	0	0	1251	971	34	4	256	4	B3GALT1	2	168725803	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	1463612	168725803	74473570	24	32740										
TTN	0	genome.wustl.edu	37	chr2	179606022	179606022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gatagtgtaataaacactggTgcaaagctgcttgttttctt	9	6	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	179606022	179606022	T	C	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11425	p.T3809A	0.915	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	71	0	0	38	22	36.67	-	-	-	C	179606022	T	C	179606022	3	2	286	1	0	0	0	0	1	0	0	0	16832	1696	59	5	92851	5	TTN	2	179606022	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	10880219	179606022	63593351	25	32741										
FZD7	0	genome.wustl.edu	37	chr2	202899638	202899638	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgcaccagttctacccgctgGtgaaggtgcagtgttctccc	11	13	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	202899638	202899638	G	C	SNP	FZD7	ENST00000286201	human	ensembl	69_37n	1	known	missense	c.268	p.V90L	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760	19	0	0	104	37	26.24	-	-	-	C	202899638	G	C	202899638	3	2	286	1	0	0	0	0	1	0	0	0	6184	1261	44	4	270	4	FZD7	2	202899638	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	23293616	202899638	40299735	26	32742										
ERBB4	0	genome.wustl.edu	37	chr2	212248654	212248654	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ggtgttgaggtacagtggctCattcacatactcatcctcgg	11	10	3	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	212248654	212248654	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.3613	p.E1205K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	261	0	0	190	107	36.03	-	-	-	T	212248654	C	T	212248654	3	4	286	1	0	0	0	0	1	0	0	0	5246	835	29	2	317	2	ERBB4	2	212248654	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	9349016	212248654	30950719	27	32743										
LRRFIP1	0	genome.wustl.edu	37	chr2	238671248	238671248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttctcaatggtcttttaggaAgagccagtgaagtggaggtg	14	5	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	2	238671248	238671248	A	G	SNP	LRRFIP1	ENST00000392000	human	ensembl	69_37n	1	known	missense	c.892	p.R298G	1.000	pfam_Leu-rich_rep_flightless-int_pr	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	65	0	0	83	33	28.45	-	-	-	G	238671248	A	G	238671248	3	3	286	1	0	0	0	0	1	0	0	0	9093	64	3	5	1610	5	LRRFIP1	2	238671248	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	26422594	238671248	4528125	28	32744										
PCCB	0	genome.wustl.edu	37	chr3	136045650	136045650	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tctctctctttctaggatgcTtggatattaattcatctgtg	7	8	5	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	3	136045650	136045650	T	G	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	1	known	missense	c.1096	p.L366V	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	329	0	0	194	189	49.35	-	-	-	G	136045650	T	G	136045650	3	3	286	1	0	0	0	0	1	0	0	0	11578	1606	56	5	1202	5	PCCB	3	136045650	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09		136045650	61976780	29	32745										
EXOC1	0	genome.wustl.edu	37	chr4	56744164	56744164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atccatttcatagagatttgCtccgatatgccaagctgatg	8	9	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	4	56744164	56744164	C	T	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.1156	p.L386F	1.000	pfam_Exocyst_Exoc1	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	135	0	0	248	128	34.04	-	-	-	T	56744164	C	T	56744164	3	4	286	1	0	0	0	0	1	0	0	0	5337	797	28	4	1186	4	EXOC1	4	56744164	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		56744164	134410112	30	32746										
PROL1	0	genome.wustl.edu	37	chr4	71275628	71275628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ctgccacctccatatcagcaGcaacccccgcagcatctact	5	19	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	4	71275628	71275628	G	A	SNP	PROL1	ENST00000399575	human	ensembl	69_37n	1	putative	missense	c.583	p.A195T	0.009	NULL	NULL	-	no_errors	PROL1	HGNC	ENSG00000171199	770	0	0	456	218	32.2	-	-	-	A	71275628	G	A	71275628	3	1	286	1	0	0	0	0	1	0	0	0	12635	971	34	4	589	4	PROL1	4	71275628	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	14531464	71275628	119878648	31	32747										
PRKG2	0	genome.wustl.edu	37	chr4	82125781	82125781	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgctttctcaaaggaaaattCagggggtttgttcaggtcat	11	6	4	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	4	82125781	82125781	C	G	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	missense	c.421	p.E141Q	0.952	pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	46	0	0	48	35	42.17	-	-	-	G	82125781	C	G	82125781	3	3	286	1	0	0	0	0	1	0	0	0	12604	835	29	2	1939	2	PRKG2	4	82125781	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	10850153	82125781	109028495	32	32748										
VCAN	0	genome.wustl.edu	37	chr5	82815833	82815833	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cagttggatctgatgagagcAccttgatctttgaccaaatt	9	8	2	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	5	82815833	82815833	A	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.1708	p.T570S	0.020	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	114	0	0	59	51	46.36	-	-	-	T	82815833	A	T	82815833	3	4	286	1	0	0	0	0	1	0	0	0	17235	159	6	5	1730	5	VCAN	5	82815833	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09		82815833	98099427	33	32749										
VPS52	0	genome.wustl.edu	37	chr6	33231848	33231848	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtctggttgatactgacaagAgcggaggagaactctgcata	13	7	2	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	33231848	33231848	A	G	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	silent	c.1557	p.A519	0.995	pfam_Vps52	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	98	0	0	102	100	49.5	-	-	-	G	33231848	A	G	33231848	2	3	286	1	0	0	0	0	0	0	0	1	17311	291	11	5		5	VPS52	6	33231848	Silent	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09		33231848	137883219	34	32750										
PKHD1	0	genome.wustl.edu	37	chr6	51890477	51890477	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgctggagcaccacagacatAttagcaaatcccatctgctt	7	12	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	51890477	51890477	A	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.4131	p.N1377	0.013	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	101	0	0	61	27	30.68	-	-	-	G	51890477	A	G	51890477	2	3	286	1	0	0	0	0	0	0	0	1	12045	446	16	5		5	PKHD1	6	51890477	Silent	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	18658629	51890477	119224590	35	32751										
DST	0	genome.wustl.edu	37	chr6	56357785	56357785	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	caagatgagacttggccgagAagctacatttagggtctgtt	12	7	1	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	56357785	56357785	A	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.20404	p.S6802T	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	276	0	0	194	92	32.17	-	-	-	T	56357785	A	T	56357785	3	4	286	1	0	0	0	0	1	0	0	0	4818	246	9	5	2967	5	DST	6	56357785	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	4467308	56357785	114757282	36	32752										
PRDM1	0	genome.wustl.edu	37	chr6	106553082	106553082	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cccgaccaaagcctcaagagCtccagccctcacagcagccc	7	20	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	106553082	106553082	C	G	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.1047	p.S349R	1.000	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	70	0	0	38	9	19.15	-	-	-	G	106553082	C	G	106553082	3	3	286	1	0	0	0	0	1	0	0	0	12531	796	28	4	1078	4	PRDM1	6	106553082	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	50195297	106553082	64561985	37	32753										
AIM1	0	genome.wustl.edu	37	chr6	106967226	106967226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtaaaacgtttgttgggaggGcaaagctgaatttagccaaa	12	5	0	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	106967226	106967226	G	C	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.919	p.A307P	1.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	60	0	0	91	50	35.46	-	-	-	C	106967226	G	C	106967226	3	2	286	1	0	0	0	0	1	0	0	0	430	1203	42	4	925	4	AIM1	6	106967226	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	414144	106967226	64147841	38	32754										
NR2E1	0	genome.wustl.edu	37	chr6	108502082	108502082	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aaatacaggctttacaagagGtggtggctcgatttagacaa	11	6	0	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	108502082	108502082	G	C	SNP	NR2E1	ENST00000368986	human	ensembl	69_37n	1	known	missense	c.811	p.V271L	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333	54	0	0	117	71	37.77	-	-	-	C	108502082	G	C	108502082	3	2	286	1	0	0	0	0	1	0	0	0	10698	1261	44	4	837	4	NR2E1	6	108502082	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	1534856	108502082	62612985	39	32755										
HIVEP2	0	genome.wustl.edu	37	chr6	143091275	143091275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgctgggcaggaatggctccCtggaagacgggctaacagaa	15	9	0	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	143091275	143091275	C	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.4601	p.R1534M	0.786	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	89	0	0	109	55	33.33	-	-	-	A	143091275	C	A	143091275	3	1	286	1	0	0	0	0	1	0	0	0	7238	681	24	4	2763	4	HIVEP2	6	143091275	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	34589193	143091275	28023792	40	32756										
SYNE1	0	genome.wustl.edu	37	chr6	152826437	152826437	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgcctttcactgtctccaagTccaccaattccggtcgaatg	7	14	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	152826437	152826437	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.677	p.D226A	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	172	0	0	293	87	22.77	-	-	-	G	152826437	T	G	152826437	3	3	286	1	0	0	0	0	1	0	0	0	15537	1667	58	5	26341	5	SYNE1	6	152826437	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	9735162	152826437	18288630	41	32757										
ACAT2	0	genome.wustl.edu	37	chr6	160189602	160189602	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ggtgagatgccactgactgaCagtatactctgtgatggtct	12	8	2	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	160189602	160189602	C	T	SNP	ACAT2	ENST00000541436	human	ensembl	69_37n	1	known	silent	c.519	p.D173	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT2	HGNC	ENSG00000120437	89	0	0	259	126	32.73	-	-	-	T	160189602	C	T	160189602	2	4	286	1	0	0	0	0	0	0	0	1	122	477	17	4		4	ACAT2	6	160189602	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	7363165	160189602	10925465	42	32758										
SMOC2	0	genome.wustl.edu	37	chr6	168910709	168910709	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcctttcccgttgtgaatttCaacgtgccaagtgcaaagat	8	10	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	6	168910709	168910709	C	A	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.199	p.Q67K	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	67	0	0	139	157	53.04	-	-	-	A	168910709	C	A	168910709	3	1	286	1	0	0	0	0	1	0	0	0	14891	827	29	2	205	2	SMOC2	6	168910709	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	8721107	168910709	2204358	43	32759										
CHRM2	0	genome.wustl.edu	37	chr7	136700174	136700174	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tttccaatgctgctgtcaccTttggtacggctattgcagcc	9	12	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	7	136700174	136700174	T	A	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	missense	c.562	p.F188I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	100	0	0	74	27	26.73	-	-	-	A	136700174	T	A	136700174	3	1	286	1	0	0	0	0	1	0	0	0	3406	1609	56	5	564	5	CHRM2	7	136700174	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09		136700174	22438489	44	32760										
DGKI	0	genome.wustl.edu	37	chr7	137266623	137266623	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttcatggaactccagtgtgaCatgggcatcaaatccaaggc	10	10	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	7	137266623	137266623	C	A	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.1615	p.V539F	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	130	0	0	91	147	61.76	-	-	-	A	137266623	C	A	137266623	3	1	286	1	0	0	0	0	1	0	0	0	4507	478	17	4	1662	4	DGKI	7	137266623	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	566449	137266623	21872040	45	32761										
TRMT12	0	genome.wustl.edu	37	chr8	125464331	125464331	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aaaaatgctgtcaccagccaCcaagccagagtggcaaaggt	10	11	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	8	125464331	125464331	C	G	SNP	TRMT12	ENST00000328599	human	ensembl	69_37n	1	known	missense	c.1163	p.T388S	0.009	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665	49	0	0	38	13	25.49	-	-	-	G	125464331	C	G	125464331	3	3	286	1	0	0	0	0	1	0	0	0	16660	507	18	4	1165	4	TRMT12	8	125464331	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		125464331	20899691	46	32762										
ARID3C	0	genome.wustl.edu	37	chr9	34623463	34623463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcagctgagcgcatgcatgcGctggcaggccggaggtggaa	17	10	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	9	34623463	34623463	G	A	SNP	ARID3C	ENST00000378909	human	ensembl	69_37n	-1	known	missense	c.824	p.A275V	0.002	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3C	HGNC	ENSG00000205143	8	0	0	14	13	48.15	-	-	-	A	34623463	G	A	34623463	3	1	286	1	0	0	0	0	1	0	0	0	920	1087	38	1	429	1	ARID3C	9	34623463	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		34623463	106589968	47	32763										
GNAQ	0	genome.wustl.edu	37	chr9	80412549	80412549	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gcagggtcagctacgcggtcCaagtcattaagatagctaga	12	9	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	9	80412549	80412549	C	A	SNP	GNAQ	ENST00000286548	human	ensembl	69_37n	-1	known	missense	c.492	p.L164F	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_GproteinA	-	no_errors	GNAQ	HGNC	ENSG00000156052	112	1	0.88	135	20	12.9	-	-	-	A	80412549	C	A	80412549	3	1	286	1	0	0	0	0	1	0	0	0	6561	593	21	4	603	4	GNAQ	9	80412549	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	45789086	80412549	60800882	48	32764										
TLE4	0	genome.wustl.edu	37	chr9	82323054	82323054	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atgaaaaatctactactcccGtctcaaagtccaatacccct	3	14	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	9	82323054	82323054	G	T	SNP	TLE4	ENST00000376520	human	ensembl	69_37n	1	known	missense	c.1054	p.V352F	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829	224	0	0	124	58	31.87	-	-	-	T	82323054	G	T	82323054	3	4	286	1	0	0	0	0	1	0	0	0	16036	1145	40	3	1004	3	TLE4	9	82323054	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	1910505	82323054	58890377	49	32765										
CACNA1B	0	genome.wustl.edu	37	chr9	140970316	140970316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atgacaccagcatcaaccgcCacaacaacttccggacgttt	6	15	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	9	140970316	140970316	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.4906	p.H1636Y	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	123	0	0	74	65	46.76	-	-	-	T	140970316	C	T	140970316	3	4	286	1	0	0	0	0	1	0	0	0	2564	594	21	4	5037	4	CACNA1B	9	140970316	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	58647262	140970316	243115	50	32766										
ANKRD30A	0	genome.wustl.edu	37	chr10	37490246	37490246	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atggataaaataagtggaaaAttagaaggtaagaaccatct	9	3	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	10	37490246	37490246	A	T	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	missense	c.2694	p.K898N	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	107	0	0	113	60	34.68	-	-	-	T	37490246	A	T	37490246	3	4	286	1	0	0	0	0	1	0	0	0	658	98	4	5	2816	5	ANKRD30A	10	37490246	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09		37490246	98044501	51	32767										
OGDHL	0	genome.wustl.edu	37	chr10	50946058	50946058	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtagttggccggtgtggagcAgttgaccacgatccagttgc	15	9	0	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	10	50946058	50946058	A	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.2452	p.C818S	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	175	0	0	152	54	26.09	-	-	-	T	50946058	A	T	50946058	3	4	286	1	0	0	0	0	1	0	0	0	10913	188	7	5	600	5	OGDHL	10	50946058	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	13455812	50946058	84588689	52	32768										
ADAMTS14	0	genome.wustl.edu	37	chr10	72498656	72498656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gcagacatatggccaggatgGaggctggagctcctggacca	15	10	0	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	10	72498656	72498656	G	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.1667	p.G556V	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	88	0	0	53	53	50	-	-	-	T	72498656	G	T	72498656	3	4	286	1	0	0	0	0	1	0	0	0	259	1174	41	2	1709	2	ADAMTS14	10	72498656	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	21552598	72498656	63036091	53	32769										
DNMBP	0	genome.wustl.edu	37	chr10	101648689	101648689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccacatgctcacagcagccaCcactttcacacatgcggact	6	17	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	10	101648689	101648689	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.3250	p.V1084M	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	100	0	0	135	59	30.41	-	-	-	T	101648689	C	T	101648689	3	4	286	1	0	0	0	0	1	0	0	0	4709	507	18	4	1579	4	DNMBP	10	101648689	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	29150033	101648689	33886058	54	32770										
CALCA	0	genome.wustl.edu	37	chr11	14989307	14989307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	acattggtgggcacaaagttGttcttcaccacaccccctga	8	13	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	14989307	14989307	G	C	SNP	CALCA	ENST00000361010	human	ensembl	69_37n	-1	known	missense	c.321	p.N107K	0.995	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Procalcitonin_gene-rel_peptide	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Procalcitonin_gene-rel_peptide,prints_Pro-islet_amyloid_polypep	-	no_errors	CALCA	HGNC	ENSG00000110680	133	0	0	91	30	24.59	-	-	-	C	14989307	G	C	14989307	3	2	286	1	0	0	0	0	1	0	0	0	2600	1368	48	4	69	4	CALCA	11	14989307	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		14989307	120017209	55	32771										
FADS2	0	genome.wustl.edu	37	chr11	61608167	61608167	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aaacccaagtggaaccacctTgtccacaaattcgtcattgg	7	12	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	61608167	61608167	T	A	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	silent	c.588	p.L196	0.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	134	0	0	289	140	32.63	-	-	-	A	61608167	T	A	61608167	2	1	286	1	0	0	0	0	0	0	0	1	5406	1799	63	5		5	FADS2	11	61608167	Silent	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	46618860	61608167	73398349	56	32772										
NAALADL1	0	genome.wustl.edu	37	chr11	64825817	64825817	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cccacttctcacctgaggttCtcccggatcctgtgggcatc	9	16	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	64825817	64825817	C	T	SNP	NAALADL1	ENST00000358658	human	ensembl	69_37n	-1	known	silent	c.177	p.E59	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060	37	0	0	39	23	35.94	-	-	-	T	64825817	C	T	64825817	2	4	286	1	0	0	0	0	0	0	0	1	10201	912	32	2		2	NAALADL1	11	64825817	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	3217650	64825817	70180699	57	32773										
NUMA1	0	genome.wustl.edu	37	chr11	71726884	71726884	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgcttcaggctactgcttagCtgctccacctggtggcggag	13	12	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	71726884	71726884	C	G	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.1665	p.Q555H	0.998	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	48	0	0	170	87	33.85	-	-	-	G	71726884	C	G	71726884	3	3	286	1	0	0	0	0	1	0	0	0	10823	796	28	4	4734	4	NUMA1	11	71726884	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	6901067	71726884	63279632	58	32774										
CUL5	0	genome.wustl.edu	37	chr11	107968417	107968417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttttgttgtatgaacctcaaGtcaactcacccaaagacttt	5	10	3	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	107968417	107968417	G	A	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	missense	c.1960	p.V654I	1.000	pfam_Cullin_N,superfamily_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	201	0	0	129	131	50.19	-	-	-	A	107968417	G	A	107968417	3	1	286	1	0	0	0	0	1	0	0	0	4090	1029	36	4	2026	4	CUL5	11	107968417	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	36241533	107968417	27038099	59	32775										
TBRG1	0	genome.wustl.edu	37	chr11	124494848	124494848	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aaaatgctgctatttgtgatGaaattgctcgtcttgaggaa	10	5	1	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	11	124494848	124494848	G	T	SNP	TBRG1	ENST00000441174	human	ensembl	69_37n	1	known	nonsense	c.172	p.E58*	1.000	NULL	pfam_FYrich_N,pfam_FYrich_C,smart_FYrich_N,smart_FYrich_C	-	no_errors	TBRG1	HGNC	ENSG00000154144	70	0	0	106	59	35.76	-	-	-	T	124494848	G	T	124494848	4	4	286	1	0	0	0	0	0	1	0	0	15743	1291	45	2	178	2	TBRG1	11	124494848	Nonsense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	16526431	124494848	10511668	60	32776										
SLC17A8	0	genome.wustl.edu	37	chr12	100795569	100795569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ttccaggttcctatgcagggGcagtggttgccatgcccctg	13	12	0	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	12	100795569	100795569	G	A	SNP	SLC17A8	ENST00000323346	human	ensembl	69_37n	1	known	missense	c.691	p.A231T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	229	0	0	671	259	27.82	-	-	-	A	100795569	G	A	100795569	3	1	286	1	0	0	0	0	1	0	0	0	14512	1203	42	4	713	4	SLC17A8	12	100795569	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		100795569	33056326	61	32777										
DRAM1	0	genome.wustl.edu	37	chr12	102295135	102295135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcaaacctgctatttcagcaCtcctgtttttaacttggtgt	6	10	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	12	102295135	102295135	C	T	SNP	DRAM1	ENST00000258534	human	ensembl	69_37n	1	known	missense	c.266	p.T89I	0.727	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048	348	1	0.29	561	289	34	-	-	-	T	102295135	C	T	102295135	3	4	286	1	0	0	0	0	1	0	0	0	4788	565	20	4	276	4	DRAM1	12	102295135	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	1499566	102295135	31556760	62	32778										
STAB2	0	genome.wustl.edu	37	chr12	104097010	104097010	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gcttgggaaaagttctggaaAttcagaagaacagatgtgat	12	4	2	4			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	12	104097010	104097010	A	T	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.3799	p.I1267F	1.000	superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	61	0	0	161	75	31.78	-	-	-	T	104097010	A	T	104097010	3	4	286	1	0	0	0	0	1	0	0	0	15329	101	4	5	3937	5	STAB2	12	104097010	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	1801875	104097010	29754885	63	32779										
BRCA2	0	genome.wustl.edu	37	chr13	32936802	32936802	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ctaatagatgcctaagcccaGaaagggtgcttcttcaacta	8	10	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	13	32936802	32936802	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.7948	p.E2650Q	1.000	pfam_DNA_recomb/repair_BRCA2_hlx,superfamily_DNA_recomb/repair_BRCA2_hlx,pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	313	0	0	120	61	33.7	-	-	-	C	32936802	G	C	32936802	3	2	286	1	0	0	0	0	1	0	0	0	1507	943	33	2	8010	2	BRCA2	13	32936802	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		32936802	82233076	64	32780										
OR4K2	0	genome.wustl.edu	37	chr14	20344945	20344945	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccattctgtggtccctatgaGgtagacagctttttctgtga	10	9	2	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	14	20344945	20344945	G	T	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.519	p.E173D	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	122	0	0	260	131	33.5	-	-	-	T	20344945	G	T	20344945	3	4	286	1	0	0	0	0	1	0	0	0	11145	991	35	4	521	4	OR4K2	14	20344945	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		20344945	87004595	65	32781										
CYFIP1	0	genome.wustl.edu	37	chr15	22960793	22960793	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	actgctgctgtcctctgcagGtacgtgctctactccctgga	10	14	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	15	22960793	22960793	G	C	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	missense	c.1986	p.E662D	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	23	0	0	33	6	15.38	-	-	-	C	22960793	G	C	22960793	3	2	286	1	0	0	0	0	1	0	0	0	4168	1275	44	4	2433	4	CYFIP1	15	22960793	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		22960793	79570599	66	32782										
HERC2	0	genome.wustl.edu	37	chr15	28501091	28501092	+	Frame_Shift_Del	DEL	AG	AG	-													0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccatcaagctgcccaccagaAgatcaatcatgaatcgacga							TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	15	28501091	28501092	AG	-	DEL	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	frame_shift_del	c.2798_2797	p.L933fs	0.992:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	211	0	0	233	46	16.49	-	-	-	-	28501092	AG	-	28501091	7	5	286	1	0	1	0	1	0	0	0	0	7109	72	3	0	12006	0	HERC2	15	28501091	Frame_Shift_Del	DEL	AG	TCGA-AN-A0AT-01A-11D-A045-09	5540298	28501091	74030301	67	32783										
GATM	0	genome.wustl.edu	37	chr15	45658366	45658366	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atgcactctgtagtctggagCaagatgcctacgcatccatt	9	11	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	15	45658366	45658366	C	A	SNP	GATM	ENST00000396659	human	ensembl	69_37n	-1	known	missense	c.856	p.A286S	0.999	NULL	NULL	-	no_errors	GATM	HGNC	ENSG00000171766	136	0	0	115	99	46.26	-	-	-	A	45658366	C	A	45658366	3	1	286	1	0	0	0	0	1	0	0	0	6313	710	25	4	431	4	GATM	15	45658366	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	17157275	45658366	56873026	68	32784										
IGDCC3	0	genome.wustl.edu	37	chr15	65667575	65667575	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcaaggacccattggccagcAaggtggagtgggtactctct	13	10	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	15	65667575	65667575	A	C	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.269	p.L90W	0.913	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	31	0	0	58	26	30.95	-	-	-	C	65667575	A	C	65667575	3	2	286	1	0	0	0	0	1	0	0	0	7622	131	5	5	2227	5	IGDCC3	15	65667575	Missense_Mutation	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	20009209	65667575	36863817	69	32785										
C15orf39	0	genome.wustl.edu	37	chr15	75500670	75500670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	catctacttcagccccagggGactccctggagcagcatttt	9	14	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	15	75500670	75500670	G	A	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	missense	c.2281	p.D761N	0.000	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	22	0	0	58	10	14.49	-	-	-	A	75500670	G	A	75500670	3	1	286	1	0	0	0	0	1	0	0	0	1805	1174	41	2	2283	2	C15orf39	15	75500670	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	9833095	75500670	27030722	70	32786										
ZNF597	0	genome.wustl.edu	37	chr16	3487525	3487525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aactgctgattaatctcaggCttgccttcctctcctgttga	7	12	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	3487525	3487525	C	T	SNP	ZNF597	ENST00000301744	human	ensembl	69_37n	-1	known	silent	c.174	p.K58	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981	60	0	0	71	41	36.61	-	-	-	T	3487525	C	T	3487525	2	4	286	1	0	0	0	0	0	0	0	1	18123	796	28	4		4	ZNF597	16	3487525	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		3487525	86867228	71	32787										
CREBBP	0	genome.wustl.edu	37	chr16	3823824	3823825	+	Frame_Shift_Ins	INS	-	-	T													0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cgctggatgacgggaactggINSttctgtggcagaaactggct							TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	3823824	3823825	-	T	INS	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2391_2390	p.N797fs	0.983:0.987	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	60	0	0	46	15	24.59	-	-	-	T	3823825	-	T	3823824	7	5	286	1	0	1	1	0	0	0	0	0	3891	1252	44	0	5013	0	CREBBP	16	3823824	Frame_Shift_Ins	INS	-	TCGA-AN-A0AT-01A-11D-A045-09	336299	3823824	86530929	72	32788										
ADCY9	0	genome.wustl.edu	37	chr16	4057542	4057542	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cttggctctctgacccgataTcaggtatgtcttcaaaccta	7	12	4	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	4057542	4057542	T	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.1711	p.I571L	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	104	0	0	78	36	31.58	-	-	-	A	4057542	T	A	4057542	3	1	286	1	0	0	0	0	1	0	0	0	301	1435	50	5	2386	5	ADCY9	16	4057542	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	233718	4057542	86297211	73	32789										
TFAP4	0	genome.wustl.edu	37	chr16	4312598	4312598	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgagggactggaatcccgcgTtgatgctctgcatgcgtctc	13	11	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	4312598	4312598	T	C	SNP	TFAP4	ENST00000204517	human	ensembl	69_37n	-1	known	missense	c.194	p.N65S	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFAP4	HGNC	ENSG00000090447	35	0	0	80	33	29.2	-	-	-	C	4312598	T	C	4312598	3	2	286	1	0	0	0	0	1	0	0	0	15887	1725	60	5	846	5	TFAP4	16	4312598	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	255056	4312598	86042155	74	32790										
VWA3A	0	genome.wustl.edu	37	chr16	22134947	22134947	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tctgcagcaacagctcagcaGagctatgcggatgtatgaga	12	9	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	22134947	22134947	G	C	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.1451	p.R484T	0.031	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	171	0	0	56	47	45.63	-	-	-	C	22134947	G	C	22134947	3	2	286	1	0	0	0	0	1	0	0	0	17337	942	33	2	1513	2	VWA3A	16	22134947	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	17822349	22134947	68219806	75	32791										
ITGAD	0	genome.wustl.edu	37	chr16	31422067	31422067	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ggcccctcaggttactccacCgagctagccctgtggaaggg	13	14	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	31422067	31422067	C	A	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	1	known	silent	c.1224	p.T408	0.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886	37	0	0	30	17	36.17	-	-	-	A	31422067	C	A	31422067	2	1	286	1	0	0	0	0	0	0	0	1	7938	639	23	3		3	ITGAD	16	31422067	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	9287120	31422067	58932686	76	32792										
NKD1	0	genome.wustl.edu	37	chr16	50664794	50664794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cactgaggacctgcggagctGggagaagaagcagcgagccc	16	11	0	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	50664794	50664794	G	T	SNP	NKD1	ENST00000268459	human	ensembl	69_37n	1	known	missense	c.668	p.W223L	0.999	NULL	pfscan_EF_HAND_2	-	no_errors	NKD1	HGNC	ENSG00000140807	119	0	0	34	18	34.62	-	-	-	T	50664794	G	T	50664794	3	4	286	1	0	0	0	0	1	0	0	0	10513	1357	47	4	698	4	NKD1	16	50664794	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	19242727	50664794	39689959	77	32793										
BBS2	0	genome.wustl.edu	37	chr16	56553673	56553673	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gttaccttgcccgtttgggtGgcggccgccaggcacgggtg	17	12	0	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	56553673	56553673	G	A	SNP	BBS2	ENST00000245157	human	ensembl	69_37n	-1	known	silent	c.102	p.A34	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124	38	0	0	72	28	28	-	-	-	A	56553673	G	A	56553673	2	1	286	1	0	0	0	0	0	0	0	1	1342	1335	47	4		4	BBS2	16	56553673	Silent	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	5888879	56553673	33801080	78	32794										
CTCF	0	genome.wustl.edu	37	chr16	67645308	67645308	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccccaggaagatcctagttgGcaaaaagacccagactatca	8	12	1	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	67645308	67645308	G	A	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	nonsense	c.573	p.W191*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	101	0	0	109	60	35.5	-	-	-	A	67645308	G	A	67645308	4	1	286	1	0	0	0	0	0	1	0	0	4032	1212	42	4	575	4	CTCF	16	67645308	Nonsense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	11091635	67645308	22709445	79	32795										
HYDIN	0	genome.wustl.edu	37	chr16	71098655	71098655	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gaggtcatcttgattggcaaGctggagtgttttctcatacg	12	7	3	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	16	71098655	71098655	G	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.2164	p.L722V	0.993	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	303	0	0	214	98	31.41	-	-	-	C	71098655	G	C	71098655	3	2	286	1	0	0	0	0	1	0	0	0	7521	971	34	4	13494	4	HYDIN	16	71098655	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	3453347	71098655	19256098	80	32796										
DHX40	0	genome.wustl.edu	37	chr17	57654510	57654510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aaagtgctgggattacaggcGtgagtcaccacgcccggcct	13	12	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	17	57654510	57654510	G	A	SNP	DHX40	ENST00000451169	human	ensembl	69_37n	1	known	missense	c.781	p.V261M	0.140	smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406	29	0	0	47	7	12.96	-	-	-	A	57654510	G	A	57654510	3	1	286	1	0	0	0	0	1	0	0	0	4548	1160	40	1		1	DHX40	17	57654510	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09		57654510	23540700	81	32797										
QRICH2	0	genome.wustl.edu	37	chr17	74288109	74288109	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ctgcaccaggctggaccaaaCcaggctgatctgcaccaggt	11	14	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	17	74288109	74288109	C	G	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.2201	p.G734A	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	58	0	0	161	44	21.46	-	-	-	G	74288109	C	G	74288109	3	3	286	1	0	0	0	0	1	0	0	0	12963	507	18	4	2854	4	QRICH2	17	74288109	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	16633599	74288109	6907101	82	32798										
SAFB2	0	genome.wustl.edu	37	chr19	5590388	5590388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ggccgtggcgctctgggggtCctccgtggccatggcggtca	18	13	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	5590388	5590388	C	T	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.2426	p.G809E	0.917	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	9	0	0	2	5	71.43	-	-	-	T	5590388	C	T	5590388	3	4	286	1	0	0	0	0	1	0	0	0	13893	855	30	2	451	2	SAFB2	19	5590388	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		5590388	53538595	83	32799										
TIMM44	0	genome.wustl.edu	37	chr19	7998974	7998974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tagcccaggactgggctcacCtgggagagggctctgaaggc	16	11	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	7998974	7998974	C	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	missense	c.543	p.Q181H	1.000	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	23	0	0	40	83	66.94	-	-	-	A	7998974	C	A	7998974	3	1	286	1	0	0	0	0	1	0	0	0	16007	695	24	4	851	4	TIMM44	19	7998974	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	2408586	7998974	51130009	84	32800										
SLC44A2	0	genome.wustl.edu	37	chr19	10742750	10742750	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	attgccatggcgatgagcctCctgttcatcatcctgcttcg	9	13	2	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	10742750	10742750	C	T	SNP	SLC44A2	ENST00000335757	human	ensembl	69_37n	1	known	silent	c.741	p.L247	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	66	0	0	178	526	74.61	-	-	-	T	10742750	C	T	10742750	2	4	286	1	0	0	0	0	0	0	0	1	14725	842	30	2		2	SLC44A2	19	10742750	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	2743776	10742750	48386233	85	32801										
TGFB1	0	genome.wustl.edu	37	chr19	41850696	41850696	+	Frame_Shift_Del	DEL	G	G	-													0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	caactccggtgacatcaaaaGataaccactctggcgagtcg							TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	41850696	41850696	G	-	DEL	TGFB1	ENST00000221930	human	ensembl	69_37n	-1	known	frame_shift_del	c.590	p.S197fs	1.000	pfam_TGF-b_N,pirsf_TGF-beta,prints_TGF-beta	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_TGFb1,prints_TGF-beta	-	no_errors	TGFB1	HGNC	ENSG00000105329	15	0	0	32	36	49.32	-	-	-	-	41850696	G	-	41850696	7	5	286	1	0	1	0	1	0	0	0	0	15911	942	33	0	602	0	TGFB1	19	41850696	Frame_Shift_Del	DEL	G	TCGA-AN-A0AT-01A-11D-A045-09	31107946	41850696	17278287	86	32802										
CEACAM21	0	genome.wustl.edu	37	chr19	42085765	42085765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cagtcacagagaagggctccGtggtcctgacctgccacaca	11	14	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	42085765	42085765	G	A	SNP	CEACAM21	ENST00000401445	human	ensembl	69_37n	1	known	missense	c.484	p.V162M	0.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM21	HGNC	ENSG00000007129	133	0	0	38	38	49.35	-	-	-	A	42085765	G	A	42085765	3	1	286	1	0	0	0	0	1	0	0	0	3221	1145	40	1	494	1	CEACAM21	19	42085765	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	235069	42085765	17043218	87	32803										
POU2F2	0	genome.wustl.edu	37	chr19	42626508	42626508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ctcctaacctgatgattagtGtctggtccatttctttcggt	8	10	2	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	42626508	42626508	G	C	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.117	p.D39E	0.998	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	121	0	0	221	41	15.65	-	-	-	C	42626508	G	C	42626508	3	2	286	1	0	0	0	0	1	0	0	0	12345	1368	48	4	1322	4	POU2F2	19	42626508	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	540743	42626508	16502475	88	32804										
KLK8	0	genome.wustl.edu	37	chr19	51503734	51503734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgccacctacaaggacaccgCcacagagtagttgctggccc	10	15	0	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	51503734	51503734	C	A	SNP	KLK8	ENST00000391806	human	ensembl	69_37n	-1	known	missense	c.311	p.G104V	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455	47	0	0	38	9	19.15	-	-	-	A	51503734	C	A	51503734	3	1	286	1	0	0	0	0	1	0	0	0	8463	739	26	4	622	4	KLK8	19	51503734	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	8877226	51503734	7625249	89	32805										
ZNF613	0	genome.wustl.edu	37	chr19	52448266	52448266	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gtcatatatatgccgtgattGtggaaaaggcttcattcaga	10	6	3	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	52448266	52448266	G	T	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	missense	c.1130	p.C377F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	91	0	0	173	72	29.39	-	-	-	T	52448266	G	T	52448266	3	4	286	1	0	0	0	0	1	0	0	0	18134	1377	48	4	1144	4	ZNF613	19	52448266	Missense_Mutation	SNP	G	TCGA-AN-A0AT-01A-11D-A045-09	944532	52448266	6680717	90	32806										
KIR2DL3	0	genome.wustl.edu	37	chr19	55250982	55250982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgctgcagggggcctggccaCatgagggtgagtccttctcc	15	12	1	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	55250982	55250982	C	T	SNP	KIR2DL3	ENST00000434419	human	ensembl	69_37n	1	known	missense	c.64	p.H22Y	0.041	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772	187	0	0	345	238	40.82	-	-	-	T	55250982	C	T	55250982	3	4	286	1	0	0	0	0	1	0	0	0	8370	478	17	4	70	4	KIR2DL3	19	55250982	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	2802716	55250982	3878001	91	32807										
ZIM3	0	genome.wustl.edu	37	chr19	57647274	57647274	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	atccattatcatcgtgagaaTtattttgtacatagtgttgc	7	6	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	19	57647274	57647274	T	A	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.431	p.N144I	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	197	0	0	183	78	29.89	-	-	-	A	57647274	T	A	57647274	3	1	286	1	0	0	0	0	1	0	0	0	17781	1493	52	5	991	5	ZIM3	19	57647274	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	2396292	57647274	1481709	92	32808										
SIGLEC1	0	genome.wustl.edu	37	chr20	3686511	3686511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gagggtctccaggtggccgaCgccggtgggctcaaacttct	15	12	3	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	20	3686511	3686511	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	missense	c.586	p.V196I	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	28	0	0	63	30	32.26	-	-	-	T	3686511	C	T	3686511	3	4	286	1	0	0	0	0	1	0	0	0	14394	536	19	1	4619	1	SIGLEC1	20	3686511	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		3686511	59339009	93	32809										
C20orf195	0	genome.wustl.edu	37	chr20	62187736	62187736	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	ccagccacatcggagcagtaTgagttgcgcttcaggctgct	12	12	1	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	20	62187736	62187736	T	C	SNP	C20orf195	ENST00000370097	human	ensembl	69_37n	1	known	silent	c.720	p.Y240	0.033	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	C20orf195	HGNC	ENSG00000125531	13	0	0	19	15	42.86	-	-	-	C	62187736	T	C	62187736	2	2	286	1	0	0	0	0	0	0	0	1	2120	1471	51	5		5	C20orf195	20	62187736	Silent	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	58501225	62187736	837784	94	32810										
MYO18B	0	genome.wustl.edu	37	chr22	26422671	26422671	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gctgtcgagggaaaagctgcCcagtccttcagcggccctct	12	14	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	22	26422671	26422671	C	G	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.6731	p.P2244R	0.998	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	63	0	0	42	18	30	-	-	-	G	26422671	C	G	26422671	3	3	286	1	0	0	0	0	1	0	0	0	10138	623	22	4	6897	4	MYO18B	22	26422671	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		26422671	24881895	95	32811										
KREMEN1	0	genome.wustl.edu	37	chr22	29521252	29521252	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tgcttctctgttgtggcagtTtgctgggatggagtcaggct	15	7	2	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	22	29521252	29521252	T	G	SNP	KREMEN1	ENST00000327813	human	ensembl	69_37n	1	known	missense	c.479	p.F160C	1.000	pirsf_Kremen,pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pirsf_Kremen,pfam_Kringle,pfam_WSC_carb-bd,pfam_CUB,superfamily_Kringle-like,superfamily_CUB,smart_Kringle,smart_WSC_carb-bd_subgr,smart_CUB,pfscan_CUB,pfscan_Kringle,pfscan_WSC_carb-bd	-	no_errors	KREMEN1	HGNC	ENSG00000183762	105	0	0	177	91	33.96	-	-	-	G	29521252	T	G	29521252	3	3	286	1	0	0	0	0	1	0	0	0	8495	1855	64	5	497	5	KREMEN1	22	29521252	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	3098581	29521252	21783314	96	32812										
NPTXR	0	genome.wustl.edu	37	chr22	39218758	39218758	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	cccaggacctgggctggtgtCagggcgtggtcccacaggtt	16	12	1	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	22	39218758	39218758	C	G	SNP	NPTXR	ENST00000333039	human	ensembl	69_37n	-1	known	silent	c.1359	p.L453	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	40	0	0	50	17	25.37	-	-	-	G	39218758	C	G	39218758	2	3	286	1	0	0	0	0	0	0	0	1	10677	813	29	2		2	NPTXR	22	39218758	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	9697506	39218758	12085808	97	32813										
VCX3B	0	genome.wustl.edu	37	chrX	8433833	8433833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gcagttcgtagagggagacgCgggaagaaaggggctgcgac	19	7	0	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	8433833	8433833	C	T	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	silent	c.150	p.R50	0.000	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	14	0	0	165	61	26.87	-	-	-	T	8433833	C	T	8433833	2	4	286	1	0	0	0	0	0	0	0	1	17242	755	27	1		1	VCX3B	23	8433833	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09		8433833	146836727	98	32814										
IQSEC2	0	genome.wustl.edu	37	chrX	53268410	53268410	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gagctgcatgtgcatttccaCgagggggaaagactgacgga	15	8	0	2			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	53268410	53268410	C	G	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3082	p.V1028L	1.000	smart_Pleckstrin_homology	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	358	0	0	178	44	19.82	-	-	-	G	53268410	C	G	53268410	3	3	286	1	0	0	0	0	1	0	0	0	7872	536	19	3	1404	3	IQSEC2	23	53268410	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	44834577	53268410	102002150	99	32815										
TEX13A	0	genome.wustl.edu	37	chrX	104464663	104464663	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	tcaccttgtctctctctttcTgcacctccacgaggctggtc	7	16	4	0			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	104464663	104464663	T	G	SNP	TEX13A	ENST00000413579	human	ensembl	69_37n	-1	known	missense	c.419	p.Q140P	0.001	NULL	pfam_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	TEX13A	HGNC	ENSG00000133149	38	0	0	24	14	36.84	-	-	-	G	104464663	T	G	104464663	3	3	286	1	0	0	0	0	1	0	0	0	15871	1580	55	5	820	5	TEX13A	23	104464663	Missense_Mutation	SNP	T	TCGA-AN-A0AT-01A-11D-A045-09	51196253	104464663	50805897	100	32816										
DOCK11	0	genome.wustl.edu	37	chrX	117814519	117814519	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	aagccttactttgatgacaaAgaactcacagaaaggaagac	8	8	1	5			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	117814519	117814519	A	G	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.5535	p.K1845	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	191	0	0	139	87	38.5	-	-	-	G	117814519	A	G	117814519	2	3	286	1	0	0	0	0	0	0	0	1	4721	69	3	5		5	DOCK11	23	117814519	Silent	SNP	A	TCGA-AN-A0AT-01A-11D-A045-09	13349856	117814519	37456041	101	32817										
UPF3B	0	genome.wustl.edu	37	chrX	118971940	118971940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	gcttcagcctctctctttctCgaagtatgcgctcctgatct	7	14	5	1			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	118971940	118971940	C	T	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	missense	c.1082	p.R361Q	0.355	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	239	0	0	316	84	20.95	-	-	-	T	118971940	C	T	118971940	3	4	286	1	0	0	0	0	1	0	0	0	17103	884	31	1	377	1	UPF3B	23	118971940	Missense_Mutation	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	1157421	118971940	36298620	102	32818										
SLC25A14	0	genome.wustl.edu	37	chrX	129483303	129483303	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.809468526516255	1.09204693611473	1.49438001784121	0.86040061633282	1	1	0	caaagcttgaagcgcttattCgtagaacgtttagaaggtca	10	7	1	3			TCGA-AN-A0AT-01A-11D-A045-09	TCGA-AN-A0AT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f848b66f-bd9e-4fba-afd4-eb58848d1ef4	1dab1c73-daeb-4900-9fa1-61656237024a	X	129483303	129483303	C	T	SNP	SLC25A14	ENST00000339231	human	ensembl	69_37n	1	known	silent	c.387	p.F129	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A14	HGNC	ENSG00000102078	286	0	0	192	39	16.88	-	-	-	T	129483303	C	T	129483303	2	4	286	1	0	0	0	0	0	0	0	1	14565	883	31	1		1	SLC25A14	23	129483303	Silent	SNP	C	TCGA-AN-A0AT-01A-11D-A045-09	10511363	129483303	25787257	103	32819										
BEND5	0	genome.wustl.edu	37	chr1	49242339	49242340	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cccagtcgcggggggcgcgcINSggggggctctcgggcccggc							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	1	49242339	49242340	-	G	INS	BEND5	ENST00000371833	human	ensembl	69_37n	-1	known	frame_shift_ins	c.165_164	p.R56fs	1.000:1.000	NULL	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	13	0	0	3	4	57.14	-	-	-	G	49242340	-	G	49242339	7	5	287	1	0	1	1	0	0	0	0	0	1405	755	27	0	1124	0	BEND5	1	49242339	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09		49242339	200008282	1	32820										
RWDD3	0	genome.wustl.edu	37	chr1	95710162	95710162	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	aatatgtcaaaattgtggagAagtgggcttcagatttaagg	12	3	2	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	1	95710162	95710162	A	T	SNP	RWDD3	ENST00000370202	human	ensembl	69_37n	1	known	nonsense	c.481	p.K161*	1.000	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	RWDD3	HGNC	ENSG00000122481	55	0	0	37	7	15.91	-	-	-	T	95710162	A	T	95710162	4	4	287	1	0	0	0	0	0	1	0	0	13843	247	9	5	487	5	RWDD3	1	95710162	Nonsense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09	46467823	95710162	153540459	2	32821										
POGZ	0	genome.wustl.edu	37	chr1	151378134	151378134	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ccaggaacaaagagatctcaTcaatagccacaatcatagac	6	11	3	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	1	151378134	151378134	T	C	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.3377	p.D1126G	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	202	1	0.49	134	62	31.63	-	-	-	C	151378134	T	C	151378134	3	2	287	1	0	0	0	0	1	0	0	0	12260	1435	50	5	859	5	POGZ	1	151378134	Missense_Mutation	SNP	T	TCGA-AN-A0FD-01A-11W-A050-09	55667972	151378134	97872487	3	32822										
TCHH	0	genome.wustl.edu	37	chr1	152084677	152084677	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	tctcctcctgctcgcgcctcAgctgctgctcgcgcctctcc	8	21	3	0			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	1	152084677	152084677	A	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.1016	p.L339Q	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	24	0	0	13	7	33.33	-	-	-	T	152084677	A	T	152084677	3	4	287	1	0	0	0	0	1	0	0	0	15795	188	7	5	4819	5	TCHH	1	152084677	Missense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09	706543	152084677	97165944	4	32823										
CFH	0	genome.wustl.edu	37	chr1	196684846	196684846	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	aagcaatactggaagcaccaCtggttccatagtgtgtggtt	11	8	0	0			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	1	196684846	196684846	C	G	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.1643	p.T548S	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	242	0	0	109	52	32.3	-	-	-	G	196684846	C	G	196684846	3	3	287	1	0	0	0	0	1	0	0	0	3312	565	20	4	1703	4	CFH	1	196684846	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	44600169	196684846	52565775	5	32824										
TMEM214	0	genome.wustl.edu	37	chr2	27259373	27259373	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	agttcctggaactgctgaggTcccaccagagccgaccagca	11	14	0	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	2	27259373	27259373	T	G	SNP	TMEM214	ENST00000238788	human	ensembl	69_37n	1	known	missense	c.739	p.S247A	0.906	pfam_DUF2359_TMEM214	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	133	0	0	68	43	38.74	-	-	-	G	27259373	T	G	27259373	3	3	287	1	0	0	0	0	1	0	0	0	16232	1667	58	5	761	5	TMEM214	2	27259373	Missense_Mutation	SNP	T	TCGA-AN-A0FD-01A-11W-A050-09		27259373	215940000	6	32825										
DCAF17	0	genome.wustl.edu	37	chr2	172300067	172300067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	caagaaaactttatgaaatgCcaaaatgttccaaatcagaa	5	7	1	3			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	2	172300067	172300067	C	G	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	1	known	missense	c.265	p.P89A	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	197	0	0	123	51	29.14	-	-	-	G	172300067	C	G	172300067	3	3	287	1	0	0	0	0	1	0	0	0	4301	739	26	4	275	4	DCAF17	2	172300067	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	145040694	172300067	70899306	7	32826										
SMARCAL1	0	genome.wustl.edu	37	chr2	217303196	217303196	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gcccgctgtcgagcagctatGccggtcctaaaggtgagtac	13	12	0	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	2	217303196	217303196	G	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.1698	p.M566I	0.999	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	72	0	0	38	23	37.7	-	-	-	T	217303196	G	T	217303196	3	4	287	1	0	0	0	0	1	0	0	0	14862	1319	46	4	1728	4	SMARCAL1	2	217303196	Missense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09	45003129	217303196	25896177	8	32827										
DNAJB3	0	genome.wustl.edu	37	chr2	234652187	234652188	+	RNA	INS	-	-	C													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ttccccagcagttcctctgaINScccccccaaaatattctcca							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	2	234652187	234652188	-	C	INS	DNAJB3	ENST00000449667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.050:0.014	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	51	0	0	54	6	10	-	-	-	C	234652188	-	C	234652187	6	5	287	0	1	1	1	0	0	0	0	0	4656	275	10	0		0	DNAJB3	2	234652187	RNA	INS	-	TCGA-AN-A0FD-01A-11W-A050-09	17348991	234652187	8547186	9	32828										
PTPN23	0	genome.wustl.edu	37	chr3	47450966	47450966	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	aaggtgtacctggagcagaaCctggccgcccaggaccgtgt	14	12	0	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	3	47450966	47450966	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	silent	c.1857	p.N619	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	63	0	0	48	24	33.33	-	-	-	T	47450966	C	T	47450966	2	4	287	1	0	0	0	0	0	0	0	1	12871	506	18	4		4	PTPN23	3	47450966	Silent	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09		47450966	150571464	10	32829										
ADPRH	0	genome.wustl.edu	37	chr3	119301234	119301234	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	tcttgtggaagctgggaaagCccctaagttgactcaactgt	11	9	2	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	3	119301234	119301234	C	A	SNP	ADPRH	ENST00000357003	human	ensembl	69_37n	1	known	missense	c.218	p.A73D	0.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843	109	0	0	62	28	31.11	-	-	-	A	119301234	C	A	119301234	3	1	287	1	0	0	0	0	1	0	0	0	331	739	26	4	220	4	ADPRH	3	119301234	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	71850268	119301234	78721196	11	32830										
PCDH18	0	genome.wustl.edu	37	chr4	138442550	138442550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ccagggaaggcggtaagagaCgctggaacacactgctcatt	13	10	1	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	4	138442550	138442550	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.3041	p.R1014H	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	47	0	0	13	13	50	-	-	-	T	138442550	C	T	138442550	3	4	287	1	0	0	0	0	1	0	0	0	11586	536	19	1	370	1	PCDH18	4	138442550	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09		138442550	52711726	12	32831										
WDR17	0	genome.wustl.edu	37	chr4	177041218	177041218	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ggaaagttgtgtttggtcatAttgatggaagtctatcaatt	11	3	3	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	4	177041218	177041218	A	C	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.580	p.I194L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	125	0	0	43	34	44.16	-	-	-	C	177041218	A	C	177041218	3	2	287	1	0	0	0	0	1	0	0	0	17374	449	16	5	594	5	WDR17	4	177041218	Missense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09	38598668	177041218	14113058	13	32832										
ZNF131	0	genome.wustl.edu	37	chr5	43161487	43161487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cagaacctgttgaaattgagGtagagattgccgaaggcacc	12	8	0	4			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	5	43161487	43161487	G	A	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.508	p.V170I	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	88	0	0	48	27	36	-	-	-	A	43161487	G	A	43161487	3	1	287	1	0	0	0	0	1	0	0	0	17817	1261	44	4	522	4	ZNF131	5	43161487	Missense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09		43161487	137753773	14	32833										
MRAP2	0	genome.wustl.edu	37	chr6	84799080	84799080	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	aggctcatgaagtttgacatCcccaactttgtgaacacaga	8	10	1	4			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	6	84799080	84799080	C	A	SNP	MRAP2	ENST00000257776	human	ensembl	69_37n	1	known	silent	c.498	p.I166	1.000	NULL	NULL	-	no_errors	MRAP2	HGNC	ENSG00000135324	232	0	0	115	53	31.36	-	-	-	A	84799080	C	A	84799080	2	1	287	1	0	0	0	0	0	0	0	1	9826	845	30	2		2	MRAP2	6	84799080	Silent	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09		84799080	86315987	15	32834										
HS3ST5	0	genome.wustl.edu	37	chr6	114379175	114379175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	tgcctcctttcctcaccccaAtgataatggccttggggagc	9	14	1	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	6	114379175	114379175	A	G	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	missense	c.287	p.I96T	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	86	0	0	49	24	32.88	-	-	-	G	114379175	A	G	114379175	3	3	287	1	0	0	0	0	1	0	0	0	7419	101	4	5	757	5	HS3ST5	6	114379175	Missense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09	29580095	114379175	56735892	16	32835										
MLLT4	0	genome.wustl.edu	37	chr6	168352254	168352254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cgccaaccagatagggctgcCgtctgcgcaggtggctgctg	15	13	1	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	6	168352254	168352254	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.4199	p.P1400L	0.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	111	0	0	47	27	36.49	-	-	-	T	168352254	C	T	168352254	3	4	287	1	0	0	0	0	1	0	0	0	9700	652	23	1	4313	1	MLLT4	6	168352254	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	53973079	168352254	2762813	17	32836										
TNRC18	0	genome.wustl.edu	37	chr7	5401258	5401259	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gccgctcttccctctcttgcINSgggggggcgacagggcgctc							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	7	5401258	5401259	-	G	INS	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4628_4627	p.R1543fs	1.000:0.999	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	37	0	0	34	4	10.53	-	-	-	G	5401259	-	G	5401258	7	5	287	1	0	1	1	0	0	0	0	0	16434	768	27	0	4346	0	TNRC18	7	5401258	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09		5401258	153737405	18	32837										
ABCA13	0	genome.wustl.edu	37	chr7	48443437	48443437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gtggggtggacccttgctccCggcatagcctgtgggacatt	15	11	0	0			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	7	48443437	48443437	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.12031	p.R4011W	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	179	0	0	97	56	36.6	-	-	-	T	48443437	C	T	48443437	3	4	287	1	0	0	0	0	1	0	0	0	31	643	23	1	12014	1	ABCA13	7	48443437	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	43042179	48443437	110695226	19	32838										
GATA3	0	genome.wustl.edu	37	chr10	8115832	8115833	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	aagaacagctcgtttaacccINSggccgccctctccagacaca							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	8115832	8115833	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1181_1182	p.A395fs	0.999:0.040	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	122	0	0	93	30	24.39	-	-	-	G	8115833	-	G	8115832	7	5	287	1	0	1	1	0	0	0	0	0	6305	652	23	0	1199	0	GATA3	10	8115832	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09		8115832	127418915	20	32839										
PTCHD3	0	genome.wustl.edu	37	chr10	27702950	27702951	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	atcgtccagcatcgacggccINSgggggggtgcatcgtccccc							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	27702950	27702951	-	G	INS	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	frame_shift_ins	c.230_229	p.R77fs	0.000:0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	21	0	0	29	5	14.71	-	-	-	G	27702951	-	G	27702950	7	5	287	1	0	1	1	0	0	0	0	0	12814	652	23	0	2089	0	PTCHD3	10	27702950	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09	19587118	27702950	107831797	21	32840										
WAC	0	genome.wustl.edu	37	chr10	28824639	28824640	+	Frame_Shift_Del	DEL	GT	GT	-													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cagtgacagcacaggtcacaGtaaggccaaaaatgtgcata							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	28824639	28824640	GT	-	DEL	WAC	ENST00000354911	human	ensembl	69_37n	1	known	frame_shift_del	c.227_228	p.S76fs	1.000:1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	151	0	0	101	45	30.2	-	-	-	-	28824640	GT	-	28824639	7	5	287	1	0	1	0	1	0	0	0	0	17344	1029	36	0	237	0	WAC	10	28824639	Frame_Shift_Del	DEL	GT	TCGA-AN-A0FD-01A-11W-A050-09	1121689	28824639	106710108	22	32841										
ZEB1	0	genome.wustl.edu	37	chr10	31815819	31815819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cagcacagagcaggaagaggCagggcctgaaatcctctcga	13	11	1	3			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	31815819	31815819	C	T	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.3005	p.A1002V	0.844	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	208	0	0	110	60	35.29	-	-	-	T	31815819	C	T	31815819	3	4	287	1	0	0	0	0	1	0	0	0	17719	710	25	4	3050	4	ZEB1	10	31815819	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	2991180	31815819	103718928	23	32842										
VDAC2	0	genome.wustl.edu	37	chr10	76982078	76982078	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	agatcttgacacttcagtaaAccttgcttggacatcaggta	8	9	3	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	76982078	76982078	A	T	SNP	VDAC2	ENST00000313132	human	ensembl	69_37n	1	known	missense	c.698	p.N233I	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC2	HGNC	ENSG00000165637	111	0	0	68	38	35.85	-	-	-	T	76982078	A	T	76982078	3	4	287	1	0	0	0	0	1	0	0	0	17244	43	2	5	759	5	VDAC2	10	76982078	Missense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09	45166259	76982078	58552669	24	32843										
ANXA11	0	genome.wustl.edu	37	chr10	81928877	81928878	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gcccctgggggctgctgtccINSggggggtggcatgggctggc							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	10	81928877	81928878	-	G	INS	ANXA11	ENST00000265447	human	ensembl	69_37n	-1	known	frame_shift_ins	c.409_408	p.G136fs	0.686:0.396	NULL	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXI,prints_AnnexinVII	-	no_errors	ANXA11	HGNC	ENSG00000122359	49	0	0	40	5	11.11	-	-	-	G	81928878	-	G	81928877	7	5	287	1	0	1	1	0	0	0	0	0	715	661	23	0	1156	0	ANXA11	10	81928877	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09	4946799	81928877	53605870	25	32844										
FAM111A	0	genome.wustl.edu	37	chr11	58920329	58920329	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	attgtgggagacggaatagaGccaagtaagtgggcaaccat	14	6	0	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	11	58920329	58920329	G	A	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	silent	c.1188	p.E396	0.005	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	167	0	0	95	47	33.1	-	-	-	A	58920329	G	A	58920329	2	1	287	1	0	0	0	0	0	0	0	1	5439	962	34	4		4	FAM111A	11	58920329	Silent	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09		58920329	76086187	26	32845										
MLL	0	genome.wustl.edu	37	chr11	118392845	118392845	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gatgccagcaacaagctgccCtgcaactgtggcgccaagaa	11	13	0	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	11	118392845	118392845	C	G	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.11868	p.P3956	1.000	smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_Post-SET_dom	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	81	0	0	16	62	79.49	-	-	-	G	118392845	C	G	118392845	2	3	287	1	0	0	0	0	0	0	0	1	9691	668	24	4		4	MLL	11	118392845	Silent	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	59472516	118392845	16613671	27	32846										
TAS2R8	0	genome.wustl.edu	37	chr12	10958729	10958729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	tattatttaaaacaattaaaAtaagtgagtgacccaagggg	8	4	0	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	12	10958729	10958729	A	G	SNP	TAS2R8	ENST00000240615	human	ensembl	69_37n	-1	known	missense	c.851	p.I284T	0.125	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R8	HGNC	ENSG00000121314	41	0	0	8	15	65.22	-	-	-	G	10958729	A	G	10958729	3	3	287	1	0	0	0	0	1	0	0	0	15679	101	4	5	81	5	TAS2R8	12	10958729	Missense_Mutation	SNP	A	TCGA-AN-A0FD-01A-11W-A050-09		10958729	122893166	28	32847										
DBX2	0	genome.wustl.edu	37	chr12	45410172	45410172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ctgggggtggtgcccctgaaCtctcctggattagtctttct	12	11	3	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	12	45410172	45410172	C	G	SNP	DBX2	ENST00000332700	human	ensembl	69_37n	-1	known	missense	c.917	p.S306T	0.017	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	191	0	0	108	55	33.74	-	-	-	G	45410172	C	G	45410172	3	3	287	1	0	0	0	0	1	0	0	0	4292	565	20	4	106	4	DBX2	12	45410172	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	34451443	45410172	88441723	29	32848										
CEP290	0	genome.wustl.edu	37	chr12	88533308	88533308	+	Frame_Shift_Del	DEL	C	C	-													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ttctccagctttttctacttCttccaaagccagctccactt							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	12	88533308	88533308	C	-	DEL	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	frame_shift_del	c.214	p.E72fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	63	0	0	59	18	22.5	-	-	-	-	88533308	C	-	88533308	7	5	287	1	0	1	0	1	0	0	0	0	3282	922	32	0	7429	0	CEP290	12	88533308	Frame_Shift_Del	DEL	C	TCGA-AN-A0FD-01A-11W-A050-09	43123136	88533308	45318587	30	32849										
ALDH1L2	0	genome.wustl.edu	37	chr12	105464512	105464512	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	taggcttctgccacttctttGatggtcttgcccttgaccct	8	13	3	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	12	105464512	105464512	G	C	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.264	p.I88M	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	161	0	0	165	22	11.76	-	-	-	C	105464512	G	C	105464512	3	2	287	1	0	0	0	0	1	0	0	0	495	1280	45	2	2591	2	ALDH1L2	12	105464512	Missense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09	16931204	105464512	28387383	31	32850										
KIF26A	0	genome.wustl.edu	37	chr14	104618523	104618524	+	Frame_Shift_Ins	INS	-	-	C													0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cagccatgaggaccttgacgINSccccccatggaggccccagc							TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	14	104618523	104618524	-	C	INS	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	frame_shift_ins	c.460_461	p.H156fs	0.009:0.002	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	13	0	0	8	3	27.27	-	-	-	C	104618524	-	C	104618523	7	5	287	1	0	1	1	0	0	0	0	0	8346	1087	38	0	470	0	KIF26A	14	104618523	Frame_Shift_Ins	INS	-	TCGA-AN-A0FD-01A-11W-A050-09		104618523	2731017	32	32851										
DGKE	0	genome.wustl.edu	37	chr17	54940026	54940026	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gtggatggggagccttgggcCcaagggccctgcactgtcac	16	12	1	0			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	17	54940026	54940026	C	A	SNP	DGKE	ENST00000284061	human	ensembl	69_37n	1	known	silent	c.1578	p.A526	0.994	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933	61	0	0	156	31	16.58	-	-	-	A	54940026	C	A	54940026	2	1	287	1	0	0	0	0	0	0	0	1	4504	610	22	4		4	DGKE	17	54940026	Silent	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09		54940026	26255184	33	32852										
ACE	0	genome.wustl.edu	37	chr17	61560393	61560393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	atctcatctcccaacagaaaGtgacatcaattacttgctaa	4	11	3	2			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	17	61560393	61560393	G	A	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.1346	p.S449N	0.991	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	50	0	0	32	20	38.46	-	-	-	A	61560393	G	A	61560393	3	1	287	1	0	0	0	0	1	0	0	0	136	1029	36	4	1380	4	ACE	17	61560393	Missense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09	6620367	61560393	19634817	34	32853										
RGS9	0	genome.wustl.edu	37	chr17	63221454	63221454	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	taaggcccgcatggctctgtCcttcagcaggtttctgagac	11	12	3	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	17	63221454	63221454	C	G	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	missense	c.1742	p.S581C	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	109	0	0	77	95	55.23	-	-	-	G	63221454	C	G	63221454	3	3	287	1	0	0	0	0	1	0	0	0	13397	855	30	2	1867	2	RGS9	17	63221454	Missense_Mutation	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	1661061	63221454	17973756	35	32854										
MAP4K1	0	genome.wustl.edu	37	chr19	39088180	39088180	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	tggggtttcctgctctggtcTctttccgttccagcaggcca	11	13	2	0			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	19	39088180	39088180	T	A	SNP	MAP4K1	ENST00000423454	human	ensembl	69_37n	-1	known	nonsense	c.649	p.R217*	0.993	NULL	pfam_Citron	-	no_errors	MAP4K1	HGNC	ENSG00000104814	172	0	0	146	19	11.52	-	-	-	A	39088180	T	A	39088180	4	1	287	1	0	0	0	0	0	1	0	0	9330	1551	54	5	879	5	MAP4K1	19	39088180	Nonsense_Mutation	SNP	T	TCGA-AN-A0FD-01A-11W-A050-09		39088180	20040803	36	32855										
TBL1X	0	genome.wustl.edu	37	chrX	9661417	9661417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	cccatctttgccttgaaatgGaaccgaaaggggaattacat	9	9	1	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	X	9661417	9661417	G	T	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	missense	c.1011	p.W337C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	191	0	0	34	49	59.04	-	-	-	T	9661417	G	T	9661417	3	4	287	1	0	0	0	0	1	0	0	0	15734	1183	41	2	1041	2	TBL1X	23	9661417	Missense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09		9661417	145609143	37	32856										
SYAP1	0	genome.wustl.edu	37	chrX	16737865	16737865	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	gggatgttccggggcttgagCagttggttgggcttgcagca	18	7	0	1			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	X	16737865	16737865	C	T	SNP	SYAP1	ENST00000380155	human	ensembl	69_37n	1	known	silent	c.18	p.S6	0.835	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895	10	0	0	5	9	64.29	-	-	-	T	16737865	C	T	16737865	2	4	287	1	0	0	0	0	0	0	0	1	15517	709	25	4		4	SYAP1	23	16737865	Silent	SNP	C	TCGA-AN-A0FD-01A-11W-A050-09	7076448	16737865	138532695	38	32857										
DOCK11	0	genome.wustl.edu	37	chrX	117788766	117788766	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.486821705426357	1.21705426356589	0	1	1	0	ccaagattcatgtaaaaaatGgagatttttcagaggtgact	9	5	2	4			TCGA-AN-A0FD-01A-11W-A050-09	TCGA-AN-A0FD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	abae6f4c-2378-4fbd-adea-f739e6629b22	9ac897b6-9cc0-47f6-ae50-b286c8ead24c	X	117788766	117788766	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	nonsense	c.4897	p.G1633*	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	159	0	0	46	70	60.34	-	-	-	T	117788766	G	T	117788766	4	4	287	1	0	0	0	0	0	1	0	0	4721	1349	47	4	5067	4	DOCK11	23	117788766	Nonsense_Mutation	SNP	G	TCGA-AN-A0FD-01A-11W-A050-09	101050901	117788766	37481794	39	32858										
PPIH	0	genome.wustl.edu	37	chr1	43124990	43124990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	tctggggctgcagtgagggtAtcggtgaaccacctgctggc	16	10	1	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	1	43124990	43124990	A	G	SNP	PPIH	ENST00000372549	human	ensembl	69_37n	1	known	missense	c.145	p.I49V	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom	-	no_errors	PPIH	HGNC	ENSG00000171960	248	0	0	194	23	10.55	-	-	-	G	43124990	A	G	43124990	3	3	288	1	0	0	0	0	1	0	0	0	12402	464	16	5		5	PPIH	1	43124990	Missense_Mutation	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09		43124990	206125631	1	32859										
NR1I3	0	genome.wustl.edu	37	chr1	161200619	161200619	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	gtaccgatcccggggccttcGctgctggcccttgatgtagc	13	14	0	1			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	1	161200619	161200619	G	A	SNP	NR1I3	ENST00000367979	human	ensembl	69_37n	-1	known	nonsense	c.928	p.R310*	0.419	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I3	HGNC	ENSG00000143257	214	0	0	296	51	14.66	-	-	-	A	161200619	G	A	161200619	4	1	288	1	0	0	0	0	0	1	0	0	10694	1095	38	1	248	1	NR1I3	1	161200619	Nonsense_Mutation	SNP	G	TCGA-AN-A0FF-01A-11W-A050-09	118075629	161200619	88050002	2	32860										
TTN	0	genome.wustl.edu	37	chr2	179547548	179547548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	taatcatattcttcatattcCtcatattcttcttcccgttg	2	11	6	0			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	2	179547548	179547548	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.29238	p.E9746	0.341	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	248	0	0	284	46	13.94	-	-	-	T	179547548	C	T	179547548	2	4	288	1	0	0	0	0	0	0	0	1	16832	680	24	4		4	TTN	2	179547548	Silent	SNP	C	TCGA-AN-A0FF-01A-11W-A050-09		179547548	63651825	3	32861										
SPEG	0	genome.wustl.edu	37	chr2	220333726	220333726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	ggccaggcccactgctcagcCcagctgtatgtagaagagcc	12	14	1	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	2	220333726	220333726	C	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	silent	c.3447	p.A1149	0.837	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	38	0	0	18	13	41.94	-	-	-	T	220333726	C	T	220333726	2	4	288	1	0	0	0	0	0	0	0	1	15127	610	22	4		4	SPEG	2	220333726	Silent	SNP	C	TCGA-AN-A0FF-01A-11W-A050-09	40786178	220333726	22865647	4	32862										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	67	52	43.7	-	-	-	G	178952085	A	G	178952085	3	3	288	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09		178952085	19070345	5	32863										
UBA6	0	genome.wustl.edu	37	chr4	68536192	68536192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	attaatataatcatacttgcGttatgtttgaaatgaaaatt	5	3	1	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	4	68536192	68536192	G	A	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.665	p.T222M	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	78	0	0	52	6	10.34	-	-	-	A	68536192	G	A	68536192	3	1	288	1	0	0	0	0	1	0	0	0	16929	1145	40	1	2597	1	UBA6	4	68536192	Missense_Mutation	SNP	G	TCGA-AN-A0FF-01A-11W-A050-09		68536192	122618084	6	32864										
HEATR7B2	0	genome.wustl.edu	37	chr5	41057211	41057211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	cttctggatgctggtcctacCtagaatgagaaaacagcttg	10	9	1	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	5	41057211	41057211	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.919	p.A307T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	187	0	0	139	38	21.47	-	-	-	T	41057211	C	T	41057211	3	4	288	1	0	0	0	0	1	0	0	0	7086	695	24	4	3974	4	HEATR7B2	5	41057211	Missense_Mutation	SNP	C	TCGA-AN-A0FF-01A-11W-A050-09		41057211	139858049	7	32865										
PCDHA2	0	genome.wustl.edu	37	chr5	140176837	140176838	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	agggtgtgctctggggaggaINScccccccaagacggacctca							TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	5	140176837	140176838	-	C	INS	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	frame_shift_ins	c.2288_2289	p.K766fs	0.292:0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	54	0	0	56	7	11.11	-	-	-	C	140176838	-	C	140176837	7	5	288	1	0	1	1	0	0	0	0	0	11597	275	10	0	2290	0	PCDHA2	5	140176837	Frame_Shift_Ins	INS	-	TCGA-AN-A0FF-01A-11W-A050-09	99119626	140176837	40738423	8	32866										
SNAPC3	0	genome.wustl.edu	37	chr9	15444655	15444655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	agcagacatgattgaagaagGggagcttatcctatctgtga	12	6	1	5			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	9	15444655	15444655	G	A	SNP	SNAPC3	ENST00000380821	human	ensembl	69_37n	1	known	missense	c.533	p.G178E	1.000	NULL	pfam_snRNA-activating_su3	-	no_errors	SNAPC3	HGNC	ENSG00000164975	180	0	0	196	35	15.15	-	-	-	A	15444655	G	A	15444655	3	1	288	1	0	0	0	0	1	0	0	0	14925	1232	43	4	547	4	SNAPC3	9	15444655	Missense_Mutation	SNP	G	TCGA-AN-A0FF-01A-11W-A050-09		15444655	125768776	9	32867										
PRPF18	0	genome.wustl.edu	37	chr10	13642249	13642249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	tggctattaatatagatacaGccaaaagaggaggaccagaa	10	6	0	3			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	10	13642249	13642249	G	A	SNP	PRPF18	ENST00000378572	human	ensembl	69_37n	1	known	silent	c.150	p.Q50	1.000	NULL	pfam_Prp18,pfam_PRP4,superfamily_Prp18,smart_SFM	-	no_errors	PRPF18	HGNC	ENSG00000165630	148	0	0	123	68	35.6	-	-	-	A	13642249	G	A	13642249	2	1	288	1	0	0	0	0	0	0	0	1	12644	962	34	4		4	PRPF18	10	13642249	Silent	SNP	G	TCGA-AN-A0FF-01A-11W-A050-09		13642249	121892498	10	32868										
PDCD11	0	genome.wustl.edu	37	chr10	105172930	105172930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	gagttgtgcacctgagcctgCgccccatcttcctacagcct	9	16	1	1			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	10	105172930	105172930	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.1036	p.R346C	1.000	superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	97	0	0	74	9	10.84	-	-	-	T	105172930	C	T	105172930	3	4	288	1	0	0	0	0	1	0	0	0	11690	768	27	1	1066	1	PDCD11	10	105172930	Missense_Mutation	SNP	C	TCGA-AN-A0FF-01A-11W-A050-09	91530681	105172930	30361817	11	32869										
OR8H1	0	genome.wustl.edu	37	chr11	56058466	56058466	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	aaatagtataaagagggccaTctggacctcttcagaatctg	9	8	4	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	11	56058466	56058466	T	A	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	missense	c.73	p.M25L	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	100	0	0	78	31	28.44	-	-	-	A	56058466	T	A	56058466	3	1	288	1	0	0	0	0	1	0	0	0	11310	1435	50	5	864	5	OR8H1	11	56058466	Missense_Mutation	SNP	T	TCGA-AN-A0FF-01A-11W-A050-09		56058466	78948050	12	32870										
GOLGA3	0	genome.wustl.edu	37	chr12	133384597	133384599	+	In_Frame_Del	DEL	TCC	TCC	-													0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	aggggaactggcccagggtaTccgcaggaatctcctggccg							TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	12	133384597	133384599	TCC	-	DEL	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	in_frame_del	c.1058_1056	p.D353in_frame_del	0.136:0.129:0.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	47	0	0	20	7	23.33	-	-	-	-	133384599	TCC	-	133384597	7	5	288	1	0	1	0	1	0	0	0	0	6606	1435	50	0	3656	0	GOLGA3	12	133384597	In_Frame_Del	DEL	TCC	TCGA-AN-A0FF-01A-11W-A050-09		133384597	467298	13	32871										
SEC14L5	0	genome.wustl.edu	37	chr16	5061151	5061152	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	ctccagtggcaaatgcacagINScccccccagcagcgtggcct							TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	16	5061151	5061152	-	C	INS	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	frame_shift_ins	c.1856_1857	p.S622fs	0.002:0.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	42	0	0	27	5	15.62	-	-	-	C	5061152	-	C	5061151	7	5	288	1	0	1	1	0	0	0	0	0	14073	971	34	0	1910	0	SEC14L5	16	5061151	Frame_Shift_Ins	INS	-	TCGA-AN-A0FF-01A-11W-A050-09		5061151	85293602	14	32872										
WDR81	0	genome.wustl.edu	37	chr17	1628873	1628874	+	Frame_Shift_Ins	INS	-	-	C													0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	tatgccagagaaggcccctgINScccccctcggggcagccctg							TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	17	1628873	1628874	-	C	INS	WDR81	ENST00000409644	human	ensembl	69_37n	1	known	frame_shift_ins	c.620_621	p.R210fs	0.025:0.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	10	0	0	4	2	33.33	-	-	-	C	1628874	-	C	1628873	7	5	288	1	0	1	1	0	0	0	0	0	17427	1319	46	0	684	0	WDR81	17	1628873	Frame_Shift_Ins	INS	-	TCGA-AN-A0FF-01A-11W-A050-09		1628873	79566337	15	32873										
DNAH2	0	genome.wustl.edu	37	chr17	7664193	7664193	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	gatcaacaaggactccttcaTtcatcgctaccagcgcctca	6	15	4	0			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	17	7664193	7664193	T	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.2921	p.I974T	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	286	1	0.35	162	108	40	-	-	-	C	7664193	T	C	7664193	3	2	288	1	0	0	0	0	1	0	0	0	4638	1493	52	5	2987	5	DNAH2	17	7664193	Missense_Mutation	SNP	T	TCGA-AN-A0FF-01A-11W-A050-09	6035320	7664193	73531017	16	32874										
AKAP8L	0	genome.wustl.edu	37	chr19	15491335	15491335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	accagtgcctcaccttcaggTagcgctccagcttcttgctg	9	15	3	0			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	19	15491335	15491335	T	C	SNP	AKAP8L	ENST00000397410	human	ensembl	69_37n	-1	known	missense	c.1625	p.Y542C	1.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243	42	0	0	10	5	33.33	-	-	-	C	15491335	T	C	15491335	3	2	288	1	0	0	0	0	1	0	0	0	458	1638	57	5	323	5	AKAP8L	19	15491335	Missense_Mutation	SNP	T	TCGA-AN-A0FF-01A-11W-A050-09		15491335	43637648	17	32875										
MEGF8	0	genome.wustl.edu	37	chr19	42858174	42858174	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	ccgacagcagcaccccctgcAcggtgagcactgaggaaacg	12	15	0	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	19	42858174	42858174	A	G	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.4009	p.T1337A	1.000	superfamily_CUB,pfscan_CUB	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	63	0	0	27	18	40	-	-	-	G	42858174	A	G	42858174	3	3	288	1	0	0	0	0	1	0	0	0	9534	159	6	5	3890	5	MEGF8	19	42858174	Missense_Mutation	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09	27366839	42858174	16270809	18	32876										
ZNF234	0	genome.wustl.edu	37	chr19	44660780	44660780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	ccacatgggagagaaatgctAtaagtgtgacgtgtgtggta	14	5	0	2			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	19	44660780	44660780	A	G	SNP	ZNF234	ENST00000426739	human	ensembl	69_37n	1	known	missense	c.611	p.Y204C	0.039	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	153	1	0.65	141	76	35.02	-	-	-	G	44660780	A	G	44660780	3	3	288	1	0	0	0	0	1	0	0	0	17883	449	16	5	625	5	ZNF234	19	44660780	Missense_Mutation	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09	1802606	44660780	14468203	19	32877										
CYP24A1	0	genome.wustl.edu	37	chr20	52774114	52774114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	ccaacacctgggtatttagcAtgagcactgtctaaacacat	7	11	1	1			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	20	52774114	52774114	A	G	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	missense	c.1247	p.M416T	0.998	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	40	0	0	44	13	22.81	-	-	-	G	52774114	A	G	52774114	3	3	288	1	0	0	0	0	1	0	0	0	4185	217	8	5	305	5	CYP24A1	20	52774114	Missense_Mutation	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09		52774114	10251406	20	32878										
GNAS	0	genome.wustl.edu	37	chr20	57470704	57470705	+	Frame_Shift_Ins	INS	-	-	A													0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	aaagcaccattgtgaagcagINSatgaggatcctgcatgttaa							TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	20	57470704	57470705	-	A	INS	GNAS	ENST00000354359	human	ensembl	69_37n	1	known	frame_shift_ins	c.177_178	p.M59fs	0.994:1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	195	0	0	166	42	20.19	-	-	-	A	57470705	-	A	57470704	7	5	288	1	0	1	1	0	0	0	0	0	6562	933	33	0	2997	0	GNAS	20	57470704	Frame_Shift_Ins	INS	-	TCGA-AN-A0FF-01A-11W-A050-09	4696590	57470704	5554816	21	32879										
MED14	0	genome.wustl.edu	37	chrX	40511087	40511087	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	cccaccagggggcagtgtaaGattagccattaaatcacgaa	10	10	1	1			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	X	40511087	40511087	G	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.4336	p.L1446F	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	111	0	0	44	22	33.33	-	-	-	A	40511087	G	A	40511087	3	1	288	1	0	0	0	0	1	0	0	0	9503	942	33	2	32	2	MED14	23	40511087	Missense_Mutation	SNP	G	TCGA-AN-A0FF-01A-11W-A050-09		40511087	114759473	22	32880										
RBM3	0	genome.wustl.edu	37	chrX	48433737	48433737	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.989410657549952	0.708333333333333	NA	0.708333333333333	1	1	0	gggatccttgcatttcaaggAgtattaactgaaaagttagg	11	5	1	1			TCGA-AN-A0FF-01A-11W-A050-09	TCGA-AN-A0FF-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd45e46c-50bf-449e-bb40-29ccffbbd49c	51960d24-2753-46e9-ab1d-e1b41c0ad0c5	X	48433737	48433737	A	G	SNP	RBM3	ENST00000491240	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RBM3	HGNC	ENSG00000102317	81	0	0	46	14	23.33	-	-	-	G	48433737	A	G	48433737	1	3	288	0	1	0	0	0	0	0	0	0	13212	319	11	5		5	RBM3	23	48433737	RNA	SNP	A	TCGA-AN-A0FF-01A-11W-A050-09	7922650	48433737	106836823	23	32881										
MYOM3	0	genome.wustl.edu	37	chr1	24384096	24384096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aggggtggggtctcctgagaCgatgcaagtcaagcacaggg	17	8	2	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	24384096	24384096	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.4081	p.V1361I	0.877	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	88	0	0	61	32	34.41	-	-	-	T	24384096	C	T	24384096	3	4	289	1	0	0	0	0	1	0	0	0	10165	536	19	1	245	1	MYOM3	1	24384096	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		24384096	224866525	1	32882										
HDAC1	0	genome.wustl.edu	37	chr1	32797323	32797323	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgctgccgcacgcacctgggGtccaaatgcaggcgattcct	12	14	0	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	32797323	32797323	G	T	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	missense	c.1135	p.V379F	1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	148	0	0	43	20	31.75	-	-	-	T	32797323	G	T	32797323	3	4	289	1	0	0	0	0	1	0	0	0	7055	1261	44	4	1177	4	HDAC1	1	32797323	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	8413227	32797323	216453298	2	32883										
TRIT1	0	genome.wustl.edu	37	chr1	40307548	40307548	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gagtccaatcttcttcttttCttcagttggttcaagtggga	9	8	6	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	40307548	40307548	C	G	SNP	TRIT1	ENST00000316891	human	ensembl	69_37n	-1	known	missense	c.1272	p.K424N	1.000	smart_Znf_U1	pfam_IPPT,pfam_Isopentenyl_transferase,pfam_Znf_C2H2_jaz,smart_Znf_U1,tigrfam_tRNA_delta_PyrP_Trfase	-	no_errors	TRIT1	HGNC	ENSG00000043514	233	0	0	145	90	38.3	-	-	-	G	40307548	C	G	40307548	3	3	289	1	0	0	0	0	1	0	0	0	16656	912	32	2	135	2	TRIT1	1	40307548	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	7510225	40307548	208943073	3	32884										
EIF2B3	0	genome.wustl.edu	37	chr1	45323458	45323458	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	atcacagcattgttgcagatGacactgccttggatattgct	9	9	1	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	45323458	45323458	G	A	SNP	EIF2B3	ENST00000360403	human	ensembl	69_37n	-1	known	silent	c.1224	p.V408	1.000	NULL	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785	194	0	0	103	57	35.62	-	-	-	A	45323458	G	A	45323458	2	1	289	1	0	0	0	0	0	0	0	1	5037	1277	45	2		2	EIF2B3	1	45323458	Silent	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	5015910	45323458	203927163	4	32885										
DOCK7	0	genome.wustl.edu	37	chr1	62970310	62970310	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aaaatacttacattcccaatCtcaaagttttgcctcattag	3	10	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	62970310	62970310	C	G	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4728	p.E1576D	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	104	0	0	55	46	45.54	-	-	-	G	62970310	C	G	62970310	3	3	289	1	0	0	0	0	1	0	0	0	4727	912	32	2	1723	2	DOCK7	1	62970310	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	17646852	62970310	186280311	5	32886										
ROR1	0	genome.wustl.edu	37	chr1	64515374	64515374	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgctcacagattcttacctgAccctcgatgaaccaatgaat	6	12	2	4			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	64515374	64515374	A	T	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.175	p.T59S	0.998	pirsf_Tyr_kinase_rcpt_ROR,pfscan_Ig-like	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	172	0	0	142	42	22.83	-	-	-	T	64515374	A	T	64515374	3	4	289	1	0	0	0	0	1	0	0	0	13612	275	10	5	185	5	ROR1	1	64515374	Missense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09	1545064	64515374	184735247	6	32887										
DNAJC6	0	genome.wustl.edu	37	chr1	65855273	65855273	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ccagacaaccccaggcattaCggacaaagtggtttctttgc	9	12	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	65855273	65855273	C	A	SNP	DNAJC6	ENST00000371069	human	ensembl	69_37n	1	known	nonsense	c.1431	p.Y477*	0.055	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DnaJ_N,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	DNAJC6	HGNC	ENSG00000116675	321	0	0	145	93	38.91	-	-	-	A	65855273	C	A	65855273	4	1	289	1	0	0	0	0	0	1	0	0	4688	547	19	3	1302	3	DNAJC6	1	65855273	Nonsense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	1339899	65855273	183395348	7	32888										
SLC44A5	0	genome.wustl.edu	37	chr1	75693466	75693466	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	atgcttatgttagtctgaatCccgatgtcatagatagttaa	8	6	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	75693466	75693466	C	T	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	silent	c.930	p.G310	0.992	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	122	0	0	77	17	18.09	-	-	-	T	75693466	C	T	75693466	2	4	289	1	0	0	0	0	0	0	0	1	14728	842	30	2		2	SLC44A5	1	75693466	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	9838193	75693466	173557155	8	32889										
CD2	0	genome.wustl.edu	37	chr1	117297341	117297341	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gacattcctagttttcaaatGagtgatgatattgacgatat	8	5	1	4			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	117297341	117297341	G	C	SNP	CD2	ENST00000369478	human	ensembl	69_37n	1	known	missense	c.150	p.M50I	0.000	pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	pfam_Ig_C2-set,pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	-	no_errors	CD2	HGNC	ENSG00000116824	132	0	0	48	56	53.85	-	-	-	C	117297341	G	C	117297341	3	2	289	1	0	0	0	0	1	0	0	0	3008	1290	45	2	156	2	CD2	1	117297341	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	41603875	117297341	131953280	9	32890										
FDPS	0	genome.wustl.edu	37	chr1	155290280	155290280	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ctggatctgccagcagtgttCttgcaatatgaggaagacag	12	8	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	155290280	155290280	C	T	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	silent	c.1140	p.F380	0.642	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	97	0	0	155	38	19.69	-	-	-	T	155290280	C	T	155290280	2	4	289	1	0	0	0	0	0	0	0	1	5849	912	32	2		2	FDPS	1	155290280	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	37992939	155290280	93960341	10	32891										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209951472	209951472	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tcagatcaactaaaaaggtcAgaggcagagaaactcaccct	8	10	4	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	209951472	209951472	A	G	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	silent	c.1206	p.S402	0.997	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	240	0	0	134	21	13.46	-	-	-	G	209951472	A	G	209951472	2	3	289	1	0	0	0	0	0	0	0	1	16538	175	7	5		5	TRAF3IP3	1	209951472	Silent	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09	54661192	209951472	39299149	11	32892										
PRSS38	0	genome.wustl.edu	37	chr1	228005112	228005112	+	Missense_Mutation	SNP	G	G	T													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ccgtgctcccggtttgccttGcaactccagaagtgaacctt							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	228005112	228005112	G	T	SNP	PRSS38	ENST00000366757	human	ensembl	69_37n	1	known	missense	c.514	p.A172S	0.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS38	HGNC	ENSG00000185888	55	0	0	43	21	32.81	-	-	-	T	228005112	G	T	228005112	3	4	289	1	0	0	0	0	1	0	0	0	12707	1319	46	4	524	4	PRSS38	1	228005112	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	18053640	228005112	21245509	12	32893	263	2								
PRSS38	0	genome.wustl.edu	37	chr1	228005113	228005113	+	Missense_Mutation	SNP	C	C	T													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cgtgctcccggtttgccttgCaactccagaagtgaacctta							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	228005113	228005113	C	T	SNP	PRSS38	ENST00000366757	human	ensembl	69_37n	1	known	missense	c.515	p.A172V	0.008	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS38	HGNC	ENSG00000185888	55	0	0	44	22	33.33	-	-	-	T	228005113	C	T	228005113	3	4	289	1	0	0	0	0	1	0	0	0	12707	710	25	4	525	4	PRSS38	1	228005113	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	1	228005113	21245508	13	32894	263	2								
C1orf101	0	genome.wustl.edu	37	chr1	244798805	244798805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttgcagtttctgtaacctaaCagctatgtttgcaatagaga	8	7	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	1	244798805	244798805	C	T	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.2663	p.T888I	0.072	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	90	0	0	65	8	10.96	-	-	-	T	244798805	C	T	244798805	3	4	289	1	0	0	0	0	1	0	0	0	1995	478	17	4	2745	4	C1orf101	1	244798805	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	16793692	244798805	4451816	14	32895										
AGBL5	0	genome.wustl.edu	37	chr2	27293023	27293026	+	Frame_Shift_Del	DEL	TCTA	TCTA	-													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttttctcctatatcctgtagTctatctgactccccatcctg							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	TCTA	TCTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	27293023	27293026	TCTA	-	DEL	AGBL5	ENST00000360131	human	ensembl	69_37n	1	known	frame_shift_del	c.2553_2556	p.S853fs	0.984:0.972:0.932:0.075	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	117	0	0	51	6	10.17	-	-	-	-	27293026	TCTA	-	27293023	7	5	289	1	0	1	0	1	0	0	0	0	378	1664	58	0	2672	0	AGBL5	2	27293023	Frame_Shift_Del	DEL	TCTA	TCGA-AN-A0FJ-01A-11W-A019-09		27293023	215906350	15	32896										
EFEMP1	0	genome.wustl.edu	37	chr2	56145073	56145073	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgtttcctgctgaggctgttCattattgacaataatctggg	10	7	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	56145073	56145073	C	T	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	missense	c.244	p.E82K	1.000	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	110	0	0	91	40	30.53	-	-	-	T	56145073	C	T	56145073	3	4	289	1	0	0	0	0	1	0	0	0	4976	835	29	2	1269	2	EFEMP1	2	56145073	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	28852050	56145073	187054300	16	32897										
USP34	0	genome.wustl.edu	37	chr2	61622132	61622132	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	agcaaatgcaatggtacttcTacatcctgggaaaataaaga	8	7	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	61622132	61622132	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	silent	c.609	p.V203	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	101	0	0	47	33	41.25	-	-	-	C	61622132	T	C	61622132	2	2	289	1	0	0	0	0	0	0	0	1	17162	1509	53	5		5	USP34	2	61622132	Silent	SNP	T	TCGA-AN-A0FJ-01A-11W-A019-09	5477059	61622132	181577241	17	32898										
EIF2AK3	0	genome.wustl.edu	37	chr2	88858435	88858435	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aagatgagaattacacatacCtcacaaggatatttctgagt	7	7	2	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	88858435	88858435	C	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	missense	c.3150	p.E1050D	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	63	0	0	28	20	41.67	-	-	-	A	88858435	C	A	88858435	3	1	289	1	0	0	0	0	1	0	0	0	5033	695	24	4	208	4	EIF2AK3	2	88858435	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	27236303	88858435	154340938	18	32899										
THSD7B	0	genome.wustl.edu	37	chr2	138000128	138000128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgagtggacaccctgcccaaGgatgtgccaagcaggtaggt	14	10	0	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	138000128	138000128	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.2252	p.R751K	0.004	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	61	0	0	44	23	34.33	-	-	-	A	138000128	G	A	138000128	3	1	289	1	0	0	0	0	1	0	0	0	15975	1000	35	4	2193	4	THSD7B	2	138000128	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	49141693	138000128	105199245	19	32900										
COBLL1	0	genome.wustl.edu	37	chr2	165551305	165551305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tctgcatctgcaaaaaaaaaGagctgggtttggcctgggca	12	8	2	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	165551305	165551305	G	C	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.2912	p.S971C	1.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	88	0	0	77	42	35.29	-	-	-	C	165551305	G	C	165551305	3	2	289	1	0	0	0	0	1	0	0	0	3684	942	33	2	801	2	COBLL1	2	165551305	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	27551177	165551305	77648068	20	32901										
TTN	0	genome.wustl.edu	37	chr2	179449464	179449464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgccaaatcggttttcagcaCggacccggaagatgtactcc	10	12	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	179449464	179449464	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.57200	p.R19067P	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	330	0	0	292	46	13.61	-	-	-	G	179449464	C	G	179449464	3	3	289	1	0	0	0	0	1	0	0	0	16832	536	19	3	43287	3	TTN	2	179449464	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	13898159	179449464	63749909	21	32902										
CREB1	0	genome.wustl.edu	37	chr2	208434996	208434996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	acttcagcacctgccatcacCactgtaacggtgccaactcc	6	17	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	208434996	208434996	C	T	SNP	CREB1	ENST00000418081	human	ensembl	69_37n	1	known	missense	c.296	p.P99L	0.998	NULL	pfam_Coactivator_CBP_pKID,pfscan_Coactivator_CBP_pKID,prints_Leuzip_CREB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CREB1	HGNC	ENSG00000118260	267	0	0	206	73	26.16	-	-	-	T	208434996	C	T	208434996	3	4	289	1	0	0	0	0	1	0	0	0	3884	581	21	4	516	4	CREB1	2	208434996	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	28985532	208434996	34764377	22	32903										
COPS8	0	genome.wustl.edu	37	chr2	237994668	237994668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aaaagttgctggatcagtgcGagaaccaggagctcgaggta	14	7	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	2	237994668	237994668	G	A	SNP	COPS8	ENST00000354371	human	ensembl	69_37n	1	known	missense	c.61	p.E21K	1.000	NULL	pfam_COP9_signalosome_subunit_CSN8	-	no_errors	COPS8	HGNC	ENSG00000198612	9	0	0	5	5	50	-	-	-	A	237994668	G	A	237994668	3	1	289	1	0	0	0	0	1	0	0	0	3770	1059	37	1	63	1	COPS8	2	237994668	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	29559672	237994668	5204705	23	32904										
OR5H1	0	genome.wustl.edu	37	chr3	97851825	97851825	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gagtaagatgatatctctctCtgaatgcaagatacagtttt	8	6	2	4			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	3	97851825	97851825	C	G	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.284	p.S95C	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	625	0	0	346	185	34.77	-	-	-	G	97851825	C	G	97851825	3	3	289	1	0	0	0	0	1	0	0	0	11232	913	32	2	286	2	OR5H1	3	97851825	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		97851825	100170605	24	32905										
AFF1	0	genome.wustl.edu	37	chr4	87967342	87967342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tacaatgacgacagaaacctGcttcgaattagagagaagga	10	7	0	4			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	4	87967342	87967342	G	A	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	silent	c.63	p.L21	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	456	0	0	96	183	65.59	-	-	-	A	87967342	G	A	87967342	2	1	289	1	0	0	0	0	0	0	0	1	356	1306	46	4		4	AFF1	4	87967342	Silent	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		87967342	103186934	25	32906										
CCDC110	0	genome.wustl.edu	37	chr4	186383863	186383863	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tccaactgctgctgaaggacCtatgacaaaagtaaagtatg	9	8	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	4	186383863	186383863	C	G	SNP	CCDC110	ENST00000307588	human	ensembl	69_37n	-1	known	splice_site	c.172-1	e4-1	1.000	-	-	-	no_errors	CCDC110	HGNC	ENSG00000168491	69	0	0	12	21	63.64	-	-	-	G	186383863	C	G	186383863	5	3	289	1	0	0	0	0	0	0	1	0	2772	695	24	4	2346	4	CCDC110	4	186383863	Splice_Site	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	98416521	186383863	4770413	26	32907										
FBXL7	0	genome.wustl.edu	37	chr5	15936870	15936870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	agatcgccaagctggagtccCgcctgcggtacctgagcatc	12	14	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	5	15936870	15936870	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	69_37n	1	known	missense	c.1051	p.R351C	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL7	HGNC	ENSG00000183580	31	0	0	35	15	29.41	-	-	-	T	15936870	C	T	15936870	3	4	289	1	0	0	0	0	1	0	0	0	5770	652	23	1	1065	1	FBXL7	5	15936870	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		15936870	164978390	27	32908										
NIPBL	0	genome.wustl.edu	37	chr5	36985957	36985957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	acaaaaatcaagacctgacaGtcctcgtgttaaacaaggag	8	9	1	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	5	36985957	36985957	G	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.2675	p.S892I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	235	0	0	379	142	27.26	-	-	-	T	36985957	G	T	36985957	3	4	289	1	0	0	0	0	1	0	0	0	10500	1029	36	4	2709	4	NIPBL	5	36985957	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	21049087	36985957	143929303	28	32909										
SNRPC	0	genome.wustl.edu	37	chr6	34738134	34738134	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ccctcccatgatgccaatgaTgggccctcctcctcctggga	9	17	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	6	34738134	34738134	T	C	SNP	SNRPC	ENST00000374017	human	ensembl	69_37n	1	known	missense	c.380	p.M127T	1.000	pirsf_U1_snRNP-C	pfam_Znf_U1-C,smart_Znf_U1,pirsf_U1_snRNP-C,pfscan_Znf_C2H2_matrin	-	no_errors	SNRPC	HGNC	ENSG00000124562	88	0	0	51	9	15	-	-	-	C	34738134	T	C	34738134	3	2	289	1	0	0	0	0	1	0	0	0	14952	1464	51	5	335	5	SNRPC	6	34738134	Missense_Mutation	SNP	T	TCGA-AN-A0FJ-01A-11W-A019-09		34738134	136376933	29	32910										
DST	0	genome.wustl.edu	37	chr6	56482819	56482819	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aaccttcaccagttccatttCacatgcgttatcttgatacc	4	13	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	6	56482819	56482819	C	T	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.6013	p.E2005K	0.992	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	187	0	0	118	99	45.62	-	-	-	T	56482819	C	T	56482819	3	4	289	1	0	0	0	0	1	0	0	0	4818	835	29	2	14390	2	DST	6	56482819	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	21744685	56482819	114632248	30	32911										
EPHA7	0	genome.wustl.edu	37	chr6	93956553	93956553	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tttcagactatttgggtttcGaatcattttgtctagaattc	7	6	3	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	6	93956553	93956553	G	C	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	missense	c.2683	p.R895G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	263	1	0.38	94	38	28.79	-	-	-	C	93956553	G	C	93956553	3	2	289	1	0	0	0	0	1	0	0	0	5209	1066	37	3	325	3	EPHA7	6	93956553	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	37473734	93956553	77158514	31	32912										
FBXL4	0	genome.wustl.edu	37	chr6	99322245	99322245	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	caatctgcgaacagaaggacAcatcaagtaaagaaagatct	8	8	3	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	6	99322245	99322245	A	G	SNP	FBXL4	ENST00000229971	human	ensembl	69_37n	-1	known	missense	c.1775	p.V592A	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL4	HGNC	ENSG00000112234	291	0	0	124	79	38.92	-	-	-	G	99322245	A	G	99322245	3	3	289	1	0	0	0	0	1	0	0	0	5767	159	6	5	94	5	FBXL4	6	99322245	Missense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09	5365692	99322245	71792822	32	32913										
ECHDC1	0	genome.wustl.edu	37	chr6	127611347	127611347	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ccgattatttcaactagccgGgtggtgccaccccagcttgg	11	13	1	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	6	127611347	127611347	G	T	SNP	ECHDC1	ENST00000436638	human	ensembl	69_37n	-1	novel	missense	c.614	p.P205H	0.288	pfam_Crotonase_core	pfam_Crotonase_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ECHDC1	HGNC	ENSG00000093144	223	0	0	47	78	62.4	-	-	-	T	127611347	G	T	127611347	3	4	289	1	0	0	0	0	1	0	0	0	4928	1219	43	4	336	4	ECHDC1	6	127611347	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	28289102	127611347	43503720	33	32914										
WBSCR28	0	genome.wustl.edu	37	chr7	73279502	73279502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgggctgggctggctctgatAcaggtccccgtatggctggt	16	10	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	7	73279502	73279502	A	G	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	missense	c.252	p.I84M	0.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	125	0	0	89	38	29.69	-	-	-	G	73279502	A	G	73279502	3	3	289	1	0	0	0	0	1	0	0	0	17364	381	14	5	258	5	WBSCR28	7	73279502	Missense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09		73279502	85859161	34	32915										
PON3	0	genome.wustl.edu	37	chr7	94993187	94993187	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gagcttacttctggtctgctGagactgtgatcccattggca	11	10	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	7	94993187	94993187	G	A	SNP	PON3	ENST00000265627	human	ensembl	69_37n	-1	known	missense	c.683	p.S228L	1.000	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	350	0	0	240	131	35.31	-	-	-	A	94993187	G	A	94993187	3	1	289	1	0	0	0	0	1	0	0	0	12324	1294	45	2	397	2	PON3	7	94993187	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	21713685	94993187	64145476	35	32916										
LGI3	0	genome.wustl.edu	37	chr8	22006360	22006360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cgcacgcgctgcgggtcaatGtcttgcagcctggtgaagcg	15	12	2	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	8	22006360	22006360	G	C	SNP	LGI3	ENST00000306317	human	ensembl	69_37n	-1	known	missense	c.960	p.D320E	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481	33	0	0	21	11	34.38	-	-	-	C	22006360	G	C	22006360	3	2	289	1	0	0	0	0	1	0	0	0	8808	1368	48	4	690	4	LGI3	8	22006360	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		22006360	124357662	36	32917										
ASH2L	0	genome.wustl.edu	37	chr8	37996363	37996363	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aactttggaccatgcttcaaGtatcctccgaaggatctcac	7	12	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	8	37996363	37996363	G	T	SNP	ASH2L	ENST00000343823	human	ensembl	69_37n	1	known	missense	c.1749	p.K583N	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691	309	0	0	224	60	21.13	-	-	-	T	37996363	G	T	37996363	3	4	289	1	0	0	0	0	1	0	0	0	1046	1020	36	4	1807	4	ASH2L	8	37996363	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	15990003	37996363	108367659	37	32918										
PRKDC	0	genome.wustl.edu	37	chr8	48765336	48765336	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gacatattattcaccaaagcCtggaagtatctacaataaac	5	9	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	8	48765336	48765336	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.6900	p.Q2300H	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	21	0	0	9	5	35.71	-	-	-	A	48765336	C	A	48765336	3	1	289	1	0	0	0	0	1	0	0	0	12602	680	24	4	5623	4	PRKDC	8	48765336	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	10768973	48765336	97598686	38	32919										
TTPA	0	genome.wustl.edu	37	chr8	63978649	63978649	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gctgtaaaaactttggggtcCcagtgtgctaaaaaaaataa	9	6	0	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	8	63978649	63978649	C	G	SNP	TTPA	ENST00000260116	human	ensembl	69_37n	-1	known	missense	c.366	p.W122C	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561	108	0	0	84	30	26.32	-	-	-	G	63978649	C	G	63978649	3	3	289	1	0	0	0	0	1	0	0	0	16833	624	22	4	482	4	TTPA	8	63978649	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	15213313	63978649	82385373	39	32920										
ARMC3	0	genome.wustl.edu	37	chr10	23326258	23326258	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cgcggagagtacggtagagcGtggaatgaagtcatgctgca	16	7	1	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	10	23326258	23326258	G	A	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	silent	c.2469	p.A823	0.174	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	67	0	0	51	10	16.39	-	-	-	A	23326258	G	A	23326258	2	1	289	1	0	0	0	0	0	0	0	1	956	1132	40	1		1	ARMC3	10	23326258	Silent	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		23326258	112208489	40	32921										
IPMK	0	genome.wustl.edu	37	chr10	59956131	59956131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gtatatattttcctgtgacgCgcatacatcttggacaagct	8	9	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	10	59956131	59956131	C	T	SNP	IPMK	ENST00000373935	human	ensembl	69_37n	-1	known	silent	c.957	p.A319	0.003	pfam_IPK	pfam_IPK	-	no_errors	IPMK	HGNC	ENSG00000151151	328	0	0	250	52	17.22	-	-	-	T	59956131	C	T	59956131	2	4	289	1	0	0	0	0	0	0	0	1	7846	755	27	1		1	IPMK	10	59956131	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	36629873	59956131	75578616	41	32922										
DNMBP	0	genome.wustl.edu	37	chr10	101668763	101668763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aatacacatttccagatcccGaatgtagtctctttctgtct	5	11	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	10	101668763	101668763	G	A	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.2401	p.R801W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	106	0	0	40	27	40.3	-	-	-	A	101668763	G	A	101668763	3	1	289	1	0	0	0	0	1	0	0	0	4709	1057	37	1	2384	1	DNMBP	10	101668763	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	41712632	101668763	33865984	42	32923										
MUC6	0	genome.wustl.edu	37	chr11	1015883	1015883	+	Frame_Shift_Del	DEL	C	C	-													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gacaaggtgggaccagggtgCctggtggtaaggttggtgac							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	11	1015883	1015883	C	-	DEL	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_del	c.6918	p.R2306fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	16	0	0	11	6	35.29	-	-	-	-	1015883	C	-	1015883	7	5	289	1	0	1	0	1	0	0	0	0	10052	738	26	0	413	0	MUC6	11	1015883	Frame_Shift_Del	DEL	C	TCGA-AN-A0FJ-01A-11W-A019-09		1015883	133990633	43	32924	264	2								
MUC6	0	genome.wustl.edu	37	chr11	1015892	1015893	+	Frame_Shift_Ins	INS	-	-	G													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gaccagggtgcctggtggtaINSaggttggtgactggagaggt							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	11	1015892	1015893	-	G	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6909_6908	p.T2304fs	0.146:0.046	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	14	0	0	9	6	40	-	-	-	G	1015893	-	G	1015892	7	5	289	1	0	1	1	0	0	0	0	0	10052	349	13	0	422	0	MUC6	11	1015892	Frame_Shift_Ins	INS	-	TCGA-AN-A0FJ-01A-11W-A019-09	9	1015892	133990624	44	32925	264	2								
SCUBE2	0	genome.wustl.edu	37	chr11	9080884	9080884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tcatctgttaataatttaaaTcctttcttgcagccgcagtc	5	10	3	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	11	9080884	9080884	T	C	SNP	SCUBE2	ENST00000519788	human	ensembl	69_37n	-1	novel	missense	c.227	p.D76G	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCUBE2	HGNC	ENSG00000175356	45	0	0	26	20	42.55	-	-	-	C	9080884	T	C	9080884	3	2	289	1	0	0	0	0	1	0	0	0	14033	1422	50	5	2090	5	SCUBE2	11	9080884	Missense_Mutation	SNP	T	TCGA-AN-A0FJ-01A-11W-A019-09	8064992	9080884	125925632	45	32926										
MICALCL	0	genome.wustl.edu	37	chr11	12315451	12315451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	agaagaccgggaaaaagggaGtactggagccaggaaggaag	17	5	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	11	12315451	12315451	G	T	SNP	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	missense	c.473	p.S158I	0.000	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	199	0	0	214	50	18.94	-	-	-	T	12315451	G	T	12315451	3	4	289	1	0	0	0	0	1	0	0	0	9643	1029	36	4	479	4	MICALCL	11	12315451	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	3234567	12315451	122691065	46	32927										
MTMR2	0	genome.wustl.edu	37	chr11	95583906	95583906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttattctccagctttcatttGgaattccctacatgtgaaat	5	9	2	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	11	95583906	95583906	G	A	SNP	MTMR2	ENST00000346299	human	ensembl	69_37n	-1	known	missense	c.662	p.P221L	1.000	NULL	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053	272	0	0	127	49	27.68	-	-	-	A	95583906	G	A	95583906	3	1	289	1	0	0	0	0	1	0	0	0	10016	1348	47	4	1301	4	MTMR2	11	95583906	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	83268455	95583906	39422610	47	32928										
SP1	0	genome.wustl.edu	37	chr12	53775484	53775484	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	aaatgacagctgtggtgaaaAttgaaaaaggagttggtggc	14	3	0	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	12	53775484	53775484	A	T	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.49	p.I17F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	69	0	0	18	7	28	-	-	-	T	53775484	A	T	53775484	3	4	289	1	0	0	0	0	1	0	0	0	15048	101	4	5	55	5	SP1	12	53775484	Missense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09		53775484	80076411	48	32929										
KIF5A	0	genome.wustl.edu	37	chr12	57976912	57976912	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgccgtgtggctatgaggctGaggaccaggccaagcttttc	14	10	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	12	57976912	57976912	G	A	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	missense	c.3049	p.E1017K	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	59	0	0	40	24	37.5	-	-	-	A	57976912	G	A	57976912	3	1	289	1	0	0	0	0	1	0	0	0	8357	1291	45	2	3159	2	KIF5A	12	57976912	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	4201428	57976912	75874983	49	32930										
MGAT4C	0	genome.wustl.edu	37	chr12	86373693	86373693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	taataaaaaatgggccaaacGtgggagatcatgagaatgat	11	4	1	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	12	86373693	86373693	G	A	SNP	MGAT4C	ENST00000393205	human	ensembl	69_37n	-1	known	missense	c.898	p.R300C	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050	101	0	0	79	43	34.96	-	-	-	A	86373693	G	A	86373693	3	1	289	1	0	0	0	0	1	0	0	0	9618	1145	40	1	629	1	MGAT4C	12	86373693	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	28396781	86373693	47478202	50	32931										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20220931	20220931	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gtgaaataagagatttaaagAcgaaaacaagagaagatccc	9	5	0	5			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	13	20220931	20220931	A	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.718	p.T240S	0.580	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	172	0	0	68	76	52.78	-	-	-	T	20220931	A	T	20220931	3	4	289	1	0	0	0	0	1	0	0	0	9799	275	10	5	728	5	MPHOSPH8	13	20220931	Missense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09		20220931	94948947	51	32932										
RNF219	0	genome.wustl.edu	37	chr13	79190455	79190455	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cgtgttcccctctgaactttCaaaatctaagttttgggcat	7	10	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	13	79190455	79190455	C	G	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.1441	p.E481Q	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	277	0	0	209	130	38.35	-	-	-	G	79190455	C	G	79190455	3	3	289	1	0	0	0	0	1	0	0	0	13568	835	29	2	743	2	RNF219	13	79190455	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	58969524	79190455	35979423	52	32933										
FARP1	0	genome.wustl.edu	37	chr13	99083458	99083458	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ctgcggccactgcaccggctCatgcactacaagcaggtcct	10	16	1	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	13	99083458	99083458	C	T	SNP	FARP1	ENST00000376586	human	ensembl	69_37n	1	known	silent	c.2067	p.L689	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP1	HGNC	ENSG00000152767	17	0	0	8	20	71.43	-	-	-	T	99083458	C	T	99083458	2	4	289	1	0	0	0	0	0	0	0	1	5722	813	29	2		2	FARP1	13	99083458	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	19893003	99083458	16086420	53	32934										
KCNH5	0	genome.wustl.edu	37	chr14	63416872	63416872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gccaaccatcatcatagccaCcgaaaacatcttctccacat	3	16	4	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	14	63416872	63416872	C	A	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	missense	c.1348	p.V450L	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	373	0	0	158	56	26.17	-	-	-	A	63416872	C	A	63416872	3	1	289	1	0	0	0	0	1	0	0	0	8089	507	18	4	1672	4	KCNH5	14	63416872	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		63416872	43932668	54	32935										
BRF1	0	genome.wustl.edu	37	chr14	105695250	105695250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttctggctgcaaccaggagcGctggaaggcaacgagacggg	16	10	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	14	105695250	105695250	G	A	SNP	BRF1	ENST00000546474	human	ensembl	69_37n	-1	known	missense	c.695	p.A232V	0.999	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB,pfscan_Znf_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024	23	0	0	6	5	45.45	-	-	-	A	105695250	G	A	105695250	3	1	289	1	0	0	0	0	1	0	0	0	1518	1101	38	1	1386	1	BRF1	14	105695250	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	42278378	105695250	1654290	55	32936										
PLA2G4F	0	genome.wustl.edu	37	chr15	42442039	42442039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gccaaggcgtaggtctaggtCcccggagctgcctcaagtag	14	12	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	15	42442039	42442039	C	T	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.931	p.D311N	1.000	smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	44	0	0	18	8	30.77	-	-	-	T	42442039	C	T	42442039	3	4	289	1	0	0	0	0	1	0	0	0	12080	855	30	2	1658	2	PLA2G4F	15	42442039	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		42442039	60089353	56	32937										
RFX7	0	genome.wustl.edu	37	chr15	56387080	56387080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gagtgggtgtgggtgtgggtGtgggtgtgtggattggagtg	25	0	0	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	15	56387080	56387080	G	A	SNP	RFX7	ENST00000423270	human	ensembl	69_37n	-1	known	missense	c.2846	p.T949I	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	75	0	0	26	35	57.38	-	-	-	A	56387080	G	A	56387080	3	1	289	1	0	0	0	0	1	0	0	0	13351	1377	48	4	1540	4	RFX7	15	56387080	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	13945041	56387080	46144312	57	32938										
ITGA11	0	genome.wustl.edu	37	chr15	68695306	68695306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cactgtgtagccaaagaaggCggtcctggagccagggatga	15	9	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	15	68695306	68695306	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.115	p.A39T	0.961	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	39	0	0	7	18	72	-	-	-	T	68695306	C	T	68695306	3	4	289	1	0	0	0	0	1	0	0	0	7928	768	27	1	3567	1	ITGA11	15	68695306	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	12308226	68695306	33836086	58	32939										
C16orf91	0	genome.wustl.edu	37	chr16	1470148	1470148	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cagccaagtccttcagtgctGaggacgcacgcatagccagg	12	13	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	16	1470148	1470148	G	C	SNP	C16orf91	ENST00000310355	human	ensembl	69_37n	-1	known	silent	c.867	p.L289	0.000	NULL	prints_CCSMST1	-	no_errors	C16orf91	HGNC	ENSG00000174109	75	0	0	34	22	39.29	-	-	-	C	1470148	G	C	1470148	2	2	289	1	0	0	0	0	0	0	0	1	1857	1277	45	2		2	C16orf91	16	1470148	Silent	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		1470148	88884605	59	32940										
ANKS4B	0	genome.wustl.edu	37	chr16	21261779	21261779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	agagagagtttggttttaaaCtgcccagtgaattgcttcaa	10	6	1	3			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	16	21261779	21261779	C	A	SNP	ANKS4B	ENST00000311620	human	ensembl	69_37n	1	known	missense	c.892	p.L298M	0.064	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKS4B	HGNC	ENSG00000175311	170	0	0	115	82	41.62	-	-	-	A	21261779	C	A	21261779	3	1	289	1	0	0	0	0	1	0	0	0	690	564	20	4	898	4	ANKS4B	16	21261779	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	19791631	21261779	69092974	60	32941										
HEATR3	0	genome.wustl.edu	37	chr16	50112756	50112756	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttttgggaatggatgctggtGaaatggttattcaaatgaaa	12	2	1	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	16	50112756	50112756	G	T	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	nonsense	c.868	p.E290*	0.007	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	103	0	0	51	38	42.7	-	-	-	T	50112756	G	T	50112756	4	4	289	1	0	0	0	0	0	1	0	0	7080	1291	45	2	894	2	HEATR3	16	50112756	Nonsense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	28850977	50112756	40241997	61	32942										
NOD2	0	genome.wustl.edu	37	chr16	50733855	50733855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	caggttgccgatcttcacacCgtcccagagggtgaggcact	12	13	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	16	50733855	50733855	C	G	SNP	NOD2	ENST00000300589	human	ensembl	69_37n	1	known	missense	c.530	p.P177R	0.295	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207	50	0	0	20	15	42.86	-	-	-	G	50733855	C	G	50733855	3	3	289	1	0	0	0	0	1	0	0	0	10589	652	23	3	536	3	NOD2	16	50733855	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	621099	50733855	39620898	62	32943										
OR1A2	0	genome.wustl.edu	37	chr17	3101670	3101670	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	accccagcattaaatcctttCatctatagtctgagaaattg	5	10	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	17	3101670	3101670	C	G	SNP	OR1A2	ENST00000381951	human	ensembl	69_37n	1	known	missense	c.858	p.F286L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150	332	0	0	82	105	56.15	-	-	-	G	3101670	C	G	3101670	3	3	289	1	0	0	0	0	1	0	0	0	11023	825	29	2	860	2	OR1A2	17	3101670	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		3101670	78093540	63	32944										
TP53	0	genome.wustl.edu	37	chr17	7578460	7578461	+	Frame_Shift_Ins	INS	-	-	G													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gtagatggccatggcgcggaINScgcgggtgccgggcgggggt							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	17	7578460	7578461	-	G	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.470_469	p.V157fs	0.906:0.032	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0	21	16	43.24	-	-	-	G	7578461	-	G	7578460	7	5	289	1	0	1	1	0	0	0	0	0	16477	275	10	0	828	0	TP53	17	7578460	Frame_Shift_Ins	INS	-	TCGA-AN-A0FJ-01A-11W-A019-09	4476790	7578460	73616750	64	32945	265	2								
TP53	0	genome.wustl.edu	37	chr17	7578465	7578465	+	Silent	SNP	G	G	T													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	atggccatggcgcggacgcgGgtgccgggcgggggtgtgga							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	17	7578465	7578465	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	silent	c.465	p.T155	0.012	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	87	0	0	19	22	52.38	-	-	-	T	7578465	G	T	7578465	2	4	289	1	0	0	0	0	0	0	0	1	16477	1219	43	4		4	TP53	17	7578465	Silent	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	5	7578465	73616745	65	32946	265	2								
MUC16	0	genome.wustl.edu	37	chr19	9062300	9062300	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cccatggtgtaggtggtaccCattggagatgtggctttggg	16	7	0	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	9062300	9062300	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.25146	p.M8382I	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	246	0	0	244	142	36.6	-	-	-	A	9062300	C	A	9062300	3	1	289	1	0	0	0	0	1	0	0	0	10045	594	21	4	18705	4	MUC16	19	9062300	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		9062300	50066683	66	32947										
ZGLP1	0	genome.wustl.edu	37	chr19	10415800	10415800	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	atggggtccagggacactccAcatctgccacatagcctctt	9	14	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	10415800	10415800	A	T	SNP	ZGLP1	ENST00000403903	human	ensembl	69_37n	-1	known	nonsense	c.783	p.C261*	0.995	NULL	pfam_Znf_GATA,smart_Znf_GATA,prints_Znf_GATA,pfscan_Znf_GATA	-	no_errors	ZGLP1	HGNC	ENSG00000220201	27	0	0	13	6	31.58	-	-	-	T	10415800	A	T	10415800	4	4	289	1	0	0	0	0	0	1	0	0	17769	157	6	5	36	5	ZGLP1	19	10415800	Nonsense_Mutation	SNP	A	TCGA-AN-A0FJ-01A-11W-A019-09	1353500	10415800	48713183	67	32948										
HAUS8	0	genome.wustl.edu	37	chr19	17169632	17169632	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tgttttcacctttacggataGtagcgtcagcagtagtgtct	10	8	3	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	17169632	17169632	G	C	SNP	HAUS8	ENST00000253669	human	ensembl	69_37n	-1	known	missense	c.475	p.L159V	0.180	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351	116	0	0	113	101	46.54	-	-	-	C	17169632	G	C	17169632	3	2	289	1	0	0	0	0	1	0	0	0	7023	1020	36	4	777	4	HAUS8	19	17169632	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	6753832	17169632	41959351	68	32949										
HAPLN4	0	genome.wustl.edu	37	chr19	19381108	19381108	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gtgggggcaggtgggagactCagacgggcagtgcggtaggg	23	6	1	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	19381108	19381108	C	T	SNP	HAPLN4	ENST00000586064	human	ensembl	69_37n	-1	known	missense	c.343	p.E115K	0.893	NULL	NULL	-	no_errors	AC138430.4	Clone_based_vega_gene	ENSG00000267629	29	0	0	20	9	31.03	-	-	-	T	19381108	C	T	19381108	3	4	289	1	0	0	0	0	1	0	0	0	7008	841	29	2		2	HAPLN4	19	19381108	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	2211476	19381108	39747875	69	32950										
ZNF626	0	genome.wustl.edu	37	chr19	20807492	20807492	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttgccacattcttcacatttGtagggtttctctccagtatg	7	10	3	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	20807492	20807492	G	C	SNP	ZNF626	ENST00000305570	human	ensembl	69_37n	-1	known	nonsense	c.1191	p.Y397*	0.222	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	438	0	0	289	173	37.45	-	-	-	C	20807492	G	C	20807492	4	2	289	1	0	0	0	0	0	1	0	0	18146	1372	48	4	399	4	ZNF626	19	20807492	Nonsense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	1426384	20807492	38321491	70	32951										
GPR77	0	genome.wustl.edu	37	chr19	47844232	47844232	+	Frame_Shift_Del	DEL	T	T	-													0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	caatgccatggtggcctgggTggctgggaaggtggcccgcc							TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	47844232	47844232	T	-	DEL	GPR77	ENST00000257267	human	ensembl	69_37n	1	known	frame_shift_del	c.176	p.V59fs	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_C5A_anaphtx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_C5A_anaphtx_rcpt	-	no_errors	GPR77	HGNC	ENSG00000134830	28	0	0	32	19	36.54	-	-	-	-	47844232	T	-	47844232	7	5	289	1	0	1	0	1	0	0	0	0	6759	1696	59	0	178	0	GPR77	19	47844232	Frame_Shift_Del	DEL	T	TCGA-AN-A0FJ-01A-11W-A019-09	27036740	47844232	11284751	71	32952										
MYH14	0	genome.wustl.edu	37	chr19	50735280	50735280	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gcgggaactcttccaggagaCgctggagtcgctgcgggtcc	16	12	1	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	50735280	50735280	C	G	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.1067	p.T356R	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	66	0	0	21	15	41.67	-	-	-	G	50735280	C	G	50735280	3	3	289	1	0	0	0	0	1	0	0	0	10105	536	19	3	1101	3	MYH14	19	50735280	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	2891048	50735280	8393703	72	32953										
ZNF578	0	genome.wustl.edu	37	chr19	53007922	53007922	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ttttagggacgcttgactttCagggatgtggctatagaatt	12	5	1	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	53007922	53007922	C	T	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	silent	c.78	p.F26	0.835	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	371	2	0.54	193	201	50.89	-	-	-	T	53007922	C	T	53007922	2	4	289	1	0	0	0	0	0	0	0	1	18106	825	29	2		2	ZNF578	19	53007922	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	2272642	53007922	6121061	73	32954										
ZNF71	0	genome.wustl.edu	37	chr19	57133197	57133197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	catccaccagcgggtgcacaCgggcgagaagccctatgcct	12	15	0	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	19	57133197	57133197	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	69_37n	1	known	missense	c.542	p.T181M	0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	69	0	0	47	29	37.66	-	-	-	T	57133197	C	T	57133197	3	4	289	1	0	0	0	0	1	0	0	0	18210	536	19	1	544	1	ZNF71	19	57133197	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	4125275	57133197	1995786	74	32955										
DIP2A	0	genome.wustl.edu	37	chr21	47904738	47904738	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cacgttatataccgcttattCaaggtaaggtcaatacactc	6	10	2	0			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	21	47904738	47904738	C	G	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.160	p.Q54E	1.000	pfam_DMAP1-bd	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	24	0	0	17	5	22.73	-	-	-	G	47904738	C	G	47904738	3	3	289	1	0	0	0	0	1	0	0	0	4563	827	29	2	166	2	DIP2A	21	47904738	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09		47904738	225157	75	32956										
POLR2F	0	genome.wustl.edu	37	chr22	38422077	38422077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gctgcctgctcttcagagaaGgttttggtggaggactcccc	13	11	2	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	22	38422077	38422077	G	T	SNP	POLR2F	ENST00000333418	human	ensembl	69_37n	1	putative	missense	c.322	p.G108C	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	POLR2F	HGNC	ENSG00000100142	106	0	0	73	38	34.23	-	-	-	T	38422077	G	T	38422077	3	4	289	1	0	0	0	0	1	0	0	0	12293	1015	35	4		4	POLR2F	22	38422077	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		38422077	12882489	76	32957										
EFCAB6	0	genome.wustl.edu	37	chr22	43950819	43950819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cctctctggagatggtgttcGttttcatggtgtcaaaattc	10	8	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	22	43950819	43950819	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.3578	p.T1193M	0.000	smart_EF_hand_Ca-bd	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	87	0	0	49	25	33.78	-	-	-	A	43950819	G	A	43950819	3	1	289	1	0	0	0	0	1	0	0	0	4974	1145	40	1	951	1	EFCAB6	22	43950819	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	5528742	43950819	7353747	77	32958										
TRAPPC2	0	genome.wustl.edu	37	chrX	13734771	13734771	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	tcgagagcagcatgagctatGaactggttcagatgacgatg	13	7	1	5			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	13734771	13734771	G	C	SNP	TRAPPC2	ENST00000453655	human	ensembl	69_37n	-1	known	missense	c.120	p.F40L	1.000	pfam_Sedlin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2	HGNC	ENSG00000196459	63	0	0	13	20	60.61	-	-	-	C	13734771	G	C	13734771	3	2	289	1	0	0	0	0	1	0	0	0	16554	1281	45	2	314	2	TRAPPC2	23	13734771	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09		13734771	141535789	78	32959										
DYNLT3	0	genome.wustl.edu	37	chrX	37700304	37700304	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	cagatgtggtatcccaaaaaCaggagctggctgtgtgaaag	13	7	0	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	37700304	37700304	C	G	SNP	DYNLT3	ENST00000378581	human	ensembl	69_37n	-1	known	missense	c.251	p.C84S	0.995	pfam_Tctex	pfam_Tctex	-	no_errors	DYNLT3	HGNC	ENSG00000165169	133	0	0	54	24	30.77	-	-	-	G	37700304	C	G	37700304	3	3	289	1	0	0	0	0	1	0	0	0	4888	478	17	4	107	4	DYNLT3	23	37700304	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	23965533	37700304	117570256	79	32960										
PQBP1	0	genome.wustl.edu	37	chrX	48760064	48760064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	gaccctagctcatactcagaCgccccccggtaagtgacaac	8	16	2	2			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	48760064	48760064	C	T	SNP	PQBP1	ENST00000456306	human	ensembl	69_37n	1	known	missense	c.314	p.T105M	0.994	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PQBP1	HGNC	ENSG00000102103	29	0	0	5	12	70.59	-	-	-	T	48760064	C	T	48760064	3	4	289	1	0	0	0	0	1	0	0	0	12494	535	19	1	651	1	PQBP1	23	48760064	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	11059760	48760064	106510496	80	32961										
PHF8	0	genome.wustl.edu	37	chrX	54014274	54014274	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ctcatcatctgaatccaagtCaaattcgtcttccatcacct	3	14	6	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	54014274	54014274	C	G	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1942	p.D648H	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	101	0	0	18	31	63.27	-	-	-	G	54014274	C	G	54014274	3	3	289	1	0	0	0	0	1	0	0	0	11914	826	29	2	1442	2	PHF8	23	54014274	Missense_Mutation	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	5254210	54014274	101256286	81	32962										
NAP1L2	0	genome.wustl.edu	37	chrX	72433777	72433777	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ccctcctcattaccatacatCtcttcatgacacatttcctc	1	17	3	1			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	72433777	72433777	C	T	SNP	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	silent	c.552	p.E184	0.100	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	352	0	0	80	145	64.44	-	-	-	T	72433777	C	T	72433777	2	4	289	1	0	0	0	0	0	0	0	1	10229	912	32	2		2	NAP1L2	23	72433777	Silent	SNP	C	TCGA-AN-A0FJ-01A-11W-A019-09	18419503	72433777	82836783	82	32963										
GPR112	0	genome.wustl.edu	37	chrX	135429691	135429691	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.275	22	6.49820099628204e-05	2.68799734748011	3.32799671592775	2.25444938820912	1	1	14	ctagaactatggaggtgacaGaaatgtccccatcaaagaat	9	8	1	4			TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b988737-0504-42bb-8c75-d70d7a312e68	02ed13b6-5cc2-423d-9b5a-b1c802c33569	X	135429691	135429691	G	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3826	p.E1276K	0.024	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	886	0	0	223	331	59.53	-	-	-	A	135429691	G	A	135429691	3	1	289	1	0	0	0	0	1	0	0	0	6679	943	33	2	3836	2	GPR112	23	135429691	Missense_Mutation	SNP	G	TCGA-AN-A0FJ-01A-11W-A019-09	62995914	135429691	19840869	83	32964										
GPATCH3	0	genome.wustl.edu	37	chr1	27219895	27219895	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	agtacctctgtcatagtacaCactcatgtccacatcccagt	5	14	3	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	27219895	27219895	C	A	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.1096	p.V366L	0.867	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	124	0	0	44	16	26.67	-	-	-	A	27219895	C	A	27219895	3	1	290	1	0	0	0	0	1	0	0	0	6642	478	17	4	497	4	GPATCH3	1	27219895	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		27219895	222030726	1	32965										
MRPL24	0	genome.wustl.edu	37	chr1	156708153	156708153	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	actgtgttcagccctcccacGaccacccagtttcgctgccg	8	18	1	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	156708153	156708153	G	A	SNP	MRPL24	ENST00000361531	human	ensembl	69_37n	-1	known	silent	c.261	p.V87	0.013	pfam_KOW,superfamily_Translation_prot_SH3-like,tigrfam_Ribosomal_L24	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314	227	0	0	234	79	25.16	-	-	-	A	156708153	G	A	156708153	2	1	290	1	0	0	0	0	0	0	0	1	9862	1045	37	1		1	MRPL24	1	156708153	Silent	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	129488258	156708153	92542468	2	32966										
OTOF	0	genome.wustl.edu	37	chr2	26706481	26706481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	catagaaccgggcccactggCgttcggggggcaccccctcg	14	16	0	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	26706481	26706481	C	T	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.1241	p.R414H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	26	0	0	14	6	30	-	-	-	T	26706481	C	T	26706481	3	4	290	1	0	0	0	0	1	0	0	0	11376	768	27	1	5217	1	OTOF	2	26706481	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		26706481	216492892	3	32967										
CIAO1	0	genome.wustl.edu	37	chr2	96933656	96933657	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	atgtggtttggcacccaagtINScaggaggtaagagtcaagca							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	96933656	96933657	-	G	INS	CIAO1	ENST00000488633	human	ensembl	69_37n	1	known	frame_shift_ins	c.483_484	p.Q161fs	0.535:0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	31	0	0	21	12	36.36	-	-	-	G	96933657	-	G	96933656	7	5	290	1	0	1	1	0	0	0	0	0	3447	1664	58	0	497	0	CIAO1	2	96933656	Frame_Shift_Ins	INS	-	TCGA-AN-A0FK-01A-11W-A050-09	70227175	96933656	146265717	4	32968	266	2								
CIAO1	0	genome.wustl.edu	37	chr2	96933659	96933660	+	Frame_Shift_Ins	INS	-	-	CC													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tggtttggcacccaagtcagINSgaggtaagagtcaagcaggg							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	96933659	96933660	-	CC	INS	CIAO1	ENST00000488633	human	ensembl	69_37n	1	known	frame_shift_ins	c.486_487	p.E162fs	0.999:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	29	0	0	20	12	37.5	-	-	-	CC	96933660	-	CC	96933659	7	5	290	1	0	1	1	0	0	0	0	0	3447	991	35	0	500	0	CIAO1	2	96933659	Frame_Shift_Ins	INS	-	TCGA-AN-A0FK-01A-11W-A050-09	3	96933659	146265714	5	32969	266	2								
PAX8	0	genome.wustl.edu	37	chr2	113993061	113993061	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gaccccggagccgacttgctGcagatccaaaaaggcggagc	13	13	0	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	113993061	113993061	G	A	SNP	PAX8	ENST00000429538	human	ensembl	69_37n	-1	known	nonsense	c.997	p.Q333*	1.000	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618	51	0	0	27	12	30.77	-	-	-	A	113993061	G	A	113993061	4	1	290	1	0	0	0	0	0	1	0	0	11558	1329	46	4	371	4	PAX8	2	113993061	Nonsense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	17059402	113993061	129206312	6	32970										
MYO7B	0	genome.wustl.edu	37	chr2	128382968	128382968	+	Frame_Shift_Del	DEL	C	C	-													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	agagctggttgagctgctggCccggcactgctacgtgcagc							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	128382968	128382968	C	-	DEL	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	frame_shift_del	c.3995	p.R1333fs	1.000	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	10	0	0	4	2	33.33	-	-	-	-	128382968	C	-	128382968	7	5	290	1	0	1	0	1	0	0	0	0	10155	739	26	0	4109	0	MYO7B	2	128382968	Frame_Shift_Del	DEL	C	TCGA-AN-A0FK-01A-11W-A050-09	14389907	128382968	114816405	7	32971										
SCN7A	0	genome.wustl.edu	37	chr2	167298248	167298248	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gttggccaatactttcccaaCttgaaaattcttaactaata	4	9	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	167298248	167298248	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.1815	p.K605N	0.954	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	161	0	0	76	44	36.67	-	-	-	A	167298248	C	A	167298248	3	1	290	1	0	0	0	0	1	0	0	0	14011	564	20	4	3281	4	SCN7A	2	167298248	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	38915280	167298248	75901125	8	32972										
TRIP12	0	genome.wustl.edu	37	chr2	230678717	230678717	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ggcatttatgctgaagaattCtaggtacagcaagcagtctg	11	7	2	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	230678717	230678717	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	87	0	0	36	21	36.84	-	-	-	T	230678717	C	T	230678717	3	4	290	1	0	0	0	0	1	0	0	0	16652	922	32	2	4387	2	TRIP12	2	230678717	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	63380469	230678717	12520656	9	32973										
QARS	0	genome.wustl.edu	37	chr3	49135886	49135886	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tgcccgtctgcaggtcacctCcagactctctacacaaccac	6	18	3	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	49135886	49135886	C	G	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662Q	1.000	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	54	0	0	51	9	15	-	-	-	G	49135886	C	G	49135886	3	3	290	1	0	0	0	0	1	0	0	0	12954	864	30	2	359	2	QARS	3	49135886	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		49135886	148886544	10	32974										
RAD54L2	0	genome.wustl.edu	37	chr3	51664777	51664777	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tgcacattgtggacagcagtGaatctgtcagtgaagatgat	12	6	2	4			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	51664777	51664777	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	1	known	missense	c.655	p.E219K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	134	0	0	155	40	20.51	-	-	-	A	51664777	G	A	51664777	3	1	290	1	0	0	0	0	1	0	0	0	13077	1291	45	2	673	2	RAD54L2	3	51664777	Missense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	2528891	51664777	146357653	11	32975										
DPPA2	0	genome.wustl.edu	37	chr3	109031471	109031471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tccatttgttccatatttgcGtcatctttaactggcaccag	6	11	2	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	109031471	109031471	G	A	SNP	DPPA2	ENST00000478945	human	ensembl	69_37n	-1	known	silent	c.102	p.D34	0.001	NULL	pfscan_SAP_DNA-bd	-	no_errors	DPPA2	HGNC	ENSG00000163530	240	0	0	107	81	43.09	-	-	-	A	109031471	G	A	109031471	2	1	290	1	0	0	0	0	0	0	0	1	4769	1136	40	1		1	DPPA2	3	109031471	Silent	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	57366694	109031471	88990959	12	32976										
KALRN	0	genome.wustl.edu	37	chr3	124380761	124380761	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	acatgatgaatctaggacgtCtgcagggctttgaggtgagt	14	6	2	4			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	124380761	124380761	C	T	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	silent	c.6328	p.L2110	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	136	0	0	105	13	11.02	-	-	-	T	124380761	C	T	124380761	2	4	290	1	0	0	0	0	0	0	0	1	8029	912	32	2		2	KALRN	3	124380761	Silent	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	15349290	124380761	73641669	13	32977										
WDR19	0	genome.wustl.edu	37	chr4	39247000	39247000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	cctttccagggcaaaagttgGtgatcttctgccccacgttt	9	12	2	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	39247000	39247000	G	T	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	missense	c.2657	p.G886V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	175	0	0	65	24	26.97	-	-	-	T	39247000	G	T	39247000	3	4	290	1	0	0	0	0	1	0	0	0	17376	1261	44	4	2751	4	WDR19	4	39247000	Missense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09		39247000	151907276	14	32978										
DCLK2	0	genome.wustl.edu	37	chr4	151153908	151153908	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ggcagtgccatggtgtacaaCttagccaatgccctcaggta	11	11	1	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	151153908	151153908	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	silent	c.1545	p.N515	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	124	0	0	87	39	30.95	-	-	-	T	151153908	C	T	151153908	2	4	290	1	0	0	0	0	0	0	0	1	4323	564	20	4		4	DCLK2	4	151153908	Silent	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	111906908	151153908	40000368	15	32979										
KCTD16	0	genome.wustl.edu	37	chr5	143853657	143853657	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	atccttggcaatctgaacttTtaaggaagtatcatctataa	6	7	3	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	5	143853657	143853657	T	C	SNP	KCTD16	ENST00000507359	human	ensembl	69_37n	1	known	silent	c.1267	p.L423	0.927	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775	27	0	0	30	15	33.33	-	-	-	C	143853657	T	C	143853657	2	2	290	1	0	0	0	0	0	0	0	1	8157	1838	64	5		5	KCTD16	5	143853657	Silent	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09		143853657	37061603	16	32980										
BPHL	0	genome.wustl.edu	37	chr6	3140669	3140669	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gtccagtgccccgccttgatTgtgcacggtgagaaggatcc	13	12	0	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	3140669	3140669	T	A	SNP	BPHL	ENST00000423798	human	ensembl	69_37n	1	putative	nonsense	c.11	p.L4*	0.793	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BPHL	HGNC	ENSG00000137274	53	0	0	47	24	33.8	-	-	-	A	3140669	T	A	3140669	4	1	290	1	0	0	0	0	0	1	0	0	1497	1800	63	5	736	5	BPHL	6	3140669	Nonsense_Mutation	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09		3140669	167974398	17	32981										
TBP	0	genome.wustl.edu	37	chr6	170871216	170871216	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	acagactctcacaactgcacCcttgccgggcaccactccac	6	19	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	170871216	170871216	C	G	SNP	TBP	ENST00000230354	human	ensembl	69_37n	1	known	missense	c.392	p.P131R	1.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	281	0	0	147	92	38.49	-	-	-	G	170871216	C	G	170871216	3	3	290	1	0	0	0	0	1	0	0	0	15739	623	22	4	398	4	TBP	6	170871216	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	167730547	170871216	243851	18	32982										
MEOX2	0	genome.wustl.edu	37	chr7	15666489	15666489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gctctttggtaaatgctgtcCtttctttcctgggtttgctg	10	9	2	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	15666489	15666489	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	69_37n	-1	known	missense	c.572	p.R191K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	365	0	0	166	163	49.54	-	-	-	T	15666489	C	T	15666489	3	4	290	1	0	0	0	0	1	0	0	0	9545	681	24	4	350	4	MEOX2	7	15666489	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		15666489	143472174	19	32983										
HOXA1	0	genome.wustl.edu	37	chr7	27134949	27134949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tggagaagatgtctccgatgCgggggagcgacaggcttctt	16	8	2	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	27134949	27134949	C	T	SNP	HOXA1	ENST00000343060	human	ensembl	69_37n	-1	known	missense	c.583	p.A195T	0.610	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA1	HGNC	ENSG00000105991	94	0	0	76	24	24	-	-	-	T	27134949	C	T	27134949	3	4	290	1	0	0	0	0	1	0	0	0	7339	768	27	1	432	1	HOXA1	7	27134949	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	11468460	27134949	132003714	20	32984										
TES	0	genome.wustl.edu	37	chr7	115892485	115892485	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gagatatacgtgatggtcaaTgacaagcccgtgtgcaagcc	12	9	1	3			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	115892485	115892485	T	C	SNP	TES	ENST00000393484	human	ensembl	69_37n	1	putative	missense	c.392	p.M131T	0.974	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TES	HGNC	ENSG00000135269	162	0	0	73	63	46.32	-	-	-	C	115892485	T	C	115892485	3	2	290	1	0	0	0	0	1	0	0	0	15860	1461	51	5	1054	5	TES	7	115892485	Missense_Mutation	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09	88757536	115892485	43246178	21	32985										
DLGAP2	0	genome.wustl.edu	37	chr8	1497608	1497608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ggcccactgctaccccgacgCgctgcagagccccttcgggg	13	18	0	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	8	1497608	1497608	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	1	known	missense	c.749	p.A250V	0.006	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	40	0	0	34	12	26.09	-	-	-	T	1497608	C	T	1497608	3	4	290	1	0	0	0	0	1	0	0	0	4596	768	27	1	751	1	DLGAP2	8	1497608	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		1497608	144866414	22	32986										
SLC28A3	0	genome.wustl.edu	37	chr9	86894959	86894959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tctcactgcccccgaggcgaTatcacgctttctggaaggag	11	13	3	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	9	86894959	86894959	T	C	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.1759	p.I587V	1.000	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	112	0	0	59	82	58.16	-	-	-	C	86894959	T	C	86894959	3	2	290	1	0	0	0	0	1	0	0	0	14622	1406	49	5	328	5	SLC28A3	9	86894959	Missense_Mutation	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09		86894959	54318472	23	32987										
GPR162	0	genome.wustl.edu	37	chr12	6934684	6934685	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ccctcaagtcggactcggcgINScccccctggatggtgctggc							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	12	6934684	6934685	-	C	INS	GPR162	ENST00000311268	human	ensembl	69_37n	1	known	frame_shift_ins	c.903_904	p.W303fs	0.313:0.996	pfam_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_162,prints_GPCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510	32	0	0	20	3	13.04	-	-	-	C	6934685	-	C	6934684	7	5	290	1	0	1	1	0	0	0	0	0	6716	1074	38	0	928	0	GPR162	12	6934684	Frame_Shift_Ins	INS	-	TCGA-AN-A0FK-01A-11W-A050-09		6934684	126917211	24	32988										
AACS	0	genome.wustl.edu	37	chr12	125603260	125603261	+	Frame_Shift_Del	DEL	CC	CC	-													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	catggtcttgtacgatggctCccccctggtgcccacgccca							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	12	125603260	125603261	CC	-	DEL	AACS	ENST00000316519	human	ensembl	69_37n	1	known	frame_shift_del	c.1070_1071	p.L359fs	1.000:0.999	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	73	0	0	18	2	10	-	-	-	-	125603261	CC	-	125603260	7	5	290	1	0	1	0	1	0	0	0	0	9	855	30	0	1108	0	AACS	12	125603260	Frame_Shift_Del	DEL	CC	TCGA-AN-A0FK-01A-11W-A050-09	118668576	125603260	8248635	25	32989										
DUOX2	0	genome.wustl.edu	37	chr15	45396252	45396252	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ggacttatcctctggggagcCtgggaagaaaaaagggaatg	15	6	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	15	45396252	45396252	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	splice_site	c.2561-1	e19-1	1.000	-	-	-	no_errors	DUOX2	HGNC	ENSG00000140279	116	1	0.85	79	24	23.3	-	-	-	T	45396252	C	T	45396252	5	4	290	1	0	0	0	0	0	0	1	0	4836	695	24	4	2146	4	DUOX2	15	45396252	Splice_Site	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		45396252	57135140	26	32990										
DOC2A	0	genome.wustl.edu	37	chr16	30018123	30018123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	cacgtcttgacgtaggggtcCgagtaaccgttgacgtccat	12	11	1	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	16	30018123	30018123	C	T	SNP	DOC2A	ENST00000564357	human	ensembl	69_37n	-1	novel	missense	c.370	p.G124R	0.008	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOC2A	HGNC	ENSG00000149927	89	0	0	53	32	37.65	-	-	-	T	30018123	C	T	30018123	3	4	290	1	0	0	0	0	1	0	0	0	4718	639	23	1	357	1	DOC2A	16	30018123	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09		30018123	60336630	27	32991										
CORO6	0	genome.wustl.edu	37	chr17	27948434	27948434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ctttgccgaaccacacgtctGctcatagctgcaggcagaga	10	13	2	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	17	27948434	27948434	G	A	SNP	CORO6	ENST00000345068	human	ensembl	69_37n	-1	known	silent	c.6	p.S2	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549	55	0	0	18	8	30.77	-	-	-	A	27948434	G	A	27948434	2	1	290	1	0	0	0	0	0	0	0	1	3788	1310	46	4		4	CORO6	17	27948434	Silent	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09		27948434	53246776	28	32992										
NOTUM	0	genome.wustl.edu	37	chr17	79914941	79914942	+	Frame_Shift_Ins	INS	-	-	C													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	cattcaggagcaccccggtgINSccccccgcgctgcaaggagg							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	17	79914941	79914942	-	C	INS	NOTUM	ENST00000409678	human	ensembl	69_37n	-1	known	frame_shift_ins	c.705_704	p.T236fs	1.000:1.000	pfam_Pec_acetylest	pfam_Pec_acetylest	-	no_errors	NOTUM	HGNC	ENSG00000185269	15	0	0	10	3	23.08	-	-	-	C	79914942	-	C	79914941	7	5	290	1	0	1	1	0	0	0	0	0	10624	1306	46	0	805	0	NOTUM	17	79914941	Frame_Shift_Ins	INS	-	TCGA-AN-A0FK-01A-11W-A050-09	51966507	79914941	1280269	29	32993										
GIPC3	0	genome.wustl.edu	37	chr19	3589526	3589527	+	Frame_Shift_Ins	INS	-	-	G													0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	agaccctgcggcttcgttctINSgggggggctgccacagtgga							TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	3589526	3589527	-	G	INS	GIPC3	ENST00000322315	human	ensembl	69_37n	1	known	frame_shift_ins	c.678_679	p.A228fs	0.411:0.803	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855	45	0	0	44	5	10.2	-	-	-	G	3589527	-	G	3589526	7	5	290	1	0	1	1	0	0	0	0	0	6446	1567	55	0	692	0	GIPC3	19	3589526	Frame_Shift_Ins	INS	-	TCGA-AN-A0FK-01A-11W-A050-09		3589526	55539457	30	32994										
CREB3L3	0	genome.wustl.edu	37	chr19	4171690	4171690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	cacaacgatgctgcctcccgCgtggctgctgatgctgtgcc	12	15	0	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	4171690	4171690	C	T	SNP	CREB3L3	ENST00000252587	human	ensembl	69_37n	1	known	missense	c.776	p.A259V	0.427	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd	-	no_errors	CREB3L3	HGNC	ENSG00000060566	19	0	0	22	7	24.14	-	-	-	T	4171690	C	T	4171690	3	4	290	1	0	0	0	0	1	0	0	0	3888	755	27	1	1148	1	CREB3L3	19	4171690	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	582164	4171690	54957293	31	32995										
ELAVL1	0	genome.wustl.edu	37	chr19	8032461	8032461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	cgacccacctgaatctctgcGcctggtggtgaacggggcct	13	14	1	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	8032461	8032461	G	A	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	missense	c.725	p.A242V	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	41	0	0	31	34	51.52	-	-	-	A	8032461	G	A	8032461	3	1	290	1	0	0	0	0	1	0	0	0	5086	1087	38	1	344	1	ELAVL1	19	8032461	Missense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	3860771	8032461	51096522	32	32996										
MUC16	0	genome.wustl.edu	37	chr19	9061379	9061379	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tctgggaaggcaggagttgaTgtggaaacacttgtattccc	13	7	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	9061379	9061379	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.26067	p.T8689	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	196	0	0	256	150	36.95	-	-	-	C	9061379	T	C	9061379	2	2	290	1	0	0	0	0	0	0	0	1	10045	1451	51	5		5	MUC16	19	9061379	Silent	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09	1028918	9061379	50067604	33	32997										
DNASE2	0	genome.wustl.edu	37	chr19	12991929	12991929	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ccctctctgcgccgcctcccCggaccctctaagagctggca	9	20	2	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	12991929	12991929	C	G	SNP	DNASE2	ENST00000222219	human	ensembl	69_37n	-1	known	missense	c.124	p.G42R	0.014	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612	62	0	0	24	24	50	-	-	-	G	12991929	C	G	12991929	3	3	290	1	0	0	0	0	1	0	0	0	4699	652	23	3	978	3	DNASE2	19	12991929	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	3930550	12991929	46137054	34	32998										
TRMT1	0	genome.wustl.edu	37	chr19	13218608	13218608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gggcagaggcaggggcatccGtcttcacagcgttcttacag	14	11	3	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	13218608	13218608	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.1463	p.T488M	0.998	pfam_tRNA_MeTrfase_TRM1,tigrfam_tRNA_MeTrfase_TRM1	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	94	0	0	73	47	39.17	-	-	-	A	13218608	G	A	13218608	3	1	290	1	0	0	0	0	1	0	0	0	16657	1145	40	1	536	1	TRMT1	19	13218608	Missense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	226679	13218608	45910375	35	32999										
BST2	0	genome.wustl.edu	37	chr19	17516273	17516273	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	gaagataatcaagggcacccCcagaatcacgatgatcagga	10	10	3	3			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	17516273	17516273	C	G	SNP	BST2	ENST00000252593	human	ensembl	69_37n	-1	known	missense	c.112	p.G38R	0.000	NULL	superfamily_Prefoldin	-	no_errors	BST2	HGNC	ENSG00000130303	153	0	0	84	45	34.88	-	-	-	G	17516273	C	G	17516273	3	3	290	1	0	0	0	0	1	0	0	0	1542	623	22	4	446	4	BST2	19	17516273	Missense_Mutation	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	4297665	17516273	41612710	36	33000										
NLRP8	0	genome.wustl.edu	37	chr19	56466066	56466066	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	atacagggagctcctgggatCggaaaaacaatcctggccaa	11	10	0	0			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	56466066	56466066	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	silent	c.642	p.I214	0.001	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	82	0	0	52	32	38.1	-	-	-	T	56466066	C	T	56466066	2	4	290	1	0	0	0	0	0	0	0	1	10555	874	31	1		1	NLRP8	19	56466066	Silent	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	38949793	56466066	2662917	37	33001										
PCNT	0	genome.wustl.edu	37	chr21	47819611	47819611	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ttaatgcaggaagaagaaatTaaacgtctggaggagatgaa	12	3	1	4			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	21	47819611	47819611	T	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	silent	c.4692	p.I1564	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	75	0	0	39	10	20.41	-	-	-	C	47819611	T	C	47819611	2	2	290	1	0	0	0	0	0	0	0	1	11663	1742	61	5		5	PCNT	21	47819611	Silent	SNP	T	TCGA-AN-A0FK-01A-11W-A050-09		47819611	310284	38	33002										
TTLL12	0	genome.wustl.edu	37	chr22	43569738	43569738	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	caccttgggggtgctctctcGgtgccggatgatgctgtgca	15	11	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	22	43569738	43569738	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	69_37n	-1	known	nonsense	c.1324	p.R442*	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL12	HGNC	ENSG00000100304	40	0	0	16	7	30.43	-	-	-	A	43569738	G	A	43569738	4	1	290	1	0	0	0	0	0	1	0	0	16822	1124	39	1	634	1	TTLL12	22	43569738	Nonsense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09		43569738	7734828	39	33003										
ARSE	0	genome.wustl.edu	37	chrX	2853148	2853148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tactttttccccaaagcacgGgcagacctttcttccatagc	6	14	1	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	2853148	2853148	G	A	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	missense	c.1570	p.P524S	0.820	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	137	0	0	68	58	46.03	-	-	-	A	2853148	G	A	2853148	3	1	290	1	0	0	0	0	1	0	0	0	994	1232	43	4	278	4	ARSE	23	2853148	Missense_Mutation	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09		2853148	152417412	40	33004										
AKAP4	0	genome.wustl.edu	37	chrX	49957345	49957345	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	tgctcctggcattgttcttcCgctttgtcagatctgttgga	10	10	3	1			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	49957345	49957345	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.2019	p.A673	0.012	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	172	0	0	121	89	42.18	-	-	-	T	49957345	C	T	49957345	2	4	290	1	0	0	0	0	0	0	0	1	453	639	23	1		1	AKAP4	23	49957345	Silent	SNP	C	TCGA-AN-A0FK-01A-11W-A050-09	47104197	49957345	105313215	41	33005										
YIPF6	0	genome.wustl.edu	37	chrX	67718953	67718953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0731707317073171	3	0.911624843351391	0.920722135007849	0	1.08812615955473	0.1	0.5224358974359	0	ggagacccggggacagcatcGcccaggcccctggtgagctt	15	14	0	2			TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	67718953	67718953	G	A	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	1	known	silent	c.45	p.S15	0.030	NULL	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704	201	0	0	223	51	18.61	-	-	-	A	67718953	G	A	67718953	2	1	290	1	0	0	0	0	0	0	0	1	17579	1074	38	1		1	YIPF6	23	67718953	Silent	SNP	G	TCGA-AN-A0FK-01A-11W-A050-09	17761608	67718953	87551607	42	33006										
MATN1	0	genome.wustl.edu	37	chr1	31188155	31188155	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cccacagcaaacatcttaaaGcctgccaggaggaacaggag	10	12	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	31188155	31188155	G	A	SNP	MATN1	ENST00000373765	human	ensembl	69_37n	-1	known	silent	c.1209	p.G403	0.162	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510	72	0	0	6	37	86.05	-	-	-	A	31188155	G	A	31188155	2	1	291	1	0	0	0	0	0	0	0	1	9404	985	34	4		4	MATN1	1	31188155	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		31188155	218062466	1	33007										
ARHGAP29	0	genome.wustl.edu	37	chr1	94654845	94654845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcaggaaggcgtacaacatcCtctaaagagttggcaggtcc	11	10	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	94654845	94654845	C	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.1503	p.E501D	0.957	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	282	1	0.35	82	103	55.68	-	-	-	G	94654845	C	G	94654845	3	3	291	1	0	0	0	0	1	0	0	0	880	680	24	4	2322	4	ARHGAP29	1	94654845	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	63466690	94654845	154595776	2	33008										
FAM102B	0	genome.wustl.edu	37	chr1	109171386	109171386	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gatgacattgtagagaaaatAttacaaagtcaagacttcag	8	5	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	109171386	109171386	A	G	SNP	FAM102B	ENST00000370035	human	ensembl	69_37n	1	known	missense	c.930	p.I310M	1.000	NULL	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636	80	0	0	51	32	38.55	-	-	-	G	109171386	A	G	109171386	3	3	291	1	0	0	0	0	1	0	0	0	5423	439	16	5	964	5	FAM102B	1	109171386	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	14516541	109171386	140079235	3	33009										
MAGI3	0	genome.wustl.edu	37	chr1	114225698	114225698	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taaaggacattgtgcctgaaAagaaaagcactttaaatgaa	8	5	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	114225698	114225698	A	C	SNP	MAGI3	ENST00000307546	human	ensembl	69_37n	1	novel	missense	c.3508	p.K1170Q	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	74	0	0	42	45	51.72	-	-	-	C	114225698	A	C	114225698	3	2	291	1	0	0	0	0	1	0	0	0	9263	15	1	5	3644	5	MAGI3	1	114225698	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	5054312	114225698	135024923	4	33010										
ITGA10	0	genome.wustl.edu	37	chr1	145535834	145535834	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cggcgaggccaagaggcagtCtgtctgactgcagccctttg	14	12	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	145535834	145535834	C	G	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	silent	c.2022	p.V674	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	133	0	0	68	25	26.88	-	-	-	G	145535834	C	G	145535834	2	3	291	1	0	0	0	0	0	0	0	1	7927	900	32	2		2	ITGA10	1	145535834	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	31310136	145535834	103714787	5	33011										
FCRL5	0	genome.wustl.edu	37	chr1	157514745	157514745	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tggaagtcagttcttttattAaggaatgccaggacattatc	9	6	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	157514745	157514745	A	C	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	silent	c.435	p.L145	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	91	0	0	89	33	27.05	-	-	-	C	157514745	A	C	157514745	2	2	291	1	0	0	0	0	0	0	0	1	5844	349	13	5		5	FCRL5	1	157514745	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	11978911	157514745	91735876	6	33012										
OR6K2	0	genome.wustl.edu	37	chr1	158669708	158669708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aagagcgaaaagacaatgaaGtgagagacacacgtggaaaa	12	5	0	5			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	158669708	158669708	G	T	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	missense	c.735	p.H245Q	0.998	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	339	0	0	271	142	34.3	-	-	-	T	158669708	G	T	158669708	3	4	291	1	0	0	0	0	1	0	0	0	11275	1020	36	4	243	4	OR6K2	1	158669708	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	1154963	158669708	90580913	7	33013										
ASTN1	0	genome.wustl.edu	37	chr1	177001903	177001903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcttctggggctgcgggaccCggcggcgtttgcaccagcgc	16	14	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	177001903	177001903	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.554	p.R185Q	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	35	0	0	27	22	44.9	-	-	-	T	177001903	C	T	177001903	3	4	291	1	0	0	0	0	1	0	0	0	1068	652	23	1	3418	1	ASTN1	1	177001903	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	18332195	177001903	72248718	8	33014										
LMOD1	0	genome.wustl.edu	37	chr1	201869213	201869213	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gctgggagctgcctcctcctCcaccttggccggtccttcag	11	17	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	201869213	201869213	C	G	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	missense	c.928	p.E310Q	0.998	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	173	1	0.57	252	92	26.74	-	-	-	G	201869213	C	G	201869213	3	3	291	1	0	0	0	0	1	0	0	0	8912	864	30	2	882	2	LMOD1	1	201869213	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	24867310	201869213	47381408	9	33015										
C1orf74	0	genome.wustl.edu	37	chr1	209956185	209956185	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taaagtcagagggccacagcCggcagtgtgactatctcaga	12	10	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	209956185	209956185	C	G	SNP	C1orf74	ENST00000294811	human	ensembl	69_37n	-1	known	silent	c.795	p.P265	0.000	NULL	NULL	-	no_errors	C1orf74	HGNC	ENSG00000162757	156	0	0	82	49	37.4	-	-	-	G	209956185	C	G	209956185	2	3	291	1	0	0	0	0	0	0	0	1	2078	639	23	3		3	C1orf74	1	209956185	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	8086972	209956185	39294436	10	33016										
INTS7	0	genome.wustl.edu	37	chr1	212126020	212126020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cactatcagcatgggctgttCcagtagatccatattcctgg	9	11	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	212126020	212126020	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.2207	p.G736E	0.997	NULL	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	74	0	0	86	59	40.41	-	-	-	T	212126020	C	T	212126020	3	4	291	1	0	0	0	0	1	0	0	0	7837	855	30	2	697	2	INTS7	1	212126020	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	2169835	212126020	37124601	11	33017										
PROX1	0	genome.wustl.edu	37	chr1	214171443	214171443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agacttaactagggataccaCgagtctgaggaccaagatgt	11	8	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	214171443	214171443	C	T	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.1565	p.T522M	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	168	1	0.59	141	54	27.69	-	-	-	T	214171443	C	T	214171443	3	4	291	1	0	0	0	0	1	0	0	0	12641	536	19	1	1567	1	PROX1	1	214171443	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	2045423	214171443	35079178	12	33018										
DISP1	0	genome.wustl.edu	37	chr1	223178036	223178036	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcaggggccatgatgatgccCtccacagttctagcttacac	10	13	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	223178036	223178036	C	G	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	silent	c.3297	p.P1099	0.993	pfam_Patched,pfam_MMPL-typ	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	48	0	0	44	25	36.23	-	-	-	G	223178036	C	G	223178036	2	3	291	1	0	0	0	0	0	0	0	1	4575	668	24	4		4	DISP1	1	223178036	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	9006593	223178036	26072585	13	33019										
SIPA1L2	0	genome.wustl.edu	37	chr1	232561450	232561450	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcctggtcaagcacggaactCcgggaactgccaaaggagga	14	11	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	232561450	232561450	C	G	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	silent	c.4515	p.R1505	0.040	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	176	1	0.56	166	70	29.66	-	-	-	G	232561450	C	G	232561450	2	3	291	1	0	0	0	0	0	0	0	1	14419	842	30	2		2	SIPA1L2	1	232561450	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	9383414	232561450	16689171	14	33020										
OR11L1	0	genome.wustl.edu	37	chr1	248005072	248005072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	caccacggtgatgatgacaaCattccctataatggtcaggc	9	11	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	1	248005072	248005072	C	A	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.127	p.V43F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	113	0	0	132	45	25.42	-	-	-	A	248005072	C	A	248005072	3	1	291	1	0	0	0	0	1	0	0	0	11003	478	17	4	845	4	OR11L1	1	248005072	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	15443622	248005072	1245549	15	33021										
ID2	0	genome.wustl.edu	37	chr2	8822605	8822605	+	Frame_Shift_Del	DEL	A	A	-													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aggcgtccaggacgccgctgAccaccctcaacacggatatc							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	8822605	8822605	A	-	DEL	ID2	ENST00000234091	human	ensembl	69_37n	1	known	frame_shift_del	c.310	p.T104fs	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ID2	HGNC	ENSG00000115738	34	0	0	9	10	52.63	-	-	-	-	8822605	A	-	8822605	7	5	291	1	0	1	0	1	0	0	0	0	7544	275	10	0	312	0	ID2	2	8822605	Frame_Shift_Del	DEL	A	TCGA-AN-A0FL-01A-11W-A050-09		8822605	234376768	16	33022										
ROCK2	0	genome.wustl.edu	37	chr2	11334430	11334430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	attgttctttatcttgttcaCtgtcatagaaaagaatcttc	5	7	5	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	11334430	11334430	C	T	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.3560	p.S1187N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	128	0	0	21	59	73.75	-	-	-	T	11334430	C	T	11334430	3	4	291	1	0	0	0	0	1	0	0	0	13604	565	20	4	626	4	ROCK2	2	11334430	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	2511825	11334430	231864943	17	33023										
FAM49A	0	genome.wustl.edu	37	chr2	16742265	16742265	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgatttaacttacggagtttCcagcatgactttacagacac	7	9	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	16742265	16742265	C	A	SNP	FAM49A	ENST00000355549	human	ensembl	69_37n	-1	known	nonsense	c.703	p.E235*	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872	191	0	0	14	82	85.42	-	-	-	A	16742265	C	A	16742265	4	1	291	1	0	0	0	0	0	1	0	0	5621	864	30	2	284	2	FAM49A	2	16742265	Nonsense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	5407835	16742265	226457108	18	33024										
AFF3	0	genome.wustl.edu	37	chr2	100210682	100210682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttcattttggatcagaatagGaggcttgtggggattaactt	12	4	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	100210682	100210682	G	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.1516	p.P506T	0.317	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	44	0	0	14	15	51.72	-	-	-	T	100210682	G	T	100210682	3	4	291	1	0	0	0	0	1	0	0	0	358	1174	41	2	2283	2	AFF3	2	100210682	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	83468417	100210682	142988691	19	33025										
KIF5C	0	genome.wustl.edu	37	chr2	149868090	149868090	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttggttggatacagccaagcCcatccgccccggacactacc	9	16	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	149868090	149868090	C	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.2774	p.P925H	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	80	0	0	60	30	33.33	-	-	-	A	149868090	C	A	149868090	3	1	291	1	0	0	0	0	1	0	0	0	8359	623	22	4	2794	4	KIF5C	2	149868090	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	49657408	149868090	93331283	20	33026										
SCN9A	0	genome.wustl.edu	37	chr2	167060936	167060936	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttcattgcattatagtatttCttctgttcttctgtcataaa	4	7	6	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	167060936	167060936	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.4440	p.K1480	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	209	0	0	188	91	32.62	-	-	-	T	167060936	C	T	167060936	2	4	291	1	0	0	0	0	0	0	0	1	14013	912	32	2		2	SCN9A	2	167060936	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	17192846	167060936	76138437	21	33027										
TTN	0	genome.wustl.edu	37	chr2	179400248	179400248	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaatctcgtgagacatcactAactttgactcctctgggtgg	10	10	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	179400248	179400248	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.93390	p.V31130	0.886	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	98	0	0	27	67	71.28	-	-	-	G	179400248	A	G	179400248	2	3	291	1	0	0	0	0	0	0	0	1	16832	349	13	5		5	TTN	2	179400248	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	12339312	179400248	63799125	22	33028										
TTN	0	genome.wustl.edu	37	chr2	179499339	179499339	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gacatccttcaggggcacagCaaagtcaagttcgatttctg	10	10	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	179499339	179499339	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34465	p.A11489S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	39	0	0	17	10	37.04	-	-	-	A	179499339	C	A	179499339	3	1	291	1	0	0	0	0	1	0	0	0	16832	710	25	4	66056	4	TTN	2	179499339	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	99091	179499339	63700034	23	33029										
TTN	0	genome.wustl.edu	37	chr2	179647781	179647781	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	caccttctatgacagtcacaTtttttaagccctgaagagag	7	10	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	179647781	179647781	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.2852	p.N951I	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	26	0	0	25	9	26.47	-	-	-	A	179647781	T	A	179647781	3	1	291	1	0	0	0	0	1	0	0	0	16832	1493	52	5	108516	5	TTN	2	179647781	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	148442	179647781	63551592	24	33030										
COL5A2	0	genome.wustl.edu	37	chr2	189904261	189904261	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggccagggggacccggagggCcaggtgggccaggctcacca	19	13	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	189904261	189904261	C	A	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.3662	p.G1221V	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	40	0	0	26	10	27.78	-	-	-	A	189904261	C	A	189904261	3	1	291	1	0	0	0	0	1	0	0	0	3727	739	26	4	853	4	COL5A2	2	189904261	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	10256480	189904261	53295112	25	33031										
DNAH7	0	genome.wustl.edu	37	chr2	196709889	196709889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtccactctttagtttgatTctttagaacatccacagaaa	5	9	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	196709889	196709889	T	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.8782	p.N2928Y	0.581	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	157	0	0	147	27	15.52	-	-	-	A	196709889	T	A	196709889	3	1	291	1	0	0	0	0	1	0	0	0	4641	1797	62	5	3368	5	DNAH7	2	196709889	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	6805628	196709889	46489484	26	33032										
ALS2CR8	0	genome.wustl.edu	37	chr2	203826061	203826061	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cagagtgtttgggggacccgTcagtctccaagcccagccaa	12	13	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	203826061	203826061	T	A	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	silent	c.744	p.R248	1.000	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	184	0	0	114	45	28.3	-	-	-	A	203826061	T	A	203826061	2	1	291	1	0	0	0	0	0	0	0	1	555	1654	58	5		5	ALS2CR8	2	203826061	Silent	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	7116172	203826061	39373312	27	33033										
CUL3	0	genome.wustl.edu	37	chr2	225346622	225346622	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cagatacctgtttgaatcttGactctgtgtagtttggatgt	10	6	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	225346622	225346622	G	C	SNP	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	silent	c.2016	p.V672	1.000	superfamily_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	105	0	0	56	52	48.15	-	-	-	C	225346622	G	C	225346622	2	2	291	1	0	0	0	0	0	0	0	1	4087	1277	45	2		2	CUL3	2	225346622	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	21520561	225346622	17852751	28	33034										
UGT1A3	0	genome.wustl.edu	37	chr2	234638190	234638190	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ataatgaggccctgatcaggCacctgaatgctacttccttt	8	11	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	2	234638190	234638190	C	A	SNP	UGT1A3	ENST00000482026	human	ensembl	69_37n	1	known	missense	c.418	p.H140N	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	313	0	0	16	263	94.27	-	-	-	A	234638190	C	A	234638190	3	1	291	1	0	0	0	0	1	0	0	0	17043	710	25	4	420	4	UGT1A3	2	234638190	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	9291568	234638190	8561183	29	33035										
OGG1	0	genome.wustl.edu	37	chr3	9798825	9798825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agaaagggttccaaagggccGgaaggctagatggggcaccc	16	9	0	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	9798825	9798825	G	A	SNP	OGG1	ENST00000302003	human	ensembl	69_37n	1	known	missense	c.1046	p.R349Q	0.000	NULL	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026	160	0	0	13	189	93.56	-	-	-	A	9798825	G	A	9798825	3	1	291	1	0	0	0	0	1	0	0	0	10918	1116	39	1	1099	1	OGG1	3	9798825	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		9798825	188223605	30	33036										
COLQ	0	genome.wustl.edu	37	chr3	15495408	15495408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctccacaccctcatgccggTgaccatctccacagtaggca	7	18	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	15495408	15495408	T	G	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	missense	c.1226	p.H409P	1.000	NULL	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	307	0	0	155	52	24.88	-	-	-	G	15495408	T	G	15495408	3	3	291	1	0	0	0	0	1	0	0	0	3743	1696	59	5	149	5	COLQ	3	15495408	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	5696583	15495408	182527022	31	33037										
TTC21A	0	genome.wustl.edu	37	chr3	39167781	39167781	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccaggccagatcgtgtctccActtcttaaacaagtcgccgt	8	14	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	39167781	39167781	A	G	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	silent	c.1446	p.P482	0.849	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	186	1	0.53	14	76	84.44	-	-	-	G	39167781	A	G	39167781	2	3	291	1	0	0	0	0	0	0	0	1	16784	146	6	5		5	TTC21A	3	39167781	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	23672373	39167781	158854649	32	33038										
ZNF167	0	genome.wustl.edu	37	chr3	44607075	44607075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ctacctcacccctcagtgggGgctcagcccctggagcccac	10	19	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	44607075	44607075	G	T	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.520	p.G174C	0.151	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	183	0	0	7	60	89.55	-	-	-	T	44607075	G	T	44607075	3	4	291	1	0	0	0	0	1	0	0	0	17837	1232	43	4	526	4	ZNF167	3	44607075	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	5439294	44607075	153415355	33	33039										
FAM116A	0	genome.wustl.edu	37	chr3	57619004	57619004	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taacttactaatggaatgatGaaactttgtgtcagttccaa	7	6	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	57619004	57619004	G	C	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1341	p.F447L	1.000	pfam_Afi1_N	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	86	0	0	1	27	96.43	-	-	-	C	57619004	G	C	57619004	3	2	291	1	0	0	0	0	1	0	0	0	5447	1281	45	2	509	2	FAM116A	3	57619004	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	13011929	57619004	140403426	34	33040										
ATG3	0	genome.wustl.edu	37	chr3	112256689	112256689	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agcatcttcaccgccagcatCagttttggctttacaagctt	7	12	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	112256689	112256689	C	G	SNP	ATG3	ENST00000283290	human	ensembl	69_37n	-1	known	missense	c.559	p.D187H	1.000	NULL	pfam_Autophagy-rel_prot_3_N,pfam_Autophagy-rel_prot_3,pfam_Autophagy-rel_prot_3_C	-	no_errors	ATG3	HGNC	ENSG00000144848	341	0	0	209	97	31.7	-	-	-	G	112256689	C	G	112256689	3	3	291	1	0	0	0	0	1	0	0	0	1099	826	29	2	401	2	ATG3	3	112256689	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	54637685	112256689	85765741	35	33041										
PLXNA1	0	genome.wustl.edu	37	chr3	126707789	126707789	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgacaacgtcaacaagctgcTgctgctggactatgccgcta	10	12	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	126707789	126707789	T	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.353	p.L118Q	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	15	0	0	1	10	90.91	-	-	-	A	126707789	T	A	126707789	3	1	291	1	0	0	0	0	1	0	0	0	12193	1580	55	5	355	5	PLXNA1	3	126707789	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	14451100	126707789	71314641	36	33042										
YEATS2	0	genome.wustl.edu	37	chr3	183479305	183479305	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	acacacacagcaggaggattCtttgtttgcatctatgccac	8	11	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	183479305	183479305	C	G	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.1667	p.S556C	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	125	0	0	86	104	54.74	-	-	-	G	183479305	C	G	183479305	3	3	291	1	0	0	0	0	1	0	0	0	17569	913	32	2	1717	2	YEATS2	3	183479305	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	56771516	183479305	14543125	37	33043										
LSG1	0	genome.wustl.edu	37	chr3	194371715	194371715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gatggcatcaccaagccaggAcagtcacacaggcagaggcc	12	13	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	3	194371715	194371715	A	G	SNP	LSG1	ENST00000437613	human	ensembl	69_37n	-1	novel	missense	c.515	p.V172A	1.000	pfam_GTP_binding_domain,prints_GTP_binding_domain	pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LSG1	HGNC	ENSG00000041802	163	0	0	137	42	23.46	-	-	-	G	194371715	A	G	194371715	3	3	291	1	0	0	0	0	1	0	0	0	9115	273	10	5	682	5	LSG1	3	194371715	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	10892410	194371715	3650715	38	33044										
FGFR3	0	genome.wustl.edu	37	chr4	1806180	1806181	+	Frame_Shift_Ins	INS	-	-	C													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	acgctctgccgcctgcgcagINScccccccaagaaaggcctgg							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	1806180	1806181	-	C	INS	FGFR3	ENST00000340107	human	ensembl	69_37n	1	known	frame_shift_ins	c.1205_1206	p.K405fs	0.996:0.987	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR3	HGNC	ENSG00000068078	35	0	0	23	3	11.54	-	-	-	C	1806181	-	C	1806180	7	5	291	1	0	1	1	0	0	0	0	0	5913	971	34	0	1384	0	FGFR3	4	1806180	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09		1806180	189348096	39	33045										
KIAA0232	0	genome.wustl.edu	37	chr4	6865760	6865760	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttggaatgtagcatgaatgaAtccctggaaatagatttaga	10	4	0	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	6865760	6865760	A	G	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	silent	c.3651	p.E1217	0.003	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	118	0	0	38	37	49.33	-	-	-	G	6865760	A	G	6865760	2	3	291	1	0	0	0	0	0	0	0	1	8215	98	4	5		5	KIAA0232	4	6865760	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	5059580	6865760	184288516	40	33046										
PROM1	0	genome.wustl.edu	37	chr4	15991372	15991372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taccagtgattgttctatagGaaggactcgttgctggtgaa	12	6	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	15991372	15991372	G	C	SNP	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	missense	c.2059	p.P687A	0.474	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	222	0	0	107	107	50	-	-	-	C	15991372	G	C	15991372	3	2	291	1	0	0	0	0	1	0	0	0	12636	1174	41	2	574	2	PROM1	4	15991372	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	9125612	15991372	175162904	41	33047										
SEPSECS	0	genome.wustl.edu	37	chr4	25160722	25160722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	catcccagccattctctggaCacttgcccttaaaaaaaaaa	4	13	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	25160722	25160722	C	A	SNP	SEPSECS	ENST00000382103	human	ensembl	69_37n	-1	known	missense	c.122	p.C41F	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Sec-tRNA_Se_transferase	pfam_SLA/LP_auto_ag,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Sec-tRNA_Se_transferase	-	no_errors	SEPSECS	HGNC	ENSG00000109618	181	0	0	64	61	48.8	-	-	-	A	25160722	C	A	25160722	3	1	291	1	0	0	0	0	1	0	0	0	14146	478	17	4	1423	4	SEPSECS	4	25160722	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	9169350	25160722	165993554	42	33048										
CORIN	0	genome.wustl.edu	37	chr4	47647207	47647207	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcccaaagatctctctctttAcaacctagagacagaagaaa	5	11	2	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	47647207	47647207	A	C	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.1848	p.C616W	0.975	pirsf_Peptidase_S1A_corin,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	228	0	0	198	78	28.16	-	-	-	C	47647207	A	C	47647207	3	2	291	1	0	0	0	0	1	0	0	0	3782	389	14	5	1316	5	CORIN	4	47647207	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	22486485	47647207	143507069	43	33049										
SPATA18	0	genome.wustl.edu	37	chr4	52943137	52943137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcccaggcccgcctggacgcGcagtgcctgctgcggcgctg	15	17	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	52943137	52943137	G	A	SNP	SPATA18	ENST00000295213	human	ensembl	69_37n	1	known	silent	c.951	p.A317	0.784	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	94	0	0	38	31	44.29	-	-	-	A	52943137	G	A	52943137	2	1	291	1	0	0	0	0	0	0	0	1	15094	1074	38	1		1	SPATA18	4	52943137	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	5295930	52943137	138211139	44	33050										
SRP72	0	genome.wustl.edu	37	chr4	57333819	57333820	+	Frame_Shift_Ins	INS	-	-	G													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agatggcgagcggcggcagcINSgggggggtgtcagtacctgc							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	57333819	57333820	-	G	INS	SRP72	ENST00000342756	human	ensembl	69_37n	1	known	frame_shift_ins	c.18_19	p.V8fs	0.414:0.920	NULL	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780	25	0	0	26	3	10.34	-	-	-	G	57333820	-	G	57333819	7	5	291	1	0	1	1	0	0	0	0	0	15248	767	27	0	20	0	SRP72	4	57333819	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	4390682	57333819	133820457	45	33051										
EPHA5	0	genome.wustl.edu	37	chr4	66468004	66468004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aggggcataattttcatccaCttcaccaatctcttcccact	4	14	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	66468004	66468004	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.265	p.V89M	1.000	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom,pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	119	0	0	50	42	45.65	-	-	-	T	66468004	C	T	66468004	3	4	291	1	0	0	0	0	1	0	0	0	5207	565	20	4	2912	4	EPHA5	4	66468004	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	9134185	66468004	124686272	46	33052										
SEC31A	0	genome.wustl.edu	37	chr4	83802025	83802025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaggtctaattcaaatatctCaagggaagcattcgtactaa	8	7	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	83802025	83802025	C	G	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.130	p.E44Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	145	0	0	67	50	42.74	-	-	-	G	83802025	C	G	83802025	3	3	291	1	0	0	0	0	1	0	0	0	14086	835	29	2	3632	2	SEC31A	4	83802025	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	17334021	83802025	107352251	47	33053										
HELQ	0	genome.wustl.edu	37	chr4	84350883	84350883	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcatgaaatgatagatgtcaTcaagattcgttgcaatctga	8	6	4	5			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	84350883	84350883	T	G	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.2312	p.D771A	0.186	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	53	0	0	38	28	42.42	-	-	-	G	84350883	T	G	84350883	3	3	291	1	0	0	0	0	1	0	0	0	7098	1435	50	5	1021	5	HELQ	4	84350883	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	548858	84350883	106803393	48	33054										
SPP1	0	genome.wustl.edu	37	chr4	88902730	88902730	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggactccattgactcgaacgActctgatgatgtagatgaca	10	9	1	5			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	88902730	88902730	A	C	SNP	SPP1	ENST00000395080	human	ensembl	69_37n	1	known	missense	c.320	p.D107A	0.133	pfam_Osteopontin,smart_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785	114	0	0	44	51	53.68	-	-	-	C	88902730	A	C	88902730	3	2	291	1	0	0	0	0	1	0	0	0	15177	275	10	5	338	5	SPP1	4	88902730	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	4551847	88902730	102251546	49	33055										
ANK2	0	genome.wustl.edu	37	chr4	114276056	114276056	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ctcagccacaaaatacctgaAcctgttcagtcagtgcctga	7	13	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	114276056	114276056	A	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.6282	p.E2094D	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	102	0	0	111	43	27.92	-	-	-	T	114276056	A	T	114276056	3	4	291	1	0	0	0	0	1	0	0	0	621	40	2	5	6497	5	ANK2	4	114276056	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	25373326	114276056	76878220	50	33056										
SYNPO2	0	genome.wustl.edu	37	chr4	119810233	119810233	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgcatttccatgactggaggGgcgccctgggggttcagatt	15	9	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	4	119810233	119810233	G	T	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	silent	c.42	p.G14	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	227	0	0	6	173	96.11	-	-	-	T	119810233	G	T	119810233	2	4	291	1	0	0	0	0	0	0	0	1	15549	1219	43	4		4	SYNPO2	4	119810233	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	5534177	119810233	71344043	51	33057										
RANBP3L	0	genome.wustl.edu	37	chr5	36262047	36262047	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tctcattaacttaccctactGatgttgcacctaaaaagtcc	4	12	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	5	36262047	36262047	G	C	SNP	RANBP3L	ENST00000296604	human	ensembl	69_37n	-1	known	nonsense	c.578	p.S193*	0.387	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3L	HGNC	ENSG00000164188	135	0	0	75	48	39.02	-	-	-	C	36262047	G	C	36262047	4	2	291	1	0	0	0	0	0	1	0	0	13113	1294	45	2	851	2	RANBP3L	5	36262047	Nonsense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		36262047	144653213	52	33058										
PCDHA1	0	genome.wustl.edu	37	chr5	140168170	140168170	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgctctagcgagggcccaccCaagaccgacctcatggcctt	10	16	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	5	140168170	140168170	C	G	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.2295	p.P765	0.659	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	69	0	0	9	41	82	-	-	-	G	140168170	C	G	140168170	2	3	291	1	0	0	0	0	0	0	0	1	11592	581	21	4		4	PCDHA1	5	140168170	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	103906123	140168170	40747090	53	33059										
PCDHB5	0	genome.wustl.edu	37	chr5	140516039	140516039	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaagtggtggatgtgaatgaCaacgcccctgaactcaccat	11	10	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	5	140516039	140516039	C	A	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	missense	c.1023	p.D341E	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	136	0	0	6	59	90.77	-	-	-	A	140516039	C	A	140516039	3	1	291	1	0	0	0	0	1	0	0	0	11618	477	17	4	1025	4	PCDHB5	5	140516039	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	347869	140516039	40399221	54	33060										
HLA-B	0	genome.wustl.edu	37	chr6	31322985	31322985	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgcccacgatggggacggtgGactgggaagacggctctggg	19	9	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	31322985	31322985	G	C	SNP	HLA-B	ENST00000412585	human	ensembl	69_37n	-1	known	missense	c.911	p.S304C	0.002	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-B	HGNC	ENSG00000234745	21	0	0	30	9	23.08	-	-	-	C	31322985	G	C	31322985	3	2	291	1	0	0	0	0	1	0	0	0	7247	1174	41	2	189	2	HLA-B	6	31322985	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		31322985	139792082	55	33061										
PACSIN1	0	genome.wustl.edu	37	chr6	34499505	34499505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggacgactccaagggagtgcGcgtgcgggcactctacgact	15	12	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	34499505	34499505	G	A	SNP	PACSIN1	ENST00000244458	human	ensembl	69_37n	1	known	missense	c.1166	p.R389H	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN1	HGNC	ENSG00000124507	76	0	0	17	43	71.67	-	-	-	A	34499505	G	A	34499505	3	1	291	1	0	0	0	0	1	0	0	0	11447	1087	38	1	1196	1	PACSIN1	6	34499505	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	3176520	34499505	136615562	56	33062										
PNPLA1	0	genome.wustl.edu	37	chr6	36275467	36275467	+	Frame_Shift_Del	DEL	A	A	-													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcccaagacattcgggatccAaaaaaccaagcagcaaagtg							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	36275467	36275467	A	-	DEL	PNPLA1	ENST00000457797	human	ensembl	69_37n	1	known	frame_shift_del	c.1576	p.K527fs	0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316	123	0	0	101	43	29.45	-	-	-	-	36275467	A	-	36275467	7	5	291	1	0	1	0	1	0	0	0	0	12238	131	5	0	1630	0	PNPLA1	6	36275467	Frame_Shift_Del	DEL	A	TCGA-AN-A0FL-01A-11W-A050-09	1775962	36275467	134839600	57	33063	267	2								
PNPLA1	0	genome.wustl.edu	37	chr6	36275473	36275473	+	Missense_Mutation	SNP	C	C	G													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gacattcgggatccaaaaaaCcaagcagcaaagtgcagtga							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	36275473	36275473	C	G	SNP	PNPLA1	ENST00000457797	human	ensembl	69_37n	1	known	missense	c.1582	p.P528A	0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316	124	0	0	96	45	31.91	-	-	-	G	36275473	C	G	36275473	3	3	291	1	0	0	0	0	1	0	0	0	12238	507	18	4	1636	4	PNPLA1	6	36275473	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	6	36275473	134839594	58	33064	267	2								
XPO5	0	genome.wustl.edu	37	chr6	43535089	43535089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctactcgacagtttgcttgCgcctaccagaaaagaagtaa	8	11	0	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	43535089	43535089	C	T	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	silent	c.651	p.A217	0.998	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	53	0	0	34	26	42.62	-	-	-	T	43535089	C	T	43535089	2	4	291	1	0	0	0	0	0	0	0	1	17544	755	27	1		1	XPO5	6	43535089	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	7259616	43535089	127579978	59	33065										
PLA2G7	0	genome.wustl.edu	37	chr6	46684756	46684756	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gtctgtacaaccaacggaatAaggcccatttccccggggga	11	12	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	46684756	46684756	A	T	SNP	PLA2G7	ENST00000274793	human	ensembl	69_37n	-1	known	missense	c.187	p.Y63N	0.979	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	-	no_errors	PLA2G7	HGNC	ENSG00000146070	227	0	0	238	98	28.91	-	-	-	T	46684756	A	T	46684756	3	4	291	1	0	0	0	0	1	0	0	0	12083	362	13	5	1178	5	PLA2G7	6	46684756	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	3149667	46684756	124430311	60	33066										
DEFB113	0	genome.wustl.edu	37	chr6	49936517	49936517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgttgcattccggcttgcaaGcaccacgaacaagctgacat	9	12	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	49936517	49936517	G	A	SNP	DEFB113	ENST00000398718	human	ensembl	69_37n	-1	known	missense	c.122	p.A41V	0.000	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642	135	0	0	158	64	28.83	-	-	-	A	49936517	G	A	49936517	3	1	291	1	0	0	0	0	1	0	0	0	4437	971	34	4	122	4	DEFB113	6	49936517	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	3251761	49936517	121178550	61	33067										
LGSN	0	genome.wustl.edu	37	chr6	63990398	63990398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccatcaggcagctgagcgcaGcagagtgcttcaagagtcct	12	12	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	63990398	63990398	G	A	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	missense	c.1058	p.A353V	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	51	0	0	30	18	37.5	-	-	-	A	63990398	G	A	63990398	3	1	291	1	0	0	0	0	1	0	0	0	8814	971	34	4	475	4	LGSN	6	63990398	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	14053881	63990398	107124669	62	33068										
RIMS1	0	genome.wustl.edu	37	chr6	72596812	72596812	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcccgacctgagccacctgaCcgaagaggagaggaacatta	12	12	0	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	72596812	72596812	C	G	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.86	p.T29S	1.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	63	0	0	37	5	11.9	-	-	-	G	72596812	C	G	72596812	3	3	291	1	0	0	0	0	1	0	0	0	13453	507	18	4	88	4	RIMS1	6	72596812	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	8606414	72596812	98518255	63	33069										
CD109	0	genome.wustl.edu	37	chr6	74446225	74446225	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gactggtctattcaagttcaAgtgaatgtgagtataaatat	9	4	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	74446225	74446225	A	T	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.627	p.Q209H	1.000	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	132	0	0	7	48	87.27	-	-	-	T	74446225	A	T	74446225	3	4	291	1	0	0	0	0	1	0	0	0	2992	69	3	5	645	5	CD109	6	74446225	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	1849413	74446225	96668842	64	33070										
SEC63	0	genome.wustl.edu	37	chr6	108246121	108246121	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aagaacaatgcccatcctgcAagcagaactattttcctgtt	6	11	0	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	108246121	108246121	A	C	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	silent	c.240	p.L80	1.000	NULL	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	133	0	0	64	49	43.36	-	-	-	C	108246121	A	C	108246121	2	2	291	1	0	0	0	0	0	0	0	1	14093	117	5	5		5	SEC63	6	108246121	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	33799896	108246121	62868946	65	33071										
SEC63	0	genome.wustl.edu	37	chr6	108250658	108250658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttggctggggttttaataacCgtaaacgataccacatacac	8	9	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	108250658	108250658	C	T	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	missense	c.185	p.R62Q	1.000	NULL	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	173	0	0	140	89	38.86	-	-	-	T	108250658	C	T	108250658	3	4	291	1	0	0	0	0	1	0	0	0	14093	652	23	1	2177	1	SEC63	6	108250658	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	4537	108250658	62864409	66	33072										
ZBTB24	0	genome.wustl.edu	37	chr6	109787658	109787658	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtctaagcgagcaaactgtAagttacactcagggcaggag	12	8	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	109787658	109787658	A	C	SNP	ZBTB24	ENST00000230122	human	ensembl	69_37n	-1	known	nonsense	c.1490	p.L497*	0.035	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365	122	0	0	46	41	47.13	-	-	-	C	109787658	A	C	109787658	4	2	291	1	0	0	0	0	0	1	0	0	17627	372	13	5	607	5	ZBTB24	6	109787658	Nonsense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	1537000	109787658	61327409	67	33073										
ZUFSP	0	genome.wustl.edu	37	chr6	116973262	116973262	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cccaacctttgtcgcctaaaGatgaatgaaagtgatccacc	7	12	0	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	116973262	116973262	G	C	SNP	ZUFSP	ENST00000368576	human	ensembl	69_37n	-1	known	missense	c.1055	p.S352C	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975	255	0	0	113	79	40.93	-	-	-	C	116973262	G	C	116973262	3	2	291	1	0	0	0	0	1	0	0	0	18337	942	33	2	701	2	ZUFSP	6	116973262	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	7185604	116973262	54141805	68	33074										
SLC22A2	0	genome.wustl.edu	37	chr6	160670398	160670398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccactgttctccgatatctcCgcccaacaaattctgtaact	4	15	3	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	160670398	160670398	C	T	SNP	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	missense	c.692	p.R231Q	0.109	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	161	0	0	97	66	40.24	-	-	-	T	160670398	C	T	160670398	3	4	291	1	0	0	0	0	1	0	0	0	14540	652	23	1	1007	1	SLC22A2	6	160670398	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	43697136	160670398	10444669	69	33075										
TBP	0	genome.wustl.edu	37	chr6	170878735	170878735	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	actggcagcaagaaaatatgCtagagttgtacagaagttgg	12	5	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	6	170878735	170878735	C	A	SNP	TBP	ENST00000446829	human	ensembl	69_37n	1	known	nonsense	c.36	p.C12*	1.000	NULL	pfam_TBP,prints_TBP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TBP	HGNC	ENSG00000112592	269	0	0	116	145	55.56	-	-	-	A	170878735	C	A	170878735	4	1	291	1	0	0	0	0	0	1	0	0	15739	797	28	4	731	4	TBP	6	170878735	Nonsense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	10208337	170878735	236332	70	33076										
FBXL18	0	genome.wustl.edu	37	chr7	5540818	5540818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctccgccttgcggagcagcGagtctggggacaggcagtgg	17	12	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	5540818	5540818	G	A	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361L	0.167	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	38	0	0	12	7	36.84	-	-	-	A	5540818	G	A	5540818	3	1	291	1	0	0	0	0	1	0	0	0	5760	1059	37	1	1086	1	FBXL18	7	5540818	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		5540818	153597845	71	33077										
CYTH3	0	genome.wustl.edu	37	chr7	6210838	6210838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gggctctgcactgacctgtgGactggaagaccccggggttg	16	11	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	6210838	6210838	G	T	SNP	CYTH3	ENST00000350796	human	ensembl	69_37n	-1	known	missense	c.557	p.S186Y	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH3	HGNC	ENSG00000008256	90	0	0	55	23	29.49	-	-	-	T	6210838	G	T	6210838	3	4	291	1	0	0	0	0	1	0	0	0	4236	1174	41	2	670	2	CYTH3	7	6210838	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	670020	6210838	152927825	72	33078										
DFNA5	0	genome.wustl.edu	37	chr7	24738784	24738784	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taatgtcagctgaggcaaacAagcgctgcacaatcccaaac	8	12	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	24738784	24738784	A	T	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	nonsense	c.1352	p.L451*	0.977	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	76	0	0	70	26	27.08	-	-	-	T	24738784	A	T	24738784	4	4	291	1	0	0	0	0	0	1	0	0	4490	131	5	5	142	5	DFNA5	7	24738784	Nonsense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	18527946	24738784	134399879	73	33079										
OSBPL3	0	genome.wustl.edu	37	chr7	24911625	24911625	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tttcagcaaaaatcctttctGaactggtggctcctgggtgt	10	9	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	24911625	24911625	G	A	SNP	OSBPL3	ENST00000313367	human	ensembl	69_37n	-1	known	nonsense	c.160	p.Q54*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	179	0	0	86	150	63.56	-	-	-	A	24911625	G	A	24911625	4	1	291	1	0	0	0	0	0	1	0	0	11352	1299	45	2	2587	2	OSBPL3	7	24911625	Nonsense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	172841	24911625	134227038	74	33080										
NOD1	0	genome.wustl.edu	37	chr7	30469058	30469058	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcagtccccttagctgtgatCtgattctggataagcctgaa	10	10	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	30469058	30469058	C	A	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.2721	p.Q907H	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	70	0	0	23	32	58.18	-	-	-	A	30469058	C	A	30469058	3	1	291	1	0	0	0	0	1	0	0	0	10588	912	32	2	148	2	NOD1	7	30469058	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	5557433	30469058	128669605	75	33081										
GNAT3	0	genome.wustl.edu	37	chr7	80108225	80108225	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcctgaattcctggatctctCcacagccgttttattacctc	6	14	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	80108225	80108225	C	T	SNP	GNAT3	ENST00000398291	human	ensembl	69_37n	-1	known	nonsense	c.393	p.W131*	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415	241	0	0	141	56	28.43	-	-	-	T	80108225	C	T	80108225	4	4	291	1	0	0	0	0	0	1	0	0	6565	856	30	2	689	2	GNAT3	7	80108225	Nonsense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	49639167	80108225	79030438	76	33082										
MUC17	0	genome.wustl.edu	37	chr7	100686047	100686047	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	catctgtttacaccagcatgTctatgaccactgcctctgaa	6	13	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	100686047	100686047	T	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.11350	p.S3784T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	40	0	0	18	42	70	-	-	-	A	100686047	T	A	100686047	3	1	291	1	0	0	0	0	1	0	0	0	10046	1667	58	5	11360	5	MUC17	7	100686047	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	20577822	100686047	58452616	77	33083										
KCND2	0	genome.wustl.edu	37	chr7	120387849	120387849	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccagtaaccacaccagaaggAgacgataggccagaatcccc	9	14	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	120387849	120387849	A	G	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	silent	c.1830	p.G610	1.000	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	115	0	0	60	34	36.17	-	-	-	G	120387849	A	G	120387849	2	3	291	1	0	0	0	0	0	0	0	1	8073	291	11	5		5	KCND2	7	120387849	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	19701802	120387849	38750814	78	33084										
PLXNA4	0	genome.wustl.edu	37	chr7	131883300	131883300	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cactccacgccagcaaccttGacatgggaggcgatgtcgcg	12	14	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	7	131883300	131883300	G	C	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.2682	p.V894	0.998	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	146	0	0	96	38	28.36	-	-	-	C	131883300	G	C	131883300	2	2	291	1	0	0	0	0	0	0	0	1	12196	1277	45	2		2	PLXNA4	7	131883300	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	11495451	131883300	27255363	79	33085										
CSMD1	0	genome.wustl.edu	37	chr8	3265726	3265726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaataatcccagatgatgccGtaaagttgaagaaacatgaa	9	6	0	5			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	3265726	3265726	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.1769	p.T590M	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	51	0	0	22	22	50	-	-	-	A	3265726	G	A	3265726	3	1	291	1	0	0	0	0	1	0	0	0	3976	1145	40	1	9156	1	CSMD1	8	3265726	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		3265726	143098296	80	33086										
PXDNL	0	genome.wustl.edu	37	chr8	52366148	52366148	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggcatgacaggtaaatcgacCatgatcccgttgtgtgatgt	12	8	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	52366148	52366148	C	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1180	p.G394C	0.190	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	102	0	0	51	45	46.88	-	-	-	A	52366148	C	A	52366148	3	1	291	1	0	0	0	0	1	0	0	0	12931	594	21	4	3267	4	PXDNL	8	52366148	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	49100422	52366148	93997874	81	33087										
PENK	0	genome.wustl.edu	37	chr8	57358417	57358417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cgcactaggcggtagctgcaCgtcgcgcaatcctggctgca	13	14	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	57358417	57358417	C	T	SNP	PENK	ENST00000314922	human	ensembl	69_37n	-1	known	silent	c.96	p.T32	0.007	pfam_Opioid_neupept,prints_Opioid_neupept	pfam_Opioid_neupept,prints_Proenkphlin_A,prints_Opioid_neupept	-	no_errors	PENK	HGNC	ENSG00000181195	29	0	0	11	4	26.67	-	-	-	T	57358417	C	T	57358417	2	4	291	1	0	0	0	0	0	0	0	1	11800	523	19	1		1	PENK	8	57358417	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	4992269	57358417	89005605	82	33088										
ZFHX4	0	genome.wustl.edu	37	chr8	77617914	77617914	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctcctcggcgactgtttctGatgacacagaaaagaaaaaa	8	10	1	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	77617914	77617914	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.1591	p.D531N	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	53	0	0	39	16	29.09	-	-	-	A	77617914	G	A	77617914	3	1	291	1	0	0	0	0	1	0	0	0	17731	1290	45	2	1593	2	ZFHX4	8	77617914	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	20259497	77617914	68746108	83	33089										
ZFPM2	0	genome.wustl.edu	37	chr8	106815139	106815139	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcaaccctgcaaggcttgaaGgtctttagtgaagctgctca	11	10	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	106815139	106815139	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	silent	c.2829	p.K943	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	26	0	0	35	16	31.37	-	-	-	A	106815139	G	A	106815139	2	1	291	1	0	0	0	0	0	0	0	1	17754	991	35	4		4	ZFPM2	8	106815139	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	29197225	106815139	39548883	84	33090										
MRPL13	0	genome.wustl.edu	37	chr8	121432115	121432115	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	atctggaaaaagatgcaaccTttccatcattgttcttctgt	6	9	4	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	121432115	121432115	T	C	SNP	MRPL13	ENST00000306185	human	ensembl	69_37n	-1	known	missense	c.370	p.R124G	1.000	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,pirsf_Ribosomal_L13,tigrfam_Ribosomal_L13_bac-type	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,pirsf_Ribosomal_L13,tigrfam_Ribosomal_L13_bac-type	-	no_errors	MRPL13	HGNC	ENSG00000172172	100	0	0	146	35	19.23	-	-	-	C	121432115	T	C	121432115	3	2	291	1	0	0	0	0	1	0	0	0	9850	1608	56	5	178	5	MRPL13	8	121432115	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	14616976	121432115	24931907	85	33091										
ADCY8	0	genome.wustl.edu	37	chr8	131826440	131826440	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ctcctctttggcctgtactcGccaaaggaagtccaggcggg	12	13	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	131826440	131826440	G	T	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	silent	c.2788	p.R930	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	127	0	0	256	57	18.21	-	-	-	T	131826440	G	T	131826440	2	4	291	1	0	0	0	0	0	0	0	1	300	1095	38	3		3	ADCY8	8	131826440	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	10394325	131826440	14537582	86	33092										
TG	0	genome.wustl.edu	37	chr8	133898735	133898735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cgaaaggcagcaggccttgtCcagactctactttgggacct	11	12	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	133898735	133898735	C	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.1118	p.S373F	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	76	0	0	149	24	13.87	-	-	-	T	133898735	C	T	133898735	3	4	291	1	0	0	0	0	1	0	0	0	15908	855	30	2	1152	2	TG	8	133898735	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	2072295	133898735	12465287	87	33093										
C8orf31	0	genome.wustl.edu	37	chr8	144126093	144126093	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctctgccctggcaccccagGgactcactgccaaagacgct	9	18	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	8	144126093	144126093	G	T	SNP	C8orf31	ENST00000395172	human	ensembl	69_37n	1	known	nonsense	c.214	p.G72*	0.343	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335	106	0	0	141	44	23.66	-	-	-	T	144126093	G	T	144126093	4	4	291	1	0	0	0	0	0	1	0	0	2444	1233	43	4	224	4	C8orf31	8	144126093	Nonsense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	10227358	144126093	2237929	88	33094										
CER1	0	genome.wustl.edu	37	chr9	14722336	14722336	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttccatctatcggctggatgAgggactgggtcccaggtggg	16	9	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	9	14722336	14722336	A	G	SNP	CER1	ENST00000380911	human	ensembl	69_37n	-1	known	missense	c.335	p.L112P	0.000	pirsf_Cerberus	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Cerberus,pfscan_Cys_knot_C	-	no_errors	CER1	HGNC	ENSG00000147869	219	0	0	90	59	39.6	-	-	-	G	14722336	A	G	14722336	3	3	291	1	0	0	0	0	1	0	0	0	3294	304	11	5	476	5	CER1	9	14722336	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09		14722336	126491095	89	33095										
FRMD3	0	genome.wustl.edu	37	chr9	85950510	85950510	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaaaatctcaaactcactgaTgtaattctcaggatgctcat	6	9	4	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	9	85950510	85950510	T	C	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.517	p.I173V	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	221	0	0	94	93	49.73	-	-	-	C	85950510	T	C	85950510	3	2	291	1	0	0	0	0	1	0	0	0	6099	1464	51	5	1312	5	FRMD3	9	85950510	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	71228174	85950510	55262921	90	33096										
CORO2A	0	genome.wustl.edu	37	chr9	100895427	100895427	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggacatggagaggatcacatCttggtgacagctaatcgtac	12	8	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	9	100895427	100895427	C	G	SNP	CORO2A	ENST00000343933	human	ensembl	69_37n	-1	known	missense	c.541	p.D181H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789	106	0	0	49	27	35.53	-	-	-	G	100895427	C	G	100895427	3	3	291	1	0	0	0	0	1	0	0	0	3786	913	32	2	1068	2	CORO2A	9	100895427	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	14944917	100895427	40318004	91	33097										
LPAR1	0	genome.wustl.edu	37	chr9	113637769	113637769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gttgagggaggaagccgagcGgtctgagccttctgtggggc	19	8	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	9	113637769	113637769	G	A	SNP	LPAR1	ENST00000538760	human	ensembl	69_37n	-1	known	missense	c.1030	p.R344C	1.000	prints_LPA_rcpt_EDG2	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121	435	0	0	182	164	47.4	-	-	-	A	113637769	G	A	113637769	3	1	291	1	0	0	0	0	1	0	0	0	8970	1116	39	1	71	1	LPAR1	9	113637769	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	12742342	113637769	27575662	92	33098										
CCBL1	0	genome.wustl.edu	37	chr9	131600646	131600649	+	Frame_Shift_Del	DEL	CCTG	CCTG	-													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cttcgtcagtggtgggtaacCctgccaggacagcaggggtt							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	CCTG	CCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	9	131600646	131600649	CCTG	-	DEL	CCBL1	ENST00000436267	human	ensembl	69_37n	-1	known	frame_shift_del	c.484	p.G162fs	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	CCBL1	HGNC	ENSG00000171097	36	0	0	18	3	14.29	-	-	-	-	131600649	CCTG	-	131600646	7	5	291	1	0	1	0	1	0	0	0	0	2757	637	22	0	1106	0	CCBL1	9	131600646	Frame_Shift_Del	DEL	CCTG	TCGA-AN-A0FL-01A-11W-A050-09	17962877	131600646	9612785	93	33099										
DIP2C	0	genome.wustl.edu	37	chr10	461709	461711	+	In_Frame_Del	DEL	CTT	CTT	-													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gtggtaaagagttctctcacCttctaataattcttcaaagt							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	10	461709	461711	CTT	-	DEL	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	in_frame_del	c.859_857	p.E286in_frame_del	1.000:1.000:1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	155	0	0	74	11	12.94	-	-	-	-	461711	CTT	-	461709	7	5	291	1	0	1	0	1	0	0	0	0	4565	695	24	0	3935	0	DIP2C	10	461709	In_Frame_Del	DEL	CTT	TCGA-AN-A0FL-01A-11W-A050-09		461709	135073038	94	33100										
HSPA14	0	genome.wustl.edu	37	chr10	14913531	14913531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttttttgtctgtttagggatGgatctttacatgtgacatgc	10	5	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	10	14913531	14913531	G	A	SNP	HSPA14	ENST00000378372	human	ensembl	69_37n	1	known	missense	c.1456	p.G486R	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	92	0	0	43	25	36.76	-	-	-	A	14913531	G	A	14913531	3	1	291	1	0	0	0	0	1	0	0	0	7460	1349	47	4	1510	4	HSPA14	10	14913531	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	14451822	14913531	120621216	95	33101										
CCAR1	0	genome.wustl.edu	37	chr10	70507310	70507310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccacagcccttattacagcaGcctcagcaaaaaggtatctt	6	13	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	10	70507310	70507310	G	T	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.813	p.Q271H	0.982	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	108	0	0	39	34	46.58	-	-	-	T	70507310	G	T	70507310	3	4	291	1	0	0	0	0	1	0	0	0	2755	962	34	4	839	4	CCAR1	10	70507310	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	55593779	70507310	65027437	96	33102										
DNTT	0	genome.wustl.edu	37	chr10	98064440	98064440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcccgcaggaaagggttcagGgttgaaaatgagctcaggta	15	7	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	10	98064440	98064440	G	T	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.186	p.R62S	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	134	1	0.74	58	39	40.21	-	-	-	T	98064440	G	T	98064440	3	4	291	1	0	0	0	0	1	0	0	0	4715	1223	43	4	188	4	DNTT	10	98064440	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	27557130	98064440	37470307	97	33103										
FGFR2	0	genome.wustl.edu	37	chr10	123258034	123258034	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtgtgcaggctccaagaagAtttatgatattcttgtgttt	10	5	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	10	123258034	123258034	A	C	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1650	p.N550K	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	114	0	0	48	90	64.75	-	-	-	C	123258034	A	C	123258034	3	2	291	1	0	0	0	0	1	0	0	0	5912	330	12	5	950	5	FGFR2	10	123258034	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	25193594	123258034	12276713	98	33104										
NAV2	0	genome.wustl.edu	37	chr11	20122549	20122549	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcccaagcccatcctgcagcGctacgtctccctcctgatag	7	18	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	20122549	20122549	G	C	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.6425	p.R2142P	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	133	0	0	65	54	45.38	-	-	-	C	20122549	G	C	20122549	3	2	291	1	0	0	0	0	1	0	0	0	10256	1087	38	3	6492	3	NAV2	11	20122549	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		20122549	114883967	99	33105										
DGKZ	0	genome.wustl.edu	37	chr11	46400752	46400753	+	Frame_Shift_Ins	INS	-	-	CC													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	caccacctccccttctccagINScccccccagagatccttgat							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	46400752	46400753	-	CC	INS	DGKZ	ENST00000454345	human	ensembl	69_37n	1	known	frame_shift_ins	c.3105_3104	p.E1038fs	0.999:0.958	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091	13	0	0	5	3	37.5	-	-	-	CC	46400753	-	CC	46400752	7	5	291	1	0	1	1	0	0	0	0	0	4510	985	34	0	3664	0	DGKZ	11	46400752	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	26278203	46400752	88605764	100	33106										
AMBRA1	0	genome.wustl.edu	37	chr11	46419206	46419206	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	accaggctggtcccaggaagCtgtccgggggcttaggcctc	15	13	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	46419206	46419206	C	G	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.3691	p.A1231P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	105	0	0	52	27	34.18	-	-	-	G	46419206	C	G	46419206	3	3	291	1	0	0	0	0	1	0	0	0	565	797	28	4	209	4	AMBRA1	11	46419206	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	18454	46419206	88587310	101	33107										
CKAP5	0	genome.wustl.edu	37	chr11	46766095	46766095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cactgtgcttgtgggcgtggGcacacatgtgacttccatct	12	11	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	46766095	46766095	G	C	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.5758	p.P1920A	0.992	NULL	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	142	0	0	57	41	41.84	-	-	-	C	46766095	G	C	46766095	3	2	291	1	0	0	0	0	1	0	0	0	3475	1203	42	4	369	4	CKAP5	11	46766095	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	346889	46766095	88240421	102	33108										
C11orf30	0	genome.wustl.edu	37	chr11	76207278	76207278	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggtgtatctacatcagcaatCaaaatggcatcaaccagact	7	10	4	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	76207278	76207278	C	G	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.1128	p.I376M	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	126	0	0	49	52	51.49	-	-	-	G	76207278	C	G	76207278	3	3	291	1	0	0	0	0	1	0	0	0	1647	816	29	2	1158	2	C11orf30	11	76207278	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	29441183	76207278	58799238	103	33109										
ANKRD42	0	genome.wustl.edu	37	chr11	82959055	82959055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aaaaattagaatgtcagcttGatgaatatcgagcagaagtt	9	4	1	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	82959055	82959055	G	C	SNP	ANKRD42	ENST00000533342	human	ensembl	69_37n	1	putative	missense	c.1393	p.D465H	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD42	HGNC	ENSG00000137494	339	0	0	169	112	39.86	-	-	-	C	82959055	G	C	82959055	3	2	291	1	0	0	0	0	1	0	0	0	669	1305	45	2		2	ANKRD42	11	82959055	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	6751777	82959055	52047461	104	33110										
OR10S1	0	genome.wustl.edu	37	chr11	123848324	123848324	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tacctcaaaccctccaggaaGaagtggctcaccacagtctg	8	14	3	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	11	123848324	123848324	G	A	SNP	OR10S1	ENST00000531945	human	ensembl	69_37n	-1	known	silent	c.75	p.F25	0.936	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	61	0	0	47	22	31.88	-	-	-	A	123848324	G	A	123848324	2	1	291	1	0	0	0	0	0	0	0	1	10991	933	33	2		2	OR10S1	11	123848324	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	40889269	123848324	11158192	105	33111										
KDM5A	0	genome.wustl.edu	37	chr12	427354	427354	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tagttcagccattgctttctCcacagcatggtggggtgcca	11	11	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	427354	427354	C	G	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.2815	p.E939Q	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	125	0	0	12	29	69.05	-	-	-	G	427354	C	G	427354	3	3	291	1	0	0	0	0	1	0	0	0	8186	864	30	2	2297	2	KDM5A	12	427354	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09		427354	133424541	106	33112										
FAR2	0	genome.wustl.edu	37	chr12	29464069	29464069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tagctgtaggatggtatactGcagttcacaggtgtggatgc	14	6	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	29464069	29464069	G	T	SNP	FAR2	ENST00000182377	human	ensembl	69_37n	1	known	missense	c.877	p.A293S	1.000	NULL	pfam_Male_sterile_NAD-bd,pfam_Malesterile,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763	147	0	0	10	53	84.13	-	-	-	T	29464069	G	T	29464069	3	4	291	1	0	0	0	0	1	0	0	0	5721	1319	46	4	899	4	FAR2	12	29464069	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	29036715	29464069	104387826	107	33113										
C12orf40	0	genome.wustl.edu	37	chr12	40114937	40114937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tagatgttgccatacagtgtGatctaatttcaaaatgtaca	7	6	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	40114937	40114937	G	A	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.1843	p.D615N	0.084	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	119	0	0	46	36	43.9	-	-	-	A	40114937	G	A	40114937	3	1	291	1	0	0	0	0	1	0	0	0	1698	1290	45	2	1893	2	C12orf40	12	40114937	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	10650868	40114937	93736958	108	33114										
NCKAP1L	0	genome.wustl.edu	37	chr12	54891635	54891635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gctcactatcctgaatgatcGcggtcagggggttctcatcc	11	12	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	54891635	54891635	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.62	p.R21H	0.997	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	100	0	0	66	9	11.84	-	-	-	A	54891635	G	A	54891635	3	1	291	1	0	0	0	0	1	0	0	0	10294	1087	38	1	64	1	NCKAP1L	12	54891635	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	14776698	54891635	78960260	109	33115										
BEST3	0	genome.wustl.edu	37	chr12	70049341	70049341	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccttctgggaagcaggatttCttccaggtgggtgaggccct	14	10	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	70049341	70049341	C	A	SNP	BEST3	ENST00000330891	human	ensembl	69_37n	-1	known	missense	c.1353	p.K451N	0.568	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	301	0	0	10	102	90.27	-	-	-	A	70049341	C	A	70049341	3	1	291	1	0	0	0	0	1	0	0	0	1410	912	32	2	657	2	BEST3	12	70049341	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	15157706	70049341	63802554	110	33116										
RIMBP2	0	genome.wustl.edu	37	chr12	130884319	130884319	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	atcaggcacttcttccaagaAgtttgagggcacaaggcctt	10	10	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	12	130884319	130884319	A	C	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.3037	p.F1013V	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	149	0	0	53	12	18.46	-	-	-	C	130884319	A	C	130884319	3	2	291	1	0	0	0	0	1	0	0	0	13447	72	3	5	129	5	RIMBP2	12	130884319	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	60834978	130884319	2967576	111	33117										
NEK5	0	genome.wustl.edu	37	chr13	52693482	52693482	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgaattgaagaaggctacaaTgttgggatgtttcatctttt	10	4	2	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	13	52693482	52693482	T	C	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.187	p.I63V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	126	0	0	62	63	50	-	-	-	C	52693482	T	C	52693482	3	2	291	1	0	0	0	0	1	0	0	0	10399	1464	51	5	2015	5	NEK5	13	52693482	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09		52693482	62476396	112	33118										
RBM26	0	genome.wustl.edu	37	chr13	79928636	79928636	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aatagtacttgaaggtactgGacccagccgctctttgactg	10	10	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	13	79928636	79928636	G	C	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	missense	c.1924	p.P642A	1.000	NULL	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	248	0	0	73	53	42.06	-	-	-	C	79928636	G	C	79928636	3	2	291	1	0	0	0	0	1	0	0	0	13209	1174	41	2	1063	2	RBM26	13	79928636	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	27235154	79928636	35241242	113	33119										
GPC5	0	genome.wustl.edu	37	chr13	92345621	92345621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtaaacagattttttgacaGtctttttcctctggtctaca	6	8	3	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	13	92345621	92345621	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.506	p.S169N	0.991	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	134	0	0	55	36	39.56	-	-	-	A	92345621	G	A	92345621	3	1	291	1	0	0	0	0	1	0	0	0	6651	1029	36	4	516	4	GPC5	13	92345621	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	12416985	92345621	22824257	114	33120										
G2E3	0	genome.wustl.edu	37	chr14	31077124	31077124	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gaatctttactatgaagctgGcaaaatgcttgccatttctt	7	8	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	14	31077124	31077124	G	T	SNP	G2E3	ENST00000206595	human	ensembl	69_37n	1	known	missense	c.1349	p.G450V	1.000	pfam_HECT,superfamily_HECT,smart_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140	137	0	0	83	57	40.71	-	-	-	T	31077124	G	T	31077124	3	4	291	1	0	0	0	0	1	0	0	0	6189	1203	42	4	1391	4	G2E3	14	31077124	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		31077124	76272416	115	33121										
C14orf105	0	genome.wustl.edu	37	chr14	57960233	57960233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gtagaatatcttccataccaGttttcttgtaaaggtggcag	9	7	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	14	57960233	57960233	G	A	SNP	C14orf105	ENST00000216445	human	ensembl	69_37n	-1	known	silent	c.201	p.N67	0.155	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557	147	0	0	55	49	47.12	-	-	-	A	57960233	G	A	57960233	2	1	291	1	0	0	0	0	0	0	0	1	1749	1020	36	4		4	C14orf105	14	57960233	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	26883109	57960233	49389307	116	33122										
GPR132	0	genome.wustl.edu	37	chr14	105517621	105517621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cacagaggctgtgtacagccTttcctccaagccgcacatgg	10	14	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	14	105517621	105517621	T	C	SNP	GPR132	ENST00000329797	human	ensembl	69_37n	-1	known	missense	c.853	p.R285G	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_G2A_lysphc_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR132	HGNC	ENSG00000183484	69	0	0	42	19	30.65	-	-	-	C	105517621	T	C	105517621	3	2	291	1	0	0	0	0	1	0	0	0	6692	1608	56	5	293	5	GPR132	14	105517621	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	47557388	105517621	1831919	117	33123										
SCG3	0	genome.wustl.edu	37	chr15	51975544	51975544	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccccacttgataataagttgAatgtggaagatgttgattca	9	6	1	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	15	51975544	51975544	A	G	SNP	SCG3	ENST00000220478	human	ensembl	69_37n	1	known	missense	c.310	p.N104D	0.695	NULL	NULL	-	no_errors	SCG3	HGNC	ENSG00000104112	136	1	0.73	12	54	81.82	-	-	-	G	51975544	A	G	51975544	3	3	291	1	0	0	0	0	1	0	0	0	13979	246	9	5	324	5	SCG3	15	51975544	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09		51975544	50555848	118	33124										
ONECUT1	0	genome.wustl.edu	37	chr15	53081468	53081469	+	Frame_Shift_Ins	INS	-	-	C													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cttgtcggtgggcatggcggINScccccgggtgggcatagtgg							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	15	53081468	53081469	-	C	INS	ONECUT1	ENST00000305901	human	ensembl	69_37n	-1	known	frame_shift_ins	c.614_613	p.A205fs	1.000:0.998	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856	64	0	0	17	3	15	-	-	-	C	53081469	-	C	53081468	7	5	291	1	0	1	1	0	0	0	0	0	10941	1203	42	0	791	0	ONECUT1	15	53081468	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	1105924	53081468	49449924	119	33125										
SIN3A	0	genome.wustl.edu	37	chr15	75676645	75676645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	acattagctgctcagctttcCgctgatacgttgactccagg	9	12	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	15	75676645	75676645	C	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.3155	p.R1052P	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	47	0	0	4	11	73.33	-	-	-	G	75676645	C	G	75676645	3	3	291	1	0	0	0	0	1	0	0	0	14414	652	23	3	686	3	SIN3A	15	75676645	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	22595177	75676645	26854747	120	33126										
TMC3	0	genome.wustl.edu	37	chr15	81633785	81633785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgcaggtcagcacagcccagCttctcaggtacatgagccca	10	14	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	15	81633785	81633785	C	T	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	missense	c.1790	p.S597N	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	111	0	0	45	29	39.19	-	-	-	T	81633785	C	T	81633785	3	4	291	1	0	0	0	0	1	0	0	0	16081	797	28	4	1540	4	TMC3	15	81633785	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	5957140	81633785	20897607	121	33127										
RGS11	0	genome.wustl.edu	37	chr16	324238	324238	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gtccagctctgcagccggccTcagggtacttgtccagaagt	12	13	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	324238	324238	T	G	SNP	RGS11	ENST00000168869	human	ensembl	69_37n	-1	known	missense	c.176	p.E59A	0.994	NULL	pfam_DEP_dom,pfscan_DEP_dom	-	no_errors	RGS11	HGNC	ENSG00000076344	22	0	0	7	4	36.36	-	-	-	G	324238	T	G	324238	3	3	291	1	0	0	0	0	1	0	0	0	13378	1550	54	5	1109	5	RGS11	16	324238	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09		324238	90030515	122	33128										
CCNF	0	genome.wustl.edu	37	chr16	2495537	2495537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgcctgcacctgaccgtggaGtgtgtggaccggtacctgcg	15	12	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	2495537	2495537	G	T	SNP	CCNF	ENST00000397066	human	ensembl	69_37n	1	known	missense	c.1008	p.E336D	0.982	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,pfam_F-box_dom_cyclin-like,superfamily_Cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	CCNF	HGNC	ENSG00000162063	57	0	0	26	11	29.73	-	-	-	T	2495537	G	T	2495537	3	4	291	1	0	0	0	0	1	0	0	0	2951	1020	36	4	1046	4	CCNF	16	2495537	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	2171299	2495537	87859216	123	33129										
RRN3	0	genome.wustl.edu	37	chr16	15173953	15173953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	taagttatgaacgtaacattCctaaaggagaaaatgtaaga	8	4	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	15173953	15173953	C	G	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	missense	c.667	p.E223Q	1.000	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	45	0	0	43	9	17.31	-	-	-	G	15173953	C	G	15173953	3	3	291	1	0	0	0	0	1	0	0	0	13770	869	30	2	1328	2	RRN3	16	15173953	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	12678416	15173953	75180800	124	33130										
C16orf62	0	genome.wustl.edu	37	chr16	19580756	19580756	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttcctcacaggtcacagagtCaaagacaaagaaagtgaacc	8	10	3	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	19580756	19580756	C	G	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	nonsense	c.395	p.S132*	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	36	0	0	26	13	33.33	-	-	-	G	19580756	C	G	19580756	4	3	291	1	0	0	0	0	0	1	0	0	1838	838	29	2	138	2	C16orf62	16	19580756	Nonsense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	4406803	19580756	70773997	125	33131										
ARHGAP17	0	genome.wustl.edu	37	chr16	24950727	24950727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctgctccagtatgcccgcgGaagaggggacagtcccaccc	12	16	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	24950727	24950727	G	A	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.1682	p.S561F	0.993	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	103	1	0.96	41	35	46.05	-	-	-	A	24950727	G	A	24950727	3	1	291	1	0	0	0	0	1	0	0	0	869	1174	41	2	979	2	ARHGAP17	16	24950727	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	5369971	24950727	65404026	126	33132										
C16orf54	0	genome.wustl.edu	37	chr16	29756060	29756060	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cctcctgggcgccacaccagGgtgggtgcacggtggctggg	18	13	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	16	29756060	29756060	G	A	SNP	C16orf54	ENST00000329410	human	ensembl	69_37n	-1	known	silent	c.213	p.T71	0.977	NULL	NULL	-	no_errors	C16orf54	HGNC	ENSG00000185905	50	0	0	28	20	41.67	-	-	-	A	29756060	G	A	29756060	2	1	291	1	0	0	0	0	0	0	0	1	1832	1219	43	4		4	C16orf54	16	29756060	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	4805333	29756060	60598693	127	33133										
ASPA	0	genome.wustl.edu	37	chr17	3386852	3386852	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gagcatccttccctcaaataTgcgaccactcgttccatagc	6	15	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	3386852	3386852	T	A	SNP	ASPA	ENST00000263080	human	ensembl	69_37n	1	known	nonsense	c.492	p.Y164*	0.994	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ASPA	HGNC	ENSG00000108381	212	0	0	16	103	86.55	-	-	-	A	3386852	T	A	3386852	4	1	291	1	0	0	0	0	0	1	0	0	1054	1471	51	5	502	5	ASPA	17	3386852	Nonsense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09		3386852	77808358	128	33134										
SLC16A13	0	genome.wustl.edu	37	chr17	6942180	6942181	+	Frame_Shift_Ins	INS	-	-	G													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgcagatgatagagagcatcINSggggggctgctggggcctcc							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	6942180	6942181	-	G	INS	SLC16A13	ENST00000308027	human	ensembl	69_37n	1	known	frame_shift_ins	c.1053_1054	p.L353fs	0.987:1.000	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	32	0	0	17	2	10.53	-	-	-	G	6942181	-	G	6942180	7	5	291	1	0	1	1	0	0	0	0	0	14495	874	31	0	1063	0	SLC16A13	17	6942180	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	3555328	6942180	74253030	129	33135										
TP53	0	genome.wustl.edu	37	chr17	7577610	7577610	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tggtacagtcagagccaaccTaggagataacacaggcccaa	10	11	1	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	7577610	7577610	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.673-2	e6-2	0.999	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	195	0	0	18	75	80.65	-	-	-	C	7577610	T	C	7577610	5	2	291	1	0	0	0	0	0	0	1	0	16477	1536	53	5	619	5	TP53	17	7577610	Splice_Site	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	635430	7577610	73617600	130	33136										
LIG3	0	genome.wustl.edu	37	chr17	33318105	33318105	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcgcatttttaactgcaaccCagatgatatggcacgggacc	9	11	0	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	33318105	33318105	C	G	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.1013	p.P338R	1.000	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	37	0	0	5	11	68.75	-	-	-	G	33318105	C	G	33318105	3	3	291	1	0	0	0	0	1	0	0	0	8837	594	21	4	1027	4	LIG3	17	33318105	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	25740495	33318105	47877105	131	33137										
GPR179	0	genome.wustl.edu	37	chr17	36489841	36489841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggatgaagatcagagccagcGtggtggtgactgtgctgtgg	18	6	1	4			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	36489841	36489841	G	A	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.1865	p.T622M	0.999	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	167	0	0	9	77	89.53	-	-	-	A	36489841	G	A	36489841	3	1	291	1	0	0	0	0	1	0	0	0	6724	1145	40	1	5250	1	GPR179	17	36489841	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	3171736	36489841	44705369	132	33138										
FKBP10	0	genome.wustl.edu	37	chr17	39969300	39969301	+	Frame_Shift_Ins	INS	-	-	C													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggcaccatgttccccgcgggINScccccccagccacagcctcc							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	39969300	39969301	-	C	INS	FKBP10	ENST00000321562	human	ensembl	69_37n	1	known	frame_shift_ins	c.14_15	p.S8fs	0.001:0.000	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756	11	0	0	4	2	33.33	-	-	-	C	39969301	-	C	39969300	7	5	291	1	0	1	1	0	0	0	0	0	5948	1203	42	0	16	0	FKBP10	17	39969300	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	3479459	39969300	41225910	133	33139										
NAT9	0	genome.wustl.edu	37	chr17	72768136	72768136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tctggaacatccggatgcttGgttcatttccttgcccaatt	8	11	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	72768136	72768136	G	A	SNP	NAT9	ENST00000357814	human	ensembl	69_37n	-1	known	missense	c.452	p.P151L	0.981	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	93	0	0	69	34	33.01	-	-	-	A	72768136	G	A	72768136	3	1	291	1	0	0	0	0	1	0	0	0	10254	1348	47	4	179	4	NAT9	17	72768136	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	32798836	72768136	8427074	134	33140										
TRIM65	0	genome.wustl.edu	37	chr17	73888871	73888871	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ttgcttgcgcagctctagtaGctggccttcggcctgggtgg	15	11	1	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	17	73888871	73888871	G	C	SNP	TRIM65	ENST00000269383	human	ensembl	69_37n	-1	known	missense	c.475	p.L159V	0.955	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM65	HGNC	ENSG00000141569	73	0	0	88	15	14.56	-	-	-	C	73888871	G	C	73888871	3	2	291	1	0	0	0	0	1	0	0	0	16635	962	34	4	1098	4	TRIM65	17	73888871	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	1120735	73888871	7306339	135	33141										
ENOSF1	0	genome.wustl.edu	37	chr18	694282	694282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tggcccacaagtcccacaccGcgtttaggacggccgctgtc	11	16	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	18	694282	694282	G	A	SNP	ENOSF1	ENST00000340116	human	ensembl	69_37n	-1	known	missense	c.425	p.A142V	1.000	pfam_Mandelate_racemase_N	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199	43	0	0	27	14	34.15	-	-	-	A	694282	G	A	694282	3	1	291	1	0	0	0	0	1	0	0	0	5162	1087	38	1	1021	1	ENOSF1	18	694282	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		694282	77382966	136	33142										
NDC80	0	genome.wustl.edu	37	chr18	2585112	2585112	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cttgcttgtgtactaattagAtacatactgccatgaaagaa	7	7	0	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	18	2585112	2585112	A	G	SNP	NDC80	ENST00000261597	human	ensembl	69_37n	1	known	missense	c.580	p.I194V	0.982	pfam_Kinetochore_Ndc80	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986	74	0	0	58	8	12.12	-	-	-	G	2585112	A	G	2585112	3	3	291	1	0	0	0	0	1	0	0	0	10314	347	12	5	602	5	NDC80	18	2585112	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	1890830	2585112	75492136	137	33143										
NR2F6	0	genome.wustl.edu	37	chr19	17355841	17355841	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	acaccgtaatgcttgccgctCgacttgtccccgcacaccac	7	18	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	17355841	17355841	C	G	SNP	NR2F6	ENST00000291442	human	ensembl	69_37n	-1	known	silent	c.189	p.S63	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR2F6	HGNC	ENSG00000160113	29	0	0	8	4	33.33	-	-	-	G	17355841	C	G	17355841	2	3	291	1	0	0	0	0	0	0	0	1	10702	871	31	3		3	NR2F6	19	17355841	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09		17355841	41773142	138	33144										
ZNF536	0	genome.wustl.edu	37	chr19	30935520	30935520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agttccgctgcgaggtgtgcGgtcaggtgttcagccaggcg	17	10	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	30935520	30935520	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.1051	p.G351S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	49	0	0	18	16	47.06	-	-	-	A	30935520	G	A	30935520	3	1	291	1	0	0	0	0	1	0	0	0	18070	1116	39	1	1053	1	ZNF536	19	30935520	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	13579679	30935520	28193463	139	33145										
LSR	0	genome.wustl.edu	37	chr19	35758359	35758359	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	actcgagggacttcccacgcTcccgggacccccactacgac	9	19	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	35758359	35758359	T	G	SNP	LSR	ENST00000361790	human	ensembl	69_37n	1	known	missense	c.1636	p.S546A	0.001	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	27	0	0	8	8	50	-	-	-	G	35758359	T	G	35758359	3	3	291	1	0	0	0	0	1	0	0	0	9130	1551	54	5	1670	5	LSR	19	35758359	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	4822839	35758359	23370624	140	33146										
GGN	0	genome.wustl.edu	37	chr19	38877092	38877093	+	Frame_Shift_Ins	INS	-	-	C													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agaggccgccgcctccgccgINSccccccagcgaagctttggc							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	38877092	38877093	-	C	INS	GGN	ENST00000334928	human	ensembl	69_37n	-1	known	frame_shift_ins	c.810_809	p.G271fs	0.648:0.644	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168	13	0	0	13	3	18.75	-	-	-	C	38877093	-	C	38877092	7	5	291	1	0	1	1	0	0	0	0	0	6410	1074	38	0	1156	0	GGN	19	38877092	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	3118733	38877092	20251891	141	33147										
ARHGAP35	0	genome.wustl.edu	37	chr19	47492817	47492817	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcagaccacaacctggacctGgcagagaaagactttacggt	10	11	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	47492817	47492817	G	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	silent	c.3921	p.L1307	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	72	0	0	51	13	20	-	-	-	T	47492817	G	T	47492817	2	4	291	1	0	0	0	0	0	0	0	1	6846	1335	47	4		4	ARHGAP35	19	47492817	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	8615725	47492817	11636166	142	33148										
BCL2L12	0	genome.wustl.edu	37	chr19	50169138	50169138	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cttttttgggtttccggccaGaggcatgctgggagcgtcac	14	10	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	50169138	50169138	G	T	SNP	BCL2L12	ENST00000246785	human	ensembl	69_37n	1	known	nonsense	c.58	p.E20*	0.013	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453	26	0	0	25	6	19.35	-	-	-	T	50169138	G	T	50169138	4	4	291	1	0	0	0	0	0	1	0	0	1374	943	33	2	60	2	BCL2L12	19	50169138	Nonsense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	2676321	50169138	8959845	143	33149										
ZNF544	0	genome.wustl.edu	37	chr19	58773330	58773330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gtggaactctaacctcattgTacatcagagaattcatactg	7	9	4	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	19	58773330	58773330	T	C	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.1358	p.V453A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	50	0	0	47	10	17.54	-	-	-	C	58773330	T	C	58773330	3	2	291	1	0	0	0	0	1	0	0	0	18073	1638	57	5	1372	5	ZNF544	19	58773330	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	8604192	58773330	355653	144	33150										
TMC2	0	genome.wustl.edu	37	chr20	2552868	2552868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	agtatgaaggtgccttgggaAaggggaaaggcaagcaacta	15	5	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	20	2552868	2552868	A	G	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.598	p.K200E	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	341	0	0	170	151	46.75	-	-	-	G	2552868	A	G	2552868	3	3	291	1	0	0	0	0	1	0	0	0	16080	15	1	5	616	5	TMC2	20	2552868	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09		2552868	60472652	145	33151										
RBL1	0	genome.wustl.edu	37	chr20	35696493	35696493	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aatattacagtagacacctcAaaatttctctctagcctttc	3	11	3	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	20	35696493	35696493	A	G	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	silent	c.387	p.F129	1.000	pfam_DUF3452_retinoblatoma-assoc	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	63	0	0	6	58	90.62	-	-	-	G	35696493	A	G	35696493	2	3	291	1	0	0	0	0	0	0	0	1	13192	127	5	5		5	RBL1	20	35696493	Silent	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	33143625	35696493	27329027	146	33152										
STK4	0	genome.wustl.edu	37	chr20	43703761	43703761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggcagaagtaccagtccaagCggcagcccatcctggatgcc	12	14	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	20	43703761	43703761	C	T	SNP	STK4	ENST00000372806	human	ensembl	69_37n	1	known	missense	c.1408	p.R470W	1.000	pfam_SARAH_domain,pfscan_SARAH	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK4	HGNC	ENSG00000101109	92	0	0	90	42	31.82	-	-	-	T	43703761	C	T	43703761	3	4	291	1	0	0	0	0	1	0	0	0	15397	759	27	1	1450	1	STK4	20	43703761	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	8007268	43703761	19321759	147	33153										
CDH22	0	genome.wustl.edu	37	chr20	44839113	44839113	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	atcgcctggtcgcggaacgtGcccaggtcggcgaagcgggg	18	12	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	20	44839113	44839113	G	T	SNP	CDH22	ENST00000372262	human	ensembl	69_37n	-1	known	silent	c.1119	p.G373	0.935	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	43	0	0	41	29	41.43	-	-	-	T	44839113	G	T	44839113	2	4	291	1	0	0	0	0	0	0	0	1	3136	1306	46	4		4	CDH22	20	44839113	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	1135352	44839113	18186407	148	33154										
DGCR2	0	genome.wustl.edu	37	chr22	19052399	19052399	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccaaagctccgctcgggctgGtcccattcctgggccaggac	12	16	0	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	22	19052399	19052399	G	C	SNP	DGCR2	ENST00000263196	human	ensembl	69_37n	-1	known	missense	c.510	p.D170E	0.998	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413	28	0	0	12	5	29.41	-	-	-	C	19052399	G	C	19052399	3	2	291	1	0	0	0	0	1	0	0	0	4497	1252	44	4	1170	4	DGCR2	22	19052399	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		19052399	32252167	149	33155										
MRPL40	0	genome.wustl.edu	37	chr22	19423260	19423260	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cagcaagagcgtaagatggaGagggacaccatcagggctat	14	8	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	22	19423260	19423260	G	C	SNP	MRPL40	ENST00000333130	human	ensembl	69_37n	1	known	missense	c.396	p.E132D	0.768	pfam_Ribosomal_L28/L40_mit	pfam_Ribosomal_L28/L40_mit	-	no_errors	MRPL40	HGNC	ENSG00000185608	93	0	0	46	57	55.34	-	-	-	C	19423260	G	C	19423260	3	2	291	1	0	0	0	0	1	0	0	0	9876	933	33	2	410	2	MRPL40	22	19423260	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	370861	19423260	31881306	150	33156										
MMP11	0	genome.wustl.edu	37	chr22	24124660	24124660	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gagatcgacgctgccttccaGgatgctgatggtgcgttggg	16	9	0	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	22	24124660	24124660	G	C	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	1	known	missense	c.1323	p.Q441H	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	14	0	0	10	6	37.5	-	-	-	C	24124660	G	C	24124660	3	2	291	1	0	0	0	0	1	0	0	0	9721	991	35	4	1349	4	MMP11	22	24124660	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	4701400	24124660	27179906	151	33157										
ATXN10	0	genome.wustl.edu	37	chr22	46202962	46202962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	cggggcccttagcaaaacaaGtcccttgcctcatgttcatt	8	13	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	22	46202962	46202962	G	C	SNP	ATXN10	ENST00000451241	human	ensembl	69_37n	1	putative	missense	c.395	p.S132T	0.000	NULL	pfam_Ataxin-10_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN10	HGNC	ENSG00000130638	75	0	0	27	64	70.33	-	-	-	C	46202962	G	C	46202962	3	2	291	1	0	0	0	0	1	0	0	0	1214	1044	36	4		4	ATXN10	22	46202962	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	22078302	46202962	5101604	152	33158										
CLCN4	0	genome.wustl.edu	37	chrX	10176333	10176333	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aggaggcgcaagaccaccagGctggggaagtacccggtgct	16	11	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	10176333	10176333	G	C	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	missense	c.1092	p.R364S	0.985	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	114	0	0	56	18	24.32	-	-	-	C	10176333	G	C	10176333	3	2	291	1	0	0	0	0	1	0	0	0	3495	1194	42	4	1118	4	CLCN4	23	10176333	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09		10176333	145094227	153	33159										
FRMPD4	0	genome.wustl.edu	37	chrX	12736124	12736124	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	aacggcagagatggaggaggAggccagtggtaaatttggta	17	4	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	12736124	12736124	A	G	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3179	p.E1060G	0.003	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	143	0	0	59	47	44.34	-	-	-	G	12736124	A	G	12736124	3	3	291	1	0	0	0	0	1	0	0	0	6108	304	11	5	3241	5	FRMPD4	23	12736124	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	2559791	12736124	142534436	154	33160										
CXorf22	0	genome.wustl.edu	37	chrX	35974211	35974211	+	Frame_Shift_Del	DEL	A	A	-													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tcagaaattcagtgcatcatAaaaaatcaatgcgaattact							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	35974211	35974211	A	-	DEL	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	frame_shift_del	c.1308	p.N438fs	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	130	0	0	78	45	36	-	-	-	-	35974211	A	-	35974211	7	5	291	1	0	1	0	1	0	0	0	0	4133	352	13	0	1338	0	CXorf22	23	35974211	Frame_Shift_Del	DEL	A	TCGA-AN-A0FL-01A-11W-A050-09	23238087	35974211	119296349	155	33161										
EBP	0	genome.wustl.edu	37	chrX	48382367	48382367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gactgtccctgtgctggtttGcagtgtgtgggttcattcac	13	9	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	48382367	48382367	G	T	SNP	EBP	ENST00000495186	human	ensembl	69_37n	1	known	missense	c.208	p.A70S	1.000	pfam_EBP	pfam_EBP	-	no_errors	EBP	HGNC	ENSG00000147155	423	1	0.24	200	145	41.79	-	-	-	T	48382367	G	T	48382367	3	4	291	1	0	0	0	0	1	0	0	0	4921	1319	46	4	210	4	EBP	23	48382367	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	12408156	48382367	106888193	156	33162										
PLP2	0	genome.wustl.edu	37	chrX	49028371	49028371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gcggattctgagcgcctctcGgctcctggctgctgggccgc	15	15	2	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	49028371	49028371	G	A	SNP	PLP2	ENST00000376327	human	ensembl	69_37n	1	known	silent	c.24	p.S8	0.001	NULL	pfam_MARVEL-like_dom	-	no_errors	PLP2	HGNC	ENSG00000102007	88	0	0	20	29	58	-	-	-	A	49028371	G	A	49028371	2	1	291	1	0	0	0	0	0	0	0	1	12179	1103	39	1		1	PLP2	23	49028371	Silent	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	646004	49028371	106242189	157	33163										
FAAH2	0	genome.wustl.edu	37	chrX	57337119	57337119	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ctggaaaataaatggcccttCcttggggttcctttgacagt	10	9	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	57337119	57337119	C	T	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	1	known	silent	c.369	p.F123	1.000	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591	213	0	0	86	79	47.88	-	-	-	T	57337119	C	T	57337119	2	4	291	1	0	0	0	0	0	0	0	1	5394	854	30	2		2	FAAH2	23	57337119	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	8308748	57337119	97933441	158	33164										
STARD8	0	genome.wustl.edu	37	chrX	67943519	67943520	+	Frame_Shift_Ins	INS	-	-	C													0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ggcatccacagaggtggcagINScccccccagctgtggtgctg							TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	67943519	67943520	-	C	INS	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	frame_shift_ins	c.2851_2852	p.A954fs	0.850:0.851	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	34	0	0	12	2	14.29	-	-	-	C	67943520	-	C	67943519	7	5	291	1	0	1	1	0	0	0	0	0	15354	971	34	0	2901	0	STARD8	23	67943519	Frame_Shift_Ins	INS	-	TCGA-AN-A0FL-01A-11W-A050-09	10606400	67943519	87327041	159	33165										
PJA1	0	genome.wustl.edu	37	chrX	68381469	68381469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccaggcgttcttcaagtgccAtgtaggtgaggaactgaggg	15	8	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	68381469	68381469	A	G	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.1613	p.M538T	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	48	0	0	46	17	26.98	-	-	-	G	68381469	A	G	68381469	3	3	291	1	0	0	0	0	1	0	0	0	12035	217	8	5	322	5	PJA1	23	68381469	Missense_Mutation	SNP	A	TCGA-AN-A0FL-01A-11W-A050-09	437950	68381469	86889091	160	33166										
PCDH11X	0	genome.wustl.edu	37	chrX	91133182	91133182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ctatgtaaaggctgaggatgGtggtagagtatcacgttctt	13	5	2	2			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	91133182	91133182	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.1943	p.G648V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	63	0	0	32	32	50	-	-	-	T	91133182	G	T	91133182	3	4	291	1	0	0	0	0	1	0	0	0	11581	1261	44	4	1949	4	PCDH11X	23	91133182	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	22751713	91133182	64137378	161	33167										
PCDH19	0	genome.wustl.edu	37	chrX	99662857	99662857	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	gggaggcgagttttctggcaCgctcaccgcgtaggtggact	16	10	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	99662857	99662857	C	G	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.739	p.V247L	0.995	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	72	0	0	43	31	41.89	-	-	-	G	99662857	C	G	99662857	3	3	291	1	0	0	0	0	1	0	0	0	11587	536	19	3	2731	3	PCDH19	23	99662857	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	8529675	99662857	55607703	162	33168										
DCX	0	genome.wustl.edu	37	chrX	110644539	110644539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tttttaaagaagttgtctgaGgaacagacatagctttcccc	8	8	1	3			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	110644539	110644539	G	A	SNP	DCX	ENST00000358070	human	ensembl	69_37n	-1	novel	missense	c.602	p.P201L	0.998	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DCX	HGNC	ENSG00000077279	114	0	0	49	26	34.67	-	-	-	A	110644539	G	A	110644539	3	1	291	1	0	0	0	0	1	0	0	0	4349	987	35	4	733	4	DCX	23	110644539	Missense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	10981682	110644539	44626021	163	33169										
KIAA1210	0	genome.wustl.edu	37	chrX	118220634	118220634	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	ccaggagcccctgggaagtgCttctgattttatgtcccctg	11	12	1	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	118220634	118220634	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.4559	p.S1520I	0.006	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	188	0	0	73	43	37.07	-	-	-	A	118220634	C	A	118220634	3	1	291	1	0	0	0	0	1	0	0	0	8266	797	28	4	586	4	KIAA1210	23	118220634	Missense_Mutation	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	7576095	118220634	37049926	164	33170										
XIAP	0	genome.wustl.edu	37	chrX	123040998	123040998	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtcccatgtgctacacagtCattactttcaagcaaaaaat	5	10	2	0			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	123040998	123040998	C	G	SNP	XIAP	ENST00000355640	human	ensembl	69_37n	1	known	silent	c.1461	p.V487	0.279	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	134	0	0	74	53	41.73	-	-	-	G	123040998	C	G	123040998	2	3	291	1	0	0	0	0	0	0	0	1	17525	813	29	2		2	XIAP	23	123040998	Silent	SNP	C	TCGA-AN-A0FL-01A-11W-A050-09	4820364	123040998	32229562	165	33171										
AFF2	0	genome.wustl.edu	37	chrX	148037136	148037136	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgtttctcaatctgcagcctGagccaccctcaaccaacaag	6	15	3	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	148037136	148037136	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	nonsense	c.1561	p.E521*	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	58	0	0	26	18	40.91	-	-	-	T	148037136	G	T	148037136	4	4	291	1	0	0	0	0	0	1	0	0	357	1291	45	2	1658	2	AFF2	23	148037136	Nonsense_Mutation	SNP	G	TCGA-AN-A0FL-01A-11W-A050-09	24996138	148037136	7233424	166	33172										
MPP1	0	genome.wustl.edu	37	chrX	154009963	154009963	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120481927710843	20	0.030749222087088	1.79775280898876	2.76577355229041	0.876952589750617	0.00766362175709555	0.114145658263305	9	tgccaaacatgttgccttggTagctgccaaactccaagaac	8	12	0	1			TCGA-AN-A0FL-01A-11W-A050-09	TCGA-AN-A0FL-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18ee29ae-fe36-49a3-9843-e0757c69a7dd	023ceb74-14a9-4316-8e15-cad12165baa0	X	154009963	154009963	T	C	SNP	MPP1	ENST00000369534	human	ensembl	69_37n	-1	known	missense	c.1061	p.Y354C	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP1	HGNC	ENSG00000130830	403	0	0	188	125	39.94	-	-	-	C	154009963	T	C	154009963	3	2	291	1	0	0	0	0	1	0	0	0	9805	1638	57	5	351	5	MPP1	23	154009963	Missense_Mutation	SNP	T	TCGA-AN-A0FL-01A-11W-A050-09	5972827	154009963	1260597	167	33173										
SLC2A5	0	genome.wustl.edu	37	chr1	9101751	9101751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagagaccagtctgcagaaaGtcctgtcctgtggtggtggc	14	9	1	2			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	9101751	9101751	G	A	SNP	SLC2A5	ENST00000377414	human	ensembl	69_37n	-1	known	missense	c.664	p.L222F	0.000	pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Fru_transpt_5,prints_Sugar/inositol_transpt	-	no_errors	SLC2A5	HGNC	ENSG00000142583	75	0	0	35	14	28.57	-	-	-	A	9101751	G	A	9101751	3	1	292	1	0	0	0	0	1	0	0	0	14637	1029	36	4	1037	4	SLC2A5	1	9101751	Missense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09		9101751	240148870	1	33174										
POLR3GL	0	genome.wustl.edu	37	chr1	145457994	145457994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgatatttgtctgaataaCgctccacatctgaggggtgg	11	8	3	3			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	1	145457994	145457994	C	T	SNP	POLR3GL	ENST00000369314	human	ensembl	69_37n	-1	known	missense	c.266	p.R89H	1.000	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851	115	0	0	161	20	11.05	-	-	-	T	145457994	C	T	145457994	3	4	292	1	0	0	0	0	1	0	0	0	12309	536	19	1	410	1	POLR3GL	1	145457994	Missense_Mutation	SNP	C	TCGA-AN-A0FN-01A-11W-A050-09	136356243	145457994	103792627	2	33175										
PRKCD	0	genome.wustl.edu	37	chr3	53217170	53217171	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	atccacaagaaatgcatcgaINScaagatcatcggcagatgca							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	3	53217170	53217171	-	G	INS	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	frame_shift_ins	c.605_606	p.D202fs	1.000:1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	84	0	0	41	41	50	-	-	-	G	53217171	-	G	53217170	7	5	292	1	0	1	1	0	0	0	0	0	12590	275	10	0	627	0	PRKCD	3	53217170	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09		53217170	144805260	3	33176										
LRIG1	0	genome.wustl.edu	37	chr3	66436432	66436433	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	gtgagcctggccttatgtgaINSataggtggagccaaagtggt							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	3	66436432	66436433	-	C	INS	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1762_1761	p.S587fs	1.000:1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	122	0	0	164	127	43.64	-	-	-	C	66436433	-	C	66436432	7	5	292	1	0	1	1	0	0	0	0	0	9010	246	9	0	1547	0	LRIG1	3	66436432	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09	13219262	66436432	131585998	4	33177										
HOXA9	0	genome.wustl.edu	37	chr7	27208959	27208959	+	RNA	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gtggaaggggaaagccggccGgctggcaaagcgctgcggag							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	27208959	27208959	G	-	DEL	HOXA9	ENST00000497089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HOXA9	HGNC	ENSG00000078399	21	0	0	8	2	20	-	-	-	-	27208959	G	-	27208959	6	5	292	0	1	1	0	1	0	0	0	0	7349	1131	39	0		0	HOXA9	7	27208959	RNA	DEL	G	TCGA-AN-A0FN-01A-11W-A050-09		27208959	131929704	5	33178										
ELN	0	genome.wustl.edu	37	chr7	73452051	73452051	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgcagcgctggggcctggaGgcaaacctcttaagccaggt	14	12	1	0			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	73452051	73452051	G	C	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.178	p.G60R	1.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	77	0	0	37	15	28.85	-	-	-	C	73452051	G	C	73452051	3	2	292	1	0	0	0	0	1	0	0	0	5108	1000	35	4	192	4	ELN	7	73452051	Missense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09	46243092	73452051	85686612	6	33179										
CPA2	0	genome.wustl.edu	37	chr7	129915037	129915037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctggctggatgctgggatcCatgctcgagagtgggttaca	15	8	1	1			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	129915037	129915037	C	A	SNP	CPA2	ENST00000222481	human	ensembl	69_37n	1	known	missense	c.535	p.H179N	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516	126	0	0	376	87	18.79	-	-	-	A	129915037	C	A	129915037	3	1	292	1	0	0	0	0	1	0	0	0	3820	594	21	4	557	4	CPA2	7	129915037	Missense_Mutation	SNP	C	TCGA-AN-A0FN-01A-11W-A050-09	56462986	129915037	29223626	7	33180										
BRAF	0	genome.wustl.edu	37	chr7	140439646	140439646	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtctctcatctcttttctttTtgaggcactctgccattaat	5	11	5	1			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	7	140439646	140439646	T	C	SNP	BRAF	ENST00000288602	human	ensembl	69_37n	-1	known	missense	c.2093	p.K698R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	77	0	0	81	67	45.27	-	-	-	C	140439646	T	C	140439646	3	2	292	1	0	0	0	0	1	0	0	0	1504	1841	64	5	215	5	BRAF	7	140439646	Missense_Mutation	SNP	T	TCGA-AN-A0FN-01A-11W-A050-09	10524609	140439646	18699017	8	33181										
DBC1	0	genome.wustl.edu	37	chr9	121976161	121976162	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	ctttcagacttggctcaaggINSccactcatgcagtggcactg							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	9	121976161	121976162	-	C	INS	DBC1	ENST00000373964	human	ensembl	69_37n	-1	known	frame_shift_ins	c.958_957	p.P319fs	0.001:0.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	52	0	0	52	6	10.34	-	-	-	C	121976162	-	C	121976161	7	5	292	1	0	1	1	0	0	0	0	0	4279	1218	42	0		0	DBC1	9	121976161	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09		121976161	19237270	9	33182										
PMPCA	0	genome.wustl.edu	37	chr9	139316462	139316462	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggtagtgaggggctgccgcAggcctcggccaggctcagag	19	11	1	2			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	9	139316462	139316462	A	C	SNP	PMPCA	ENST00000444897	human	ensembl	69_37n	1	known	missense	c.566	p.Q189P	0.000	NULL	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_start_codon	PMPCA	HGNC	ENSG00000165688	9	0	0	4	38	90.48	-	-	-	C	139316462	A	C	139316462	3	2	292	1	0	0	0	0	1	0	0	0	12214	203	7	5		5	PMPCA	9	139316462	Missense_Mutation	SNP	A	TCGA-AN-A0FN-01A-11W-A050-09	17340301	139316462	1896969	10	33183										
TBX10	0	genome.wustl.edu	37	chr11	67402624	67402625	+	Frame_Shift_Ins	INS	-	-	CAGG													0	0	1	0	0	0	1	1	0	gccccagtagagctggtgcaINSagggcctgatgggaatggtg							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	11	67402624	67402625	-	CAGG	INS	TBX10	ENST00000335385	human	ensembl	69_37n	-1	known	frame_shift_ins	c.118_117	p.C39fs	0.101:0.090	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800	26	0	0	47	38	44.71	-	-	-	CAGG	67402625	-	CAGG	67402624	7	5	292	1	0	1	1	0	0	0	0	0	15746	130	5	0	1067	0	TBX10	11	67402624	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09		67402624	67603892	11	33184										
FAT3	0	genome.wustl.edu	37	chr11	92532819	92532819	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gcatcaatgccaccagtccaGaaggccaaggcatcatatat							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	11	92532819	92532819	G	-	DEL	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_del	c.6640	p.E2214fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	37	0	0	35	28	41.79	-	-	-	-	92532819	G	-	92532819	7	5	292	1	0	1	0	1	0	0	0	0	5737	943	33	0	6674	0	FAT3	11	92532819	Frame_Shift_Del	DEL	G	TCGA-AN-A0FN-01A-11W-A050-09	25130195	92532819	42473697	12	33185										
SORL1	0	genome.wustl.edu	37	chr11	121466411	121466411	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaatgccaccaaccgaagacGtgtattcccaactggaagcg	10	12	0	1			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	11	121466411	121466411	G	T	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.4449	p.T1483	0.996	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	64	0	0	31	4	11.43	-	-	-	T	121466411	G	T	121466411	2	4	292	1	0	0	0	0	0	0	0	1	15023	1132	40	3		3	SORL1	11	121466411	Silent	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09	28933592	121466411	13540105	13	33186										
FGF9	0	genome.wustl.edu	37	chr13	22255226	22255226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agtgggcctggtcagcattcGaggcgtggacagtggactct	16	9	2	0			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	13	22255226	22255226	G	A	SNP	FGF9	ENST00000382353	human	ensembl	69_37n	1	known	missense	c.323	p.R108Q	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF9	HGNC	ENSG00000102678	225	0	0	186	25	11.85	-	-	-	A	22255226	G	A	22255226	3	1	292	1	0	0	0	0	1	0	0	0	5905	1058	37	1	329	1	FGF9	13	22255226	Missense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09		22255226	92914652	14	33187										
MTUS2	0	genome.wustl.edu	37	chr13	29599116	29599117	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	tctcaggctggctctgccagINScctgaaagattttagacttt							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	13	29599116	29599117	-	C	INS	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	frame_shift_ins	c.311_312	p.L105fs	0.478:0.460	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	108	0	0	18	2	10	-	-	-	C	29599117	-	C	29599116	7	5	292	1	0	1	1	0	0	0	0	0	10038	971	34	0	313	0	MTUS2	13	29599116	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09	7343890	29599116	85570762	15	33188										
PLEKHH1	0	genome.wustl.edu	37	chr14	68038517	68038517	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	ttatggacgagtcctctgggTctgacgatgactgcagctct							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	14	68038517	68038517	T	-	DEL	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	frame_shift_del	c.1483	p.S495fs	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	95	0	0	41	22	33.85	-	-	-	-	68038517	T	-	68038517	7	5	292	1	0	1	0	1	0	0	0	0	12150	1667	58	0	1517	0	PLEKHH1	14	68038517	Frame_Shift_Del	DEL	T	TCGA-AN-A0FN-01A-11W-A050-09		68038517	39311023	16	33189										
C14orf45	0	genome.wustl.edu	37	chr14	74489668	74489669	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	ggacagagccaaggccaatgINScctccctttgggaggccagg							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	14	74489668	74489669	-	C	INS	C14orf45	ENST00000394009	human	ensembl	69_37n	1	known	frame_shift_ins	c.106_107	p.S37fs	1.000:0.987	NULL	NULL	-	no_errors	C14orf45	HGNC	ENSG00000119636	58	0	0	21	3	12.5	-	-	-	C	74489669	-	C	74489668	7	5	292	1	0	1	1	0	0	0	0	0	1787	1319	46	0	112	0	C14orf45	14	74489668	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09	6451151	74489668	32859872	17	33190										
ESRP2	0	genome.wustl.edu	37	chr16	68266395	68266395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgggcgttgaggcagagtGctacaccacccctgtggagc	14	13	0	2			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	16	68266395	68266395	G	T	SNP	ESRP2	ENST00000565858	human	ensembl	69_37n	-1	known	missense	c.863	p.A288E	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	80	0	0	63	9	12.5	-	-	-	T	68266395	G	T	68266395	3	4	292	1	0	0	0	0	1	0	0	0	5296	1319	46	4	1352	4	ESRP2	16	68266395	Missense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09		68266395	22088358	18	33191										
MYH13	0	genome.wustl.edu	37	chr17	10216067	10216068	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	tcctggagcctctgggccagINSttttttcctacgaaaaccag							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	17	10216067	10216068	-	T	INS	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4189_4188	p.L1396fs	1.000:0.998	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	134	0	0	61	18	22.78	-	-	-	T	10216068	-	T	10216067	7	5	292	1	0	1	1	0	0	0	0	0	10104	1020	36	0	1671	0	MYH13	17	10216067	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09		10216067	70979143	19	33192										
TNRC6C	0	genome.wustl.edu	37	chr17	76079237	76079237	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	gatgttgaaccagctctatcAgctgcagctggtgagtggat							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	17	76079237	76079237	A	-	DEL	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	frame_shift_del	c.3458	p.Q1153fs	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	49	0	0	23	66	73.33	-	-	-	-	76079237	A	-	76079237	7	5	292	1	0	1	0	1	0	0	0	0	16437	188	7	0	3501	0	TNRC6C	17	76079237	Frame_Shift_Del	DEL	A	TCGA-AN-A0FN-01A-11W-A050-09	65863170	76079237	5115973	20	33193										
ZNF791	0	genome.wustl.edu	37	chr19	12739046	12739046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccagttctattcgagtacacGaaagaactcacactggagag	9	10	2	2			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	19	12739046	12739046	G	A	SNP	ZNF791	ENST00000343325	human	ensembl	69_37n	1	known	missense	c.703	p.E235K	0.476	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	65	0	0	33	9	21.43	-	-	-	A	12739046	G	A	12739046	3	1	292	1	0	0	0	0	1	0	0	0	18256	1059	37	1	717	1	ZNF791	19	12739046	Missense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09		12739046	46389937	21	33194										
ANKRD27	0	genome.wustl.edu	37	chr19	33131213	33131214	+	Frame_Shift_Del	DEL	CA	CA	-													0	0	1	0	0	0	1	1	0	atcttaaaagaaaatgttacCaattagggatctccgttttc							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	19	33131213	33131214	CA	-	DEL	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	frame_shift_del	c.983_982	p.W328fs	1.000:1.000	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	55	0	0	17	9	34.62	-	-	-	-	33131214	CA	-	33131213	7	5	292	1	0	1	0	1	0	0	0	0	655	608	21	0	2245	0	ANKRD27	19	33131213	Frame_Shift_Del	DEL	CA	TCGA-AN-A0FN-01A-11W-A050-09	20392167	33131213	25997770	22	33195										
LRRN4	0	genome.wustl.edu	37	chr20	6025283	6025283	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggttgatcgataggacctGggaggaatccagggtccaag	16	7	0	1			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	20	6025283	6025283	G	A	SNP	LRRN4	ENST00000378858	human	ensembl	69_37n	-1	known	nonsense	c.904	p.Q302*	0.919	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872	222	1	0.45	53	115	68.45	-	-	-	A	6025283	G	A	6025283	4	1	292	1	0	0	0	0	0	1	0	0	9103	1357	47	4	1326	4	LRRN4	20	6025283	Nonsense_Mutation	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09		6025283	57000237	23	33196										
RALGAPA2	0	genome.wustl.edu	37	chr20	20517353	20517353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tacttctggcactgactgcaGtaaaggaatctcctggtagg	11	9	2	1			TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	20	20517353	20517353	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	silent	c.3361	p.L1121	0.836	superfamily_ARM-type_fold	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	148	0	0	74	26	26	-	-	-	A	20517353	G	A	20517353	2	1	292	1	0	0	0	0	0	0	0	1	13097	1020	36	4		4	RALGAPA2	20	20517353	Silent	SNP	G	TCGA-AN-A0FN-01A-11W-A050-09	14492070	20517353	42508167	24	33197										
KLHL34	0	genome.wustl.edu	37	chrX	21674481	21674481	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	cttgccccccgagatgtacaCaacaccgcggtccccgacgg							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	X	21674481	21674481	C	-	DEL	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	frame_shift_del	c.1426	p.V476fs	0.031	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	28	0	0	4	2	33.33	-	-	-	-	21674481	C	-	21674481	7	5	292	1	0	1	0	1	0	0	0	0	8440	478	17	0	512	0	KLHL34	23	21674481	Frame_Shift_Del	DEL	C	TCGA-AN-A0FN-01A-11W-A050-09		21674481	133596079	25	33198										
PPP1R3F	0	genome.wustl.edu	37	chrX	49126982	49126983	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	acaggagcaggagatcccatINScctggatccggggctcggcc							TCGA-AN-A0FN-01A-11W-A050-09	TCGA-AN-A0FN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f583981-b257-43ee-9c9e-71a192a49d38	cab9af86-5f00-4d36-8d62-424add7d7492	X	49126982	49126983	-	G	INS	PPP1R3F	ENST00000055335	human	ensembl	69_37n	1	known	frame_shift_ins	c.650_651	p.I217fs	1.000:0.999	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769	20	0	0	7	6	46.15	-	-	-	G	49126983	-	G	49126982	7	5	292	1	0	1	1	0	0	0	0	0	12452	1435	50	0	652	0	PPP1R3F	23	49126982	Frame_Shift_Ins	INS	-	TCGA-AN-A0FN-01A-11W-A050-09	27452501	49126982	106143578	26	33199										
KCNA3	0	genome.wustl.edu	37	chr1	111216103	111216104	+	Frame_Shift_Ins	INS	-	-	AA													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tatcgccgtaacccactgttINSgtcatggttaccactgccca							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	1	111216103	111216104	-	AA	INS	KCNA3	ENST00000369769	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1329_1328	p.T444fs	0.746:1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272	81	0	0	24	14	36.84	-	-	-	AA	111216104	-	AA	111216103	7	5	293	1	0	1	1	0	0	0	0	0	8058	1799	63	0	402	0	KCNA3	1	111216103	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09		111216103	138034518	1	33200										
MAN1A2	0	genome.wustl.edu	37	chr1	117910860	117910860	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gtaggataccacctctgaacCtggggccgccttccttccca	9	16	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	1	117910860	117910860	C	T	SNP	MAN1A2	ENST00000356554	human	ensembl	69_37n	1	known	silent	c.55	p.L19	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162	68	0	0	57	33	36.67	-	-	-	T	117910860	C	T	117910860	2	4	293	1	0	0	0	0	0	0	0	1	9282	680	24	4		4	MAN1A2	1	117910860	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	6694757	117910860	131339761	2	33201										
SLC27A3	0	genome.wustl.edu	37	chr1	153747748	153747748	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cgtaggctgtggggggagggCtgggagtccggggccgcccc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	1	153747748	153747748	C	-	DEL	SLC27A3	ENST00000271857	human	ensembl	69_37n	1	novel	frame_shift_del	c.159	p.W54fs	0.808	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554	8	0	0	7	4	36.36	-	-	-	-	153747748	C	-	153747748	7	5	293	1	0	1	0	1	0	0	0	0	14616	812	28	0		0	SLC27A3	1	153747748	Frame_Shift_Del	DEL	C	TCGA-AN-A0FS-01A-11W-A050-09	35836888	153747748	95502873	3	33202										
LPGAT1	0	genome.wustl.edu	37	chr1	211956599	211956600	+	Frame_Shift_Ins	INS	-	-	CT													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tagcatctcctcctgctggaINScttccatttttctgttgtgc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	1	211956599	211956600	-	CT	INS	LPGAT1	ENST00000366996	human	ensembl	69_37n	-1	known	frame_shift_ins	c.699_698	p.S233fs	1.000:1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPGAT1	HGNC	ENSG00000123684	90	0	0	52	59	53.15	-	-	-	CT	211956600	-	CT	211956599	7	5	293	1	0	1	1	0	0	0	0	0	8980	272	10	0	429	0	LPGAT1	1	211956599	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	58208851	211956599	37294022	4	33203										
MPHOSPH10	0	genome.wustl.edu	37	chr2	71360269	71360269	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tcagtcttctcccagagagtGaagaacaggaacgtgaagag	12	8	3	5			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	2	71360269	71360269	G	A	SNP	MPHOSPH10	ENST00000244230	human	ensembl	69_37n	1	known	missense	c.331	p.E111K	0.206	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383	113	0	0	66	8	10.81	-	-	-	A	71360269	G	A	71360269	3	1	293	1	0	0	0	0	1	0	0	0	9797	1291	45	2	337	2	MPHOSPH10	2	71360269	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		71360269	171839104	5	33204										
GPR155	0	genome.wustl.edu	37	chr2	175335282	175335282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gcacagaagtggcagcaccaGactgaagaaaaaagaaaaac	10	8	0	5			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	2	175335282	175335282	G	C	SNP	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	missense	c.862	p.L288V	1.000	pfam_Auxin_eff	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328	78	0	0	41	7	14.58	-	-	-	C	175335282	G	C	175335282	3	2	293	1	0	0	0	0	1	0	0	0	6710	956	33	2	1802	2	GPR155	2	175335282	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	103975013	175335282	67864091	6	33205										
IRS1	0	genome.wustl.edu	37	chr2	227661200	227661200	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tgtgctgggggtcctcagggCcgtagtagcagtcggagggg							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	2	227661200	227661200	C	-	DEL	IRS1	ENST00000305123	human	ensembl	69_37n	-1	known	frame_shift_del	c.2255	p.G752fs	0.406	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	34	0	0	8	2	20	-	-	-	-	227661200	C	-	227661200	7	5	293	1	0	1	0	1	0	0	0	0	7894	739	26	0	1477	0	IRS1	2	227661200	Frame_Shift_Del	DEL	C	TCGA-AN-A0FS-01A-11W-A050-09	52325918	227661200	15538173	7	33206										
HDAC4	0	genome.wustl.edu	37	chr2	240011772	240011772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccacagccaggcgggctgccCccgccgagtgcacctcgttc	12	19	0	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	2	240011772	240011772	C	T	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	missense	c.2306	p.G769E	0.998	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	35	0	0	50	32	39.02	-	-	-	T	240011772	C	T	240011772	3	4	293	1	0	0	0	0	1	0	0	0	7060	623	22	4	988	4	HDAC4	2	240011772	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	12350572	240011772	3187601	8	33207										
EPHA3	0	genome.wustl.edu	37	chr3	89391074	89391074	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gagccatgcagcccaaatgtCcgcttcctccctcgacagtt	8	16	0	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	3	89391074	89391074	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	silent	c.1140	p.V380	0.709	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	139	0	0	84	25	22.94	-	-	-	T	89391074	C	T	89391074	2	4	293	1	0	0	0	0	0	0	0	1	5205	842	30	2		2	EPHA3	3	89391074	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09		89391074	108631356	9	33208										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	124	0	0	92	20	17.86	-	-	-	A	178936091	G	A	178936091	3	1	293	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	89545017	178936091	19086339	10	33209										
SLC25A31	0	genome.wustl.edu	37	chr4	128665852	128665852	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ttcagtttttggcgtggcaaTttggcaaatgttattcggta	11	5	1	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	4	128665852	128665852	T	C	SNP	SLC25A31	ENST00000281154	human	ensembl	69_37n	1	known	silent	c.258	p.N86	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,prints_Aden_trnslctor,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A31	HGNC	ENSG00000151475	237	0	0	202	28	12.17	-	-	-	C	128665852	T	C	128665852	2	2	293	1	0	0	0	0	0	0	0	1	14584	1490	52	5		5	SLC25A31	4	128665852	Silent	SNP	T	TCGA-AN-A0FS-01A-11W-A050-09		128665852	62488424	11	33210										
CCDC127	0	genome.wustl.edu	37	chr5	216868	216868	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	agcagccaatcccagcattgGaaccaacagggcataattcc	8	13	0	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	5	216868	216868	G	T	SNP	CCDC127	ENST00000296824	human	ensembl	69_37n	-1	known	missense	c.97	p.P33T	1.000	NULL	NULL	-	no_errors	CCDC127	HGNC	ENSG00000164366	80	0	0	22	3	12	-	-	-	T	216868	G	T	216868	3	4	293	1	0	0	0	0	1	0	0	0	2788	1174	41	2	693	2	CCDC127	5	216868	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		216868	180698392	12	33211										
ODZ2	0	genome.wustl.edu	37	chr5	167631625	167631625	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tgaccagcatcttggagttaCggtaaatggcctcacaggca	11	10	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	5	167631625	167631625	C	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	nonsense	c.3823	p.R1275*	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	117	0	0	72	31	30.1	-	-	-	T	167631625	C	T	167631625	4	4	293	1	0	0	0	0	0	1	0	0	10908	550	19	1	3870	1	ODZ2	5	167631625	Nonsense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	167414757	167631625	13283635	13	33212										
FGFR4	0	genome.wustl.edu	37	chr5	176524359	176524359	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cctaccttcaagcagctggtGgaggcgctggacaaggtcct							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	5	176524359	176524359	G	-	DEL	FGFR4	ENST00000292408	human	ensembl	69_37n	1	known	frame_shift_del	c.2220	p.E741fs	0.999	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR4	HGNC	ENSG00000160867	71	0	0	15	2	11.76	-	-	-	-	176524359	G	-	176524359	7	5	293	1	0	1	0	1	0	0	0	0	5914	1335	47	0	2352	0	FGFR4	5	176524359	Frame_Shift_Del	DEL	G	TCGA-AN-A0FS-01A-11W-A050-09	8892734	176524359	4390901	14	33213										
VNN1	0	genome.wustl.edu	37	chr6	133004427	133004427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ttaagacaggtccggatgttGgcttcagactaaacaagcgt	11	8	1	2			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	6	133004427	133004427	G	A	SNP	VNN1	ENST00000367928	human	ensembl	69_37n	-1	known	missense	c.1394	p.P465L	0.713	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299	244	2	0.81	173	66	27.62	-	-	-	A	133004427	G	A	133004427	3	1	293	1	0	0	0	0	1	0	0	0	17279	1348	47	4	151	4	VNN1	6	133004427	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		133004427	38110640	15	33214										
SNX8	0	genome.wustl.edu	37	chr7	2297060	2297062	+	In_Frame_Del	DEL	GCT	GCT	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tcgcggttctgcgcggtggcGctcatcatctgcctcttcat							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	7	2297060	2297062	GCT	-	DEL	SNX8	ENST00000222990	human	ensembl	69_37n	-1	known	in_frame_del	c.1074_1072	p.S358in_frame_del	0.983:1.000:1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266	25	0	0	3	4	57.14	-	-	-	-	2297062	GCT	-	2297060	7	5	293	1	0	1	0	1	0	0	0	0	14997	1078	38	0	335	0	SNX8	7	2297060	In_Frame_Del	DEL	GCT	TCGA-AN-A0FS-01A-11W-A050-09		2297060	156841603	16	33215										
PCOLCE	0	genome.wustl.edu	37	chr7	100202789	100202790	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	aactggcccgagtccgattaINSccccccgggcatcagctgtt							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	7	100202789	100202790	-	C	INS	PCOLCE	ENST00000223061	human	ensembl	69_37n	1	known	frame_shift_ins	c.539_540	p.G184fs	1.000:1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Netrin_module_non-TIMP,superfamily_CUB,superfamily_TIMP-like_OB-fold,smart_CUB,smart_Netrin_module_non-TIMP,pfscan_CUB,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333	80	0	0	13	2	13.33	-	-	-	C	100202790	-	C	100202789	7	5	293	1	0	1	1	0	0	0	0	0	11667	391	14	0	553	0	PCOLCE	7	100202789	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	97905729	100202789	58935874	17	33216										
EPO	0	genome.wustl.edu	37	chr7	100320315	100320316	+	Frame_Shift_Ins	INS	-	-	G													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	caggccgtagaagtctggcaINSgggcctggccctgctgtcgg							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	7	100320315	100320316	-	G	INS	EPO	ENST00000252723	human	ensembl	69_37n	1	known	frame_shift_ins	c.275_276	p.L94fs	1.000:1.000	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,pirsf_Erythroptn,prints_Erythroptn	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,pirsf_Erythroptn,prints_Erythroptn	-	no_errors	EPO	HGNC	ENSG00000130427	42	0	0	29	5	14.71	-	-	-	G	100320316	-	G	100320315	7	5	293	1	0	1	1	0	0	0	0	0	5225	188	7	0	289	0	EPO	7	100320315	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	117526	100320315	58818348	18	33217										
CCDC136	0	genome.wustl.edu	37	chr7	128446752	128446752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tctaccataggagttactgtGccggctgcagaagctgcacc	11	12	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	7	128446752	128446752	G	A	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.1259	p.C420Y	0.798	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	22	0	0	36	12	24.49	-	-	-	A	128446752	G	A	128446752	3	1	293	1	0	0	0	0	1	0	0	0	2795	1319	46	4	1293	4	CCDC136	7	128446752	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	28126437	128446752	30691911	19	33218										
TRPV6	0	genome.wustl.edu	37	chr7	142575020	142575020	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ggttcacaacagcgatgtgcAgtgcagtctgacctggccca	12	12	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	7	142575020	142575020	A	C	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	missense	c.362	p.L121R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	162	0	0	60	26	29.89	-	-	-	C	142575020	A	C	142575020	3	2	293	1	0	0	0	0	1	0	0	0	16696	188	7	5	1863	5	TRPV6	7	142575020	Missense_Mutation	SNP	A	TCGA-AN-A0FS-01A-11W-A050-09	14128268	142575020	16563643	20	33219										
MTMR7	0	genome.wustl.edu	37	chr8	17188758	17188758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	attgtcttcattctcatagcCtttccctgcagcacgatttg	6	12	3	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	8	17188758	17188758	C	T	SNP	MTMR7	ENST00000180173	human	ensembl	69_37n	-1	known	missense	c.766	p.G256S	1.000	pfam_Myotub-related	pfam_Myotub-related,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987	170	0	0	68	52	43.33	-	-	-	T	17188758	C	T	17188758	3	4	293	1	0	0	0	0	1	0	0	0	10020	681	24	4	1248	4	MTMR7	8	17188758	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09		17188758	129175264	21	33220										
COL14A1	0	genome.wustl.edu	37	chr8	121209087	121209087	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cattgtaatcctggtcgatgGttcatggagtattggaagat	12	5	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	8	121209087	121209087	G	A	SNP	COL14A1	ENST00000523142	human	ensembl	69_37n	1	putative	nonsense	c.48	p.W16*	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon	COL14A1	HGNC	ENSG00000187955	132	1	0.75	89	27	23.08	-	-	-	A	121209087	G	A	121209087	4	1	293	1	0	0	0	0	0	1	0	0	3701	1261	44	4	512	4	COL14A1	8	121209087	Nonsense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	104020329	121209087	25154935	22	33221										
PCSK5	0	genome.wustl.edu	37	chr9	78790207	78790207	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ggaatcgaatcgaatcgaatCgaatagaatagaatagaata	9	4	0	3			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	9	78790207	78790207	C	A	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	1	known	silent	c.2062	p.R688	0.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	16	0	0	8	7	46.67	-	-	-	A	78790207	C	A	78790207	2	1	293	1	0	0	0	0	0	0	0	1	11676	899	31	3		3	PCSK5	9	78790207	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09		78790207	62423224	23	33222										
SVEP1	0	genome.wustl.edu	37	chr9	113169977	113169977	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	catcatgtcgtcttcttgctCaaaatatccctggtcatctt	5	12	6	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	9	113169977	113169977	C	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	nonsense	c.7903	p.E2635*	0.075	NULL	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	40	0	0	42	6	12.5	-	-	-	A	113169977	C	A	113169977	4	1	293	1	0	0	0	0	0	1	0	0	15511	835	29	2	2856	2	SVEP1	9	113169977	Nonsense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	34379770	113169977	28043454	24	33223										
TBC1D12	0	genome.wustl.edu	37	chr10	96291202	96291203	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ttcagatgcagaatagcaccINSaaaaaatggactcaggtaga							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	10	96291202	96291203	-	A	INS	TBC1D12	ENST00000225235	human	ensembl	69_37n	1	known	frame_shift_ins	c.2244_2245	p.W750fs	1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239	27	0	0	18	2	10	-	-	-	A	96291203	-	A	96291202	7	5	293	1	0	1	1	0	0	0	0	0	15693	581	21	0	2290	0	TBC1D12	10	96291202	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09		96291202	39243545	25	33224										
TUB	0	genome.wustl.edu	37	chr11	8118904	8118905	+	Frame_Shift_Del	DEL	AA	AA	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	aatgccgcatcactcgggacAagaaagggatggaccggggc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	8118904	8118905	AA	-	DEL	TUB	ENST00000305253	human	ensembl	69_37n	1	known	frame_shift_del	c.982_983	p.K328fs	1.000:1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	98	0	0	59	53	47.32	-	-	-	-	8118905	AA	-	8118904	7	5	293	1	0	1	0	1	0	0	0	0	16839	131	5	0	1054	0	TUB	11	8118904	Frame_Shift_Del	DEL	AA	TCGA-AN-A0FS-01A-11W-A050-09		8118904	126887612	26	33225										
SLC22A11	0	genome.wustl.edu	37	chr11	64323714	64323715	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cgccaggccccaaccaggggINSccccaccagtgccgccgctt							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	64323714	64323715	-	C	INS	SLC22A11	ENST00000301891	human	ensembl	69_37n	1	known	frame_shift_ins	c.243_244	p.H82fs	0.011:0.110	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	52	0	0	5	4	44.44	-	-	-	C	64323715	-	C	64323714	7	5	293	1	0	1	1	0	0	0	0	0	14531	1190	42	0	245	0	SLC22A11	11	64323714	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	56204810	64323714	70682802	27	33226										
TBC1D10C	0	genome.wustl.edu	37	chr11	67174406	67174406	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tcggacccctgctgtacctgCccgagtggttcctgtgcctc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	67174406	67174406	C	-	DEL	TBC1D10C	ENST00000312390	human	ensembl	69_37n	1	known	frame_shift_del	c.757	p.E254fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	45	0	0	8	2	20	-	-	-	-	67174406	C	-	67174406	7	5	293	1	0	1	0	1	0	0	0	0	15692	739	26	0	783	0	TBC1D10C	11	67174406	Frame_Shift_Del	DEL	C	TCGA-AN-A0FS-01A-11W-A050-09	2850692	67174406	67832110	28	33227										
ACY3	0	genome.wustl.edu	37	chr11	67414330	67414331	+	Frame_Shift_Ins	INS	-	-	G													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gtcatggtccacgtagcggcINSggcagccggatgtggctgcc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	67414330	67414331	-	G	INS	ACY3	ENST00000255082	human	ensembl	69_37n	-1	known	frame_shift_ins	c.185_184	p.R62fs	0.864:0.864	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ACY3	HGNC	ENSG00000132744	17	0	0	5	2	28.57	-	-	-	G	67414331	-	G	67414330	7	5	293	1	0	1	1	0	0	0	0	0	227	768	27	0	798	0	ACY3	11	67414330	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	239924	67414330	67592186	29	33228										
CD3G	0	genome.wustl.edu	37	chr11	118221279	118221279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccctacagtgtgtcagaactGcattgaactaaatgcagcca	8	11	1	2			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	118221279	118221279	G	A	SNP	CD3G	ENST00000532917	human	ensembl	69_37n	1	known	missense	c.320	p.C107Y	1.000	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654	254	0	0	155	20	11.43	-	-	-	A	118221279	G	A	118221279	3	1	293	1	0	0	0	0	1	0	0	0	3042	1319	46	4	334	4	CD3G	11	118221279	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	50806949	118221279	16785237	30	33229										
TIRAP	0	genome.wustl.edu	37	chr11	126162498	126162498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cccaagcctcagctcagtcaCgtctcccagcctgccaccca	6	21	4	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	11	126162498	126162498	C	T	SNP	TIRAP	ENST00000392678	human	ensembl	69_37n	1	known	missense	c.194	p.T65M	0.000	pirsf_Tol-interleuk_rcpt_adapt_Tirap	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	-	no_errors	TIRAP	HGNC	ENSG00000150455	175	0	0	60	72	54.55	-	-	-	T	126162498	C	T	126162498	3	4	293	1	0	0	0	0	1	0	0	0	16022	536	19	1	200	1	TIRAP	11	126162498	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	7941219	126162498	8844018	31	33230										
AMN1	0	genome.wustl.edu	37	chr12	31862280	31862280	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	catactcattattttaatcaGtctgtcttttatgttgggag	7	6	4	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	12	31862280	31862280	G	A	SNP	AMN1	ENST00000281471	human	ensembl	69_37n	-1	known	silent	c.118	p.L40	0.983	NULL	smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	AMN1	HGNC	ENSG00000151743	345	0	0	273	37	11.9	-	-	-	A	31862280	G	A	31862280	2	1	293	1	0	0	0	0	0	0	0	1	581	1020	36	4		4	AMN1	12	31862280	Silent	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		31862280	101989615	32	33231										
SDR9C7	0	genome.wustl.edu	37	chr12	57323336	57323336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cccaaagtagtagagctcacGcctgggaaagaagagttgca	12	9	1	3			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	12	57323336	57323336	G	A	SNP	SDR9C7	ENST00000293502	human	ensembl	69_37n	-1	known	missense	c.562	p.R188C	1.000	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426	140	1	0.71	81	36	30.77	-	-	-	A	57323336	G	A	57323336	3	1	293	1	0	0	0	0	1	0	0	0	14062	1101	38	1	387	1	SDR9C7	12	57323336	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	25461056	57323336	76528559	33	33232										
TBX3	0	genome.wustl.edu	37	chr12	115115457	115115458	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gttgtctatttttaactgggINSttatctattggaagagacac							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	12	115115457	115115458	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.869_868	p.T290fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	229	1	0.43	80	40	33.33	-	-	-	T	115115458	-	T	115115457	7	5	293	1	0	1	1	0	0	0	0	0	15754	1261	44	0	1378	0	TBX3	12	115115457	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	57792121	115115457	18736438	34	33233										
PIWIL1	0	genome.wustl.edu	37	chr12	130856048	130856048	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gtgtcattcgtgttcctgctCcttgccagtacgcccacaag	9	14	1	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	12	130856048	130856048	C	G	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.2491	p.P831A	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	615	0	0	208	24	10.3	-	-	-	G	130856048	C	G	130856048	3	3	293	1	0	0	0	0	1	0	0	0	12031	855	30	2	2569	2	PIWIL1	12	130856048	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	15740591	130856048	2995847	35	33234										
PROX2	0	genome.wustl.edu	37	chr14	75321979	75321979	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	aactcctgtaacgtcaagctGgcaatttccaagaagcaatc	7	11	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	14	75321979	75321979	G	A	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	silent	c.1635	p.A545	1.000	pfam_Prox1,superfamily_Homeodomain-like	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	72	0	0	61	23	27.38	-	-	-	A	75321979	G	A	75321979	2	1	293	1	0	0	0	0	0	0	0	1	12642	1335	47	4		4	PROX2	14	75321979	Silent	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		75321979	32027561	36	33235										
MAP1A	0	genome.wustl.edu	37	chr15	43820168	43820168	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cagtctggacttccctgcttCagcctttggcttctcctcat	7	15	4	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	15	43820168	43820168	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	nonsense	c.6497	p.S2166*	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	67	0	0	16	6	27.27	-	-	-	A	43820168	C	A	43820168	4	1	293	1	0	0	0	0	0	1	0	0	9298	838	29	2	6499	2	MAP1A	15	43820168	Nonsense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09		43820168	58711224	37	33236										
ADAM10	0	genome.wustl.edu	37	chr15	58974428	58974428	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	agtgtaaatatgagaggtatCataatcaagtactttatttg	8	3	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	15	58974428	58974428	C	G	SNP	ADAM10	ENST00000260408	human	ensembl	69_37n	-1	known	missense	c.292	p.D98H	1.000	pfam_Peptidase_M12B_N	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM10	HGNC	ENSG00000137845	122	0	0	53	6	10.17	-	-	-	G	58974428	C	G	58974428	3	3	293	1	0	0	0	0	1	0	0	0	234	826	29	2	2010	2	ADAM10	15	58974428	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	15154260	58974428	43556964	38	33237										
PPL	0	genome.wustl.edu	37	chr16	4935600	4935600	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cgcccttctgccgcctcagtGcctccagctcctcccgcagc							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	4935600	4935600	G	-	DEL	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	frame_shift_del	c.3056	p.A1019fs	0.703	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	31	0	0	8	4	33.33	-	-	-	-	4935600	G	-	4935600	7	5	293	1	0	1	0	1	0	0	0	0	12411	1319	46	0	2218	0	PPL	16	4935600	Frame_Shift_Del	DEL	G	TCGA-AN-A0FS-01A-11W-A050-09		4935600	85419153	39	33238	268	2								
PPL	0	genome.wustl.edu	37	chr16	4935601	4935602	+	Frame_Shift_Ins	INS	-	-	TT													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cccttctgccgcctcagtgcINSctccagctcctcccgcagct							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	4935601	4935602	-	TT	INS	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3055_3054	p.A1018fs	0.989:0.989	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	31	0	0	8	4	33.33	-	-	-	TT	4935602	-	TT	4935601	7	5	293	1	0	1	1	0	0	0	0	0	12411	739	26	0	2219	0	PPL	16	4935601	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	1	4935601	85419152	40	33239	268	2								
DNAH3	0	genome.wustl.edu	37	chr16	21145740	21145740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gatgctctcaataaagagccGttttctctccattgggtcca	8	11	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	21145740	21145740	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.922	p.R308W	0.923	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	135	1	0.74	106	57	34.97	-	-	-	A	21145740	G	A	21145740	3	1	293	1	0	0	0	0	1	0	0	0	4639	1144	40	1	11651	1	DNAH3	16	21145740	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	16210139	21145740	69209013	41	33240										
ARHGAP17	0	genome.wustl.edu	37	chr16	24971256	24971256	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	acaaagaatttgccatactcCccttctttggccataaagtt	5	11	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	24971256	24971256	C	G	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	silent	c.618	p.G206	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	349	2	0.57	163	59	26.58	-	-	-	G	24971256	C	G	24971256	2	3	293	1	0	0	0	0	0	0	0	1	869	610	22	4		4	ARHGAP17	16	24971256	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	3825516	24971256	65383497	42	33241										
CTCF	0	genome.wustl.edu	37	chr16	67645507	67645507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ctccaaagccaacaaaaattAaaaagaaaggtaaaacgagt	6	7	0	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	67645507	67645507	A	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.772	p.K258E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	92	0	0	26	20	43.48	-	-	-	G	67645507	A	G	67645507	3	3	293	1	0	0	0	0	1	0	0	0	4032	363	13	5	774	5	CTCF	16	67645507	Missense_Mutation	SNP	A	TCGA-AN-A0FS-01A-11W-A050-09	42674251	67645507	22709246	43	33242										
CNTNAP4	0	genome.wustl.edu	37	chr16	76350228	76350228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	agtttttgatgttgttgtttTacttgttggttgttttgtct	10	2	1	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	16	76350228	76350228	T	C	SNP	CNTNAP4	ENST00000476707	human	ensembl	69_37n	1	putative	missense	c.13	p.Y5H	0.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	69	0	0	18	19	51.35	-	-	-	C	76350228	T	C	76350228	3	2	293	1	0	0	0	0	1	0	0	0	3679	1769	61	5		5	CNTNAP4	16	76350228	Missense_Mutation	SNP	T	TCGA-AN-A0FS-01A-11W-A050-09	8704721	76350228	14004525	44	33243										
GAS7	0	genome.wustl.edu	37	chr17	9837520	9837520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ggtgaacttctgcttcgtccGccaggctcttcttcacctgg	10	14	4	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	9837520	9837520	G	A	SNP	GAS7	ENST00000432992	human	ensembl	69_37n	-1	known	missense	c.848	p.A283V	0.798	pfam_FCH,smart_FCH,pfscan_FCH	pfam_FCH,pfam_WW_Rsp5_WWP,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_FCH,pfscan_FCH,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP	-	no_errors	GAS7	HGNC	ENSG00000007237	210	0	0	78	37	31.9	-	-	-	A	9837520	G	A	9837520	3	1	293	1	0	0	0	0	1	0	0	0	6300	1087	38	1	606	1	GAS7	17	9837520	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		9837520	71357690	45	33244										
MYH13	0	genome.wustl.edu	37	chr17	10233721	10233721	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	cacctcctctccatcatcttCttgaactccacccgcatcag	3	19	5	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	10233721	10233721	C	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	silent	c.2418	p.K806	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	136	0	0	121	21	14.79	-	-	-	T	10233721	C	T	10233721	2	4	293	1	0	0	0	0	0	0	0	1	10104	912	32	2		2	MYH13	17	10233721	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	396201	10233721	70961489	46	33245										
CCL11	0	genome.wustl.edu	37	chr17	32614626	32614626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tcaagaccaaactggccaagGatatctgtgccgaccccaag	9	13	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	32614626	32614626	G	A	SNP	CCL11	ENST00000305869	human	ensembl	69_37n	1	known	missense	c.211	p.D71N	0.001	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL11	HGNC	ENSG00000172156	156	1	0.64	101	17	14.41	-	-	-	A	32614626	G	A	32614626	3	1	293	1	0	0	0	0	1	0	0	0	2910	1174	41	2	221	2	CCL11	17	32614626	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	22380905	32614626	48580584	47	33246										
KRTAP4-3	0	genome.wustl.edu	37	chr17	39324182	39324182	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ctggagatacagcaggaaggCctgcagcaactggaaatgca	13	9	0	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	39324182	39324182	C	T	SNP	KRTAP4-3	ENST00000391356	human	ensembl	69_37n	-1	known	silent	c.243	p.R81	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-3	HGNC	ENSG00000196156	123	0	0	48	10	17.24	-	-	-	T	39324182	C	T	39324182	2	4	293	1	0	0	0	0	0	0	0	1	8606	738	26	4		4	KRTAP4-3	17	39324182	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	6709556	39324182	41871028	48	33247										
KRTAP4-3	0	genome.wustl.edu	37	chr17	39324272	39324272	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ctggagatacagcaggaaggCctgcagcaactggaaatgca	13	9	0	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	39324272	39324272	C	T	SNP	KRTAP4-3	ENST00000391356	human	ensembl	69_37n	-1	known	silent	c.153	p.R51	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-3	HGNC	ENSG00000196156	134	0	0	75	11	12.5	-	-	-	T	39324272	C	T	39324272	2	4	293	1	0	0	0	0	0	0	0	1	8606	738	26	4		4	KRTAP4-3	17	39324272	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	90	39324272	41870938	49	33248										
CACNA1G	0	genome.wustl.edu	37	chr17	48646555	48646555	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gacttcatctttgccttcttTgccgtggagatggtggtgaa	12	8	3	2			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	17	48646555	48646555	T	C	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	silent	c.384	p.F128	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	401	0	0	224	47	17.28	-	-	-	C	48646555	T	C	48646555	2	2	293	1	0	0	0	0	0	0	0	1	2569	1809	63	5		5	CACNA1G	17	48646555	Silent	SNP	T	TCGA-AN-A0FS-01A-11W-A050-09	9322283	48646555	32548655	50	33249										
HMHA1	0	genome.wustl.edu	37	chr19	1081038	1081039	+	Frame_Shift_Ins	INS	-	-	CGGC													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gagtgcaacagctacgtctaINScttccagggtgctgagtgtg							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	19	1081038	1081039	-	CGGC	INS	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	frame_shift_ins	c.2165_2166	p.F723fs	1.000:1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	12	0	0	3	5	62.5	-	-	-	CGGC	1081039	-	CGGC	1081038	7	5	293	1	0	1	1	0	0	0	0	0	7291	391	14	0	2231	0	HMHA1	19	1081038	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09		1081038	58047945	51	33250										
DNMT1	0	genome.wustl.edu	37	chr19	10290875	10290875	+	Frame_Shift_Del	DEL	T	T	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gcacatacctctaatcccagTtacttgggaggctgaggcag							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	19	10290875	10290875	T	-	DEL	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	frame_shift_del	c.481	p.T161fs	0.022	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	8	0	0	10	33	76.74	-	-	-	-	10290875	T	-	10290875	7	5	293	1	0	1	0	1	0	0	0	0	4710	1725	60	0	4565	0	DNMT1	19	10290875	Frame_Shift_Del	DEL	T	TCGA-AN-A0FS-01A-11W-A050-09	9209837	10290875	48838108	52	33251	269	2								
DNMT1	0	genome.wustl.edu	37	chr19	10290878	10290879	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	atacctctaatcccagttacINSttgggaggctgaggcaggag							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	19	10290878	10290879	-	T	INS	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	frame_shift_ins	c.478_477	p.V159fs	0.010:0.007	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	10	0	0	9	34	79.07	-	-	-	T	10290879	-	T	10290878	7	5	293	1	0	1	1	0	0	0	0	0	4710	565	20	0	4568	0	DNMT1	19	10290878	Frame_Shift_Ins	INS	-	TCGA-AN-A0FS-01A-11W-A050-09	3	10290878	48838105	53	33252	269	2								
KRI1	0	genome.wustl.edu	37	chr19	10670359	10670359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccttacggcgcacggaggacGcgatgctgcgtgggtaggtc	17	11	0	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	19	10670359	10670359	G	A	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	missense	c.971	p.A324V	0.039	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	156	1	0.64	52	156	74.29	-	-	-	A	10670359	G	A	10670359	3	1	293	1	0	0	0	0	1	0	0	0	8497	1087	38	1	1194	1	KRI1	19	10670359	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09	379481	10670359	48458624	54	33253										
NACC1	0	genome.wustl.edu	37	chr19	13246395	13246395	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gttcttcctcaaggtgagctCcccgagctgcgactcccagg							TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	19	13246395	13246395	C	-	DEL	NACC1	ENST00000292431	human	ensembl	69_37n	1	known	frame_shift_del	c.374	p.P126fs	1.000	NULL	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877	27	0	0	4	2	33.33	-	-	-	-	13246395	C	-	13246395	7	5	293	1	0	1	0	1	0	0	0	0	10207	855	30	0	376	0	NACC1	19	13246395	Frame_Shift_Del	DEL	C	TCGA-AN-A0FS-01A-11W-A050-09	2576036	13246395	45882588	55	33254										
ENTPD6	0	genome.wustl.edu	37	chr20	25196322	25196322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tctcttgcaggcgtttcggcGtggatcaccatcaacttcct	9	13	3	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	20	25196322	25196322	G	A	SNP	ENTPD6	ENST00000433417	human	ensembl	69_37n	1	known	missense	c.446	p.R149H	0.027	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ENTPD6	HGNC	ENSG00000197586	82	0	0	27	15	35.71	-	-	-	A	25196322	G	A	25196322	3	1	293	1	0	0	0	0	1	0	0	0	5180	1132	40	1	713	1	ENTPD6	20	25196322	Missense_Mutation	SNP	G	TCGA-AN-A0FS-01A-11W-A050-09		25196322	37829198	56	33255										
NINL	0	genome.wustl.edu	37	chr20	25477324	25477324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	tttcttctccgtgagctgctCcagggtggagtggcagtcgt	14	10	2	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	20	25477324	25477324	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.1285	p.E429K	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	93	0	0	25	11	30.56	-	-	-	T	25477324	C	T	25477324	3	4	293	1	0	0	0	0	1	0	0	0	10492	864	30	2	2923	2	NINL	20	25477324	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	281002	25477324	37548196	57	33256										
KLHL22	0	genome.wustl.edu	37	chr22	20800742	20800742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccactcacctggtgcacgtcCctcctgtatccggcatcgtt	8	17	1	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	22	20800742	20800742	C	T	SNP	KLHL22	ENST00000429594	human	ensembl	69_37n	-1	known	missense	c.166	p.G56R	0.875	NULL	pfam_Kelch_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KLHL22	HGNC	ENSG00000099910	189	1	0.53	89	167	64.98	-	-	-	T	20800742	C	T	20800742	3	4	293	1	0	0	0	0	1	0	0	0	8430	622	22	4	385	4	KLHL22	22	20800742	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09		20800742	30503824	58	33257										
TXLNG	0	genome.wustl.edu	37	chrX	16838307	16838307	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	gaaaagaagttttattactgAtgcaagccctaaacaccctt	6	9	0	2			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	X	16838307	16838307	A	T	SNP	TXLNG	ENST00000380122	human	ensembl	69_37n	1	known	missense	c.427	p.M143L	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNG	HGNC	ENSG00000086712	99	0	0	81	36	30.77	-	-	-	T	16838307	A	T	16838307	3	4	293	1	0	0	0	0	1	0	0	0	16886	333	12	5	437	5	TXLNG	23	16838307	Missense_Mutation	SNP	A	TCGA-AN-A0FS-01A-11W-A050-09		16838307	138432253	59	33258										
NHS	0	genome.wustl.edu	37	chrX	17744061	17744061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccccatccactgcatctccaCggctggcgtcctccttagca	7	19	1	0			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	X	17744061	17744061	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.1772	p.T591M	0.998	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	125	0	0	54	18	25	-	-	-	T	17744061	C	T	17744061	3	4	293	1	0	0	0	0	1	0	0	0	10483	536	19	1	1899	1	NHS	23	17744061	Missense_Mutation	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	905754	17744061	137526499	60	33259										
SAT1	0	genome.wustl.edu	37	chrX	23801965	23801965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	ccccttttaccactgcctggTtgcagaagtgccgaaagagc	10	13	0	2			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	X	23801965	23801965	T	C	SNP	SAT1	ENST00000379270	human	ensembl	69_37n	1	known	missense	c.167	p.V56A	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SAT1	HGNC	ENSG00000130066	139	1	0.71	61	60	49.59	-	-	-	C	23801965	T	C	23801965	3	2	293	1	0	0	0	0	1	0	0	0	13938	1725	60	5	177	5	SAT1	23	23801965	Missense_Mutation	SNP	T	TCGA-AN-A0FS-01A-11W-A050-09	6057904	23801965	131468595	61	33260										
ATP2B3	0	genome.wustl.edu	37	chrX	152822475	152822475	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	5	0.770595178800023	1.19160177975528	3.69396551724138	0.82088122605364	1	1	0	aagaaggcggacgtgggcttCgccatggtaagccacctggt	15	10	0	1			TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bb76d20-cefb-4f7a-80c2-aa2178e302a9	608d90c1-f205-43fa-a9cd-dcdf54bb927d	X	152822475	152822475	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	silent	c.2427	p.F809	0.601	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	77	0	0	13	7	35	-	-	-	T	152822475	C	T	152822475	2	4	293	1	0	0	0	0	0	0	0	1	1145	883	31	1		1	ATP2B3	23	152822475	Silent	SNP	C	TCGA-AN-A0FS-01A-11W-A050-09	129020510	152822475	2448085	62	33261										
AMPD1	0	genome.wustl.edu	37	chr1	115226821	115226821	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tatgtaagagaattgttaccTggatagaagctctcatttgc	9	6	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	115226821	115226821	T	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	silent	c.645	p.P215	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	164	0	0	74	34	31.48	-	-	-	C	115226821	T	C	115226821	2	2	294	1	0	0	0	0	0	0	0	1	585	1594	55	5		5	AMPD1	1	115226821	Silent	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09		115226821	134023800	1	33262										
BCAN	0	genome.wustl.edu	37	chr1	156622303	156622303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tcctgcagcctggtgcatcaCcacttcctgatggagagtca	10	13	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	156622303	156622303	C	T	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.1561	p.P521S	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	98	0	0	40	102	71.83	-	-	-	T	156622303	C	T	156622303	3	4	294	1	0	0	0	0	1	0	0	0	1349	507	18	4	1587	4	BCAN	1	156622303	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	41395482	156622303	92628318	2	33263										
CD5L	0	genome.wustl.edu	37	chr1	157805682	157805682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atcataaacttcttcttgctCacactgagccaatgtatctt	4	11	5	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	157805682	157805682	C	G	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	missense	c.319	p.E107Q	0.003	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	73	0	0	58	49	45.79	-	-	-	G	157805682	C	G	157805682	3	3	294	1	0	0	0	0	1	0	0	0	3056	835	29	2	740	2	CD5L	1	157805682	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	1183379	157805682	91444939	3	33264										
PLA2G4A	0	genome.wustl.edu	37	chr1	186880523	186880523	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	attgcattctgcacgtgatgTgagttggaaatttttcaagt	10	5	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	186880523	186880523	T	A	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	splice_site	c.558+2	e6+2	1.000	-	-	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	117	0	0	106	20	15.87	-	-	-	A	186880523	T	A	186880523	5	1	294	1	0	0	0	0	0	0	1	0	12075	1710	59	5	582	5	PLA2G4A	1	186880523	Splice_Site	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	29074841	186880523	62370098	4	33265										
KIF21B	0	genome.wustl.edu	37	chr1	200973933	200973933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atgccctccttggcccgctcGccagtagcccctgtccgctt	9	19	0	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	200973933	200973933	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	silent	c.861	p.G287	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	37	0	0	42	30	41.1	-	-	-	A	200973933	G	A	200973933	2	1	294	1	0	0	0	0	0	0	0	1	8341	1074	38	1		1	KIF21B	1	200973933	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	14093410	200973933	48276688	5	33266										
NFASC	0	genome.wustl.edu	37	chr1	204937936	204937937	+	Frame_Shift_Ins	INS	-	-	AT													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctctcctagcccaacaccagINSacatcgcatggtacaagaaa							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	204937936	204937937	-	AT	INS	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	frame_shift_ins	c.829_830	p.I278fs	1.000:1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	86	0	0	133	35	20.83	-	-	-	AT	204937937	-	AT	204937936	7	5	294	1	0	1	1	0	0	0	0	0	10431	942	33	0	914	0	NFASC	1	204937936	Frame_Shift_Ins	INS	-	TCGA-AN-A0FT-01A-11W-A050-09	3964003	204937936	44312685	6	33267										
USH2A	0	genome.wustl.edu	37	chr1	216251659	216251659	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atccacttgtgtaaaggcaaGactggtatttaaccggaagg	11	7	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	216251659	216251659	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.5344	p.L1782F	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	54	0	0	59	8	11.94	-	-	-	A	216251659	G	A	216251659	3	1	294	1	0	0	0	0	1	0	0	0	17133	942	33	2	10448	2	USH2A	1	216251659	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	11313723	216251659	32998962	7	33268										
OBSCN	0	genome.wustl.edu	37	chr1	228547542	228547542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cccactctccagctctgcccGgactctcggggccccagccc	9	22	3	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	228547542	228547542	G	A	SNP	OBSCN	ENST00000366709	human	ensembl	69_37n	1	known	missense	c.10306	p.G3436R	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	18	0	0	8	7	46.67	-	-	-	A	228547542	G	A	228547542	3	1	294	1	0	0	0	0	1	0	0	0	10885	1117	39	1	19267	1	OBSCN	1	228547542	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	12295883	228547542	20703079	8	33269										
KIF26B	0	genome.wustl.edu	37	chr1	245850728	245850728	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agagcagagcaggagcaggaCggaaagcccagtccgggaga	17	9	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	1	245850728	245850728	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.4443	p.D1481	0.001	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	16	0	0	25	6	19.35	-	-	-	T	245850728	C	T	245850728	2	4	294	1	0	0	0	0	0	0	0	1	8347	535	19	1		1	KIF26B	1	245850728	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	17303186	245850728	3399893	9	33270										
IWS1	0	genome.wustl.edu	37	chr2	128253598	128253598	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gcagcttcattcatcttgacGatcatggcactcacgacgtc	8	13	5	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	2	128253598	128253598	G	A	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	silent	c.1692	p.I564	0.136	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	180	0	0	126	72	36.36	-	-	-	A	128253598	G	A	128253598	2	1	294	1	0	0	0	0	0	0	0	1	7985	1048	37	1		1	IWS1	2	128253598	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		128253598	114945775	10	33271										
KIAA1715	0	genome.wustl.edu	37	chr2	176857117	176857117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttttgtaatctctgatttttTtccctaaattcttccaatgc	3	9	2	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	2	176857117	176857117	T	A	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	missense	c.99	p.E33D	0.997	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	160	0	0	84	21	20	-	-	-	A	176857117	T	A	176857117	3	1	294	1	0	0	0	0	1	0	0	0	8306	1838	64	5	1227	5	KIAA1715	2	176857117	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	48603519	176857117	66342256	11	33272										
PLEKHM3	0	genome.wustl.edu	37	chr2	208841408	208841408	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	actctgagcagtgagtcctcGttccaaagacaaagtcgtca	9	11	2	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	2	208841408	208841408	G	A	SNP	PLEKHM3	ENST00000427836	human	ensembl	69_37n	-1	known	nonsense	c.1513	p.R505*	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385	177	0	0	70	73	51.05	-	-	-	A	208841408	G	A	208841408	4	1	294	1	0	0	0	0	0	1	0	0	12156	1153	40	1	796	1	PLEKHM3	2	208841408	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	31984291	208841408	34357965	12	33273										
CTDSP1	0	genome.wustl.edu	37	chr2	219266840	219266840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cgccctccctacagcagaccCcagtccaatacctgctccct	5	21	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	2	219266840	219266840	C	T	SNP	CTDSP1	ENST00000273062	human	ensembl	69_37n	1	known	missense	c.223	p.P75S	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP1	HGNC	ENSG00000144579	45	0	0	10	7	41.18	-	-	-	T	219266840	C	T	219266840	3	4	294	1	0	0	0	0	1	0	0	0	4035	623	22	4	233	4	CTDSP1	2	219266840	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	10425432	219266840	23932533	13	33274										
KIF1A	0	genome.wustl.edu	37	chr2	241713623	241713623	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agcgtgctaagggtctcatcGtagttgatgtctgcaggact	13	8	2	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	2	241713623	241713623	G	A	SNP	KIF1A	ENST00000428768	human	ensembl	69_37n	-1	novel	nonsense	c.436	p.R146*	0.799	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF1A	HGNC	ENSG00000130294	49	0	0	12	12	50	-	-	-	A	241713623	G	A	241713623	4	1	294	1	0	0	0	0	0	1	0	0	8335	1140	40	1	4202	1	KIF1A	2	241713623	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	22446783	241713623	1485750	14	33275										
CHL1	0	genome.wustl.edu	37	chr3	430976	430976	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	aatggaccaggcctagagtaCagagtgacctggaagccaca	12	10	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	3	430976	430976	C	T	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	silent	c.2289	p.Y763	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	143	0	0	89	15	14.42	-	-	-	T	430976	C	T	430976	2	4	294	1	0	0	0	0	0	0	0	1	3378	489	17	4		4	CHL1	3	430976	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		430976	197591454	15	33276										
KCNH8	0	genome.wustl.edu	37	chr3	19575051	19575051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttacagaccagaacgagctgGagtgcacaccagccttgcct	10	13	0	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	3	19575051	19575051	G	A	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	nonsense	c.2784	p.W928*	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	185	0	0	141	20	12.35	-	-	-	A	19575051	G	A	19575051	4	1	294	1	0	0	0	0	0	1	0	0	8092	1183	41	2	2846	2	KCNH8	3	19575051	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	19144075	19575051	178447379	16	33277										
PLCH1	0	genome.wustl.edu	37	chr3	155303908	155303908	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttaacattcagtttatgcatCagctgatgtatctcttcaat	5	8	4	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	3	155303908	155303908	C	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	silent	c.510	p.L170	0.999	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	108	0	0	43	25	36.76	-	-	-	A	155303908	C	A	155303908	2	1	294	1	0	0	0	0	0	0	0	1	12111	813	29	2		2	PLCH1	3	155303908	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	135728857	155303908	42718522	17	33278										
TTC14	0	genome.wustl.edu	37	chr3	180322642	180322642	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgtttgtatttttttaaggaGaagtgttgagctaaatagca	10	2	0	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	3	180322642	180322642	G	A	SNP	TTC14	ENST00000296015	human	ensembl	69_37n	1	known	missense	c.704	p.R235K	1.000	NULL	pfam_TPR-1,superfamily_NA-bd_OB-fold-like,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728	59	0	0	37	5	11.9	-	-	-	A	180322642	G	A	180322642	3	1	294	1	0	0	0	0	1	0	0	0	16778	942	33	2	726	2	TTC14	3	180322642	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	25018734	180322642	17699788	18	33279										
PDS5A	0	genome.wustl.edu	37	chr4	39924337	39924337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agaactcatcaaatctagcaTgtgcatttgtaccttcttat	5	9	4	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	4	39924337	39924337	T	C	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	missense	c.559	p.M187V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	117	0	0	81	28	25.69	-	-	-	C	39924337	T	C	39924337	3	2	294	1	0	0	0	0	1	0	0	0	11764	1464	51	5	3599	5	PDS5A	4	39924337	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09		39924337	151229939	19	33280										
SPARCL1	0	genome.wustl.edu	37	chr4	88414874	88414874	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctggcttgggatgaagtagtCatcacttgcactgtgcctgg	13	9	2	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	4	88414874	88414874	C	T	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	missense	c.1078	p.D360N	0.613	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	139	0	0	117	26	18.18	-	-	-	T	88414874	C	T	88414874	3	4	294	1	0	0	0	0	1	0	0	0	15087	826	29	2	948	2	SPARCL1	4	88414874	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	48490537	88414874	102739402	20	33281										
AHRR	0	genome.wustl.edu	37	chr5	428000	428000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	caggagccatgctcccgccgCggctgtcgctgttctgcatt	12	15	1	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	428000	428000	C	T	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	missense	c.853	p.R285W	0.948	NULL	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	72	0	0	24	8	25	-	-	-	T	428000	C	T	428000	3	4	294	1	0	0	0	0	1	0	0	0	417	759	27	1	887	1	AHRR	5	428000	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		428000	180487260	21	33282										
ADAMTS16	0	genome.wustl.edu	37	chr5	5186343	5186343	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	catgaaaatatcaccacctaCgtgctcacgatactcaacat	4	13	3	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	5186343	5186343	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.942	p.Y314	0.891	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	35	0	0	41	11	21.15	-	-	-	T	5186343	C	T	5186343	2	4	294	1	0	0	0	0	0	0	0	1	261	547	19	1		1	ADAMTS16	5	5186343	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	4758343	5186343	175728917	22	33283										
TSLP	0	genome.wustl.edu	37	chr5	110411704	110411704	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	aagtcacaaccaataaatgtCtggaacaagtgtcacaatta	6	8	3	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	110411704	110411704	C	A	SNP	TSLP	ENST00000344895	human	ensembl	69_37n	1	known	missense	c.412	p.L138M	0.058	NULL	NULL	-	no_errors	TSLP	HGNC	ENSG00000145777	189	0	0	66	8	10.81	-	-	-	A	110411704	C	A	110411704	3	1	294	1	0	0	0	0	1	0	0	0	16724	912	32	2	426	2	TSLP	5	110411704	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	105225361	110411704	70503556	23	33284										
KCNN2	0	genome.wustl.edu	37	chr5	113740533	113740533	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttatggataattgccgcatgGactgtccgagcttgtgaaag	12	7	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	113740533	113740533	G	A	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	1	known	nonsense	c.981	p.W327*	1.000	pfam_Ion_trans_2	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	101	0	0	99	15	13.04	-	-	-	A	113740533	G	A	113740533	4	1	294	1	0	0	0	0	0	1	0	0	8133	1183	41	2	991	2	KCNN2	5	113740533	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	3328829	113740533	67174727	24	33285										
TRPC7	0	genome.wustl.edu	37	chr5	135692897	135692897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tggactcctccagcattttcCggaccaccgggatgttgcca	10	14	0	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	135692897	135692897	C	T	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	missense	c.179	p.R60Q	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	24	0	0	21	5	19.23	-	-	-	T	135692897	C	T	135692897	3	4	294	1	0	0	0	0	1	0	0	0	16680	652	23	1	2453	1	TRPC7	5	135692897	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	21952364	135692897	45222363	25	33286										
PCDHA2	0	genome.wustl.edu	37	chr5	140176837	140176838	+	Frame_Shift_Ins	INS	-	-	C													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agggtgtgctctggggaggaINScccccccaagacggacctca							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	140176837	140176838	-	C	INS	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	frame_shift_ins	c.2288_2289	p.K766fs	0.292:0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	64	0	0	23	5	17.86	-	-	-	C	140176838	-	C	140176837	7	5	294	1	0	1	1	0	0	0	0	0	11597	275	10	0	2290	0	PCDHA2	5	140176837	Frame_Shift_Ins	INS	-	TCGA-AN-A0FT-01A-11W-A050-09	4483940	140176837	40738423	26	33287										
PCDHA9	0	genome.wustl.edu	37	chr5	140228577	140228577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgcagatatcggggagaacgCcctgctcacttacagactga	11	11	1	4			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	140228577	140228577	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.497	p.A166V	0.980	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	34	0	0	27	4	12.9	-	-	-	T	140228577	C	T	140228577	3	4	294	1	0	0	0	0	1	0	0	0	11604	739	26	4	499	4	PCDHA9	5	140228577	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	51740	140228577	40686683	27	33288										
NHP2	0	genome.wustl.edu	37	chr5	177576773	177576773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctcatcgtaagcctcctggtActcctcatggggcttgacca	9	14	2	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	5	177576773	177576773	A	G	SNP	NHP2	ENST00000274606	human	ensembl	69_37n	-1	known	missense	c.403	p.Y135H	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7Ae/L8/Nhp2,prints_H/ACA_rnp_Nhp2_euk	-	no_errors	NHP2	HGNC	ENSG00000145912	61	0	0	35	4	10.26	-	-	-	G	177576773	A	G	177576773	3	3	294	1	0	0	0	0	1	0	0	0	10481	391	14	5	62	5	NHP2	5	177576773	Missense_Mutation	SNP	A	TCGA-AN-A0FT-01A-11W-A050-09	37348196	177576773	3338487	28	33289										
NEDD9	0	genome.wustl.edu	37	chr6	11188468	11188468	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tacctgatgatgttccagctGcatcttgttctgtttcatga	8	9	3	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	6	11188468	11188468	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	nonsense	c.1978	p.Q660*	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	310	1	0.32	228	33	12.64	-	-	-	A	11188468	G	A	11188468	4	1	294	1	0	0	0	0	0	1	0	0	10385	1328	46	4	534	4	NEDD9	6	11188468	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		11188468	159926599	29	33290										
ELOVL5	0	genome.wustl.edu	37	chr6	53139934	53139934	+	Frame_Shift_Del	DEL	C	C	-													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	acaaaccaccagatgttcagCatcgaggcatggtggtagac							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	6	53139934	53139934	C	-	DEL	ELOVL5	ENST00000541407	human	ensembl	69_37n	-1	known	frame_shift_del	c.531	p.M177fs	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660	140	0	0	79	25	23.15	-	-	-	-	53139934	C	-	53139934	7	5	294	1	0	1	0	1	0	0	0	0	5114	710	25	0	465	0	ELOVL5	6	53139934	Frame_Shift_Del	DEL	C	TCGA-AN-A0FT-01A-11W-A050-09	41951466	53139934	117975133	30	33291										
HEY2	0	genome.wustl.edu	37	chr6	126080572	126080572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gtcaaccccttgtcgcctctCcacaacttcagaagtgcctc	6	17	3	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	6	126080572	126080572	C	T	SNP	HEY2	ENST00000368364	human	ensembl	69_37n	1	known	missense	c.638	p.S213F	0.910	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd,prints_Antifreeze_1	-	no_errors	HEY2	HGNC	ENSG00000135547	34	0	0	24	8	25	-	-	-	T	126080572	C	T	126080572	3	4	294	1	0	0	0	0	1	0	0	0	7130	855	30	2	656	2	HEY2	6	126080572	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	72940638	126080572	45034495	31	33292										
ACTB	0	genome.wustl.edu	37	chr7	5568037	5568037	+	Frame_Shift_Del	DEL	T	T	-													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tggaagcagccgtggccatcTcttgctcgaagtccagggcg							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	7	5568037	5568037	T	-	DEL	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	frame_shift_del	c.677	p.E226fs	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	28	0	0	38	24	38.1	-	-	-	-	5568037	T	-	5568037	7	5	294	1	0	1	0	1	0	0	0	0	193	1551	54	0	462	0	ACTB	7	5568037	Frame_Shift_Del	DEL	T	TCGA-AN-A0FT-01A-11W-A050-09		5568037	153570626	32	33293										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97984400	97984400	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gtggcaatctcaccgatcttGgccactccatcgtagtaggc	10	13	2	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	7	97984400	97984400	G	C	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	silent	c.168	p.A56	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	122	0	0	56	13	18.84	-	-	-	C	97984400	G	C	97984400	2	2	294	1	0	0	0	0	0	0	0	1	1306	1335	47	4		4	BAIAP2L1	7	97984400	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	92416363	97984400	61154263	33	33294										
AGFG2	0	genome.wustl.edu	37	chr7	100151824	100151824	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgctggctgacatcggtggaGacccctttgctgcaccccag	12	14	0	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	7	100151824	100151824	G	A	SNP	AGFG2	ENST00000300176	human	ensembl	69_37n	1	known	missense	c.694	p.D232N	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351	144	0	0	38	40	51.28	-	-	-	A	100151824	G	A	100151824	3	1	294	1	0	0	0	0	1	0	0	0	381	942	33	2	712	2	AGFG2	7	100151824	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	2167424	100151824	58986839	34	33295										
GIMAP8	0	genome.wustl.edu	37	chr7	150171135	150171135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agctgcagtccacaggacccGagcagaatccggggacatca	12	13	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	7	150171135	150171135	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.718	p.E240K	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	133	0	0	79	23	22.55	-	-	-	A	150171135	G	A	150171135	3	1	294	1	0	0	0	0	1	0	0	0	6437	1059	37	1	728	1	GIMAP8	7	150171135	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	50019311	150171135	8967528	35	33296										
DPP6	0	genome.wustl.edu	37	chr7	154172083	154172083	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tagaagatctcttcagtgaaGacttcaaaattcatgacccc	6	10	4	5			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	7	154172083	154172083	G	T	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.418	p.D140Y	0.988	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	149	0	0	49	18	26.87	-	-	-	T	154172083	G	T	154172083	3	4	294	1	0	0	0	0	1	0	0	0	4765	942	33	2	544	2	DPP6	7	154172083	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	4000948	154172083	4966580	36	33297										
XKR5	0	genome.wustl.edu	37	chr8	6668898	6668898	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ccttttgggctccagcggctCctctagctctgagatactga	10	13	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	8	6668898	6668898	C	T	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	124	0	0	50	13	20.63	-	-	-	T	6668898	C	T	6668898	1	4	294	0	1	0	0	0	0	0	0	0	17531	864	30	2		2	XKR5	8	6668898	RNA	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		6668898	139695124	37	33298										
MOS	0	genome.wustl.edu	37	chr8	57026280	57026280	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cttggtgcacttgttcacttGctttatggccacaggaacac	9	11	1	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	8	57026280	57026280	G	A	SNP	MOS	ENST00000311923	human	ensembl	69_37n	-1	known	nonsense	c.262	p.Q88*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MOS	HGNC	ENSG00000172680	50	0	0	56	8	12.5	-	-	-	A	57026280	G	A	57026280	4	1	294	1	0	0	0	0	0	1	0	0	9784	1328	46	4	781	4	MOS	8	57026280	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	50357382	57026280	89337742	38	33299										
ZFHX4	0	genome.wustl.edu	37	chr8	77616630	77616630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tggaacaccactgccctaatGcccgccttcctgtcctgaag	8	16	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	8	77616630	77616630	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.307	p.A103T	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	201	0	0	200	46	18.62	-	-	-	A	77616630	G	A	77616630	3	1	294	1	0	0	0	0	1	0	0	0	17731	1319	46	4	309	4	ZFHX4	8	77616630	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	20590350	77616630	68747392	39	33300										
ATP6V0D2	0	genome.wustl.edu	37	chr8	87165053	87165053	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttctttcctcaggtacaaatGaatgtgctggcattcaacag	8	9	3	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	8	87165053	87165053	G	C	SNP	ATP6V0D2	ENST00000285393	human	ensembl	69_37n	1	known	missense	c.900	p.M300I	1.000	pfam_ATPase_V0/A0-cplx_csu/dsu,superfamily_ATPase_V0/A0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0/A0-cplx_csu/dsu,superfamily_ATPase_V0/A0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	164	0	0	133	81	37.85	-	-	-	C	87165053	G	C	87165053	3	2	294	1	0	0	0	0	1	0	0	0	1178	1290	45	2	930	2	ATP6V0D2	8	87165053	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	9548423	87165053	59198969	40	33301										
UBR5	0	genome.wustl.edu	37	chr8	103298762	103298762	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctcctgttctatgtcgtcacTctgactactactgctatcag	6	13	4	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	8	103298762	103298762	T	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.5041	p.S1681C	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	195	0	0	102	292	74.11	-	-	-	A	103298762	T	A	103298762	3	1	294	1	0	0	0	0	1	0	0	0	17002	1551	54	5	3446	5	UBR5	8	103298762	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	16133709	103298762	43065260	41	33302										
DDX58	0	genome.wustl.edu	37	chr9	32481365	32481365	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgtgaagtgtataaaaacagGgctttacaaatcctgctctc	8	8	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	9	32481365	32481365	G	C	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	silent	c.1611	p.A537	0.003	NULL	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	180	0	0	145	49	25.26	-	-	-	C	32481365	G	C	32481365	2	2	294	1	0	0	0	0	0	0	0	1	4406	1219	43	4		4	DDX58	9	32481365	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		32481365	108732066	42	33303			1	59		2	2	31	G		8.62457e-05
DDX58	0	genome.wustl.edu	37	chr9	32481395	32481395	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atcctgctctcttcatctttGtctggcatctggaacaccat	6	13	5	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	9	32481395	32481395	G	A	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	silent	c.1581	p.D527	1.000	NULL	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	223	0	0	96	149	60.82	-	-	-	A	32481395	G	A	32481395	2	1	294	1	0	0	0	0	0	0	0	1	4406	1368	48	4		4	DDX58	9	32481395	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	30	32481395	108732036	43	33304			1	59		2	2	31	G		8.62457e-05
C9orf91	0	genome.wustl.edu	37	chr9	117405515	117405516	+	Frame_Shift_Ins	INS	-	-	C													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ggacacgacacacgaactctINSccgagaattccatgcccctg							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	9	117405515	117405516	-	C	INS	C9orf91	ENST00000374049	human	ensembl	69_37n	1	known	frame_shift_ins	c.954_955	p.R319fs	0.004:0.001	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	147	0	0	69	20	22.47	-	-	-	C	117405516	-	C	117405515	7	5	294	1	0	1	1	0	0	0	0	0	2530	1538	54	0	981	0	C9orf91	9	117405515	Frame_Shift_Ins	INS	-	TCGA-AN-A0FT-01A-11W-A050-09	84924120	117405515	23807916	44	33305										
EXOC6	0	genome.wustl.edu	37	chr10	94688180	94688181	+	Splice_Site	INS	-	-	T													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gcaaccccagtcgaatatggINStaagtatgcgatattttgaa							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	10	94688180	94688181	-	T	INS	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	splice_site_ins	c.1020+1_1020+1	e10+1	1.000:1.000	-	-	-	no_errors	EXOC6	HGNC	ENSG00000138190	159	0	0	129	52	28.73	-	-	-	T	94688181	-	T	94688180	8	5	294	1	0	1	1	0	0	0	1	0	5344	1275	44	0	1097	0	EXOC6	10	94688180	Splice_Site	INS	-	TCGA-AN-A0FT-01A-11W-A050-09		94688180	40846567	45	33306										
CNNM2	0	genome.wustl.edu	37	chr10	104816684	104816684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cgaatactacctctaccagcGcaacaagccagtagactact	6	14	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	10	104816684	104816684	G	A	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	missense	c.2039	p.R680H	1.000	superfamily_cNMP-bd-like	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	171	0	0	87	12	12.12	-	-	-	A	104816684	G	A	104816684	3	1	294	1	0	0	0	0	1	0	0	0	3643	1087	38	1	2092	1	CNNM2	10	104816684	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	10128504	104816684	30718063	46	33307										
SORCS1	0	genome.wustl.edu	37	chr10	108339234	108339234	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gtgaggtccaccaggggggcTtgtgggggaaacagagcaga	19	7	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	10	108339234	108339234	T	G	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	splice_site	c.3266-2	e25-2	0.998	-	-	-	no_errors	SORCS1	HGNC	ENSG00000108018	214	0	0	144	49	25.39	-	-	-	G	108339234	T	G	108339234	5	3	294	1	0	0	0	0	0	0	1	0	15019	1623	56	5	484	5	SORCS1	10	108339234	Splice_Site	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	3522550	108339234	27195513	47	33308										
TRAF6	0	genome.wustl.edu	37	chr11	36511852	36511852	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	aatcacaacaggtttctcctCttcttgacatttcaaatgca	4	11	5	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	36511852	36511852	C	T	SNP	TRAF6	ENST00000348124	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369K	1.000	superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104	307	0	0	172	54	23.89	-	-	-	T	36511852	C	T	36511852	3	4	294	1	0	0	0	0	1	0	0	0	16541	922	32	2	467	2	TRAF6	11	36511852	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		36511852	98494664	48	33309										
SMTNL1	0	genome.wustl.edu	37	chr11	57308982	57308982	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgtcataatctacccccatgCtcccgggggcagttggagag	12	12	2	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	57308982	57308982	C	A	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	missense	c.4	p.L2I	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	83	0	0	50	11	18.03	-	-	-	A	57308982	C	A	57308982	3	1	294	1	0	0	0	0	1	0	0	0	14904	797	28	4	6	4	SMTNL1	11	57308982	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	20797130	57308982	77697534	49	33310										
GANAB	0	genome.wustl.edu	37	chr11	62396294	62396294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tataagagggtgtaccagaaGggcagcaaagaatatcgctg	13	6	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	62396294	62396294	G	A	SNP	GANAB	ENST00000531841	human	ensembl	69_37n	-1	known	missense	c.184	p.L62F	0.997	NULL	NULL	-	no_errors	GANAB	HGNC	ENSG00000089597	125	0	0	19	70	78.65	-	-	-	A	62396294	G	A	62396294	3	1	294	1	0	0	0	0	1	0	0	0	6283	987	35	4	739	4	GANAB	11	62396294	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	5087312	62396294	72610222	50	33311										
ANO1	0	genome.wustl.edu	37	chr11	69957859	69957859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gtgtacgcggctgcatacccActgcacgatgtaagtaacct	10	12	0	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	69957859	69957859	A	G	SNP	ANO1	ENST00000530480	human	ensembl	69_37n	1	novel	missense	c.440	p.H147R	0.015	NULL	pfam_Anoctamin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANO1	HGNC	ENSG00000131620	117	0	0	70	11	13.58	-	-	-	G	69957859	A	G	69957859	3	3	294	1	0	0	0	0	1	0	0	0	694	146	6	5	872	5	ANO1	11	69957859	Missense_Mutation	SNP	A	TCGA-AN-A0FT-01A-11W-A050-09	7561565	69957859	65048657	51	33312										
SYTL2	0	genome.wustl.edu	37	chr11	85431982	85431982	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttccaaagttttcaaaacagGactgggttcttcttctgaac	7	9	4	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	85431982	85431982	G	C	SNP	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	missense	c.4018	p.P1340A	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	100	0	0	33	6	15.38	-	-	-	C	85431982	G	C	85431982	3	2	294	1	0	0	0	0	1	0	0	0	15575	1174	41	2	1420	2	SYTL2	11	85431982	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	15474123	85431982	49574534	52	33313										
CBL	0	genome.wustl.edu	37	chr11	119103359	119103359	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctaagcaaaccataagcctcTtcaaggagggaaaagaaaga	9	8	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	11	119103359	119103359	T	C	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	missense	c.397	p.F133L	1.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	113	0	0	56	15	21.13	-	-	-	C	119103359	T	C	119103359	3	2	294	1	0	0	0	0	1	0	0	0	2725	1609	56	5	403	5	CBL	11	119103359	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	33671377	119103359	15903157	53	33314										
CD9	0	genome.wustl.edu	37	chr12	6344725	6344725	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gacgtactcgaaaccttcacCgtgaaggtaaactcagacca	8	12	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	6344725	6344725	C	G	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	silent	c.531	p.T177	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	190	0	0	96	82	45.81	-	-	-	G	6344725	C	G	6344725	2	3	294	1	0	0	0	0	0	0	0	1	3075	639	23	3		3	CD9	12	6344725	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		6344725	127507170	54	33315										
MRPL51	0	genome.wustl.edu	37	chr12	6602122	6602122	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gggagagtgagccttataccGatcaatctaggcacacctgg	12	10	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	6602122	6602122	G	T	SNP	MRPL51	ENST00000229238	human	ensembl	69_37n	-1	known	silent	c.96	p.I32	0.000	NULL	pfam_Ribosomal_L51_mit	-	no_errors	MRPL51	HGNC	ENSG00000111639	108	0	0	104	18	14.75	-	-	-	T	6602122	G	T	6602122	2	4	294	1	0	0	0	0	0	0	0	1	9887	1048	37	3		3	MRPL51	12	6602122	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	257397	6602122	127249773	55	33316										
NR4A1	0	genome.wustl.edu	37	chr12	52448565	52448565	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agcttccagccgccccagctCtctccctgggatggctcctt	9	18	1	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	52448565	52448565	C	G	SNP	NR4A1	ENST00000545748	human	ensembl	69_37n	1	known	silent	c.615	p.L205	0.987	prints_Nuc_orph_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	58	0	0	37	18	32.73	-	-	-	G	52448565	C	G	52448565	2	3	294	1	0	0	0	0	0	0	0	1	10705	900	32	2		2	NR4A1	12	52448565	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	45846443	52448565	81403330	56	33317										
TIMELESS	0	genome.wustl.edu	37	chr12	56822802	56822802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctggccggaaggaggcagctCggttgaaggccatgaagaaa	16	8	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	56822802	56822802	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	missense	c.1169	p.R390Q	1.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	152	0	0	118	33	21.85	-	-	-	T	56822802	C	T	56822802	3	4	294	1	0	0	0	0	1	0	0	0	15999	884	31	1	2533	1	TIMELESS	12	56822802	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	4374237	56822802	77029093	57	33318										
LRP1	0	genome.wustl.edu	37	chr12	57595392	57595392	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gtggatggcagtgatgagccCgccaactgcagtgagttgcc	15	10	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	57595392	57595392	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.10458	p.P3486	0.001	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	50	0	0	31	6	16.22	-	-	-	T	57595392	C	T	57595392	2	4	294	1	0	0	0	0	0	0	0	1	9017	639	23	1		1	LRP1	12	57595392	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	772590	57595392	76256503	58	33319										
PHLDA1	0	genome.wustl.edu	37	chr12	76424354	76424354	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gctgcggagaagccggtgccCgtgcggctgcgagtgcggct	19	12	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	12	76424354	76424354	C	G	SNP	PHLDA1	ENST00000266671	human	ensembl	69_37n	-1	known	missense	c.1168	p.G390R	1.000	NULL	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289	504	1	0.2	220	64	22.46	-	-	-	G	76424354	C	G	76424354	3	3	294	1	0	0	0	0	1	0	0	0	11922	652	23	3	41	3	PHLDA1	12	76424354	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	18828962	76424354	57427541	59	33320										
FLT3	0	genome.wustl.edu	37	chr13	28602382	28602382	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cccagctgggtcatcatcttGagttctgacatgagtgcctc	10	12	4	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	13	28602382	28602382	G	A	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	silent	c.1986	p.L662	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	62	0	0	66	10	13.16	-	-	-	A	28602382	G	A	28602382	2	1	294	1	0	0	0	0	0	0	0	1	5988	1277	45	2		2	FLT3	13	28602382	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		28602382	86567496	60	33321										
C15orf52	0	genome.wustl.edu	37	chr15	40627724	40627724	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	aagaggagccaagtcaggctCctgtggagagcaggggactg	17	8	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	40627724	40627724	C	G	SNP	C15orf52	ENST00000559313	human	ensembl	69_37n	-1	known	missense	c.1240	p.E414Q	0.000	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549	43	0	0	19	4	17.39	-	-	-	G	40627724	C	G	40627724	3	3	294	1	0	0	0	0	1	0	0	0	1812	864	30	2	368	2	C15orf52	15	40627724	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		40627724	61903668	61	33322										
ZFP106	0	genome.wustl.edu	37	chr15	42734373	42734373	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	catgggctcttgtttaatctGaactgatgagtctggagcag	12	7	3	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	42734373	42734373	G	A	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	nonsense	c.3592	p.Q1198*	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	114	0	0	78	14	15.22	-	-	-	A	42734373	G	A	42734373	4	1	294	1	0	0	0	0	0	1	0	0	17733	1299	45	2	2111	2	ZFP106	15	42734373	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	2106649	42734373	59797019	62	33323										
LEO1	0	genome.wustl.edu	37	chr15	52244140	52244140	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctatctgcaagtgacagagtCatctttctatgtgtggcact	9	9	4	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	52244140	52244140	C	T	SNP	LEO1	ENST00000299601	human	ensembl	69_37n	-1	known	missense	c.1512	p.M504I	1.000	pfam_Leo1	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477	135	0	0	34	69	66.99	-	-	-	T	52244140	C	T	52244140	3	4	294	1	0	0	0	0	1	0	0	0	8780	826	29	2	504	2	LEO1	15	52244140	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	9509767	52244140	50287252	63	33324										
IREB2	0	genome.wustl.edu	37	chr15	78757626	78757626	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atggtggattttgctgctatGagggaggcagtgaaaactct	14	5	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	78757626	78757626	G	A	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.306	p.M102I	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	209	0	0	79	19	19.39	-	-	-	A	78757626	G	A	78757626	3	1	294	1	0	0	0	0	1	0	0	0	7880	1290	45	2	320	2	IREB2	15	78757626	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	26513486	78757626	23773766	64	33325										
ST20	0	genome.wustl.edu	37	chr15	80191306	80191306	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tatgtgttggcaatcgttttCgtaagagtcagaaaaattag	10	4	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	80191306	80191306	C	A	SNP	ST20	ENST00000478497	human	ensembl	69_37n	-1	known	silent	c.207	p.T69	0.000	NULL	NULL	-	no_errors	ST20	HGNC	ENSG00000180953	106	0	0	47	17	26.15	-	-	-	A	80191306	C	A	80191306	2	1	294	1	0	0	0	0	0	0	0	1	15304	871	31	3		3	ST20	15	80191306	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	1433680	80191306	22340086	65	33326										
BNC1	0	genome.wustl.edu	37	chr15	83926275	83926275	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctgtttcgactgcgaacagaCgaaaacatggtgttgcagcc	11	10	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	15	83926275	83926275	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	silent	c.2904	p.S968	0.308	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	115	0	0	49	28	36.36	-	-	-	T	83926275	C	T	83926275	2	4	294	1	0	0	0	0	0	0	0	1	1479	523	19	1		1	BNC1	15	83926275	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	3734969	83926275	18605117	66	33327										
CRAMP1L	0	genome.wustl.edu	37	chr16	1724028	1724028	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ggtggaggcggccccgctgtCagtgacctgtcccagtgacc	15	14	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	16	1724028	1724028	C	G	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	silent	c.3792	p.V1264	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	33	0	0	11	18	62.07	-	-	-	G	1724028	C	G	1724028	2	3	294	1	0	0	0	0	0	0	0	1	3876	813	29	2		2	CRAMP1L	16	1724028	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		1724028	88630725	67	33328										
SULT1A4	0	genome.wustl.edu	37	chr16	29472811	29472811	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gggcccctgcagagcttccaAgcccgacctgatgacctgct	11	16	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	11	0	0	5	3	37.5	-	-	-	G	29472811	A	G	29472811	2	3	294	1	0	0	0	0	0	0	0	1	15466	69	3	5		5	SULT1A4	16	29472811	Silent	SNP	A	TCGA-AN-A0FT-01A-11W-A050-09	27748783	29472811	60881942	68	33329										
IRX3	0	genome.wustl.edu	37	chr16	54319414	54319414	+	Frame_Shift_Del	DEL	C	C	-													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gttcttgggacgggacgggtCcccgaactggtactggccat							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	16	54319414	54319414	C	-	DEL	IRX3	ENST00000329734	human	ensembl	69_37n	-1	known	frame_shift_del	c.379	p.D127fs	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX3	HGNC	ENSG00000177508	160	0	0	62	59	48.76	-	-	-	-	54319414	C	-	54319414	7	5	294	1	0	1	0	1	0	0	0	0	7899	855	30	0	1138	0	IRX3	16	54319414	Frame_Shift_Del	DEL	C	TCGA-AN-A0FT-01A-11W-A050-09	24846603	54319414	36035339	69	33330										
ABR	0	genome.wustl.edu	37	chr17	953786	953786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctgccactcacctcatcccaCttgggctccgctgtgtcccg	8	19	2	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	17	953786	953786	C	A	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.1650	p.K550N	0.996	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	76	0	0	47	25	34.72	-	-	-	A	953786	C	A	953786	3	1	294	1	0	0	0	0	1	0	0	0	99	564	20	4	965	4	ABR	17	953786	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		953786	80241424	70	33331										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	385	1	0.26	66	260	79.75	-	-	-	C	7578271	T	C	7578271	3	2	294	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	6624485	7578271	73616939	71	33332										
DHRS13	0	genome.wustl.edu	37	chr17	27228017	27228017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ccagacctcacctgggtgggCtgcatagcaggtgacgccag	14	13	1	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	17	27228017	27228017	C	A	SNP	DHRS13	ENST00000378895	human	ensembl	69_37n	-1	known	missense	c.673	p.A225S	0.998	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	85	0	0	356	96	21.24	-	-	-	A	27228017	C	A	27228017	3	1	294	1	0	0	0	0	1	0	0	0	4525	797	28	4	468	4	DHRS13	17	27228017	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	19649746	27228017	53967193	72	33333										
SSTR2	0	genome.wustl.edu	37	chr17	71165918	71165918	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ccatcaagtcggccaagtggAggagaccccggacggccaag	14	13	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	17	71165918	71165918	A	G	SNP	SSTR2	ENST00000357585	human	ensembl	69_37n	1	known	missense	c.460	p.R154G	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Opioid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_2,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_5	-	no_errors	SSTR2	HGNC	ENSG00000180616	111	0	0	12	23	65.71	-	-	-	G	71165918	A	G	71165918	3	3	294	1	0	0	0	0	1	0	0	0	15289	295	11	5	462	5	SSTR2	17	71165918	Missense_Mutation	SNP	A	TCGA-AN-A0FT-01A-11W-A050-09	43937901	71165918	10029292	73	33334										
COLEC12	0	genome.wustl.edu	37	chr18	357409	357409	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agcatgcttacctttatatcCcaaaatggctactgtgattg	7	9	0	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	18	357409	357409	C	A	SNP	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	nonsense	c.172	p.G58*	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	191	0	0	186	32	14.68	-	-	-	A	357409	C	A	357409	4	1	294	1	0	0	0	0	0	1	0	0	3742	632	22	4	2088	4	COLEC12	18	357409	Nonsense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		357409	77719839	74	33335										
TLE6	0	genome.wustl.edu	37	chr19	2994071	2994071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ccttggcgtctacagcatgcCggcggggacaaaagtgttcg	14	11	1	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	2994071	2994071	C	T	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	missense	c.1592	p.P531L	0.109	superfamily_WD40_repeat_dom,prints_Groucho_enhance	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	66	0	0	16	33	66	-	-	-	T	2994071	C	T	2994071	3	4	294	1	0	0	0	0	1	0	0	0	16037	652	23	1	1650	1	TLE6	19	2994071	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		2994071	56134912	75	33336										
PTPRS	0	genome.wustl.edu	37	chr19	5212055	5212055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ggatgtaggcatagaggctgCgtgcgggcacttctgtgttg	17	7	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	5212055	5212055	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	69_37n	-1	known	missense	c.4979	p.R1660H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like	-	no_errors	PTPRS	HGNC	ENSG00000105426	34	0	0	19	6	24	-	-	-	T	5212055	C	T	5212055	3	4	294	1	0	0	0	0	1	0	0	0	12894	768	27	1	898	1	PTPRS	19	5212055	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	2217984	5212055	53916928	76	33337										
KANK3	0	genome.wustl.edu	37	chr19	8399296	8399296	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctcttcttcatgatggatttGaggatgcctggcggggatga	14	7	3	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	8399296	8399296	G	C	SNP	KANK3	ENST00000330915	human	ensembl	69_37n	-1	known	silent	c.1335	p.L445	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	41	0	0	15	8	34.78	-	-	-	C	8399296	G	C	8399296	2	2	294	1	0	0	0	0	0	0	0	1	8032	1277	45	2		2	KANK3	19	8399296	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	3187241	8399296	50729687	77	33338										
OR10H2	0	genome.wustl.edu	37	chr19	15838899	15838899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tgtctgaattcatcctcgtcGgcttctctgccttcccccac	6	17	3	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	15838899	15838899	G	A	SNP	OR10H2	ENST00000305899	human	ensembl	69_37n	1	known	missense	c.46	p.G16S	0.326	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942	557	0	0	582	153	20.82	-	-	-	A	15838899	G	A	15838899	3	1	294	1	0	0	0	0	1	0	0	0	10979	1116	39	1	48	1	OR10H2	19	15838899	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	7439603	15838899	43290084	78	33339										
ZNF85	0	genome.wustl.edu	37	chr19	21131734	21131734	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	aatggacttaaccaatgtctCacagctacccagagcaaaat	6	11	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	21131734	21131734	C	G	SNP	ZNF85	ENST00000328178	human	ensembl	69_37n	1	known	silent	c.414	p.L138	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750	47	0	0	21	7	25	-	-	-	G	21131734	C	G	21131734	2	3	294	1	0	0	0	0	0	0	0	1	18286	813	29	2		2	ZNF85	19	21131734	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	5292835	21131734	37997249	79	33340										
CYP2S1	0	genome.wustl.edu	37	chr19	41704619	41704619	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cccttctccccacagacctaCgagatgttctcctggttcct	6	17	2	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	41704619	41704619	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	silent	c.660	p.Y220	0.025	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	389	0	0	249	103	29.26	-	-	-	T	41704619	C	T	41704619	2	4	294	1	0	0	0	0	0	0	0	1	4205	547	19	1		1	CYP2S1	19	41704619	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	20572885	41704619	17424364	80	33341										
ZNF324	0	genome.wustl.edu	37	chr19	58980577	58980577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cctttgaggatgtggctgtgTacttctcccaggaggagtgg	15	8	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	19	58980577	58980577	T	C	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	missense	c.25	p.Y9H	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	86	0	0	30	7	18.92	-	-	-	C	58980577	T	C	58980577	3	2	294	1	0	0	0	0	1	0	0	0	17940	1638	57	5	27	5	ZNF324	19	58980577	Missense_Mutation	SNP	T	TCGA-AN-A0FT-01A-11W-A050-09	17275958	58980577	148406	81	33342										
RIN2	0	genome.wustl.edu	37	chr20	19945639	19945639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atcagtttcgcagatttattCcggctcattgctttctactg	7	10	3	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	20	19945639	19945639	C	G	SNP	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	missense	c.654	p.F218L	1.000	pfscan_SH2	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	257	0	0	105	127	54.74	-	-	-	G	19945639	C	G	19945639	3	3	294	1	0	0	0	0	1	0	0	0	13458	854	30	2	525	2	RIN2	20	19945639	Missense_Mutation	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09		19945639	43079881	82	33343										
ERG	0	genome.wustl.edu	37	chr21	39817365	39817365	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ctagggttacattccattttGatggtgaccctggctggggg	14	8	0	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	21	39817365	39817365	G	A	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	silent	c.219	p.I73	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	109	0	0	124	33	20.89	-	-	-	A	39817365	G	A	39817365	2	1	294	1	0	0	0	0	0	0	0	1	5259	1280	45	2		2	ERG	21	39817365	Silent	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		39817365	8312530	83	33344										
KRTAP10-2	0	genome.wustl.edu	37	chr21	45970680	45970680	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	agggtctgcagcaggaggagGtgcagcaagctggctggcag	19	8	1	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	21	45970680	45970680	G	C	SNP	KRTAP10-2	ENST00000391621	human	ensembl	69_37n	-1	known	missense	c.662	p.T221S	0.015	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445	95	0	0	92	15	14.02	-	-	-	C	45970680	G	C	45970680	3	2	294	1	0	0	0	0	1	0	0	0	8562	1261	44	4	109	4	KRTAP10-2	21	45970680	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	6153315	45970680	2159215	84	33345										
KRTAP10-7	0	genome.wustl.edu	37	chr21	46020575	46020575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	gacctgagctacggcagccgCgtctgccttcctggttcctg	12	15	1	1			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	21	46020575	46020575	C	T	SNP	KRTAP10-7	ENST00000380102	human	ensembl	69_37n	1	known	silent	c.54	p.R18	0.001	NULL	NULL	-	no_errors	KRTAP10-7	HGNC	ENSG00000205441	154	0	0	109	64	36.78	-	-	-	T	46020575	C	T	46020575	2	4	294	1	0	0	0	0	0	0	0	1	8567	755	27	1		1	KRTAP10-7	21	46020575	Silent	SNP	C	TCGA-AN-A0FT-01A-11W-A050-09	49895	46020575	2109320	85	33346										
BCR	0	genome.wustl.edu	37	chr22	23524047	23524047	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	ggcccgctcctgcgcagccaGagcacctctgagcaggagaa	13	15	1	3			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	22	23524047	23524047	G	C	SNP	BCR	ENST00000305877	human	ensembl	69_37n	1	known	missense	c.900	p.Q300H	1.000	NULL	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	22	0	0	2	10	83.33	-	-	-	C	23524047	G	C	23524047	3	2	294	1	0	0	0	0	1	0	0	0	1392	933	33	2	902	2	BCR	22	23524047	Missense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09		23524047	27780519	86	33347										
SHROOM2	0	genome.wustl.edu	37	chrX	9864432	9864433	+	Frame_Shift_Ins	INS	-	-	C													0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	cgagagacaagccagagaggINSccgcggacagcgggccgcac							TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	X	9864432	9864433	-	C	INS	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	frame_shift_ins	c.2484_2485	p.R829fs	0.001:0.020	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	31	0	0	15	4	21.05	-	-	-	C	9864433	-	C	9864432	7	5	294	1	0	1	1	0	0	0	0	0	14383	1194	42	0	2498	0	SHROOM2	23	9864432	Frame_Shift_Ins	INS	-	TCGA-AN-A0FT-01A-11W-A050-09		9864432	145406128	87	33348										
DMD	0	genome.wustl.edu	37	chrX	32364092	32364092	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	atgttttgtctgtaacagctGctgttttatctttatttcct	6	7	2	0			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	X	32364092	32364092	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	nonsense	c.5554	p.Q1852*	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	202	1	0.49	80	16	16.67	-	-	-	A	32364092	G	A	32364092	4	1	294	1	0	0	0	0	0	1	0	0	4616	1328	46	4	5815	4	DMD	23	32364092	Nonsense_Mutation	SNP	G	TCGA-AN-A0FT-01A-11W-A050-09	22499660	32364092	122906468	88	33349										
VGLL1	0	genome.wustl.edu	37	chrX	135630756	135630756	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.191011235955056	17	0.0210839952325468	1.97816091954023	3.14954248366013	1.56953944368445	0.523107089291739	1	8	tttccttctcagatgatagcAtgtctccaaatcagtggcgt	8	10	3	2			TCGA-AN-A0FT-01A-11W-A050-09	TCGA-AN-A0FT-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0598fc5f-9651-4ace-bf4e-56759d544e52	520abbc0-ff40-4a8e-b002-c36bac79cb72	X	135630756	135630756	A	T	SNP	VGLL1	ENST00000370634	human	ensembl	69_37n	1	known	missense	c.223	p.M75L	0.043	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL1	HGNC	ENSG00000102243	128	0	0	65	22	25.29	-	-	-	T	135630756	A	T	135630756	3	4	294	1	0	0	0	0	1	0	0	0	17255	217	8	5	229	5	VGLL1	23	135630756	Missense_Mutation	SNP	A	TCGA-AN-A0FT-01A-11W-A050-09	103266664	135630756	19639804	89	33350										
MORN1	0	genome.wustl.edu	37	chr1	2303944	2303944	+	Nonsense_Mutation	SNP	G	G	A													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ggcaatttccccgtggtcctGcagcagctgaacgttcaccg							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	2303944	2303944	G	A	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	nonsense	c.721	p.Q241*	0.940	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	22	0	0	16	5	23.81	-	-	-	A	2303944	G	A	2303944	4	1	295	1	0	0	0	0	0	1	0	0	9780	1328	46	4	800	4	MORN1	1	2303944	Nonsense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		2303944	246946677	1	33351	270	2								
MORN1	0	genome.wustl.edu	37	chr1	2303945	2303945	+	Silent	SNP	C	C	A													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gcaatttccccgtggtcctgCagcagctgaacgttcaccga							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	2303945	2303945	C	A	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	silent	c.720	p.L240	0.953	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	22	0	0	17	5	22.73	-	-	-	A	2303945	C	A	2303945	2	1	295	1	0	0	0	0	0	0	0	1	9780	697	25	4		4	MORN1	1	2303945	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	1	2303945	246946676	2	33352	270	2								
GBP6	0	genome.wustl.edu	37	chr1	89850894	89850894	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	atactacaaaaaatgatgatActccctggattgcacgaacc	6	10	0	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	89850894	89850894	A	G	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	missense	c.1768	p.T590A	0.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	254	0	0	187	60	24.1	-	-	-	G	89850894	A	G	89850894	3	3	295	1	0	0	0	0	1	0	0	0	6328	391	14	5	1806	5	GBP6	1	89850894	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	87546949	89850894	159399727	3	33353										
SLC6A17	0	genome.wustl.edu	37	chr1	110738234	110738234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gctgtgtctttgcattcctcGtggggctgttgttcgtccag	13	10	1	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	110738234	110738234	G	A	SNP	SLC6A17	ENST00000331565	human	ensembl	69_37n	1	known	missense	c.1519	p.V507M	0.952	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	41	0	0	41	14	25.45	-	-	-	A	110738234	G	A	110738234	3	1	295	1	0	0	0	0	1	0	0	0	14769	1145	40	1	1553	1	SLC6A17	1	110738234	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	20887340	110738234	138512387	4	33354										
MAGI3	0	genome.wustl.edu	37	chr1	114226131	114226131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	attattagagggtaagagtcGaagaatagcaggctatacgg	13	4	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	114226131	114226131	G	A	SNP	MAGI3	ENST00000307546	human	ensembl	69_37n	1	novel	missense	c.3941	p.R1314Q	0.002	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	212	0	0	297	81	21.43	-	-	-	A	114226131	G	A	114226131	3	1	295	1	0	0	0	0	1	0	0	0	9263	1058	37	1	4077	1	MAGI3	1	114226131	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	3487897	114226131	135024490	5	33355										
KRTCAP2	0	genome.wustl.edu	37	chr1	155145340	155145340	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agcagggacaggagggaggaGagcgccagcgaggtgcccgt	20	9	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	155145340	155145340	G	C	SNP	KRTCAP2	ENST00000295682	human	ensembl	69_37n	-1	known	silent	c.111	p.L37	0.469	pfam_Uncharacterised_KRTCAP2	pfam_Uncharacterised_KRTCAP2	-	no_errors	KRTCAP2	HGNC	ENSG00000163463	47	0	0	53	14	20.9	-	-	-	C	155145340	G	C	155145340	2	2	295	1	0	0	0	0	0	0	0	1	8632	929	33	2		2	KRTCAP2	1	155145340	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	40919209	155145340	94105281	6	33356										
USP21	0	genome.wustl.edu	37	chr1	161133349	161133349	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctttgatctgtggtagtgatGatgaccgagccaacctaatg	11	8	1	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	161133349	161133349	G	T	SNP	USP21	ENST00000289865	human	ensembl	69_37n	1	known	missense	c.1054	p.D352Y	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	87	0	0	98	49	33.33	-	-	-	T	161133349	G	T	161133349	3	4	295	1	0	0	0	0	1	0	0	0	17150	1290	45	2	1076	2	USP21	1	161133349	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	5988009	161133349	88117272	7	33357										
SERPINC1	0	genome.wustl.edu	37	chr1	173881074	173881075	+	Frame_Shift_Del	DEL	AG	AG	-													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ggatttgttggcttttcgatAgagtcggcagttcagtttgg							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	173881074	173881075	AG	-	DEL	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	frame_shift_del	c.487_486	p.Y163fs	1.000:1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	158	0	0	294	62	17.42	-	-	-	-	173881075	AG	-	173881074	7	5	295	1	0	1	0	1	0	0	0	0	14197	420	15	0	927	0	SERPINC1	1	173881074	Frame_Shift_Del	DEL	AG	TCGA-AN-A0FV-01A-11W-A019-09	12747725	173881074	75369547	8	33358										
HMCN1	0	genome.wustl.edu	37	chr1	185946924	185946924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgtaatgtcttccagcacctCcagttttcatacaagaacct	5	12	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	185946924	185946924	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.2377	p.P793S	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	269	0	0	348	71	16.95	-	-	-	T	185946924	C	T	185946924	3	4	295	1	0	0	0	0	1	0	0	0	7271	855	30	2	2439	2	HMCN1	1	185946924	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	12065850	185946924	63303697	9	33359										
ZBTB41	0	genome.wustl.edu	37	chr1	197169214	197169214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgaaaaactgaatgtgttacGtgatccagggtgacaacatc	10	7	0	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	197169214	197169214	G	A	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	silent	c.390	p.H130	0.991	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	154	0	0	319	83	20.65	-	-	-	A	197169214	G	A	197169214	2	1	295	1	0	0	0	0	0	0	0	1	17639	1136	40	1		1	ZBTB41	1	197169214	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	11222290	197169214	52081407	10	33360										
LHX9	0	genome.wustl.edu	37	chr1	197889297	197889297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gcatttactgcaaggaggatTactacaggtactcccctaca	8	11	0	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	197889297	197889297	T	C	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	missense	c.370	p.Y124H	1.000	pfam_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	152	0	0	239	53	18.15	-	-	-	C	197889297	T	C	197889297	3	2	295	1	0	0	0	0	1	0	0	0	8832	1754	61	5	408	5	LHX9	1	197889297	Missense_Mutation	SNP	T	TCGA-AN-A0FV-01A-11W-A019-09	720083	197889297	51361324	11	33361										
IKBKE	0	genome.wustl.edu	37	chr1	206658371	206658371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gaacgcctgagatccaggaaCtgaaggcggctgcagaactg	14	10	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	206658371	206658371	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	silent	c.1465	p.L489	0.114	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	58	0	0	104	19	15.45	-	-	-	T	206658371	C	T	206658371	2	4	295	1	0	0	0	0	0	0	0	1	7666	564	20	4		4	IKBKE	1	206658371	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	8769074	206658371	42592250	12	33362										
CR2	0	genome.wustl.edu	37	chr1	207651345	207651345	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgtgaagatgggtatatgctGgaaggcagtccccagagcca	14	8	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	207651345	207651345	G	A	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	silent	c.3018	p.L1006	0.971	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	64	0	0	74	23	23.71	-	-	-	A	207651345	G	A	207651345	2	1	295	1	0	0	0	0	0	0	0	1	3872	1335	47	4		4	CR2	1	207651345	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	992974	207651345	41599276	13	33363										
WDR26	0	genome.wustl.edu	37	chr1	224592164	224592164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aagccaaagctcagagcagtCatctgggccacaagcaacaa	9	12	3	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	224592164	224592164	C	G	SNP	WDR26	ENST00000414423	human	ensembl	69_37n	-1	known	missense	c.1267	p.D423H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923	198	1	0.5	360	63	14.86	-	-	-	G	224592164	C	G	224592164	3	3	295	1	0	0	0	0	1	0	0	0	17380	826	29	2	746	2	WDR26	1	224592164	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	16940819	224592164	24658457	14	33364										
PGBD5	0	genome.wustl.edu	37	chr1	230492905	230492905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ccaggaacgccttcatctccGtcagcgtcacctccacccag	7	19	4	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	230492905	230492905	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.584	p.T195M	0.046	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	96	0	0	167	25	12.89	-	-	-	A	230492905	G	A	230492905	3	1	295	1	0	0	0	0	1	0	0	0	11858	1145	40	1	1104	1	PGBD5	1	230492905	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	5900741	230492905	18757716	15	33365										
RYR2	0	genome.wustl.edu	37	chr1	237870517	237870517	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctagggaacatattgaaaatCatatataataacttggggat	8	4	1	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	237870517	237870517	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.9843	p.I3281	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	85	0	0	174	32	15.53	-	-	-	A	237870517	C	A	237870517	2	1	295	1	0	0	0	0	0	0	0	1	13855	816	29	2		2	RYR2	1	237870517	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	7377612	237870517	11380104	16	33366										
RYR2	0	genome.wustl.edu	37	chr1	237924301	237924301	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gacaaaacaaagctgaaggtCttgggatggtgacagaggaa	14	5	1	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	1	237924301	237924301	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.11467	p.L3823F	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	39	0	0	57	14	19.72	-	-	-	T	237924301	C	T	237924301	3	4	295	1	0	0	0	0	1	0	0	0	13855	913	32	2	11783	2	RYR2	1	237924301	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	53784	237924301	11326320	17	33367										
C2orf44	0	genome.wustl.edu	37	chr2	24261104	24261104	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aatcaagctaatggcatactGatcagactttgaagaaggaa	9	6	2	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	2	24261104	24261104	G	A	SNP	C2orf44	ENST00000295148	human	ensembl	69_37n	-1	known	nonsense	c.1261	p.Q421*	1.000	NULL	NULL	-	no_errors	C2orf44	HGNC	ENSG00000163026	254	0	0	303	74	19.63	-	-	-	A	24261104	G	A	24261104	4	1	295	1	0	0	0	0	0	1	0	0	2188	1299	45	2	916	2	C2orf44	2	24261104	Nonsense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		24261104	218938269	18	33368										
CCDC88A	0	genome.wustl.edu	37	chr2	55563838	55563839	+	Frame_Shift_Del	DEL	CA	CA	-													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgtctctctgaattttctctCagtgtttctattgttttttc							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	2	55563838	55563839	CA	-	DEL	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	frame_shift_del	c.1635_1634	p.L545fs	0.982:1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	162	0	0	159	64	28.19	-	-	-	-	55563839	CA	-	55563838	7	5	295	1	0	1	0	1	0	0	0	0	2890	813	29	0	4056	0	CCDC88A	2	55563838	Frame_Shift_Del	DEL	CA	TCGA-AN-A0FV-01A-11W-A019-09	31302734	55563838	187635535	19	33369										
TMEM163	0	genome.wustl.edu	37	chr2	135470791	135470791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aaaggcagccaccgcgagggCcagggtgacaatgatggaga	16	9	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	2	135470791	135470791	C	G	SNP	TMEM163	ENST00000281924	human	ensembl	69_37n	-1	known	missense	c.301	p.A101P	1.000	NULL	NULL	-	no_errors	TMEM163	HGNC	ENSG00000152128	144	0	0	102	33	24.44	-	-	-	G	135470791	C	G	135470791	3	3	295	1	0	0	0	0	1	0	0	0	16173	739	26	4	596	4	TMEM163	2	135470791	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	79906953	135470791	107728582	20	33370										
PLCL1	0	genome.wustl.edu	37	chr2	198948973	198948973	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	acaccacggttcatgtggttGaaaacagtgtttgaagcagc	11	8	1	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	2	198948973	198948973	G	A	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	silent	c.732	p.L244	0.996	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	354	0	0	298	83	21.73	-	-	-	A	198948973	G	A	198948973	2	1	295	1	0	0	0	0	0	0	0	1	12113	1281	45	2		2	PLCL1	2	198948973	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	63478182	198948973	44250400	21	33371										
COL6A3	0	genome.wustl.edu	37	chr2	238275816	238275816	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	cacttggatggagtcgccatCttcataaactgtgtccacta	8	11	2	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	2	238275816	238275816	C	G	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.5014	p.D1672H	0.019	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	78	0	0	107	35	24.65	-	-	-	G	238275816	C	G	238275816	3	3	295	1	0	0	0	0	1	0	0	0	3731	913	32	2	4655	2	COL6A3	2	238275816	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	39326843	238275816	4923557	22	33372										
OXNAD1	0	genome.wustl.edu	37	chr3	16343316	16343316	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	caaacaaaagaaatggatatGagataggaacaataaaacta	7	4	0	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	3	16343316	16343316	G	A	SNP	OXNAD1	ENST00000544043	human	ensembl	69_37n	1	known	missense	c.670	p.E224K	0.002	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814	107	0	0	99	23	18.85	-	-	-	A	16343316	G	A	16343316	3	1	295	1	0	0	0	0	1	0	0	0	11406	1291	45	2	634	2	OXNAD1	3	16343316	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		16343316	181679114	23	33373										
DHX30	0	genome.wustl.edu	37	chr3	47890693	47890693	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tctccctaggactcatcaagCagttctcagagaacatttat	6	11	4	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	3	47890693	47890693	C	T	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	nonsense	c.2941	p.Q981*	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	109	0	0	133	28	17.18	-	-	-	T	47890693	C	T	47890693	4	4	295	1	0	0	0	0	0	1	0	0	4540	711	25	4	3018	4	DHX30	3	47890693	Nonsense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	31547377	47890693	150131737	24	33374										
C3orf71	0	genome.wustl.edu	37	chr3	48956003	48956003	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctccactgacgccaggatgtCttctccgtgcccgatcccgg	10	17	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	3	48956003	48956003	C	T	SNP	C3orf71	ENST00000408959	human	ensembl	69_37n	-1	known	missense	c.580	p.D194N	0.000	NULL	NULL	-	no_errors	C3orf71	HGNC	ENSG00000221883	61	0	0	34	9	20.93	-	-	-	T	48956003	C	T	48956003	3	4	295	1	0	0	0	0	1	0	0	0	2263	913	32	2	296	2	C3orf71	3	48956003	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	1065310	48956003	149066427	25	33375										
USP19	0	genome.wustl.edu	37	chr3	49148221	49148221	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gagaagcgcttgagctgcacGatgagaacatttggcaggcg	15	8	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	3	49148221	49148221	G	T	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	silent	c.3312	p.I1104	0.679	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	67	0	0	86	24	21.82	-	-	-	T	49148221	G	T	49148221	2	4	295	1	0	0	0	0	0	0	0	1	17147	1048	37	3		3	USP19	3	49148221	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	192218	49148221	148874209	26	33376										
N4BP2	0	genome.wustl.edu	37	chr4	40104561	40104561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctccaccgatgtggaatccaAtgattcctgcttttgacctc	7	13	0	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	4	40104561	40104561	A	G	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.1096	p.M366V	0.873	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	222	0	0	107	53	33.12	-	-	-	G	40104561	A	G	40104561	3	3	295	1	0	0	0	0	1	0	0	0	10182	101	4	5	1102	5	N4BP2	4	40104561	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09		40104561	151049715	27	33377										
HELT	0	genome.wustl.edu	37	chr4	185941910	185941911	+	Frame_Shift_Ins	INS	-	-	C													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aacctgcacacgccccagcaINSccccccggtgctctgacgcc							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	4	185941910	185941911	-	C	INS	HELT	ENST00000338875	human	ensembl	69_37n	1	known	frame_shift_ins	c.968_969	p.V326fs	1.000:1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HELT	HGNC	ENSG00000187821	32	0	0	24	3	11.11	-	-	-	C	185941911	-	C	185941910	7	5	295	1	0	1	1	0	0	0	0	0	7099	159	6	0	982	0	HELT	4	185941910	Frame_Shift_Ins	INS	-	TCGA-AN-A0FV-01A-11W-A019-09	145837349	185941910	5212366	28	33378										
FAT1	0	genome.wustl.edu	37	chr4	187532774	187532774	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agtggcagtcagcctccttgGcaagccttgatccacagctt	10	13	1	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	4	187532774	187532774	G	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.9619	p.P3207A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	129	0	0	132	27	16.98	-	-	-	C	187532774	G	C	187532774	3	2	295	1	0	0	0	0	1	0	0	0	5735	1203	42	4	4203	4	FAT1	4	187532774	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	1590864	187532774	3621502	29	33379										
NPR3	0	genome.wustl.edu	37	chr5	32712623	32712623	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gacttggatctggaagacatCgtgcgcaatatccaggccag	12	10	1	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	5	32712623	32712623	C	G	SNP	NPR3	ENST00000265074	human	ensembl	69_37n	1	known	missense	c.741	p.I247M	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389	149	0	0	66	22	24.72	-	-	-	G	32712623	C	G	32712623	3	3	295	1	0	0	0	0	1	0	0	0	10669	874	31	3	743	3	NPR3	5	32712623	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09		32712623	148202637	30	33380										
TNPO1	0	genome.wustl.edu	37	chr5	72144299	72144299	+	Frame_Shift_Del	DEL	A	A	-													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aggagtcccagtccccagacAccaccatccagagaaccgtg							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	5	72144299	72144299	A	-	DEL	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	frame_shift_del	c.103	p.T35fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	21	0	0	5	2	28.57	-	-	-	-	72144299	A	-	72144299	7	5	295	1	0	1	0	1	0	0	0	0	16430	159	6	0	109	0	TNPO1	5	72144299	Frame_Shift_Del	DEL	A	TCGA-AN-A0FV-01A-11W-A019-09	39431676	72144299	108770961	31	33381										
DCP2	0	genome.wustl.edu	37	chr5	112312503	112312503	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ccccttccccttctcgtctcCgttggagtcgtctctgccgc	8	19	3	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	5	112312503	112312503	C	A	SNP	DCP2	ENST00000513585	human	ensembl	69_37n	1	putative	missense	c.97	p.R33S	0.000	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DCP2	HGNC	ENSG00000172795	54	0	0	111	16	12.6	-	-	-	A	112312503	C	A	112312503	3	1	295	1	0	0	0	0	1	0	0	0	4331	667	23	3		3	DCP2	5	112312503	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	40168204	112312503	68602757	32	33382										
H2AFY	0	genome.wustl.edu	37	chr5	134705192	134705192	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ttggctgggggtggtgtgatGatggcttccaactttccttt	14	7	0	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	5	134705192	134705192	G	A	SNP	H2AFY	ENST00000511689	human	ensembl	69_37n	-1	known	silent	c.381	p.I127	1.000	pirsf_Core_histone_macro-H2A	pfam_A1pp,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp,prints_Histone_H2A	-	no_errors	H2AFY	HGNC	ENSG00000113648	203	2	0.97	135	50	27.03	-	-	-	A	134705192	G	A	134705192	2	1	295	1	0	0	0	0	0	0	0	1	6980	1280	45	2		2	H2AFY	5	134705192	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	22392689	134705192	46210068	33	33383										
ZKSCAN4	0	genome.wustl.edu	37	chr6	28213028	28213028	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gattttctgatgttcaataaGacttctattccgtgtgaaac	7	7	3	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	6	28213028	28213028	G	C	SNP	ZKSCAN4	ENST00000377294	human	ensembl	69_37n	-1	known	missense	c.1504	p.L502V	0.355	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626	268	0	0	286	92	24.34	-	-	-	C	28213028	G	C	28213028	3	2	295	1	0	0	0	0	1	0	0	0	17785	942	33	2	137	2	ZKSCAN4	6	28213028	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		28213028	142902039	34	33384										
ALDH8A1	0	genome.wustl.edu	37	chr6	135263550	135263550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	cactgaacagcactcaccgaCtcccaccggggcccgcaccg	9	20	1	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	6	135263550	135263550	C	A	SNP	ALDH8A1	ENST00000265605	human	ensembl	69_37n	-1	known	missense	c.439	p.V147F	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514	67	0	0	42	11	20.75	-	-	-	A	135263550	C	A	135263550	3	1	295	1	0	0	0	0	1	0	0	0	505	565	20	4	1044	4	ALDH8A1	6	135263550	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	107050522	135263550	35851517	35	33385										
LMTK2	0	genome.wustl.edu	37	chr7	97821026	97821026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgcggctgcagagccagcggGactcagaggtcgactttgaa	15	10	1	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	7	97821026	97821026	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.1249	p.D417N	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	89	0	0	78	27	25.47	-	-	-	A	97821026	G	A	97821026	3	1	295	1	0	0	0	0	1	0	0	0	8915	1174	41	2	1291	2	LMTK2	7	97821026	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		97821026	61317637	36	33386										
C7orf61	0	genome.wustl.edu	37	chr7	100061348	100061348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agaggagagacaggagagagGggcagggcagagacaacacc	18	7	0	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	7	100061348	100061348	G	A	SNP	C7orf61	ENST00000418952	human	ensembl	69_37n	-1	putative	missense	c.149	p.P50L	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	C7orf61	HGNC	ENSG00000185955	46	0	0	32	15	31.91	-	-	-	A	100061348	G	A	100061348	3	1	295	1	0	0	0	0	1	0	0	0	2431	1247	43	4		4	C7orf61	7	100061348	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	2240322	100061348	59077315	37	33387										
DGKI	0	genome.wustl.edu	37	chr7	137270022	137270022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tttccacatggaggttccagCgatctagctgtacaactgtc	9	11	1	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	7	137270022	137270022	C	T	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.1496	p.R499H	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	148	0	0	156	83	34.73	-	-	-	T	137270022	C	T	137270022	3	4	295	1	0	0	0	0	1	0	0	0	4507	768	27	1	1785	1	DGKI	7	137270022	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	37208674	137270022	21868641	38	33388										
ST18	0	genome.wustl.edu	37	chr8	53084705	53084705	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aagggataaatttgtcacctTcagtttttatttcaggaact	7	6	3	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	8	53084705	53084705	T	G	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.716	p.E239A	0.997	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	146	0	0	157	38	19.49	-	-	-	G	53084705	T	G	53084705	3	3	295	1	0	0	0	0	1	0	0	0	15303	1783	62	5	2495	5	ST18	8	53084705	Missense_Mutation	SNP	T	TCGA-AN-A0FV-01A-11W-A019-09		53084705	93279317	39	33389										
TRIM55	0	genome.wustl.edu	37	chr8	67064633	67064633	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agatgaagatgaagaagaagAagaaggcggagaaggagaaa	16	1	0	10			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	8	67064633	67064633	A	C	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	missense	c.1007	p.E336A	0.937	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	126	0	0	106	84	43.98	-	-	-	C	67064633	A	C	67064633	3	2	295	1	0	0	0	0	1	0	0	0	16625	246	9	5	1037	5	TRIM55	8	67064633	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	13979928	67064633	79299389	40	33390										
ANGPT1	0	genome.wustl.edu	37	chr8	108509559	108509559	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agtttctgggaagagaaatcCggttccacgtgtggagcatc	13	8	1	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	8	108509559	108509559	C	A	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	silent	c.228	p.P76	0.997	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	123	0	0	113	28	19.86	-	-	-	A	108509559	C	A	108509559	2	1	295	1	0	0	0	0	0	0	0	1	610	639	23	3		3	ANGPT1	8	108509559	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	41444926	108509559	37854463	41	33391										
FGD3	0	genome.wustl.edu	37	chr9	95765284	95765284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	acctatgtgaagcggctgcaCctgctggaccaggtagccca	12	13	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	9	95765284	95765284	C	A	SNP	FGD3	ENST00000337352	human	ensembl	69_37n	1	known	missense	c.531	p.H177Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084	131	0	0	112	70	38.46	-	-	-	A	95765284	C	A	95765284	3	1	295	1	0	0	0	0	1	0	0	0	5880	506	18	4	537	4	FGD3	9	95765284	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09		95765284	45448147	42	33392										
TTLL11	0	genome.wustl.edu	37	chr9	124751816	124751816	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ttggctatataaatctctaaGgggtctaaggacttgagtaa	10	5	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	9	124751816	124751816	G	C	SNP	TTLL11	ENST00000321582	human	ensembl	69_37n	-1	known	silent	c.1197	p.P399	0.998	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL11	HGNC	ENSG00000175764	223	0	0	337	72	17.56	-	-	-	C	124751816	G	C	124751816	2	2	295	1	0	0	0	0	0	0	0	1	16821	987	35	4		4	TTLL11	9	124751816	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	28986532	124751816	16461615	43	33393										
RAPGEF1	0	genome.wustl.edu	37	chr9	134501378	134501378	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ggttgactcaggagcagtaaAatcacccacaaattcgacag	9	10	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	9	134501378	134501378	A	C	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	missense	c.1636	p.F546V	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	76	0	0	99	46	31.72	-	-	-	C	134501378	A	C	134501378	3	2	295	1	0	0	0	0	1	0	0	0	13126	14	1	5	1711	5	RAPGEF1	9	134501378	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	9749562	134501378	6712053	44	33394										
STAM	0	genome.wustl.edu	37	chr10	17702520	17702520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gggcctcattttggatatctGtgataaagttggtcagtctc	11	7	4	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	10	17702520	17702520	G	A	SNP	STAM	ENST00000377524	human	ensembl	69_37n	1	known	missense	c.98	p.C33Y	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	331	0	0	353	129	26.76	-	-	-	A	17702520	G	A	17702520	3	1	295	1	0	0	0	0	1	0	0	0	15339	1377	48	4	104	4	STAM	10	17702520	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		17702520	117832227	45	33395										
USP54	0	genome.wustl.edu	37	chr10	75258501	75258501	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctgtgtccagagtgggaggcAtaactgctttgcctccagtc	12	11	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	10	75258501	75258501	A	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	silent	c.4941	p.Y1647	0.894	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	174	0	0	190	48	20.17	-	-	-	G	75258501	A	G	75258501	2	3	295	1	0	0	0	0	0	0	0	1	17182	224	8	5		5	USP54	10	75258501	Silent	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	57555981	75258501	60276246	46	33396										
MGMT	0	genome.wustl.edu	37	chr10	131506231	131506231	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	atgcagtgcacagcctggctGaatgcctatttccaccagcc	9	14	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	10	131506231	131506231	G	A	SNP	MGMT	ENST00000306010	human	ensembl	69_37n	1	known	silent	c.291	p.L97	0.946	pfam_MethylG_MeTrfase	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430	110	0	0	97	27	21.77	-	-	-	A	131506231	G	A	131506231	2	1	295	1	0	0	0	0	0	0	0	1	9628	1277	45	2		2	MGMT	10	131506231	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	56247730	131506231	4028516	47	33397										
OR8K1	0	genome.wustl.edu	37	chr11	56114084	56114084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tactgtgactgtatccctctGatgtccatactctgttctga	7	11	3	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	11	56114084	56114084	G	A	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	silent	c.570	p.L190	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	282	0	0	392	96	19.63	-	-	-	A	56114084	G	A	56114084	2	1	295	1	0	0	0	0	0	0	0	1	11316	1277	45	2		2	OR8K1	11	56114084	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		56114084	78892432	48	33398										
OR10G7	0	genome.wustl.edu	37	chr11	123909455	123909455	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agatagtcctgccgcttgggGacaccaaggtcatcagcatt	11	11	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	11	123909455	123909455	G	C	SNP	OR10G7	ENST00000330487	human	ensembl	69_37n	-1	known	missense	c.254	p.S85C	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634	442	0	0	210	106	33.54	-	-	-	C	123909455	G	C	123909455	3	2	295	1	0	0	0	0	1	0	0	0	10975	1174	41	2	685	2	OR10G7	11	123909455	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	67795371	123909455	11097061	49	33399										
OPCML	0	genome.wustl.edu	37	chr11	133402219	133402219	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ccagtaggcaggatggtacaTctcgacgctgcggtgctctc	13	12	2	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	11	133402219	133402219	T	C	SNP	OPCML	ENST00000524381	human	ensembl	69_37n	-1	known	missense	c.1	p.M1V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	OPCML	HGNC	ENSG00000183715	42	0	0	19	7	26.92	-	-	-	C	133402219	T	C	133402219	3	2	295	1	0	0	0	0	1	0	0	0	10947	1435	50	5	1129	5	OPCML	11	133402219	Missense_Mutation	SNP	T	TCGA-AN-A0FV-01A-11W-A019-09	9492764	133402219	1604297	50	33400										
MED13L	0	genome.wustl.edu	37	chr12	116457650	116457653	+	Frame_Shift_Del	DEL	TTCT	TTCT	-													0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tcgtcttcctctttcgattcTtctttcttttttagcaccat							TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	TTCT	TTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	12	116457650	116457653	TTCT	-	DEL	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	frame_shift_del	c.753_750	p.E251fs	0.358:0.998:1.000:0.998	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	231	0	0	296	50	14.41	-	-	-	-	116457653	TTCT	-	116457650	7	5	295	1	0	1	0	1	0	0	0	0	9502	1606	56	0	5983	0	MED13L	12	116457650	Frame_Shift_Del	DEL	TTCT	TCGA-AN-A0FV-01A-11W-A019-09		116457650	17394245	51	33401										
GPC6	0	genome.wustl.edu	37	chr13	94197641	94197641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agacaagccattttgtgcgcAccacttttgtgtccaggcat	9	11	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	13	94197641	94197641	A	G	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.286	p.T96A	0.997	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	329	2	0.6	450	96	17.55	-	-	-	G	94197641	A	G	94197641	3	3	295	1	0	0	0	0	1	0	0	0	6652	159	6	5	292	5	GPC6	13	94197641	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09		94197641	20972237	52	33402										
DHRS4L2	0	genome.wustl.edu	37	chr14	24470124	24470124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gatgacaaaggcagtggtgcCagaaatggagaaacgagggt	16	5	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	14	24470124	24470124	C	T	SNP	DHRS4L2	ENST00000382755	human	ensembl	69_37n	1	known	missense	c.455	p.P152L	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	DHRS4L2	HGNC	ENSG00000187630	241	0	0	294	55	15.76	-	-	-	T	24470124	C	T	24470124	3	4	295	1	0	0	0	0	1	0	0	0	4530	594	21	4	475	4	DHRS4L2	14	24470124	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09		24470124	82879416	53	33403										
SEC23A	0	genome.wustl.edu	37	chr14	39532596	39532596	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tccacatatcttccactgacAtgtgccacctgttcctatct	4	15	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	14	39532596	39532596	A	T	SNP	SEC23A	ENST00000307712	human	ensembl	69_37n	-1	known	missense	c.1330	p.C444S	0.937	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934	64	0	0	98	12	10.91	-	-	-	T	39532596	A	T	39532596	3	4	295	1	0	0	0	0	1	0	0	0	14079	217	8	5	1003	5	SEC23A	14	39532596	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	15062472	39532596	67816944	54	33404										
RFX7	0	genome.wustl.edu	37	chr15	56386801	56386801	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tcggtttcacaggactacttGagacaatgctggcgtcatga	11	9	2	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	15	56386801	56386801	G	C	SNP	RFX7	ENST00000423270	human	ensembl	69_37n	-1	known	nonsense	c.3125	p.S1042*	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	159	0	0	130	55	29.73	-	-	-	C	56386801	G	C	56386801	4	2	295	1	0	0	0	0	0	1	0	0	13351	1294	45	2	1261	2	RFX7	15	56386801	Nonsense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		56386801	46144591	55	33405										
GCNT3	0	genome.wustl.edu	37	chr15	59910998	59910998	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tcttgcttcccaaatgtcttCatagccagtaagctggttcg	8	11	3	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	15	59910998	59910998	C	T	SNP	GCNT3	ENST00000396065	human	ensembl	69_37n	1	known	silent	c.561	p.F187	0.294	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT3	HGNC	ENSG00000140297	187	0	0	265	86	24.43	-	-	-	T	59910998	C	T	59910998	2	4	295	1	0	0	0	0	0	0	0	1	6352	825	29	2		2	GCNT3	15	59910998	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	3524197	59910998	42620394	56	33406										
RBBP6	0	genome.wustl.edu	37	chr16	24567161	24567161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gttacatgaagaaacctctaGgtccaccacctccatcttac	5	14	2	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	16	24567161	24567161	G	C	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.457	p.G153R	1.000	superfamily_Znf_CCHC	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	179	0	0	336	66	16.38	-	-	-	C	24567161	G	C	24567161	3	2	295	1	0	0	0	0	1	0	0	0	13186	1000	35	4	533	4	RBBP6	16	24567161	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		24567161	65787592	57	33407										
CNOT1	0	genome.wustl.edu	37	chr16	58617082	58617082	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gattatattgcgacattcttCaatactgaaacagaaatata	5	6	2	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	16	58617082	58617082	C	G	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.811	p.E271Q	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	29	0	0	63	20	24.1	-	-	-	G	58617082	C	G	58617082	3	3	295	1	0	0	0	0	1	0	0	0	3647	835	29	2	6705	2	CNOT1	16	58617082	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	34049921	58617082	31737671	58	33408										
ABR	0	genome.wustl.edu	37	chr17	995066	995066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	cacgggctgggaggtggtggCggtggccttcaggggtttca	20	8	2	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	995066	995066	C	T	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.370	p.A124T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	112	0	0	87	28	24.35	-	-	-	T	995066	C	T	995066	3	4	295	1	0	0	0	0	1	0	0	0	99	768	27	1	2289	1	ABR	17	995066	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09		995066	80200144	59	33409										
TP53	0	genome.wustl.edu	37	chr17	7577526	7577526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	cttccagtgtgatgatggtgAggatgggcctccggttcatg	15	8	1	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	7577526	7577526	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.755	p.L252P	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	79	0	0	54	65	54.62	-	-	-	G	7577526	A	G	7577526	3	3	295	1	0	0	0	0	1	0	0	0	16477	304	11	5	535	5	TP53	17	7577526	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09	6582460	7577526	73617684	60	33410										
B9D1	0	genome.wustl.edu	37	chr17	19246827	19246827	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ggctggggcagagagagaccCaggttgatctgggaatctca	16	8	2	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	19246827	19246827	C	A	SNP	B9D1	ENST00000395616	human	ensembl	69_37n	-1	putative	missense	c.509	p.W170L	0.000	NULL	pfam_B9_dom	-	no_errors	B9D1	HGNC	ENSG00000108641	34	0	0	19	6	24	-	-	-	A	19246827	C	A	19246827	3	1	295	1	0	0	0	0	1	0	0	0	1281	609	21	4		4	B9D1	17	19246827	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	11669301	19246827	61948383	61	33411										
FOXN1	0	genome.wustl.edu	37	chr17	26861358	26861358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgttccggcagacagcacccGatggctggaagaattctgtc	12	11	1	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	26861358	26861358	G	A	SNP	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	missense	c.937	p.D313N	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	108	0	0	167	37	18.14	-	-	-	A	26861358	G	A	26861358	3	1	295	1	0	0	0	0	1	0	0	0	6067	1058	37	1	959	1	FOXN1	17	26861358	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	7614531	26861358	54333852	62	33412										
DHRS11	0	genome.wustl.edu	37	chr17	34956183	34956183	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aaggcagctgccacctatgaGcaaatgaaggtggggcctcc	13	11	0	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	34956183	34956183	G	A	SNP	DHRS11	ENST00000251312	human	ensembl	69_37n	1	known	silent	c.666	p.E222	0.886	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	DHRS11	HGNC	ENSG00000108272	129	0	0	72	34	32.08	-	-	-	A	34956183	G	A	34956183	2	1	295	1	0	0	0	0	0	0	0	1	4523	962	34	4		4	DHRS11	17	34956183	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	8094825	34956183	46239027	63	33413										
PSMD3	0	genome.wustl.edu	37	chr17	38140650	38140650	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ccttccacatcacgccgcctCaaccactatgttctgtataa	4	16	3	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	38140650	38140650	C	G	SNP	PSMD3	ENST00000264639	human	ensembl	69_37n	1	known	silent	c.324	p.L108	1.000	NULL	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	119	0	0	1633	295	15.28	-	-	-	G	38140650	C	G	38140650	2	3	295	1	0	0	0	0	0	0	0	1	12779	813	29	2		2	PSMD3	17	38140650	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	3184467	38140650	43054560	64	33414										
CACNA1G	0	genome.wustl.edu	37	chr17	48695611	48695611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	gagacacacccctgtgagggCctgggccgtcatgccacctt	12	15	1	2			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	48695611	48695611	C	T	SNP	CACNA1G	ENST00000506406	human	ensembl	69_37n	1	known	missense	c.5285	p.A1762V	1.000	NULL	pfam_Ion_trans_dom,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	63	0	0	54	23	29.87	-	-	-	T	48695611	C	T	48695611	3	4	295	1	0	0	0	0	1	0	0	0	2569	726	26	4	5727	4	CACNA1G	17	48695611	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	10554961	48695611	32499599	65	33415										
BZRAP1	0	genome.wustl.edu	37	chr17	56395674	56395674	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	catgacttggggctgttgtgGatggactcggagtgggagga	19	5	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	17	56395674	56395674	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	silent	c.1839	p.I613	0.940	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	68	0	0	286	739	72.03	-	-	-	A	56395674	G	A	56395674	2	1	295	1	0	0	0	0	0	0	0	1	1586	1164	41	2		2	BZRAP1	17	56395674	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	7700063	56395674	24799536	66	33416										
MC4R	0	genome.wustl.edu	37	chr18	58038781	58038781	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	attctgaggacaagagatgtAgaatattaagtggaggaaga	13	2	1	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	18	58038781	58038781	A	C	SNP	MC4R	ENST00000299766	human	ensembl	69_37n	-1	known	missense	c.802	p.Y268D	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Melancort_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603	143	1	0.69	176	82	31.78	-	-	-	C	58038781	A	C	58038781	3	2	295	1	0	0	0	0	1	0	0	0	9437	420	15	5	200	5	MC4R	18	58038781	Missense_Mutation	SNP	A	TCGA-AN-A0FV-01A-11W-A019-09		58038781	20038467	67	33417										
ATCAY	0	genome.wustl.edu	37	chr19	3905527	3905527	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ctctggatcagagtgaggggTccctgctgtccgatgacttc	13	11	2	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	19	3905527	3905527	T	G	SNP	ATCAY	ENST00000301260	human	ensembl	69_37n	1	known	missense	c.232	p.S78A	1.000	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	ATCAY	HGNC	ENSG00000167654	39	0	0	26	34	56.67	-	-	-	G	3905527	T	G	3905527	3	3	295	1	0	0	0	0	1	0	0	0	1081	1667	58	5	242	5	ATCAY	19	3905527	Missense_Mutation	SNP	T	TCGA-AN-A0FV-01A-11W-A019-09		3905527	55223456	68	33418										
ZNF844	0	genome.wustl.edu	37	chr19	12187501	12187501	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	cctcacaccttcaaatgcatGaaaggactcacactggaaag	7	12	3	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	19	12187501	12187501	G	C	SNP	ZNF844	ENST00000439326	human	ensembl	69_37n	1	known	missense	c.1566	p.M522I	0.023	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547	166	0	0	202	83	29.12	-	-	-	C	12187501	G	C	12187501	3	2	295	1	0	0	0	0	1	0	0	0	18283	1290	45	2	1580	2	ZNF844	19	12187501	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	8281974	12187501	46941482	69	33419										
PTPRT	0	genome.wustl.edu	37	chr20	41420103	41420103	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agctgttcaccatcatgaaaGatcctggagacccacaaagc	8	12	2	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	20	41420103	41420103	G	C	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.218	p.S73C	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	89	0	0	109	36	24.83	-	-	-	C	41420103	G	C	41420103	3	2	295	1	0	0	0	0	1	0	0	0	12895	942	33	2	4284	2	PTPRT	20	41420103	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		41420103	21605417	70	33420										
PPDPF	0	genome.wustl.edu	37	chr20	62152893	62152893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	ggttccacttccagcaacagCtcctgcagcagtaccgagtg	10	14	0	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	20	62152893	62152893	C	T	SNP	PPDPF	ENST00000370177	human	ensembl	69_37n	1	known	silent	c.84	p.S28	1.000	NULL	NULL	-	no_errors	PPDPF	HGNC	ENSG00000125534	20	0	0	5	25	83.33	-	-	-	T	62152893	C	T	62152893	2	4	295	1	0	0	0	0	0	0	0	1	12379	796	28	4		4	PPDPF	20	62152893	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	20732790	62152893	872627	71	33421										
GGTLC2	0	genome.wustl.edu	37	chr22	22988911	22988911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	aagcccgagttctacacgccGgttgatgggggcactgctca	13	12	2	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	22	22988911	22988911	G	A	SNP	GGTLC2	ENST00000448514	human	ensembl	69_37n	1	known	silent	c.96	p.P32	0.990	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121	15	0	0	5	3	37.5	-	-	-	A	22988911	G	A	22988911	2	1	295	1	0	0	0	0	0	0	0	1	6418	1103	39	1		1	GGTLC2	22	22988911	Silent	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09		22988911	28315655	72	33422										
TOMM22	0	genome.wustl.edu	37	chr22	39079782	39079782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tcttttccagatacttctagGacctaacacagggctctcag	7	12	3	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	22	39079782	39079782	G	A	SNP	TOMM22	ENST00000216034	human	ensembl	69_37n	1	known	missense	c.365	p.G122E	1.000	NULL	pfam_Tom22	-	no_errors	TOMM22	HGNC	ENSG00000100216	94	0	0	165	25	13.16	-	-	-	A	39079782	G	A	39079782	3	1	295	1	0	0	0	0	1	0	0	0	16451	1174	41	2	379	2	TOMM22	22	39079782	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	16090871	39079782	12224784	73	33423										
TBC1D22A	0	genome.wustl.edu	37	chr22	47393596	47393596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tgttagaagaactcgtgagcCggattgatggtaagccagct	13	7	0	4			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	22	47393596	47393596	C	T	SNP	TBC1D22A	ENST00000337137	human	ensembl	69_37n	1	known	missense	c.1192	p.R398W	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611	41	0	0	41	13	24.07	-	-	-	T	47393596	C	T	47393596	3	4	295	1	0	0	0	0	1	0	0	0	15703	643	23	1	1230	1	TBC1D22A	22	47393596	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	8313814	47393596	3910970	74	33424										
EGFL6	0	genome.wustl.edu	37	chrX	13618176	13618176	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	agctacaagtgcttttgcctCagtggccacatgctcatgcc	9	13	2	0			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	X	13618176	13618176	C	T	SNP	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	silent	c.363	p.L121	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	155	0	0	214	55	20.3	-	-	-	T	13618176	C	T	13618176	2	4	295	1	0	0	0	0	0	0	0	1	4998	813	29	2		2	EGFL6	23	13618176	Silent	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09		13618176	141652384	75	33425										
SYAP1	0	genome.wustl.edu	37	chrX	16775411	16775411	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tagtgcttgacaaaaagcaaGaggagacagccgtactggaa	12	7	0	3			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	X	16775411	16775411	G	C	SNP	SYAP1	ENST00000380155	human	ensembl	69_37n	1	known	missense	c.910	p.E304Q	0.547	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895	116	0	0	215	53	19.78	-	-	-	C	16775411	G	C	16775411	3	2	295	1	0	0	0	0	1	0	0	0	15517	943	33	2	940	2	SYAP1	23	16775411	Missense_Mutation	SNP	G	TCGA-AN-A0FV-01A-11W-A019-09	3157235	16775411	138495149	76	33426										
ALAS2	0	genome.wustl.edu	37	chrX	55046896	55046896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	20	0.000116675530158254	2.7641196013289	4.23255813953488	2.05214940098661	1	1	13	tactggtgcctgagatgttgCgggtgccaccagctccagca	13	12	0	1			TCGA-AN-A0FV-01A-11W-A019-09	TCGA-AN-A0FV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c70259c1-f561-43d7-9829-6852815baa87	6cbd9cc2-e405-49d5-b512-cae7c4460f19	X	55046896	55046896	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.680	p.R227H	1.000	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	29	0	0	51	19	27.14	-	-	-	T	55046896	C	T	55046896	3	4	295	1	0	0	0	0	1	0	0	0	485	768	27	1	1107	1	ALAS2	23	55046896	Missense_Mutation	SNP	C	TCGA-AN-A0FV-01A-11W-A019-09	38271485	55046896	100223664	77	33427										
PER3	0	genome.wustl.edu	37	chr1	7858698	7858698	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ggaatcggaaccttgctgtcTcactgtggttgaaaagattc	11	8	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	7858698	7858698	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.755	p.L252H	0.981	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	169	0	0	123	39	24.07	-	-	-	A	7858698	T	A	7858698	3	1	296	1	0	0	0	0	1	0	0	0	11804	1551	54	5	777	5	PER3	1	7858698	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09		7858698	241391923	1	33428										
GSTM4	0	genome.wustl.edu	37	chr1	110204002	110204002	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tttctcctgtttattcccatCtttacccccaagactttatt	2	13	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	110204002	110204002	C	T	SNP	GSTM4	ENST00000493395	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GSTM4	HGNC	ENSG00000168765	100	0	0	76	24	23.76	-	-	-	T	110204002	C	T	110204002	1	4	296	0	1	0	0	0	0	0	0	0	6891	928	32	2		2	GSTM4	1	110204002	RNA	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	102345304	110204002	139046619	2	33429										
DENND2C	0	genome.wustl.edu	37	chr1	115168526	115168526	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cattagcccttccttcccatTgagaaattttttgtttgatg	6	9	0	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	115168526	115168526	T	A	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	missense	c.80	p.Q27L	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	136	1	0.73	72	70	49.3	-	-	-	A	115168526	T	A	115168526	3	1	296	1	0	0	0	0	1	0	0	0	4466	1812	63	5	2603	5	DENND2C	1	115168526	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09	4964524	115168526	134082095	3	33430										
FCRL2	0	genome.wustl.edu	37	chr1	157739898	157739898	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcactggacccccttcgatgGgctggaaggagctggcagtc	14	12	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	157739898	157739898	G	C	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	missense	c.353	p.P118R	0.164	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	63	0	0	126	24	16	-	-	-	C	157739898	G	C	157739898	3	2	296	1	0	0	0	0	1	0	0	0	5841	1232	43	4	1209	4	FCRL2	1	157739898	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	42571372	157739898	91510723	4	33431										
F5	0	genome.wustl.edu	37	chr1	169510162	169510162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ctgcaaagaggggcatctcaCtgaggtctggggaaaggttt	15	7	2	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	169510162	169510162	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4181	p.S1394N	0.003	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	341	0	0	600	74	10.98	-	-	-	T	169510162	C	T	169510162	3	4	296	1	0	0	0	0	1	0	0	0	5385	565	20	4	2560	4	F5	1	169510162	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	11770264	169510162	79740459	5	33432										
FMO4	0	genome.wustl.edu	37	chr1	171293331	171293331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tctccgaaactggtcagtggGatgttgtcacagagacagag	13	8	3	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	171293331	171293331	G	A	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.376	p.D126N	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	302	0	0	531	86	13.92	-	-	-	A	171293331	G	A	171293331	3	1	296	1	0	0	0	0	1	0	0	0	6003	1174	41	2	386	2	FMO4	1	171293331	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	1783169	171293331	77957290	6	33433										
CACNA1E	0	genome.wustl.edu	37	chr1	181685256	181685256	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	atgagcactgtgttgatatcTcctctgtgggtgagtggatc	13	7	2	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	181685256	181685256	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1306	p.S436P	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	267	0	0	428	51	10.65	-	-	-	C	181685256	T	C	181685256	3	2	296	1	0	0	0	0	1	0	0	0	2567	1551	54	5	1344	5	CACNA1E	1	181685256	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09	10391925	181685256	67565365	7	33434										
TPR	0	genome.wustl.edu	37	chr1	186305686	186305686	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcctttctggttttttcttcCttttcagttatctgttgtcg	7	9	4	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	186305686	186305686	C	A	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.4647	p.K1549N	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	173	0	0	262	38	12.67	-	-	-	A	186305686	C	A	186305686	3	1	296	1	0	0	0	0	1	0	0	0	16512	680	24	4	2520	4	TPR	1	186305686	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	4620430	186305686	62944935	8	33435										
OR6F1	0	genome.wustl.edu	37	chr1	247875610	247875610	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aatggccacgaaaccacacaCccaggagcccagggccagct	10	16	0	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	247875610	247875610	C	A	SNP	OR6F1	ENST00000302084	human	ensembl	69_37n	-1	known	missense	c.448	p.V150L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	123	0	0	162	39	19.4	-	-	-	A	247875610	C	A	247875610	3	1	296	1	0	0	0	0	1	0	0	0	11274	507	18	4	482	4	OR6F1	1	247875610	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	61569924	247875610	1375011	9	33436										
OR2L2	0	genome.wustl.edu	37	chr1	248202323	248202323	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ctgtagtgtccttctactatGcaccctttgcttatacctat	5	12	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	1	248202323	248202323	G	T	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	missense	c.754	p.A252S	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	267	0	0	429	60	12.24	-	-	-	T	248202323	G	T	248202323	3	4	296	1	0	0	0	0	1	0	0	0	11080	1319	46	4	756	4	OR2L2	1	248202323	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	326713	248202323	1048298	10	33437										
MAPRE3	0	genome.wustl.edu	37	chr2	27247108	27247108	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agggccaggacgtagcgccaCctcctaacccaggtgatcag	12	14	1	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	27247108	27247108	C	G	SNP	MAPRE3	ENST00000233121	human	ensembl	69_37n	1	known	missense	c.412	p.P138A	0.401	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764	58	0	0	60	12	16.67	-	-	-	G	27247108	C	G	27247108	3	3	296	1	0	0	0	0	1	0	0	0	9367	507	18	4	422	4	MAPRE3	2	27247108	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		27247108	215952265	11	33438										
BMP10	0	genome.wustl.edu	37	chr2	69092930	69092930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gaccaaggcctggataattgCatgctttgtgggtgtgagat	14	6	0	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	69092930	69092930	C	T	SNP	BMP10	ENST00000295379	human	ensembl	69_37n	-1	known	missense	c.1108	p.A370T	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217	251	0	0	73	171	70.08	-	-	-	T	69092930	C	T	69092930	3	4	296	1	0	0	0	0	1	0	0	0	1462	710	25	4	170	4	BMP10	2	69092930	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	41845822	69092930	174106443	12	33439										
NCAPH	0	genome.wustl.edu	37	chr2	97007425	97007426	+	Frame_Shift_Ins	INS	-	-	C													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcttcagagacgcgaggacaINScccccacagtgcctcctctc							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	97007425	97007426	-	C	INS	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	frame_shift_ins	c.65_66	p.H24fs	0.001:0.000	pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	39	0	0	32	21	39.62	-	-	-	C	97007426	-	C	97007425	7	5	296	1	0	1	1	0	0	0	0	0	10281	159	6	0	71	0	NCAPH	2	97007425	Frame_Shift_Ins	INS	-	TCGA-AN-A0FW-01A-11W-A050-09	27914495	97007425	146191948	13	33440										
VWA3B	0	genome.wustl.edu	37	chr2	98834364	98834364	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcaggaaattcctatttataCcatctccttcaattacaatg	3	10	3	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	98834364	98834364	C	A	SNP	VWA3B	ENST00000489630	human	ensembl	69_37n	1	known	nonsense	c.123	p.Y41*	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	171	0	0	164	29	15.03	-	-	-	A	98834364	C	A	98834364	4	1	296	1	0	0	0	0	0	1	0	0	17338	507	18	4	1942	4	VWA3B	2	98834364	Nonsense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	1826939	98834364	144365009	14	33441										
BAZ2B	0	genome.wustl.edu	37	chr2	160303435	160303435	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tagtggatagtacagatgtgTtgataccaattacagatgat	10	4	0	4			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	160303435	160303435	T	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.554	p.N185S	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	309	0	0	173	58	25.11	-	-	-	C	160303435	T	C	160303435	3	2	296	1	0	0	0	0	1	0	0	0	1336	1725	60	5	6080	5	BAZ2B	2	160303435	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09	61469071	160303435	82895938	15	33442										
ITGAV	0	genome.wustl.edu	37	chr2	187516748	187516748	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gtaaatgctggtcttgaagtGtaccctagcattttaaatca	8	7	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	187516748	187516748	G	T	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	silent	c.1437	p.V479	0.080	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	143	0	0	151	50	24.88	-	-	-	T	187516748	G	T	187516748	2	4	296	1	0	0	0	0	0	0	0	1	7942	1364	48	4		4	ITGAV	2	187516748	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	27213313	187516748	55682625	16	33443										
PLCL1	0	genome.wustl.edu	37	chr2	198948674	198948674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	acacagaccttcaagctcttCgctgggaaccttcaaagaaa	7	12	3	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	198948674	198948674	C	T	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.433	p.R145C	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	164	0	0	141	26	15.57	-	-	-	T	198948674	C	T	198948674	3	4	296	1	0	0	0	0	1	0	0	0	12113	884	31	1	439	1	PLCL1	2	198948674	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	11431926	198948674	44250699	17	33444										
HDLBP	0	genome.wustl.edu	37	chr2	242179382	242179382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcgtcctcctttccaatgatGgtgatcaggtcctggtcctt	10	12	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	2	242179382	242179382	G	A	SNP	HDLBP	ENST00000373292	human	ensembl	69_37n	-1	novel	missense	c.1750	p.H584Y	0.827	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDLBP	HGNC	ENSG00000115677	100	0	0	122	22	15.28	-	-	-	A	242179382	G	A	242179382	3	1	296	1	0	0	0	0	1	0	0	0	7076	1335	47	4	1525	4	HDLBP	2	242179382	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	43230708	242179382	1019991	18	33445										
PPARG	0	genome.wustl.edu	37	chr3	12434181	12434182	+	Frame_Shift_Ins	INS	-	-	A													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	atcttaactgtcggatccacINSaaaaaaagtagaaataaatg							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	12434181	12434182	-	A	INS	PPARG	ENST00000287820	human	ensembl	69_37n	1	known	frame_shift_ins	c.549_550	p.S185fs	1.000:1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	154	0	0	111	42	27.45	-	-	-	A	12434182	-	A	12434181	7	5	296	1	0	1	1	0	0	0	0	0	12372	477	17	0	563	0	PPARG	3	12434181	Frame_Shift_Ins	INS	-	TCGA-AN-A0FW-01A-11W-A050-09		12434181	185588249	19	33446										
RBMS3	0	genome.wustl.edu	37	chr3	29804454	29804454	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcaacattttaatggaaaatAtctgaaaacaccaccaggca	5	9	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	29804454	29804454	A	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.611	p.Y204F	0.997	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	102	0	0	68	52	43.33	-	-	-	T	29804454	A	T	29804454	3	4	296	1	0	0	0	0	1	0	0	0	13233	449	16	5	633	5	RBMS3	3	29804454	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	17370273	29804454	168217976	20	33447										
DNAH12	0	genome.wustl.edu	37	chr3	57330424	57330424	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cagtccgtggatataaacacCatcttctggtgatgtgtcag	10	9	3	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	57330424	57330424	C	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.8968	p.G2990R	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	156	0	0	115	87	43.07	-	-	-	G	57330424	C	G	57330424	3	3	296	1	0	0	0	0	1	0	0	0	4636	594	21	4	322	4	DNAH12	3	57330424	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	27525970	57330424	140692006	21	33448										
SENP7	0	genome.wustl.edu	37	chr3	101046584	101046584	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gtcctgtttaggaactttagGgcatagatccaccatgtttg	10	8	0	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	101046584	101046584	G	A	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	missense	c.2941	p.P981S	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	303	0	0	218	40	15.5	-	-	-	A	101046584	G	A	101046584	3	1	296	1	0	0	0	0	1	0	0	0	14139	1232	43	4	219	4	SENP7	3	101046584	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	43716160	101046584	96975846	22	33449										
DZIP3	0	genome.wustl.edu	37	chr3	108361332	108361332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aactgatactgatataagacCgaagatcagtttaaaattta	6	5	1	4			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	108361332	108361332	C	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.1112	p.P371L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	41	0	0	20	10	33.33	-	-	-	T	108361332	C	T	108361332	3	4	296	1	0	0	0	0	1	0	0	0	4900	652	23	1	1158	1	DZIP3	3	108361332	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	7314748	108361332	89661098	23	33450										
MED12L	0	genome.wustl.edu	37	chr3	151127066	151127066	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	caggctgctctctttgctgcGcaagcacggccctcccctca	9	18	2	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	151127066	151127066	G	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.5751	p.A1917	0.992	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	49	0	0	64	15	18.99	-	-	-	A	151127066	G	A	151127066	2	1	296	1	0	0	0	0	0	0	0	1	9500	1074	38	1		1	MED12L	3	151127066	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	42765734	151127066	46895364	24	33451										
DLG1	0	genome.wustl.edu	37	chr3	197024060	197024060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	acggaataaactctcaccttGcttccggaccggcatttttc	7	13	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	3	197024060	197024060	G	C	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.16	p.Q6E	1.000	pfam_L27_1,pirsf_M-assoc_guanylate_kinase,pfscan_L27	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	176	0	0	112	28	20	-	-	-	C	197024060	G	C	197024060	3	2	296	1	0	0	0	0	1	0	0	0	4590	1328	46	4	2902	4	DLG1	3	197024060	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	45896994	197024060	998370	25	33452										
G3BP2	0	genome.wustl.edu	37	chr4	76573867	76573867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aaccaggtcgttctctaggtCgttgttcacgcacacgaggt	11	11	2	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	4	76573867	76573867	C	A	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.884	p.R295L	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	216	0	0	124	76	38	-	-	-	A	76573867	C	A	76573867	3	1	296	1	0	0	0	0	1	0	0	0	6191	884	31	3	580	3	G3BP2	4	76573867	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		76573867	114580409	26	33453										
HCN1	0	genome.wustl.edu	37	chr5	45267191	45267191	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aaggtagaaaactagagtacCtattcgatctagtcggtcaa	9	7	2	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	5	45267191	45267191	C	A	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	nonsense	c.1783	p.G595*	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	117	0	0	73	47	39.17	-	-	-	A	45267191	C	A	45267191	4	1	296	1	0	0	0	0	0	1	0	0	7047	695	24	4	897	4	HCN1	5	45267191	Nonsense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		45267191	135648069	27	33454										
JMY	0	genome.wustl.edu	37	chr5	78610274	78610274	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcacagacaacagaaccccaGagccttgtgcaacttgaaga	8	12	1	5			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	5	78610274	78610274	G	C	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	missense	c.2259	p.Q753H	0.856	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	161	0	0	100	41	29.08	-	-	-	C	78610274	G	C	78610274	3	2	296	1	0	0	0	0	1	0	0	0	8011	933	33	2	2293	2	JMY	5	78610274	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	33343083	78610274	102304986	28	33455										
OR2Y1	0	genome.wustl.edu	37	chr5	180166708	180166708	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcatagcggtcaaaggccatCaccaccaggagcacacactc	9	15	2	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	5	180166708	180166708	C	T	SNP	OR2Y1	ENST00000307832	human	ensembl	69_37n	-1	known	silent	c.351	p.V117	0.941	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339	189	0	0	87	44	33.59	-	-	-	T	180166708	C	T	180166708	2	4	296	1	0	0	0	0	0	0	0	1	11108	813	29	2		2	OR2Y1	5	180166708	Silent	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	101556434	180166708	748552	29	33456										
HIST1H3J	0	genome.wustl.edu	37	chr6	27858488	27858488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cgccagtcgctggagcgcttTtgcgcgctgccttggtggcc	15	14	0	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	6	27858488	27858488	T	C	SNP	HIST1H3J	ENST00000359303	human	ensembl	69_37n	-1	known	missense	c.83	p.K28R	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3J	HGNC	ENSG00000197153	22	0	0	49	10	16.95	-	-	-	C	27858488	T	C	27858488	3	2	296	1	0	0	0	0	1	0	0	0	7215	1841	64	5	331	5	HIST1H3J	6	27858488	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09		27858488	143256579	30	33457										
EYS	0	genome.wustl.edu	37	chr6	66204693	66204693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agtattttccagaaaatggaGgctggcaatggcagctatat	11	6	0	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	6	66204693	66204693	G	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.611	p.P204L	0.974	pfam_EGF-like_dom,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	59	0	0	32	8	20	-	-	-	A	66204693	G	A	66204693	3	1	296	1	0	0	0	0	1	0	0	0	5369	1000	35	4	8945	4	EYS	6	66204693	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	38346205	66204693	104910374	31	33458										
CDK13	0	genome.wustl.edu	37	chr7	40038962	40038962	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tagaactatatttgatagaaTatgtgggcctcgctatggtg	11	5	0	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	7	40038962	40038962	T	A	SNP	CDK13	ENST00000181839	human	ensembl	69_37n	1	known	missense	c.2045	p.I682K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	106	0	0	99	23	18.85	-	-	-	A	40038962	T	A	40038962	3	1	296	1	0	0	0	0	1	0	0	0	3158	1406	49	5	2059	5	CDK13	7	40038962	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09		40038962	119099701	32	33459										
CDK6	0	genome.wustl.edu	37	chr7	92355060	92355060	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agatcgcgatgcactactcgGtgtgaatgaagaaagtccag	12	8	0	4			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	7	92355060	92355060	G	T	SNP	CDK6	ENST00000265734	human	ensembl	69_37n	-1	known	missense	c.417	p.H139Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK6	HGNC	ENSG00000105810	205	0	0	102	29	22.14	-	-	-	T	92355060	G	T	92355060	3	4	296	1	0	0	0	0	1	0	0	0	3177	1252	44	4	583	4	CDK6	7	92355060	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	52316098	92355060	66783603	33	33460										
PILRB	0	genome.wustl.edu	37	chr7	99956435	99956435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	attacccctgggagttagccAtagttcccaacgtgagaata	9	10	0	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	7	99956435	99956435	A	G	SNP	PILRB	ENST00000310771	human	ensembl	69_37n	1	known	missense	c.187	p.I63V	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PILRB	HGNC	ENSG00000121716	142	0	0	98	40	28.78	-	-	-	G	99956435	A	G	99956435	3	3	296	1	0	0	0	0	1	0	0	0	12000	217	8	5	193	5	PILRB	7	99956435	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	7601375	99956435	59182228	34	33461										
HOOK3	0	genome.wustl.edu	37	chr8	42873640	42873640	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcagccggccacagcaaggtAgagaagttgtgccgctcaat	13	11	1	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	8	42873640	42873640	A	G	SNP	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	nonstop	c.2156	p.*719W	1.000	NULL	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	55	0	0	68	16	19.05	-	-	-	G	42873640	A	G	42873640	4	3	296	1	0	0	0	0	0	0	0	0	7335	433	15	5	2242	5	HOOK3	8	42873640	Nonstop_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09		42873640	103490382	35	33462										
SDCBP	0	genome.wustl.edu	37	chr8	59492212	59492212	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cggacgattaccatgcataaGgatagcactggacatgttgg	12	8	0	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	8	59492212	59492212	G	A	SNP	SDCBP	ENST00000260130	human	ensembl	69_37n	1	known	silent	c.609	p.K203	1.000	superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC	ENSG00000137575	121	1	0.82	99	25	20.16	-	-	-	A	59492212	G	A	59492212	2	1	296	1	0	0	0	0	0	0	0	1	14043	991	35	4		4	SDCBP	8	59492212	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	16618572	59492212	86871810	36	33463										
ZFHX4	0	genome.wustl.edu	37	chr8	77618443	77618443	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ttgtgaggtttgtaactactCtaccactaccaaaggcaacc	7	11	1	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	8	77618443	77618443	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2120	p.S707F	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	82	0	0	76	20	20.83	-	-	-	T	77618443	C	T	77618443	3	4	296	1	0	0	0	0	1	0	0	0	17731	913	32	2	2122	2	ZFHX4	8	77618443	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	18126231	77618443	68745579	37	33464										
NUP188	0	genome.wustl.edu	37	chr9	131760904	131760904	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcctccggcagtggaagaggTgaggctgtgccaggagaggc	18	9	0	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	9	131760904	131760904	T	A	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	splice_site	c.3515+2	e32+2	1.000	-	-	-	no_errors	NUP188	HGNC	ENSG00000095319	47	0	0	49	16	24.62	-	-	-	A	131760904	T	A	131760904	5	1	296	1	0	0	0	0	0	0	1	0	10831	1710	59	5	3643	5	NUP188	9	131760904	Splice_Site	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09		131760904	9452527	38	33465										
BNIP3	0	genome.wustl.edu	37	chr10	133784252	133784252	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	acgctcgtgttcctcatgctGagggtggccgtgcgcttcgg	15	12	1	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	10	133784252	133784252	G	C	SNP	BNIP3	ENST00000368636	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	1.000	pfam_BNIP3	pfam_BNIP3	-	no_errors	BNIP3	HGNC	ENSG00000176171	131	0	0	66	39	37.14	-	-	-	C	133784252	G	C	133784252	2	2	296	1	0	0	0	0	0	0	0	1	1483	1277	45	2		2	BNIP3	10	133784252	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09		133784252	1750495	39	33466										
OR52N4	0	genome.wustl.edu	37	chr11	5776082	5776082	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcccattctgctctatgtatGttgtggctatggtagggaat	11	7	2	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	11	5776082	5776082	G	T	SNP	OR52N4	ENST00000317254	human	ensembl	69_37n	1	known	missense	c.112	p.V38F	0.291	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52N4	HGNC	ENSG00000181074	220	0	0	154	43	21.83	-	-	-	T	5776082	G	T	5776082	3	4	296	1	0	0	0	0	1	0	0	0	11202	1377	48	4	114	4	OR52N4	11	5776082	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09		5776082	129230434	40	33467										
AMBRA1	0	genome.wustl.edu	37	chr11	46430198	46430198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ggcagggttccggggctgaaGcccaatggcattcatcagcc	14	12	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	11	46430198	46430198	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.3268	p.L1090F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	33	0	0	39	19	32.76	-	-	-	A	46430198	G	A	46430198	3	1	296	1	0	0	0	0	1	0	0	0	565	971	34	4	636	4	AMBRA1	11	46430198	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	40654116	46430198	88576318	41	33468										
OR5M1	0	genome.wustl.edu	37	chr11	56380447	56380447	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aagaggaggatcagcgcagtAgaaatgattgatttcaaggg	14	4	2	4			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	11	56380447	56380447	A	C	SNP	OR5M1	ENST00000526538	human	ensembl	69_37n	-1	known	missense	c.532	p.Y178D	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M1	HGNC	ENSG00000255012	107	0	0	114	31	21.38	-	-	-	C	56380447	A	C	56380447	3	2	296	1	0	0	0	0	1	0	0	0	11245	420	15	5	419	5	OR5M1	11	56380447	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	9950249	56380447	78626069	42	33469										
FAM168A	0	genome.wustl.edu	37	chr11	73141811	73141811	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gctgctggataggctgtgggGtaacctacagagagataaga	15	6	0	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	11	73141811	73141811	G	C	SNP	FAM168A	ENST00000064778	human	ensembl	69_37n	-1	known	nonsense	c.75	p.Y25*	1.000	NULL	NULL	-	no_errors	FAM168A	HGNC	ENSG00000054965	267	0	0	168	83	33.07	-	-	-	C	73141811	G	C	73141811	4	2	296	1	0	0	0	0	0	1	0	0	5525	1256	44	4	652	4	FAM168A	11	73141811	Nonsense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	16761364	73141811	61864705	43	33470										
MLL	0	genome.wustl.edu	37	chr11	118367017	118367017	+	Frame_Shift_Del	DEL	C	C	-													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	acagtccagagctgaacccaCccccaggcatagaagacaat							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	11	118367017	118367017	C	-	DEL	MLL	ENST00000389506	human	ensembl	69_37n	1	known	frame_shift_del	c.5590	p.P1865fs	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	341	0	0	83	137	59.31	-	-	-	-	118367017	C	-	118367017	7	5	296	1	0	1	0	1	0	0	0	0	9691	507	18	0	5668	0	MLL	11	118367017	Frame_Shift_Del	DEL	C	TCGA-AN-A0FW-01A-11W-A050-09	45225206	118367017	16639499	44	33471										
SYT10	0	genome.wustl.edu	37	chr12	33592394	33592394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ctggccggcgaagcacagctCggtgacgatgtgcagagcct	15	12	0	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	12	33592394	33592394	C	T	SNP	SYT10	ENST00000228567	human	ensembl	69_37n	-1	known	missense	c.64	p.E22K	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975	112	0	0	97	35	26.52	-	-	-	T	33592394	C	T	33592394	3	4	296	1	0	0	0	0	1	0	0	0	15558	893	31	1	1535	1	SYT10	12	33592394	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		33592394	100259501	45	33472										
ARID2	0	genome.wustl.edu	37	chr12	46287254	46287254	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cctagagcacaaaaggccatTgtgaatcatcccagtgctgc	9	12	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	12	46287254	46287254	T	G	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.5199	p.I1733M	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	203	0	0	116	30	20.55	-	-	-	G	46287254	T	G	46287254	3	3	296	1	0	0	0	0	1	0	0	0	917	1800	63	5	5273	5	ARID2	12	46287254	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09	12694860	46287254	87564641	46	33473										
TBK1	0	genome.wustl.edu	37	chr12	64849731	64849731	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcaaatgtctttcgtggaagAcataaggttagtacagagaa	11	5	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	12	64849731	64849731	A	T	SNP	TBK1	ENST00000331710	human	ensembl	69_37n	1	known	missense	c.81	p.R27S	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TBK1	HGNC	ENSG00000183735	47	0	0	47	8	14.29	-	-	-	T	64849731	A	T	64849731	3	4	296	1	0	0	0	0	1	0	0	0	15732	272	10	5	83	5	TBK1	12	64849731	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	18562477	64849731	69002164	47	33474										
TMEM132D	0	genome.wustl.edu	37	chr12	129559313	129559313	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gctgtcactggtgttggggtTagcatcgttttggccaaatt	13	7	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	12	129559313	129559313	T	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2407	p.N803Y	0.845	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	186	0	0	140	52	27.08	-	-	-	A	129559313	T	A	129559313	3	1	296	1	0	0	0	0	1	0	0	0	16142	1754	61	5	896	5	TMEM132D	12	129559313	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09	64709582	129559313	4292582	48	33475										
ZNF268	0	genome.wustl.edu	37	chr12	133780972	133780974	+	In_Frame_Del	DEL	CTT	CTT	-													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tgcaatgaatgtgggaaaacCttctctcaaaaatcaattct							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	12	133780972	133780974	CTT	-	DEL	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	in_frame_del	c.2700_2702	p.F901in_frame_del	0.001:0.175:0.158	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	83	0	0	105	13	11.02	-	-	-	-	133780974	CTT	-	133780972	7	5	296	1	0	1	0	1	0	0	0	0	17903	668	24	0		0	ZNF268	12	133780972	In_Frame_Del	DEL	CTT	TCGA-AN-A0FW-01A-11W-A050-09	4221659	133780972	70923	49	33476										
DOCK9	0	genome.wustl.edu	37	chr13	99536130	99536130	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agtggcttgcctccatctacCcatttaatttccggaccata	6	13	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	13	99536130	99536130	C	A	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.2409	p.W803C	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	160	0	0	90	60	40	-	-	-	A	99536130	C	A	99536130	3	1	296	1	0	0	0	0	1	0	0	0	4729	624	22	4	4001	4	DOCK9	13	99536130	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		99536130	15633748	50	33477										
TMTC4	0	genome.wustl.edu	37	chr13	101289953	101289953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cccgttcctgagcatgccgaGattctgcaaggacatcgcaa	10	13	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	13	101289953	101289953	G	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.838	p.L280F	0.000	NULL	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	61	0	0	54	16	22.54	-	-	-	A	101289953	G	A	101289953	3	1	296	1	0	0	0	0	1	0	0	0	16358	942	33	2	1488	2	TMTC4	13	101289953	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	1753823	101289953	13879925	51	33478										
MYO16	0	genome.wustl.edu	37	chr13	109437984	109437984	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tttttttctttttatctaggCtggagccaatgtccttctcc	6	10	3	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	13	109437984	109437984	C	A	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.443	p.A148D	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	162	0	0	177	40	18.43	-	-	-	A	109437984	C	A	109437984	3	1	296	1	0	0	0	0	1	0	0	0	10136	811	28	4	457	4	MYO16	13	109437984	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	8148031	109437984	5731894	52	33479										
ANKRD10	0	genome.wustl.edu	37	chr13	111532189	111532189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tggctatgcagctacttggaCtcccgttcaggtgcagagaa	12	10	1	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	13	111532189	111532189	C	A	SNP	ANKRD10	ENST00000267339	human	ensembl	69_37n	-1	known	missense	c.1058	p.S353I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448	58	0	0	52	13	20	-	-	-	A	111532189	C	A	111532189	3	1	296	1	0	0	0	0	1	0	0	0	638	565	20	4	208	4	ANKRD10	13	111532189	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	2094205	111532189	3637689	53	33480										
UPF3A	0	genome.wustl.edu	37	chr13	115052027	115052027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gaagtttttagaaacctactGtgtggaggaagagaagacca	12	5	0	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	13	115052027	115052027	G	A	SNP	UPF3A	ENST00000375299	human	ensembl	69_37n	1	known	missense	c.554	p.C185Y	0.998	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062	183	0	0	193	42	17.87	-	-	-	A	115052027	G	A	115052027	3	1	296	1	0	0	0	0	1	0	0	0	17102	1377	48	4	572	4	UPF3A	13	115052027	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	3519838	115052027	117851	54	33481										
TTC5	0	genome.wustl.edu	37	chr14	20768886	20768886	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tccagcttcacagcctttgaCagaagctcctcagccttagg	8	14	2	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	14	20768886	20768886	C	A	SNP	TTC5	ENST00000423949	human	ensembl	69_37n	-1	novel	splice_site	c.273+1	e3+1	0.980	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTC5	HGNC	ENSG00000136319	106	0	0	96	33	25.58	-	-	-	A	20768886	C	A	20768886	5	1	296	1	0	0	0	0	0	0	1	0	16808	465	17	4	1078	4	TTC5	14	20768886	Splice_Site	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		20768886	86580654	55	33482										
AP4E1	0	genome.wustl.edu	37	chr15	51250849	51250849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcaggcgcactcttctaataCagttgagagattaatccatg	8	9	3	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	15	51250849	51250849	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	missense	c.1709	p.T570I	0.035	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	195	0	0	182	39	17.65	-	-	-	T	51250849	C	T	51250849	3	4	296	1	0	0	0	0	1	0	0	0	753	478	17	4	1763	4	AP4E1	15	51250849	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		51250849	51280543	56	33483										
CCPG1	0	genome.wustl.edu	37	chr15	55652817	55652818	+	Frame_Shift_Del	DEL	TC	TC	-													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ctagtcgttctctctccagtTctctctttagcatctttgct							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	15	55652817	55652818	TC	-	DEL	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	frame_shift_del	c.1154_1153	p.E385fs	0.998:0.994	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	72	0	0	79	15	15.96	-	-	-	-	55652818	TC	-	55652817	7	5	296	1	0	1	0	1	0	0	0	0	2967	1783	62	0	1123	0	CCPG1	15	55652817	Frame_Shift_Del	DEL	TC	TCGA-AN-A0FW-01A-11W-A050-09	4401968	55652817	46878575	57	33484										
BNC1	0	genome.wustl.edu	37	chr15	83926261	83926261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gattctggctgtgtctgtttCgactgcgaacagacgaaaac	11	9	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	15	83926261	83926261	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2918	p.R973Q	0.997	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	94	0	0	112	20	15.15	-	-	-	T	83926261	C	T	83926261	3	4	296	1	0	0	0	0	1	0	0	0	1479	884	31	1	70	1	BNC1	15	83926261	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	28273444	83926261	18605131	58	33485										
ABAT	0	genome.wustl.edu	37	chr16	8860107	8860107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gcttctcccaggaggagctgGagacgtgcatgattaaccag	13	10	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	16	8860107	8860107	G	A	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	missense	c.583	p.E195K	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	42	0	0	66	26	28.26	-	-	-	A	8860107	G	A	8860107	3	1	296	1	0	0	0	0	1	0	0	0	27	1175	41	2	613	2	ABAT	16	8860107	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09		8860107	81494646	59	33486										
XYLT1	0	genome.wustl.edu	37	chr16	17228421	17228421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gtacaaggtgagtgtcacgtCgctcaggctgtggatgccgt	15	9	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	16	17228421	17228421	C	T	SNP	XYLT1	ENST00000261381	human	ensembl	69_37n	-1	known	missense	c.1936	p.D646N	1.000	pfam_XylT_met	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	92	0	0	115	53	31.55	-	-	-	T	17228421	C	T	17228421	3	4	296	1	0	0	0	0	1	0	0	0	17560	884	31	1	959	1	XYLT1	16	17228421	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	8368314	17228421	73126332	60	33487										
ATP2A1	0	genome.wustl.edu	37	chr16	28889996	28889996	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cccaggaagggagcacaatgGaggccgctcatgctaaaacc	12	12	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	16	28889996	28889996	G	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	nonsense	c.4	p.E2*	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	74	0	0	72	65	47.1	-	-	-	T	28889996	G	T	28889996	4	4	296	1	0	0	0	0	0	1	0	0	1140	1175	41	2	6	2	ATP2A1	16	28889996	Nonsense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	11661575	28889996	61464757	61	33488										
TAOK2	0	genome.wustl.edu	37	chr16	29994057	29994057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agtgccctcttcccccagcaCcgctttgtgctccgggagcg	11	17	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	16	29994057	29994057	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	silent	c.834	p.H278	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	60	0	0	86	11	11.34	-	-	-	T	29994057	C	T	29994057	2	4	296	1	0	0	0	0	0	0	0	1	15640	506	18	4		4	TAOK2	16	29994057	Silent	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	1104061	29994057	60360696	62	33489										
C16orf3	0	genome.wustl.edu	37	chr16	90095620	90095620	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ggcagcctacggggcaggctAcggggcaggcccttgcactg	17	13	0	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	16	90095620	90095620	A	G	SNP	C16orf3	ENST00000408886	human	ensembl	69_37n	-1	known	missense	c.131	p.V44A	0.005	NULL	NULL	-	no_errors	C16orf3	HGNC	ENSG00000221819	14	0	0	35	7	16.67	-	-	-	G	90095620	A	G	90095620	3	3	296	1	0	0	0	0	1	0	0	0	1825	391	14	5	226	5	C16orf3	16	90095620	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	60101563	90095620	259133	63	33490										
OR3A3	0	genome.wustl.edu	37	chr17	3324376	3324376	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	actgacccacactgtggccaTgtccacgctcaacttctgtg	8	15	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	17	3324376	3324376	T	A	SNP	OR3A3	ENST00000291231	human	ensembl	69_37n	1	known	missense	c.515	p.M172K	0.009	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A3	HGNC	ENSG00000159961	244	0	0	134	51	27.57	-	-	-	A	3324376	T	A	3324376	3	1	296	1	0	0	0	0	1	0	0	0	11112	1464	51	5	517	5	OR3A3	17	3324376	Missense_Mutation	SNP	T	TCGA-AN-A0FW-01A-11W-A050-09		3324376	77870834	64	33491										
OR1E2	0	genome.wustl.edu	37	chr17	3337085	3337085	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tgctgctctggttggatgggCaggcccaggagcaggaagtc	17	9	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	17	3337085	3337085	C	A	SNP	OR1E2	ENST00000248384	human	ensembl	69_37n	-1	known	silent	c.51	p.L17	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1E2	HGNC	ENSG00000127780	458	0	0	253	140	35.44	-	-	-	A	3337085	C	A	3337085	2	1	296	1	0	0	0	0	0	0	0	1	11028	697	25	4		4	OR1E2	17	3337085	Silent	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	12709	3337085	77858125	65	33492										
MYH3	0	genome.wustl.edu	37	chr17	10547934	10547934	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tgacctttggtaacgtactcAttcccaactttcactctagg	6	12	3	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	17	10547934	10547934	A	G	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.1227	p.N409	0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	82	0	0	82	24	22.02	-	-	-	G	10547934	A	G	10547934	2	3	296	1	0	0	0	0	0	0	0	1	10108	214	8	5		5	MYH3	17	10547934	Silent	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	7210849	10547934	70647276	66	33493										
STAT5A	0	genome.wustl.edu	37	chr17	40453429	40453429	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tgaaggccaccatcatcagtGagcagcaggccaagtctctg	11	12	3	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	17	40453429	40453429	G	T	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	nonsense	c.1126	p.E376*	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	73	0	0	39	25	39.06	-	-	-	T	40453429	G	T	40453429	4	4	296	1	0	0	0	0	0	1	0	0	15359	1291	45	2	1156	2	STAT5A	17	40453429	Nonsense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	29905495	40453429	40741781	67	33494										
ST8SIA5	0	genome.wustl.edu	37	chr18	44336460	44336460	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcccggttggccgaggggtcCgcgtagcgcatcctggctac	15	14	0	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	18	44336460	44336460	C	T	SNP	ST8SIA5	ENST00000315087	human	ensembl	69_37n	-1	known	silent	c.12	p.A4	0.936	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638	31	0	0	25	10	28.57	-	-	-	T	44336460	C	T	44336460	2	4	296	1	0	0	0	0	0	0	0	1	15326	639	23	1		1	ST8SIA5	18	44336460	Silent	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		44336460	33740788	68	33495										
ZBTB7C	0	genome.wustl.edu	37	chr18	45566518	45566519	+	Frame_Shift_Ins	INS	-	-	C													0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gccttgatgggtcccagaggINScccccccggcaggtcaggga							TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	18	45566518	45566519	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	frame_shift_ins	c.961_960	p.P320fs	1.000:0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	42	0	0	26	4	13.33	-	-	-	C	45566519	-	C	45566518	7	5	296	1	0	1	1	0	0	0	0	0	17651	1203	42	0	906	0	ZBTB7C	18	45566518	Frame_Shift_Ins	INS	-	TCGA-AN-A0FW-01A-11W-A050-09	1230058	45566518	32510730	69	33496										
NFIC	0	genome.wustl.edu	37	chr19	3381782	3381782	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cctacacctggttcaacctgCaggcgcggaagcgcaagtac	11	14	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	3381782	3381782	C	T	SNP	NFIC	ENST00000443272	human	ensembl	69_37n	1	known	nonsense	c.103	p.Q35*	1.000	pfam_CTF/NFI_DNA-bd_N,pfscan_CTF/NFI_DNA-bd-dom	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIC	HGNC	ENSG00000141905	18	0	0	47	9	16.07	-	-	-	T	3381782	C	T	3381782	4	4	296	1	0	0	0	0	0	1	0	0	10444	711	25	4	116	4	NFIC	19	3381782	Nonsense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		3381782	55747201	70	33497										
NWD1	0	genome.wustl.edu	37	chr19	16860608	16860608	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	agctcagatgcccgtggcctGctgaagagcatctgcttcca	11	13	2	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	16860608	16860608	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	silent	c.1155	p.L385	0.979	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	22	0	0	17	5	22.73	-	-	-	T	16860608	G	T	16860608	2	4	296	1	0	0	0	0	0	0	0	1	10854	1306	46	4		4	NWD1	19	16860608	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	13478826	16860608	42268375	71	33498										
ZNF585A	0	genome.wustl.edu	37	chr19	37644489	37644489	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	aggatttttctacattgattAtggtcccataatttctctcc	5	9	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	37644489	37644489	A	G	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	silent	c.312	p.H104	0.020	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	67	0	0	81	16	16.49	-	-	-	G	37644489	A	G	37644489	2	3	296	1	0	0	0	0	0	0	0	1	18113	446	16	5		5	ZNF585A	19	37644489	Silent	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09	20783881	37644489	21484494	72	33499										
PRX	0	genome.wustl.edu	37	chr19	40902117	40902117	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tcagggactttcatttcacaGactttgggcagctgcacctc	9	12	3	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	40902117	40902117	G	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.2142	p.V714	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	58	0	0	66	9	12	-	-	-	C	40902117	G	C	40902117	2	2	296	1	0	0	0	0	0	0	0	1	12722	929	33	2		2	PRX	19	40902117	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	3257628	40902117	18226866	73	33500										
GRIK5	0	genome.wustl.edu	37	chr19	42566761	42566761	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	acagacgcgaagcgaaggtaCtgaaggcggggtgtctcctc	15	10	1	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	42566761	42566761	C	G	SNP	GRIK5	ENST00000301218	human	ensembl	69_37n	-1	known	missense	c.387	p.Q129H	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737	60	0	0	104	19	15.45	-	-	-	G	42566761	C	G	42566761	3	3	296	1	0	0	0	0	1	0	0	0	6828	564	20	4	2619	4	GRIK5	19	42566761	Missense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	1664644	42566761	16562222	74	33501										
GP6	0	genome.wustl.edu	37	chr19	55525717	55525717	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	atcttgttttctaatgtgaaGggaagcgggcaacgtgctag	13	6	2	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	19	55525717	55525717	G	T	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	silent	c.1596	p.P532	0.001	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	123	0	0	118	30	20.27	-	-	-	T	55525717	G	T	55525717	2	4	296	1	0	0	0	0	0	0	0	1	6634	987	35	4		4	GP6	19	55525717	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	12958956	55525717	3603266	75	33502										
EMILIN3	0	genome.wustl.edu	37	chr20	39993701	39993701	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gtcccggggcacttgggcccCcatctacactgccggtattc	11	16	1	0			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	20	39993701	39993701	C	T	SNP	EMILIN3	ENST00000332312	human	ensembl	69_37n	-1	known	nonsense	c.264	p.W88*	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798	33	0	0	49	8	14.04	-	-	-	T	39993701	C	T	39993701	4	4	296	1	0	0	0	0	0	1	0	0	5132	624	22	4	2048	4	EMILIN3	20	39993701	Nonsense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09		39993701	23031819	76	33503										
ZFP64	0	genome.wustl.edu	37	chr20	50768782	50768782	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gtagttcttgctgggaagagGaggagaagaccggtggcgct	18	6	1	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	20	50768782	50768782	G	T	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1949	p.S650Y	0.078	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	60	0	0	51	6	10.53	-	-	-	T	50768782	G	T	50768782	3	4	296	1	0	0	0	0	1	0	0	0	17748	1174	41	2	1291	2	ZFP64	20	50768782	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	10775081	50768782	12256738	77	33504										
CYP24A1	0	genome.wustl.edu	37	chr20	52782317	52782317	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	atgaagttcacagcttcatcCcctgcattcttctggagaag	8	11	4	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	20	52782317	52782317	C	A	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	silent	c.696	p.G232	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	122	0	0	176	27	13.24	-	-	-	A	52782317	C	A	52782317	2	1	296	1	0	0	0	0	0	0	0	1	4185	610	22	4		4	CYP24A1	20	52782317	Silent	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	2013535	52782317	10243203	78	33505										
GNAS	0	genome.wustl.edu	37	chr20	57428536	57428536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	gaggcctgtggacccccagaGgtctccagacccaactttca	10	15	2	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	20	57428536	57428536	G	A	SNP	GNAS	ENST00000306120	human	ensembl	69_37n	1	putative	missense	c.26	p.R9K	0.003	NULL	NULL	-	no_errors	GNAS	HGNC	ENSG00000087460	12	0	0	23	10	30.3	-	-	-	A	57428536	G	A	57428536	3	1	296	1	0	0	0	0	1	0	0	0	6562	1000	35	4	960	4	GNAS	20	57428536	Missense_Mutation	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	4646219	57428536	5596984	79	33506										
SYCP2	0	genome.wustl.edu	37	chr20	58453083	58453083	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	cattttagagcttggctgtcCcttttccaaggatgatcctg	9	10	0	2			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	20	58453083	58453083	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	nonsense	c.2959	p.G987*	0.001	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	183	0	0	232	39	14.39	-	-	-	A	58453083	C	A	58453083	4	1	296	1	0	0	0	0	0	1	0	0	15524	632	22	4	1689	4	SYCP2	20	58453083	Nonsense_Mutation	SNP	C	TCGA-AN-A0FW-01A-11W-A050-09	1024547	58453083	4572437	80	33507										
PPEF1	0	genome.wustl.edu	37	chrX	18822013	18822013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	tggtttgttgttccaagattAttgatattctgtggagtgat	11	3	1	3			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	X	18822013	18822013	A	C	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1069	p.I357L	0.066	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	255	0	0	119	97	44.91	-	-	-	C	18822013	A	C	18822013	3	2	296	1	0	0	0	0	1	0	0	0	12380	449	16	5	1111	5	PPEF1	23	18822013	Missense_Mutation	SNP	A	TCGA-AN-A0FW-01A-11W-A050-09		18822013	136448547	81	33508										
GRIA3	0	genome.wustl.edu	37	chrX	122387164	122387164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.480081590916809	1.47368421052632	2.52631578947368	1.12280701754386	1	1	0	ctcattgcagtctgctcccaGttctcgagaggggtgtatgc	12	11	3	1			TCGA-AN-A0FW-01A-11W-A050-09	TCGA-AN-A0FW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5afde43a-194c-4876-b244-2132aef2f505	46a8d552-b686-4976-988e-a18128e26017	X	122387164	122387164	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	silent	c.279	p.Q93	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	217	0	0	97	63	39.38	-	-	-	A	122387164	G	A	122387164	2	1	296	1	0	0	0	0	0	0	0	1	6820	1020	36	4		4	GRIA3	23	122387164	Silent	SNP	G	TCGA-AN-A0FW-01A-11W-A050-09	103565151	122387164	32883396	82	33509										
VAMP3	0	genome.wustl.edu	37	chr1	7837293	7837293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gctctctgagttagacgaccGtgcagacgcactgcaggcag	13	12	1	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	7837293	7837293	G	A	SNP	VAMP3	ENST00000054666	human	ensembl	69_37n	1	known	missense	c.146	p.R49H	1.000	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP3	HGNC	ENSG00000049245	132	0	0	89	20	18.18	-	-	-	A	7837293	G	A	7837293	3	1	297	1	0	0	0	0	1	0	0	0	17211	1145	40	1	156	1	VAMP3	1	7837293	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		7837293	241413328	1	33510										
TMEM201	0	genome.wustl.edu	37	chr1	9657089	9657089	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	caccaagatcaagcagctggCcgccttcgctccccgcgagg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	9657089	9657089	C	-	DEL	TMEM201	ENST00000340381	human	ensembl	69_37n	1	known	frame_shift_del	c.407	p.A137fs	0.999	pfam_DUF2349	pfam_DUF2448,pfam_DUF2349	-	no_errors	TMEM201	HGNC	ENSG00000188807	25	0	0	36	200	84.03	-	-	-	-	9657089	C	-	9657089	7	5	297	1	0	1	0	1	0	0	0	0	16221	739	26	0	417	0	TMEM201	1	9657089	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09	1819796	9657089	239593532	2	33511										
UBR4	0	genome.wustl.edu	37	chr1	19524455	19524455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcttaccaagctcttgaagaCtagccacgttctgagctatg	8	11	3	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	19524455	19524455	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.737	p.S246T	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	135	0	0	85	15	14.85	-	-	-	G	19524455	C	G	19524455	3	3	297	1	0	0	0	0	1	0	0	0	17001	565	20	4	15218	4	UBR4	1	19524455	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	9867366	19524455	229726166	3	33512										
ST3GAL3	0	genome.wustl.edu	37	chr1	44365341	44365341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cgattctctctttgtcctcgCcggcttcaagtggcaggact	10	13	3	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	44365341	44365341	C	T	SNP	ST3GAL3	ENST00000262915	human	ensembl	69_37n	1	known	missense	c.893	p.A298V	0.999	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091	79	0	0	42	7	14.29	-	-	-	T	44365341	C	T	44365341	3	4	297	1	0	0	0	0	1	0	0	0	15307	739	26	4	927	4	ST3GAL3	1	44365341	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	24840886	44365341	204885280	4	33513										
YIPF1	0	genome.wustl.edu	37	chr1	54325811	54325811	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gagatggtccatctctggtgCatcaaaaaagtatgcctgtg	11	8	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	54325811	54325811	C	A	SNP	YIPF1	ENST00000539954	human	ensembl	69_37n	-1	known	missense	c.922	p.A308S	1.000	NULL	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799	219	0	0	85	14	14.14	-	-	-	A	54325811	C	A	54325811	3	1	297	1	0	0	0	0	1	0	0	0	17574	710	25	4	77	4	YIPF1	1	54325811	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	9960470	54325811	194924810	5	33514										
CGN	0	genome.wustl.edu	37	chr1	151502028	151502029	+	Frame_Shift_Ins	INS	-	-	T													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cgacaggactgtgaagaggcINSttccaaggcaaggggagtgg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	151502028	151502029	-	T	INS	CGN	ENST00000271636	human	ensembl	69_37n	1	known	frame_shift_ins	c.2099_2100	p.S701fs	1.000:1.000	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	65	0	0	66	33	33.33	-	-	-	T	151502029	-	T	151502028	7	5	297	1	0	1	1	0	0	0	0	0	3332	797	28	0	2137	0	CGN	1	151502028	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	97176217	151502028	97748593	6	33515										
FLG2	0	genome.wustl.edu	37	chr1	152329344	152329344	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	atatagctaaattgatttccTtgccctccaaatctatgtga	5	9	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	152329344	152329344	T	C	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	silent	c.918	p.Q306	0.067	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	73	0	0	38	34	46.58	-	-	-	C	152329344	T	C	152329344	2	2	297	1	0	0	0	0	0	0	0	1	5969	1606	56	5		5	FLG2	1	152329344	Silent	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	827316	152329344	96921277	7	33516										
LCE1E	0	genome.wustl.edu	37	chr1	152759900	152759900	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	taagtgccctccagtctcttCctgctgcagtgtcagctccg	9	15	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	152759900	152759900	C	G	SNP	LCE1E	ENST00000368770	human	ensembl	69_37n	1	known	missense	c.125	p.S42C	0.998	NULL	NULL	-	no_errors	LCE1E	HGNC	ENSG00000186226	218	0	0	151	53	25.98	-	-	-	G	152759900	C	G	152759900	3	3	297	1	0	0	0	0	1	0	0	0	8717	855	30	2	127	2	LCE1E	1	152759900	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	430556	152759900	96490721	8	33517										
ATP1A4	0	genome.wustl.edu	37	chr1	160141540	160141540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gagcaagtgtcgcagtgcagGaattaaggtaaatacttgcc	12	7	0	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	160141540	160141540	G	T	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.1847	p.G616V	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	95	0	0	83	11	11.7	-	-	-	T	160141540	G	T	160141540	3	4	297	1	0	0	0	0	1	0	0	0	1135	1174	41	2	1893	2	ATP1A4	1	160141540	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	7381640	160141540	89109081	9	33518										
CACNA1E	0	genome.wustl.edu	37	chr1	181693635	181693635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgaatgtgttcttggctatcGctgtggataatctcgccaac	10	9	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	181693635	181693635	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.2104	p.A702T	1.000	pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	184	0	0	69	52	42.98	-	-	-	A	181693635	G	A	181693635	3	1	297	1	0	0	0	0	1	0	0	0	2567	1087	38	1	2170	1	CACNA1E	1	181693635	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	21552095	181693635	67556986	10	33519										
TMEM9	0	genome.wustl.edu	37	chr1	201112979	201112979	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cctcattgtgcagttgctcaGtatatgcatccggctttcgg	10	11	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	201112979	201112979	G	C	SNP	TMEM9	ENST00000367332	human	ensembl	69_37n	-1	known	missense	c.377	p.T126S	1.000	pfam_TMEM9	pfam_TMEM9	-	no_errors	TMEM9	HGNC	ENSG00000116857	113	0	0	79	29	26.85	-	-	-	C	201112979	G	C	201112979	3	2	297	1	0	0	0	0	1	0	0	0	16312	1029	36	4	191	4	TMEM9	1	201112979	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	19419344	201112979	48137642	11	33520										
NFASC	0	genome.wustl.edu	37	chr1	204971877	204971878	+	Splice_Site	DEL	GT	GT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cacctttatgaccagtacagGtgagaggggacctggcctgg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	204971877	204971878	GT	-	DEL	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	splice_site_del	c.3610+1_3610+1	e27+1	1.000:1.000	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	56	0	0	79	90	53.25	-	-	-	-	204971878	GT	-	204971877	8	5	297	1	0	1	0	1	0	0	1	0	10431	1275	44	0	3801	0	NFASC	1	204971877	Splice_Site	DEL	GT	TCGA-AN-A0FX-01A-11W-A050-09	3858898	204971877	44278744	12	33521										
C1orf101	0	genome.wustl.edu	37	chr1	244624705	244624706	+	RNA	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tggacgggagtggccgaggcINSggttgggcggaggcggagca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	244624705	244624706	-	G	INS	C1orf101	ENST00000460986	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	C1orf101	HGNC	ENSG00000179397	34	0	0	21	5	19.23	-	-	-	G	244624706	-	G	244624705	6	5	297	0	1	1	1	0	0	0	0	0	1995	783	27	0		0	C1orf101	1	244624705	RNA	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	39652828	244624705	4625916	13	33522										
OR2G2	0	genome.wustl.edu	37	chr1	247752246	247752246	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aagctggcttgtgtgggcacCacgtttaacgaggctgagct	14	9	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	1	247752246	247752246	C	A	SNP	OR2G2	ENST00000320065	human	ensembl	69_37n	1	known	silent	c.585	p.T195	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489	285	0	0	237	103	30.21	-	-	-	A	247752246	C	A	247752246	2	1	297	1	0	0	0	0	0	0	0	1	11071	581	21	4		4	OR2G2	1	247752246	Silent	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	3127541	247752246	1498375	14	33523										
ASXL2	0	genome.wustl.edu	37	chr2	25967150	25967150	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcctggaatggtccctccaaCtgaggcggctgcagcagctg	13	13	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	25967150	25967150	C	G	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.2056	p.V686L	0.977	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	64	0	0	37	6	13.95	-	-	-	G	25967150	C	G	25967150	3	3	297	1	0	0	0	0	1	0	0	0	1071	565	20	4	2255	4	ASXL2	2	25967150	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		25967150	217232223	15	33524										
OTOF	0	genome.wustl.edu	37	chr2	26700694	26700695	+	Frame_Shift_Del	DEL	AT	AT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	caaatgcctcctccctgttgAtcaggggagtgagggacctc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	26700694	26700695	AT	-	DEL	OTOF	ENST00000402415	human	ensembl	69_37n	-1	known	frame_shift_del	c.68_67	p.I23fs	0.001:0.024	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155	16	0	0	8	4	33.33	-	-	-	-	26700695	AT	-	26700694	7	5	297	1	0	1	0	1	0	0	0	0	11376	333	12	0	4152	0	OTOF	2	26700694	Frame_Shift_Del	DEL	AT	TCGA-AN-A0FX-01A-11W-A050-09	733544	26700694	216498679	16	33525										
STRN	0	genome.wustl.edu	37	chr2	37193534	37193535	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gcagcctccgccagaggcccINSgagccccttggcaccgccgg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	37193534	37193535	-	G	INS	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	frame_shift_ins	c.73_72	p.G24fs	1.000:0.998	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	8	0	0	4	2	33.33	-	-	-	G	37193535	-	G	37193534	7	5	297	1	0	1	1	0	0	0	0	0	15420	652	23	0	2341	0	STRN	2	37193534	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	10492840	37193534	206005839	17	33526										
FAM82A1	0	genome.wustl.edu	37	chr2	38178420	38178420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ccaacgatgttctccagaagAtcaagttagtacagacgccc	8	12	2	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	38178420	38178420	A	G	SNP	FAM82A1	ENST00000234195	human	ensembl	69_37n	1	known	missense	c.62	p.D21G	0.001	NULL	NULL	-	no_errors	FAM82A1	HGNC	ENSG00000115841	147	0	0	101	12	10.62	-	-	-	G	38178420	A	G	38178420	3	3	297	1	0	0	0	0	1	0	0	0	5675	333	12	5	524	5	FAM82A1	2	38178420	Missense_Mutation	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	984886	38178420	205020953	18	33527										
FSHR	0	genome.wustl.edu	37	chr2	49191077	49191080	+	Frame_Shift_Del	DEL	ATTT	ATTT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aacttcttgccttaaaatagAtttgttgcaaattggatgaa							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	ATTT	ATTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	49191077	49191080	ATTT	-	DEL	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	frame_shift_del	c.883_880	p.K294fs	0.998:0.998:1.000:1.000	pfam_GnHR_TM,prints_FSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	190	0	0	154	119	40.75	-	-	-	-	49191080	ATTT	-	49191077	7	5	297	1	0	1	0	1	0	0	0	0	6122	333	12	0	1208	0	FSHR	2	49191077	Frame_Shift_Del	DEL	ATTT	TCGA-AN-A0FX-01A-11W-A050-09	11012657	49191077	194008296	19	33528										
RTKN	0	genome.wustl.edu	37	chr2	74653445	74653445	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtccgtggggatcgctgaggTgggaggggggcaaccgagcg	22	8	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	74653445	74653445	T	G	SNP	RTKN	ENST00000272430	human	ensembl	69_37n	-1	known	silent	c.1617	p.P539	0.003	NULL	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	55	0	0	23	5	17.86	-	-	-	G	74653445	T	G	74653445	2	3	297	1	0	0	0	0	0	0	0	1	13808	1683	59	5		5	RTKN	2	74653445	Silent	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	25462368	74653445	168545928	20	33529										
INSIG2	0	genome.wustl.edu	37	chr2	118864325	118864325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gatctcagaaagtggatttcGataacaacatacagttgtct	8	7	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	118864325	118864325	G	A	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	missense	c.382	p.D128N	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	247	0	0	54	61	53.04	-	-	-	A	118864325	G	A	118864325	3	1	297	1	0	0	0	0	1	0	0	0	7820	1058	37	1	392	1	INSIG2	2	118864325	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	44210880	118864325	124335048	21	33530										
INHBB	0	genome.wustl.edu	37	chr2	121107231	121107232	+	Frame_Shift_Ins	INS	-	-	T													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggaactactgtgagggcagcINStgcccagcctacctggcagg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	2	121107231	121107232	-	T	INS	INHBB	ENST00000295228	human	ensembl	69_37n	1	known	frame_shift_ins	c.1005_1006	p.C335fs	1.000:1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083	24	0	0	9	8	47.06	-	-	-	T	121107232	-	T	121107231	7	5	297	1	0	1	1	0	0	0	0	0	7796	796	28	0	1011	0	INHBB	2	121107231	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	2242906	121107231	122092142	22	33531										
ITPR1	0	genome.wustl.edu	37	chr3	4824339	4824340	+	Frame_Shift_Del	DEL	GT	GT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aagcctacatgcaaggtgaaGtggaatttgaggatggagaa							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	3	4824339	4824340	GT	-	DEL	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	frame_shift_del	c.6379_6380	p.V2127fs	1.000:0.999	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	233	0	0	209	215	50.23	-	-	-	-	4824340	GT	-	4824339	7	5	297	1	0	1	0	1	0	0	0	0	7974	1029	36	0	6614	0	ITPR1	3	4824339	Frame_Shift_Del	DEL	GT	TCGA-AN-A0FX-01A-11W-A050-09		4824339	193198091	23	33532										
COLQ	0	genome.wustl.edu	37	chr3	15540055	15540055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtaacagagcagtcctgaaaTgatgagcagatgagcgaggc	14	7	0	6			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	3	15540055	15540055	T	C	SNP	COLQ	ENST00000383781	human	ensembl	69_37n	-1	known	missense	c.40	p.I14V	0.025	NULL	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	120	0	0	113	22	16.06	-	-	-	C	15540055	T	C	15540055	3	2	297	1	0	0	0	0	1	0	0	0	3743	1464	51	5	1365	5	COLQ	3	15540055	Missense_Mutation	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	10715716	15540055	182482375	24	33533										
RARB	0	genome.wustl.edu	37	chr3	25470351	25470351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ttcagtggattgacccaaacCgaatggcagcatcggcacac	10	12	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	3	25470351	25470351	C	T	SNP	RARB	ENST00000330688	human	ensembl	69_37n	1	known	silent	c.129	p.T43	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	125	0	0	130	26	16.56	-	-	-	T	25470351	C	T	25470351	2	4	297	1	0	0	0	0	0	0	0	1	13136	639	23	1		1	RARB	3	25470351	Silent	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	9930296	25470351	172552079	25	33534										
ZNF167	0	genome.wustl.edu	37	chr3	44612620	44612620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgagtgtgggaaggtattcaGttatagctccagccttatgg	13	6	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	3	44612620	44612620	G	A	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.2018	p.S673N	0.784	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	120	0	0	47	57	54.81	-	-	-	A	44612620	G	A	44612620	3	1	297	1	0	0	0	0	1	0	0	0	17837	1029	36	4	2036	4	ZNF167	3	44612620	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	19142269	44612620	153409810	26	33535										
TMEM207	0	genome.wustl.edu	37	chr3	190158147	190158147	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaccacagctccacagagaaGagctgccaccaaaaccagca	8	15	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	3	190158147	190158147	G	C	SNP	TMEM207	ENST00000354905	human	ensembl	69_37n	-1	known	missense	c.190	p.L64V	0.012	NULL	NULL	-	no_errors	TMEM207	HGNC	ENSG00000198398	119	0	0	60	19	24.05	-	-	-	C	190158147	G	C	190158147	3	2	297	1	0	0	0	0	1	0	0	0	16227	942	33	2	258	2	TMEM207	3	190158147	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	145545527	190158147	7864283	27	33536										
ZNF141	0	genome.wustl.edu	37	chr4	366959	366959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	catcctcacactttgctaagCataaaataattcatactgga	4	10	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	4	366959	366959	C	G	SNP	ZNF141	ENST00000240499	human	ensembl	69_37n	1	known	missense	c.733	p.H245D	0.677	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF141	HGNC	ENSG00000131127	72	0	0	26	19	42.22	-	-	-	G	366959	C	G	366959	3	3	297	1	0	0	0	0	1	0	0	0	17826	710	25	4	747	4	ZNF141	4	366959	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		366959	190787317	28	33537										
CWH43	0	genome.wustl.edu	37	chr4	49040079	49040079	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cctcgacaggaaactgcaggCtattgctgtttcaaaactac	8	11	1	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	4	49040079	49040079	C	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.1685	p.A562G	1.000	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	94	0	0	27	13	32.5	-	-	-	G	49040079	C	G	49040079	3	3	297	1	0	0	0	0	1	0	0	0	4104	797	28	4	1735	4	CWH43	4	49040079	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	48673120	49040079	142114197	29	33538										
FIP1L1	0	genome.wustl.edu	37	chr4	54243929	54243930	+	RNA	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gggttcgcgcccttctcgcgINScctcggggctgcgaggctgg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	4	54243929	54243930	-	C	INS	FIP1L1	ENST00000511376	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.968:0.579	-	-	-	no_errors	FIP1L1	HGNC	ENSG00000145216	89	0	0	14	2	12.5	-	-	-	C	54243930	-	C	54243929	6	5	297	0	1	1	1	0	0	0	0	0	5942	1102	38	0		0	FIP1L1	4	54243929	RNA	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	5203850	54243929	136910347	30	33539										
PCDH10	0	genome.wustl.edu	37	chr4	134071574	134071574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cagagcccctcctgtgtcctGcacctggaggtctttctgga	11	14	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	4	134071574	134071574	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.279	p.L93	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	53	0	0	24	4	14.29	-	-	-	A	134071574	G	A	134071574	2	1	297	1	0	0	0	0	0	0	0	1	11580	1306	46	4		4	PCDH10	4	134071574	Silent	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	79827645	134071574	57082702	31	33540										
SCOC	0	genome.wustl.edu	37	chr4	141294858	141294858	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggatccctccttctcccggcGcctcaagcggaaggtgaggg	14	14	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	4	141294858	141294858	G	A	SNP	SCOC	ENST00000510586	human	ensembl	69_37n	1	known	missense	c.56	p.R19H	0.011	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCOC	HGNC	ENSG00000153130	60	0	0	56	10	15.15	-	-	-	A	141294858	G	A	141294858	3	1	297	1	0	0	0	0	1	0	0	0	14021	1074	38	1	244	1	SCOC	4	141294858	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	7223284	141294858	49859418	32	33541										
KIAA0947	0	genome.wustl.edu	37	chr5	5461242	5461243	+	Frame_Shift_Del	DEL	AC	AC	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tggaaaaggaaaaagaagatActcaagggttcactttagga							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	5461242	5461243	AC	-	DEL	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	frame_shift_del	c.1795_1796	p.T599fs	0.000:0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	56	0	0	22	20	46.51	-	-	-	-	5461243	AC	-	5461242	7	5	297	1	0	1	0	1	0	0	0	0	8254	391	14	0	1845	0	KIAA0947	5	5461242	Frame_Shift_Del	DEL	AC	TCGA-AN-A0FX-01A-11W-A050-09		5461242	175454018	33	33542										
SEMA5A	0	genome.wustl.edu	37	chr5	9224930	9224930	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgtgaggagcgctgtggaatTgtgctggggactgtagggac	19	5	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	9224930	9224930	T	G	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.502	p.N168H	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	242	2	0.82	146	122	45.52	-	-	-	G	9224930	T	G	9224930	3	3	297	1	0	0	0	0	1	0	0	0	14125	1812	63	5	2786	5	SEMA5A	5	9224930	Missense_Mutation	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	3763688	9224930	171690330	34	33543										
C1QTNF3	0	genome.wustl.edu	37	chr5	34035771	34035772	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctggaatgccaggagggcccINSggtggcccaggggggccttg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	34035771	34035772	-	G	INS	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	frame_shift_ins	c.396_395	p.P135fs	0.014:0.888	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	99	0	0	77	13	14.44	-	-	-	G	34035772	-	G	34035771	7	5	297	1	0	1	1	0	0	0	0	0	1983	639	23	0	583	0	C1QTNF3	5	34035771	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	24810841	34035771	146879489	35	33544										
FNIP1	0	genome.wustl.edu	37	chr5	131039813	131039814	+	Frame_Shift_Ins	INS	-	-	A													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ttcaaagagaggaaaatgtgINSaaaaaaagaattcattaaat							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	131039813	131039814	-	A	INS	FNIP1	ENST00000510461	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1061_1060	p.S354fs	1.000:1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	48	0	0	13	2	13.33	-	-	-	A	131039814	-	A	131039813	7	5	297	1	0	1	1	0	0	0	0	0	6021	1294	45	0	2475	0	FNIP1	5	131039813	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	97004042	131039813	49875447	36	33545										
CDC25C	0	genome.wustl.edu	37	chr5	137621470	137621470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gctctggcttcgacacctcaGcaactcagtcttgtggtcct	9	14	4	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	137621470	137621470	G	A	SNP	CDC25C	ENST00000514017	human	ensembl	69_37n	-1	novel	missense	c.737	p.A246V	0.997	superfamily_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_start_codon:pseudogene:no_stop_codon	CDC25C	HGNC	ENSG00000158402	80	0	0	98	22	18.33	-	-	-	A	137621470	G	A	137621470	3	1	297	1	0	0	0	0	1	0	0	0	3093	962	34	4	92	4	CDC25C	5	137621470	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	6581657	137621470	43293790	37	33546										
PSD2	0	genome.wustl.edu	37	chr5	139201528	139201528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggagacacaagagcgtgagcGggtcctcacacacttctccc	11	14	2	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	139201528	139201528	G	A	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	missense	c.1148	p.R383Q	0.996	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	144	0	0	69	44	38.94	-	-	-	A	139201528	G	A	139201528	3	1	297	1	0	0	0	0	1	0	0	0	12727	1116	39	1	1166	1	PSD2	5	139201528	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	1580058	139201528	41713732	38	33547										
PCDHA9	0	genome.wustl.edu	37	chr5	140230065	140230065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggagccagcgctgacggccaCggccactgtgctggtgtcgc	16	14	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	140230065	140230065	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.1985	p.T662M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	54	0	0	25	7	21.21	-	-	-	T	140230065	C	T	140230065	3	4	297	1	0	0	0	0	1	0	0	0	11604	536	19	1	1987	1	PCDHA9	5	140230065	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	1028537	140230065	40685195	39	33548										
GRK6	0	genome.wustl.edu	37	chr5	176863238	176863238	+	Frame_Shift_Del	DEL	T	T	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgaaggaggtccccgaggagTattccgagcgcttttccccg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	176863238	176863238	T	-	DEL	GRK6	ENST00000528793	human	ensembl	69_37n	1	known	frame_shift_del	c.1222	p.Y408fs	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK6	HGNC	ENSG00000198055	69	0	0	44	171	75.66	-	-	-	-	176863238	T	-	176863238	7	5	297	1	0	1	0	1	0	0	0	0	6844	1638	57	0	1268	0	GRK6	5	176863238	Frame_Shift_Del	DEL	T	TCGA-AN-A0FX-01A-11W-A050-09	36633173	176863238	4052022	40	33549										
FLT4	0	genome.wustl.edu	37	chr5	180058766	180058766	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcgggggggtcatggagtagCcactcaccaggcctggggtg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	180058766	180058766	C	-	DEL	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	frame_shift_del	c.71	p.G24fs	1.000	prints_Tyr_kinase_VEGFR3_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	15	0	0	58	198	77.04	-	-	-	-	180058766	C	-	180058766	7	5	297	1	0	1	0	1	0	0	0	0	5990	739	26	0	4144	0	FLT4	5	180058766	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09	3195528	180058766	856494	41	33550	271	4								
FLT4	0	genome.wustl.edu	37	chr5	180058770	180058771	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggggtcatggagtagccactINScaccaggcctggggtgggag							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	180058770	180058771	-	G	INS	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	frame_shift_ins	c.67_66	p.S22fs	0.585:0.029	prints_Tyr_kinase_VEGFR3_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	13	0	0	20	197	90.78	-	-	-	G	180058771	-	G	180058770	7	5	297	1	0	1	1	0	0	0	0	0	5990	1551	54	0	4148	0	FLT4	5	180058770	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	4	180058770	856490	42	33551	271	4								
FLT4	0	genome.wustl.edu	37	chr5	180058772	180058773	+	Frame_Shift_Ins	INS	-	-	CT													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggtcatggagtagccactcaINSccaggcctggggtgggagac							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	180058772	180058773	-	CT	INS	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	frame_shift_ins	c.65_64	p.V22fs	0.025:0.997	prints_Tyr_kinase_VEGFR3_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	13	0	0	27	183	87.14	-	-	-	CT	180058773	-	CT	180058772	7	5	297	1	0	1	1	0	0	0	0	0	5990	159	6	0	4150	0	FLT4	5	180058772	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	2	180058772	856488	43	33552	271	4								
FLT4	0	genome.wustl.edu	37	chr5	180058776	180058776	+	Frame_Shift_Del	DEL	G	G	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	catggagtagccactcaccaGgcctggggtgggagacaggg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	5	180058776	180058776	G	-	DEL	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	frame_shift_del	c.61	p.L21fs	1.000	prints_Tyr_kinase_VEGFR3_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	14	0	0	15	190	91.35	-	-	-	-	180058776	G	-	180058776	7	5	297	1	0	1	0	1	0	0	0	0	5990	991	35	0	4154	0	FLT4	5	180058776	Frame_Shift_Del	DEL	G	TCGA-AN-A0FX-01A-11W-A050-09	4	180058776	856484	44	33553	271	4								
FAM135A	0	genome.wustl.edu	37	chr6	71243517	71243517	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtcttttggatgagataataCagtatattcagatatatagt	8	3	2	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	6	71243517	71243517	C	T	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	nonsense	c.3925	p.Q1309*	1.000	pfam_DUF676_lipase-like,pfam_PGAP1-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	146	0	0	34	16	31.37	-	-	-	T	71243517	C	T	71243517	4	4	297	1	0	0	0	0	0	1	0	0	5488	479	17	4	4065	4	FAM135A	6	71243517	Nonsense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		71243517	99871550	45	33554										
TAAR5	0	genome.wustl.edu	37	chr6	132910165	132910165	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggtagcaaccacaaagatctTcacatacaagctgatcataa	6	10	3	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	6	132910165	132910165	T	G	SNP	TAAR5	ENST00000258034	human	ensembl	69_37n	-1	known	missense	c.661	p.K221Q	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR5	HGNC	ENSG00000135569	88	0	0	27	9	25	-	-	-	G	132910165	T	G	132910165	3	3	297	1	0	0	0	0	1	0	0	0	15583	1792	62	5	356	5	TAAR5	6	132910165	Missense_Mutation	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	61666648	132910165	38204902	46	33555										
ARID1B	0	genome.wustl.edu	37	chr6	157099194	157099195	+	Frame_Shift_Del	DEL	CA	CA	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctcctcctcctccgcggcggCagcggcggcatcctcttcct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	6	157099194	157099195	CA	-	DEL	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	frame_shift_del	c.131_132	p.A44fs	0.995:0.994	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	24	0	0	6	2	25	-	-	-	-	157099195	CA	-	157099194	7	5	297	1	0	1	0	1	0	0	0	0	916	710	25	0	133	0	ARID1B	6	157099194	Frame_Shift_Del	DEL	CA	TCGA-AN-A0FX-01A-11W-A050-09	24189029	157099194	14015873	47	33556										
GPNMB	0	genome.wustl.edu	37	chr7	23300153	23300153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aaccttcctcaaagatctccCcattatgtttgatgtcctga	5	12	2	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	23300153	23300153	C	T	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	missense	c.779	p.P260L	1.000	superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	167	0	0	116	58	33.33	-	-	-	T	23300153	C	T	23300153	3	4	297	1	0	0	0	0	1	0	0	0	6670	623	22	4	801	4	GPNMB	7	23300153	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		23300153	135838510	48	33557										
NFE2L3	0	genome.wustl.edu	37	chr7	26224471	26224471	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aagacctactgtatgaccttGacataaatatatttgatgag	7	6	0	5			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	26224471	26224471	G	A	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.1153	p.D385N	0.991	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	111	0	0	47	7	12.96	-	-	-	A	26224471	G	A	26224471	3	1	297	1	0	0	0	0	1	0	0	0	10441	1290	45	2	1167	2	NFE2L3	7	26224471	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	2924318	26224471	132914192	49	33558										
NPC1L1	0	genome.wustl.edu	37	chr7	44578657	44578657	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtgccgcagcctctcctgcaGctctagcagctccagcagca	10	17	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	44578657	44578657	G	A	SNP	NPC1L1	ENST00000289547	human	ensembl	69_37n	-1	known	silent	c.1339	p.L447	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	90	0	0	46	6	11.32	-	-	-	A	44578657	G	A	44578657	2	1	297	1	0	0	0	0	0	0	0	1	10643	962	34	4		4	NPC1L1	7	44578657	Silent	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	18354186	44578657	114560006	50	33559										
KRIT1	0	genome.wustl.edu	37	chr7	91844024	91844024	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gcttagcatcaggagctgtaTaaaagcccttcaataaatta	7	8	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	91844024	91844024	T	A	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.1631	p.Y544F	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	133	0	0	50	17	25.37	-	-	-	A	91844024	T	A	91844024	3	1	297	1	0	0	0	0	1	0	0	0	8498	1406	49	5	599	5	KRIT1	7	91844024	Missense_Mutation	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	47265367	91844024	67294639	51	33560										
TFPI2	0	genome.wustl.edu	37	chr7	93516633	93516633	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gttattgtcattccctccacAgccagtataggtgaaagcat	8	10	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	93516633	93516633	A	C	SNP	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	missense	c.571	p.C191G	1.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	102	1	0.97	26	11	29.73	-	-	-	C	93516633	A	C	93516633	3	2	297	1	0	0	0	0	1	0	0	0	15904	188	7	5	144	5	TFPI2	7	93516633	Missense_Mutation	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	1672609	93516633	65622030	52	33561										
MBLAC1	0	genome.wustl.edu	37	chr7	99725323	99725324	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gcgctggcggggcagggcgtINSggccccgggagacgtgacgc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	99725323	99725324	-	G	INS	MBLAC1	ENST00000398075	human	ensembl	69_37n	1	known	frame_shift_ins	c.305_306	p.A103fs	1.000:1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	MBLAC1	HGNC	ENSG00000214309	24	0	0	7	2	22.22	-	-	-	G	99725324	-	G	99725323	7	5	297	1	0	1	1	0	0	0	0	0	9422	1696	59	0	307	0	MBLAC1	7	99725323	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	6208690	99725323	59413340	53	33562										
FLNC	0	genome.wustl.edu	37	chr7	128491563	128491563	+	Frame_Shift_Del	DEL	A	A	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggcagagatcacctgtaaggAcaacaaggatggcacctgca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	128491563	128491563	A	-	DEL	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	frame_shift_del	c.5723	p.D1908fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	67	0	0	32	13	28.26	-	-	-	-	128491563	A	-	128491563	7	5	297	1	0	1	0	1	0	0	0	0	5981	275	10	0	5861	0	FLNC	7	128491563	Frame_Shift_Del	DEL	A	TCGA-AN-A0FX-01A-11W-A050-09	28766240	128491563	30647100	54	33563										
KIAA1549	0	genome.wustl.edu	37	chr7	138604164	138604164	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggagtataaagaaaggttgtGctgttccggagagagctcat	14	5	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	138604164	138604164	G	C	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.208	p.H70D	0.968	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	129	0	0	67	75	52.08	-	-	-	C	138604164	G	C	138604164	3	2	297	1	0	0	0	0	1	0	0	0	8296	1319	46	4	5720	4	KIAA1549	7	138604164	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	10112601	138604164	20534499	55	33564										
AGK	0	genome.wustl.edu	37	chr7	141311049	141311049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aactgatggaaaacacggatGtgatcattgttgcaggagga	13	5	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	141311049	141311049	G	A	SNP	AGK	ENST00000355413	human	ensembl	69_37n	1	known	missense	c.352	p.V118M	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	467	0	0	342	46	11.79	-	-	-	A	141311049	G	A	141311049	3	1	297	1	0	0	0	0	1	0	0	0	383	1377	48	4	370	4	AGK	7	141311049	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	2706885	141311049	17827614	56	33565										
GIMAP7	0	genome.wustl.edu	37	chr7	150217085	150217085	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggctgagagtgaggaccgctCcctgaggatcgttctggtag	16	9	1	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	150217085	150217085	C	A	SNP	GIMAP7	ENST00000313543	human	ensembl	69_37n	1	known	missense	c.23	p.S8Y	0.001	NULL	pfam_AIG1	-	no_errors	GIMAP7	HGNC	ENSG00000179144	74	0	0	16	21	56.76	-	-	-	A	150217085	C	A	150217085	3	1	297	1	0	0	0	0	1	0	0	0	6436	855	30	2	25	2	GIMAP7	7	150217085	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	8906036	150217085	8921578	57	33566										
ESYT2	0	genome.wustl.edu	37	chr7	158529792	158529792	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gacacgtgtgttttcctcctTcctgaccgcctcttgtctgg	9	14	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	7	158529792	158529792	T	G	SNP	ESYT2	ENST00000251527	human	ensembl	69_37n	-1	known	silent	c.2427	p.G809	0.995	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	ESYT2	HGNC	ENSG00000117868	298	0	0	70	35	31.82	-	-	-	G	158529792	T	G	158529792	2	3	297	1	0	0	0	0	0	0	0	1	5302	1770	62	5		5	ESYT2	7	158529792	Silent	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	8312707	158529792	608871	58	33567										
XPO7	0	genome.wustl.edu	37	chr8	21862535	21862535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaacctgtcagcattccgtcGagaagtcaacgactcaatga	9	11	3	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	8	21862535	21862535	G	A	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	missense	c.3227	p.R1076Q	1.000	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	124	0	0	39	19	32.76	-	-	-	A	21862535	G	A	21862535	3	1	297	1	0	0	0	0	1	0	0	0	17546	1058	37	1	3362	1	XPO7	8	21862535	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		21862535	124501487	59	33568										
CSPP1	0	genome.wustl.edu	37	chr8	67986496	67986496	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agaatctgcaaaatggctgaTaatttggatgaatttattga	9	3	1	4			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	8	67986496	67986496	T	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.117	p.D39	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	145	0	0	105	24	18.46	-	-	-	C	67986496	T	C	67986496	2	2	297	1	0	0	0	0	0	0	0	1	3994	1403	49	5		5	CSPP1	8	67986496	Silent	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	46123961	67986496	78377526	60	33569										
RPL7	0	genome.wustl.edu	37	chr8	74205837	74205837	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaccagaagcaactcactctAcaccctccatggttccagcc	6	17	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	8	74205837	74205837	A	C	SNP	RPL7	ENST00000352983	human	ensembl	69_37n	-1	known	missense	c.11	p.V4G	0.000	NULL	pfam_Ribosomal_L30_N,pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	-	no_errors	RPL7	HGNC	ENSG00000147604	110	0	0	70	13	15.66	-	-	-	C	74205837	A	C	74205837	3	2	297	1	0	0	0	0	1	0	0	0	13685	391	14	5	759	5	RPL7	8	74205837	Missense_Mutation	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	6219341	74205837	72158185	61	33570										
CNTLN	0	genome.wustl.edu	37	chr9	17236550	17236550	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aggaagcaggaagcacatttGagaaaagaaaaatatagcac	10	5	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	17236550	17236550	G	C	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.813	p.L271F	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	281	0	0	81	149	64.78	-	-	-	C	17236550	G	C	17236550	3	2	297	1	0	0	0	0	1	0	0	0	3669	1281	45	2	831	2	CNTLN	9	17236550	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		17236550	123976881	62	33571										
SMC2	0	genome.wustl.edu	37	chr9	106880574	106880574	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aatatggataatgccaaaaaAgtggcctttgataagaggat	10	4	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	106880574	106880574	A	G	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	silent	c.1914	p.K638	1.000	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	125	0	0	43	29	40.28	-	-	-	G	106880574	A	G	106880574	2	3	297	1	0	0	0	0	0	0	0	1	14872	69	3	5		5	SMC2	9	106880574	Silent	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	89644024	106880574	34332857	63	33572										
ACTL7B	0	genome.wustl.edu	37	chr9	111617204	111617205	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	acacagtagcacgttggcggINSccatctcctccttgaagccc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	111617204	111617205	-	C	INS	ACTL7B	ENST00000374667	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1007_1006	p.A336fs	0.906:0.990	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7B	HGNC	ENSG00000148156	17	0	0	4	2	33.33	-	-	-	C	111617205	-	C	111617204	7	5	297	1	0	1	1	0	0	0	0	0	201	1203	42	0	244	0	ACTL7B	9	111617204	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	4736630	111617204	29596227	64	33573										
GSN	0	genome.wustl.edu	37	chr9	124062266	124062267	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggcgggggcgccccaggggcINSgggtgcccgaggcgcgggtg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	124062266	124062267	-	G	INS	GSN	ENST00000373818	human	ensembl	69_37n	1	known	frame_shift_ins	c.127_128	p.V44fs	0.061:0.048	NULL	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180	57	0	0	17	4	19.05	-	-	-	G	124062267	-	G	124062266	7	5	297	1	0	1	1	0	0	0	0	0	6876	759	27	0	129	0	GSN	9	124062266	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	12445062	124062266	17151165	65	33574										
STOM	0	genome.wustl.edu	37	chr9	124103484	124103484	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agcgctcatctctacactagCctagatggctgtgttttgcc	9	12	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	124103484	124103484	C	G	SNP	STOM	ENST00000286713	human	ensembl	69_37n	-1	known	missense	c.863	p.G288A	0.007	NULL	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOM	HGNC	ENSG00000148175	122	0	0	58	31	34.44	-	-	-	G	124103484	C	G	124103484	3	3	297	1	0	0	0	0	1	0	0	0	15403	739	26	4	7	4	STOM	9	124103484	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	41218	124103484	17109947	66	33575										
OR1J2	0	genome.wustl.edu	37	chr9	125273997	125273997	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggcccttgggaaactcttcaGtagagcaacatttttctctt	8	10	3	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	125273997	125273997	G	T	SNP	OR1J2	ENST00000335302	human	ensembl	69_37n	1	known	missense	c.917	p.S306I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J2	HGNC	ENSG00000197233	118	0	0	51	29	36.25	-	-	-	T	125273997	G	T	125273997	3	4	297	1	0	0	0	0	1	0	0	0	11033	1029	36	4	919	4	OR1J2	9	125273997	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	1170513	125273997	15939434	67	33576										
EHMT1	0	genome.wustl.edu	37	chr9	140729314	140729315	+	Frame_Shift_Ins	INS	-	-	A													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgccggcactcgagcgcggcINScctggcccagcgtcaggcca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	140729314	140729315	-	A	INS	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	frame_shift_ins	c.3806_3807	p.L1270fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	15	0	0	3	3	50	-	-	-	A	140729315	-	A	140729314	7	5	297	1	0	1	1	0	0	0	0	0	5018	739	26	0	3961	0	EHMT1	9	140729314	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	15455317	140729314	484117	68	33577										
CACNA1B	0	genome.wustl.edu	37	chr9	140943756	140943756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtcagtggcgccctggtggcGtttgctttctcgtaagtaac	13	10	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	9	140943756	140943756	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	silent	c.3702	p.A1234	0.125	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	322	0	0	254	66	20.31	-	-	-	A	140943756	G	A	140943756	2	1	297	1	0	0	0	0	0	0	0	1	2564	1132	40	1		1	CACNA1B	9	140943756	Silent	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	214442	140943756	269675	69	33578										
FBXO18	0	genome.wustl.edu	37	chr10	5948163	5948163	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tgtgcactgcctcaggaaggCagtgcagggccgggctcacc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	5948163	5948163	C	-	DEL	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	frame_shift_del	c.474	p.S159fs	0.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	66	0	0	15	2	11.11	-	-	-	-	5948163	C	-	5948163	7	5	297	1	0	1	0	1	0	0	0	0	5777	697	25	0	493	0	FBXO18	10	5948163	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09		5948163	129586584	70	33579										
ATP5C1	0	genome.wustl.edu	37	chr10	7839114	7839114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctgagagagagctgaaaccaGctcgaatatatggattggga	13	6	0	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	7839114	7839114	G	T	SNP	ATP5C1	ENST00000356708	human	ensembl	69_37n	1	known	missense	c.196	p.A66S	1.000	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,tigrfam_ATPase_F1-cplx_gsu	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	-	no_errors	ATP5C1	HGNC	ENSG00000165629	135	0	0	67	41	37.96	-	-	-	T	7839114	G	T	7839114	3	4	297	1	0	0	0	0	1	0	0	0	1153	971	34	4	206	4	ATP5C1	10	7839114	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	1890951	7839114	127695633	71	33580										
ALOX5	0	genome.wustl.edu	37	chr10	45941043	45941044	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ccgcaagaacctcgaggccaINSttgtcagcgtgattgctgag							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	45941043	45941044	-	C	INS	ALOX5	ENST00000374391	human	ensembl	69_37n	1	known	frame_shift_ins	c.1933_1934	p.I645fs	0.999:1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX5	HGNC	ENSG00000012779	57	0	0	31	14	31.11	-	-	-	C	45941044	-	C	45941043	7	5	297	1	0	1	1	0	0	0	0	0	540	217	8	0	1987	0	ALOX5	10	45941043	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	38101929	45941043	89593704	72	33581										
UNC5B	0	genome.wustl.edu	37	chr10	73050830	73050830	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	catctgctgccctgactggtGgtttccaccccgtcaacttt	8	15	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	73050830	73050830	G	C	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	missense	c.1258	p.G420R	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	75	0	0	38	14	26.92	-	-	-	C	73050830	G	C	73050830	3	2	297	1	0	0	0	0	1	0	0	0	17089	1348	47	4	1292	4	UNC5B	10	73050830	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	27109787	73050830	62483917	73	33582										
DNAJC9	0	genome.wustl.edu	37	chr10	75003261	75003261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aattgtccatttccttttgcCgatccttttgtctgctctgt	6	11	2	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	75003261	75003261	C	G	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.680	p.R227P	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	148	0	0	68	10	12.82	-	-	-	G	75003261	C	G	75003261	3	3	297	1	0	0	0	0	1	0	0	0	4691	652	23	3	106	3	DNAJC9	10	75003261	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	1952431	75003261	60531486	74	33583										
MYOF	0	genome.wustl.edu	37	chr10	95169434	95169435	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtcccaactggccccttgggINScccagggcccctgactgcat							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	95169434	95169435	-	C	INS	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	frame_shift_ins	c.496_495	p.P165fs	0.120:0.025	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	131	0	0	39	8	17.02	-	-	-	C	95169435	-	C	95169434	7	5	297	1	0	1	1	0	0	0	0	0	10161	1203	42	0	5885	0	MYOF	10	95169434	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	20166173	95169434	40365313	75	33584										
ZRANB1	0	genome.wustl.edu	37	chr10	126662834	126662834	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctacacgtttggacagtcgaCtgtatgcactttggaaccgg	11	10	0	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	126662834	126662834	C	G	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.1294	p.L432V	0.980	pfscan_OTU	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	175	0	0	105	35	25	-	-	-	G	126662834	C	G	126662834	3	3	297	1	0	0	0	0	1	0	0	0	18315	564	20	4	1312	4	ZRANB1	10	126662834	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	31493400	126662834	8871913	76	33585										
DHX32	0	genome.wustl.edu	37	chr10	127527584	127527584	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tctcacctgcataaagtaacCggacagaagagctttcttta	7	10	2	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	10	127527584	127527584	C	G	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	missense	c.1867	p.G623R	0.999	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	92	0	0	57	18	23.38	-	-	-	G	127527584	C	G	127527584	3	3	297	1	0	0	0	0	1	0	0	0	4541	652	23	3	376	3	DHX32	10	127527584	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	864750	127527584	8007163	77	33586										
PHRF1	0	genome.wustl.edu	37	chr11	608125	608125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggtggagagcatctttggtaCagagcccgaaccccctctcg	12	13	2	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	608125	608125	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	missense	c.2669	p.T890I	0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	10	0	0	1	4	80	-	-	-	T	608125	C	T	608125	3	4	297	1	0	0	0	0	1	0	0	0	11935	478	17	4	2716	4	PHRF1	11	608125	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		608125	134398391	78	33587										
MUC2	0	genome.wustl.edu	37	chr11	1092499	1092499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	caccaaccaccacccccagcCctccaataaccaccacgacc	2	24	0	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	1092499	1092499	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.4318	p.P1440S	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	157	1	0.63	104	18	14.75	-	-	-	T	1092499	C	T	1092499	3	4	297	1	0	0	0	0	1	0	0	0	10047	623	22	4	4436	4	MUC2	11	1092499	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	484374	1092499	133914017	79	33588										
SF3B2	0	genome.wustl.edu	37	chr11	65824744	65824745	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cccgtctcttagtagctgctINSccagtgggcccagtgggccc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	65824744	65824745	-	C	INS	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	frame_shift_ins	c.675_676	p.V226fs	0.971:0.998	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	48	0	0	13	2	13.33	-	-	-	C	65824745	-	C	65824744	7	5	297	1	0	1	1	0	0	0	0	0	14239	1538	54	0	701	0	SF3B2	11	65824744	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	64732245	65824744	69181772	80	33589										
INPPL1	0	genome.wustl.edu	37	chr11	71939422	71939422	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtgtgcctgtgcgccgcttcCagaccctgggtgagctcatc	13	14	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	71939422	71939422	C	T	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	nonsense	c.277	p.Q93*	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	99	0	0	51	15	22.73	-	-	-	T	71939422	C	T	71939422	4	4	297	1	0	0	0	0	0	1	0	0	7815	595	21	4	287	4	INPPL1	11	71939422	Nonsense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	6114678	71939422	63067094	81	33590										
FAT3	0	genome.wustl.edu	37	chr11	92085295	92085296	+	Frame_Shift_Ins	INS	-	-	A													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtgatggatataattatgggINSacactgtgtgggcacacggc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	92085295	92085296	-	A	INS	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_ins	c.17_18	p.H7fs	1.000:0.949	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	40	0	0	38	5	11.63	-	-	-	A	92085296	-	A	92085295	7	5	297	1	0	1	1	0	0	0	0	0	5737	1174	41	0	19	0	FAT3	11	92085295	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	20145873	92085295	42921221	82	33591	272	2								
FAT3	0	genome.wustl.edu	37	chr11	92085300	92085301	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggatataattatgggacactINSgtgtgggcacacggcctcct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	11	92085300	92085301	-	G	INS	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_ins	c.22_23	p.C8fs	0.997:1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	43	0	0	40	5	11.11	-	-	-	G	92085301	-	G	92085300	7	5	297	1	0	1	1	0	0	0	0	0	5737	1580	55	0	24	0	FAT3	11	92085300	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	5	92085300	42921216	83	33592	272	2								
ERBB3	0	genome.wustl.edu	37	chr12	56486553	56486553	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	acccctggcacaagatccctGccctggacccagagaagctc	9	17	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	12	56486553	56486553	G	C	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1132	p.A378P	0.993	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	70	0	0	18	37	67.27	-	-	-	C	56486553	G	C	56486553	3	2	297	1	0	0	0	0	1	0	0	0	5245	1319	46	4	1301	4	ERBB3	12	56486553	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		56486553	77365342	84	33593										
ATP2B1	0	genome.wustl.edu	37	chr12	89996873	89996873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaagatggcattgttaaagaTtccttcgaatacatttcttt	7	6	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	12	89996873	89996873	T	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.3007	p.I1003V	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	240	0	0	101	73	41.71	-	-	-	C	89996873	T	C	89996873	3	2	297	1	0	0	0	0	1	0	0	0	1143	1493	52	5	829	5	ATP2B1	12	89996873	Missense_Mutation	SNP	T	TCGA-AN-A0FX-01A-11W-A050-09	33510320	89996873	43855022	85	33594										
ALDH2	0	genome.wustl.edu	37	chr12	112229881	112229882	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cagattggccgcgtaatccaINSggttgctgctgggagcagca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	12	112229881	112229882	-	G	INS	ALDH2	ENST00000261733	human	ensembl	69_37n	1	known	frame_shift_ins	c.812_813	p.V272fs	1.000:0.988	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275	51	0	0	16	2	11.11	-	-	-	G	112229882	-	G	112229881	7	5	297	1	0	1	1	0	0	0	0	0	496	188	7	0	842	0	ALDH2	12	112229881	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	22233008	112229881	21622014	86	33595										
DTX1	0	genome.wustl.edu	37	chr12	113496004	113496004	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aggcagtggcggccatgtcaCggccaggccacggtgggctg	18	12	1	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	12	113496004	113496004	C	G	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	missense	c.7	p.R3G	0.993	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	24	0	0	3	5	62.5	-	-	-	G	113496004	C	G	113496004	3	3	297	1	0	0	0	0	1	0	0	0	4828	527	19	3	9	3	DTX1	12	113496004	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	1266123	113496004	20355891	87	33596										
SPPL3	0	genome.wustl.edu	37	chr12	121202863	121202863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aaggctcagaccacatccgcCggaggtcgccctgggaaaca	12	14	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	12	121202863	121202863	C	T	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	missense	c.1094	p.R365Q	1.000	pfam_Peptidase_A22B_SPP	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	234	0	0	103	25	19.38	-	-	-	T	121202863	C	T	121202863	3	4	297	1	0	0	0	0	1	0	0	0	15181	652	23	1	64	1	SPPL3	12	121202863	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	7706859	121202863	12649032	88	33597										
EFNB2	0	genome.wustl.edu	37	chr13	107187297	107187297	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gcagtacttccacacggagtCccttctcacagccatggcga	9	15	1	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	13	107187297	107187297	C	A	SNP	EFNB2	ENST00000245323	human	ensembl	69_37n	-1	known	missense	c.16	p.D6Y	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266	54	0	0	46	24	34.29	-	-	-	A	107187297	C	A	107187297	3	1	297	1	0	0	0	0	1	0	0	0	4991	855	30	2	1005	2	EFNB2	13	107187297	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		107187297	7982581	89	33598										
TEP1	0	genome.wustl.edu	37	chr14	20845601	20845601	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	taccttggggcttagccaggCcagggcggacactgccacat	13	13	0	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	14	20845601	20845601	C	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.5926	p.A1976S	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	56	0	0	18	25	58.14	-	-	-	A	20845601	C	A	20845601	3	1	297	1	0	0	0	0	1	0	0	0	15854	739	26	4	2017	4	TEP1	14	20845601	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		20845601	86503939	90	33599										
RASGRF1	0	genome.wustl.edu	37	chr15	79350823	79350823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tctgtggcgagggtcctgtaGctgtggacagatggacatgg	17	7	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	15	79350823	79350823	G	T	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.384	p.S128R	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	211	1	0.47	86	77	47.24	-	-	-	T	79350823	G	T	79350823	3	4	297	1	0	0	0	0	1	0	0	0	13155	985	34	4	3541	4	RASGRF1	15	79350823	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		79350823	23180569	91	33600										
AKAP13	0	genome.wustl.edu	37	chr15	86122519	86122519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ccttcagagcttgcctgattGtggagtaaagggcacggaag	14	8	1	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	15	86122519	86122519	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.1220	p.C407Y	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	98	0	0	51	14	21.54	-	-	-	A	86122519	G	A	86122519	3	1	297	1	0	0	0	0	1	0	0	0	449	1377	48	4	1242	4	AKAP13	15	86122519	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	6771696	86122519	16408873	92	33601										
ADCY9	0	genome.wustl.edu	37	chr16	4033256	4033257	+	Frame_Shift_Ins	INS	-	-	T													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tggacaccgcgagggacagcINSacctccagcagcagggctgc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	4033256	4033257	-	T	INS	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2496_2495	p.L833fs	1.000:0.998	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	33	0	0	20	5	20	-	-	-	T	4033257	-	T	4033256	7	5	297	1	0	1	1	0	0	0	0	0	301	697	25	0	1585	0	ADCY9	16	4033256	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09		4033256	86321497	93	33602										
MPV17L	0	genome.wustl.edu	37	chr16	15501863	15501863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctgtggttttctctgggccaCcttcatctgtttttcccagc	8	13	3	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	15501863	15501863	C	T	SNP	MPV17L	ENST00000396385	human	ensembl	69_37n	1	known	missense	c.485	p.T162I	1.000	pfam_Mpv17_PMP22	pfam_Mpv17_PMP22	-	no_errors	MPV17L	HGNC	ENSG00000156968	143	0	0	123	27	18	-	-	-	T	15501863	C	T	15501863	3	4	297	1	0	0	0	0	1	0	0	0	9818	507	18	4	499	4	MPV17L	16	15501863	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	11468607	15501863	74852890	94	33603										
ABCC6	0	genome.wustl.edu	37	chr16	16276377	16276377	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggtgggtccagctcctgcccGaagcacacattctctaccac	9	16	1	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	16276377	16276377	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	silent	c.2139	p.F713	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	104	0	0	93	53	36.3	-	-	-	A	16276377	G	A	16276377	2	1	297	1	0	0	0	0	0	0	0	1	57	1049	37	1		1	ABCC6	16	16276377	Silent	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	774514	16276377	74078376	95	33604										
LRRC36	0	genome.wustl.edu	37	chr16	67381482	67381482	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cagtgaaaattttcttttagAggtggaaaaaaggtaagaag	11	2	1	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	67381482	67381482	A	T	SNP	LRRC36	ENST00000329956	human	ensembl	69_37n	1	known	missense	c.476	p.E159V	1.000	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708	135	0	0	79	31	27.93	-	-	-	T	67381482	A	T	67381482	3	4	297	1	0	0	0	0	1	0	0	0	9056	304	11	5	518	5	LRRC36	16	67381482	Missense_Mutation	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	51105105	67381482	22973271	96	33605										
PRMT7	0	genome.wustl.edu	37	chr16	68373740	68373741	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agcagcctgccatagcaggcINSggtttgaacctctgacatct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	68373740	68373741	-	G	INS	PRMT7	ENST00000339507	human	ensembl	69_37n	1	known	frame_shift_ins	c.796_797	p.F267fs	0.999:0.998	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	216	0	0	112	21	15.79	-	-	-	G	68373741	-	G	68373740	7	5	297	1	0	1	1	0	0	0	0	0	12622	759	27	0	822	0	PRMT7	16	68373740	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	992258	68373740	21981013	97	33606										
TMCO7	0	genome.wustl.edu	37	chr16	68936373	68936375	+	In_Frame_Del	DEL	GGT	GGT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agtttagagttgccactcaaGgtggcattatgattaccatc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	68936373	68936375	GGT	-	DEL	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	in_frame_del	c.1633_1635	p.G546in_frame_del	1.000:1.000:0.997	superfamily_ARM-type_fold	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	119	0	0	93	47	33.33	-	-	-	-	68936375	GGT	-	68936373	7	5	297	1	0	1	0	1	0	0	0	0	16096	1000	35	0	1667	0	TMCO7	16	68936373	In_Frame_Del	DEL	GGT	TCGA-AN-A0FX-01A-11W-A050-09	562633	68936373	21418380	98	33607										
PKD1L2	0	genome.wustl.edu	37	chr16	81183417	81183417	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggacgcgggtgaagctgctgCgagcgcagcggctgaagatc	18	10	0	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	16	81183417	81183417	C	G	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	missense	c.4631	p.R1544P	0.998	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	38	0	0	56	14	20	-	-	-	G	81183417	C	G	81183417	3	3	297	1	0	0	0	0	1	0	0	0	12039	768	27	3	2811	3	PKD1L2	16	81183417	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	12247044	81183417	9171336	99	33608										
CAMKK1	0	genome.wustl.edu	37	chr17	3769233	3769233	+	Frame_Shift_Del	DEL	G	G	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcctggagcagacatggatcGctcttccctccgtgcttggg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	3769233	3769233	G	-	DEL	CAMKK1	ENST00000381771	human	ensembl	69_37n	-1	known	frame_shift_del	c.1528	p.R510fs	0.976	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	97	0	0	37	50	55.56	-	-	-	-	3769233	G	-	3769233	7	5	297	1	0	1	0	1	0	0	0	0	2631	1095	38	0	115	0	CAMKK1	17	3769233	Frame_Shift_Del	DEL	G	TCGA-AN-A0FX-01A-11W-A050-09		3769233	77425977	100	33609										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	240	0	0	94	72	43.37	-	-	-	A	7577539	G	A	7577539	3	1	297	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	3808306	7577539	73617671	101	33610										
RAI1	0	genome.wustl.edu	37	chr17	17700773	17700774	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aagccaaagatggaggagctINSgggcctggcctcccagcccc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	17700773	17700774	-	G	INS	RAI1	ENST00000353383	human	ensembl	69_37n	1	known	frame_shift_ins	c.4511_4512	p.L1506fs	0.998:1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	42	0	0	10	2	16.67	-	-	-	G	17700774	-	G	17700773	7	5	297	1	0	1	1	0	0	0	0	0	13090	1580	55	0	4513	0	RAI1	17	17700773	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	10123234	17700773	63494437	102	33611										
MAP2K3	0	genome.wustl.edu	37	chr17	21205521	21205521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agttctaccggaaggtgctgGataaaaacatgacaattcca	9	8	1	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	21205521	21205521	G	T	SNP	MAP2K3	ENST00000342679	human	ensembl	69_37n	1	known	missense	c.466	p.D156Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152	90	0	0	32	8	20	-	-	-	T	21205521	G	T	21205521	3	4	297	1	0	0	0	0	1	0	0	0	9309	1174	41	2	488	2	MAP2K3	17	21205521	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	3504748	21205521	59989689	103	33612										
JUP	0	genome.wustl.edu	37	chr17	39777034	39777035	+	Frame_Shift_Del	DEL	AG	AG	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tctcgcagcgaagctgggccAgctgctcctccacgctgcca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	39777034	39777035	AG	-	DEL	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	frame_shift_del	c.1535_1534	p.L512fs	1.000:1.000	pfam_F,prints_Keratin_I	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	48	0	0	52	48	45.71	-	-	-	-	39777035	AG	-	39777034	7	5	297	1	0	1	0	1	0	0	0	0	8026	188	7	0		0	JUP	17	39777034	Frame_Shift_Del	DEL	AG	TCGA-AN-A0FX-01A-11W-A050-09	18571513	39777034	41418176	104	33613										
DGKE	0	genome.wustl.edu	37	chr17	54912172	54912173	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaagatggaagcggagaggcINSggccggcgccgggctcgccc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	54912172	54912173	-	G	INS	DGKE	ENST00000284061	human	ensembl	69_37n	1	known	frame_shift_ins	c.16_17	p.P7fs	0.464:0.463	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933	36	0	0	11	2	15.38	-	-	-	G	54912173	-	G	54912172	7	5	297	1	0	1	1	0	0	0	0	0	4504	759	27	0	18	0	DGKE	17	54912172	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	15135138	54912172	26283038	105	33614										
TANC2	0	genome.wustl.edu	37	chr17	61457104	61457105	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcacacgttacttgccttctINSggttttcccgccaagaggga							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	17	61457104	61457105	-	G	INS	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	frame_shift_ins	c.2386_2387	p.F797fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	255	0	0	140	17	10.83	-	-	-	G	61457105	-	G	61457104	7	5	297	1	0	1	1	0	0	0	0	0	15637	1580	55	0	2436	0	TANC2	17	61457104	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	6544932	61457104	19738106	106	33615										
AQP4	0	genome.wustl.edu	37	chr18	24436200	24436200	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctgaagacaatacctctccaGattggtctttccccttcttc	5	14	3	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	18	24436200	24436200	G	A	SNP	AQP4	ENST00000383168	human	ensembl	69_37n	-1	known	missense	c.947	p.S316F	0.957	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_Aquaporin	-	no_errors	AQP4	HGNC	ENSG00000171885	191	0	0	85	54	38.85	-	-	-	A	24436200	G	A	24436200	3	1	297	1	0	0	0	0	1	0	0	0	830	942	33	2	28	2	AQP4	18	24436200	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		24436200	53641048	107	33616										
REEP6	0	genome.wustl.edu	37	chr19	1495370	1495371	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	caatctcatcggatttgtgtINSaccccgcatatgcctcgtga							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	1495370	1495371	-	C	INS	REEP6	ENST00000233596	human	ensembl	69_37n	1	known	frame_shift_ins	c.193_194	p.Y65fs	0.995:1.000	pfam_TB2_DP1_HVA22	pfam_TB2_DP1_HVA22	-	no_errors	REEP6	HGNC	ENSG00000115255	22	0	0	35	20	36.36	-	-	-	C	1495371	-	C	1495370	7	5	297	1	0	1	1	0	0	0	0	0	13292	1638	57	0	199	0	REEP6	19	1495370	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09		1495370	57633613	108	33617										
TLE6	0	genome.wustl.edu	37	chr19	2987237	2987238	+	Splice_Site	DEL	GT	GT	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggcaaagcccagagacagacGtgagtgtccctgagggtgag							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	2987237	2987238	GT	-	DEL	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	splice_site_del	c.541+1_541+1	e6+1	0.010:0.007	-	-	-	no_errors	TLE6	HGNC	ENSG00000104953	56	0	0	35	43	55.13	-	-	-	-	2987238	GT	-	2987237	8	5	297	1	0	1	0	1	0	0	1	0	16037	1159	40	0	564	0	TLE6	19	2987237	Splice_Site	DEL	GT	TCGA-AN-A0FX-01A-11W-A050-09	1491867	2987237	56141746	109	33618										
RANBP3	0	genome.wustl.edu	37	chr19	5933438	5933438	+	Frame_Shift_Del	DEL	T	T	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gacctacctgcgctgggggcTtggccgtggatcagcgttgg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	5933438	5933438	T	-	DEL	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	frame_shift_del	c.459	p.A154fs	1.000	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	15	0	0	10	10	50	-	-	-	-	5933438	T	-	5933438	7	5	297	1	0	1	0	1	0	0	0	0	13112	1606	56	0	1292	0	RANBP3	19	5933438	Frame_Shift_Del	DEL	T	TCGA-AN-A0FX-01A-11W-A050-09	2946201	5933438	53195545	110	33619										
CLPP	0	genome.wustl.edu	37	chr19	6368628	6368628	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ttagacaaggttctggtccaCcctccccaggacggtgagga							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	6368628	6368628	C	-	DEL	CLPP	ENST00000245816	human	ensembl	69_37n	1	known	frame_shift_del	c.741	p.P248fs	1.000	NULL	pfam_ClpP/TepA,prints_ClpP	-	no_errors	CLPP	HGNC	ENSG00000125656	38	0	0	29	15	34.09	-	-	-	-	6368628	C	-	6368628	7	5	297	1	0	1	0	1	0	0	0	0	3582	506	18	0	763	0	CLPP	19	6368628	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09	435190	6368628	52760355	111	33620										
ALKBH7	0	genome.wustl.edu	37	chr19	6373002	6373002	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaactggagcccgagctgcgCcgccgccgctacgaatacga							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	6373002	6373002	C	-	DEL	ALKBH7	ENST00000245812	human	ensembl	69_37n	1	known	frame_shift_del	c.171	p.R58fs	0.999	NULL	NULL	-	no_errors	ALKBH7	HGNC	ENSG00000125652	18	0	0	5	10	66.67	-	-	-	-	6373002	C	-	6373002	7	5	297	1	0	1	0	1	0	0	0	0	532	726	26	0	173	0	ALKBH7	19	6373002	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09	4374	6373002	52755981	112	33621										
PAK4	0	genome.wustl.edu	37	chr19	39664407	39664408	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ccgcccctgctgttcctgggINSccccctggcccccgctcacc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	39664407	39664408	-	C	INS	PAK4	ENST00000358301	human	ensembl	69_37n	1	known	frame_shift_ins	c.855_856	p.G287fs	0.016:0.162	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	10	0	0	4	2	33.33	-	-	-	C	39664408	-	C	39664407	7	5	297	1	0	1	1	0	0	0	0	0	11476	1190	42	0	865	0	PAK4	19	39664407	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	33291405	39664407	19464576	113	33622										
CIC	0	genome.wustl.edu	37	chr19	42794462	42794462	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	cccccactggaccctgagccCccagggcccccggatcctcc	9	23	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	42794462	42794462	C	A	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	silent	c.1542	p.P514	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	105	0	0	38	15	28.3	-	-	-	A	42794462	C	A	42794462	2	1	297	1	0	0	0	0	0	0	0	1	3453	610	22	4		4	CIC	19	42794462	Silent	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	3130055	42794462	16334521	114	33623										
PLEKHA4	0	genome.wustl.edu	37	chr19	49360695	49360696	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	taccaataaaaccatggaggINScccgggtcccagggggccgc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	49360695	49360696	-	C	INS	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1031_1030	p.A344fs	1.000:1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	53	0	0	28	4	12.5	-	-	-	C	49360696	-	C	49360695	7	5	297	1	0	1	1	0	0	0	0	0	12132	1203	42	0	1356	0	PLEKHA4	19	49360695	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	6566233	49360695	9768288	115	33624										
POLD1	0	genome.wustl.edu	37	chr19	50912445	50912445	+	Frame_Shift_Del	DEL	G	G	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gtgaagacctcagtgcggaaGgggctgctgccccagatcct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	50912445	50912445	G	-	DEL	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	frame_shift_del	c.1959	p.L655fs	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	87	0	0	19	25	56.82	-	-	-	-	50912445	G	-	50912445	7	5	297	1	0	1	0	1	0	0	0	0	12264	991	35	0	2017	0	POLD1	19	50912445	Frame_Shift_Del	DEL	G	TCGA-AN-A0FX-01A-11W-A050-09	1551750	50912445	8216538	116	33625	273	2								
POLD1	0	genome.wustl.edu	37	chr19	50912454	50912455	+	Frame_Shift_Del	DEL	GC	GC	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tcagtgcggaaggggctgctGccccagatcctggagaacct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	50912454	50912455	GC	-	DEL	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	frame_shift_del	c.1968_1969	p.Q658fs	0.984:1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	84	0	0	22	24	52.17	-	-	-	-	50912455	GC	-	50912454	7	5	297	1	0	1	0	1	0	0	0	0	12264	1306	46	0	2026	0	POLD1	19	50912454	Frame_Shift_Del	DEL	GC	TCGA-AN-A0FX-01A-11W-A050-09	9	50912454	8216529	117	33626	273	2								
NLRP4	0	genome.wustl.edu	37	chr19	56370309	56370309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ggaacaagaaaaactggatgCgttttttggcttccaactgt	10	7	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	19	56370309	56370309	C	T	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	missense	c.1550	p.A517V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	141	0	0	82	31	27.43	-	-	-	T	56370309	C	T	56370309	3	4	297	1	0	0	0	0	1	0	0	0	10551	768	27	1	1556	1	NLRP4	19	56370309	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	5457855	56370309	2758674	118	33627										
SNPH	0	genome.wustl.edu	37	chr20	1276924	1276925	+	Frame_Shift_Ins	INS	-	-	C													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gagaggatgacgtggcctggINScccggccctttctgcgggcc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	20	1276924	1276925	-	C	INS	SNPH	ENST00000381867	human	ensembl	69_37n	1	known	frame_shift_ins	c.41_42	p.A16fs	0.967:0.968	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298	70	0	0	15	2	11.76	-	-	-	C	1276925	-	C	1276924	7	5	297	1	0	1	1	0	0	0	0	0	14939	1218	42	0		0	SNPH	20	1276924	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09		1276924	61748596	119	33628										
SDCBP2	0	genome.wustl.edu	37	chr20	1293243	1293243	+	Frame_Shift_Del	DEL	A	A	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctactcacctgtcccgaaccAccacgacaatcttatcgcct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	20	1293243	1293243	A	-	DEL	SDCBP2	ENST00000339987	human	ensembl	69_37n	-1	known	frame_shift_del	c.548	p.V183fs	0.981	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775	46	0	0	53	68	54.84	-	-	-	-	1293243	A	-	1293243	7	5	297	1	0	1	0	1	0	0	0	0	14044	159	6	0	346	0	SDCBP2	20	1293243	Frame_Shift_Del	DEL	A	TCGA-AN-A0FX-01A-11W-A050-09	16319	1293243	61732277	120	33629										
VPS16	0	genome.wustl.edu	37	chr20	2843348	2843348	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agccagacatgcagaagagtCtgctcagggttggcctggat	14	9	2	3			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	20	2843348	2843348	C	A	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	missense	c.1195	p.L399M	1.000	pfam_Vps16_N,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	19	0	0	13	19	59.38	-	-	-	A	2843348	C	A	2843348	3	1	297	1	0	0	0	0	1	0	0	0	17290	912	32	2	1241	2	VPS16	20	2843348	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	1550105	2843348	60182172	121	33630										
TTPAL	0	genome.wustl.edu	37	chr20	43115317	43115317	+	Frame_Shift_Del	DEL	C	C	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gcatttttgccatcataaaaCcatttctaaaggagaaaata							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	20	43115317	43115317	C	-	DEL	TTPAL	ENST00000262605	human	ensembl	69_37n	1	known	frame_shift_del	c.721	p.P241fs	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	133	0	0	140	149	51.38	-	-	-	-	43115317	C	-	43115317	7	5	297	1	0	1	0	1	0	0	0	0	16834	507	18	0	731	0	TTPAL	20	43115317	Frame_Shift_Del	DEL	C	TCGA-AN-A0FX-01A-11W-A050-09	40271969	43115317	19910203	122	33631										
LAMA5	0	genome.wustl.edu	37	chr20	60902623	60902624	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gagctccggcagcgctccgtINSggccccaaagcagaagcagc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	20	60902623	60902624	-	G	INS	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4900_4899	p.T1633fs	1.000:1.000	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	15	0	0	2	2	50	-	-	-	G	60902624	-	G	60902623	7	5	297	1	0	1	1	0	0	0	0	0	8663	1696	59	0	6363	0	LAMA5	20	60902623	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	17787306	60902623	2122897	123	33632										
PCNT	0	genome.wustl.edu	37	chr21	47810717	47810717	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	aggagagcgcagcaaaggcaGagctggcgctggagctgcac	17	10	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	21	47810717	47810717	G	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.3973	p.E1325Q	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	74	0	0	41	15	26.79	-	-	-	C	47810717	G	C	47810717	3	2	297	1	0	0	0	0	1	0	0	0	11663	943	33	2	4051	2	PCNT	21	47810717	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		47810717	319178	124	33633										
LIF	0	genome.wustl.edu	37	chr22	30639798	30639798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gctgcacaggcggcacagcaCgttgctaaggaggcctcgca	14	13	0	0			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	22	30639798	30639798	C	T	SNP	LIF	ENST00000249075	human	ensembl	69_37n	-1	known	missense	c.451	p.V151M	1.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin,prints_Leukemia_IF	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin,prints_Leukemia_IF	-	no_errors	LIF	HGNC	ENSG00000128342	277	1	0.36	97	61	38.36	-	-	-	T	30639798	C	T	30639798	3	4	297	1	0	0	0	0	1	0	0	0	8834	536	19	1	161	1	LIF	22	30639798	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09		30639798	20664768	125	33634										
PIK3IP1	0	genome.wustl.edu	37	chr22	31685527	31685528	+	Frame_Shift_Ins	INS	-	-	A													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tccttggagttcatccgcacINSccgctggctgatcccaatca							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	22	31685527	31685528	-	A	INS	PIK3IP1	ENST00000215912	human	ensembl	69_37n	-1	known	frame_shift_ins	c.466_465	p.V155fs	1.000:0.507	NULL	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	-	no_errors	PIK3IP1	HGNC	ENSG00000100100	29	0	0	19	17	47.22	-	-	-	A	31685528	-	A	31685527	7	5	297	1	0	1	1	0	0	0	0	0	11991	507	18	0	337	0	PIK3IP1	22	31685527	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	1045729	31685527	19619039	126	33635										
ADSL	0	genome.wustl.edu	37	chr22	40742592	40742593	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gaggcgatcatggttcgcccINSgacagctaccgctcacctct							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	22	40742592	40742593	-	G	INS	ADSL	ENST00000454266	human	ensembl	69_37n	1	known	frame_shift_ins	c.30_31	p.D10fs	0.003:0.842	NULL	pfam_Lyase1_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,prints_D_crystallin,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900	30	0	0	31	23	42.59	-	-	-	G	40742593	-	G	40742592	7	5	297	1	0	1	1	0	0	0	0	0	346	639	23	0	32	0	ADSL	22	40742592	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	9057065	40742592	10561974	127	33636										
TTC38	0	genome.wustl.edu	37	chr22	46671227	46671227	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	tggccctgaaattttcccatGatgcttatttttacctgggc	8	10	0	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	22	46671227	46671227	G	T	SNP	TTC38	ENST00000381031	human	ensembl	69_37n	1	novel	missense	c.448	p.D150Y	1.000	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	106	0	0	62	34	35.42	-	-	-	T	46671227	G	T	46671227	3	4	297	1	0	0	0	0	1	0	0	0	16803	1290	45	2	466	2	TTC38	22	46671227	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	5928635	46671227	4633339	128	33637										
CELSR1	0	genome.wustl.edu	37	chr22	46806305	46806305	+	Frame_Shift_Del	DEL	G	G	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ccacccgtaccttcccgggtGccattgttggcgatgaatcc							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	22	46806305	46806305	G	-	DEL	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	frame_shift_del	c.4923	p.T1642fs	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	34	0	0	16	7	30.43	-	-	-	-	46806305	G	-	46806305	7	5	297	1	0	1	0	1	0	0	0	0	3250	1306	46	0	4237	0	CELSR1	22	46806305	Frame_Shift_Del	DEL	G	TCGA-AN-A0FX-01A-11W-A050-09	135078	46806305	4498261	129	33638										
NLGN4X	0	genome.wustl.edu	37	chrX	5811009	5811009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	taagtgggatgtcatctggcGaccggcgcagcgtgagggtg	18	8	2	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	5811009	5811009	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.2360	p.S787L	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	397	0	0	105	134	55.83	-	-	-	A	5811009	G	A	5811009	3	1	297	1	0	0	0	0	1	0	0	0	10536	1059	37	1	154	1	NLGN4X	23	5811009	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09		5811009	149459551	130	33639										
FAM47C	0	genome.wustl.edu	37	chrX	37026498	37026498	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gccaccatgggggaccagagGccgcaggaccggcccagttc	15	15	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	37026498	37026498	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	silent	c.15	p.R5	0.005	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	83	0	0	37	8	17.78	-	-	-	A	37026498	G	A	37026498	2	1	297	1	0	0	0	0	0	0	0	1	5617	1194	42	4		4	FAM47C	23	37026498	Silent	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	31215489	37026498	118244062	131	33640										
AKAP4	0	genome.wustl.edu	37	chrX	49957911	49957911	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agtcagtgacttgcatgggtCtgatttcattttgcctttgt	10	7	3	2			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	49957911	49957911	C	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1453	p.D485Y	0.049	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	195	0	0	104	53	33.76	-	-	-	A	49957911	C	A	49957911	3	1	297	1	0	0	0	0	1	0	0	0	453	913	32	2	1119	2	AKAP4	23	49957911	Missense_Mutation	SNP	C	TCGA-AN-A0FX-01A-11W-A050-09	12931413	49957911	105312649	132	33641										
RGAG1	0	genome.wustl.edu	37	chrX	109694015	109694015	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agtctcaacttcagcctcagAccctggagggacatccacac	8	15	3	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	109694015	109694015	A	G	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.170	p.D57G	0.716	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	322	0	0	101	30	22.73	-	-	-	G	109694015	A	G	109694015	3	3	297	1	0	0	0	0	1	0	0	0	13357	275	10	5	172	5	RGAG1	23	109694015	Missense_Mutation	SNP	A	TCGA-AN-A0FX-01A-11W-A050-09	59736104	109694015	45576545	133	33642										
MTM1	0	genome.wustl.edu	37	chrX	149814336	149814336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	gacccagcgtaaatgcagtgGccaacaaggtgagtggactt	13	9	0	1			TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	149814336	149814336	G	A	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.859	p.A287T	1.000	pfam_Myotub-related	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	150	1	0.66	98	12	10.81	-	-	-	A	149814336	G	A	149814336	3	1	297	1	0	0	0	0	1	0	0	0	10009	1203	42	4	889	4	MTM1	23	149814336	Missense_Mutation	SNP	G	TCGA-AN-A0FX-01A-11W-A050-09	40120321	149814336	5456224	134	33643										
ARHGAP4	0	genome.wustl.edu	37	chrX	153173249	153173250	+	Frame_Shift_Ins	INS	-	-	G													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	agggtgaggctggggccccaINSgggccccgggagaagccttt							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	153173249	153173250	-	G	INS	ARHGAP4	ENST00000350060	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2775_2774	p.G926fs	0.000:0.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP4	HGNC	ENSG00000089820	43	0	0	26	6	18.75	-	-	-	G	153173250	-	G	153173249	7	5	297	1	0	1	1	0	0	0	0	0	887	175	7	0	69	0	ARHGAP4	23	153173249	Frame_Shift_Ins	INS	-	TCGA-AN-A0FX-01A-11W-A050-09	3358913	153173249	2097311	135	33644										
PLXNA3	0	genome.wustl.edu	37	chrX	153693388	153693389	+	Frame_Shift_Del	DEL	GA	GA	-													0.0381679389312977	5	0.98084598061592	0.8	1.33333333333333	0.5	1	1	0	ctgagatcctgcccagtgggGacctcctgatccccgttggg							TCGA-AN-A0FX-01A-11W-A050-09	TCGA-AN-A0FX-10A-01W-A055-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2523cf22-1a16-42be-8560-833ed2031e3c	c87dc746-b04b-4b8e-af6a-ac51f04e3d6a	X	153693388	153693389	GA	-	DEL	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	frame_shift_del	c.2071_2072	p.D691fs	1.000:1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	25	0	0	15	8	33.33	-	-	-	-	153693389	GA	-	153693388	7	5	297	1	0	1	0	1	0	0	0	0	12195	1174	41	0	2109	0	PLXNA3	23	153693388	Frame_Shift_Del	DEL	GA	TCGA-AN-A0FX-01A-11W-A050-09	520139	153693388	1577172	136	33645										
TEKT2	0	genome.wustl.edu	37	chr1	36553575	36553575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tgtcaatgtccttccctaggGacgcactggacgccctgtgc	11	14	1	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	1	36553575	36553575	G	A	SNP	TEKT2	ENST00000207457	human	ensembl	69_37n	1	known	missense	c.1081	p.D361N	0.997	pfam_Tektin,superfamily_Prefoldin	pfam_Tektin,superfamily_Prefoldin,prints_Tektin	-	no_errors	TEKT2	HGNC	ENSG00000092850	26	0	0	14	4	22.22	-	-	-	A	36553575	G	A	36553575	3	1	298	1	0	0	0	0	1	0	0	0	15848	1188	41	2	1115	2	TEKT2	1	36553575	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		36553575	212697046	1	33646										
TTC22	0	genome.wustl.edu	37	chr1	55253434	55253434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	cttgccggagtagggccagcGtgcggttgaaggcaggcagt	18	9	0	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	1	55253434	55253434	G	A	SNP	TTC22	ENST00000371276	human	ensembl	69_37n	-1	known	missense	c.689	p.T230M	0.976	NULL	smart_TPR_repeat	-	no_errors	TTC22	HGNC	ENSG00000006555	86	0	0	120	31	20.53	-	-	-	A	55253434	G	A	55253434	3	1	298	1	0	0	0	0	1	0	0	0	16786	1145	40	1	1143	1	TTC22	1	55253434	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	18699859	55253434	193997187	2	33647										
CR1	0	genome.wustl.edu	37	chr1	207726127	207726127	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	taaaactcctccagatccagTgaatggcatggtgcatgtga	10	9	0	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	1	207726127	207726127	T	G	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.3032	p.V1011G	0.003	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	182	0	0	106	17	13.71	-	-	-	G	207726127	T	G	207726127	3	3	298	1	0	0	0	0	1	0	0	0	3870	1696	59	5	3106	5	CR1	1	207726127	Missense_Mutation	SNP	T	TCGA-AN-A0FY-01A-11W-A050-09	152472693	207726127	41524494	3	33648										
NBAS	0	genome.wustl.edu	37	chr2	15374721	15374721	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctgcactatatccttgggtgAgatgtcaagagggccaactg	12	9	1	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	15374721	15374721	A	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6094	p.S2032T	0.680	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	106	0	0	60	22	26.83	-	-	-	T	15374721	A	T	15374721	3	4	298	1	0	0	0	0	1	0	0	0	10258	304	11	5	1049	5	NBAS	2	15374721	Missense_Mutation	SNP	A	TCGA-AN-A0FY-01A-11W-A050-09		15374721	227824652	4	33649										
DTNB	0	genome.wustl.edu	37	chr2	25611152	25611152	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ggtgggggtggagccggcagAcgtggagcgcactggcatgg	22	8	0	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	25611152	25611152	A	G	SNP	DTNB	ENST00000406818	human	ensembl	69_37n	-1	known	missense	c.1654	p.S552P	0.992	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNB	HGNC	ENSG00000138101	63	0	0	50	13	20.63	-	-	-	G	25611152	A	G	25611152	3	3	298	1	0	0	0	0	1	0	0	0	4824	275	10	5	245	5	DTNB	2	25611152	Missense_Mutation	SNP	A	TCGA-AN-A0FY-01A-11W-A050-09	10236431	25611152	217588221	5	33650										
STRN	0	genome.wustl.edu	37	chr2	37085129	37085129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gccaaaccccagactgcatcCgtgtggcctagcagagggcc	12	15	0	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	37085129	37085129	C	T	SNP	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	silent	c.1707	p.T569	0.070	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	130	0	0	125	36	22.36	-	-	-	T	37085129	C	T	37085129	2	4	298	1	0	0	0	0	0	0	0	1	15420	639	23	1		1	STRN	2	37085129	Silent	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	11473977	37085129	206114244	6	33651										
NRXN1	0	genome.wustl.edu	37	chr2	50464028	50464028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	acctatggccagtctgtctgCtcgtgtactgggtcggtcat	12	11	3	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	50464028	50464028	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.3421	p.A1141T	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	238	0	0	150	52	25.74	-	-	-	T	50464028	C	T	50464028	3	4	298	1	0	0	0	0	1	0	0	0	10738	797	28	4	1102	4	NRXN1	2	50464028	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	13378899	50464028	192735345	7	33652										
VWA3B	0	genome.wustl.edu	37	chr2	98928506	98928507	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gagcccagggtttgggtgatINSggggggggaacacaacatcg							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	98928506	98928507	-	G	INS	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1977_1978	p.T662fs	0.000:0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	30	0	0	37	6	13.95	-	-	-	G	98928507	-	G	98928506	7	5	298	1	0	1	1	0	0	0	0	0	17338	1479	51	0		0	VWA3B	2	98928506	Frame_Shift_Ins	INS	-	TCGA-AN-A0FY-01A-11W-A050-09	48464478	98928506	144270867	8	33653										
LCT	0	genome.wustl.edu	37	chr2	136567537	136567537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ggaacgagcaatgtaggaacGaacatccacagagtcttcct	10	10	1	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	136567537	136567537	G	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2380	p.R794C	0.985	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	81	0	0	42	19	31.15	-	-	-	A	136567537	G	A	136567537	3	1	298	1	0	0	0	0	1	0	0	0	8747	1058	37	1	3443	1	LCT	2	136567537	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	37639031	136567537	106631836	9	33654										
GAD1	0	genome.wustl.edu	37	chr2	171685996	171685996	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gtgccataggcttcttgcaaAggaccaacagcctggaagag	12	10	1	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	2	171685996	171685996	A	G	SNP	GAD1	ENST00000358196	human	ensembl	69_37n	1	known	missense	c.157	p.R53G	1.000	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD1	HGNC	ENSG00000128683	31	0	0	20	12	37.5	-	-	-	G	171685996	A	G	171685996	3	3	298	1	0	0	0	0	1	0	0	0	6228	63	3	5	167	5	GAD1	2	171685996	Missense_Mutation	SNP	A	TCGA-AN-A0FY-01A-11W-A050-09	35118459	171685996	71513377	10	33655										
ZNF501	0	genome.wustl.edu	37	chr3	44776097	44776097	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gtggaagttgtttccgtaaaCagtcaaatcttactcaacat	7	8	3	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	3	44776097	44776097	C	A	SNP	ZNF501	ENST00000396048	human	ensembl	69_37n	1	known	missense	c.184	p.Q62K	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF501	HGNC	ENSG00000186446	346	0	0	213	81	27.55	-	-	-	A	44776097	C	A	44776097	3	1	298	1	0	0	0	0	1	0	0	0	18045	479	17	4	186	4	ZNF501	3	44776097	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		44776097	153246333	11	33656										
SFMBT1	0	genome.wustl.edu	37	chr3	52977509	52977509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gaaggagcaactgctcacagGtagtgataacggtggcaacc	13	9	1	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	3	52977509	52977509	G	A	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	missense	c.224	p.T75I	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	155	1	0.64	100	43	30.07	-	-	-	A	52977509	G	A	52977509	3	1	298	1	0	0	0	0	1	0	0	0	14245	1261	44	4	2448	4	SFMBT1	3	52977509	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	8201412	52977509	145044921	12	33657										
GSK3B	0	genome.wustl.edu	37	chr3	119585461	119585461	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	actcctgaggtgaaatgtccTgttcctgacgaatcctaaag	9	10	0	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	3	119585461	119585461	T	G	SNP	GSK3B	ENST00000316626	human	ensembl	69_37n	-1	known	silent	c.924	p.T308	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701	207	0	0	199	66	24.81	-	-	-	G	119585461	T	G	119585461	2	3	298	1	0	0	0	0	0	0	0	1	6875	1567	55	5		5	GSK3B	3	119585461	Silent	SNP	T	TCGA-AN-A0FY-01A-11W-A050-09	66607952	119585461	78436969	13	33658										
PLXND1	0	genome.wustl.edu	37	chr3	129303234	129303235	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	acagcgtgcttaccctggttINSgggggggaagggcggaaact							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	3	129303234	129303235	-	G	INS	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2023_2022	p.N674fs	0.000:0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	44	0	0	24	4	14.29	-	-	-	G	129303235	-	G	129303234	7	5	298	1	0	1	1	0	0	0	0	0	12201	1812	63	0	3878	0	PLXND1	3	129303234	Frame_Shift_Ins	INS	-	TCGA-AN-A0FY-01A-11W-A050-09	9717773	129303234	68719196	14	33659										
MUC7	0	genome.wustl.edu	37	chr4	71346600	71346600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	aatctcactttgaattaccaCattatcctggactgctagct	5	11	1	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	4	71346600	71346600	C	T	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	missense	c.139	p.H47Y	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	376	0	0	513	92	15.21	-	-	-	T	71346600	C	T	71346600	3	4	298	1	0	0	0	0	1	0	0	0	10053	478	17	4	145	4	MUC7	4	71346600	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		71346600	119807676	15	33660										
ADAMTS3	0	genome.wustl.edu	37	chr4	73149357	73149357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	aacttgttataacctggtatGgagcagtatcgtgccaacac	9	9	0	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	4	73149357	73149357	G	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	silent	c.3114	p.S1038	1.000	pfscan_PLAC	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	139	0	0	86	73	45.91	-	-	-	A	73149357	G	A	73149357	2	1	298	1	0	0	0	0	0	0	0	1	267	1335	47	4		4	ADAMTS3	4	73149357	Silent	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	1802757	73149357	118004919	16	33661										
C5orf25	0	genome.wustl.edu	37	chr5	175717341	175717341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctcaagaagtgccatgccctCggcagaatatcccaggccca	9	15	1	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	5	175717341	175717341	C	T	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.757	p.R253W	0.004	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	404	0	0	130	116	46.59	-	-	-	T	175717341	C	T	175717341	3	4	298	1	0	0	0	0	1	0	0	0	2309	899	31	1		1	C5orf25	5	175717341	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		175717341	5197919	17	33662										
RIPK1	0	genome.wustl.edu	37	chr6	3077011	3077012	+	RNA	INS	-	-	G													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ttacagggtacagctctgccINSggggggggaaaaagtggtac							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	6	3077011	3077012	-	G	INS	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	50	0	0	90	11	10.89	-	-	-	G	3077012	-	G	3077011	6	5	298	0	1	1	1	0	0	0	0	0	13466	667	23	0		0	RIPK1	6	3077011	RNA	INS	-	TCGA-AN-A0FY-01A-11W-A050-09		3077011	168038056	18	33663										
RREB1	0	genome.wustl.edu	37	chr6	7211929	7211929	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	cccacatggagacccattcaGataacccactaaggtaggag	9	12	1	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	6	7211929	7211929	G	A	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	missense	c.694	p.D232N	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	201	0	0	125	29	18.83	-	-	-	A	7211929	G	A	7211929	3	1	298	1	0	0	0	0	1	0	0	0	13765	942	33	2	712	2	RREB1	6	7211929	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	4134918	7211929	163903138	19	33664										
COL9A1	0	genome.wustl.edu	37	chr6	70942387	70942387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	cattctctccaggagggccgGggggaccaggagggccaggc	18	12	1	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	6	70942387	70942387	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.2402	p.P801L	0.997	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	124	0	0	58	18	23.68	-	-	-	A	70942387	G	A	70942387	3	1	298	1	0	0	0	0	1	0	0	0	3737	1232	43	4	375	4	COL9A1	6	70942387	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	63730458	70942387	100172680	20	33665										
ELMO1	0	genome.wustl.edu	37	chr7	37253022	37253022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gtagaacatacagctggtgcGccatctcattgttgatggcc	11	10	1	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	7	37253022	37253022	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.872	p.A291V	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	209	0	0	243	57	18.94	-	-	-	A	37253022	G	A	37253022	3	1	298	1	0	0	0	0	1	0	0	0	5102	1087	38	1	1355	1	ELMO1	7	37253022	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		37253022	121885641	21	33666										
TATDN1	0	genome.wustl.edu	37	chr8	125506171	125506171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tatatattttgatccagcatGtgtacttttgactccacacc	5	10	0	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	8	125506171	125506171	G	A	SNP	TATDN1	ENST00000276692	human	ensembl	69_37n	-1	known	missense	c.694	p.H232Y	1.000	pfam_TatD_superfamily,pirsf_DNase_TatD	pfam_TatD_superfamily,pirsf_DNase_TatD	-	no_errors	TATDN1	HGNC	ENSG00000147687	485	0	0	404	55	11.96	-	-	-	A	125506171	G	A	125506171	3	1	298	1	0	0	0	0	1	0	0	0	15683	1377	48	4	207	4	TATDN1	8	125506171	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		125506171	20857851	22	33667										
OR13C8	0	genome.wustl.edu	37	chr9	107331659	107331659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gtaatctttccttcctcgacGtttgctacacaagttcctct	5	13	2	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	9	107331659	107331659	G	A	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.211	p.V71I	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	930	1	0.11	174	216	55.38	-	-	-	A	107331659	G	A	107331659	3	1	298	1	0	0	0	0	1	0	0	0	11011	1145	40	1	213	1	OR13C8	9	107331659	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		107331659	33881772	23	33668										
QSOX2	0	genome.wustl.edu	37	chr9	139110971	139110971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ttcctcacatccggcaatgaCttcaaataagacgaaaagaa	6	10	2	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	9	139110971	139110971	C	T	SNP	QSOX2	ENST00000455222	human	ensembl	69_37n	-1	novel	missense	c.163	p.V55I	1.000	NULL	pfam_Evr1_Alr,superfamily_Evr1_Alr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QSOX2	HGNC	ENSG00000165661	215	0	0	31	16	34.04	-	-	-	T	139110971	C	T	139110971	3	4	298	1	0	0	0	0	1	0	0	0	12967	564	20	4	1259	4	QSOX2	9	139110971	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	31779312	139110971	2102460	24	33669										
ZNF33A	0	genome.wustl.edu	37	chr10	38343498	38343498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tgattcatgtggaatgagttTcaacactgtttcagaattgg	10	5	3	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	10	38343498	38343498	T	C	SNP	ZNF33A	ENST00000432900	human	ensembl	69_37n	1	known	missense	c.464	p.F155S	0.027	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180	145	0	0	86	44	33.85	-	-	-	C	38343498	T	C	38343498	3	2	298	1	0	0	0	0	1	0	0	0	17950	1783	62	5	460	5	ZNF33A	10	38343498	Missense_Mutation	SNP	T	TCGA-AN-A0FY-01A-11W-A050-09		38343498	97191249	25	33670										
CNGA4	0	genome.wustl.edu	37	chr11	6261469	6261469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	accgctttctccgcgcgcccCgcctcttcgaggccttcgac	9	20	2	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	11	6261469	6261469	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	missense	c.445	p.R149C	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	18	0	0	69	36	34.29	-	-	-	T	6261469	C	T	6261469	3	4	298	1	0	0	0	0	1	0	0	0	3629	652	23	1	459	1	CNGA4	11	6261469	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		6261469	128745047	26	33671										
PTPRCAP	0	genome.wustl.edu	37	chr11	67203502	67203502	+	Frame_Shift_Del	DEL	T	T	-													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	agtctgtgtcctgctcatccTcctgtcgctcaaggtcattg							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	11	67203502	67203502	T	-	DEL	PTPRCAP	ENST00000326294	human	ensembl	69_37n	-1	known	frame_shift_del	c.323	p.E108fs	0.876	pirsf_Tyr_Pase_rcpt_C-assoc_CD45-AP	pirsf_Tyr_Pase_rcpt_C-assoc_CD45-AP	-	no_errors	PTPRCAP	HGNC	ENSG00000213402	68	0	0	15	2	11.76	-	-	-	-	67203502	T	-	67203502	7	5	298	1	0	1	0	1	0	0	0	0	12881	1551	54	0	301	0	PTPRCAP	11	67203502	Frame_Shift_Del	DEL	T	TCGA-AN-A0FY-01A-11W-A050-09	60942033	67203502	67803014	27	33672										
C1QTNF5	0	genome.wustl.edu	37	chr11	119216272	119216273	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tgccacacgcagtgggtgttINSgggggggtaagggtctgggt							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	11	119216272	119216273	-	G	INS	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	frame_shift_ins	c.499_498	p.N166fs	0.997:1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	108	0	0	31	6	16.22	-	-	-	G	119216273	-	G	119216272	7	5	298	1	0	1	1	0	0	0	0	0	1985	1812	63	0		0	C1QTNF5	11	119216272	Frame_Shift_Ins	INS	-	TCGA-AN-A0FY-01A-11W-A050-09	52012770	119216272	15790244	28	33673										
NFRKB	0	genome.wustl.edu	37	chr11	129754709	129754709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	caccgcaggactaggagaacGtgctggagagctcggaagcc	15	11	0	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	11	129754709	129754709	G	A	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	missense	c.748	p.R250C	0.920	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	165	0	0	133	26	16.35	-	-	-	A	129754709	G	A	129754709	3	1	298	1	0	0	0	0	1	0	0	0	10456	1145	40	1	3310	1	NFRKB	11	129754709	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	10538437	129754709	5251807	29	33674										
GPR162	0	genome.wustl.edu	37	chr12	6933549	6933549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctggcacaacaacggcgagcGctactatgcccgcggctgcc	12	16	0	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	12	6933549	6933549	G	A	SNP	GPR162	ENST00000311268	human	ensembl	69_37n	1	known	missense	c.485	p.R162H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_162,prints_GPCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510	36	0	0	25	8	23.53	-	-	-	A	6933549	G	A	6933549	3	1	298	1	0	0	0	0	1	0	0	0	6716	1087	38	1	506	1	GPR162	12	6933549	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		6933549	126918346	30	33675										
SUOX	0	genome.wustl.edu	37	chr12	56397811	56397813	+	In_Frame_Del	DEL	TCT	TCT	-													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctacatcacacccaaccctaTcttcttcacccggaaccatc							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	12	56397811	56397813	TCT	-	DEL	SUOX	ENST00000266971	human	ensembl	69_37n	1	known	in_frame_del	c.638_640	p.F215in_frame_del	1.000:0.991:1.000	superfamily_OxRdtase_Mopterin-bd_dom,prints_Mopterin_OxRdtase_euk	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5	-	no_errors	SUOX	HGNC	ENSG00000139531	410	0	0	118	21	15	-	-	-	-	56397813	TCT	-	56397811	7	5	298	1	0	1	0	1	0	0	0	0	15486	1435	50	0	648	0	SUOX	12	56397811	In_Frame_Del	DEL	TCT	TCGA-AN-A0FY-01A-11W-A050-09	49464262	56397811	77454084	31	33676										
NOS1	0	genome.wustl.edu	37	chr12	117723955	117723955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ccacacagcgcgaggcattcCgccaggcgtgcttggcccca	12	17	0	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	12	117723955	117723955	C	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.1244	p.R415Q	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	544	0	0	141	54	27.69	-	-	-	T	117723955	C	T	117723955	3	4	298	1	0	0	0	0	1	0	0	0	10613	652	23	1	3156	1	NOS1	12	117723955	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	61326144	117723955	16127940	32	33677										
C1QTNF9B	0	genome.wustl.edu	37	chr13	24465804	24465804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	aaggaaacttgctcagcaccGtgagccccacagtgaaagca	10	12	1	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	13	24465804	24465804	G	A	SNP	C1QTNF9B	ENST00000382137	human	ensembl	69_37n	-1	known	missense	c.626	p.T209M	0.982	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863	191	0	0	324	50	13.37	-	-	-	A	24465804	G	A	24465804	3	1	298	1	0	0	0	0	1	0	0	0	1990	1145	40	1	378	1	C1QTNF9B	13	24465804	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		24465804	90704074	33	33678										
RB1	0	genome.wustl.edu	37	chr13	48955538	48955538	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	aaatgataaaacatttagaaCgatgtgaacatcgaatcatg	7	5	1	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	13	48955538	48955538	C	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.1654	p.R552*	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	177	0	0	41	90	68.7	-	-	-	T	48955538	C	T	48955538	4	4	298	1	0	0	0	0	0	1	0	0	13181	528	19	1	1720	1	RB1	13	48955538	Nonsense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	24489734	48955538	66214340	34	33679										
GPC6	0	genome.wustl.edu	37	chr13	94482640	94482640	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctcagtatcacttcagtgaaGactacctggaatgtgtgagc	10	9	3	3			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	13	94482640	94482640	G	A	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.553	p.D185N	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	181	0	0	135	61	31.12	-	-	-	A	94482640	G	A	94482640	3	1	298	1	0	0	0	0	1	0	0	0	6652	942	33	2	563	2	GPC6	13	94482640	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	45527102	94482640	20687238	35	33680										
PLD4	0	genome.wustl.edu	37	chr14	105396393	105396393	+	Frame_Shift_Del	DEL	G	G	-													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	attctgggttgtggatggacGgcacatatacatgggcagtg							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	14	105396393	105396393	G	-	DEL	PLD4	ENST00000392593	human	ensembl	69_37n	1	known	frame_shift_del	c.668	p.H224fs	0.765	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	159	0	0	16	2	11.11	-	-	-	-	105396393	G	-	105396393	7	5	298	1	0	1	0	1	0	0	0	0	12122	1116	39	0	686	0	PLD4	14	105396393	Frame_Shift_Del	DEL	G	TCGA-AN-A0FY-01A-11W-A050-09		105396393	1953147	36	33681										
SH2B1	0	genome.wustl.edu	37	chr16	28878058	28878058	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ccgttggtaggggactggtcAgtgatggaacgtcccctggg	17	9	1	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	16	28878058	28878058	A	G	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.643	p.S215G	0.006	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	90	0	0	61	12	16.44	-	-	-	G	28878058	A	G	28878058	3	3	298	1	0	0	0	0	1	0	0	0	14315	188	7	5	645	5	SH2B1	16	28878058	Missense_Mutation	SNP	A	TCGA-AN-A0FY-01A-11W-A050-09		28878058	61476695	37	33682										
TP53	0	genome.wustl.edu	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	17	7578413	7578413	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.517	p.V173M	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	111	0	0	26	138	84.15	-	-	-	T	7578413	C	T	7578413	3	4	298	1	0	0	0	0	1	0	0	0	16477	478	17	4	781	4	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		7578413	73616797	38	33683										
KIAA0100	0	genome.wustl.edu	37	chr17	26961724	26961724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gctccaagtaagcagtgcccGgcgcatgggtgtgttgccat	14	11	0	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	17	26961724	26961724	G	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	missense	c.2881	p.R961G	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	142	0	0	207	33	13.75	-	-	-	C	26961724	G	C	26961724	3	2	298	1	0	0	0	0	1	0	0	0	8206	1115	39	3	3922	3	KIAA0100	17	26961724	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	19383311	26961724	54233486	39	33684										
FAM59A	0	genome.wustl.edu	37	chr18	29848211	29848211	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	cccagacttggggtcttcctCagcaccatcaattttcagag	8	13	4	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	18	29848211	29848211	C	T	SNP	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	missense	c.2254	p.E752K	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	96	0	0	119	19	13.77	-	-	-	T	29848211	C	T	29848211	3	4	298	1	0	0	0	0	1	0	0	0	5637	835	29	2	380	2	FAM59A	18	29848211	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		29848211	48229037	40	33685										
GIPC3	0	genome.wustl.edu	37	chr19	3589526	3589527	+	Frame_Shift_Ins	INS	-	-	G													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	agaccctgcggcttcgttctINSgggggggctgccacagtgga							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	19	3589526	3589527	-	G	INS	GIPC3	ENST00000322315	human	ensembl	69_37n	1	known	frame_shift_ins	c.678_679	p.A228fs	0.411:0.803	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855	82	0	0	36	4	10	-	-	-	G	3589527	-	G	3589526	7	5	298	1	0	1	1	0	0	0	0	0	6446	1567	55	0	692	0	GIPC3	19	3589526	Frame_Shift_Ins	INS	-	TCGA-AN-A0FY-01A-11W-A050-09		3589526	55539457	41	33686										
RFX1	0	genome.wustl.edu	37	chr19	14073674	14073674	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	ctcctcctcttcttcctcctCgtctggaacacagggaccaa	6	17	3	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	19	14073674	14073674	C	A	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	nonsense	c.2773	p.E925*	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	12	0	0	3	5	62.5	-	-	-	A	14073674	C	A	14073674	4	1	298	1	0	0	0	0	0	1	0	0	13345	893	31	3	170	3	RFX1	19	14073674	Nonsense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	10484148	14073674	45055309	42	33687										
SIGLEC1	0	genome.wustl.edu	37	chr20	3683872	3683872	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	accacgctgacagggcccgaGcgctcgctgccatggacgtt	13	15	0	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	20	3683872	3683872	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.1200	p.R400	0.635	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	79	0	0	42	20	32.26	-	-	-	A	3683872	G	A	3683872	2	1	298	1	0	0	0	0	0	0	0	1	14394	958	34	4		4	SIGLEC1	20	3683872	Silent	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09		3683872	59341648	43	33688										
CRNKL1	0	genome.wustl.edu	37	chr20	20033036	20033036	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tccccggcacggacgctagaAatcggctctgagagctcacc	11	15	2	2			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	20	20033036	20033036	A	C	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.434	p.F145C	0.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	86	0	0	58	29	33.33	-	-	-	C	20033036	A	C	20033036	3	2	298	1	0	0	0	0	1	0	0	0	3921	14	1	5	2168	5	CRNKL1	20	20033036	Missense_Mutation	SNP	A	TCGA-AN-A0FY-01A-11W-A050-09	16349164	20033036	42992484	44	33689										
CEP250	0	genome.wustl.edu	37	chr20	34092646	34092646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tttagagcccaggctgcagcGggagctggagcggctacagg	17	10	0	1			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	20	34092646	34092646	G	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.6449	p.R2150Q	0.036	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	90	0	0	61	55	47.41	-	-	-	A	34092646	G	A	34092646	3	1	298	1	0	0	0	0	1	0	0	0	3281	1116	39	1	6555	1	CEP250	20	34092646	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	14059610	34092646	28932874	45	33690										
PLCG1	0	genome.wustl.edu	37	chr20	39802848	39802848	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	caggccagctgtttcatggcCgagcccgggaaggctccttt	13	13	1	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	20	39802848	39802848	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	nonsense	c.3730	p.R1244*	0.999	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	70	0	0	50	17	25.37	-	-	-	T	39802848	C	T	39802848	4	4	298	1	0	0	0	0	0	1	0	0	12109	644	23	1	3852	1	PLCG1	20	39802848	Nonsense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09	5710202	39802848	23222672	46	33691										
CDC42EP1	0	genome.wustl.edu	37	chr22	37962638	37962639	+	Frame_Shift_Ins	INS	-	-	C													0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	tggtgcggagggtgggggcgINScccccccggaggatggcatc							TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	22	37962638	37962639	-	C	INS	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	frame_shift_ins	c.282_283	p.R96fs	0.000:0.001	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	53	0	0	20	4	16.67	-	-	-	C	37962639	-	C	37962638	7	5	298	1	0	1	1	0	0	0	0	0	3104	1074	38	0	284	0	CDC42EP1	22	37962638	Frame_Shift_Ins	INS	-	TCGA-AN-A0FY-01A-11W-A050-09		37962638	13341928	47	33692										
HEPH	0	genome.wustl.edu	37	chrX	65475997	65475997	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	gctatctgccaaaagggcatCctggagccccatggaggacg	13	12	1	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	X	65475997	65475997	C	G	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.2883	p.I961M	0.065	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	499	0	0	318	121	27.56	-	-	-	G	65475997	C	G	65475997	3	3	298	1	0	0	0	0	1	0	0	0	7105	845	30	2	2949	2	HEPH	23	65475997	Missense_Mutation	SNP	C	TCGA-AN-A0FY-01A-11W-A050-09		65475997	89794563	48	33693										
ARMCX5	0	genome.wustl.edu	37	chrX	101858403	101858403	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0612244897959184	3	0.884573867541399	1.00862068965517	0	1.08333333333333	0.1	0.5224358974359	0	caccttgttaaacaagggaaGtgtcaaaaccaagttttatg	8	7	1	0			TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6a8bd08-0e60-442d-adce-de020177f82c	aa5cbdd2-e1f7-4d59-962a-3362278d401a	X	101858403	101858403	G	T	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	missense	c.1334	p.S445I	0.146	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	104	0	0	98	42	30	-	-	-	T	101858403	G	T	101858403	3	4	298	1	0	0	0	0	1	0	0	0	966	1029	36	4	1336	4	ARMCX5	23	101858403	Missense_Mutation	SNP	G	TCGA-AN-A0FY-01A-11W-A050-09	36382406	101858403	53412157	49	33694										
HSPG2	0	genome.wustl.edu	37	chr1	22174253	22174253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ctggggctgcctggcgaccaCgcagttcagatccaaggtct	13	13	2	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	22174253	22174253	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.7954	p.V2652M	0.717	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	46	0	0	53	6	10.17	-	-	-	T	22174253	C	T	22174253	3	4	299	1	0	0	0	0	1	0	0	0	7484	536	19	1	5369	1	HSPG2	1	22174253	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		22174253	227076368	1	33695										
PGM1	0	genome.wustl.edu	37	chr1	64097433	64097433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gccaaaccgactgaagatccGtattgatgctatgcatggag	11	9	0	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	64097433	64097433	G	A	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	1	known	missense	c.716	p.R239H	1.000	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	99	0	0	83	42	33.6	-	-	-	A	64097433	G	A	64097433	3	1	299	1	0	0	0	0	1	0	0	0	11871	1145	40	1	980	1	PGM1	1	64097433	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	41923180	64097433	185153188	2	33696										
PSMD4	0	genome.wustl.edu	37	chr1	151239784	151239784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	cctcccaggccaccaaggacGgcaagaaggacaagaaggag	13	12	0	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	1	151239784	151239784	G	A	SNP	PSMD4	ENST00000368884	human	ensembl	69_37n	1	known	missense	c.1099	p.G367S	0.821	NULL	pfam_Ubiquitin-int_motif,pfam_Ssl1-like,smart_VWF_A,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_VWF_A	-	no_errors	PSMD4	HGNC	ENSG00000159352	359	1	0.28	166	193	53.76	-	-	-	A	151239784	G	A	151239784	3	1	299	1	0	0	0	0	1	0	0	0	12780	1116	39	1	1137	1	PSMD4	1	151239784	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	87142351	151239784	98010837	3	33697										
TRIB2	0	genome.wustl.edu	37	chr2	12880596	12880596	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tactcgggcaaagcagccgaCgtgtggagcctgggggtgat	17	9	0	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	2	12880596	12880596	C	T	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	silent	c.708	p.D236	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	80	0	0	62	47	43.12	-	-	-	T	12880596	C	T	12880596	2	4	299	1	0	0	0	0	0	0	0	1	16579	535	19	1		1	TRIB2	2	12880596	Silent	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		12880596	230318777	4	33698										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71170640	71170640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tgacccttacagcaatggtgGctggccctgtcacagctaat	10	12	1	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	2	71170640	71170640	G	T	SNP	ATP6V1B1	ENST00000454446	human	ensembl	69_37n	1	novel	missense	c.22	p.A8S	1.000	NULL	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_ATPase_F1/A1-cplx_a/bsu_N	-	no_stop_codon:bad_bp_length_for_coding_region	ATP6V1B1	HGNC	ENSG00000116039	57	0	0	25	38	60.32	-	-	-	T	71170640	G	T	71170640	3	4	299	1	0	0	0	0	1	0	0	0	1182	1218	42	4		4	ATP6V1B1	2	71170640	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	58290044	71170640	172028733	5	33699										
TFRC	0	genome.wustl.edu	37	chr3	195787076	195787076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gcattgttttctcaataagcGtatacaacagtgggctggca	10	8	1	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	3	195787076	195787076	G	A	SNP	TFRC	ENST00000360110	human	ensembl	69_37n	-1	known	missense	c.1511	p.T504M	0.008	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274	273	0	0	207	68	24.73	-	-	-	A	195787076	G	A	195787076	3	1	299	1	0	0	0	0	1	0	0	0	15907	1145	40	1	795	1	TFRC	3	195787076	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09		195787076	2235354	6	33700										
N4BP2	0	genome.wustl.edu	37	chr4	40104400	40104400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	aggtggggatcagaaatctaCtcgggtctctgatgtgtttc	13	7	3	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	4	40104400	40104400	C	T	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.935	p.T312I	0.000	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	160	0	0	116	48	29.27	-	-	-	T	40104400	C	T	40104400	3	4	299	1	0	0	0	0	1	0	0	0	10182	565	20	4	941	4	N4BP2	4	40104400	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		40104400	151049876	7	33701										
GRSF1	0	genome.wustl.edu	37	chr4	71697363	71697363	+	Nonstop_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	cgcctccctctatagtccatCacaaaagtaatgtcaactat	4	13	3	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	4	71697363	71697363	C	A	SNP	GRSF1	ENST00000514161	human	ensembl	69_37n	-1	putative	nonstop	c.653	p.*218L	0.543	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GRSF1	HGNC	ENSG00000132463	164	0	0	189	22	10.43	-	-	-	A	71697363	C	A	71697363	4	1	299	1	0	0	0	0	0	0	0	0	6860	813	29	2	619	2	GRSF1	4	71697363	Nonstop_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	31592963	71697363	119456913	8	33702										
ISL1	0	genome.wustl.edu	37	chr5	50689391	50689391	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gtgaagtagcatcaatgtccTctcaacttccagatacacct	6	12	2	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	50689391	50689391	T	C	SNP	ISL1	ENST00000230658	human	ensembl	69_37n	1	known	missense	c.997	p.S333P	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC	ENSG00000016082	309	0	0	159	37	18.88	-	-	-	C	50689391	T	C	50689391	3	2	299	1	0	0	0	0	1	0	0	0	7910	1551	54	5	1019	5	ISL1	5	50689391	Missense_Mutation	SNP	T	TCGA-AN-A0FZ-01A-11W-A050-09		50689391	130225869	9	33703										
MAST4	0	genome.wustl.edu	37	chr5	66438047	66438047	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	cccaactggaatctgaggatGacacaagttattttgatagt	9	7	1	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	66438047	66438047	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.2608	p.D870N	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	196	0	0	82	16	16.33	-	-	-	A	66438047	G	A	66438047	3	1	299	1	0	0	0	0	1	0	0	0	9398	1290	45	2	2807	2	MAST4	5	66438047	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	15748656	66438047	114477213	10	33704										
MGAT4B	0	genome.wustl.edu	37	chr5	179225212	179225212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gtccgtctggatcgagaggcGcagtgcttccagagggccga	16	11	1	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	5	179225212	179225212	G	A	SNP	MGAT4B	ENST00000337755	human	ensembl	69_37n	-1	known	missense	c.1621	p.R541C	1.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013	13	0	0	14	10	41.67	-	-	-	A	179225212	G	A	179225212	3	1	299	1	0	0	0	0	1	0	0	0	9617	1087	38	1	78	1	MGAT4B	5	179225212	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	112787165	179225212	1690048	11	33705										
CUL7	0	genome.wustl.edu	37	chr6	43005481	43005481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	aggaggcatagggcacacccCgggagcgaatctgtagggta	16	9	1	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	43005481	43005481	C	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.5294	p.R1765Q	0.931	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	158	0	0	114	18	13.53	-	-	-	T	43005481	C	T	43005481	3	4	299	1	0	0	0	0	1	0	0	0	4091	652	23	1	58	1	CUL7	6	43005481	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		43005481	128109586	12	33706										
VNN2	0	genome.wustl.edu	37	chr6	133072390	133072390	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tgtagcttaaatgacagcaaAgctccttttgacagactgta	8	8	0	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	133072390	133072390	A	T	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.1094	p.L365H	0.954	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	378	0	0	257	120	31.83	-	-	-	T	133072390	A	T	133072390	3	4	299	1	0	0	0	0	1	0	0	0	17280	72	3	5	480	5	VNN2	6	133072390	Missense_Mutation	SNP	A	TCGA-AN-A0FZ-01A-11W-A050-09	90066909	133072390	38042677	13	33707										
OPRM1	0	genome.wustl.edu	37	chr6	154412313	154412313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gtgctggtggtggtggctgtGttcatcgtctgctggactcc	16	9	2	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	6	154412313	154412313	G	T	SNP	OPRM1	ENST00000524150	human	ensembl	69_37n	1	known	missense	c.517	p.V173F	1.000	NULL	prints_Mu_opioid_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	353	2	0.56	280	40	12.5	-	-	-	T	154412313	G	T	154412313	3	4	299	1	0	0	0	0	1	0	0	0	10960	1364	48	4	1214	4	OPRM1	6	154412313	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	21339923	154412313	16702754	14	33708										
ZNF680	0	genome.wustl.edu	37	chr7	63982642	63982642	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gtttgaatttgaaaatttatGaaagactttcacgtatttat	6	3	1	4			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	7	63982642	63982642	G	T	SNP	ZNF680	ENST00000309683	human	ensembl	69_37n	-1	known	missense	c.490	p.H164N	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041	208	0	0	104	20	16.13	-	-	-	T	63982642	G	T	63982642	3	4	299	1	0	0	0	0	1	0	0	0	18183	1290	45	2	1106	2	ZNF680	7	63982642	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09		63982642	95156021	15	33709										
COG5	0	genome.wustl.edu	37	chr7	106898812	106898812	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gcccaatcacctgacttgcaTctccttgtgtggagagctgt	10	12	2	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	7	106898812	106898812	T	C	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.1685	p.D562G	1.000	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	369	0	0	142	158	52.49	-	-	-	C	106898812	T	C	106898812	3	2	299	1	0	0	0	0	1	0	0	0	3691	1435	50	5	933	5	COG5	7	106898812	Missense_Mutation	SNP	T	TCGA-AN-A0FZ-01A-11W-A050-09	42916170	106898812	52239851	16	33710										
LZTS1	0	genome.wustl.edu	37	chr8	20112587	20112587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	cagcagcccgtcggaataccGgttgagcttcttgaggtggg	15	10	1	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	8	20112587	20112587	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	missense	c.106	p.R36W	0.385	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	111	0	0	15	31	67.39	-	-	-	A	20112587	G	A	20112587	3	1	299	1	0	0	0	0	1	0	0	0	9205	1115	39	1	1696	1	LZTS1	8	20112587	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09		20112587	126251435	17	33711										
PTPRD	0	genome.wustl.edu	37	chr9	8504363	8504363	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	taagctgtttggtttcagtcCttgcagcctatatgatgtcc	9	9	1	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	9	8504363	8504363	C	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	nonsense	c.1720	p.G574*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	560	0	0	545	94	14.69	-	-	-	A	8504363	C	A	8504363	4	1	299	1	0	0	0	0	0	1	0	0	12882	690	24	4	4182	4	PTPRD	9	8504363	Nonsense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		8504363	132709068	18	33712										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	158	0	0	254	84	24.85	-	-	-	G	8111514	-	G	8111513	7	5	299	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-AN-A0FZ-01A-11W-A050-09		8111513	127423234	19	33713										
SGPL1	0	genome.wustl.edu	37	chr10	72604349	72604349	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	attgcatggagtgtcgtgtgGaccctgctgatagtctgggg	16	7	1	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	72604349	72604349	G	A	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	1	known	nonsense	c.147	p.W49*	0.996	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	222	0	0	201	47	18.88	-	-	-	A	72604349	G	A	72604349	4	1	299	1	0	0	0	0	0	1	0	0	14306	1183	41	2	153	2	SGPL1	10	72604349	Nonsense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	64492836	72604349	62930398	20	33714										
DMBT1	0	genome.wustl.edu	37	chr10	124377690	124377690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	aggcagctgggctgtggctgGgccatgtcagccccaggaaa	16	11	1	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	124377690	124377690	G	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.5049	p.W1683C	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	304	0	0	170	29	14.57	-	-	-	T	124377690	G	T	124377690	3	4	299	1	0	0	0	0	1	0	0	0	4613	1241	43	4	4812	4	DMBT1	10	124377690	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	51773341	124377690	11157057	21	33715										
DOCK1	0	genome.wustl.edu	37	chr10	128908590	128908590	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ctctactgcttgatcgaaatCgtccacagtgacctcttcac	6	14	3	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	10	128908590	128908590	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	silent	c.2532	p.I844	0.991	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	178	0	0	76	11	12.64	-	-	-	T	128908590	C	T	128908590	2	4	299	1	0	0	0	0	0	0	0	1	4719	874	31	1		1	DOCK1	10	128908590	Silent	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	4530900	128908590	6626157	22	33716										
CYB5R2	0	genome.wustl.edu	37	chr11	7694105	7694105	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	accccagtgacggtgatggtCaggagcagggacgggtcctg	17	10	1	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	7694105	7694105	C	T	SNP	CYB5R2	ENST00000524608	human	ensembl	69_37n	-1	putative	silent	c.132	p.L44	0.011	NULL	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase	-	no_stop_codon:bad_bp_length_for_coding_region	CYB5R2	HGNC	ENSG00000166394	115	0	0	52	31	37.35	-	-	-	T	7694105	C	T	7694105	2	4	299	1	0	0	0	0	0	0	0	1	4158	841	29	2		2	CYB5R2	11	7694105	Silent	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		7694105	127312411	23	33717										
OR5D18	0	genome.wustl.edu	37	chr11	55587367	55587367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	agatgttggtgaaccttgttGtcaaagacagaaccatttca	9	7	2	4			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	55587367	55587367	G	T	SNP	OR5D18	ENST00000333976	human	ensembl	69_37n	1	known	missense	c.262	p.V88F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119	716	0	0	318	73	18.67	-	-	-	T	55587367	G	T	55587367	3	4	299	1	0	0	0	0	1	0	0	0	11230	1377	48	4	264	4	OR5D18	11	55587367	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	47893262	55587367	79419149	24	33718										
FAT3	0	genome.wustl.edu	37	chr11	92616055	92616055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tggtggtacccaatatccagGctggccactcctacgtgggg	13	12	0	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	11	92616055	92616055	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.12433	p.A4145T	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	108	0	0	72	10	12.2	-	-	-	A	92616055	G	A	92616055	3	1	299	1	0	0	0	0	1	0	0	0	5737	1203	42	4	12523	4	FAT3	11	92616055	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	37028688	92616055	42390461	25	33719										
SOX5	0	genome.wustl.edu	37	chr12	23687456	23687457	+	Frame_Shift_Ins	INS	-	-	A													0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tggggatctgtgcttgttgcINSctgtcaagaaaggaatttcc							TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	23687456	23687457	-	A	INS	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1989_1990	p.Q665fs	1.000:1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	139	0	0	117	58	33.14	-	-	-	A	23687457	-	A	23687456	7	5	299	1	0	1	1	0	0	0	0	0	15043	753	26	0	306	0	SOX5	12	23687456	Frame_Shift_Ins	INS	-	TCGA-AN-A0FZ-01A-11W-A050-09		23687456	110164439	26	33720										
NELL2	0	genome.wustl.edu	37	chr12	45105162	45105162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	acagcctgaactctcaacaaGtttcatggtctggtcctgtt	8	11	3	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	45105162	45105162	G	A	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	missense	c.1252	p.L418F	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	195	0	0	173	22	11.28	-	-	-	A	45105162	G	A	45105162	3	1	299	1	0	0	0	0	1	0	0	0	10406	1029	36	4	1388	4	NELL2	12	45105162	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	21417706	45105162	88746733	27	33721										
OR6C6	0	genome.wustl.edu	37	chr12	55688683	55688683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ataggacatggcagccaggaGgtaaaactcagtaactcccg	11	10	1	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	55688683	55688683	G	A	SNP	OR6C6	ENST00000358433	human	ensembl	69_37n	-1	known	missense	c.334	p.L112F	0.670	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C6	HGNC	ENSG00000188324	178	0	0	107	29	21.32	-	-	-	A	55688683	G	A	55688683	3	1	299	1	0	0	0	0	1	0	0	0	11267	1000	35	4	612	4	OR6C6	12	55688683	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	10583521	55688683	78163212	28	33722										
OS9	0	genome.wustl.edu	37	chr12	58114298	58114298	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	aaggagatcttcttcaatatCttggtaagaggcttctaccc	8	9	5	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	58114298	58114298	C	T	SNP	OS9	ENST00000315970	human	ensembl	69_37n	1	known	silent	c.1875	p.I625	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	190	0	0	282	37	11.6	-	-	-	T	58114298	C	T	58114298	2	4	299	1	0	0	0	0	0	0	0	1	11345	903	32	2		2	OS9	12	58114298	Silent	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	2425615	58114298	75737597	29	33723										
DNAH10	0	genome.wustl.edu	37	chr12	124341720	124341720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ctgggctggactgccctcgcGtccgctaccctgacttcaac	10	17	1	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	12	124341720	124341720	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.6202	p.V2068I	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	98	0	0	61	29	32.22	-	-	-	A	124341720	G	A	124341720	3	1	299	1	0	0	0	0	1	0	0	0	4634	1145	40	1	6344	1	DNAH10	12	124341720	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	66227422	124341720	9510175	30	33724										
ATG2B	0	genome.wustl.edu	37	chr14	96773188	96773188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ctgggatacattcccactctCgtcaggaaacaggaagaggt	11	10	2	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	14	96773188	96773188	C	T	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.4369	p.E1457K	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	139	0	0	137	26	15.95	-	-	-	T	96773188	C	T	96773188	3	4	299	1	0	0	0	0	1	0	0	0	1098	893	31	1	1919	1	ATG2B	14	96773188	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		96773188	10576352	31	33725										
AP4E1	0	genome.wustl.edu	37	chr15	51223146	51223146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	agctcttgagaatactgggaCttctaggaaaagatgatcaa	10	6	3	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	15	51223146	51223146	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	missense	c.847	p.L283F	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	169	0	0	84	30	26.32	-	-	-	T	51223146	C	T	51223146	3	4	299	1	0	0	0	0	1	0	0	0	753	565	20	4	873	4	AP4E1	15	51223146	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		51223146	51308246	32	33726										
SLCO3A1	0	genome.wustl.edu	37	chr15	92671615	92671615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	cagccctggacccctactcgCcctgcaataataactgtgaa	7	15	0	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	15	92671615	92671615	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	69_37n	1	known	missense	c.1408	p.P470S	0.001	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463	314	0	0	285	38	11.76	-	-	-	T	92671615	C	T	92671615	3	4	299	1	0	0	0	0	1	0	0	0	14817	739	26	4	1434	4	SLCO3A1	15	92671615	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	41448469	92671615	9859777	33	33727										
SEPHS2	0	genome.wustl.edu	37	chr16	30455839	30455839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tcccttttccacaatgccaaCgatccacgcttggtgaccct	6	16	0	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	16	30455839	30455839	C	T	SNP	SEPHS2	ENST00000542752	human	ensembl	69_37n	-1	known	missense	c.1039	p.V347I	1.000	pfam_AIR_synth_C,superfamily_AIR_synth_C,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918	130	0	0	94	88	48.35	-	-	-	T	30455839	C	T	30455839	3	4	299	1	0	0	0	0	1	0	0	0	14143	536	19	1	140	1	SEPHS2	16	30455839	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		30455839	59898914	34	33728										
GPR114	0	genome.wustl.edu	37	chr16	57597859	57597859	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ccagggagctgcggctcatcTgtatctacttctccaacacc	8	15	4	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	16	57597859	57597859	T	A	SNP	GPR114	ENST00000340339	human	ensembl	69_37n	1	known	missense	c.397	p.C133S	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	68	0	0	27	30	52.63	-	-	-	A	57597859	T	A	57597859	3	1	299	1	0	0	0	0	1	0	0	0	6681	1580	55	5	411	5	GPR114	16	57597859	Missense_Mutation	SNP	T	TCGA-AN-A0FZ-01A-11W-A050-09	27142020	57597859	32756894	35	33729										
MYBBP1A	0	genome.wustl.edu	37	chr17	4448343	4448343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	gcgccttcccagcctgcagcAcggtcatcagctgttcccgg	11	17	2	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	17	4448343	4448343	A	G	SNP	MYBBP1A	ENST00000381556	human	ensembl	69_37n	-1	known	missense	c.2288	p.V763A	1.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382	49	0	0	26	13	33.33	-	-	-	G	4448343	A	G	4448343	3	3	299	1	0	0	0	0	1	0	0	0	10080	159	6	5	1778	5	MYBBP1A	17	4448343	Missense_Mutation	SNP	A	TCGA-AN-A0FZ-01A-11W-A050-09		4448343	76746867	36	33730										
EVPL	0	genome.wustl.edu	37	chr17	74004932	74004932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ctcctgcaccgtgggaggccGcttctcgagctcctggatcc	12	16	1	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	17	74004932	74004932	G	A	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.4354	p.R1452W	0.963	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	91	0	0	56	72	55.38	-	-	-	A	74004932	G	A	74004932	3	1	299	1	0	0	0	0	1	0	0	0	5329	1086	38	1	1751	1	EVPL	17	74004932	Missense_Mutation	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	69556589	74004932	7190278	37	33731										
ANKRD24	0	genome.wustl.edu	37	chr19	4212477	4212477	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tgtttctcccgtcagtccccGgaggccagctccctgcacat	9	17	2	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	4212477	4212477	G	A	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	1	known	silent	c.1335	p.P445	0.017	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	368	0	0	290	52	15.2	-	-	-	A	4212477	G	A	4212477	2	1	299	1	0	0	0	0	0	0	0	1	653	1103	39	1		1	ANKRD24	19	4212477	Silent	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09		4212477	54916506	38	33732										
EPS15L1	0	genome.wustl.edu	37	chr19	16514562	16514562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	acctggttgatttcgtcttgCgttgacttcagggacttgat	11	8	2	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	16514562	16514562	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.1608	p.T536	0.049	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	121	0	0	98	14	12.5	-	-	-	T	16514562	C	T	16514562	2	4	299	1	0	0	0	0	0	0	0	1	5230	755	27	1		1	EPS15L1	19	16514562	Silent	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	12302085	16514562	42614421	39	33733										
COMP	0	genome.wustl.edu	37	chr19	18898318	18898318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	acggtcgccgtcgatgtcgtCgtcgcacgcatcgccccggc	13	17	0	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	18898318	18898318	C	T	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.1117	p.D373N	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	36	0	0	25	12	32.43	-	-	-	T	18898318	C	T	18898318	3	4	299	1	0	0	0	0	1	0	0	0	3754	884	31	1	1196	1	COMP	19	18898318	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	2383756	18898318	40230665	40	33734										
MYBPC2	0	genome.wustl.edu	37	chr19	50957393	50957393	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tacaccatcaaggtcaccaaCcccgtcggcgaggacgtggc	11	15	2	0			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	19	50957393	50957393	C	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.1866	p.N622K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	121	1	0.82	123	30	19.61	-	-	-	A	50957393	C	A	50957393	3	1	299	1	0	0	0	0	1	0	0	0	10084	506	18	4	1932	4	MYBPC2	19	50957393	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09	32059075	50957393	8171590	41	33735										
TMC2	0	genome.wustl.edu	37	chr20	2596835	2596835	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	tgtgctgggtttgatcttcaAccaaggaatgatctggtgag	13	6	3	3			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	20	2596835	2596835	A	G	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.1925	p.N642S	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	225	0	0	197	116	37.06	-	-	-	G	2596835	A	G	2596835	3	3	299	1	0	0	0	0	1	0	0	0	16080	43	2	5	1983	5	TMC2	20	2596835	Missense_Mutation	SNP	A	TCGA-AN-A0FZ-01A-11W-A050-09		2596835	60428685	42	33736										
SLC32A1	0	genome.wustl.edu	37	chr20	37356319	37356319	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ccaacgctgggcggccgagtGgtgaacgtagcgcagatcat	15	11	1	2			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	20	37356319	37356319	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	69_37n	1	known	silent	c.615	p.V205	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438	64	0	0	75	13	14.77	-	-	-	A	37356319	G	A	37356319	2	1	299	1	0	0	0	0	0	0	0	1	14654	1335	47	4		4	SLC32A1	20	37356319	Silent	SNP	G	TCGA-AN-A0FZ-01A-11W-A050-09	34759484	37356319	25669201	43	33737										
KRTAP19-6	0	genome.wustl.edu	37	chr21	31914098	31914098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	acagccatagcccagaccacCaaagcctccacagccatatc	5	18	0	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	21	31914098	31914098	C	T	SNP	KRTAP19-6	ENST00000334046	human	ensembl	69_37n	-1	known	missense	c.55	p.G19S	0.000	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-6	HGNC	ENSG00000186925	447	0	0	255	72	21.88	-	-	-	T	31914098	C	T	31914098	3	4	299	1	0	0	0	0	1	0	0	0	8586	594	21	4	125	4	KRTAP19-6	21	31914098	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		31914098	16215797	44	33738										
CFP	0	genome.wustl.edu	37	chrX	47485822	47485822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.957674047556388	0.824137931034483	NA	0.824137931034483	0.166666666666667	0.696581196581198	0	ggcccctgcaggtcctcccgCgtgactgctggcccgggatt	14	16	0	1			TCGA-AN-A0FZ-01A-11W-A050-09	TCGA-AN-A0FZ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d77f59f7-8cff-41f3-a1bb-0de14524d4f4	5605aad9-7f20-4db3-9ed8-cae136f5773b	X	47485822	47485822	C	T	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	missense	c.1037	p.R346H	0.467	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	179	0	0	121	19	13.57	-	-	-	T	47485822	C	T	47485822	3	4	299	1	0	0	0	0	1	0	0	0	3322	768	27	1	384	1	CFP	23	47485822	Missense_Mutation	SNP	C	TCGA-AN-A0FZ-01A-11W-A050-09		47485822	107784738	45	33739										
PGD	0	genome.wustl.edu	37	chr1	10477067	10477067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	aagctgtctttgctcggtgcTtatcatctctgaaggatgag	11	8	3	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	10477067	10477067	T	G	SNP	PGD	ENST00000270776	human	ensembl	69_37n	1	known	missense	c.868	p.L290V	1.000	pfam_6PGDH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657	104	0	0	102	34	25	-	-	-	G	10477067	T	G	10477067	3	3	300	1	0	0	0	0	1	0	0	0	11861	1606	56	5	902	5	PGD	1	10477067	Missense_Mutation	SNP	T	TCGA-AN-A0G0-01A-11W-A050-09		10477067	238773554	1	33740										
ABCA4	0	genome.wustl.edu	37	chr1	94466444	94466444	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tcgaaaggcgccctttaccaTgatggccagccgggtacaca	11	13	0	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	94466444	94466444	T	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.6427	p.M2143L	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	85	0	0	65	67	50.76	-	-	-	A	94466444	T	A	94466444	3	1	300	1	0	0	0	0	1	0	0	0	34	1464	51	5	410	5	ABCA4	1	94466444	Missense_Mutation	SNP	T	TCGA-AN-A0G0-01A-11W-A050-09	83989377	94466444	154784177	2	33741										
TOR1AIP1	0	genome.wustl.edu	37	chr1	179870511	179870511	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	aggccagatccagggattctGatgaatctggaggtaatatt	12	6	2	3			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	179870511	179870511	G	T	SNP	TOR1AIP1	ENST00000435319	human	ensembl	69_37n	1	known	missense	c.727	p.D243Y	0.068	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	49	0	0	63	15	19.23	-	-	-	T	179870511	G	T	179870511	3	4	300	1	0	0	0	0	1	0	0	0	16468	1290	45	2	745	2	TOR1AIP1	1	179870511	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	85404067	179870511	69380110	3	33742										
NID1	0	genome.wustl.edu	37	chr1	236205579	236205579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	cacccagacaccctgctgccCagagttactactcctaggag	8	16	0	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	236205579	236205579	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.766	p.G256R	0.989	pfam_Nidogen_extracell_dom,smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	13	0	0	75	22	22.68	-	-	-	T	236205579	C	T	236205579	3	4	300	1	0	0	0	0	1	0	0	0	10486	594	21	4	3045	4	NID1	1	236205579	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09	56335068	236205579	13045042	4	33743										
NTSR2	0	genome.wustl.edu	37	chr2	11802135	11802135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gaggctgcggatccggcgcaCgtctttatgtctcaccaggc	13	13	2	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	11802135	11802135	C	T	SNP	NTSR2	ENST00000306928	human	ensembl	69_37n	-1	known	missense	c.856	p.V286M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_NT2_rcpt,prints_NT_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NTSR2	HGNC	ENSG00000169006	15	0	0	16	6	27.27	-	-	-	T	11802135	C	T	11802135	3	4	300	1	0	0	0	0	1	0	0	0	10784	536	19	1	388	1	NTSR2	2	11802135	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09		11802135	231397238	5	33744										
GPR39	0	genome.wustl.edu	37	chr2	133175158	133175158	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	ggtactgagtaccccctggtGaacgtgcccagccaccgggg	14	14	0	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	133175158	133175158	G	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	silent	c.543	p.V181	0.184	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	53	0	0	26	24	48	-	-	-	T	133175158	G	T	133175158	2	4	300	1	0	0	0	0	0	0	0	1	6743	1277	45	2		2	GPR39	2	133175158	Silent	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	121373023	133175158	110024215	6	33745										
TGFBR2	0	genome.wustl.edu	37	chr3	30732950	30732950	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gagacgttgactgagtgctgGgaccacgacccagaggcccg	15	12	0	4			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	3	30732950	30732950	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	1	known	nonsense	c.1638	p.W546*	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	99	0	0	55	88	61.54	-	-	-	A	30732950	G	A	30732950	4	1	300	1	0	0	0	0	0	1	0	0	15917	1241	43	4	1668	4	TGFBR2	3	30732950	Nonsense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		30732950	167289480	7	33746										
CAMK2D	0	genome.wustl.edu	37	chr4	114434519	114434519	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tagccagcatagttgtcaagAtggcaccctgtgaaaaaaat	9	8	1	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	4	114434519	114434519	A	G	SNP	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	missense	c.911	p.I304T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	77	0	0	86	29	25.22	-	-	-	G	114434519	A	G	114434519	3	3	300	1	0	0	0	0	1	0	0	0	2626	333	12	5	711	5	CAMK2D	4	114434519	Missense_Mutation	SNP	A	TCGA-AN-A0G0-01A-11W-A050-09		114434519	76719757	8	33747										
NKX2-5	0	genome.wustl.edu	37	chr5	172659707	172659708	+	Frame_Shift_Ins	INS	-	-	G													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	cggcagtggccggctgcgctINSggggaaggcccggcggggta							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	5	172659707	172659708	-	G	INS	NKX2-5	ENST00000329198	human	ensembl	69_37n	-1	known	frame_shift_ins	c.840_839	p.A281fs	0.138:0.398	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	NKX2-5	HGNC	ENSG00000183072	9	0	0	6	4	40	-	-	-	G	172659708	-	G	172659707	7	5	300	1	0	1	1	0	0	0	0	0	10525	1567	55	0	138	0	NKX2-5	5	172659707	Frame_Shift_Ins	INS	-	TCGA-AN-A0G0-01A-11W-A050-09		172659707	8255553	9	33748										
PHACTR1	0	genome.wustl.edu	37	chr6	13287303	13287303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	ttgtttccttaggtttcaccGaccttaacagtcgaattcct	6	11	1	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	13287303	13287303	G	T	SNP	PHACTR1	ENST00000379335	human	ensembl	69_37n	1	known	missense	c.428	p.R143L	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	187	0	0	168	53	23.98	-	-	-	T	13287303	G	T	13287303	3	4	300	1	0	0	0	0	1	0	0	0	11883	1058	37	3	1786	3	PHACTR1	6	13287303	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		13287303	157827764	10	33749										
NUP153	0	genome.wustl.edu	37	chr6	17629273	17629273	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tgaagcactcttggtttctaTggttccaaggttgaagctgc	11	8	2	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	17629273	17629273	T	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.3250	p.I1084L	0.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	107	0	0	98	17	14.78	-	-	-	A	17629273	T	A	17629273	3	1	300	1	0	0	0	0	1	0	0	0	10828	1464	51	5	1290	5	NUP153	6	17629273	Missense_Mutation	SNP	T	TCGA-AN-A0G0-01A-11W-A050-09	4341970	17629273	153485794	11	33750										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549525	32549525	+	Missense_Mutation	SNP	C	C	G													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	accacctgacttcaatgctgCctggatagaaaccactcaca							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	32549525	32549525	C	G	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.461	p.G154A	0.607	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	21	0	0	152	26	14.61	-	-	-	G	32549525	C	G	32549525	3	3	300	1	0	0	0	0	1	0	0	0	7259	739	26	4	355	4	HLA-DRB1	6	32549525	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09	14920252	32549525	138565542	12	33751	274	2								
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549531	32549531	+	Missense_Mutation	SNP	T	T	C													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tgacttcaatgctgcctggaTagaaaccactcacagagcag							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	32549531	32549531	T	C	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.455	p.Y152C	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	24	0	0	162	27	14.29	-	-	-	C	32549531	T	C	32549531	3	2	300	1	0	0	0	0	1	0	0	0	7259	1406	49	5	361	5	HLA-DRB1	6	32549531	Missense_Mutation	SNP	T	TCGA-AN-A0G0-01A-11W-A050-09	6	32549531	138565536	13	33752	274	2								
AARS2	0	genome.wustl.edu	37	chr6	44278884	44278884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gtggtccaaaggaaagcacaCggctagcaggcaccctgggg	15	11	0	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	44278884	44278884	C	T	SNP	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	missense	c.596	p.R199H	0.908	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	24	0	0	21	28	57.14	-	-	-	T	44278884	C	T	44278884	3	4	300	1	0	0	0	0	1	0	0	0	20	536	19	1	2437	1	AARS2	6	44278884	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09	11729353	44278884	126836183	14	33753										
LAMA2	0	genome.wustl.edu	37	chr6	129785500	129785500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	aggttatgcattggtcagccGtcccattcgctggtacccca	10	13	1	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	129785500	129785500	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.7058	p.R2353H	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	98	0	0	186	57	23.46	-	-	-	A	129785500	G	A	129785500	3	1	300	1	0	0	0	0	1	0	0	0	8660	1145	40	1	7256	1	LAMA2	6	129785500	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	85506616	129785500	41329567	15	33754										
AOAH	0	genome.wustl.edu	37	chr7	36698846	36698846	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tccagagtgtgacataccacAtcagcattcatatctgcgct	7	12	3	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	36698846	36698846	A	G	SNP	AOAH	ENST00000258749	human	ensembl	69_37n	-1	known	silent	c.315	p.D105	1.000	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	246	0	0	278	148	34.74	-	-	-	G	36698846	A	G	36698846	2	3	300	1	0	0	0	0	0	0	0	1	727	214	8	5		5	AOAH	7	36698846	Silent	SNP	A	TCGA-AN-A0G0-01A-11W-A050-09		36698846	122439817	16	33755										
GRM3	0	genome.wustl.edu	37	chr7	86415634	86415634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tcagctacgcatccaccagcGccaaactcagtgataagtcg	8	14	2	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	86415634	86415634	G	A	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.526	p.A176T	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	82	0	0	77	44	36.36	-	-	-	A	86415634	G	A	86415634	3	1	300	1	0	0	0	0	1	0	0	0	6849	1087	38	1	532	1	GRM3	7	86415634	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	49716788	86415634	72723029	17	33756										
ABCB4	0	genome.wustl.edu	37	chr7	87074281	87074282	+	Frame_Shift_Ins	INS	-	-	A													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gaaagctccaattaggattgINSaaaaaaaaacctgagcaaaa							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	87074281	87074282	-	A	INS	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1016_1015	p.S339fs	1.000:1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	47	0	0	40	15	27.27	-	-	-	A	87074282	-	A	87074281	7	5	300	1	0	1	1	0	0	0	0	0	43	1294	45	0	2920	0	ABCB4	7	87074281	Frame_Shift_Ins	INS	-	TCGA-AN-A0G0-01A-11W-A050-09	658647	87074281	72064382	18	33757										
COL14A1	0	genome.wustl.edu	37	chr8	121222032	121222032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tctgaccttctactgtacgaCgtgactgagaacagcatgcg	10	11	2	3			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	8	121222032	121222032	C	T	SNP	COL14A1	ENST00000523142	human	ensembl	69_37n	1	putative	missense	c.628	p.R210C	0.956	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon	COL14A1	HGNC	ENSG00000187955	49	0	0	62	57	47.9	-	-	-	T	121222032	C	T	121222032	3	4	300	1	0	0	0	0	1	0	0	0	3701	535	19	1	1401	1	COL14A1	8	121222032	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09		121222032	25141990	19	33758										
DNHD1	0	genome.wustl.edu	37	chr11	6579764	6579764	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	acctgttcttcctgattggaGataaacaggcccacaagcag	9	11	1	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	6579764	6579764	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.9052	p.D3018N	0.697	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	60	0	0	56	22	28.21	-	-	-	A	6579764	G	A	6579764	3	1	300	1	0	0	0	0	1	0	0	0	4703	942	33	2	9155	2	DNHD1	11	6579764	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		6579764	128426752	20	33759										
FGF23	0	genome.wustl.edu	37	chr12	4479739	4479739	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	ctcggcgctccgggtgtgccGccgtggtatgggggtgttga	19	10	0	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	4479739	4479739	G	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.526	p.R176	0.901	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	29	0	0	13	18	58.06	-	-	-	T	4479739	G	T	4479739	2	4	300	1	0	0	0	0	0	0	0	1	5898	1086	38	3		3	FGF23	12	4479739	Silent	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		4479739	129372156	21	33760										
USP5	0	genome.wustl.edu	37	chr12	6964674	6964674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gcgagtctacttgcacctccGgcggacccggcgcccggtag	14	16	1	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	6964674	6964674	G	A	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.221	p.R74Q	0.995	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	19	0	0	25	8	23.53	-	-	-	A	6964674	G	A	6964674	3	1	300	1	0	0	0	0	1	0	0	0	17178	1116	39	1	227	1	USP5	12	6964674	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	2484935	6964674	126887221	22	33761										
ALG10B	0	genome.wustl.edu	37	chr12	38714401	38714401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tgttttgtgcttttgtagtaGttaatggtggaattgttatt	11	1	0	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	38714401	38714401	G	A	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	1	known	missense	c.808	p.V270I	0.010	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	139	0	0	180	60	24.9	-	-	-	A	38714401	G	A	38714401	3	1	300	1	0	0	0	0	1	0	0	0	512	1029	36	4	818	4	ALG10B	12	38714401	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	31749727	38714401	95137494	23	33762										
ACVR1B	0	genome.wustl.edu	37	chr12	52379131	52379131	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	atcagagggtggggaccaaaCggtaggagggcctgggactc	18	8	1	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	52379131	52379131	C	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	nonsense	c.1135	p.R379*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	63	0	0	51	38	42.7	-	-	-	T	52379131	C	T	52379131	4	4	300	1	0	0	0	0	0	1	0	0	221	550	19	1	1284	1	ACVR1B	12	52379131	Nonsense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09	13664730	52379131	81472764	24	33763										
PHLDA1	0	genome.wustl.edu	37	chr12	76424820	76424820	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tccacggtcttcatgttggaGaagtgcagttccttgagctt	11	9	2	2			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	76424820	76424820	G	T	SNP	PHLDA1	ENST00000266671	human	ensembl	69_37n	-1	known	missense	c.702	p.F234L	1.000	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289	87	0	0	23	38	62.3	-	-	-	T	76424820	G	T	76424820	3	4	300	1	0	0	0	0	1	0	0	0	11922	933	33	2	507	2	PHLDA1	12	76424820	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09	24045689	76424820	57427075	25	33764										
C14orf37	0	genome.wustl.edu	37	chr14	58598350	58598350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	aagtgcaggggaaatgctggGttcccccaccattattccag	11	11	0	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	14	58598350	58598350	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.1711	p.P571S	0.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	51	0	0	19	71	78.02	-	-	-	A	58598350	G	A	58598350	3	1	300	1	0	0	0	0	1	0	0	0	1783	1261	44	4	633	4	C14orf37	14	58598350	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		58598350	48751190	26	33765										
SNRPN	0	genome.wustl.edu	37	chr15	25222051	25222051	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	ttgctcgggtaccacttgctGgagctgctggaggccctggg	16	11	0	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	15	25222051	25222051	G	T	SNP	SNRPN	ENST00000444203	human	ensembl	69_37n	1	known	nonsense	c.307	p.G103*	1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739	72	0	0	66	30	31.25	-	-	-	T	25222051	G	T	25222051	4	4	300	1	0	0	0	0	0	1	0	0	14959	1349	47	4	309	4	SNRPN	15	25222051	Nonsense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		25222051	77309341	27	33766										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	37	0	0	19	41	68.33	-	-	-	A	7574003	G	A	7574003	4	1	300	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		7574003	73621207	28	33767										
SUPT5H	0	genome.wustl.edu	37	chr19	39955678	39955678	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	agcggggcatctacaaggatGacattgctcaggtgcccggg	15	10	2	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	39955678	39955678	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.865	p.D289N	1.000	smart_KOW,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	27	0	0	27	8	22.86	-	-	-	A	39955678	G	A	39955678	3	1	300	1	0	0	0	0	1	0	0	0	15490	1290	45	2	903	2	SUPT5H	19	39955678	Missense_Mutation	SNP	G	TCGA-AN-A0G0-01A-11W-A050-09		39955678	19173305	29	33768										
PNKP	0	genome.wustl.edu	37	chr19	50370371	50370372	+	Frame_Shift_Del	DEL	GG	GG	-													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	gggtcccctgcccaggaccaGggcttgcccgtccgagggca							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	50370371	50370372	GG	-	DEL	PNKP	ENST00000322344	human	ensembl	69_37n	-1	known	frame_shift_del	c.91_90	p.L31fs	0.141:0.055	superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	11	0	0	8	22	70.97	-	-	-	-	50370372	GG	-	50370371	7	5	300	1	0	1	0	1	0	0	0	0	12221	991	35	0	1538	0	PNKP	19	50370371	Frame_Shift_Del	DEL	GG	TCGA-AN-A0G0-01A-11W-A050-09	10414693	50370371	8758612	30	33769										
BRWD1	0	genome.wustl.edu	37	chr21	40559077	40559078	+	Frame_Shift_Ins	INS	-	-	T													0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tctttataaacattcagtaaINSttttttcttagccgcagcag							TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	21	40559077	40559078	-	T	INS	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6838_6837	p.L2279fs	0.662:0.249	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	55	0	0	25	12	32.43	-	-	-	T	40559078	-	T	40559077	7	5	300	1	0	1	1	0	0	0	0	0	1533	98	4	0	128	0	BRWD1	21	40559077	Frame_Shift_Ins	INS	-	TCGA-AN-A0G0-01A-11W-A050-09		40559077	7570818	31	33770										
USP9X	0	genome.wustl.edu	37	chrX	41076559	41076559	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tcctctttactacaggatttCacacaaagaaagtagtccgt	6	10	2	1			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	41076559	41076559	C	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.6172	p.H2058D	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	117	0	0	34	22	39.29	-	-	-	G	41076559	C	G	41076559	3	3	300	1	0	0	0	0	1	0	0	0	17187	826	29	2	6310	2	USP9X	23	41076559	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09		41076559	114194001	32	33771										
AFF2	0	genome.wustl.edu	37	chrX	148037946	148037946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.09375	3	0.606112594578808	1.60714285714286	4.28571428571429	1.22448979591837	1	1	0	tgcaaactgaaatcctgtccCctctgcgagatcatgagaac	8	12	2	3			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	148037946	148037946	C	G	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.2371	p.P791A	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	183	0	0	73	48	39.67	-	-	-	G	148037946	C	G	148037946	3	3	300	1	0	0	0	0	1	0	0	0	357	623	22	4	2468	4	AFF2	23	148037946	Missense_Mutation	SNP	C	TCGA-AN-A0G0-01A-11W-A050-09	106961387	148037946	7232614	33	33772										
RERE	0	genome.wustl.edu	37	chr1	8421506	8421506	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	ttgacgctgcgactgtctgaActctctccctcaccttcaga	7	15	4	3			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	8421506	8421506	A	C	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.2061	p.S687R	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	38	0	0	82	41	33.33	-	-	-	C	8421506	A	C	8421506	3	2	301	1	0	0	0	0	1	0	0	0	13314	40	2	5	2663	5	RERE	1	8421506	Missense_Mutation	SNP	A	TCGA-AN-A0XL-01A-11D-A10M-09		8421506	240829115	1	33773										
SPATA1	0	genome.wustl.edu	37	chr1	85018771	85018772	+	RNA	INS	-	-	A													0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tgaaaactgaactggcacagINSaaaaaaaaaataatacatct							TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	85018771	85018772	-	A	INS	SPATA1	ENST00000460286	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	49	0	0	27	3	10	-	-	-	A	85018772	-	A	85018771	6	5	301	0	1	1	1	0	0	0	0	0	15089	933	33	0		0	SPATA1	1	85018771	RNA	INS	-	TCGA-AN-A0XL-01A-11D-A10M-09	76597265	85018771	164231850	2	33774										
HIST2H2BF	0	genome.wustl.edu	37	chr1	149783828	149783828	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	ttctgcactttcgtaacagcCtttttggagcccttcttggg	9	11	2	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	149783828	149783828	C	A	SNP	HIST2H2BF	ENST00000427880	human	ensembl	69_37n	-1	known	missense	c.51	p.K17N	0.854	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814	105	1	0.94	207	96	31.68	-	-	-	A	149783828	C	A	149783828	3	1	301	1	0	0	0	0	1	0	0	0	7231	680	24	4	750	4	HIST2H2BF	1	149783828	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09	64765057	149783828	99466793	3	33775										
CD1C	0	genome.wustl.edu	37	chr1	158261934	158261934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	ttctggaaagagcccagaagGcttctttcaggtagctttca	10	9	4	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	158261934	158261934	G	A	SNP	CD1C	ENST00000368170	human	ensembl	69_37n	1	known	missense	c.389	p.G130D	0.001	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1C	HGNC	ENSG00000158481	70	0	0	148	26	14.94	-	-	-	A	158261934	G	A	158261934	3	1	301	1	0	0	0	0	1	0	0	0	3005	1203	42	4	399	4	CD1C	1	158261934	Missense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09	8478106	158261934	90988687	4	33776										
QSOX1	0	genome.wustl.edu	37	chr1	180159688	180159689	+	Frame_Shift_Ins	INS	-	-	A													0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gactgtgcaggcagctcggcINSaaaatgtagaccactcacag							TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	180159688	180159689	-	A	INS	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	frame_shift_ins	c.1261_1262	p.N422fs	0.003:0.001	pfam_Evr1_Alr,superfamily_Evr1_Alr	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	23	0	0	105	28	21.05	-	-	-	A	180159689	-	A	180159688	7	5	301	1	0	1	1	0	0	0	0	0	12966	711	25	0	1299	0	QSOX1	1	180159688	Frame_Shift_Ins	INS	-	TCGA-AN-A0XL-01A-11D-A10M-09	21897754	180159688	69090933	5	33777										
GPATCH2	0	genome.wustl.edu	37	chr1	217688214	217688214	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	accattctcttgttacccacTgggccaggaatgggtaccta	9	12	1	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	217688214	217688214	T	G	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	silent	c.1116	p.P372	0.191	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	103	0	0	63	19	23.17	-	-	-	G	217688214	T	G	217688214	2	3	301	1	0	0	0	0	0	0	0	1	6641	1567	55	5		5	GPATCH2	1	217688214	Silent	SNP	T	TCGA-AN-A0XL-01A-11D-A10M-09	37528526	217688214	31562407	6	33778										
TARBP1	0	genome.wustl.edu	37	chr1	234566040	234566040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tctgaatctgacttccaactGttggctcctgaaaaggaaat	8	9	2	3			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	234566040	234566040	G	T	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.2402	p.T801K	0.001	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	8	0	0	21	7	25	-	-	-	T	234566040	G	T	234566040	3	4	301	1	0	0	0	0	1	0	0	0	15647	1377	48	4	2527	4	TARBP1	1	234566040	Missense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09	16877826	234566040	14684581	7	33779										
CHL1	0	genome.wustl.edu	37	chr3	436516	436516	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gcacttcacagggctgtggaAaaccgatcacggaggaaagc	13	10	2	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	436516	436516	A	T	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	nonsense	c.3055	p.K1019*	0.053	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	86	0	0	87	16	15.53	-	-	-	T	436516	A	T	436516	4	4	301	1	0	0	0	0	0	1	0	0	3378	15	1	5	3141	5	CHL1	3	436516	Nonsense_Mutation	SNP	A	TCGA-AN-A0XL-01A-11D-A10M-09		436516	197585914	8	33780										
DNAJB8	0	genome.wustl.edu	37	chr3	128181429	128181429	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	ttgagctgctccttgccgttCacagtcaccgacttgagctg	10	13	2	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	128181429	128181429	C	T	SNP	DNAJB8	ENST00000319153	human	ensembl	69_37n	-1	known	silent	c.660	p.V220	0.724	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB8	HGNC	ENSG00000179407	8	0	0	41	13	24.07	-	-	-	T	128181429	C	T	128181429	2	4	301	1	0	0	0	0	0	0	0	1	4661	813	29	2		2	DNAJB8	3	128181429	Silent	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09	127744913	128181429	69841001	9	33781										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	79	0	0	79	73	48.03	-	-	-	G	178952085	A	G	178952085	3	3	301	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AN-A0XL-01A-11D-A10M-09	50770656	178952085	19070345	10	33782										
ADH1B	0	genome.wustl.edu	37	chr4	100232778	100232778	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	acccctacgatgacgcttgtGccacatgcctcatgacaaca	7	15	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	4	100232778	100232778	G	T	SNP	ADH1B	ENST00000305046	human	ensembl	69_37n	-1	known	silent	c.864	p.G288	0.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1B	HGNC	ENSG00000196616	156	0	0	163	75	31.51	-	-	-	T	100232778	G	T	100232778	2	4	301	1	0	0	0	0	0	0	0	1	308	1306	46	4		4	ADH1B	4	100232778	Silent	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09		100232778	90921498	11	33783										
INHBA	0	genome.wustl.edu	37	chr7	41729515	41729515	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tagccagagggagcaatgatCcagtcattccagccgatgtc	11	11	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	7	41729515	41729515	C	T	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	nonsense	c.1014	p.W338*	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	25	0	0	56	24	30	-	-	-	T	41729515	C	T	41729515	4	4	301	1	0	0	0	0	0	1	0	0	7795	856	30	2	270	2	INHBA	7	41729515	Nonsense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09		41729515	117409148	12	33784										
CROT	0	genome.wustl.edu	37	chr7	87005203	87005203	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gctttgttagaaaaaattcaGagtagtttactggtatattc	8	4	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	7	87005203	87005203	G	A	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	silent	c.810	p.Q270	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	144	0	0	155	36	18.85	-	-	-	A	87005203	G	A	87005203	2	1	301	1	0	0	0	0	0	0	0	1	3924	933	33	2		2	CROT	7	87005203	Silent	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09	45275688	87005203	72133460	13	33785										
MTERFD1	0	genome.wustl.edu	37	chr8	97263275	97263277	+	In_Frame_Del	DEL	AGG	AGG	-													0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tttcaaaatccagtctcagaAggaggtttgctgcttctgga							TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	8	97263275	97263277	AGG	-	DEL	MTERFD1	ENST00000287025	human	ensembl	69_37n	-1	known	in_frame_del	c.536_534	p.L180in_frame_del	1.000:1.000:0.998	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD1	HGNC	ENSG00000156469	249	0	0	234	38	13.97	-	-	-	-	97263277	AGG	-	97263275	7	5	301	1	0	1	0	1	0	0	0	0	9991	72	3	0	737	0	MTERFD1	8	97263275	In_Frame_Del	DEL	AGG	TCGA-AN-A0XL-01A-11D-A10M-09		97263275	49100747	14	33786										
IFNE	0	genome.wustl.edu	37	chr9	21481249	21481249	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	caggtaatcatggatccttcGgaagtacattttaacttgta	8	7	1	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	9	21481249	21481249	G	A	SNP	IFNE	ENST00000448696	human	ensembl	69_37n	-1	known	nonsense	c.445	p.R149*	0.142	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNE	HGNC	ENSG00000184995	110	0	0	124	45	26.63	-	-	-	A	21481249	G	A	21481249	4	1	301	1	0	0	0	0	0	1	0	0	7601	1124	39	1	185	1	IFNE	9	21481249	Nonsense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09		21481249	119732182	15	33787										
TCF7L2	0	genome.wustl.edu	37	chr10	114849224	114849224	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	taccccccctcagacttcacTgtcagcactcaagtcttcag	5	17	6	1			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	10	114849224	114849224	T	C	SNP	TCF7L2	ENST00000355717	human	ensembl	69_37n	1	known	silent	c.549	p.T183	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	65	0	0	53	22	29.33	-	-	-	C	114849224	T	C	114849224	2	2	301	1	0	0	0	0	0	0	0	1	15793	1567	55	5		5	TCF7L2	10	114849224	Silent	SNP	T	TCGA-AN-A0XL-01A-11D-A10M-09		114849224	20685523	16	33788										
MKI67	0	genome.wustl.edu	37	chr10	129905447	129905447	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	cactggagttcccataaatgCgtagatgtttttctcaccac	7	11	1	1			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	10	129905447	129905447	C	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.4657	p.A1553S	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	347	0	0	339	121	26.3	-	-	-	A	129905447	C	A	129905447	3	1	301	1	0	0	0	0	1	0	0	0	9669	768	27	3	5125	3	MKI67	10	129905447	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09	15056223	129905447	5629300	17	33789										
BBOX1	0	genome.wustl.edu	37	chr11	27148982	27148982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	cttcgtatcttaaggcagagGgtggagaatggaaactgaag	14	5	1	3			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	11	27148982	27148982	G	A	SNP	BBOX1	ENST00000263182	human	ensembl	69_37n	1	known	silent	c.1146	p.R382	0.000	NULL	pfam_Taurine_dOase,pfam_DUF971,tigrfam_2-oxoglut_dOase	-	no_errors	BBOX1	HGNC	ENSG00000129151	74	0	0	50	76	60.32	-	-	-	A	27148982	G	A	27148982	2	1	301	1	0	0	0	0	0	0	0	1	1338	1223	43	4		4	BBOX1	11	27148982	Silent	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09		27148982	107857534	18	33790										
ARHGEF17	0	genome.wustl.edu	37	chr11	73076908	73076908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gcctcggccagggacacaccGgccacgtccgcttcttggct	12	17	1	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	11	73076908	73076908	G	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	missense	c.5911	p.G1971S	1.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	11	0	0	29	6	17.14	-	-	-	A	73076908	G	A	73076908	3	1	301	1	0	0	0	0	1	0	0	0	902	1116	39	1	5989	1	ARHGEF17	11	73076908	Missense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09	45927926	73076908	61929608	19	33791										
AKAP13	0	genome.wustl.edu	37	chr15	86124520	86124520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tggagtgaagaacactcaatCccagggaaaaactagtgcct	10	9	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	15	86124520	86124520	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.3221	p.S1074F	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	22	0	0	22	7	23.33	-	-	-	T	86124520	C	T	86124520	3	4	301	1	0	0	0	0	1	0	0	0	449	855	30	2	3243	2	AKAP13	15	86124520	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09		86124520	16406872	20	33792										
ANPEP	0	genome.wustl.edu	37	chr15	90347735	90347736	+	Frame_Shift_Ins	INS	-	-	G													0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	actcacctgattttgggagtINSgggtagggtgtgtcataatg							TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	15	90347735	90347736	-	G	INS	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1011_1010	p.L338fs	0.115:1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	37	0	0	67	12	15.19	-	-	-	G	90347736	-	G	90347735	7	5	301	1	0	1	1	0	0	0	0	0	709	1683	59	0	1960	0	ANPEP	15	90347735	Frame_Shift_Ins	INS	-	TCGA-AN-A0XL-01A-11D-A10M-09	4223215	90347735	12183657	21	33793										
RNF157	0	genome.wustl.edu	37	chr17	74154520	74154520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	tctgagagagctgtgtctccGactcgctgcaggaatgctca	12	11	3	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	17	74154520	74154520	G	A	SNP	RNF157	ENST00000269391	human	ensembl	69_37n	-1	known	missense	c.1367	p.S456L	0.998	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576	35	0	0	74	25	25.25	-	-	-	A	74154520	G	A	74154520	3	1	301	1	0	0	0	0	1	0	0	0	13540	1059	37	1	700	1	RNF157	17	74154520	Missense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09		74154520	7040690	22	33794										
CLEC17A	0	genome.wustl.edu	37	chr19	14710534	14710534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	catcccttctgacagtgactGgcatggcagggctagctggc	13	12	1	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	19	14710534	14710534	G	A	SNP	CLEC17A	ENST00000417570	human	ensembl	69_37n	1	known	missense	c.652	p.G218S	0.885	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912	23	0	0	40	9	18.37	-	-	-	A	14710534	G	A	14710534	3	1	301	1	0	0	0	0	1	0	0	0	3531	1348	47	4	639	4	CLEC17A	19	14710534	Missense_Mutation	SNP	G	TCGA-AN-A0XL-01A-11D-A10M-09		14710534	44418449	23	33795										
COMP	0	genome.wustl.edu	37	chr19	18895094	18895094	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gcgggtccttccacagcagcCgcacctgggactctgtgtct	12	15	2	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	19	18895094	18895094	C	T	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.1994	p.R665Q	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	10	0	0	32	14	30.43	-	-	-	T	18895094	C	T	18895094	3	4	301	1	0	0	0	0	1	0	0	0	3754	652	23	1	291	1	COMP	19	18895094	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09	4184560	18895094	40233889	24	33796										
GABPA	0	genome.wustl.edu	37	chr21	27141488	27141488	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gctccatggaattgcccagcCagtcacagcagtagctctgg	11	13	2	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	21	27141488	27141488	C	G	SNP	GABPA	ENST00000354828	human	ensembl	69_37n	1	known	missense	c.1310	p.P437R	1.000	pirsf_TF_GA-bd_asu	pfam_GABP_asu_N,pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_TF_GA-bd_asu,prints_Ets,pfscan_Ets	-	no_errors	GABPA	HGNC	ENSG00000154727	46	0	0	41	17	29.31	-	-	-	G	27141488	C	G	27141488	3	3	301	1	0	0	0	0	1	0	0	0	6206	594	21	4	1344	4	GABPA	21	27141488	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09		27141488	20988407	25	33797										
CHM	0	genome.wustl.edu	37	chrX	85282501	85282501	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gttgataaacttacgaatcaAcatgcagaactctccggcca	7	11	2	2			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	X	85282501	85282501	A	G	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.110	p.V37A	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	68	0	0	66	28	29.47	-	-	-	G	85282501	A	G	85282501	3	3	301	1	0	0	0	0	1	0	0	0	3379	43	2	5	1930	5	CHM	23	85282501	Missense_Mutation	SNP	A	TCGA-AN-A0XL-01A-11D-A10M-09		85282501	69988059	26	33798										
CSTF2	0	genome.wustl.edu	37	chrX	100083082	100083082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.904872247913239	1.00526870389884	0	1.08904109589041	0.333333333333333	0.930327025915261	0	gtggaccagtgtccatggaaCgggggcaaggtaaataaata	14	6	0	0			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	X	100083082	100083082	C	T	SNP	CSTF2	ENST00000415585	human	ensembl	69_37n	1	known	missense	c.880	p.R294W	0.762	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811	211	0	0	220	75	25.34	-	-	-	T	100083082	C	T	100083082	3	4	301	1	0	0	0	0	1	0	0	0	4016	527	19	1	910	1	CSTF2	23	100083082	Missense_Mutation	SNP	C	TCGA-AN-A0XL-01A-11D-A10M-09	14800581	100083082	55187478	27	33799										
PEX14	0	genome.wustl.edu	37	chr1	10678420	10678420	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcccgatggcgagattacggCgccctggccatcatcatggc	12	14	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	10678420	10678420	C	T	SNP	PEX14	ENST00000356607	human	ensembl	69_37n	1	known	silent	c.330	p.G110	0.581	pfam_Pex14_N	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655	53	0	0	17	9	34.62	-	-	-	T	10678420	C	T	10678420	2	4	302	1	0	0	0	0	0	0	0	1	11816	755	27	1		1	PEX14	1	10678420	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		10678420	238572201	1	33800										
TMEM82	0	genome.wustl.edu	37	chr1	16069647	16069647	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gctgccctcgtggtgctcgaGttctccctccgggccgtgtc	13	16	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	16069647	16069647	G	C	SNP	TMEM82	ENST00000375782	human	ensembl	69_37n	1	known	missense	c.294	p.E98D	1.000	NULL	NULL	-	no_errors	TMEM82	HGNC	ENSG00000162460	67	0	0	34	7	17.07	-	-	-	C	16069647	G	C	16069647	3	2	302	1	0	0	0	0	1	0	0	0	16301	1020	36	4	304	4	TMEM82	1	16069647	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	5391227	16069647	233180974	2	33801										
SPEN	0	genome.wustl.edu	37	chr1	16255132	16255132	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aaagaacgaacttttgatccGgagagagtggagagagagag	15	4	0	5			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	16255132	16255132	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.2397	p.P799	0.003	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	52	0	0	66	15	18.52	-	-	-	C	16255132	G	C	16255132	2	2	302	1	0	0	0	0	0	0	0	1	15129	1103	39	3		3	SPEN	1	16255132	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	185485	16255132	232995489	3	33802										
ZMYM4	0	genome.wustl.edu	37	chr1	35835672	35835672	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aaaaaactcaagagggggaaCtgaaaattagtgctgtgttt	11	4	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	35835672	35835672	C	G	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.883	p.L295V	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	86	0	0	90	12	11.76	-	-	-	G	35835672	C	G	35835672	3	3	302	1	0	0	0	0	1	0	0	0	17798	564	20	4	905	4	ZMYM4	1	35835672	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	19580540	35835672	213414949	4	33803										
MACF1	0	genome.wustl.edu	37	chr1	39907664	39907664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	taacactgtgattaaactctGcaccatgccccctgttggca	7	13	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	39907664	39907664	G	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.12536	p.C4179Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	304	0	0	207	47	18.5	-	-	-	A	39907664	G	A	39907664	3	1	302	1	0	0	0	0	1	0	0	0	9211	1319	46	4	18969	4	MACF1	1	39907664	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	4071992	39907664	209342957	5	33804										
CLDN19	0	genome.wustl.edu	37	chr1	43200803	43200803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aggcgggcaatttaacaactGgtctgaaagtcaaaagagag	12	6	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	43200803	43200803	G	T	SNP	CLDN19	ENST00000296387	human	ensembl	69_37n	-1	known	missense	c.629	p.P210Q	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007	240	0	0	148	25	14.45	-	-	-	T	43200803	G	T	43200803	3	4	302	1	0	0	0	0	1	0	0	0	3510	1348	47	4	49	4	CLDN19	1	43200803	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	3293139	43200803	206049818	6	33805										
ERMAP	0	genome.wustl.edu	37	chr1	43296678	43296678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gagatgcccaagagggaagtGtcactctgcagatccttgac	12	10	2	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	43296678	43296678	G	A	SNP	ERMAP	ENST00000372514	human	ensembl	69_37n	1	known	missense	c.325	p.V109I	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010	147	0	0	92	15	14.02	-	-	-	A	43296678	G	A	43296678	3	1	302	1	0	0	0	0	1	0	0	0	5271	1377	48	4	331	4	ERMAP	1	43296678	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	95875	43296678	205953943	7	33806										
NRD1	0	genome.wustl.edu	37	chr1	52344078	52344078	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cggctgttctcgcccagatcCtgtccattgggctgcaggtc	12	14	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	52344078	52344078	C	G	SNP	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	missense	c.210	p.Q70H	1.000	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	NRD1	HGNC	ENSG00000078618	65	0	0	43	5	10.42	-	-	-	G	52344078	C	G	52344078	3	3	302	1	0	0	0	0	1	0	0	0	10718	680	24	4	3581	4	NRD1	1	52344078	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	9047400	52344078	196906543	8	33807										
TM2D1	0	genome.wustl.edu	37	chr1	62165923	62165923	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agactcagtaaatcccttaaCctctctggtgacagtttcct	6	12	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	62165923	62165923	C	A	SNP	TM2D1	ENST00000371177	human	ensembl	69_37n	-1	known	missense	c.463	p.V155F	0.884	NULL	pfam_TM2	-	no_errors	TM2D1	HGNC	ENSG00000162604	156	0	0	116	26	18.31	-	-	-	A	62165923	C	A	62165923	3	1	302	1	0	0	0	0	1	0	0	0	16058	522	18	4		4	TM2D1	1	62165923	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	9821845	62165923	187084698	9	33808										
IVL	0	genome.wustl.edu	37	chr1	152883341	152883341	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gaggggcagctggagcacctGgagcaccaggaagggcagct	18	10	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	152883341	152883341	G	T	SNP	IVL	ENST00000368764	human	ensembl	69_37n	1	known	silent	c.1068	p.L356	0.007	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207	61	0	0	63	9	12.5	-	-	-	T	152883341	G	T	152883341	2	4	302	1	0	0	0	0	0	0	0	1	7983	1335	47	4		4	IVL	1	152883341	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	90717418	152883341	96367280	10	33809										
UBQLN4	0	genome.wustl.edu	37	chr1	156021546	156021546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agtgagcccgtccttgattcCgtgctggttcagtgtgtccc	12	12	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	156021546	156021546	C	T	SNP	UBQLN4	ENST00000368309	human	ensembl	69_37n	-1	known	missense	c.211	p.G71R	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803	123	0	0	117	19	13.97	-	-	-	T	156021546	C	T	156021546	3	4	302	1	0	0	0	0	1	0	0	0	16996	661	23	1	1634	1	UBQLN4	1	156021546	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	3138205	156021546	93229075	11	33810										
CD5L	0	genome.wustl.edu	37	chr1	157804422	157804422	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ggcccggaggctccagcctgTctggcacacggtataccact	12	15	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	157804422	157804422	T	C	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	missense	c.493	p.T165A	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	87	0	0	57	12	17.39	-	-	-	C	157804422	T	C	157804422	3	2	302	1	0	0	0	0	1	0	0	0	3056	1667	58	5	562	5	CD5L	1	157804422	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	1782876	157804422	91446199	12	33811										
ITLN1	0	genome.wustl.edu	37	chr1	160850397	160850397	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cgctggccatagggtgagtaAtaagatgctgttttctgggc	14	7	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	160850397	160850397	A	G	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	silent	c.666	p.Y222	0.981	superfamily_Fibrinogen_a/b/g_C	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	114	0	0	156	22	12.36	-	-	-	G	160850397	A	G	160850397	2	3	302	1	0	0	0	0	0	0	0	1	7964	108	4	5		5	ITLN1	1	160850397	Silent	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	3045975	160850397	88400224	13	33812										
ASTN1	0	genome.wustl.edu	37	chr1	176857332	176857332	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agagagctcatggtagcctcCtgcaagagctgcataagaga	12	9	1	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	176857332	176857332	C	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2973	p.Q991H	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	77	0	0	57	8	12.31	-	-	-	A	176857332	C	A	176857332	3	1	302	1	0	0	0	0	1	0	0	0	1068	680	24	4	963	4	ASTN1	1	176857332	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	16006935	176857332	72393289	14	33813										
CHI3L1	0	genome.wustl.edu	37	chr1	203154456	203154456	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	catctgggaagcagctcccaTcgccttcccggtactgggac	11	15	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	203154456	203154456	T	A	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.113	p.D38V	0.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	114	0	0	138	17	10.97	-	-	-	A	203154456	T	A	203154456	3	1	302	1	0	0	0	0	1	0	0	0	3369	1435	50	5	1070	5	CHI3L1	1	203154456	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	26297124	203154456	46096165	15	33814										
OR2M2	0	genome.wustl.edu	37	chr1	248343859	248343859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	actaatcctctcatgcaatgAcacatcaatatttgaagagg	6	9	2	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	1	248343859	248343859	A	G	SNP	OR2M2	ENST00000359682	human	ensembl	69_37n	1	known	missense	c.572	p.D191G	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M2	HGNC	ENSG00000198601	305	0	0	436	60	12.1	-	-	-	G	248343859	A	G	248343859	3	3	302	1	0	0	0	0	1	0	0	0	11083	275	10	5	574	5	OR2M2	1	248343859	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	45189403	248343859	906762	16	33815										
EFEMP1	0	genome.wustl.edu	37	chr2	56144946	56144946	+	Frame_Shift_Del	DEL	G	G	-													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gcatttcagggcctgcgactGcagcagcactggccacaaaa							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	2	56144946	56144946	G	-	DEL	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	frame_shift_del	c.371	p.A124fs	0.986	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	74	0	0	82	29	25.66	-	-	-	-	56144946	G	-	56144946	7	5	302	1	0	1	0	1	0	0	0	0	4976	1319	46	0	1142	0	EFEMP1	2	56144946	Frame_Shift_Del	DEL	G	TCGA-AN-A0XN-01A-21D-A10G-09		56144946	187054427	17	33816	275	2								
EFEMP1	0	genome.wustl.edu	37	chr2	56144947	56144947	+	Missense_Mutation	SNP	C	C	A													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	catttcagggcctgcgactgCagcagcactggccacaaaac							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	2	56144947	56144947	C	A	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	missense	c.370	p.A124S	0.992	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	74	0	0	82	30	26.79	-	-	-	A	56144947	C	A	56144947	3	1	302	1	0	0	0	0	1	0	0	0	4976	710	25	4	1143	4	EFEMP1	2	56144947	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	1	56144947	187054426	18	33817	275	2								
FAM161A	0	genome.wustl.edu	37	chr2	62081050	62081050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttcgtcctccaagatcgcctCcgctgccgccagggccttta	9	17	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	2	62081050	62081050	C	T	SNP	FAM161A	ENST00000405894	human	ensembl	69_37n	-1	known	missense	c.127	p.E43K	0.001	NULL	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264	50	0	0	40	6	13.04	-	-	-	T	62081050	C	T	62081050	3	4	302	1	0	0	0	0	1	0	0	0	5512	864	30	2	1879	2	FAM161A	2	62081050	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	5936103	62081050	181118323	19	33818										
HS6ST1	0	genome.wustl.edu	37	chr2	129026227	129026227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ggccagcatgcgcacctggcGgttgttggccaggttgtacg	16	11	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	2	129026227	129026227	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.745	p.R249S	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	14	0	0	12	4	25	-	-	-	T	129026227	G	T	129026227	3	4	302	1	0	0	0	0	1	0	0	0	7421	1116	39	3	494	3	HS6ST1	2	129026227	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	66945177	129026227	114173146	20	33819										
STK11IP	0	genome.wustl.edu	37	chr2	220473482	220473484	+	In_Frame_Del	DEL	CCC	CCC	-													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agctgagatagagccggaggCccaggcccagaggtcgccca							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	2	220473482	220473484	CCC	-	DEL	STK11IP	ENST00000456909	human	ensembl	69_37n	1	novel	in_frame_del	c.1781_1783	p.AQ594in_frame_delE	0.000:0.000:0.000	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	21	0	0	24	24	50	-	-	-	-	220473484	CCC	-	220473482	7	5	302	1	0	1	0	1	0	0	0	0	15379	739	26	0	1872	0	STK11IP	2	220473482	In_Frame_Del	DEL	CCC	TCGA-AN-A0XN-01A-21D-A10G-09	91447255	220473482	22725891	21	33820										
ARL8B	0	genome.wustl.edu	37	chr3	5220352	5220352	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttcccctctatctttagataTcacacttcagtggcttattc	4	12	4	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	5220352	5220352	T	G	SNP	ARL8B	ENST00000256496	human	ensembl	69_37n	1	known	missense	c.515	p.I172S	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL8B	HGNC	ENSG00000134108	325	0	0	390	60	13.3	-	-	-	G	5220352	T	G	5220352	3	3	302	1	0	0	0	0	1	0	0	0	951	1435	50	5	541	5	ARL8B	3	5220352	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09		5220352	192802078	22	33821										
NEK10	0	genome.wustl.edu	37	chr3	27394317	27394317	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agttacctgatggtgatttcTtgctgtttatcagttgattt	9	5	2	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	27394317	27394317	T	G	SNP	NEK10	ENST00000341435	human	ensembl	69_37n	-1	known	missense	c.57	p.Q19H	0.993	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	385	0	0	283	130	31.48	-	-	-	G	27394317	T	G	27394317	3	3	302	1	0	0	0	0	1	0	0	0	10394	1606	56	5	2173	5	NEK10	3	27394317	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	22173965	27394317	170628113	23	33822										
SUSD5	0	genome.wustl.edu	37	chr3	33194513	33194513	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgtccaaagaagtcttcagaCagcaggtatgggaagctatc	11	8	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	33194513	33194513	C	A	SNP	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	silent	c.1611	p.L537	0.749	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	248	0	0	178	31	14.83	-	-	-	A	33194513	C	A	33194513	2	1	302	1	0	0	0	0	0	0	0	1	15502	465	17	4		4	SUSD5	3	33194513	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	5800196	33194513	164827917	24	33823										
DOCK3	0	genome.wustl.edu	37	chr3	51378786	51378786	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cggaaggagggactgtgccgGaagatcattcactacttcaa	12	9	3	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	51378786	51378786	G	T	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	silent	c.3885	p.R1295	0.666	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	85	0	0	58	16	21.62	-	-	-	T	51378786	G	T	51378786	2	4	302	1	0	0	0	0	0	0	0	1	4723	1161	41	2		2	DOCK3	3	51378786	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	18184273	51378786	146643644	25	33824										
FLNB	0	genome.wustl.edu	37	chr3	58124079	58124079	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gttgatgccaagactgccggGaagggtaaagtgacctgcac	14	9	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	58124079	58124079	G	C	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	silent	c.4932	p.G1644	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	124	0	0	42	15	26.32	-	-	-	C	58124079	G	C	58124079	2	2	302	1	0	0	0	0	0	0	0	1	5980	1161	41	2		2	FLNB	3	58124079	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	6745293	58124079	139898351	26	33825										
PLOD2	0	genome.wustl.edu	37	chr3	145841966	145841966	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tttggctgactgcataaatcGatggaatccatcactttctt	7	9	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	145841966	145841966	G	A	SNP	PLOD2	ENST00000282903	human	ensembl	69_37n	-1	known	nonsense	c.160	p.R54*	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	345	0	0	261	51	16.35	-	-	-	A	145841966	G	A	145841966	4	1	302	1	0	0	0	0	0	1	0	0	12176	1066	37	1	2192	1	PLOD2	3	145841966	Nonsense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	87717887	145841966	52180464	27	33826										
IGSF10	0	genome.wustl.edu	37	chr3	151154674	151154674	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aggcatctcccatgtgatttCtggcttgggaactcccaagg	11	11	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	151154674	151154674	C	G	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.7675	p.E2559Q	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	70	0	0	48	32	40	-	-	-	G	151154674	C	G	151154674	3	3	302	1	0	0	0	0	1	0	0	0	7651	922	32	2	200	2	IGSF10	3	151154674	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	5312708	151154674	46867756	28	33827										
PAK2	0	genome.wustl.edu	37	chr3	196509620	196509620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aagaccctttgtcagccaatCacagtttgaaacctttgccc	6	13	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	3	196509620	196509620	C	G	SNP	PAK2	ENST00000327134	human	ensembl	69_37n	1	known	missense	c.103	p.H35D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK2	HGNC	ENSG00000180370	83	0	0	121	21	14.69	-	-	-	G	196509620	C	G	196509620	3	3	302	1	0	0	0	0	1	0	0	0	11474	826	29	2	105	2	PAK2	3	196509620	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	45354946	196509620	1512810	29	33828										
KDR	0	genome.wustl.edu	37	chr4	55979642	55979642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcggtttacaagtttcttatGctgatgctgaaaaaaagagt	9	5	1	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	4	55979642	55979642	G	A	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.805	p.H269Y	0.020	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	215	1	0.46	170	42	19.81	-	-	-	A	55979642	G	A	55979642	3	1	302	1	0	0	0	0	1	0	0	0	8192	1319	46	4	3361	4	KDR	4	55979642	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		55979642	135174634	30	33829										
AFF1	0	genome.wustl.edu	37	chr4	88029327	88029327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gcagtgctccacagtcccttCcagaaccagtggcatcagca	9	15	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	4	88029327	88029327	C	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.1393	p.P465S	0.169	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	165	0	0	94	18	16.07	-	-	-	T	88029327	C	T	88029327	3	4	302	1	0	0	0	0	1	0	0	0	356	855	30	2	1452	2	AFF1	4	88029327	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	32049685	88029327	103124949	31	33830										
SLC6A19	0	genome.wustl.edu	37	chr5	1219062	1219062	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttcatcgtcttcaccgaggcCatcaccaagatgccgttgtc	8	14	4	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	5	1219062	1219062	C	T	SNP	SLC6A19	ENST00000304460	human	ensembl	69_37n	1	known	silent	c.1218	p.A406	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358	375	0	0	328	45	12.06	-	-	-	T	1219062	C	T	1219062	2	4	302	1	0	0	0	0	0	0	0	1	14771	581	21	4		4	SLC6A19	5	1219062	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		1219062	179696198	32	33831										
DNAH5	0	genome.wustl.edu	37	chr5	13866371	13866371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ctggcttcctggggcttcaaGccgctagccattggaccatt	11	13	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	5	13866371	13866371	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.4074	p.G1358	0.994	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	56	0	0	77	40	33.9	-	-	-	A	13866371	G	A	13866371	2	1	302	1	0	0	0	0	0	0	0	1	4640	958	34	4		4	DNAH5	5	13866371	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	12647309	13866371	167048889	33	33832										
DNAH5	0	genome.wustl.edu	37	chr5	13902205	13902205	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tagagcttgatttgtgttttGaatctttgcaaatgtaacat	8	4	1	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	5	13902205	13902205	G	C	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1687	p.Q563E	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	119	0	0	144	130	47.45	-	-	-	C	13902205	G	C	13902205	3	2	302	1	0	0	0	0	1	0	0	0	4640	1299	45	2	12455	2	DNAH5	5	13902205	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	35834	13902205	167013055	34	33833										
EGFLAM	0	genome.wustl.edu	37	chr5	38431296	38431296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	caggagtgaagatcccctcaCcctgggcaactggcacgagc	12	14	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	5	38431296	38431296	C	A	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	missense	c.2072	p.T691N	0.485	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	211	0	0	81	45	35.71	-	-	-	A	38431296	C	A	38431296	3	1	302	1	0	0	0	0	1	0	0	0	5001	507	18	4	2144	4	EGFLAM	5	38431296	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	24529091	38431296	142483964	35	33834										
ZNF131	0	genome.wustl.edu	37	chr5	43174618	43174618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	taatacacactggagataaaCccaaccattgtactttatgt	5	9	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	5	43174618	43174618	C	A	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.1255	p.P419T	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	58	0	0	82	20	19.61	-	-	-	A	43174618	C	A	43174618	3	1	302	1	0	0	0	0	1	0	0	0	17817	507	18	4	1179	4	ZNF131	5	43174618	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	4743322	43174618	137740642	36	33835										
SLC29A1	0	genome.wustl.edu	37	chr6	44195040	44195040	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcagccagggaaaaccgagaAcaccatcaccatgacaacca	7	14	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	6	44195040	44195040	A	G	SNP	SLC29A1	ENST00000313248	human	ensembl	69_37n	1	known	missense	c.227	p.N76S	0.000	NULL	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A1	HGNC	ENSG00000112759	187	0	0	94	21	18.26	-	-	-	G	44195040	A	G	44195040	3	3	302	1	0	0	0	0	1	0	0	0	14623	58	2	5		5	SLC29A1	6	44195040	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09		44195040	126920027	37	33836										
EFHC1	0	genome.wustl.edu	37	chr6	52303141	52303141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	atttccaagaagatgttcctAtgtcaactgaggaacagtat	8	7	1	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	6	52303141	52303141	A	G	SNP	EFHC1	ENST00000371068	human	ensembl	69_37n	1	known	missense	c.325	p.M109V	0.000	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC1	HGNC	ENSG00000096093	70	0	0	67	14	17.07	-	-	-	G	52303141	A	G	52303141	3	3	302	1	0	0	0	0	1	0	0	0	4981	449	16	5	345	5	EFHC1	6	52303141	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	8108101	52303141	118811926	38	33837										
AHI1	0	genome.wustl.edu	37	chr6	135776985	135776985	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aagtcttgattttaactgttTaaaatcatatggctgggtca	8	5	3	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	6	135776985	135776985	T	C	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.1231	p.K411E	1.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	89	0	0	117	20	14.6	-	-	-	C	135776985	T	C	135776985	3	2	302	1	0	0	0	0	1	0	0	0	413	1763	61	5	2496	5	AHI1	6	135776985	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	83473844	135776985	35338082	39	33838										
PLEKHG1	0	genome.wustl.edu	37	chr6	151055039	151055039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cagagggacaaccccgccacGgggcaacagaacgcggatga	14	13	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	6	151055039	151055039	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	silent	c.222	p.T74	0.011	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	38	0	0	32	11	25.58	-	-	-	A	151055039	G	A	151055039	2	1	302	1	0	0	0	0	0	0	0	1	12142	1103	39	1		1	PLEKHG1	6	151055039	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	15278054	151055039	20060028	40	33839										
SYNE1	0	genome.wustl.edu	37	chr6	152737562	152737562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ggtaggttctttcaatcgctCtttgtcagtcctttcttcaa	7	10	6	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	6	152737562	152737562	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.6010	p.E2004K	0.989	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	201	0	0	217	29	11.79	-	-	-	T	152737562	C	T	152737562	3	4	302	1	0	0	0	0	1	0	0	0	15537	922	32	2	20880	2	SYNE1	6	152737562	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	1682523	152737562	18377505	41	33840										
PKD1L1	0	genome.wustl.edu	37	chr7	47897212	47897212	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcagcttgtacctgcccaggAgcttggctccctggatatgg	12	12	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	7	47897212	47897212	A	G	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	silent	c.4581	p.A1527	0.027	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	66	0	0	62	12	16.22	-	-	-	G	47897212	A	G	47897212	2	3	302	1	0	0	0	0	0	0	0	1	12038	291	11	5		5	PKD1L1	7	47897212	Silent	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09		47897212	111241451	42	33841										
OR2AE1	0	genome.wustl.edu	37	chr7	99474106	99474106	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cgccacataccaacttcacaAcagctgggaactcacagtag	7	14	2	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	7	99474106	99474106	A	C	SNP	OR2AE1	ENST00000316368	human	ensembl	69_37n	-1	known	missense	c.551	p.V184G	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AE1	HGNC	ENSG00000244623	83	0	0	70	9	11.39	-	-	-	C	99474106	A	C	99474106	3	2	302	1	0	0	0	0	1	0	0	0	11056	43	2	5	424	5	OR2AE1	7	99474106	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	51576894	99474106	59664557	43	33842										
NRF1	0	genome.wustl.edu	37	chr7	129297253	129297253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	catagaagcacatgcagtggCccagcaagtgcagcaggtcc	12	12	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	7	129297253	129297253	C	T	SNP	NRF1	ENST00000393231	human	ensembl	69_37n	1	known	missense	c.62	p.A21V	1.000	NULL	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459	83	0	0	59	14	19.18	-	-	-	T	129297253	C	T	129297253	3	4	302	1	0	0	0	0	1	0	0	0	10719	739	26	4	64	4	NRF1	7	129297253	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	29823147	129297253	29841410	44	33843										
TGS1	0	genome.wustl.edu	37	chr8	56699101	56699101	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	actattgtggcaaagttggcAagaaaaacatccgggtcaag	11	7	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	8	56699101	56699101	A	T	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.644	p.Q215L	1.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	213	0	0	282	41	12.69	-	-	-	T	56699101	A	T	56699101	3	4	302	1	0	0	0	0	1	0	0	0	15932	130	5	5	658	5	TGS1	8	56699101	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09		56699101	89664921	45	33844										
RUNX1T1	0	genome.wustl.edu	37	chr8	92982889	92982889	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttcccaagatgcctcacctcGcttgaatcctcctgctgatt	6	15	1	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	8	92982889	92982889	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	silent	c.1569	p.S523	0.962	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	95	0	0	89	17	16.04	-	-	-	A	92982889	G	A	92982889	2	1	302	1	0	0	0	0	0	0	0	1	13833	1078	38	1		1	RUNX1T1	8	92982889	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	36283788	92982889	53381133	46	33845										
PKHD1L1	0	genome.wustl.edu	37	chr8	110441588	110441588	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gattaatgattccaacattaTtggagaaaaggctaatatga	8	4	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	8	110441588	110441588	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.3020	p.I1007T	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	171	0	0	236	47	16.61	-	-	-	C	110441588	T	C	110441588	3	2	302	1	0	0	0	0	1	0	0	0	12046	1493	52	5	3122	5	PKHD1L1	8	110441588	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	17458699	110441588	35922434	47	33846										
CDC37L1	0	genome.wustl.edu	37	chr9	4684908	4684908	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tggaattgaattggcttgccAaaagcagaaagagtttgtga	12	4	0	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	9	4684908	4684908	A	G	SNP	CDC37L1	ENST00000381854	human	ensembl	69_37n	1	known	missense	c.164	p.Q55R	1.000	NULL	pfam_Cdc37_Hsp90-bd	-	no_errors	CDC37L1	HGNC	ENSG00000106993	253	0	0	148	41	21.69	-	-	-	G	4684908	A	G	4684908	3	3	302	1	0	0	0	0	1	0	0	0	3098	130	5	5	170	5	CDC37L1	9	4684908	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09		4684908	136528523	48	33847										
COL15A1	0	genome.wustl.edu	37	chr9	101759318	101759318	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ctgtacccgaggggaccctgGaaaccaccaacatgagcatc	10	14	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	9	101759318	101759318	G	C	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	missense	c.907	p.E303Q	0.011	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	185	0	0	119	24	16.78	-	-	-	C	101759318	G	C	101759318	3	2	302	1	0	0	0	0	1	0	0	0	3702	1175	41	2	929	2	COL15A1	9	101759318	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	97074410	101759318	39454113	49	33848										
HSDL2	0	genome.wustl.edu	37	chr9	115221807	115221807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tggagagccttctgatcaggCagatgtggtgatgagtatga	15	5	2	6			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	9	115221807	115221807	C	T	SNP	HSDL2	ENST00000398805	human	ensembl	69_37n	1	known	missense	c.1094	p.A365V	0.954	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	437	1	0.23	318	49	13.35	-	-	-	T	115221807	C	T	115221807	3	4	302	1	0	0	0	0	1	0	0	0	7445	710	25	4	1132	4	HSDL2	9	115221807	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	13462489	115221807	25991624	50	33849										
ODF2	0	genome.wustl.edu	37	chr9	131247725	131247725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttgtaaaagaaaagggagacCttgagctggaaattattgtc	11	4	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	9	131247725	131247725	C	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.1372	p.L458I	0.998	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	181	0	0	88	24	21.43	-	-	-	A	131247725	C	A	131247725	3	1	302	1	0	0	0	0	1	0	0	0	10900	681	24	4	1473	4	ODF2	9	131247725	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	16025918	131247725	9965706	51	33850										
C10orf68	0	genome.wustl.edu	37	chr10	32977992	32977992	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tttctgtagctcctgataaaGaaccaaatgaaaatcttata	5	7	2	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	32977992	32977992	G	T	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	nonsense	c.166	p.E56*	0.001	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	109	1	0.91	158	32	16.75	-	-	-	T	32977992	G	T	32977992	4	4	302	1	0	0	0	0	0	1	0	0	1623	943	33	2	176	2	C10orf68	10	32977992	Nonsense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		32977992	102556755	52	33851										
ITGB1	0	genome.wustl.edu	37	chr10	33199265	33199265	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	atgggacacaggatcaggttGgaccggctggggtaatttgt	16	6	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	33199265	33199265	G	C	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	missense	c.2050	p.Q684E	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	137	1	0.72	89	44	33.08	-	-	-	C	33199265	G	C	33199265	3	2	302	1	0	0	0	0	1	0	0	0	7944	1357	47	4	596	4	ITGB1	10	33199265	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	221273	33199265	102335482	53	33852										
STOX1	0	genome.wustl.edu	37	chr10	70645645	70645645	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agaagaattattgagaaaagGatttgtccaggatgcagaga	12	3	0	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	70645645	70645645	G	T	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	missense	c.2093	p.G698V	0.017	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	100	0	0	73	23	23.96	-	-	-	T	70645645	G	T	70645645	3	4	302	1	0	0	0	0	1	0	0	0	15410	1174	41	2	2103	2	STOX1	10	70645645	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	37446380	70645645	64889102	54	33853										
CDH23	0	genome.wustl.edu	37	chr10	73572580	73572580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgatgatgaccgatacctgcGggctgccatccaggagtatg	13	10	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	73572580	73572580	G	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.9575	p.R3192L	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	62	0	0	67	8	10.67	-	-	-	T	73572580	G	T	73572580	3	4	302	1	0	0	0	0	1	0	0	0	3137	1116	39	3	10252	3	CDH23	10	73572580	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	2926935	73572580	61962167	55	33854										
AGAP5	0	genome.wustl.edu	37	chr10	75435825	75435825	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgttcttcgtaatgtgcacgGtggaaacctgtgtggaacag	13	7	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	75435825	75435825	G	T	SNP	AGAP5	ENST00000374094	human	ensembl	69_37n	-1	known	missense	c.593	p.T198N	0.996	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650	171	0	0	194	32	14.16	-	-	-	T	75435825	G	T	75435825	3	4	302	1	0	0	0	0	1	0	0	0	371	1261	44	4	1471	4	AGAP5	10	75435825	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	1863245	75435825	60098922	56	33855										
KIAA0913	0	genome.wustl.edu	37	chr10	75556956	75556956	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gggaaggttcctagccgcttGgcacttggcagtcgtggagg	17	9	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	75556956	75556956	G	C	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.3360	p.L1120F	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	60	0	0	87	21	19.44	-	-	-	C	75556956	G	C	75556956	3	2	302	1	0	0	0	0	1	0	0	0	8252	1339	47	4	3426	4	KIAA0913	10	75556956	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	121131	75556956	59977791	57	33856										
STAMBPL1	0	genome.wustl.edu	37	chr10	90672857	90672857	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tctggctgccacactttttaGaacaaatataaagctgaaat	6	8	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	90672857	90672857	G	T	SNP	STAMBPL1	ENST00000371927	human	ensembl	69_37n	1	known	splice_site	c.421-1	e5-1	1.000	-	-	-	no_errors	STAMBPL1	HGNC	ENSG00000138134	18	0	0	17	5	22.73	-	-	-	T	90672857	G	T	90672857	5	4	302	1	0	0	0	0	0	0	1	0	15342	956	33	2	438	2	STAMBPL1	10	90672857	Splice_Site	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	15115901	90672857	44861890	58	33857										
C10orf129	0	genome.wustl.edu	37	chr10	96967145	96967145	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gtcagataagagctatgatgGgtggttggatttcaagaagt	14	3	2	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	96967145	96967145	G	T	SNP	C10orf129	ENST00000341686	human	ensembl	69_37n	1	known	missense	c.584	p.G195V	0.921	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	C10orf129	HGNC	ENSG00000173124	78	0	0	73	34	31.78	-	-	-	T	96967145	G	T	96967145	3	4	302	1	0	0	0	0	1	0	0	0	1603	1232	43	4	594	4	C10orf129	10	96967145	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	6294288	96967145	38567602	59	33858										
ABCC2	0	genome.wustl.edu	37	chr10	101611335	101611335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tacaaatccctggaccctttTactttatggctaaggaagct	7	10	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	101611335	101611335	T	C	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.4585	p.Y1529H	0.856	pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	154	0	0	96	29	23.2	-	-	-	C	101611335	T	C	101611335	3	2	302	1	0	0	0	0	1	0	0	0	53	1754	61	5	4711	5	ABCC2	10	101611335	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	4644190	101611335	33923412	60	33859										
ELOVL3	0	genome.wustl.edu	37	chr10	103988973	103988973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttcttctgccagacctacatCaggcccaaggtcaaagccaa	7	14	4	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	103988973	103988973	C	G	SNP	ELOVL3	ENST00000370005	human	ensembl	69_37n	1	known	missense	c.777	p.I259M	0.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL3	HGNC	ENSG00000119915	180	0	0	81	37	31.36	-	-	-	G	103988973	C	G	103988973	3	3	302	1	0	0	0	0	1	0	0	0	5112	816	29	2	791	2	ELOVL3	10	103988973	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	2377638	103988973	31545774	61	33860										
COL17A1	0	genome.wustl.edu	37	chr10	105798207	105798207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgctgaatctcctggccagaGctgctgatagagcccggagg	14	11	1	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	10	105798207	105798207	G	T	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.3027	p.S1009R	0.997	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	11	0	0	9	6	40	-	-	-	T	105798207	G	T	105798207	3	4	302	1	0	0	0	0	1	0	0	0	3704	962	34	4	1514	4	COL17A1	10	105798207	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	1809234	105798207	29736540	62	33861										
CSTF3	0	genome.wustl.edu	37	chr11	33106715	33106715	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ccttttcttcatcttcatctGaatcctcgttgggccttttg	6	12	5	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	11	33106715	33106715	G	A	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.2072	p.S691L	0.998	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	119	0	0	113	17	13.08	-	-	-	A	33106715	G	A	33106715	3	1	302	1	0	0	0	0	1	0	0	0	4018	1294	45	2	85	2	CSTF3	11	33106715	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		33106715	101899801	63	33862										
OR4C12	0	genome.wustl.edu	37	chr11	50003128	50003129	+	Frame_Shift_Ins	INS	-	-	T													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	taatcattatctgaagtcacINStttttttctccaaagcttcc							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	11	50003128	50003129	-	T	INS	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	frame_shift_ins	c.910_909	p.V303fs	0.980:0.987	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	101	0	0	141	19	11.88	-	-	-	T	50003129	-	T	50003128	7	5	302	1	0	1	1	0	0	0	0	0	11119	565	20	0	23	0	OR4C12	11	50003128	Frame_Shift_Ins	INS	-	TCGA-AN-A0XN-01A-21D-A10G-09	16896413	50003128	85003388	64	33863										
PIK3C2G	0	genome.wustl.edu	37	chr12	18435045	18435045	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcttggcaaacggatccaaaTcctaatgaatcacacgaaaa	6	10	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	12	18435045	18435045	T	C	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	silent	c.30	p.N10	0.043	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	148	0	0	56	16	22.22	-	-	-	C	18435045	T	C	18435045	2	2	302	1	0	0	0	0	0	0	0	1	11985	1432	50	5		5	PIK3C2G	12	18435045	Silent	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09		18435045	115416850	65	33864										
LIMA1	0	genome.wustl.edu	37	chr12	50571618	50571618	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gcttccatacttgcagccagGacacccaccttagcaatagg	8	14	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	12	50571618	50571618	G	T	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	silent	c.1512	p.V504	0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	144	0	0	126	35	21.74	-	-	-	T	50571618	G	T	50571618	2	4	302	1	0	0	0	0	0	0	0	1	8851	1161	41	2		2	LIMA1	12	50571618	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	32136573	50571618	83280277	66	33865										
IL22	0	genome.wustl.edu	37	chr12	68647221	68647221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agctcacagatttctgcaggGcggccattgcagacaattct	10	11	3	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	12	68647221	68647221	G	T	SNP	IL22	ENST00000328087	human	ensembl	69_37n	-1	known	missense	c.8	p.A3D	0.663	NULL	superfamily_4_helix_cytokine-like_core,prints_Interleukin-22,prints_Interleukin-24	-	no_errors	IL22	HGNC	ENSG00000127318	67	0	0	58	10	14.71	-	-	-	T	68647221	G	T	68647221	3	4	302	1	0	0	0	0	1	0	0	0	7726	1203	42	4	551	4	IL22	12	68647221	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	18075603	68647221	65204674	67	33866										
C12orf50	0	genome.wustl.edu	37	chr12	88380088	88380088	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcaaatatatagacaccttaCctctctgcattccagagtta	4	11	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	12	88380088	88380088	C	G	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	splice_site	c.922+1	e9+1	1.000	-	-	-	no_errors	C12orf50	HGNC	ENSG00000165805	229	0	0	211	43	16.93	-	-	-	G	88380088	C	G	88380088	5	3	302	1	0	0	0	0	0	0	1	0	1707	521	18	4	337	4	C12orf50	12	88380088	Splice_Site	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	19732867	88380088	45471807	68	33867										
USP12	0	genome.wustl.edu	37	chr13	27645275	27645275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ctattgcaatataatggcctCgattgggaccactaaaacaa	7	9	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	13	27645275	27645275	C	T	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.944	p.R315Q	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	115	0	0	73	77	51.33	-	-	-	T	27645275	C	T	27645275	3	4	302	1	0	0	0	0	1	0	0	0	17140	884	31	1	176	1	USP12	13	27645275	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		27645275	87524603	69	33868										
TEP1	0	genome.wustl.edu	37	chr14	20846384	20846384	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gtacggatagaggctccgggTgcccccaggtcctacacagg	14	13	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	20846384	20846384	T	G	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	silent	c.5520	p.A1840	0.231	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	63	0	0	32	4	10.81	-	-	-	G	20846384	T	G	20846384	2	3	302	1	0	0	0	0	0	0	0	1	15854	1683	59	5		5	TEP1	14	20846384	Silent	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09		20846384	86503156	70	33869										
PTGDR	0	genome.wustl.edu	37	chr14	52735064	52735064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcgggaagttcgtgcagtacTgccccggcacctggtgcttt	13	12	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	52735064	52735064	T	G	SNP	PTGDR	ENST00000306051	human	ensembl	69_37n	1	known	missense	c.532	p.C178G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Prostanoid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229	63	0	0	44	22	33.33	-	-	-	G	52735064	T	G	52735064	3	3	302	1	0	0	0	0	1	0	0	0	12821	1580	55	5	534	5	PTGDR	14	52735064	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	31888680	52735064	54614476	71	33870										
LGALS3	0	genome.wustl.edu	37	chr14	55605046	55605046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gccaagtgccaccggagcctAccctgccactggcccctatg	10	18	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	55605046	55605046	A	C	SNP	LGALS3	ENST00000254301	human	ensembl	69_37n	1	known	missense	c.302	p.Y101S	1.000	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS3	HGNC	ENSG00000131981	8	0	0	3	6	66.67	-	-	-	C	55605046	A	C	55605046	3	2	302	1	0	0	0	0	1	0	0	0	8797	391	14	5	308	5	LGALS3	14	55605046	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	2869982	55605046	51744494	72	33871										
FBXO34	0	genome.wustl.edu	37	chr14	55819095	55819095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aggcattgccctatgggccaGggtattggatgtgctgccac	14	10	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	55819095	55819095	G	C	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.1987	p.G663R	1.000	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	79	0	0	48	37	43.53	-	-	-	C	55819095	G	C	55819095	3	2	302	1	0	0	0	0	1	0	0	0	5790	1000	35	4	1989	4	FBXO34	14	55819095	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	214049	55819095	51530445	73	33872										
C14orf166B	0	genome.wustl.edu	37	chr14	77319604	77319604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	atctctccatgaatggctttGggaatgaggtggctctggcc	13	9	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	77319604	77319604	G	A	SNP	C14orf166B	ENST00000393774	human	ensembl	69_37n	1	known	missense	c.859	p.G287R	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	C14orf166B	HGNC	ENSG00000100565	150	0	0	62	14	18.42	-	-	-	A	77319604	G	A	77319604	3	1	302	1	0	0	0	0	1	0	0	0	1769	1348	47	4	893	4	C14orf166B	14	77319604	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	21500509	77319604	30029936	74	33873										
TMEM63C	0	genome.wustl.edu	37	chr14	77723060	77723060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gaactggagggccagaaccaGtaccactgaccgggacctga	13	12	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	14	77723060	77723060	G	C	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	missense	c.2412	p.Q804H	0.876	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	69	0	0	30	4	11.76	-	-	-	C	77723060	G	C	77723060	3	2	302	1	0	0	0	0	1	0	0	0	16287	1020	36	4	2498	4	TMEM63C	14	77723060	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	403456	77723060	29626480	75	33874										
PGBD4	0	genome.wustl.edu	37	chr15	34395268	34395268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gctggagatgttttggtcaaCaaggcctcttttggatacac	11	8	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	15	34395268	34395268	C	A	SNP	PGBD4	ENST00000397766	human	ensembl	69_37n	1	known	missense	c.536	p.T179K	0.265	NULL	NULL	-	no_errors	PGBD4	HGNC	ENSG00000182405	182	1	0.54	98	34	25.76	-	-	-	A	34395268	C	A	34395268	3	1	302	1	0	0	0	0	1	0	0	0	11857	478	17	4	538	4	PGBD4	15	34395268	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		34395268	68136124	76	33875										
ATP8B4	0	genome.wustl.edu	37	chr15	50226338	50226338	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tcaaagaactgaaattctctAtccgcttgagatttgactga	7	8	2	5			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	15	50226338	50226338	A	T	SNP	ATP8B4	ENST00000284509	human	ensembl	69_37n	-1	known	missense	c.1329	p.D443E	0.006	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B4	HGNC	ENSG00000104043	147	1	0.68	101	37	26.81	-	-	-	T	50226338	A	T	50226338	3	4	302	1	0	0	0	0	1	0	0	0	1201	446	16	5	2305	5	ATP8B4	15	50226338	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	15831070	50226338	52305054	77	33876										
LRRC49	0	genome.wustl.edu	37	chr15	71211475	71211475	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ttaagtcatgttgataatctTaatgggctggattcactaac	8	6	3	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	15	71211475	71211475	T	C	SNP	LRRC49	ENST00000260382	human	ensembl	69_37n	1	known	silent	c.654	p.L218	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	319	1	0.31	194	71	26.79	-	-	-	C	71211475	T	C	71211475	2	2	302	1	0	0	0	0	0	0	0	1	9072	1741	61	5		5	LRRC49	15	71211475	Silent	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	20985137	71211475	31319917	78	33877										
ACSM2B	0	genome.wustl.edu	37	chr16	20576155	20576155	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gcaaagtccctgaacttttcGcagccaatgcatgttcaggc	9	12	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	16	20576155	20576155	G	A	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	nonsense	c.13	p.R5*	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	151	1	0.66	105	31	22.79	-	-	-	A	20576155	G	A	20576155	4	1	302	1	0	0	0	0	0	1	0	0	184	1095	38	1	1772	1	ACSM2B	16	20576155	Nonsense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		20576155	69778598	79	33878										
CLN3	0	genome.wustl.edu	37	chr16	28493806	28493806	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cccctcacttacaagtccctGgttaatgaaatactcggcaa	6	13	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	16	28493806	28493806	G	C	SNP	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	missense	c.898	p.Q300E	1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	100	0	0	41	22	34.92	-	-	-	C	28493806	G	C	28493806	3	2	302	1	0	0	0	0	1	0	0	0	3573	1357	47	4	438	4	CLN3	16	28493806	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	7917651	28493806	61860947	80	33879										
SLC38A7	0	genome.wustl.edu	37	chr16	58709846	58709846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gggggggggagcactcacctGtccccatgtagacagcgagg	17	11	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	16	58709846	58709846	G	T	SNP	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	missense	c.881	p.T294K	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	47	0	0	23	8	25.81	-	-	-	T	58709846	G	T	58709846	3	4	302	1	0	0	0	0	1	0	0	0	14698	1377	48	4	527	4	SLC38A7	16	58709846	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	30216040	58709846	31644907	81	33880										
LRRC29	0	genome.wustl.edu	37	chr16	67241593	67241593	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gctgggcttggaagcgtctgAcggcggccatgttgatgcca	16	10	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	16	67241593	67241593	A	C	SNP	LRRC29	ENST00000341546	human	ensembl	69_37n	-1	known	missense	c.587	p.V196G	0.976	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	LRRC29	HGNC	ENSG00000125122	42	0	0	16	9	36	-	-	-	C	67241593	A	C	67241593	3	2	302	1	0	0	0	0	1	0	0	0	9049	275	10	5	88	5	LRRC29	16	67241593	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	8531747	67241593	23113160	82	33881										
NFATC3	0	genome.wustl.edu	37	chr16	68156087	68156087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	aatctaaatatagcccattaGgtggtcccaaaccctttgag	7	10	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	16	68156087	68156087	G	C	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.301	p.G101R	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	210	0	0	173	45	20.64	-	-	-	C	68156087	G	C	68156087	3	2	302	1	0	0	0	0	1	0	0	0	10436	1000	35	4	307	4	NFATC3	16	68156087	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	914494	68156087	22198666	83	33882										
C17orf97	0	genome.wustl.edu	37	chr17	262995	262995	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tttcttcctcctttcatgacAtcttaagtccttgcaaagag	5	11	3	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	17	262995	262995	A	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	missense	c.361	p.I121F	0.974	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	182	1	0.55	88	25	22.12	-	-	-	T	262995	A	T	262995	3	4	302	1	0	0	0	0	1	0	0	0	1909	217	8	5		5	C17orf97	17	262995	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09		262995	80932215	84	33883										
TP53	0	genome.wustl.edu	37	chr17	7578556	7578556	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgttgagggcaggggagtacTgtaggaagaggaaggagaca	19	3	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	17	7578556	7578556	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.376-2	e4-2	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	53	0	0	16	11	40.74	-	-	-	C	7578556	T	C	7578556	5	2	302	1	0	0	0	0	0	0	1	0	16477	1594	55	5	924	5	TP53	17	7578556	Splice_Site	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	7315561	7578556	73616654	85	33884										
DNAH2	0	genome.wustl.edu	37	chr17	7662906	7662906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ccttgtcattttgaagaatgAtctgcaaggaagtgtggcac	11	7	2	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	17	7662906	7662906	A	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.2615	p.D872G	0.969	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	153	0	0	70	29	29.29	-	-	-	G	7662906	A	G	7662906	3	3	302	1	0	0	0	0	1	0	0	0	4638	333	12	5	2673	5	DNAH2	17	7662906	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	84350	7662906	73532304	86	33885										
MYH10	0	genome.wustl.edu	37	chr17	8396156	8396156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ctggcgctggtggtccaggtCcaccgtgaggtcgtccagct	15	13	0	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	17	8396156	8396156	C	T	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.4366	p.D1456N	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	47	0	0	15	29	65.91	-	-	-	T	8396156	C	T	8396156	3	4	302	1	0	0	0	0	1	0	0	0	10102	855	30	2	1671	2	MYH10	17	8396156	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	733250	8396156	72799054	87	33886										
HELZ	0	genome.wustl.edu	37	chr17	65103686	65103686	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agatgggactgctggtgggcTtctactctgtacttgtctat	12	8	3	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	17	65103686	65103686	T	G	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.4840	p.S1614R	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	369	0	0	201	39	16.25	-	-	-	G	65103686	T	G	65103686	3	3	302	1	0	0	0	0	1	0	0	0	7100	1609	56	5	1000	5	HELZ	17	65103686	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	56707530	65103686	16091524	88	33887										
MYL12B	0	genome.wustl.edu	37	chr18	3277358	3277358	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gtgagaagttaaatggcacaGatcctgaagatgtcatcaga	11	6	2	5			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	18	3277358	3277358	G	T	SNP	MYL12B	ENST00000237500	human	ensembl	69_37n	1	known	missense	c.292	p.D98Y	1.000	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL12B	HGNC	ENSG00000118680	123	0	0	104	28	21.21	-	-	-	T	3277358	G	T	3277358	3	4	302	1	0	0	0	0	1	0	0	0	10118	942	33	2	298	2	MYL12B	18	3277358	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		3277358	74799890	89	33888										
TXNL4A	0	genome.wustl.edu	37	chr18	77733812	77733814	+	In_Frame_Del	DEL	TTG	TTG	-													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cctccatggcccagttaatcTtgttgttgttgccagtcccc							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	18	77733812	77733814	TTG	-	DEL	TXNL4A	ENST00000269601	human	ensembl	69_37n	-1	known	in_frame_del	c.302_300	p.N100in_frame_del	1.000:1.000:1.000	pfam_mRNA_splic_U5,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	pfam_mRNA_splic_U5,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	-	no_errors	TXNL4A	HGNC	ENSG00000141759	154	0	0	89	16	15.24	-	-	-	-	77733814	TTG	-	77733812	7	5	302	1	0	1	0	1	0	0	0	0	16902	1609	56	0	130	0	TXNL4A	18	77733812	In_Frame_Del	DEL	TTG	TCGA-AN-A0XN-01A-21D-A10G-09	74456454	77733812	343436	90	33889										
MCOLN1	0	genome.wustl.edu	37	chr19	7592840	7592840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ccggactgctataccttcagCgtcctggtgaggccccccgg	12	16	1	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	7592840	7592840	C	T	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	silent	c.771	p.S257	0.721	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	58	0	0	64	10	13.51	-	-	-	T	7592840	C	T	7592840	2	4	302	1	0	0	0	0	0	0	0	1	9466	767	27	1		1	MCOLN1	19	7592840	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		7592840	51536143	91	33890										
OR7D4	0	genome.wustl.edu	37	chr19	9324928	9324928	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ggccacatacaagacaatgtTattgaggagggtgttagagc	13	6	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	9324928	9324928	T	A	SNP	OR7D4	ENST00000308682	human	ensembl	69_37n	-1	known	missense	c.586	p.N196Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	67	0	0	60	26	30.23	-	-	-	A	9324928	T	A	9324928	3	1	302	1	0	0	0	0	1	0	0	0	11293	1754	61	5	356	5	OR7D4	19	9324928	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	1732088	9324928	49804055	92	33891										
COMP	0	genome.wustl.edu	37	chr19	18900027	18900027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ggtgggtggggccgctgtacCccggcgggcaagcctcgcag	19	13	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	18900027	18900027	C	T	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.470	p.G157E	0.995	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	10	0	0	10	7	41.18	-	-	-	T	18900027	C	T	18900027	3	4	302	1	0	0	0	0	1	0	0	0	3754	623	22	4	1863	4	COMP	19	18900027	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	9575099	18900027	40228956	93	33892										
ANKRD27	0	genome.wustl.edu	37	chr19	33090934	33090934	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cttgtaaaaggctcatctggTagatcatacagttttgagtt	9	6	3	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	33090934	33090934	T	C	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.2790	p.L930	0.179	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	139	0	0	87	28	24.35	-	-	-	C	33090934	T	C	33090934	2	2	302	1	0	0	0	0	0	0	0	1	655	1625	57	5		5	ANKRD27	19	33090934	Silent	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	14190907	33090934	26038049	94	33893										
HAUS5	0	genome.wustl.edu	37	chr19	36104782	36104782	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cactgtaggactgtcaagaaGatccggggaaacctactctg	11	10	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	36104782	36104782	G	C	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	missense	c.174	p.K58N	1.000	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	145	0	0	104	19	15.45	-	-	-	C	36104782	G	C	36104782	3	2	302	1	0	0	0	0	1	0	0	0	7020	933	33	2	184	2	HAUS5	19	36104782	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	3013848	36104782	23024201	95	33894										
ZFP82	0	genome.wustl.edu	37	chr19	36883688	36883688	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agatgatgagtaaggtgtgaAtgttgcctaaaggccttctt	12	5	1	4			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	36883688	36883688	A	G	SNP	ZFP82	ENST00000392161	human	ensembl	69_37n	-1	known	silent	c.1554	p.H518	0.046	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007	109	0	0	120	30	20	-	-	-	G	36883688	A	G	36883688	2	3	302	1	0	0	0	0	0	0	0	1	17749	98	4	5		5	ZFP82	19	36883688	Silent	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	778906	36883688	22245295	96	33895										
ARHGAP35	0	genome.wustl.edu	37	chr19	47422145	47422145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gggcgagtggtcaataatgaCcactttctctactggggaga	13	8	2	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	47422145	47422145	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	silent	c.213	p.D71	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	102	0	0	56	23	29.11	-	-	-	T	47422145	C	T	47422145	2	4	302	1	0	0	0	0	0	0	0	1	6846	506	18	4		4	ARHGAP35	19	47422145	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	10538457	47422145	11706838	97	33896										
USP29	0	genome.wustl.edu	37	chr19	57642432	57642432	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	acaacccaggaaacaaaaacAttttagatgcagagaacaca	6	9	0	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	57642432	57642432	A	C	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	missense	c.2389	p.I797L	0.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	90	0	0	53	21	28.38	-	-	-	C	57642432	A	C	57642432	3	2	302	1	0	0	0	0	1	0	0	0	17156	217	8	5	2391	5	USP29	19	57642432	Missense_Mutation	SNP	A	TCGA-AN-A0XN-01A-21D-A10G-09	10220287	57642432	1486551	98	33897										
ZSCAN1	0	genome.wustl.edu	37	chr19	58564986	58564986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cggccgccaccagccatcccTcaagcacaccaaaggtggta	9	17	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	19	58564986	58564986	T	C	SNP	ZSCAN1	ENST00000282326	human	ensembl	69_37n	1	known	missense	c.794	p.L265P	0.003	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	49	0	0	32	4	11.11	-	-	-	C	58564986	T	C	58564986	3	2	302	1	0	0	0	0	1	0	0	0	18319	1551	54	5	808	5	ZSCAN1	19	58564986	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	922554	58564986	563997	99	33898										
CHGB	0	genome.wustl.edu	37	chr20	5904477	5904477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ccttgaacgagaagaatttcTtcccagaatacaactatgac	6	10	1	5			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	20	5904477	5904477	T	C	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.1687	p.F563L	1.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	56	0	0	44	13	22.81	-	-	-	C	5904477	T	C	5904477	3	2	302	1	0	0	0	0	1	0	0	0	3368	1609	56	5	1701	5	CHGB	20	5904477	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09		5904477	57121043	100	33899										
SEMG2	0	genome.wustl.edu	37	chr20	43851144	43851144	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	ataaaatatcatacccgtctTcacgtacagaagaaagacaa	5	9	3	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	20	43851144	43851144	T	C	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	missense	c.871	p.S291P	0.001	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	138	0	0	138	27	16.36	-	-	-	C	43851144	T	C	43851144	3	2	302	1	0	0	0	0	1	0	0	0	14133	1783	62	5	877	5	SEMG2	20	43851144	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	37946667	43851144	19174376	101	33900										
MMP9	0	genome.wustl.edu	37	chr20	44639873	44639873	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tactctgcctgcaccaccgaCggtcgctccgacggcttgcc	10	18	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	20	44639873	44639873	C	T	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	silent	c.741	p.D247	1.000	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	21	0	0	24	7	22.58	-	-	-	T	44639873	C	T	44639873	2	4	302	1	0	0	0	0	0	0	0	1	9741	535	19	1		1	MMP9	20	44639873	Silent	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	788729	44639873	18385647	102	33901										
ZNF334	0	genome.wustl.edu	37	chr20	45130495	45130495	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	cttcacaatggagattctacCacatttattaaacacaccat	3	11	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	20	45130495	45130495	C	A	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.1483	p.G495C	0.983	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	116	0	0	152	24	13.64	-	-	-	A	45130495	C	A	45130495	3	1	302	1	0	0	0	0	1	0	0	0	17947	594	21	4	563	4	ZNF334	20	45130495	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	490622	45130495	17895025	103	33902										
KRTAP6-1	0	genome.wustl.edu	37	chr21	31986039	31986039	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	agccagagccagagccgcatCcatagccatagccacagagg	11	14	0	3			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	21	31986039	31986039	C	A	SNP	KRTAP6-1	ENST00000329122	human	ensembl	69_37n	-1	known	missense	c.185	p.G62V	0.865	NULL	NULL	-	no_errors	KRTAP6-1	HGNC	ENSG00000184724	252	1	0.4	87	32	26.89	-	-	-	A	31986039	C	A	31986039	3	1	302	1	0	0	0	0	1	0	0	0	8623	855	30	2	34	2	KRTAP6-1	21	31986039	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09		31986039	16143856	104	33903										
ADRBK2	0	genome.wustl.edu	37	chr22	26100079	26100079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	actcgtcttttccccagaatGtggaacttccagacaccttc	6	14	1	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	22	26100079	26100079	G	A	SNP	ADRBK2	ENST00000324198	human	ensembl	69_37n	1	known	missense	c.1231	p.V411M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077	137	0	0	105	17	13.93	-	-	-	A	26100079	G	A	26100079	3	1	302	1	0	0	0	0	1	0	0	0	344	1377	48	4	1289	4	ADRBK2	22	26100079	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09		26100079	25204487	105	33904										
MYH9	0	genome.wustl.edu	37	chr22	36689868	36689868	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gtgagcttgctggacttgctGtcggactggctgagaagccc	15	10	0	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	22	36689868	36689868	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	silent	c.3879	p.D1293	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	68	0	0	39	10	20.41	-	-	-	A	36689868	G	A	36689868	2	1	302	1	0	0	0	0	0	0	0	1	10114	1368	48	4		4	MYH9	22	36689868	Silent	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	10589789	36689868	14614698	106	33905										
RANGAP1	0	genome.wustl.edu	37	chr22	41652046	41652046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgagggacgccagcaccttgGccatgttgaagccctccagc	12	14	0	2			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	22	41652046	41652046	G	A	SNP	RANGAP1	ENST00000356244	human	ensembl	69_37n	-1	known	missense	c.1052	p.A351V	0.897	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401	26	0	0	25	16	39.02	-	-	-	A	41652046	G	A	41652046	3	1	302	1	0	0	0	0	1	0	0	0	13116	1203	42	4	739	4	RANGAP1	22	41652046	Missense_Mutation	SNP	G	TCGA-AN-A0XN-01A-21D-A10G-09	4962178	41652046	9652520	107	33906										
TTLL1	0	genome.wustl.edu	37	chr22	43465764	43465764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tccgggtcagttcatagtggTttggaaaatggttgactatt	12	5	2	1			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	22	43465764	43465764	T	C	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	missense	c.200	p.N67S	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	329	1	0.3	200	44	18.03	-	-	-	C	43465764	T	C	43465764	3	2	302	1	0	0	0	0	1	0	0	0	16819	1725	60	5	1103	5	TTLL1	22	43465764	Missense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	1813718	43465764	7838802	108	33907										
USP9X	0	genome.wustl.edu	37	chrX	41048632	41048633	+	Frame_Shift_Ins	INS	-	-	A													0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gcattggaagtgatgaccttINSatgttttgccttgattccaa							TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	X	41048632	41048633	-	A	INS	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	frame_shift_ins	c.3881_3882	p.C1295fs	0.736:0.310	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	358	0	0	116	101	46.54	-	-	-	A	41048633	-	A	41048632	7	5	302	1	0	1	1	0	0	0	0	0	17187	1764	61	0	3979	0	USP9X	23	41048632	Frame_Shift_Ins	INS	-	TCGA-AN-A0XN-01A-21D-A10G-09		41048632	114221928	109	33908										
FAM155B	0	genome.wustl.edu	37	chrX	68725887	68725887	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gaggcgtaccagcggctggaCcgacacgctcaggaaaaata	13	11	1	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	X	68725887	68725887	C	A	SNP	FAM155B	ENST00000252338	human	ensembl	69_37n	1	known	missense	c.762	p.D254E	1.000	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054	52	0	0	24	14	36.84	-	-	-	A	68725887	C	A	68725887	3	1	302	1	0	0	0	0	1	0	0	0	5506	506	18	4	764	4	FAM155B	23	68725887	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	27677255	68725887	86544673	110	33909										
TAF1	0	genome.wustl.edu	37	chrX	70607214	70607214	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	gggttactatattcgggaatTagtggatatttttgtggttg	13	2	0	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	X	70607214	70607214	T	G	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	nonsense	c.2327	p.L776*	0.979	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	462	0	0	213	67	23.93	-	-	-	G	70607214	T	G	70607214	4	3	302	1	0	0	0	0	0	1	0	0	15605	1764	61	5	2448	5	TAF1	23	70607214	Nonsense_Mutation	SNP	T	TCGA-AN-A0XN-01A-21D-A10G-09	1881327	70607214	84663346	111	33910										
COL4A5	0	genome.wustl.edu	37	chrX	107924995	107924995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	0.843743695016429	1.04499174463401	1.90752461322082	0.490506329113924	0.34984520123839	0.950412796697626	0	tgttttgtctcataggtcctCctggattacctggtccttca	8	11	2	0			TCGA-AN-A0XN-01A-21D-A10G-09	TCGA-AN-A0XN-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94a6c172-25e2-4438-945c-9b310f89ae22	b840005e-ca83-4444-ad1d-e3e263ae4fed	X	107924995	107924995	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.4093	p.P1365S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	344	0	0	176	52	22.81	-	-	-	T	107924995	C	T	107924995	3	4	302	1	0	0	0	0	1	0	0	0	3724	855	30	2	4264	2	COL4A5	23	107924995	Missense_Mutation	SNP	C	TCGA-AN-A0XN-01A-21D-A10G-09	37317781	107924995	47345565	112	33911										
VPS72	0	genome.wustl.edu	37	chr1	151162528	151162528	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gtagaactcatcttcctcctCtgcctccaaaagcccagaaa	5	15	3	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	151162528	151162528	C	T	SNP	VPS72	ENST00000368892	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	1.000	pfam_YL1	pfam_YL1,pfam_YL1_C	-	no_errors	VPS72	HGNC	ENSG00000163159	39	0	0	131	47	26.4	-	-	-	T	151162528	C	T	151162528	3	4	303	1	0	0	0	0	1	0	0	0	17314	922	32	2	1048	2	VPS72	1	151162528	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		151162528	98088093	1	33912										
PBXIP1	0	genome.wustl.edu	37	chr1	154918213	154918213	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ggtcatgacggaagatgccaTcctcaccaaagaaagcaggt	11	10	2	3			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	154918213	154918213	T	A	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	missense	c.1937	p.D646V	1.000	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	48	0	0	37	35	48.61	-	-	-	A	154918213	T	A	154918213	3	1	303	1	0	0	0	0	1	0	0	0	11569	1435	50	5	266	5	PBXIP1	1	154918213	Missense_Mutation	SNP	T	TCGA-AN-A0XO-01A-11D-A10G-09	3755685	154918213	94332408	2	33913										
OR2T5	0	genome.wustl.edu	37	chr1	248652175	248652175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	aggtcatgggtgtgaataagGtctcagcccctgagtgtggg	16	7	2	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	248652175	248652175	G	A	SNP	OR2T5	ENST00000366473	human	ensembl	69_37n	1	known	missense	c.286	p.V96I	0.406	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T5	HGNC	ENSG00000203661	17	0	0	51	14	21.54	-	-	-	A	248652175	G	A	248652175	3	1	303	1	0	0	0	0	1	0	0	0	11101	1261	44	4	288	4	OR2T5	1	248652175	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	93733962	248652175	598446	3	33914										
TTC27	0	genome.wustl.edu	37	chr2	32889484	32889484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	tgagtacagaaaagcaaaagAtcagttggatattgctaagg	11	4	1	3			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	32889484	32889484	A	G	SNP	TTC27	ENST00000317907	human	ensembl	69_37n	1	known	missense	c.755	p.D252G	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699	9	0	0	165	52	23.96	-	-	-	G	32889484	A	G	32889484	3	3	303	1	0	0	0	0	1	0	0	0	16792	333	12	5	777	5	TTC27	2	32889484	Missense_Mutation	SNP	A	TCGA-AN-A0XO-01A-11D-A10G-09		32889484	210309889	4	33915										
SNRNP200	0	genome.wustl.edu	37	chr2	96964156	96964156	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ggccagcaaggtacagtataAaactacccacaacaaaagga	8	10	0	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	96964156	96964156	A	G	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.985	p.L329	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	42	0	0	155	76	32.9	-	-	-	G	96964156	A	G	96964156	2	3	303	1	0	0	0	0	0	0	0	1	14941	11	1	5		5	SNRNP200	2	96964156	Silent	SNP	A	TCGA-AN-A0XO-01A-11D-A10G-09	64074672	96964156	146235217	5	33916										
IL1R2	0	genome.wustl.edu	37	chr2	102625086	102625089	+	Frame_Shift_Del	DEL	CAGC	CAGC	-													0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gagtttctgccttcacccttCagcctgcggcacacacaggt							TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	CAGC	CAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	102625086	102625089	CAGC	-	DEL	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	frame_shift_del	c.49_52	p.Q17fs	0.012:0.005:0.008:0.006	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	54	0	0	87	37	29.84	-	-	-	-	102625089	CAGC	-	102625086	7	5	303	1	0	1	0	1	0	0	0	0	7713	827	29	0	51	0	IL1R2	2	102625086	Frame_Shift_Del	DEL	CAGC	TCGA-AN-A0XO-01A-11D-A10G-09	5660930	102625086	140574287	6	33917	276	2								
IL1R2	0	genome.wustl.edu	37	chr2	102625095	102625095	+	Missense_Mutation	SNP	G	G	A													0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ccttcacccttcagcctgcgGcacacacaggttagaagtaa							TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	102625095	102625095	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	69_37n	1	known	missense	c.58	p.A20T	0.082	pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Interleukin-1_rcpt_II,prints_IL1_rcpt_I/II	-	no_errors	IL1R2	HGNC	ENSG00000115590	53	0	0	71	41	36.61	-	-	-	A	102625095	G	A	102625095	3	1	303	1	0	0	0	0	1	0	0	0	7713	1203	42	4	60	4	IL1R2	2	102625095	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	9	102625095	140574278	7	33918	276	2								
ANKMY1	0	genome.wustl.edu	37	chr2	241468736	241468736	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	actccgttttctcctcttctGagaggctgatcctggcaggg	11	12	3	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	241468736	241468736	G	A	SNP	ANKMY1	ENST00000272972	human	ensembl	69_37n	-1	known	missense	c.404	p.S135L	0.002	NULL	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504	105	0	0	78	29	27.1	-	-	-	A	241468736	G	A	241468736	3	1	303	1	0	0	0	0	1	0	0	0	634	1294	45	2	2477	2	ANKMY1	2	241468736	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	138843641	241468736	1730637	8	33919										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	11	0	0	110	143	56.52	-	-	-	A	178928079	G	A	178928079	3	1	303	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09		178928079	19094351	9	33920										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	8	0	0	94	83	46.89	-	-	-	A	178936082	G	A	178936082	3	1	303	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	8003	178936082	19086348	10	33921										
PCDH10	0	genome.wustl.edu	37	chr4	134071406	134071406	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ggcactttcgtggggaatatCgctgaagatctgggtctgga	15	7	2	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	4	134071406	134071406	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.111	p.I37	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	31	0	0	52	10	16.13	-	-	-	T	134071406	C	T	134071406	2	4	303	1	0	0	0	0	0	0	0	1	11580	874	31	1		1	PCDH10	4	134071406	Silent	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		134071406	57082870	11	33922										
CDCA2	0	genome.wustl.edu	37	chr8	25325771	25325771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gcgcttgccagcagtctgggTtccctgcagtgttgtcctcc	12	14	1	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	8	25325771	25325771	T	C	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.577	p.F193L	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	20	0	0	57	24	29.63	-	-	-	C	25325771	T	C	25325771	3	2	303	1	0	0	0	0	1	0	0	0	3115	1725	60	5	595	5	CDCA2	8	25325771	Missense_Mutation	SNP	T	TCGA-AN-A0XO-01A-11D-A10G-09		25325771	121038251	12	33923										
PHF19	0	genome.wustl.edu	37	chr9	123629214	123629214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	cgtggaaccactgcctgcacCggtaacattgcagcatccgc	10	15	0	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	9	123629214	123629214	C	G	SNP	PHF19	ENST00000373896	human	ensembl	69_37n	-1	known	missense	c.644	p.R215P	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	44	0	0	10	10	50	-	-	-	G	123629214	C	G	123629214	3	3	303	1	0	0	0	0	1	0	0	0	11903	652	23	3	1134	3	PHF19	9	123629214	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		123629214	17584217	13	33924										
OR1Q1	0	genome.wustl.edu	37	chr9	125377610	125377610	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	acctacctcaacacccttatGattcacacagaaggtgctgt	6	13	2	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	9	125377610	125377610	G	A	SNP	OR1Q1	ENST00000297913	human	ensembl	69_37n	1	known	missense	c.594	p.M198I	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202	92	0	0	86	11	11.34	-	-	-	A	125377610	G	A	125377610	3	1	303	1	0	0	0	0	1	0	0	0	11044	1290	45	2	596	2	OR1Q1	9	125377610	Missense_Mutation	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	1748396	125377610	15835821	14	33925										
BAG3	0	genome.wustl.edu	37	chr10	121429471	121429471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gaccaggctacattcccattCctgtgctccatgaaggcgct	9	14	0	1			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	10	121429471	121429471	C	T	SNP	BAG3	ENST00000369085	human	ensembl	69_37n	1	known	missense	c.289	p.P97S	1.000	NULL	pfam_BAG_domain,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_Rsp5_WWP	-	no_errors	BAG3	HGNC	ENSG00000151929	66	0	0	30	14	31.82	-	-	-	T	121429471	C	T	121429471	3	4	303	1	0	0	0	0	1	0	0	0	1292	855	30	2	295	2	BAG3	10	121429471	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		121429471	14105276	15	33926										
LRRK2	0	genome.wustl.edu	37	chr12	40714892	40714892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ttgtgagaactctgaaattaTcatccgactatatgaaatgc	7	7	2	3			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	40714892	40714892	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.5072	p.I1691T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	14	0	0	161	100	38.31	-	-	-	C	40714892	T	C	40714892	3	2	303	1	0	0	0	0	1	0	0	0	9099	1435	50	5	5210	5	LRRK2	12	40714892	Missense_Mutation	SNP	T	TCGA-AN-A0XO-01A-11D-A10G-09		40714892	93137003	16	33927										
GALNT6	0	genome.wustl.edu	37	chr12	51771043	51771043	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	atggcaggggtggtgtgtagGacgctgtacactgttcgcag	17	7	0	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	51771043	51771043	G	A	SNP	GALNT6	ENST00000356317	human	ensembl	69_37n	-1	known	silent	c.600	p.V200	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629	121	0	0	68	29	29.9	-	-	-	A	51771043	G	A	51771043	2	1	303	1	0	0	0	0	0	0	0	1	6267	1161	41	2		2	GALNT6	12	51771043	Silent	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	11056151	51771043	82080852	17	33928										
KRT18	0	genome.wustl.edu	37	chr12	53344651	53344651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gagacagagatcgaggctctCaaggaggagctgctcttcat	13	9	3	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	53344651	53344651	C	T	SNP	KRT18	ENST00000388835	human	ensembl	69_37n	1	known	silent	c.618	p.L206	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	15	0	0	10	7	41.18	-	-	-	T	53344651	C	T	53344651	2	4	303	1	0	0	0	0	0	0	0	1	8508	813	29	2		2	KRT18	12	53344651	Silent	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09	1573608	53344651	80507244	18	33929										
NAV3	0	genome.wustl.edu	37	chr12	78444719	78444719	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	atcctcgcagtggtaccagtCgattcatccacacagacccc	7	16	1	1			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	78444719	78444719	C	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	nonsense	c.2308	p.R770*	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	49	0	0	48	31	39.24	-	-	-	T	78444719	C	T	78444719	4	4	303	1	0	0	0	0	0	1	0	0	10257	876	31	1	2350	1	NAV3	12	78444719	Nonsense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09	25100068	78444719	55407176	19	33930										
ZMYM2	0	genome.wustl.edu	37	chr13	20641448	20641448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gcttaactatgggttagctcAttttgtcaatgagatccgac	9	8	2	1			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	20641448	20641448	A	G	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.3371	p.H1124R	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	11	0	0	90	48	34.78	-	-	-	G	20641448	A	G	20641448	3	3	303	1	0	0	0	0	1	0	0	0	17796	217	8	5	3445	5	ZMYM2	13	20641448	Missense_Mutation	SNP	A	TCGA-AN-A0XO-01A-11D-A10G-09		20641448	94528430	20	33931										
FAM124A	0	genome.wustl.edu	37	chr13	51855020	51855020	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	ggcctgcggctgtcctcatcGgacctgtctgtggtctctgc	13	14	3	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	51855020	51855020	G	C	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	silent	c.1377	p.S459	0.748	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	19	0	0	22	17	43.59	-	-	-	C	51855020	G	C	51855020	2	2	303	1	0	0	0	0	0	0	0	1	5465	1103	39	3		3	FAM124A	13	51855020	Silent	SNP	G	TCGA-AN-A0XO-01A-11D-A10G-09	31213572	51855020	63314858	21	33932										
TBC1D4	0	genome.wustl.edu	37	chr13	76055696	76055696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	cgccccgcagccgcccgcctCgggcttctggctgcgcctgc	13	21	1	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	76055696	76055696	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.208	p.E70K	0.998	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	15	0	0	2	9	81.82	-	-	-	T	76055696	C	T	76055696	3	4	303	1	0	0	0	0	1	0	0	0	15717	893	31	1	3772	1	TBC1D4	13	76055696	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09	24200676	76055696	39114182	22	33933										
PACS2	0	genome.wustl.edu	37	chr14	105856299	105856299	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	tctgtttccttgctcttagcCctgacgaagagtcctcccaa	7	14	2	2			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	14	105856299	105856299	C	G	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	missense	c.2035	p.P679A	1.000	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	39	0	0	127	38	23.03	-	-	-	G	105856299	C	G	105856299	3	3	303	1	0	0	0	0	1	0	0	0	11446	637	22	4	2076	4	PACS2	14	105856299	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		105856299	1493241	23	33934										
GRIPAP1	0	genome.wustl.edu	37	chrX	48837669	48837669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.260869565217391	6	0.0844303671673649	2.63602941176471	0	3.24434389140271	0.00216450216450216	0.0441017316017315	0	gaggatgtcctgcagtcgctCctgcagcttatctgcccgtt	11	13	1	0			TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	X	48837669	48837669	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.1888	p.E630K	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	136	0	0	75	31	29.25	-	-	-	T	48837669	C	T	48837669	3	4	303	1	0	0	0	0	1	0	0	0	6840	864	30	2	715	2	GRIPAP1	23	48837669	Missense_Mutation	SNP	C	TCGA-AN-A0XO-01A-11D-A10G-09		48837669	106432891	24	33935										
CD2	0	genome.wustl.edu	37	chr1	117311091	117311091	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	gttttgttgttgcagatgagGagctggagacaagagcccac	14	7	0	4			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	1	117311091	117311091	G	T	SNP	CD2	ENST00000369478	human	ensembl	69_37n	1	known	nonsense	c.742	p.E248*	0.823	NULL	pfam_Ig_C2-set,pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	-	no_errors	CD2	HGNC	ENSG00000116824	42	0	0	47	6	11.32	-	-	-	T	117311091	G	T	117311091	4	4	304	1	0	0	0	0	0	1	0	0	3008	1175	41	2	760	2	CD2	1	117311091	Nonsense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09		117311091	131939530	1	33936										
CHD1L	0	genome.wustl.edu	37	chr1	146724328	146724328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	gagtaaactggctcgcccagCgcttccattgtcagaatggc	11	12	1	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	1	146724328	146724328	C	T	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.178	p.R60C	0.777	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	181	0	0	248	70	22.01	-	-	-	T	146724328	C	T	146724328	3	4	304	1	0	0	0	0	1	0	0	0	3353	768	27	1	184	1	CHD1L	1	146724328	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09	29413237	146724328	102526293	2	33937										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858866	149858866	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	gttttgcctaacatccaggcCgttctgttaccaaagaaaac	7	11	1	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	1	149858866	149858866	C	G	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	silent	c.342	p.A114	0.990	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	65	0	0	104	24	18.6	-	-	-	G	149858866	C	G	149858866	2	3	304	1	0	0	0	0	0	0	0	1	7229	639	23	3		3	HIST2H2AC	1	149858866	Silent	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09	3134538	149858866	99391755	3	33938										
CD34	0	genome.wustl.edu	37	chr1	208063100	208063101	+	Frame_Shift_Ins	INS	-	-	AA													0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tgtttctaaaattccaacagINSaaaaaaaaaaaactgctaac							TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	1	208063100	208063101	-	AA	INS	CD34	ENST00000367036	human	ensembl	69_37n	-1	known	frame_shift_ins	c.83_82	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	15	0	0	12	3	20	-	-	-	AA	208063101	-	AA	208063100	7	5	304	1	0	1	1	0	0	0	0	0	3035	957	33	0		0	CD34	1	208063100	Frame_Shift_Ins	INS	-	TCGA-AN-A0XP-01A-11D-A117-09	58204234	208063100	41187521	4	33939										
LBR	0	genome.wustl.edu	37	chr1	225592382	225592382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tgcatttttctgagaatttgCacctcggaagattacataac	7	8	1	2			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	1	225592382	225592382	C	T	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.1510	p.A504T	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	199	0	0	205	48	18.97	-	-	-	T	225592382	C	T	225592382	3	4	304	1	0	0	0	0	1	0	0	0	8706	710	25	4	349	4	LBR	1	225592382	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09	17529282	225592382	23658239	5	33940										
SLC1A4	0	genome.wustl.edu	37	chr2	65243809	65243809	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	catttgctacctgctccaggTgagtgggttttgggtctctt	12	9	1	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	2	65243809	65243809	T	C	SNP	SLC1A4	ENST00000234256	human	ensembl	69_37n	1	known	splice_site	c.1034+2	e5+2	1.000	-	-	-	no_errors	SLC1A4	HGNC	ENSG00000115902	113	0	0	58	41	41.41	-	-	-	C	65243809	T	C	65243809	5	2	304	1	0	0	0	0	0	0	1	0	14523	1710	59	5	1054	5	SLC1A4	2	65243809	Splice_Site	SNP	T	TCGA-AN-A0XP-01A-11D-A117-09		65243809	177955564	6	33941										
SNRNP200	0	genome.wustl.edu	37	chr2	96956114	96956114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ttctgcattgagcatgtcagGaagctttgaaaccatctggc	10	9	3	2			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	2	96956114	96956114	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.2692	p.P898S	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	90	0	0	65	27	29.35	-	-	-	A	96956114	G	A	96956114	3	1	304	1	0	0	0	0	1	0	0	0	14941	1174	41	2	3822	2	SNRNP200	2	96956114	Missense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09	31712305	96956114	146243259	7	33942										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	136	0	0	67	56	45.53	-	-	-	A	178936091	G	A	178936091	3	1	304	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09		178936091	19086339	8	33943										
FAT1	0	genome.wustl.edu	37	chr4	187524066	187524066	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tcaactctcacctgggcactGaccaaacctgccgctgggac	9	16	2	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	4	187524066	187524066	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	nonsense	c.11473	p.Q3825*	0.685	smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	45	0	0	16	18	52.94	-	-	-	A	187524066	G	A	187524066	4	1	304	1	0	0	0	0	0	1	0	0	5735	1299	45	2	2325	2	FAT1	4	187524066	Nonsense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09		187524066	3630210	9	33944										
KIAA0947	0	genome.wustl.edu	37	chr5	5457514	5457514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tacgctacctccaacacaggGcagccctctcaggacctcaa	7	17	2	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	5	5457514	5457514	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.761	p.G254D	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	84	0	0	71	37	34.26	-	-	-	A	5457514	G	A	5457514	3	1	304	1	0	0	0	0	1	0	0	0	8254	1203	42	4	807	4	KIAA0947	5	5457514	Missense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09		5457514	175457746	10	33945										
HSD17B4	0	genome.wustl.edu	37	chr5	118860980	118860980	+	Frame_Shift_Del	DEL	G	G	-													0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ctaactttgctagtctagcaGgtgagttgtctttaatatgt							TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	5	118860980	118860980	G	-	DEL	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	frame_shift_del	c.1573	p.G525fs	1.000	pfam_MaoC_deHydtase	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	202	0	0	157	65	28.89	-	-	-	-	118860980	G	-	118860980	7	5	304	1	0	1	0	1	0	0	0	0	7437	1014	35	0	1643	0	HSD17B4	5	118860980	Frame_Shift_Del	DEL	G	TCGA-AN-A0XP-01A-11D-A117-09	113403466	118860980	62054280	11	33946										
NCR2	0	genome.wustl.edu	37	chr6	41304105	41304105	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ggacattactggtgtagaatCtaccgcccttctgacaactc	8	12	2	2			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	6	41304105	41304105	C	A	SNP	NCR2	ENST00000373089	human	ensembl	69_37n	1	known	silent	c.333	p.I111	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NCR2	HGNC	ENSG00000096264	60	0	0	50	29	36.71	-	-	-	A	41304105	C	A	41304105	2	1	304	1	0	0	0	0	0	0	0	1	10310	903	32	2		2	NCR2	6	41304105	Silent	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		41304105	129810962	12	33947										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74234113	74234113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ccatgggttcagttttcacaTtgatggggccgcagctgcaa	12	10	2	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	7	74234113	74234113	T	C	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	missense	c.641	p.N214S	0.131	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	22	0	0	12	9	42.86	-	-	-	C	74234113	T	C	74234113	3	2	304	1	0	0	0	0	1	0	0	0	6920	1493	52	5	2244	5	GTF2IRD2	7	74234113	Missense_Mutation	SNP	T	TCGA-AN-A0XP-01A-11D-A117-09		74234113	84904550	13	33948										
MLL3	0	genome.wustl.edu	37	chr7	151845282	151845283	+	Frame_Shift_Del	DEL	GG	GG	-													0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ggctggcttcatagcccacaGggaagagtgctttaggagaa							TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	7	151845282	151845283	GG	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.13901_13900	p.P4634fs	1.000:1.000	pfam_FYrich_N,smart_FYrich_N	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	51	0	0	58	27	31.4	-	-	-	-	151845283	GG	-	151845282	7	5	304	1	0	1	0	1	0	0	0	0	9693	1000	35	0	1037	0	MLL3	7	151845282	Frame_Shift_Del	DEL	GG	TCGA-AN-A0XP-01A-11D-A117-09	77611169	151845282	7293381	14	33949										
TACC1	0	genome.wustl.edu	37	chr8	38684873	38684873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tgtgtctaccataaatcatgCgttttcatcctcagaagcag	7	10	4	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	8	38684873	38684873	C	T	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	missense	c.1676	p.A559V	0.998	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	140	0	0	116	63	35.2	-	-	-	T	38684873	C	T	38684873	3	4	304	1	0	0	0	0	1	0	0	0	15593	768	27	1	1658	1	TACC1	8	38684873	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		38684873	107679149	15	33950										
SHARPIN	0	genome.wustl.edu	37	chr8	145154196	145154196	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tgacctggggcttctcgaggAgctgacagcaagtagaggaa	15	8	1	3			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	8	145154196	145154196	A	C	SNP	SHARPIN	ENST00000398712	human	ensembl	69_37n	-1	known	silent	c.906	p.A302	0.896	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	27	0	0	35	13	27.08	-	-	-	C	145154196	A	C	145154196	2	2	304	1	0	0	0	0	0	0	0	1	14356	291	11	5		5	SHARPIN	8	145154196	Silent	SNP	A	TCGA-AN-A0XP-01A-11D-A117-09	106469323	145154196	1209826	16	33951										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714311	138714311	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tcagaatcctgcctgaggagAgtccacggctctgaatcgtg	12	11	2	4			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	9	138714311	138714311	A	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.2229	p.T743	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	81	0	0	69	31	31	-	-	-	T	138714311	A	T	138714311	2	4	304	1	0	0	0	0	0	0	0	1	2636	291	11	5		5	CAMSAP1	9	138714311	Silent	SNP	A	TCGA-AN-A0XP-01A-11D-A117-09		138714311	2499120	17	33952										
CAPN1	0	genome.wustl.edu	37	chr11	64953422	64953422	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ggagtgggtggacgtggtcgTggatgacctgctgcccatca	17	9	1	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	11	64953422	64953422	T	C	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.491	p.V164A	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	87	0	0	78	34	30.36	-	-	-	C	64953422	T	C	64953422	3	2	304	1	0	0	0	0	1	0	0	0	2647	1696	59	5	505	5	CAPN1	11	64953422	Missense_Mutation	SNP	T	TCGA-AN-A0XP-01A-11D-A117-09		64953422	70053094	18	33953										
SCN8A	0	genome.wustl.edu	37	chr12	52115519	52115519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tcatccccatccgggcccgcGagcgccggagcagctacagc	12	18	1	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	12	52115519	52115519	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.1825	p.E609K	0.999	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	14	0	0	11	6	35.29	-	-	-	A	52115519	G	A	52115519	3	1	304	1	0	0	0	0	1	0	0	0	14012	1059	37	1	1867	1	SCN8A	12	52115519	Missense_Mutation	SNP	G	TCGA-AN-A0XP-01A-11D-A117-09		52115519	81736376	19	33954										
APPL2	0	genome.wustl.edu	37	chr12	105570747	105570747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	atgacaaaaccaaccagtctCttgttttcttgatgagcagc	7	10	2	3			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	12	105570747	105570747	C	G	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	missense	c.1737	p.K579N	1.000	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	192	0	0	91	72	44.17	-	-	-	G	105570747	C	G	105570747	3	3	304	1	0	0	0	0	1	0	0	0	820	912	32	2	287	2	APPL2	12	105570747	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09	53455228	105570747	28281148	20	33955										
CSNK1A1L	0	genome.wustl.edu	37	chr13	37678520	37678520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	ccaatcaaatgtgtagtcatAttggtggttcagggtcctga	11	7	3	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	13	37678520	37678520	A	G	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	missense	c.874	p.Y292H	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	260	0	0	239	96	28.57	-	-	-	G	37678520	A	G	37678520	3	3	304	1	0	0	0	0	1	0	0	0	3983	449	16	5	143	5	CSNK1A1L	13	37678520	Missense_Mutation	SNP	A	TCGA-AN-A0XP-01A-11D-A117-09		37678520	77491358	21	33956										
OR4K14	0	genome.wustl.edu	37	chr14	20482985	20482985	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	gtttgcatatggccacatatCtgtcataggccatggaaacc	9	10	2	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	14	20482985	20482985	C	G	SNP	OR4K14	ENST00000305045	human	ensembl	69_37n	-1	known	missense	c.368	p.R123T	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K14	HGNC	ENSG00000169484	105	0	0	84	35	29.41	-	-	-	G	20482985	C	G	20482985	3	3	304	1	0	0	0	0	1	0	0	0	11142	913	32	2	567	2	OR4K14	14	20482985	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		20482985	86866555	22	33957										
RTN4RL1	0	genome.wustl.edu	37	chr17	1839853	1839853	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	gaggcccccagggaactggcCgaggaggcctgctgcacccc	15	16	0	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	17	1839853	1839853	C	T	SNP	RTN4RL1	ENST00000331238	human	ensembl	69_37n	-1	known	silent	c.1263	p.S421	0.858	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924	14	0	0	6	12	66.67	-	-	-	T	1839853	C	T	1839853	2	4	304	1	0	0	0	0	0	0	0	1	13817	639	23	1		1	RTN4RL1	17	1839853	Silent	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		1839853	79355357	23	33958										
CYP24A1	0	genome.wustl.edu	37	chr20	52789446	52789446	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	aggtccctcggattggactcAcaggatcagcagcccgtagc	12	13	2	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	20	52789446	52789446	A	T	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	splice_site	c.449+2	e2+2	1.000	-	-	-	no_errors	CYP24A1	HGNC	ENSG00000019186	60	0	0	81	24	22.86	-	-	-	T	52789446	A	T	52789446	5	4	304	1	0	0	0	0	0	0	1	0	4185	173	6	5	1133	5	CYP24A1	20	52789446	Splice_Site	SNP	A	TCGA-AN-A0XP-01A-11D-A117-09		52789446	10236074	24	33959										
SH3BP1	0	genome.wustl.edu	37	chr22	38037425	38037425	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	aagcgggcagcccacaacatCcacaagcggctgcaggcctg	12	15	0	0			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	22	38037425	38037425	C	G	SNP	SH3BP1	ENST00000357436	human	ensembl	69_37n	1	known	missense	c.147	p.I49M	0.940	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	25	0	0	19	11	36.67	-	-	-	G	38037425	C	G	38037425	3	3	304	1	0	0	0	0	1	0	0	0	14332	845	30	2	157	2	SH3BP1	22	38037425	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		38037425	13267141	25	33960										
CCDC120	0	genome.wustl.edu	37	chrX	48924824	48924824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.368224788648308	2.00793650793651	3.51388888888889	1.40555555555556	1	1	0	tcttcgtagctcgcacccgcCgcagcaacagttctgaggcc	10	16	2	1			TCGA-AN-A0XP-01A-11D-A117-09	TCGA-AN-A0XP-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6179b498-2cea-4f7a-82a8-b7ec71431ea8	6c4eee86-8839-4a74-a786-b37e7dd35b21	X	48924824	48924824	C	T	SNP	CCDC120	ENST00000422185	human	ensembl	69_37n	1	known	missense	c.1069	p.R357C	1.000	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	8	0	0	9	5	35.71	-	-	-	T	48924824	C	T	48924824	3	4	304	1	0	0	0	0	1	0	0	0	2781	652	23	1	1099	1	CCDC120	23	48924824	Missense_Mutation	SNP	C	TCGA-AN-A0XP-01A-11D-A117-09		48924824	106345736	26	33961										
CHD5	0	genome.wustl.edu	37	chr1	6206325	6206325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	tctggcttgatgccatagcgGtagaagcgctcctccatctt	10	12	2	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	1	6206325	6206325	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	silent	c.1749	p.Y583	1.000	superfamily_Chromodomain-like	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	103	0	0	128	90	41.28	-	-	-	A	6206325	G	A	6206325	2	1	305	1	0	0	0	0	0	0	0	1	3357	1256	44	4		4	CHD5	1	6206325	Silent	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		6206325	243044296	1	33962										
KIF17	0	genome.wustl.edu	37	chr1	21014005	21014005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	ggcctagtaacccctgcaggGgcacctcctgcggctcctct	11	17	1	0			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	1	21014005	21014005	G	A	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.1814	p.P605L	0.001	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	19	0	0	22	8	26.67	-	-	-	A	21014005	G	A	21014005	3	1	305	1	0	0	0	0	1	0	0	0	8331	1232	43	4	1307	4	KIF17	1	21014005	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	14807680	21014005	228236616	2	33963										
ASB17	0	genome.wustl.edu	37	chr1	76397891	76397891	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	ccaaaaactgtagggagggtCttttaacaattttgtcaagg	10	6	2	0			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	1	76397891	76397891	C	T	SNP	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	missense	c.86	p.R29K	1.000	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	97	0	0	118	75	38.86	-	-	-	T	76397891	C	T	76397891	3	4	305	1	0	0	0	0	1	0	0	0	1025	913	32	2	813	2	ASB17	1	76397891	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	55383886	76397891	172852730	3	33964										
GNAT2	0	genome.wustl.edu	37	chr1	110151266	110151266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gtcttactaagatgcggagtCattaagctggtattctgcag	11	7	3	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	1	110151266	110151266	C	T	SNP	GNAT2	ENST00000351050	human	ensembl	69_37n	-1	known	missense	c.448	p.D150N	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT2	HGNC	ENSG00000134183	155	0	0	184	130	41.4	-	-	-	T	110151266	C	T	110151266	3	4	305	1	0	0	0	0	1	0	0	0	6564	826	29	2	636	2	GNAT2	1	110151266	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	33753375	110151266	139099355	4	33965										
PLD5	0	genome.wustl.edu	37	chr1	242253346	242253346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	ttctgttgttcctcacatctGcctggttgataacaaggccc	8	12	3	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	1	242253346	242253346	G	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.1421	p.A474E	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	209	0	0	462	205	30.73	-	-	-	T	242253346	G	T	242253346	3	4	305	1	0	0	0	0	1	0	0	0	12123	1319	46	4	193	4	PLD5	1	242253346	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	132102080	242253346	6997275	5	33966										
COL6A5	0	genome.wustl.edu	37	chr3	130134498	130134498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	taccactaaaggggtcacagGgaaatcctggcagaaaagga	12	8	1	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	3	130134498	130134498	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.4771	p.G1591R	0.842	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	49	0	0	91	84	48	-	-	-	A	130134498	G	A	130134498	3	1	305	1	0	0	0	0	1	0	0	0	3732	1233	43	4	4857	4	COL6A5	3	130134498	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		130134498	67887932	6	33967										
CDH9	0	genome.wustl.edu	37	chr5	26881437	26881437	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	tcatatggaggtgcacttggGtctgcgtcgttttcttttaa	11	7	3	0			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	5	26881437	26881437	G	T	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.2178	p.D726E	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	210	1	0.47	275	196	41.61	-	-	-	T	26881437	G	T	26881437	3	4	305	1	0	0	0	0	1	0	0	0	3146	1252	44	4	195	4	CDH9	5	26881437	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		26881437	154033823	7	33968										
APC	0	genome.wustl.edu	37	chr5	112179286	112179286	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gtgagaattgaggactgtccCattaacaatcctagatctgg	10	8	1	3			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	5	112179286	112179286	C	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	silent	c.7995	p.P2665	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	86	0	0	118	71	37.57	-	-	-	G	112179286	C	G	112179286	2	3	305	1	0	0	0	0	0	0	0	1	764	581	21	4		4	APC	5	112179286	Silent	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	85297849	112179286	68735974	8	33969										
PCDHAC1	0	genome.wustl.edu	37	chr5	140307132	140307132	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	cccgctcaggagacgcacaaGtcaccatcattgtggtggac	11	13	3	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	5	140307132	140307132	G	C	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.655	p.V219L	0.863	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	26	0	0	23	21	47.73	-	-	-	C	140307132	G	C	140307132	3	2	305	1	0	0	0	0	1	0	0	0	11605	1029	36	4	657	4	PCDHAC1	5	140307132	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	28127846	140307132	40608128	9	33970										
MAT2B	0	genome.wustl.edu	37	chr5	162943532	162943532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	attcttctctaggagctgctGttttgaggattcctattctg	9	8	3	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	5	162943532	162943532	G	T	SNP	MAT2B	ENST00000321757	human	ensembl	69_37n	1	known	missense	c.535	p.V179F	1.000	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	MAT2B	HGNC	ENSG00000038274	131	0	0	269	147	35.34	-	-	-	T	162943532	G	T	162943532	3	4	305	1	0	0	0	0	1	0	0	0	9402	1377	48	4	587	4	MAT2B	5	162943532	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	22636400	162943532	17971728	10	33971										
GPLD1	0	genome.wustl.edu	37	chr6	24456781	24456781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	agatgctaaggggctggagaCgtgcttttgtgacaactgag	15	6	0	4			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	6	24456781	24456781	C	T	SNP	GPLD1	ENST00000230036	human	ensembl	69_37n	-1	known	missense	c.1093	p.V365I	0.001	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293	125	0	0	230	162	41.33	-	-	-	T	24456781	C	T	24456781	3	4	305	1	0	0	0	0	1	0	0	0	6664	536	19	1	1481	1	GPLD1	6	24456781	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09		24456781	146658286	11	33972										
HDDC2	0	genome.wustl.edu	37	chr6	125614019	125614019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	atagagctcctttctgaggtCctctggtaggagctgggtta	13	8	2	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	6	125614019	125614019	C	T	SNP	HDDC2	ENST00000398153	human	ensembl	69_37n	-1	known	missense	c.346	p.D116N	0.998	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906	175	0	0	190	145	43.28	-	-	-	T	125614019	C	T	125614019	3	4	305	1	0	0	0	0	1	0	0	0	7067	855	30	2	280	2	HDDC2	6	125614019	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	101157238	125614019	45501048	12	33973										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	14	0	0	38	5	11.63	-	-	-	-	150884268	AG	-	150884267	7	5	305	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-AN-A0XR-01A-11D-A10G-09		150884267	8254396	13	33974										
INTS8	0	genome.wustl.edu	37	chr8	95892348	95892348	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	acttttctgttttggaagatCaaagccatcggccagacaga	9	9	2	3			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	8	95892348	95892348	C	G	SNP	INTS8	ENST00000520526	human	ensembl	69_37n	1	novel	nonsense	c.2288	p.S763*	0.897	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS8	HGNC	ENSG00000164941	100	0	0	150	88	36.97	-	-	-	G	95892348	C	G	95892348	4	3	305	1	0	0	0	0	0	1	0	0	7838	816	29	2	2980	2	INTS8	8	95892348	Nonsense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09		95892348	50471674	14	33975										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	111	0	0	116	62	34.83	-	-	-	G	8115875	-	G	8115874	7	5	305	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-AN-A0XR-01A-11D-A10G-09		8115874	127418873	15	33976										
C11orf63	0	genome.wustl.edu	37	chr11	122805197	122805197	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	taccaagagggcaaccttctGacatggtgaatgaccatcaa	9	10	2	4			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	11	122805197	122805197	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.1048	p.D350N	0.072	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	47	0	0	85	72	45.86	-	-	-	A	122805197	G	A	122805197	3	1	305	1	0	0	0	0	1	0	0	0	1665	1290	45	2	1126	2	C11orf63	11	122805197	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		122805197	12201319	16	33977										
IQSEC3	0	genome.wustl.edu	37	chr12	247616	247616	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	tgcggtcacccacggccgagAgcctggcggccgagaaagcg	16	14	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	12	247616	247616	A	T	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.1087	p.S363C	0.999	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	18	0	0	14	18	56.25	-	-	-	T	247616	A	T	247616	3	4	305	1	0	0	0	0	1	0	0	0	7873	304	11	5	1101	5	IQSEC3	12	247616	Missense_Mutation	SNP	A	TCGA-AN-A0XR-01A-11D-A10G-09		247616	133604279	17	33978										
EEA1	0	genome.wustl.edu	37	chr12	93192857	93192857	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	agttccaatttcaactgatgAgaagcctgaaagaaaaaaaa	7	6	1	4			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	12	93192857	93192857	A	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.2778	p.S926	0.995	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	94	0	0	107	97	47.09	-	-	-	T	93192857	A	T	93192857	2	4	305	1	0	0	0	0	0	0	0	1	4956	291	11	5		5	EEA1	12	93192857	Silent	SNP	A	TCGA-AN-A0XR-01A-11D-A10G-09	92945241	93192857	40659038	18	33979										
TBX3	0	genome.wustl.edu	37	chr12	115118687	115118688	+	Frame_Shift_Ins	INS	-	-	C													0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gagcaatgaaacttacaaatINSccatgtttgtctgaaatgtt							TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	12	115118687	115118688	-	C	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.654_653	p.F219fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	128	0	0	226	132	36.87	-	-	-	C	115118688	-	C	115118687	7	5	305	1	0	1	1	0	0	0	0	0	15754	1422	50	0	1605	0	TBX3	12	115118687	Frame_Shift_Ins	INS	-	TCGA-AN-A0XR-01A-11D-A10G-09	21925830	115118687	18733208	19	33980										
AKT1	0	genome.wustl.edu	37	chr14	105246445	105246445	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gcgccacagagaagttgttgAggggagcctcacgttggtcc	15	10	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	14	105246445	105246445	A	C	SNP	AKT1	ENST00000349310	human	ensembl	69_37n	-1	known	missense	c.155	p.L52R	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT1	HGNC	ENSG00000142208	74	0	0	11	97	89.81	-	-	-	C	105246445	A	C	105246445	3	2	305	1	0	0	0	0	1	0	0	0	478	304	11	5	1335	5	AKT1	14	105246445	Missense_Mutation	SNP	A	TCGA-AN-A0XR-01A-11D-A10G-09		105246445	2103095	20	33981										
SRCAP	0	genome.wustl.edu	37	chr16	30718965	30718965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gggcccggagggaggagcagGccaagctgcgtcgaattgct	18	10	0	0			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	16	30718965	30718965	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.565	p.A189T	1.000	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	101	0	0	287	121	29.66	-	-	-	A	30718965	G	A	30718965	3	1	305	1	0	0	0	0	1	0	0	0	15226	1203	42	4	579	4	SRCAP	16	30718965	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		30718965	59635788	21	33982										
CMTM2	0	genome.wustl.edu	37	chr16	66613573	66613573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	ccagctccacctccacccggGgccaaacccgaggaagacaa	9	18	0	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	16	66613573	66613573	G	A	SNP	CMTM2	ENST00000268595	human	ensembl	69_37n	1	known	silent	c.63	p.G21	0.001	NULL	NULL	-	no_errors	CMTM2	HGNC	ENSG00000140932	40	0	0	13	39	75	-	-	-	A	66613573	G	A	66613573	2	1	305	1	0	0	0	0	0	0	0	1	3613	1219	43	4		4	CMTM2	16	66613573	Silent	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	35894608	66613573	23741180	22	33983										
PRMT7	0	genome.wustl.edu	37	chr16	68389705	68389705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	atgccgcagcctctccgagcCctggcagatcctgacctttg	10	16	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	16	68389705	68389705	C	G	SNP	PRMT7	ENST00000339507	human	ensembl	69_37n	1	known	missense	c.1730	p.P577R	0.171	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	29	0	0	2	13	86.67	-	-	-	G	68389705	C	G	68389705	3	3	305	1	0	0	0	0	1	0	0	0	12622	623	22	4	1788	4	PRMT7	16	68389705	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	1776132	68389705	21965048	23	33984										
MAP2K4	0	genome.wustl.edu	37	chr17	11998971	11998972	+	Frame_Shift_Ins	INS	-	-	C													0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gtaatgcggagtagtgattgINScccatacattgttcagtttt							TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	17	11998971	11998972	-	C	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_ins	c.506_507	p.Y171fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	194	0	0	117	225	65.79	-	-	-	C	11998972	-	C	11998971	7	5	305	1	0	1	1	0	0	0	0	0	9310	1319	46	0	487	0	MAP2K4	17	11998971	Frame_Shift_Ins	INS	-	TCGA-AN-A0XR-01A-11D-A10G-09		11998971	69196239	24	33985										
PTBP1	0	genome.wustl.edu	37	chr19	808664	808664	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gaccagggcctgaccaaggaCtacggcaactcacccctgca	10	16	1	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	19	808664	808664	C	G	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	missense	c.1365	p.D455E	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	25	0	0	36	24	40	-	-	-	G	808664	C	G	808664	3	3	305	1	0	0	0	0	1	0	0	0	12805	564	20	4	1415	4	PTBP1	19	808664	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09		808664	58320319	25	33986										
STXBP2	0	genome.wustl.edu	37	chr19	7712301	7712301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	aagcccgggcgggcccccggCtcatcgtgtatgtcatgggc	15	14	2	0			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	19	7712301	7712301	C	T	SNP	STXBP2	ENST00000441779	human	ensembl	69_37n	1	known	missense	c.1633	p.L545F	0.998	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	19	0	0	9	18	66.67	-	-	-	T	7712301	C	T	7712301	3	4	305	1	0	0	0	0	1	0	0	0	15444	797	28	4	1670	4	STXBP2	19	7712301	Missense_Mutation	SNP	C	TCGA-AN-A0XR-01A-11D-A10G-09	6903637	7712301	51416682	26	33987										
OR2Z1	0	genome.wustl.edu	37	chr19	8841539	8841539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	cgttcttctcttcttgatccGtgtggactcccggctccata	8	14	3	1			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	19	8841539	8841539	G	A	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	missense	c.149	p.R50H	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	121	1	0.82	214	171	44.42	-	-	-	A	8841539	G	A	8841539	3	1	305	1	0	0	0	0	1	0	0	0	11109	1145	40	1	151	1	OR2Z1	19	8841539	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	1129238	8841539	50287444	27	33988										
NWD1	0	genome.wustl.edu	37	chr19	16860188	16860188	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	ctcaagacccaccgcctgccGtggagccgcgacttggtgaa	12	15	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	19	16860188	16860188	G	A	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	silent	c.735	p.P245	0.558	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	35	0	0	26	27	50.94	-	-	-	A	16860188	G	A	16860188	2	1	305	1	0	0	0	0	0	0	0	1	10854	1132	40	1		1	NWD1	19	16860188	Silent	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09	8018649	16860188	42268795	28	33989										
BRWD1	0	genome.wustl.edu	37	chr21	40587280	40587280	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	tgacttcccaaactaacgcaGacagcctccttcaaaataaa	4	13	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	21	40587280	40587280	G	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.3668	p.S1223C	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	197	0	0	233	179	43.45	-	-	-	C	40587280	G	C	40587280	3	2	305	1	0	0	0	0	1	0	0	0	1533	942	33	2	3577	2	BRWD1	21	40587280	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		40587280	7542615	29	33990										
GNL3L	0	genome.wustl.edu	37	chrX	54574726	54574726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.166666666666667	5	0.378231921467489	1.80722891566265	2.28915662650602	1.58480074142725	1	1	0	gaaaagcaaagcctgctttgGagctgaaaacctcatgaggg	12	8	1	2			TCGA-AN-A0XR-01A-11D-A10G-09	TCGA-AN-A0XR-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e7dc7492-3a84-49c7-8dea-8f508b53dc40	974aff12-3ec4-41e2-852a-837a513edd6c	X	54574726	54574726	G	T	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.695	p.G232V	1.000	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	121	0	0	196	136	40.84	-	-	-	T	54574726	G	T	54574726	3	4	305	1	0	0	0	0	1	0	0	0	6590	1174	41	2	725	2	GNL3L	23	54574726	Missense_Mutation	SNP	G	TCGA-AN-A0XR-01A-11D-A10G-09		54574726	100695834	30	33991										
TNFRSF8	0	genome.wustl.edu	37	chr1	12157238	12157238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ctgactactacctggatgagGccgaccgctgtacagcctgc	11	14	0	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	12157238	12157238	G	T	SNP	TNFRSF8	ENST00000263932	human	ensembl	69_37n	1	known	missense	c.232	p.A78S	0.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_8	-	no_errors	TNFRSF8	HGNC	ENSG00000120949	115	0	0	95	47	32.87	-	-	-	T	12157238	G	T	12157238	3	4	306	1	0	0	0	0	1	0	0	0	16394	1203	42	4	242	4	TNFRSF8	1	12157238	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		12157238	237093383	1	33992										
ROR1	0	genome.wustl.edu	37	chr1	64643303	64643303	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ttcaacaagaagcctccctaAtggcagaactgcaccacccc	6	16	1	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	64643303	64643303	A	C	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.1579	p.M527L	0.865	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	89	0	0	64	36	36	-	-	-	C	64643303	A	C	64643303	3	2	306	1	0	0	0	0	1	0	0	0	13612	101	4	5	1621	5	ROR1	1	64643303	Missense_Mutation	SNP	A	TCGA-AN-A0XS-01A-22D-A10G-09	52486065	64643303	184607318	2	33993										
RCSD1	0	genome.wustl.edu	37	chr1	167667018	167667018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	aggctgcagcccccagaccgGccctgcccagctggagacca	12	18	0	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	1	167667018	167667018	G	T	SNP	RCSD1	ENST00000367854	human	ensembl	69_37n	1	known	missense	c.1157	p.G386V	0.000	NULL	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771	24	0	0	25	6	19.35	-	-	-	T	167667018	G	T	167667018	3	4	306	1	0	0	0	0	1	0	0	0	13268	1203	42	4	1179	4	RCSD1	1	167667018	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09	103023715	167667018	81583603	3	33994										
THNSL2	0	genome.wustl.edu	37	chr2	88482500	88482500	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tggagagggtgttctggctgCtctctggctctgacagccag							TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	88482500	88482500	C	-	DEL	THNSL2	ENST00000324166	human	ensembl	69_37n	1	known	frame_shift_del	c.985	p.L329fs	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	82	0	0	88	26	22.41	-	-	-	-	88482500	C	-	88482500	7	5	306	1	0	1	0	1	0	0	0	0	15958	797	28	0	1007	0	THNSL2	2	88482500	Frame_Shift_Del	DEL	C	TCGA-AN-A0XS-01A-22D-A10G-09		88482500	154716873	4	33995										
ACVR2A	0	genome.wustl.edu	37	chr2	148680662	148680662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tcctatgggaactggcttctCgctgtactgctgcagatggt	12	10	1	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	148680662	148680662	C	T	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.1198	p.R400C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	86	0	0	100	55	35.48	-	-	-	T	148680662	C	T	148680662	3	4	306	1	0	0	0	0	1	0	0	0	223	884	31	1	1232	1	ACVR2A	2	148680662	Missense_Mutation	SNP	C	TCGA-AN-A0XS-01A-22D-A10G-09	60198162	148680662	94518711	5	33996										
AOX1	0	genome.wustl.edu	37	chr2	201523988	201523988	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tatctctggaggttctgtggTggcagatctcaacggtttgg	14	7	3	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	201523988	201523988	T	A	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	missense	c.3272	p.V1091E	0.997	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	105	0	0	79	36	31.3	-	-	-	A	201523988	T	A	201523988	3	1	306	1	0	0	0	0	1	0	0	0	730	1696	59	5	3382	5	AOX1	2	201523988	Missense_Mutation	SNP	T	TCGA-AN-A0XS-01A-22D-A10G-09	52843326	201523988	41675385	6	33997										
ATIC	0	genome.wustl.edu	37	chr2	216177253	216177253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tctctgacaaaaccggccttGtggaatttgcaagaaacctg	9	10	1	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	2	216177253	216177253	G	A	SNP	ATIC	ENST00000236959	human	ensembl	69_37n	1	known	missense	c.52	p.V18M	0.994	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363	150	0	0	90	50	35.71	-	-	-	A	216177253	G	A	216177253	3	1	306	1	0	0	0	0	1	0	0	0	1109	1377	48	4	58	4	ATIC	2	216177253	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09	14653265	216177253	27022120	7	33998										
PDZRN3	0	genome.wustl.edu	37	chr3	73433946	73433946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ggaggatgcggtggcgtcgtCgccattgttctcttgctccg	15	11	1	0			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	3	73433946	73433946	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.1771	p.D591N	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	51	0	0	68	32	32	-	-	-	T	73433946	C	T	73433946	3	4	306	1	0	0	0	0	1	0	0	0	11782	884	31	1	1433	1	PDZRN3	3	73433946	Missense_Mutation	SNP	C	TCGA-AN-A0XS-01A-22D-A10G-09		73433946	124588484	8	33999										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	117	0	0	104	39	27.27	-	-	-	A	178936091	G	A	178936091	3	1	306	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09	105502145	178936091	19086339	9	34000										
MAP3K1	0	genome.wustl.edu	37	chr5	56155725	56155726	+	Frame_Shift_Del	DEL	AG	AG	-													0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ctccaggagtaaggagaaaaAgagtttccccagtgcctgta							TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	56155725	56155726	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.817_818	p.R273fs	0.959:0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	49	0	0	42	18	30	-	-	-	-	56155726	AG	-	56155725	7	5	306	1	0	1	0	1	0	0	0	0	9314	64	3	0	827	0	MAP3K1	5	56155725	Frame_Shift_Del	DEL	AG	TCGA-AN-A0XS-01A-22D-A10G-09		56155725	124759535	10	34001										
SLC25A2	0	genome.wustl.edu	37	chr5	140682837	140682837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	catcttttgatctccctgacGcaaaaaacgatcggctcagt	7	12	3	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	140682837	140682837	G	A	SNP	SLC25A2	ENST00000239451	human	ensembl	69_37n	-1	known	missense	c.596	p.A199V	0.995	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329	117	0	0	98	45	31.47	-	-	-	A	140682837	G	A	140682837	3	1	306	1	0	0	0	0	1	0	0	0	14571	1087	38	1	313	1	SLC25A2	5	140682837	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09	84527112	140682837	40232423	11	34002										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171766645	171766645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	aggacatccttactgcccttCcagtctttagaccatggcaa	7	13	1	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	5	171766645	171766645	C	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.1464	p.W488C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	62	0	0	49	30	37.97	-	-	-	A	171766645	C	A	171766645	3	1	306	1	0	0	0	0	1	0	0	0	14346	856	30	2	1275	2	SH3PXD2B	5	171766645	Missense_Mutation	SNP	C	TCGA-AN-A0XS-01A-22D-A10G-09	31083808	171766645	9148615	12	34003										
ABT1	0	genome.wustl.edu	37	chr6	26598210	26598210	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	aaaagcggtcctacaccaagGactacaccgagggatgggtg	13	10	0	0			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	6	26598210	26598210	G	T	SNP	ABT1	ENST00000274849	human	ensembl	69_37n	1	known	missense	c.310	p.D104Y	1.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109	28	0	0	21	11	34.38	-	-	-	T	26598210	G	T	26598210	3	4	306	1	0	0	0	0	1	0	0	0	101	1174	41	2	316	2	ABT1	6	26598210	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		26598210	144516857	13	34004										
CRHR2	0	genome.wustl.edu	37	chr7	30704716	30704716	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tcgtgcacttcatggtcaacGagctgcagcaggaaccacat	10	12	2	0			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	7	30704716	30704716	G	A	SNP	CRHR2	ENST00000348438	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR2	HGNC	ENSG00000106113	65	0	0	53	25	32.05	-	-	-	A	30704716	G	A	30704716	2	1	306	1	0	0	0	0	0	0	0	1	3902	1045	37	1		1	CRHR2	7	30704716	Silent	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		30704716	128433947	14	34005										
TAF3	0	genome.wustl.edu	37	chr10	8006100	8006103	+	Frame_Shift_Del	DEL	ATTG	ATTG	-													0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	gacacgctagatgttgtgttAttggaagctcgagagccact							TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	ATTG	ATTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	10	8006100	8006103	ATTG	-	DEL	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	frame_shift_del	c.627_630	p.L210fs	0.166:0.220:0.877:0.928	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	50	0	0	43	24	32.88	-	-	-	-	8006103	ATTG	-	8006100	7	5	306	1	0	1	0	1	0	0	0	0	15617	446	16	0	637	0	TAF3	10	8006100	Frame_Shift_Del	DEL	ATTG	TCGA-AN-A0XS-01A-22D-A10G-09		8006100	127528647	15	34006										
PHLDB1	0	genome.wustl.edu	37	chr11	118486807	118486807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	catctcactacagggcccagGcctggctccagagcactgct	10	16	1	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	11	118486807	118486807	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.236	p.G79D	1.000	superfamily_SMAD_FHA_domain	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	55	0	0	46	12	20.69	-	-	-	A	118486807	G	A	118486807	3	1	306	1	0	0	0	0	1	0	0	0	11925	1203	42	4	246	4	PHLDB1	11	118486807	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		118486807	16519709	16	34007										
XRCC6BP1	0	genome.wustl.edu	37	chr12	58339430	58339430	+	Frame_Shift_Del	DEL	G	G	-													0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	gatccatatgtcaaacttctGcttgatgctatgaaacactc							TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	58339430	58339430	G	-	DEL	XRCC6BP1	ENST00000300145	human	ensembl	69_37n	1	known	frame_shift_del	c.207	p.D71fs	0.001	pfam_Peptidase_M76_ATP23	pfam_Peptidase_M76_ATP23	-	no_errors	XRCC6BP1	HGNC	ENSG00000166896	266	0	0	231	89	27.22	-	-	-	-	58339430	G	-	58339430	7	5	306	1	0	1	0	1	0	0	0	0	17555	1306	46	0	213	0	XRCC6BP1	12	58339430	Frame_Shift_Del	DEL	G	TCGA-AN-A0XS-01A-22D-A10G-09		58339430	75512465	17	34008	277	2								
XRCC6BP1	0	genome.wustl.edu	37	chr12	58339432	58339432	+	Frame_Shift_Del	DEL	T	T	-													0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tccatatgtcaaacttctgcTtgatgctatgaaacactcag							TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	58339432	58339432	T	-	DEL	XRCC6BP1	ENST00000300145	human	ensembl	69_37n	1	known	frame_shift_del	c.209	p.D71fs	0.993	pfam_Peptidase_M76_ATP23	pfam_Peptidase_M76_ATP23	-	no_errors	XRCC6BP1	HGNC	ENSG00000166896	270	0	0	233	89	27.05	-	-	-	-	58339432	T	-	58339432	7	5	306	1	0	1	0	1	0	0	0	0	17555	1609	56	0	215	0	XRCC6BP1	12	58339432	Frame_Shift_Del	DEL	T	TCGA-AN-A0XS-01A-22D-A10G-09	2	58339432	75512463	18	34009	277	2								
NT5DC3	0	genome.wustl.edu	37	chr12	104208866	104208866	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ttgagaaaatggcatctggaTtcaacaagttgctcataatg	9	6	3	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	12	104208866	104208866	T	A	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	missense	c.242	p.N81I	1.000	superfamily_HAD-like_dom,pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696	125	0	0	120	52	30.23	-	-	-	A	104208866	T	A	104208866	3	1	306	1	0	0	0	0	1	0	0	0	10765	1493	52	5	1456	5	NT5DC3	12	104208866	Missense_Mutation	SNP	T	TCGA-AN-A0XS-01A-22D-A10G-09	45869434	104208866	29643029	19	34010										
INO80	0	genome.wustl.edu	37	chr15	41275191	41275191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ggcccttccctgctcctttgGctgtgcttcctgaacctttg	9	15	0	1			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	15	41275191	41275191	G	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.4322	p.A1441V	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	25	0	0	32	14	30.43	-	-	-	A	41275191	G	A	41275191	3	1	306	1	0	0	0	0	1	0	0	0	7800	1203	42	4	356	4	INO80	15	41275191	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		41275191	61256201	20	34011										
PTPRM	0	genome.wustl.edu	37	chr18	8088802	8088802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	ttgaatcaaactgacaatacCgtgacagtcatgctgaaacc	7	10	2	4			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	18	8088802	8088802	C	T	SNP	PTPRM	ENST00000583289	human	ensembl	69_37n	1	novel	missense	c.227	p.P76L	0.007	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon	PTPRM	HGNC	ENSG00000173482	148	0	0	147	44	23.04	-	-	-	T	8088802	C	T	8088802	3	4	306	1	0	0	0	0	1	0	0	0	12889	639	23	1	1851	1	PTPRM	18	8088802	Missense_Mutation	SNP	C	TCGA-AN-A0XS-01A-22D-A10G-09		8088802	69988446	21	34012										
C18orf54	0	genome.wustl.edu	37	chr18	51889197	51889197	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	gaaatctagagcagtgtactGaagaattaccaaagtccatg	9	7	1	3			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	18	51889197	51889197	G	A	SNP	C18orf54	ENST00000300091	human	ensembl	69_37n	1	known	missense	c.646	p.E216K	0.811	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845	161	0	0	125	42	25.15	-	-	-	A	51889197	G	A	51889197	3	1	306	1	0	0	0	0	1	0	0	0	1921	1291	45	2	656	2	C18orf54	18	51889197	Missense_Mutation	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09	43800395	51889197	26188051	22	34013										
SLC44A2	0	genome.wustl.edu	37	chr19	10742416	10742416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	aaacatcacagacctggtggAgggcgccaagtgaggatatt	13	8	1	2			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	19	10742416	10742416	A	G	SNP	SLC44A2	ENST00000335757	human	ensembl	69_37n	1	known	missense	c.617	p.E206G	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	59	0	0	69	40	36.7	-	-	-	G	10742416	A	G	10742416	3	3	306	1	0	0	0	0	1	0	0	0	14725	304	11	5	682	5	SLC44A2	19	10742416	Missense_Mutation	SNP	A	TCGA-AN-A0XS-01A-22D-A10G-09		10742416	48386567	23	34014										
SLC4A11	0	genome.wustl.edu	37	chr20	3214874	3214874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tccagggaggtggccgtctcGttcaggacgatgctggcctg	16	11	2	0			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	20	3214874	3214874	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	silent	c.507	p.N169	0.722	superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	71	0	0	74	41	35.65	-	-	-	A	3214874	G	A	3214874	2	1	306	1	0	0	0	0	0	0	0	1	14741	1136	40	1		1	SLC4A11	20	3214874	Silent	SNP	G	TCGA-AN-A0XS-01A-22D-A10G-09		3214874	59810646	24	34015										
ATP9A	0	genome.wustl.edu	37	chr20	50287755	50287755	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.838189499355901	1.24712643678161	NA	1.24712643678161	0.333333333333333	0.930327025915261	0	tcgagtcccttcgaatcaccCagctgtacacgatcttgccc	7	16	2	0			TCGA-AN-A0XS-01A-22D-A10G-09	TCGA-AN-A0XS-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1b5268d-556f-404f-a956-770df4a1e7aa	3a722354-b991-44cf-9ab8-f276b4a38701	20	50287755	50287755	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	nonsense	c.1079	p.W360*	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	84	0	0	74	32	30.19	-	-	-	T	50287755	C	T	50287755	4	4	306	1	0	0	0	0	0	1	0	0	1202	595	21	4	2132	4	ATP9A	20	50287755	Nonsense_Mutation	SNP	C	TCGA-AN-A0XS-01A-22D-A10G-09	47072881	50287755	12737765	25	34016										
EIF2C3	0	genome.wustl.edu	37	chr1	36509128	36509128	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	tatgagttcgatttttacctCtgtagccatgctggaataca	8	8	1	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	1	36509128	36509128	C	T	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	silent	c.2253	p.L751	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	168	0	0	119	93	43.87	-	-	-	T	36509128	C	T	36509128	2	4	307	1	0	0	0	0	0	0	0	1	5042	900	32	2		2	EIF2C3	1	36509128	Silent	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		36509128	212741493	1	34017										
FAM179A	0	genome.wustl.edu	37	chr2	29259479	29259479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	agtgggcgctggagtccttcGccaagatgatccccctcctc	11	15	0	2			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	2	29259479	29259479	G	A	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.2491	p.A831T	0.007	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	166	0	0	91	38	29.46	-	-	-	A	29259479	G	A	29259479	3	1	307	1	0	0	0	0	1	0	0	0	5545	1087	38	1	2557	1	FAM179A	2	29259479	Missense_Mutation	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09		29259479	213939894	2	34018										
ACTR2	0	genome.wustl.edu	37	chr2	65455000	65455000	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	gaaaacggccgggcggcggtGgctgtaggttgtgcggctgc	20	9	0	0			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	2	65455000	65455000	G	A	SNP	ACTR2	ENST00000471552	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ACTR2	HGNC	ENSG00000138071	78	0	0	39	14	26.42	-	-	-	A	65455000	G	A	65455000	1	1	307	0	1	0	0	0	0	0	0	0	211	1363	47	4		4	ACTR2	2	65455000	RNA	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09	36195521	65455000	177744373	3	34019										
TREM1	0	genome.wustl.edu	37	chr6	41243863	41243863	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	attctcgtgggttcgtgggcCtagggtacaaatgacctcag	13	9	2	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	6	41243863	41243863	C	T	SNP	TREM1	ENST00000244709	human	ensembl	69_37n	-1	known	silent	c.705	p.*235	0.022	NULL	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	193	0	0	120	58	32.58	-	-	-	T	41243863	C	T	41243863	2	4	307	1	0	0	0	0	0	0	0	1	16566	692	24	4		4	TREM1	6	41243863	Silent	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		41243863	129871204	4	34020										
TMED4	0	genome.wustl.edu	37	chr7	44621754	44621754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	ggcgcacagcgcgagaagcaGcagggcctgccgccccatcg	15	16	0	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	44621754	44621754	G	A	SNP	TMED4	ENST00000457408	human	ensembl	69_37n	-1	known	silent	c.52	p.L18	0.418	NULL	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED4	HGNC	ENSG00000158604	14	0	0	11	5	31.25	-	-	-	A	44621754	G	A	44621754	2	1	307	1	0	0	0	0	0	0	0	1	16101	962	34	4		4	TMED4	7	44621754	Silent	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09		44621754	114516909	5	34021										
HTR5A	0	genome.wustl.edu	37	chr7	154862859	154862859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	acctggtggcatccatggccGtctcggatgtcctggtggcc	14	13	1	0			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	154862859	154862859	G	A	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	1	known	missense	c.250	p.V84I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	67	0	0	26	30	53.57	-	-	-	A	154862859	G	A	154862859	3	1	307	1	0	0	0	0	1	0	0	0	7504	1145	40	1	252	1	HTR5A	7	154862859	Missense_Mutation	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09	110241105	154862859	4275804	6	34022										
LMBR1	0	genome.wustl.edu	37	chr7	156619309	156619309	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	atatactaaccatgaatcagGgagccatttagccactgaat	7	9	1	2			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	156619309	156619309	G	A	SNP	LMBR1	ENST00000354505	human	ensembl	69_37n	-1	known	silent	c.309	p.S103	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983	116	0	0	85	45	34.35	-	-	-	A	156619309	G	A	156619309	2	1	307	1	0	0	0	0	0	0	0	1	8896	1219	43	4		4	LMBR1	7	156619309	Silent	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09	1756450	156619309	2519354	7	34023										
PCSK5	0	genome.wustl.edu	37	chr9	78790207	78790207	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	ggaatcgaatcgaatcgaatCgaatagaatagaatagaata	9	4	0	3			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	9	78790207	78790207	C	A	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	1	known	silent	c.2062	p.R688	0.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	10	0	0	13	6	31.58	-	-	-	A	78790207	C	A	78790207	2	1	307	1	0	0	0	0	0	0	0	1	11676	899	31	3		3	PCSK5	9	78790207	Silent	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		78790207	62423224	8	34024										
TULP3	0	genome.wustl.edu	37	chr12	3040249	3040249	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	tgccgcccaaccagctgataAcctcctgggagacatagacg	10	14	0	3			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	12	3040249	3040249	A	G	SNP	TULP3	ENST00000228245	human	ensembl	69_37n	1	known	missense	c.539	p.N180S	0.000	superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	119	0	0	90	76	45.78	-	-	-	G	3040249	A	G	3040249	3	3	307	1	0	0	0	0	1	0	0	0	16872	43	2	5	561	5	TULP3	12	3040249	Missense_Mutation	SNP	A	TCGA-AN-A0XT-01A-11D-A10G-09		3040249	130811646	9	34025										
LPAR6	0	genome.wustl.edu	37	chr13	48986180	48986180	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	ttgcatttcttttggttcttAgagtctttgacttaaatggg	9	5	3	2			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	13	48986180	48986180	A	G	SNP	LPAR6	ENST00000345941	human	ensembl	69_37n	-1	known	missense	c.380	p.L127P	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y5_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	LPAR6	HGNC	ENSG00000139679	67	0	0	18	25	58.14	-	-	-	G	48986180	A	G	48986180	3	3	307	1	0	0	0	0	1	0	0	0	8975	420	15	5	658	5	LPAR6	13	48986180	Missense_Mutation	SNP	A	TCGA-AN-A0XT-01A-11D-A10G-09		48986180	66183698	10	34026										
RPL4	0	genome.wustl.edu	37	chr15	66795050	66795050	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	ctacgatgccaacggcgccaGgttttggttggtgcaaacat	12	10	0	0			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	15	66795050	66795050	G	A	SNP	RPL4	ENST00000307961	human	ensembl	69_37n	-1	known	silent	c.321	p.T107	0.939	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	-	no_errors	RPL4	HGNC	ENSG00000174444	229	0	0	185	114	38.13	-	-	-	A	66795050	G	A	66795050	2	1	307	1	0	0	0	0	0	0	0	1	13681	987	35	4		4	RPL4	15	66795050	Silent	SNP	G	TCGA-AN-A0XT-01A-11D-A10G-09		66795050	35736342	11	34027										
ADAMTS17	0	genome.wustl.edu	37	chr15	100649205	100649205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	gtacgtcacctggcacttgcCgtgcacgcagagatcagtct	11	13	3	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	15	100649205	100649205	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.2005	p.G669S	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	74	0	0	30	18	37.5	-	-	-	T	100649205	C	T	100649205	3	4	307	1	0	0	0	0	1	0	0	0	262	652	23	1	1318	1	ADAMTS17	15	100649205	Missense_Mutation	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09	33854155	100649205	1882187	12	34028										
TP53	0	genome.wustl.edu	37	chr17	7578555	7578555	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	ttgttgagggcaggggagtaCtgtaggaagaggaaggagac	19	3	0	3			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	17	7578555	7578555	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	92	0	0	10	33	76.74	-	-	-	T	7578555	C	T	7578555	5	4	307	1	0	0	0	0	0	0	1	0	16477	579	20	4	923	4	TP53	17	7578555	Splice_Site	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		7578555	73616655	13	34029										
DHDH	0	genome.wustl.edu	37	chr19	49438313	49438313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	aaggagtttgcacagaaacaCgacatccccaaggcctacgg	10	12	0	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	19	49438313	49438313	C	T	SNP	DHDH	ENST00000221403	human	ensembl	69_37n	1	known	silent	c.147	p.H49	0.108	pfam_Oxidoreductase_N	pfam_Oxidoreductase_N	-	no_errors	DHDH	HGNC	ENSG00000104808	44	0	0	21	18	46.15	-	-	-	T	49438313	C	T	49438313	2	4	307	1	0	0	0	0	0	0	0	1	4515	535	19	1		1	DHDH	19	49438313	Silent	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		49438313	9690670	14	34030										
COL6A2	0	genome.wustl.edu	37	chr21	47549113	47549113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	tggacgctcccttgcagatgCaccgtggcctggcggcgagc	15	14	0	1			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	21	47549113	47549113	C	T	SNP	COL6A2	ENST00000357838	human	ensembl	69_37n	1	known	missense	c.2465	p.A822V	0.193	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	18	0	0	16	10	38.46	-	-	-	T	47549113	C	T	47549113	3	4	307	1	0	0	0	0	1	0	0	0	3730	710	25	4	2601	4	COL6A2	21	47549113	Missense_Mutation	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		47549113	580782	15	34031										
POLR2F	0	genome.wustl.edu	37	chr22	38349806	38349806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.957008104689917	0.833333333333333	NA	0.833333333333333	1	1	0	gagggtgtcatgtcagacaaCgaggacaagtgagtgcggga	17	6	2	2			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	22	38349806	38349806	C	A	SNP	POLR2F	ENST00000442738	human	ensembl	69_37n	1	known	missense	c.12	p.N4K	1.000	superfamily_RNA_poly_omega/K/RPABC2	pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2	-	no_errors	POLR2F	HGNC	ENSG00000100142	84	0	0	26	31	54.39	-	-	-	A	38349806	C	A	38349806	3	1	307	1	0	0	0	0	1	0	0	0	12293	535	19	3	14	3	POLR2F	22	38349806	Missense_Mutation	SNP	C	TCGA-AN-A0XT-01A-11D-A10G-09		38349806	12954760	16	34032										
SPEN	0	genome.wustl.edu	37	chr1	16199441	16199442	+	Frame_Shift_Del	DEL	AG	AG	-													0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cggtcaacaaaatgggtgacAgagacctacgcacggattat							TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	16199441	16199442	AG	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.214_215	p.D73fs	1.000:1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	100	0	0	41	37	47.44	-	-	-	-	16199442	AG	-	16199441	7	5	308	1	0	1	0	1	0	0	0	0	15129	180	7	0	220	0	SPEN	1	16199441	Frame_Shift_Del	DEL	AG	TCGA-AN-A0XU-01A-11D-A10G-09		16199441	233051180	1	34033										
NASP	0	genome.wustl.edu	37	chr1	46072992	46072992	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tcatgttctttaaccatgtaGaggaagcaagggaagagttg	12	5	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	46072992	46072992	G	C	SNP	NASP	ENST00000402363	human	ensembl	69_37n	1	known	splice_site	c.416-1	e6-1	1.000	-	-	-	no_errors	NASP	HGNC	ENSG00000132780	63	0	0	76	15	16.48	-	-	-	C	46072992	G	C	46072992	5	2	308	1	0	0	0	0	0	0	1	0	10244	956	33	2	508	2	NASP	1	46072992	Splice_Site	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	29873551	46072992	203177629	2	34034										
GBP7	0	genome.wustl.edu	37	chr1	89613451	89613451	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	acaaagtcttccttctttttCtccatggtgtcctgccagaa	6	12	3	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	89613451	89613451	C	A	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.1164	p.E388D	0.020	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	152	0	0	69	19	21.35	-	-	-	A	89613451	C	A	89613451	3	1	308	1	0	0	0	0	1	0	0	0	6329	912	32	2	768	2	GBP7	1	89613451	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	43540459	89613451	159637170	3	34035										
HSD3B2	0	genome.wustl.edu	37	chr1	119964794	119964794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tctctacagtcaacccagtcTatgttggcaacgtggcctgg	10	12	3	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	119964794	119964794	T	C	SNP	HSD3B2	ENST00000369416	human	ensembl	69_37n	1	known	missense	c.670	p.Y224H	0.998	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	96	0	0	31	14	31.11	-	-	-	C	119964794	T	C	119964794	3	2	308	1	0	0	0	0	1	0	0	0	7442	1522	53	5	680	5	HSD3B2	1	119964794	Missense_Mutation	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09	30351343	119964794	129285827	4	34036										
ITGA10	0	genome.wustl.edu	37	chr1	145527965	145527965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cctgggatgggccttcaggcGaccggaggggggacgtttat	18	9	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	145527965	145527965	G	T	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.202	p.D68Y	0.913	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	41	0	0	6	6	50	-	-	-	T	145527965	G	T	145527965	3	4	308	1	0	0	0	0	1	0	0	0	7927	1058	37	3	212	3	ITGA10	1	145527965	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	25563171	145527965	103722656	5	34037										
RAB13	0	genome.wustl.edu	37	chr1	153955065	153955065	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tcgaaaaatcggattccatgCtctcgagccaactataaggg	9	10	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	153955065	153955065	C	T	SNP	RAB13	ENST00000368575	human	ensembl	69_37n	-1	known	silent	c.426	p.E142	0.995	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545	260	0	0	173	30	14.78	-	-	-	T	153955065	C	T	153955065	2	4	308	1	0	0	0	0	0	0	0	1	12982	796	28	4		4	RAB13	1	153955065	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	8427100	153955065	95295556	6	34038										
ITLN2	0	genome.wustl.edu	37	chr1	160924178	160924178	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	actctcagaagccatttaccTgcactgcacccactggtggc	8	15	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	160924178	160924178	T	G	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	silent	c.78	p.A26	0.018	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	150	0	0	118	19	13.87	-	-	-	G	160924178	T	G	160924178	2	3	308	1	0	0	0	0	0	0	0	1	7965	1594	55	5		5	ITLN2	1	160924178	Silent	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09	6969113	160924178	88326443	7	34039										
NUF2	0	genome.wustl.edu	37	chr1	163318796	163318796	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aacgagtaaccacaattaatCaagaaatccaaaaaattaaa	3	7	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	163318796	163318796	C	G	SNP	NUF2	ENST00000271452	human	ensembl	69_37n	1	known	missense	c.1186	p.Q396E	0.133	NULL	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228	88	0	0	248	33	11.74	-	-	-	G	163318796	C	G	163318796	3	3	308	1	0	0	0	0	1	0	0	0	10820	827	29	2	1232	2	NUF2	1	163318796	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	2394618	163318796	85931825	8	34040										
OR2T12	0	genome.wustl.edu	37	chr1	248458366	248458366	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cctcgcagaagaagtgatcgAtctcgtgtgcaccgcaatat	10	11	1	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	1	248458366	248458366	A	T	SNP	OR2T12	ENST00000317996	human	ensembl	69_37n	-1	known	missense	c.515	p.I172N	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201	241	0	0	113	37	24.67	-	-	-	T	248458366	A	T	248458366	3	4	308	1	0	0	0	0	1	0	0	0	11092	333	12	5	450	5	OR2T12	1	248458366	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	85139570	248458366	792255	9	34041										
GGCX	0	genome.wustl.edu	37	chr2	85777243	85777243	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cgaagtgagatacaagtcatCaggaagctgaaaaacaggaa	11	6	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	85777243	85777243	C	G	SNP	GGCX	ENST00000233838	human	ensembl	69_37n	-1	known	silent	c.2091	p.L697	1.000	NULL	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	45	0	0	36	15	29.41	-	-	-	G	85777243	C	G	85777243	2	3	308	1	0	0	0	0	0	0	0	1	6408	813	29	2		2	GGCX	2	85777243	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		85777243	157422130	10	34042										
MARCO	0	genome.wustl.edu	37	chr2	119727689	119727689	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	atgctgtggggtggggcccaGttctgaatctgcaggcgcgg	18	9	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	119727689	119727689	G	A	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	1	known	splice_site	c.200-1	e3-1	1.000	-	-	-	no_errors	MARCO	HGNC	ENSG00000019169	118	0	0	20	15	42.86	-	-	-	A	119727689	G	A	119727689	5	1	308	1	0	0	0	0	0	0	1	0	9382	1043	36	4	209	4	MARCO	2	119727689	Splice_Site	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	33950446	119727689	123471684	11	34043										
KIF5C	0	genome.wustl.edu	37	chr2	149864578	149864578	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cagctcaccaaagttcacaaGcaggtaggagagttctgccc	10	12	3	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	149864578	149864578	G	C	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.2547	p.K849N	0.996	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	61	0	0	22	13	37.14	-	-	-	C	149864578	G	C	149864578	3	2	308	1	0	0	0	0	1	0	0	0	8359	962	34	4	2559	4	KIF5C	2	149864578	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	30136889	149864578	93334795	12	34044										
SCN3A	0	genome.wustl.edu	37	chr2	166032862	166032862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agattctctagtaaaaaggcGgaagctttcaggtcctgggg	13	7	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	166032862	166032862	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.43	p.R15C	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	189	0	0	94	98	51.04	-	-	-	A	166032862	G	A	166032862	3	1	308	1	0	0	0	0	1	0	0	0	14006	1116	39	1	6159	1	SCN3A	2	166032862	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	16168284	166032862	77166511	13	34045										
XIRP2	0	genome.wustl.edu	37	chr2	168107363	168107363	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ggacagttatgttgaaccccCaccaagaaggcccatgtcgc	10	13	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	168107363	168107363	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9461	p.P3154Q	0.375	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	42	0	0	40	18	31.03	-	-	-	A	168107363	C	A	168107363	3	1	308	1	0	0	0	0	1	0	0	0	17527	594	21	4	9491	4	XIRP2	2	168107363	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	2074501	168107363	75092010	14	34046										
TMEFF2	0	genome.wustl.edu	37	chr2	192820999	192820999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	acctgcaagatggctcctgcAtattgatagaatgctcacac	8	11	1	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	192820999	192820999	A	G	SNP	TMEFF2	ENST00000272771	human	ensembl	69_37n	-1	known	missense	c.851	p.M284T	1.000	pfscan_EG-like_dom	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339	183	0	0	185	22	10.63	-	-	-	G	192820999	A	G	192820999	3	3	308	1	0	0	0	0	1	0	0	0	16109	217	8	5	285	5	TMEFF2	2	192820999	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	24713636	192820999	50378374	15	34047										
NRP2	0	genome.wustl.edu	37	chr2	206631527	206631527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aacccatctcggcttttgcaGgtgagaattttaaaggtaaa	9	7	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	206631527	206631527	G	T	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.2425	p.G809C	1.000	pirsf_Neuropilin	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	180	0	0	673	261	27.94	-	-	-	T	206631527	G	T	206631527	3	4	308	1	0	0	0	0	1	0	0	0	10734	1014	35	4	2510	4	NRP2	2	206631527	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	13810528	206631527	36567846	16	34048										
TRIP12	0	genome.wustl.edu	37	chr2	230678609	230678609	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	atgtgttagcctttgggttaGcaatgggagtgaatctgcca	13	6	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	230678609	230678609	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	silent	c.1819	p.L607	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	63	0	0	36	25	40.98	-	-	-	A	230678609	G	A	230678609	2	1	308	1	0	0	0	0	0	0	0	1	16652	962	34	4		4	TRIP12	2	230678609	Silent	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	24047082	230678609	12520764	17	34049										
ATG16L1	0	genome.wustl.edu	37	chr2	234172686	234172686	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	accaaatgcagcggaaggacAgggagatgcagatgaatgaa	14	6	0	4			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	2	234172686	234172686	A	T	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.364	p.R122W	0.966	pfam_Autophagy-rel_prot_16,superfamily_Prefoldin	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	114	0	0	99	23	18.7	-	-	-	T	234172686	A	T	234172686	3	4	308	1	0	0	0	0	1	0	0	0	1095	179	7	5	378	5	ATG16L1	2	234172686	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	3494077	234172686	9026687	18	34050										
KBTBD5	0	genome.wustl.edu	37	chr3	42733450	42733450	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	caggtgccaccttcctaccaGtgcggctcaatgtgctgtgc	11	14	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	42733450	42733450	G	T	SNP	KBTBD5	ENST00000287777	human	ensembl	69_37n	1	known	missense	c.1831	p.V611L	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD5	HGNC	ENSG00000157119	99	0	0	6	16	72.73	-	-	-	T	42733450	G	T	42733450	3	4	308	1	0	0	0	0	1	0	0	0	8050	1029	36	4	1853	4	KBTBD5	3	42733450	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		42733450	155288980	19	34051										
ITIH4	0	genome.wustl.edu	37	chr3	52858309	52858309	+	Frame_Shift_Del	DEL	C	C	-													0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agcaactgcacagccatcagCattgcatcattgatgttggt							TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	52858309	52858309	C	-	DEL	ITIH4	ENST00000266041	human	ensembl	69_37n	-1	known	frame_shift_del	c.1068	p.M356fs	0.994	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955	51	0	0	13	2	13.33	-	-	-	-	52858309	C	-	52858309	7	5	308	1	0	1	0	1	0	0	0	0	7960	710	25	0	1788	0	ITIH4	3	52858309	Frame_Shift_Del	DEL	C	TCGA-AN-A0XU-01A-11D-A10G-09	10124859	52858309	145164121	20	34052										
GBE1	0	genome.wustl.edu	37	chr3	81635276	81635276	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tctggaattgccatggctagTcgatagtcaaaaccaccccc	8	13	2	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	81635276	81635276	T	G	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	silent	c.1302	p.R434	0.995	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	155	0	0	94	27	22.31	-	-	-	G	81635276	T	G	81635276	2	3	308	1	0	0	0	0	0	0	0	1	6320	1654	58	5		5	GBE1	3	81635276	Silent	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09	28776967	81635276	116387154	21	34053										
STAG1	0	genome.wustl.edu	37	chr3	136078104	136078104	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gggcagatgtcctatctaggTtgggaccttgctcttgaaca	12	9	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	136078104	136078104	T	A	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.2822	p.N941I	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	108	0	0	63	7	10	-	-	-	A	136078104	T	A	136078104	3	1	308	1	0	0	0	0	1	0	0	0	15333	1725	60	5	986	5	STAG1	3	136078104	Missense_Mutation	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09	54442828	136078104	61944326	22	34054										
ESYT3	0	genome.wustl.edu	37	chr3	138183231	138183231	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gaggcagagcagctggcccaGaaggacaactttctggggct	15	10	1	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	138183231	138183231	G	C	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	missense	c.960	p.Q320H	0.803	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	69	0	0	21	6	22.22	-	-	-	C	138183231	G	C	138183231	3	2	308	1	0	0	0	0	1	0	0	0	5303	933	33	2	994	2	ESYT3	3	138183231	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	2105127	138183231	59839199	23	34055										
TNIK	0	genome.wustl.edu	37	chr3	170819300	170819300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gtctcgctctctccatcttcCtcctcttcctcgctactttc	3	19	4	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	3	170819300	170819300	C	T	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	silent	c.2529	p.E843	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	275	0	0	192	114	37.25	-	-	-	T	170819300	C	T	170819300	2	4	308	1	0	0	0	0	0	0	0	1	16408	680	24	4		4	TNIK	3	170819300	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	32636069	170819300	27203130	24	34056										
AMACR	0	genome.wustl.edu	37	chr5	33989557	33989557	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cttcttcttcatttctggccAatcatccatgctcatctgat	4	13	7	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	5	33989557	33989557	A	G	SNP	AMACR	ENST00000335606	human	ensembl	69_37n	-1	known	missense	c.790	p.W264R	1.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110	58	0	0	48	6	11.11	-	-	-	G	33989557	A	G	33989557	3	3	308	1	0	0	0	0	1	0	0	0	562	130	5	5	420	5	AMACR	5	33989557	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09		33989557	146925703	25	34057										
CCDC112	0	genome.wustl.edu	37	chr5	114603600	114603600	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cttctctgtattccttgtctCcaggttggaatagccctaag	8	11	2	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	5	114603600	114603600	C	G	SNP	CCDC112	ENST00000379611	human	ensembl	69_37n	-1	known	missense	c.1563	p.W521C	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221	174	0	0	141	86	37.89	-	-	-	G	114603600	C	G	114603600	3	3	308	1	0	0	0	0	1	0	0	0	2774	856	30	2	30	2	CCDC112	5	114603600	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	80614043	114603600	66311660	26	34058										
RPP40	0	genome.wustl.edu	37	chr6	5000125	5000125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	taagtgtctttatccagtgaCaaaattaatttccctataaa	4	7	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	5000125	5000125	C	A	SNP	RPP40	ENST00000380051	human	ensembl	69_37n	-1	known	missense	c.351	p.L117F	1.000	pfam_RNase_P_Rpp40	pfam_RNase_P_Rpp40	-	no_errors	RPP40	HGNC	ENSG00000124787	90	0	0	45	125	73.53	-	-	-	A	5000125	C	A	5000125	3	1	308	1	0	0	0	0	1	0	0	0	13700	477	17	4	760	4	RPP40	6	5000125	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		5000125	166114942	27	34059										
BAI3	0	genome.wustl.edu	37	chr6	69349109	69349109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gttggagagctgcttaaaatCagaaaatgggagaacagaat	12	4	1	4			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	69349109	69349109	C	T	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.542	p.S181L	0.996	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	28	0	0	44	8	15.38	-	-	-	T	69349109	C	T	69349109	3	4	308	1	0	0	0	0	1	0	0	0	1304	838	29	2	544	2	BAI3	6	69349109	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	64348984	69349109	101765958	28	34060										
ZNF292	0	genome.wustl.edu	37	chr6	87953320	87953320	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gctccaacaaggagatatgtActgcgcttggtgagttgatc	12	8	0	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	87953320	87953320	A	G	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.869	p.Y290C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	131	1	0.76	299	50	14.29	-	-	-	G	87953320	A	G	87953320	3	3	308	1	0	0	0	0	1	0	0	0	17922	391	14	5	891	5	ZNF292	6	87953320	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	18604211	87953320	83161747	29	34061										
SLC35A1	0	genome.wustl.edu	37	chr6	88216123	88216123	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gaacaaaatccattattaggGtttggcgctatagctattgc	9	7	0	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	88216123	88216123	G	T	SNP	SLC35A1	ENST00000369552	human	ensembl	69_37n	1	known	silent	c.531	p.G177	0.759	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A1	HGNC	ENSG00000164414	266	1	0.37	443	89	16.73	-	-	-	T	88216123	G	T	88216123	2	4	308	1	0	0	0	0	0	0	0	1	14659	1248	44	4		4	SLC35A1	6	88216123	Silent	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	262803	88216123	82898944	30	34062										
C6orf170	0	genome.wustl.edu	37	chr6	121577341	121577341	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gaaataaaagctcctttaacCacaggcaacatttctgatcc	5	11	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	121577341	121577341	C	G	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	silent	c.1824	p.V608	0.614	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	103	0	0	111	190	62.91	-	-	-	G	121577341	C	G	121577341	2	3	308	1	0	0	0	0	0	0	0	1	2365	581	21	4		4	C6orf170	6	121577341	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	33361218	121577341	49537726	31	34063										
GJA1	0	genome.wustl.edu	37	chr6	121768943	121768943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ggctaattacagtgcagaacAaaatcgaatggggcaggcgg	14	7	0	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	121768943	121768943	A	G	SNP	GJA1	ENST00000282561	human	ensembl	69_37n	1	known	missense	c.950	p.Q317R	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661	76	0	0	86	13	13.13	-	-	-	G	121768943	A	G	121768943	3	3	308	1	0	0	0	0	1	0	0	0	6452	130	5	5	952	5	GJA1	6	121768943	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	191602	121768943	49346124	32	34064										
AHI1	0	genome.wustl.edu	37	chr6	135787470	135787470	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gcacttacatcatcacttgtAgtttctttaatatggggaag	8	7	3	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	135787470	135787470	A	T	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	silent	c.231	p.T77	0.069	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	274	0	0	420	358	45.9	-	-	-	T	135787470	A	T	135787470	2	4	308	1	0	0	0	0	0	0	0	1	413	407	15	5		5	AHI1	6	135787470	Silent	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	14018527	135787470	35327597	33	34065										
CNKSR3	0	genome.wustl.edu	37	chr6	154762480	154762480	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tggataattttgttcttcgtGactgagaaatcagtgatccc	9	7	2	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	6	154762480	154762480	G	A	SNP	CNKSR3	ENST00000367213	human	ensembl	69_37n	-1	known	silent	c.453	p.V151	0.000	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	-	no_errors	CNKSR3	HGNC	ENSG00000153721	107	0	0	67	16	19.28	-	-	-	A	154762480	G	A	154762480	2	1	308	1	0	0	0	0	0	0	0	1	3638	1277	45	2		2	CNKSR3	6	154762480	Silent	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	18975010	154762480	16352587	34	34066										
INMT	0	genome.wustl.edu	37	chr7	30791789	30791789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gaagggtggcttcactggggGtgatgagtaccagaagcact	16	7	1	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	7	30791789	30791789	G	A	SNP	INMT	ENST00000013222	human	ensembl	69_37n	1	known	missense	c.23	p.G8D	0.000	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644	58	0	0	11	7	38.89	-	-	-	A	30791789	G	A	30791789	3	1	308	1	0	0	0	0	1	0	0	0	7799	1261	44	4	25	4	INMT	7	30791789	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		30791789	128346874	35	34067										
MYO1G	0	genome.wustl.edu	37	chr7	45009012	45009012	+	Frame_Shift_Del	DEL	G	G	-													0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gggtgggagggggcccttacGtgacgtcccctgcatagtgc							TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	7	45009012	45009012	G	-	DEL	MYO1G	ENST00000258787	human	ensembl	69_37n	-1	known	frame_shift_del	c.1574	p.T525fs	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286	57	0	0	11	2	15.38	-	-	-	-	45009012	G	-	45009012	7	5	308	1	0	1	0	1	0	0	0	0	10146	1159	40	0	1526	0	MYO1G	7	45009012	Frame_Shift_Del	DEL	G	TCGA-AN-A0XU-01A-11D-A10G-09	14217223	45009012	114129651	36	34068										
ATXN7L1	0	genome.wustl.edu	37	chr7	105283455	105283455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gggtggagacggcagaggacGaggtggaggaggcagaaact	21	5	0	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	7	105283455	105283455	G	A	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	missense	c.692	p.S231L	0.935	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	404	0	0	146	44	23.16	-	-	-	A	105283455	G	A	105283455	3	1	308	1	0	0	0	0	1	0	0	0	1220	1059	37	1	1928	1	ATXN7L1	7	105283455	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	60274443	105283455	53855208	37	34069										
FLNC	0	genome.wustl.edu	37	chr7	128496688	128496688	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gctgtggaggagtgctacgtCtctgagctggacagtggtga	17	7	1	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	7	128496688	128496688	C	G	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	silent	c.7368	p.V2456	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	82	0	0	7	16	69.57	-	-	-	G	128496688	C	G	128496688	2	3	308	1	0	0	0	0	0	0	0	1	5981	900	32	2		2	FLNC	7	128496688	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	23213233	128496688	30641975	38	34070										
KEL	0	genome.wustl.edu	37	chr7	142658026	142658026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tttcctcacccagtattctcCgaagtcggtttttgttcttt	6	11	3	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	7	142658026	142658026	C	T	SNP	KEL	ENST00000355265	human	ensembl	69_37n	-1	known	missense	c.389	p.R130Q	0.045	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	216	0	0	185	42	18.5	-	-	-	T	142658026	C	T	142658026	3	4	308	1	0	0	0	0	1	0	0	0	8195	652	23	1	1873	1	KEL	7	142658026	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	14161338	142658026	16480637	39	34071										
CPSF1	0	genome.wustl.edu	37	chr8	145625789	145625789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gagcctgggtgcagtcaaagGgcaggctggtgagggaccag	19	8	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	8	145625789	145625789	G	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.785	p.P262H	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	101	0	0	19	8	29.63	-	-	-	T	145625789	G	T	145625789	3	4	308	1	0	0	0	0	1	0	0	0	3854	1232	43	4	3670	4	CPSF1	8	145625789	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		145625789	738233	40	34072										
MYO3A	0	genome.wustl.edu	37	chr10	26436364	26436364	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	atactgtatcaacaggtcctCtataatgcaagtggattctt	7	8	3	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	10	26436364	26436364	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.2511	p.L837	0.961	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	159	0	0	60	14	18.92	-	-	-	T	26436364	C	T	26436364	2	4	308	1	0	0	0	0	0	0	0	1	10148	900	32	2		2	MYO3A	10	26436364	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		26436364	109098383	41	34073										
DNAJC9	0	genome.wustl.edu	37	chr10	75005836	75005836	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gactccatgatctgatccatGtcacccttgaagtccagata	7	12	2	4			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	10	75005836	75005836	G	C	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.420	p.D140E	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	192	1	0.52	61	17	21.79	-	-	-	C	75005836	G	C	75005836	3	2	308	1	0	0	0	0	1	0	0	0	4691	1368	48	4	374	4	DNAJC9	10	75005836	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	48569472	75005836	60528911	42	34074										
ZMIZ1	0	genome.wustl.edu	37	chr10	81058277	81058277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	acctgtcccccagccaagacGtcaaaccacccttcccgcct	5	21	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	10	81058277	81058277	G	A	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.1606	p.V536I	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	145	0	0	18	22	55	-	-	-	A	81058277	G	A	81058277	3	1	308	1	0	0	0	0	1	0	0	0	17792	1145	40	1	1648	1	ZMIZ1	10	81058277	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	6052441	81058277	54476470	43	34075										
KAZALD1	0	genome.wustl.edu	37	chr10	102824287	102824287	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ggaccccagaggtttgaggtGactggctggctgcagatcca	15	10	0	4			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	10	102824287	102824287	G	T	SNP	KAZALD1	ENST00000370200	human	ensembl	69_37n	1	known	silent	c.702	p.V234	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	KAZALD1	HGNC	ENSG00000107821	79	0	0	27	4	12.9	-	-	-	T	102824287	G	T	102824287	2	4	308	1	0	0	0	0	0	0	0	1	8043	1277	45	2		2	KAZALD1	10	102824287	Silent	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	21766010	102824287	32710460	44	34076										
PPP2R2D	0	genome.wustl.edu	37	chr10	133748053	133748053	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gttgttatttttcagcgtgaAcaagaggtcagtaattttca	9	5	3	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	10	133748053	133748053	A	T	SNP	PPP2R2D	ENST00000455566	human	ensembl	69_37n	1	known	missense	c.99	p.E33D	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2D	HGNC	ENSG00000175470	162	0	0	83	22	20.95	-	-	-	T	133748053	A	T	133748053	3	4	308	1	0	0	0	0	1	0	0	0	12464	43	2	5	96	5	PPP2R2D	10	133748053	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	30923766	133748053	1786694	45	34077										
LGR4	0	genome.wustl.edu	37	chr11	27406951	27406951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gtcatccagccacagatgccGtaactgaacaagtccttcaa	7	13	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	27406951	27406951	G	A	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	missense	c.466	p.R156W	0.995	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	140	0	0	70	9	11.39	-	-	-	A	27406951	G	A	27406951	3	1	308	1	0	0	0	0	1	0	0	0	8811	1144	40	1	2445	1	LGR4	11	27406951	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		27406951	107599565	46	34078										
F2	0	genome.wustl.edu	37	chr11	46750993	46750993	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aacctgaaggagacgtggacAgccaacgttggtaaggggca	15	8	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	46750993	46750993	A	T	SNP	F2	ENST00000311907	human	ensembl	69_37n	1	known	silent	c.1536	p.T512	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	73	0	0	14	6	30	-	-	-	T	46750993	A	T	46750993	2	4	308	1	0	0	0	0	0	0	0	1	5379	175	7	5		5	F2	11	46750993	Silent	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	19344042	46750993	88255523	47	34079										
FAM111B	0	genome.wustl.edu	37	chr11	58893517	58893517	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	acttgtttctctgatgggtcCtcaggctccccagtgtttaa	9	11	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	58893517	58893517	C	G	SNP	FAM111B	ENST00000343597	human	ensembl	69_37n	1	known	silent	c.1947	p.S649	0.248	superfamily_Pept_cys/ser_Trypsin-like	superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111B	HGNC	ENSG00000189057	196	0	0	118	32	21.33	-	-	-	G	58893517	C	G	58893517	2	3	308	1	0	0	0	0	0	0	0	1	5440	668	24	4		4	FAM111B	11	58893517	Silent	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	12142524	58893517	76112999	48	34080										
TYR	0	genome.wustl.edu	37	chr11	88911483	88911483	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gagacgactcttggtgagaaGaaacatcttcgatttgagtg	12	6	2	4			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	88911483	88911483	G	T	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	missense	c.362	p.R121I	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	76	0	0	57	7	10.94	-	-	-	T	88911483	G	T	88911483	3	4	308	1	0	0	0	0	1	0	0	0	16910	942	33	2	364	2	TYR	11	88911483	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	30017966	88911483	46095033	49	34081										
MAML2	0	genome.wustl.edu	37	chr11	95825480	95825480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tctgggaaggcaaaacagaaGgcatctgctggttcgcttga	13	8	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	95825480	95825480	G	A	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	missense	c.1715	p.P572L	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	288	0	0	150	31	17.13	-	-	-	A	95825480	G	A	95825480	3	1	308	1	0	0	0	0	1	0	0	0	9277	1000	35	4	1771	4	MAML2	11	95825480	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	6913997	95825480	39181036	50	34082										
DIXDC1	0	genome.wustl.edu	37	chr11	111857608	111857608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tattcagattataatccaaaGtcgtctggatcagagtatgg	9	6	3	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	111857608	111857608	G	T	SNP	DIXDC1	ENST00000440460	human	ensembl	69_37n	1	known	missense	c.1019	p.S340I	1.000	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764	216	0	0	233	47	16.79	-	-	-	T	111857608	G	T	111857608	3	4	308	1	0	0	0	0	1	0	0	0	4577	1029	36	4	1082	4	DIXDC1	11	111857608	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	16032128	111857608	23148908	51	34083										
GLB1L2	0	genome.wustl.edu	37	chr11	134238554	134238554	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gcagaggttttgaaaaccgtGtctgccattgtggacgccgg	14	9	1	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	11	134238554	134238554	G	T	SNP	GLB1L2	ENST00000525089	human	ensembl	69_37n	1	putative	missense	c.721	p.V241F	0.724	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLB1L2	HGNC	ENSG00000149328	93	0	0	33	5	13.16	-	-	-	T	134238554	G	T	134238554	3	4	308	1	0	0	0	0	1	0	0	0	6481	1364	48	4	944	4	GLB1L2	11	134238554	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	22380946	134238554	767962	52	34084										
VWF	0	genome.wustl.edu	37	chr12	6078528	6078528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cactcattgatgaggcagggGttctccggggaggcccactg	15	11	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	12	6078528	6078528	G	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.7578	p.N2526K	0.993	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	53	0	0	12	16	57.14	-	-	-	T	6078528	G	T	6078528	3	4	308	1	0	0	0	0	1	0	0	0	17343	1252	44	4	895	4	VWF	12	6078528	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		6078528	127773367	53	34085										
KATNAL1	0	genome.wustl.edu	37	chr13	30854326	30854326	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aagtgctgacaatacttttaActtgttcatattcctccaat	4	9	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	13	30854326	30854326	A	T	SNP	KATNAL1	ENST00000380615	human	ensembl	69_37n	-1	known	missense	c.197	p.V66D	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	86	0	0	119	133	52.78	-	-	-	T	30854326	A	T	30854326	3	4	308	1	0	0	0	0	1	0	0	0	8039	43	2	5	1311	5	KATNAL1	13	30854326	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09		30854326	84315552	54	34086										
KL	0	genome.wustl.edu	37	chr13	33635059	33635059	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agtcccaggtgaaccacaccAtcctgcagtactatcgctgc	8	15	0	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	13	33635059	33635059	A	G	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	missense	c.1843	p.I615V	0.075	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	125	0	0	10	24	70.59	-	-	-	G	33635059	A	G	33635059	3	3	308	1	0	0	0	0	1	0	0	0	8384	217	8	5	1857	5	KL	13	33635059	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	2780733	33635059	81534819	55	34087										
TSC22D1	0	genome.wustl.edu	37	chr13	45148403	45148403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cctgagaatatggtagctggGgttgagccaaactggaaatg	14	6	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	13	45148403	45148403	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.1808	p.P603L	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	173	0	0	37	11	22.92	-	-	-	A	45148403	G	A	45148403	3	1	308	1	0	0	0	0	1	0	0	0	16703	1232	43	4	1554	4	TSC22D1	13	45148403	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	11513344	45148403	70021475	56	34088										
OR4K15	0	genome.wustl.edu	37	chr14	20444111	20444111	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cctagtttccatggcctatgAccgttatgttgctatatgca	8	10	0	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	14	20444111	20444111	A	T	SNP	OR4K15	ENST00000305051	human	ensembl	69_37n	1	known	missense	c.434	p.D145V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488	194	0	0	71	62	46.62	-	-	-	T	20444111	A	T	20444111	3	4	308	1	0	0	0	0	1	0	0	0	11143	275	10	5	436	5	OR4K15	14	20444111	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09		20444111	86905429	57	34089										
TEP1	0	genome.wustl.edu	37	chr14	20873681	20873681	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aatggcagccagggtggggtCagatgtattgttcatgttta	14	5	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	14	20873681	20873681	C	T	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.799	p.D267N	0.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	269	0	0	142	32	18.39	-	-	-	T	20873681	C	T	20873681	3	4	308	1	0	0	0	0	1	0	0	0	15854	826	29	2	7292	2	TEP1	14	20873681	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	429570	20873681	86475859	58	34090										
SPTB	0	genome.wustl.edu	37	chr14	65271779	65271779	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cgagttcacccatttcgtgaAggtctttttctgaacaactt	7	10	3	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	14	65271779	65271779	A	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.178	p.F60I	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	159	0	0	76	24	24	-	-	-	T	65271779	A	T	65271779	3	4	308	1	0	0	0	0	1	0	0	0	15209	72	3	5	7013	5	SPTB	14	65271779	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	44398098	65271779	42077761	59	34091										
RASGRF1	0	genome.wustl.edu	37	chr15	79291119	79291119	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agacacgattggtggctgctCtgcggatcacaaactccttg	11	11	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	15	79291119	79291119	C	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.2843	p.R948I	0.999	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	144	0	0	26	35	57.38	-	-	-	A	79291119	C	A	79291119	3	1	308	1	0	0	0	0	1	0	0	0	13155	913	32	2	1018	2	RASGRF1	15	79291119	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		79291119	23240273	60	34092										
FANCI	0	genome.wustl.edu	37	chr15	89849398	89849398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aaggacttgtgcaaaatgtaCaccacacttacagcccttgt	7	11	0	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	15	89849398	89849398	C	T	SNP	FANCI	ENST00000561894	human	ensembl	69_37n	1	putative	missense	c.2806	p.H936Y	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FANCI	HGNC	ENSG00000140525	118	1	0.84	94	15	13.76	-	-	-	T	89849398	C	T	89849398	3	4	308	1	0	0	0	0	1	0	0	0	5715	489	17	4	3632	4	FANCI	15	89849398	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	10558279	89849398	12681994	61	34093										
DNAH3	0	genome.wustl.edu	37	chr16	20944829	20944829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cactgtttcttgtggggttaCctggaagaataaaaagctat	10	6	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	16	20944829	20944829	C	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.11998	p.V4000L	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	154	0	0	142	17	10.69	-	-	-	A	20944829	C	A	20944829	3	1	308	1	0	0	0	0	1	0	0	0	4639	521	18	4	355	4	DNAH3	16	20944829	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		20944829	69409924	62	34094										
ITGAL	0	genome.wustl.edu	37	chr16	30528336	30528336	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	acgaccacaacatacccaccCtggaggctgtggttggggtg	13	12	0	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	16	30528336	30528336	C	A	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	missense	c.2905	p.L969M	0.897	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	49	0	0	13	5	27.78	-	-	-	A	30528336	C	A	30528336	3	1	308	1	0	0	0	0	1	0	0	0	7940	680	24	4	3007	4	ITGAL	16	30528336	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	9583507	30528336	59826417	63	34095										
TEPP	0	genome.wustl.edu	37	chr16	58021301	58021301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cccctacttctctccacagtCgtgtcaactacctgaccccc	4	20	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	16	58021301	58021301	C	T	SNP	TEPP	ENST00000290871	human	ensembl	69_37n	1	known	missense	c.868	p.R290C	0.403	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648	260	0	0	98	69	41.32	-	-	-	T	58021301	C	T	58021301	3	4	308	1	0	0	0	0	1	0	0	0	15855	898	31	1	898	1	TEPP	16	58021301	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	27492965	58021301	32333452	64	34096										
PKD1L2	0	genome.wustl.edu	37	chr16	81232651	81232651	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ggttatgtcacccaaaagcaCagtgtaagtcactcctgttc	8	11	2	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	16	81232651	81232651	C	G	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.1159	p.V387L	0.148	NULL	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	150	0	0	68	20	22.73	-	-	-	G	81232651	C	G	81232651	3	3	308	1	0	0	0	0	1	0	0	0	12039	478	17	4	6437	4	PKD1L2	16	81232651	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	23211350	81232651	9122102	65	34097										
ATP2C2	0	genome.wustl.edu	37	chr16	84449123	84449123	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aactccagcacctgcttgctCgagaactggttcctggtgat	10	12	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	16	84449123	84449123	C	G	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.550	p.R184G	0.736	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	119	0	0	54	24	30.77	-	-	-	G	84449123	C	G	84449123	3	3	308	1	0	0	0	0	1	0	0	0	1148	876	31	3	576	3	ATP2C2	16	84449123	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	3216472	84449123	5905630	66	34098										
OR1A1	0	genome.wustl.edu	37	chr17	3119462	3119462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cttctactgtgacattacccCcttgctgaagttatcctgtt	6	12	1	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	3119462	3119462	C	T	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	missense	c.548	p.P183L	0.196	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	252	0	0	26	148	85.06	-	-	-	T	3119462	C	T	3119462	3	4	308	1	0	0	0	0	1	0	0	0	11022	623	22	4	550	4	OR1A1	17	3119462	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		3119462	78075748	67	34099										
TP53	0	genome.wustl.edu	37	chr17	7577110	7577110	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cgccggtctctcccaggacaGgcacaaacacgcacctcaaa	8	17	2	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	7577110	7577110	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	silent	c.828	p.A276	0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	229	0	0	17	4	19.05	-	-	-	C	7577110	G	C	7577110	2	2	308	1	0	0	0	0	0	0	0	1	16477	987	35	4		4	TP53	17	7577110	Silent	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	4457648	7577110	73618100	68	34100										
BRCA1	0	genome.wustl.edu	37	chr17	41201181	41201181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gctccttcaccacagaagcaCcacacagctgtaccatccat	5	17	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	41201181	41201181	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.5426	p.G1809V	1.000	pirsf_BRCA1,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	119	0	0	46	17	26.98	-	-	-	A	41201181	C	A	41201181	3	1	308	1	0	0	0	0	1	0	0	0	1506	507	18	4	240	4	BRCA1	17	41201181	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	33624071	41201181	39994029	69	34101										
HOXB2	0	genome.wustl.edu	37	chr17	46622059	46622059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gcagagcaggcccatcttcgGctcgcttttggctcctgggt	13	13	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	46622059	46622059	G	A	SNP	HOXB2	ENST00000330070	human	ensembl	69_37n	-1	known	missense	c.215	p.A72V	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXB2	HGNC	ENSG00000173917	50	0	0	20	7	25.93	-	-	-	A	46622059	G	A	46622059	3	1	308	1	0	0	0	0	1	0	0	0	7352	1203	42	4	863	4	HOXB2	17	46622059	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	5420878	46622059	34573151	70	34102										
HOXB3	0	genome.wustl.edu	37	chr17	46629421	46629421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agttgtttttcagcttggacGtttgcctcgactctttcatc	8	10	3	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	46629421	46629421	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	missense	c.416	p.T139M	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	159	0	0	60	28	31.82	-	-	-	A	46629421	G	A	46629421	3	1	308	1	0	0	0	0	1	0	0	0	7353	1145	40	1	887	1	HOXB3	17	46629421	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	7362	46629421	34565789	71	34103										
KCNH6	0	genome.wustl.edu	37	chr17	61619620	61619620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aggaaagaatgacatctttgGggaacccgtcagcctccatg	11	10	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	61619620	61619620	G	T	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.1973	p.G658V	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	76	0	0	3	15	83.33	-	-	-	T	61619620	G	T	61619620	3	4	308	1	0	0	0	0	1	0	0	0	8090	1232	43	4	2007	4	KCNH6	17	61619620	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	14990199	61619620	19575590	72	34104										
SECTM1	0	genome.wustl.edu	37	chr17	80282641	80282641	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ctcattgaagatggcgctctCctgcccgtgggcacgcagct	12	14	2	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	17	80282641	80282641	C	A	SNP	SECTM1	ENST00000269389	human	ensembl	69_37n	-1	known	nonsense	c.220	p.E74*	0.000	NULL	NULL	-	no_errors	SECTM1	HGNC	ENSG00000141574	134	0	0	36	14	28	-	-	-	A	80282641	C	A	80282641	4	1	308	1	0	0	0	0	0	1	0	0	14096	864	30	2	538	2	SECTM1	17	80282641	Nonsense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	18663021	80282641	912569	73	34105										
EPB41L3	0	genome.wustl.edu	37	chr18	5397152	5397152	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agcagcggctgtctcttcctGttccaggacagctttagcga	11	12	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	18	5397152	5397152	G	C	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.2746	p.Q916E	0.733	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	103	1	0.96	17	27	61.36	-	-	-	C	5397152	G	C	5397152	3	2	308	1	0	0	0	0	1	0	0	0	5191	1386	48	4	537	4	EPB41L3	18	5397152	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		5397152	72680096	74	34106										
PIK3C3	0	genome.wustl.edu	37	chr18	39542488	39542488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tgaaactaccagtaaaatacCctgacctgcccaggaatgcc	7	13	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	18	39542488	39542488	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.292	p.P98S	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	127	0	0	43	12	21.82	-	-	-	T	39542488	C	T	39542488	3	4	308	1	0	0	0	0	1	0	0	0	11986	623	22	4	302	4	PIK3C3	18	39542488	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	34145336	39542488	38534760	75	34107										
C19orf70	0	genome.wustl.edu	37	chr19	5679407	5679407	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aatctttggaggggctgggaGctgggaaaaagagatgggca	18	4	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	5679407	5679407	G	C	SNP	C19orf70	ENST00000309324	human	ensembl	69_37n	-1	known	missense	c.208	p.L70V	1.000	NULL	NULL	-	no_errors	C19orf70	HGNC	ENSG00000174917	118	0	0	33	12	26.67	-	-	-	C	5679407	G	C	5679407	3	2	308	1	0	0	0	0	1	0	0	0	1965	985	34	4	156	4	C19orf70	19	5679407	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		5679407	53449576	76	34108										
DOCK6	0	genome.wustl.edu	37	chr19	11348396	11348396	+	Frame_Shift_Del	DEL	T	T	-													0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agaaggtgaacagcaggtgaTggttctctgtcacgcaggct							TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	11348396	11348396	T	-	DEL	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	frame_shift_del	c.1892	p.H631fs	1.000	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	47	0	0	11	2	15.38	-	-	-	-	11348396	T	-	11348396	7	5	308	1	0	1	0	1	0	0	0	0	4726	1464	51	0	4379	0	DOCK6	19	11348396	Frame_Shift_Del	DEL	T	TCGA-AN-A0XU-01A-11D-A10G-09	5668989	11348396	47780587	77	34109										
DAND5	0	genome.wustl.edu	37	chr19	13084353	13084353	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gcaagcgttgggcacccgtgGtcctgtggtgtctcactggc	15	12	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	13084353	13084353	G	C	SNP	DAND5	ENST00000317060	human	ensembl	69_37n	1	known	missense	c.475	p.V159L	0.014	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284	199	1	0.5	62	9	12.68	-	-	-	C	13084353	G	C	13084353	3	2	308	1	0	0	0	0	1	0	0	0	4262	1261	44	4	481	4	DAND5	19	13084353	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	1735957	13084353	46044630	78	34110										
LGI4	0	genome.wustl.edu	37	chr19	35625006	35625006	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tgactcccgtcctgacgagtGagctggggatgtgggcagtg	17	9	0	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	35625006	35625006	G	A	SNP	LGI4	ENST00000310123	human	ensembl	69_37n	-1	known	missense	c.173	p.S58L	0.998	NULL	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI4	HGNC	ENSG00000153902	93	0	0	34	4	10.53	-	-	-	A	35625006	G	A	35625006	3	1	308	1	0	0	0	0	1	0	0	0	8809	1294	45	2	1472	2	LGI4	19	35625006	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	22540653	35625006	23503977	79	34111										
IGFL2	0	genome.wustl.edu	37	chr19	46663943	46663943	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	caagatctacaaccccttggAgcagtgctgttacaatgacg	9	11	1	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	46663943	46663943	A	T	SNP	IGFL2	ENST00000434646	human	ensembl	69_37n	1	known	missense	c.179	p.E60V	0.009	NULL	NULL	-	no_errors	IGFL2	HGNC	ENSG00000204866	90	0	0	26	7	21.21	-	-	-	T	46663943	A	T	46663943	3	4	308	1	0	0	0	0	1	0	0	0	7641	304	11	5	212	5	IGFL2	19	46663943	Missense_Mutation	SNP	A	TCGA-AN-A0XU-01A-11D-A10G-09	11038937	46663943	12465040	80	34112										
PNMAL1	0	genome.wustl.edu	37	chr19	46973059	46973059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	agaggttgaggctgttgcctCggcaggctgctggccccgag	17	11	0	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	46973059	46973059	C	T	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	missense	c.1234	p.E412K	0.007	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	90	0	0	3	27	90	-	-	-	T	46973059	C	T	46973059	3	4	308	1	0	0	0	0	1	0	0	0	12231	893	31	1	115	1	PNMAL1	19	46973059	Missense_Mutation	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09	309116	46973059	12155924	81	34113										
ZNF543	0	genome.wustl.edu	37	chr19	57839308	57839308	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	aacgtgatggtttggggtcaGatgatggtgtatgtacaaag	15	3	1	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	19	57839308	57839308	G	C	SNP	ZNF543	ENST00000321545	human	ensembl	69_37n	1	known	missense	c.478	p.D160H	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	89	0	0	38	37	49.33	-	-	-	C	57839308	G	C	57839308	3	2	308	1	0	0	0	0	1	0	0	0	18072	942	33	2	492	2	ZNF543	19	57839308	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	10866249	57839308	1289675	82	34114										
SYCP2	0	genome.wustl.edu	37	chr20	58467482	58467482	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ttttttatttataacaatatCtattggggaaaatgagaaat	6	2	1	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	20	58467482	58467482	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	splice_site	c.1928-1	e22-1	0.919	-	-	-	no_errors	SYCP2	HGNC	ENSG00000196074	78	0	0	253	52	17.05	-	-	-	A	58467482	C	A	58467482	5	1	308	1	0	0	0	0	0	0	1	0	15524	927	32	2	2753	2	SYCP2	20	58467482	Splice_Site	SNP	C	TCGA-AN-A0XU-01A-11D-A10G-09		58467482	4558038	83	34115										
DOPEY2	0	genome.wustl.edu	37	chr21	37612131	37612131	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	cggtgcggcagcccagggctGgctggtgcgtgcgctctccc	17	15	1	0			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	21	37612131	37612131	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	nonsense	c.2945	p.W982*	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	55	0	0	6	4	40	-	-	-	A	37612131	G	A	37612131	4	1	308	1	0	0	0	0	0	1	0	0	4743	1357	47	4	3011	4	DOPEY2	21	37612131	Nonsense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09		37612131	10517764	84	34116										
CSNK1E	0	genome.wustl.edu	37	chr22	38694802	38694802	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gtgactcacgaatttcagcaTgttccagtcaaagacgtagt	9	9	3	2			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	22	38694802	38694802	T	A	SNP	CSNK1E	ENST00000359867	human	ensembl	69_37n	-1	known	missense	c.874	p.M292L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923	86	0	0	32	11	25.58	-	-	-	A	38694802	T	A	38694802	3	1	308	1	0	0	0	0	1	0	0	0	3985	1464	51	5	392	5	CSNK1E	22	38694802	Missense_Mutation	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09		38694802	12609764	85	34117										
TNRC6B	0	genome.wustl.edu	37	chr22	40662003	40662003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tgacagtcataactctggccGtcggtcgtacaggcccacac	10	14	2	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	22	40662003	40662003	G	A	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.1769	p.R590H	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	84	0	0	21	13	38.24	-	-	-	A	40662003	G	A	40662003	3	1	308	1	0	0	0	0	1	0	0	0	16436	1145	40	1	1908	1	TNRC6B	22	40662003	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	1967201	40662003	10642563	86	34118										
CNKSR2	0	genome.wustl.edu	37	chrX	21627269	21627269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	tctcagtctcagtcttctcaTgaggagtttcgccaggaagt	10	10	4	1			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	X	21627269	21627269	T	G	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.2226	p.H742Q	0.999	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	97	0	0	13	15	53.57	-	-	-	G	21627269	T	G	21627269	3	3	308	1	0	0	0	0	1	0	0	0	3637	1461	51	5	2304	5	CNKSR2	23	21627269	Missense_Mutation	SNP	T	TCGA-AN-A0XU-01A-11D-A10G-09		21627269	133643291	87	34119										
PCDH19	0	genome.wustl.edu	37	chrX	99551519	99551519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	gagagctcttgaggtggaggGgggaggtgacagggctaatc	20	5	1	3			TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	X	99551519	99551519	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.3203	p.P1068H	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	167	0	0	10	29	74.36	-	-	-	T	99551519	G	T	99551519	3	4	308	1	0	0	0	0	1	0	0	0	11587	1232	43	4	247	4	PCDH19	23	99551519	Missense_Mutation	SNP	G	TCGA-AN-A0XU-01A-11D-A10G-09	77924250	99551519	55719041	88	34120										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.123595505617978	11	0.130930759268306	1.80956919557758	2.49662487945998	1.36034047919294	1	1	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537c5818-eb89-4b46-8915-2bb2b9e4545f	0c389ec9-719e-4bcb-96f2-9889efd47a4a	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	153	1	0.65	95	18	15.93	-	-	-	AA	135960147	-	AA	135960146	7	5	308	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-AN-A0XU-01A-11D-A10G-09	36408627	135960146	19310414	89	34121										
RAD54L	0	genome.wustl.edu	37	chr1	46743834	46743834	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	gacctggcagggtggaaccaCtgcactgataagtgggggct	16	9	0	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	46743834	46743834	C	A	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	1	known	missense	c.2124	p.H708Q	0.996	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	15	0	0	16	13	44.83	-	-	-	A	46743834	C	A	46743834	3	1	309	1	0	0	0	0	1	0	0	0	13076	564	20	4	2194	4	RAD54L	1	46743834	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		46743834	202506787	1	34122										
INADL	0	genome.wustl.edu	37	chr1	62274159	62274160	+	Frame_Shift_Del	DEL	AC	AC	-													0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	aatttaggttgctactttggAcacacagattgcagatgatg							TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	62274159	62274160	AC	-	DEL	INADL	ENST00000371158	human	ensembl	69_37n	1	known	frame_shift_del	c.1640_1641	p.Q549fs	0.996:0.507	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	358	0	0	280	108	27.2	-	-	-	-	62274160	AC	-	62274159	7	5	309	1	0	1	0	1	0	0	0	0	7785	275	10	0	1690	0	INADL	1	62274159	Frame_Shift_Del	DEL	AC	TCGA-AN-A0XV-01A-11D-A10G-09	15530325	62274159	186976462	2	34123										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220340879	220340879	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	agtccatctccatctctgatAcctcaaggaaacttctgtta	5	12	4	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	220340879	220340879	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.2945	p.V982A	0.019	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	246	0	0	167	73	30.42	-	-	-	G	220340879	A	G	220340879	3	3	309	1	0	0	0	0	1	0	0	0	13019	391	14	5	1280	5	RAB3GAP2	1	220340879	Missense_Mutation	SNP	A	TCGA-AN-A0XV-01A-11D-A10G-09	158066720	220340879	28909742	3	34124										
CYP26B1	0	genome.wustl.edu	37	chr2	72361955	72361955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ctcaatgaggaggtccagggCgtccaagtagtccttgccct	12	12	1	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	72361955	72361955	C	T	SNP	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	missense	c.796	p.A266T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	37	0	0	29	14	32.56	-	-	-	T	72361955	C	T	72361955	3	4	309	1	0	0	0	0	1	0	0	0	4187	768	27	1	754	1	CYP26B1	2	72361955	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		72361955	170837418	4	34125										
SLC5A7	0	genome.wustl.edu	37	chr2	108604635	108604635	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	gctttccatgtggaaggactGatagctatcatcgtgttcta	10	8	2	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	108604635	108604635	G	C	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	silent	c.24	p.L8	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	103	0	0	87	28	23.93	-	-	-	C	108604635	G	C	108604635	2	2	309	1	0	0	0	0	0	0	0	1	14759	1277	45	2		2	SLC5A7	2	108604635	Silent	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	36242680	108604635	134594738	5	34126										
PSMD1	0	genome.wustl.edu	37	chr2	231927025	231927025	+	Frame_Shift_Del	DEL	G	G	-													0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	gggcagaaatttccgagtccGtagacaaaatgtaagaaatt							TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	231927025	231927025	G	-	DEL	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	frame_shift_del	c.124	p.V42fs	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	202	0	0	148	20	11.76	-	-	-	-	231927025	G	-	231927025	7	5	309	1	0	1	0	1	0	0	0	0	12772	1145	40	0	134	0	PSMD1	2	231927025	Frame_Shift_Del	DEL	G	TCGA-AN-A0XV-01A-11D-A10G-09	123322390	231927025	11272348	6	34127										
FGD5	0	genome.wustl.edu	37	chr3	14861440	14861440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	aggccacgggtgtcacaggtGgggaacaggttgacctcagt	16	9	2	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	3	14861440	14861440	G	A	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.862	p.G288R	0.027	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	23	0	0	13	7	35	-	-	-	A	14861440	G	A	14861440	3	1	309	1	0	0	0	0	1	0	0	0	5882	1348	47	4	864	4	FGD5	3	14861440	Missense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09		14861440	183160990	7	34128										
IL17RD	0	genome.wustl.edu	37	chr3	57139978	57139978	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	aagttgtgcggtgcatggtcGaaggacacctgcatgtccga	14	9	0	0			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	3	57139978	57139978	G	A	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	silent	c.654	p.F218	0.941	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	79	0	0	50	18	26.47	-	-	-	A	57139978	G	A	57139978	2	1	309	1	0	0	0	0	0	0	0	1	7696	1049	37	1		1	IL17RD	3	57139978	Silent	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	42278538	57139978	140882452	8	34129										
DHX15	0	genome.wustl.edu	37	chr4	24542562	24542562	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	agaacgcaaaatctcaggatAggtgttatcctagcaaagaa	9	7	1	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	4	24542562	24542562	A	T	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.1495	p.Y499N	1.000	pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	147	0	0	133	16	10.74	-	-	-	T	24542562	A	T	24542562	3	4	309	1	0	0	0	0	1	0	0	0	4537	420	15	5	916	5	DHX15	4	24542562	Missense_Mutation	SNP	A	TCGA-AN-A0XV-01A-11D-A10G-09		24542562	166611714	9	34130										
LARP1B	0	genome.wustl.edu	37	chr4	129043387	129043387	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ttctactgatgctttgttttGattgtatgttgctgtttata	8	4	1	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	4	129043387	129043387	G	C	SNP	LARP1B	ENST00000507377	human	ensembl	69_37n	1	known	missense	c.1473	p.L491F	0.001	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LARP1B	HGNC	ENSG00000138709	65	0	0	46	13	22.03	-	-	-	C	129043387	G	C	129043387	3	2	309	1	0	0	0	0	1	0	0	0	8683	1285	45	2	1691	2	LARP1B	4	129043387	Missense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	104500825	129043387	62110889	10	34131										
FASTKD3	0	genome.wustl.edu	37	chr5	7867647	7867647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	cacatgcaacagaatcagagCttgcaaagcagtcactaaac	7	11	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	7867647	7867647	C	T	SNP	FASTKD3	ENST00000264669	human	ensembl	69_37n	-1	known	missense	c.550	p.A184T	0.993	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279	66	0	0	46	8	14.81	-	-	-	T	7867647	C	T	7867647	3	4	309	1	0	0	0	0	1	0	0	0	5733	797	28	4	1462	4	FASTKD3	5	7867647	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		7867647	173047613	11	34132										
HEATR7B2	0	genome.wustl.edu	37	chr5	41052602	41052602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	cgttgcaaactgggagaagaCataatcaatcaatggccatc	9	9	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	41052602	41052602	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1195	p.V399I	0.928	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	106	0	0	78	32	29.09	-	-	-	T	41052602	C	T	41052602	3	4	309	1	0	0	0	0	1	0	0	0	7086	478	17	4	3686	4	HEATR7B2	5	41052602	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09	33184955	41052602	139862658	12	34133										
CEP120	0	genome.wustl.edu	37	chr5	122685675	122685675	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	tatatccaacaattcttgtcGctcggtttttactgtatctt	5	9	2	0			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	122685675	122685675	G	A	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	nonsense	c.2689	p.R897*	0.990	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	251	0	0	194	76	28.15	-	-	-	A	122685675	G	A	122685675	4	1	309	1	0	0	0	0	0	1	0	0	3275	1095	38	1	279	1	CEP120	5	122685675	Nonsense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	81633073	122685675	58229585	13	34134										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801090	140801090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ccgggaggagctctgtgagaCggtgtcctcctgttttttaa	13	9	1	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	140801090	140801090	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.296	p.T99M	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	11	0	0	10	4	28.57	-	-	-	T	140801090	C	T	140801090	3	4	309	1	0	0	0	0	1	0	0	0	11625	536	19	1	298	1	PCDHGA11	5	140801090	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09	18115415	140801090	40114170	14	34135										
ODZ2	0	genome.wustl.edu	37	chr5	167545418	167545418	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	cagtgcatcgatccttcctgCgggggccacggctcctgcat	12	15	0	0			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	167545418	167545418	C	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	silent	c.1935	p.C645	1.000	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	16	0	0	15	4	21.05	-	-	-	T	167545418	C	T	167545418	2	4	309	1	0	0	0	0	0	0	0	1	10908	776	27	1		1	ODZ2	5	167545418	Silent	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09	26744328	167545418	13369842	15	34136										
GMDS	0	genome.wustl.edu	37	chr6	2124961	2124961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ggaactcagccaggtaggaaCcatcctggggagaaagaaaa	13	8	1	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	2124961	2124961	C	G	SNP	GMDS	ENST00000380815	human	ensembl	69_37n	-1	known	missense	c.107	p.G36A	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699	67	0	0	55	20	26.67	-	-	-	G	2124961	C	G	2124961	3	3	309	1	0	0	0	0	1	0	0	0	6538	507	18	4	1051	4	GMDS	6	2124961	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		2124961	168990106	16	34137										
OR2B3	0	genome.wustl.edu	37	chr6	29055016	29055016	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ttttggggagctctcattttCccaattcatgatgactcact	7	10	3	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	29055016	29055016	C	A	SNP	OR2B3	ENST00000377173	human	ensembl	69_37n	-1	known	nonsense	c.10	p.E4*	0.329	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703	86	0	0	62	22	26.19	-	-	-	A	29055016	C	A	29055016	4	1	309	1	0	0	0	0	0	1	0	0	11063	864	30	2	935	2	OR2B3	6	29055016	Nonsense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09	26930055	29055016	142060051	17	34138										
HACE1	0	genome.wustl.edu	37	chr6	105219210	105219210	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	tatctaaaatccattgcaaaTttttcgcatattctggatca	4	8	3	0			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	105219210	105219210	T	A	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	missense	c.2069	p.N690I	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	169	0	0	110	35	24.14	-	-	-	A	105219210	T	A	105219210	3	1	309	1	0	0	0	0	1	0	0	0	6991	1493	52	5	684	5	HACE1	6	105219210	Missense_Mutation	SNP	T	TCGA-AN-A0XV-01A-11D-A10G-09	76164194	105219210	65895857	18	34139										
OPRM1	0	genome.wustl.edu	37	chr6	154412132	154412132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ctctcatccaacctggtactGggaaaacctgctgaagatct	8	12	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	154412132	154412132	G	T	SNP	OPRM1	ENST00000434900	human	ensembl	69_37n	1	known	missense	c.968	p.W323L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	224	0	0	141	61	30.2	-	-	-	T	154412132	G	T	154412132	3	4	309	1	0	0	0	0	1	0	0	0	10960	1357	47	4	1033	4	OPRM1	6	154412132	Missense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	49192922	154412132	16702935	19	34140										
NFE2L3	0	genome.wustl.edu	37	chr7	26224284	26224284	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	catgaggccatcttgctttgTcccaacaatacatttagaag	7	10	1	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	7	26224284	26224284	T	C	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	silent	c.966	p.C322	0.004	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	113	0	0	58	10	14.49	-	-	-	C	26224284	T	C	26224284	2	2	309	1	0	0	0	0	0	0	0	1	10441	1673	58	5		5	NFE2L3	7	26224284	Silent	SNP	T	TCGA-AN-A0XV-01A-11D-A10G-09		26224284	132914379	20	34141										
MLL3	0	genome.wustl.edu	37	chr7	151945474	151945474	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	tgactaattttggaggccttGattcttctctggataccact	8	9	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	7	151945474	151945474	G	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.2045	p.S682*	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	171	0	0	113	51	31.1	-	-	-	C	151945474	G	C	151945474	4	2	309	1	0	0	0	0	0	1	0	0	9693	1294	45	2	12874	2	MLL3	7	151945474	Nonsense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09	125721190	151945474	7193189	21	34142										
ANKRD16	0	genome.wustl.edu	37	chr10	5930026	5930026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	tgtgcaggccatcatcagagGagtcctaaggccaaccagga	12	11	2	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	10	5930026	5930026	G	A	SNP	ANKRD16	ENST00000380092	human	ensembl	69_37n	-1	known	missense	c.319	p.P107S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD16	HGNC	ENSG00000134461	33	0	0	24	14	36.84	-	-	-	A	5930026	G	A	5930026	3	1	309	1	0	0	0	0	1	0	0	0	645	1174	41	2	790	2	ANKRD16	10	5930026	Missense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09		5930026	129604721	22	34143										
BARX2	0	genome.wustl.edu	37	chr11	129306679	129306679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	gcgggcatatccgctcctctCggtgatcacccgccagccca	10	18	2	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	11	129306679	129306679	C	T	SNP	BARX2	ENST00000281437	human	ensembl	69_37n	1	known	missense	c.221	p.S74L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	BARX2	HGNC	ENSG00000043039	14	0	0	9	6	40	-	-	-	T	129306679	C	T	129306679	3	4	309	1	0	0	0	0	1	0	0	0	1320	893	31	1	227	1	BARX2	11	129306679	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		129306679	5699837	23	34144										
MLEC	0	genome.wustl.edu	37	chr12	121132627	121132627	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ttcttttcttatcctggaagGtatttgatgtacgattgaat	8	5	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	12	121132627	121132627	G	T	SNP	MLEC	ENST00000228506	human	ensembl	69_37n	1	known	missense	c.415	p.V139L	1.000	pfam_Malectin	pfam_Malectin	-	no_errors	MLEC	HGNC	ENSG00000110917	175	1	0.57	99	44	30.77	-	-	-	T	121132627	G	T	121132627	3	4	309	1	0	0	0	0	1	0	0	0	9684	1275	44	4	425	4	MLEC	12	121132627	Missense_Mutation	SNP	G	TCGA-AN-A0XV-01A-11D-A10G-09		121132627	12719268	24	34145										
NEK5	0	genome.wustl.edu	37	chr13	52661583	52661583	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ttggctcggcagaagatggaCgaagaccctatttattgaat	11	7	0	4			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	13	52661583	52661583	C	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.1283	p.R428L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	220	0	0	58	53	47.75	-	-	-	A	52661583	C	A	52661583	3	1	309	1	0	0	0	0	1	0	0	0	10399	536	19	3	875	3	NEK5	13	52661583	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		52661583	62508295	25	34146										
ITFG1	0	genome.wustl.edu	37	chr16	47252799	47252799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ctgatccatttttcagatacCcatttgcatctacagttgta	5	10	2	2			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	16	47252799	47252799	C	A	SNP	ITFG1	ENST00000320640	human	ensembl	69_37n	-1	known	missense	c.1433	p.G478V	0.998	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636	316	0	0	185	90	32.61	-	-	-	A	47252799	C	A	47252799	3	1	309	1	0	0	0	0	1	0	0	0	7923	623	22	4	425	4	ITFG1	16	47252799	Missense_Mutation	SNP	C	TCGA-AN-A0XV-01A-11D-A10G-09		47252799	43101954	26	34147										
UHRF1	0	genome.wustl.edu	37	chr19	4956762	4956762	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	tggaggagacgttccagtgtAtctgctgtcaggagctggtg	16	7	2	1			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	19	4956762	4956762	A	G	SNP	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	46	0	0	46	21	31.34	-	-	-	G	4956762	A	G	4956762	1	3	309	0	1	0	0	0	0	0	0	0	17064	449	16	5		5	UHRF1	19	4956762	RNA	SNP	A	TCGA-AN-A0XV-01A-11D-A10G-09		4956762	54172221	27	34148										
FASTKD5	0	genome.wustl.edu	37	chr20	3127664	3127664	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	ctgcatgcaggctgcggggcAcaggccagccatctccatgg	14	14	1	0			TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	20	3127664	3127664	A	C	SNP	FASTKD5	ENST00000380266	human	ensembl	69_37n	-1	known	missense	c.2053	p.C685G	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251	44	0	0	20	17	45.95	-	-	-	C	3127664	A	C	3127664	3	2	309	1	0	0	0	0	1	0	0	0	5734	159	6	5	245	5	FASTKD5	20	3127664	Missense_Mutation	SNP	A	TCGA-AN-A0XV-01A-11D-A10G-09		3127664	59897856	28	34149										
NCAM2	0	genome.wustl.edu	37	chr21	22782691	22782691	+	Frame_Shift_Del	DEL	A	A	-													0.103448275862069	3	0.683080497494884	1.44078947368421	5.04276315789474	0	0.1	0.5224358974359	0	aaatcgaatccaccagcatcAattcactggagaagagataa							TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	21	22782691	22782691	A	-	DEL	NCAM2	ENST00000400546	human	ensembl	69_37n	1	known	frame_shift_del	c.1293	p.I432fs	0.938	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	133	0	0	119	36	22.93	-	-	-	-	22782691	A	-	22782691	7	5	309	1	0	1	0	1	0	0	0	0	10275	117	5	0	1331	0	NCAM2	21	22782691	Frame_Shift_Del	DEL	A	TCGA-AN-A0XV-01A-11D-A10G-09		22782691	25347204	29	34150										
CNKSR1	0	genome.wustl.edu	37	chr1	26510895	26510895	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcctccctccctgacagactCtgcctcccttggccctgagc	7	20	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	26510895	26510895	C	T	SNP	CNKSR1	ENST00000374253	human	ensembl	69_37n	1	known	missense	c.1025	p.S342F	0.697	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	67	0	0	34	9	20.93	-	-	-	T	26510895	C	T	26510895	3	4	310	1	0	0	0	0	1	0	0	0	3636	913	32	2	1050	2	CNKSR1	1	26510895	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		26510895	222739726	1	34151			1	60		4	4	6982	C		1.589921e-05
CNKSR1	0	genome.wustl.edu	37	chr1	26513679	26513679	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gatgagaaggctgagggcctCatcaatgtctccaactatag	11	9	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	26513679	26513679	C	T	SNP	CNKSR1	ENST00000374253	human	ensembl	69_37n	1	known	silent	c.1350	p.L450	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	127	0	0	82	16	16.33	-	-	-	T	26513679	C	T	26513679	2	4	310	1	0	0	0	0	0	0	0	1	3636	813	29	2		2	CNKSR1	1	26513679	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	2784	26513679	222736942	2	34152			1	60		4	4	6982	C		1.589921e-05
CNKSR1	0	genome.wustl.edu	37	chr1	26514740	26514740	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cataggtgggtgcgtcatctCattacctgcatctccaagta	9	11	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	26514740	26514740	C	G	SNP	CNKSR1	ENST00000374253	human	ensembl	69_37n	1	known	silent	c.1491	p.L497	0.981	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	61	0	0	34	9	20.93	-	-	-	G	26514740	C	G	26514740	2	3	310	1	0	0	0	0	0	0	0	1	3636	813	29	2		2	CNKSR1	1	26514740	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1061	26514740	222735881	3	34153			1	60		4	4	6982	C		1.589921e-05
CATSPER4	0	genome.wustl.edu	37	chr1	26517876	26517876	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctggccctgctgctggtgatCaatgccatcaccatcgctct	9	15	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	26517876	26517876	C	T	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	silent	c.312	p.I104	0.094	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	31	0	0	11	8	42.11	-	-	-	T	26517876	C	T	26517876	2	4	310	1	0	0	0	0	0	0	0	1	2715	816	29	2		2	CATSPER4	1	26517876	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3136	26517876	222732745	4	34154			1	60		4	4	6982	C		1.589921e-05
IL23R	0	genome.wustl.edu	37	chr1	67666482	67666482	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tattaacatctccactgattCattacaaggtggcaagaagt	7	8	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	67666482	67666482	C	G	SNP	IL23R	ENST00000347310	human	ensembl	69_37n	1	known	nonsense	c.554	p.S185*	0.005	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594	123	0	0	77	14	15.38	-	-	-	G	67666482	C	G	67666482	4	3	310	1	0	0	0	0	0	1	0	0	7730	838	29	2	568	2	IL23R	1	67666482	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	41148606	67666482	181584139	5	34155										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112999921	112999921	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccactccattgaccaaaactCattcccaggcagcctctttg	5	16	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	112999921	112999921	C	T	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	missense	c.1807	p.H603Y	0.912	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	58	0	0	30	15	33.33	-	-	-	T	112999921	C	T	112999921	3	4	310	1	0	0	0	0	1	0	0	0	4078	826	29	2	1821	2	CTTNBP2NL	1	112999921	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	45333439	112999921	136250700	6	34156										
SYCP1	0	genome.wustl.edu	37	chr1	115420781	115420781	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aagatttaacatttctgctaGaggaatccagagataaagtt	8	5	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	115420781	115420781	G	C	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.868	p.E290Q	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	150	0	0	78	43	35.54	-	-	-	C	115420781	G	C	115420781	3	2	310	1	0	0	0	0	1	0	0	0	15523	943	33	2	910	2	SYCP1	1	115420781	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2420860	115420781	133829840	7	34157										
WDR3	0	genome.wustl.edu	37	chr1	118485115	118485115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aggttaatgttgaaatgagtCtgcaagatgaaatccagcgg	12	5	1	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	118485115	118485115	C	G	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	1	known	missense	c.1045	p.L349V	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	201	0	0	94	57	37.75	-	-	-	G	118485115	C	G	118485115	3	3	310	1	0	0	0	0	1	0	0	0	17382	912	32	2	1079	2	WDR3	1	118485115	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3064334	118485115	130765506	8	34158										
SETDB1	0	genome.wustl.edu	37	chr1	150933151	150933151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aacttcaaagaaggatatgaGagtgatgccccctgttcctc	9	10	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	150933151	150933151	G	C	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.2613	p.E871D	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	79	0	0	69	8	10.39	-	-	-	C	150933151	G	C	150933151	3	2	310	1	0	0	0	0	1	0	0	0	14226	933	33	2	2671	2	SETDB1	1	150933151	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	32448036	150933151	98317470	9	34159										
THEM5	0	genome.wustl.edu	37	chr1	151820278	151820278	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atgcaggacatgtaaagcttCtggtcctcaatcttgtccag	9	10	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	151820278	151820278	C	G	SNP	THEM5	ENST00000368817	human	ensembl	69_37n	-1	known	missense	c.636	p.Q212H	1.000	pfam_Thioestr_supf	pfam_Thioestr_supf	-	no_errors	THEM5	HGNC	ENSG00000196407	95	0	0	65	22	25.29	-	-	-	G	151820278	C	G	151820278	3	3	310	1	0	0	0	0	1	0	0	0	15954	912	32	2	115	2	THEM5	1	151820278	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	887127	151820278	97430343	10	34160										
S100A13	0	genome.wustl.edu	37	chr1	153598799	153598799	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cccagacttctgcctaccttGagcagatggggcaactgctg	11	13	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	153598799	153598799	G	C	SNP	S100A13	ENST00000339556	human	ensembl	69_37n	-1	known	silent	c.150	p.L50	1.000	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub	-	no_errors	S100A13	HGNC	ENSG00000189171	37	0	0	31	9	22.5	-	-	-	C	153598799	G	C	153598799	2	2	310	1	0	0	0	0	0	0	0	1	13861	1277	45	2		2	S100A13	1	153598799	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1778521	153598799	95651822	11	34161										
NUP210L	0	genome.wustl.edu	37	chr1	154072563	154072563	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgttaccagagtatggccaaGagatttagctgcgatatgtg	12	6	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	154072563	154072563	G	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.1876	p.L626V	0.001	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	156	0	0	132	36	21.43	-	-	-	C	154072563	G	C	154072563	3	2	310	1	0	0	0	0	1	0	0	0	10834	942	33	2	3898	2	NUP210L	1	154072563	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	473764	154072563	95178058	12	34162										
ETV3	0	genome.wustl.edu	37	chr1	157106111	157106111	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctgctcacctccacctccttCtggcttttccacgatgctac	5	18	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	157106111	157106111	C	T	SNP	ETV3	ENST00000368192	human	ensembl	69_37n	-1	known	missense	c.34	p.E12K	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV3	HGNC	ENSG00000117036	169	0	0	156	27	14.75	-	-	-	T	157106111	C	T	157106111	3	4	310	1	0	0	0	0	1	0	0	0	5316	922	32	2	1552	2	ETV3	1	157106111	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3033548	157106111	92144510	13	34163										
SPTA1	0	genome.wustl.edu	37	chr1	158654937	158654937	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcatagctcttatcggttaaGatattgactttctccatgat	6	8	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	158654937	158654937	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.225	p.I75	0.002	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	180	0	0	147	40	21.39	-	-	-	A	158654937	G	A	158654937	2	1	310	1	0	0	0	0	0	0	0	1	15207	932	33	2		2	SPTA1	1	158654937	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1548826	158654937	90595684	14	34164										
TNFSF4	0	genome.wustl.edu	37	chr1	173157704	173157704	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gaattcgaggataccgatgtGatacctgagggaggaagaaa	14	5	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	173157704	173157704	G	C	SNP	TNFSF4	ENST00000281834	human	ensembl	69_37n	-1	known	nonsense	c.158	p.S53*	0.001	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	-	no_errors	TNFSF4	HGNC	ENSG00000117586	230	0	0	187	27	12.62	-	-	-	C	173157704	G	C	173157704	4	2	310	1	0	0	0	0	0	1	0	0	16405	1294	45	2	401	2	TNFSF4	1	173157704	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	14502767	173157704	76092917	15	34165										
LAMC1	0	genome.wustl.edu	37	chr1	183094653	183094653	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggtgcttgtgaccctggattCtacaatctgcagagtgggca	13	9	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	183094653	183094653	C	G	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.2769	p.F923L	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	52	0	0	62	13	17.33	-	-	-	G	183094653	C	G	183094653	3	3	310	1	0	0	0	0	1	0	0	0	8668	912	32	2	2827	2	LAMC1	1	183094653	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	9936949	183094653	66155968	16	34166										
HMCN1	0	genome.wustl.edu	37	chr1	186113455	186113455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaaacacagatgcaagtttGcaatgaaagaaattgtccaa	8	6	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	186113455	186113455	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.14075	p.C4692Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	80	0	0	50	33	39.76	-	-	-	A	186113455	G	A	186113455	3	1	310	1	0	0	0	0	1	0	0	0	7271	1319	46	4	14433	4	HMCN1	1	186113455	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3018802	186113455	63137166	17	34167										
CFHR5	0	genome.wustl.edu	37	chr1	196963292	196963292	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tacaaagttggagacgtgttGaaattctcctgcagaaaaaa	9	6	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	196963292	196963292	G	A	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	silent	c.585	p.L195	0.427	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	160	0	0	220	41	15.71	-	-	-	A	196963292	G	A	196963292	2	1	310	1	0	0	0	0	0	0	0	1	3317	1281	45	2		2	CFHR5	1	196963292	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	10849837	196963292	52287329	18	34168										
NAV1	0	genome.wustl.edu	37	chr1	201759887	201759887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caccttgacgtctcagctttCtgccaatgtgagtgccatga	9	12	2	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	201759887	201759887	C	G	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.3314	p.S1105C	0.942	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	132	0	0	161	125	43.71	-	-	-	G	201759887	C	G	201759887	3	3	310	1	0	0	0	0	1	0	0	0	10255	913	32	2	3421	2	NAV1	1	201759887	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4796595	201759887	47490734	19	34169										
CNTN2	0	genome.wustl.edu	37	chr1	205031020	205031020	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgagtggctaaaagtgatctCggacacagaggctgacattg	13	7	1	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	205031020	205031020	C	G	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.1001	p.S334W	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	17	0	0	23	7	23.33	-	-	-	G	205031020	C	G	205031020	3	3	310	1	0	0	0	0	1	0	0	0	3671	893	31	3	1031	3	CNTN2	1	205031020	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3271133	205031020	44219601	20	34170										
AVPR1B	0	genome.wustl.edu	37	chr1	206231046	206231046	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gccaccctcagcctcagcctCagcctaaccctcagtgggag	9	18	4	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	206231046	206231046	C	T	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	0.978	prints_Vprs_rcpt_V1B	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	9	0	0	31	7	18.42	-	-	-	T	206231046	C	T	206231046	2	4	310	1	0	0	0	0	0	0	0	1	1236	813	29	2		2	AVPR1B	1	206231046	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1200026	206231046	43019575	21	34171										
HLX	0	genome.wustl.edu	37	chr1	221054582	221054582	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cggcccgccggggtgcacctCtcaggcctgcagccctcggc	14	19	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	221054582	221054582	C	G	SNP	HLX	ENST00000366903	human	ensembl	69_37n	1	known	silent	c.639	p.L213	0.927	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630	121	0	0	112	21	15.79	-	-	-	G	221054582	C	G	221054582	2	3	310	1	0	0	0	0	0	0	0	1	7267	900	32	2		2	HLX	1	221054582	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	14823536	221054582	28196039	22	34172										
SIPA1L2	0	genome.wustl.edu	37	chr1	232649933	232649933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctctttggagttgaggtcctCcttgctccctaaaggggact	11	11	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	232649933	232649933	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385K	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	45	0	0	59	8	11.94	-	-	-	T	232649933	C	T	232649933	3	4	310	1	0	0	0	0	1	0	0	0	14419	864	30	2	4099	2	SIPA1L2	1	232649933	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	11595351	232649933	16600688	23	34173										
RYR2	0	genome.wustl.edu	37	chr1	237713931	237713931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccaacaaggacagcctccgcGaggctgtgcgcacgctgctg	13	15	0	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	237713931	237713931	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.3148	p.E1050K	1.000	pfam_Ryanodine_rcpt,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	194	0	0	174	23	11.68	-	-	-	A	237713931	G	A	237713931	3	1	310	1	0	0	0	0	1	0	0	0	13855	1059	37	1	3260	1	RYR2	1	237713931	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	5063998	237713931	11536690	24	34174										
EXO1	0	genome.wustl.edu	37	chr1	242042051	242042052	+	Frame_Shift_Ins	INS	-	-	T													0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctattgctttttttattaggINStttttttgcagttcagattc							TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	242042051	242042052	-	T	INS	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	frame_shift_ins	c.1515_1516	p.C507fs	1.000:1.000	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	180	0	0	191	39	16.96	-	-	-	T	242042052	-	T	242042051	7	5	310	1	0	1	1	0	0	0	0	0	5336	1275	44	0	1553	0	EXO1	1	242042051	Frame_Shift_Ins	INS	-	TCGA-AN-A0XW-01A-11D-A10G-09	4328120	242042051	7208570	25	34175										
ZNF692	0	genome.wustl.edu	37	chr1	249151646	249151646	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gcactctcggctgtgggcatGagacaagagcaccagatact	12	11	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	1	249151646	249151646	G	A	SNP	ZNF692	ENST00000451251	human	ensembl	69_37n	-1	known	missense	c.277	p.H93Y	0.284	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163	26	0	0	36	8	18.18	-	-	-	A	249151646	G	A	249151646	3	1	310	1	0	0	0	0	1	0	0	0	18193	1290	45	2	1333	2	ZNF692	1	249151646	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7109595	249151646	98975	26	34176										
GREB1	0	genome.wustl.edu	37	chr2	11720882	11720882	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gcaatgggtccggctgttttCaacggcaaagattccccgaa	11	11	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	11720882	11720882	C	T	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.825	p.F275	1.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	58	0	0	50	8	13.79	-	-	-	T	11720882	C	T	11720882	2	4	310	1	0	0	0	0	0	0	0	1	6811	825	29	2		2	GREB1	2	11720882	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		11720882	231478491	27	34177										
APOB	0	genome.wustl.edu	37	chr2	21231741	21231741	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gatgatctttactttcatttCtacaaagtcaattgtaaagg	6	6	4	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	21231741	21231741	C	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.7999	p.E2667Q	0.981	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	106	0	0	64	17	20.99	-	-	-	G	21231741	C	G	21231741	3	3	310	1	0	0	0	0	1	0	0	0	787	922	32	2	5708	2	APOB	2	21231741	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	9510859	21231741	221967632	28	34178										
CENPO	0	genome.wustl.edu	37	chr2	25039532	25039532	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tagagtgactttgcagccctCctgactgggcccttgcagag	12	12	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	25039532	25039532	C	A	SNP	CENPO	ENST00000260662	human	ensembl	69_37n	1	known	silent	c.612	p.L204	0.278	NULL	pfam_Centromere_CenpO	-	no_errors	CENPO	HGNC	ENSG00000138092	104	0	0	63	16	20.25	-	-	-	A	25039532	C	A	25039532	2	1	310	1	0	0	0	0	0	0	0	1	3268	842	30	2		2	CENPO	2	25039532	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3807791	25039532	218159841	29	34179										
C2orf16	0	genome.wustl.edu	37	chr2	27803414	27803414	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gcagcccatttaagaaggaaGaggattggagcaactcagac	12	8	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	27803414	27803414	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.3975	p.K1325N	0.029	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	71	0	0	52	20	27.78	-	-	-	C	27803414	G	C	27803414	3	2	310	1	0	0	0	0	1	0	0	0	2177	933	33	2	3977	2	C2orf16	2	27803414	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2763882	27803414	215395959	30	34180										
BIRC6	0	genome.wustl.edu	37	chr2	32836564	32836564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agttgagataatggcccaatGtgaggagtggattgcggata	15	4	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	32836564	32836564	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.14309	p.C4770Y	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	146	0	0	71	28	28.28	-	-	-	A	32836564	G	A	32836564	3	1	310	1	0	0	0	0	1	0	0	0	1443	1377	48	4	14599	4	BIRC6	2	32836564	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	5033150	32836564	210362809	31	34181										
CYP1B1	0	genome.wustl.edu	37	chr2	38298053	38298053	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agccaggatggagatgaagaGaaaaagctgcatcttagaaa	12	5	1	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	38298053	38298053	G	C	SNP	CYP1B1	ENST00000260630	human	ensembl	69_37n	-1	known	missense	c.1444	p.L482V	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1B1	HGNC	ENSG00000138061	100	0	0	66	19	22.09	-	-	-	C	38298053	G	C	38298053	3	2	310	1	0	0	0	0	1	0	0	0	4182	942	33	2	191	2	CYP1B1	2	38298053	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	5461489	38298053	204901320	32	34182										
C2orf15	0	genome.wustl.edu	37	chr2	99811355	99811355	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	taataaagatgcttggattaGaaaaagtatgcaattatttt	7	2	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	99811355	99811355	G	C	SNP	C2orf15	ENST00000424491	human	ensembl	69_37n	1	known	missense	c.364	p.E122Q	0.343	pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like	pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like	-	no_errors	C2orf15	HGNC	ENSG00000241962	173	0	0	110	38	25.68	-	-	-	C	99811355	G	C	99811355	3	2	310	1	0	0	0	0	1	0	0	0	2176	943	33	2		2	C2orf15	2	99811355	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	61513302	99811355	143388018	33	34183										
AFF3	0	genome.wustl.edu	37	chr2	100209770	100209770	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggcgctcaatacccctggctCctggggcaggtgttctggga	15	12	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	100209770	100209770	C	G	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.2428	p.E810Q	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	41	0	0	19	9	32.14	-	-	-	G	100209770	C	G	100209770	3	3	310	1	0	0	0	0	1	0	0	0	358	864	30	2	1371	2	AFF3	2	100209770	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	398415	100209770	142989603	34	34184										
GCC2	0	genome.wustl.edu	37	chr2	109088057	109088057	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaagttatttgttaaaactCagttgtatggttttcttaaa	7	3	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	109088057	109088057	C	A	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.2272	p.Q758K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	110	0	0	83	25	23.15	-	-	-	A	109088057	C	A	109088057	3	1	310	1	0	0	0	0	1	0	0	0	6336	827	29	2	2294	2	GCC2	2	109088057	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	8878287	109088057	134111316	35	34185										
TANK	0	genome.wustl.edu	37	chr2	162087994	162087994	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atgtaaatagcttcccacttCtggacccatctgatgcacct	6	13	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	162087994	162087994	C	G	SNP	TANK	ENST00000259075	human	ensembl	69_37n	1	known	missense	c.1033	p.L345V	1.000	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560	65	0	0	49	6	10.91	-	-	-	G	162087994	C	G	162087994	3	3	310	1	0	0	0	0	1	0	0	0	15638	912	32	2	1088	2	TANK	2	162087994	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	52999937	162087994	81111379	36	34186										
TTN	0	genome.wustl.edu	37	chr2	179584439	179584439	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgctgtctgcagacaattctCttccatctttgaaccacttg	6	12	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	179584439	179584439	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20048	p.R6683K	0.125	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	217	0	0	140	31	18.13	-	-	-	T	179584439	C	T	179584439	3	4	310	1	0	0	0	0	1	0	0	0	16832	913	32	2	80873	2	TTN	2	179584439	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	17496445	179584439	63614934	37	34187										
STK17B	0	genome.wustl.edu	37	chr2	197002326	197002326	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggatttagaagtcttgtcttCagaggaccttacagaatgat	10	6	3	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	197002326	197002326	C	T	SNP	STK17B	ENST00000263955	human	ensembl	69_37n	-1	known	missense	c.964	p.E322K	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17B	HGNC	ENSG00000081320	184	0	0	97	37	27.61	-	-	-	T	197002326	C	T	197002326	3	4	310	1	0	0	0	0	1	0	0	0	15382	835	29	2	158	2	STK17B	2	197002326	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	17417887	197002326	46197047	38	34188										
SGOL2	0	genome.wustl.edu	37	chr2	201437093	201437093	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aatcccagctctttctactaGagataatgaaaatcaatgtg	6	8	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	201437093	201437093	G	C	SNP	SGOL2	ENST00000357799	human	ensembl	69_37n	1	known	missense	c.2024	p.R675T	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	42	0	0	36	11	23.4	-	-	-	C	201437093	G	C	201437093	3	2	310	1	0	0	0	0	1	0	0	0	14305	942	33	2	2046	2	SGOL2	2	201437093	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4434767	201437093	41762280	39	34189										
NBEAL1	0	genome.wustl.edu	37	chr2	203990152	203990152	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agccactttagtgaaggacaGattcctgaagaaaagaatga	10	6	0	6			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	203990152	203990152	G	C	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.2673	p.Q891H	0.978	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	175	0	0	110	40	26.67	-	-	-	C	203990152	G	C	203990152	3	2	310	1	0	0	0	0	1	0	0	0	10260	933	33	2	2743	2	NBEAL1	2	203990152	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2553059	203990152	39209221	40	34190										
ATIC	0	genome.wustl.edu	37	chr2	216197123	216197124	+	Frame_Shift_Ins	INS	-	-	A													0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gttctaaatggagcccctggINSatttataaacttgtgcgatg							TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	216197123	216197124	-	A	INS	ATIC	ENST00000236959	human	ensembl	69_37n	1	known	frame_shift_ins	c.707_708	p.F237fs	1.000:0.833	pfam_AICARFT_IMPCHas,superfamily_Cytidine_deaminase-like,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363	128	0	0	92	15	14.02	-	-	-	A	216197124	-	A	216197123	7	5	310	1	0	1	1	0	0	0	0	0	1109	1174	41	0	737	0	ATIC	2	216197123	Frame_Shift_Ins	INS	-	TCGA-AN-A0XW-01A-11D-A10G-09	12206971	216197123	27002250	41	34191										
CXCR7	0	genome.wustl.edu	37	chr2	237489685	237489685	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcacgtctgcgtccaacaatGagacctactgccggtccttc	8	15	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	237489685	237489685	G	A	SNP	CXCR7	ENST00000272928	human	ensembl	69_37n	1	known	missense	c.577	p.E193K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Frt_met_rcpt	-	no_errors	CXCR7	HGNC	ENSG00000144476	20	0	0	13	5	27.78	-	-	-	A	237489685	G	A	237489685	3	1	310	1	0	0	0	0	1	0	0	0	4127	1291	45	2	579	2	CXCR7	2	237489685	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	21292562	237489685	5709688	42	34192										
LRRFIP1	0	genome.wustl.edu	37	chr2	238664814	238664814	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caaggaggccctgaagcaaaGagaggaaatgctcgaggtag	15	7	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	238664814	238664814	G	C	SNP	LRRFIP1	ENST00000392000	human	ensembl	69_37n	1	known	missense	c.731	p.R244T	1.000	pfam_Leu-rich_rep_flightless-int_pr	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	91	0	0	68	10	12.82	-	-	-	C	238664814	G	C	238664814	3	2	310	1	0	0	0	0	1	0	0	0	9093	942	33	2	1247	2	LRRFIP1	2	238664814	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1175129	238664814	4534559	43	34193										
HDLBP	0	genome.wustl.edu	37	chr2	242186244	242186244	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gcctgtgatgataatggtctCtgaattgctattctctgctg	10	8	2	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	2	242186244	242186244	C	G	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.1873	p.E625Q	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	109	0	0	53	18	25.35	-	-	-	G	242186244	C	G	242186244	3	3	310	1	0	0	0	0	1	0	0	0	7076	922	32	2	1985	2	HDLBP	2	242186244	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3521430	242186244	1013129	44	34194										
CRTAP	0	genome.wustl.edu	37	chr3	33175749	33175749	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctaaggaaaatataatggatGatgatgaggtaagttttcat	10	2	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	33175749	33175749	G	A	SNP	CRTAP	ENST00000320954	human	ensembl	69_37n	1	known	missense	c.1144	p.D382N	1.000	NULL	NULL	-	no_errors	CRTAP	HGNC	ENSG00000170275	202	1	0.49	144	36	20	-	-	-	A	33175749	G	A	33175749	3	1	310	1	0	0	0	0	1	0	0	0	3928	1290	45	2	1166	2	CRTAP	3	33175749	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		33175749	164846681	45	34195										
MYRIP	0	genome.wustl.edu	37	chr3	40291811	40291811	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agacgggatcagaagcaaagGacccaggtgtgtttgtccct	13	9	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	40291811	40291811	G	T	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.2361	p.R787S	0.999	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	184	0	0	97	35	26.52	-	-	-	T	40291811	G	T	40291811	3	4	310	1	0	0	0	0	1	0	0	0	10172	1165	41	2	2411	2	MYRIP	3	40291811	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7116062	40291811	157730619	46	34196										
ZNF197	0	genome.wustl.edu	37	chr3	44685697	44685697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	accaatgagtccaagattgaGattcagaaaatctagtgtca	8	7	3	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	44685697	44685697	G	C	SNP	ZNF197	ENST00000344387	human	ensembl	69_37n	1	known	missense	c.3075	p.E1025D	0.985	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448	86	0	0	63	23	26.74	-	-	-	C	44685697	G	C	44685697	3	2	310	1	0	0	0	0	1	0	0	0	17855	933	33	2	3093	2	ZNF197	3	44685697	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4393886	44685697	153336733	47	34197										
CCR2	0	genome.wustl.edu	37	chr3	46399964	46399964	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gggagaagttcagaaggtatCtctcggtgttcttccgaaag	13	7	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	46399964	46399964	C	T	SNP	CCR2	ENST00000445132	human	ensembl	69_37n	1	known	missense	c.946	p.L316F	0.046	prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	68	0	0	68	15	18.07	-	-	-	T	46399964	C	T	46399964	3	4	310	1	0	0	0	0	1	0	0	0	2970	913	32	2	948	2	CCR2	3	46399964	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1714267	46399964	151622466	48	34198										
CDC25A	0	genome.wustl.edu	37	chr3	48224485	48224485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcaagagaatcagaatggctCctcttcagagctggactaca	9	10	4	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	48224485	48224485	C	G	SNP	CDC25A	ENST00000302506	human	ensembl	69_37n	-1	known	missense	c.363	p.R121S	0.996	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25A	HGNC	ENSG00000164045	72	0	0	42	12	22.22	-	-	-	G	48224485	C	G	48224485	3	3	310	1	0	0	0	0	1	0	0	0	3091	854	30	2	1255	2	CDC25A	3	48224485	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1824521	48224485	149797945	49	34199										
CACNA2D2	0	genome.wustl.edu	37	chr3	50415439	50415439	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tccttgtccagaggccttacCagtgcatcctcatacacgtt	7	14	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	50415439	50415439	C	G	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	silent	c.1479	p.L493	1.000	pfam_Cache_domain	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	42	0	0	14	7	33.33	-	-	-	G	50415439	C	G	50415439	2	3	310	1	0	0	0	0	0	0	0	1	2574	608	21	4		4	CACNA2D2	3	50415439	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	2190954	50415439	147606991	50	34200										
GLYCTK	0	genome.wustl.edu	37	chr3	52327124	52327124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtcatggacacccacctcttGttcctgcggcctcggtgatg	11	14	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	52327124	52327124	G	C	SNP	GLYCTK	ENST00000436784	human	ensembl	69_37n	1	known	missense	c.1554	p.L518F	0.964	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237	56	0	0	22	4	15.38	-	-	-	C	52327124	G	C	52327124	3	2	310	1	0	0	0	0	1	0	0	0	6534	1368	48	4	1568	4	GLYCTK	3	52327124	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1911685	52327124	145695306	51	34201										
ERC2	0	genome.wustl.edu	37	chr3	56173584	56173584	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttctttggcagtaagtgactCtttgagcacttcaatgtgtt	9	7	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	56173584	56173584	C	G	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	missense	c.1426	p.E476Q	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	203	0	0	190	25	11.63	-	-	-	G	56173584	C	G	56173584	3	3	310	1	0	0	0	0	1	0	0	0	5248	922	32	2	1485	2	ERC2	3	56173584	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3846460	56173584	141848846	52	34202										
FAM116A	0	genome.wustl.edu	37	chr3	57632137	57632137	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caccagctcccagagcatctGactatgaaggaaaactgggc	10	12	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	57632137	57632137	G	A	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	nonsense	c.847	p.Q283*	1.000	pfam_Afi1_N,pfam_DENN_dom	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	66	0	0	47	8	14.55	-	-	-	A	57632137	G	A	57632137	4	1	310	1	0	0	0	0	0	1	0	0	5447	1299	45	2	1023	2	FAM116A	3	57632137	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1458553	57632137	140390293	53	34203										
CADPS	0	genome.wustl.edu	37	chr3	62423808	62423808	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cctttctatgtacatctcctCattgaccttatcacgcagga	5	13	4	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	62423808	62423808	C	T	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3748	p.E1250K	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	75	0	0	48	15	23.81	-	-	-	T	62423808	C	T	62423808	3	4	310	1	0	0	0	0	1	0	0	0	2595	835	29	2	325	2	CADPS	3	62423808	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4791671	62423808	135598622	54	34204										
ROBO1	0	genome.wustl.edu	37	chr3	78710205	78710205	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tccagggttttggcaaacttGatttcactatctgctccttg	8	10	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	78710205	78710205	G	C	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.2295	p.I765M	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	251	0	0	165	45	21.43	-	-	-	C	78710205	G	C	78710205	3	2	310	1	0	0	0	0	1	0	0	0	13599	1280	45	2	2724	2	ROBO1	3	78710205	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	16286397	78710205	119312225	55	34205										
GBE1	0	genome.wustl.edu	37	chr3	81692075	81692075	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctgtgtaccacatctaagagGactatgatacccatggaatg	9	9	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	81692075	81692075	G	A	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	silent	c.849	p.V283	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	131	0	0	70	23	24.73	-	-	-	A	81692075	G	A	81692075	2	1	310	1	0	0	0	0	0	0	0	1	6320	1161	41	2		2	GBE1	3	81692075	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2981870	81692075	116330355	56	34206										
MYH15	0	genome.wustl.edu	37	chr3	108112937	108112937	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acactcctgcaccacctcttCagcttctttctgcatccggg	6	17	4	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	108112937	108112937	C	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.5260	p.E1754K	0.991	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	79	0	0	39	21	35	-	-	-	T	108112937	C	T	108112937	3	4	310	1	0	0	0	0	1	0	0	0	10106	835	29	2	604	2	MYH15	3	108112937	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	26420862	108112937	89909493	57	34207										
TF	0	genome.wustl.edu	37	chr3	133476751	133476751	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccaagatgtacctgggctatGagtatgtcactgccatccgg	11	11	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	133476751	133476751	G	C	SNP	TF	ENST00000402696	human	ensembl	69_37n	1	known	missense	c.1009	p.E337Q	0.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	TF	HGNC	ENSG00000091513	91	0	0	47	19	28.79	-	-	-	C	133476751	G	C	133476751	3	2	310	1	0	0	0	0	1	0	0	0	15880	1291	45	2	1039	2	TF	3	133476751	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	25363814	133476751	64545679	58	34208										
PEX5L	0	genome.wustl.edu	37	chr3	179597907	179597907	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aggagatctaagccagtggtCaatactaccagaaatggaag	11	7	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	3	179597907	179597907	C	A	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.315	p.L105F	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	255	0	0	173	62	26.38	-	-	-	A	179597907	C	A	179597907	3	1	310	1	0	0	0	0	1	0	0	0	11823	825	29	2	1609	2	PEX5L	3	179597907	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	46121156	179597907	18424523	59	34209										
CPEB2	0	genome.wustl.edu	37	chr4	15054051	15054051	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	attctaggtcgttcttccctCtttccaatagatgatggctt	7	10	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	4	15054051	15054051	C	G	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	silent	c.2214	p.L738	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	367	0	0	291	54	15.61	-	-	-	G	15054051	C	G	15054051	2	3	310	1	0	0	0	0	0	0	0	1	3831	900	32	2		2	CPEB2	4	15054051	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		15054051	176100225	60	34210										
C4orf40	0	genome.wustl.edu	37	chr4	71024408	71024408	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cagccacacctgtagcagctGagcctgctgcaggggcccct	12	16	0	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	4	71024408	71024408	G	C	SNP	C4orf40	ENST00000344526	human	ensembl	69_37n	1	known	missense	c.439	p.E147Q	0.005	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	64	0	0	30	16	34.78	-	-	-	C	71024408	G	C	71024408	3	2	310	1	0	0	0	0	1	0	0	0	2290	1291	45	2	449	2	C4orf40	4	71024408	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	55970357	71024408	120129868	61	34211										
WDFY3	0	genome.wustl.edu	37	chr4	85758097	85758097	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	catacctgtacaaaaactttCtggagtagtcctcgacgttc	7	11	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	4	85758097	85758097	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.561	p.Q187	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	89	0	0	35	12	25.53	-	-	-	T	85758097	C	T	85758097	2	4	310	1	0	0	0	0	0	0	0	1	17367	912	32	2		2	WDFY3	4	85758097	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	14733689	85758097	105396179	62	34212										
C4orf3	0	genome.wustl.edu	37	chr4	120221638	120221638	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tccctccctcgctaaagcctCgccgctcccggagaccatct	7	20	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	4	120221638	120221638	C	G	SNP	C4orf3	ENST00000399075	human	ensembl	69_37n	-1	known	missense	c.452	p.R151P	0.535	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096	65	0	0	40	17	29.82	-	-	-	G	120221638	C	G	120221638	3	3	310	1	0	0	0	0	1	0	0	0	2281	884	31	3	155	3	C4orf3	4	120221638	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	34463541	120221638	70932638	63	34213										
C7	0	genome.wustl.edu	37	chr5	40936479	40936479	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	attggtttgcaatggggattCtgactgtgatgaagacagtg	14	4	1	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	40936479	40936479	C	T	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.320	p.S107F	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	120	0	0	79	12	13.19	-	-	-	T	40936479	C	T	40936479	3	4	310	1	0	0	0	0	1	0	0	0	2398	913	32	2	338	2	C7	5	40936479	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		40936479	139978781	64	34214										
ZNF131	0	genome.wustl.edu	37	chr5	43161888	43161888	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tatcttcgagagagcgcatgGaaacagcacctaaattgtta	9	8	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	43161888	43161888	G	C	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.909	p.W303C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	72	0	0	47	12	20.34	-	-	-	C	43161888	G	C	43161888	3	2	310	1	0	0	0	0	1	0	0	0	17817	1183	41	2	825	2	ZNF131	5	43161888	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2225409	43161888	137753372	65	34215										
CMYA5	0	genome.wustl.edu	37	chr5	79032398	79032398	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aatcagaagccatgctcgcaGaggctcacccagaaatcaga	9	12	3	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	79032398	79032398	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.7810	p.E2604K	0.020	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	115	0	0	75	15	16.67	-	-	-	A	79032398	G	A	79032398	3	1	310	1	0	0	0	0	1	0	0	0	3620	943	33	2	7816	2	CMYA5	5	79032398	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	35870510	79032398	101882862	66	34216										
ZCCHC9	0	genome.wustl.edu	37	chr5	80600664	80600664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acatgaagaagggatcctttGagggaacaagccaaaaccta	10	8	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	80600664	80600664	G	C	SNP	ZCCHC9	ENST00000254037	human	ensembl	69_37n	1	known	missense	c.88	p.E30Q	0.956	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC9	HGNC	ENSG00000131732	90	0	0	46	11	19.3	-	-	-	C	80600664	G	C	80600664	3	2	310	1	0	0	0	0	1	0	0	0	17691	1291	45	2	90	2	ZCCHC9	5	80600664	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1568266	80600664	100314596	67	34217										
DMXL1	0	genome.wustl.edu	37	chr5	118482538	118482538	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	attaataccaacaggcagctCacctaatggattttctgaga	7	9	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	118482538	118482538	C	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	nonsense	c.2576	p.S859*	0.513	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	176	0	0	124	60	32.61	-	-	-	G	118482538	C	G	118482538	4	3	310	1	0	0	0	0	0	1	0	0	4630	838	29	2	2638	2	DMXL1	5	118482538	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	37881874	118482538	62432722	68	34218										
DMXL1	0	genome.wustl.edu	37	chr5	118569138	118569138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aattcaagagttacaagaatGagatttaactatcagggaaa	8	4	2	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	118569138	118569138	G	C	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.8442	p.M2814I	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	184	0	0	125	42	25.15	-	-	-	C	118569138	G	C	118569138	3	2	310	1	0	0	0	0	1	0	0	0	4630	1290	45	2	8529	2	DMXL1	5	118569138	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	86600	118569138	62346122	69	34219										
SNX2	0	genome.wustl.edu	37	chr5	122154620	122154620	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctcagcttgcagaggttgagGagaagatagaccagttacat	12	7	1	5			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	122154620	122154620	G	C	SNP	SNX2	ENST00000379516	human	ensembl	69_37n	1	known	missense	c.1114	p.E372Q	1.000	pfam_Vps5_C	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX2	HGNC	ENSG00000205302	177	0	0	111	26	18.98	-	-	-	C	122154620	G	C	122154620	3	2	310	1	0	0	0	0	1	0	0	0	14980	1175	41	2	1156	2	SNX2	5	122154620	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3585482	122154620	58760640	70	34220										
ZNF608	0	genome.wustl.edu	37	chr5	124080411	124080411	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtgaattcccctggggagcaGaggcctgaacagaagcaaat	13	9	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	124080411	124080411	G	A	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.272	p.S91F	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	245	0	0	171	41	19.34	-	-	-	A	124080411	G	A	124080411	3	1	310	1	0	0	0	0	1	0	0	0	18130	942	33	2	4302	2	ZNF608	5	124080411	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1925791	124080411	56834849	71	34221										
RAD50	0	genome.wustl.edu	37	chr5	131925407	131925407	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctggactgggaagaataattGagttaaaatcagaaatccta	9	5	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	131925407	131925407	G	A	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	missense	c.1330	p.E444K	1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	179	0	0	138	31	18.34	-	-	-	A	131925407	G	A	131925407	3	1	310	1	0	0	0	0	1	0	0	0	13067	1291	45	2	1364	2	RAD50	5	131925407	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7844996	131925407	48989853	72	34222										
HSPA4	0	genome.wustl.edu	37	chr5	132403197	132403197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atttgtggaggcagaaaaatCtaaccttgcatatgatattg	9	5	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	132403197	132403197	C	G	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	missense	c.254	p.S85C	0.974	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	214	0	0	130	42	24.28	-	-	-	G	132403197	C	G	132403197	3	3	310	1	0	0	0	0	1	0	0	0	7465	913	32	2	264	2	HSPA4	5	132403197	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	477790	132403197	48512063	73	34223										
ETF1	0	genome.wustl.edu	37	chr5	137846256	137846256	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aagaaaataatcacatacctCtttgtctgtgaaatgagatt	6	6	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	137846256	137846256	C	G	SNP	ETF1	ENST00000360541	human	ensembl	69_37n	-1	known	missense	c.1081	p.E361Q	1.000	pfam_eRF1_3,tigrfam_Peptide_chain-rel_eRF1/aRF1	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705	210	0	0	166	32	16.16	-	-	-	G	137846256	C	G	137846256	3	3	310	1	0	0	0	0	1	0	0	0	5305	922	32	2	244	2	ETF1	5	137846256	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	5443059	137846256	43069004	74	34224										
CTNNA1	0	genome.wustl.edu	37	chr5	138223329	138223329	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aacatgccaacaaattgattGaggtaagtgaattagcagtt	9	5	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	138223329	138223329	G	C	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	missense	c.1294	p.E432Q	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	147	0	0	89	21	18.92	-	-	-	C	138223329	G	C	138223329	3	2	310	1	0	0	0	0	1	0	0	0	4044	1291	45	2	1324	2	CTNNA1	5	138223329	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	377073	138223329	42691931	75	34225										
PCDHAC2	0	genome.wustl.edu	37	chr5	140358575	140358575	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tggcgttactctgcctccctGagagcaggcatgcacaggta	12	12	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	140358575	140358575	G	C	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	silent	c.2607	p.L869	0.997	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	66	0	0	40	12	23.08	-	-	-	C	140358575	G	C	140358575	2	2	310	1	0	0	0	0	0	0	0	1	11606	1277	45	2		2	PCDHAC2	5	140358575	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2135246	140358575	40556685	76	34226										
PCDHB8	0	genome.wustl.edu	37	chr5	140560003	140560003	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tttaggaatggctttggtttCagccttcagttaaagtaatt	9	5	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	140560003	140560003	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	silent	c.2388	p.F796	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	111	0	0	85	16	15.84	-	-	-	T	140560003	C	T	140560003	2	4	310	1	0	0	0	0	0	0	0	1	11621	825	29	2		2	PCDHB8	5	140560003	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	201428	140560003	40355257	77	34227										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801497	140801497	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccattcgtgtggtggtcctcGatgtaaatgatcacatccca	9	11	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	140801497	140801497	G	C	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.703	p.D235H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	23	0	0	19	6	24	-	-	-	C	140801497	G	C	140801497	3	2	310	1	0	0	0	0	1	0	0	0	11625	1058	37	3	705	3	PCDHGA11	5	140801497	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	241494	140801497	40113763	78	34228										
PCYOX1L	0	genome.wustl.edu	37	chr5	148743738	148743738	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atcagcttcctgaggctgcaGatgtgggtggaggaggtcat	16	7	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	148743738	148743738	G	T	SNP	PCYOX1L	ENST00000274569	human	ensembl	69_37n	1	known	missense	c.435	p.Q145H	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882	123	0	0	68	20	22.73	-	-	-	T	148743738	G	T	148743738	3	4	310	1	0	0	0	0	1	0	0	0	11682	933	33	2	445	2	PCYOX1L	5	148743738	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7942241	148743738	32171522	79	34229										
LMAN2	0	genome.wustl.edu	37	chr5	176778543	176778543	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cacagaccccaacaacaaaaGaagaaagagaggtgtagtgg	11	8	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	5	176778543	176778543	G	C	SNP	LMAN2	ENST00000303127	human	ensembl	69_37n	-1	known	missense	c.106	p.L36V	0.129	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN2	HGNC	ENSG00000169223	38	0	0	20	4	16.67	-	-	-	C	176778543	G	C	176778543	3	2	310	1	0	0	0	0	1	0	0	0	8894	942	33	2	996	2	LMAN2	5	176778543	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	28034805	176778543	4136717	80	34230										
KIF13A	0	genome.wustl.edu	37	chr6	17855684	17855684	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttaccctttggggtctaaaaGatcccgaactttctcattat	6	10	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	17855684	17855684	G	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.478	p.L160V	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	112	0	0	65	22	25.29	-	-	-	C	17855684	G	C	17855684	3	2	310	1	0	0	0	0	1	0	0	0	8326	942	33	2	5100	2	KIF13A	6	17855684	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		17855684	153259383	81	34231										
HIST1H2AB	0	genome.wustl.edu	37	chr6	26033520	26033520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccccaagagtttattaagctCctcgtcattgcggatggcca	9	12	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	26033520	26033520	C	T	SNP	HIST1H2AB	ENST00000259791	human	ensembl	69_37n	-1	known	missense	c.277	p.E93K	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AB	HGNC	ENSG00000137259	40	0	0	19	5	20.83	-	-	-	T	26033520	C	T	26033520	3	4	310	1	0	0	0	0	1	0	0	0	7180	864	30	2	119	2	HIST1H2AB	6	26033520	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	8177836	26033520	145081547	82	34232										
FTSJD2	0	genome.wustl.edu	37	chr6	37447030	37447030	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cagactccattgccccatttCagtaagtagctctcctccaa	5	15	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	37447030	37447030	C	T	SNP	FTSJD2	ENST00000373451	human	ensembl	69_37n	1	known	missense	c.2374	p.H792Y	1.000	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_Rsp5_WWP,pfscan_G_patch_dom	-	no_errors	FTSJD2	HGNC	ENSG00000137200	81	0	0	46	15	24.59	-	-	-	T	37447030	C	T	37447030	3	4	310	1	0	0	0	0	1	0	0	0	6140	840	29	2	2460	2	FTSJD2	6	37447030	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	11413510	37447030	133668037	83	34233										
DDX43	0	genome.wustl.edu	37	chr6	74104715	74104715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtgtcccgagcgccagagagGaggccggcggaggagttgaa	19	9	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	74104715	74104715	G	T	SNP	DDX43	ENST00000370336	human	ensembl	69_37n	1	known	missense	c.87	p.R29S	0.057	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007	22	0	0	10	4	28.57	-	-	-	T	74104715	G	T	74104715	3	4	310	1	0	0	0	0	1	0	0	0	4394	1165	41	2	89	2	DDX43	6	74104715	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	36657685	74104715	97010352	84	34234										
ASCC3	0	genome.wustl.edu	37	chr6	101054655	101054655	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ataacgtcttgtttttccatCatagtattctgttcccttaa	4	9	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	101054655	101054655	C	G	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.5005	p.D1669H	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	119	0	0	108	16	12.8	-	-	-	G	101054655	C	G	101054655	3	3	310	1	0	0	0	0	1	0	0	0	1037	826	29	2	1647	2	ASCC3	6	101054655	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	26949940	101054655	70060412	85	34235										
SYNE1	0	genome.wustl.edu	37	chr6	152671773	152671773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctttcctatgctgcacaggtCctggtaatcactttgaagtt	8	10	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	152671773	152671773	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.11713	p.D3905N	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	177	0	0	85	53	38.41	-	-	-	T	152671773	C	T	152671773	3	4	310	1	0	0	0	0	1	0	0	0	15537	855	30	2	15057	2	SYNE1	6	152671773	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	51617118	152671773	18443294	86	34236										
PLG	0	genome.wustl.edu	37	chr6	161128786	161128786	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtgataatggctgaaaacagGaagtcctccataatcattag	9	7	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	161128786	161128786	G	A	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	silent	c.240	p.R80	1.000	pirsf_Pept_S1A_plasmin,pfam_PAN-1_domain,superfamily_Kringle-like,smart_Pan_app,pfscan_Pan_app	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	351	0	0	218	52	19.26	-	-	-	A	161128786	G	A	161128786	2	1	310	1	0	0	0	0	0	0	0	1	12160	1165	41	2		2	PLG	6	161128786	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	8457013	161128786	9986281	87	34237										
PLG	0	genome.wustl.edu	37	chr6	161160215	161160215	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcttggagcccacacgaaaaGatattgccttgctaaagcta	8	10	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	6	161160215	161160215	G	C	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.1993	p.D665H	0.999	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	132	0	0	82	10	10.87	-	-	-	C	161160215	G	C	161160215	3	2	310	1	0	0	0	0	1	0	0	0	12160	942	33	2	2059	2	PLG	6	161160215	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	31429	161160215	9954852	88	34238										
TMEM196	0	genome.wustl.edu	37	chr7	19761719	19761719	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tacactcttccattaaatatCagctgtggtcctccattgct	5	12	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	19761719	19761719	C	G	SNP	TMEM196	ENST00000405764	human	ensembl	69_37n	-1	known	silent	c.498	p.L166	0.997	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452	386	0	0	245	70	22.22	-	-	-	G	19761719	C	G	19761719	2	3	310	1	0	0	0	0	0	0	0	1	16213	813	29	2		2	TMEM196	7	19761719	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		19761719	139376944	89	34239										
HOXA2	0	genome.wustl.edu	37	chr7	27140466	27140466	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aactgggtgaaactgcatctGaaagctgcaggcaggaatct	12	8	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	27140466	27140466	G	A	SNP	HOXA2	ENST00000222718	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996	50	0	0	22	4	15.38	-	-	-	A	27140466	G	A	27140466	3	1	310	1	0	0	0	0	1	0	0	0	7343	1294	45	2	124	2	HOXA2	7	27140466	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7378747	27140466	131998197	90	34240										
STK17A	0	genome.wustl.edu	37	chr7	43663366	43663366	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tatcacctttcttaggcaatGataaacaagaaacattctta	4	8	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	43663366	43663366	G	C	SNP	STK17A	ENST00000319357	human	ensembl	69_37n	1	known	missense	c.799	p.D267H	0.987	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17A	HGNC	ENSG00000164543	247	0	0	184	51	21.7	-	-	-	C	43663366	G	C	43663366	3	2	310	1	0	0	0	0	1	0	0	0	15381	1290	45	2	821	2	STK17A	7	43663366	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	16522900	43663366	115475297	91	34241										
ABCB4	0	genome.wustl.edu	37	chr7	87042989	87042989	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcaaattttctttcctgggtCaaagacacaactgtcctaat	5	10	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	87042989	87042989	C	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	silent	c.2727	p.L909	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	255	0	0	210	34	13.93	-	-	-	T	87042989	C	T	87042989	2	4	310	1	0	0	0	0	0	0	0	1	43	825	29	2		2	ABCB4	7	87042989	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	43379623	87042989	72095674	92	34242										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97933661	97933661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctattctcagacaagttcacGgtgctgatgcttctcactgg	9	11	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	97933661	97933661	G	A	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	silent	c.1269	p.T423	0.001	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	60	0	0	40	7	14.89	-	-	-	A	97933661	G	A	97933661	2	1	310	1	0	0	0	0	0	0	0	1	1306	1103	39	1		1	BAIAP2L1	7	97933661	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	10890672	97933661	61205002	93	34243										
MUC17	0	genome.wustl.edu	37	chr7	100678770	100678770	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttctgcaatcagcatcctttCaacaactcctgttgacaaca	4	13	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	100678770	100678770	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	nonsense	c.4073	p.S1358*	0.003	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	126	0	0	126	24	16	-	-	-	G	100678770	C	G	100678770	4	3	310	1	0	0	0	0	0	1	0	0	10046	838	29	2	4083	2	MUC17	7	100678770	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	2745109	100678770	58459893	94	34244										
FLNC	0	genome.wustl.edu	37	chr7	128491678	128491678	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agccccttcacagccaagatCacaggtgaggcgggtgtatg	13	11	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	128491678	128491678	C	G	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.5838	p.I1946M	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	19	0	0	10	5	33.33	-	-	-	G	128491678	C	G	128491678	3	3	310	1	0	0	0	0	1	0	0	0	5981	816	29	2	5976	2	FLNC	7	128491678	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	27812908	128491678	30646985	95	34245										
MEST	0	genome.wustl.edu	37	chr7	130140330	130140330	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aagatggaggtgtgctgtcaCccatcctcacacgactgatg	11	11	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	130140330	130140330	C	G	SNP	MEST	ENST00000223215	human	ensembl	69_37n	1	known	missense	c.604	p.P202A	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_DUF1057,prints_Epox_hydrolase-like	-	no_errors	MEST	HGNC	ENSG00000106484	124	0	0	69	17	19.77	-	-	-	G	130140330	C	G	130140330	3	3	310	1	0	0	0	0	1	0	0	0	9555	507	18	4	634	4	MEST	7	130140330	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1648652	130140330	28998333	96	34246										
EZH2	0	genome.wustl.edu	37	chr7	148508733	148508733	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttacctctccacagtattctGagatgaattcatttttctgc	5	10	4	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	7	148508733	148508733	G	C	SNP	EZH2	ENST00000320356	human	ensembl	69_37n	-1	known	nonsense	c.1931	p.S644*	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462	207	0	0	111	35	23.97	-	-	-	C	148508733	G	C	148508733	4	2	310	1	0	0	0	0	0	1	0	0	5371	1294	45	2	344	2	EZH2	7	148508733	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	18368403	148508733	10629930	97	34247										
MYOM2	0	genome.wustl.edu	37	chr8	2000284	2000284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atgttcctgaaggcgagcttCcacccaggcatcttcccaga	9	14	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	8	2000284	2000284	C	A	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.116	p.S39Y	0.001	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	45	0	0	20	8	27.59	-	-	-	A	2000284	C	A	2000284	3	1	310	1	0	0	0	0	1	0	0	0	10164	855	30	2	122	2	MYOM2	8	2000284	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		2000284	144363738	98	34248										
EIF3E	0	genome.wustl.edu	37	chr8	109215698	109215698	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tacaatccacctttcagcttCttctggagtcatgttcaatt	5	11	5	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	8	109215698	109215698	C	T	SNP	EIF3E	ENST00000220849	human	ensembl	69_37n	-1	known	missense	c.1096	p.E366K	1.000	pfam_PCI_dom,smart_PCI_dom,pirsf_Transl_init_fac_3_su6_euk	pfam_eIF3_su6_N,pfam_PCI_dom,smart_PCI_dom,pirsf_Transl_init_fac_3_su6_euk	-	no_errors	EIF3E	HGNC	ENSG00000104408	332	0	0	271	58	17.63	-	-	-	T	109215698	C	T	109215698	3	4	310	1	0	0	0	0	1	0	0	0	5052	922	32	2	253	2	EIF3E	8	109215698	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	107215414	109215698	37148324	99	34249										
COL14A1	0	genome.wustl.edu	37	chr8	121256230	121256230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tggcgaaggcgtcagcgtctCcgctcctggaaaaacctgta	12	12	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	8	121256230	121256230	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.2462	p.S821F	0.997	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	75	0	0	38	10	20.83	-	-	-	T	121256230	C	T	121256230	3	4	310	1	0	0	0	0	1	0	0	0	3701	855	30	2	2536	2	COL14A1	8	121256230	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	12040532	121256230	25107792	100	34250										
KIAA0196	0	genome.wustl.edu	37	chr8	126073342	126073342	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acctcttccaaagcttgtatCagttgtacagtttttctgcc	6	11	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	8	126073342	126073342	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	silent	c.1503	p.L501	0.949	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	229	0	0	155	30	16.22	-	-	-	T	126073342	C	T	126073342	2	4	310	1	0	0	0	0	0	0	0	1	8213	813	29	2		2	KIAA0196	8	126073342	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4817112	126073342	20290680	101	34251										
NTRK2	0	genome.wustl.edu	37	chr9	87342871	87342871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgggctggcctggaattgacGatggtgagtaactgacactt	14	7	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	87342871	87342871	G	A	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	missense	c.1156	p.D386N	0.870	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	100	0	0	74	25	25.25	-	-	-	A	87342871	G	A	87342871	3	1	310	1	0	0	0	0	1	0	0	0	10780	1058	37	1	1186	1	NTRK2	9	87342871	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		87342871	53870560	102	34252										
IARS	0	genome.wustl.edu	37	chr9	95033329	95033329	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaagtcggccttgttccttCaaagtcctgatgatactttt	8	9	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	95033329	95033329	C	G	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.1143	p.L381F	0.993	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	186	0	0	103	50	32.68	-	-	-	G	95033329	C	G	95033329	3	3	310	1	0	0	0	0	1	0	0	0	7527	825	29	2	2737	2	IARS	9	95033329	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	7690458	95033329	46180102	103	34253										
FKTN	0	genome.wustl.edu	37	chr9	108370197	108370197	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	taccacactctaggtttattGagtgtaggtataaagaagct	9	6	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	108370197	108370197	G	C	SNP	FKTN	ENST00000223528	human	ensembl	69_37n	1	known	missense	c.745	p.E249Q	1.000	superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	pfam_LicD,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	-	no_errors	FKTN	HGNC	ENSG00000106692	171	0	0	113	21	15.67	-	-	-	C	108370197	G	C	108370197	3	2	310	1	0	0	0	0	1	0	0	0	5965	1291	45	2	763	2	FKTN	9	108370197	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	13336868	108370197	32843234	104	34254										
ZNF462	0	genome.wustl.edu	37	chr9	109687510	109687510	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaagattcatgaataggttCcagtgccccttttgtccttt	8	9	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	109687510	109687510	C	G	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.1317	p.F439L	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	133	0	0	70	15	17.44	-	-	-	G	109687510	C	G	109687510	3	3	310	1	0	0	0	0	1	0	0	0	18022	854	30	2	1323	2	ZNF462	9	109687510	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1317313	109687510	31525921	105	34255										
SVEP1	0	genome.wustl.edu	37	chr9	113233667	113233667	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acatacgccctctcagcactGagcctggtctgcagaagggg	12	13	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	113233667	113233667	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.2975	p.S992L	1.000	superfamily_Growth_fac_rcpt	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	124	0	0	95	30	24	-	-	-	A	113233667	G	A	113233667	3	1	310	1	0	0	0	0	1	0	0	0	15511	1294	45	2	7872	2	SVEP1	9	113233667	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3546157	113233667	27979764	106	34256										
RC3H2	0	genome.wustl.edu	37	chr9	125616341	125616341	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caaagcattggcctctctctGaagaagtaatgagttgctct	9	9	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	125616341	125616341	G	A	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	nonsense	c.3007	p.Q1003*	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	176	0	0	88	45	33.83	-	-	-	A	125616341	G	A	125616341	4	1	310	1	0	0	0	0	0	1	0	0	13250	1299	45	2	662	2	RC3H2	9	125616341	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	12382674	125616341	15597090	107	34257										
PKN3	0	genome.wustl.edu	37	chr9	131476875	131476875	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaagacccccttgggtgaaGagatgacacccccacccaag	10	14	0	5			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	131476875	131476875	G	T	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	nonsense	c.1516	p.E506*	0.941	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	49	0	0	34	8	19.05	-	-	-	T	131476875	G	T	131476875	4	4	310	1	0	0	0	0	0	1	0	0	12055	943	33	2	1562	2	PKN3	9	131476875	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	5860534	131476875	9736556	108	34258										
PKN3	0	genome.wustl.edu	37	chr9	131479161	131479161	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtgcctggtggtgacctcatGatgcagatccacgaggatgt	14	9	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	9	131479161	131479161	G	A	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	missense	c.1944	p.M648I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	94	0	0	56	19	25.33	-	-	-	A	131479161	G	A	131479161	3	1	310	1	0	0	0	0	1	0	0	0	12055	1290	45	2	2006	2	PKN3	9	131479161	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2286	131479161	9734270	109	34259										
KIF5B	0	genome.wustl.edu	37	chr10	32322814	32322814	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	taatttagcaatttcttcttCacactttcttctttcagcat	2	10	6	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	10	32322814	32322814	C	A	SNP	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	nonsense	c.1264	p.E422*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	398	0	0	287	82	22.22	-	-	-	A	32322814	C	A	32322814	4	1	310	1	0	0	0	0	0	1	0	0	8358	835	29	2	1683	2	KIF5B	10	32322814	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		32322814	103211933	110	34260										
ZNF22	0	genome.wustl.edu	37	chr10	45499194	45499194	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttcaaacagagctcaaatctCattcagcaccagagaattca	5	11	5	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	10	45499194	45499194	C	T	SNP	ZNF22	ENST00000298299	human	ensembl	69_37n	1	known	silent	c.378	p.L126	0.961	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF22	HGNC	ENSG00000165512	94	0	0	92	14	13.21	-	-	-	T	45499194	C	T	45499194	2	4	310	1	0	0	0	0	0	0	0	1	17870	813	29	2		2	ZNF22	10	45499194	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	13176380	45499194	90035553	111	34261										
PTEN	0	genome.wustl.edu	37	chr10	89692900	89692900	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	attcactgtaaagctggaaaGggacgaactggtgtaatgat	12	5	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	10	89692900	89692900	G	C	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.384	p.K128N	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	211	0	0	92	44	32.35	-	-	-	C	89692900	G	C	89692900	3	2	310	1	0	0	0	0	1	0	0	0	12818	991	35	4	402	4	PTEN	10	89692900	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	44193706	89692900	45841847	112	34262										
DMBT1	0	genome.wustl.edu	37	chr10	124380755	124380755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgtcggccccaggaaatgccCggtttggccagggctcagga	15	12	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	10	124380755	124380755	C	T	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.5467	p.R1823W	0.102	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	62	0	0	37	14	27.45	-	-	-	T	124380755	C	T	124380755	3	4	310	1	0	0	0	0	1	0	0	0	4613	643	23	1	5242	1	DMBT1	10	124380755	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	34687855	124380755	11153992	113	34263										
MUC2	0	genome.wustl.edu	37	chr11	1092240	1092240	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agcttggagcagctaggccaGaaggtgcagtgtgatgtctc	15	8	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	1092240	1092240	G	A	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	silent	c.4059	p.Q1353	0.545	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	148	0	0	92	30	24.59	-	-	-	A	1092240	G	A	1092240	2	1	310	1	0	0	0	0	0	0	0	1	10047	933	33	2		2	MUC2	11	1092240	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		1092240	133914276	114	34264										
FBXO3	0	genome.wustl.edu	37	chr11	33790504	33790504	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caatgtatcttcctacatcaGagtaagtatctatgaagaga	7	7	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	33790504	33790504	G	C	SNP	FBXO3	ENST00000265651	human	ensembl	69_37n	-1	known	missense	c.251	p.S84C	1.000	superfamily_F-box_dom_cyclin-like	pfam_ApaG_domain,pfam_F-box_dom_cyclin-like,superfamily_ApaG_domain,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cell_wall_assmbl_KNR4-like,pfscan_ApaG_domain,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO3	HGNC	ENSG00000110429	319	0	0	212	81	27.65	-	-	-	C	33790504	G	C	33790504	3	2	310	1	0	0	0	0	1	0	0	0	5785	942	33	2	1209	2	FBXO3	11	33790504	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	32698264	33790504	101216012	115	34265										
NUP160	0	genome.wustl.edu	37	chr11	47828648	47828648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tatttgccattaaagcaccaGagtctgttaattccagtact	6	9	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	47828648	47828648	G	C	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.2420	p.S807C	0.993	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	217	0	0	161	34	17.44	-	-	-	C	47828648	G	C	47828648	3	2	310	1	0	0	0	0	1	0	0	0	10830	942	33	2	1962	2	NUP160	11	47828648	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	14038144	47828648	87177868	116	34266										
OR4D10	0	genome.wustl.edu	37	chr11	59245488	59245488	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atacagacattttcatacttGaactactaatgatttccaac	3	9	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	59245488	59245488	G	C	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.586	p.E196Q	0.015	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	120	0	0	65	22	25.29	-	-	-	C	59245488	G	C	59245488	3	2	310	1	0	0	0	0	1	0	0	0	11127	1291	45	2	588	2	OR4D10	11	59245488	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	11416840	59245488	75761028	117	34267										
SIK3	0	genome.wustl.edu	37	chr11	116732606	116732606	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctgattttcacatgcagcctGaagaggtggagatggctgag	14	7	1	5			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	116732606	116732606	G	A	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	nonsense	c.2122	p.Q708*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	70	0	0	34	15	30.61	-	-	-	A	116732606	G	A	116732606	4	1	310	1	0	0	0	0	0	1	0	0	14408	1299	45	2	1871	2	SIK3	11	116732606	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	57487118	116732606	18273910	118	34268										
OR10G8	0	genome.wustl.edu	37	chr11	123901064	123901064	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acctgtgcctcccactgtatCgtggtcctttgcttctttgg	9	13	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	11	123901064	123901064	C	T	SNP	OR10G8	ENST00000431524	human	ensembl	69_37n	1	known	silent	c.735	p.I245	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10G8	HGNC	ENSG00000234560	162	0	0	49	32	39.51	-	-	-	T	123901064	C	T	123901064	2	4	310	1	0	0	0	0	0	0	0	1	10976	874	31	1		1	OR10G8	11	123901064	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	7168458	123901064	11105452	119	34269										
PIK3C2G	0	genome.wustl.edu	37	chr12	18499655	18499655	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	actgtaacagcttttatgcaGattttcagcctgtaaatgta	7	7	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	18499655	18499655	G	C	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	missense	c.1510	p.D504H	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	180	0	0	141	47	25	-	-	-	C	18499655	G	C	18499655	3	2	310	1	0	0	0	0	1	0	0	0	11985	942	33	2	1548	2	PIK3C2G	12	18499655	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		18499655	115352240	120	34270										
MRPS35	0	genome.wustl.edu	37	chr12	27877070	27877070	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgacagcactgattatgtttCatcaggaccatctgttcgga	9	9	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	27877070	27877070	C	T	SNP	MRPS35	ENST00000081029	human	ensembl	69_37n	1	known	missense	c.473	p.S158L	1.000	pfam_Ribosomal_S24/S35_mit	pfam_Ribosomal_S24/S35_mit	-	no_errors	MRPS35	HGNC	ENSG00000061794	130	0	0	83	23	21.5	-	-	-	T	27877070	C	T	27877070	3	4	310	1	0	0	0	0	1	0	0	0	9916	838	29	2	491	2	MRPS35	12	27877070	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	9377415	27877070	105974825	121	34271										
KRT84	0	genome.wustl.edu	37	chr12	52778990	52778990	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctgctgggactccaacccctCcaactctgtaaccaaagcca	6	17	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	52778990	52778990	C	G	SNP	KRT84	ENST00000257951	human	ensembl	69_37n	-1	known	missense	c.380	p.G127A	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849	70	0	0	57	10	14.93	-	-	-	G	52778990	C	G	52778990	3	3	310	1	0	0	0	0	1	0	0	0	8551	855	30	2	1458	2	KRT84	12	52778990	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	24901920	52778990	81072905	122	34272										
KRT71	0	genome.wustl.edu	37	chr12	52943869	52943869	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctcagctccgagtccagcctCaccctgtccccagacagcgt	8	19	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	52943869	52943869	C	T	SNP	KRT71	ENST00000267119	human	ensembl	69_37n	-1	known	silent	c.600	p.V200	0.940	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648	101	0	0	76	24	24	-	-	-	T	52943869	C	T	52943869	2	4	310	1	0	0	0	0	0	0	0	1	8537	813	29	2		2	KRT71	12	52943869	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	164879	52943869	80908026	123	34273										
ESYT1	0	genome.wustl.edu	37	chr12	56522358	56522358	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggtttcgtgctcttcggcctCgccctctacctgggctggcg	13	15	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	56522358	56522358	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	silent	c.255	p.L85	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	83	0	0	51	8	13.56	-	-	-	T	56522358	C	T	56522358	2	4	310	1	0	0	0	0	0	0	0	1	5301	871	31	1		1	ESYT1	12	56522358	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3578489	56522358	77329537	124	34274										
TMTC2	0	genome.wustl.edu	37	chr12	83289848	83289848	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atggatgctgtgcctctgctCaaaacagtttgtgactggag	12	8	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	83289848	83289848	C	T	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	silent	c.906	p.L302	0.930	pfam_DUF1736	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	101	0	0	86	28	24.56	-	-	-	T	83289848	C	T	83289848	2	4	310	1	0	0	0	0	0	0	0	1	16356	813	29	2		2	TMTC2	12	83289848	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	26767490	83289848	50562047	125	34275										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100451418	100451418	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttcttccaatatcatgctgtCaagtgaaatggtatccaatg	7	8	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	100451418	100451418	C	T	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.3355	p.D1119N	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	266	0	0	199	59	22.87	-	-	-	T	100451418	C	T	100451418	3	4	310	1	0	0	0	0	1	0	0	0	17066	826	29	2	1067	2	UHRF1BP1L	12	100451418	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	17161570	100451418	33400477	126	34276										
GNPTAB	0	genome.wustl.edu	37	chr12	102153831	102153831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gttgggatcatagtaggattCctgagttggtggaatattat	13	3	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	102153831	102153831	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.3226	p.E1076K	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	245	0	0	171	66	27.85	-	-	-	T	102153831	C	T	102153831	3	4	310	1	0	0	0	0	1	0	0	0	6597	864	30	2	568	2	GNPTAB	12	102153831	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1702413	102153831	31698064	127	34277										
FBXO21	0	genome.wustl.edu	37	chr12	117603392	117603392	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tagagatccagcgagtctctCaggagctggtatgactggtc	13	9	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	117603392	117603392	C	T	SNP	FBXO21	ENST00000550180	human	ensembl	69_37n	-1	novel	missense	c.874	p.E292K	0.872	NULL	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXO21	HGNC	ENSG00000135108	74	0	0	39	15	27.78	-	-	-	T	117603392	C	T	117603392	3	4	310	1	0	0	0	0	1	0	0	0	5779	813	29	2	678	2	FBXO21	12	117603392	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	15449561	117603392	16248503	128	34278										
GTF2H3	0	genome.wustl.edu	37	chr12	124144425	124144425	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gactacagggctgcttgcttCtgtcatcgaaatctcattga	9	10	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	124144425	124144425	C	T	SNP	GTF2H3	ENST00000543341	human	ensembl	69_37n	1	known	silent	c.768	p.F256	1.000	pfam_TF_Tfb4,tigrfam_TF_Tfb4	pfam_TF_Tfb4,tigrfam_TF_Tfb4	-	no_errors	GTF2H3	HGNC	ENSG00000111358	216	0	0	136	50	26.88	-	-	-	T	124144425	C	T	124144425	2	4	310	1	0	0	0	0	0	0	0	1	6915	912	32	2		2	GTF2H3	12	124144425	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6541033	124144425	9707470	129	34279										
TMEM132D	0	genome.wustl.edu	37	chr12	129563234	129563234	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtccagcacagtgatggtctTttcagcgaggatggtgtctg	14	8	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	12	129563234	129563234	T	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	nonsense	c.1960	p.K654*	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	66	0	0	39	10	20.41	-	-	-	A	129563234	T	A	129563234	4	1	310	1	0	0	0	0	0	1	0	0	16142	1850	64	5	1347	5	TMEM132D	12	129563234	Nonsense_Mutation	SNP	T	TCGA-AN-A0XW-01A-11D-A10G-09	5418809	129563234	4288661	130	34280										
MTMR6	0	genome.wustl.edu	37	chr13	25827981	25827981	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aatatgctcatggatctgaaGaagaaatgcttcactgaatt	8	6	3	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	25827981	25827981	G	A	SNP	MTMR6	ENST00000381801	human	ensembl	69_37n	-1	known	missense	c.1267	p.L423F	1.000	smart_Tyr_Pase_cat	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505	116	0	0	82	35	29.91	-	-	-	A	25827981	G	A	25827981	3	1	310	1	0	0	0	0	1	0	0	0	10019	942	33	2	614	2	MTMR6	13	25827981	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		25827981	89341897	131	34281										
FRY	0	genome.wustl.edu	37	chr13	32721440	32721440	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acaaagatcccaagatggctCgagttgcactggaatctctc	9	11	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	32721440	32721440	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	nonsense	c.1201	p.R401*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	164	0	0	81	45	35.71	-	-	-	T	32721440	C	T	32721440	4	4	310	1	0	0	0	0	0	1	0	0	6112	876	31	1	1247	1	FRY	13	32721440	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6893459	32721440	82448438	132	34282										
HTR2A	0	genome.wustl.edu	37	chr13	47409694	47409694	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gccgatcaggacaaagttatCatcggcgagtaagcaactcc	10	11	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	47409694	47409694	C	A	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	missense	c.694	p.D232Y	0.888	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	58	0	0	29	9	23.68	-	-	-	A	47409694	C	A	47409694	3	1	310	1	0	0	0	0	1	0	0	0	7495	826	29	2	725	2	HTR2A	13	47409694	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	14688254	47409694	67760184	133	34283										
PIBF1	0	genome.wustl.edu	37	chr13	73491243	73491244	+	Frame_Shift_Ins	INS	-	-	T													0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agatgaggctgaaagggttcINSttttttcctacggctatggt							TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	73491243	73491244	-	T	INS	PIBF1	ENST00000326291	human	ensembl	69_37n	1	known	frame_shift_ins	c.1669_1670	p.S559fs	1.000:1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535	299	0	0	121	54	30.86	-	-	-	T	73491244	-	T	73491243	7	5	310	1	0	1	1	0	0	0	0	0	11953	913	32	0	1715	0	PIBF1	13	73491243	Frame_Shift_Ins	INS	-	TCGA-AN-A0XW-01A-11D-A10G-09	26081549	73491243	41678635	134	34284										
FAM155A	0	genome.wustl.edu	37	chr13	108518200	108518200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gccttccttgagcaccacatCcagactgcagttcaaagtgt	8	13	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	108518200	108518200	C	T	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	missense	c.745	p.D249N	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	53	0	0	33	6	15.38	-	-	-	T	108518200	C	T	108518200	3	4	310	1	0	0	0	0	1	0	0	0	5505	855	30	2	643	2	FAM155A	13	108518200	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	35026957	108518200	6651678	135	34285										
MYO16	0	genome.wustl.edu	37	chr13	109777624	109777624	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cagacattgcccgggaaaatGaccggctccgtagtgaaatg	12	10	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	109777624	109777624	G	A	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.3634	p.D1212N	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	76	0	0	38	13	25.49	-	-	-	A	109777624	G	A	109777624	3	1	310	1	0	0	0	0	1	0	0	0	10136	1290	45	2	3748	2	MYO16	13	109777624	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1259424	109777624	5392254	136	34286										
RASA3	0	genome.wustl.edu	37	chr13	114781703	114781703	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcaaggttttctccgtctttCaacttcacagggtcgatttc	7	11	5	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	13	114781703	114781703	C	G	SNP	RASA3	ENST00000334062	human	ensembl	69_37n	-1	known	missense	c.1251	p.L417F	0.982	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,prints_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASA3	HGNC	ENSG00000185989	195	0	0	142	33	18.86	-	-	-	G	114781703	C	G	114781703	3	3	310	1	0	0	0	0	1	0	0	0	13145	825	29	2	1301	2	RASA3	13	114781703	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	5004079	114781703	388175	137	34287										
SLC22A17	0	genome.wustl.edu	37	chr14	23816808	23816808	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccccggcggccaaatcggtcCacggtgacccccaggaagac	12	17	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	23816808	23816808	C	T	SNP	SLC22A17	ENST00000206544	human	ensembl	69_37n	-1	known	silent	c.1077	p.V359	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096	15	0	0	18	4	18.18	-	-	-	T	23816808	C	T	23816808	2	4	310	1	0	0	0	0	0	0	0	1	14537	581	21	4		4	SLC22A17	14	23816808	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		23816808	83532732	138	34288										
GMFB	0	genome.wustl.edu	37	chr14	54947649	54947649	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aactcttccatcatcatgttGatatttataactatacacaa	2	9	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	54947649	54947649	G	A	SNP	GMFB	ENST00000358056	human	ensembl	69_37n	-1	known	nonsense	c.226	p.Q76*	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	-	no_errors	GMFB	HGNC	ENSG00000197045	195	1	0.51	168	27	13.85	-	-	-	A	54947649	G	A	54947649	4	1	310	1	0	0	0	0	0	1	0	0	6541	1299	45	2	214	2	GMFB	14	54947649	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	31130841	54947649	52401891	139	34289										
KTN1	0	genome.wustl.edu	37	chr14	56116507	56116507	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tttccaggtttcttttgcctCtctagttgaagaacttaaga	7	8	2	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	56116507	56116507	C	T	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.2381	p.S794F	0.999	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	330	0	0	283	47	14.24	-	-	-	T	56116507	C	T	56116507	3	4	310	1	0	0	0	0	1	0	0	0	8639	913	32	2	2463	2	KTN1	14	56116507	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1168858	56116507	51233033	140	34290										
KCNH5	0	genome.wustl.edu	37	chr14	63473099	63473099	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cctactgtttttcttgtacaGaagaacttcaaagcagtttg	7	8	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	63473099	63473099	G	A	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	silent	c.289	p.L97	1.000	pfam_PAS_fold,smart_PAC,pfscan_PAS-assoc_C,tigrfam_PAS	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	237	0	0	142	43	23.24	-	-	-	A	63473099	G	A	63473099	2	1	310	1	0	0	0	0	0	0	0	1	8089	933	33	2		2	KCNH5	14	63473099	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7356592	63473099	43876441	141	34291										
RDH11	0	genome.wustl.edu	37	chr14	68156953	68156953	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tagtctccgggccagttcctGggtgaagaggatgttggcta	15	8	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	68156953	68156953	G	A	SNP	RDH11	ENST00000381346	human	ensembl	69_37n	-1	known	nonsense	c.640	p.Q214*	0.495	pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH11	HGNC	ENSG00000072042	112	0	0	76	9	10.47	-	-	-	A	68156953	G	A	68156953	4	1	310	1	0	0	0	0	0	1	0	0	13273	1357	47	4	328	4	RDH11	14	68156953	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4683854	68156953	39192587	142	34292										
C14orf102	0	genome.wustl.edu	37	chr14	90778838	90778838	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cgtcacagcctgaatgtcctCaagccaaacaaagcgatgtc	8	13	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	90778838	90778838	C	G	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.457	p.E153Q	1.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	94	0	0	66	16	19.28	-	-	-	G	90778838	C	G	90778838	3	3	310	1	0	0	0	0	1	0	0	0	1747	835	29	2	3081	2	C14orf102	14	90778838	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	22621885	90778838	16570702	143	34293										
SERPINA11	0	genome.wustl.edu	37	chr14	94912879	94912879	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gacctggagagaagtcctctCatccacaaagaaactttcct	7	12	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	94912879	94912879	C	A	SNP	SERPINA11	ENST00000334708	human	ensembl	69_37n	-1	known	nonsense	c.706	p.E236*	0.299	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910	96	0	0	55	8	12.7	-	-	-	A	94912879	C	A	94912879	4	1	310	1	0	0	0	0	0	1	0	0	14176	835	29	2	574	2	SERPINA11	14	94912879	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4134041	94912879	12436661	144	34294										
RTL1	0	genome.wustl.edu	37	chr14	101347967	101347967	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aggatctggtcgatgggtatCatggccagcagctcttgccg	14	10	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	14	101347967	101347967	C	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.3159	p.M1053I	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	82	0	0	34	8	19.05	-	-	-	A	101347967	C	A	101347967	3	1	310	1	0	0	0	0	1	0	0	0	13810	826	29	2	921	2	RTL1	14	101347967	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6435088	101347967	6001573	145	34295										
GABRB3	0	genome.wustl.edu	37	chr15	26866582	26866582	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtcgggcacccatagctggtCagccactcgattgtcaagcg	12	13	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	26866582	26866582	C	T	SNP	GABRB3	ENST00000299267	human	ensembl	69_37n	-1	known	missense	c.340	p.D114N	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206	125	0	0	65	24	26.97	-	-	-	T	26866582	C	T	26866582	3	4	310	1	0	0	0	0	1	0	0	0	6217	826	29	2	1105	2	GABRB3	15	26866582	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		26866582	75664810	146	34296										
NDNL2	0	genome.wustl.edu	37	chr15	29561244	29561244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cgcacaaagtcctcagtaatGagtttctttggatctccgaa	8	10	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	29561244	29561244	G	A	SNP	NDNL2	ENST00000332303	human	ensembl	69_37n	-1	known	silent	c.666	p.L222	0.129	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDNL2	HGNC	ENSG00000185115	47	0	0	37	6	13.95	-	-	-	A	29561244	G	A	29561244	2	1	310	1	0	0	0	0	0	0	0	1	10320	1277	45	2		2	NDNL2	15	29561244	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2694662	29561244	72970148	147	34297										
RYR3	0	genome.wustl.edu	37	chr15	33928729	33928729	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aaaggctctgaacttgccttCgctgactacgagattgagaa	10	9	1	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	33928729	33928729	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.3534	p.F1178	0.827	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	93	0	0	44	15	25.42	-	-	-	T	33928729	C	T	33928729	2	4	310	1	0	0	0	0	0	0	0	1	13856	883	31	1		1	RYR3	15	33928729	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4367485	33928729	68602663	148	34298										
MGA	0	genome.wustl.edu	37	chr15	42057208	42057208	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtagctgtttctcctgatctCttagaatctgatcttaagcc	7	10	4	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	42057208	42057208	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	silent	c.7869	p.L2623	0.970	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	111	0	0	74	18	19.57	-	-	-	G	42057208	C	G	42057208	2	3	310	1	0	0	0	0	0	0	0	1	9611	900	32	2		2	MGA	15	42057208	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	8128479	42057208	60474184	149	34299										
MFAP1	0	genome.wustl.edu	37	chr15	44105315	44105315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cagggatcgcttgttctcttCcagctcttttttggtttcct	8	11	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	44105315	44105315	C	G	SNP	MFAP1	ENST00000267812	human	ensembl	69_37n	-1	known	missense	c.757	p.E253Q	1.000	pfam_MFAP1_C	pfam_MFAP1_C	-	no_errors	MFAP1	HGNC	ENSG00000140259	296	0	0	269	32	10.63	-	-	-	G	44105315	C	G	44105315	3	3	310	1	0	0	0	0	1	0	0	0	9584	864	30	2	578	2	MFAP1	15	44105315	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	2048107	44105315	58426077	150	34300										
SEMA6D	0	genome.wustl.edu	37	chr15	48059233	48059233	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttgttcctttaattcttttaGaaattttgcctacttcaact	3	8	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	48059233	48059233	G	C	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	1	known	splice_site	c.1709-1	e16-1	1.000	-	-	-	no_errors	SEMA6D	HGNC	ENSG00000137872	278	0	0	226	59	20.7	-	-	-	C	48059233	G	C	48059233	5	2	310	1	0	0	0	0	0	0	1	0	14130	956	33	2	1813	2	SEMA6D	15	48059233	Splice_Site	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3953918	48059233	54472159	151	34301										
UACA	0	genome.wustl.edu	37	chr15	70959869	70959869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttccatttcatgagacttctCaatgagaactgtcttatctc	5	10	4	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	70959869	70959869	C	G	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.3154	p.E1052Q	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	273	0	0	185	81	30.45	-	-	-	G	70959869	C	G	70959869	3	3	310	1	0	0	0	0	1	0	0	0	16921	835	29	2	1112	2	UACA	15	70959869	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	22900636	70959869	31571523	152	34302										
PARP6	0	genome.wustl.edu	37	chr15	72545819	72545819	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aggggatccaacttgtccatCtgtttcttgatttccaaata	7	9	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	72545819	72545819	C	G	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.1218	p.Q406H	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	146	0	0	95	19	16.67	-	-	-	G	72545819	C	G	72545819	3	3	310	1	0	0	0	0	1	0	0	0	11537	912	32	2	710	2	PARP6	15	72545819	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1585950	72545819	29985573	153	34303										
PML	0	genome.wustl.edu	37	chr15	74324915	74324915	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	attttcccaactttgcagccCgaggaggcagagagagtgaa	12	9	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	15	74324915	74324915	C	T	SNP	PML	ENST00000565239	human	ensembl	69_37n	1	novel	nonsense	c.571	p.R191*	0.028	pfam_DUF3583	pfam_DUF3583	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PML	HGNC	ENSG00000140464	17	0	0	13	5	27.78	-	-	-	T	74324915	C	T	74324915	4	4	310	1	0	0	0	0	0	1	0	0	12209	639	23	1	1275	1	PML	15	74324915	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1779096	74324915	28206477	154	34304										
CLUAP1	0	genome.wustl.edu	37	chr16	3558457	3558457	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcaacaagttcaagtttgatCttggctcaaaggtaaggaca	9	7	4	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	16	3558457	3558457	C	G	SNP	CLUAP1	ENST00000576634	human	ensembl	69_37n	1	known	missense	c.388	p.L130V	0.999	pfam_Clusterin-associated_protein-1	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351	120	0	0	96	23	19.33	-	-	-	G	3558457	C	G	3558457	3	3	310	1	0	0	0	0	1	0	0	0	3599	913	32	2	402	2	CLUAP1	16	3558457	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		3558457	86796296	155	34305										
ABAT	0	genome.wustl.edu	37	chr16	8868872	8868872	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	accttcagcaagaagatgatGactgggggcttcttccacaa	10	10	2	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	16	8868872	8868872	G	A	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	missense	c.1080	p.M360I	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	47	0	0	27	5	15.62	-	-	-	A	8868872	G	A	8868872	3	1	310	1	0	0	0	0	1	0	0	0	27	1290	45	2	1126	2	ABAT	16	8868872	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	5310415	8868872	81485881	156	34306										
DNAH3	0	genome.wustl.edu	37	chr16	21078621	21078621	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tacctggggaagaatagtctCttcttctccaagtaatcatt	7	9	4	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	16	21078621	21078621	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.3501	p.K1167	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	129	0	0	91	13	12.5	-	-	-	T	21078621	C	T	21078621	2	4	310	1	0	0	0	0	0	0	0	1	4639	912	32	2		2	DNAH3	16	21078621	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	12209749	21078621	69276132	157	34307										
ZKSCAN2	0	genome.wustl.edu	37	chr16	25251806	25251806	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttgagaagtctgtagggtctCttccccacaaaaggcctctg	10	11	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	16	25251806	25251806	C	T	SNP	ZKSCAN2	ENST00000328086	human	ensembl	69_37n	-1	known	silent	c.2235	p.K745	0.988	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592	118	1	0.84	68	19	21.84	-	-	-	T	25251806	C	T	25251806	2	4	310	1	0	0	0	0	0	0	0	1	17783	912	32	2		2	ZKSCAN2	16	25251806	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4173185	25251806	65102947	158	34308										
HYDIN	0	genome.wustl.edu	37	chr16	70969882	70969882	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tttgctgcttgagatttcttCatggggggctcctccttaat	10	9	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	16	70969882	70969882	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.7128	p.M2376I	0.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	39	0	0	25	7	21.88	-	-	-	T	70969882	C	T	70969882	3	4	310	1	0	0	0	0	1	0	0	0	7521	826	29	2	8402	2	HYDIN	16	70969882	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	45718076	70969882	19384871	159	34309										
TRAPPC1	0	genome.wustl.edu	37	chr17	7834854	7834854	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gggacatcttgctgacaaacGagcggatagagaagagcatc	13	8	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	7834854	7834854	G	C	SNP	TRAPPC1	ENST00000303731	human	ensembl	69_37n	-1	known	missense	c.140	p.S47W	1.000	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043	41	0	0	16	4	20	-	-	-	C	7834854	G	C	7834854	3	2	310	1	0	0	0	0	1	0	0	0	16552	1059	37	3	309	3	TRAPPC1	17	7834854	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		7834854	73360356	160	34310										
MYH4	0	genome.wustl.edu	37	chr17	10366411	10366411	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	caaagatgtgtcttaccaatGagctctggtttcttattgga	9	7	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	10366411	10366411	G	C	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.900	p.L300	0.408	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	285	0	0	133	45	25.28	-	-	-	C	10366411	G	C	10366411	2	2	310	1	0	0	0	0	0	0	0	1	10109	1277	45	2		2	MYH4	17	10366411	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2531557	10366411	70828799	161	34311										
DNAH9	0	genome.wustl.edu	37	chr17	11522991	11522991	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttcaggacagaagggagaatCtccacacttacttcaaagag	9	9	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	11522991	11522991	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.1243	p.L415V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	95	0	0	41	20	32.79	-	-	-	G	11522991	C	G	11522991	3	3	310	1	0	0	0	0	1	0	0	0	4643	913	32	2	1265	2	DNAH9	17	11522991	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1156580	11522991	69672219	162	34312										
TOP3A	0	genome.wustl.edu	37	chr17	18205698	18205698	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gagctgctctgccagcacctCaggaaaaatcctctgaagcc	9	14	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	18205698	18205698	C	A	SNP	TOP3A	ENST00000321105	human	ensembl	69_37n	-1	known	nonsense	c.694	p.E232*	0.981	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302	47	0	0	25	14	35.9	-	-	-	A	18205698	C	A	18205698	4	1	310	1	0	0	0	0	0	1	0	0	16463	835	29	2	2363	2	TOP3A	17	18205698	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6682707	18205698	62989512	163	34313										
NF1	0	genome.wustl.edu	37	chr17	29667654	29667654	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttagatagtctccgtatattCaatgacaaggtaagcaaact	7	7	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	29667654	29667654	C	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.7053	p.F2351L	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	117	0	0	56	24	30	-	-	-	G	29667654	C	G	29667654	3	3	310	1	0	0	0	0	1	0	0	0	10428	825	29	2	7300	2	NF1	17	29667654	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	11461956	29667654	51527556	164	34314										
NBR1	0	genome.wustl.edu	37	chr17	41362092	41362092	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctggtacagccaacgctattGaggagtgaccttgtattaaa	10	8	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	41362092	41362092	G	A	SNP	NBR1	ENST00000341165	human	ensembl	69_37n	1	known	silent	c.2900	p.*967	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554	63	0	0	27	13	32.5	-	-	-	A	41362092	G	A	41362092	2	1	310	1	0	0	0	0	0	0	0	1	10272	1285	45	2		2	NBR1	17	41362092	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	11694438	41362092	39833118	165	34315										
RSAD1	0	genome.wustl.edu	37	chr17	48557311	48557311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acacggtggctgctgtcctgGaggctgtggcacaggcagcc	16	12	0	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	48557311	48557311	G	C	SNP	RSAD1	ENST00000258955	human	ensembl	69_37n	1	known	missense	c.340	p.E114Q	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	pfam_HemN_C_dom,pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	-	no_errors	RSAD1	HGNC	ENSG00000136444	52	0	0	164	23	12.23	-	-	-	C	48557311	G	C	48557311	3	2	310	1	0	0	0	0	1	0	0	0	13780	1175	41	2	350	2	RSAD1	17	48557311	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	7195219	48557311	32637899	166	34316										
CACNA1G	0	genome.wustl.edu	37	chr17	48650139	48650139	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccagtactacaccaactgctCagcgggggagcacaacccct	9	16	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	48650139	48650139	C	G	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	nonsense	c.971	p.S324*	0.993	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	12	0	0	64	11	14.67	-	-	-	G	48650139	C	G	48650139	4	3	310	1	0	0	0	0	0	1	0	0	2569	838	29	2	993	2	CACNA1G	17	48650139	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	92828	48650139	32545071	167	34317										
LPO	0	genome.wustl.edu	37	chr17	56321423	56321423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aggtccaagtcaacaaggccTtcctggactcccgaaccagg	10	14	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	56321423	56321423	T	G	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	missense	c.145	p.F49V	1.000	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	36	0	0	70	17	19.54	-	-	-	G	56321423	T	G	56321423	3	3	310	1	0	0	0	0	1	0	0	0	8988	1609	56	5	151	5	LPO	17	56321423	Missense_Mutation	SNP	T	TCGA-AN-A0XW-01A-11D-A10G-09	7671284	56321423	24873787	168	34318										
MED13	0	genome.wustl.edu	37	chr17	60040145	60040145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agtactcttgatatgaggagGaagagtctggaccatttcta	11	6	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	60040145	60040145	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.5032	p.P1678S	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	140	0	0	108	17	13.6	-	-	-	A	60040145	G	A	60040145	3	1	310	1	0	0	0	0	1	0	0	0	9501	1174	41	2	1532	2	MED13	17	60040145	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3718722	60040145	21155065	169	34319										
TTYH2	0	genome.wustl.edu	37	chr17	72249933	72249933	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggtaggaacccacgctacgaGaacgtgccactaatcgggag	13	11	0	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	72249933	72249933	G	C	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	missense	c.1485	p.E495D	1.000	NULL	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	38	0	0	25	5	16.67	-	-	-	C	72249933	G	C	72249933	3	2	310	1	0	0	0	0	1	0	0	0	16837	933	33	2	1535	2	TTYH2	17	72249933	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	12209788	72249933	8945277	170	34320										
NAT9	0	genome.wustl.edu	37	chr17	72767888	72767888	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agggctctgccgacccatctCtgtaaggcttctcttccacg	9	15	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	72767888	72767888	C	T	SNP	NAT9	ENST00000357814	human	ensembl	69_37n	-1	known	missense	c.599	p.R200K	0.480	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	24	0	0	11	13	54.17	-	-	-	T	72767888	C	T	72767888	3	4	310	1	0	0	0	0	1	0	0	0	10254	913	32	2	28	2	NAT9	17	72767888	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	517955	72767888	8427322	171	34321										
EVPL	0	genome.wustl.edu	37	chr17	74004251	74004251	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cttggtggaaaggttggtctCtcgcgtctgggtctcctggc	15	10	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	17	74004251	74004251	C	G	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.5035	p.E1679Q	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	23	0	0	10	5	33.33	-	-	-	G	74004251	C	G	74004251	3	3	310	1	0	0	0	0	1	0	0	0	5329	922	32	2	1070	2	EVPL	17	74004251	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1236363	74004251	7190959	172	34322										
PTPN2	0	genome.wustl.edu	37	chr18	12836858	12836858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggcattaatataatcattctCagcattttgcagtttaacac	5	8	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	18	12836858	12836858	C	G	SNP	PTPN2	ENST00000309660	human	ensembl	69_37n	-1	known	missense	c.193	p.E65Q	1.000	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354	304	0	0	158	48	23.19	-	-	-	G	12836858	C	G	12836858	3	3	310	1	0	0	0	0	1	0	0	0	12866	835	29	2	1108	2	PTPN2	18	12836858	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		12836858	65240390	173	34323										
NPC1	0	genome.wustl.edu	37	chr18	21127971	21127971	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	acacccatgagtgactcactCtttttcccaggcctgggccc	8	16	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	18	21127971	21127971	C	G	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.1756	p.E586Q	1.000	pfam_Patched,tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	87	0	0	64	29	31.18	-	-	-	G	21127971	C	G	21127971	3	3	310	1	0	0	0	0	1	0	0	0	10642	927	32	2	2140	2	NPC1	18	21127971	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	8291113	21127971	56949277	174	34324										
INSR	0	genome.wustl.edu	37	chr19	7163183	7163183	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gggatgatgagttagacactGagattggatccaggggcaca	15	6	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	7163183	7163183	G	A	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.1889	p.S630L	0.996	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	133	0	0	78	23	22.77	-	-	-	A	7163183	G	A	7163183	3	1	310	1	0	0	0	0	1	0	0	0	7827	1294	45	2	2315	2	INSR	19	7163183	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		7163183	51965800	175	34325										
DNMT1	0	genome.wustl.edu	37	chr19	10260162	10260162	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttttcggagggggctttgtaGatgactttcactttgctgtg	13	6	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	10260162	10260162	G	A	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	silent	c.2553	p.I851	0.026	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	58	0	0	56	9	13.85	-	-	-	A	10260162	G	A	10260162	2	1	310	1	0	0	0	0	0	0	0	1	4710	932	33	2		2	DNMT1	19	10260162	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	3096979	10260162	48868821	176	34326										
ZNF700	0	genome.wustl.edu	37	chr19	12059255	12059255	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agaagttggcataggtaactCatcttttaatatgagcatca	8	6	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	12059255	12059255	C	G	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	nonsense	c.416	p.S139*	0.028	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	182	0	0	239	34	12.45	-	-	-	G	12059255	C	G	12059255	4	3	310	1	0	0	0	0	0	1	0	0	18200	838	29	2	430	2	ZNF700	19	12059255	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1799093	12059255	47069728	177	34327										
OR7C1	0	genome.wustl.edu	37	chr19	14910073	14910073	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctcttcatgtccgtgttcctCaggctgtagatgaaggggtt	12	9	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	14910073	14910073	C	G	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	silent	c.876	p.L292	0.420	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	56	0	0	56	11	16.42	-	-	-	G	14910073	C	G	14910073	2	3	310	1	0	0	0	0	0	0	0	1	11290	813	29	2		2	OR7C1	19	14910073	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	2850818	14910073	44218910	178	34328										
ZNF254	0	genome.wustl.edu	37	chr19	24309129	24309129	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tcttttcaaaaagcaatactGagaagatatggaaaatatgg	8	4	2	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	24309129	24309129	G	A	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	silent	c.327	p.L109	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	175	0	0	171	34	16.59	-	-	-	A	24309129	G	A	24309129	2	1	310	1	0	0	0	0	0	0	0	1	17894	1277	45	2		2	ZNF254	19	24309129	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	9399056	24309129	34819854	179	34329										
CLC	0	genome.wustl.edu	37	chr19	40225039	40225039	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atactcacggctgttcatgaCcacacgacgaccaaagcaca	7	14	2	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	40225039	40225039	C	G	SNP	CLC	ENST00000221804	human	ensembl	69_37n	-1	known	missense	c.187	p.V63L	0.002	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	CLC	HGNC	ENSG00000105205	97	0	0	79	21	21	-	-	-	G	40225039	C	G	40225039	3	3	310	1	0	0	0	0	1	0	0	0	3486	507	18	4	249	4	CLC	19	40225039	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	15915910	40225039	18903944	180	34330										
CYP2A13	0	genome.wustl.edu	37	chr19	41601698	41601698	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttttggagaaggcctggccaGaatggagctctttctcttct	11	9	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	41601698	41601698	G	A	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.1337	p.R446K	0.981	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	106	0	0	92	19	17.12	-	-	-	A	41601698	G	A	41601698	3	1	310	1	0	0	0	0	1	0	0	0	4192	942	33	2	1371	2	CYP2A13	19	41601698	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1376659	41601698	17527285	181	34331										
CIC	0	genome.wustl.edu	37	chr19	42791541	42791541	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	aaacgtcggacccagtccctCagtgccctacccaaggaacg	9	16	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	42791541	42791541	C	G	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	silent	c.522	p.L174	0.998	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	36	0	0	27	6	18.18	-	-	-	G	42791541	C	G	42791541	2	3	310	1	0	0	0	0	0	0	0	1	3453	813	29	2		2	CIC	19	42791541	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1189843	42791541	16337442	182	34332										
ZNF224	0	genome.wustl.edu	37	chr19	44611829	44611829	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttcattcccatcagagagttCacactggagaaaagccatac	7	11	3	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	44611829	44611829	C	G	SNP	ZNF224	ENST00000336976	human	ensembl	69_37n	1	known	missense	c.1516	p.H506D	0.993	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680	111	0	0	168	24	12.5	-	-	-	G	44611829	C	G	44611829	3	3	310	1	0	0	0	0	1	0	0	0	17874	826	29	2	1530	2	ZNF224	19	44611829	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	1820288	44611829	14517154	183	34333										
PLEKHA4	0	genome.wustl.edu	37	chr19	49348692	49348692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggaagcccgggagaccctcgGagacccaagacctggaaaga	14	12	0	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	49348692	49348692	G	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	missense	c.1678	p.P560S	0.997	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	70	0	0	56	15	21.13	-	-	-	A	49348692	G	A	49348692	3	1	310	1	0	0	0	0	1	0	0	0	12132	1174	41	2	681	2	PLEKHA4	19	49348692	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4736863	49348692	9780291	184	34334										
ZNF677	0	genome.wustl.edu	37	chr19	53740966	53740966	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ttctctccagtatgcatcctCtgatgacttgcaagatttga	7	10	2	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	53740966	53740966	C	G	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	missense	c.1014	p.Q338H	0.298	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	206	0	0	172	36	17.31	-	-	-	G	53740966	C	G	53740966	3	3	310	1	0	0	0	0	1	0	0	0	18180	912	32	2	744	2	ZNF677	19	53740966	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	4392274	53740966	5388017	185	34335										
LAIR1	0	genome.wustl.edu	37	chr19	54871673	54871673	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccggggagtccgggcctccaGaggtttctgtaaacaggggc	16	11	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	54871673	54871673	G	C	SNP	LAIR1	ENST00000391742	human	ensembl	69_37n	-1	known	missense	c.371	p.S124C	0.000	NULL	smart_Ig_sub	-	no_errors	LAIR1	HGNC	ENSG00000167613	108	0	0	78	14	15.22	-	-	-	C	54871673	G	C	54871673	3	2	310	1	0	0	0	0	1	0	0	0	8656	942	33	2	520	2	LAIR1	19	54871673	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1130707	54871673	4257310	186	34336										
ZNF304	0	genome.wustl.edu	37	chr19	57868151	57868151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gaaatttcacactggaaaaaGacactatacatgcagtgaat	7	7	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	19	57868151	57868151	G	C	SNP	ZNF304	ENST00000443917	human	ensembl	69_37n	1	known	missense	c.1055	p.R352T	0.004	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF304	HGNC	ENSG00000131845	131	0	0	106	32	23.19	-	-	-	C	57868151	G	C	57868151	3	2	310	1	0	0	0	0	1	0	0	0	17929	942	33	2	924	2	ZNF304	19	57868151	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	2996478	57868151	1260832	187	34337										
SLC4A11	0	genome.wustl.edu	37	chr20	3210899	3210899	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gaagagggcgatgatctcctCcgtcgacctgccaggaggcc	14	13	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	20	3210899	3210899	C	G	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.1552	p.E518Q	0.999	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	10	0	0	13	4	23.53	-	-	-	G	3210899	C	G	3210899	3	3	310	1	0	0	0	0	1	0	0	0	14741	864	30	2	1236	2	SLC4A11	20	3210899	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		3210899	59814621	188	34338										
CEP250	0	genome.wustl.edu	37	chr20	34082384	34082384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agtctcagctggtggcccagGatgactcccagaggctggtg	15	11	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	20	34082384	34082384	G	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.3067	p.D1023N	0.104	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	98	0	0	70	10	12.5	-	-	-	A	34082384	G	A	34082384	3	1	310	1	0	0	0	0	1	0	0	0	3281	1174	41	2	3149	2	CEP250	20	34082384	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	30871485	34082384	28943136	189	34339										
IFNAR1	0	genome.wustl.edu	37	chr21	34717589	34717589	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ccaccagaaaatatagaagtCagtgtccaaaatcagaacta	6	9	2	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	21	34717589	34717589	C	T	SNP	IFNAR1	ENST00000270139	human	ensembl	69_37n	1	known	silent	c.711	p.V237	0.000	superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166	288	0	0	170	61	26.41	-	-	-	T	34717589	C	T	34717589	2	4	310	1	0	0	0	0	0	0	0	1	7598	813	29	2		2	IFNAR1	21	34717589	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09		34717589	13412306	190	34340										
TTC3	0	genome.wustl.edu	37	chr21	38516840	38516840	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tttagatttctagaagctctCaatcactttgagaaagcaag	7	7	3	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	21	38516840	38516840	C	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	silent	c.1788	p.L596	0.578	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	222	0	0	130	43	24.86	-	-	-	T	38516840	C	T	38516840	2	4	310	1	0	0	0	0	0	0	0	1	16794	813	29	2		2	TTC3	21	38516840	Silent	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	3799251	38516840	9613055	191	34341										
PRMT2	0	genome.wustl.edu	37	chr21	48080771	48080771	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agcagttaaggagtttttttCaaagcccaagtataaccaca	7	8	1	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	21	48080771	48080771	C	G	SNP	PRMT2	ENST00000355680	human	ensembl	69_37n	1	known	nonsense	c.857	p.S286*	0.998	pfam_Arg_MeTrfase	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	194	0	0	138	42	23.33	-	-	-	G	48080771	C	G	48080771	4	3	310	1	0	0	0	0	0	1	0	0	12618	838	29	2	883	2	PRMT2	21	48080771	Nonsense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	9563931	48080771	49124	192	34342										
CABIN1	0	genome.wustl.edu	37	chr22	24515498	24515498	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agagaggggacctcccagggGagccagtggccttcccccag	15	14	0	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	24515498	24515498	G	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	nonsense	c.4465	p.E1489*	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	9	0	0	13	4	23.53	-	-	-	T	24515498	G	T	24515498	4	4	310	1	0	0	0	0	0	1	0	0	2553	1175	41	2	4571	2	CABIN1	22	24515498	Nonsense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09		24515498	26789068	193	34343										
PES1	0	genome.wustl.edu	37	chr22	30975192	30975192	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctccttttctgaaccagcctCtgcatcttcctcctcctcct	3	19	3	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	30975192	30975192	C	T	SNP	PES1	ENST00000354694	human	ensembl	69_37n	-1	known	missense	c.1453	p.E485K	0.985	NULL	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029	109	0	0	88	16	15.38	-	-	-	T	30975192	C	T	30975192	3	4	310	1	0	0	0	0	1	0	0	0	11806	922	32	2	325	2	PES1	22	30975192	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6459694	30975192	20329374	194	34344										
DRG1	0	genome.wustl.edu	37	chr22	31822619	31822619	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	agagtttatatcccctgtatCtatgtgttaaataagattga	7	5	1	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	31822619	31822619	C	G	SNP	DRG1	ENST00000331457	human	ensembl	69_37n	1	known	missense	c.732	p.I244M	0.998	NULL	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG1	HGNC	ENSG00000185721	324	0	0	247	57	18.75	-	-	-	G	31822619	C	G	31822619	3	3	310	1	0	0	0	0	1	0	0	0	4796	903	32	2	758	2	DRG1	22	31822619	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	847427	31822619	19481947	195	34345										
APOL2	0	genome.wustl.edu	37	chr22	36624084	36624084	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cgaggagggtcaggatgccaGaggtagtgccaacagagttg	17	7	1	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	36624084	36624084	G	C	SNP	APOL2	ENST00000249066	human	ensembl	69_37n	-1	known	missense	c.380	p.S127C	0.900	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	48	0	0	24	10	29.41	-	-	-	C	36624084	G	C	36624084	3	2	310	1	0	0	0	0	1	0	0	0	808	942	33	2	637	2	APOL2	22	36624084	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4801465	36624084	14680482	196	34346										
RAC2	0	genome.wustl.edu	37	chr22	37628023	37628023	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ctgacgagggagaagcagatGaggaagacgtcctggggaca	17	7	0	5			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	37628023	37628023	G	A	SNP	RAC2	ENST00000249071	human	ensembl	69_37n	-1	known	silent	c.237	p.L79	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC2	HGNC	ENSG00000128340	43	0	0	19	6	24	-	-	-	A	37628023	G	A	37628023	2	1	310	1	0	0	0	0	0	0	0	1	13058	1277	45	2		2	RAC2	22	37628023	Silent	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	1003939	37628023	13676543	197	34347										
TCF20	0	genome.wustl.edu	37	chr22	42610881	42610881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gtgacacaccgccaaggccaGagtgctgtgcttgaaactgg	13	11	0	3			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	22	42610881	42610881	G	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.431	p.S144C	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	29	0	0	21	4	16	-	-	-	C	42610881	G	C	42610881	3	2	310	1	0	0	0	0	1	0	0	0	15785	942	33	2	5489	2	TCF20	22	42610881	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4982858	42610881	8693685	198	34348										
KAL1	0	genome.wustl.edu	37	chrX	8591691	8591691	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	tgtttcctcaggtcccctgaTtccttgcagggctccaggca	10	14	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	8591691	8591691	T	G	SNP	KAL1	ENST00000262648	human	ensembl	69_37n	-1	known	missense	c.276	p.E92D	0.007	NULL	pfam_Fibronectin_type3,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_4-disulphide_core	-	no_errors	KAL1	HGNC	ENSG00000011201	219	0	0	118	44	27.16	-	-	-	G	8591691	T	G	8591691	3	3	310	1	0	0	0	0	1	0	0	0	8028	1490	52	5	1814	5	KAL1	23	8591691	Missense_Mutation	SNP	T	TCGA-AN-A0XW-01A-11D-A10G-09		8591691	146678869	199	34349										
TLR8	0	genome.wustl.edu	37	chrX	12938975	12938975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	taacagataagtataacctgGaaagcaagtccctggtagaa	9	7	0	2			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	12938975	12938975	G	A	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.1816	p.E606K	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	95	0	0	73	10	12.05	-	-	-	A	12938975	G	A	12938975	3	1	310	1	0	0	0	0	1	0	0	0	16052	1175	41	2	1822	2	TLR8	23	12938975	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	4347284	12938975	142331585	200	34350										
GPR64	0	genome.wustl.edu	37	chrX	19027881	19027881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gttcagctgtaggccaatgtCatccactactttcagcaatc	7	12	3	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	19027881	19027881	C	T	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.1285	p.D429N	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	211	0	0	124	42	25.3	-	-	-	T	19027881	C	T	19027881	3	4	310	1	0	0	0	0	1	0	0	0	6755	826	29	2	1816	2	GPR64	23	19027881	Missense_Mutation	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	6088906	19027881	136242679	201	34351										
HUWE1	0	genome.wustl.edu	37	chrX	53661226	53661226	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	gcaacattctgcaagtccaaAgccattctcctttccacccc	4	17	2	0			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	53661226	53661226	A	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.529	p.F177I	1.000	pfam_E3_Ub_ligase_DUF908,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	213	0	0	131	57	30.32	-	-	-	T	53661226	A	T	53661226	3	4	310	1	0	0	0	0	1	0	0	0	7515	72	3	5	12903	5	HUWE1	23	53661226	Missense_Mutation	SNP	A	TCGA-AN-A0XW-01A-11D-A10G-09	34633345	53661226	101609334	202	34352										
KIF4A	0	genome.wustl.edu	37	chrX	69615617	69615617	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	atagaaagatcctggctcaaGatgtggctcaactcaaagaa	9	8	3	4			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	69615617	69615617	G	C	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.2329	p.D777H	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	109	0	0	83	25	23.15	-	-	-	C	69615617	G	C	69615617	3	2	310	1	0	0	0	0	1	0	0	0	8355	942	33	2	2407	2	KIF4A	23	69615617	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	15954391	69615617	85654943	203	34353										
PNCK	0	genome.wustl.edu	37	chrX	152937598	152937598	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	cacagttccatggccaggtaGaggtgggaagggctctcgtg	16	9	1	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	152937598	152937598	G	A	SNP	PNCK	ENST00000433470	human	ensembl	69_37n	-1	known	missense	c.278	p.S93F	0.976	NULL	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	-	no_errors	PNCK	HGNC	ENSG00000130822	29	0	0	16	7	30.43	-	-	-	A	152937598	G	A	152937598	3	1	310	1	0	0	0	0	1	0	0	0	12219	929	33	2	805	2	PNCK	23	152937598	Missense_Mutation	SNP	G	TCGA-AN-A0XW-01A-11D-A10G-09	83321981	152937598	2332962	204	34354										
SLC6A8	0	genome.wustl.edu	37	chrX	152958473	152958473	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.682926829268293	140	5.85507474042424e-59	4.11832426290294	4.37618894319412	3.84899893015436	0.201610385940467	0.776190476190475	106	ggaggtggtgccacagcctcCgctgagcagcctggcccccc	14	17	0	1			TCGA-AN-A0XW-01A-11D-A10G-09	TCGA-AN-A0XW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	200dba9e-201b-4634-a2cf-666e1f6710dc	42b25d03-4d22-4b23-82a5-4369aa21c4a1	X	152958473	152958473	C	T	SNP	SLC6A8	ENST00000485324	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC6A8	HGNC	ENSG00000130821	27	0	0	22	6	21.43	-	-	-	T	152958473	C	T	152958473	1	4	310	0	1	0	0	0	0	0	0	0	14779	667	23	1		1	SLC6A8	23	152958473	RNA	SNP	C	TCGA-AN-A0XW-01A-11D-A10G-09	20875	152958473	2312087	205	34355										
MCOLN3	0	genome.wustl.edu	37	chr1	85491733	85491733	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	atttgatcagaaacagaaacTtccttcttataatggaggag	8	6	2	3			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	1	85491733	85491733	T	G	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.984	p.E328D	0.671	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	147	0	0	97	23	19.17	-	-	-	G	85491733	T	G	85491733	3	3	311	1	0	0	0	0	1	0	0	0	9468	1606	56	5	697	5	MCOLN3	1	85491733	Missense_Mutation	SNP	T	TCGA-AO-A03L-01A-41W-A071-09		85491733	163758888	1	34356										
PYHIN1	0	genome.wustl.edu	37	chr1	158912143	158912143	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gaagatcaatattcttcacaAacaaacttcaggatatattg	5	7	4	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	1	158912143	158912143	A	T	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.956	p.K319I	0.000	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	110	0	0	87	11	11.22	-	-	-	T	158912143	A	T	158912143	3	4	311	1	0	0	0	0	1	0	0	0	12948	14	1	5	970	5	PYHIN1	1	158912143	Missense_Mutation	SNP	A	TCGA-AO-A03L-01A-41W-A071-09	73420410	158912143	90338478	2	34357										
PRRX1	0	genome.wustl.edu	37	chr1	170695522	170695522	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	cccaccgattatctctcctgGgggacagcgtctccgtacag	10	15	2	0			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	1	170695522	170695522	G	A	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	nonsense	c.579	p.W193*	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	130	0	0	94	27	22.31	-	-	-	A	170695522	G	A	170695522	4	1	311	1	0	0	0	0	0	1	0	0	12692	1241	43	4	589	4	PRRX1	1	170695522	Nonsense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09	11783379	170695522	78555099	3	34358										
KLF11	0	genome.wustl.edu	37	chr2	10188252	10188252	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	tcagacttgctcaccaaagaAttatgaaaatgacctgccca	6	11	2	4			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	2	10188252	10188252	A	G	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	1	known	missense	c.788	p.N263S	0.584	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	83	0	0	29	4	12.12	-	-	-	G	10188252	A	G	10188252	3	3	311	1	0	0	0	0	1	0	0	0	8392	101	4	5	798	5	KLF11	2	10188252	Missense_Mutation	SNP	A	TCGA-AO-A03L-01A-41W-A071-09		10188252	233011121	4	34359										
CBLB	0	genome.wustl.edu	37	chr3	105572448	105572448	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ctgatatgtatcaggcaaaaTatcaagtatatatggtgggc	10	5	2	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	3	105572448	105572448	T	C	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.229	p.I77V	1.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	225	0	0	96	58	37.66	-	-	-	C	105572448	T	C	105572448	3	2	311	1	0	0	0	0	1	0	0	0	2726	1406	49	5	2787	5	CBLB	3	105572448	Missense_Mutation	SNP	T	TCGA-AO-A03L-01A-41W-A071-09		105572448	92449982	5	34360										
GOLGB1	0	genome.wustl.edu	37	chr3	121410367	121410367	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gtcttgttagctgggatataGatactttcaaactctcaatc	7	8	3	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	3	121410367	121410367	G	C	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.7829	p.S2610C	0.075	smart_Leu_zip_homeo	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	443	0	0	145	29	16.67	-	-	-	C	121410367	G	C	121410367	3	2	311	1	0	0	0	0	1	0	0	0	6614	942	33	2	1986	2	GOLGB1	3	121410367	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09	15837919	121410367	76612063	6	34361										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	119	0	0	86	32	27.12	-	-	-	A	178921553	T	A	178921553	3	1	311	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-AO-A03L-01A-41W-A071-09	57511186	178921553	19100877	7	34362										
SETD7	0	genome.wustl.edu	37	chr4	140450374	140450374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	tcctacaaggcttcctccatCctgatgggagaaaccaaaaa	7	12	0	2			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	4	140450374	140450374	C	T	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	missense	c.373	p.D125N	1.000	pfam_MORN,pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	183	0	0	120	32	21.05	-	-	-	T	140450374	C	T	140450374	3	4	311	1	0	0	0	0	1	0	0	0	14224	869	30	2	747	2	SETD7	4	140450374	Missense_Mutation	SNP	C	TCGA-AO-A03L-01A-41W-A071-09		140450374	50703902	8	34363										
KCNN2	0	genome.wustl.edu	37	chr5	113822457	113822458	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gaactcaacaccccttgattINSaaaaaaaaaaaatagttgaa							TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	5	113822457	113822458	-	A	INS	KCNN2	ENST00000505491	human	ensembl	69_37n	1	known	frame_shift_ins	c.273_274	p.K95fs	0.000:0.000	NULL	pfam_Ion_trans_2	-	no_errors	KCNN2	HGNC	ENSG00000080709	13	0	0	11	3	21.43	-	-	-	A	113822458	-	A	113822457	7	5	311	1	0	1	1	0	0	0	0	0	8133	1769	61	0		0	KCNN2	5	113822457	Frame_Shift_Ins	INS	-	TCGA-AO-A03L-01A-41W-A071-09		113822457	67092803	9	34364										
ANK1	0	genome.wustl.edu	37	chr8	41554016	41554016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	tgcgggtgggcgctgcgcacGtccgtggcgggatcaccact	17	13	1	0			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	8	41554016	41554016	G	A	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.2825	p.T942M	0.985	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	25	0	0	7	5	41.67	-	-	-	A	41554016	G	A	41554016	3	1	311	1	0	0	0	0	1	0	0	0	620	1145	40	1	3214	1	ANK1	8	41554016	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09		41554016	104810006	10	34365										
SLC27A4	0	genome.wustl.edu	37	chr9	131110900	131110901	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	cctgggagcccggtgcggtgINScctccaagcacagaacacct							TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	9	131110900	131110901	-	T	INS	SLC27A4	ENST00000300456	human	ensembl	69_37n	1	known	frame_shift_ins	c.633_634	p.P211fs	0.996:1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	44	0	0	18	11	37.93	-	-	-	T	131110901	-	T	131110900	7	5	311	1	0	1	1	0	0	0	0	0	14617	1306	46	0	643	0	SLC27A4	9	131110900	Frame_Shift_Ins	INS	-	TCGA-AO-A03L-01A-41W-A071-09		131110900	10102531	11	34366										
MUC6	0	genome.wustl.edu	37	chr11	1016078	1016079	+	Frame_Shift_Ins	INS	-	-	G													0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	atgcaatggtgctggaggctINSaggtggctggatggggtggg							TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	11	1016078	1016079	-	G	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6723_6722	p.A2242fs	0.000:0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	16	0	0	20	12	37.5	-	-	-	G	1016079	-	G	1016078	7	5	311	1	0	1	1	0	0	0	0	0	10052	1509	53	0	608	0	MUC6	11	1016078	Frame_Shift_Ins	INS	-	TCGA-AO-A03L-01A-41W-A071-09		1016078	133990438	12	34367										
PTPRB	0	genome.wustl.edu	37	chr12	71029633	71029633	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	catagcaggtccatcggggtGcctgggaacagcggtccaag	15	11	0	0			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	12	71029633	71029633	G	T	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.269	p.A90E	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	67	0	0	60	10	14.29	-	-	-	T	71029633	G	T	71029633	3	4	311	1	0	0	0	0	1	0	0	0	12879	1319	46	4	6568	4	PTPRB	12	71029633	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09		71029633	62822262	13	34368										
UBN1	0	genome.wustl.edu	37	chr16	4920242	4920242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gcagactcgggagctgagcaGtcaggtccgctctggggtgt	17	10	2	2			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	16	4920242	4920242	G	A	SNP	UBN1	ENST00000262376	human	ensembl	69_37n	1	known	missense	c.1211	p.S404N	0.985	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900	87	0	0	56	13	18.84	-	-	-	A	4920242	G	A	4920242	3	1	311	1	0	0	0	0	1	0	0	0	16989	1029	36	4	1241	4	UBN1	16	4920242	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09		4920242	85434511	14	34369										
TP53	0	genome.wustl.edu	37	chr17	7577498	7577498	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gggtggcaagtggctcctgaCctggagtcttccagtgtgat	15	9	1	2			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	17	7577498	7577498	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.782+1	e6+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	37	0	0	14	13	48.15	-	-	-	T	7577498	C	T	7577498	5	4	311	1	0	0	0	0	0	0	1	0	16477	521	18	4	507	4	TP53	17	7577498	Splice_Site	SNP	C	TCGA-AO-A03L-01A-41W-A071-09		7577498	73617712	15	34370										
CRHR1	0	genome.wustl.edu	37	chr17	43893925	43893925	+	Frame_Shift_Del	DEL	A	A	-													0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gccctgccctgcctttttctAtggtgtccgctacaatacca							TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	17	43893925	43893925	A	-	DEL	CRHR1	ENST00000398285	human	ensembl	69_37n	1	known	frame_shift_del	c.218	p.Y73fs	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_diuretic_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088	33	0	0	11	2	15.38	-	-	-	-	43893925	A	-	43893925	7	5	311	1	0	1	0	1	0	0	0	0	3901	449	16	0	228	0	CRHR1	17	43893925	Frame_Shift_Del	DEL	A	TCGA-AO-A03L-01A-41W-A071-09	36316427	43893925	37301285	16	34371										
SERPINB8	0	genome.wustl.edu	37	chr18	61654433	61654433	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	aatggagccaagattctgtgCagaccacccttttcttttct	7	11	3	2			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	18	61654433	61654433	C	A	SNP	SERPINB8	ENST00000353706	human	ensembl	69_37n	1	known	missense	c.1046	p.A349E	0.975	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401	155	1	0.64	110	19	14.73	-	-	-	A	61654433	C	A	61654433	3	1	311	1	0	0	0	0	1	0	0	0	14195	710	25	4	1081	4	SERPINB8	18	61654433	Missense_Mutation	SNP	C	TCGA-AO-A03L-01A-41W-A071-09		61654433	16422815	17	34372										
CGB2	0	genome.wustl.edu	37	chr19	49535834	49535834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	gccgcttcggccacggtgccGccccatcaatgccaccctgg	11	19	1	0			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	19	49535834	49535834	G	A	SNP	CGB2	ENST00000359342	human	ensembl	69_37n	1	known	missense	c.83	p.R28H	1.000	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB2	HGNC	ENSG00000104818	9	0	0	5	4	44.44	-	-	-	A	49535834	G	A	49535834	3	1	311	1	0	0	0	0	1	0	0	0	3327	1087	38	1	89	1	CGB2	19	49535834	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09		49535834	9593149	18	34373										
KCNA7	0	genome.wustl.edu	37	chr19	49573837	49573838	+	Frame_Shift_Del	DEL	AC	AC	-													0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	acagcttgaagatgcggaagAcacgcaccaatcggatgact							TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	19	49573837	49573838	AC	-	DEL	KCNA7	ENST00000221444	human	ensembl	69_37n	-1	known	frame_shift_del	c.854_853	p.V285fs	1.000:1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	40	0	0	2	4	66.67	-	-	-	-	49573838	AC	-	49573837	7	5	311	1	0	1	0	1	0	0	0	0	8062	275	10	0	520	0	KCNA7	19	49573837	Frame_Shift_Del	DEL	AC	TCGA-AO-A03L-01A-41W-A071-09	38003	49573837	9555146	19	34374										
PAK7	0	genome.wustl.edu	37	chr20	9520175	9520175	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ggacctgctagttttaagaaTggatgtccgaggagttcctg	13	7	0	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	20	9520175	9520175	T	C	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	silent	c.2094	p.P698	0.440	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	365	0	0	207	91	30.33	-	-	-	C	9520175	T	C	9520175	2	2	311	1	0	0	0	0	0	0	0	1	11478	1451	51	5		5	PAK7	20	9520175	Silent	SNP	T	TCGA-AO-A03L-01A-41W-A071-09		9520175	53505345	20	34375										
XRN2	0	genome.wustl.edu	37	chr20	21307234	21307234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ttctctacatggcaatagatGgagtggtaagtgctaaaata	10	5	1	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	20	21307234	21307234	G	A	SNP	XRN2	ENST00000377191	human	ensembl	69_37n	1	known	missense	c.310	p.G104R	1.000	pfam_Put_53exo,pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930	59	0	0	60	33	35.48	-	-	-	A	21307234	G	A	21307234	3	1	311	1	0	0	0	0	1	0	0	0	17557	1349	47	4	320	4	XRN2	20	21307234	Missense_Mutation	SNP	G	TCGA-AO-A03L-01A-41W-A071-09	11787059	21307234	41718286	21	34376										
DDX3X	0	genome.wustl.edu	37	chrX	41201888	41201888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ttggtcaaaaccactcccacCaagtgaacgcttggaacagt	8	12	1	1			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	X	41201888	41201888	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.425	p.P142L	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	138	0	0	116	24	17.14	-	-	-	T	41201888	C	T	41201888	3	4	311	1	0	0	0	0	1	0	0	0	4389	594	21	4	443	4	DDX3X	23	41201888	Missense_Mutation	SNP	C	TCGA-AO-A03L-01A-41W-A071-09		41201888	114068672	22	34377										
ESX1	0	genome.wustl.edu	37	chrX	103499462	103499462	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	cactaaccattcacttcctcGatgtcctcgccgactgccag	6	17	1	0			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	X	103499462	103499462	G	A	SNP	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	silent	c.69	p.I23	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	188	0	0	59	14	19.18	-	-	-	A	103499462	G	A	103499462	2	1	311	1	0	0	0	0	0	0	0	1	5300	1048	37	1		1	ESX1	23	103499462	Silent	SNP	G	TCGA-AO-A03L-01A-41W-A071-09	62297574	103499462	51771098	23	34378										
MECP2	0	genome.wustl.edu	37	chrX	153296385	153296385	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	2	0.829492527346591	1.27603305785124	7.01818181818182	0	0.333333333333333	0.930327025915261	0	ttcttgatggggagtacggtCtcctgcacagatcggataga	13	8	2	3			TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	743a29c4-e1cc-457a-8406-765f1a1bc114	678ca994-371f-4329-81c7-17b93fd4ba0c	X	153296385	153296385	C	G	SNP	MECP2	ENST00000303391	human	ensembl	69_37n	-1	known	missense	c.894	p.E298D	1.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057	106	0	0	50	27	35.06	-	-	-	G	153296385	C	G	153296385	3	3	311	1	0	0	0	0	1	0	0	0	9494	912	32	2	570	2	MECP2	23	153296385	Missense_Mutation	SNP	C	TCGA-AO-A03L-01A-41W-A071-09	49796923	153296385	1974175	24	34379										
CHD5	0	genome.wustl.edu	37	chr1	6172237	6172237	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcgatgttgaacatgaacttGaatttccccttcttgtcctc	7	11	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	6172237	6172237	G	C	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.5103	p.F1701L	0.983	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	272	0	0	138	57	29.23	-	-	-	C	6172237	G	C	6172237	3	2	312	1	0	0	0	0	1	0	0	0	3357	1281	45	2	789	2	CHD5	1	6172237	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		6172237	243078384	1	34380										
DNAJC11	0	genome.wustl.edu	37	chr1	6738481	6738481	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccttccatttccagtcctctCttcccatatatatcatagat	2	14	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	6738481	6738481	C	T	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	silent	c.249	p.K83	1.000	superfamily_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ-like_C11_C,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC11	HGNC	ENSG00000007923	314	0	0	157	43	21.5	-	-	-	T	6738481	C	T	6738481	2	4	312	1	0	0	0	0	0	0	0	1	4665	912	32	2		2	DNAJC11	1	6738481	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	566244	6738481	242512140	2	34381										
CAMTA1	0	genome.wustl.edu	37	chr1	7806023	7806023	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctccgccgcggattggtcaGaattcctgagtgcatctacc	10	14	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	7806023	7806023	G	C	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.4489	p.E1497Q	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	154	0	0	90	12	11.76	-	-	-	C	7806023	G	C	7806023	3	2	312	1	0	0	0	0	1	0	0	0	2638	943	33	2	4559	2	CAMTA1	1	7806023	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1067542	7806023	241444598	3	34382										
MFN2	0	genome.wustl.edu	37	chr1	12049355	12049355	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaagatcaatggcatttttGagcagctgggggcctacatc	12	8	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	12049355	12049355	G	C	SNP	MFN2	ENST00000235329	human	ensembl	69_37n	1	known	missense	c.130	p.E44Q	1.000	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN2	HGNC	ENSG00000116688	159	0	0	81	15	15.62	-	-	-	C	12049355	G	C	12049355	3	2	312	1	0	0	0	0	1	0	0	0	9595	1291	45	2	132	2	MFN2	1	12049355	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4243332	12049355	237201266	4	34383										
VPS13D	0	genome.wustl.edu	37	chr1	12382770	12382770	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcgttggagaggaaatcagaGaagggacaagacacacctta	13	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	12382770	12382770	G	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.7882	p.E2628Q	0.993	superfamily_UBA-like	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	166	0	0	85	13	13.27	-	-	-	C	12382770	G	C	12382770	3	2	312	1	0	0	0	0	1	0	0	0	17289	943	33	2	8012	2	VPS13D	1	12382770	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	333415	12382770	236867851	5	34384										
CLCNKA	0	genome.wustl.edu	37	chr1	16355791	16355791	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttgccttcttcctggttatGaaggtgggccccctgacccc	10	15	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	16355791	16355791	G	C	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	missense	c.1224	p.M408I	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	162	0	0	79	31	28.18	-	-	-	C	16355791	G	C	16355791	3	2	312	1	0	0	0	0	1	0	0	0	3499	1290	45	2	1266	2	CLCNKA	1	16355791	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3973021	16355791	232894830	6	34385										
CLCNKA	0	genome.wustl.edu	37	chr1	16356261	16356261	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctggccaccaccatccccatGcctgccgggtacttcatgcc	8	19	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	16356261	16356261	G	C	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	missense	c.1263	p.M421I	0.550	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	592	0	0	289	115	28.4	-	-	-	C	16356261	G	C	16356261	3	2	312	1	0	0	0	0	1	0	0	0	3499	1319	46	4	1309	4	CLCNKA	1	16356261	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	470	16356261	232894360	7	34386										
ARHGEF19	0	genome.wustl.edu	37	chr1	16534659	16534659	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acctggccaggctctaggaaGacagcgtgggcctcggggca	16	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	16534659	16534659	G	A	SNP	ARHGEF19	ENST00000270747	human	ensembl	69_37n	-1	known	silent	c.474	p.V158	0.917	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	59	0	0	46	6	11.54	-	-	-	A	16534659	G	A	16534659	2	1	312	1	0	0	0	0	0	0	0	1	904	929	33	2		2	ARHGEF19	1	16534659	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	178398	16534659	232715962	8	34387										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17961022	17961022	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtaataacaatctccctttCcttcttgtcttttttcccag	3	12	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	17961022	17961022	C	A	SNP	ARHGEF10L	ENST00000482359	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	276	0	0	168	47	21.86	-	-	-	A	17961022	C	A	17961022	1	1	312	0	1	0	0	0	0	0	0	0	897	870	30	2		2	ARHGEF10L	1	17961022	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1426363	17961022	231289599	9	34388										
DHDDS	0	genome.wustl.edu	37	chr1	26795577	26795577	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttcctgcaggccttggaactCaagcgagctgactggctggc	13	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	26795577	26795577	C	G	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	silent	c.960	p.L320	1.000	NULL	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	23	0	0	11	5	31.25	-	-	-	G	26795577	C	G	26795577	2	3	312	1	0	0	0	0	0	0	0	1	4514	813	29	2		2	DHDDS	1	26795577	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8834555	26795577	222455044	10	34389										
NUDC	0	genome.wustl.edu	37	chr1	27272144	27272144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtccatggggctgccaacttCagacgaacagaagaaacagg	12	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	27272144	27272144	C	T	SNP	NUDC	ENST00000321265	human	ensembl	69_37n	1	known	missense	c.911	p.S304L	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDC	HGNC	ENSG00000090273	101	0	0	71	14	16.47	-	-	-	T	27272144	C	T	27272144	3	4	312	1	0	0	0	0	1	0	0	0	10794	838	29	2	941	2	NUDC	1	27272144	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	476567	27272144	221978477	11	34390										
YTHDF2	0	genome.wustl.edu	37	chr1	29064169	29064169	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgacgtttccttcccctgcaGagaccaaaaggtcaaggaaa	9	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	29064169	29064169	G	C	SNP	YTHDF2	ENST00000373812	human	ensembl	69_37n	1	known	splice_site	c.28-1	e2-1	1.000	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	191	0	0	127	15	10.56	-	-	-	C	29064169	G	C	29064169	5	2	312	1	0	0	0	0	0	0	1	0	17596	956	33	2	33	2	YTHDF2	1	29064169	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1792025	29064169	220186452	12	34391										
ADPRHL2	0	genome.wustl.edu	37	chr1	36557534	36557534	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcccggctctcggcccagctGacacacgcctcctccctggg	11	20	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	36557534	36557534	G	A	SNP	ADPRHL2	ENST00000373178	human	ensembl	69_37n	1	known	silent	c.540	p.L180	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863	169	0	0	128	15	10.49	-	-	-	A	36557534	G	A	36557534	2	1	312	1	0	0	0	0	0	0	0	1	333	1277	45	2		2	ADPRHL2	1	36557534	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7493365	36557534	212693087	13	34392										
PPT1	0	genome.wustl.edu	37	chr1	40542569	40542569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttccttggcttggccacttCtgtaaaatccaaaccactgc	6	13	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	40542569	40542569	C	T	SNP	PPT1	ENST00000433473	human	ensembl	69_37n	-1	known	missense	c.743	p.R248K	1.000	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238	143	0	0	62	9	12.68	-	-	-	T	40542569	C	T	40542569	3	4	312	1	0	0	0	0	1	0	0	0	12488	913	32	2	185	2	PPT1	1	40542569	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3985035	40542569	208708052	14	34393										
ZNF643	0	genome.wustl.edu	37	chr1	40929122	40929122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcctttaggcatgattcatCctttgctaaacatcagagaa	7	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	40929122	40929122	C	T	SNP	ZNF643	ENST00000411995	human	ensembl	69_37n	1	known	missense	c.1466	p.S489F	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF643	HGNC	ENSG00000187801	177	0	0	90	15	14.29	-	-	-	T	40929122	C	T	40929122	3	4	312	1	0	0	0	0	1	0	0	0	18155	855	30	2	1484	2	ZNF643	1	40929122	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	386553	40929122	208321499	15	34394										
FOXJ3	0	genome.wustl.edu	37	chr1	42730838	42730838	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taaggaaacatttgttcaatGacagattatgtcgtatggaa	9	4	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	42730838	42730838	G	A	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.392	p.S131L	1.000	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	216	0	0	112	19	14.5	-	-	-	A	42730838	G	A	42730838	3	1	312	1	0	0	0	0	1	0	0	0	6061	1294	45	2	1516	2	FOXJ3	1	42730838	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1801716	42730838	206519783	16	34395										
MPL	0	genome.wustl.edu	37	chr1	43814957	43814957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggatctccttggtgaccgctCtgcatctagtgctgggcctc	12	13	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	43814957	43814957	C	G	SNP	MPL	ENST00000372470	human	ensembl	69_37n	1	known	missense	c.1492	p.L498V	0.516	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400	131	0	0	102	18	14.88	-	-	-	G	43814957	C	G	43814957	3	3	312	1	0	0	0	0	1	0	0	0	9802	912	32	2	1530	2	MPL	1	43814957	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1084119	43814957	205435664	17	34396										
KDM4A	0	genome.wustl.edu	37	chr1	44137198	44137198	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tattctgactccactgaagtCaaatttgaagagcttaaaaa	6	7	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	44137198	44137198	C	G	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	silent	c.1386	p.V462	0.989	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	163	0	0	82	17	17.17	-	-	-	G	44137198	C	G	44137198	2	3	312	1	0	0	0	0	0	0	0	1	8182	813	29	2		2	KDM4A	1	44137198	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	322241	44137198	205113423	18	34397										
MUTYH	0	genome.wustl.edu	37	chr1	45796988	45796988	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgatatgtcagcttgatgtGagagaaggtgtggacaacct	13	5	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	45796988	45796988	G	C	SNP	MUTYH	ENST00000450313	human	ensembl	69_37n	-1	known	missense	c.1342	p.H448D	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781	131	0	0	75	11	12.79	-	-	-	C	45796988	G	C	45796988	3	2	312	1	0	0	0	0	1	0	0	0	10065	1290	45	2	319	2	MUTYH	1	45796988	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1659790	45796988	203453633	19	34398										
CCDC17	0	genome.wustl.edu	37	chr1	46087134	46087134	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctcaaggccccgcaggaaatCatagaaaatgaccaggccag	10	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	46087134	46087134	C	G	SNP	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	missense	c.1111	p.D371H	1.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	85	0	0	55	10	15.15	-	-	-	G	46087134	C	G	46087134	3	3	312	1	0	0	0	0	1	0	0	0	2819	826	29	2	677	2	CCDC17	1	46087134	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	290146	46087134	203163487	20	34399										
FAAH	0	genome.wustl.edu	37	chr1	46874946	46874946	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggagcagcagggtgtggtGatgcctggatgggccttagc	20	7	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	46874946	46874946	G	A	SNP	FAAH	ENST00000489366	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	FAAH	HGNC	ENSG00000117480	118	0	0	67	8	10.53	-	-	-	A	46874946	G	A	46874946	1	1	312	0	1	0	0	0	0	0	0	0	5393	1305	45	2		2	FAAH	1	46874946	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	787812	46874946	202375675	21	34400										
MKNK1	0	genome.wustl.edu	37	chr1	47048952	47048952	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cggcccctccgcttcttcttCctcctcctgtcaccatctgc	5	21	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	47048952	47048952	C	T	SNP	MKNK1	ENST00000371946	human	ensembl	69_37n	-1	known	silent	c.84	p.R28	0.960	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277	121	0	0	56	12	17.65	-	-	-	T	47048952	C	T	47048952	2	4	312	1	0	0	0	0	0	0	0	1	9675	854	30	2		2	MKNK1	1	47048952	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	174006	47048952	202201669	22	34401										
CYP4A11	0	genome.wustl.edu	37	chr1	47403000	47403000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atggagccaggaatctgtagGaaccatgggatttcgggtct	14	7	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	47403000	47403000	G	A	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.356	p.S119F	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	411	0	0	207	56	21.21	-	-	-	A	47403000	G	A	47403000	3	1	312	1	0	0	0	0	1	0	0	0	4214	1174	41	2	1243	2	CYP4A11	1	47403000	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	354048	47403000	201847621	23	34402										
SPATA6	0	genome.wustl.edu	37	chr1	48877186	48877186	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctggcggtttgaatcatggtGtccagacatttggtttggac	13	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	48877186	48877186	G	T	SNP	SPATA6	ENST00000371847	human	ensembl	69_37n	-1	known	missense	c.355	p.H119N	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122	180	0	0	76	23	23.23	-	-	-	T	48877186	G	T	48877186	3	4	312	1	0	0	0	0	1	0	0	0	15104	1377	48	4	1147	4	SPATA6	1	48877186	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1474186	48877186	200373435	24	34403										
TTC39A	0	genome.wustl.edu	37	chr1	51770779	51770779	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctgaaaaccccacaaactCcaacagcctcaggatcctag	5	16	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	51770779	51770779	C	A	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	nonsense	c.736	p.E246*	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	126	0	0	102	13	11.3	-	-	-	A	51770779	C	A	51770779	4	1	312	1	0	0	0	0	0	1	0	0	16804	864	30	2	1149	2	TTC39A	1	51770779	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2893593	51770779	197479842	25	34404										
MRPL37	0	genome.wustl.edu	37	chr1	54670807	54670807	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaaccaagacgagtgcgttCtgaatgtgatctctcacgcc	10	11	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	54670807	54670807	C	T	SNP	MRPL37	ENST00000360840	human	ensembl	69_37n	1	known	silent	c.463	p.L155	0.999	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPL37	HGNC	ENSG00000116221	128	0	0	58	13	18.31	-	-	-	T	54670807	C	T	54670807	2	4	312	1	0	0	0	0	0	0	0	1	9872	912	32	2		2	MRPL37	1	54670807	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2900028	54670807	194579814	26	34405										
C1orf177	0	genome.wustl.edu	37	chr1	55272746	55272746	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccatactccacgcgttattCtacccaagtggtgagtttgc	8	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	55272746	55272746	C	T	SNP	C1orf177	ENST00000371273	human	ensembl	69_37n	1	known	missense	c.182	p.S61F	0.027	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398	254	0	0	124	22	14.97	-	-	-	T	55272746	C	T	55272746	3	4	312	1	0	0	0	0	1	0	0	0	2036	913	32	2	188	2	C1orf177	1	55272746	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	601939	55272746	193977875	27	34406										
HOOK1	0	genome.wustl.edu	37	chr1	60302572	60302572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtaaagaaatattgagctctCctccaaatgatgctgttgga	9	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	60302572	60302572	C	T	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.502	p.P168S	0.076	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	287	0	0	146	29	16.57	-	-	-	T	60302572	C	T	60302572	3	4	312	1	0	0	0	0	1	0	0	0	7333	855	30	2	528	2	HOOK1	1	60302572	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5029826	60302572	188948049	28	34407										
SGIP1	0	genome.wustl.edu	37	chr1	67206375	67206375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agagaatattgtggaagattCctgatatctctcagaagtca	9	6	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	67206375	67206375	C	T	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.2362	p.P788S	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	139	0	0	69	14	16.87	-	-	-	T	67206375	C	T	67206375	3	4	312	1	0	0	0	0	1	0	0	0	14294	855	30	2	2359	2	SGIP1	1	67206375	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6903803	67206375	182044246	29	34408										
ST6GALNAC5	0	genome.wustl.edu	37	chr1	77509966	77509966	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacagtcggcaaggctcccaGattgaccagacagagtgtgt	12	11	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	77509966	77509966	G	C	SNP	ST6GALNAC5	ENST00000477717	human	ensembl	69_37n	1	known	missense	c.339	p.Q113H	0.972	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069	29	0	0	20	4	16.67	-	-	-	C	77509966	G	C	77509966	3	2	312	1	0	0	0	0	1	0	0	0	15318	933	33	2	349	2	ST6GALNAC5	1	77509966	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10303591	77509966	171740655	30	34409										
ELTD1	0	genome.wustl.edu	37	chr1	79472337	79472337	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctaggagcgggaggcgtttCattggcggtggccgcagtgg	19	9	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	79472337	79472337	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	97	0	0	49	11	18.33	-	-	-	T	79472337	C	T	79472337	3	4	312	1	0	0	0	0	1	0	0	0	5121	826	29	2	2129	2	ELTD1	1	79472337	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1962371	79472337	169778284	31	34410										
ZNF326	0	genome.wustl.edu	37	chr1	90470570	90470570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	actctcttttaggaatggatCgtgattatggccctggatct	10	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	90470570	90470570	C	T	SNP	ZNF326	ENST00000340281	human	ensembl	69_37n	1	known	missense	c.70	p.R24C	1.000	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664	555	0	0	239	34	12.36	-	-	-	T	90470570	C	T	90470570	3	4	312	1	0	0	0	0	1	0	0	0	17942	884	31	1	80	1	ZNF326	1	90470570	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10998233	90470570	158780051	32	34411										
EPHX4	0	genome.wustl.edu	37	chr1	92515873	92515873	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacatggcattttaatttcaGaatatattttacgacaccct	4	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	92515873	92515873	G	A	SNP	EPHX4	ENST00000370383	human	ensembl	69_37n	1	known	splice_site	c.605-1	e5-1	1.000	-	-	-	no_errors	EPHX4	HGNC	ENSG00000172031	167	0	0	88	11	11	-	-	-	A	92515873	G	A	92515873	5	1	312	1	0	0	0	0	0	0	1	0	5219	956	33	2	622	2	EPHX4	1	92515873	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2045303	92515873	156734748	33	34412										
CCDC18	0	genome.wustl.edu	37	chr1	93711671	93711671	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ataaattgtagagaatgcaaGatggagattgaagacaaaaa	10	2	0	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	93711671	93711671	G	C	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	missense	c.3345	p.K1115N	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	176	0	0	69	9	11.54	-	-	-	C	93711671	G	C	93711671	3	2	312	1	0	0	0	0	1	0	0	0	2820	933	33	2	3431	2	CCDC18	1	93711671	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1195798	93711671	155538950	34	34413										
DNTTIP2	0	genome.wustl.edu	37	chr1	94343226	94343226	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaataatttgactctgcctCagaggtttctccatccgtag	8	10	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	94343226	94343226	C	T	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	missense	c.265	p.E89K	1.000	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	291	0	0	151	30	16.57	-	-	-	T	94343226	C	T	94343226	3	4	312	1	0	0	0	0	1	0	0	0	4717	835	29	2	2029	2	DNTTIP2	1	94343226	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	631555	94343226	154907395	35	34414										
DBT	0	genome.wustl.edu	37	chr1	100661894	100661894	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcgtgacattgtagcaccatCaataactctgtgatcagctg	9	10	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	100661894	100661894	C	T	SNP	DBT	ENST00000370132	human	ensembl	69_37n	-1	known	missense	c.1366	p.D456N	1.000	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	DBT	HGNC	ENSG00000137992	291	0	0	163	19	10.38	-	-	-	T	100661894	C	T	100661894	3	4	312	1	0	0	0	0	1	0	0	0	4290	826	29	2	86	2	DBT	1	100661894	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6318668	100661894	148588727	36	34415										
CDC14A	0	genome.wustl.edu	37	chr1	100928262	100928262	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatttcaaaaagcataatgtGactgcagttgtgaggctaaa	9	5	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	100928262	100928262	G	A	SNP	CDC14A	ENST00000361544	human	ensembl	69_37n	1	known	silent	c.663	p.V221	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335	160	0	0	82	13	13.54	-	-	-	A	100928262	G	A	100928262	2	1	312	1	0	0	0	0	0	0	0	1	3085	1277	45	2		2	CDC14A	1	100928262	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	266368	100928262	148322359	37	34416										
STXBP3	0	genome.wustl.edu	37	chr1	109336203	109336203	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaaatgtttgatttttcctaGacatcacttagtgctcttac	5	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	109336203	109336203	G	C	SNP	STXBP3	ENST00000370008	human	ensembl	69_37n	1	known	splice_site	c.964-1	e12-1	1.000	-	-	-	no_errors	STXBP3	HGNC	ENSG00000116266	236	0	0	113	30	20.98	-	-	-	C	109336203	G	C	109336203	5	2	312	1	0	0	0	0	0	0	1	0	15445	956	33	2	1009	2	STXBP3	1	109336203	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8407941	109336203	139914418	38	34417										
SORT1	0	genome.wustl.edu	37	chr1	109896991	109896991	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttcctcaactggacttacttCagtgctgagagctaaaagat	8	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	109896991	109896991	C	T	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	missense	c.706	p.E236K	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	183	0	0	94	11	10.48	-	-	-	T	109896991	C	T	109896991	3	4	312	1	0	0	0	0	1	0	0	0	15024	835	29	2	1853	2	SORT1	1	109896991	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	560788	109896991	139353630	39	34418										
SLC6A17	0	genome.wustl.edu	37	chr1	110737302	110737302	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgttcttcttgatgcttatCaacctgggcctgggcagcat	10	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	110737302	110737302	C	T	SNP	SLC6A17	ENST00000331565	human	ensembl	69_37n	1	known	silent	c.1401	p.I467	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	137	0	0	80	10	11.11	-	-	-	T	110737302	C	T	110737302	2	4	312	1	0	0	0	0	0	0	0	1	14769	816	29	2		2	SLC6A17	1	110737302	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	840311	110737302	138513319	40	34419										
KCNA3	0	genome.wustl.edu	37	chr1	111215712	111215712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtatcacatattaaacatCggtgaatatctttttgatgt	6	5	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	111215712	111215712	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	69_37n	-1	known	missense	c.1720	p.D574N	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272	236	1	0.42	96	22	18.49	-	-	-	T	111215712	C	T	111215712	3	4	312	1	0	0	0	0	1	0	0	0	8058	884	31	1	11	1	KCNA3	1	111215712	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	478410	111215712	138034909	41	34420										
OVGP1	0	genome.wustl.edu	37	chr1	111957325	111957325	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctggggtgagtgcccacctCagaagtcaaattctcccctc	9	15	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	111957325	111957325	C	T	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.1798	p.E600K	0.000	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	157	0	0	84	12	12.5	-	-	-	T	111957325	C	T	111957325	3	4	312	1	0	0	0	0	1	0	0	0	11398	835	29	2	242	2	OVGP1	1	111957325	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	741613	111957325	137293296	42	34421										
PTPN22	0	genome.wustl.edu	37	chr1	114401701	114401701	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctacccggctataatcatCtataatacaaaagacagaca	4	10	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	114401701	114401701	C	G	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	splice_site	c.197-1	e3-1	1.000	-	-	-	no_errors	PTPN22	HGNC	ENSG00000134242	205	0	0	121	39	24.38	-	-	-	G	114401701	C	G	114401701	5	3	312	1	0	0	0	0	0	0	1	0	12870	927	32	2	2326	2	PTPN22	1	114401701	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2444376	114401701	134848920	43	34422										
TSPAN2	0	genome.wustl.edu	37	chr1	115593133	115593133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atatcacatctcgtgagtttCgtatcgcacagcagaggacc	9	11	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	115593133	115593133	C	T	SNP	TSPAN2	ENST00000369516	human	ensembl	69_37n	-1	known	missense	c.644	p.R215Q	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN2	HGNC	ENSG00000134198	274	0	0	142	21	12.88	-	-	-	T	115593133	C	T	115593133	3	4	312	1	0	0	0	0	1	0	0	0	16740	884	31	1	25	1	TSPAN2	1	115593133	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1191432	115593133	133657488	44	34423										
TTF2	0	genome.wustl.edu	37	chr1	117624493	117624493	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accctgacaatgattgcgctCatcctgacccagaagaatca	7	13	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	117624493	117624493	C	T	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	silent	c.1827	p.L609	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	251	0	0	125	22	14.97	-	-	-	T	117624493	C	T	117624493	2	4	312	1	0	0	0	0	0	0	0	1	16816	813	29	2		2	TTF2	1	117624493	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2031360	117624493	131626128	45	34424										
HAO2	0	genome.wustl.edu	37	chr1	119936427	119936427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggctgccggtcggtcgctgaGatcaatcgaaacttggtcca	13	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	119936427	119936427	G	C	SNP	HAO2	ENST00000361035	human	ensembl	69_37n	1	known	missense	c.1059	p.E353D	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882	331	0	0	212	35	14.11	-	-	-	C	119936427	G	C	119936427	3	2	312	1	0	0	0	0	1	0	0	0	7003	933	33	2	1046	2	HAO2	1	119936427	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2311934	119936427	129314194	46	34425										
PIP5K1A	0	genome.wustl.edu	37	chr1	151214635	151214635	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caaaaagtttcggtctggctCatctttctctcggcgagcag	10	11	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	151214635	151214635	C	G	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	nonsense	c.1400	p.S467*	0.978	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	138	0	0	106	14	11.67	-	-	-	G	151214635	C	G	151214635	4	3	312	1	0	0	0	0	0	1	0	0	12013	838	29	2	1450	2	PIP5K1A	1	151214635	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	31278208	151214635	98035986	47	34426										
INTS3	0	genome.wustl.edu	37	chr1	153730149	153730149	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtgacctcattcgctacatCtgtggggtagtccacccttc	9	13	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	153730149	153730149	C	T	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	silent	c.1059	p.I353	1.000	pfam_Integrator_3	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	182	0	0	107	37	25.52	-	-	-	T	153730149	C	T	153730149	2	4	312	1	0	0	0	0	0	0	0	1	7833	903	32	2		2	INTS3	1	153730149	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2515514	153730149	95520472	48	34427										
AQP10	0	genome.wustl.edu	37	chr1	154296361	154296361	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtccctgggtccacagcactCtgcctttaaaatagctctct	7	14	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	154296361	154296361	C	T	SNP	AQP10	ENST00000484864	human	ensembl	69_37n	1	known	silent	c.786	p.L262	0.000	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3	-	no_errors	AQP10	HGNC	ENSG00000143595	38	0	0	15	5	25	-	-	-	T	154296361	C	T	154296361	2	4	312	1	0	0	0	0	0	0	0	1	824	928	32	2		2	AQP10	1	154296361	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	566212	154296361	94954260	49	34428										
DAP3	0	genome.wustl.edu	37	chr1	155706571	155706571	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtagccagccaccatatgtgGagtccatatgtggagtcctg	12	10	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	155706571	155706571	G	C	SNP	DAP3	ENST00000476444	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DAP3	HGNC	ENSG00000132676	39	0	0	20	4	16.67	-	-	-	C	155706571	G	C	155706571	1	2	312	0	1	0	0	0	0	0	0	0	4266	1189	41	2		2	DAP3	1	155706571	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1410210	155706571	93544050	50	34429										
GON4L	0	genome.wustl.edu	37	chr1	155755109	155755109	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaaatcccgtgttctcactcGaggatcattactcacagttt	6	11	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	155755109	155755109	G	A	SNP	GON4L	ENST00000467009	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	405	0	0	206	53	20.31	-	-	-	A	155755109	G	A	155755109	1	1	312	0	1	0	0	0	0	0	0	0	6621	1073	37	1		1	GON4L	1	155755109	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	48538	155755109	93495512	51	34430										
RAB25	0	genome.wustl.edu	37	chr1	156039895	156039895	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgtatgggggggttggggaGaagggagcatgggctctaaa	20	3	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	156039895	156039895	G	C	SNP	RAB25	ENST00000487325	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAB25	HGNC	ENSG00000132698	59	0	0	28	4	12.5	-	-	-	C	156039895	G	C	156039895	1	2	312	0	1	0	0	0	0	0	0	0	12995	957	33	2		2	RAB25	1	156039895	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	284786	156039895	93210726	52	34431										
FCRL2	0	genome.wustl.edu	37	chr1	157737322	157737322	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacagacacagaggggctatCagaaaagatttgtgatgcct	12	7	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	157737322	157737322	C	T	SNP	FCRL2	ENST00000469986	human	ensembl	69_37n	-1	known	silent	c.102	p.L34	0.000	NULL	pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	87	0	0	52	10	16.13	-	-	-	T	157737322	C	T	157737322	2	4	312	1	0	0	0	0	0	0	0	1	5841	841	29	2		2	FCRL2	1	157737322	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1697427	157737322	91513299	53	34432										
SLAMF1	0	genome.wustl.edu	37	chr1	160604688	160604688	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctggagtggagacctgctCtgtcaggagtgggaggaagg	18	6	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	160604688	160604688	C	T	SNP	SLAMF1	ENST00000302035	human	ensembl	69_37n	-1	known	splice_site	c.416-1	e3-1	1.000	-	-	-	no_errors	SLAMF1	HGNC	ENSG00000117090	160	0	0	71	9	11.25	-	-	-	T	160604688	C	T	160604688	5	4	312	1	0	0	0	0	0	0	1	0	14456	927	32	2	612	2	SLAMF1	1	160604688	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2867366	160604688	88645933	54	34433										
LY9	0	genome.wustl.edu	37	chr1	160788033	160788033	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagagaaacacaaagctttgGattgggttgttcctgatggt	13	5	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	160788033	160788033	G	C	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.1368	p.W456C	0.024	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	682	0	0	381	46	10.75	-	-	-	C	160788033	G	C	160788033	3	2	312	1	0	0	0	0	1	0	0	0	9168	1183	41	2	1522	2	LY9	1	160788033	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	183345	160788033	88462588	55	34434										
NOS1AP	0	genome.wustl.edu	37	chr1	162335292	162335292	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgcagaacaaggacatgctCcagcacatctccctgctggt	9	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	162335292	162335292	C	T	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	silent	c.1038	p.L346	0.917	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	90	0	0	46	16	25.81	-	-	-	T	162335292	C	T	162335292	2	4	312	1	0	0	0	0	0	0	0	1	10614	842	30	2		2	NOS1AP	1	162335292	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1547259	162335292	86915329	56	34435										
GORAB	0	genome.wustl.edu	37	chr1	170521388	170521388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgctacacgaacaagaagtaGaatcaaggagaccagtggtt	11	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	170521388	170521388	G	C	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.970	p.E324Q	0.681	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	151	0	0	75	9	10.71	-	-	-	C	170521388	G	C	170521388	3	2	312	1	0	0	0	0	1	0	0	0	6623	943	33	2	992	2	GORAB	1	170521388	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8186096	170521388	78729233	57	34436										
C1orf129	0	genome.wustl.edu	37	chr1	170931075	170931075	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atatatgagaacattcttacGagcttggtgtctaaagacct	8	7	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	170931075	170931075	G	C	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	silent	c.333	p.T111	0.656	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	107	0	0	54	7	11.48	-	-	-	C	170931075	G	C	170931075	2	2	312	1	0	0	0	0	0	0	0	1	2015	1045	37	3		3	C1orf129	1	170931075	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	409687	170931075	78319546	58	34437										
FMO1	0	genome.wustl.edu	37	chr1	171236744	171236744	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtttccaacagctgcaaggaGatgtcttgttactcagactt	9	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	171236744	171236744	G	A	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	silent	c.195	p.E65	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	271	0	0	150	35	18.92	-	-	-	A	171236744	G	A	171236744	2	1	312	1	0	0	0	0	0	0	0	1	6000	933	33	2		2	FMO1	1	171236744	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	305669	171236744	78013877	59	34438										
ZBTB37	0	genome.wustl.edu	37	chr1	173839766	173839766	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaattaatgtggctgaggttGaagcagaattaagtcaaaca	10	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	173839766	173839766	G	A	SNP	ZBTB37	ENST00000367701	human	ensembl	69_37n	1	known	missense	c.403	p.E135K	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB37	HGNC	ENSG00000185278	114	0	0	54	7	11.48	-	-	-	A	173839766	G	A	173839766	3	1	312	1	0	0	0	0	1	0	0	0	17634	1291	45	2	405	2	ZBTB37	1	173839766	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2603022	173839766	75410855	60	34439										
PAPPA2	0	genome.wustl.edu	37	chr1	176740264	176740264	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggcaccatctgcaaatatGaatgcaaaccagggtactat	9	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	176740264	176740264	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4663	p.E1555K	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	239	0	0	138	18	11.54	-	-	-	A	176740264	G	A	176740264	3	1	312	1	0	0	0	0	1	0	0	0	11506	1291	45	2	4778	2	PAPPA2	1	176740264	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2900498	176740264	72510357	61	34440										
ASTN1	0	genome.wustl.edu	37	chr1	176863943	176863943	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggtctctttcccgctcctCagactcatctgatggggagt	12	12	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	176863943	176863943	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2719	p.E907K	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	87	0	0	46	10	17.86	-	-	-	T	176863943	C	T	176863943	3	4	312	1	0	0	0	0	1	0	0	0	1068	835	29	2	1221	2	ASTN1	1	176863943	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	123679	176863943	72386678	62	34441										
CEP350	0	genome.wustl.edu	37	chr1	179989993	179989993	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaaatagttatgaacccatCaaagagtttcagaaagaagc	8	6	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	179989993	179989993	C	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.3084	p.I1028M	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	33	0	0	18	3	14.29	-	-	-	G	179989993	C	G	179989993	3	3	312	1	0	0	0	0	1	0	0	0	3283	816	29	2	3126	2	CEP350	1	179989993	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3126050	179989993	69260628	63	34442										
MR1	0	genome.wustl.edu	37	chr1	181018285	181018285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacgtggactcgcaccctatCaccacatatgacagtgtcac	7	14	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	181018285	181018285	C	G	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	missense	c.165	p.I55M	0.040	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	111	0	0	67	17	20.24	-	-	-	G	181018285	C	G	181018285	3	3	312	1	0	0	0	0	1	0	0	0	9824	816	29	2	171	2	MR1	1	181018285	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1028292	181018285	68232336	64	34443										
TPR	0	genome.wustl.edu	37	chr1	186286710	186286710	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttcctgctggctatcaatttCtaggcctgcttctgaactaa	7	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	186286710	186286710	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.6844	p.E2282Q	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	150	0	0	68	10	12.66	-	-	-	G	186286710	C	G	186286710	3	3	312	1	0	0	0	0	1	0	0	0	16512	922	32	2	259	2	TPR	1	186286710	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5268425	186286710	62963911	65	34444										
TPR	0	genome.wustl.edu	37	chr1	186307222	186307222	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtacctacgtccaattttCttaacttgagtaatagtttt	5	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	186307222	186307222	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.4305	p.K1435N	1.000	superfamily_tRNA-bd_arm	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	509	0	0	245	36	12.77	-	-	-	G	186307222	C	G	186307222	3	3	312	1	0	0	0	0	1	0	0	0	16512	912	32	2	2870	2	TPR	1	186307222	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	20512	186307222	62943399	66	34445										
CFHR2	0	genome.wustl.edu	37	chr1	196920050	196920050	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacaaacacatctggaaggtGatactgtacaaattatttgc	8	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	196920050	196920050	G	A	SNP	CFHR2	ENST00000367415	human	ensembl	69_37n	1	known	missense	c.322	p.D108N	0.485	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR2	HGNC	ENSG00000080910	444	0	0	245	33	11.87	-	-	-	A	196920050	G	A	196920050	3	1	312	1	0	0	0	0	1	0	0	0	3314	1290	45	2	332	2	CFHR2	1	196920050	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10612828	196920050	52330571	67	34446										
IGFN1	0	genome.wustl.edu	37	chr1	201176276	201176276	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgagatcaaagctgaagactCactgcaggaggcagatggta	13	7	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	201176276	201176276	C	T	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.2255	p.S752L	0.001	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	82	0	0	58	11	15.94	-	-	-	T	201176276	C	T	201176276	3	4	312	1	0	0	0	0	1	0	0	0	7644	838	29	2	2297	2	IGFN1	1	201176276	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4256226	201176276	48074345	68	34447										
PTPN7	0	genome.wustl.edu	37	chr1	202127408	202127408	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agggaccgaacgtccagcatCagagccacattggagccccg	12	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	202127408	202127408	C	G	SNP	PTPN7	ENST00000435759	human	ensembl	69_37n	-1	novel	missense	c.163	p.D55H	1.000	NULL	NULL	-	no_stop_codon	PTPN7	HGNC	ENSG00000143851	95	0	0	47	7	12.96	-	-	-	G	202127408	C	G	202127408	3	3	312	1	0	0	0	0	1	0	0	0	12876	813	29	2	970	2	PTPN7	1	202127408	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	951132	202127408	47123213	69	34448										
CHI3L1	0	genome.wustl.edu	37	chr1	203154338	203154338	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgagtgtgttgagcatgccGtagagcgtcacatcattcca	11	9	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	203154338	203154338	G	A	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	silent	c.231	p.Y77	0.027	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	98	0	0	79	20	20.2	-	-	-	A	203154338	G	A	203154338	2	1	312	1	0	0	0	0	0	0	0	1	3369	1140	40	1		1	CHI3L1	1	203154338	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1026930	203154338	46096283	70	34449										
ATP2B4	0	genome.wustl.edu	37	chr1	203652420	203652420	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggctgcacagtaatggaactGaggaagctcatggagctgcg	15	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	203652420	203652420	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	silent	c.87	p.L29	0.987	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	98	0	0	66	8	10.81	-	-	-	A	203652420	G	A	203652420	2	1	312	1	0	0	0	0	0	0	0	1	1146	1277	45	2		2	ATP2B4	1	203652420	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	498082	203652420	45598201	71	34450										
SLC41A1	0	genome.wustl.edu	37	chr1	205779621	205779621	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctctcttctttttgctttCtctcttcttctctaacttgg	3	13	6	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	205779621	205779621	C	T	SNP	SLC41A1	ENST00000484000	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.946	-	-	-	no_errors	SLC41A1	HGNC	ENSG00000133065	41	0	0	25	5	16.67	-	-	-	T	205779621	C	T	205779621	1	4	312	0	1	0	0	0	0	0	0	0	14718	928	32	2		2	SLC41A1	1	205779621	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2127201	205779621	43471000	72	34451										
SRGAP2	0	genome.wustl.edu	37	chr1	206603567	206603567	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgtatccggtttatcagcaGacacggtaagcaggatgaca	11	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	206603567	206603567	G	C	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	missense	c.1290	p.Q430H	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	217	0	0	126	20	13.7	-	-	-	C	206603567	G	C	206603567	3	2	312	1	0	0	0	0	1	0	0	0	15237	942	33	2	1332	2	SRGAP2	1	206603567	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	823946	206603567	42647054	73	34452										
IL24	0	genome.wustl.edu	37	chr1	207074880	207074880	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtccacaccctgctggagttCtacttgaaaactgttttcaa	7	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	207074880	207074880	C	G	SNP	IL24	ENST00000294984	human	ensembl	69_37n	1	known	missense	c.345	p.F115L	0.984	superfamily_4_helix_cytokine-like_core,prints_Interleukin-24	superfamily_4_helix_cytokine-like_core,prints_Interleukin-24	-	no_errors	IL24	HGNC	ENSG00000162892	192	0	0	118	20	14.29	-	-	-	G	207074880	C	G	207074880	3	3	312	1	0	0	0	0	1	0	0	0	7731	912	32	2	362	2	IL24	1	207074880	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	471313	207074880	42175741	74	34453										
PLXNA2	0	genome.wustl.edu	37	chr1	208213056	208213056	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atggcatcaatggggcccttCtccatctgctgcttgatggc	11	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	208213056	208213056	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	silent	c.4410	p.E1470	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	133	1	0.75	85	11	11.46	-	-	-	T	208213056	C	T	208213056	2	4	312	1	0	0	0	0	0	0	0	1	12194	912	32	2		2	PLXNA2	1	208213056	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1138176	208213056	41037565	75	34454										
CAMK1G	0	genome.wustl.edu	37	chr1	209773405	209773405	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgaagtgcatcaagaagtCacctgccttccgggacagca	10	12	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	209773405	209773405	C	T	SNP	CAMK1G	ENST00000009105	human	ensembl	69_37n	1	known	missense	c.170	p.S57L	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	106	0	0	71	9	11.25	-	-	-	T	209773405	C	T	209773405	3	4	312	1	0	0	0	0	1	0	0	0	2623	838	29	2	176	2	CAMK1G	1	209773405	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1560349	209773405	39477216	76	34455										
PROX1	0	genome.wustl.edu	37	chr1	214170683	214170683	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acagcactgattcggaaaatGatgaagatggtaacctgtct	10	7	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	214170683	214170683	G	C	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.805	p.D269H	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	77	0	0	43	6	12.24	-	-	-	C	214170683	G	C	214170683	3	2	312	1	0	0	0	0	1	0	0	0	12641	1290	45	2	807	2	PROX1	1	214170683	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4397278	214170683	35079938	77	34456										
DISP1	0	genome.wustl.edu	37	chr1	223177017	223177017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggtgttccggtcgtcccatCcttttgagcgttatgatgct	11	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	223177017	223177017	C	A	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.2278	p.P760T	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	140	0	0	82	14	14.58	-	-	-	A	223177017	C	A	223177017	3	1	312	1	0	0	0	0	1	0	0	0	4575	855	30	2	2304	2	DISP1	1	223177017	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9006334	223177017	26073604	78	34457										
CDC42BPA	0	genome.wustl.edu	37	chr1	227219069	227219069	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taagcctctttgggaacataGactgagcggtctctgaattt	10	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	227219069	227219069	G	C	SNP	CDC42BPA	ENST00000442054	human	ensembl	69_37n	-1	known	missense	c.1585	p.L529V	1.000	NULL	pfam_Citron,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_WD40_repeat_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDC42BPA	HGNC	ENSG00000143776	304	0	0	175	21	10.71	-	-	-	C	227219069	G	C	227219069	3	2	312	1	0	0	0	0	1	0	0	0	3101	929	33	2	1599	2	CDC42BPA	1	227219069	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4042052	227219069	22031552	79	34458										
PCNXL2	0	genome.wustl.edu	37	chr1	233136210	233136210	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcgtggcagatgaccaccttCttctcgaaggactggatggc	12	11	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	233136210	233136210	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	silent	c.5169	p.K1723	0.998	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	117	0	0	74	9	10.84	-	-	-	T	233136210	C	T	233136210	2	4	312	1	0	0	0	0	0	0	0	1	11665	912	32	2		2	PCNXL2	1	233136210	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5917141	233136210	16114411	80	34459										
TARBP1	0	genome.wustl.edu	37	chr1	234527427	234527427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggagcggataatgccctgttGaggaatttccacacaaacgt	11	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	234527427	234527427	G	C	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.4762	p.Q1588E	1.000	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	75	0	0	36	5	12.2	-	-	-	C	234527427	G	C	234527427	3	2	312	1	0	0	0	0	1	0	0	0	15647	1299	45	2	107	2	TARBP1	1	234527427	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1391217	234527427	14723194	81	34460										
LYST	0	genome.wustl.edu	37	chr1	235916501	235916501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgtcatatagagaggtctCtattagtcccagaataggaa	10	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	235916501	235916501	C	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.7303	p.E2435Q	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	83	0	0	41	8	16.33	-	-	-	G	235916501	C	G	235916501	3	3	312	1	0	0	0	0	1	0	0	0	9195	922	32	2	4214	2	LYST	1	235916501	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1389074	235916501	13334120	82	34461										
NID1	0	genome.wustl.edu	37	chr1	236201532	236201532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgttagcacacgtctggcggGaatccgtgttatagctgaaa	12	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	236201532	236201532	G	A	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.1157	p.S386F	0.935	smart_EGF-like_Ca-bd	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	123	0	0	70	11	13.58	-	-	-	A	236201532	G	A	236201532	3	1	312	1	0	0	0	0	1	0	0	0	10486	1174	41	2	2650	2	NID1	1	236201532	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	285031	236201532	13049089	83	34462										
GREM2	0	genome.wustl.edu	37	chr1	240656326	240656326	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caccggcactgcttcaccttCtggattttcttgagtcggaa	9	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	240656326	240656326	C	T	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	silent	c.450	p.Q150	1.000	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	39	0	0	13	5	27.78	-	-	-	T	240656326	C	T	240656326	2	4	312	1	0	0	0	0	0	0	0	1	6813	912	32	2		2	GREM2	1	240656326	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4454794	240656326	8594295	84	34463										
HNRNPU	0	genome.wustl.edu	37	chr1	245020071	245020071	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttctttcgggcagcaatctCaataaatttcccaagacact	5	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	245020071	245020071	C	G	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.1702	p.E568Q	1.000	pfam_Zeta_toxin_domain	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	133	0	0	64	12	15.58	-	-	-	G	245020071	C	G	245020071	3	3	312	1	0	0	0	0	1	0	0	0	7324	835	29	2	799	2	HNRNPU	1	245020071	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4363745	245020071	4230550	85	34464										
SCCPDH	0	genome.wustl.edu	37	chr1	246922379	246922379	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aactcaaaggttattccattCcttttatgggatctgatgtg	8	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	1	246922379	246922379	C	G	SNP	SCCPDH	ENST00000366510	human	ensembl	69_37n	1	known	missense	c.739	p.P247A	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653	529	0	0	286	48	14.33	-	-	-	G	246922379	C	G	246922379	3	3	312	1	0	0	0	0	1	0	0	0	13972	855	30	2	765	2	SCCPDH	1	246922379	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1902308	246922379	2328242	86	34465										
ALLC	0	genome.wustl.edu	37	chr2	3729280	3729280	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggagctgcagccactcctGaggagtttgaagccattgct	12	11	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	3729280	3729280	G	C	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	1	known	missense	c.355	p.E119Q	0.752	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	138	0	0	66	13	16.46	-	-	-	C	3729280	G	C	3729280	3	2	312	1	0	0	0	0	1	0	0	0	534	1291	45	2	373	2	ALLC	2	3729280	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		3729280	239470093	87	34466										
NTSR2	0	genome.wustl.edu	37	chr2	11798750	11798750	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggaagagttttctgaaggagGaggacacggcgttgtagaga	17	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	11798750	11798750	G	C	SNP	NTSR2	ENST00000306928	human	ensembl	69_37n	-1	known	missense	c.1088	p.S363C	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_NT2_rcpt,prints_NT_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NTSR2	HGNC	ENSG00000169006	199	0	0	99	12	10.81	-	-	-	C	11798750	G	C	11798750	3	2	312	1	0	0	0	0	1	0	0	0	10784	1174	41	2	148	2	NTSR2	2	11798750	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8069470	11798750	231400623	88	34467										
TP53I3	0	genome.wustl.edu	37	chr2	24305887	24305887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtactgagcctggcccccacCggggagcagagccatggctg	15	14	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	24305887	24305887	C	T	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	missense	c.274	p.G92S	0.902	superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	44	0	0	27	8	22.86	-	-	-	T	24305887	C	T	24305887	3	4	312	1	0	0	0	0	1	0	0	0	16483	652	23	1	740	1	TP53I3	2	24305887	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	12507137	24305887	218893486	89	34468										
NCOA1	0	genome.wustl.edu	37	chr2	24952396	24952396	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggattagatgtattatcagaGagatttccaccacaacaagc	8	8	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	24952396	24952396	G	C	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	missense	c.2913	p.E971D	1.000	pfam_Nuc_rcpt_coact_Ncoa-typ,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	181	0	0	89	18	16.82	-	-	-	C	24952396	G	C	24952396	3	2	312	1	0	0	0	0	1	0	0	0	10300	933	33	2	2963	2	NCOA1	2	24952396	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	646509	24952396	218246977	90	34469										
ADCY3	0	genome.wustl.edu	37	chr2	25141245	25141245	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggccacggtgacccccagGaccaacgtgtgcaccacaca	11	16	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	25141245	25141245	G	A	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	silent	c.612	p.V204	0.939	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	55	0	0	28	5	15.15	-	-	-	A	25141245	G	A	25141245	2	1	312	1	0	0	0	0	0	0	0	1	295	1161	41	2		2	ADCY3	2	25141245	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	188849	25141245	218058128	91	34470										
HADHA	0	genome.wustl.edu	37	chr2	26437956	26437956	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtctctctttggagagatCttcttatcagctagtccttt	7	9	5	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	26437956	26437956	C	G	SNP	HADHA	ENST00000380649	human	ensembl	69_37n	-1	known	missense	c.765	p.K255N	1.000	tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754	455	0	0	211	36	14.52	-	-	-	G	26437956	C	G	26437956	3	3	312	1	0	0	0	0	1	0	0	0	6994	912	32	2	1578	2	HADHA	2	26437956	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1296711	26437956	216761417	92	34471										
C2orf16	0	genome.wustl.edu	37	chr2	27802182	27802182	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttctcaaacatctttagcaGaaagagccactgcagatacc	7	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	27802182	27802182	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.2743	p.E915Q	0.002	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	129	0	0	67	10	12.99	-	-	-	C	27802182	G	C	27802182	3	2	312	1	0	0	0	0	1	0	0	0	2177	943	33	2	2745	2	C2orf16	2	27802182	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1364226	27802182	215397191	93	34472										
BRE	0	genome.wustl.edu	37	chr2	28268663	28268663	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatatccccacataccttctCaaggtaaaaatatatgattt	3	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	28268663	28268663	C	G	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	silent	c.567	p.L189	1.000	pfam_Brain/reproduct-express_prot	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	141	0	0	72	12	14.29	-	-	-	G	28268663	C	G	28268663	2	3	312	1	0	0	0	0	0	0	0	1	1517	813	29	2		2	BRE	2	28268663	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	466481	28268663	214930710	94	34473										
C2orf71	0	genome.wustl.edu	37	chr2	29296153	29296153	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gccaggctctctagctgcctCagagccctcaggaggcgttc	12	15	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	29296153	29296153	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.975	p.L325	0.975	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	73	0	0	49	6	10.91	-	-	-	T	29296153	C	T	29296153	2	4	312	1	0	0	0	0	0	0	0	1	2211	813	29	2		2	C2orf71	2	29296153	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1027490	29296153	213903220	95	34474										
LRPPRC	0	genome.wustl.edu	37	chr2	44123829	44123829	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caacaaaatcggggtttgttCagcaattgcaccacatctct	7	11	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	44123829	44123829	C	T	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.3844	p.E1282K	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	209	0	0	74	9	10.84	-	-	-	T	44123829	C	T	44123829	3	4	312	1	0	0	0	0	1	0	0	0	9031	835	29	2	356	2	LRPPRC	2	44123829	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14827676	44123829	199075544	96	34475										
LRPPRC	0	genome.wustl.edu	37	chr2	44126455	44126455	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgcaaactgattggccaatCtctccgccatgatgcttact	7	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	44126455	44126455	C	G	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.3728	p.R1243T	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	106	0	0	66	8	10.81	-	-	-	G	44126455	C	G	44126455	3	3	312	1	0	0	0	0	1	0	0	0	9031	913	32	2	476	2	LRPPRC	2	44126455	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2626	44126455	199072918	97	34476										
PSME4	0	genome.wustl.edu	37	chr2	54127040	54127040	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tagggcatcggcattcttttCctgttggcgtttaattcctt	9	9	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	54127040	54127040	C	G	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	missense	c.3400	p.E1134Q	0.993	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	512	0	0	225	43	16.04	-	-	-	G	54127040	C	G	54127040	3	3	312	1	0	0	0	0	1	0	0	0	12789	864	30	2	2203	2	PSME4	2	54127040	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10000585	54127040	189072333	98	34477										
REL	0	genome.wustl.edu	37	chr2	61145531	61145531	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggtttcttattgactagatGacatagaagttcgttttgtg	10	4	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	61145531	61145531	G	C	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	missense	c.643	p.D215H	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NF_Rel_dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	165	0	0	65	10	13.33	-	-	-	C	61145531	G	C	61145531	3	2	312	1	0	0	0	0	1	0	0	0	13298	1290	45	2	669	2	REL	2	61145531	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7018491	61145531	182053842	99	34478										
PELI1	0	genome.wustl.edu	37	chr2	64322141	64322141	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctttgtttccccagttatGatagccatgtacatggccgc	8	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	64322141	64322141	G	A	SNP	PELI1	ENST00000358912	human	ensembl	69_37n	-1	known	missense	c.952	p.H318Y	1.000	pfam_Pellino	pfam_Pellino	-	no_errors	PELI1	HGNC	ENSG00000197329	222	1	0.45	118	15	11.28	-	-	-	A	64322141	G	A	64322141	3	1	312	1	0	0	0	0	1	0	0	0	11794	1290	45	2	308	2	PELI1	2	64322141	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3176610	64322141	178877232	100	34479										
MXD1	0	genome.wustl.edu	37	chr2	70164430	70164430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcttcagcgagagcagcgaCacctgaagaggcagctggag	15	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	70164430	70164430	C	T	SNP	MXD1	ENST00000264444	human	ensembl	69_37n	1	known	missense	c.382	p.H128Y	0.996	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD1	HGNC	ENSG00000059728	82	0	0	39	22	36.07	-	-	-	T	70164430	C	T	70164430	3	4	312	1	0	0	0	0	1	0	0	0	10071	478	17	4	400	4	MXD1	2	70164430	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5842289	70164430	173034943	101	34480										
SMYD5	0	genome.wustl.edu	37	chr2	73451124	73451124	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctggcctctttgtgcttcaGagctgctgtgagtcatggcg	13	10	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	73451124	73451124	G	A	SNP	SMYD5	ENST00000389501	human	ensembl	69_37n	1	known	silent	c.933	p.Q311	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632	421	0	0	145	42	22.34	-	-	-	A	73451124	G	A	73451124	2	1	312	1	0	0	0	0	0	0	0	1	14914	933	33	2		2	SMYD5	2	73451124	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3286694	73451124	169748249	102	34481										
SMYD5	0	genome.wustl.edu	37	chr2	73452827	73452827	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacagccgccacaagatcctCaggtgccagctggggacatg	12	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	73452827	73452827	C	T	SNP	SMYD5	ENST00000389501	human	ensembl	69_37n	1	known	silent	c.1104	p.L368	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632	168	0	0	79	16	16.84	-	-	-	T	73452827	C	T	73452827	2	4	312	1	0	0	0	0	0	0	0	1	14914	813	29	2		2	SMYD5	2	73452827	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1703	73452827	169746546	103	34482										
TET3	0	genome.wustl.edu	37	chr2	74275429	74275429	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacccactcacacccaccctCagtggcttcttggagtcacc	6	18	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	74275429	74275429	C	G	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	silent	c.1980	p.L660	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	102	0	0	56	10	15.15	-	-	-	G	74275429	C	G	74275429	2	3	312	1	0	0	0	0	0	0	0	1	15866	813	29	2		2	TET3	2	74275429	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	822602	74275429	168923944	104	34483										
HK2	0	genome.wustl.edu	37	chr2	75104436	75104436	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctttgagaccaaagacatctCagacattgaagggtgagctt	10	8	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	75104436	75104436	C	T	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	missense	c.1019	p.S340L	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	138	0	0	84	15	15.15	-	-	-	T	75104436	C	T	75104436	3	4	312	1	0	0	0	0	1	0	0	0	7242	838	29	2	1049	2	HK2	2	75104436	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	829007	75104436	168094937	105	34484										
USP39	0	genome.wustl.edu	37	chr2	85852772	85852772	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgccgggtattgtgggactGaataacataaaggccaatga	12	7	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	85852772	85852772	G	C	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	silent	c.681	p.L227	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	176	0	0	112	13	10.4	-	-	-	C	85852772	G	C	85852772	2	2	312	1	0	0	0	0	0	0	0	1	17167	1277	45	2		2	USP39	2	85852772	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10748336	85852772	157346601	106	34485										
TMEM131	0	genome.wustl.edu	37	chr2	98428930	98428930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttcaaactctggcaggcttGaaattattgtagttctattg	8	6	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	98428930	98428930	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.1817	p.S606L	0.947	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	284	0	0	101	17	14.41	-	-	-	A	98428930	G	A	98428930	3	1	312	1	0	0	0	0	1	0	0	0	16139	1294	45	2	3934	2	TMEM131	2	98428930	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12576158	98428930	144770443	107	34486										
GLI2	0	genome.wustl.edu	37	chr2	121747939	121747939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggcctgtcaggacagcatCcagccccagcccttgccctc	9	19	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	121747939	121747939	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.4449	p.I1483M	0.990	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	71	0	0	47	9	16.07	-	-	-	G	121747939	C	G	121747939	3	3	312	1	0	0	0	0	1	0	0	0	6490	845	30	2	4499	2	GLI2	2	121747939	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	23319009	121747939	121451434	108	34487										
POLR2D	0	genome.wustl.edu	37	chr2	128605740	128605740	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatctgctgcagctcctcatCttcaaaccgtccctccaagc	5	17	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	128605740	128605740	C	G	SNP	POLR2D	ENST00000272645	human	ensembl	69_37n	-1	known	missense	c.370	p.D124H	1.000	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	POLR2D	HGNC	ENSG00000144231	265	0	0	136	22	13.92	-	-	-	G	128605740	C	G	128605740	3	3	312	1	0	0	0	0	1	0	0	0	12291	913	32	2	62	2	POLR2D	2	128605740	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6857801	128605740	114593633	109	34488										
LYPD1	0	genome.wustl.edu	37	chr2	133426009	133426009	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacttctttctgacacatgtCttgaacgttcaccgtgcaat	6	12	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	133426009	133426009	C	T	SNP	LYPD1	ENST00000397463	human	ensembl	69_37n	-1	known	missense	c.154	p.D52N	1.000	NULL	NULL	-	no_errors	LYPD1	HGNC	ENSG00000150551	118	0	0	69	9	11.39	-	-	-	T	133426009	C	T	133426009	3	4	312	1	0	0	0	0	1	0	0	0	9176	913	32	2	279	2	LYPD1	2	133426009	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4820269	133426009	109773364	110	34489										
MCM6	0	genome.wustl.edu	37	chr2	136622641	136622641	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatagatttttatcttgactCatctcaaacactttctccca	2	11	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	136622641	136622641	C	G	SNP	MCM6	ENST00000264156	human	ensembl	69_37n	-1	known	missense	c.1020	p.M340I	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003	377	0	0	137	53	27.89	-	-	-	G	136622641	C	G	136622641	3	3	312	1	0	0	0	0	1	0	0	0	9462	826	29	2	1489	2	MCM6	2	136622641	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3196632	136622641	106576732	111	34490										
NEB	0	genome.wustl.edu	37	chr2	152352825	152352825	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgattgtgtttgactcgctCcatctcgggagtgacagcta	11	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	152352825	152352825	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.24451	p.E8151Q	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	505	0	0	266	38	12.46	-	-	-	G	152352825	C	G	152352825	3	3	312	1	0	0	0	0	1	0	0	0	10374	864	30	2	1166	2	NEB	2	152352825	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	15730184	152352825	90846548	112	34491										
NEB	0	genome.wustl.edu	37	chr2	152472569	152472569	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggattggaatggcatccaGacgcaagtcatagccttcct	10	10	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	152472569	152472569	G	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.11236	p.L3746	0.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	171	0	0	83	17	16.83	-	-	-	A	152472569	G	A	152472569	2	1	312	1	0	0	0	0	0	0	0	1	10374	933	33	2		2	NEB	2	152472569	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	119744	152472569	90726804	113	34492										
FAP	0	genome.wustl.edu	37	chr2	163039979	163039979	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacccatttctatgaattttCtaaagtaaaagaaacaaatt	3	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	163039979	163039979	C	G	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	splice_site	c.1815-1	e21-1	1.000	-	-	-	no_errors	FAP	HGNC	ENSG00000078098	166	0	0	79	14	15.05	-	-	-	G	163039979	C	G	163039979	5	3	312	1	0	0	0	0	0	0	1	0	5719	927	32	2	492	2	FAP	2	163039979	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10567410	163039979	80159394	114	34493										
SCN2A	0	genome.wustl.edu	37	chr2	166172242	166172242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggaagtaggctgacatatGaaaagagattttcttctcca	9	6	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	166172242	166172242	G	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.1645	p.E549Q	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	40	0	0	10	3	23.08	-	-	-	C	166172242	G	C	166172242	3	2	312	1	0	0	0	0	1	0	0	0	14004	1291	45	2	1779	2	SCN2A	2	166172242	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3132263	166172242	77027131	115	34494										
LRP2	0	genome.wustl.edu	37	chr2	170029697	170029697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cggtaatttgttttgcagctGaattctgtgaagttgtcaca	10	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	170029697	170029697	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.11052	p.F3684L	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	328	0	0	190	30	13.51	-	-	-	C	170029697	G	C	170029697	3	2	312	1	0	0	0	0	1	0	0	0	9022	1281	45	2	3007	2	LRP2	2	170029697	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3857455	170029697	73169676	116	34495										
TLK1	0	genome.wustl.edu	37	chr2	171867908	171867908	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acacttcactaaagccacctCtaccaagcagatgaagtaat	5	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	171867908	171867908	C	G	SNP	TLK1	ENST00000431350	human	ensembl	69_37n	-1	known	missense	c.1391	p.R464T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK1	HGNC	ENSG00000198586	287	0	0	116	14	10.77	-	-	-	G	171867908	C	G	171867908	3	3	312	1	0	0	0	0	1	0	0	0	16038	913	32	2	941	2	TLK1	2	171867908	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1838211	171867908	71331465	117	34496										
SLC25A12	0	genome.wustl.edu	37	chr2	172683316	172683316	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gattactcatacctgtctctGaagttctgccaggttgtaag	9	9	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	172683316	172683316	G	A	SNP	SLC25A12	ENST00000422440	human	ensembl	69_37n	-1	known	nonsense	c.922	p.Q308*	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840	182	0	0	78	11	12.36	-	-	-	A	172683316	G	A	172683316	4	1	312	1	0	0	0	0	0	1	0	0	14563	1299	45	2	1154	2	SLC25A12	2	172683316	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	815408	172683316	70516057	118	34497										
TTN	0	genome.wustl.edu	37	chr2	179455523	179455523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atttgccagttacttctcgaCgttccatatagtagccagtt	7	10	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	179455523	179455523	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.53225	p.R17742H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	164	0	0	90	12	11.65	-	-	-	T	179455523	C	T	179455523	3	4	312	1	0	0	0	0	1	0	0	0	16832	536	19	1	47286	1	TTN	2	179455523	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6772207	179455523	63743850	119	34498										
SESTD1	0	genome.wustl.edu	37	chr2	179981441	179981441	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcttttccagcaaaactttcGtttcttgagcatcatcgccc	6	13	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	179981441	179981441	G	A	SNP	SESTD1	ENST00000446758	human	ensembl	69_37n	-1	known	nonsense	c.538	p.R180*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SESTD1	HGNC	ENSG00000187231	236	0	0	102	12	10.53	-	-	-	A	179981441	G	A	179981441	4	1	312	1	0	0	0	0	0	1	0	0	14215	1145	40	1	505	1	SESTD1	2	179981441	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	525918	179981441	63217932	120	34499										
INPP1	0	genome.wustl.edu	37	chr2	191233908	191233908	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctgtggacttcagtgtgtCaccattttaattggtgtcta	9	9	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	191233908	191233908	C	T	SNP	INPP1	ENST00000322522	human	ensembl	69_37n	1	known	silent	c.546	p.V182	0.996	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	INPP1	HGNC	ENSG00000151689	176	0	0	120	16	11.76	-	-	-	T	191233908	C	T	191233908	2	4	312	1	0	0	0	0	0	0	0	1	7805	813	29	2		2	INPP1	2	191233908	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11252467	191233908	51965465	121	34500										
SGOL2	0	genome.wustl.edu	37	chr2	201436072	201436072	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atcttcctggcttatcttctGagtctgccagagaacctaat	7	11	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	201436072	201436072	G	A	SNP	SGOL2	ENST00000357799	human	ensembl	69_37n	1	known	missense	c.1003	p.E335K	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	53	0	0	23	11	32.35	-	-	-	A	201436072	G	A	201436072	3	1	312	1	0	0	0	0	1	0	0	0	14305	1291	45	2	1025	2	SGOL2	2	201436072	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10202164	201436072	41763301	122	34501										
ALS2	0	genome.wustl.edu	37	chr2	202614505	202614505	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caaaggtattgctaccccatGagtaaacctatcaaaaaaac	5	10	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	202614505	202614505	G	A	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	missense	c.1745	p.S582L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,prints_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	182	0	0	69	11	13.75	-	-	-	A	202614505	G	A	202614505	3	1	312	1	0	0	0	0	1	0	0	0	550	1294	45	2	3336	2	ALS2	2	202614505	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1178433	202614505	40584868	123	34502										
TUBA4A	0	genome.wustl.edu	37	chr2	220115764	220115764	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggtgtaggttgggcgctcGatgtctaggttgcggcggca	18	7	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	220115764	220115764	G	A	SNP	TUBA4A	ENST00000248437	human	ensembl	69_37n	-1	known	silent	c.657	p.I219	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA4A	HGNC	ENSG00000127824	300	0	0	147	54	26.87	-	-	-	A	220115764	G	A	220115764	2	1	312	1	0	0	0	0	0	0	0	1	16846	1048	37	1		1	TUBA4A	2	220115764	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	17501259	220115764	23083609	124	34503										
CUL3	0	genome.wustl.edu	37	chr2	225378295	225378295	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcctcaaaatcttcttcataGactgatcttccttcgagacc	5	13	5	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	225378295	225378295	G	A	SNP	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	silent	c.600	p.V200	0.997	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	142	0	0	58	7	10.77	-	-	-	A	225378295	G	A	225378295	2	1	312	1	0	0	0	0	0	0	0	1	4087	929	33	2		2	CUL3	2	225378295	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5262531	225378295	17821078	125	34504										
SP140	0	genome.wustl.edu	37	chr2	231155266	231155266	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagggaattttacataagaaGaaattgcagcaaggtaggtt	11	3	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	231155266	231155266	G	T	SNP	SP140	ENST00000392045	human	ensembl	69_37n	1	known	missense	c.1812	p.K604N	0.358	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	484	0	0	226	34	13.08	-	-	-	T	231155266	G	T	231155266	3	4	312	1	0	0	0	0	1	0	0	0	15051	933	33	2	2003	2	SP140	2	231155266	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5776971	231155266	12044107	126	34505										
HJURP	0	genome.wustl.edu	37	chr2	234746277	234746277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaatcacttttctcttccatCctgtaagacgtgttctctcc	4	13	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	234746277	234746277	C	A	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.2193	p.R731S	0.117	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	253	0	0	100	12	10.71	-	-	-	A	234746277	C	A	234746277	3	1	312	1	0	0	0	0	1	0	0	0	7240	854	30	2	57	2	HJURP	2	234746277	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3591011	234746277	8453096	127	34506										
HJURP	0	genome.wustl.edu	37	chr2	234749380	234749380	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggggttctgatagcctgggTctttttgcagggaactgatg	15	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	234749380	234749380	T	A	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.2046	p.R682S	0.005	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	123	0	0	62	11	15.07	-	-	-	A	234749380	T	A	234749380	3	1	312	1	0	0	0	0	1	0	0	0	7240	1664	58	5	208	5	HJURP	2	234749380	Missense_Mutation	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09	3103	234749380	8449993	128	34507										
SCLY	0	genome.wustl.edu	37	chr2	238990391	238990391	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccaaggtgagcgggcaggcaGaggtggacgacatcctcgcg	17	11	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	238990391	238990391	G	C	SNP	SCLY	ENST00000254663	human	ensembl	69_37n	1	known	missense	c.550	p.E184Q	0.999	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	-	no_errors	SCLY	HGNC	ENSG00000132330	140	0	0	49	13	20.97	-	-	-	C	238990391	G	C	238990391	3	2	312	1	0	0	0	0	1	0	0	0	13995	943	33	2	544	2	SCLY	2	238990391	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4241011	238990391	4208982	129	34508										
KIF1A	0	genome.wustl.edu	37	chr2	241676565	241676565	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatcagggactcgtcggtctCtggagtgtttcggatgcggc	16	9	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	2	241676565	241676565	C	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	nonsense	c.3922	p.E1308*	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	232	0	0	129	17	11.64	-	-	-	A	241676565	C	A	241676565	4	1	312	1	0	0	0	0	0	1	0	0	8335	922	32	2	1501	2	KIF1A	2	241676565	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2686174	241676565	1522808	130	34509										
ATP2B2	0	genome.wustl.edu	37	chr3	10392112	10392112	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcgttgcggatcctcctgttGaactccttgccctcgaggca	10	14	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	10392112	10392112	G	C	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.2286	p.F762L	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	128	0	0	63	14	18.18	-	-	-	C	10392112	G	C	10392112	3	2	312	1	0	0	0	0	1	0	0	0	1144	1281	45	2	1481	2	ATP2B2	3	10392112	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		10392112	187630318	131	34510										
C3orf19	0	genome.wustl.edu	37	chr3	14706596	14706596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgagaaaggatttgccagatCtgctggagatggataaaaat	12	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	14706596	14706596	C	T	SNP	C3orf19	ENST00000383794	human	ensembl	69_37n	1	known	silent	c.547	p.L183	0.998	NULL	NULL	-	no_errors	C3orf19	HGNC	ENSG00000154781	359	1	0.28	166	35	17.41	-	-	-	T	14706596	C	T	14706596	2	4	312	1	0	0	0	0	0	0	0	1	2232	912	32	2		2	C3orf19	3	14706596	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4314484	14706596	183315834	132	34511										
SATB1	0	genome.wustl.edu	37	chr3	18438718	18438718	+	Missense_Mutation	SNP	T	T	A													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtttgtaccaccttccaaatTcttgacattttgctgctgag							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	18438718	18438718	T	A	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.704	p.E235V	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	620	0	0	244	42	14.69	-	-	-	A	18438718	T	A	18438718	3	1	312	1	0	0	0	0	1	0	0	0	13940	1783	62	5	1611	5	SATB1	3	18438718	Missense_Mutation	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09	3732122	18438718	179583712	133	34512	278	2								
SATB1	0	genome.wustl.edu	37	chr3	18438719	18438719	+	Missense_Mutation	SNP	C	C	G													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttgtaccaccttccaaattCttgacattttgctgctgaga							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	18438719	18438719	C	G	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.703	p.E235Q	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	612	0	0	239	41	14.64	-	-	-	G	18438719	C	G	18438719	3	3	312	1	0	0	0	0	1	0	0	0	13940	922	32	2	1612	2	SATB1	3	18438719	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1	18438719	179583711	134	34513	278	2								
SATB1	0	genome.wustl.edu	37	chr3	18456713	18456713	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgttcgggaggcaagtcttCtagtttggggcaactatttg	13	6	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	18456713	18456713	C	G	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.529	p.E177Q	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	151	0	0	67	12	15.19	-	-	-	G	18456713	C	G	18456713	3	3	312	1	0	0	0	0	1	0	0	0	13940	922	32	2	1790	2	SATB1	3	18456713	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	17994	18456713	179565717	135	34514										
SCN5A	0	genome.wustl.edu	37	chr3	38646307	38646307	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaagacatccgttttctcctCttgcttcttctctcatggct	6	13	5	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	38646307	38646307	C	G	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.1431	p.K477N	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	414	0	0	160	30	15.71	-	-	-	G	38646307	C	G	38646307	3	3	312	1	0	0	0	0	1	0	0	0	14010	912	32	2	4691	2	SCN5A	3	38646307	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	20189594	38646307	159376123	136	34515										
TTC21A	0	genome.wustl.edu	37	chr3	39179860	39179860	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggcctggaagtacagtcatCacgccaaccctgccattggt	10	13	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	39179860	39179860	C	A	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.3802	p.H1268N	0.998	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	146	0	0	59	21	26.25	-	-	-	A	39179860	C	A	39179860	3	1	312	1	0	0	0	0	1	0	0	0	16784	826	29	2	3908	2	TTC21A	3	39179860	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	533553	39179860	158842570	137	34516										
XIRP1	0	genome.wustl.edu	37	chr3	39226263	39226263	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggaggctagacatggagctGagtgccttgtgcacagcctc	14	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	39226263	39226263	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	silent	c.4674	p.L1558	0.581	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	126	0	0	48	11	18.64	-	-	-	A	39226263	G	A	39226263	2	1	312	1	0	0	0	0	0	0	0	1	17526	1277	45	2		2	XIRP1	3	39226263	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	46403	39226263	158796167	138	34517										
ZNF619	0	genome.wustl.edu	37	chr3	40529818	40529818	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctattgatattcctctggtCttgtcttgtataagttgtta	7	6	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	40529818	40529818	C	G	SNP	ZNF619	ENST00000520737	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ZNF619	HGNC	ENSG00000177873	53	0	0	19	4	17.39	-	-	-	G	40529818	C	G	40529818	1	3	312	0	1	0	0	0	0	0	0	0	18139	928	32	2		2	ZNF619	3	40529818	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1303555	40529818	157492612	139	34518										
LRRC2	0	genome.wustl.edu	37	chr3	46592974	46592974	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacttctccaaggcgctcttCtcaagcctttccacctcctt	4	17	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	46592974	46592974	C	T	SNP	LRRC2	ENST00000296144	human	ensembl	69_37n	-1	known	silent	c.108	p.E36	0.850	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC2	HGNC	ENSG00000163827	262	0	0	84	21	20	-	-	-	T	46592974	C	T	46592974	2	4	312	1	0	0	0	0	0	0	0	1	9042	912	32	2		2	LRRC2	3	46592974	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6063156	46592974	151429456	140	34519										
RNF123	0	genome.wustl.edu	37	chr3	49753337	49753337	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgccacctgctttgacctctCggtcagcctgctgcgtgtct	10	15	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	49753337	49753337	C	G	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.3233	p.S1078W	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	159	0	0	78	18	18.75	-	-	-	G	49753337	C	G	49753337	3	3	312	1	0	0	0	0	1	0	0	0	13519	893	31	3	3359	3	RNF123	3	49753337	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3160363	49753337	148269093	141	34520										
PPM1M	0	genome.wustl.edu	37	chr3	52283691	52283691	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggatggtcttcacaggttctCaaagctggcccagatgctga	12	10	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	52283691	52283691	C	G	SNP	PPM1M	ENST00000457351	human	ensembl	69_37n	1	known	nonsense	c.1241	p.S414*	0.910	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1M	HGNC	ENSG00000164088	53	0	0	30	7	18.92	-	-	-	G	52283691	C	G	52283691	4	3	312	1	0	0	0	0	0	1	0	0	12422	838	29	2	788	2	PPM1M	3	52283691	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2530354	52283691	145738739	142	34521										
PBRM1	0	genome.wustl.edu	37	chr3	52637660	52637660	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgagtgccggtgaaagaaGaatctctccatttttgcaga	11	8	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	52637660	52637660	G	C	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	missense	c.2656	p.L886V	1.000	superfamily_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	208	0	0	95	15	13.51	-	-	-	C	52637660	G	C	52637660	3	2	312	1	0	0	0	0	1	0	0	0	11564	942	33	2	2300	2	PBRM1	3	52637660	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	353969	52637660	145384770	143	34522										
ITIH3	0	genome.wustl.edu	37	chr3	52839834	52839834	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcttttcagccacaccggtGagccccgccatgtcctacct	9	17	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	52839834	52839834	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	69_37n	1	known	silent	c.1884	p.V628	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267	41	0	0	15	7	31.82	-	-	-	A	52839834	G	A	52839834	2	1	312	1	0	0	0	0	0	0	0	1	7959	1277	45	2		2	ITIH3	3	52839834	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	202174	52839834	145182596	144	34523										
CACNA1D	0	genome.wustl.edu	37	chr3	53766067	53766067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caattgatgactatagagaaGaggatgaagacaaggacccc	11	7	0	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	53766067	53766067	G	C	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2491	p.E831Q	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	158	0	0	60	7	10.45	-	-	-	C	53766067	G	C	53766067	3	2	312	1	0	0	0	0	1	0	0	0	2566	943	33	2	2673	2	CACNA1D	3	53766067	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	926233	53766067	144256363	145	34524										
ARL6	0	genome.wustl.edu	37	chr3	97503846	97503846	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgatagtagtgatagattaaGaatggttgtggccaaagaag	13	2	0	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	97503846	97503846	G	C	SNP	ARL6	ENST00000335979	human	ensembl	69_37n	1	known	missense	c.302	p.R101T	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL6	HGNC	ENSG00000113966	445	0	0	215	31	12.6	-	-	-	C	97503846	G	C	97503846	3	2	312	1	0	0	0	0	1	0	0	0	945	942	33	2	316	2	ARL6	3	97503846	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	43737779	97503846	100518584	146	34525										
CLDND1	0	genome.wustl.edu	37	chr3	98237836	98237836	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attttgtgaccacatcaaatGactctggaacaagaacaatt	6	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	98237836	98237836	G	A	SNP	CLDND1	ENST00000437922	human	ensembl	69_37n	-1	known	missense	c.365	p.S122L	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND1	HGNC	ENSG00000080822	147	0	0	71	13	15.48	-	-	-	A	98237836	G	A	98237836	3	1	312	1	0	0	0	0	1	0	0	0	3523	1294	45	2	477	2	CLDND1	3	98237836	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	733990	98237836	99784594	147	34526										
GPR128	0	genome.wustl.edu	37	chr3	100362199	100362199	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatacagtcagcaaatttctCttcagaaaatgcggtggggc	10	8	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	100362199	100362199	C	T	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	missense	c.788	p.S263F	0.003	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	298	0	0	161	29	15.26	-	-	-	T	100362199	C	T	100362199	3	4	312	1	0	0	0	0	1	0	0	0	6691	913	32	2	814	2	GPR128	3	100362199	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2124363	100362199	97660231	148	34527										
MYH15	0	genome.wustl.edu	37	chr3	108133098	108133098	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttggcatcctccaagtcttCtgttctctggatgacattgt	8	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	108133098	108133098	C	G	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.4186	p.E1396Q	1.000	pfam_Myosin_tail,superfamily_Lambda_DNA-bd_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	355	0	0	229	27	10.51	-	-	-	G	108133098	C	G	108133098	3	3	312	1	0	0	0	0	1	0	0	0	10106	922	32	2	1702	2	MYH15	3	108133098	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7770899	108133098	89889332	149	34528										
MYH15	0	genome.wustl.edu	37	chr3	108224632	108224632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	actcccttttacctcagcctCgatataagcattctcaccat	3	15	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	108224632	108224632	C	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.193	p.E65K	0.976	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	315	0	0	149	32	17.68	-	-	-	T	108224632	C	T	108224632	3	4	312	1	0	0	0	0	1	0	0	0	10106	893	31	1	5807	1	MYH15	3	108224632	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	91534	108224632	89797798	150	34529										
WDR52	0	genome.wustl.edu	37	chr3	113046579	113046579	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taaggtgacatggtgcaggtCagataatttcatctgagtat	11	5	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	113046579	113046579	C	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.4204	p.D1402N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	305	0	0	155	39	20.1	-	-	-	T	113046579	C	T	113046579	3	4	312	1	0	0	0	0	1	0	0	0	17401	826	29	2	1396	2	WDR52	3	113046579	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4821947	113046579	84975851	151	34530										
COX17	0	genome.wustl.edu	37	chr3	119396138	119396138	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	actcaggcggggcagggtttGagtcaaccagacccggcatc	14	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	119396138	119396138	G	C	SNP	COX17	ENST00000261070	human	ensembl	69_37n	-1	known	nonsense	c.20	p.S7*	0.640	superfamily_MTCP1	pfam_Cyt_c_oxidase_Cu-chaperone,superfamily_MTCP1	-	no_errors	COX17	HGNC	ENSG00000138495	34	0	0	32	5	13.51	-	-	-	C	119396138	G	C	119396138	4	2	312	1	0	0	0	0	0	1	0	0	3796	1294	45	2	179	2	COX17	3	119396138	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6349559	119396138	78626292	152	34531										
GOLGB1	0	genome.wustl.edu	37	chr3	121409645	121409645	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctttcgaaatttctccagctCattccacaggtgatctctct	5	13	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	121409645	121409645	C	T	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.8551	p.E2851K	1.000	superfamily_STAT_TF_coiled-coil	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	156	0	0	81	9	10	-	-	-	T	121409645	C	T	121409645	3	4	312	1	0	0	0	0	1	0	0	0	6614	835	29	2	1264	2	GOLGB1	3	121409645	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2013507	121409645	76612785	153	34532										
CD86	0	genome.wustl.edu	37	chr3	121825137	121825137	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catctatacacggttacccaGaacctaagaagatgagtgtt	8	9	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	121825137	121825137	G	A	SNP	CD86	ENST00000330540	human	ensembl	69_37n	1	known	missense	c.493	p.E165K	0.832	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD86	HGNC	ENSG00000114013	146	0	0	84	11	11.58	-	-	-	A	121825137	G	A	121825137	3	1	312	1	0	0	0	0	1	0	0	0	3072	943	33	2	507	2	CD86	3	121825137	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	415492	121825137	76197293	154	34533										
TRH	0	genome.wustl.edu	37	chr3	129694818	129694818	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgccaggtggagcgcctcctCttcctccgggaaaacatcca	10	16	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	129694818	129694818	C	G	SNP	TRH	ENST00000302649	human	ensembl	69_37n	1	known	silent	c.159	p.L53	0.768	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893	39	0	0	21	5	19.23	-	-	-	G	129694818	C	G	129694818	2	3	312	1	0	0	0	0	0	0	0	1	16574	900	32	2		2	TRH	3	129694818	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7869681	129694818	68327612	155	34534										
SLC9A9	0	genome.wustl.edu	37	chr3	143185984	143185984	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acatcatttgtttgggctgaGattctgtgttccgaatagct	10	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	143185984	143185984	G	A	SNP	SLC9A9	ENST00000316549	human	ensembl	69_37n	-1	known	missense	c.1364	p.S455F	0.998	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804	259	0	0	128	18	12.33	-	-	-	A	143185984	G	A	143185984	3	1	312	1	0	0	0	0	1	0	0	0	14810	942	33	2	593	2	SLC9A9	3	143185984	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	13491166	143185984	54836446	156	34535										
PLOD2	0	genome.wustl.edu	37	chr3	145794663	145794663	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttccaaattcatgtctattaGaaatgtacataaatacaccc	3	9	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	145794663	145794663	G	C	SNP	PLOD2	ENST00000282903	human	ensembl	69_37n	-1	known	missense	c.1583	p.S528C	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	152	0	0	57	11	16.18	-	-	-	C	145794663	G	C	145794663	3	2	312	1	0	0	0	0	1	0	0	0	12176	942	33	2	717	2	PLOD2	3	145794663	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2608679	145794663	52227767	157	34536										
CP	0	genome.wustl.edu	37	chr3	148930334	148930334	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ataaactttatctccagtttCagctttgataatagggccta	6	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	148930334	148930334	C	T	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.298	p.E100K	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	261	0	0	153	21	12.07	-	-	-	T	148930334	C	T	148930334	3	4	312	1	0	0	0	0	1	0	0	0	3817	835	29	2	2971	2	CP	3	148930334	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3135671	148930334	49092096	158	34537										
TIPARP	0	genome.wustl.edu	37	chr3	156396104	156396104	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctggacaccagtgataagctGagtactgagctctttcagga	11	9	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	156396104	156396104	G	A	SNP	TIPARP	ENST00000295924	human	ensembl	69_37n	1	known	silent	c.618	p.L206	0.990	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659	173	0	0	111	13	10.4	-	-	-	A	156396104	G	A	156396104	2	1	312	1	0	0	0	0	0	0	0	1	16019	1277	45	2		2	TIPARP	3	156396104	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7465770	156396104	41626326	159	34538										
PPM1L	0	genome.wustl.edu	37	chr3	160786886	160786886	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cattttacagaggctgccctGacaatataacagtcatggtg	9	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	160786886	160786886	G	A	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	1	known	missense	c.1024	p.D342N	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	58	0	0	35	5	12.5	-	-	-	A	160786886	G	A	160786886	3	1	312	1	0	0	0	0	1	0	0	0	12421	1290	45	2	1038	2	PPM1L	3	160786886	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4390782	160786886	37235544	160	34539										
WDR49	0	genome.wustl.edu	37	chr3	167250737	167250737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcattctctgtgctattgttCcatagaacaatttctccatc	5	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	167250737	167250737	C	A	SNP	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	missense	c.927	p.W309C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	267	0	0	122	26	17.57	-	-	-	A	167250737	C	A	167250737	3	1	312	1	0	0	0	0	1	0	0	0	17399	856	30	2	1198	2	WDR49	3	167250737	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6463851	167250737	30771693	161	34540										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	160	0	0	63	19	22.89	-	-	-	G	178952085	A	G	178952085	3	3	312	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	11701348	178952085	19070345	162	34541										
MCCC1	0	genome.wustl.edu	37	chr3	182738007	182738007	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtatttggggactggaatgtCaatctcaatacttccttcct	8	9	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	182738007	182738007	C	A	SNP	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	missense	c.1888	p.D630Y	0.991	pfscan_Biotin_lipoyl	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	162	0	0	112	13	10.4	-	-	-	A	182738007	C	A	182738007	3	1	312	1	0	0	0	0	1	0	0	0	9445	826	29	2	301	2	MCCC1	3	182738007	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3785922	182738007	15284423	163	34542										
EIF2B5	0	genome.wustl.edu	37	chr3	183855691	183855691	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctgtcctttataggttgaGacggaagctagaaaaaaatg	10	6	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	183855691	183855691	G	C	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	missense	c.512	p.R171T	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	104	0	0	56	9	13.85	-	-	-	C	183855691	G	C	183855691	3	2	312	1	0	0	0	0	1	0	0	0	5039	942	33	2	526	2	EIF2B5	3	183855691	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1117684	183855691	14166739	164	34543										
THPO	0	genome.wustl.edu	37	chr3	184091276	184091276	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagctgccccaggagggatGagaggcaagtgggtcccagt	16	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	184091276	184091276	G	A	SNP	THPO	ENST00000204615	human	ensembl	69_37n	-1	known	missense	c.323	p.S108L	0.975	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534	108	0	0	48	12	20	-	-	-	A	184091276	G	A	184091276	3	1	312	1	0	0	0	0	1	0	0	0	15967	1294	45	2	746	2	THPO	3	184091276	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	235585	184091276	13931154	165	34544										
SENP2	0	genome.wustl.edu	37	chr3	185337233	185337233	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggaccaaaggggtaaatctCtttgaacaagaaattattct	8	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	185337233	185337233	C	G	SNP	SENP2	ENST00000296257	human	ensembl	69_37n	1	known	silent	c.1389	p.L463	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP2	HGNC	ENSG00000163904	167	0	0	96	12	11.11	-	-	-	G	185337233	C	G	185337233	2	3	312	1	0	0	0	0	0	0	0	1	14135	900	32	2		2	SENP2	3	185337233	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1245957	185337233	12685197	166	34545										
ATP13A5	0	genome.wustl.edu	37	chr3	193081941	193081941	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcttcttgcaaggggcatggGatgcagttggcccacactct	13	11	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	193081941	193081941	G	A	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	silent	c.192	p.I64	0.009	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	75	0	0	43	26	37.68	-	-	-	A	193081941	G	A	193081941	2	1	312	1	0	0	0	0	0	0	0	1	1131	1164	41	2		2	ATP13A5	3	193081941	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7744708	193081941	4940489	167	34546										
DLG1	0	genome.wustl.edu	37	chr3	196771505	196771505	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catgagttttcatagcttttCttttgccggaacccagatgt	8	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	3	196771505	196771505	C	G	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.2770	p.E924Q	1.000	pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	284	0	0	148	32	17.78	-	-	-	G	196771505	C	G	196771505	3	3	312	1	0	0	0	0	1	0	0	0	4590	922	32	2	14	2	DLG1	3	196771505	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3689564	196771505	1250925	168	34547										
WHSC2	0	genome.wustl.edu	37	chr4	1991547	1991547	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtcgtcagggcgtttttgttCaagtactggcactccagtgg	13	9	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	1991547	1991547	C	G	SNP	WHSC2	ENST00000382882	human	ensembl	69_37n	-1	known	missense	c.465	p.L155F	0.999	NULL	NULL	-	no_errors	WHSC2	HGNC	ENSG00000185049	110	0	0	98	15	13.27	-	-	-	G	1991547	C	G	1991547	3	3	312	1	0	0	0	0	1	0	0	0	17461	825	29	2	1190	2	WHSC2	4	1991547	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09		1991547	189162729	169	34548										
EVC2	0	genome.wustl.edu	37	chr4	5630358	5630358	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggccctgcacacgggtctctGatgactggaggttctggacc	14	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	5630358	5630358	G	A	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	missense	c.1814	p.S605L	0.010	pfam_EVC2-like	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	159	0	0	96	14	12.73	-	-	-	A	5630358	G	A	5630358	3	1	312	1	0	0	0	0	1	0	0	0	5323	1294	45	2	2156	2	EVC2	4	5630358	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3638811	5630358	185523918	170	34549										
EVC2	0	genome.wustl.edu	37	chr4	5667277	5667277	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catgtttcccttcagacactGatagcgaaccatgaggaaga	9	10	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	5667277	5667277	G	A	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	nonsense	c.970	p.Q324*	0.000	pfam_EVC2-like	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	160	0	0	80	13	13.98	-	-	-	A	5667277	G	A	5667277	4	1	312	1	0	0	0	0	0	1	0	0	5323	1299	45	2	3016	2	EVC2	4	5667277	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	36919	5667277	185486999	171	34550										
PGM2	0	genome.wustl.edu	37	chr4	37848851	37848851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aactggctttaagtggatggGaaacagagccaaacagctaa	11	7	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	37848851	37848851	G	A	SNP	PGM2	ENST00000381967	human	ensembl	69_37n	1	known	missense	c.1217	p.G406E	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299	210	1	0.47	139	19	12.03	-	-	-	A	37848851	G	A	37848851	3	1	312	1	0	0	0	0	1	0	0	0	11872	1174	41	2	1255	2	PGM2	4	37848851	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	32181574	37848851	153305425	172	34551										
WDR19	0	genome.wustl.edu	37	chr4	39217529	39217529	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctacccaaaggggctcacttCatgttttcctgaccaagctt	7	13	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	39217529	39217529	C	T	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	missense	c.1030	p.H344Y	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	166	0	0	130	16	10.96	-	-	-	T	39217529	C	T	39217529	3	4	312	1	0	0	0	0	1	0	0	0	17376	826	29	2	1072	2	WDR19	4	39217529	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1368678	39217529	151936747	173	34552										
RBM47	0	genome.wustl.edu	37	chr4	40427930	40427930	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggtcaccagcctcagtatgtCtggtagacgtcggggatggg	16	9	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	40427930	40427930	C	G	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	missense	c.1773	p.Q591H	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	115	0	0	70	24	25.53	-	-	-	G	40427930	C	G	40427930	3	3	312	1	0	0	0	0	1	0	0	0	13224	912	32	2	12	2	RBM47	4	40427930	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1210401	40427930	150726346	174	34553										
RBM47	0	genome.wustl.edu	37	chr4	40440508	40440508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggcggcccgggcggatctCgtagttgttgagctcacgca	15	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	40440508	40440508	C	T	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	missense	c.403	p.E135K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	24	0	0	25	4	13.79	-	-	-	T	40440508	C	T	40440508	3	4	312	1	0	0	0	0	1	0	0	0	13224	893	31	1	1394	1	RBM47	4	40440508	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	12578	40440508	150713768	175	34554										
GABRA2	0	genome.wustl.edu	37	chr4	46252416	46252416	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaaaactggaaaaactattCtggacattctgtcaattttg	6	7	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	46252416	46252416	C	T	SNP	GABRA2	ENST00000540012	human	ensembl	69_37n	-1	known	missense	c.1280	p.R427K	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834	352	0	0	168	43	20.38	-	-	-	T	46252416	C	T	46252416	3	4	312	1	0	0	0	0	1	0	0	0	6210	913	32	2	94	2	GABRA2	4	46252416	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5811908	46252416	144901860	176	34555										
CORIN	0	genome.wustl.edu	37	chr4	47676480	47676480	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaatcaaggcagggattgtaGaggcatctttggtctccttc	12	8	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	47676480	47676480	G	C	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	silent	c.1287	p.L429	0.971	pirsf_Peptidase_S1A_corin	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	329	0	0	190	31	13.96	-	-	-	C	47676480	G	C	47676480	2	2	312	1	0	0	0	0	0	0	0	1	3782	929	33	2		2	CORIN	4	47676480	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1424064	47676480	143477796	177	34556										
LRRC66	0	genome.wustl.edu	37	chr4	52862139	52862139	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taacactccttggcagccgtCtctgcttcttcctgagacca	7	15	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	52862139	52862139	C	T	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	missense	c.1049	p.R350K	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	61	0	0	42	11	20.75	-	-	-	T	52862139	C	T	52862139	3	4	312	1	0	0	0	0	1	0	0	0	9084	913	32	2	1597	2	LRRC66	4	52862139	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5185659	52862139	138292137	178	34557										
ADAMTS3	0	genome.wustl.edu	37	chr4	73185063	73185063	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acatactggatatatcttttCagttcttgaccactgcatcg	6	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	73185063	73185063	C	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	silent	c.1338	p.L446	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	124	0	0	76	11	12.64	-	-	-	A	73185063	C	A	73185063	2	1	312	1	0	0	0	0	0	0	0	1	267	813	29	2		2	ADAMTS3	4	73185063	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	20322924	73185063	117969213	179	34558										
SDAD1	0	genome.wustl.edu	37	chr4	76898816	76898816	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacctttcgcagaagtttatCatggcaacgaaaaagttcaa	7	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	76898816	76898816	C	T	SNP	SDAD1	ENST00000356260	human	ensembl	69_37n	-1	known	missense	c.388	p.D130N	1.000	superfamily_ARM-type_fold	pfam_SDA1,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	221	1	0.45	121	42	25.77	-	-	-	T	76898816	C	T	76898816	3	4	312	1	0	0	0	0	1	0	0	0	14038	826	29	2	1751	2	SDAD1	4	76898816	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3713753	76898816	114255460	180	34559										
PTPN13	0	genome.wustl.edu	37	chr4	87684080	87684080	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttctcaagattccaggactGagagtgccagcttgtctcaa	10	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	87684080	87684080	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.3754	p.E1252K	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	103	0	0	63	10	13.7	-	-	-	A	87684080	G	A	87684080	3	1	312	1	0	0	0	0	1	0	0	0	12863	1291	45	2	3844	2	PTPN13	4	87684080	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10785264	87684080	103470196	181	34560										
ABCG2	0	genome.wustl.edu	37	chr4	89060991	89060991	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aactggttttcgacaaggtaGaaagccactcttcagtttta	8	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	89060991	89060991	G	A	SNP	ABCG2	ENST00000237612	human	ensembl	69_37n	-1	known	silent	c.157	p.L53	0.034	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG2	HGNC	ENSG00000118777	182	0	0	89	18	16.82	-	-	-	A	89060991	G	A	89060991	2	1	312	1	0	0	0	0	0	0	0	1	69	933	33	2		2	ABCG2	4	89060991	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1376911	89060991	102093285	182	34561										
GRID2	0	genome.wustl.edu	37	chr4	94032024	94032024	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgacaccatgagaatagaaGaactgaatcgctatcgagac	9	8	0	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	94032024	94032024	G	C	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.655	p.E219Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	183	0	0	90	13	12.62	-	-	-	C	94032024	G	C	94032024	3	2	312	1	0	0	0	0	1	0	0	0	6823	943	33	2	669	2	GRID2	4	94032024	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4971033	94032024	97122252	183	34562										
TACR3	0	genome.wustl.edu	37	chr4	104577395	104577395	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgatacttgtcacaggtatCtcctgggatttctcctcccc	7	13	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	104577395	104577395	C	G	SNP	TACR3	ENST00000304883	human	ensembl	69_37n	-1	known	missense	c.844	p.D282H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836	180	1	0.55	77	37	31.9	-	-	-	G	104577395	C	G	104577395	3	3	312	1	0	0	0	0	1	0	0	0	15599	913	32	2	565	2	TACR3	4	104577395	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10545371	104577395	86576881	184	34563										
SMARCA5	0	genome.wustl.edu	37	chr4	144457714	144457714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgagaaaatgttgtaatcatCcatatctctttgatggagca	8	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	144457714	144457714	C	T	SNP	SMARCA5	ENST00000283131	human	ensembl	69_37n	1	known	missense	c.1378	p.P460S	1.000	pfam_SNF2_N,pfam_HDA_complex_subunit-2/3	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147	208	0	0	104	14	11.86	-	-	-	T	144457714	C	T	144457714	3	4	312	1	0	0	0	0	1	0	0	0	14860	855	30	2	1420	2	SMARCA5	4	144457714	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	39880319	144457714	46696562	185	34564										
LRBA	0	genome.wustl.edu	37	chr4	151850194	151850194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggataatgaaattcatttcCagatcaaactgtcctcctac	5	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	151850194	151850194	C	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	silent	c.240	p.L80	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	131	0	0	63	19	22.89	-	-	-	T	151850194	C	T	151850194	2	4	312	1	0	0	0	0	0	0	0	1	8997	581	21	4		4	LRBA	4	151850194	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7392480	151850194	39304082	186	34565										
ADAM29	0	genome.wustl.edu	37	chr4	175898228	175898228	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggcgcaaatactgcaagtGagacttgctacaaagaattg	10	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	175898228	175898228	G	A	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.1552	p.E518K	0.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	130	0	0	47	13	21.67	-	-	-	A	175898228	G	A	175898228	3	1	312	1	0	0	0	0	1	0	0	0	247	1291	45	2	1554	2	ADAM29	4	175898228	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	24048034	175898228	15256048	187	34566										
TLR3	0	genome.wustl.edu	37	chr4	186998036	186998036	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtaggatttaacaccatctCaaaactggagccagaattgt	8	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	4	186998036	186998036	C	G	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	nonsense	c.263	p.S88*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	238	0	0	122	20	14.08	-	-	-	G	186998036	C	G	186998036	4	3	312	1	0	0	0	0	0	1	0	0	16047	838	29	2	265	2	TLR3	4	186998036	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11099808	186998036	4156240	188	34567										
ADAMTS16	0	genome.wustl.edu	37	chr5	5237177	5237177	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgggactccatgctcggagGatagccgtaatgtttgtata	12	7	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	5237177	5237177	G	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.2119	p.D707H	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	349	0	0	132	69	34.33	-	-	-	C	5237177	G	C	5237177	3	2	312	1	0	0	0	0	1	0	0	0	261	1174	41	2	2173	2	ADAMTS16	5	5237177	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		5237177	175678083	189	34568										
PRDM9	0	genome.wustl.edu	37	chr5	23521163	23521163	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcgtcattcagtaatgaatCtagtttgaaagaattgtcaa	9	5	4	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	23521163	23521163	C	G	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.383	p.S128C	0.001	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	225	0	0	141	64	31.22	-	-	-	G	23521163	C	G	23521163	3	3	312	1	0	0	0	0	1	0	0	0	12544	913	32	2	401	2	PRDM9	5	23521163	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	18283986	23521163	157394097	190	34569										
SPEF2	0	genome.wustl.edu	37	chr5	35763751	35763751	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agtccaactttgaggccgatGaaaagttggtcatggacacc	11	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	35763751	35763751	G	A	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	missense	c.3748	p.E1250K	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	249	0	0	109	58	34.73	-	-	-	A	35763751	G	A	35763751	3	1	312	1	0	0	0	0	1	0	0	0	15126	1291	45	2	3871	2	SPEF2	5	35763751	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12242588	35763751	145151509	191	34570										
WDR70	0	genome.wustl.edu	37	chr5	37379655	37379655	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accatgggcttcacggggttCggtgagtgactgccccaggc	15	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	37379655	37379655	C	T	SNP	WDR70	ENST00000265107	human	ensembl	69_37n	1	known	silent	c.90	p.F30	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068	45	0	0	55	9	14.06	-	-	-	T	37379655	C	T	37379655	2	4	312	1	0	0	0	0	0	0	0	1	17418	898	31	1		1	WDR70	5	37379655	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1615904	37379655	143535605	192	34571										
C9	0	genome.wustl.edu	37	chr5	39316109	39316109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttcttcgtaatgttcggttCtgaaatttttctcgcctttg	8	8	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	39316109	39316109	C	T	SNP	C9	ENST00000263408	human	ensembl	69_37n	-1	known	missense	c.638	p.R213K	0.537	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C9	HGNC	ENSG00000113600	148	0	0	74	14	15.91	-	-	-	T	39316109	C	T	39316109	3	4	312	1	0	0	0	0	1	0	0	0	2468	913	32	2	1065	2	C9	5	39316109	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1936454	39316109	141599151	193	34572										
HEATR7B2	0	genome.wustl.edu	37	chr5	41009477	41009477	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccactggaggctggcttttCagccagcgccttccacaatg	10	15	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	41009477	41009477	C	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	nonsense	c.3325	p.E1109*	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	114	0	0	79	22	21.57	-	-	-	A	41009477	C	A	41009477	4	1	312	1	0	0	0	0	0	1	0	0	7086	835	29	2	1476	2	HEATR7B2	5	41009477	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1693368	41009477	139905783	194	34573										
PLCXD3	0	genome.wustl.edu	37	chr5	41313815	41313815	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaatcggcagtgacaatattGatgccactctctcctggctt	8	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	41313815	41313815	G	C	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	missense	c.870	p.I290M	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	141	0	0	102	14	12.07	-	-	-	C	41313815	G	C	41313815	3	2	312	1	0	0	0	0	1	0	0	0	12117	1280	45	2	99	2	PLCXD3	5	41313815	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	304338	41313815	139601445	195	34574										
NNT	0	genome.wustl.edu	37	chr5	43624200	43624200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagcaaagtcgatgggtgcaAttgttcgaggatttgacaca	12	7	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	43624200	43624200	A	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	missense	c.754	p.I252V	0.936	pfam_AlaDH/PNT_NAD(H)-bd,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	550	0	0	289	86	22.93	-	-	-	G	43624200	A	G	43624200	3	3	312	1	0	0	0	0	1	0	0	0	10582	101	4	5	772	5	NNT	5	43624200	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	2310385	43624200	137291060	196	34575										
IPO11	0	genome.wustl.edu	37	chr5	61763034	61763034	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attcctgcaagaagtttcttCtggcaatgaagctgcaattt	8	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	61763034	61763034	C	G	SNP	IPO11	ENST00000409296	human	ensembl	69_37n	1	known	missense	c.713	p.S238C	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200	381	0	0	155	33	17.46	-	-	-	G	61763034	C	G	61763034	3	3	312	1	0	0	0	0	1	0	0	0	7847	913	32	2	735	2	IPO11	5	61763034	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	18138834	61763034	119152226	197	34576										
HEXB	0	genome.wustl.edu	37	chr5	74016965	74016965	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtggaatagctgcacaacctCtttatgctggatattgtaac	9	8	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	74016965	74016965	C	G	SNP	HEXB	ENST00000261416	human	ensembl	69_37n	1	known	missense	c.1636	p.L546V	0.996	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXB	HGNC	ENSG00000049860	151	0	0	73	12	14.12	-	-	-	G	74016965	C	G	74016965	3	3	312	1	0	0	0	0	1	0	0	0	7125	913	32	2	1690	2	HEXB	5	74016965	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	12253931	74016965	106898295	198	34577										
PAPD4	0	genome.wustl.edu	37	chr5	78919257	78919257	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagatgtgttccaccttttcGagaaattgcatttttagaac	7	8	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	78919257	78919257	G	C	SNP	PAPD4	ENST00000296783	human	ensembl	69_37n	1	known	missense	c.410	p.R137P	1.000	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329	217	0	0	108	12	10	-	-	-	C	78919257	G	C	78919257	3	2	312	1	0	0	0	0	1	0	0	0	11497	1058	37	3	420	3	PAPD4	5	78919257	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4902292	78919257	101996003	199	34578										
GPR98	0	genome.wustl.edu	37	chr5	90055367	90055367	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgttgttattccacaaaatGattctccatttggagtattt	6	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	90055367	90055367	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.12082	p.D4028N	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	537	0	0	202	73	26.35	-	-	-	A	90055367	G	A	90055367	3	1	312	1	0	0	0	0	1	0	0	0	6772	1290	45	2	12312	2	GPR98	5	90055367	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	11136110	90055367	90859893	200	34579										
ANKRD32	0	genome.wustl.edu	37	chr5	93988976	93988976	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtggtctaaatacatgtaGaaggaaattaagaaaaaaga	9	2	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	93988976	93988976	G	C	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	1	known	splice_site	c.883-1	e7-1	0.997	-	-	-	no_errors	ANKRD32	HGNC	ENSG00000133302	197	0	0	65	22	25.29	-	-	-	C	93988976	G	C	93988976	5	2	312	1	0	0	0	0	0	0	1	0	659	956	33	2	908	2	ANKRD32	5	93988976	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3933609	93988976	86926284	201	34580										
ARSK	0	genome.wustl.edu	37	chr5	94918723	94918723	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggactaaagtcagagtgatgGaaagggattggcagaataca	14	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	94918723	94918723	G	T	SNP	ARSK	ENST00000380009	human	ensembl	69_37n	1	known	nonsense	c.520	p.E174*	0.124	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	194	0	0	94	30	24.19	-	-	-	T	94918723	G	T	94918723	4	4	312	1	0	0	0	0	0	1	0	0	1000	1175	41	2	534	2	ARSK	5	94918723	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	929747	94918723	85996537	202	34581										
PCSK1	0	genome.wustl.edu	37	chr5	95730639	95730639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgtaggacgtgtacacacGaggctgcttcatatgctctg	12	9	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	95730639	95730639	G	A	SNP	PCSK1	ENST00000311106	human	ensembl	69_37n	-1	known	missense	c.1813	p.R605C	0.925	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426	429	0	0	205	31	13.14	-	-	-	A	95730639	G	A	95730639	3	1	312	1	0	0	0	0	1	0	0	0	11673	1058	37	1	456	1	PCSK1	5	95730639	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	811916	95730639	85184621	203	34582										
PRR16	0	genome.wustl.edu	37	chr5	120021713	120021713	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggatgagatgactgacagctCcaaaacggacacgctgaata	11	9	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	120021713	120021713	C	G	SNP	PRR16	ENST00000407149	human	ensembl	69_37n	1	known	missense	c.224	p.S75C	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838	166	0	0	80	19	19.19	-	-	-	G	120021713	C	G	120021713	3	3	312	1	0	0	0	0	1	0	0	0	12670	855	30	2	161	2	PRR16	5	120021713	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	24291074	120021713	60893547	204	34583										
PHAX	0	genome.wustl.edu	37	chr5	125944095	125944095	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacctgatagcccgagtagtGaggattattggtaacaaaaa	11	6	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	125944095	125944095	G	A	SNP	PHAX	ENST00000297540	human	ensembl	69_37n	1	known	silent	c.750	p.V250	0.999	pfam_PHAX_RNA-binding_domain	pfam_PHAX_RNA-binding_domain	-	no_errors	PHAX	HGNC	ENSG00000164902	291	0	0	146	28	16.09	-	-	-	A	125944095	G	A	125944095	2	1	312	1	0	0	0	0	0	0	0	1	11887	1277	45	2		2	PHAX	5	125944095	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5922382	125944095	54971165	205	34584										
RAPGEF6	0	genome.wustl.edu	37	chr5	130764670	130764670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caaattatgcctctgaggctGagttacaatcttcgatggaa	9	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	130764670	130764670	G	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.4705	p.Q1569E	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	183	0	0	70	28	28.57	-	-	-	C	130764670	G	C	130764670	3	2	312	1	0	0	0	0	1	0	0	0	13131	1299	45	2	108	2	RAPGEF6	5	130764670	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4820575	130764670	50150590	206	34585										
SLC22A5	0	genome.wustl.edu	37	chr5	131721159	131721159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgctgctggtggcgctgacGatgccgggggtgctatgcgt	18	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	131721159	131721159	G	A	SNP	SLC22A5	ENST00000448810	human	ensembl	69_37n	1	known	missense	c.140	p.R47Q	0.002	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC22A5	HGNC	ENSG00000197375	385	0	0	200	29	12.5	-	-	-	A	131721159	G	A	131721159	3	1	312	1	0	0	0	0	1	0	0	0	14546	1045	37	1	806	1	SLC22A5	5	131721159	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	956489	131721159	49194101	207	34586										
SKP1	0	genome.wustl.edu	37	chr5	133494205	133494205	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaggtcttgcgaatctcctCaggagttttccccttgatca	9	11	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	133494205	133494205	C	G	SNP	SKP1	ENST00000353411	human	ensembl	69_37n	-1	known	missense	c.397	p.E133Q	1.000	pfam_Skp1_comp_dimer,superfamily_Skp1_comp_dimer,pirsf_E3_ubiquit_lig_SCF_Skp	pfam_Skp1_comp_dimer,pfam_Skp1_comp_POZ,superfamily_Skp1_comp_dimer,superfamily_BTB/POZ_fold,smart_Skp1_comp,pirsf_E3_ubiquit_lig_SCF_Skp	-	no_errors	SKP1	HGNC	ENSG00000113558	309	0	0	108	44	28.95	-	-	-	G	133494205	C	G	133494205	3	3	312	1	0	0	0	0	1	0	0	0	14450	835	29	2	129	2	SKP1	5	133494205	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1773046	133494205	47421055	208	34587										
NRG2	0	genome.wustl.edu	37	chr5	139267074	139267074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtcccgtctggctcttcatCttcttcaacttgggccgggt	10	13	6	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	139267074	139267074	C	G	SNP	NRG2	ENST00000545385	human	ensembl	69_37n	-1	known	missense	c.723	p.K241N	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like	-	no_errors	NRG2	HGNC	ENSG00000158458	211	0	0	121	14	10.37	-	-	-	G	139267074	C	G	139267074	3	3	312	1	0	0	0	0	1	0	0	0	10721	912	32	2	1956	2	NRG2	5	139267074	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5772869	139267074	41648186	209	34588										
PCDHA11	0	genome.wustl.edu	37	chr5	140249093	140249093	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacccgccggtgttctcgctCagagaacaaaagctgctgat	10	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	140249093	140249093	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	silent	c.405	p.L135	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	122	0	0	58	10	14.71	-	-	-	T	140249093	C	T	140249093	2	4	312	1	0	0	0	0	0	0	0	1	11594	813	29	2		2	PCDHA11	5	140249093	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	982019	140249093	40666167	210	34589										
PCDHGA4	0	genome.wustl.edu	37	chr5	140736007	140736007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acagaacactggacagggaaGaagtctcagaatataacatc	9	8	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	140736007	140736007	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	missense	c.1240	p.E414K	0.942	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	101	0	0	68	12	14.81	-	-	-	A	140736007	G	A	140736007	3	1	312	1	0	0	0	0	1	0	0	0	11629	943	33	2	1242	2	PCDHGA4	5	140736007	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	486914	140736007	40179253	211	34590										
AFAP1L1	0	genome.wustl.edu	37	chr5	148689611	148689611	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccaaggacagccggcacaaGaggcacgagctgcgtttcac	12	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	148689611	148689611	G	A	SNP	AFAP1L1	ENST00000296721	human	ensembl	69_37n	1	known	silent	c.840	p.K280	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510	98	0	0	31	16	33.33	-	-	-	A	148689611	G	A	148689611	2	1	312	1	0	0	0	0	0	0	0	1	354	933	33	2		2	AFAP1L1	5	148689611	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7953604	148689611	32225649	212	34591										
CSNK1A1	0	genome.wustl.edu	37	chr5	148889467	148889467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ataaaacttcaacaggcgtgGacatcttcttttcactaatc	5	10	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	148889467	148889467	G	C	SNP	CSNK1A1	ENST00000515768	human	ensembl	69_37n	-1	known	missense	c.809	p.S270C	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1	HGNC	ENSG00000113712	418	0	0	176	31	14.98	-	-	-	C	148889467	G	C	148889467	3	2	312	1	0	0	0	0	1	0	0	0	3982	1174	41	2	304	2	CSNK1A1	5	148889467	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	199856	148889467	32025793	213	34592										
NDST1	0	genome.wustl.edu	37	chr5	149927847	149927847	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgaggtgattaccgccggctCtgacgcatcctcgaagctgc	12	13	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	149927847	149927847	C	G	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	missense	c.2213	p.S738C	0.994	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	58	0	0	31	6	15.79	-	-	-	G	149927847	C	G	149927847	3	3	312	1	0	0	0	0	1	0	0	0	10327	913	32	2	2255	2	NDST1	5	149927847	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1038380	149927847	30987413	214	34593										
FAM114A2	0	genome.wustl.edu	37	chr5	153409138	153409138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attctctttggcatttgtctCtcctacaagagggaggggat	11	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	153409138	153409138	C	G	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.406	p.E136Q	0.738	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	198	0	0	79	15	15.96	-	-	-	G	153409138	C	G	153409138	3	3	312	1	0	0	0	0	1	0	0	0	5444	922	32	2	1151	2	FAM114A2	5	153409138	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3481291	153409138	27506122	215	34594										
KIF4B	0	genome.wustl.edu	37	chr5	154396044	154396044	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatttgattggagagctggtCtcctccaaaatacatgtcac	8	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	154396044	154396044	C	G	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	silent	c.2625	p.V875	0.998	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	163	0	0	87	12	12.12	-	-	-	G	154396044	C	G	154396044	2	3	312	1	0	0	0	0	0	0	0	1	8356	900	32	2		2	KIF4B	5	154396044	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	986906	154396044	26519216	216	34595										
ITK	0	genome.wustl.edu	37	chr5	156675886	156675886	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgatgtgggaagttttcagtGaaggcaaaatcccgtatgaa	12	5	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	156675886	156675886	G	A	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.1660	p.E554K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	190	0	0	117	24	17.02	-	-	-	A	156675886	G	A	156675886	3	1	312	1	0	0	0	0	1	0	0	0	7963	1291	45	2	1722	2	ITK	5	156675886	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2279842	156675886	24239374	217	34596										
LCP2	0	genome.wustl.edu	37	chr5	169677830	169677830	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttatctttgtacaacaccatGaggacatatggattggttgt	9	6	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	169677830	169677830	G	C	SNP	LCP2	ENST00000046794	human	ensembl	69_37n	-1	known	silent	c.1383	p.L461	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	483	0	0	251	39	13.4	-	-	-	C	169677830	G	C	169677830	2	2	312	1	0	0	0	0	0	0	0	1	8746	1277	45	2		2	LCP2	5	169677830	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	13001944	169677830	11237430	218	34597										
RANBP17	0	genome.wustl.edu	37	chr5	170720958	170720958	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggtcagtatccaggcctctCctggggctcatcctgctcaa	10	14	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	170720958	170720958	C	G	SNP	RANBP17	ENST00000523189	human	ensembl	69_37n	1	known	silent	c.3015	p.L1005	1.000	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	202	0	0	123	19	13.38	-	-	-	G	170720958	C	G	170720958	2	3	312	1	0	0	0	0	0	0	0	1	13110	842	30	2		2	RANBP17	5	170720958	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1043128	170720958	10194302	219	34598										
FAF2	0	genome.wustl.edu	37	chr5	175875421	175875421	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcggcaaaatggcggcgcctGaggagcgggatctaacccag	16	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	175875421	175875421	G	C	SNP	FAF2	ENST00000261942	human	ensembl	69_37n	1	known	missense	c.13	p.E5Q	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,pfscan_UBX	-	no_errors	FAF2	HGNC	ENSG00000113194	44	0	0	27	4	12.9	-	-	-	C	175875421	G	C	175875421	3	2	312	1	0	0	0	0	1	0	0	0	5410	1291	45	2	15	2	FAF2	5	175875421	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5154463	175875421	5039839	220	34599										
NSD1	0	genome.wustl.edu	37	chr5	176709505	176709505	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgtgggtgagcttatagatGaagaagaatgcagagctcga	14	4	0	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	5	176709505	176709505	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.5932	p.E1978K	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	404	0	0	163	27	14.21	-	-	-	A	176709505	G	A	176709505	3	1	312	1	0	0	0	0	1	0	0	0	10742	1291	45	2	6002	2	NSD1	5	176709505	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	834084	176709505	4205755	221	34600										
FOXF2	0	genome.wustl.edu	37	chr6	1390570	1390570	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcagcgagatctaccagttcCtgcaggcgcgcttccccttc	9	16	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	1390570	1390570	C	T	SNP	FOXF2	ENST00000259806	human	ensembl	69_37n	1	known	silent	c.388	p.L130	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273	44	0	0	37	6	13.95	-	-	-	T	1390570	C	T	1390570	2	4	312	1	0	0	0	0	0	0	0	1	6054	680	24	4		4	FOXF2	6	1390570	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09		1390570	169724497	222	34601										
PRPF4B	0	genome.wustl.edu	37	chr6	4032971	4032971	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acgacgagaaccagagaggaGacgactttcttctccaaggt	11	10	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	4032971	4032971	G	C	SNP	PRPF4B	ENST00000489943	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	PRPF4B	HGNC	ENSG00000112739	34	0	0	29	4	12.12	-	-	-	C	4032971	G	C	4032971	5	2	312	1	0	0	0	0	0	0	1	0	12654	942	33	2	1226	2	PRPF4B	6	4032971	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2642401	4032971	167082096	223	34602										
FARS2	0	genome.wustl.edu	37	chr6	5368981	5368981	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgctgggcaaatcctaccctCaggacgaccacagcaacctc	8	16	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	5368981	5368981	C	G	SNP	FARS2	ENST00000274680	human	ensembl	69_37n	1	known	missense	c.178	p.Q60E	0.939	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982	42	0	0	30	4	11.76	-	-	-	G	5368981	C	G	5368981	3	3	312	1	0	0	0	0	1	0	0	0	5724	827	29	2	180	2	FARS2	6	5368981	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1336010	5368981	165746086	224	34603										
FARS2	0	genome.wustl.edu	37	chr6	5404833	5404833	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctttgaacaaagttctcgctCtgcgcataaacaagagacac	7	11	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	5404833	5404833	C	T	SNP	FARS2	ENST00000274680	human	ensembl	69_37n	1	known	missense	c.671	p.S224F	1.000	pfscan_aa-tRNA-synth_II	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982	166	0	0	88	10	10.2	-	-	-	T	5404833	C	T	5404833	3	4	312	1	0	0	0	0	1	0	0	0	5724	913	32	2	677	2	FARS2	6	5404833	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	35852	5404833	165710234	225	34604										
NUP153	0	genome.wustl.edu	37	chr6	17675248	17675248	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgactggttttaaggattGaagaattcccaagtgactgc	11	7	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	17675248	17675248	G	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.740	p.S247L	1.000	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	196	0	0	189	24	11.27	-	-	-	A	17675248	G	A	17675248	3	1	312	1	0	0	0	0	1	0	0	0	10828	1294	45	2	3759	2	NUP153	6	17675248	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12270415	17675248	153439819	226	34605										
DEK	0	genome.wustl.edu	37	chr6	18264149	18264149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctctgggaccgggcatttCgggttctttctcggacgcgg	14	12	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	18264149	18264149	C	T	SNP	DEK	ENST00000397239	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	0.237	NULL	pfam_DEK_C,pfam_SAP_DNA-bd,smart_SAP_DNA-bd	-	no_errors	DEK	HGNC	ENSG00000124795	83	0	0	77	13	14.44	-	-	-	T	18264149	C	T	18264149	3	4	312	1	0	0	0	0	1	0	0	0	4460	893	31	1	1097	1	DEK	6	18264149	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	588901	18264149	152850918	227	34606										
FAM65B	0	genome.wustl.edu	37	chr6	24818812	24818812	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caagctgctttctggagctgGaggtttgtctttgttagtgc	13	7	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	24818812	24818812	G	C	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	silent	c.2973	p.L991	0.007	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	152	0	0	112	22	16.42	-	-	-	C	24818812	G	C	24818812	2	2	312	1	0	0	0	0	0	0	0	1	5645	1161	41	2		2	FAM65B	6	24818812	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6554663	24818812	146296255	228	34607										
HIST1H4D	0	genome.wustl.edu	37	chr6	26188994	26188994	+	Nonstop_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtgtactgtagaggtaagctCagccgccgaagccataaaga	12	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	26188994	26188994	C	A	SNP	HIST1H4D	ENST00000340756	human	ensembl	69_37n	-1	known	nonstop	c.311	p.*104L	0.565	NULL	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4D	HGNC	ENSG00000188987	110	0	0	113	22	16.18	-	-	-	A	26188994	C	A	26188994	4	1	312	1	0	0	0	0	0	0	0	0	7219	837	29	2	4	2	HIST1H4D	6	26188994	Nonstop_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1370182	26188994	144926073	229	34608										
HIST1H2AG	0	genome.wustl.edu	37	chr6	27100956	27100956	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gccgagtgcaccgcctgctcCgcaaaggcaactatgccgag	12	15	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	27100956	27100956	C	A	SNP	HIST1H2AG	ENST00000359193	human	ensembl	69_37n	1	known	missense	c.106	p.R36S	0.996	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787	87	0	0	106	14	11.67	-	-	-	A	27100956	C	A	27100956	3	1	312	1	0	0	0	0	1	0	0	0	7184	652	23	3	108	3	HIST1H2AG	6	27100956	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	911962	27100956	144014111	230	34609										
ZNF193	0	genome.wustl.edu	37	chr6	28195500	28195500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agacacagacaagaagtcctCtgtaaagagatggtgcctct	10	9	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	28195500	28195500	C	T	SNP	ZNF193	ENST00000252207	human	ensembl	69_37n	1	known	silent	c.453	p.L151	0.002	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF193	HGNC	ENSG00000137185	62	0	0	26	5	16.13	-	-	-	T	28195500	C	T	28195500	2	4	312	1	0	0	0	0	0	0	0	1	17853	900	32	2		2	ZNF193	6	28195500	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1094544	28195500	142919567	231	34610										
MAS1L	0	genome.wustl.edu	37	chr6	29455213	29455213	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacagagacacacctcaaagGagaagggagacaatatggcc	12	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	29455213	29455213	G	C	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.467	p.S156C	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	43	0	0	18	4	18.18	-	-	-	C	29455213	G	C	29455213	3	2	312	1	0	0	0	0	1	0	0	0	9392	1174	41	2	671	2	MAS1L	6	29455213	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1259713	29455213	141659854	232	34611										
PPP1R10	0	genome.wustl.edu	37	chr6	30574587	30574587	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtactgctctgagagcggatGacagccatccagtcgctgac	12	12	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	30574587	30574587	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	69_37n	-1	known	silent	c.429	p.V143	0.991	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569	37	0	0	30	5	14.29	-	-	-	A	30574587	G	A	30574587	2	1	312	1	0	0	0	0	0	0	0	1	12429	1277	45	2		2	PPP1R10	6	30574587	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1119374	30574587	140540480	233	34612										
MDC1	0	genome.wustl.edu	37	chr6	30672142	30672142	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaactggctcaggggtcttGacagaggacctatttgtcct	11	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	30672142	30672142	G	C	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	silent	c.4818	p.V1606	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	223	0	0	119	39	24.53	-	-	-	C	30672142	G	C	30672142	2	2	312	1	0	0	0	0	0	0	0	1	9474	1277	45	2		2	MDC1	6	30672142	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	97555	30672142	140442925	234	34613										
ITPR3	0	genome.wustl.edu	37	chr6	33608321	33608321	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacctggacaacccccctaaGaagttccgtggtaagacctc	9	14	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	33608321	33608321	G	C	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.150	p.K50N	1.000	pfam_Ins145_P3_rcpt,prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	181	0	0	127	28	18.06	-	-	-	C	33608321	G	C	33608321	3	2	312	1	0	0	0	0	1	0	0	0	7976	933	33	2	156	2	ITPR3	6	33608321	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2936179	33608321	137506746	235	34614										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34831948	34831948	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagtggacagtgatggcagtGatagctttgtgatgctcttg	14	6	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	34831948	34831948	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	missense	c.3385	p.D1129N	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	167	0	0	108	14	11.48	-	-	-	A	34831948	G	A	34831948	3	1	312	1	0	0	0	0	1	0	0	0	17065	1290	45	2	3443	2	UHRF1BP1	6	34831948	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1223627	34831948	136283119	236	34615										
CLIC5	0	genome.wustl.edu	37	chr6	45917119	45917119	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtgcaggtcagctggctttCtgtagagagagcaagattca	13	7	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	45917119	45917119	C	T	SNP	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	splice_site	c.651-1	e3-1	1.000	-	-	-	no_errors	CLIC5	HGNC	ENSG00000112782	286	0	0	162	35	17.77	-	-	-	T	45917119	C	T	45917119	5	4	312	1	0	0	0	0	0	0	1	0	3559	927	32	2	598	2	CLIC5	6	45917119	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11085171	45917119	125197948	237	34616										
DST	0	genome.wustl.edu	37	chr6	56468735	56468735	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatccttgagcttctcatctCttggcaatgttgatgcccac	8	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	56468735	56468735	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.10592	p.R3531T	0.002	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	216	0	0	87	17	16.35	-	-	-	G	56468735	C	G	56468735	3	3	312	1	0	0	0	0	1	0	0	0	4818	928	32	2		2	DST	6	56468735	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10551616	56468735	114646332	238	34617										
COL19A1	0	genome.wustl.edu	37	chr6	70852698	70852698	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctccatgggacccagaggaCcgccaggagatgttgtatgt	14	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	70852698	70852698	C	A	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.1612	p.P538T	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	252	0	0	128	18	12.16	-	-	-	A	70852698	C	A	70852698	3	1	312	1	0	0	0	0	1	0	0	0	3706	507	18	4	1698	4	COL19A1	6	70852698	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14383963	70852698	100262369	239	34618										
KCNQ5	0	genome.wustl.edu	37	chr6	73751697	73751697	+	Silent	SNP	C	C	T													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtctttggtttggagttcatCattcgaatctggtctgcggg							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	73751697	73751697	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	silent	c.528	p.I176	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	651	1	0.15	365	41	10.1	-	-	-	T	73751697	C	T	73751697	2	4	312	1	0	0	0	0	0	0	0	1	8140	816	29	2		2	KCNQ5	6	73751697	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2898999	73751697	97363370	240	34619	279	2								
KCNQ5	0	genome.wustl.edu	37	chr6	73751706	73751706	+	Silent	SNP	C	C	T													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggagttcatcattcgaatCtggtctgcgggttgctgttg							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	73751706	73751706	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	silent	c.537	p.I179	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	652	0	0	355	44	11	-	-	-	T	73751706	C	T	73751706	2	4	312	1	0	0	0	0	0	0	0	1	8140	903	32	2		2	KCNQ5	6	73751706	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9	73751706	97363361	241	34620	279	2								
COX7A2	0	genome.wustl.edu	37	chr6	75947696	75947696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agccagctcatatatggcatAtgctgttcctaaaaataaaa	6	8	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	75947696	75947696	A	G	SNP	COX7A2	ENST00000370081	human	ensembl	69_37n	-1	known	missense	c.298	p.Y100H	0.996	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a	-	no_errors	COX7A2	HGNC	ENSG00000112695	72	0	0	34	5	12.82	-	-	-	G	75947696	A	G	75947696	3	3	312	1	0	0	0	0	1	0	0	0	3810	449	16	5	53	5	COX7A2	6	75947696	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	2195990	75947696	95167371	242	34621										
MDN1	0	genome.wustl.edu	37	chr6	90368526	90368526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atcttcactggggccttcctCaggctcctgtggactctgac	10	14	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	90368526	90368526	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.14824	p.E4942Q	0.997	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	820	0	0	448	68	13.18	-	-	-	G	90368526	C	G	90368526	3	3	312	1	0	0	0	0	1	0	0	0	9486	835	29	2	2022	2	MDN1	6	90368526	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14420830	90368526	80746541	243	34622										
GJA10	0	genome.wustl.edu	37	chr6	90604554	90604554	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccagatggagaatccagatCttgacttggaggagcagcaa	12	9	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	90604554	90604554	C	T	SNP	GJA10	ENST00000369352	human	ensembl	69_37n	1	known	missense	c.367	p.L123F	0.352	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355	177	0	0	94	13	12.15	-	-	-	T	90604554	C	T	90604554	3	4	312	1	0	0	0	0	1	0	0	0	6453	913	32	2	369	2	GJA10	6	90604554	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	236028	90604554	80510513	244	34623										
KLHL32	0	genome.wustl.edu	37	chr6	97512544	97512544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatccaggatgtgctagcagCgggcagtcacctacagctgt	13	11	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	97512544	97512544	C	T	SNP	KLHL32	ENST00000369261	human	ensembl	69_37n	1	known	missense	c.353	p.A118V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231	213	0	0	104	27	20.61	-	-	-	T	97512544	C	T	97512544	3	4	312	1	0	0	0	0	1	0	0	0	8439	768	27	1	367	1	KLHL32	6	97512544	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6907990	97512544	73602523	245	34624										
USP45	0	genome.wustl.edu	37	chr6	99885230	99885230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catcgagccactatgttccaCtatgccatagagaccgtaga	8	12	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	99885230	99885230	C	G	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.2206	p.V736L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	307	0	0	177	24	11.94	-	-	-	G	99885230	C	G	99885230	3	3	312	1	0	0	0	0	1	0	0	0	17173	565	20	4	246	4	USP45	6	99885230	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2372686	99885230	71229837	246	34625										
MCHR2	0	genome.wustl.edu	37	chr6	100369053	100369053	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acatgataaggggcagcactCaggataaagactaccaccag	10	10	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	100369053	100369053	C	G	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	silent	c.786	p.L262	0.083	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	395	0	0	199	23	10.36	-	-	-	G	100369053	C	G	100369053	2	3	312	1	0	0	0	0	0	0	0	1	9454	813	29	2		2	MCHR2	6	100369053	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	483823	100369053	70746014	247	34626										
GRIK2	0	genome.wustl.edu	37	chr6	102124653	102124653	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taatctttgattgtagccatGaaatggcagcaggcatttta	9	6	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	102124653	102124653	G	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.697	p.E233Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	157	0	0	81	15	15.46	-	-	-	C	102124653	G	C	102124653	3	2	312	1	0	0	0	0	1	0	0	0	6825	1291	45	2	711	2	GRIK2	6	102124653	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1755600	102124653	68990414	248	34627										
SEC63	0	genome.wustl.edu	37	chr6	108225915	108225915	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaggacacttttttagcatGaattgctgatctgcaaaaca	8	8	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	108225915	108225915	G	C	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	missense	c.972	p.F324L	1.000	pfam_Sec63-dom,superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	208	0	0	106	18	14.52	-	-	-	C	108225915	G	C	108225915	3	2	312	1	0	0	0	0	1	0	0	0	14093	1281	45	2	1354	2	SEC63	6	108225915	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6101262	108225915	62889152	249	34628										
ARMC2	0	genome.wustl.edu	37	chr6	109258196	109258196	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctaattaacaaataccagaaGaagcaggtcagttcttcatt	6	8	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	109258196	109258196	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	silent	c.1590	p.K530	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	243	0	0	127	15	10.56	-	-	-	A	109258196	G	A	109258196	2	1	312	1	0	0	0	0	0	0	0	1	955	933	33	2		2	ARMC2	6	109258196	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1032281	109258196	61856871	250	34629										
ARMC2	0	genome.wustl.edu	37	chr6	109283314	109283314	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaccatgatgtctgcgatttCattgtgcagaacaatggtga	11	7	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	109283314	109283314	C	T	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	silent	c.2136	p.F712	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	194	0	0	90	11	10.89	-	-	-	T	109283314	C	T	109283314	2	4	312	1	0	0	0	0	0	0	0	1	955	825	29	2		2	ARMC2	6	109283314	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	25118	109283314	61831753	251	34630										
THEMIS	0	genome.wustl.edu	37	chr6	128150651	128150651	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accttgaatttcataaacagGcttgagaatcagggtaccat	8	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	128150651	128150651	G	C	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.679	p.P227A	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	283	0	0	148	18	10.78	-	-	-	C	128150651	G	C	128150651	3	2	312	1	0	0	0	0	1	0	0	0	15955	1203	42	4	1383	4	THEMIS	6	128150651	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	18867337	128150651	42964416	252	34631										
ARHGAP18	0	genome.wustl.edu	37	chr6	129959745	129959745	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagattggataaaccggcctCtttaagccactcttcttcca	7	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	129959745	129959745	C	T	SNP	ARHGAP18	ENST00000275189	human	ensembl	69_37n	-1	known	missense	c.346	p.E116K	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	169	0	0	102	15	12.82	-	-	-	T	129959745	C	T	129959745	3	4	312	1	0	0	0	0	1	0	0	0	870	922	32	2	1697	2	ARHGAP18	6	129959745	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1809094	129959745	41155322	253	34632										
UTRN	0	genome.wustl.edu	37	chr6	145119080	145119080	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagcggagactgcaaaacatCaggccaaatgcaacatctgt	9	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	145119080	145119080	C	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.9199	p.Q3067E	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_Znf_ZZ	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	184	0	0	118	16	11.94	-	-	-	G	145119080	C	G	145119080	3	3	312	1	0	0	0	0	1	0	0	0	17200	827	29	2	9449	2	UTRN	6	145119080	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	15159335	145119080	25995987	254	34633										
ESR1	0	genome.wustl.edu	37	chr6	152419880	152419880	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctacagtaacaaaggcatgGagcatctgtacagcatgaag	10	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	152419880	152419880	G	C	SNP	ESR1	ENST00000206249	human	ensembl	69_37n	1	known	missense	c.1567	p.E523Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Str_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	215	0	0	131	21	13.82	-	-	-	C	152419880	G	C	152419880	3	2	312	1	0	0	0	0	1	0	0	0	5293	1175	41	2	1597	2	ESR1	6	152419880	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7300800	152419880	18695187	255	34634										
TMEM181	0	genome.wustl.edu	37	chr6	159010742	159010742	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtggctcaccttggctacctGaactacactcagtatacagt	8	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	159010742	159010742	G	C	SNP	TMEM181	ENST00000367090	human	ensembl	69_37n	1	known	silent	c.831	p.L277	1.000	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433	307	0	0	209	31	12.92	-	-	-	C	159010742	G	C	159010742	2	2	312	1	0	0	0	0	0	0	0	1	16195	1277	45	2		2	TMEM181	6	159010742	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6590862	159010742	12104325	256	34635										
SFT2D1	0	genome.wustl.edu	37	chr6	166739592	166739592	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggggggcacacagttaactGaaagccagtagggctgacat	14	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	166739592	166739592	G	C	SNP	SFT2D1	ENST00000494682	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SFT2D1	HGNC	ENSG00000198818	111	0	0	95	11	10.38	-	-	-	C	166739592	G	C	166739592	1	2	312	0	1	0	0	0	0	0	0	0	14273	1305	45	2		2	SFT2D1	6	166739592	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7728850	166739592	4375475	257	34636										
FGFR1OP	0	genome.wustl.edu	37	chr6	167417805	167417805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgagatttaggtataattgaAgcagaaggtactgtgggtgg	15	3	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	6	167417805	167417805	A	G	SNP	FGFR1OP	ENST00000366847	human	ensembl	69_37n	1	known	silent	c.354	p.E118	1.000	pfam_FOP_dimerisation-dom_N	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	-	no_errors	FGFR1OP	HGNC	ENSG00000213066	193	0	0	102	69	39.88	-	-	-	G	167417805	A	G	167417805	2	3	312	1	0	0	0	0	0	0	0	1	5910	69	3	5		5	FGFR1OP	6	167417805	Silent	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	678213	167417805	3697262	258	34637										
PAPOLB	0	genome.wustl.edu	37	chr7	4901040	4901040	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtagtttcagtttagcataGaatgaggtgaaaaagtcgct	11	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	4901040	4901040	G	A	SNP	PAPOLB	ENST00000404991	human	ensembl	69_37n	-1	known	silent	c.399	p.F133	1.000	pfam_PolA_pol_cen_dom,pfam_Nucleotidyltransferase,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823	216	0	0	116	14	10.77	-	-	-	A	4901040	G	A	4901040	2	1	312	1	0	0	0	0	0	0	0	1	11503	933	33	2		2	PAPOLB	7	4901040	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		4901040	154237623	259	34638										
TNRC18	0	genome.wustl.edu	37	chr7	5363881	5363881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctccacagccccgccacgcgGcaggtgctcgtcctcagaga	11	18	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	5363881	5363881	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.6406	p.P2136S	0.990	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	93	0	0	71	18	20	-	-	-	A	5363881	G	A	5363881	3	1	312	1	0	0	0	0	1	0	0	0	16434	1203	42	4	2540	4	TNRC18	7	5363881	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	462841	5363881	153774782	260	34639										
SCIN	0	genome.wustl.edu	37	chr7	12668762	12668762	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaatggtaggatccaagttGaccaaaactcatatggtgaa	9	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	12668762	12668762	G	C	SNP	SCIN	ENST00000297029	human	ensembl	69_37n	1	known	missense	c.1234	p.D412H	0.997	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747	325	0	0	170	19	10.05	-	-	-	C	12668762	G	C	12668762	3	2	312	1	0	0	0	0	1	0	0	0	13993	1290	45	2	1268	2	SCIN	7	12668762	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7304881	12668762	146469901	261	34640										
NPVF	0	genome.wustl.edu	37	chr7	25266495	25266495	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccagcacttctttcttcttGaacgttcctcccaaatctca	3	15	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	25266495	25266495	G	C	SNP	NPVF	ENST00000222674	human	ensembl	69_37n	-1	known	missense	c.289	p.Q97E	0.020	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	448	0	0	257	34	11.68	-	-	-	C	25266495	G	C	25266495	3	2	312	1	0	0	0	0	1	0	0	0	10678	1299	45	2	309	2	NPVF	7	25266495	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12597733	25266495	133872168	262	34641										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26236568	26236568	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atctctaaggtgatgttcctCagtatcttctttaattccgc	6	10	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	26236568	26236568	C	G	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.370	p.E124Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	275	0	0	160	21	11.6	-	-	-	G	26236568	C	G	26236568	3	3	312	1	0	0	0	0	1	0	0	0	7310	835	29	2	719	2	HNRNPA2B1	7	26236568	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	970073	26236568	132902095	263	34642										
HOXA2	0	genome.wustl.edu	37	chr7	27140817	27140817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgtcctcctctactttctcgGagtcctcaaggcttttacat	6	14	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	27140817	27140817	G	A	SNP	HOXA2	ENST00000222718	human	ensembl	69_37n	-1	known	missense	c.659	p.S220F	0.991	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996	153	0	0	92	11	10.68	-	-	-	A	27140817	G	A	27140817	3	1	312	1	0	0	0	0	1	0	0	0	7343	1174	41	2	475	2	HOXA2	7	27140817	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	904249	27140817	131997846	264	34643										
GHRHR	0	genome.wustl.edu	37	chr7	31010784	31010784	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacaccgtgggccatagcatCtctattgtagccctcttcgt	8	13	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	31010784	31010784	C	G	SNP	GHRHR	ENST00000326139	human	ensembl	69_37n	1	known	missense	c.417	p.I139M	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128	434	0	0	280	32	10.22	-	-	-	G	31010784	C	G	31010784	3	3	312	1	0	0	0	0	1	0	0	0	6425	903	32	2	435	2	GHRHR	7	31010784	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3869967	31010784	128127879	265	34644										
NT5C3	0	genome.wustl.edu	37	chr7	33060930	33060930	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctacagtaagaacaggatCaacttcaatagcgtaatatt	6	7	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	33060930	33060930	C	G	SNP	NT5C3	ENST00000242210	human	ensembl	69_37n	-1	known	missense	c.409	p.D137H	1.000	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3	HGNC	ENSG00000122643	284	0	0	161	25	13.44	-	-	-	G	33060930	C	G	33060930	3	3	312	1	0	0	0	0	1	0	0	0	10761	826	29	2	621	2	NT5C3	7	33060930	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2050146	33060930	126077733	266	34645										
EEPD1	0	genome.wustl.edu	37	chr7	36194661	36194661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggcccacccagattatctCcactcggccgtccgtggagg	13	15	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	36194661	36194661	C	G	SNP	EEPD1	ENST00000242108	human	ensembl	69_37n	1	known	missense	c.728	p.S243C	1.000	NULL	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	55	0	0	30	20	40	-	-	-	G	36194661	C	G	36194661	3	3	312	1	0	0	0	0	1	0	0	0	4967	855	30	2	730	2	EEPD1	7	36194661	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3133731	36194661	122944002	267	34646										
ANLN	0	genome.wustl.edu	37	chr7	36447421	36447421	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacaaaatcctgagctacttCcaaaaactcctattagtcct	4	12	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	36447421	36447421	C	G	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	missense	c.952	p.P318A	0.005	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	175	0	0	90	10	10	-	-	-	G	36447421	C	G	36447421	3	3	312	1	0	0	0	0	1	0	0	0	693	855	30	2	970	2	ANLN	7	36447421	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	252760	36447421	122691242	268	34647										
EPDR1	0	genome.wustl.edu	37	chr7	37960252	37960252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcagtgagcagtgaaaaccGaagcggcagaaggcagtggc	16	8	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	37960252	37960252	G	T	SNP	EPDR1	ENST00000559325	human	ensembl	69_37n	1	known	missense	c.71	p.R24L	0.004	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	52	0	0	33	6	15.38	-	-	-	T	37960252	G	T	37960252	3	4	312	1	0	0	0	0	1	0	0	0	5200	1058	37	3	73	3	EPDR1	7	37960252	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1512831	37960252	121178411	269	34648										
AMPH	0	genome.wustl.edu	37	chr7	38475929	38475929	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaggtgtcacctcgggcttGaaaggatcaaagtccagatc	12	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	38475929	38475929	G	C	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	missense	c.1077	p.F359L	1.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	175	0	0	94	15	13.76	-	-	-	C	38475929	G	C	38475929	3	2	312	1	0	0	0	0	1	0	0	0	588	1281	45	2	1050	2	AMPH	7	38475929	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	515677	38475929	120662734	270	34649										
VPS41	0	genome.wustl.edu	37	chr7	38908751	38908751	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagtgctatcttaccttgtCatggactgtcatgcagctag	9	9	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	38908751	38908751	C	A	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.163	p.D55Y	1.000	superfamily_WD40_repeat_dom,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	154	0	0	95	13	12.04	-	-	-	A	38908751	C	A	38908751	3	1	312	1	0	0	0	0	1	0	0	0	17307	826	29	2	2509	2	VPS41	7	38908751	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	432822	38908751	120229912	271	34650										
C7orf10	0	genome.wustl.edu	37	chr7	40356401	40356401	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgcaaattatcttattggtCaaaaggaagcaaaacgttgg	9	6	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	40356401	40356401	C	G	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	1	known	missense	c.784	p.Q262E	0.074	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	168	0	0	106	14	11.57	-	-	-	G	40356401	C	G	40356401	3	3	312	1	0	0	0	0	1	0	0	0	2399	827	29	2	707	2	C7orf10	7	40356401	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1447650	40356401	118782262	272	34651										
ABCA13	0	genome.wustl.edu	37	chr7	48443387	48443387	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cattgctttcatgggcatgtCgaggaccgtggttctggatg	14	8	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	48443387	48443387	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.11981	p.S3994W	0.996	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	178	0	0	97	15	13.27	-	-	-	G	48443387	C	G	48443387	3	3	312	1	0	0	0	0	1	0	0	0	31	893	31	3	11964	3	ABCA13	7	48443387	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8086986	48443387	110695276	273	34652										
ZNF107	0	genome.wustl.edu	37	chr7	64166948	64166948	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaagtctttgataaattttCaaattcaaatagatataaga	5	3	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	64166948	64166948	C	G	SNP	ZNF107	ENST00000344930	human	ensembl	69_37n	1	known	nonsense	c.266	p.S89*	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247	124	0	0	50	7	12.28	-	-	-	G	64166948	C	G	64166948	4	3	312	1	0	0	0	0	0	1	0	0	17811	838	29	2	272	2	ZNF107	7	64166948	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	15723561	64166948	94971715	274	34653										
FKBP6	0	genome.wustl.edu	37	chr7	72755332	72755332	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctagttcgagcccagaagGagcaacccttcaatcatgac	8	12	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	72755332	72755332	G	C	SNP	FKBP6	ENST00000252037	human	ensembl	69_37n	1	known	missense	c.844	p.E282Q	0.039	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP6	HGNC	ENSG00000077800	231	0	0	174	25	12.56	-	-	-	C	72755332	G	C	72755332	3	2	312	1	0	0	0	0	1	0	0	0	5958	1175	41	2	916	2	FKBP6	7	72755332	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8588384	72755332	86383331	275	34654										
PCLO	0	genome.wustl.edu	37	chr7	82545052	82545052	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttcttgagaccggcgtgtctCagtggttcgaaggagacggt	15	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	82545052	82545052	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.12250	p.E4084K	0.999	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	197	0	0	41	25	37.88	-	-	-	T	82545052	C	T	82545052	3	4	312	1	0	0	0	0	1	0	0	0	11656	835	29	2	3271	2	PCLO	7	82545052	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9789720	82545052	76593611	276	34655										
ABCB1	0	genome.wustl.edu	37	chr7	87160672	87160672	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccagacaacattttcatttCaacaactcctgctattgcaa	3	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	87160672	87160672	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2623	p.E875K	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	258	0	0	87	35	28.69	-	-	-	T	87160672	C	T	87160672	3	4	312	1	0	0	0	0	1	0	0	0	40	835	29	2	1251	2	ABCB1	7	87160672	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4615620	87160672	71977991	277	34656										
PON2	0	genome.wustl.edu	37	chr7	95045539	95045539	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctgctgaatttggggaagGaagaagacactcaccacact	10	10	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	95045539	95045539	G	A	SNP	PON2	ENST00000469926	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PON2	HGNC	ENSG00000105854	252	0	0	114	19	14.29	-	-	-	A	95045539	G	A	95045539	1	1	312	0	1	0	0	0	0	0	0	0	12323	1189	41	2		2	PON2	7	95045539	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7884867	95045539	64093124	278	34657										
LAMB1	0	genome.wustl.edu	37	chr7	107576031	107576031	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acagtgctgttgggttctgtGgtggaggcattcaccctctc	13	10	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	107576031	107576031	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	silent	c.4017	p.T1339	0.682	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	310	0	0	276	32	10.39	-	-	-	A	107576031	G	A	107576031	2	1	312	1	0	0	0	0	0	0	0	1	8664	1335	47	4		4	LAMB1	7	107576031	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12530492	107576031	51562632	279	34658										
DNAJB9	0	genome.wustl.edu	37	chr7	108213604	108213604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcatcatttccaagaattttCttttggaggtggattatttg	9	5	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	108213604	108213604	C	G	SNP	DNAJB9	ENST00000249356	human	ensembl	69_37n	1	known	missense	c.479	p.S160C	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB9	HGNC	ENSG00000128590	401	0	0	289	39	11.89	-	-	-	G	108213604	C	G	108213604	3	3	312	1	0	0	0	0	1	0	0	0	4662	913	32	2	485	2	DNAJB9	7	108213604	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	637573	108213604	50925059	280	34659										
CCDC136	0	genome.wustl.edu	37	chr7	128451956	128451956	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagagcaagggaggctcctaGaggagcggaagaggctgcag	18	7	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	128451956	128451956	G	C	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.2131	p.E711Q	0.989	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	90	0	0	62	9	12.68	-	-	-	C	128451956	G	C	128451956	3	2	312	1	0	0	0	0	1	0	0	0	2795	943	33	2	2181	2	CCDC136	7	128451956	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	20238352	128451956	30686707	281	34660										
AHCYL2	0	genome.wustl.edu	37	chr7	129029010	129029010	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acatcaaacaggcagagtttGgacgaagagaaattgaaatt	10	5	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	129029010	129029010	G	C	SNP	AHCYL2	ENST00000325006	human	ensembl	69_37n	1	known	missense	c.589	p.G197R	1.000	pfam_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467	139	0	0	94	17	15.32	-	-	-	C	129029010	G	C	129029010	3	2	312	1	0	0	0	0	1	0	0	0	411	1349	47	4	721	4	AHCYL2	7	129029010	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	577054	129029010	30109653	282	34661										
COPG2	0	genome.wustl.edu	37	chr7	130146586	130146586	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgacagtcacctgcatggtCactccatcggctaaggccag	10	14	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	130146586	130146586	C	G	SNP	COPG2	ENST00000425248	human	ensembl	69_37n	-1	known	nonstop	c.398	p.*133S	0.995	pfam_Coatomer_gsu_app,superfamily_Coatomer/calthrin_app_sub_C	pfam_Coatomer_gsu_app,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COPG2	HGNC	ENSG00000158623	197	0	0	125	27	17.76	-	-	-	G	130146586	C	G	130146586	4	3	312	1	0	0	0	0	0	0	0	0	3762	813	29	2	72	2	COPG2	7	130146586	Nonstop_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1117576	130146586	28992077	283	34662										
EXOC4	0	genome.wustl.edu	37	chr7	133622768	133622768	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccaacatgcatgaaagcctgGaatggttggcaagtcgaaca	11	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	133622768	133622768	G	C	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.2152	p.E718Q	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	226	0	0	129	26	16.77	-	-	-	C	133622768	G	C	133622768	3	2	312	1	0	0	0	0	1	0	0	0	5342	1175	41	2	2215	2	EXOC4	7	133622768	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3476182	133622768	25515895	284	34663										
EXOC4	0	genome.wustl.edu	37	chr7	133682259	133682259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttcagtgctttctcctgctCaagacagccacacgaacacg	7	14	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	133682259	133682259	C	G	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.2221	p.Q741E	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	105	0	0	63	8	11.27	-	-	-	G	133682259	C	G	133682259	3	3	312	1	0	0	0	0	1	0	0	0	5342	827	29	2	2288	2	EXOC4	7	133682259	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	59491	133682259	25456404	285	34664										
MGAM	0	genome.wustl.edu	37	chr7	141784373	141784373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctttggggttccagctgtgtCgctatggctaccagaacgac	12	11	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	141784373	141784373	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.6439	p.R2147C	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	159	0	0	185	26	12.32	-	-	-	T	141784373	C	T	141784373	3	4	312	1	0	0	0	0	1	0	0	0	9612	899	31	1		1	MGAM	7	141784373	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8102114	141784373	17354290	286	34665										
EPHB6	0	genome.wustl.edu	37	chr7	142563760	142563760	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggtttgaggtgcaaggctCagcactcatgctacactggc	12	10	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	142563760	142563760	C	T	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	missense	c.1148	p.S383L	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	44	0	0	39	5	11.36	-	-	-	T	142563760	C	T	142563760	3	4	312	1	0	0	0	0	1	0	0	0	5215	838	29	2	1166	2	EPHB6	7	142563760	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	779387	142563760	16574903	287	34666										
EPHB6	0	genome.wustl.edu	37	chr7	142568301	142568301	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggccttcccaggcccttctGacccctgtggccctggactt	10	17	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	142568301	142568301	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	silent	c.2820	p.L940	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	105	0	0	88	12	12	-	-	-	A	142568301	G	A	142568301	2	1	312	1	0	0	0	0	0	0	0	1	5215	1277	45	2		2	EPHB6	7	142568301	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4541	142568301	16570362	288	34667										
KCNH2	0	genome.wustl.edu	37	chr7	150654493	150654493	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccttgaggtccacaaagttGagggtgatttggggaatctt	13	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	150654493	150654493	G	A	SNP	KCNH2	ENST00000262186	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	238	0	0	216	34	13.6	-	-	-	A	150654493	G	A	150654493	2	1	312	1	0	0	0	0	0	0	0	1	8086	1277	45	2		2	KCNH2	7	150654493	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8086192	150654493	8484170	289	34668										
ATG9B	0	genome.wustl.edu	37	chr7	150714279	150714279	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagagtggatgcgccagggaGaaccgcatcaaagaaagctc	13	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	7	150714279	150714279	G	T	SNP	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	25	0	0	23	6	20.69	-	-	-	T	150714279	G	T	150714279	1	4	312	0	1	0	0	0	0	0	0	0	1107	933	33	2		2	ATG9B	7	150714279	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	59786	150714279	8424384	290	34669										
MYOM2	0	genome.wustl.edu	37	chr8	2071151	2071151	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacaccaagaaagaaaccgtTttcaaatggctcaaggatga	8	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	2071151	2071151	T	A	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	silent	c.3480	p.V1160	0.473	smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	148	0	0	96	11	10.28	-	-	-	A	2071151	T	A	2071151	2	1	312	1	0	0	0	0	0	0	0	1	10164	1828	64	5		5	MYOM2	8	2071151	Silent	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09		2071151	144292871	291	34670										
CSMD1	0	genome.wustl.edu	37	chr8	3253803	3253803	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttcccggtgctgatgaggaActggggtgcctgggtgccgt	18	9	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	3253803	3253803	A	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.2509	p.F837I	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	199	0	0	86	24	21.62	-	-	-	T	3253803	A	T	3253803	3	4	312	1	0	0	0	0	1	0	0	0	3976	43	2	5	8404	5	CSMD1	8	3253803	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	1182652	3253803	143110219	292	34671										
PCM1	0	genome.wustl.edu	37	chr8	17808216	17808216	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taattcagcgttttcataatCagcttcgtgattctcaggta	7	8	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	17808216	17808216	C	G	SNP	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	missense	c.1054	p.Q352E	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	192	0	0	121	18	12.95	-	-	-	G	17808216	C	G	17808216	3	3	312	1	0	0	0	0	1	0	0	0	11657	827	29	2	1076	2	PCM1	8	17808216	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14554413	17808216	128555806	293	34672										
PSD3	0	genome.wustl.edu	37	chr8	18729541	18729541	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacatccccctgggtgctctCtcccaagagcagacctctgc	8	18	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	18729541	18729541	C	G	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	missense	c.833	p.R278T	0.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	75	0	0	36	4	10	-	-	-	G	18729541	C	G	18729541	3	3	312	1	0	0	0	0	1	0	0	0	12728	913	32	2	2402	2	PSD3	8	18729541	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	921325	18729541	127634481	294	34673										
C8orf58	0	genome.wustl.edu	37	chr8	22458455	22458455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggagtcaccagcacctacaGacggatccccgacgctgccc	10	17	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	22458455	22458455	G	A	SNP	C8orf58	ENST00000289989	human	ensembl	69_37n	1	known	missense	c.101	p.R34K	0.731	NULL	NULL	-	no_errors	C8orf58	HGNC	ENSG00000241852	30	0	0	25	7	21.88	-	-	-	A	22458455	G	A	22458455	3	1	312	1	0	0	0	0	1	0	0	0	2458	942	33	2	107	2	C8orf58	8	22458455	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3728914	22458455	123905567	295	34674										
ADAM7	0	genome.wustl.edu	37	chr8	24323268	24323268	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatgattcagctgccagtatCagtacgtgtaatggtctaag	10	7	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	24323268	24323268	C	A	SNP	ADAM7	ENST00000175238	human	ensembl	69_37n	1	known	silent	c.369	p.I123	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	258	0	0	142	23	13.94	-	-	-	A	24323268	C	A	24323268	2	1	312	1	0	0	0	0	0	0	0	1	251	816	29	2		2	ADAM7	8	24323268	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1864813	24323268	122040754	296	34675										
KIF13B	0	genome.wustl.edu	37	chr8	28991565	28991565	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaacaaactcacattgcaatGatcaaagacaaccatgcagt	5	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	28991565	28991565	G	C	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.2776	p.H926D	0.998	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	94	0	0	49	9	15.52	-	-	-	C	28991565	G	C	28991565	3	2	312	1	0	0	0	0	1	0	0	0	8327	1290	45	2	2780	2	KIF13B	8	28991565	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4668297	28991565	117372457	297	34676										
TEX15	0	genome.wustl.edu	37	chr8	30705231	30705231	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atagtctctctgaatgttctCtaatgacactggttcatttt	6	8	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	30705231	30705231	C	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1303	p.E435K	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	353	0	0	186	29	13.49	-	-	-	T	30705231	C	T	30705231	3	4	312	1	0	0	0	0	1	0	0	0	15874	922	32	2	7082	2	TEX15	8	30705231	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1713666	30705231	115658791	298	34677										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37732380	37732380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgctctctggcttcttgctCtccttagcttcttttgtggc	8	13	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	37732380	37732380	C	G	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.1275	p.E425D	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	71	0	0	48	10	17.24	-	-	-	G	37732380	C	G	37732380	3	3	312	1	0	0	0	0	1	0	0	0	12976	912	32	2	2592	2	RAB11FIP1	8	37732380	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7027149	37732380	108631642	299	34678										
ASH2L	0	genome.wustl.edu	37	chr8	37996376	37996376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcttcaagtatcctccgaagGatctcacttaccgccctgtg	8	14	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	37996376	37996376	G	A	SNP	ASH2L	ENST00000343823	human	ensembl	69_37n	1	known	missense	c.1762	p.D588N	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691	303	0	0	221	26	10.53	-	-	-	A	37996376	G	A	37996376	3	1	312	1	0	0	0	0	1	0	0	0	1046	1174	41	2	1820	2	ASH2L	8	37996376	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	263996	37996376	108367646	300	34679										
HGSNAT	0	genome.wustl.edu	37	chr8	43054540	43054540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctccttaaggaatgaattCcattctggtatatgtcggcc	8	10	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	43054540	43054540	C	G	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1820	p.S607C	0.999	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	97	0	0	70	9	11.39	-	-	-	G	43054540	C	G	43054540	3	3	312	1	0	0	0	0	1	0	0	0	7139	855	30	2	1806	2	HGSNAT	8	43054540	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5058164	43054540	103309482	301	34680										
PLAG1	0	genome.wustl.edu	37	chr8	57079234	57079234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtaactccatcaggtaactCtcaatttccccctttaatgg	5	12	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	57079234	57079234	C	G	SNP	PLAG1	ENST00000316981	human	ensembl	69_37n	-1	known	missense	c.1071	p.E357D	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690	170	0	0	84	14	14.29	-	-	-	G	57079234	C	G	57079234	3	3	312	1	0	0	0	0	1	0	0	0	12092	912	32	2	435	2	PLAG1	8	57079234	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14024694	57079234	89284788	302	34681										
ZNF704	0	genome.wustl.edu	37	chr8	81553616	81553616	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtctctcagtcgaggaacctCtggcaggccttcttccagcg	11	14	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	81553616	81553616	C	G	SNP	ZNF704	ENST00000327835	human	ensembl	69_37n	-1	known	missense	c.1224	p.Q408H	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	108	0	0	43	12	21.82	-	-	-	G	81553616	C	G	81553616	3	3	312	1	0	0	0	0	1	0	0	0	18203	912	32	2	18	2	ZNF704	8	81553616	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	24474382	81553616	64810406	303	34682										
CA1	0	genome.wustl.edu	37	chr8	86242044	86242044	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaggaaggagagtagagggGtcaaaatttgtgaatggggc	18	2	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	86242044	86242044	G	C	SNP	CA1	ENST00000256119	human	ensembl	69_37n	-1	known	missense	c.543	p.D181E	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA1	HGNC	ENSG00000133742	276	0	0	128	16	11.11	-	-	-	C	86242044	G	C	86242044	3	2	312	1	0	0	0	0	1	0	0	0	2535	1252	44	4	250	4	CA1	8	86242044	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4688428	86242044	60121978	304	34683										
TMEM55A	0	genome.wustl.edu	37	chr8	92008895	92008895	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cactcacagttaacccaactCcaatgaaaatacatatcatt	2	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	92008895	92008895	C	G	SNP	TMEM55A	ENST00000285419	human	ensembl	69_37n	-1	known	missense	c.617	p.G206A	0.999	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55A	HGNC	ENSG00000155099	185	0	0	97	12	11.01	-	-	-	G	92008895	C	G	92008895	3	3	312	1	0	0	0	0	1	0	0	0	16276	855	30	2	164	2	TMEM55A	8	92008895	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5766851	92008895	54355127	305	34684										
KIAA1429	0	genome.wustl.edu	37	chr8	95518781	95518781	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaagaaacatcattgttctGacacatgtcagtaaacagtt	7	8	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	95518781	95518781	G	A	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	silent	c.4044	p.V1348	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	103	0	0	77	10	11.49	-	-	-	A	95518781	G	A	95518781	2	1	312	1	0	0	0	0	0	0	0	1	8283	1277	45	2		2	KIAA1429	8	95518781	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3509886	95518781	50845241	306	34685										
VPS13B	0	genome.wustl.edu	37	chr8	100123447	100123447	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttattatacaaatgttccttCagaactcgtcttcattttac	3	9	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	100123447	100123447	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.702	p.F234	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	220	0	0	175	20	10.26	-	-	-	T	100123447	C	T	100123447	2	4	312	1	0	0	0	0	0	0	0	1	17287	825	29	2		2	VPS13B	8	100123447	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4604666	100123447	46240575	307	34686										
UBR5	0	genome.wustl.edu	37	chr8	103284937	103284937	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggtgtagtagcacatcttcGaccaaagtgattgttaagct	10	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	103284937	103284937	G	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	nonsense	c.6793	p.R2265*	0.993	superfamily_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	130	0	0	87	10	10.31	-	-	-	A	103284937	G	A	103284937	4	1	312	1	0	0	0	0	0	1	0	0	17002	1066	37	1	1654	1	UBR5	8	103284937	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3161490	103284937	43079085	308	34687										
EBAG9	0	genome.wustl.edu	37	chr8	110563122	110563122	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acagtattctcattcctaaaGagattaatatgcaggtaaat	6	6	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	110563122	110563122	G	A	SNP	EBAG9	ENST00000337573	human	ensembl	69_37n	1	known	silent	c.69	p.K23	1.000	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654	303	0	0	214	29	11.93	-	-	-	A	110563122	G	A	110563122	2	1	312	1	0	0	0	0	0	0	0	1	4914	933	33	2		2	EBAG9	8	110563122	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7278185	110563122	35800900	309	34688										
CSMD3	0	genome.wustl.edu	37	chr8	113363470	113363470	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catacatgtaatgtgagagtGaccctacataaacaaaatga	7	7	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	113363470	113363470	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.6259	p.H2087Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	239	0	0	157	19	10.8	-	-	-	A	113363470	G	A	113363470	3	1	312	1	0	0	0	0	1	0	0	0	3978	1290	45	2	4992	2	CSMD3	8	113363470	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2800348	113363470	33000552	310	34689										
TRPS1	0	genome.wustl.edu	37	chr8	116616177	116616177	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagtgttctttgctttccttGacagactgctgcccatccga	9	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	116616177	116616177	G	C	SNP	TRPS1	ENST00000517323	human	ensembl	69_37n	-1	known	nonsense	c.1382	p.S461*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPS1	HGNC	ENSG00000104447	311	0	0	226	55	19.57	-	-	-	C	116616177	G	C	116616177	4	2	312	1	0	0	0	0	0	1	0	0	16689	1277	45	2	1881	2	TRPS1	8	116616177	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3252707	116616177	29747845	311	34690										
TRPS1	0	genome.wustl.edu	37	chr8	116631536	116631536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcttgcctggtgcggttatgCagtcctaagtgatactttcg	11	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	116631536	116631536	C	T	SNP	TRPS1	ENST00000517323	human	ensembl	69_37n	-1	known	missense	c.752	p.C251Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPS1	HGNC	ENSG00000104447	156	0	0	123	31	20.13	-	-	-	T	116631536	C	T	116631536	3	4	312	1	0	0	0	0	1	0	0	0	16689	697	25	4	3115	4	TRPS1	8	116631536	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	15359	116631536	29732486	312	34691										
EXT1	0	genome.wustl.edu	37	chr8	118811984	118811984	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgtctcggtatttcttcctCaaaatagagacctggtcttt	7	9	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	118811984	118811984	C	T	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	silent	c.2208	p.L736	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	134	0	0	121	26	17.69	-	-	-	T	118811984	C	T	118811984	2	4	312	1	0	0	0	0	0	0	0	1	5360	825	29	2		2	EXT1	8	118811984	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2180448	118811984	27552038	313	34692										
WDR67	0	genome.wustl.edu	37	chr8	124138797	124138797	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttctcagaagtgctgacaaGagaggagtggctgaaattgt	14	5	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	124138797	124138797	G	C	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.1754	p.R585T	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	269	0	0	176	27	13.3	-	-	-	C	124138797	G	C	124138797	3	2	312	1	0	0	0	0	1	0	0	0	17415	942	33	2	1804	2	WDR67	8	124138797	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5326813	124138797	22225225	314	34693										
FAM83A	0	genome.wustl.edu	37	chr8	124195425	124195425	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacctacttccctgtggcctCagagggcagcgagccggccc	12	17	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	124195425	124195425	C	T	SNP	FAM83A	ENST00000318462	human	ensembl	69_37n	1	known	missense	c.329	p.S110L	0.943	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689	18	0	0	13	4	23.53	-	-	-	T	124195425	C	T	124195425	3	4	312	1	0	0	0	0	1	0	0	0	5678	838	29	2	331	2	FAM83A	8	124195425	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	56628	124195425	22168597	315	34694										
PHF20L1	0	genome.wustl.edu	37	chr8	133837548	133837548	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taaggaaagaagagagaagaGagacaaagatcactacagac	11	5	1	7			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	133837548	133837548	G	C	SNP	PHF20L1	ENST00000395386	human	ensembl	69_37n	1	putative	missense	c.1676	p.R559T	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	37	0	0	24	5	17.24	-	-	-	C	133837548	G	C	133837548	3	2	312	1	0	0	0	0	1	0	0	0	11906	942	33	2	1822	2	PHF20L1	8	133837548	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9642123	133837548	12526474	316	34695										
NDRG1	0	genome.wustl.edu	37	chr8	134271459	134271459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttcagccagctgatccatgGaggggtacatgtacctgggg	14	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	134271459	134271459	G	T	SNP	NDRG1	ENST00000323851	human	ensembl	69_37n	-1	known	missense	c.341	p.S114Y	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	69	0	0	60	10	14.29	-	-	-	T	134271459	G	T	134271459	3	4	312	1	0	0	0	0	1	0	0	0	10323	1174	41	2	887	2	NDRG1	8	134271459	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	433911	134271459	12092563	317	34696										
KHDRBS3	0	genome.wustl.edu	37	chr8	136470169	136470169	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gactccctggacccctccttCacgcacgccctgcgcctggt	9	20	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	136470169	136470169	C	T	SNP	KHDRBS3	ENST00000355849	human	ensembl	69_37n	1	known	silent	c.60	p.F20	1.000	NULL	smart_KH_dom	-	no_errors	KHDRBS3	HGNC	ENSG00000131773	13	0	0	12	4	25	-	-	-	T	136470169	C	T	136470169	2	4	312	1	0	0	0	0	0	0	0	1	8200	825	29	2		2	KHDRBS3	8	136470169	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2198710	136470169	9893853	318	34697										
JRK	0	genome.wustl.edu	37	chr8	143747381	143747381	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttccggctctcgcccttctCcaggcgcgtgcagatgtcaa	10	16	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	143747381	143747381	C	G	SNP	JRK	ENST00000422119	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	55	0	0	40	5	11.11	-	-	-	G	143747381	C	G	143747381	1	3	312	0	1	0	0	0	0	0	0	0	8018	864	30	2		2	JRK	8	143747381	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7277212	143747381	2616641	319	34698										
CYP11B1	0	genome.wustl.edu	37	chr8	143958176	143958176	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccagcgagacaggctcctggGcatgaacatgagctggacgg	15	11	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	143958176	143958176	G	A	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	missense	c.721	p.P241S	0.972	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	106	0	0	91	11	10.68	-	-	-	A	143958176	G	A	143958176	3	1	312	1	0	0	0	0	1	0	0	0	4176	1203	42	4	814	4	CYP11B1	8	143958176	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	210795	143958176	2405846	320	34699										
CYC1	0	genome.wustl.edu	37	chr8	145151386	145151386	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccccctgacctcagctacatCgtgcgagctaggtacacggg	11	15	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	145151386	145151386	C	T	SNP	CYC1	ENST00000318911	human	ensembl	69_37n	1	known	silent	c.600	p.I200	1.000	pfam_Cyt_c1,superfamily_Cyt_c_dom,prints_Cyt_c1	pfam_Cyt_c1,superfamily_Cyt_c_dom,superfamily_Cyt_c1_TM_anchor_C,prints_Cyt_c1	-	no_errors	CYC1	HGNC	ENSG00000179091	195	0	0	135	21	13.46	-	-	-	T	145151386	C	T	145151386	2	4	312	1	0	0	0	0	0	0	0	1	4166	874	31	1		1	CYC1	8	145151386	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1193210	145151386	1212636	321	34700										
ZNF16	0	genome.wustl.edu	37	chr8	146156836	146156836	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccgatgctgaataaggctgGagctctgactaaatgctttc	10	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	8	146156836	146156836	G	C	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.1337	p.S446C	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	217	0	0	138	18	11.54	-	-	-	C	146156836	G	C	146156836	3	2	312	1	0	0	0	0	1	0	0	0	17834	1174	41	2	715	2	ZNF16	8	146156836	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1005450	146156836	207186	322	34701										
AK3	0	genome.wustl.edu	37	chr9	4718472	4718472	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcataagcctttagtctcttGataaccgtctctggtttatc	6	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	4718472	4718472	G	C	SNP	AK3	ENST00000381809	human	ensembl	69_37n	-1	known	missense	c.510	p.I170M	0.955	pfam_Adenylate_kin,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853	309	0	0	218	31	12.45	-	-	-	C	4718472	G	C	4718472	3	2	312	1	0	0	0	0	1	0	0	0	441	1280	45	2	181	2	AK3	9	4718472	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		4718472	136494959	323	34702										
DENND4C	0	genome.wustl.edu	37	chr9	19346788	19346788	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caccagcacaggaaaatcctGaaagtgaaaagagctcacct	8	11	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	19346788	19346788	G	A	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.3166	p.E1056K	0.103	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	92	0	0	61	8	11.59	-	-	-	A	19346788	G	A	19346788	3	1	312	1	0	0	0	0	1	0	0	0	4471	1291	45	2	3236	2	DENND4C	9	19346788	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	14628316	19346788	121866643	324	34703										
LINGO2	0	genome.wustl.edu	37	chr9	27948932	27948932	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttttttctgggcacatactCaaggtcaatgctgtttttgt	9	7	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	27948932	27948932	C	G	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.1738	p.E580Q	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	249	0	0	104	30	22.39	-	-	-	G	27948932	C	G	27948932	3	3	312	1	0	0	0	0	1	0	0	0	8871	835	29	2	86	2	LINGO2	9	27948932	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8602144	27948932	113264499	325	34704										
UBAP1	0	genome.wustl.edu	37	chr9	34241549	34241549	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggagttaaaaactattgatGagaaggaagagctgagaaat	12	2	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	34241549	34241549	G	A	SNP	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	missense	c.718	p.E240K	1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	229	0	0	140	20	12.5	-	-	-	A	34241549	G	A	34241549	3	1	312	1	0	0	0	0	1	0	0	0	16933	1291	45	2	773	2	UBAP1	9	34241549	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6292617	34241549	106971882	326	34705										
CNTNAP3	0	genome.wustl.edu	37	chr9	39103750	39103750	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcgagcttaccacgcagctCaatcctgatgaaatctgtga	10	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	39103750	39103750	C	G	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.2527	p.E843Q	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	136	0	0	91	14	13.33	-	-	-	G	39103750	C	G	39103750	3	3	312	1	0	0	0	0	1	0	0	0	3678	835	29	2	1375	2	CNTNAP3	9	39103750	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4862201	39103750	102109681	327	34706										
PCSK5	0	genome.wustl.edu	37	chr9	78790033	78790033	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccacagacgactatggcacaGaggattatgcaggtgagctg	13	9	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	78790033	78790033	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.1888	p.E630Q	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	136	0	0	65	14	17.5	-	-	-	C	78790033	G	C	78790033	3	2	312	1	0	0	0	0	1	0	0	0	11676	943	33	2	1942	2	PCSK5	9	78790033	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	39686283	78790033	62423398	328	34707										
RFK	0	genome.wustl.edu	37	chr9	79002433	79002433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caatatcaccttgaattgctGaaataagtgactctgcagag	8	8	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	79002433	79002433	G	A	SNP	RFK	ENST00000376736	human	ensembl	69_37n	-1	known	missense	c.350	p.S117L	1.000	pfam_Riboflavin_kinase_bac/euk,superfamily_Riboflavin_kinase_bac/euk,smart_Riboflavin_kinase_bac/euk	pfam_Riboflavin_kinase_bac/euk,superfamily_Riboflavin_kinase_bac/euk,smart_Riboflavin_kinase_bac/euk	-	no_errors	RFK	HGNC	ENSG00000135002	225	0	0	131	19	12.67	-	-	-	A	79002433	G	A	79002433	3	1	312	1	0	0	0	0	1	0	0	0	13334	1294	45	2	121	2	RFK	9	79002433	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	212400	79002433	62210998	329	34708										
PRUNE2	0	genome.wustl.edu	37	chr9	79324570	79324570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccaggtgcaaagatgtgatCcctggagtcattgtttttct	10	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	79324570	79324570	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1543	p.D515N	0.009	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	263	0	0	143	20	12.2	-	-	-	T	79324570	C	T	79324570	3	4	312	1	0	0	0	0	1	0	0	0	12721	855	30	2	6694	2	PRUNE2	9	79324570	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	322137	79324570	61888861	330	34709										
AGTPBP1	0	genome.wustl.edu	37	chr9	88162079	88162079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagtacttcttcttgagcaGaaggttcataatctcctaca	6	9	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	88162079	88162079	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.3662	p.S1221F	1.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	358	0	0	145	38	20.77	-	-	-	A	88162079	G	A	88162079	3	1	312	1	0	0	0	0	1	0	0	0	400	942	33	2	58	2	AGTPBP1	9	88162079	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8837509	88162079	53051352	331	34710										
CTSL1	0	genome.wustl.edu	37	chr9	90345976	90345976	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagatggccaaagaccggaGaaaccattgtggaattgcct	11	8	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	90345976	90345976	G	A	SNP	CTSL1	ENST00000340342	human	ensembl	69_37n	1	known	missense	c.956	p.R319K	0.015	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL1	HGNC	ENSG00000135047	193	0	0	127	21	14.19	-	-	-	A	90345976	G	A	90345976	3	1	312	1	0	0	0	0	1	0	0	0	4070	942	33	2	982	2	CTSL1	9	90345976	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2183897	90345976	50867455	332	34711										
ROR2	0	genome.wustl.edu	37	chr9	94486102	94486102	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgtgtgtcatcagcgccctCtgagagcagggctgccctgt	13	13	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	94486102	94486102	C	G	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	missense	c.2674	p.E892Q	0.814	pirsf_Tyr_kinase_rcpt_ROR	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	158	0	0	97	13	11.82	-	-	-	G	94486102	C	G	94486102	3	3	312	1	0	0	0	0	1	0	0	0	13613	922	32	2	161	2	ROR2	9	94486102	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4140126	94486102	46727329	333	34712										
SPTLC1	0	genome.wustl.edu	37	chr9	94871025	94871025	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tagcaaaatcaatttaccctGaaacgatgttgtagttgaga	8	6	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	94871025	94871025	G	A	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	missense	c.257	p.S86L	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	106	0	0	69	13	15.85	-	-	-	A	94871025	G	A	94871025	3	1	312	1	0	0	0	0	1	0	0	0	15214	1294	45	2	1225	2	SPTLC1	9	94871025	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	384923	94871025	46342406	334	34713										
IARS	0	genome.wustl.edu	37	chr9	95050514	95050514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtacccgcaagtatatgtCcatagtgaggcagtccagtt	10	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	95050514	95050514	C	T	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.170	p.G57E	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	178	0	0	86	16	15.69	-	-	-	T	95050514	C	T	95050514	3	4	312	1	0	0	0	0	1	0	0	0	7527	855	30	2	3746	2	IARS	9	95050514	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	179489	95050514	46162917	335	34714										
BAAT	0	genome.wustl.edu	37	chr9	104133443	104133443	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taatagcttttcaggtttcaGagaccagaagagacccatgg	10	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	104133443	104133443	G	A	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	silent	c.244	p.L82	0.795	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	123	0	0	62	16	20.51	-	-	-	A	104133443	G	A	104133443	2	1	312	1	0	0	0	0	0	0	0	1	1284	933	33	2		2	BAAT	9	104133443	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9082929	104133443	37079988	336	34715										
SMC2	0	genome.wustl.edu	37	chr9	106877035	106877035	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtggcttctctgattagtgtGaaagacacttctgcaaccac	9	10	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	106877035	106877035	G	C	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	silent	c.1596	p.V532	0.997	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	329	0	0	167	42	20.1	-	-	-	C	106877035	G	C	106877035	2	2	312	1	0	0	0	0	0	0	0	1	14872	1277	45	2		2	SMC2	9	106877035	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2743592	106877035	34336396	337	34716										
OR13C4	0	genome.wustl.edu	37	chr9	107289308	107289308	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagagaggttgcccaggaaGaagtacatgggcatgtgaag	15	5	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	107289308	107289308	G	A	SNP	OR13C4	ENST00000277216	human	ensembl	69_37n	-1	known	silent	c.183	p.F61	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C4	HGNC	ENSG00000148136	230	0	0	154	22	12.5	-	-	-	A	107289308	G	A	107289308	2	1	312	1	0	0	0	0	0	0	0	1	11009	933	33	2		2	OR13C4	9	107289308	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	412273	107289308	33924123	338	34717										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112899931	112899931	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccttgacccaagaggagcttGactctggtctggacgaattg	12	10	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	112899931	112899931	G	C	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.2107	p.D703H	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	96	0	0	48	8	14.04	-	-	-	C	112899931	G	C	112899931	3	2	312	1	0	0	0	0	1	0	0	0	11483	1290	45	2	2137	2	PALM2-AKAP2	9	112899931	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5610623	112899931	28313500	339	34718										
MUSK	0	genome.wustl.edu	37	chr9	113547901	113547901	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accagaggatgccgctccttCtgaaccccaaattgctcagc	8	15	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	113547901	113547901	C	T	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	silent	c.1699	p.L567	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	296	0	0	178	25	12.32	-	-	-	T	113547901	C	T	113547901	2	4	312	1	0	0	0	0	0	0	0	1	10061	912	32	2		2	MUSK	9	113547901	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	647970	113547901	27665530	340	34719										
WDR31	0	genome.wustl.edu	37	chr9	116094210	116094210	+	Silent	SNP	G	G	C													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatttataagtgctgtgtttGagtttgctttgctgtttccc							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	116094210	116094210	G	C	SNP	WDR31	ENST00000374193	human	ensembl	69_37n	-1	known	silent	c.93	p.L31	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR31	HGNC	ENSG00000148225	243	0	0	157	19	10.8	-	-	-	C	116094210	G	C	116094210	2	2	312	1	0	0	0	0	0	0	0	1	17383	1277	45	2		2	WDR31	9	116094210	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2546309	116094210	25119221	341	34720	280	2								
WDR31	0	genome.wustl.edu	37	chr9	116094211	116094211	+	Missense_Mutation	SNP	A	A	G													0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atttataagtgctgtgtttgAgtttgctttgctgtttcccc							TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	116094211	116094211	A	G	SNP	WDR31	ENST00000374193	human	ensembl	69_37n	-1	known	missense	c.92	p.L31P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR31	HGNC	ENSG00000148225	246	0	0	157	19	10.73	-	-	-	G	116094211	A	G	116094211	3	3	312	1	0	0	0	0	1	0	0	0	17383	304	11	5	1047	5	WDR31	9	116094211	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	1	116094211	25119220	342	34721	280	2								
POLE3	0	genome.wustl.edu	37	chr9	116171214	116171214	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtttttttgtctttgtccttCttcttttgctctgaggcctc	7	10	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	116171214	116171214	C	T	SNP	POLE3	ENST00000374169	human	ensembl	69_37n	-1	known	silent	c.321	p.K107	1.000	superfamily_Histone-fold	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	-	no_errors	POLE3	HGNC	ENSG00000148229	975	0	0	571	85	12.94	-	-	-	T	116171214	C	T	116171214	2	4	312	1	0	0	0	0	0	0	0	1	12272	912	32	2		2	POLE3	9	116171214	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	77003	116171214	25042217	343	34722										
POLE3	0	genome.wustl.edu	37	chr9	116172141	116172141	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtgacagggataagtccttCccttctctgcacaaaaaagc	8	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	116172141	116172141	C	T	SNP	POLE3	ENST00000479871	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	POLE3	HGNC	ENSG00000148229	42	0	0	20	3	13.04	-	-	-	T	116172141	C	T	116172141	1	4	312	0	1	0	0	0	0	0	0	0	12272	870	30	2		2	POLE3	9	116172141	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	927	116172141	25041290	344	34723										
ASTN2	0	genome.wustl.edu	37	chr9	119626003	119626003	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcaaagtatgtggacagcatCgcttcttcccttggagagaa	10	9	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	119626003	119626003	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	silent	c.1899	p.A633	0.306	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	143	0	0	73	27	27	-	-	-	T	119626003	C	T	119626003	2	4	312	1	0	0	0	0	0	0	0	1	1069	871	31	1		1	ASTN2	9	119626003	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3453862	119626003	21587428	345	34724										
PHF19	0	genome.wustl.edu	37	chr9	123620360	123620360	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tagttggtgatagatgacttGaggtgggacagggatgagtc	17	3	0	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	123620360	123620360	G	C	SNP	PHF19	ENST00000373896	human	ensembl	69_37n	-1	known	silent	c.1605	p.L535	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	167	0	0	95	14	12.84	-	-	-	C	123620360	G	C	123620360	2	2	312	1	0	0	0	0	0	0	0	1	11903	1277	45	2		2	PHF19	9	123620360	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3994357	123620360	17593071	346	34725										
PHF19	0	genome.wustl.edu	37	chr9	123631514	123631514	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctggttggtgcgatggggcGagtcccactcgagctcctcg	16	12	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	123631514	123631514	G	C	SNP	PHF19	ENST00000373896	human	ensembl	69_37n	-1	known	missense	c.560	p.S187W	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403	31	0	0	17	4	19.05	-	-	-	C	123631514	G	C	123631514	3	2	312	1	0	0	0	0	1	0	0	0	11903	1059	37	3	1222	3	PHF19	9	123631514	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	11154	123631514	17581917	347	34726										
OR1J2	0	genome.wustl.edu	37	chr9	125273830	125273830	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catctctctgtggtgtctctCtattatgggtcaatatttgg	9	8	5	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	125273830	125273830	C	T	SNP	OR1J2	ENST00000335302	human	ensembl	69_37n	1	known	silent	c.750	p.L250	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J2	HGNC	ENSG00000197233	353	0	0	205	33	13.81	-	-	-	T	125273830	C	T	125273830	2	4	312	1	0	0	0	0	0	0	0	1	11033	900	32	2		2	OR1J2	9	125273830	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1642316	125273830	15939601	348	34727										
ZNF79	0	genome.wustl.edu	37	chr9	130206951	130206951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaaacctcacgaaccatcaGaggactcacaccggggagaa	10	13	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	130206951	130206951	G	C	SNP	ZNF79	ENST00000342483	human	ensembl	69_37n	1	known	missense	c.972	p.Q324H	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152	184	0	0	85	26	23.42	-	-	-	C	130206951	G	C	130206951	3	2	312	1	0	0	0	0	1	0	0	0	18254	933	33	2	990	2	ZNF79	9	130206951	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4933121	130206951	11006480	349	34728										
ENG	0	genome.wustl.edu	37	chr9	130577980	130577980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctatgccatgctgctggtgGagcagggggtgctctgggtg	19	8	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	130577980	130577980	G	A	SNP	ENG	ENST00000373203	human	ensembl	69_37n	-1	known	missense	c.1958	p.S653F	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	41	0	0	31	4	11.43	-	-	-	A	130577980	G	A	130577980	3	1	312	1	0	0	0	0	1	0	0	0	5154	1174	41	2	22	2	ENG	9	130577980	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	371029	130577980	10635451	350	34729										
ODF2	0	genome.wustl.edu	37	chr9	131236003	131236003	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctccgagacctcctgaggGaacagcactgcaaagaggtg	12	13	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	131236003	131236003	G	T	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	nonsense	c.826	p.E276*	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	94	0	0	43	5	10.42	-	-	-	T	131236003	G	T	131236003	4	4	312	1	0	0	0	0	0	1	0	0	10900	1175	41	2	907	2	ODF2	9	131236003	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	658023	131236003	9977428	351	34730										
ODF2	0	genome.wustl.edu	37	chr9	131250224	131250224	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggaggagaagatgcgggaaGaccgggatagcctggtggag	20	5	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	131250224	131250224	G	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.1456	p.D486N	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	206	0	0	148	20	11.9	-	-	-	A	131250224	G	A	131250224	3	1	312	1	0	0	0	0	1	0	0	0	10900	942	33	2	1561	2	ODF2	9	131250224	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	14221	131250224	9963207	352	34731										
SETX	0	genome.wustl.edu	37	chr9	135202958	135202958	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgaagttcttgactagtcaGaagtttcttattatttctga	7	6	4	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	135202958	135202958	G	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	silent	c.4027	p.L1343	0.374	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	185	0	0	105	14	11.76	-	-	-	A	135202958	G	A	135202958	2	1	312	1	0	0	0	0	0	0	0	1	14229	933	33	2		2	SETX	9	135202958	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3952734	135202958	6010473	353	34732										
C9orf96	0	genome.wustl.edu	37	chr9	136263151	136263151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtccagctcagggccatgaaGaggcttctgaaaatgcctgc	12	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	136263151	136263151	G	C	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	missense	c.1050	p.K350N	0.003	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	111	0	0	62	9	12.68	-	-	-	C	136263151	G	C	136263151	3	2	312	1	0	0	0	0	1	0	0	0	2533	933	33	2	1092	2	C9orf96	9	136263151	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1060193	136263151	4950280	354	34733										
VAV2	0	genome.wustl.edu	37	chr9	136726381	136726381	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaacacgctgcaaatgcatGataaagacacaggcagaggg	11	9	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	136726381	136726381	G	A	SNP	VAV2	ENST00000486113	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VAV2	HGNC	ENSG00000160293	51	0	0	35	6	14.63	-	-	-	A	136726381	G	A	136726381	1	1	312	0	1	0	0	0	0	0	0	0	17229	1305	45	2		2	VAV2	9	136726381	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	463230	136726381	4487050	355	34734										
GPSM1	0	genome.wustl.edu	37	chr9	139232342	139232342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agtttggagacaaggcagccGagaggagggcctacagcaac	15	9	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	9	139232342	139232342	G	A	SNP	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	missense	c.742	p.E248K	1.000	pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	46	0	0	27	10	26.32	-	-	-	A	139232342	G	A	139232342	3	1	312	1	0	0	0	0	1	0	0	0	6785	1059	37	1	764	1	GPSM1	9	139232342	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2505961	139232342	1981089	356	34735										
ITIH2	0	genome.wustl.edu	37	chr10	7768927	7768927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaatagactgtggaagcaatGaagaccatattggatgacct	10	6	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	7768927	7768927	G	A	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	missense	c.999	p.M333I	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	178	0	0	96	12	11.11	-	-	-	A	7768927	G	A	7768927	3	1	312	1	0	0	0	0	1	0	0	0	7958	1290	45	2	1037	2	ITIH2	10	7768927	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		7768927	127765820	357	34736										
ITIH2	0	genome.wustl.edu	37	chr10	7769060	7769060	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagatgccaagaggtatattGagaaaatccagcccagtgga	11	8	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	7769060	7769060	G	A	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	missense	c.1132	p.E378K	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	211	0	0	107	12	10.08	-	-	-	A	7769060	G	A	7769060	3	1	312	1	0	0	0	0	1	0	0	0	7958	1291	45	2	1170	2	ITIH2	10	7769060	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	133	7769060	127765687	358	34737										
ITIH2	0	genome.wustl.edu	37	chr10	7769779	7769779	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcattttggtttctgatggaGatccaacagtgggcaagtgt	12	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	7769779	7769779	G	C	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	missense	c.1267	p.D423H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	245	0	0	103	23	18.25	-	-	-	C	7769779	G	C	7769779	3	2	312	1	0	0	0	0	1	0	0	0	7958	942	33	2	1309	2	ITIH2	10	7769779	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	719	7769779	127764968	359	34738										
CELF2	0	genome.wustl.edu	37	chr10	11207576	11207576	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggagctgaaagaactttttGagccttacggagccgtctac	11	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	11207576	11207576	G	C	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	missense	c.202	p.E68Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	76	0	0	39	7	15.22	-	-	-	C	11207576	G	C	11207576	3	2	312	1	0	0	0	0	1	0	0	0	3245	1291	45	2	265	2	CELF2	10	11207576	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3437797	11207576	124327171	360	34739										
C10orf47	0	genome.wustl.edu	37	chr10	11908538	11908538	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctgtactctaggatgatgaGagcctgaagtacctcaccca	9	12	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	11908538	11908538	G	A	SNP	C10orf47	ENST00000277570	human	ensembl	69_37n	1	known	silent	c.147	p.E49	1.000	NULL	NULL	-	no_errors	C10orf47	HGNC	ENSG00000148426	119	0	0	60	10	14.29	-	-	-	A	11908538	G	A	11908538	2	1	312	1	0	0	0	0	0	0	0	1	1615	933	33	2		2	C10orf47	10	11908538	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	700962	11908538	123626209	361	34740										
OPTN	0	genome.wustl.edu	37	chr10	13164482	13164482	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgatgaagagaaaggcccgGagactgtgagtcctaagatt	13	6	0	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	13164482	13164482	G	C	SNP	OPTN	ENST00000263036	human	ensembl	69_37n	1	known	missense	c.877	p.E293Q	0.915	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	155	0	0	69	12	14.81	-	-	-	C	13164482	G	C	13164482	3	2	312	1	0	0	0	0	1	0	0	0	10962	1175	41	2	899	2	OPTN	10	13164482	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1255944	13164482	122370265	362	34741										
ITGA8	0	genome.wustl.edu	37	chr10	15617552	15617552	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggctcctcttctggttccCagttatgaatgggcagaaca	12	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	15617552	15617552	C	T	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	nonsense	c.2414	p.W805*	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	371	0	0	160	34	17.53	-	-	-	T	15617552	C	T	15617552	4	4	312	1	0	0	0	0	0	1	0	0	7936	595	21	4	805	4	ITGA8	10	15617552	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2453070	15617552	119917195	363	34742										
CUBN	0	genome.wustl.edu	37	chr10	16957164	16957164	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttccacagtatctgcccaaGatgtttcctgtgagagacaa	8	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	16957164	16957164	G	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.7218	p.I2406M	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	115	0	0	44	6	11.76	-	-	-	C	16957164	G	C	16957164	3	2	312	1	0	0	0	0	1	0	0	0	4082	932	33	2	3737	2	CUBN	10	16957164	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1339612	16957164	118577583	364	34743										
APBB1IP	0	genome.wustl.edu	37	chr10	26825036	26825036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaacatctatcattgtaccaGaactggaaggagctctttat	8	8	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	26825036	26825036	G	C	SNP	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	missense	c.934	p.E312Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	123	0	0	37	5	11.9	-	-	-	C	26825036	G	C	26825036	3	2	312	1	0	0	0	0	1	0	0	0	761	943	33	2	964	2	APBB1IP	10	26825036	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9867872	26825036	108709711	365	34744										
ARMC4	0	genome.wustl.edu	37	chr10	28250537	28250537	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgaatttgccaatattctGatggcaaatctgcacttgct	7	9	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	28250537	28250537	G	C	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	nonsense	c.1346	p.S449*	0.981	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	175	0	0	76	10	11.63	-	-	-	C	28250537	G	C	28250537	4	2	312	1	0	0	0	0	0	1	0	0	957	1294	45	2	1832	2	ARMC4	10	28250537	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1425501	28250537	107284210	366	34745										
KIF5B	0	genome.wustl.edu	37	chr10	32326280	32326280	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attaataagaaatatactgtGactcctagagctatgttcat	6	6	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	32326280	32326280	G	T	SNP	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	missense	c.613	p.H205N	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	393	0	0	137	47	25.27	-	-	-	T	32326280	G	T	32326280	3	4	312	1	0	0	0	0	1	0	0	0	8358	1290	45	2	2350	2	KIF5B	10	32326280	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4075743	32326280	103208467	367	34746										
ITGB1	0	genome.wustl.edu	37	chr10	33199373	33199373	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttattgaaggctctgcactGaacacattctctgttacaaa	6	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	33199373	33199373	G	A	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	nonsense	c.1942	p.Q648*	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	132	0	0	83	11	11.7	-	-	-	A	33199373	G	A	33199373	4	1	312	1	0	0	0	0	0	1	0	0	7944	1299	45	2	704	2	ITGB1	10	33199373	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	873093	33199373	102335374	368	34747										
ALOX5	0	genome.wustl.edu	37	chr10	45936913	45936913	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accctacttgttgcctggaaGagcccagcctggccgccttc	10	16	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	45936913	45936913	G	A	SNP	ALOX5	ENST00000475300	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALOX5	HGNC	ENSG00000012779	99	0	0	70	18	20.45	-	-	-	A	45936913	G	A	45936913	1	1	312	0	1	0	0	0	0	0	0	0	540	957	33	2		2	ALOX5	10	45936913	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12737540	45936913	89597834	369	34748										
ERCC6	0	genome.wustl.edu	37	chr10	50732269	50732269	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttgggcagaggcttcagctCatagtcagtaccatctccag	10	12	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	50732269	50732269	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.1207	p.E403K	0.045	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	187	0	0	77	10	11.49	-	-	-	T	50732269	C	T	50732269	3	4	312	1	0	0	0	0	1	0	0	0	5254	835	29	2	3342	2	ERCC6	10	50732269	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4795356	50732269	84802478	370	34749										
RTKN2	0	genome.wustl.edu	37	chr10	63964638	63964638	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agatcaaagaaatgctgccaGaaggcttccatccacttctg	8	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	63964638	63964638	G	C	SNP	RTKN2	ENST00000373789	human	ensembl	69_37n	-1	known	missense	c.1164	p.F388L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	152	0	0	64	15	18.99	-	-	-	C	63964638	G	C	63964638	3	2	312	1	0	0	0	0	1	0	0	0	13809	933	33	2	677	2	RTKN2	10	63964638	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	13232369	63964638	71570109	371	34750										
TET1	0	genome.wustl.edu	37	chr10	70332972	70332972	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acctggatcccattaaaagtGaacatgattgctaccccacc	6	13	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	70332972	70332972	G	A	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.877	p.E293K	0.041	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	66	0	0	24	3	11.11	-	-	-	A	70332972	G	A	70332972	3	1	312	1	0	0	0	0	1	0	0	0	15864	1291	45	2	879	2	TET1	10	70332972	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6368334	70332972	65201775	372	34751										
TACR2	0	genome.wustl.edu	37	chr10	71164725	71164725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaacaaagtctccttagtgtGacacctgttgactctcgtgg	10	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	71164725	71164725	G	A	SNP	TACR2	ENST00000373306	human	ensembl	69_37n	-1	known	missense	c.1054	p.H352Y	1.000	prints_NK2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073	235	0	0	137	16	10.46	-	-	-	A	71164725	G	A	71164725	3	1	312	1	0	0	0	0	1	0	0	0	15598	1290	45	2	146	2	TACR2	10	71164725	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	831753	71164725	64370022	373	34752										
ADAMTS14	0	genome.wustl.edu	37	chr10	72503854	72503854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacaaggaggtggggtccatGaaggcggatgacaagtgtgg	19	5	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	72503854	72503854	G	A	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.2100	p.M700I	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	65	0	0	31	7	18.42	-	-	-	A	72503854	G	A	72503854	3	1	312	1	0	0	0	0	1	0	0	0	259	1290	45	2	2154	2	ADAMTS14	10	72503854	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1339129	72503854	63030893	374	34753										
P4HA1	0	genome.wustl.edu	37	chr10	74831931	74831931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttagccgatctaacttctCtgcccatctacagatgtaaa	6	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	74831931	74831931	C	G	SNP	P4HA1	ENST00000263556	human	ensembl	69_37n	-1	known	missense	c.181	p.E61Q	1.000	pfam_Pro_4_hyd_alph_N	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884	259	0	0	99	23	18.85	-	-	-	G	74831931	C	G	74831931	3	3	312	1	0	0	0	0	1	0	0	0	11429	922	32	2	1546	2	P4HA1	10	74831931	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2328077	74831931	60702816	375	34754										
SAMD8	0	genome.wustl.edu	37	chr10	76924411	76924411	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttctgttccagcgttcctaGaatcccatgggcctttgcca	8	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	76924411	76924411	G	C	SNP	SAMD8	ENST00000372690	human	ensembl	69_37n	1	known	missense	c.776	p.R259T	1.000	NULL	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671	446	0	0	204	35	14.64	-	-	-	C	76924411	G	C	76924411	3	2	312	1	0	0	0	0	1	0	0	0	13911	942	33	2	593	2	SAMD8	10	76924411	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2092480	76924411	58610336	376	34755										
IFIT2	0	genome.wustl.edu	37	chr10	91066854	91066854	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atctgcggtatggcaactttCagctgtaccaaatgaagtgt	10	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	91066854	91066854	C	A	SNP	IFIT2	ENST00000371826	human	ensembl	69_37n	1	known	missense	c.1141	p.Q381K	0.995	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922	155	0	0	88	11	11.11	-	-	-	A	91066854	C	A	91066854	3	1	312	1	0	0	0	0	1	0	0	0	7577	827	29	2	1147	2	IFIT2	10	91066854	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14142443	91066854	44467893	377	34756										
IDE	0	genome.wustl.edu	37	chr10	94239162	94239162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catgttacagtgcaaggggtCcacataagcaaatgggctgg	13	8	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	94239162	94239162	C	G	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.1756	p.D586H	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	219	0	0	109	18	14.17	-	-	-	G	94239162	C	G	94239162	3	3	312	1	0	0	0	0	1	0	0	0	7547	855	30	2	1347	2	IDE	10	94239162	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3172308	94239162	41295585	378	34757										
ZNF518A	0	genome.wustl.edu	37	chr10	97918542	97918542	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagtcatttcaaaaacacgaGagagaaggcaaaattgttga	9	6	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	97918542	97918542	G	C	SNP	ZNF518A	ENST00000316045	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	87	0	0	47	6	11.32	-	-	-	C	97918542	G	C	97918542	1	2	312	0	1	0	0	0	0	0	0	0	18058	933	33	2		2	ZNF518A	10	97918542	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3679380	97918542	37616205	379	34758										
ZNF518A	0	genome.wustl.edu	37	chr10	97919631	97919631	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagattataggaggagagcaGaaagagccagaatctagaga	13	5	1	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	97919631	97919631	G	A	SNP	ZNF518A	ENST00000316045	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	126	0	0	68	12	15	-	-	-	A	97919631	G	A	97919631	1	1	312	0	1	0	0	0	0	0	0	0	18058	933	33	2		2	ZNF518A	10	97919631	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1089	97919631	37615116	380	34759										
HPS1	0	genome.wustl.edu	37	chr10	100179913	100179913	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gccagctggatcagagaccaGacctggggaaaagacagcaa	13	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	100179913	100179913	G	A	SNP	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	silent	c.1746	p.V582	0.992	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	105	0	0	53	8	13.11	-	-	-	A	100179913	G	A	100179913	2	1	312	1	0	0	0	0	0	0	0	1	7390	929	33	2		2	HPS1	10	100179913	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2260282	100179913	35354834	381	34760										
SEMA4G	0	genome.wustl.edu	37	chr10	102743096	102743096	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgaagacccgctctgtgctCcggggtgatgatgtcctcct	12	13	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	102743096	102743096	C	T	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	silent	c.1740	p.L580	0.991	smart_Ig_sub,pfscan_Ig-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	84	0	0	58	10	14.71	-	-	-	T	102743096	C	T	102743096	2	4	312	1	0	0	0	0	0	0	0	1	14124	842	30	2		2	SEMA4G	10	102743096	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2563183	102743096	32791651	382	34761										
SMC3	0	genome.wustl.edu	37	chr10	112340694	112340694	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaacagcaccagattctcaGagattaaagctattaagaga	8	8	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	112340694	112340694	G	C	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.462	p.Q154H	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	159	0	0	74	14	15.91	-	-	-	C	112340694	G	C	112340694	3	2	312	1	0	0	0	0	1	0	0	0	14873	933	33	2	492	2	SMC3	10	112340694	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9597598	112340694	23194053	383	34762										
ABLIM1	0	genome.wustl.edu	37	chr10	116205085	116205085	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaaaccttcattaattgctCttcttgaagctgccgacgtc	6	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	116205085	116205085	C	G	SNP	ABLIM1	ENST00000277895	human	ensembl	69_37n	-1	known	missense	c.2017	p.E673Q	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204	338	0	0	160	21	11.6	-	-	-	G	116205085	C	G	116205085	3	3	312	1	0	0	0	0	1	0	0	0	94	922	32	2	551	2	ABLIM1	10	116205085	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3864391	116205085	19329662	384	34763										
FGFR2	0	genome.wustl.edu	37	chr10	123241689	123241689	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatgaagccataaactttcaGatctgataggaaaaaaacag	7	6	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	123241689	123241689	G	T	SNP	FGFR2	ENST00000369056	human	ensembl	69_37n	-1	known	silent	c.2307	p.I769	0.996	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR2	HGNC	ENSG00000066468	199	0	0	76	14	15.56	-	-	-	T	123241689	G	T	123241689	2	4	312	1	0	0	0	0	0	0	0	1	5912	932	33	2		2	FGFR2	10	123241689	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7036604	123241689	12293058	385	34764										
KNDC1	0	genome.wustl.edu	37	chr10	135025317	135025317	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaggaggatgccagacccttCaacgccctctgtaagaggct	12	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	135025317	135025317	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	silent	c.4197	p.F1399	0.813	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	49	0	0	33	5	13.16	-	-	-	T	135025317	C	T	135025317	2	4	312	1	0	0	0	0	0	0	0	1	8479	825	29	2		2	KNDC1	10	135025317	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11783628	135025317	509430	386	34765										
TUBGCP2	0	genome.wustl.edu	37	chr10	135106140	135106140	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tagctgaagctcctgtcgtgGagcaggctcagcgtggaccc	14	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	10	135106140	135106140	G	A	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	silent	c.1161	p.L387	0.822	pfam_Spc97_Spc98	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	133	0	0	67	15	18.29	-	-	-	A	135106140	G	A	135106140	2	1	312	1	0	0	0	0	0	0	0	1	16863	1161	41	2		2	TUBGCP2	10	135106140	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	80823	135106140	428607	387	34766										
PDDC1	0	genome.wustl.edu	37	chr11	774048	774048	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcggggctggcgtaagccttGaggcggaagtcttgcaccca	16	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	774048	774048	G	C	SNP	PDDC1	ENST00000397472	human	ensembl	69_37n	-1	known	silent	c.207	p.L69	0.994	NULL	pfam_ThiJ/PfpI	-	no_errors	PDDC1	HGNC	ENSG00000177225	79	0	0	35	9	20.45	-	-	-	C	774048	G	C	774048	2	2	312	1	0	0	0	0	0	0	0	1	11702	1277	45	2		2	PDDC1	11	774048	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		774048	134232468	388	34767										
CD151	0	genome.wustl.edu	37	chr11	838147	838147	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acacaggtctttggcatgatCttcacgtgctgcctgtacag	10	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	838147	838147	C	A	SNP	CD151	ENST00000322008	human	ensembl	69_37n	1	known	silent	c.717	p.I239	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD151	HGNC	ENSG00000177697	181	0	0	88	12	12	-	-	-	A	838147	C	A	838147	2	1	312	1	0	0	0	0	0	0	0	1	2994	903	32	2		2	CD151	11	838147	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	64099	838147	134168369	389	34768										
OR51E1	0	genome.wustl.edu	37	chr11	4674549	4674549	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggattgtccatggtgcatCgctttagcaagcggcgtgac	13	9	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	4674549	4674549	C	G	SNP	OR51E1	ENST00000396952	human	ensembl	69_37n	1	known	missense	c.793	p.R265G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785	291	0	0	141	25	15.06	-	-	-	G	4674549	C	G	4674549	3	3	312	1	0	0	0	0	1	0	0	0	11167	884	31	3	795	3	OR51E1	11	4674549	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3836402	4674549	130331967	390	34769										
OR56B4	0	genome.wustl.edu	37	chr11	6129491	6129491	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgctcaggaatggcctgttGaccatcccagtgcctatact	9	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	6129491	6129491	G	A	SNP	OR56B4	ENST00000316529	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56B4	HGNC	ENSG00000180919	154	0	0	76	13	14.61	-	-	-	A	6129491	G	A	6129491	2	1	312	1	0	0	0	0	0	0	0	1	11211	1281	45	2		2	OR56B4	11	6129491	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1454942	6129491	128877025	391	34770										
FAM160A2	0	genome.wustl.edu	37	chr11	6244989	6244989	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggcgagaaaagagaagaaGacggggagcggctccaggct	17	7	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	6244989	6244989	G	C	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.628	p.L210V	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	55	0	0	28	4	12.5	-	-	-	C	6244989	G	C	6244989	3	2	312	1	0	0	0	0	1	0	0	0	5509	942	33	2	2372	2	FAM160A2	11	6244989	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	115498	6244989	128761527	392	34771										
PPFIBP2	0	genome.wustl.edu	37	chr11	7650743	7650743	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaccagtaccggaaggtaaaGgagattgtgatggtcactca	12	7	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	7650743	7650743	G	C	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.942	p.K314N	0.997	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	268	0	0	118	19	13.87	-	-	-	C	7650743	G	C	7650743	3	2	312	1	0	0	0	0	1	0	0	0	12387	991	35	4	976	4	PPFIBP2	11	7650743	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1405754	7650743	127355773	393	34772										
RIC3	0	genome.wustl.edu	37	chr11	8132155	8132155	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgacacttgaacacagtgaaGaaagtgcagggcacagggcc	13	9	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	8132155	8132155	G	A	SNP	RIC3	ENST00000530060	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RIC3	HGNC	ENSG00000166405	47	0	0	19	12	38.71	-	-	-	A	8132155	G	A	8132155	1	1	312	0	1	0	0	0	0	0	0	0	13438	957	33	2		2	RIC3	11	8132155	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	481412	8132155	126874361	394	34773										
DENND5A	0	genome.wustl.edu	37	chr11	9161334	9161334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtctttgatcagtgccacatCctcatacatgtgtgcagtga	9	10	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	9161334	9161334	C	G	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	missense	c.3748	p.D1250H	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	173	0	0	84	11	11.58	-	-	-	G	9161334	C	G	9161334	3	3	312	1	0	0	0	0	1	0	0	0	4472	855	30	2	119	2	DENND5A	11	9161334	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1029179	9161334	125845182	395	34774										
LDHC	0	genome.wustl.edu	37	chr11	18467850	18467850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccattttgaaaaatcttagGagagtgcacccagtttccac	7	10	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	18467850	18467850	G	C	SNP	LDHC	ENST00000280704	human	ensembl	69_37n	1	known	missense	c.804	p.R268S	0.997	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHC	HGNC	ENSG00000166796	327	0	0	156	26	14.29	-	-	-	C	18467850	G	C	18467850	3	2	312	1	0	0	0	0	1	0	0	0	8756	1165	41	2	826	2	LDHC	11	18467850	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9306516	18467850	116538666	396	34775										
TMEM86A	0	genome.wustl.edu	37	chr11	18723509	18723509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcgtcgccttgtcagctgtcGaaagccgggagcctgtggaa	14	11	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	18723509	18723509	G	A	SNP	TMEM86A	ENST00000280734	human	ensembl	69_37n	1	known	missense	c.676	p.E226K	1.000	NULL	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117	114	0	0	75	10	11.76	-	-	-	A	18723509	G	A	18723509	3	1	312	1	0	0	0	0	1	0	0	0	16303	1059	37	1	686	1	TMEM86A	11	18723509	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	255659	18723509	116283007	397	34776										
ZDHHC13	0	genome.wustl.edu	37	chr11	19173724	19173724	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggccagaaccaactggatttCttttaaagtttaatccttct	6	9	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	19173724	19173724	C	G	SNP	ZDHHC13	ENST00000446113	human	ensembl	69_37n	1	known	missense	c.604	p.L202V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC13	HGNC	ENSG00000177054	169	0	0	87	10	10.31	-	-	-	G	19173724	C	G	19173724	3	3	312	1	0	0	0	0	1	0	0	0	17699	913	32	2	630	2	ZDHHC13	11	19173724	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	450215	19173724	115832792	398	34777										
QSER1	0	genome.wustl.edu	37	chr11	32990666	32990666	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaagagacttcttttgaatCttcatttggatcaatcattc	6	7	5	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	32990666	32990666	C	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.4795	p.L1599I	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	168	0	0	75	9	10.71	-	-	-	A	32990666	C	A	32990666	3	1	312	1	0	0	0	0	1	0	0	0	12965	913	32	2	4825	2	QSER1	11	32990666	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	13816942	32990666	102015850	399	34778										
PAMR1	0	genome.wustl.edu	37	chr11	35454436	35454436	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggatgcagaatgatagcaGaaatctacaaatgcaaggaa	11	5	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	35454436	35454436	G	C	SNP	PAMR1	ENST00000278360	human	ensembl	69_37n	-1	known	missense	c.1682	p.S561C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_EGF-like,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PAMR1	HGNC	ENSG00000149090	63	0	0	38	9	19.15	-	-	-	C	35454436	G	C	35454436	3	2	312	1	0	0	0	0	1	0	0	0	11486	942	33	2	535	2	PAMR1	11	35454436	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2463770	35454436	99552080	400	34779										
C11orf94	0	genome.wustl.edu	37	chr11	45928734	45928734	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcagtgccactgccaggatGaggtggaggaagaggctgag	18	7	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	45928734	45928734	G	A	SNP	C11orf94	ENST00000449465	human	ensembl	69_37n	-1	known	silent	c.63	p.L21	0.000	NULL	NULL	-	no_errors	C11orf94	HGNC	ENSG00000234776	27	0	0	24	5	17.24	-	-	-	A	45928734	G	A	45928734	2	1	312	1	0	0	0	0	0	0	0	1	1685	1277	45	2		2	C11orf94	11	45928734	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10474298	45928734	89077782	401	34780										
OR4C11	0	genome.wustl.edu	37	chr11	55371784	55371784	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagattacaaacactattttCtgcctcaagggatcctgtgt	7	9	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	55371784	55371784	C	T	SNP	OR4C11	ENST00000302231	human	ensembl	69_37n	-1	known	silent	c.66	p.Q22	0.073	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C11	HGNC	ENSG00000172188	117	0	0	39	8	17.02	-	-	-	T	55371784	C	T	55371784	2	4	312	1	0	0	0	0	0	0	0	1	11118	912	32	2		2	OR4C11	11	55371784	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9443050	55371784	79634732	402	34781										
OR8K1	0	genome.wustl.edu	37	chr11	56114208	56114208	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtttattctagtggccattCtcagaatgaactcaaggaaa	8	7	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	56114208	56114208	C	T	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.694	p.L232F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	250	0	0	101	15	12.93	-	-	-	T	56114208	C	T	56114208	3	4	312	1	0	0	0	0	1	0	0	0	11316	913	32	2	696	2	OR8K1	11	56114208	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	742424	56114208	78892308	403	34782										
PRG2	0	genome.wustl.edu	37	chr11	57156626	57156626	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atctggcactgagatagactCaacagccccatctttcttgg	8	12	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	57156626	57156626	C	T	SNP	PRG2	ENST00000311862	human	ensembl	69_37n	-1	known	missense	c.223	p.E75K	0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG2	HGNC	ENSG00000186652	162	0	0	73	10	12.05	-	-	-	T	57156626	C	T	57156626	3	4	312	1	0	0	0	0	1	0	0	0	12560	835	29	2	461	2	PRG2	11	57156626	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1042418	57156626	77849890	404	34783										
ZDHHC5	0	genome.wustl.edu	37	chr11	57461342	57461342	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcagatgggcagataactgtGaagatcatggataatggcat	12	5	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	57461342	57461342	G	A	SNP	ZDHHC5	ENST00000287169	human	ensembl	69_37n	1	known	silent	c.840	p.V280	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599	163	0	0	81	14	14.58	-	-	-	A	57461342	G	A	57461342	2	1	312	1	0	0	0	0	0	0	0	1	17714	1277	45	2		2	ZDHHC5	11	57461342	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	304716	57461342	77545174	405	34784										
OR5B17	0	genome.wustl.edu	37	chr11	58125988	58125988	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgtgtttctcagagcaggtCagagtaatgactgctggttt	12	6	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	58125988	58125988	C	T	SNP	OR5B17	ENST00000357377	human	ensembl	69_37n	-1	known	silent	c.555	p.L185	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786	93	0	0	40	13	24.53	-	-	-	T	58125988	C	T	58125988	2	4	312	1	0	0	0	0	0	0	0	1	11222	813	29	2		2	OR5B17	11	58125988	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	664646	58125988	76880528	406	34785										
OR4D6	0	genome.wustl.edu	37	chr11	59224695	59224695	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctggtggatcttttatcaGacaggaaaaccatctcctac	7	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	59224695	59224695	G	A	SNP	OR4D6	ENST00000300127	human	ensembl	69_37n	1	known	missense	c.262	p.D88N	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	327	0	0	156	29	15.68	-	-	-	A	59224695	G	A	59224695	3	1	312	1	0	0	0	0	1	0	0	0	11131	942	33	2	264	2	OR4D6	11	59224695	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1098707	59224695	75781821	407	34786										
GIF	0	genome.wustl.edu	37	chr11	59603335	59603335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggacaacaagtaacactgacCcacttttcacactaacattg	5	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	59603335	59603335	C	G	SNP	GIF	ENST00000257248	human	ensembl	69_37n	-1	known	missense	c.1019	p.G340A	0.336	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812	298	0	0	164	25	13.16	-	-	-	G	59603335	C	G	59603335	3	3	312	1	0	0	0	0	1	0	0	0	6428	623	22	4	246	4	GIF	11	59603335	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	378640	59603335	75403181	408	34787										
AHNAK	0	genome.wustl.edu	37	chr11	62285902	62285902	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccaccgacaccactgaggttGagccctggagcatgcacctt	10	15	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	62285902	62285902	G	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.15987	p.L5329	0.708	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	59	0	0	36	4	10	-	-	-	C	62285902	G	C	62285902	2	2	312	1	0	0	0	0	0	0	0	1	414	1277	45	2		2	AHNAK	11	62285902	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2682567	62285902	72720614	409	34788										
MTA2	0	genome.wustl.edu	37	chr11	62365556	62365556	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	accaactctaatctcgccctGatcagcgagaagtgtcttct	7	13	5	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	62365556	62365556	G	A	SNP	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	nonsense	c.430	p.Q144*	1.000	smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	106	0	0	68	11	13.92	-	-	-	A	62365556	G	A	62365556	4	1	312	1	0	0	0	0	0	1	0	0	9981	1299	45	2	1628	2	MTA2	11	62365556	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	79654	62365556	72640960	410	34789										
FCHSD2	0	genome.wustl.edu	37	chr11	72712106	72712106	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatgaagtttttatagttttCacatatattcatccgagact	5	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	72712106	72712106	C	G	SNP	FCHSD2	ENST00000409418	human	ensembl	69_37n	-1	known	missense	c.316	p.E106Q	1.000	pfam_FCH,smart_FCH	pfam_SH3_domain,pfam_FCH,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	FCHSD2	HGNC	ENSG00000137478	191	0	0	91	15	14.02	-	-	-	G	72712106	C	G	72712106	3	3	312	1	0	0	0	0	1	0	0	0	5836	835	29	2	1970	2	FCHSD2	11	72712106	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10346550	72712106	62294410	411	34790										
MOGAT2	0	genome.wustl.edu	37	chr11	75442295	75442295	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaggcccacaaacttaagttCaacatccctgctgaccagca	7	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	75442295	75442295	C	G	SNP	MOGAT2	ENST00000198801	human	ensembl	69_37n	1	known	missense	c.969	p.F323L	1.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT2	HGNC	ENSG00000166391	92	0	0	52	10	15.87	-	-	-	G	75442295	C	G	75442295	3	3	312	1	0	0	0	0	1	0	0	0	9767	825	29	2	991	2	MOGAT2	11	75442295	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2730189	75442295	59564221	412	34791										
LRRC32	0	genome.wustl.edu	37	chr11	76371263	76371263	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggaggaaggcccctgccctGagcagctctatctcattatc	10	13	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	76371263	76371263	G	C	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	silent	c.1374	p.L458	0.439	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	44	0	0	17	4	19.05	-	-	-	C	76371263	G	C	76371263	2	2	312	1	0	0	0	0	0	0	0	1	9053	1277	45	2		2	LRRC32	11	76371263	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	928968	76371263	58635253	413	34792										
INTS4	0	genome.wustl.edu	37	chr11	77632422	77632422	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agatgagaaagactgtctcgGaggtaggcatagtgcctgaa	14	6	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	77632422	77632422	G	A	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	silent	c.1728	p.L576	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	170	0	0	81	17	17.35	-	-	-	A	77632422	G	A	77632422	2	1	312	1	0	0	0	0	0	0	0	1	7834	1161	41	2		2	INTS4	11	77632422	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1261159	77632422	57374094	414	34793										
ODZ4	0	genome.wustl.edu	37	chr11	78383321	78383321	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cggtggtcatcatagatcttCtctgtgcgtgttacgcgatc	11	10	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	78383321	78383321	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.5550	p.E1850	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	171	0	0	95	21	18.1	-	-	-	T	78383321	C	T	78383321	2	4	312	1	0	0	0	0	0	0	0	1	10910	912	32	2		2	ODZ4	11	78383321	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	750899	78383321	56623195	415	34794										
TRIM49	0	genome.wustl.edu	37	chr11	89531369	89531369	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attagggatggtgtatattaGggagctttgattaacatcaa	11	3	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	89531369	89531369	G	T	SNP	TRIM49	ENST00000329758	human	ensembl	69_37n	-1	known	missense	c.1288	p.L430I	0.006	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49	HGNC	ENSG00000168930	85	0	0	46	6	11.54	-	-	-	T	89531369	G	T	89531369	3	4	312	1	0	0	0	0	1	0	0	0	16620	991	35	4	74	4	TRIM49	11	89531369	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	11148048	89531369	45475147	416	34795										
DYNC2H1	0	genome.wustl.edu	37	chr11	103019265	103019265	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttactgaggctatggaagtCttaacaattatgccccagtc	9	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	103019265	103019265	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	silent	c.2865	p.V955	0.682	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	325	0	0	141	25	15.06	-	-	-	G	103019265	C	G	103019265	2	3	312	1	0	0	0	0	0	0	0	1	4881	900	32	2		2	DYNC2H1	11	103019265	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	13487896	103019265	31987251	417	34796										
ALKBH8	0	genome.wustl.edu	37	chr11	107403094	107403094	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgacgaggcaacataactggCactgcaatgccatctgggtg	12	11	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	107403094	107403094	C	T	SNP	ALKBH8	ENST00000417449	human	ensembl	69_37n	-1	known	silent	c.819	p.V273	0.993	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760	139	0	0	55	13	19.12	-	-	-	T	107403094	C	T	107403094	2	4	312	1	0	0	0	0	0	0	0	1	533	697	25	4		4	ALKBH8	11	107403094	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4383829	107403094	27603422	418	34797										
EXPH5	0	genome.wustl.edu	37	chr11	108384453	108384453	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgacttaccaactcactaGatttgacgtgatagcttgaa	8	8	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	108384453	108384453	G	C	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.1781	p.S594C	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	111	0	0	43	8	15.69	-	-	-	C	108384453	G	C	108384453	3	2	312	1	0	0	0	0	1	0	0	0	5359	942	33	2	4192	2	EXPH5	11	108384453	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	981359	108384453	26622063	419	34798										
ZW10	0	genome.wustl.edu	37	chr11	113644308	113644308	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atctcctccacccgccgggtCaggcggctgatccgggtccc	12	18	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	113644308	113644308	C	T	SNP	ZW10	ENST00000200135	human	ensembl	69_37n	-1	known	silent	c.81	p.L27	1.000	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827	99	0	0	55	7	11.29	-	-	-	T	113644308	C	T	113644308	2	4	312	1	0	0	0	0	0	0	0	1	18338	813	29	2		2	ZW10	11	113644308	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5259855	113644308	21362208	420	34799										
MLL	0	genome.wustl.edu	37	chr11	118363787	118363787	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aataggctgccaagcctccaGacttaaatcccgagacagag	9	12	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	118363787	118363787	G	C	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.5011	p.D1671H	1.000	smart_Bromodomain,pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	106	0	0	57	10	14.71	-	-	-	C	118363787	G	C	118363787	3	2	312	1	0	0	0	0	1	0	0	0	9691	942	33	2	5073	2	MLL	11	118363787	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4719479	118363787	16642729	421	34800										
ABCG4	0	genome.wustl.edu	37	chr11	119029576	119029576	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtcttcatgagggagcacctCaactactggtacagcctcaa	9	12	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	119029576	119029576	C	G	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	silent	c.1374	p.L458	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	142	0	0	88	10	10.2	-	-	-	G	119029576	C	G	119029576	2	3	312	1	0	0	0	0	0	0	0	1	70	813	29	2		2	ABCG4	11	119029576	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	665789	119029576	15976940	422	34801										
EI24	0	genome.wustl.edu	37	chr11	125448876	125448876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctggcatttgaggtatcagGgaggaagcctcacccattcc	11	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	125448876	125448876	G	A	SNP	EI24	ENST00000278903	human	ensembl	69_37n	1	known	missense	c.473	p.G158E	1.000	NULL	NULL	-	no_errors	EI24	HGNC	ENSG00000149547	258	0	0	134	20	12.99	-	-	-	A	125448876	G	A	125448876	3	1	312	1	0	0	0	0	1	0	0	0	5020	1232	43	4	495	4	EI24	11	125448876	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6419300	125448876	9557640	423	34802										
FAM118B	0	genome.wustl.edu	37	chr11	126110856	126110856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgatcttttagaagatgagGagagcaaaaagtttcagaaa	10	3	2	6			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	126110856	126110856	G	A	SNP	FAM118B	ENST00000533050	human	ensembl	69_37n	1	known	missense	c.256	p.E86K	1.000	NULL	NULL	-	no_errors	FAM118B	HGNC	ENSG00000197798	104	0	0	35	5	12.5	-	-	-	A	126110856	G	A	126110856	3	1	312	1	0	0	0	0	1	0	0	0	5452	1175	41	2	262	2	FAM118B	11	126110856	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	661980	126110856	8895660	424	34803										
ARHGAP32	0	genome.wustl.edu	37	chr11	128839196	128839196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggagtgtttctctggggcaGaaggctgcctaacccagggt	15	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	11	128839196	128839196	G	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	missense	c.5870	p.S1957C	0.761	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	104	0	0	66	12	15.19	-	-	-	C	128839196	G	C	128839196	3	2	312	1	0	0	0	0	1	0	0	0	883	942	33	2	397	2	ARHGAP32	11	128839196	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2728340	128839196	6167320	425	34804										
NCAPD2	0	genome.wustl.edu	37	chr12	6640219	6640219	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaacccaaagttgtcttctCaagtgatgagtccagtgagg	11	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	6640219	6640219	C	T	SNP	NCAPD2	ENST00000315579	human	ensembl	69_37n	1	known	missense	c.4097	p.S1366L	0.986	pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	78	0	0	57	9	13.64	-	-	-	T	6640219	C	T	6640219	3	4	312	1	0	0	0	0	1	0	0	0	10277	838	29	2	4215	2	NCAPD2	12	6640219	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09		6640219	127211676	426	34805										
PTPN6	0	genome.wustl.edu	37	chr12	7069833	7069833	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctgtcctctaggagcttgGagtctagtgcagggaccgtg	14	10	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	7069833	7069833	G	C	SNP	PTPN6	ENST00000456013	human	ensembl	69_37n	1	known	missense	c.1681	p.E561Q	0.000	pirsf_Tyr_Pase_non-rcpt_typ-6/11	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN6	HGNC	ENSG00000111679	75	0	0	58	10	14.29	-	-	-	C	7069833	G	C	7069833	3	2	312	1	0	0	0	0	1	0	0	0	12875	1175	41	2	1757	2	PTPN6	12	7069833	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	429614	7069833	126782062	427	34806										
ATF7IP	0	genome.wustl.edu	37	chr12	14610211	14610211	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agagtgcaccaccatcctttCaaactcctgtgaatacaggt	7	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	14610211	14610211	C	T	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	nonsense	c.2140	p.Q714*	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	240	0	0	93	26	21.85	-	-	-	T	14610211	C	T	14610211	4	4	312	1	0	0	0	0	0	1	0	0	1091	827	29	2	2166	2	ATF7IP	12	14610211	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7540378	14610211	119241684	428	34807										
PLBD1	0	genome.wustl.edu	37	chr12	14688648	14688648	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtatctttatctatgacgttGaagtcccagtgtttatatat	7	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	14688648	14688648	G	A	SNP	PLBD1	ENST00000240617	human	ensembl	69_37n	-1	known	silent	c.789	p.F263	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	240	0	0	168	23	12.04	-	-	-	A	14688648	G	A	14688648	2	1	312	1	0	0	0	0	0	0	0	1	12099	1281	45	2		2	PLBD1	12	14688648	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	78437	14688648	119163247	429	34808										
ERP27	0	genome.wustl.edu	37	chr12	15087835	15087835	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccagtgatgttgtagtgtgtCagaacctcagaatcagtgct	11	8	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	15087835	15087835	C	T	SNP	ERP27	ENST00000266397	human	ensembl	69_37n	-1	known	silent	c.288	p.L96	0.235	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055	154	0	0	89	14	13.59	-	-	-	T	15087835	C	T	15087835	2	4	312	1	0	0	0	0	0	0	0	1	5278	813	29	2		2	ERP27	12	15087835	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	399187	15087835	118764060	430	34809										
PLEKHA5	0	genome.wustl.edu	37	chr12	19422772	19422772	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggaaatggagttgtggatGaaagccatgttagatgctgc	14	4	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	19422772	19422772	G	T	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	missense	c.780	p.M260I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	155	0	0	93	14	13.08	-	-	-	T	19422772	G	T	19422772	3	4	312	1	0	0	0	0	1	0	0	0	12133	1290	45	2	814	2	PLEKHA5	12	19422772	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4334937	19422772	114429123	431	34810										
PDE3A	0	genome.wustl.edu	37	chr12	20766419	20766419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggacatcgccgtcatgggcGaggcccacggcctcattacc	12	15	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	20766419	20766419	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.1054	p.E352K	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	62	0	0	41	9	18	-	-	-	A	20766419	G	A	20766419	3	1	312	1	0	0	0	0	1	0	0	0	11710	1059	37	1	1064	1	PDE3A	12	20766419	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1343647	20766419	113085476	432	34811										
ABCC9	0	genome.wustl.edu	37	chr12	22005123	22005123	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatgtccttcaaagttccttCtcttaggacacttccatctt	4	12	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	22005123	22005123	C	G	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.2677	p.E893Q	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	329	0	0	190	28	12.84	-	-	-	G	22005123	C	G	22005123	3	3	312	1	0	0	0	0	1	0	0	0	59	922	32	2	2182	2	ABCC9	12	22005123	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1238704	22005123	111846772	433	34812										
PPFIBP1	0	genome.wustl.edu	37	chr12	27809661	27809661	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggggttgaaattgttgataGaggtaagaagatatatttca	12	1	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	27809661	27809661	G	C	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	missense	c.902	p.R301T	0.991	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	135	0	0	65	9	12.16	-	-	-	C	27809661	G	C	27809661	3	2	312	1	0	0	0	0	1	0	0	0	12386	942	33	2	877	2	PPFIBP1	12	27809661	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5804538	27809661	106042234	434	34813										
OVCH1	0	genome.wustl.edu	37	chr12	29628064	29628064	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccatcacttttaaagtatatCaccgtcatgttactagaact	4	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	29628064	29628064	C	T	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	silent	c.1530	p.V510	0.077	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	169	0	0	46	15	24.59	-	-	-	T	29628064	C	T	29628064	2	4	312	1	0	0	0	0	0	0	0	1	11396	813	29	2		2	OVCH1	12	29628064	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1818403	29628064	104223831	435	34814										
SLC2A13	0	genome.wustl.edu	37	chr12	40153856	40153856	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catcagaagcatcattgtcaGaaagatgatagttacttccc	7	9	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	40153856	40153856	G	C	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	missense	c.1919	p.S640C	1.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	316	0	0	153	25	14.04	-	-	-	C	40153856	G	C	40153856	3	2	312	1	0	0	0	0	1	0	0	0	14631	942	33	2	31	2	SLC2A13	12	40153856	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10525792	40153856	93698039	436	34815										
CNTN1	0	genome.wustl.edu	37	chr12	41414189	41414189	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taaaagtcttatcatcttctGagatatctgttcattgggaa	7	6	6	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	41414189	41414189	G	C	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2470	p.E824Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	129	0	0	58	8	12.12	-	-	-	C	41414189	G	C	41414189	3	2	312	1	0	0	0	0	1	0	0	0	3670	1291	45	2	2544	2	CNTN1	12	41414189	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1260333	41414189	92437706	437	34816										
ADAMTS20	0	genome.wustl.edu	37	chr12	43769235	43769235	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttttgctgaaaacagtgtatCcagcagctaagtgtccattg	9	8	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	43769235	43769235	C	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.5393	p.G1798A	1.000	pfam_Pept_M12B_GON-ADAMTSs,pfscan_Pept_M12B_GON-ADAMTSs	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	346	0	0	167	25	13.02	-	-	-	G	43769235	C	G	43769235	3	3	312	1	0	0	0	0	1	0	0	0	266	855	30	2	354	2	ADAMTS20	12	43769235	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2355046	43769235	90082660	438	34817										
TARBP2	0	genome.wustl.edu	37	chr12	53895905	53895905	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtacgaccttctcaaagccGagggccaagcccaccagcct	9	16	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	53895905	53895905	G	T	SNP	TARBP2	ENST00000266987	human	ensembl	69_37n	1	known	nonsense	c.160	p.E54*	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	TARBP2	HGNC	ENSG00000139546	106	0	0	75	12	13.79	-	-	-	T	53895905	G	T	53895905	4	4	312	1	0	0	0	0	0	1	0	0	15648	1059	37	3	166	3	TARBP2	12	53895905	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10126670	53895905	79955990	439	34818										
METTL7B	0	genome.wustl.edu	37	chr12	56075776	56075776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctactggagctgggctgcGgaaccggagccaactttcag	13	13	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	56075776	56075776	G	A	SNP	METTL7B	ENST00000394252	human	ensembl	69_37n	1	known	missense	c.238	p.G80R	0.999	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	METTL7B	HGNC	ENSG00000170439	122	0	0	56	11	16.42	-	-	-	A	56075776	G	A	56075776	3	1	312	1	0	0	0	0	1	0	0	0	9577	1117	39	1	240	1	METTL7B	12	56075776	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2179871	56075776	77776119	440	34819										
APOF	0	genome.wustl.edu	37	chr12	56755654	56755654	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcattcacaccaccctggcgGtagagctgtagctgtagagc	12	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	56755654	56755654	G	T	SNP	APOF	ENST00000398189	human	ensembl	69_37n	-1	known	nonsense	c.336	p.Y112*	0.001	NULL	NULL	-	no_errors	APOF	HGNC	ENSG00000175336	166	0	0	105	25	19.23	-	-	-	T	56755654	G	T	56755654	4	4	312	1	0	0	0	0	0	1	0	0	805	1256	44	4	648	4	APOF	12	56755654	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	679878	56755654	77096241	441	34820										
GLI1	0	genome.wustl.edu	37	chr12	57865236	57865236	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtgtaattatgttcaatctCaacaggagctactgtgggag	11	6	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	57865236	57865236	C	G	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	missense	c.2713	p.Q905E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	67	0	0	36	8	18.18	-	-	-	G	57865236	C	G	57865236	3	3	312	1	0	0	0	0	1	0	0	0	6489	827	29	2	2755	2	GLI1	12	57865236	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1109582	57865236	75986659	442	34821										
GRIP1	0	genome.wustl.edu	37	chr12	66909438	66909438	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctatcagcagtgctgcttCttgtccacattgtttaagaa	7	9	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	66909438	66909438	C	G	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	missense	c.685	p.E229Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	214	0	0	129	16	11.03	-	-	-	G	66909438	C	G	66909438	3	3	312	1	0	0	0	0	1	0	0	0	6838	922	32	2	2617	2	GRIP1	12	66909438	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9044202	66909438	66942457	443	34822										
GRIP1	0	genome.wustl.edu	37	chr12	66932879	66932879	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaccggtggaagctcgtactCtacttcaagaaccactcttt	8	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	66932879	66932879	C	T	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	missense	c.397	p.E133K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	272	0	0	135	24	15.09	-	-	-	T	66932879	C	T	66932879	3	4	312	1	0	0	0	0	1	0	0	0	6838	922	32	2	2917	2	GRIP1	12	66932879	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	23441	66932879	66919016	444	34823										
TBC1D15	0	genome.wustl.edu	37	chr12	72274279	72274279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagttgtagaatggactcagGccccaaaagaaagaggtcat	11	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	72274279	72274279	G	T	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	missense	c.235	p.A79S	0.981	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	90	0	0	32	10	23.81	-	-	-	T	72274279	G	T	72274279	3	4	312	1	0	0	0	0	1	0	0	0	15696	1203	42	4	373	4	TBC1D15	12	72274279	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5341400	72274279	61577616	445	34824										
LRRIQ1	0	genome.wustl.edu	37	chr12	85439870	85439870	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccactcctgattttgttcctGagcctagtcctcatgacttg	7	13	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	85439870	85439870	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	0.234	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	170	0	0	71	9	11.25	-	-	-	A	85439870	G	A	85439870	3	1	312	1	0	0	0	0	1	0	0	0	9095	1291	45	2	423	2	LRRIQ1	12	85439870	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	13165591	85439870	48412025	446	34825										
TMTC3	0	genome.wustl.edu	37	chr12	88570062	88570062	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagaactttgagagagctttGaaatacttcttacaggctac	8	7	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	88570062	88570062	G	C	SNP	TMTC3	ENST00000266712	human	ensembl	69_37n	1	known	missense	c.1398	p.L466F	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	213	0	0	102	18	15	-	-	-	C	88570062	G	C	88570062	3	2	312	1	0	0	0	0	1	0	0	0	16357	1281	45	2	1432	2	TMTC3	12	88570062	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3130192	88570062	45281833	447	34826										
ATP2B1	0	genome.wustl.edu	37	chr12	90010690	90010690	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctcctgctggaaaatctctGaatgcaagacatatggttct	8	9	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	90010690	90010690	G	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.1956	p.F652L	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	380	0	0	242	31	11.31	-	-	-	C	90010690	G	C	90010690	3	2	312	1	0	0	0	0	1	0	0	0	1143	1281	45	2	1904	2	ATP2B1	12	90010690	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1440628	90010690	43841205	448	34827										
PLXNC1	0	genome.wustl.edu	37	chr12	94697788	94697788	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttaatgaagaagtggccttGacagaaatttacaaatacat	7	5	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	94697788	94697788	G	C	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	missense	c.4563	p.L1521F	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	82	0	0	43	7	14	-	-	-	C	94697788	G	C	94697788	3	2	312	1	0	0	0	0	1	0	0	0	12200	1281	45	2	4681	2	PLXNC1	12	94697788	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4687098	94697788	39154107	449	34828										
CCDC41	0	genome.wustl.edu	37	chr12	94727325	94727325	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcattcttgttttaatctctCcaccatttccttcagcattt	3	12	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	94727325	94727325	C	G	SNP	CCDC41	ENST00000339839	human	ensembl	69_37n	-1	known	missense	c.1510	p.E504Q	1.000	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588	456	0	0	269	32	10.63	-	-	-	G	94727325	C	G	94727325	3	3	312	1	0	0	0	0	1	0	0	0	2839	864	30	2	615	2	CCDC41	12	94727325	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	29537	94727325	39124570	450	34829										
NEDD1	0	genome.wustl.edu	37	chr12	97339470	97339470	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttcttcattctttattttaGatccaaagatagcatcttct	3	8	5	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	97339470	97339470	G	C	SNP	NEDD1	ENST00000557644	human	ensembl	69_37n	1	known	splice_site	c.1676-1	e13-1	1.000	-	-	-	no_errors	NEDD1	HGNC	ENSG00000139350	120	0	0	57	10	14.93	-	-	-	C	97339470	G	C	97339470	5	2	312	1	0	0	0	0	0	0	1	0	10381	956	33	2	1725	2	NEDD1	12	97339470	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2612145	97339470	36512425	451	34830										
APAF1	0	genome.wustl.edu	37	chr12	99043418	99043418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatggcaggctgtgggaagtCtgtattagctgcagaagctg	15	6	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	99043418	99043418	C	G	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.482	p.S161C	1.000	pfam_NB-ARC,pirsf_Apoptotic_pept-activating_1,prints_Disease_R	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	244	0	0	132	16	10.74	-	-	-	G	99043418	C	G	99043418	3	3	312	1	0	0	0	0	1	0	0	0	756	913	32	2	492	2	APAF1	12	99043418	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1703948	99043418	34808477	452	34831										
ACACB	0	genome.wustl.edu	37	chr12	109684081	109684081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgacatcacctttcgcattgGatcctttggccctggagagg	11	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	109684081	109684081	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.5399	p.G1800V	1.000	pfam_Carboxyl_trans	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	71	0	0	34	13	27.66	-	-	-	T	109684081	G	T	109684081	3	4	312	1	0	0	0	0	1	0	0	0	107	1174	41	2	5549	2	ACACB	12	109684081	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	10640663	109684081	24167814	453	34832										
IFT81	0	genome.wustl.edu	37	chr12	110581255	110581255	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taactgaaaaatttcctaaaGaattagaaaataagaaaaag	5	3	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	110581255	110581255	G	C	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.850	p.E284Q	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	29	0	0	20	8	28.57	-	-	-	C	110581255	G	C	110581255	3	2	312	1	0	0	0	0	1	0	0	0	7619	943	33	2	880	2	IFT81	12	110581255	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	897174	110581255	23270640	454	34833										
SLC24A6	0	genome.wustl.edu	37	chr12	113748067	113748067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcctggggggctggctgtcaGatgtggcaaaaaaggtcact	16	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	113748067	113748067	G	C	SNP	SLC24A6	ENST00000202831	human	ensembl	69_37n	-1	known	missense	c.1229	p.S410C	0.900	NULL	pfam_NaCa_Exmemb	-	no_errors	SLC24A6	HGNC	ENSG00000089060	56	0	0	41	10	19.61	-	-	-	C	113748067	G	C	113748067	3	2	312	1	0	0	0	0	1	0	0	0	14559	942	33	2	545	2	SLC24A6	12	113748067	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3166812	113748067	20103828	455	34834										
MED13L	0	genome.wustl.edu	37	chr12	116446775	116446775	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgaaatggtattaagggtctCttttgcagcttgtctccttt	9	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	116446775	116446775	C	G	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.1443	p.K481N	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	838	0	0	525	63	10.68	-	-	-	G	116446775	C	G	116446775	3	3	312	1	0	0	0	0	1	0	0	0	9502	912	32	2	5277	2	MED13L	12	116446775	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2698708	116446775	17405120	456	34835										
GCN1L1	0	genome.wustl.edu	37	chr12	120583088	120583088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggcacagggtccaaaagcGatgctttcaggccaggcgtc	13	12	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	120583088	120583088	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.4994	p.S1665L	1.000	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	42	0	0	20	3	13.04	-	-	-	A	120583088	G	A	120583088	3	1	312	1	0	0	0	0	1	0	0	0	6349	1059	37	1	3101	1	GCN1L1	12	120583088	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4136313	120583088	13268807	457	34836										
ANAPC5	0	genome.wustl.edu	37	chr12	121746349	121746349	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgcagctgccggaagagcatCgcacaccggttcctctcctg	11	15	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	121746349	121746349	C	T	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	silent	c.2202	p.A734	0.346	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	84	0	0	61	22	26.51	-	-	-	T	121746349	C	T	121746349	2	4	312	1	0	0	0	0	0	0	0	1	605	871	31	1		1	ANAPC5	12	121746349	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1163261	121746349	12105546	458	34837										
HPD	0	genome.wustl.edu	37	chr12	122294313	122294313	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caccaggtgatcgcccatctCtgtggccggcagggagagga	15	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	122294313	122294313	C	T	SNP	HPD	ENST00000289004	human	ensembl	69_37n	-1	known	splice_site	c.242-1	e6-1	1.000	-	-	-	no_errors	HPD	HGNC	ENSG00000158104	241	0	0	146	20	12.05	-	-	-	T	122294313	C	T	122294313	5	4	312	1	0	0	0	0	0	0	1	0	7383	927	32	2	976	2	HPD	12	122294313	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	547964	122294313	11557582	459	34838										
WDR66	0	genome.wustl.edu	37	chr12	122441575	122441575	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taggttcagaaatttgccttGaagaagaacttccagacgaa	9	7	1	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	122441575	122441575	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.3355	p.E1119K	0.943	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	417	0	0	179	64	26.34	-	-	-	A	122441575	G	A	122441575	3	1	312	1	0	0	0	0	1	0	0	0	17414	1291	45	2	3496	2	WDR66	12	122441575	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	147262	122441575	11410320	460	34839										
DIABLO	0	genome.wustl.edu	37	chr12	122693103	122693103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgaatgtgattcctggcgGttatagaggcctgatctgcg	14	8	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	122693103	122693103	G	T	SNP	DIABLO	ENST00000443649	human	ensembl	69_37n	-1	known	missense	c.545	p.T182N	0.107	pfam_Smac_DIABLO,superfamily_Smac_DIABLO-like	pfam_Smac_DIABLO,superfamily_Smac_DIABLO-like	-	no_errors	DIABLO	HGNC	ENSG00000184047	161	0	0	87	19	17.92	-	-	-	T	122693103	G	T	122693103	3	4	312	1	0	0	0	0	1	0	0	0	4553	1261	44	4	178	4	DIABLO	12	122693103	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	251528	122693103	11158792	461	34840										
CLIP1	0	genome.wustl.edu	37	chr12	122817576	122817576	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgttcatttttgtcagctgaGaagagttatctcctgacatc	8	9	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	122817576	122817576	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.2825	p.S942F	1.000	superfamily_Prefoldin	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	588	0	0	278	77	21.69	-	-	-	A	122817576	G	A	122817576	3	1	312	1	0	0	0	0	1	0	0	0	3562	942	33	2	1539	2	CLIP1	12	122817576	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	124473	122817576	11034319	462	34841										
SCARB1	0	genome.wustl.edu	37	chr12	125267281	125267281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggagctgatgtcatcaggGattcagaataggcctgaatg	14	6	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	125267281	125267281	G	A	SNP	SCARB1	ENST00000261693	human	ensembl	69_37n	-1	known	missense	c.1478	p.S493F	0.994	NULL	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	170	0	0	99	11	10	-	-	-	A	125267281	G	A	125267281	3	1	312	1	0	0	0	0	1	0	0	0	13968	1174	41	2	179	2	SCARB1	12	125267281	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2449705	125267281	8584614	463	34842										
TMEM132B	0	genome.wustl.edu	37	chr12	126137037	126137037	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgagaagacggtgattgtCctggatgaccgagtcaccat	13	9	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	12	126137037	126137037	C	G	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	silent	c.1950	p.V650	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	91	0	0	55	7	11.29	-	-	-	G	126137037	C	G	126137037	2	3	312	1	0	0	0	0	0	0	0	1	16141	842	30	2		2	TMEM132B	12	126137037	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	869756	126137037	7714858	464	34843										
FRY	0	genome.wustl.edu	37	chr13	32786467	32786467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atacagtggttgctggccagGaaaatttcccagatgctgag	12	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	32786467	32786467	G	A	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.4630	p.E1544K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	223	0	0	105	55	34.38	-	-	-	A	32786467	G	A	32786467	3	1	312	1	0	0	0	0	1	0	0	0	6112	1175	41	2	4768	2	FRY	13	32786467	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		32786467	82383411	465	34844										
AKAP11	0	genome.wustl.edu	37	chr13	42871200	42871200	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcaggatttagctgcagtttCtttggaacttccagatattc	8	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	42871200	42871200	C	G	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.233	p.S78C	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	140	0	0	78	15	16.13	-	-	-	G	42871200	C	G	42871200	3	3	312	1	0	0	0	0	1	0	0	0	447	913	32	2	247	2	AKAP11	13	42871200	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10084733	42871200	72298678	466	34845										
AKAP11	0	genome.wustl.edu	37	chr13	42874661	42874661	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgacatcatctgttttgcaGatggcatttgatgagctgag	11	6	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	42874661	42874661	G	C	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.1779	p.Q593H	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	119	0	0	44	15	25.42	-	-	-	C	42874661	G	C	42874661	3	2	312	1	0	0	0	0	1	0	0	0	447	933	33	2	1801	2	AKAP11	13	42874661	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3461	42874661	72295217	467	34846										
AKAP11	0	genome.wustl.edu	37	chr13	42875998	42875998	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaaatctgacttgaaggaatCtgctaaggatcaaccactga	9	8	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	42875998	42875998	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.3116	p.S1039F	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	169	0	0	85	12	12.37	-	-	-	T	42875998	C	T	42875998	3	4	312	1	0	0	0	0	1	0	0	0	447	913	32	2	3138	2	AKAP11	13	42875998	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1337	42875998	72293880	468	34847										
COG3	0	genome.wustl.edu	37	chr13	46055380	46055380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaagtcggaacttgttgatCtggctgaaaacattcaacaa	9	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	46055380	46055380	C	G	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	missense	c.565	p.L189V	1.000	pfam_COG_su3	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	106	0	0	41	5	10.87	-	-	-	G	46055380	C	G	46055380	3	3	312	1	0	0	0	0	1	0	0	0	3689	912	32	2	583	2	COG3	13	46055380	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3179382	46055380	69114498	469	34848										
DHRS12	0	genome.wustl.edu	37	chr13	52348157	52348157	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgaaccaacattcctcctGaggagacggttatctgcaat	8	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	52348157	52348157	G	A	SNP	DHRS12	ENST00000444610	human	ensembl	69_37n	-1	known	missense	c.524	p.S175L	0.919	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DHRS12	HGNC	ENSG00000102796	226	0	0	133	18	11.92	-	-	-	A	52348157	G	A	52348157	3	1	312	1	0	0	0	0	1	0	0	0	4524	1294	45	2	624	2	DHRS12	13	52348157	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6292777	52348157	62821721	470	34849										
MYCBP2	0	genome.wustl.edu	37	chr13	77672548	77672548	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagagggagctctattttcaGatccaggggaatctgtagaa	13	6	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	77672548	77672548	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.8741	p.S2914F	0.356	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	109	0	0	69	8	10.39	-	-	-	A	77672548	G	A	77672548	3	1	312	1	0	0	0	0	1	0	0	0	10090	942	33	2	5407	2	MYCBP2	13	77672548	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	25324391	77672548	37497330	471	34850										
MYCBP2	0	genome.wustl.edu	37	chr13	77673130	77673130	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggctggtttagaagatgttGagatgtttcctcgatcacct	11	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	77673130	77673130	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	nonsense	c.8159	p.S2720*	0.883	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	84	0	0	38	9	19.15	-	-	-	C	77673130	G	C	77673130	4	2	312	1	0	0	0	0	0	1	0	0	10090	1294	45	2	5989	2	MYCBP2	13	77673130	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	582	77673130	37496748	472	34851										
NDFIP2	0	genome.wustl.edu	37	chr13	80055606	80055606	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctctctcggaagccggatCccgagccgggcaggatggat	14	14	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	80055606	80055606	C	A	SNP	NDFIP2	ENST00000218652	human	ensembl	69_37n	1	known	missense	c.268	p.P90T	0.295	NULL	pfam_NEDD4/BSD2	-	no_errors	NDFIP2	HGNC	ENSG00000102471	17	0	0	10	5	33.33	-	-	-	A	80055606	C	A	80055606	3	1	312	1	0	0	0	0	1	0	0	0	10318	855	30	2	270	2	NDFIP2	13	80055606	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2382476	80055606	35114272	473	34852										
PCCA	0	genome.wustl.edu	37	chr13	101020767	101020767	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catagccaactgggagctctCagtaaaattgcatgataaag	9	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	101020767	101020767	C	G	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	1	known	nonsense	c.1685	p.S562*	0.224	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	360	0	0	190	25	11.63	-	-	-	G	101020767	C	G	101020767	4	3	312	1	0	0	0	0	0	1	0	0	11577	838	29	2	1759	2	PCCA	13	101020767	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	20965161	101020767	14149111	474	34853										
NALCN	0	genome.wustl.edu	37	chr13	101733934	101733934	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagcgacgtcaccaggagatCgtatcggtttcttctgcttt	10	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	101733934	101733934	C	G	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3829	p.D1277H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	171	0	0	96	11	10.28	-	-	-	G	101733934	C	G	101733934	3	3	312	1	0	0	0	0	1	0	0	0	10220	884	31	3	1431	3	NALCN	13	101733934	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	713167	101733934	13435944	475	34854										
F10	0	genome.wustl.edu	37	chr13	113803435	113803435	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccacgctgatgacgcagaaGacggggattgtgagcggctt	15	9	0	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	113803435	113803435	G	A	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	silent	c.1071	p.K357	0.002	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	34	0	0	23	9	28.12	-	-	-	A	113803435	G	A	113803435	2	1	312	1	0	0	0	0	0	0	0	1	5373	933	33	2		2	F10	13	113803435	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12069501	113803435	1366443	476	34855										
RASA3	0	genome.wustl.edu	37	chr13	114766363	114766363	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaccatctcttcttaaaattCttcatcccaaagcgcttccg	3	14	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	13	114766363	114766363	C	T	SNP	RASA3	ENST00000334062	human	ensembl	69_37n	-1	known	silent	c.1788	p.K596	1.000	pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,prints_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASA3	HGNC	ENSG00000185989	200	0	0	98	17	14.78	-	-	-	T	114766363	C	T	114766363	2	4	312	1	0	0	0	0	0	0	0	1	13145	912	32	2		2	RASA3	13	114766363	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	962928	114766363	403515	477	34856										
TEP1	0	genome.wustl.edu	37	chr14	20848488	20848488	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagcgaggcttggtggcaaaGaggtgagtccaggggctggt	19	7	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	20848488	20848488	G	C	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.4909	p.L1637V	0.091	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	407	0	0	228	31	11.97	-	-	-	C	20848488	G	C	20848488	3	2	312	1	0	0	0	0	1	0	0	0	15854	942	33	2	3062	2	TEP1	14	20848488	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		20848488	86501052	478	34857										
RNASE6	0	genome.wustl.edu	37	chr14	21250297	21250297	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttggttcctgtacacttaGatagtattctctaaggcatc	8	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	21250297	21250297	G	C	SNP	RNASE6	ENST00000304677	human	ensembl	69_37n	1	known	missense	c.439	p.D147H	0.998	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE6	HGNC	ENSG00000169413	87	0	0	54	7	11.48	-	-	-	C	21250297	G	C	21250297	3	2	312	1	0	0	0	0	1	0	0	0	13493	942	33	2	441	2	RNASE6	14	21250297	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	401809	21250297	86099243	479	34858										
HNRNPC	0	genome.wustl.edu	37	chr14	21702335	21702335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagcgaggatctgtcttgttGgtaacgttgctggccatcgt	14	8	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	21702335	21702335	G	A	SNP	HNRNPC	ENST00000320084	human	ensembl	69_37n	-1	known	silent	c.18	p.T6	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	313	0	0	197	32	13.97	-	-	-	A	21702335	G	A	21702335	2	1	312	1	0	0	0	0	0	0	0	1	7313	1335	47	4		4	HNRNPC	14	21702335	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	452038	21702335	85647205	480	34859										
SUPT16H	0	genome.wustl.edu	37	chr14	21831012	21831012	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacgggcattattacagtctCatatttcttatcgatgtaga	7	8	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	21831012	21831012	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.1606	p.E536K	1.000	pfam_FACT_Spt16p	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	216	0	0	132	36	21.43	-	-	-	T	21831012	C	T	21831012	3	4	312	1	0	0	0	0	1	0	0	0	15487	835	29	2	1589	2	SUPT16H	14	21831012	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	128677	21831012	85518528	481	34860										
SUPT16H	0	genome.wustl.edu	37	chr14	21833277	21833277	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attgattactagggagccttCacggaattcaattcccatcc	7	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	21833277	21833277	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.1072	p.E358K	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	328	0	0	171	53	23.66	-	-	-	T	21833277	C	T	21833277	3	4	312	1	0	0	0	0	1	0	0	0	15487	835	29	2	2143	2	SUPT16H	14	21833277	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2265	21833277	85516263	482	34861										
CHD8	0	genome.wustl.edu	37	chr14	21876692	21876692	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttttgcccaatcccatctCatcagccaggatgcagttct	7	13	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	21876692	21876692	C	T	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.2509	p.E837K	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	97	0	0	57	8	12.31	-	-	-	T	21876692	C	T	21876692	3	4	312	1	0	0	0	0	1	0	0	0	3360	835	29	2	5340	2	CHD8	14	21876692	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	43415	21876692	85472848	483	34862										
CMTM5	0	genome.wustl.edu	37	chr14	23847569	23847569	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtcctgcaggccctgaccctCatcatcttcatctgcttcac	6	17	6	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	23847569	23847569	C	T	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	1	known	silent	c.138	p.L46	1.000	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	282	0	0	155	21	11.93	-	-	-	T	23847569	C	T	23847569	2	4	312	1	0	0	0	0	0	0	0	1	3616	813	29	2		2	CMTM5	14	23847569	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1970877	23847569	83501971	484	34863										
CMTM5	0	genome.wustl.edu	37	chr14	23847601	23847601	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgcttcacggcctccatctCtgcctacatggccgcggcgc	10	18	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	23847601	23847601	C	T	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	1	known	missense	c.170	p.S57F	1.000	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	353	1	0.28	232	28	10.77	-	-	-	T	23847601	C	T	23847601	3	4	312	1	0	0	0	0	1	0	0	0	3616	913	32	2	176	2	CMTM5	14	23847601	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	32	23847601	83501939	485	34864										
MYH7	0	genome.wustl.edu	37	chr14	23883308	23883308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caggtttttcctgtcctcctCcgtctgggggccagagggta	13	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	23883308	23883308	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.5563	p.E1855K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	112	0	0	70	14	16.67	-	-	-	T	23883308	C	T	23883308	3	4	312	1	0	0	0	0	1	0	0	0	10111	864	30	2	256	2	MYH7	14	23883308	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	35707	23883308	83466232	486	34865										
AP1G2	0	genome.wustl.edu	37	chr14	24035526	24035526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgggctgcaggagcagtttCtccacctctggggccaggtc	14	13	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	24035526	24035526	C	G	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.432	p.E144D	0.997	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	69	0	0	36	5	12.2	-	-	-	G	24035526	C	G	24035526	3	3	312	1	0	0	0	0	1	0	0	0	734	912	32	2	2001	2	AP1G2	14	24035526	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	152218	24035526	83314014	487	34866										
TM9SF1	0	genome.wustl.edu	37	chr14	24680890	24680890	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtttccctcattacctctCttattcttggtcccatactt	3	13	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	24680890	24680890	C	G	SNP	TM9SF1	ENST00000556387	human	ensembl	69_37n	-1	known	missense	c.177	p.K59N	1.000	pfam_Snf7	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	564	0	0	324	42	11.44	-	-	-	G	24680890	C	G	24680890	3	3	312	1	0	0	0	0	1	0	0	0	16072	912	32	2		2	TM9SF1	14	24680890	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	645364	24680890	82668650	488	34867										
AP4S1	0	genome.wustl.edu	37	chr14	31542162	31542162	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	actttgtggaagttttagatGagtatttcagccgagtggta	12	4	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	31542162	31542162	G	T	SNP	AP4S1	ENST00000216366	human	ensembl	69_37n	1	known	nonsense	c.277	p.E93*	0.999	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP4S1	HGNC	ENSG00000100478	393	0	0	198	28	12.33	-	-	-	T	31542162	G	T	31542162	4	4	312	1	0	0	0	0	0	1	0	0	755	1291	45	2	287	2	AP4S1	14	31542162	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6861272	31542162	75807378	489	34868										
HEATR5A	0	genome.wustl.edu	37	chr14	31778176	31778176	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctatcagtgtagacatcctCaggggactttatggtagccc	10	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	31778176	31778176	C	G	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.4636	p.E1546Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	157	0	0	96	11	10.28	-	-	-	G	31778176	C	G	31778176	3	3	312	1	0	0	0	0	1	0	0	0	7082	835	29	2	1518	2	HEATR5A	14	31778176	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	236014	31778176	75571364	490	34869										
BAZ1A	0	genome.wustl.edu	37	chr14	35249434	35249434	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctgggtcatcttcatcttCagtgaccatatcttgatcta	6	11	7	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	35249434	35249434	C	T	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.2194	p.E732K	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	422	1	0.24	263	35	11.74	-	-	-	T	35249434	C	T	35249434	3	4	312	1	0	0	0	0	1	0	0	0	1333	835	29	2	2520	2	BAZ1A	14	35249434	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3471258	35249434	72100106	491	34870										
BAZ1A	0	genome.wustl.edu	37	chr14	35343775	35343775	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgcaggtccgcgggcggcttCtgtctcacaaacggctttcg	13	14	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	35343775	35343775	C	T	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	silent	c.36	p.Q12	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	37	0	0	32	10	23.81	-	-	-	T	35343775	C	T	35343775	2	4	312	1	0	0	0	0	0	0	0	1	1333	912	32	2		2	BAZ1A	14	35343775	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	94341	35343775	72005765	492	34871										
NFKBIA	0	genome.wustl.edu	37	chr14	35871602	35871602	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggagttcacagactcacctCgtcctctgtgaactccgtga	9	13	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	35871602	35871602	C	A	SNP	NFKBIA	ENST00000216797	human	ensembl	69_37n	-1	known	nonsense	c.904	p.E302*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIA	HGNC	ENSG00000100906	104	0	0	66	9	12	-	-	-	A	35871602	C	A	35871602	4	1	312	1	0	0	0	0	0	1	0	0	10449	893	31	3	57	3	NFKBIA	14	35871602	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	527827	35871602	71477938	493	34872										
NFKBIA	0	genome.wustl.edu	37	chr14	35872475	35872475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggtgtaggggggtatttcctCgaaagtctcggagctcagga	16	7	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	35872475	35872475	C	T	SNP	NFKBIA	ENST00000216797	human	ensembl	69_37n	-1	known	missense	c.428	p.R143Q	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIA	HGNC	ENSG00000100906	155	0	0	80	22	21.57	-	-	-	T	35872475	C	T	35872475	3	4	312	1	0	0	0	0	1	0	0	0	10449	884	31	1	541	1	NFKBIA	14	35872475	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	873	35872475	71477065	494	34873										
KLHDC2	0	genome.wustl.edu	37	chr14	50249116	50249116	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acacagcttgtgccagcgatGaaggagaagtaattgttttt	11	6	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	50249116	50249116	G	T	SNP	KLHDC2	ENST00000298307	human	ensembl	69_37n	1	known	nonsense	c.985	p.E329*	1.000	NULL	pfam_Kelch_2	-	no_errors	KLHDC2	HGNC	ENSG00000165516	400	0	0	221	27	10.89	-	-	-	T	50249116	G	T	50249116	4	4	312	1	0	0	0	0	0	1	0	0	8409	1291	45	2	1027	2	KLHDC2	14	50249116	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	14376641	50249116	57100424	495	34874										
FRMD6	0	genome.wustl.edu	37	chr14	52192580	52192580	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtggccagagtactgattctCttccacaggtattaaaggaa	10	8	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	52192580	52192580	C	G	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.1576	p.L526V	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	236	0	0	142	18	11.25	-	-	-	G	52192580	C	G	52192580	3	3	312	1	0	0	0	0	1	0	0	0	6103	913	32	2	1598	2	FRMD6	14	52192580	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1943464	52192580	55156960	496	34875										
FBXO34	0	genome.wustl.edu	37	chr14	55818482	55818482	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaatctttgtgcattagtatCactgtgtccaaggtagacaa	9	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	55818482	55818482	C	T	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	silent	c.1374	p.I458	0.979	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	115	0	0	75	10	11.76	-	-	-	T	55818482	C	T	55818482	2	4	312	1	0	0	0	0	0	0	0	1	5790	816	29	2		2	FBXO34	14	55818482	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3625902	55818482	51531058	497	34876										
SYNE2	0	genome.wustl.edu	37	chr14	64599109	64599109	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taacagaagttaaaatactaGaagaaaagtcacgccaatgt	7	6	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	64599109	64599109	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.14467	p.E4823Q	0.997	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	189	0	0	102	15	12.82	-	-	-	C	64599109	G	C	64599109	3	2	312	1	0	0	0	0	1	0	0	0	15538	943	33	2	14769	2	SYNE2	14	64599109	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8780627	64599109	42750431	498	34877										
SLC8A3	0	genome.wustl.edu	37	chr14	70634612	70634612	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccaatgatgatgaacatgttGaaggctgcactccctacaat	8	10	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	70634612	70634612	G	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	silent	c.528	p.F176	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	103	0	0	73	13	15.12	-	-	-	A	70634612	G	A	70634612	2	1	312	1	0	0	0	0	0	0	0	1	14797	1281	45	2		2	SLC8A3	14	70634612	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6035503	70634612	36714928	499	34878										
NEK9	0	genome.wustl.edu	37	chr14	75576448	75576448	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagtgggtattccctgcacaGacctgccgggcactacagcc	11	14	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	75576448	75576448	G	A	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	silent	c.1122	p.V374	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	98	0	0	61	8	11.59	-	-	-	A	75576448	G	A	75576448	2	1	312	1	0	0	0	0	0	0	0	1	10403	929	33	2		2	NEK9	14	75576448	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4941836	75576448	31773092	500	34879										
FLVCR2	0	genome.wustl.edu	37	chr14	76045470	76045470	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctgtccaccccagcagttCggcccaccccagtgccttag	8	19	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	76045470	76045470	C	G	SNP	FLVCR2	ENST00000238667	human	ensembl	69_37n	1	known	missense	c.155	p.S52W	0.078	superfamily_Trimer_LpxA-like	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Trimer_LpxA-like,pfscan_MFS_dom	-	no_errors	FLVCR2	HGNC	ENSG00000119686	262	0	0	180	21	10.45	-	-	-	G	76045470	C	G	76045470	3	3	312	1	0	0	0	0	1	0	0	0	5992	893	31	3	157	3	FLVCR2	14	76045470	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	469022	76045470	31304070	501	34880										
TMEM63C	0	genome.wustl.edu	37	chr14	77719719	77719719	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctccacgcccacctccctCgtgagtcctgagtcccaggg	9	19	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	77719719	77719719	C	T	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	silent	c.2220	p.L740	0.995	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	79	0	0	51	9	15	-	-	-	T	77719719	C	T	77719719	2	4	312	1	0	0	0	0	0	0	0	1	16287	898	31	1		1	TMEM63C	14	77719719	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1674249	77719719	29629821	502	34881										
EML5	0	genome.wustl.edu	37	chr14	89210436	89210436	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcccaagaaatatcaaatatCtgtaaacaaatcagattcat	3	8	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	89210436	89210436	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	splice_site	c.457-1	e4-1	1.000	-	-	-	no_errors	EML5	HGNC	ENSG00000165521	127	0	0	75	14	15.73	-	-	-	T	89210436	C	T	89210436	5	4	312	1	0	0	0	0	0	0	1	0	5137	927	32	2	5637	2	EML5	14	89210436	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11490717	89210436	18139104	503	34882										
C14orf102	0	genome.wustl.edu	37	chr14	90745473	90745473	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctttctttatttcctaagGaaacctgaggtgagggggag	12	6	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	90745473	90745473	G	C	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.3302	p.S1101C	1.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	301	0	0	150	20	11.7	-	-	-	C	90745473	G	C	90745473	3	2	312	1	0	0	0	0	1	0	0	0	1747	1174	41	2	200	2	C14orf102	14	90745473	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1535037	90745473	16604067	504	34883										
C14orf102	0	genome.wustl.edu	37	chr14	90764656	90764656	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgctggtgcatccacgccttCcagcctcgggctcccttctc	9	18	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	90764656	90764656	C	T	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	nonsense	c.1614	p.W538*	1.000	pfam_NRDE-2	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	75	0	0	48	7	12.73	-	-	-	T	90764656	C	T	90764656	4	4	312	1	0	0	0	0	0	1	0	0	1747	856	30	2	1908	2	C14orf102	14	90764656	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	19183	90764656	16584884	505	34884										
BTBD7	0	genome.wustl.edu	37	chr14	93709172	93709172	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggtctgcaagcagcatttGagaagtcatagaaatccgga	11	7	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	93709172	93709172	G	C	SNP	BTBD7	ENST00000334746	human	ensembl	69_37n	-1	known	nonsense	c.2846	p.S949*	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114	478	0	0	270	35	11.48	-	-	-	C	93709172	G	C	93709172	4	2	312	1	0	0	0	0	0	1	0	0	1555	1294	45	2	556	2	BTBD7	14	93709172	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2944516	93709172	13640368	506	34885										
OTUB2	0	genome.wustl.edu	37	chr14	94505335	94505335	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcaaaaggttcaccgccatCcgcaagaccaaaggggatgg	12	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	94505335	94505335	C	T	SNP	OTUB2	ENST00000203664	human	ensembl	69_37n	1	known	silent	c.126	p.I42	0.997	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB2	HGNC	ENSG00000089723	144	0	0	77	11	12.5	-	-	-	T	94505335	C	T	94505335	2	4	312	1	0	0	0	0	0	0	0	1	11385	845	30	2		2	OTUB2	14	94505335	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	796163	94505335	12844205	507	34886										
ASPG	0	genome.wustl.edu	37	chr14	104575607	104575607	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgcgggaagccggggcctCcctgtccacccaggagctgg	16	15	0	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	104575607	104575607	C	A	SNP	ASPG	ENST00000455920	human	ensembl	69_37n	1	known	missense	c.1475	p.S492Y	0.992	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Asparaginase/glutaminase,pfam_Ankyrin_rpt,superfamily_Asparaginase/glutaminase,superfamily_Ankyrin_rpt-contain_dom,smart_Asparaginase/glutaminase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Asparaginase/glutaminase,prints_Ankyrin_rpt,tigrfam_AsnASEI	-	no_errors	ASPG	HGNC	ENSG00000166183	107	0	0	51	8	13.56	-	-	-	A	104575607	C	A	104575607	3	1	312	1	0	0	0	0	1	0	0	0	1056	855	30	2	1525	2	ASPG	14	104575607	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10070272	104575607	2773933	508	34887										
AHNAK2	0	genome.wustl.edu	37	chr14	105416670	105416670	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcggaaggggactgaatgctGaggtcagtggtcttcaggtc	17	7	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	105416670	105416670	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.5118	p.L1706	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	208	0	0	150	24	13.71	-	-	-	A	105416670	G	A	105416670	2	1	312	1	0	0	0	0	0	0	0	1	415	1277	45	2		2	AHNAK2	14	105416670	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	841063	105416670	1932870	509	34888										
PACS2	0	genome.wustl.edu	37	chr14	105834825	105834825	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaggacgactttgacgtgggGaagccgaagaagcagcggag	18	7	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	14	105834825	105834825	G	A	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	silent	c.690	p.G230	0.998	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	253	0	0	131	17	11.49	-	-	-	A	105834825	G	A	105834825	2	1	312	1	0	0	0	0	0	0	0	1	11446	1161	41	2		2	PACS2	14	105834825	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	418155	105834825	1514715	510	34889										
RYR3	0	genome.wustl.edu	37	chr15	33945019	33945019	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acctggagatcggctgtctcGtggatctggccatgggcatg	15	10	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	33945019	33945019	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.4243	p.V1415L	0.079	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	214	0	0	98	16	14.04	-	-	-	C	33945019	G	C	33945019	3	2	312	1	0	0	0	0	1	0	0	0	13856	1145	40	3	4369	3	RYR3	15	33945019	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		33945019	68586373	511	34890										
SPRED1	0	genome.wustl.edu	37	chr15	38614607	38614607	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagctatagaggatatttctCaaggtaggtattcttgacta	10	5	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	38614607	38614607	C	G	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.373	p.Q125E	1.000	NULL	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	306	0	0	110	21	16.03	-	-	-	G	38614607	C	G	38614607	3	3	312	1	0	0	0	0	1	0	0	0	15183	827	29	2	383	2	SPRED1	15	38614607	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4669588	38614607	63916785	512	34891										
C15orf56	0	genome.wustl.edu	37	chr15	40544625	40544625	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gccaagcaggtggagagaaaGagttgagcagcacggcgccc	16	10	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	40544625	40544625	G	C	SNP	C15orf56	ENST00000319503	human	ensembl	69_37n	-1	known	missense	c.347	p.S116C	0.000	NULL	NULL	-	no_errors	C15orf56	HGNC	ENSG00000176753	29	0	0	18	4	18.18	-	-	-	C	40544625	G	C	40544625	3	2	312	1	0	0	0	0	1	0	0	0	1816	942	33	2	142	2	C15orf56	15	40544625	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1930018	40544625	61986767	513	34892										
TP53BP1	0	genome.wustl.edu	37	chr15	43748887	43748887	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acacactagaaagtgcctcaGatcgagtagctggtgacgga	12	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	43748887	43748887	G	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.1919	p.S640F	0.952	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	149	0	0	59	9	13.24	-	-	-	A	43748887	G	A	43748887	3	1	312	1	0	0	0	0	1	0	0	0	16479	942	33	2	4082	2	TP53BP1	15	43748887	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3204262	43748887	58782505	514	34893										
PDIA3	0	genome.wustl.edu	37	chr15	44053674	44053674	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggaccagcttcagtgcctctCaggactgaggaagaatttaa	11	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	44053674	44053674	C	G	SNP	PDIA3	ENST00000300289	human	ensembl	69_37n	1	known	silent	c.417	p.L139	0.896	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA3	HGNC	ENSG00000167004	74	0	0	33	12	26.67	-	-	-	G	44053674	C	G	44053674	2	3	312	1	0	0	0	0	0	0	0	1	11742	813	29	2		2	PDIA3	15	44053674	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	304787	44053674	58477718	515	34894										
PIGB	0	genome.wustl.edu	37	chr15	55643018	55643018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgaggtactcttgatgtcatGagtcatattcaaaaagtttg	9	6	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	55643018	55643018	G	C	SNP	PIGB	ENST00000164305	human	ensembl	69_37n	1	known	missense	c.1245	p.M415I	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943	257	0	0	103	22	17.6	-	-	-	C	55643018	G	C	55643018	3	2	312	1	0	0	0	0	1	0	0	0	11959	1290	45	2	1283	2	PIGB	15	55643018	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	11589344	55643018	46888374	516	34895										
ULK3	0	genome.wustl.edu	37	chr15	75133824	75133824	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atccaggtgagagatattccGttcatgcaggaattgcaggg	13	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	75133824	75133824	G	C	SNP	ULK3	ENST00000440863	human	ensembl	69_37n	-1	known	missense	c.391	p.R131G	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIT,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_MIT,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK3	HGNC	ENSG00000140474	259	0	0	87	16	15.53	-	-	-	C	75133824	G	C	75133824	3	2	312	1	0	0	0	0	1	0	0	0	17074	1144	40	3	1079	3	ULK3	15	75133824	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	19490806	75133824	27397568	517	34896										
CIB2	0	genome.wustl.edu	37	chr15	78401629	78401629	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctcggggagccgactcgcaGagcacggaaaacatgtccac	12	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	78401629	78401629	G	A	SNP	CIB2	ENST00000557917	human	ensembl	69_37n	-1	known	missense	c.182	p.S61F	1.000	NULL	NULL	-	no_errors	CIB2	HGNC	ENSG00000136425	237	0	0	91	17	15.74	-	-	-	A	78401629	G	A	78401629	3	1	312	1	0	0	0	0	1	0	0	0	3450	929	33	2	281	2	CIB2	15	78401629	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3267805	78401629	24129763	518	34897										
RASGRF1	0	genome.wustl.edu	37	chr15	79339279	79339279	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcagcatggggtgaccggatGtagtcctggatgatggtctt	15	7	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	79339279	79339279	G	T	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	nonsense	c.687	p.Y229*	1.000	superfamily_DH-domain,pfscan_IQ_motif_EF-hand-BS	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	128	0	0	35	18	33.96	-	-	-	T	79339279	G	T	79339279	4	4	312	1	0	0	0	0	0	1	0	0	13155	1372	48	4	3230	4	RASGRF1	15	79339279	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	937650	79339279	23192113	519	34898										
FAH	0	genome.wustl.edu	37	chr15	80467429	80467429	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atcaacctctctgttaacctGaaaggtatgttgtaggggga	11	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	80467429	80467429	G	A	SNP	FAH	ENST00000561353	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	0.915	superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAH	HGNC	ENSG00000103876	144	1	0.69	62	20	24.39	-	-	-	A	80467429	G	A	80467429	3	1	312	1	0	0	0	0	1	0	0	0	5411	1277	45	2	947	2	FAH	15	80467429	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1128150	80467429	22063963	520	34899										
IL16	0	genome.wustl.edu	37	chr15	81572015	81572015	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgagctccagcacttgtatCaccaaggacagcagctcctt	8	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	81572015	81572015	C	T	SNP	IL16	ENST00000560115	human	ensembl	69_37n	1	known	missense	c.130	p.H44Y	0.020	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IL16	HGNC	ENSG00000172349	127	0	0	45	14	23.33	-	-	-	T	81572015	C	T	81572015	3	4	312	1	0	0	0	0	1	0	0	0	7687	816	29	2	1007	2	IL16	15	81572015	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1104586	81572015	20959377	521	34900										
ZNF710	0	genome.wustl.edu	37	chr15	90610660	90610660	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtgagaagcacacccggcgGaagacgcggccacctgtgcg	15	13	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	90610660	90610660	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	silent	c.291	p.R97	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	129	0	0	48	9	15.79	-	-	-	A	90610660	G	A	90610660	2	1	312	1	0	0	0	0	0	0	0	1	18211	1161	41	2		2	ZNF710	15	90610660	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	9038645	90610660	11920732	522	34901										
VPS33B	0	genome.wustl.edu	37	chr15	91542265	91542265	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgtttgtgactgctgtcgtCaggaaaatgaacctgtagcc	11	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	91542265	91542265	C	G	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	silent	c.1794	p.L598	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	145	0	0	71	13	15.48	-	-	-	G	91542265	C	G	91542265	2	3	312	1	0	0	0	0	0	0	0	1	17299	813	29	2		2	VPS33B	15	91542265	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	931605	91542265	10989127	523	34902										
MEF2A	0	genome.wustl.edu	37	chr15	100250838	100250838	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctcttgtcttcctttgtaGattattcactgaccagcgct	6	13	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	15	100250838	100250838	G	C	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	splice_site	c.1013-1	e10-1	1.000	-	-	-	no_errors	MEF2A	HGNC	ENSG00000068305	100	0	0	37	6	13.95	-	-	-	C	100250838	G	C	100250838	5	2	312	1	0	0	0	0	0	0	1	0	9526	956	33	2	1185	2	MEF2A	15	100250838	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8708573	100250838	2280554	524	34903										
ITFG3	0	genome.wustl.edu	37	chr16	313755	313755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggctgtagccgttgaaaacgGaactggcaccgacagacagg	14	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	313755	313755	G	A	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	missense	c.1169	p.G390E	0.982	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	106	0	0	61	26	29.89	-	-	-	A	313755	G	A	313755	3	1	312	1	0	0	0	0	1	0	0	0	7925	1174	41	2	1199	2	ITFG3	16	313755	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		313755	90040998	525	34904										
C1QTNF8	0	genome.wustl.edu	37	chr16	1144797	1144797	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctccacaggtccctgtcactCacccgggcatagggtccagg	11	16	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	1144797	1144797	C	G	SNP	C1QTNF8	ENST00000328449	human	ensembl	69_37n	-1	known	silent	c.126	p.V42	0.001	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF8	HGNC	ENSG00000184471	83	0	0	44	8	15.38	-	-	-	G	1144797	C	G	1144797	2	3	312	1	0	0	0	0	0	0	0	1	1988	813	29	2		2	C1QTNF8	16	1144797	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	831042	1144797	89209956	526	34905										
CRAMP1L	0	genome.wustl.edu	37	chr16	1724028	1724028	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggtggaggcggccccgctgtCagtgacctgtcccagtgacc	15	14	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	1724028	1724028	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	silent	c.3792	p.V1264	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	73	0	0	78	10	11.36	-	-	-	T	1724028	C	T	1724028	2	4	312	1	0	0	0	0	0	0	0	1	3876	813	29	2		2	CRAMP1L	16	1724028	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	579231	1724028	88630725	527	34906										
NTHL1	0	genome.wustl.edu	37	chr16	2096298	2096298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacctttctcactgtccgagCcctcataggccacacgcagt	7	17	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	2096298	2096298	C	G	SNP	NTHL1	ENST00000219066	human	ensembl	69_37n	-1	known	missense	c.209	p.G70A	0.000	NULL	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	99	0	0	70	8	10.26	-	-	-	G	2096298	C	G	2096298	3	3	312	1	0	0	0	0	1	0	0	0	10771	739	26	4	749	4	NTHL1	16	2096298	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	372270	2096298	88258455	528	34907										
TSC2	0	genome.wustl.edu	37	chr16	2106207	2106207	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctccctgcaggatgatctgtCtgctgtgcgtccggaccgcg	13	14	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	2106207	2106207	C	G	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	missense	c.610	p.L204V	1.000	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	81	0	0	51	8	13.56	-	-	-	G	2106207	C	G	2106207	3	3	312	1	0	0	0	0	1	0	0	0	16702	912	32	2	632	2	TSC2	16	2106207	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9909	2106207	88248546	529	34908										
C16orf59	0	genome.wustl.edu	37	chr16	2512165	2512165	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccagcctgtgggcccagctCagttccacacagaccagtga	10	16	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	2512165	2512165	C	G	SNP	C16orf59	ENST00000565716	human	ensembl	69_37n	1	known	missense	c.358	p.Q120E	0.103	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C16orf59	HGNC	ENSG00000162062	52	0	0	31	5	13.89	-	-	-	G	2512165	C	G	2512165	3	3	312	1	0	0	0	0	1	0	0	0	1836	813	29	2	697	2	C16orf59	16	2512165	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	405958	2512165	87842588	530	34909										
GLYR1	0	genome.wustl.edu	37	chr16	4882058	4882058	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaggggatttggagcctctCtctgaagagcctgaagacac	13	9	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	4882058	4882058	C	G	SNP	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	missense	c.459	p.E153D	0.999	NULL	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	186	0	0	122	25	17.01	-	-	-	G	4882058	C	G	4882058	3	3	312	1	0	0	0	0	1	0	0	0	6535	912	32	2	1250	2	GLYR1	16	4882058	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2369893	4882058	85472695	531	34910										
USP7	0	genome.wustl.edu	37	chr16	9009153	9009153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tagctggatatcataataatCttctcttctatcagaccgat	5	9	5	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	9009153	9009153	C	G	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	missense	c.1036	p.D346H	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	311	0	0	154	19	10.98	-	-	-	G	9009153	C	G	9009153	3	3	312	1	0	0	0	0	1	0	0	0	17185	913	32	2	2360	2	USP7	16	9009153	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4127095	9009153	81345600	532	34911										
CIITA	0	genome.wustl.edu	37	chr16	11000484	11000484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggagcagcagcaagagcctgGagcgggaactggccaccccg	16	13	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	11000484	11000484	G	A	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	missense	c.1135	p.E379K	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	31	0	0	27	6	18.18	-	-	-	A	11000484	G	A	11000484	3	1	312	1	0	0	0	0	1	0	0	0	3457	1175	41	2	1177	2	CIITA	16	11000484	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1991331	11000484	79354269	533	34912										
NDE1	0	genome.wustl.edu	37	chr16	15817991	15817991	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caacccagcgtccatggccaGagtgggggacaccccacgcc	12	17	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	15817991	15817991	G	C	SNP	NDE1	ENST00000571896	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDE1	HGNC	ENSG00000072864	81	0	0	45	6	11.76	-	-	-	C	15817991	G	C	15817991	1	2	312	0	1	0	0	0	0	0	0	0	10315	957	33	2		2	NDE1	16	15817991	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4817507	15817991	74536762	534	34913										
GDE1	0	genome.wustl.edu	37	chr16	19528440	19528440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctatctactgtgttatcgtgCattaagacaggaatcccgtc	8	10	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	19528440	19528440	C	A	SNP	GDE1	ENST00000353258	human	ensembl	69_37n	-1	known	missense	c.333	p.M111I	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDE1	HGNC	ENSG00000006007	226	0	0	141	18	11.25	-	-	-	A	19528440	C	A	19528440	3	1	312	1	0	0	0	0	1	0	0	0	6361	710	25	4	682	4	GDE1	16	19528440	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3710449	19528440	70826313	535	34914										
ACSM2B	0	genome.wustl.edu	37	chr16	20575996	20575996	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttccatcccattaccttctCcatgtcagcccagtgatcca	4	16	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	20575996	20575996	C	G	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	missense	c.172	p.E58Q	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	365	0	0	221	37	14.34	-	-	-	G	20575996	C	G	20575996	3	3	312	1	0	0	0	0	1	0	0	0	184	864	30	2	1613	2	ACSM2B	16	20575996	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1047556	20575996	69778757	536	34915										
PALB2	0	genome.wustl.edu	37	chr16	23614972	23614972	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgctgcacagtgatctttCacgtcaccttccaggaacct	8	14	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	23614972	23614972	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	silent	c.3369	p.V1123	0.972	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	98	0	0	52	11	17.46	-	-	-	T	23614972	C	T	23614972	2	4	312	1	0	0	0	0	0	0	0	1	11479	813	29	2		2	PALB2	16	23614972	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3038976	23614972	66739781	537	34916										
PALB2	0	genome.wustl.edu	37	chr16	23649225	23649225	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agacaaacaatcttgttcttCtactgttttcttaatagaat	4	7	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	23649225	23649225	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.157	p.E53K	0.010	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	459	0	0	236	58	19.73	-	-	-	T	23649225	C	T	23649225	3	4	312	1	0	0	0	0	1	0	0	0	11479	922	32	2	3447	2	PALB2	16	23649225	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	34253	23649225	66705528	538	34917										
TNRC6A	0	genome.wustl.edu	37	chr16	24820700	24820700	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caaacttgaatgtaaatatgGatatgaacagtattaaagag	8	3	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	24820700	24820700	G	A	SNP	TNRC6A	ENST00000569376	human	ensembl	69_37n	1	known	nonsense	c.96	p.W32*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNRC6A	HGNC	ENSG00000090905	93	0	0	55	8	12.7	-	-	-	A	24820700	G	A	24820700	4	1	312	1	0	0	0	0	0	1	0	0	16435	1174	41	2	4640	2	TNRC6A	16	24820700	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1171475	24820700	65534053	539	34918										
LCMT1	0	genome.wustl.edu	37	chr16	25176024	25176024	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttttgagagagccatgttCataaactacgaacaggtaaa	9	6	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	25176024	25176024	C	G	SNP	LCMT1	ENST00000575396	human	ensembl	69_37n	1	putative	nonsense	c.14	p.S5*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LCMT1	HGNC	ENSG00000205629	124	0	0	74	9	10.84	-	-	-	G	25176024	C	G	25176024	4	3	312	1	0	0	0	0	0	1	0	0	8732	825	29	2	701	2	LCMT1	16	25176024	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	355324	25176024	65178729	540	34919										
GTF3C1	0	genome.wustl.edu	37	chr16	27480781	27480781	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggaggcttgcgcaggtttCacctccatgctccggcgctt	13	13	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	27480781	27480781	C	T	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	silent	c.4905	p.V1635	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	263	0	0	123	35	22.15	-	-	-	T	27480781	C	T	27480781	2	4	312	1	0	0	0	0	0	0	0	1	6923	813	29	2		2	GTF3C1	16	27480781	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2304757	27480781	62873972	541	34920										
ITGAL	0	genome.wustl.edu	37	chr16	30485581	30485581	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctccccaccgcgcgccggGaggcactttggataccgcgt	12	16	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	30485581	30485581	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	silent	c.126	p.G42	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	23	0	0	18	4	18.18	-	-	-	A	30485581	G	A	30485581	2	1	312	1	0	0	0	0	0	0	0	1	7940	1161	41	2		2	ITGAL	16	30485581	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3004800	30485581	59869172	542	34921										
ZNF768	0	genome.wustl.edu	37	chr16	30536321	30536321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacgagttctggctatagcaCttgccgcactcggtgcagct	12	12	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	30536321	30536321	C	G	SNP	ZNF768	ENST00000380412	human	ensembl	69_37n	-1	known	missense	c.1140	p.K380N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957	81	0	0	54	7	11.48	-	-	-	G	30536321	C	G	30536321	3	3	312	1	0	0	0	0	1	0	0	0	18235	564	20	4	486	4	ZNF768	16	30536321	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	50740	30536321	59818432	543	34922										
ZNF646	0	genome.wustl.edu	37	chr16	31091915	31091915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agacccaattgggtggtgctGagccagtaccccacttggag	13	11	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	31091915	31091915	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.4270	p.E1424K	0.402	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	71	0	0	42	6	12.5	-	-	-	A	31091915	G	A	31091915	3	1	312	1	0	0	0	0	1	0	0	0	18158	1291	45	2	4272	2	ZNF646	16	31091915	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	555594	31091915	59262838	544	34923										
HEATR3	0	genome.wustl.edu	37	chr16	50102697	50102697	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacttcttgtgtagaaatctCagtgcttgtggaggttttga	11	5	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	50102697	50102697	C	T	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	silent	c.318	p.L106	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	444	0	0	217	28	11.34	-	-	-	T	50102697	C	T	50102697	2	4	312	1	0	0	0	0	0	0	0	1	7080	813	29	2		2	HEATR3	16	50102697	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	19010782	50102697	40252056	545	34924										
HEATR3	0	genome.wustl.edu	37	chr16	50120139	50120139	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttccagaatgaacactattCagtgcagagccctcttctgt	7	11	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	50120139	50120139	C	T	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	nonsense	c.1387	p.Q463*	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	75	0	0	45	6	11.76	-	-	-	T	50120139	C	T	50120139	4	4	312	1	0	0	0	0	0	1	0	0	7080	827	29	2	1429	2	HEATR3	16	50120139	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	17442	50120139	40234614	546	34925										
CHD9	0	genome.wustl.edu	37	chr16	53348816	53348816	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctcaacctcaaggaattcctGatacagaaagtccagttcca	6	12	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	53348816	53348816	G	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.7444	p.D2482H	0.999	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	179	0	0	91	19	17.27	-	-	-	C	53348816	G	C	53348816	3	2	312	1	0	0	0	0	1	0	0	0	3361	1290	45	2	7534	2	CHD9	16	53348816	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3228677	53348816	37005937	547	34926										
OGFOD1	0	genome.wustl.edu	37	chr16	56510098	56510098	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacaggtttctgggacttttCattcatctattatgaatgac	7	7	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	56510098	56510098	C	T	SNP	OGFOD1	ENST00000566157	human	ensembl	69_37n	1	known	missense	c.1610	p.S537L	1.000	NULL	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263	115	0	0	70	10	12.5	-	-	-	T	56510098	C	T	56510098	3	4	312	1	0	0	0	0	1	0	0	0	10914	838	29	2	1660	2	OGFOD1	16	56510098	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3161282	56510098	33844655	548	34927										
CCDC135	0	genome.wustl.edu	37	chr16	57758646	57758646	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggacaatgacagagtactatCaaggacgcccagacttcctc	9	12	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	57758646	57758646	C	G	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1657	p.Q553E	0.289	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	123	0	0	94	24	20.34	-	-	-	G	57758646	C	G	57758646	3	3	312	1	0	0	0	0	1	0	0	0	2794	827	29	2	1699	2	CCDC135	16	57758646	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1248548	57758646	32596107	549	34928										
NDRG4	0	genome.wustl.edu	37	chr16	58537743	58537743	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacggccttctgcatgtagtGatccggggctcccccaaggg	13	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	58537743	58537743	G	A	SNP	NDRG4	ENST00000561738	human	ensembl	69_37n	1	putative	missense	c.7	p.D3N	1.000	pfam_Ndr	pfam_Ndr	-	no_start_codon:pseudogene:no_stop_codon	NDRG4	HGNC	ENSG00000103034	66	0	0	36	7	16.28	-	-	-	A	58537743	G	A	58537743	3	1	312	1	0	0	0	0	1	0	0	0	10326	1277	45	2	233	2	NDRG4	16	58537743	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	779097	58537743	31817010	550	34929										
CNOT1	0	genome.wustl.edu	37	chr16	58555118	58555118	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggggcacagtgtacaaattCatggttccagaacttaaacg	10	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	58555118	58555118	C	G	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.7021	p.E2341Q	1.000	pfam_CCR4-Not_Not1_C	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	204	0	0	133	17	11.33	-	-	-	G	58555118	C	G	58555118	3	3	312	1	0	0	0	0	1	0	0	0	3647	835	29	2	117	2	CNOT1	16	58555118	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	17375	58555118	31799635	551	34930										
E2F4	0	genome.wustl.edu	37	chr16	67228757	67228757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgtttctacacctccacctCtgcccaagcctgccctagcc	5	20	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	67228757	67228757	C	G	SNP	E2F4	ENST00000379378	human	ensembl	69_37n	1	known	missense	c.682	p.L228V	0.862	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	224	0	0	119	17	12.41	-	-	-	G	67228757	C	G	67228757	3	3	312	1	0	0	0	0	1	0	0	0	4904	912	32	2	704	2	E2F4	16	67228757	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8673639	67228757	23125996	552	34931										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67854843	67854843	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctgttcagatgactaccgGaagcgagtagggtaagccag	13	10	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	67854843	67854843	G	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	1	known	silent	c.87	p.R29	0.006	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	75	0	0	41	9	18	-	-	-	A	67854843	G	A	67854843	2	1	312	1	0	0	0	0	0	0	0	1	16728	1161	41	2		2	TSNAXIP1	16	67854843	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	626086	67854843	22499910	553	34932										
NFATC3	0	genome.wustl.edu	37	chr16	68260336	68260336	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcaggctcccctcccgagtCctgagtccctggatttagga	12	14	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	68260336	68260336	C	G	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.3190	p.P1064A	0.234	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	117	0	0	44	13	22.81	-	-	-	G	68260336	C	G	68260336	3	3	312	1	0	0	0	0	1	0	0	0	10436	855	30	2	3458	2	NFATC3	16	68260336	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	405493	68260336	22094417	554	34933										
VAC14	0	genome.wustl.edu	37	chr16	70732665	70732665	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctcctcccgcagcaggatgtCtgccattgagtggaagatgt	12	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	70732665	70732665	C	G	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.1711	p.D571H	1.000	pfam_DUF3434,superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	161	0	0	118	15	11.28	-	-	-	G	70732665	C	G	70732665	3	3	312	1	0	0	0	0	1	0	0	0	17208	913	32	2	657	2	VAC14	16	70732665	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2472329	70732665	19622088	555	34934										
ADAT1	0	genome.wustl.edu	37	chr16	75646670	75646670	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttccaggttactactggcttCtactgatgagttgtgggccc	11	10	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	75646670	75646670	C	G	SNP	ADAT1	ENST00000307921	human	ensembl	69_37n	-1	known	missense	c.514	p.E172Q	0.006	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457	214	0	0	117	19	13.97	-	-	-	G	75646670	C	G	75646670	3	3	312	1	0	0	0	0	1	0	0	0	284	922	32	2	1014	2	ADAT1	16	75646670	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4914005	75646670	14708083	556	34935										
NUDT7	0	genome.wustl.edu	37	chr16	77775548	77775548	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggcccagccgaatcctgctGaagttaaggatgtattcctg	11	10	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	16	77775548	77775548	G	A	SNP	NUDT7	ENST00000268533	human	ensembl	69_37n	1	known	missense	c.418	p.E140K	0.998	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876	99	0	0	72	12	14.29	-	-	-	A	77775548	G	A	77775548	3	1	312	1	0	0	0	0	1	0	0	0	10817	1291	45	2	432	2	NUDT7	16	77775548	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2128878	77775548	12579205	557	34936										
MINK1	0	genome.wustl.edu	37	chr17	4800501	4800501	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttctcctgccccacccaggtGttttttgcctcagtccgctc	7	17	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	4800501	4800501	G	A	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	silent	c.3918	p.V1306	1.000	smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	202	0	0	94	12	11.21	-	-	-	A	4800501	G	A	4800501	2	1	312	1	0	0	0	0	0	0	0	1	9658	1364	48	4		4	MINK1	17	4800501	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		4800501	76394709	558	34937										
PFN1	0	genome.wustl.edu	37	chr17	4849196	4849196	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggaagggacagacgaggtCagtactgggaacgccgaagg	19	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	4849196	4849196	C	T	SNP	PFN1	ENST00000225655	human	ensembl	69_37n	-1	known	silent	c.422	p.*141	1.000	NULL	pfam_Profilin,superfamily_Profilin,smart_Profilin,prints_Profilin_mammal	-	no_errors	PFN1	HGNC	ENSG00000108518	146	1	0.68	68	11	13.92	-	-	-	T	4849196	C	T	4849196	2	4	312	1	0	0	0	0	0	0	0	1	11841	837	29	2		2	PFN1	17	4849196	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	48695	4849196	76346014	559	34938										
RPAIN	0	genome.wustl.edu	37	chr17	5331402	5331402	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attttgtagtcttctgagttGacagagcagaagcttcgtgc	11	7	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	5331402	5331402	G	C	SNP	RPAIN	ENST00000405578	human	ensembl	69_37n	1	known	missense	c.501	p.L167F	1.000	NULL	NULL	-	no_errors	RPAIN	HGNC	ENSG00000129197	193	0	0	64	10	13.51	-	-	-	C	5331402	G	C	5331402	3	2	312	1	0	0	0	0	1	0	0	0	13626	1281	45	2	523	2	RPAIN	17	5331402	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	482206	5331402	75863808	560	34939										
NLGN2	0	genome.wustl.edu	37	chr17	7320450	7320450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acctgcacaacctgcacacgGagctcttcaccaccaccacg	6	19	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	7320450	7320450	G	A	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.1840	p.E614K	0.996	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	44	0	0	16	5	23.81	-	-	-	A	7320450	G	A	7320450	3	1	312	1	0	0	0	0	1	0	0	0	10534	1175	41	2	1866	2	NLGN2	17	7320450	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1989048	7320450	73874760	561	34940										
EFNB3	0	genome.wustl.edu	37	chr17	7611466	7611466	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caaacctccttctcacttgtGatcgcccagacctggatctc	6	16	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	7611466	7611466	G	A	SNP	EFNB3	ENST00000226091	human	ensembl	69_37n	1	known	missense	c.313	p.D105N	1.000	pfam_Ephrin,superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947	32	0	0	13	5	27.78	-	-	-	A	7611466	G	A	7611466	3	1	312	1	0	0	0	0	1	0	0	0	4992	1290	45	2	319	2	EFNB3	17	7611466	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	291016	7611466	73583744	562	34941										
CNTROB	0	genome.wustl.edu	37	chr17	7851863	7851863	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtgtctcaactgttgcgactCtaccaggctcggggctgggg	15	11	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	7851863	7851863	C	G	SNP	CNTROB	ENST00000380262	human	ensembl	69_37n	1	known	silent	c.2439	p.L813	0.014	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037	286	0	0	113	13	10.24	-	-	-	G	7851863	C	G	7851863	2	3	312	1	0	0	0	0	0	0	0	1	3681	900	32	2		2	CNTROB	17	7851863	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	240397	7851863	73343347	563	34942										
DNAH9	0	genome.wustl.edu	37	chr17	11514971	11514971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttcatgatattgcaggtatGaagatctgaaatacatctat	7	6	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	11514971	11514971	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	0.995	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	165	0	0	74	10	11.9	-	-	-	A	11514971	G	A	11514971	3	1	312	1	0	0	0	0	1	0	0	0	4643	1291	45	2	792	2	DNAH9	17	11514971	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3663108	11514971	69680239	564	34943										
DNAH9	0	genome.wustl.edu	37	chr17	11520928	11520928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccaggagatttgcaaccttCtcatccagcaggtgggctgc	11	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	11520928	11520928	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.1105	p.L369V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	41	0	0	20	4	16.67	-	-	-	G	11520928	C	G	11520928	3	3	312	1	0	0	0	0	1	0	0	0	4643	913	32	2	1123	2	DNAH9	17	11520928	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5957	11520928	69674282	565	34944										
TTC19	0	genome.wustl.edu	37	chr17	15909837	15909837	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgcatttcaactctagagGaaaaaattgaaagagaaaag	8	5	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	15909837	15909837	G	C	SNP	TTC19	ENST00000261647	human	ensembl	69_37n	1	novel	missense	c.994	p.E332Q	0.978	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295	247	0	0	102	25	19.69	-	-	-	C	15909837	G	C	15909837	3	2	312	1	0	0	0	0	1	0	0	0	16783	1175	41	2	1020	2	TTC19	17	15909837	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4388909	15909837	65285373	566	34945										
CCDC144A	0	genome.wustl.edu	37	chr17	16612420	16612420	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgtgaggaagaagatgcatCtgaaatatctgtctcagtgg	12	5	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	16612420	16612420	C	G	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.1049	p.S350C	0.001	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	295	0	0	106	37	25.87	-	-	-	G	16612420	C	G	16612420	3	3	312	1	0	0	0	0	1	0	0	0	2802	913	32	2	1067	2	CCDC144A	17	16612420	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	702583	16612420	64582790	567	34946										
CCDC144A	0	genome.wustl.edu	37	chr17	16638898	16638898	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaacaaggagctgatggatGaatataatcatttaaaagaa	9	3	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	16638898	16638898	G	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.3313	p.E1105K	0.541	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	22	0	0	8	5	38.46	-	-	-	A	16638898	G	A	16638898	3	1	312	1	0	0	0	0	1	0	0	0	2802	1291	45	2	3359	2	CCDC144A	17	16638898	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	26478	16638898	64556312	568	34947										
SLC13A2	0	genome.wustl.edu	37	chr17	26821435	26821435	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagggaagctgaaggcccctCttggcctcctcgactggaag	13	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	26821435	26821435	C	T	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	missense	c.1360	p.L454F	0.469	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	221	0	0	125	25	16.56	-	-	-	T	26821435	C	T	26821435	3	4	312	1	0	0	0	0	1	0	0	0	14481	913	32	2	1394	2	SLC13A2	17	26821435	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	10182537	26821435	54373775	569	34948										
MYO1D	0	genome.wustl.edu	37	chr17	31091997	31091997	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccggtaaagaagggctttctCaaccatatctgtcttagtag	9	9	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	31091997	31091997	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	missense	c.934	p.E312K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	283	1	0.35	160	27	14.44	-	-	-	T	31091997	C	T	31091997	3	4	312	1	0	0	0	0	1	0	0	0	10143	835	29	2	2146	2	MYO1D	17	31091997	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4270562	31091997	50103213	570	34949										
ACACA	0	genome.wustl.edu	37	chr17	35549229	35549229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaggctccagatgacgataGatacgatcctcctcaaactg	9	12	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	35549229	35549229	G	C	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.4218	p.I1406M	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	87	0	0	47	6	11.32	-	-	-	C	35549229	G	C	35549229	3	2	312	1	0	0	0	0	1	0	0	0	106	932	33	2	3013	2	ACACA	17	35549229	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4457232	35549229	45645981	571	34950										
RPL19	0	genome.wustl.edu	37	chr17	37357542	37357542	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggtctggttagaccccaatGagaccaatgaaatcgccaat	9	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	37357542	37357542	G	A	SNP	RPL19	ENST00000225430	human	ensembl	69_37n	1	known	missense	c.82	p.E28K	1.000	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	pfam_Ribosomal_L19/L19e,superfamily_Ribosomal_L19/L19e	-	no_errors	RPL19	HGNC	ENSG00000108298	111	0	0	47	6	11.32	-	-	-	A	37357542	G	A	37357542	3	1	312	1	0	0	0	0	1	0	0	0	13652	1291	45	2	88	2	RPL19	17	37357542	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1808313	37357542	43837668	572	34951										
CASC3	0	genome.wustl.edu	37	chr17	38324472	38324472	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccaggtttacatccccaccaGacaccagctcctctgcccaa	5	19	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	38324472	38324472	G	C	SNP	CASC3	ENST00000264645	human	ensembl	69_37n	1	known	missense	c.1767	p.Q589H	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349	352	0	0	165	19	10.33	-	-	-	C	38324472	G	C	38324472	3	2	312	1	0	0	0	0	1	0	0	0	2686	933	33	2	1809	2	CASC3	17	38324472	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	966930	38324472	42870738	573	34952										
CDC6	0	genome.wustl.edu	37	chr17	38457243	38457243	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtttgctctttgatgctcttGatcaggcagttgaaaatcaa	9	7	4	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	38457243	38457243	G	A	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	silent	c.1413	p.L471	0.998	pfam_Cdc6_C_dom,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	131	0	0	58	13	18.31	-	-	-	A	38457243	G	A	38457243	2	1	312	1	0	0	0	0	0	0	0	1	3112	1281	45	2		2	CDC6	17	38457243	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	132771	38457243	42737967	574	34953										
KRT25	0	genome.wustl.edu	37	chr17	38907262	38907262	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgaagagtgcgcttcatttCagtcagctcattccgggctg	11	10	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	38907262	38907262	C	T	SNP	KRT25	ENST00000312150	human	ensembl	69_37n	-1	known	missense	c.901	p.E301K	0.994	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897	326	0	0	94	42	30.88	-	-	-	T	38907262	C	T	38907262	3	4	312	1	0	0	0	0	1	0	0	0	8515	835	29	2	467	2	KRT25	17	38907262	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	450019	38907262	42287948	575	34954										
KRT19	0	genome.wustl.edu	37	chr17	39681449	39681449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acagagacactcacttggttCggaagtcatctgcagccaga	10	11	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	39681449	39681449	C	T	SNP	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	missense	c.497	p.R166Q	0.988	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	121	0	0	76	10	11.49	-	-	-	T	39681449	C	T	39681449	3	4	312	1	0	0	0	0	1	0	0	0	8509	884	31	1	725	1	KRT19	17	39681449	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	774187	39681449	41513761	576	34955										
KRT9	0	genome.wustl.edu	37	chr17	39724859	39724859	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgcacctcctgaccactactGgatacctcatgctcgatctg	7	15	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	39724859	39724859	G	A	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	silent	c.1071	p.S357	0.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	181	0	0	81	22	21.36	-	-	-	A	39724859	G	A	39724859	2	1	312	1	0	0	0	0	0	0	0	1	8554	1335	47	4		4	KRT9	17	39724859	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	43410	39724859	41470351	577	34956										
TTC25	0	genome.wustl.edu	37	chr17	40117254	40117254	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctgtcaggagaattaggcaCaagatcaggagaaacaggca	12	8	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	40117254	40117254	C	G	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	133	0	0	38	9	19.15	-	-	-	G	40117254	C	G	40117254	1	3	312	0	1	0	0	0	0	0	0	0	16790	478	17	4		4	TTC25	17	40117254	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	392395	40117254	41077956	578	34957										
TBX21	0	genome.wustl.edu	37	chr17	45820054	45820054	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggatgtttgtggacgtggtCttggtggaccagcaccactg	15	8	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	45820054	45820054	C	T	SNP	TBX21	ENST00000177694	human	ensembl	69_37n	1	known	silent	c.570	p.V190	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861	126	0	0	72	8	10	-	-	-	T	45820054	C	T	45820054	2	4	312	1	0	0	0	0	0	0	0	1	15752	900	32	2		2	TBX21	17	45820054	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5702800	45820054	35375156	579	34958										
HOXB4	0	genome.wustl.edu	37	chr17	46655607	46655607	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcgctgggtaggtaatcgctCtgtgaatattcctcgcatgg	12	9	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	46655607	46655607	C	A	SNP	HOXB4	ENST00000332503	human	ensembl	69_37n	-1	known	missense	c.75	p.Q25H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB4	HGNC	ENSG00000182742	41	0	0	15	3	16.67	-	-	-	A	46655607	C	A	46655607	3	1	312	1	0	0	0	0	1	0	0	0	7354	912	32	2	688	2	HOXB4	17	46655607	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	835553	46655607	34539603	580	34959										
HOXB4	0	genome.wustl.edu	37	chr17	46655621	46655621	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atcgctctgtgaatattcctCgcatggagggaacttggggt	13	8	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	46655621	46655621	C	G	SNP	HOXB4	ENST00000332503	human	ensembl	69_37n	-1	known	missense	c.61	p.E21Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB4	HGNC	ENSG00000182742	44	0	0	20	3	13.04	-	-	-	G	46655621	C	G	46655621	3	3	312	1	0	0	0	0	1	0	0	0	7354	893	31	3	702	3	HOXB4	17	46655621	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14	46655621	34539589	581	34960										
CALCOCO2	0	genome.wustl.edu	37	chr17	46926688	46926688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagctgaaggacagctgtatCagcctccagaagcagaactc	11	11	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	46926688	46926688	C	G	SNP	CALCOCO2	ENST00000258947	human	ensembl	69_37n	1	known	missense	c.492	p.I164M	0.005	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO2	HGNC	ENSG00000136436	146	0	0	68	15	18.07	-	-	-	G	46926688	C	G	46926688	3	3	312	1	0	0	0	0	1	0	0	0	2603	816	29	2	506	2	CALCOCO2	17	46926688	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	271067	46926688	34268522	582	34961										
B4GALNT2	0	genome.wustl.edu	37	chr17	47219488	47219488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atggccagagcgacctcccaGcggtgaaagcgaggagacag	15	11	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	47219488	47219488	G	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	missense	c.487	p.A163T	0.446	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	138	0	0	102	16	13.56	-	-	-	A	47219488	G	A	47219488	3	1	312	1	0	0	0	0	1	0	0	0	1271	971	34	4	515	4	B4GALNT2	17	47219488	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	292800	47219488	33975722	583	34962										
PPP1R9B	0	genome.wustl.edu	37	chr17	48213557	48213557	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccttctcctgctccaggctCtgcagctgagagagaaaggc	11	14	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	48213557	48213557	C	G	SNP	PPP1R9B	ENST00000316878	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPP1R9B	HGNC	ENSG00000108819	124	0	0	90	12	11.76	-	-	-	G	48213557	C	G	48213557	1	3	312	0	1	0	0	0	0	0	0	0	12456	912	32	2		2	PPP1R9B	17	48213557	RNA	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	994069	48213557	32981653	584	34963										
WFIKKN2	0	genome.wustl.edu	37	chr17	48917652	48917652	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcctgaagcccccagacagtGaggactgtggcgaagagcag	15	11	0	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	48917652	48917652	G	A	SNP	WFIKKN2	ENST00000311378	human	ensembl	69_37n	1	known	missense	c.1003	p.E335K	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714	48	0	0	41	5	10.87	-	-	-	A	48917652	G	A	48917652	3	1	312	1	0	0	0	0	1	0	0	0	17456	1291	45	2	1009	2	WFIKKN2	17	48917652	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	704095	48917652	32277558	585	34964										
WFIKKN2	0	genome.wustl.edu	37	chr17	48917949	48917949	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agagccgtgaggcctgtgagGagtcgtgccccttccccagg	15	13	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	48917949	48917949	G	T	SNP	WFIKKN2	ENST00000311378	human	ensembl	69_37n	1	known	nonsense	c.1300	p.E434*	1.000	pfam_Prot_inh_Kunz-m,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714	48	0	0	40	5	11.11	-	-	-	T	48917949	G	T	48917949	4	4	312	1	0	0	0	0	0	1	0	0	17456	1175	41	2	1306	2	WFIKKN2	17	48917949	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	297	48917949	32277261	586	34965										
MPO	0	genome.wustl.edu	37	chr17	56355507	56355507	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgggggtcattgggcgggatCtgaggcacagagagaggcta	19	7	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	56355507	56355507	C	T	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	splice_site	c.982-1	e6-1	1.000	-	-	-	no_errors	MPO	HGNC	ENSG00000005381	126	0	0	63	9	12.5	-	-	-	T	56355507	C	T	56355507	5	4	312	1	0	0	0	0	0	0	1	0	9804	927	32	2	1376	2	MPO	17	56355507	Splice_Site	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7437558	56355507	24839703	587	34966										
MPO	0	genome.wustl.edu	37	chr17	56358002	56358002	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agagggctggggcgtggccaGaatggccaggagccctgcta	18	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	56358002	56358002	G	C	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	missense	c.118	p.L40V	0.002	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	88	0	0	42	5	10.64	-	-	-	C	56358002	G	C	56358002	3	2	312	1	0	0	0	0	1	0	0	0	9804	933	33	2	2167	2	MPO	17	56358002	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2495	56358002	24837208	588	34967										
GDPD1	0	genome.wustl.edu	37	chr17	57322856	57322856	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgtagtgtcacatgatgaGaatctaaagagagcaactgg	12	5	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	57322856	57322856	G	C	SNP	GDPD1	ENST00000284116	human	ensembl	69_37n	1	known	missense	c.267	p.E89D	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	131	0	0	85	10	10.53	-	-	-	C	57322856	G	C	57322856	3	2	312	1	0	0	0	0	1	0	0	0	6375	933	33	2	277	2	GDPD1	17	57322856	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	964854	57322856	23872354	589	34968										
USP32	0	genome.wustl.edu	37	chr17	58256660	58256660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtaatcagactcaaagtcttCatccatactgcttgtgtctg	7	10	5	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	58256660	58256660	C	T	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4771	p.E1591K	1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	324	0	0	176	24	12	-	-	-	T	58256660	C	T	58256660	3	4	312	1	0	0	0	0	1	0	0	0	17160	835	29	2	47	2	USP32	17	58256660	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	933804	58256660	22938550	590	34969										
TANC2	0	genome.wustl.edu	37	chr17	61473154	61473154	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctttggttcatgctgcactCcgaggtcatctggaggttgt	13	9	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	61473154	61473154	C	G	SNP	TANC2	ENST00000583356	human	ensembl	69_37n	1	putative	missense	c.2666	p.S889C	0.985	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	365	0	0	302	40	11.7	-	-	-	G	61473154	C	G	61473154	3	3	312	1	0	0	0	0	1	0	0	0	15637	842	30	2	2942	2	TANC2	17	61473154	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3216494	61473154	19722056	591	34970										
RGS9	0	genome.wustl.edu	37	chr17	63204106	63204106	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggccaaagctattgaacctCaggaaaccaccaagaaaagg	9	10	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	63204106	63204106	C	T	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	nonsense	c.1270	p.Q424*	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	288	1	0.35	211	27	11.3	-	-	-	T	63204106	C	T	63204106	4	4	312	1	0	0	0	0	0	1	0	0	13397	827	29	2	1332	2	RGS9	17	63204106	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1730952	63204106	17991104	592	34971										
PRKCA	0	genome.wustl.edu	37	chr17	64731637	64731637	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccgacaggaagggcacagaaGaactgtatgcaatcaaaatc	10	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	64731637	64731637	G	A	SNP	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	missense	c.1087	p.E363K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	160	0	0	102	26	20.31	-	-	-	A	64731637	G	A	64731637	3	1	312	1	0	0	0	0	1	0	0	0	12588	943	33	2	1125	2	PRKCA	17	64731637	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1527531	64731637	16463573	593	34972										
BPTF	0	genome.wustl.edu	37	chr17	65871671	65871671	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttgttgtgcattttgctgtaGagccaacagaagttggggat	13	5	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	65871671	65871671	G	C	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	splice_site	c.1865-1	e5-1	1.000	-	-	-	no_errors	BPTF	HGNC	ENSG00000171634	76	0	0	45	5	10	-	-	-	C	65871671	G	C	65871671	5	2	312	1	0	0	0	0	0	0	1	0	1503	956	33	2	1882	2	BPTF	17	65871671	Splice_Site	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1140034	65871671	15323539	594	34973										
BPTF	0	genome.wustl.edu	37	chr17	65908868	65908868	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacagaaaattgtgcaaaatCcactgtcacaaccaccacta	4	13	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	65908868	65908868	C	G	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.5246	p.S1749C	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	85	0	0	72	8	10	-	-	-	G	65908868	C	G	65908868	3	3	312	1	0	0	0	0	1	0	0	0	1503	855	30	2	5296	2	BPTF	17	65908868	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	37197	65908868	15286342	595	34974										
CCDC40	0	genome.wustl.edu	37	chr17	78059891	78059891	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggcggtccaggcccaggtGacctggctgcgcctgcagca	15	14	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	78059891	78059891	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	silent	c.2325	p.V775	0.492	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	74	0	0	37	5	11.9	-	-	-	A	78059891	G	A	78059891	2	1	312	1	0	0	0	0	0	0	0	1	2838	1277	45	2		2	CCDC40	17	78059891	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12151023	78059891	3135319	596	34975										
SLC38A10	0	genome.wustl.edu	37	chr17	79262575	79262575	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tccagcaacagcccaggcctGaggagcttcctccatggaat	10	14	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	17	79262575	79262575	G	A	SNP	SLC38A10	ENST00000540233	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC38A10	HGNC	ENSG00000157637	17	0	0	7	3	30	-	-	-	A	79262575	G	A	79262575	1	1	312	0	1	0	0	0	0	0	0	0	14691	1305	45	2		2	SLC38A10	17	79262575	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1202684	79262575	1932635	597	34976										
ANKRD12	0	genome.wustl.edu	37	chr18	9254693	9254693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcaaagttaaaagaaaattGaaaaatcagaataaaaataa	6	2	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	9254693	9254693	G	C	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.1428	p.L476F	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	32	0	0	7	3	30	-	-	-	C	9254693	G	C	9254693	3	2	312	1	0	0	0	0	1	0	0	0	640	1281	45	2	1458	2	ANKRD12	18	9254693	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		9254693	68822555	598	34977										
RALBP1	0	genome.wustl.edu	37	chr18	9513245	9513245	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtctgatgatgagaaagatCatgggaagaaaaaagggaaa	13	2	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	9513245	9513245	C	G	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	missense	c.202	p.H68D	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	137	0	0	47	10	17.54	-	-	-	G	9513245	C	G	9513245	3	3	312	1	0	0	0	0	1	0	0	0	13095	826	29	2	204	2	RALBP1	18	9513245	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	258552	9513245	68564003	599	34978										
RBBP8	0	genome.wustl.edu	37	chr18	20596816	20596816	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctagcttgcaaaattttcctCatattgaggtggttcggaaa	9	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	20596816	20596816	C	G	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	missense	c.2383	p.H795D	1.000	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	312	0	0	155	25	13.89	-	-	-	G	20596816	C	G	20596816	3	3	312	1	0	0	0	0	1	0	0	0	13188	826	29	2	2445	2	RBBP8	18	20596816	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	11083571	20596816	57480432	600	34979										
NPC1	0	genome.wustl.edu	37	chr18	21136398	21136398	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctgggggctgaccagaggtCaactggattggttgtgaccc	16	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	21136398	21136398	C	G	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.1135	p.D379H	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	130	0	0	94	11	10.48	-	-	-	G	21136398	C	G	21136398	3	3	312	1	0	0	0	0	1	0	0	0	10642	826	29	2	2773	2	NPC1	18	21136398	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	539582	21136398	56940850	601	34980										
LAMA3	0	genome.wustl.edu	37	chr18	21494748	21494748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agtctatgacatggatggtaGaaatagcaatacactcctta	8	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	21494748	21494748	G	C	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.7568	p.R2523T	0.156	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	180	0	0	98	13	11.71	-	-	-	C	21494748	G	C	21494748	3	2	312	1	0	0	0	0	1	0	0	0	8661	942	33	2	7973	2	LAMA3	18	21494748	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	358350	21494748	56582500	602	34981										
TTC39C	0	genome.wustl.edu	37	chr18	21663021	21663021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcttccctctttatgtttttCaagggacggatacaacgact	7	10	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	21663021	21663021	C	G	SNP	TTC39C	ENST00000317571	human	ensembl	69_37n	1	known	missense	c.960	p.F320L	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	-	no_errors	TTC39C	HGNC	ENSG00000168234	222	0	0	101	14	12.17	-	-	-	G	21663021	C	G	21663021	3	3	312	1	0	0	0	0	1	0	0	0	16806	825	29	2	982	2	TTC39C	18	21663021	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	168273	21663021	56414227	603	34982										
OSBPL1A	0	genome.wustl.edu	37	chr18	21750311	21750311	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgtttgctgttcttcttctCttctgtatttttcttatcat	4	9	6	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	21750311	21750311	C	G	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	missense	c.2398	p.E800Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	594	0	0	266	103	27.76	-	-	-	G	21750311	C	G	21750311	3	3	312	1	0	0	0	0	1	0	0	0	11350	922	32	2	474	2	OSBPL1A	18	21750311	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	87290	21750311	56326937	604	34983										
DSC2	0	genome.wustl.edu	37	chr18	28669404	28669404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acacattttagactttacctCaaaagattcatactgctcac	3	11	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	28669404	28669404	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.628	p.E210K	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	141	0	0	61	10	14.08	-	-	-	T	28669404	C	T	28669404	3	4	312	1	0	0	0	0	1	0	0	0	4801	835	29	2	2165	2	DSC2	18	28669404	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	6919093	28669404	49407844	605	34984										
DSC2	0	genome.wustl.edu	37	chr18	28669422	28669422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctcaaaagattcatactgctCacgatctacaggacgagtac	7	11	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	28669422	28669422	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.610	p.E204K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	182	0	0	73	11	13.1	-	-	-	T	28669422	C	T	28669422	3	4	312	1	0	0	0	0	1	0	0	0	4801	835	29	2	2183	2	DSC2	18	28669422	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	18	28669422	49407826	606	34985										
MEP1B	0	genome.wustl.edu	37	chr18	29787254	29787254	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacctatagtgacgatatatCagattccctgaatgttccct	6	11	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	29787254	29787254	C	T	SNP	MEP1B	ENST00000269202	human	ensembl	69_37n	1	known	missense	c.587	p.S196L	0.904	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434	88	0	0	53	9	14.52	-	-	-	T	29787254	C	T	29787254	3	4	312	1	0	0	0	0	1	0	0	0	9547	838	29	2	617	2	MEP1B	18	29787254	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1117832	29787254	48289994	607	34986										
MEP1B	0	genome.wustl.edu	37	chr18	29797015	29797015	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcccctagtgttcaagacctCtgctcaaaaaccacctgtaa	6	14	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	29797015	29797015	C	T	SNP	MEP1B	ENST00000269202	human	ensembl	69_37n	1	known	silent	c.1821	p.L607	0.028	pirsf_Pept_M12A_Meprin,pfscan_EG-like_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434	430	0	0	196	54	21.6	-	-	-	T	29797015	C	T	29797015	2	4	312	1	0	0	0	0	0	0	0	1	9547	900	32	2		2	MEP1B	18	29797015	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	9761	29797015	48280233	608	34987										
SLC39A6	0	genome.wustl.edu	37	chr18	33691198	33691198	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggtcatgccagcctttagtaGaacagcaaagtcacctttaa	8	10	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	33691198	33691198	G	A	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	silent	c.1939	p.L647	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	118	0	0	68	13	16.05	-	-	-	A	33691198	G	A	33691198	2	1	312	1	0	0	0	0	0	0	0	1	14711	933	33	2		2	SLC39A6	18	33691198	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3894183	33691198	44386050	609	34988										
PMAIP1	0	genome.wustl.edu	37	chr18	57570023	57570023	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atgaggggactccttcaaaaGagttttctcaggaggtgcac	12	8	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	57570023	57570023	G	C	SNP	PMAIP1	ENST00000269518	human	ensembl	69_37n	1	novel	missense	c.354	p.K118N	0.000	NULL	NULL	-	no_errors	PMAIP1	HGNC	ENSG00000141682	87	0	0	45	15	25	-	-	-	C	57570023	G	C	57570023	3	2	312	1	0	0	0	0	1	0	0	0	12204	957	33	2		2	PMAIP1	18	57570023	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	23878825	57570023	20507225	610	34989										
VPS4B	0	genome.wustl.edu	37	chr18	61060743	61060743	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcaaggtgttagcagatcatCtacaagatggttaggatcag	12	6	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	61060743	61060743	C	G	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.1132	p.D378H	0.998	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	112	0	0	75	10	11.76	-	-	-	G	61060743	C	G	61060743	3	3	312	1	0	0	0	0	1	0	0	0	17310	913	32	2	210	2	VPS4B	18	61060743	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3490720	61060743	17016505	611	34990										
CBLN2	0	genome.wustl.edu	37	chr18	70205948	70205948	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgaagctataaatccctttTctcggtgctacaaatatact	5	10	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	18	70205948	70205948	T	G	SNP	CBLN2	ENST00000269503	human	ensembl	69_37n	-1	known	missense	c.417	p.R139S	0.931	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668	245	0	0	132	18	12	-	-	-	G	70205948	T	G	70205948	3	3	312	1	0	0	0	0	1	0	0	0	2730	1780	62	5	265	5	CBLN2	18	70205948	Missense_Mutation	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09	9145205	70205948	7871300	612	34991										
MIER2	0	genome.wustl.edu	37	chr19	326542	326542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcaggaagagagtcctcctCggtgtcggaggaggcagaag	18	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	326542	326542	C	T	SNP	MIER2	ENST00000264819	human	ensembl	69_37n	-1	known	missense	c.550	p.E184K	0.958	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556	133	0	0	65	17	20.73	-	-	-	T	326542	C	T	326542	3	4	312	1	0	0	0	0	1	0	0	0	9652	893	31	1	1123	1	MIER2	19	326542	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09		326542	58802441	613	34992										
MIER2	0	genome.wustl.edu	37	chr19	326574	326574	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aggcagaagagccaggctctCtgtcttcatcagccaggaaa	11	11	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	326574	326574	C	A	SNP	MIER2	ENST00000264819	human	ensembl	69_37n	-1	known	missense	c.518	p.R173I	0.012	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556	103	0	0	49	13	20.97	-	-	-	A	326574	C	A	326574	3	1	312	1	0	0	0	0	1	0	0	0	9652	913	32	2	1155	2	MIER2	19	326574	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	32	326574	58802409	614	34993										
MED16	0	genome.wustl.edu	37	chr19	891096	891096	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagacgtaggccaagtccatCatcccacctgccgctggccg	10	17	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	891096	891096	C	T	SNP	MED16	ENST00000325464	human	ensembl	69_37n	-1	known	missense	c.36	p.M12I	0.004	NULL	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	72	0	0	30	11	26.83	-	-	-	T	891096	C	T	891096	3	4	312	1	0	0	0	0	1	0	0	0	9505	826	29	2	2657	2	MED16	19	891096	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	564522	891096	58237887	615	34994										
TCF3	0	genome.wustl.edu	37	chr19	1615708	1615708	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtccgggcccggggggccttCagctccttcttctcctcctc	11	18	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	1615708	1615708	C	G	SNP	TCF3	ENST00000593064	human	ensembl	69_37n	-1	known	nonstop	c.212	p.*71S	0.814	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF3	HGNC	ENSG00000071564	86	0	0	26	7	21.21	-	-	-	G	1615708	C	G	1615708	4	3	312	1	0	0	0	0	0	0	0	0	15789	813	29	2	644	2	TCF3	19	1615708	Nonstop_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	724612	1615708	57513275	616	34995										
GPR108	0	genome.wustl.edu	37	chr19	6732521	6732521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtacatgacggcaaggccttCgatggggtggccctggctgt	16	10	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	6732521	6732521	C	T	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	missense	c.973	p.E325K	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	129	0	0	47	12	20.34	-	-	-	T	6732521	C	T	6732521	3	4	312	1	0	0	0	0	1	0	0	0	6674	893	31	1	690	1	GPR108	19	6732521	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5116813	6732521	52396462	617	34996										
ILF3	0	genome.wustl.edu	37	chr19	10781688	10781688	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtgaatgatgaccgccatgtGatggcaaagcattcttccgt	11	9	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	10781688	10781688	G	C	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	silent	c.42	p.V14	0.997	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	156	0	0	68	9	11.54	-	-	-	C	10781688	G	C	10781688	2	2	312	1	0	0	0	0	0	0	0	1	7766	1277	45	2		2	ILF3	19	10781688	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	4049167	10781688	48347295	618	34997										
ZNF625	0	genome.wustl.edu	37	chr19	12256735	12256735	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaagctttttccacattcctCacaatcataaggtttccccc	3	14	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	12256735	12256735	C	T	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	missense	c.496	p.E166K	0.467	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	229	0	0	118	20	14.49	-	-	-	T	12256735	C	T	12256735	3	4	312	1	0	0	0	0	1	0	0	0	18145	835	29	2	626	2	ZNF625	19	12256735	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1475047	12256735	46872248	619	34998										
ZSWIM4	0	genome.wustl.edu	37	chr19	13928148	13928148	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcctgtcgtctggaggaggaGacacttaccctttacccagg	12	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	13928148	13928148	G	C	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.1299	p.E433D	0.539	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	53	0	0	14	4	22.22	-	-	-	C	13928148	G	C	13928148	3	2	312	1	0	0	0	0	1	0	0	0	18334	933	33	2	1325	2	ZSWIM4	19	13928148	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1671413	13928148	45200835	620	34999										
CYP4F2	0	genome.wustl.edu	37	chr19	16003212	16003212	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcatccgacggtggcggctCcacttgtcaccagcactcag	11	15	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	16003212	16003212	C	G	SNP	CYP4F2	ENST00000221700	human	ensembl	69_37n	-1	known	missense	c.432	p.W144C	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	229	0	0	129	21	14	-	-	-	G	16003212	C	G	16003212	3	3	312	1	0	0	0	0	1	0	0	0	4219	856	30	2	1166	2	CYP4F2	19	16003212	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2075064	16003212	43125771	621	35000										
SLC5A5	0	genome.wustl.edu	37	chr19	17983261	17983261	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggggcgggcagcgcagcgctGaggacttcttcaccgggggc	19	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	17983261	17983261	G	A	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	missense	c.133	p.E45K	0.990	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	43	0	0	10	8	44.44	-	-	-	A	17983261	G	A	17983261	3	1	312	1	0	0	0	0	1	0	0	0	14757	1291	45	2	135	2	SLC5A5	19	17983261	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1980049	17983261	41145722	622	35001										
PIK3R2	0	genome.wustl.edu	37	chr19	18273836	18273836	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agatgggcactatggcttctCagagccactcaccttctgct	9	13	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	18273836	18273836	C	T	SNP	PIK3R2	ENST00000222254	human	ensembl	69_37n	1	known	missense	c.1169	p.S390L	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647	138	0	0	77	17	18.09	-	-	-	T	18273836	C	T	18273836	3	4	312	1	0	0	0	0	1	0	0	0	11993	838	29	2	1203	2	PIK3R2	19	18273836	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	290575	18273836	40855147	623	35002										
ZNF429	0	genome.wustl.edu	37	chr19	21719431	21719431	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcacaactaactcaacataaGaaaattcatattagagagaa	4	7	3	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	21719431	21719431	G	C	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.576	p.K192N	0.926	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	209	0	0	93	15	13.89	-	-	-	C	21719431	G	C	21719431	3	2	312	1	0	0	0	0	1	0	0	0	17998	933	33	2	590	2	ZNF429	19	21719431	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3445595	21719431	37409552	624	35003										
ZNF429	0	genome.wustl.edu	37	chr19	21720033	21720033	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acataaaaaaattcatactgGagaggaaccctacaaatttg	6	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	21720033	21720033	G	C	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.1178	p.G393A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	93	0	0	44	8	15.38	-	-	-	C	21720033	G	C	21720033	3	2	312	1	0	0	0	0	1	0	0	0	17998	1174	41	2	1192	2	ZNF429	19	21720033	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	602	21720033	37408950	625	35004										
CCNE1	0	genome.wustl.edu	37	chr19	30311662	30311662	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttttacttggcacaagatttCtttgaccggtatatggcgac	9	8	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	30311662	30311662	C	G	SNP	CCNE1	ENST00000262643	human	ensembl	69_37n	1	known	missense	c.516	p.F172L	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173	194	0	0	123	19	13.38	-	-	-	G	30311662	C	G	30311662	3	3	312	1	0	0	0	0	1	0	0	0	2949	912	32	2	538	2	CCNE1	19	30311662	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	8591629	30311662	28817321	626	35005										
ZNF585A	0	genome.wustl.edu	37	chr19	37642658	37642658	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcacacacgtaaggcttctCtccagtgtgaattcgctgat	9	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	37642658	37642658	C	G	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	missense	c.2143	p.E715Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	359	0	0	213	37	14.8	-	-	-	G	37642658	C	G	37642658	3	3	312	1	0	0	0	0	1	0	0	0	18113	922	32	2	170	2	ZNF585A	19	37642658	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7330996	37642658	21486325	627	35006										
ZNF527	0	genome.wustl.edu	37	chr19	37880266	37880266	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atcaaagaattcacacaggaGagaaacccttcaaatgtagt	7	8	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	37880266	37880266	G	C	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.1315	p.E439Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	174	0	0	87	14	13.73	-	-	-	C	37880266	G	C	37880266	3	2	312	1	0	0	0	0	1	0	0	0	18064	943	33	2	1329	2	ZNF527	19	37880266	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	237608	37880266	21248717	628	35007										
ZNF527	0	genome.wustl.edu	37	chr19	37880322	37880322	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tttggctatcgctcacacctGaatcaacatcagagaattca	6	11	4	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	37880322	37880322	G	A	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	silent	c.1371	p.L457	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	221	0	0	115	15	11.54	-	-	-	A	37880322	G	A	37880322	2	1	312	1	0	0	0	0	0	0	0	1	18064	1277	45	2		2	ZNF527	19	37880322	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	56	37880322	21248661	629	35008										
ZNF540	0	genome.wustl.edu	37	chr19	38103034	38103034	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agggtttttttagtagattaGaacttactcaacataaaaga	7	4	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	38103034	38103034	G	T	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	nonsense	c.853	p.E285*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	67	0	0	24	11	31.43	-	-	-	T	38103034	G	T	38103034	4	4	312	1	0	0	0	0	0	1	0	0	18071	943	33	2	867	2	ZNF540	19	38103034	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	222712	38103034	21025949	630	35009										
ZFP30	0	genome.wustl.edu	37	chr19	38126340	38126340	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctctgatggagagttagatGatagccacgactgaaagtct	11	7	2	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	38126340	38126340	G	A	SNP	ZFP30	ENST00000351218	human	ensembl	69_37n	-1	known	missense	c.1102	p.H368Y	0.934	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	170	0	0	70	26	27.08	-	-	-	A	38126340	G	A	38126340	3	1	312	1	0	0	0	0	1	0	0	0	17740	1290	45	2	461	2	ZFP30	19	38126340	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	23306	38126340	21002643	631	35010										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41798307	41798307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggagttcaacttcggacagaGagcagagccctactgttctg	12	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	41798307	41798307	G	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.1157	p.R386K	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	209	0	0	126	25	16.56	-	-	-	A	41798307	G	A	41798307	3	1	312	1	0	0	0	0	1	0	0	0	7325	942	33	2	1187	2	HNRNPUL1	19	41798307	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3671967	41798307	17330676	632	35011										
CEACAM21	0	genome.wustl.edu	37	chr19	42083792	42083792	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cagcggtcgagagacaatatCacccagtggagatctgcatt	11	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	42083792	42083792	C	G	SNP	CEACAM21	ENST00000401445	human	ensembl	69_37n	1	known	nonsense	c.305	p.S102*	0.003	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM21	HGNC	ENSG00000007129	133	0	0	83	10	10.75	-	-	-	G	42083792	C	G	42083792	4	3	312	1	0	0	0	0	0	1	0	0	3221	838	29	2	311	2	CEACAM21	19	42083792	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	285485	42083792	17045191	633	35012										
PSG7	0	genome.wustl.edu	37	chr19	43433868	43433868	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagatggagggtttgggagtCtccactgtgcggaaaacaga	16	6	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	43433868	43433868	C	G	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	missense	c.435	p.E145D	0.000	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	357	0	0	251	37	12.85	-	-	-	G	43433868	C	G	43433868	3	3	312	1	0	0	0	0	1	0	0	0	12740	912	32	2	840	2	PSG7	19	43433868	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1350076	43433868	15695115	634	35013										
LYPD3	0	genome.wustl.edu	37	chr19	43965792	43965792	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagtggtgacagatgtggttGaggccacagtcgtgggctct	16	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	43965792	43965792	G	C	SNP	LYPD3	ENST00000244333	human	ensembl	69_37n	-1	known	nonsense	c.752	p.S251*	0.000	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD3	HGNC	ENSG00000124466	313	0	0	195	22	10.14	-	-	-	C	43965792	G	C	43965792	4	2	312	1	0	0	0	0	0	1	0	0	9178	1294	45	2	292	2	LYPD3	19	43965792	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	531924	43965792	15163191	635	35014										
SLC8A2	0	genome.wustl.edu	37	chr19	47940726	47940726	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctccccacttacctgcgctCaccgtaattgcctctaaaaa	4	17	2	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	47940726	47940726	C	T	SNP	SLC8A2	ENST00000236877	human	ensembl	69_37n	-1	known	silent	c.2103	p.V701	1.000	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	482	1	0.21	315	37	10.51	-	-	-	T	47940726	C	T	47940726	2	4	312	1	0	0	0	0	0	0	0	1	14796	813	29	2		2	SLC8A2	19	47940726	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3974934	47940726	11188257	636	35015										
MAMSTR	0	genome.wustl.edu	37	chr19	49216976	49216976	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcagtttggatcctaccatCaggctccacctgatcctcca	7	15	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	49216976	49216976	C	G	SNP	MAMSTR	ENST00000318083	human	ensembl	69_37n	-1	known	missense	c.961	p.D321H	0.111	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	MAMSTR	HGNC	ENSG00000176909	226	0	0	164	28	14.58	-	-	-	G	49216976	C	G	49216976	3	3	312	1	0	0	0	0	1	0	0	0	9280	826	29	2	294	2	MAMSTR	19	49216976	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1276250	49216976	9912007	637	35016										
PPFIA3	0	genome.wustl.edu	37	chr19	49652005	49652005	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcggaggcgggaagaaagtCagacccagatccgaggtgag	17	8	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	49652005	49652005	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	nonsense	c.3094	p.Q1032*	1.000	superfamily_SAM/pointed	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	94	0	0	57	18	24	-	-	-	T	49652005	C	T	49652005	4	4	312	1	0	0	0	0	0	1	0	0	12384	827	29	2	3188	2	PPFIA3	19	49652005	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	435029	49652005	9476978	638	35017										
ALDH16A1	0	genome.wustl.edu	37	chr19	49965874	49965874	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgtgtgggatgaagccatGagacggctgcaggagcggat	17	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	49965874	49965874	G	A	SNP	ALDH16A1	ENST00000293350	human	ensembl	69_37n	1	known	missense	c.960	p.M320I	0.088	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618	84	0	0	52	8	13.33	-	-	-	A	49965874	G	A	49965874	3	1	312	1	0	0	0	0	1	0	0	0	488	1290	45	2	990	2	ALDH16A1	19	49965874	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	313869	49965874	9163109	639	35018										
CPT1C	0	genome.wustl.edu	37	chr19	50209591	50209591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgtcactggatgctgagcccGcggggctcaccagggaggac	16	12	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	50209591	50209591	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.1264	p.A422T	0.343	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	26	0	0	23	4	14.81	-	-	-	A	50209591	G	A	50209591	3	1	312	1	0	0	0	0	1	0	0	0	3863	1087	38	1	1302	1	CPT1C	19	50209591	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	243717	50209591	8919392	640	35019										
ZNF473	0	genome.wustl.edu	37	chr19	50548387	50548387	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cgtcttacccagcactggatCactcatactagggagaaacc	8	13	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	50548387	50548387	C	T	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	silent	c.687	p.I229	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	107	0	0	59	19	24.36	-	-	-	T	50548387	C	T	50548387	2	4	312	1	0	0	0	0	0	0	0	1	18027	816	29	2		2	ZNF473	19	50548387	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	338796	50548387	8580596	641	35020										
KLK11	0	genome.wustl.edu	37	chr19	51527553	51527553	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gaggttgtgctgccccaggtGaactatgtagcggctgaggt	16	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	51527553	51527553	G	A	SNP	KLK11	ENST00000319756	human	ensembl	69_37n	-1	known	missense	c.307	p.H103Y	0.932	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757	205	0	0	118	19	13.87	-	-	-	A	51527553	G	A	51527553	3	1	312	1	0	0	0	0	1	0	0	0	8452	1290	45	2	553	2	KLK11	19	51527553	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	979166	51527553	7601430	642	35021										
ZNF175	0	genome.wustl.edu	37	chr19	52091164	52091164	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaccagaaaattcatactgGagaaagacaccatgtatgca	7	9	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	52091164	52091164	G	C	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	missense	c.1580	p.G527A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	181	1	0.55	102	15	12.82	-	-	-	C	52091164	G	C	52091164	3	2	312	1	0	0	0	0	1	0	0	0	17841	1174	41	2	1594	2	ZNF175	19	52091164	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	563611	52091164	7037819	643	35022										
ZNF432	0	genome.wustl.edu	37	chr19	52538393	52538393	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tattggcttttgtacttacaGagaatttagctgcagaataa	8	5	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	52538393	52538393	G	A	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.539	p.S180F	0.141	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	205	0	0	136	16	10.53	-	-	-	A	52538393	G	A	52538393	3	1	312	1	0	0	0	0	1	0	0	0	18002	942	33	2	1423	2	ZNF432	19	52538393	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	447229	52538393	6590590	644	35023										
ZNF578	0	genome.wustl.edu	37	chr19	53013980	53013980	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atattcatgactttgagtttCagtcacaaaaagatgaaaga	7	5	3	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	53013980	53013980	C	G	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.346	p.Q116E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	222	0	0	195	22	10.14	-	-	-	G	53013980	C	G	53013980	3	3	312	1	0	0	0	0	1	0	0	0	18106	827	29	2	356	2	ZNF578	19	53013980	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	475587	53013980	6115003	645	35024										
CNOT3	0	genome.wustl.edu	37	chr19	54656363	54656363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctgactctgagcgtattcGgtgaggggccacagggaagg	16	9	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	54656363	54656363	G	A	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.1904	p.R635Q	1.000	pfam_NOT,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	29	0	0	29	6	16.67	-	-	-	A	54656363	G	A	54656363	3	1	312	1	0	0	0	0	1	0	0	0	3650	1130	39	1	1958	1	CNOT3	19	54656363	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1642383	54656363	4472620	646	35025										
TSEN34	0	genome.wustl.edu	37	chr19	54695751	54695751	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcaagccaggaggccggctcGagccaggctgccaaagagga	15	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	54695751	54695751	G	C	SNP	TSEN34	ENST00000429671	human	ensembl	69_37n	1	known	silent	c.423	p.S141	0.105	pirsf_tRNA_splic_SEN34	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN34,tigrfam_tRNA_splic	-	no_errors	TSEN34	HGNC	ENSG00000170892	60	0	0	35	5	12.5	-	-	-	C	54695751	G	C	54695751	2	2	312	1	0	0	0	0	0	0	0	1	16709	1045	37	3		3	TSEN34	19	54695751	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	39388	54695751	4433232	647	35026										
ZNF628	0	genome.wustl.edu	37	chr19	55995407	55995407	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatggcgaacagactcgactCtgcgtacaggaggtagaaac	13	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	55995407	55995407	C	T	SNP	ZNF628	ENST00000391718	human	ensembl	69_37n	1	known	silent	c.2835	p.L945	0.792	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483	24	0	0	23	7	23.33	-	-	-	T	55995407	C	T	55995407	2	4	312	1	0	0	0	0	0	0	0	1	18148	900	32	2		2	ZNF628	19	55995407	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1299656	55995407	3133576	648	35027										
ZNF667	0	genome.wustl.edu	37	chr19	56953810	56953810	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctgatgaagtaggatggatGagatctgtctgaaagctttt	12	4	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	56953810	56953810	G	A	SNP	ZNF667	ENST00000342634	human	ensembl	69_37n	-1	known	missense	c.938	p.S313L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046	384	0	0	238	27	10.19	-	-	-	A	56953810	G	A	56953810	3	1	312	1	0	0	0	0	1	0	0	0	18170	1294	45	2	1282	2	ZNF667	19	56953810	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	958403	56953810	2175173	649	35028										
VN1R1	0	genome.wustl.edu	37	chr19	57967296	57967296	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tgggccattcactaatagaaGaacagatgcattcatcaaga	8	8	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	57967296	57967296	G	C	SNP	VN1R1	ENST00000321039	human	ensembl	69_37n	-1	known	missense	c.559	p.L187V	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R1	HGNC	ENSG00000178201	233	0	0	155	19	10.92	-	-	-	C	57967296	G	C	57967296	3	2	312	1	0	0	0	0	1	0	0	0	17275	942	33	2	506	2	VN1R1	19	57967296	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1013486	57967296	1161687	650	35029										
ZIK1	0	genome.wustl.edu	37	chr19	58102291	58102291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cattcttaatcaacaccgaaGaattcacactggagcaaagc	6	11	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	58102291	58102291	G	A	SNP	ZIK1	ENST00000307468	human	ensembl	69_37n	1	known	missense	c.1112	p.R371K	0.074	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649	213	0	0	129	23	15.13	-	-	-	A	58102291	G	A	58102291	3	1	312	1	0	0	0	0	1	0	0	0	17779	942	33	2	1126	2	ZIK1	19	58102291	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	134995	58102291	1026692	651	35030										
ZNF211	0	genome.wustl.edu	37	chr19	58152161	58152161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttcaggacttccaaagaaGgttcatcttcccagaatgcc	8	11	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	58152161	58152161	G	C	SNP	ZNF211	ENST00000240731	human	ensembl	69_37n	1	known	missense	c.346	p.G116R	0.003	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417	199	0	0	167	33	16.42	-	-	-	C	58152161	G	C	58152161	3	2	312	1	0	0	0	0	1	0	0	0	17863	1000	35	4	360	4	ZNF211	19	58152161	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	49870	58152161	976822	652	35031										
ZNF256	0	genome.wustl.edu	37	chr19	58452716	58452716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacattcataaggccttgctCcagtatgaactttccagtgt	7	11	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	58452716	58452716	C	T	SNP	ZNF256	ENST00000282308	human	ensembl	69_37n	-1	known	missense	c.1460	p.G487E	0.991	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454	215	0	0	110	28	20	-	-	-	T	58452716	C	T	58452716	3	4	312	1	0	0	0	0	1	0	0	0	17895	855	30	2	427	2	ZNF256	19	58452716	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	300555	58452716	676267	653	35032										
ZNF329	0	genome.wustl.edu	37	chr19	58639365	58639365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctccctgctatggagtctCtgatgtactgccaggtgaga	11	12	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	58639365	58639365	C	G	SNP	ZNF329	ENST00000358067	human	ensembl	69_37n	-1	known	missense	c.1506	p.Q502H	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894	132	0	0	116	26	18.31	-	-	-	G	58639365	C	G	58639365	3	3	312	1	0	0	0	0	1	0	0	0	17943	912	32	2	123	2	ZNF329	19	58639365	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	186649	58639365	489618	654	35033										
ZNF544	0	genome.wustl.edu	37	chr19	58773307	58773307	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	attgaatgcagaaaatccttCaggtggaactctaacctcat	7	9	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	19	58773307	58773307	C	T	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	silent	c.1335	p.F445	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	219	0	0	129	20	13.42	-	-	-	T	58773307	C	T	58773307	2	4	312	1	0	0	0	0	0	0	0	1	18073	825	29	2		2	ZNF544	19	58773307	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	133942	58773307	355676	655	35034										
CRNKL1	0	genome.wustl.edu	37	chr20	20026077	20026077	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggcaaaataagcatgtttttCttcaaagcgggcatacttga	9	7	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	20026077	20026077	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1159	p.E387K	1.000	pfam_HAT,smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	262	0	0	128	21	14.09	-	-	-	T	20026077	C	T	20026077	3	4	312	1	0	0	0	0	1	0	0	0	3921	922	32	2	1423	2	CRNKL1	20	20026077	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09		20026077	42999443	656	35035										
CST8	0	genome.wustl.edu	37	chr20	23473604	23473604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctaaccaacaggtcacaaatCttctggaataccttattgat	5	10	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	23473604	23473604	C	G	SNP	CST8	ENST00000246012	human	ensembl	69_37n	1	known	missense	c.241	p.L81V	0.010	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST8	HGNC	ENSG00000125815	117	0	0	60	7	10.45	-	-	-	G	23473604	C	G	23473604	3	3	312	1	0	0	0	0	1	0	0	0	4010	913	32	2	247	2	CST8	20	23473604	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3447527	23473604	39551916	657	35036										
REM1	0	genome.wustl.edu	37	chr20	30064438	30064438	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaaaccttcacctgccccaGatgattggtcttctgaatcc	7	13	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	30064438	30064438	G	C	SNP	REM1	ENST00000201979	human	ensembl	69_37n	1	known	missense	c.190	p.D64H	0.001	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320	183	0	0	79	21	21	-	-	-	C	30064438	G	C	30064438	3	2	312	1	0	0	0	0	1	0	0	0	13305	942	33	2	192	2	REM1	20	30064438	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6590834	30064438	32961082	658	35037										
TPX2	0	genome.wustl.edu	37	chr20	30363692	30363692	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaagtttctaaaaagtactGaggagcaagagctggagaag	13	4	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	30363692	30363692	G	A	SNP	TPX2	ENST00000340513	human	ensembl	69_37n	1	known	missense	c.631	p.E211K	1.000	NULL	pfam_TPX2_importin,pfam_Aurora-A-bd,pfam_Xklp2_targeting_prot	-	no_errors	TPX2	HGNC	ENSG00000088325	305	0	0	132	18	12	-	-	-	A	30363692	G	A	30363692	3	1	312	1	0	0	0	0	1	0	0	0	16528	1291	45	2	653	2	TPX2	20	30363692	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	299254	30363692	32661828	659	35038										
NDRG3	0	genome.wustl.edu	37	chr20	35293685	35293685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttggcccagtatgggtctttCgatctccaggtctctgcgtc	11	12	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	35293685	35293685	C	T	SNP	NDRG3	ENST00000349004	human	ensembl	69_37n	-1	known	missense	c.712	p.E238K	1.000	pfam_Ndr,pfam_AB_hydrolase_1	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079	379	0	0	200	30	12.99	-	-	-	T	35293685	C	T	35293685	3	4	312	1	0	0	0	0	1	0	0	0	10325	893	31	1	439	1	NDRG3	20	35293685	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4929993	35293685	27731835	660	35039										
DSN1	0	genome.wustl.edu	37	chr20	35399512	35399512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttgattcatctccagggagGcagatgttttagcaaacact	9	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	35399512	35399512	G	A	SNP	DSN1	ENST00000373745	human	ensembl	69_37n	-1	known	missense	c.119	p.A40V	0.992	NULL	pfam_Mtw1_DSN1	-	no_errors	DSN1	HGNC	ENSG00000149636	123	0	0	74	9	10.84	-	-	-	A	35399512	G	A	35399512	3	1	312	1	0	0	0	0	1	0	0	0	4815	1203	42	4	987	4	DSN1	20	35399512	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	105827	35399512	27626008	661	35040										
FAM83D	0	genome.wustl.edu	37	chr20	37580527	37580527	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttagtgaggaagactacttCagcagccacagggacgagct	13	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	37580527	37580527	C	T	SNP	FAM83D	ENST00000217429	human	ensembl	69_37n	1	known	silent	c.1212	p.F404	0.000	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447	66	0	0	40	8	16.33	-	-	-	T	37580527	C	T	37580527	2	4	312	1	0	0	0	0	0	0	0	1	5681	825	29	2		2	FAM83D	20	37580527	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2181015	37580527	25444993	662	35041										
TTPAL	0	genome.wustl.edu	37	chr20	43108995	43108995	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cttcaataacttgaagccatCagccttaaaagatgtccttg	6	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	43108995	43108995	C	T	SNP	TTPAL	ENST00000262605	human	ensembl	69_37n	1	known	missense	c.356	p.S119L	0.990	superfamily_CRAL/TRIO_N_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	44	0	0	28	8	21.62	-	-	-	T	43108995	C	T	43108995	3	4	312	1	0	0	0	0	1	0	0	0	16834	838	29	2	358	2	TTPAL	20	43108995	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5528468	43108995	19916525	663	35042										
DBNDD2	0	genome.wustl.edu	37	chr20	44037637	44037637	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccagagccggatgtcaggctCtgaaacgaggctacaaggct	13	11	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	44037637	44037637	C	G	SNP	DBNDD2	ENST00000443296	human	ensembl	69_37n	1	putative	missense	c.515	p.S172C	0.065	NULL	pfam_Dysbindin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DBNDD2	HGNC	ENSG00000244274	112	0	0	81	14	14.74	-	-	-	G	44037637	C	G	44037637	3	3	312	1	0	0	0	0	1	0	0	0	4286	900	32	2	342	2	DBNDD2	20	44037637	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	928642	44037637	18987883	664	35043										
PIGT	0	genome.wustl.edu	37	chr20	44044963	44044963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttccgcacgcgctgggattCggagcttcagcgggaaggag	17	10	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	44044963	44044963	C	G	SNP	PIGT	ENST00000279036	human	ensembl	69_37n	1	known	missense	c.167	p.S56W	1.000	pfam_Gpi16	pfam_Gpi16	-	no_errors	PIGT	HGNC	ENSG00000124155	42	0	0	53	6	10.17	-	-	-	G	44044963	C	G	44044963	3	3	312	1	0	0	0	0	1	0	0	0	11973	893	31	3	169	3	PIGT	20	44044963	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	7326	44044963	18980557	665	35044										
NCOA5	0	genome.wustl.edu	37	chr20	44691046	44691046	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gccactctggatcagggtatCcagagccttctgtacacttg	10	12	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	44691046	44691046	C	G	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.1633	p.D545H	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	87	0	0	80	9	10.11	-	-	-	G	44691046	C	G	44691046	3	3	312	1	0	0	0	0	1	0	0	0	10304	855	30	2	110	2	NCOA5	20	44691046	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	646083	44691046	18334474	666	35045										
HRH3	0	genome.wustl.edu	37	chr20	60794791	60794791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	atttaccgacgaggaagtcgGagatggcgaggttgagcagg	17	6	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	60794791	60794791	G	C	SNP	HRH3	ENST00000317393	human	ensembl	69_37n	-1	known	missense	c.236	p.S79C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Histamine_H3_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180	33	0	0	35	7	16.67	-	-	-	C	60794791	G	C	60794791	3	2	312	1	0	0	0	0	1	0	0	0	7408	1174	41	2	1113	2	HRH3	20	60794791	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	16103745	60794791	2230729	667	35046										
SAMD10	0	genome.wustl.edu	37	chr20	62608706	62608706	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	caagtggcaggggatgctctCagctgacaccgtgtgctcca	13	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	62608706	62608706	C	T	SNP	SAMD10	ENST00000369886	human	ensembl	69_37n	-1	known	missense	c.145	p.E49K	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD10	HGNC	ENSG00000130590	174	0	0	143	31	17.71	-	-	-	T	62608706	C	T	62608706	3	4	312	1	0	0	0	0	1	0	0	0	13901	835	29	2	479	2	SAMD10	20	62608706	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1813915	62608706	416814	668	35047										
MYT1	0	genome.wustl.edu	37	chr20	62871771	62871771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggacctcctggagagcatCaagcaggctgtgaggggcat	15	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	20	62871771	62871771	C	G	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.3417	p.I1139M	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	102	0	0	66	22	25	-	-	-	G	62871771	C	G	62871771	3	3	312	1	0	0	0	0	1	0	0	0	10178	816	29	2	3418	2	MYT1	20	62871771	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	263065	62871771	153749	669	35048										
MORC3	0	genome.wustl.edu	37	chr21	37732314	37732314	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taaagtggcggaaattacctGatgggatggatcaacttcct	11	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	37732314	37732314	G	C	SNP	MORC3	ENST00000400485	human	ensembl	69_37n	1	known	missense	c.1270	p.D424H	1.000	pfam_Znf_CW,pfscan_Znf_CW	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	292	0	0	162	27	14.29	-	-	-	C	37732314	G	C	37732314	3	2	312	1	0	0	0	0	1	0	0	0	9775	1290	45	2	1312	2	MORC3	21	37732314	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		37732314	10397581	670	35049										
MORC3	0	genome.wustl.edu	37	chr21	37741289	37741289	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tataaaatttttttcagcttGaaacggagactttctactcg	6	7	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	37741289	37741289	G	C	SNP	MORC3	ENST00000400485	human	ensembl	69_37n	1	known	missense	c.1623	p.L541F	0.102	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	85	0	0	50	6	10.71	-	-	-	C	37741289	G	C	37741289	3	2	312	1	0	0	0	0	1	0	0	0	9775	1281	45	2	1681	2	MORC3	21	37741289	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	8975	37741289	10388606	671	35050										
HLCS	0	genome.wustl.edu	37	chr21	38139574	38139574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagcccatttcctgcggtgtCtgaaacatcagcctgccgaa	9	13	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	38139574	38139574	C	G	SNP	HLCS	ENST00000336648	human	ensembl	69_37n	-1	known	missense	c.1464	p.Q488H	0.997	pfam_BPL_LipA_LipB,tigrfam_Biotin_CoA_COase_ligase	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267	104	0	0	63	10	13.7	-	-	-	G	38139574	C	G	38139574	3	3	312	1	0	0	0	0	1	0	0	0	7264	912	32	2	736	2	HLCS	21	38139574	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	398285	38139574	9990321	672	35051										
TTC3	0	genome.wustl.edu	37	chr21	38538681	38538681	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctgcctattttgagggtcatCatttgaatgctgagaatgtt	10	6	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	38538681	38538681	C	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.4165	p.H1389Y	0.001	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	226	0	0	141	16	10.19	-	-	-	T	38538681	C	T	38538681	3	4	312	1	0	0	0	0	1	0	0	0	16794	826	29	2	4291	2	TTC3	21	38538681	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	399107	38538681	9591214	673	35052										
IGSF5	0	genome.wustl.edu	37	chr21	41137565	41137565	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtctcccagggctggaagctCatcatgtgggctctcagtga	13	11	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	41137565	41137565	C	G	SNP	IGSF5	ENST00000380588	human	ensembl	69_37n	1	novel	silent	c.204	p.L68	0.361	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF5	HGNC	ENSG00000183067	99	0	0	52	9	14.75	-	-	-	G	41137565	C	G	41137565	2	3	312	1	0	0	0	0	0	0	0	1	7656	813	29	2		2	IGSF5	21	41137565	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2598884	41137565	6992330	674	35053										
PRDM15	0	genome.wustl.edu	37	chr21	43280475	43280475	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctcccatcttcagccatctCtgacacctgtcaggatacaa	6	15	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	43280475	43280475	C	G	SNP	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	missense	c.898	p.E300Q	0.116	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	125	0	0	63	21	25	-	-	-	G	43280475	C	G	43280475	3	3	312	1	0	0	0	0	1	0	0	0	12537	922	32	2	3721	2	PRDM15	21	43280475	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2142910	43280475	4849420	675	35054										
PRMT2	0	genome.wustl.edu	37	chr21	48064220	48064220	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	taacttttttttttccagctCagttttttgagaggagaaaa	7	5	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	21	48064220	48064220	C	A	SNP	PRMT2	ENST00000355680	human	ensembl	69_37n	1	known	silent	c.147	p.L49	0.980	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	127	0	0	60	14	18.92	-	-	-	A	48064220	C	A	48064220	2	1	312	1	0	0	0	0	0	0	0	1	12618	813	29	2		2	PRMT2	21	48064220	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4783745	48064220	65675	676	35055										
BCL2L13	0	genome.wustl.edu	37	chr22	18210154	18210154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaagcccgtgccgccgtctGagggcaagtctagactgtcc	13	13	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	18210154	18210154	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	69_37n	1	known	missense	c.1312	p.E438K	0.003	NULL	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L13	HGNC	ENSG00000099968	81	0	0	38	5	11.63	-	-	-	A	18210154	G	A	18210154	3	1	312	1	0	0	0	0	1	0	0	0	1375	1291	45	2	1334	2	BCL2L13	22	18210154	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		18210154	33094412	677	35056										
BCR	0	genome.wustl.edu	37	chr22	23655135	23655135	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacgccatcgcaggcacgctGaagctgtacttccgtgagct	11	13	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	23655135	23655135	G	T	SNP	BCR	ENST00000305877	human	ensembl	69_37n	1	known	silent	c.3384	p.L1128	0.996	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	68	0	0	23	8	25.81	-	-	-	T	23655135	G	T	23655135	2	4	312	1	0	0	0	0	0	0	0	1	1392	1277	45	2		2	BCR	22	23655135	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5444981	23655135	27649431	678	35057										
MMP11	0	genome.wustl.edu	37	chr22	24121532	24121532	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cccgacccatctgatgggctGagtgcccgcaaccgacagaa	11	15	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	24121532	24121532	G	C	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	1	known	silent	c.267	p.L89	0.010	pirsf_Pept_M10A_matrix_strom	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	18	0	0	12	5	29.41	-	-	-	C	24121532	G	C	24121532	2	2	312	1	0	0	0	0	0	0	0	1	9721	1277	45	2		2	MMP11	22	24121532	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	466397	24121532	27183034	679	35058										
SMARCB1	0	genome.wustl.edu	37	chr22	24129447	24129447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agttctacatgatcggctccGaggtagcccggggcgcgttc	14	12	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	24129447	24129447	G	A	SNP	SMARCB1	ENST00000263121	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	1.000	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956	22	0	0	9	7	43.75	-	-	-	A	24129447	G	A	24129447	3	1	312	1	0	0	0	0	1	0	0	0	14863	1059	37	1	93	1	SMARCB1	22	24129447	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7915	24129447	27175119	680	35059										
APOL4	0	genome.wustl.edu	37	chr22	36587940	36587940	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agattcttcagagcttcataGagagcatctgcctcttccct	7	12	5	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	36587940	36587940	G	C	SNP	APOL4	ENST00000352371	human	ensembl	69_37n	-1	known	silent	c.237	p.L79	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL4	HGNC	ENSG00000100336	150	0	0	68	9	11.54	-	-	-	C	36587940	G	C	36587940	2	2	312	1	0	0	0	0	0	0	0	1	810	929	33	2		2	APOL4	22	36587940	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12458493	36587940	14716626	681	35060										
ENTHD1	0	genome.wustl.edu	37	chr22	40139707	40139707	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatctgatctgagctcccctCagaagactgggggacctggg	14	11	3	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	40139707	40139707	C	T	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	missense	c.1801	p.E601K	0.000	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	128	0	0	76	9	10.59	-	-	-	T	40139707	C	T	40139707	3	4	312	1	0	0	0	0	1	0	0	0	5174	835	29	2	26	2	ENTHD1	22	40139707	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3551767	40139707	11164859	682	35061										
EFCAB6	0	genome.wustl.edu	37	chr22	44011765	44011765	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aagatactgatgagcctgctCacaagctagttctgaatccg	9	10	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	44011765	44011765	C	G	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.2503	p.E835Q	0.995	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	270	0	0	118	15	11.28	-	-	-	G	44011765	C	G	44011765	3	3	312	1	0	0	0	0	1	0	0	0	4974	835	29	2	2050	2	EFCAB6	22	44011765	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3872058	44011765	7292801	683	35062										
CELSR1	0	genome.wustl.edu	37	chr22	46859955	46859955	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatctgctcctgcaggtcctCcgacgggaagaactggccgc	13	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	46859955	46859955	C	G	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.3832	p.E1278Q	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	62	0	0	36	6	14.29	-	-	-	G	46859955	C	G	46859955	3	3	312	1	0	0	0	0	1	0	0	0	3250	864	30	2	5348	2	CELSR1	22	46859955	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2848190	46859955	4444611	684	35063										
MAPK12	0	genome.wustl.edu	37	chr22	50688962	50688962	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catactctgggctgcatgcaGatgggcaggcaggagaggca	16	9	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	50688962	50688962	G	A	SNP	MAPK12	ENST00000497036	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAPK12	HGNC	ENSG00000188130	35	0	0	19	8	29.63	-	-	-	A	50688962	G	A	50688962	1	1	312	0	1	0	0	0	0	0	0	0	9345	957	33	2		2	MAPK12	22	50688962	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3829007	50688962	615604	685	35064										
SHANK3	0	genome.wustl.edu	37	chr22	51143274	51143274	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gagggccgggctgcgcacggGagacttcctcatcgaggtga	17	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	22	51143274	51143274	G	C	SNP	SHANK3	ENST00000262795	human	ensembl	69_37n	1	known	missense	c.1928	p.G643A	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	123	0	0	75	13	14.77	-	-	-	C	51143274	G	C	51143274	3	2	312	1	0	0	0	0	1	0	0	0	14355	1174	41	2	1990	2	SHANK3	22	51143274	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	454312	51143274	161292	686	35065										
ASMTL	0	genome.wustl.edu	37	chrX	1551179	1551179	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cacatgggctccccgctgtgGacgtattcccagagcagctc	11	15	0	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	1551179	1551179	G	A	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	silent	c.492	p.V164	0.999	pfam_Maf,tigrfam_Maf	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	196	0	0	137	28	16.97	-	-	-	A	1551179	G	A	1551179	2	1	312	1	0	0	0	0	0	0	0	1	1050	1161	41	2		2	ASMTL	23	1551179	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09		1551179	153719381	687	35066										
P2RY8	0	genome.wustl.edu	37	chrX	1585257	1585257	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agcatcaggtccgtgacgctCaggttgatcatgaagatgac	12	9	3	5			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	1585257	1585257	C	G	SNP	P2RY8	ENST00000381297	human	ensembl	69_37n	-1	known	silent	c.195	p.L65	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162	119	0	0	59	9	13.24	-	-	-	G	1585257	C	G	1585257	2	3	312	1	0	0	0	0	0	0	0	1	11428	813	29	2		2	P2RY8	23	1585257	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	34078	1585257	153685303	688	35067										
PHKA2	0	genome.wustl.edu	37	chrX	18911535	18911535	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	acaggggatcttgggggacaGaaggttcccagtaaggctag	16	7	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	18911535	18911535	G	C	SNP	PHKA2	ENST00000469485	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	73	0	0	22	13	37.14	-	-	-	C	18911535	G	C	18911535	1	2	312	0	1	0	0	0	0	0	0	0	11918	957	33	2		2	PHKA2	23	18911535	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	17326278	18911535	136359025	689	35068										
KLHL15	0	genome.wustl.edu	37	chrX	24024795	24024795	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gatggaggaacagaatccttCcacgtcccctgccatgaatc	9	13	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	24024795	24024795	C	A	SNP	KLHL15	ENST00000328046	human	ensembl	69_37n	-1	known	nonsense	c.16	p.E6*	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	58	0	0	37	7	15.91	-	-	-	A	24024795	C	A	24024795	4	1	312	1	0	0	0	0	0	1	0	0	8424	864	30	2	1806	2	KLHL15	23	24024795	Nonsense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5113260	24024795	131245765	690	35069										
RPGR	0	genome.wustl.edu	37	chrX	38146233	38146233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctttctcccccttctccctCtcctcatcttgccagtgttc	3	19	6	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	38146233	38146233	C	G	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.2019	p.E673D	0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	1052	0	0	380	172	31.16	-	-	-	G	38146233	C	G	38146233	3	3	312	1	0	0	0	0	1	0	0	0	13634	912	32	2	2002	2	RPGR	23	38146233	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	14121438	38146233	117124327	691	35070										
MED14	0	genome.wustl.edu	37	chrX	40560457	40560457	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatgattcgtttcatatcatCattcacagacttctccatgt	4	10	5	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	40560457	40560457	C	G	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.1450	p.D484H	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	319	0	0	139	18	11.46	-	-	-	G	40560457	C	G	40560457	3	3	312	1	0	0	0	0	1	0	0	0	9503	826	29	2	2994	2	MED14	23	40560457	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2414224	40560457	114710103	692	35071										
EFHC2	0	genome.wustl.edu	37	chrX	44094563	44094563	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tctcttacctgaattcctctCtataggttcaaacactgaaa	4	11	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	44094563	44094563	C	G	SNP	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	missense	c.1411	p.E471Q	0.001	pfam_DUF1126,smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	167	0	0	82	13	13.68	-	-	-	G	44094563	C	G	44094563	3	3	312	1	0	0	0	0	1	0	0	0	4982	922	32	2	866	2	EFHC2	23	44094563	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	3534106	44094563	111175997	693	35072										
ZNF41	0	genome.wustl.edu	37	chrX	47308438	47308438	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtttttcatagtggtcatgtTcacaggaatttgctcctgtt	9	7	3	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	47308438	47308438	T	C	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.761	p.E254G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	389	0	0	227	28	10.98	-	-	-	C	47308438	T	C	47308438	3	2	312	1	0	0	0	0	1	0	0	0	17985	1783	62	5	1612	5	ZNF41	23	47308438	Missense_Mutation	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09	3213875	47308438	107962122	694	35073										
HSD17B10	0	genome.wustl.edu	37	chrX	53459270	53459270	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacgtcttgctagccaccgcGatgcctgcacagttgacagc	10	14	1	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	53459270	53459270	G	A	SNP	HSD17B10	ENST00000168216	human	ensembl	69_37n	-1	known	silent	c.282	p.I94	0.994	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect,prints_DHB_DH	-	no_errors	HSD17B10	HGNC	ENSG00000072506	252	0	0	116	27	18.88	-	-	-	A	53459270	G	A	53459270	2	1	312	1	0	0	0	0	0	0	0	1	7430	1048	37	1		1	HSD17B10	23	53459270	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6150832	53459270	101811290	695	35074										
VSIG4	0	genome.wustl.edu	37	chrX	65247917	65247917	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aaggggtatgtcatggttgtAggtgcctcagtcttggtctt	14	6	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	65247917	65247917	A	G	SNP	VSIG4	ENST00000427538	human	ensembl	69_37n	-1	known	missense	c.511	p.Y171H	0.005	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VSIG4	HGNC	ENSG00000155659	572	1	0.17	287	47	14.07	-	-	-	G	65247917	A	G	65247917	3	3	312	1	0	0	0	0	1	0	0	0	17322	407	15	5	491	5	VSIG4	23	65247917	Missense_Mutation	SNP	A	TCGA-AO-A03M-01B-11D-A10M-09	11788647	65247917	90022643	696	35075										
EDA	0	genome.wustl.edu	37	chrX	69177016	69177016	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgatcctttatcacttctGaattatttgttagtaaaagt	6	5	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	69177016	69177016	G	A	SNP	EDA	ENST00000502251	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	EDA	HGNC	ENSG00000158813	213	0	0	86	11	11.34	-	-	-	A	69177016	G	A	69177016	1	1	312	0	1	0	0	0	0	0	0	0	4938	1285	45	2		2	EDA	23	69177016	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	3929099	69177016	86093544	697	35076										
OGT	0	genome.wustl.edu	37	chrX	70793552	70793552	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aacaatacacaatggaactaGagcggctctatctacagatg	8	9	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	70793552	70793552	G	C	SNP	OGT	ENST00000373719	human	ensembl	69_37n	1	known	missense	c.3049	p.E1017Q	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	246	0	0	113	16	12.4	-	-	-	C	70793552	G	C	70793552	3	2	312	1	0	0	0	0	1	0	0	0	10920	943	33	2	3135	2	OGT	23	70793552	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1616536	70793552	84477008	698	35077										
ERCC6L	0	genome.wustl.edu	37	chrX	71428542	71428542	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gttgcttctttggcctctttCacatatctatagaaaaaaaa	5	8	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	71428542	71428542	C	T	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	silent	c.75	p.V25	0.990	pfscan_TPR-contain_dom	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	259	0	0	139	18	11.39	-	-	-	T	71428542	C	T	71428542	2	4	312	1	0	0	0	0	0	0	0	1	5255	813	29	2		2	ERCC6L	23	71428542	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	634990	71428542	83842018	699	35078										
RLIM	0	genome.wustl.edu	37	chrX	73812681	73812681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	agaacgtcttgcagatggctCattttcattctctgaatttt	7	8	4	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	73812681	73812681	C	G	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	missense	c.469	p.E157Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	353	0	0	184	37	16.74	-	-	-	G	73812681	C	G	73812681	3	3	312	1	0	0	0	0	1	0	0	0	13476	835	29	2	1409	2	RLIM	23	73812681	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	2384139	73812681	81457879	700	35079										
MAGEE1	0	genome.wustl.edu	37	chrX	75649826	75649826	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gtagctgagctgttgcagttCctgctggtgaaggatcagag	15	7	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	75649826	75649826	C	T	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	silent	c.1503	p.F501	0.588	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	87	0	0	68	8	10.53	-	-	-	T	75649826	C	T	75649826	2	4	312	1	0	0	0	0	0	0	0	1	9256	854	30	2		2	MAGEE1	23	75649826	Silent	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1837145	75649826	79620734	701	35080										
SYTL4	0	genome.wustl.edu	37	chrX	99931013	99931013	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccagggctggacctgcagaaGaggacagggactcataaacc	13	11	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	99931013	99931013	G	A	SNP	SYTL4	ENST00000491602	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SYTL4	HGNC	ENSG00000102362	152	0	0	77	14	15.38	-	-	-	A	99931013	G	A	99931013	1	1	312	0	1	0	0	0	0	0	0	0	15577	957	33	2		2	SYTL4	23	99931013	RNA	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	24281187	99931013	55339547	702	35081										
CENPI	0	genome.wustl.edu	37	chrX	100382503	100382503	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcagaagtggaattctctctCagttataccagtgctcaatt	7	9	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	100382503	100382503	C	T	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	missense	c.923	p.S308L	0.576	pfam_Centromere_CenpI	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	138	0	0	76	10	11.63	-	-	-	T	100382503	C	T	100382503	3	4	312	1	0	0	0	0	1	0	0	0	3262	838	29	2	957	2	CENPI	23	100382503	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	451490	100382503	54888057	703	35082										
CENPI	0	genome.wustl.edu	37	chrX	100403010	100403010	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	catcaatggttggttgcctgTggacgtccaaaccctttggg	12	10	1	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	100403010	100403010	T	C	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	missense	c.1954	p.W652R	1.000	NULL	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	293	0	0	134	24	15.19	-	-	-	C	100403010	T	C	100403010	3	2	312	1	0	0	0	0	1	0	0	0	3262	1696	59	5	2024	5	CENPI	23	100403010	Missense_Mutation	SNP	T	TCGA-AO-A03M-01B-11D-A10M-09	20507	100403010	54867550	704	35083										
BHLHB9	0	genome.wustl.edu	37	chrX	102004803	102004803	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctgcatccagaccatagatGagattagacgtcaaatcagg	9	10	2	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	102004803	102004803	G	A	SNP	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	missense	c.880	p.E294K	0.960	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	127	0	0	55	7	11.29	-	-	-	A	102004803	G	A	102004803	3	1	312	1	0	0	0	0	1	0	0	0	1425	1291	45	2	882	2	BHLHB9	23	102004803	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	1601793	102004803	53265757	705	35084										
FAM199X	0	genome.wustl.edu	37	chrX	103420342	103420342	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tggaacaagtgttgccagctCagaaggcagtgaggagctgt	15	7	1	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	103420342	103420342	C	T	SNP	FAM199X	ENST00000493442	human	ensembl	69_37n	1	known	missense	c.236	p.S79L	1.000	NULL	NULL	-	no_errors	FAM199X	HGNC	ENSG00000123575	462	0	0	188	37	16.44	-	-	-	T	103420342	C	T	103420342	3	4	312	1	0	0	0	0	1	0	0	0	5572	838	29	2	242	2	FAM199X	23	103420342	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1415539	103420342	51850218	706	35085										
IRS4	0	genome.wustl.edu	37	chrX	107976538	107976538	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacttcaatgtagtcaccctCttcctcaatagcattgctac	4	13	4	0			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	107976538	107976538	C	G	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.3037	p.E1013Q	0.049	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	102	0	0	42	11	20.75	-	-	-	G	107976538	C	G	107976538	3	3	312	1	0	0	0	0	1	0	0	0	7896	922	32	2	740	2	IRS4	23	107976538	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	4556196	107976538	47294022	707	35086										
RGAG1	0	genome.wustl.edu	37	chrX	109696097	109696097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gcagatgaattccccaacctCtgatgtgatgtccacaccaa	7	13	1	4			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	109696097	109696097	C	T	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.2252	p.S751F	0.698	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	229	0	0	131	21	13.82	-	-	-	T	109696097	C	T	109696097	3	4	312	1	0	0	0	0	1	0	0	0	13357	913	32	2	2254	2	RGAG1	23	109696097	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1719559	109696097	45574463	708	35087										
WDR44	0	genome.wustl.edu	37	chrX	117527075	117527075	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gacaccttactccagagcctGatatagtggctagtacaaag	9	10	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	117527075	117527075	G	C	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.667	p.D223H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	178	0	0	97	11	10.19	-	-	-	C	117527075	G	C	117527075	3	2	312	1	0	0	0	0	1	0	0	0	17393	1290	45	2	681	2	WDR44	23	117527075	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	7830978	117527075	37743485	709	35088										
SH2D1A	0	genome.wustl.edu	37	chrX	123480597	123480597	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tatttgctgagggacagcgaGagcgtgccaggcgtgtactg	16	8	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	123480597	123480597	G	A	SNP	SH2D1A	ENST00000371139	human	ensembl	69_37n	1	known	silent	c.105	p.E35	1.000	pfam_SH2,smart_SH2,pirsf_SH2_prot_1A,prints_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pirsf_SH2_prot_1A,prints_SH2,pfscan_SH2	-	no_errors	SH2D1A	HGNC	ENSG00000183918	315	0	0	170	30	15	-	-	-	A	123480597	G	A	123480597	2	1	312	1	0	0	0	0	0	0	0	1	14318	933	33	2		2	SH2D1A	23	123480597	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	5953522	123480597	31789963	710	35089										
OCRL	0	genome.wustl.edu	37	chrX	128723901	128723901	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcgagaactcttaaaattctCtgaatacaatagcgtcaatg	6	8	3	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	128723901	128723901	C	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.2549	p.S850F	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	206	0	0	110	20	15.38	-	-	-	T	128723901	C	T	128723901	3	4	312	1	0	0	0	0	1	0	0	0	10896	913	32	2	2639	2	OCRL	23	128723901	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	5243304	128723901	26546659	711	35090										
GPR112	0	genome.wustl.edu	37	chrX	135431750	135431750	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ttcattatcaacatctttaaGagctatcacttccacattgg	4	10	4	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	135431750	135431750	G	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.5885	p.R1962K	0.012	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	170	1	0.58	83	10	10.75	-	-	-	A	135431750	G	A	135431750	3	1	312	1	0	0	0	0	1	0	0	0	6679	942	33	2	5895	2	GPR112	23	135431750	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	6707849	135431750	19838810	712	35091										
AFF2	0	genome.wustl.edu	37	chrX	148062291	148062291	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	aatgcttcaaaagtcgcacaGataccctctccatgggtaag	8	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	148062291	148062291	G	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.3594	p.Q1198H	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	180	0	0	63	14	18.18	-	-	-	C	148062291	G	C	148062291	3	2	312	1	0	0	0	0	1	0	0	0	357	933	33	2	3723	2	AFF2	23	148062291	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	12630541	148062291	7208269	713	35092										
IDS	0	genome.wustl.edu	37	chrX	148564415	148564415	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	gctagaaattcatcaggattGaagccaacccacacagtata	7	10	2	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	148564415	148564415	G	A	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.1515	p.F505	0.009	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	138	0	0	87	10	10.31	-	-	-	A	148564415	G	A	148564415	2	1	312	1	0	0	0	0	0	0	0	1	7557	1281	45	2		2	IDS	23	148564415	Silent	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	502124	148564415	6706145	714	35093										
PASD1	0	genome.wustl.edu	37	chrX	150789405	150789405	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ctctcctctcctgccaggctGagattgtgggcaaaaaatta	9	11	2	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	150789405	150789405	G	A	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	missense	c.211	p.E71K	0.036	smart_PAS,pfscan_PAS	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	185	0	0	58	14	19.18	-	-	-	A	150789405	G	A	150789405	3	1	312	1	0	0	0	0	1	0	0	0	11544	1291	45	2	225	2	PASD1	23	150789405	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	2224990	150789405	4481155	715	35094										
PNMA5	0	genome.wustl.edu	37	chrX	152159224	152159224	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ccctcgctgatccaagagctCcagcttgcccctgagggcgg	12	16	0	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	152159224	152159224	C	G	SNP	PNMA5	ENST00000361887	human	ensembl	69_37n	-1	known	missense	c.919	p.E307Q	0.000	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883	32	0	0	26	7	21.21	-	-	-	G	152159224	C	G	152159224	3	3	312	1	0	0	0	0	1	0	0	0	12230	864	30	2	431	2	PNMA5	23	152159224	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	1369819	152159224	3111336	716	35095										
PNMA3	0	genome.wustl.edu	37	chrX	152226004	152226004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tacagatgtggcaggtgcccGagggggaaaagaggcggagg	20	6	0	2			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	152226004	152226004	G	A	SNP	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	0.005	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	57	0	0	40	6	12.5	-	-	-	A	152226004	G	A	152226004	3	1	312	1	0	0	0	0	1	0	0	0	12229	1059	37	1	594	1	PNMA3	23	152226004	Missense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	66780	152226004	3044556	717	35096										
ARHGAP4	0	genome.wustl.edu	37	chrX	153176593	153176593	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	tcctgcttaccattgaggttGatgaagcgaatgcagctctc	10	10	1	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	153176593	153176593	G	C	SNP	ARHGAP4	ENST00000442172	human	ensembl	69_37n	-1	novel	nonsense	c.137	p.S46*	0.998	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP4	HGNC	ENSG00000089820	105	0	0	68	15	18.07	-	-	-	C	153176593	G	C	153176593	4	2	312	1	0	0	0	0	0	1	0	0	887	1280	45	2	1287	2	ARHGAP4	23	153176593	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	950589	153176593	2093967	718	35097										
GAB3	0	genome.wustl.edu	37	chrX	153940944	153940944	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	cctgttccaatgaacggtctGagtttgaccagctatcacat	8	11	2	3			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	153940944	153940944	G	C	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	nonsense	c.629	p.S210*	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	120	0	0	39	11	22	-	-	-	C	153940944	G	C	153940944	4	2	312	1	0	0	0	0	0	1	0	0	6199	1294	45	2	1162	2	GAB3	23	153940944	Nonsense_Mutation	SNP	G	TCGA-AO-A03M-01B-11D-A10M-09	764351	153940944	1329616	719	35098										
CLIC2	0	genome.wustl.edu	37	chrX	154528132	154528132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.693165969316597	497	3.49884693131362e-214	4.2530514777843	4.41774902148734	4.09476431751881	0.619475058406662	1	380	ggtttgttctaaaaactcctCaattttaatgaagtctgttt	6	6	3	1			TCGA-AO-A03M-01B-11D-A10M-09	TCGA-AO-A03M-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e641d5f2-b91b-45d8-94a6-73c965c90e0c	8a65e562-4ed9-4ae2-8bd2-446bca056f48	X	154528132	154528132	C	G	SNP	CLIC2	ENST00000369449	human	ensembl	69_37n	-1	known	missense	c.259	p.E87Q	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC2	HGNC	ENSG00000155962	312	0	0	144	23	13.77	-	-	-	G	154528132	C	G	154528132	3	3	312	1	0	0	0	0	1	0	0	0	3556	835	29	2	500	2	CLIC2	23	154528132	Missense_Mutation	SNP	C	TCGA-AO-A03M-01B-11D-A10M-09	587188	154528132	742428	720	35099										
TAS1R1	0	genome.wustl.edu	37	chr1	6639317	6639317	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ggcttcatactggccttcctCtacaatggcctcctctccat	6	16	3	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	6639317	6639317	C	G	SNP	TAS1R1	ENST00000333172	human	ensembl	69_37n	1	known	silent	c.2199	p.L733	0.279	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662	103	0	0	100	47	31.97	-	-	-	G	6639317	C	G	6639317	2	3	313	1	0	0	0	0	0	0	0	1	15654	900	32	2		2	TAS1R1	1	6639317	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		6639317	242611304	1	35100										
ECE1	0	genome.wustl.edu	37	chr1	21599264	21599264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	cccccagcgtgagtggccatCagggactgggttggccttga	15	12	1	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	21599264	21599264	C	T	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.421	p.D141N	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	159	0	0	148	84	36.21	-	-	-	T	21599264	C	T	21599264	3	4	313	1	0	0	0	0	1	0	0	0	4924	826	29	2	1955	2	ECE1	1	21599264	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	14959947	21599264	227651357	2	35101										
NOTCH2	0	genome.wustl.edu	37	chr1	120484236	120484236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tgtaactgttgacgtagtcaGagcaggtccctccattctta	9	10	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	120484236	120484236	G	C	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.2894	p.S965C	0.997	pirsf_Notch,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	70	0	0	105	24	18.6	-	-	-	C	120484236	G	C	120484236	3	2	313	1	0	0	0	0	1	0	0	0	10620	942	33	2	4589	2	NOTCH2	1	120484236	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	98884972	120484236	128766385	3	35102										
HRNR	0	genome.wustl.edu	37	chr1	152191378	152191378	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gaccgaccggagccagacccAtgtcggccatagctgggaga	14	13	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	152191378	152191378	A	C	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.2727	p.H909Q	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	74	0	0	102	104	50.49	-	-	-	C	152191378	A	C	152191378	3	2	313	1	0	0	0	0	1	0	0	0	7410	214	8	5	5829	5	HRNR	1	152191378	Missense_Mutation	SNP	A	TCGA-AO-A03N-01B-11D-A10M-09	31707142	152191378	97059243	4	35103										
DCST1	0	genome.wustl.edu	37	chr1	155018896	155018896	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tggtggtgctgtgtggcttgGactgggctctctactccatc	14	10	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	155018896	155018896	G	C	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	missense	c.1429	p.D477H	0.999	pfam_DC_STAMP-like	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	68	0	0	207	43	17.2	-	-	-	C	155018896	G	C	155018896	3	2	313	1	0	0	0	0	1	0	0	0	4333	1174	41	2	1475	2	DCST1	1	155018896	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	2827518	155018896	94231725	5	35104										
KIF14	0	genome.wustl.edu	37	chr1	200584610	200584610	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctggctagcgtagtgaggatGacattcatcaaaagaccaga	11	8	2	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	200584610	200584610	G	T	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.1240	p.H414N	0.988	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	159	0	0	179	68	27.53	-	-	-	T	200584610	G	T	200584610	3	4	313	1	0	0	0	0	1	0	0	0	8328	1290	45	2	3818	2	KIF14	1	200584610	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	45565714	200584610	48666011	6	35105										
PCNXL2	0	genome.wustl.edu	37	chr1	233388221	233388221	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gaagttaccctgtagattatCtgtctttgtctattgccctg	8	9	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	233388221	233388221	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.2007	p.Q669H	0.486	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	185	0	0	176	93	34.57	-	-	-	G	233388221	C	G	233388221	3	3	313	1	0	0	0	0	1	0	0	0	11665	912	32	2	4518	2	PCNXL2	1	233388221	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	32803611	233388221	15862400	7	35106										
LYST	0	genome.wustl.edu	37	chr1	235969927	235969927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gtctatcccatcaatatctgGaactgaggcatctttctgtt	7	10	5	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	235969927	235969927	G	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.2509	p.P837S	0.900	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	220	0	0	207	98	32.13	-	-	-	A	235969927	G	A	235969927	3	1	313	1	0	0	0	0	1	0	0	0	9195	1174	41	2	9088	2	LYST	1	235969927	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	2581706	235969927	13280694	8	35107										
C1orf101	0	genome.wustl.edu	37	chr1	244681976	244681976	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tctgaagagaaaagtttattCttcaaatgagaaaatgagaa	8	3	3	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	244681976	244681976	C	G	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.512	p.S171C	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	68	0	0	64	8	11.11	-	-	-	G	244681976	C	G	244681976	3	3	313	1	0	0	0	0	1	0	0	0	1995	913	32	2	542	2	C1orf101	1	244681976	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	8712049	244681976	4568645	9	35108										
KIF26B	0	genome.wustl.edu	37	chr1	245861453	245861453	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	agcactatccctggacacctCttcccctgtgagaaaacccc	6	17	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	1	245861453	245861453	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.5870	p.S1957F	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	83	0	0	166	30	15.31	-	-	-	T	245861453	C	T	245861453	3	4	313	1	0	0	0	0	1	0	0	0	8347	913	32	2	5920	2	KIF26B	1	245861453	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	1179477	245861453	3389168	10	35109										
RTN4	0	genome.wustl.edu	37	chr2	55252534	55252534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	agctccatccggggcattagCaatttcacttttgtgggata	10	9	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	55252534	55252534	C	A	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.2701	p.A901S	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	62	0	0	46	10	17.86	-	-	-	A	55252534	C	A	55252534	3	1	313	1	0	0	0	0	1	0	0	0	13814	710	25	4	943	4	RTN4	2	55252534	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		55252534	187946839	11	35110										
RGPD3	0	genome.wustl.edu	37	chr2	107040417	107040417	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aggtaaaggaacaacaggttCaaagtactgtccatctctct	8	9	3	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	107040417	107040417	C	G	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.4006	p.E1336Q	1.000	smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	177	0	0	95	28	22.76	-	-	-	G	107040417	C	G	107040417	3	3	313	1	0	0	0	0	1	0	0	0	13370	835	29	2	1286	2	RGPD3	2	107040417	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	51787883	107040417	136158956	12	35111										
CNTNAP5	0	genome.wustl.edu	37	chr2	125547707	125547707	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttcaccttatgaagggccctTttgcaaaaaaggtaccttag	8	9	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	125547707	125547707	T	G	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.2978	p.F993C	0.998	superfamily_ConA-like_lec_gl,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	42	0	0	52	26	33.33	-	-	-	G	125547707	T	G	125547707	3	3	313	1	0	0	0	0	1	0	0	0	3680	1841	64	5	3048	5	CNTNAP5	2	125547707	Missense_Mutation	SNP	T	TCGA-AO-A03N-01B-11D-A10M-09	18507290	125547707	117651666	13	35112										
GPR155	0	genome.wustl.edu	37	chr2	175311476	175311476	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gcgactcacacaatgattgtCtataaaagagtaagcacaac	7	9	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	175311476	175311476	C	T	SNP	GPR155	ENST00000295500	human	ensembl	69_37n	-1	known	splice_site	c.1877-1	e11-1	1.000	-	-	-	no_errors	GPR155	HGNC	ENSG00000163328	142	0	0	138	20	12.66	-	-	-	T	175311476	C	T	175311476	5	4	313	1	0	0	0	0	0	0	1	0	6710	927	32	2	756	2	GPR155	2	175311476	Splice_Site	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	49763769	175311476	67887897	14	35113										
EVX2	0	genome.wustl.edu	37	chr2	176948445	176948445	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttggagaatctcttgcccgcCgtagggctgtgcagccctct	12	13	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	176948445	176948445	C	T	SNP	EVX2	ENST00000308618	human	ensembl	69_37n	-1	known	silent	c.60	p.T20	0.830	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279	78	0	0	66	45	40.54	-	-	-	T	176948445	C	T	176948445	2	4	313	1	0	0	0	0	0	0	0	1	5331	639	23	1		1	EVX2	2	176948445	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	1636969	176948445	66250928	15	35114										
MAP2	0	genome.wustl.edu	37	chr2	210560177	210560177	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	cagatgcatttatgggtgttGagtctggccacatgaaagaa	12	6	1	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	210560177	210560177	G	C	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.3283	p.E1095Q	0.948	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	73	0	0	84	33	28.21	-	-	-	C	210560177	G	C	210560177	3	2	313	1	0	0	0	0	1	0	0	0	9306	1291	45	2	3297	2	MAP2	2	210560177	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	33611732	210560177	32639196	16	35115										
IQCA1	0	genome.wustl.edu	37	chr2	237233390	237233390	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gcctcctgttatcgccaaggCacgttttttacccagaggag	10	12	0	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	2	237233390	237233390	C	A	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	missense	c.2410	p.A804S	0.870	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	296	0	0	314	78	19.9	-	-	-	A	237233390	C	A	237233390	3	1	313	1	0	0	0	0	1	0	0	0	7856	710	25	4	62	4	IQCA1	2	237233390	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	26673213	237233390	5965983	17	35116										
ZFYVE20	0	genome.wustl.edu	37	chr3	15115823	15115823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctctggggtaagcgctcctgGccaacggctgggggcccaga	16	13	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	15115823	15115823	G	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	silent	c.1821	p.G607	0.023	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	80	0	0	87	38	30.4	-	-	-	A	15115823	G	A	15115823	2	1	313	1	0	0	0	0	0	0	0	1	17762	1190	42	4		4	ZFYVE20	3	15115823	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		15115823	182906607	18	35117										
LIMD1	0	genome.wustl.edu	37	chr3	45636504	45636504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	accccgagtttgaggaaactCgcagggtgttcgccaccaag	12	12	0	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	45636504	45636504	C	T	SNP	LIMD1	ENST00000273317	human	ensembl	69_37n	1	known	missense	c.133	p.R45C	0.978	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791	18	0	0	18	14	43.75	-	-	-	T	45636504	C	T	45636504	3	4	313	1	0	0	0	0	1	0	0	0	8853	884	31	1	135	1	LIMD1	3	45636504	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	30520681	45636504	152385926	19	35118										
FYCO1	0	genome.wustl.edu	37	chr3	46007805	46007805	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tagtccatgatttcagcactCagctggaacttgagggtgtt	11	8	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	46007805	46007805	C	G	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	silent	c.3021	p.L1007	1.000	superfamily_tRNA-bd_arm	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	92	0	0	83	22	20.95	-	-	-	G	46007805	C	G	46007805	2	3	313	1	0	0	0	0	0	0	0	1	6174	813	29	2		2	FYCO1	3	46007805	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	371301	46007805	152014625	20	35119										
CBLB	0	genome.wustl.edu	37	chr3	105586395	105586395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tttcctcctcgaccaccaggGtttctgccattcattgagtt	7	13	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	105586395	105586395	G	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.27	p.N9K	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	97	0	0	72	19	20.88	-	-	-	T	105586395	G	T	105586395	3	4	313	1	0	0	0	0	1	0	0	0	2726	1252	44	4	2993	4	CBLB	3	105586395	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	59578590	105586395	92436035	21	35120										
CP	0	genome.wustl.edu	37	chr3	148894046	148894046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tggatattcaccttcattttGtagaacggtgtaagtggttt	10	5	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	148894046	148894046	G	T	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.3172	p.Q1058K	0.070	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	195	0	0	139	43	23.63	-	-	-	T	148894046	G	T	148894046	3	4	313	1	0	0	0	0	1	0	0	0	3817	1386	48	4	33	4	CP	3	148894046	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	43307651	148894046	49128384	22	35121										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	189	0	0	92	31	25.2	-	-	-	A	178936082	G	A	178936082	3	1	313	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	30042036	178936082	19086348	23	35122										
TRPC3	0	genome.wustl.edu	37	chr4	122853847	122853847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tgaggatggcctctacgatgCgcacgtagcccttgctgatg	13	11	1	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	4	122853847	122853847	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	missense	c.566	p.R189H	1.000	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	14	0	0	21	6	22.22	-	-	-	T	122853847	C	T	122853847	3	4	313	1	0	0	0	0	1	0	0	0	16675	768	27	1	2243	1	TRPC3	4	122853847	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		122853847	68300429	24	35123										
C7	0	genome.wustl.edu	37	chr5	40959673	40959673	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gtgggagatcctgcgttggaGaaacgacagaaagcacacaa	13	8	0	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	5	40959673	40959673	G	A	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.1612	p.E538K	0.997	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	79	0	0	98	28	22.22	-	-	-	A	40959673	G	A	40959673	3	1	313	1	0	0	0	0	1	0	0	0	2398	943	33	2	1658	2	C7	5	40959673	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		40959673	139955587	25	35124										
ADAMTS6	0	genome.wustl.edu	37	chr5	64511230	64511230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttggtctcttgtaatgaaaaGctgtcccagcaacatcaaat	7	9	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	5	64511230	64511230	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.2357	p.A786V	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	192	0	0	163	43	20.87	-	-	-	A	64511230	G	A	64511230	3	1	313	1	0	0	0	0	1	0	0	0	270	971	34	4	1024	4	ADAMTS6	5	64511230	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	23551557	64511230	116404030	26	35125										
P4HA2	0	genome.wustl.edu	37	chr5	131533908	131533908	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	atcatactcacgtagtttaaGaaagtagccacacgattccc	6	11	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	5	131533908	131533908	G	T	SNP	P4HA2	ENST00000166534	human	ensembl	69_37n	-1	known	missense	c.1362	p.F454L	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682	193	0	0	201	58	22.39	-	-	-	T	131533908	G	T	131533908	3	4	313	1	0	0	0	0	1	0	0	0	11430	933	33	2	261	2	P4HA2	5	131533908	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	67022678	131533908	49381352	27	35126										
HIVEP1	0	genome.wustl.edu	37	chr6	12164532	12164532	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tccacgtcacaacctctgctGaaggcacattctgaagtttt	7	12	3	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	12164532	12164532	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	silent	c.7995	p.L2665	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	42	0	0	47	7	12.96	-	-	-	A	12164532	G	A	12164532	2	1	313	1	0	0	0	0	0	0	0	1	7237	1277	45	2		2	HIVEP1	6	12164532	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		12164532	158950535	28	35127										
PFDN6	0	genome.wustl.edu	37	chr6	33258201	33258201	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gctcgggccacagtagggaaGaggctggactatatcacagc	14	10	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	33258201	33258201	G	A	SNP	PFDN6	ENST00000374606	human	ensembl	69_37n	1	known	silent	c.234	p.K78	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN6	HGNC	ENSG00000204220	86	0	0	133	32	19.39	-	-	-	A	33258201	G	A	33258201	2	1	313	1	0	0	0	0	0	0	0	1	11833	933	33	2		2	PFDN6	6	33258201	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	21093669	33258201	137856866	29	35128										
MAPK14	0	genome.wustl.edu	37	chr6	36040654	36040654	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tttcactaatttctaggtatCtggtgacccatctcatgggg	9	9	4	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	36040654	36040654	C	T	SNP	MAPK14	ENST00000229794	human	ensembl	69_37n	1	known	silent	c.310	p.L104	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_p38	-	no_errors	MAPK14	HGNC	ENSG00000112062	234	0	0	229	49	17.63	-	-	-	T	36040654	C	T	36040654	2	4	313	1	0	0	0	0	0	0	0	1	9347	912	32	2		2	MAPK14	6	36040654	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2782453	36040654	135074413	30	35129										
PGK2	0	genome.wustl.edu	37	chr6	49754484	49754484	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttatctggctcagctttaatCttctttccagagggatcttg	8	9	5	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	49754484	49754484	C	T	SNP	PGK2	ENST00000304801	human	ensembl	69_37n	-1	known	silent	c.417	p.K139	0.997	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950	114	0	0	228	31	11.97	-	-	-	T	49754484	C	T	49754484	2	4	313	1	0	0	0	0	0	0	0	1	11865	912	32	2		2	PGK2	6	49754484	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	13713830	49754484	121360583	31	35130										
IMPG1	0	genome.wustl.edu	37	chr6	76744474	76744474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ggatgcgatccagaaagatcCgatatgcttcccatactgct	9	11	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	76744474	76744474	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.332	p.R111Q	1.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	40	0	0	47	13	21.67	-	-	-	T	76744474	C	T	76744474	3	4	313	1	0	0	0	0	1	0	0	0	7782	652	23	1	2121	1	IMPG1	6	76744474	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	26989990	76744474	94370593	32	35131										
DOPEY1	0	genome.wustl.edu	37	chr6	83830462	83830462	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	agaacactctaatgcaggatCtaaagccttttcgcatttta	6	9	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	83830462	83830462	C	G	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.1051	p.L351V	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	273	0	0	173	48	21.72	-	-	-	G	83830462	C	G	83830462	3	3	313	1	0	0	0	0	1	0	0	0	4742	912	32	2	1081	2	DOPEY1	6	83830462	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	7085988	83830462	87284605	33	35132										
C6orf58	0	genome.wustl.edu	37	chr6	127898402	127898402	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tccttagcagggacttccaaTctctcagagacagagccccc	8	15	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	127898402	127898402	T	A	SNP	C6orf58	ENST00000329722	human	ensembl	69_37n	1	known	missense	c.72	p.N24K	0.000	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530	104	0	0	79	23	22.55	-	-	-	A	127898402	T	A	127898402	3	1	313	1	0	0	0	0	1	0	0	0	2389	1432	50	5	74	5	C6orf58	6	127898402	Missense_Mutation	SNP	T	TCGA-AO-A03N-01B-11D-A10M-09	44067940	127898402	43216665	34	35133										
L3MBTL3	0	genome.wustl.edu	37	chr6	130392142	130392142	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	cagtgatcccatcgggctttCgagttggtatgaagcttgag	13	8	0	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	130392142	130392142	C	T	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	nonsense	c.1114	p.R372*	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	232	0	0	211	31	12.81	-	-	-	T	130392142	C	T	130392142	4	4	313	1	0	0	0	0	0	1	0	0	8647	876	31	1	1156	1	L3MBTL3	6	130392142	Nonsense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2493740	130392142	40722925	35	35134										
MTHFD1L	0	genome.wustl.edu	37	chr6	151281482	151281482	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	acggacagcctcgcagacatGaaggcacggctgggaaggat	15	10	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	151281482	151281482	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	missense	c.1875	p.M625I	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	14	0	0	70	13	15.66	-	-	-	A	151281482	G	A	151281482	3	1	313	1	0	0	0	0	1	0	0	0	10000	1290	45	2	1945	2	MTHFD1L	6	151281482	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	20889340	151281482	19833585	36	35135										
MAP3K4	0	genome.wustl.edu	37	chr6	161507647	161507647	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	agcagcagaattcaggctttCagccccagttagagacctcc	9	13	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	6	161507647	161507647	C	G	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	nonsense	c.2504	p.S835*	0.134	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	159	0	0	122	30	19.74	-	-	-	G	161507647	C	G	161507647	4	3	313	1	0	0	0	0	0	1	0	0	9323	838	29	2	2538	2	MAP3K4	6	161507647	Nonsense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	10226165	161507647	9607420	37	35136										
GGCT	0	genome.wustl.edu	37	chr7	30538452	30538452	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ggggatgggggagcactttcGtaatttgtcatcagataact	13	6	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	30538452	30538452	G	C	SNP	GGCT	ENST00000275428	human	ensembl	69_37n	-1	known	nonsense	c.390	p.Y130*	0.657	NULL	pfam_AIG2-like	-	no_errors	GGCT	HGNC	ENSG00000006625	466	0	0	387	106	21.46	-	-	-	C	30538452	G	C	30538452	4	2	313	1	0	0	0	0	0	1	0	0	6407	1140	40	3	184	3	GGCT	7	30538452	Nonsense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		30538452	128600211	38	35137										
VPS41	0	genome.wustl.edu	37	chr7	38807156	38807156	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ccgtgctgctatgtcatagtCtcctctctccaccaggtgat	8	14	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	38807156	38807156	C	T	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.1228	p.D410N	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	205	0	0	213	52	19.62	-	-	-	T	38807156	C	T	38807156	3	4	313	1	0	0	0	0	1	0	0	0	17307	913	32	2	1396	2	VPS41	7	38807156	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	8268704	38807156	120331507	39	35138										
ABCB1	0	genome.wustl.edu	37	chr7	87179586	87179586	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gccaccgtctgcccactctgCaccttcaggttcagaccctt	7	18	4	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	87179586	87179586	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.1251	p.V417	0.998	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	98	0	0	183	45	19.74	-	-	-	T	87179586	C	T	87179586	2	4	313	1	0	0	0	0	0	0	0	1	40	697	25	4		4	ABCB1	7	87179586	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	48372430	87179586	71959077	40	35139										
ZAN	0	genome.wustl.edu	37	chr7	100352988	100352988	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tttagtgacaaccactgcatCcaggcctcttcctgcaattg	7	13	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	100352988	100352988	C	G	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.3264	p.I1088M	0.965	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	73	0	0	149	31	17.22	-	-	-	G	100352988	C	G	100352988	3	3	313	1	0	0	0	0	1	0	0	0	17610	845	30	2	3318	2	ZAN	7	100352988	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	13173402	100352988	58785675	41	35140										
RELN	0	genome.wustl.edu	37	chr7	103130322	103130322	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttctcagtttcttctcccttCtggatccagcggaactgtgt	8	12	4	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	103130322	103130322	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	silent	c.9630	p.Q3210	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	83	0	0	74	12	13.95	-	-	-	T	103130322	C	T	103130322	2	4	313	1	0	0	0	0	0	0	0	1	13303	912	32	2		2	RELN	7	103130322	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2777334	103130322	56008341	42	35141										
LAMB1	0	genome.wustl.edu	37	chr7	107626640	107626640	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctctccttcagttgagggttCaatgtcagaatatcgagaat	9	8	4	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	7	107626640	107626640	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.592	p.E198K	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	211	0	0	205	39	15.98	-	-	-	T	107626640	C	T	107626640	3	4	313	1	0	0	0	0	1	0	0	0	8664	835	29	2	4884	2	LAMB1	7	107626640	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	4496318	107626640	51512023	43	35142										
DLC1	0	genome.wustl.edu	37	chr8	13072274	13072274	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	catccacttccaactttactGattttaccgctgctgggttc	6	13	0	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	8	13072274	13072274	G	T	SNP	DLC1	ENST00000316609	human	ensembl	69_37n	-1	known	nonsense	c.1358	p.S453*	0.015	NULL	NULL	-	no_errors	DLC1	HGNC	ENSG00000164741	313	0	0	124	48	27.91	-	-	-	T	13072274	G	T	13072274	4	4	313	1	0	0	0	0	0	1	0	0	4586	1305	45	2		2	DLC1	8	13072274	Nonsense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		13072274	133291748	44	35143										
CYP7B1	0	genome.wustl.edu	37	chr8	65527712	65527712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tgccatagcttctgggtgccGcagaagataatacattgccc	10	11	1	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	8	65527712	65527712	G	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	missense	c.928	p.R310W	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	149	0	0	132	35	20.96	-	-	-	A	65527712	G	A	65527712	3	1	313	1	0	0	0	0	1	0	0	0	4228	1086	38	1	604	1	CYP7B1	8	65527712	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	52455438	65527712	80836310	45	35144										
NSMCE2	0	genome.wustl.edu	37	chr8	126194375	126194375	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aacgtccagaaaaaataccaGatttaaaattattggtagag	7	5	0	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	8	126194375	126194375	G	C	SNP	NSMCE2	ENST00000287437	human	ensembl	69_37n	1	known	missense	c.295	p.D99H	1.000	NULL	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831	122	0	0	77	17	18.09	-	-	-	C	126194375	G	C	126194375	3	2	313	1	0	0	0	0	1	0	0	0	10749	942	33	2	305	2	NSMCE2	8	126194375	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	60666663	126194375	20169647	46	35145										
BAI1	0	genome.wustl.edu	37	chr8	143602279	143602279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	catcgggcagacccagacccGcaacaaggtaggcagccttg	12	14	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	8	143602279	143602279	G	T	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.3017	p.R1006L	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	104	0	0	148	41	21.58	-	-	-	T	143602279	G	T	143602279	3	4	313	1	0	0	0	0	1	0	0	0	1302	1087	38	3	3091	3	BAI1	8	143602279	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	17407904	143602279	2761743	47	35146										
GALT	0	genome.wustl.edu	37	chr9	34648780	34648780	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aacgtctggtcctaaccagtGagcactggttagtactggtc	11	10	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	9	34648780	34648780	G	C	SNP	GALT	ENST00000378842	human	ensembl	69_37n	1	known	missense	c.709	p.E237Q	1.000	pfam_GalP_Utransf_C,superfamily_HIT-like,pirsf_GalP_UDPtransf1,tigrfam_GalP_UDPtransf1	pfam_GalP_Utransf_N,pfam_GalP_Utransf_C,superfamily_HIT-like,pirsf_GalP_UDPtransf1,tigrfam_GalP_UDPtransf1	-	no_errors	GALT	HGNC	ENSG00000213930	40	0	0	33	17	34	-	-	-	C	34648780	G	C	34648780	3	2	313	1	0	0	0	0	1	0	0	0	6280	1291	45	2	739	2	GALT	9	34648780	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		34648780	106564651	48	35147										
PRUNE2	0	genome.wustl.edu	37	chr9	79324907	79324907	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aaagaagcaaagtcttctatCaggtggtttgttccttgggg	12	6	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	9	79324907	79324907	C	T	SNP	PRUNE2	ENST00000426088	human	ensembl	69_37n	-1	known	missense	c.247	p.D83N	0.999	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRUNE2	HGNC	ENSG00000106772	86	0	0	73	36	33.03	-	-	-	T	79324907	C	T	79324907	3	4	313	1	0	0	0	0	1	0	0	0	12721	813	29	2	7031	2	PRUNE2	9	79324907	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	44676127	79324907	61888524	49	35148										
LPAR1	0	genome.wustl.edu	37	chr9	113637855	113637855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tggcgctcatttctttgtcgCggtaggagtaaatgatgggg	15	6	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	9	113637855	113637855	C	T	SNP	LPAR1	ENST00000538760	human	ensembl	69_37n	-1	known	missense	c.944	p.R315H	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121	99	0	0	195	50	20.41	-	-	-	T	113637855	C	T	113637855	3	4	313	1	0	0	0	0	1	0	0	0	8970	768	27	1	157	1	LPAR1	9	113637855	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	34312948	113637855	27575576	50	35149										
WDR37	0	genome.wustl.edu	37	chr10	1118202	1118202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	cagctcggagcaggagaggaCgggactgccaagagacatgt	16	9	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	10	1118202	1118202	C	T	SNP	WDR37	ENST00000263150	human	ensembl	69_37n	1	known	missense	c.107	p.T36M	0.602	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	71	0	0	30	48	61.54	-	-	-	T	1118202	C	T	1118202	3	4	313	1	0	0	0	0	1	0	0	0	17388	536	19	1	109	1	WDR37	10	1118202	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		1118202	134416545	51	35150										
GSTO1	0	genome.wustl.edu	37	chr10	106014943	106014943	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	agcgcgcccccggggccggtCccggagggctcgatccgcat	16	17	0	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	10	106014943	106014943	C	T	SNP	GSTO1	ENST00000369713	human	ensembl	69_37n	1	known	silent	c.57	p.V19	1.000	superfamily_Thioredoxin-like_fold	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_omega	-	no_errors	GSTO1	HGNC	ENSG00000148834	15	0	0	9	10	52.63	-	-	-	T	106014943	C	T	106014943	2	4	313	1	0	0	0	0	0	0	0	1	6893	842	30	2		2	GSTO1	10	106014943	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	104896741	106014943	29519804	52	35151										
MUC5B	0	genome.wustl.edu	37	chr11	1268931	1268931	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	atccgtgcggccggaggggcAgtctgtgagcagcccctggg	18	12	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	1268931	1268931	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10830	p.A3610	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	30	0	0	51	16	23.88	-	-	-	C	1268931	A	C	1268931	2	2	313	1	0	0	0	0	0	0	0	1	10051	175	7	5		5	MUC5B	11	1268931	Silent	SNP	A	TCGA-AO-A03N-01B-11D-A10M-09		1268931	133737585	53	35152										
MS4A14	0	genome.wustl.edu	37	chr11	60183854	60183854	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	atggaagagaccaaagaatgGaaatctgaggaggaactcca	12	6	1	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	60183854	60183854	G	C	SNP	MS4A14	ENST00000300187	human	ensembl	69_37n	1	known	missense	c.1413	p.W471C	0.992	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	84	0	0	58	20	25.64	-	-	-	C	60183854	G	C	60183854	3	2	313	1	0	0	0	0	1	0	0	0	9930	1183	41	2	1431	2	MS4A14	11	60183854	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	58914923	60183854	74822662	54	35153										
LRRC32	0	genome.wustl.edu	37	chr11	76372514	76372514	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gggagcaccgaggggacctgGagcaggcccagaacctggca	17	12	0	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	76372514	76372514	G	C	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	silent	c.123	p.L41	0.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	21	0	0	54	13	19.4	-	-	-	C	76372514	G	C	76372514	2	2	313	1	0	0	0	0	0	0	0	1	9053	1161	41	2		2	LRRC32	11	76372514	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	16188660	76372514	58634002	55	35154										
GAB2	0	genome.wustl.edu	37	chr11	77930333	77930333	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tctcatcacagcttggcaccCttggaaggctctgaggactg	11	12	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	77930333	77930333	C	G	SNP	GAB2	ENST00000361507	human	ensembl	69_37n	-1	known	missense	c.2016	p.K672N	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	40	0	0	50	38	43.18	-	-	-	G	77930333	C	G	77930333	3	3	313	1	0	0	0	0	1	0	0	0	6198	680	24	4	18	4	GAB2	11	77930333	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	1557819	77930333	57076183	56	35155										
SRPR	0	genome.wustl.edu	37	chr11	126136666	126136666	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aagagtgctcacttggacttCtccatacccctcccatgctt	6	15	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	126136666	126136666	C	A	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.678	p.E226D	0.962	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	74	0	0	52	51	49.51	-	-	-	A	126136666	C	A	126136666	3	1	313	1	0	0	0	0	1	0	0	0	15253	912	32	2	1278	2	SRPR	11	126136666	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	48206333	126136666	8869850	57	35156										
ETS1	0	genome.wustl.edu	37	chr11	128332356	128332356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	acacaaagcggtacacgtagCgtttccccgctgtcttgtgg	11	12	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	11	128332356	128332356	C	T	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	missense	c.1358	p.R453H	1.000	pfam_Ets,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	146	0	0	209	51	19.62	-	-	-	T	128332356	C	T	128332356	3	4	313	1	0	0	0	0	1	0	0	0	5312	768	27	1	103	1	ETS1	11	128332356	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2195690	128332356	6674160	58	35157										
TAS2R42	0	genome.wustl.edu	37	chr12	11338818	11338818	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gaaaaaaaatgaactatgaaGaggaaaaggaaagacatcac	9	4	1	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	11338818	11338818	G	A	SNP	TAS2R42	ENST00000334266	human	ensembl	69_37n	-1	known	silent	c.726	p.L242	0.038	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R42	HGNC	ENSG00000186136	123	0	0	96	23	19.33	-	-	-	A	11338818	G	A	11338818	2	1	313	1	0	0	0	0	0	0	0	1	15672	929	33	2		2	TAS2R42	12	11338818	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		11338818	122513077	59	35158										
RERG	0	genome.wustl.edu	37	chr12	15262253	15262253	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ggccagcttctctccttcttCtgtgctaacctgcctggagt	9	14	3	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	15262253	15262253	C	T	SNP	RERG	ENST00000256953	human	ensembl	69_37n	-1	known	missense	c.391	p.E131K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RERG	HGNC	ENSG00000134533	179	0	0	252	63	20	-	-	-	T	15262253	C	T	15262253	3	4	313	1	0	0	0	0	1	0	0	0	13315	922	32	2	212	2	RERG	12	15262253	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	3923435	15262253	118589642	60	35159										
FKBP11	0	genome.wustl.edu	37	chr12	49315850	49315850	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	attggcctttctgtataggtGatacccaatgaggcccagga	11	9	1	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	49315850	49315850	G	A	SNP	FKBP11	ENST00000550765	human	ensembl	69_37n	-1	known	missense	c.523	p.H175Y	1.000	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP11	HGNC	ENSG00000134285	232	0	0	325	53	14.02	-	-	-	A	49315850	G	A	49315850	3	1	313	1	0	0	0	0	1	0	0	0	5949	1290	45	2	86	2	FKBP11	12	49315850	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	34053597	49315850	84536045	61	35160										
PPP1R1A	0	genome.wustl.edu	37	chr12	54974805	54974805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gggttccttactgcctctctCgtgagttttagggatgcatt	11	9	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	54974805	54974805	C	T	SNP	PPP1R1A	ENST00000257905	human	ensembl	69_37n	-1	known	missense	c.433	p.E145K	0.996	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	300	1	0.33	359	87	19.51	-	-	-	T	54974805	C	T	54974805	3	4	313	1	0	0	0	0	1	0	0	0	12444	893	31	1	90	1	PPP1R1A	12	54974805	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	5658955	54974805	78877090	62	35161										
ANAPC5	0	genome.wustl.edu	37	chr12	121757513	121757513	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttcttacctataaacaccctCtatgctattgagagctgtga	6	10	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	121757513	121757513	C	G	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	missense	c.1624	p.E542Q	1.000	smart_TPR_repeat	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	150	0	0	120	19	13.67	-	-	-	G	121757513	C	G	121757513	3	3	313	1	0	0	0	0	1	0	0	0	605	922	32	2	663	2	ANAPC5	12	121757513	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	66782708	121757513	12094382	63	35162										
NOC4L	0	genome.wustl.edu	37	chr12	132636742	132636742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctggagctcacggcctacgaGgtgcggaactgggccagggt	17	11	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	12	132636742	132636742	G	T	SNP	NOC4L	ENST00000330579	human	ensembl	69_37n	1	known	missense	c.1431	p.E477D	1.000	NULL	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	NOC4L	HGNC	ENSG00000184967	15	0	0	37	13	26	-	-	-	T	132636742	G	T	132636742	3	4	313	1	0	0	0	0	1	0	0	0	10587	1014	35	4	1485	4	NOC4L	12	132636742	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	10879229	132636742	1215153	64	35163										
USPL1	0	genome.wustl.edu	37	chr13	31233476	31233476	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tacctcatttcgatgaatatCtgtttgagaattattgaatt	6	5	2	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	13	31233476	31233476	C	T	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	silent	c.3262	p.L1088	0.899	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	122	0	0	72	63	46.67	-	-	-	T	31233476	C	T	31233476	2	4	313	1	0	0	0	0	0	0	0	1	17189	912	32	2		2	USPL1	13	31233476	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		31233476	83936402	65	35164										
KL	0	genome.wustl.edu	37	chr13	33638277	33638277	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tgcttctattatttctctctCccttatattttactactcga	2	11	3	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	13	33638277	33638277	C	G	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	missense	c.2993	p.S998C	0.994	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	148	0	0	57	25	30.49	-	-	-	G	33638277	C	G	33638277	3	3	313	1	0	0	0	0	1	0	0	0	8384	855	30	2	3011	2	KL	13	33638277	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2404801	33638277	81531601	66	35165										
TGDS	0	genome.wustl.edu	37	chr13	95232200	95232200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tactgcttcttgtgatgacaActggaaacttaaaagaatat	7	6	1	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	13	95232200	95232200	A	G	SNP	TGDS	ENST00000261296	human	ensembl	69_37n	-1	known	missense	c.563	p.V188A	1.000	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	-	no_errors	TGDS	HGNC	ENSG00000088451	319	0	0	123	52	29.71	-	-	-	G	95232200	A	G	95232200	3	3	313	1	0	0	0	0	1	0	0	0	15909	43	2	5	513	5	TGDS	13	95232200	Missense_Mutation	SNP	A	TCGA-AO-A03N-01B-11D-A10M-09	61593923	95232200	19937678	67	35166										
SLC8A3	0	genome.wustl.edu	37	chr14	70634913	70634913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ccacaaaatagacaatgaccCtggcaatcttgtccccaagg	7	13	1	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	14	70634913	70634913	C	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	missense	c.227	p.R76M	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	86	0	0	24	41	63.08	-	-	-	A	70634913	C	A	70634913	3	1	313	1	0	0	0	0	1	0	0	0	14797	681	24	4	2695	4	SLC8A3	14	70634913	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		70634913	36714627	68	35167										
RTL1	0	genome.wustl.edu	37	chr14	101348584	101348584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctcgaaggcctcttgctcctCgactccccagtagaactggt	9	15	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	14	101348584	101348584	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2542	p.E848K	0.995	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	34	0	0	41	11	21.15	-	-	-	T	101348584	C	T	101348584	3	4	313	1	0	0	0	0	1	0	0	0	13810	893	31	1	1538	1	RTL1	14	101348584	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	30713671	101348584	6000956	69	35168										
BUB1B	0	genome.wustl.edu	37	chr15	40498522	40498522	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gtatccactccttttcatgaGataatgtccttgaaggatct	7	9	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	15	40498522	40498522	G	A	SNP	BUB1B	ENST00000412359	human	ensembl	69_37n	1	known	silent	c.1914	p.E638	0.912	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	81	0	0	77	24	23.76	-	-	-	A	40498522	G	A	40498522	2	1	313	1	0	0	0	0	0	0	0	1	1580	933	33	2		2	BUB1B	15	40498522	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		40498522	62032870	70	35169										
MEGF11	0	genome.wustl.edu	37	chr15	66206079	66206079	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ggagcatggcccttacctgaGagggagtagtcggtgctggt	17	8	0	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	15	66206079	66206079	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	silent	c.2706	p.L902	0.987	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	25	0	0	68	18	20.93	-	-	-	A	66206079	G	A	66206079	2	1	313	1	0	0	0	0	0	0	0	1	9532	929	33	2		2	MEGF11	15	66206079	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	25707557	66206079	36325313	71	35170										
SCAPER	0	genome.wustl.edu	37	chr15	76726583	76726583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	actttgagaagtccagttgtCaagccttcaaaaacttgttt	7	8	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	15	76726583	76726583	C	G	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.3147	p.L1049F	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	161	0	0	98	45	31.47	-	-	-	G	76726583	C	G	76726583	3	3	313	1	0	0	0	0	1	0	0	0	13965	825	29	2	1083	2	SCAPER	15	76726583	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	10520504	76726583	25804809	72	35171										
IFT140	0	genome.wustl.edu	37	chr16	1608111	1608111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gtggcacccaggctccacctCgtcttctctgtctgcttctt	8	16	4	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	1608111	1608111	C	T	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.2224	p.E742K	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	91	0	0	231	39	14.44	-	-	-	T	1608111	C	T	1608111	3	4	313	1	0	0	0	0	1	0	0	0	7610	893	31	1	2216	1	IFT140	16	1608111	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		1608111	88746642	73	35172										
ITPRIPL2	0	genome.wustl.edu	37	chr16	19126677	19126677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttgccctgccgcactgactaCggctgctgccgcctttctat	9	16	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	19126677	19126677	C	T	SNP	ITPRIPL2	ENST00000381440	human	ensembl	69_37n	1	known	silent	c.894	p.Y298	1.000	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730	9	0	0	45	8	15.09	-	-	-	T	19126677	C	T	19126677	2	4	313	1	0	0	0	0	0	0	0	1	7979	547	19	1		1	ITPRIPL2	16	19126677	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	17518566	19126677	71228076	74	35173										
RNF40	0	genome.wustl.edu	37	chr16	30783268	30783268	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gccgggctgctcgtgagaaaGagagcttcaacctcaagagg	14	10	2	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	30783268	30783268	G	C	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.2701	p.E901Q	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	12	0	0	42	8	16	-	-	-	C	30783268	G	C	30783268	3	2	313	1	0	0	0	0	1	0	0	0	13579	943	33	2	2767	2	RNF40	16	30783268	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	11656591	30783268	59571485	75	35174										
BCKDK	0	genome.wustl.edu	37	chr16	31123564	31123564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gctccgccacatcgatggccGggaggaaagcttccggatct	13	13	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	31123564	31123564	G	T	SNP	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	missense	c.1217	p.R406L	1.000	NULL	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	10	0	0	35	25	41.67	-	-	-	T	31123564	G	T	31123564	3	4	313	1	0	0	0	0	1	0	0	0	1365	1116	39	3	1263	3	BCKDK	16	31123564	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	340296	31123564	59231189	76	35175										
SLC5A2	0	genome.wustl.edu	37	chr16	31496154	31496154	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	acccaggttggggcctctctCttcgccagcaacatcggcag	11	15	2	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	31496154	31496154	C	G	SNP	SLC5A2	ENST00000330498	human	ensembl	69_37n	1	known	silent	c.213	p.L71	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675	35	0	0	120	17	12.41	-	-	-	G	31496154	C	G	31496154	2	3	313	1	0	0	0	0	0	0	0	1	14754	900	32	2		2	SLC5A2	16	31496154	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	372590	31496154	58858599	77	35176										
MYLK3	0	genome.wustl.edu	37	chr16	46771693	46771693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ccctggaggccctgggcactGagggccaggccctggagtca	16	14	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	16	46771693	46771693	G	C	SNP	MYLK3	ENST00000394809	human	ensembl	69_37n	-1	known	missense	c.931	p.Q311E	0.006	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795	13	0	0	60	10	14.29	-	-	-	C	46771693	G	C	46771693	3	2	313	1	0	0	0	0	1	0	0	0	10130	1299	45	2	1572	2	MYLK3	16	46771693	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	15275539	46771693	43583060	78	35177										
PLD2	0	genome.wustl.edu	37	chr17	4711091	4711091	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	acggcgacccctgagagcctCttccccactggggacgaact	11	16	1	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	4711091	4711091	C	T	SNP	PLD2	ENST00000263088	human	ensembl	69_37n	1	known	silent	c.24	p.L8	0.820	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219	17	0	0	33	13	28.26	-	-	-	T	4711091	C	T	4711091	2	4	313	1	0	0	0	0	0	0	0	1	12120	900	32	2		2	PLD2	17	4711091	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		4711091	76484119	79	35178										
TP53	0	genome.wustl.edu	37	chr17	7578449	7578449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ctgtgactgcttgtagatggCcatggcgcggacgcgggtgc	17	10	0	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	7578449	7578449	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.481	p.A161T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	39	0	0	17	39	69.64	-	-	-	T	7578449	C	T	7578449	3	4	313	1	0	0	0	0	1	0	0	0	16477	739	26	4	817	4	TP53	17	7578449	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	2867358	7578449	73616761	80	35179										
C17orf78	0	genome.wustl.edu	37	chr17	35736110	35736110	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ccaaaaggacaacattcattCaaaaccggactatagctacc	5	12	2	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	35736110	35736110	C	T	SNP	C17orf78	ENST00000300618	human	ensembl	69_37n	1	known	nonsense	c.181	p.Q61*	0.059	NULL	NULL	-	no_errors	C17orf78	HGNC	ENSG00000167230	161	0	0	96	40	29.41	-	-	-	T	35736110	C	T	35736110	4	4	313	1	0	0	0	0	0	1	0	0	1899	827	29	2	191	2	C17orf78	17	35736110	Nonsense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	28157661	35736110	45459100	81	35180										
SYNRG	0	genome.wustl.edu	37	chr17	35900635	35900635	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tcaccaaggctcaaactcctCttgtgtgatcctgggagaag	10	11	3	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	35900635	35900635	C	G	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	missense	c.3213	p.K1071N	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	64	0	0	55	34	38.2	-	-	-	G	35900635	C	G	35900635	3	3	313	1	0	0	0	0	1	0	0	0	15552	912	32	2	832	2	SYNRG	17	35900635	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	164525	35900635	45294575	82	35181										
KRT25	0	genome.wustl.edu	37	chr17	38907420	38907420	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttctggaggagagtcaccttCtcgttgaaccaggcctccgc	11	13	3	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	38907420	38907420	C	T	SNP	KRT25	ENST00000312150	human	ensembl	69_37n	-1	known	silent	c.828	p.E276	0.020	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897	56	0	0	75	29	27.88	-	-	-	T	38907420	C	T	38907420	2	4	313	1	0	0	0	0	0	0	0	1	8515	912	32	2		2	KRT25	17	38907420	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	3006785	38907420	42287790	83	35182										
LLGL2	0	genome.wustl.edu	37	chr17	73564696	73564696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gccatcacctgctctcaccaCgtctccaacatcccgctgaa	5	19	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	17	73564696	73564696	C	T	SNP	LLGL2	ENST00000392550	human	ensembl	69_37n	1	known	silent	c.1176	p.H392	0.975	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	25	0	0	35	16	31.37	-	-	-	T	73564696	C	T	73564696	2	4	313	1	0	0	0	0	0	0	0	1	8890	535	19	1		1	LLGL2	17	73564696	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	34657276	73564696	7630514	84	35183										
ZNF69	0	genome.wustl.edu	37	chr19	12016630	12016630	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aacacacgtaagaatacactCtggagaaagaccttataaat	6	8	1	3			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	19	12016630	12016630	C	G	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	1	known	missense	c.1418	p.S473C	0.990	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	127	0	0	83	23	21.7	-	-	-	G	12016630	C	G	12016630	3	3	313	1	0	0	0	0	1	0	0	0	18191	928	32	2		2	ZNF69	19	12016630	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		12016630	47112353	85	35184										
RPS16	0	genome.wustl.edu	37	chr19	39924348	39924348	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ccaccctttacacggacacgGatgtctacaccagcaaatcg	7	15	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	19	39924348	39924348	G	T	SNP	RPS16	ENST00000339471	human	ensembl	69_37n	-1	known	silent	c.204	p.I68	1.000	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	RPS16	HGNC	ENSG00000105193	57	0	0	82	18	18	-	-	-	T	39924348	G	T	39924348	2	4	313	1	0	0	0	0	0	0	0	1	13713	1164	41	2		2	RPS16	19	39924348	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	27907718	39924348	19204635	86	35185										
KIF3B	0	genome.wustl.edu	37	chr20	30898419	30898419	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	cgctttgggtaatgtcatctCtgctctagtggacggcaaaa	11	9	3	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	20	30898419	30898419	C	T	SNP	KIF3B	ENST00000375712	human	ensembl	69_37n	1	known	missense	c.839	p.S280F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	82	0	0	122	21	14.69	-	-	-	T	30898419	C	T	30898419	3	4	313	1	0	0	0	0	1	0	0	0	8353	913	32	2	841	2	KIF3B	20	30898419	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		30898419	32127101	87	35186										
PRIC285	0	genome.wustl.edu	37	chr20	62191561	62191561	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gaggacacggccaccccggcGatgccctctcgccgaagggc	14	17	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	20	62191561	62191561	G	A	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	silent	c.7620	p.I2540	0.002	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	16	0	0	25	5	16.67	-	-	-	A	62191561	G	A	62191561	2	1	313	1	0	0	0	0	0	0	0	1	12566	1048	37	1		1	PRIC285	20	62191561	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	31293142	62191561	833959	88	35187										
SLC5A3	0	genome.wustl.edu	37	chr21	35467894	35467894	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	ttgcagccttgtctctgattCtctatattttcaccaagctc	5	12	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	21	35467894	35467894	C	G	SNP	SLC5A3	ENST00000381151	human	ensembl	69_37n	1	known	missense	c.397	p.L133V	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	128	0	0	163	37	18.5	-	-	-	G	35467894	C	G	35467894	3	3	313	1	0	0	0	0	1	0	0	0	14755	913	32	2	399	2	SLC5A3	21	35467894	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		35467894	12662001	89	35188										
SLC37A1	0	genome.wustl.edu	37	chr21	43967216	43967216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	catgtttgctctttcagatcCgaacgacgtcaggtgctcct	9	12	3	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	21	43967216	43967216	C	T	SNP	SLC37A1	ENST00000352133	human	ensembl	69_37n	1	known	missense	c.734	p.P245L	0.975	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190	159	0	0	239	69	22.4	-	-	-	T	43967216	C	T	43967216	3	4	313	1	0	0	0	0	1	0	0	0	14686	652	23	1	764	1	SLC37A1	21	43967216	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	8499322	43967216	4162679	90	35189										
CACNA1I	0	genome.wustl.edu	37	chr22	40075816	40075816	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gacaacctgtcgggctccatCttccaccactactcctcgcc	6	19	1	0			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	22	40075816	40075816	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	silent	c.5502	p.I1834	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	25	0	0	42	9	17.65	-	-	-	A	40075816	C	A	40075816	2	1	313	1	0	0	0	0	0	0	0	1	2571	903	32	2		2	CACNA1I	22	40075816	Silent	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09		40075816	11228750	91	35190										
WNK3	0	genome.wustl.edu	37	chrX	54275569	54275569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	gagtgggaatgactgtcttaGgagaacttgcttcagtgttc	13	6	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	X	54275569	54275569	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.3212	p.P1071L	0.030	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	210	0	0	235	29	10.98	-	-	-	A	54275569	G	A	54275569	3	1	313	1	0	0	0	0	1	0	0	0	17476	1000	35	4	2222	4	WNK3	23	54275569	Missense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09		54275569	100994991	92	35191										
AR	0	genome.wustl.edu	37	chrX	66931346	66931346	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aacccagaagctgacagtgtCacacattgaaggctatgaat	9	9	1	4			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	X	66931346	66931346	C	G	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	nonsense	c.1988	p.S663*	1.000	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	67	0	0	131	25	16.03	-	-	-	G	66931346	C	G	66931346	4	3	313	1	0	0	0	0	0	1	0	0	838	838	29	2	2026	2	AR	23	66931346	Nonsense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	12655777	66931346	88339214	93	35192										
OPHN1	0	genome.wustl.edu	37	chrX	67414316	67414316	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	aagtgactcactttcttgctGttttgttatagggctgtggt	11	6	2	1			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	X	67414316	67414316	G	A	SNP	OPHN1	ENST00000355520	human	ensembl	69_37n	-1	known	nonsense	c.1129	p.Q377*	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	368	0	0	203	359	63.88	-	-	-	A	67414316	G	A	67414316	4	1	313	1	0	0	0	0	0	1	0	0	10948	1386	48	4	1327	4	OPHN1	23	67414316	Nonsense_Mutation	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	482970	67414316	87856244	94	35193										
RAB33A	0	genome.wustl.edu	37	chrX	129306147	129306147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tacgtgcagattcgcatcttCaaaataatcgtgattgggga	10	7	2	2			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	X	129306147	129306147	C	G	SNP	RAB33A	ENST00000257017	human	ensembl	69_37n	1	known	missense	c.111	p.F37L	1.000	pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594	30	0	0	54	11	16.92	-	-	-	G	129306147	C	G	129306147	3	3	313	1	0	0	0	0	1	0	0	0	13005	825	29	2	113	2	RAB33A	23	129306147	Missense_Mutation	SNP	C	TCGA-AO-A03N-01B-11D-A10M-09	61891831	129306147	25964413	95	35194										
GPR119	0	genome.wustl.edu	37	chrX	129518882	129518882	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.479166666666667	46	7.14523626967879e-17	3.95113797093995	5.01741208603619	3.30693069306931	0.842408486570683	1	34	tcgcagtagaagaagacaaaGaggagcatggctgggaagaa	15	5	0	5			TCGA-AO-A03N-01B-11D-A10M-09	TCGA-AO-A03N-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ef5987f1-46ac-430a-b94a-49afa0e286d4	0af57ba4-305f-4d9d-b6fd-b242be5cd19a	X	129518882	129518882	G	C	SNP	GPR119	ENST00000276218	human	ensembl	69_37n	-1	known	silent	c.540	p.L180	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR119	HGNC	ENSG00000147262	39	0	0	55	10	15.38	-	-	-	C	129518882	G	C	129518882	2	2	313	1	0	0	0	0	0	0	0	1	6684	929	33	2		2	GPR119	23	129518882	Silent	SNP	G	TCGA-AO-A03N-01B-11D-A10M-09	212735	129518882	25751678	96	35195										
ASH1L	0	genome.wustl.edu	37	chr1	155451295	155451295	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gctggtggcactatctttcaGggattcagaaagttcctgac	11	9	3	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	155451295	155451295	G	C	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1366	p.L456V	0.908	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	219	0	0	200	63	23.95	-	-	-	C	155451295	G	C	155451295	3	2	314	1	0	0	0	0	1	0	0	0	1045	991	35	4	7632	4	ASH1L	1	155451295	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		155451295	93799326	1	35196										
PBX1	0	genome.wustl.edu	37	chr1	164776849	164776849	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	atttctattcccatctcagcAacccttaccccagtgaggaa	5	14	2	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	164776849	164776849	A	T	SNP	PBX1	ENST00000420696	human	ensembl	69_37n	1	known	missense	c.772	p.N258Y	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX1	HGNC	ENSG00000185630	269	0	0	395	59	13	-	-	-	T	164776849	A	T	164776849	3	4	314	1	0	0	0	0	1	0	0	0	11565	130	5	5	790	5	PBX1	1	164776849	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	9325554	164776849	84473772	2	35197										
CAD	0	genome.wustl.edu	37	chr2	27456981	27456982	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	aggtgatgcgacgctggtgaINScccccccacaagatatcact							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	27456981	27456982	-	C	INS	CAD	ENST00000264705	human	ensembl	69_37n	1	known	frame_shift_ins	c.3505_3506	p.Q1172fs	1.000:1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	36	0	0	36	4	10	-	-	-	C	27456982	-	C	27456981	7	5	314	1	0	1	1	0	0	0	0	0	2590	275	10	0	3591	0	CAD	2	27456981	Frame_Shift_Ins	INS	-	TCGA-AO-A03O-01A-11W-A019-09		27456981	215742392	3	35198										
MFSD9	0	genome.wustl.edu	37	chr2	103334999	103334999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ggggggccgcaagggctgacCtcctgggcaacccccgagag	17	14	0	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	103334999	103334999	C	G	SNP	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	missense	c.1305	p.E435D	0.998	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	44	0	0	31	6	16.22	-	-	-	G	103334999	C	G	103334999	3	3	314	1	0	0	0	0	1	0	0	0	9610	680	24	4	123	4	MFSD9	2	103334999	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	75878018	103334999	139864374	4	35199										
FIGN	0	genome.wustl.edu	37	chr2	164466086	164466086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tgactgcaaccaaacattttGttccattcaacatacatatc	3	11	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	164466086	164466086	G	C	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.2256	p.N752K	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	124	0	0	98	32	24.62	-	-	-	C	164466086	G	C	164466086	3	2	314	1	0	0	0	0	1	0	0	0	5937	1368	48	4	27	4	FIGN	2	164466086	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	61131087	164466086	78733287	5	35200										
CNTN6	0	genome.wustl.edu	37	chr3	1369212	1369212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tcagattctggtgtgtaccaAtgtgctgcagaaaacaaata	9	7	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	1369212	1369212	A	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.1155	p.Q385H	0.983	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	77	0	0	56	14	20	-	-	-	T	1369212	A	T	1369212	3	4	314	1	0	0	0	0	1	0	0	0	3675	98	4	5	1189	5	CNTN6	3	1369212	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09		1369212	196653218	6	35201										
TMEM43	0	genome.wustl.edu	37	chr3	14170983	14170983	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cagccaggcttcctggaacgGctgagcgagacctcgggtgg	16	12	0	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	14170983	14170983	G	A	SNP	TMEM43	ENST00000306077	human	ensembl	69_37n	1	known	silent	c.84	p.R28	0.997	NULL	pfam_TMEM43_fam	-	no_errors	TMEM43	HGNC	ENSG00000170876	63	0	0	84	10	10.64	-	-	-	A	14170983	G	A	14170983	2	1	314	1	0	0	0	0	0	0	0	1	16262	1190	42	4		4	TMEM43	3	14170983	Silent	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	12801771	14170983	183851447	7	35202										
VGLL3	0	genome.wustl.edu	37	chr3	87017995	87017995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ggcatgagggtggtggtgccGcatgtacacgtcatgcatat	15	8	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	87017995	87017995	G	A	SNP	VGLL3	ENST00000398399	human	ensembl	69_37n	-1	known	missense	c.682	p.R228W	1.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538	81	0	0	103	30	22.56	-	-	-	A	87017995	G	A	87017995	3	1	314	1	0	0	0	0	1	0	0	0	17257	1086	38	1	306	1	VGLL3	3	87017995	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	72847012	87017995	111004435	8	35203										
TRA2B	0	genome.wustl.edu	37	chr3	185641773	185641773	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cagttaggatcaggatttgcCtagggaaaaaaaaaagtttt	10	4	1	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	185641773	185641773	C	G	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	splice_site	c.334-1	e4-1	1.000	-	-	-	no_errors	TRA2B	HGNC	ENSG00000136527	98	0	0	106	16	13.11	-	-	-	G	185641773	C	G	185641773	5	3	314	1	0	0	0	0	0	0	1	0	16530	695	24	4	557	4	TRA2B	3	185641773	Splice_Site	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	98623778	185641773	12380657	9	35204										
GABRG1	0	genome.wustl.edu	37	chr4	46060587	46060587	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cagtatttaggatcagccacTtctacggagggctttttcca	9	10	2	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	4	46060587	46060587	T	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	silent	c.678	p.E226	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	134	0	0	139	23	14.2	-	-	-	C	46060587	T	C	46060587	2	2	314	1	0	0	0	0	0	0	0	1	6220	1606	56	5		5	GABRG1	4	46060587	Silent	SNP	T	TCGA-AO-A03O-01A-11W-A019-09		46060587	145093689	10	35205										
ADAM29	0	genome.wustl.edu	37	chr4	175897349	175897349	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	actcaaagttgctggaggatCtatatgttattgttaatata	8	4	2	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	4	175897349	175897349	C	A	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.673	p.L225I	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	219	0	0	131	32	19.63	-	-	-	A	175897349	C	A	175897349	3	1	314	1	0	0	0	0	1	0	0	0	247	912	32	2	675	2	ADAM29	4	175897349	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	129836762	175897349	15256927	11	35206										
SEMA5A	0	genome.wustl.edu	37	chr5	9063053	9063053	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cagagatgggccaaggcaagGcattcccccatacttgggtt	12	11	0	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	9063053	9063053	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.2464	p.P822T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	48	0	0	44	12	21.43	-	-	-	T	9063053	G	T	9063053	3	4	314	1	0	0	0	0	1	0	0	0	14125	1203	42	4	784	4	SEMA5A	5	9063053	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		9063053	171852207	12	35207										
OSMR	0	genome.wustl.edu	37	chr5	38885552	38885552	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	acactgccttggggtggtctAaacaaccttcccaaagctac	8	13	1	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	38885552	38885552	A	C	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	missense	c.805	p.K269Q	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	242	0	0	268	48	15.19	-	-	-	C	38885552	A	C	38885552	3	2	314	1	0	0	0	0	1	0	0	0	11365	363	13	5	823	5	OSMR	5	38885552	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	29822499	38885552	142029708	13	35208										
ZNF366	0	genome.wustl.edu	37	chr5	71752236	71752236	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agtcccactgcccaccttgcAtttgaaaggcttcacgtcag	8	14	2	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	71752236	71752236	A	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.1519	p.C507S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	191	0	0	120	46	27.38	-	-	-	T	71752236	A	T	71752236	3	4	314	1	0	0	0	0	1	0	0	0	17966	217	8	5	727	5	ZNF366	5	71752236	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	32866684	71752236	109163024	14	35209										
UBE2D2	0	genome.wustl.edu	37	chr5	138994342	138994342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ttcatttcccaacagattacCccttcaaaccacctaaggta	3	14	2	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	138994342	138994342	C	T	SNP	UBE2D2	ENST00000398733	human	ensembl	69_37n	1	known	missense	c.181	p.P61S	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D2	HGNC	ENSG00000131508	198	1	0.5	156	31	16.58	-	-	-	T	138994342	C	T	138994342	3	4	314	1	0	0	0	0	1	0	0	0	16946	623	22	4	195	4	UBE2D2	5	138994342	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	67242106	138994342	41920918	15	35210										
PCDHGA3	0	genome.wustl.edu	37	chr5	140724179	140724179	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gagggggccaagtatccagaGctggtgctggagcgggccct	18	10	0	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	140724179	140724179	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.579	p.E193	0.987	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	165	0	0	140	46	24.73	-	-	-	A	140724179	G	A	140724179	2	1	314	1	0	0	0	0	0	0	0	1	11628	962	34	4		4	PCDHGA3	5	140724179	Silent	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	1729837	140724179	40191081	16	35211										
HTR1B	0	genome.wustl.edu	37	chr6	78172233	78172233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ttcttcttttccagcagggcGtcggagactcgcactttgac	10	12	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	6	78172233	78172233	G	A	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	silent	c.888	p.D296	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1B_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	73	0	0	43	10	18.87	-	-	-	A	78172233	G	A	78172233	2	1	314	1	0	0	0	0	0	0	0	1	7491	1136	40	1		1	HTR1B	6	78172233	Silent	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		78172233	92942834	17	35212										
ASCC3	0	genome.wustl.edu	37	chr6	101073157	101073157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agcagtaagacgagtttgacGtcttgatgagacaaatatca	10	6	2	4			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	6	101073157	101073157	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.4696	p.R1566C	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	86	0	0	86	35	28.93	-	-	-	A	101073157	G	A	101073157	3	1	314	1	0	0	0	0	1	0	0	0	1037	1145	40	1	1964	1	ASCC3	6	101073157	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	22900924	101073157	70041910	18	35213										
KIAA0895	0	genome.wustl.edu	37	chr7	36396564	36396564	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cttagctaatacgcttggcaGagcaggattggcatactcaa	10	9	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	7	36396564	36396564	G	C	SNP	KIAA0895	ENST00000297063	human	ensembl	69_37n	-1	known	missense	c.814	p.L272V	0.834	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	110	0	0	39	31	44.29	-	-	-	C	36396564	G	C	36396564	3	2	314	1	0	0	0	0	1	0	0	0	8249	933	33	2	768	2	KIAA0895	7	36396564	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		36396564	122742099	19	35214										
PON2	0	genome.wustl.edu	37	chr7	95041063	95041063	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gtattcttgaattctgggtgGtttacaacaaagagataaac	9	5	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	7	95041063	95041063	G	T	SNP	PON2	ENST00000536183	human	ensembl	69_37n	-1	known	missense	c.459	p.N153K	1.000	prints_Arylesterase	pfam_Arylesterase,pfam_SGL,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON2	HGNC	ENSG00000105854	143	0	0	64	29	31.18	-	-	-	T	95041063	G	T	95041063	3	4	314	1	0	0	0	0	1	0	0	0	12323	1252	44	4	688	4	PON2	7	95041063	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	58644499	95041063	64097600	20	35215										
VCPIP1	0	genome.wustl.edu	37	chr8	67579088	67579089	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cggtctctccgcttcaaaagINScccccccgaagcagccgccg							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	8	67579088	67579089	-	C	INS	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	frame_shift_ins	c.106_105	p.L35fs	1.000:0.991	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	14	0	0	29	4	12.12	-	-	-	C	67579089	-	C	67579088	7	5	314	1	0	1	1	0	0	0	0	0	17238	971	34	0	3574	0	VCPIP1	8	67579088	Frame_Shift_Ins	INS	-	TCGA-AO-A03O-01A-11W-A019-09		67579088	78784934	21	35216										
VPS13B	0	genome.wustl.edu	37	chr8	100160153	100160153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tcctactcgacatacaagtgTtactctcctcaaatgtacct	4	13	2	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	8	100160153	100160153	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.1928	p.V643A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	409	0	0	848	202	19.2	-	-	-	C	100160153	T	C	100160153	3	2	314	1	0	0	0	0	1	0	0	0	17287	1725	60	5	2020	5	VPS13B	8	100160153	Missense_Mutation	SNP	T	TCGA-AO-A03O-01A-11W-A019-09	32581065	100160153	46203869	22	35217										
IARS	0	genome.wustl.edu	37	chr9	94985652	94985652	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tggctttgcattcaggagctGtaggttgatatactgacaaa	11	6	1	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	9	94985652	94985652	G	A	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	nonsense	c.3529	p.Q1177*	1.000	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	113	0	0	32	19	37.25	-	-	-	A	94985652	G	A	94985652	4	1	314	1	0	0	0	0	0	1	0	0	7527	1386	48	4	271	4	IARS	9	94985652	Nonsense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		94985652	46227779	23	35218										
ERCC6	0	genome.wustl.edu	37	chr10	50684343	50684343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tatgctgctcatctgtaagaCggcaaaataagacctacgga	9	9	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	10	50684343	50684343	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2300	p.R767H	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	180	0	0	237	27	10.23	-	-	-	T	50684343	C	T	50684343	3	4	314	1	0	0	0	0	1	0	0	0	5254	536	19	1	2221	1	ERCC6	10	50684343	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		50684343	84850404	24	35219										
GPR26	0	genome.wustl.edu	37	chr10	125447554	125447554	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cctttgtgtactccttactgCgacaccagtaccgcaaaagc	7	14	0	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	10	125447554	125447554	C	T	SNP	GPR26	ENST00000284674	human	ensembl	69_37n	1	known	nonsense	c.892	p.R298*	1.000	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478	43	0	0	61	10	14.08	-	-	-	T	125447554	C	T	125447554	4	4	314	1	0	0	0	0	0	1	0	0	6734	760	27	1	902	1	GPR26	10	125447554	Nonsense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	74763211	125447554	10087193	25	35220										
OR5AK2	0	genome.wustl.edu	37	chr11	56757155	56757155	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cattttctatgggacactctCttacatgtatttgcagtctc	6	10	3	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	56757155	56757155	C	T	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.767	p.S256F	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	390	2	0.51	192	65	25.29	-	-	-	T	56757155	C	T	56757155	3	4	314	1	0	0	0	0	1	0	0	0	11215	913	32	2	769	2	OR5AK2	11	56757155	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		56757155	78249361	26	35221										
NDUFV1	0	genome.wustl.edu	37	chr11	67378019	67378020	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agggcaagccccgcctgaagINSccccccttccccgcagacgt							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	67378019	67378020	-	C	INS	NDUFV1	ENST00000322776	human	ensembl	69_37n	1	known	frame_shift_ins	c.678_679	p.F228fs	1.000:1.000	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	33	0	0	10	2	16.67	-	-	-	C	67378020	-	C	67378019	7	5	314	1	0	1	1	0	0	0	0	0	10371	962	34	0	696	0	NDUFV1	11	67378019	Frame_Shift_Ins	INS	-	TCGA-AO-A03O-01A-11W-A019-09	10620864	67378019	67628497	27	35222										
SORL1	0	genome.wustl.edu	37	chr11	121416050	121416051	+	Frame_Shift_Ins	INS	-	-	C													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gactgttttcaaacggcggaINSccccccatgccacatgcttc							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	121416050	121416051	-	C	INS	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	frame_shift_ins	c.1963_1964	p.H657fs	1.000:0.997	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	41	0	0	17	2	10.53	-	-	-	C	121416051	-	C	121416050	7	5	314	1	0	1	1	0	0	0	0	0	15023	275	10	0	2017	0	SORL1	11	121416050	Frame_Shift_Ins	INS	-	TCGA-AO-A03O-01A-11W-A019-09	54038031	121416050	13590466	28	35223										
SLCO1B3	0	genome.wustl.edu	37	chr12	21033820	21033820	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tggcatctcatgtagatgtaCcactttcttattgcaactca	6	10	3	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	21033820	21033820	C	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.1363	p.P455A	0.751	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	226	0	0	114	46	28.75	-	-	-	G	21033820	C	G	21033820	3	3	314	1	0	0	0	0	1	0	0	0	14813	507	18	4	1401	4	SLCO1B3	12	21033820	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		21033820	112818075	29	35224										
ADAMTS20	0	genome.wustl.edu	37	chr12	43824186	43824186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tggggcgactagcttcatggCattctgtgtcctctaacact	10	11	3	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	43824186	43824186	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3350	p.C1117Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	67	0	0	49	14	22.22	-	-	-	T	43824186	C	T	43824186	3	4	314	1	0	0	0	0	1	0	0	0	266	710	25	4	2449	4	ADAMTS20	12	43824186	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	22790366	43824186	90027709	30	35225										
TFCP2	0	genome.wustl.edu	37	chr12	51501078	51501078	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ctccttttcatgaggtgttcGtttctccattttttccctat	5	11	2	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	51501078	51501078	G	A	SNP	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	nonsense	c.769	p.R257*	1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	337	0	0	241	63	20.72	-	-	-	A	51501078	G	A	51501078	4	1	314	1	0	0	0	0	0	1	0	0	15890	1153	40	1	775	1	TFCP2	12	51501078	Nonsense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	7676892	51501078	82350817	31	35226										
KRT1	0	genome.wustl.edu	37	chr12	53071201	53071201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gctgtccaggtcgagactgcGgttgttgtccatagagagga	15	8	0	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	53071201	53071201	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.1027	p.R343C	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	184	0	0	70	34	32.69	-	-	-	A	53071201	G	A	53071201	3	1	314	1	0	0	0	0	1	0	0	0	8500	1116	39	1	927	1	KRT1	12	53071201	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	1570123	53071201	80780694	32	35227										
USP15	0	genome.wustl.edu	37	chr12	62749215	62749215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agccaggcctctgtggcctaAgtaacttgggaaatacgtgt	12	9	1	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	62749215	62749215	A	G	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.874	p.S292G	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	99	0	0	44	40	47.62	-	-	-	G	62749215	A	G	62749215	3	3	314	1	0	0	0	0	1	0	0	0	17143	72	3	5	813	5	USP15	12	62749215	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	9678014	62749215	71102680	33	35228										
PLXNC1	0	genome.wustl.edu	37	chr12	94563009	94563009	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gacctgacatccgtttatggCaccgtggtaatgaacaggac	11	10	0	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	94563009	94563009	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	silent	c.1143	p.G381	1.000	superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	185	0	0	142	25	14.97	-	-	-	T	94563009	C	T	94563009	2	4	314	1	0	0	0	0	0	0	0	1	12200	697	25	4		4	PLXNC1	12	94563009	Silent	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	31813794	94563009	39288886	34	35229										
KLHL28	0	genome.wustl.edu	37	chr14	45414398	45414398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gtttacaagtgcgatcatcaCgaataagatgatttgcttca	8	7	3	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	14	45414398	45414398	C	T	SNP	KLHL28	ENST00000396128	human	ensembl	69_37n	-1	known	missense	c.734	p.R245H	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454	183	0	0	160	31	16.23	-	-	-	T	45414398	C	T	45414398	3	4	314	1	0	0	0	0	1	0	0	0	8435	536	19	1	997	1	KLHL28	14	45414398	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		45414398	61935142	35	35230										
LCMT2	0	genome.wustl.edu	37	chr15	43621247	43621247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	cacttctgttgttgaatgccGccaacaacacaaagtggaat	8	10	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	43621247	43621247	G	A	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.1441	p.R481W	0.999	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	127	0	0	104	31	22.96	-	-	-	A	43621247	G	A	43621247	3	1	314	1	0	0	0	0	1	0	0	0	8733	1086	38	1	623	1	LCMT2	15	43621247	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		43621247	58910145	36	35231										
TP53BP1	0	genome.wustl.edu	37	chr15	43708431	43708431	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	caaaagtcttacctaagctgAtatctgctgcctttgtaaga	7	9	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	43708431	43708431	A	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.4865	p.I1622S	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	246	0	0	116	87	42.86	-	-	-	C	43708431	A	C	43708431	3	2	314	1	0	0	0	0	1	0	0	0	16479	333	12	5	1096	5	TP53BP1	15	43708431	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	87184	43708431	58822961	37	35232										
SIN3A	0	genome.wustl.edu	37	chr15	75688794	75688794	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gcttcttctgtattgcttccAgaacccggattgttgccaga	9	11	2	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	75688794	75688794	A	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.1898	p.L633P	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	185	0	0	84	70	45.45	-	-	-	G	75688794	A	G	75688794	3	3	314	1	0	0	0	0	1	0	0	0	14414	188	7	5	1959	5	SIN3A	15	75688794	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	31980363	75688794	26842598	38	35233										
KIAA0430	0	genome.wustl.edu	37	chr16	15724259	15724259	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	atctgatcagctcgttagcaTgatgcagcagtgcttctgag	11	9	3	3			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	16	15724259	15724259	T	A	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.1454	p.H485L	1.000	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	121	0	0	159	33	17.19	-	-	-	A	15724259	T	A	15724259	3	1	314	1	0	0	0	0	1	0	0	0	8229	1464	51	5	3861	5	KIAA0430	16	15724259	Missense_Mutation	SNP	T	TCGA-AO-A03O-01A-11W-A019-09		15724259	74630494	39	35234										
TMC5	0	genome.wustl.edu	37	chr16	19490813	19490813	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ttctgatggattttgtgttcTctttagtcaattccttcctg	7	8	3	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	16	19490813	19490813	T	A	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.2230	p.S744T	0.833	pfam_TMC	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	306	0	0	260	122	31.77	-	-	-	A	19490813	T	A	19490813	3	1	314	1	0	0	0	0	1	0	0	0	16083	1551	54	5	2590	5	TMC5	16	19490813	Missense_Mutation	SNP	T	TCGA-AO-A03O-01A-11W-A019-09	3766554	19490813	70863940	40	35235										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	115	0	0	26	72	73.47	-	-	-	T	7578406	C	T	7578406	3	4	314	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		7578406	73616804	41	35236										
ACACA	0	genome.wustl.edu	37	chr17	35641834	35641834	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	atctattttctttctgtctcGgccctgctttactaggtgca	7	11	4	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	35641834	35641834	G	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	nonsense	c.376	p.R126*	1.000	superfamily_PreATP-grasp_fold	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	311	0	0	202	56	21.62	-	-	-	A	35641834	G	A	35641834	4	1	314	1	0	0	0	0	0	1	0	0	106	1124	39	1	6987	1	ACACA	17	35641834	Nonsense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	28063428	35641834	45553376	42	35237										
ENGASE	0	genome.wustl.edu	37	chr17	77079103	77079103	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tctccctctgtctcttcagtCgttggagctgatccgaaagc	9	13	4	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	77079103	77079103	C	T	SNP	ENGASE	ENST00000579016	human	ensembl	69_37n	1	known	missense	c.1040	p.S347L	1.000	pfam_Glyco_hydro_85,pfscan_BRCT_dom	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	64	0	0	28	5	14.71	-	-	-	T	77079103	C	T	77079103	3	4	314	1	0	0	0	0	1	0	0	0	5155	898	31	1	1070	1	ENGASE	17	77079103	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	41437269	77079103	4116107	43	35238										
RGL3	0	genome.wustl.edu	37	chr19	11512791	11512791	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ctctgcagctgctggatgcgGgccaggatctcccactcctg	12	15	2	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	19	11512791	11512791	G	C	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	silent	c.1380	p.A460	0.995	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	23	0	0	15	5	25	-	-	-	C	11512791	G	C	11512791	2	2	314	1	0	0	0	0	0	0	0	1	13361	1219	43	4		4	RGL3	19	11512791	Silent	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		11512791	47616192	44	35239										
FPR3	0	genome.wustl.edu	37	chr19	52327516	52327516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tacaataagtactacgaatgGggacacatactgtattttca	7	7	1	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	19	52327516	52327516	G	A	SNP	FPR3	ENST00000339223	human	ensembl	69_37n	1	known	missense	c.515	p.G172E	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	FPR3	HGNC	ENSG00000187474	476	0	0	421	73	14.78	-	-	-	A	52327516	G	A	52327516	3	1	314	1	0	0	0	0	1	0	0	0	6088	1232	43	4	517	4	FPR3	19	52327516	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	40814725	52327516	6801467	45	35240										
RBBP9	0	genome.wustl.edu	37	chr20	18474608	18474608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	aacaaagatcgcacctcatgGccgcgatggccccagaactg	10	14	1	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	20	18474608	18474608	G	T	SNP	RBBP9	ENST00000337227	human	ensembl	69_37n	-1	known	missense	c.242	p.A81D	1.000	pfam_DUF1234_Hydrolase	pfam_DUF1234_Hydrolase	-	no_errors	RBBP9	HGNC	ENSG00000089050	93	0	0	76	22	22.45	-	-	-	T	18474608	G	T	18474608	3	4	314	1	0	0	0	0	1	0	0	0	13189	1203	42	4	330	4	RBBP9	20	18474608	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09		18474608	44550912	46	35241										
MCM3AP	0	genome.wustl.edu	37	chr21	47664999	47664999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ctcttctgtcatggaaaaagCggccactaaactcatggcca	8	12	4	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	21	47664999	47664999	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4760	p.R1587H	0.992	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	94	0	0	108	20	15.5	-	-	-	T	47664999	C	T	47664999	3	4	314	1	0	0	0	0	1	0	0	0	9459	768	27	1	1206	1	MCM3AP	21	47664999	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		47664999	464896	47	35242										
MICAL3	0	genome.wustl.edu	37	chr22	18384696	18384696	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	atgatcacttcaaattcataCtctgacacaggatgagtctt	6	9	5	3			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	22	18384696	18384696	C	A	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.639	p.E213D	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	97	0	0	121	21	14.79	-	-	-	A	18384696	C	A	18384696	3	1	314	1	0	0	0	0	1	0	0	0	9642	564	20	4	6218	4	MICAL3	22	18384696	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09		18384696	32919870	48	35243										
SFI1	0	genome.wustl.edu	37	chr22	31971257	31971260	+	Frame_Shift_Del	DEL	ATAC	ATAC	-													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	catgtcactgtgctccagatAtacttctgtgactggcagca							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	ATAC	ATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	22	31971257	31971260	ATAC	-	DEL	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	frame_shift_del	c.963_966	p.Y322fs	0.006:0.016:0.395:0.766	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	114	0	0	97	37	27.61	-	-	-	-	31971260	ATAC	-	31971257	7	5	314	1	0	1	0	1	0	0	0	0	14244	439	16	0	997	0	SFI1	22	31971257	Frame_Shift_Del	DEL	ATAC	TCGA-AO-A03O-01A-11W-A019-09	13586561	31971257	19333309	49	35244										
CD99	0	genome.wustl.edu	37	chrX	2641359	2641359	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tgtttttgtcttgcaggaaaAggaggcagtgatggtggagg	17	3	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	2641359	2641359	A	T	SNP	CD99	ENST00000381192	human	ensembl	69_37n	1	known	missense	c.315	p.K105N	0.001	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	136	0	0	70	25	25.77	-	-	-	T	2641359	A	T	2641359	3	4	314	1	0	0	0	0	1	0	0	0	3079	69	3	5	341	5	CD99	23	2641359	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09		2641359	152629201	50	35245										
SHROOM2	0	genome.wustl.edu	37	chrX	9863334	9863335	+	Frame_Shift_Del	DEL	GC	GC	-													0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agccctcctcaggtgaggggGctcagcagctgtgaccagaa							TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	9863334	9863335	GC	-	DEL	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	frame_shift_del	c.1386_1387	p.L463fs	0.000:0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	15	0	0	9	4	30.77	-	-	-	-	9863335	GC	-	9863334	7	5	314	1	0	1	0	1	0	0	0	0	14383	1190	42	0	1400	0	SHROOM2	23	9863334	Frame_Shift_Del	DEL	GC	TCGA-AO-A03O-01A-11W-A019-09	7221975	9863334	145407226	51	35246										
GPR64	0	genome.wustl.edu	37	chrX	19017264	19017264	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	actggtttttcgctgggctcCcagttgcttcttctttttaa	8	10	2	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	19017264	19017264	C	G	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.2464	p.G822R	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	300	1	0.33	275	79	22.32	-	-	-	G	19017264	C	G	19017264	3	3	314	1	0	0	0	0	1	0	0	0	6755	632	22	4	605	4	GPR64	23	19017264	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	9153930	19017264	136253296	52	35247										
FAM47C	0	genome.wustl.edu	37	chrX	37027607	37027607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gctgcctcccgaggctggagTgtcccatctctgcccggaac	12	16	1	0			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	37027607	37027607	T	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.1124	p.V375E	0.024	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	317	0	0	283	68	19.37	-	-	-	A	37027607	T	A	37027607	3	1	314	1	0	0	0	0	1	0	0	0	5617	1696	59	5	1126	5	FAM47C	23	37027607	Missense_Mutation	SNP	T	TCGA-AO-A03O-01A-11W-A019-09	18010343	37027607	118242953	53	35248										
LAS1L	0	genome.wustl.edu	37	chrX	64737980	64737980	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agaaaggccccacctccattCtgtcttcctcttcatcatct	4	16	6	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	64737980	64737980	C	G	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.1814	p.R605T	0.029	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	60	0	0	55	12	17.91	-	-	-	G	64737980	C	G	64737980	3	3	314	1	0	0	0	0	1	0	0	0	8690	913	32	2	402	2	LAS1L	23	64737980	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	27710373	64737980	90532580	54	35249										
DGAT2L6	0	genome.wustl.edu	37	chrX	69424167	69424167	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	ctttgcagggcataccttgtCccttcatattcctttggtga	8	11	1	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	69424167	69424167	C	G	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	silent	c.660	p.V220	0.988	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	77	0	0	58	12	17.14	-	-	-	G	69424167	C	G	69424167	2	3	314	1	0	0	0	0	0	0	0	1	4495	842	30	2		2	DGAT2L6	23	69424167	Silent	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	4686187	69424167	85846393	55	35250										
ATRX	0	genome.wustl.edu	37	chrX	76912112	76912112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	tcactaactcctgattcctgAaaatcagaatcttctgaatc	4	11	4	4			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	76912112	76912112	A	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.4152	p.F1384L	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	297	0	0	195	108	35.64	-	-	-	T	76912112	A	T	76912112	3	4	314	1	0	0	0	0	1	0	0	0	1212	243	9	5	3418	5	ATRX	23	76912112	Missense_Mutation	SNP	A	TCGA-AO-A03O-01A-11W-A019-09	7487945	76912112	78358448	56	35251										
ATP7A	0	genome.wustl.edu	37	chrX	77289124	77289124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	agctggacactgaaaccttgGgtacctgcatagatttccag	10	10	0	2			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	77289124	77289124	G	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.3316	p.G1106R	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	223	0	0	212	43	16.86	-	-	-	C	77289124	G	C	77289124	3	2	314	1	0	0	0	0	1	0	0	0	1194	1232	43	4	3378	4	ATP7A	23	77289124	Missense_Mutation	SNP	G	TCGA-AO-A03O-01A-11W-A019-09	377012	77289124	77981436	57	35252										
ARMCX2	0	genome.wustl.edu	37	chrX	100910988	100910988	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0689655172413793	4	0.989410657549952	0.76843910806175	1.58490566037736	0.30188679245283	0.523809523809524	1	0	gcaaaattcgaaaggattttCaaaatctcaaccttgatttt	5	7	2	1			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	100910988	100910988	C	G	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	missense	c.1587	p.L529F	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	385	0	0	417	94	18.29	-	-	-	G	100910988	C	G	100910988	3	3	314	1	0	0	0	0	1	0	0	0	964	825	29	2	315	2	ARMCX2	23	100910988	Missense_Mutation	SNP	C	TCGA-AO-A03O-01A-11W-A019-09	23621864	100910988	54359572	58	35253										
DIO1	0	genome.wustl.edu	37	chr1	54370427	54370427	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ttcaagaggcttattgaagaCtttagttccatagcagattt	8	6	1	4			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	1	54370427	54370427	C	T	SNP	DIO1	ENST00000524406	human	ensembl	69_37n	1	putative	silent	c.39	p.D13	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO1	HGNC	ENSG00000211452	398	0	0	160	75	31.91	-	-	-	T	54370427	C	T	54370427	2	4	315	1	0	0	0	0	0	0	0	1	4560	564	20	4		4	DIO1	1	54370427	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		54370427	194880194	1	35254										
AMY2B	0	genome.wustl.edu	37	chr1	104114362	104114362	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gctcttgaatgtgagcgataTttagctcccaagggatttgg	12	7	1	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	1	104114362	104114362	T	C	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	silent	c.138	p.Y46	0.995	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	459	0	0	262	99	27.42	-	-	-	C	104114362	T	C	104114362	2	2	315	1	0	0	0	0	0	0	0	1	595	1500	52	5		5	AMY2B	1	104114362	Silent	SNP	T	TCGA-AO-A03P-01A-11W-A019-09	49743935	104114362	145136259	2	35255										
OBSCN	0	genome.wustl.edu	37	chr1	228479785	228479785	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gtgtgagctgcagatctgtgGcctggccatggcggacgccg	17	11	1	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	1	228479785	228479785	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.10526	p.G3509V	0.015	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	303	0	0	112	51	31.29	-	-	-	T	228479785	G	T	228479785	3	4	315	1	0	0	0	0	1	0	0	0	10885	1203	42	4	10676	4	OBSCN	1	228479785	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	124365423	228479785	20770836	3	35256										
NLRC4	0	genome.wustl.edu	37	chr2	32476071	32476071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	agtcagggcaccaaactgccGtatgtgcctcaggcactcag	11	13	3	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	2	32476071	32476071	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.862	p.R288W	0.614	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	304	0	0	179	67	27.24	-	-	-	A	32476071	G	A	32476071	3	1	315	1	0	0	0	0	1	0	0	0	10541	1144	40	1	2236	1	NLRC4	2	32476071	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09		32476071	210723302	4	35257										
SLC20A1	0	genome.wustl.edu	37	chr2	113417065	113417065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gtgaacagaagggcgaagaaAtggagaagctgacatggcct	15	6	0	5			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	2	113417065	113417065	A	C	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	missense	c.1333	p.M445L	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	394	0	0	245	63	20.45	-	-	-	C	113417065	A	C	113417065	3	2	315	1	0	0	0	0	1	0	0	0	14527	101	4	5	1359	5	SLC20A1	2	113417065	Missense_Mutation	SNP	A	TCGA-AO-A03P-01A-11W-A019-09	80940994	113417065	129782308	5	35258										
ARL5A	0	genome.wustl.edu	37	chr2	152668924	152668924	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	agttacagaaatcctctctcTgtctgtactgtccacaacaa	5	12	3	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	2	152668924	152668924	T	C	SNP	ARL5A	ENST00000295087	human	ensembl	69_37n	-1	known	missense	c.286	p.R96G	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5A	HGNC	ENSG00000162980	98	0	0	58	17	22.67	-	-	-	C	152668924	T	C	152668924	3	2	315	1	0	0	0	0	1	0	0	0	943	1588	55	5	265	5	ARL5A	2	152668924	Missense_Mutation	SNP	T	TCGA-AO-A03P-01A-11W-A019-09	39251859	152668924	90530449	6	35259										
CAPN10	0	genome.wustl.edu	37	chr2	241534504	241534504	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	caagggccagtcagcaggagGctgccggaacaacagcggct	15	12	1	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	2	241534504	241534504	G	C	SNP	CAPN10	ENST00000391984	human	ensembl	69_37n	1	known	missense	c.1061	p.G354A	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN10	HGNC	ENSG00000142330	65	0	0	11	4	26.67	-	-	-	C	241534504	G	C	241534504	3	2	315	1	0	0	0	0	1	0	0	0	2648	1203	42	4	1087	4	CAPN10	2	241534504	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	88865580	241534504	1664869	7	35260										
FBLN2	0	genome.wustl.edu	37	chr3	13612490	13612491	+	Frame_Shift_Ins	INS	-	-	G													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gtggaagcagcaacagccctINSggggggtgaggtccaggcgg							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	3	13612490	13612491	-	G	INS	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	frame_shift_ins	c.635_636	p.E215fs	0.000:0.000	NULL	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	20	0	0	4	2	33.33	-	-	-	G	13612491	-	G	13612490	7	5	315	1	0	1	1	0	0	0	0	0	5745	1580	55	0		0	FBLN2	3	13612490	Frame_Shift_Ins	INS	-	TCGA-AO-A03P-01A-11W-A019-09		13612490	184409940	8	35261										
QARS	0	genome.wustl.edu	37	chr3	49140800	49140800	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gcatgtccacttcattcttgAtcattttgccatctgcccac	5	14	4	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	3	49140800	49140800	A	C	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.494	p.I165S	1.000	pfam_Gln-tRNA-synth_Ib_RNA-bd_2	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	93	0	0	38	11	22.45	-	-	-	C	49140800	A	C	49140800	3	2	315	1	0	0	0	0	1	0	0	0	12954	333	12	5	1913	5	QARS	3	49140800	Missense_Mutation	SNP	A	TCGA-AO-A03P-01A-11W-A019-09	35528310	49140800	148881630	9	35262										
OR5K3	0	genome.wustl.edu	37	chr3	98110241	98110241	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	acttgtgcatctcactttctCtctgtgtcaatattctgtga	6	10	5	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	3	98110241	98110241	C	A	SNP	OR5K3	ENST00000383695	human	ensembl	69_37n	1	known	silent	c.732	p.L244	0.010	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536	752	1	0.13	588	183	23.74	-	-	-	A	98110241	C	A	98110241	2	1	315	1	0	0	0	0	0	0	0	1	11241	900	32	2		2	OR5K3	3	98110241	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	48969441	98110241	99912189	10	35263										
ITGB5	0	genome.wustl.edu	37	chr3	124487900	124487900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	atcacctcatccctgcatagGctgtggcaggtctggttgtc	11	12	3	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	3	124487900	124487900	G	A	SNP	ITGB5	ENST00000481591	human	ensembl	69_37n	-1	putative	missense	c.1046	p.A349V	0.122	pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITGB5	HGNC	ENSG00000082781	176	0	0	39	44	52.38	-	-	-	A	124487900	G	A	124487900	3	1	315	1	0	0	0	0	1	0	0	0	7952	1194	42	4	438	4	ITGB5	3	124487900	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	26377659	124487900	73534530	11	35264										
LETM1	0	genome.wustl.edu	37	chr4	1821128	1821130	+	In_Frame_Del	DEL	CTT	CTT	-													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tccttctccttggtgagtgaCttcttctgctcctgcagctt							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	1821128	1821130	CTT	-	DEL	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	in_frame_del	c.1680_1678	p.K560in_frame_del	0.653:0.654:0.678	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	163	0	0	51	12	18.75	-	-	-	-	1821130	CTT	-	1821128	7	5	315	1	0	1	0	1	0	0	0	0	8788	564	20	0	555	0	LETM1	4	1821128	In_Frame_Del	DEL	CTT	TCGA-AO-A03P-01A-11W-A019-09		1821128	189333148	12	35265										
SPATA18	0	genome.wustl.edu	37	chr4	52917745	52917745	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ggggaggatggaaacacctgCcgcgctctgagccccccaga	14	14	1	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	52917745	52917745	C	G	SNP	SPATA18	ENST00000506829	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	SPATA18	HGNC	ENSG00000163071	72	0	0	23	5	17.86	-	-	-	G	52917745	C	G	52917745	1	3	315	0	1	0	0	0	0	0	0	0	15094	754	26	4		4	SPATA18	4	52917745	RNA	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	51096617	52917745	138236531	13	35266										
PRSS12	0	genome.wustl.edu	37	chr4	119203269	119203269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ctccctggcagctgtccacgCgtttgtgttcatggaggttt	12	11	1	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	119203269	119203269	C	T	SNP	PRSS12	ENST00000296498	human	ensembl	69_37n	-1	known	missense	c.2450	p.R817H	0.262	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Srcr_rcpt,pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Kringle,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Srcr_rcpt,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099	554	0	0	390	115	22.77	-	-	-	T	119203269	C	T	119203269	3	4	315	1	0	0	0	0	1	0	0	0	12695	768	27	1	181	1	PRSS12	4	119203269	Missense_Mutation	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	66285524	119203269	71951007	14	35267										
MFSD8	0	genome.wustl.edu	37	chr4	128842873	128842873	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ttccattggagacttccaaaGaccaataataatttccccaa	4	11	0	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	128842873	128842873	G	A	SNP	MFSD8	ENST00000296468	human	ensembl	69_37n	-1	known	missense	c.1156	p.L386F	0.722	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073	97	0	0	100	34	25.37	-	-	-	A	128842873	G	A	128842873	3	1	315	1	0	0	0	0	1	0	0	0	9609	942	33	2	408	2	MFSD8	4	128842873	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	9639604	128842873	62311403	15	35268										
SMAD1	0	genome.wustl.edu	37	chr4	146475147	146475147	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	aaccatggatttgagacagtCtatgagcttacaaaaatgtg	9	6	1	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	146475147	146475147	C	T	SNP	SMAD1	ENST00000302085	human	ensembl	69_37n	1	known	silent	c.1209	p.V403	0.993	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365	491	0	0	338	98	22.48	-	-	-	T	146475147	C	T	146475147	2	4	315	1	0	0	0	0	0	0	0	1	14846	900	32	2		2	SMAD1	4	146475147	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	17632274	146475147	44679129	16	35269										
GALNTL6	0	genome.wustl.edu	37	chr4	173961206	173961206	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	cagtggatttttgaacacatTaatatgactgttttagaaaa	7	4	0	3			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	4	173961206	173961206	T	A	SNP	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	silent	c.1761	p.I587	0.999	superfamily_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	394	0	0	368	89	19.47	-	-	-	A	173961206	T	A	173961206	2	1	315	1	0	0	0	0	0	0	0	1	6275	1742	61	5		5	GALNTL6	4	173961206	Silent	SNP	T	TCGA-AO-A03P-01A-11W-A019-09	27486059	173961206	17193070	17	35270										
ERBB2IP	0	genome.wustl.edu	37	chr5	65346627	65346628	+	Frame_Shift_Del	DEL	AG	AG	-													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tcagatgatacaaaggaaacAgattctttatcagatgaagt							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	5	65346627	65346628	AG	-	DEL	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	frame_shift_del	c.1920_1921	p.D641fs	0.607:1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	259	0	0	195	37	15.95	-	-	-	-	65346628	AG	-	65346627	7	5	315	1	0	1	0	1	0	0	0	0	5244	175	7	0	1990	0	ERBB2IP	5	65346627	Frame_Shift_Del	DEL	AG	TCGA-AO-A03P-01A-11W-A019-09		65346627	115568633	18	35271										
PCDHA2	0	genome.wustl.edu	37	chr5	140175999	140175999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tgtcagcgtgggatgcggacGcgcaggagaacgcgctggtg	19	9	1	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	5	140175999	140175999	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.1450	p.A484T	0.280	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	74	0	0	26	6	18.75	-	-	-	A	140175999	G	A	140175999	3	1	315	1	0	0	0	0	1	0	0	0	11597	1087	38	1	1452	1	PCDHA2	5	140175999	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	74829372	140175999	40739261	19	35272										
GPX5	0	genome.wustl.edu	37	chr6	28501767	28501767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	cctcatccctctgagattttGggcacattcaaatctatatc	5	12	4	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	6	28501767	28501767	G	T	SNP	GPX5	ENST00000412168	human	ensembl	69_37n	1	known	missense	c.489	p.L163F	0.701	superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	no_errors	GPX5	HGNC	ENSG00000224586	815	1	0.12	623	168	21.24	-	-	-	T	28501767	G	T	28501767	3	4	315	1	0	0	0	0	1	0	0	0	6794	1339	47	4	507	4	GPX5	6	28501767	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09		28501767	142613300	20	35273										
TREM1	0	genome.wustl.edu	37	chr6	41248835	41248835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ggccttagtggtggtaggagGaatcttatacacattctggg	14	6	2	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	6	41248835	41248835	G	A	SNP	TREM1	ENST00000244709	human	ensembl	69_37n	-1	known	missense	c.463	p.P155S	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	138	0	0	98	30	23.44	-	-	-	A	41248835	G	A	41248835	3	1	315	1	0	0	0	0	1	0	0	0	16566	1174	41	2	249	2	TREM1	6	41248835	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	12747068	41248835	129866232	21	35274										
TDRD6	0	genome.wustl.edu	37	chr6	46657105	46657105	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	caaagattgaattttattgcTcctttgagcatgtgtattat	7	5	0	3			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	6	46657105	46657105	T	A	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.1240	p.S414T	0.521	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	138	0	0	39	11	22	-	-	-	A	46657105	T	A	46657105	3	1	315	1	0	0	0	0	1	0	0	0	15829	1551	54	5	1242	5	TDRD6	6	46657105	Missense_Mutation	SNP	T	TCGA-AO-A03P-01A-11W-A019-09	5408270	46657105	124457962	22	35275										
UTRN	0	genome.wustl.edu	37	chr6	144838085	144838085	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ctagatacaacaaaattaagGtattatgattggagagtctc	8	5	1	3			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	6	144838085	144838085	G	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	splice_site	c.5541+1	e38+1	1.000	-	-	-	no_errors	UTRN	HGNC	ENSG00000152818	120	0	0	105	18	14.63	-	-	-	T	144838085	G	T	144838085	5	4	315	1	0	0	0	0	0	0	1	0	17200	1275	44	4	5692	4	UTRN	6	144838085	Splice_Site	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	98180980	144838085	26276982	23	35276										
CDHR3	0	genome.wustl.edu	37	chr7	105655584	105655584	+	Frame_Shift_Del	DEL	C	C	-													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gtgatctagactacgaaaatCcaagtaacctagcagccggc							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	7	105655584	105655584	C	-	DEL	CDHR3	ENST00000317716	human	ensembl	69_37n	1	known	frame_shift_del	c.1252	p.P418fs	0.389	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536	133	0	0	66	17	20.24	-	-	-	-	105655584	C	-	105655584	7	5	315	1	0	1	0	1	0	0	0	0	3149	855	30	0	1290	0	CDHR3	7	105655584	Frame_Shift_Del	DEL	C	TCGA-AO-A03P-01A-11W-A019-09		105655584	53483079	24	35277										
ZCCHC6	0	genome.wustl.edu	37	chr9	88937958	88937958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tttcacgtcttcatacttagCagcttcgcctaactcatcat	4	13	5	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	9	88937958	88937958	C	T	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.2707	p.A903T	0.008	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	350	0	0	237	61	20.47	-	-	-	T	88937958	C	T	88937958	3	4	315	1	0	0	0	0	1	0	0	0	17688	710	25	4	1840	4	ZCCHC6	9	88937958	Missense_Mutation	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		88937958	52275473	25	35278										
IARS	0	genome.wustl.edu	37	chr9	95007281	95007281	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	caaattgcgcagtcccacctGtggcctgatcaaaggtgtac	10	12	1	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	9	95007281	95007281	G	C	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.2864	p.T955R	0.070	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	162	0	0	112	25	18.25	-	-	-	C	95007281	G	C	95007281	3	2	315	1	0	0	0	0	1	0	0	0	7527	1377	48	4	956	4	IARS	9	95007281	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	6069323	95007281	46206150	26	35279										
GATA3	0	genome.wustl.edu	37	chr10	8115978	8115979	+	Frame_Shift_Ins	INS	-	-	T													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ctccagcatggtcaccgccaINStgggttagagccctgctcga							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	10	8115978	8115979	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1327_1328	p.M443fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	158	0	0	96	43	30.94	-	-	-	T	8115979	-	T	8115978	7	5	315	1	0	1	1	0	0	0	0	0	6305	217	8	0	1345	0	GATA3	10	8115978	Frame_Shift_Ins	INS	-	TCGA-AO-A03P-01A-11W-A019-09		8115978	127418769	27	35280										
DDX21	0	genome.wustl.edu	37	chr10	70737298	70737298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	acaacaggcttttggattccGtgcctcccactgccattagt	8	13	0	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	10	70737298	70737298	G	A	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	1	known	missense	c.1756	p.V586M	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	453	0	0	349	110	23.91	-	-	-	A	70737298	G	A	70737298	3	1	315	1	0	0	0	0	1	0	0	0	4380	1145	40	1	1802	1	DDX21	10	70737298	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	62621320	70737298	64797449	28	35281										
PLCE1	0	genome.wustl.edu	37	chr10	96058292	96058293	+	Frame_Shift_Ins	INS	-	-	T													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tgtcgcaggtattctcagaaINSactgacccagcacaccgcct							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	10	96058292	96058293	-	T	INS	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	frame_shift_ins	c.5324_5325	p.K1775fs	1.000:1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	232	0	0	159	102	39.08	-	-	-	T	96058293	-	T	96058292	7	5	315	1	0	1	1	0	0	0	0	0	12108	14	1	0	5700	0	PLCE1	10	96058292	Frame_Shift_Ins	INS	-	TCGA-AO-A03P-01A-11W-A019-09	25320994	96058292	39476455	29	35282										
SLC6A5	0	genome.wustl.edu	37	chr11	20652303	20652303	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gccggcttcgtcatcttctcCgttatcggcttcatggccaa	9	14	4	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	11	20652303	20652303	C	T	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	silent	c.1566	p.S522	0.129	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	204	0	0	40	77	65.81	-	-	-	T	20652303	C	T	20652303	2	4	315	1	0	0	0	0	0	0	0	1	14776	639	23	1		1	SLC6A5	11	20652303	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		20652303	114354213	30	35283										
PRDM11	0	genome.wustl.edu	37	chr11	45245850	45245850	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ggtcccattcatctctctgtGctgagacagggcaaaagtcc	10	12	3	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	11	45245850	45245850	G	A	SNP	PRDM11	ENST00000263765	human	ensembl	69_37n	1	known	silent	c.927	p.V309	0.451	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485	589	0	0	289	64	18.13	-	-	-	A	45245850	G	A	45245850	2	1	315	1	0	0	0	0	0	0	0	1	12533	1306	46	4		4	PRDM11	11	45245850	Silent	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	24593547	45245850	89760666	31	35284										
TM7SF2	0	genome.wustl.edu	37	chr11	64883379	64883379	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ctacaggggtgtcacacctgCtgccctacttctacctcctc	7	17	2	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	11	64883379	64883379	C	T	SNP	TM7SF2	ENST00000279263	human	ensembl	69_37n	1	known	silent	c.1111	p.L371	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	-	no_errors	TM7SF2	HGNC	ENSG00000149809	40	0	0	4	10	71.43	-	-	-	T	64883379	C	T	64883379	2	4	315	1	0	0	0	0	0	0	0	1	16069	796	28	4		4	TM7SF2	11	64883379	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	19637529	64883379	70123137	32	35285										
ITGA7	0	genome.wustl.edu	37	chr12	56091275	56091275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	acagttgggctgctccaggtCgatgcttcgtggagcaatag	14	9	0	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	12	56091275	56091275	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	missense	c.1597	p.D533N	0.998	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	178	0	0	74	25	25.25	-	-	-	T	56091275	C	T	56091275	3	4	315	1	0	0	0	0	1	0	0	0	7935	884	31	1	2012	1	ITGA7	12	56091275	Missense_Mutation	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		56091275	77760620	33	35286										
CDK2	0	genome.wustl.edu	37	chr12	56361872	56361872	+	Frame_Shift_Del	DEL	G	G	-													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	acagaaaataaactctacctGgtttttgaatttctgcacca							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	12	56361872	56361872	G	-	DEL	CDK2	ENST00000266970	human	ensembl	69_37n	1	known	frame_shift_del	c.234	p.V79fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK2	HGNC	ENSG00000123374	349	2	0.57	177	45	20.18	-	-	-	-	56361872	G	-	56361872	7	5	315	1	0	1	0	1	0	0	0	0	3165	1335	47	0	244	0	CDK2	12	56361872	Frame_Shift_Del	DEL	G	TCGA-AO-A03P-01A-11W-A019-09	270597	56361872	77490023	34	35287										
MDM1	0	genome.wustl.edu	37	chr12	68720671	68720671	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tgtgattttggtgtttccggGgcttctggttctggtgatgc	15	6	2	2			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	12	68720671	68720671	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	silent	c.264	p.A88	0.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	291	0	0	193	42	17.87	-	-	-	A	68720671	G	A	68720671	2	1	315	1	0	0	0	0	0	0	0	1	9483	1219	43	4		4	MDM1	12	68720671	Silent	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	12358799	68720671	65131224	35	35288										
RAP2A	0	genome.wustl.edu	37	chr13	98086995	98086995	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tcgtcaaccagcagagcttcCaggacatcaagcccatgcgg	10	14	2	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	13	98086995	98086995	C	T	SNP	RAP2A	ENST00000245304	human	ensembl	69_37n	1	known	nonsense	c.271	p.Q91*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2A	HGNC	ENSG00000125249	74	0	0	19	12	38.71	-	-	-	T	98086995	C	T	98086995	4	4	315	1	0	0	0	0	0	1	0	0	13123	595	21	4	273	4	RAP2A	13	98086995	Nonsense_Mutation	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		98086995	17082883	36	35289										
RYR3	0	genome.wustl.edu	37	chr15	34130643	34130643	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tctgtgaagaggaatgtcacCgacttcctgaagagagcaac	11	9	2	4			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	15	34130643	34130643	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.12462	p.T4154	0.055	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	268	1	0.37	137	56	28.72	-	-	-	T	34130643	C	T	34130643	2	4	315	1	0	0	0	0	0	0	0	1	13856	639	23	1		1	RYR3	15	34130643	Silent	SNP	C	TCGA-AO-A03P-01A-11W-A019-09		34130643	68400749	37	35290										
HOMER2	0	genome.wustl.edu	37	chr15	83523512	83523512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ccgtgcattgctctcccgaaGggtctgcagctcgatctccc	10	16	3	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	15	83523512	83523512	G	A	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	missense	c.568	p.L190F	1.000	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	83	0	0	42	14	25	-	-	-	A	83523512	G	A	83523512	3	1	315	1	0	0	0	0	1	0	0	0	7330	1000	35	4	512	4	HOMER2	15	83523512	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	49392869	83523512	19007880	38	35291										
MVP	0	genome.wustl.edu	37	chr16	29848117	29848117	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	cgccgcactggggaggagtgGctggtaacagtgcaggacac	17	10	0	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	16	29848117	29848117	G	A	SNP	MVP	ENST00000357402	human	ensembl	69_37n	1	known	nonsense	c.747	p.W249*	1.000	pfam_Vault_N	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	40	0	0	40	9	18.37	-	-	-	A	29848117	G	A	29848117	4	1	315	1	0	0	0	0	0	1	0	0	10068	1212	42	4	769	4	MVP	16	29848117	Nonsense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09		29848117	60506636	39	35292										
CLEC18A	0	genome.wustl.edu	37	chr16	69985339	69985339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	tcctggccctccttggcaccGcctgggcagaggtgtggcca	14	15	0	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	16	69985339	69985339	G	A	SNP	CLEC18A	ENST00000449317	human	ensembl	69_37n	1	known	missense	c.70	p.A24T	0.022	NULL	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322	31	0	0	7	2	22.22	-	-	-	A	69985339	G	A	69985339	3	1	315	1	0	0	0	0	1	0	0	0	3532	1087	38	1	72	1	CLEC18A	16	69985339	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	40137222	69985339	20369414	40	35293										
KRT25	0	genome.wustl.edu	37	chr17	38910684	38910684	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	cctggcattatcgatctgcaGaacagcattagcattgctgg	10	10	1	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	17	38910684	38910684	G	T	SNP	KRT25	ENST00000312150	human	ensembl	69_37n	-1	known	missense	c.466	p.L156M	0.205	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897	224	0	0	253	41	13.85	-	-	-	T	38910684	G	T	38910684	3	4	315	1	0	0	0	0	1	0	0	0	8515	933	33	2	914	2	KRT25	17	38910684	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09		38910684	42284526	41	35294										
RAB5C	0	genome.wustl.edu	37	chr17	40280782	40280783	+	Frame_Shift_Ins	INS	-	-	T													0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	gatctcaaacttgactgttgINStgtcatccaggcagacagtc							TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	17	40280782	40280783	-	T	INS	RAB5C	ENST00000346213	human	ensembl	69_37n	-1	known	frame_shift_ins	c.203_202	p.T68fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774	338	0	0	176	36	16.98	-	-	-	T	40280783	-	T	40280782	7	5	315	1	0	1	1	0	0	0	0	0	13033	1377	48	0	463	0	RAB5C	17	40280782	Frame_Shift_Ins	INS	-	TCGA-AO-A03P-01A-11W-A019-09	1370098	40280782	40914428	42	35295										
PPM1E	0	genome.wustl.edu	37	chr17	57049625	57049625	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	aactaatgaagccacacaaaCcagacagagaggtaagtatg	9	8	0	3			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	17	57049625	57049625	C	G	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	missense	c.1105	p.P369A	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	215	0	0	211	56	20.97	-	-	-	G	57049625	C	G	57049625	3	3	315	1	0	0	0	0	1	0	0	0	12415	507	18	4	1123	4	PPM1E	17	57049625	Missense_Mutation	SNP	C	TCGA-AO-A03P-01A-11W-A019-09	16768843	57049625	24145585	43	35296										
KIF4A	0	genome.wustl.edu	37	chrX	69550016	69550016	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ttctttttcagattctctagGaggtaatagccatactctta	6	8	4	1			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	X	69550016	69550016	G	C	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.905	p.G302A	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	368	0	0	314	79	20.1	-	-	-	C	69550016	G	C	69550016	3	2	315	1	0	0	0	0	1	0	0	0	8355	1174	41	2	935	2	KIF4A	23	69550016	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09		69550016	85720544	44	35297										
HCFC1	0	genome.wustl.edu	37	chrX	153220767	153220767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0444444444444444	2	1	0.551351351351351	0	0.689189189189189	0.428571428571429	1	0	ccacaacagtagtggtggccGtgttggtggtgccagtctcg	15	10	1	0			TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	185c5e15-c068-4a72-8d5e-468624bf958a	bac92eb4-e818-4d79-b4b0-b10c31ba6d4e	X	153220767	153220767	G	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.3083	p.T1028K	0.999	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	58	0	0	14	5	26.32	-	-	-	T	153220767	G	T	153220767	3	4	315	1	0	0	0	0	1	0	0	0	7042	1145	40	3	3064	3	HCFC1	23	153220767	Missense_Mutation	SNP	G	TCGA-AO-A03P-01A-11W-A019-09	83670751	153220767	2049793	45	35298										
TMEM57	0	genome.wustl.edu	37	chr1	25824793	25824793	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	atcaggaaatcaaggacctaAaacagaagatagccgaagtc	9	8	2	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	25824793	25824793	A	G	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.1831	p.K611E	0.997	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	207	0	0	94	58	38.16	-	-	-	G	25824793	A	G	25824793	3	3	316	1	0	0	0	0	1	0	0	0	16279	15	1	5	1873	5	TMEM57	1	25824793	Missense_Mutation	SNP	A	TCGA-AO-A03R-01A-21W-A050-09		25824793	223425828	1	35299										
ADPRHL2	0	genome.wustl.edu	37	chr1	36557572	36557573	+	Frame_Shift_Ins	INS	-	-	A													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ggttacaatggcgccatcctINSgcaggccctggctgtgcacc							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	36557572	36557573	-	A	INS	ADPRHL2	ENST00000373178	human	ensembl	69_37n	1	known	frame_shift_ins	c.578_579	p.Q194fs	1.000:1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863	141	0	0	74	33	30.84	-	-	-	A	36557573	-	A	36557572	7	5	316	1	0	1	1	0	0	0	0	0	333	1580	55	0	592	0	ADPRHL2	1	36557572	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09	10732779	36557572	212693049	2	35300										
SORT1	0	genome.wustl.edu	37	chr1	109888491	109888491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ttctccataattccagagccCcaaggtcagcttcttaaaca	5	13	3	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	109888491	109888491	C	T	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	missense	c.845	p.G282E	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	168	0	0	121	15	11.03	-	-	-	T	109888491	C	T	109888491	3	4	316	1	0	0	0	0	1	0	0	0	15024	623	22	4	1702	4	SORT1	1	109888491	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	73330919	109888491	139362130	3	35301										
PI4KB	0	genome.wustl.edu	37	chr1	151266606	151266606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	aacatgtcgccatccaggccGcccatcacctggaaagggaa	10	14	1	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	151266606	151266606	G	A	SNP	PI4KB	ENST00000446339	human	ensembl	69_37n	-1	putative	missense	c.74	p.A25V	0.014	superfamily_Kinase-like_dom	superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PI4KB	HGNC	ENSG00000143393	96	0	0	80	24	22.86	-	-	-	A	151266606	G	A	151266606	3	1	316	1	0	0	0	0	1	0	0	0	11948	1074	38	1	301	1	PI4KB	1	151266606	Missense_Mutation	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	41378115	151266606	97984015	4	35302										
HRNR	0	genome.wustl.edu	37	chr1	152188994	152188994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ggccagatccagacccttgtCggccgtggcccgaagactga	13	14	0	4			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	152188994	152188994	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5111	p.R1704Q	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	34	0	0	12	3	20	-	-	-	T	152188994	C	T	152188994	3	4	316	1	0	0	0	0	1	0	0	0	7410	884	31	1	3445	1	HRNR	1	152188994	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	922388	152188994	97061627	5	35303										
CADM3	0	genome.wustl.edu	37	chr1	159170670	159170670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gccatcatcaatgcagaaggCgggcagtcaggaggggacga	16	9	3	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	159170670	159170670	C	T	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	1	known	silent	c.1257	p.G419	1.000	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	134	0	0	115	26	18.31	-	-	-	T	159170670	C	T	159170670	2	4	316	1	0	0	0	0	0	0	0	1	2593	755	27	1		1	CADM3	1	159170670	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	6981676	159170670	90079951	6	35304										
KLHL20	0	genome.wustl.edu	37	chr1	173703245	173703245	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gtagaagagggcaatgttcaGactcttctgccagctgcttg	12	9	3	3			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	173703245	173703245	G	T	SNP	KLHL20	ENST00000209884	human	ensembl	69_37n	1	known	missense	c.417	p.Q139H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321	219	0	0	149	51	25.5	-	-	-	T	173703245	G	T	173703245	3	4	316	1	0	0	0	0	1	0	0	0	8428	933	33	2	423	2	KLHL20	1	173703245	Missense_Mutation	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	14532575	173703245	75547376	7	35305										
CACNA1E	0	genome.wustl.edu	37	chr1	181689373	181689373	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ccctacggaatttggtggtcTccttgatgagctcaatgaag	11	9	2	3			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	181689373	181689373	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1783	p.S595P	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	398	0	0	371	113	23.25	-	-	-	C	181689373	T	C	181689373	3	2	316	1	0	0	0	0	1	0	0	0	2567	1551	54	5	1837	5	CACNA1E	1	181689373	Missense_Mutation	SNP	T	TCGA-AO-A03R-01A-21W-A050-09	7986128	181689373	67561248	8	35306										
HMCN1	0	genome.wustl.edu	37	chr1	185902884	185902884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	agagtgtgaaattcaacgatGctggagagtatcattgtatg	12	4	2	3			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	185902884	185902884	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.1756	p.A586S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	156	0	0	160	38	19.19	-	-	-	T	185902884	G	T	185902884	3	4	316	1	0	0	0	0	1	0	0	0	7271	1319	46	4	1798	4	HMCN1	1	185902884	Missense_Mutation	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	4213511	185902884	63347737	9	35307										
NAV1	0	genome.wustl.edu	37	chr1	201755667	201755667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gccttctccccctgcacttcCcatgtctctgagtgcaaagg	8	16	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	201755667	201755667	C	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.2957	p.P986L	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	408	1	0.24	338	47	12.18	-	-	-	T	201755667	C	T	201755667	3	4	316	1	0	0	0	0	1	0	0	0	10255	623	22	4	3048	4	NAV1	1	201755667	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	15852783	201755667	47494954	10	35308										
NUP133	0	genome.wustl.edu	37	chr1	229619833	229619833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	agaaaggcagctttcagcaaCttgattttatcttcctgggc	9	9	2	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	229619833	229619833	C	T	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	silent	c.1560	p.K520	0.104	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	588	0	0	415	116	21.76	-	-	-	T	229619833	C	T	229619833	2	4	316	1	0	0	0	0	0	0	0	1	10827	564	20	4		4	NUP133	1	229619833	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	27864166	229619833	19630788	11	35309										
LRRTM1	0	genome.wustl.edu	37	chr2	80530339	80530340	+	Frame_Shift_Ins	INS	-	-	T													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	acaagccggcgaaagagttgINScgcgccagactcttgagctg							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	80530339	80530340	-	T	INS	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	frame_shift_ins	c.606_605	p.N203fs	1.000:1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	81	0	0	46	57	55.34	-	-	-	T	80530340	-	T	80530339	7	5	316	1	0	1	1	0	0	0	0	0	9105	1306	46	0	966	0	LRRTM1	2	80530339	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09		80530339	162669034	12	35310										
PTCD3	0	genome.wustl.edu	37	chr2	86344259	86344259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	accccaaatattttcagaagGacatagctgaacctcatata	5	10	2	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	86344259	86344259	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	69_37n	1	known	missense	c.391	p.D131N	1.000	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	188	0	0	118	59	33.33	-	-	-	A	86344259	G	A	86344259	3	1	316	1	0	0	0	0	1	0	0	0	12809	1174	41	2	413	2	PTCD3	2	86344259	Missense_Mutation	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	5813920	86344259	156855114	13	35311										
HSPD1	0	genome.wustl.edu	37	chr2	198363534	198363534	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ggagccagtaccctggacacCggtctcatctggcgaaagac	12	13	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	198363534	198363534	C	T	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	silent	c.39	p.P13	0.844	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	49	0	0	39	7	15.22	-	-	-	T	198363534	C	T	198363534	2	4	316	1	0	0	0	0	0	0	0	1	7482	639	23	1		1	HSPD1	2	198363534	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	112019275	198363534	44835839	14	35312										
GPR128	0	genome.wustl.edu	37	chr3	100373700	100373700	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	aaagtcagaaaaacctcagtAacctgggttttggtcaatct	8	8	4	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	3	100373700	100373700	A	C	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	silent	c.1401	p.V467	0.967	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	236	0	0	183	67	26.8	-	-	-	C	100373700	A	C	100373700	2	2	316	1	0	0	0	0	0	0	0	1	6691	349	13	5		5	GPR128	3	100373700	Silent	SNP	A	TCGA-AO-A03R-01A-21W-A050-09		100373700	97648730	15	35313										
MUC4	0	genome.wustl.edu	37	chr3	195510990	195510990	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gtgtcacctgtggatactgaCgaagcgtcggtgacaagaag	14	8	1	3			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	3	195510990	195510990	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.7461	p.S2487	0.007	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	38	0	0	38	10	17.54	-	-	-	T	195510990	C	T	195510990	2	4	316	1	0	0	0	0	0	0	0	1	10050	523	19	1		1	MUC4	3	195510990	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	95137290	195510990	2511440	16	35314										
TTC23L	0	genome.wustl.edu	37	chr5	34867065	34867065	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	aaaggcaattggcgatgttaTtgctgccaagggtgatagga	14	5	0	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	34867065	34867065	T	A	SNP	TTC23L	ENST00000505624	human	ensembl	69_37n	1	known	missense	c.731	p.I244N	0.148	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	187	0	0	115	52	31.14	-	-	-	A	34867065	T	A	34867065	3	1	316	1	0	0	0	0	1	0	0	0	16788	1493	52	5	753	5	TTC23L	5	34867065	Missense_Mutation	SNP	T	TCGA-AO-A03R-01A-21W-A050-09		34867065	146048195	17	35315										
F2R	0	genome.wustl.edu	37	chr5	76028303	76028303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gtcctcttcaaaaacaacttCctgcattcatctcagaagat	4	12	4	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	76028303	76028303	C	A	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	missense	c.253	p.P85T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	177	0	0	100	58	36.71	-	-	-	A	76028303	C	A	76028303	3	1	316	1	0	0	0	0	1	0	0	0	5380	855	30	2	259	2	F2R	5	76028303	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	41161238	76028303	104886957	18	35316										
PCDHGA9	0	genome.wustl.edu	37	chr5	140783298	140783298	+	Frame_Shift_Del	DEL	G	G	-													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gaacgtgcccccaggcacctGgctgcttactgcaacagcca							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	140783298	140783298	G	-	DEL	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	frame_shift_del	c.779	p.W260fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	32	0	0	25	7	21.88	-	-	-	-	140783298	G	-	140783298	7	5	316	1	0	1	0	1	0	0	0	0	11634	1357	47	0	781	0	PCDHGA9	5	140783298	Frame_Shift_Del	DEL	G	TCGA-AO-A03R-01A-21W-A050-09	64754995	140783298	40131962	19	35317										
CD83	0	genome.wustl.edu	37	chr6	14118244	14118244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ctccgaagatgtggacttgcCctgcaccgccccctgggatc	11	16	0	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	6	14118244	14118244	C	T	SNP	CD83	ENST00000379153	human	ensembl	69_37n	1	known	missense	c.101	p.P34L	0.993	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD83	HGNC	ENSG00000112149	85	0	0	43	9	16.98	-	-	-	T	14118244	C	T	14118244	3	4	316	1	0	0	0	0	1	0	0	0	3070	623	22	4	107	4	CD83	6	14118244	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		14118244	156996823	20	35318										
TRERF1	0	genome.wustl.edu	37	chr6	42222647	42222647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ctgacaggcttccgcagtagCagcatttccagagcaacctg	10	13	0	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	6	42222647	42222647	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.2658	p.L886	1.000	pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	46	0	0	63	16	20.25	-	-	-	T	42222647	C	T	42222647	2	4	316	1	0	0	0	0	0	0	0	1	16571	697	25	4		4	TRERF1	6	42222647	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	28104403	42222647	128892420	21	35319										
FAM102A	0	genome.wustl.edu	37	chr9	130716172	130716172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	acacgaaggtgaacctctttCgccaccgcacacagttctcc	7	16	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	9	130716172	130716172	C	A	SNP	FAM102A	ENST00000373095	human	ensembl	69_37n	-1	known	missense	c.179	p.R60L	1.000	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106	63	0	0	31	12	27.91	-	-	-	A	130716172	C	A	130716172	3	1	316	1	0	0	0	0	1	0	0	0	5422	884	31	3	1015	3	FAM102A	9	130716172	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		130716172	10497259	22	35320										
MAP3K8	0	genome.wustl.edu	37	chr10	30747137	30747138	+	Frame_Shift_Ins	INS	-	-	C													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	tgggtgaagcgctaccctcgINSctcagcctatccctcctacc							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	10	30747137	30747138	-	C	INS	MAP3K8	ENST00000263056	human	ensembl	69_37n	1	known	frame_shift_ins	c.998_999	p.S334fs	1.000:0.982	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	80	0	0	45	11	19.64	-	-	-	C	30747138	-	C	30747137	7	5	316	1	0	1	1	0	0	0	0	0	9327	1087	38	0	1016	0	MAP3K8	10	30747137	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09		30747137	104787610	23	35321										
LRP4	0	genome.wustl.edu	37	chr11	46894758	46894758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gcccgttcgatcttggcaatGtggccccagtctgtccagaa	11	13	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	11	46894758	46894758	G	A	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	silent	c.4476	p.H1492	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	124	0	0	97	27	21.77	-	-	-	A	46894758	G	A	46894758	2	1	316	1	0	0	0	0	0	0	0	1	9025	1368	48	4		4	LRP4	11	46894758	Silent	SNP	G	TCGA-AO-A03R-01A-21W-A050-09		46894758	88111758	24	35322										
LRP1	0	genome.wustl.edu	37	chr12	57579378	57579379	+	Frame_Shift_Ins	INS	-	-	A													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gcctgtaccggggccgtgggINScagcgggcctgcgcctgtgc							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	12	57579378	57579379	-	A	INS	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_ins	c.6528_6529	p.Q2176fs	0.882:0.965	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	31	0	0	10	5	33.33	-	-	-	A	57579379	-	A	57579378	7	5	316	1	0	1	1	0	0	0	0	0	9017	1190	42	0	6690	0	LRP1	12	57579378	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09		57579378	76272517	25	35323										
HCFC2	0	genome.wustl.edu	37	chr12	104487163	104487163	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	aatctgttatatttcttgtaGatcaatgatacaataaacag	5	5	3	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	12	104487163	104487163	G	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	splice_site	c.1285-1	e10-1	0.859	-	-	-	no_errors	HCFC2	HGNC	ENSG00000111727	151	0	0	104	16	13.22	-	-	-	A	104487163	G	A	104487163	5	1	316	1	0	0	0	0	0	0	1	0	7044	956	33	2	1322	2	HCFC2	12	104487163	Splice_Site	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	46907785	104487163	29364732	26	35324										
TPTE2	0	genome.wustl.edu	37	chr13	20041461	20041461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	cagtatctaaaatgttaaatAagtcagaaaaatactgctgt	6	5	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	13	20041461	20041461	A	G	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.416	p.L139S	0.000	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	120	0	0	40	20	33.33	-	-	-	G	20041461	A	G	20041461	3	3	316	1	0	0	0	0	1	0	0	0	16527	372	13	5	1208	5	TPTE2	13	20041461	Missense_Mutation	SNP	A	TCGA-AO-A03R-01A-21W-A050-09		20041461	95128417	27	35325										
GPC5	0	genome.wustl.edu	37	chr13	92345580	92345580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gggctgtatttatttggtgcGgatgttaatcctgaagaatt	12	4	0	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	13	92345580	92345580	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	silent	c.465	p.A155	0.055	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	329	0	0	123	72	36.73	-	-	-	A	92345580	G	A	92345580	2	1	316	1	0	0	0	0	0	0	0	1	6651	1103	39	1		1	GPC5	13	92345580	Silent	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	72304119	92345580	22824298	28	35326										
ZFP106	0	genome.wustl.edu	37	chr15	42743536	42743536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	tctatatgtggcaactgtacCaagtttgtcattttcttgcc	7	9	3	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	15	42743536	42743536	C	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.865	p.G289S	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	302	0	0	366	54	12.86	-	-	-	T	42743536	C	T	42743536	3	4	316	1	0	0	0	0	1	0	0	0	17733	594	21	4	4858	4	ZFP106	15	42743536	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		42743536	59787856	29	35327										
BNC1	0	genome.wustl.edu	37	chr15	83926358	83926358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gtagtgggccctaaaggtccCtttgttactgtatgtctttt	10	8	1	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	15	83926358	83926358	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2821	p.G941R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	165	0	0	115	43	27.22	-	-	-	T	83926358	C	T	83926358	3	4	316	1	0	0	0	0	1	0	0	0	1479	681	24	4	167	4	BNC1	15	83926358	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	41182822	83926358	18605034	30	35328										
FLYWCH1	0	genome.wustl.edu	37	chr16	2987149	2987150	+	Frame_Shift_Ins	INS	-	-	G													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gagttcctgaagacgcccctINSggggggcagcttcctggtgt							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	2987149	2987150	-	G	INS	FLYWCH1	ENST00000399667	human	ensembl	69_37n	1	known	frame_shift_ins	c.1688_1689	p.S566fs	0.922:0.924	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	28	0	0	10	2	16.67	-	-	-	G	2987150	-	G	2987149	7	5	316	1	0	1	1	0	0	0	0	0	5993	1580	55	0	1556	0	FLYWCH1	16	2987149	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09		2987149	87367604	31	35329										
ZNF200	0	genome.wustl.edu	37	chr16	3274067	3274067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	aggttttcccacattctggaCacttaaatatcttctccctt	4	12	3	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	3274067	3274067	C	T	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	missense	c.1013	p.C338Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	80	0	0	56	28	33.33	-	-	-	T	3274067	C	T	3274067	3	4	316	1	0	0	0	0	1	0	0	0	17858	478	17	4	178	4	ZNF200	16	3274067	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	286918	3274067	87080686	32	35330										
AARS	0	genome.wustl.edu	37	chr16	70293052	70293052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gggcgaagttcagaatgtgcGtagctgtgtggttgctcatg	16	6	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	70293052	70293052	G	A	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1823	p.T608M	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	162	1	0.61	67	43	39.09	-	-	-	A	70293052	G	A	70293052	3	1	316	1	0	0	0	0	1	0	0	0	19	1145	40	1	1115	1	AARS	16	70293052	Missense_Mutation	SNP	G	TCGA-AO-A03R-01A-21W-A050-09	67018985	70293052	20061701	33	35331										
TCF25	0	genome.wustl.edu	37	chr16	89964995	89964995	+	Frame_Shift_Del	DEL	G	G	-													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ctggccctctacaagcagatGagcttcctggagaagcgagg							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	89964995	89964995	G	-	DEL	TCF25	ENST00000263346	human	ensembl	69_37n	1	known	frame_shift_del	c.1053	p.M351fs	1.000	pfam_TCF25	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	13	0	0	15	15	50	-	-	-	-	89964995	G	-	89964995	7	5	316	1	0	1	0	1	0	0	0	0	15788	1290	45	0	1091	0	TCF25	16	89964995	Frame_Shift_Del	DEL	G	TCGA-AO-A03R-01A-21W-A050-09	19671943	89964995	389758	34	35332										
RABEP1	0	genome.wustl.edu	37	chr17	5238487	5238487	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gatgttttgtagaaacagttCgtgactatgagcaccagttc	10	7	0	3			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	5238487	5238487	C	T	SNP	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	missense	c.376	p.R126C	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	153	0	0	53	39	42.39	-	-	-	T	5238487	C	T	5238487	3	4	316	1	0	0	0	0	1	0	0	0	13044	884	31	1	390	1	RABEP1	17	5238487	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		5238487	75956723	35	35333										
TP53	0	genome.wustl.edu	37	chr17	7577144	7577144	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	cctcaaagctgttccgtcccAgtagattaccactactcagg	7	14	2	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	7577144	7577144	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.794	p.L265R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	234	0	0	104	59	36.2	-	-	-	C	7577144	A	C	7577144	3	2	316	1	0	0	0	0	1	0	0	0	16477	188	7	5	492	5	TP53	17	7577144	Missense_Mutation	SNP	A	TCGA-AO-A03R-01A-21W-A050-09	2338657	7577144	73618066	36	35334										
MRC2	0	genome.wustl.edu	37	chr17	60743534	60743534	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	gacaaccagtggttccacggCtgcaccagcacgggccgcga	13	15	0	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	60743534	60743534	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	silent	c.600	p.G200	0.998	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	45	0	0	18	13	41.94	-	-	-	T	60743534	C	T	60743534	2	4	316	1	0	0	0	0	0	0	0	1	9830	784	28	4		4	MRC2	17	60743534	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	53166390	60743534	20451676	37	35335										
OR10H5	0	genome.wustl.edu	37	chr19	15905356	15905356	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	acctcggccattttccacctCgccttctgtggacacaagga	8	15	1	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	19	15905356	15905356	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	69_37n	1	known	silent	c.498	p.L166	0.342	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H5	HGNC	ENSG00000172519	369	0	0	302	124	28.97	-	-	-	T	15905356	C	T	15905356	2	4	316	1	0	0	0	0	0	0	0	1	10982	871	31	1		1	OR10H5	19	15905356	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		15905356	43223627	38	35336										
RYR1	0	genome.wustl.edu	37	chr19	38946102	38946102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	ccccctcagcttctctaatcCgtggcaatcgtagcaactgt	7	15	2	0			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	19	38946102	38946102	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.1588	p.R530C	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	1048	0	0	691	293	29.66	-	-	-	T	38946102	C	T	38946102	3	4	316	1	0	0	0	0	1	0	0	0	13854	652	23	1	1646	1	RYR1	19	38946102	Missense_Mutation	SNP	C	TCGA-AO-A03R-01A-21W-A050-09	23040746	38946102	20182881	39	35337										
SLC9A8	0	genome.wustl.edu	37	chr20	48431650	48431650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	cctggcaagcccatcctcccCgtgcagacaggggagcaggc	13	16	0	1			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	20	48431650	48431650	C	T	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	silent	c.132	p.P44	0.000	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	148	0	0	78	49	37.98	-	-	-	T	48431650	C	T	48431650	2	4	316	1	0	0	0	0	0	0	0	1	14809	639	23	1		1	SLC9A8	20	48431650	Silent	SNP	C	TCGA-AO-A03R-01A-21W-A050-09		48431650	14593870	40	35338										
FAM9B	0	genome.wustl.edu	37	chrX	8997417	8997417	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	tctgtgatgtattcttcaagGacatttagcaacttcagaga	8	7	4	2			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	X	8997417	8997417	G	A	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	silent	c.324	p.V108	0.001	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	478	1	0.21	262	120	31.41	-	-	-	A	8997417	G	A	8997417	2	1	316	1	0	0	0	0	0	0	0	1	5706	1161	41	2		2	FAM9B	23	8997417	Silent	SNP	G	TCGA-AO-A03R-01A-21W-A050-09		8997417	146273143	41	35339										
KLHL34	0	genome.wustl.edu	37	chrX	21675045	21675046	+	Frame_Shift_Ins	INS	-	-	C													0.0238095238095238	1	1	0.263888888888889	NA	0.263888888888889	1	1	0	accacctcccgtgccctgcgINScccccccaccaacaagatgc							TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	X	21675045	21675046	-	C	INS	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	frame_shift_ins	c.862_861	p.R287fs	0.005:0.005	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	13	0	0	3	2	40	-	-	-	C	21675046	-	C	21675045	7	5	316	1	0	1	1	0	0	0	0	0	8440	1087	38	0	1076	0	KLHL34	23	21675045	Frame_Shift_Ins	INS	-	TCGA-AO-A03R-01A-21W-A050-09	12677628	21675045	133595515	42	35340										
C1orf122	0	genome.wustl.edu	37	chr1	38274673	38274674	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tctcagccaaacctggagcgINScccccccagccggctgtctc							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	38274673	38274674	-	C	INS	C1orf122	ENST00000446260	human	ensembl	69_37n	1	known	frame_shift_ins	c.347_348	p.S119fs	0.772:0.677	NULL	NULL	-	no_errors	C1orf122	HGNC	ENSG00000197982	18	0	0	3	3	50	-	-	-	C	38274674	-	C	38274673	7	5	317	1	0	1	1	0	0	0	0	0	2009	1074	38	0	271	0	C1orf122	1	38274673	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09		38274673	210975948	1	35341										
CACHD1	0	genome.wustl.edu	37	chr1	65129390	65129390	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tctttcagaaagtcccaccaTcatgctgtctgctggcagct	8	13	4	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	65129390	65129390	T	G	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.1964	p.I655S	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	117	0	0	128	20	13.51	-	-	-	G	65129390	T	G	65129390	3	3	317	1	0	0	0	0	1	0	0	0	2562	1435	50	5	1865	5	CACHD1	1	65129390	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09	26854717	65129390	184121231	2	35342										
ATP5F1	0	genome.wustl.edu	37	chr1	111999346	111999346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gtcacaacaggcactggttcAgaagcgccattacctttttg	9	11	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	111999346	111999346	A	G	SNP	ATP5F1	ENST00000369722	human	ensembl	69_37n	1	known	missense	c.482	p.Q161R	1.000	pfam_ATPase_F0-cplx_bsu_mt	pfam_ATPase_F0-cplx_bsu_mt	-	no_errors	ATP5F1	HGNC	ENSG00000116459	102	0	0	43	13	22.81	-	-	-	G	111999346	A	G	111999346	3	3	317	1	0	0	0	0	1	0	0	0	1156	188	7	5	500	5	ATP5F1	1	111999346	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	46869956	111999346	137251275	3	35343										
CASQ2	0	genome.wustl.edu	37	chr1	116280859	116280859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	acttacattctgagtcctcaCtcttgaaaaagccaatgagt	6	10	3	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	116280859	116280859	C	T	SNP	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	missense	c.518	p.S173N	0.968	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	211	0	0	193	33	14.6	-	-	-	T	116280859	C	T	116280859	3	4	317	1	0	0	0	0	1	0	0	0	2706	565	20	4	713	4	CASQ2	1	116280859	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	4281513	116280859	132969762	4	35344										
NOTCH2	0	genome.wustl.edu	37	chr1	120529653	120529653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	caaacccctccattctgacaCctgtggttagggcagtcatc	8	14	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	120529653	120529653	C	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.804	p.R268S	1.000	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	313	0	0	272	61	18.32	-	-	-	A	120529653	C	A	120529653	3	1	317	1	0	0	0	0	1	0	0	0	10620	506	18	4	6731	4	NOTCH2	1	120529653	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	4248794	120529653	128720968	5	35345										
NBPF11	0	genome.wustl.edu	37	chr1	146055394	146055394	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tgcaagcttctcctccttgaActgtcgctcattcctcagca	6	15	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	146055394	146055394	A	G	SNP	NBPF11	ENST00000339388	human	ensembl	69_37n	-1	known	missense	c.229	p.F77L	0.002	NULL	pfam_NBPF_dom,superfamily_Secretoglobin	-	no_errors	NBPF11	HGNC	ENSG00000152042	34	0	0	18	4	18.18	-	-	-	G	146055394	A	G	146055394	3	3	317	1	0	0	0	0	1	0	0	0	10265	58	2	5		5	NBPF11	1	146055394	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	25525741	146055394	103195227	6	35346										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858811	149858811	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	caacgacgaggaactgaacaAgctgctgggcaaagtcacca	11	11	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	149858811	149858811	A	T	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	missense	c.287	p.K96M	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	264	1	0.37	180	53	22.65	-	-	-	T	149858811	A	T	149858811	3	4	317	1	0	0	0	0	1	0	0	0	7229	72	3	5	289	5	HIST2H2AC	1	149858811	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	3803417	149858811	99391810	7	35347										
JTB	0	genome.wustl.edu	37	chr1	153948314	153948314	+	Frame_Shift_Del	DEL	T	T	-													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gcactcaccttttgaactcaTttctcttagatgagctgcat							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	153948314	153948314	T	-	DEL	JTB	ENST00000271843	human	ensembl	69_37n	-1	known	frame_shift_del	c.272	p.N91fs	0.834	pfam_JTB	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543	254	0	0	150	51	25.12	-	-	-	-	153948314	T	-	153948314	7	5	317	1	0	1	0	1	0	0	0	0	8021	1493	52	0	176	0	JTB	1	153948314	Frame_Shift_Del	DEL	T	TCGA-AO-A03T-01A-21W-A050-09	4089503	153948314	95302307	8	35348										
C1orf116	0	genome.wustl.edu	37	chr1	207195327	207195327	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tccttcaacagtcccagcttCttcagggcctcccttctgtg	7	16	4	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	1	207195327	207195327	C	T	SNP	C1orf116	ENST00000359470	human	ensembl	69_37n	-1	known	silent	c.1782	p.K594	1.000	NULL	NULL	-	no_errors	C1orf116	HGNC	ENSG00000182795	175	0	0	96	31	24.41	-	-	-	T	207195327	C	T	207195327	2	4	317	1	0	0	0	0	0	0	0	1	2008	912	32	2		2	C1orf116	1	207195327	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	53247013	207195327	42055294	9	35349										
PREPL	0	genome.wustl.edu	37	chr2	44549012	44549012	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gattgcctccaggctgaataTctagaataatattaggggtc	10	7	1	2			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	44549012	44549012	T	A	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	missense	c.2048	p.D683V	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	159	0	0	72	35	32.71	-	-	-	A	44549012	T	A	44549012	3	1	317	1	0	0	0	0	1	0	0	0	12556	1435	50	5	143	5	PREPL	2	44549012	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09		44549012	198650361	10	35350										
RTN4	0	genome.wustl.edu	37	chr2	55209715	55209715	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gttcctttatcgtgcagttcAcatgaccaagagcagaatta	8	9	1	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	55209715	55209715	A	C	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.3296	p.V1099G	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	91	0	0	52	16	23.53	-	-	-	C	55209715	A	C	55209715	3	2	317	1	0	0	0	0	1	0	0	0	13814	159	6	5	302	5	RTN4	2	55209715	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	10660703	55209715	187989658	11	35351										
PAPOLG	0	genome.wustl.edu	37	chr2	61021858	61021858	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	attttagtttattcgacttgAatcaacatttaaggaccccc	5	9	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	61021858	61021858	A	T	SNP	PAPOLG	ENST00000238714	human	ensembl	69_37n	1	known	missense	c.2003	p.E668V	1.000	NULL	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421	81	0	0	52	9	14.75	-	-	-	T	61021858	A	T	61021858	3	4	317	1	0	0	0	0	1	0	0	0	11504	246	9	5	2081	5	PAPOLG	2	61021858	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	5812143	61021858	182177515	12	35352										
SEPT10	0	genome.wustl.edu	37	chr2	110343411	110343411	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tcaacgaacgaatgttttctCttttctgaaggaaaataaaa	6	6	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	110343411	110343411	C	A	SNP	SEPT10	ENST00000397712	human	ensembl	69_37n	-1	known	missense	c.104	p.R35I	0.222	NULL	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT10	HGNC	ENSG00000186522	189	0	0	152	45	22.84	-	-	-	A	110343411	C	A	110343411	3	1	317	1	0	0	0	0	1	0	0	0	14148	913	32	2	1296	2	SEPT10	2	110343411	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	49321553	110343411	132855962	13	35353										
GLI2	0	genome.wustl.edu	37	chr2	121743981	121743981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cgggagcctgggagacctgaCggcactggatgacacacccc	14	14	0	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	121743981	121743981	C	T	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.2084	p.T695M	0.976	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	86	0	0	41	14	25.45	-	-	-	T	121743981	C	T	121743981	3	4	317	1	0	0	0	0	1	0	0	0	6490	536	19	1	2130	1	GLI2	2	121743981	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	11400570	121743981	121455392	14	35354										
TTN	0	genome.wustl.edu	37	chr2	179471808	179471808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	agggccacagccaaacttgtTcttggcaataacacggaact	9	11	1	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	179471808	179471808	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.45817	p.N15273D	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	324	0	0	254	87	25.51	-	-	-	C	179471808	T	C	179471808	3	2	317	1	0	0	0	0	1	0	0	0	16832	1783	62	5	54512	5	TTN	2	179471808	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09	57727827	179471808	63727565	15	35355										
TTN	0	genome.wustl.edu	37	chr2	179605674	179605674	+	Frame_Shift_Del	DEL	G	G	-													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ttcattggctttagcaatatGctcataagatagttgctggt							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	179605674	179605674	G	-	DEL	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	frame_shift_del	c.11773	p.H3925fs	0.116	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	129	0	0	145	31	17.51	-	-	-	-	179605674	G	-	179605674	7	5	317	1	0	1	0	1	0	0	0	0	16832	1319	46	0	92503	0	TTN	2	179605674	Frame_Shift_Del	DEL	G	TCGA-AO-A03T-01A-21W-A050-09	133866	179605674	63593699	16	35356										
AOX1	0	genome.wustl.edu	37	chr2	201523930	201523930	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tgccaatgtcgaatgtccacCtgcgtggaacaagcacagaa	10	11	0	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	201523930	201523930	C	T	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	silent	c.3214	p.L1072	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	172	0	0	155	23	12.85	-	-	-	T	201523930	C	T	201523930	2	4	317	1	0	0	0	0	0	0	0	1	730	680	24	4		4	AOX1	2	201523930	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	21918256	201523930	41675443	17	35357										
USP37	0	genome.wustl.edu	37	chr2	219410972	219410972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	atcattttccttagggtaatCttcattcaattctgagccag	6	9	5	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	219410972	219410972	C	G	SNP	USP37	ENST00000258399	human	ensembl	69_37n	-1	known	missense	c.652	p.D218H	1.000	NULL	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP37	HGNC	ENSG00000135913	225	0	0	176	42	19.27	-	-	-	G	219410972	C	G	219410972	3	3	317	1	0	0	0	0	1	0	0	0	17165	913	32	2	2363	2	USP37	2	219410972	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	17887042	219410972	23788401	18	35358										
ZNF142	0	genome.wustl.edu	37	chr2	219509198	219509199	+	Frame_Shift_Ins	INS	-	-	G													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tctgctgggctgggactgccINSacccaggtcacccccatggg							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	2	219509198	219509199	-	G	INS	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2041_2040	p.G680fs	0.065:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	45	0	0	23	14	37.84	-	-	-	G	219509199	-	G	219509198	7	5	317	1	0	1	1	0	0	0	0	0	17827	594	21	0	3034	0	ZNF142	2	219509198	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	98226	219509198	23690175	19	35359										
SETD2	0	genome.wustl.edu	37	chr3	47164390	47164390	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gagactgtttgatttcttcaTttaattctgtacaacagaaa	6	6	3	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	3	47164390	47164390	T	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.1736	p.N579S	0.980	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	28	0	0	10	9	47.37	-	-	-	C	47164390	T	C	47164390	3	2	317	1	0	0	0	0	1	0	0	0	14219	1493	52	5	6034	5	SETD2	3	47164390	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09		47164390	150858040	20	35360										
PFKFB4	0	genome.wustl.edu	37	chr3	48573805	48573805	+	Frame_Shift_Del	DEL	G	G	-													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggtcacgtggatgttcatgaGgtaatatacgatgcggctct							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	3	48573805	48573805	G	-	DEL	PFKFB4	ENST00000232375	human	ensembl	69_37n	-1	known	frame_shift_del	c.724	p.L242fs	1.000	pfam_6Phosfructo_kin,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	218	0	0	125	603	81.82	-	-	-	-	48573805	G	-	48573805	7	5	317	1	0	1	0	1	0	0	0	0	11837	1000	35	0	713	0	PFKFB4	3	48573805	Frame_Shift_Del	DEL	G	TCGA-AO-A03T-01A-21W-A050-09	1409415	48573805	149448625	21	35361										
KALRN	0	genome.wustl.edu	37	chr3	124418847	124418847	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggggaatcagccttcccagcGagccctcggagtttgtgcga	14	12	1	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	3	124418847	124418847	G	C	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.7963	p.E2655Q	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	247	1	0.4	152	50	24.75	-	-	-	C	124418847	G	C	124418847	3	2	317	1	0	0	0	0	1	0	0	0	8029	1059	37	3	8341	3	KALRN	3	124418847	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	75845042	124418847	73603583	22	35362										
NKX3-2	0	genome.wustl.edu	37	chr4	13543811	13543811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggcgggcgccgaggccagcaGgtcggctgccatctgccggc	18	15	1	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	13543811	13543811	G	A	SNP	NKX3-2	ENST00000382438	human	ensembl	69_37n	-1	known	silent	c.808	p.L270	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX3-2	HGNC	ENSG00000109705	28	0	0	21	10	32.26	-	-	-	A	13543811	G	A	13543811	2	1	317	1	0	0	0	0	0	0	0	1	10528	991	35	4		4	NKX3-2	4	13543811	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09		13543811	177610465	23	35363										
DHX15	0	genome.wustl.edu	37	chr4	24529618	24529618	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ctgtctctttgcttcacactGtgggaaattgctcatgtcat	8	10	4	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	24529618	24529618	G	A	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	nonsense	c.2317	p.Q773*	1.000	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	247	1	0.4	98	40	28.37	-	-	-	A	24529618	G	A	24529618	4	1	317	1	0	0	0	0	0	1	0	0	4537	1386	48	4	74	4	DHX15	4	24529618	Nonsense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	10985807	24529618	166624658	24	35364										
SLC4A4	0	genome.wustl.edu	37	chr4	72316952	72316953	+	Frame_Shift_Ins	INS	-	-	A													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gttcagatgaatggggatacINSgccccatgatggaggtcacg							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	72316952	72316953	-	A	INS	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	frame_shift_ins	c.1256_1257	p.P420fs	0.996:0.391	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	184	0	0	165	33	16.67	-	-	-	A	72316953	-	A	72316952	7	5	317	1	0	1	1	0	0	0	0	0	14745	536	19	0	1415	0	SLC4A4	4	72316952	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	47787334	72316952	118837324	25	35365	281	2								
SLC4A4	0	genome.wustl.edu	37	chr4	72316953	72316953	+	Silent	SNP	G	G	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gttcagatgaatggggatacGccccatgatggaggtcacgg							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	72316953	72316953	G	C	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	silent	c.1257	p.T419	0.391	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	190	0	0	163	33	16.42	-	-	-	C	72316953	G	C	72316953	2	2	317	1	0	0	0	0	0	0	0	1	14745	1074	38	3		3	SLC4A4	4	72316953	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	1	72316953	118837323	26	35366	281	2								
PITX2	0	genome.wustl.edu	37	chr4	111539646	111539646	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gttgacgttcatagagttgaAgaaggggaagctcttggtgg	16	4	2	4			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	111539646	111539646	A	C	SNP	PITX2	ENST00000306732	human	ensembl	69_37n	-1	known	missense	c.610	p.F204V	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX2	HGNC	ENSG00000164093	158	0	0	108	28	20.44	-	-	-	C	111539646	A	C	111539646	3	2	317	1	0	0	0	0	1	0	0	0	12029	72	3	5	368	5	PITX2	4	111539646	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	39222693	111539646	79614630	27	35367										
TRIML1	0	genome.wustl.edu	37	chr4	189068235	189068235	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gggaatctccccaagccaccTggggacctgttctcactaat	9	14	2	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	4	189068235	189068235	T	A	SNP	TRIML1	ENST00000332517	human	ensembl	69_37n	1	known	silent	c.1116	p.P372	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108	26	0	0	90	20	18.18	-	-	-	A	189068235	T	A	189068235	2	1	317	1	0	0	0	0	0	0	0	1	16646	1567	55	5		5	TRIML1	4	189068235	Silent	SNP	T	TCGA-AO-A03T-01A-21W-A050-09	77528589	189068235	2086041	28	35368										
TARS	0	genome.wustl.edu	37	chr5	33461087	33461087	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tggggtacttcataggaacgAgctgtctggagcactcacag	13	9	3	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	5	33461087	33461087	A	C	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.1331	p.E444A	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	126	0	0	58	20	25.64	-	-	-	C	33461087	A	C	33461087	3	2	317	1	0	0	0	0	1	0	0	0	15651	304	11	5	1377	5	TARS	5	33461087	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09		33461087	147454173	29	35369										
GFPT2	0	genome.wustl.edu	37	chr5	179739534	179739534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tcaccagagagatgaactgaCtggtataagcctgtgcacaa	10	9	1	4			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	5	179739534	179739534	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.1442	p.S481N	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	102	0	0	79	17	17.71	-	-	-	T	179739534	C	T	179739534	3	4	317	1	0	0	0	0	1	0	0	0	6398	565	20	4	626	4	GFPT2	5	179739534	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	146278447	179739534	1175726	30	35370										
DST	0	genome.wustl.edu	37	chr6	56473517	56473517	+	Frame_Shift_Del	DEL	A	A	-													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gaccttcatgagctgctcttAaaatgcttatgtttcttcca							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	6	56473517	56473517	A	-	DEL	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_del	c.5810	p.L1937fs	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	142	0	0	107	33	23.4	-	-	-	-	56473517	A	-	56473517	7	5	317	1	0	1	0	1	0	0	0	0	4818	377	13	0		0	DST	6	56473517	Frame_Shift_Del	DEL	A	TCGA-AO-A03T-01A-21W-A050-09		56473517	114641550	31	35371										
MDN1	0	genome.wustl.edu	37	chr6	90388354	90388354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tttaaagaggtctgacaaagCtcgctgtttttgcatgagaa	10	6	1	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	6	90388354	90388354	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.12376	p.A4126T	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	125	0	0	72	11	13.1	-	-	-	T	90388354	C	T	90388354	3	4	317	1	0	0	0	0	1	0	0	0	9486	797	28	4	4526	4	MDN1	6	90388354	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	33914837	90388354	80726713	32	35372										
ENPP1	0	genome.wustl.edu	37	chr6	132207728	132207728	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	aagagtcatccgtaaccaagAaattttgattccaactcact	5	10	2	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	6	132207728	132207728	A	C	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.2471	p.E824A	0.999	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	177	0	0	45	21	31.82	-	-	-	C	132207728	A	C	132207728	3	2	317	1	0	0	0	0	1	0	0	0	5166	246	9	5	2565	5	ENPP1	6	132207728	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	41819374	132207728	38907339	33	35373										
PMS2	0	genome.wustl.edu	37	chr7	6038878	6038878	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ctgaaatgatacagtatgcaTgtaagacctggaccattttg	9	7	0	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	6038878	6038878	T	G	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.566	p.H189P	0.998	superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	130	0	0	128	28	17.95	-	-	-	G	6038878	T	G	6038878	3	3	317	1	0	0	0	0	1	0	0	0	12217	1464	51	5	2062	5	PMS2	7	6038878	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09		6038878	153099785	34	35374										
URGCP	0	genome.wustl.edu	37	chr7	43917712	43917712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ttgcgggctgcgtgcgccatGtcctccacagatacccgcct	11	16	0	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	43917712	43917712	G	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.1350	p.D450E	0.948	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	94	0	0	52	9	14.75	-	-	-	T	43917712	G	T	43917712	3	4	317	1	0	0	0	0	1	0	0	0	17123	1368	48	4	1449	4	URGCP	7	43917712	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	37878834	43917712	115220951	35	35375										
ABCA13	0	genome.wustl.edu	37	chr7	48545981	48545981	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggggccttgctgaacaaggaCaagatgtgagttgatggaat	15	5	0	4			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	48545981	48545981	C	T	SNP	ABCA13	ENST00000453246	human	ensembl	69_37n	1	known	nonsense	c.2137	p.Q713*	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA13	HGNC	ENSG00000179869	306	1	0.33	286	172	37.47	-	-	-	T	48545981	C	T	48545981	4	4	317	1	0	0	0	0	0	1	0	0	31	477	17	4	13364	4	ABCA13	7	48545981	Nonsense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	4628269	48545981	110592682	36	35376										
CLDN12	0	genome.wustl.edu	37	chr7	90042574	90042574	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ttcccttatactatttatttGgtattgtacatgcaaatctt	4	7	1	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	90042574	90042574	G	C	SNP	CLDN12	ENST00000287916	human	ensembl	69_37n	1	known	missense	c.584	p.W195S	1.000	NULL	prints_Claudin12	-	no_errors	CLDN12	HGNC	ENSG00000157224	109	1	0.91	56	31	35.63	-	-	-	C	90042574	G	C	90042574	3	2	317	1	0	0	0	0	1	0	0	0	3504	1357	47	4	586	4	CLDN12	7	90042574	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	41496593	90042574	69096089	37	35377										
AKAP9	0	genome.wustl.edu	37	chr7	91630767	91630767	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	aactctcaaaaggaaaaactCaaggaagaactaggactaat	7	7	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	91630767	91630767	C	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	silent	c.1572	p.L524	0.974	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	47	0	0	38	12	24	-	-	-	G	91630767	C	G	91630767	2	3	317	1	0	0	0	0	0	0	0	1	459	813	29	2		2	AKAP9	7	91630767	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	1588193	91630767	67507896	38	35378										
CYP3A7	0	genome.wustl.edu	37	chr7	99306819	99306819	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	atagcaactgggaataatctGagtgtttcattcaccaccat	7	9	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	99306819	99306819	G	C	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	silent	c.1092	p.L364	0.995	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	546	0	0	237	62	20.74	-	-	-	C	99306819	G	C	99306819	2	2	317	1	0	0	0	0	0	0	0	1	4212	1277	45	2		2	CYP3A7	7	99306819	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	7676052	99306819	59831844	39	35379										
PVRIG	0	genome.wustl.edu	37	chr7	99818791	99818791	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	acgctcaggcaggggagaggCctcctcacactggtcccggc	14	15	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	99818791	99818791	C	A	SNP	PVRIG	ENST00000317271	human	ensembl	69_37n	1	known	missense	c.898	p.P300T	0.008	NULL	NULL	-	no_errors	PVRIG	HGNC	ENSG00000213413	84	0	0	41	10	19.61	-	-	-	A	99818791	C	A	99818791	3	1	317	1	0	0	0	0	1	0	0	0	12921	739	26	4	916	4	PVRIG	7	99818791	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	511972	99818791	59319872	40	35380										
FBXO24	0	genome.wustl.edu	37	chr7	100189458	100189458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cctcaaaaatgccctggtctCcaccctcggccagatgcagt	8	16	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	100189458	100189458	C	T	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	missense	c.605	p.S202F	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	137	0	0	128	39	23.35	-	-	-	T	100189458	C	T	100189458	3	4	317	1	0	0	0	0	1	0	0	0	5781	855	30	2	662	2	FBXO24	7	100189458	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	370667	100189458	58949205	41	35381										
DLD	0	genome.wustl.edu	37	chr7	107533688	107533688	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tcatggcctacagggactttCtgcagtgcctctgagaactt	10	11	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	107533688	107533688	C	T	SNP	DLD	ENST00000205402	human	ensembl	69_37n	1	known	missense	c.83	p.S28F	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Lipoamide_DH	-	no_errors	DLD	HGNC	ENSG00000091140	184	0	0	117	22	15.83	-	-	-	T	107533688	C	T	107533688	3	4	317	1	0	0	0	0	1	0	0	0	4587	913	32	2	89	2	DLD	7	107533688	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	7344230	107533688	51604975	42	35382										
CALD1	0	genome.wustl.edu	37	chr7	134618765	134618765	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gtagaacagaaaatagaaggGaaatgggtaaatgaaaagaa	12	1	0	5			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	134618765	134618765	G	A	SNP	CALD1	ENST00000361675	human	ensembl	69_37n	1	novel	silent	c.1245	p.G415	0.983	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	816	0	0	810	230	22.09	-	-	-	A	134618765	G	A	134618765	2	1	317	1	0	0	0	0	0	0	0	1	2606	1161	41	2		2	CALD1	7	134618765	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	27085077	134618765	24519898	43	35383										
ZNF777	0	genome.wustl.edu	37	chr7	149152291	149152292	+	Frame_Shift_Ins	INS	-	-	G													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggaacttctccattgctgccINSggggggcagccgcaggatcc							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	149152291	149152292	-	G	INS	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	frame_shift_ins	c.823_822	p.G274fs	0.979:0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	19	0	0	27	4	12.9	-	-	-	G	149152292	-	G	149152291	7	5	317	1	0	1	1	0	0	0	0	0	18243	652	23	0	1692	0	ZNF777	7	149152291	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	14533526	149152291	9986372	44	35384										
KCNH2	0	genome.wustl.edu	37	chr7	150647101	150647101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gggctcctctccatggccccGcttggagggcctgagtttag	14	13	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	7	150647101	150647101	G	T	SNP	KCNH2	ENST00000430723	human	ensembl	69_37n	-1	known	missense	c.2553	p.S851R	0.000	smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	129	0	0	39	12	23.53	-	-	-	T	150647101	G	T	150647101	3	4	317	1	0	0	0	0	1	0	0	0	8086	1078	38	3	1223	3	KCNH2	7	150647101	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	1494810	150647101	8491562	45	35385										
CSMD1	0	genome.wustl.edu	37	chr8	2818711	2818711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ccaaagtgtggcgtaccaggGtctgggcaggtgttatgagc	16	8	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	8	2818711	2818711	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9657	p.D3219E	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	116	0	0	75	14	15.73	-	-	-	T	2818711	G	T	2818711	3	4	317	1	0	0	0	0	1	0	0	0	3976	1252	44	4	1076	4	CSMD1	8	2818711	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09		2818711	143545311	46	35386										
VPS37A	0	genome.wustl.edu	37	chr8	17137583	17137583	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	aacaagaggaggtattactaGaacagtttctgactttgcct	9	7	1	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	8	17137583	17137583	G	T	SNP	VPS37A	ENST00000324849	human	ensembl	69_37n	1	known	nonsense	c.760	p.E254*	1.000	pfam_Mod_r	pfam_Mod_r,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	VPS37A	HGNC	ENSG00000155975	84	0	0	45	13	22.03	-	-	-	T	17137583	G	T	17137583	4	4	317	1	0	0	0	0	0	1	0	0	17302	943	33	2	786	2	VPS37A	8	17137583	Nonsense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	14318872	17137583	129226439	47	35387										
EYA1	0	genome.wustl.edu	37	chr8	72211888	72211888	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	attacctgctgtgaactattAaatccagaggaatttgtgag	9	6	0	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	8	72211888	72211888	A	G	SNP	EYA1	ENST00000465115	human	ensembl	69_37n	-1	known	missense	c.542	p.L181S	1.000	NULL	NULL	-	no_errors	EYA1	HGNC	ENSG00000104313	235	0	0	137	35	20.35	-	-	-	G	72211888	A	G	72211888	3	3	317	1	0	0	0	0	1	0	0	0	5365	359	13	5	1198	5	EYA1	8	72211888	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	55074305	72211888	74152134	48	35388										
C9orf123	0	genome.wustl.edu	37	chr9	7799564	7799564	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tacccgcccgcccccatcagCcccaacccagaaagcacgcg	7	22	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	9	7799564	7799564	C	A	SNP	C9orf123	ENST00000358227	human	ensembl	69_37n	-1	known	silent	c.171	p.G57	0.927	NULL	NULL	-	no_errors	C9orf123	HGNC	ENSG00000137038	59	0	0	32	7	17.95	-	-	-	A	7799564	C	A	7799564	2	1	317	1	0	0	0	0	0	0	0	1	2478	726	26	4		4	C9orf123	9	7799564	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09		7799564	133413867	49	35389										
CNTLN	0	genome.wustl.edu	37	chr9	17235755	17235755	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggaaagaattcagtgacttgGagaagaaatttaaagataaa	10	2	1	5			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	9	17235755	17235755	G	C	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.634	p.E212Q	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	320	0	0	140	57	28.93	-	-	-	C	17235755	G	C	17235755	3	2	317	1	0	0	0	0	1	0	0	0	3669	1175	41	2	648	2	CNTLN	9	17235755	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	9436191	17235755	123977676	50	35390										
VPS13A	0	genome.wustl.edu	37	chr9	80020881	80020881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gccattcattgttcatgggaGaagattgcgcattgaagcaa	11	7	2	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	9	80020881	80020881	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.9377	p.R3126K	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	365	0	0	229	76	24.92	-	-	-	A	80020881	G	A	80020881	3	1	317	1	0	0	0	0	1	0	0	0	17286	942	33	2	9783	2	VPS13A	9	80020881	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	62785126	80020881	61192550	51	35391										
ZNF438	0	genome.wustl.edu	37	chr10	31134261	31134261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cttctccggcttccctctctCaggatgccttttccagtcgg	8	16	3	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	10	31134261	31134261	C	G	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.2116	p.E706Q	0.970	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	83	0	0	34	10	22.73	-	-	-	G	31134261	C	G	31134261	3	3	317	1	0	0	0	0	1	0	0	0	18006	835	29	2	374	2	ZNF438	10	31134261	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09		31134261	104400486	52	35392										
ZNF485	0	genome.wustl.edu	37	chr10	44111988	44111988	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	atgtaaagaatgtgggatcgCctttatgaacagttcatccc	9	8	1	2			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	10	44111988	44111988	C	A	SNP	ZNF485	ENST00000361807	human	ensembl	69_37n	1	known	missense	c.497	p.A166D	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	123	0	0	76	34	30.91	-	-	-	A	44111988	C	A	44111988	3	1	317	1	0	0	0	0	1	0	0	0	18034	739	26	4	511	4	ZNF485	10	44111988	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	12977727	44111988	91422759	53	35393										
CREB3L1	0	genome.wustl.edu	37	chr11	46332608	46332609	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tggtgcagatgcctccgacgINSccccccagcagccatggcag							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	11	46332608	46332609	-	C	INS	CREB3L1	ENST00000288400	human	ensembl	69_37n	1	known	frame_shift_ins	c.621_622	p.S209fs	0.542:1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB3L1	HGNC	ENSG00000157613	29	0	0	27	3	10	-	-	-	C	46332609	-	C	46332608	7	5	317	1	0	1	1	0	0	0	0	0	3886	1074	38	0	639	0	CREB3L1	11	46332608	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09		46332608	88673908	54	35394										
TECTA	0	genome.wustl.edu	37	chr11	121060518	121060518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	agggtgtgagcagatttgcaCgagccgggtggatgggcctc	18	8	0	2			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	11	121060518	121060518	C	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.6296	p.T2099K	1.000	smart_EGF-like	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	479	0	0	239	27	10.15	-	-	-	A	121060518	C	A	121060518	3	1	317	1	0	0	0	0	1	0	0	0	15842	536	19	3	6382	3	TECTA	11	121060518	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	74727910	121060518	13945998	55	35395										
OR6T1	0	genome.wustl.edu	37	chr11	123814154	123814154	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cattcatcagggtctcatagCggagtggtcggcagattgcc	13	10	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	11	123814154	123814154	C	A	SNP	OR6T1	ENST00000321252	human	ensembl	69_37n	-1	known	missense	c.392	p.R131L	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	104	0	0	47	29	38.16	-	-	-	A	123814154	C	A	123814154	3	1	317	1	0	0	0	0	1	0	0	0	11283	768	27	3	582	3	OR6T1	11	123814154	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	2753636	123814154	11192362	56	35396										
LRP6	0	genome.wustl.edu	37	chr12	12397385	12397385	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	atccagaaacaacaacattcTgcacactctcagttttgtta	4	11	2	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	12	12397385	12397385	T	A	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.260	p.Q87L	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	327	0	0	133	45	25.28	-	-	-	A	12397385	T	A	12397385	3	1	317	1	0	0	0	0	1	0	0	0	9028	1580	55	5	4669	5	LRP6	12	12397385	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09		12397385	121454510	57	35397										
GCN1L1	0	genome.wustl.edu	37	chr12	120591094	120591094	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggggtcactcttgtccaggtGcttggccagagagcccatca	13	12	3	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	12	120591094	120591094	G	C	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.3985	p.H1329D	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	74	0	0	40	11	21.57	-	-	-	C	120591094	G	C	120591094	3	2	317	1	0	0	0	0	1	0	0	0	6349	1319	46	4	4134	4	GCN1L1	12	120591094	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	108193709	120591094	13260801	58	35398										
FAM123A	0	genome.wustl.edu	37	chr13	25744436	25744437	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ctcggtctgggagagcatgtINScccagaactcctgtagatag							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	13	25744436	25744437	-	C	INS	FAM123A	ENST00000515384	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1322_1321	p.D441fs	1.000:1.000	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123A	HGNC	ENSG00000165566	46	0	0	31	10	24.39	-	-	-	C	25744437	-	C	25744436	7	5	317	1	0	1	1	0	0	0	0	0	5462	1667	58	0	697	0	FAM123A	13	25744436	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09		25744436	89425442	59	35399										
ERCC5	0	genome.wustl.edu	37	chr13	103514800	103514800	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cagtgatgaaggacttaaagTgagagatggaaaaggaatac	13	3	0	4			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	13	103514800	103514800	T	C	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	missense	c.1301	p.V434A	0.000	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	191	0	0	153	42	21.54	-	-	-	C	103514800	T	C	103514800	3	2	317	1	0	0	0	0	1	0	0	0	5253	1696	59	5	1331	5	ERCC5	13	103514800	Missense_Mutation	SNP	T	TCGA-AO-A03T-01A-21W-A050-09	77770364	103514800	11655078	60	35400										
RAB20	0	genome.wustl.edu	37	chr13	111176499	111176500	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggtgaggatgatggcggccgINSccccccggcagtacatggag							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	13	111176499	111176500	-	C	INS	RAB20	ENST00000267328	human	ensembl	69_37n	-1	known	frame_shift_ins	c.218_217	p.A73fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB20	HGNC	ENSG00000139832	34	0	0	18	3	14.29	-	-	-	C	111176500	-	C	111176499	7	5	317	1	0	1	1	0	0	0	0	0	12990	1087	38	0	490	0	RAB20	13	111176499	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	7661699	111176499	3993379	61	35401										
YLPM1	0	genome.wustl.edu	37	chr14	75247126	75247126	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	agtctgaggacccagaagaaGatgccaggttaaagcagttg	13	7	1	4			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	14	75247126	75247126	G	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.1129	p.D377H	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	300	0	0	142	33	18.86	-	-	-	C	75247126	G	C	75247126	3	2	317	1	0	0	0	0	1	0	0	0	17583	942	33	2	1139	2	YLPM1	14	75247126	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09		75247126	32102414	62	35402										
SHC4	0	genome.wustl.edu	37	chr15	49148280	49148282	+	In_Frame_Del	DEL	TCT	TCT	-													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tttcattgtaatattcatgaTcttctctctcctcggcatgg							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	15	49148280	49148282	TCT	-	DEL	SHC4	ENST00000332408	human	ensembl	69_37n	-1	known	in_frame_del	c.1112_1110	p.E370in_frame_del	0.999:1.000:1.000	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	209	0	0	176	21	10.61	-	-	-	-	49148282	TCT	-	49148280	7	5	317	1	0	1	0	1	0	0	0	0	14362	1435	50	0	800	0	SHC4	15	49148280	In_Frame_Del	DEL	TCT	TCGA-AO-A03T-01A-21W-A050-09		49148280	53383112	63	35403										
KLHL25	0	genome.wustl.edu	37	chr15	86311929	86311929	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cgggcaatcagcatgggcgcCgccttggaccattcctcatg	12	14	2	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	15	86311929	86311929	C	T	SNP	KLHL25	ENST00000337975	human	ensembl	69_37n	-1	known	silent	c.1113	p.A371	0.386	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655	38	0	0	32	5	13.51	-	-	-	T	86311929	C	T	86311929	2	4	317	1	0	0	0	0	0	0	0	1	8433	639	23	1		1	KLHL25	15	86311929	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	37163649	86311929	16219463	64	35404										
MCTP2	0	genome.wustl.edu	37	chr15	94910918	94910918	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	agctgtctgggggctctcctTatgttggtcacacttacacc	10	12	3	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	15	94910918	94910918	T	A	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	silent	c.1386	p.L462	0.004	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	69	0	0	102	13	11.3	-	-	-	A	94910918	T	A	94910918	2	1	317	1	0	0	0	0	0	0	0	1	9472	1741	61	5		5	MCTP2	15	94910918	Silent	SNP	T	TCGA-AO-A03T-01A-21W-A050-09	8598989	94910918	7620474	65	35405										
SRCAP	0	genome.wustl.edu	37	chr16	30722922	30722922	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	catggaggagctattgcagcAgtatgcaggagcctatgccc	13	10	0	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	16	30722922	30722922	A	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.1349	p.Q450L	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	248	0	0	294	43	12.72	-	-	-	T	30722922	A	T	30722922	3	4	317	1	0	0	0	0	1	0	0	0	15226	188	7	5	1383	5	SRCAP	16	30722922	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09		30722922	59631831	66	35406										
ZNF646	0	genome.wustl.edu	37	chr16	31087657	31087658	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gttgccccatggaggacacaINScccccctcactcagctgctc							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	16	31087657	31087658	-	C	INS	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	frame_shift_ins	c.12_13	p.S6fs	0.000:0.235	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	31	0	0	23	3	11.54	-	-	-	C	31087658	-	C	31087657	7	5	317	1	0	1	1	0	0	0	0	0	18158	146	6	0	14	0	ZNF646	16	31087657	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	364735	31087657	59267096	67	35407										
TRIM72	0	genome.wustl.edu	37	chr16	31230728	31230728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gcgtgtacggggtgaggcagGggtcgccttgcgccgggagc	21	10	0	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	16	31230728	31230728	G	A	SNP	TRIM72	ENST00000322122	human	ensembl	69_37n	1	known	missense	c.605	p.G202E	0.241	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM72	HGNC	ENSG00000177238	32	0	0	59	26	30.59	-	-	-	A	31230728	G	A	31230728	3	1	317	1	0	0	0	0	1	0	0	0	16641	1232	43	4	615	4	TRIM72	16	31230728	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	143071	31230728	59124025	68	35408										
MLYCD	0	genome.wustl.edu	37	chr16	83940597	83940597	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tcttctccttttcaggaaatGaatggggtgctgaaaggaat	11	6	3	2			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	16	83940597	83940597	G	A	SNP	MLYCD	ENST00000262430	human	ensembl	69_37n	1	known	missense	c.534	p.M178I	1.000	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150	115	0	0	152	26	14.53	-	-	-	A	83940597	G	A	83940597	3	1	317	1	0	0	0	0	1	0	0	0	9709	1290	45	2	540	2	MLYCD	16	83940597	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	52709869	83940597	6414156	69	35409										
MAP2K4	0	genome.wustl.edu	37	chr17	12011108	12011109	+	Frame_Shift_Ins	INS	-	-	T													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	atatttgttattttatagggINStgactgttggatctgtatgg							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	17	12011108	12011109	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_ins	c.548_549	p.D184fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	233	0	0	135	56	29.32	-	-	-	T	12011109	-	T	12011108	7	5	317	1	0	1	1	0	0	0	0	0	9310	1275	44	0	533	0	MAP2K4	17	12011108	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09		12011108	69184102	70	35410										
SUPT6H	0	genome.wustl.edu	37	chr17	27001581	27001581	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ttgatgaccgcctggaggatGatgattttgacctcattgag	12	7	1	6			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	17	27001581	27001581	G	A	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.295	p.D99N	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	357	0	0	312	107	25.54	-	-	-	A	27001581	G	A	27001581	3	1	317	1	0	0	0	0	1	0	0	0	15491	1290	45	2	305	2	SUPT6H	17	27001581	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	14990473	27001581	54193629	71	35411										
KRT23	0	genome.wustl.edu	37	chr17	39092736	39092737	+	Frame_Shift_Ins	INS	-	-	C													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	aggacagggagatgcgggctINSccccccgcaccgccatggac							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	17	39092736	39092737	-	C	INS	KRT23	ENST00000209718	human	ensembl	69_37n	-1	known	frame_shift_ins	c.120_119	p.A41fs	0.000:0.968	NULL	pfam_F,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244	38	0	0	24	3	11.11	-	-	-	C	39092737	-	C	39092736	7	5	317	1	0	1	1	0	0	0	0	0	8513	1538	54	0	1180	0	KRT23	17	39092736	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	12091155	39092736	42102474	72	35412										
MYCBPAP	0	genome.wustl.edu	37	chr17	48595031	48595031	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gagtctccaggattttaagaGaattgcacttgctcgaggga	12	7	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	17	48595031	48595031	G	C	SNP	MYCBPAP	ENST00000323776	human	ensembl	69_37n	1	known	missense	c.569	p.R190T	1.000	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	37	0	0	28	9	24.32	-	-	-	C	48595031	G	C	48595031	3	2	317	1	0	0	0	0	1	0	0	0	10091	942	33	2	583	2	MYCBPAP	17	48595031	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	9502295	48595031	32600179	73	35413										
ABCA10	0	genome.wustl.edu	37	chr17	67212118	67212118	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ataggtttccttattaaaacActcatgaggaaagccaatgc	7	8	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	17	67212118	67212118	A	T	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.696	p.S232R	0.008	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	61	0	0	63	15	19.23	-	-	-	T	67212118	A	T	67212118	3	4	317	1	0	0	0	0	1	0	0	0	29	156	6	5	4063	5	ABCA10	17	67212118	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09	18617087	67212118	13983092	74	35414										
MBD1	0	genome.wustl.edu	37	chr18	47800615	47800615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gcgcttctggttgctgccccCgaatttgggcttgtcgcagc	13	13	1	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	18	47800615	47800615	C	T	SNP	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	missense	c.1240	p.G414R	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	53	0	0	24	6	20	-	-	-	T	47800615	C	T	47800615	3	4	317	1	0	0	0	0	1	0	0	0	9413	652	23	1	948	1	MBD1	18	47800615	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09		47800615	30276633	75	35415										
MUC16	0	genome.wustl.edu	37	chr19	9056288	9056288	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gaagatgtcctgcctggttgGcttgaagtgtccaaagtact	12	8	0	2			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	9056288	9056288	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.31158	p.S10386R	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	112	0	0	102	34	24.82	-	-	-	C	9056288	G	C	9056288	3	2	317	1	0	0	0	0	1	0	0	0	10045	1194	42	4	12693	4	MUC16	19	9056288	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09		9056288	50072695	76	35416										
COMP	0	genome.wustl.edu	37	chr19	18902064	18902064	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gtgagcagaagaacgcaggcGgtgtcggggaccatggcggt	19	8	0	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	18902064	18902064	G	C	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	silent	c.15	p.T5	0.938	NULL	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	60	0	0	43	10	18.87	-	-	-	C	18902064	G	C	18902064	2	2	317	1	0	0	0	0	0	0	0	1	3754	1103	39	3		3	COMP	19	18902064	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	9845776	18902064	40226919	77	35417										
LMTK3	0	genome.wustl.edu	37	chr19	49004805	49004805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cagaggtcagcaggcagttgCgcagggccaggtcgctgcgg	18	11	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	49004805	49004805	C	T	SNP	LMTK3	ENST00000270238	human	ensembl	69_37n	-1	known	missense	c.896	p.R299H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	119	0	0	81	30	27.03	-	-	-	T	49004805	C	T	49004805	3	4	317	1	0	0	0	0	1	0	0	0	8916	768	27	1	3605	1	LMTK3	19	49004805	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	30102741	49004805	10124178	78	35418										
KCNC3	0	genome.wustl.edu	37	chr19	50826555	50826556	+	Frame_Shift_Ins	INS	-	-	G													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cttcttgggcagcttctgctINStggccatggccagcgaatag							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	50826555	50826556	-	G	INS	KCNC3	ENST00000477616	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1655_1654	p.K552fs	1.000:1.000	prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	43	0	0	31	4	11.43	-	-	-	G	50826556	-	G	50826555	7	5	317	1	0	1	1	0	0	0	0	0	8070	1609	56	0	630	0	KCNC3	19	50826555	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	1821750	50826555	8302428	79	35419	282	2								
KCNC3	0	genome.wustl.edu	37	chr19	50826558	50826559	+	Frame_Shift_Ins	INS	-	-	GA													0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	cttgggcagcttctgcttggINSccatggccagcgaatagtac							TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	50826558	50826559	-	GA	INS	KCNC3	ENST00000477616	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1652_1651	p.A551fs	1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	45	0	0	34	4	10.53	-	-	-	GA	50826559	-	GA	50826558	7	5	317	1	0	1	1	0	0	0	0	0	8070	1203	42	0	633	0	KCNC3	19	50826558	Frame_Shift_Ins	INS	-	TCGA-AO-A03T-01A-21W-A050-09	3	50826558	8302425	80	35420	282	2								
HAS1	0	genome.wustl.edu	37	chr19	52217239	52217239	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	acgcatggtgccggtgccacCagagcgcgttgtacagccac	13	14	0	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	19	52217239	52217239	C	G	SNP	HAS1	ENST00000222115	human	ensembl	69_37n	-1	known	missense	c.1178	p.W393S	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509	176	0	0	103	36	25.71	-	-	-	G	52217239	C	G	52217239	3	3	317	1	0	0	0	0	1	0	0	0	7012	595	21	4	562	4	HAS1	19	52217239	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	1390681	52217239	6911744	81	35421										
C20orf26	0	genome.wustl.edu	37	chr20	20054946	20054946	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	tgttctctcttcttctgcagCccctgaatacgttgttcatg	7	12	5	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	20	20054946	20054946	C	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.295	p.P99T	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	242	0	0	150	127	45.85	-	-	-	A	20054946	C	A	20054946	3	1	317	1	0	0	0	0	1	0	0	0	2126	753	26	4	305	4	C20orf26	20	20054946	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09		20054946	42970574	82	35422										
CDH26	0	genome.wustl.edu	37	chr20	58564054	58564054	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gagagaggaaagcttcagccGccaaggaaggcagcagccag	15	10	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	20	58564054	58564054	G	T	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.1119	p.P373	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	145	0	0	146	29	16.38	-	-	-	T	58564054	G	T	58564054	2	4	317	1	0	0	0	0	0	0	0	1	3139	1074	38	3		3	CDH26	20	58564054	Silent	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	38509108	58564054	4461466	83	35423										
GAL3ST1	0	genome.wustl.edu	37	chr22	30951010	30951010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggttggcgccgaggtccatcAggtactggatctcgggcgtg	17	10	2	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	22	30951010	30951010	A	G	SNP	GAL3ST1	ENST00000338911	human	ensembl	69_37n	-1	known	missense	c.1202	p.L401P	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242	29	0	0	25	8	24.24	-	-	-	G	30951010	A	G	30951010	3	3	317	1	0	0	0	0	1	0	0	0	6247	188	7	5	73	5	GAL3ST1	22	30951010	Missense_Mutation	SNP	A	TCGA-AO-A03T-01A-21W-A050-09		30951010	20353556	84	35424										
ATRX	0	genome.wustl.edu	37	chrX	76937079	76937079	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	gtcacaggcttaattttctgTtcatcgctgcttccctcacc	6	14	4	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	X	76937079	76937079	T	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	silent	c.3669	p.E1223	0.992	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	210	0	0	125	38	23.31	-	-	-	C	76937079	T	C	76937079	2	2	317	1	0	0	0	0	0	0	0	1	1212	1722	60	5		5	ATRX	23	76937079	Silent	SNP	T	TCGA-AO-A03T-01A-21W-A050-09		76937079	78333481	85	35425										
GPR112	0	genome.wustl.edu	37	chrX	135428727	135428727	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	ggaatttcagctggatctccCacttctgggagcacacatat	9	11	3	0			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	X	135428727	135428727	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.2862	p.P954	0.004	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	262	0	0	260	66	20.25	-	-	-	T	135428727	C	T	135428727	2	4	317	1	0	0	0	0	0	0	0	1	6679	581	21	4		4	GPR112	23	135428727	Silent	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	58491648	135428727	19841833	86	35426										
FLNA	0	genome.wustl.edu	37	chrX	153593247	153593247	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	aagtctgctgacttgccaacGacgccgccctccagcccagg	10	17	1	1			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	X	153593247	153593247	G	T	SNP	FLNA	ENST00000420627	human	ensembl	69_37n	-1	known	missense	c.1726	p.R576S	0.754	NULL	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_start_codon	FLNA	HGNC	ENSG00000196924	25	0	0	38	10	20.83	-	-	-	T	153593247	G	T	153593247	3	4	317	1	0	0	0	0	1	0	0	0	5979	1045	37	3	6321	3	FLNA	23	153593247	Missense_Mutation	SNP	G	TCGA-AO-A03T-01A-21W-A050-09	18164520	153593247	1677313	87	35427										
CLIC2	0	genome.wustl.edu	37	chrX	154528458	154528458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127906976744186	11	0.0553619813795328	2.07144716293597	2.95507147719537	1.5244416350611	1	1	0	actctctccatcacttccagCctattaagataaagagagac	5	12	2	3			TCGA-AO-A03T-01A-21W-A050-09	TCGA-AO-A03T-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbea866d-da66-4f7c-994b-c1ec35aa2d4b	467c3965-5537-4c89-a3f0-ba3eca9854b4	X	154528458	154528458	C	T	SNP	CLIC2	ENST00000369449	human	ensembl	69_37n	-1	known	missense	c.58	p.A20T	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC2	HGNC	ENSG00000155962	299	0	0	280	32	10.26	-	-	-	T	154528458	C	T	154528458	3	4	317	1	0	0	0	0	1	0	0	0	3556	753	26	4	705	4	CLIC2	23	154528458	Missense_Mutation	SNP	C	TCGA-AO-A03T-01A-21W-A050-09	935211	154528458	742102	88	35428										
C2orf16	0	genome.wustl.edu	37	chr2	27803312	27803312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	gattcaaaatatccaatgaaGagaatcaccaagcgacttag	7	8	2	2			TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	2	27803312	27803312	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.3873	p.K1291N	0.063	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	108	0	0	57	16	21.92	-	-	-	C	27803312	G	C	27803312	3	2	318	1	0	0	0	0	1	0	0	0	2177	933	33	2	3875	2	C2orf16	2	27803312	Missense_Mutation	SNP	G	TCGA-AO-A03U-01B-21D-A10M-09		27803312	215396061	1	35429										
CCDC74B	0	genome.wustl.edu	37	chr2	130897620	130897620	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	gaaagctagcttcctccgggActgcctggggcctctggctc	13	14	1	0			TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	2	130897620	130897620	A	G	SNP	CCDC74B	ENST00000392984	human	ensembl	69_37n	-1	known	missense	c.1232	p.V411A	0.003	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	12	0	0	48	21	30.43	-	-	-	G	130897620	A	G	130897620	3	3	318	1	0	0	0	0	1	0	0	0	2875	275	10	5	228	5	CCDC74B	2	130897620	Missense_Mutation	SNP	A	TCGA-AO-A03U-01B-21D-A10M-09	103094308	130897620	112301753	2	35430										
GPR98	0	genome.wustl.edu	37	chr5	89990148	89990149	+	Frame_Shift_Del	DEL	TA	TA	-													0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	ttcgcaaatctcacagtgtcTattcttcctgatgatttccc							TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	5	89990148	89990149	TA	-	DEL	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	frame_shift_del	c.7575_7576	p.I2526fs	0.154:0.184	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	179	0	0	153	36	19.05	-	-	-	-	89990149	TA	-	89990148	7	5	318	1	0	1	0	1	0	0	0	0	6772	1509	53	0	7705	0	GPR98	5	89990148	Frame_Shift_Del	DEL	TA	TCGA-AO-A03U-01B-21D-A10M-09		89990148	90925112	3	35431										
TG	0	genome.wustl.edu	37	chr8	133899093	133899093	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	tctggagcccttggcacaagAggcacatttaacttcagtca	9	11	3	1			TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	8	133899093	133899093	A	G	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	silent	c.1476	p.R492	0.361	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	48	0	0	59	14	19.18	-	-	-	G	133899093	A	G	133899093	2	3	318	1	0	0	0	0	0	0	0	1	15908	301	11	5		5	TG	8	133899093	Silent	SNP	A	TCGA-AO-A03U-01B-21D-A10M-09		133899093	12464929	4	35432										
RPS27L	0	genome.wustl.edu	37	chr15	63448632	63448633	+	In_Frame_Ins	INS	-	-	TAC													0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	tggacattttacatccataaINSagtaagaatttggactttgt							TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	15	63448632	63448633	-	TAC	INS	RPS27L	ENST00000330964	human	ensembl	69_37n	-1	known	in_frame_ins	c.95_94	p.F32in_frame_insCI	1.000:1.000	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom	-	no_errors	RPS27L	HGNC	ENSG00000185088	861	0	0	172	23	11.79	-	-	-	TAC	63448633	-	TAC	63448632	7	5	318	1	0	1	1	0	0	0	0	0	13726	14	1	0	171	0	RPS27L	15	63448632	In_Frame_Ins	INS	-	TCGA-AO-A03U-01B-21D-A10M-09		63448632	39082760	5	35433										
AP3D1	0	genome.wustl.edu	37	chr19	2114127	2114127	+	Frame_Shift_Del	DEL	C	C	-													0.166666666666667	1	0.417306707629289	6.88888888888889	6.88888888888889	NA	1	1	0	ctgggcactagccttaccttCttctccttctccttcttctt							TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	19	2114127	2114127	C	-	DEL	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	frame_shift_del	c.2598	p.K867fs	0.158	pfam_BLV_receptor,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	163	0	0	124	15	10.71	-	-	-	-	2114127	C	-	2114127	7	5	318	1	0	1	0	1	0	0	0	0	747	912	32	0	1057	0	AP3D1	19	2114127	Frame_Shift_Del	DEL	C	TCGA-AO-A03U-01B-21D-A10M-09		2114127	57014856	6	35434										
AURKAIP1	0	genome.wustl.edu	37	chr1	1309283	1309283	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	aggtctttctcgaacttgatCtgcaagacgcagagagaggg	13	8	3	4			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	1309283	1309283	C	T	SNP	AURKAIP1	ENST00000321751	human	ensembl	69_37n	-1	known	splice_site	c.499-1	e3-1	0.996	-	-	-	no_errors	AURKAIP1	HGNC	ENSG00000175756	36	0	0	29	10	25.64	-	-	-	T	1309283	C	T	1309283	5	4	319	1	0	0	0	0	0	0	1	0	1226	927	32	2	105	2	AURKAIP1	1	1309283	Splice_Site	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		1309283	247941338	1	35435										
FBXO2	0	genome.wustl.edu	37	chr1	11708857	11708857	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	agcggacgaagcggacgcccGgcccgtagtcggtgaaggtg	18	11	0	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	11708857	11708857	G	C	SNP	FBXO2	ENST00000354287	human	ensembl	69_37n	-1	known	missense	c.785	p.P262R	0.998	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661	29	0	0	14	6	30	-	-	-	C	11708857	G	C	11708857	3	2	319	1	0	0	0	0	1	0	0	0	5778	1116	39	3	109	3	FBXO2	1	11708857	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	10399574	11708857	237541764	2	35436										
HIVEP3	0	genome.wustl.edu	37	chr1	42047320	42047320	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	attctggaggcctgctcagaGaggcctgtctcaccaagaag	12	11	3	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	42047320	42047320	G	A	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.3149	p.S1050F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	69	0	0	33	25	43.1	-	-	-	A	42047320	G	A	42047320	3	1	319	1	0	0	0	0	1	0	0	0	7239	942	33	2	4095	2	HIVEP3	1	42047320	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	30338463	42047320	207203301	3	35437										
TGFBR3	0	genome.wustl.edu	37	chr1	92161237	92161237	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	agtcacactaacctgtgtgaGaatagatgtaccacaaggcc	9	10	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	92161237	92161237	G	T	SNP	TGFBR3	ENST00000212355	human	ensembl	69_37n	-1	known	missense	c.2429	p.S810Y	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TGFBR3	HGNC	ENSG00000069702	77	0	0	39	25	39.06	-	-	-	T	92161237	G	T	92161237	3	4	319	1	0	0	0	0	1	0	0	0	15918	942	33	2	134	2	TGFBR3	1	92161237	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	50113917	92161237	157089384	4	35438										
TARS2	0	genome.wustl.edu	37	chr1	150476814	150476814	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ccatctgtttcctgtagattGacgtgcacctccacgatgcc	8	14	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	150476814	150476814	G	C	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.1621	p.D541H	1.000	pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	61	0	0	15	18	54.55	-	-	-	C	150476814	G	C	150476814	3	2	319	1	0	0	0	0	1	0	0	0	15652	1290	45	2	1675	2	TARS2	1	150476814	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	58315577	150476814	98773807	5	35439										
HEATR1	0	genome.wustl.edu	37	chr1	236738059	236738059	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	atctagactcttcggatcctCatttaaaagggaaactgaaa	7	8	3	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	1	236738059	236738059	C	A	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	nonsense	c.3229	p.E1077*	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	150	0	0	89	38	29.92	-	-	-	A	236738059	C	A	236738059	4	1	319	1	0	0	0	0	0	1	0	0	7078	835	29	2	3297	2	HEATR1	1	236738059	Nonsense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	86261245	236738059	12512562	6	35440										
PUM2	0	genome.wustl.edu	37	chr2	20455818	20455818	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	cccttgaaagcatcaatgatGaactgtagtgactgtggctg	11	8	1	4			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	2	20455818	20455818	G	A	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	silent	c.2604	p.F868	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	269	0	0	165	71	30.08	-	-	-	A	20455818	G	A	20455818	2	1	319	1	0	0	0	0	0	0	0	1	12909	1281	45	2		2	PUM2	2	20455818	Silent	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09		20455818	222743555	7	35441										
KDM3A	0	genome.wustl.edu	37	chr2	86707459	86707459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctggctggccgacctaaccaGcgggaatgtcaacaaggaaa	12	11	1	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	2	86707459	86707459	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.2486	p.S829N	0.916	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	113	0	0	93	44	32.12	-	-	-	A	86707459	G	A	86707459	3	1	319	1	0	0	0	0	1	0	0	0	8180	971	34	4	2544	4	KDM3A	2	86707459	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	66251641	86707459	156491914	8	35442										
POTEF	0	genome.wustl.edu	37	chr2	130832042	130832042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ccagggtacatggtggtgccGccagacagcactgtgttggt	15	10	0	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	2	130832042	130832042	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	9	0	0	2	5	71.43	-	-	-	A	130832042	G	A	130832042	2	1	319	1	0	0	0	0	0	0	0	1	12339	1074	38	1		1	POTEF	2	130832042	Silent	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	44124583	130832042	112367331	9	35443										
TTN	0	genome.wustl.edu	37	chr2	179498336	179498336	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tctttgctcacttcacacttCaaagtaatctcatccttctc	2	14	6	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	2	179498336	179498336	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.35046	p.L11682F	0.057	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	160	0	0	83	44	34.65	-	-	-	G	179498336	C	G	179498336	3	3	319	1	0	0	0	0	1	0	0	0	16832	825	29	2	65467	2	TTN	2	179498336	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	48666294	179498336	63701037	10	35444										
INPP5D	0	genome.wustl.edu	37	chr2	233986963	233986963	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ggcgacgaccctgaggaggaCacaggtagggagggagggac	20	8	0	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	2	233986963	233986963	C	A	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	1	known	missense	c.345	p.D115E	0.954	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	55	0	0	22	13	37.14	-	-	-	A	233986963	C	A	233986963	3	1	319	1	0	0	0	0	1	0	0	0	7810	477	17	4	355	4	INPP5D	2	233986963	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	54488627	233986963	9212410	11	35445										
UBA7	0	genome.wustl.edu	37	chr3	49847551	49847551	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tactgtagcactgccccaggTgcccgatgtgcctgcctcca	10	16	0	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	3	49847551	49847551	T	G	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.1699	p.T567P	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	18	0	0	10	6	37.5	-	-	-	G	49847551	T	G	49847551	3	3	319	1	0	0	0	0	1	0	0	0	16930	1696	59	5	1383	5	UBA7	3	49847551	Missense_Mutation	SNP	T	TCGA-AO-A03V-01A-11D-A10Y-09		49847551	148174879	12	35446										
PDZRN3	0	genome.wustl.edu	37	chr3	73432884	73432884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ccggatcttcagggcgcgctCccgcagcaggcggtcccgca	14	17	2	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	3	73432884	73432884	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.2833	p.E945K	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	33	0	0	13	13	50	-	-	-	T	73432884	C	T	73432884	3	4	319	1	0	0	0	0	1	0	0	0	11782	864	30	2	371	2	PDZRN3	3	73432884	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	23585333	73432884	124589546	13	35447										
LRRC34	0	genome.wustl.edu	37	chr3	169524690	169524690	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ggcccaatatcattaaacatGaggtttaagtaaatgagatt	8	5	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	3	169524690	169524690	G	T	SNP	LRRC34	ENST00000446859	human	ensembl	69_37n	-1	known	silent	c.474	p.L158	0.994	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757	194	0	0	110	56	33.73	-	-	-	T	169524690	G	T	169524690	2	4	319	1	0	0	0	0	0	0	0	1	9055	1277	45	2		2	LRRC34	3	169524690	Silent	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	96091806	169524690	28497740	14	35448										
KIAA1109	0	genome.wustl.edu	37	chr4	123109213	123109213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tcgagtcatgcttgttcctaGtccaagatatgttggtcttc	9	9	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	4	123109213	123109213	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.791	p.S264I	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	140	0	0	24	61	71.76	-	-	-	T	123109213	G	T	123109213	3	4	319	1	0	0	0	0	1	0	0	0	8260	1029	36	4	817	4	KIAA1109	4	123109213	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09		123109213	68045063	15	35449										
CDH12	0	genome.wustl.edu	37	chr5	21817115	21817115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tgacgatgtcaaacaaatttCccccatctcctggaacaata	5	12	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	5	21817115	21817115	C	T	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.941	p.G314E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	257	0	0	419	89	17.45	-	-	-	T	21817115	C	T	21817115	3	4	319	1	0	0	0	0	1	0	0	0	3127	855	30	2	1471	2	CDH12	5	21817115	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		21817115	159098145	16	35450										
C9	0	genome.wustl.edu	37	chr5	39288989	39288989	+	Frame_Shift_Del	DEL	A	A	-													0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	agtcttcaatggctctttccAagttttgtttctttaggtgt							TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	5	39288989	39288989	A	-	DEL	C9	ENST00000263408	human	ensembl	69_37n	-1	known	frame_shift_del	c.1481	p.L494fs	1.000	pfam_MACPF,smart_MACPF,prints_MAC_perforin	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C9	HGNC	ENSG00000113600	285	0	0	400	68	14.41	-	-	-	-	39288989	A	-	39288989	7	5	319	1	0	1	0	1	0	0	0	0	2468	131	5	0	206	0	C9	5	39288989	Frame_Shift_Del	DEL	A	TCGA-AO-A03V-01A-11D-A10Y-09	17471874	39288989	141626271	17	35451										
GHR	0	genome.wustl.edu	37	chr5	42695133	42695133	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	atctggataccttattgtatCaagctaactagcaatggtgg	9	7	2	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	5	42695133	42695133	C	G	SNP	GHR	ENST00000511135	human	ensembl	69_37n	1	known	nonsense	c.251	p.S84*	0.999	NULL	NULL	-	no_errors	GHR	HGNC	ENSG00000112964	235	0	0	320	76	19.19	-	-	-	G	42695133	C	G	42695133	4	3	319	1	0	0	0	0	0	1	0	0	6423	816	29	2	395	2	GHR	5	42695133	Nonsense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	3406144	42695133	138220127	18	35452										
PCDHB11	0	genome.wustl.edu	37	chr5	140581431	140581431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctacttggtggtggcgttggCctcggtgtcttcgctcttcc	13	12	2	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	5	140581431	140581431	C	A	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.2084	p.A695D	0.972	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	27	0	0	22	7	24.14	-	-	-	A	140581431	C	A	140581431	3	1	319	1	0	0	0	0	1	0	0	0	11609	739	26	4	2086	4	PCDHB11	5	140581431	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	97886298	140581431	40333829	19	35453										
FBXO30	0	genome.wustl.edu	37	chr6	146127358	146127358	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tggacatccaaagtcactatTtaagcaaggcactcgttcaa	7	10	2	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	6	146127358	146127358	T	G	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.184	p.N62H	1.000	superfamily_TRAF-like,pfscan_Znf_TRAF	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	153	0	0	94	59	38.56	-	-	-	G	146127358	T	G	146127358	3	3	319	1	0	0	0	0	1	0	0	0	5786	1841	64	5	2061	5	FBXO30	6	146127358	Missense_Mutation	SNP	T	TCGA-AO-A03V-01A-11D-A10Y-09		146127358	24987709	20	35454										
IGF2R	0	genome.wustl.edu	37	chr6	160496980	160496980	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tgcttagcggacaagcatttCaactacacctcgctcatcgc	7	14	2	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	6	160496980	160496980	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.5268	p.F1756	0.998	superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	136	0	0	78	37	32.17	-	-	-	T	160496980	C	T	160496980	2	4	319	1	0	0	0	0	0	0	0	1	7630	825	29	2		2	IGF2R	6	160496980	Silent	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	14369622	160496980	10618087	21	35455										
AP4M1	0	genome.wustl.edu	37	chr7	99701247	99701247	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctttacagtttggggctgagAcacaacagagcaaagtggcc	12	9	0	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	7	99701247	99701247	A	G	SNP	AP4M1	ENST00000359593	human	ensembl	69_37n	1	known	missense	c.475	p.T159A	1.000	pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	158	0	0	67	23	25.56	-	-	-	G	99701247	A	G	99701247	3	3	319	1	0	0	0	0	1	0	0	0	754	275	10	5	497	5	AP4M1	7	99701247	Missense_Mutation	SNP	A	TCGA-AO-A03V-01A-11D-A10Y-09		99701247	59437416	22	35456										
FOXP2	0	genome.wustl.edu	37	chr7	114066679	114066679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	cagagatggaagatcaagtgGtgacaccagctctgaagtaa	12	7	2	4			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	7	114066679	114066679	G	A	SNP	FOXP2	ENST00000408937	human	ensembl	69_37n	1	known	missense	c.113	p.G38D	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573	87	0	0	45	7	13.46	-	-	-	A	114066679	G	A	114066679	3	1	319	1	0	0	0	0	1	0	0	0	6075	1261	44	4	115	4	FOXP2	7	114066679	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	14365432	114066679	45071984	23	35457										
DLC1	0	genome.wustl.edu	37	chr8	12947852	12947852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctttaaacaggccatccacaCagtcctggaggaagtgttgg	11	10	0	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	8	12947852	12947852	C	A	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.3983	p.C1328F	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	127	0	0	73	23	23.96	-	-	-	A	12947852	C	A	12947852	3	1	319	1	0	0	0	0	1	0	0	0	4586	478	17	4	619	4	DLC1	8	12947852	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		12947852	133416170	24	35458										
KIAA1429	0	genome.wustl.edu	37	chr8	95541412	95541412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	atcctcttcttcctctacatCcacatcatcttcatcttctt	0	16	8	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	8	95541412	95541412	C	T	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.766	p.D256N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	852	1	0.12	781	336	30.08	-	-	-	T	95541412	C	T	95541412	3	4	319	1	0	0	0	0	1	0	0	0	8283	855	30	2	4798	2	KIAA1429	8	95541412	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	82593560	95541412	50822610	25	35459										
MPDZ	0	genome.wustl.edu	37	chr9	13192136	13192136	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tgcaaatctgataccttttcTgttagctcaatatcacataa	4	9	4	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	9	13192136	13192136	T	C	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	silent	c.1962	p.T654	0.416	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	376	0	0	84	124	59.62	-	-	-	C	13192136	T	C	13192136	2	2	319	1	0	0	0	0	0	0	0	1	9794	1567	55	5		5	MPDZ	9	13192136	Silent	SNP	T	TCGA-AO-A03V-01A-11D-A10Y-09		13192136	128021295	26	35460										
KIAA0368	0	genome.wustl.edu	37	chr9	114176803	114176803	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gatgatgagggtgccatctgCccgcttgacattaaagtccg	12	10	1	3			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	9	114176803	114176803	C	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	silent	c.2427	p.G809	0.894	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	85	0	0	56	30	34.88	-	-	-	A	114176803	C	A	114176803	2	1	319	1	0	0	0	0	0	0	0	1	8223	726	26	4		4	KIAA0368	9	114176803	Silent	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	100984667	114176803	27036628	27	35461										
KIAA1462	0	genome.wustl.edu	37	chr10	30317146	30317146	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	cttgtttttggaactccgttCtcccacccatgcttcctgtg	7	14	1	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	10	30317146	30317146	C	T	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.1931	p.R644K	0.011	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	221	0	0	209	81	27.93	-	-	-	T	30317146	C	T	30317146	3	4	319	1	0	0	0	0	1	0	0	0	8286	913	32	2	2156	2	KIAA1462	10	30317146	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		30317146	105217601	28	35462										
CYP2C8	0	genome.wustl.edu	37	chr10	96802742	96802742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gtatctctggatctcgtgcaCtacagcatcagtgtaaggca	10	10	3	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	10	96802742	96802742	C	A	SNP	CYP2C8	ENST00000371270	human	ensembl	69_37n	-1	known	missense	c.1054	p.V352L	0.029	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115	234	0	0	71	104	59.43	-	-	-	A	96802742	C	A	96802742	3	1	319	1	0	0	0	0	1	0	0	0	4198	565	20	4	430	4	CYP2C8	10	96802742	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	66485596	96802742	38732005	29	35463										
OR4C16	0	genome.wustl.edu	37	chr11	55339821	55339821	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	atctgatacttgcctctctaCttccataacccctagaatga	4	13	2	3			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	11	55339821	55339821	C	A	SNP	OR4C16	ENST00000314634	human	ensembl	69_37n	1	known	missense	c.218	p.T73N	0.109	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	267	0	0	238	29	10.86	-	-	-	A	55339821	C	A	55339821	3	1	319	1	0	0	0	0	1	0	0	0	11122	565	20	4	220	4	OR4C16	11	55339821	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		55339821	79666695	30	35464										
MAP3K11	0	genome.wustl.edu	37	chr11	65365763	65365763	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ggggagtggcctggcccactCaaggccccgcttccggcacc	14	17	1	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	11	65365763	65365763	C	G	SNP	MAP3K11	ENST00000309100	human	ensembl	69_37n	-1	known	nonstop	c.2543	p.*848S	0.074	NULL	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327	18	0	0	3	7	70	-	-	-	G	65365763	C	G	65365763	4	3	319	1	0	0	0	0	0	0	0	0	9316	837	29	2	4	2	MAP3K11	11	65365763	Nonstop_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	10025942	65365763	69640753	31	35465										
PDE3A	0	genome.wustl.edu	37	chr12	20803395	20803395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ataggtaaatgatgatgttgGaatagattggaccaatgaaa	11	2	0	4			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	12	20803395	20803395	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.2786	p.G929E	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	348	0	0	177	105	37.23	-	-	-	A	20803395	G	A	20803395	3	1	319	1	0	0	0	0	1	0	0	0	11710	1174	41	2	2840	2	PDE3A	12	20803395	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09		20803395	113048500	32	35466										
PPFIA2	0	genome.wustl.edu	37	chr12	81678036	81678036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	taaccgtttttgctggagctGcaagattttccatttcttca	7	9	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	12	81678036	81678036	G	A	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.2972	p.A991V	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	242	0	0	159	99	38.37	-	-	-	A	81678036	G	A	81678036	3	1	319	1	0	0	0	0	1	0	0	0	12383	1319	46	4	833	4	PPFIA2	12	81678036	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	60874641	81678036	52173859	33	35467										
PPFIA2	0	genome.wustl.edu	37	chr12	82147913	82147913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	caccatcagctgctcaaaatGggagtctgagtccgagccac	10	13	3	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	12	82147913	82147913	G	T	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.88	p.H30N	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	126	0	0	51	34	40	-	-	-	T	82147913	G	T	82147913	3	4	319	1	0	0	0	0	1	0	0	0	12383	1348	47	4	3805	4	PPFIA2	12	82147913	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	469877	82147913	51703982	34	35468										
THSD1	0	genome.wustl.edu	37	chr13	52971733	52971733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gtctcgcccaagcagcttcaGcaccacggtgacataggctt	10	14	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	13	52971733	52971733	G	A	SNP	THSD1	ENST00000258613	human	ensembl	69_37n	-1	known	silent	c.655	p.L219	0.784	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114	45	0	0	34	4	10.53	-	-	-	A	52971733	G	A	52971733	2	1	319	1	0	0	0	0	0	0	0	1	15972	962	34	4		4	THSD1	13	52971733	Silent	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09		52971733	62198145	35	35469										
RYR3	0	genome.wustl.edu	37	chr15	34023837	34023837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tatacaggctatccaagggaCgttccctcaccaaagcacaa	7	13	1	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	15	34023837	34023837	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.7366	p.R2456C	0.999	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	140	0	0	60	29	32.58	-	-	-	T	34023837	C	T	34023837	3	4	319	1	0	0	0	0	1	0	0	0	13856	536	19	1	7556	1	RYR3	15	34023837	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		34023837	68507555	36	35470										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84373178	84373178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	tcctggagcctatttccttcCcgagtttgcactttctcctc	6	15	1	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	15	84373178	84373178	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.107	p.P36L	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	197	0	0	242	27	10.04	-	-	-	T	84373178	C	T	84373178	3	4	319	1	0	0	0	0	1	0	0	0	276	623	22	4	113	4	ADAMTSL3	15	84373178	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	50349341	84373178	18158214	37	35471										
SSH2	0	genome.wustl.edu	37	chr17	27959760	27959760	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctctggagtctgggccctctCaaggagcagctcatggatgc	13	12	4	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	17	27959760	27959760	C	G	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	missense	c.2371	p.E791Q	0.990	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	246	0	0	292	100	25.45	-	-	-	G	27959760	C	G	27959760	3	3	319	1	0	0	0	0	1	0	0	0	15276	835	29	2	1904	2	SSH2	17	27959760	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		27959760	53235450	38	35472										
TBKBP1	0	genome.wustl.edu	37	chr17	45773639	45773639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ttacggagacatcaaggaacGgctggggggcctggagaggg	19	7	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	17	45773639	45773639	G	A	SNP	TBKBP1	ENST00000361722	human	ensembl	69_37n	1	known	missense	c.161	p.R54Q	1.000	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933	22	0	0	5	8	61.54	-	-	-	A	45773639	G	A	45773639	3	1	319	1	0	0	0	0	1	0	0	0	15733	1116	39	1	163	1	TBKBP1	17	45773639	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	17813879	45773639	35421571	39	35473										
CD300A	0	genome.wustl.edu	37	chr17	72470679	72470679	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ttttgccaccagcatcaacgTcaatgacacctgcaagtatc	6	13	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	17	72470679	72470679	T	A	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	1	known	missense	c.388	p.S130T	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	66	0	0	8	11	57.89	-	-	-	A	72470679	T	A	72470679	3	1	319	1	0	0	0	0	1	0	0	0	3025	1667	58	5	398	5	CD300A	17	72470679	Missense_Mutation	SNP	T	TCGA-AO-A03V-01A-11D-A10Y-09	26697040	72470679	8724531	40	35474										
ANKRD12	0	genome.wustl.edu	37	chr18	9211612	9211612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	aaatcatccatcacaaacaaCgcctgcccaaaagaaaactc	3	14	2	1			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	18	9211612	9211612	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.482	p.T161M	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	199	0	0	123	66	34.92	-	-	-	T	9211612	C	T	9211612	3	4	319	1	0	0	0	0	1	0	0	0	640	536	19	1	500	1	ANKRD12	18	9211612	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		9211612	68865636	41	35475										
SERPINB12	0	genome.wustl.edu	37	chr18	61233851	61233851	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	ctcttgtagcttgaaaggaaAatcacctatgaaaaaatggt	8	6	2	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	18	61233851	61233851	A	T	SNP	SERPINB12	ENST00000269491	human	ensembl	69_37n	1	known	missense	c.825	p.K275N	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634	116	0	0	140	16	10.19	-	-	-	T	61233851	A	T	61233851	3	4	319	1	0	0	0	0	1	0	0	0	14187	11	1	5	851	5	SERPINB12	18	61233851	Missense_Mutation	SNP	A	TCGA-AO-A03V-01A-11D-A10Y-09	52022239	61233851	16843397	42	35476										
C19orf12	0	genome.wustl.edu	37	chr19	30199322	30199322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	cctccaccatgatagtcatcGtggcgggccttcgagggaga	13	12	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	19	30199322	30199322	G	A	SNP	C19orf12	ENST00000392278	human	ensembl	69_37n	-1	known	missense	c.32	p.T11M	0.000	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943	68	0	0	34	16	32	-	-	-	A	30199322	G	A	30199322	3	1	319	1	0	0	0	0	1	0	0	0	1927	1145	40	1	434	1	C19orf12	19	30199322	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09		30199322	28929661	43	35477										
ZNF583	0	genome.wustl.edu	37	chr19	56925731	56925731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	caggagtttctgtttctaagCcagatgtgatctcattattg	9	7	3	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	19	56925731	56925731	C	T	SNP	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	missense	c.154	p.P52S	0.784	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	254	0	0	470	189	28.68	-	-	-	T	56925731	C	T	56925731	3	4	319	1	0	0	0	0	1	0	0	0	18111	739	26	4	164	4	ZNF583	19	56925731	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	26726409	56925731	2203252	44	35478										
CABIN1	0	genome.wustl.edu	37	chr22	24468359	24468359	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	caaggagccccacgtctcttCagtgctaccctggatcattc	8	15	3	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	22	24468359	24468359	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	missense	c.2531	p.S844L	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	41	0	0	22	37	62.71	-	-	-	T	24468359	C	T	24468359	3	4	319	1	0	0	0	0	1	0	0	0	2553	838	29	2	2597	2	CABIN1	22	24468359	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09		24468359	26836207	45	35479										
SGSM1	0	genome.wustl.edu	37	chr22	25294156	25294156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	cgcccagcggaacacccccaCggtgctgcgacctagggatg	13	16	0	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	22	25294156	25294156	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.2405	p.T802M	0.000	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	33	0	0	29	7	19.44	-	-	-	T	25294156	C	T	25294156	3	4	319	1	0	0	0	0	1	0	0	0	14310	536	19	1	2483	1	SGSM1	22	25294156	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	825797	25294156	26010410	46	35480										
POLR2F	0	genome.wustl.edu	37	chr22	38355468	38355468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	agcccgcgtgctgggcacccGagcgctccagattgcgtgag	15	14	0	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	22	38355468	38355468	G	A	SNP	POLR2F	ENST00000442738	human	ensembl	69_37n	1	known	missense	c.206	p.R69Q	1.000	pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2	pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2	-	no_errors	POLR2F	HGNC	ENSG00000100142	43	0	0	30	20	40	-	-	-	A	38355468	G	A	38355468	3	1	319	1	0	0	0	0	1	0	0	0	12293	1058	37	1	216	1	POLR2F	22	38355468	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	13061312	38355468	12949098	47	35481										
ASMTL	0	genome.wustl.edu	37	chrX	1522340	1522340	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gggcgcgctgcgccaccctcTtctcctcatccaggagcgtc	11	18	3	0			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	X	1522340	1522340	T	G	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	missense	c.1688	p.K563T	0.000	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	48	0	0	15	9	37.5	-	-	-	G	1522340	T	G	1522340	3	3	319	1	0	0	0	0	1	0	0	0	1050	1609	56	5	181	5	ASMTL	23	1522340	Missense_Mutation	SNP	T	TCGA-AO-A03V-01A-11D-A10Y-09		1522340	153748220	48	35482										
GPR64	0	genome.wustl.edu	37	chrX	19021075	19021075	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gcccatccatgtgaatgagaCcaagagaaaataatgaagaa	9	7	0	5			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	X	19021075	19021075	C	G	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.2119	p.V707L	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	125	0	0	53	33	38.37	-	-	-	G	19021075	C	G	19021075	3	3	319	1	0	0	0	0	1	0	0	0	6755	507	18	4	958	4	GPR64	23	19021075	Missense_Mutation	SNP	C	TCGA-AO-A03V-01A-11D-A10Y-09	17498735	19021075	136249485	49	35483										
ARAF	0	genome.wustl.edu	37	chrX	47430771	47430771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.22	11	0.0174669314110969	2.46481922494046	4.96164908916587	1.73657718120805	1	1	7	gtcactccccaagattgagcGgagtgcctcggaaccctcct	10	15	1	2			TCGA-AO-A03V-01A-11D-A10Y-09	TCGA-AO-A03V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d88c365f-366a-49d5-9860-b930aab3eb1b	95a2e03d-1cc6-4565-b63f-99c7f2165c4d	X	47430771	47430771	G	A	SNP	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	missense	c.1736	p.R579Q	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	34	0	0	11	15	57.69	-	-	-	A	47430771	G	A	47430771	3	1	319	1	0	0	0	0	1	0	0	0	839	1116	39	1	1794	1	ARAF	23	47430771	Missense_Mutation	SNP	G	TCGA-AO-A03V-01A-11D-A10Y-09	28409696	47430771	107839789	50	35484										
IL28RA	0	genome.wustl.edu	37	chr1	24488039	24488039	+	Frame_Shift_Del	DEL	C	C	-													0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aggagcttcccaccttgtttCcggccccctccttccagaat							TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	24488039	24488039	C	-	DEL	IL28RA	ENST00000327535	human	ensembl	69_37n	-1	known	frame_shift_del	c.503	p.G168fs	0.001	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL28RA	HGNC	ENSG00000185436	101	0	0	28	11	26.83	-	-	-	-	24488039	C	-	24488039	7	5	320	1	0	1	0	1	0	0	0	0	7738	855	30	0	1075	0	IL28RA	1	24488039	Frame_Shift_Del	DEL	C	TCGA-AO-A0J2-01A-11W-A050-09		24488039	224762582	1	35485										
DCST1	0	genome.wustl.edu	37	chr1	155006974	155006974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctggttcctgtggcgccagcCgggcgagtttcctgtcactg	14	13	1	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	155006974	155006974	C	T	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	missense	c.125	p.P42L	0.920	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	70	0	0	20	4	16	-	-	-	T	155006974	C	T	155006974	3	4	320	1	0	0	0	0	1	0	0	0	4333	652	23	1	131	1	DCST1	1	155006974	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	130518935	155006974	94243647	2	35486										
ATP1A4	0	genome.wustl.edu	37	chr1	160121911	160121911	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cctaaaaaagggcttatcaaGaaaaaaatggtgaagaggga	11	4	1	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	160121911	160121911	G	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.81	p.K27N	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	139	0	0	119	92	43.4	-	-	-	C	160121911	G	C	160121911	3	2	320	1	0	0	0	0	1	0	0	0	1135	933	33	2	83	2	ATP1A4	1	160121911	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	5114937	160121911	89128710	3	35487										
CFH	0	genome.wustl.edu	37	chr1	196683022	196683022	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	attacatgtgggaaagatggAtggtcagctcaacccacgtg	12	8	2	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	196683022	196683022	A	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	silent	c.1494	p.G498	0.955	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	42	0	0	70	90	56.25	-	-	-	T	196683022	A	T	196683022	2	4	320	1	0	0	0	0	0	0	0	1	3312	320	12	5		5	CFH	1	196683022	Silent	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	36561111	196683022	52567599	4	35488										
IARS2	0	genome.wustl.edu	37	chr1	220316439	220316439	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	agctgagtacaaggttatcaCtgtgatagaacctggactgc	11	8	1	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	220316439	220316439	C	A	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	missense	c.2714	p.T905N	0.994	superfamily_tRNAsynth_1a_anticodon-bd	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	186	0	0	242	28	10.37	-	-	-	A	220316439	C	A	220316439	3	1	320	1	0	0	0	0	1	0	0	0	7528	565	20	4	2796	4	IARS2	1	220316439	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	23633417	220316439	28934182	5	35489										
WDR35	0	genome.wustl.edu	37	chr2	20131080	20131080	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctgggcattcttcatctgttCatggtattgctctataagta	8	8	5	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	20131080	20131080	C	A	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	nonsense	c.2947	p.E983*	0.987	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	340	0	0	373	69	15.61	-	-	-	A	20131080	C	A	20131080	4	1	320	1	0	0	0	0	0	1	0	0	17386	835	29	2	614	2	WDR35	2	20131080	Nonsense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		20131080	223068293	6	35490										
SLC4A10	0	genome.wustl.edu	37	chr2	162804110	162804110	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gcatggagagtatgttggacGggcctgtggccatgatcacc	15	9	1	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	162804110	162804110	G	C	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	1	known	missense	c.2138	p.R713P	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	168	0	0	171	51	22.97	-	-	-	C	162804110	G	C	162804110	3	2	320	1	0	0	0	0	1	0	0	0	14740	1116	39	3	2289	3	SLC4A10	2	162804110	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	142673030	162804110	80395263	7	35491										
COBLL1	0	genome.wustl.edu	37	chr2	165551133	165551133	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aggggttgtggaacagagtgAggcattttacttaagggaga	16	3	0	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	165551133	165551133	A	T	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	silent	c.3084	p.P1028	0.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	83	0	0	53	15	22.06	-	-	-	T	165551133	A	T	165551133	2	4	320	1	0	0	0	0	0	0	0	1	3684	291	11	5		5	COBLL1	2	165551133	Silent	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	2747023	165551133	77648240	8	35492										
ABCB11	0	genome.wustl.edu	37	chr2	169870851	169870851	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tctaacgccatcacctttctTctcatcttgtaacctgatga	4	13	5	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	169870851	169870851	T	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.112	p.K38*	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	369	0	0	618	334	35.01	-	-	-	A	169870851	T	A	169870851	4	1	320	1	0	0	0	0	0	1	0	0	42	1792	62	5	3953	5	ABCB11	2	169870851	Nonsense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	4319718	169870851	73328522	9	35493										
COL5A2	0	genome.wustl.edu	37	chr2	189943788	189943788	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aacaagaaaacgagcacataCcagaggacccatggcaccca	8	13	0	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	189943788	189943788	C	G	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	splice_site	c.1005+1	e15+1	1.000	-	-	-	no_errors	COL5A2	HGNC	ENSG00000204262	60	0	0	78	30	27.78	-	-	-	G	189943788	C	G	189943788	5	3	320	1	0	0	0	0	0	0	1	0	3727	521	18	4	3653	4	COL5A2	2	189943788	Splice_Site	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	20072937	189943788	53255585	10	35494										
ITPR1	0	genome.wustl.edu	37	chr3	4699915	4699915	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aatgacatctcctccattttCgagctagatcccaccactct	4	15	2	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	4699915	4699915	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	silent	c.1059	p.F353	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	269	0	0	53	419	88.4	-	-	-	T	4699915	C	T	4699915	2	4	320	1	0	0	0	0	0	0	0	1	7974	883	31	1		1	ITPR1	3	4699915	Silent	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		4699915	193322515	11	35495										
OR5H6	0	genome.wustl.edu	37	chr3	97984086	97984086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	taatagcttcattcacaaaaAtgttcaaaagcaatgtttag	5	6	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	97984086	97984086	A	G	SNP	OR5H6	ENST00000383696	human	ensembl	69_37n	1	known	missense	c.958	p.M320V	0.126	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	42	0	0	150	26	14.69	-	-	-	G	97984086	A	G	97984086	3	3	320	1	0	0	0	0	1	0	0	0	11236	101	4	5	960	5	OR5H6	3	97984086	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	93284171	97984086	100038344	12	35496										
ZPLD1	0	genome.wustl.edu	37	chr3	102183084	102183084	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aatgatgacattcgatatgaTcttttccttaggtaagactt	7	6	1	4			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	102183084	102183084	T	A	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	missense	c.798	p.D266E	0.958	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	295	0	0	175	215	55.13	-	-	-	A	102183084	T	A	102183084	3	1	320	1	0	0	0	0	1	0	0	0	18314	1432	50	5	824	5	ZPLD1	3	102183084	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	4198998	102183084	95839346	13	35497										
PLA1A	0	genome.wustl.edu	37	chr3	119336879	119336879	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tgttcaggttatagttatctGatctgtgatcacatgagggc	11	6	4	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	119336879	119336879	G	C	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	silent	c.768	p.L256	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	284	0	0	79	101	56.11	-	-	-	C	119336879	G	C	119336879	2	2	320	1	0	0	0	0	0	0	0	1	12062	1277	45	2		2	PLA1A	3	119336879	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	17153795	119336879	78685551	14	35498										
DZIP1L	0	genome.wustl.edu	37	chr3	137783433	137783433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctcagagctggttctgtagaGaattccagagtaaactctaa	9	8	3	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	137783433	137783433	G	A	SNP	DZIP1L	ENST00000486487	human	ensembl	69_37n	-1	putative	missense	c.287	p.S96F	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DZIP1L	HGNC	ENSG00000158163	87	0	0	25	8	24.24	-	-	-	A	137783433	G	A	137783433	3	1	320	1	0	0	0	0	1	0	0	0	4899	957	33	2		2	DZIP1L	3	137783433	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	18446554	137783433	60238997	15	35499										
POLN	0	genome.wustl.edu	37	chr4	2087377	2087377	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gcaatagctgctcgggcgaaGtccttgattttcttgtactt	10	9	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	4	2087377	2087377	G	C	SNP	POLN	ENST00000382865	human	ensembl	69_37n	-1	known	missense	c.2160	p.D720E	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	59	0	0	16	9	34.62	-	-	-	C	2087377	G	C	2087377	3	2	320	1	0	0	0	0	1	0	0	0	12281	1020	36	4	566	4	POLN	4	2087377	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		2087377	189066899	16	35500										
CDH9	0	genome.wustl.edu	37	chr5	26890538	26890538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	agatgtagctccaacttactTatttctgtggctgtaacagt	8	8	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	5	26890538	26890538	T	C	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.1389	p.I463M	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	60	0	0	134	19	12.42	-	-	-	C	26890538	T	C	26890538	3	2	320	1	0	0	0	0	1	0	0	0	3146	1768	61	5	1000	5	CDH9	5	26890538	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09		26890538	154024722	17	35501										
CAMK2A	0	genome.wustl.edu	37	chr5	149618306	149618306	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gtggtgttggtgctctctgaGgattcctgccaaagagaata	13	7	1	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	5	149618306	149618306	G	T	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	silent	c.1023	p.S341	0.964	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	185	0	0	27	33	55	-	-	-	T	149618306	G	T	149618306	2	4	320	1	0	0	0	0	0	0	0	1	2624	987	35	4		4	CAMK2A	5	149618306	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	122727768	149618306	31296954	18	35502										
ZBTB9	0	genome.wustl.edu	37	chr6	33423207	33423207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tattcagggcgtctccgcctGccactggatgctcttcctgc	10	15	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	33423207	33423207	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	1	known	silent	c.330	p.L110	0.981	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	30	0	0	6	5	45.45	-	-	-	A	33423207	G	A	33423207	2	1	320	1	0	0	0	0	0	0	0	1	17654	1306	46	4		4	ZBTB9	6	33423207	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		33423207	137691860	19	35503										
WASF1	0	genome.wustl.edu	37	chr6	110422929	110422929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tggaacatggggacctggggCagtagatggagttggatgta	18	4	0	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	110422929	110422929	C	T	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.1384	p.A462T	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	504	1	0.2	174	163	47.52	-	-	-	T	110422929	C	T	110422929	3	4	320	1	0	0	0	0	1	0	0	0	17349	710	25	4	303	4	WASF1	6	110422929	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	76999722	110422929	60692138	20	35504										
GPRC6A	0	genome.wustl.edu	37	chr6	117128090	117128090	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aatgattttcttcagtgtccGattgattctgacttcaatgg	8	7	4	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	117128090	117128090	G	T	SNP	GPRC6A	ENST00000310357	human	ensembl	69_37n	-1	known	silent	c.778	p.R260	0.988	pfam_ANF_lig-bd_rcpt	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	299	0	0	279	64	18.66	-	-	-	T	117128090	G	T	117128090	2	4	320	1	0	0	0	0	0	0	0	1	6779	1057	37	3		3	GPRC6A	6	117128090	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	6705161	117128090	53986977	21	35505										
LAMA2	0	genome.wustl.edu	37	chr6	129468133	129468133	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tcggtcaaggatatttcagtTggagggatgtgcatctgcta	13	6	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	129468133	129468133	T	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	silent	c.849	p.V283	0.637	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	158	0	0	87	82	48.52	-	-	-	A	129468133	T	A	129468133	2	1	320	1	0	0	0	0	0	0	0	1	8660	1799	63	5		5	LAMA2	6	129468133	Silent	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	12340043	129468133	41646934	22	35506										
IL22RA2	0	genome.wustl.edu	37	chr6	137466808	137466808	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	acttctctgacttcttctgtCtaacatgggctgatatattt	6	9	4	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	137466808	137466808	C	A	SNP	IL22RA2	ENST00000296980	human	ensembl	69_37n	-1	known	missense	c.745	p.D249Y	0.603	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL22RA2	HGNC	ENSG00000164485	250	0	0	361	74	16.97	-	-	-	A	137466808	C	A	137466808	3	1	320	1	0	0	0	0	1	0	0	0	7728	913	32	2	50	2	IL22RA2	6	137466808	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	7998675	137466808	33648259	23	35507										
ARID1B	0	genome.wustl.edu	37	chr6	157488246	157488246	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ccctacagccagcccatgaaCaacagctctagcctgatgaa	7	15	1	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	157488246	157488246	C	G	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.2913	p.N971K	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	57	0	0	17	14	45.16	-	-	-	G	157488246	C	G	157488246	3	3	320	1	0	0	0	0	1	0	0	0	916	477	17	4	2990	4	ARID1B	6	157488246	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	20021438	157488246	13626821	24	35508										
ITGB8	0	genome.wustl.edu	37	chr7	20431066	20431066	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	actttcagagaaattaatagAcaacaacattaatgtcatct	4	7	3	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	20431066	20431066	A	G	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	1	known	missense	c.1001	p.D334G	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	189	0	0	133	139	50.73	-	-	-	G	20431066	A	G	20431066	3	3	320	1	0	0	0	0	1	0	0	0	7955	275	10	5	1027	5	ITGB8	7	20431066	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09		20431066	138707597	25	35509										
CDCA7L	0	genome.wustl.edu	37	chr7	21942714	21942714	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gcaattgcagatcccacgacAggggggacacacccaatcct	10	14	0	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	21942714	21942714	A	T	SNP	CDCA7L	ENST00000406877	human	ensembl	69_37n	-1	known	missense	c.1216	p.C406S	1.000	pfam_Znf-4CXXC_R1	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649	69	0	0	26	5	16.13	-	-	-	T	21942714	A	T	21942714	3	4	320	1	0	0	0	0	1	0	0	0	3120	188	7	5	156	5	CDCA7L	7	21942714	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	1511648	21942714	137195949	26	35510										
SLC4A2	0	genome.wustl.edu	37	chr7	150767276	150767276	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctgccccaccagccacccaaGtgatgagaaggacttctcct	8	16	1	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	150767276	150767276	G	C	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.1292	p.S431T	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	56	0	0	6	8	57.14	-	-	-	C	150767276	G	C	150767276	3	2	320	1	0	0	0	0	1	0	0	0	14743	1029	36	4	1326	4	SLC4A2	7	150767276	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	128824562	150767276	8371387	27	35511										
PKHD1L1	0	genome.wustl.edu	37	chr8	110503326	110503326	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	atcattcactttacagtgggGgaaggtaatataataatatt	8	4	2	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	8	110503326	110503326	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.10110	p.G3370	0.994	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	56	0	0	113	31	21.09	-	-	-	A	110503326	G	A	110503326	2	1	320	1	0	0	0	0	0	0	0	1	12046	1219	43	4		4	PKHD1L1	8	110503326	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		110503326	35860696	28	35512										
CYP11B1	0	genome.wustl.edu	37	chr8	143961043	143961043	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gtgtacttccaggtgcaggtCctcataaccctgctccctcc	8	16	1	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	8	143961043	143961043	C	G	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	missense	c.187	p.D63H	0.067	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	41	0	0	5	15	75	-	-	-	G	143961043	C	G	143961043	3	3	320	1	0	0	0	0	1	0	0	0	4176	855	30	2	1360	2	CYP11B1	8	143961043	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	33457717	143961043	2402979	29	35513										
FAM154A	0	genome.wustl.edu	37	chr9	18950827	18950827	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cttggcttgaaggactctctGggcaggtaggagtgatagaa	15	6	1	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	18950827	18950827	G	C	SNP	FAM154A	ENST00000380534	human	ensembl	69_37n	-1	known	silent	c.147	p.P49	1.000	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	151	0	0	280	180	38.96	-	-	-	C	18950827	G	C	18950827	2	2	320	1	0	0	0	0	0	0	0	1	5503	1335	47	4		4	FAM154A	9	18950827	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		18950827	122262604	30	35514										
ACO1	0	genome.wustl.edu	37	chr9	32431799	32431799	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	caggcagtggagcgtcagtaTgtcatcccggggatgtttaa	14	8	2	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	32431799	32431799	T	C	SNP	ACO1	ENST00000309951	human	ensembl	69_37n	1	known	silent	c.1809	p.Y603	0.804	superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729	91	0	0	88	36	28.57	-	-	-	C	32431799	T	C	32431799	2	2	320	1	0	0	0	0	0	0	0	1	146	1471	51	5		5	ACO1	9	32431799	Silent	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	13480972	32431799	108781632	31	35515										
FAM75A1	0	genome.wustl.edu	37	chr9	39361273	39361273	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gaggaaacatcaagcaatttTttcagtggattttttcaaag	8	5	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	39361273	39361273	T	C	SNP	FAM75A1	ENST00000377647	human	ensembl	69_37n	1	known	missense	c.3511	p.F1171L	0.000	NULL	NULL	-	no_errors	FAM75A1	HGNC	ENSG00000204849	18	0	0	25	19	43.18	-	-	-	C	39361273	T	C	39361273	3	2	320	1	0	0	0	0	1	0	0	0	5664	1841	64	5	3525	5	FAM75A1	9	39361273	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	6929474	39361273	101852158	32	35516										
SMC5	0	genome.wustl.edu	37	chr9	72959102	72959102	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aaaatagacagagattattgCagaaatgcaaggaacttatg	9	4	0	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	72959102	72959102	C	G	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	missense	c.2440	p.Q814E	0.995	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	267	0	0	66	19	22.35	-	-	-	G	72959102	C	G	72959102	3	3	320	1	0	0	0	0	1	0	0	0	14875	711	25	4	2510	4	SMC5	9	72959102	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	33597829	72959102	68254329	33	35517										
ZNF618	0	genome.wustl.edu	37	chr9	116750696	116750696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tgccgagcaaggaacgatgaCggaggtgaaggtgaagacag	17	6	0	4			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	116750696	116750696	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	missense	c.173	p.T58M	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	137	1	0.72	36	8	18.18	-	-	-	T	116750696	C	T	116750696	3	4	320	1	0	0	0	0	1	0	0	0	18138	536	19	1	183	1	ZNF618	9	116750696	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	43791594	116750696	24462735	34	35518										
PTGS1	0	genome.wustl.edu	37	chr9	125148912	125148912	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tccttcaaggtgggctcccaGgagtacagctacgagcagtt	12	11	1	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	125148912	125148912	G	C	SNP	PTGS1	ENST00000362012	human	ensembl	69_37n	1	known	missense	c.1197	p.Q399H	0.043	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	144	0	0	53	6	10	-	-	-	C	125148912	G	C	125148912	3	2	320	1	0	0	0	0	1	0	0	0	12836	991	35	4	1231	4	PTGS1	9	125148912	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	8398216	125148912	16064519	35	35519										
ASB6	0	genome.wustl.edu	37	chr9	132404204	132404204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cgctcggggtcctggatcccCagggagcccagaatcgcatc	13	15	0	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	132404204	132404204	C	A	SNP	ASB6	ENST00000450050	human	ensembl	69_37n	-1	known	missense	c.20	p.W7L	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB6	HGNC	ENSG00000148331	13	0	0	4	6	60	-	-	-	A	132404204	C	A	132404204	3	1	320	1	0	0	0	0	1	0	0	0	1031	581	21	4	1214	4	ASB6	9	132404204	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	7255292	132404204	8809227	36	35520										
PHYH	0	genome.wustl.edu	37	chr10	13325816	13325816	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tcctcgtagtcctggatcccGtggaacattttgttaactcc	8	12	0	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	10	13325816	13325816	G	A	SNP	PHYH	ENST00000263038	human	ensembl	69_37n	-1	known	silent	c.702	p.H234	0.987	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537	168	0	0	155	96	38.25	-	-	-	A	13325816	G	A	13325816	2	1	320	1	0	0	0	0	0	0	0	1	11938	1136	40	1		1	PHYH	10	13325816	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		13325816	122208931	37	35521										
SORCS1	0	genome.wustl.edu	37	chr10	108367018	108367018	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tggtgggtaagccagggagcAccgccaccaggatgtgctgg	17	10	0	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	10	108367018	108367018	A	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	missense	c.3071	p.V1024E	0.998	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	103	0	0	14	11	44	-	-	-	T	108367018	A	T	108367018	3	4	320	1	0	0	0	0	1	0	0	0	15019	159	6	5	685	5	SORCS1	10	108367018	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	95041202	108367018	27167729	38	35522										
MPEG1	0	genome.wustl.edu	37	chr11	58978653	58978653	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctgatgagggctgggtgctgGctgaagcccccggggcactt	17	11	0	3			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	58978653	58978653	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	silent	c.1686	p.S562	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	75	0	0	25	7	21.88	-	-	-	A	58978653	G	A	58978653	2	1	320	1	0	0	0	0	0	0	0	1	9795	1194	42	4		4	MPEG1	11	58978653	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09		58978653	76027863	39	35523										
C1QTNF5	0	genome.wustl.edu	37	chr11	119213687	119213688	+	Frame_Shift_Ins	INS	-	-	G													0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	atggtgcgaggagacgaggtINSgggggggtggctctgctcca							TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	119213687	119213688	-	G	INS	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1151_1150	p.H384fs	0.000:0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	9	0	0	4	2	33.33	-	-	-	G	119213688	-	G	119213687	7	5	320	1	0	1	1	0	0	0	0	0	1985	1696	59	0		0	C1QTNF5	11	119213687	Frame_Shift_Ins	INS	-	TCGA-AO-A0J2-01A-11W-A050-09	60235034	119213687	15792829	40	35524										
OR6T1	0	genome.wustl.edu	37	chr11	123814411	123814411	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tctatccagctgagcacaatAattagcagcttgcctgtggc	9	11	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	123814411	123814411	A	T	SNP	OR6T1	ENST00000321252	human	ensembl	69_37n	-1	known	silent	c.135	p.I45	0.035	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	101	0	0	34	50	59.52	-	-	-	T	123814411	A	T	123814411	2	4	320	1	0	0	0	0	0	0	0	1	11283	358	13	5		5	OR6T1	11	123814411	Silent	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	4600724	123814411	11192105	41	35525										
NAV3	0	genome.wustl.edu	37	chr12	78594278	78594278	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cgactattccttccttgcccCatggatgtagaaggttctag	9	11	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	12	78594278	78594278	C	A	SNP	NAV3	ENST00000552895	human	ensembl	69_37n	1	novel	missense	c.3358	p.H1120N	0.247	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAV3	HGNC	ENSG00000067798	119	0	0	220	137	38.38	-	-	-	A	78594278	C	A	78594278	3	1	320	1	0	0	0	0	1	0	0	0	10257	581	21	4	6821	4	NAV3	12	78594278	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		78594278	55257617	42	35526										
TMTC4	0	genome.wustl.edu	37	chr13	101316591	101316591	+	Splice_Site	SNP	C	C	A													0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ggcgtttctgcttggaggtcCtgcagggtcacaaaggggat							TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	13	101316591	101316591	C	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	splice_site	c.220-1	e3-1	1.000	-	-	-	no_errors	TMTC4	HGNC	ENSG00000125247	171	0	0	72	31	30.1	-	-	-	A	101316591	C	A	101316591	5	1	320	1	0	0	0	0	0	0	1	0	16358	695	24	4	2127	4	TMTC4	13	101316591	Splice_Site	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		101316591	13853287	43	35527	283	2								
TMTC4	0	genome.wustl.edu	37	chr13	101316592	101316592	+	Splice_Site	SNP	T	T	A													0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gcgtttctgcttggaggtccTgcagggtcacaaaggggatg							TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	13	101316592	101316592	T	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	splice_site	c.220-2	e3-2	1.000	-	-	-	no_errors	TMTC4	HGNC	ENSG00000125247	172	0	0	71	32	31.07	-	-	-	A	101316592	T	A	101316592	5	1	320	1	0	0	0	0	0	0	1	0	16358	1594	55	5	2128	5	TMTC4	13	101316592	Splice_Site	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09	1	101316592	13853286	44	35528	283	2								
ADAMTS17	0	genome.wustl.edu	37	chr15	100801723	100801723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	catccaccaggggcgggtcgTccttcccgccgggaacctgg	14	16	0	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	15	100801723	100801723	T	C	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.992	p.D331G	0.999	pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	58	0	0	10	8	44.44	-	-	-	C	100801723	T	C	100801723	3	2	320	1	0	0	0	0	1	0	0	0	262	1667	58	5	2363	5	ADAMTS17	15	100801723	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09		100801723	1729669	45	35529										
CEMP1	0	genome.wustl.edu	37	chr16	2580811	2580811	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gatctcagcccacaagccccAggggcagcccaggaaagcag	12	15	1	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	16	2580811	2580811	A	C	SNP	CEMP1	ENST00000382350	human	ensembl	69_37n	-1	known	silent	c.264	p.P88	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923	29	0	0	10	7	41.18	-	-	-	C	2580811	A	C	2580811	2	2	320	1	0	0	0	0	0	0	0	1	3253	175	7	5		5	CEMP1	16	2580811	Silent	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09		2580811	87773942	46	35530										
ITGAX	0	genome.wustl.edu	37	chr16	31382656	31382656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ctcggtgctctgcccgcaggAccagacctgtgctctgggtg	14	14	2	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	16	31382656	31382656	A	G	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.1843	p.T615A	0.982	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	52	0	0	11	5	31.25	-	-	-	G	31382656	A	G	31382656	3	3	320	1	0	0	0	0	1	0	0	0	7943	289	10	5	1905	5	ITGAX	16	31382656	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09	28801845	31382656	58972097	47	35531										
C17orf97	0	genome.wustl.edu	37	chr17	263747	263747	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ttccacactgaccccaatgcCgaggaggcccctgagaactt	9	15	0	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	17	263747	263747	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	silent	c.1113	p.A371	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	32	0	0	6	4	40	-	-	-	T	263747	C	T	263747	2	4	320	1	0	0	0	0	0	0	0	1	1909	639	23	1		1	C17orf97	17	263747	Silent	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		263747	80931463	48	35532										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	134	0	0	22	32	58.18	-	-	-	T	7578406	C	T	7578406	3	4	320	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	7314659	7578406	73616804	49	35533										
LPIN2	0	genome.wustl.edu	37	chr18	2937724	2937724	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ggcgagtctactttagctgcCggtttggattctgagggcgc	15	9	2	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	18	2937724	2937724	C	G	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	silent	c.1134	p.P378	0.741	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	114	1	0.87	33	28	45.9	-	-	-	G	2937724	C	G	2937724	2	3	320	1	0	0	0	0	0	0	0	1	8985	639	23	3		3	LPIN2	18	2937724	Silent	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		2937724	75139524	50	35534										
ZFP161	0	genome.wustl.edu	37	chr18	5291511	5291511	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	aaggcttgaggggtctgggaCcccaagtcttttgattctgg	14	8	3	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	18	5291511	5291511	C	T	SNP	ZFP161	ENST00000357006	human	ensembl	69_37n	-1	known	silent	c.696	p.G232	0.997	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZFP161	HGNC	ENSG00000198081	46	0	0	15	22	59.46	-	-	-	T	5291511	C	T	5291511	2	4	320	1	0	0	0	0	0	0	0	1	17736	494	18	4		4	ZFP161	18	5291511	Silent	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	2353787	5291511	72785737	51	35535										
AKAP8L	0	genome.wustl.edu	37	chr19	15514361	15514361	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gcaccatatctaagcgctggTtaattctggataaaacggaa	9	8	2	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	15514361	15514361	T	A	SNP	AKAP8L	ENST00000397410	human	ensembl	69_37n	-1	known	missense	c.287	p.N96I	1.000	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243	94	0	0	26	11	29.73	-	-	-	A	15514361	T	A	15514361	3	1	320	1	0	0	0	0	1	0	0	0	458	1725	60	5	1697	5	AKAP8L	19	15514361	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09		15514361	43614622	52	35536										
WIZ	0	genome.wustl.edu	37	chr19	15547847	15547847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cgaagtcacgtaggtgggccCgggcgtggctggagaggccg	20	10	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	15547847	15547847	C	T	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.2366	p.R789Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	67	0	0	11	8	42.11	-	-	-	T	15547847	C	T	15547847	3	4	320	1	0	0	0	0	1	0	0	0	17472	652	23	1	2109	1	WIZ	19	15547847	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	33486	15547847	43581136	53	35537										
NWD1	0	genome.wustl.edu	37	chr19	16870120	16870120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gtgtaccgagattggaccccGcccagcaaggagctgctgcg	14	13	0	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	16870120	16870120	G	A	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	silent	c.1854	p.P618	0.206	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	83	0	0	14	12	46.15	-	-	-	A	16870120	G	A	16870120	2	1	320	1	0	0	0	0	0	0	0	1	10854	1074	38	1		1	NWD1	19	16870120	Silent	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	1322273	16870120	42258863	54	35538										
ATP4A	0	genome.wustl.edu	37	chr19	36054333	36054333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cagcttctccttcctcttgcCacccccgccacccgccttct	4	23	3	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	36054333	36054333	C	T	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.109	p.G37S	0.989	pfam_ATPase_P-typ_H/K-transp_N	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	230	0	0	71	41	36.61	-	-	-	T	36054333	C	T	36054333	3	4	320	1	0	0	0	0	1	0	0	0	1149	594	21	4	3082	4	ATP4A	19	36054333	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	19184213	36054333	23074650	55	35539										
DYRK1B	0	genome.wustl.edu	37	chr19	40319129	40319129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ttcagcgagacgccgcggaaGtgggtgttgcgcaggaggtc	18	9	1	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	40319129	40319129	G	C	SNP	DYRK1B	ENST00000323039	human	ensembl	69_37n	-1	known	missense	c.615	p.H205Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204	285	0	0	40	20	33.33	-	-	-	C	40319129	G	C	40319129	3	2	320	1	0	0	0	0	1	0	0	0	4890	1020	36	4	1298	4	DYRK1B	19	40319129	Missense_Mutation	SNP	G	TCGA-AO-A0J2-01A-11W-A050-09	4264796	40319129	18809854	56	35540										
TGM3	0	genome.wustl.edu	37	chr20	2298032	2298032	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	gattccttcccgggtgatcaCcaacttcaactcagctcatg	7	14	4	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	20	2298032	2298032	C	A	SNP	TGM3	ENST00000381458	human	ensembl	69_37n	1	known	missense	c.884	p.T295N	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780	178	0	0	31	20	39.22	-	-	-	A	2298032	C	A	2298032	3	1	320	1	0	0	0	0	1	0	0	0	15926	507	18	4	910	4	TGM3	20	2298032	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		2298032	60727488	57	35541										
PLCB1	0	genome.wustl.edu	37	chr20	8637898	8637898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	tttcctcaacaacctttgccCtcgacctgaaattgataaca	4	13	1	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	20	8637898	8637898	C	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.662	p.P221H	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	138	1	0.72	131	67	33.84	-	-	-	A	8637898	C	A	8637898	3	1	320	1	0	0	0	0	1	0	0	0	12101	681	24	4	692	4	PLCB1	20	8637898	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	6339866	8637898	54387622	58	35542										
DNAJC28	0	genome.wustl.edu	37	chr21	34860854	34860854	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ttcagttggtgtcattggatTcccaagttttttcctagaca	8	8	2	1			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	21	34860854	34860854	T	C	SNP	DNAJC28	ENST00000314399	human	ensembl	69_37n	-1	known	missense	c.847	p.N283D	1.000	NULL	pfam_DnaJ_homolog_subfam-C_membr-28,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC28	HGNC	ENSG00000177692	140	0	0	169	51	23.18	-	-	-	C	34860854	T	C	34860854	3	2	320	1	0	0	0	0	1	0	0	0	4681	1783	62	5	323	5	DNAJC28	21	34860854	Missense_Mutation	SNP	T	TCGA-AO-A0J2-01A-11W-A050-09		34860854	13269041	59	35543										
AGPAT3	0	genome.wustl.edu	37	chr21	45400990	45400990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	ccaccattctcctgtctcccCtcttcagttttgtcttgggc	6	16	5	0			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	21	45400990	45400990	C	A	SNP	AGPAT3	ENST00000291572	human	ensembl	69_37n	1	known	missense	c.964	p.L322I	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT3	HGNC	ENSG00000160216	66	0	0	55	8	12.7	-	-	-	A	45400990	C	A	45400990	3	1	320	1	0	0	0	0	1	0	0	0	388	681	24	4	990	4	AGPAT3	21	45400990	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09	10540136	45400990	2728905	60	35544										
AIFM3	0	genome.wustl.edu	37	chr22	21334332	21334332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	cgacgaggtgatcgccgtggCcagcatgaactacgatccca	12	13	0	2			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	21334332	21334332	C	T	SNP	AIFM3	ENST00000399167	human	ensembl	69_37n	1	known	missense	c.1676	p.A559V	1.000	superfamily_FAD/NAD-linked_Rdtase_dimer	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773	39	0	0	6	9	60	-	-	-	T	21334332	C	T	21334332	3	4	320	1	0	0	0	0	1	0	0	0	428	739	26	4	1764	4	AIFM3	22	21334332	Missense_Mutation	SNP	C	TCGA-AO-A0J2-01A-11W-A050-09		21334332	29970234	61	35545										
GTSE1	0	genome.wustl.edu	37	chr22	46704300	46704300	+	Frame_Shift_Del	DEL	G	G	-													0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	agcttggaattaaataatccGgttcccgaacagcctccgtt							TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	46704300	46704300	G	-	DEL	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	frame_shift_del	c.222	p.V75fs	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	34	0	0	12	30	69.77	-	-	-	-	46704300	G	-	46704300	7	5	320	1	0	1	0	1	0	0	0	0	6936	1103	39	0	232	0	GTSE1	22	46704300	Frame_Shift_Del	DEL	G	TCGA-AO-A0J2-01A-11W-A050-09	25369968	46704300	4600266	62	35546										
SPANXN4	0	genome.wustl.edu	37	chrX	142121829	142121829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0483870967741935	3	0.994628167771038	0.704959318093762	1.04840103716508	0.425912921348315	1	1	0	agaagaagaagaatctgcacAgagcctcagcccctgaacag	10	11	2	6			TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	X	142121829	142121829	A	G	SNP	SPANXN4	ENST00000446864	human	ensembl	69_37n	1	known	missense	c.97	p.R33G	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN4	HGNC	ENSG00000189326	654	0	0	726	434	37.32	-	-	-	G	142121829	A	G	142121829	3	3	320	1	0	0	0	0	1	0	0	0	15084	180	7	5	103	5	SPANXN4	23	142121829	Missense_Mutation	SNP	A	TCGA-AO-A0J2-01A-11W-A050-09		142121829	13148731	63	35547										
DDI2	0	genome.wustl.edu	37	chr1	15978378	15978378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	cagaagcccttcaaaaatcaGcagaggatgcaggtatttgg	11	8	2	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	15978378	15978378	G	T	SNP	DDI2	ENST00000480945	human	ensembl	69_37n	1	known	missense	c.1171	p.A391S	0.996	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,pfam_Ubiquitin,superfamily_Peptidase_aspartic,pfscan_Ubiquitin_supergroup	-	no_errors	DDI2	HGNC	ENSG00000197312	176	0	0	39	47	54.65	-	-	-	T	15978378	G	T	15978378	3	4	321	1	0	0	0	0	1	0	0	0	4360	971	34	4	1201	4	DDI2	1	15978378	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		15978378	233272243	1	35548										
GPSM2	0	genome.wustl.edu	37	chr1	109465061	109465061	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aatcagtgcagatactattgGagatgaagggttctttgact	11	5	2	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	109465061	109465061	G	C	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.1463	p.G488A	1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	148	0	0	66	60	47.62	-	-	-	C	109465061	G	C	109465061	3	2	321	1	0	0	0	0	1	0	0	0	6786	1174	41	2	1509	2	GPSM2	1	109465061	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	93486683	109465061	139785560	2	35549										
LRIG2	0	genome.wustl.edu	37	chr1	113662083	113662083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	agccaacagagagccatctgCctttcccaccaaccatgaga	7	15	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	113662083	113662083	C	T	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	missense	c.2909	p.A970V	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	294	0	0	140	49	25.93	-	-	-	T	113662083	C	T	113662083	3	4	321	1	0	0	0	0	1	0	0	0	9011	739	26	4	2975	4	LRIG2	1	113662083	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	4197022	113662083	135588538	3	35550										
SPTA1	0	genome.wustl.edu	37	chr1	158583632	158583632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gaactctttgtgagtcaggcGccctgtcaaattctcatcaa	8	11	5	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	158583632	158583632	G	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6868	p.R2290S	0.979	pfscan_EF_HAND_2	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	144	0	0	81	41	33.61	-	-	-	T	158583632	G	T	158583632	3	4	321	1	0	0	0	0	1	0	0	0	15207	1087	38	3	403	3	SPTA1	1	158583632	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	44921549	158583632	90666989	4	35551										
OR6N1	0	genome.wustl.edu	37	chr1	158735726	158735726	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aggatgctcccatagaagatGagaaccacagtgaagtggga	13	7	0	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	158735726	158735726	G	A	SNP	OR6N1	ENST00000335094	human	ensembl	69_37n	-1	known	silent	c.747	p.L249	0.910	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6N1	HGNC	ENSG00000197403	461	0	0	204	117	36.34	-	-	-	A	158735726	G	A	158735726	2	1	321	1	0	0	0	0	0	0	0	1	11279	1277	45	2		2	OR6N1	1	158735726	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	152094	158735726	90514895	5	35552										
PYHIN1	0	genome.wustl.edu	37	chr1	158912052	158912052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aggtgaatgaagcctcttctGtatctgaagctggtcctgac	11	9	3	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	158912052	158912052	G	T	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.865	p.V289L	0.017	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	96	0	0	37	15	28.85	-	-	-	T	158912052	G	T	158912052	3	4	321	1	0	0	0	0	1	0	0	0	12948	1377	48	4	879	4	PYHIN1	1	158912052	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	176326	158912052	90338569	6	35553										
KIF21B	0	genome.wustl.edu	37	chr1	200959737	200959737	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tccatgtcagcctccaggttGacaatggtcattctctgcat	8	12	3	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	200959737	200959737	G	C	SNP	KIF21B	ENST00000477146	human	ensembl	69_37n	-1	known	nonsense	c.158	p.S53*	0.993	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF21B	HGNC	ENSG00000116852	115	0	0	26	77	74.76	-	-	-	C	200959737	G	C	200959737	4	2	321	1	0	0	0	0	0	1	0	0	8341	1277	45	2	2136	2	KIF21B	1	200959737	Nonsense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	42047685	200959737	48290884	7	35554										
KIF21B	0	genome.wustl.edu	37	chr1	200960092	200960092	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggcgcaggatggtcccccaaGaagtggttgattttgcggtt	15	8	0	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	200960092	200960092	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	silent	c.2640	p.F880	0.974	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	60	0	0	36	46	56.1	-	-	-	A	200960092	G	A	200960092	2	1	321	1	0	0	0	0	0	0	0	1	8341	933	33	2		2	KIF21B	1	200960092	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	355	200960092	48290529	8	35555										
CR1	0	genome.wustl.edu	37	chr1	207785317	207785317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgacttcctgggccaactccCtcatggccgtgtgctacttc	9	15	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	1	207785317	207785317	C	T	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.6506	p.P2169L	0.107	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	337	0	0	128	43	25.15	-	-	-	T	207785317	C	T	207785317	3	4	321	1	0	0	0	0	1	0	0	0	3870	681	24	4	6660	4	CR1	1	207785317	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	6825225	207785317	41465304	9	35556										
EGR4	0	genome.wustl.edu	37	chr2	73519008	73519008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgggggaaaggggtgggcggCggcggcggcacgggtggtgc	26	7	0	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	73519008	73519008	C	T	SNP	EGR4	ENST00000545030	human	ensembl	69_37n	-1	known	silent	c.1347	p.P449	0.338	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625	17	0	0	8	7	46.67	-	-	-	T	73519008	C	T	73519008	2	4	321	1	0	0	0	0	0	0	0	1	5009	755	27	1		1	EGR4	2	73519008	Silent	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		73519008	169680365	10	35557										
RPIA	0	genome.wustl.edu	37	chr2	89034083	89034083	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atacagatcgaccttgccatCgatggtgctgatgaagtaga	11	8	0	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	89034083	89034083	C	T	SNP	RPIA	ENST00000283646	human	ensembl	69_37n	1	known	silent	c.477	p.I159	0.980	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	-	no_errors	RPIA	HGNC	ENSG00000153574	554	0	0	252	88	25.81	-	-	-	T	89034083	C	T	89034083	2	4	321	1	0	0	0	0	0	0	0	1	13639	874	31	1		1	RPIA	2	89034083	Silent	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	15515075	89034083	154165290	11	35558										
IL1R1	0	genome.wustl.edu	37	chr2	102781403	102781403	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gcctccaggattcatcaacaCaaagagaaactttggtttgt	8	9	2	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	102781403	102781403	C	G	SNP	IL1R1	ENST00000233946	human	ensembl	69_37n	1	known	missense	c.231	p.H77Q	0.011	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,prints_IL1R_rcpt,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1R1	HGNC	ENSG00000115594	246	0	0	95	44	31.65	-	-	-	G	102781403	C	G	102781403	3	3	321	1	0	0	0	0	1	0	0	0	7712	477	17	4	237	4	IL1R1	2	102781403	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	13747320	102781403	140417970	12	35559										
POTEE	0	genome.wustl.edu	37	chr2	132021475	132021475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	cctgaaccccaaggccaaccGcgagaagatgacccagatca	9	15	1	5			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	132021475	132021475	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	missense	c.2447	p.R816H	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	48	0	0	21	3	12.5	-	-	-	A	132021475	G	A	132021475	3	1	321	1	0	0	0	0	1	0	0	0	12338	1087	38	1	2505	1	POTEE	2	132021475	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	29240072	132021475	111177898	13	35560										
TTN	0	genome.wustl.edu	37	chr2	179403912	179403912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	catctttgggccgggaccagGacaagctaacagaactcttg	11	11	2	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	179403912	179403912	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.91046	p.S30349F	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	302	0	0	135	68	33.5	-	-	-	A	179403912	G	A	179403912	3	1	321	1	0	0	0	0	1	0	0	0	16832	1174	41	2	9269	2	TTN	2	179403912	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	47382437	179403912	63795461	14	35561										
TTN	0	genome.wustl.edu	37	chr2	179444429	179444429	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gcttaaggatttcataactcGttgccacttattttcttcag	6	9	3	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	179444429	179444429	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.59791	p.R19931*	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	120	0	0	73	25	25.51	-	-	-	A	179444429	G	A	179444429	4	1	321	1	0	0	0	0	0	1	0	0	16832	1153	40	1	40660	1	TTN	2	179444429	Nonsense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	40517	179444429	63754944	15	35562										
SLC16A14	0	genome.wustl.edu	37	chr2	230924025	230924026	+	Frame_Shift_Ins	INS	-	-	G													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgtctttttgtctttggggcINScatcttcaaaatcataccca							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	230924025	230924026	-	G	INS	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	frame_shift_ins	c.44_43	p.G15fs	0.969:1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	228	0	0	93	39	29.55	-	-	-	G	230924026	-	G	230924025	7	5	321	1	0	1	1	0	0	0	0	0	14496	739	26	0	1504	0	SLC16A14	2	230924025	Frame_Shift_Ins	INS	-	TCGA-AO-A0J3-01A-11W-A050-09	51479596	230924025	12275348	16	35563										
MLPH	0	genome.wustl.edu	37	chr2	238436082	238436082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tggccgatgtggacacctctGatgaggaaagcatccgggct	14	10	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	2	238436082	238436082	G	A	SNP	MLPH	ENST00000264605	human	ensembl	69_37n	1	known	missense	c.943	p.D315N	0.464	NULL	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MLPH	HGNC	ENSG00000115648	164	0	0	44	38	45.78	-	-	-	A	238436082	G	A	238436082	3	1	321	1	0	0	0	0	1	0	0	0	9704	1290	45	2	969	2	MLPH	2	238436082	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	7512057	238436082	4763291	17	35564										
CELSR3	0	genome.wustl.edu	37	chr3	48687978	48687978	+	Frame_Shift_Del	DEL	C	C	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ttgtctggggccaccacacaCcagatctcagggacttaggg							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	3	48687978	48687978	C	-	DEL	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	frame_shift_del	c.6407	p.G2136fs	1.000	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	37	0	0	9	2	18.18	-	-	-	-	48687978	C	-	48687978	7	5	321	1	0	1	0	1	0	0	0	0	3252	507	18	0	3611	0	CELSR3	3	48687978	Frame_Shift_Del	DEL	C	TCGA-AO-A0J3-01A-11W-A050-09		48687978	149334452	18	35565										
RNF123	0	genome.wustl.edu	37	chr3	49736199	49736199	+	Frame_Shift_Del	DEL	G	G	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tcatggcaggcgtgggcagcGggggacatcgtgagctgcct							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	3	49736199	49736199	G	-	DEL	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	frame_shift_del	c.582	p.D196fs	0.960	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	75	0	0	12	6	33.33	-	-	-	-	49736199	G	-	49736199	7	5	321	1	0	1	0	1	0	0	0	0	13519	1103	39	0	612	0	RNF123	3	49736199	Frame_Shift_Del	DEL	G	TCGA-AO-A0J3-01A-11W-A050-09	1048221	49736199	148286231	19	35566										
ZBBX	0	genome.wustl.edu	37	chr3	167083758	167083758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ccagatttccagtaatactcGcttgacctttaatatatata	4	9	0	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	3	167083758	167083758	G	A	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	silent	c.189	p.S63	0.995	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	159	0	0	53	22	29.33	-	-	-	A	167083758	G	A	167083758	2	1	321	1	0	0	0	0	0	0	0	1	17613	1078	38	1		1	ZBBX	3	167083758	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	117347559	167083758	30938672	20	35567										
SH3TC1	0	genome.wustl.edu	37	chr4	8224596	8224596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgcgatttttctcaatgaggAagaaaagtcattcttcagcg	9	7	4	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	4	8224596	8224596	A	C	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	missense	c.1142	p.E381A	0.939	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	88	0	0	11	4	26.67	-	-	-	C	8224596	A	C	8224596	3	2	321	1	0	0	0	0	1	0	0	0	14350	246	9	5	1176	5	SH3TC1	4	8224596	Missense_Mutation	SNP	A	TCGA-AO-A0J3-01A-11W-A050-09		8224596	182929680	21	35568										
SYNPO2	0	genome.wustl.edu	37	chr4	119944647	119944647	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggagatgaagtggtttccatCaatggcaacccttgtgcaga	12	8	1	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	4	119944647	119944647	C	T	SNP	SYNPO2	ENST00000504178	human	ensembl	69_37n	1	novel	nonsense	c.22	p.Q8*	1.000	superfamily_PDZ,pfscan_PDZ	superfamily_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYNPO2	HGNC	ENSG00000172403	131	0	0	90	18	16.67	-	-	-	T	119944647	C	T	119944647	4	4	321	1	0	0	0	0	0	1	0	0	15549	816	29	2	174	2	SYNPO2	4	119944647	Nonsense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	111720051	119944647	71209629	22	35569										
C5orf42	0	genome.wustl.edu	37	chr5	37170358	37170360	+	In_Frame_Del	DEL	GTT	GTT	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	agactgagactgctgtacaaGttgttgtgtatctgggagat							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	5	37170358	37170360	GTT	-	DEL	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	in_frame_del	c.6247_6245	p.Q2082in_frame_del	0.000:0.000:0.004	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	292	0	0	173	50	22.32	-	-	-	-	37170360	GTT	-	37170358	7	5	321	1	0	1	0	1	0	0	0	0	2322	1029	36	0	3426	0	C5orf42	5	37170358	In_Frame_Del	DEL	GTT	TCGA-AO-A0J3-01A-11W-A050-09		37170358	143744902	23	35570										
PCDHA1	0	genome.wustl.edu	37	chr5	140166325	140166325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gaatctagactcctgaattcGcgttttccgatagaaggagc	10	9	1	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	5	140166325	140166325	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.450	p.S150	0.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	118	0	0	23	20	46.51	-	-	-	A	140166325	G	A	140166325	2	1	321	1	0	0	0	0	0	0	0	1	11592	1074	38	1		1	PCDHA1	5	140166325	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	102995967	140166325	40748935	24	35571										
SLC25A2	0	genome.wustl.edu	37	chr5	140683389	140683389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ctgtcccccctgcggcccccGctgtgaggtcgatggcggct	14	17	0	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	5	140683389	140683389	G	A	SNP	SLC25A2	ENST00000239451	human	ensembl	69_37n	-1	known	missense	c.44	p.A15V	0.632	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329	68	0	0	8	22	73.33	-	-	-	A	140683389	G	A	140683389	3	1	321	1	0	0	0	0	1	0	0	0	14571	1087	38	1	865	1	SLC25A2	5	140683389	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	517064	140683389	40231871	25	35572										
GABRA6	0	genome.wustl.edu	37	chr5	161119043	161119043	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgccatggattggttcatagCtgtttgctttgcattcgtct	10	8	2	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	5	161119043	161119043	C	A	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	missense	c.923	p.A308D	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	192	0	0	86	29	25.22	-	-	-	A	161119043	C	A	161119043	3	1	321	1	0	0	0	0	1	0	0	0	6214	797	28	4	953	4	GABRA6	5	161119043	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	20435654	161119043	19796217	26	35573										
RGS14	0	genome.wustl.edu	37	chr5	176793928	176793928	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gcaacatctaccaggagttcCtgtccagccaggcgctgagc	11	14	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	5	176793928	176793928	C	T	SNP	RGS14	ENST00000408923	human	ensembl	69_37n	1	known	silent	c.376	p.L126	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS14	HGNC	ENSG00000169220	70	0	0	18	12	40	-	-	-	T	176793928	C	T	176793928	2	4	321	1	0	0	0	0	0	0	0	1	13381	680	24	4		4	RGS14	5	176793928	Silent	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	15674885	176793928	4121332	27	35574										
DEFB113	0	genome.wustl.edu	37	chr6	49936562	49936562	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tttttctctctgcaacttctCttgtttttttctgtggaact	5	9	4	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	6	49936562	49936562	C	G	SNP	DEFB113	ENST00000398718	human	ensembl	69_37n	-1	known	missense	c.77	p.R26T	0.000	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642	190	0	0	106	69	39.43	-	-	-	G	49936562	C	G	49936562	3	3	321	1	0	0	0	0	1	0	0	0	4437	913	32	2	167	2	DEFB113	6	49936562	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		49936562	121178505	28	35575										
DST	0	genome.wustl.edu	37	chr6	56819269	56819270	+	Frame_Shift_Ins	INS	-	-	TC													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tccctttctggagcttgcggINStgccagcagcagaagaagac							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	6	56819269	56819270	-	TC	INS	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.117_116	p.H39fs	1.000:1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	48	0	0	14	14	50	-	-	-	TC	56819270	-	TC	56819269	7	5	321	1	0	1	1	0	0	0	0	0	4818	1276	44	0		0	DST	6	56819269	Frame_Shift_Ins	INS	-	TCGA-AO-A0J3-01A-11W-A050-09	6882707	56819269	114295798	29	35576										
UTRN	0	genome.wustl.edu	37	chr6	145095471	145095471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgcctaccgtacagcaatcaAaatccgaagactacaaaaag	6	11	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	6	145095471	145095471	A	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.8603	p.K2868T	1.000	pfam_EF-hand_dom_typ1,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	362	1	0.28	144	103	41.7	-	-	-	C	145095471	A	C	145095471	3	2	321	1	0	0	0	0	1	0	0	0	17200	14	1	5	8837	5	UTRN	6	145095471	Missense_Mutation	SNP	A	TCGA-AO-A0J3-01A-11W-A050-09	88276202	145095471	26019596	30	35577										
C6orf118	0	genome.wustl.edu	37	chr6	165715773	165715773	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ctggcgtctcgcagtgcttcCacttcaggtacactggtcag	11	13	3	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	6	165715773	165715773	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	nonsense	c.38	p.W13*	0.123	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	41	0	0	8	7	46.67	-	-	-	T	165715773	C	T	165715773	4	4	321	1	0	0	0	0	0	1	0	0	2344	595	21	4	1403	4	C6orf118	6	165715773	Nonsense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	20620302	165715773	5399294	31	35578										
FAM20C	0	genome.wustl.edu	37	chr7	296993	296993	+	Frame_Shift_Del	DEL	C	C	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aacatggaccgtcaccactaCgagacttttgagaagtttgg							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	7	296993	296993	C	-	DEL	FAM20C	ENST00000313766	human	ensembl	69_37n	1	known	frame_shift_del	c.1386	p.Y462fs	0.985	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	57	0	0	18	2	10	-	-	-	-	296993	C	-	296993	7	5	321	1	0	1	0	1	0	0	0	0	5581	547	19	0		0	FAM20C	7	296993	Frame_Shift_Del	DEL	C	TCGA-AO-A0J3-01A-11W-A050-09		296993	158841670	32	35579										
CREB5	0	genome.wustl.edu	37	chr7	28547244	28547244	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ctgttttcagatcaaactccGaccccaacgagattcctgaa	6	13	2	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	7	28547244	28547244	G	A	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	silent	c.180	p.P60	0.266	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	115	0	0	73	22	23.16	-	-	-	A	28547244	G	A	28547244	2	1	321	1	0	0	0	0	0	0	0	1	3890	1045	37	1		1	CREB5	7	28547244	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	28250251	28547244	130591419	33	35580										
CA1	0	genome.wustl.edu	37	chr8	86241930	86241930	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aactctacctgctctgagctGacactgatgctctccttaca	6	14	3	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	8	86241930	86241930	G	A	SNP	CA1	ENST00000521679	human	ensembl	69_37n	-1	novel	nonsense	c.466	p.Q156*	0.981	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CA1	HGNC	ENSG00000133742	327	0	0	222	61	21.55	-	-	-	A	86241930	G	A	86241930	4	1	321	1	0	0	0	0	0	1	0	0	2535	1277	45	2	136	2	CA1	8	86241930	Nonsense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		86241930	60122092	34	35581										
CNTLN	0	genome.wustl.edu	37	chr9	17226215	17226215	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atctagagaaaaacagaaatCtgaagctaaagacagaaaag	8	5	2	5			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	9	17226215	17226215	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.464	p.S155F	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	41	0	0	16	16	50	-	-	-	T	17226215	C	T	17226215	3	4	321	1	0	0	0	0	1	0	0	0	3669	913	32	2	474	2	CNTLN	9	17226215	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		17226215	123987216	35	35582										
ODF2	0	genome.wustl.edu	37	chr9	131247750	131247750	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gctggaaattattgtcctgaAtgagtacgtcttagagtagg	12	5	1	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	9	131247750	131247750	A	T	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.1397	p.N466I	0.987	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	205	0	0	86	39	31.2	-	-	-	T	131247750	A	T	131247750	3	4	321	1	0	0	0	0	1	0	0	0	10900	101	4	5	1498	5	ODF2	9	131247750	Missense_Mutation	SNP	A	TCGA-AO-A0J3-01A-11W-A050-09	114021535	131247750	9965681	36	35583										
LCN10	0	genome.wustl.edu	37	chr9	139634403	139634403	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggctgagggcacagcttaccGtctttcgggaggatgacggc	16	10	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	9	139634403	139634403	G	C	SNP	LCN10	ENST00000497771	human	ensembl	69_37n	-1	known	missense	c.573	p.D191E	0.486	superfamily_Calycin-like	superfamily_Calycin-like	-	no_errors	LCN10	HGNC	ENSG00000187922	154	0	0	65	9	12.16	-	-	-	C	139634403	G	C	139634403	3	2	321	1	0	0	0	0	1	0	0	0	8735	1159	40	3	37	3	LCN10	9	139634403	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	8386653	139634403	1579028	37	35584										
GATA3	0	genome.wustl.edu	37	chr10	8115942	8115943	+	Frame_Shift_Del	DEL	TT	TT	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	acccgccatccagcctgtccTttggaccacaccacccctcc							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	8115942	8115943	TT	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1291_1292	p.F431fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	109	0	0	96	18	15.65	-	-	-	-	8115943	TT	-	8115942	7	5	321	1	0	1	0	1	0	0	0	0	6305	1609	56	0	1309	0	GATA3	10	8115942	Frame_Shift_Del	DEL	TT	TCGA-AO-A0J3-01A-11W-A050-09		8115942	127418805	38	35585										
FRMD4A	0	genome.wustl.edu	37	chr10	13708296	13708296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atctgggactgaatggcaaaCtctcgttccaggcgttccag	11	11	2	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	13708296	13708296	C	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.1404	p.E468D	1.000	pfam_DUF3338	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	147	0	0	42	11	20.75	-	-	-	A	13708296	C	A	13708296	3	1	321	1	0	0	0	0	1	0	0	0	6100	564	20	4	1743	4	FRMD4A	10	13708296	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	5592354	13708296	121826451	39	35586										
MYO3A	0	genome.wustl.edu	37	chr10	26463134	26463134	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atctgtagttacccagcgtgCaccgatatgcagccaggagg	12	11	1	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	26463134	26463134	C	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.3941	p.A1314E	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	326	1	0.31	239	57	19.26	-	-	-	A	26463134	C	A	26463134	3	1	321	1	0	0	0	0	1	0	0	0	10148	710	25	4	4051	4	MYO3A	10	26463134	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	12754838	26463134	109071613	40	35587										
KIAA1462	0	genome.wustl.edu	37	chr10	30318049	30318049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggggcgatctgtatgagggcGgaggcacgtacactggaggt	19	7	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	30318049	30318049	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.1028	p.P343L	1.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	79	0	0	73	19	20.65	-	-	-	A	30318049	G	A	30318049	3	1	321	1	0	0	0	0	1	0	0	0	8286	1116	39	1	3059	1	KIAA1462	10	30318049	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	3854915	30318049	105216698	41	35588										
NRP1	0	genome.wustl.edu	37	chr10	33543059	33543059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tggtgctatactgggaagaaGctgtgatctggtcagaatga	14	5	2	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	33543059	33543059	G	A	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	missense	c.878	p.A293V	0.994	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	164	0	0	168	41	19.52	-	-	-	A	33543059	G	A	33543059	3	1	321	1	0	0	0	0	1	0	0	0	10733	971	34	4	1952	4	NRP1	10	33543059	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	3225010	33543059	101991688	42	35589										
SUFU	0	genome.wustl.edu	37	chr10	104356987	104356987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atgacctgagccggccccccGaggatgacgaggacagccgg	15	14	0	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	10	104356987	104356987	G	A	SNP	SUFU	ENST00000369902	human	ensembl	69_37n	1	known	missense	c.847	p.E283K	1.000	pfam_SUFU_C,pirsf_Suppressor_of_fused_protein	pfam_SUFU_C,pfam_SUFU_domain,pirsf_Suppressor_of_fused_protein	-	no_errors	SUFU	HGNC	ENSG00000107882	71	0	0	30	7	18.92	-	-	-	A	104356987	G	A	104356987	3	1	321	1	0	0	0	0	1	0	0	0	15459	1059	37	1	873	1	SUFU	10	104356987	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	70813928	104356987	31177760	43	35590										
MMP26	0	genome.wustl.edu	37	chr11	5010971	5010971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgcaacaattccatcggaatGggacagacctacttgacatg	9	10	0	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	5010971	5010971	G	T	SNP	MMP26	ENST00000300762	human	ensembl	69_37n	1	known	missense	c.193	p.G65W	0.006	superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	-	no_errors	MMP26	HGNC	ENSG00000167346	114	0	0	37	19	33.93	-	-	-	T	5010971	G	T	5010971	3	4	321	1	0	0	0	0	1	0	0	0	9735	1348	47	4	199	4	MMP26	11	5010971	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		5010971	129995545	44	35591										
TRIM34	0	genome.wustl.edu	37	chr11	5624497	5624497	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	attctacaggcaggaaacatCttagaaatcagggttgggca	11	7	3	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	5624497	5624497	C	G	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	missense	c.39	p.I13M	0.009	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	175	1	0.57	57	20	25.97	-	-	-	G	5624497	C	G	5624497	3	3	321	1	0	0	0	0	1	0	0	0	16604	903	32	2		2	TRIM34	11	5624497	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	613526	5624497	129382019	45	35592										
TUB	0	genome.wustl.edu	37	chr11	8060462	8060462	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ccttctttctgggtttctttCtttgccgagacagggatttt	9	9	4	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	8060462	8060462	C	A	SNP	TUB	ENST00000305253	human	ensembl	69_37n	1	known	missense	c.42	p.F14L	0.042	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	248	0	0	127	27	17.53	-	-	-	A	8060462	C	A	8060462	3	1	321	1	0	0	0	0	1	0	0	0	16839	912	32	2	44	2	TUB	11	8060462	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	2435965	8060462	126946054	46	35593										
SBF2	0	genome.wustl.edu	37	chr11	10015496	10015496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ttgagtgggataaagctgttCgtggaggaggaaaagcatga	16	3	0	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	10015496	10015496	C	T	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342Q	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	193	0	0	95	16	14.41	-	-	-	T	10015496	C	T	10015496	3	4	321	1	0	0	0	0	1	0	0	0	13946	884	31	1	4648	1	SBF2	11	10015496	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	1955034	10015496	124991020	47	35594										
HNRNPUL2	0	genome.wustl.edu	37	chr11	62491838	62491839	+	Frame_Shift_Ins	INS	-	-	C													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ctcatcccgctgtctctttaINSccccccgccgctcaccatct							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	62491838	62491839	-	C	INS	HNRNPUL2	ENST00000301785	human	ensembl	69_37n	-1	known	frame_shift_ins	c.599_598	p.V200fs	1.000:1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753	161	0	0	50	23	31.51	-	-	-	C	62491839	-	C	62491838	7	5	321	1	0	1	1	0	0	0	0	0	7326	391	14	0	1696	0	HNRNPUL2	11	62491838	Frame_Shift_Ins	INS	-	TCGA-AO-A0J3-01A-11W-A050-09	52476342	62491838	72514678	48	35595										
SLCO2B1	0	genome.wustl.edu	37	chr11	74880325	74880325	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gctacacagaaacccagcatCtgagtgtggtggggatcatg	13	9	2	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	74880325	74880325	C	A	SNP	SLCO2B1	ENST00000289575	human	ensembl	69_37n	1	known	missense	c.556	p.L186M	0.005	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491	62	0	0	12	13	52	-	-	-	A	74880325	C	A	74880325	3	1	321	1	0	0	0	0	1	0	0	0	14816	912	32	2	574	2	SLCO2B1	11	74880325	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	12388487	74880325	60126191	49	35596										
ARHGAP20	0	genome.wustl.edu	37	chr11	110451528	110451528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	aactccctgaggtaggaaagCtttgaatccagatagtcgat	10	8	0	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	110451528	110451528	C	A	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.2142	p.K714N	0.369	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	80	0	0	20	25	55.56	-	-	-	A	110451528	C	A	110451528	3	1	321	1	0	0	0	0	1	0	0	0	872	796	28	4	1437	4	ARHGAP20	11	110451528	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	35571203	110451528	24554988	50	35597										
NCAPD3	0	genome.wustl.edu	37	chr11	134062803	134062803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tctgcacgcatctaggctgaGccttaggagtgaaagattat	11	8	2	3			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	11	134062803	134062803	G	A	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	missense	c.1826	p.A609V	1.000	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	120	0	0	48	24	33.33	-	-	-	A	134062803	G	A	134062803	3	1	321	1	0	0	0	0	1	0	0	0	10278	985	34	4	2750	4	NCAPD3	11	134062803	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	23611275	134062803	943713	51	35598										
GRIN2B	0	genome.wustl.edu	37	chr12	13716856	13716856	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tcggcgacggtaggccagctCgatctcgtcaaactccctgc	11	15	2	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	12	13716856	13716856	C	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	nonsense	c.3316	p.E1106*	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	85	0	0	16	17	51.52	-	-	-	A	13716856	C	A	13716856	4	1	321	1	0	0	0	0	0	1	0	0	6831	893	31	3	1142	3	GRIN2B	12	13716856	Nonsense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		13716856	120135039	52	35599										
ESPL1	0	genome.wustl.edu	37	chr12	53682947	53682948	+	Frame_Shift_Ins	INS	-	-	CC													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ttagtcactgtcctcctagtINSgggctctatgcccacctctg							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	12	53682947	53682948	-	CC	INS	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	frame_shift_ins	c.4782_4783	p.G1594fs	0.986:0.974	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	125	0	0	26	59	69.41	-	-	-	CC	53682948	-	CC	53682947	7	5	321	1	0	1	1	0	0	0	0	0	5290	1693	59	0	4860	0	ESPL1	12	53682947	Frame_Shift_Ins	INS	-	TCGA-AO-A0J3-01A-11W-A050-09	39966091	53682947	80168948	53	35600										
CLIP1	0	genome.wustl.edu	37	chr12	122845563	122845563	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gccactgagctcatggagctGagggaagaggcagaagggct	17	8	1	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	12	122845563	122845563	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	silent	c.948	p.L316	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	129	0	0	54	22	28.95	-	-	-	A	122845563	G	A	122845563	2	1	321	1	0	0	0	0	0	0	0	1	3562	1277	45	2		2	CLIP1	12	122845563	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	69162616	122845563	11006332	54	35601										
SPATA13	0	genome.wustl.edu	37	chr13	24858359	24858359	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gctatgaagacctctgccagGccagccctcggtacctgcag	11	15	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	13	24858359	24858359	G	T	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	1	known	missense	c.2251	p.A751S	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	70	0	0	29	4	12.12	-	-	-	T	24858359	G	T	24858359	3	4	321	1	0	0	0	0	1	0	0	0	15091	1203	42	4	2265	4	SPATA13	13	24858359	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		24858359	90311519	55	35602										
EAPP	0	genome.wustl.edu	37	chr14	35002708	35002708	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	atatcatcgtagtaccttgtCggagctgttgcaacttttcc	8	10	1	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	14	35002708	35002708	C	T	SNP	EAPP	ENST00000250454	human	ensembl	69_37n	-1	known	silent	c.294	p.P98	0.000	NULL	pfam_E2F-assoc_phosphoprotein	-	no_errors	EAPP	HGNC	ENSG00000129518	378	0	0	214	69	24.38	-	-	-	T	35002708	C	T	35002708	2	4	321	1	0	0	0	0	0	0	0	1	4912	871	31	1		1	EAPP	14	35002708	Silent	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		35002708	72346832	56	35603										
MKRN3	0	genome.wustl.edu	37	chr15	23812230	23812230	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	agatgagcctcctgggccagGtggtgggtcattcagcgcat	15	10	2	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	23812230	23812230	G	C	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.1301	p.G434A	0.042	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	174	1	0.57	44	65	59.63	-	-	-	C	23812230	G	C	23812230	3	2	321	1	0	0	0	0	1	0	0	0	9679	1261	44	4	1303	4	MKRN3	15	23812230	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		23812230	78719162	57	35604										
MAGEL2	0	genome.wustl.edu	37	chr15	23889881	23889881	+	Frame_Shift_Del	DEL	G	G	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gaattatcctgggtggcactGgatcccggagagacacttgc							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	23889881	23889881	G	-	DEL	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	frame_shift_del	c.1200	p.S401fs	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	67	0	0	17	2	10.53	-	-	-	-	23889881	G	-	23889881	7	5	321	1	0	1	0	1	0	0	0	0	9260	1335	47	0	744	0	MAGEL2	15	23889881	Frame_Shift_Del	DEL	G	TCGA-AO-A0J3-01A-11W-A050-09	77651	23889881	78641511	58	35605										
RNF111	0	genome.wustl.edu	37	chr15	59368377	59368380	+	Frame_Shift_Del	DEL	CTCT	CTCT	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ccccagccccctccacagccCtctctctcatcatgtcgaca							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	CTCT	CTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	59368377	59368380	CTCT	-	DEL	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	frame_shift_del	c.1911_1914	p.L639fs	0.975:0.997:1.000:0.991	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	121	0	0	102	24	18.75	-	-	-	-	59368380	CTCT	-	59368377	7	5	321	1	0	1	0	1	0	0	0	0	13511	668	24	0	1933	0	RNF111	15	59368377	Frame_Shift_Del	DEL	CTCT	TCGA-AO-A0J3-01A-11W-A050-09	35478496	59368377	43163015	59	35606										
LACTB	0	genome.wustl.edu	37	chr15	63433916	63433916	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tcccccaagaggaatcattgTttctatcatatgtaacatgc	6	10	3	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	63433916	63433916	T	C	SNP	LACTB	ENST00000261893	human	ensembl	69_37n	1	known	missense	c.1556	p.V519A	0.997	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	-	no_errors	LACTB	HGNC	ENSG00000103642	107	0	0	33	48	58.54	-	-	-	C	63433916	T	C	63433916	3	2	321	1	0	0	0	0	1	0	0	0	8651	1725	60	5	1582	5	LACTB	15	63433916	Missense_Mutation	SNP	T	TCGA-AO-A0J3-01A-11W-A050-09	4065539	63433916	39097476	60	35607										
POLG	0	genome.wustl.edu	37	chr15	89870240	89870240	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	accttcttagctttcttctgCttaaattcttgcaggtccca	5	12	4	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	89870240	89870240	C	A	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.1488	p.K496N	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	77	0	0	47	10	17.54	-	-	-	A	89870240	C	A	89870240	3	1	321	1	0	0	0	0	1	0	0	0	12274	796	28	4	2295	4	POLG	15	89870240	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	26436324	89870240	12661152	61	35608										
ADAMTS17	0	genome.wustl.edu	37	chr15	100537592	100537592	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gcaagcccaggcacccacctGtgaccactcagacgcctccc	8	20	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	15	100537592	100537592	G	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	nonsense	c.2794	p.Q932*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	36	0	0	21	5	19.23	-	-	-	A	100537592	G	A	100537592	4	1	321	1	0	0	0	0	0	1	0	0	262	1386	48	4	509	4	ADAMTS17	15	100537592	Nonsense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	10667352	100537592	1993800	62	35609										
ALKBH5	0	genome.wustl.edu	37	chr17	18110148	18110148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggacaagattagatgcacccCggttggaaacaaagtccctg	11	10	0	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	17	18110148	18110148	C	T	SNP	ALKBH5	ENST00000399138	human	ensembl	69_37n	1	known	missense	c.871	p.R291W	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542	153	0	0	9	23	71.88	-	-	-	T	18110148	C	T	18110148	3	4	321	1	0	0	0	0	1	0	0	0	530	643	23	1	881	1	ALKBH5	17	18110148	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		18110148	63085062	63	35610										
PGAP3	0	genome.wustl.edu	37	chr17	37842260	37842260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	actcatacttacagtcgtccCgacaggtccagcctgaaaca	7	14	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	17	37842260	37842260	C	T	SNP	PGAP3	ENST00000300658	human	ensembl	69_37n	-1	known	missense	c.194	p.R65Q	0.033	pfam_Per1	pfam_Per1	-	no_errors	PGAP3	HGNC	ENSG00000161395	117	1	0.85	16	22	57.89	-	-	-	T	37842260	C	T	37842260	3	4	321	1	0	0	0	0	1	0	0	0	11853	652	23	1	796	1	PGAP3	17	37842260	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	19732112	37842260	43352950	64	35611										
HSF5	0	genome.wustl.edu	37	chr17	56565462	56565463	+	Frame_Shift_Ins	INS	-	-	C													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	cccccgcagtcccgccaccgINSccccccggcccgggcgggct							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	17	56565462	56565463	-	C	INS	HSF5	ENST00000323777	human	ensembl	69_37n	-1	known	frame_shift_ins	c.174_173	p.G59fs	0.000:0.110	smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160	10	0	0	5	3	37.5	-	-	-	C	56565463	-	C	56565462	7	5	321	1	0	1	1	0	0	0	0	0	7450	1074	38	0	1640	0	HSF5	17	56565462	Frame_Shift_Ins	INS	-	TCGA-AO-A0J3-01A-11W-A050-09	18723202	56565462	24629748	65	35612										
ZNF536	0	genome.wustl.edu	37	chr19	31048070	31048070	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	acattttcttgcaggtaagtGacactccctgtcctagtcgg	9	11	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	19	31048070	31048070	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.3902	p.*1301	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	319	0	0	63	36	36.36	-	-	-	A	31048070	G	A	31048070	2	1	321	1	0	0	0	0	0	0	0	1	18070	1285	45	2		2	ZNF536	19	31048070	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		31048070	28080913	66	35613										
SPTBN4	0	genome.wustl.edu	37	chr19	41008789	41008789	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gcacagaggtttgaccacaaGgtggctatgagggagagctg	16	7	0	4			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	19	41008789	41008789	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	silent	c.1311	p.K437	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	58	0	0	24	9	27.27	-	-	-	A	41008789	G	A	41008789	2	1	321	1	0	0	0	0	0	0	0	1	15212	991	35	4		4	SPTBN4	19	41008789	Silent	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	9960719	41008789	18120194	67	35614										
ZFP28	0	genome.wustl.edu	37	chr19	57066677	57066677	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	catactggagagtcgtcaacAtgcccctctttaccttccac	6	15	2	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	19	57066677	57066677	A	G	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	silent	c.2523	p.T841	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	374	0	0	79	80	50	-	-	-	G	57066677	A	G	57066677	2	3	321	1	0	0	0	0	0	0	0	1	17738	204	8	5		5	ZFP28	19	57066677	Silent	SNP	A	TCGA-AO-A0J3-01A-11W-A050-09	16057888	57066677	2062306	68	35615										
TRIM28	0	genome.wustl.edu	37	chr19	59059870	59059870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	caggcaagattgtggcagagCgtcctggcactaactcaaca	11	11	1	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	19	59059870	59059870	C	T	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	missense	c.1234	p.R412C	1.000	NULL	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	25	0	0	9	4	30.77	-	-	-	T	59059870	C	T	59059870	3	4	321	1	0	0	0	0	1	0	0	0	16598	768	27	1	1268	1	TRIM28	19	59059870	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	1993193	59059870	69113	69	35616										
PKIG	0	genome.wustl.edu	37	chr20	43243339	43243339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	acatgggcgagctggcactcGagggggcaggttagagccag	18	9	0	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	20	43243339	43243339	G	A	SNP	PKIG	ENST00000349959	human	ensembl	69_37n	1	known	missense	c.142	p.E48K	0.918	pfam_cAMP_dep_PKI	pfam_cAMP_dep_PKI	-	no_errors	PKIG	HGNC	ENSG00000168734	242	0	0	107	37	25.69	-	-	-	A	43243339	G	A	43243339	3	1	321	1	0	0	0	0	1	0	0	0	12049	1059	37	1	144	1	PKIG	20	43243339	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09		43243339	19782181	70	35617										
SRPX	0	genome.wustl.edu	37	chrX	38016148	38016148	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ggccctgcctcgaggactcaCctgcagcattcctagctgga	11	15	1	0			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	X	38016148	38016148	C	G	SNP	SRPX	ENST00000378533	human	ensembl	69_37n	-1	known	splice_site	c.1089+1	e8+1	1.000	-	-	-	no_errors	SRPX	HGNC	ENSG00000101955	138	0	0	113	13	10.32	-	-	-	G	38016148	C	G	38016148	5	3	321	1	0	0	0	0	0	0	1	0	15255	521	18	4	316	4	SRPX	23	38016148	Splice_Site	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09		38016148	117254412	71	35618										
WDR13	0	genome.wustl.edu	37	chrX	48457035	48457035	+	RNA	DEL	C	C	-													0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	cacctcactctcctgccgtaCccccccccccgagctgattg							TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	X	48457035	48457035	C	-	DEL	WDR13	ENST00000479279	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940	18	0	0	6	2	25	-	-	-	-	48457035	C	-	48457035	6	5	321	0	1	1	0	1	0	0	0	0	17372	522	18	0		0	WDR13	23	48457035	RNA	DEL	C	TCGA-AO-A0J3-01A-11W-A050-09	10440887	48457035	106813525	72	35619										
POU3F4	0	genome.wustl.edu	37	chrX	82763876	82763876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	tgggctcgcaccattgccagGatcactccgacgaggagacg	13	13	1	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	X	82763876	82763876	G	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	missense	c.544	p.D182Y	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	118	0	0	80	17	17.53	-	-	-	T	82763876	G	T	82763876	3	4	321	1	0	0	0	0	1	0	0	0	12350	1174	41	2	546	2	POU3F4	23	82763876	Missense_Mutation	SNP	G	TCGA-AO-A0J3-01A-11W-A050-09	34306841	82763876	72506684	73	35620										
C1GALT1C1	0	genome.wustl.edu	37	chrX	119760251	119760251	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	ttggggtgataagtcattgcCtctttaatagaaagcccaac	9	8	2	2			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	X	119760251	119760251	C	A	SNP	C1GALT1C1	ENST00000304661	human	ensembl	69_37n	-1	known	missense	c.771	p.E257D	0.998	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155	424	0	0	181	25	12.14	-	-	-	A	119760251	C	A	119760251	3	1	321	1	0	0	0	0	1	0	0	0	1972	680	24	4	189	4	C1GALT1C1	23	119760251	Missense_Mutation	SNP	C	TCGA-AO-A0J3-01A-11W-A050-09	36996375	119760251	35510309	74	35621										
AFF2	0	genome.wustl.edu	37	chrX	148037437	148037437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146666666666667	11	0.191021303001507	1.68198874296435	2.35096153846154	1.51981351981352	0.110701305693902	0.555209625480185	0	gtcaacaactagtgagacagTgtctcaaaggacaattggga	11	7	2	1			TCGA-AO-A0J3-01A-11W-A050-09	TCGA-AO-A0J3-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff706355-867e-4968-99ad-0af4e24ece51	ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8	X	148037437	148037437	T	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.1862	p.V621A	0.009	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	161	0	0	92	12	11.54	-	-	-	C	148037437	T	C	148037437	3	2	321	1	0	0	0	0	1	0	0	0	357	1696	59	5	1959	5	AFF2	23	148037437	Missense_Mutation	SNP	T	TCGA-AO-A0J3-01A-11W-A050-09	28277186	148037437	7233123	75	35622										
ZMYM4	0	genome.wustl.edu	37	chr1	35851767	35851767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gtatacgcaacttctgcagcTacagctgtgtggtagctttc	10	10	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	35851767	35851767	T	G	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.1813	p.Y605D	1.000	smart_TRASH	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	104	0	0	62	27	30.34	-	-	-	G	35851767	T	G	35851767	3	3	322	1	0	0	0	0	1	0	0	0	17798	1522	53	5	1855	5	ZMYM4	1	35851767	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09		35851767	213398854	1	35623										
ZC3H12A	0	genome.wustl.edu	37	chr1	37948444	37948445	+	Frame_Shift_Ins	INS	-	-	C													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gtgccaatgctctcctctcaINSccccccagagccccaagcaa							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	37948444	37948445	-	C	INS	ZC3H12A	ENST00000373082	human	ensembl	69_37n	1	known	frame_shift_ins	c.1032_1033	p.R346fs	0.255:0.982	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	26	0	0	13	2	13.33	-	-	-	C	37948445	-	C	37948444	7	5	322	1	0	1	1	0	0	0	0	0	17657	146	6	0	1050	0	ZC3H12A	1	37948444	Frame_Shift_Ins	INS	-	TCGA-AO-A0J4-01A-11W-A050-09	2096677	37948444	211302177	2	35624										
INPP5B	0	genome.wustl.edu	37	chr1	38397539	38397539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	cggagcccgccccctgtggcCgggcctcctccaatccccac	10	22	0	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	38397539	38397539	C	A	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.578	p.R193L	0.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	12	0	0	16	5	23.81	-	-	-	A	38397539	C	A	38397539	3	1	322	1	0	0	0	0	1	0	0	0	7809	667	23	3		3	INPP5B	1	38397539	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	449095	38397539	210853082	3	35625										
C1orf210	0	genome.wustl.edu	37	chr1	43748740	43748740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agtgcctgggccaggggccaCagcagacgctgtggggagct	18	11	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	43748740	43748740	C	G	SNP	C1orf210	ENST00000423420	human	ensembl	69_37n	-1	known	missense	c.58	p.V20L	0.000	NULL	NULL	-	no_errors	C1orf210	HGNC	ENSG00000253313	103	0	0	93	42	31.11	-	-	-	G	43748740	C	G	43748740	3	3	322	1	0	0	0	0	1	0	0	0	2049	478	17	4	287	4	C1orf210	1	43748740	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	5351201	43748740	205501881	4	35626										
PODN	0	genome.wustl.edu	37	chr1	53535536	53535536	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	cctgcaggcaccatggcccaGagccgggtgctgctgctcct	13	16	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	53535536	53535536	G	C	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	missense	c.153	p.Q51H	0.833	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	9	0	0	5	6	54.55	-	-	-	C	53535536	G	C	53535536	3	2	322	1	0	0	0	0	1	0	0	0	12252	933	33	2	159	2	PODN	1	53535536	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	9786796	53535536	195715085	5	35627										
OLFML3	0	genome.wustl.edu	37	chr1	114523022	114523022	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctgcgggacttcaagaacaaGatgctgccactgctggaggt	13	10	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	114523022	114523022	G	C	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	missense	c.183	p.K61N	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	118	0	0	119	51	30	-	-	-	C	114523022	G	C	114523022	3	2	322	1	0	0	0	0	1	0	0	0	10932	933	33	2	189	2	OLFML3	1	114523022	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	60987486	114523022	134727599	6	35628										
AMPD1	0	genome.wustl.edu	37	chr1	115216584	115216584	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gacagtgagatcattagcccTttctgaaggaaatccaaaaa	8	8	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	115216584	115216584	T	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.2019	p.K673N	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	71	0	0	46	26	36.11	-	-	-	A	115216584	T	A	115216584	3	1	322	1	0	0	0	0	1	0	0	0	585	1606	56	5	335	5	AMPD1	1	115216584	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	693562	115216584	134034037	7	35629										
TBX15	0	genome.wustl.edu	37	chr1	119428004	119428004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gattacacagctggctttctCggcagcccacattgaaagtg	10	11	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	119428004	119428004	C	T	SNP	TBX15	ENST00000369429	human	ensembl	69_37n	-1	known	missense	c.1160	p.R387Q	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX15	HGNC	ENSG00000092607	78	0	0	123	38	23.6	-	-	-	T	119428004	C	T	119428004	3	4	322	1	0	0	0	0	1	0	0	0	15747	884	31	1	652	1	TBX15	1	119428004	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	4211420	119428004	129822617	8	35630										
TTC24	0	genome.wustl.edu	37	chr1	156555562	156555562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tctagcttctagttgccccaCgtttaccaagcacacgccct	6	16	2	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	156555562	156555562	C	T	SNP	TTC24	ENST00000368236	human	ensembl	69_37n	1	known	missense	c.1514	p.T505M	0.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC24	HGNC	ENSG00000187862	69	0	0	126	31	19.75	-	-	-	T	156555562	C	T	156555562	3	4	322	1	0	0	0	0	1	0	0	0	16789	536	19	1	1544	1	TTC24	1	156555562	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	37127558	156555562	92695059	9	35631										
ARHGAP30	0	genome.wustl.edu	37	chr1	161018344	161018344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tccttcagttgctgcttctgGgcttctgctgtcttcaccat	8	13	5	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	161018344	161018344	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	missense	c.2467	p.P823S	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	187	0	0	291	61	17.33	-	-	-	A	161018344	G	A	161018344	3	1	322	1	0	0	0	0	1	0	0	0	881	1232	43	4	842	4	ARHGAP30	1	161018344	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	4462782	161018344	88232277	10	35632										
STX6	0	genome.wustl.edu	37	chr1	180957443	180957443	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agcaccccgatgctgccagaGaccagctccaactgctcatc	8	17	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	180957443	180957443	G	A	SNP	STX6	ENST00000258301	human	ensembl	69_37n	-1	known	silent	c.528	p.V176	1.000	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823	132	0	0	109	23	17.42	-	-	-	A	180957443	G	A	180957443	2	1	322	1	0	0	0	0	0	0	0	1	15440	929	33	2		2	STX6	1	180957443	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	19939099	180957443	68293178	11	35633										
USH2A	0	genome.wustl.edu	37	chr1	215848874	215848874	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctccagggtcagtgtgtagaGagtgaaaggatccaggcggc	16	8	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	215848874	215848874	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.12379	p.L4127I	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	215	1	0.46	369	54	12.77	-	-	-	T	215848874	G	T	215848874	3	4	322	1	0	0	0	0	1	0	0	0	17133	942	33	2	3269	2	USH2A	1	215848874	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	34891431	215848874	33401747	12	35634										
OR2T3	0	genome.wustl.edu	37	chr1	248636865	248636865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	acttcttcatcagccagctcGcgctcatggatctcatgtac	7	14	5	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	1	248636865	248636865	G	A	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	missense	c.214	p.A72T	0.266	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	166	0	0	439	61	12.18	-	-	-	A	248636865	G	A	248636865	3	1	322	1	0	0	0	0	1	0	0	0	11096	1087	38	1	216	1	OR2T3	1	248636865	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	32787991	248636865	613756	13	35635										
MSH6	0	genome.wustl.edu	37	chr2	48027198	48027198	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ggttgtgtcttctacctcaaAaaatgccttattgatcagga	8	8	4	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	48027198	48027198	A	C	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.2076	p.K692N	1.000	pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	140	0	0	163	26	13.76	-	-	-	C	48027198	A	C	48027198	3	2	322	1	0	0	0	0	1	0	0	0	9946	11	1	5	2090	5	MSH6	2	48027198	Missense_Mutation	SNP	A	TCGA-AO-A0J4-01A-11W-A050-09		48027198	195172175	14	35636										
XIRP2	0	genome.wustl.edu	37	chr2	168106882	168106882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tgataagtgaagataagagaGaatatgcagttcacattgcc	10	5	1	5			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	168106882	168106882	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.8980	p.E2994K	0.142	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	78	0	0	58	18	23.68	-	-	-	A	168106882	G	A	168106882	3	1	322	1	0	0	0	0	1	0	0	0	17527	943	33	2	9010	2	XIRP2	2	168106882	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	120079684	168106882	75092491	15	35637										
LRP2	0	genome.wustl.edu	37	chr2	170063010	170063010	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tttggaaaggtgggctatggTtttcagggtccaagtgtaag	15	4	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	170063010	170063010	T	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7220	p.N2407S	0.976	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	101	0	0	144	30	17.24	-	-	-	C	170063010	T	C	170063010	3	2	322	1	0	0	0	0	1	0	0	0	9022	1725	60	5	6911	5	LRP2	2	170063010	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	1956128	170063010	73136363	16	35638										
TTN	0	genome.wustl.edu	37	chr2	179621321	179621321	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	atggcacaactgtgtatcttGaacagatgcagctgtgtgga	12	7	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	179621321	179621321	G	C	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.10369	p.Q3457E	0.001	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	125	0	0	154	18	10.4	-	-	-	C	179621321	G	C	179621321	3	2	322	1	0	0	0	0	1	0	0	0	16832	1299	45	2	100374	2	TTN	2	179621321	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	9558311	179621321	63578052	17	35639										
SLC11A1	0	genome.wustl.edu	37	chr2	219255977	219255977	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gccaagatcttccccatgaaCaacgccaccgtggccgtgga	10	15	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	219255977	219255977	C	A	SNP	SLC11A1	ENST00000233202	human	ensembl	69_37n	1	known	missense	c.1011	p.N337K	1.000	pfam_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	pfam_Nat-R-assoc-macro_Nramp,prints_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	-	no_errors	SLC11A1	HGNC	ENSG00000018280	33	0	0	28	8	22.22	-	-	-	A	219255977	C	A	219255977	3	1	322	1	0	0	0	0	1	0	0	0	14469	477	17	4	1049	4	SLC11A1	2	219255977	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	39634656	219255977	23943396	18	35640										
FARSB	0	genome.wustl.edu	37	chr2	223505642	223505643	+	Frame_Shift_Ins	INS	-	-	AT													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tacccgtttatacactggagINScctttatcctaaaataatat							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	223505642	223505643	-	AT	INS	FARSB	ENST00000281828	human	ensembl	69_37n	-1	known	frame_shift_ins	c.278_277	p.A93fs	0.981:0.908	superfamily_DNA-bd_dom_put,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120	146	0	0	68	53	43.8	-	-	-	AT	223505643	-	AT	223505642	7	5	322	1	0	1	1	0	0	0	0	0	5726	971	34	0	1547	0	FARSB	2	223505642	Frame_Shift_Ins	INS	-	TCGA-AO-A0J4-01A-11W-A050-09	4249665	223505642	19693731	19	35641										
UGT1A3	0	genome.wustl.edu	37	chr2	234638186	234638186	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctacataatgaggccctgatCaggcacctgaatgctacttc	8	12	1	3			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	2	234638186	234638186	C	T	SNP	UGT1A3	ENST00000482026	human	ensembl	69_37n	1	known	silent	c.414	p.I138	0.035	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135	304	0	0	201	107	34.74	-	-	-	T	234638186	C	T	234638186	2	4	322	1	0	0	0	0	0	0	0	1	17043	816	29	2		2	UGT1A3	2	234638186	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	11132544	234638186	8561187	20	35642										
IQSEC1	0	genome.wustl.edu	37	chr3	12977153	12977153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gctgttgatgctgtcattgtCaccgtctgagtagtccgact	11	10	3	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	12977153	12977153	C	G	SNP	IQSEC1	ENST00000273221	human	ensembl	69_37n	-1	known	missense	c.1405	p.D469H	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC1	HGNC	ENSG00000144711	32	0	0	11	10	47.62	-	-	-	G	12977153	C	G	12977153	3	3	322	1	0	0	0	0	1	0	0	0	7871	826	29	2	2079	2	IQSEC1	3	12977153	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		12977153	185045277	21	35643										
GADL1	0	genome.wustl.edu	37	chr3	30892434	30892434	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gggacacctcatacgtataaCtagatagatataaaaaacac	6	8	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	30892434	30892434	C	A	SNP	GADL1	ENST00000282538	human	ensembl	69_37n	-1	known	splice_site	c.429-1	e5-1	1.000	-	-	-	no_errors	GADL1	HGNC	ENSG00000144644	278	0	0	151	83	35.47	-	-	-	A	30892434	C	A	30892434	5	1	322	1	0	0	0	0	0	0	1	0	6234	579	20	4	1181	4	GADL1	3	30892434	Splice_Site	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	17915281	30892434	167129996	22	35644										
PPP4R2	0	genome.wustl.edu	37	chr3	73114268	73114268	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	actgtacagaagaggatgaaGaagaggatgaagaggaagaa	15	2	0	8			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	73114268	73114268	G	C	SNP	PPP4R2	ENST00000356692	human	ensembl	69_37n	1	known	missense	c.904	p.E302Q	1.000	NULL	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605	84	0	0	83	13	13.4	-	-	-	C	73114268	G	C	73114268	3	2	322	1	0	0	0	0	1	0	0	0	12481	943	33	2	934	2	PPP4R2	3	73114268	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	42221834	73114268	124908162	23	35645										
DZIP1L	0	genome.wustl.edu	37	chr3	137781705	137781705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agagctctgtggaccagtgcCaaacttctctgggagctttg	12	10	2	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	137781705	137781705	C	G	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	missense	c.2257	p.G753R	0.060	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	86	0	0	86	13	13.13	-	-	-	G	137781705	C	G	137781705	3	3	322	1	0	0	0	0	1	0	0	0	4899	594	21	4	50	4	DZIP1L	3	137781705	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	64667437	137781705	60240725	24	35646										
MFN1	0	genome.wustl.edu	37	chr3	179094864	179094864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	aagagagggaagaccaaattGatagactggactttattcga	11	5	0	4			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	179094864	179094864	G	C	SNP	MFN1	ENST00000263969	human	ensembl	69_37n	1	known	missense	c.1132	p.D378H	1.000	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	68	0	0	47	9	16.07	-	-	-	C	179094864	G	C	179094864	3	2	322	1	0	0	0	0	1	0	0	0	9594	1290	45	2	1170	2	MFN1	3	179094864	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	41313159	179094864	18927566	25	35647										
MCF2L2	0	genome.wustl.edu	37	chr3	182994663	182994664	+	Frame_Shift_Ins	INS	-	-	G													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ggatgtgcagtcttacctgcINSggggggaaaggtctccgagc							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	182994663	182994664	-	G	INS	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1859_1858	p.R620fs	0.001:0.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	51	0	0	26	3	10.34	-	-	-	G	182994664	-	G	182994663	7	5	322	1	0	1	1	0	0	0	0	0	9451	768	27	0	1549	0	MCF2L2	3	182994663	Frame_Shift_Ins	INS	-	TCGA-AO-A0J4-01A-11W-A050-09	3899799	182994663	15027767	26	35648										
LRRC33	0	genome.wustl.edu	37	chr3	196387122	196387122	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	cgagggcggcgctttcgacgGcctggctgagctgaggcacc	17	13	0	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	3	196387122	196387122	G	T	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	missense	c.608	p.G203V	0.005	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	39	0	0	11	14	56	-	-	-	T	196387122	G	T	196387122	3	4	322	1	0	0	0	0	1	0	0	0	9054	1203	42	4	614	4	LRRC33	3	196387122	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	13392459	196387122	1635308	27	35649										
SLIT2	0	genome.wustl.edu	37	chr4	20525795	20525795	+	Frame_Shift_Del	DEL	G	G	-													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	caaaagcaagaaattccgttGttcaggtaatttcttcacgt							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	4	20525795	20525795	G	-	DEL	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	frame_shift_del	c.1433	p.C478fs	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	193	0	0	89	39	29.1	-	-	-	-	20525795	G	-	20525795	7	5	322	1	0	1	0	1	0	0	0	0	14829	1377	48	0	1487	0	SLIT2	4	20525795	Frame_Shift_Del	DEL	G	TCGA-AO-A0J4-01A-11W-A050-09		20525795	170628481	28	35650										
LPHN3	0	genome.wustl.edu	37	chr4	62778466	62778466	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agagagcgctcttgcagagcCtatgtccaggtactttctgc	11	11	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	4	62778466	62778466	C	T	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	silent	c.2103	p.A701	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	180	0	0	216	29	11.84	-	-	-	T	62778466	C	T	62778466	2	4	322	1	0	0	0	0	0	0	0	1	8983	668	24	4		4	LPHN3	4	62778466	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	42252671	62778466	128375810	29	35651										
FAM190A	0	genome.wustl.edu	37	chr4	91230078	91230078	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	aattctcattggaagttacaCagtaccaagagagagaacct	8	8	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	4	91230078	91230078	C	T	SNP	FAM190A	ENST00000333691	human	ensembl	69_37n	1	known	nonsense	c.643	p.Q215*	0.121	NULL	NULL	-	no_errors	FAM190A	HGNC	ENSG00000184305	56	0	0	49	52	51.49	-	-	-	T	91230078	C	T	91230078	4	4	322	1	0	0	0	0	0	1	0	0	5563	479	17	4	645	4	FAM190A	4	91230078	Nonsense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	28451612	91230078	99924198	30	35652										
LIFR	0	genome.wustl.edu	37	chr5	38496650	38496650	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tcctcatctgatgaacacgaTacattgtaggaaagtatttt	7	7	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	5	38496650	38496650	T	C	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	silent	c.1719	p.V573	0.194	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	151	0	0	106	86	44.79	-	-	-	C	38496650	T	C	38496650	2	2	322	1	0	0	0	0	0	0	0	1	8835	1393	49	5		5	LIFR	5	38496650	Silent	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09		38496650	142418610	31	35653										
CKMT2	0	genome.wustl.edu	37	chr5	80553589	80553589	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	catttctcatctggataaatGaggaggatcacaccagggta	10	8	3	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	5	80553589	80553589	G	C	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	missense	c.793	p.E265Q	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	155	0	0	63	16	20.25	-	-	-	C	80553589	G	C	80553589	3	2	322	1	0	0	0	0	1	0	0	0	3481	1291	45	2	815	2	CKMT2	5	80553589	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	42056939	80553589	100361671	32	35654										
PRPF4B	0	genome.wustl.edu	37	chr6	4021684	4021684	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ccgccgcggagacccagtcgCtacgggagcagccagagtaa	14	14	0	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	6	4021684	4021684	C	A	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.25	p.L9I	0.906	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	47	0	0	20	11	35.48	-	-	-	A	4021684	C	A	4021684	3	1	322	1	0	0	0	0	1	0	0	0	12654	796	28	4	27	4	PRPF4B	6	4021684	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		4021684	167093383	33	35655										
GMPR	0	genome.wustl.edu	37	chr6	16279067	16279067	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gtggggtacccccagctgagTgccgtcattgagtgtgccga	15	11	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	6	16279067	16279067	T	C	SNP	GMPR	ENST00000259727	human	ensembl	69_37n	1	known	silent	c.600	p.S200	0.971	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR	HGNC	ENSG00000137198	114	0	0	101	30	22.73	-	-	-	C	16279067	T	C	16279067	2	2	322	1	0	0	0	0	0	0	0	1	6548	1693	59	5		5	GMPR	6	16279067	Silent	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	12257383	16279067	154836000	34	35656										
TNFAIP3	0	genome.wustl.edu	37	chr6	138201278	138201278	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	aacaccattccgtgcctgggGagggaatgcggcacccttgg	14	12	0	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	6	138201278	138201278	G	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	silent	c.1977	p.G659	0.004	pfam_Znf_A20,smart_Znf_A20,pfscan_Znf_A20	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	110	0	0	39	16	29.09	-	-	-	T	138201278	G	T	138201278	2	4	322	1	0	0	0	0	0	0	0	1	16369	1161	41	2		2	TNFAIP3	6	138201278	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	121922211	138201278	32913789	35	35657										
STXBP5	0	genome.wustl.edu	37	chr6	147680336	147680336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	aaacgtttactcgaaagacgGactcgtccccttccccttgt	7	14	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	6	147680336	147680336	G	A	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.2422	p.D808N	0.996	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	116	0	0	88	21	19.27	-	-	-	A	147680336	G	A	147680336	3	1	322	1	0	0	0	0	1	0	0	0	15447	1174	41	2	2512	2	STXBP5	6	147680336	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	9479058	147680336	23434731	36	35658										
TYW1	0	genome.wustl.edu	37	chr7	66474604	66474604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tcttgctgaagcagttacatCcctggatctgcctgtggcca	10	12	2	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	7	66474604	66474604	C	A	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	missense	c.308	p.S103Y	0.237	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874	132	0	0	104	66	38.82	-	-	-	A	66474604	C	A	66474604	3	1	322	1	0	0	0	0	1	0	0	0	16915	855	30	2	322	2	TYW1	7	66474604	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		66474604	92664059	37	35659										
CLIP2	0	genome.wustl.edu	37	chr7	73790923	73790923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gcgccgggatgccgagctgcGtgtgcacgagctggaaaaac	16	11	0	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	7	73790923	73790923	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.2192	p.R731H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	47	0	0	56	14	20	-	-	-	A	73790923	G	A	73790923	3	1	322	1	0	0	0	0	1	0	0	0	3563	1145	40	1	2226	1	CLIP2	7	73790923	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	7316319	73790923	85347740	38	35660										
MLL5	0	genome.wustl.edu	37	chr7	104753730	104753730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agattccaattcacagagcaCaggtgccaccaacatttcaa	6	12	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	7	104753730	104753730	C	A	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.5527	p.Q1843K	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	33	0	0	40	19	32.2	-	-	-	A	104753730	C	A	104753730	3	1	322	1	0	0	0	0	1	0	0	0	9695	479	17	4	5625	4	MLL5	7	104753730	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	30962807	104753730	54384933	39	35661										
CNTNAP2	0	genome.wustl.edu	37	chr7	148112562	148112562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gcaccctggtcttcctgatcCggtacatgttccgccacaag	9	15	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	7	148112562	148112562	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.3850	p.R1284W	1.000	smart_Neurexin-like	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	70	0	0	86	27	23.89	-	-	-	T	148112562	C	T	148112562	3	4	322	1	0	0	0	0	1	0	0	0	3677	643	23	1	3944	1	CNTNAP2	7	148112562	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	43358832	148112562	11026101	40	35662										
RGS22	0	genome.wustl.edu	37	chr8	101075866	101075866	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ttgtttgttctatctcttctGacctctcctttgtagtttga	6	9	4	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	8	101075866	101075866	G	C	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	nonsense	c.1130	p.S377*	0.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	315	0	0	334	96	22.33	-	-	-	C	101075866	G	C	101075866	4	2	322	1	0	0	0	0	0	1	0	0	13389	1294	45	2	2744	2	RGS22	8	101075866	Nonsense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09		101075866	45288156	41	35663										
ASAP1	0	genome.wustl.edu	37	chr8	131140243	131140243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tcctcaataatggcttttgtCaggtcttccaggctgttctc	8	11	4	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	8	131140243	131140243	C	G	SNP	ASAP1	ENST00000524124	human	ensembl	69_37n	-1	novel	missense	c.772	p.D258H	1.000	superfamily_ArfGAP	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ASAP1	HGNC	ENSG00000153317	129	0	0	99	13	11.61	-	-	-	G	131140243	C	G	131140243	3	3	322	1	0	0	0	0	1	0	0	0	1014	813	29	2	2138	2	ASAP1	8	131140243	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	30064377	131140243	15223779	42	35664										
ADCY8	0	genome.wustl.edu	37	chr8	132051962	132051962	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	cccttgagcgggtccatgggGgccgaggccaggctcaagtg	17	12	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	8	132051962	132051962	G	C	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	silent	c.618	p.A206	0.347	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	137	0	0	117	18	13.33	-	-	-	C	132051962	G	C	132051962	2	2	322	1	0	0	0	0	0	0	0	1	300	1219	43	4		4	ADCY8	8	132051962	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	911719	132051962	14312060	43	35665										
PSIP1	0	genome.wustl.edu	37	chr9	15486061	15486061	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gttatgtcaactgctttagtCacatcctaaaaaagaaaaaa	5	7	2	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	9	15486061	15486061	C	G	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	silent	c.399	p.V133	1.000	NULL	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	223	0	0	86	16	15.69	-	-	-	G	15486061	C	G	15486061	2	3	322	1	0	0	0	0	0	0	0	1	12743	813	29	2		2	PSIP1	9	15486061	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		15486061	125727370	44	35666										
LCN10	0	genome.wustl.edu	37	chr9	139634413	139634413	+	Frame_Shift_Del	DEL	A	A	-													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	acagcttaccgtctttcgggAggatgacggcggccttggag							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	9	139634413	139634413	A	-	DEL	LCN10	ENST00000497771	human	ensembl	69_37n	-1	known	frame_shift_del	c.563	p.L188fs	0.065	superfamily_Calycin-like	superfamily_Calycin-like	-	no_errors	LCN10	HGNC	ENSG00000187922	85	0	0	55	19	25.33	-	-	-	-	139634413	A	-	139634413	7	5	322	1	0	1	0	1	0	0	0	0	8735	304	11	0	47	0	LCN10	9	139634413	Frame_Shift_Del	DEL	A	TCGA-AO-A0J4-01A-11W-A050-09	124148352	139634413	1579018	45	35667										
CACNA1B	0	genome.wustl.edu	37	chr9	140938303	140938303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	acgtgatgaggagcggccccCggcctatcgtcccatacagc	12	15	0	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	9	140938303	140938303	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.3367	p.R1123W	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	175	0	0	83	39	31.97	-	-	-	T	140938303	C	T	140938303	3	4	322	1	0	0	0	0	1	0	0	0	2564	643	23	1	3446	1	CACNA1B	9	140938303	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	1303890	140938303	275128	46	35668										
RGR	0	genome.wustl.edu	37	chr10	86014115	86014115	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ttcctcttcaccatgtccttCttcaacttcgccatgcccct	3	18	4	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	10	86014115	86014115	C	T	SNP	RGR	ENST00000359452	human	ensembl	69_37n	1	known	silent	c.558	p.F186	0.993	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RPE_GPCR,prints_7TM_GPCR_Rhodpsn	-	no_errors	RGR	HGNC	ENSG00000148604	179	0	0	85	47	35.61	-	-	-	T	86014115	C	T	86014115	2	4	322	1	0	0	0	0	0	0	0	1	13375	912	32	2		2	RGR	10	86014115	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		86014115	49520632	47	35669										
NKX2-3	0	genome.wustl.edu	37	chr10	101294773	101294773	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctgaagaagtctctagagacGgccggagactgcaaggcggc	15	10	1	4			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	10	101294773	101294773	G	A	SNP	NKX2-3	ENST00000344586	human	ensembl	69_37n	1	known	silent	c.390	p.T130	0.661	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-3	HGNC	ENSG00000119919	10	0	0	2	4	66.67	-	-	-	A	101294773	G	A	101294773	2	1	322	1	0	0	0	0	0	0	0	1	10523	1103	39	1		1	NKX2-3	10	101294773	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	15280658	101294773	34239974	48	35670										
GBF1	0	genome.wustl.edu	37	chr10	104140919	104140919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	agcctcaaggccaaaagcctCtcgcctcagcccacctgact	7	18	3	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	10	104140919	104140919	C	G	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.5206	p.L1736V	0.716	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	85	0	0	42	5	10.64	-	-	-	G	104140919	C	G	104140919	3	3	322	1	0	0	0	0	1	0	0	0	6321	913	32	2	5356	2	GBF1	10	104140919	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	2846146	104140919	31393828	49	35671										
MICAL2	0	genome.wustl.edu	37	chr11	12225820	12225820	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctcatagttgggggaggaccCtgtggcttgcgcactgccat	14	11	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	11	12225820	12225820	C	G	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	silent	c.288	p.P96	0.649	pfam_mOase_FAD-bd,pfam_FAD_bind_dom,prints_Rng_hydrolase-like	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	88	0	0	59	24	28.92	-	-	-	G	12225820	C	G	12225820	2	3	322	1	0	0	0	0	0	0	0	1	9641	668	24	4		4	MICAL2	11	12225820	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		12225820	122780696	50	35672										
P2RY2	0	genome.wustl.edu	37	chr11	72946208	72946208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tgccaccccggctcgccgcaGgctgggcctgcgcagatccg	14	18	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	11	72946208	72946208	G	A	SNP	P2RY2	ENST00000311131	human	ensembl	69_37n	1	known	missense	c.1004	p.R335K	0.787	prints_P2U_purnocptor	pfam_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY2	HGNC	ENSG00000175591	11	0	0	22	17	43.59	-	-	-	A	72946208	G	A	72946208	3	1	322	1	0	0	0	0	1	0	0	0	11425	1000	35	4	1006	4	P2RY2	11	72946208	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	60720388	72946208	62060308	51	35673										
FAT3	0	genome.wustl.edu	37	chr11	92534655	92534655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	atgacaccattataatggaaGggatgcctgttggcaccaaa	10	8	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	11	92534655	92534655	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.8476	p.G2826W	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	57	0	0	87	28	24.35	-	-	-	T	92534655	G	T	92534655	3	4	322	1	0	0	0	0	1	0	0	0	5737	1000	35	4	8510	4	FAT3	11	92534655	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	19588447	92534655	42471861	52	35674										
LAYN	0	genome.wustl.edu	37	chr11	111414758	111414758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ccaaagaagcctgcaggaggGatggaggccagctagtcagc	15	10	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	11	111414758	111414758	G	A	SNP	LAYN	ENST00000375615	human	ensembl	69_37n	1	known	missense	c.220	p.D74N	0.990	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381	117	0	0	41	29	41.43	-	-	-	A	111414758	G	A	111414758	3	1	322	1	0	0	0	0	1	0	0	0	8703	1174	41	2	202	2	LAYN	11	111414758	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	18880103	111414758	23591758	53	35675										
OR6X1	0	genome.wustl.edu	37	chr11	123624318	123624318	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tgaccagtctttgggcaagtCattgcctttcttaaggctcc	9	11	3	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	11	123624318	123624318	C	G	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.909	p.M303I	0.025	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	59	0	0	32	24	42.86	-	-	-	G	123624318	C	G	123624318	3	3	322	1	0	0	0	0	1	0	0	0	11285	826	29	2	31	2	OR6X1	11	123624318	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	12209560	123624318	11382198	54	35676										
FGF6	0	genome.wustl.edu	37	chr12	4553382	4553382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	actcaccacgcctcgctccaCagtggaaatttccagcaggc	8	16	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	12	4553382	4553382	C	T	SNP	FGF6	ENST00000228837	human	ensembl	69_37n	-1	known	missense	c.367	p.V123M	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF6	HGNC	ENSG00000111241	88	0	0	48	22	31.43	-	-	-	T	4553382	C	T	4553382	3	4	322	1	0	0	0	0	1	0	0	0	5902	478	17	4	267	4	FGF6	12	4553382	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		4553382	129298513	55	35677										
VWF	0	genome.wustl.edu	37	chr12	6125930	6125930	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gctcacccacctatattggcTtttgaaatgaaagccttggc	8	11	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	12	6125930	6125930	T	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.5160	p.K1720N	0.061	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	149	0	0	86	15	14.85	-	-	-	A	6125930	T	A	6125930	3	1	322	1	0	0	0	0	1	0	0	0	17343	1606	56	5	3377	5	VWF	12	6125930	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	1572548	6125930	127725965	56	35678										
NCAPD2	0	genome.wustl.edu	37	chr12	6637440	6637440	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	catggttgccactggggatcTggccatccgctttcccaatc	10	14	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	12	6637440	6637440	T	C	SNP	NCAPD2	ENST00000315579	human	ensembl	69_37n	1	known	missense	c.3245	p.L1082P	1.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	205	0	0	167	52	23.74	-	-	-	C	6637440	T	C	6637440	3	2	322	1	0	0	0	0	1	0	0	0	10277	1580	55	5	3339	5	NCAPD2	12	6637440	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	511510	6637440	127214455	57	35679										
GYS2	0	genome.wustl.edu	37	chr12	21716262	21716262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	aaatttcttaacattcaagcCgtttggagtaactacatcta	5	8	3	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	12	21716262	21716262	C	T	SNP	GYS2	ENST00000261195	human	ensembl	69_37n	-1	known	missense	c.841	p.G281S	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713	121	0	0	43	18	29.51	-	-	-	T	21716262	C	T	21716262	3	4	322	1	0	0	0	0	1	0	0	0	6964	652	23	1	1314	1	GYS2	12	21716262	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	15078822	21716262	112135633	58	35680										
PPP1R12A	0	genome.wustl.edu	37	chr12	80214707	80214707	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tggttcaataatcaacgtctCtttgctgttaaaggaaaaca	7	7	3	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	12	80214707	80214707	C	G	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	missense	c.961	p.E321Q	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	182	0	0	110	38	25.68	-	-	-	G	80214707	C	G	80214707	3	3	322	1	0	0	0	0	1	0	0	0	12431	922	32	2	2203	2	PPP1R12A	12	80214707	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	58498445	80214707	53637188	59	35681										
EXD2	0	genome.wustl.edu	37	chr14	69704442	69704442	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	cagcagctggccaaggagttCcaggcccccatcggctctga	12	15	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	14	69704442	69704442	C	G	SNP	EXD2	ENST00000312994	human	ensembl	69_37n	1	known	missense	c.1443	p.F481L	1.000	NULL	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD2	HGNC	ENSG00000081177	50	0	0	42	20	32.26	-	-	-	G	69704442	C	G	69704442	3	3	322	1	0	0	0	0	1	0	0	0	5334	854	30	2	1090	2	EXD2	14	69704442	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		69704442	37645098	60	35682										
PCNX	0	genome.wustl.edu	37	chr14	71514550	71514550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tgctttaatgatcactgttgCtggtttgaagttgctacgat	10	6	1	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	14	71514550	71514550	C	A	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.4187	p.A1396D	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	168	0	0	83	26	23.85	-	-	-	A	71514550	C	A	71514550	3	1	322	1	0	0	0	0	1	0	0	0	11664	797	28	4	4273	4	PCNX	14	71514550	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	1810108	71514550	35834990	61	35683										
MEGF11	0	genome.wustl.edu	37	chr15	66420684	66420684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gttggggtcctcggggttcaGggcaagggtggcttgcagga	20	7	1	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	15	66420684	66420684	G	C	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.58	p.L20V	0.996	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	124	0	0	66	20	23.26	-	-	-	C	66420684	G	C	66420684	3	2	322	1	0	0	0	0	1	0	0	0	9532	991	35	4	3164	4	MEGF11	15	66420684	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09		66420684	36110708	62	35684										
TBC1D2B	0	genome.wustl.edu	37	chr15	78290617	78290617	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tcagctccagccggactttcTccaagtggtaggcgcgtcgg	13	13	2	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	15	78290617	78290617	T	C	SNP	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	missense	c.2777	p.E926G	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	23	0	0	21	7	25	-	-	-	C	78290617	T	C	78290617	3	2	322	1	0	0	0	0	1	0	0	0	15711	1560	54	5	118	5	TBC1D2B	15	78290617	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09	11869933	78290617	24240775	63	35685										
NTRK3	0	genome.wustl.edu	37	chr15	88678459	88678459	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ttgaagagcaggcagccctcGgaaatctctccctcttggta	10	12	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	15	88678459	88678459	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	silent	c.1077	p.S359	0.201	pfam_Ig_I-set,prints_Tyr_kin_neurotrophic_rcpt_3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	195	0	0	109	83	43.23	-	-	-	A	88678459	G	A	88678459	2	1	322	1	0	0	0	0	0	0	0	1	10781	1103	39	1		1	NTRK3	15	88678459	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	10387842	88678459	13852933	64	35686										
DNAH3	0	genome.wustl.edu	37	chr16	20966319	20966319	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gggggctcattggtcattttGattccattctggagaatgct	12	7	3	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	16	20966319	20966319	G	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.10887	p.I3629M	0.998	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	129	0	0	128	26	16.88	-	-	-	C	20966319	G	C	20966319	3	2	322	1	0	0	0	0	1	0	0	0	4639	1280	45	2	1494	2	DNAH3	16	20966319	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09		20966319	69388434	65	35687										
ATMIN	0	genome.wustl.edu	37	chr16	81078489	81078489	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tggatgactttcttctggctGatctggcctggaacacgatg	12	9	3	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	16	81078489	81078489	G	T	SNP	ATMIN	ENST00000299575	human	ensembl	69_37n	1	known	missense	c.2386	p.D796Y	0.972	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454	58	0	0	94	27	22.31	-	-	-	T	81078489	G	T	81078489	3	4	322	1	0	0	0	0	1	0	0	0	1114	1290	45	2	2400	2	ATMIN	16	81078489	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	60112170	81078489	9276264	66	35688										
ACACA	0	genome.wustl.edu	37	chr17	35563786	35563786	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gaagcagcccatcacttcatCaaagatcctaaaaaatacaa	4	11	3	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	17	35563786	35563786	C	G	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.3859	p.D1287H	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	255	0	0	122	97	44.09	-	-	-	G	35563786	C	G	35563786	3	3	322	1	0	0	0	0	1	0	0	0	106	826	29	2	3392	2	ACACA	17	35563786	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		35563786	45631424	67	35689										
PRR11	0	genome.wustl.edu	37	chr17	57262479	57262479	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	taacatcatcctggaacttcAattttcctaacatcagagat	4	10	3	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	17	57262479	57262479	A	T	SNP	PRR11	ENST00000262293	human	ensembl	69_37n	1	known	missense	c.193	p.N65Y	0.001	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489	68	0	0	56	21	27.27	-	-	-	T	57262479	A	T	57262479	3	4	322	1	0	0	0	0	1	0	0	0	12664	130	5	5	199	5	PRR11	17	57262479	Missense_Mutation	SNP	A	TCGA-AO-A0J4-01A-11W-A050-09	21698693	57262479	23932731	68	35690										
NOL4	0	genome.wustl.edu	37	chr18	31803107	31803107	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tcggagccattgaggagctgGacgatccgttcgtatttttt	12	8	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	18	31803107	31803107	G	C	SNP	NOL4	ENST00000261592	human	ensembl	69_37n	-1	known	silent	c.111	p.V37	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746	100	0	0	39	15	27.78	-	-	-	C	31803107	G	C	31803107	2	2	322	1	0	0	0	0	0	0	0	1	10596	1161	41	2		2	NOL4	18	31803107	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09		31803107	46274141	69	35691										
EPS15L1	0	genome.wustl.edu	37	chr19	16528786	16528786	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ggcgtgcctctctccgaaggCgggaccatgtccggcgagag	16	13	1	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	19	16528786	16528786	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.1080	p.P360	0.010	smart_EPS15_homology,pfscan_EPS15_homology	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	59	0	0	36	26	41.94	-	-	-	T	16528786	C	T	16528786	2	4	322	1	0	0	0	0	0	0	0	1	5230	755	27	1		1	EPS15L1	19	16528786	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		16528786	42600197	70	35692										
MEGF8	0	genome.wustl.edu	37	chr19	42863306	42863307	+	Frame_Shift_Ins	INS	-	-	G													0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gggacaccatggtggttcttINSggggggcgctcggaccctga							TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	19	42863306	42863307	-	G	INS	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	frame_shift_ins	c.5400_5401	p.R1802fs	0.034:1.000	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	15	0	0	17	3	15	-	-	-	G	42863307	-	G	42863306	7	5	322	1	0	1	1	0	0	0	0	0	9534	1799	63	0	5317	0	MEGF8	19	42863306	Frame_Shift_Ins	INS	-	TCGA-AO-A0J4-01A-11W-A050-09	26334520	42863306	16265677	71	35693										
PLEKHA4	0	genome.wustl.edu	37	chr19	49355488	49355488	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tccaagcagcgatttacctgGggagaaccaaggtgcagcag	13	10	0	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	19	49355488	49355488	G	C	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	silent	c.1422	p.P474	0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	118	0	0	113	17	13.08	-	-	-	C	49355488	G	C	49355488	2	2	322	1	0	0	0	0	0	0	0	1	12132	1219	43	4		4	PLEKHA4	19	49355488	Silent	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09	6492182	49355488	9773495	72	35694										
RIN2	0	genome.wustl.edu	37	chr20	19951534	19951534	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	atgccatttcaacagccaagTcggaggctcagcttgaagaa	10	10	2	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	20	19951534	19951534	T	G	SNP	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	missense	c.736	p.S246A	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	127	0	0	86	27	23.89	-	-	-	G	19951534	T	G	19951534	3	3	322	1	0	0	0	0	1	0	0	0	13458	1667	58	5	611	5	RIN2	20	19951534	Missense_Mutation	SNP	T	TCGA-AO-A0J4-01A-11W-A050-09		19951534	43073986	73	35695										
GART	0	genome.wustl.edu	37	chr21	34897279	34897279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gtgcctgcatggaacacctcCagtcctagagcttgagcctc	10	14	0	2			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	21	34897279	34897279	C	T	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	silent	c.1095	p.L365	0.976	pfam_PRibGlycinamide_synth_C-dom,superfamily_Rudment_hybrid_motif,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	36	0	0	24	13	35.14	-	-	-	T	34897279	C	T	34897279	2	4	322	1	0	0	0	0	0	0	0	1	6293	581	21	4		4	GART	21	34897279	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		34897279	13232616	74	35696										
SMTN	0	genome.wustl.edu	37	chr22	31484057	31484057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ggaggccctggcatccaagcGtttccgtgccgagcggcagg	16	13	0	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	22	31484057	31484057	G	A	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	missense	c.158	p.R53H	1.000	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	40	0	0	15	11	42.31	-	-	-	A	31484057	G	A	31484057	3	1	322	1	0	0	0	0	1	0	0	0	14903	1145	40	1	164	1	SMTN	22	31484057	Missense_Mutation	SNP	G	TCGA-AO-A0J4-01A-11W-A050-09		31484057	19820509	75	35697										
L3MBTL2	0	genome.wustl.edu	37	chr22	41623175	41623175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ccggctcatctgtgtggccaCggtgaaacgagtggtgcatc	14	11	2	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	22	41623175	41623175	C	T	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	missense	c.1670	p.T557M	0.999	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	11	0	0	13	12	48	-	-	-	T	41623175	C	T	41623175	3	4	322	1	0	0	0	0	1	0	0	0	8646	536	19	1	1724	1	L3MBTL2	22	41623175	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	10139118	41623175	9681391	76	35698										
GRAMD4	0	genome.wustl.edu	37	chr22	47064620	47064620	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gatggctgacatcctggagaAgatcaagaagtaagtcccgc	12	9	1	4			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	22	47064620	47064620	A	T	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	missense	c.965	p.K322M	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	12	0	0	10	5	33.33	-	-	-	T	47064620	A	T	47064620	3	4	322	1	0	0	0	0	1	0	0	0	6803	72	3	5	1007	5	GRAMD4	22	47064620	Missense_Mutation	SNP	A	TCGA-AO-A0J4-01A-11W-A050-09	5441445	47064620	4239946	77	35699										
PPEF1	0	genome.wustl.edu	37	chrX	18748318	18748318	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	gcactgagagctgcgttgatCatccagaactggtaccgagg	13	10	1	3			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	X	18748318	18748318	C	T	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	silent	c.66	p.I22	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_IQ_motif_EF-hand-BS	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	246	0	0	148	71	32.42	-	-	-	T	18748318	C	T	18748318	2	4	322	1	0	0	0	0	0	0	0	1	12380	816	29	2		2	PPEF1	23	18748318	Silent	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09		18748318	136522242	78	35700										
KIF4A	0	genome.wustl.edu	37	chrX	69521793	69521793	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	tgttttggttgccttggataCtgtttcctgtttggaacagg	12	6	0	0			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	X	69521793	69521793	C	G	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.560	p.T187S	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	259	0	0	155	25	13.89	-	-	-	G	69521793	C	G	69521793	3	3	322	1	0	0	0	0	1	0	0	0	8355	565	20	4	578	4	KIF4A	23	69521793	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	50773475	69521793	85748767	79	35701										
HNRNPH2	0	genome.wustl.edu	37	chrX	100668305	100668305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	20	2.20036843960799e-05	3.10088016249154	4.74822274881517	1.51943127962085	0.00576838675046994	0.0972669352062	14	ctgcaggaaaactccagtgaCtatcagtcaaaccttgctta	7	11	2	1			TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7667f49c-449d-44ce-bab8-02a491bb6775	211ddcb7-5fea-46cf-86f5-dc6d5f4cae36	X	100668305	100668305	C	A	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	missense	c.1329	p.D443E	0.995	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	148	0	0	76	58	43.28	-	-	-	A	100668305	C	A	100668305	3	1	322	1	0	0	0	0	1	0	0	0	7318	564	20	4	1331	4	HNRNPH2	23	100668305	Missense_Mutation	SNP	C	TCGA-AO-A0J4-01A-11W-A050-09	31146512	100668305	54602255	80	35702										
PER3	0	genome.wustl.edu	37	chr1	7844971	7844972	+	Frame_Shift_Ins	INS	-	-	G													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	agctcctggccccgggagacINSggggggctaaggacgaggcc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	7844971	7844972	-	G	INS	PER3	ENST00000361923	human	ensembl	69_37n	1	known	frame_shift_ins	c.34_35	p.A14fs	0.000:0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	12	0	0	11	2	15.38	-	-	-	G	7844972	-	G	7844971	7	5	323	1	0	1	1	0	0	0	0	0	11804	527	19	0	36	0	PER3	1	7844971	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09		7844971	241405650	1	35703										
CSMD2	0	genome.wustl.edu	37	chr1	34312489	34312489	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cctgggacctgcctaccttgGtattgggcactgaatccgcg	12	13	0	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	34312489	34312489	G	C	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	nonsense	c.1029	p.Y343*	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	79	0	0	152	21	12.14	-	-	-	C	34312489	G	C	34312489	4	2	323	1	0	0	0	0	0	1	0	0	3977	1256	44	4	9810	4	CSMD2	1	34312489	Nonsense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	26467518	34312489	214938132	2	35704										
LRRC7	0	genome.wustl.edu	37	chr1	70291446	70291446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tttaggtgtacaagaatttcCagaaaacataaagtgctgta	8	5	0	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	70291446	70291446	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.323	p.P108L	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	209	0	0	37	7	15.91	-	-	-	T	70291446	C	T	70291446	3	4	323	1	0	0	0	0	1	0	0	0	9086	594	21	4	333	4	LRRC7	1	70291446	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	35978957	70291446	178959175	3	35705										
LRRC7	0	genome.wustl.edu	37	chr1	70504659	70504659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gatgctcacctacggaagtaGtaaggggccacaacaacaaa	10	10	1	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	70504659	70504659	G	C	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.3038	p.S1013T	0.833	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	61	0	0	56	7	11.11	-	-	-	C	70504659	G	C	70504659	3	2	323	1	0	0	0	0	1	0	0	0	9086	1029	36	4	3112	4	LRRC7	1	70504659	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	213213	70504659	178745962	4	35706										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	12	0	0	55	13	19.12	-	-	-	C	154842243	A	C	154842243	2	2	323	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	84337584	154842243	94408378	5	35707	284	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	12	0	0	54	12	17.91	-	-	-	T	154842244	A	T	154842244	3	4	323	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	1	154842244	94408377	6	35708	284	2								
ARHGEF2	0	genome.wustl.edu	37	chr1	155920838	155920838	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	caggctgccagcttcggttgCccgttcttcacctagccgcc	10	17	2	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	155920838	155920838	C	G	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2488	p.A830P	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	8	0	0	18	5	21.74	-	-	-	G	155920838	C	G	155920838	3	3	323	1	0	0	0	0	1	0	0	0	905	739	26	4	487	4	ARHGEF2	1	155920838	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	1078594	155920838	93329783	7	35709										
CACNA1E	0	genome.wustl.edu	37	chr1	181688962	181688962	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cttttggaatcagtgtcttgCgagccctccggcttctaaga	10	11	3	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	181688962	181688962	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	nonsense	c.1714	p.R572*	0.998	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	229	0	0	112	103	47.91	-	-	-	T	181688962	C	T	181688962	4	4	323	1	0	0	0	0	0	1	0	0	2567	760	27	1	1764	1	CACNA1E	1	181688962	Nonsense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	25768124	181688962	67561659	8	35710										
FAM5C	0	genome.wustl.edu	37	chr1	190067727	190067727	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gagtggctgcctccgaagggAttgacataaacagccaacac	11	11	0	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	190067727	190067727	A	G	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	silent	c.1722	p.N574	0.997	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	102	1	0.97	113	28	19.86	-	-	-	G	190067727	A	G	190067727	2	3	323	1	0	0	0	0	0	0	0	1	5639	330	12	5		5	FAM5C	1	190067727	Silent	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	8378765	190067727	59182894	9	35711										
BIRC6	0	genome.wustl.edu	37	chr2	32702619	32702619	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ttctctccatggactttacaTgtcatgcagatctcttattg	6	10	3	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	32702619	32702619	T	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.7036	p.C2346S	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	179	0	0	135	49	26.63	-	-	-	A	32702619	T	A	32702619	3	1	323	1	0	0	0	0	1	0	0	0	1443	1464	51	5	7174	5	BIRC6	2	32702619	Missense_Mutation	SNP	T	TCGA-AO-A0J5-01A-11W-A050-09		32702619	210496754	10	35712										
PPM1B	0	genome.wustl.edu	37	chr2	44457659	44457659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cgacaacttctggaggagatGctgactagttacaggctagc	12	9	1	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	44457659	44457659	G	A	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	1	known	missense	c.1242	p.M414I	1.000	NULL	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	145	0	0	63	25	28.41	-	-	-	A	44457659	G	A	44457659	3	1	323	1	0	0	0	0	1	0	0	0	12413	1319	46	4	1293	4	PPM1B	2	44457659	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	11755040	44457659	198741714	11	35713										
DYSF	0	genome.wustl.edu	37	chr2	71738993	71738993	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cctggagctgtgcccctgttCccgccccctactcctctgga							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	71738993	71738993	C	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	frame_shift_del	c.399	p.P134fs	0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	52	0	0	29	17	36.96	-	-	-	-	71738993	C	-	71738993	7	5	323	1	0	1	0	1	0	0	0	0	4894	854	30	0	512	0	DYSF	2	71738993	Frame_Shift_Del	DEL	C	TCGA-AO-A0J5-01A-11W-A050-09	27281334	71738993	171460380	12	35714	285	2								
DYSF	0	genome.wustl.edu	37	chr2	71739000	71739001	+	Frame_Shift_Ins	INS	-	-	A													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tgtgcccctgttcccgccccINSctactcctctggagccctcc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	71739000	71739001	-	A	INS	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	frame_shift_ins	c.406_407	p.P136fs	0.001:0.019	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	52	0	0	30	16	34.78	-	-	-	A	71739001	-	A	71739000	7	5	323	1	0	1	1	0	0	0	0	0	4894	623	22	0	519	0	DYSF	2	71739000	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09	7	71739000	171460373	13	35715	285	2								
SEMA4C	0	genome.wustl.edu	37	chr2	97526846	97526847	+	In_Frame_Ins	INS	-	-	GAG													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gcagcaccaggcacacagccINScccagggccaccaccgccag							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	97526846	97526847	-	GAG	INS	SEMA4C	ENST00000305476	human	ensembl	69_37n	-1	known	in_frame_ins	c.2019_2018	p.674in_frame_insS	0.625:0.993	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4C	HGNC	ENSG00000168758	9	0	0	5	3	37.5	-	-	-	GAG	97526847	-	GAG	97526846	7	5	323	1	0	1	1	0	0	0	0	0	14121	610	22	0	486	0	SEMA4C	2	97526846	In_Frame_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09	25787846	97526846	145672527	14	35716										
ITGA4	0	genome.wustl.edu	37	chr2	182339924	182339924	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	aaaaatatattttacataaaGaatgaaaataagctccccac	3	7	0	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	182339924	182339924	G	A	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	silent	c.465	p.K155	0.984	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	228	0	0	64	19	22.89	-	-	-	A	182339924	G	A	182339924	2	1	323	1	0	0	0	0	0	0	0	1	7932	933	33	2		2	ITGA4	2	182339924	Silent	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	84813078	182339924	60859449	15	35717										
DOCK10	0	genome.wustl.edu	37	chr2	225727415	225727415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	aaaaggcatacggtattttcCcaatttgctgcagaattgtc	8	8	0	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	225727415	225727415	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1651	p.G551R	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	284	0	0	76	20	20.83	-	-	-	T	225727415	C	T	225727415	3	4	323	1	0	0	0	0	1	0	0	0	4720	632	22	4	5081	4	DOCK10	2	225727415	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	43387491	225727415	17471958	16	35718										
MLPH	0	genome.wustl.edu	37	chr2	238449564	238449564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gagctggaggacagagtggcAgtgacggcctcagaagtcca	16	9	1	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	238449564	238449564	A	G	SNP	MLPH	ENST00000432475	human	ensembl	69_37n	1	known	missense	c.205	p.S69G	0.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLPH	HGNC	ENSG00000115648	12	0	0	19	4	17.39	-	-	-	G	238449564	A	G	238449564	3	3	323	1	0	0	0	0	1	0	0	0	9704	175	7	5	1448	5	MLPH	2	238449564	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	12722149	238449564	4749809	17	35719										
SETD5	0	genome.wustl.edu	37	chr3	9484993	9484993	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cagaagccttttcacacaggTgcgacacatgattgcagatg	10	10	1	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	9484993	9484993	T	A	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.1079	p.V360E	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	95	0	0	44	16	26.67	-	-	-	A	9484993	T	A	9484993	3	1	323	1	0	0	0	0	1	0	0	0	14222	1710	59	5	1113	5	SETD5	3	9484993	Missense_Mutation	SNP	T	TCGA-AO-A0J5-01A-11W-A050-09		9484993	188537437	18	35720										
MBNL1	0	genome.wustl.edu	37	chr3	152177106	152177106	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gactagccacaagtatgttaCccagatgtagaattttcatc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	152177106	152177106	C	-	DEL	MBNL1	ENST00000282486	human	ensembl	69_37n	1	known	frame_shift_del	c.1157	p.Q387fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601	91	0	0	15	2	11.76	-	-	-	-	152177106	C	-	152177106	7	5	323	1	0	1	0	1	0	0	0	0	9424	507	18	0	1295	0	MBNL1	3	152177106	Frame_Shift_Del	DEL	C	TCGA-AO-A0J5-01A-11W-A050-09	142692113	152177106	45845324	19	35721										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	79	31	27.93	-	-	-	G	178952085	A	G	178952085	3	3	323	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	26774979	178952085	19070345	20	35722										
MUC4	0	genome.wustl.edu	37	chr3	195513420	195513420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gtgacaggaagaggggtggcGtgaccggtggatgctgagga	21	5	0	4			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	195513420	195513420	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5031	p.H1677	0.010	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	31	0	0	71	12	14.46	-	-	-	A	195513420	G	A	195513420	2	1	323	1	0	0	0	0	0	0	0	1	10050	1136	40	1		1	MUC4	3	195513420	Silent	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	16561335	195513420	2509010	21	35723										
ATP10B	0	genome.wustl.edu	37	chr5	160047558	160047558	+	Missense_Mutation	SNP	G	G	T													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ctcaggtgtccgggacactaGtgtgaagctgtaggcatggg							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	5	160047558	160047558	G	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.2212	p.L738I	0.910	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	39	0	0	49	21	30	-	-	-	T	160047558	G	T	160047558	3	4	323	1	0	0	0	0	1	0	0	0	1121	1020	36	4	2221	4	ATP10B	5	160047558	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09		160047558	20867702	22	35724	286	2								
ATP10B	0	genome.wustl.edu	37	chr5	160047559	160047559	+	Silent	SNP	T	T	A													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tcaggtgtccgggacactagTgtgaagctgtaggcatgggc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	5	160047559	160047559	T	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.2211	p.T737	0.001	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	40	0	0	50	21	29.58	-	-	-	A	160047559	T	A	160047559	2	1	323	1	0	0	0	0	0	0	0	1	1121	1683	59	5		5	ATP10B	5	160047559	Silent	SNP	T	TCGA-AO-A0J5-01A-11W-A050-09	1	160047559	20867701	23	35725	286	2								
HIVEP1	0	genome.wustl.edu	37	chr6	12125489	12125489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	aaaaggatgttttttctcaaCctgaaattagtaatgaggct	8	5	1	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	6	12125489	12125489	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.5461	p.P1821S	0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	179	0	0	75	23	23.23	-	-	-	T	12125489	C	T	12125489	3	4	323	1	0	0	0	0	1	0	0	0	7237	507	18	4	5471	4	HIVEP1	6	12125489	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09		12125489	158989578	24	35726										
NUP205	0	genome.wustl.edu	37	chr7	135333164	135333164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	accgctagcttcaggctgatGcaatcaacgcttttggagaa	10	10	2	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	7	135333164	135333164	G	A	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	missense	c.5899	p.A1967T	0.959	NULL	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	197	0	0	71	12	14.46	-	-	-	A	135333164	G	A	135333164	3	1	323	1	0	0	0	0	1	0	0	0	10832	1319	46	4	6069	4	NUP205	7	135333164	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09		135333164	23805499	25	35727										
DOCK5	0	genome.wustl.edu	37	chr8	25261154	25261154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	atgtcttccactctgcggagGttgtccatcacctcagtcac	8	14	5	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	25261154	25261154	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.5007	p.R1669S	0.960	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	135	0	0	63	51	44.74	-	-	-	T	25261154	G	T	25261154	3	4	323	1	0	0	0	0	1	0	0	0	4725	1252	44	4	5197	4	DOCK5	8	25261154	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09		25261154	121102868	26	35728										
OXR1	0	genome.wustl.edu	37	chr8	107726212	107726212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	agcagcagccagagaatgggAggtaaggagaaaaatatgaa	14	4	0	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	107726212	107726212	A	T	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.1958	p.E653V	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	108	0	0	28	11	28.21	-	-	-	T	107726212	A	T	107726212	3	4	323	1	0	0	0	0	1	0	0	0	11407	318	11	5	2196	5	OXR1	8	107726212	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09	82465058	107726212	38637810	27	35729										
SCRIB	0	genome.wustl.edu	37	chr8	144891156	144891156	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ctcctcgatctccctgtcatCcccgggcagcagtgcgtcct							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	144891156	144891156	C	-	DEL	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	frame_shift_del	c.1738	p.D580fs	0.044	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	43	0	0	24	37	59.68	-	-	-	-	144891156	C	-	144891156	7	5	323	1	0	1	0	1	0	0	0	0	14025	855	30	0	3321	0	SCRIB	8	144891156	Frame_Shift_Del	DEL	C	TCGA-AO-A0J5-01A-11W-A050-09	37164944	144891156	1472866	28	35730										
PSIP1	0	genome.wustl.edu	37	chr9	15490113	15490114	+	Frame_Shift_Ins	INS	-	-	A													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gaaatatatcctttggtcctINSaaaaaagcactaaaaaagaa							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	9	15490113	15490114	-	A	INS	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	frame_shift_ins	c.159_158	p.L53fs	1.000:1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	267	0	0	44	27	38.03	-	-	-	A	15490114	-	A	15490113	7	5	323	1	0	1	1	0	0	0	0	0	12743	1519	53	0	1514	0	PSIP1	9	15490113	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09		15490113	125723318	29	35731										
C10orf12	0	genome.wustl.edu	37	chr10	98744677	98744677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	aaggccttcccagtctattgCctcggaaacactgacgaaac	8	13	1	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	10	98744677	98744677	C	T	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.3530	p.A1177V	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	143	0	0	99	15	13.04	-	-	-	T	98744677	C	T	98744677	3	4	323	1	0	0	0	0	1	0	0	0	1599	739	26	4	3532	4	C10orf12	10	98744677	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09		98744677	36790070	30	35732										
SEC31B	0	genome.wustl.edu	37	chr10	102247412	102247412	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gcgatgatgaggacagccttCaggataggcatgaagctgga	15	7	1	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	10	102247412	102247412	C	T	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	silent	c.3501	p.L1167	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	31	0	0	114	15	11.63	-	-	-	T	102247412	C	T	102247412	2	4	323	1	0	0	0	0	0	0	0	1	14087	813	29	2		2	SEC31B	10	102247412	Silent	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	3502735	102247412	33287335	31	35733										
SLC1A2	0	genome.wustl.edu	37	chr11	35327749	35327749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ttgcgttggcctcctcgtccGgcggtggtgcaaccaggact	14	13	0	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	11	35327749	35327749	G	A	SNP	SLC1A2	ENST00000278379	human	ensembl	69_37n	-1	known	missense	c.602	p.P201L	0.020	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A2	HGNC	ENSG00000110436	140	1	0.71	156	85	35.27	-	-	-	A	35327749	G	A	35327749	3	1	323	1	0	0	0	0	1	0	0	0	14521	1116	39	1	1150	1	SLC1A2	11	35327749	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09		35327749	99678767	32	35734										
MAML2	0	genome.wustl.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	169	1	0.59	148	37	19.89	-	-	-	T	95825407	C	T	95825407	2	4	323	1	0	0	0	0	0	0	0	1	9277	796	28	4		4	MAML2	11	95825407	Silent	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	60497658	95825407	39181109	33	35735										
PDE3A	0	genome.wustl.edu	37	chr12	20799761	20799761	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	aatgtgacagatgataaataCggatgtctgtctgggaatat	11	4	2	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	20799761	20799761	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.2442	p.Y814	0.203	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	246	0	0	110	26	19.12	-	-	-	T	20799761	C	T	20799761	2	4	323	1	0	0	0	0	0	0	0	1	11710	547	19	1		1	PDE3A	12	20799761	Silent	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09		20799761	113052134	34	35736										
AACS	0	genome.wustl.edu	37	chr12	125561123	125561123	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gcagaaaacctcctgcggcaCaaagagaatgacagagttgc	11	10	0	4			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	125561123	125561123	C	G	SNP	AACS	ENST00000316519	human	ensembl	69_37n	1	known	missense	c.324	p.H108Q	0.876	pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	151	0	0	118	22	15.71	-	-	-	G	125561123	C	G	125561123	3	3	323	1	0	0	0	0	1	0	0	0	9	477	17	4	334	4	AACS	12	125561123	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	104761362	125561123	8290772	35	35737										
TMEM132D	0	genome.wustl.edu	37	chr12	129559224	129559224	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ccttcctgactcccccattcCtgcgagggttttttgggcct	9	15	0	1			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	129559224	129559224	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2496	p.Q832H	0.001	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	346	2	0.57	209	49	18.99	-	-	-	A	129559224	C	A	129559224	3	1	323	1	0	0	0	0	1	0	0	0	16142	680	24	4	807	4	TMEM132D	12	129559224	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	3998101	129559224	4292671	36	35738										
PIWIL1	0	genome.wustl.edu	37	chr12	130831527	130831527	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	acccggaatggagaggatgtGaggataacgatcactttaac	12	7	1	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	130831527	130831527	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	silent	c.573	p.V191	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	343	0	0	86	28	24.56	-	-	-	A	130831527	G	A	130831527	2	1	323	1	0	0	0	0	0	0	0	1	12031	1277	45	2		2	PIWIL1	12	130831527	Silent	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	1272303	130831527	3020368	37	35739										
IFT88	0	genome.wustl.edu	37	chr13	21170288	21170289	+	Frame_Shift_Ins	INS	-	-	T													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cctgcttttgtctttaatagINScccagaggaaaaaataaagc							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	21170288	21170289	-	T	INS	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	frame_shift_ins	c.427_426	p.E145fs	1.000:0.996	NULL	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	140	0	0	17	2	10.53	-	-	-	T	21170289	-	T	21170288	7	5	323	1	0	1	1	0	0	0	0	0	7620	985	34	0	455	0	IFT88	13	21170288	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09		21170288	93999590	38	35740										
TSC22D1	0	genome.wustl.edu	37	chr13	45148362	45148362	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tggtggtgcccctggaagggGagtttgcactggaggagccg	19	8	0	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	45148362	45148362	G	T	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.1849	p.P617T	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	66	0	0	35	9	20.45	-	-	-	T	45148362	G	T	45148362	3	4	323	1	0	0	0	0	1	0	0	0	16703	1174	41	2	1513	2	TSC22D1	13	45148362	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	23978074	45148362	70021516	39	35741										
TSC22D1	0	genome.wustl.edu	37	chr13	45150041	45150042	+	Frame_Shift_Ins	INS	-	-	G													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cagcgacggaggcggaaaatINScctcggaagatgtggcatta							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	45150041	45150042	-	G	INS	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	frame_shift_ins	c.170_169	p.D57fs	1.000:1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	34	0	0	22	19	46.34	-	-	-	G	45150042	-	G	45150041	7	5	323	1	0	1	1	0	0	0	0	0	16703	1435	50	0	3192	0	TSC22D1	13	45150041	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09	1679	45150041	70019837	40	35742										
MAGEL2	0	genome.wustl.edu	37	chr15	23890432	23890432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ggcaaagggatcctgcagagCatatggcagtgactttgggg	16	7	0	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	15	23890432	23890432	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.649	p.A217T	0.005	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	71	0	0	15	7	31.82	-	-	-	T	23890432	C	T	23890432	3	4	323	1	0	0	0	0	1	0	0	0	9260	710	25	4	1295	4	MAGEL2	15	23890432	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09		23890432	78640960	41	35743										
NTRK3	0	genome.wustl.edu	37	chr15	88576185	88576185	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	atgaccacagtgtcgggcccGgcatccagtgacgagggcgt	15	12	0	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	15	88576185	88576185	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	silent	c.1488	p.A496	0.054	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	108	0	0	152	30	16.48	-	-	-	A	88576185	G	A	88576185	2	1	323	1	0	0	0	0	0	0	0	1	10781	1103	39	1		1	NTRK3	15	88576185	Silent	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	64685753	88576185	13955207	42	35744										
IFT140	0	genome.wustl.edu	37	chr16	1561044	1561045	+	Frame_Shift_Ins	INS	-	-	C													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	cggggacggtgcgtggcagtINSgggagacccagcccccggtg							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	16	1561044	1561045	-	C	INS	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4290_4289	p.L1431fs	0.000:0.968	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	11	0	0	29	15	34.09	-	-	-	C	1561045	-	C	1561044	7	5	323	1	0	1	1	0	0	0	0	0	7610	1683	59	0	102	0	IFT140	16	1561044	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09		1561044	88793709	43	35745										
LRRC37A3	0	genome.wustl.edu	37	chr17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	agattcgacctccctagaagActcagaaggctgaactggct	10	11	1	5			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	15	0	0	12	6	33.33	-	-	-	T	62892271	A	T	62892271	3	4	323	1	0	0	0	0	1	0	0	0	9059	275	10	5	3847	5	LRRC37A3	17	62892271	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09		62892271	18302939	44	35746										
TYK2	0	genome.wustl.edu	37	chr19	10463112	10463113	+	Frame_Shift_Ins	INS	-	-	G													0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gcgggcctggctctcaccgtINSgggggggctctggctggagt							TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	10463112	10463113	-	G	INS	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3316_3315	p.T1105fs	0.001:0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	14	0	0	16	3	15.79	-	-	-	G	10463113	-	G	10463112	7	5	323	1	0	1	1	0	0	0	0	0	16907	1696	59	0	259	0	TYK2	19	10463112	Frame_Shift_Ins	INS	-	TCGA-AO-A0J5-01A-11W-A050-09		10463112	48665871	45	35747										
ZNF69	0	genome.wustl.edu	37	chr19	12016540	12016540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	gactcacactggagagaagcCctatgaatgtcaggaatgtg	12	8	2	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	12016540	12016540	C	T	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	1	known	missense	c.1328	p.P443L	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	108	0	0	101	15	12.93	-	-	-	T	12016540	C	T	12016540	3	4	323	1	0	0	0	0	1	0	0	0	18191	638	22	4		4	ZNF69	19	12016540	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	1553428	12016540	47112443	46	35748										
SLC27A1	0	genome.wustl.edu	37	chr19	17608208	17608208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	tcacggagcgcttcggcgtaCgccaaatcggggagttctac	13	12	2	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	17608208	17608208	C	T	SNP	SLC27A1	ENST00000252595	human	ensembl	69_37n	1	known	missense	c.1141	p.R381C	0.284	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304	36	0	0	29	15	34.09	-	-	-	T	17608208	C	T	17608208	3	4	323	1	0	0	0	0	1	0	0	0	14614	536	19	1	1167	1	SLC27A1	19	17608208	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	5591668	17608208	41520775	47	35749										
COX4I2	0	genome.wustl.edu	37	chr20	30227901	30227901	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ccacgccgaaaaggtggcctGtaagtgtcagggtggggctg	17	9	1	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	20	30227901	30227901	G	A	SNP	COX4I2	ENST00000376075	human	ensembl	69_37n	1	known	splice_site	c.247+1	e2+1	1.000	-	-	-	no_errors	COX4I2	HGNC	ENSG00000131055	35	0	0	25	10	28.57	-	-	-	A	30227901	G	A	30227901	5	1	323	1	0	0	0	0	0	0	1	0	3800	1391	48	4	254	4	COX4I2	20	30227901	Splice_Site	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09		30227901	32797619	48	35750										
ZNF831	0	genome.wustl.edu	37	chr20	57768868	57768868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ctcctagagtgctctctgccCtggcagataatgccttttcc	8	14	1	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	20	57768868	57768868	C	A	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	missense	c.2794	p.L932M	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	30	0	0	15	7	31.82	-	-	-	A	57768868	C	A	57768868	3	1	323	1	0	0	0	0	1	0	0	0	18278	680	24	4	2796	4	ZNF831	20	57768868	Missense_Mutation	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	27540967	57768868	5256652	49	35751										
TOM1	0	genome.wustl.edu	37	chr22	35695926	35695926	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	agcggcggtagcagcaatggActttctcctggggaacccgt	14	11	1	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	22	35695926	35695926	A	G	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	1	known	missense	c.5	p.D2G	1.000	superfamily_ENTH_VHS,pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	25	0	0	32	12	27.27	-	-	-	G	35695926	A	G	35695926	3	3	323	1	0	0	0	0	1	0	0	0	16446	275	10	5	7	5	TOM1	22	35695926	Missense_Mutation	SNP	A	TCGA-AO-A0J5-01A-11W-A050-09		35695926	15608640	50	35752										
CLCN4	0	genome.wustl.edu	37	chrX	10181872	10181872	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ggcatctacgaggcccacatCcacttaaatgggtacccttt	8	13	1	0			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	10181872	10181872	C	T	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	silent	c.1728	p.I576	1.000	superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	107	0	0	57	20	25.97	-	-	-	T	10181872	C	T	10181872	2	4	323	1	0	0	0	0	0	0	0	1	3495	845	30	2		2	CLCN4	23	10181872	Silent	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09		10181872	145088688	51	35753										
HDAC6	0	genome.wustl.edu	37	chrX	48674948	48674948	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	accgtgagagttccaactttGactccatctatatctgcccc	6	14	2	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	48674948	48674948	G	T	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.1741	p.D581Y	0.998	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	110	0	0	86	13	13.13	-	-	-	T	48674948	G	T	48674948	3	4	323	1	0	0	0	0	1	0	0	0	7062	1290	45	2	1769	2	HDAC6	23	48674948	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	38493076	48674948	106595612	52	35754										
MSN	0	genome.wustl.edu	37	chrX	64958834	64958834	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ccttctgtcactggacaggcCcagatggtacaggaagactt	11	11	2	2			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	64958834	64958834	C	T	SNP	MSN	ENST00000360270	human	ensembl	69_37n	1	known	silent	c.1347	p.A449	0.987	pirsf_ERM,pfam_ERM_C	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	499	0	0	594	107	15.24	-	-	-	T	64958834	C	T	64958834	2	4	323	1	0	0	0	0	0	0	0	1	9957	610	22	4		4	MSN	23	64958834	Silent	SNP	C	TCGA-AO-A0J5-01A-11W-A050-09	16283886	64958834	90311726	53	35755										
CXCR3	0	genome.wustl.edu	37	chrX	70836243	70836243	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	3	0.904872247913239	0.947428571428571	0	1.12789115646259	0.142857142857143	0.62934362934363	0	ccgagtaggaggcctctgagGtctcagaccaggatgaatcc	13	11	2	3			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	70836243	70836243	G	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.1220	p.T407N	1.000	prints_Chemokine_CXCR3	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	49	0	0	54	8	12.9	-	-	-	T	70836243	G	T	70836243	3	4	323	1	0	0	0	0	1	0	0	0	4123	1261	44	4	31	4	CXCR3	23	70836243	Missense_Mutation	SNP	G	TCGA-AO-A0J5-01A-11W-A050-09	5877409	70836243	84434317	54	35756										
GJB5	0	genome.wustl.edu	37	chr1	35223621	35223621	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gccatgtgcacaggtcatcaCccccacggtaccacctcttc	7	18	3	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	35223621	35223621	C	A	SNP	GJB5	ENST00000338513	human	ensembl	69_37n	1	known	missense	c.690	p.H230Q	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin311	-	no_errors	GJB5	HGNC	ENSG00000189280	121	0	0	88	30	25.42	-	-	-	A	35223621	C	A	35223621	3	1	324	1	0	0	0	0	1	0	0	0	6463	506	18	4	692	4	GJB5	1	35223621	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		35223621	214027000	1	35757										
HIVEP3	0	genome.wustl.edu	37	chr1	42046159	42046159	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tttccatggtaagttcaaggCtgccagctggtgaaaggaca	12	8	1	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	42046159	42046159	C	A	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.4310	p.S1437I	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	161	0	0	40	43	51.81	-	-	-	A	42046159	C	A	42046159	3	1	324	1	0	0	0	0	1	0	0	0	7239	797	28	4	2934	4	HIVEP3	1	42046159	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	6822538	42046159	207204462	2	35758										
NSUN4	0	genome.wustl.edu	37	chr1	46818635	46818635	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aagagatcagggatggaaatCaagttcgagttacctcatgg	12	6	3	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	46818635	46818635	C	G	SNP	NSUN4	ENST00000474844	human	ensembl	69_37n	1	known	missense	c.688	p.Q230E	0.002	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN4	HGNC	ENSG00000117481	379	0	0	229	85	26.98	-	-	-	G	46818635	C	G	46818635	3	3	324	1	0	0	0	0	1	0	0	0	10753	827	29	2	702	2	NSUN4	1	46818635	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	4772476	46818635	202431986	3	35759										
DIO1	0	genome.wustl.edu	37	chr1	54371907	54371907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	atgcagaaccagagcagccaGctctacgcagcactgcctga	10	14	1	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	54371907	54371907	G	A	SNP	DIO1	ENST00000388876	human	ensembl	69_37n	1	known	silent	c.477	p.Q159	0.095	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO1	HGNC	ENSG00000211452	66	0	0	63	25	28.41	-	-	-	A	54371907	G	A	54371907	2	1	324	1	0	0	0	0	0	0	0	1	4560	962	34	4		4	DIO1	1	54371907	Silent	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	7553272	54371907	194878714	4	35760										
BCL9	0	genome.wustl.edu	37	chr1	147092484	147092487	+	Frame_Shift_Del	DEL	GGGG	GGGG	-													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cctccagttcagcgcggcctGgggcggaagcccttggatat							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	GGGG	GGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	147092484	147092487	GGGG	-	DEL	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	frame_shift_del	c.2523_2526	p.R843fs	1.000:1.000:1.000:0.967	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	209	0	0	158	55	25.35	-	-	-	-	147092487	GGGG	-	147092484	7	5	324	1	0	1	0	1	0	0	0	0	1385	1335	47	0	2541	0	BCL9	1	147092484	Frame_Shift_Del	DEL	GGGG	TCGA-AO-A0J6-01A-11W-A050-09	92720577	147092484	102158137	5	35761	287	2								
BCL9	0	genome.wustl.edu	37	chr1	147092488	147092488	+	Missense_Mutation	SNP	C	C	T													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cagttcagcgcggcctggggCggaagcccttggatatatct							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	147092488	147092488	C	T	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.2527	p.R843W	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	208	0	0	152	58	27.62	-	-	-	T	147092488	C	T	147092488	3	4	324	1	0	0	0	0	1	0	0	0	1385	759	27	1	2545	1	BCL9	1	147092488	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	4	147092488	102158133	6	35762	287	2								
C1orf54	0	genome.wustl.edu	37	chr1	150246528	150246528	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aagaaagactgggagaggatGaatattatcaggtggtctat	13	3	2	4			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	150246528	150246528	G	A	SNP	C1orf54	ENST00000369099	human	ensembl	69_37n	1	known	missense	c.85	p.E29K	0.024	NULL	NULL	-	no_errors	C1orf54	HGNC	ENSG00000118292	163	0	0	106	29	21.48	-	-	-	A	150246528	G	A	150246528	3	1	324	1	0	0	0	0	1	0	0	0	2066	1291	45	2	91	2	C1orf54	1	150246528	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	3154040	150246528	99004093	7	35763										
ZNF687	0	genome.wustl.edu	37	chr1	151259889	151259889	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gctagcctcttgaagctgtcCcctgcaacacctacttctga	7	15	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	151259889	151259889	C	G	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	silent	c.1122	p.S374	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	74	0	0	46	22	32.35	-	-	-	G	151259889	C	G	151259889	2	3	324	1	0	0	0	0	0	0	0	1	18188	610	22	4		4	ZNF687	1	151259889	Silent	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	1013361	151259889	97990732	8	35764										
INTS3	0	genome.wustl.edu	37	chr1	153734075	153734075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tcccctgtttgacaaccctaAgttggataaggagctgcggg	12	10	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	153734075	153734075	A	T	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	missense	c.1439	p.K480M	1.000	pfam_Integrator_3	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	200	0	0	96	35	26.72	-	-	-	T	153734075	A	T	153734075	3	4	324	1	0	0	0	0	1	0	0	0	7833	72	3	5	1493	5	INTS3	1	153734075	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	2474186	153734075	95516546	9	35765										
TAGLN2	0	genome.wustl.edu	37	chr1	159889125	159889125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tcgggctactgccagcccacCcagattcatcagcgtccgct	9	17	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	159889125	159889125	C	G	SNP	TAGLN2	ENST00000368096	human	ensembl	69_37n	-1	known	missense	c.460	p.G154R	1.000	superfamily_CH-domain,prints_SM22_calponin,pfscan_CH-domain	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,prints_SM22_calponin,prints_Transgelin,pfscan_CH-domain,pfscan_Calponin_repeat	-	no_errors	TAGLN2	HGNC	ENSG00000158710	102	0	0	88	19	17.76	-	-	-	G	159889125	C	G	159889125	3	3	324	1	0	0	0	0	1	0	0	0	15631	623	22	4	210	4	TAGLN2	1	159889125	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	6155050	159889125	89361496	10	35766										
TDRD5	0	genome.wustl.edu	37	chr1	179632507	179632507	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ggtgtttttctacccctaaaGatacatgggatgattcttgg	10	7	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	179632507	179632507	G	A	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.2530	p.D844N	0.032	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	238	0	0	137	56	29.02	-	-	-	A	179632507	G	A	179632507	3	1	324	1	0	0	0	0	1	0	0	0	15828	942	33	2	2422	2	TDRD5	1	179632507	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	19743382	179632507	69618114	11	35767										
FAM5C	0	genome.wustl.edu	37	chr1	190068109	190068109	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gtgcgcatgtcaggcaggcaGaggcgtctcccactgtgcag	15	12	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	190068109	190068109	G	A	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1340	p.S447F	0.143	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	58	0	0	33	13	28.26	-	-	-	A	190068109	G	A	190068109	3	1	324	1	0	0	0	0	1	0	0	0	5639	942	33	2	964	2	FAM5C	1	190068109	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	10435602	190068109	59182512	12	35768										
PIK3C2B	0	genome.wustl.edu	37	chr1	204403609	204403609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gggcatggcccaggaagcggCcaaaatcaatgtggaacatg	14	9	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	204403609	204403609	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.3644	p.G1215D	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	177	0	0	79	40	33.61	-	-	-	T	204403609	C	T	204403609	3	4	324	1	0	0	0	0	1	0	0	0	11984	739	26	4	1300	4	PIK3C2B	1	204403609	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	14335500	204403609	44847012	13	35769										
RASSF5	0	genome.wustl.edu	37	chr1	206760274	206760274	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aagtttaggcagaaactggaGgaggccttaagagaatccca	12	7	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	206760274	206760274	G	C	SNP	RASSF5	ENST00000355294	human	ensembl	69_37n	1	known	missense	c.1221	p.E407D	0.990	pfscan_SARAH	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF5	HGNC	ENSG00000136653	351	0	0	74	50	40.32	-	-	-	C	206760274	G	C	206760274	3	2	324	1	0	0	0	0	1	0	0	0	13172	991	35	4	1367	4	RASSF5	1	206760274	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	2356665	206760274	42490347	14	35770										
USH2A	0	genome.wustl.edu	37	chr1	216062079	216062079	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccaagatataatcacagatgTtggagtatcagagaacagct	9	7	2	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	216062079	216062079	T	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.7912	p.T2638P	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	329	0	0	156	88	36.07	-	-	-	G	216062079	T	G	216062079	3	3	324	1	0	0	0	0	1	0	0	0	17133	1725	60	5	7824	5	USH2A	1	216062079	Missense_Mutation	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	9301805	216062079	33188542	15	35771										
OBSCN	0	genome.wustl.edu	37	chr1	228467646	228467646	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tggtacaaggatgacacgccCctgtctccctctgagaagtt	10	12	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	228467646	228467646	C	G	SNP	OBSCN	ENST00000366706	human	ensembl	69_37n	1	novel	missense	c.794	p.P265R	0.004	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OBSCN	HGNC	ENSG00000154358	52	0	0	20	6	23.08	-	-	-	G	228467646	C	G	228467646	3	3	324	1	0	0	0	0	1	0	0	0	10885	610	22	4	7627	4	OBSCN	1	228467646	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	12405567	228467646	20782975	16	35772										
KIAA1383	0	genome.wustl.edu	37	chr1	232942237	232942237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	agcgtgtaaatcccccagcaCacaggagttgtctaaagcat	9	11	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	232942237	232942237	C	G	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	missense	c.1468	p.H490D	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	133	0	0	47	14	22.95	-	-	-	G	232942237	C	G	232942237	3	3	324	1	0	0	0	0	1	0	0	0	8280	478	17	4	1470	4	KIAA1383	1	232942237	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	4474591	232942237	16308384	17	35773										
NID1	0	genome.wustl.edu	37	chr1	236205393	236205393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gtcagcacctccccttctcaGagccttgtaggagaagggcg	12	13	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	1	236205393	236205393	G	C	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.952	p.L318V	0.000	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	71	0	0	40	14	25.93	-	-	-	C	236205393	G	C	236205393	3	2	324	1	0	0	0	0	1	0	0	0	10486	933	33	2	2859	2	NID1	1	236205393	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	3263156	236205393	13045228	18	35774										
RHOB	0	genome.wustl.edu	37	chr2	20647263	20647263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	agaagctggtggtggtgggcGacggcgcgtgtggcaagacg	21	7	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	20647263	20647263	G	T	SNP	RHOB	ENST00000272233	human	ensembl	69_37n	1	known	missense	c.37	p.D13Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOB	HGNC	ENSG00000143878	37	0	0	28	11	28.21	-	-	-	T	20647263	G	T	20647263	3	4	324	1	0	0	0	0	1	0	0	0	13416	1058	37	3	39	3	RHOB	2	20647263	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		20647263	222552110	19	35775										
TET3	0	genome.wustl.edu	37	chr2	74274174	74274174	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cccgcagccttctcattccaCcccccaggcttcttgccccc	5	23	2	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	74274174	74274174	C	A	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	missense	c.725	p.T242N	0.957	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	71	0	0	28	17	37.78	-	-	-	A	74274174	C	A	74274174	3	1	324	1	0	0	0	0	1	0	0	0	15866	507	18	4	727	4	TET3	2	74274174	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	53626911	74274174	168925199	20	35776										
PTPN18	0	genome.wustl.edu	37	chr2	131128528	131128530	+	In_Frame_Del	DEL	CAT	CAT	-													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gccagcccccactaccagaaCatcaaagaggtacagaggct							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	131128528	131128530	CAT	-	DEL	PTPN18	ENST00000175756	human	ensembl	69_37n	1	known	in_frame_del	c.915_917	p.I306in_frame_del	0.996:0.995:1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN18	HGNC	ENSG00000072135	126	0	0	44	27	36.99	-	-	-	-	131128530	CAT	-	131128528	7	5	324	1	0	1	0	1	0	0	0	0	12865	477	17	0	957	0	PTPN18	2	131128528	In_Frame_Del	DEL	CAT	TCGA-AO-A0J6-01A-11W-A050-09	56854354	131128528	112070845	21	35777										
LRP1B	0	genome.wustl.edu	37	chr2	141528484	141528484	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cggttcttttggagataataTcccactgtacacatacaagt	7	9	1	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	141528484	141528484	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.5592	p.G1864	0.987	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	185	0	0	17	21	55.26	-	-	-	C	141528484	T	C	141528484	2	2	324	1	0	0	0	0	0	0	0	1	9021	1422	50	5		5	LRP1B	2	141528484	Silent	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	10399956	141528484	101670889	22	35778										
CHRNA1	0	genome.wustl.edu	37	chr2	175618463	175618463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ttgctcaggtctggctggtcGctttcctgagaaaggaagtg	14	8	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	175618463	175618463	G	A	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	silent	c.621	p.S207	0.323	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	226	0	0	79	58	42.34	-	-	-	A	175618463	G	A	175618463	2	1	324	1	0	0	0	0	0	0	0	1	3410	1078	38	1		1	CHRNA1	2	175618463	Silent	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	34089979	175618463	67580910	23	35779										
TTN	0	genome.wustl.edu	37	chr2	179442477	179442477	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cattctgggacattaacatgGttggctttcatccaagactt	8	9	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	2	179442477	179442477	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60972	p.N20324K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	122	0	0	65	24	26.97	-	-	-	C	179442477	G	C	179442477	3	2	324	1	0	0	0	0	1	0	0	0	16832	1252	44	4	39463	4	TTN	2	179442477	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	3824014	179442477	63756896	24	35780										
NR1D2	0	genome.wustl.edu	37	chr3	24018854	24018854	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ttctaaagttgccagatcttCgatctttaaacaacatgcac	5	10	3	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	3	24018854	24018854	C	T	SNP	NR1D2	ENST00000312521	human	ensembl	69_37n	1	known	nonsense	c.1684	p.R562*	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738	195	0	0	26	51	66.23	-	-	-	T	24018854	C	T	24018854	4	4	324	1	0	0	0	0	0	1	0	0	10689	876	31	1	1714	1	NR1D2	3	24018854	Nonsense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		24018854	174003576	25	35781										
NGLY1	0	genome.wustl.edu	37	chr3	25761640	25761640	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cccacactcaaacttccaggAaatataagcaaaagatgatc	5	11	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	3	25761640	25761640	A	G	SNP	NGLY1	ENST00000280700	human	ensembl	69_37n	-1	known	missense	c.1654	p.S552P	1.000	pfam_Peptide_N_glycanase_PAW_dom,superfamily_Galactose-bd-like,smart_Peptide_N_glycanase_PAW_dom	pfam_PUB_domain,pfam_Transglutaminase-like,pfam_Rad4/PNGase_transGLS-fold,pfam_Peptide_N_glycanase_PAW_dom,superfamily_Galactose-bd-like,smart_PUG-dom,smart_Transglutaminase-like,smart_Peptide_N_glycanase_PAW_dom	-	no_errors	NGLY1	HGNC	ENSG00000151092	241	0	0	118	59	33.33	-	-	-	G	25761640	A	G	25761640	3	3	324	1	0	0	0	0	1	0	0	0	10470	246	9	5	318	5	NGLY1	3	25761640	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	1742786	25761640	172260790	26	35782										
WDR48	0	genome.wustl.edu	37	chr3	39118666	39118666	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cagctgatcctcctcctgcaAtttgggttgcaacaactaag	8	12	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	3	39118666	39118666	A	G	SNP	WDR48	ENST00000302313	human	ensembl	69_37n	1	known	missense	c.934	p.I312V	0.478	superfamily_WD40_repeat_dom	pfam_DUF3337,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR48	HGNC	ENSG00000114742	119	0	0	24	30	55.56	-	-	-	G	39118666	A	G	39118666	3	3	324	1	0	0	0	0	1	0	0	0	17398	101	4	5	968	5	WDR48	3	39118666	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	13357026	39118666	158903764	27	35783										
OR5H15	0	genome.wustl.edu	37	chr3	97887843	97887844	+	Frame_Shift_Ins	INS	-	-	T													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tctctgaatgcaagatacaaINStttttttccattgcaattgg							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	3	97887843	97887844	-	T	INS	OR5H15	ENST00000356526	human	ensembl	69_37n	1	known	frame_shift_ins	c.300_301	p.S102fs	0.003:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412	374	0	0	207	54	20.69	-	-	-	T	97887844	-	T	97887843	7	5	324	1	0	1	1	0	0	0	0	0	11234	98	4	0	302	0	OR5H15	3	97887843	Frame_Shift_Ins	INS	-	TCGA-AO-A0J6-01A-11W-A050-09	58769177	97887843	100134587	28	35784										
FXR1	0	genome.wustl.edu	37	chr3	180675642	180675642	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aaaatggcaaagttattcaaGaaatagtggacaaatctggt	9	4	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	3	180675642	180675642	G	C	SNP	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	missense	c.916	p.E306Q	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	437	0	0	314	68	17.8	-	-	-	C	180675642	G	C	180675642	3	2	324	1	0	0	0	0	1	0	0	0	6164	943	33	2	954	2	FXR1	3	180675642	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	82787799	180675642	17346788	29	35785										
SCARB2	0	genome.wustl.edu	37	chr4	77100835	77100835	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	atgatctccctgaggaagtgCacctgggaccactctatgac	10	12	2	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	4	77100835	77100835	C	T	SNP	SCARB2	ENST00000264896	human	ensembl	69_37n	-1	known	silent	c.447	p.V149	0.000	pfam_CD36	pfam_CD36,superfamily_NA-bd_OB-fold-like,prints_LimpII,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB2	HGNC	ENSG00000138760	96	0	0	21	40	65.57	-	-	-	T	77100835	C	T	77100835	2	4	324	1	0	0	0	0	0	0	0	1	13969	697	25	4		4	SCARB2	4	77100835	Silent	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		77100835	114053441	30	35786										
PLK4	0	genome.wustl.edu	37	chr4	128804612	128804612	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	agctttataactattttgaaGatagcaattatgtgtatctg	7	4	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	4	128804612	128804612	G	C	SNP	PLK4	ENST00000270861	human	ensembl	69_37n	1	known	missense	c.241	p.D81H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	147	0	0	15	7	31.82	-	-	-	C	128804612	G	C	128804612	3	2	324	1	0	0	0	0	1	0	0	0	12172	942	33	2	255	2	PLK4	4	128804612	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	51703777	128804612	62349664	31	35787										
SCLT1	0	genome.wustl.edu	37	chr4	129873937	129873937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aacataccatttgaagggctGaaagttcttctgttaatcga	8	7	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	4	129873937	129873937	G	A	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.1205	p.S402L	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	301	0	0	82	14	14.58	-	-	-	A	129873937	G	A	129873937	3	1	324	1	0	0	0	0	1	0	0	0	13994	1294	45	2	893	2	SCLT1	4	129873937	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	1069325	129873937	61280339	32	35788										
MYO10	0	genome.wustl.edu	37	chr5	16818206	16818206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aggacgccatgtcatccacgCcctcctcgttcgtggggtgc	12	15	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	5	16818206	16818206	C	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.191	p.G64D	0.999	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	156	0	0	47	39	45.35	-	-	-	T	16818206	C	T	16818206	3	4	324	1	0	0	0	0	1	0	0	0	10134	739	26	4	6141	4	MYO10	5	16818206	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		16818206	164097054	33	35789										
RANBP17	0	genome.wustl.edu	37	chr5	170597134	170597134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aatgaaatgttttaatgcagGtatatgctcgtatgtcagaa	9	4	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	5	170597134	170597134	G	T	SNP	RANBP17	ENST00000523189	human	ensembl	69_37n	1	known	missense	c.1711	p.V571L	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	713	1	0.14	113	31	21.53	-	-	-	T	170597134	G	T	170597134	3	4	324	1	0	0	0	0	1	0	0	0	13110	1275	44	4	1769	4	RANBP17	5	170597134	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	153778928	170597134	10318126	34	35790										
PI16	0	genome.wustl.edu	37	chr6	36931628	36931628	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gccctgacaagcctagcgtcGtgtcagggctgaactcgggc	14	13	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	6	36931628	36931628	G	C	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	missense	c.1300	p.V434L	0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	137	0	0	44	19	30.16	-	-	-	C	36931628	G	C	36931628	3	2	324	1	0	0	0	0	1	0	0	0	11943	1145	40	3	1322	3	PI16	6	36931628	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		36931628	134183439	35	35791										
KLHDC3	0	genome.wustl.edu	37	chr6	42986630	42986630	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cctggaaaaagattgaaccgAaggggaaggggccatgtccc	14	9	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	6	42986630	42986630	A	C	SNP	KLHDC3	ENST00000326974	human	ensembl	69_37n	1	known	missense	c.850	p.K284Q	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702	113	0	0	46	12	20.69	-	-	-	C	42986630	A	C	42986630	3	2	324	1	0	0	0	0	1	0	0	0	8410	247	9	5	876	5	KLHDC3	6	42986630	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	6055002	42986630	128128437	36	35792										
COL19A1	0	genome.wustl.edu	37	chr6	70610189	70610189	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ttttgtgaaagtgataaaacCtgtttcaaattgggaagtgc	10	4	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	6	70610189	70610189	C	G	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	silent	c.225	p.T75	0.962	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	205	0	0	25	7	21.88	-	-	-	G	70610189	C	G	70610189	2	3	324	1	0	0	0	0	0	0	0	1	3706	668	24	4		4	COL19A1	6	70610189	Silent	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	27623559	70610189	100504878	37	35793										
LAMA2	0	genome.wustl.edu	37	chr6	129824389	129824389	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	agtggggacacccacaccatGatccccaccaaaatcaatga	7	14	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	6	129824389	129824389	G	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.8511	p.M2837I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	121	0	0	62	51	45.13	-	-	-	C	129824389	G	C	129824389	3	2	324	1	0	0	0	0	1	0	0	0	8660	1290	45	2	8749	2	LAMA2	6	129824389	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	59214200	129824389	41290678	38	35794										
TULP4	0	genome.wustl.edu	37	chr6	158924964	158924964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gatgagctcatgaaccagagCcagggcagcagaaagggctg	15	9	1	4			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	6	158924964	158924964	C	A	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.4269	p.S1423R	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	100	0	0	8	17	68	-	-	-	A	158924964	C	A	158924964	3	1	324	1	0	0	0	0	1	0	0	0	16873	738	26	4	4319	4	TULP4	6	158924964	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	29100575	158924964	12190103	39	35795										
TNRC18	0	genome.wustl.edu	37	chr7	5352742	5352742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	acggcccccggtgccgcagcCcccgtccccgttcttgtcgc	11	21	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	7	5352742	5352742	C	A	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.7780	p.G2594C	0.540	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	13	0	0	29	9	23.68	-	-	-	A	5352742	C	A	5352742	3	1	324	1	0	0	0	0	1	0	0	0	16434	623	22	4	1142	4	TNRC18	7	5352742	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		5352742	153785921	40	35796										
EIF2AK1	0	genome.wustl.edu	37	chr7	6077156	6077156	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	attggccataacataaggacCttgaagtaaaaaaaaatagt	7	5	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	7	6077156	6077156	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	splice_site	c.1232-1	e11-1	1.000	-	-	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	160	0	0	61	26	29.89	-	-	-	T	6077156	C	T	6077156	5	4	324	1	0	0	0	0	0	0	1	0	5031	695	24	4	681	4	EIF2AK1	7	6077156	Splice_Site	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	724414	6077156	153061507	41	35797										
SNX13	0	genome.wustl.edu	37	chr7	17915306	17915306	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tattacctttcacttgatcaTctttctctgttattttctgt	3	9	5	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	7	17915306	17915306	T	A	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.548	p.D183V	1.000	pfam_Phox_assoc,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	767	0	0	326	64	16.41	-	-	-	A	17915306	T	A	17915306	3	1	324	1	0	0	0	0	1	0	0	0	14973	1435	50	5	2409	5	SNX13	7	17915306	Missense_Mutation	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	11838150	17915306	141223357	42	35798										
SLC45A4	0	genome.wustl.edu	37	chr8	142222615	142222615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	acaggatggcacaatctatgCcaaaccctcgcttggagttc	9	12	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	8	142222615	142222615	C	G	SNP	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	missense	c.1982	p.G661A	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	87	0	0	23	12	33.33	-	-	-	G	142222615	C	G	142222615	3	3	324	1	0	0	0	0	1	0	0	0	14732	739	26	4	575	4	SLC45A4	8	142222615	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		142222615	4141407	43	35799										
CNTLN	0	genome.wustl.edu	37	chr9	17409379	17409379	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gtcctacggaagatggaaaaGaccagaaagaaagtgatcca	11	7	0	5			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	9	17409379	17409379	G	C	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.2704	p.D902H	0.945	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	178	0	0	39	87	69.05	-	-	-	C	17409379	G	C	17409379	3	2	324	1	0	0	0	0	1	0	0	0	3669	942	33	2	2796	2	CNTLN	9	17409379	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		17409379	123804052	44	35800										
IFNE	0	genome.wustl.edu	37	chr9	21481513	21481513	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	caaagacttctgaggaagcaGaaagtttttcctgtgtggta	11	6	1	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	9	21481513	21481513	G	C	SNP	IFNE	ENST00000448696	human	ensembl	69_37n	-1	known	missense	c.181	p.L61V	0.004	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNE	HGNC	ENSG00000184995	182	0	0	82	37	31.09	-	-	-	C	21481513	G	C	21481513	3	2	324	1	0	0	0	0	1	0	0	0	7601	933	33	2	449	2	IFNE	9	21481513	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	4072134	21481513	119731918	45	35801										
NR4A3	0	genome.wustl.edu	37	chr9	102590381	102590381	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccaggttccagttatgcggcGcagacatacagctcggaata	11	11	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	9	102590381	102590381	G	A	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	silent	c.90	p.A30	0.419	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	104	0	0	56	29	34.12	-	-	-	A	102590381	G	A	102590381	2	1	324	1	0	0	0	0	0	0	0	1	10707	1074	38	1		1	NR4A3	9	102590381	Silent	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	81108868	102590381	38623050	46	35802										
C9orf43	0	genome.wustl.edu	37	chr9	116191234	116191234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	accatgcggatttccaccacAgtgtaaaaagtaagttacta	7	9	0	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	9	116191234	116191234	A	C	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	missense	c.1162	p.S388R	0.000	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	316	0	0	103	53	33.76	-	-	-	C	116191234	A	C	116191234	3	2	324	1	0	0	0	0	1	0	0	0	2508	188	7	5	1208	5	C9orf43	9	116191234	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	13600853	116191234	25022197	47	35803										
COX15	0	genome.wustl.edu	37	chr10	101483877	101483877	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	caccatataccatcccaacaGaccctagaacccccaagaga	4	17	0	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	10	101483877	101483877	G	C	SNP	COX15	ENST00000016171	human	ensembl	69_37n	-1	known	missense	c.586	p.L196V	1.000	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	COX15	HGNC	ENSG00000014919	243	0	0	125	39	23.64	-	-	-	C	101483877	G	C	101483877	3	2	324	1	0	0	0	0	1	0	0	0	3794	933	33	2	736	2	COX15	10	101483877	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		101483877	34050870	48	35804										
FAM53B	0	genome.wustl.edu	37	chr10	126370497	126370497	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gctgagcctggcaccccttgGcagggctgccctccaaatcg	12	16	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	10	126370497	126370497	G	T	SNP	FAM53B	ENST00000337318	human	ensembl	69_37n	-1	known	nonsense	c.585	p.C195*	0.996	NULL	NULL	-	no_errors	FAM53B	HGNC	ENSG00000189319	46	0	0	19	9	32.14	-	-	-	T	126370497	G	T	126370497	4	4	324	1	0	0	0	0	0	1	0	0	5626	1195	42	4	691	4	FAM53B	10	126370497	Nonsense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	24886620	126370497	9164250	49	35805										
ATHL1	0	genome.wustl.edu	37	chr11	290714	290715	+	Frame_Shift_Ins	INS	-	-	G													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccctcacccctgagcagcccINSggggggccacagcaagaggt							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	290714	290715	-	G	INS	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	frame_shift_ins	c.507_508	p.P171fs	0.850:0.999	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	25	0	0	13	3	18.75	-	-	-	G	290715	-	G	290714	7	5	324	1	0	1	1	0	0	0	0	0	1108	639	23	0	517	0	ATHL1	11	290714	Frame_Shift_Ins	INS	-	TCGA-AO-A0J6-01A-11W-A050-09		290714	134715802	50	35806										
OR52A5	0	genome.wustl.edu	37	chr11	5153708	5153708	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tacatgggtatatggaggctGttttcatatttgattataac	9	4	1	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	5153708	5153708	G	C	SNP	OR52A5	ENST00000307388	human	ensembl	69_37n	-1	known	missense	c.165	p.N55K	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	127	0	0	45	30	40	-	-	-	C	5153708	G	C	5153708	3	2	324	1	0	0	0	0	1	0	0	0	11183	1368	48	4	788	4	OR52A5	11	5153708	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	4862994	5153708	129852808	51	35807										
OR51B4	0	genome.wustl.edu	37	chr11	5322935	5322935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tctggtctagcagcaggacaCccaggactgtgggcattgta	13	10	2	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	5322935	5322935	C	A	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	missense	c.242	p.G81V	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	312	0	0	172	86	33.33	-	-	-	A	5322935	C	A	5322935	3	1	324	1	0	0	0	0	1	0	0	0	11163	507	18	4	693	4	OR51B4	11	5322935	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	169227	5322935	129683581	52	35808										
AHNAK	0	genome.wustl.edu	37	chr11	62288240	62288240	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctttgacatccactttgggaCctttcagatctccctccagt	6	14	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	62288240	62288240	C	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.13649	p.G4550A	0.066	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	225	0	0	47	19	28.79	-	-	-	G	62288240	C	G	62288240	3	3	324	1	0	0	0	0	1	0	0	0	414	507	18	4	4143	4	AHNAK	11	62288240	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	56965305	62288240	72718276	53	35809										
CHRM1	0	genome.wustl.edu	37	chr11	62678402	62678402	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aggaagtagttattgactgtCttgagctccgtgttgacctt	11	7	1	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	62678402	62678402	C	A	SNP	CHRM1	ENST00000306960	human	ensembl	69_37n	-1	known	missense	c.171	p.K57N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Musac_M1_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CHRM1	HGNC	ENSG00000168539	365	1	0.27	138	71	33.97	-	-	-	A	62678402	C	A	62678402	3	1	324	1	0	0	0	0	1	0	0	0	3405	912	32	2	1215	2	CHRM1	11	62678402	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	390162	62678402	72328114	54	35810										
MRPL48	0	genome.wustl.edu	37	chr11	73574260	73574260	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tgcagaaattttcttggaaaTaatccaaagcagtcttcctg	7	8	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	11	73574260	73574260	T	A	SNP	MRPL48	ENST00000310614	human	ensembl	69_37n	1	known	missense	c.518	p.I173K	1.000	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	-	no_errors	MRPL48	HGNC	ENSG00000175581	167	0	0	30	60	65.93	-	-	-	A	73574260	T	A	73574260	3	1	324	1	0	0	0	0	1	0	0	0	9884	1406	49	5	544	5	MRPL48	11	73574260	Missense_Mutation	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	10895858	73574260	61432256	55	35811										
FAM90A1	0	genome.wustl.edu	37	chr12	8376138	8376138	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	atgtggaggagagccttcctCtgcgggtcttgtggcctgca	15	10	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	8376138	8376138	C	A	SNP	FAM90A1	ENST00000307435	human	ensembl	69_37n	-1	known	missense	c.339	p.Q113H	0.000	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847	66	0	0	18	15	45.45	-	-	-	A	8376138	C	A	8376138	3	1	324	1	0	0	0	0	1	0	0	0	5694	912	32	2	1063	2	FAM90A1	12	8376138	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		8376138	125475757	56	35812										
TUBA1B	0	genome.wustl.edu	37	chr12	49523054	49523054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aattcggtccaacacaaggtCaatgatctccttgccaatgg	8	11	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	49523054	49523054	C	G	SNP	TUBA1B	ENST00000336023	human	ensembl	69_37n	-1	known	missense	c.346	p.D116H	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416	169	0	0	75	18	19.35	-	-	-	G	49523054	C	G	49523054	3	3	324	1	0	0	0	0	1	0	0	0	16841	826	29	2	1017	2	TUBA1B	12	49523054	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	41146916	49523054	84328841	57	35813										
SCN8A	0	genome.wustl.edu	37	chr12	52182482	52182482	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctgactctgtttgccaggcaAccttcaaaggctggatggac	11	11	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	52182482	52182482	A	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.4231	p.T1411P	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	126	0	0	22	31	58.49	-	-	-	C	52182482	A	C	52182482	3	2	324	1	0	0	0	0	1	0	0	0	14012	43	2	5	4317	5	SCN8A	12	52182482	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	2659428	52182482	81669413	58	35814										
KRT4	0	genome.wustl.edu	37	chr12	53208015	53208015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tggcccttggcacaagcccaTccttcccgcacccgttgagc	9	18	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	53208015	53208015	T	C	SNP	KRT4	ENST00000293774	human	ensembl	69_37n	-1	known	missense	c.50	p.D17G	0.996	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477	71	0	0	19	17	47.22	-	-	-	C	53208015	T	C	53208015	3	2	324	1	0	0	0	0	1	0	0	0	8530	1435	50	5	1770	5	KRT4	12	53208015	Missense_Mutation	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	1025533	53208015	80643880	59	35815										
NAP1L1	0	genome.wustl.edu	37	chr12	76453633	76453633	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	attcttcttccgtaggttcaTaaattgcattaataatttca	4	7	4	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	76453633	76453633	T	A	SNP	NAP1L1	ENST00000261182	human	ensembl	69_37n	-1	known	missense	c.374	p.Y125F	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109	208	0	0	79	15	15.96	-	-	-	A	76453633	T	A	76453633	3	1	324	1	0	0	0	0	1	0	0	0	10228	1406	49	5	841	5	NAP1L1	12	76453633	Missense_Mutation	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	23245618	76453633	57398262	60	35816										
FBXO21	0	genome.wustl.edu	37	chr12	117604733	117604733	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ggcttaacaggtttcccaccAttctctgtaacaccttcttg	6	13	2	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	117604733	117604733	A	G	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.1163	p.M388T	1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	360	0	0	107	49	31.41	-	-	-	G	117604733	A	G	117604733	3	3	324	1	0	0	0	0	1	0	0	0	5779	217	8	5	743	5	FBXO21	12	117604733	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	41151100	117604733	16247162	61	35817										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123703035	123703035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tcagtttttgtgcccatgatGttatagcattactatttaag	7	6	1	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	123703035	123703035	G	A	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	missense	c.428	p.T143I	1.000	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	288	0	0	62	108	63.53	-	-	-	A	123703035	G	A	123703035	3	1	324	1	0	0	0	0	1	0	0	0	9800	1377	48	4	2743	4	MPHOSPH9	12	123703035	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	6098302	123703035	10148860	62	35818										
SCARB1	0	genome.wustl.edu	37	chr12	125296490	125296490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccccgtgaacaccgtgaagaGcccagagtcggagttgttga	13	11	0	5			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	12	125296490	125296490	G	A	SNP	SCARB1	ENST00000415380	human	ensembl	69_37n	-1	known	missense	c.652	p.L218F	0.134	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	250	0	0	38	62	62	-	-	-	A	125296490	G	A	125296490	3	1	324	1	0	0	0	0	1	0	0	0	13968	971	34	4	1033	4	SCARB1	12	125296490	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	1593455	125296490	8555405	63	35819										
ARL11	0	genome.wustl.edu	37	chr13	50204809	50204809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cgctcagagccagctggaagGactatctggaaggcacagat	13	10	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	13	50204809	50204809	G	A	SNP	ARL11	ENST00000282026	human	ensembl	69_37n	1	known	missense	c.226	p.D76N	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL11	HGNC	ENSG00000152213	38	0	0	10	14	58.33	-	-	-	A	50204809	G	A	50204809	3	1	324	1	0	0	0	0	1	0	0	0	929	1174	41	2	228	2	ARL11	13	50204809	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		50204809	64965069	64	35820										
FRMD6	0	genome.wustl.edu	37	chr14	52186813	52186813	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tcttacatcagtgacaacctGgacctcgacatggaccagct	8	13	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	14	52186813	52186813	G	C	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	silent	c.1065	p.L355	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	72	0	0	23	22	48.89	-	-	-	C	52186813	G	C	52186813	2	2	324	1	0	0	0	0	0	0	0	1	6103	1335	47	4		4	FRMD6	14	52186813	Silent	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		52186813	55162727	65	35821										
SNN	0	genome.wustl.edu	37	chr16	11770041	11770041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctgcggctgcagcgcatcagCcagtcagaggacgaggagag	16	11	2	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	16	11770041	11770041	C	G	SNP	SNN	ENST00000329565	human	ensembl	69_37n	1	known	missense	c.126	p.S42R	1.000	pfam_SNN_linker	pfam_SNN_transmemb,pfam_SNN_linker,pfam_SNN_cytoplasm	-	no_errors	SNN	HGNC	ENSG00000184602	102	0	0	39	19	32.76	-	-	-	G	11770041	C	G	11770041	3	3	324	1	0	0	0	0	1	0	0	0	14938	738	26	4	128	4	SNN	16	11770041	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		11770041	78584712	66	35822										
PRKCB	0	genome.wustl.edu	37	chr16	24183606	24183606	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tccaggaccgcctgtactttGtgatggagtacgtgaatggg	14	8	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	16	24183606	24183606	G	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.1255	p.V419L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	355	2	0.56	195	80	29.09	-	-	-	T	24183606	G	T	24183606	3	4	324	1	0	0	0	0	1	0	0	0	12589	1377	48	4	1297	4	PRKCB	16	24183606	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	12413565	24183606	66171147	67	35823										
TP53	0	genome.wustl.edu	37	chr17	7578218	7578218	+	Frame_Shift_Del	DEL	T	T	-													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	caccacactatgtcgaaaagTgtttctgtcatccaaatact							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	17	7578218	7578218	T	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.631	p.T211fs	0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	402	0	0	93	196	63.02	-	-	-	-	7578218	T	-	7578218	7	5	324	1	0	1	0	1	0	0	0	0	16477	1696	59	0	663	0	TP53	17	7578218	Frame_Shift_Del	DEL	T	TCGA-AO-A0J6-01A-11W-A050-09		7578218	73616992	68	35824										
DNAH9	0	genome.wustl.edu	37	chr17	11520810	11520810	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctggagaatgcagaatttccGgaggtgaagccccagctgcg	14	10	0	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	17	11520810	11520810	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.987	p.P329	0.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	68	0	0	22	36	62.07	-	-	-	A	11520810	G	A	11520810	2	1	324	1	0	0	0	0	0	0	0	1	4643	1103	39	1		1	DNAH9	17	11520810	Silent	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	3942592	11520810	69674400	69	35825										
WIPF2	0	genome.wustl.edu	37	chr17	38412741	38412741	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cctcctcccccgccacccccAcctggtcctcctccacctcc	3	28	0	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	17	38412741	38412741	A	T	SNP	WIPF2	ENST00000323571	human	ensembl	69_37n	1	known	silent	c.30	p.P10	0.038	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF2	HGNC	ENSG00000171475	218	0	0	43	69	61.61	-	-	-	T	38412741	A	T	38412741	2	4	324	1	0	0	0	0	0	0	0	1	17465	146	6	5		5	WIPF2	17	38412741	Silent	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	26891931	38412741	42782469	70	35826										
KRT19	0	genome.wustl.edu	37	chr17	39680125	39680125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gctggtactcctgattctgcCgctcactatcagctcgcaca	8	15	3	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	17	39680125	39680125	C	T	SNP	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	missense	c.1073	p.R358Q	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	53	0	0	19	6	24	-	-	-	T	39680125	C	T	39680125	3	4	324	1	0	0	0	0	1	0	0	0	8509	652	23	1	133	1	KRT19	17	39680125	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	1267384	39680125	41515085	71	35827										
CLUL1	0	genome.wustl.edu	37	chr18	618071	618071	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cagtcactgcgcacccacttGgaaggacaaaactgctatca	8	13	2	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	18	618071	618071	G	C	SNP	CLUL1	ENST00000338387	human	ensembl	69_37n	1	known	missense	c.71	p.W24S	0.982	pfam_Clusterin-like	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	280	0	0	204	83	28.92	-	-	-	C	618071	G	C	618071	3	2	324	1	0	0	0	0	1	0	0	0	3600	1357	47	4	73	4	CLUL1	18	618071	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		618071	77459177	72	35828										
DSEL	0	genome.wustl.edu	37	chr18	65178887	65178887	+	Frame_Shift_Del	DEL	C	C	-													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aaccaggtgtctcctcaaagCcctaatatattcagcatctc							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	18	65178887	65178887	C	-	DEL	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	frame_shift_del	c.2989	p.A997fs	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	64	0	0	11	2	15.38	-	-	-	-	65178887	C	-	65178887	7	5	324	1	0	1	0	1	0	0	0	0	4810	739	26	0	683	0	DSEL	18	65178887	Frame_Shift_Del	DEL	C	TCGA-AO-A0J6-01A-11W-A050-09	64560816	65178887	12898361	73	35829										
MED16	0	genome.wustl.edu	37	chr19	884973	884973	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cgcagggaccagcactccacGatgctgctggtctggctgga	14	13	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	884973	884973	G	C	SNP	MED16	ENST00000325464	human	ensembl	69_37n	-1	known	missense	c.915	p.I305M	0.384	pfam_Mediator_Med16,superfamily_WD40_repeat_dom	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	8	0	0	7	6	46.15	-	-	-	C	884973	G	C	884973	3	2	324	1	0	0	0	0	1	0	0	0	9505	1048	37	3	1762	3	MED16	19	884973	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		884973	58244010	74	35830										
EMR1	0	genome.wustl.edu	37	chr19	6926403	6926403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tgcgccatcatcgcgggcttCctgcactaccttttccttgc	8	16	1	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	6926403	6926403	C	A	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	missense	c.2013	p.F671L	0.083	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	543	0	0	263	173	39.68	-	-	-	A	6926403	C	A	6926403	3	1	324	1	0	0	0	0	1	0	0	0	5141	854	30	2	2075	2	EMR1	19	6926403	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	6041430	6926403	52202580	75	35831										
ACP5	0	genome.wustl.edu	37	chr19	11686061	11686061	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gcccacgccattctcatcttGcaggtactgaggatggagga	12	11	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	11686061	11686061	G	C	SNP	ACP5	ENST00000218758	human	ensembl	69_37n	-1	known	missense	c.742	p.Q248E	0.803	NULL	pfam_Metallo_PEstase_dom	-	no_errors	ACP5	HGNC	ENSG00000102575	33	0	0	8	6	42.86	-	-	-	C	11686061	G	C	11686061	3	2	324	1	0	0	0	0	1	0	0	0	164	1328	46	4	239	4	ACP5	19	11686061	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	4759658	11686061	47442922	76	35832										
STX10	0	genome.wustl.edu	37	chr19	13260582	13260582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tcgaggtcccactcgatgctGcgcaggccattccgcagctc	11	16	0	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	13260582	13260582	G	T	SNP	STX10	ENST00000587318	human	ensembl	69_37n	-1	putative	missense	c.118	p.Q40K	0.967	pfam_Syntaxin-6_N,superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STX10	HGNC	ENSG00000104915	65	0	0	23	24	51.06	-	-	-	T	13260582	G	T	13260582	3	4	324	1	0	0	0	0	1	0	0	0	15427	1306	46	4	611	4	STX10	19	13260582	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	1574521	13260582	45868401	77	35833										
OR10H4	0	genome.wustl.edu	37	chr19	16060433	16060433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tgggtgtgatgctggtgtgtGtcacagccctgataggctgt	16	7	1	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	16060433	16060433	G	A	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	missense	c.616	p.V206I	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	585	0	0	414	184	30.67	-	-	-	A	16060433	G	A	16060433	3	1	324	1	0	0	0	0	1	0	0	0	10981	1377	48	4	618	4	OR10H4	19	16060433	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	2799851	16060433	43068550	78	35834										
UNC13A	0	genome.wustl.edu	37	chr19	17768991	17768991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctgaggcgttgggttgtgacGtagtataatagggcggcggg	19	5	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	17768991	17768991	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.911	p.T304M	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	99	0	0	74	19	20.43	-	-	-	A	17768991	G	A	17768991	3	1	324	1	0	0	0	0	1	0	0	0	17081	1145	40	1	4600	1	UNC13A	19	17768991	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	1708558	17768991	41359992	79	35835										
LTBP4	0	genome.wustl.edu	37	chr19	41133242	41133242	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cagagcccgaggagcctcctGaaggtggaagctatgctggt	15	10	0	2			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	41133242	41133242	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	nonsense	c.4546	p.E1516*	0.043	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	27	0	0	14	6	30	-	-	-	T	41133242	G	T	41133242	4	4	324	1	0	0	0	0	0	1	0	0	9142	1291	45	2	4963	2	LTBP4	19	41133242	Nonsense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	23364251	41133242	17995741	80	35836										
ATP1A3	0	genome.wustl.edu	37	chr19	42482310	42482310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccccaagccacaccttgatgCctgcgctgcgacacttgccc	8	19	0	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	42482310	42482310	C	T	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	missense	c.1838	p.G613D	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	292	0	0	159	89	35.89	-	-	-	T	42482310	C	T	42482310	3	4	324	1	0	0	0	0	1	0	0	0	1134	739	26	4	1286	4	ATP1A3	19	42482310	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	1349068	42482310	16646673	81	35837										
PVRL2	0	genome.wustl.edu	37	chr19	45368575	45368575	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tacccgaggtgcgaggccagCtcgggggcaccgtggagctg	18	12	0	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	45368575	45368575	C	G	SNP	PVRL2	ENST00000252483	human	ensembl	69_37n	1	known	missense	c.136	p.L46V	0.353	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL2	HGNC	ENSG00000130202	67	0	0	37	15	28.85	-	-	-	G	45368575	C	G	45368575	3	3	324	1	0	0	0	0	1	0	0	0	12923	797	28	4	142	4	PVRL2	19	45368575	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	2886265	45368575	13760408	82	35838										
LRRC4B	0	genome.wustl.edu	37	chr19	51021546	51021546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cactgccccctccaacaccaCcactgcccccagggccgccc	6	25	0	0			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	51021546	51021546	C	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.1424	p.G475V	0.001	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	20	0	0	5	10	66.67	-	-	-	A	51021546	C	A	51021546	3	1	324	1	0	0	0	0	1	0	0	0	9073	507	18	4	721	4	LRRC4B	19	51021546	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09	5652971	51021546	8107437	83	35839										
EPS8L1	0	genome.wustl.edu	37	chr19	55598949	55598949	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	atggagaagcaaaagaagaaGgtggaaggcgaggtggaaat	17	2	0	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	55598949	55598949	G	C	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	missense	c.2139	p.K713N	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	750	1	0.13	340	99	22.55	-	-	-	C	55598949	G	C	55598949	3	2	324	1	0	0	0	0	1	0	0	0	5232	991	35	4	2265	4	EPS8L1	19	55598949	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	4577403	55598949	3530034	84	35840										
SUV420H2	0	genome.wustl.edu	37	chr19	55853589	55853590	+	Frame_Shift_Ins	INS	-	-	C													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ccctctcccccagccctgtgINSccccccctgcggcgacagca							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	19	55853589	55853590	-	C	INS	SUV420H2	ENST00000255613	human	ensembl	69_37n	1	known	frame_shift_ins	c.117_118	p.L41fs	0.990:1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247	9	0	0	4	2	33.33	-	-	-	C	55853590	-	C	55853589	7	5	324	1	0	1	1	0	0	0	0	0	15506	1306	46	0	123	0	SUV420H2	19	55853589	Frame_Shift_Ins	INS	-	TCGA-AO-A0J6-01A-11W-A050-09	254640	55853589	3275394	85	35841										
SIRPB1	0	genome.wustl.edu	37	chr20	1600536	1600536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tgtgagtctccccagcagtaGcgtcatcagcaggaaaggac	12	11	3	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	20	1600536	1600536	G	C	SNP	SIRPB1	ENST00000279477	human	ensembl	69_37n	-1	known	missense	c.55	p.L19V	0.008	pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	263	0	0	146	87	37.34	-	-	-	C	1600536	G	C	1600536	3	2	324	1	0	0	0	0	1	0	0	0	14422	962	34	4	2298	4	SIRPB1	20	1600536	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09		1600536	61424984	86	35842										
C20orf26	0	genome.wustl.edu	37	chr20	20232263	20232263	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	tgttttaatgataaagattaTgcactgatgtcactgtgctc	8	6	1	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	20	20232263	20232263	T	C	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	silent	c.2184	p.Y728	0.997	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	140	0	0	50	36	41.86	-	-	-	C	20232263	T	C	20232263	2	2	324	1	0	0	0	0	0	0	0	1	2126	1471	51	5		5	C20orf26	20	20232263	Silent	SNP	T	TCGA-AO-A0J6-01A-11W-A050-09	18631727	20232263	42793257	87	35843										
SLC12A5	0	genome.wustl.edu	37	chr20	44669237	44669237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	gggtcatcaagtctgccttcGacccacccaacttcccgtga	8	16	3	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	20	44669237	44669237	G	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.907	p.D303Y	1.000	prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	124	0	0	55	27	32.93	-	-	-	T	44669237	G	T	44669237	3	4	324	1	0	0	0	0	1	0	0	0	14475	1058	37	3	989	3	SLC12A5	20	44669237	Missense_Mutation	SNP	G	TCGA-AO-A0J6-01A-11W-A050-09	24436974	44669237	18356283	88	35844										
SYNJ1	0	genome.wustl.edu	37	chr21	34099183	34099183	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ggatccaatttgtgatagatCcggaatcctttactgaacgc	9	9	0	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	21	34099183	34099183	C	T	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	silent	c.141	p.R47	0.989	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	193	0	0	35	10	22.22	-	-	-	T	34099183	C	T	34099183	2	4	324	1	0	0	0	0	0	0	0	1	15544	842	30	2		2	SYNJ1	21	34099183	Silent	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		34099183	14030712	89	35845										
SEZ6L	0	genome.wustl.edu	37	chr22	26689012	26689012	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	cccatggccctgatggacaaAggtgagaatgagctgactgg	14	9	0	4			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	22	26689012	26689012	A	T	SNP	SEZ6L	ENST00000248933	human	ensembl	69_37n	1	known	missense	c.735	p.K245N	0.045	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	162	0	0	49	53	51.96	-	-	-	T	26689012	A	T	26689012	3	4	324	1	0	0	0	0	1	0	0	0	14231	69	3	5	741	5	SEZ6L	22	26689012	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09		26689012	24615554	90	35846										
CYP2D6	0	genome.wustl.edu	37	chr22	42525144	42525145	+	Frame_Shift_Ins	INS	-	-	T													0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	aggtggagacggagaagcgcINSctctgctcgcgccacgcggg							TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	22	42525144	42525145	-	T	INS	CYP2D6	ENST00000360608	human	ensembl	69_37n	-1	known	frame_shift_ins	c.396_395	p.R133fs	0.995:1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197	106	0	0	13	26	66.67	-	-	-	T	42525145	-	T	42525144	7	5	324	1	0	1	1	0	0	0	0	0	4200	738	26	0	1125	0	CYP2D6	22	42525144	Frame_Shift_Ins	INS	-	TCGA-AO-A0J6-01A-11W-A050-09	15836132	42525144	8779422	91	35847										
NXF3	0	genome.wustl.edu	37	chrX	102332671	102332671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	agcttgtcattcacgatgcaCagactggaggaaaaatgggc	12	8	2	1			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	X	102332671	102332671	C	T	SNP	NXF3	ENST00000427570	human	ensembl	69_37n	-1	known	missense	c.1073	p.C358Y	0.200	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NXF3	HGNC	ENSG00000147206	105	0	0	26	31	54.39	-	-	-	T	102332671	C	T	102332671	3	4	324	1	0	0	0	0	1	0	0	0	10858	465	17	4	148	4	NXF3	23	102332671	Missense_Mutation	SNP	C	TCGA-AO-A0J6-01A-11W-A050-09		102332671	52937889	92	35848										
ARHGEF6	0	genome.wustl.edu	37	chrX	135764932	135764932	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.141304347826087	13	0.0496883741854384	1.9978354978355	2.46985157699443	1.39708776072412	0.148883622704777	0.650036531273535	6	ctaacctgatagataaagccActcatccgaggacttgcaga	8	11	1	3			TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d21a0c4-03c7-4641-8b4d-7a5877960360	2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d	X	135764932	135764932	A	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.1464	p.S488R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	347	0	0	86	113	56.5	-	-	-	T	135764932	A	T	135764932	3	4	324	1	0	0	0	0	1	0	0	0	912	156	6	5	906	5	ARHGEF6	23	135764932	Missense_Mutation	SNP	A	TCGA-AO-A0J6-01A-11W-A050-09	33432261	135764932	19505628	93	35849										
HRNR	0	genome.wustl.edu	37	chr1	152186708	152186708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	agccagaggactgtcctgagCgagactctcggtgacctaag	13	11	1	4			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	152186708	152186708	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.7397	p.R2466H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	37	0	0	22	3	12	-	-	-	T	152186708	C	T	152186708	3	4	325	1	0	0	0	0	1	0	0	0	7410	768	27	1	1159	1	HRNR	1	152186708	Missense_Mutation	SNP	C	TCGA-AO-A0J7-01A-11W-A050-09		152186708	97063913	1	35850										
NCSTN	0	genome.wustl.edu	37	chr1	160323977	160323977	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	ctgtcatcctcaggaggccaAatcagtcccagcctctccca	7	17	4	0			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	160323977	160323977	A	G	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	missense	c.1249	p.N417D	0.000	pfam_Nicastrin	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	274	0	0	191	135	40.91	-	-	-	G	160323977	A	G	160323977	3	3	325	1	0	0	0	0	1	0	0	0	10313	14	1	5	1291	5	NCSTN	1	160323977	Missense_Mutation	SNP	A	TCGA-AO-A0J7-01A-11W-A050-09	8137269	160323977	88926644	2	35851										
PCNXL2	0	genome.wustl.edu	37	chr1	233134902	233134902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	ttctgtccaaagtgatgggtCcaccccagatgttcttcagc	9	12	3	2			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	233134902	233134902	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.5552	p.G1851E	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	261	0	0	141	99	41.25	-	-	-	T	233134902	C	T	233134902	3	4	325	1	0	0	0	0	1	0	0	0	11665	855	30	2	877	2	PCNXL2	1	233134902	Missense_Mutation	SNP	C	TCGA-AO-A0J7-01A-11W-A050-09	72810925	233134902	16115719	3	35852										
PGBD2	0	genome.wustl.edu	37	chr1	249210906	249210906	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	tccaacaacaacagggaagaGattttcattgcacctcccga	7	12	1	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	249210906	249210906	G	A	SNP	PGBD2	ENST00000329291	human	ensembl	69_37n	1	known	silent	c.123	p.E41	0.748	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220	148	0	0	116	56	32.56	-	-	-	A	249210906	G	A	249210906	2	1	325	1	0	0	0	0	0	0	0	1	11855	933	33	2		2	PGBD2	1	249210906	Silent	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09	16076004	249210906	39715	4	35853										
KCNH7	0	genome.wustl.edu	37	chr2	163302895	163302895	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	agtgcaatatcgtaaacttgTtgatgcgtggtgtctgcagt	12	6	1	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	163302895	163302895	T	C	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	missense	c.1187	p.N396S	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	135	0	0	88	36	29.03	-	-	-	C	163302895	T	C	163302895	3	2	325	1	0	0	0	0	1	0	0	0	8091	1725	60	5	2509	5	KCNH7	2	163302895	Missense_Mutation	SNP	T	TCGA-AO-A0J7-01A-11W-A050-09		163302895	79896478	5	35854										
G6PC2	0	genome.wustl.edu	37	chr2	169757925	169757925	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	tactacacttttctaaatttTatgtccaatgttggagaccc	5	9	1	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	169757925	169757925	T	A	SNP	G6PC2	ENST00000375363	human	ensembl	69_37n	1	known	missense	c.84	p.F28L	1.000	superfamily_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC2	HGNC	ENSG00000152254	421	0	0	116	130	52.85	-	-	-	A	169757925	T	A	169757925	3	1	325	1	0	0	0	0	1	0	0	0	6193	1751	61	5	86	5	G6PC2	2	169757925	Missense_Mutation	SNP	T	TCGA-AO-A0J7-01A-11W-A050-09	6455030	169757925	73441448	6	35855										
SH3BP4	0	genome.wustl.edu	37	chr2	235950945	235950945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	cctggtcagcgaggtcacacGccaggcacccaaccctgccc	10	19	2	0			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	235950945	235950945	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.1532	p.R511H	0.998	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	89	0	0	46	21	31.34	-	-	-	A	235950945	G	A	235950945	3	1	325	1	0	0	0	0	1	0	0	0	14334	1087	38	1	1538	1	SH3BP4	2	235950945	Missense_Mutation	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09	66193020	235950945	7248428	7	35856										
PRSS42	0	genome.wustl.edu	37	chr3	46873464	46873464	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	cttctgtattatcttattacAttcctcatagcacatgatgt	4	9	3	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	46873464	46873464	A	G	SNP	PRSS42	ENST00000429665	human	ensembl	69_37n	-1	known	missense	c.694	p.C232R	0.599	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS42	HGNC	ENSG00000178055	102	0	0	40	39	48.75	-	-	-	G	46873464	A	G	46873464	3	3	325	1	0	0	0	0	1	0	0	0	12708	217	8	5	194	5	PRSS42	3	46873464	Missense_Mutation	SNP	A	TCGA-AO-A0J7-01A-11W-A050-09		46873464	151148966	8	35857										
PLXNA1	0	genome.wustl.edu	37	chr3	126752825	126752825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	agcggctgcggagcaagctgGagcaggtggtggacacgatg	19	8	0	0			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	126752825	126752825	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.5656	p.E1886K	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	12	0	0	7	4	36.36	-	-	-	A	126752825	G	A	126752825	3	1	325	1	0	0	0	0	1	0	0	0	12193	1175	41	2	5778	2	PLXNA1	3	126752825	Missense_Mutation	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09	79879361	126752825	71269605	9	35858										
PIK3CA	0	genome.wustl.edu	37	chr3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	ctctctctgaaatcactgagCaggagaaagattttctatgg	9	8	4	4			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	138	0	0	65	46	41.44	-	-	-	A	178936094	C	A	178936094	3	1	325	1	0	0	0	0	1	0	0	0	11987	711	25	4	1670	4	PIK3CA	3	178936094	Missense_Mutation	SNP	C	TCGA-AO-A0J7-01A-11W-A050-09	52183269	178936094	19086336	10	35859										
MAP3K1	0	genome.wustl.edu	37	chr5	56178637	56178638	+	Frame_Shift_Del	DEL	AT	AT	-													0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	cgtctcaggatgccctccccAtagttcctcagctgcaggtt							TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	5	56178637	56178638	AT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3610_3611	p.I1204fs	0.050:0.201	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	164	0	0	77	54	40.6	-	-	-	-	56178638	AT	-	56178637	7	5	325	1	0	1	0	1	0	0	0	0	9314	217	8	0	3664	0	MAP3K1	5	56178637	Frame_Shift_Del	DEL	AT	TCGA-AO-A0J7-01A-11W-A050-09		56178637	124736623	11	35860										
INTS10	0	genome.wustl.edu	37	chr8	19679949	19679949	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	agtaattttgttttgaaataGgttggccttggggaggcact	13	4	0	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	8	19679949	19679949	G	A	SNP	INTS10	ENST00000397977	human	ensembl	69_37n	1	known	splice_site	c.442-1	e5-1	1.000	-	-	-	no_errors	INTS10	HGNC	ENSG00000104613	182	0	0	76	41	35.04	-	-	-	A	19679949	G	A	19679949	5	1	325	1	0	0	0	0	0	0	1	0	7830	1014	35	4	459	4	INTS10	8	19679949	Splice_Site	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09		19679949	126684073	12	35861										
ALOX5	0	genome.wustl.edu	37	chr10	45878089	45878089	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	gagttcccctgctaccgctgGatcaccggcgatgtcgaggt	13	13	1	0			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	10	45878089	45878089	G	A	SNP	ALOX5	ENST00000374391	human	ensembl	69_37n	1	known	nonsense	c.309	p.W103*	1.000	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX5	HGNC	ENSG00000012779	94	0	0	37	20	35.09	-	-	-	A	45878089	G	A	45878089	4	1	325	1	0	0	0	0	0	1	0	0	540	1183	41	2	315	2	ALOX5	10	45878089	Nonsense_Mutation	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09		45878089	89656658	13	35862										
STOX1	0	genome.wustl.edu	37	chr10	70644128	70644128	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	atagttactcctcagacttaCttcattacaaatacaaccac	2	12	2	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	10	70644128	70644128	C	T	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	silent	c.576	p.Y192	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	44	0	0	26	14	35	-	-	-	T	70644128	C	T	70644128	2	4	325	1	0	0	0	0	0	0	0	1	15410	576	20	4		4	STOX1	10	70644128	Silent	SNP	C	TCGA-AO-A0J7-01A-11W-A050-09	24766039	70644128	64890619	14	35863										
BRSK2	0	genome.wustl.edu	37	chr11	1466879	1466880	+	Frame_Shift_Ins	INS	-	-	C													0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	gccaggaggatgaggacctgINScccccccggaacgagatagg							TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	11	1466879	1466880	-	C	INS	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	frame_shift_ins	c.1194_1195	p.R400fs	0.972:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	24	0	0	16	3	15.79	-	-	-	C	1466880	-	C	1466879	7	5	325	1	0	1	1	0	0	0	0	0	1532	1306	46	0	1098	0	BRSK2	11	1466879	Frame_Shift_Ins	INS	-	TCGA-AO-A0J7-01A-11W-A050-09		1466879	133539637	15	35864										
PGR	0	genome.wustl.edu	37	chr11	100996740	100996741	+	Frame_Shift_Ins	INS	-	-	C													0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	aggggaaaggagcctaccttINSccattgccctcttaaagaag							TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	11	100996740	100996741	-	C	INS	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1787_1786	p.E596fs	1.000:1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	159	0	0	12	21	63.64	-	-	-	C	100996741	-	C	100996740	7	5	325	1	0	1	1	0	0	0	0	0	11879	1783	62	0	1042	0	PGR	11	100996740	Frame_Shift_Ins	INS	-	TCGA-AO-A0J7-01A-11W-A050-09	99529861	100996740	34009776	16	35865										
LRP1	0	genome.wustl.edu	37	chr12	57597181	57597182	+	Frame_Shift_Ins	INS	-	-	C													0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	atgcccacagaaagactgcaINSccccccgctgtgacatggac							TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	12	57597181	57597182	-	C	INS	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_ins	c.10828_10829	p.R3612fs	0.495:0.403	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	28	0	0	17	2	10.53	-	-	-	C	57597182	-	C	57597181	7	5	325	1	0	1	1	0	0	0	0	0	9017	159	6	0	11106	0	LRP1	12	57597181	Frame_Shift_Ins	INS	-	TCGA-AO-A0J7-01A-11W-A050-09		57597181	76254714	17	35866										
CPAMD8	0	genome.wustl.edu	37	chr19	17032750	17032750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	gcgtcccgctccccaaacgcGctgtaggagccatcctggcg	12	17	0	0			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	19	17032750	17032750	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.3767	p.A1256V	0.986	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	45	0	0	46	39	45.88	-	-	-	A	17032750	G	A	17032750	3	1	325	1	0	0	0	0	1	0	0	0	3825	1078	38	1	2127	1	CPAMD8	19	17032750	Missense_Mutation	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09		17032750	42096233	18	35867										
FCGBP	0	genome.wustl.edu	37	chr19	40383820	40383820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	tgtgctgacgggctggcagcCgtgctggccggatggcagga	19	10	0	1			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	19	40383820	40383820	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.9790	p.G3264S	0.796	smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	21	0	0	42	13	23.64	-	-	-	T	40383820	C	T	40383820	3	4	325	1	0	0	0	0	1	0	0	0	5824	652	23	1	6491	1	FCGBP	19	40383820	Missense_Mutation	SNP	C	TCGA-AO-A0J7-01A-11W-A050-09	23351070	40383820	18745163	19	35868										
TRMT2B	0	genome.wustl.edu	37	chrX	100275554	100275554	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	2	0.79133532817198	1.38585858585859	NA	1.38585858585859	0.333333333333333	0.930327025915261	0	aaggacccgagatgtatgctGagccagagagaggccaatca	13	9	1	4			TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	X	100275554	100275554	G	A	SNP	TRMT2B	ENST00000372935	human	ensembl	69_37n	-1	known	nonsense	c.1090	p.Q364*	0.184	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917	200	1	0.5	130	99	43.23	-	-	-	A	100275554	G	A	100275554	4	1	325	1	0	0	0	0	0	1	0	0	16662	1299	45	2	440	2	TRMT2B	23	100275554	Nonsense_Mutation	SNP	G	TCGA-AO-A0J7-01A-11W-A050-09		100275554	54995006	20	35869										
FAAH	0	genome.wustl.edu	37	chr1	46871162	46871162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	cttcgtgcacaccaatgttcCacagtccatgttcaggttgg	9	12	1	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	1	46871162	46871162	C	T	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	missense	c.563	p.P188L	0.999	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	38	0	0	28	20	41.67	-	-	-	T	46871162	C	T	46871162	3	4	326	1	0	0	0	0	1	0	0	0	5393	594	21	4	577	4	FAAH	1	46871162	Missense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		46871162	202379459	1	35870										
FAAH	0	genome.wustl.edu	37	chr1	46874199	46874199	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	aactataccatgccctccccGgccatgaggcgggccgtgct	11	16	0	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	1	46874199	46874199	G	C	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	silent	c.1020	p.P340	0.011	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	74	0	0	42	32	43.24	-	-	-	C	46874199	G	C	46874199	2	2	326	1	0	0	0	0	0	0	0	1	5393	1103	39	3		3	FAAH	1	46874199	Silent	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09	3037	46874199	202376422	2	35871										
PSEN2	0	genome.wustl.edu	37	chr1	227077759	227077759	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	tcgtggctgtgctgtgtcccAaagggcctctgagaatgctg	14	10	1	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	1	227077759	227077759	A	G	SNP	PSEN2	ENST00000391872	human	ensembl	69_37n	1	known	missense	c.910	p.K304E	1.000	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Peptidase_A22A	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	136	0	0	271	74	21.08	-	-	-	G	227077759	A	G	227077759	3	3	326	1	0	0	0	0	1	0	0	0	12731	131	5	5	833	5	PSEN2	1	227077759	Missense_Mutation	SNP	A	TCGA-AO-A0J8-01A-21D-A045-09	180203560	227077759	22172862	3	35872										
SRD5A2	0	genome.wustl.edu	37	chr2	31754431	31754432	+	RNA	INS	-	-	C													0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	aagtgagaaaaatgcaaatgINScaagtgctgggagggaccaa							TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	2	31754431	31754432	-	C	INS	SRD5A2	ENST00000233139	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.991:0.955	-	-	-	no_errors	SRD5A2	HGNC	ENSG00000049319	232	0	0	60	36	37.5	-	-	-	C	31754432	-	C	31754431	6	5	326	0	1	1	1	0	0	0	0	0	15230	1319	46	0		0	SRD5A2	2	31754431	RNA	INS	-	TCGA-AO-A0J8-01A-21D-A045-09		31754431	211444942	4	35873										
ADH1A	0	genome.wustl.edu	37	chr4	100205585	100205585	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	attgactgcagacccataacCagttgaaaatccacagccaa	6	12	0	3			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	4	100205585	100205585	C	G	SNP	ADH1A	ENST00000209668	human	ensembl	69_37n	-1	known	missense	c.538	p.G180R	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758	224	0	0	120	59	32.96	-	-	-	G	100205585	C	G	100205585	3	3	326	1	0	0	0	0	1	0	0	0	307	594	21	4	609	4	ADH1A	4	100205585	Missense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		100205585	90948691	5	35874										
PDZD2	0	genome.wustl.edu	37	chr5	31799549	31799549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	acctgatcacagcccccccgAaatggagatctgtactgtgt	9	13	2	2			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	5	31799549	31799549	A	G	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.194	p.E65G	0.824	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	126	0	0	58	33	36.26	-	-	-	G	31799549	A	G	31799549	3	3	326	1	0	0	0	0	1	0	0	0	11774	246	9	5	196	5	PDZD2	5	31799549	Missense_Mutation	SNP	A	TCGA-AO-A0J8-01A-21D-A045-09		31799549	149115711	6	35875										
NDFIP1	0	genome.wustl.edu	37	chr5	141515313	141515313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	aggatgaggattttgtgggtCgggatgattttgatgatgct	16	2	0	4			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	5	141515313	141515313	C	T	SNP	NDFIP1	ENST00000253814	human	ensembl	69_37n	1	known	missense	c.301	p.R101W	0.988	pfam_NEDD4/BSD2	pfam_NEDD4/BSD2	-	no_errors	NDFIP1	HGNC	ENSG00000131507	467	1	0.21	423	229	35.12	-	-	-	T	141515313	C	T	141515313	3	4	326	1	0	0	0	0	1	0	0	0	10317	875	31	1	315	1	NDFIP1	5	141515313	Missense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09	109715764	141515313	39399947	7	35876										
NR2E1	0	genome.wustl.edu	37	chr6	108492770	108492770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	ttttttcaaacggagcatccGaaggaataggacctatgtct	9	8	2	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	6	108492770	108492770	G	A	SNP	NR2E1	ENST00000368986	human	ensembl	69_37n	1	known	missense	c.134	p.R45Q	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333	84	0	0	33	42	56	-	-	-	A	108492770	G	A	108492770	3	1	326	1	0	0	0	0	1	0	0	0	10698	1058	37	1	140	1	NR2E1	6	108492770	Missense_Mutation	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09		108492770	62622297	8	35877										
WBSCR17	0	genome.wustl.edu	37	chr7	70597969	70597969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	acagcgccagccccatccagGatgcggtcctgaagcgcctg	12	16	0	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	7	70597969	70597969	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.181	p.D61Y	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	11	0	0	15	10	40	-	-	-	T	70597969	G	T	70597969	3	4	326	1	0	0	0	0	1	0	0	0	17361	1174	41	2	183	2	WBSCR17	7	70597969	Missense_Mutation	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09		70597969	88540694	9	35878										
POTEA	0	genome.wustl.edu	37	chr8	43197031	43197031	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	tcttttttcaggcctgaaaaGaaatctaatgaaaagaacaa	6	6	3	4			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	8	43197031	43197031	G	T	SNP	POTEA	ENST00000522175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.522	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	121	0	0	72	27	27.27	-	-	-	T	43197031	G	T	43197031	1	4	326	0	1	0	0	0	0	0	0	0	12335	933	33	2		2	POTEA	8	43197031	RNA	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09		43197031	103166991	10	35879										
TPD52	0	genome.wustl.edu	37	chr8	80992644	80992644	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	actcctgcatcaaaatcaaaCggggactggtagtcctcata	8	11	3	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	8	80992644	80992644	C	T	SNP	TPD52	ENST00000537855	human	ensembl	69_37n	-1	known	silent	c.45	p.P15	0.059	NULL	pfam_TPD52,pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold-like	-	no_errors	TPD52	HGNC	ENSG00000076554	121	0	0	96	66	40.74	-	-	-	T	80992644	C	T	80992644	2	4	326	1	0	0	0	0	0	0	0	1	16493	523	19	1		1	TPD52	8	80992644	Silent	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09	37795613	80992644	65371378	11	35880										
MMS19	0	genome.wustl.edu	37	chr10	99223754	99223754	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	acagcaataacgtcactggaTtgtgcaaccatattccctgt	7	11	1	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	10	99223754	99223754	T	A	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	missense	c.1773	p.Q591H	0.000	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	134	0	0	33	34	50.75	-	-	-	A	99223754	T	A	99223754	3	1	326	1	0	0	0	0	1	0	0	0	9744	1490	52	5	1371	5	MMS19	10	99223754	Missense_Mutation	SNP	T	TCGA-AO-A0J8-01A-21D-A045-09		99223754	36310993	12	35881										
PNLIPRP1	0	genome.wustl.edu	37	chr10	118354350	118354350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	tgcgagtggtgggcgcccagGtggcccagatgctcgacatc	16	12	0	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	10	118354350	118354350	G	A	SNP	PNLIPRP1	ENST00000358834	human	ensembl	69_37n	1	known	missense	c.439	p.V147M	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021	94	0	0	41	20	32.79	-	-	-	A	118354350	G	A	118354350	3	1	326	1	0	0	0	0	1	0	0	0	12224	1261	44	4	453	4	PNLIPRP1	10	118354350	Missense_Mutation	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09	19130596	118354350	17180397	13	35882										
MBD6	0	genome.wustl.edu	37	chr12	57922155	57922155	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	aggccaggccagcccggggcCgaaagcctggcagccggcgg	18	15	0	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	12	57922155	57922155	C	T	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	nonsense	c.2632	p.R878*	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987	24	0	0	6	5	45.45	-	-	-	T	57922155	C	T	57922155	4	4	326	1	0	0	0	0	0	1	0	0	9419	644	23	1	2662	1	MBD6	12	57922155	Nonsense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		57922155	75929740	14	35883										
SLC41A2	0	genome.wustl.edu	37	chr12	105322236	105322236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	taaacgtaaagtccaatctaCaaaacctcctccactacttg	3	13	1	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	12	105322236	105322236	C	T	SNP	SLC41A2	ENST00000258538	human	ensembl	69_37n	-1	known	missense	c.70	p.V24I	1.000	NULL	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A2	HGNC	ENSG00000136052	111	0	0	47	35	42.68	-	-	-	T	105322236	C	T	105322236	3	4	326	1	0	0	0	0	1	0	0	0	14719	478	17	4	1691	4	SLC41A2	12	105322236	Missense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09	47400081	105322236	28529659	15	35884										
ATP6V0A2	0	genome.wustl.edu	37	chr12	124229203	124229203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	ctgatggggctgttctcagtGtacactggcctcatctacaa	10	11	3	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	12	124229203	124229203	G	A	SNP	ATP6V0A2	ENST00000330342	human	ensembl	69_37n	1	known	silent	c.1386	p.V462	0.999	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344	80	0	0	118	54	31.4	-	-	-	A	124229203	G	A	124229203	2	1	326	1	0	0	0	0	0	0	0	1	1173	1364	48	4		4	ATP6V0A2	12	124229203	Silent	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09	18906967	124229203	9622692	16	35885										
TSC22D1	0	genome.wustl.edu	37	chr13	45148149	45148149	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	cagctggataccctgtggctGagccacaggaatcactgttg	12	11	1	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	13	45148149	45148149	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	nonsense	c.2062	p.Q688*	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	18	0	0	20	8	28.57	-	-	-	A	45148149	G	A	45148149	4	1	326	1	0	0	0	0	0	1	0	0	16703	1299	45	2	1300	2	TSC22D1	13	45148149	Nonsense_Mutation	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09		45148149	70021729	17	35886										
DACT1	0	genome.wustl.edu	37	chr14	59113588	59113588	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	gaggacgagcagagcaattaCaccaccaactgcttcgggga	12	11	0	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	14	59113588	59113588	C	T	SNP	DACT1	ENST00000335867	human	ensembl	69_37n	1	known	silent	c.2247	p.Y749	1.000	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617	220	0	0	50	24	32.43	-	-	-	T	59113588	C	T	59113588	2	4	326	1	0	0	0	0	0	0	0	1	4254	489	17	4		4	DACT1	14	59113588	Silent	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		59113588	48235952	18	35887										
CLMN	0	genome.wustl.edu	37	chr14	95688048	95688048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	attgctatcttccaaaaactTaagtgctttcgctatgttgt	6	8	1	0			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	14	95688048	95688048	T	C	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	missense	c.304	p.K102E	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	58	0	0	89	60	40	-	-	-	C	95688048	T	C	95688048	3	2	326	1	0	0	0	0	1	0	0	0	3572	1763	61	5	2744	5	CLMN	14	95688048	Missense_Mutation	SNP	T	TCGA-AO-A0J8-01A-21D-A045-09	36574460	95688048	11661492	19	35888										
CDH1	0	genome.wustl.edu	37	chr16	68857485	68857485	+	Frame_Shift_Del	DEL	T	T	-													0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	tgtcgaagcaggattgcaaaTtcctgccattctggggattc							TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	16	68857485	68857485	T	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2120	p.P708fs	0.048	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	151	0	0	32	23	39.66	-	-	-	-	68857485	T	-	68857485	7	5	326	1	0	1	0	1	0	0	0	0	3124	1493	52	0	2170	0	CDH1	16	68857485	Frame_Shift_Del	DEL	T	TCGA-AO-A0J8-01A-21D-A045-09		68857485	21497268	20	35889										
ZNF613	0	genome.wustl.edu	37	chr19	52448195	52448195	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	actgaatgtgacaaagcattCcgctggaaatcacagctcaa	8	10	2	2			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	19	52448195	52448195	C	T	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	silent	c.1059	p.F353	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	250	0	0	109	58	34.73	-	-	-	T	52448195	C	T	52448195	2	4	326	1	0	0	0	0	0	0	0	1	18134	854	30	2		2	ZNF613	19	52448195	Silent	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		52448195	6680788	21	35890										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	C													0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	21	36252994	36252995	-	C	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	107	0	0	96	54	36	-	-	-	C	36252995	-	C	36252994	7	5	326	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-AO-A0J8-01A-21D-A045-09		36252994	11876901	22	35891										
SLC9A7	0	genome.wustl.edu	37	chrX	46618330	46618330	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	ctgctgtcctccgccgccgcCccagaggaggaggccgaggc	15	17	0	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	X	46618330	46618330	C	A	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	silent	c.135	p.G45	1.000	prints_Na/H_exchanger_6	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	9	0	0	5	4	44.44	-	-	-	A	46618330	C	A	46618330	2	1	326	1	0	0	0	0	0	0	0	1	14808	610	22	4		4	SLC9A7	23	46618330	Silent	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09		46618330	108652230	23	35892										
FAM199X	0	genome.wustl.edu	37	chrX	103430808	103430808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	tgatgtcatacccagtattcCaagttcaccttgcctgcttc	6	13	2	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	X	103430808	103430808	C	T	SNP	FAM199X	ENST00000493442	human	ensembl	69_37n	1	known	missense	c.479	p.P160L	1.000	NULL	NULL	-	no_errors	FAM199X	HGNC	ENSG00000123575	202	0	0	145	67	31.6	-	-	-	T	103430808	C	T	103430808	3	4	326	1	0	0	0	0	1	0	0	0	5572	594	21	4	489	4	FAM199X	23	103430808	Missense_Mutation	SNP	C	TCGA-AO-A0J8-01A-21D-A045-09	56812478	103430808	51839752	24	35893										
DOCK11	0	genome.wustl.edu	37	chrX	117752580	117752580	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.08	2	0.843743695016429	1.2025641025641	3.00641025641026	0.751602564102564	1	1	0	ttcttggttggtctacttctGagggaaacttccattgctct	9	9	4	1			TCGA-AO-A0J8-01A-21D-A045-09	TCGA-AO-A0J8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ba5501-8097-4af6-b12c-bb6dcbe10cac	a6efdded-0dee-4407-a1b2-bdfdb1649a07	X	117752580	117752580	G	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.3360	p.L1120	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	222	0	0	172	84	32.81	-	-	-	C	117752580	G	C	117752580	2	2	326	1	0	0	0	0	0	0	0	1	4721	1277	45	2		2	DOCK11	23	117752580	Silent	SNP	G	TCGA-AO-A0J8-01A-21D-A045-09	14321772	117752580	37517980	25	35894										
CELA3B	0	genome.wustl.edu	37	chr1	22310738	22310738	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgctgccggtggtggactatGaacactgctccaggtggaac	14	10	0	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	22310738	22310738	G	A	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	missense	c.556	p.E186K	0.642	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	135	0	0	84	17	16.83	-	-	-	A	22310738	G	A	22310738	3	1	327	1	0	0	0	0	1	0	0	0	3243	1291	45	2	578	2	CELA3B	1	22310738	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		22310738	226939883	1	35895										
NUDC	0	genome.wustl.edu	37	chr1	27272109	27272110	+	Frame_Shift_Ins	INS	-	-	G													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tggtggaaaagatgatgtatINSgaccagcgacagaagtccat							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	27272109	27272110	-	G	INS	NUDC	ENST00000321265	human	ensembl	69_37n	1	known	frame_shift_ins	c.876_877	p.D292fs	0.999:1.000	superfamily_HSP20-like_chaperone	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDC	HGNC	ENSG00000090273	61	0	0	25	13	34.21	-	-	-	G	27272110	-	G	27272109	7	5	327	1	0	1	1	0	0	0	0	0	10794	1471	51	0	906	0	NUDC	1	27272109	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09	4961371	27272109	221978512	2	35896										
MACF1	0	genome.wustl.edu	37	chr1	39798343	39798343	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	atcagctaatgtgaaaatctCaggaactttcagcagtgggt	10	7	3	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	39798343	39798343	C	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	nonsense	c.6194	p.S2065*	0.444	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	274	0	0	64	19	22.89	-	-	-	G	39798343	C	G	39798343	4	3	327	1	0	0	0	0	0	1	0	0	9211	838	29	2	6174	2	MACF1	1	39798343	Nonsense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	12526234	39798343	209452278	3	35897										
CHI3L2	0	genome.wustl.edu	37	chr1	111777558	111777558	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tatggtggattcttctacatCacgcttggaattcattaact	7	8	4	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	111777558	111777558	C	T	SNP	CHI3L2	ENST00000369748	human	ensembl	69_37n	1	known	missense	c.359	p.S120L	0.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L2	HGNC	ENSG00000064886	126	0	0	80	20	20	-	-	-	T	111777558	C	T	111777558	3	4	327	1	0	0	0	0	1	0	0	0	3370	838	29	2	377	2	CHI3L2	1	111777558	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	71979215	111777558	137473063	4	35898										
LMNA	0	genome.wustl.edu	37	chr1	156108366	156108366	+	Frame_Shift_Del	DEL	G	G	-													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ggacctgcgggcagcctgccGacaaggcatctgccagcggc							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	156108366	156108366	G	-	DEL	LMNA	ENST00000368300	human	ensembl	69_37n	1	known	frame_shift_del	c.1786	p.D596fs	1.000	NULL	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	16	0	0	15	7	31.82	-	-	-	-	156108366	G	-	156108366	7	5	327	1	0	1	0	1	0	0	0	0	8904	1058	37	0	1849	0	LMNA	1	156108366	Frame_Shift_Del	DEL	G	TCGA-AO-A0J9-01A-11W-A050-09	44330808	156108366	93142255	5	35899										
NFASC	0	genome.wustl.edu	37	chr1	204923466	204923466	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tatcagtgcttcgcccgcaaCaaatttggcacggccctgtc	9	14	1	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	204923466	204923466	C	G	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.366	p.N122K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	106	0	0	134	33	19.76	-	-	-	G	204923466	C	G	204923466	3	3	327	1	0	0	0	0	1	0	0	0	10431	477	17	4	380	4	NFASC	1	204923466	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	48815100	204923466	44327155	6	35900										
CNST	0	genome.wustl.edu	37	chr1	246823579	246823579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	atcatcctgcccaaatgcaaCacaaaccatctaagcgaaga	5	13	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	246823579	246823579	C	T	SNP	CNST	ENST00000366513	human	ensembl	69_37n	1	known	missense	c.1915	p.H639Y	0.984	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	134	0	0	140	24	14.63	-	-	-	T	246823579	C	T	246823579	3	4	327	1	0	0	0	0	1	0	0	0	3664	478	17	4	1964	4	CNST	1	246823579	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	41900113	246823579	2427042	7	35901										
SPTBN1	0	genome.wustl.edu	37	chr2	54874276	54874276	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ctgtctttgcaggatgagcaGagtgctgtctccatgttgaa	12	8	2	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	2	54874276	54874276	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	silent	c.4875	p.Q1625	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	59	0	0	31	6	16.22	-	-	-	A	54874276	G	A	54874276	2	1	327	1	0	0	0	0	0	0	0	1	15210	933	33	2		2	SPTBN1	2	54874276	Silent	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		54874276	188325097	8	35902										
OBSL1	0	genome.wustl.edu	37	chr2	220432006	220432006	+	Frame_Shift_Del	DEL	G	G	-													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ccaactcaccaaggtgagcaGaaccgtggaacaccacgtgg							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	2	220432006	220432006	G	-	DEL	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	frame_shift_del	c.1826	p.S609fs	0.619	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	39	0	0	42	8	16	-	-	-	-	220432006	G	-	220432006	7	5	327	1	0	1	0	1	0	0	0	0	10886	942	33	0	4088	0	OBSL1	2	220432006	Frame_Shift_Del	DEL	G	TCGA-AO-A0J9-01A-11W-A050-09	165557730	220432006	22767367	9	35903										
LRRC3B	0	genome.wustl.edu	37	chr3	26751433	26751433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tttaaggacctccatcaactGagagttctcaacctgtccaa	6	12	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	26751433	26751433	G	A	SNP	LRRC3B	ENST00000396641	human	ensembl	69_37n	1	known	silent	c.270	p.L90	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796	248	0	0	207	24	10.39	-	-	-	A	26751433	G	A	26751433	2	1	327	1	0	0	0	0	0	0	0	1	9062	1277	45	2		2	LRRC3B	3	26751433	Silent	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		26751433	171270997	10	35904										
SLC4A7	0	genome.wustl.edu	37	chr3	27418334	27418334	+	Frame_Shift_Del	DEL	G	G	-													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tcacactcacaggtttatcaGgactatttaaaacaaagaat							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	27418334	27418334	G	-	DEL	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	frame_shift_del	c.3701	p.P1234fs	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	236	0	0	39	12	23.53	-	-	-	-	27418334	G	-	27418334	7	5	327	1	0	1	0	1	0	0	0	0	14747	1000	35	0	82	0	SLC4A7	3	27418334	Frame_Shift_Del	DEL	G	TCGA-AO-A0J9-01A-11W-A050-09	666901	27418334	170604096	11	35905										
DALRD3	0	genome.wustl.edu	37	chr3	49053306	49053306	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgtaccaggaacttgcatatCtagagacagagactgagtca	10	8	2	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	49053306	49053306	C	T	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	splice_site	c.1444-1	e11-1	1.000	-	-	-	no_errors	DALRD3	HGNC	ENSG00000178149	110	0	0	55	10	15.38	-	-	-	T	49053306	C	T	49053306	5	4	327	1	0	0	0	0	0	0	1	0	4261	927	32	2	196	2	DALRD3	3	49053306	Splice_Site	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	21634972	49053306	148969124	12	35906										
SEMA3B	0	genome.wustl.edu	37	chr3	50310760	50310760	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gtcaaggtattttggatcccGgagagcgagaacccagacga	13	9	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	50310760	50310760	G	A	SNP	SEMA3B	ENST00000316347	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.587	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171	37	0	0	32	9	21.95	-	-	-	A	50310760	G	A	50310760	1	1	327	0	1	0	0	0	0	0	0	0	14113	1103	39	1		1	SEMA3B	3	50310760	RNA	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	1257454	50310760	147711670	13	35907										
DNAH12	0	genome.wustl.edu	37	chr3	57443474	57443474	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ggctgcagcgatcacatcgtGaacactccggagcattaggt	12	11	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	57443474	57443474	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.3241	p.H1081Y	0.998	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	103	0	0	59	11	15.71	-	-	-	A	57443474	G	A	57443474	3	1	327	1	0	0	0	0	1	0	0	0	4636	1290	45	2	6189	2	DNAH12	3	57443474	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	7132714	57443474	140578956	14	35908										
HTR1F	0	genome.wustl.edu	37	chr3	88040228	88040229	+	Frame_Shift_Ins	INS	-	-	A													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	attacctgctgcacgtgctcINScatcttgcatctctcagcta							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	88040228	88040229	-	A	INS	HTR1F	ENST00000319595	human	ensembl	69_37n	1	known	frame_shift_ins	c.329_330	p.I111fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1F	HGNC	ENSG00000179097	51	0	0	61	27	30.68	-	-	-	A	88040229	-	A	88040228	7	5	327	1	0	1	1	0	0	0	0	0	7494	855	30	0	331	0	HTR1F	3	88040228	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09	30596754	88040228	109982202	15	35909										
ANKRD17	0	genome.wustl.edu	37	chr4	74019654	74019654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttcattagaatgcgtattaaTgccagccccattttctagca	6	10	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	4	74019654	74019654	T	C	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.1177	p.I393V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	86	0	0	27	24	47.06	-	-	-	C	74019654	T	C	74019654	3	2	327	1	0	0	0	0	1	0	0	0	646	1464	51	5	6750	5	ANKRD17	4	74019654	Missense_Mutation	SNP	T	TCGA-AO-A0J9-01A-11W-A050-09		74019654	117134622	16	35910										
SLC6A3	0	genome.wustl.edu	37	chr5	1403164	1403165	+	Frame_Shift_Ins	INS	-	-	G													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gaagatgtaggctccgtagtINSgggggggtctgaaggtcaca							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	1403164	1403165	-	G	INS	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1640_1639	p.H547fs	0.992:0.931	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_dopamine	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	34	0	0	34	5	12.82	-	-	-	G	1403165	-	G	1403164	7	5	327	1	0	1	1	0	0	0	0	0	14774	1696	59	0	234	0	SLC6A3	5	1403164	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09		1403164	179512096	17	35911										
MAST4	0	genome.wustl.edu	37	chr5	66438062	66438062	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	aggatgacacaagttattttGatagtatgtgctttatctga	9	4	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	66438062	66438062	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.2623	p.D875N	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	171	0	0	111	16	12.6	-	-	-	A	66438062	G	A	66438062	3	1	327	1	0	0	0	0	1	0	0	0	9398	1290	45	2	2822	2	MAST4	5	66438062	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	65034898	66438062	114477198	18	35912										
AGGF1	0	genome.wustl.edu	37	chr5	76349934	76349934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttagagcccaccttcgccttGataagaaagatgaatctttt	7	9	1	5			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	76349934	76349934	G	A	SNP	AGGF1	ENST00000312916	human	ensembl	69_37n	1	known	missense	c.1612	p.D538N	1.000	NULL	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252	104	0	0	119	16	11.85	-	-	-	A	76349934	G	A	76349934	3	1	327	1	0	0	0	0	1	0	0	0	382	1290	45	2	1650	2	AGGF1	5	76349934	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	9911872	76349934	104565326	19	35913										
RHOBTB3	0	genome.wustl.edu	37	chr5	95128768	95128768	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttcttaaaacttcagtggaaGaacgcagttttgttgaaaag	9	5	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	95128768	95128768	G	C	SNP	RHOBTB3	ENST00000379982	human	ensembl	69_37n	1	known	missense	c.1726	p.E576Q	1.000	NULL	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292	326	0	0	140	29	17.16	-	-	-	C	95128768	G	C	95128768	3	2	327	1	0	0	0	0	1	0	0	0	13419	943	33	2	1772	2	RHOBTB3	5	95128768	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	18778834	95128768	85786492	20	35914										
ERAP2	0	genome.wustl.edu	37	chr5	96237303	96237303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgctggtggttaaacaagacGggtgttcactccgactgcaa	12	9	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	96237303	96237303	G	A	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	missense	c.1666	p.G556R	0.667	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	111	0	0	95	22	18.64	-	-	-	A	96237303	G	A	96237303	3	1	327	1	0	0	0	0	1	0	0	0	5241	1116	39	1	1704	1	ERAP2	5	96237303	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	1108535	96237303	84677957	21	35915										
RAPGEF6	0	genome.wustl.edu	37	chr5	130841179	130841179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tccatctggatgactgatttCcacagtgccgtttaaaataa	7	9	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	130841179	130841179	C	T	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.979	p.E327K	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	221	1	0.45	81	29	26.36	-	-	-	T	130841179	C	T	130841179	3	4	327	1	0	0	0	0	1	0	0	0	13131	864	30	2	4388	2	RAPGEF6	5	130841179	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	34603876	130841179	50074081	22	35916										
LRRTM2	0	genome.wustl.edu	37	chr5	138210089	138210089	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgtctgtggcgtttggcactGagtggaagccctgagagtcg	16	8	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	138210089	138210089	G	A	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	missense	c.161	p.S54L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	118	0	0	100	29	22.48	-	-	-	A	138210089	G	A	138210089	3	1	327	1	0	0	0	0	1	0	0	0	9106	1294	45	2	1393	2	LRRTM2	5	138210089	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	7368910	138210089	42705171	23	35917										
PCDHB10	0	genome.wustl.edu	37	chr5	140573243	140573243	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgtttttaagattaatgacaGagactctggagaaaatggaa	10	3	1	4			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	140573243	140573243	G	T	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	missense	c.1118	p.R373I	0.150	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	93	0	0	101	14	12.17	-	-	-	T	140573243	G	T	140573243	3	4	327	1	0	0	0	0	1	0	0	0	11608	942	33	2	1120	2	PCDHB10	5	140573243	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	2363154	140573243	40342017	24	35918										
ARSI	0	genome.wustl.edu	37	chr5	149677569	149677570	+	Frame_Shift_Ins	INS	-	-	C													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ctcggagcggccagttgctgINSccccccgagaaagtctggcc							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	149677569	149677570	-	C	INS	ARSI	ENST00000328668	human	ensembl	69_37n	-1	known	frame_shift_ins	c.918_917	p.S307fs	0.998:1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876	17	0	0	14	3	17.65	-	-	-	C	149677570	-	C	149677569	7	5	327	1	0	1	1	0	0	0	0	0	998	1306	46	0	795	0	ARSI	5	149677569	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09	9104326	149677569	31237691	25	35919										
TFAP2A	0	genome.wustl.edu	37	chr6	10404880	10404880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cggaactgaacagaagacttCgttggggttcaccacgccgc	12	12	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	10404880	10404880	C	T	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.625	p.E209K	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	63	0	0	54	9	14.29	-	-	-	T	10404880	C	T	10404880	3	4	327	1	0	0	0	0	1	0	0	0	15882	893	31	1	704	1	TFAP2A	6	10404880	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		10404880	160710187	26	35920										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056117	26056117	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttggcagctttcttgggcttCgcaaccttggccttctttgg	11	11	2	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	26056117	26056117	C	T	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	122	1	0.81	81	14	14.74	-	-	-	T	26056117	C	T	26056117	2	4	327	1	0	0	0	0	0	0	0	1	7175	871	31	1		1	HIST1H1C	6	26056117	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	15651237	26056117	145058950	27	35921										
RARS2	0	genome.wustl.edu	37	chr6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ctggcaagcaatagcgcggcGaaagccgcacgccatgtcca	12	14	0	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	88299660	88299660	G	A	SNP	RARS2	ENST00000369536	human	ensembl	69_37n	-1	known	missense	c.16	p.R6C	0.853	superfamily_Arg-tRNA-synth_N	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS2	HGNC	ENSG00000146282	37	0	0	33	5	13.16	-	-	-	A	88299660	G	A	88299660	3	1	327	1	0	0	0	0	1	0	0	0	13142	1058	37	1	1800	1	RARS2	6	88299660	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	62243543	88299660	82815407	28	35922										
AIM1	0	genome.wustl.edu	37	chr6	106967048	106967048	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gaactaaatcttaaaaccccTaagaatcttgacagtttggg	7	8	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	106967048	106967048	T	A	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	silent	c.741	p.P247	0.956	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	57	0	0	48	15	23.81	-	-	-	A	106967048	T	A	106967048	2	1	327	1	0	0	0	0	0	0	0	1	430	1509	53	5		5	AIM1	6	106967048	Silent	SNP	T	TCGA-AO-A0J9-01A-11W-A050-09	18667388	106967048	64148019	29	35923										
NEUROD6	0	genome.wustl.edu	37	chr7	31378659	31378659	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttttcctaagacccctccttCtaggcaacccattttcatct	3	15	3	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	31378659	31378659	C	G	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.224	p.R75T	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	1100	0	0	700	92	11.6	-	-	-	G	31378659	C	G	31378659	3	3	327	1	0	0	0	0	1	0	0	0	10423	913	32	2	793	2	NEUROD6	7	31378659	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		31378659	127760004	30	35924										
PCLO	0	genome.wustl.edu	37	chr7	82595715	82595715	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	taggagatgctttgggtcctGatggtgcaggtggcattttg	16	5	0	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	82595715	82595715	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.3389	p.S1130L	0.005	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	249	1	0.4	109	21	16.15	-	-	-	A	82595715	G	A	82595715	3	1	327	1	0	0	0	0	1	0	0	0	11656	1294	45	2	12144	2	PCLO	7	82595715	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	51217056	82595715	76542948	31	35925										
CYP3A7	0	genome.wustl.edu	37	chr7	99308411	99308411	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tttctgctggacatcagggtGagtggccagttcatatataa	11	7	3	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	99308411	99308411	G	A	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	missense	c.970	p.H324Y	0.141	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	341	0	0	116	19	14.07	-	-	-	A	99308411	G	A	99308411	3	1	327	1	0	0	0	0	1	0	0	0	4212	1290	45	2	557	2	CYP3A7	7	99308411	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	16712696	99308411	59830252	32	35926										
FOXP2	0	genome.wustl.edu	37	chr7	114329880	114329880	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agccagtgattgcagaggatGaagactgcccaatgtcctta	11	9	0	4			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	114329880	114329880	G	A	SNP	FOXP2	ENST00000408937	human	ensembl	69_37n	1	known	missense	c.2122	p.E708K	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573	180	0	0	142	21	12.88	-	-	-	A	114329880	G	A	114329880	3	1	327	1	0	0	0	0	1	0	0	0	6075	1291	45	2	2276	2	FOXP2	7	114329880	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	15021469	114329880	44808783	33	35927										
KLHDC10	0	genome.wustl.edu	37	chr7	129761906	129761906	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttatccaggctatggccatcAtcaatggctccctttatgtc	7	12	2	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	129761906	129761906	A	T	SNP	KLHDC10	ENST00000335420	human	ensembl	69_37n	1	known	missense	c.643	p.I215F	1.000	pfam_Kelch_1,pfam_Kelch_2	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	-	no_errors	KLHDC10	HGNC	ENSG00000128607	147	0	0	85	16	15.84	-	-	-	T	129761906	A	T	129761906	3	4	327	1	0	0	0	0	1	0	0	0	8408	217	8	5	661	5	KLHDC10	7	129761906	Missense_Mutation	SNP	A	TCGA-AO-A0J9-01A-11W-A050-09	15432026	129761906	29376757	34	35928										
DLGAP2	0	genome.wustl.edu	37	chr8	1626478	1626478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	catcaccacggaggacaaagGccttcagttcggctcatcct	9	14	3	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	1626478	1626478	G	T	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	1	known	missense	c.2147	p.G716V	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	62	0	0	40	6	13.04	-	-	-	T	1626478	G	T	1626478	3	4	327	1	0	0	0	0	1	0	0	0	4596	1203	42	4	2177	4	DLGAP2	8	1626478	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		1626478	144737544	35	35929										
PRKDC	0	genome.wustl.edu	37	chr8	48691190	48691190	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gcggagcgccaggaaagcctCagggcttgtactcatcctca	12	13	3	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	48691190	48691190	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.11680	p.E3894K	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	76	0	0	27	7	20.59	-	-	-	T	48691190	C	T	48691190	3	4	327	1	0	0	0	0	1	0	0	0	12602	835	29	2	719	2	PRKDC	8	48691190	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	47064712	48691190	97672832	36	35930										
RNF19A	0	genome.wustl.edu	37	chr8	101272152	101272152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gctggcattatcactaactgTtcccaagctgactgtgccag	9	12	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	101272152	101272152	T	C	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	missense	c.1756	p.T586A	0.998	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	251	0	0	79	58	42.34	-	-	-	C	101272152	T	C	101272152	3	2	327	1	0	0	0	0	1	0	0	0	13556	1725	60	5	768	5	RNF19A	8	101272152	Missense_Mutation	SNP	T	TCGA-AO-A0J9-01A-11W-A050-09	52580962	101272152	45091870	37	35931										
UBR5	0	genome.wustl.edu	37	chr8	103291157	103291157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ggccaaaaagatcctcctttCtagcatttggctggaatttt	8	9	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	103291157	103291157	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.6185	p.R2062K	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	109	0	0	45	10	18.18	-	-	-	T	103291157	C	T	103291157	3	4	327	1	0	0	0	0	1	0	0	0	17002	913	32	2	2278	2	UBR5	8	103291157	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	2019005	103291157	43072865	38	35932										
EIF3E	0	genome.wustl.edu	37	chr8	109260902	109260902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgccgatccaaaaagtgcgcGatgcgagtagtcaagtcgta	12	9	1	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	109260902	109260902	G	A	SNP	EIF3E	ENST00000521440	human	ensembl	69_37n	-1	putative	missense	c.26	p.S9L	1.000	pfam_eIF3_su6_N	pfam_eIF3_su6_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EIF3E	HGNC	ENSG00000104408	109	0	0	104	24	18.46	-	-	-	A	109260902	G	A	109260902	3	1	327	1	0	0	0	0	1	0	0	0	5052	1048	37	1	1359	1	EIF3E	8	109260902	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	5969745	109260902	37103120	39	35933										
IFNA13	0	genome.wustl.edu	37	chr9	21367848	21367848	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ccaaagtcatgtctgtccatCagacaggaggaaggagagat	12	8	3	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	21367848	21367848	C	T	SNP	IFNA13	ENST00000449498	human	ensembl	69_37n	-1	known	silent	c.162	p.L54	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816	82	0	0	74	9	10.84	-	-	-	T	21367848	C	T	21367848	2	4	327	1	0	0	0	0	0	0	0	1	7587	813	29	2		2	IFNA13	9	21367848	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		21367848	119845583	40	35934										
TLN1	0	genome.wustl.edu	37	chr9	35705643	35705643	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agcaagagggcccagctcctCtgggctggtgtttgacttgg	15	10	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	35705643	35705643	C	G	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.5638	p.E1880Q	1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	29	0	0	48	8	14.29	-	-	-	G	35705643	C	G	35705643	3	3	327	1	0	0	0	0	1	0	0	0	16042	922	32	2	2047	2	TLN1	9	35705643	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	14337795	35705643	105507788	41	35935										
UBQLN1	0	genome.wustl.edu	37	chr9	86294885	86294885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agttgtcgctgcatctgactCtgtagttcagagaagttggt	12	7	3	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	86294885	86294885	C	T	SNP	UBQLN1	ENST00000376395	human	ensembl	69_37n	-1	known	silent	c.516	p.Q172	1.000	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018	145	0	0	58	12	17.14	-	-	-	T	86294885	C	T	86294885	2	4	327	1	0	0	0	0	0	0	0	1	16993	912	32	2		2	UBQLN1	9	86294885	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	50589242	86294885	54918546	42	35936										
GOLM1	0	genome.wustl.edu	37	chr9	88650389	88650389	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tggctcactgacagggcagcCtgcacctgtggggtctggcc	15	13	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	88650389	88650389	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	69_37n	-1	known	silent	c.909	p.Q303	0.013	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052	131	0	0	108	44	28.95	-	-	-	T	88650389	C	T	88650389	2	4	327	1	0	0	0	0	0	0	0	1	6616	680	24	4		4	GOLM1	9	88650389	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	2355504	88650389	52563042	43	35937										
ECM2	0	genome.wustl.edu	37	chr9	95277306	95277306	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cttttgctctgtatcttcttCtttcacttcttcatcctcct	2	14	7	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	95277306	95277306	C	G	SNP	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	missense	c.661	p.E221Q	0.031	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	313	0	0	153	30	16.39	-	-	-	G	95277306	C	G	95277306	3	3	327	1	0	0	0	0	1	0	0	0	4933	922	32	2	1466	2	ECM2	9	95277306	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	6626917	95277306	45936125	44	35938										
DNM1	0	genome.wustl.edu	37	chr9	130982538	130982538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cgccgccttggctgctgaacGaaagttcttcctctcccatc	8	16	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	130982538	130982538	G	T	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.767	p.R256L	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	70	0	0	47	10	17.24	-	-	-	T	130982538	G	T	130982538	3	4	327	1	0	0	0	0	1	0	0	0	4705	1058	37	3	789	3	DNM1	9	130982538	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	35705232	130982538	10230893	45	35939										
ODF2	0	genome.wustl.edu	37	chr9	131256860	131256860	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	atcctgaagatcacggaggcGaagctggctgagtgccaaga	14	9	1	4			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	131256860	131256860	G	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	silent	c.1824	p.A608	0.657	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	93	0	0	35	20	36.36	-	-	-	A	131256860	G	A	131256860	2	1	327	1	0	0	0	0	0	0	0	1	10900	1045	37	1		1	ODF2	9	131256860	Silent	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	274322	131256860	9956571	46	35940										
DDX50	0	genome.wustl.edu	37	chr10	70666626	70666626	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	aaggatttaatagactttcaGatgaattctccaaatctcat	5	7	3	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	10	70666626	70666626	G	T	SNP	DDX50	ENST00000373585	human	ensembl	69_37n	1	known	missense	c.247	p.D83Y	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	115	0	0	101	17	14.41	-	-	-	T	70666626	G	T	70666626	3	4	327	1	0	0	0	0	1	0	0	0	4399	942	33	2	253	2	DDX50	10	70666626	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		70666626	64868121	47	35941										
CPN1	0	genome.wustl.edu	37	chr10	101808562	101808562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cacagttactgtctctgggtCatacccaggtgctgtggcac	11	12	2	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	10	101808562	101808562	C	T	SNP	CPN1	ENST00000370418	human	ensembl	69_37n	-1	known	missense	c.1183	p.D395N	0.002	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054	168	1	0.59	174	50	22.22	-	-	-	T	101808562	C	T	101808562	3	4	327	1	0	0	0	0	1	0	0	0	3839	826	29	2	201	2	CPN1	10	101808562	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	31141936	101808562	33726185	48	35942										
PIWIL4	0	genome.wustl.edu	37	chr11	94318660	94318660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttggacggaacttctataatCcttcagagccaatggaaatt	8	8	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	11	94318660	94318660	C	T	SNP	PIWIL4	ENST00000299001	human	ensembl	69_37n	1	known	missense	c.685	p.P229S	0.999	superfamily_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627	605	0	0	157	29	15.59	-	-	-	T	94318660	C	T	94318660	3	4	327	1	0	0	0	0	1	0	0	0	12034	855	30	2	707	2	PIWIL4	11	94318660	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		94318660	40687856	49	35943										
ZNF259	0	genome.wustl.edu	37	chr11	116655592	116655592	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tactagcttcatgttggtctGagcgggggcattgcattctg	13	8	3	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	11	116655592	116655592	G	A	SNP	ZNF259	ENST00000227322	human	ensembl	69_37n	-1	known	nonsense	c.799	p.Q267*	0.954	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	-	no_errors	ZNF259	HGNC	ENSG00000109917	109	0	0	84	28	25	-	-	-	A	116655592	G	A	116655592	4	1	327	1	0	0	0	0	0	1	0	0	17897	1299	45	2	608	2	ZNF259	11	116655592	Nonsense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	22336932	116655592	18350924	50	35944										
SOX5	0	genome.wustl.edu	37	chr12	23687346	23687346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gcatcccaggctctgggctgCtagacacgcttgagtgctcc	12	14	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	23687346	23687346	C	T	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.2099	p.S700N	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	253	0	0	107	25	18.94	-	-	-	T	23687346	C	T	23687346	3	4	327	1	0	0	0	0	1	0	0	0	15043	797	28	4	196	4	SOX5	12	23687346	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		23687346	110164549	51	35945										
STK38L	0	genome.wustl.edu	37	chr12	27461300	27461300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	acgtcgatcacaacacgctcGcaaagaaacagagttcttac	7	12	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	27461300	27461300	G	A	SNP	STK38L	ENST00000389032	human	ensembl	69_37n	1	known	missense	c.215	p.R72H	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38L	HGNC	ENSG00000211455	225	0	0	90	27	23.08	-	-	-	A	27461300	G	A	27461300	3	1	327	1	0	0	0	0	1	0	0	0	15395	1087	38	1	225	1	STK38L	12	27461300	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	3773954	27461300	106390595	52	35946										
ANKS1B	0	genome.wustl.edu	37	chr12	99447042	99447042	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ttcaatggaatccagccactCagctacagaggtgggatggt	12	9	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	99447042	99447042	C	T	SNP	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	missense	c.2671	p.E891K	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	286	0	0	91	63	40.91	-	-	-	T	99447042	C	T	99447042	3	4	327	1	0	0	0	0	1	0	0	0	688	835	29	2	1306	2	ANKS1B	12	99447042	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	71985742	99447042	34404853	53	35947										
CORO1C	0	genome.wustl.edu	37	chr12	109042522	109042522	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	atgtacccgtgcttcaaggaGatgaggattgggtctgcatt	13	7	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	109042522	109042522	G	C	SNP	CORO1C	ENST00000420959	human	ensembl	69_37n	-1	known	missense	c.1323	p.I441M	0.998	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880	131	1	0.76	113	34	23.13	-	-	-	C	109042522	G	C	109042522	3	2	327	1	0	0	0	0	1	0	0	0	3785	932	33	2	268	2	CORO1C	12	109042522	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	9595480	109042522	24809373	54	35948										
ACACB	0	genome.wustl.edu	37	chr12	109678904	109678904	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tcgaggagtccgtgcgctacAtggttatgcgctacggcagc	14	11	0	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	109678904	109678904	A	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.4840	p.M1614L	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	67	0	0	79	19	19.19	-	-	-	T	109678904	A	T	109678904	3	4	327	1	0	0	0	0	1	0	0	0	107	217	8	5	4978	5	ACACB	12	109678904	Missense_Mutation	SNP	A	TCGA-AO-A0J9-01A-11W-A050-09	636382	109678904	24172991	55	35949										
USPL1	0	genome.wustl.edu	37	chr13	31233065	31233065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	atccaattgatattgccagtGagtctgcatgcaccactgtt	8	10	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	31233065	31233065	G	A	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.2851	p.E951K	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	87	0	0	46	14	23.33	-	-	-	A	31233065	G	A	31233065	3	1	327	1	0	0	0	0	1	0	0	0	17189	1291	45	2	2881	2	USPL1	13	31233065	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		31233065	83936813	56	35950										
NDFIP2	0	genome.wustl.edu	37	chr13	80055541	80055541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	aaggggccctgcggcgacgaCgtcgtcgacgggggtggccg	20	12	0	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	80055541	80055541	C	T	SNP	NDFIP2	ENST00000218652	human	ensembl	69_37n	1	known	missense	c.203	p.T68M	0.045	NULL	pfam_NEDD4/BSD2	-	no_errors	NDFIP2	HGNC	ENSG00000102471	40	0	0	27	18	40	-	-	-	T	80055541	C	T	80055541	3	4	327	1	0	0	0	0	1	0	0	0	10318	536	19	1	205	1	NDFIP2	13	80055541	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	48822476	80055541	35114337	57	35951										
MYH6	0	genome.wustl.edu	37	chr14	23871908	23871908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agcagccccctcactcacatCggtggccatgagctcctcgg	10	17	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	23871908	23871908	C	G	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.1000	p.D334H	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	35	0	0	29	5	14.71	-	-	-	G	23871908	C	G	23871908	3	3	327	1	0	0	0	0	1	0	0	0	10110	884	31	3	4935	3	MYH6	14	23871908	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		23871908	83477632	58	35952										
SYNE2	0	genome.wustl.edu	37	chr14	64580077	64580077	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agggcaccacacctcctattGaggctgacactctggactct	9	14	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	64580077	64580077	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.12628	p.E4210K	0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	79	0	0	58	14	19.44	-	-	-	A	64580077	G	A	64580077	3	1	327	1	0	0	0	0	1	0	0	0	15538	1291	45	2	12886	2	SYNE2	14	64580077	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	40708169	64580077	42769463	59	35953										
SIPA1L1	0	genome.wustl.edu	37	chr14	72139081	72139081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ctagtttgtttcaaaaggctGtgaatcggtggagatgactc	12	6	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	72139081	72139081	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.2846	p.C949Y	1.000	superfamily_PDZ	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	114	0	0	79	18	18.56	-	-	-	A	72139081	G	A	72139081	3	1	327	1	0	0	0	0	1	0	0	0	14418	1377	48	4	2876	4	SIPA1L1	14	72139081	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	7559004	72139081	35210459	60	35954										
NUMB	0	genome.wustl.edu	37	chr14	73743785	73743785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	caggctgagaggtgaggaatGcattcccttggaaaggtgat	15	6	0	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	73743785	73743785	G	A	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	missense	c.1457	p.A486V	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	101	0	0	131	16	10.88	-	-	-	A	73743785	G	A	73743785	3	1	327	1	0	0	0	0	1	0	0	0	10824	1319	46	4	502	4	NUMB	14	73743785	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	1604704	73743785	33605755	61	35955										
LTBP2	0	genome.wustl.edu	37	chr14	74995673	74995673	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gaggttacctgtgccaggcaGagggcatttctcacactcgc	12	12	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	74995673	74995673	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	silent	c.2140	p.L714	0.998	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	15	0	0	20	7	25.93	-	-	-	A	74995673	G	A	74995673	2	1	327	1	0	0	0	0	0	0	0	1	9140	933	33	2		2	LTBP2	14	74995673	Silent	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	1251888	74995673	32353867	62	35956										
SEL1L	0	genome.wustl.edu	37	chr14	81953845	81953845	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gaagctaaattaaaatacttCaaggcctgtttataatctct	5	7	2	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	81953845	81953845	C	T	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	silent	c.1521	p.L507	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537	153	0	0	64	9	12.33	-	-	-	T	81953845	C	T	81953845	2	4	327	1	0	0	0	0	0	0	0	1	14098	825	29	2		2	SEL1L	14	81953845	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	6958172	81953845	25395695	63	35957										
GABRG3	0	genome.wustl.edu	37	chr15	27777879	27777879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agactgtcagagcttcttctGctgctatgaagaatgtaaat	9	7	3	4			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	27777879	27777879	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	69_37n	1	known	missense	c.1256	p.C419Y	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	268	0	0	96	89	48.11	-	-	-	A	27777879	G	A	27777879	3	1	327	1	0	0	0	0	1	0	0	0	6222	1319	46	4	1294	4	GABRG3	15	27777879	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		27777879	74753513	64	35958										
TJP1	0	genome.wustl.edu	37	chr15	30003159	30003159	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tggatgggttcatagcgtttCtcgccaaatgatctatccac	9	10	3	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	30003159	30003159	C	T	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	silent	c.4248	p.E1416	0.997	NULL	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	208	0	0	236	110	31.79	-	-	-	T	30003159	C	T	30003159	2	4	327	1	0	0	0	0	0	0	0	1	16024	912	32	2		2	TJP1	15	30003159	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	2225280	30003159	72528233	65	35959										
FBN1	0	genome.wustl.edu	37	chr15	48780599	48780599	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tcttcagaatcaagagcaaaGccgctgtcacacctgcactt	7	13	4	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	48780599	48780599	G	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.3174	p.G1058	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	120	0	0	32	19	37.25	-	-	-	A	48780599	G	A	48780599	2	1	327	1	0	0	0	0	0	0	0	1	5748	958	34	4		4	FBN1	15	48780599	Silent	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	18777440	48780599	53750793	66	35960										
TMOD3	0	genome.wustl.edu	37	chr15	52161504	52161504	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gagagcatctcctttcatatCtggagaaagaagcattggag	11	7	3	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	52161504	52161504	C	T	SNP	TMOD3	ENST00000308580	human	ensembl	69_37n	1	known	silent	c.217	p.L73	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	236	0	0	142	176	55.17	-	-	-	T	52161504	C	T	52161504	2	4	327	1	0	0	0	0	0	0	0	1	16330	912	32	2		2	TMOD3	15	52161504	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	3380905	52161504	50369888	67	35961										
CDH1	0	genome.wustl.edu	37	chr16	68849648	68849648	+	Frame_Shift_Del	DEL	G	G	-													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	caggagccagacacatttatGgaacagaaaataacgtaagt							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	16	68849648	68849648	G	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.1551	p.E518fs	0.205	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	227	0	0	96	49	33.56	-	-	-	-	68849648	G	-	68849648	7	5	327	1	0	1	0	1	0	0	0	0	3124	1348	47	0	1589	0	CDH1	16	68849648	Frame_Shift_Del	DEL	G	TCGA-AO-A0J9-01A-11W-A050-09		68849648	21505105	68	35962										
WDR59	0	genome.wustl.edu	37	chr16	74972086	74972086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	actggaggtagcaagaatgtGctcgctgtctgggtgccagt	15	8	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	16	74972086	74972086	G	A	SNP	WDR59	ENST00000262144	human	ensembl	69_37n	-1	known	missense	c.613	p.H205Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_UBQ-conjugating_enzyme/RWD,smart_WD40_repeat,smart_RWD-domain,pfscan_RWD-domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR59	HGNC	ENSG00000103091	295	0	0	210	30	12.4	-	-	-	A	74972086	G	A	74972086	3	1	327	1	0	0	0	0	1	0	0	0	17405	1319	46	4	2387	4	WDR59	16	74972086	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	6122438	74972086	15382667	69	35963										
RNMTL1	0	genome.wustl.edu	37	chr17	685930	685930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tatcccggggacaggaggctGaggtgatgtggttcttgagc	17	7	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	685930	685930	G	A	SNP	RNMTL1	ENST00000571157	human	ensembl	69_37n	1	putative	missense	c.91	p.E31K	0.996	NULL	pfam_SpoU_subst-bd,pfam_SpoU_MeTrfase,smart_SpoU_subst-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNMTL1	HGNC	ENSG00000171861	25	0	0	14	5	26.32	-	-	-	A	685930	G	A	685930	3	1	327	1	0	0	0	0	1	0	0	0	13593	1277	45	2	314	2	RNMTL1	17	685930	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		685930	80509280	70	35964										
DNAH2	0	genome.wustl.edu	37	chr17	7627002	7627002	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	aatcagtggagcccgaggcaGatgtggtaggcttgggtctt	16	7	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	7627002	7627002	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.223	p.D75H	0.327	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	272	0	0	240	32	11.76	-	-	-	C	7627002	G	C	7627002	3	2	327	1	0	0	0	0	1	0	0	0	4638	942	33	2	229	2	DNAH2	17	7627002	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	6941072	7627002	73568208	71	35965										
MTMR4	0	genome.wustl.edu	37	chr17	56573225	56573225	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cttggagagtgcactgacagCttctgtttcaggacaatgtt	11	8	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	56573225	56573225	C	A	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.2278	p.A760S	0.002	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	79	0	0	69	22	24.18	-	-	-	A	56573225	C	A	56573225	3	1	327	1	0	0	0	0	1	0	0	0	10018	797	28	4	1325	4	MTMR4	17	56573225	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	48946223	56573225	24621985	72	35966										
KPNA2	0	genome.wustl.edu	37	chr17	66036815	66036815	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gcactgtaaattggtctgttGatgacattgtcaaaggcata	10	6	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	66036815	66036815	G	A	SNP	KPNA2	ENST00000330459	human	ensembl	69_37n	1	known	missense	c.235	p.D79N	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481	93	0	0	45	14	23.73	-	-	-	A	66036815	G	A	66036815	3	1	327	1	0	0	0	0	1	0	0	0	8483	1290	45	2	245	2	KPNA2	17	66036815	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	9463590	66036815	15158395	73	35967										
THOC1	0	genome.wustl.edu	37	chr18	247878	247878	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	agttttccatgaaatcttctCatagcattgcacagggttcc	7	10	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	247878	247878	C	T	SNP	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	missense	c.757	p.E253K	1.000	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	163	0	0	64	11	14.67	-	-	-	T	247878	C	T	247878	3	4	327	1	0	0	0	0	1	0	0	0	15959	835	29	2	1264	2	THOC1	18	247878	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09		247878	77829370	74	35968										
TCEB3C	0	genome.wustl.edu	37	chr18	44555531	44555532	+	Frame_Shift_Ins	INS	-	-	CA													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cgaagccccgcgggacgattINStgtgccccttgctgtggctc							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	44555531	44555532	-	CA	INS	TCEB3C	ENST00000330682	human	ensembl	69_37n	-1	known	frame_shift_ins	c.683_682	p.K228fs	0.002:0.022	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3C	HGNC	ENSG00000183791	38	0	0	60	20	25	-	-	-	CA	44555532	-	CA	44555531	7	5	327	1	0	1	1	0	0	0	0	0	15778	1841	64	0	2604	0	TCEB3C	18	44555531	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09	44307653	44555531	33521717	75	35969										
CDH19	0	genome.wustl.edu	37	chr18	64211462	64211462	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tggtgctcaaaatccactttCtgcaaagaaacacagtatac	6	10	2	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	64211462	64211462	C	T	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	splice_site	c.961-1	e6-1	1.000	-	-	-	no_errors	CDH19	HGNC	ENSG00000071991	201	0	0	126	44	25.88	-	-	-	T	64211462	C	T	64211462	5	4	327	1	0	0	0	0	0	0	1	0	3133	927	32	2	1382	2	CDH19	18	64211462	Splice_Site	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	19655931	64211462	13865786	76	35970										
ZNF516	0	genome.wustl.edu	37	chr18	74153933	74153934	+	Frame_Shift_Ins	INS	-	-	G													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	cgcgtgcggctggcctcgacINStctgcggtggatggcattgt							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	74153933	74153934	-	G	INS	ZNF516	ENST00000443185	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1078_1077	p.V359fs	0.000:0.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493	9	0	0	12	11	47.83	-	-	-	G	74153934	-	G	74153933	7	5	327	1	0	1	1	0	0	0	0	0	18056	565	20	0	2434	0	ZNF516	18	74153933	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09	9942471	74153933	3923315	77	35971										
FBN3	0	genome.wustl.edu	37	chr19	8176866	8176867	+	Frame_Shift_Ins	INS	-	-	T													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ccccaggtactcaccgtgacINSattcgaagccatcccccacc							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	8176866	8176867	-	T	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3956_3955	p.C1319fs	1.000:1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	124	0	0	47	7	12.96	-	-	-	T	8176867	-	T	8176866	7	5	327	1	0	1	1	0	0	0	0	0	5750	478	17	0	4609	0	FBN3	19	8176866	Frame_Shift_Ins	INS	-	TCGA-AO-A0J9-01A-11W-A050-09		8176866	50952117	78	35972										
KRI1	0	genome.wustl.edu	37	chr19	10675704	10675704	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gtcccgctcctgctggggatCaaattcctagggcaggaaaa	12	11	1	0			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	10675704	10675704	C	T	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	missense	c.193	p.D65N	1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	96	0	0	45	59	56.73	-	-	-	T	10675704	C	T	10675704	3	4	327	1	0	0	0	0	1	0	0	0	8497	826	29	2	2004	2	KRI1	19	10675704	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	2498838	10675704	48453279	79	35973										
IL27RA	0	genome.wustl.edu	37	chr19	14143266	14143266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgaactgctcgtgggagcctCttggggacctgggagccccc	15	13	1	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	14143266	14143266	C	G	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.169	p.L57V	0.040	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	46	0	0	43	10	18.87	-	-	-	G	14143266	C	G	14143266	3	3	327	1	0	0	0	0	1	0	0	0	7735	913	32	2	175	2	IL27RA	19	14143266	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	3467562	14143266	44985717	80	35974										
ZNF486	0	genome.wustl.edu	37	chr19	20308257	20308257	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgtgaagaatgtggcaaagtCtttaagtacttctctagctt	9	6	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	20308257	20308257	C	T	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	silent	c.738	p.V246	0.048	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	31	0	0	30	7	18.92	-	-	-	T	20308257	C	T	20308257	2	4	327	1	0	0	0	0	0	0	0	1	18035	900	32	2		2	ZNF486	19	20308257	Silent	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	6164991	20308257	38820726	81	35975										
PSG4	0	genome.wustl.edu	37	chr19	43699378	43699378	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ggttaagacatccttattctCtctggggtttaagttgttga	10	6	2	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	43699378	43699378	C	G	SNP	PSG4	ENST00000405312	human	ensembl	69_37n	-1	known	missense	c.757	p.E253Q	0.005	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG4	HGNC	ENSG00000243137	526	0	0	254	40	13.56	-	-	-	G	43699378	C	G	43699378	3	3	327	1	0	0	0	0	1	0	0	0	12737	922	32	2	514	2	PSG4	19	43699378	Missense_Mutation	SNP	C	TCGA-AO-A0J9-01A-11W-A050-09	23391121	43699378	15429605	82	35976										
OPA3	0	genome.wustl.edu	37	chr19	46057051	46057051	+	Frame_Shift_Del	DEL	G	G	-													0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ccgcccacgatgaagatggtGgcttcgcccagcagctctgc							TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	46057051	46057051	G	-	DEL	OPA3	ENST00000263275	human	ensembl	69_37n	-1	known	frame_shift_del	c.261	p.T88fs	1.000	pfam_OPA3-like	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741	15	0	0	23	18	42.86	-	-	-	-	46057051	G	-	46057051	7	5	327	1	0	1	0	1	0	0	0	0	10945	1335	47	0	687	0	OPA3	19	46057051	Frame_Shift_Del	DEL	G	TCGA-AO-A0J9-01A-11W-A050-09	2357673	46057051	13071932	83	35977										
TRPC4AP	0	genome.wustl.edu	37	chr20	33609154	33609154	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	ccctggaggagggaacacaaTggaggctgacacagccaccg	14	12	0	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	33609154	33609154	T	C	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	missense	c.1057	p.I353V	0.978	NULL	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	59	0	0	44	14	24.14	-	-	-	C	33609154	T	C	33609154	3	2	327	1	0	0	0	0	1	0	0	0	16677	1464	51	5	1380	5	TRPC4AP	20	33609154	Missense_Mutation	SNP	T	TCGA-AO-A0J9-01A-11W-A050-09		33609154	29416366	84	35978										
CSE1L	0	genome.wustl.edu	37	chr20	47686760	47686760	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	aggatctccctgaattttttGaagataatatggaaacttgg	9	5	1	3			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	47686760	47686760	G	A	SNP	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	missense	c.694	p.E232K	1.000	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	199	0	0	82	10	10.87	-	-	-	A	47686760	G	A	47686760	3	1	327	1	0	0	0	0	1	0	0	0	3962	1291	45	2	720	2	CSE1L	20	47686760	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	14077606	47686760	15338760	85	35979										
C20orf43	0	genome.wustl.edu	37	chr20	55043817	55043817	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	tgaaggggccgaagaaggttGagaaggtcagtgatgtgggc	19	4	1	4			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	55043817	55043817	G	C	SNP	C20orf43	ENST00000357348	human	ensembl	69_37n	1	known	missense	c.64	p.E22Q	1.000	NULL	NULL	-	no_errors	C20orf43	HGNC	ENSG00000022277	151	0	0	117	15	11.28	-	-	-	C	55043817	G	C	55043817	3	2	327	1	0	0	0	0	1	0	0	0	2132	1291	45	2	66	2	C20orf43	20	55043817	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09	7357057	55043817	7981703	86	35980										
PI4KA	0	genome.wustl.edu	37	chr22	21159370	21159370	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	gatccggtctgcgtcatgtaGaatcttctggagctccccct	10	13	4	1			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	22	21159370	21159370	G	C	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.1252	p.L418V	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	67	0	0	27	6	17.65	-	-	-	C	21159370	G	C	21159370	3	2	327	1	0	0	0	0	1	0	0	0	11947	933	33	2	5236	2	PI4KA	22	21159370	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		21159370	30145196	87	35981										
TSC22D3	0	genome.wustl.edu	37	chrX	107018376	107018376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.488636363636364	43	1.38466814194584e-16	3.9847963800905	5.09683257918552	3.70678733031674	1.77212516419952e-05	0.000866569205293565	32	catggtctggtcgatgttgcGgttgcagatgccctcgttga	14	9	1	2			TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	X	107018376	107018376	G	A	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	missense	c.274	p.R92C	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	83	0	0	56	14	20	-	-	-	A	107018376	G	A	107018376	3	1	327	1	0	0	0	0	1	0	0	0	16705	1116	39	1	466	1	TSC22D3	23	107018376	Missense_Mutation	SNP	G	TCGA-AO-A0J9-01A-11W-A050-09		107018376	48252184	88	35982										
ZNF683	0	genome.wustl.edu	37	chr1	26688342	26688342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cagagaggccaggggcagctGggtgtgcaccaggccacagg	18	11	0	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	26688342	26688342	G	T	SNP	ZNF683	ENST00000403843	human	ensembl	69_37n	-1	known	missense	c.1375	p.Q459K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083	63	0	0	10	13	56.52	-	-	-	T	26688342	G	T	26688342	3	4	328	1	0	0	0	0	1	0	0	0	18186	1357	47	4	203	4	ZNF683	1	26688342	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09		26688342	222562279	1	35983										
RLF	0	genome.wustl.edu	37	chr1	40701837	40701838	+	Frame_Shift_Ins	INS	-	-	A													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cttttaggacaagaagcctcINSagattctgatgatgatttaa							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	40701837	40701838	-	A	INS	RLF	ENST00000372771	human	ensembl	69_37n	1	known	frame_shift_ins	c.1463_1464	p.D489fs	1.000:0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	106	0	0	45	38	45.78	-	-	-	A	40701838	-	A	40701837	7	5	328	1	0	1	1	0	0	0	0	0	13475	838	29	0	1493	0	RLF	1	40701837	Frame_Shift_Ins	INS	-	TCGA-AO-A0JA-01A-11W-A071-09	14013495	40701837	208548784	2	35984										
FOXE3	0	genome.wustl.edu	37	chr1	47882383	47882384	+	Frame_Shift_Ins	INS	-	-	C													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	acgactgcttcgtcaaggtgINSccccgcgagccgggcaaccc							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	47882383	47882384	-	C	INS	FOXE3	ENST00000335071	human	ensembl	69_37n	1	known	frame_shift_ins	c.396_397	p.R133fs	0.991:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE3	HGNC	ENSG00000186790	25	0	0	10	2	16.67	-	-	-	C	47882384	-	C	47882383	7	5	328	1	0	1	1	0	0	0	0	0	6052	1306	46	0	398	0	FOXE3	1	47882383	Frame_Shift_Ins	INS	-	TCGA-AO-A0JA-01A-11W-A071-09	7180546	47882383	201368238	3	35985										
F5	0	genome.wustl.edu	37	chr1	169511852	169511852	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	agaatatgggctggaatgctCtgctgtggaagaattgagaa	14	4	1	3			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	169511852	169511852	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.2491	p.E831K	0.003	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	383	0	0	428	118	21.53	-	-	-	T	169511852	C	T	169511852	3	4	328	1	0	0	0	0	1	0	0	0	5385	922	32	2	4250	2	F5	1	169511852	Missense_Mutation	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09	121629469	169511852	79738769	4	35986										
IL18RAP	0	genome.wustl.edu	37	chr2	103040327	103040327	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	caaggagtgaagaggaatttGtcttattttgtgatttacca	10	4	1	3			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	2	103040327	103040327	G	C	SNP	IL18RAP	ENST00000264260	human	ensembl	69_37n	1	known	missense	c.127	p.V43L	0.020	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1	-	no_errors	IL18RAP	HGNC	ENSG00000115607	85	0	0	48	20	29.41	-	-	-	C	103040327	G	C	103040327	3	2	328	1	0	0	0	0	1	0	0	0	7702	1377	48	4	133	4	IL18RAP	2	103040327	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09		103040327	140159046	5	35987										
COL7A1	0	genome.wustl.edu	37	chr3	48625779	48625779	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	ggctcccagcgcagcctcagCgagtgctccccgcgctgcac	12	19	1	0			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	48625779	48625779	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.2646	p.S882	0.057	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	13	0	0	1	4	80	-	-	-	A	48625779	C	A	48625779	2	1	328	1	0	0	0	0	0	0	0	1	3734	755	27	3		3	COL7A1	3	48625779	Silent	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		48625779	149396651	6	35988										
MYLK	0	genome.wustl.edu	37	chr3	123444902	123444902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	caggacactggagaaggaggGggccacctccatcacggcaa	14	12	1	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	123444902	123444902	G	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.1540	p.P514S	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	24	0	0	6	12	66.67	-	-	-	A	123444902	G	A	123444902	3	1	328	1	0	0	0	0	1	0	0	0	10128	1232	43	4	4296	4	MYLK	3	123444902	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	74819123	123444902	74577528	7	35989										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0	55	27	32.93	-	-	-	A	178936082	G	A	178936082	3	1	328	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	55491180	178936082	19086348	8	35990										
MUC20	0	genome.wustl.edu	37	chr3	195345533	195345533	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	agagcagacactgcgatgacAacggacgacacagaagtgcc	12	11	0	4			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	195345533	195345533	A	C	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	silent	c.6	p.T2	0.012	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	12	0	0	7	4	36.36	-	-	-	C	195345533	A	C	195345533	2	2	328	1	0	0	0	0	0	0	0	1	10048	145	5	5		5	MUC20	3	195345533	Silent	SNP	A	TCGA-AO-A0JA-01A-11W-A071-09	16409451	195345533	2676897	9	35991										
BMPR1B	0	genome.wustl.edu	37	chr4	96052584	96052584	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cagcaattgcccatcgagatCtgaaaagtaaaaacattctg	7	9	2	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	4	96052584	96052584	C	T	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	silent	c.1087	p.L363	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	297	0	0	206	77	27.21	-	-	-	T	96052584	C	T	96052584	2	4	328	1	0	0	0	0	0	0	0	1	1475	912	32	2		2	BMPR1B	4	96052584	Silent	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		96052584	95101692	10	35992										
COL9A1	0	genome.wustl.edu	37	chr6	70990716	70990717	+	Frame_Shift_Ins	INS	-	-	G													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	atcaacttaccggggggcccINSggggggcccttaggacctcg							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	6	70990716	70990717	-	G	INS	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	frame_shift_ins	c.903_902	p.P306fs	0.025:0.983	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	33	0	0	6	2	25	-	-	-	G	70990717	-	G	70990716	7	5	328	1	0	1	1	0	0	0	0	0	3737	639	23	0	1982	0	COL9A1	6	70990716	Frame_Shift_Ins	INS	-	TCGA-AO-A0JA-01A-11W-A071-09		70990716	100124351	11	35993										
DNAH11	0	genome.wustl.edu	37	chr7	21784508	21784508	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	ggtatagatagtcacatgctGcttcaacagcccctcattta	7	11	3	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	7	21784508	21784508	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.8358	p.L2786	0.836	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	27	0	0	12	8	40	-	-	-	T	21784508	G	T	21784508	2	4	328	1	0	0	0	0	0	0	0	1	4635	1306	46	4		4	DNAH11	7	21784508	Silent	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09		21784508	137354155	12	35994										
CSMD1	0	genome.wustl.edu	37	chr8	2910130	2910130	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	tgaactcgttcccggtaaatGaaccgtttcctggggattct	10	10	1	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	2910130	2910130	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	nonsense	c.7517	p.S2506*	0.987	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	39	0	0	31	15	32.61	-	-	-	T	2910130	G	T	2910130	4	4	328	1	0	0	0	0	0	1	0	0	3976	1294	45	2	3264	2	CSMD1	8	2910130	Nonsense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09		2910130	143453892	13	35995										
CSMD1	0	genome.wustl.edu	37	chr8	3245175	3245175	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	gttcacagggatgcccgggtCcaggcaggaatccgactcaa	13	12	2	0			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	3245175	3245175	C	G	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.2626	p.D876H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	15	0	0	15	9	37.5	-	-	-	G	3245175	C	G	3245175	3	3	328	1	0	0	0	0	1	0	0	0	3976	855	30	2	8283	2	CSMD1	8	3245175	Missense_Mutation	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09	335045	3245175	143118847	14	35996										
PTEN	0	genome.wustl.edu	37	chr10	89692780	89692780	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	tttaccacagttgcacaataTccttttgaagaccataaccc	4	12	0	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	10	89692780	89692780	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.264	p.Y88*	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	240	0	0	77	86	52.76	-	-	-	A	89692780	T	A	89692780	4	1	328	1	0	0	0	0	0	1	0	0	12818	1442	50	5	282	5	PTEN	10	89692780	Nonsense_Mutation	SNP	T	TCGA-AO-A0JA-01A-11W-A071-09		89692780	45841967	15	35997										
MUC5B	0	genome.wustl.edu	37	chr11	1266662	1266662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	acccagcaagacccgcacctCgaccctgctgcccagcagcc	8	21	0	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	1266662	1266662	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8561	p.S2854W	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	49	0	0	18	7	28	-	-	-	G	1266662	C	G	1266662	3	3	328	1	0	0	0	0	1	0	0	0	10051	893	31	3	8683	3	MUC5B	11	1266662	Missense_Mutation	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		1266662	133739854	16	35998										
MICALCL	0	genome.wustl.edu	37	chr11	12316344	12316345	+	In_Frame_Ins	INS	-	-	CTC													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cacctccctgcgccaggcagINSctcctcctcctcctcctcct							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	12316344	12316345	-	CTC	INS	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	in_frame_ins	c.1366_1367	p.460in_frame_insP	0.004:0.006	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	106	0	0	75	10	11.76	-	-	-	CTC	12316345	-	CTC	12316344	7	5	328	1	0	1	1	0	0	0	0	0	9643	971	34	0	1372	0	MICALCL	11	12316344	In_Frame_Ins	INS	-	TCGA-AO-A0JA-01A-11W-A071-09	11049682	12316344	122690172	17	35999										
CPT1A	0	genome.wustl.edu	37	chr11	68574941	68574941	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	ggacacgcaattaccatccaGatcttggtggcacgactcat	9	12	2	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	68574941	68574941	G	A	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	silent	c.447	p.I149	0.983	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	16	0	0	8	6	42.86	-	-	-	A	68574941	G	A	68574941	2	1	328	1	0	0	0	0	0	0	0	1	3861	932	33	2		2	CPT1A	11	68574941	Silent	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	56258597	68574941	66431575	18	36000										
NUMA1	0	genome.wustl.edu	37	chr11	71717272	71717272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cagaccgcgtgctgtagaacGatgagttggcgctgtctggc	15	10	1	3			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	71717272	71717272	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.5501	p.S1834L	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	32	0	0	19	4	17.39	-	-	-	A	71717272	G	A	71717272	3	1	328	1	0	0	0	0	1	0	0	0	10823	1059	37	1	870	1	NUMA1	11	71717272	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	3142331	71717272	63289244	19	36001										
EXPH5	0	genome.wustl.edu	37	chr11	108383532	108383532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	tggagaacactgtagtagatGgaaccacaggagcatcaagg	13	7	1	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	108383532	108383532	G	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.2702	p.P901L	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	275	1	0.36	121	82	40.2	-	-	-	A	108383532	G	A	108383532	3	1	328	1	0	0	0	0	1	0	0	0	5359	1348	47	4	3271	4	EXPH5	11	108383532	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	36666260	108383532	26622984	20	36002										
ITPR2	0	genome.wustl.edu	37	chr12	26749818	26749818	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	agcttttgccaggcttacctCagggatgcagtcgtcatggg	13	10	2	0			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	26749818	26749818	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.4252	p.E1418K	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	239	0	0	178	55	23.5	-	-	-	T	26749818	C	T	26749818	3	4	328	1	0	0	0	0	1	0	0	0	7975	835	29	2	3961	2	ITPR2	12	26749818	Missense_Mutation	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		26749818	107102077	21	36003										
EID3	0	genome.wustl.edu	37	chr12	104698208	104698208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	catcctggatggtaaaagctGagacattccattttgttttt	8	7	0	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	104698208	104698208	G	A	SNP	EID3	ENST00000527879	human	ensembl	69_37n	1	known	missense	c.496	p.E166K	0.002	pfam_Nse4	pfam_Nse4	-	no_errors	EID3	HGNC	ENSG00000255150	222	0	0	112	36	24.32	-	-	-	A	104698208	G	A	104698208	3	1	328	1	0	0	0	0	1	0	0	0	5024	1291	45	2	498	2	EID3	12	104698208	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	77948390	104698208	29153687	22	36004										
GPS2	0	genome.wustl.edu	37	chr17	7217872	7217875	+	Frame_Shift_Del	DEL	CTTC	CTTC	-													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	tttcttccttctctcctgttCttccttcatcttctgttcca							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	CTTC	CTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	17	7217872	7217875	CTTC	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_del	c.139_136	p.E46fs	1.000:0.999:1.000:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	150	0	0	29	17	36.96	-	-	-	-	7217875	CTTC	-	7217872	7	5	328	1	0	1	0	1	0	0	0	0	6784	922	32	0	880	0	GPS2	17	7217872	Frame_Shift_Del	DEL	CTTC	TCGA-AO-A0JA-01A-11W-A071-09		7217872	73977338	23	36005										
OR7G1	0	genome.wustl.edu	37	chr19	9225564	9225564	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	ttcttcatctccttatttctCaggctgtagatgaaggggtt	9	8	4	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	19	9225564	9225564	C	T	SNP	OR7G1	ENST00000293614	human	ensembl	69_37n	-1	known	silent	c.876	p.L292	1.000	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807	256	0	0	169	74	30.45	-	-	-	T	9225564	C	T	9225564	2	4	328	1	0	0	0	0	0	0	0	1	11295	813	29	2		2	OR7G1	19	9225564	Silent	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		9225564	49903419	24	36006										
GDF5	0	genome.wustl.edu	37	chr20	34025503	34025504	+	Frame_Shift_Ins	INS	-	-	C													0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cctggcattggcattggtggINScccccccaccatagctgtga							TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	20	34025503	34025504	-	C	INS	GDF5	ENST00000374369	human	ensembl	69_37n	-1	known	frame_shift_ins	c.206_205	p.A69fs	0.007:0.002	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965	23	0	0	15	2	11.76	-	-	-	C	34025504	-	C	34025503	7	5	328	1	0	1	1	0	0	0	0	0	6368	1203	42	0	1307	0	GDF5	20	34025503	Frame_Shift_Ins	INS	-	TCGA-AO-A0JA-01A-11W-A071-09		34025503	29000017	25	36007										
MAP3K15	0	genome.wustl.edu	37	chrX	19478185	19478185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	tatccatgcggagcttgatcCgagctagctccttcgccagt	10	13	0	1			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	19478185	19478185	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.806	p.R269Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	81	0	0	77	31	28.44	-	-	-	T	19478185	C	T	19478185	3	4	328	1	0	0	0	0	1	0	0	0	9320	652	23	1	3235	1	MAP3K15	23	19478185	Missense_Mutation	SNP	C	TCGA-AO-A0JA-01A-11W-A071-09		19478185	135792375	26	36008										
MORC4	0	genome.wustl.edu	37	chrX	106229353	106229353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.259259259259259	7	0.0092146171769174	3.68032786885246	0	4.68405365126677	0.0013986013986014	0.0333617601910285	5	cgtcctttcctagccgcatgGagcctgacttgaaaccatta	8	13	0	2			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	106229353	106229353	G	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	missense	c.386	p.S129Y	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	398	0	0	210	101	32.48	-	-	-	T	106229353	G	T	106229353	3	4	328	1	0	0	0	0	1	0	0	0	9776	1174	41	2	2483	2	MORC4	23	106229353	Missense_Mutation	SNP	G	TCGA-AO-A0JA-01A-11W-A071-09	86751168	106229353	49041207	27	36009										
ZNF687	0	genome.wustl.edu	37	chr1	151263360	151263361	+	Frame_Shift_Ins	INS	-	-	G													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ctcatgatggggttgagggtINSggaggatggtgcccagcagt							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	151263360	151263361	-	G	INS	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	frame_shift_ins	c.3389_3390	p.E1131fs	1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	31	0	0	14	8	36.36	-	-	-	G	151263361	-	G	151263360	7	5	329	1	0	1	1	0	0	0	0	0	18188	1696	59	0	3419	0	ZNF687	1	151263360	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09		151263360	97987261	1	36010										
HRNR	0	genome.wustl.edu	37	chr1	152186443	152186443	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gaccgaccggagccagacccAtgtcggccgtagctgggaga	15	13	0	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	152186443	152186443	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.7662	p.H2554	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	10	0	0	3	2	40	-	-	-	G	152186443	A	G	152186443	2	3	329	1	0	0	0	0	0	0	0	1	7410	214	8	5		5	HRNR	1	152186443	Silent	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	923083	152186443	97064178	2	36011										
LCE1F	0	genome.wustl.edu	37	chr1	152749130	152749130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	acagaccccagagctctgacTgctgcagccagccctcagcg	10	17	2	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	152749130	152749130	T	C	SNP	LCE1F	ENST00000334371	human	ensembl	69_37n	1	known	missense	c.283	p.C95R	0.991	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386	67	0	0	55	20	26.67	-	-	-	C	152749130	T	C	152749130	3	2	329	1	0	0	0	0	1	0	0	0	8718	1580	55	5	285	5	LCE1F	1	152749130	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	562687	152749130	96501491	3	36012										
SPTA1	0	genome.wustl.edu	37	chr1	158653171	158653171	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atacatataccttcgtttctTcgtgggcagaatgacccatg	8	10	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	158653171	158653171	T	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.380	p.E127G	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	140	0	0	149	86	36.44	-	-	-	C	158653171	T	C	158653171	3	2	329	1	0	0	0	0	1	0	0	0	15207	1783	62	5	7079	5	SPTA1	1	158653171	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	5904041	158653171	90597450	4	36013										
DENND1B	0	genome.wustl.edu	37	chr1	197481050	197481050	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tcatagagataagcagaagcTtcttcaccatcttcagaaga	7	9	5	4			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	197481050	197481050	T	G	SNP	DENND1B	ENST00000391979	human	ensembl	69_37n	-1	putative	missense	c.543	p.E181D	0.950	NULL	NULL	-	no_start_codon	DENND1B	HGNC	ENSG00000213047	107	0	0	136	62	31.31	-	-	-	G	197481050	T	G	197481050	3	3	329	1	0	0	0	0	1	0	0	0	4463	1606	56	5	712	5	DENND1B	1	197481050	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	38827879	197481050	51769571	5	36014										
SHISA4	0	genome.wustl.edu	37	chr1	201858660	201858660	+	Frame_Shift_Del	DEL	G	G	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cgagttcttcaccttctgctGcgggacctgctaccatcggt							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	201858660	201858660	G	-	DEL	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	frame_shift_del	c.161	p.C54fs	1.000	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	84	0	0	80	57	41.01	-	-	-	-	201858660	G	-	201858660	7	5	329	1	0	1	0	1	0	0	0	0	14371	1319	46	0	167	0	SHISA4	1	201858660	Frame_Shift_Del	DEL	G	TCGA-AO-A0JB-01A-11W-A071-09	4377610	201858660	47391961	6	36015										
USH2A	0	genome.wustl.edu	37	chr1	215848573	215848573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tccatggttgcaaacctgtgTcattatacataaatgtattc	6	8	1	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	215848573	215848573	T	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.12680	p.D4227G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	230	0	0	302	113	27.23	-	-	-	C	215848573	T	C	215848573	3	2	329	1	0	0	0	0	1	0	0	0	17133	1667	58	5	2968	5	USH2A	1	215848573	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	13989913	215848573	33402048	7	36016										
OBSCN	0	genome.wustl.edu	37	chr1	228492905	228492905	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tatgttgcagtgtgagctgaGcaaggtggcccctgttgagt	15	7	0	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	1	228492905	228492905	G	C	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	missense	c.4379	p.S1460T	1.000	pfam_Ig_I-set,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	147	0	0	75	36	32.43	-	-	-	C	228492905	G	C	228492905	3	2	329	1	0	0	0	0	1	0	0	0	10885	986	34	4		4	OBSCN	1	228492905	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	12644332	228492905	20757716	8	36017										
C2orf16	0	genome.wustl.edu	37	chr2	27803116	27803116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tgggccttcccagtcccctgCtcctgtacaagtctacatca	7	16	2	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	27803116	27803116	C	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.3677	p.A1226D	0.156	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	259	0	0	168	93	35.63	-	-	-	A	27803116	C	A	27803116	3	1	329	1	0	0	0	0	1	0	0	0	2177	797	28	4	3679	4	C2orf16	2	27803116	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		27803116	215396257	9	36018										
CEP68	0	genome.wustl.edu	37	chr2	65299282	65299282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aagcaccctcaaatcacctaCtaatgtctcccccaactgcc	3	18	3	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	65299282	65299282	C	T	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	missense	c.1052	p.T351I	0.821	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	134	0	0	58	85	59.03	-	-	-	T	65299282	C	T	65299282	3	4	329	1	0	0	0	0	1	0	0	0	3287	565	20	4	1058	4	CEP68	2	65299282	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	37496166	65299282	177900091	10	36019										
LOXL3	0	genome.wustl.edu	37	chr2	74762843	74762843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tccccctatttgcacctcgaCtcgcccctcatgttggctgc	7	18	1	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	74762843	74762843	C	T	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.1288	p.V430I	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	187	0	0	40	27	40.3	-	-	-	T	74762843	C	T	74762843	3	4	329	1	0	0	0	0	1	0	0	0	8967	565	20	4	1001	4	LOXL3	2	74762843	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	9463561	74762843	168436530	11	36020										
GPAT2	0	genome.wustl.edu	37	chr2	96689096	96689096	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gcctctccgaagtcatcactGtcactatcagtaaagtcccc	6	15	5	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	96689096	96689096	G	A	SNP	GPAT2	ENST00000359548	human	ensembl	69_37n	-1	known	silent	c.1989	p.D663	1.000	NULL	smart_Acyltransferase	-	no_errors	GPAT2	HGNC	ENSG00000186281	33	0	0	9	6	40	-	-	-	A	96689096	G	A	96689096	2	1	329	1	0	0	0	0	0	0	0	1	6639	1368	48	4		4	GPAT2	2	96689096	Silent	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	21926253	96689096	146510277	12	36021										
SCN3A	0	genome.wustl.edu	37	chr2	165948952	165948952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tttccaccatcatggtgaccAtgttgaggcagatgaggatc	11	9	1	4			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	165948952	165948952	A	C	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.4619	p.M1540R	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	84	0	0	154	39	20.21	-	-	-	C	165948952	A	C	165948952	3	2	329	1	0	0	0	0	1	0	0	0	14006	217	8	5	1391	5	SCN3A	2	165948952	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	69259856	165948952	77250421	13	36022										
HOXD3	0	genome.wustl.edu	37	chr2	177034213	177034213	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	acaaccccctcctccaccacCgaccctgcccccatcttcac	2	25	2	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	177034213	177034213	C	G	SNP	HOXD3	ENST00000249440	human	ensembl	69_37n	1	known	missense	c.371	p.P124R	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652	84	0	0	52	16	23.53	-	-	-	G	177034213	C	G	177034213	3	3	329	1	0	0	0	0	1	0	0	0	7374	652	23	3	373	3	HOXD3	2	177034213	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	11085261	177034213	66165160	14	36023										
COL6A3	0	genome.wustl.edu	37	chr2	238283233	238283233	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tctgtgatgtcagcgttcccGatgccaatgccaatgggcac	11	12	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	2	238283233	238283233	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.3501	p.I1167	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	68	0	0	8	23	74.19	-	-	-	A	238283233	G	A	238283233	2	1	329	1	0	0	0	0	0	0	0	1	3731	1048	37	1		1	COL6A3	2	238283233	Silent	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	61249020	238283233	4916140	15	36024										
C3orf30	0	genome.wustl.edu	37	chr3	118865046	118865046	+	Frame_Shift_Del	DEL	C	C	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cgcggcaggaaatggaagagCctccgcaagaggctctggct							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	3	118865046	118865046	C	-	DEL	C3orf30	ENST00000295622	human	ensembl	69_37n	1	known	frame_shift_del	c.10	p.P4fs	0.001	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	29	0	0	21	7	25	-	-	-	-	118865046	C	-	118865046	7	5	329	1	0	1	0	1	0	0	0	0	2240	739	26	0	12	0	C3orf30	3	118865046	Frame_Shift_Del	DEL	C	TCGA-AO-A0JB-01A-11W-A071-09		118865046	79157384	16	36025										
DNAJB8	0	genome.wustl.edu	37	chr3	128181749	128181749	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	attgaatgggctgtcccagaActcaaaggagaaagggtcca	12	8	1	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	3	128181749	128181749	A	C	SNP	DNAJB8	ENST00000319153	human	ensembl	69_37n	-1	known	missense	c.340	p.F114V	0.899	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB8	HGNC	ENSG00000179407	121	0	0	13	32	71.11	-	-	-	C	128181749	A	C	128181749	3	2	329	1	0	0	0	0	1	0	0	0	4661	43	2	5	362	5	DNAJB8	3	128181749	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	9316703	128181749	69840681	17	36026										
DBR1	0	genome.wustl.edu	37	chr3	137890542	137890542	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cttacacctcggtattttacCacaccagccaaacctaaaca	3	15	0	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	3	137890542	137890542	C	A	SNP	DBR1	ENST00000260803	human	ensembl	69_37n	-1	known	silent	c.336	p.V112	0.795	pfam_Metallo_PEstase_dom	pfam_DBR1_C,pfam_Metallo_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231	103	0	0	77	40	34.19	-	-	-	A	137890542	C	A	137890542	2	1	329	1	0	0	0	0	0	0	0	1	4289	581	21	4		4	DBR1	3	137890542	Silent	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	9708793	137890542	60131888	18	36027										
KCNIP4	0	genome.wustl.edu	37	chr4	20734354	20734354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	agcatcttctttgaggacagGatatgtacatttacccatca	7	9	3	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	4	20734354	20734354	G	T	SNP	KCNIP4	ENST00000382150	human	ensembl	69_37n	-1	known	missense	c.529	p.P177T	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	KCNIP4	HGNC	ENSG00000185774	58	0	0	27	26	49.06	-	-	-	T	20734354	G	T	20734354	3	4	329	1	0	0	0	0	1	0	0	0	8096	1174	41	2	172	2	KCNIP4	4	20734354	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09		20734354	170419922	19	36028										
TRAM1L1	0	genome.wustl.edu	37	chr4	118005694	118005694	+	Missense_Mutation	SNP	C	C	A													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atttacatttccagtaagggCatcaggattccgattctgcg							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	4	118005694	118005694	C	A	SNP	TRAM1L1	ENST00000310754	human	ensembl	69_37n	-1	known	missense	c.856	p.A286S	0.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599	122	0	0	96	37	27.82	-	-	-	A	118005694	C	A	118005694	3	1	329	1	0	0	0	0	1	0	0	0	16548	710	25	4	257	4	TRAM1L1	4	118005694	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	97271340	118005694	73148582	20	36029	288	2								
TRAM1L1	0	genome.wustl.edu	37	chr4	118005695	118005695	+	Silent	SNP	A	A	G													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tttacatttccagtaagggcAtcaggattccgattctgcga							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	4	118005695	118005695	A	G	SNP	TRAM1L1	ENST00000310754	human	ensembl	69_37n	-1	known	silent	c.855	p.D285	0.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599	121	0	0	98	38	27.94	-	-	-	G	118005695	A	G	118005695	2	3	329	1	0	0	0	0	0	0	0	1	16548	214	8	5		5	TRAM1L1	4	118005695	Silent	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	1	118005695	73148581	21	36030	288	2								
GCM2	0	genome.wustl.edu	37	chr6	10877583	10877583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gctgtagatgaagcgcacatAgccgtcaggccactctcgga	12	12	2	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	10877583	10877583	A	C	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	missense	c.133	p.Y45D	1.000	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	63	0	0	35	29	45.31	-	-	-	C	10877583	A	C	10877583	3	2	329	1	0	0	0	0	1	0	0	0	6348	420	15	5	1403	5	GCM2	6	10877583	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09		10877583	160237484	22	36031										
BTN3A3	0	genome.wustl.edu	37	chr6	26443819	26443819	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atagatgaaaatggcaagttCcctggctttccttctgctca	8	10	2	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	26443819	26443819	C	A	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	missense	c.17	p.S6Y	0.002	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	93	0	0	67	34	33.66	-	-	-	A	26443819	C	A	26443819	3	1	329	1	0	0	0	0	1	0	0	0	1573	855	30	2	19	2	BTN3A3	6	26443819	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	15566236	26443819	144671248	23	36032										
TNXB	0	genome.wustl.edu	37	chr6	32029331	32029331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ggccgcccgtccctgtccttGtactgcacggtgaaggagtc	13	14	0	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	32029331	32029331	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.7335	p.Y2445	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	50	0	0	42	13	23.64	-	-	-	A	32029331	G	A	32029331	2	1	329	1	0	0	0	0	0	0	0	1	16441	1372	48	4		4	TNXB	6	32029331	Silent	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	5585512	32029331	139085736	24	36033										
KCNK5	0	genome.wustl.edu	37	chr6	39162506	39162506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aaacacagaagaggcgaccgGcgggggtcttgggagccaca	16	10	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	39162506	39162506	G	C	SNP	KCNK5	ENST00000359534	human	ensembl	69_37n	-1	known	missense	c.329	p.A110G	0.093	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626	114	0	0	40	6	13.04	-	-	-	C	39162506	G	C	39162506	3	2	329	1	0	0	0	0	1	0	0	0	8123	1203	42	4	1182	4	KCNK5	6	39162506	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	7133175	39162506	131952561	25	36034										
DST	0	genome.wustl.edu	37	chr6	56399925	56399925	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gcatgactaacttaccttttGttcttgtatctgggccttta	7	9	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	56399925	56399925	G	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	nonsense	c.16843	p.Q5615*	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	159	0	0	263	84	24.21	-	-	-	A	56399925	G	A	56399925	4	1	329	1	0	0	0	0	0	1	0	0	4818	1386	48	4	6612	4	DST	6	56399925	Nonsense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	17237419	56399925	114715142	26	36035										
FAM135A	0	genome.wustl.edu	37	chr6	71186934	71186934	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cactttagcccccatagaggCcttcatcatcatgttaatgt	6	12	3	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	71186934	71186934	C	A	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	silent	c.441	p.G147	1.000	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	63	0	0	74	40	35.09	-	-	-	A	71186934	C	A	71186934	2	1	329	1	0	0	0	0	0	0	0	1	5488	726	26	4		4	FAM135A	6	71186934	Silent	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	14787009	71186934	99928133	27	36036										
HTR1B	0	genome.wustl.edu	37	chr6	78172741	78172741	+	Frame_Shift_Del	DEL	G	G	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tgcaacaagtgatgtccgacGacagccagaagtcacagacc							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	78172741	78172741	G	-	DEL	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	frame_shift_del	c.380	p.S127fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	37	0	0	27	6	18.18	-	-	-	-	78172741	G	-	78172741	7	5	329	1	0	1	0	1	0	0	0	0	7491	1059	37	0	796	0	HTR1B	6	78172741	Frame_Shift_Del	DEL	G	TCGA-AO-A0JB-01A-11W-A071-09	6985807	78172741	92942326	28	36037										
C6orf70	0	genome.wustl.edu	37	chr6	170155510	170155510	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cgtggttccagtggacaagtTttccagaggtttggcttttg	13	7	0	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	6	170155510	170155510	T	G	SNP	C6orf70	ENST00000366773	human	ensembl	69_37n	1	known	missense	c.307	p.F103V	0.003	NULL	NULL	-	no_errors	C6orf70	HGNC	ENSG00000130023	97	0	0	74	40	35.09	-	-	-	G	170155510	T	G	170155510	3	3	329	1	0	0	0	0	1	0	0	0	2392	1841	64	5	317	5	C6orf70	6	170155510	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	91982769	170155510	959557	29	36038										
AEBP1	0	genome.wustl.edu	37	chr7	44150599	44150599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gtttcatccgcatctacccaCtcacctggaatggcagcctg	8	15	3	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	7	44150599	44150599	C	A	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.1573	p.L525I	0.997	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	28	0	0	4	4	50	-	-	-	A	44150599	C	A	44150599	3	1	329	1	0	0	0	0	1	0	0	0	349	565	20	4	1623	4	AEBP1	7	44150599	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		44150599	114988064	30	36039										
CCDC132	0	genome.wustl.edu	37	chr7	92952973	92952976	+	Frame_Shift_Del	DEL	ATTC	ATTC	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	agccaattgcctttgatgttAttcatttcatgtctcaacta							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	ATTC	ATTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	7	92952973	92952976	ATTC	-	DEL	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	frame_shift_del	c.1906_1909	p.H637fs	1.000:1.000:1.000:1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	51	0	0	88	11	11.11	-	-	-	-	92952976	ATTC	-	92952973	7	5	329	1	0	1	0	1	0	0	0	0	2792	449	16	0	2030	0	CCDC132	7	92952973	Frame_Shift_Del	DEL	ATTC	TCGA-AO-A0JB-01A-11W-A071-09	48802374	92952973	66185690	31	36040										
CSMD3	0	genome.wustl.edu	37	chr8	113702256	113702256	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atataagggtgtaccaggatCaccacaactttctttctcaa	6	10	3	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	8	113702256	113702256	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.1996	p.D666Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	229	0	0	314	95	23.23	-	-	-	A	113702256	C	A	113702256	3	1	329	1	0	0	0	0	1	0	0	0	3978	826	29	2	9359	2	CSMD3	8	113702256	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		113702256	32661766	32	36041										
ATAD2	0	genome.wustl.edu	37	chr8	124351573	124351573	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gctttcttttttgatataggAggcttagcagcttgttttag	10	5	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	8	124351573	124351573	A	C	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	silent	c.2832	p.P944	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	61	0	0	70	18	20.45	-	-	-	C	124351573	A	C	124351573	2	2	329	1	0	0	0	0	0	0	0	1	1075	291	11	5		5	ATAD2	8	124351573	Silent	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	10649317	124351573	22012449	33	36042										
EPB41L4B	0	genome.wustl.edu	37	chr9	111938882	111938882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tgtaaatggtctgcactgtgGagacggtctctgtcaaaggc	13	8	3	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	9	111938882	111938882	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	69_37n	-1	known	missense	c.2582	p.S861F	0.981	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4B	HGNC	ENSG00000095203	53	0	0	73	10	12.05	-	-	-	A	111938882	G	A	111938882	3	1	329	1	0	0	0	0	1	0	0	0	5193	1174	41	2	128	2	EPB41L4B	9	111938882	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09		111938882	29274549	34	36043										
TLR4	0	genome.wustl.edu	37	chr9	120475992	120475992	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tcaggtactaaatatgagccAcaacaacttcttttcattgg	6	9	3	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	9	120475992	120475992	A	G	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.1586	p.H529R	1.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	98	0	0	84	44	34.38	-	-	-	G	120475992	A	G	120475992	3	3	329	1	0	0	0	0	1	0	0	0	16048	159	6	5	1596	5	TLR4	9	120475992	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	8537110	120475992	20737439	35	36044										
HERC4	0	genome.wustl.edu	37	chr10	69684843	69684843	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	actagttagaaatacttacaCagaaactgtttcttcttttc	4	8	2	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	10	69684843	69684843	C	A	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	silent	c.2964	p.L988	0.981	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	78	0	0	46	26	36.11	-	-	-	A	69684843	C	A	69684843	2	1	329	1	0	0	0	0	0	0	0	1	7111	492	17	4		4	HERC4	10	69684843	Silent	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		69684843	65849904	36	36045										
LIPN	0	genome.wustl.edu	37	chr10	90537956	90537956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gggcctcgatgcccctcaacGgatgtacagtgaaatcatag	11	11	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	10	90537956	90537956	G	A	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.1154	p.R385Q	0.002	NULL	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	37	0	0	35	12	25.53	-	-	-	A	90537956	G	A	90537956	3	1	329	1	0	0	0	0	1	0	0	0	8884	1116	39	1	1188	1	LIPN	10	90537956	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	20853113	90537956	44996791	37	36046										
UCP2	0	genome.wustl.edu	37	chr11	73689330	73689330	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tttagcagtatccagaggaaAggtgatgagatctgcgatgc	13	6	1	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	11	73689330	73689330	A	T	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	missense	c.94	p.F32I	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	95	0	0	54	57	50.89	-	-	-	T	73689330	A	T	73689330	3	4	329	1	0	0	0	0	1	0	0	0	17028	72	3	5	859	5	UCP2	11	73689330	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09		73689330	61317186	38	36047										
SIK2	0	genome.wustl.edu	37	chr11	111575768	111575768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tttatttcttgttggtggagCgcctgaaatcacatcggagc	11	8	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	11	111575768	111575768	C	T	SNP	SIK2	ENST00000304987	human	ensembl	69_37n	1	known	missense	c.1006	p.R336C	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145	114	0	0	97	42	30.22	-	-	-	T	111575768	C	T	111575768	3	4	329	1	0	0	0	0	1	0	0	0	14407	768	27	1	1036	1	SIK2	11	111575768	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	37886438	111575768	23430748	39	36048										
GLB1L3	0	genome.wustl.edu	37	chr11	134151330	134151330	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atttgacttctctgggaaccTggacctggagtatgtggtgt	13	7	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	11	134151330	134151330	T	G	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.422	p.L141R	1.000	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	136	0	0	72	37	33.94	-	-	-	G	134151330	T	G	134151330	3	3	329	1	0	0	0	0	1	0	0	0	6482	1580	55	5	436	5	GLB1L3	11	134151330	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09	22575562	134151330	855186	40	36049										
PZP	0	genome.wustl.edu	37	chr12	9307212	9307212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	actctttgggaaccactgacCtgggtggaggagaaaccacc	12	11	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	12	9307212	9307212	C	A	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.3774	p.Q1258H	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	45	0	0	37	23	38.33	-	-	-	A	9307212	C	A	9307212	3	1	329	1	0	0	0	0	1	0	0	0	12952	695	24	4	706	4	PZP	12	9307212	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		9307212	124544683	41	36050										
WIF1	0	genome.wustl.edu	37	chr12	65514265	65514265	+	Frame_Shift_Del	DEL	G	G	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aatagctggcattctctgttGtgcttttctgaaatcatgtg							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	12	65514265	65514265	G	-	DEL	WIF1	ENST00000286574	human	ensembl	69_37n	-1	known	frame_shift_del	c.220	p.Q74fs	1.000	pfam_WIF,smart_WIF,pfscan_WIF,prints_Wnt-inh	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EGF-like,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	58	0	0	63	41	38.68	-	-	-	-	65514265	G	-	65514265	7	5	329	1	0	1	0	1	0	0	0	0	17463	1386	48	0	955	0	WIF1	12	65514265	Frame_Shift_Del	DEL	G	TCGA-AO-A0JB-01A-11W-A071-09	56207053	65514265	68337630	42	36051										
COL4A1	0	genome.wustl.edu	37	chr13	110859238	110859238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tccaggttcacctttttggcCctgaaagaattcgagagaca	9	10	1	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	13	110859238	110859238	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.781	p.G261S	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	181	0	0	240	37	13.31	-	-	-	T	110859238	C	T	110859238	3	4	329	1	0	0	0	0	1	0	0	0	3719	637	22	4	4384	4	COL4A1	13	110859238	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		110859238	4310640	43	36052										
AP1G2	0	genome.wustl.edu	37	chr14	24035107	24035107	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tgcccagcaggatgcctgggGtcagcgtcggggaagtgaat	17	9	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	14	24035107	24035107	G	T	SNP	AP1G2	ENST00000535852	human	ensembl	69_37n	-1	known	missense	c.128	p.T43N	1.000	pfam_Clathrin/coatomer_adapt-like_N,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	60	0	0	19	9	32.14	-	-	-	T	24035107	G	T	24035107	3	4	329	1	0	0	0	0	1	0	0	0	734	1276	44	4		4	AP1G2	14	24035107	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09		24035107	83314433	44	36053										
SERPINA4	0	genome.wustl.edu	37	chr14	95030369	95030369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gcacaatccagcttatcaacGaccacgtcaagaaggaaact	7	12	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	14	95030369	95030369	G	A	SNP	SERPINA4	ENST00000298841	human	ensembl	69_37n	1	known	missense	c.550	p.D184N	0.006	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	294	0	0	137	68	33.17	-	-	-	A	95030369	G	A	95030369	3	1	329	1	0	0	0	0	1	0	0	0	14179	1058	37	1	552	1	SERPINA4	14	95030369	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	70995262	95030369	12319171	45	36054										
MGA	0	genome.wustl.edu	37	chr15	42034982	42034982	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cctcaagtgtttttagaaaaTactactgctgtgacacctat	6	9	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	15	42034982	42034982	T	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.4824	p.N1608K	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	138	0	0	118	44	27.16	-	-	-	A	42034982	T	A	42034982	3	1	329	1	0	0	0	0	1	0	0	0	9611	1403	49	5	4878	5	MGA	15	42034982	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09		42034982	60496410	46	36055										
UBR1	0	genome.wustl.edu	37	chr15	43347026	43347026	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ttattgttcctgtccaagtaCtcaggtaaaacttctagcag	7	9	2	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	15	43347026	43347026	C	A	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.1353	p.E451D	0.998	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	296	0	0	170	115	40.35	-	-	-	A	43347026	C	A	43347026	3	1	329	1	0	0	0	0	1	0	0	0	16998	564	20	4	4040	4	UBR1	15	43347026	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	1312044	43347026	59184366	47	36056										
MTHFS	0	genome.wustl.edu	37	chr15	80181580	80181580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aaccggtaccgagggatgaaGcagattttgcctcgttggaa	13	8	0	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	15	80181580	80181580	G	A	SNP	MTHFS	ENST00000258874	human	ensembl	69_37n	-1	known	silent	c.234	p.C78	0.998	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	-	no_errors	MTHFS	HGNC	ENSG00000136371	250	1	0.4	90	394	81.24	-	-	-	A	80181580	G	A	80181580	2	1	329	1	0	0	0	0	0	0	0	1	10004	963	34	4		4	MTHFS	15	80181580	Silent	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	36834554	80181580	22349812	48	36057										
NUP93	0	genome.wustl.edu	37	chr16	56782315	56782315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cgtaccctaacacgcacgtcCcaggagacggcagatgtcaa	10	14	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	16	56782315	56782315	C	T	SNP	NUP93	ENST00000566678	human	ensembl	69_37n	1	putative	missense	c.55	p.P19S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP93	HGNC	ENSG00000102900	36	0	0	20	13	39.39	-	-	-	T	56782315	C	T	56782315	3	4	329	1	0	0	0	0	1	0	0	0	10845	610	22	4	158	4	NUP93	16	56782315	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09		56782315	33572438	49	36058										
ZNF319	0	genome.wustl.edu	37	chr16	58031098	58031098	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tgtgcgccggtggcgcatcaGtgcgtactgctgcttgaagc	15	11	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	16	58031098	58031098	G	C	SNP	ZNF319	ENST00000299237	human	ensembl	69_37n	-1	known	missense	c.1072	p.L358V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188	19	0	0	1	7	87.5	-	-	-	C	58031098	G	C	58031098	3	2	329	1	0	0	0	0	1	0	0	0	17933	1020	36	4	680	4	ZNF319	16	58031098	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	1248783	58031098	32323655	50	36059										
B3GNT9	0	genome.wustl.edu	37	chr16	67183643	67183643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	caccagcaagcaggtcttgcGccgggtcccgcggcgccagg	15	16	1	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	16	67183643	67183643	G	A	SNP	B3GNT9	ENST00000449549	human	ensembl	69_37n	-1	known	missense	c.746	p.A249V	0.000	pfam_Glyco_trans_31,pfam_Fringe-like	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT9	HGNC	ENSG00000237172	29	0	0	4	8	66.67	-	-	-	A	67183643	G	A	67183643	3	1	329	1	0	0	0	0	1	0	0	0	1268	1087	38	1	466	1	B3GNT9	16	67183643	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	9152545	67183643	23171110	51	36060										
SERPINF1	0	genome.wustl.edu	37	chr17	1675177	1675177	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tcttctcagagctgcgcataAaatccagctttgtggcacct	8	12	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	1675177	1675177	A	C	SNP	SERPINF1	ENST00000254722	human	ensembl	69_37n	1	known	missense	c.451	p.K151Q	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386	77	0	0	9	13	59.09	-	-	-	C	1675177	A	C	1675177	3	2	329	1	0	0	0	0	1	0	0	0	14202	15	1	5	465	5	SERPINF1	17	1675177	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09		1675177	79520033	52	36061										
DPH1	0	genome.wustl.edu	37	chr17	1939888	1939888	+	Frame_Shift_Del	DEL	A	A	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ttgtggacatccggatagacActacacacctcctggactct							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	1939888	1939888	A	-	DEL	DPH1	ENST00000263083	human	ensembl	69_37n	1	known	frame_shift_del	c.481	p.T161fs	1.000	pfam_DPH1/DPH2,pirsf_eu_DPH1/arc_DPH2,tigrfam_DPH1/DPH2	pfam_DPH1/DPH2,pirsf_eu_DPH1/arc_DPH2,tigrfam_DPH1/DPH2	-	no_errors	DPH1	HGNC	ENSG00000108963	38	0	0	12	15	53.57	-	-	-	-	1939888	A	-	1939888	7	5	329	1	0	1	0	1	0	0	0	0	4754	159	6	0	499	0	DPH1	17	1939888	Frame_Shift_Del	DEL	A	TCGA-AO-A0JB-01A-11W-A071-09	264711	1939888	79255322	53	36062										
KIAA0664	0	genome.wustl.edu	37	chr17	2601712	2601713	+	Frame_Shift_Ins	INS	-	-	C													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cgccacgtaggccgccacgtINScccccccgaagtccttgtag							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	2601712	2601713	-	C	INS	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1325_1324	p.D442fs	1.000:1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	18	0	0	1	2	66.67	-	-	-	C	2601713	-	C	2601712	7	5	329	1	0	1	1	0	0	0	0	0	8241	1667	58	0	2672	0	KIAA0664	17	2601712	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	661824	2601712	78593498	54	36063										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	121	0	0	23	31	57.41	-	-	-	A	7578212	G	A	7578212	4	1	329	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	4976500	7578212	73616998	55	36064										
CUEDC1	0	genome.wustl.edu	37	chr17	55962645	55962645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cctcatagacgccgccgctgCtgccaccgccctccaggttc	9	20	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	55962645	55962645	C	A	SNP	CUEDC1	ENST00000360238	human	ensembl	69_37n	-1	known	missense	c.281	p.S94I	0.312	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	CUEDC1	HGNC	ENSG00000180891	16	0	0	11	10	47.62	-	-	-	A	55962645	C	A	55962645	3	1	329	1	0	0	0	0	1	0	0	0	4083	797	28	4	915	4	CUEDC1	17	55962645	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	48384433	55962645	25232565	56	36065										
LPO	0	genome.wustl.edu	37	chr17	56342263	56342263	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tccgcctggatgagaattatCagccatgggggccagaacca	12	11	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	17	56342263	56342263	C	G	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	missense	c.1447	p.Q483E	0.993	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	103	0	0	113	52	31.52	-	-	-	G	56342263	C	G	56342263	3	3	329	1	0	0	0	0	1	0	0	0	8988	827	29	2	1481	2	LPO	17	56342263	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	379618	56342263	24852947	57	36066										
CDH19	0	genome.wustl.edu	37	chr18	64239322	64239322	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cacacccagccacgcttcacTctcaaatgagatcgcactgg	7	16	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	18	64239322	64239322	T	G	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	missense	c.120	p.R40S	0.442	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	77	0	0	45	84	65.12	-	-	-	G	64239322	T	G	64239322	3	3	329	1	0	0	0	0	1	0	0	0	3133	1548	54	5	2242	5	CDH19	18	64239322	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09		64239322	13837926	58	36067										
ZNF407	0	genome.wustl.edu	37	chr18	72343892	72343892	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aaatgttcactcaaaaccaaGaacttctaaatcaatagcaa	3	9	4	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	18	72343892	72343892	G	C	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.917	p.R306T	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	184	0	0	98	22	18.18	-	-	-	C	72343892	G	C	72343892	3	2	329	1	0	0	0	0	1	0	0	0	17983	942	33	2	919	2	ZNF407	18	72343892	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	8104570	72343892	5733356	59	36068										
ZNF737	0	genome.wustl.edu	37	chr19	20728192	20728192	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	atgaattatcttatgtgtagTaaggttagaggagcgcttaa	11	3	1	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	20728192	20728192	T	C	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	missense	c.817	p.T273A	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	263	1	0.38	241	132	35.39	-	-	-	C	20728192	T	C	20728192	3	2	329	1	0	0	0	0	1	0	0	0	18220	1638	57	5	797	5	ZNF737	19	20728192	Missense_Mutation	SNP	T	TCGA-AO-A0JB-01A-11W-A071-09		20728192	38400791	60	36069										
PSG9	0	genome.wustl.edu	37	chr19	43762251	43762251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tttgggatttgcttgtgcccAtgggacacaggctgggaata	14	7	0	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	43762251	43762251	A	C	SNP	PSG9	ENST00000244293	human	ensembl	69_37n	-1	putative	missense	c.1067	p.M356R	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG9	HGNC	ENSG00000183668	175	0	0	89	73	45.06	-	-	-	C	43762251	A	C	43762251	3	2	329	1	0	0	0	0	1	0	0	0	12742	232	8	5		5	PSG9	19	43762251	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	23034059	43762251	15366732	61	36070										
KDELR1	0	genome.wustl.edu	37	chr19	48892898	48892899	+	Frame_Shift_Ins	INS	-	-	T													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tctgaacgtgtcatggttccINScatcgtaagtagctttgaac							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	48892898	48892899	-	T	INS	KDELR1	ENST00000330720	human	ensembl	69_37n	-1	known	frame_shift_ins	c.263_262	p.G88fs	1.000:1.000	pfam_ER_ret_rcpt	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR1	HGNC	ENSG00000105438	90	0	0	305	3214	91.33	-	-	-	T	48892899	-	T	48892898	7	5	329	1	0	1	1	0	0	0	0	0	8173	623	22	0	387	0	KDELR1	19	48892898	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	5130647	48892898	10236085	62	36071	289	2								
KDELR1	0	genome.wustl.edu	37	chr19	48892902	48892903	+	Frame_Shift_Ins	INS	-	-	T													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aacgtgtcatggttcccatcINSgtaagtagctttgaacttgc							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	48892902	48892903	-	T	INS	KDELR1	ENST00000330720	human	ensembl	69_37n	-1	known	frame_shift_ins	c.259_258	p.D86fs	1.000:0.833	pfam_ER_ret_rcpt	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR1	HGNC	ENSG00000105438	90	0	0	322	2967	90.21	-	-	-	T	48892903	-	T	48892902	7	5	329	1	0	1	1	0	0	0	0	0	8173	884	31	0	391	0	KDELR1	19	48892902	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	4	48892902	10236081	63	36072	289	2								
SIGLEC7	0	genome.wustl.edu	37	chr19	51645679	51645680	+	Frame_Shift_Ins	INS	-	-	CT													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gggagggagagggtggaaggINSacagaagagtaaccggaagg							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	51645679	51645680	-	CT	INS	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	frame_shift_ins	c.53_54	p.Q19fs	0.004:0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	72	0	0	33	21	38.89	-	-	-	CT	51645680	-	CT	51645679	7	5	329	1	0	1	1	0	0	0	0	0	14402	1174	41	0	55	0	SIGLEC7	19	51645679	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	2752777	51645679	7483304	64	36073										
ZNF671	0	genome.wustl.edu	37	chr19	58232832	58232832	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	gggctggttctggtgctggtCaaagtctgtactgaaccaga	14	8	3	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	19	58232832	58232832	C	T	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	missense	c.622	p.D208N	0.325	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	139	0	0	117	18	13.33	-	-	-	T	58232832	C	T	58232832	3	4	329	1	0	0	0	0	1	0	0	0	18174	826	29	2	986	2	ZNF671	19	58232832	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	6587153	58232832	896151	65	36074										
C20orf94	0	genome.wustl.edu	37	chr20	10603752	10603753	+	Frame_Shift_Ins	INS	-	-	C													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ttctcttggaagtgatcgatINStagtcccgagagaaataata							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	20	10603752	10603753	-	C	INS	C20orf94	ENST00000334534	human	ensembl	69_37n	1	known	frame_shift_ins	c.952_953	p.L318fs	0.998:0.999	NULL	NULL	-	no_errors	C20orf94	HGNC	ENSG00000149346	177	0	0	168	90	34.88	-	-	-	C	10603753	-	C	10603752	7	5	329	1	0	1	1	0	0	0	0	0	2141	1490	52	0	978	0	C20orf94	20	10603752	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09		10603752	52421768	66	36075										
RIN2	0	genome.wustl.edu	37	chr20	19970723	19970723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cacgtggaggccatgctgaaGgactttcacatggccgatgg	14	10	1	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	20	19970723	19970723	G	A	SNP	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	silent	c.1983	p.K661	0.997	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	11	0	0	12	6	33.33	-	-	-	A	19970723	G	A	19970723	2	1	329	1	0	0	0	0	0	0	0	1	13458	991	35	4		4	RIN2	20	19970723	Silent	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09	9366971	19970723	43054797	67	36076										
SEMG1	0	genome.wustl.edu	37	chr20	43836891	43836891	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aagcagtatttatagccaaaCtgaagagaaagcacagggca	10	7	0	2			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	20	43836891	43836891	C	A	SNP	SEMG1	ENST00000372781	human	ensembl	69_37n	1	known	missense	c.953	p.T318N	0.001	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233	86	0	0	40	109	73.15	-	-	-	A	43836891	C	A	43836891	3	1	329	1	0	0	0	0	1	0	0	0	14132	565	20	4	959	4	SEMG1	20	43836891	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	23866168	43836891	19188629	68	36077										
WDR4	0	genome.wustl.edu	37	chr21	44270341	44270342	+	Frame_Shift_Ins	INS	-	-	A													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ctgctgaagctggcgtctgcINSgccggcagagcctgtgatgg							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	21	44270341	44270342	-	A	INS	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1057_1056	p.A352fs	0.000:0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	78	0	0	40	66	62.26	-	-	-	A	44270342	-	A	44270341	7	5	329	1	0	1	1	0	0	0	0	0	17390	768	27	0	185	0	WDR4	21	44270341	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09		44270341	3859554	69	36078	290	2								
WDR4	0	genome.wustl.edu	37	chr21	44270347	44270348	+	Frame_Shift_Ins	INS	-	-	A													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aagctggcgtctgcgccggcINSagagcctgtgatgggggaac							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	21	44270347	44270348	-	A	INS	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1051_1050	p.A350fs	0.000:0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	76	0	0	38	68	64.15	-	-	-	A	44270348	-	A	44270347	7	5	329	1	0	1	1	0	0	0	0	0	17390	710	25	0	191	0	WDR4	21	44270347	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	6	44270347	3859548	70	36079	290	2								
PPIL2	0	genome.wustl.edu	37	chr22	22042019	22042020	+	In_Frame_Ins	INS	-	-	GCA													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cagatccatccggaactttgINStggtgagtgacgagagtcac							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	22	22042019	22042020	-	GCA	INS	PPIL2	ENST00000412327	human	ensembl	69_37n	1	known	in_frame_ins	c.985_986	p.V329in_frame_insGM	1.000:1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	81	0	0	16	20	55.56	-	-	-	GCA	22042020	-	GCA	22042019	7	5	329	1	0	1	1	0	0	0	0	0	12404	1377	48	0	1035	0	PPIL2	22	22042019	In_Frame_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09		22042019	29262547	71	36080										
TRIOBP	0	genome.wustl.edu	37	chr22	38155444	38155444	+	Frame_Shift_Del	DEL	G	G	-													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ctggtgggcgtgatcactgtGcccgttttacagacaaggcc							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	22	38155444	38155444	G	-	DEL	TRIOBP	ENST00000407319	human	ensembl	69_37n	1	known	frame_shift_del	c.1206	p.V404fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	90	0	0	32	18	35.29	-	-	-	-	38155444	G	-	38155444	7	5	329	1	0	1	0	1	0	0	0	0	16649	1306	46	0	6594	0	TRIOBP	22	38155444	Frame_Shift_Del	DEL	G	TCGA-AO-A0JB-01A-11W-A071-09	16113425	38155444	13149122	72	36081			1	61		2	2	25	N	G_-	5.814397e-05
TRIOBP	0	genome.wustl.edu	37	chr22	38155468	38155469	+	Frame_Shift_Ins	INS	-	-	A													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ttttacagacaaggccactgINSagctctgagaggttatgtga							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	22	38155468	38155469	-	A	INS	TRIOBP	ENST00000407319	human	ensembl	69_37n	1	known	frame_shift_ins	c.1230_1231	p.S410fs	1.000:1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	73	0	0	26	16	38.1	-	-	-	A	38155469	-	A	38155468	7	5	329	1	0	1	1	0	0	0	0	0	16649	1277	45	0	6618	0	TRIOBP	22	38155468	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	24	38155468	13149098	73	36082			1	61		2	2	25	N	G_-	5.814397e-05
TUBGCP6	0	genome.wustl.edu	37	chr22	50682186	50682187	+	Frame_Shift_Ins	INS	-	-	G													0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	aggtccgcattgtctggcacINSggggggcaggcccagtcgga							TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	22	50682186	50682187	-	G	INS	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	frame_shift_ins	c.703_702	p.V234fs	0.995:0.063	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	24	0	0	10	2	16.67	-	-	-	G	50682187	-	G	50682186	7	5	329	1	0	1	1	0	0	0	0	0	16867	536	19	0	4856	0	TUBGCP6	22	50682186	Frame_Shift_Ins	INS	-	TCGA-AO-A0JB-01A-11W-A071-09	12526718	50682186	622380	74	36083										
GPR64	0	genome.wustl.edu	37	chrX	19031863	19031863	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	caggggcagacacggtgggaGaggaaaatgaggctttcaca	16	7	1	3			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	X	19031863	19031863	G	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.1040	p.S347F	0.011	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	119	0	0	51	21	29.17	-	-	-	A	19031863	G	A	19031863	3	1	329	1	0	0	0	0	1	0	0	0	6755	942	33	2	2069	2	GPR64	23	19031863	Missense_Mutation	SNP	G	TCGA-AO-A0JB-01A-11W-A071-09		19031863	136238697	75	36084										
TBX22	0	genome.wustl.edu	37	chrX	79282218	79282218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	tccagatcattctgcaatccAtgcataagtacaaaccccga	5	13	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	X	79282218	79282218	A	G	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.649	p.M217V	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	170	0	0	123	97	44.09	-	-	-	G	79282218	A	G	79282218	3	3	329	1	0	0	0	0	1	0	0	0	15753	217	8	5	667	5	TBX22	23	79282218	Missense_Mutation	SNP	A	TCGA-AO-A0JB-01A-11W-A071-09	60250355	79282218	75988342	76	36085										
RAB9B	0	genome.wustl.edu	37	chrX	103080633	103080633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	ggagtcaaatttgttggttaCgtaacggttcataagcgaac	11	6	2	0			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	X	103080633	103080633	C	T	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.82	p.V28I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	236	0	0	270	45	14.29	-	-	-	T	103080633	C	T	103080633	3	4	329	1	0	0	0	0	1	0	0	0	13042	536	19	1	527	1	RAB9B	23	103080633	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	23798415	103080633	52189927	77	36086										
RGAG1	0	genome.wustl.edu	37	chrX	109694149	109694149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0533333333333333	4	0.836283002870717	1.11906432748538	2.33138401559454	0.736226531240382	1	1	0	cagactctggggcactttccCcattgctaatgccagcctca	8	15	2	1			TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4f06be-2a16-4ae2-9dd4-5d87f480810b	f51b5a75-a541-4589-b883-7f651a2612c9	X	109694149	109694149	C	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.304	p.P102T	0.813	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	741	0	0	311	182	36.92	-	-	-	A	109694149	C	A	109694149	3	1	329	1	0	0	0	0	1	0	0	0	13357	623	22	4	306	4	RGAG1	23	109694149	Missense_Mutation	SNP	C	TCGA-AO-A0JB-01A-11W-A071-09	6613516	109694149	45576411	78	36087										
GPR98	0	genome.wustl.edu	37	chr5	89979505	89979505	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	cctctggcaacatcacatttGagattgggcagacgagcgcc	11	12	2	2			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	5	89979505	89979505	G	C	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.5767	p.E1923Q	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	53	0	0	61	10	14.08	-	-	-	C	89979505	G	C	89979505	3	2	330	1	0	0	0	0	1	0	0	0	6772	1291	45	2	5877	2	GPR98	5	89979505	Missense_Mutation	SNP	G	TCGA-AO-A0JC-01A-11W-A071-09		89979505	90935755	1	36088										
CDH24	0	genome.wustl.edu	37	chr14	23518908	23518908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	ggagacatggctactgttgcCaacttcatctctgtccaggg	11	11	2	1			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	14	23518908	23518908	C	G	SNP	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	missense	c.1639	p.G547R	0.984	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	23	0	0	18	4	18.18	-	-	-	G	23518908	C	G	23518908	3	3	330	1	0	0	0	0	1	0	0	0	3138	594	21	4	832	4	CDH24	14	23518908	Missense_Mutation	SNP	C	TCGA-AO-A0JC-01A-11W-A071-09		23518908	83830632	2	36089										
MKRN3	0	genome.wustl.edu	37	chr15	23811712	23811712	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	ggggagagctgtatgtacctCcatggagacatatgcgacat	13	8	0	2			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	15	23811712	23811712	C	T	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	silent	c.783	p.L261	0.999	smart_Znf_CCCH	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	33	0	0	40	5	11.11	-	-	-	T	23811712	C	T	23811712	2	4	330	1	0	0	0	0	0	0	0	1	9679	842	30	2		2	MKRN3	15	23811712	Silent	SNP	C	TCGA-AO-A0JC-01A-11W-A071-09		23811712	78719680	3	36090										
POLR3E	0	genome.wustl.edu	37	chr16	22337509	22337510	+	Frame_Shift_Ins	INS	-	-	C													0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	atctgcacttggccagcctgINSccccccggccacacactctt							TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	16	22337509	22337510	-	C	INS	POLR3E	ENST00000299853	human	ensembl	69_37n	1	known	frame_shift_ins	c.1776_1777	p.G594fs	0.991:1.000	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	18	0	0	14	2	12.5	-	-	-	C	22337510	-	C	22337509	7	5	330	1	0	1	1	0	0	0	0	0	12306	1306	46	0	1842	0	POLR3E	16	22337509	Frame_Shift_Ins	INS	-	TCGA-AO-A0JC-01A-11W-A071-09		22337509	68017244	4	36091										
AARS	0	genome.wustl.edu	37	chr16	70292941	70292941	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	ccttcttgatctgttgggtgGacatggctcccttggcagta	12	10	2	1			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	16	70292941	70292941	G	C	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1934	p.S645C	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	44	0	0	57	7	10.94	-	-	-	C	70292941	G	C	70292941	3	2	330	1	0	0	0	0	1	0	0	0	19	1174	41	2	1004	2	AARS	16	70292941	Missense_Mutation	SNP	G	TCGA-AO-A0JC-01A-11W-A071-09	47955432	70292941	20061812	5	36092										
B3GNT3	0	genome.wustl.edu	37	chr19	17922586	17922586	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	2	0.479717513739179	2.58823529411765	2.15686274509804	3.23529411764706	1	1	0	tactatgtgccagaggtggtGactcagaatgagcggtaccc	13	9	1	4			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	19	17922586	17922586	G	A	SNP	B3GNT3	ENST00000318683	human	ensembl	69_37n	1	known	silent	c.774	p.V258	0.730	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913	34	0	0	31	6	16.22	-	-	-	A	17922586	G	A	17922586	2	1	330	1	0	0	0	0	0	0	0	1	1262	1277	45	2		2	B3GNT3	19	17922586	Silent	SNP	G	TCGA-AO-A0JC-01A-11W-A071-09		17922586	41206397	6	36093										
ITGA10	0	genome.wustl.edu	37	chr1	145527997	145527998	+	Frame_Shift_Ins	INS	-	-	G													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acgtttatcgctgccctgtaINSgggggggcccacaatgcccc							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	145527997	145527998	-	G	INS	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	frame_shift_ins	c.234_235	p.A80fs	0.998:1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	23	0	0	29	4	12.12	-	-	-	G	145527998	-	G	145527997	7	5	331	1	0	1	1	0	0	0	0	0	7927	407	15	0	244	0	ITGA10	1	145527997	Frame_Shift_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09		145527997	103722624	1	36094										
HRNR	0	genome.wustl.edu	37	chr1	152186699	152186699	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gttgaccgtagccagaggacTgtcctgagcgagactctcgg	14	11	1	4			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	152186699	152186699	T	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.7406	p.Q2469L	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	30	0	0	27	5	15.62	-	-	-	A	152186699	T	A	152186699	3	1	331	1	0	0	0	0	1	0	0	0	7410	1580	55	5	1150	5	HRNR	1	152186699	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	6658702	152186699	97063922	2	36095										
FLG	0	genome.wustl.edu	37	chr1	152279089	152279089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	atccttgtcttcctctagtgCtgggccccgtccatccatgg	9	15	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	152279089	152279089	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8273	p.S2758I	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	196	0	0	172	23	11.79	-	-	-	A	152279089	C	A	152279089	3	1	331	1	0	0	0	0	1	0	0	0	5968	797	28	4	3916	4	FLG	1	152279089	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	92390	152279089	96971532	3	36096										
FLG	0	genome.wustl.edu	37	chr1	152281708	152281708	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cccgagaggaagcttcatggTgacgcgaccctgagtgcctg	14	12	1	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	152281708	152281708	T	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.5654	p.H1885R	0.001	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	239	1	0.41	101	38	27.34	-	-	-	C	152281708	T	C	152281708	3	2	331	1	0	0	0	0	1	0	0	0	5968	1696	59	5	6535	5	FLG	1	152281708	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	2619	152281708	96968913	4	36097										
AQP10	0	genome.wustl.edu	37	chr1	154295794	154295794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cctccatttttgccacctatCctgccccctatctgtccctg	4	19	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	154295794	154295794	C	A	SNP	AQP10	ENST00000324978	human	ensembl	69_37n	1	known	missense	c.448	p.P150T	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP10	HGNC	ENSG00000143595	79	0	0	66	18	21.43	-	-	-	A	154295794	C	A	154295794	3	1	331	1	0	0	0	0	1	0	0	0	824	855	30	2	462	2	AQP10	1	154295794	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	2014086	154295794	94954827	5	36098										
KIAA1614	0	genome.wustl.edu	37	chr1	180905471	180905471	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tcctgaaggctgggcgccaaCccctcccccttcgaggaaaa	10	16	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	180905471	180905471	C	A	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.2426	p.T809N	0.989	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	72	0	0	53	18	25.35	-	-	-	A	180905471	C	A	180905471	3	1	331	1	0	0	0	0	1	0	0	0	8300	507	18	4	2444	4	KIAA1614	1	180905471	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	26609677	180905471	68345150	6	36099										
GLT25D2	0	genome.wustl.edu	37	chr1	183944313	183944313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	catgggcaaaccgggaggttGgccagtgctttggtccaatt	14	9	0	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	183944313	183944313	G	T	SNP	GLT25D2	ENST00000361927	human	ensembl	69_37n	-1	known	missense	c.410	p.P137Q	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	GLT25D2	HGNC	ENSG00000198756	60	0	0	85	15	15	-	-	-	T	183944313	G	T	183944313	3	4	331	1	0	0	0	0	1	0	0	0	6519	1348	47	4	1510	4	GLT25D2	1	183944313	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	3038842	183944313	65306308	7	36100										
KCNK2	0	genome.wustl.edu	37	chr1	215259971	215259971	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgatccagaagcaaacattcAtatcccaacattcctgtgtc	5	12	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	215259971	215259971	A	G	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.307	p.I103V	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	160	0	0	164	120	42.25	-	-	-	G	215259971	A	G	215259971	3	3	331	1	0	0	0	0	1	0	0	0	8120	217	8	5	356	5	KCNK2	1	215259971	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	31315658	215259971	33990650	8	36101										
OR14A16	0	genome.wustl.edu	37	chr1	247978926	247978926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gaggacattccccatcagggCacacaaataaatcaacaaga	7	11	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	247978926	247978926	C	A	SNP	OR14A16	ENST00000357627	human	ensembl	69_37n	-1	known	missense	c.106	p.A36S	0.021	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772	119	0	0	223	62	21.75	-	-	-	A	247978926	C	A	247978926	3	1	331	1	0	0	0	0	1	0	0	0	11018	710	25	4	827	4	OR14A16	1	247978926	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	32718955	247978926	1271695	9	36102										
OR2L2	0	genome.wustl.edu	37	chr1	248201996	248201996	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gcaaaagagtgtgtgtgatgAtgataacaggatcttggatg	14	3	1	4			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	248201996	248201996	A	G	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	missense	c.427	p.M143V	0.524	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	403	0	0	460	363	44.11	-	-	-	G	248201996	A	G	248201996	3	3	331	1	0	0	0	0	1	0	0	0	11080	333	12	5	429	5	OR2L2	1	248201996	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	223070	248201996	1048625	10	36103										
OR2L2	0	genome.wustl.edu	37	chr1	248202362	248202362	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	atgtacgtccaagatccctgCgatctccaacagaggacaag	9	12	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	1	248202362	248202362	C	T	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	nonsense	c.793	p.R265*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	276	0	0	422	135	24.19	-	-	-	T	248202362	C	T	248202362	4	4	331	1	0	0	0	0	0	1	0	0	11080	760	27	1	795	1	OR2L2	1	248202362	Nonsense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	366	248202362	1048259	11	36104										
GCKR	0	genome.wustl.edu	37	chr2	27721130	27721131	+	Frame_Shift_Ins	INS	-	-	G													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tccttcttcaggagccagatINSggggggctggttgtgctgag							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	27721130	27721131	-	G	INS	GCKR	ENST00000264717	human	ensembl	69_37n	1	known	frame_shift_ins	c.294_295	p.L100fs	0.653:0.982	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734	36	0	0	30	4	11.76	-	-	-	G	27721131	-	G	27721130	7	5	331	1	0	1	1	0	0	0	0	0	6344	1461	51	0	308	0	GCKR	2	27721130	Frame_Shift_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09		27721130	215478243	12	36105										
THNSL2	0	genome.wustl.edu	37	chr2	88474185	88474185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cgaccgagccttcagcagatTccgtcacagagaagtggtcc	11	13	2	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	88474185	88474185	T	C	SNP	THNSL2	ENST00000324166	human	ensembl	69_37n	1	known	missense	c.251	p.F84S	1.000	superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	78	0	0	42	17	28.81	-	-	-	C	88474185	T	C	88474185	3	2	331	1	0	0	0	0	1	0	0	0	15958	1783	62	5	257	5	THNSL2	2	88474185	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	60753055	88474185	154725188	13	36106										
REV1	0	genome.wustl.edu	37	chr2	100019354	100019354	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tcaaagttaaggaattaccaGgggtttctctgcaggaggtc	12	7	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	100019354	100019354	G	C	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	missense	c.3382	p.L1128V	0.966	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	150	0	0	104	50	32.47	-	-	-	C	100019354	G	C	100019354	3	2	331	1	0	0	0	0	1	0	0	0	13322	991	35	4	389	4	REV1	2	100019354	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	11545169	100019354	143180019	14	36107										
MERTK	0	genome.wustl.edu	37	chr2	112779075	112779075	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acagtggcgattattaccgcCaaggccgcattgctaagatg	11	10	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	112779075	112779075	C	T	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	nonsense	c.2266	p.Q756*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	78	0	0	74	27	26.73	-	-	-	T	112779075	C	T	112779075	4	4	331	1	0	0	0	0	0	1	0	0	9550	595	21	4	2332	4	MERTK	2	112779075	Nonsense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	12759721	112779075	130420298	15	36108										
SSB	0	genome.wustl.edu	37	chr2	170663549	170663549	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtagagacccctggccagaaGtacaaagaaacagacctgct	10	11	0	4			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	170663549	170663549	G	A	SNP	SSB	ENST00000260956	human	ensembl	69_37n	1	known	silent	c.522	p.K174	0.960	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	SSB	HGNC	ENSG00000138385	98	0	0	76	36	32.14	-	-	-	A	170663549	G	A	170663549	2	1	331	1	0	0	0	0	0	0	0	1	15269	1020	36	4		4	SSB	2	170663549	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	57884474	170663549	72535824	16	36109										
MPP4	0	genome.wustl.edu	37	chr2	202512439	202512439	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acttcatgtccacatagtagTcagtaataaccttggcattt	6	9	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	202512439	202512439	T	A	SNP	MPP4	ENST00000359962	human	ensembl	69_37n	-1	known	missense	c.1694	p.D565V	0.999	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP4	HGNC	ENSG00000082126	80	0	0	45	25	35.71	-	-	-	A	202512439	T	A	202512439	3	1	331	1	0	0	0	0	1	0	0	0	9808	1667	58	5	227	5	MPP4	2	202512439	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	31848890	202512439	40686934	17	36110										
COL4A4	0	genome.wustl.edu	37	chr2	227872836	227872836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	accgcctgggccggggcctcGcataccgcacagcggctgac	14	17	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	227872836	227872836	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	silent	c.4707	p.C1569	0.111	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	24	0	0	3	8	72.73	-	-	-	A	227872836	G	A	227872836	2	1	331	1	0	0	0	0	0	0	0	1	3723	1079	38	1		1	COL4A4	2	227872836	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	25360397	227872836	15326537	18	36111										
SPHKAP	0	genome.wustl.edu	37	chr2	228884271	228884271	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	accactgtatcttttgtggaAtagcaactgggaagcagaga	11	7	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	2	228884271	228884271	A	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	nonsense	c.1299	p.Y433*	0.989	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	89	0	0	48	11	18.64	-	-	-	T	228884271	A	T	228884271	4	4	331	1	0	0	0	0	0	1	0	0	15139	108	4	5	3827	5	SPHKAP	2	228884271	Nonsense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	1011435	228884271	14315102	19	36112										
RNF123	0	genome.wustl.edu	37	chr3	49757963	49757963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ggagagagcaagccacatcaGtgctcctggcagatccctgc	12	13	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	3	49757963	49757963	G	A	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.3520	p.V1174M	0.997	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	39	0	0	24	7	22.58	-	-	-	A	49757963	G	A	49757963	3	1	331	1	0	0	0	0	1	0	0	0	13519	1029	36	4	3658	4	RNF123	3	49757963	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		49757963	148264467	20	36113										
SIDT1	0	genome.wustl.edu	37	chr3	113345058	113345058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tactgctctgtttttctcatTcttggtgagttcatatctat	6	8	5	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	3	113345058	113345058	T	G	SNP	SIDT1	ENST00000393830	human	ensembl	69_37n	1	known	missense	c.2432	p.F811C	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	179	0	0	164	74	31.09	-	-	-	G	113345058	T	G	113345058	3	3	331	1	0	0	0	0	1	0	0	0	14391	1783	62	5	2511	5	SIDT1	3	113345058	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	63587095	113345058	84677372	21	36114										
GRAMD1C	0	genome.wustl.edu	37	chr3	113595081	113595081	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ctcgactcatcccaaacgctAtccagatagttacagaaagt	6	12	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	3	113595081	113595081	A	T	SNP	GRAMD1C	ENST00000358160	human	ensembl	69_37n	1	known	missense	c.433	p.I145F	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1C	HGNC	ENSG00000178075	185	0	0	171	73	29.92	-	-	-	T	113595081	A	T	113595081	3	4	331	1	0	0	0	0	1	0	0	0	6800	449	16	5	451	5	GRAMD1C	3	113595081	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	250023	113595081	84427349	22	36115										
EPHB1	0	genome.wustl.edu	37	chr3	134885809	134885809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gggcttatagcaaagaggctGtgtacagcgataagctccag	13	8	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	3	134885809	134885809	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.1720	p.V574M	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	246	0	0	129	53	29.12	-	-	-	A	134885809	G	A	134885809	3	1	331	1	0	0	0	0	1	0	0	0	5211	1377	48	4	1754	4	EPHB1	3	134885809	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	21290728	134885809	63136621	23	36116										
VPS8	0	genome.wustl.edu	37	chr3	184566859	184566859	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ttaaaaactgctttctttagAtcagaatcaagctttgcgac	6	8	3	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	3	184566859	184566859	A	T	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	1	known	missense	c.542	p.Y181F	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	66	0	0	50	28	35.9	-	-	-	T	184566859	A	T	184566859	3	4	331	1	0	0	0	0	1	0	0	0	17315	347	12	5	568	5	VPS8	3	184566859	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	49681050	184566859	13455571	24	36117										
USP53	0	genome.wustl.edu	37	chr4	120192520	120192520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cccaaatggttttaaacaacAtgggaatccacatctatatc	5	10	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	4	120192520	120192520	A	G	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	missense	c.1505	p.H502R	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	103	0	0	70	34	32.69	-	-	-	G	120192520	A	G	120192520	3	3	331	1	0	0	0	0	1	0	0	0	17181	217	8	5	1551	5	USP53	4	120192520	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09		120192520	70961756	25	36118										
SEMA5A	0	genome.wustl.edu	37	chr5	9066543	9066543	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cactactcaccatctgtggaGcagccactggtgccgtcgct	10	15	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	5	9066543	9066543	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	nonsense	c.2289	p.C763*	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	148	0	0	167	76	30.89	-	-	-	T	9066543	G	T	9066543	4	4	331	1	0	0	0	0	0	1	0	0	14125	963	34	4	963	4	SEMA5A	5	9066543	Nonsense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		9066543	171848717	26	36119										
ZFR	0	genome.wustl.edu	37	chr5	32390509	32390509	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ccaatgatgttgttcttcctCcattctcctccagtacatgt	5	13	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	5	32390509	32390509	C	A	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	nonsense	c.2014	p.E672*	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	55	0	0	96	34	25.95	-	-	-	A	32390509	C	A	32390509	4	1	331	1	0	0	0	0	0	1	0	0	17755	864	30	2	1246	2	ZFR	5	32390509	Nonsense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	23323966	32390509	148524751	27	36120										
MCCC2	0	genome.wustl.edu	37	chr5	70898474	70898474	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tacttaggcaagtcaccagaGtggtaaaataaactattatt	7	6	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	5	70898474	70898474	G	C	SNP	MCCC2	ENST00000507169	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCCC2	HGNC	ENSG00000131844	212	0	0	141	58	29.15	-	-	-	C	70898474	G	C	70898474	1	2	331	0	1	0	0	0	0	0	0	0	9446	1044	36	4		4	MCCC2	5	70898474	RNA	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	38507965	70898474	110016786	28	36121										
PCDHB5	0	genome.wustl.edu	37	chr5	140516843	140516843	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	taccagctgctcaaggccacGgagcccgggctgttcagcat	12	14	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	5	140516843	140516843	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	silent	c.1827	p.T609	0.902	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	78	0	0	77	48	38.1	-	-	-	A	140516843	G	A	140516843	2	1	331	1	0	0	0	0	0	0	0	1	11618	1103	39	1		1	PCDHB5	5	140516843	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	69618369	140516843	40398417	29	36122										
DCTN4	0	genome.wustl.edu	37	chr5	150110686	150110686	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cagcctgagctggctcaatcTttatctctttctgatcctct	6	13	5	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	5	150110686	150110686	T	G	SNP	DCTN4	ENST00000446090	human	ensembl	69_37n	-1	known	missense	c.665	p.K222T	1.000	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912	145	0	0	148	55	27.09	-	-	-	G	150110686	T	G	150110686	3	3	331	1	0	0	0	0	1	0	0	0	4340	1609	56	5	766	5	DCTN4	5	150110686	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	9593843	150110686	30804574	30	36123										
DSP	0	genome.wustl.edu	37	chr6	7576652	7576652	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agaatccatgaaatttggagAttccaacacagtcatgcggt	9	8	1	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	7576652	7576652	A	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.2756	p.D919V	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	72	0	0	47	34	41.98	-	-	-	T	7576652	A	T	7576652	3	4	331	1	0	0	0	0	1	0	0	0	4816	333	12	5	2830	5	DSP	6	7576652	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09		7576652	163538415	31	36124										
NUP153	0	genome.wustl.edu	37	chr6	17629106	17629106	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gaagtagaagtgacaggctcTtgctgtttctcttctgtcct	10	9	3	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	17629106	17629106	T	C	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	silent	c.3417	p.Q1139	0.998	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	107	0	0	73	43	37.07	-	-	-	C	17629106	T	C	17629106	2	2	331	1	0	0	0	0	0	0	0	1	10828	1606	56	5		5	NUP153	6	17629106	Silent	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	10052454	17629106	153485961	32	36125										
ZNF76	0	genome.wustl.edu	37	chr6	35258417	35258417	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgtgattgcttgtcctcacaGgtgcatgaacgagctcatac	10	10	2	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	35258417	35258417	G	A	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	1	known	splice_site	c.550-1	e6-1	1.000	-	-	-	no_errors	ZNF76	HGNC	ENSG00000065029	190	0	0	78	55	41.35	-	-	-	A	35258417	G	A	35258417	5	1	331	1	0	0	0	0	0	0	1	0	18229	1014	35	4	571	4	ZNF76	6	35258417	Splice_Site	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	17629311	35258417	135856650	33	36126										
KLC4	0	genome.wustl.edu	37	chr6	43039931	43039931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acctgggagctctgtataggCgccagggaaagctggaggct	16	9	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	43039931	43039931	C	T	SNP	KLC4	ENST00000259708	human	ensembl	69_37n	1	known	missense	c.1480	p.R494C	1.000	smart_TPR_repeat	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171	68	0	0	42	13	23.64	-	-	-	T	43039931	C	T	43039931	3	4	331	1	0	0	0	0	1	0	0	0	8389	768	27	1	1595	1	KLC4	6	43039931	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	7781514	43039931	128075136	34	36127										
EYS	0	genome.wustl.edu	37	chr6	66205226	66205226	+	Frame_Shift_Del	DEL	C	C	-													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgccattcttccaccaattgCcgtctacatgtttttccatt							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	66205226	66205226	C	-	DEL	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	frame_shift_del	c.78	p.Q27fs	0.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	89	0	0	87	34	27.64	-	-	-	-	66205226	C	-	66205226	7	5	331	1	0	1	0	1	0	0	0	0	5369	726	26	0	9478	0	EYS	6	66205226	Frame_Shift_Del	DEL	C	TCGA-AO-A0JD-01A-11W-A071-09	23165295	66205226	104909841	35	36128										
KIAA0408	0	genome.wustl.edu	37	chr6	127765377	127765377	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agacgacgatttgctggtctAgcaggtcgggaaaatccttt	12	8	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	6	127765377	127765377	A	G	SNP	KIAA0408	ENST00000465254	human	ensembl	69_37n	-1	putative	nonstop	c.265	p.*89Q	0.908	NULL	NULL	-	no_start_codon	KIAA0408	HGNC	ENSG00000189367	77	0	0	71	21	22.83	-	-	-	G	127765377	A	G	127765377	4	3	331	1	0	0	0	0	0	0	0	0	8226	407	15	5	126	5	KIAA0408	6	127765377	Nonstop_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	61560151	127765377	43349690	36	36129										
CHST12	0	genome.wustl.edu	37	chr7	2473033	2473033	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cccttcgtgcgcctgatctcCgccttccgcagcaagttcga	9	17	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	7	2473033	2473033	C	T	SNP	CHST12	ENST00000258711	human	ensembl	69_37n	1	known	silent	c.759	p.S253	0.076	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST12	HGNC	ENSG00000136213	49	0	0	36	6	14.29	-	-	-	T	2473033	C	T	2473033	2	4	331	1	0	0	0	0	0	0	0	1	3429	639	23	1		1	CHST12	7	2473033	Silent	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09		2473033	156665630	37	36130										
ZNF804B	0	genome.wustl.edu	37	chr7	88963433	88963433	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tacaaccatagtgatgccagGatatctgaatgcctggatga	10	8	1	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	7	88963433	88963433	G	T	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.1137	p.R379S	0.038	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	110	0	0	161	39	19.5	-	-	-	T	88963433	G	T	88963433	3	4	331	1	0	0	0	0	1	0	0	0	18264	1165	41	2	1151	2	ZNF804B	7	88963433	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	86490400	88963433	70175230	38	36131										
TRRAP	0	genome.wustl.edu	37	chr7	98579427	98579427	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ccgaaggagatggcctggaaGgtgaacatgtaccgcggata	15	8	0	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	7	98579427	98579427	G	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.8649	p.K2883N	0.994	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	9	0	0	9	4	30.77	-	-	-	C	98579427	G	C	98579427	3	2	331	1	0	0	0	0	1	0	0	0	16697	991	35	4	8817	4	TRRAP	7	98579427	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	9615994	98579427	60559236	39	36132										
XKR6	0	genome.wustl.edu	37	chr8	10755617	10755617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ccaagctgggtatcgctttcTtggcatgtcaatcttaatga	9	9	3	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	10755617	10755617	T	G	SNP	XKR6	ENST00000382461	human	ensembl	69_37n	-1	putative	missense	c.1101	p.Q367H	1.000	NULL	pfam_Transport_prot_XK	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	XKR6	HGNC	ENSG00000171044	164	0	0	124	23	15.65	-	-	-	G	10755617	T	G	10755617	3	3	331	1	0	0	0	0	1	0	0	0	17532	1617	56	5	158	5	XKR6	8	10755617	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09		10755617	135608405	40	36133										
PCM1	0	genome.wustl.edu	37	chr8	17872349	17872349	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ccagtgttagtgaatgactaTgtatgtatcatttacatttc	7	6	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	17872349	17872349	T	G	SNP	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	nonsense	c.5841	p.Y1947*	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	44	0	0	34	8	19.05	-	-	-	G	17872349	T	G	17872349	4	3	331	1	0	0	0	0	0	1	0	0	11657	1478	51	5	5975	5	PCM1	8	17872349	Nonsense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	7116732	17872349	128491673	41	36134										
CHRNA6	0	genome.wustl.edu	37	chr8	42611543	42611543	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cgtcactttttcaccacagtCcgaaggaaggtaaaagacca	8	11	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	42611543	42611543	C	A	SNP	CHRNA6	ENST00000276410	human	ensembl	69_37n	-1	known	missense	c.799	p.D267Y	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	166	0	0	76	40	34.19	-	-	-	A	42611543	C	A	42611543	3	1	331	1	0	0	0	0	1	0	0	0	3416	855	30	2	693	2	CHRNA6	8	42611543	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	24739194	42611543	103752479	42	36135										
FAM92A1	0	genome.wustl.edu	37	chr8	94738722	94738722	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gagatcactgtcagctaagtGtgtatctggaacaggacagg	13	7	3	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	94738722	94738722	G	T	SNP	FAM92A1	ENST00000518322	human	ensembl	69_37n	1	known	missense	c.758	p.C253F	0.993	NULL	pfam_FAM92	-	no_errors	FAM92A1	HGNC	ENSG00000188343	57	0	0	61	32	34.41	-	-	-	T	94738722	G	T	94738722	3	4	331	1	0	0	0	0	1	0	0	0	5698	1377	48	4	784	4	FAM92A1	8	94738722	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	52127179	94738722	51625300	43	36136										
RNF19A	0	genome.wustl.edu	37	chr8	101273937	101273937	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtcagcccaccaacacttccCtcccctatgcttgggttgtg	8	16	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	101273937	101273937	C	G	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	missense	c.1515	p.E505D	0.996	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	116	0	0	111	45	28.85	-	-	-	G	101273937	C	G	101273937	3	3	331	1	0	0	0	0	1	0	0	0	13556	680	24	4	1013	4	RNF19A	8	101273937	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	6535215	101273937	45090085	44	36137										
BAI1	0	genome.wustl.edu	37	chr8	143558834	143558835	+	Frame_Shift_Ins	INS	-	-	C													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	atcgcacgcgcacctgcaggINScccccccagtttgggggcaa							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	8	143558834	143558835	-	C	INS	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	frame_shift_ins	c.1311_1312	p.Q439fs	0.955:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	10	0	0	4	2	33.33	-	-	-	C	143558835	-	C	143558834	7	5	331	1	0	1	1	0	0	0	0	0	1302	1194	42	0	1329	0	BAI1	8	143558834	Frame_Shift_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09	42284897	143558834	2805188	45	36138										
CERCAM	0	genome.wustl.edu	37	chr9	131198073	131198074	+	Frame_Shift_Ins	INS	-	-	G													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ctccatgggatgatgacagcINSggccgcctcatcagctggag							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	9	131198073	131198074	-	G	INS	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	frame_shift_ins	c.1677_1678	p.R560fs	0.254:0.996	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	8	0	0	11	19	63.33	-	-	-	G	131198074	-	G	131198073	7	5	331	1	0	1	1	0	0	0	0	0	3295	767	27	0	1723	0	CERCAM	9	131198073	Frame_Shift_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09		131198073	10015358	46	36139										
NDOR1	0	genome.wustl.edu	37	chr9	140109063	140109063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gctgattcagccctccaactCggctgcccatgtccagcggt	10	16	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	9	140109063	140109063	C	T	SNP	NDOR1	ENST00000371521	human	ensembl	69_37n	1	known	missense	c.764	p.S255L	0.001	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566	26	0	0	5	5	50	-	-	-	T	140109063	C	T	140109063	3	4	331	1	0	0	0	0	1	0	0	0	10321	893	31	1	790	1	NDOR1	9	140109063	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	8910990	140109063	1104368	47	36140										
TACR2	0	genome.wustl.edu	37	chr10	71174803	71174803	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agaagcactgaggggaggccAgggcgagagccaccagccag	17	11	0	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	10	71174803	71174803	A	T	SNP	TACR2	ENST00000373306	human	ensembl	69_37n	-1	known	missense	c.485	p.L162Q	0.994	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073	22	0	0	8	5	38.46	-	-	-	T	71174803	A	T	71174803	3	4	331	1	0	0	0	0	1	0	0	0	15598	188	7	5	727	5	TACR2	10	71174803	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09		71174803	64359944	48	36141										
C11orf24	0	genome.wustl.edu	37	chr11	68029197	68029197	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ttgtagctctcataggcctgCagggcaaacaaaaccaagac	9	11	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	11	68029197	68029197	C	G	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	silent	c.1266	p.L422	0.935	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	35	0	0	28	79	73.83	-	-	-	G	68029197	C	G	68029197	2	3	331	1	0	0	0	0	0	0	0	1	1646	697	25	4		4	C11orf24	11	68029197	Silent	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09		68029197	66977319	49	36142										
FAT3	0	genome.wustl.edu	37	chr11	92087136	92087136	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acaaaatcatttctggaaatGaacttggcttcttttattta	5	6	3	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	11	92087136	92087136	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	nonsense	c.1858	p.E620*	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	91	0	0	53	12	18.46	-	-	-	T	92087136	G	T	92087136	4	4	331	1	0	0	0	0	0	1	0	0	5737	1291	45	2	1860	2	FAT3	11	92087136	Nonsense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	24057939	92087136	42919380	50	36143										
CNTN5	0	genome.wustl.edu	37	chr11	100211931	100211931	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	aacgaatctgaagttgtgggTtacaaggtcagtatttcttc	10	6	3	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	11	100211931	100211931	T	A	SNP	CNTN5	ENST00000279463	human	ensembl	69_37n	1	known	silent	c.3024	p.G1008	0.523	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN5	HGNC	ENSG00000149972	240	0	0	208	195	48.39	-	-	-	A	100211931	T	A	100211931	2	1	331	1	0	0	0	0	0	0	0	1	3674	1712	60	5		5	CNTN5	11	100211931	Silent	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	8124795	100211931	34794585	51	36144										
PCSK7	0	genome.wustl.edu	37	chr11	117076792	117076792	+	Frame_Shift_Del	DEL	A	A	-													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gggcgctcttgttctgggacAggctccagtccccttgctcc							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	11	117076792	117076792	A	-	DEL	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	frame_shift_del	c.2279	p.L760fs	0.061	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	36	0	0	29	18	38.3	-	-	-	-	117076792	A	-	117076792	7	5	331	1	0	1	0	1	0	0	0	0	11678	188	7	0	82	0	PCSK7	11	117076792	Frame_Shift_Del	DEL	A	TCGA-AO-A0JD-01A-11W-A071-09	16864861	117076792	17929724	52	36145										
FGF6	0	genome.wustl.edu	37	chr12	4554431	4554431	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtcccgctgatccggccgtcGgggagcacctggaggtgaaa	16	12	0	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	4554431	4554431	G	C	SNP	FGF6	ENST00000228837	human	ensembl	69_37n	-1	known	silent	c.306	p.P102	0.995	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF6	HGNC	ENSG00000111241	38	0	0	17	9	34.62	-	-	-	C	4554431	G	C	4554431	2	2	331	1	0	0	0	0	0	0	0	1	5902	1103	39	3		3	FGF6	12	4554431	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		4554431	129297464	53	36146										
TUBA1C	0	genome.wustl.edu	37	chr12	49663336	49663336	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ctgcctggaacacggcatccAgcccgatggccagatgccaa	11	15	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	49663336	49663336	A	T	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	1	known	missense	c.92	p.Q31L	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	121	0	0	67	32	32.32	-	-	-	T	49663336	A	T	49663336	3	4	331	1	0	0	0	0	1	0	0	0	16842	188	7	5	98	5	TUBA1C	12	49663336	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	45108905	49663336	84188559	54	36147										
PAN2	0	genome.wustl.edu	37	chr12	56720592	56720592	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gaaggctccggggaatcagtCcagaggtgcacacagccctc	13	13	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	56720592	56720592	C	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	missense	c.1071	p.W357C	1.000	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	94	0	0	110	47	29.94	-	-	-	A	56720592	C	A	56720592	3	1	331	1	0	0	0	0	1	0	0	0	11487	856	30	2	2617	2	PAN2	12	56720592	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	7057256	56720592	77131303	55	36148										
WSCD2	0	genome.wustl.edu	37	chr12	108589649	108589649	+	Missense_Mutation	SNP	C	C	T													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	aattccagcggtacttccgcCggaaacctgtgcgcttcttt							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	108589649	108589649	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.40	p.R14W	0.977	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	191	0	0	141	48	25.4	-	-	-	T	108589649	C	T	108589649	3	4	331	1	0	0	0	0	1	0	0	0	17504	643	23	1	42	1	WSCD2	12	108589649	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	51869057	108589649	25262246	56	36149	291	2								
WSCD2	0	genome.wustl.edu	37	chr12	108589656	108589656	+	Missense_Mutation	SNP	C	C	A													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gcggtacttccgccggaaacCtgtgcgcttctttaccttcc							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	108589656	108589656	C	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.47	p.P16H	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	192	0	0	120	72	37.5	-	-	-	A	108589656	C	A	108589656	3	1	331	1	0	0	0	0	1	0	0	0	17504	681	24	4	49	4	WSCD2	12	108589656	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	7	108589656	25262239	57	36150	291	2								
SSH1	0	genome.wustl.edu	37	chr12	109181920	109181920	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgggagtcagcgacggtggaCgggtcagcctcactggacag	17	10	3	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	12	109181920	109181920	C	A	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	silent	c.2994	p.P998	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	101	0	0	65	21	24.14	-	-	-	A	109181920	C	A	109181920	2	1	331	1	0	0	0	0	0	0	0	1	15275	523	19	3		3	SSH1	12	109181920	Silent	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	592264	109181920	24669975	58	36151										
ESD	0	genome.wustl.edu	37	chr13	47354159	47354159	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gttgcaaattggagcaaatgCtgacacagacttcagaaaca	9	8	1	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	13	47354159	47354159	C	G	SNP	ESD	ENST00000378720	human	ensembl	69_37n	-1	known	missense	c.511	p.A171P	1.000	pfam_Esterase_put,pfam_Peptidase_S9,tigrfam_S-formylglutathione_hydrol	pfam_Esterase_put,pfam_Peptidase_S9,pfam_AXE1,tigrfam_S-formylglutathione_hydrol	-	no_errors	ESD	HGNC	ENSG00000139684	113	0	0	173	76	30.52	-	-	-	G	47354159	C	G	47354159	3	3	331	1	0	0	0	0	1	0	0	0	5287	797	28	4	349	4	ESD	13	47354159	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09		47354159	67815719	59	36152										
RNF219	0	genome.wustl.edu	37	chr13	79209283	79209283	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tcaacttcagccttcagtcgTaaattctccctcaccagacc	4	16	5	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	13	79209283	79209283	T	G	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.600	p.L200F	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	97	0	0	54	23	29.87	-	-	-	G	79209283	T	G	79209283	3	3	331	1	0	0	0	0	1	0	0	0	13568	1635	57	5	1588	5	RNF219	13	79209283	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	31855124	79209283	35960595	60	36153										
SLITRK5	0	genome.wustl.edu	37	chr13	88328771	88328771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtgcctttggagtgtcccacCgcgtgctcttgcaacctgca	11	14	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	13	88328771	88328771	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	silent	c.1128	p.T376	0.913	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	99	0	0	93	37	28.46	-	-	-	T	88328771	C	T	88328771	2	4	331	1	0	0	0	0	0	0	0	1	14835	639	23	1		1	SLITRK5	13	88328771	Silent	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	9119488	88328771	26841107	61	36154										
MYO16	0	genome.wustl.edu	37	chr13	109672250	109672250	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gccttcaccatcatgcactaCgcaggaagggtaagtggcca	11	12	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	13	109672250	109672250	C	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	silent	c.2721	p.Y907	0.686	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	77	0	0	70	13	15.66	-	-	-	T	109672250	C	T	109672250	2	4	331	1	0	0	0	0	0	0	0	1	10136	547	19	1		1	MYO16	13	109672250	Silent	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	21343479	109672250	5497628	62	36155										
AKAP13	0	genome.wustl.edu	37	chr15	86122377	86122377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cctgtgatttgtcaagcataGttgaggaggagaatacagac	12	6	1	4			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	15	86122377	86122377	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.1078	p.V360I	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	142	0	0	144	46	24.21	-	-	-	A	86122377	G	A	86122377	3	1	331	1	0	0	0	0	1	0	0	0	449	1029	36	4	1100	4	AKAP13	15	86122377	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		86122377	16409015	63	36156										
RCCD1	0	genome.wustl.edu	37	chr15	91504977	91504977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtggaacacctacgtgtatgCtgtggagaaagggaagagct	15	6	0	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	15	91504977	91504977	C	T	SNP	RCCD1	ENST00000394258	human	ensembl	69_37n	1	known	missense	c.1109	p.A370V	0.863	pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCCD1	HGNC	ENSG00000166965	57	0	0	108	15	12.2	-	-	-	T	91504977	C	T	91504977	3	4	331	1	0	0	0	0	1	0	0	0	13258	797	28	4	1135	4	RCCD1	15	91504977	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	5382600	91504977	11026415	64	36157										
ZNF598	0	genome.wustl.edu	37	chr16	2048361	2048361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ggtggggcacacacggcagtCcaggcccgcctgctgggtgg	18	13	0	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	16	2048361	2048361	C	A	SNP	ZNF598	ENST00000431526	human	ensembl	69_37n	-1	known	missense	c.2587	p.D863Y	1.000	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962	10	0	0	0	4	100	-	-	-	A	2048361	C	A	2048361	3	1	331	1	0	0	0	0	1	0	0	0	18124	855	30	2	131	2	ZNF598	16	2048361	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09		2048361	88306392	65	36158										
CHD9	0	genome.wustl.edu	37	chr16	53191289	53191289	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tcggacaagataattcaagtCacattttagatcatgacctt	6	8	3	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	16	53191289	53191289	C	G	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.1288	p.H430D	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	65	0	0	28	9	24.32	-	-	-	G	53191289	C	G	53191289	3	3	331	1	0	0	0	0	1	0	0	0	3361	826	29	2	1290	2	CHD9	16	53191289	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	51142928	53191289	37163464	66	36159										
KCNG4	0	genome.wustl.edu	37	chr16	84271027	84271027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tggacaggagctgactccaaGggctgtgggaaccatagtgg	16	8	0	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	16	84271027	84271027	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	missense	c.65	p.P22L	0.991	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	45	0	0	15	4	21.05	-	-	-	A	84271027	G	A	84271027	3	1	331	1	0	0	0	0	1	0	0	0	8084	1000	35	4	1500	4	KCNG4	16	84271027	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	31079738	84271027	6083726	67	36160										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	17	7578271	7578271	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193L	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	104	0	0	40	42	50.6	-	-	-	A	7578271	T	A	7578271	3	1	331	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09		7578271	73616939	68	36161										
KRTAP1-5	0	genome.wustl.edu	37	chr17	39182972	39182972	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ggaggcctgggcatggtgcaGttggcagcaggatgggggcg	22	7	0	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	17	39182972	39182972	G	C	SNP	KRTAP1-5	ENST00000361883	human	ensembl	69_37n	-1	known	missense	c.436	p.L146V	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-5	HGNC	ENSG00000221852	43	0	0	10	13	56.52	-	-	-	C	39182972	G	C	39182972	3	2	331	1	0	0	0	0	1	0	0	0	8557	1020	36	4	92	4	KRTAP1-5	17	39182972	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	31604701	39182972	42012238	69	36162										
NOL11	0	genome.wustl.edu	37	chr17	65734083	65734083	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgtgcttgcttaaaaattttCttgaggtaagttagactcca	8	6	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	17	65734083	65734083	C	G	SNP	NOL11	ENST00000253247	human	ensembl	69_37n	1	known	missense	c.1524	p.F508L	1.000	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935	134	0	0	192	29	13.12	-	-	-	G	65734083	C	G	65734083	3	3	331	1	0	0	0	0	1	0	0	0	10593	912	32	2	1574	2	NOL11	17	65734083	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	26551111	65734083	15461127	70	36163										
WIPI1	0	genome.wustl.edu	37	chr17	66426165	66426165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ggtacagatgttcctctgtcCggagaagttcaagcgtgcag	13	9	2	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	17	66426165	66426165	C	T	SNP	WIPI1	ENST00000262139	human	ensembl	69_37n	-1	known	missense	c.937	p.G313R	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540	111	0	0	67	33	33	-	-	-	T	66426165	C	T	66426165	3	4	331	1	0	0	0	0	1	0	0	0	17467	661	23	1	423	1	WIPI1	17	66426165	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	692082	66426165	14769045	71	36164										
ITGB4	0	genome.wustl.edu	37	chr17	73736913	73736913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agatctccggtgtacacaagCtccagcagaccaagttccgg	10	13	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	17	73736913	73736913	C	G	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.2590	p.L864V	0.994	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	25	0	0	19	6	24	-	-	-	G	73736913	C	G	73736913	3	3	331	1	0	0	0	0	1	0	0	0	7951	797	28	4	2672	4	ITGB4	17	73736913	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	7310748	73736913	7458297	72	36165										
ZNF532	0	genome.wustl.edu	37	chr18	56586092	56586092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agcaaaactggactctctacGtcaggcaatgtggagaaaaa	10	8	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	18	56586092	56586092	G	T	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	silent	c.573	p.T191	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	397	0	0	369	222	37.56	-	-	-	T	56586092	G	T	56586092	2	4	331	1	0	0	0	0	0	0	0	1	18068	1132	40	3		3	ZNF532	18	56586092	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		56586092	21491156	73	36166										
C19orf10	0	genome.wustl.edu	37	chr19	4668614	4668614	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ttgaacaactcacctcattgGtccctccttgagaggcgtaa	8	12	2	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	4668614	4668614	G	T	SNP	C19orf10	ENST00000262947	human	ensembl	69_37n	-1	known	missense	c.218	p.T73N	1.000	pfam_UPF0556	pfam_UPF0556	-	no_errors	C19orf10	HGNC	ENSG00000074842	10	0	0	10	4	28.57	-	-	-	T	4668614	G	T	4668614	3	4	331	1	0	0	0	0	1	0	0	0	1926	1261	44	4	323	4	C19orf10	19	4668614	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		4668614	54460369	74	36167										
BEST2	0	genome.wustl.edu	37	chr19	12868799	12868800	+	Frame_Shift_Ins	INS	-	-	T													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	catccctgggcctgtcgagcINSccttcagcatcgtgaccatg							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	12868799	12868800	-	T	INS	BEST2	ENST00000042931	human	ensembl	69_37n	1	known	frame_shift_ins	c.1438_1439	p.P480fs	0.157:0.129	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST2	HGNC	ENSG00000039987	13	0	0	1	6	85.71	-	-	-	T	12868800	-	T	12868799	7	5	331	1	0	1	1	0	0	0	0	0	1409	739	26	0	1472	0	BEST2	19	12868799	Frame_Shift_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09	8200185	12868799	46260184	75	36168										
ZNF208	0	genome.wustl.edu	37	chr19	22156700	22156700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	aactaagggttgagggccacTtataggctttgccgcattct	11	9	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	22156700	22156700	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.1136	p.K379R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	321	0	0	259	160	38.19	-	-	-	C	22156700	T	C	22156700	3	2	331	1	0	0	0	0	1	0	0	0	17862	1609	56	5	2710	5	ZNF208	19	22156700	Missense_Mutation	SNP	T	TCGA-AO-A0JD-01A-11W-A071-09	9287901	22156700	36972283	76	36169										
ZNF585B	0	genome.wustl.edu	37	chr19	37681051	37681051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	catccctgaaggacactgatCcctgtaagggcacattcctg	9	13	0	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	37681051	37681051	C	T	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.74	p.G25E	0.410	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	163	0	0	126	27	17.65	-	-	-	T	37681051	C	T	37681051	3	4	331	1	0	0	0	0	1	0	0	0	18114	869	30	2	2247	2	ZNF585B	19	37681051	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	15524351	37681051	21447932	77	36170										
CYP2A13	0	genome.wustl.edu	37	chr19	41600885	41600885	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gcactgaagtgttccctatgCtgggctccgtgctgagagac	13	11	0	3			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	41600885	41600885	C	A	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.1183	p.L395M	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	126	0	0	98	58	37.18	-	-	-	A	41600885	C	A	41600885	3	1	331	1	0	0	0	0	1	0	0	0	4192	796	28	4	1213	4	CYP2A13	19	41600885	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	3919834	41600885	17528098	78	36171										
ATP1A3	0	genome.wustl.edu	37	chr19	42482824	42482824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gaaggcctccttcatttcctCgtccagaggctgctccttgc	9	15	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	42482824	42482824	C	T	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	missense	c.1603	p.E535K	0.997	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	56	0	0	33	9	20.93	-	-	-	T	42482824	C	T	42482824	3	4	331	1	0	0	0	0	1	0	0	0	1134	893	31	1	1525	1	ATP1A3	19	42482824	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	881939	42482824	16646159	79	36172										
ZNF229	0	genome.wustl.edu	37	chr19	44933197	44933197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gaccctctggtggctgtgaaGgtctgaattccgccggaagc	14	11	2	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	44933197	44933197	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	missense	c.1759	p.L587F	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	160	1	0.62	95	23	19.49	-	-	-	A	44933197	G	A	44933197	3	1	331	1	0	0	0	0	1	0	0	0	17878	1000	35	4	722	4	ZNF229	19	44933197	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	2450373	44933197	14195786	80	36173										
BCL3	0	genome.wustl.edu	37	chr19	45259541	45259541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tgccagctgtgcaccggctgGtcaacctcttccagcagggg	13	14	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	45259541	45259541	G	T	SNP	BCL3	ENST00000164227	human	ensembl	69_37n	1	known	missense	c.463	p.V155F	0.031	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BCL3	HGNC	ENSG00000069399	21	0	0	13	4	23.53	-	-	-	T	45259541	G	T	45259541	3	4	331	1	0	0	0	0	1	0	0	0	1379	1261	44	4	473	4	BCL3	19	45259541	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	326344	45259541	13869442	81	36174										
VRK3	0	genome.wustl.edu	37	chr19	50510825	50510825	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ccgcccatggacagagtgtaCcttcatagagaatgccctgg	11	12	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	50510825	50510825	C	A	SNP	VRK3	ENST00000316763	human	ensembl	69_37n	-1	known	splice_site	c.547+1	e3+1	0.992	-	-	-	no_errors	VRK3	HGNC	ENSG00000105053	51	0	0	71	37	34.26	-	-	-	A	50510825	C	A	50510825	5	1	331	1	0	0	0	0	0	0	1	0	17318	521	18	4	916	4	VRK3	19	50510825	Splice_Site	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	5251284	50510825	8618158	82	36175										
ETFB	0	genome.wustl.edu	37	chr19	51857488	51857488	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cgcacagcctcctccaccgcGatctcacagaaggggttcat	9	16	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	51857488	51857488	G	A	SNP	ETFB	ENST00000354232	human	ensembl	69_37n	-1	known	silent	c.405	p.I135	0.961	pfam_ETF_a/b_N,smart_ETF_a/b_N	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379	40	0	0	25	37	58.73	-	-	-	A	51857488	G	A	51857488	2	1	331	1	0	0	0	0	0	0	0	1	5307	1048	37	1		1	ETFB	19	51857488	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	1346663	51857488	7271495	83	36176										
KIR2DS4	0	genome.wustl.edu	37	chr19	55351148	55351148	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gtgatccactgcttgtttccGtcacaggtgaggaaacccca	10	12	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	19	55351148	55351148	G	A	SNP	KIR2DS4	ENST00000339924	human	ensembl	69_37n	1	known	silent	c.636	p.P212	0.078	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIR2DS4	HGNC	ENSG00000221957	262	0	0	133	198	59.64	-	-	-	A	55351148	G	A	55351148	2	1	331	1	0	0	0	0	0	0	0	1	8372	1132	40	1		1	KIR2DS4	19	55351148	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	3493660	55351148	3777835	84	36177										
TMC2	0	genome.wustl.edu	37	chr20	2593995	2593995	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	caccacttcatggacattccGcacaaaggaatttcaactat	5	12	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	20	2593995	2593995	G	A	SNP	TMC2	ENST00000496948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMC2	HGNC	ENSG00000149488	34	0	0	67	21	23.86	-	-	-	A	2593995	G	A	2593995	1	1	331	0	1	0	0	0	0	0	0	0	16080	1102	38	1		1	TMC2	20	2593995	RNA	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		2593995	60431525	85	36178										
PROKR2	0	genome.wustl.edu	37	chr20	5294674	5294674	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	caggagagctgccgtaccacGtagtagtccatctcgaaggg	13	11	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	20	5294674	5294674	G	A	SNP	PROKR2	ENST00000217270	human	ensembl	69_37n	-1	known	silent	c.342	p.Y114	0.886	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292	77	0	0	26	23	46.94	-	-	-	A	5294674	G	A	5294674	2	1	331	1	0	0	0	0	0	0	0	1	12634	1140	40	1		1	PROKR2	20	5294674	Silent	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	2700679	5294674	57730846	86	36179										
FERMT1	0	genome.wustl.edu	37	chr20	6088271	6088271	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ttccataagggagcgtgaggAgtctagccaactagaaaatg	12	7	1	2			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	20	6088271	6088271	A	G	SNP	FERMT1	ENST00000217289	human	ensembl	69_37n	-1	known	missense	c.757	p.S253P	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT1	HGNC	ENSG00000101311	41	0	0	41	22	34.92	-	-	-	G	6088271	A	G	6088271	3	3	331	1	0	0	0	0	1	0	0	0	5863	304	11	5	1316	5	FERMT1	20	6088271	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	793597	6088271	56937249	87	36180										
WFDC8	0	genome.wustl.edu	37	chr20	44180679	44180679	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tactattcaacgtctggggtCcatacatttcagtccacaat	6	11	3	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	20	44180679	44180679	C	G	SNP	WFDC8	ENST00000289953	human	ensembl	69_37n	-1	known	missense	c.712	p.D238H	0.000	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	pfam_Whey_acidic_protein_4-diS_core,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,prints_4-disulphide_core,pfscan_Prot_inh_Kunz-m	-	no_errors	WFDC8	HGNC	ENSG00000158901	232	0	0	283	92	24.53	-	-	-	G	44180679	C	G	44180679	3	3	331	1	0	0	0	0	1	0	0	0	17453	855	30	2	17	2	WFDC8	20	44180679	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	38092408	44180679	18844841	88	36181										
PCK1	0	genome.wustl.edu	37	chr20	56138123	56138123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	gccctgcaacccggagctgaCgctcatcgcccacctgcctg	10	19	1	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	20	56138123	56138123	C	A	SNP	PCK1	ENST00000319441	human	ensembl	69_37n	1	known	missense	c.650	p.T217K	1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253	16	0	0	17	5	22.73	-	-	-	A	56138123	C	A	56138123	3	1	331	1	0	0	0	0	1	0	0	0	11654	536	19	3	664	3	PCK1	20	56138123	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	11957444	56138123	6887397	89	36182										
KRTAP10-9	0	genome.wustl.edu	37	chr21	46047456	46047456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ggcttcttcgtgctgccaacAgtctagctaccagccagctt	9	14	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	21	46047456	46047456	A	C	SNP	KRTAP10-9	ENST00000397911	human	ensembl	69_37n	1	known	missense	c.368	p.Q123P	0.998	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	164	0	0	105	16	13.22	-	-	-	C	46047456	A	C	46047456	3	2	331	1	0	0	0	0	1	0	0	0	8569	188	7	5	370	5	KRTAP10-9	21	46047456	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09		46047456	2082439	90	36183										
PRAME	0	genome.wustl.edu	37	chr22	22890679	22890679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	taccatggatgtcctcataaCtctccagggggacaggatac	10	11	2	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	22	22890679	22890679	C	T	SNP	PRAME	ENST00000398741	human	ensembl	69_37n	-1	known	missense	c.1340	p.S447N	0.537	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	81	0	0	47	35	42.68	-	-	-	T	22890679	C	T	22890679	3	4	331	1	0	0	0	0	1	0	0	0	12501	565	20	4	193	4	PRAME	22	22890679	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09		22890679	28413887	91	36184										
MLC1	0	genome.wustl.edu	37	chr22	50518384	50518384	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	tcaggactagtttgcatccaAaccaaattaaacacgtagtg	7	9	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	22	50518384	50518384	A	G	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	missense	c.386	p.F129S	1.000	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	46	0	0	19	11	36.67	-	-	-	G	50518384	A	G	50518384	3	3	331	1	0	0	0	0	1	0	0	0	9683	14	1	5	779	5	MLC1	22	50518384	Missense_Mutation	SNP	A	TCGA-AO-A0JD-01A-11W-A071-09	27627705	50518384	786182	92	36185										
BCOR	0	genome.wustl.edu	37	chrX	39933528	39933528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	atcctggcatagtgcttgtgGaactccgagtaggtgtctgc	13	9	1	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	39933528	39933528	G	T	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.1071	p.F357L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	21	0	0	12	8	40	-	-	-	T	39933528	G	T	39933528	3	4	331	1	0	0	0	0	1	0	0	0	1390	1165	41	2	4244	2	BCOR	23	39933528	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09		39933528	115337032	93	36186										
ATP7A	0	genome.wustl.edu	37	chrX	77268498	77268499	+	In_Frame_Ins	INS	-	-	CTA													0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	cctactctttgattattcttINSctagttgcaatgtatgagag							TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	77268498	77268499	-	CTA	INS	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	in_frame_ins	c.2295_2296	p.766in_frame_insL	0.998:1.000	tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	237	0	0	200	58	22.48	-	-	-	CTA	77268499	-	CTA	77268498	7	5	331	1	0	1	1	0	0	0	0	0	1194	1770	62	0	2329	0	ATP7A	23	77268498	In_Frame_Ins	INS	-	TCGA-AO-A0JD-01A-11W-A071-09	37334970	77268498	78002062	94	36187										
DOCK11	0	genome.wustl.edu	37	chrX	117758501	117758501	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	ctttcaataattatttttcaGaaccaacaagccaaaatagc	3	9	2	1			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	117758501	117758501	G	A	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	splice_site	c.3472-1	e32-1	1.000	-	-	-	no_errors	DOCK11	HGNC	ENSG00000147251	342	0	0	363	97	21.09	-	-	-	A	117758501	G	A	117758501	5	1	331	1	0	0	0	0	0	0	1	0	4721	956	33	2	3597	2	DOCK11	23	117758501	Splice_Site	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	40490003	117758501	37512059	95	36188										
UPF3B	0	genome.wustl.edu	37	chrX	118971887	118971887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	agtcttctctttctcatagcGctccttctgcctacggcgct	7	15	4	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	118971887	118971887	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	missense	c.1135	p.R379C	1.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	253	0	0	245	113	31.56	-	-	-	A	118971887	G	A	118971887	3	1	331	1	0	0	0	0	1	0	0	0	17103	1087	38	1	324	1	UPF3B	23	118971887	Missense_Mutation	SNP	G	TCGA-AO-A0JD-01A-11W-A071-09	1213386	118971887	36298673	96	36189										
MAGEA10	0	genome.wustl.edu	37	chrX	151303066	151303066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	atctgtggtggcaattctgtCctgggctctctcttcctcat	9	12	5	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	151303066	151303066	C	T	SNP	MAGEA10	ENST00000244096	human	ensembl	69_37n	-1	known	missense	c.1027	p.D343N	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260	195	0	0	128	22	14.57	-	-	-	T	151303066	C	T	151303066	3	4	331	1	0	0	0	0	1	0	0	0	9231	855	30	2	86	2	MAGEA10	23	151303066	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	32331179	151303066	3967494	97	36190										
PNMA5	0	genome.wustl.edu	37	chrX	152159875	152159875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0309278350515464	3	1	0.567149073980366	1.29183955739972	0.267277149806839	1	1	0	acggggttttaccaccacttCccaggagccaccctttcctg	8	16	0	0			TCGA-AO-A0JD-01A-11W-A071-09	TCGA-AO-A0JD-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32	b3d6fcbb-a58c-488b-81d0-3af21736e84f	X	152159875	152159875	C	T	SNP	PNMA5	ENST00000361887	human	ensembl	69_37n	-1	known	missense	c.268	p.E90K	0.967	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883	155	0	0	56	10	15.15	-	-	-	T	152159875	C	T	152159875	3	4	331	1	0	0	0	0	1	0	0	0	12230	864	30	2	1082	2	PNMA5	23	152159875	Missense_Mutation	SNP	C	TCGA-AO-A0JD-01A-11W-A071-09	856809	152159875	3110685	98	36191										
PGLYRP3	0	genome.wustl.edu	37	chr1	153274985	153274985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tacagtgcagcttgtgccagCggtgtggatgatgatgacat	14	7	0	3			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	153274985	153274985	C	T	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	missense	c.628	p.A210T	0.001	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	181	0	0	54	34	38.64	-	-	-	T	153274985	C	T	153274985	3	4	332	1	0	0	0	0	1	0	0	0	11869	768	27	1	409	1	PGLYRP3	1	153274985	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		153274985	95975636	1	36192										
FCER1A	0	genome.wustl.edu	37	chr1	159277697	159277697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	cagacttctgaacccacatcCtaagccaaaccccaaaaaca	3	16	1	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	159277697	159277697	C	T	SNP	FCER1A	ENST00000368115	human	ensembl	69_37n	1	known	missense	c.749	p.P250L	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCER1A	HGNC	ENSG00000179639	142	0	0	153	45	22.73	-	-	-	T	159277697	C	T	159277697	3	4	332	1	0	0	0	0	1	0	0	0	5820	681	24	4	767	4	FCER1A	1	159277697	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	6002712	159277697	89972924	2	36193										
DCAF8	0	genome.wustl.edu	37	chr1	160251960	160251960	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gcctagcccctccatggcctTggtcagctcttcttccgaca	8	17	3	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	160251960	160251960	T	C	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	missense	c.22	p.K8E	1.000	pfam_Pex19	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	86	0	0	72	28	28	-	-	-	C	160251960	T	C	160251960	3	2	332	1	0	0	0	0	1	0	0	0	4308	1821	63	5		5	DCAF8	1	160251960	Missense_Mutation	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09	974263	160251960	88998661	3	36194										
LYST	0	genome.wustl.edu	37	chr1	235973301	235973301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	agaattatgattcaaggtaaCgtcaaacttacaaacttttt	5	6	2	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	235973301	235973301	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.817	p.V273I	0.476	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	123	0	0	74	59	44.36	-	-	-	T	235973301	C	T	235973301	3	4	332	1	0	0	0	0	1	0	0	0	9195	536	19	1	10784	1	LYST	1	235973301	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	75721341	235973301	13277320	4	36195										
PLD5	0	genome.wustl.edu	37	chr1	242253277	242253277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gctgtaaggttttggcatacGgtgaataccagtccctttca	10	9	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	242253277	242253277	G	A	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.1490	p.P497L	0.973	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	452	0	0	238	195	45.03	-	-	-	A	242253277	G	A	242253277	3	1	332	1	0	0	0	0	1	0	0	0	12123	1116	39	1	124	1	PLD5	1	242253277	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	6279976	242253277	6997344	5	36196										
OR2G6	0	genome.wustl.edu	37	chr1	248685560	248685560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aactctttgtggccagtgtaGtctttctaattgtcccggtg	10	9	3	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	1	248685560	248685560	G	A	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	missense	c.613	p.V205I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	234	0	0	203	36	15.06	-	-	-	A	248685560	G	A	248685560	3	1	332	1	0	0	0	0	1	0	0	0	11073	1029	36	4	615	4	OR2G6	1	248685560	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	6432283	248685560	565061	6	36197										
MYT1L	0	genome.wustl.edu	37	chr2	1891341	1891341	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tcacctccccgggataccgtCtttcttctagagcctcctgg	8	16	4	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	2	1891341	1891341	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.2561	p.R854T	0.993	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	166	0	0	104	16	13.33	-	-	-	G	1891341	C	G	1891341	3	3	332	1	0	0	0	0	1	0	0	0	10179	913	32	2	1035	2	MYT1L	2	1891341	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		1891341	241308032	7	36198										
NT5C1B	0	genome.wustl.edu	37	chr2	18765887	18765887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ccgctgctgctgctgctgctCggacagagagttgcggtcca	14	13	0	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	2	18765887	18765887	C	T	SNP	NT5C1B	ENST00000359846	human	ensembl	69_37n	-1	known	missense	c.796	p.E266K	0.386	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013	27	0	0	10	4	28.57	-	-	-	T	18765887	C	T	18765887	3	4	332	1	0	0	0	0	1	0	0	0	10759	893	31	1	1060	1	NT5C1B	2	18765887	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	16874546	18765887	224433486	8	36199										
LRP2	0	genome.wustl.edu	37	chr2	170060576	170060576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ctggttcttcacaacagtgtTgattcccctgggctgggaga	12	10	2	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	2	170060576	170060576	T	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7921	p.N2641D	0.777	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	334	0	0	141	44	23.66	-	-	-	C	170060576	T	C	170060576	3	2	332	1	0	0	0	0	1	0	0	0	9022	1812	63	5	6198	5	LRP2	2	170060576	Missense_Mutation	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09	151294689	170060576	73138797	9	36200										
TTN	0	genome.wustl.edu	37	chr2	179466427	179466427	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tgcagtcttttgtcctgcttTattcttggctgtgatgctgt	10	8	2	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	2	179466427	179466427	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47686	p.K15896E	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	251	0	0	139	44	24.04	-	-	-	C	179466427	T	C	179466427	3	2	332	1	0	0	0	0	1	0	0	0	16832	1763	61	5	52611	5	TTN	2	179466427	Missense_Mutation	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09	9405851	179466427	63732946	10	36201										
ZNF620	0	genome.wustl.edu	37	chr3	40557522	40557522	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ttggataattaagacaaagtCaaagaggagacatttcacag	9	5	2	3			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	3	40557522	40557522	C	G	SNP	ZNF620	ENST00000314529	human	ensembl	69_37n	1	known	nonsense	c.437	p.S146*	0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842	86	0	0	45	15	25	-	-	-	G	40557522	C	G	40557522	4	3	332	1	0	0	0	0	0	1	0	0	18140	838	29	2	451	2	ZNF620	3	40557522	Nonsense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		40557522	157464908	11	36202										
MAGI1	0	genome.wustl.edu	37	chr3	65361490	65361490	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aggttcacaatgtctgaatgGgatttgttggtgatggaaca	13	4	2	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	3	65361490	65361490	G	C	SNP	MAGI1	ENST00000460329	human	ensembl	69_37n	-1	putative	missense	c.2852	p.P951R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,smart_PDZ,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAGI1	HGNC	ENSG00000151276	182	0	0	64	29	31.18	-	-	-	C	65361490	G	C	65361490	3	2	332	1	0	0	0	0	1	0	0	0	9261	1219	43	4	1429	4	MAGI1	3	65361490	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	24803968	65361490	132660940	12	36203										
DNAH5	0	genome.wustl.edu	37	chr5	13862717	13862717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ccatgttggcgatgatttccGaggtactgtctcctctcaag	10	11	2	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	5	13862717	13862717	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.4736	p.S1579L	0.941	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	233	1	0.43	240	43	15.19	-	-	-	A	13862717	G	A	13862717	3	1	332	1	0	0	0	0	1	0	0	0	4640	1059	37	1	9342	1	DNAH5	5	13862717	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		13862717	167052543	13	36204										
ATP6V0E1	0	genome.wustl.edu	37	chr5	172410873	172410873	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aggcggcgaccatggcgtatCacggcctcactgtgcctctc	12	15	3	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	5	172410873	172410873	C	G	SNP	ATP6V0E1	ENST00000517669	human	ensembl	69_37n	1	known	missense	c.10	p.H4D	0.000	pirsf_ATPase_V0-cplx_esu_met	pfam_ATPase_V0-cplx_esu,pirsf_ATPase_V0-cplx_esu_met	-	no_errors	ATP6V0E1	HGNC	ENSG00000113732	88	0	0	34	14	29.17	-	-	-	G	172410873	C	G	172410873	3	3	332	1	0	0	0	0	1	0	0	0	1179	826	29	2	12	2	ATP6V0E1	5	172410873	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	158548156	172410873	8504387	14	36205										
BTN1A1	0	genome.wustl.edu	37	chr6	26509153	26509153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	atgaatgatggatctgatatCtatactttctccaatgtcac	6	8	4	3			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	6	26509153	26509153	C	G	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	missense	c.1332	p.I444M	0.981	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	185	0	0	92	33	26.4	-	-	-	G	26509153	C	G	26509153	3	3	332	1	0	0	0	0	1	0	0	0	1568	903	32	2	1358	2	BTN1A1	6	26509153	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		26509153	144605914	15	36206										
TREML1	0	genome.wustl.edu	37	chr6	41121613	41121613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ggtaaccatttccacctgcaGcaggcccccacccaggtctg	9	17	1	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	6	41121613	41121613	G	T	SNP	TREML1	ENST00000426005	human	ensembl	69_37n	-1	known	missense	c.259	p.L87M	1.000	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	TREML1	HGNC	ENSG00000161911	69	0	0	26	4	13.33	-	-	-	T	41121613	G	T	41121613	3	4	332	1	0	0	0	0	1	0	0	0	16568	962	34	4	694	4	TREML1	6	41121613	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	14612460	41121613	129993454	16	36207										
DEFB112	0	genome.wustl.edu	37	chr6	50016314	50016314	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gtggaagatgtatttgtcttTgagtacattttttcaagttt	9	3	2	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	6	50016314	50016314	T	C	SNP	DEFB112	ENST00000322246	human	ensembl	69_37n	-1	known	silent	c.51	p.S17	0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872	89	0	0	46	12	20.69	-	-	-	C	50016314	T	C	50016314	2	2	332	1	0	0	0	0	0	0	0	1	4436	1799	63	5		5	DEFB112	6	50016314	Silent	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09	8894701	50016314	121098753	17	36208										
C6orf165	0	genome.wustl.edu	37	chr6	88136307	88136307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aacagttaggagcccatctgGaacaactaaaaatgaccata	7	9	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	6	88136307	88136307	G	C	SNP	C6orf165	ENST00000369562	human	ensembl	69_37n	1	known	missense	c.904	p.E302Q	1.000	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6orf165	HGNC	ENSG00000213204	42	0	0	13	8	38.1	-	-	-	C	88136307	G	C	88136307	3	2	332	1	0	0	0	0	1	0	0	0	2362	1175	41	2	930	2	C6orf165	6	88136307	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	38119993	88136307	82978760	18	36209										
DSE	0	genome.wustl.edu	37	chr6	116757429	116757429	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	cttttgaggagactgtggtaGatggtgtccatggggctttc	15	6	0	3			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	6	116757429	116757429	G	C	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.1855	p.D619H	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	87	0	0	54	15	21.74	-	-	-	C	116757429	G	C	116757429	3	2	332	1	0	0	0	0	1	0	0	0	4809	942	33	2	1816	2	DSE	6	116757429	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	28621122	116757429	54357638	19	36210										
MLL3	0	genome.wustl.edu	37	chr7	151919733	151919733	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tacattttccacttcttcctCagtatttaagttctgacaaa	3	10	3	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	7	151919733	151919733	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.3358	p.E1120*	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	91	0	0	33	7	17.5	-	-	-	A	151919733	C	A	151919733	4	1	332	1	0	0	0	0	0	1	0	0	9693	835	29	2	11533	2	MLL3	7	151919733	Nonsense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		151919733	7218930	20	36211										
ZNF572	0	genome.wustl.edu	37	chr8	125989495	125989495	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	atacaggagaaaagccttatCaatgtccagaatgtgggaag	11	6	1	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	8	125989495	125989495	C	G	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	missense	c.985	p.Q329E	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	176	0	0	233	85	26.65	-	-	-	G	125989495	C	G	125989495	3	3	332	1	0	0	0	0	1	0	0	0	18100	827	29	2	991	2	ZNF572	8	125989495	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		125989495	20374527	21	36212										
SQLE	0	genome.wustl.edu	37	chr8	126021464	126021464	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gaacttattttagctaacccGagtccagttctcatctacca	5	12	2	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	8	126021464	126021464	G	C	SNP	SQLE	ENST00000265896	human	ensembl	69_37n	1	known	silent	c.987	p.P329	0.044	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549	186	0	0	172	57	24.89	-	-	-	C	126021464	G	C	126021464	2	2	332	1	0	0	0	0	0	0	0	1	15219	1045	37	3		3	SQLE	8	126021464	Silent	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	31969	126021464	20342558	22	36213										
TRIM5	0	genome.wustl.edu	37	chr11	5686165	5686165	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aatccatggtttgtgatattGaagaatgagacagtgcaagc	11	5	0	4			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	11	5686165	5686165	G	A	SNP	TRIM5	ENST00000305836	human	ensembl	69_37n	-1	known	silent	c.1356	p.F452	0.923	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM5	HGNC	ENSG00000132256	247	0	0	219	59	21.22	-	-	-	A	5686165	G	A	5686165	2	1	332	1	0	0	0	0	0	0	0	1	16621	1281	45	2		2	TRIM5	11	5686165	Silent	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		5686165	129320351	23	36214										
OR4D10	0	genome.wustl.edu	37	chr11	59245266	59245266	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tttcggtgatggcattggatCgatatgtggccatctccaag	12	8	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	11	59245266	59245266	C	T	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	nonsense	c.364	p.R122*	0.463	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	265	1	0.38	143	42	22.7	-	-	-	T	59245266	C	T	59245266	4	4	332	1	0	0	0	0	0	1	0	0	11127	876	31	1	366	1	OR4D10	11	59245266	Nonsense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	53559101	59245266	75761250	24	36215										
VWCE	0	genome.wustl.edu	37	chr11	61044093	61044094	+	Frame_Shift_Ins	INS	-	-	G													0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aagtacagcaatccgtctgtINSgggggggtctgacaggggcc							TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	11	61044093	61044094	-	G	INS	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1467_1466	p.Q490fs	0.003:0.008	smart_VWC_out,smart_VWF_C	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	21	0	0	8	2	20	-	-	-	G	61044094	-	G	61044093	7	5	332	1	0	1	1	0	0	0	0	0	17342	1683	59	0	1440	0	VWCE	11	61044093	Frame_Shift_Ins	INS	-	TCGA-AO-A0JE-01A-11W-A071-09	1798827	61044093	73962423	25	36216										
C11orf30	0	genome.wustl.edu	37	chr11	76227289	76227289	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aaaactacgagtggtagcatCattacagtagtacccaaatc	7	9	1	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	11	76227289	76227289	C	G	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	missense	c.1617	p.I539M	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	156	0	0	155	23	12.92	-	-	-	G	76227289	C	G	76227289	3	3	332	1	0	0	0	0	1	0	0	0	1647	816	29	2	1655	2	C11orf30	11	76227289	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	15183196	76227289	58779227	26	36217										
MMP13	0	genome.wustl.edu	37	chr11	102822757	102822757	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ttaccatagagagactggatCccttgtacatcgtcatcagg	9	10	2	2			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	11	102822757	102822757	C	A	SNP	MMP13	ENST00000340273	human	ensembl	69_37n	-1	novel	silent	c.783	p.G261	0.981	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP13	HGNC	ENSG00000137745	453	0	0	421	61	12.63	-	-	-	A	102822757	C	A	102822757	2	1	332	1	0	0	0	0	0	0	0	1	9723	842	30	2		2	MMP13	11	102822757	Silent	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	26595468	102822757	32183759	27	36218										
CIT	0	genome.wustl.edu	37	chr12	120152115	120152115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gaggaatattgtggtgcatgCgttccttaagacgccgacta	12	8	0	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	12	120152115	120152115	C	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.4067	p.R1356H	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	111	0	0	40	11	21.57	-	-	-	T	120152115	C	T	120152115	3	4	332	1	0	0	0	0	1	0	0	0	3468	768	27	1	2080	1	CIT	12	120152115	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		120152115	13699780	28	36219										
IRF9	0	genome.wustl.edu	37	chr14	24633978	24633978	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ctggcccactggagcccacgCagcgcctgctgagccagctt	12	17	0	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	14	24633978	24633978	C	T	SNP	IRF9	ENST00000396864	human	ensembl	69_37n	1	known	nonsense	c.805	p.Q269*	0.880	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	80	0	0	35	4	10.26	-	-	-	T	24633978	C	T	24633978	4	4	332	1	0	0	0	0	0	1	0	0	7891	711	25	4	827	4	IRF9	14	24633978	Nonsense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		24633978	82715562	29	36220										
BLM	0	genome.wustl.edu	37	chr15	91346773	91346773	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	agtaagagtgcaaaaatccaGtcaggtatatttggaaaagg	11	4	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	15	91346773	91346773	G	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.3381	p.Q1127H	1.000	pfam_RQC_domain,smart_RQC_domain,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	126	0	0	100	24	19.35	-	-	-	T	91346773	G	T	91346773	3	4	332	1	0	0	0	0	1	0	0	0	1450	1020	36	4	3447	4	BLM	15	91346773	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		91346773	11184619	30	36221										
COX10	0	genome.wustl.edu	37	chr17	14095383	14095383	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gaccttgggggtgaatccacTcacaggagccctggggctct	14	12	2	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	17	14095383	14095383	T	A	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	missense	c.773	p.L258H	1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	177	1	0.56	58	8	12.12	-	-	-	A	14095383	T	A	14095383	3	1	332	1	0	0	0	0	1	0	0	0	3792	1551	54	5	795	5	COX10	17	14095383	Missense_Mutation	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09		14095383	67099827	31	36222										
SLC6A4	0	genome.wustl.edu	37	chr17	28545924	28545924	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	attcccccaaaaatggccatGatggtgtaggggaggaggaa	14	7	0	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	17	28545924	28545924	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	69_37n	-1	known	silent	c.369	p.I123	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	184	0	0	146	34	18.78	-	-	-	A	28545924	G	A	28545924	2	1	332	1	0	0	0	0	0	0	0	1	14775	1280	45	2		2	SLC6A4	17	28545924	Silent	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	14450541	28545924	52649286	32	36223										
MIB1	0	genome.wustl.edu	37	chr18	19348649	19348649	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	aggaatctttgcaggtgccaGagtggtgcgaggagtggact	17	6	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	18	19348649	19348649	G	C	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.467	p.R156T	1.000	pfam_Mib_Herc2	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	41	0	0	18	11	37.93	-	-	-	C	19348649	G	C	19348649	3	2	332	1	0	0	0	0	1	0	0	0	9637	942	33	2	477	2	MIB1	18	19348649	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		19348649	58728599	33	36224										
PPP2R1A	0	genome.wustl.edu	37	chr19	52729060	52729060	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	tttgcccaggaggctctgacTggtaagacctagaaagcacg	12	10	1	3			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	19	52729060	52729060	T	G	SNP	PPP2R1A	ENST00000322088	human	ensembl	69_37n	1	known	silent	c.1752	p.T584	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	167	1	0.6	78	63	44.37	-	-	-	G	52729060	T	G	52729060	2	3	332	1	0	0	0	0	0	0	0	1	12459	1594	55	5		5	PPP2R1A	19	52729060	Silent	SNP	T	TCGA-AO-A0JE-01A-11W-A071-09		52729060	6399923	34	36225										
ZNF587	0	genome.wustl.edu	37	chr19	58370864	58370864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gggaatgtgggaaatcttttCgtcagaagttctgctttatt	11	5	3	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	19	58370864	58370864	C	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.1084	p.R362C	0.126	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	432	0	0	464	67	12.55	-	-	-	T	58370864	C	T	58370864	3	4	332	1	0	0	0	0	1	0	0	0	18116	884	31	1	1094	1	ZNF587	19	58370864	Missense_Mutation	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09	5641804	58370864	758119	35	36226										
SNAP25	0	genome.wustl.edu	37	chr20	10277623	10277623	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ctggggcaataatcaggacgGagtggtggccagccagcctg	16	10	1	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	20	10277623	10277623	G	C	SNP	SNAP25	ENST00000254976	human	ensembl	69_37n	1	known	missense	c.332	p.G111A	1.000	pfam_SNAP-25	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639	62	0	0	41	7	14.58	-	-	-	C	10277623	G	C	10277623	3	2	332	1	0	0	0	0	1	0	0	0	14919	1174	41	2	472	2	SNAP25	20	10277623	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		10277623	52747897	36	36227										
WFDC5	0	genome.wustl.edu	37	chr20	43739335	43739335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	agcagcacttcctggtcaagGgacactggctgtcttccacg	11	13	2	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	20	43739335	43739335	G	A	SNP	WFDC5	ENST00000307971	human	ensembl	69_37n	-1	known	missense	c.167	p.P56L	0.983	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC5	HGNC	ENSG00000175121	48	0	0	20	11	35.48	-	-	-	A	43739335	G	A	43739335	3	1	332	1	0	0	0	0	1	0	0	0	17451	1232	43	4	216	4	WFDC5	20	43739335	Missense_Mutation	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09	33461712	43739335	19286185	37	36228										
DOPEY2	0	genome.wustl.edu	37	chr21	37617884	37617884	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	gaggaggcggacttggagctCcaggccctcaccacatccag	13	14	1	0			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	21	37617884	37617884	C	T	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	silent	c.3606	p.L1202	0.221	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	36	0	0	10	5	33.33	-	-	-	T	37617884	C	T	37617884	2	4	332	1	0	0	0	0	0	0	0	1	4743	842	30	2		2	DOPEY2	21	37617884	Silent	SNP	C	TCGA-AO-A0JE-01A-11W-A071-09		37617884	10512011	38	36229										
MORC4	0	genome.wustl.edu	37	chrX	106205310	106205310	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.256410256410256	10	0.0171262072176402	2.62720664589823	4.72897196261682	0.945794392523365	0.0360748418360478	0.289190125538154	6	ttttccttccagtaagcattGagcttctgggcaagggcatt	10	9	1	1			TCGA-AO-A0JE-01A-11W-A071-09	TCGA-AO-A0JE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4f311714-ebb4-47fb-b471-62c6951d9066	f08265fa-cf7d-4d5b-a516-a319b0595cc1	X	106205310	106205310	G	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	silent	c.1188	p.L396	0.995	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	297	0	0	224	68	23.29	-	-	-	T	106205310	G	T	106205310	2	4	332	1	0	0	0	0	0	0	0	1	9776	1277	45	2		2	MORC4	23	106205310	Silent	SNP	G	TCGA-AO-A0JE-01A-11W-A071-09		106205310	49065250	39	36230										
EPHX1	0	genome.wustl.edu	37	chr1	226026417	226026417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ccgcaggccataccccgaagCccttgctgatggtgcacggc	12	16	0	1			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	1	226026417	226026417	C	T	SNP	EPHX1	ENST00000272167	human	ensembl	69_37n	1	known	missense	c.427	p.P143S	0.995	pfam_Epoxide_hydro_N,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	131	0	0	186	37	16.52	-	-	-	T	226026417	C	T	226026417	3	4	333	1	0	0	0	0	1	0	0	0	5216	739	26	4	437	4	EPHX1	1	226026417	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		226026417	23224204	1	36231										
ZNF692	0	genome.wustl.edu	37	chr1	249151656	249151656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ctgtgggcatgagacaagagCaccagatactgcagaccttt	11	10	0	4			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	1	249151656	249151656	C	T	SNP	ZNF692	ENST00000477070	human	ensembl	69_37n	-1	known	missense	c.41	p.C14Y	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF692	HGNC	ENSG00000171163	38	0	0	68	13	16.05	-	-	-	T	249151656	C	T	249151656	3	4	333	1	0	0	0	0	1	0	0	0	18193	697	25	4	1343	4	ZNF692	1	249151656	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09	23125239	249151656	98965	2	36232										
FAM136A	0	genome.wustl.edu	37	chr2	70524439	70524439	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ttttattttccaattgataaGagagcctccttcatcttctt	4	9	3	2			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	2	70524439	70524439	G	A	SNP	FAM136A	ENST00000037869	human	ensembl	69_37n	-1	known	silent	c.399	p.L133	0.812	pfam_DUF842_euk	pfam_DUF842_euk	-	no_errors	FAM136A	HGNC	ENSG00000035141	110	0	0	87	26	23.01	-	-	-	A	70524439	G	A	70524439	2	1	333	1	0	0	0	0	0	0	0	1	5490	929	33	2		2	FAM136A	2	70524439	Silent	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09		70524439	172674934	3	36233										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	135	0	0	135	38	21.97	-	-	-	A	178928079	G	A	178928079	3	1	333	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09		178928079	19094351	4	36234										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	88	0	0	64	19	22.89	-	-	-	A	178936091	G	A	178936091	3	1	333	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09	8012	178936091	19086339	5	36235										
FGFR3	0	genome.wustl.edu	37	chr4	1806180	1806181	+	Frame_Shift_Ins	INS	-	-	C													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	acgctctgccgcctgcgcagINScccccccaagaaaggcctgg							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	4	1806180	1806181	-	C	INS	FGFR3	ENST00000340107	human	ensembl	69_37n	1	known	frame_shift_ins	c.1205_1206	p.K405fs	0.996:0.987	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR3	HGNC	ENSG00000068078	20	0	0	17	3	15	-	-	-	C	1806181	-	C	1806180	7	5	333	1	0	1	1	0	0	0	0	0	5913	971	34	0	1384	0	FGFR3	4	1806180	Frame_Shift_Ins	INS	-	TCGA-AO-A0JF-01A-11W-A071-09		1806180	189348096	6	36236										
MAP3K1	0	genome.wustl.edu	37	chr5	56183347	56183347	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	attgcatttatggcacctgaGgtgagaagcatctttgagtg	12	6	1	3			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	5	56183347	56183347	G	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	silent	c.4257	p.E1419	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	302	0	0	262	58	18.12	-	-	-	A	56183347	G	A	56183347	2	1	333	1	0	0	0	0	0	0	0	1	9314	1014	35	4		4	MAP3K1	5	56183347	Silent	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09		56183347	124731913	7	36237										
RNF14	0	genome.wustl.edu	37	chr5	141359713	141359714	+	In_Frame_Ins	INS	-	-	AGG													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gagttagtggaagcagagttINSatttgcccgttatgaccgcc							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	5	141359713	141359714	-	AGG	INS	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	in_frame_ins	c.860_861	p.288in_frame_insG	1.000:0.980	NULL	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	86	0	0	98	18	15.52	-	-	-	AGG	141359714	-	AGG	141359713	7	5	333	1	0	1	1	0	0	0	0	0	13529	1764	61	0	874	0	RNF14	5	141359713	In_Frame_Ins	INS	-	TCGA-AO-A0JF-01A-11W-A071-09	85176366	141359713	39555547	8	36238										
EDN1	0	genome.wustl.edu	37	chr6	12296218	12296218	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ggagaccatgagaaacagcgTcaaatcatcttttcatgatc	8	9	4	3			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	12296218	12296218	T	A	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	missense	c.557	p.V186D	1.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	299	0	0	246	47	16.04	-	-	-	A	12296218	T	A	12296218	3	1	333	1	0	0	0	0	1	0	0	0	4951	1667	58	5	575	5	EDN1	6	12296218	Missense_Mutation	SNP	T	TCGA-AO-A0JF-01A-11W-A071-09		12296218	158818849	9	36239										
HLA-C	0	genome.wustl.edu	37	chr6	31239010	31239010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gcggcggtccaggagcgcagGtcctcgttcagggcgatgta	17	11	1	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	31239010	31239010	G	A	SNP	HLA-C	ENST00000415537	human	ensembl	69_37n	-1	novel	missense	c.457	p.P153S	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-C	HGNC	ENSG00000204525	15	0	0	18	6	25	-	-	-	A	31239010	G	A	31239010	3	1	333	1	0	0	0	0	1	0	0	0	7248	1252	44	4	665	4	HLA-C	6	31239010	Missense_Mutation	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09	18942792	31239010	139876057	10	36240										
PKHD1	0	genome.wustl.edu	37	chr6	51944778	51944778	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gtatgcttccaggaagtacaGaccctcatgtgcttcagaca	9	11	2	2			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	51944778	51944778	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.310	p.L104	0.001	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	241	0	0	144	34	19.1	-	-	-	A	51944778	G	A	51944778	2	1	333	1	0	0	0	0	0	0	0	1	12045	933	33	2		2	PKHD1	6	51944778	Silent	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09	20705768	51944778	119170289	11	36241										
ZNF292	0	genome.wustl.edu	37	chr6	87967879	87967879	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gggtgccgaaatgctttctcAtgtttcaacaggttgtgtct	11	8	3	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	87967879	87967879	A	G	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.4532	p.H1511R	0.990	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	117	0	0	68	22	24.44	-	-	-	G	87967879	A	G	87967879	3	3	333	1	0	0	0	0	1	0	0	0	17922	217	8	5	4562	5	ZNF292	6	87967879	Missense_Mutation	SNP	A	TCGA-AO-A0JF-01A-11W-A071-09	36023101	87967879	83147188	12	36242										
ABCF2	0	genome.wustl.edu	37	chr7	150921061	150921061	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gcctctttctccagcatggcCcgctctgtgtcgacttccat	8	16	3	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	7	150921061	150921061	C	T	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	silent	c.507	p.R169	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	55	0	0	104	24	18.75	-	-	-	T	150921061	C	T	150921061	2	4	333	1	0	0	0	0	0	0	0	1	66	610	22	4		4	ABCF2	7	150921061	Silent	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		150921061	8217602	13	36243										
MLL3	0	genome.wustl.edu	37	chr7	151945622	151945622	+	Frame_Shift_Del	DEL	C	C	-													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gccacaaatatgcttcacttCagaagacattttcaggtctt							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	7	151945622	151945622	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.1897	p.E633fs	0.982	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	196	0	0	148	33	17.93	-	-	-	-	151945622	C	-	151945622	7	5	333	1	0	1	0	1	0	0	0	0	9693	835	29	0	13022	0	MLL3	7	151945622	Frame_Shift_Del	DEL	C	TCGA-AO-A0JF-01A-11W-A071-09	1024561	151945622	7193041	14	36244										
PEX2	0	genome.wustl.edu	37	chr8	77895511	77895511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	tagtttctaaagagcatttaCttctgacatctcgattcctg	6	9	3	2			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	8	77895511	77895511	C	T	SNP	PEX2	ENST00000357039	human	ensembl	69_37n	-1	known	missense	c.904	p.V302I	1.000	NULL	pfam_Pex_N,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX2	HGNC	ENSG00000164751	310	0	0	295	61	17.13	-	-	-	T	77895511	C	T	77895511	3	4	333	1	0	0	0	0	1	0	0	0	11819	565	20	4	17	4	PEX2	8	77895511	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		77895511	68468511	15	36245										
MUC5B	0	genome.wustl.edu	37	chr11	1266173	1266173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	acagaccagtggtactccccCatcactgaccaccacggcca	7	18	1	2			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	11	1266173	1266173	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8072	p.P2691L	0.011	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	22	0	0	22	4	15.38	-	-	-	T	1266173	C	T	1266173	3	4	333	1	0	0	0	0	1	0	0	0	10051	594	21	4	8194	4	MUC5B	11	1266173	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		1266173	133740343	16	36246										
HAL	0	genome.wustl.edu	37	chr12	96380925	96380925	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	cagcctgccgtgcaatagcaCtggctcgctctacagcttca	9	15	2	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	12	96380925	96380925	C	G	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.971	p.S324T	1.000	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	114	0	0	113	16	12.4	-	-	-	G	96380925	C	G	96380925	3	3	333	1	0	0	0	0	1	0	0	0	6998	565	20	4	1042	4	HAL	12	96380925	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		96380925	37470970	17	36247										
NAA30	0	genome.wustl.edu	37	chr14	57858091	57858092	+	Frame_Shift_Del	DEL	CT	CT	-													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	acactcgggcgagaggccccCtcactccctctctagtaatg							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	14	57858091	57858092	CT	-	DEL	NAA30	ENST00000556492	human	ensembl	69_37n	1	known	frame_shift_del	c.416_417	p.H140fs	0.911:0.880	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA30	HGNC	ENSG00000139977	32	0	0	15	21	58.33	-	-	-	-	57858092	CT	-	57858091	7	5	333	1	0	1	0	1	0	0	0	0	10194	681	24	0	418	0	NAA30	14	57858091	Frame_Shift_Del	DEL	CT	TCGA-AO-A0JF-01A-11W-A071-09		57858091	49491449	18	36248										
IGDCC4	0	genome.wustl.edu	37	chr15	65681239	65681240	+	Frame_Shift_Ins	INS	-	-	G													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	atctccccgttgggctctgtINSgggggggcaccagtgcagcc							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	15	65681239	65681240	-	G	INS	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.2614_2613	p.T871fs	0.007:0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	23	0	0	25	4	13.79	-	-	-	G	65681240	-	G	65681239	7	5	333	1	0	1	1	0	0	0	0	0	7623	1696	59	0	1162	0	IGDCC4	15	65681239	Frame_Shift_Ins	INS	-	TCGA-AO-A0JF-01A-11W-A071-09		65681239	36850153	19	36249										
MAP2K4	0	genome.wustl.edu	37	chr17	12044530	12044530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	catgctatgtttgtaaaatcCtggatcaaatgccagctact	7	9	1	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	17	12044530	12044530	C	G	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.1186	p.L396V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	189	0	0	123	26	17.45	-	-	-	G	12044530	C	G	12044530	3	3	333	1	0	0	0	0	1	0	0	0	9310	680	24	4	1195	4	MAP2K4	17	12044530	Missense_Mutation	SNP	C	TCGA-AO-A0JF-01A-11W-A071-09		12044530	69150680	20	36250										
TNS4	0	genome.wustl.edu	37	chr17	38643408	38643408	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gttctggtgtcctggggtccGctggggtggagaagaccctg	18	9	1	2			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	17	38643408	38643408	G	T	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	silent	c.1168	p.R390	0.019	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	82	0	0	79	22	21.78	-	-	-	T	38643408	G	T	38643408	2	4	333	1	0	0	0	0	0	0	0	1	16440	1086	38	3		3	TNS4	17	38643408	Silent	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09	26598878	38643408	42551802	21	36251										
ETS2	0	genome.wustl.edu	37	chr21	40186843	40186843	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ccttggcaaggaacgctttcTggagctggcacctgactttg	12	11	1	1			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	21	40186843	40186843	T	C	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.443	p.L148P	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	91	0	0	69	27	28.12	-	-	-	C	40186843	T	C	40186843	3	2	333	1	0	0	0	0	1	0	0	0	5313	1580	55	5	457	5	ETS2	21	40186843	Missense_Mutation	SNP	T	TCGA-AO-A0JF-01A-11W-A071-09		40186843	7943052	22	36252										
CABIN1	0	genome.wustl.edu	37	chr22	24480534	24480534	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	ttctgtctttttttcaaggtGgatcttatatgggaggatgc	11	5	4	0			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	22	24480534	24480534	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	silent	c.2913	p.V971	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	131	0	0	136	29	17.58	-	-	-	A	24480534	G	A	24480534	2	1	333	1	0	0	0	0	0	0	0	1	2553	1335	47	4		4	CABIN1	22	24480534	Silent	SNP	G	TCGA-AO-A0JF-01A-11W-A071-09		24480534	26824032	23	36253										
MAGED2	0	genome.wustl.edu	37	chrX	54841196	54841197	+	Frame_Shift_Ins	INS	-	-	T													0.166666666666667	4	0.535437381472753	1.64285714285714	0	1.91666666666667	0.0285714285714286	0.251737451737452	0	gcaagatgaaagtcctcaagINStttgcctgcaaggtaattgg							TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	X	54841196	54841197	-	T	INS	MAGED2	ENST00000218439	human	ensembl	69_37n	1	known	frame_shift_ins	c.1374_1375	p.A459fs	1.000:1.000	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	90	0	0	70	16	18.6	-	-	-	T	54841197	-	T	54841196	7	5	333	1	0	1	1	0	0	0	0	0	9255	1020	36	0	1412	0	MAGED2	23	54841196	Frame_Shift_Ins	INS	-	TCGA-AO-A0JF-01A-11W-A071-09		54841196	100429364	24	36254										
OR2G3	0	genome.wustl.edu	37	chr1	247769321	247769321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acggctttgccaacagctggCatctatctcctggctcagtg	10	13	3	0			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	247769321	247769321	C	T	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.434	p.A145V	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	586	0	0	353	250	41.46	-	-	-	T	247769321	C	T	247769321	3	4	334	1	0	0	0	0	1	0	0	0	11072	710	25	4	436	4	OR2G3	1	247769321	Missense_Mutation	SNP	C	TCGA-AO-A0JI-01A-21W-A100-09		247769321	1481300	1	36255										
OR2T33	0	genome.wustl.edu	37	chr1	248436408	248436408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacatgtgaagagcaggtggCaaaggccttcttgcgggctt	14	9	1	2			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	248436408	248436408	C	A	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.709	p.A237S	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	222	0	0	142	82	36.61	-	-	-	A	248436408	C	A	248436408	3	1	334	1	0	0	0	0	1	0	0	0	11097	710	25	4	256	4	OR2T33	1	248436408	Missense_Mutation	SNP	C	TCGA-AO-A0JI-01A-21W-A100-09	667087	248436408	814213	2	36256										
COL7A1	0	genome.wustl.edu	37	chr3	48609590	48609590	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgcggccctggcagtcctcgGtcacctttggctccctgttg	12	16	1	0			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	48609590	48609590	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.6993	p.D2331	0.990	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	35	0	0	19	6	24	-	-	-	A	48609590	G	A	48609590	2	1	334	1	0	0	0	0	0	0	0	1	3734	1252	44	4		4	COL7A1	3	48609590	Silent	SNP	G	TCGA-AO-A0JI-01A-21W-A100-09		48609590	149412840	3	36257										
PRICKLE2	0	genome.wustl.edu	37	chr3	64133064	64133064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cagtgacagggggtctacgtCggctgacagccggttagaac	15	10	1	3			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	64133064	64133064	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	missense	c.1102	p.D368N	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	108	0	0	34	40	54.05	-	-	-	T	64133064	C	T	64133064	3	4	334	1	0	0	0	0	1	0	0	0	12568	884	31	1	1440	1	PRICKLE2	3	64133064	Missense_Mutation	SNP	C	TCGA-AO-A0JI-01A-21W-A100-09	15523474	64133064	133889366	4	36258										
SLC4A4	0	genome.wustl.edu	37	chr4	72429510	72429510	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cttgtacatttttttcacagTctgactgcccatactcagaa	5	11	3	2			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	4	72429510	72429510	T	C	SNP	SLC4A4	ENST00000264485	human	ensembl	69_37n	1	known	missense	c.3100	p.S1034P	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	186	0	0	120	84	41.18	-	-	-	C	72429510	T	C	72429510	3	2	334	1	0	0	0	0	1	0	0	0	14745	1681	58	5	3311	5	SLC4A4	4	72429510	Missense_Mutation	SNP	T	TCGA-AO-A0JI-01A-21W-A100-09		72429510	118724766	5	36259										
CDH17	0	genome.wustl.edu	37	chr8	95158390	95158391	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	gacacagagctcaaggaagaINScccccctaaggaattgaatg							TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	8	95158390	95158391	-	C	INS	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1933_1932	p.S644fs	0.027:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	121	0	0	113	49	30.25	-	-	-	C	95158391	-	C	95158390	7	5	334	1	0	1	1	0	0	0	0	0	3131	275	10	0	581	0	CDH17	8	95158390	Frame_Shift_Ins	INS	-	TCGA-AO-A0JI-01A-21W-A100-09		95158390	51205632	6	36260										
SLC45A4	0	genome.wustl.edu	37	chr8	142228731	142228731	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtggcggggtaggaggcgtcGtggaagatggagggctcgat	22	5	0	1			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	8	142228731	142228731	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	silent	c.1008	p.H336	0.363	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	25	0	0	1	12	85.71	-	-	-	A	142228731	G	A	142228731	2	1	334	1	0	0	0	0	0	0	0	1	14732	1136	40	1		1	SLC45A4	8	142228731	Silent	SNP	G	TCGA-AO-A0JI-01A-21W-A100-09	47070341	142228731	4135291	7	36261										
PTAR1	0	genome.wustl.edu	37	chr9	72338284	72338284	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtcctgggtaggaatcaataAgatcagtgctgaattcaact	10	7	3	2			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	9	72338284	72338284	A	C	SNP	PTAR1	ENST00000340434	human	ensembl	69_37n	-1	known	missense	c.905	p.L302R	1.000	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647	341	0	0	227	118	34.2	-	-	-	C	72338284	A	C	72338284	3	2	334	1	0	0	0	0	1	0	0	0	12804	72	3	5	315	5	PTAR1	9	72338284	Missense_Mutation	SNP	A	TCGA-AO-A0JI-01A-21W-A100-09		72338284	68875147	8	36262										
PFKP	0	genome.wustl.edu	37	chr10	3172105	3172106	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	NA	0	1	1	0	tgtggctacctggccaacatINSgggggggctcgcggccggag							TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	3172105	3172106	-	G	INS	PFKP	ENST00000381125	human	ensembl	69_37n	1	known	frame_shift_ins	c.1778_1779	p.L596fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	24	0	0	13	2	13.33	-	-	-	G	3172106	-	G	3172105	7	5	334	1	0	1	1	0	0	0	0	0	11840	1464	51	0	1844	0	PFKP	10	3172105	Frame_Shift_Ins	INS	-	TCGA-AO-A0JI-01A-21W-A100-09		3172105	132362642	9	36263										
SYNPO2L	0	genome.wustl.edu	37	chr10	75408227	75408227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctggagtctgcgcgctggcGctgctgttcaaagagctgca	15	11	2	1			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	75408227	75408227	G	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	missense	c.1183	p.R395C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	33	0	0	26	5	16.13	-	-	-	A	75408227	G	A	75408227	3	1	334	1	0	0	0	0	1	0	0	0	15550	1087	38	1	1754	1	SYNPO2L	10	75408227	Missense_Mutation	SNP	G	TCGA-AO-A0JI-01A-21W-A100-09	72236122	75408227	60126520	10	36264										
OVCH1	0	genome.wustl.edu	37	chr12	29604408	29604408	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cttgctgaaactctgagcacCcaagaacattccagtcttcc	6	14	2	3			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	12	29604408	29604408	C	T	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	nonsense	c.2625	p.W875*	0.802	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	63	0	0	60	32	34.78	-	-	-	T	29604408	C	T	29604408	4	4	334	1	0	0	0	0	0	1	0	0	11396	624	22	4	807	4	OVCH1	12	29604408	Nonsense_Mutation	SNP	C	TCGA-AO-A0JI-01A-21W-A100-09		29604408	104247487	11	36265										
CDH11	0	genome.wustl.edu	37	chr16	65032486	65032486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacattggacctctcaggcaCgttggcatgataggtctcgt	11	11	2	1			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	16	65032486	65032486	C	T	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.502	p.V168M	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	295	0	0	46	95	67.38	-	-	-	T	65032486	C	T	65032486	3	4	334	1	0	0	0	0	1	0	0	0	3126	536	19	1	1928	1	CDH11	16	65032486	Missense_Mutation	SNP	C	TCGA-AO-A0JI-01A-21W-A100-09		65032486	25322267	12	36266										
GSPT2	0	genome.wustl.edu	37	chrX	51488353	51488353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aggttataatgcggtgctgcAcattcatacttgtattgagg	11	6	1	1			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	X	51488353	51488353	A	C	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	missense	c.1631	p.H544P	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	286	0	0	162	125	43.4	-	-	-	C	51488353	A	C	51488353	3	2	334	1	0	0	0	0	1	0	0	0	6878	159	6	5	1633	5	GSPT2	23	51488353	Missense_Mutation	SNP	A	TCGA-AO-A0JI-01A-21W-A100-09		51488353	103782207	13	36267										
PADI3	0	genome.wustl.edu	37	chr1	17609568	17609568	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ttcaagtggtggaacatggtGccctgagacagctcccaccc							TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	17609568	17609568	G	-	DEL	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	frame_shift_del	c.1989	p.*665fs	0.996	NULL	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	46	0	0	24	11	31.43	-	-	-	-	17609568	G	-	17609568	7	5	335	1	0	1	0	1	0	0	0	0	11452	1306	46	0	2051	0	PADI3	1	17609568	Frame_Shift_Del	DEL	G	TCGA-AO-A0JJ-01A-11W-A071-09		17609568	231641053	1	36268										
SYPL2	0	genome.wustl.edu	37	chr1	110020512	110020512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cctggggcaagggcctgaccGatgtcaagggggccacacga	16	12	1	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	110020512	110020512	G	A	SNP	SYPL2	ENST00000369872	human	ensembl	69_37n	1	known	missense	c.529	p.D177N	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYPL2	HGNC	ENSG00000143028	27	0	0	45	15	25	-	-	-	A	110020512	G	A	110020512	3	1	335	1	0	0	0	0	1	0	0	0	15555	1058	37	1	547	1	SYPL2	1	110020512	Missense_Mutation	SNP	G	TCGA-AO-A0JJ-01A-11W-A071-09	92410944	110020512	139230109	2	36269										
ACTG2	0	genome.wustl.edu	37	chr2	74146651	74146651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagcagatgtggatcagcaaGcctgagtatgatgaggcagg	15	7	1	4			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	74146651	74146651	G	T	SNP	ACTG2	ENST00000345517	human	ensembl	69_37n	1	known	missense	c.1080	p.K360N	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG2	HGNC	ENSG00000163017	193	0	0	128	45	26.01	-	-	-	T	74146651	G	T	74146651	3	4	335	1	0	0	0	0	1	0	0	0	197	962	34	4	1110	4	ACTG2	2	74146651	Missense_Mutation	SNP	G	TCGA-AO-A0JJ-01A-11W-A071-09		74146651	169052722	3	36270										
MERTK	0	genome.wustl.edu	37	chr2	112786351	112786351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggaatggggtctcctggtcCcattcgagcatgctgccctt	12	12	1	0			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	112786351	112786351	C	T	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	silent	c.2910	p.S970	0.348	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	102	0	0	33	15	31.25	-	-	-	T	112786351	C	T	112786351	2	4	335	1	0	0	0	0	0	0	0	1	9550	610	22	4		4	MERTK	2	112786351	Silent	SNP	C	TCGA-AO-A0JJ-01A-11W-A071-09	38639700	112786351	130413022	4	36271										
STK32B	0	genome.wustl.edu	37	chr4	5399971	5399971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atatcctgctggatgaacacGgtaagcctgctactaatcct	8	11	0	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	4	5399971	5399971	G	A	SNP	STK32B	ENST00000282908	human	ensembl	69_37n	1	known	missense	c.472	p.G158R	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32B	HGNC	ENSG00000152953	153	0	0	51	17	25	-	-	-	A	5399971	G	A	5399971	3	1	335	1	0	0	0	0	1	0	0	0	15389	1130	39	1	490	1	STK32B	4	5399971	Missense_Mutation	SNP	G	TCGA-AO-A0JJ-01A-11W-A071-09		5399971	185754305	5	36272										
ERBB2IP	0	genome.wustl.edu	37	chr5	65370946	65370946	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcaggcatctgtggcaaggcAtccctctagagaacaactaa	9	11	3	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	5	65370946	65370946	A	T	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.3851	p.H1284L	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	388	0	0	176	51	22.27	-	-	-	T	65370946	A	T	65370946	3	4	335	1	0	0	0	0	1	0	0	0	5244	217	8	5	3806	5	ERBB2IP	5	65370946	Missense_Mutation	SNP	A	TCGA-AO-A0JJ-01A-11W-A071-09		65370946	115544314	6	36273										
ACTB	0	genome.wustl.edu	37	chr7	5567503	5567503	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgatccacacggagtacttgCgctcaggaggagcaatgatc	12	11	1	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	7	5567503	5567503	C	G	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	missense	c.1004	p.R335P	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	35	0	0	25	12	32.43	-	-	-	G	5567503	C	G	5567503	3	3	335	1	0	0	0	0	1	0	0	0	193	768	27	3	127	3	ACTB	7	5567503	Missense_Mutation	SNP	C	TCGA-AO-A0JJ-01A-11W-A071-09		5567503	153571160	7	36274										
C10orf71	0	genome.wustl.edu	37	chr10	50532174	50532174	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgcttgatgagaaaactagAggtaaggttgatggaaagca	14	3	0	4			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	10	50532174	50532174	A	G	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	silent	c.1584	p.R528	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	177	0	0	79	23	22.55	-	-	-	G	50532174	A	G	50532174	2	3	335	1	0	0	0	0	0	0	0	1	1624	301	11	5		5	C10orf71	10	50532174	Silent	SNP	A	TCGA-AO-A0JJ-01A-11W-A071-09		50532174	85002573	8	36275										
UNC13C	0	genome.wustl.edu	37	chr15	54825146	54825146	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taattgaagagtgtataaaaCagatgagtttcgaactaaat	8	3	0	4			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	15	54825146	54825146	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	nonsense	c.5578	p.Q1860*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	83	0	0	49	23	31.94	-	-	-	T	54825146	C	T	54825146	4	4	335	1	0	0	0	0	0	1	0	0	17083	479	17	4	5672	4	UNC13C	15	54825146	Nonsense_Mutation	SNP	C	TCGA-AO-A0JJ-01A-11W-A071-09		54825146	47706246	9	36276										
CPT1C	0	genome.wustl.edu	37	chr19	50208555	50208555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggattccaggggtccaaaaaGgtgagaccctctcctgtccc	11	13	1	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	19	50208555	50208555	G	T	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.964	p.D322Y	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	48	0	0	49	20	28.99	-	-	-	T	50208555	G	T	50208555	3	4	335	1	0	0	0	0	1	0	0	0	3863	1014	35	4	994	4	CPT1C	19	50208555	Missense_Mutation	SNP	G	TCGA-AO-A0JJ-01A-11W-A071-09		50208555	8920428	10	36277										
SRXN1	0	genome.wustl.edu	37	chr20	629434	629434	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actggacaagcttggcggggAtggtctctcgctgcagttgc	15	10	1	0			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	20	629434	629434	A	T	SNP	SRXN1	ENST00000381962	human	ensembl	69_37n	-1	known	missense	c.338	p.I113N	1.000	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	-	no_errors	SRXN1	HGNC	ENSG00000172070	16	0	0	3	4	50	-	-	-	T	629434	A	T	629434	3	4	335	1	0	0	0	0	1	0	0	0	15264	333	12	5	79	5	SRXN1	20	629434	Missense_Mutation	SNP	A	TCGA-AO-A0JJ-01A-11W-A071-09		629434	62396086	11	36278										
TAF1	0	genome.wustl.edu	37	chrX	70678132	70678132	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aacacatccctcagtatgtcTcgagatgcctctgtatttca	6	12	4	1			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	X	70678132	70678132	T	A	SNP	TAF1	ENST00000373775	human	ensembl	69_37n	1	known	missense	c.947	p.L316H	0.999	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAF1	HGNC	ENSG00000147133	91	0	0	98	26	20.97	-	-	-	A	70678132	T	A	70678132	3	1	335	1	0	0	0	0	1	0	0	0	15605	1538	54	5	5178	5	TAF1	23	70678132	Missense_Mutation	SNP	T	TCGA-AO-A0JJ-01A-11W-A071-09		70678132	84592428	12	36279										
CCDC27	0	genome.wustl.edu	37	chr1	3670779	3670779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgactgcccccagttcagcaCcagggccacatccatgtccc	8	18	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	3670779	3670779	C	T	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	missense	c.416	p.T139I	0.991	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	35	0	0	33	10	23.26	-	-	-	T	3670779	C	T	3670779	3	4	336	1	0	0	0	0	1	0	0	0	2827	507	18	4	422	4	CCDC27	1	3670779	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09		3670779	245579842	1	36280										
HPDL	0	genome.wustl.edu	37	chr1	45793452	45793452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	agcagggtttgggcttggggGactgaggcttacagccctgc	17	9	0	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	45793452	45793452	G	T	SNP	HPDL	ENST00000334815	human	ensembl	69_37n	1	known	missense	c.632	p.G211V	0.995	pirsf_4OHPhenylPyrv_dOase	pirsf_4OHPhenylPyrv_dOase	-	no_errors	HPDL	HGNC	ENSG00000186603	43	0	0	14	9	39.13	-	-	-	T	45793452	G	T	45793452	3	4	336	1	0	0	0	0	1	0	0	0	7384	1174	41	2	634	2	HPDL	1	45793452	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	42122673	45793452	203457169	2	36281										
SYT11	0	genome.wustl.edu	37	chr1	155838473	155838473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ccttgtcctcagctttgaccGcttctctcgggatgatgtca	9	13	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	155838473	155838473	G	A	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.752	p.R251H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	68	0	0	92	99	51.83	-	-	-	A	155838473	G	A	155838473	3	1	336	1	0	0	0	0	1	0	0	0	15559	1087	38	1	758	1	SYT11	1	155838473	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	110045021	155838473	93412148	3	36282										
IFI16	0	genome.wustl.edu	37	chr1	158984681	158984681	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	aactaataaaaattttcgaaGatataccaacgcttgaagac	5	7	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	158984681	158984681	G	T	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.211	p.D71Y	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	189	0	0	632	94	12.95	-	-	-	T	158984681	G	T	158984681	3	4	336	1	0	0	0	0	1	0	0	0	7565	942	33	2	213	2	IFI16	1	158984681	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	3146208	158984681	90265940	4	36283										
DUSP27	0	genome.wustl.edu	37	chr1	167088559	167088559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgaatgctgcgcatggcaccGgcgtttacactggccccgaa	12	13	0	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	167088559	167088559	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.511	p.G171S	0.992	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	34	0	0	74	12	13.79	-	-	-	A	167088559	G	A	167088559	3	1	336	1	0	0	0	0	1	0	0	0	4859	1116	39	1	525	1	DUSP27	1	167088559	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	8103878	167088559	82162062	5	36284										
PIGR	0	genome.wustl.edu	37	chr1	207107989	207107989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgttattccacttgcaccagTatttctcgtacgaggagaat	8	9	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	1	207107989	207107989	T	C	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.1481	p.Y494C	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	98	0	0	65	19	22.62	-	-	-	C	207107989	T	C	207107989	3	2	336	1	0	0	0	0	1	0	0	0	11971	1638	57	5	837	5	PIGR	1	207107989	Missense_Mutation	SNP	T	TCGA-AO-A0JL-01A-11W-A071-09	40019430	207107989	42142632	6	36285										
NCKAP5	0	genome.wustl.edu	37	chr2	133541246	133541246	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gtttggcgaggagaggttttGgggacacctctcttcggaga	16	7	1	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	2	133541246	133541246	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.3138	p.P1046	0.029	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	73	0	0	102	30	22.73	-	-	-	A	133541246	G	A	133541246	2	1	336	1	0	0	0	0	0	0	0	1	10295	1335	47	4		4	NCKAP5	2	133541246	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		133541246	109658127	7	36286										
RIF1	0	genome.wustl.edu	37	chr2	152273161	152273161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gtactagagcactttgggtgAtatctaagcagacatttccc	9	9	1	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	2	152273161	152273161	A	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.367	p.I123V	1.000	superfamily_ARM-type_fold	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	298	0	0	365	46	11.19	-	-	-	G	152273161	A	G	152273161	3	3	336	1	0	0	0	0	1	0	0	0	13443	333	12	5	381	5	RIF1	2	152273161	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09	18731915	152273161	90926212	8	36287										
ANKRD28	0	genome.wustl.edu	37	chr3	15755061	15755061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgtcagcaccacttgtaataAgagtgttgatcagcagctca	9	9	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	15755061	15755061	A	G	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1172	p.L391P	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	133	0	0	45	184	80.35	-	-	-	G	15755061	A	G	15755061	3	3	336	1	0	0	0	0	1	0	0	0	656	72	3	5	2164	5	ANKRD28	3	15755061	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09		15755061	182267369	9	36288										
ZNF502	0	genome.wustl.edu	37	chr3	44762851	44762851	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gagaactcatactggagagaGaccctacacatgtgaggaat	11	8	1	4			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	44762851	44762851	G	C	SNP	ZNF502	ENST00000296091	human	ensembl	69_37n	1	known	missense	c.542	p.R181T	0.747	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653	218	0	0	286	49	14.63	-	-	-	C	44762851	G	C	44762851	3	2	336	1	0	0	0	0	1	0	0	0	18046	942	33	2	548	2	ZNF502	3	44762851	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	29007790	44762851	153259579	10	36289										
CD80	0	genome.wustl.edu	37	chr3	119263560	119263560	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	atggtccggttcttgtactcGggccatatattcatgtcccc	9	12	2	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	119263560	119263560	G	A	SNP	CD80	ENST00000264246	human	ensembl	69_37n	-1	known	silent	c.255	p.P85	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD80	HGNC	ENSG00000121594	135	0	0	135	27	16.67	-	-	-	A	119263560	G	A	119263560	2	1	336	1	0	0	0	0	0	0	0	1	3067	1103	39	1		1	CD80	3	119263560	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	74500709	119263560	78758870	11	36290										
TM4SF1	0	genome.wustl.edu	37	chr3	149095219	149095219	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	agcggctgaggtggttttcgGaggcatactttgtttcccca	13	9	0	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	149095219	149095219	G	C	SNP	TM4SF1	ENST00000305366	human	ensembl	69_37n	-1	known	missense	c.116	p.S39C	0.001	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908	60	0	0	36	7	16.28	-	-	-	C	149095219	G	C	149095219	3	2	336	1	0	0	0	0	1	0	0	0	16061	1174	41	2	512	2	TM4SF1	3	149095219	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	29831659	149095219	48927211	12	36291										
NMD3	0	genome.wustl.edu	37	chr3	160952568	160952568	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gtggtggattatgttgttcaGtcccaaatgtgtggagattg	14	4	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	160952568	160952568	G	T	SNP	NMD3	ENST00000351193	human	ensembl	69_37n	1	known	missense	c.411	p.Q137H	1.000	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251	202	0	0	269	107	28.46	-	-	-	T	160952568	G	T	160952568	3	4	336	1	0	0	0	0	1	0	0	0	10560	1020	36	4	429	4	NMD3	3	160952568	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	11857349	160952568	37069862	13	36292										
SI	0	genome.wustl.edu	37	chr3	164785127	164785127	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	attgtaaaataatacacttaCaaagttttaccgttgctttt	4	6	0	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	164785127	164785127	C	T	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	splice_site	c.635+1	e5+1	1.000	-	-	-	no_errors	SI	HGNC	ENSG00000090402	74	0	0	100	17	14.53	-	-	-	T	164785127	C	T	164785127	5	4	336	1	0	0	0	0	0	0	1	0	14386	492	17	4	5019	4	SI	3	164785127	Splice_Site	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	3832559	164785127	33237303	14	36293										
FXR1	0	genome.wustl.edu	37	chr3	180686028	180686031	+	Frame_Shift_Del	DEL	CCTC	CCTC	-													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tggaccacgtggtggcaaatCctccatcagttctggtagtc							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	CCTC	CCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	3	180686028	180686031	CCTC	-	DEL	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	frame_shift_del	c.1388_1391	p.I465fs	1.000:0.998:1.000:1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	73	0	0	55	29	34.52	-	-	-	-	180686031	CCTC	-	180686028	7	5	336	1	0	1	0	1	0	0	0	0	6164	855	30	0	1442	0	FXR1	3	180686028	Frame_Shift_Del	DEL	CCTC	TCGA-AO-A0JL-01A-11W-A071-09	15900901	180686028	17336402	15	36294										
NIPAL1	0	genome.wustl.edu	37	chr4	48027169	48027169	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	acagctgctggcttctcctgTgctctacacggacctgaatt	9	13	2	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	4	48027169	48027169	T	A	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	1	known	missense	c.131	p.V44E	0.000	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	124	0	0	161	39	19.5	-	-	-	A	48027169	T	A	48027169	3	1	336	1	0	0	0	0	1	0	0	0	10496	1696	59	5	137	5	NIPAL1	4	48027169	Missense_Mutation	SNP	T	TCGA-AO-A0JL-01A-11W-A071-09		48027169	143127107	16	36295										
WDFY3	0	genome.wustl.edu	37	chr4	85648059	85648059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tcaggctgtttacttgggatCtcagactgaaaacagggtat	11	7	2	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	4	85648059	85648059	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.7227	p.E2409	0.997	superfamily_Cyclin-like	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	114	0	0	211	27	11.34	-	-	-	T	85648059	C	T	85648059	2	4	336	1	0	0	0	0	0	0	0	1	17367	912	32	2		2	WDFY3	4	85648059	Silent	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	37620890	85648059	105506217	17	36296										
EMB	0	genome.wustl.edu	37	chr5	49695122	49695122	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgtattcactggcccagagaCtcctgagttaaataaagcat	8	9	1	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	5	49695122	49695122	C	A	SNP	EMB	ENST00000303221	human	ensembl	69_37n	-1	known	missense	c.969	p.E323D	0.034	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	EMB	HGNC	ENSG00000170571	106	0	0	115	33	22.3	-	-	-	A	49695122	C	A	49695122	3	1	336	1	0	0	0	0	1	0	0	0	5122	564	20	4	18	4	EMB	5	49695122	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09		49695122	131220138	18	36297										
CAGE1	0	genome.wustl.edu	37	chr6	7373460	7373460	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgatttgctgctgaagttttAtattcttcgttctttcattt	6	6	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	6	7373460	7373460	A	G	SNP	CAGE1	ENST00000338150	human	ensembl	69_37n	-1	known	missense	c.1592	p.I531T	0.000	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304	33	0	0	72	21	22.58	-	-	-	G	7373460	A	G	7373460	3	3	336	1	0	0	0	0	1	0	0	0	2597	449	16	5	1073	5	CAGE1	6	7373460	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09		7373460	163741607	19	36298										
GRM1	0	genome.wustl.edu	37	chr6	146755726	146755726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	aagaagacgaactggaagagGaggaggaggacctgcaggcg	18	6	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	6	146755726	146755726	G	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.3379	p.E1127K	0.995	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	63	0	0	61	8	11.59	-	-	-	A	146755726	G	A	146755726	3	1	336	1	0	0	0	0	1	0	0	0	6847	1175	41	2	3474	2	GRM1	6	146755726	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	139382266	146755726	24359341	20	36299										
ARID1B	0	genome.wustl.edu	37	chr6	157528561	157528561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tcagtatccaggacaataatGtggacctgatcttggccact	9	10	2	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	6	157528561	157528561	G	T	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.6406	p.V2136L	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	241	0	0	176	41	18.89	-	-	-	T	157528561	G	T	157528561	3	4	336	1	0	0	0	0	1	0	0	0	916	1377	48	4	6364	4	ARID1B	6	157528561	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	10772835	157528561	13586506	21	36300										
HGF	0	genome.wustl.edu	37	chr7	81346551	81346551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tccctaactgtacttacaacGagaaatagggcaataatccc	6	11	0	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	7	81346551	81346551	G	A	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.1402	p.R468C	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	157	0	0	191	64	25.1	-	-	-	A	81346551	G	A	81346551	3	1	336	1	0	0	0	0	1	0	0	0	7136	1058	37	1	816	1	HGF	7	81346551	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		81346551	77792112	22	36301										
PARP12	0	genome.wustl.edu	37	chr7	139724642	139724642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgggtctgcgtgtcggatttGctgtagtggtgggaatatgc	17	5	1	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	7	139724642	139724642	G	T	SNP	PARP12	ENST00000263549	human	ensembl	69_37n	-1	known	missense	c.1824	p.S608R	0.607	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378	45	0	0	41	9	18	-	-	-	T	139724642	G	T	139724642	3	4	336	1	0	0	0	0	1	0	0	0	11530	1310	46	4	285	4	PARP12	7	139724642	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	58378091	139724642	19414021	23	36302										
JHDM1D	0	genome.wustl.edu	37	chr7	139796372	139796372	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	taccacattccactggtttaTcatagcgatacaactgccta	5	12	1	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	7	139796372	139796372	T	G	SNP	JHDM1D	ENST00000397560	human	ensembl	69_37n	-1	known	missense	c.2357	p.D786A	0.244	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459	99	0	0	161	29	15.26	-	-	-	G	139796372	T	G	139796372	3	3	336	1	0	0	0	0	1	0	0	0	8002	1435	50	5	484	5	JHDM1D	7	139796372	Missense_Mutation	SNP	T	TCGA-AO-A0JL-01A-11W-A071-09	71730	139796372	19342291	24	36303										
ZNF658	0	genome.wustl.edu	37	chr9	40774730	40774730	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	aagatttctcttcagcatgaGctttctcatgcttaatatca	5	9	4	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	9	40774730	40774730	G	C	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.545	p.A182G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	73	0	0	49	30	37.97	-	-	-	C	40774730	G	C	40774730	3	2	336	1	0	0	0	0	1	0	0	0	18165	971	34	4	2638	4	ZNF658	9	40774730	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		40774730	100438701	25	36304										
ENTPD1	0	genome.wustl.edu	37	chr10	97626096	97626096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	cagtggccatcataggcttgCttatctttcacaagccttca	7	12	4	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	10	97626096	97626096	C	T	SNP	ENTPD1	ENST00000371207	human	ensembl	69_37n	1	known	missense	c.1525	p.L509F	0.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD1	HGNC	ENSG00000138185	85	0	0	43	20	31.75	-	-	-	T	97626096	C	T	97626096	3	4	336	1	0	0	0	0	1	0	0	0	5175	797	28	4	1624	4	ENTPD1	10	97626096	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09		97626096	37908651	26	36305										
FAM196A	0	genome.wustl.edu	37	chr10	128973678	128973678	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctggttccccagccccggcgGggtgtgagtctgcgacggct	16	14	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	10	128973678	128973678	G	C	SNP	FAM196A	ENST00000522781	human	ensembl	69_37n	-1	known	missense	c.982	p.P328A	0.002	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916	52	0	0	24	8	25	-	-	-	C	128973678	G	C	128973678	3	2	336	1	0	0	0	0	1	0	0	0	5570	1232	43	4	469	4	FAM196A	10	128973678	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	31347582	128973678	6561069	27	36306										
OR5I1	0	genome.wustl.edu	37	chr11	55703345	55703345	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	agggaggtcacagaaaaaatGattaataacatttttgtcac	8	5	2	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	11	55703345	55703345	G	A	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.532	p.H178Y	0.981	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	110	0	0	144	39	21.2	-	-	-	A	55703345	G	A	55703345	3	1	336	1	0	0	0	0	1	0	0	0	11237	1290	45	2	415	2	OR5I1	11	55703345	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		55703345	79303171	28	36307										
TIGD3	0	genome.wustl.edu	37	chr11	65124020	65124021	+	Frame_Shift_Del	DEL	GG	GG	-													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	atcccctggttagagtggttGgcacagtttgaccgggacat							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	11	65124020	65124021	GG	-	DEL	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	frame_shift_del	c.741_742	p.L247fs	1.000:1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	29	0	0	21	13	38.24	-	-	-	-	65124021	GG	-	65124020	7	5	336	1	0	1	0	1	0	0	0	0	15992	1339	47	0	743	0	TIGD3	11	65124020	Frame_Shift_Del	DEL	GG	TCGA-AO-A0JL-01A-11W-A071-09	9420675	65124020	69882496	29	36308										
DPP3	0	genome.wustl.edu	37	chr11	66259056	66259056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	cgaggcccacaagaggggctCccgcttctggatccaggaca	13	14	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	11	66259056	66259056	C	T	SNP	DPP3	ENST00000360510	human	ensembl	69_37n	1	known	missense	c.890	p.S297F	1.000	pirsf_Pept_49_dipeptidyl-pept-3_euk	pirsf_Pept_49_dipeptidyl-pept-3_euk	-	no_errors	DPP3	HGNC	ENSG00000254986	35	0	0	18	7	28	-	-	-	T	66259056	C	T	66259056	3	4	336	1	0	0	0	0	1	0	0	0	4763	855	30	2	916	2	DPP3	11	66259056	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	1135036	66259056	68747460	30	36309										
BTG4	0	genome.wustl.edu	37	chr11	111367981	111367981	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	actttaggaatgacacgaggTtccttgctacaactttcttc	7	10	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	11	111367981	111367981	T	C	SNP	BTG4	ENST00000356018	human	ensembl	69_37n	-1	known	silent	c.465	p.E155	0.336	NULL	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG4	HGNC	ENSG00000137707	281	0	0	230	147	38.89	-	-	-	C	111367981	T	C	111367981	2	2	336	1	0	0	0	0	0	0	0	1	1565	1722	60	5		5	BTG4	11	111367981	Silent	SNP	T	TCGA-AO-A0JL-01A-11W-A071-09	45108925	111367981	23638535	31	36310										
TARBP2	0	genome.wustl.edu	37	chr12	53898183	53898184	+	Frame_Shift_Ins	INS	-	-	C													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgtgccttttccttcaggagINScccccccatggaactgcagc							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	12	53898183	53898184	-	C	INS	TARBP2	ENST00000266987	human	ensembl	69_37n	1	known	frame_shift_ins	c.425_426	p.M145fs	0.999:0.994	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	TARBP2	HGNC	ENSG00000139546	72	0	0	32	4	11.11	-	-	-	C	53898184	-	C	53898183	7	5	336	1	0	1	1	0	0	0	0	0	15648	971	34	0	443	0	TARBP2	12	53898183	Frame_Shift_Ins	INS	-	TCGA-AO-A0JL-01A-11W-A071-09		53898183	79953712	32	36311										
PDE1B	0	genome.wustl.edu	37	chr12	54967460	54967460	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctgccatttccagcaagtgaAgaccatgaagacagccttgc	9	12	0	4			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	12	54967460	54967460	A	G	SNP	PDE1B	ENST00000243052	human	ensembl	69_37n	1	known	missense	c.1031	p.K344R	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	123	0	0	56	22	28.21	-	-	-	G	54967460	A	G	54967460	3	3	336	1	0	0	0	0	1	0	0	0	11707	72	3	5	1122	5	PDE1B	12	54967460	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09	1069277	54967460	78884435	33	36312										
INHBC	0	genome.wustl.edu	37	chr12	57843320	57843320	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	aagctcaagctgcctgcagcCaggggcacctgaccctggag	13	14	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	12	57843320	57843320	C	T	SNP	INHBC	ENST00000309668	human	ensembl	69_37n	1	known	nonsense	c.574	p.Q192*	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC	-	no_errors	INHBC	HGNC	ENSG00000175189	130	0	0	119	27	18.49	-	-	-	T	57843320	C	T	57843320	4	4	336	1	0	0	0	0	0	1	0	0	7797	595	21	4	580	4	INHBC	12	57843320	Nonsense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	2875860	57843320	76008575	34	36313										
NAV3	0	genome.wustl.edu	37	chr12	78570996	78570996	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	catcacattctgacattgaaGagcttactgattcatccctt	5	11	3	4			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	12	78570996	78570996	G	A	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.5200	p.E1734K	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	196	0	0	121	80	39.8	-	-	-	A	78570996	G	A	78570996	3	1	336	1	0	0	0	0	1	0	0	0	10257	943	33	2	5306	2	NAV3	12	78570996	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	20727676	78570996	55280899	35	36314										
RBM23	0	genome.wustl.edu	37	chr14	23374660	23374660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gactcagattatcaactggcTccctgaagagtgaaatgtgt	10	8	2	4			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	14	23374660	23374660	T	C	SNP	RBM23	ENST00000359890	human	ensembl	69_37n	-1	known	missense	c.458	p.E153G	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM23	HGNC	ENSG00000100461	129	0	0	52	40	43.48	-	-	-	C	23374660	T	C	23374660	3	2	336	1	0	0	0	0	1	0	0	0	13206	1551	54	5	893	5	RBM23	14	23374660	Missense_Mutation	SNP	T	TCGA-AO-A0JL-01A-11W-A071-09		23374660	83974880	36	36315										
ZFYVE1	0	genome.wustl.edu	37	chr14	73441506	73441507	+	Frame_Shift_Ins	INS	-	-	A													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctaactggacgttcctggctINStcgtagcagttgtcacagac							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	14	73441506	73441507	-	A	INS	ZFYVE1	ENST00000553891	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1968_1967	p.E656fs	0.083:1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Growth_fac_rcpt,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861	51	0	0	26	3	10.34	-	-	-	A	73441507	-	A	73441506	7	5	336	1	0	1	1	0	0	0	0	0	17759	1606	56	0	377	0	ZFYVE1	14	73441506	Frame_Shift_Ins	INS	-	TCGA-AO-A0JL-01A-11W-A071-09	50066846	73441506	33908034	37	36316										
TRIP11	0	genome.wustl.edu	37	chr14	92472173	92472173	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	cctctatctctcctttttccAtttttagagtctccacaata	2	13	3	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	14	92472173	92472173	A	G	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.2147	p.M716T	0.610	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	253	0	0	269	65	19.46	-	-	-	G	92472173	A	G	92472173	3	3	336	1	0	0	0	0	1	0	0	0	16651	217	8	5	3836	5	TRIP11	14	92472173	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09	19030667	92472173	14877367	38	36317										
MRPS11	0	genome.wustl.edu	37	chr15	89011148	89011148	+	Frame_Shift_Del	DEL	G	G	-													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tttcttcccagcagggtcgtGgccagaacgccggccgggac							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	15	89011148	89011148	G	-	DEL	MRPS11	ENST00000325844	human	ensembl	69_37n	1	known	frame_shift_del	c.75	p.A26fs	0.001	NULL	pfam_Ribosomal_S11	-	no_errors	MRPS11	HGNC	ENSG00000181991	9	0	0	7	6	46.15	-	-	-	-	89011148	G	-	89011148	7	5	336	1	0	1	0	1	0	0	0	0	9894	1335	47	0	81	0	MRPS11	15	89011148	Frame_Shift_Del	DEL	G	TCGA-AO-A0JL-01A-11W-A071-09		89011148	13520244	39	36318										
IFT140	0	genome.wustl.edu	37	chr16	1633329	1633329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	acccacctgcactccgtatcGcggctccagaaagctcgaag	9	16	0	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	16	1633329	1633329	G	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.1418	p.A473V	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	64	0	0	77	10	11.49	-	-	-	A	1633329	G	A	1633329	3	1	336	1	0	0	0	0	1	0	0	0	7610	1087	38	1	3050	1	IFT140	16	1633329	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		1633329	88721424	40	36319										
CIITA	0	genome.wustl.edu	37	chr16	10995394	10995394	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tcccagaggagcttccggcaGacctgaagcactggaagcca	12	13	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	16	10995394	10995394	G	C	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	missense	c.460	p.D154H	0.078	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	27	0	0	196	62	24.03	-	-	-	C	10995394	G	C	10995394	3	2	336	1	0	0	0	0	1	0	0	0	3457	942	33	2	482	2	CIITA	16	10995394	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	9362065	10995394	79359359	41	36320										
HS3ST2	0	genome.wustl.edu	37	chr16	22926832	22926832	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctccgagaattttatagaccGtataatatcaaattttatga	5	6	1	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	16	22926832	22926832	G	A	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	silent	c.1053	p.P351	0.995	NULL	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	355	0	0	491	115	18.98	-	-	-	A	22926832	G	A	22926832	2	1	336	1	0	0	0	0	0	0	0	1	7415	1132	40	1		1	HS3ST2	16	22926832	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	11931438	22926832	67427921	42	36321										
SEZ6L2	0	genome.wustl.edu	37	chr16	29899946	29899946	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tctccctgcagctggtagccCgaatcacagtgaaaggtggc	12	12	2	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	16	29899946	29899946	C	G	SNP	SEZ6L2	ENST00000308713	human	ensembl	69_37n	-1	known	silent	c.954	p.S318	0.685	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938	29	0	0	30	10	25	-	-	-	G	29899946	C	G	29899946	2	3	336	1	0	0	0	0	0	0	0	1	14232	639	23	3		3	SEZ6L2	16	29899946	Silent	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	6973114	29899946	60454807	43	36322										
CDH11	0	genome.wustl.edu	37	chr16	64984859	64984859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gctgatcactatgggcagaaGgtacaagtcctgcttctgcc	11	11	2	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	16	64984859	64984859	G	A	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.1705	p.L569F	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	32	0	0	40	11	21.57	-	-	-	A	64984859	G	A	64984859	3	1	336	1	0	0	0	0	1	0	0	0	3126	1000	35	4	693	4	CDH11	16	64984859	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	35084913	64984859	25369894	44	36323										
TP53	0	genome.wustl.edu	37	chr17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ttgtcctgcttgcttacctcGcttagtgctccctgggggca	11	13	0	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	75	0	0	16	90	84.11	-	-	-	A	7577022	G	A	7577022	4	1	336	1	0	0	0	0	0	1	0	0	16477	1095	38	1	370	1	TP53	17	7577022	Nonsense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		7577022	73618188	45	36324										
ABCA10	0	genome.wustl.edu	37	chr17	67181631	67181631	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ttctcacctgtattattaacGattaacaggctggtaagagg	9	7	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	17	67181631	67181631	G	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	silent	c.2484	p.I828	0.337	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	146	1	0.68	124	89	41.78	-	-	-	A	67181631	G	A	67181631	2	1	336	1	0	0	0	0	0	0	0	1	29	1048	37	1		1	ABCA10	17	67181631	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	59604609	67181631	14013579	46	36325										
CELF4	0	genome.wustl.edu	37	chr18	34850769	34850769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	cattggcgaacacagcttccGcagcaggttgcccattggcc	11	14	0	0			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	18	34850769	34850769	G	A	SNP	CELF4	ENST00000361795	human	ensembl	69_37n	-1	known	missense	c.1061	p.A354V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489	38	0	0	17	8	32	-	-	-	A	34850769	G	A	34850769	3	1	336	1	0	0	0	0	1	0	0	0	3247	1087	38	1	419	1	CELF4	18	34850769	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		34850769	43226479	47	36326										
POLI	0	genome.wustl.edu	37	chr18	51797757	51797757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgatcaagtgttgcccacacCaaatgcttcatccagagtca	7	12	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	18	51797757	51797757	C	T	SNP	POLI	ENST00000579534	human	ensembl	69_37n	1	known	missense	c.143	p.P48L	0.007	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751	24	0	0	25	12	32.43	-	-	-	T	51797757	C	T	51797757	3	4	336	1	0	0	0	0	1	0	0	0	12277	594	21	4	149	4	POLI	18	51797757	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	16946988	51797757	26279491	48	36327										
RTTN	0	genome.wustl.edu	37	chr18	67759382	67759382	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	acccataatggaatcaaccaAgccaatccttgttgagtagg	8	10	1	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	18	67759382	67759382	A	G	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	silent	c.4107	p.A1369	0.221	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	96	0	0	126	46	26.74	-	-	-	G	67759382	A	G	67759382	2	3	336	1	0	0	0	0	0	0	0	1	13823	59	3	5		5	RTTN	18	67759382	Silent	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09	15961625	67759382	10317866	49	36328										
HMHA1	0	genome.wustl.edu	37	chr19	1079999	1079999	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tgcacttccagatgctgtgtGagagcagcaagctgtatgac	12	9	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	19	1079999	1079999	G	C	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	missense	c.1585	p.E529Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	18	0	0	8	4	33.33	-	-	-	C	1079999	G	C	1079999	3	2	336	1	0	0	0	0	1	0	0	0	7291	1291	45	2	1635	2	HMHA1	19	1079999	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		1079999	58048984	50	36329										
ZNF254	0	genome.wustl.edu	37	chr19	24289416	24289416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gaaagagccctggaatatgaAgcgacatgagatggtggatg	15	5	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	19	24289416	24289416	A	G	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.224	p.K75R	0.014	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	168	0	0	274	86	23.89	-	-	-	G	24289416	A	G	24289416	3	3	336	1	0	0	0	0	1	0	0	0	17894	72	3	5	234	5	ZNF254	19	24289416	Missense_Mutation	SNP	A	TCGA-AO-A0JL-01A-11W-A071-09	23209417	24289416	34839567	51	36330										
MAP4K1	0	genome.wustl.edu	37	chr19	39088168	39088168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	taatgtgagcgatggggtttCctgctctggtctctttccgt	12	9	2	1			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	19	39088168	39088168	C	T	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	missense	c.1736	p.G579E	0.162	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	101	0	0	66	27	28.72	-	-	-	T	39088168	C	T	39088168	3	4	336	1	0	0	0	0	1	0	0	0	9330	855	30	2	867	2	MAP4K1	19	39088168	Missense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	14798752	39088168	20040815	52	36331										
ZNF419	0	genome.wustl.edu	37	chr19	58004585	58004585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	cagaaatatttacttgttcaGcaccagagactacatgctgg	8	9	1	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	19	58004585	58004585	G	A	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	1	known	silent	c.663	p.Q221	0.087	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	120	1	0.83	90	50	35.71	-	-	-	A	58004585	G	A	58004585	2	1	336	1	0	0	0	0	0	0	0	1	17992	962	34	4		4	ZNF419	19	58004585	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	18916417	58004585	1124398	53	36332										
ZNF550	0	genome.wustl.edu	37	chr19	58058369	58058369	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	atggaccctttggtgctgcaGaaggtgtgacctgcgtttga	14	8	0	3			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	19	58058369	58058369	G	A	SNP	ZNF550	ENST00000344222	human	ensembl	69_37n	-1	known	silent	c.1243	p.L415	0.023	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC003682.1	Clone_based_ensembl_gene	ENSG00000251369	56	0	0	40	7	14.89	-	-	-	A	58058369	G	A	58058369	2	1	336	1	0	0	0	0	0	0	0	1	18078	933	33	2		2	ZNF550	19	58058369	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	53784	58058369	1070614	54	36333										
ZNF133	0	genome.wustl.edu	37	chr20	18296782	18296783	+	Frame_Shift_Ins	INS	-	-	A													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	caaccctcatctctcacaggINScggacacacactggggagaa							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	20	18296782	18296783	-	A	INS	ZNF133	ENST00000396026	human	ensembl	69_37n	1	known	frame_shift_ins	c.1296_1297	p.R432fs	1.000:0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	137	0	0	211	48	18.53	-	-	-	A	18296783	-	A	18296782	7	5	336	1	0	1	1	0	0	0	0	0	17819	1194	42	0	1294	0	ZNF133	20	18296782	Frame_Shift_Ins	INS	-	TCGA-AO-A0JL-01A-11W-A071-09		18296782	44728738	55	36334										
CHD6	0	genome.wustl.edu	37	chr20	40081463	40081463	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	tcattgaggcgcctggatctCgtgggcctttcgtctgagtc	13	11	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	20	40081463	40081463	C	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.3240	p.T1080	0.052	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	128	0	0	176	23	11.56	-	-	-	T	40081463	C	T	40081463	2	4	336	1	0	0	0	0	0	0	0	1	3358	871	31	1		1	CHD6	20	40081463	Silent	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	21784681	40081463	22944057	56	36335										
ICOSLG	0	genome.wustl.edu	37	chr21	45655412	45655413	+	Frame_Shift_Ins	INS	-	-	G													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctcatcctgggaggggctgtINSggggggcgctgacgacgggc							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	21	45655412	45655413	-	G	INS	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	frame_shift_ins	c.440_439	p.H147fs	0.000:0.000	pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	14	0	0	7	2	22.22	-	-	-	G	45655413	-	G	45655412	7	5	336	1	0	1	1	0	0	0	0	0	7541	1696	59	0	484	0	ICOSLG	21	45655412	Frame_Shift_Ins	INS	-	TCGA-AO-A0JL-01A-11W-A071-09		45655412	2474483	57	36336										
BRD1	0	genome.wustl.edu	37	chr22	50192208	50192208	+	Nonsense_Mutation	SNP	C	C	A													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	agcgccgcaaacacccacctCcttcagactcacgggctgcg							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	22	50192208	50192208	C	A	SNP	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	nonsense	c.1783	p.E595*	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	26	0	0	38	7	15.56	-	-	-	A	50192208	C	A	50192208	4	1	336	1	0	0	0	0	0	1	0	0	1509	864	30	2	1429	2	BRD1	22	50192208	Nonsense_Mutation	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09		50192208	1112358	58	36337	292	2								
BRD1	0	genome.wustl.edu	37	chr22	50192209	50192209	+	Silent	SNP	C	C	T													0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	gcgccgcaaacacccacctcCttcagactcacgggctgcgc							TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	22	50192209	50192209	C	T	SNP	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	silent	c.1782	p.K594	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	26	0	0	37	7	15.91	-	-	-	T	50192209	C	T	50192209	2	4	336	1	0	0	0	0	0	0	0	1	1509	680	24	4		4	BRD1	22	50192209	Silent	SNP	C	TCGA-AO-A0JL-01A-11W-A071-09	1	50192209	1112357	59	36338	292	2								
KLF8	0	genome.wustl.edu	37	chrX	56291989	56291989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	ctcctctcagagcactggtaGccagcagatcttacatgtca	8	13	3	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	X	56291989	56291989	G	T	SNP	KLF8	ENST00000468660	human	ensembl	69_37n	1	known	missense	c.458	p.S153I	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349	147	0	0	97	27	21.77	-	-	-	T	56291989	G	T	56291989	3	4	336	1	0	0	0	0	1	0	0	0	8405	971	34	4	468	4	KLF8	23	56291989	Missense_Mutation	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09		56291989	98978571	60	36339										
IDS	0	genome.wustl.edu	37	chrX	148571918	148571918	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.116666666666667	7	0.490233854361729	1.46350806451613	2.86728110599078	1.07045161290323	1	1	0	aaagcactcaagaggcggccGacctgtgtatccaaatatga	10	10	1	2			TCGA-AO-A0JL-01A-11W-A071-09	TCGA-AO-A0JL-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56a22648-be92-402c-a225-bcaa44a7e612	efe1ab84-6be7-4543-b692-f12470b5ddea	X	148571918	148571918	G	T	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.933	p.V311	0.255	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	104	0	0	73	16	17.98	-	-	-	T	148571918	G	T	148571918	2	4	336	1	0	0	0	0	0	0	0	1	7557	1045	37	3		3	IDS	23	148571918	Silent	SNP	G	TCGA-AO-A0JL-01A-11W-A071-09	92279929	148571918	6698642	61	36340										
DOCK7	0	genome.wustl.edu	37	chr1	62979249	62979249	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	ttgatttcttaaaggtcaagCtattcattcgttcaaacact	5	8	4	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	62979249	62979249	C	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4148	p.S1383I	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	277	0	0	214	47	18.01	-	-	-	A	62979249	C	A	62979249	3	1	337	1	0	0	0	0	1	0	0	0	4727	797	28	4	2346	4	DOCK7	1	62979249	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		62979249	186271372	1	36341										
MTF2	0	genome.wustl.edu	37	chr1	93594865	93594865	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	gggaaagaaataaagaagaaGaagcatttgtttgggttgcg	14	2	0	4			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	93594865	93594865	G	C	SNP	MTF2	ENST00000370298	human	ensembl	69_37n	1	known	missense	c.1020	p.K340N	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	162	0	0	140	34	19.54	-	-	-	C	93594865	G	C	93594865	3	2	337	1	0	0	0	0	1	0	0	0	9995	933	33	2	1062	2	MTF2	1	93594865	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09	30615616	93594865	155655756	2	36342										
MDM4	0	genome.wustl.edu	37	chr1	204513770	204513770	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	aaagttgaagctgctgatacTgaacaaacaagtgaagaagt	10	5	0	5			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	204513770	204513770	T	G	SNP	MDM4	ENST00000367182	human	ensembl	69_37n	1	known	silent	c.780	p.T260	0.788	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625	93	0	0	75	18	19.35	-	-	-	G	204513770	T	G	204513770	2	3	337	1	0	0	0	0	0	0	0	1	9485	1567	55	5		5	MDM4	1	204513770	Silent	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09	110918905	204513770	44736851	3	36343										
GTF3C3	0	genome.wustl.edu	37	chr2	197662581	197662581	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tcctgatgatgatggaacttCagagtcatcgggattttctt	10	7	3	4			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	197662581	197662581	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	0.995	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041	68	0	0	34	14	29.17	-	-	-	T	197662581	C	T	197662581	3	4	337	1	0	0	0	0	1	0	0	0	6925	835	29	2	2574	2	GTF3C3	2	197662581	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		197662581	45536792	4	36344										
WDR69	0	genome.wustl.edu	37	chr2	228769656	228769656	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tttttctagggacattctgcCgaaatcatctccttgtcatt	6	10	5	0			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	228769656	228769656	C	T	SNP	WDR69	ENST00000309931	human	ensembl	69_37n	1	known	silent	c.660	p.A220	0.886	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR69	HGNC	ENSG00000123977	265	0	0	129	33	20.25	-	-	-	T	228769656	C	T	228769656	2	4	337	1	0	0	0	0	0	0	0	1	17416	639	23	1		1	WDR69	2	228769656	Silent	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09	31107075	228769656	14429717	5	36345										
C3orf20	0	genome.wustl.edu	37	chr3	14725873	14725873	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	gggagaagtggctacagcagCggacagttgtggaaaggtgg	19	5	0	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	14725873	14725873	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	106	1	0.93	72	8	10	-	-	-	T	14725873	C	T	14725873	2	4	337	1	0	0	0	0	0	0	0	1	2233	767	27	1		1	C3orf20	3	14725873	Silent	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		14725873	183296557	6	36346										
GBE1	0	genome.wustl.edu	37	chr3	81698093	81698093	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	gggaagaaattcccacatgaGattcataaattcttagactc	7	8	2	3			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	81698093	81698093	G	C	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.605	p.S202C	1.000	superfamily_Glycoside_hydrolase_SF	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	51	0	0	40	9	18.37	-	-	-	C	81698093	G	C	81698093	3	2	337	1	0	0	0	0	1	0	0	0	6320	942	33	2	1551	2	GBE1	3	81698093	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09	66972220	81698093	116324337	7	36347										
GABRR3	0	genome.wustl.edu	37	chr3	97726675	97726675	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	atgaagaactgagaaagggaCatatgttcttcagtatttaa	9	4	2	3			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	97726675	97726675	C	G	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	missense	c.687	p.M229I	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	71	0	0	36	23	38.33	-	-	-	G	97726675	C	G	97726675	3	3	337	1	0	0	0	0	1	0	0	0	6227	478	17	4	731	4	GABRR3	3	97726675	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09	16028582	97726675	100295755	8	36348										
TFAP2A	0	genome.wustl.edu	37	chr6	10398921	10398921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	cctgagccagcaggtcggtgAactctttgcatatctgtctg	11	11	3	2			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	10398921	10398921	A	C	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.1043	p.F348C	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	116	0	0	131	20	13.25	-	-	-	C	10398921	A	C	10398921	3	2	337	1	0	0	0	0	1	0	0	0	15882	246	9	5	274	5	TFAP2A	6	10398921	Missense_Mutation	SNP	A	TCGA-AO-A0JM-01A-21W-A071-09		10398921	160716146	9	36349										
BRPF3	0	genome.wustl.edu	37	chr6	36178148	36178148	+	Silent	SNP	T	T	A													0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tataatgctaaagacacaatTttccaccgagcagctgtccg							TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	36178148	36178148	T	A	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	silent	c.2022	p.I674	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	87	0	0	26	20	43.48	-	-	-	A	36178148	T	A	36178148	2	1	337	1	0	0	0	0	0	0	0	1	1529	1829	64	5		5	BRPF3	6	36178148	Silent	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09	25779227	36178148	134936919	10	36350	293	2								
BRPF3	0	genome.wustl.edu	37	chr6	36178149	36178149	+	Missense_Mutation	SNP	T	T	G													0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	ataatgctaaagacacaattTtccaccgagcagctgtccgc							TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	36178149	36178149	T	G	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.2023	p.F675V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	89	0	0	26	19	42.22	-	-	-	G	36178149	T	G	36178149	3	3	337	1	0	0	0	0	1	0	0	0	1529	1841	64	5	2041	5	BRPF3	6	36178149	Missense_Mutation	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09	1	36178149	134936918	11	36351	293	2								
PPP1R9A	0	genome.wustl.edu	37	chr7	94915619	94915619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	ccagggctctctcagtccttAgcactgtcatcagatgaggt	10	12	4	2			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	94915619	94915619	A	C	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	missense	c.3477	p.L1159F	0.091	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	148	0	0	93	25	21.19	-	-	-	C	94915619	A	C	94915619	3	2	337	1	0	0	0	0	1	0	0	0	12455	417	15	5	3777	5	PPP1R9A	7	94915619	Missense_Mutation	SNP	A	TCGA-AO-A0JM-01A-21W-A071-09		94915619	64223044	12	36352										
FBXO24	0	genome.wustl.edu	37	chr7	100187289	100187289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	gtgggaaagccagcaggaacGggggggccaagggcctagga	20	8	0	0			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	100187289	100187289	G	T	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	missense	c.26	p.R9L	0.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	23	0	0	4	7	63.64	-	-	-	T	100187289	G	T	100187289	3	4	337	1	0	0	0	0	1	0	0	0	5781	1116	39	3	71	3	FBXO24	7	100187289	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09	5271670	100187289	58951374	13	36353										
C7orf53	0	genome.wustl.edu	37	chr7	112124906	112124906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	ccaggacactggttcttgtgGcattcaggaagatggaaagc	13	8	2	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112124906	112124906	G	A	SNP	C7orf53	ENST00000312849	human	ensembl	69_37n	1	known	missense	c.35	p.G12D	0.000	NULL	NULL	-	no_errors	C7orf53	HGNC	ENSG00000181016	240	0	0	117	30	20.41	-	-	-	A	112124906	G	A	112124906	3	1	337	1	0	0	0	0	1	0	0	0	2425	1203	42	4	37	4	C7orf53	7	112124906	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09	11937617	112124906	47013757	14	36354										
C7orf60	0	genome.wustl.edu	37	chr7	112462138	112462138	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agggactctatagcaatcttCcagcttttcatcatcatagc	6	11	5	0			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112462138	112462138	C	T	SNP	C7orf60	ENST00000297145	human	ensembl	69_37n	-1	known	nonsense	c.879	p.W293*	1.000	pfam_DUF3321	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603	138	0	0	91	23	20.18	-	-	-	T	112462138	C	T	112462138	4	4	337	1	0	0	0	0	0	1	0	0	2430	856	30	2	342	2	C7orf60	7	112462138	Nonsense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09	337232	112462138	46676525	15	36355										
PRKDC	0	genome.wustl.edu	37	chr8	48761994	48761994	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tgttcaagcacacaataaacTtgtcctccatagtattctga	5	10	2	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	8	48761994	48761994	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.7073	p.K2358T	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	252	0	0	73	96	56.8	-	-	-	G	48761994	T	G	48761994	3	3	337	1	0	0	0	0	1	0	0	0	12602	1609	56	5	5446	5	PRKDC	8	48761994	Missense_Mutation	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09		48761994	97602028	16	36356										
ADAMTS13	0	genome.wustl.edu	37	chr9	136319570	136319570	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tcccttggcccatgttcggcCagctgtggccttggcactgc	12	15	0	0			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	9	136319570	136319570	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	silent	c.3078	p.A1026	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	22	0	0	15	4	21.05	-	-	-	T	136319570	C	T	136319570	2	4	337	1	0	0	0	0	0	0	0	1	258	581	21	4		4	ADAMTS13	9	136319570	Silent	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		136319570	4893861	17	36357										
ACTA2	0	genome.wustl.edu	37	chr10	90701048	90701048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tgaggtagtcagtgagatctCggccagccagatccagacgc	13	11	2	4			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	10	90701048	90701048	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	69_37n	-1	known	missense	c.554	p.R185Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA2	HGNC	ENSG00000107796	104	0	0	66	16	19.51	-	-	-	T	90701048	C	T	90701048	3	4	337	1	0	0	0	0	1	0	0	0	192	884	31	1	595	1	ACTA2	10	90701048	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		90701048	44833699	18	36358										
EHBP1L1	0	genome.wustl.edu	37	chr11	65350997	65350998	+	Frame_Shift_Ins	INS	-	-	G													0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agagggcaaatctggggcttINSggggggcccaggaagcagag							TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65350997	65350998	-	G	INS	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	frame_shift_ins	c.2854_2855	p.A954fs	0.003:0.028	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	18	0	0	14	2	12.5	-	-	-	G	65350998	-	G	65350997	7	5	337	1	0	1	1	0	0	0	0	0	5011	1812	63	0	2888	0	EHBP1L1	11	65350997	Frame_Shift_Ins	INS	-	TCGA-AO-A0JM-01A-21W-A071-09		65350997	69655519	19	36359										
ATM	0	genome.wustl.edu	37	chr11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	cagatgaccaagaatgcaaaCgaaatctcaggtgagcagta	10	8	1	4			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	108235935	108235935	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	nonsense	c.8977	p.R2993*	1.000	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	305	0	0	82	139	62.9	-	-	-	T	108235935	C	T	108235935	4	4	337	1	0	0	0	0	0	1	0	0	1113	528	19	1	9219	1	ATM	11	108235935	Nonsense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09	42884938	108235935	26770581	20	36360										
SNX6	0	genome.wustl.edu	37	chr14	35045013	35045013	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tttaaaagatcagaaagtttGaggtcttcatcagcagacac	8	7	4	4			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	35045013	35045013	G	C	SNP	SNX6	ENST00000362031	human	ensembl	69_37n	-1	known	silent	c.906	p.L302	1.000	pfam_Vps5_C,pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515	71	0	0	23	29	55.77	-	-	-	C	35045013	G	C	35045013	2	2	337	1	0	0	0	0	0	0	0	1	14995	1277	45	2		2	SNX6	14	35045013	Silent	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09		35045013	72304527	21	36361										
SYNE2	0	genome.wustl.edu	37	chr14	64428284	64428284	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	atgaaaagtccatcatgaccTatgtggcacagtttctgcag	9	9	2	2			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	64428284	64428284	T	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.829	p.Y277N	0.994	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	72	0	0	45	14	23.73	-	-	-	A	64428284	T	A	64428284	3	1	337	1	0	0	0	0	1	0	0	0	15538	1522	53	5	859	5	SYNE2	14	64428284	Missense_Mutation	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09	29383271	64428284	42921256	22	36362										
SRCAP	0	genome.wustl.edu	37	chr16	30718895	30718895	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	gggtcttcattcccacaggtGgtgcgcatggtgatccggca	14	11	2	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	30718895	30718895	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.495	p.V165	0.980	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	54	0	0	37	13	26	-	-	-	A	30718895	G	A	30718895	2	1	337	1	0	0	0	0	0	0	0	1	15226	1335	47	4		4	SRCAP	16	30718895	Silent	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09		30718895	59635858	23	36363										
PHLPP2	0	genome.wustl.edu	37	chr16	71697861	71697862	+	Frame_Shift_Del	DEL	CC	CC	-													0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	aagattcgcaggtgcaggtgCcctaccaggacaggtatgca							TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	71697861	71697862	CC	-	DEL	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	frame_shift_del	c.1926_1925	p.G642fs	0.959:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	100	0	0	54	7	11.48	-	-	-	-	71697862	CC	-	71697861	7	5	337	1	0	1	0	1	0	0	0	0	11929	726	26	0	2073	0	PHLPP2	16	71697861	Frame_Shift_Del	DEL	CC	TCGA-AO-A0JM-01A-21W-A071-09	40978966	71697861	18656892	24	36364										
GOSR1	0	genome.wustl.edu	37	chr17	28817222	28817222	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agaatcttatgggatcagtaCgaaaagatattgagtaagtt	10	3	2	3			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	17	28817222	28817222	C	T	SNP	GOSR1	ENST00000225724	human	ensembl	69_37n	1	known	nonsense	c.427	p.R143*	1.000	NULL	NULL	-	no_errors	GOSR1	HGNC	ENSG00000108587	101	0	0	71	20	21.74	-	-	-	T	28817222	C	T	28817222	4	4	337	1	0	0	0	0	0	1	0	0	6626	528	19	1	445	1	GOSR1	17	28817222	Nonsense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		28817222	52377988	25	36365										
CHST9	0	genome.wustl.edu	37	chr18	24496830	24496831	+	Frame_Shift_Ins	INS	-	-	A													0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agcattgtgggagatgttgtINSatgcagaggaagccaatcca							TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	18	24496830	24496831	-	A	INS	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	frame_shift_ins	c.725_724	p.Y242fs	0.218:0.145	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	343	0	0	281	72	20.4	-	-	-	A	24496831	-	A	24496830	7	5	337	1	0	1	1	0	0	0	0	0	3440	1638	57	0	610	0	CHST9	18	24496830	Frame_Shift_Ins	INS	-	TCGA-AO-A0JM-01A-21W-A071-09		24496830	53580418	26	36366										
FSD1	0	genome.wustl.edu	37	chr19	4311943	4311943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	acagcaagattgaccactacGtgctggagtaccggcggacc	12	12	0	2			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	4311943	4311943	G	A	SNP	FSD1	ENST00000221856	human	ensembl	69_37n	1	known	missense	c.595	p.V199M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD1	HGNC	ENSG00000105255	20	0	0	4	4	50	-	-	-	A	4311943	G	A	4311943	3	1	337	1	0	0	0	0	1	0	0	0	6119	1145	40	1	621	1	FSD1	19	4311943	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09		4311943	54817040	27	36367										
FBXO27	0	genome.wustl.edu	37	chr19	39517580	39517580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agaatttatctagaacagtcTggttggcgtctagaagttgg	12	5	3	3			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	39517580	39517580	T	C	SNP	FBXO27	ENST00000292853	human	ensembl	69_37n	-1	known	missense	c.638	p.Q213R	0.360	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO27	HGNC	ENSG00000161243	178	0	0	25	42	62.69	-	-	-	C	39517580	T	C	39517580	3	2	337	1	0	0	0	0	1	0	0	0	5783	1580	55	5	221	5	FBXO27	19	39517580	Missense_Mutation	SNP	T	TCGA-AO-A0JM-01A-21W-A071-09	35205637	39517580	19611403	28	36368										
RASSF2	0	genome.wustl.edu	37	chr20	4776604	4776604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	agcccctccacaatgaactcGtcttcttcctgcccacaaag	5	17	2	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	20	4776604	4776604	G	A	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	silent	c.144	p.D48	0.938	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF2	HGNC	ENSG00000101265	118	0	0	72	16	18.18	-	-	-	A	4776604	G	A	4776604	2	1	337	1	0	0	0	0	0	0	0	1	13169	1136	40	1		1	RASSF2	20	4776604	Silent	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09		4776604	58248916	29	36369										
ADAMTS5	0	genome.wustl.edu	37	chr21	28337771	28337771	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	caccaccaccttcaccacggCcaggcggatgtggttctcga	10	16	2	0			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	21	28337771	28337771	C	G	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.940	p.A314P	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	98	0	0	63	11	14.86	-	-	-	G	28337771	C	G	28337771	3	3	337	1	0	0	0	0	1	0	0	0	269	739	26	4	1884	4	ADAMTS5	21	28337771	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		28337771	19792124	30	36370										
GTSE1	0	genome.wustl.edu	37	chr22	46712078	46712078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	cctggcaggccaagcgggtcGatgtttctgagctggcagcg	16	11	1	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	22	46712078	46712078	G	A	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1201	p.D401N	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	78	0	0	18	38	67.86	-	-	-	A	46712078	G	A	46712078	3	1	337	1	0	0	0	0	1	0	0	0	6936	1058	37	1	1223	1	GTSE1	22	46712078	Missense_Mutation	SNP	G	TCGA-AO-A0JM-01A-21W-A071-09		46712078	4592488	31	36371										
ARHGAP36	0	genome.wustl.edu	37	chrX	130220600	130220600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.129032258064516	4	0.871886716160037	1.04093567251462	2.96666666666667	0.353174603174603	0.485714285714286	1	0	tggaaacctctgctgaagccCgggctgctgtccttgctcaa	11	13	2	1			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	X	130220600	130220600	C	T	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1447	p.R483W	0.001	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	294	1	0.34	100	18	15.25	-	-	-	T	130220600	C	T	130220600	3	4	337	1	0	0	0	0	1	0	0	0	885	643	23	1	1485	1	ARHGAP36	23	130220600	Missense_Mutation	SNP	C	TCGA-AO-A0JM-01A-21W-A071-09		130220600	25049960	32	36372										
ATAD3B	0	genome.wustl.edu	37	chr1	1426042	1426042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gagatcgctcagctggccgtGtcctggcaggtgagtcaggc	16	11	2	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	1426042	1426042	G	A	SNP	ATAD3B	ENST00000308647	human	ensembl	69_37n	1	known	silent	c.1605	p.V535	1.000	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	23	0	0	4	29	87.88	-	-	-	A	1426042	G	A	1426042	2	1	338	1	0	0	0	0	0	0	0	1	1078	1364	48	4		4	ATAD3B	1	1426042	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		1426042	247824579	1	36373										
EIF2C4	0	genome.wustl.edu	37	chr1	36298161	36298161	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctcagaaacaatgtagggaaGatttactaaagtgagtatct	9	5	2	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	36298161	36298161	G	A	SNP	EIF2C4	ENST00000373210	human	ensembl	69_37n	1	known	missense	c.1369	p.D457N	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C4	HGNC	ENSG00000134698	233	0	0	81	56	40.58	-	-	-	A	36298161	G	A	36298161	3	1	338	1	0	0	0	0	1	0	0	0	5043	942	33	2	1411	2	EIF2C4	1	36298161	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	34872119	36298161	212952460	2	36374										
CSF3R	0	genome.wustl.edu	37	chr1	36940986	36940986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ggaaggacttacagcctgcgCgcagctcaacctggtccagg	13	13	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	36940986	36940986	C	G	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.353	p.R118P	0.041	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	35	0	0	28	25	47.17	-	-	-	G	36940986	C	G	36940986	3	3	338	1	0	0	0	0	1	0	0	0	3969	768	27	3	2403	3	CSF3R	1	36940986	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	642825	36940986	212309635	3	36375										
LEPR	0	genome.wustl.edu	37	chr1	66036458	66036458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gaaagacatttgtttcaacaGtaaattctttagtttttcaa	5	5	3	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	66036458	66036458	G	A	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	missense	c.343	p.V115I	0.058	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	132	0	0	71	12	14.46	-	-	-	A	66036458	G	A	66036458	3	1	338	1	0	0	0	0	1	0	0	0	8782	1029	36	4	349	4	LEPR	1	66036458	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	29095472	66036458	183214163	4	36376										
LRRC7	0	genome.wustl.edu	37	chr1	70460297	70460297	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atgacaatcaacttacaatgCtacccaatacaattggaaag	5	9	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	70460297	70460297	C	A	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.871	p.L291I	0.152	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	202	0	0	111	34	23.45	-	-	-	A	70460297	C	A	70460297	3	1	338	1	0	0	0	0	1	0	0	0	9086	796	28	4	905	4	LRRC7	1	70460297	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	4423839	70460297	178790324	5	36377										
SLC44A3	0	genome.wustl.edu	37	chr1	95330335	95330335	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cctgatcatcccatcctttcGtctctctccattctcttctt	2	17	5	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	95330335	95330335	G	C	SNP	SLC44A3	ENST00000271227	human	ensembl	69_37n	1	known	silent	c.1275	p.S425	0.005	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036	233	0	0	73	46	38.33	-	-	-	C	95330335	G	C	95330335	2	2	338	1	0	0	0	0	0	0	0	1	14726	1132	40	3		3	SLC44A3	1	95330335	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	24870038	95330335	153920286	6	36378										
RNPC3	0	genome.wustl.edu	37	chr1	104068843	104068843	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aggacttgctgaagtacttcGgggctcagtctgtgcgggtc	15	9	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	104068843	104068843	G	C	SNP	RNPC3	ENST00000423855	human	ensembl	69_37n	1	known	missense	c.151	p.G51R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	43	0	0	44	22	33.33	-	-	-	C	104068843	G	C	104068843	3	2	338	1	0	0	0	0	1	0	0	0	13594	1116	39	3	153	3	RNPC3	1	104068843	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	8738508	104068843	145181778	7	36379										
HIPK1	0	genome.wustl.edu	37	chr1	114483129	114483129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gacagagtagcaacgacaaaTattatacccacagcaaaacc	6	11	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	114483129	114483129	T	G	SNP	HIPK1	ENST00000369558	human	ensembl	69_37n	1	known	missense	c.124	p.Y42D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349	116	0	0	17	113	86.92	-	-	-	G	114483129	T	G	114483129	3	3	338	1	0	0	0	0	1	0	0	0	7167	1406	49	5	126	5	HIPK1	1	114483129	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	10414286	114483129	134767492	8	36380										
ANKRD35	0	genome.wustl.edu	37	chr1	145558223	145558223	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgcagcatggtgctaatgaaGatgctgtggatgcagaaaac	13	6	0	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	145558223	145558223	G	A	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	missense	c.340	p.D114N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	56	0	0	131	21	13.73	-	-	-	A	145558223	G	A	145558223	3	1	338	1	0	0	0	0	1	0	0	0	663	942	33	2	358	2	ANKRD35	1	145558223	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	31075094	145558223	103692398	9	36381										
NBPF14	0	genome.wustl.edu	37	chr1	148004597	148004597	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	acaccaggtggagacttgtcAccgtcaaagtaaaaaaccta	8	10	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	148004597	148004597	A	T	SNP	NBPF14	ENST00000369219	human	ensembl	69_37n	-1	known	missense	c.2717	p.V906E	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	495	1	0.2	370	91	19.61	-	-	-	T	148004597	A	T	148004597	3	4	338	1	0	0	0	0	1	0	0	0	10266	159	6	5	52	5	NBPF14	1	148004597	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	2446374	148004597	101246024	10	36382										
SHE	0	genome.wustl.edu	37	chr1	154458425	154458425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggggcttacttactttaggGcaatggagtacctgctgttc	12	8	0	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	154458425	154458425	G	A	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	missense	c.1295	p.A432V	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	111	0	0	96	30	23.62	-	-	-	A	154458425	G	A	154458425	3	1	338	1	0	0	0	0	1	0	0	0	14365	1203	42	4	200	4	SHE	1	154458425	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	6453828	154458425	94792196	11	36383										
SPTA1	0	genome.wustl.edu	37	chr1	158646004	158646004	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctcccagctggagaccagatCttctttcatctcctggatct	7	14	5	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	158646004	158646004	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1039	p.D347Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	115	0	0	71	58	44.96	-	-	-	A	158646004	C	A	158646004	3	1	338	1	0	0	0	0	1	0	0	0	15207	913	32	2	6400	2	SPTA1	1	158646004	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	4187579	158646004	90604617	12	36384										
OR6K2	0	genome.wustl.edu	37	chr1	158669493	158669493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atatcttacttgaggtccctGgtcttacggaaaaaaatatc	7	8	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	158669493	158669493	G	T	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	missense	c.950	p.P317Q	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	172	0	0	79	55	40.74	-	-	-	T	158669493	G	T	158669493	3	4	338	1	0	0	0	0	1	0	0	0	11275	1348	47	4	28	4	OR6K2	1	158669493	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	23489	158669493	90581128	13	36385										
MNDA	0	genome.wustl.edu	37	chr1	158818988	158818988	+	Frame_Shift_Del	DEL	G	G	-													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctctctttaaaggtcatcaaGgccaagaaaaacaaggaagg							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	158818988	158818988	G	-	DEL	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	frame_shift_del	c.1185	p.A396fs	0.105	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	269	0	0	137	28	16.77	-	-	-	-	158818988	G	-	158818988	7	5	338	1	0	1	0	1	0	0	0	0	9748	991	35	0	1207	0	MNDA	1	158818988	Frame_Shift_Del	DEL	G	TCGA-AO-A124-01A-11D-A10M-09	149495	158818988	90431633	14	36386										
F5	0	genome.wustl.edu	37	chr1	169511128	169511128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggatttatgaagcaccaacGaatgcttaagtcttctttct	7	8	3	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	169511128	169511128	G	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3215	p.S1072L	0.091	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	239	0	0	152	101	39.76	-	-	-	A	169511128	G	A	169511128	3	1	338	1	0	0	0	0	1	0	0	0	5385	1059	37	1	3526	1	F5	1	169511128	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	10692140	169511128	79739493	15	36387										
RC3H1	0	genome.wustl.edu	37	chr1	173916616	173916616	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gagatggcaccaaaccgagaCactgttggtcggtctccaaa	11	11	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	173916616	173916616	C	G	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	silent	c.2628	p.V876	0.077	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	201	0	0	197	45	18.6	-	-	-	G	173916616	C	G	173916616	2	3	338	1	0	0	0	0	0	0	0	1	13249	465	17	4		4	RC3H1	1	173916616	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	4405488	173916616	75334005	16	36388										
SLC30A1	0	genome.wustl.edu	37	chr1	211751857	211751857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cggagagcatcgccagcgacGaggtcacccggctcaccacc	12	17	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	211751857	211751857	G	A	SNP	SLC30A1	ENST00000367001	human	ensembl	69_37n	-1	known	missense	c.98	p.S33L	0.998	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385	15	0	0	19	9	32.14	-	-	-	A	211751857	G	A	211751857	3	1	338	1	0	0	0	0	1	0	0	0	14642	1059	37	1	1433	1	SLC30A1	1	211751857	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	37835241	211751857	37498764	17	36389										
RYR2	0	genome.wustl.edu	37	chr1	237801707	237801707	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	caaagttgccagatgctggtGtctaagggctatccagacat	11	9	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	237801707	237801707	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.6837	p.V2279	0.080	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	376	0	0	564	111	16.37	-	-	-	A	237801707	G	A	237801707	2	1	338	1	0	0	0	0	0	0	0	1	13855	1364	48	4		4	RYR2	1	237801707	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	26049850	237801707	11448914	18	36390										
RYR2	0	genome.wustl.edu	37	chr1	237947615	237947615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gacaccatctttgaaatgcaGctggcggctcagatctcgga	11	11	3	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	237947615	237947615	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.12621	p.Q4207H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	55	0	0	212	32	13.11	-	-	-	T	237947615	G	T	237947615	3	4	338	1	0	0	0	0	1	0	0	0	13855	962	34	4	12961	4	RYR2	1	237947615	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	145908	237947615	11303006	19	36391										
CEP170	0	genome.wustl.edu	37	chr1	243327823	243327823	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aggctgagccaataaatcaaTccgagagatgttacgccttc	9	10	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	243327823	243327823	T	C	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.3439	p.I1147V	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	52	0	0	51	62	54.87	-	-	-	C	243327823	T	C	243327823	3	2	338	1	0	0	0	0	1	0	0	0	3279	1435	50	5	1377	5	CEP170	1	243327823	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	5380208	243327823	5922798	20	36392										
OR13G1	0	genome.wustl.edu	37	chr1	247836055	247836055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ccatgtgaacaagaagagctGggacatgcagcctgcatatg	12	9	0	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	247836055	247836055	G	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.289	p.Q97K	0.959	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	39	0	0	99	23	18.7	-	-	-	T	247836055	G	T	247836055	3	4	338	1	0	0	0	0	1	0	0	0	11015	1357	47	4	638	4	OR13G1	1	247836055	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	4508232	247836055	1414566	21	36393										
OR2T2	0	genome.wustl.edu	37	chr1	248616764	248616764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tctgtctcctacacgcacatCctcctgactgtccacaggat	6	16	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	1	248616764	248616764	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.666	p.I222	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	87	0	0	42	18	30	-	-	-	T	248616764	C	T	248616764	2	4	338	1	0	0	0	0	0	0	0	1	11093	845	30	2		2	OR2T2	1	248616764	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	780709	248616764	633857	22	36394										
APOB	0	genome.wustl.edu	37	chr2	21235092	21235092	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttaatgatgccactttgcaGatcagaggtggaggtgaggg	15	5	1	4			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	21235092	21235092	G	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.4648	p.L1550M	0.627	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	153	0	0	108	94	46.53	-	-	-	T	21235092	G	T	21235092	3	4	338	1	0	0	0	0	1	0	0	0	787	933	33	2	9059	2	APOB	2	21235092	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		21235092	221964281	23	36395										
FAM98A	0	genome.wustl.edu	37	chr2	33810192	33810192	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gatagccacctggctggaaaCctgaatctcgataaccacca	8	13	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	33810192	33810192	C	G	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.1208	p.G403A	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	265	0	0	274	126	31.34	-	-	-	G	33810192	C	G	33810192	3	3	338	1	0	0	0	0	1	0	0	0	5702	507	18	4	352	4	FAM98A	2	33810192	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	12575100	33810192	209389181	24	36396										
SPTBN1	0	genome.wustl.edu	37	chr2	54859818	54859818	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	caatgaggagaagatcaatgCtgtggtggagactggccgga	16	6	1	4			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	54859818	54859818	C	G	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.3680	p.A1227G	0.992	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	99	0	0	21	131	85.06	-	-	-	G	54859818	C	G	54859818	3	3	338	1	0	0	0	0	1	0	0	0	15210	797	28	4	3855	4	SPTBN1	2	54859818	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	21049626	54859818	188339555	25	36397										
LRRTM1	0	genome.wustl.edu	37	chr2	80529665	80529665	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ccatggtgcccgtgaccaccTtgtggatctgcacggcgttc	12	14	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	80529665	80529665	T	A	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	missense	c.1280	p.K427M	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	19	0	0	30	15	32.61	-	-	-	A	80529665	T	A	80529665	3	1	338	1	0	0	0	0	1	0	0	0	9105	1609	56	5	292	5	LRRTM1	2	80529665	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	25669847	80529665	162669708	26	36398										
SLC9A2	0	genome.wustl.edu	37	chr2	103321040	103321040	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	acacagtctgacagccgacaCaagtgagagacaagccaagg	11	11	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	103321040	103321040	C	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.1883	p.T628R	0.987	prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	87	0	0	186	39	17.26	-	-	-	G	103321040	C	G	103321040	3	3	338	1	0	0	0	0	1	0	0	0	14801	478	17	4	1921	4	SLC9A2	2	103321040	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	22791375	103321040	139878333	27	36399										
YSK4	0	genome.wustl.edu	37	chr2	135744731	135744731	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	caaagccgggaaaatttgtgTttttatgctggttttatgca	10	5	0	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	135744731	135744731	T	G	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.1711	p.T571P	0.085	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	227	0	0	121	69	36.32	-	-	-	G	135744731	T	G	135744731	3	3	338	1	0	0	0	0	1	0	0	0	17592	1725	60	5	2291	5	YSK4	2	135744731	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	32423691	135744731	107454642	28	36400										
CRYGC	0	genome.wustl.edu	37	chr2	208993146	208993146	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cagtcttcactcagctccatCatgaggcctttgtggtcttc	8	13	5	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	208993146	208993146	C	A	SNP	CRYGC	ENST00000282141	human	ensembl	69_37n	-1	known	missense	c.306	p.M102I	0.992	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254	21	0	0	0	18	100	-	-	-	A	208993146	C	A	208993146	3	1	338	1	0	0	0	0	1	0	0	0	3946	826	29	2	222	2	CRYGC	2	208993146	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	73248415	208993146	34206227	29	36401			1	62		2	2	21	C		8.269271e-05
CRYGC	0	genome.wustl.edu	37	chr2	208993166	208993166	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	catgaggcctttgtggtcttCcctctcgtacagccgcagcc	10	15	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	2	208993166	208993166	C	A	SNP	CRYGC	ENST00000282141	human	ensembl	69_37n	-1	known	nonsense	c.286	p.E96*	0.891	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254	20	0	0	0	15	100	-	-	-	A	208993166	C	A	208993166	4	1	338	1	0	0	0	0	0	1	0	0	3946	864	30	2	242	2	CRYGC	2	208993166	Nonsense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	20	208993166	34206207	30	36402			1	62		2	2	21	C		8.269271e-05
DLEC1	0	genome.wustl.edu	37	chr3	38080927	38080927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gccgcctcacgcagcttgcgCtggcgcagcgtcccgagcct	13	18	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	38080927	38080927	C	G	SNP	DLEC1	ENST00000346219	human	ensembl	69_37n	1	known	missense	c.211	p.L71V	0.004	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	17	0	0	14	11	44	-	-	-	G	38080927	C	G	38080927	3	3	338	1	0	0	0	0	1	0	0	0	4588	796	28	4	213	4	DLEC1	3	38080927	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		38080927	159941503	31	36403										
CACNA2D3	0	genome.wustl.edu	37	chr3	54905585	54905585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gtacgaagaaggaaaaaagcGaaggaaacctaactatagta	10	5	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	54905585	54905585	G	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.1646	p.R549L	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	199	0	0	91	58	38.93	-	-	-	T	54905585	G	T	54905585	3	4	338	1	0	0	0	0	1	0	0	0	2575	1058	37	3	1716	3	CACNA2D3	3	54905585	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	16824658	54905585	143116845	32	36404										
ROBO1	0	genome.wustl.edu	37	chr3	78737828	78737828	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tctctcctccagaaaatagcTggttgaggatttccggttgc	10	10	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	78737828	78737828	T	A	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	silent	c.1140	p.P380	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	153	0	0	19	74	79.57	-	-	-	A	78737828	T	A	78737828	2	1	338	1	0	0	0	0	0	0	0	1	13599	1567	55	5		5	ROBO1	3	78737828	Silent	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	23832243	78737828	119284602	33	36405										
CPNE4	0	genome.wustl.edu	37	chr3	131300432	131300432	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgtgtacataccttgcacagAttcagaatcacagtgcctga	8	10	2	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	131300432	131300432	A	T	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	missense	c.912	p.N304K	1.000	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	258	0	0	99	42	29.37	-	-	-	T	131300432	A	T	131300432	3	4	338	1	0	0	0	0	1	0	0	0	3844	330	12	5	847	5	CPNE4	3	131300432	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	52562604	131300432	66721998	34	36406										
RARRES1	0	genome.wustl.edu	37	chr3	158431599	158431600	+	Frame_Shift_Ins	INS	-	-	T													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gcttacctctgggttgtagcINSgctctgtgctgaagaccacg							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	158431599	158431600	-	T	INS	RARRES1	ENST00000237696	human	ensembl	69_37n	-1	known	frame_shift_ins	c.326_325	p.R109fs	0.001:0.000	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	-	no_errors	RARRES1	HGNC	ENSG00000118849	150	0	0	170	60	26.09	-	-	-	T	158431600	-	T	158431599	7	5	338	1	0	1	1	0	0	0	0	0	13138	768	27	0	593	0	RARRES1	3	158431599	Frame_Shift_Ins	INS	-	TCGA-AO-A124-01A-11D-A10M-09	27131167	158431599	39590831	35	36407										
ZBBX	0	genome.wustl.edu	37	chr3	167023671	167023671	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aaggaggtgctttcctcaatTttttcaatgtcagaagaata	8	6	3	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	167023671	167023671	T	A	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.1485	p.K495N	0.000	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	221	0	0	135	27	16.56	-	-	-	A	167023671	T	A	167023671	3	1	338	1	0	0	0	0	1	0	0	0	17613	1838	64	5	937	5	ZBBX	3	167023671	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	8592072	167023671	30998759	36	36408										
TBCCD1	0	genome.wustl.edu	37	chr3	186272045	186272045	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cttgtaaaaaatactcacttTgtcaaatgagcctccttcac	4	11	3	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	3	186272045	186272045	T	G	SNP	TBCCD1	ENST00000338733	human	ensembl	69_37n	-1	known	silent	c.1542	p.T514	1.000	NULL	pfam_Tubulin-bd_cofactor_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	TBCCD1	HGNC	ENSG00000113838	50	0	0	39	10	20.41	-	-	-	G	186272045	T	G	186272045	2	3	338	1	0	0	0	0	0	0	0	1	15727	1799	63	5		5	TBCCD1	3	186272045	Silent	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	19248374	186272045	11750385	37	36409										
C4orf36	0	genome.wustl.edu	37	chr4	87809333	87809333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	attttgtgagctgcacagaaCcaccaaatgaaatttcttcc	6	10	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	4	87809333	87809333	C	T	SNP	C4orf36	ENST00000295898	human	ensembl	69_37n	-1	known	missense	c.161	p.G54D	0.000	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633	181	0	0	20	56	73.68	-	-	-	T	87809333	C	T	87809333	3	4	338	1	0	0	0	0	1	0	0	0	2287	507	18	4	200	4	C4orf36	4	87809333	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		87809333	103344943	38	36410										
WDR17	0	genome.wustl.edu	37	chr4	177036997	177036998	+	Frame_Shift_Ins	INS	-	-	A													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	acgcaattatgtctgaacatINSaaaaaaacaatcacagcaat							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	4	177036997	177036998	-	A	INS	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	frame_shift_ins	c.246_247	p.T84fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	295	0	0	81	24	22.86	-	-	-	A	177036998	-	A	177036997	7	5	338	1	0	1	1	0	0	0	0	0	17374	1403	49	0	256	0	WDR17	4	177036997	Frame_Shift_Ins	INS	-	TCGA-AO-A124-01A-11D-A10M-09	89227664	177036997	14117279	39	36411										
NIPBL	0	genome.wustl.edu	37	chr5	37008133	37008134	+	Frame_Shift_Ins	INS	-	-	T													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	catctatgggaataacaccaINSttttttgtggaaaatgtcag							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	5	37008133	37008134	-	T	INS	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	frame_shift_ins	c.4263_4264	p.V1423fs	0.998:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	263	0	0	71	75	51.37	-	-	-	T	37008134	-	T	37008133	7	5	338	1	0	1	1	0	0	0	0	0	10500	204	8	0	4333	0	NIPBL	5	37008133	Frame_Shift_Ins	INS	-	TCGA-AO-A124-01A-11D-A10M-09		37008133	143907127	40	36412										
CMYA5	0	genome.wustl.edu	37	chr5	79030062	79030062	+	Frame_Shift_Del	DEL	A	A	-													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgtagaacaaaaaaagacagAaaaagcacttcattcagatc							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	5	79030062	79030062	A	-	DEL	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	frame_shift_del	c.5474	p.A1827fs	0.001	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	119	0	0	40	17	29.82	-	-	-	-	79030062	A	-	79030062	7	5	338	1	0	1	0	1	0	0	0	0	3620	246	9	0	5480	0	CMYA5	5	79030062	Frame_Shift_Del	DEL	A	TCGA-AO-A124-01A-11D-A10M-09	42021929	79030062	101885198	41	36413										
DMXL1	0	genome.wustl.edu	37	chr5	118573104	118573104	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctggaagcatgcctaagccaTacctggtaagccaagaattt	9	10	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	5	118573104	118573104	T	C	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.8554	p.Y2852H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	124	0	0	5	29	85.29	-	-	-	C	118573104	T	C	118573104	3	2	338	1	0	0	0	0	1	0	0	0	4630	1406	49	5	8645	5	DMXL1	5	118573104	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	39543042	118573104	62342156	42	36414										
LMAN2	0	genome.wustl.edu	37	chr5	176778492	176778492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cgaatgctcccgcttgagatGttcactgttgccgtcagtta	10	11	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	5	176778492	176778492	G	A	SNP	LMAN2	ENST00000303127	human	ensembl	69_37n	-1	known	missense	c.157	p.H53Y	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN2	HGNC	ENSG00000169223	37	0	0	34	34	50	-	-	-	A	176778492	G	A	176778492	3	1	338	1	0	0	0	0	1	0	0	0	8894	1377	48	4	945	4	LMAN2	5	176778492	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	58205388	176778492	4136768	43	36415										
TRIM41	0	genome.wustl.edu	37	chr5	180661772	180661772	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	acccgcatcaagctctgcccTtgattatcctgccacccgca	6	18	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	5	180661772	180661772	T	C	SNP	TRIM41	ENST00000315073	human	ensembl	69_37n	1	known	silent	c.1890	p.P630	0.994	superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063	34	0	0	36	34	48.57	-	-	-	C	180661772	T	C	180661772	2	2	338	1	0	0	0	0	0	0	0	1	16612	1596	56	5		5	TRIM41	5	180661772	Silent	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	3883280	180661772	253488	44	36416										
PRPF4B	0	genome.wustl.edu	37	chr6	4032461	4032461	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	taagtctcaagatcaagcaaGgaaatcaaaatcccctaccc	5	12	3	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	4032461	4032461	G	C	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.710	p.R237T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	109	0	0	52	39	42.86	-	-	-	C	4032461	G	C	4032461	3	2	338	1	0	0	0	0	1	0	0	0	12654	1000	35	4	716	4	PRPF4B	6	4032461	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		4032461	167082606	45	36417										
FKBPL	0	genome.wustl.edu	37	chr6	32097227	32097227	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttgtccaagccatggccacGgattacgatcttcttgacaa	8	11	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	32097227	32097227	G	C	SNP	FKBPL	ENST00000375156	human	ensembl	69_37n	-1	known	missense	c.331	p.R111G	0.002	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FKBPL	HGNC	ENSG00000204315	71	0	0	78	55	41.35	-	-	-	C	32097227	G	C	32097227	3	2	338	1	0	0	0	0	1	0	0	0	5962	1116	39	3	722	3	FKBPL	6	32097227	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	28064766	32097227	139017840	46	36418										
C6orf89	0	genome.wustl.edu	37	chr6	36882408	36882408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cgacagaaggcttctctgaaGggtttttcgccaagtggtgg	14	8	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	36882408	36882408	G	A	SNP	C6orf89	ENST00000355190	human	ensembl	69_37n	1	known	missense	c.655	p.G219R	0.994	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	180	0	0	230	65	21.96	-	-	-	A	36882408	G	A	36882408	3	1	338	1	0	0	0	0	1	0	0	0	2395	1000	35	4	673	4	C6orf89	6	36882408	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	4785181	36882408	134232659	47	36419										
FRS3	0	genome.wustl.edu	37	chr6	41738737	41738737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gggcttctgcagtggggtctCgtcctcctcaccatcaggga	13	13	4	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	41738737	41738737	C	T	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.1099	p.E367K	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	10	0	0	9	14	60.87	-	-	-	T	41738737	C	T	41738737	3	4	338	1	0	0	0	0	1	0	0	0	6111	893	31	1	383	1	FRS3	6	41738737	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	4856329	41738737	129376330	48	36420										
SNAP91	0	genome.wustl.edu	37	chr6	84324580	84324580	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tccatacagtactcacccttCacttaagttccaaggtaagc	5	13	2	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	84324580	84324580	C	T	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.880	p.E294K	1.000	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	184	0	0	57	69	54.76	-	-	-	T	84324580	C	T	84324580	3	4	338	1	0	0	0	0	1	0	0	0	14922	841	29	2		2	SNAP91	6	84324580	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	42585843	84324580	86790487	49	36421										
TBX18	0	genome.wustl.edu	37	chr6	85457662	85457662	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgattctgataggcagtgacGgttgtgaagacagtttctgg	14	5	2	5			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	85457662	85457662	G	T	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	silent	c.915	p.T305	0.975	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	141	0	0	82	104	55.91	-	-	-	T	85457662	G	T	85457662	2	4	338	1	0	0	0	0	0	0	0	1	15748	1103	39	3		3	TBX18	6	85457662	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	1133082	85457662	85657405	50	36422										
MICAL1	0	genome.wustl.edu	37	chr6	109766449	109766449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ttcacgccctcggcctctagCtccctcaaggcagcctcaat	7	18	4	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	109766449	109766449	C	G	SNP	MICAL1	ENST00000368952	human	ensembl	69_37n	-1	known	missense	c.2889	p.E963D	0.950	pfam_DUF3585	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596	48	0	0	221	49	18.08	-	-	-	G	109766449	C	G	109766449	3	3	338	1	0	0	0	0	1	0	0	0	9640	796	28	4	387	4	MICAL1	6	109766449	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	24308787	109766449	61348618	51	36423										
MAN1A1	0	genome.wustl.edu	37	chr6	119501033	119501033	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tatctttagggaggatagggAgaagatgtgcctcgctattg	14	5	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	119501033	119501033	A	G	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.1913	p.L638P	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	216	0	0	166	46	21.7	-	-	-	G	119501033	A	G	119501033	3	3	338	1	0	0	0	0	1	0	0	0	9281	304	11	5	52	5	MAN1A1	6	119501033	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	9734584	119501033	51614034	52	36424										
SYNE1	0	genome.wustl.edu	37	chr6	152546921	152546921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gctcatgacaatgctagagaCgtcttctttcttgttctgaa	8	9	5	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	6	152546921	152546921	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.21286	p.V7096L	0.992	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	572	0	0	456	166	26.6	-	-	-	G	152546921	C	G	152546921	3	3	338	1	0	0	0	0	1	0	0	0	15537	536	19	3	5304	3	SYNE1	6	152546921	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	33045888	152546921	18568146	53	36425										
HEATR2	0	genome.wustl.edu	37	chr7	825272	825272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctcctgcagcatgtgcaggcCgtgccagccacacagtgacc	11	16	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	825272	825272	C	T	SNP	HEATR2	ENST00000440747	human	ensembl	69_37n	1	novel	missense	c.1954	p.R652C	0.079	NULL	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR2	HGNC	ENSG00000164818	24	0	0	41	12	22.22	-	-	-	T	825272	C	T	825272	3	4	338	1	0	0	0	0	1	0	0	0	7079	639	23	1	2600	1	HEATR2	7	825272	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		825272	158313391	54	36426										
HECW1	0	genome.wustl.edu	37	chr7	43601517	43601517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aggaaaccagcacctttggaCttgagtgaggacatggaacc	12	9	0	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	43601517	43601517	C	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.4813	p.L1605I	1.000	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	93	0	0	149	45	23.2	-	-	-	A	43601517	C	A	43601517	3	1	338	1	0	0	0	0	1	0	0	0	7093	565	20	4	4923	4	HECW1	7	43601517	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	42776245	43601517	115537146	55	36427										
DDX56	0	genome.wustl.edu	37	chr7	44606075	44606075	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcctacaagaggaagacagcTtcttccgcttcttgtgaggg	11	10	2	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	44606075	44606075	T	C	SNP	DDX56	ENST00000258772	human	ensembl	69_37n	-1	known	missense	c.1538	p.K513R	0.973	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX56	HGNC	ENSG00000136271	17	0	0	45	8	15.09	-	-	-	C	44606075	T	C	44606075	3	2	338	1	0	0	0	0	1	0	0	0	4405	1609	56	5	113	5	DDX56	7	44606075	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	1004558	44606075	114532588	56	36428										
ELN	0	genome.wustl.edu	37	chr7	73462496	73462496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgggcccggaggagtggctgGtgcagcgggcaaggctggtt	21	8	0	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	73462496	73462496	G	A	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.710	p.G237D	0.739	prints_Tropoelastin	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	34	0	0	48	11	18.64	-	-	-	A	73462496	G	A	73462496	3	1	338	1	0	0	0	0	1	0	0	0	5108	1261	44	4	779	4	ELN	7	73462496	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	28856421	73462496	85676167	57	36429										
SEMA3C	0	genome.wustl.edu	37	chr7	80447661	80447661	+	Missense_Mutation	SNP	G	G	A													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aagtacagacaggactgaaaGcgccactcccacagacatac							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	80447661	80447661	G	A	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	missense	c.455	p.A152V	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	145	0	0	65	25	27.78	-	-	-	A	80447661	G	A	80447661	3	1	338	1	0	0	0	0	1	0	0	0	14114	971	34	4	1910	4	SEMA3C	7	80447661	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	6985165	80447661	78691002	58	36430	294	2								
SEMA3C	0	genome.wustl.edu	37	chr7	80447662	80447662	+	Missense_Mutation	SNP	C	C	T													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	agtacagacaggactgaaagCgccactcccacagacataca							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	80447662	80447662	C	T	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	missense	c.454	p.A152T	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	147	0	0	66	25	27.47	-	-	-	T	80447662	C	T	80447662	3	4	338	1	0	0	0	0	1	0	0	0	14114	768	27	1	1911	1	SEMA3C	7	80447662	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	1	80447662	78691001	59	36431	294	2								
EPHB4	0	genome.wustl.edu	37	chr7	100417260	100417260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	taccccgttcaatgcagtgaCctcaaaggtataggtgaagt	10	9	2	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	100417260	100417260	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	missense	c.1216	p.V406I	0.951	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	17	0	0	41	11	21.15	-	-	-	T	100417260	C	T	100417260	3	4	338	1	0	0	0	0	1	0	0	0	5214	507	18	4	1795	4	EPHB4	7	100417260	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	19969598	100417260	58721403	60	36432										
TRIM56	0	genome.wustl.edu	37	chr7	100730642	100730642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcctggaggccctgagcagcGacttcctggcctgtaaaatc	11	13	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	100730642	100730642	G	T	SNP	TRIM56	ENST00000306085	human	ensembl	69_37n	1	known	missense	c.49	p.D17Y	0.954	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871	11	0	0	30	7	18.92	-	-	-	T	100730642	G	T	100730642	3	4	338	1	0	0	0	0	1	0	0	0	16626	1058	37	3	51	3	TRIM56	7	100730642	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	313382	100730642	58408021	61	36433										
CFTR	0	genome.wustl.edu	37	chr7	117282532	117282532	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggatcagggaagagtacttTgttatcagcttttttgagac	11	5	2	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	117282532	117282532	T	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.3758	p.L1253S	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	229	0	0	54	34	38.64	-	-	-	C	117282532	T	C	117282532	3	2	338	1	0	0	0	0	1	0	0	0	3323	1821	63	5	3848	5	CFTR	7	117282532	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	16551890	117282532	41856131	62	36434										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138732379	138732379	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ttgtcttcagtatattcaatCacatattgtgggtaaacctg	7	7	4	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	138732379	138732379	C	A	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	silent	c.2670	p.V890	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	119	0	0	40	29	42.03	-	-	-	A	138732379	C	A	138732379	2	1	338	1	0	0	0	0	0	0	0	1	17671	813	29	2		2	ZC3HAV1	7	138732379	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	21449847	138732379	20406284	63	36435										
MKRN1	0	genome.wustl.edu	37	chr7	140154472	140154472	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctcttcttcatcgttgtcaaAggggttgctgttctctcttt	8	10	6	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	140154472	140154472	A	T	SNP	MKRN1	ENST00000255977	human	ensembl	69_37n	-1	known	missense	c.1294	p.F432I	1.000	NULL	pfam_Znf_CCCH,pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN1	HGNC	ENSG00000133606	321	0	0	30	213	86.59	-	-	-	T	140154472	A	T	140154472	3	4	338	1	0	0	0	0	1	0	0	0	9677	72	3	5	158	5	MKRN1	7	140154472	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	1422093	140154472	18984191	64	36436										
GIMAP2	0	genome.wustl.edu	37	chr7	150389497	150389497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aaaagtgctgcagggaacagCatcctcaggaagcaagcatt	11	9	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	150389497	150389497	C	T	SNP	GIMAP2	ENST00000223293	human	ensembl	69_37n	1	known	silent	c.123	p.S41	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP2	HGNC	ENSG00000106560	37	0	0	14	27	65.85	-	-	-	T	150389497	C	T	150389497	2	4	338	1	0	0	0	0	0	0	0	1	6432	709	25	4		4	GIMAP2	7	150389497	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	10235025	150389497	8749166	65	36437										
HTR5A	0	genome.wustl.edu	37	chr7	154863184	154863184	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctctgagggcagcgaggagtGccaggtaagccgcgagcctt	16	11	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	7	154863184	154863184	G	T	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	1	known	missense	c.575	p.C192F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	26	0	0	26	43	62.32	-	-	-	T	154863184	G	T	154863184	3	4	338	1	0	0	0	0	1	0	0	0	7504	1319	46	4	577	4	HTR5A	7	154863184	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	4473687	154863184	4275479	66	36438										
DLC1	0	genome.wustl.edu	37	chr8	13357276	13357276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gcactagtgtttctgtgctgGcttccagagaaagaaactga	11	8	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	8	13357276	13357276	G	T	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.305	p.A102D	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	89	0	0	8	27	77.14	-	-	-	T	13357276	G	T	13357276	3	4	338	1	0	0	0	0	1	0	0	0	4586	1203	42	4	4434	4	DLC1	8	13357276	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		13357276	133006746	67	36439										
FLJ43860	0	genome.wustl.edu	37	chr8	142489405	142489405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	caggtggcgtgtggccgccaGccccaaggtcagagccatgc	15	14	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	8	142489405	142489405	G	A	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	silent	c.997	p.L333	0.280	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	14	0	0	1	12	92.31	-	-	-	A	142489405	G	A	142489405	2	1	338	1	0	0	0	0	0	0	0	1	5976	962	34	4		4	FLJ43860	8	142489405	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	129132129	142489405	3874617	68	36440										
SMARCA2	0	genome.wustl.edu	37	chr9	2058393	2058393	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ccaaagcagtggcaacttggCatgccaacactgaaagagag	11	10	0	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	2058393	2058393	C	G	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.1450	p.H484D	1.000	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	116	0	0	247	38	13.33	-	-	-	G	2058393	C	G	2058393	3	3	338	1	0	0	0	0	1	0	0	0	14858	710	25	4	1476	4	SMARCA2	9	2058393	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		2058393	139155038	69	36441										
KIF24	0	genome.wustl.edu	37	chr9	34269280	34269280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gtagactctgatttatttctGcaccttccatctttgtctgt	6	10	4	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	34269280	34269280	G	T	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	missense	c.1418	p.A473E	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	224	0	0	135	37	21.51	-	-	-	T	34269280	G	T	34269280	3	4	338	1	0	0	0	0	1	0	0	0	8344	1319	46	4	2712	4	KIF24	9	34269280	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	32210887	34269280	106944151	70	36442										
FANCG	0	genome.wustl.edu	37	chr9	35078182	35078182	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	taacaaggccaggtccccaaGacggtcagcactcaaccaga	9	14	2	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	35078182	35078182	G	C	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	missense	c.466	p.L156V	0.151	superfamily_Sig_transdc_His_kin_Hpt_dom	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	21	0	0	41	10	19.23	-	-	-	C	35078182	G	C	35078182	3	2	338	1	0	0	0	0	1	0	0	0	5714	942	33	2	1446	2	FANCG	9	35078182	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	808902	35078182	106135249	71	36443										
SLC28A3	0	genome.wustl.edu	37	chr9	86902989	86902989	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tccattttcatggcattcttGagggttattttaggtttttc	8	6	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	86902989	86902989	G	T	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	silent	c.1254	p.L418	0.930	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	362	0	0	40	145	78.38	-	-	-	T	86902989	G	T	86902989	2	4	338	1	0	0	0	0	0	0	0	1	14622	1277	45	2		2	SLC28A3	9	86902989	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	51824807	86902989	54310442	72	36444										
NR6A1	0	genome.wustl.edu	37	chr9	127316795	127316795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	catagtgcaagcctgtagcgCggtccccacaaatgagacag	11	12	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	127316795	127316795	C	T	SNP	NR6A1	ENST00000487099	human	ensembl	69_37n	-1	known	missense	c.197	p.R66H	0.999	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	31	0	0	37	23	38.33	-	-	-	T	127316795	C	T	127316795	3	4	338	1	0	0	0	0	1	0	0	0	10710	768	27	1	1277	1	NR6A1	9	127316795	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	40413806	127316795	13896636	73	36445										
FCN1	0	genome.wustl.edu	37	chr9	137808243	137808243	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttggccctggggccccgggCagccccgggcagcctcggag	17	16	0	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	137808243	137808243	C	A	SNP	FCN1	ENST00000371806	human	ensembl	69_37n	-1	known	silent	c.168	p.L56	0.992	pfam_Collagen	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN1	HGNC	ENSG00000085265	36	0	0	24	23	48.94	-	-	-	A	137808243	C	A	137808243	2	1	338	1	0	0	0	0	0	0	0	1	5837	697	25	4		4	FCN1	9	137808243	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	10491448	137808243	3405188	74	36446										
FAM166A	0	genome.wustl.edu	37	chr9	140142119	140142119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcccggctctcacccagggaCatagtgaggctccggcgtga	13	14	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	9	140142119	140142119	C	T	SNP	FAM166A	ENST00000344774	human	ensembl	69_37n	-1	known	missense	c.49	p.V17I	0.989	pfam_UPF0573/UPF0605	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163	153	0	0	36	142	79.78	-	-	-	T	140142119	C	T	140142119	3	4	338	1	0	0	0	0	1	0	0	0	5521	478	17	4	932	4	FAM166A	9	140142119	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	2333876	140142119	1071312	75	36447										
ANKRD30A	0	genome.wustl.edu	37	chr10	37419269	37419269	+	Missense_Mutation	SNP	T	T	A													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttgtcagtggtggcaaaacTgctgtcccatggtgcagtca							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	10	37419269	37419269	T	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	missense	c.305	p.L102Q	0.990	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	149	0	0	80	30	27.03	-	-	-	A	37419269	T	A	37419269	3	1	338	1	0	0	0	0	1	0	0	0	658	1580	55	5	315	5	ANKRD30A	10	37419269	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09		37419269	98115478	76	36448	295	2								
ANKRD30A	0	genome.wustl.edu	37	chr10	37419270	37419270	+	Silent	SNP	G	G	T													0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ttgtcagtggtggcaaaactGctgtcccatggtgcagtcat							TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	10	37419270	37419270	G	T	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	silent	c.306	p.L102	0.989	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	149	0	0	76	30	28.3	-	-	-	T	37419270	G	T	37419270	2	4	338	1	0	0	0	0	0	0	0	1	658	1306	46	4		4	ANKRD30A	10	37419270	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	1	37419270	98115477	77	36449	295	2								
LRIT2	0	genome.wustl.edu	37	chr10	85984799	85984799	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ataagggtgaattttcaattCtcacttgcttgaactcttca	6	8	4	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	10	85984799	85984799	C	T	SNP	LRIT2	ENST00000538192	human	ensembl	69_37n	-1	known	missense	c.182	p.R61K	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT2	HGNC	ENSG00000204033	67	0	0	4	22	84.62	-	-	-	T	85984799	C	T	85984799	3	4	338	1	0	0	0	0	1	0	0	0	9014	913	32	2	1478	2	LRIT2	10	85984799	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	48565529	85984799	49549948	78	36450										
HSPA12A	0	genome.wustl.edu	37	chr10	118434446	118434446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggtccctgtgagatccaggCggagcgtgccacacttcttc	12	13	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	10	118434446	118434446	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	missense	c.1874	p.R625H	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	11	0	0	5	27	84.38	-	-	-	T	118434446	C	T	118434446	3	4	338	1	0	0	0	0	1	0	0	0	7457	768	27	1	157	1	HSPA12A	10	118434446	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	32449647	118434446	17100301	79	36451										
LRRC27	0	genome.wustl.edu	37	chr10	134151186	134151186	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ttaaagcgcttccttctgggAttggagctcaccagtaagtt	10	9	2	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	10	134151186	134151186	A	G	SNP	LRRC27	ENST00000368613	human	ensembl	69_37n	1	known	missense	c.328	p.I110V	0.950	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814	93	0	0	35	39	52.7	-	-	-	G	134151186	A	G	134151186	3	3	338	1	0	0	0	0	1	0	0	0	9047	333	12	5	334	5	LRRC27	10	134151186	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	15716740	134151186	1383561	80	36452										
EXT2	0	genome.wustl.edu	37	chr11	44228488	44228488	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atcattatgctgacctctgaCgagctgcaatttggttatga	9	8	2	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	11	44228488	44228488	C	A	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.1740	p.D580E	0.008	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	226	0	0	205	49	19.29	-	-	-	A	44228488	C	A	44228488	3	1	338	1	0	0	0	0	1	0	0	0	5361	535	19	3	1875	3	EXT2	11	44228488	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		44228488	90778028	81	36453										
OR5B17	0	genome.wustl.edu	37	chr11	58125977	58125977	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcaactcactaatgtgtttcTcagagcaggtcagagtaatg	9	8	4	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	11	58125977	58125977	T	C	SNP	OR5B17	ENST00000357377	human	ensembl	69_37n	-1	known	missense	c.566	p.E189G	0.906	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786	61	0	0	21	46	68.66	-	-	-	C	58125977	T	C	58125977	3	2	338	1	0	0	0	0	1	0	0	0	11222	1551	54	5	380	5	OR5B17	11	58125977	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	13897489	58125977	76880539	82	36454										
RNF26	0	genome.wustl.edu	37	chr11	119206393	119206393	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	acggacgtagtggctgccttCctagcccacatttccagcag	10	14	0	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	11	119206393	119206393	C	T	SNP	RNF26	ENST00000311413	human	ensembl	69_37n	1	known	silent	c.561	p.F187	0.991	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456	39	0	0	7	70	90.91	-	-	-	T	119206393	C	T	119206393	2	4	338	1	0	0	0	0	0	0	0	1	13572	854	30	2		2	RNF26	11	119206393	Silent	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	61080416	119206393	15800123	83	36455										
CD9	0	genome.wustl.edu	37	chr12	6309673	6309673	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gttagccctcaccatgccggTcaaaggaggcaccaagtgca	11	13	2	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	12	6309673	6309673	T	A	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	missense	c.8	p.V3D	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	29	0	0	41	35	45.45	-	-	-	A	6309673	T	A	6309673	3	1	338	1	0	0	0	0	1	0	0	0	3075	1667	58	5	10	5	CD9	12	6309673	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09		6309673	127542222	84	36456										
PLEKHA5	0	genome.wustl.edu	37	chr12	19511185	19511185	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	agaccaagaagtgcagtggaAcagctctgtttggctgaaag	13	7	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	12	19511185	19511185	A	G	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	silent	c.2853	p.E951	0.047	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	120	0	0	93	56	37.09	-	-	-	G	19511185	A	G	19511185	2	3	338	1	0	0	0	0	0	0	0	1	12133	40	2	5		5	PLEKHA5	12	19511185	Silent	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	13201512	19511185	114340710	85	36457										
PRICKLE1	0	genome.wustl.edu	37	chr12	42853647	42853647	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttttgcccttgtgtcccttTttcttcttggattttgttgt	7	8	2	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	12	42853647	42853647	T	G	SNP	PRICKLE1	ENST00000345127	human	ensembl	69_37n	-1	known	missense	c.2460	p.K820N	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174	350	0	0	215	190	46.68	-	-	-	G	42853647	T	G	42853647	3	3	338	1	0	0	0	0	1	0	0	0	12567	1838	64	5	39	5	PRICKLE1	12	42853647	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	23342462	42853647	90998248	86	36458										
KRT2	0	genome.wustl.edu	37	chr12	53042093	53042093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	agaggatgacgttggtgtcaGtgacactctgatgtatctgg	14	6	3	4			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	12	53042093	53042093	G	A	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	missense	c.986	p.T329I	0.867	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	91	0	0	60	44	42.31	-	-	-	A	53042093	G	A	53042093	3	1	338	1	0	0	0	0	1	0	0	0	8510	1029	36	4	953	4	KRT2	12	53042093	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	10188446	53042093	80809802	87	36459										
GCN1L1	0	genome.wustl.edu	37	chr12	120565720	120565720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggccagcttcttcagggacCttcggttaacctcgttcagc	10	13	3	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	12	120565720	120565720	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.7949	p.R2650K	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	30	0	0	20	11	35.48	-	-	-	T	120565720	C	T	120565720	3	4	338	1	0	0	0	0	1	0	0	0	6349	681	24	4	70	4	GCN1L1	12	120565720	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	67523627	120565720	13286175	88	36460										
BRCA2	0	genome.wustl.edu	37	chr13	32972561	32972561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atttcagccaccaaggagttGtggcaccaaatacgaaacac	8	11	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	13	32972561	32972561	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.9911	p.C3304S	0.974	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	126	0	0	16	87	84.47	-	-	-	C	32972561	G	C	32972561	3	2	338	1	0	0	0	0	1	0	0	0	1507	1377	48	4	10013	4	BRCA2	13	32972561	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		32972561	82197317	89	36461										
FAM124A	0	genome.wustl.edu	37	chr13	51826195	51826195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	actgccctgtgaccagtgccCggtgcccaccgactcctccg	10	19	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	13	51826195	51826195	C	T	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	missense	c.800	p.P267L	0.998	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	11	0	0	4	12	75	-	-	-	T	51826195	C	T	51826195	3	4	338	1	0	0	0	0	1	0	0	0	5465	652	23	1	814	1	FAM124A	13	51826195	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	18853634	51826195	63343683	90	36462										
MYH6	0	genome.wustl.edu	37	chr14	23874978	23874978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ggtcctccttcacagtcaccGtctggagggggcgcataagc	13	13	3	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	14	23874978	23874978	G	A	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.203	p.T68M	1.000	pfam_Myosin_N	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	89	0	0	49	41	45.56	-	-	-	A	23874978	G	A	23874978	3	1	338	1	0	0	0	0	1	0	0	0	10110	1159	40	1	5760	1	MYH6	14	23874978	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		23874978	83474562	91	36463										
RYR3	0	genome.wustl.edu	37	chr15	34034597	34034597	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cctgaaaaattggaatacatCgtcaccaagtatgctgagca	8	9	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	15	34034597	34034597	C	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.7851	p.I2617M	0.203	pfam_Ryanodine_rcpt,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	157	0	0	18	32	64	-	-	-	G	34034597	C	G	34034597	3	3	338	1	0	0	0	0	1	0	0	0	13856	874	31	3	8057	3	RYR3	15	34034597	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		34034597	68496795	92	36464										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84639385	84639385	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcttgccagatgcctgagtgCagtagtaagtatgcggtgtc	13	8	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	15	84639385	84639385	C	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	nonsense	c.2640	p.C880*	0.830	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	94	0	0	117	42	26.42	-	-	-	A	84639385	C	A	84639385	4	1	338	1	0	0	0	0	0	1	0	0	276	718	25	4	2714	4	ADAMTSL3	15	84639385	Nonsense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	50604788	84639385	17892007	93	36465										
LRRK1	0	genome.wustl.edu	37	chr15	101567954	101567954	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ggcagctggagcagctggtgGagcagacgcccgacaacgac	16	12	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	15	101567954	101567954	G	T	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	nonsense	c.2638	p.E880*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	15	0	0	64	13	16.67	-	-	-	T	101567954	G	T	101567954	4	4	338	1	0	0	0	0	0	1	0	0	9098	1175	41	2	2708	2	LRRK1	15	101567954	Nonsense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	16928569	101567954	963438	94	36466										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	167	0	0	26	142	84.02	-	-	-	A	7578212	G	A	7578212	4	1	338	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09		7578212	73616998	95	36467										
STAC2	0	genome.wustl.edu	37	chr17	37369302	37369302	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ttgttcccggagaagggttgGcagcagcgccaaacattctc	12	11	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	37369302	37369302	G	C	SNP	STAC2	ENST00000333461	human	ensembl	69_37n	-1	known	missense	c.1077	p.C359W	0.994	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC2	HGNC	ENSG00000141750	30	0	0	44	11	20	-	-	-	C	37369302	G	C	37369302	3	2	338	1	0	0	0	0	1	0	0	0	15331	1195	42	4	166	4	STAC2	17	37369302	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	29791090	37369302	43825908	96	36468										
CCR7	0	genome.wustl.edu	37	chr17	38711515	38711515	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gagagagcatcgcatcgcttGctcactgctgctcctctgga	11	13	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	38711515	38711515	G	A	SNP	CCR7	ENST00000246657	human	ensembl	69_37n	-1	known	nonsense	c.616	p.Q206*	0.062	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Chemokine_CCR7,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Chemokine_CCR7,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCR11,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR7	HGNC	ENSG00000126353	30	0	0	80	29	26.61	-	-	-	A	38711515	G	A	38711515	4	1	338	1	0	0	0	0	0	1	0	0	2975	1328	46	4	524	4	CCR7	17	38711515	Nonsense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	1342213	38711515	42483695	97	36469										
LRRC37A	0	genome.wustl.edu	37	chr17	44415042	44415042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	attgttattcttatcccaggGacagcgaagccccaacggag	10	11	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	44415042	44415042	G	T	SNP	LRRC37A	ENST00000320254	human	ensembl	69_37n	1	known	missense	c.5056	p.D1686Y	0.122	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	65	0	0	78	22	21.78	-	-	-	T	44415042	G	T	44415042	3	4	338	1	0	0	0	0	1	0	0	0	9057	1188	41	2	5110	2	LRRC37A	17	44415042	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	5703527	44415042	36780168	98	36470										
APPBP2	0	genome.wustl.edu	37	chr17	58538075	58538075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ggtggacataagaagagtagGccaaatcttcatgagctgtt	12	6	2	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	58538075	58538075	G	A	SNP	APPBP2	ENST00000083182	human	ensembl	69_37n	-1	known	missense	c.1010	p.A337V	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	APPBP2	HGNC	ENSG00000062725	121	0	0	121	64	34.41	-	-	-	A	58538075	G	A	58538075	3	1	338	1	0	0	0	0	1	0	0	0	818	1203	42	4	767	4	APPBP2	17	58538075	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	14123033	58538075	22657135	99	36471										
MED13	0	genome.wustl.edu	37	chr17	60087928	60087928	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tactctgtaactgatgttacActttcctgtccaaaaggtcc	6	11	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	60087928	60087928	A	T	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.1950	p.S650R	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	198	0	0	96	45	31.91	-	-	-	T	60087928	A	T	60087928	3	4	338	1	0	0	0	0	1	0	0	0	9501	156	6	5	4662	5	MED13	17	60087928	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	1549853	60087928	21107282	100	36472										
HELZ	0	genome.wustl.edu	37	chr17	65082989	65082989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcctgctggatccattgcacGgaatgttctgataaggagta	11	8	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	65082989	65082989	G	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.5450	p.P1817Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	150	0	0	122	58	32.22	-	-	-	T	65082989	G	T	65082989	3	4	338	1	0	0	0	0	1	0	0	0	7100	1116	39	3	386	3	HELZ	17	65082989	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	4995061	65082989	16112221	101	36473										
CDR2L	0	genome.wustl.edu	37	chr17	72998158	72998158	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgtccaccaccccgcccccaGgctgacggagaccattgagc	10	18	0	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	72998158	72998158	G	A	SNP	CDR2L	ENST00000337231	human	ensembl	69_37n	1	known	splice_site	c.342-1	e4-1	1.000	-	-	-	no_errors	CDR2L	HGNC	ENSG00000109089	12	0	0	26	12	31.58	-	-	-	A	72998158	G	A	72998158	5	1	338	1	0	0	0	0	0	0	1	0	3202	1014	35	4	355	4	CDR2L	17	72998158	Splice_Site	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	7915169	72998158	8197052	102	36474										
RPTOR	0	genome.wustl.edu	37	chr17	78811786	78811786	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cgacgatcatcgaggaaggcActgcgtttcgggtgagtccc	14	11	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	17	78811786	78811786	A	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.1201	p.T401S	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	20	0	0	32	13	28.89	-	-	-	T	78811786	A	T	78811786	3	4	338	1	0	0	0	0	1	0	0	0	13751	159	6	5	1239	5	RPTOR	17	78811786	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	5813628	78811786	2383424	103	36475										
MYOM1	0	genome.wustl.edu	37	chr18	3094191	3094191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gccttcaaaaatttccttctCgttaaatatgtagttgactt	5	8	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	18	3094191	3094191	C	G	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.3841	p.E1281Q	1.000	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	198	0	0	171	45	20.83	-	-	-	G	3094191	C	G	3094191	3	3	338	1	0	0	0	0	1	0	0	0	10163	893	31	3	1268	3	MYOM1	18	3094191	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		3094191	74983057	104	36476										
EPB41L3	0	genome.wustl.edu	37	chr18	5445173	5445173	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	catctcgatacgtaagcccaAagtagtctttctctagcaag	7	11	3	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	18	5445173	5445173	A	G	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.452	p.F151S	1.000	pirsf_Band_41_protein,pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	236	1	0.42	223	45	16.61	-	-	-	G	5445173	A	G	5445173	3	3	338	1	0	0	0	0	1	0	0	0	5191	14	1	5	2887	5	EPB41L3	18	5445173	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	2350982	5445173	72632075	105	36477										
MIB1	0	genome.wustl.edu	37	chr18	19438538	19438538	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	attccagtattacaaaaggaCaaggataataccaatgtcaa	6	7	1	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	18	19438538	19438538	C	G	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.2811	p.D937E	1.000	NULL	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	161	0	0	100	23	18.55	-	-	-	G	19438538	C	G	19438538	3	3	338	1	0	0	0	0	1	0	0	0	9637	477	17	4	2889	4	MIB1	18	19438538	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	13993365	19438538	58638710	106	36478										
DCC	0	genome.wustl.edu	37	chr18	50918216	50918216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctgaggtgcgactttacaccGtccggtggagaaccagcttt	12	11	0	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	18	50918216	50918216	G	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.2647	p.V883I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	85	0	0	80	33	29.2	-	-	-	A	50918216	G	A	50918216	3	1	338	1	0	0	0	0	1	0	0	0	4313	1145	40	1	2713	1	DCC	18	50918216	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	31479678	50918216	27159032	107	36479										
MAP2K2	0	genome.wustl.edu	37	chr19	4117473	4117473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gactttggtgaccaccccgcCgttgcccgcgcccagctctg	11	18	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	4117473	4117473	C	T	SNP	MAP2K2	ENST00000262948	human	ensembl	69_37n	-1	known	missense	c.247	p.G83S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934	48	0	0	37	32	45.71	-	-	-	T	4117473	C	T	4117473	3	4	338	1	0	0	0	0	1	0	0	0	9308	652	23	1	995	1	MAP2K2	19	4117473	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		4117473	55011510	108	36480										
MCOLN1	0	genome.wustl.edu	37	chr19	7589918	7589918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cttcaccggcccctccgacaCccccagaagaggaagacctt	8	18	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	7589918	7589918	C	A	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.103	p.P35T	0.015	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	15	0	0	16	9	36	-	-	-	A	7589918	C	A	7589918	3	1	338	1	0	0	0	0	1	0	0	0	9466	507	18	4	109	4	MCOLN1	19	7589918	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	3472445	7589918	51539065	109	36481										
MUC16	0	genome.wustl.edu	37	chr19	9050021	9050021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggtagccaatgaggatgtcGtttctggaacatcagggaaa	13	6	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	9050021	9050021	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.31610	p.T10537M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	391	0	0	76	706	89.94	-	-	-	A	9050021	G	A	9050021	3	1	338	1	0	0	0	0	1	0	0	0	10045	1145	40	1	12233	1	MUC16	19	9050021	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	1460103	9050021	50078962	110	36482										
MUC16	0	genome.wustl.edu	37	chr19	9087467	9087467	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ggggagagtgattgtggtctGctcactgggagcaaggacca	17	7	2	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	9087467	9087467	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4348	p.Q1450K	0.200	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	103	0	0	97	71	42.26	-	-	-	T	9087467	G	T	9087467	3	4	338	1	0	0	0	0	1	0	0	0	10045	1328	46	4	39511	4	MUC16	19	9087467	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	37446	9087467	50041516	111	36483										
FCGBP	0	genome.wustl.edu	37	chr19	40383993	40383993	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tggcccagcagccgcagccgTtgttgaggggaacacagcgg	16	12	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	40383993	40383993	T	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.9617	p.N3206I	0.000	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	26	0	0	47	10	16.95	-	-	-	A	40383993	T	A	40383993	3	1	338	1	0	0	0	0	1	0	0	0	5824	1725	60	5	6664	5	FCGBP	19	40383993	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	31296526	40383993	18744990	112	36484										
SYNGR4	0	genome.wustl.edu	37	chr19	48879377	48879377	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctggcattccaggacctccgAaatgatgctccagtccctta	8	14	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	48879377	48879377	A	T	SNP	SYNGR4	ENST00000344846	human	ensembl	69_37n	1	known	silent	c.507	p.R169	0.000	pirsf_Synaptogyrin	pfam_MARVEL-like_dom,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467	33	0	0	7	65	90.28	-	-	-	T	48879377	A	T	48879377	2	4	338	1	0	0	0	0	0	0	0	1	15543	233	9	5		5	SYNGR4	19	48879377	Silent	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	8495384	48879377	10249606	113	36485										
AP2A1	0	genome.wustl.edu	37	chr19	50309000	50309000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	agcccaccgagatggcggccCaggatttcttccagcgctgg	13	14	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	50309000	50309000	C	G	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	missense	c.2617	p.Q873E	0.998	pfam_Clathrin_a-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	16	0	0	7	28	80	-	-	-	G	50309000	C	G	50309000	3	3	338	1	0	0	0	0	1	0	0	0	740	595	21	4	2699	4	AP2A1	19	50309000	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	1429623	50309000	8819983	114	36486										
MYH14	0	genome.wustl.edu	37	chr19	50805047	50805047	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gtgaggaggatgctggggccCgtgcccgccacaagatgacc	16	12	0	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	50805047	50805047	C	A	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.5599	p.R1867S	0.997	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	10	0	0	33	17	34	-	-	-	A	50805047	C	A	50805047	3	1	338	1	0	0	0	0	1	0	0	0	10105	652	23	3	5753	3	MYH14	19	50805047	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	496047	50805047	8323936	115	36487										
SIGLEC6	0	genome.wustl.edu	37	chr19	52034507	52034507	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tgcagcattgtccctcctccGggcatctctgatgctcaggg	11	14	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	52034507	52034507	G	T	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	silent	c.334	p.R112	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	85	0	0	6	92	93.88	-	-	-	T	52034507	G	T	52034507	2	4	338	1	0	0	0	0	0	0	0	1	14401	1115	39	3		3	SIGLEC6	19	52034507	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	1229460	52034507	7094476	116	36488										
ZNF761	0	genome.wustl.edu	37	chr19	53959355	53959355	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atgagtgcggcaagacctttAgttggaagtcatcccttacc	10	10	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	53959355	53959355	A	T	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	94	0	0	38	60	61.22	-	-	-	T	53959355	A	T	53959355	1	4	338	0	1	0	0	0	0	0	0	0	18230	420	15	5		5	ZNF761	19	53959355	RNA	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	1924848	53959355	5169628	117	36489										
ZNF761	0	genome.wustl.edu	37	chr19	53959652	53959652	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	atcgtagacttcataccggaGagaaaccttacaaatgtgaa	8	8	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	53959652	53959652	G	A	SNP	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	182	0	0	136	43	24.02	-	-	-	A	53959652	G	A	53959652	1	1	338	0	1	0	0	0	0	0	0	0	18230	943	33	2		2	ZNF761	19	53959652	RNA	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	297	53959652	5169331	118	36490										
NLRP8	0	genome.wustl.edu	37	chr19	56485096	56485096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cagagtaagatgctgacccaCctgagcttggcagaaaacgc	11	11	0	5			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	19	56485096	56485096	C	G	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.2613	p.H871Q	0.773	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	50	0	0	7	66	90.41	-	-	-	G	56485096	C	G	56485096	3	3	338	1	0	0	0	0	1	0	0	0	10555	506	18	4	2639	4	NLRP8	19	56485096	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	2525444	56485096	2643887	119	36491										
ESF1	0	genome.wustl.edu	37	chr20	13698067	13698067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcatgagctgctttttcttcTttttgctcagattctggtgc	8	9	5	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	20	13698067	13698067	T	G	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	missense	c.2210	p.K737T	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	594	0	0	222	130	36.83	-	-	-	G	13698067	T	G	13698067	3	3	338	1	0	0	0	0	1	0	0	0	5288	1609	56	5	353	5	ESF1	20	13698067	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09		13698067	49327453	120	36492										
MYBL2	0	genome.wustl.edu	37	chr20	42343796	42343796	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gacaactgccccttcaaactCttccagcctcaccctgtcag	5	18	4	0			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	20	42343796	42343796	C	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.1847	p.S616Y	0.039	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	113	0	0	15	42	73.68	-	-	-	A	42343796	C	A	42343796	3	1	338	1	0	0	0	0	1	0	0	0	10082	913	32	2	1897	2	MYBL2	20	42343796	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09	28645729	42343796	20681724	121	36493										
LSM14B	0	genome.wustl.edu	37	chr20	60705737	60705737	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aaagaatttaagaagaaactGaattttaaaggtttggctca	8	3	1	4			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	20	60705737	60705737	G	T	SNP	LSM14B	ENST00000253001	human	ensembl	69_37n	1	known	silent	c.825	p.L275	1.000	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657	118	0	0	81	26	24.3	-	-	-	T	60705737	G	T	60705737	2	4	338	1	0	0	0	0	0	0	0	1	9121	1277	45	2		2	LSM14B	20	60705737	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	18361941	60705737	2319783	122	36494										
BID	0	genome.wustl.edu	37	chr22	18220856	18220856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctgttgtgtgaaagacatcaCggagcaaggacggcgtgtga	15	7	1	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	22	18220856	18220856	C	T	SNP	BID	ENST00000317361	human	ensembl	69_37n	-1	known	missense	c.641	p.R214H	0.005	pfam_BID	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475	84	0	0	17	87	81.31	-	-	-	T	18220856	C	T	18220856	3	4	338	1	0	0	0	0	1	0	0	0	1435	536	19	1	92	1	BID	22	18220856	Missense_Mutation	SNP	C	TCGA-AO-A124-01A-11D-A10M-09		18220856	33083710	123	36495										
AP1B1	0	genome.wustl.edu	37	chr22	29737711	29737711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gtggacagcaggcgccagtaGatgtagccacggtcccgcag	15	12	0	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	22	29737711	29737711	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.1575	p.I525	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	23	0	0	2	24	92.31	-	-	-	A	29737711	G	A	29737711	2	1	338	1	0	0	0	0	0	0	0	1	732	932	33	2		2	AP1B1	22	29737711	Silent	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	11516855	29737711	21566855	124	36496										
CXorf58	0	genome.wustl.edu	37	chrX	23956748	23956748	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	ctgggtcgtcgatccaagcaAgctcaaatgaaagttgaaaa	10	8	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	23956748	23956748	A	T	SNP	CXorf58	ENST00000379211	human	ensembl	69_37n	1	known	missense	c.870	p.Q290H	0.070	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182	180	0	0	15	92	85.98	-	-	-	T	23956748	A	T	23956748	3	4	338	1	0	0	0	0	1	0	0	0	4145	69	3	5	896	5	CXorf58	23	23956748	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09		23956748	131313812	125	36497										
PCYT1B	0	genome.wustl.edu	37	chrX	24608286	24608286	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tttgtgggtgagatcatcacTgcaaactaaaacaggcaaat	9	7	2	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	24608286	24608286	T	C	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.340	p.S114G	1.000	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	106	0	0	12	60	83.33	-	-	-	C	24608286	T	C	24608286	3	2	338	1	0	0	0	0	1	0	0	0	11684	1580	55	5	826	5	PCYT1B	23	24608286	Missense_Mutation	SNP	T	TCGA-AO-A124-01A-11D-A10M-09	651538	24608286	130662274	126	36498										
TAF1	0	genome.wustl.edu	37	chrX	70604808	70604808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	cttatagaaacctggaaaagAtcctggagcaccagattgta	9	8	0	3			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	70604808	70604808	A	G	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.2132	p.D711G	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	300	0	0	23	116	83.45	-	-	-	G	70604808	A	G	70604808	3	3	338	1	0	0	0	0	1	0	0	0	15605	333	12	5	2249	5	TAF1	23	70604808	Missense_Mutation	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	45996522	70604808	84665752	127	36499										
CYLC1	0	genome.wustl.edu	37	chrX	83129529	83129529	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	gtagagttcctccatcaagaGaaaaaccaccactccctgct	6	14	1	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	83129529	83129529	G	C	SNP	CYLC1	ENST00000329312	human	ensembl	69_37n	1	known	missense	c.1813	p.E605Q	0.998	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035	107	0	0	27	19	41.3	-	-	-	C	83129529	G	C	83129529	3	2	338	1	0	0	0	0	1	0	0	0	4172	943	33	2	1827	2	CYLC1	23	83129529	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	12524721	83129529	72141031	128	36500										
AKAP14	0	genome.wustl.edu	37	chrX	119037310	119037310	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	aattgactcaagtagctctaGctctggttgaggatgtcatc	10	8	4	2			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	119037310	119037310	G	C	SNP	AKAP14	ENST00000371431	human	ensembl	69_37n	1	known	missense	c.124	p.A42P	0.000	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471	171	1	0.58	25	108	81.2	-	-	-	C	119037310	G	C	119037310	3	2	338	1	0	0	0	0	1	0	0	0	450	971	34	4	126	4	AKAP14	23	119037310	Missense_Mutation	SNP	G	TCGA-AO-A124-01A-11D-A10M-09	35907781	119037310	36233250	129	36501										
ODZ1	0	genome.wustl.edu	37	chrX	123630946	123630946	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	8	0.953986987641084	0.876636082967344	0.581247837619652	1.05542370515147	0.214759287023155	0.803125881152178	0	tcgccaacatacacactgccAtcagggccagaagctaaggc	9	14	1	1			TCGA-AO-A124-01A-11D-A10M-09	TCGA-AO-A124-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	987528ac-437a-4eb8-a335-4f2076d5c006	0c4d979c-75f8-49bd-8e65-f980cbeae267	X	123630946	123630946	A	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.3615	p.D1205	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	175	0	0	75	47	38.52	-	-	-	G	123630946	A	G	123630946	2	3	338	1	0	0	0	0	0	0	0	1	10907	214	8	5		5	ODZ1	23	123630946	Silent	SNP	A	TCGA-AO-A124-01A-11D-A10M-09	4593636	123630946	31639614	130	36502										
BAI2	0	genome.wustl.edu	37	chr1	32210310	32210310	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ggccactgggttttcactttCggttcctcttccggctcctc	9	15	2	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	32210310	32210310	C	T	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	silent	c.861	p.P287	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	96	0	0	158	18	10.17	-	-	-	T	32210310	C	T	32210310	2	4	339	1	0	0	0	0	0	0	0	1	1303	871	31	1		1	BAI2	1	32210310	Silent	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		32210310	217040311	1	36503										
CCT3	0	genome.wustl.edu	37	chr1	156305652	156305652	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tgtttccagattgaacttttCttccggattcacgctttgtg	8	9	2	2			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	156305652	156305652	C	G	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	missense	c.59	p.R20T	1.000	superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	257	0	0	490	132	21.19	-	-	-	G	156305652	C	G	156305652	3	3	339	1	0	0	0	0	1	0	0	0	2983	913	32	2	1630	2	CCT3	1	156305652	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	124095342	156305652	92944969	2	36504										
BCAN	0	genome.wustl.edu	37	chr1	156622582	156622582	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tggaggccccctctgaagatAattctggaagaactgcccca	10	12	2	3			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	156622582	156622582	A	G	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.1840	p.N614D	0.689	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	20	0	0	44	23	34.33	-	-	-	G	156622582	A	G	156622582	3	3	339	1	0	0	0	0	1	0	0	0	1349	362	13	5	1866	5	BCAN	1	156622582	Missense_Mutation	SNP	A	TCGA-AO-A125-01A-11D-A10M-09	316930	156622582	92628039	3	36505										
FCRL3	0	genome.wustl.edu	37	chr1	157667171	157667171	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	gtcatgggactcccctctatGggcgtggaagagctggctct	14	11	3	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	157667171	157667171	G	T	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	silent	c.603	p.P201	0.002	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	62	0	0	25	29	53.7	-	-	-	T	157667171	G	T	157667171	2	4	339	1	0	0	0	0	0	0	0	1	5842	1335	47	4		4	FCRL3	1	157667171	Silent	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	1044589	157667171	91583450	4	36506										
ASPM	0	genome.wustl.edu	37	chr1	197062229	197062230	+	Frame_Shift_Ins	INS	-	-	A													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	agtgcttgtaggataactgtINSagattttttaaattcaatat							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	197062229	197062230	-	A	INS	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.9247_9246	p.T3082fs	0.055:0.074	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	135	0	0	27	4	12.9	-	-	-	A	197062230	-	A	197062229	7	5	339	1	0	1	1	0	0	0	0	0	1060	1638	57	0	1218	0	ASPM	1	197062229	Frame_Shift_Ins	INS	-	TCGA-AO-A125-01A-11D-A10M-09	39395058	197062229	52188392	5	36507										
ACTN2	0	genome.wustl.edu	37	chr1	236894614	236894614	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ctaaaatgttggatgctgaaGgtgagatgaaaattgtgttt	12	2	0	3			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	236894614	236894614	G	T	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.697	p.D233Y	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	187	0	0	192	64	25	-	-	-	T	236894614	G	T	236894614	3	4	339	1	0	0	0	0	1	0	0	0	205	1014	35	4	723	4	ACTN2	1	236894614	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	39832385	236894614	12356007	6	36508										
KIF26B	0	genome.wustl.edu	37	chr1	245861431	245861431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ctcagagacggaggcttatcCcagcactatccctggacacc	9	15	1	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	1	245861431	245861431	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.5848	p.P1950S	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	96	0	0	238	52	17.87	-	-	-	T	245861431	C	T	245861431	3	4	339	1	0	0	0	0	1	0	0	0	8347	623	22	4	5898	4	KIF26B	1	245861431	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	8966817	245861431	3389190	7	36509										
TTN	0	genome.wustl.edu	37	chr2	179514309	179514310	+	Frame_Shift_Ins	INS	-	-	TG													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ctggtgtttctggcttcttaINSacagttgggaccttcttcac							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	2	179514309	179514310	-	TG	INS	TTN	ENST00000589042	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.39945_39944	p.K13316fs	0.948:0.886	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	9	0	0	2	2	50	-	-	-	TG	179514310	-	TG	179514309	7	5	339	1	0	1	1	0	0	0	0	0	16832	377	13	0		0	TTN	2	179514309	Frame_Shift_Ins	INS	-	TCGA-AO-A125-01A-11D-A10M-09		179514309	63685064	8	36510										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	126	0	0	25	17	40.48	-	-	-	A	178936091	G	A	178936091	3	1	339	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09		178936091	19086339	9	36511										
OTOP1	0	genome.wustl.edu	37	chr4	4199797	4199797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	cagtgcacagagttgggggcGtgcagttacactgcggtgtg	17	8	0	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	4	4199797	4199797	G	A	SNP	OTOP1	ENST00000296358	human	ensembl	69_37n	-1	known	missense	c.764	p.T255M	0.710	NULL	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982	38	0	0	15	17	53.12	-	-	-	A	4199797	G	A	4199797	3	1	339	1	0	0	0	0	1	0	0	0	11378	1145	40	1	1082	1	OTOP1	4	4199797	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09		4199797	186954479	10	36512										
CDH10	0	genome.wustl.edu	37	chr5	24535931	24535931	+	Frame_Shift_Del	DEL	C	C	-													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tgacttgcaccacagaagtaCctgaagtatccaaattcagc							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	5	24535931	24535931	C	-	DEL	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	frame_shift_del	c.527	p.G176fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	90	0	0	14	2	12.5	-	-	-	-	24535931	C	-	24535931	7	5	339	1	0	1	0	1	0	0	0	0	3125	521	18	0	1875	0	CDH10	5	24535931	Frame_Shift_Del	DEL	C	TCGA-AO-A125-01A-11D-A10M-09		24535931	156379329	11	36513										
RASGRF2	0	genome.wustl.edu	37	chr5	80390150	80390150	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tctctaatagactgcacattGattgaggagccagatgcaag	10	8	1	4			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	5	80390150	80390150	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	silent	c.1587	p.L529	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	160	0	0	100	47	31.97	-	-	-	A	80390150	G	A	80390150	2	1	339	1	0	0	0	0	0	0	0	1	13156	1281	45	2		2	RASGRF2	5	80390150	Silent	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	55854219	80390150	100525110	12	36514										
PCDHA6	0	genome.wustl.edu	37	chr5	140208763	140208763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ccttgcctgtacgtgaagacGctcaatttggtactgtcatc	9	11	2	2			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	5	140208763	140208763	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.1087	p.A363T	0.909	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	75	0	0	65	56	45.9	-	-	-	A	140208763	G	A	140208763	3	1	339	1	0	0	0	0	1	0	0	0	11601	1087	38	1	1089	1	PCDHA6	5	140208763	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	59818613	140208763	40706497	13	36515										
HK3	0	genome.wustl.edu	37	chr5	176308376	176308376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ttccaggccccggttctcccGgatcttctccaccacggcag	9	18	3	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	5	176308376	176308376	G	A	SNP	HK3	ENST00000292432	human	ensembl	69_37n	-1	known	missense	c.2554	p.R852W	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	57	0	0	101	13	11.4	-	-	-	A	176308376	G	A	176308376	3	1	339	1	0	0	0	0	1	0	0	0	7243	1115	39	1	225	1	HK3	5	176308376	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	36099613	176308376	4606884	14	36516										
PRDM1	0	genome.wustl.edu	37	chr6	106553787	106553787	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	aacgtttgcgccaagactttCggccagctctccaatctgaa	8	13	2	2			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	6	106553787	106553787	C	T	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	silent	c.1752	p.F584	0.932	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	12	0	0	13	13	50	-	-	-	T	106553787	C	T	106553787	2	4	339	1	0	0	0	0	0	0	0	1	12531	883	31	1		1	PRDM1	6	106553787	Silent	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		106553787	64561280	15	36517										
SAP25	0	genome.wustl.edu	37	chr7	100170189	100170189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ggcagcagtttcagggagccCatcatctgaggagagagaat	14	8	3	3			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	7	100170189	100170189	C	T	SNP	SAP25	ENST00000538735	human	ensembl	69_37n	-1	known	missense	c.321	p.M107I	0.187	NULL	NULL	-	no_errors	SAP25	HGNC	ENSG00000205307	23	0	0	35	16	31.37	-	-	-	T	100170189	C	T	100170189	3	4	339	1	0	0	0	0	1	0	0	0	13919	594	21	4	282	4	SAP25	7	100170189	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		100170189	58968474	16	36518										
CHRM2	0	genome.wustl.edu	37	chr7	136700083	136700084	+	Frame_Shift_Ins	INS	-	-	G													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ctttcatcctctgggctccaINSgccattctcttctggcagtt							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	7	136700083	136700084	-	G	INS	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	frame_shift_ins	c.471_472	p.A157fs	0.201:1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	53	0	0	21	4	16	-	-	-	G	136700084	-	G	136700083	7	5	339	1	0	1	1	0	0	0	0	0	3406	175	7	0	473	0	CHRM2	7	136700083	Frame_Shift_Ins	INS	-	TCGA-AO-A125-01A-11D-A10M-09	36529894	136700083	22438580	17	36519										
MLL3	0	genome.wustl.edu	37	chr7	151880094	151880094	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ttcctgttcatgttctgattCtctttgctttaaaggatctt	6	8	4	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	7	151880094	151880094	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5230	p.E1744*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	290	0	0	50	101	66.89	-	-	-	A	151880094	C	A	151880094	4	1	339	1	0	0	0	0	0	1	0	0	9693	922	32	2	9605	2	MLL3	7	151880094	Nonsense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	15180011	151880094	7258569	18	36520										
CSMD1	0	genome.wustl.edu	37	chr8	3855433	3855433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	cccgggacttaccatatggaTggagcttccgtgccactgat	11	12	0	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	8	3855433	3855433	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	silent	c.810	p.P270	0.009	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	73	0	0	22	11	33.33	-	-	-	C	3855433	T	C	3855433	2	2	339	1	0	0	0	0	0	0	0	1	3976	1451	51	5		5	CSMD1	8	3855433	Silent	SNP	T	TCGA-AO-A125-01A-11D-A10M-09		3855433	142508589	19	36521										
TEX15	0	genome.wustl.edu	37	chr8	30701516	30701516	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	gtttgcaattattccacaggTtttggtctaccaacagttct	7	9	2	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	8	30701516	30701516	T	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.5018	p.N1673I	0.817	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	137	0	0	25	38	60.32	-	-	-	A	30701516	T	A	30701516	3	1	339	1	0	0	0	0	1	0	0	0	15874	1725	60	5	3367	5	TEX15	8	30701516	Missense_Mutation	SNP	T	TCGA-AO-A125-01A-11D-A10M-09	26846083	30701516	115662506	20	36522										
JAK2	0	genome.wustl.edu	37	chr9	5077523	5077523	+	Frame_Shift_Del	DEL	A	A	-													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	aaaaagaataaaaattgtatAaatatattatggaaacttga							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	9	5077523	5077523	A	-	DEL	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	frame_shift_del	c.1935	p.N646fs	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	45	0	0	13	2	13.33	-	-	-	-	5077523	A	-	5077523	7	5	339	1	0	1	0	1	0	0	0	0	7992	352	13	0	1985	0	JAK2	9	5077523	Frame_Shift_Del	DEL	A	TCGA-AO-A125-01A-11D-A10M-09		5077523	136135908	21	36523										
ECM2	0	genome.wustl.edu	37	chr9	95277299	95277301	+	In_Frame_Del	DEL	TCT	TCT	-													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tctctctcttttgctctgtaTcttcttctttcacttcttca							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	9	95277299	95277301	TCT	-	DEL	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	in_frame_del	c.668_666	p.E222in_frame_del	0.015:0.011:0.071	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	152	0	0	127	79	38.16	-	-	-	-	95277301	TCT	-	95277299	7	5	339	1	0	1	0	1	0	0	0	0	4933	1435	50	0	1459	0	ECM2	9	95277299	In_Frame_Del	DEL	TCT	TCGA-AO-A125-01A-11D-A10M-09	90199776	95277299	45936132	22	36524										
IREB2	0	genome.wustl.edu	37	chr15	78758680	78758680	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	caggaaagctctctccagttAaagtgcagcctaagaagctt	9	10	1	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	15	78758680	78758680	A	G	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.478	p.K160E	0.004	superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	149	0	0	57	33	36.26	-	-	-	G	78758680	A	G	78758680	3	3	339	1	0	0	0	0	1	0	0	0	7880	363	13	5	496	5	IREB2	15	78758680	Missense_Mutation	SNP	A	TCGA-AO-A125-01A-11D-A10M-09		78758680	23772712	23	36525										
BTBD1	0	genome.wustl.edu	37	chr15	83710593	83710593	+	Missense_Mutation	SNP	G	G	A													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	attgttgtctctgacattctGcttctgcccagcgtacaaca							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	15	83710593	83710593	G	A	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	missense	c.749	p.A250V	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	210	0	0	139	116	44.96	-	-	-	A	83710593	G	A	83710593	3	1	339	1	0	0	0	0	1	0	0	0	1545	1319	46	4	719	4	BTBD1	15	83710593	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	4951913	83710593	18820799	24	36526	296	2								
BTBD1	0	genome.wustl.edu	37	chr15	83710594	83710594	+	Missense_Mutation	SNP	C	C	T													0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ttgttgtctctgacattctgCttctgcccagcgtacaacag							TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	15	83710594	83710594	C	T	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	missense	c.748	p.A250T	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	213	0	0	143	113	43.97	-	-	-	T	83710594	C	T	83710594	3	4	339	1	0	0	0	0	1	0	0	0	1545	797	28	4	720	4	BTBD1	15	83710594	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	1	83710594	18820798	25	36527	296	2								
EARS2	0	genome.wustl.edu	37	chr16	23535677	23535677	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ttagggcgatctccactgccCgaaacatcctctccctagct	7	16	2	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	16	23535677	23535677	C	T	SNP	EARS2	ENST00000564987	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EARS2	HGNC	ENSG00000103356	119	0	0	122	41	25	-	-	-	T	23535677	C	T	23535677	1	4	339	0	1	0	0	0	0	0	0	0	4913	667	23	1		1	EARS2	16	23535677	RNA	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		23535677	66819076	26	36528										
HYDIN	0	genome.wustl.edu	37	chr16	71008518	71008518	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	gatcttgatgatgtgggttcGgacttcgccaaggatgatgt	14	6	1	3			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	16	71008518	71008518	G	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	nonsense	c.4825	p.R1609*	0.048	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	77	0	0	1	26	96.3	-	-	-	A	71008518	G	A	71008518	4	1	339	1	0	0	0	0	0	1	0	0	7521	1124	39	1	10757	1	HYDIN	16	71008518	Nonsense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	47472841	71008518	19346235	27	36529										
PRPSAP2	0	genome.wustl.edu	37	chr17	18785979	18785979	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	gagcatctcccttcttattaCagtatattcaagaagaggtg	8	8	3	2			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	17	18785979	18785979	C	T	SNP	PRPSAP2	ENST00000268835	human	ensembl	69_37n	1	known	nonsense	c.511	p.Q171*	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127	202	1	0.49	54	91	62.33	-	-	-	T	18785979	C	T	18785979	4	4	339	1	0	0	0	0	0	1	0	0	12663	479	17	4	529	4	PRPSAP2	17	18785979	Nonsense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		18785979	62409231	28	36530										
MRPL45	0	genome.wustl.edu	37	chr17	36453190	36453190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	agggttctcttgtttatcgaGgtttttgggctggtggtttc	14	5	1	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	17	36453190	36453190	G	C	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	missense	c.41	p.R14T	0.616	NULL	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	222	0	0	200	153	43.34	-	-	-	C	36453190	G	C	36453190	3	2	339	1	0	0	0	0	1	0	0	0	9881	1000	35	4		4	MRPL45	17	36453190	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	17667211	36453190	44742020	29	36531										
FASN	0	genome.wustl.edu	37	chr17	80054315	80054315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	catgccggcaatcaccacctCctccatggctgctctgcagg	9	17	2	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	17	80054315	80054315	C	G	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.7	p.E3Q	1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	28	0	0	32	13	28.89	-	-	-	G	80054315	C	G	80054315	3	3	339	1	0	0	0	0	1	0	0	0	5729	864	30	2	7696	2	FASN	17	80054315	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	43601125	80054315	1140895	30	36532										
SLC39A6	0	genome.wustl.edu	37	chr18	33706858	33706858	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	taatgccagattcccaattcGgactaattttctcagtggtc	7	10	1	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	18	33706858	33706858	G	C	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	missense	c.113	p.P38R	0.010	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	175	0	0	104	101	49.27	-	-	-	C	33706858	G	C	33706858	3	2	339	1	0	0	0	0	1	0	0	0	14711	1116	39	3	2202	3	SLC39A6	18	33706858	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09		33706858	44370390	31	36533										
ATCAY	0	genome.wustl.edu	37	chr19	3908273	3908273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	tgcctctcctcagggtactaCggcgaaggcctcaacgccat	10	15	3	0			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	19	3908273	3908273	C	T	SNP	ATCAY	ENST00000301260	human	ensembl	69_37n	1	known	silent	c.552	p.Y184	0.998	pfam_Bcl2-/adenovirus-E1B,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	ATCAY	HGNC	ENSG00000167654	29	0	0	27	22	44	-	-	-	T	3908273	C	T	3908273	2	4	339	1	0	0	0	0	0	0	0	1	1081	547	19	1		1	ATCAY	19	3908273	Silent	SNP	C	TCGA-AO-A125-01A-11D-A10M-09		3908273	55220710	32	36534										
PRKD2	0	genome.wustl.edu	37	chr19	47207835	47207835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	cagagacgtggatgacaggcGccgtttgcgggccccactac	14	13	0	2			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	19	47207835	47207835	G	A	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.583	p.R195C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	32	0	0	21	28	57.14	-	-	-	A	47207835	G	A	47207835	3	1	339	1	0	0	0	0	1	0	0	0	12600	1087	38	1	2113	1	PRKD2	19	47207835	Missense_Mutation	SNP	G	TCGA-AO-A125-01A-11D-A10M-09	43299562	47207835	11921148	33	36535										
IL17RA	0	genome.wustl.edu	37	chr22	17577966	17577966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	ccacaggggctaaactgcacGgtcaagaatagtaagtcatc	10	10	2	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	22	17577966	17577966	G	A	SNP	IL17RA	ENST00000319363	human	ensembl	69_37n	1	known	silent	c.153	p.T51	0.009	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663	324	0	0	256	216	45.76	-	-	-	A	17577966	G	A	17577966	2	1	339	1	0	0	0	0	0	0	0	1	7693	1103	39	1		1	IL17RA	22	17577966	Silent	SNP	G	TCGA-AO-A125-01A-11D-A10M-09		17577966	33726600	34	36536										
PHKA2	0	genome.wustl.edu	37	chrX	18969226	18969226	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	agcaaccccagctcacctgaGgcggtcatctgggccaggaa	12	14	3	1			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	X	18969226	18969226	G	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	silent	c.450	p.A150	0.966	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	120	0	0	79	148	65.2	-	-	-	T	18969226	G	T	18969226	2	4	339	1	0	0	0	0	0	0	0	1	11918	987	35	4		4	PHKA2	23	18969226	Silent	SNP	G	TCGA-AO-A125-01A-11D-A10M-09		18969226	136301334	35	36537										
CDX4	0	genome.wustl.edu	37	chrX	72674300	72674300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0857142857142857	3	0.904872247913239	0.945161290322581	1.5752688172043	0.787634408602151	1	1	0	gtttgagaatagtggaggctCggtgcaaagtgactctgact	14	6	1	3			TCGA-AO-A125-01A-11D-A10M-09	TCGA-AO-A125-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17669c6d-2eeb-4d56-ac72-f06bfafb7e42	423d3a68-5276-4fa6-bc76-298f23758452	X	72674300	72674300	C	T	SNP	CDX4	ENST00000373514	human	ensembl	69_37n	1	known	missense	c.734	p.S245L	0.984	superfamily_Homeodomain-like	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264	229	0	0	95	161	62.89	-	-	-	T	72674300	C	T	72674300	3	4	339	1	0	0	0	0	1	0	0	0	3213	893	31	1	744	1	CDX4	23	72674300	Missense_Mutation	SNP	C	TCGA-AO-A125-01A-11D-A10M-09	53705074	72674300	82596260	36	36538										
RERE	0	genome.wustl.edu	37	chr1	8421526	8421526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	actctctccctcaccttcagAtggcgagttgggcctgctga	10	14	3	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	1	8421526	8421526	A	G	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.2041	p.S681P	0.998	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	195	0	0	134	71	34.63	-	-	-	G	8421526	A	G	8421526	3	3	340	1	0	0	0	0	1	0	0	0	13314	333	12	5	2683	5	RERE	1	8421526	Missense_Mutation	SNP	A	TCGA-AO-A126-01A-11D-A10M-09		8421526	240829095	1	36539										
HRNR	0	genome.wustl.edu	37	chr1	152189237	152189237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	cagacccatgttggccactgCtggaagaccgaccggagcca	12	14	0	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	1	152189237	152189237	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.4868	p.S1623T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	12	0	0	5	3	37.5	-	-	-	G	152189237	C	G	152189237	3	3	340	1	0	0	0	0	1	0	0	0	7410	797	28	4	3688	4	HRNR	1	152189237	Missense_Mutation	SNP	C	TCGA-AO-A126-01A-11D-A10M-09	143767711	152189237	97061384	2	36540										
OR13G1	0	genome.wustl.edu	37	chr1	247836219	247836219	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	tatagattttggcaatgatgAtgagcatgttgccgagaaaa	11	4	0	5			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	1	247836219	247836219	A	C	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.125	p.I42S	0.058	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	97	0	0	65	31	32.29	-	-	-	C	247836219	A	C	247836219	3	2	340	1	0	0	0	0	1	0	0	0	11015	333	12	5	802	5	OR13G1	1	247836219	Missense_Mutation	SNP	A	TCGA-AO-A126-01A-11D-A10M-09	95646982	247836219	1414402	3	36541										
MYO7B	0	genome.wustl.edu	37	chr2	128364879	128364879	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	aggacagtccagctgcaggcCctgtgcaggggatacctggt	15	11	0	0			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	2	128364879	128364879	C	A	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	silent	c.2523	p.A841	0.566	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	33	0	0	30	4	11.76	-	-	-	A	128364879	C	A	128364879	2	1	340	1	0	0	0	0	0	0	0	1	10155	610	22	4		4	MYO7B	2	128364879	Silent	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		128364879	114834494	4	36542										
ICOS	0	genome.wustl.edu	37	chr2	204820385	204820385	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	tcaatggttctgccaattatGagatgtttatatttcacaac	6	7	3	1			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	2	204820385	204820385	G	A	SNP	ICOS	ENST00000316386	human	ensembl	69_37n	1	known	missense	c.85	p.E29K	0.072	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600	122	0	0	119	20	14.29	-	-	-	A	204820385	G	A	204820385	3	1	340	1	0	0	0	0	1	0	0	0	7540	1291	45	2	91	2	ICOS	2	204820385	Missense_Mutation	SNP	G	TCGA-AO-A126-01A-11D-A10M-09	76455506	204820385	38378988	5	36543										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	173	0	0	116	56	32.37	-	-	-	A	178936091	G	A	178936091	3	1	340	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AO-A126-01A-11D-A10M-09		178936091	19086339	6	36544										
C4orf40	0	genome.wustl.edu	37	chr4	71024598	71024598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	tgctgccccagaacctcaccCttctccctctcttgaacagg	6	18	3	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	4	71024598	71024598	C	A	SNP	C4orf40	ENST00000344526	human	ensembl	69_37n	1	known	missense	c.629	p.P210H	0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	23	0	0	20	4	16.67	-	-	-	A	71024598	C	A	71024598	3	1	340	1	0	0	0	0	1	0	0	0	2290	681	24	4	639	4	C4orf40	4	71024598	Missense_Mutation	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		71024598	120129678	7	36545										
HELQ	0	genome.wustl.edu	37	chr4	84368010	84368010	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	cgtctacaacaaccagacccAgactgtcaattcttccagtt	5	14	3	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	4	84368010	84368010	A	T	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.1370	p.L457Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	179	0	0	132	81	37.67	-	-	-	T	84368010	A	T	84368010	3	4	340	1	0	0	0	0	1	0	0	0	7098	188	7	5	1995	5	HELQ	4	84368010	Missense_Mutation	SNP	A	TCGA-AO-A126-01A-11D-A10M-09	13343412	84368010	106786266	8	36546										
IPO11	0	genome.wustl.edu	37	chr5	61781290	61781290	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	cttggaaatatagtttgaggGtaagtattaattgcaagaaa	10	2	0	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	5	61781290	61781290	G	T	SNP	IPO11	ENST00000409296	human	ensembl	69_37n	1	known	splice_site	c.1338+1	e12+1	1.000	-	-	-	no_errors	IPO11	HGNC	ENSG00000086200	252	0	0	129	59	31.38	-	-	-	T	61781290	G	T	61781290	5	4	340	1	0	0	0	0	0	0	1	0	7847	1275	44	4	1385	4	IPO11	5	61781290	Splice_Site	SNP	G	TCGA-AO-A126-01A-11D-A10M-09		61781290	119133970	9	36547										
SPINK5	0	genome.wustl.edu	37	chr5	147505286	147505286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ttccctttctcattttctagGatgagtgcagtgaatttcga	8	8	2	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	5	147505286	147505286	G	T	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	missense	c.2830	p.D944Y	0.981	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	137	1	0.72	91	55	37.16	-	-	-	T	147505286	G	T	147505286	3	4	340	1	0	0	0	0	1	0	0	0	15153	1188	41	2	2960	2	SPINK5	5	147505286	Missense_Mutation	SNP	G	TCGA-AO-A126-01A-11D-A10M-09	85723996	147505286	33409974	10	36548										
KCNK9	0	genome.wustl.edu	37	chr8	140631062	140631062	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	atgaagcagtagtagtaggcGtggaagaagctccactcctc	12	9	0	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	8	140631062	140631062	G	A	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	silent	c.564	p.H188	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	75	0	0	45	21	31.82	-	-	-	A	140631062	G	A	140631062	2	1	340	1	0	0	0	0	0	0	0	1	8126	1136	40	1		1	KCNK9	8	140631062	Silent	SNP	G	TCGA-AO-A126-01A-11D-A10M-09		140631062	5732960	11	36549										
OBFC1	0	genome.wustl.edu	37	chr10	105657473	105657473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ggggaggtccagggcgcctgGattgctgcggagggaaagtt	20	7	0	0			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	10	105657473	105657473	G	T	SNP	OBFC1	ENST00000224950	human	ensembl	69_37n	-1	known	missense	c.586	p.P196T	0.978	pfam_DUF1879_CST_STN1,pirsf_CST_STN1	pfam_DUF1879_CST_STN1,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960	110	0	0	59	46	43.81	-	-	-	T	105657473	G	T	105657473	3	4	340	1	0	0	0	0	1	0	0	0	10880	1174	41	2	536	2	OBFC1	10	105657473	Missense_Mutation	SNP	G	TCGA-AO-A126-01A-11D-A10M-09		105657473	29877274	12	36550										
ADD3	0	genome.wustl.edu	37	chr10	111892110	111892110	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	acgcttcatctgtttcacaaAttcagtctcaaactcagtca	4	12	7	0			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	10	111892110	111892110	A	T	SNP	ADD3	ENST00000356080	human	ensembl	69_37n	1	known	missense	c.1780	p.I594F	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700	184	0	0	167	88	34.51	-	-	-	T	111892110	A	T	111892110	3	4	340	1	0	0	0	0	1	0	0	0	306	101	4	5	1830	5	ADD3	10	111892110	Missense_Mutation	SNP	A	TCGA-AO-A126-01A-11D-A10M-09	6234637	111892110	23642637	13	36551										
SHANK2	0	genome.wustl.edu	37	chr11	70331577	70331577	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	gggcttttgatctctgtgacGtcgccccacaacttggaggt	12	11	1	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	11	70331577	70331577	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	silent	c.4824	p.D1608	0.026	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	83	0	0	158	37	18.88	-	-	-	A	70331577	G	A	70331577	2	1	340	1	0	0	0	0	0	0	0	1	14354	1136	40	1		1	SHANK2	11	70331577	Silent	SNP	G	TCGA-AO-A126-01A-11D-A10M-09		70331577	64674939	14	36552										
CDCA4	0	genome.wustl.edu	37	chr14	105477579	105477579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ctccaccacgtggtccagctCgcccaggtcggacttgcagc	11	17	0	0			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	14	105477579	105477579	C	T	SNP	CDCA4	ENST00000336219	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779	24	0	0	14	10	40	-	-	-	T	105477579	C	T	105477579	3	4	340	1	0	0	0	0	1	0	0	0	3117	893	31	1	41	1	CDCA4	14	105477579	Missense_Mutation	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		105477579	1871961	15	36553										
PDP2	0	genome.wustl.edu	37	chr16	66918915	66918915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	gagactggattctgacatctCgctggaaatccaggcccccc	10	14	2	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	16	66918915	66918915	C	T	SNP	PDP2	ENST00000311765	human	ensembl	69_37n	1	known	missense	c.728	p.S243L	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PDP2	HGNC	ENSG00000172840	36	0	0	12	24	66.67	-	-	-	T	66918915	C	T	66918915	3	4	340	1	0	0	0	0	1	0	0	0	11759	893	31	1	730	1	PDP2	16	66918915	Missense_Mutation	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		66918915	23435838	16	36554										
ZNF71	0	genome.wustl.edu	37	chr19	57133612	57133612	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ctcaccctgcaccagaggaaCcacaccggcgagaagcccta	9	17	1	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	19	57133612	57133612	C	A	SNP	ZNF71	ENST00000328070	human	ensembl	69_37n	1	known	missense	c.957	p.N319K	0.039	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	79	0	0	57	31	35.23	-	-	-	A	57133612	C	A	57133612	3	1	340	1	0	0	0	0	1	0	0	0	18210	506	18	4	959	4	ZNF71	19	57133612	Missense_Mutation	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		57133612	1995371	17	36555										
PPIL2	0	genome.wustl.edu	37	chr22	22049730	22049730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	aaccagtgccactgtccccaTgtccaagaagaagcccagtc	8	15	0	2			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	22	22049730	22049730	T	C	SNP	PPIL2	ENST00000412327	human	ensembl	69_37n	1	known	missense	c.1510	p.C504R	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	54	0	0	38	29	43.28	-	-	-	C	22049730	T	C	22049730	3	2	340	1	0	0	0	0	1	0	0	0	12404	1464	51	5	1592	5	PPIL2	22	22049730	Missense_Mutation	SNP	T	TCGA-AO-A126-01A-11D-A10M-09		22049730	29254836	18	36556										
PPM1F	0	genome.wustl.edu	37	chr22	22300420	22300420	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ctgtggggctccagaggacaTgcccaaagcatcccgggggc	15	13	0	1			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	22	22300420	22300420	T	C	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.1	p.M1V	0.938	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	40	0	0	26	13	32.5	-	-	-	C	22300420	T	C	22300420	3	2	340	1	0	0	0	0	1	0	0	0	12416	1464	51	5	1391	5	PPM1F	22	22300420	Missense_Mutation	SNP	T	TCGA-AO-A126-01A-11D-A10M-09	250690	22300420	29004146	19	36557										
MAGEE1	0	genome.wustl.edu	37	chrX	75649280	75649280	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	ggtgagggatcgagcacctcCgtgccgcccacccctggtgg	15	15	0	1			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	X	75649280	75649280	C	T	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	silent	c.957	p.S319	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	12	0	0	5	6	54.55	-	-	-	T	75649280	C	T	75649280	2	4	340	1	0	0	0	0	0	0	0	1	9256	639	23	1		1	MAGEE1	23	75649280	Silent	SNP	C	TCGA-AO-A126-01A-11D-A10M-09		75649280	79621280	20	36558										
PNCK	0	genome.wustl.edu	37	chrX	152936838	152936838	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.715651901048937	1.56565656565657	0	1.76136363636364	0.333333333333333	0.930327025915261	0	gggggccagagacagacagaCgcacgcacaggcacacacgc	14	14	0	3			TCGA-AO-A126-01A-11D-A10M-09	TCGA-AO-A126-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85b39644-6f19-40dc-94c1-0afc93ee4981	329950fe-6d8e-4e48-85c8-f963868375bb	X	152936838	152936838	C	T	SNP	PNCK	ENST00000370142	human	ensembl	69_37n	-1	known	silent	c.585	p.A195	0.017	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PNCK	HGNC	ENSG00000130822	48	0	0	34	15	30.61	-	-	-	T	152936838	C	T	152936838	2	4	340	1	0	0	0	0	0	0	0	1	12219	551	19	1		1	PNCK	23	152936838	Silent	SNP	C	TCGA-AO-A126-01A-11D-A10M-09	77287558	152936838	2333722	21	36559										
SDF4	0	genome.wustl.edu	37	chr1	1158710	1158710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttactcgccaaaaacttcAccttatactcgtcccaagac	3	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	1158710	1158710	A	G	SNP	SDF4	ENST00000360001	human	ensembl	69_37n	-1	known	missense	c.491	p.V164A	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SDF4	HGNC	ENSG00000078808	457	3	0.65	558	90	13.82	-	-	-	G	1158710	A	G	1158710	3	3	341	1	0	0	0	0	1	0	0	0	14050	159	6	5	729	5	SDF4	1	1158710	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09		1158710	248091911	1	36560										
SCNN1D	0	genome.wustl.edu	37	chr1	1222496	1222496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccctctcccagtgcaacaGcacgggcggcgactgctttt	10	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	1222496	1222496	G	A	SNP	SCNN1D	ENST00000379116	human	ensembl	69_37n	1	known	missense	c.1127	p.S376N	0.912	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,superfamily_FH2_actin-bd,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572	68	0	0	92	16	14.55	-	-	-	A	1222496	G	A	1222496	3	1	341	1	0	0	0	0	1	0	0	0	14017	971	34	4	855	4	SCNN1D	1	1222496	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	63786	1222496	248028125	2	36561										
TAS1R3	0	genome.wustl.edu	37	chr1	1267243	1267243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagtaccagccccgtgtgctGgctgtcatcgggccccactc	11	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	1267243	1267243	G	A	SNP	TAS1R3	ENST00000339381	human	ensembl	69_37n	1	known	silent	c.417	p.L139	0.945	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	60	0	0	76	25	24.75	-	-	-	A	1267243	G	A	1267243	2	1	341	1	0	0	0	0	0	0	0	1	15656	1335	47	4		4	TAS1R3	1	1267243	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	44747	1267243	247983378	3	36562										
ATAD3A	0	genome.wustl.edu	37	chr1	1469367	1469367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgatggacacccgcgtgcAagatgctgtccagcagcacc	11	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	1469367	1469367	A	G	SNP	ATAD3A	ENST00000378755	human	ensembl	69_37n	1	known	missense	c.1820	p.Q607R	0.984	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3A	HGNC	ENSG00000197785	117	0	0	165	22	11.7	-	-	-	G	1469367	A	G	1469367	3	3	341	1	0	0	0	0	1	0	0	0	1077	130	5	5	1882	5	ATAD3A	1	1469367	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	202124	1469367	247781254	4	36563										
GNB1	0	genome.wustl.edu	37	chr1	1747243	1747243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agatcttggccaggtgccccCgcagtgtcctcctcgtgcgc	12	16	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	1747243	1747243	C	T	SNP	GNB1	ENST00000378606	human	ensembl	69_37n	-1	known	missense	c.155	p.R52Q	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1	HGNC	ENSG00000078369	390	0	0	255	34	11.76	-	-	-	T	1747243	C	T	1747243	3	4	341	1	0	0	0	0	1	0	0	0	6567	652	23	1	895	1	GNB1	1	1747243	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	277876	1747243	247503378	5	36564										
NPHP4	0	genome.wustl.edu	37	chr1	6007234	6007234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgaccgcaaatgcagggtggCcgaccatctctgggaggcgg	16	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	6007234	6007234	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1049	p.G350D	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	148	0	0	148	25	14.29	-	-	-	T	6007234	C	T	6007234	3	4	341	1	0	0	0	0	1	0	0	0	10653	739	26	4	3319	4	NPHP4	1	6007234	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4259991	6007234	243243387	6	36565										
RNF207	0	genome.wustl.edu	37	chr1	6267486	6267486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgggctcccgccggtggaccGgctgctgcagttcctggtgg	17	14	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	6267486	6267486	G	A	SNP	RNF207	ENST00000377939	human	ensembl	69_37n	1	novel	missense	c.239	p.R80Q	1.000	NULL	pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	RNF207	HGNC	ENSG00000158286	57	0	0	77	10	11.49	-	-	-	A	6267486	G	A	6267486	3	1	341	1	0	0	0	0	1	0	0	0	13560	1116	39	1	245	1	RNF207	1	6267486	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	260252	6267486	242983135	7	36566										
ESPN	0	genome.wustl.edu	37	chr1	6504679	6504679	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcagctcgcctaccagcaccCtctccaactacgactcctgc	5	20	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	6504679	6504679	C	A	SNP	ESPN	ENST00000377828	human	ensembl	69_37n	1	known	missense	c.1129	p.L377I	0.991	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017	351	0	0	460	67	12.69	-	-	-	A	6504679	C	A	6504679	3	1	341	1	0	0	0	0	1	0	0	0	5291	681	24	4	1151	4	ESPN	1	6504679	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	237193	6504679	242745942	8	36567										
TAS1R1	0	genome.wustl.edu	37	chr1	6615560	6615560	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagattacctcctggcaggcCtgttccctctccattctggc	9	15	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	6615560	6615560	C	A	SNP	TAS1R1	ENST00000333172	human	ensembl	69_37n	1	known	missense	c.127	p.L43M	0.299	prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662	187	0	0	267	37	12.17	-	-	-	A	6615560	C	A	6615560	3	1	341	1	0	0	0	0	1	0	0	0	15654	680	24	4	129	4	TAS1R1	1	6615560	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	110881	6615560	242635061	9	36568										
SPSB1	0	genome.wustl.edu	37	chr1	9416157	9416157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcaatgtctttgtgaaggaGgacgacaagctcatctttca	9	9	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	9416157	9416157	G	T	SNP	SPSB1	ENST00000328089	human	ensembl	69_37n	1	known	missense	c.207	p.E69D	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB1	HGNC	ENSG00000171621	212	0	0	277	32	10.36	-	-	-	T	9416157	G	T	9416157	3	4	341	1	0	0	0	0	1	0	0	0	15203	991	35	4	209	4	SPSB1	1	9416157	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2800597	9416157	239834464	10	36569										
C1orf127	0	genome.wustl.edu	37	chr1	11007947	11007947	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agggctggacgtgtgtgcaaCcccccactcctcctggccca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	11007947	11007947	C	-	DEL	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	frame_shift_del	c.2245	p.V749fs	0.003	superfamily_DNA-bd_dom_put	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	46	0	0	86	16	15.38	-	-	-	-	11007947	C	-	11007947	7	5	341	1	0	1	0	1	0	0	0	0	2013	507	18	0	230	0	C1orf127	1	11007947	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	1591790	11007947	238242674	11	36570										
MTHFR	0	genome.wustl.edu	37	chr1	11854495	11854495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcttcactggtcagctcctCcccccacatcttcagcagct	5	18	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	11854495	11854495	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.1390	p.E464K	1.000	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	133	0	0	157	24	13.11	-	-	-	T	11854495	C	T	11854495	3	4	341	1	0	0	0	0	1	0	0	0	10003	864	30	2	723	2	MTHFR	1	11854495	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	846548	11854495	237396126	12	36571										
CLCN6	0	genome.wustl.edu	37	chr1	11889363	11889363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcgagtcaaatcggtaatgActcattccagctccaggtaa	8	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	11889363	11889363	A	G	SNP	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	missense	c.1232	p.D411G	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	341	1	0.29	353	60	14.49	-	-	-	G	11889363	A	G	11889363	3	3	341	1	0	0	0	0	1	0	0	0	3497	275	10	5	1292	5	CLCN6	1	11889363	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	34868	11889363	237361258	13	36572										
MFN2	0	genome.wustl.edu	37	chr1	12064574	12064574	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttttgctgtaggtgtcgacTgcaatggccgaggagatcag	14	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	12064574	12064574	T	C	SNP	MFN2	ENST00000235329	human	ensembl	69_37n	1	known	silent	c.1296	p.T432	0.005	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN2	HGNC	ENSG00000116688	347	0	0	346	64	15.61	-	-	-	C	12064574	T	C	12064574	2	2	341	1	0	0	0	0	0	0	0	1	9595	1567	55	5		5	MFN2	1	12064574	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	175211	12064574	237186047	14	36573										
VPS13D	0	genome.wustl.edu	37	chr1	12309333	12309333	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatggtgtcaccaatccctcCcatccttttgcttttggcat	7	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	12309333	12309333	C	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	silent	c.501	p.S167	0.998	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	481	0	0	139	31	18.24	-	-	-	A	12309333	C	A	12309333	2	1	341	1	0	0	0	0	0	0	0	1	17289	610	22	4		4	VPS13D	1	12309333	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	244759	12309333	236941288	15	36574										
VPS13D	0	genome.wustl.edu	37	chr1	12343611	12343611	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgttgattttaattgcttgGatgtgctgatcacactgcaa	9	6	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	12343611	12343611	G	A	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	nonsense	c.1920	p.W640*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	212	0	0	49	9	15.52	-	-	-	A	12343611	G	A	12343611	4	1	341	1	0	0	0	0	0	1	0	0	17289	1174	41	2	5530	2	VPS13D	1	12343611	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	34278	12343611	236907010	16	36575										
FBLIM1	0	genome.wustl.edu	37	chr1	16091623	16091623	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgggaggctcctgcccccAtgaagacacccgaggctggc	13	16	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	16091623	16091623	A	G	SNP	FBLIM1	ENST00000441801	human	ensembl	69_37n	1	known	missense	c.145	p.M49V	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FBLIM1	HGNC	ENSG00000162458	24	0	0	62	11	15.07	-	-	-	G	16091623	A	G	16091623	3	3	341	1	0	0	0	0	1	0	0	0	5743	217	8	5	147	5	FBLIM1	1	16091623	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3748012	16091623	233158998	17	36576										
SPATA21	0	genome.wustl.edu	37	chr1	16727090	16727090	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgatgtacacagttaagcccGaagtgggaaactggcctctc	11	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	16727090	16727090	G	A	SNP	SPATA21	ENST00000466212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA21	HGNC	ENSG00000187144	23	0	0	30	5	14.29	-	-	-	A	16727090	G	A	16727090	1	1	341	0	1	0	0	0	0	0	0	0	15098	1073	37	1		1	SPATA21	1	16727090	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	635467	16727090	232523531	18	36577										
PQLC2	0	genome.wustl.edu	37	chr1	19644224	19644224	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctccagctgccccagtggctCcatccagtggatatgggatg	12	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	19644224	19644224	C	A	SNP	PQLC2	ENST00000375153	human	ensembl	69_37n	1	known	missense	c.53	p.S18Y	0.966	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487	223	0	0	235	54	18.69	-	-	-	A	19644224	C	A	19644224	3	1	341	1	0	0	0	0	1	0	0	0	12496	855	30	2	55	2	PQLC2	1	19644224	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2917134	19644224	229606397	19	36578										
EXTL1	0	genome.wustl.edu	37	chr1	26357780	26357780	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccctggggatgggacaaccTgaagtcccctcagctctacc	11	15	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	26357780	26357780	T	C	SNP	EXTL1	ENST00000484339	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXTL1	HGNC	ENSG00000158008	60	0	0	99	14	12.07	-	-	-	C	26357780	T	C	26357780	1	2	341	0	1	0	0	0	0	0	0	0	5362	1595	55	5		5	EXTL1	1	26357780	RNA	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6713556	26357780	222892841	20	36579										
UBXN11	0	genome.wustl.edu	37	chr1	26612397	26612397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagcttcagcgggatgggctCgagggtacgcagccgtgccc	17	12	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	26612397	26612397	C	T	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.691	p.E231K	0.994	superfamily_SEP_domain	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	125	0	0	165	24	12.7	-	-	-	T	26612397	C	T	26612397	3	4	341	1	0	0	0	0	1	0	0	0	17010	893	31	1	899	1	UBXN11	1	26612397	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	254617	26612397	222638224	21	36580										
FGR	0	genome.wustl.edu	37	chr1	27942257	27942257	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgctccagcgtgatggagcTgcggctgatctcccaggcgt	15	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	27942257	27942257	T	C	SNP	FGR	ENST00000374003	human	ensembl	69_37n	-1	known	missense	c.781	p.S261G	0.072	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FGR	HGNC	ENSG00000000938	39	0	0	74	11	12.94	-	-	-	C	27942257	T	C	27942257	3	2	341	1	0	0	0	0	1	0	0	0	5920	1580	55	5	832	5	FGR	1	27942257	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1329860	27942257	221308364	22	36581										
RCC1	0	genome.wustl.edu	37	chr1	28858719	28858719	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaatgatgagggtgccctgGgaagggacacatcagtggag	17	7	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	28858719	28858719	G	T	SNP	RCC1	ENST00000373831	human	ensembl	69_37n	1	known	nonsense	c.391	p.G131*	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198	227	0	0	319	59	15.61	-	-	-	T	28858719	G	T	28858719	4	4	341	1	0	0	0	0	0	1	0	0	13256	1233	43	4	405	4	RCC1	1	28858719	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	916462	28858719	220391902	23	36582										
PTPRU	0	genome.wustl.edu	37	chr1	29649886	29649886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccgtgcttatgcccagcccTgcctgcagtactggccagag	11	15	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	29649886	29649886	T	C	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.3862	p.C1288R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	158	0	0	171	21	10.88	-	-	-	C	29649886	T	C	29649886	3	2	341	1	0	0	0	0	1	0	0	0	12896	1580	55	5	3994	5	PTPRU	1	29649886	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	791167	29649886	219600735	24	36583										
ZMYM6	0	genome.wustl.edu	37	chr1	35477589	35477589	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctgaggttttacaactatGacatgaaacctggacacctt	8	9	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	35477589	35477589	G	T	SNP	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	missense	c.964	p.H322N	1.000	smart_TRASH	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	233	0	0	76	12	13.64	-	-	-	T	35477589	G	T	35477589	3	4	341	1	0	0	0	0	1	0	0	0	17800	1290	45	2	3049	2	ZMYM6	1	35477589	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5827703	35477589	213773032	25	36584										
ZMYM4	0	genome.wustl.edu	37	chr1	35851068	35851068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agccaaaattacaccgtgtgCgctttgcaaatcattgagat	8	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	35851068	35851068	C	T	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.1595	p.A532V	1.000	smart_TRASH	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	64	0	0	25	11	30.56	-	-	-	T	35851068	C	T	35851068	3	4	341	1	0	0	0	0	1	0	0	0	17798	768	27	1	1633	1	ZMYM4	1	35851068	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	373479	35851068	213399553	26	36585										
INPP5B	0	genome.wustl.edu	37	chr1	38411938	38411938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggatatgatgacgcagtattCcccctcagccagcgtctcct	9	14	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	38411938	38411938	C	T	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.43	p.E15K	0.971	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	71	0	0	97	25	20.49	-	-	-	T	38411938	C	T	38411938	3	4	341	1	0	0	0	0	1	0	0	0	7809	864	30	2	2790	2	INPP5B	1	38411938	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2560870	38411938	210838683	27	36586										
NT5C1A	0	genome.wustl.edu	37	chr1	40131204	40131204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgctcaccatagtggttgAtactgttgatgaggcggaca	12	8	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	40131204	40131204	A	G	SNP	NT5C1A	ENST00000235628	human	ensembl	69_37n	-1	known	missense	c.422	p.I141T	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981	289	1	0.34	309	62	16.71	-	-	-	G	40131204	A	G	40131204	3	3	341	1	0	0	0	0	1	0	0	0	10758	333	12	5	700	5	NT5C1A	1	40131204	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1719266	40131204	209119417	28	36587										
POMGNT1	0	genome.wustl.edu	37	chr1	46655663	46655663	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtccagaacctcagcctcacTgcagtagagggtgggagaat	13	10	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	46655663	46655663	T	G	SNP	POMGNT1	ENST00000371986	human	ensembl	69_37n	-1	known	splice_site	c.1650-2	e19-2	1.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998	53	0	0	67	21	23.86	-	-	-	G	46655663	T	G	46655663	5	3	341	1	0	0	0	0	0	0	1	0	12317	1594	55	5	346	5	POMGNT1	1	46655663	Splice_Site	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6524459	46655663	202594958	29	36588										
FAAH	0	genome.wustl.edu	37	chr1	46879247	46879247	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgaaaagcagtcatcctgAtggctctggctccagaggac	11	12	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	46879247	46879247	A	G	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	nonstop	c.1740	p.*580W	0.127	NULL	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	171	0	0	178	33	15.49	-	-	-	G	46879247	A	G	46879247	4	3	341	1	0	0	0	0	0	0	0	0	5393	346	12	5	1798	5	FAAH	1	46879247	Nonstop_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	223584	46879247	202371374	30	36589										
FAF1	0	genome.wustl.edu	37	chr1	51253812	51253812	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgaagaagaagaggaagtaGgagctgaagctggatgactt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	51253812	51253812	G	-	DEL	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	frame_shift_del	c.227	p.P76fs	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	212	0	0	43	11	20.37	-	-	-	-	51253812	G	-	51253812	7	5	341	1	0	1	0	1	0	0	0	0	5409	1000	35	0	1789	0	FAF1	1	51253812	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	4374565	51253812	197996809	31	36590										
ZYG11B	0	genome.wustl.edu	37	chr1	53267560	53267560	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctacattgaaatttactttgAgtgcactttggaacctcaca	6	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	53267560	53267560	A	G	SNP	ZYG11B	ENST00000294353	human	ensembl	69_37n	1	known	missense	c.1555	p.S519G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378	67	0	0	22	8	26.67	-	-	-	G	53267560	A	G	53267560	3	3	341	1	0	0	0	0	1	0	0	0	18344	304	11	5	1589	5	ZYG11B	1	53267560	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2013748	53267560	195983061	32	36591										
USP24	0	genome.wustl.edu	37	chr1	55546997	55546997	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagatatgttaagcttaccaAcattcctttgggatgagaca	8	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	55546997	55546997	A	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.7076	p.V2359D	0.996	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	206	0	0	25	5	16.67	-	-	-	T	55546997	A	T	55546997	3	4	341	1	0	0	0	0	1	0	0	0	17152	43	2	5	826	5	USP24	1	55546997	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2279437	55546997	193703624	33	36592										
USP1	0	genome.wustl.edu	37	chr1	62910505	62910505	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caagaaacatgccaactcctAaaaaaagaagaagtaaaaaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	62910505	62910505	A	-	DEL	USP1	ENST00000339950	human	ensembl	69_37n	1	known	frame_shift_del	c.654	p.E221fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	47	0	0	16	7	30.43	-	-	-	-	62910505	A	-	62910505	7	5	341	1	0	1	0	1	0	0	0	0	17137	349	13	0	672	0	USP1	1	62910505	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	7363508	62910505	186340116	34	36593										
DOCK7	0	genome.wustl.edu	37	chr1	62960021	62960021	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tattcagcaacaagtgctgcTgagtggactagacactgtgc	11	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	62960021	62960021	T	C	SNP	DOCK7	ENST00000454575	human	ensembl	69_37n	-1	known	missense	c.2629	p.S877G	0.085	NULL	pfam_DOCK,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK7	HGNC	ENSG00000116641	150	0	0	39	5	11.36	-	-	-	C	62960021	T	C	62960021	3	2	341	1	0	0	0	0	1	0	0	0	4727	1567	55	5	1324	5	DOCK7	1	62960021	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	49516	62960021	186290600	35	36594										
CACHD1	0	genome.wustl.edu	37	chr1	65139111	65139111	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacagcttcagtgacagaacGgtccagaggttttataaatt	9	7	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	65139111	65139111	G	A	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	silent	c.2691	p.T897	0.005	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	153	0	0	39	6	13.33	-	-	-	A	65139111	G	A	65139111	2	1	341	1	0	0	0	0	0	0	0	1	2562	1103	39	1		1	CACHD1	1	65139111	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2179090	65139111	184111510	36	36595										
SGIP1	0	genome.wustl.edu	37	chr1	67126207	67126207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgcttttagaggaaaagtccGgtaagaaataagtccttccc	9	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	67126207	67126207	G	A	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	silent	c.483	p.P161	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	195	0	0	33	4	10.81	-	-	-	A	67126207	G	A	67126207	2	1	341	1	0	0	0	0	0	0	0	1	14294	1130	39	1		1	SGIP1	1	67126207	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1987096	67126207	182124414	37	36596										
SGIP1	0	genome.wustl.edu	37	chr1	67207080	67207080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acattgaacttgttggagcaGggtatcgattttcactcatc	9	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	67207080	67207080	G	T	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.2518	p.G840W	1.000	superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	225	0	0	148	20	11.9	-	-	-	T	67207080	G	T	67207080	3	4	341	1	0	0	0	0	1	0	0	0	14294	1000	35	4	2519	4	SGIP1	1	67207080	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	80873	67207080	182043541	38	36597										
IL23R	0	genome.wustl.edu	37	chr1	67721609	67721609	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caatgttgtgaaaatgctacAggtaacctaacatcatccaa	6	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	67721609	67721609	A	T	SNP	IL23R	ENST00000347310	human	ensembl	69_37n	1	known	missense	c.1238	p.Q413L	0.998	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594	118	0	0	14	5	26.32	-	-	-	T	67721609	A	T	67721609	3	4	341	1	0	0	0	0	1	0	0	0	7730	202	7	5	1272	5	IL23R	1	67721609	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	514529	67721609	181529012	39	36598										
PTGER3	0	genome.wustl.edu	37	chr1	71477967	71477967	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttctgtccatcattagagcaGctggagacagcatttgctac							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	71477967	71477967	G	-	DEL	PTGER3	ENST00000351052	human	ensembl	69_37n	-1	known	frame_shift_del	c.1098	p.C367fs	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	107	0	0	19	3	13.64	-	-	-	-	71477967	G	-	71477967	7	5	341	1	0	1	0	1	0	0	0	0	12825	962	34	0	389	0	PTGER3	1	71477967	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	3756358	71477967	177772654	40	36599	297	2								
PTGER3	0	genome.wustl.edu	37	chr1	71477970	71477971	+	Frame_Shift_Ins	INS	-	-	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtccatcattagagcagctgINSgagacagcatttgctacctg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	71477970	71477971	-	C	INS	PTGER3	ENST00000351052	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1095_1094	p.S366fs	1.000:1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	111	0	0	19	3	13.64	-	-	-	C	71477971	-	C	71477970	7	5	341	1	0	1	1	0	0	0	0	0	12825	1335	47	0	392	0	PTGER3	1	71477970	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3	71477970	177772651	41	36600	297	2								
ASB17	0	genome.wustl.edu	37	chr1	76387916	76387916	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttaagacaatgttgatagggTttttttctctttctaagatt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	76387916	76387916	T	-	DEL	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	frame_shift_del	c.530	p.N177fs	0.996	superfamily_Ankyrin_rpt-contain_dom	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	107	0	0	64	27	29.67	-	-	-	-	76387916	T	-	76387916	7	5	341	1	0	1	0	1	0	0	0	0	1025	1725	60	0	365	0	ASB17	1	76387916	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	4909946	76387916	172862705	42	36601										
IFI44	0	genome.wustl.edu	37	chr1	79116235	79116236	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taatttccagatagatggaaINSgaaatagaaaagtgattatg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	79116235	79116236	-	T	INS	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	frame_shift_ins	c.355_356	p.R119fs	0.000:0.000	pfam_TLDc	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	30	0	0	8	2	20	-	-	-	T	79116236	-	T	79116235	7	5	341	1	0	1	1	0	0	0	0	0	7571	64	3	0	357	0	IFI44	1	79116235	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	2728319	79116235	170134386	43	36602										
TTLL7	0	genome.wustl.edu	37	chr1	84417536	84417536	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggaaacctaccaatttcaAactttgtcccggcaacattt	5	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	84417536	84417536	A	G	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.149	p.F50S	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	46	0	0	41	6	12.77	-	-	-	G	84417536	A	G	84417536	3	3	341	1	0	0	0	0	1	0	0	0	16829	14	1	5	2590	5	TTLL7	1	84417536	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5301301	84417536	164833085	44	36603										
CYR61	0	genome.wustl.edu	37	chr1	86048149	86048149	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accctttacaaggccagaaaTgtattgttcaaacaacttca	5	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	86048149	86048149	T	C	SNP	CYR61	ENST00000451137	human	ensembl	69_37n	1	known	missense	c.685	p.C229R	1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871	103	0	0	167	25	12.95	-	-	-	C	86048149	T	C	86048149	3	2	341	1	0	0	0	0	1	0	0	0	4230	1464	51	5	699	5	CYR61	1	86048149	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1630613	86048149	163202472	45	36604										
SH3GLB1	0	genome.wustl.edu	37	chr1	87200848	87200848	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagtatatgttggacctccaGaaacaactgggaaggtgata	11	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	87200848	87200848	G	T	SNP	SH3GLB1	ENST00000482504	human	ensembl	69_37n	1	known	missense	c.810	p.Q270H	0.999	pfam_BAR_dom,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033	172	0	0	35	4	10.26	-	-	-	T	87200848	G	T	87200848	3	4	341	1	0	0	0	0	1	0	0	0	14342	933	33	2	773	2	SH3GLB1	1	87200848	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1152699	87200848	162049773	46	36605										
TGFBR3	0	genome.wustl.edu	37	chr1	92224261	92224261	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgagcaggaacacaacagacTtgtggtggatgtggactgag	15	6	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	92224261	92224261	T	G	SNP	TGFBR3	ENST00000212355	human	ensembl	69_37n	-1	known	missense	c.293	p.K98T	1.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TGFBR3	HGNC	ENSG00000069702	223	0	0	36	8	17.78	-	-	-	G	92224261	T	G	92224261	3	3	341	1	0	0	0	0	1	0	0	0	15918	1609	56	5	2318	5	TGFBR3	1	92224261	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5023413	92224261	157026360	47	36606										
ABCA4	0	genome.wustl.edu	37	chr1	94576995	94576995	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagggatctcaacacttacaTggagttgttatagtttgaca	9	6	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	94576995	94576995	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.301	p.I101V	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	82	0	0	44	7	13.73	-	-	-	C	94576995	T	C	94576995	3	2	341	1	0	0	0	0	1	0	0	0	34	1478	51	5	6712	5	ABCA4	1	94576995	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2352734	94576995	154673626	48	36607										
SLC30A7	0	genome.wustl.edu	37	chr1	101377672	101377672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attatgtgttttctagagagCattagcccctccagatgtcc	8	10	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	101377672	101377672	C	T	SNP	SLC30A7	ENST00000357650	human	ensembl	69_37n	1	known	missense	c.389	p.A130V	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695	194	0	0	54	7	11.48	-	-	-	T	101377672	C	T	101377672	3	4	341	1	0	0	0	0	1	0	0	0	14649	710	25	4	407	4	SLC30A7	1	101377672	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6800677	101377672	147872949	49	36608										
CSF1	0	genome.wustl.edu	37	chr1	110458304	110458304	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaattacatttgagtttgtaGaccaggaacagttggtgagt	11	4	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	110458304	110458304	G	C	SNP	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	missense	c.211	p.D71H	0.974	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	359	0	0	350	45	11.36	-	-	-	C	110458304	G	C	110458304	3	2	341	1	0	0	0	0	1	0	0	0	3963	942	33	2	221	2	CSF1	1	110458304	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9080632	110458304	138792317	50	36609										
CSF1	0	genome.wustl.edu	37	chr1	110465849	110465849	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccatccctagcagtgacccGgcctctgtctcccctcatca	7	19	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	110465849	110465849	G	A	SNP	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	silent	c.606	p.P202	0.998	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	262	1	0.38	198	55	21.74	-	-	-	A	110465849	G	A	110465849	2	1	341	1	0	0	0	0	0	0	0	1	3963	1103	39	1		1	CSF1	1	110465849	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7545	110465849	138784772	51	36610										
ATP5F1	0	genome.wustl.edu	37	chr1	112002134	112002134	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggaacgactgtatagagtatAtaaggaagtaaagaatcgcc	11	5	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	112002134	112002134	A	T	SNP	ATP5F1	ENST00000369722	human	ensembl	69_37n	1	known	missense	c.569	p.Y190F	1.000	pfam_ATPase_F0-cplx_bsu_mt	pfam_ATPase_F0-cplx_bsu_mt	-	no_errors	ATP5F1	HGNC	ENSG00000116459	100	0	0	20	4	16.67	-	-	-	T	112002134	A	T	112002134	3	4	341	1	0	0	0	0	1	0	0	0	1156	449	16	5	591	5	ATP5F1	1	112002134	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1536285	112002134	137248487	52	36611										
WNT2B	0	genome.wustl.edu	37	chr1	113059818	113059818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtactctgcgcacctgctggCgtgcactctcagatttccgc	10	15	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	113059818	113059818	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	missense	c.757	p.R253C	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	133	0	0	115	16	12.21	-	-	-	T	113059818	C	T	113059818	3	4	341	1	0	0	0	0	1	0	0	0	17484	768	27	1	904	1	WNT2B	1	113059818	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1057684	113059818	136190803	53	36612										
TRIM33	0	genome.wustl.edu	37	chr1	114969881	114969881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcagcagggacaggatcacaCcgtgctttcaaaatatgacg	11	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	114969881	114969881	C	T	SNP	TRIM33	ENST00000448034	human	ensembl	69_37n	-1	known	missense	c.548	p.G183D	0.164	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIM33	HGNC	ENSG00000197323	113	0	0	21	5	19.23	-	-	-	T	114969881	C	T	114969881	3	4	341	1	0	0	0	0	1	0	0	0	16603	494	18	4	2097	4	TRIM33	1	114969881	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1910063	114969881	134280740	54	36613										
AMPD1	0	genome.wustl.edu	37	chr1	115221038	115221038	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctttagggtcagattcttCtctttggtgctatagaccac	8	10	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	115221038	115221038	C	T	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	silent	c.1107	p.E369	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	169	0	0	160	21	11.6	-	-	-	T	115221038	C	T	115221038	2	4	341	1	0	0	0	0	0	0	0	1	585	912	32	2		2	AMPD1	1	115221038	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	251157	115221038	134029583	55	36614										
NRAS	0	genome.wustl.edu	37	chr1	115256541	115256541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actcttcttgtccagctgtaTccagtatgtccaacaaacag	6	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	115256541	115256541	T	G	SNP	NRAS	ENST00000369535	human	ensembl	69_37n	-1	known	missense	c.170	p.D57A	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NRAS	HGNC	ENSG00000213281	294	0	0	244	43	14.98	-	-	-	G	115256541	T	G	115256541	3	3	341	1	0	0	0	0	1	0	0	0	10713	1435	50	5	411	5	NRAS	1	115256541	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	35503	115256541	133994080	56	36615										
IGSF3	0	genome.wustl.edu	37	chr1	117131360	117131360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcgcccagaaacctcctctGccagcttgtaccaggcgtag	10	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	117131360	117131360	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	missense	c.2456	p.A819V	0.998	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	123	0	0	47	6	11.32	-	-	-	A	117131360	G	A	117131360	3	1	341	1	0	0	0	0	1	0	0	0	7655	1319	46	4	1204	4	IGSF3	1	117131360	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1874819	117131360	132119261	57	36616										
PTGFRN	0	genome.wustl.edu	37	chr1	117509637	117509637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaagaatattaagtcgccaCgctactctgttctcatcatg	6	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	117509637	117509637	C	T	SNP	PTGFRN	ENST00000393203	human	ensembl	69_37n	1	known	missense	c.1744	p.R582C	0.973	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PTGFRN	HGNC	ENSG00000134247	74	0	0	18	5	21.74	-	-	-	T	117509637	C	T	117509637	3	4	341	1	0	0	0	0	1	0	0	0	12831	536	19	1	1766	1	PTGFRN	1	117509637	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	378277	117509637	131740984	58	36617										
TTF2	0	genome.wustl.edu	37	chr1	117634491	117634491	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactcggaggcagcagactcAccgagatccagcaccgtcca	10	16	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	117634491	117634491	A	G	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	silent	c.2724	p.S908	0.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	165	1	0.6	132	32	19.51	-	-	-	G	117634491	A	G	117634491	2	3	341	1	0	0	0	0	0	0	0	1	16816	146	6	5		5	TTF2	1	117634491	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	124854	117634491	131616130	59	36618										
SPAG17	0	genome.wustl.edu	37	chr1	118693199	118693199	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagcattaccacctacaggTttttttgcctttttagatga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	118693199	118693199	T	-	DEL	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	frame_shift_del	c.282	p.K94fs	0.043	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	47	0	0	8	3	27.27	-	-	-	-	118693199	T	-	118693199	7	5	341	1	0	1	0	1	0	0	0	0	15070	1722	60	0	6573	0	SPAG17	1	118693199	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	1058708	118693199	130557422	60	36619										
TBX15	0	genome.wustl.edu	37	chr1	119466144	119466144	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catccccaacaggaacaggcTtagtgggtgaaaggtcactg	12	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	119466144	119466144	T	G	SNP	TBX15	ENST00000369429	human	ensembl	69_37n	-1	known	missense	c.776	p.K259T	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX15	HGNC	ENSG00000092607	454	0	0	54	8	12.9	-	-	-	G	119466144	T	G	119466144	3	3	341	1	0	0	0	0	1	0	0	0	15747	1609	56	5	1048	5	TBX15	1	119466144	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	772945	119466144	129784477	61	36620										
ZNF697	0	genome.wustl.edu	37	chr1	120165810	120165810	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccagctgaagcgcttgccgcActcgccacagccgtgcggct	12	17	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	120165810	120165810	A	G	SNP	ZNF697	ENST00000421812	human	ensembl	69_37n	-1	known	missense	c.1156	p.C386R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF697	HGNC	ENSG00000143067	40	0	0	54	8	12.7	-	-	-	G	120165810	A	G	120165810	3	3	341	1	0	0	0	0	1	0	0	0	18196	159	6	5	485	5	ZNF697	1	120165810	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	699666	120165810	129084811	62	36621										
FCGR1A	0	genome.wustl.edu	37	chr1	149759939	149759939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caggctggctactactgcagGtctccagcagagtcttcacg	11	13	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	149759939	149759939	G	A	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	missense	c.325	p.V109I	0.142	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	364	0	0	359	49	12.01	-	-	-	A	149759939	G	A	149759939	3	1	341	1	0	0	0	0	1	0	0	0	5825	1261	44	4	339	4	FCGR1A	1	149759939	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	29594129	149759939	99490682	63	36622										
OAZ3	0	genome.wustl.edu	37	chr1	151735645	151735645	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcggccaggaaagcgacggTaagctagtctccacaaggaa	14	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	151735645	151735645	T	C	SNP	OAZ3	ENST00000315067	human	ensembl	69_37n	1	known	splice_site	c.32+2	e1+2	0.003	-	-	-	no_errors	OAZ3	HGNC	ENSG00000143450	34	0	0	75	11	12.79	-	-	-	C	151735645	T	C	151735645	5	2	341	1	0	0	0	0	0	0	1	0	10879	1652	57	5	36	5	OAZ3	1	151735645	Splice_Site	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1975706	151735645	97514976	64	36623										
HRNR	0	genome.wustl.edu	37	chr1	152190750	152190750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agactggccagatccagagcCctgtcggccatagccagaag	12	13	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152190750	152190750	C	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.3355	p.G1119C	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	164	0	0	153	83	35.02	-	-	-	A	152190750	C	A	152190750	3	1	341	1	0	0	0	0	1	0	0	0	7410	623	22	4	5201	4	HRNR	1	152190750	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	455105	152190750	97059871	65	36624										
FLG2	0	genome.wustl.edu	37	chr1	152327898	152327898	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaaagccagatgtctgtctAgacccatgttggccatagcc	9	13	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152327898	152327898	A	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	silent	c.2364	p.S788	0.003	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	789	2	0.25	168	22	11.52	-	-	-	T	152327898	A	T	152327898	2	4	341	1	0	0	0	0	0	0	0	1	5969	407	15	5		5	FLG2	1	152327898	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	137148	152327898	96922723	66	36625			1	63		3	3	484	N	C_A	9.898957e-05
FLG2	0	genome.wustl.edu	37	chr1	152327925	152327925	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttggccatagccagatgaCtgacttgagccagaactgtg	12	9	0	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152327925	152327925	C	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	silent	c.2337	p.Q779	0.099	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	770	2	0.26	155	18	10.4	-	-	-	T	152327925	C	T	152327925	2	4	341	1	0	0	0	0	0	0	0	1	5969	564	20	4		4	FLG2	1	152327925	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	27	152327925	96922696	67	36626			1	63		3	3	484	N	C_A	9.898957e-05
FLG2	0	genome.wustl.edu	37	chr1	152328381	152328381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttggccatagccagatgaCtgacttgagccagaactgtg	12	9	0	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152328381	152328381	C	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	silent	c.1881	p.Q627	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	669	2	0.3	143	16	10.06	-	-	-	T	152328381	C	T	152328381	2	4	341	1	0	0	0	0	0	0	0	1	5969	564	20	4		4	FLG2	1	152328381	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	456	152328381	96922240	68	36627			1	63		3	3	484	N	C_A	9.898957e-05
CRNN	0	genome.wustl.edu	37	chr1	152382472	152382472	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgtggcttacagtttggctTctgtcctgctccacagtctc	9	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152382472	152382472	T	G	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	missense	c.1086	p.R362S	0.000	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	514	4	0.77	195	26	11.76	-	-	-	G	152382472	T	G	152382472	3	3	341	1	0	0	0	0	1	0	0	0	3922	1780	62	5	405	5	CRNN	1	152382472	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	54091	152382472	96868149	69	36628										
CRNN	0	genome.wustl.edu	37	chr1	152382487	152382487	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcttctgtcctgctccacAgtctcggtgtgtgaccctgc	11	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	152382487	152382487	A	G	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	silent	c.1071	p.T357	0.012	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	598	6	0.99	233	29	10.98	-	-	-	G	152382487	A	G	152382487	2	3	341	1	0	0	0	0	0	0	0	1	3922	175	7	5		5	CRNN	1	152382487	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	15	152382487	96868134	70	36629										
DENND4B	0	genome.wustl.edu	37	chr1	153912082	153912082	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taccctgcaggaagaaaaggTtgtcaacatcacgagctccc	9	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	153912082	153912082	T	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.1802	p.N601S	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	74	0	0	99	11	10	-	-	-	C	153912082	T	C	153912082	3	2	341	1	0	0	0	0	1	0	0	0	4470	1725	60	5	2756	5	DENND4B	1	153912082	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1529595	153912082	95338539	71	36630										
NUP210L	0	genome.wustl.edu	37	chr1	154125327	154125327	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tataaaggctcaacagtaacTgcatcatgatgggtggaatg	11	6	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	154125327	154125327	T	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	silent	c.225	p.A75	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	228	0	0	124	28	18.42	-	-	-	C	154125327	T	C	154125327	2	2	341	1	0	0	0	0	0	0	0	1	10834	1567	55	5		5	NUP210L	1	154125327	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	213245	154125327	95125294	72	36631										
CHRNB2	0	genome.wustl.edu	37	chr1	154543683	154543683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtgctgacggcatgtacgaGgtgtccttctattccaatgc	11	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	154543683	154543683	G	T	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	missense	c.384	p.E128D	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	145	0	0	248	41	14.19	-	-	-	T	154543683	G	T	154543683	3	4	341	1	0	0	0	0	1	0	0	0	3420	991	35	4	402	4	CHRNB2	1	154543683	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	418356	154543683	94706938	73	36632										
TRIM46	0	genome.wustl.edu	37	chr1	155148580	155148580	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgcaagcccccaccactagAggccaccaagggctgcacag	11	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	155148580	155148580	A	G	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.542	p.E181G	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	86	0	0	175	23	11.62	-	-	-	G	155148580	A	G	155148580	3	3	341	1	0	0	0	0	1	0	0	0	16617	304	11	5	552	5	TRIM46	1	155148580	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	604897	155148580	94102041	74	36633										
SCAMP3	0	genome.wustl.edu	37	chr1	155231397	155231397	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtacccaagctaacttgtctCactggcaaacccttcccttc	5	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	155231397	155231397	C	A	SNP	SCAMP3	ENST00000480219	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SCAMP3	HGNC	ENSG00000116521	79	0	0	156	21	11.86	-	-	-	A	155231397	C	A	155231397	1	1	341	0	1	0	0	0	0	0	0	0	13959	841	29	2		2	SCAMP3	1	155231397	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	82817	155231397	94019224	75	36634										
GON4L	0	genome.wustl.edu	37	chr1	155753797	155753797	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgtagagcttgaggggtgttAaagttaggacgaggctcagc	16	6	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	155753797	155753797	A	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.1872	p.F624	0.910	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	425	2	0.47	204	30	12.82	-	-	-	G	155753797	A	G	155753797	2	3	341	1	0	0	0	0	0	0	0	1	6621	359	13	5		5	GON4L	1	155753797	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	522400	155753797	93496824	76	36635										
GON4L	0	genome.wustl.edu	37	chr1	155792149	155792149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctccaaggtacggtcaagCatgtcatccagtttcaggtc	9	12	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	155792149	155792149	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.816	p.M272I	0.999	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	834	0	0	509	57	10	-	-	-	T	155792149	C	T	155792149	3	4	341	1	0	0	0	0	1	0	0	0	6621	710	25	4	6139	4	GON4L	1	155792149	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	38352	155792149	93458472	77	36636										
ARHGEF2	0	genome.wustl.edu	37	chr1	155920658	155920658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caagtacagggcatcgcctgCggggaggctgcgccgccgag	17	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	155920658	155920658	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2668	p.A890T	0.706	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	12	0	0	29	8	21.62	-	-	-	T	155920658	C	T	155920658	3	4	341	1	0	0	0	0	1	0	0	0	905	768	27	1	307	1	ARHGEF2	1	155920658	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	128509	155920658	93329963	78	36637										
MEX3A	0	genome.wustl.edu	37	chr1	156047130	156047130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcacccgtgatctcgaacacGgggtcgcggtcacggcttgg	15	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	156047130	156047130	G	A	SNP	MEX3A	ENST00000532414	human	ensembl	69_37n	-1	known	silent	c.798	p.P266	0.211	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726	686	0	0	954	460	32.46	-	-	-	A	156047130	G	A	156047130	2	1	341	1	0	0	0	0	0	0	0	1	9580	1103	39	1		1	MEX3A	1	156047130	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	126472	156047130	93203491	79	36638										
SEMA4A	0	genome.wustl.edu	37	chr1	156132967	156132967	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctatcatggcatagtaaatgCccaataaatgttagtgctct	7	8	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	156132967	156132967	C	T	SNP	SEMA4A	ENST00000469065	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEMA4A	HGNC	ENSG00000196189	16	0	0	35	17	32.69	-	-	-	T	156132967	C	T	156132967	1	4	341	0	1	0	0	0	0	0	0	0	14119	754	26	4		4	SEMA4A	1	156132967	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	85837	156132967	93117654	80	36639										
SH2D2A	0	genome.wustl.edu	37	chr1	156777006	156777006	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggggaagccatgcctgtccTctgtcctgaagcacctgtct	11	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	156777006	156777006	T	G	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	missense	c.1164	p.R388S	0.444	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	54	0	0	76	9	10.47	-	-	-	G	156777006	T	G	156777006	3	3	341	1	0	0	0	0	1	0	0	0	14320	1548	54	5	39	5	SH2D2A	1	156777006	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	644039	156777006	92473615	81	36640										
ARHGEF11	0	genome.wustl.edu	37	chr1	156908247	156908247	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccttccacttcaggtggcccAggctctgactggccactctc	9	17	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	156908247	156908247	A	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.4155	p.P1385	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	270	1	0.37	309	42	11.93	-	-	-	C	156908247	A	C	156908247	2	2	341	1	0	0	0	0	0	0	0	1	898	175	7	5		5	ARHGEF11	1	156908247	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	131241	156908247	92342374	82	36641										
ETV3	0	genome.wustl.edu	37	chr1	157095727	157095727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagaggtgggaaatggaaccGggaagaggctgttggcactg	18	6	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	157095727	157095727	G	A	SNP	ETV3	ENST00000368192	human	ensembl	69_37n	-1	known	missense	c.445	p.R149W	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV3	HGNC	ENSG00000117036	103	0	0	82	15	15.46	-	-	-	A	157095727	G	A	157095727	3	1	341	1	0	0	0	0	1	0	0	0	5316	1115	39	1	1097	1	ETV3	1	157095727	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	187480	157095727	92154894	83	36642										
KIRREL	0	genome.wustl.edu	37	chr1	158064133	158064133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgatgtggatctgaagcagGacctgcgctgcgacaccatc	12	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	158064133	158064133	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.1798	p.D600N	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	204	0	0	278	33	10.58	-	-	-	A	158064133	G	A	158064133	3	1	341	1	0	0	0	0	1	0	0	0	8377	1174	41	2	1804	2	KIRREL	1	158064133	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	968406	158064133	91186488	84	36643										
CADM3	0	genome.wustl.edu	37	chr1	159166177	159166177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caccaactgcgatgattaggCcagaccctccccatcctcgt	7	17	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	159166177	159166177	C	T	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	1	known	missense	c.817	p.P273S	0.999	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	425	0	0	315	36	10.26	-	-	-	T	159166177	C	T	159166177	3	4	341	1	0	0	0	0	1	0	0	0	2593	739	26	4	843	4	CADM3	1	159166177	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1102044	159166177	90084444	85	36644										
COPA	0	genome.wustl.edu	37	chr1	160275509	160275509	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtagtgctacatgtgacatGtctgctgaccagataacgta	10	8	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	160275509	160275509	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1497	p.D499	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	162	0	0	74	11	12.94	-	-	-	A	160275509	G	A	160275509	2	1	341	1	0	0	0	0	0	0	0	1	3757	1368	48	4		4	COPA	1	160275509	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1109332	160275509	88975112	86	36645										
NR1I3	0	genome.wustl.edu	37	chr1	161201001	161201002	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggaagtgaaagagcaactccINSaaaaactctacctggaaccc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	161201001	161201002	-	A	INS	NR1I3	ENST00000367979	human	ensembl	69_37n	-1	known	frame_shift_ins	c.729_728	p.L243fs	0.995:0.995	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I3	HGNC	ENSG00000143257	56	0	0	66	14	17.5	-	-	-	A	161201002	-	A	161201001	7	5	341	1	0	1	1	0	0	0	0	0	10694	593	21	0	451	0	NR1I3	1	161201001	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	925492	161201001	88049620	87	36646										
FCGR3A	0	genome.wustl.edu	37	chr1	161600157	161600157	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaccatgaagctgactcaCcagtccgcatgccagctgaa	9	13	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	161600157	161600157	C	T	SNP	FCGR3A	ENST00000540048	human	ensembl	69_37n	-1	known	splice_site	c.61+1	e2+1	0.992	-	-	-	no_errors	FCGR3A	HGNC	ENSG00000203747	192	0	0	79	13	14.13	-	-	-	T	161600157	C	T	161600157	5	4	341	1	0	0	0	0	0	0	1	0	5830	521	18	4		4	FCGR3A	1	161600157	Splice_Site	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	399156	161600157	87650464	88	36647										
HSD17B7	0	genome.wustl.edu	37	chr1	162773289	162773289	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acatatggaattctgcctccGtttatatggacgctgttgat	9	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	162773289	162773289	G	A	SNP	HSD17B7	ENST00000254521	human	ensembl	69_37n	1	known	silent	c.711	p.P237	0.940	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196	325	0	0	57	16	21.92	-	-	-	A	162773289	G	A	162773289	2	1	341	1	0	0	0	0	0	0	0	1	7439	1132	40	1		1	HSD17B7	1	162773289	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1173132	162773289	86477332	89	36648										
F5	0	genome.wustl.edu	37	chr1	169509734	169509734	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atagtcatcttcactgctctGgacctcttcctttggaatga	7	11	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169509734	169509734	G	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	nonsense	c.4609	p.Q1537*	0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	81	0	0	34	7	17.07	-	-	-	A	169509734	G	A	169509734	4	1	341	1	0	0	0	0	0	1	0	0	5385	1357	47	4	2132	4	F5	1	169509734	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6736445	169509734	79740887	90	36649			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
F5	0	genome.wustl.edu	37	chr1	169510220	169510220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagaggtttgtctggctgaGgtctagagaaagggttgtat	16	3	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169510220	169510220	G	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4123	p.L1375F	0.003	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	423	1	0.24	361	96	21.01	-	-	-	A	169510220	G	A	169510220	3	1	341	1	0	0	0	0	1	0	0	0	5385	1000	35	4	2618	4	F5	1	169510220	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	486	169510220	79740401	91	36650			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
F5	0	genome.wustl.edu	37	chr1	169510246	169510246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagaaagggttgtatggctgGggtctggagaaaggggcatc	19	4	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169510246	169510246	G	A	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4097	p.P1366L	0.013	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	449	2	0.44	368	97	20.82	-	-	-	A	169510246	G	A	169510246	3	1	341	1	0	0	0	0	1	0	0	0	5385	1232	43	4	2644	4	F5	1	169510246	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	26	169510246	79740375	92	36651			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
F5	0	genome.wustl.edu	37	chr1	169510293	169510293	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agggctggggaaaggtttgtTtgactgagttctggagagag	18	3	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169510293	169510293	T	C	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	silent	c.4050	p.Q1350	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	453	4	0.88	397	101	20.12	-	-	-	C	169510293	T	C	169510293	2	2	341	1	0	0	0	0	0	0	0	1	5385	1838	64	5		5	F5	1	169510293	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	47	169510293	79740328	93	36652			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
F5	0	genome.wustl.edu	37	chr1	169510328	169510328	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagaggtttgtctggctgaAgtctagagaaagggttgtat	15	3	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169510328	169510328	A	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4015	p.F1339L	0.047	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	511	4	0.78	487	60	10.93	-	-	-	G	169510328	A	G	169510328	3	3	341	1	0	0	0	0	1	0	0	0	5385	72	3	5	2726	5	F5	1	169510328	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	35	169510328	79740293	94	36653			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
F5	0	genome.wustl.edu	37	chr1	169510463	169510463	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagaggtttgtctggctgaAgtctagagaaagggttgtat	15	3	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	169510463	169510463	A	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3880	p.F1294L	0.023	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	494	0	0	465	59	11.24	-	-	-	G	169510463	A	G	169510463	3	3	341	1	0	0	0	0	1	0	0	0	5385	72	3	5	2861	5	F5	1	169510463	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	135	169510463	79740158	95	36654			2	64	17181353	6	6	730	N	T_G_A	3.589793e-11
TOR3A	0	genome.wustl.edu	37	chr1	179054887	179054887	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccttgctctgtcgttccaCggctggtctggcacaggcaa	12	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	179054887	179054887	C	T	SNP	TOR3A	ENST00000367627	human	ensembl	69_37n	1	known	silent	c.498	p.H166	0.636	pfam_Torsin	pfam_Torsin	-	no_errors	TOR3A	HGNC	ENSG00000186283	87	0	0	153	27	15	-	-	-	T	179054887	C	T	179054887	2	4	341	1	0	0	0	0	0	0	0	1	16472	535	19	1		1	TOR3A	1	179054887	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	9544424	179054887	70195734	96	36655										
EDEM3	0	genome.wustl.edu	37	chr1	184677451	184677451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcctgcatgaacctcaaccCatcttcagcgtcgattgaac	6	15	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	184677451	184677451	C	T	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.1873	p.G625R	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	103	0	0	26	4	13.33	-	-	-	T	184677451	C	T	184677451	3	4	341	1	0	0	0	0	1	0	0	0	4948	594	21	4	941	4	EDEM3	1	184677451	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5622564	184677451	64573170	97	36656										
PTGS2	0	genome.wustl.edu	37	chr1	186644409	186644409	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcttcaaatgattcatagggCttcagcataaagcgtttgcg	9	8	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	186644409	186644409	C	T	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	silent	c.1377	p.K459	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	65	0	0	110	21	16.03	-	-	-	T	186644409	C	T	186644409	2	4	341	1	0	0	0	0	0	0	0	1	12837	796	28	4		4	PTGS2	1	186644409	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1966958	186644409	62606212	98	36657										
CFHR1	0	genome.wustl.edu	37	chr1	196799650	196799650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attctacgggaaaatgtgggCcccctccacctattgacaat	8	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	196799650	196799650	C	T	SNP	CFHR1	ENST00000320493	human	ensembl	69_37n	1	known	missense	c.628	p.P210S	0.317	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414	298	0	0	288	34	10.56	-	-	-	T	196799650	C	T	196799650	3	4	341	1	0	0	0	0	1	0	0	0	3313	739	26	4	646	4	CFHR1	1	196799650	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	10155241	196799650	52450971	99	36658										
CFHR5	0	genome.wustl.edu	37	chr1	196971781	196971781	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatggacgatggcaatcattAccacgctgtgttggttagta	12	7	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	196971781	196971781	A	G	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	silent	c.1389	p.L463	0.187	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	105	0	0	38	12	24	-	-	-	G	196971781	A	G	196971781	2	3	341	1	0	0	0	0	0	0	0	1	3317	388	14	5		5	CFHR5	1	196971781	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	172131	196971781	52278840	100	36659										
ZNF281	0	genome.wustl.edu	37	chr1	200378119	200378119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caaagaaggtttggaagatgCacttggcttcctcttggctt	11	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	200378119	200378119	C	T	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	missense	c.715	p.A239T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	222	0	0	412	82	16.53	-	-	-	T	200378119	C	T	200378119	3	4	341	1	0	0	0	0	1	0	0	0	17914	710	25	4	1976	4	ZNF281	1	200378119	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3406338	200378119	48872502	101	36660										
IGFN1	0	genome.wustl.edu	37	chr1	201185644	201185644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccatagggctggcgtctgcCtccgctggcggcccccaagg	15	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	201185644	201185644	C	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.9358	p.L3120I	0.715	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	55	0	0	85	11	11.46	-	-	-	A	201185644	C	A	201185644	3	1	341	1	0	0	0	0	1	0	0	0	7644	681	24	4	9416	4	IGFN1	1	201185644	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	807525	201185644	48064977	102	36661										
SOX13	0	genome.wustl.edu	37	chr1	204092806	204092806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caggctcccgccacttccccGagtcccgaaacagcagccac	8	20	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	204092806	204092806	G	A	SNP	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	missense	c.1249	p.E417K	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	110	0	0	185	29	13.43	-	-	-	A	204092806	G	A	204092806	3	1	341	1	0	0	0	0	1	0	0	0	15033	1059	37	1	1291	1	SOX13	1	204092806	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2907162	204092806	45157815	103	36662										
LRRN2	0	genome.wustl.edu	37	chr1	204587556	204587556	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccctgtccttcgtccctgCctggctggaggagagcacgg	14	15	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	204587556	204587556	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	missense	c.1565	p.G522A	0.957	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	157	0	0	200	57	22.09	-	-	-	G	204587556	C	G	204587556	3	3	341	1	0	0	0	0	1	0	0	0	9101	739	26	4	580	4	LRRN2	1	204587556	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	494750	204587556	44663065	104	36663										
NUAK2	0	genome.wustl.edu	37	chr1	205275403	205275403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtctgcaggaacttgccttgAtggtagaggttggagagacc	15	7	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	205275403	205275403	A	C	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	missense	c.603	p.H201Q	0.920	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	171	1	0.58	262	30	10.2	-	-	-	C	205275403	A	C	205275403	3	2	341	1	0	0	0	0	1	0	0	0	10786	330	12	5	1295	5	NUAK2	1	205275403	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	687847	205275403	43975218	105	36664										
MFSD4	0	genome.wustl.edu	37	chr1	205548900	205548900	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctggcccagtcactatgggcCctgttcacctcctctctggc	9	17	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	205548900	205548900	C	A	SNP	MFSD4	ENST00000367147	human	ensembl	69_37n	1	known	silent	c.252	p.A84	0.974	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514	579	0	0	810	96	10.53	-	-	-	A	205548900	C	A	205548900	2	1	341	1	0	0	0	0	0	0	0	1	9604	610	22	4		4	MFSD4	1	205548900	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	273497	205548900	43701721	106	36665										
DYRK3	0	genome.wustl.edu	37	chr1	206821385	206821385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctggaaagtttcacattccGgaaccatgtttgcatggcct	10	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	206821385	206821385	G	A	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	missense	c.842	p.R281Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	76	0	0	31	17	35.42	-	-	-	A	206821385	G	A	206821385	3	1	341	1	0	0	0	0	1	0	0	0	4892	1116	39	1	873	1	DYRK3	1	206821385	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1272485	206821385	42429236	107	36666										
YOD1	0	genome.wustl.edu	37	chr1	207222861	207222861	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctacaatttgtgctatgaggCgtctcatctcaggggcacaa	10	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	207222861	207222861	C	A	SNP	YOD1	ENST00000315927	human	ensembl	69_37n	-1	known	missense	c.551	p.R184L	0.994	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667	162	0	0	206	91	30.43	-	-	-	A	207222861	C	A	207222861	3	1	341	1	0	0	0	0	1	0	0	0	17585	768	27	3	499	3	YOD1	1	207222861	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	401476	207222861	42027760	108	36667										
PLXNA2	0	genome.wustl.edu	37	chr1	208212197	208212197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgtccactgccctcggccGctgggaatagggcacattct	11	14	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	208212197	208212197	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.4633	p.R1545W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	254	0	0	328	49	13	-	-	-	A	208212197	G	A	208212197	3	1	341	1	0	0	0	0	1	0	0	0	12194	1086	38	1	1083	1	PLXNA2	1	208212197	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	989336	208212197	41038424	109	36668										
CAMK1G	0	genome.wustl.edu	37	chr1	209776626	209776626	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccacccactactacctggtcAtgcagctgtaagtaaaaggt	8	12	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	209776626	209776626	A	G	SNP	CAMK1G	ENST00000009105	human	ensembl	69_37n	1	known	missense	c.289	p.M97V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	405	0	0	130	49	27.07	-	-	-	G	209776626	A	G	209776626	3	3	341	1	0	0	0	0	1	0	0	0	2623	217	8	5	299	5	CAMK1G	1	209776626	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1564429	209776626	39473995	110	36669										
USH2A	0	genome.wustl.edu	37	chr1	215847781	215847781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taaaatcacgatagcgtgttTccaagcctgtatatacaatg	7	8	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	215847781	215847781	T	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13472	p.E4491G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	107	0	0	27	3	10	-	-	-	C	215847781	T	C	215847781	3	2	341	1	0	0	0	0	1	0	0	0	17133	1783	62	5	2176	5	USH2A	1	215847781	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6071155	215847781	33402840	111	36670										
TLR5	0	genome.wustl.edu	37	chr1	223283984	223283984	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatgtttcatcaactggtacTgggacaaggacccaaccacc	9	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	223283984	223283984	T	C	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	missense	c.2390	p.Q797R	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	141	0	0	130	23	15.03	-	-	-	C	223283984	T	C	223283984	3	2	341	1	0	0	0	0	1	0	0	0	16049	1580	55	5	190	5	TLR5	1	223283984	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	7436203	223283984	25966637	112	36671										
TLR5	0	genome.wustl.edu	37	chr1	223286290	223286290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaacgataaaaggctattcgGccatcaaaggagcaggaagg	12	7	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	223286290	223286290	G	A	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	silent	c.84	p.G28	0.000	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	66	0	0	68	8	10.53	-	-	-	A	223286290	G	A	223286290	2	1	341	1	0	0	0	0	0	0	0	1	16049	1190	42	4		4	TLR5	1	223286290	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2306	223286290	25964331	113	36672										
NVL	0	genome.wustl.edu	37	chr1	224492453	224492453	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctaacttttaatgtcatatcAttgcctcccacatcttcaaa	2	12	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	224492453	224492453	A	G	SNP	NVL	ENST00000469968	human	ensembl	69_37n	-1	novel	nonstop	c.457	p.*153R	1.000	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NVL	HGNC	ENSG00000143748	146	0	0	109	21	16.15	-	-	-	G	224492453	A	G	224492453	4	3	341	1	0	0	0	0	0	0	0	0	10853	214	8	5	1824	5	NVL	1	224492453	Nonstop_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1206163	224492453	24758168	114	36673										
MRPL55	0	genome.wustl.edu	37	chr1	228295776	228295776	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggccccctagccaggaagaGgctgccaggctgagcaaggg	16	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	228295776	228295776	G	T	SNP	MRPL55	ENST00000366731	human	ensembl	69_37n	-1	known	silent	c.36	p.A12	0.000	NULL	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910	26	0	0	55	12	17.91	-	-	-	T	228295776	G	T	228295776	2	4	341	1	0	0	0	0	0	0	0	1	9891	987	35	4		4	MRPL55	1	228295776	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3803323	228295776	20954845	115	36674										
OBSCN	0	genome.wustl.edu	37	chr1	228400246	228400246	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acggtgactgaaggcaagcaCgcgcgcctcagctgctacgt	13	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	228400246	228400246	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.762	p.H254	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	35	0	0	52	21	28.77	-	-	-	T	228400246	C	T	228400246	2	4	341	1	0	0	0	0	0	0	0	1	10885	535	19	1		1	OBSCN	1	228400246	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	104470	228400246	20850375	116	36675										
LYST	0	genome.wustl.edu	37	chr1	235872544	235872544	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaaagacgaggatcattacgCgcccaagggggaaggttgac	14	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	235872544	235872544	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.9990	p.A3330	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	170	0	0	44	17	27.87	-	-	-	T	235872544	C	T	235872544	2	4	341	1	0	0	0	0	0	0	0	1	9195	755	27	1		1	LYST	1	235872544	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7472298	235872544	13378077	117	36676										
LYST	0	genome.wustl.edu	37	chr1	235967816	235967816	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attcataccttctcagtcatAgcatcattatgttcaaaatc	3	10	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	235967816	235967816	A	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.3543	p.A1181	0.300	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	122	0	0	38	8	17.39	-	-	-	G	235967816	A	G	235967816	2	3	341	1	0	0	0	0	0	0	0	1	9195	407	15	5		5	LYST	1	235967816	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	95272	235967816	13282805	118	36677										
LYST	0	genome.wustl.edu	37	chr1	235969744	235969745	+	Frame_Shift_Ins	INS	-	-	G													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acacagaggaataggtttatINStgtgttgatatgaacatctt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	235969744	235969745	-	G	INS	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2692_2691	p.I897fs	0.994:0.353	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	69	0	0	11	2	15.38	-	-	-	G	235969745	-	G	235969744	7	5	341	1	0	1	1	0	0	0	0	0	9195	1493	52	0	8905	0	LYST	1	235969744	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1928	235969744	13280877	119	36678	298	2								
LYST	0	genome.wustl.edu	37	chr1	235969747	235969748	+	Frame_Shift_Ins	INS	-	-	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagaggaataggtttattgtINSgttgatatgaacatcttggt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	235969747	235969748	-	C	INS	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2689_2688	p.T896fs	0.984:0.997	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	70	0	0	12	2	14.29	-	-	-	C	235969748	-	C	235969747	7	5	341	1	0	1	1	0	0	0	0	0	9195	1696	59	0	8908	0	LYST	1	235969747	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3	235969747	13280874	120	36679	298	2								
ACTN2	0	genome.wustl.edu	37	chr1	236912433	236912433	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttattctttagagaatggagAaattgctagaaaccattgat	8	4	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	236912433	236912433	A	T	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	nonsense	c.1525	p.K509*	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	137	0	0	187	37	16.44	-	-	-	T	236912433	A	T	236912433	4	4	341	1	0	0	0	0	0	1	0	0	205	247	9	5	1579	5	ACTN2	1	236912433	Nonsense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	942686	236912433	12338188	121	36680										
EXO1	0	genome.wustl.edu	37	chr1	242042124	242042124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcctctggatgaaactgctGtcacagataaagagaacaat	9	8	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	1	242042124	242042124	G	A	SNP	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	missense	c.1588	p.V530I	0.050	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	92	0	0	42	5	10.42	-	-	-	A	242042124	G	A	242042124	3	1	341	1	0	0	0	0	1	0	0	0	5336	1377	48	4	1626	4	EXO1	1	242042124	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5129691	242042124	7208497	122	36681										
ALLC	0	genome.wustl.edu	37	chr2	3743393	3743393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaacctgcagacctagtgGccatcgcttttgggggtgtc	13	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	3743393	3743393	G	A	SNP	ALLC	ENST00000252505	human	ensembl	69_37n	1	known	missense	c.598	p.A200T	0.001	superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	151	0	0	133	27	16.77	-	-	-	A	3743393	G	A	3743393	3	1	341	1	0	0	0	0	1	0	0	0	534	1203	42	4	624	4	ALLC	2	3743393	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		3743393	239455980	123	36682										
KCNF1	0	genome.wustl.edu	37	chr2	11052976	11052976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgaggagctggaggagatcGcgcgccgcgtgcagctcatc	17	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	11052976	11052976	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	missense	c.424	p.A142T	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	49	0	0	62	8	11.43	-	-	-	A	11052976	G	A	11052976	3	1	341	1	0	0	0	0	1	0	0	0	8080	1087	38	1	426	1	KCNF1	2	11052976	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7309583	11052976	232146397	124	36683										
SMC6	0	genome.wustl.edu	37	chr2	17888625	17888625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcttttgggactgcattaCtgcacgagctacagaattat	10	8	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	17888625	17888625	C	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.1945	p.V649L	0.942	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	67	0	0	15	7	31.82	-	-	-	A	17888625	C	A	17888625	3	1	341	1	0	0	0	0	1	0	0	0	14876	565	20	4	1452	4	SMC6	2	17888625	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6835649	17888625	225310748	125	36684										
WDR35	0	genome.wustl.edu	37	chr2	20175335	20175335	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatgtgtatttccccatttgCcattccaaaaagtaagactt	5	9	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	20175335	20175335	C	T	SNP	WDR35	ENST00000445063	human	ensembl	69_37n	-1	known	nonsense	c.63	p.W21*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR35	HGNC	ENSG00000118965	137	0	0	24	5	17.24	-	-	-	T	20175335	C	T	20175335	4	4	341	1	0	0	0	0	0	1	0	0	17386	739	26	4	3111	4	WDR35	2	20175335	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2286710	20175335	223024038	126	36685										
APOB	0	genome.wustl.edu	37	chr2	21228935	21228936	+	Frame_Shift_Ins	INS	-	-	G													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actgggctgacttgcatggaINScctgaacaagagctgacatt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	21228935	21228936	-	G	INS	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	frame_shift_ins	c.10805_10804	p.V3602fs	0.628:0.679	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	97	0	0	16	2	11.11	-	-	-	G	21228936	-	G	21228935	7	5	341	1	0	1	1	0	0	0	0	0	787	275	10	0	2902	0	APOB	2	21228935	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1053600	21228935	221970438	127	36686										
APOB	0	genome.wustl.edu	37	chr2	21229742	21229742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cataggtaatattgcccatgGcaggaataaaaatatggctt	9	6	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	21229742	21229742	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.9998	p.A3333V	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	36	0	0	7	3	30	-	-	-	A	21229742	G	A	21229742	3	1	341	1	0	0	0	0	1	0	0	0	787	1203	42	4	3709	4	APOB	2	21229742	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	807	21229742	221969631	128	36687										
DNMT3A	0	genome.wustl.edu	37	chr2	25469589	25469589	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccacggccttggcagtgtcActctcatcgctgtcgtggca	11	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	25469589	25469589	A	G	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	silent	c.1179	p.S393	0.979	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	41	0	0	30	10	25	-	-	-	G	25469589	A	G	25469589	2	3	341	1	0	0	0	0	0	0	0	1	4711	156	6	5		5	DNMT3A	2	25469589	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4239847	25469589	217729784	129	36688										
DNMT3A	0	genome.wustl.edu	37	chr2	25470968	25470968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtccccagcatcggaccccaCgggctcaggcgtggtagcca	13	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	25470968	25470968	C	T	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.793	p.V265M	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	83	0	0	133	37	21.64	-	-	-	T	25470968	C	T	25470968	3	4	341	1	0	0	0	0	1	0	0	0	4711	536	19	1	2013	1	DNMT3A	2	25470968	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1379	25470968	217728405	130	36689										
GTF3C2	0	genome.wustl.edu	37	chr2	27559218	27559218	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctctggcactgggcaccagTccagagcccagagcggtccc	12	17	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	27559218	27559218	T	A	SNP	GTF3C2	ENST00000264720	human	ensembl	69_37n	-1	known	missense	c.1202	p.D401V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207	25	0	0	38	7	15.22	-	-	-	A	27559218	T	A	27559218	3	1	341	1	0	0	0	0	1	0	0	0	6924	1667	58	5	1581	5	GTF3C2	2	27559218	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2088250	27559218	215640155	131	36690										
C2orf16	0	genome.wustl.edu	37	chr2	27801825	27801825	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttaacttttcctttggccCttcataatcaaagctccgat	4	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	27801825	27801825	C	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.2386	p.L796I	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	98	0	0	51	7	12.07	-	-	-	A	27801825	C	A	27801825	3	1	341	1	0	0	0	0	1	0	0	0	2177	681	24	4	2388	4	C2orf16	2	27801825	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	242607	27801825	215397548	132	36691										
PLB1	0	genome.wustl.edu	37	chr2	28821595	28821595	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccaatgacacgaatgcattCctcaatcaagctgttcccgg	8	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	28821595	28821595	C	A	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	missense	c.2409	p.F803L	0.798	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	244	0	0	84	14	14.29	-	-	-	A	28821595	C	A	28821595	3	1	341	1	0	0	0	0	1	0	0	0	12098	854	30	2	2613	2	PLB1	2	28821595	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1019770	28821595	214377778	133	36692										
MSH6	0	genome.wustl.edu	37	chr2	48030639	48030640	+	Frame_Shift_Ins	INS	-	-	CC													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aattctgttgccggaagataINSccccccccttcttagagctt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	48030639	48030640	-	CC	INS	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	frame_shift_ins	c.3253_3254	p.F1088fs	0.001:0.003	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	311	0	0	56	7	11.11	-	-	-	CC	48030640	-	CC	48030639	7	5	341	1	0	1	1	0	0	0	0	0	9946	391	14	0	3271	0	MSH6	2	48030639	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	19209044	48030639	195168734	134	36693										
SPTBN1	0	genome.wustl.edu	37	chr2	54859887	54859887	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agatcgcatccaggagaaggTggactctattgatgacaggt	13	7	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	54859887	54859887	T	G	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.3749	p.V1250G	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	211	1	0.47	148	23	13.37	-	-	-	G	54859887	T	G	54859887	3	3	341	1	0	0	0	0	1	0	0	0	15210	1696	59	5	3924	5	SPTBN1	2	54859887	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6829248	54859887	188339486	135	36694										
RTN4	0	genome.wustl.edu	37	chr2	55209652	55209652	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaaggcaaaataaacttaccTtcagagaatcaactaaatca	4	8	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	55209652	55209652	T	G	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.3359	p.K1120T	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	52	0	0	14	8	36.36	-	-	-	G	55209652	T	G	55209652	3	3	341	1	0	0	0	0	1	0	0	0	13814	1623	56	5	239	5	RTN4	2	55209652	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	349765	55209652	187989721	136	36695										
WDR92	0	genome.wustl.edu	37	chr2	68358525	68358525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggcttacagaacctgcgaCtcccatttctattccctcag	6	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	68358525	68358525	C	T	SNP	WDR92	ENST00000295121	human	ensembl	69_37n	-1	known	missense	c.919	p.V307I	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR92	HGNC	ENSG00000243667	86	0	0	28	4	12.5	-	-	-	T	68358525	C	T	68358525	3	4	341	1	0	0	0	0	1	0	0	0	17436	565	20	4	158	4	WDR92	2	68358525	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	13148873	68358525	174840848	137	36696										
PCYOX1	0	genome.wustl.edu	37	chr2	70504174	70504174	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgggattgtgccctctgtgAgagaaaaggaagatcctgag	14	6	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	70504174	70504174	A	T	SNP	PCYOX1	ENST00000433351	human	ensembl	69_37n	1	known	nonsense	c.1168	p.R390*	0.412	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005	48	0	0	38	5	11.63	-	-	-	T	70504174	A	T	70504174	4	4	341	1	0	0	0	0	0	1	0	0	11681	296	11	5	1190	5	PCYOX1	2	70504174	Nonsense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2145649	70504174	172695199	138	36697										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73316500	73316500	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcccagggagcctggctccCgcccggtaccaggcactgcc	14	18	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	73316500	73316500	C	T	SNP	RAB11FIP5	ENST00000493523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	155	0	0	167	31	15.66	-	-	-	T	73316500	C	T	73316500	1	4	341	0	1	0	0	0	0	0	0	0	12980	667	23	1		1	RAB11FIP5	2	73316500	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2812326	73316500	169882873	139	36698										
SEMA4F	0	genome.wustl.edu	37	chr2	74902407	74902407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccagtgtttccagctgatgGccaccccctgctggtcacta	10	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	74902407	74902407	G	A	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.1268	p.G423D	0.076	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	277	0	0	117	27	18.75	-	-	-	A	74902407	G	A	74902407	3	1	341	1	0	0	0	0	1	0	0	0	14123	1203	42	4	1306	4	SEMA4F	2	74902407	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1585907	74902407	168296966	140	36699										
ATOH8	0	genome.wustl.edu	37	chr2	85991299	85991299	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccgagggacgtgccaagaaGcgcaaggtatgcaccagctg	15	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	85991299	85991299	G	A	SNP	ATOH8	ENST00000306279	human	ensembl	69_37n	1	known	silent	c.954	p.K318	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH8	HGNC	ENSG00000168874	83	0	0	98	16	14.04	-	-	-	A	85991299	G	A	85991299	2	1	341	1	0	0	0	0	0	0	0	1	1118	962	34	4		4	ATOH8	2	85991299	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	11088892	85991299	157208074	141	36700										
DUSP2	0	genome.wustl.edu	37	chr2	96809998	96809998	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccctcaaagtggttggggcAgctggcggacacgttgagga	17	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	96809998	96809998	A	G	SNP	DUSP2	ENST00000288943	human	ensembl	69_37n	-1	known	missense	c.625	p.C209R	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP2	HGNC	ENSG00000158050	139	0	0	129	33	20.37	-	-	-	G	96809998	A	G	96809998	3	3	341	1	0	0	0	0	1	0	0	0	4854	188	7	5	327	5	DUSP2	2	96809998	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	10818699	96809998	146389375	142	36701										
STARD7	0	genome.wustl.edu	37	chr2	96861094	96861094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcacctcggtactggtaaaGgtgggtgcctgtaattgggc	14	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	96861094	96861094	G	T	SNP	STARD7	ENST00000337288	human	ensembl	69_37n	-1	known	missense	c.484	p.L162I	0.999	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD7	HGNC	ENSG00000084090	265	0	0	94	12	11.32	-	-	-	T	96861094	G	T	96861094	3	4	341	1	0	0	0	0	1	0	0	0	15353	1000	35	4	656	4	STARD7	2	96861094	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	51096	96861094	146338279	143	36702										
SNRNP200	0	genome.wustl.edu	37	chr2	96943289	96943289	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggctcaccttgtctgtgcaAcgtttgatatgctcagaggt	11	10	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	96943289	96943289	A	G	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.5919	p.R1973	0.966	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	191	1	0.52	147	20	11.9	-	-	-	G	96943289	A	G	96943289	2	3	341	1	0	0	0	0	0	0	0	1	14941	30	2	5		5	SNRNP200	2	96943289	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	82195	96943289	146256084	144	36703										
COX5B	0	genome.wustl.edu	37	chr2	98264516	98264516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcacaaaggcgaggcccagcGatgcccccgctgtggagccc	14	16	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	98264516	98264516	G	A	SNP	COX5B	ENST00000258424	human	ensembl	69_37n	1	known	missense	c.335	p.R112Q	1.000	pfam_Cyt_c_oxidase_su5b	pfam_Cyt_c_oxidase_su5b	-	no_errors	COX5B	HGNC	ENSG00000135940	66	0	0	98	15	13.16	-	-	-	A	98264516	G	A	98264516	3	1	341	1	0	0	0	0	1	0	0	0	3803	1058	37	1	349	1	COX5B	2	98264516	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1321227	98264516	144934857	145	36704										
RPL31	0	genome.wustl.edu	37	chr2	101622441	101622441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaatgtgccataccgaatccGtgtgcggctgtccagaaaac	11	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	101622441	101622441	G	A	SNP	RPL31	ENST00000264258	human	ensembl	69_37n	1	known	missense	c.254	p.R85H	1.000	pfam_Ribosomal_L31e,superfamily_Ribosomal_L31e_dom	pfam_Ribosomal_L31e,superfamily_Ribosomal_L31e_dom	-	no_errors	RPL31	HGNC	ENSG00000071082	186	0	0	202	40	16.53	-	-	-	A	101622441	G	A	101622441	3	1	341	1	0	0	0	0	1	0	0	0	13667	1145	40	1	264	1	RPL31	2	101622441	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3357925	101622441	141576932	146	36705										
TGFBRAP1	0	genome.wustl.edu	37	chr2	105885905	105885905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcatcaaattcggtggcgtGgcggttcagcaggtccacgg	15	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	105885905	105885905	G	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	69_37n	-1	known	missense	c.2230	p.H744N	1.000	pfam_VPS39/TGF_beta_rcpt-assoc_2	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	73	0	0	77	9	10.47	-	-	-	T	105885905	G	T	105885905	3	4	341	1	0	0	0	0	1	0	0	0	15919	1348	47	4	360	4	TGFBRAP1	2	105885905	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4263464	105885905	137313468	147	36706										
MERTK	0	genome.wustl.edu	37	chr2	112785991	112785991	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgccccaccttttcagtattGaggctgcagctagaaaaact	8	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	112785991	112785991	G	C	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	missense	c.2550	p.L850F	0.980	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	73	0	0	32	15	31.91	-	-	-	C	112785991	G	C	112785991	3	2	341	1	0	0	0	0	1	0	0	0	9550	1281	45	2	2624	2	MERTK	2	112785991	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6900086	112785991	130413382	148	36707										
POLR1B	0	genome.wustl.edu	37	chr2	113332666	113332666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccccatggttttccatcccGcatgaccattgggatgttaa	8	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	113332666	113332666	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	missense	c.2882	p.R961H	0.974	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	177	0	0	40	9	18.37	-	-	-	A	113332666	G	A	113332666	3	1	341	1	0	0	0	0	1	0	0	0	12284	1087	38	1	2826	1	POLR1B	2	113332666	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	546675	113332666	129866707	149	36708										
CLASP1	0	genome.wustl.edu	37	chr2	122273282	122273282	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttactgagatctgccctcacAcgttctcctacatgtctgta	6	13	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	122273282	122273282	A	G	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	silent	c.603	p.R201	0.973	pfam_CLASP_N_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	227	0	0	114	13	10	-	-	-	G	122273282	A	G	122273282	2	3	341	1	0	0	0	0	0	0	0	1	3484	146	6	5		5	CLASP1	2	122273282	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	8940616	122273282	120926091	150	36709										
LIMS2	0	genome.wustl.edu	37	chr2	128400504	128400504	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggctgcgcacctacccacagTgggtgcagttgaagtggtca	14	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	128400504	128400504	T	C	SNP	LIMS2	ENST00000324938	human	ensembl	69_37n	-1	known	missense	c.575	p.H192R	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163	175	1	0.56	189	30	13.7	-	-	-	C	128400504	T	C	128400504	3	2	341	1	0	0	0	0	1	0	0	0	8859	1696	59	5	546	5	LIMS2	2	128400504	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6127222	128400504	114798869	151	36710										
SAP130	0	genome.wustl.edu	37	chr2	128767878	128767878	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtagcatgcgccgctgtcgtAgtgatgactggagactgagc	15	9	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	128767878	128767878	A	G	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	silent	c.912	p.T304	0.706	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	371	1	0.27	115	25	17.86	-	-	-	G	128767878	A	G	128767878	2	3	341	1	0	0	0	0	0	0	0	1	13917	407	15	5		5	SAP130	2	128767878	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	367374	128767878	114431495	152	36711										
TUBA3E	0	genome.wustl.edu	37	chr2	130949541	130949541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccttcgcccacgtaccagtGcacaaaggcccacttggcat	9	16	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	130949541	130949541	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	missense	c.1216	p.H406Y	1.000	superfamily_Tub_FtsZ_C,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	469	0	0	475	63	11.71	-	-	-	A	130949541	G	A	130949541	3	1	341	1	0	0	0	0	1	0	0	0	16845	1319	46	4	140	4	TUBA3E	2	130949541	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2181663	130949541	112249832	153	36712										
NCKAP5	0	genome.wustl.edu	37	chr2	133539536	133539536	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcaagagttccgtcatgaaGgtgtctttcgttgaacatgc	10	8	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	133539536	133539536	G	T	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.4848	p.T1616	0.810	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	566	0	0	174	36	17.06	-	-	-	T	133539536	G	T	133539536	2	4	341	1	0	0	0	0	0	0	0	1	10295	987	35	4		4	NCKAP5	2	133539536	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2589995	133539536	109659837	154	36713										
NCKAP5	0	genome.wustl.edu	37	chr2	134060613	134060613	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgaattgaactcacctccAgagactcctgtgttgctcct	7	13	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	134060613	134060613	A	G	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.139	p.W47R	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	211	1	0.47	94	14	12.96	-	-	-	G	134060613	A	G	134060613	3	3	341	1	0	0	0	0	1	0	0	0	10295	188	7	5	5658	5	NCKAP5	2	134060613	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	521077	134060613	109138760	155	36714										
YSK4	0	genome.wustl.edu	37	chr2	135743899	135743899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtcttctgaagggataaatGggatctggtgatgtagctct	13	5	4	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	135743899	135743899	G	A	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.2543	p.P848L	0.008	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	169	0	0	62	14	18.42	-	-	-	A	135743899	G	A	135743899	3	1	341	1	0	0	0	0	1	0	0	0	17592	1348	47	4	1459	4	YSK4	2	135743899	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1683286	135743899	107455474	156	36715										
MCM6	0	genome.wustl.edu	37	chr2	136605665	136605665	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atctacctccatctggatctCttcctcttgatctagattga	5	12	5	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	136605665	136605665	C	G	SNP	MCM6	ENST00000264156	human	ensembl	69_37n	-1	known	missense	c.2011	p.E671Q	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003	417	0	0	79	19	19.39	-	-	-	G	136605665	C	G	136605665	3	3	341	1	0	0	0	0	1	0	0	0	9462	922	32	2	470	2	MCM6	2	136605665	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	861766	136605665	106593708	157	36716										
TTN	0	genome.wustl.edu	37	chr2	179456195	179456197	+	In_Frame_Del	DEL	TCA	TCA	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcctttaccacaagacctTcaattaatttcacatctagc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	179456195	179456197	TCA	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	in_frame_del	c.52553_52551	p.E17518in_frame_del	1.000:1.000:1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	90	0	0	14	3	17.65	-	-	-	-	179456197	TCA	-	179456195	7	5	341	1	0	1	0	1	0	0	0	0	16832	1783	62	0	47958	0	TTN	2	179456195	In_Frame_Del	DEL	TCA	TCGA-AO-A128-01A-11D-A10M-09	42850530	179456195	63743178	158	36717										
ITGA4	0	genome.wustl.edu	37	chr2	182374492	182374492	+	Silent	SNP	A	A	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaattcccaccacttcagccAattcttcagcagaagaaaga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	182374492	182374492	A	C	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	silent	c.1803	p.P601	0.995	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	78	0	0	16	4	20	-	-	-	C	182374492	A	C	182374492	2	2	341	1	0	0	0	0	0	0	0	1	7932	117	5	5		5	ITGA4	2	182374492	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2918297	182374492	60824881	159	36718	299	2								
ITGA4	0	genome.wustl.edu	37	chr2	182374496	182374496	+	Missense_Mutation	SNP	C	C	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccaccacttcagccaattCttcagcagaagaaagaaaaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	182374496	182374496	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	1	known	missense	c.1807	p.L603F	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	68	0	0	12	4	25	-	-	-	T	182374496	C	T	182374496	3	4	341	1	0	0	0	0	1	0	0	0	7932	913	32	2	1869	2	ITGA4	2	182374496	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4	182374496	60824877	160	36719	299	2								
CALCRL	0	genome.wustl.edu	37	chr2	188245463	188245463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcattgattcagttcctgctGcaacatcgttccagcagagc	9	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	188245463	188245463	G	A	SNP	CALCRL	ENST00000392370	human	ensembl	69_37n	-1	known	missense	c.236	p.A79V	0.004	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989	85	0	0	50	12	19.35	-	-	-	A	188245463	G	A	188245463	3	1	341	1	0	0	0	0	1	0	0	0	2605	1319	46	4	1189	4	CALCRL	2	188245463	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5870967	188245463	54953910	161	36720										
COQ10B	0	genome.wustl.edu	37	chr2	198334832	198334832	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agacttttcaatcatttggaGactatttggcgttttagccc	8	8	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	198334832	198334832	G	T	SNP	COQ10B	ENST00000263960	human	ensembl	69_37n	1	known	missense	c.486	p.E162D	1.000	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10B	HGNC	ENSG00000115520	223	0	0	118	14	10.53	-	-	-	T	198334832	G	T	198334832	3	4	341	1	0	0	0	0	1	0	0	0	3774	933	33	2	500	2	COQ10B	2	198334832	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	10089369	198334832	44864541	162	36721										
AOX1	0	genome.wustl.edu	37	chr2	201515911	201515911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctgttggccttggctcacGtgctgctggtcaggtgagtt	14	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	201515911	201515911	G	T	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	missense	c.3062	p.R1021L	0.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	123	0	0	23	5	17.86	-	-	-	T	201515911	G	T	201515911	3	4	341	1	0	0	0	0	1	0	0	0	730	1145	40	3	3164	3	AOX1	2	201515911	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3181079	201515911	41683462	163	36722										
TRAK2	0	genome.wustl.edu	37	chr2	202285229	202285229	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgcattctgggattgactcAtgcaggatcctttcttgctt	9	9	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	202285229	202285229	A	G	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.2	p.M1T	1.000	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	177	0	0	83	15	15.31	-	-	-	G	202285229	A	G	202285229	3	3	341	1	0	0	0	0	1	0	0	0	16546	217	8	5	2802	5	TRAK2	2	202285229	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	769318	202285229	40914144	164	36723										
ALS2CR11	0	genome.wustl.edu	37	chr2	202483705	202483705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggttcagggcgtaagggaccGaagaagcctccgacccttta	13	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	202483705	202483705	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	missense	c.149	p.S50L	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	102	0	0	123	21	14.58	-	-	-	A	202483705	G	A	202483705	3	1	341	1	0	0	0	0	1	0	0	0	552	1059	37	1	5524	1	ALS2CR11	2	202483705	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	198476	202483705	40715668	165	36724										
CPS1	0	genome.wustl.edu	37	chr2	211469850	211469850	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgctatgaccaaccaaattCtggtggagaagtcagtgaca	10	8	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	211469850	211469850	C	T	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	silent	c.1879	p.L627	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	246	0	0	23	4	14.81	-	-	-	T	211469850	C	T	211469850	2	4	341	1	0	0	0	0	0	0	0	1	3853	912	32	2		2	CPS1	2	211469850	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	8986145	211469850	31729523	166	36725										
SPAG16	0	genome.wustl.edu	37	chr2	214878674	214878675	+	Frame_Shift_Ins	INS	-	-	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttaatttctctctttatagINStgaaagatgcagatgtactt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	214878674	214878675	-	C	INS	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	frame_shift_ins	c.1402_1401	p.E469fs	1.000:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	83	0	0	12	2	14.29	-	-	-	C	214878675	-	C	214878674	7	5	341	1	0	1	1	0	0	0	0	0	15069	1043	36	0	1466	0	SPAG16	2	214878674	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3408824	214878674	28320699	167	36726										
FN1	0	genome.wustl.edu	37	chr2	216257689	216257689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgtagtaggggcactctcgCcgccattaatgagagtgata	13	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	216257689	216257689	C	T	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.4034	p.G1345D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	159	0	0	26	8	23.53	-	-	-	T	216257689	C	T	216257689	3	4	341	1	0	0	0	0	1	0	0	0	6008	739	26	4	3487	4	FN1	2	216257689	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1379015	216257689	26941684	168	36727										
DNAJB2	0	genome.wustl.edu	37	chr2	220149662	220149662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgaggggtgaagcaaccaaaCgcagtccatccccagaggag	13	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	220149662	220149662	C	T	SNP	DNAJB2	ENST00000336576	human	ensembl	69_37n	1	known	missense	c.928	p.R310C	0.006	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB2	HGNC	ENSG00000135924	45	0	0	50	11	18.03	-	-	-	T	220149662	C	T	220149662	3	4	341	1	0	0	0	0	1	0	0	0	4655	536	19	1	958	1	DNAJB2	2	220149662	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3891973	220149662	23049711	169	36728										
SP100	0	genome.wustl.edu	37	chr2	231309023	231309023	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgatgtcaacatgcaggaatAccccgatttaattcacattt	6	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	231309023	231309023	A	G	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	missense	c.401	p.Y134C	0.127	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	94	0	0	54	26	32.5	-	-	-	G	231309023	A	G	231309023	3	3	341	1	0	0	0	0	1	0	0	0	15049	391	14	5	415	5	SP100	2	231309023	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	11159361	231309023	11890350	170	36729										
ARMC9	0	genome.wustl.edu	37	chr2	232121298	232121298	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttctgtcctcttccccccaGgcatccaccatgttacgagc	6	18	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	232121298	232121298	G	A	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	1	known	splice_site	c.880-1	e9-1	1.000	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931	450	1	0.22	542	95	14.91	-	-	-	A	232121298	G	A	232121298	5	1	341	1	0	0	0	0	0	0	1	0	962	1014	35	4	913	4	ARMC9	2	232121298	Splice_Site	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	812275	232121298	11078075	171	36730										
COL6A3	0	genome.wustl.edu	37	chr2	238253712	238253712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtacttacggcatttatctTtgatgctttggatgagggca	11	6	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	238253712	238253712	T	C	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.7151	p.K2384R	1.000	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	190	0	0	84	28	25	-	-	-	C	238253712	T	C	238253712	3	2	341	1	0	0	0	0	1	0	0	0	3731	1841	64	5	2426	5	COL6A3	2	238253712	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6132414	238253712	4945661	172	36731										
SCLY	0	genome.wustl.edu	37	chr2	239005491	239005491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgatggccagtgtgggggcCgcgtgccactcggaccacgg	17	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	239005491	239005491	C	T	SNP	SCLY	ENST00000437134	human	ensembl	69_37n	1	putative	missense	c.604	p.R202C	0.154	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCLY	HGNC	ENSG00000132330	82	0	0	104	39	27.08	-	-	-	T	239005491	C	T	239005491	3	4	341	1	0	0	0	0	1	0	0	0	13995	639	23	1	1200	1	SCLY	2	239005491	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	751779	239005491	4193882	173	36732										
PER2	0	genome.wustl.edu	37	chr2	239171644	239171644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtcactagggtggagctgcaCgagcactggggtttcaatca	14	9	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	239171644	239171644	C	T	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.1102	p.V368M	0.006	pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	251	0	0	221	35	13.67	-	-	-	T	239171644	C	T	239171644	3	4	341	1	0	0	0	0	1	0	0	0	11803	536	19	1	2721	1	PER2	2	239171644	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	166153	239171644	4027729	174	36733										
MTERFD2	0	genome.wustl.edu	37	chr2	242026897	242026897	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaccccaaacaggtgcctCtggggagcaggcccatgccg	13	14	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	242026897	242026897	C	A	SNP	MTERFD2	ENST00000455202	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTERFD2	HGNC	ENSG00000122085	52	0	0	51	25	32.89	-	-	-	A	242026897	C	A	242026897	1	1	341	0	1	0	0	0	0	0	0	0	9992	928	32	2		2	MTERFD2	2	242026897	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2855253	242026897	1172476	175	36734										
DTYMK	0	genome.wustl.edu	37	chr2	242619704	242619704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgtccacgacgagggtcacGccctggctcaacttttcctt	9	15	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	2	242619704	242619704	G	A	SNP	DTYMK	ENST00000420144	human	ensembl	69_37n	-1	novel	missense	c.257	p.A86V	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DTYMK	HGNC	ENSG00000168393	194	0	0	230	33	12.55	-	-	-	A	242619704	G	A	242619704	3	1	341	1	0	0	0	0	1	0	0	0	4833	1074	38	1	380	1	DTYMK	2	242619704	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	592807	242619704	579669	176	36735										
ITPR1	0	genome.wustl.edu	37	chr3	4726851	4726851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctccggaacatgggcgcgcaCgccgtggtgctggagctgct	16	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	4726851	4726851	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	silent	c.3618	p.H1206	0.003	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	102	0	0	48	8	14.29	-	-	-	T	4726851	C	T	4726851	2	4	341	1	0	0	0	0	0	0	0	1	7974	535	19	1		1	ITPR1	3	4726851	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		4726851	193295579	177	36736										
SLC6A6	0	genome.wustl.edu	37	chr3	14509669	14509669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcgcaattttttccatcctgGgcttcatggcacaagagcaa	8	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	14509669	14509669	G	A	SNP	SLC6A6	ENST00000360861	human	ensembl	69_37n	1	known	missense	c.1045	p.G349S	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389	468	0	0	500	58	10.32	-	-	-	A	14509669	G	A	14509669	3	1	341	1	0	0	0	0	1	0	0	0	14777	1232	43	4	1075	4	SLC6A6	3	14509669	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9782818	14509669	183512761	178	36737										
UBP1	0	genome.wustl.edu	37	chr3	33450984	33450985	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctgagtgtagatgatctgINStgtattctccattttcattc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	33450984	33450985	-	T	INS	UBP1	ENST00000283628	human	ensembl	69_37n	-1	known	frame_shift_ins	c.665_664	p.T222fs	1.000:1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560	174	0	0	43	9	17.31	-	-	-	T	33450985	-	T	33450984	7	5	341	1	0	1	1	0	0	0	0	0	16992	1377	48	0	1001	0	UBP1	3	33450984	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	18941315	33450984	164571446	179	36738										
ITGA9	0	genome.wustl.edu	37	chr3	37584050	37584050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgacttacatggaggagacgTgtcgtcactatgtggcccat	12	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	37584050	37584050	T	C	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	missense	c.1663	p.C555R	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	249	0	0	131	22	14.38	-	-	-	C	37584050	T	C	37584050	3	2	341	1	0	0	0	0	1	0	0	0	7937	1696	59	5	1721	5	ITGA9	3	37584050	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	4133066	37584050	160438380	180	36739										
CCDC13	0	genome.wustl.edu	37	chr3	42777344	42777344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaggtggtgctgggacactCgcgttttctcctcctgcaga	12	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	42777344	42777344	C	T	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	missense	c.1226	p.R409Q	0.005	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	223	0	0	167	27	13.92	-	-	-	T	42777344	C	T	42777344	3	4	341	1	0	0	0	0	1	0	0	0	2790	884	31	1	949	1	CCDC13	3	42777344	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5193294	42777344	155245086	181	36740										
ZNF660	0	genome.wustl.edu	37	chr3	44636312	44636312	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaaagattatggaccatcaGagaattcacactggagagaa	9	7	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	44636312	44636312	G	A	SNP	ZNF660	ENST00000322734	human	ensembl	69_37n	1	known	silent	c.627	p.Q209	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF660	HGNC	ENSG00000144792	112	0	0	93	12	11.32	-	-	-	A	44636312	G	A	44636312	2	1	341	1	0	0	0	0	0	0	0	1	18166	933	33	2		2	ZNF660	3	44636312	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1858968	44636312	153386118	182	36741										
PTPN23	0	genome.wustl.edu	37	chr3	47452997	47452997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acagtaaccgtgtggtgctgCgctcaggcaaggatgactac	13	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	47452997	47452997	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.3709	p.R1237C	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	69	0	0	72	13	15.29	-	-	-	T	47452997	C	T	47452997	3	4	341	1	0	0	0	0	1	0	0	0	12871	768	27	1	3787	1	PTPN23	3	47452997	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2816685	47452997	150569433	183	36742										
SMARCC1	0	genome.wustl.edu	37	chr3	47703959	47703959	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caaaggcccaagggaagcatCtgaattctcaaggtatgggt	12	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	47703959	47703959	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2023	p.D675N	1.000	superfamily_Homeodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	159	0	0	67	29	30.21	-	-	-	T	47703959	C	T	47703959	3	4	341	1	0	0	0	0	1	0	0	0	14864	913	32	2	1330	2	SMARCC1	3	47703959	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	250962	47703959	150318471	184	36743										
COL7A1	0	genome.wustl.edu	37	chr3	48602618	48602618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tattcagagtactcatcatcCtcagggggtacccgctctgc	9	13	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	48602618	48602618	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.8544	p.E2848D	0.945	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	108	0	0	120	21	14.89	-	-	-	A	48602618	C	A	48602618	3	1	341	1	0	0	0	0	1	0	0	0	3734	680	24	4	302	4	COL7A1	3	48602618	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	898659	48602618	149419812	185	36744										
CELSR3	0	genome.wustl.edu	37	chr3	48685787	48685787	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcatactcctccaggtgcctCaccagtcccgcgctgcctgg	10	18	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	48685787	48685787	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	silent	c.6900	p.V2300	0.998	pfam_DUF3497	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	35	0	0	47	27	36.49	-	-	-	T	48685787	C	T	48685787	2	4	341	1	0	0	0	0	0	0	0	1	3252	813	29	2		2	CELSR3	3	48685787	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	83169	48685787	149336643	186	36745										
PRKAR2A	0	genome.wustl.edu	37	chr3	48789671	48789671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgggtttgttggtgaccaggGcaagctctccaaagtactgc	13	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	48789671	48789671	G	A	SNP	PRKAR2A	ENST00000265563	human	ensembl	69_37n	-1	known	missense	c.1019	p.A340V	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2A	HGNC	ENSG00000114302	172	0	0	116	24	17.14	-	-	-	A	48789671	G	A	48789671	3	1	341	1	0	0	0	0	1	0	0	0	12586	1203	42	4	203	4	PRKAR2A	3	48789671	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	103884	48789671	149232759	187	36746										
LAMB2	0	genome.wustl.edu	37	chr3	49160243	49160243	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccagggctgcctgggcccgCtgctgtgcctcgcttgcctg	14	16	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	49160243	49160243	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	silent	c.4467	p.Q1489	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	143	0	0	200	39	16.18	-	-	-	T	49160243	C	T	49160243	2	4	341	1	0	0	0	0	0	0	0	1	8665	796	28	4		4	LAMB2	3	49160243	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	370572	49160243	148862187	188	36747										
IP6K1	0	genome.wustl.edu	37	chr3	49764637	49764637	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcctctgtctggcccatcaTgcacggtggggtcatcccgg	13	14	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	49764637	49764637	T	C	SNP	IP6K1	ENST00000321599	human	ensembl	69_37n	-1	known	missense	c.1244	p.H415R	1.000	pfam_IPK	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095	111	0	0	172	25	12.69	-	-	-	C	49764637	T	C	49764637	3	2	341	1	0	0	0	0	1	0	0	0	7842	1464	51	5	85	5	IP6K1	3	49764637	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	604394	49764637	148257793	189	36748										
DNAH1	0	genome.wustl.edu	37	chr3	52387625	52387625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcaaggtggctgaggtggcTggcaaggagtacgccatcga	17	8	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52387625	52387625	T	C	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.3456	p.A1152	0.374	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	93	0	0	65	11	14.29	-	-	-	C	52387625	T	C	52387625	2	2	341	1	0	0	0	0	0	0	0	1	4633	1567	55	5		5	DNAH1	3	52387625	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2622988	52387625	145634805	190	36749										
DNAH1	0	genome.wustl.edu	37	chr3	52404816	52404816	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagtggcaccaacgacagtgAggatgaagaggaggaataca	14	7	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52404816	52404816	A	G	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.6500	p.E2167G	0.939	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	190	0	0	279	32	10.29	-	-	-	G	52404816	A	G	52404816	3	3	341	1	0	0	0	0	1	0	0	0	4633	304	11	5	6658	5	DNAH1	3	52404816	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	17191	52404816	145617614	191	36750										
NISCH	0	genome.wustl.edu	37	chr3	52522444	52522444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagctgctcgtggggtaccGctttgtcactgccatcttcg	12	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52522444	52522444	G	A	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	missense	c.2936	p.R979H	1.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	78	0	0	118	16	11.94	-	-	-	A	52522444	G	A	52522444	3	1	341	1	0	0	0	0	1	0	0	0	10504	1087	38	1	2998	1	NISCH	3	52522444	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	117628	52522444	145499986	192	36751										
NISCH	0	genome.wustl.edu	37	chr3	52523560	52523560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggcccctgcccagtacccgAgtgagcacctcatccaggcc	10	18	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52523560	52523560	A	C	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	missense	c.3322	p.S1108R	0.934	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	37	0	0	65	9	12.16	-	-	-	C	52523560	A	C	52523560	3	2	341	1	0	0	0	0	1	0	0	0	10504	304	11	5	3388	5	NISCH	3	52523560	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1116	52523560	145498870	193	36752										
STAB1	0	genome.wustl.edu	37	chr3	52541645	52541645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccagggctcctgtgtggactGccaagccctgaacaccagca	11	15	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52541645	52541645	G	A	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.2006	p.C669Y	1.000	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	227	0	0	254	31	10.84	-	-	-	A	52541645	G	A	52541645	3	1	341	1	0	0	0	0	1	0	0	0	15328	1319	46	4	2080	4	STAB1	3	52541645	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	18085	52541645	145480785	194	36753										
NEK4	0	genome.wustl.edu	37	chr3	52780208	52780208	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggatgagaaggcaaaaatcGaggaggcgactcttggaact	15	6	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52780208	52780208	G	A	SNP	NEK4	ENST00000233027	human	ensembl	69_37n	-1	known	nonsense	c.1696	p.R566*	0.014	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904	113	0	0	59	7	10.61	-	-	-	A	52780208	G	A	52780208	4	1	341	1	0	0	0	0	0	1	0	0	10398	1066	37	1	857	1	NEK4	3	52780208	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	238563	52780208	145242222	195	36754										
ITIH3	0	genome.wustl.edu	37	chr3	52833491	52833491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcggctccatggctggtcGgaaattagagcaggtaatca	13	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52833491	52833491	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	69_37n	1	known	missense	c.893	p.R298Q	0.961	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267	215	0	0	224	32	12.5	-	-	-	A	52833491	G	A	52833491	3	1	341	1	0	0	0	0	1	0	0	0	7959	1116	39	1	923	1	ITIH3	3	52833491	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	53283	52833491	145188939	196	36755										
ITIH4	0	genome.wustl.edu	37	chr3	52860575	52860575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accttggtcttattctgccaGgtggtgagggcgtctaccag	13	10	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	52860575	52860575	G	T	SNP	ITIH4	ENST00000441637	human	ensembl	69_37n	-1	novel	missense	c.220	p.L74M	0.000	NULL	pfam_ITI_HC_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITIH4	HGNC	ENSG00000055955	200	0	0	187	28	12.96	-	-	-	T	52860575	G	T	52860575	3	4	341	1	0	0	0	0	1	0	0	0	7960	987	35	4	2260	4	ITIH4	3	52860575	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	27084	52860575	145161855	197	36756										
TKT	0	genome.wustl.edu	37	chr3	53263358	53263358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctcggagatggcggccatgCgaatctggtcaaaggcccgc	14	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	53263358	53263358	C	T	SNP	TKT	ENST00000423525	human	ensembl	69_37n	-1	known	missense	c.1202	p.R401H	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931	80	0	0	132	21	13.73	-	-	-	T	53263358	C	T	53263358	3	4	341	1	0	0	0	0	1	0	0	0	16029	768	27	1	693	1	TKT	3	53263358	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	402783	53263358	144759072	198	36757										
ACTR8	0	genome.wustl.edu	37	chr3	53902823	53902823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcgctgataaatccacagttCctgtgttgtatccaaacaag	7	10	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	53902823	53902823	C	T	SNP	ACTR8	ENST00000335754	human	ensembl	69_37n	-1	known	missense	c.1798	p.E600K	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR8	HGNC	ENSG00000113812	338	0	0	103	16	13.33	-	-	-	T	53902823	C	T	53902823	3	4	341	1	0	0	0	0	1	0	0	0	217	864	30	2	80	2	ACTR8	3	53902823	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	639465	53902823	144119607	199	36758										
DNAH12	0	genome.wustl.edu	37	chr3	57439079	57439079	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caactttcctcttaccagctCtacaatctcattcagttggt	4	13	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	57439079	57439079	C	T	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.3439	p.E1147K	0.994	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	123	0	0	139	38	21.11	-	-	-	T	57439079	C	T	57439079	3	4	341	1	0	0	0	0	1	0	0	0	4636	922	32	2	5983	2	DNAH12	3	57439079	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3536256	57439079	140583351	200	36759										
FLNB	0	genome.wustl.edu	37	chr3	58089788	58089788	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atacagcattgccatcacatGggggggacaccacattccaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	58089788	58089788	G	-	DEL	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	frame_shift_del	c.1586	p.G531fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	59	0	0	23	6	20.69	-	-	-	-	58089788	G	-	58089788	7	5	341	1	0	1	0	1	0	0	0	0	5980	1357	47	0	1624	0	FLNB	3	58089788	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	650709	58089788	139932642	201	36760										
ACOX2	0	genome.wustl.edu	37	chr3	58503000	58503000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgggcaccagacaggaaggCgtcatggagaaagtcacccg	14	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	58503000	58503000	C	T	SNP	ACOX2	ENST00000302819	human	ensembl	69_37n	-1	known	missense	c.1783	p.A595T	1.000	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306	144	1	0.68	49	9	15.25	-	-	-	T	58503000	C	T	58503000	3	4	341	1	0	0	0	0	1	0	0	0	159	768	27	1	274	1	ACOX2	3	58503000	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	413212	58503000	139519430	202	36761										
LRIG1	0	genome.wustl.edu	37	chr3	66463382	66463382	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcttcagcacctccaagctgTtgagcccctggaaggtgagg	13	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	66463382	66463382	T	A	SNP	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	missense	c.704	p.N235I	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	244	0	0	325	60	15.58	-	-	-	A	66463382	T	A	66463382	3	1	341	1	0	0	0	0	1	0	0	0	9010	1725	60	5	2633	5	LRIG1	3	66463382	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	7960382	66463382	131559048	203	36762										
CNTN3	0	genome.wustl.edu	37	chr3	74385798	74385799	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttgagtcctccatcgtttaINSacaaagaaattctaaagcaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	74385798	74385799	-	T	INS	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1376_1375	p.L459fs	0.048:0.002	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	83	0	0	15	2	11.76	-	-	-	T	74385799	-	T	74385798	7	5	341	1	0	1	1	0	0	0	0	0	3672	372	13	0	1758	0	CNTN3	3	74385798	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	7922416	74385798	123636632	204	36763										
TBC1D23	0	genome.wustl.edu	37	chr3	100009479	100009479	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggttgctcatccaataccaTgagcctgagctttgttctta	8	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	100009479	100009479	T	C	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	silent	c.534	p.H178	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	114	0	0	38	5	11.63	-	-	-	C	100009479	T	C	100009479	2	2	341	1	0	0	0	0	0	0	0	1	15705	1461	51	5		5	TBC1D23	3	100009479	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	25623681	100009479	98012951	205	36764										
TMPRSS7	0	genome.wustl.edu	37	chr3	111795764	111795764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gactgcacacctcgggatgtAtgttcaggggaatgccaagt	13	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	111795764	111795764	A	G	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	missense	c.1619	p.Y540C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	396	0	0	166	23	12.17	-	-	-	G	111795764	A	G	111795764	3	3	341	1	0	0	0	0	1	0	0	0	16347	449	16	5	1669	5	TMPRSS7	3	111795764	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	11786285	111795764	86226666	206	36765										
ARHGAP31	0	genome.wustl.edu	37	chr3	119134691	119134691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccacccaggatgcagtagtGcaatgcagaaagcgcatgtc	11	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	119134691	119134691	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	silent	c.3915	p.V1305	0.994	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	124	0	0	28	9	24.32	-	-	-	A	119134691	G	A	119134691	2	1	341	1	0	0	0	0	0	0	0	1	882	1306	46	4		4	ARHGAP31	3	119134691	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7338927	119134691	78887739	207	36766										
POPDC2	0	genome.wustl.edu	37	chr3	119367264	119367264	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcacagacttcctcatcaccCttctcggactctggtccagc	6	17	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	119367264	119367264	C	A	SNP	POPDC2	ENST00000341124	human	ensembl	69_37n	-1	known	missense	c.852	p.K284N	0.998	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577	328	0	0	260	34	11.56	-	-	-	A	119367264	C	A	119367264	3	1	341	1	0	0	0	0	1	0	0	0	12329	680	24	4	250	4	POPDC2	3	119367264	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	232573	119367264	78655166	208	36767										
FSTL1	0	genome.wustl.edu	37	chr3	120130714	120130714	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accttacctttgcagtgtccAtcgtaatcaacctggatttt	6	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	120130714	120130714	A	G	SNP	FSTL1	ENST00000295633	human	ensembl	69_37n	-1	known	silent	c.285	p.D95	0.953	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pfscan_EF_HAND_2	-	no_errors	FSTL1	HGNC	ENSG00000163430	326	0	0	357	48	11.85	-	-	-	G	120130714	A	G	120130714	2	3	341	1	0	0	0	0	0	0	0	1	6126	214	8	5		5	FSTL1	3	120130714	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	763450	120130714	77891716	209	36768										
PDIA5	0	genome.wustl.edu	37	chr3	122842972	122842972	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacatcaaggaggagtacagCgtgcgcggcttccccaccat	11	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	122842972	122842972	C	T	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	silent	c.669	p.S223	0.511	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	115	1	0.86	67	41	37.96	-	-	-	T	122842972	C	T	122842972	2	4	341	1	0	0	0	0	0	0	0	1	11744	767	27	1		1	PDIA5	3	122842972	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2712258	122842972	75179458	210	36769										
HEG1	0	genome.wustl.edu	37	chr3	124732118	124732118	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtttgactactatggagcaTtgtcatgaatgatgtcattg	10	5	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	124732118	124732118	T	C	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.2305	p.M769V	0.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	322	0	0	205	36	14.94	-	-	-	C	124732118	T	C	124732118	3	2	341	1	0	0	0	0	1	0	0	0	7095	1493	52	5	1888	5	HEG1	3	124732118	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1889146	124732118	73290312	211	36770										
KLF15	0	genome.wustl.edu	37	chr3	126071369	126071369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggctggaagggccgtgggaCgtcatcaggatcacccaaag	15	10	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	126071369	126071369	C	T	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.397	p.V133I	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	37	0	0	53	9	14.52	-	-	-	T	126071369	C	T	126071369	3	4	341	1	0	0	0	0	1	0	0	0	8396	536	19	1	861	1	KLF15	3	126071369	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1339251	126071369	71951061	212	36771										
MCM2	0	genome.wustl.edu	37	chr3	127336831	127336831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagggcgctacgacccctcGctgactttctctgagaacgt	12	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	127336831	127336831	G	A	SNP	MCM2	ENST00000491422	human	ensembl	69_37n	1	novel	missense	c.1715	p.R572H	0.023	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_2,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MCM2	HGNC	ENSG00000073111	151	0	0	191	28	12.73	-	-	-	A	127336831	G	A	127336831	3	1	341	1	0	0	0	0	1	0	0	0	9457	1074	38	1	1966	1	MCM2	3	127336831	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1265462	127336831	70685599	213	36772										
KIAA1257	0	genome.wustl.edu	37	chr3	128690194	128690194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcttcctggggcctgtcagCgtggggtctgcctcttcttc	13	13	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	128690194	128690194	C	T	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	silent	c.1104	p.T368	0.000	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	320	0	0	186	49	20.85	-	-	-	T	128690194	C	T	128690194	2	4	341	1	0	0	0	0	0	0	0	1	8270	755	27	1		1	KIAA1257	3	128690194	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1353363	128690194	69332236	214	36773										
ATP2C1	0	genome.wustl.edu	37	chr3	130653488	130653488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taaaaatccccttattatgcTgcttctggcttctgcagtca	6	11	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	130653488	130653488	T	C	SNP	ATP2C1	ENST00000393221	human	ensembl	69_37n	1	known	missense	c.359	p.L120P	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C1	HGNC	ENSG00000017260	199	0	0	141	16	10.19	-	-	-	C	130653488	T	C	130653488	3	2	341	1	0	0	0	0	1	0	0	0	1147	1580	55	5	271	5	ATP2C1	3	130653488	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1963294	130653488	67368942	215	36774										
DNAJC13	0	genome.wustl.edu	37	chr3	132196903	132196903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagtgtttatgtttacaagcCcttgctattgtttatggcag	9	6	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	132196903	132196903	C	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	silent	c.2628	p.A876	0.941	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	98	0	0	91	13	12.5	-	-	-	T	132196903	C	T	132196903	2	4	341	1	0	0	0	0	0	0	0	1	4667	610	22	4		4	DNAJC13	3	132196903	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1543415	132196903	65825527	216	36775										
SLCO2A1	0	genome.wustl.edu	37	chr3	133673861	133673861	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagtcatccacataggagaTcccaaatggctgaataggca	10	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	133673861	133673861	T	C	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.574	p.I192V	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	129	0	0	90	10	10	-	-	-	C	133673861	T	C	133673861	3	2	341	1	0	0	0	0	1	0	0	0	14815	1435	50	5	1401	5	SLCO2A1	3	133673861	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1476958	133673861	64348569	217	36776										
ZBTB38	0	genome.wustl.edu	37	chr3	141162773	141162773	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttggcatacgggagaaagaCgatatcagtgcattttctgt	11	6	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	141162773	141162773	C	T	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	nonsense	c.1546	p.R516*	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	101	0	0	32	4	11.11	-	-	-	T	141162773	C	T	141162773	4	4	341	1	0	0	0	0	0	1	0	0	17635	528	19	1	1545	1	ZBTB38	3	141162773	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7488912	141162773	56859657	218	36777										
PLOD2	0	genome.wustl.edu	37	chr3	145788886	145788886	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggtaaatgtagaagcatcAtgatgaggacgaagagaacg	13	4	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	145788886	145788886	A	G	SNP	PLOD2	ENST00000282903	human	ensembl	69_37n	-1	known	silent	c.2064	p.H688	0.899	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	206	0	0	46	8	14.81	-	-	-	G	145788886	A	G	145788886	2	3	341	1	0	0	0	0	0	0	0	1	12176	214	8	5		5	PLOD2	3	145788886	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4626113	145788886	52233544	219	36778										
CPB1	0	genome.wustl.edu	37	chr3	148558714	148558714	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatccagccctcatctctcgCagtgttatcggaaccacatt	6	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	148558714	148558714	C	T	SNP	CPB1	ENST00000282957	human	ensembl	69_37n	1	known	silent	c.426	p.R142	0.008	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002	226	0	0	51	12	19.05	-	-	-	T	148558714	C	T	148558714	2	4	341	1	0	0	0	0	0	0	0	1	3826	697	25	4		4	CPB1	3	148558714	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2769828	148558714	49463716	220	36779										
CP	0	genome.wustl.edu	37	chr3	148917532	148917532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttgtaatttggggaatagtAtgtgccctcgttgttcttat	11	5	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	148917532	148917532	A	G	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.1468	p.Y490H	0.011	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	454	0	0	125	21	14.19	-	-	-	G	148917532	A	G	148917532	3	3	341	1	0	0	0	0	1	0	0	0	3817	449	16	5	1777	5	CP	3	148917532	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	358818	148917532	49104898	221	36780										
MED12L	0	genome.wustl.edu	37	chr3	151131006	151131006	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgacttctgcacatccaaacCttccctccgtgcccctgcct	5	19	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	151131006	151131006	C	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.6115	p.L2039I	0.962	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	121	0	0	47	8	14.55	-	-	-	A	151131006	C	A	151131006	3	1	341	1	0	0	0	0	1	0	0	0	9500	681	24	4	6273	4	MED12L	3	151131006	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2213474	151131006	46891424	222	36781										
WDR49	0	genome.wustl.edu	37	chr3	167277883	167277883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catctgtgctgccagtcaaaAgccgagtctcatttgcatca	8	12	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	167277883	167277883	A	C	SNP	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	missense	c.620	p.L207R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	290	1	0.34	91	11	10.78	-	-	-	C	167277883	A	C	167277883	3	2	341	1	0	0	0	0	1	0	0	0	17399	72	3	5	1517	5	WDR49	3	167277883	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	16146877	167277883	30744547	223	36782										
SLC2A2	0	genome.wustl.edu	37	chr3	170716096	170716097	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaaactcagccaccatgaacINScaggggatcgggcctggccc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	170716096	170716097	-	T	INS	SLC2A2	ENST00000314251	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1260_1259	p.W420fs	1.000:1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	56	0	0	6	2	25	-	-	-	T	170716097	-	T	170716096	7	5	341	1	0	1	1	0	0	0	0	0	14633	508	18	0	322	0	SLC2A2	3	170716096	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3438213	170716096	27306334	224	36783										
ACTL6A	0	genome.wustl.edu	37	chr3	179298440	179298440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actcacagtgtgttatccagGattttcaagcttcggtactt	8	9	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	179298440	179298440	G	A	SNP	ACTL6A	ENST00000429709	human	ensembl	69_37n	1	known	missense	c.781	p.D261N	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6A	HGNC	ENSG00000136518	143	0	0	57	21	26.92	-	-	-	A	179298440	G	A	179298440	3	1	341	1	0	0	0	0	1	0	0	0	198	1174	41	2	815	2	ACTL6A	3	179298440	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	8582344	179298440	18723990	225	36784										
USP13	0	genome.wustl.edu	37	chr3	179483613	179483613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgaggccaagcccgaaggacCtagagtcaaggatggatctg	14	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	179483613	179483613	C	A	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	missense	c.2390	p.P797H	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	224	0	0	121	15	10.95	-	-	-	A	179483613	C	A	179483613	3	1	341	1	0	0	0	0	1	0	0	0	17141	681	24	4	2464	4	USP13	3	179483613	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	185173	179483613	18538817	226	36785										
LAMP3	0	genome.wustl.edu	37	chr3	182871645	182871645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggtattgtgggcagctgccGttgttcctggggcatgggtg	18	7	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	182871645	182871645	G	A	SNP	LAMP3	ENST00000265598	human	ensembl	69_37n	-1	known	missense	c.584	p.T195M	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	526	0	0	399	49	10.86	-	-	-	A	182871645	G	A	182871645	3	1	341	1	0	0	0	0	1	0	0	0	8673	1145	40	1	686	1	LAMP3	3	182871645	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3388032	182871645	15150785	227	36786										
DVL3	0	genome.wustl.edu	37	chr3	183888225	183888225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcggaccacaccacacgcagCagcctgcgggggccgcggga	15	16	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	183888225	183888225	C	T	SNP	DVL3	ENST00000313143	human	ensembl	69_37n	1	known	silent	c.1833	p.S611	1.000	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled,prints_Dishevelled_3,prints_Dishevelled_1	-	no_errors	DVL3	HGNC	ENSG00000161202	14	0	0	39	10	20.41	-	-	-	T	183888225	C	T	183888225	2	4	341	1	0	0	0	0	0	0	0	1	4872	709	25	4		4	DVL3	3	183888225	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1016580	183888225	14134205	228	36787										
ABCF3	0	genome.wustl.edu	37	chr3	183904018	183904018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcgacttgcgccgaaatccTgcggagcgagttccccgaaa	13	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	183904018	183904018	T	C	SNP	ABCF3	ENST00000429586	human	ensembl	69_37n	1	known	missense	c.23	p.L8P	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204	63	0	0	103	18	14.88	-	-	-	C	183904018	T	C	183904018	3	2	341	1	0	0	0	0	1	0	0	0	67	1580	55	5	25	5	ABCF3	3	183904018	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	15793	183904018	14118412	229	36788										
EPHB3	0	genome.wustl.edu	37	chr3	184299396	184299396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcagatgaaccagacgctgCctgtgcaggtctgacaccgg	13	12	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	184299396	184299396	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	missense	c.2983	p.P995S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_SAM/pointed	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	52	0	0	97	14	12.61	-	-	-	T	184299396	C	T	184299396	3	4	341	1	0	0	0	0	1	0	0	0	5213	739	26	4	3045	4	EPHB3	3	184299396	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	395378	184299396	13723034	230	36789										
IGF2BP2	0	genome.wustl.edu	37	chr3	185407411	185407411	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgcccgcttagcttctccaTggctctgaaatgcagcagga	10	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	185407411	185407411	T	C	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	missense	c.409	p.M137V	0.958	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	37	0	0	29	4	11.76	-	-	-	C	185407411	T	C	185407411	3	2	341	1	0	0	0	0	1	0	0	0	7628	1464	51	5	1434	5	IGF2BP2	3	185407411	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1108015	185407411	12615019	231	36790										
MUC4	0	genome.wustl.edu	37	chr3	195516770	195516770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccattgtgtctgggcgcctgCccctgttgtttttgggagag	14	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	195516770	195516770	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.1681	p.A561T	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	113	0	0	189	29	13.3	-	-	-	T	195516770	C	T	195516770	3	4	341	1	0	0	0	0	1	0	0	0	10050	739	26	4		4	MUC4	3	195516770	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	10109359	195516770	2505660	232	36791										
MFI2	0	genome.wustl.edu	37	chr3	196736542	196736542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcctctctgaataagggcaCccacggggacatcccagcct	10	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	3	196736542	196736542	C	T	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.1472	p.G491D	0.994	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	45	0	0	73	10	12.05	-	-	-	T	196736542	C	T	196736542	3	4	341	1	0	0	0	0	1	0	0	0	9593	507	18	4	768	4	MFI2	3	196736542	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1219772	196736542	1285888	233	36792										
PDE6B	0	genome.wustl.edu	37	chr4	655933	655933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctcccccaggtcctggtgcGgttcctgttctccatcagca	10	16	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	655933	655933	G	A	SNP	PDE6B	ENST00000496514	human	ensembl	69_37n	1	known	missense	c.1625	p.R542Q	0.999	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256	71	0	0	112	20	15.04	-	-	-	A	655933	G	A	655933	3	1	341	1	0	0	0	0	1	0	0	0	11719	1116	39	1	1675	1	PDE6B	4	655933	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		655933	190498343	234	36793										
DOK7	0	genome.wustl.edu	37	chr4	3478250	3478250	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcggattcatctttgaaggCgggaccaggtgtgggtactg	16	7	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	3478250	3478250	C	G	SNP	DOK7	ENST00000389653	human	ensembl	69_37n	1	known	silent	c.513	p.G171	0.996	pfam_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK7	HGNC	ENSG00000175920	155	0	0	209	33	13.58	-	-	-	G	3478250	C	G	3478250	2	3	341	1	0	0	0	0	0	0	0	1	4737	755	27	3		3	DOK7	4	3478250	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2822317	3478250	187676026	235	36794										
JAKMIP1	0	genome.wustl.edu	37	chr4	6083470	6083470	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagctgaacctcggtctctcGtgagcgtttcagctgtggtt	12	11	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	6083470	6083470	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	69_37n	-1	known	nonsense	c.967	p.R323*	0.962	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969	165	0	0	89	37	29.13	-	-	-	A	6083470	G	A	6083470	4	1	341	1	0	0	0	0	0	1	0	0	7994	1153	40	1	1667	1	JAKMIP1	4	6083470	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2605220	6083470	185070806	236	36795										
MAN2B2	0	genome.wustl.edu	37	chr4	6610948	6610948	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcacaccgggcaaggccgcGgtgcctgcgtgggaagctgt	16	12	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	6610948	6610948	G	A	SNP	MAN2B2	ENST00000505907	human	ensembl	69_37n	1	known	missense	c.1925	p.R642Q	0.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2B2	HGNC	ENSG00000013288	302	0	0	327	50	13.26	-	-	-	A	6610948	G	A	6610948	3	1	341	1	0	0	0	0	1	0	0	0	9288	1103	39	1	1975	1	MAN2B2	4	6610948	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	527478	6610948	184543328	237	36796										
MAN2B2	0	genome.wustl.edu	37	chr4	6619136	6619136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggaagcccaggctgacctcCgccgtgtcctgctgcggctc	14	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	6619136	6619136	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	missense	c.2731	p.R911C	0.003	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	104	0	0	131	17	11.41	-	-	-	T	6619136	C	T	6619136	3	4	341	1	0	0	0	0	1	0	0	0	9288	652	23	1	2797	1	MAN2B2	4	6619136	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	8188	6619136	184535140	238	36797										
SORCS2	0	genome.wustl.edu	37	chr4	7728554	7728554	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaacgcggttttcggacacGggcgacgtgcgtgtgacggt	16	10	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	7728554	7728554	G	A	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	1	known	silent	c.2793	p.T931	0.000	superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	167	0	0	173	29	14.36	-	-	-	A	7728554	G	A	7728554	2	1	341	1	0	0	0	0	0	0	0	1	15020	1103	39	1		1	SORCS2	4	7728554	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1109418	7728554	183425722	239	36798										
SH3TC1	0	genome.wustl.edu	37	chr4	8211494	8211494	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacgaggctcctcctgcccgCgtggctgggcctgctgctgg	16	15	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	8211494	8211494	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	silent	c.192	p.R64	0.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	49	0	0	61	9	12.68	-	-	-	T	8211494	C	T	8211494	2	4	341	1	0	0	0	0	0	0	0	1	14350	755	27	1		1	SH3TC1	4	8211494	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	482940	8211494	182942782	240	36799										
ARAP2	0	genome.wustl.edu	37	chr4	36149338	36149339	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaatcatagtcagcttctgtINStaagttttcagcaaataagg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	36149338	36149339	-	A	INS	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3031_3030	p.T1010fs	1.000:1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	96	0	0	16	3	15.79	-	-	-	A	36149339	-	A	36149338	7	5	341	1	0	1	1	0	0	0	0	0	841	1725	60	0	2147	0	ARAP2	4	36149338	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	27937844	36149338	155004938	241	36800										
WDR19	0	genome.wustl.edu	37	chr4	39276470	39276470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aactgtgattgagtgtcacaGggcaggcctgaagaactctg	13	8	2	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	39276470	39276470	G	T	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	missense	c.3608	p.R1203M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	286	0	0	154	19	10.92	-	-	-	T	39276470	G	T	39276470	3	4	341	1	0	0	0	0	1	0	0	0	17376	1000	35	4	3738	4	WDR19	4	39276470	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3127132	39276470	151877806	242	36801										
GABRG1	0	genome.wustl.edu	37	chr4	46053450	46053450	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttttaacataccgaggctttAttttttagctttctgtcttt	5	7	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	46053450	46053450	A	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.1122	p.N374K	0.000	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	43	0	0	11	5	31.25	-	-	-	C	46053450	A	C	46053450	3	2	341	1	0	0	0	0	1	0	0	0	6220	446	16	5	283	5	GABRG1	4	46053450	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6776980	46053450	145100826	243	36802										
FRYL	0	genome.wustl.edu	37	chr4	48566994	48566994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttatccaaccatttgtacaAatagccatctgatgaaagtc	6	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	48566994	48566994	A	G	SNP	FRYL	ENST00000514617	human	ensembl	69_37n	-1	novel	missense	c.8	p.F3S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRYL	HGNC	ENSG00000075539	167	0	0	52	16	23.53	-	-	-	G	48566994	A	G	48566994	3	3	341	1	0	0	0	0	1	0	0	0	6113	11	1	5	5784	5	FRYL	4	48566994	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2513544	48566994	142587282	244	36803										
KIT	0	genome.wustl.edu	37	chr4	55565802	55565803	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttttcattctagccttcaaINSagctgtgcctgttgtgtctg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	55565802	55565803	-	T	INS	KIT	ENST00000288135	human	ensembl	69_37n	1	known	frame_shift_ins	c.626_627	p.K209fs	0.514:0.209	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	178	0	0	36	4	10	-	-	-	T	55565803	-	T	55565802	7	5	341	1	0	1	1	0	0	0	0	0	8382	14	1	0	640	0	KIT	4	55565802	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	6998808	55565802	135588474	245	36804										
MUC7	0	genome.wustl.edu	37	chr4	71346953	71346953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aattccccagctccacaagaCaccacagctgccccacccac	4	21	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	71346953	71346953	C	G	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	missense	c.492	p.D164E	0.003	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	837	0	0	454	55	10.78	-	-	-	G	71346953	C	G	71346953	3	3	341	1	0	0	0	0	1	0	0	0	10053	477	17	4	498	4	MUC7	4	71346953	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	15781151	71346953	119807323	246	36805										
MUC7	0	genome.wustl.edu	37	chr4	71347363	71347363	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accgtcttccccagctccacAagagaccacagctgccccaa	6	19	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	71347363	71347363	A	C	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	missense	c.902	p.Q301P	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	1072	6	0.56	758	145	16	-	-	-	C	71347363	A	C	71347363	3	2	341	1	0	0	0	0	1	0	0	0	10053	130	5	5	908	5	MUC7	4	71347363	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	410	71347363	119806913	247	36806										
ENAM	0	genome.wustl.edu	37	chr4	71510090	71510090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttcccttcaatcaaagaatAcaccttgtctcaaaaatgat	4	10	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	71510090	71510090	A	G	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.2947	p.T983A	0.032	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	76	0	0	13	3	18.75	-	-	-	G	71510090	A	G	71510090	3	3	341	1	0	0	0	0	1	0	0	0	5149	391	14	5	2977	5	ENAM	4	71510090	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	162727	71510090	119644186	248	36807										
CXCL2	0	genome.wustl.edu	37	chr4	74964822	74964822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attgctgggggcggcggagaGcgtggcgcgggccatggggc	23	9	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	74964822	74964822	G	A	SNP	CXCL2	ENST00000508487	human	ensembl	69_37n	-1	known	missense	c.16	p.L6F	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	CXCL2	HGNC	ENSG00000081041	44	0	0	64	16	20	-	-	-	A	74964822	G	A	74964822	3	1	341	1	0	0	0	0	1	0	0	0	4116	971	34	4	323	4	CXCL2	4	74964822	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3454732	74964822	116189454	249	36808										
FRAS1	0	genome.wustl.edu	37	chr4	79291043	79291043	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaggccagctgtacctcctGccgagatccaaacaaggttc	9	14	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	79291043	79291043	G	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.2774	p.C925F	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	302	0	0	42	5	10.64	-	-	-	T	79291043	G	T	79291043	3	4	341	1	0	0	0	0	1	0	0	0	6090	1319	46	4	2864	4	FRAS1	4	79291043	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4326221	79291043	111863233	250	36809										
HELQ	0	genome.wustl.edu	37	chr4	84375038	84375038	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caggtcgtcaacttgagctaTaaaggagttttcagtaaagc	10	7	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	84375038	84375038	T	C	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.358	p.I120V	0.347	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	225	0	0	97	19	16.24	-	-	-	C	84375038	T	C	84375038	3	2	341	1	0	0	0	0	1	0	0	0	7098	1406	49	5	3015	5	HELQ	4	84375038	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5083995	84375038	106779238	251	36810										
AGPAT9	0	genome.wustl.edu	37	chr4	84457806	84457806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagagctggccgggaagatcCtttccacctggctgacgctg	13	13	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	84457806	84457806	C	A	SNP	AGPAT9	ENST00000264409	human	ensembl	69_37n	1	known	missense	c.31	p.L11I	0.786	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT9	HGNC	ENSG00000138678	77	0	0	124	31	20	-	-	-	A	84457806	C	A	84457806	3	1	341	1	0	0	0	0	1	0	0	0	392	681	24	4	33	4	AGPAT9	4	84457806	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	82768	84457806	106696470	252	36811										
AFF1	0	genome.wustl.edu	37	chr4	88052236	88052236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccatgttcttctcctgcagaCggacagggttggaaaggctt	12	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	88052236	88052236	C	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.2966	p.T989M	0.752	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	279	1	0.36	49	8	14.04	-	-	-	T	88052236	C	T	88052236	3	4	341	1	0	0	0	0	1	0	0	0	356	550	19	1	3049	1	AFF1	4	88052236	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3594430	88052236	103102040	253	36812										
DSPP	0	genome.wustl.edu	37	chr4	88533962	88533962	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aattcctgtagaaacgagggTaatacaagtgaaataacacc	8	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	88533962	88533962	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.624	p.G208	0.000	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	165	0	0	39	11	22	-	-	-	C	88533962	T	C	88533962	2	2	341	1	0	0	0	0	0	0	0	1	4817	1625	57	5		5	DSPP	4	88533962	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	481726	88533962	102620314	254	36813										
PPP3CA	0	genome.wustl.edu	37	chr4	101953498	101953498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttggggtcaagcctttcagcGtcagcacactctcactctct	8	14	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	101953498	101953498	G	A	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.1265	p.T422M	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	190	0	0	30	11	26.83	-	-	-	A	101953498	G	A	101953498	3	1	341	1	0	0	0	0	1	0	0	0	12474	1145	40	1	312	1	PPP3CA	4	101953498	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	13419536	101953498	89200778	255	36814										
BBS7	0	genome.wustl.edu	37	chr4	122749602	122749602	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcttagccaaaagcaactgGtactccagctttgggtggat	10	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	122749602	122749602	G	A	SNP	BBS7	ENST00000264499	human	ensembl	69_37n	-1	known	silent	c.1845	p.Y615	1.000	pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686	200	0	0	159	32	16.75	-	-	-	A	122749602	G	A	122749602	2	1	341	1	0	0	0	0	0	0	0	1	1345	1256	44	4		4	BBS7	4	122749602	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	20796104	122749602	68404674	256	36815										
SLC25A31	0	genome.wustl.edu	37	chr4	128694625	128694625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggaatcagttccttttttCgtggcgccttctccaatgtt	8	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	128694625	128694625	C	T	SNP	SLC25A31	ENST00000281154	human	ensembl	69_37n	1	known	missense	c.844	p.R282C	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,prints_Aden_trnslctor,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A31	HGNC	ENSG00000151475	326	1	0.31	167	53	24.09	-	-	-	T	128694625	C	T	128694625	3	4	341	1	0	0	0	0	1	0	0	0	14584	884	31	1	866	1	SLC25A31	4	128694625	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5945023	128694625	62459651	257	36816										
SETD7	0	genome.wustl.edu	37	chr4	140468117	140468117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccccgtccgttcttttctcCgtgaacaaagttcccctcaa	5	17	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	140468117	140468117	C	T	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	missense	c.127	p.G43R	1.000	pfam_MORN,pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	134	0	0	71	17	19.32	-	-	-	T	140468117	C	T	140468117	3	4	341	1	0	0	0	0	1	0	0	0	14224	661	23	1	1001	1	SETD7	4	140468117	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	11773492	140468117	50686159	258	36817										
DCLK2	0	genome.wustl.edu	37	chr4	151119189	151119189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtcatcttattctcgatccTcagctgttaagtattctgga	7	9	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	151119189	151119189	T	C	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	missense	c.895	p.S299P	0.898	superfamily_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	196	0	0	30	4	11.76	-	-	-	C	151119189	T	C	151119189	3	2	341	1	0	0	0	0	1	0	0	0	4323	1551	54	5	909	5	DCLK2	4	151119189	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	10651072	151119189	40035087	259	36818										
SH3RF1	0	genome.wustl.edu	37	chr4	170038689	170038689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttacctgtcctcacagcatTgcgggcctggttgactgtca	10	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	170038689	170038689	T	C	SNP	SH3RF1	ENST00000284637	human	ensembl	69_37n	-1	known	missense	c.1762	p.N588D	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447	147	1	0.68	103	21	16.94	-	-	-	C	170038689	T	C	170038689	3	2	341	1	0	0	0	0	1	0	0	0	14347	1812	63	5	920	5	SH3RF1	4	170038689	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	18919500	170038689	21115587	260	36819										
WDR17	0	genome.wustl.edu	37	chr4	177095863	177095863	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttccagcactttatgagtAcacaaggtaaaaaaggtttt	8	6	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	177095863	177095863	A	G	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.3560	p.Y1187C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	229	0	0	99	13	11.61	-	-	-	G	177095863	A	G	177095863	3	3	341	1	0	0	0	0	1	0	0	0	17374	391	14	5	3666	5	WDR17	4	177095863	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	7057174	177095863	14058413	261	36820										
ODZ3	0	genome.wustl.edu	37	chr4	183522272	183522272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acccgagtccgtccagctgcAggacagctgggtccttggca	13	14	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	183522272	183522272	A	G	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.707	p.Q236R	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	28	0	0	55	8	12.5	-	-	-	G	183522272	A	G	183522272	3	3	341	1	0	0	0	0	1	0	0	0	10909	188	7	5	717	5	ODZ3	4	183522272	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6426409	183522272	7632004	262	36821										
ODZ3	0	genome.wustl.edu	37	chr4	183658075	183658075	+	Missense_Mutation	SNP	C	C	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccatgacccagtctattattCcatttaatttaatgaaggtt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	183658075	183658075	C	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.3082	p.P1028T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	103	0	0	22	5	18.52	-	-	-	A	183658075	C	A	183658075	3	1	341	1	0	0	0	0	1	0	0	0	10909	855	30	2	3144	2	ODZ3	4	183658075	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	135803	183658075	7496201	263	36822	300	2								
ODZ3	0	genome.wustl.edu	37	chr4	183658078	183658078	+	Missense_Mutation	SNP	T	T	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgacccagtctattattccaTttaatttaatgaaggttcat							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	183658078	183658078	T	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.3085	p.F1029I	0.999	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	105	0	0	21	6	22.22	-	-	-	A	183658078	T	A	183658078	3	1	341	1	0	0	0	0	1	0	0	0	10909	1493	52	5	3147	5	ODZ3	4	183658078	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3	183658078	7496198	264	36823	300	2								
ODZ3	0	genome.wustl.edu	37	chr4	183714430	183714430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttcctacgtcaaaggggcaCggaaatctttgaatatagct	9	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	4	183714430	183714430	C	T	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.6605	p.T2202M	0.998	superfamily_Cyt_c_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	166	0	0	105	35	25	-	-	-	T	183714430	C	T	183714430	3	4	341	1	0	0	0	0	1	0	0	0	10909	536	19	1	6703	1	ODZ3	4	183714430	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	56352	183714430	7439846	265	36824										
SLC6A3	0	genome.wustl.edu	37	chr5	1432589	1432589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccacttactcaaagtactCggcagcaggtgtggtcccaa	9	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	1432589	1432589	C	T	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	missense	c.643	p.E215K	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	117	0	0	174	29	14.29	-	-	-	T	1432589	C	T	1432589	3	4	341	1	0	0	0	0	1	0	0	0	14774	893	31	1	1267	1	SLC6A3	5	1432589	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		1432589	179482671	266	36825										
ADCY2	0	genome.wustl.edu	37	chr5	7414700	7414700	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctcaggaagttgaagaccaTgtggcgtttctaataacagt	10	8	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	7414700	7414700	T	C	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.225	p.H75	0.792	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	292	0	0	332	77	18.83	-	-	-	C	7414700	T	C	7414700	2	2	341	1	0	0	0	0	0	0	0	1	294	1461	51	5		5	ADCY2	5	7414700	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5982111	7414700	173500560	267	36826										
TRIO	0	genome.wustl.edu	37	chr5	14481719	14481719	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgaacgtggggcggctgcaaGgattcgacgtaatgcggctc	16	9	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	14481719	14481719	G	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	nonsense	c.6457	p.G2153*	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	265	1	0.38	253	29	10.25	-	-	-	T	14481719	G	T	14481719	4	4	341	1	0	0	0	0	0	1	0	0	16648	1001	35	4	6635	4	TRIO	5	14481719	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7067019	14481719	166433541	268	36827										
NIPBL	0	genome.wustl.edu	37	chr5	36976100	36976100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acttacattaagactttctcGtgtaaggtcttcagacatgg	8	8	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	36976100	36976100	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.1091	p.R364H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	155	0	0	34	6	15	-	-	-	A	36976100	G	A	36976100	3	1	341	1	0	0	0	0	1	0	0	0	10500	1145	40	1	1121	1	NIPBL	5	36976100	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	22494381	36976100	143939160	269	36828										
C5orf42	0	genome.wustl.edu	37	chr5	37176052	37176052	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctacttgcattgattgaggAgtggtatgcccaggatgtga	13	6	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	37176052	37176052	A	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	silent	c.5937	p.T1979	0.153	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	227	0	0	63	10	13.7	-	-	-	G	37176052	A	G	37176052	2	3	341	1	0	0	0	0	0	0	0	1	2322	291	11	5		5	C5orf42	5	37176052	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	199952	37176052	143739208	270	36829										
C5orf42	0	genome.wustl.edu	37	chr5	37181009	37181009	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccatttctttcctcagttccAcctggagttgctactgcaac	6	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	37181009	37181009	A	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	silent	c.5520	p.G1840	0.001	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	111	0	0	32	10	22.73	-	-	-	G	37181009	A	G	37181009	2	3	341	1	0	0	0	0	0	0	0	1	2322	146	6	5		5	C5orf42	5	37181009	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4957	37181009	143734251	271	36830										
HEATR7B2	0	genome.wustl.edu	37	chr5	41018805	41018805	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctactcacattaaacatttcTtgacagtcctctgcattcac	3	13	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	41018805	41018805	T	C	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.2661	p.Q887	0.013	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	107	0	0	35	12	25.53	-	-	-	C	41018805	T	C	41018805	2	2	341	1	0	0	0	0	0	0	0	1	7086	1606	56	5		5	HEATR7B2	5	41018805	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3837796	41018805	139896455	272	36831										
ARL15	0	genome.wustl.edu	37	chr5	53467694	53467694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgccagaacctgtgaggcctAtgcaaaccaggtcatattct	9	11	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	53467694	53467694	A	G	SNP	ARL15	ENST00000504924	human	ensembl	69_37n	-1	known	missense	c.113	p.I38T	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL15	HGNC	ENSG00000185305	205	0	0	32	7	17.95	-	-	-	G	53467694	A	G	53467694	3	3	341	1	0	0	0	0	1	0	0	0	933	449	16	5	517	5	ARL15	5	53467694	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	12448889	53467694	127447566	273	36832										
ARL15	0	genome.wustl.edu	37	chr5	53606316	53606316	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggagatcagacatccggcaGcctaaagcatccggaacggc	12	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	53606316	53606316	G	A	SNP	ARL15	ENST00000502271	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARL15	HGNC	ENSG00000185305	52	0	0	85	23	21.3	-	-	-	A	53606316	G	A	53606316	1	1	341	0	1	0	0	0	0	0	0	0	933	986	34	4		4	ARL15	5	53606316	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	138622	53606316	127308944	274	36833										
BDP1	0	genome.wustl.edu	37	chr5	70806220	70806220	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgaaagagaaatatccccaCaggaaaatggcctagaggag	11	8	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	70806220	70806220	C	G	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.3301	p.Q1101E	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	43	0	0	16	5	23.81	-	-	-	G	70806220	C	G	70806220	3	3	341	1	0	0	0	0	1	0	0	0	1399	479	17	4	3367	4	BDP1	5	70806220	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	17199904	70806220	110109040	275	36834										
DMGDH	0	genome.wustl.edu	37	chr5	78351646	78351646	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttacctgaccagtttctTcttccagtttctcataaagt	4	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	78351646	78351646	T	C	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	missense	c.362	p.E121G	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	150	0	0	35	8	18.6	-	-	-	C	78351646	T	C	78351646	3	2	341	1	0	0	0	0	1	0	0	0	4617	1783	62	5	2294	5	DMGDH	5	78351646	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	7545426	78351646	102563614	276	36835										
THBS4	0	genome.wustl.edu	37	chr5	79366572	79366572	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agatgggatcctgaatgagcAggtacctgcttcgctgggag	15	8	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	79366572	79366572	A	G	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	missense	c.1559	p.Q520R	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	245	0	0	105	14	11.76	-	-	-	G	79366572	A	G	79366572	3	3	341	1	0	0	0	0	1	0	0	0	15951	202	7	5	1605	5	THBS4	5	79366572	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1014926	79366572	101548688	277	36836										
GPR98	0	genome.wustl.edu	37	chr5	90025457	90025459	+	Splice_Site	DEL	AGG	AGG	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacttctatttcattattgcAggagatcagaattcaattga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	90025457	90025459	AGG	-	DEL	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	splice_site_del	c.10427-2_10427-1	e50-1	0.997:1.000:0.997	-	-	-	no_errors	GPR98	HGNC	ENSG00000164199	161	0	0	49	8	14.04	-	-	-	-	90025459	AGG	-	90025457	8	5	341	1	0	1	0	1	0	0	1	0	6772	202	7	0	10623	0	GPR98	5	90025457	Splice_Site	DEL	AGG	TCGA-AO-A128-01A-11D-A10M-09	10658885	90025457	90889803	278	36837										
SRP19	0	genome.wustl.edu	37	chr5	112200210	112200210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtatgttcagcagttggactTaacgtatttcttgaggtatg	11	5	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	112200210	112200210	T	C	SNP	SRP19	ENST00000515463	human	ensembl	69_37n	1	putative	missense	c.98	p.L33S	0.789	NULL	NULL	-	no_errors	SRP19	HGNC	ENSG00000153037	344	0	0	228	44	16.18	-	-	-	C	112200210	T	C	112200210	3	2	341	1	0	0	0	0	1	0	0	0	15245	1741	61	5	184	5	SRP19	5	112200210	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	22174753	112200210	68715050	279	36838										
LMNB1	0	genome.wustl.edu	37	chr5	126154788	126154788	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgtaaagttagccctggacAtggaaatcagtgcttacagg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	126154788	126154788	A	-	DEL	LMNB1	ENST00000261366	human	ensembl	69_37n	1	known	frame_shift_del	c.1114	p.M372fs	1.000	pfam_F	pfam_F,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368	129	0	0	23	3	11.54	-	-	-	-	126154788	A	-	126154788	7	5	341	1	0	1	0	1	0	0	0	0	8905	217	8	0	1136	0	LMNB1	5	126154788	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	13954578	126154788	54760472	280	36839										
HSPA4	0	genome.wustl.edu	37	chr5	132424803	132424803	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttttctatcactgatgtagtAccatatccaatatctctgag	5	9	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	132424803	132424803	A	G	SNP	HSPA4	ENST00000304858	human	ensembl	69_37n	1	known	silent	c.1194	p.V398	0.990	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606	159	0	0	39	9	18.75	-	-	-	G	132424803	A	G	132424803	2	3	341	1	0	0	0	0	0	0	0	1	7465	378	14	5		5	HSPA4	5	132424803	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6270015	132424803	48490457	281	36840										
PHF15	0	genome.wustl.edu	37	chr5	133909367	133909367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctacatggtgacaaggcgCgagagaacgaaacacgccat	12	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	133909367	133909367	C	T	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	silent	c.1515	p.R505	0.962	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	157	0	0	185	24	11.48	-	-	-	T	133909367	C	T	133909367	2	4	341	1	0	0	0	0	0	0	0	1	11900	755	27	1		1	PHF15	5	133909367	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1484564	133909367	47005893	282	36841										
SMAD5	0	genome.wustl.edu	37	chr5	135489389	135489390	+	RNA	INS	-	-	CC													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tatgacgtttcacctgtgatINSctgttctttcggtagccact							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	135489389	135489390	-	CC	INS	SMAD5	ENST00000509962	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003:0.002	-	-	-	no_errors	SMAD5	HGNC	ENSG00000113658	60	0	0	14	2	12.5	-	-	-	CC	135489390	-	CC	135489389	6	5	341	0	1	1	1	0	0	0	0	0	14850	1450	50	0		0	SMAD5	5	135489389	RNA	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1580022	135489389	45425871	283	36842										
PCDHA8	0	genome.wustl.edu	37	chr5	140222343	140222343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacatcttcacggtgtctgcGcgagacgcggacgcgcagga	14	13	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140222343	140222343	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	silent	c.1437	p.A479	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	116	0	0	194	40	17.02	-	-	-	A	140222343	G	A	140222343	2	1	341	1	0	0	0	0	0	0	0	1	11603	1074	38	1		1	PCDHA8	5	140222343	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4732954	140222343	40692917	284	36843										
PCDHA10	0	genome.wustl.edu	37	chr5	140236526	140236526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attttggataaacgaaaggaCgggagaaataaaagtaaatg	11	2	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140236526	140236526	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.893	p.T298M	0.771	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	49	0	0	82	14	14.58	-	-	-	T	140236526	C	T	140236526	3	4	341	1	0	0	0	0	1	0	0	0	11593	536	19	1	895	1	PCDHA10	5	140236526	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	14183	140236526	40678734	285	36844										
PCDHA10	0	genome.wustl.edu	37	chr5	140236634	140236634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acctatggttggtcactgcaCggtcctagtggaactactgg	12	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140236634	140236634	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1001	p.T334M	0.711	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	196	0	0	236	35	12.92	-	-	-	T	140236634	C	T	140236634	3	4	341	1	0	0	0	0	1	0	0	0	11593	536	19	1	1003	1	PCDHA10	5	140236634	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	108	140236634	40678626	286	36845										
PCDHB8	0	genome.wustl.edu	37	chr5	140559583	140559583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagcctccgtgctcggccacCgccacgctgcacttgctcct	10	19	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140559583	140559583	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	silent	c.1968	p.T656	0.017	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	46	0	0	63	11	14.86	-	-	-	T	140559583	C	T	140559583	2	4	341	1	0	0	0	0	0	0	0	1	11621	639	23	1		1	PCDHB8	5	140559583	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	322949	140559583	40355677	287	36846										
PCDHB10	0	genome.wustl.edu	37	chr5	140572533	140572534	+	Frame_Shift_Del	DEL	AG	AG	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgccagtatttcaggacaaAgaaacagtcttaaaaatatc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140572533	140572534	AG	-	DEL	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	frame_shift_del	c.408_409	p.E137fs	0.004:0.046	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	55	0	0	74	26	26	-	-	-	-	140572534	AG	-	140572533	7	5	341	1	0	1	0	1	0	0	0	0	11608	69	3	0	410	0	PCDHB10	5	140572533	Frame_Shift_Del	DEL	AG	TCGA-AO-A128-01A-11D-A10M-09	12950	140572533	40342727	288	36847										
PCDHGA5	0	genome.wustl.edu	37	chr5	140745752	140745752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgagccaggactctttgcgGttgggctgcacacgggcgag	17	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140745752	140745752	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	missense	c.1855	p.V619I	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	103	0	0	92	26	22.03	-	-	-	A	140745752	G	A	140745752	3	1	341	1	0	0	0	0	1	0	0	0	11630	1261	44	4	1857	4	PCDHGA5	5	140745752	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	173219	140745752	40169508	289	36848										
PCDHGA6	0	genome.wustl.edu	37	chr5	140755876	140755876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccggctcgcactttgtgggCgtggaaggggttcgggcttt	17	10	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140755876	140755876	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	silent	c.2226	p.G742	0.859	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	290	0	0	404	64	13.68	-	-	-	T	140755876	C	T	140755876	2	4	341	1	0	0	0	0	0	0	0	1	11631	755	27	1		1	PCDHGA6	5	140755876	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	10124	140755876	40159384	290	36849										
PCDHGC4	0	genome.wustl.edu	37	chr5	140865399	140865399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctgtcgatggagggaaccCgccgagatctggcaccgcag	15	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	140865399	140865399	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	missense	c.659	p.P220L	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	53	0	0	62	17	21.52	-	-	-	T	140865399	C	T	140865399	3	4	341	1	0	0	0	0	1	0	0	0	11643	652	23	1	661	1	PCDHGC4	5	140865399	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	109523	140865399	40049861	291	36850										
ARAP3	0	genome.wustl.edu	37	chr5	141059798	141059798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agggggctgggcttgcggggCtgggctgggggatggttcca	23	7	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	141059798	141059798	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.256	p.A86T	0.014	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	80	0	0	131	49	26.92	-	-	-	T	141059798	C	T	141059798	3	4	341	1	0	0	0	0	1	0	0	0	842	797	28	4	4506	4	ARAP3	5	141059798	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	194399	141059798	39855462	292	36851										
RBM27	0	genome.wustl.edu	37	chr5	145598565	145598565	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagatgtgatgctgatccttCagccttagccaactatgttg	9	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	145598565	145598565	C	T	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.77	p.S26L	1.000	pfam_PWI	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	116	1	0.85	30	22	42.31	-	-	-	T	145598565	C	T	145598565	3	4	341	1	0	0	0	0	1	0	0	0	13210	838	29	2	83	2	RBM27	5	145598565	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4538767	145598565	35316695	293	36852										
RBM27	0	genome.wustl.edu	37	chr5	145641354	145641354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctgctccttcaacagtgcaCggaggtatccagaaggtaat	10	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	145641354	145641354	C	T	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	silent	c.2175	p.H725	0.843	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	85	0	0	43	22	33.85	-	-	-	T	145641354	C	T	145641354	2	4	341	1	0	0	0	0	0	0	0	1	13210	535	19	1		1	RBM27	5	145641354	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	42789	145641354	35273906	294	36853										
UBLCP1	0	genome.wustl.edu	37	chr5	158711931	158711931	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatatctctcaaagaagcaaGgacagtagttacaagttata	8	6	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	158711931	158711931	G	T	SNP	UBLCP1	ENST00000296786	human	ensembl	69_37n	1	known	nonsense	c.949	p.G317*	1.000	NULL	pfam_NIF,pfam_Ubiquitin,superfamily_HAD-like_dom,smart_Ubiquitin,smart_NIF,pfscan_NIF,pfscan_Ubiquitin_supergroup,tigrfam_HAD-SF_hydro_IIID	-	no_errors	UBLCP1	HGNC	ENSG00000164332	241	0	0	65	8	10.96	-	-	-	T	158711931	G	T	158711931	4	4	341	1	0	0	0	0	0	1	0	0	16988	1001	35	4	987	4	UBLCP1	5	158711931	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	13070577	158711931	22203329	295	36854										
CDHR2	0	genome.wustl.edu	37	chr5	176004543	176004543	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gactacgagaggcagacggcGatggcggtgcaggtgagggc	20	8	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	176004543	176004543	G	A	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	silent	c.1338	p.A446	0.213	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	117	0	0	163	22	11.89	-	-	-	A	176004543	G	A	176004543	2	1	341	1	0	0	0	0	0	0	0	1	3148	1045	37	1		1	CDHR2	5	176004543	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	17292612	176004543	4910717	296	36855										
HK3	0	genome.wustl.edu	37	chr5	176308441	176308441	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagccctctgggacacagccTggcacacctctagcaccatc	8	18	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	176308441	176308441	T	G	SNP	HK3	ENST00000292432	human	ensembl	69_37n	-1	known	missense	c.2489	p.Q830P	1.000	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	84	0	0	127	18	12.33	-	-	-	G	176308441	T	G	176308441	3	3	341	1	0	0	0	0	1	0	0	0	7243	1580	55	5	290	5	HK3	5	176308441	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	303898	176308441	4606819	297	36856										
SQSTM1	0	genome.wustl.edu	37	chr5	179263500	179263500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgggcttctctgatgaaggCggctggctcaccaggctcct	13	12	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	5	179263500	179263500	C	T	SNP	SQSTM1	ENST00000510187	human	ensembl	69_37n	1	putative	missense	c.980	p.A327V	0.046	NULL	pfam_Znf_ZZ,pfam_OPR_PB1,smart_OPR_PB1,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011	161	0	0	202	73	26.55	-	-	-	T	179263500	C	T	179263500	3	4	341	1	0	0	0	0	1	0	0	0	15221	755	27	1	1260	1	SQSTM1	5	179263500	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2955059	179263500	1651760	298	36857										
TXNDC5	0	genome.wustl.edu	37	chr6	7889729	7889729	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctaagaagtgcagacgtaccTttttcccatctcggaaccag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	7889729	7889729	T	-	DEL	TXNDC5	ENST00000379757	human	ensembl	69_37n	-1	known	frame_shift_del	c.818	p.K273fs	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264	75	0	0	113	20	15.04	-	-	-	-	7889729	T	-	7889729	7	5	341	1	0	1	0	1	0	0	0	0	16896	1623	56	0	500	0	TXNDC5	6	7889729	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09		7889729	163225338	299	36858										
ATXN1	0	genome.wustl.edu	37	chr6	16326645	16326645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgggctcggtgctccccgaCggcgaactgtatcacggcca	13	15	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	16326645	16326645	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.1897	p.V633I	0.990	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	199	0	0	244	47	16.15	-	-	-	T	16326645	C	T	16326645	3	4	341	1	0	0	0	0	1	0	0	0	1213	536	19	1	558	1	ATXN1	6	16326645	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	8436916	16326645	154788422	300	36859										
KDM1B	0	genome.wustl.edu	37	chr6	18197353	18197353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtctcgtgcgtattcgatgCgttcaggaagtggagagaat	15	6	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	18197353	18197353	C	T	SNP	KDM1B	ENST00000449850	human	ensembl	69_37n	1	known	missense	c.485	p.A162V	0.159	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KDM1B	HGNC	ENSG00000165097	274	0	0	82	13	13.68	-	-	-	T	18197353	C	T	18197353	3	4	341	1	0	0	0	0	1	0	0	0	8177	776	27	1	665	1	KDM1B	6	18197353	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1870708	18197353	152917714	301	36860										
KIAA0319	0	genome.wustl.edu	37	chr6	24559309	24559309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttgagagccgcatgtgcAgatttcgggccacttcagca	11	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	24559309	24559309	A	G	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.2666	p.L889P	0.999	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	94	0	0	47	10	17.54	-	-	-	G	24559309	A	G	24559309	3	3	341	1	0	0	0	0	1	0	0	0	8220	188	7	5	572	5	KIAA0319	6	24559309	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6361956	24559309	146555758	302	36861										
HIST1H2AJ	0	genome.wustl.edu	37	chr6	27782349	27782349	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggatctcggcggtcaggtacTccagcaccgccgccaggtac	13	15	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	27782349	27782349	T	C	SNP	HIST1H2AJ	ENST00000333151	human	ensembl	69_37n	-1	known	missense	c.170	p.E57G	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AJ	HGNC	ENSG00000182611	50	0	0	65	10	13.33	-	-	-	C	27782349	T	C	27782349	3	2	341	1	0	0	0	0	1	0	0	0	7187	1551	54	5	220	5	HIST1H2AJ	6	27782349	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3223040	27782349	143332718	303	36862										
SLC44A4	0	genome.wustl.edu	37	chr6	31842459	31842459	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctctcgtgcccaccctggccCttctgggcgacagtgatgag	12	15	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	31842459	31842459	C	A	SNP	SLC44A4	ENST00000465707	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SLC44A4	HGNC	ENSG00000204385	60	0	0	71	14	16.47	-	-	-	A	31842459	C	A	31842459	1	1	341	0	1	0	0	0	0	0	0	0	14727	696	24	4		4	SLC44A4	6	31842459	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4060110	31842459	139272608	304	36863										
TNXB	0	genome.wustl.edu	37	chr6	32039961	32039961	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtcgaattcaccctcagggActgtccatgagaggcccaca	10	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	32039961	32039961	A	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.4796	p.V1599D	0.055	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	68	0	0	105	15	12.5	-	-	-	T	32039961	A	T	32039961	3	4	341	1	0	0	0	0	1	0	0	0	16441	275	10	5	10045	5	TNXB	6	32039961	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	197502	32039961	139075106	305	36864										
KIFC1	0	genome.wustl.edu	37	chr6	33372652	33372652	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggctgcagacatcagaagcAgccctgtcaagcagccaagc	11	13	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	33372652	33372652	A	G	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	silent	c.780	p.A260	0.966	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	33	0	0	52	6	10.34	-	-	-	G	33372652	A	G	33372652	2	3	341	1	0	0	0	0	0	0	0	1	8364	175	7	5		5	KIFC1	6	33372652	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1332691	33372652	137742415	306	36865										
CUTA	0	genome.wustl.edu	37	chr6	33384457	33384457	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actgtgatagagtcagaaacTgactctgtgacctggcgcac	11	10	2	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	33384457	33384457	T	C	SNP	CUTA	ENST00000488478	human	ensembl	69_37n	-1	putative	missense	c.460	p.S154G	0.000	NULL	pfam_Ion_tolerance_CutA,superfamily_N-reg_PII-like_a/b	-	no_errors	CUTA	HGNC	ENSG00000112514	159	0	0	190	29	13.24	-	-	-	C	33384457	T	C	33384457	3	2	341	1	0	0	0	0	1	0	0	0	4093	1567	55	5	33	5	CUTA	6	33384457	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	11805	33384457	137730610	307	36866										
ITPR3	0	genome.wustl.edu	37	chr6	33653962	33653962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctacatcaatgaggacaacGtgggcctcgtcatccagacc	9	13	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	33653962	33653962	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.5800	p.V1934M	1.000	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	83	0	0	126	20	13.7	-	-	-	A	33653962	G	A	33653962	3	1	341	1	0	0	0	0	1	0	0	0	7976	1145	40	1	5966	1	ITPR3	6	33653962	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	269505	33653962	137461105	308	36867										
CUL9	0	genome.wustl.edu	37	chr6	43155721	43155721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccctcaaagcaaaggccgagGcccctaagacagaggccgag	12	14	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	43155721	43155721	G	A	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.1852	p.A618T	0.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	103	0	0	72	17	19.1	-	-	-	A	43155721	G	A	43155721	3	1	341	1	0	0	0	0	1	0	0	0	4092	1203	42	4	1874	4	CUL9	6	43155721	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9501759	43155721	127959346	309	36868										
GPR111	0	genome.wustl.edu	37	chr6	47641159	47641159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagctgtgtggaagacaatgActcatatacttttgctgtac	9	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	47641159	47641159	A	G	SNP	GPR111	ENST00000398742	human	ensembl	69_37n	1	known	missense	c.4	p.T2A	0.240	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR111	HGNC	ENSG00000164393	268	0	0	54	10	15.62	-	-	-	G	47641159	A	G	47641159	3	3	341	1	0	0	0	0	1	0	0	0	6678	275	10	5	6	5	GPR111	6	47641159	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4485438	47641159	123473908	310	36869										
AKD1	0	genome.wustl.edu	37	chr6	109980471	109980471	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttcctcttcttcctcttctCcttttccgtccttttgggct	4	16	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	109980471	109980471	C	A	SNP	AKD1	ENST00000524674	human	ensembl	69_37n	-1	novel	nonsense	c.253	p.E85*	0.977	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AKD1	HGNC	ENSG00000155085	306	0	0	78	11	12.22	-	-	-	A	109980471	C	A	109980471	4	1	341	1	0	0	0	0	0	1	0	0	460	855	30	2	5297	2	AKD1	6	109980471	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	62339312	109980471	61134596	311	36870										
WASF1	0	genome.wustl.edu	37	chr6	110422810	110422810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccttttcgtattgcttccagTagcacactcctggcatcact	6	14	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	110422810	110422810	T	C	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	silent	c.1503	p.L501	0.983	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	305	0	0	40	8	16.67	-	-	-	C	110422810	T	C	110422810	2	2	341	1	0	0	0	0	0	0	0	1	17349	1625	57	5		5	WASF1	6	110422810	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	442339	110422810	60692257	312	36871										
WASF1	0	genome.wustl.edu	37	chr6	110424708	110424708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcactcatctgactaaatgGcaaggcagaaagtgagtaag	10	8	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	110424708	110424708	G	A	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.766	p.P256S	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	359	0	0	35	8	18.6	-	-	-	A	110424708	G	A	110424708	3	1	341	1	0	0	0	0	1	0	0	0	17349	1203	42	4	925	4	WASF1	6	110424708	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1898	110424708	60690359	313	36872										
LAMA4	0	genome.wustl.edu	37	chr6	112430672	112430672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaggagttgatgcttacggCgccgctgaccagggctgctt	14	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	112430672	112430672	C	T	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.5440	p.A1814T	0.988	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	131	0	0	25	5	16.67	-	-	-	T	112430672	C	T	112430672	3	4	341	1	0	0	0	0	1	0	0	0	8662	768	27	1	35	1	LAMA4	6	112430672	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2005964	112430672	58684395	314	36873										
ASF1A	0	genome.wustl.edu	37	chr6	119228637	119228637	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taattgggaagataacacagAaaaactggaagatgcagaga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	119228637	119228637	A	-	DEL	ASF1A	ENST00000229595	human	ensembl	69_37n	1	known	frame_shift_del	c.473	p.K159fs	1.000	NULL	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875	173	0	0	37	8	17.78	-	-	-	-	119228637	A	-	119228637	7	5	341	1	0	1	0	1	0	0	0	0	1041	246	9	0	374	0	ASF1A	6	119228637	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	6797965	119228637	51886430	315	36874										
MAN1A1	0	genome.wustl.edu	37	chr6	119501036	119501036	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttagggaggatagggagaAgatgtgcctcgctattgaag	15	5	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	119501036	119501036	A	T	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.1910	p.L637H	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	110	0	0	31	5	13.89	-	-	-	T	119501036	A	T	119501036	3	4	341	1	0	0	0	0	1	0	0	0	9281	72	3	5	55	5	MAN1A1	6	119501036	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	272399	119501036	51614031	316	36875										
NCOA7	0	genome.wustl.edu	37	chr6	126206415	126206415	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaggagtatggtctcatctgCcccatggaagaggttgtttc	13	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	126206415	126206415	C	T	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	1	known	silent	c.810	p.C270	0.999	pfam_GRAM	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	467	0	0	53	9	14.52	-	-	-	T	126206415	C	T	126206415	2	4	341	1	0	0	0	0	0	0	0	1	10306	747	26	4		4	NCOA7	6	126206415	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6705379	126206415	44908652	317	36876										
KIAA1244	0	genome.wustl.edu	37	chr6	138601244	138601244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaggaacatgcttggagagGctggctattggggcagccca	15	9	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	138601244	138601244	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.2404	p.A802T	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	280	0	0	111	21	15.79	-	-	-	A	138601244	G	A	138601244	3	1	341	1	0	0	0	0	1	0	0	0	8269	1203	42	4	2458	4	KIAA1244	6	138601244	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	12394829	138601244	32513823	318	36877										
HIVEP2	0	genome.wustl.edu	37	chr6	143093049	143093049	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgctccatatctgcaagtcGcagacgcttctttttgggtg	11	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	143093049	143093049	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	nonsense	c.2827	p.R943*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	34	0	0	82	14	14.58	-	-	-	A	143093049	G	A	143093049	4	1	341	1	0	0	0	0	0	1	0	0	7238	1095	38	1	4537	1	HIVEP2	6	143093049	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4491805	143093049	28022018	319	36878										
TAB2	0	genome.wustl.edu	37	chr6	149699979	149699979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctcacagtcttctgcccatAgccaatataacattcagaat	5	12	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	149699979	149699979	A	G	SNP	TAB2	ENST00000286332	human	ensembl	69_37n	1	known	missense	c.928	p.S310G	0.994	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208	221	0	0	147	21	12.5	-	-	-	G	149699979	A	G	149699979	3	3	341	1	0	0	0	0	1	0	0	0	15588	420	15	5	934	5	TAB2	6	149699979	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6606930	149699979	21415088	320	36879										
AKAP12	0	genome.wustl.edu	37	chr6	151671656	151671656	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaaaagcaatgggaggagaCcaccagaaagctgatgaggc	13	9	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	151671656	151671656	C	G	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.2130	p.D710E	0.002	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	55	0	0	43	5	10.2	-	-	-	G	151671656	C	G	151671656	3	3	341	1	0	0	0	0	1	0	0	0	448	506	18	4	2169	4	AKAP12	6	151671656	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1971677	151671656	19443411	321	36880										
ARID1B	0	genome.wustl.edu	37	chr6	157522354	157522354	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccacagccgtcctaccagacGccaccgtcactgccaaatca	6	19	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	157522354	157522354	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	silent	c.4746	p.T1582	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	294	0	0	270	40	12.9	-	-	-	A	157522354	G	A	157522354	2	1	341	1	0	0	0	0	0	0	0	1	916	1074	38	1		1	ARID1B	6	157522354	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5850698	157522354	13592713	322	36881										
MLLT4	0	genome.wustl.edu	37	chr6	168348584	168348584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atatgcctctggaacaacagCgaagataacatctgtctcta	7	10	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	6	168348584	168348584	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.3584	p.A1195V	0.607	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	91	0	0	38	5	11.36	-	-	-	T	168348584	C	T	168348584	3	4	341	1	0	0	0	0	1	0	0	0	9700	768	27	1	3690	1	MLLT4	6	168348584	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	10826230	168348584	2766483	323	36882										
MAD1L1	0	genome.wustl.edu	37	chr7	2255847	2255847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcccgttccagcctagggaGccgtaccagctcagacttca	9	16	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	2255847	2255847	G	A	SNP	MAD1L1	ENST00000265854	human	ensembl	69_37n	-1	known	missense	c.754	p.L252F	0.999	pfam_MAD	pfam_MAD	-	no_errors	MAD1L1	HGNC	ENSG00000002822	139	0	0	202	30	12.93	-	-	-	A	2255847	G	A	2255847	3	1	341	1	0	0	0	0	1	0	0	0	9214	971	34	4	1450	4	MAD1L1	7	2255847	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		2255847	156882816	324	36883										
SDK1	0	genome.wustl.edu	37	chr7	4050679	4050679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcctgactccggctcgtaCctatcaattccgggtgtgcg	12	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	4050679	4050679	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.2213	p.T738I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	125	0	0	78	22	21.78	-	-	-	T	4050679	C	T	4050679	3	4	341	1	0	0	0	0	1	0	0	0	14056	507	18	4	2271	4	SDK1	7	4050679	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1794832	4050679	155087984	325	36884										
SDK1	0	genome.wustl.edu	37	chr7	4056935	4056935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtggcggcgtacaacggggcCggtctgggcgtcttcagcag	18	11	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	4056935	4056935	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.2553	p.A851	0.005	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	177	0	0	131	17	11.41	-	-	-	T	4056935	C	T	4056935	2	4	341	1	0	0	0	0	0	0	0	1	14056	639	23	1		1	SDK1	7	4056935	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6256	4056935	155081728	326	36885										
GARS	0	genome.wustl.edu	37	chr7	30671999	30671999	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttgacacagtgaacaagacCccccacactgcaactctgag	7	14	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	30671999	30671999	C	A	SNP	GARS	ENST00000389266	human	ensembl	69_37n	1	known	silent	c.2040	p.T680	0.977	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105	255	0	0	70	38	35.19	-	-	-	A	30671999	C	A	30671999	2	1	341	1	0	0	0	0	0	0	0	1	6292	610	22	4		4	GARS	7	30671999	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	26615064	30671999	128466664	327	36886										
FAM188B	0	genome.wustl.edu	37	chr7	30876278	30876278	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catggttttctttcagaggaTgtggaggatgagttgataag	14	3	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	30876278	30876278	T	C	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	silent	c.1137	p.D379	0.971	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	433	0	0	181	52	22.13	-	-	-	C	30876278	T	C	30876278	2	2	341	1	0	0	0	0	0	0	0	1	5556	1461	51	5		5	FAM188B	7	30876278	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	204279	30876278	128262385	328	36887										
POLD2	0	genome.wustl.edu	37	chr7	44156074	44156074	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcatcttaacagcctccacGctggctgcctgggttttctt	9	13	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	44156074	44156074	G	A	SNP	POLD2	ENST00000406581	human	ensembl	69_37n	-1	known	silent	c.816	p.S272	0.939	pfam_DNA_pol_alpha/epsilon_bsu	pfam_DNA_pol_alpha/epsilon_bsu	-	no_errors	POLD2	HGNC	ENSG00000106628	211	0	0	276	40	12.66	-	-	-	A	44156074	G	A	44156074	2	1	341	1	0	0	0	0	0	0	0	1	12265	1078	38	1		1	POLD2	7	44156074	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	13279796	44156074	114982589	329	36888										
PKD1L1	0	genome.wustl.edu	37	chr7	47937758	47937758	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagactgcagcttcaaacgTcactcccagcctcacaggct	8	15	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	47937758	47937758	T	C	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.2098	p.T700A	0.983	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	90	0	0	59	8	11.76	-	-	-	C	47937758	T	C	47937758	3	2	341	1	0	0	0	0	1	0	0	0	12038	1667	58	5	6627	5	PKD1L1	7	47937758	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3781684	47937758	111200905	330	36889										
IKZF1	0	genome.wustl.edu	37	chr7	50468070	50468070	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggaggagcaccgcgcctaCgacctgctgcgcgccgcctc	13	17	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	50468070	50468070	C	T	SNP	IKZF1	ENST00000331340	human	ensembl	69_37n	1	known	silent	c.1305	p.Y435	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811	36	0	0	45	18	28.12	-	-	-	T	50468070	C	T	50468070	2	4	341	1	0	0	0	0	0	0	0	1	7668	547	19	1		1	IKZF1	7	50468070	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2530312	50468070	108670593	331	36890										
LANCL2	0	genome.wustl.edu	37	chr7	55468927	55468927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggaagaaagaaaaacggagCgctgcccgctgttgtaccag	14	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	55468927	55468927	C	T	SNP	LANCL2	ENST00000254770	human	ensembl	69_37n	1	known	missense	c.739	p.R247C	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434	192	0	0	283	48	14.46	-	-	-	T	55468927	C	T	55468927	3	4	341	1	0	0	0	0	1	0	0	0	8675	768	27	1	757	1	LANCL2	7	55468927	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5000857	55468927	103669736	332	36891										
ZNF479	0	genome.wustl.edu	37	chr7	57188176	57188177	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctccagtatgaattctcttINSgtggtcagtgagggttgagg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	57188176	57188177	-	A	INS	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	frame_shift_ins	c.946_945	p.K315fs	0.010:0.055	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	66	0	0	12	2	14.29	-	-	-	A	57188177	-	A	57188176	7	5	341	1	0	1	1	0	0	0	0	0	18029	1821	63	0	632	0	ZNF479	7	57188176	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1719249	57188176	101950487	333	36892										
WBSCR17	0	genome.wustl.edu	37	chr7	70800547	70800547	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttttctaggcttatccaaaTcccttgggctcattgaaggt	8	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	70800547	70800547	T	C	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.250	p.S84P	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	16	0	0	14	9	39.13	-	-	-	C	70800547	T	C	70800547	3	2	341	1	0	0	0	0	1	0	0	0	17361	1435	50	5	256	5	WBSCR17	7	70800547	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	13612371	70800547	88338116	334	36893										
TBL2	0	genome.wustl.edu	37	chr7	72987283	72987283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacagtggtgtcactggaggCagtcatgataaacttccctg	12	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	72987283	72987283	C	T	SNP	TBL2	ENST00000305632	human	ensembl	69_37n	-1	known	missense	c.616	p.A206T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638	398	0	0	590	75	11.28	-	-	-	T	72987283	C	T	72987283	3	4	341	1	0	0	0	0	1	0	0	0	15737	710	25	4	739	4	TBL2	7	72987283	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2186736	72987283	86151380	335	36894										
CLIP2	0	genome.wustl.edu	37	chr7	73790656	73790656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaactcgggcccaggcgcccAgcagaaggagatcggcgagc	16	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	73790656	73790656	A	G	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.1925	p.Q642R	1.000	superfamily_t-SNARE	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	30	0	0	65	17	20.73	-	-	-	G	73790656	A	G	73790656	3	3	341	1	0	0	0	0	1	0	0	0	3563	188	7	5	1959	5	CLIP2	7	73790656	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	803373	73790656	85348007	336	36895										
TRIM73	0	genome.wustl.edu	37	chr7	75028494	75028494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaaggtctgcgtgcaccacCggaacccgctcagccttttc	9	17	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	75028494	75028494	C	T	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	1	known	missense	c.277	p.R93W	0.996	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	61	0	0	115	32	21.77	-	-	-	T	75028494	C	T	75028494	3	4	341	1	0	0	0	0	1	0	0	0	16642	643	23	1	279	1	TRIM73	7	75028494	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1237838	75028494	84110169	337	36896										
GRM3	0	genome.wustl.edu	37	chr7	86394476	86394476	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggattcatgaagatgttgacAagactgcaagttcttacctt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	86394476	86394476	A	-	DEL	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	frame_shift_del	c.15	p.R6fs	1.000	prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	101	0	0	17	2	10.53	-	-	-	-	86394476	A	-	86394476	7	5	341	1	0	1	0	1	0	0	0	0	6849	117	5	0	17	0	GRM3	7	86394476	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	11365982	86394476	72744187	338	36897										
SLC25A40	0	genome.wustl.edu	37	chr7	87485619	87485619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acacatacctttggggagtgGgttgttttgggcttggagtc	15	6	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	87485619	87485619	G	T	SNP	SLC25A40	ENST00000341119	human	ensembl	69_37n	-1	known	missense	c.145	p.P49T	0.964	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A40	HGNC	ENSG00000075303	228	0	0	213	29	11.89	-	-	-	T	87485619	G	T	87485619	3	4	341	1	0	0	0	0	1	0	0	0	14594	1232	43	4	907	4	SLC25A40	7	87485619	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1091143	87485619	71653044	339	36898										
TFPI2	0	genome.wustl.edu	37	chr7	93518425	93518425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccggttccggtgacacccacCggaaaagaatttttcacatg	9	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	93518425	93518425	C	T	SNP	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	missense	c.382	p.G128S	0.008	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	36	0	0	90	28	23.73	-	-	-	T	93518425	C	T	93518425	3	4	341	1	0	0	0	0	1	0	0	0	15904	652	23	1	337	1	TFPI2	7	93518425	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6032806	93518425	65620238	340	36899										
BET1	0	genome.wustl.edu	37	chr7	93633516	93633516	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agccctcttcttacccaggcCtgcacgcctcatcctgccag	7	19	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	93633516	93633516	C	A	SNP	BET1	ENST00000357520	human	ensembl	69_37n	-1	known	missense	c.13	p.G5C	1.000	NULL	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	64	0	0	82	22	20.95	-	-	-	A	93633516	C	A	93633516	3	1	341	1	0	0	0	0	1	0	0	0	1412	681	24	4	359	4	BET1	7	93633516	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	115091	93633516	65505147	341	36900										
PPP1R9A	0	genome.wustl.edu	37	chr7	94918001	94918002	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaacatcactggagaacagcINStcctgcagttggatggaaat							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	94918001	94918002	-	A	INS	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	frame_shift_ins	c.3649_3650	p.L1217fs	1.000:1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	205	0	0	51	6	10.53	-	-	-	A	94918002	-	A	94918001	7	5	341	1	0	1	1	0	0	0	0	0	12455	797	28	0	3981	0	PPP1R9A	7	94918001	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1284485	94918001	64220662	342	36901										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97939890	97939890	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagcatttagaaagggtgtcGtaatctttcctaacctgtga	10	7	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	97939890	97939890	G	A	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	silent	c.822	p.Y274	0.434	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	105	0	0	203	35	14.64	-	-	-	A	97939890	G	A	97939890	2	1	341	1	0	0	0	0	0	0	0	1	1306	1140	40	1		1	BAIAP2L1	7	97939890	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3021889	97939890	61198773	343	36902										
CYP3A5	0	genome.wustl.edu	37	chr7	99247714	99247714	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acctgtgtttctttacaaggTttgaaggagaagttctgaag	11	5	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	99247714	99247714	T	G	SNP	CYP3A5	ENST00000222982	human	ensembl	69_37n	-1	known	missense	c.1395	p.K465N	0.020	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A5	HGNC	ENSG00000106258	220	0	0	106	15	12.3	-	-	-	G	99247714	T	G	99247714	3	3	341	1	0	0	0	0	1	0	0	0	4211	1722	60	5	121	5	CYP3A5	7	99247714	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1307824	99247714	59890949	344	36903										
GPC2	0	genome.wustl.edu	37	chr7	99773404	99773404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccatagaagtctcgcagccGagagaacaggccattgaata	10	11	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	99773404	99773404	G	A	SNP	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	missense	c.439	p.R147W	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	89	0	0	181	31	14.62	-	-	-	A	99773404	G	A	99773404	3	1	341	1	0	0	0	0	1	0	0	0	6648	1057	37	1	1332	1	GPC2	7	99773404	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	525690	99773404	59365259	345	36904										
STAG3	0	genome.wustl.edu	37	chr7	99798463	99798463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagccagcggtgcttgaggcTggggcgcatgccctctacct	15	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	99798463	99798463	T	C	SNP	STAG3	ENST00000317296	human	ensembl	69_37n	1	known	silent	c.1932	p.A644	0.138	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923	61	0	0	36	7	16.28	-	-	-	C	99798463	T	C	99798463	2	2	341	1	0	0	0	0	0	0	0	1	15335	1567	55	5		5	STAG3	7	99798463	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	25059	99798463	59340200	346	36905										
SH2B2	0	genome.wustl.edu	37	chr7	101957776	101957776	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggttctggcaggggggcccCggaaccacggcctcttcgtg	16	13	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	101957776	101957776	C	G	SNP	SH2B2	ENST00000536178	human	ensembl	69_37n	1	known	missense	c.1420	p.R474G	0.998	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH2B2	HGNC	ENSG00000160999	62	0	0	117	19	13.97	-	-	-	G	101957776	C	G	101957776	3	3	341	1	0	0	0	0	1	0	0	0	14316	643	23	3	1196	3	SH2B2	7	101957776	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2159313	101957776	57180887	347	36906										
PRKRIP1	0	genome.wustl.edu	37	chr7	102006523	102006523	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagaaaatgaacacattgcaGgtgagttttcctgcttgtgt	10	7	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	102006523	102006523	G	T	SNP	PRKRIP1	ENST00000469763	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.517	-	-	-	no_errors	PRKRIP1	HGNC	ENSG00000128563	38	0	0	57	21	26.58	-	-	-	T	102006523	G	T	102006523	1	4	341	0	1	0	0	0	0	0	0	0	12606	1015	35	4		4	PRKRIP1	7	102006523	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	48747	102006523	57132140	348	36907										
CBLL1	0	genome.wustl.edu	37	chr7	107395899	107395899	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttttttgctatgactgtgctAttttacatgaaaaaaaggga	8	4	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	107395899	107395899	A	G	SNP	CBLL1	ENST00000440859	human	ensembl	69_37n	1	known	missense	c.403	p.I135V	1.000	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879	153	0	0	64	12	15.79	-	-	-	G	107395899	A	G	107395899	3	3	341	1	0	0	0	0	1	0	0	0	2728	449	16	5	421	5	CBLL1	7	107395899	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5389376	107395899	51742764	349	36908										
IMPDH1	0	genome.wustl.edu	37	chr7	128033079	128033079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctcagtacagccgcttttcGtaactgtggggacaaggcaa	11	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	128033079	128033079	G	A	SNP	IMPDH1	ENST00000338791	human	ensembl	69_37n	-1	known	silent	c.1782	p.Y594	1.000	NULL	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_Cysta_beta_synth_core,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348	155	1	0.64	190	27	12.44	-	-	-	A	128033079	G	A	128033079	2	1	341	1	0	0	0	0	0	0	0	1	7780	1140	40	1		1	IMPDH1	7	128033079	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	20637180	128033079	31105584	350	36909										
CPA1	0	genome.wustl.edu	37	chr7	130023254	130023254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcacggggggcagtaagcGtccagccatctggatcgaca	14	12	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	130023254	130023254	G	A	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.506	p.R169H	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	147	0	0	138	32	18.82	-	-	-	A	130023254	G	A	130023254	3	1	341	1	0	0	0	0	1	0	0	0	3819	1145	40	1	524	1	CPA1	7	130023254	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1990175	130023254	29115409	351	36910										
AKR1B10	0	genome.wustl.edu	37	chr7	134212576	134212577	+	RNA	INS	-	-	G													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactgcactctagccttggcINSaacagtgcaagactgtctca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	134212576	134212577	-	G	INS	AKR1B10	ENST00000475559	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004:0.003	-	-	-	no_errors	AKR1B10	HGNC	ENSG00000198074	98	0	0	23	3	11.54	-	-	-	G	134212577	-	G	134212576	6	5	341	0	1	1	1	0	0	0	0	0	467	725	25	0		0	AKR1B10	7	134212576	RNA	INS	-	TCGA-AO-A128-01A-11D-A10M-09	4189322	134212576	24926087	352	36911	301	2								
AKR1B10	0	genome.wustl.edu	37	chr7	134212577	134212578	+	RNA	INS	-	-	CAG													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actgcactctagccttggcaINSacagtgcaagactgtctcaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	134212577	134212578	-	CAG	INS	AKR1B10	ENST00000475559	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	AKR1B10	HGNC	ENSG00000198074	101	0	0	23	3	11.54	-	-	-	CAG	134212578	-	CAG	134212577	6	5	341	0	1	1	1	0	0	0	0	0	467	145	5	0		0	AKR1B10	7	134212577	RNA	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1	134212577	24926086	353	36912	301	2								
NUP205	0	genome.wustl.edu	37	chr7	135261085	135261085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctgttcttctgtactgggaTggaaagcgatgcattgcgaa	13	7	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	135261085	135261085	T	C	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	silent	c.411	p.D137	1.000	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	282	0	0	65	9	12.16	-	-	-	C	135261085	T	C	135261085	2	2	341	1	0	0	0	0	0	0	0	1	10832	1461	51	5		5	NUP205	7	135261085	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1048508	135261085	23877578	354	36913										
TRIM24	0	genome.wustl.edu	37	chr7	138252293	138252293	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caatggaccagttcttcctcCtcatcctcaacaactgagat	5	14	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	138252293	138252293	C	A	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	missense	c.1598	p.P533H	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	138	1	0.72	45	5	10	-	-	-	A	138252293	C	A	138252293	3	1	341	1	0	0	0	0	1	0	0	0	16594	681	24	4	1636	4	TRIM24	7	138252293	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2991208	138252293	20886370	355	36914										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138437532	138437532	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agccaggagtgccagttggcAgcggcttcctgcagcaggcg	16	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	138437532	138437532	A	G	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	silent	c.867	p.A289	0.387	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	150	0	0	98	11	10.09	-	-	-	G	138437532	A	G	138437532	2	3	341	1	0	0	0	0	0	0	0	1	1174	175	7	5		5	ATP6V0A4	7	138437532	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	185239	138437532	20701131	356	36915										
HIPK2	0	genome.wustl.edu	37	chr7	139281515	139281515	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtccgtgtcactgctgatggTgatgacgctgaccgtggggc	16	10	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	139281515	139281515	T	C	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.2665	p.T889A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	440	2	0.45	474	78	14	-	-	-	C	139281515	T	C	139281515	3	2	341	1	0	0	0	0	1	0	0	0	7168	1696	59	5	947	5	HIPK2	7	139281515	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	843983	139281515	19857148	357	36916										
TBXAS1	0	genome.wustl.edu	37	chr7	139652455	139652455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgaagccgagtggtatctatGtgaatctccattatgccact	9	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	139652455	139652455	G	A	SNP	TBXAS1	ENST00000416849	human	ensembl	69_37n	1	known	missense	c.559	p.V187M	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377	127	1	0.78	134	26	16.25	-	-	-	A	139652455	G	A	139652455	3	1	341	1	0	0	0	0	1	0	0	0	15759	1377	48	4	581	4	TBXAS1	7	139652455	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	370940	139652455	19486208	358	36917										
DENND2A	0	genome.wustl.edu	37	chr7	140244491	140244491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacacagaccaggtggcggaCgctgagggaggagaagagag	18	8	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	140244491	140244491	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	missense	c.2254	p.V752I	0.998	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	117	0	0	111	15	11.81	-	-	-	T	140244491	C	T	140244491	3	4	341	1	0	0	0	0	1	0	0	0	4465	536	19	1	803	1	DENND2A	7	140244491	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	592036	140244491	18894172	359	36918										
OR2F2	0	genome.wustl.edu	37	chr7	143632733	143632733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgcgatactcggccatcatGcatggagggctgtgtgctag	14	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	143632733	143632733	G	A	SNP	OR2F2	ENST00000408955	human	ensembl	69_37n	1	known	missense	c.408	p.M136I	0.740	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910	446	0	0	237	48	16.84	-	-	-	A	143632733	G	A	143632733	3	1	341	1	0	0	0	0	1	0	0	0	11070	1319	46	4	410	4	OR2F2	7	143632733	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3388242	143632733	15505930	360	36919										
SSPO	0	genome.wustl.edu	37	chr7	149481144	149481144	+	RNA	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accctgagggccagtgtgtgCcccccagcttgtgcccctgc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	149481144	149481144	C	-	DEL	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	72	0	0	135	41	23.16	-	-	-	-	149481144	C	-	149481144	6	5	341	0	1	1	0	1	0	0	0	0	15280	739	26	0		0	SSPO	7	149481144	RNA	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	5848411	149481144	9657519	361	36920										
SSPO	0	genome.wustl.edu	37	chr7	149500159	149500159	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatggcggtgccccctgcccCggggcctcccaagagagggc	15	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	149500159	149500159	C	T	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	8	0	0	22	7	24.14	-	-	-	T	149500159	C	T	149500159	1	4	341	0	1	0	0	0	0	0	0	0	15280	639	23	1		1	SSPO	7	149500159	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	19015	149500159	9638504	362	36921										
REPIN1	0	genome.wustl.edu	37	chr7	150068459	150068459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggctgaggcaacaaggcacGtcagtggcccagtctggtgc	16	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	150068459	150068459	G	A	SNP	REPIN1	ENST00000518514	human	ensembl	69_37n	1	putative	missense	c.274	p.V92I	0.000	NULL	NULL	-	no_errors	REPIN1	HGNC	ENSG00000214022	25	0	0	31	5	13.89	-	-	-	A	150068459	G	A	150068459	3	1	341	1	0	0	0	0	1	0	0	0	13310	1132	40	1	306	1	REPIN1	7	150068459	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	568300	150068459	9070204	363	36922										
GIMAP1	0	genome.wustl.edu	37	chr7	150417324	150417324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaggtgggacaagtgccacGtggaagtcgtggacactccg	16	10	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	150417324	150417324	G	A	SNP	GIMAP1	ENST00000307194	human	ensembl	69_37n	1	known	missense	c.232	p.V78M	0.017	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP1	HGNC	ENSG00000213203	49	0	0	75	13	14.77	-	-	-	A	150417324	G	A	150417324	3	1	341	1	0	0	0	0	1	0	0	0	6431	1145	40	1	238	1	GIMAP1	7	150417324	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	348865	150417324	8721339	364	36923										
ABCB8	0	genome.wustl.edu	37	chr7	150731368	150731368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccccattccagctggccttGggtgcggcactcgtgaatgt	12	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	150731368	150731368	G	T	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	missense	c.468	p.L156F	0.979	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	119	1	0.83	154	34	18.09	-	-	-	T	150731368	G	T	150731368	3	4	341	1	0	0	0	0	1	0	0	0	47	1339	47	4	427	4	ABCB8	7	150731368	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	314044	150731368	8407295	365	36924										
GALNTL5	0	genome.wustl.edu	37	chr7	151704925	151704925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttctaggtcacctgcaatgTctggaggaatttttgctata	9	7	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	151704925	151704925	T	G	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	missense	c.922	p.S308A	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	160	1	0.62	55	28	33.73	-	-	-	G	151704925	T	G	151704925	3	3	341	1	0	0	0	0	1	0	0	0	6274	1667	58	5	944	5	GALNTL5	7	151704925	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	973557	151704925	7433738	366	36925										
MLL3	0	genome.wustl.edu	37	chr7	151879585	151879586	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagatgctgagaaccaaattINSgctgttgttgctgctgctgc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	151879585	151879586	-	A	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5360_5359	p.Q1787fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	67	0	0	10	3	23.08	-	-	-	A	151879586	-	A	151879585	7	5	341	1	0	1	1	0	0	0	0	0	9693	1812	63	0	9471	0	MLL3	7	151879585	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	174660	151879585	7259078	367	36926										
MLL3	0	genome.wustl.edu	37	chr7	151949160	151949161	+	Frame_Shift_Ins	INS	-	-	GG													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatctgttggtttgtcacacINStctaggtgaacccacctgca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	151949160	151949161	-	GG	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1485_1484	p.E495fs	1.000:1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	172	0	0	32	4	11.11	-	-	-	GG	151949161	-	GG	151949160	7	5	341	1	0	1	1	0	0	0	0	0	9693	564	20	0	13446	0	MLL3	7	151949160	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	69575	151949160	7189503	368	36927										
DNAJB6	0	genome.wustl.edu	37	chr7	157178240	157178240	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atttttttcctacagaattgTcgagaacggtcaagaaagag	9	6	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	7	157178240	157178240	T	C	SNP	DNAJB6	ENST00000262177	human	ensembl	69_37n	1	known	missense	c.626	p.V209A	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB6	HGNC	ENSG00000105993	64	0	0	33	5	13.16	-	-	-	C	157178240	T	C	157178240	3	2	341	1	0	0	0	0	1	0	0	0	4659	1667	58	5	652	5	DNAJB6	7	157178240	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5229080	157178240	1960423	369	36928										
SGK223	0	genome.wustl.edu	37	chr8	8233987	8233987	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgtgactcagcaattcctgCtccacctcctcttcttcctc	4	18	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	8233987	8233987	C	T	SNP	SGK223	ENST00000330777	human	ensembl	69_37n	-1	known	silent	c.1932	p.E644	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRAGMIN	Clone_based_vega_gene	ENSG00000182319	168	0	0	209	92	30.46	-	-	-	T	8233987	C	T	8233987	2	4	341	1	0	0	0	0	0	0	0	1	14298	796	28	4		4	SGK223	8	8233987	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		8233987	138130035	370	36929										
C8orf74	0	genome.wustl.edu	37	chr8	10557966	10557966	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgagcaaaggaaagaaagcGaaggcaaggaagtagaaggt	16	4	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	10557966	10557966	G	A	SNP	C8orf74	ENST00000304519	human	ensembl	69_37n	1	known	silent	c.870	p.A290	0.002	NULL	NULL	-	no_errors	C8orf74	HGNC	ENSG00000171060	98	0	0	109	37	25.34	-	-	-	A	10557966	G	A	10557966	2	1	341	1	0	0	0	0	0	0	0	1	2461	1045	37	1		1	C8orf74	8	10557966	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2323979	10557966	135806056	371	36930										
STMN4	0	genome.wustl.edu	37	chr8	27097623	27097624	+	Frame_Shift_Del	DEL	CT	CT	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcaatggccttttggatcacCtctctctcatgttcccgttt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	27097623	27097624	CT	-	DEL	STMN4	ENST00000350889	human	ensembl	69_37n	-1	known	frame_shift_del	c.456_455	p.E152fs	1.000:1.000	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN4	HGNC	ENSG00000015592	425	0	0	437	49	10.06	-	-	-	-	27097624	CT	-	27097623	7	5	341	1	0	1	0	1	0	0	0	0	15402	680	24	0	202	0	STMN4	8	27097623	Frame_Shift_Del	DEL	CT	TCGA-AO-A128-01A-11D-A10M-09	16539657	27097623	119266399	372	36931										
WRN	0	genome.wustl.edu	37	chr8	30999101	30999101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacaaatttatgaagatttgCgcccttacgaaaaaggtaaa	7	6	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	30999101	30999101	C	T	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	silent	c.3123	p.C1041	0.917	pfam_RQC_domain,smart_RQC_domain	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	104	0	0	65	11	14.47	-	-	-	T	30999101	C	T	30999101	2	4	341	1	0	0	0	0	0	0	0	1	17499	776	27	1		1	WRN	8	30999101	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3901478	30999101	115364921	373	36932										
KCNU1	0	genome.wustl.edu	37	chr8	36703125	36703125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atactaaatccacctccacaAgtgaggatacgtaagaacac	6	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	36703125	36703125	A	C	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.1731	p.Q577H	0.922	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	201	0	0	24	7	22.58	-	-	-	C	36703125	A	C	36703125	3	2	341	1	0	0	0	0	1	0	0	0	8147	69	3	5	1797	5	KCNU1	8	36703125	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5704024	36703125	109660897	374	36933										
ANK1	0	genome.wustl.edu	37	chr8	41615585	41615585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttaatatctaccccattcCgcaggtgatccaaagctttg	7	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	41615585	41615585	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.98	p.R33Q	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	227	0	0	188	43	18.61	-	-	-	T	41615585	C	T	41615585	3	4	341	1	0	0	0	0	1	0	0	0	620	652	23	1	6065	1	ANK1	8	41615585	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4912460	41615585	104748437	375	36934										
PLAT	0	genome.wustl.edu	37	chr8	42038077	42038077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtatgcccccgcacaggaacCgctctccgggcgacctcctg	11	18	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	42038077	42038077	C	T	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.1016	p.R339Q	0.075	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	52	0	0	111	17	13.28	-	-	-	T	42038077	C	T	42038077	3	4	341	1	0	0	0	0	1	0	0	0	12095	652	23	1	692	1	PLAT	8	42038077	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	422492	42038077	104325945	376	36935										
NPBWR1	0	genome.wustl.edu	37	chr8	53852750	53852750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggtgctgcccatcaacatcGccgacttcctgctgcggcag	11	15	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	53852750	53852750	G	A	SNP	NPBWR1	ENST00000331251	human	ensembl	69_37n	1	known	missense	c.283	p.A95T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Neuropept_W_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Neuropept_W_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729	138	0	0	235	50	17.54	-	-	-	A	53852750	G	A	53852750	3	1	341	1	0	0	0	0	1	0	0	0	10640	1087	38	1	285	1	NPBWR1	8	53852750	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	11814673	53852750	92511272	377	36936										
RP1	0	genome.wustl.edu	37	chr8	55539012	55539012	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcaaagaagagtttagtttCaaaagttactgattcacaca	8	6	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	55539012	55539012	C	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	nonsense	c.2570	p.S857*	1.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	20	0	0	31	7	18.42	-	-	-	A	55539012	C	A	55539012	4	1	341	1	0	0	0	0	0	1	0	0	13618	838	29	2	2580	2	RP1	8	55539012	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1686262	55539012	90825010	378	36937										
TGS1	0	genome.wustl.edu	37	chr8	56695306	56695306	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actgcttaatctgcttcgcaGggatcgaaaattgtacaatt	8	8	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	56695306	56695306	G	T	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	splice_site	c.102-1	e2-1	1.000	-	-	-	no_errors	TGS1	HGNC	ENSG00000137574	90	0	0	77	12	13.48	-	-	-	T	56695306	G	T	56695306	5	4	341	1	0	0	0	0	0	0	1	0	15932	1014	35	4	107	4	TGS1	8	56695306	Splice_Site	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1156294	56695306	89668716	379	36938										
UBXN2B	0	genome.wustl.edu	37	chr8	59343210	59343210	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatgaagccacaagagcttcAggtgatgataaatctaaggt	10	6	2	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	59343210	59343210	A	G	SNP	UBXN2B	ENST00000521796	human	ensembl	69_37n	1	putative	missense	c.157	p.R53G	0.989	NULL	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBXN2B	HGNC	ENSG00000215114	65	0	0	88	10	10.2	-	-	-	G	59343210	A	G	59343210	3	3	341	1	0	0	0	0	1	0	0	0	17012	175	7	5	331	5	UBXN2B	8	59343210	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2647904	59343210	87020812	380	36939										
CYP7A1	0	genome.wustl.edu	37	chr8	59409253	59409253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtgtgtcttggccttctccAgatcatcaaaggtggacaaa	11	9	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	59409253	59409253	A	G	SNP	CYP7A1	ENST00000301645	human	ensembl	69_37n	-1	known	missense	c.818	p.L273P	0.142	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910	174	0	0	149	32	17.68	-	-	-	G	59409253	A	G	59409253	3	3	341	1	0	0	0	0	1	0	0	0	4227	188	7	5	712	5	CYP7A1	8	59409253	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	66043	59409253	86954769	381	36940										
CSPP1	0	genome.wustl.edu	37	chr8	67988731	67988731	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttcagggaaagttgtcagcGaagctttctgaaaacagtaa	10	6	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	67988731	67988731	G	A	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.222	p.A74	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	77	0	0	45	15	25	-	-	-	A	67988731	G	A	67988731	2	1	341	1	0	0	0	0	0	0	0	1	3994	1045	37	1		1	CSPP1	8	67988731	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	8579478	67988731	78375291	382	36941										
KCNB2	0	genome.wustl.edu	37	chr8	73849474	73849474	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgccgccctccgcctctcaCttgcagatgaagttcccaac	7	19	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	73849474	73849474	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	silent	c.1884	p.H628	0.942	pfam_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv2.2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	37	0	0	18	8	30.77	-	-	-	T	73849474	C	T	73849474	2	4	341	1	0	0	0	0	0	0	0	1	8067	564	20	4		4	KCNB2	8	73849474	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5860743	73849474	72514548	383	36942										
STAU2	0	genome.wustl.edu	37	chr8	74529674	74529674	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acataaaagatcttaggcacTgggcaatgatacctaaaata	7	7	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	74529674	74529674	T	C	SNP	STAU2	ENST00000524300	human	ensembl	69_37n	-1	known	silent	c.423	p.P141	0.876	smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU2	HGNC	ENSG00000040341	131	0	0	104	16	13.33	-	-	-	C	74529674	T	C	74529674	2	2	341	1	0	0	0	0	0	0	0	1	15364	1567	55	5		5	STAU2	8	74529674	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	680200	74529674	71834348	384	36943										
HEY1	0	genome.wustl.edu	37	chr8	80677450	80677450	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctccgatctccgtcccccaAggtctatagggcttgccaag	10	15	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	80677450	80677450	A	T	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	silent	c.900	p.P300	0.995	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	130	0	0	243	69	22.12	-	-	-	T	80677450	A	T	80677450	2	4	341	1	0	0	0	0	0	0	0	1	7129	59	3	5		5	HEY1	8	80677450	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6147776	80677450	65686572	385	36944										
CNGB3	0	genome.wustl.edu	37	chr8	87588288	87588288	+	Missense_Mutation	SNP	T	T	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttcattttctttttgtttaTcttcattttctttttgttta							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	87588288	87588288	T	A	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.2174	p.D725V	0.018	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	133	0	0	99	12	10.81	-	-	-	A	87588288	T	A	87588288	3	1	341	1	0	0	0	0	1	0	0	0	3631	1435	50	5	259	5	CNGB3	8	87588288	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6910838	87588288	58775734	386	36945	302	2								
CNGB3	0	genome.wustl.edu	37	chr8	87588289	87588289	+	Missense_Mutation	SNP	C	C	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcattttctttttgtttatCttcattttctttttgtttat							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	87588289	87588289	C	T	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.2173	p.D725N	0.021	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	128	0	0	97	13	11.71	-	-	-	T	87588289	C	T	87588289	3	4	341	1	0	0	0	0	1	0	0	0	3631	913	32	2	260	2	CNGB3	8	87588289	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1	87588289	58775733	387	36946	302	2								
RIPK2	0	genome.wustl.edu	37	chr8	90782026	90782026	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gattttggtttatcaaagtgGcgcatgatgtccctctcaca	9	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	90782026	90782026	G	T	SNP	RIPK2	ENST00000220751	human	ensembl	69_37n	1	known	missense	c.510	p.W170C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_CARD,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312	125	0	0	54	6	10	-	-	-	T	90782026	G	T	90782026	3	4	341	1	0	0	0	0	1	0	0	0	13467	1212	42	4	524	4	RIPK2	8	90782026	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3193737	90782026	55581996	388	36947										
DECR1	0	genome.wustl.edu	37	chr8	91029453	91029453	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgctaccacctaatagtttTcaaggaaaagtggcattcat	7	8	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	91029453	91029453	T	G	SNP	DECR1	ENST00000220764	human	ensembl	69_37n	1	known	missense	c.171	p.F57L	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325	147	0	0	18	3	14.29	-	-	-	G	91029453	T	G	91029453	3	3	341	1	0	0	0	0	1	0	0	0	4413	1780	62	5	177	5	DECR1	8	91029453	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	247427	91029453	55334569	389	36948										
CCNE2	0	genome.wustl.edu	37	chr8	95893941	95893941	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actggtgacaactgtcccccTtttctgaaggtgtttatgta	9	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	95893941	95893941	T	C	SNP	CCNE2	ENST00000308108	human	ensembl	69_37n	-1	known	silent	c.1134	p.K378	0.996	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305	419	0	0	304	38	11.08	-	-	-	C	95893941	T	C	95893941	2	2	341	1	0	0	0	0	0	0	0	1	2950	1606	56	5		5	CCNE2	8	95893941	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	4864488	95893941	50470081	390	36949										
TSPYL5	0	genome.wustl.edu	37	chr8	98289557	98289557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accgaggtattctcccctgcCgcccctttcttctgcctccc	6	20	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	98289557	98289557	C	T	SNP	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	silent	c.516	p.A172	0.001	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	104	0	0	212	61	22.26	-	-	-	T	98289557	C	T	98289557	2	4	341	1	0	0	0	0	0	0	0	1	16758	639	23	1		1	TSPYL5	8	98289557	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2395616	98289557	48074465	391	36950										
RNF19A	0	genome.wustl.edu	37	chr8	101276385	101276385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaaagagaaattggaactaCgccatagacataagctaaca	7	8	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	101276385	101276385	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	missense	c.1345	p.V449I	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	204	0	0	63	13	17.11	-	-	-	T	101276385	C	T	101276385	3	4	341	1	0	0	0	0	1	0	0	0	13556	536	19	1	1187	1	RNF19A	8	101276385	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2986828	101276385	45087637	392	36951										
ANGPT1	0	genome.wustl.edu	37	chr8	108334135	108334135	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cattcttaccaccttctttaGtgcaaagattgacaaggttg	7	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	108334135	108334135	G	C	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.797	p.T266S	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	286	0	0	64	10	13.51	-	-	-	C	108334135	G	C	108334135	3	2	341	1	0	0	0	0	1	0	0	0	610	1029	36	4	723	4	ANGPT1	8	108334135	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7057750	108334135	38029887	393	36952										
CSMD3	0	genome.wustl.edu	37	chr8	113256714	113256714	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaagaagccaggctgacaGgtataaatcagtgtataccc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	113256714	113256714	G	-	DEL	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	frame_shift_del	c.10311	p.C3438fs	0.990	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	207	0	0	14	2	12.5	-	-	-	-	113256714	G	-	113256714	7	5	341	1	0	1	0	1	0	0	0	0	3978	987	35	0	840	0	CSMD3	8	113256714	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	4922579	113256714	33107308	394	36953										
CSMD3	0	genome.wustl.edu	37	chr8	113649054	113649054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgaccacgtacccacacacCttggcagaggtgcactccac	8	17	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	113649054	113649054	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.3707	p.R1236M	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	344	0	0	59	10	14.49	-	-	-	A	113649054	C	A	113649054	3	1	341	1	0	0	0	0	1	0	0	0	3978	681	24	4	7616	4	CSMD3	8	113649054	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	392340	113649054	32714968	395	36954										
COL14A1	0	genome.wustl.edu	37	chr8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttagaaattgatgaggtgaCgacagacagttttagggtga	13	4	0	6			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	121238908	121238908	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.1907	p.T636M	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	273	0	0	42	6	12.5	-	-	-	T	121238908	C	T	121238908	3	4	341	1	0	0	0	0	1	0	0	0	3701	536	19	1	1965	1	COL14A1	8	121238908	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7589854	121238908	25125114	396	36955										
SNTB1	0	genome.wustl.edu	37	chr8	121561136	121561136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttgcctggtaccagttcgcGttgcaaaggacagatccaca	10	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	121561136	121561136	G	A	SNP	SNTB1	ENST00000395601	human	ensembl	69_37n	-1	known	missense	c.1199	p.T400M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164	354	0	0	73	30	29.13	-	-	-	A	121561136	G	A	121561136	3	1	341	1	0	0	0	0	1	0	0	0	14961	1145	40	1	429	1	SNTB1	8	121561136	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	322228	121561136	24802886	397	36956										
FER1L6	0	genome.wustl.edu	37	chr8	124968316	124968316	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccaacaaggctgcgaaaggTgaggctgggggtggggtgct	20	7	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	124968316	124968316	T	C	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	splice_site	c.76+2	e1+2	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814	118	1	0.83	67	10	12.99	-	-	-	C	124968316	T	C	124968316	5	2	341	1	0	0	0	0	0	0	1	0	5861	1710	59	5	80	5	FER1L6	8	124968316	Splice_Site	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3407180	124968316	21395706	398	36957										
FAM84B	0	genome.wustl.edu	37	chr8	127568643	127568643	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggaggaagagagggagaaagGgagcagcggctgctactgca	19	6	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	127568643	127568643	G	T	SNP	FAM84B	ENST00000517458	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM84B	HGNC	ENSG00000168672	12	0	0	30	9	23.08	-	-	-	T	127568643	G	T	127568643	1	4	341	0	1	0	0	0	0	0	0	0	5687	1247	43	4		4	FAM84B	8	127568643	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2600327	127568643	18795379	399	36958										
TG	0	genome.wustl.edu	37	chr8	133918967	133918967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgccattcaacgcgtcggaGgtggttggtggaacaatcct	13	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	133918967	133918967	G	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.3669	p.E1223D	0.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	77	0	0	131	25	16.03	-	-	-	T	133918967	G	T	133918967	3	4	341	1	0	0	0	0	1	0	0	0	15908	991	35	4	3735	4	TG	8	133918967	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6350324	133918967	12445055	400	36959										
TRAPPC9	0	genome.wustl.edu	37	chr8	141231656	141231656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgccgaaaaggactggacaGgggaaagccactcacactga	12	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	141231656	141231656	G	T	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.2752	p.L918M	0.963	pfam_TRAPP_II_complex_Trs120	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	186	0	0	134	30	18.29	-	-	-	T	141231656	G	T	141231656	3	4	341	1	0	0	0	0	1	0	0	0	16561	991	35	4	1016	4	TRAPPC9	8	141231656	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7312689	141231656	5132366	401	36960										
CYHR1	0	genome.wustl.edu	37	chr8	145677911	145677911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtcagctcatggaaggggccGtgccatgggcagccgatgcg	17	11	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	8	145677911	145677911	G	A	SNP	CYHR1	ENST00000438911	human	ensembl	69_37n	-1	known	silent	c.528	p.H176	0.948	superfamily_TRAF-like	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	CYHR1	HGNC	ENSG00000187954	259	0	0	415	56	11.84	-	-	-	A	145677911	G	A	145677911	2	1	341	1	0	0	0	0	0	0	0	1	4171	1136	40	1		1	CYHR1	8	145677911	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4446255	145677911	686111	402	36961										
MPDZ	0	genome.wustl.edu	37	chr9	13219576	13219577	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccgcaactctggtgttgaaINSgttggggatgaggagagggt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	13219576	13219577	-	T	INS	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1068_1067	p.S357fs	0.001:0.024	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	459	0	0	51	6	10.53	-	-	-	T	13219577	-	T	13219576	7	5	341	1	0	1	1	0	0	0	0	0	9794	59	3	0	5213	0	MPDZ	9	13219576	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09		13219576	127993855	403	36962	303	2								
MPDZ	0	genome.wustl.edu	37	chr9	13219578	13219579	+	Frame_Shift_Ins	INS	-	-	G													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgcaactctggtgttgaagtINStggggatgaggagagggtga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	13219578	13219579	-	G	INS	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1066_1065	p.T355fs	0.000:0.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	463	0	0	50	6	10.71	-	-	-	G	13219579	-	G	13219578	7	5	341	1	0	1	1	0	0	0	0	0	9794	1725	60	0	5215	0	MPDZ	9	13219578	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	2	13219578	127993853	404	36963	303	2								
PSIP1	0	genome.wustl.edu	37	chr9	15490114	15490114	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaaatatatcctttggtcctAaaaaagcactaaaaaagaag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	15490114	15490114	A	-	DEL	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	frame_shift_del	c.158	p.L53fs	1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	74	0	0	31	13	28.89	-	-	-	-	15490114	A	-	15490114	7	5	341	1	0	1	0	1	0	0	0	0	12743	372	13	0	1515	0	PSIP1	9	15490114	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	2270536	15490114	125723317	405	36964										
TAF1L	0	genome.wustl.edu	37	chr9	32633083	32633083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttactcttccagaaaaggCggtaaataaaaacctgtaga	7	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	32633083	32633083	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2495	p.R832H	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	92	0	0	65	19	22.35	-	-	-	T	32633083	C	T	32633083	3	4	341	1	0	0	0	0	1	0	0	0	15615	768	27	1	2989	1	TAF1L	9	32633083	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	17142969	32633083	108580348	406	36965										
FANCG	0	genome.wustl.edu	37	chr9	35078687	35078687	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcaggataatgaagttgcaGgtgacagtcagctccaaggg	13	8	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35078687	35078687	G	T	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	silent	c.222	p.T74	0.133	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	124	0	0	145	27	15.7	-	-	-	T	35078687	G	T	35078687	2	4	341	1	0	0	0	0	0	0	0	1	5714	987	35	4		4	FANCG	9	35078687	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2445604	35078687	106134744	407	36966										
UNC13B	0	genome.wustl.edu	37	chr9	35295831	35295831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttccctgtgccggtgcgatCgccacagcagctgctacttc	11	15	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35295831	35295831	C	T	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.701	p.S234L	0.938	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	226	0	0	141	28	16.37	-	-	-	T	35295831	C	T	35295831	3	4	341	1	0	0	0	0	1	0	0	0	17082	893	31	1	695	1	UNC13B	9	35295831	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	217144	35295831	105917600	408	36967										
FAM166B	0	genome.wustl.edu	37	chr9	35563030	35563030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actcagagcctcggcccagaCctggctgcagttcttggcaa	11	14	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35563030	35563030	C	T	SNP	FAM166B	ENST00000447837	human	ensembl	69_37n	-1	known	missense	c.334	p.V112I	0.992	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187	145	0	0	172	35	16.59	-	-	-	T	35563030	C	T	35563030	3	4	341	1	0	0	0	0	1	0	0	0	5522	507	18	4	328	4	FAM166B	9	35563030	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	267199	35563030	105650401	409	36968										
CA9	0	genome.wustl.edu	37	chr9	35679330	35679330	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaccagacagtgatgctgagTgctaagcaggtgggcctggg	16	8	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35679330	35679330	T	C	SNP	CA9	ENST00000378357	human	ensembl	69_37n	1	known	silent	c.1056	p.S352	0.998	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	566	0	0	560	81	12.58	-	-	-	C	35679330	T	C	35679330	2	2	341	1	0	0	0	0	0	0	0	1	2549	1693	59	5		5	CA9	9	35679330	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	116300	35679330	105534101	410	36969										
TLN1	0	genome.wustl.edu	37	chr9	35707171	35707171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggggattgactgcgagggccCgggctgtctggatgagtccc	18	10	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35707171	35707171	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.4853	p.R1618Q	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	37	0	0	42	29	40.28	-	-	-	T	35707171	C	T	35707171	3	4	341	1	0	0	0	0	1	0	0	0	16042	652	23	1	2856	1	TLN1	9	35707171	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	27841	35707171	105506260	411	36970										
GBA2	0	genome.wustl.edu	37	chr9	35738880	35738880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggattaaatatgcattgaCgcggagccatggttcatcat	10	7	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	35738880	35738880	C	T	SNP	GBA2	ENST00000545786	human	ensembl	69_37n	-1	known	missense	c.1834	p.V612I	0.849	pfam_Glucosylceramidase,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	383	0	0	315	36	10.26	-	-	-	T	35738880	C	T	35738880	3	4	341	1	0	0	0	0	1	0	0	0	6317	536	19	1	991	1	GBA2	9	35738880	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	31709	35738880	105474551	412	36971										
APBA1	0	genome.wustl.edu	37	chr9	72131695	72131695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcaggtggttgggcagcgcGcggcggtgcgtggcctcggc	21	11	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	72131695	72131695	G	A	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	silent	c.432	p.R144	0.047	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	113	0	0	159	18	10.17	-	-	-	A	72131695	G	A	72131695	2	1	341	1	0	0	0	0	0	0	0	1	757	1074	38	1		1	APBA1	9	72131695	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	36392815	72131695	69081736	413	36972										
TRPM3	0	genome.wustl.edu	37	chr9	73152124	73152124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggacaatgtaggcggcgtccGtgcagtctgacgaggtcctc	15	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	73152124	73152124	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.3950	p.T1317M	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	139	0	0	117	16	12.03	-	-	-	A	73152124	G	A	73152124	3	1	341	1	0	0	0	0	1	0	0	0	16683	1145	40	1	1258	1	TRPM3	9	73152124	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1020429	73152124	68061307	414	36973										
CTSL1	0	genome.wustl.edu	37	chr9	90344590	90344590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgatgaaggcagttgcaactGtggggcccatttctgttgct	13	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	90344590	90344590	G	A	SNP	CTSL1	ENST00000340342	human	ensembl	69_37n	1	known	missense	c.724	p.V242M	0.969	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL1	HGNC	ENSG00000135047	306	0	0	355	55	13.38	-	-	-	A	90344590	G	A	90344590	3	1	341	1	0	0	0	0	1	0	0	0	4070	1377	48	4	742	4	CTSL1	9	90344590	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	17192466	90344590	50868841	415	36974										
PHF2	0	genome.wustl.edu	37	chr9	96339128	96339128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcttcatgatcgagtgcgacGcctgcaaggactggttccac	12	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	96339128	96339128	G	A	SNP	PHF2	ENST00000359246	human	ensembl	69_37n	1	known	missense	c.73	p.A25T	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724	55	0	0	57	15	20.83	-	-	-	A	96339128	G	A	96339128	3	1	341	1	0	0	0	0	1	0	0	0	11904	1087	38	1	75	1	PHF2	9	96339128	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5994538	96339128	44874303	416	36975										
C9orf3	0	genome.wustl.edu	37	chr9	97535372	97535372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgccatgtcaacatggcagGctacagttcgagcagctgca	11	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	97535372	97535372	G	A	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.886	p.A296T	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	231	0	0	117	23	16.43	-	-	-	A	97535372	G	A	97535372	3	1	341	1	0	0	0	0	1	0	0	0	2502	1203	42	4	892	4	C9orf3	9	97535372	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1196244	97535372	43678059	417	36976										
ZNF782	0	genome.wustl.edu	37	chr9	99581357	99581357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaattacggttgaaacttttTccatattcaaagggtttcac	7	7	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	99581357	99581357	T	C	SNP	ZNF782	ENST00000289032	human	ensembl	69_37n	-1	putative	missense	c.913	p.K305E	0.995	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF782	HGNC	ENSG00000196597	56	0	0	26	5	16.13	-	-	-	C	99581357	T	C	99581357	3	2	341	1	0	0	0	0	1	0	0	0	18248	1770	62	5	1155	5	ZNF782	9	99581357	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2045985	99581357	41632074	418	36977										
CTSL2	0	genome.wustl.edu	37	chr9	99798915	99798915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccctgattgccttgaggacGcgaacagtccaccagattct	10	13	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	99798915	99798915	G	A	SNP	CTSL2	ENST00000259470	human	ensembl	69_37n	-1	known	missense	c.511	p.R171C	0.278	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL2	HGNC	ENSG00000136943	258	0	0	282	55	16.32	-	-	-	A	99798915	G	A	99798915	3	1	341	1	0	0	0	0	1	0	0	0	4071	1087	38	1	509	1	CTSL2	9	99798915	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	217558	99798915	41414516	419	36978										
TBC1D2	0	genome.wustl.edu	37	chr9	100971232	100971232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttcacggggtactcctgccCgcagtagctgcttgagctcg	13	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	100971232	100971232	C	T	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.1868	p.R623Q	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	51	0	0	66	32	32	-	-	-	T	100971232	C	T	100971232	3	4	341	1	0	0	0	0	1	0	0	0	15700	652	23	1	905	1	TBC1D2	9	100971232	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1172317	100971232	40242199	420	36979										
TBC1D2	0	genome.wustl.edu	37	chr9	100971409	100971409	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtcgggcaccgtcaggaagCcgtactcatcatacttactg	10	12	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	100971409	100971409	C	A	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.1691	p.G564V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	72	0	0	77	11	12.5	-	-	-	A	100971409	C	A	100971409	3	1	341	1	0	0	0	0	1	0	0	0	15700	739	26	4	1082	4	TBC1D2	9	100971409	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	177	100971409	40242022	421	36980										
MUSK	0	genome.wustl.edu	37	chr9	113431242	113431242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttactctggttgccttcagcGgaactgagaaacttccaaaa	8	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	113431242	113431242	G	A	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.58	p.G20R	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	362	0	0	83	16	15.84	-	-	-	A	113431242	G	A	113431242	3	1	341	1	0	0	0	0	1	0	0	0	10061	1117	39	1	60	1	MUSK	9	113431242	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	12459833	113431242	27782189	422	36981										
FKBP15	0	genome.wustl.edu	37	chr9	115928409	115928409	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcatcatctccaaaaaggggCgttgggggcgggcgtccctt	14	11	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	115928409	115928409	C	T	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	silent	c.3609	p.T1203	0.997	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	310	1	0.32	290	40	12.05	-	-	-	T	115928409	C	T	115928409	2	4	341	1	0	0	0	0	0	0	0	1	5951	755	27	1		1	FKBP15	9	115928409	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2497167	115928409	25285022	423	36982										
COL27A1	0	genome.wustl.edu	37	chr9	117044775	117044775	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggacagctgggtgagatgggCgtccctggagaccctggacc	17	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	117044775	117044775	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	silent	c.3810	p.G1270	0.988	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	118	0	0	151	21	12.21	-	-	-	T	117044775	C	T	117044775	2	4	341	1	0	0	0	0	0	0	0	1	3715	755	27	1		1	COL27A1	9	117044775	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1116366	117044775	24168656	424	36983										
MEGF9	0	genome.wustl.edu	37	chr9	123374811	123374811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tattttcctggcagtttaaaCaagcacctaaaagaagcaaa	6	8	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	123374811	123374811	C	T	SNP	MEGF9	ENST00000426959	human	ensembl	69_37n	-1	known	missense	c.1061	p.C354Y	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780	114	0	0	46	14	23.33	-	-	-	T	123374811	C	T	123374811	3	4	341	1	0	0	0	0	1	0	0	0	9535	478	17	4	870	4	MEGF9	9	123374811	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6330036	123374811	17838620	425	36984										
LHX6	0	genome.wustl.edu	37	chr9	124976343	124976343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctgcgcgaactgcgcctgCataacctgcggggcggggag	16	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	124976343	124976343	C	T	SNP	LHX6	ENST00000394319	human	ensembl	69_37n	-1	known	missense	c.789	p.M263I	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX6	HGNC	ENSG00000106852	46	0	0	82	12	12.63	-	-	-	T	124976343	C	T	124976343	3	4	341	1	0	0	0	0	1	0	0	0	8830	710	25	4	464	4	LHX6	9	124976343	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1601532	124976343	16237088	426	36985										
RALGPS1	0	genome.wustl.edu	37	chr9	129957410	129957410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctgcgaggttcagccggagGcccacctgtcctgacacatc	11	15	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	129957410	129957410	G	A	SNP	RALGPS1	ENST00000259351	human	ensembl	69_37n	1	known	silent	c.951	p.R317	1.000	NULL	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828	167	0	0	165	21	11.17	-	-	-	A	129957410	G	A	129957410	2	1	341	1	0	0	0	0	0	0	0	1	13100	1194	42	4		4	RALGPS1	9	129957410	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4981067	129957410	11256021	427	36986										
LRRC8A	0	genome.wustl.edu	37	chr9	131670789	131670789	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtttgacctggtggagctggAggtcctcaagctggagctga	16	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	131670789	131670789	A	G	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	missense	c.1346	p.E449G	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	21	0	0	26	4	13.33	-	-	-	G	131670789	A	G	131670789	3	3	341	1	0	0	0	0	1	0	0	0	9087	304	11	5	1348	5	LRRC8A	9	131670789	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1713379	131670789	9542642	428	36987										
FAM73B	0	genome.wustl.edu	37	chr9	131830166	131830166	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaggggtgagttgctttgtgCtgaaccccgacatcccgggc	15	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	131830166	131830166	C	T	SNP	FAM73B	ENST00000495975	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM73B	HGNC	ENSG00000148343	25	0	0	43	16	27.12	-	-	-	T	131830166	C	T	131830166	1	4	341	0	1	0	0	0	0	0	0	0	5663	812	28	4		4	FAM73B	9	131830166	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	159377	131830166	9383265	429	36988										
CRAT	0	genome.wustl.edu	37	chr9	131857840	131857840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttatagcagacaccgtagcCgtcggggaccacgggcccga	14	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	131857840	131857840	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.1717	p.G573S	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	86	0	0	93	41	30.6	-	-	-	T	131857840	C	T	131857840	3	4	341	1	0	0	0	0	1	0	0	0	3877	652	23	1	167	1	CRAT	9	131857840	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	27674	131857840	9355591	430	36989										
C9orf50	0	genome.wustl.edu	37	chr9	132377802	132377802	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtagcggagcgttgtgtcctGcagggtctcgtcagcgaatc	15	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	132377802	132377802	G	A	SNP	C9orf50	ENST00000372478	human	ensembl	69_37n	-1	known	nonsense	c.841	p.Q281*	0.009	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058	60	0	0	86	64	42.67	-	-	-	A	132377802	G	A	132377802	4	1	341	1	0	0	0	0	0	1	0	0	2512	1328	46	4	470	4	C9orf50	9	132377802	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	519962	132377802	8835629	431	36990										
FIBCD1	0	genome.wustl.edu	37	chr9	133799759	133799759	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagttcaccaggtgagccaTgtggccctggctctcagaga	14	11	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	133799759	133799759	T	C	SNP	FIBCD1	ENST00000372338	human	ensembl	69_37n	-1	known	missense	c.577	p.M193V	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FIBCD1	HGNC	ENSG00000130720	30	0	0	27	7	20.59	-	-	-	C	133799759	T	C	133799759	3	2	341	1	0	0	0	0	1	0	0	0	5930	1464	51	5	828	5	FIBCD1	9	133799759	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1421957	133799759	7413672	432	36991										
SURF4	0	genome.wustl.edu	37	chr9	136231781	136231781	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaccagcaagaccctgcctcCgagctgcatgtactgtttgg	10	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	136231781	136231781	C	A	SNP	SURF4	ENST00000371989	human	ensembl	69_37n	-1	known	nonsense	c.478	p.G160*	0.999	pfam_Surf4	pfam_Surf4	-	no_errors	SURF4	HGNC	ENSG00000148248	121	0	0	94	47	33.33	-	-	-	A	136231781	C	A	136231781	4	1	341	1	0	0	0	0	0	1	0	0	15496	661	23	3	339	3	SURF4	9	136231781	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2432022	136231781	4981650	433	36992										
SLC2A6	0	genome.wustl.edu	37	chr9	136337282	136337282	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgaagaagaagaaaggcaccTggaggccgaaggtgctctgc	15	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	136337282	136337282	T	G	SNP	SLC2A6	ENST00000371899	human	ensembl	69_37n	-1	known	missense	c.1385	p.Q462P	0.995	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326	82	0	0	130	20	13.33	-	-	-	G	136337282	T	G	136337282	3	3	341	1	0	0	0	0	1	0	0	0	14638	1580	55	5	142	5	SLC2A6	9	136337282	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	105501	136337282	4876149	434	36993										
COL5A1	0	genome.wustl.edu	37	chr9	137591925	137591925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acacggggaagcctggcccgGaagactaccccctcttccgg	12	16	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	137591925	137591925	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.448	p.E150K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	53	0	0	62	9	12.68	-	-	-	A	137591925	G	A	137591925	3	1	341	1	0	0	0	0	1	0	0	0	3726	1175	41	2	458	2	COL5A1	9	137591925	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1254643	137591925	3621506	435	36994										
CAMSAP1	0	genome.wustl.edu	37	chr9	138774778	138774778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agactggtgtccctgtaaggCggccacctggtcccctttca	11	14	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	138774778	138774778	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.307	p.A103T	0.093	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	143	0	0	164	35	17.5	-	-	-	T	138774778	C	T	138774778	3	4	341	1	0	0	0	0	1	0	0	0	2636	768	27	1	4565	1	CAMSAP1	9	138774778	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1182853	138774778	2438653	436	36995										
SEC16A	0	genome.wustl.edu	37	chr9	139357507	139357507	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaatcaatcaggtttgcttcAttgggcgacttcccaggaag	10	9	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	139357507	139357507	A	G	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	silent	c.4725	p.N1575	0.331	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	31	0	0	52	19	26.76	-	-	-	G	139357507	A	G	139357507	2	3	341	1	0	0	0	0	0	0	0	1	14074	214	8	5		5	SEC16A	9	139357507	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	582729	139357507	1855924	437	36996										
SEC16A	0	genome.wustl.edu	37	chr9	139358092	139358092	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgagcagtgatgtctgcaaGgccgggctcacaaagaaatg	14	8	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	139358092	139358092	G	T	SNP	SEC16A	ENST00000472305	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC16A	HGNC	ENSG00000148396	100	0	0	176	27	13.3	-	-	-	T	139358092	G	T	139358092	1	4	341	0	1	0	0	0	0	0	0	0	14074	1015	35	4		4	SEC16A	9	139358092	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	585	139358092	1855339	438	36997										
MAMDC4	0	genome.wustl.edu	37	chr9	139753231	139753231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggccgggccgcctggctgcGcagcgagcctctgccggcca	17	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	139753231	139753231	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	1	known	missense	c.3119	p.R1040H	0.861	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	22	0	0	46	8	14.81	-	-	-	A	139753231	G	A	139753231	3	1	341	1	0	0	0	0	1	0	0	0	9275	1087	38	1	2972	1	MAMDC4	9	139753231	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	395139	139753231	1460200	439	36998										
TRAF2	0	genome.wustl.edu	37	chr9	139802645	139802645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggagagaagcctgagctgcCggcattgccgggcaccctgc	15	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	139802645	139802645	C	T	SNP	TRAF2	ENST00000359662	human	ensembl	69_37n	1	known	missense	c.646	p.R216W	0.980	pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF2	HGNC	ENSG00000127191	29	0	0	60	16	21.05	-	-	-	T	139802645	C	T	139802645	3	4	341	1	0	0	0	0	1	0	0	0	16534	643	23	1	504	1	TRAF2	9	139802645	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	49414	139802645	1410786	440	36999										
EXD3	0	genome.wustl.edu	37	chr9	140242594	140242594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accgagacagcggaggctccGtgccagcccctgcagcatgt	13	15	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	9	140242594	140242594	G	A	SNP	EXD3	ENST00000340951	human	ensembl	69_37n	-1	known	missense	c.1927	p.R643W	0.894	pfam_DUF82	pfam_DUF82,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609	41	0	0	58	12	17.14	-	-	-	A	140242594	G	A	140242594	3	1	341	1	0	0	0	0	1	0	0	0	5335	1144	40	1	727	1	EXD3	9	140242594	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	439949	140242594	970837	441	37000										
DIP2C	0	genome.wustl.edu	37	chr10	402276	402276	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccataagactgaagcaaaAggattcaaagaaagaagcag	9	7	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	402276	402276	A	C	SNP	DIP2C	ENST00000540204	human	ensembl	69_37n	-1	known	silent	c.1038	p.P346	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	DIP2C	HGNC	ENSG00000151240	17	0	0	49	10	16.95	-	-	-	C	402276	A	C	402276	2	2	341	1	0	0	0	0	0	0	0	1	4565	87	3	5		5	DIP2C	10	402276	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09		402276	135132471	442	37001										
DIP2C	0	genome.wustl.edu	37	chr10	445105	445105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacctcggccagcaggcagcCgtagaaagccgccatgaagg	13	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	445105	445105	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.1204	p.G402S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	144	0	0	102	15	12.82	-	-	-	T	445105	C	T	445105	3	4	341	1	0	0	0	0	1	0	0	0	4565	652	23	1	3578	1	DIP2C	10	445105	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	42829	445105	135089642	443	37002										
AKR1C2	0	genome.wustl.edu	37	chr10	5043771	5043771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatcttgcttcggatggccaGtccaacctgctcctcattat	7	13	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	5043771	5043771	G	A	SNP	AKR1C2	ENST00000380753	human	ensembl	69_37n	-1	known	silent	c.187	p.L63	0.181	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C2	HGNC	ENSG00000151632	322	0	0	81	10	10.99	-	-	-	A	5043771	G	A	5043771	2	1	341	1	0	0	0	0	0	0	0	1	470	1020	36	4		4	AKR1C2	10	5043771	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4598666	5043771	130490976	444	37003										
CALML3	0	genome.wustl.edu	37	chr10	5567123	5567123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgtttgacaaggatggggaCggctgcatcaccacccgcga	13	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	5567123	5567123	C	T	SNP	CALML3	ENST00000315238	human	ensembl	69_37n	1	known	silent	c.75	p.D25	0.955	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML3	HGNC	ENSG00000178363	100	0	0	183	24	11.59	-	-	-	T	5567123	C	T	5567123	2	4	341	1	0	0	0	0	0	0	0	1	2612	535	19	1		1	CALML3	10	5567123	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	523352	5567123	129967624	445	37004										
GDI2	0	genome.wustl.edu	37	chr10	5808032	5808032	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcaaagtcaaactctgatccTgtcatcctcttatagatgtt	5	10	5	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	5808032	5808032	T	C	SNP	GDI2	ENST00000380132	human	ensembl	69_37n	-1	known	silent	c.1287	p.T429	0.997	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608	473	0	0	220	30	11.95	-	-	-	C	5808032	T	C	5808032	2	2	341	1	0	0	0	0	0	0	0	1	6373	1567	55	5		5	GDI2	10	5808032	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	240909	5808032	129726715	446	37005										
GPR158	0	genome.wustl.edu	37	chr10	25886809	25886809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctcgaagaagggcctaggtCgttccatcatgagacgcatt	12	10	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	25886809	25886809	C	T	SNP	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	missense	c.2254	p.R752C	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	69	0	0	12	9	42.86	-	-	-	T	25886809	C	T	25886809	3	4	341	1	0	0	0	0	1	0	0	0	6713	884	31	1	2296	1	GPR158	10	25886809	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	20078777	25886809	109647938	447	37006										
ANKRD26	0	genome.wustl.edu	37	chr10	27301888	27301888	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactaagttttctcttggaaTaagttttctgttgagatcta	7	6	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	27301888	27301888	T	C	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.4924	p.I1642V	0.000	pfam_DUF3496	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	148	0	0	31	8	20.51	-	-	-	C	27301888	T	C	27301888	3	2	341	1	0	0	0	0	1	0	0	0	654	1406	49	5	268	5	ANKRD26	10	27301888	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1415079	27301888	108232859	448	37007										
ZNF438	0	genome.wustl.edu	37	chr10	31139119	31139119	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctgggtggacatccccagcAgcttggagttgatggagggt	16	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	31139119	31139119	A	G	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.215	p.L72P	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	193	0	0	182	31	14.42	-	-	-	G	31139119	A	G	31139119	3	3	341	1	0	0	0	0	1	0	0	0	18006	188	7	5	2279	5	ZNF438	10	31139119	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3837231	31139119	104395628	449	37008										
CREM	0	genome.wustl.edu	37	chr10	35467876	35467876	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaaggtgtaattgattctcaTaaacgtagagaaatcctttc	8	6	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	35467876	35467876	T	C	SNP	CREM	ENST00000395895	human	ensembl	69_37n	1	known	silent	c.375	p.H125	0.997	pfam_Coactivator_CBP_pKID,pfscan_Coactivator_CBP_pKID,prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREM	HGNC	ENSG00000095794	50	0	0	46	8	14.81	-	-	-	C	35467876	T	C	35467876	2	2	341	1	0	0	0	0	0	0	0	1	3898	1403	49	5		5	CREM	10	35467876	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	4328757	35467876	100066871	450	37009										
ZNF248	0	genome.wustl.edu	37	chr10	38121071	38121071	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtacattcatagggcttctcTcctgtgtgtgttctctgatg	10	9	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	38121071	38121071	T	C	SNP	ZNF248	ENST00000357328	human	ensembl	69_37n	-1	known	silent	c.1212	p.G404	0.967	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105	166	0	0	35	6	14.63	-	-	-	C	38121071	T	C	38121071	2	2	341	1	0	0	0	0	0	0	0	1	17889	1538	54	5		5	ZNF248	10	38121071	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2653195	38121071	97413676	451	37010										
ZNF248	0	genome.wustl.edu	37	chr10	38121094	38121094	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtgtgtgttctctgatgttGagtgaggtttgacttctccc	12	7	2	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	38121094	38121094	G	C	SNP	ZNF248	ENST00000357328	human	ensembl	69_37n	-1	known	missense	c.1189	p.Q397E	0.015	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105	152	0	0	40	10	20	-	-	-	C	38121094	G	C	38121094	3	2	341	1	0	0	0	0	1	0	0	0	17889	1299	45	2	554	2	ZNF248	10	38121094	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	23	38121094	97413653	452	37011										
ZNF37A	0	genome.wustl.edu	37	chr10	38406330	38406330	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tatttcagaattaattaataCcagtagaaactattcaataa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	38406330	38406330	C	-	DEL	ZNF37A	ENST00000351773	human	ensembl	69_37n	1	known	frame_shift_del	c.251	p.S85fs	0.042	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407	37	0	0	5	2	28.57	-	-	-	-	38406330	C	-	38406330	7	5	341	1	0	1	0	1	0	0	0	0	17968	507	18	0	265	0	ZNF37A	10	38406330	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	285236	38406330	97128417	453	37012										
ZNF485	0	genome.wustl.edu	37	chr10	44112691	44112691	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctcaggccttgttgaacaTcagagactccatactgggga	11	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	44112691	44112691	T	C	SNP	ZNF485	ENST00000361807	human	ensembl	69_37n	1	known	silent	c.1200	p.H400	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	38	0	0	66	14	17.28	-	-	-	C	44112691	T	C	44112691	2	2	341	1	0	0	0	0	0	0	0	1	18034	1432	50	5		5	ZNF485	10	44112691	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5706361	44112691	91422056	454	37013										
ARHGAP22	0	genome.wustl.edu	37	chr10	49663123	49663123	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggggaccacgggctcgggGagctcccgcaggtacagctt	16	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	49663123	49663123	G	C	SNP	ARHGAP22	ENST00000417912	human	ensembl	69_37n	-1	known	silent	c.762	p.L254	0.998	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805	41	0	0	77	16	17.2	-	-	-	C	49663123	G	C	49663123	2	2	341	1	0	0	0	0	0	0	0	1	874	1161	41	2		2	ARHGAP22	10	49663123	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5550432	49663123	85871624	455	37014										
PCDH15	0	genome.wustl.edu	37	chr10	55663026	55663026	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactctgagtacagaagtaaAcattcttgcatcttcagata	6	9	4	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	55663026	55663026	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.3478	p.F1160L	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	105	0	0	26	4	13.33	-	-	-	G	55663026	A	G	55663026	3	3	341	1	0	0	0	0	1	0	0	0	11584	43	2	5	4040	5	PCDH15	10	55663026	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5999903	55663026	79871721	456	37015										
CCAR1	0	genome.wustl.edu	37	chr10	70516059	70516059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcagagattcgctaccatcGccctgaggagacccacaagg	11	13	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	70516059	70516059	G	A	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.1655	p.R552H	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	245	0	0	61	51	45.54	-	-	-	A	70516059	G	A	70516059	3	1	341	1	0	0	0	0	1	0	0	0	2755	1087	38	1	1705	1	CCAR1	10	70516059	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	14853033	70516059	65018688	457	37016										
KIAA1279	0	genome.wustl.edu	37	chr10	70764842	70764842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctactgagcgttttcttcCtgaagaagagaaacttactg	8	9	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	70764842	70764842	C	T	SNP	KIAA1279	ENST00000361983	human	ensembl	69_37n	1	known	missense	c.566	p.P189L	1.000	NULL	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	148	0	0	89	15	14.29	-	-	-	T	70764842	C	T	70764842	3	4	341	1	0	0	0	0	1	0	0	0	8273	681	24	4	576	4	KIAA1279	10	70764842	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	248783	70764842	64769905	458	37017										
UNC5B	0	genome.wustl.edu	37	chr10	73051401	73051401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcagatggggctgacctgCtgggggtcttgccgcctggc	18	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	73051401	73051401	C	T	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	silent	c.1507	p.L503	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	72	0	0	96	14	12.73	-	-	-	T	73051401	C	T	73051401	2	4	341	1	0	0	0	0	0	0	0	1	17089	796	28	4		4	UNC5B	10	73051401	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2286559	73051401	62483346	459	37018										
CDH23	0	genome.wustl.edu	37	chr10	73485220	73485220	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgggagcggaactcatcccaCgtgctgatagtggaggccta	14	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	73485220	73485220	C	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	silent	c.3531	p.H1177	0.977	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	101	0	0	120	15	11.11	-	-	-	T	73485220	C	T	73485220	2	4	341	1	0	0	0	0	0	0	0	1	3137	535	19	1		1	CDH23	10	73485220	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	433819	73485220	62049527	460	37019										
SYNPO2L	0	genome.wustl.edu	37	chr10	75408536	75408536	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaacataagtacccctttggAgtgggggttgggggctgcag	16	7	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	75408536	75408536	A	G	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	missense	c.874	p.S292P	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	77	0	0	137	22	13.84	-	-	-	G	75408536	A	G	75408536	3	3	341	1	0	0	0	0	1	0	0	0	15550	304	11	5	2063	5	SYNPO2L	10	75408536	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1923316	75408536	60126211	461	37020										
VCL	0	genome.wustl.edu	37	chr10	75865016	75865016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttccgaggatcccaagttccGtgaggctgtgaaagctgcct	12	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	75865016	75865016	G	A	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	missense	c.2339	p.R780H	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	56	0	0	39	9	18.75	-	-	-	A	75865016	G	A	75865016	3	1	341	1	0	0	0	0	1	0	0	0	17236	1145	40	1	2401	1	VCL	10	75865016	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	456480	75865016	59669731	462	37021										
DUSP13	0	genome.wustl.edu	37	chr10	76855525	76855525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgggtgattcccagctggaTcagcttgctcttgtcccggg	14	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	76855525	76855525	T	C	SNP	DUSP13	ENST00000491677	human	ensembl	69_37n	-1	known	missense	c.589	p.I197V	0.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	195	0	0	204	34	14.29	-	-	-	C	76855525	T	C	76855525	3	2	341	1	0	0	0	0	1	0	0	0	4848	1435	50	5	402	5	DUSP13	10	76855525	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	990509	76855525	58679222	463	37022										
WAPAL	0	genome.wustl.edu	37	chr10	88206188	88206188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttctgctagctgggctgcccGctctcgctcaaggaatagct	11	13	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	88206188	88206188	G	A	SNP	WAPAL	ENST00000342368	human	ensembl	69_37n	-1	known	missense	c.3388	p.R1130W	1.000	superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650	151	1	0.66	84	12	12.37	-	-	-	A	88206188	G	A	88206188	3	1	341	1	0	0	0	0	1	0	0	0	17345	1086	38	1	455	1	WAPAL	10	88206188	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	11350663	88206188	47328559	464	37023										
NOC3L	0	genome.wustl.edu	37	chr10	96117831	96117831	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaatgattataacccaaatgAagtattacctagaagaaaga	7	5	0	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	96117831	96117831	A	C	SNP	NOC3L	ENST00000463649	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145	100	0	0	71	19	21.11	-	-	-	C	96117831	A	C	96117831	1	2	341	0	1	0	0	0	0	0	0	0	10586	261	9	5		5	NOC3L	10	96117831	RNA	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	7911643	96117831	39416916	465	37024										
CRTAC1	0	genome.wustl.edu	37	chr10	99683088	99683088	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caccacgggccacgttgaccTcatcgctcaggatgtcttcc	9	16	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	99683088	99683088	T	C	SNP	CRTAC1	ENST00000370597	human	ensembl	69_37n	-1	known	missense	c.491	p.E164G	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	-	no_errors	CRTAC1	HGNC	ENSG00000095713	209	0	0	130	16	10.96	-	-	-	C	99683088	T	C	99683088	3	2	341	1	0	0	0	0	1	0	0	0	3926	1551	54	5	1542	5	CRTAC1	10	99683088	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3565257	99683088	35851659	466	37025										
HPS1	0	genome.wustl.edu	37	chr10	100193844	100193844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgcgccaggtctgggggccGcagcctgggggcagagccag	19	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	100193844	100193844	G	A	SNP	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	missense	c.403	p.R135W	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	10	0	0	25	7	21.88	-	-	-	A	100193844	G	A	100193844	3	1	341	1	0	0	0	0	1	0	0	0	7390	1086	38	1	1797	1	HPS1	10	100193844	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	510756	100193844	35340903	467	37026										
PDZD7	0	genome.wustl.edu	37	chr10	102781608	102781608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcacctccacggcctggcTgtggctgatgtcgtcaaacc	11	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	102781608	102781608	T	C	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	missense	c.814	p.S272G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	430	0	0	521	68	11.49	-	-	-	C	102781608	T	C	102781608	3	2	341	1	0	0	0	0	1	0	0	0	11777	1580	55	5	759	5	PDZD7	10	102781608	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2587764	102781608	32753139	468	37027										
FGF8	0	genome.wustl.edu	37	chr10	103530238	103530238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacctcacgctggtgctgccGcgtcttggagcccttgcggg	15	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	103530238	103530238	G	A	SNP	FGF8	ENST00000320185	human	ensembl	69_37n	-1	known	missense	c.583	p.R195W	0.798	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF8	HGNC	ENSG00000107831	75	0	0	134	19	12.42	-	-	-	A	103530238	G	A	103530238	3	1	341	1	0	0	0	0	1	0	0	0	5904	1086	38	1	155	1	FGF8	10	103530238	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	748630	103530238	32004509	469	37028										
NFKB2	0	genome.wustl.edu	37	chr10	104157082	104157082	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taacaacctgggtgtcctgcAtgtgactaagaagaacatga	10	8	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	104157082	104157082	A	G	SNP	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	missense	c.419	p.H140R	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	108	0	0	138	16	10.39	-	-	-	G	104157082	A	G	104157082	3	3	341	1	0	0	0	0	1	0	0	0	10448	217	8	5	441	5	NFKB2	10	104157082	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	626844	104157082	31377665	470	37029										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105372694	105372694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtcctgtcaggaacgcccaCggcactgccattggaggcat	12	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	105372694	105372694	C	T	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	missense	c.1174	p.V392M	0.023	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	83	0	0	115	16	12.21	-	-	-	T	105372694	C	T	105372694	3	4	341	1	0	0	0	0	1	0	0	0	14345	536	19	1	2243	1	SH3PXD2A	10	105372694	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1215612	105372694	30162053	471	37030										
CCDC147	0	genome.wustl.edu	37	chr10	106207523	106207523	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctggacctgaggctgcggAacagctgaagctgtaccgac							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	106207523	106207523	A	-	DEL	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	frame_shift_del	c.2324	p.E775fs	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	92	0	0	14	2	11.76	-	-	-	-	106207523	A	-	106207523	7	5	341	1	0	1	0	1	0	0	0	0	2806	246	9	0	2386	0	CCDC147	10	106207523	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	834829	106207523	29327224	472	37031										
VWA2	0	genome.wustl.edu	37	chr10	116014800	116014800	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgacggtctggacatcagccCcgagagggtgagtgcaagtc	15	10	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	116014800	116014800	C	A	SNP	VWA2	ENST00000392982	human	ensembl	69_37n	1	known	missense	c.254	p.P85H	0.007	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816	169	0	0	127	28	18.06	-	-	-	A	116014800	C	A	116014800	3	1	341	1	0	0	0	0	1	0	0	0	17336	623	22	4	264	4	VWA2	10	116014800	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	9807277	116014800	19519947	473	37032										
TACC2	0	genome.wustl.edu	37	chr10	123997481	123997481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctctctgaaactagatcatAaccaaggagagagaggtctc	9	9	4	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	123997481	123997481	A	G	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.8277	p.I2759M	0.997	pfam_TACC	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	225	0	0	144	27	15.79	-	-	-	G	123997481	A	G	123997481	3	3	341	1	0	0	0	0	1	0	0	0	15594	352	13	5	8415	5	TACC2	10	123997481	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	7982681	123997481	11537266	474	37033										
BUB3	0	genome.wustl.edu	37	chr10	124920053	124920053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcctgaaataccagactcGctgcatacgagcgtttccaa	8	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	124920053	124920053	G	A	SNP	BUB3	ENST00000368865	human	ensembl	69_37n	1	known	missense	c.548	p.R183H	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BUB3	HGNC	ENSG00000154473	211	0	0	116	15	11.36	-	-	-	A	124920053	G	A	124920053	3	1	341	1	0	0	0	0	1	0	0	0	1581	1087	38	1	562	1	BUB3	10	124920053	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	922572	124920053	10614694	475	37034										
ZRANB1	0	genome.wustl.edu	37	chr10	126670316	126670316	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agattgggaatcatggtattCtcagagctttggtttacatt	10	5	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	126670316	126670316	C	A	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.1466	p.S489Y	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	218	0	0	71	16	18.39	-	-	-	A	126670316	C	A	126670316	3	1	341	1	0	0	0	0	1	0	0	0	18315	913	32	2	1488	2	ZRANB1	10	126670316	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1750263	126670316	8864431	476	37035										
BNIP3	0	genome.wustl.edu	37	chr10	133787312	133787312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctacctgtcacagtgagagCtcttggagctactccgtcca	9	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	133787312	133787312	C	T	SNP	BNIP3	ENST00000368636	human	ensembl	69_37n	-1	known	missense	c.182	p.S61N	1.000	pfam_BNIP3	pfam_BNIP3	-	no_errors	BNIP3	HGNC	ENSG00000176171	145	0	0	181	38	17.35	-	-	-	T	133787312	C	T	133787312	3	4	341	1	0	0	0	0	1	0	0	0	1483	797	28	4	422	4	BNIP3	10	133787312	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7116996	133787312	1747435	477	37036										
JAKMIP3	0	genome.wustl.edu	37	chr10	133962991	133962991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggaagagccccctccaggtgTactgcgaggccgaaggtgtg	16	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	10	133962991	133962991	T	C	SNP	JAKMIP3	ENST00000298622	human	ensembl	69_37n	1	known	missense	c.1924	p.Y642H	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	38	0	0	64	51	43.22	-	-	-	C	133962991	T	C	133962991	3	2	341	1	0	0	0	0	1	0	0	0	7996	1638	57	5	1978	5	JAKMIP3	10	133962991	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	175679	133962991	1571756	478	37037										
B4GALNT4	0	genome.wustl.edu	37	chr11	380165	380165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acgaaccgggaacttcgagcGctccgccgggctgcaggcgg	16	14	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	380165	380165	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	69_37n	1	known	missense	c.2678	p.R893H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	18	0	0	29	11	27.5	-	-	-	A	380165	G	A	380165	3	1	341	1	0	0	0	0	1	0	0	0	1273	1087	38	1	2744	1	B4GALNT4	11	380165	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		380165	134626351	479	37038										
PTDSS2	0	genome.wustl.edu	37	chr11	473896	473896	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtttgttctttatttgcagaGgtattgtggccagtattttg	11	4	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	473896	473896	G	T	SNP	PTDSS2	ENST00000308020	human	ensembl	69_37n	1	known	missense	c.286	p.G96C	1.000	NULL	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915	359	0	0	559	96	14.61	-	-	-	T	473896	G	T	473896	3	4	341	1	0	0	0	0	1	0	0	0	12817	1014	35	4	296	4	PTDSS2	11	473896	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	93731	473896	134532620	480	37039										
MUC6	0	genome.wustl.edu	37	chr11	1026075	1026075	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgatgacgtggccctccccGtagagggtgcaggtggatgg	18	9	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	1026075	1026075	G	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	silent	c.2613	p.Y871	0.986	pfam_VWF_type-D,smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	212	1	0.47	225	82	26.62	-	-	-	A	1026075	G	A	1026075	2	1	341	1	0	0	0	0	0	0	0	1	10052	1140	40	1		1	MUC6	11	1026075	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	552179	1026075	133980441	481	37040										
CTSD	0	genome.wustl.edu	37	chr11	1774867	1774867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatgtccatgcccatgaagcCgctcaggcagagggtcttcc	12	13	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	1774867	1774867	C	T	SNP	CTSD	ENST00000236671	human	ensembl	69_37n	-1	known	missense	c.1105	p.G369S	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSD	HGNC	ENSG00000117984	42	0	0	41	9	18	-	-	-	T	1774867	C	T	1774867	3	4	341	1	0	0	0	0	1	0	0	0	4064	652	23	1	137	1	CTSD	11	1774867	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	748792	1774867	133231649	482	37041										
PGAP2	0	genome.wustl.edu	37	chr11	3846609	3846609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttgtcttaaccaacatggCgttccacatgacggcctggt	10	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	3846609	3846609	C	T	SNP	PGAP2	ENST00000278243	human	ensembl	69_37n	1	known	missense	c.869	p.A290V	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985	349	0	0	271	85	23.81	-	-	-	T	3846609	C	T	3846609	3	4	341	1	0	0	0	0	1	0	0	0	11852	768	27	1	1070	1	PGAP2	11	3846609	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2071742	3846609	131159907	483	37042										
FAM160A2	0	genome.wustl.edu	37	chr11	6245408	6245408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acatctggtaagtgtggttgCgcacagcactgagatcgtct	12	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	6245408	6245408	C	T	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.209	p.R70H	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	37	0	0	23	5	17.86	-	-	-	T	6245408	C	T	6245408	3	4	341	1	0	0	0	0	1	0	0	0	5509	768	27	1	2791	1	FAM160A2	11	6245408	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2398799	6245408	128761108	484	37043										
OR10A6	0	genome.wustl.edu	37	chr11	7949269	7949269	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcttctcaacacagtcagAttgtgtgtaaaaccactcgc	8	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	7949269	7949269	A	T	SNP	OR10A6	ENST00000309838	human	ensembl	69_37n	-1	known	missense	c.941	p.I314N	0.046	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393	126	0	0	5	3	37.5	-	-	-	T	7949269	A	T	7949269	3	4	341	1	0	0	0	0	1	0	0	0	10967	333	12	5	6	5	OR10A6	11	7949269	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1703861	7949269	127057247	485	37044										
NRIP3	0	genome.wustl.edu	37	chr11	9009803	9009803	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacaggttggtttccatgagGcgcctctgcagaatattatg	12	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	9009803	9009803	G	T	SNP	NRIP3	ENST00000309166	human	ensembl	69_37n	-1	known	silent	c.201	p.R67	1.000	NULL	pfam_Peptidase_aspartic_euk-pred,superfamily_Peptidase_aspartic	-	no_errors	NRIP3	HGNC	ENSG00000175352	124	0	0	67	11	14.1	-	-	-	T	9009803	G	T	9009803	2	4	341	1	0	0	0	0	0	0	0	1	10727	1190	42	4		4	NRIP3	11	9009803	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1060534	9009803	125996713	486	37045										
ZNF143	0	genome.wustl.edu	37	chr11	9547007	9547007	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caactttgtacactgtgcttCgtgtataacctttacaggag	8	9	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	9547007	9547007	C	T	SNP	ZNF143	ENST00000447186	human	ensembl	69_37n	1	putative	silent	c.483	p.F161	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF143	HGNC	ENSG00000166478	143	0	0	65	21	24.42	-	-	-	T	9547007	C	T	9547007	2	4	341	1	0	0	0	0	0	0	0	1	17828	899	31	1		1	ZNF143	11	9547007	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	537204	9547007	125459509	487	37046										
CTR9	0	genome.wustl.edu	37	chr11	10800562	10800562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctgataatgagggttctggCcaaggctctggaaatgaatc	12	7	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	10800562	10800562	C	T	SNP	CTR9	ENST00000361367	human	ensembl	69_37n	1	known	silent	c.3432	p.G1144	0.022	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730	48	0	0	24	4	14.29	-	-	-	T	10800562	C	T	10800562	2	4	341	1	0	0	0	0	0	0	0	1	4056	726	26	4		4	CTR9	11	10800562	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1253555	10800562	124205954	488	37047										
ABCC8	0	genome.wustl.edu	37	chr11	17452559	17452559	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccagggtgtgggtccctcCcacactggaaacgctcagca	12	15	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	17452559	17452559	C	A	SNP	ABCC8	ENST00000528202	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.019	-	-	-	no_errors	ABCC8	HGNC	ENSG00000006071	58	0	0	46	7	13.21	-	-	-	A	17452559	C	A	17452559	1	1	341	0	1	0	0	0	0	0	0	0	58	638	22	4		4	ABCC8	11	17452559	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6651997	17452559	117553957	489	37048										
SLC6A5	0	genome.wustl.edu	37	chr11	20636289	20636289	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcgactttctgcatgaccgcTtatcccaacgtgacaatggt	8	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	20636289	20636289	T	C	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	silent	c.1050	p.A350	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	270	0	0	147	26	14.94	-	-	-	C	20636289	T	C	20636289	2	2	341	1	0	0	0	0	0	0	0	1	14776	1596	56	5		5	SLC6A5	11	20636289	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3183730	20636289	114370227	490	37049										
BBOX1	0	genome.wustl.edu	37	chr11	27078797	27078797	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagtgaattccaggctgattGgctgaagaaaagatgctttt	11	6	0	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	27078797	27078797	G	A	SNP	BBOX1	ENST00000263182	human	ensembl	69_37n	1	known	nonsense	c.269	p.W90*	1.000	tigrfam_2-oxoglut_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_2-oxoglut_dOase	-	no_errors	BBOX1	HGNC	ENSG00000129151	160	0	0	47	7	12.96	-	-	-	A	27078797	G	A	27078797	4	1	341	1	0	0	0	0	0	1	0	0	1338	1357	47	4	275	4	BBOX1	11	27078797	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6442508	27078797	107927719	491	37050										
KCNA4	0	genome.wustl.edu	37	chr11	30033810	30033810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catcttcactatagtaaaacCttccctcctcttcctcctct	1	17	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	30033810	30033810	C	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.416	p.R139K	1.000	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	76	0	0	67	10	12.82	-	-	-	T	30033810	C	T	30033810	3	4	341	1	0	0	0	0	1	0	0	0	8059	681	24	4	1549	4	KCNA4	11	30033810	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2955013	30033810	104972706	492	37051										
C1QTNF4	0	genome.wustl.edu	37	chr11	47611499	47611499	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgtagccgtcgtggtcgtgGctgagcagccagacggcgtc	16	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	47611499	47611499	G	A	SNP	C1QTNF4	ENST00000302514	human	ensembl	69_37n	-1	known	silent	c.864	p.S288	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247	163	0	0	248	30	10.79	-	-	-	A	47611499	G	A	47611499	2	1	341	1	0	0	0	0	0	0	0	1	1984	1194	42	4		4	C1QTNF4	11	47611499	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	17577689	47611499	87395017	493	37052										
OR10AG1	0	genome.wustl.edu	37	chr11	55735723	55735723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgagtccaaatgtccatgaGcattcttgggataatgattg	10	7	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	55735723	55735723	G	A	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	missense	c.217	p.L73F	0.902	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	73	0	0	22	3	12	-	-	-	A	55735723	G	A	55735723	3	1	341	1	0	0	0	0	1	0	0	0	10970	971	34	4	691	4	OR10AG1	11	55735723	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	8124224	55735723	79270793	494	37053										
OR9G4	0	genome.wustl.edu	37	chr11	56510933	56510933	+	Frame_Shift_Del	DEL	A	A	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agtgtaggctacaacacaggAaaaaaacagctgagccccac							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	56510933	56510933	A	-	DEL	OR9G4	ENST00000302957	human	ensembl	69_37n	-1	known	frame_shift_del	c.355	p.S119fs	0.823	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9G4	HGNC	ENSG00000172457	68	0	0	21	6	22.22	-	-	-	-	56510933	A	-	56510933	7	5	341	1	0	1	0	1	0	0	0	0	11324	246	9	0	631	0	OR9G4	11	56510933	Frame_Shift_Del	DEL	A	TCGA-AO-A128-01A-11D-A10M-09	775210	56510933	78495583	495	37054										
SSRP1	0	genome.wustl.edu	37	chr11	57099320	57099320	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcgggtagagcagtcctgAgcttgccttgtaggaacagg	15	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	57099320	57099320	A	G	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	missense	c.1045	p.S349P	1.000	pfam_SSRP1_dom,pfam_DUF1747,prints_SSrcognition	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136	167	0	0	180	27	12.92	-	-	-	G	57099320	A	G	57099320	3	3	341	1	0	0	0	0	1	0	0	0	15285	304	11	5	1120	5	SSRP1	11	57099320	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	588387	57099320	77907196	496	37055										
DDB1	0	genome.wustl.edu	37	chr11	61093160	61093160	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcctgtccaatgatgatggCccccccaaagggctctggga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	61093160	61093160	C	-	DEL	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	frame_shift_del	c.685	p.A229fs	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	144	0	0	87	10	10.1	-	-	-	-	61093160	C	-	61093160	7	5	341	1	0	1	0	1	0	0	0	0	4354	739	26	0	2825	0	DDB1	11	61093160	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	3993840	61093160	73913356	497	37056										
SYT7	0	genome.wustl.edu	37	chr11	61295496	61295496	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagatcttgacgaaggggtcGctggtgccgctgaagtcctt	14	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	61295496	61295496	G	A	SNP	SYT7	ENST00000263846	human	ensembl	69_37n	-1	known	silent	c.513	p.S171	0.899	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT7	HGNC	ENSG00000011347	273	0	0	317	47	12.81	-	-	-	A	61295496	G	A	61295496	2	1	341	1	0	0	0	0	0	0	0	1	15571	1078	38	1		1	SYT7	11	61295496	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	202336	61295496	73711020	498	37057										
DAGLA	0	genome.wustl.edu	37	chr11	61490938	61490938	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaactgggtagtcatcctcAgtgtgtgcatcactgtcctc	10	12	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	61490938	61490938	A	G	SNP	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	missense	c.442	p.S148G	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	159	0	0	205	33	13.81	-	-	-	G	61490938	A	G	61490938	3	3	341	1	0	0	0	0	1	0	0	0	4258	188	7	5	456	5	DAGLA	11	61490938	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	195442	61490938	73515578	499	37058										
INCENP	0	genome.wustl.edu	37	chr11	61908223	61908223	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagtgagctggacgaggagcAgcacctggaggatgaggagc	19	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	61908223	61908223	A	G	SNP	INCENP	ENST00000394818	human	ensembl	69_37n	1	known	missense	c.1391	p.Q464R	0.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	63	0	0	83	31	26.96	-	-	-	G	61908223	A	G	61908223	3	3	341	1	0	0	0	0	1	0	0	0	7787	188	7	5	1421	5	INCENP	11	61908223	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	417285	61908223	73098293	500	37059										
AHNAK	0	genome.wustl.edu	37	chr11	62289327	62289327	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggcattttcactttgggcaTttttaagtgccagtctgggc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	62289327	62289327	T	-	DEL	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	frame_shift_del	c.12562	p.M4188fs	0.997	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	238	0	0	120	22	15.28	-	-	-	-	62289327	T	-	62289327	7	5	341	1	0	1	0	1	0	0	0	0	414	1493	52	0	5230	0	AHNAK	11	62289327	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	381104	62289327	72717189	501	37060										
AHNAK	0	genome.wustl.edu	37	chr11	62293764	62293764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtttaagtcaatatcaggcaTggagatcttgggggctttga	13	5	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	62293764	62293764	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.8125	p.M2709V	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	393	0	0	198	86	30.28	-	-	-	C	62293764	T	C	62293764	3	2	341	1	0	0	0	0	1	0	0	0	414	1464	51	5	9667	5	AHNAK	11	62293764	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	4437	62293764	72712752	502	37061										
GANAB	0	genome.wustl.edu	37	chr11	62398080	62398081	+	Frame_Shift_Del	DEL	CT	CT	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcaaccccttaccttccgcCtcttagaagccaagcgctca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	62398080	62398081	CT	-	DEL	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	frame_shift_del	c.1445_1444	p.R482fs	1.000:1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	137	0	0	100	32	24.06	-	-	-	-	62398081	CT	-	62398080	7	5	341	1	0	1	0	1	0	0	0	0	6283	681	24	0	1511	0	GANAB	11	62398080	Frame_Shift_Del	DEL	CT	TCGA-AO-A128-01A-11D-A10M-09	104316	62398080	72608436	503	37062										
HNRNPUL2	0	genome.wustl.edu	37	chr11	62487606	62487606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacaaccaccaccactttccGagagaaggtcttgaacagca	8	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	62487606	62487606	G	A	SNP	HNRNPUL2	ENST00000301785	human	ensembl	69_37n	-1	known	missense	c.1669	p.R557W	0.999	pfam_Chromatin_KTI12	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753	659	1	0.15	389	74	15.98	-	-	-	A	62487606	G	A	62487606	3	1	341	1	0	0	0	0	1	0	0	0	7326	1057	37	1	594	1	HNRNPUL2	11	62487606	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	89526	62487606	72518910	504	37063										
NXF1	0	genome.wustl.edu	37	chr11	62567879	62567879	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggactggtctcggaaggtgTcacacagggagtttccatcg	14	9	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	62567879	62567879	T	G	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.986	p.D329A	0.999	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	258	0	0	199	87	30.42	-	-	-	G	62567879	T	G	62567879	3	3	341	1	0	0	0	0	1	0	0	0	10855	1667	58	5	976	5	NXF1	11	62567879	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	80273	62567879	72438637	505	37064										
NRXN2	0	genome.wustl.edu	37	chr11	64390490	64390490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctggccctggaaggggcggCcctgatcccggcccccgatc	14	18	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	64390490	64390490	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.3908	p.G1303D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	13	0	0	17	5	22.73	-	-	-	T	64390490	C	T	64390490	3	4	341	1	0	0	0	0	1	0	0	0	10739	739	26	4	1242	4	NRXN2	11	64390490	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1822611	64390490	70616026	506	37065										
SCYL1	0	genome.wustl.edu	37	chr11	65293598	65293598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctccttttgcccccagaaaGccctcagcttcctggtcaac	7	17	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	65293598	65293598	G	T	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	missense	c.379	p.A127S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	95	0	0	116	20	14.6	-	-	-	T	65293598	G	T	65293598	3	4	341	1	0	0	0	0	1	0	0	0	14035	971	34	4	393	4	SCYL1	11	65293598	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	903108	65293598	69712918	507	37066										
PCNXL3	0	genome.wustl.edu	37	chr11	65394380	65394380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcctctccacacaggtgccGcccaggtgatgtggtttgag	14	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	65394380	65394380	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.3385	p.A1129T	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	193	0	0	201	61	23.28	-	-	-	A	65394380	G	A	65394380	3	1	341	1	0	0	0	0	1	0	0	0	11666	1087	38	1	3467	1	PCNXL3	11	65394380	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	100782	65394380	69612136	508	37067										
KAT5	0	genome.wustl.edu	37	chr11	65481120	65481120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgcccagcgagacagccccGgcctcggtttttccccaggt	12	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	65481120	65481120	G	A	SNP	KAT5	ENST00000530605	human	ensembl	69_37n	1	novel	missense	c.484	p.G162S	0.710	NULL	pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KAT5	HGNC	ENSG00000172977	38	0	0	55	8	12.7	-	-	-	A	65481120	G	A	65481120	3	1	341	1	0	0	0	0	1	0	0	0	8037	1103	39	1	615	1	KAT5	11	65481120	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	86740	65481120	69525396	509	37068										
OVOL1	0	genome.wustl.edu	37	chr11	65562191	65562191	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcaagagacacgtccgaacTcacactggtaagtggaagcc	10	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	65562191	65562191	T	C	SNP	OVOL1	ENST00000335987	human	ensembl	69_37n	1	known	silent	c.501	p.T167	0.953	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL1	HGNC	ENSG00000172818	113	0	0	131	16	10.88	-	-	-	C	65562191	T	C	65562191	2	2	341	1	0	0	0	0	0	0	0	1	11399	1538	54	5		5	OVOL1	11	65562191	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	81071	65562191	69444325	510	37069										
CTSW	0	genome.wustl.edu	37	chr11	65650877	65650877	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atcctgaagaactcctggggGgcccaatggggagagaaggt	16	8	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	65650877	65650877	G	T	SNP	CTSW	ENST00000307886	human	ensembl	69_37n	1	known	silent	c.1002	p.G334	0.062	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543	63	0	0	107	15	12.3	-	-	-	T	65650877	G	T	65650877	2	4	341	1	0	0	0	0	0	0	0	1	4074	1219	43	4		4	CTSW	11	65650877	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	88686	65650877	69355639	511	37070										
RHOD	0	genome.wustl.edu	37	chr11	66838015	66838015	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgaagaaacggattggagccTgtgacctaccacagggtagg	14	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	66838015	66838015	T	C	SNP	RHOD	ENST00000308831	human	ensembl	69_37n	1	known	silent	c.450	p.P150	0.090	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOD	HGNC	ENSG00000173156	113	0	0	131	23	14.94	-	-	-	C	66838015	T	C	66838015	2	2	341	1	0	0	0	0	0	0	0	1	13421	1567	55	5		5	RHOD	11	66838015	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1187138	66838015	68168501	512	37071										
ADRBK1	0	genome.wustl.edu	37	chr11	67048216	67048216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttccagcgataagttcacaCggttttgccagtggaagaat	10	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	67048216	67048216	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	missense	c.517	p.R173W	0.995	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_GPCR_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	226	0	0	246	43	14.83	-	-	-	T	67048216	C	T	67048216	3	4	341	1	0	0	0	0	1	0	0	0	343	527	19	1	543	1	ADRBK1	11	67048216	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	210201	67048216	67958300	513	37072										
ANKRD13D	0	genome.wustl.edu	37	chr11	67057631	67057631	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaacctggagtctgtgagagTgctccttcgacacaatgcca	10	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	67057631	67057631	T	C	SNP	ANKRD13D	ENST00000511455	human	ensembl	69_37n	1	known	missense	c.173	p.V58A	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932	56	0	0	91	12	11.65	-	-	-	C	67057631	T	C	67057631	3	2	341	1	0	0	0	0	1	0	0	0	644	1696	59	5	179	5	ANKRD13D	11	67057631	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	9415	67057631	67948885	514	37073										
MTL5	0	genome.wustl.edu	37	chr11	68517942	68517942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggggttgaacgcgtgcaggaCgggttccttggggtccgccg	19	10	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	68517942	68517942	C	T	SNP	MTL5	ENST00000255087	human	ensembl	69_37n	-1	known	missense	c.187	p.V63I	0.220	NULL	pfam_TCR,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749	29	0	0	26	16	38.1	-	-	-	T	68517942	C	T	68517942	3	4	341	1	0	0	0	0	1	0	0	0	10008	536	19	1	1379	1	MTL5	11	68517942	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1460311	68517942	66488574	515	37074										
FCHSD2	0	genome.wustl.edu	37	chr11	72554333	72554333	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggtgggaaactgtaggtacTtttctggcacataacccact							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	72554333	72554333	T	-	DEL	FCHSD2	ENST00000409418	human	ensembl	69_37n	-1	known	frame_shift_del	c.1568	p.K523fs	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_FCH,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	FCHSD2	HGNC	ENSG00000137478	235	0	0	115	18	13.33	-	-	-	-	72554333	T	-	72554333	7	5	341	1	0	1	0	1	0	0	0	0	5836	1609	56	0	674	0	FCHSD2	11	72554333	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	4036391	72554333	62452183	516	37075										
PPME1	0	genome.wustl.edu	37	chr11	73914814	73914814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcccctgttccttggagtcAgtattttgagtccatggaag	10	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	73914814	73914814	A	G	SNP	PPME1	ENST00000328257	human	ensembl	69_37n	1	known	missense	c.143	p.Q48R	1.000	pirsf_PPase_methylesterase_euk	pirsf_PPase_methylesterase_euk	-	no_errors	PPME1	HGNC	ENSG00000214517	120	0	0	57	8	12.12	-	-	-	G	73914814	A	G	73914814	3	3	341	1	0	0	0	0	1	0	0	0	12424	188	7	5	149	5	PPME1	11	73914814	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1360481	73914814	61091702	517	37076										
LRRC32	0	genome.wustl.edu	37	chr11	76372195	76372195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagggtatgcaggctgggtgCctcccccagcagccgctcca	14	15	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	76372195	76372195	C	T	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	missense	c.442	p.A148T	0.998	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	144	0	0	177	22	10.78	-	-	-	T	76372195	C	T	76372195	3	4	341	1	0	0	0	0	1	0	0	0	9053	739	26	4	1550	4	LRRC32	11	76372195	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2457381	76372195	58634321	518	37077										
CEP57	0	genome.wustl.edu	37	chr11	95562350	95562351	+	Frame_Shift_Ins	INS	-	-	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacttctgctttgtatatagINStgatcaccagcagcttgcaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	95562350	95562351	-	C	INS	CEP57	ENST00000325542	human	ensembl	69_37n	1	known	frame_shift_ins	c.1129_1128	p.D378fs	1.000:1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	77	0	0	22	4	15.38	-	-	-	C	95562351	-	C	95562350	7	5	341	1	0	1	1	0	0	0	0	0	3285	1043	36	0	1165	0	CEP57	11	95562350	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	19190155	95562350	39444166	519	37078										
CNTN5	0	genome.wustl.edu	37	chr11	99827679	99827679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagctatatttgtctggtgaAaaacacagtgacgaatgcta	9	7	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	99827679	99827679	A	G	SNP	CNTN5	ENST00000279463	human	ensembl	69_37n	1	known	missense	c.815	p.K272R	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN5	HGNC	ENSG00000149972	92	0	0	7	4	36.36	-	-	-	G	99827679	A	G	99827679	3	3	341	1	0	0	0	0	1	0	0	0	3674	14	1	5	837	5	CNTN5	11	99827679	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4265329	99827679	35178837	520	37079										
MMP8	0	genome.wustl.edu	37	chr11	102584181	102584182	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttggtccactgaagacatggINSaagaaatctataaaaaaaga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	102584181	102584182	-	A	INS	MMP8	ENST00000236826	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1302_1301	p.H435fs	0.990:0.993	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP8	HGNC	ENSG00000118113	127	0	0	16	3	15.79	-	-	-	A	102584182	-	A	102584181	7	5	341	1	0	1	1	0	0	0	0	0	9740	1165	41	0	105	0	MMP8	11	102584181	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	2756502	102584181	32422335	521	37080										
EXPH5	0	genome.wustl.edu	37	chr11	108381248	108381248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatttcttcacatgctttccGttctcactcaacctgctttc	4	14	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	108381248	108381248	G	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	silent	c.4986	p.N1662	0.005	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	231	0	0	116	24	17.02	-	-	-	A	108381248	G	A	108381248	2	1	341	1	0	0	0	0	0	0	0	1	5359	1136	40	1		1	EXPH5	11	108381248	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5797067	108381248	26625268	522	37081										
PCSK7	0	genome.wustl.edu	37	chr11	117079626	117079626	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacatacgagtccatgctgcGgggggcgccgatgagggaca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	117079626	117079626	G	-	DEL	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	frame_shift_del	c.1678	p.R560fs	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	128	0	0	111	21	15.91	-	-	-	-	117079626	G	-	117079626	7	5	341	1	0	1	0	1	0	0	0	0	11678	1116	39	0	699	0	PCSK7	11	117079626	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	8698378	117079626	17926890	523	37082										
DSCAML1	0	genome.wustl.edu	37	chr11	117352731	117352731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttggtggcgatggcataccGcatgacgcggtcagggtcga	16	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	117352731	117352731	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.2686	p.R896W	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	372	0	0	357	71	16.47	-	-	-	A	117352731	G	A	117352731	3	1	341	1	0	0	0	0	1	0	0	0	4804	1086	38	1	3743	1	DSCAML1	11	117352731	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	273105	117352731	17653785	524	37083										
C2CD2L	0	genome.wustl.edu	37	chr11	118986850	118986850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacacgatgacctctccaacGcaacggccacgcccagtgtc	8	18	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	118986850	118986850	G	A	SNP	C2CD2L	ENST00000336702	human	ensembl	69_37n	1	known	missense	c.2008	p.A670T	0.927	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2L	HGNC	ENSG00000172375	130	0	0	115	18	13.53	-	-	-	A	118986850	G	A	118986850	3	1	341	1	0	0	0	0	1	0	0	0	2173	1087	38	1	2062	1	C2CD2L	11	118986850	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1634119	118986850	16019666	525	37084										
ARHGEF12	0	genome.wustl.edu	37	chr11	120352007	120352008	+	Frame_Shift_Del	DEL	GA	GA	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggctatgacccagtgcagGagagttccacagatgaggag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	120352007	120352008	GA	-	DEL	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	frame_shift_del	c.4219_4220	p.S1408fs	1.000:1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	106	0	0	27	3	10	-	-	-	-	120352008	GA	-	120352007	7	5	341	1	0	1	0	1	0	0	0	0	899	1175	41	0	4430	0	ARHGEF12	11	120352007	Frame_Shift_Del	DEL	GA	TCGA-AO-A128-01A-11D-A10M-09	1365157	120352007	14654509	526	37085										
TECTA	0	genome.wustl.edu	37	chr11	121039473	121039473	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctcctacaaacatccttaCcgccagggtgaagtagtgtt	9	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	121039473	121039473	C	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	nonsense	c.5838	p.Y1946*	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	361	0	0	112	15	11.81	-	-	-	A	121039473	C	A	121039473	4	1	341	1	0	0	0	0	0	1	0	0	15842	518	18	4	5912	4	TECTA	11	121039473	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	687466	121039473	13967043	527	37086										
OR8D1	0	genome.wustl.edu	37	chr11	124179975	124179976	+	Frame_Shift_Ins	INS	-	-	AT													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttggaccggccctctgaggaINSgcggatgtgaaggatgctgt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	124179975	124179976	-	AT	INS	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.688_687	p.S229fs	0.020:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	37	0	0	3	4	57.14	-	-	-	AT	124179976	-	AT	124179975	7	5	341	1	0	1	1	0	0	0	0	0	11304	304	11	0	241	0	OR8D1	11	124179975	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3140502	124179975	10826541	528	37087	304	3								
OR8D1	0	genome.wustl.edu	37	chr11	124179976	124179976	+	Silent	SNP	G	G	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttggaccggccctctgaggaGcggatgtgaaggatgctgta							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	124179976	124179976	G	A	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	silent	c.687	p.R229	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	38	0	0	5	4	44.44	-	-	-	A	124179976	G	A	124179976	2	1	341	1	0	0	0	0	0	0	0	1	11304	958	34	4		4	OR8D1	11	124179976	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1	124179976	10826540	529	37088	304	3								
OR8D1	0	genome.wustl.edu	37	chr11	124179977	124179977	+	Missense_Mutation	SNP	C	C	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggaccggccctctgaggagCggatgtgaaggatgctgtag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	124179977	124179977	C	A	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	missense	c.686	p.R229L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	38	0	0	5	4	44.44	-	-	-	A	124179977	C	A	124179977	3	1	341	1	0	0	0	0	1	0	0	0	11304	768	27	3	243	3	OR8D1	11	124179977	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1	124179977	10826539	530	37089	304	3								
OR8B12	0	genome.wustl.edu	37	chr11	124413044	124413044	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaatgattgacaaggttgtcAgcacagaaggtcaggttcat	11	6	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	124413044	124413044	A	G	SNP	OR8B12	ENST00000306842	human	ensembl	69_37n	-1	known	silent	c.507	p.A169	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B12	HGNC	ENSG00000170953	239	0	0	31	5	13.89	-	-	-	G	124413044	A	G	124413044	2	3	341	1	0	0	0	0	0	0	0	1	11299	175	7	5		5	OR8B12	11	124413044	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	233067	124413044	10593472	531	37090										
CDON	0	genome.wustl.edu	37	chr11	125875884	125875884	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttctgaaccatctctcttacTtctgtcatcattctgagcag	5	12	7	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	125875884	125875884	T	G	SNP	CDON	ENST00000392693	human	ensembl	69_37n	-1	known	missense	c.1621	p.S541R	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CDON	HGNC	ENSG00000064309	78	0	0	10	3	23.08	-	-	-	G	125875884	T	G	125875884	3	3	341	1	0	0	0	0	1	0	0	0	3199	1609	56	5	2221	5	CDON	11	125875884	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1462840	125875884	9130632	532	37091										
ARHGAP32	0	genome.wustl.edu	37	chr11	128936666	128936666	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtcagaacggggaagttctGagagctgggaaaatcttcgg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	11	128936666	128936666	G	-	DEL	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	frame_shift_del	c.587	p.S196fs	1.000	pfam_Phox,superfamily_Phox	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	84	0	0	15	2	11.76	-	-	-	-	128936666	G	-	128936666	7	5	341	1	0	1	0	1	0	0	0	0	883	1294	45	0	5744	0	ARHGAP32	11	128936666	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	3060782	128936666	6069850	533	37092										
DCP1B	0	genome.wustl.edu	37	chr12	2061735	2061735	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctgctcctgctgtacaatCtgaagcttcttcagtaactc	7	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	2061735	2061735	C	G	SNP	DCP1B	ENST00000280665	human	ensembl	69_37n	-1	known	missense	c.1371	p.Q457H	0.679	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065	150	0	0	62	25	28.74	-	-	-	G	2061735	C	G	2061735	3	3	341	1	0	0	0	0	1	0	0	0	4330	912	32	2	494	2	DCP1B	12	2061735	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		2061735	131790160	534	37093										
TULP3	0	genome.wustl.edu	37	chr12	3048601	3048601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctttgacagtaagctggcGtgtgaatgagagaacagtca	13	6	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	3048601	3048601	G	A	SNP	TULP3	ENST00000228245	human	ensembl	69_37n	1	known	silent	c.1320	p.A440	0.000	superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	294	0	0	138	20	12.66	-	-	-	A	3048601	G	A	3048601	2	1	341	1	0	0	0	0	0	0	0	1	16872	1132	40	1		1	TULP3	12	3048601	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	986866	3048601	130803294	535	37094										
PARP11	0	genome.wustl.edu	37	chr12	3931108	3931108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taattcggttgcgatccatcGtcttcccaaagagattagca	8	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	3931108	3931108	G	A	SNP	PARP11	ENST00000228820	human	ensembl	69_37n	-1	known	missense	c.479	p.T160M	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224	57	0	0	72	11	13.25	-	-	-	A	3931108	G	A	3931108	3	1	341	1	0	0	0	0	1	0	0	0	11529	1145	40	1	549	1	PARP11	12	3931108	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	882507	3931108	129920787	536	37095										
NDUFA9	0	genome.wustl.edu	37	chr12	4764073	4764073	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgtcccatgggtgacctgggCcagcttctgtttctggtaag	13	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	4764073	4764073	C	T	SNP	NDUFA9	ENST00000266544	human	ensembl	69_37n	1	known	silent	c.303	p.G101	0.971	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_NmrA	-	no_errors	NDUFA9	HGNC	ENSG00000139180	122	0	0	34	7	17.07	-	-	-	T	4764073	C	T	4764073	2	4	341	1	0	0	0	0	0	0	0	1	10344	726	26	4		4	NDUFA9	12	4764073	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	832965	4764073	129087822	537	37096										
CD9	0	genome.wustl.edu	37	chr12	6309663	6309663	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccaggctaagttagccctcAccatgccggtcaaaggaggc	11	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	6309663	6309663	A	G	SNP	CD9	ENST00000538834	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.772	-	-	-	no_errors	CD9	HGNC	ENSG00000010278	120	0	0	157	34	17.8	-	-	-	G	6309663	A	G	6309663	1	3	341	0	1	0	0	0	0	0	0	0	3075	174	6	5		5	CD9	12	6309663	RNA	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1545590	6309663	127542232	538	37097										
TAPBPL	0	genome.wustl.edu	37	chr12	6562312	6562312	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgaaggacggtgcgcaccgTggagctctcgccagcagtga	16	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	6562312	6562312	T	C	SNP	TAPBPL	ENST00000266556	human	ensembl	69_37n	1	known	silent	c.144	p.R48	0.000	NULL	pfam_Ig_C1-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	TAPBPL	HGNC	ENSG00000139192	103	1	0.94	94	13	12.04	-	-	-	C	6562312	T	C	6562312	2	2	341	1	0	0	0	0	0	0	0	1	15645	1683	59	5		5	TAPBPL	12	6562312	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	252649	6562312	127289583	539	37098										
MLF2	0	genome.wustl.edu	37	chr12	6858087	6858087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agccgccgaaactccaggggAcgctgctgccggaatcggga	15	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	6858087	6858087	A	G	SNP	MLF2	ENST00000537126	human	ensembl	69_37n	-1	putative	missense	c.653	p.V218A	0.812	NULL	pfam_Myeloid_leukemia_factor	-	no_stop_codon:bad_bp_length_for_coding_region	MLF2	HGNC	ENSG00000089693	21	0	0	23	5	17.24	-	-	-	G	6858087	A	G	6858087	3	3	341	1	0	0	0	0	1	0	0	0	9687	262	10	5	129	5	MLF2	12	6858087	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	295775	6858087	126993808	540	37099										
USP5	0	genome.wustl.edu	37	chr12	6972332	6972332	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcctccgggagctgctgagGtgacccttttcccacagatg	13	13	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	6972332	6972332	G	A	SNP	USP5	ENST00000541969	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	USP5	HGNC	ENSG00000111667	47	0	0	62	26	29.55	-	-	-	A	6972332	G	A	6972332	1	1	341	0	1	0	0	0	0	0	0	0	17178	1276	44	4		4	USP5	12	6972332	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	114245	6972332	126879563	541	37100										
A2M	0	genome.wustl.edu	37	chr12	9242994	9242994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccaggacacagtttgccgccCgtttgcacagatgcagtgag	12	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	9242994	9242994	C	T	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	missense	c.2554	p.G852R	0.010	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	238	0	0	128	21	14	-	-	-	T	9242994	C	T	9242994	3	4	341	1	0	0	0	0	1	0	0	0	4	652	23	1	1938	1	A2M	12	9242994	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2270662	9242994	124608901	542	37101										
LMO3	0	genome.wustl.edu	37	chr12	16753770	16753770	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccagcacaacctttcggctTggtgtctggctggactgaga	13	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	16753770	16753770	T	C	SNP	LMO3	ENST00000541295	human	ensembl	69_37n	-1	known	missense	c.79	p.K27E	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540	125	0	0	58	10	14.71	-	-	-	C	16753770	T	C	16753770	3	2	341	1	0	0	0	0	1	0	0	0	8909	1821	63	5	424	5	LMO3	12	16753770	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	7510776	16753770	117098125	543	37102										
PLEKHA5	0	genome.wustl.edu	37	chr12	19518974	19518974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atacaaagaacagtgttgacGaacaggaagaaactgttatt	9	5	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	19518974	19518974	G	A	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	missense	c.3376	p.E1126K	0.047	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	105	0	0	49	9	15.52	-	-	-	A	19518974	G	A	19518974	3	1	341	1	0	0	0	0	1	0	0	0	12133	1059	37	1	3599	1	PLEKHA5	12	19518974	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2765204	19518974	114332921	544	37103										
GYS2	0	genome.wustl.edu	37	chr12	21712043	21712043	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acctgagttgaaaagatggcTcttttcataattgttagatc	8	6	2	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	21712043	21712043	T	C	SNP	GYS2	ENST00000261195	human	ensembl	69_37n	-1	known	silent	c.1290	p.R430	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713	56	0	0	45	6	11.54	-	-	-	C	21712043	T	C	21712043	2	2	341	1	0	0	0	0	0	0	0	1	6964	1548	54	5		5	GYS2	12	21712043	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2193069	21712043	112139852	545	37104										
PPFIBP1	0	genome.wustl.edu	37	chr12	27840378	27840378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atctcagtatcaaaagggccAtccaggtcctgaggatcaat	9	10	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	27840378	27840378	A	G	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	missense	c.2326	p.I776V	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	291	0	0	57	13	18.57	-	-	-	G	27840378	A	G	27840378	3	3	341	1	0	0	0	0	1	0	0	0	12386	217	8	5	2440	5	PPFIBP1	12	27840378	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6128335	27840378	106011517	546	37105										
PRPF40B	0	genome.wustl.edu	37	chr12	50037096	50037096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctcagagtcaggctctgagCcctcttcctcacttgattca	7	15	6	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	50037096	50037096	C	T	SNP	PRPF40B	ENST00000380281	human	ensembl	69_37n	1	known	missense	c.2233	p.P745S	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	PRPF40B	HGNC	ENSG00000110844	87	0	0	60	22	26.83	-	-	-	T	50037096	C	T	50037096	3	4	341	1	0	0	0	0	1	0	0	0	12653	739	26	4	2319	4	PRPF40B	12	50037096	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	22196718	50037096	83814799	547	37106										
LIMA1	0	genome.wustl.edu	37	chr12	50571187	50571187	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccaggttgtttttcccacaTtcccattcttcttagaagcc	6	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	50571187	50571187	T	C	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.1943	p.N648S	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	222	0	0	152	20	11.63	-	-	-	C	50571187	T	C	50571187	3	2	341	1	0	0	0	0	1	0	0	0	8851	1493	52	5	343	5	LIMA1	12	50571187	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	534091	50571187	83280708	548	37107										
LETMD1	0	genome.wustl.edu	37	chr12	51442870	51442870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtgaagaacttgatgtcttAtgtggtaaccaagacaaaag	10	5	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	51442870	51442870	A	G	SNP	LETMD1	ENST00000262055	human	ensembl	69_37n	1	known	missense	c.176	p.Y59C	0.771	NULL	pfam_LETM1	-	no_errors	LETMD1	HGNC	ENSG00000050426	171	0	0	137	25	15.43	-	-	-	G	51442870	A	G	51442870	3	3	341	1	0	0	0	0	1	0	0	0	8790	449	16	5	182	5	LETMD1	12	51442870	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	871683	51442870	82409025	549	37108										
KRT81	0	genome.wustl.edu	37	chr12	52680929	52680929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcgcctgtaggtggcgatctCgatgtccaggcccagcttgg	15	12	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	52680929	52680929	C	T	SNP	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	missense	c.1204	p.E402K	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	144	0	0	187	33	14.93	-	-	-	T	52680929	C	T	52680929	3	4	341	1	0	0	0	0	1	0	0	0	8548	893	31	1	325	1	KRT81	12	52680929	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1238059	52680929	81170966	550	37109										
KRT71	0	genome.wustl.edu	37	chr12	52938505	52938505	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggaagccatagacactgccGccactggtgctgctgatgat	12	12	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	52938505	52938505	G	A	SNP	KRT71	ENST00000267119	human	ensembl	69_37n	-1	known	silent	c.1383	p.G461	0.160	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648	97	0	0	105	13	10.92	-	-	-	A	52938505	G	A	52938505	2	1	341	1	0	0	0	0	0	0	0	1	8537	1074	38	1		1	KRT71	12	52938505	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	257576	52938505	80913390	551	37110										
HOXC8	0	genome.wustl.edu	37	chr12	54403416	54403416	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caatatcccgactgtaaatcCtccgccaacactaacagtag	5	14	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	54403416	54403416	C	A	SNP	HOXC8	ENST00000040584	human	ensembl	69_37n	1	known	silent	c.348	p.S116	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	HOXC8	HGNC	ENSG00000037965	87	0	0	136	19	12.26	-	-	-	A	54403416	C	A	54403416	2	1	341	1	0	0	0	0	0	0	0	1	7367	668	24	4		4	HOXC8	12	54403416	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1464911	54403416	79448479	552	37111										
NFE2	0	genome.wustl.edu	37	chr12	54686225	54686225	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccatcggcagcctgttgcAgcgcgtactcttcaggagag	12	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	54686225	54686225	A	G	SNP	NFE2	ENST00000312156	human	ensembl	69_37n	-1	known	missense	c.1055	p.L352P	0.998	NULL	pfam_bZIP_1,pfam_bZIP_2,pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405	95	0	0	61	8	11.59	-	-	-	G	54686225	A	G	54686225	3	3	341	1	0	0	0	0	1	0	0	0	10438	188	7	5	70	5	NFE2	12	54686225	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	282809	54686225	79165670	553	37112										
DNAJC14	0	genome.wustl.edu	37	chr12	56221320	56221320	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcagagtcaagcaacgctGcaaggctggagaatccagcc	12	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	56221320	56221320	G	A	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	nonsense	c.1123	p.Q375*	0.783	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	53	0	0	99	12	10.81	-	-	-	A	56221320	G	A	56221320	4	1	341	1	0	0	0	0	0	1	0	0	4668	1328	46	4	1009	4	DNAJC14	12	56221320	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1535095	56221320	77630575	554	37113										
MARS	0	genome.wustl.edu	37	chr12	57883310	57883310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gactcacattgaccacagctTgagtcgtcagaactgtcctt	8	12	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	57883310	57883310	T	C	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.383	p.L128S	0.998	superfamily_Glutathione-S-Trfase_C-like	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	532	0	0	502	70	12.24	-	-	-	C	57883310	T	C	57883310	3	2	341	1	0	0	0	0	1	0	0	0	9387	1821	63	5	397	5	MARS	12	57883310	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1661990	57883310	75968585	555	37114										
C12orf56	0	genome.wustl.edu	37	chr12	64712708	64712708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggacagctttttgaggcctgGacgaggacagagagttgagt	16	6	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	64712708	64712708	G	T	SNP	C12orf56	ENST00000543942	human	ensembl	69_37n	-1	putative	missense	c.541	p.P181T	0.011	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	346	0	0	128	46	26.44	-	-	-	T	64712708	G	T	64712708	3	4	341	1	0	0	0	0	1	0	0	0	1712	1174	41	2	1367	2	C12orf56	12	64712708	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6829398	64712708	69139187	556	37115										
NAP1L1	0	genome.wustl.edu	37	chr12	76444310	76444312	+	Splice_Site	DEL	CAT	CAT	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaggattcaaattcgcttaCatcatcatcatcatcttcaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	76444310	76444312	CAT	-	DEL	NAP1L1	ENST00000261182	human	ensembl	69_37n	-1	known	splice_site_del	c.1059+3_1059+1	e12-1	1.000:1.000:1.000	-	-	-	no_errors	NAP1L1	HGNC	ENSG00000187109	54	0	0	12	2	14.29	-	-	-	-	76444312	CAT	-	76444310	8	5	341	1	0	1	0	1	0	0	1	0	10228	492	17	0	131	0	NAP1L1	12	76444310	Splice_Site	DEL	CAT	TCGA-AO-A128-01A-11D-A10M-09	11731602	76444310	57407585	557	37116										
CEP290	0	genome.wustl.edu	37	chr12	88510829	88510829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttgattgtgcttcactcAtatttttgaggctcaataaa	6	8	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	88510829	88510829	A	G	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.1811	p.M604T	0.822	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	106	0	0	148	19	11.38	-	-	-	G	88510829	A	G	88510829	3	3	341	1	0	0	0	0	1	0	0	0	3282	217	8	5	5782	5	CEP290	12	88510829	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	12066519	88510829	45341066	558	37117										
NEDD1	0	genome.wustl.edu	37	chr12	97328875	97328875	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ataccataactttgacagtgTacacaaagctccagcgtcag	7	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	97328875	97328875	T	C	SNP	NEDD1	ENST00000557644	human	ensembl	69_37n	1	known	missense	c.632	p.V211A	0.135	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NEDD1	HGNC	ENSG00000139350	285	1	0.35	33	18	35.29	-	-	-	C	97328875	T	C	97328875	3	2	341	1	0	0	0	0	1	0	0	0	10381	1638	57	5	654	5	NEDD1	12	97328875	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8818046	97328875	36523020	559	37118										
GNPTAB	0	genome.wustl.edu	37	chr12	102151044	102151044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccacatgagaaacgttggtaCgaatcattttaaaagcgatt	8	7	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	102151044	102151044	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.3380	p.R1127H	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	31	0	0	12	7	36.84	-	-	-	T	102151044	C	T	102151044	3	4	341	1	0	0	0	0	1	0	0	0	6597	536	19	1	406	1	GNPTAB	12	102151044	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4822169	102151044	31700851	560	37119										
SSH1	0	genome.wustl.edu	37	chr12	109185991	109185991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgtagtccctactacagagGctgaggtaggccaattagag	12	9	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	109185991	109185991	G	A	SNP	SSH1	ENST00000326470	human	ensembl	69_37n	-1	known	missense	c.1997	p.A666V	0.029	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	34	0	0	31	15	31.91	-	-	-	A	109185991	G	A	109185991	3	1	341	1	0	0	0	0	1	0	0	0	15275	1203	42	4	1379	4	SSH1	12	109185991	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7034947	109185991	24665904	561	37120										
ATXN2	0	genome.wustl.edu	37	chr12	111893834	111893834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggctaaagctggtattaccTgaggtacgtgggccatgtgg	15	7	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	111893834	111893834	T	C	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.3743	p.Q1248R	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	753	0	0	437	62	12.4	-	-	-	C	111893834	T	C	111893834	3	2	341	1	0	0	0	0	1	0	0	0	1215	1594	55	5	210	5	ATXN2	12	111893834	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2707843	111893834	21958061	562	37121										
TBX3	0	genome.wustl.edu	37	chr12	115109929	115109929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgagcagactgctgccgtccGggaccggcaccgggatggag	17	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	115109929	115109929	G	A	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.1949	p.P650L	0.772	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	19	0	0	40	14	25.93	-	-	-	A	115109929	G	A	115109929	3	1	341	1	0	0	0	0	1	0	0	0	15754	1116	39	1	286	1	TBX3	12	115109929	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3216095	115109929	18741966	563	37122										
SIRT4	0	genome.wustl.edu	37	chr12	120750862	120750862	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acagcctgatattccagaacCtggaacagggactttcactt	8	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	120750862	120750862	C	A	SNP	SIRT4	ENST00000537892	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIRT4	HGNC	ENSG00000089163	131	0	0	90	50	35.71	-	-	-	A	120750862	C	A	120750862	1	1	341	0	1	0	0	0	0	0	0	0	14429	696	24	4		4	SIRT4	12	120750862	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5640933	120750862	13101033	564	37123										
DDX55	0	genome.wustl.edu	37	chr12	124103306	124103306	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggctgacagagctgtgtttGaaaagggcatgaaagctttt	13	5	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	124103306	124103306	G	C	SNP	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	missense	c.1255	p.E419Q	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	297	0	0	136	46	25.14	-	-	-	C	124103306	G	C	124103306	3	2	341	1	0	0	0	0	1	0	0	0	4404	1291	45	2	1301	2	DDX55	12	124103306	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3352444	124103306	9748589	565	37124										
DNAH10	0	genome.wustl.edu	37	chr12	124416307	124416307	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgcctcggaacaggactctcCcccacttcggtggtgctcct	10	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	124416307	124416307	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.12687	p.S4229	0.568	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	101	0	0	81	39	32.5	-	-	-	T	124416307	C	T	124416307	2	4	341	1	0	0	0	0	0	0	0	1	4634	610	22	4		4	DNAH10	12	124416307	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	313001	124416307	9435588	566	37125										
NCOR2	0	genome.wustl.edu	37	chr12	124887087	124887087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctgctgctgctgctgctgCtgctgctgttgttgctgctg	14	11	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	124887087	124887087	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	silent	c.1503	p.Q501	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	117	0	0	132	62	31.79	-	-	-	T	124887087	C	T	124887087	2	4	341	1	0	0	0	0	0	0	0	1	10308	796	28	4		4	NCOR2	12	124887087	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	470780	124887087	8964808	567	37126										
ULK1	0	genome.wustl.edu	37	chr12	132393760	132393760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caccatcgtctaccagtgccTgacggggaaggcgcccttcc	11	16	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	132393760	132393760	T	C	SNP	ULK1	ENST00000321867	human	ensembl	69_37n	1	known	missense	c.644	p.L215P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	66	0	0	117	18	13.24	-	-	-	C	132393760	T	C	132393760	3	2	341	1	0	0	0	0	1	0	0	0	17072	1580	55	5	674	5	ULK1	12	132393760	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	7506673	132393760	1458135	568	37127										
GOLGA3	0	genome.wustl.edu	37	chr12	133349838	133349838	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagactcgtgcaccgtcagGgcgtgctcctccatctggcg	13	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	12	133349838	133349838	G	T	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	silent	c.4350	p.A1450	0.888	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	48	0	0	82	27	24.77	-	-	-	T	133349838	G	T	133349838	2	4	341	1	0	0	0	0	0	0	0	1	6606	1219	43	4		4	GOLGA3	12	133349838	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	956078	133349838	502057	569	37128										
ZMYM2	0	genome.wustl.edu	37	chr13	20580593	20580593	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taatagatatagaatggccaAtggtttaataatgaattgct	8	3	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	20580593	20580593	A	G	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.1379	p.N460S	1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	169	0	0	33	5	13.16	-	-	-	G	20580593	A	G	20580593	3	3	341	1	0	0	0	0	1	0	0	0	17796	101	4	5	1393	5	ZMYM2	13	20580593	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09		20580593	94589285	570	37129										
SACS	0	genome.wustl.edu	37	chr13	23913916	23913916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctggaatctgattgctatAcagccatctgataatattca	7	8	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	23913916	23913916	A	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.4099	p.Y1367H	0.877	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	355	0	0	84	18	17.65	-	-	-	G	23913916	A	G	23913916	3	3	341	1	0	0	0	0	1	0	0	0	13890	391	14	5	9644	5	SACS	13	23913916	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3333323	23913916	91255962	571	37130										
PABPC3	0	genome.wustl.edu	37	chr13	25671457	25671457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctcagcgcaaagaagagcGccaggcttacctcactaacg	10	13	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	25671457	25671457	G	A	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	missense	c.1121	p.R374H	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	550	1	0.18	640	112	14.85	-	-	-	A	25671457	G	A	25671457	3	1	341	1	0	0	0	0	1	0	0	0	11438	1087	38	1	1123	1	PABPC3	13	25671457	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1757541	25671457	89498421	572	37131										
FAM123A	0	genome.wustl.edu	37	chr13	25744017	25744017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacgggctttaaccgggacaGggaggacgtctcctcgttgt	14	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	25744017	25744017	G	T	SNP	FAM123A	ENST00000515384	human	ensembl	69_37n	-1	known	missense	c.1741	p.L581M	0.001	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123A	HGNC	ENSG00000165566	232	0	0	325	52	13.72	-	-	-	T	25744017	G	T	25744017	3	4	341	1	0	0	0	0	1	0	0	0	5462	991	35	4	278	4	FAM123A	13	25744017	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	72560	25744017	89425861	573	37132										
FLT1	0	genome.wustl.edu	37	chr13	28877392	28877392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctttccagctcagcgtggTcgtaggtgaacctgcgcttg	12	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	28877392	28877392	T	C	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.3929	p.D1310G	0.036	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	85	0	0	34	10	22.73	-	-	-	C	28877392	T	C	28877392	3	2	341	1	0	0	0	0	1	0	0	0	5987	1667	58	5	91	5	FLT1	13	28877392	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3133375	28877392	86292486	574	37133										
FRY	0	genome.wustl.edu	37	chr13	32835905	32835905	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaggactccgatgaatcatcCgaggaggaggacctcacagc	13	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	32835905	32835905	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	silent	c.7569	p.S2523	0.001	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	70	0	0	24	4	14.29	-	-	-	T	32835905	C	T	32835905	2	4	341	1	0	0	0	0	0	0	0	1	6112	639	23	1		1	FRY	13	32835905	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3958513	32835905	82333973	575	37134										
NBEA	0	genome.wustl.edu	37	chr13	36239286	36239286	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagttgtctgtgtttctgtCtgtgcagaacttgggcttgt	13	6	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	36239286	36239286	C	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	silent	c.8364	p.V2788	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	283	0	0	152	26	14.53	-	-	-	T	36239286	C	T	36239286	2	4	341	1	0	0	0	0	0	0	0	1	10259	900	32	2		2	NBEA	13	36239286	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3403381	36239286	78930592	576	37135										
KBTBD6	0	genome.wustl.edu	37	chr13	41704757	41704757	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggtatttcttcttcttcagTgaggaaactctgaccaggtt	9	8	5	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	41704757	41704757	T	C	SNP	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	missense	c.1891	p.T631A	0.979	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	245	0	0	272	34	11.11	-	-	-	C	41704757	T	C	41704757	3	2	341	1	0	0	0	0	1	0	0	0	8051	1696	59	5	137	5	KBTBD6	13	41704757	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5465471	41704757	73465121	577	37136										
HTR2A	0	genome.wustl.edu	37	chr13	47466654	47466654	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcgcagaggtgcatgatggAggccgtggagaagagcacgt	19	7	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	47466654	47466654	A	G	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	missense	c.484	p.S162P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	267	0	0	250	38	13.19	-	-	-	G	47466654	A	G	47466654	3	3	341	1	0	0	0	0	1	0	0	0	7495	304	11	5	939	5	HTR2A	13	47466654	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5761897	47466654	67703224	578	37137										
LECT1	0	genome.wustl.edu	37	chr13	53282808	53282808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtagttggaacaatttttcTtaccacttctcttctttccc	5	11	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	53282808	53282808	T	C	SNP	LECT1	ENST00000377962	human	ensembl	69_37n	-1	known	missense	c.652	p.R218G	0.990	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110	108	0	0	64	8	11.11	-	-	-	C	53282808	T	C	53282808	3	2	341	1	0	0	0	0	1	0	0	0	8766	1617	56	5	360	5	LECT1	13	53282808	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5816154	53282808	61887070	579	37138										
TM9SF2	0	genome.wustl.edu	37	chr13	100193853	100193853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgttctcttcttatctggaAtggtagctatgattatgtta	8	5	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	100193853	100193853	A	G	SNP	TM9SF2	ENST00000376387	human	ensembl	69_37n	1	known	missense	c.949	p.M317V	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304	411	0	0	107	14	11.57	-	-	-	G	100193853	A	G	100193853	3	3	341	1	0	0	0	0	1	0	0	0	16073	101	4	5	983	5	TM9SF2	13	100193853	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	46911045	100193853	14976025	580	37139										
ARHGEF7	0	genome.wustl.edu	37	chr13	111927123	111927123	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcaaaaatccatggctgccTtcaaaaacctttcagtaagt	5	10	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	111927123	111927123	T	C	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	missense	c.1321	p.F441L	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	150	0	0	132	22	14.1	-	-	-	C	111927123	T	C	111927123	3	2	341	1	0	0	0	0	1	0	0	0	913	1609	56	5	1367	5	ARHGEF7	13	111927123	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	11733270	111927123	3242755	581	37140										
F10	0	genome.wustl.edu	37	chr13	113803484	113803484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccacgagaagggccggcagTccaccaggctcaagatgctg	13	14	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	13	113803484	113803484	T	C	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	missense	c.1120	p.S374P	0.504	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	36	0	0	62	13	17.33	-	-	-	C	113803484	T	C	113803484	3	2	341	1	0	0	0	0	1	0	0	0	5373	1667	58	5	1150	5	F10	13	113803484	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1876361	113803484	1366394	582	37141										
SALL2	0	genome.wustl.edu	37	chr14	21993615	21993615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggattattgtgaccctcagGccggggttcagaggaggccg	16	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	21993615	21993615	G	C	SNP	SALL2	ENST00000327430	human	ensembl	69_37n	-1	known	missense	c.247	p.P83A	0.881	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	105	0	0	177	29	14.08	-	-	-	C	21993615	G	C	21993615	3	2	341	1	0	0	0	0	1	0	0	0	13897	1203	42	4	2780	4	SALL2	14	21993615	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		21993615	85355925	583	37142										
ACIN1	0	genome.wustl.edu	37	chr14	23533631	23533631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggctgtgctggctccccagCgtcgtttccgaccaggctgg	14	14	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	23533631	23533631	C	T	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.2549	p.R850H	1.000	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	469	0	0	484	84	14.79	-	-	-	T	23533631	C	T	23533631	3	4	341	1	0	0	0	0	1	0	0	0	142	768	27	1	1512	1	ACIN1	14	23533631	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1540016	23533631	83815909	584	37143										
CEBPE	0	genome.wustl.edu	37	chr14	23586796	23586796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgggtgagctgctccacgCggctgcggaggcgctcgttc	16	14	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	23586796	23586796	C	T	SNP	CEBPE	ENST00000206513	human	ensembl	69_37n	-1	known	missense	c.746	p.R249H	1.000	pfam_bZIP_2,pfam_bZIP_1,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	pfam_bZIP_2,pfam_bZIP_1,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	-	no_errors	CEBPE	HGNC	ENSG00000092067	118	0	0	152	29	15.93	-	-	-	T	23586796	C	T	23586796	3	4	341	1	0	0	0	0	1	0	0	0	3231	768	27	1	103	1	CEBPE	14	23586796	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	53165	23586796	83762744	585	37144										
MYH6	0	genome.wustl.edu	37	chr14	23853881	23853881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttcatgcgctccaggtgggCgctggtgtcctgctccttct	12	14	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	23853881	23853881	C	T	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.5335	p.A1779T	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	268	0	0	276	181	39.35	-	-	-	T	23853881	C	T	23853881	3	4	341	1	0	0	0	0	1	0	0	0	10110	768	27	1	500	1	MYH6	14	23853881	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	267085	23853881	83495659	586	37145										
DCAF11	0	genome.wustl.edu	37	chr14	24587674	24587674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcaaggcccgcgacgtaggcTggagcgtcttggatgtggcc	16	11	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	24587674	24587674	T	C	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.655	p.W219R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	218	0	0	199	38	16.03	-	-	-	C	24587674	T	C	24587674	3	2	341	1	0	0	0	0	1	0	0	0	4294	1580	55	5	677	5	DCAF11	14	24587674	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	733793	24587674	82761866	587	37146										
FITM1	0	genome.wustl.edu	37	chr14	24601441	24601441	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaatttgtgaattcagcctgGggctggacatgcactttctt	10	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	24601441	24601441	G	T	SNP	FITM1	ENST00000267426	human	ensembl	69_37n	1	known	missense	c.288	p.W96C	1.000	pfam_FIT	pfam_FIT	-	no_errors	FITM1	HGNC	ENSG00000139914	125	0	0	197	25	11.26	-	-	-	T	24601441	G	T	24601441	3	4	341	1	0	0	0	0	1	0	0	0	5944	1241	43	4	294	4	FITM1	14	24601441	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	13767	24601441	82748099	588	37147										
REC8	0	genome.wustl.edu	37	chr14	24648665	24648665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctcatcccaccagaagaaCggtggtaagcggccaggctc	12	14	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	24648665	24648665	C	T	SNP	REC8	ENST00000311457	human	ensembl	69_37n	1	known	missense	c.1312	p.R438W	0.997	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	56	0	0	52	31	37.35	-	-	-	T	24648665	C	T	24648665	3	4	341	1	0	0	0	0	1	0	0	0	13282	527	19	1	1374	1	REC8	14	24648665	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	47224	24648665	82700875	589	37148										
REC8	0	genome.wustl.edu	37	chr14	24649135	24649135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagtgtatgcatgtgtgtgtGtgtatgtggggcagggacac	18	4	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	24649135	24649135	G	A	SNP	REC8	ENST00000559797	human	ensembl	69_37n	1	known	missense	c.682	p.V228M	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	REC8	HGNC	ENSG00000100918	75	0	0	85	15	15	-	-	-	A	24649135	G	A	24649135	3	1	341	1	0	0	0	0	1	0	0	0	13282	1392	48	4		4	REC8	14	24649135	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	470	24649135	82700405	590	37149										
TGM1	0	genome.wustl.edu	37	chr14	24724650	24724650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgacaatgagtgtgccgatgGccttctcctccacataaaca	8	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	24724650	24724650	G	A	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.1565	p.A522V	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	385	0	0	263	97	26.87	-	-	-	A	24724650	G	A	24724650	3	1	341	1	0	0	0	0	1	0	0	0	15924	1203	42	4	908	4	TGM1	14	24724650	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	75515	24724650	82624890	591	37150										
ARHGAP5	0	genome.wustl.edu	37	chr14	32586415	32586415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaagtaattactttgggatgCccctccaggatctggttaca	9	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	32586415	32586415	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.3787	p.P1263S	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	48	0	0	52	17	24.64	-	-	-	T	32586415	C	T	32586415	3	4	341	1	0	0	0	0	1	0	0	0	888	739	26	4	3793	4	ARHGAP5	14	32586415	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7861765	32586415	74763125	592	37151										
NID2	0	genome.wustl.edu	37	chr14	52509645	52509645	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgttggcagcattatacgtGaagactgaaaaataaaacaa	8	5	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	52509645	52509645	G	A	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	silent	c.1434	p.F478	0.849	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	192	0	0	40	8	16.67	-	-	-	A	52509645	G	A	52509645	2	1	341	1	0	0	0	0	0	0	0	1	10487	1281	45	2		2	NID2	14	52509645	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	19923230	52509645	54839895	593	37152										
SAMD4A	0	genome.wustl.edu	37	chr14	55203892	55203892	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgcctcccatccgatcatgCccccctgtctccacaaagca							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	55203892	55203892	C	-	DEL	SAMD4A	ENST00000392067	human	ensembl	69_37n	1	known	frame_shift_del	c.866	p.L291fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	339	0	0	52	10	16.13	-	-	-	-	55203892	C	-	55203892	7	5	341	1	0	1	0	1	0	0	0	0	13907	739	26	0	873	0	SAMD4A	14	55203892	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	2694247	55203892	52145648	594	37153										
TIMM9	0	genome.wustl.edu	37	chr14	58875846	58875846	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcatggatattctttgtgtcAtttttaaatatttctgtaag	6	4	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	58875846	58875846	A	G	SNP	TIMM9	ENST00000395159	human	ensembl	69_37n	-1	known	missense	c.176	p.M59T	1.000	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM9	HGNC	ENSG00000100575	96	0	0	62	19	23.46	-	-	-	G	58875846	A	G	58875846	3	3	341	1	0	0	0	0	1	0	0	0	16011	217	8	5	97	5	TIMM9	14	58875846	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3671954	58875846	48473694	595	37154										
SIX6	0	genome.wustl.edu	37	chr14	60977825	60977825	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccagcagcaggtcctgtcacAgggttccgggcgggcactac	14	14	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	60977825	60977825	A	C	SNP	SIX6	ENST00000327720	human	ensembl	69_37n	1	known	missense	c.596	p.Q199P	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX6	HGNC	ENSG00000184302	16	0	0	15	4	21.05	-	-	-	C	60977825	A	C	60977825	3	2	341	1	0	0	0	0	1	0	0	0	14440	188	7	5	602	5	SIX6	14	60977825	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2101979	60977825	46371715	596	37155										
RBM25	0	genome.wustl.edu	37	chr14	73569925	73569926	+	Frame_Shift_Ins	INS	-	-	CG													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagaagagaaaggcaaaaaINSggaaaaagaaagacaggaaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	73569925	73569926	-	CG	INS	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	frame_shift_ins	c.893_894	p.K298fs	1.000:1.000	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	103	0	0	58	11	15.94	-	-	-	CG	73569926	-	CG	73569925	7	5	341	1	0	1	1	0	0	0	0	0	13208	72	3	0	927	0	RBM25	14	73569925	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	12592100	73569925	33779615	597	37156										
PGF	0	genome.wustl.edu	37	chr14	75416089	75416089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacattggccgtctccaccgGcacacagtgcagattctcat	9	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	75416089	75416089	G	A	SNP	PGF	ENST00000405431	human	ensembl	69_37n	-1	known	missense	c.286	p.P96S	1.000	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PGF	HGNC	ENSG00000119630	88	0	0	100	17	14.53	-	-	-	A	75416089	G	A	75416089	3	1	341	1	0	0	0	0	1	0	0	0	11862	1203	42	4	246	4	PGF	14	75416089	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1846164	75416089	31933451	598	37157										
STON2	0	genome.wustl.edu	37	chr14	81737004	81737004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagcattagccagatgcttcCcaaggctacctggtagctgt	10	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	81737004	81737004	C	T	SNP	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	missense	c.2623	p.G875R	0.000	pirsf_Stonin	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	236	0	0	167	31	15.66	-	-	-	T	81737004	C	T	81737004	3	4	341	1	0	0	0	0	1	0	0	0	15409	632	22	4	96	4	STON2	14	81737004	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6320915	81737004	25612536	599	37158										
SEL1L	0	genome.wustl.edu	37	chr14	81964780	81964780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gattggcaacaagacgatagTgagtcagggcagattcacaa	12	7	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	81964780	81964780	T	C	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	missense	c.950	p.H317R	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537	169	0	0	58	7	10.77	-	-	-	C	81964780	T	C	81964780	3	2	341	1	0	0	0	0	1	0	0	0	14098	1696	59	5	1486	5	SEL1L	14	81964780	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	227776	81964780	25384760	600	37159										
TTC7B	0	genome.wustl.edu	37	chr14	91247102	91247102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttggtagcgtaggcttctGcgatcacccgcagcctgtag	12	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	91247102	91247102	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.425	p.A142V	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	115	0	0	72	25	25.25	-	-	-	A	91247102	G	A	91247102	3	1	341	1	0	0	0	0	1	0	0	0	16810	1319	46	4	2178	4	TTC7B	14	91247102	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9282322	91247102	16102438	601	37160										
GPR68	0	genome.wustl.edu	37	chr14	91701374	91701374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtacagctcatcgaggagttGtctgcagtgatgttccccat	11	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	91701374	91701374	G	A	SNP	GPR68	ENST00000238699	human	ensembl	69_37n	-1	known	silent	c.51	p.D17	0.991	prints_OGR1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_OGR1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Psych_rcpt	-	no_errors	GPR68	HGNC	ENSG00000119714	252	0	0	265	42	13.55	-	-	-	A	91701374	G	A	91701374	2	1	341	1	0	0	0	0	0	0	0	1	6757	1368	48	4		4	GPR68	14	91701374	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	454272	91701374	15648166	602	37161										
ATXN3	0	genome.wustl.edu	37	chr14	92548745	92548745	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccctctgcaaatcctcctcaTcttcgtctaacattcctgag	4	16	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	92548745	92548745	T	G	SNP	ATXN3	ENST00000545170	human	ensembl	69_37n	-1	known	missense	c.674	p.D225A	1.000	pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427	219	0	0	82	29	26.13	-	-	-	G	92548745	T	G	92548745	3	3	341	1	0	0	0	0	1	0	0	0	1217	1435	50	5	427	5	ATXN3	14	92548745	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	847371	92548745	14800795	603	37162										
DDX24	0	genome.wustl.edu	37	chr14	94526827	94526827	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagcctgatgcaccagggtGagtgtggcagaaaaaacaag	15	7	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	94526827	94526827	G	A	SNP	DDX24	ENST00000330836	human	ensembl	69_37n	-1	known	silent	c.1530	p.L510	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737	273	0	0	87	14	13.86	-	-	-	A	94526827	G	A	94526827	2	1	341	1	0	0	0	0	0	0	0	1	4382	1277	45	2		2	DDX24	14	94526827	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1978082	94526827	12822713	604	37163										
RTL1	0	genome.wustl.edu	37	chr14	101350748	101350748	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctcgggctcccgatgggttGactgatgcttctttcatcct	10	12	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	101350748	101350748	G	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	silent	c.378	p.V126	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	132	0	0	192	27	12.33	-	-	-	A	101350748	G	A	101350748	2	1	341	1	0	0	0	0	0	0	0	1	13810	1277	45	2		2	RTL1	14	101350748	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6823921	101350748	5998792	605	37164										
DYNC1H1	0	genome.wustl.edu	37	chr14	102508438	102508438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccttgcagccgagcagaacaCgcagatcacttcaattgcaa	8	13	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	102508438	102508438	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.12191	p.T4064M	0.979	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	349	0	0	255	106	29.36	-	-	-	T	102508438	C	T	102508438	3	4	341	1	0	0	0	0	1	0	0	0	4876	536	19	1	12453	1	DYNC1H1	14	102508438	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1157690	102508438	4841102	606	37165										
KLC1	0	genome.wustl.edu	37	chr14	104136570	104136570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttatggtaaaagagggaagTacaaagaagcagagccgttg	13	4	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	104136570	104136570	T	C	SNP	KLC1	ENST00000334553	human	ensembl	69_37n	1	known	missense	c.937	p.Y313H	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	132	0	0	151	31	17.03	-	-	-	C	104136570	T	C	104136570	3	2	341	1	0	0	0	0	1	0	0	0	8386	1638	57	5	959	5	KLC1	14	104136570	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1628132	104136570	3212970	607	37166										
ASPG	0	genome.wustl.edu	37	chr14	104571759	104571759	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacgctgggcggtggggtctCctggctcctcagtctgagcg	16	13	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	104571759	104571759	C	A	SNP	ASPG	ENST00000455920	human	ensembl	69_37n	1	known	missense	c.1145	p.S382Y	0.014	superfamily_Ankyrin_rpt-contain_dom	pfam_Asparaginase/glutaminase,pfam_Ankyrin_rpt,superfamily_Asparaginase/glutaminase,superfamily_Ankyrin_rpt-contain_dom,smart_Asparaginase/glutaminase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Asparaginase/glutaminase,prints_Ankyrin_rpt,tigrfam_AsnASEI	-	no_errors	ASPG	HGNC	ENSG00000166183	115	0	0	126	26	16.99	-	-	-	A	104571759	C	A	104571759	3	1	341	1	0	0	0	0	1	0	0	0	1056	855	30	2	1183	2	ASPG	14	104571759	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	435189	104571759	2777781	608	37167										
KIF26A	0	genome.wustl.edu	37	chr14	104638170	104638170	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caggtgatcctctacgatccCgccgccggtcccccaggcag	11	18	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	104638170	104638170	C	T	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	silent	c.1224	p.P408	0.002	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	28	0	0	25	18	41.86	-	-	-	T	104638170	C	T	104638170	2	4	341	1	0	0	0	0	0	0	0	1	8346	639	23	1		1	KIF26A	14	104638170	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	66411	104638170	2711370	609	37168										
INF2	0	genome.wustl.edu	37	chr14	105180655	105180655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggctgggaccttgtagacgcCgtgacccccggccctcagcc	13	17	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	105180655	105180655	C	T	SNP	INF2	ENST00000392634	human	ensembl	69_37n	1	known	silent	c.3156	p.A1052	0.003	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_WH2_dom,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	55	0	0	73	35	32.11	-	-	-	T	105180655	C	T	105180655	2	4	341	1	0	0	0	0	0	0	0	1	7788	639	23	1		1	INF2	14	105180655	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	542485	105180655	2168885	610	37169										
NUDT14	0	genome.wustl.edu	37	chr14	105643085	105643085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagggaccctgggaagcggcGctccacctcacccgcataca	11	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	14	105643085	105643085	G	A	SNP	NUDT14	ENST00000392568	human	ensembl	69_37n	-1	known	missense	c.214	p.R72C	0.025	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	-	no_errors	NUDT14	HGNC	ENSG00000183828	22	0	0	29	13	30.95	-	-	-	A	105643085	G	A	105643085	3	1	341	1	0	0	0	0	1	0	0	0	10803	1087	38	1	462	1	NUDT14	14	105643085	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	462430	105643085	1706455	611	37170										
TUBGCP5	0	genome.wustl.edu	37	chr15	22863085	22863085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacaagcagtatctagattgCtgtggaaatctcatgcaaac	9	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	22863085	22863085	C	T	SNP	TUBGCP5	ENST00000283645	human	ensembl	69_37n	1	known	silent	c.2106	p.C702	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP5	HGNC	ENSG00000153575	140	0	0	72	34	31.48	-	-	-	T	22863085	C	T	22863085	2	4	341	1	0	0	0	0	0	0	0	1	16866	805	28	4		4	TUBGCP5	15	22863085	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		22863085	79668307	612	37171										
ATP10A	0	genome.wustl.edu	37	chr15	25959294	25959294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcggccaggctcccgatgCtgctgcagcctgaggtcagg	16	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	25959294	25959294	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1871	p.S624N	1.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	55	0	0	55	12	17.91	-	-	-	T	25959294	C	T	25959294	3	4	341	1	0	0	0	0	1	0	0	0	1120	797	28	4	2676	4	ATP10A	15	25959294	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3096209	25959294	76572098	613	37172										
AQR	0	genome.wustl.edu	37	chr15	35167030	35167030	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgatgatcgccaatcataatCcatcgttttagtcggctaaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	35167030	35167030	C	-	DEL	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	frame_shift_del	c.3273	p.W1091fs	1.000	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	145	0	0	13	2	13.33	-	-	-	-	35167030	C	-	35167030	7	5	341	1	0	1	0	1	0	0	0	0	837	856	30	0	1212	0	AQR	15	35167030	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	9207736	35167030	67364362	614	37173										
EIF2AK4	0	genome.wustl.edu	37	chr15	40318192	40318192	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttaaggttaagtctttcgaGaaggaaaggcagacagagaa	12	4	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	40318192	40318192	G	A	SNP	EIF2AK4	ENST00000560855	human	ensembl	69_37n	1	known	missense	c.3736	p.E1246K	1.000	superfamily_Anticodon-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Anticodon-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EIF2AK4	HGNC	ENSG00000128829	196	0	0	85	11	11.46	-	-	-	A	40318192	G	A	40318192	3	1	341	1	0	0	0	0	1	0	0	0	5034	933	33	2	4534	2	EIF2AK4	15	40318192	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5151162	40318192	62213200	615	37174										
BMF	0	genome.wustl.edu	37	chr15	40398245	40398245	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctccccatcctctggttggaAcacatcatcctccagctcct	5	18	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	40398245	40398245	A	G	SNP	BMF	ENST00000354670	human	ensembl	69_37n	-1	known	missense	c.43	p.F15L	1.000	NULL	NULL	-	no_errors	BMF	HGNC	ENSG00000104081	142	0	0	193	61	23.92	-	-	-	G	40398245	A	G	40398245	3	3	341	1	0	0	0	0	1	0	0	0	1459	43	2	5	523	5	BMF	15	40398245	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	80053	40398245	62133147	616	37175										
FAM82A2	0	genome.wustl.edu	37	chr15	41043661	41043661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atctgtgaacgtggctcccgAggaggccgtgaagtagacag	15	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	41043661	41043661	A	C	SNP	FAM82A2	ENST00000260385	human	ensembl	69_37n	-1	known	missense	c.487	p.S163A	0.998	NULL	NULL	-	no_errors	FAM82A2	HGNC	ENSG00000137824	64	0	0	55	12	17.91	-	-	-	C	41043661	A	C	41043661	3	2	341	1	0	0	0	0	1	0	0	0	5676	304	11	5	965	5	FAM82A2	15	41043661	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	645416	41043661	61487731	617	37176										
DMXL2	0	genome.wustl.edu	37	chr15	51790768	51790768	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgagcaactcttatctctGctttcatcaagctcagtact							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	51790768	51790768	G	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	frame_shift_del	c.4653	p.S1551fs	0.995	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	103	0	0	19	3	13.64	-	-	-	-	51790768	G	-	51790768	7	5	341	1	0	1	0	1	0	0	0	0	4631	1310	46	0	4564	0	DMXL2	15	51790768	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	10747107	51790768	50740624	618	37177	305	2								
DMXL2	0	genome.wustl.edu	37	chr15	51790773	51790774	+	Frame_Shift_Del	DEL	CA	CA	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaactcttatctctgctttCatcaagctcagtactagtag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	51790773	51790774	CA	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	frame_shift_del	c.4648_4647	p.D1549fs	1.000:1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	112	0	0	22	3	12	-	-	-	-	51790774	CA	-	51790773	7	5	341	1	0	1	0	1	0	0	0	0	4631	835	29	0	4569	0	DMXL2	15	51790773	Frame_Shift_Del	DEL	CA	TCGA-AO-A128-01A-11D-A10M-09	5	51790773	50740619	619	37178	305	2								
GNB5	0	genome.wustl.edu	37	chr15	52446168	52446168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcacgatcctcctcttatctTtgcaccagtccatgcacagg	6	15	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	52446168	52446168	T	C	SNP	GNB5	ENST00000261837	human	ensembl	69_37n	-1	known	missense	c.344	p.K115R	0.879	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB5	HGNC	ENSG00000069966	324	0	0	125	23	15.54	-	-	-	C	52446168	T	C	52446168	3	2	341	1	0	0	0	0	1	0	0	0	6573	1841	64	5	883	5	GNB5	15	52446168	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	655395	52446168	50085224	620	37179										
WDR72	0	genome.wustl.edu	37	chr15	54015098	54015099	+	Frame_Shift_Ins	INS	-	-	AATT													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accaaataggagttctttcgINSctgaaatctgaaaataatga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	54015098	54015099	-	AATT	INS	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.161_160	p.A54fs	0.998:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	95	0	0	14	2	12.5	-	-	-	AATT	54015099	-	AATT	54015098	7	5	341	1	0	1	1	0	0	0	0	0	17419	1087	38	0	3219	0	WDR72	15	54015098	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1568930	54015098	48516294	621	37180										
PRTG	0	genome.wustl.edu	37	chr15	55974695	55974696	+	Frame_Shift_Ins	INS	-	-	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgttggtagggcagttatcINSctgttatgagagaaagataa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	55974695	55974696	-	T	INS	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	frame_shift_ins	c.543_544	p.I183fs	1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	139	0	0	16	3	15.79	-	-	-	T	55974696	-	T	55974695	7	5	341	1	0	1	1	0	0	0	0	0	12718	869	30	0	2977	0	PRTG	15	55974695	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	1959597	55974695	46556697	622	37181										
MYO1E	0	genome.wustl.edu	37	chr15	59502732	59502732	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccactttgttctctatgaggTcacatacgattttattatta	5	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	59502732	59502732	T	C	SNP	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	missense	c.1343	p.D448G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	236	0	0	205	29	12.39	-	-	-	C	59502732	T	C	59502732	3	2	341	1	0	0	0	0	1	0	0	0	10144	1667	58	5	2047	5	MYO1E	15	59502732	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3528037	59502732	43028660	623	37182										
HERC1	0	genome.wustl.edu	37	chr15	63972327	63972327	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acacatgggtacaactctgcTgcatccacatcttcaaaagc	6	13	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	63972327	63972327	T	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.6498	p.A2166	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	166	0	0	39	10	20.41	-	-	-	C	63972327	T	C	63972327	2	2	341	1	0	0	0	0	0	0	0	1	7108	1567	55	5		5	HERC1	15	63972327	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	4469595	63972327	38559065	624	37183										
DENND4A	0	genome.wustl.edu	37	chr15	66044753	66044753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcttgtcgactttgcagaaCgtgtgtggtgggctttctcc	12	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	66044753	66044753	C	T	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	silent	c.525	p.T175	0.995	smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485	317	0	0	75	16	17.58	-	-	-	T	66044753	C	T	66044753	2	4	341	1	0	0	0	0	0	0	0	1	4469	523	19	1		1	DENND4A	15	66044753	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2072426	66044753	36486639	625	37184										
LRRC49	0	genome.wustl.edu	37	chr15	71256256	71256256	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgcagctgcgccagctagaTatgaagagaatcacggtgag	13	8	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	71256256	71256256	T	C	SNP	LRRC49	ENST00000260382	human	ensembl	69_37n	1	known	silent	c.906	p.D302	0.994	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	227	0	0	43	7	14	-	-	-	C	71256256	T	C	71256256	2	2	341	1	0	0	0	0	0	0	0	1	9072	1403	49	5		5	LRRC49	15	71256256	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5211503	71256256	31275136	626	37185										
ULK3	0	genome.wustl.edu	37	chr15	75134765	75134765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acttcacgagtgtccttctgCgagacaggagatttggggac	13	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	75134765	75134765	C	T	SNP	ULK3	ENST00000562161	human	ensembl	69_37n	-1	known	missense	c.161	p.R54H	0.000	NULL	NULL	-	no_errors	ULK3	HGNC	ENSG00000140474	264	1	0.37	367	57	13.41	-	-	-	T	75134765	C	T	75134765	3	4	341	1	0	0	0	0	1	0	0	0	17074	783	27	1		1	ULK3	15	75134765	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3878509	75134765	27396627	627	37186										
C15orf39	0	genome.wustl.edu	37	chr15	75498614	75498614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacccacccttgtactctacCggtatggcaggacccccact	7	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	75498614	75498614	C	T	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	silent	c.225	p.T75	0.008	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	112	0	0	130	38	22.62	-	-	-	T	75498614	C	T	75498614	2	4	341	1	0	0	0	0	0	0	0	1	1805	639	23	1		1	C15orf39	15	75498614	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	363849	75498614	27032778	628	37187										
TMC3	0	genome.wustl.edu	37	chr15	81625307	81625307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcacgttcctggggtacagcTccacaatgtcacctgaagca	10	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	81625307	81625307	T	C	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	missense	c.2756	p.E919G	1.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	38	0	0	28	8	22.22	-	-	-	C	81625307	T	C	81625307	3	2	341	1	0	0	0	0	1	0	0	0	16081	1551	54	5	550	5	TMC3	15	81625307	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	6126693	81625307	20906085	629	37188										
ISG20	0	genome.wustl.edu	37	chr15	89198775	89198775	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagactgaagccccatccagCccgttccgcagggactagag	11	15	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	89198775	89198775	C	T	SNP	ISG20	ENST00000560746	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ISG20	HGNC	ENSG00000172183	28	0	0	26	12	31.58	-	-	-	T	89198775	C	T	89198775	1	4	341	0	1	0	0	0	0	0	0	0	7908	754	26	4		4	ISG20	15	89198775	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7573468	89198775	13332617	630	37189										
FANCI	0	genome.wustl.edu	37	chr15	89828362	89828362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacagccattacaattctgtCgccaatgaaactttttgcct	5	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	89828362	89828362	C	T	SNP	FANCI	ENST00000561894	human	ensembl	69_37n	1	putative	missense	c.1213	p.R405C	0.018	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FANCI	HGNC	ENSG00000140525	446	0	0	91	13	12.5	-	-	-	T	89828362	C	T	89828362	3	4	341	1	0	0	0	0	1	0	0	0	5715	871	31	1	1800	1	FANCI	15	89828362	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	629587	89828362	12703030	631	37190										
ANPEP	0	genome.wustl.edu	37	chr15	90349559	90349559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtacggtctcagcgtcacccGgtaggaatcgggtttcagcg	14	11	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	90349559	90349559	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	missense	c.256	p.R86W	0.669	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	180	1	0.55	217	82	27.15	-	-	-	A	90349559	G	A	90349559	3	1	341	1	0	0	0	0	1	0	0	0	709	1115	39	1	2727	1	ANPEP	15	90349559	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	521197	90349559	12181833	632	37191										
FURIN	0	genome.wustl.edu	37	chr15	91419771	91419771	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccacagaccccaagtttcCtcagcagtggtacctggtac	9	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	91419771	91419771	C	A	SNP	FURIN	ENST00000268171	human	ensembl	69_37n	1	known	missense	c.356	p.P119H	0.989	superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	352	0	0	336	131	27.99	-	-	-	A	91419771	C	A	91419771	3	1	341	1	0	0	0	0	1	0	0	0	6148	681	24	4	366	4	FURIN	15	91419771	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1070212	91419771	11111621	633	37192										
CHD2	0	genome.wustl.edu	37	chr15	93482825	93482825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagaacagtgcccaaacctcGtgttaaaaagcagccgaaga	9	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	93482825	93482825	G	A	SNP	CHD2	ENST00000420239	human	ensembl	69_37n	1	known	missense	c.569	p.R190H	0.998	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	105	0	0	44	5	10.2	-	-	-	A	93482825	G	A	93482825	3	1	341	1	0	0	0	0	1	0	0	0	3354	1145	40	1	591	1	CHD2	15	93482825	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2063054	93482825	9048567	634	37193										
ALDH1A3	0	genome.wustl.edu	37	chr15	101438317	101438317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctggttaaagaagctgcgtcCcggagcaatctgaagcgggt	14	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	101438317	101438317	C	T	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	silent	c.810	p.S270	0.003	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	93	0	0	102	17	14.17	-	-	-	T	101438317	C	T	101438317	2	4	341	1	0	0	0	0	0	0	0	1	492	610	22	4		4	ALDH1A3	15	101438317	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7955492	101438317	1093075	635	37194										
LRRK1	0	genome.wustl.edu	37	chr15	101566237	101566237	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttaattgaagccaagttccGtgtggaaaggattgcaacgc	11	7	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	15	101566237	101566237	G	A	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.2300	p.R767H	1.000	pfam_Small_GTPase_ARF/SAR	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	137	1	0.72	146	17	10.3	-	-	-	A	101566237	G	A	101566237	3	1	341	1	0	0	0	0	1	0	0	0	9098	1145	40	1	2362	1	LRRK1	15	101566237	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	127920	101566237	965155	636	37195										
RGS11	0	genome.wustl.edu	37	chr16	321297	321297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatcgtggggtccacgctggCcgcagaaactcaggtacctg	14	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	321297	321297	C	T	SNP	RGS11	ENST00000397770	human	ensembl	69_37n	-1	known	missense	c.767	p.G256D	0.660	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS11	HGNC	ENSG00000076344	41	0	0	89	12	11.88	-	-	-	T	321297	C	T	321297	3	4	341	1	0	0	0	0	1	0	0	0	13378	739	26	4	660	4	RGS11	16	321297	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		321297	90033456	637	37196										
PDIA2	0	genome.wustl.edu	37	chr16	335568	335568	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgctgcagtactttggactCaaggctgaggcagcccccac	12	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	335568	335568	C	T	SNP	PDIA2	ENST00000219406	human	ensembl	69_37n	1	known	silent	c.984	p.L328	0.345	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615	157	0	0	162	33	16.84	-	-	-	T	335568	C	T	335568	2	4	341	1	0	0	0	0	0	0	0	1	11741	813	29	2		2	PDIA2	16	335568	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	14271	335568	90019185	638	37197										
SOLH	0	genome.wustl.edu	37	chr16	599131	599131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctccgtcttcagggaccacAgggccacgtggtctgtgttc	13	13	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	599131	599131	A	G	SNP	SOLH	ENST00000219611	human	ensembl	69_37n	1	known	missense	c.1588	p.R530G	0.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	SOLH	HGNC	ENSG00000103326	100	0	0	120	28	18.92	-	-	-	G	599131	A	G	599131	3	3	341	1	0	0	0	0	1	0	0	0	15014	179	7	5	1594	5	SOLH	16	599131	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	263563	599131	89755622	639	37198										
PIGQ	0	genome.wustl.edu	37	chr16	630909	630909	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgatccatctgctcgtggacCtcatcaactccctgccgctg	8	16	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	630909	630909	C	A	SNP	PIGQ	ENST00000026218	human	ensembl	69_37n	1	known	missense	c.1468	p.L490I	1.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	123	0	0	127	54	29.83	-	-	-	A	630909	C	A	630909	3	1	341	1	0	0	0	0	1	0	0	0	11970	681	24	4	1498	4	PIGQ	16	630909	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	31778	630909	89723844	640	37199										
BAIAP3	0	genome.wustl.edu	37	chr16	1398245	1398245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcgcccggccccaggtgggcGggggtgcaagggctgggcag	21	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	1398245	1398245	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	missense	c.3403	p.G1135R	0.001	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	30	0	0	47	10	17.54	-	-	-	A	1398245	G	A	1398245	3	1	341	1	0	0	0	0	1	0	0	0	1308	1116	39	1	3533	1	BAIAP3	16	1398245	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	767336	1398245	88956508	641	37200										
TSC2	0	genome.wustl.edu	37	chr16	2134657	2134657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcaagagagtagagagggaCgccttaaagagcagagccac	15	8	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	2134657	2134657	C	T	SNP	TSC2	ENST00000569110	human	ensembl	69_37n	1	novel	missense	c.616	p.R206C	0.002	NULL	pfam_Rap_GAP,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSC2	HGNC	ENSG00000103197	34	0	0	60	8	11.76	-	-	-	T	2134657	C	T	2134657	3	4	341	1	0	0	0	0	1	0	0	0	16702	535	19	1	4564	1	TSC2	16	2134657	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	736412	2134657	88220096	642	37201										
ZNF75A	0	genome.wustl.edu	37	chr16	3367335	3367335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaagaaaatcattttgatatGcacagagtgggaaaatggca	10	4	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	3367335	3367335	G	A	SNP	ZNF75A	ENST00000574298	human	ensembl	69_37n	1	known	missense	c.357	p.M119I	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086	77	0	0	40	8	16.67	-	-	-	A	3367335	G	A	3367335	3	1	341	1	0	0	0	0	1	0	0	0	18227	1319	46	4	367	4	ZNF75A	16	3367335	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1232678	3367335	86987418	643	37202										
CREBBP	0	genome.wustl.edu	37	chr16	3778245	3778245	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccatctggccaagctgtcccAtctgagccgccatctggccc	9	18	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	3778245	3778245	A	G	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.6803	p.M2268T	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	40	0	0	49	9	15.52	-	-	-	G	3778245	A	G	3778245	3	3	341	1	0	0	0	0	1	0	0	0	3891	217	8	5	529	5	CREBBP	16	3778245	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	410910	3778245	86576508	644	37203										
TXNDC11	0	genome.wustl.edu	37	chr16	11785770	11785770	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccactggggcagcaccacagTgttgcagcagggggacgctg	16	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	11785770	11785770	T	C	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.1357	p.T453A	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	77	0	0	73	15	17.05	-	-	-	C	11785770	T	C	11785770	3	2	341	1	0	0	0	0	1	0	0	0	16889	1696	59	5	1620	5	TXNDC11	16	11785770	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8007525	11785770	78568983	645	37204										
DNAH3	0	genome.wustl.edu	37	chr16	21086873	21086873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttgctggcagctgcaccaatGggctccaatctaaagagaga	11	10	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	21086873	21086873	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.2979	p.P993	0.999	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	54	0	0	28	4	12.5	-	-	-	A	21086873	G	A	21086873	2	1	341	1	0	0	0	0	0	0	0	1	4639	1335	47	4		4	DNAH3	16	21086873	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9301103	21086873	69267880	646	37205										
UQCRC2	0	genome.wustl.edu	37	chr16	21969861	21969861	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctttctttttcaagacgacAaaaggagcttcatctttcaa	5	9	6	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	21969861	21969861	A	G	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	silent	c.273	p.T91	0.983	pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	85	0	0	37	5	11.9	-	-	-	G	21969861	A	G	21969861	2	3	341	1	0	0	0	0	0	0	0	1	17117	117	5	5		5	UQCRC2	16	21969861	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	882988	21969861	68384892	647	37206										
ITGAL	0	genome.wustl.edu	37	chr16	30484196	30484196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactgtgatggccatggcgcTgctgtctgggttctttttct	12	10	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	30484196	30484196	T	C	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	missense	c.38	p.L13P	0.937	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	410	0	0	455	60	11.56	-	-	-	C	30484196	T	C	30484196	3	2	341	1	0	0	0	0	1	0	0	0	7940	1580	55	5	40	5	ITGAL	16	30484196	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8514335	30484196	59870557	648	37207										
SRCAP	0	genome.wustl.edu	37	chr16	30748610	30748610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accacactcctgtcatatccGcccatcaaactcgcagcacc	4	19	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	30748610	30748610	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.7249	p.A2417T	0.016	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	134	0	0	158	27	14.52	-	-	-	A	30748610	G	A	30748610	3	1	341	1	0	0	0	0	1	0	0	0	15226	1087	38	1	7375	1	SRCAP	16	30748610	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	264414	30748610	59606143	649	37208										
STX4	0	genome.wustl.edu	37	chr16	31051129	31051129	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacagtggttggataatgtcGcacattgttggtgagatgtt	13	5	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	31051129	31051129	G	A	SNP	STX4	ENST00000493902	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STX4	HGNC	ENSG00000103496	374	1	0.27	396	139	25.93	-	-	-	A	31051129	G	A	31051129	1	1	341	0	1	0	0	0	0	0	0	0	15438	1102	38	1		1	STX4	16	31051129	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	302519	31051129	59303624	650	37209										
ZNF267	0	genome.wustl.edu	37	chr16	31927702	31927702	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacacatcggagaagtcataGtggagagagaccctacaaat	10	8	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	31927702	31927702	G	C	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	missense	c.2132	p.S711T	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	161	1	0.62	53	8	13.11	-	-	-	C	31927702	G	C	31927702	3	2	341	1	0	0	0	0	1	0	0	0	17902	1029	36	4	2146	4	ZNF267	16	31927702	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	876573	31927702	58427051	651	37210										
TOX3	0	genome.wustl.edu	37	chr16	52484429	52484429	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atcagggagggatcctgccgGtactgggacacttgtgtgtg	16	8	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	52484429	52484429	G	T	SNP	TOX3	ENST00000219746	human	ensembl	69_37n	-1	known	nonsense	c.438	p.Y146*	0.995	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX3	HGNC	ENSG00000103460	226	0	0	42	10	19.23	-	-	-	T	52484429	G	T	52484429	4	4	341	1	0	0	0	0	0	1	0	0	16475	1256	44	4	1308	4	TOX3	16	52484429	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	20556727	52484429	37870324	652	37211										
IRX5	0	genome.wustl.edu	37	chr16	54966396	54966396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtccacactcacctctctgCgtctccaccgcagggctctc	8	19	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	54966396	54966396	C	T	SNP	IRX5	ENST00000558597	human	ensembl	69_37n	1	putative	missense	c.38	p.A13V	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX5	HGNC	ENSG00000176842	21	0	0	55	10	14.93	-	-	-	T	54966396	C	T	54966396	3	4	341	1	0	0	0	0	1	0	0	0	7901	783	27	1		1	IRX5	16	54966396	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2481967	54966396	35388357	653	37212										
BBS2	0	genome.wustl.edu	37	chr16	56518677	56518679	+	In_Frame_Del	DEL	GAA	GAA	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgtattttcctcacctagGaagaagctgtccccactcgc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	56518677	56518679	GAA	-	DEL	BBS2	ENST00000245157	human	ensembl	69_37n	-1	known	in_frame_del	c.2162_2160	p.S721in_frame_del	0.993:1.000:1.000	pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124	210	0	0	38	5	11.63	-	-	-	-	56518679	GAA	-	56518677	7	5	341	1	0	1	0	1	0	0	0	0	1342	1174	41	0	7	0	BBS2	16	56518677	In_Frame_Del	DEL	GAA	TCGA-AO-A128-01A-11D-A10M-09	1552281	56518677	33836076	654	37213										
CIAPIN1	0	genome.wustl.edu	37	chr16	57463180	57463180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctggcacagcggaaggcatCgcccaggtagcactggagag	16	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	57463180	57463180	C	T	SNP	CIAPIN1	ENST00000394391	human	ensembl	69_37n	-1	known	missense	c.841	p.D281N	1.000	pfam_CIAPIN1	pfam_CIAPIN1	-	no_errors	CIAPIN1	HGNC	ENSG00000005194	232	0	0	123	16	11.51	-	-	-	T	57463180	C	T	57463180	3	4	341	1	0	0	0	0	1	0	0	0	3448	884	31	1	101	1	CIAPIN1	16	57463180	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	944503	57463180	32891573	655	37214										
CBFB	0	genome.wustl.edu	37	chr16	67063684	67063684	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggaacgccaggcacgcttcCagaacgcctgccgcgacggc	13	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	67063684	67063684	C	T	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	nonsense	c.133	p.Q45*	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	14	0	0	7	7	50	-	-	-	T	67063684	C	T	67063684	4	4	341	1	0	0	0	0	0	1	0	0	2724	595	21	4	139	4	CBFB	16	67063684	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	9600504	67063684	23291069	656	37215										
EDC4	0	genome.wustl.edu	37	chr16	67913803	67913803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtagcagcagcagcagcagCagtagcagcagctcccttac	12	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	67913803	67913803	C	T	SNP	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	silent	c.1872	p.S624	0.959	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	99	0	0	107	39	26.71	-	-	-	T	67913803	C	T	67913803	2	4	341	1	0	0	0	0	0	0	0	1	4943	709	25	4		4	EDC4	16	67913803	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	850119	67913803	22440950	657	37216										
SMPD3	0	genome.wustl.edu	37	chr16	68404921	68404921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcagccgtagaccccgacGtcgtacaggatgtactcgaa	12	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	68404921	68404921	G	A	SNP	SMPD3	ENST00000219334	human	ensembl	69_37n	-1	known	silent	c.1164	p.D388	0.963	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056	118	0	0	136	34	20	-	-	-	A	68404921	G	A	68404921	2	1	341	1	0	0	0	0	0	0	0	1	14895	1136	40	1		1	SMPD3	16	68404921	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	491118	68404921	21949832	658	37217										
ZFP90	0	genome.wustl.edu	37	chr16	68597461	68597461	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaaacaccatgaatgtacCgactgtgggaaaacctttct	8	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	68597461	68597461	C	T	SNP	ZFP90	ENST00000398253	human	ensembl	69_37n	1	known	silent	c.771	p.T257	0.955	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939	46	0	0	8	5	38.46	-	-	-	T	68597461	C	T	68597461	2	4	341	1	0	0	0	0	0	0	0	1	17750	639	23	1		1	ZFP90	16	68597461	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	192540	68597461	21757292	659	37218										
CDH1	0	genome.wustl.edu	37	chr16	68867203	68867203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcttctttagaatctgaaagCggctgatactgaccccacag	8	11	3	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	68867203	68867203	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.2450	p.A817V	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	92	0	0	56	12	17.65	-	-	-	T	68867203	C	T	68867203	3	4	341	1	0	0	0	0	1	0	0	0	3124	768	27	1	2512	1	CDH1	16	68867203	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	269742	68867203	21487550	660	37219										
WWP2	0	genome.wustl.edu	37	chr16	69973017	69973017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcccgtcgggggatttgccGaactcatcggtatgttttct	12	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	69973017	69973017	G	A	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.2431	p.E811K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	222	0	0	225	89	28.25	-	-	-	A	69973017	G	A	69973017	3	1	341	1	0	0	0	0	1	0	0	0	17513	1059	37	1	2517	1	WWP2	16	69973017	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1105814	69973017	20381736	661	37220										
MLKL	0	genome.wustl.edu	37	chr16	74726290	74726290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttgatttctaatcgtctcAgtgaagcttctattttttca	6	7	4	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	74726290	74726290	A	G	SNP	MLKL	ENST00000308807	human	ensembl	69_37n	-1	known	missense	c.485	p.L162P	0.009	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404	189	0	0	146	21	12.57	-	-	-	G	74726290	A	G	74726290	3	3	341	1	0	0	0	0	1	0	0	0	9690	188	7	5	997	5	MLKL	16	74726290	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4753273	74726290	15628463	662	37221										
ZNRF1	0	genome.wustl.edu	37	chr16	75033946	75033946	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcccgagcctcgctggcggAtgctctacctctgcacatcg	10	17	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	75033946	75033946	A	G	SNP	ZNRF1	ENST00000320619	human	ensembl	69_37n	1	known	missense	c.377	p.D126G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF1	HGNC	ENSG00000186187	114	1	0.87	121	33	21.43	-	-	-	G	75033946	A	G	75033946	3	3	341	1	0	0	0	0	1	0	0	0	18304	333	12	5	379	5	ZNRF1	16	75033946	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	307656	75033946	15320807	663	37222										
BCAR1	0	genome.wustl.edu	37	chr16	75270832	75270832	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccacactggggggcacgtcaTacacctccagcaacgggtct	11	15	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	75270832	75270832	T	C	SNP	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	missense	c.998	p.Y333C	1.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	195	0	0	239	50	17.3	-	-	-	C	75270832	T	C	75270832	3	2	341	1	0	0	0	0	1	0	0	0	1352	1406	49	5	1822	5	BCAR1	16	75270832	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	236886	75270832	15083921	664	37223										
CNTNAP4	0	genome.wustl.edu	37	chr16	76495852	76495852	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taactgatttcatctccctaGgtgtcgaattaaatgatggg	9	7	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	76495852	76495852	G	T	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	splice_site	c.1331-1	e10-1	1.000	-	-	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	174	0	0	44	5	10.2	-	-	-	T	76495852	G	T	76495852	5	4	341	1	0	0	0	0	0	0	1	0	3679	1014	35	4	1380	4	CNTNAP4	16	76495852	Splice_Site	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1225020	76495852	13858901	665	37224										
C16orf7	0	genome.wustl.edu	37	chr16	89785449	89785449	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgtacctttagtggtttccActtcttctagtaacacctgg	7	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	16	89785449	89785449	A	G	SNP	C16orf7	ENST00000389386	human	ensembl	69_37n	-1	known	missense	c.161	p.V54A	0.645	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	C16orf7	HGNC	ENSG00000075399	173	0	0	204	34	14.23	-	-	-	G	89785449	A	G	89785449	3	3	341	1	0	0	0	0	1	0	0	0	1841	159	6	5	1790	5	C16orf7	16	89785449	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	13289597	89785449	569304	666	37225										
FAM101B	0	genome.wustl.edu	37	chr17	293239	293239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccaggggcagctgcacgtCgtcgatgaagtgcctctcgg	15	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	293239	293239	C	T	SNP	FAM101B	ENST00000329099	human	ensembl	69_37n	-1	known	missense	c.151	p.D51N	0.945	NULL	NULL	-	no_start_codon	FAM101B	HGNC	ENSG00000183688	100	0	0	125	25	16.67	-	-	-	T	293239	C	T	293239	3	4	341	1	0	0	0	0	1	0	0	0	5421	884	31	1	287	1	FAM101B	17	293239	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		293239	80901971	667	37226										
PRPF8	0	genome.wustl.edu	37	chr17	1580872	1580872	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactcaccttcaaactgccgGgccaggaggttgccaagcca	10	15	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	1580872	1580872	G	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	silent	c.1971	p.A657	1.000	pfam_PROCN	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	54	0	0	60	16	21.05	-	-	-	T	1580872	G	T	1580872	2	4	341	1	0	0	0	0	0	0	0	1	12656	1219	43	4		4	PRPF8	17	1580872	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1287633	1580872	79614338	668	37227										
OR1E2	0	genome.wustl.edu	37	chr17	3336293	3336293	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgtacatcatagccatgacAgtgtcctttagagtagaact	9	8	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	3336293	3336293	A	C	SNP	OR1E2	ENST00000248384	human	ensembl	69_37n	-1	known	silent	c.843	p.T281	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1E2	HGNC	ENSG00000127780	177	0	0	77	11	12.5	-	-	-	C	3336293	A	C	3336293	2	2	341	1	0	0	0	0	0	0	0	1	11028	175	7	5		5	OR1E2	17	3336293	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1755421	3336293	77858917	669	37228										
TRPV3	0	genome.wustl.edu	37	chr17	3422087	3422087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcactgcgtcgctgaagctgCcgtaggagctgcagtccttg	14	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	3422087	3422087	C	T	SNP	TRPV3	ENST00000301365	human	ensembl	69_37n	-1	known	missense	c.1868	p.G623D	0.959	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	283	0	0	165	25	13.16	-	-	-	T	3422087	C	T	3422087	3	4	341	1	0	0	0	0	1	0	0	0	16693	739	26	4	520	4	TRPV3	17	3422087	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	85794	3422087	77773123	670	37229										
CAMKK1	0	genome.wustl.edu	37	chr17	3786401	3786401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggcaatctcctggtacacccGctccaggggcagcagctgct	12	15	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	3786401	3786401	G	A	SNP	CAMKK1	ENST00000381771	human	ensembl	69_37n	-1	known	missense	c.583	p.R195W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	148	0	0	167	23	12.04	-	-	-	A	3786401	G	A	3786401	3	1	341	1	0	0	0	0	1	0	0	0	2631	1086	38	1	1100	1	CAMKK1	17	3786401	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	364314	3786401	77408809	671	37230										
SPNS2	0	genome.wustl.edu	37	chr17	4434391	4434391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccagcgtgaagcaggcagccGgagactggcactgggcattg	16	11	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	4434391	4434391	G	A	SNP	SPNS2	ENST00000329078	human	ensembl	69_37n	1	known	missense	c.769	p.G257R	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018	113	0	0	129	44	25.29	-	-	-	A	4434391	G	A	4434391	3	1	341	1	0	0	0	0	1	0	0	0	15166	1117	39	1	787	1	SPNS2	17	4434391	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	647990	4434391	76760819	672	37231										
ZNF232	0	genome.wustl.edu	37	chr17	5009308	5009308	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactcatagggcttctctccTgagtgaatcctctgatgctg	9	12	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	5009308	5009308	T	C	SNP	ZNF232	ENST00000250076	human	ensembl	69_37n	-1	known	silent	c.1146	p.S382	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF232	HGNC	ENSG00000167840	190	0	0	189	32	14.48	-	-	-	C	5009308	T	C	5009308	2	2	341	1	0	0	0	0	0	0	0	1	17881	1567	55	5		5	ZNF232	17	5009308	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	574917	5009308	76185902	673	37232										
FGF11	0	genome.wustl.edu	37	chr17	7345991	7345991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtacgcctctgctctctacCgccagcgtcgttctggccgg	11	16	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7345991	7345991	C	T	SNP	FGF11	ENST00000293829	human	ensembl	69_37n	1	known	missense	c.487	p.R163C	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF11	HGNC	ENSG00000161958	131	0	0	168	33	16.42	-	-	-	T	7345991	C	T	7345991	3	4	341	1	0	0	0	0	1	0	0	0	5886	652	23	1	501	1	FGF11	17	7345991	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2336683	7345991	73849219	674	37233										
POLR2A	0	genome.wustl.edu	37	chr17	7412272	7412272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctcttcccaggatattctgTgccgtctggagcatacaacg	9	12	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7412272	7412272	T	C	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	missense	c.3475	p.C1159R	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	177	1	0.56	145	56	27.59	-	-	-	C	7412272	T	C	7412272	3	2	341	1	0	0	0	0	1	0	0	0	12288	1696	59	5	3557	5	POLR2A	17	7412272	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	66281	7412272	73782938	675	37234										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	132	0	0	61	25	29.07	-	-	-	A	7574003	G	A	7574003	4	1	341	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	161731	7574003	73621207	676	37235										
DNAH2	0	genome.wustl.edu	37	chr17	7733997	7733997	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtcagaaaacttgctgagcCtctatctcgatgagtacgag	10	9	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7733997	7733997	C	A	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.12067	p.L4023I	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	159	0	0	202	34	14.41	-	-	-	A	7733997	C	A	7733997	3	1	341	1	0	0	0	0	1	0	0	0	4638	681	24	4	12377	4	DNAH2	17	7733997	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	159994	7733997	73461213	677	37236										
CYB5D1	0	genome.wustl.edu	37	chr17	7761689	7761689	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctggttctcgaagggctgGcattgacagtggctgtgctg	16	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7761689	7761689	G	A	SNP	CYB5D1	ENST00000574196	human	ensembl	69_37n	1	known	nonsense	c.87	p.W29*	0.000	NULL	NULL	-	no_start_codon	CYB5D1	HGNC	ENSG00000182224	132	0	0	199	36	15.25	-	-	-	A	7761689	G	A	7761689	4	1	341	1	0	0	0	0	0	1	0	0	4155	1218	42	4		4	CYB5D1	17	7761689	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	27692	7761689	73433521	678	37237										
CHD3	0	genome.wustl.edu	37	chr17	7788214	7788214	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaggaagaagagggcgacgaGgaggaggaggaggaggtgga	24	2	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	7788214	7788214	G	C	SNP	CHD3	ENST00000380358	human	ensembl	69_37n	1	novel	missense	c.90	p.E30D	0.987	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	23	0	0	40	8	16.67	-	-	-	C	7788214	G	C	7788214	3	2	341	1	0	0	0	0	1	0	0	0	3355	991	35	4	92	4	CHD3	17	7788214	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	26525	7788214	73406996	679	37238										
KRBA2	0	genome.wustl.edu	37	chr17	8273418	8273418	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgagtagcctctatcagtttCtctgtgccctgtacagagat	9	10	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	8273418	8273418	C	A	SNP	KRBA2	ENST00000331336	human	ensembl	69_37n	-1	known	missense	c.513	p.E171D	0.978	NULL	pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core	-	no_errors	KRBA2	HGNC	ENSG00000184619	206	0	0	173	65	27.31	-	-	-	A	8273418	C	A	8273418	3	1	341	1	0	0	0	0	1	0	0	0	8493	912	32	2	969	2	KRBA2	17	8273418	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	485204	8273418	72921792	680	37239										
NCOR1	0	genome.wustl.edu	37	chr17	15968868	15968868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctctggccacatctggacGcaagttcacttgcatctgtt	8	13	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	15968868	15968868	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.4882	p.R1628C	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	373	0	0	81	24	22.86	-	-	-	A	15968868	G	A	15968868	3	1	341	1	0	0	0	0	1	0	0	0	10307	1087	38	1	2496	1	NCOR1	17	15968868	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	7695450	15968868	65226342	681	37240										
TRPV2	0	genome.wustl.edu	37	chr17	16335335	16335335	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagctcctacaggccccaaTgccacagagtcagtgcagcc	10	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	16335335	16335335	T	C	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	silent	c.1710	p.N570	0.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	64	0	0	55	13	19.12	-	-	-	C	16335335	T	C	16335335	2	2	341	1	0	0	0	0	0	0	0	1	16692	1461	51	5		5	TRPV2	17	16335335	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	366467	16335335	64859875	682	37241										
LRRC48	0	genome.wustl.edu	37	chr17	17900948	17900948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcgaggagaagcacttgtcGgtaggccccgagcctcctga	13	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	17900948	17900948	G	A	SNP	LRRC48	ENST00000313838	human	ensembl	69_37n	1	known	silent	c.999	p.S333	0.907	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	91	0	0	45	33	42.31	-	-	-	A	17900948	G	A	17900948	2	1	341	1	0	0	0	0	0	0	0	1	9071	1130	39	1		1	LRRC48	17	17900948	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1565613	17900948	63294262	683	37242										
TOP3A	0	genome.wustl.edu	37	chr17	18205630	18205630	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctgaatggctttgaaccgCtccaccacaaagcccagtgt	9	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	18205630	18205630	C	A	SNP	TOP3A	ENST00000321105	human	ensembl	69_37n	-1	known	missense	c.762	p.E254D	0.996	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2,prints_Topo_IA	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302	45	0	0	45	19	29.69	-	-	-	A	18205630	C	A	18205630	3	1	341	1	0	0	0	0	1	0	0	0	16463	796	28	4	2295	4	TOP3A	17	18205630	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	304682	18205630	62989580	684	37243										
SMCR8	0	genome.wustl.edu	37	chr17	18225993	18225993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgctacagccgctacacgaGcatcctggaccttgacaaca	8	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	18225993	18225993	G	A	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	missense	c.2423	p.S808N	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	141	0	0	113	22	16.3	-	-	-	A	18225993	G	A	18225993	3	1	341	1	0	0	0	0	1	0	0	0	14881	971	34	4	2429	4	SMCR8	17	18225993	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	20363	18225993	62969217	685	37244										
TBC1D28	0	genome.wustl.edu	37	chr17	18541993	18541993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttttgccacttgttggtacGtttactttccttgcgtcttt	7	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	18541993	18541993	G	A	SNP	TBC1D28	ENST00000345096	human	ensembl	69_37n	-1	known	missense	c.220	p.R74C	0.001	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D28	HGNC	ENSG00000189375	390	0	0	419	130	23.55	-	-	-	A	18541993	G	A	18541993	3	1	341	1	0	0	0	0	1	0	0	0	15709	1145	40	1	428	1	TBC1D28	17	18541993	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	316000	18541993	62653217	686	37245										
MAPK7	0	genome.wustl.edu	37	chr17	19284193	19284193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgactgagtatgtggccaCgcgctggtaccgtgcgcccg	14	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	19284193	19284193	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	69_37n	1	known	missense	c.671	p.T224M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484	182	0	0	207	39	15.79	-	-	-	T	19284193	C	T	19284193	3	4	341	1	0	0	0	0	1	0	0	0	9353	536	19	1	681	1	MAPK7	17	19284193	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	742200	19284193	61911017	687	37246										
MAPK7	0	genome.wustl.edu	37	chr17	19285139	19285139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcctgagcctcggaagccggTgacagcccaggagcgccagc	14	15	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	19285139	19285139	T	C	SNP	MAPK7	ENST00000308406	human	ensembl	69_37n	1	known	missense	c.1523	p.V508A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484	17	0	0	44	15	24.59	-	-	-	C	19285139	T	C	19285139	3	2	341	1	0	0	0	0	1	0	0	0	9353	1696	59	5	1537	5	MAPK7	17	19285139	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	946	19285139	61910071	688	37247										
RNF112	0	genome.wustl.edu	37	chr17	19315830	19315830	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtcccatacacctttccccAagttggagctaggcctgggg	12	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	19315830	19315830	A	C	SNP	RNF112	ENST00000461366	human	ensembl	69_37n	1	novel	missense	c.115	p.K39Q	0.614	NULL	pfam_Guanylate-bd_N,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482	117	0	0	161	28	14.74	-	-	-	C	19315830	A	C	19315830	3	2	341	1	0	0	0	0	1	0	0	0	13512	131	5	5		5	RNF112	17	19315830	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	30691	19315830	61879380	689	37248										
GIT1	0	genome.wustl.edu	37	chr17	27901887	27901887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgcagccggtaggcgctggCgttgagcagccgcagtgagc	17	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	27901887	27901887	C	T	SNP	GIT1	ENST00000394869	human	ensembl	69_37n	-1	known	missense	c.2146	p.A716T	0.996	pfam_GIT1_C	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262	31	0	0	85	12	12.37	-	-	-	T	27901887	C	T	27901887	3	4	341	1	0	0	0	0	1	0	0	0	6448	768	27	1	170	1	GIT1	17	27901887	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	8586057	27901887	53293323	690	37249										
SLFN13	0	genome.wustl.edu	37	chr17	33771867	33771867	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatgaacaatgggcaacttaGaaattgctcttgcaattaca	7	7	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	33771867	33771867	G	C	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	missense	c.833	p.S278C	0.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	117	0	0	109	21	16.03	-	-	-	C	33771867	G	C	33771867	3	2	341	1	0	0	0	0	1	0	0	0	14825	942	33	2	1876	2	SLFN13	17	33771867	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5869980	33771867	47423343	691	37250										
ACACA	0	genome.wustl.edu	37	chr17	35478306	35478306	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caccagagaagcctctccagTtggcaaagaccatcagaggc	10	13	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	35478306	35478306	T	C	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.6245	p.N2082S	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	158	0	0	36	11	23.4	-	-	-	C	35478306	T	C	35478306	3	2	341	1	0	0	0	0	1	0	0	0	106	1725	60	5	934	5	ACACA	17	35478306	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1706439	35478306	45716904	692	37251										
SYNRG	0	genome.wustl.edu	37	chr17	35902636	35902636	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaaaattgctactgtagctTccaaaagcagcatattttaa	6	8	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	35902636	35902636	T	C	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	silent	c.2640	p.G880	0.996	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	54	0	0	15	6	28.57	-	-	-	C	35902636	T	C	35902636	2	2	341	1	0	0	0	0	0	0	0	1	15552	1770	62	5		5	SYNRG	17	35902636	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	424330	35902636	45292574	693	37252										
ERBB2	0	genome.wustl.edu	37	chr17	37881061	37881061	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacatccacggtgcagctggTgacacagcttatgccctatg	11	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	37881061	37881061	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2390	p.V797A	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	179	1	0.55	238	37	13.41	-	-	-	C	37881061	T	C	37881061	3	2	341	1	0	0	0	0	1	0	0	0	5243	1696	59	5	2468	5	ERBB2	17	37881061	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1978425	37881061	43314149	694	37253										
THRA	0	genome.wustl.edu	37	chr17	38243001	38243001	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccattgtctccatgccggaCggagacaaggtggacctgga	13	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	38243001	38243001	C	T	SNP	THRA	ENST00000264637	human	ensembl	69_37n	1	known	silent	c.618	p.D206	0.608	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351	122	0	0	120	35	22.29	-	-	-	T	38243001	C	T	38243001	2	4	341	1	0	0	0	0	0	0	0	1	15968	535	19	1		1	THRA	17	38243001	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	361940	38243001	42952209	695	37254										
NR1D1	0	genome.wustl.edu	37	chr17	38253389	38253389	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggccacttgtagactcccaGgggggctcccattatagaag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	38253389	38253389	G	-	DEL	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	frame_shift_del	c.299	p.P100fs	0.266	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	99	0	0	139	20	12.58	-	-	-	-	38253389	G	-	38253389	7	5	341	1	0	1	0	1	0	0	0	0	10688	1000	35	0	1573	0	NR1D1	17	38253389	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	10388	38253389	42941821	696	37255										
SMARCE1	0	genome.wustl.edu	37	chr17	38788559	38788559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taagaatttcactgatgaggCggtggtttctctggaaacgg	13	6	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	38788559	38788559	C	T	SNP	SMARCE1	ENST00000348513	human	ensembl	69_37n	-1	known	missense	c.602	p.R201H	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SMARCE1	HGNC	ENSG00000073584	202	0	0	25	5	16.67	-	-	-	T	38788559	C	T	38788559	3	4	341	1	0	0	0	0	1	0	0	0	14869	768	27	1	649	1	SMARCE1	17	38788559	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	535170	38788559	42406651	697	37256										
KRT31	0	genome.wustl.edu	37	chr17	39553614	39553614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcggtcgttcaggaactgcaTagtctccttctcgctaccat	9	13	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	39553614	39553614	T	C	SNP	KRT31	ENST00000251645	human	ensembl	69_37n	-1	known	missense	c.178	p.M60V	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796	166	0	0	191	36	15.72	-	-	-	C	39553614	T	C	39553614	3	2	341	1	0	0	0	0	1	0	0	0	8520	1406	49	5	1100	5	KRT31	17	39553614	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	765055	39553614	41641596	698	37257										
TTC25	0	genome.wustl.edu	37	chr17	40087052	40087052	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaggcgagcggctctacctgTgcggggaattttctaaagcc	13	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	40087052	40087052	T	C	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.885	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	37	0	0	60	13	17.81	-	-	-	C	40087052	T	C	40087052	1	2	341	0	1	0	0	0	0	0	0	0	16790	1696	59	5		5	TTC25	17	40087052	RNA	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	533438	40087052	41108158	699	37258										
STAT3	0	genome.wustl.edu	37	chr17	40481576	40481576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctcctcccacataccaagTgtttgaattctgcagagagg	9	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	40481576	40481576	T	C	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	missense	c.1229	p.H410R	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	121	1	0.81	76	16	17.39	-	-	-	C	40481576	T	C	40481576	3	2	341	1	0	0	0	0	1	0	0	0	15357	1696	59	5	1131	5	STAT3	17	40481576	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	394524	40481576	40713634	700	37259										
PTRF	0	genome.wustl.edu	37	chr17	40557081	40557081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcttctccagggtgtgccgcGtcttctccaggttttccttg	11	13	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	40557081	40557081	G	A	SNP	PTRF	ENST00000357037	human	ensembl	69_37n	-1	known	missense	c.797	p.T266M	1.000	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469	365	0	0	498	70	12.28	-	-	-	A	40557081	G	A	40557081	3	1	341	1	0	0	0	0	1	0	0	0	12898	1145	40	1	379	1	PTRF	17	40557081	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	75505	40557081	40638129	701	37260										
FAM134C	0	genome.wustl.edu	37	chr17	40738079	40738079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtcatacttacgcatcaagTaggacagcagaagcccaggg	11	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	40738079	40738079	T	C	SNP	FAM134C	ENST00000309428	human	ensembl	69_37n	-1	known	missense	c.581	p.Y194C	0.999	NULL	NULL	-	no_errors	FAM134C	HGNC	ENSG00000141699	210	0	0	109	15	12.1	-	-	-	C	40738079	T	C	40738079	3	2	341	1	0	0	0	0	1	0	0	0	5487	1638	57	5	839	5	FAM134C	17	40738079	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	180998	40738079	40457131	702	37261										
DHX8	0	genome.wustl.edu	37	chr17	41598850	41598850	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacaacaagttctccaacccAtggtgctatgagaactttat	6	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	41598850	41598850	A	C	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	silent	c.3180	p.P1060	0.019	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	162	0	0	49	6	10.91	-	-	-	C	41598850	A	C	41598850	2	2	341	1	0	0	0	0	0	0	0	1	4551	204	8	5		5	DHX8	17	41598850	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	860771	41598850	39596360	703	37262										
FMNL1	0	genome.wustl.edu	37	chr17	43318501	43318501	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgctggtgctacagctgacAgagcggcttcgggacgcgga	17	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	43318501	43318501	A	G	SNP	FMNL1	ENST00000328118	human	ensembl	69_37n	1	known	silent	c.1236	p.T412	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL1	HGNC	ENSG00000184922	36	0	0	53	6	10.17	-	-	-	G	43318501	A	G	43318501	2	3	341	1	0	0	0	0	0	0	0	1	5997	175	7	5		5	FMNL1	17	43318501	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1719651	43318501	37876709	704	37263										
ZNF652	0	genome.wustl.edu	37	chr17	47375977	47375977	+	Frame_Shift_Del	DEL	G	G	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggggtgggggatgggccgaGggggaagagtgcttacagga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	47375977	47375977	G	-	DEL	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	frame_shift_del	c.1619	p.P540fs	0.935	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	457	0	0	175	20	10.2	-	-	-	-	47375977	G	-	47375977	7	5	341	1	0	1	0	1	0	0	0	0	18161	1000	35	0	205	0	ZNF652	17	47375977	Frame_Shift_Del	DEL	G	TCGA-AO-A128-01A-11D-A10M-09	4057476	47375977	33819233	705	37264										
PPP1R9B	0	genome.wustl.edu	37	chr17	48218667	48218667	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggtgttccggagcacagacGccgcgaagctctgggtcact	14	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	48218667	48218667	G	A	SNP	PPP1R9B	ENST00000316878	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPP1R9B	HGNC	ENSG00000108819	140	0	0	136	56	29.02	-	-	-	A	48218667	G	A	48218667	1	1	341	0	1	0	0	0	0	0	0	0	12456	1087	38	1		1	PPP1R9B	17	48218667	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	842690	48218667	32976543	706	37265										
BZRAP1	0	genome.wustl.edu	37	chr17	56400673	56400673	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctcaccagctcctcacatcGcctctgctttttccgggctt	7	17	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	56400673	56400673	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	nonsense	c.1090	p.R364*	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	172	0	0	219	77	26.01	-	-	-	A	56400673	G	A	56400673	4	1	341	1	0	0	0	0	0	1	0	0	1586	1095	38	1	4583	1	BZRAP1	17	56400673	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	8182006	56400673	24794537	707	37266										
MTMR4	0	genome.wustl.edu	37	chr17	56581521	56581521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gttgcgcttctctcgctcacAggggttgttggccaggaagg	15	10	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	56581521	56581521	A	G	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.1546	p.C516R	0.970	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	160	0	0	81	9	10	-	-	-	G	56581521	A	G	56581521	3	3	341	1	0	0	0	0	1	0	0	0	10018	188	7	5	2065	5	MTMR4	17	56581521	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	180848	56581521	24613689	708	37267										
ACE	0	genome.wustl.edu	37	chr17	61568598	61568598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccaggaggatgtttaaggAggctgatgatttcttcacct	12	8	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	61568598	61568598	A	G	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.2768	p.E923G	1.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	83	0	0	89	30	25.21	-	-	-	G	61568598	A	G	61568598	3	3	341	1	0	0	0	0	1	0	0	0	136	304	11	5	3045	5	ACE	17	61568598	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4987077	61568598	19626612	709	37268										
CSH1	0	genome.wustl.edu	37	chr17	61972880	61972880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taggtcctttaggaggtgatAgtcatcgctgtccgaggtgt	14	7	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	61972880	61972880	A	G	SNP	CSH1	ENST00000316193	human	ensembl	69_37n	-1	known	missense	c.409	p.Y137H	0.902	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488	196	0	0	109	21	16.15	-	-	-	G	61972880	A	G	61972880	3	3	341	1	0	0	0	0	1	0	0	0	3972	420	15	5	501	5	CSH1	17	61972880	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	404282	61972880	19222330	710	37269										
C17orf72	0	genome.wustl.edu	37	chr17	62079133	62079133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcctatgaggacagaccccGgccctgggaactgcaccagc	11	16	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	62079133	62079133	G	A	SNP	C17orf72	ENST00000425164	human	ensembl	69_37n	1	known	missense	c.509	p.R170Q	0.001	NULL	NULL	-	no_errors	C17orf72	HGNC	ENSG00000224383	70	0	0	105	15	12.5	-	-	-	A	62079133	G	A	62079133	3	1	341	1	0	0	0	0	1	0	0	0	1894	1131	39	1		1	C17orf72	17	62079133	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	106253	62079133	19116077	711	37270										
CACNG4	0	genome.wustl.edu	37	chr17	65021037	65021037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atcctgctcctgctgggtggCctgtgcatcggtgctggcag	15	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	65021037	65021037	C	T	SNP	CACNG4	ENST00000262138	human	ensembl	69_37n	1	known	silent	c.366	p.G122	0.790	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461	259	0	0	243	42	14.74	-	-	-	T	65021037	C	T	65021037	2	4	341	1	0	0	0	0	0	0	0	1	2584	726	26	4		4	CACNG4	17	65021037	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2941904	65021037	16174173	712	37271										
BPTF	0	genome.wustl.edu	37	chr17	65908824	65908824	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgatcaaggtagaaaaaggCgataagcaaactgtggtttc	12	5	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	65908824	65908824	C	A	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	silent	c.5202	p.G1734	0.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	68	0	0	21	4	16	-	-	-	A	65908824	C	A	65908824	2	1	341	1	0	0	0	0	0	0	0	1	1503	755	27	3		3	BPTF	17	65908824	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	887787	65908824	15286386	713	37272										
ABCA8	0	genome.wustl.edu	37	chr17	66872814	66872814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtcttcacgggagacttcagCtggtcctgcagcttgagcgc	13	12	3	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	66872814	66872814	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	silent	c.4230	p.Q1410	0.992	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	261	0	0	99	12	10.81	-	-	-	T	66872814	C	T	66872814	2	4	341	1	0	0	0	0	0	0	0	1	38	796	28	4		4	ABCA8	17	66872814	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	963990	66872814	14322396	714	37273										
ABCA10	0	genome.wustl.edu	37	chr17	67149622	67149622	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcccatacctttctctttAttccctctgatagagttttc	5	12	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	67149622	67149622	A	C	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.4031	p.I1344R	0.001	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	53	0	0	14	4	22.22	-	-	-	C	67149622	A	C	67149622	3	2	341	1	0	0	0	0	1	0	0	0	29	449	16	5	628	5	ABCA10	17	67149622	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	276808	67149622	14045588	715	37274										
KCNJ16	0	genome.wustl.edu	37	chr17	68129040	68129040	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcccttgaccgcaaagcagTagccaaagataactttgaga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	68129040	68129040	T	-	DEL	KCNJ16	ENST00000283936	human	ensembl	69_37n	1	known	frame_shift_del	c.812	p.V271fs	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ16	HGNC	ENSG00000153822	69	0	0	6	3	33.33	-	-	-	-	68129040	T	-	68129040	7	5	341	1	0	1	0	1	0	0	0	0	8104	1638	57	0	814	0	KCNJ16	17	68129040	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	979418	68129040	13066170	716	37275										
GRIN2C	0	genome.wustl.edu	37	chr17	72847756	72847756	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggttgagggcgatcaccaccAtggtgggctggaccaggtac	16	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	72847756	72847756	A	G	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	missense	c.1073	p.M358T	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	105	0	0	119	16	11.85	-	-	-	G	72847756	A	G	72847756	3	3	341	1	0	0	0	0	1	0	0	0	6832	217	8	5	2668	5	GRIN2C	17	72847756	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4718716	72847756	8347454	717	37276										
ARMC7	0	genome.wustl.edu	37	chr17	73124792	73124792	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaggcctgtgcaacctgtgcCcagacagggccaacaaggag	14	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	73124792	73124792	C	A	SNP	ARMC7	ENST00000245543	human	ensembl	69_37n	1	known	missense	c.256	p.P86T	0.002	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC7	HGNC	ENSG00000125449	68	0	0	113	18	13.74	-	-	-	A	73124792	C	A	73124792	3	1	341	1	0	0	0	0	1	0	0	0	960	623	22	4	266	4	ARMC7	17	73124792	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	277036	73124792	8070418	718	37277										
UNK	0	genome.wustl.edu	37	chr17	73808228	73808228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagaaccacaggggacactgAgcgcaggtaccaccttcgtt	11	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	73808228	73808228	A	C	SNP	UNK	ENST00000293218	human	ensembl	69_37n	1	known	missense	c.578	p.E193A	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478	283	0	0	283	38	11.84	-	-	-	C	73808228	A	C	73808228	3	2	341	1	0	0	0	0	1	0	0	0	17097	304	11	5	592	5	UNK	17	73808228	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	683436	73808228	7386982	719	37278										
DNAH17	0	genome.wustl.edu	37	chr17	76487614	76487614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccacttggggccgtcatgggTgatgttggccaggtctcgca	15	11	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	76487614	76487614	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.6538	p.T2180A	0.999	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	448	1	0.22	517	88	14.52	-	-	-	C	76487614	T	C	76487614	3	2	341	1	0	0	0	0	1	0	0	0	4637	1696	59	5	6964	5	DNAH17	17	76487614	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2679386	76487614	4707596	720	37279										
CBX4	0	genome.wustl.edu	37	chr17	77808911	77808911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggggctgggcgcctccttgTggccgccctggtactgcagg	17	13	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	77808911	77808911	T	C	SNP	CBX4	ENST00000269397	human	ensembl	69_37n	-1	known	missense	c.530	p.H177R	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582	162	0	0	259	51	16.35	-	-	-	C	77808911	T	C	77808911	3	2	341	1	0	0	0	0	1	0	0	0	2745	1696	59	5	1156	5	CBX4	17	77808911	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1321297	77808911	3386299	721	37280										
CCDC40	0	genome.wustl.edu	37	chr17	78059842	78059842	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagcttgaaatcaaaaggcTgagcaagctgatcgacgagc	13	8	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	78059842	78059842	T	C	SNP	CCDC40	ENST00000397545	human	ensembl	69_37n	1	known	missense	c.2276	p.L759P	0.890	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	59	0	0	77	13	14.44	-	-	-	C	78059842	T	C	78059842	3	2	341	1	0	0	0	0	1	0	0	0	2838	1580	55	5	2330	5	CCDC40	17	78059842	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	250931	78059842	3135368	722	37281										
GAA	0	genome.wustl.edu	37	chr17	78083794	78083794	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggagctacaggccctacgaCgagggtctgcggaggggggt	20	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	78083794	78083794	C	T	SNP	GAA	ENST00000302262	human	ensembl	69_37n	1	known	silent	c.1377	p.D459	0.293	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298	42	0	0	54	16	22.86	-	-	-	T	78083794	C	T	78083794	2	4	341	1	0	0	0	0	0	0	0	1	6196	535	19	1		1	GAA	17	78083794	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	23952	78083794	3111416	723	37282										
RNF213	0	genome.wustl.edu	37	chr17	78320640	78320640	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcaggggaaggacctgcaGcagtacgtctctgtggtggt	16	9	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	78320640	78320640	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.8505	p.Q2835	0.015	smart_AAA+_ATPase	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	115	0	0	124	16	11.35	-	-	-	A	78320640	G	A	78320640	2	1	341	1	0	0	0	0	0	0	0	1	13563	962	34	4		4	RNF213	17	78320640	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	236846	78320640	2874570	724	37283										
RPTOR	0	genome.wustl.edu	37	chr17	78682756	78682756	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atagtgaggactctgactccGtttcttcacacactgaactc	7	12	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	78682756	78682756	G	A	SNP	RPTOR	ENST00000572733	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RPTOR	HGNC	ENSG00000141564	9	0	0	3	7	70	-	-	-	A	78682756	G	A	78682756	1	1	341	0	1	0	0	0	0	0	0	0	13751	1160	40	1		1	RPTOR	17	78682756	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	362116	78682756	2512454	725	37284										
RPTOR	0	genome.wustl.edu	37	chr17	78796975	78796975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tatgaggtcgtataactgcaCtcccgtcagcagcccgcgtc	10	14	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	78796975	78796975	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.1088	p.T363I	1.000	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	121	0	0	194	44	18.49	-	-	-	T	78796975	C	T	78796975	3	4	341	1	0	0	0	0	1	0	0	0	13751	565	20	4	1122	4	RPTOR	17	78796975	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	114219	78796975	2398235	726	37285										
CCDC137	0	genome.wustl.edu	37	chr17	79639648	79639648	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagagcgggccgtgcaggccTacagagcgttgaagcagcgg	18	10	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	79639648	79639648	T	C	SNP	CCDC137	ENST00000329214	human	ensembl	69_37n	1	known	missense	c.784	p.Y262H	1.000	NULL	NULL	-	no_errors	CCDC137	HGNC	ENSG00000185298	53	0	0	94	14	12.96	-	-	-	C	79639648	T	C	79639648	3	2	341	1	0	0	0	0	1	0	0	0	2796	1522	53	5	806	5	CCDC137	17	79639648	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	842673	79639648	1555562	727	37286										
ASPSCR1	0	genome.wustl.edu	37	chr17	79967367	79967367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccctcctcaccacaggaagcGcctggaagaagcccccttgg	10	17	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	17	79967367	79967367	G	A	SNP	ASPSCR1	ENST00000306729	human	ensembl	69_37n	1	known	missense	c.1094	p.R365H	1.000	NULL	pfam_TUG,pfam_UBX,pfscan_UBX	-	no_errors	ASPSCR1	HGNC	ENSG00000169696	16	0	0	43	16	27.12	-	-	-	A	79967367	G	A	79967367	3	1	341	1	0	0	0	0	1	0	0	0	1063	1087	38	1	1128	1	ASPSCR1	17	79967367	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	327719	79967367	1227843	728	37287										
RALBP1	0	genome.wustl.edu	37	chr18	9525818	9525818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaaagaattttgacagcccTcaaaagaaaactgagagaag	8	7	1	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	9525818	9525818	T	C	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	missense	c.1316	p.L439P	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	74	0	0	59	11	15.71	-	-	-	C	9525818	T	C	9525818	3	2	341	1	0	0	0	0	1	0	0	0	13095	1551	54	5	1334	5	RALBP1	18	9525818	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09		9525818	68551430	729	37288										
NPC1	0	genome.wustl.edu	37	chr18	21134739	21134739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taccgtacgcagtacagaaaGtgcgtgtggtaatcggcata	12	8	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	21134739	21134739	G	A	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.818	p.T273I	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	204	0	0	73	10	11.9	-	-	-	A	21134739	G	A	21134739	3	1	341	1	0	0	0	0	1	0	0	0	10642	1020	36	4	2368	4	NPC1	18	21134739	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	11608921	21134739	56942509	730	37289										
LAMA3	0	genome.wustl.edu	37	chr18	21427492	21427492	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgccgctgccctccccgcacGgtcaggccccagtgtgaggt	13	17	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	21427492	21427492	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	silent	c.3996	p.T1332	0.006	smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	94	0	0	97	11	10.19	-	-	-	A	21427492	G	A	21427492	2	1	341	1	0	0	0	0	0	0	0	1	8661	1103	39	1		1	LAMA3	18	21427492	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	292753	21427492	56649756	731	37290										
CHST9	0	genome.wustl.edu	37	chr18	24497255	24497256	+	In_Frame_Ins	INS	-	-	TGG													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcctagtagatctctcagaaINSttgagtagaagattttcctt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	24497255	24497256	-	TGG	INS	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	in_frame_ins	c.300_299	p.101in_frame_insH	0.000:0.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	202	0	0	36	4	10	-	-	-	TGG	24497256	-	TGG	24497255	7	5	341	1	0	1	1	0	0	0	0	0	3440	98	4	0	1035	0	CHST9	18	24497255	In_Frame_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	3069763	24497255	53579993	732	37291										
DSG3	0	genome.wustl.edu	37	chr18	29054321	29054321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggaaccaataaggactacgCtgatggggcgataagcatga	13	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	29054321	29054321	C	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	missense	c.2339	p.A780V	0.000	prints_Desmoglein	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	179	0	0	167	32	16.08	-	-	-	T	29054321	C	T	29054321	3	4	341	1	0	0	0	0	1	0	0	0	4813	797	28	4	2397	4	DSG3	18	29054321	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4557066	29054321	49022927	733	37292										
FHOD3	0	genome.wustl.edu	37	chr18	34298455	34298455	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccagtgttcaacgctcctcAgggcttagggtggtcccagg	13	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	34298455	34298455	A	G	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.2669	p.Q890R	1.000	superfamily_FH2_actin-bd	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	186	0	0	120	22	15.49	-	-	-	G	34298455	A	G	34298455	3	3	341	1	0	0	0	0	1	0	0	0	5929	188	7	5	2731	5	FHOD3	18	34298455	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	5244134	34298455	43778793	734	37293										
FHOD3	0	genome.wustl.edu	37	chr18	34324133	34324133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgatctgtactcggagatcGgggccatcaccaggtcagcc	12	14	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	34324133	34324133	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.3493	p.G1165R	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	53	0	0	71	15	17.44	-	-	-	A	34324133	G	A	34324133	3	1	341	1	0	0	0	0	1	0	0	0	5929	1116	39	1	3571	1	FHOD3	18	34324133	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	25678	34324133	43753115	735	37294										
SLC14A1	0	genome.wustl.edu	37	chr18	43319182	43319182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tctatggctgtgataatccaTggacagggggcattttcctg	12	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	43319182	43319182	T	C	SNP	SLC14A1	ENST00000415427	human	ensembl	69_37n	1	known	missense	c.886	p.W296R	0.999	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469	166	0	0	47	8	14.55	-	-	-	C	43319182	T	C	43319182	3	2	341	1	0	0	0	0	1	0	0	0	14485	1464	51	5	908	5	SLC14A1	18	43319182	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8995049	43319182	34758066	736	37295										
KIAA1468	0	genome.wustl.edu	37	chr18	59925791	59925791	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggtgatccctcagaaagagTagttagtgctacacatcaag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	59925791	59925791	T	-	DEL	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	frame_shift_del	c.2084	p.V695fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	73	0	0	12	3	20	-	-	-	-	59925791	T	-	59925791	7	5	341	1	0	1	0	1	0	0	0	0	8288	1638	57	0	2142	0	KIAA1468	18	59925791	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	16606609	59925791	18151457	737	37296										
SERPINB3	0	genome.wustl.edu	37	chr18	61324075	61324075	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagttcttaccttctggagaCcatcgatttcatttggcagc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	61324075	61324075	C	-	DEL	SERPINB3	ENST00000283752	human	ensembl	69_37n	-1	known	frame_shift_del	c.758	p.G253fs	0.988	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149	373	0	0	27	3	10	-	-	-	-	61324075	C	-	61324075	7	5	341	1	0	1	0	1	0	0	0	0	14190	507	18	0	422	0	SERPINB3	18	61324075	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	1398284	61324075	16753173	738	37297										
SOCS6	0	genome.wustl.edu	37	chr18	67992730	67992730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tagaccaggacctagttgtcGccccagagatcttcgtggat	11	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	67992730	67992730	G	A	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.826	p.A276T	0.995	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	268	0	0	111	24	17.78	-	-	-	A	67992730	G	A	67992730	3	1	341	1	0	0	0	0	1	0	0	0	15007	1087	38	1	828	1	SOCS6	18	67992730	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	6668655	67992730	10084518	739	37298										
CYB5A	0	genome.wustl.edu	37	chr18	71930610	71930610	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagctccccaatgatgaatgTtttggacatttccctggcat	9	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	71930610	71930610	T	G	SNP	CYB5A	ENST00000340533	human	ensembl	69_37n	-1	known	missense	c.232	p.T78P	0.000	pfam_Cyt_B5,superfamily_Cyt_B5,prints_Cyt_B5,pfscan_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5,prints_Cyt_B5,pfscan_Cyt_B5	-	no_errors	CYB5A	HGNC	ENSG00000166347	150	0	0	42	7	14.29	-	-	-	G	71930610	T	G	71930610	3	3	341	1	0	0	0	0	1	0	0	0	4153	1725	60	5	201	5	CYB5A	18	71930610	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	3937880	71930610	6146638	740	37299										
TSHZ1	0	genome.wustl.edu	37	chr18	73000322	73000322	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aactgcttctacatacataaGtcatttggagacacacttgg	7	9	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	18	73000322	73000322	G	C	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.2960	p.S987T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	190	0	0	227	43	15.87	-	-	-	C	73000322	G	C	73000322	3	2	341	1	0	0	0	0	1	0	0	0	16719	1029	36	4	2827	4	TSHZ1	18	73000322	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1069712	73000322	5076926	741	37300										
PTBP1	0	genome.wustl.edu	37	chr19	808430	808430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacgccctagtgcagatggcGgacggcaaccaggcccagct	13	14	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	808430	808430	G	A	SNP	PTBP1	ENST00000585956	human	ensembl	69_37n	1	novel	missense	c.644	p.R215Q	0.006	smart_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTBP1	HGNC	ENSG00000011304	28	0	0	53	12	18.46	-	-	-	A	808430	G	A	808430	3	1	341	1	0	0	0	0	1	0	0	0	12805	1103	39	1	1270	1	PTBP1	19	808430	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		808430	58320553	742	37301										
LPPR3	0	genome.wustl.edu	37	chr19	814532	814532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgtgagcccgcatacgcccgCggcgatggcaaaggcgaaga	15	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	814532	814532	C	T	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	missense	c.817	p.A273T	0.998	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	131	0	0	183	45	19.74	-	-	-	T	814532	C	T	814532	3	4	341	1	0	0	0	0	1	0	0	0	8992	768	27	1	1431	1	LPPR3	19	814532	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6102	814532	58314451	743	37302										
GRIN3B	0	genome.wustl.edu	37	chr19	1005498	1005498	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacacggccaacctggctgcCgtcatggtcggggacaagac	13	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	1005498	1005498	C	T	SNP	GRIN3B	ENST00000234389	human	ensembl	69_37n	1	known	silent	c.1998	p.A666	0.808	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032	83	0	0	123	18	12.77	-	-	-	T	1005498	C	T	1005498	2	4	341	1	0	0	0	0	0	0	0	1	6835	639	23	1		1	GRIN3B	19	1005498	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	190966	1005498	58123485	744	37303										
APC2	0	genome.wustl.edu	37	chr19	1460266	1460266	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgctgaacctggcgctgcgcCgctacgcgggcatgaccctc	13	17	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	1460266	1460266	C	A	SNP	APC2	ENST00000233607	human	ensembl	69_37n	1	known	missense	c.1390	p.R464S	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	92	0	0	111	41	26.97	-	-	-	A	1460266	C	A	1460266	3	1	341	1	0	0	0	0	1	0	0	0	765	652	23	3	1428	3	APC2	19	1460266	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	454768	1460266	57668717	745	37304										
DOT1L	0	genome.wustl.edu	37	chr19	2202709	2202709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttttgcagtgttatatttGtgaataattttgcctttggt	9	3	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	2202709	2202709	G	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.718	p.V240M	1.000	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	530	1	0.19	644	167	20.54	-	-	-	A	2202709	G	A	2202709	3	1	341	1	0	0	0	0	1	0	0	0	4744	1377	48	4	752	4	DOT1L	19	2202709	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	742443	2202709	56926274	746	37305										
DOT1L	0	genome.wustl.edu	37	chr19	2216367	2216367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgcctgacgacgccctgtccCtgcacctgcgtgggaagggc	14	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	2216367	2216367	C	T	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	silent	c.2011	p.L671	0.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	16	0	0	26	8	23.53	-	-	-	T	2216367	C	T	2216367	2	4	341	1	0	0	0	0	0	0	0	1	4744	680	24	4		4	DOT1L	19	2216367	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	13658	2216367	56912616	747	37306										
ZNF77	0	genome.wustl.edu	37	chr19	2933700	2933700	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcttttgaaagtactgagcGtggctgaaggctttcccaca	11	9	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	2933700	2933700	G	A	SNP	ZNF77	ENST00000314531	human	ensembl	69_37n	-1	known	silent	c.1425	p.H475	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	482	0	0	367	114	23.7	-	-	-	A	2933700	G	A	2933700	2	1	341	1	0	0	0	0	0	0	0	1	18236	1136	40	1		1	ZNF77	19	2933700	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	717333	2933700	56195283	748	37307										
MATK	0	genome.wustl.edu	37	chr19	3778300	3778300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggccagtttgcggaagggtgGccggcgggcgggctctgcct	20	11	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	3778300	3778300	G	A	SNP	MATK	ENST00000395045	human	ensembl	69_37n	-1	known	missense	c.1408	p.P470S	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264	15	0	0	21	10	32.26	-	-	-	A	3778300	G	A	3778300	3	1	341	1	0	0	0	0	1	0	0	0	9403	1203	42	4	122	4	MATK	19	3778300	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	844600	3778300	55350683	749	37308										
ZBTB7A	0	genome.wustl.edu	37	chr19	4055153	4055153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcaggccctgcgtccgctgCtcgttcagcccactcaggat	11	16	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	4055153	4055153	C	T	SNP	ZBTB7A	ENST00000322357	human	ensembl	69_37n	-1	known	silent	c.78	p.E26	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951	44	0	0	59	7	10.45	-	-	-	T	4055153	C	T	4055153	2	4	341	1	0	0	0	0	0	0	0	1	17649	796	28	4		4	ZBTB7A	19	4055153	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	276853	4055153	55073830	750	37309										
TICAM1	0	genome.wustl.edu	37	chr19	4816955	4816955	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acagtctggcgacccctgtcGcgtgaggttgctcatcatgg	13	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	4816955	4816955	G	A	SNP	TICAM1	ENST00000248244	human	ensembl	69_37n	-1	known	nonsense	c.1435	p.R479*	0.005	pirsf_Tol-interleuk_rcpt_adapt_Ticam	superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Ticam	-	no_errors	TICAM1	HGNC	ENSG00000127666	76	0	0	146	25	14.62	-	-	-	A	4816955	G	A	4816955	4	1	341	1	0	0	0	0	0	1	0	0	15987	1095	38	1	707	1	TICAM1	19	4816955	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	761802	4816955	54312028	751	37310										
ZNRF4	0	genome.wustl.edu	37	chr19	5455986	5455986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgggcgccatcgtgctgatcCgccgctacgactgcaccttc	11	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	5455986	5455986	C	T	SNP	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	missense	c.484	p.R162C	0.070	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	25	0	0	34	14	28.57	-	-	-	T	5455986	C	T	5455986	3	4	341	1	0	0	0	0	1	0	0	0	18307	652	23	1	486	1	ZNRF4	19	5455986	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	639031	5455986	53672997	752	37311										
KHSRP	0	genome.wustl.edu	37	chr19	6422382	6422382	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aactgtctcttttggcccccAaaaccaaaatcaggagtgct	7	12	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	6422382	6422382	A	C	SNP	KHSRP	ENST00000398148	human	ensembl	69_37n	-1	known	missense	c.315	p.F105L	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHSRP	HGNC	ENSG00000088247	281	0	0	328	104	23.96	-	-	-	C	6422382	A	C	6422382	3	2	341	1	0	0	0	0	1	0	0	0	8203	127	5	5	1896	5	KHSRP	19	6422382	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	966396	6422382	52706601	753	37312										
MCOLN1	0	genome.wustl.edu	37	chr19	7594494	7594494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agatcctcatcgccacactgCgggtggccctgcccagcgtc	11	17	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	7594494	7594494	C	T	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.1255	p.R419W	1.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	324	0	0	399	129	24.43	-	-	-	T	7594494	C	T	7594494	3	4	341	1	0	0	0	0	1	0	0	0	9466	759	27	1	1297	1	MCOLN1	19	7594494	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1172112	7594494	51534489	754	37313										
MUC16	0	genome.wustl.edu	37	chr19	9028274	9028274	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtaggggcccagctcctggAtgccatttgtcagattgctc	12	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	9028274	9028274	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.36518	p.I12173T	0.005	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	337	0	0	199	23	10.31	-	-	-	G	9028274	A	G	9028274	3	3	341	1	0	0	0	0	1	0	0	0	10045	333	12	5	7301	5	MUC16	19	9028274	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1433780	9028274	50100709	755	37314										
TYK2	0	genome.wustl.edu	37	chr19	10463747	10463747	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggctaggtctcggtggatgtAgtgctgcgcgtgcagatagg	18	7	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	10463747	10463747	A	G	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	missense	c.3055	p.Y1019H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	189	1	0.52	287	42	12.77	-	-	-	G	10463747	A	G	10463747	3	3	341	1	0	0	0	0	1	0	0	0	16907	420	15	5	524	5	TYK2	19	10463747	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1435473	10463747	48665236	756	37315										
SMARCA4	0	genome.wustl.edu	37	chr19	11134234	11134234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaccattctcatcatccggcGtctccacaaagtgctgcggc	8	15	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	11134234	11134234	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	missense	c.2900	p.R967H	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	141	0	0	234	34	12.64	-	-	-	A	11134234	G	A	11134234	3	1	341	1	0	0	0	0	1	0	0	0	14859	1145	40	1	2974	1	SMARCA4	19	11134234	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	670487	11134234	47994749	757	37316										
ELAVL3	0	genome.wustl.edu	37	chr19	11569311	11569311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggatgcgggacgtgatgatgCggccgtactgggagaagagc	19	7	0	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	11569311	11569311	C	T	SNP	ELAVL3	ENST00000359227	human	ensembl	69_37n	-1	known	missense	c.449	p.R150H	0.984	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361	220	0	0	271	40	12.82	-	-	-	T	11569311	C	T	11569311	3	4	341	1	0	0	0	0	1	0	0	0	5088	768	27	1	670	1	ELAVL3	19	11569311	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	435077	11569311	47559672	758	37317										
BEST2	0	genome.wustl.edu	37	chr19	12866252	12866252	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cactatgactggattagcgtAcccctcgtgtacacgcaggt	10	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	12866252	12866252	A	G	SNP	BEST2	ENST00000042931	human	ensembl	69_37n	1	known	silent	c.696	p.V232	0.083	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST2	HGNC	ENSG00000039987	389	1	0.26	508	74	12.67	-	-	-	G	12866252	A	G	12866252	2	3	341	1	0	0	0	0	0	0	0	1	1409	378	14	5		5	BEST2	19	12866252	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1296941	12866252	46262731	759	37318										
HOOK2	0	genome.wustl.edu	37	chr19	12878650	12878650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggcctgggtcaacccccgcGgctgcagctgggcgcagcgc	16	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	12878650	12878650	G	A	SNP	HOOK2	ENST00000397668	human	ensembl	69_37n	-1	known	missense	c.1283	p.P428L	0.798	pfam_HOOK	pfam_HOOK,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066	20	0	0	29	15	34.09	-	-	-	A	12878650	G	A	12878650	3	1	341	1	0	0	0	0	1	0	0	0	7334	1116	39	1	920	1	HOOK2	19	12878650	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	12398	12878650	46250333	760	37319										
MRI1	0	genome.wustl.edu	37	chr19	13882968	13882968	+	Frame_Shift_Del	DEL	C	C	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaatcctgccttcgatgtcaCcccccacgacctcatcactg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	13882968	13882968	C	-	DEL	MRI1	ENST00000040663	human	ensembl	69_37n	1	known	frame_shift_del	c.983	p.H330fs	1.000	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	-	no_errors	MRI1	HGNC	ENSG00000037757	184	0	0	239	36	13	-	-	-	-	13882968	C	-	13882968	7	5	341	1	0	1	0	1	0	0	0	0	9842	507	18	0	1098	0	MRI1	19	13882968	Frame_Shift_Del	DEL	C	TCGA-AO-A128-01A-11D-A10M-09	1004318	13882968	45246015	761	37320										
ZSWIM4	0	genome.wustl.edu	37	chr19	13910714	13910714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acctgctccagagcggggccGtggaccgcgtgttgcaagtg	16	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	13910714	13910714	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.334	p.V112M	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	36	0	0	72	12	14.12	-	-	-	A	13910714	G	A	13910714	3	1	341	1	0	0	0	0	1	0	0	0	18334	1145	40	1	340	1	ZSWIM4	19	13910714	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	27746	13910714	45218269	762	37321										
RFX1	0	genome.wustl.edu	37	chr19	14074749	14074749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgttctgcagcacagcgcgcGccgcctgcgccaggtggttg	15	14	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	14074749	14074749	G	A	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	missense	c.2282	p.A761V	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	86	0	0	102	40	28.17	-	-	-	A	14074749	G	A	14074749	3	1	341	1	0	0	0	0	1	0	0	0	13345	1087	38	1	677	1	RFX1	19	14074749	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	164035	14074749	45054234	763	37322										
ASF1B	0	genome.wustl.edu	37	chr19	14231277	14231277	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgggttcctgcagttagatGcagtccatggagttctcagg	13	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	14231277	14231277	G	A	SNP	ASF1B	ENST00000263382	human	ensembl	69_37n	-1	known	silent	c.603	p.C201	1.000	NULL	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1B	HGNC	ENSG00000105011	115	0	0	159	26	13.98	-	-	-	A	14231277	G	A	14231277	2	1	341	1	0	0	0	0	0	0	0	1	1042	1311	46	4		4	ASF1B	19	14231277	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	156528	14231277	44897706	764	37323										
ZNF333	0	genome.wustl.edu	37	chr19	14805938	14805938	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaccagtgcaggaccctggcCtccaggggtaaggctggcgt	16	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	14805938	14805938	C	A	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	silent	c.120	p.A40	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	198	0	0	198	28	12.39	-	-	-	A	14805938	C	A	14805938	2	1	341	1	0	0	0	0	0	0	0	1	17946	668	24	4		4	ZNF333	19	14805938	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	574661	14805938	44323045	765	37324										
SLC1A6	0	genome.wustl.edu	37	chr19	15082642	15082642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagaagtacttgatctggcGgtaggtgagctgatatgggc	16	5	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	15082642	15082642	G	T	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.250	p.R84S	0.999	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	235	0	0	276	34	10.97	-	-	-	T	15082642	G	T	15082642	3	4	341	1	0	0	0	0	1	0	0	0	14525	1116	39	3	1476	3	SLC1A6	19	15082642	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	276704	15082642	44046341	766	37325										
CYP4F12	0	genome.wustl.edu	37	chr19	15791295	15791295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caacatcctgaagtcctataTaacgatcttcaacaagagtg	6	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	15791295	15791295	T	C	SNP	CYP4F12	ENST00000324632	human	ensembl	69_37n	1	known	missense	c.491	p.I164T	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204	132	0	0	133	16	10.74	-	-	-	C	15791295	T	C	15791295	3	2	341	1	0	0	0	0	1	0	0	0	4218	1406	49	5	505	5	CYP4F12	19	15791295	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	708653	15791295	43337688	767	37326										
OR10H4	0	genome.wustl.edu	37	chr19	16060449	16060449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgtgtcacagccctgatagGctgtttattcctcatcatcc	8	12	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	16060449	16060449	G	A	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	missense	c.632	p.G211D	0.168	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	687	1	0.14	130	51	27.87	-	-	-	A	16060449	G	A	16060449	3	1	341	1	0	0	0	0	1	0	0	0	10981	1203	42	4	634	4	OR10H4	19	16060449	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	269154	16060449	43068534	768	37327										
C19orf44	0	genome.wustl.edu	37	chr19	16617587	16617587	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctccgatttggaacaggaagTaagtacaacaaagtcatttt	8	7	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	16617587	16617587	T	C	SNP	C19orf44	ENST00000221671	human	ensembl	69_37n	1	known	splice_site	c.1149+2	e3+2	0.981	-	-	-	no_errors	C19orf44	HGNC	ENSG00000105072	72	0	0	61	12	16.44	-	-	-	C	16617587	T	C	16617587	5	2	341	1	0	0	0	0	0	0	1	0	1945	1652	57	5	1161	5	C19orf44	19	16617587	Splice_Site	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	557138	16617587	42511396	769	37328										
USHBP1	0	genome.wustl.edu	37	chr19	17373491	17373491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cggccaggcgagctgcctctCgctggcagctccctgcccct	12	19	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	17373491	17373491	C	T	SNP	USHBP1	ENST00000252597	human	ensembl	69_37n	-1	known	missense	c.512	p.R171Q	0.656	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	99	0	0	161	18	10.06	-	-	-	T	17373491	C	T	17373491	3	4	341	1	0	0	0	0	1	0	0	0	17134	884	31	1	1639	1	USHBP1	19	17373491	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	755904	17373491	41755492	770	37329										
UNC13A	0	genome.wustl.edu	37	chr19	17767000	17767000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggaagtcctccaggtcctcCtccagctcttcctcatcctg	7	17	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	17767000	17767000	C	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.1239	p.E413D	0.265	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	142	0	0	174	28	13.73	-	-	-	A	17767000	C	A	17767000	3	1	341	1	0	0	0	0	1	0	0	0	17081	680	24	4	4268	4	UNC13A	19	17767000	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	393509	17767000	41361983	771	37330										
ARMC6	0	genome.wustl.edu	37	chr19	19166169	19166169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gctggtgggacggagtccatCgtggctgctatgacccagca	15	11	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	19166169	19166169	C	T	SNP	ARMC6	ENST00000535795	human	ensembl	69_37n	1	putative	missense	c.109	p.R37C	0.957	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARMC6	HGNC	ENSG00000105676	143	0	0	147	24	14.04	-	-	-	T	19166169	C	T	19166169	3	4	341	1	0	0	0	0	1	0	0	0	959	874	31	1	1062	1	ARMC6	19	19166169	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1399169	19166169	39962814	772	37331										
HAPLN4	0	genome.wustl.edu	37	chr19	19369471	19369471	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggccgccgcagggctcccgGggccggttcacggggtattg	18	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	19369471	19369471	G	T	SNP	HAPLN4	ENST00000291481	human	ensembl	69_37n	-1	known	silent	c.678	p.P226	0.993	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664	18	0	0	42	9	17.65	-	-	-	T	19369471	G	T	19369471	2	4	341	1	0	0	0	0	0	0	0	1	7008	1219	43	4		4	HAPLN4	19	19369471	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	203302	19369471	39759512	773	37332										
ZNF486	0	genome.wustl.edu	37	chr19	20308650	20308650	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	attcatactggagagaaaccAtacaaatgtgaagaatgtgg	10	5	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	20308650	20308650	A	T	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	silent	c.1131	p.P377	0.883	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	27	0	0	19	4	17.39	-	-	-	T	20308650	A	T	20308650	2	4	341	1	0	0	0	0	0	0	0	1	18035	204	8	5		5	ZNF486	19	20308650	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	939179	20308650	38820333	774	37333										
ZNF626	0	genome.wustl.edu	37	chr19	20807622	20807622	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcttatgtgtagtaagggtaGaggagtacttaaaggctttg	13	3	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	20807622	20807622	G	T	SNP	ZNF626	ENST00000305570	human	ensembl	69_37n	-1	known	missense	c.1061	p.S354Y	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	129	1	0.77	52	8	13.33	-	-	-	T	20807622	G	T	20807622	3	4	341	1	0	0	0	0	1	0	0	0	18146	942	33	2	529	2	ZNF626	19	20807622	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	498972	20807622	38321361	775	37334										
ZNF99	0	genome.wustl.edu	37	chr19	22941129	22941129	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctttccagtatgaattatctTatgttttctaagggctgaga	8	6	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	22941129	22941129	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1309	p.K437E	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	28	0	0	11	8	42.11	-	-	-	C	22941129	T	C	22941129	3	2	341	1	0	0	0	0	1	0	0	0	18297	1763	61	5	1815	5	ZNF99	19	22941129	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2133507	22941129	36187854	776	37335										
ZNF675	0	genome.wustl.edu	37	chr19	23836448	23836448	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatcggttaaaagctttgccAcattcttcacatttgtaggg	9	8	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	23836448	23836448	A	G	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	silent	c.1287	p.C429	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	44	0	0	20	4	16.67	-	-	-	G	23836448	A	G	23836448	2	3	341	1	0	0	0	0	0	0	0	1	18178	157	6	5		5	ZNF675	19	23836448	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	895319	23836448	35292535	777	37336										
ZNF681	0	genome.wustl.edu	37	chr19	23927314	23927314	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggtgtgaggactggttaaaGgctttgccacattcttcaca	11	8	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	23927314	23927314	G	A	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	silent	c.1038	p.A346	0.032	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	128	0	0	57	10	14.93	-	-	-	A	23927314	G	A	23927314	2	1	341	1	0	0	0	0	0	0	0	1	18184	987	35	4		4	ZNF681	19	23927314	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	90866	23927314	35201669	778	37337										
ZNF536	0	genome.wustl.edu	37	chr19	30934485	30934485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagggatggaagaagcgagcCtgtgccttggagtgtcttcg	16	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	30934485	30934485	C	A	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.16	p.L6M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	53	0	0	67	9	11.69	-	-	-	A	30934485	C	A	30934485	3	1	341	1	0	0	0	0	1	0	0	0	18070	680	24	4	18	4	ZNF536	19	30934485	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	7007171	30934485	28194498	779	37338										
SLC7A9	0	genome.wustl.edu	37	chr19	33353088	33353088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggctcccacagacagctgggCgccctcgaaagaattatcaa	10	13	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	33353088	33353088	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	missense	c.640	p.A214T	0.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	74	0	0	114	26	18.57	-	-	-	T	33353088	C	T	33353088	3	4	341	1	0	0	0	0	1	0	0	0	14794	768	27	1	855	1	SLC7A9	19	33353088	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2418603	33353088	25775895	780	37339										
WDR88	0	genome.wustl.edu	37	chr19	33655137	33655137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtgatggatgttgccattaGcaacaacaagaaatggatcc	11	7	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	33655137	33655137	G	A	SNP	WDR88	ENST00000355868	human	ensembl	69_37n	1	known	missense	c.1115	p.S372N	0.980	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359	376	0	0	154	32	17.2	-	-	-	A	33655137	G	A	33655137	3	1	341	1	0	0	0	0	1	0	0	0	17432	971	34	4	1149	4	WDR88	19	33655137	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	302049	33655137	25473846	781	37340										
ZNF181	0	genome.wustl.edu	37	chr19	35232519	35232519	+	Silent	SNP	G	G	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tatgaatgcaacaaatgtctGaaagtctttagtagcctctc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	35232519	35232519	G	C	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	silent	c.1233	p.L411	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	89	0	0	46	8	14.81	-	-	-	C	35232519	G	C	35232519	2	2	341	1	0	0	0	0	0	0	0	1	17845	1277	45	2		2	ZNF181	19	35232519	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1577382	35232519	23896464	782	37341	306	2								
ZNF181	0	genome.wustl.edu	37	chr19	35232522	35232522	+	Silent	SNP	A	A	G													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaatgcaacaaatgtctgaaAgtctttagtagcctctcatt							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	35232522	35232522	A	G	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	silent	c.1236	p.K412	0.861	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	87	0	0	42	8	16	-	-	-	G	35232522	A	G	35232522	2	3	341	1	0	0	0	0	0	0	0	1	17845	69	3	5		5	ZNF181	19	35232522	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3	35232522	23896461	783	37342	306	2								
MAG	0	genome.wustl.edu	37	chr19	35793353	35793353	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccgtcctaccccgcagatGcaccctggaagccaacagtg	9	17	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	35793353	35793353	G	A	SNP	MAG	ENST00000392213	human	ensembl	69_37n	1	known	missense	c.973	p.A325T	1.000	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MAG	HGNC	ENSG00000105695	154	0	0	163	24	12.83	-	-	-	A	35793353	G	A	35793353	3	1	341	1	0	0	0	0	1	0	0	0	9229	1319	46	4	991	4	MAG	19	35793353	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	560831	35793353	23335630	784	37343										
KIRREL2	0	genome.wustl.edu	37	chr19	36357320	36357320	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttgggcccccagatctgGcccccgggactccccccttc	9	21	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	36357320	36357320	G	C	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	missense	c.2053	p.A685P	0.458	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	89	0	0	180	24	11.71	-	-	-	C	36357320	G	C	36357320	3	2	341	1	0	0	0	0	1	0	0	0	8378	1203	42	4	2111	4	KIRREL2	19	36357320	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	563967	36357320	22771663	785	37344										
ZNF567	0	genome.wustl.edu	37	chr19	37211028	37211028	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agacaacccttgtagcacatCagagaacacatacaggggag	10	10	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	37211028	37211028	C	G	SNP	ZNF567	ENST00000536254	human	ensembl	69_37n	1	known	missense	c.1402	p.Q468E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042	107	0	0	25	9	26.47	-	-	-	G	37211028	C	G	37211028	3	3	341	1	0	0	0	0	1	0	0	0	18094	827	29	2	1319	2	ZNF567	19	37211028	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	853708	37211028	21917955	786	37345										
ZNF567	0	genome.wustl.edu	37	chr19	37211190	37211190	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtcaaaagacaaatctcaatCtacatcagagaattcataca	4	9	5	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	37211190	37211190	C	G	SNP	ZNF567	ENST00000536254	human	ensembl	69_37n	1	known	missense	c.1564	p.L522V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042	92	0	0	24	5	17.24	-	-	-	G	37211190	C	G	37211190	3	3	341	1	0	0	0	0	1	0	0	0	18094	912	32	2	1481	2	ZNF567	19	37211190	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	162	37211190	21917793	787	37346										
ZNF540	0	genome.wustl.edu	37	chr19	38103537	38103537	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaagcctttatgcttcgttcAgtccttactgaacatcagag	7	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	38103537	38103537	A	G	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	silent	c.1356	p.S452	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	154	0	0	60	7	10.45	-	-	-	G	38103537	A	G	38103537	2	3	341	1	0	0	0	0	0	0	0	1	18071	175	7	5		5	ZNF540	19	38103537	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	892347	38103537	21025446	788	37347										
RYR1	0	genome.wustl.edu	37	chr19	38954467	38954467	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgagaggaactacaacctGcagatgtctggggagacgct	13	10	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	38954467	38954467	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.2763	p.L921	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	27	0	0	56	23	29.11	-	-	-	A	38954467	G	A	38954467	2	1	341	1	0	0	0	0	0	0	0	1	13854	1306	46	4		4	RYR1	19	38954467	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	850930	38954467	20174516	789	37348										
RYR1	0	genome.wustl.edu	37	chr19	38954484	38954484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgcagatgtctggggagaCgctcaagtgagggcccaggg	17	10	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	38954484	38954484	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2780	p.T927M	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	26	0	0	56	7	11.11	-	-	-	T	38954484	C	T	38954484	3	4	341	1	0	0	0	0	1	0	0	0	13854	536	19	1	2866	1	RYR1	19	38954484	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	17	38954484	20174499	790	37349										
GMFG	0	genome.wustl.edu	37	chr19	39826172	39826172	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacaccaccagggagtcagaCtgccggagggacccaggaag	14	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	39826172	39826172	C	T	SNP	GMFG	ENST00000253054	human	ensembl	69_37n	-1	known	splice_site	c.4-1	e2-1	1.000	-	-	-	no_errors	GMFG	HGNC	ENSG00000130755	62	0	0	99	13	11.61	-	-	-	T	39826172	C	T	39826172	5	4	341	1	0	0	0	0	0	0	1	0	6542	579	20	4	449	4	GMFG	19	39826172	Splice_Site	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	871688	39826172	19302811	791	37350										
PAF1	0	genome.wustl.edu	37	chr19	39877359	39877359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttccagttccttctcattcAtgtcccgatgtttgaccaca	5	14	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	39877359	39877359	A	G	SNP	PAF1	ENST00000221265	human	ensembl	69_37n	-1	known	missense	c.1067	p.M356T	1.000	pfam_RNA_pol_II-assoc_Paf1	pfam_RNA_pol_II-assoc_Paf1	-	no_errors	PAF1	HGNC	ENSG00000006712	334	0	0	418	103	19.77	-	-	-	G	39877359	A	G	39877359	3	3	341	1	0	0	0	0	1	0	0	0	11456	217	8	5	540	5	PAF1	19	39877359	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	51187	39877359	19251624	792	37351										
PLEKHG2	0	genome.wustl.edu	37	chr19	39914677	39914677	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgcacctccaggtgccggcTcttacaactttctctgatca	7	15	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	39914677	39914677	T	G	SNP	PLEKHG2	ENST00000205135	human	ensembl	69_37n	1	putative	missense	c.2507	p.L836R	0.086	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLEKHG2	HGNC	ENSG00000090924	62	0	0	150	23	13.29	-	-	-	G	39914677	T	G	39914677	3	3	341	1	0	0	0	0	1	0	0	0	12143	1538	54	5	2974	5	PLEKHG2	19	39914677	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	37318	39914677	19214306	793	37352										
TIMM50	0	genome.wustl.edu	37	chr19	39971352	39971352	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctagtcagaagcaaacgcgcCtgcggcaatccgcccgatgc	11	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	39971352	39971352	C	A	SNP	TIMM50	ENST00000314349	human	ensembl	69_37n	1	known	silent	c.168	p.A56	0.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197	75	0	0	153	30	16.39	-	-	-	A	39971352	C	A	39971352	2	1	341	1	0	0	0	0	0	0	0	1	16008	668	24	4		4	TIMM50	19	39971352	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	56675	39971352	19157631	794	37353										
DLL3	0	genome.wustl.edu	37	chr19	39995902	39995902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttgaatgcacctgcccgCgtgggttctacgggctgcgg	14	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	39995902	39995902	C	T	SNP	DLL3	ENST00000205143	human	ensembl	69_37n	1	known	missense	c.904	p.R302C	0.982	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DLL3	HGNC	ENSG00000090932	355	0	0	391	190	32.65	-	-	-	T	39995902	C	T	39995902	3	4	341	1	0	0	0	0	1	0	0	0	4603	768	27	1	926	1	DLL3	19	39995902	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	24550	39995902	19133081	795	37354										
ZNF575	0	genome.wustl.edu	37	chr19	44039689	44039689	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccaagctggccgcccatcgCctatgtcacgaccccccaac	7	20	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	44039689	44039689	C	T	SNP	ZNF575	ENST00000458714	human	ensembl	69_37n	1	known	silent	c.885	p.R295	0.883	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF575	HGNC	ENSG00000176472	64	0	0	114	21	15.56	-	-	-	T	44039689	C	T	44039689	2	4	341	1	0	0	0	0	0	0	0	1	18103	726	26	4		4	ZNF575	19	44039689	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4043787	44039689	15089294	796	37355										
ZNF235	0	genome.wustl.edu	37	chr19	44792637	44792637	+	Frame_Shift_Del	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cattcatgacaccaatagcgTtttttcccagtacgaacact							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	44792637	44792637	T	-	DEL	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	frame_shift_del	c.951	p.K317fs	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	159	0	0	24	5	17.24	-	-	-	-	44792637	T	-	44792637	7	5	341	1	0	1	0	1	0	0	0	0	17884	1722	60	0	1269	0	ZNF235	19	44792637	Frame_Shift_Del	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	752948	44792637	14336346	797	37356										
ZFP112	0	genome.wustl.edu	37	chr19	44832281	44832281	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcccgtgtggaccctctgatGggccaaaagtgttgaggcct	13	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	44832281	44832281	G	T	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	missense	c.2098	p.H700N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	112	0	0	15	7	31.82	-	-	-	T	44832281	G	T	44832281	3	4	341	1	0	0	0	0	1	0	0	0	17734	1348	47	4	698	4	ZFP112	19	44832281	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	39644	44832281	14296702	798	37357										
PPP1R13L	0	genome.wustl.edu	37	chr19	45889119	45889119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggagttgacattggcacccgCggtgatgaggaaatccacga	14	9	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	45889119	45889119	C	T	SNP	PPP1R13L	ENST00000360957	human	ensembl	69_37n	-1	known	missense	c.2044	p.A682T	0.007	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881	112	0	0	216	27	11.02	-	-	-	T	45889119	C	T	45889119	3	4	341	1	0	0	0	0	1	0	0	0	12435	768	27	1	458	1	PPP1R13L	19	45889119	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1056838	45889119	13239864	799	37358										
GPR4	0	genome.wustl.edu	37	chr19	46094966	46094966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctgaggttcatcaggtagacGcccagctcgttgcgctgttg	13	11	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	46094966	46094966	G	A	SNP	GPR4	ENST00000323040	human	ensembl	69_37n	-1	known	silent	c.159	p.G53	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Psych_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_GPR4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464	82	0	0	108	56	34.15	-	-	-	A	46094966	G	A	46094966	2	1	341	1	0	0	0	0	0	0	0	1	6744	1074	38	1		1	GPR4	19	46094966	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	205847	46094966	13034017	800	37359										
SNRPD2	0	genome.wustl.edu	37	chr19	46191653	46191653	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccagcactcacctatcgaaGgccttcacgcggcccaggag	10	17	2	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	46191653	46191653	G	T	SNP	SNRPD2	ENST00000342669	human	ensembl	69_37n	-1	known	silent	c.174	p.A58	0.998	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD2	HGNC	ENSG00000125743	240	1	0.41	417	53	11.25	-	-	-	T	46191653	G	T	46191653	2	4	341	1	0	0	0	0	0	0	0	1	14954	987	35	4		4	SNRPD2	19	46191653	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	96687	46191653	12937330	801	37360										
DHX34	0	genome.wustl.edu	37	chr19	47883015	47883015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acaccaatggtgactgctccCgcctggtggccgatggctgg	14	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	47883015	47883015	C	T	SNP	DHX34	ENST00000328771	human	ensembl	69_37n	1	known	missense	c.2755	p.R919C	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815	56	0	0	104	13	11.02	-	-	-	T	47883015	C	T	47883015	3	4	341	1	0	0	0	0	1	0	0	0	4543	652	23	1	2805	1	DHX34	19	47883015	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1691362	47883015	11245968	802	37361										
CCDC114	0	genome.wustl.edu	37	chr19	48814878	48814878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcagatccagctcctcccGcagggccgcattccgtacca	9	18	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	48814878	48814878	G	A	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	missense	c.418	p.R140W	0.997	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	302	0	0	227	117	34.01	-	-	-	A	48814878	G	A	48814878	3	1	341	1	0	0	0	0	1	0	0	0	2776	1086	38	1	1634	1	CCDC114	19	48814878	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	931863	48814878	10314105	803	37362										
GRIN2D	0	genome.wustl.edu	37	chr19	48917792	48917792	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagaccctatcagcggcaccTgcatccgagactccgtcccc	8	19	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	48917792	48917792	T	C	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	missense	c.1363	p.C455R	1.000	smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	102	0	0	180	22	10.89	-	-	-	C	48917792	T	C	48917792	3	2	341	1	0	0	0	0	1	0	0	0	6833	1580	55	5	1377	5	GRIN2D	19	48917792	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	102914	48917792	10211191	804	37363										
FCGRT	0	genome.wustl.edu	37	chr19	50027779	50027779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcagagcccccctccatgcGcctgaaggcccgacccagca	10	19	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	50027779	50027779	G	A	SNP	FCGRT	ENST00000221466	human	ensembl	69_37n	1	known	missense	c.617	p.R206H	1.000	pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	FCGRT	HGNC	ENSG00000104870	55	0	0	122	23	15.86	-	-	-	A	50027779	G	A	50027779	3	1	341	1	0	0	0	0	1	0	0	0	5832	1087	38	1	631	1	FCGRT	19	50027779	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1109987	50027779	9101204	805	37364										
RRAS	0	genome.wustl.edu	37	chr19	50139933	50139933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacacaacggggaagtcgtcGcggtccttgacccgcagaat	12	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	50139933	50139933	G	A	SNP	RRAS	ENST00000246792	human	ensembl	69_37n	-1	known	silent	c.396	p.R132	0.449	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS	HGNC	ENSG00000126458	83	0	0	86	46	34.85	-	-	-	A	50139933	G	A	50139933	2	1	341	1	0	0	0	0	0	0	0	1	13762	1074	38	1		1	RRAS	19	50139933	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	112154	50139933	8989050	806	37365										
MYH14	0	genome.wustl.edu	37	chr19	50752377	50752377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgggcatcctggacatcgCgggctttgagatcttccagg	13	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	50752377	50752377	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.1463	p.A488V	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	40	0	0	72	12	14.29	-	-	-	T	50752377	C	T	50752377	3	4	341	1	0	0	0	0	1	0	0	0	10105	768	27	1	1509	1	MYH14	19	50752377	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	612444	50752377	8376606	807	37366										
SHANK1	0	genome.wustl.edu	37	chr19	51207712	51207712	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acctggaagggggtctgtccGttgttgttcttcacatcctt	11	10	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	51207712	51207712	G	C	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.1137	p.N379K	0.347	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	126	0	0	175	22	11.11	-	-	-	C	51207712	G	C	51207712	3	2	341	1	0	0	0	0	1	0	0	0	14353	1136	40	3	5412	3	SHANK1	19	51207712	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	455335	51207712	7921271	808	37367										
ZNF615	0	genome.wustl.edu	37	chr19	52496873	52496874	+	Frame_Shift_Del	DEL	AT	AT	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccttttccacaatcattgcAtatatatggcttctctgcag							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	52496873	52496874	AT	-	DEL	ZNF615	ENST00000391795	human	ensembl	69_37n	-1	known	frame_shift_del	c.1471_1470	p.I490fs	0.917:0.027	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619	409	0	0	141	28	16.28	-	-	-	-	52496874	AT	-	52496873	7	5	341	1	0	1	0	1	0	0	0	0	18136	217	8	0	743	0	ZNF615	19	52496873	Frame_Shift_Del	DEL	AT	TCGA-AO-A128-01A-11D-A10M-09	1289161	52496873	6632110	809	37368										
PPP2R1A	0	genome.wustl.edu	37	chr19	52693367	52693367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagatggcggcggccgacggCgacgactcgctgtaccccat	14	14	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	52693367	52693367	C	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	69_37n	1	known	silent	c.18	p.G6	0.999	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	73	0	0	72	9	11.11	-	-	-	T	52693367	C	T	52693367	2	4	341	1	0	0	0	0	0	0	0	1	12459	755	27	1		1	PPP2R1A	19	52693367	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	196494	52693367	6435616	810	37369										
MYADM	0	genome.wustl.edu	37	chr19	54377506	54377506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccttccccagcttcctgtcGgggctggccttgctgtctgt	11	16	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	54377506	54377506	G	A	SNP	MYADM	ENST00000336967	human	ensembl	69_37n	1	known	silent	c.723	p.S241	0.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	MYADM	HGNC	ENSG00000179820	200	0	0	350	50	12.47	-	-	-	A	54377506	G	A	54377506	2	1	341	1	0	0	0	0	0	0	0	1	10078	1103	39	1		1	MYADM	19	54377506	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1684139	54377506	4751477	811	37370										
LENG8	0	genome.wustl.edu	37	chr19	54969606	54969606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcaactaccaccgctttttcCggctctactgccatgcaccc	6	18	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	54969606	54969606	C	T	SNP	LENG8	ENST00000326764	human	ensembl	69_37n	1	known	missense	c.2146	p.R716W	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615	200	0	0	263	35	11.74	-	-	-	T	54969606	C	T	54969606	3	4	341	1	0	0	0	0	1	0	0	0	8778	643	23	1	2200	1	LENG8	19	54969606	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	592100	54969606	4159377	812	37371										
TMEM190	0	genome.wustl.edu	37	chr19	55889413	55889413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgtgtgacatgtccaagtccGtctcgctgctctccaagcac	9	15	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	55889413	55889413	G	A	SNP	TMEM190	ENST00000291934	human	ensembl	69_37n	1	known	missense	c.376	p.V126I	0.133	NULL	superfamily_P_trefoil	-	no_errors	TMEM190	HGNC	ENSG00000160472	36	0	0	89	16	15.09	-	-	-	A	55889413	G	A	55889413	3	1	341	1	0	0	0	0	1	0	0	0	16209	1145	40	1	394	1	TMEM190	19	55889413	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	919807	55889413	3239570	813	37372										
ZNF628	0	genome.wustl.edu	37	chr19	55995297	55995297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccggggaggcgggggatggcGaggccagcactggtgtggtc	22	9	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	55995297	55995297	G	A	SNP	ZNF628	ENST00000391718	human	ensembl	69_37n	1	known	missense	c.2725	p.E909K	0.489	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483	54	0	0	81	25	23.58	-	-	-	A	55995297	G	A	55995297	3	1	341	1	0	0	0	0	1	0	0	0	18148	1059	37	1	2727	1	ZNF628	19	55995297	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	105884	55995297	3133686	814	37373										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56736149	56736149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggagatcatgaactgctcCatcaccagcatgtccaggat	9	11	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	56736149	56736149	C	T	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.267	p.M89I	0.359	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	55	0	0	60	7	10.45	-	-	-	T	56736149	C	T	56736149	3	4	341	1	0	0	0	0	1	0	0	0	18329	594	21	4	1239	4	ZSCAN5A	19	56736149	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	740852	56736149	2392834	815	37374										
ZNF71	0	genome.wustl.edu	37	chr19	57133465	57133465	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacaccggggagaagccgtaCgtgtgccccgagtgcgggcg	17	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	57133465	57133465	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	69_37n	1	known	silent	c.810	p.Y270	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	130	0	0	193	44	18.57	-	-	-	T	57133465	C	T	57133465	2	4	341	1	0	0	0	0	0	0	0	1	18210	547	19	1		1	ZNF71	19	57133465	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	397316	57133465	1995518	816	37375										
ZNF805	0	genome.wustl.edu	37	chr19	57765022	57765022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacaccttacccagcaccagCggattcacagtggagagaag	10	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	57765022	57765022	C	T	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	missense	c.835	p.R279W	0.364	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	188	1	0.53	50	21	29.58	-	-	-	T	57765022	C	T	57765022	3	4	341	1	0	0	0	0	1	0	0	0	18265	759	27	1	849	1	ZNF805	19	57765022	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	631557	57765022	1363961	817	37376										
ZNF814	0	genome.wustl.edu	37	chr19	58384385	58384385	+	Silent	SNP	T	T	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttttctccagtgtgaactctTttgtgttttgtgaaactgga							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	58384385	58384385	T	C	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	silent	c.2373	p.K791	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	147	0	0	63	8	11.27	-	-	-	C	58384385	T	C	58384385	2	2	341	1	0	0	0	0	0	0	0	1	18269	1838	64	5		5	ZNF814	19	58384385	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	619363	58384385	744598	818	37377	307	2								
ZNF814	0	genome.wustl.edu	37	chr19	58384394	58384394	+	Silent	SNP	T	T	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgtgaactcttttgtgtttTgtgaaactggagctttcagc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	58384394	58384394	T	A	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	silent	c.2364	p.T788	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	142	0	0	60	8	11.59	-	-	-	A	58384394	T	A	58384394	2	1	341	1	0	0	0	0	0	0	0	1	18269	1799	63	5		5	ZNF814	19	58384394	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	9	58384394	744589	819	37378	307	2								
C19orf18	0	genome.wustl.edu	37	chr19	58485513	58485513	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atcccaggcaactgggttttAtgaaagaacactttgggctc	10	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	19	58485513	58485513	A	G	SNP	C19orf18	ENST00000314391	human	ensembl	69_37n	-1	known	silent	c.180	p.H60	0.000	NULL	NULL	-	no_errors	C19orf18	HGNC	ENSG00000177025	304	0	0	161	23	12.43	-	-	-	G	58485513	A	G	58485513	2	3	341	1	0	0	0	0	0	0	0	1	1928	446	16	5		5	C19orf18	19	58485513	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	101119	58485513	643470	820	37379										
DEFB125	0	genome.wustl.edu	37	chr20	77029	77031	+	In_Frame_Del	DEL	CCT	CCT	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttccgagactatgccaccaCcttctcagacagctcttact							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	77029	77031	CCT	-	DEL	DEFB125	ENST00000382410	human	ensembl	69_37n	1	known	in_frame_del	c.442_444	p.P148in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	DEFB125	HGNC	ENSG00000178591	150	0	0	60	8	11.76	-	-	-	-	77031	CCT	-	77029	7	5	341	1	0	1	0	1	0	0	0	0	4446	507	18	0	448	0	DEFB125	20	77029	In_Frame_Del	DEL	CCT	TCGA-AO-A128-01A-11D-A10M-09		77029	62948491	821	37380										
NRSN2	0	genome.wustl.edu	37	chr20	330451	330451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tccggtcctgtgcccccgccGgccctggccctcactgtgtt	11	19	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	330451	330451	G	A	SNP	NRSN2	ENST00000382285	human	ensembl	69_37n	1	known	missense	c.164	p.R55Q	0.000	NULL	NULL	-	no_errors	NRSN2	HGNC	ENSG00000125841	69	0	0	92	13	12.26	-	-	-	A	330451	G	A	330451	3	1	341	1	0	0	0	0	1	0	0	0	10736	1116	39	1	166	1	NRSN2	20	330451	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	253422	330451	62695069	822	37381										
TGM3	0	genome.wustl.edu	37	chr20	2320545	2320545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcctgtgaacgtgcagatgCtcttctccaatccactggat	9	12	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	2320545	2320545	C	T	SNP	TGM3	ENST00000381458	human	ensembl	69_37n	1	known	missense	c.1846	p.L616F	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780	404	0	0	188	66	25.98	-	-	-	T	2320545	C	T	2320545	3	4	341	1	0	0	0	0	1	0	0	0	15926	797	28	4	1892	4	TGM3	20	2320545	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1990094	2320545	60704975	823	37382										
VPS16	0	genome.wustl.edu	37	chr20	2842330	2842330	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggcggctgatggtggtgggCgatgcacccgagagcatcca	17	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	2842330	2842330	C	T	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	silent	c.879	p.G293	0.531	pfam_Vps16_N,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	312	2	0.64	252	35	12.11	-	-	-	T	2842330	C	T	2842330	2	4	341	1	0	0	0	0	0	0	0	1	17290	755	27	1		1	VPS16	20	2842330	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	521785	2842330	60183190	824	37383										
SLC4A11	0	genome.wustl.edu	37	chr20	3214190	3214190	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggggccagcaccaggatgacGaaccgaacctcacaggaatt	12	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	3214190	3214190	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	silent	c.828	p.F276	0.870	pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	165	0	0	226	48	17.52	-	-	-	A	3214190	G	A	3214190	2	1	341	1	0	0	0	0	0	0	0	1	14741	1049	37	1		1	SLC4A11	20	3214190	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	371860	3214190	59811330	825	37384										
SIGLEC1	0	genome.wustl.edu	37	chr20	3682158	3682158	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcactgtccccggaggtggaGgccaggatatgacccccatg	13	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	3682158	3682158	G	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.1359	p.A453	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	48	0	0	114	14	10.94	-	-	-	T	3682158	G	T	3682158	2	4	341	1	0	0	0	0	0	0	0	1	14394	987	35	4		4	SIGLEC1	20	3682158	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	467968	3682158	59343362	826	37385										
SEL1L2	0	genome.wustl.edu	37	chr20	13894486	13894486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catataattggatagctgctGttatattttgcacgccaaaa	7	7	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	13894486	13894486	G	A	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	missense	c.491	p.T164I	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	108	0	0	26	5	16.13	-	-	-	A	13894486	G	A	13894486	3	1	341	1	0	0	0	0	1	0	0	0	14099	1377	48	4	1639	4	SEL1L2	20	13894486	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	10212328	13894486	49131034	827	37386										
OVOL2	0	genome.wustl.edu	37	chr20	18005359	18005359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgccctgcagaagggctgccAgttttttagatgtctttttg	11	8	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	18005359	18005359	A	G	SNP	OVOL2	ENST00000278780	human	ensembl	69_37n	-1	known	missense	c.749	p.L250P	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL2	HGNC	ENSG00000125850	364	2	0.55	218	25	10.25	-	-	-	G	18005359	A	G	18005359	3	3	341	1	0	0	0	0	1	0	0	0	11400	188	7	5	82	5	OVOL2	20	18005359	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4110873	18005359	45020161	828	37387										
CRNKL1	0	genome.wustl.edu	37	chr20	20019010	20019010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taccttgacatgctgcgtccGttgaagcaaccgccggtaaa	10	12	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	20019010	20019010	G	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.2113	p.R705W	0.977	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	135	0	0	26	4	13.33	-	-	-	A	20019010	G	A	20019010	3	1	341	1	0	0	0	0	1	0	0	0	3921	1144	40	1	445	1	CRNKL1	20	20019010	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2013651	20019010	43006510	829	37388										
RALGAPA2	0	genome.wustl.edu	37	chr20	20493470	20493470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtcaagaacatcatccccctCctcaacttgagaagagtctt	6	13	4	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	20493470	20493470	C	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.4543	p.E1515K	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	186	0	0	51	12	19.05	-	-	-	T	20493470	C	T	20493470	3	4	341	1	0	0	0	0	1	0	0	0	13097	864	30	2	1110	2	RALGAPA2	20	20493470	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	474460	20493470	42532050	830	37389										
RALGAPA2	0	genome.wustl.edu	37	chr20	20620529	20620530	+	Frame_Shift_Ins	INS	-	-	A													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taggagtggagtgatttcttINSctggatatatctttactgaa							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	20620529	20620530	-	A	INS	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	frame_shift_ins	c.566_565	p.E189fs	1.000:1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	59	0	0	21	3	12.5	-	-	-	A	20620530	-	A	20620529	7	5	341	1	0	1	1	0	0	0	0	0	13097	1783	62	0	5187	0	RALGAPA2	20	20620529	Frame_Shift_Ins	INS	-	TCGA-AO-A128-01A-11D-A10M-09	127059	20620529	42404991	831	37390										
ACSS1	0	genome.wustl.edu	37	chr20	24994688	24994688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttcttccgagggccgtggtGcgatgcagatgccacctgtt	13	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	24994688	24994688	G	A	SNP	ACSS1	ENST00000323482	human	ensembl	69_37n	-1	known	missense	c.1361	p.A454V	0.919	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930	192	0	0	164	45	21.53	-	-	-	A	24994688	G	A	24994688	3	1	341	1	0	0	0	0	1	0	0	0	188	1319	46	4	732	4	ACSS1	20	24994688	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	4374159	24994688	38030832	832	37391										
DEFB121	0	genome.wustl.edu	37	chr20	29993906	29993906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatcctgtttacctggggtgAcctgggccaggagcagagta	15	9	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	29993906	29993906	A	G	SNP	DEFB121	ENST00000376314	human	ensembl	69_37n	-1	known	missense	c.50	p.V17A	0.012	NULL	NULL	-	no_errors	DEFB121	HGNC	ENSG00000204548	168	0	0	35	12	25.53	-	-	-	G	29993906	A	G	29993906	3	3	341	1	0	0	0	0	1	0	0	0	4443	275	10	5	188	5	DEFB121	20	29993906	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	4999218	29993906	33031614	833	37392										
SUN5	0	genome.wustl.edu	37	chr20	31573619	31573619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggggatgtgctgcagcgtgaGgttggacaggtaaaccttct	16	7	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	31573619	31573619	G	T	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	missense	c.820	p.L274I	0.492	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	571	0	0	571	84	12.8	-	-	-	T	31573619	G	T	31573619	3	4	341	1	0	0	0	0	1	0	0	0	15485	1000	35	4	331	4	SUN5	20	31573619	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1579713	31573619	31451901	834	37393										
ZNF341	0	genome.wustl.edu	37	chr20	32333047	32333047	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actggccaccaacagcatctAcccaccttcggcagcaccca	6	19	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	32333047	32333047	A	G	SNP	ZNF341	ENST00000375200	human	ensembl	69_37n	1	known	missense	c.281	p.Y94C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061	139	0	0	152	30	16.48	-	-	-	G	32333047	A	G	32333047	3	3	341	1	0	0	0	0	1	0	0	0	17953	391	14	5	291	5	ZNF341	20	32333047	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	759428	32333047	30692473	835	37394										
EIF6	0	genome.wustl.edu	37	chr20	33868520	33868520	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtggtgacattgcccaaggcTgagagccgctcctccacccg	12	15	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	33868520	33868520	T	C	SNP	EIF6	ENST00000415116	human	ensembl	69_37n	-1	known	missense	c.425	p.Q142R	0.729	NULL	NULL	-	no_errors	EIF6	HGNC	ENSG00000242372	432	2	0.46	535	131	19.58	-	-	-	C	33868520	T	C	33868520	3	2	341	1	0	0	0	0	1	0	0	0	5082	1567	55	5	447	5	EIF6	20	33868520	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1535473	33868520	29157000	836	37395										
CEP250	0	genome.wustl.edu	37	chr20	34053953	34053953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcccttagggaagatgtggAaaaactgacagtggactgga	14	6	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	34053953	34053953	A	G	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.416	p.E139G	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	103	1	0.96	50	7	12.28	-	-	-	G	34053953	A	G	34053953	3	3	341	1	0	0	0	0	1	0	0	0	3281	246	9	5	430	5	CEP250	20	34053953	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	185433	34053953	28971567	837	37396										
C20orf152	0	genome.wustl.edu	37	chr20	34563924	34563924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggacttcattgcagaggaGgtatgcatagctcgaaactt	11	7	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	34563924	34563924	G	T	SNP	C20orf152	ENST00000373973	human	ensembl	69_37n	1	known	missense	c.243	p.E81D	0.978	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	C20orf152	HGNC	ENSG00000149646	186	0	0	184	37	16.67	-	-	-	T	34563924	G	T	34563924	3	4	341	1	0	0	0	0	1	0	0	0	2112	1014	35	4	253	4	C20orf152	20	34563924	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	509971	34563924	28461596	838	37397										
DSN1	0	genome.wustl.edu	37	chr20	35399443	35399443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggtggctgagatcacaatttCccccttttttagggctagag	11	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	35399443	35399443	C	T	SNP	DSN1	ENST00000373745	human	ensembl	69_37n	-1	known	missense	c.188	p.G63E	0.000	NULL	pfam_Mtw1_DSN1	-	no_errors	DSN1	HGNC	ENSG00000149636	121	0	0	124	33	21.02	-	-	-	T	35399443	C	T	35399443	3	4	341	1	0	0	0	0	1	0	0	0	4815	855	30	2	918	2	DSN1	20	35399443	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	835519	35399443	27626077	839	37398										
ADIG	0	genome.wustl.edu	37	chr20	37209913	37209913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	catgaagtaccctttgatgcCgctggtgaacgacctcacat	9	12	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	37209913	37209913	C	A	SNP	ADIG	ENST00000537425	human	ensembl	69_37n	1	known	missense	c.5	p.P2Q	0.979	NULL	NULL	-	no_errors	ADIG	HGNC	ENSG00000182035	522	0	0	270	40	12.9	-	-	-	A	37209913	C	A	37209913	3	1	341	1	0	0	0	0	1	0	0	0	316	652	23	3	22	3	ADIG	20	37209913	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1810470	37209913	25815607	840	37399										
EMILIN3	0	genome.wustl.edu	37	chr20	39991351	39991351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggggatggtggggcttcccgCagccgctgcaggtgggcctc	19	12	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	39991351	39991351	C	T	SNP	EMILIN3	ENST00000332312	human	ensembl	69_37n	-1	known	silent	c.858	p.L286	0.470	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798	131	0	0	175	41	18.98	-	-	-	T	39991351	C	T	39991351	2	4	341	1	0	0	0	0	0	0	0	1	5132	697	25	4		4	EMILIN3	20	39991351	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	2781438	39991351	23034169	841	37400										
SERINC3	0	genome.wustl.edu	37	chr20	43129937	43129937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttggctattagtggaagtgcGgatgctggaaagtgatccca	14	6	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	43129937	43129937	G	A	SNP	SERINC3	ENST00000255175	human	ensembl	69_37n	-1	known	missense	c.1060	p.R354C	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824	137	0	0	32	6	15.79	-	-	-	A	43129937	G	A	43129937	3	1	341	1	0	0	0	0	1	0	0	0	14169	1116	39	1	369	1	SERINC3	20	43129937	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3138586	43129937	19895583	842	37401										
PIGT	0	genome.wustl.edu	37	chr20	44049256	44049256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaagacctatgccatctatgActtgcttgacaccgccatga	8	12	1	4			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	44049256	44049256	A	G	SNP	PIGT	ENST00000279036	human	ensembl	69_37n	1	known	missense	c.956	p.D319G	1.000	pfam_Gpi16	pfam_Gpi16	-	no_errors	PIGT	HGNC	ENSG00000124155	267	1	0.37	241	39	13.88	-	-	-	G	44049256	A	G	44049256	3	3	341	1	0	0	0	0	1	0	0	0	11973	275	10	5	986	5	PIGT	20	44049256	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	919319	44049256	18976264	843	37402										
CTSA	0	genome.wustl.edu	37	chr20	44521946	44521946	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actaccatggccttctggggAacaggtatgggatagggcag	15	8	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	44521946	44521946	A	G	SNP	CTSA	ENST00000372484	human	ensembl	69_37n	1	known	missense	c.742	p.N248D	0.935	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601	305	2	0.65	413	51	10.99	-	-	-	G	44521946	A	G	44521946	3	3	341	1	0	0	0	0	1	0	0	0	4061	246	9	5	768	5	CTSA	20	44521946	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	472690	44521946	18503574	844	37403										
ZNF335	0	genome.wustl.edu	37	chr20	44580825	44580825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgggcactgaaggggcagtcGgggcacttgaaggcaccagg	18	10	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	44580825	44580825	G	A	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	silent	c.3150	p.P1050	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	12	0	0	28	7	20	-	-	-	A	44580825	G	A	44580825	2	1	341	1	0	0	0	0	0	0	0	1	17948	1103	39	1		1	ZNF335	20	44580825	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	58879	44580825	18444695	845	37404										
SPATA2	0	genome.wustl.edu	37	chr20	48522305	48522305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gacttttgaacactgggtgcAggtgttggtggcgcctgggc	17	8	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	48522305	48522305	A	G	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	missense	c.1414	p.C472R	1.000	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	277	1	0.36	380	92	19.37	-	-	-	G	48522305	A	G	48522305	3	3	341	1	0	0	0	0	1	0	0	0	15096	188	7	5	152	5	SPATA2	20	48522305	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	3941480	48522305	14503215	846	37405										
MOCS3	0	genome.wustl.edu	37	chr20	49575993	49575993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcccctcgtgtctgccagtgCcttgcgcttcgagggccaaa	12	15	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	49575993	49575993	C	A	SNP	MOCS3	ENST00000244051	human	ensembl	69_37n	1	known	missense	c.614	p.A205D	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217	92	0	0	138	35	20.23	-	-	-	A	49575993	C	A	49575993	3	1	341	1	0	0	0	0	1	0	0	0	9764	739	26	4	616	4	MOCS3	20	49575993	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1053688	49575993	13449527	847	37406										
KCNG1	0	genome.wustl.edu	37	chr20	49626119	49626119	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tacctgctcctcctcctcccTcaggctgggcaaggtgctga	10	16	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	49626119	49626119	T	G	SNP	KCNG1	ENST00000371571	human	ensembl	69_37n	-1	known	silent	c.757	p.R253	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559	112	0	0	161	31	16.15	-	-	-	G	49626119	T	G	49626119	2	3	341	1	0	0	0	0	0	0	0	1	8081	1550	54	5		5	KCNG1	20	49626119	Silent	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	50126	49626119	13399401	848	37407										
C20orf197	0	genome.wustl.edu	37	chr20	58645900	58645900	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	caaagttctgcaccaaataaAcccttggattggcttgatcc	7	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	58645900	58645900	A	C	SNP	C20orf197	ENST00000313426	human	ensembl	69_37n	1	known	missense	c.318	p.K106N	0.000	NULL	NULL	-	no_errors	C20orf197	HGNC	ENSG00000176659	87	0	0	49	10	16.95	-	-	-	C	58645900	A	C	58645900	3	2	341	1	0	0	0	0	1	0	0	0	2122	40	2	5	324	5	C20orf197	20	58645900	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	9019781	58645900	4379620	849	37408										
TAF4	0	genome.wustl.edu	37	chr20	60587944	60587944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctgagacacttgcttaattAtggtagttggggtcacctgc	11	9	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	60587944	60587944	A	G	SNP	TAF4	ENST00000252996	human	ensembl	69_37n	-1	known	missense	c.1568	p.I523T	1.000	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699	150	0	0	189	60	23.9	-	-	-	G	60587944	A	G	60587944	3	3	341	1	0	0	0	0	1	0	0	0	15618	449	16	5	1741	5	TAF4	20	60587944	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	1942044	60587944	2437576	850	37409										
DIDO1	0	genome.wustl.edu	37	chr20	61542562	61542562	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttttcagaagaggctggtcGttccttcacagctgtggaag	12	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	61542562	61542562	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	nonsense	c.403	p.R135*	0.001	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	22	0	0	58	18	23.68	-	-	-	A	61542562	G	A	61542562	4	1	341	1	0	0	0	0	0	1	0	0	4558	1153	40	1	6505	1	DIDO1	20	61542562	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	954618	61542562	1482958	851	37410										
ZGPAT	0	genome.wustl.edu	37	chr20	62366769	62366769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agaagccggggcggccccagCggggaggaggagcaaggaca	20	10	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	62366769	62366769	C	T	SNP	ZGPAT	ENST00000328969	human	ensembl	69_37n	1	known	missense	c.1310	p.A437V	0.000	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114	17	0	0	59	15	20	-	-	-	T	62366769	C	T	62366769	3	4	341	1	0	0	0	0	1	0	0	0	17770	768	27	1	1328	1	ZGPAT	20	62366769	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	824207	62366769	658751	852	37411										
UCKL1	0	genome.wustl.edu	37	chr20	62577054	62577054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gatgccctcaaagatgatgaCgtttgcaccatacagtgttt	9	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	62577054	62577054	C	T	SNP	UCKL1	ENST00000354216	human	ensembl	69_37n	-1	known	missense	c.604	p.V202I	1.000	pfam_PRK/URK,prints_PRK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_CPT,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276	127	1	0.78	200	45	18.37	-	-	-	T	62577054	C	T	62577054	3	4	341	1	0	0	0	0	1	0	0	0	17022	536	19	1	1086	1	UCKL1	20	62577054	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	210285	62577054	448466	853	37412										
ZNF512B	0	genome.wustl.edu	37	chr20	62592727	62592727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actgaactccttcggacacaGcagacagcggtacttccctg	9	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	62592727	62592727	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	69_37n	-1	known	silent	c.2362	p.L788	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700	114	0	0	216	50	18.66	-	-	-	A	62592727	G	A	62592727	2	1	341	1	0	0	0	0	0	0	0	1	18053	962	34	4		4	ZNF512B	20	62592727	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	15673	62592727	432793	854	37413										
TCEA2	0	genome.wustl.edu	37	chr20	62698301	62698301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggatgtctgtcaacgcccttCggaagcagagctcggatgag	14	10	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	20	62698301	62698301	C	T	SNP	TCEA2	ENST00000343484	human	ensembl	69_37n	1	known	missense	c.169	p.R57W	0.892	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_TFIIS_N,pfam_Znf_TFIIS,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA2	HGNC	ENSG00000171703	144	0	0	237	27	10.19	-	-	-	T	62698301	C	T	62698301	3	4	341	1	0	0	0	0	1	0	0	0	15763	875	31	1	179	1	TCEA2	20	62698301	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	105574	62698301	327219	855	37414										
SYNJ1	0	genome.wustl.edu	37	chr21	34003518	34003518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaacttggctgattacccagTaagtctgaacaagctgactt	9	9	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	34003518	34003518	T	C	SNP	SYNJ1	ENST00000479254	human	ensembl	69_37n	-1	putative	missense	c.53	p.Y18C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYNJ1	HGNC	ENSG00000159082	188	0	0	60	9	13.04	-	-	-	C	34003518	T	C	34003518	3	2	341	1	0	0	0	0	1	0	0	0	15544	1635	57	5	216	5	SYNJ1	21	34003518	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09		34003518	14126377	856	37415										
IFNAR2	0	genome.wustl.edu	37	chr21	34635689	34635689	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggccagcggggaagggacaCagccaacctttcccagcccc	12	16	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	34635689	34635689	C	T	SNP	IFNAR2	ENST00000342136	human	ensembl	69_37n	1	known	nonsense	c.1432	p.Q478*	0.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IFNAR2	HGNC	ENSG00000159110	82	0	0	92	24	20.51	-	-	-	T	34635689	C	T	34635689	4	4	341	1	0	0	0	0	0	1	0	0	7599	479	17	4	1622	4	IFNAR2	21	34635689	Nonsense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	632171	34635689	13494206	857	37416										
PRDM15	0	genome.wustl.edu	37	chr21	43221614	43221614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aatgggccacagactgtgggTtcgaggcttccggctggggg	18	9	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	43221614	43221614	T	C	SNP	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	missense	c.4310	p.N1437S	0.475	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	190	0	0	312	37	10.54	-	-	-	C	43221614	T	C	43221614	3	2	341	1	0	0	0	0	1	0	0	0	12537	1725	60	5	217	5	PRDM15	21	43221614	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8585925	43221614	4908281	858	37417										
ABCG1	0	genome.wustl.edu	37	chr21	43711694	43711694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgctttgtgctgtttgccgcGctgggcaccatgacctccct	11	15	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	43711694	43711694	G	A	SNP	ABCG1	ENST00000489035	human	ensembl	69_37n	1	putative	missense	c.823	p.A275T	0.001	pfam_ABC_2_trans	pfam_ABC_2_trans	-	no_start_codon:pseudogene:no_stop_codon	ABCG1	HGNC	ENSG00000160179	163	0	0	213	37	14.8	-	-	-	A	43711694	G	A	43711694	3	1	341	1	0	0	0	0	1	0	0	0	68	1074	38	1	1835	1	ABCG1	21	43711694	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	490080	43711694	4418201	859	37418										
AIRE	0	genome.wustl.edu	37	chr21	45717585	45717585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggccatccagagcatggcccGtccggcggcccccttcccct	11	20	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	45717585	45717585	G	A	SNP	AIRE	ENST00000291582	human	ensembl	69_37n	1	known	missense	c.1613	p.R538H	1.000	NULL	pfam_Sp100,pfam_Znf_PHD-finger,pfam_SAND_dom,superfamily_Znf_FYVE_PHD,superfamily_SAND_dom-like,smart_SAND_dom,smart_Znf_PHD,prints_AIRE,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	AIRE	HGNC	ENSG00000160224	53	0	0	81	44	35.2	-	-	-	A	45717585	G	A	45717585	3	1	341	1	0	0	0	0	1	0	0	0	437	1145	40	1	1955	1	AIRE	21	45717585	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2005891	45717585	2412310	860	37419										
TRPM2	0	genome.wustl.edu	37	chr21	45833947	45833947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgctgctcaacctcctcatcGccatgttcaagtgagcgcct	8	15	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	45833947	45833947	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.3136	p.A1046T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	243	0	0	290	70	19.44	-	-	-	A	45833947	G	A	45833947	3	1	341	1	0	0	0	0	1	0	0	0	16682	1087	38	1	3214	1	TRPM2	21	45833947	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	116362	45833947	2295948	861	37420										
PCNT	0	genome.wustl.edu	37	chr21	47817997	47817997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttcagaggctggaggggcagCtccgccaggcggccaagccg	17	13	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	21	47817997	47817997	C	T	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.4516	p.L1506F	1.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	71	0	0	134	24	15.19	-	-	-	T	47817997	C	T	47817997	3	4	341	1	0	0	0	0	1	0	0	0	11663	797	28	4	4606	4	PCNT	21	47817997	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1984050	47817997	311898	862	37421										
DGCR14	0	genome.wustl.edu	37	chr22	19121972	19121972	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcgacatggctgggctcaGgcctttgggggtgaggctgg	20	8	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	19121972	19121972	G	T	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.1168	p.L390M	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	129	0	0	162	35	17.68	-	-	-	T	19121972	G	T	19121972	3	4	341	1	0	0	0	0	1	0	0	0	4496	991	35	4	266	4	DGCR14	22	19121972	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09		19121972	32182594	863	37422										
SEPT5	0	genome.wustl.edu	37	chr22	19707410	19707410	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggaccggaagctgctcagtgCtgagggtgagtggcccccag	17	11	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	19707410	19707410	C	A	SNP	SEPT5	ENST00000383045	human	ensembl	69_37n	1	known	missense	c.260	p.A87D	1.000	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT5	HGNC	ENSG00000184702	82	0	0	145	19	11.59	-	-	-	A	19707410	C	A	19707410	3	1	341	1	0	0	0	0	1	0	0	0	14155	797	28	4	247	4	SEPT5	22	19707410	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	585438	19707410	31597156	864	37423										
TXNRD2	0	genome.wustl.edu	37	chr22	19906523	19906523	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gtgccgccgaggccccaccgGgtgcctgggacgtgggaaga	18	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	19906523	19906523	G	T	SNP	TXNRD2	ENST00000535882	human	ensembl	69_37n	-1	known	silent	c.231	p.T77	0.991	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,pfam_GIDA-rel,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	48	0	0	39	17	29.31	-	-	-	T	19906523	G	T	19906523	2	4	341	1	0	0	0	0	0	0	0	1	16905	1219	43	4		4	TXNRD2	22	19906523	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	199113	19906523	31398043	865	37424										
BCR	0	genome.wustl.edu	37	chr22	23651726	23651726	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccccagaaggatagggtggcCtctgttcatttcaaatcagt	10	10	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	23651726	23651726	C	T	SNP	BCR	ENST00000436990	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	54	0	0	67	22	24.72	-	-	-	T	23651726	C	T	23651726	1	4	341	0	1	0	0	0	0	0	0	0	1392	696	24	4		4	BCR	22	23651726	RNA	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	3745203	23651726	27652840	866	37425										
CHCHD10	0	genome.wustl.edu	37	chr22	24108417	24108417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gaactgcctgatctcgtaggCgcagggccccatctgcaggg	14	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	24108417	24108417	C	T	SNP	CHCHD10	ENST00000484558	human	ensembl	69_37n	-1	known	missense	c.307	p.A103T	0.917	pfam_CHCH	pfam_CHCH	-	no_errors	CHCHD10	HGNC	ENSG00000250479	67	0	0	71	18	20	-	-	-	T	24108417	C	T	24108417	3	4	341	1	0	0	0	0	1	0	0	0	3344	768	27	1	129	1	CHCHD10	22	24108417	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	456691	24108417	27196149	867	37426										
SMARCB1	0	genome.wustl.edu	37	chr22	24159112	24159112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aggaccagtcagaccagcgcGtcatcatcaaggtaggtgac	12	11	4	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	24159112	24159112	G	A	SNP	SMARCB1	ENST00000263121	human	ensembl	69_37n	1	known	missense	c.784	p.V262I	1.000	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956	156	0	0	86	41	32.28	-	-	-	A	24159112	G	A	24159112	3	1	341	1	0	0	0	0	1	0	0	0	14863	1145	40	1	806	1	SMARCB1	22	24159112	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	50695	24159112	27145454	868	37427										
MYO18B	0	genome.wustl.edu	37	chr22	26242210	26242210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgccagcagccttgccgcggTgaggaggaaagccccgtgct	15	13	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	26242210	26242210	T	C	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.3512	p.V1171A	0.001	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	242	2	0.8	152	55	26.19	-	-	-	C	26242210	T	C	26242210	3	2	341	1	0	0	0	0	1	0	0	0	10138	1696	59	5	3582	5	MYO18B	22	26242210	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2083098	26242210	25062356	869	37428										
PITPNB	0	genome.wustl.edu	37	chr22	28292612	28292612	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aaatcatctttcatatattcAttctgcagaaaacacaacag	3	9	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	28292612	28292612	A	G	SNP	PITPNB	ENST00000455418	human	ensembl	69_37n	-1	known	silent	c.306	p.N102	1.000	pfam_PI_transfer,prints_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNB	HGNC	ENSG00000180957	135	0	0	42	17	28.81	-	-	-	G	28292612	A	G	28292612	2	3	341	1	0	0	0	0	0	0	0	1	12022	214	8	5		5	PITPNB	22	28292612	Silent	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	2050402	28292612	23011954	870	37429										
THOC5	0	genome.wustl.edu	37	chr22	29940566	29940566	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gggtcccgcagatccacctcGgcctcctcactgtagtattt	9	15	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	29940566	29940566	G	A	SNP	THOC5	ENST00000397871	human	ensembl	69_37n	-1	known	silent	c.123	p.A41	0.121	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	139	1	0.71	83	20	19.23	-	-	-	A	29940566	G	A	29940566	2	1	341	1	0	0	0	0	0	0	0	1	15963	1103	39	1		1	THOC5	22	29940566	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1647954	29940566	21364000	871	37430										
INPP5J	0	genome.wustl.edu	37	chr22	31529471	31529471	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ggatgggaatacctaccaggTacttaaaaggagtgggagag	15	5	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	31529471	31529471	T	C	SNP	INPP5J	ENST00000331075	human	ensembl	69_37n	1	known	splice_site	c.2409+2	e11+2	0.997	-	-	-	no_errors	INPP5J	HGNC	ENSG00000185133	245	0	0	296	54	15.34	-	-	-	C	31529471	T	C	31529471	5	2	341	1	0	0	0	0	0	0	1	0	7813	1652	57	5	1349	5	INPP5J	22	31529471	Splice_Site	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1588905	31529471	19775095	872	37431										
DEPDC5	0	genome.wustl.edu	37	chr22	32272192	32272192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcatctggcgaagcctggcGgaccttcatctacggcttct	11	13	4	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	32272192	32272192	G	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.3680	p.R1227Q	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	58	0	0	39	12	23.53	-	-	-	A	32272192	G	A	32272192	3	1	341	1	0	0	0	0	1	0	0	0	4478	1116	39	1	3879	1	DEPDC5	22	32272192	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	742721	32272192	19032374	873	37432										
CDC42EP1	0	genome.wustl.edu	37	chr22	37962744	37962744	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cccagctcaaccaggccgccTacgacagcctcgtggttggc	11	17	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	37962744	37962744	T	C	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	missense	c.388	p.Y130H	1.000	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	187	1	0.53	222	27	10.84	-	-	-	C	37962744	T	C	37962744	3	2	341	1	0	0	0	0	1	0	0	0	3104	1522	53	5	390	5	CDC42EP1	22	37962744	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	5690552	37962744	13341822	874	37433										
TRIOBP	0	genome.wustl.edu	37	chr22	38111850	38111850	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgatcccgaggaggcctcgGgaggggccgagagctgacag	18	10	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	38111850	38111850	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	silent	c.537	p.R179	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	44	0	0	62	17	21.52	-	-	-	A	38111850	G	A	38111850	2	1	341	1	0	0	0	0	0	0	0	1	16649	1219	43	4		4	TRIOBP	22	38111850	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	149106	38111850	13192716	875	37434										
ANKRD54	0	genome.wustl.edu	37	chr22	38229172	38229172	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aagaaaccacatacctcctcGtagcagtgtggtgatgacag	10	10	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	38229172	38229172	G	A	SNP	ANKRD54	ENST00000215941	human	ensembl	69_37n	-1	known	nonsense	c.589	p.R197*	0.979	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD54	HGNC	ENSG00000100124	464	0	0	463	67	12.62	-	-	-	A	38229172	G	A	38229172	4	1	341	1	0	0	0	0	0	1	0	0	679	1153	40	1	329	1	ANKRD54	22	38229172	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	117322	38229172	13075394	876	37435										
MICALL1	0	genome.wustl.edu	37	chr22	38328625	38328625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atggataccattgagcgccgGctggatgccctggagcaccg	14	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	38328625	38328625	G	A	SNP	MICALL1	ENST00000454685	human	ensembl	69_37n	1	putative	missense	c.808	p.A270T	1.000	pfam_DUF3585	pfam_DUF3585	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MICALL1	HGNC	ENSG00000100139	107	0	0	134	21	13.55	-	-	-	A	38328625	G	A	38328625	3	1	341	1	0	0	0	0	1	0	0	0	9644	1190	42	4	2124	4	MICALL1	22	38328625	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	99453	38328625	12975941	877	37436										
TNRC6B	0	genome.wustl.edu	37	chr22	40719021	40719021	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agaaccagtcagatcccgtgGgacctgctctgaatcttttt	9	11	3	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	40719021	40719021	G	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	nonsense	c.5278	p.G1760*	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	49	0	0	50	13	20.63	-	-	-	T	40719021	G	T	40719021	4	4	341	1	0	0	0	0	0	1	0	0	16436	1233	43	4	5489	4	TNRC6B	22	40719021	Nonsense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2390396	40719021	10585545	878	37437										
TTLL12	0	genome.wustl.edu	37	chr22	43563971	43563971	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agcagctcagagaactgaggTtggaatcctgccccaagcac	11	12	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	43563971	43563971	T	G	SNP	TTLL12	ENST00000494035	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTLL12	HGNC	ENSG00000100304	56	0	0	97	15	13.04	-	-	-	G	43563971	T	G	43563971	1	3	341	0	1	0	0	0	0	0	0	0	16822	1740	60	5		5	TTLL12	22	43563971	RNA	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2844950	43563971	7740595	879	37438										
SCUBE1	0	genome.wustl.edu	37	chr22	43610111	43610111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttgcctccacattccgacaCgttgcgggcaccaggcagac	10	16	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	43610111	43610111	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	69_37n	-1	known	missense	c.2038	p.V680M	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	44	0	0	52	9	14.75	-	-	-	T	43610111	C	T	43610111	3	4	341	1	0	0	0	0	1	0	0	0	14032	536	19	1	956	1	SCUBE1	22	43610111	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	46140	43610111	7694455	880	37439										
SAMM50	0	genome.wustl.edu	37	chr22	44392209	44392209	+	RNA	DEL	T	T	-													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccgcatctgatctctccccTttttttaggatatgtgatgg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	44392209	44392209	T	-	DEL	SAMM50	ENST00000493621	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347	135	0	0	164	25	12.95	-	-	-	-	44392209	T	-	44392209	6	5	341	0	1	1	0	1	0	0	0	0	13915	1624	56	0		0	SAMM50	22	44392209	RNA	DEL	T	TCGA-AO-A128-01A-11D-A10M-09	782098	44392209	6912357	881	37440										
BRD1	0	genome.wustl.edu	37	chr22	50197950	50197950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gagcagccagtagctgtgggCtcgctccacaaactgcttct	11	13	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	50197950	50197950	C	T	SNP	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	missense	c.1426	p.A476T	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	102	0	0	114	24	17.39	-	-	-	T	50197950	C	T	50197950	3	4	341	1	0	0	0	0	1	0	0	0	1509	797	28	4	1794	4	BRD1	22	50197950	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	5805741	50197950	1106616	882	37441										
TUBGCP6	0	genome.wustl.edu	37	chr22	50664266	50664266	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtggcgggccaccctctccAtgcgcccaacgtagacggca	12	16	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	22	50664266	50664266	A	G	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.1940	p.M647T	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	112	0	0	154	29	15.85	-	-	-	G	50664266	A	G	50664266	3	3	341	1	0	0	0	0	1	0	0	0	16867	217	8	5	3583	5	TUBGCP6	22	50664266	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	466316	50664266	640300	883	37442										
ARSD	0	genome.wustl.edu	37	chrX	2825381	2825381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgcagcacggctgcagccaCggcttccacaggatgttgct	12	15	0	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	2825381	2825381	C	T	SNP	ARSD	ENST00000381154	human	ensembl	69_37n	-1	known	silent	c.1713	p.P571	0.993	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756	76	0	0	71	17	19.32	-	-	-	T	2825381	C	T	2825381	2	4	341	1	0	0	0	0	0	0	0	1	993	523	19	1		1	ARSD	23	2825381	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09		2825381	152445179	884	37443										
KAL1	0	genome.wustl.edu	37	chrX	8555971	8555971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	acttaacctccagctgtccaGactgcagttctgtaaatcgt	7	12	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	8555971	8555971	G	A	SNP	KAL1	ENST00000262648	human	ensembl	69_37n	-1	known	missense	c.590	p.S197F	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_4-disulphide_core	-	no_errors	KAL1	HGNC	ENSG00000011201	169	0	0	18	6	25	-	-	-	A	8555971	G	A	8555971	3	1	341	1	0	0	0	0	1	0	0	0	8028	942	33	2	1492	2	KAL1	23	8555971	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5730590	8555971	146714589	885	37444										
PRPS2	0	genome.wustl.edu	37	chrX	12809625	12809625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgcgccccaccatgcccaaCatcgtgctgttcagcggcag	10	18	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	12809625	12809625	C	T	SNP	PRPS2	ENST00000398491	human	ensembl	69_37n	1	known	silent	c.9	p.N3	1.000	NULL	pfam_PRibTrfase,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS2	HGNC	ENSG00000101911	28	0	0	39	9	18.37	-	-	-	T	12809625	C	T	12809625	2	4	341	1	0	0	0	0	0	0	0	1	12661	477	17	4		4	PRPS2	23	12809625	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4253654	12809625	142460935	886	37445										
TLR7	0	genome.wustl.edu	37	chrX	12885643	12885643	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agctgatcttggcacctctcAtgctctgctctcttcaacca	6	15	5	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	12885643	12885643	A	G	SNP	TLR7	ENST00000484204	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TLR7	HGNC	ENSG00000196664	387	1	0.26	82	12	12.77	-	-	-	G	12885643	A	G	12885643	1	3	341	0	1	0	0	0	0	0	0	0	16051	232	8	5		5	TLR7	23	12885643	RNA	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	76018	12885643	142384917	887	37446										
CA5B	0	genome.wustl.edu	37	chrX	15790679	15790679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gcagttccattttcactgggGggccatcgatgcctggggtt	14	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	15790679	15790679	G	A	SNP	CA5B	ENST00000318636	human	ensembl	69_37n	1	known	missense	c.401	p.G134E	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA5B	HGNC	ENSG00000169239	151	0	0	48	6	11.11	-	-	-	A	15790679	G	A	15790679	3	1	341	1	0	0	0	0	1	0	0	0	2545	1232	43	4	411	4	CA5B	23	15790679	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	2905036	15790679	139479881	888	37447										
RAI2	0	genome.wustl.edu	37	chrX	17819745	17819745	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agttgaggtgctgaaagacgTgctgctccagcaccacgggc	14	11	0	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	17819745	17819745	T	G	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.386	p.H129P	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	164	1	0.6	111	14	11.2	-	-	-	G	17819745	T	G	17819745	3	3	341	1	0	0	0	0	1	0	0	0	13092	1696	59	5	1210	5	RAI2	23	17819745	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2029066	17819745	137450815	889	37448										
SH3KBP1	0	genome.wustl.edu	37	chrX	19764460	19764460	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttattggttcttaaaatcgTttcagaagacagcaaagagt	8	6	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	19764460	19764460	T	G	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.262	p.T88P	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	137	0	0	85	12	12.37	-	-	-	G	19764460	T	G	19764460	3	3	341	1	0	0	0	0	1	0	0	0	14344	1725	60	5	1815	5	SH3KBP1	23	19764460	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1944715	19764460	135506100	890	37449										
CASK	0	genome.wustl.edu	37	chrX	41495899	41495899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggaagatgaatcttgtaggCgtaacgatcccgctcctatg	11	9	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	41495899	41495899	C	T	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.847	p.A283T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	265	0	0	80	13	13.98	-	-	-	T	41495899	C	T	41495899	3	4	341	1	0	0	0	0	1	0	0	0	2690	768	27	1	2009	1	CASK	23	41495899	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	21731439	41495899	113774661	891	37450										
RBM10	0	genome.wustl.edu	37	chrX	47041645	47041645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ccgccctggagcagtcggccGacggacataaggagacaggg	16	12	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	47041645	47041645	G	A	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	missense	c.1870	p.D624N	0.036	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	364	0	0	449	75	14.29	-	-	-	A	47041645	G	A	47041645	3	1	341	1	0	0	0	0	1	0	0	0	13194	1058	37	1	1932	1	RBM10	23	47041645	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	5545746	47041645	108228915	892	37451										
ZNF41	0	genome.wustl.edu	37	chrX	47306831	47306831	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ttccaggtgaagactttctcAgtcactggctttatagcgtt	9	9	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	47306831	47306831	A	G	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	nonstop	c.2368	p.*790R	0.552	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	85	0	0	51	13	20.31	-	-	-	G	47306831	A	G	47306831	4	3	341	1	0	0	0	0	0	0	0	0	17985	201	7	5	5	5	ZNF41	23	47306831	Nonstop_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	265186	47306831	107963729	893	37452										
ARAF	0	genome.wustl.edu	37	chrX	47426043	47426043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cctttcccctggcagcccccGcacccagcactgtgacccgg	9	21	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	47426043	47426043	G	A	SNP	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	missense	c.563	p.R188H	0.006	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	129	0	0	159	18	10.11	-	-	-	A	47426043	G	A	47426043	3	1	341	1	0	0	0	0	1	0	0	0	839	1087	38	1	585	1	ARAF	23	47426043	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	119212	47426043	107844517	894	37453										
GRIPAP1	0	genome.wustl.edu	37	chrX	48834656	48834656	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	taggtgaggagaaaaggggaGgggttctcagatttttgggt	18	2	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	48834656	48834656	G	T	SNP	GRIPAP1	ENST00000473581	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	221	0	0	278	33	10.58	-	-	-	T	48834656	G	T	48834656	1	4	341	0	1	0	0	0	0	0	0	0	6840	1015	35	4		4	GRIPAP1	23	48834656	RNA	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1408613	48834656	106435904	895	37454										
TFE3	0	genome.wustl.edu	37	chrX	48895889	48895889	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cagcttgggcccgagtgtggTggacaggtactgtttcacct	14	10	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	48895889	48895889	T	C	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	missense	c.613	p.T205A	0.926	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	145	0	0	156	33	17.37	-	-	-	C	48895889	T	C	48895889	3	2	341	1	0	0	0	0	1	0	0	0	15895	1696	59	5	1142	5	TFE3	23	48895889	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	61233	48895889	106374671	896	37455										
SMC1A	0	genome.wustl.edu	37	chrX	53409197	53409197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agagctgccactgtcttctcCccgcctgacaagttgtccat	8	15	2	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	53409197	53409197	C	T	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	silent	c.3393	p.G1131	0.995	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	151	0	0	63	13	17.11	-	-	-	T	53409197	C	T	53409197	2	4	341	1	0	0	0	0	0	0	0	1	14870	610	22	4		4	SMC1A	23	53409197	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4513308	53409197	101861363	897	37456										
TRO	0	genome.wustl.edu	37	chrX	54954167	54954167	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agttcttctggggcttgcgcTcctaccacgagactagcaag	11	12	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	54954167	54954167	T	C	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.1831	p.S611P	0.988	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	204	0	0	71	11	13.41	-	-	-	C	54954167	T	C	54954167	3	2	341	1	0	0	0	0	1	0	0	0	16670	1551	54	5	1869	5	TRO	23	54954167	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1544970	54954167	100316393	898	37457										
FAM123B	0	genome.wustl.edu	37	chrX	63410163	63410163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggcactgatagtgatattgAcatggtcataggaggtatgc	13	5	1	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	63410163	63410163	A	G	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.3004	p.S1002P	0.204	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	219	0	0	95	11	10.38	-	-	-	G	63410163	A	G	63410163	3	3	341	1	0	0	0	0	1	0	0	0	5463	275	10	5	407	5	FAM123B	23	63410163	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	8455996	63410163	91860397	899	37458										
KIF4A	0	genome.wustl.edu	37	chrX	69510176	69510176	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tggccaagtcatggagcgtgAatctcccaagtcagtgttcc	11	11	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	69510176	69510176	A	T	SNP	KIF4A	ENST00000485406	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	KIF4A	HGNC	ENSG00000090889	28	0	0	45	11	19.64	-	-	-	T	69510176	A	T	69510176	1	4	341	0	1	0	0	0	0	0	0	0	8355	261	9	5		5	KIF4A	23	69510176	RNA	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6100013	69510176	85760384	900	37459										
MED12	0	genome.wustl.edu	37	chrX	70356304	70356304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cacacacacctgaggccccgGccccgcgcctattacctgga	9	19	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	70356304	70356304	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	silent	c.5199	p.R1733	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	56	0	0	54	7	11.48	-	-	-	A	70356304	G	A	70356304	2	1	341	1	0	0	0	0	0	0	0	1	9499	1190	42	4		4	MED12	23	70356304	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	846128	70356304	84914256	901	37460										
ERCC6L	0	genome.wustl.edu	37	chrX	71425475	71425475	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgagaattgaaagagagatgTgttgaatggatttatgcttg	13	1	0	5			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	71425475	71425475	T	C	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.3142	p.T1048A	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	107	0	0	35	9	20.45	-	-	-	C	71425475	T	C	71425475	3	2	341	1	0	0	0	0	1	0	0	0	5255	1696	59	5	614	5	ERCC6L	23	71425475	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	1069171	71425475	83845085	902	37461										
MAGEE1	0	genome.wustl.edu	37	chrX	75649540	75649540	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	accgggaagctccgtgctgcCtaaccctggtgagggcccga	14	14	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	75649540	75649540	C	A	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	missense	c.1217	p.P406H	0.044	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	86	0	0	124	17	12.06	-	-	-	A	75649540	C	A	75649540	3	1	341	1	0	0	0	0	1	0	0	0	9256	681	24	4	1219	4	MAGEE1	23	75649540	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4224065	75649540	79621020	903	37462										
PCDH19	0	genome.wustl.edu	37	chrX	99551784	99551784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgctcaggggacttggaacGgatgggcatggggttccggg	19	7	1	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	99551784	99551784	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.2938	p.R980S	0.969	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	100	0	0	14	3	17.65	-	-	-	T	99551784	G	T	99551784	3	4	341	1	0	0	0	0	1	0	0	0	11587	1116	39	3	512	3	PCDH19	23	99551784	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	23902244	99551784	55718776	904	37463										
PCDH19	0	genome.wustl.edu	37	chrX	99597039	99597039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcatgtccactatccttcaGgctgttgccctctaagtcct	6	15	3	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	99597039	99597039	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.2710	p.L904M	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	735	0	0	166	46	21.7	-	-	-	T	99597039	G	T	99597039	3	4	341	1	0	0	0	0	1	0	0	0	11587	991	35	4	744	4	PCDH19	23	99597039	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	45255	99597039	55673521	905	37464										
SRPX2	0	genome.wustl.edu	37	chrX	99919932	99919932	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	atgggagatggagtggaggcGagcctgtatgtgtaggtaaa	18	3	0	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	99919932	99919932	G	C	SNP	SRPX2	ENST00000373004	human	ensembl	69_37n	1	known	missense	c.517	p.E173Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359	224	0	0	56	11	16.42	-	-	-	C	99919932	G	C	99919932	3	2	341	1	0	0	0	0	1	0	0	0	15256	1059	37	3	531	3	SRPX2	23	99919932	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	322893	99919932	55350628	906	37465										
SYTL4	0	genome.wustl.edu	37	chrX	99956243	99956243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttgtggcgcagggacatccTgattatctcactacctgtgc	10	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	99956243	99956243	T	C	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	missense	c.409	p.R137G	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	363	1	0.27	97	17	14.91	-	-	-	C	99956243	T	C	99956243	3	2	341	1	0	0	0	0	1	0	0	0	15577	1579	55	5	1662	5	SYTL4	23	99956243	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	36311	99956243	55314317	907	37466										
ZMAT1	0	genome.wustl.edu	37	chrX	101139430	101139430	+	Silent	SNP	C	C	T													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	ctcatctttctgaaacaagtCtttggatctagtcctctggc							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	101139430	101139430	C	T	SNP	ZMAT1	ENST00000372782	human	ensembl	69_37n	-1	known	silent	c.969	p.K323	0.187	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	107	0	0	22	5	18.52	-	-	-	T	101139430	C	T	101139430	2	4	341	1	0	0	0	0	0	0	0	1	17787	912	32	2		2	ZMAT1	23	101139430	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	1183187	101139430	54131130	908	37467	308	2								
ZMAT1	0	genome.wustl.edu	37	chrX	101139436	101139436	+	Missense_Mutation	SNP	A	A	C													0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tttctgaaacaagtctttggAtctagtcctctggctttctg							TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	101139436	101139436	A	C	SNP	ZMAT1	ENST00000372782	human	ensembl	69_37n	-1	known	missense	c.963	p.D321E	0.024	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	108	0	0	22	5	18.52	-	-	-	C	101139436	A	C	101139436	3	2	341	1	0	0	0	0	1	0	0	0	17787	330	12	5	957	5	ZMAT1	23	101139436	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	6	101139436	54131124	909	37468	308	2								
RGAG1	0	genome.wustl.edu	37	chrX	109696855	109696855	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actctagatctatgtccttgTcacaaacaacatataccgtg	5	11	3	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	109696855	109696855	T	G	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.3010	p.S1004A	0.099	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	224	0	0	135	26	16.15	-	-	-	G	109696855	T	G	109696855	3	3	341	1	0	0	0	0	1	0	0	0	13357	1667	58	5	3012	5	RGAG1	23	109696855	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	8557419	109696855	45573705	910	37469										
ATP1B4	0	genome.wustl.edu	37	chrX	119512629	119512629	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	actacggcaaactgactcacGtaagctgtattccctttagt	7	11	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	119512629	119512629	G	A	SNP	ATP1B4	ENST00000218008	human	ensembl	69_37n	1	known	splice_site	c.912+1	e7+1	1.000	-	-	-	no_errors	ATP1B4	HGNC	ENSG00000101892	199	0	0	23	7	23.33	-	-	-	A	119512629	G	A	119512629	5	1	341	1	0	0	0	0	0	0	1	0	1139	1159	40	1	939	1	ATP1B4	23	119512629	Splice_Site	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9815774	119512629	35757931	911	37470										
XPNPEP2	0	genome.wustl.edu	37	chrX	128877936	128877936	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgtcttcttgtcatctgtcaGtaccttccagttactgtggt	8	10	5	0			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	128877936	128877936	G	A	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	splice_site	c.124-1	e3-1	1.000	-	-	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	389	0	0	429	146	25.35	-	-	-	A	128877936	G	A	128877936	5	1	341	1	0	0	0	0	0	0	1	0	17540	1043	36	4	133	4	XPNPEP2	23	128877936	Splice_Site	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	9365307	128877936	26392624	912	37471										
ARHGAP36	0	genome.wustl.edu	37	chrX	130222739	130222739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	agaaggaggccaaaactggcGtcagctacttctttccttag	10	10	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	130222739	130222739	G	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1624	p.V542I	0.375	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	200	1	0.5	158	19	10.73	-	-	-	A	130222739	G	A	130222739	3	1	341	1	0	0	0	0	1	0	0	0	885	1145	40	1	1666	1	ARHGAP36	23	130222739	Missense_Mutation	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	1344803	130222739	25047821	913	37472										
ZIC3	0	genome.wustl.edu	37	chrX	136649035	136649035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cttcaagctgagccctgccgCggcgcacgatctatcttcag	10	15	4	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	136649035	136649035	C	T	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	missense	c.185	p.A62V	0.831	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	20	0	0	19	6	24	-	-	-	T	136649035	C	T	136649035	3	4	341	1	0	0	0	0	1	0	0	0	17776	768	27	1	187	1	ZIC3	23	136649035	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	6426296	136649035	18621525	914	37473										
MAGEC3	0	genome.wustl.edu	37	chrX	140984787	140984787	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	cgcagagtcctccccagagtCctctagactcctgctcatcc	7	18	2	3			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	140984787	140984787	C	A	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.1243	p.P415T	0.006	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	50	0	0	36	9	20	-	-	-	A	140984787	C	A	140984787	3	1	341	1	0	0	0	0	1	0	0	0	9253	855	30	2	1498	2	MAGEC3	23	140984787	Missense_Mutation	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	4335752	140984787	14285773	915	37474										
SLC6A8	0	genome.wustl.edu	37	chrX	152955960	152955960	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	aacatctgtcccctgttcaaAggtgagcagcccttggccag	10	13	2	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	152955960	152955960	A	T	SNP	SLC6A8	ENST00000253122	human	ensembl	69_37n	1	known	missense	c.393	p.K131N	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine	-	no_errors	SLC6A8	HGNC	ENSG00000130821	193	0	0	230	40	14.81	-	-	-	T	152955960	A	T	152955960	3	4	341	1	0	0	0	0	1	0	0	0	14779	86	3	5	399	5	SLC6A8	23	152955960	Missense_Mutation	SNP	A	TCGA-AO-A128-01A-11D-A10M-09	11971173	152955960	2314600	916	37475										
PLXNB3	0	genome.wustl.edu	37	chrX	153036043	153036043	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcccgcagagtagccactgCgtgtacggagagcactgccc	13	14	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	153036043	153036043	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	silent	c.2025	p.C675	0.003	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	110	0	0	112	25	18.12	-	-	-	T	153036043	C	T	153036043	2	4	341	1	0	0	0	0	0	0	0	1	12199	776	27	1		1	PLXNB3	23	153036043	Silent	SNP	C	TCGA-AO-A128-01A-11D-A10M-09	80083	153036043	2234517	917	37476										
PLXNB3	0	genome.wustl.edu	37	chrX	153039724	153039724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tgcctggtgaagacgctcacGcgcacccacctgtactgcga	11	15	1	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	153039724	153039724	G	A	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	silent	c.3672	p.T1224	0.723	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	19	0	0	21	6	22.22	-	-	-	A	153039724	G	A	153039724	2	1	341	1	0	0	0	0	0	0	0	1	12199	1074	38	1		1	PLXNB3	23	153039724	Silent	SNP	G	TCGA-AO-A128-01A-11D-A10M-09	3681	153039724	2230836	918	37477										
FLNA	0	genome.wustl.edu	37	chrX	153583246	153583246	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	gccaccaaagcgcacacagaTgacgtatttgcccggctggg	12	13	0	2			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	153583246	153583246	T	C	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.5164	p.I1722V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	126	0	0	177	31	14.9	-	-	-	C	153583246	T	C	153583246	3	2	341	1	0	0	0	0	1	0	0	0	5979	1464	51	5	2851	5	FLNA	23	153583246	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	543522	153583246	1687314	919	37478										
FLNA	0	genome.wustl.edu	37	chrX	153585990	153585990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0253583241455347	23	1	0.43301815553348	3.15585514440433	0.278530950491162	0.297407970089876	0.930327025915261	0	tcttcggcttgccttcgggaTcctgtgtggcagaggcaggg	16	10	1	1			TCGA-AO-A128-01A-11D-A10M-09	TCGA-AO-A128-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	46ae2a1c-e694-4a86-b127-e6fbaa676b69	cf7bd3e2-fe1d-43bc-a1dd-14197984162e	X	153585990	153585990	T	C	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.4757	p.D1586G	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	472	0	0	576	85	12.8	-	-	-	C	153585990	T	C	153585990	3	2	341	1	0	0	0	0	1	0	0	0	5979	1449	50	5	3266	5	FLNA	23	153585990	Missense_Mutation	SNP	T	TCGA-AO-A128-01A-11D-A10M-09	2744	153585990	1684570	920	37479										
PRAMEF2	0	genome.wustl.edu	37	chr1	12919596	12919596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cgggatgttgatgagaatttCtgggccagatggcctggagc	16	7	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	12919596	12919596	C	T	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	silent	c.336	p.F112	0.062	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	176	0	0	81	48	37.21	-	-	-	T	12919596	C	T	12919596	2	4	342	1	0	0	0	0	0	0	0	1	12513	912	32	2		2	PRAMEF2	1	12919596	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		12919596	236331025	1	37480										
NR0B2	0	genome.wustl.edu	37	chr1	27238463	27238463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tggaggccgtgaggaggacaCgggtcaggcggccttgggct	20	9	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	27238463	27238463	C	T	SNP	NR0B2	ENST00000254227	human	ensembl	69_37n	-1	known	missense	c.647	p.R216H	0.529	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B2	HGNC	ENSG00000131910	132	0	0	93	24	20.51	-	-	-	T	27238463	C	T	27238463	3	4	342	1	0	0	0	0	1	0	0	0	10687	536	19	1	130	1	NR0B2	1	27238463	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	14318867	27238463	222012158	2	37481										
LPHN2	0	genome.wustl.edu	37	chr1	82416781	82416781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cttagcaactgtacctcacaCtgggtgaatcagctggctca	9	12	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	82416781	82416781	C	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.1572	p.H524Q	1.000	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	96	0	0	101	22	17.89	-	-	-	A	82416781	C	A	82416781	3	1	342	1	0	0	0	0	1	0	0	0	8982	564	20	4	1594	4	LPHN2	1	82416781	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	55178318	82416781	166833840	3	37482										
SYDE2	0	genome.wustl.edu	37	chr1	85624636	85624636	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tacttctggcccatccatttTgctataattttctccgattt	4	11	2	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	85624636	85624636	T	C	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	missense	c.3382	p.K1128E	0.080	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	239	0	0	180	23	11.33	-	-	-	C	85624636	T	C	85624636	3	2	342	1	0	0	0	0	1	0	0	0	15528	1821	63	5	206	5	SYDE2	1	85624636	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	3207855	85624636	163625985	4	37483										
HFM1	0	genome.wustl.edu	37	chr1	91784682	91784682	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gcagagagttttcccaaagtTtacacctaaaacatttagct	6	9	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	91784682	91784682	T	A	SNP	HFM1	ENST00000370425	human	ensembl	69_37n	-1	known	missense	c.2765	p.K922I	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669	116	0	0	107	17	13.71	-	-	-	A	91784682	T	A	91784682	3	1	342	1	0	0	0	0	1	0	0	0	7134	1841	64	5	1602	5	HFM1	1	91784682	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	6160046	91784682	157465939	5	37484										
FLG	0	genome.wustl.edu	37	chr1	152275739	152275739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctcagatcgcctctcagagtCctctgggtatgcctcactgt	9	14	4	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	152275739	152275739	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.11623	p.D3875Y	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	236	0	0	328	60	15.46	-	-	-	A	152275739	C	A	152275739	3	1	342	1	0	0	0	0	1	0	0	0	5968	855	30	2	566	2	FLG	1	152275739	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	60491057	152275739	96974882	6	37485										
TNN	0	genome.wustl.edu	37	chr1	175067625	175067625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ccggtggggaaggagcagagCagcacagtcctgacaggcct	16	11	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	175067625	175067625	C	T	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	silent	c.2013	p.S671	0.139	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	93	0	0	88	34	27.42	-	-	-	T	175067625	C	T	175067625	2	4	342	1	0	0	0	0	0	0	0	1	16418	709	25	4		4	TNN	1	175067625	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	22791886	175067625	74182996	7	37486										
CACNA1S	0	genome.wustl.edu	37	chr1	201079345	201079345	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cggcatgggcaggtacacggCcagggccacacaattggcaa	14	12	0	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	201079345	201079345	C	A	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.205	p.A69S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	114	0	0	139	63	31.19	-	-	-	A	201079345	C	A	201079345	3	1	342	1	0	0	0	0	1	0	0	0	2572	739	26	4	5588	4	CACNA1S	1	201079345	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	26011720	201079345	48171276	8	37487										
ELF3	0	genome.wustl.edu	37	chr1	201984385	201984385	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cgggtggatggccggcgactCgtctacaagtttggcaaaaa	14	9	1	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	201984385	201984385	C	G	SNP	ELF3	ENST00000359651	human	ensembl	69_37n	1	known	silent	c.1050	p.L350	0.273	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF3	HGNC	ENSG00000163435	103	0	0	85	42	33.07	-	-	-	G	201984385	C	G	201984385	2	3	342	1	0	0	0	0	0	0	0	1	5092	871	31	3		3	ELF3	1	201984385	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	905040	201984385	47266236	9	37488										
SIPA1L2	0	genome.wustl.edu	37	chr1	232581367	232581367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tgttggcacggcagccggtcGggcgtgccggggatggggga	22	9	0	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	232581367	232581367	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	silent	c.3261	p.P1087	0.797	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	40	0	0	72	20	21.74	-	-	-	A	232581367	G	A	232581367	2	1	342	1	0	0	0	0	0	0	0	1	14419	1103	39	1		1	SIPA1L2	1	232581367	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	30596982	232581367	16669254	10	37489										
ACTN2	0	genome.wustl.edu	37	chr1	236925894	236925894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ttacgctgcgttctcttccgCactctacggggagagcgatc	11	13	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	236925894	236925894	C	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.2660	p.A887E	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	53	0	0	68	22	24.44	-	-	-	A	236925894	C	A	236925894	3	1	342	1	0	0	0	0	1	0	0	0	205	710	25	4	2742	4	ACTN2	1	236925894	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	4344527	236925894	12324727	11	37490										
OR2T11	0	genome.wustl.edu	37	chr1	248789657	248789657	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gggtgtggaaggactggggcAgcacgtatgtgtagaaggca	19	5	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	1	248789657	248789657	A	G	SNP	OR2T11	ENST00000330803	human	ensembl	69_37n	-1	known	missense	c.773	p.L258P	0.026	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130	61	0	0	111	13	10.48	-	-	-	G	248789657	A	G	248789657	3	3	342	1	0	0	0	0	1	0	0	0	11091	188	7	5	181	5	OR2T11	1	248789657	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	11863763	248789657	460964	12	37491										
TP53I3	0	genome.wustl.edu	37	chr2	24303814	24303814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctgtgaccagaggaatagctCcagccatccgggtgagttgg	14	10	0	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	24303814	24303814	C	T	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	missense	c.494	p.G165E	0.061	pfam_ADH_C,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	123	0	0	119	15	11.19	-	-	-	T	24303814	C	T	24303814	3	4	342	1	0	0	0	0	1	0	0	0	16483	855	30	2	516	2	TP53I3	2	24303814	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		24303814	218895559	13	37492										
BCL11A	0	genome.wustl.edu	37	chr2	60689460	60689460	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gttcgctttctaagtagattCttaatccatgagtgttctgt	8	7	3	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	60689460	60689460	C	G	SNP	BCL11A	ENST00000335712	human	ensembl	69_37n	-1	known	missense	c.587	p.R196T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866	97	0	0	72	24	25	-	-	-	G	60689460	C	G	60689460	3	3	342	1	0	0	0	0	1	0	0	0	1367	913	32	2	2030	2	BCL11A	2	60689460	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	36385646	60689460	182509913	14	37493										
MEIS1	0	genome.wustl.edu	37	chr2	66664937	66664937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tccacgatgtatggggacccGcatgcagccaggtccatgca	12	13	0	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	66664937	66664937	G	A	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	silent	c.81	p.P27	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	69	0	0	50	9	15.25	-	-	-	A	66664937	G	A	66664937	2	1	342	1	0	0	0	0	0	0	0	1	9538	1074	38	1		1	MEIS1	2	66664937	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	5975477	66664937	176534436	15	37494										
IL18R1	0	genome.wustl.edu	37	chr2	102988435	102988435	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	attatactcagaaatggaaaTtaaatgtcatcagaagaaat	6	4	3	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	102988435	102988435	T	C	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	1	known	silent	c.325	p.L109	0.024	smart_Ig_sub	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	44	0	0	34	8	19.05	-	-	-	C	102988435	T	C	102988435	2	2	342	1	0	0	0	0	0	0	0	1	7701	1490	52	5		5	IL18R1	2	102988435	Silent	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	36323498	102988435	140210938	16	37495										
SCN2A	0	genome.wustl.edu	37	chr2	166201296	166201296	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tgcatgactttttccactccTtcctgatcgtgttccgcgtg	8	13	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	166201296	166201296	T	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.2794	p.F932I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	315	0	0	276	64	18.82	-	-	-	A	166201296	T	A	166201296	3	1	342	1	0	0	0	0	1	0	0	0	14004	1609	56	5	2948	5	SCN2A	2	166201296	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	63212861	166201296	76998077	17	37496										
ABCA12	0	genome.wustl.edu	37	chr2	215831626	215831626	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tcgcagaaggaaattattcaGgctgttgaggtaagctggaa	13	5	1	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	2	215831626	215831626	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	silent	c.5830	p.L1944	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	262	0	0	190	38	16.67	-	-	-	A	215831626	G	A	215831626	2	1	342	1	0	0	0	0	0	0	0	1	30	991	35	4		4	ABCA12	2	215831626	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	49630330	215831626	27367747	18	37497										
LAMB2	0	genome.wustl.edu	37	chr3	49162717	49162717	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctcaccccctgtgtgatcacGgcagcccaggcaagcgcctg	11	17	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	3	49162717	49162717	G	C	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.2689	p.R897G	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	37	0	0	29	11	27.5	-	-	-	C	49162717	G	C	49162717	3	2	342	1	0	0	0	0	1	0	0	0	8665	1116	39	3	2763	3	LAMB2	3	49162717	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09		49162717	148859713	19	37498										
RNF13	0	genome.wustl.edu	37	chr3	149619889	149619889	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aaagaaaattgacattccatCtgtctttattggtgaatcat	6	6	3	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	3	149619889	149619889	C	T	SNP	RNF13	ENST00000344229	human	ensembl	69_37n	1	known	missense	c.440	p.S147F	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF13	HGNC	ENSG00000082996	80	0	0	50	9	15.25	-	-	-	T	149619889	C	T	149619889	3	4	342	1	0	0	0	0	1	0	0	0	13523	913	32	2	458	2	RNF13	3	149619889	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	100457172	149619889	48402541	20	37499										
ENAM	0	genome.wustl.edu	37	chr4	71500244	71500244	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ggcctttgaagcagccatcaCataatcaacctcagcccgaa	7	14	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	4	71500244	71500244	C	A	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.430	p.H144N	0.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	143	0	0	55	29	34.52	-	-	-	A	71500244	C	A	71500244	3	1	342	1	0	0	0	0	1	0	0	0	5149	478	17	4	448	4	ENAM	4	71500244	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		71500244	119654032	21	37500										
IL6ST	0	genome.wustl.edu	37	chr5	55237028	55237028	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tttctacttgtccctcagtaCctggaccaaaagcatctgct	6	13	3	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	5	55237028	55237028	C	G	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.2639	p.G880A	0.000	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	76	0	0	50	6	10.71	-	-	-	G	55237028	C	G	55237028	3	3	342	1	0	0	0	0	1	0	0	0	7757	507	18	4	121	4	IL6ST	5	55237028	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		55237028	125678232	22	37501										
IQGAP2	0	genome.wustl.edu	37	chr5	75993917	75993917	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aggcagcattttatgaagagCaaatcaattattatgacacc	7	7	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	5	75993917	75993917	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	nonsense	c.4312	p.Q1438*	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	88	0	0	46	19	29.23	-	-	-	T	75993917	C	T	75993917	4	4	342	1	0	0	0	0	0	1	0	0	7869	711	25	4	4442	4	IQGAP2	5	75993917	Nonsense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	20756889	75993917	104921343	23	37502										
DAXX	0	genome.wustl.edu	37	chr6	33288193	33288193	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gaggcttcgggggtgtctgcAgagtgggaagaggtgccttg	20	6	1	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	6	33288193	33288193	A	G	SNP	DAXX	ENST00000266000	human	ensembl	69_37n	-1	known	silent	c.1215	p.S405	0.003	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	74	0	0	74	15	16.85	-	-	-	G	33288193	A	G	33288193	2	3	342	1	0	0	0	0	0	0	0	1	4275	175	7	5		5	DAXX	6	33288193	Silent	SNP	A	TCGA-AO-A129-01A-21D-A10M-09		33288193	137826874	24	37503										
TMEM63B	0	genome.wustl.edu	37	chr6	44119646	44119646	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gtcattgcctcagcctttatCggcaacgccatggacctgct	9	14	2	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	6	44119646	44119646	C	T	SNP	TMEM63B	ENST00000533121	human	ensembl	69_37n	1	known	missense	c.1183	p.R395W	1.000	pfam_DUF221	pfam_DUF221	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM63B	HGNC	ENSG00000137216	39	0	0	55	21	27.63	-	-	-	T	44119646	C	T	44119646	3	4	342	1	0	0	0	0	1	0	0	0	16286	874	31	1	1807	1	TMEM63B	6	44119646	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	10831453	44119646	126995421	25	37504										
TRAM2	0	genome.wustl.edu	37	chr6	52370475	52370475	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gagccagtccaaagccaatgGccagcacggcaagggtgagg	15	11	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	6	52370475	52370475	G	C	SNP	TRAM2	ENST00000182527	human	ensembl	69_37n	-1	known	missense	c.797	p.A266G	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308	103	0	0	80	64	44.44	-	-	-	C	52370475	G	C	52370475	3	2	342	1	0	0	0	0	1	0	0	0	16549	1203	42	4	327	4	TRAM2	6	52370475	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	8250829	52370475	118744592	26	37505										
SLC22A3	0	genome.wustl.edu	37	chr6	160858230	160858230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gtggcatgccttgtcactgcGttcttaccagaaggtaatct	10	10	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	6	160858230	160858230	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	69_37n	1	known	silent	c.1275	p.A425	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477	67	0	0	57	11	16.18	-	-	-	A	160858230	G	A	160858230	2	1	342	1	0	0	0	0	0	0	0	1	14544	1132	40	1		1	SLC22A3	6	160858230	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	108487755	160858230	10256837	27	37506										
IGF2BP3	0	genome.wustl.edu	37	chr7	23352363	23352363	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	agcccacttgcctggcaagcAtagaagtgaccagttatttt	9	10	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	23352363	23352363	A	G	SNP	IGF2BP3	ENST00000258729	human	ensembl	69_37n	-1	known	silent	c.1632	p.Y544	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231	124	0	0	94	17	15.18	-	-	-	G	23352363	A	G	23352363	2	3	342	1	0	0	0	0	0	0	0	1	7629	224	8	5		5	IGF2BP3	7	23352363	Silent	SNP	A	TCGA-AO-A129-01A-21D-A10M-09		23352363	135786300	28	37507										
CCDC126	0	genome.wustl.edu	37	chr7	23682551	23682551	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ttctgatttattcccctagcGgatctgaaaagaacaattgc	7	9	2	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	23682551	23682551	G	A	SNP	CCDC126	ENST00000307471	human	ensembl	69_37n	1	known	silent	c.240	p.A80	1.000	NULL	NULL	-	no_errors	CCDC126	HGNC	ENSG00000169193	148	0	0	78	35	30.97	-	-	-	A	23682551	G	A	23682551	2	1	342	1	0	0	0	0	0	0	0	1	2787	1130	39	1		1	CCDC126	7	23682551	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	330188	23682551	135456112	29	37508										
ABCA13	0	genome.wustl.edu	37	chr7	48349591	48349591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctgtctggaaagtgtgatcaGgaaatccttcatctcctgct	9	10	4	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	48349591	48349591	G	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.9369	p.Q3123H	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	199	0	0	177	30	14.42	-	-	-	T	48349591	G	T	48349591	3	4	342	1	0	0	0	0	1	0	0	0	31	991	35	4	9292	4	ABCA13	7	48349591	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	24667040	48349591	110789072	30	37509										
ATXN7L1	0	genome.wustl.edu	37	chr7	105254792	105254792	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	agtggagacgagagggatgtCtgcaaggaagaggaggagga	20	3	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	105254792	105254792	C	G	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	missense	c.1989	p.Q663H	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	358	0	0	243	48	16.49	-	-	-	G	105254792	C	G	105254792	3	3	342	1	0	0	0	0	1	0	0	0	1220	912	32	2	611	2	ATXN7L1	7	105254792	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	56905201	105254792	53883871	31	37510										
PTPRZ1	0	genome.wustl.edu	37	chr7	121652195	121652195	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tgaatttacatatacaacatCtgtgtttggtgatgataata	7	4	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	121652195	121652195	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.3095	p.S1032F	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	117	0	0	46	15	24.59	-	-	-	T	121652195	C	T	121652195	3	4	342	1	0	0	0	0	1	0	0	0	12897	913	32	2	3141	2	PTPRZ1	7	121652195	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	16397403	121652195	37486468	32	37511										
FAM115A	0	genome.wustl.edu	37	chr7	143573445	143573445	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	caatgggagccccaggggaaGagcaaagccaccccactgcg	13	14	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	7	143573445	143573445	G	C	SNP	FAM115A	ENST00000479870	human	ensembl	69_37n	-1	known	missense	c.257	p.S86C	0.861	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420	36	0	0	46	10	17.86	-	-	-	C	143573445	G	C	143573445	3	2	342	1	0	0	0	0	1	0	0	0	5445	942	33	2	2540	2	FAM115A	7	143573445	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	21921250	143573445	15565218	33	37512										
CSMD1	0	genome.wustl.edu	37	chr8	3000129	3000129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	atggggctggtgtggtaaggTccattttgaatttcaaggaa	14	4	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	3000129	3000129	T	G	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.4540	p.T1514P	0.001	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	245	1	0.41	145	36	19.89	-	-	-	G	3000129	T	G	3000129	3	3	342	1	0	0	0	0	1	0	0	0	3976	1654	58	5	4715	5	CSMD1	8	3000129	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09		3000129	143363893	34	37513										
PROSC	0	genome.wustl.edu	37	chr8	37635577	37635577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aaacccaccccggacaagtgCgcagcagacgtgaaggcccc	11	16	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	37635577	37635577	C	T	SNP	PROSC	ENST00000521494	human	ensembl	69_37n	1	putative	missense	c.689	p.A230V	0.000	NULL	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PROSC	HGNC	ENSG00000147471	80	0	0	57	12	17.39	-	-	-	T	37635577	C	T	37635577	3	4	342	1	0	0	0	0	1	0	0	0	12640	776	27	1	813	1	PROSC	8	37635577	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	34635448	37635577	108728445	35	37514										
ZFHX4	0	genome.wustl.edu	37	chr8	77761274	77761274	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctaaaagttagtgtggcaggGggtacccagccactcctgct	12	11	0	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	77761274	77761274	G	C	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.3555	p.G1185	0.991	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	65	0	0	92	12	11.54	-	-	-	C	77761274	G	C	77761274	2	2	342	1	0	0	0	0	0	0	0	1	17731	1219	43	4		4	ZFHX4	8	77761274	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	40125697	77761274	68602748	36	37515										
VPS13B	0	genome.wustl.edu	37	chr8	100866232	100866232	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	actccacacacctctccgggGgtaaacaggtgttgcccatg	10	14	1	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	100866232	100866232	G	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.10690	p.G3564R	0.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	72	0	0	69	18	20.69	-	-	-	C	100866232	G	C	100866232	3	2	342	1	0	0	0	0	1	0	0	0	17287	1232	43	4	11102	4	VPS13B	8	100866232	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	23104958	100866232	45497790	37	37516										
DPYS	0	genome.wustl.edu	37	chr8	105441860	105441860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ggtgggctgcatggtgccatTctttattccagtagtgagtg	14	7	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	105441860	105441860	T	C	SNP	DPYS	ENST00000351513	human	ensembl	69_37n	-1	known	missense	c.863	p.E288G	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647	110	0	0	111	45	28.85	-	-	-	C	105441860	T	C	105441860	3	2	342	1	0	0	0	0	1	0	0	0	4781	1783	62	5	716	5	DPYS	8	105441860	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	4575628	105441860	40922162	38	37517										
KCNQ3	0	genome.wustl.edu	37	chr8	133150245	133150245	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tccttgaatttttttttataGagacggaattgtagaattct	7	4	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	8	133150245	133150245	G	C	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	63	0	0	37	57	60.64	-	-	-	C	133150245	G	C	133150245	2	2	342	1	0	0	0	0	0	0	0	1	8138	929	33	2		2	KCNQ3	8	133150245	Silent	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	27708385	133150245	13213777	39	37518										
FRMPD2	0	genome.wustl.edu	37	chr10	49452893	49452893	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cctaaagaatagacatgcatCtgcccaaaagaagagtacat	7	9	1	4			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	10	49452893	49452893	C	G	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	splice_site	c.310-1	e4-1	0.964	-	-	-	no_errors	FRMPD2	HGNC	ENSG00000170324	91	0	0	62	20	24.39	-	-	-	G	49452893	C	G	49452893	5	3	342	1	0	0	0	0	0	0	1	0	6107	927	32	2	3724	2	FRMPD2	10	49452893	Splice_Site	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		49452893	86081854	40	37519										
ZNF365	0	genome.wustl.edu	37	chr10	64136169	64136169	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	catccctcaaagacacagacCtagtcacttcctcagaactc	4	16	3	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	10	64136169	64136169	C	A	SNP	ZNF365	ENST00000410046	human	ensembl	69_37n	1	known	missense	c.217	p.L73I	1.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	148	0	0	121	29	19.33	-	-	-	A	64136169	C	A	64136169	3	1	342	1	0	0	0	0	1	0	0	0	17965	680	24	4	219	4	ZNF365	10	64136169	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	14683276	64136169	71398578	41	37520										
HNRNPH3	0	genome.wustl.edu	37	chr10	70097706	70097706	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gtgcagtttgcttcaaaggaGatagcagaaaatgctctggg	13	6	2	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	10	70097706	70097706	G	C	SNP	HNRNPH3	ENST00000265866	human	ensembl	69_37n	1	known	missense	c.204	p.E68D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746	254	0	0	221	29	11.55	-	-	-	C	70097706	G	C	70097706	3	2	342	1	0	0	0	0	1	0	0	0	7319	933	33	2	210	2	HNRNPH3	10	70097706	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	5961537	70097706	65437041	42	37521										
CWF19L1	0	genome.wustl.edu	37	chr10	102003460	102003460	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aaggaagtaactcacatgtgTgccgatgttgaccaccaaat	9	9	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	10	102003460	102003460	T	C	SNP	CWF19L1	ENST00000354105	human	ensembl	69_37n	-1	known	missense	c.1039	p.T347A	1.000	pfam_Cwf19-like_C_dom-1,superfamily_HIT-like	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485	176	0	0	123	16	11.43	-	-	-	C	102003460	T	C	102003460	3	2	342	1	0	0	0	0	1	0	0	0	4102	1696	59	5	597	5	CWF19L1	10	102003460	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	31905754	102003460	33531287	43	37522										
OR52R1	0	genome.wustl.edu	37	chr11	4825512	4825512	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	acagcatacgtggcacagaaCggaaaggcaatccacaactg	10	11	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	4825512	4825512	C	T	SNP	OR52R1	ENST00000380382	human	ensembl	69_37n	-1	known	silent	c.336	p.P112	0.034	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937	121	0	0	89	37	29.37	-	-	-	T	4825512	C	T	4825512	2	4	342	1	0	0	0	0	0	0	0	1	11204	523	19	1		1	OR52R1	11	4825512	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		4825512	130181004	44	37523										
SYT9	0	genome.wustl.edu	37	chr11	7334807	7334807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cttgtgggaaactgaacttcAttttaaaatatgactgtgac	8	6	1	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	7334807	7334807	A	G	SNP	SYT9	ENST00000318881	human	ensembl	69_37n	1	known	missense	c.679	p.I227V	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743	184	0	0	112	50	30.86	-	-	-	G	7334807	A	G	7334807	3	3	342	1	0	0	0	0	1	0	0	0	15573	217	8	5	689	5	SYT9	11	7334807	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	2509295	7334807	127671709	45	37524										
FOLH1	0	genome.wustl.edu	37	chr11	49175795	49175795	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cataccaaatgatacactgtAtgtcttcatttcctgtggat	6	9	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	49175795	49175795	A	C	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.1873	p.Y625D	0.885	superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	269	1	0.37	173	27	13.43	-	-	-	C	49175795	A	C	49175795	3	2	342	1	0	0	0	0	1	0	0	0	6025	449	16	5	395	5	FOLH1	11	49175795	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	41840988	49175795	85830721	46	37525										
RNF169	0	genome.wustl.edu	37	chr11	74546847	74546847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	caagagactccctgatggccGtgtgctaagtcctctcatca	9	13	2	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	74546847	74546847	G	A	SNP	RNF169	ENST00000299563	human	ensembl	69_37n	1	known	missense	c.1199	p.R400H	0.997	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	97	0	0	78	22	22	-	-	-	A	74546847	G	A	74546847	3	1	342	1	0	0	0	0	1	0	0	0	13546	1145	40	1	1221	1	RNF169	11	74546847	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	25371052	74546847	60459669	47	37526										
ATM	0	genome.wustl.edu	37	chr11	108106472	108106472	+	Frame_Shift_Del	DEL	T	T	-													0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	agattcatctaatggtgctaTttacggagctgattgtagca							TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	108106472	108106472	T	-	DEL	ATM	ENST00000278616	human	ensembl	69_37n	1	known	frame_shift_del	c.407	p.Y137fs	0.013	pfam_TAN	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	302	0	0	189	24	11.16	-	-	-	-	108106472	T	-	108106472	7	5	342	1	0	1	0	1	0	0	0	0	1113	1493	52	0	421	0	ATM	11	108106472	Frame_Shift_Del	DEL	T	TCGA-AO-A129-01A-21D-A10M-09	33559625	108106472	26900044	48	37527										
ANKK1	0	genome.wustl.edu	37	chr11	113269799	113269799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tcacccccctccacttcctgGtggcccagggcagtgtggag	12	16	1	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	113269799	113269799	G	A	SNP	ANKK1	ENST00000303941	human	ensembl	69_37n	1	known	missense	c.1108	p.V370M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ANKK1	HGNC	ENSG00000170209	73	0	0	60	14	18.92	-	-	-	A	113269799	G	A	113269799	3	1	342	1	0	0	0	0	1	0	0	0	631	1261	44	4	1138	4	ANKK1	11	113269799	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	5163327	113269799	21736717	49	37528										
PHLDB1	0	genome.wustl.edu	37	chr11	118516531	118516531	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	catgcagagaagaaccggctCatggagtcgagggtgagtct	15	8	2	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	11	118516531	118516531	C	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	silent	c.3495	p.L1165	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	171	0	0	168	21	11.11	-	-	-	A	118516531	C	A	118516531	2	1	342	1	0	0	0	0	0	0	0	1	11925	813	29	2		2	PHLDB1	11	118516531	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	5246732	118516531	16489985	50	37529										
C12orf36	0	genome.wustl.edu	37	chr12	13529254	13529254	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aaatagtggagcatgaagtgTcttcatcaggaacacacaga	10	7	3	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	12	13529254	13529254	T	C	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	missense	c.86	p.D29G	0.009	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	155	0	0	172	23	11.79	-	-	-	C	13529254	T	C	13529254	3	2	342	1	0	0	0	0	1	0	0	0	1695	1667	58	5	338	5	C12orf36	12	13529254	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09		13529254	120322641	51	37530										
C13orf35	0	genome.wustl.edu	37	chr13	113333794	113333794	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tgcctgggcctcttccctgaAgatggacccggcaggtctgg	14	13	2	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	13	113333794	113333794	A	G	SNP	C13orf35	ENST00000356049	human	ensembl	69_37n	1	putative	missense	c.101	p.K34R	0.001	NULL	NULL	-	no_errors	C13orf35	HGNC	ENSG00000197595	37	0	0	57	15	20.83	-	-	-	G	113333794	A	G	113333794	3	3	342	1	0	0	0	0	1	0	0	0	1741	72	3	5	103	5	C13orf35	13	113333794	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09		113333794	1836084	52	37531										
OR4K13	0	genome.wustl.edu	37	chr14	20502724	20502724	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tcatatcaatgcaggagaggTtgctaagcagaaaatacatt	9	6	2	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	14	20502724	20502724	T	G	SNP	OR4K13	ENST00000315693	human	ensembl	69_37n	-1	known	missense	c.194	p.N65T	0.072	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K13	HGNC	ENSG00000176253	133	0	0	92	18	16.36	-	-	-	G	20502724	T	G	20502724	3	3	342	1	0	0	0	0	1	0	0	0	11141	1725	60	5	722	5	OR4K13	14	20502724	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09		20502724	86846816	53	37532										
LTBP2	0	genome.wustl.edu	37	chr14	74972814	74972814	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctcctccaggtcactggcacAgaggcacaggaaggagccct	12	14	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	14	74972814	74972814	A	C	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.4114	p.C1372G	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	45	0	0	34	17	33.33	-	-	-	C	74972814	A	C	74972814	3	2	342	1	0	0	0	0	1	0	0	0	9140	188	7	5	1387	5	LTBP2	14	74972814	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	54470090	74972814	32376726	54	37533										
SMEK1	0	genome.wustl.edu	37	chr14	91948389	91948389	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gaagaggtgaaggtaaagatGatgccacaagttctgcaatt	12	5	1	4			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	14	91948389	91948389	G	A	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	missense	c.446	p.S149L	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	104	0	0	56	16	22.22	-	-	-	A	91948389	G	A	91948389	3	1	342	1	0	0	0	0	1	0	0	0	14882	1294	45	2	2064	2	SMEK1	14	91948389	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	16975575	91948389	15401151	55	37534										
OTUD7A	0	genome.wustl.edu	37	chr15	31776741	31776741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gctgcccagcttgttggccaCggagtcggcgcgcgtcttgt	15	13	1	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	15	31776741	31776741	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.1558	p.V520M	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	113	0	0	85	13	13.27	-	-	-	T	31776741	C	T	31776741	3	4	342	1	0	0	0	0	1	0	0	0	11391	536	19	1	1247	1	OTUD7A	15	31776741	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		31776741	70754651	56	37535										
GATM	0	genome.wustl.edu	37	chr15	45658607	45658607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aatatctcttccagctcgaaTgaagtcagcagcatcaaagc	7	11	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	15	45658607	45658607	T	A	SNP	GATM	ENST00000396659	human	ensembl	69_37n	-1	known	missense	c.775	p.I259F	1.000	NULL	NULL	-	no_errors	GATM	HGNC	ENSG00000171766	126	0	0	74	14	15.91	-	-	-	A	45658607	T	A	45658607	3	1	342	1	0	0	0	0	1	0	0	0	6313	1464	51	5	516	5	GATM	15	45658607	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09	13881866	45658607	56872785	57	37536										
ZP2	0	genome.wustl.edu	37	chr16	21209118	21209118	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	acctcctcccctgtttcactCctactcttctccccactgct	2	21	3	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	16	21209118	21209118	C	G	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	missense	c.2064	p.R688S	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	328	1	0.3	317	45	12.43	-	-	-	G	21209118	C	G	21209118	3	3	342	1	0	0	0	0	1	0	0	0	18309	854	30	2	181	2	ZP2	16	21209118	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		21209118	69145635	58	37537										
WDR81	0	genome.wustl.edu	37	chr17	1630415	1630415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tgaggaggggaggattcttcTtcccgagggcttcaatccca	13	10	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	1630415	1630415	T	G	SNP	WDR81	ENST00000409644	human	ensembl	69_37n	1	known	missense	c.2162	p.L721R	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	22	0	0	22	8	25.81	-	-	-	G	1630415	T	G	1630415	3	3	342	1	0	0	0	0	1	0	0	0	17427	1609	56	5	2226	5	WDR81	17	1630415	Missense_Mutation	SNP	T	TCGA-AO-A129-01A-21D-A10M-09		1630415	79564795	59	37538										
USP6	0	genome.wustl.edu	37	chr17	5036239	5036239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gatgacacgaacgagcaagtGgatggaaatgctgggagaat	15	5	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	5036239	5036239	G	T	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	missense	c.230	p.W77L	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	248	1	0.4	219	35	13.78	-	-	-	T	5036239	G	T	5036239	3	4	342	1	0	0	0	0	1	0	0	0	17183	1357	47	4	244	4	USP6	17	5036239	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	3405824	5036239	76158971	60	37539										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	65	0	0	34	23	40.35	-	-	-	T	7578406	C	T	7578406	3	4	342	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	2542167	7578406	73616804	61	37540										
MYH13	0	genome.wustl.edu	37	chr17	10243510	10243510	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	atcagacatcgtacaaagtgAgggtgggtgctccttaagtt	12	7	1	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	10243510	10243510	A	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	silent	c.2013	p.P671	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	214	0	0	168	21	11.11	-	-	-	T	10243510	A	T	10243510	2	4	342	1	0	0	0	0	0	0	0	1	10104	291	11	5		5	MYH13	17	10243510	Silent	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	2665104	10243510	70951700	62	37541										
AARSD1	0	genome.wustl.edu	37	chr17	41113324	41113324	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gcctgttccccacggcgagtCactctcagcacagagatgtc	10	15	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	41113324	41113324	C	G	SNP	AARSD1	ENST00000452752	human	ensembl	69_37n	-1	putative	missense	c.523	p.D175H	1.000	pfam_Ala-tRNA-synth_IIc_N	pfam_Ala-tRNA-synth_IIc_N,superfamily_HSP20-like_chaperone	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AARSD1	HGNC	ENSG00000108825	116	0	0	87	10	10.31	-	-	-	G	41113324	C	G	41113324	3	3	342	1	0	0	0	0	1	0	0	0	21	813	29	2	1062	2	AARSD1	17	41113324	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	30869814	41113324	40081886	63	37542										
HOXB8	0	genome.wustl.edu	37	chr17	46690618	46690618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tccgccgcctctggggcccgCtccagcttctgtttctccag	10	18	3	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	46690618	46690618	C	A	SNP	HOXB8	ENST00000239144	human	ensembl	69_37n	-1	known	missense	c.678	p.E226D	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_HTH_motif,pfscan_Homeodomain	-	no_errors	HOXB8	HGNC	ENSG00000120068	138	0	0	87	17	16.35	-	-	-	A	46690618	C	A	46690618	3	1	342	1	0	0	0	0	1	0	0	0	7358	796	28	4	57	4	HOXB8	17	46690618	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	5577294	46690618	34504592	64	37543										
TEX14	0	genome.wustl.edu	37	chr17	56688647	56688647	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tatctcagggcatcagatatCtggagcagcaggtgcacaat	11	9	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	56688647	56688647	C	T	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	silent	c.1077	p.Q359	0.944	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	74	0	0	52	7	11.86	-	-	-	T	56688647	C	T	56688647	2	4	342	1	0	0	0	0	0	0	0	1	15873	912	32	2		2	TEX14	17	56688647	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	9998029	56688647	24506563	65	37544										
EIF4A3	0	genome.wustl.edu	37	chr17	78112938	78112938	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tggaggcaggtacctgtataCatcgtaaatctgctctttga	10	8	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	17	78112938	78112938	C	A	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.610	p.V204L	0.999	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	118	0	0	164	26	13.61	-	-	-	A	78112938	C	A	78112938	3	1	342	1	0	0	0	0	1	0	0	0	5063	478	17	4	649	4	EIF4A3	17	78112938	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	21424291	78112938	3082272	66	37545										
MYO1F	0	genome.wustl.edu	37	chr19	8620576	8620576	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tccatgaagcgcttccggagGttggcggcaatggcgtcttc	14	11	1	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	8620576	8620576	G	T	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	missense	c.108	p.N36K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	108	0	0	122	21	14.69	-	-	-	T	8620576	G	T	8620576	3	4	342	1	0	0	0	0	1	0	0	0	10145	1252	44	4	3296	4	MYO1F	19	8620576	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09		8620576	50508407	67	37546										
TMEM38A	0	genome.wustl.edu	37	chr19	16793232	16793232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	agaagcaccctgtcctgtagGttctggtgtcgccctcatgt	11	12	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	16793232	16793232	G	T	SNP	TMEM38A	ENST00000187762	human	ensembl	69_37n	1	known	missense	c.467	p.G156V	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954	134	0	0	128	41	24.26	-	-	-	T	16793232	G	T	16793232	3	4	342	1	0	0	0	0	1	0	0	0	16254	1275	44	4	481	4	TMEM38A	19	16793232	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	8172656	16793232	42335751	68	37547										
ACTN4	0	genome.wustl.edu	37	chr19	39205151	39205151	+	Frame_Shift_Del	DEL	A	A	-													0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tctgtaaggtgctggctgtcAaccaagagaacgagcacctg							TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	39205151	39205151	A	-	DEL	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	frame_shift_del	c.862	p.N288fs	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	54	0	0	59	9	13.24	-	-	-	-	39205151	A	-	39205151	7	5	342	1	0	1	0	1	0	0	0	0	207	130	5	0	896	0	ACTN4	19	39205151	Frame_Shift_Del	DEL	A	TCGA-AO-A129-01A-21D-A10M-09	22411919	39205151	19923832	69	37548										
NCCRP1	0	genome.wustl.edu	37	chr19	39691392	39691392	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cgtgtctgtgcagctccgggAgtgactggctggctcctctg	15	12	2	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	39691392	39691392	A	G	SNP	NCCRP1	ENST00000339852	human	ensembl	69_37n	1	known	missense	c.824	p.E275G	0.976	NULL	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	-	no_errors	NCCRP1	HGNC	ENSG00000188505	35	0	0	25	8	24.24	-	-	-	G	39691392	A	G	39691392	3	3	342	1	0	0	0	0	1	0	0	0	10285	304	11	5	846	5	NCCRP1	19	39691392	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	486241	39691392	19437591	70	37549										
SUPT5H	0	genome.wustl.edu	37	chr19	39957372	39957372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctccacagaggctgtttgatGctgagaagatcaggtgcgtg	14	8	1	4			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	39957372	39957372	G	T	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.1024	p.A342S	1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	90	0	0	49	18	26.87	-	-	-	T	39957372	G	T	39957372	3	4	342	1	0	0	0	0	1	0	0	0	15490	1319	46	4	1070	4	SUPT5H	19	39957372	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	265980	39957372	19171611	71	37550										
MAP3K10	0	genome.wustl.edu	37	chr19	40720993	40720993	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ccctgacctttgccccgagaCctcggccggctgccagtcgc	11	19	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	40720993	40720993	C	G	SNP	MAP3K10	ENST00000253055	human	ensembl	69_37n	1	known	missense	c.2659	p.P887A	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758	15	0	0	5	4	44.44	-	-	-	G	40720993	C	G	40720993	3	3	342	1	0	0	0	0	1	0	0	0	9315	507	18	4	2697	4	MAP3K10	19	40720993	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	763621	40720993	18407990	72	37551										
STRN4	0	genome.wustl.edu	37	chr19	47242077	47242077	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gcatactctagcatcttgatCcgccgcaccaggtccgtctt	8	15	3	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	47242077	47242077	C	T	SNP	STRN4	ENST00000391910	human	ensembl	69_37n	-1	known	silent	c.351	p.R117	1.000	pfam_Striatin_N	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372	205	1	0.48	157	18	10.29	-	-	-	T	47242077	C	T	47242077	2	4	342	1	0	0	0	0	0	0	0	1	15422	842	30	2		2	STRN4	19	47242077	Silent	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	6521084	47242077	11886906	73	37552										
SYT3	0	genome.wustl.edu	37	chr19	51132591	51132591	+	Frame_Shift_Del	DEL	G	G	-													0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ccctccagagcgggcggtcaGggggctgctcggccagctcc							TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	51132591	51132591	G	-	DEL	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	frame_shift_del	c.1241	p.P414fs	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	36	0	0	20	4	16	-	-	-	-	51132591	G	-	51132591	7	5	342	1	0	1	0	1	0	0	0	0	15567	1000	35	0	551	0	SYT3	19	51132591	Frame_Shift_Del	DEL	G	TCGA-AO-A129-01A-21D-A10M-09	3890514	51132591	7996392	74	37553										
ZNF460	0	genome.wustl.edu	37	chr19	57803047	57803047	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tcactcactattccacctatGtcctgcatgaaagagcccac	5	15	2	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	19	57803047	57803047	G	C	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.1138	p.V380L	0.037	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	182	0	0	109	27	19.85	-	-	-	C	57803047	G	C	57803047	3	2	342	1	0	0	0	0	1	0	0	0	18020	1377	48	4	1148	4	ZNF460	19	57803047	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	6670456	57803047	1325936	75	37554										
REM1	0	genome.wustl.edu	37	chr20	30070112	30070112	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	taaaagctggagccaggagtCatgcctgcaggggggcagtg	17	8	1	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	20	30070112	30070112	C	G	SNP	REM1	ENST00000201979	human	ensembl	69_37n	1	known	nonsense	c.446	p.S149*	0.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320	51	0	0	53	6	10.17	-	-	-	G	30070112	C	G	30070112	4	3	342	1	0	0	0	0	0	1	0	0	13305	838	29	2	456	2	REM1	20	30070112	Nonsense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09		30070112	32955408	76	37555										
RBPJL	0	genome.wustl.edu	37	chr20	43936867	43936867	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	gcagagcgaagccgacaggcGgagcctcccgggcacttgga	16	13	0	1			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	20	43936867	43936867	G	T	SNP	RBPJL	ENST00000343694	human	ensembl	69_37n	1	known	missense	c.107	p.R36L	0.882	NULL	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232	65	0	0	41	13	24.07	-	-	-	T	43936867	G	T	43936867	3	4	342	1	0	0	0	0	1	0	0	0	13245	1116	39	3	113	3	RBPJL	20	43936867	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	13866755	43936867	19088653	77	37556										
SLC12A5	0	genome.wustl.edu	37	chr20	44676722	44676722	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	cccccacacaccaagaactgGaggttagtggtgagggcacg	13	12	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	20	44676722	44676722	G	C	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2079	p.W693C	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	93	0	0	104	17	14.05	-	-	-	C	44676722	G	C	44676722	3	2	342	1	0	0	0	0	1	0	0	0	14475	1183	41	2	2197	2	SLC12A5	20	44676722	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09	739855	44676722	18348798	78	37557										
RSPH1	0	genome.wustl.edu	37	chr21	43906485	43906485	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	aagatagaaaccgaacctttGatgagcaaaccactctccag	7	11	1	4			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	21	43906485	43906485	G	C	SNP	RSPH1	ENST00000291536	human	ensembl	69_37n	-1	known	missense	c.361	p.Q121E	1.000	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188	159	0	0	138	19	12.1	-	-	-	C	43906485	G	C	43906485	3	2	342	1	0	0	0	0	1	0	0	0	13788	1299	45	2	592	2	RSPH1	21	43906485	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09		43906485	4223410	79	37558										
SH3BP1	0	genome.wustl.edu	37	chr22	38044419	38044419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	atagtcctgggacccaacttGctgtggccacctgagaaaga	11	11	0	2			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	22	38044419	38044419	G	T	SNP	SH3BP1	ENST00000357436	human	ensembl	69_37n	1	known	missense	c.1293	p.L431F	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	79	0	0	93	22	19.13	-	-	-	T	38044419	G	T	38044419	3	4	342	1	0	0	0	0	1	0	0	0	14332	1310	46	4	1347	4	SH3BP1	22	38044419	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09		38044419	13260147	80	37559										
MGAT3	0	genome.wustl.edu	37	chr22	39884853	39884853	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	tccactacctgctggacaacCcctaccaggagcccaggagc	9	17	0	0			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	22	39884853	39884853	C	G	SNP	MGAT3	ENST00000341184	human	ensembl	69_37n	1	known	missense	c.1501	p.P501A	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268	26	0	0	26	6	18.75	-	-	-	G	39884853	C	G	39884853	3	3	342	1	0	0	0	0	1	0	0	0	9615	623	22	4	1503	4	MGAT3	22	39884853	Missense_Mutation	SNP	C	TCGA-AO-A129-01A-21D-A10M-09	1840434	39884853	11419713	81	37560										
DDX3X	0	genome.wustl.edu	37	chrX	41204455	41204455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	acttggtgttagatgaagctGatcggatgttggatatgggg	16	3	0	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	X	41204455	41204455	G	A	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.1048	p.D350N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	243	0	0	182	33	15.35	-	-	-	A	41204455	G	A	41204455	3	1	342	1	0	0	0	0	1	0	0	0	4389	1290	45	2	1090	2	DDX3X	23	41204455	Missense_Mutation	SNP	G	TCGA-AO-A129-01A-21D-A10M-09		41204455	114066105	82	37561										
DGAT2L6	0	genome.wustl.edu	37	chrX	69424916	69424916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.180722891566265	15	0.00289031056861883	2.55764473033152	3.29936170212766	1.91267345050879	0.4794877603643	1	9	ctttgaccaacacaaagttgAatatggcctccctgagaccc	7	13	0	3			TCGA-AO-A129-01A-21D-A10M-09	TCGA-AO-A129-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cdf43c25-3ba7-4073-a92d-4a97f651f4a8	c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8	X	69424916	69424916	A	G	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	missense	c.974	p.E325G	0.810	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	106	0	0	62	8	11.43	-	-	-	G	69424916	A	G	69424916	3	3	342	1	0	0	0	0	1	0	0	0	4495	246	9	5	1000	5	DGAT2L6	23	69424916	Missense_Mutation	SNP	A	TCGA-AO-A129-01A-21D-A10M-09	28220461	69424916	85845644	83	37562										
OR2T2	0	genome.wustl.edu	37	chr1	248616883	248616883	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	agccttctacaccaacgtgcTgccccactcctaccacactc	4	20	1	0			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	1	248616883	248616883	T	A	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	missense	c.785	p.L262Q	0.339	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	34	0	0	122	18	12.86	-	-	-	A	248616883	T	A	248616883	3	1	343	1	0	0	0	0	1	0	0	0	11093	1580	55	5	787	5	OR2T2	1	248616883	Missense_Mutation	SNP	T	TCGA-AO-A12A-01A-21D-A10Y-09		248616883	633738	1	37563										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	162	0	0	69	41	36.94	-	-	-	A	178936082	G	A	178936082	3	1	343	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AO-A12A-01A-21D-A10Y-09		178936082	19086348	2	37564										
GRIA1	0	genome.wustl.edu	37	chr5	153056565	153056565	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	tcccactagtacacctctgcGctcacctacgatggggtgaa	9	14	2	1			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	5	153056565	153056565	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	silent	c.903	p.A301	0.889	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	55	0	0	56	9	13.85	-	-	-	A	153056565	G	A	153056565	2	1	343	1	0	0	0	0	0	0	0	1	6818	1074	38	1		1	GRIA1	5	153056565	Silent	SNP	G	TCGA-AO-A12A-01A-21D-A10Y-09		153056565	27858695	3	37565										
POLH	0	genome.wustl.edu	37	chr6	43571740	43571740	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ctccagagtcattttggggaGaagaatgggtaagtgattca	13	5	2	4			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	6	43571740	43571740	G	A	SNP	POLH	ENST00000372236	human	ensembl	69_37n	1	known	silent	c.876	p.E292	0.884	pfam_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734	209	0	0	144	18	11.11	-	-	-	A	43571740	G	A	43571740	2	1	343	1	0	0	0	0	0	0	0	1	12276	933	33	2		2	POLH	6	43571740	Silent	SNP	G	TCGA-AO-A12A-01A-21D-A10Y-09		43571740	127543327	4	37566										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	84	0	0	59	24	28.92	-	-	-	-	8111434	CA	-	8111433	8	5	343	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-AO-A12A-01A-21D-A10Y-09		8111433	127423314	5	37567										
CWF19L2	0	genome.wustl.edu	37	chr11	107300004	107300005	+	Frame_Shift_Ins	INS	-	-	T													0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ttgcagtatctgttgtagcaINStatctatcccttgaactgtt							TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	11	107300004	107300005	-	T	INS	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	frame_shift_ins	c.954_953	p.Y318fs	0.000:0.057	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	350	0	0	268	47	14.92	-	-	-	T	107300005	-	T	107300004	7	5	343	1	0	1	1	0	0	0	0	0	4103	224	8	0	1774	0	CWF19L2	11	107300004	Frame_Shift_Ins	INS	-	TCGA-AO-A12A-01A-21D-A10Y-09		107300004	27706512	6	37568										
ERBB3	0	genome.wustl.edu	37	chr12	56479001	56479001	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ttccttctggcctcacccctCagccagcccaagactggtac	7	18	3	1			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	12	56479001	56479001	C	T	SNP	ERBB3	ENST00000411731	human	ensembl	69_37n	1	known	nonsense	c.457	p.Q153*	0.299	NULL	pfam_EGF_rcpt_L	-	no_errors	ERBB3	HGNC	ENSG00000065361	51	0	0	48	6	11.11	-	-	-	T	56479001	C	T	56479001	4	4	343	1	0	0	0	0	0	1	0	0	5245	827	29	2	467	2	ERBB3	12	56479001	Nonsense_Mutation	SNP	C	TCGA-AO-A12A-01A-21D-A10Y-09		56479001	77372894	7	37569										
FLRT2	0	genome.wustl.edu	37	chr14	86089046	86089046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	aaccctagcagaagctacacGcctccaactcctaccacatc	4	18	0	1			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	14	86089046	86089046	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	silent	c.1188	p.T396	0.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	89	0	0	92	11	10.68	-	-	-	A	86089046	G	A	86089046	2	1	343	1	0	0	0	0	0	0	0	1	5985	1074	38	1		1	FLRT2	14	86089046	Silent	SNP	G	TCGA-AO-A12A-01A-21D-A10Y-09		86089046	21260494	8	37570										
ALPK2	0	genome.wustl.edu	37	chr18	56203486	56203486	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	tcttcgcctttatggctttcTctgctatcagcaagggctga	9	11	3	1			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	18	56203486	56203486	T	A	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.3933	p.R1311S	0.002	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	75	0	0	75	15	16.67	-	-	-	A	56203486	T	A	56203486	3	1	343	1	0	0	0	0	1	0	0	0	545	1548	54	5	2615	5	ALPK2	18	56203486	Missense_Mutation	SNP	T	TCGA-AO-A12A-01A-21D-A10Y-09		56203486	21873762	9	37571										
ZNF93	0	genome.wustl.edu	37	chr19	20026206	20026206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	tagagaactacagtaacctgGtcttccttggtgaggataac	10	8	1	2			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	19	20026206	20026206	G	A	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	missense	c.121	p.V41I	0.898	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	403	0	0	211	27	11.34	-	-	-	A	20026206	G	A	20026206	3	1	343	1	0	0	0	0	1	0	0	0	18295	1261	44	4	127	4	ZNF93	19	20026206	Missense_Mutation	SNP	G	TCGA-AO-A12A-01A-21D-A10Y-09		20026206	39102777	10	37572										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	21	45993851	45993851	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	silent	c.216	p.C72	0.141	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	14	0	0	31	10	24.39	-	-	-	T	45993851	C	T	45993851	2	4	343	1	0	0	0	0	0	0	0	1	8564	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-AO-A12A-01A-21D-A10Y-09		45993851	2136044	11	37573										
KDM6A	0	genome.wustl.edu	37	chrX	44942776	44942776	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	3	0.276216382619661	2.72268907563025	NA	2.72268907563025	0.1	0.5224358974359	0	cgtatcagcaggaaatcttcTaagccatgttggtcatacca	8	10	4	0			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	X	44942776	44942776	T	C	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.3377	p.L1126P	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	192	0	0	134	50	27.17	-	-	-	C	44942776	T	C	44942776	3	2	343	1	0	0	0	0	1	0	0	0	8190	1522	53	5	3446	5	KDM6A	23	44942776	Missense_Mutation	SNP	T	TCGA-AO-A12A-01A-21D-A10Y-09		44942776	110327784	12	37574										
AMY2A	0	genome.wustl.edu	37	chr1	104162362	104162362	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	acaaactgcataatctaaacAgtaactggttccctgcagga	7	10	1	0			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	104162362	104162362	A	T	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	1	known	missense	c.700	p.S234C	0.994	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	91	0	0	22	10	31.25	-	-	-	T	104162362	A	T	104162362	3	4	344	1	0	0	0	0	1	0	0	0	594	188	7	5	714	5	AMY2A	1	104162362	Missense_Mutation	SNP	A	TCGA-AO-A12B-01A-11D-A10M-09		104162362	145088259	1	37575										
DNM3	0	genome.wustl.edu	37	chr1	171958092	171958092	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	cctttccacacagtgttaaaTctaacccttattgatctacc	3	13	2	1			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	171958092	171958092	T	A	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.393	p.N131K	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	75	0	0	60	17	22.08	-	-	-	A	171958092	T	A	171958092	3	1	344	1	0	0	0	0	1	0	0	0	4708	1432	50	5	407	5	DNM3	1	171958092	Missense_Mutation	SNP	T	TCGA-AO-A12B-01A-11D-A10M-09	67795730	171958092	77292529	2	37576										
PTPN14	0	genome.wustl.edu	37	chr1	214543010	214543010	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	acctagtttgggccagtatcGgtggcttttggttcgtccac	12	10	0	0			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	214543010	214543010	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	nonsense	c.3061	p.R1021*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	87	0	0	200	45	18.37	-	-	-	A	214543010	G	A	214543010	4	1	344	1	0	0	0	0	0	1	0	0	12864	1124	39	1	514	1	PTPN14	1	214543010	Nonsense_Mutation	SNP	G	TCGA-AO-A12B-01A-11D-A10M-09	42584918	214543010	34707611	3	37577										
NNT	0	genome.wustl.edu	37	chr5	43616033	43616033	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	ggaacgctgattagttttatTtacccagcccaaaatccaga	7	10	0	2			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	5	43616033	43616033	T	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	missense	c.465	p.I155M	1.000	pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	158	0	0	126	120	48.39	-	-	-	G	43616033	T	G	43616033	3	3	344	1	0	0	0	0	1	0	0	0	10582	1829	64	5	475	5	NNT	5	43616033	Missense_Mutation	SNP	T	TCGA-AO-A12B-01A-11D-A10M-09		43616033	137299227	4	37578										
ADAMTS6	0	genome.wustl.edu	37	chr5	64748575	64748575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	gtaatgttcaatgtctttgcGgccatggtagcccaccatca	9	11	3	0			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	5	64748575	64748575	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.802	p.R268C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	119	1	0.83	134	108	44.44	-	-	-	A	64748575	G	A	64748575	3	1	344	1	0	0	0	0	1	0	0	0	270	1116	39	1	2635	1	ADAMTS6	5	64748575	Missense_Mutation	SNP	G	TCGA-AO-A12B-01A-11D-A10M-09	21132542	64748575	116166685	5	37579										
ANGPT2	0	genome.wustl.edu	37	chr8	6420368	6420368	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	gacctgatattgcttctttcCtatgctgtccatgctcttcc	6	13	2	1			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	8	6420368	6420368	C	G	SNP	ANGPT2	ENST00000325203	human	ensembl	69_37n	-1	known	missense	c.88	p.G30R	0.980	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT2	HGNC	ENSG00000091879	49	0	0	95	18	15.93	-	-	-	G	6420368	C	G	6420368	3	3	344	1	0	0	0	0	1	0	0	0	611	690	24	4	1438	4	ANGPT2	8	6420368	Missense_Mutation	SNP	C	TCGA-AO-A12B-01A-11D-A10M-09		6420368	139943654	6	37580										
PRKCQ	0	genome.wustl.edu	37	chr10	6470185	6470185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	agattcaggatatcagccgcTccatcccggggttcatgaag	11	11	3	2			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	10	6470185	6470185	T	C	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.2105	p.E702G	0.980	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	89	0	0	109	20	15.38	-	-	-	C	6470185	T	C	6470185	3	2	344	1	0	0	0	0	1	0	0	0	12596	1551	54	5	19	5	PRKCQ	10	6470185	Missense_Mutation	SNP	T	TCGA-AO-A12B-01A-11D-A10M-09		6470185	129064562	7	37581										
OR8D1	0	genome.wustl.edu	37	chr11	124179975	124179976	+	Frame_Shift_Ins	INS	-	-	AT													0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	ttggaccggccctctgaggaINSgcggatgtgaaggatgctgt							TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	11	124179975	124179976	-	AT	INS	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.688_687	p.S229fs	0.020:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	47	0	0	25	5	16.67	-	-	-	AT	124179976	-	AT	124179975	7	5	344	1	0	1	1	0	0	0	0	0	11304	304	11	0	241	0	OR8D1	11	124179975	Frame_Shift_Ins	INS	-	TCGA-AO-A12B-01A-11D-A10M-09		124179975	10826541	8	37582										
LIMA1	0	genome.wustl.edu	37	chr12	50616076	50616076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	ggggtggatttgttcttcttGgtcagctttggctccagaag	14	7	3	1			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	50616076	50616076	G	T	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.358	p.Q120K	0.006	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	127	0	0	80	103	56.28	-	-	-	T	50616076	G	T	50616076	3	4	344	1	0	0	0	0	1	0	0	0	8851	1357	47	4	1956	4	LIMA1	12	50616076	Missense_Mutation	SNP	G	TCGA-AO-A12B-01A-11D-A10M-09		50616076	83235819	9	37583										
TRHDE	0	genome.wustl.edu	37	chr12	72956810	72956810	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	aaactaaagcacttaaacttCagaataacaggtatgacatt	5	7	1	2			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	72956810	72956810	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	nonsense	c.1897	p.Q633*	0.925	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	105	0	0	25	30	54.55	-	-	-	T	72956810	C	T	72956810	4	4	344	1	0	0	0	0	0	1	0	0	16575	827	29	2	1931	2	TRHDE	12	72956810	Nonsense_Mutation	SNP	C	TCGA-AO-A12B-01A-11D-A10M-09	22340734	72956810	60895085	10	37584										
OSBPL8	0	genome.wustl.edu	37	chr12	76786476	76786476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	tccttctctgatcattgtacGtttaagaagactagaacatt	6	8	2	4			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	76786476	76786476	G	A	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.814	p.R272C	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	160	1	0.62	203	78	27.76	-	-	-	A	76786476	G	A	76786476	3	1	344	1	0	0	0	0	1	0	0	0	11356	1145	40	1	1915	1	OSBPL8	12	76786476	Missense_Mutation	SNP	G	TCGA-AO-A12B-01A-11D-A10M-09	3829666	76786476	57065419	11	37585										
TRPC4	0	genome.wustl.edu	37	chr13	38357162	38357162	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	ccgacgacttcttttctgatAgcatgtaatagagcatctcc	7	11	3	2			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	13	38357162	38357162	A	G	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	silent	c.309	p.A103	0.418	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	68	0	0	20	13	39.39	-	-	-	G	38357162	A	G	38357162	2	3	344	1	0	0	0	0	0	0	0	1	16676	407	15	5		5	TRPC4	13	38357162	Silent	SNP	A	TCGA-AO-A12B-01A-11D-A10M-09		38357162	76812716	12	37586										
CTCF	0	genome.wustl.edu	37	chr16	67644796	67644799	+	Frame_Shift_Del	DEL	GAGA	GAGA	-													0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	aaacttttattaaaggaaagGagagaaagacttaccagaga							TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	GAGA	GAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	16	67644796	67644799	GAGA	-	DEL	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	frame_shift_del	c.61_64	p.K23fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	34	0	0	10	17	62.96	-	-	-	-	67644799	GAGA	-	67644796	7	5	344	1	0	1	0	1	0	0	0	0	4032	1175	41	0	63	0	CTCF	16	67644796	Frame_Shift_Del	DEL	GAGA	TCGA-AO-A12B-01A-11D-A10M-09		67644796	22709957	13	37587										
USP32	0	genome.wustl.edu	37	chr17	58260550	58260550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.939876881807401	0.944444444444444	0	1.13333333333333	1	1	0	cgggctgctgatgatgttagCgctgagtgaggatgggcttt	17	6	0	4			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	17	58260550	58260550	C	T	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4099	p.A1367T	0.787	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	51	0	0	38	27	41.54	-	-	-	T	58260550	C	T	58260550	3	4	344	1	0	0	0	0	1	0	0	0	17160	768	27	1	731	1	USP32	17	58260550	Missense_Mutation	SNP	C	TCGA-AO-A12B-01A-11D-A10M-09		58260550	22934660	14	37588										
GBP5	0	genome.wustl.edu	37	chr1	89732775	89732775	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	cgcagagtcagcaggatcttCaaccctgtcaaggtcgggtg	13	11	4	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	89732775	89732775	C	G	SNP	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	missense	c.490	p.E164Q	0.156	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	139	0	0	77	14	15.38	-	-	-	G	89732775	C	G	89732775	3	3	345	1	0	0	0	0	1	0	0	0	6327	835	29	2	1298	2	GBP5	1	89732775	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		89732775	159517846	1	37589										
TPO	0	genome.wustl.edu	37	chr2	1500429	1500429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	ttgtgcactgtgaggagtctGggaggcgcgtgctggtgtat	18	6	1	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	2	1500429	1500429	G	A	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	missense	c.2278	p.G760R	0.793	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	211	0	0	147	23	13.53	-	-	-	A	1500429	G	A	1500429	3	1	345	1	0	0	0	0	1	0	0	0	16506	1348	47	4	2324	4	TPO	2	1500429	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		1500429	241698944	2	37590										
EPHA6	0	genome.wustl.edu	37	chr3	97185269	97185269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	attatattccataggactctCcatttcaagtgacaaaactg	5	9	2	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	97185269	97185269	C	G	SNP	EPHA6	ENST00000502694	human	ensembl	69_37n	1	known	missense	c.13	p.P5A	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	297	0	0	169	20	10.58	-	-	-	G	97185269	C	G	97185269	3	3	345	1	0	0	0	0	1	0	0	0	5208	855	30	2	1931	2	EPHA6	3	97185269	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		97185269	100837161	3	37591										
GFM1	0	genome.wustl.edu	37	chr3	158376754	158376754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	ttatgttcgcagttatcaggGagagctaaagaagggtgaca	13	5	1	3			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	158376754	158376754	G	A	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	1	known	missense	c.1127	p.G376E	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	199	0	0	138	21	13.21	-	-	-	A	158376754	G	A	158376754	3	1	345	1	0	0	0	0	1	0	0	0	6393	1174	41	2	1161	2	GFM1	3	158376754	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09	61191485	158376754	39645676	4	37592										
FXR1	0	genome.wustl.edu	37	chr3	180687950	180687950	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	tctgacatgaatatagtgctCaaagatccagacagcaatcc	7	10	2	4			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	180687950	180687950	C	G	SNP	FXR1	ENST00000482125	human	ensembl	69_37n	1	novel	nonsense	c.209	p.S70*	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FXR1	HGNC	ENSG00000114416	117	0	0	57	25	30.49	-	-	-	G	180687950	C	G	180687950	4	3	345	1	0	0	0	0	0	1	0	0	6164	813	29	2	1465	2	FXR1	3	180687950	Nonsense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	22311196	180687950	17334480	5	37593										
PDGFRA	0	genome.wustl.edu	37	chr4	55141065	55141065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	caatcagcccagatggacatGaatatatttatgtggacccg	9	9	1	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	55141065	55141065	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.1711	p.E571K	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	123	0	0	78	25	24.27	-	-	-	A	55141065	G	A	55141065	3	1	345	1	0	0	0	0	1	0	0	0	11734	1291	45	2	1753	2	PDGFRA	4	55141065	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		55141065	136013211	6	37594										
GLRB	0	genome.wustl.edu	37	chr4	158065056	158065056	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	actctgctcattgttgttctCtcctggctttccttctggat	7	12	4	0			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	158065056	158065056	C	T	SNP	GLRB	ENST00000264428	human	ensembl	69_37n	1	known	silent	c.849	p.L283	0.751	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738	302	0	0	147	24	14.04	-	-	-	T	158065056	C	T	158065056	2	4	345	1	0	0	0	0	0	0	0	1	6510	900	32	2		2	GLRB	4	158065056	Silent	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	102923991	158065056	33089220	7	37595										
AGXT2	0	genome.wustl.edu	37	chr5	35039475	35039475	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aacaatcccggaaaagaaatCcaggtatctgcttccttcag	7	11	2	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	35039475	35039475	C	A	SNP	AGXT2	ENST00000231420	human	ensembl	69_37n	-1	known	missense	c.316	p.D106Y	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2	HGNC	ENSG00000113492	96	0	0	80	13	13.98	-	-	-	A	35039475	C	A	35039475	3	1	345	1	0	0	0	0	1	0	0	0	405	855	30	2	1276	2	AGXT2	5	35039475	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		35039475	145875785	8	37596										
PCDHA5	0	genome.wustl.edu	37	chr5	140203377	140203377	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	tgtcgctggtggaaagtggcCaggcgccgaaggcctcatcg	16	11	1	0			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	140203377	140203377	C	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.2017	p.Q673K	0.073	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	26	0	0	30	8	21.05	-	-	-	A	140203377	C	A	140203377	3	1	345	1	0	0	0	0	1	0	0	0	11600	595	21	4	2019	4	PCDHA5	5	140203377	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	105163902	140203377	40711883	9	37597										
BEND3	0	genome.wustl.edu	37	chr6	107390228	107390228	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	gatctcacgcacctccttgtCagacagcaggtagggagaag	12	11	2	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	107390228	107390228	C	T	SNP	BEND3	ENST00000369042	human	ensembl	69_37n	-1	known	missense	c.2167	p.D723N	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409	42	0	0	28	5	15.15	-	-	-	T	107390228	C	T	107390228	3	4	345	1	0	0	0	0	1	0	0	0	1403	826	29	2	323	2	BEND3	6	107390228	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		107390228	63724839	10	37598										
HIVEP2	0	genome.wustl.edu	37	chr6	143091478	143091478	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	agctcctccacaatctgtccGtacatcttttcttctttgac	4	14	4	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	143091478	143091478	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	silent	c.4398	p.Y1466	0.147	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	442	0	0	197	43	17.92	-	-	-	A	143091478	G	A	143091478	2	1	345	1	0	0	0	0	0	0	0	1	7238	1140	40	1		1	HIVEP2	6	143091478	Silent	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09	35701250	143091478	28023589	11	37599										
CYTH3	0	genome.wustl.edu	37	chr7	6210581	6210581	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aggctggtgttgagcatgatGatggcgaatgacagcacgta	15	6	0	4			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	6210581	6210581	G	A	SNP	CYTH3	ENST00000350796	human	ensembl	69_37n	-1	known	silent	c.591	p.I197	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH3	HGNC	ENSG00000008256	123	0	0	154	18	10.47	-	-	-	A	6210581	G	A	6210581	2	1	345	1	0	0	0	0	0	0	0	1	4236	1280	45	2		2	CYTH3	7	6210581	Silent	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		6210581	152928082	12	37600										
EPDR1	0	genome.wustl.edu	37	chr7	37960275	37960275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	gcggcagaaggcagtggcagCaggcagtggcagcaggcagt	19	9	0	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	37960275	37960275	C	A	SNP	EPDR1	ENST00000559325	human	ensembl	69_37n	1	known	missense	c.94	p.Q32K	0.095	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	28	0	0	25	4	13.79	-	-	-	A	37960275	C	A	37960275	3	1	345	1	0	0	0	0	1	0	0	0	5200	711	25	4	96	4	EPDR1	7	37960275	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	31749694	37960275	121178388	13	37601										
EXOC4	0	genome.wustl.edu	37	chr7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	cagcaaaagcaaagacccctCggggctgctcatctctgtga	10	13	2	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	132937919	132937919	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.62	p.S21L	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	86	0	0	59	8	11.76	-	-	-	T	132937919	C	T	132937919	3	4	345	1	0	0	0	0	1	0	0	0	5342	893	31	1	64	1	EXOC4	7	132937919	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	94977644	132937919	26200744	14	37602										
TRIM55	0	genome.wustl.edu	37	chr8	67040682	67040682	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aacctgctggtggaaaatatCattgacatctacaagcagga	9	8	2	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	67040682	67040682	C	A	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	silent	c.312	p.I104	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	181	0	0	145	17	10.49	-	-	-	A	67040682	C	A	67040682	2	1	345	1	0	0	0	0	0	0	0	1	16625	816	29	2		2	TRIM55	8	67040682	Silent	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		67040682	79323340	15	37603										
SLCO5A1	0	genome.wustl.edu	37	chr8	70591657	70591657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	ggttgggcacatgctgtgatGaaggtgactatgaaaagaaa	14	4	0	5			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	70591657	70591657	G	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.1980	p.F660L	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	307	0	0	322	38	10.53	-	-	-	T	70591657	G	T	70591657	3	4	345	1	0	0	0	0	1	0	0	0	14820	1281	45	2	578	2	SLCO5A1	8	70591657	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09	3550975	70591657	75772365	16	37604										
DCAF12	0	genome.wustl.edu	37	chr9	34125232	34125232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	atactaaggatctcttcacaGgaggaagtcttttccttttg	8	8	3	0			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	34125232	34125232	G	A	SNP	DCAF12	ENST00000361264	human	ensembl	69_37n	-1	known	missense	c.122	p.P41L	0.974	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	95	0	0	82	33	28.7	-	-	-	A	34125232	G	A	34125232	3	1	345	1	0	0	0	0	1	0	0	0	4295	1000	35	4	1271	4	DCAF12	9	34125232	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		34125232	107088199	17	37605										
TGFBR1	0	genome.wustl.edu	37	chr9	101900249	101900249	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aggaaagtggcggggagaagAagttgctgttaagatattct	15	3	1	3			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	101900249	101900249	A	T	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	1	known	missense	c.683	p.E228V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	267	0	0	243	53	17.85	-	-	-	T	101900249	A	T	101900249	3	4	345	1	0	0	0	0	1	0	0	0	15916	246	9	5	697	5	TGFBR1	9	101900249	Missense_Mutation	SNP	A	TCGA-AO-A12D-01A-11D-A10Y-09	67775017	101900249	39313182	18	37606										
SEC31B	0	genome.wustl.edu	37	chr10	102255183	102255183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	caatctgtaagatgatgtctCtttagagtggagggtagctc	12	6	2	3			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	102255183	102255183	C	G	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.2431	p.E811Q	0.283	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	121	0	0	98	15	13.27	-	-	-	G	102255183	C	G	102255183	3	3	345	1	0	0	0	0	1	0	0	0	14087	922	32	2	1140	2	SEC31B	10	102255183	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		102255183	33279564	19	37607										
PRKRIR	0	genome.wustl.edu	37	chr11	76062204	76062204	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	gtcaggcaggtggagggcttCatagatggtggacggaagct	18	6	2	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	76062204	76062204	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1990	p.E664K	1.000	pfam_HATC,superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	231	0	0	152	25	14.12	-	-	-	T	76062204	C	T	76062204	3	4	345	1	0	0	0	0	1	0	0	0	12607	835	29	2	299	2	PRKRIR	11	76062204	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		76062204	58944312	20	37608										
UPK2	0	genome.wustl.edu	37	chr11	118828354	118828354	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	cagccactgagtccagcagaGagatcccaatgtccacactc	8	15	0	3			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	118828354	118828354	G	C	SNP	UPK2	ENST00000264031	human	ensembl	69_37n	1	known	missense	c.394	p.E132Q	0.316	pfam_Uroplakin_II,pirsf_Uroplakin_II	pfam_Uroplakin_II,pirsf_Uroplakin_II	-	no_errors	UPK2	HGNC	ENSG00000110375	201	0	0	170	23	11.92	-	-	-	C	118828354	G	C	118828354	3	2	345	1	0	0	0	0	1	0	0	0	17106	943	33	2	408	2	UPK2	11	118828354	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09	42766150	118828354	16178162	21	37609										
CUX2	0	genome.wustl.edu	37	chr12	111785675	111785675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	agaggagcatcccgaccctcCgggtaatgatggactcccaa	11	13	0	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	111785675	111785675	C	T	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	1	known	missense	c.4007	p.P1336L	0.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	55	0	0	48	10	17.24	-	-	-	T	111785675	C	T	111785675	3	4	345	1	0	0	0	0	1	0	0	0	4096	652	23	1	4093	1	CUX2	12	111785675	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09		111785675	22066220	22	37610										
VPS33A	0	genome.wustl.edu	37	chr12	122716807	122716807	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aacatcctagaaaggtttttCcatcagagcctctatccaac	5	12	2	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	122716807	122716807	C	G	SNP	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	missense	c.1777	p.E593Q	1.000	superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	250	1	0.4	219	29	11.69	-	-	-	G	122716807	C	G	122716807	3	3	345	1	0	0	0	0	1	0	0	0	17298	864	30	2	17	2	VPS33A	12	122716807	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	10931132	122716807	11135088	23	37611										
FAM192A	0	genome.wustl.edu	37	chr16	57188235	57188235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	aggaaggtgttggttcggaaGatggaggagacaatctttcc	15	5	1	2			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	16	57188235	57188235	G	A	SNP	FAM192A	ENST00000565956	human	ensembl	69_37n	-1	novel	missense	c.430	p.L144F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM192A	HGNC	ENSG00000172775	116	0	0	59	10	14.49	-	-	-	A	57188235	G	A	57188235	3	1	345	1	0	0	0	0	1	0	0	0	5565	932	33	2	36	2	FAM192A	16	57188235	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		57188235	33166518	24	37612										
TP53	0	genome.wustl.edu	37	chr17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-													0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	cggttcatgccgcccatgcaGgaactgttacacatgtagtt							TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	138	0	0	53	23	30.26	-	-	-	-	7577558	G	-	7577558	7	5	345	1	0	1	0	1	0	0	0	0	16477	987	35	0	567	0	TP53	17	7577558	Frame_Shift_Del	DEL	G	TCGA-AO-A12D-01A-11D-A10Y-09		7577558	73617652	25	37613										
PLCG1	0	genome.wustl.edu	37	chr20	39802138	39802138	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	agattgaggtggctggagctGagtatgacagcaccaagcag	15	7	0	4			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	20	39802138	39802138	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.3358	p.E1120K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	209	0	0	143	18	11.18	-	-	-	A	39802138	G	A	39802138	3	1	345	1	0	0	0	0	1	0	0	0	12109	1291	45	2	3468	2	PLCG1	20	39802138	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		39802138	23223382	26	37614										
ZNF157	0	genome.wustl.edu	37	chrX	47270116	47270116	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	ccagagatgatcttcaagttGgagcgaggagaagagctgtg	15	6	2	4			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47270116	47270116	G	C	SNP	ZNF157	ENST00000377073	human	ensembl	69_37n	1	known	missense	c.237	p.L79F	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117	167	0	0	134	22	14.1	-	-	-	C	47270116	G	C	47270116	3	2	345	1	0	0	0	0	1	0	0	0	17833	1339	47	4	247	4	ZNF157	23	47270116	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09		47270116	108000444	27	37615										
ZNF41	0	genome.wustl.edu	37	chrX	47307056	47307056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	cttctgatgtatattgaggcGtgacttccaggtgaaggttt	12	6	1	4			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47307056	47307056	G	A	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.2143	p.R715C	0.021	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	223	0	0	195	31	13.66	-	-	-	A	47307056	G	A	47307056	3	1	345	1	0	0	0	0	1	0	0	0	17985	1145	40	1	230	1	ZNF41	23	47307056	Missense_Mutation	SNP	G	TCGA-AO-A12D-01A-11D-A10Y-09	36940	47307056	107963504	28	37616										
ODZ1	0	genome.wustl.edu	37	chrX	123518516	123518516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.379310344827586	11	0.00521936907335126	2.79	3.18857142857143	2.604	0.428307982231794	1	7	atttaaatcgtaattaattaCactgaattttccaaactgct	3	7	0	1			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	123518516	123518516	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.6265	p.V2089I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	336	0	0	127	64	33.51	-	-	-	T	123518516	C	T	123518516	3	4	345	1	0	0	0	0	1	0	0	0	10907	478	17	4	1945	4	ODZ1	23	123518516	Missense_Mutation	SNP	C	TCGA-AO-A12D-01A-11D-A10Y-09	76211460	123518516	31752044	29	37617										
TAS1R3	0	genome.wustl.edu	37	chr1	1269622	1269622	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atcacctgggtctcctttgtGcccctcctggccaatgtgca	9	15	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	1269622	1269622	G	C	SNP	TAS1R3	ENST00000339381	human	ensembl	69_37n	1	known	silent	c.2337	p.V779	0.943	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	14	0	0	4	4	50	-	-	-	C	1269622	G	C	1269622	2	2	346	1	0	0	0	0	0	0	0	1	15656	1306	46	4		4	TAS1R3	1	1269622	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		1269622	247980999	1	37618										
CASZ1	0	genome.wustl.edu	37	chr1	10699922	10699922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcagtggtagtgggtgacctTgagcgagaactgacaagctg	16	7	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	10699922	10699922	T	G	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.4357	p.K1453Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	45	0	0	1	4	80	-	-	-	G	10699922	T	G	10699922	3	3	346	1	0	0	0	0	1	0	0	0	2710	1821	63	5	926	5	CASZ1	1	10699922	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	9430300	10699922	238550699	2	37619										
PRAMEF2	0	genome.wustl.edu	37	chr1	12921333	12921333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catcctgcctggcctgagctGctgctcccagctcaccacct	8	19	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	12921333	12921333	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	missense	c.1124	p.C375Y	0.676	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	98	0	0	102	60	37.04	-	-	-	A	12921333	G	A	12921333	3	1	346	1	0	0	0	0	1	0	0	0	12513	1319	46	4	1134	4	PRAMEF2	1	12921333	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2221411	12921333	236329288	3	37620										
PRAMEF4	0	genome.wustl.edu	37	chr1	12943038	12943038	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaggcggcggaagggccaggActgcaccatcagcttcaggg	17	11	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	12943038	12943038	A	C	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.178	p.S60A	0.726	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	57	0	0	28	27	49.09	-	-	-	C	12943038	A	C	12943038	3	2	346	1	0	0	0	0	1	0	0	0	12517	275	10	5	1270	5	PRAMEF4	1	12943038	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	21705	12943038	236307583	4	37621										
NBPF1	0	genome.wustl.edu	37	chr1	16912063	16912063	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttgaggtttctgaactgctgTttcttctctgccagctgggg	12	9	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	16912063	16912063	T	A	SNP	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	51	0	0	32	4	11.11	-	-	-	A	16912063	T	A	16912063	1	1	346	0	1	0	0	0	0	0	0	0	10264	1722	60	5		5	NBPF1	1	16912063	RNA	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3969025	16912063	232338558	5	37622										
TAS1R2	0	genome.wustl.edu	37	chr1	19166642	19166642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cggctggccatcttgaaggcGcagacgatctggaaagaacg	14	10	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	19166642	19166642	G	A	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	silent	c.1971	p.C657	0.260	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	105	0	0	24	27	51.92	-	-	-	A	19166642	G	A	19166642	2	1	346	1	0	0	0	0	0	0	0	1	15655	1079	38	1		1	TAS1R2	1	19166642	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2254579	19166642	230083979	6	37623										
UBR4	0	genome.wustl.edu	37	chr1	19408135	19408135	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cccggcagcaagagcaggaaGaatttgctcaatttgtcgtt	11	9	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	19408135	19408135	G	C	SNP	UBR4	ENST00000375225	human	ensembl	69_37n	-1	known	missense	c.166	p.L56V	0.000	NULL	NULL	-	no_errors	UBR4	HGNC	ENSG00000127481	27	0	0	29	25	46.3	-	-	-	C	19408135	G	C	19408135	3	2	346	1	0	0	0	0	1	0	0	0	17001	957	33	2		2	UBR4	1	19408135	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	241493	19408135	229842486	7	37624										
CELA3B	0	genome.wustl.edu	37	chr1	22307619	22307619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgatccccatcaactctgggGacctctttgtgcatccactc	7	15	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	22307619	22307619	G	T	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	missense	c.316	p.D106Y	0.866	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	18	0	0	24	31	56.36	-	-	-	T	22307619	G	T	22307619	3	4	346	1	0	0	0	0	1	0	0	0	3243	1174	41	2	330	2	CELA3B	1	22307619	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2899484	22307619	226943002	8	37625										
C1orf216	0	genome.wustl.edu	37	chr1	36181335	36181335	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcgaagctctcctgcagtcgGgcctgctggtcaatcaactg	11	13	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	36181335	36181335	G	T	SNP	C1orf216	ENST00000270815	human	ensembl	69_37n	-1	known	silent	c.588	p.A196	1.000	NULL	NULL	-	no_errors	C1orf216	HGNC	ENSG00000142686	61	0	0	21	35	62.5	-	-	-	T	36181335	G	T	36181335	2	4	346	1	0	0	0	0	0	0	0	1	2051	1219	43	4		4	C1orf216	1	36181335	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	13873716	36181335	213069286	9	37626										
MACF1	0	genome.wustl.edu	37	chr1	39796972	39796972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctccttgaccaagacacagGcctagtgcttctggaatctc	8	14	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	39796972	39796972	G	A	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.4823	p.G1608D	1.000	superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	31	0	0	24	20	45.45	-	-	-	A	39796972	G	A	39796972	3	1	346	1	0	0	0	0	1	0	0	0	9211	1203	42	4	4803	4	MACF1	1	39796972	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3615637	39796972	209453649	10	37627										
OXCT2	0	genome.wustl.edu	37	chr1	40235448	40235448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccccgtgctctttttgatgtCgtccaccgtcaggccctccc	8	18	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	40235448	40235448	C	T	SNP	OXCT2	ENST00000327582	human	ensembl	69_37n	-1	known	missense	c.1480	p.D494N	0.171	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754	24	0	0	12	9	42.86	-	-	-	T	40235448	C	T	40235448	3	4	346	1	0	0	0	0	1	0	0	0	11403	884	31	1	77	1	OXCT2	1	40235448	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	438476	40235448	209015173	11	37628										
OXCT2	0	genome.wustl.edu	37	chr1	40236074	40236074	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgtctccatcttcctctttcAggatcgttaagcgctcaatt	6	13	5	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	40236074	40236074	A	C	SNP	OXCT2	ENST00000327582	human	ensembl	69_37n	-1	known	missense	c.854	p.L285R	0.000	pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754	110	0	0	0	13	100	-	-	-	C	40236074	A	C	40236074	3	2	346	1	0	0	0	0	1	0	0	0	11403	188	7	5	703	5	OXCT2	1	40236074	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	626	40236074	209014547	12	37629										
SCMH1	0	genome.wustl.edu	37	chr1	41541040	41541040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctctgccctggttgatgttCcaagacagttttggtgctgc	11	11	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	41541040	41541040	C	T	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	missense	c.799	p.E267K	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	65	0	0	45	65	59.09	-	-	-	T	41541040	C	T	41541040	3	4	346	1	0	0	0	0	1	0	0	0	13996	864	30	2	1215	2	SCMH1	1	41541040	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1304966	41541040	207709581	13	37630										
WDR78	0	genome.wustl.edu	37	chr1	67306238	67306238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccaaagtcgttccaagttggCgggtattgttgattcttctg	11	8	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	67306238	67306238	C	T	SNP	WDR78	ENST00000371026	human	ensembl	69_37n	-1	known	missense	c.1408	p.A470T	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	168	0	0	257	100	28.01	-	-	-	T	67306238	C	T	67306238	3	4	346	1	0	0	0	0	1	0	0	0	17425	768	27	1	1231	1	WDR78	1	67306238	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	25765198	67306238	181944383	14	37631										
AKNAD1	0	genome.wustl.edu	37	chr1	109365781	109365781	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttcaaagtccttggtcactgCgatttcatattttccagccc	6	12	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	109365781	109365781	C	T	SNP	AKNAD1	ENST00000369995	human	ensembl	69_37n	-1	known	silent	c.2280	p.S760	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	29	0	0	10	14	58.33	-	-	-	T	109365781	C	T	109365781	2	4	346	1	0	0	0	0	0	0	0	1	464	783	27	1		1	AKNAD1	1	109365781	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	42059543	109365781	139884840	15	37632										
SYCP1	0	genome.wustl.edu	37	chr1	115398186	115398186	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctgggaggcgattccacttTcttcaaggtaaatttccatg	9	10	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	115398186	115398186	T	A	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.101	p.F34Y	0.998	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	11	0	0	21	22	51.16	-	-	-	A	115398186	T	A	115398186	3	1	346	1	0	0	0	0	1	0	0	0	15523	1783	62	5	103	5	SYCP1	1	115398186	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	6032405	115398186	133852435	16	37633										
HRNR	0	genome.wustl.edu	37	chr1	152191107	152191107	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agactggccagatccagaccCatgttggccgtggcccaaag	12	13	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	152191107	152191107	C	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.2998	p.G1000W	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	42	0	0	46	46	50	-	-	-	A	152191107	C	A	152191107	3	1	346	1	0	0	0	0	1	0	0	0	7410	594	21	4	5558	4	HRNR	1	152191107	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	36792921	152191107	97059514	17	37634										
ARHGEF2	0	genome.wustl.edu	37	chr1	155927620	155927620	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaaacatccctttctcctgGttggcaatgtctcgtacgat	8	11	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	155927620	155927620	G	A	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	silent	c.1602	p.N534	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	20	0	0	16	15	48.39	-	-	-	A	155927620	G	A	155927620	2	1	346	1	0	0	0	0	0	0	0	1	905	1252	44	4		4	ARHGEF2	1	155927620	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3736513	155927620	93323001	18	37635										
NES	0	genome.wustl.edu	37	chr1	156641321	156641321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctcaatgattcctgattctCctcttccaggagtctgaatg	7	11	4	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	156641321	156641321	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.2659	p.E887K	0.001	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	185	0	0	49	55	52.88	-	-	-	T	156641321	C	T	156641321	3	4	346	1	0	0	0	0	1	0	0	0	10409	864	30	2	2210	2	NES	1	156641321	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	713701	156641321	92609300	19	37636										
FCGR3A	0	genome.wustl.edu	37	chr1	161518214	161518214	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccccttcatcaactcaccgaTatggacttctagctgcaccg	6	16	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	161518214	161518214	T	C	SNP	FCGR3A	ENST00000367969	human	ensembl	69_37n	-1	known	missense	c.424	p.I142V	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCGR3A	HGNC	ENSG00000203747	54	0	0	164	38	18.72	-	-	-	C	161518214	T	C	161518214	3	2	346	1	0	0	0	0	1	0	0	0	5830	1406	49	5	460	5	FCGR3A	1	161518214	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	4876893	161518214	87732407	20	37637										
LAMC1	0	genome.wustl.edu	37	chr1	183091057	183091057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgcgcctgcaatggacacagCgagacctgtgatcctgagac	12	12	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	183091057	183091057	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	silent	c.2190	p.S730	0.991	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	84	0	0	76	77	50.33	-	-	-	T	183091057	C	T	183091057	2	4	346	1	0	0	0	0	0	0	0	1	8668	767	27	1		1	LAMC1	1	183091057	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	21572843	183091057	66159564	21	37638										
F13B	0	genome.wustl.edu	37	chr1	197024939	197024939	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcattgcatctatattccacTgaggatcctgttgcatagct	7	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	197024939	197024939	T	A	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	silent	c.1260	p.S420	0.188	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	34	0	0	67	83	54.97	-	-	-	A	197024939	T	A	197024939	2	1	346	1	0	0	0	0	0	0	0	1	5378	1567	55	5		5	F13B	1	197024939	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	13933882	197024939	52225682	22	37639										
SLC26A9	0	genome.wustl.edu	37	chr1	205896725	205896725	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagttgctgcagccgagagcGatcatctcctgcagggaggg	15	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	205896725	205896725	G	A	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	silent	c.1110	p.I370	0.466	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	57	0	0	51	30	37.04	-	-	-	A	205896725	G	A	205896725	2	1	346	1	0	0	0	0	0	0	0	1	14613	1048	37	1		1	SLC26A9	1	205896725	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8871786	205896725	43353896	23	37640										
FCAMR	0	genome.wustl.edu	37	chr1	207133065	207133065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcctttgcaatagaaccagaGccataagcataaacagggcc	8	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	207133065	207133065	G	A	SNP	FCAMR	ENST00000400962	human	ensembl	69_37n	-1	known	missense	c.730	p.L244F	0.393	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCAMR	HGNC	ENSG00000162897	83	0	0	88	53	37.59	-	-	-	A	207133065	G	A	207133065	3	1	346	1	0	0	0	0	1	0	0	0	5818	971	34	4	209	4	FCAMR	1	207133065	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1236340	207133065	42117556	24	37641										
CR1	0	genome.wustl.edu	37	chr1	207737244	207737244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagatgtcctgcatgctgagCgtacccaaagggacaaggac	12	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	207737244	207737244	C	T	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.3622	p.R1208C	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	28	0	0	77	59	43.38	-	-	-	T	207737244	C	T	207737244	3	4	346	1	0	0	0	0	1	0	0	0	3870	768	27	1	3708	1	CR1	1	207737244	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	604179	207737244	41513377	25	37642										
CD34	0	genome.wustl.edu	37	chr1	208061172	208061172	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cccgttttcctgagcccctcGgttcacactggcctttccct	7	18	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	208061172	208061172	G	A	SNP	CD34	ENST00000310833	human	ensembl	69_37n	-1	known	nonsense	c.1069	p.R357*	1.000	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	49	0	0	33	49	59.76	-	-	-	A	208061172	G	A	208061172	4	1	346	1	0	0	0	0	0	1	0	0	3035	1124	39	1	92	1	CD34	1	208061172	Nonsense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	323928	208061172	41189449	26	37643										
RRP15	0	genome.wustl.edu	37	chr1	218504400	218504400	+	Frame_Shift_Del	DEL	C	C	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agtgatgggccagatgacagCagaccagaatctgcaagtga							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	218504400	218504400	C	-	DEL	RRP15	ENST00000366932	human	ensembl	69_37n	1	known	frame_shift_del	c.816	p.S272fs	0.000	NULL	pfam_DUF1665	-	no_errors	RRP15	HGNC	ENSG00000067533	24	0	0	34	55	58.51	-	-	-	-	218504400	C	-	218504400	7	5	346	1	0	1	0	1	0	0	0	0	13773	709	25	0	834	0	RRP15	1	218504400	Frame_Shift_Del	DEL	C	TCGA-AO-A12E-01A-11D-A10M-09	10443228	218504400	30746221	27	37644										
URB2	0	genome.wustl.edu	37	chr1	229772434	229772434	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctttaatgcaaactagtttcCggtctgaaggagccatccaa	8	10	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	229772434	229772434	C	T	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.2074	p.R692W	0.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	58	0	0	27	22	44.9	-	-	-	T	229772434	C	T	229772434	3	4	346	1	0	0	0	0	1	0	0	0	17122	643	23	1	2084	1	URB2	1	229772434	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	11268034	229772434	19478187	28	37645										
RYR2	0	genome.wustl.edu	37	chr1	237604721	237604721	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tacaacatgtagacacaggcCtatggcttacttaccagtct	7	11	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	237604721	237604721	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.1102	p.L368	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	74	0	0	113	133	54.07	-	-	-	T	237604721	C	T	237604721	2	4	346	1	0	0	0	0	0	0	0	1	13855	680	24	4		4	RYR2	1	237604721	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7832287	237604721	11645900	29	37646										
AHCTF1	0	genome.wustl.edu	37	chr1	247059157	247059157	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cttctgttatccatcttcggAtataaccagtcaaaagtccc	5	12	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	247059157	247059157	A	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.1721	p.I574S	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	80	0	0	105	193	64.77	-	-	-	C	247059157	A	C	247059157	3	2	346	1	0	0	0	0	1	0	0	0	408	333	12	5	5202	5	AHCTF1	1	247059157	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	9454436	247059157	2191464	30	37647										
OR2T8	0	genome.wustl.edu	37	chr1	248085011	248085011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcacatgcgctctacagaagCccgcaagaaggcctttgcca	10	14	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	248085011	248085011	C	G	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.692	p.A231G	0.131	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	23	0	0	30	43	58.9	-	-	-	G	248085011	C	G	248085011	3	3	346	1	0	0	0	0	1	0	0	0	11103	739	26	4	694	4	OR2T8	1	248085011	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1025854	248085011	1165610	31	37648										
OR2L8	0	genome.wustl.edu	37	chr1	248112738	248112738	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcctgcatggacacctgggtCtatgagggcacagtgttttt	13	9	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	248112738	248112738	C	A	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	silent	c.579	p.V193	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	57	0	0	142	134	48.55	-	-	-	A	248112738	C	A	248112738	2	1	346	1	0	0	0	0	0	0	0	1	11082	900	32	2		2	OR2L8	1	248112738	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	27727	248112738	1137883	32	37649										
OR2T3	0	genome.wustl.edu	37	chr1	248637115	248637115	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctggtgtcagcctgctgggTtttgggaatggttgatggtt	16	6	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	248637115	248637115	T	C	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	missense	c.464	p.V155A	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	48	0	0	58	41	41.41	-	-	-	C	248637115	T	C	248637115	3	2	346	1	0	0	0	0	1	0	0	0	11096	1725	60	5	466	5	OR2T3	1	248637115	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	524377	248637115	613506	33	37650										
OR2T3	0	genome.wustl.edu	37	chr1	248637362	248637362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacaggatgaattctgccgcCggccacaggaaggccttggc	13	13	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	248637362	248637362	C	T	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	silent	c.711	p.A237	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	134	0	0	88	40	31.25	-	-	-	T	248637362	C	T	248637362	2	4	346	1	0	0	0	0	0	0	0	1	11096	639	23	1		1	OR2T3	1	248637362	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	247	248637362	613259	34	37651										
OR2T27	0	genome.wustl.edu	37	chr1	248813723	248813723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gggggtgagcaagaaaccatCgatagaccctcccagccagg	13	12	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	1	248813723	248813723	C	T	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.463	p.D155N	0.078	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	23	0	0	0	17	100	-	-	-	T	248813723	C	T	248813723	3	4	346	1	0	0	0	0	1	0	0	0	11094	884	31	1	493	1	OR2T27	1	248813723	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	176361	248813723	436898	35	37652										
CCDC88A	0	genome.wustl.edu	37	chr2	55589532	55589532	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctatgtcctcctgcgacataTcagtcacttccatccattgc	5	15	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	55589532	55589532	T	C	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.539	p.D180G	0.633	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	79	0	0	145	155	51.32	-	-	-	C	55589532	T	C	55589532	3	2	346	1	0	0	0	0	1	0	0	0	2890	1435	50	5	5180	5	CCDC88A	2	55589532	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09		55589532	187609841	36	37653										
AFF3	0	genome.wustl.edu	37	chr2	100182032	100182032	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccattgcatttccacactcGataaacgacaatgctgcttc	5	13	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	100182032	100182032	G	A	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	silent	c.3111	p.I1037	0.760	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	93	0	0	87	100	53.48	-	-	-	A	100182032	G	A	100182032	2	1	346	1	0	0	0	0	0	0	0	1	358	1048	37	1		1	AFF3	2	100182032	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	44592500	100182032	143017341	37	37654										
RGPD3	0	genome.wustl.edu	37	chr2	107049714	107049714	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catgactgacttaagcatctCttttacagactccaggggca	8	11	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	107049714	107049714	C	G	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.2233	p.E745Q	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	179	0	0	320	327	50.54	-	-	-	G	107049714	C	G	107049714	3	3	346	1	0	0	0	0	1	0	0	0	13370	922	32	2	3075	2	RGPD3	2	107049714	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	6867682	107049714	136149659	38	37655										
RGPD3	0	genome.wustl.edu	37	chr2	107068731	107068731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagcataagattagcataggCcagcagtaagtctgtattgg	11	6	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	107068731	107068731	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.712	p.A238T	0.999	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	21	0	0	28	11	28.21	-	-	-	T	107068731	C	T	107068731	3	4	346	1	0	0	0	0	1	0	0	0	13370	739	26	4	4636	4	RGPD3	2	107068731	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	19017	107068731	136130642	39	37656										
RGPD4	0	genome.wustl.edu	37	chr2	108488742	108488742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagggacagaaagagtatggGtgtggactgcatgtgatttt	15	3	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	108488742	108488742	G	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.4282	p.V1428L	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	59	0	0	0	69	100	-	-	-	T	108488742	G	T	108488742	3	4	346	1	0	0	0	0	1	0	0	0	13371	1261	44	4	4360	4	RGPD4	2	108488742	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1420011	108488742	134710631	40	37657										
LIMS1	0	genome.wustl.edu	37	chr2	109293130	109293130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tatgagaggaaaggcctggcAtattgtgaaactcactataa	10	6	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	109293130	109293130	A	G	SNP	LIMS1	ENST00000542845	human	ensembl	69_37n	1	known	silent	c.900	p.A300	0.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756	53	0	0	90	19	17.43	-	-	-	G	109293130	A	G	109293130	2	3	346	1	0	0	0	0	0	0	0	1	8858	204	8	5		5	LIMS1	2	109293130	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	804388	109293130	133906243	41	37658										
WDR33	0	genome.wustl.edu	37	chr2	128477151	128477151	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccgtgtcccagtagtccaccTggagggtgaggtcctctcat	12	13	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	128477151	128477151	T	C	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	silent	c.2448	p.P816	0.340	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	15	0	0	13	8	38.1	-	-	-	C	128477151	T	C	128477151	2	2	346	1	0	0	0	0	0	0	0	1	17384	1567	55	5		5	WDR33	2	128477151	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	19184021	128477151	114722222	42	37659										
RAB6C	0	genome.wustl.edu	37	chr2	130738163	130738163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttattgaaactagggcaaaaGctggatacaatgtaaagcag	10	5	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	130738163	130738163	G	A	SNP	RAB6C	ENST00000410061	human	ensembl	69_37n	1	known	missense	c.475	p.A159T	0.996	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6C	HGNC	ENSG00000222014	291	0	0	155	115	42.59	-	-	-	A	130738163	G	A	130738163	3	1	346	1	0	0	0	0	1	0	0	0	13036	971	34	4	477	4	RAB6C	2	130738163	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2261012	130738163	112461210	43	37660										
TUBA3E	0	genome.wustl.edu	37	chr2	130951837	130951837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agtcagaatgttccagggtcGtgtgggtggttaggatggag	18	4	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	130951837	130951837	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	missense	c.578	p.T193M	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	167	1	0.6	18	89	83.18	-	-	-	A	130951837	G	A	130951837	3	1	346	1	0	0	0	0	1	0	0	0	16845	1145	40	1	782	1	TUBA3E	2	130951837	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	213674	130951837	112247536	44	37661										
POTEE	0	genome.wustl.edu	37	chr2	132021023	132021023	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agactggagctagacacaatGaaacatcagagccagctaag	10	9	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	132021023	132021023	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	missense	c.1995	p.M665I	0.000	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	35	0	0	77	16	17.2	-	-	-	A	132021023	G	A	132021023	3	1	346	1	0	0	0	0	1	0	0	0	12338	1290	45	2	2053	2	POTEE	2	132021023	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1069186	132021023	111178350	45	37662										
BAZ2B	0	genome.wustl.edu	37	chr2	160176904	160176904	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaaaacaagcctgacatctaGagcaaaggtttcaaggtttg	9	7	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	160176904	160176904	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.6379	p.L2127V	0.990	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	33	0	0	85	80	48.48	-	-	-	C	160176904	G	C	160176904	3	2	346	1	0	0	0	0	1	0	0	0	1336	933	33	2	131	2	BAZ2B	2	160176904	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	28155881	160176904	83022469	46	37663										
TTN	0	genome.wustl.edu	37	chr2	179664220	179664220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tatggcagctttacctgaccGgagatggggtcggtgcccgc	15	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	179664220	179664220	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.908	p.P303L	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	46	0	0	15	26	63.41	-	-	-	A	179664220	G	A	179664220	3	1	346	1	0	0	0	0	1	0	0	0	16832	1116	39	1	110508	1	TTN	2	179664220	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	19487316	179664220	63535153	47	37664										
SPAG16	0	genome.wustl.edu	37	chr2	214181974	214181974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tacagaaaggagtgactgaaCttagaactgttgggaatgtt	12	4	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	214181974	214181974	C	T	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	missense	c.430	p.L144F	0.007	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	101	0	0	220	57	20.43	-	-	-	T	214181974	C	T	214181974	3	4	346	1	0	0	0	0	1	0	0	0	15069	565	20	4	448	4	SPAG16	2	214181974	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	34517754	214181974	29017399	48	37665										
RQCD1	0	genome.wustl.edu	37	chr2	219457092	219457092	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttggcttatatatgtcagacGtatgagcgtttctcccatgt	9	8	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	219457092	219457092	G	A	SNP	RQCD1	ENST00000509807	human	ensembl	69_37n	1	known	silent	c.702	p.T234	0.903	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580	232	0	0	225	158	41.25	-	-	-	A	219457092	G	A	219457092	2	1	346	1	0	0	0	0	0	0	0	1	13756	1132	40	1		1	RQCD1	2	219457092	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5275118	219457092	23742281	49	37666										
NHEJ1	0	genome.wustl.edu	37	chr2	220022358	220022358	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgggcgaaggagattatccaAatgacagaggaaagctgcag	14	6	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	220022358	220022358	A	G	SNP	NHEJ1	ENST00000409720	human	ensembl	69_37n	-1	known	silent	c.226	p.L76	1.000	pfam_XLF/Cernunnos	pfam_XLF/Cernunnos	-	no_errors	NHEJ1	HGNC	ENSG00000187736	97	0	0	43	37	46.25	-	-	-	G	220022358	A	G	220022358	2	3	346	1	0	0	0	0	0	0	0	1	10474	11	1	5		5	NHEJ1	2	220022358	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	565266	220022358	23177015	50	37667										
SLC23A3	0	genome.wustl.edu	37	chr2	220030022	220030022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcaggcatgtggaggtggggGaggcaaatgcagcagccggc	20	8	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	220030022	220030022	G	A	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.1060	p.P354S	0.001	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	15	0	0	2	5	71.43	-	-	-	A	220030022	G	A	220030022	3	1	346	1	0	0	0	0	1	0	0	0	14553	1174	41	2	816	2	SLC23A3	2	220030022	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7664	220030022	23169351	51	37668										
CCDC140	0	genome.wustl.edu	37	chr2	223168793	223168793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agccaactaaacggagtaaaCgcaacaggtggaggaggcag	14	8	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	223168793	223168793	C	T	SNP	CCDC140	ENST00000295226	human	ensembl	69_37n	1	known	missense	c.172	p.R58C	0.001	NULL	NULL	-	no_errors	CCDC140	HGNC	ENSG00000163081	49	0	0	27	21	43.75	-	-	-	T	223168793	C	T	223168793	3	4	346	1	0	0	0	0	1	0	0	0	2799	536	19	1	174	1	CCDC140	2	223168793	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	3138771	223168793	20030580	52	37669										
WDR69	0	genome.wustl.edu	37	chr2	228769717	228769717	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcatcacggggtcttttgatCataccgttgtagtgtgggac	12	8	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	228769717	228769717	C	T	SNP	WDR69	ENST00000309931	human	ensembl	69_37n	1	known	missense	c.721	p.H241Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR69	HGNC	ENSG00000123977	137	0	0	132	113	46.12	-	-	-	T	228769717	C	T	228769717	3	4	346	1	0	0	0	0	1	0	0	0	17416	826	29	2	751	2	WDR69	2	228769717	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	5600924	228769717	14429656	53	37670										
DIS3L2	0	genome.wustl.edu	37	chr2	233028305	233028305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctcaaggcctgccatggacaAttccaccagaggagttcagc	10	13	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	233028305	233028305	A	G	SNP	DIS3L2	ENST00000325385	human	ensembl	69_37n	1	known	missense	c.1087	p.I363V	1.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L2	HGNC	ENSG00000144535	42	0	0	44	41	48.24	-	-	-	G	233028305	A	G	233028305	3	3	346	1	0	0	0	0	1	0	0	0	4573	101	4	5	1117	5	DIS3L2	2	233028305	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	4258588	233028305	10171068	54	37671										
LRRFIP1	0	genome.wustl.edu	37	chr2	238672522	238672522	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcagaaccaaagagcgaagaCgcagatcgctgcaccctgcc	11	14	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	238672522	238672522	C	T	SNP	LRRFIP1	ENST00000392000	human	ensembl	69_37n	1	known	silent	c.2166	p.D722	0.000	NULL	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	72	0	0	13	19	59.38	-	-	-	T	238672522	C	T	238672522	2	4	346	1	0	0	0	0	0	0	0	1	9093	535	19	1		1	LRRFIP1	2	238672522	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	5644217	238672522	4526851	55	37672										
AQP12A	0	genome.wustl.edu	37	chr2	241631413	241631413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caggcgggcctccaaggcccTgctcccagtgggcgcctatg	14	16	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	241631413	241631413	T	G	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.83	p.L28R	0.987	pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	28	0	0	22	13	37.14	-	-	-	G	241631413	T	G	241631413	3	3	346	1	0	0	0	0	1	0	0	0	826	1580	55	5	85	5	AQP12A	2	241631413	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2958891	241631413	1567960	56	37673										
PASK	0	genome.wustl.edu	37	chr2	242054403	242054403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cactgatctttgcagccaccGgacccaggcacccaggcctg	10	17	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	242054403	242054403	G	A	SNP	PASK	ENST00000403638	human	ensembl	69_37n	-1	putative	missense	c.3388	p.R1130W	0.000	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_PAS_fold,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	13	0	0	12	13	52	-	-	-	A	242054403	G	A	242054403	3	1	346	1	0	0	0	0	1	0	0	0	11545	1131	39	1		1	PASK	2	242054403	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	422990	242054403	1144970	57	37674										
ANO7	0	genome.wustl.edu	37	chr2	242163556	242163556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acggttcccaaggccagccaGctgcagcagtgacgcctgga	13	14	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	2	242163556	242163556	G	T	SNP	ANO7	ENST00000274979	human	ensembl	69_37n	1	known	missense	c.2790	p.Q930H	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205	52	0	0	8	17	68	-	-	-	T	242163556	G	T	242163556	3	4	346	1	0	0	0	0	1	0	0	0	701	962	34	4	2960	4	ANO7	2	242163556	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	109153	242163556	1035817	58	37675										
FGD5	0	genome.wustl.edu	37	chr3	14861300	14861300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcctgacaggcccacggaggAcatgggacaggatgctgagg	16	10	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	14861300	14861300	A	G	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.722	p.D241G	0.112	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	34	0	0	19	6	24	-	-	-	G	14861300	A	G	14861300	3	3	346	1	0	0	0	0	1	0	0	0	5882	275	10	5	724	5	FGD5	3	14861300	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		14861300	183161130	59	37676										
OSBPL10	0	genome.wustl.edu	37	chr3	31871604	31871604	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgcaggcgacttgtgatgCgtgattgtgacaacaccggg	15	9	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	31871604	31871604	C	T	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	silent	c.657	p.T219	0.998	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	26	0	0	19	21	52.5	-	-	-	T	31871604	C	T	31871604	2	4	346	1	0	0	0	0	0	0	0	1	11348	755	27	1		1	OSBPL10	3	31871604	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	17010304	31871604	166150826	60	37677										
XIRP1	0	genome.wustl.edu	37	chr3	39227620	39227620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccggggatcacttccacccCcaggccttatgttgctttgg	10	14	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	39227620	39227620	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.3317	p.G1106E	0.158	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	22	0	0	5	6	54.55	-	-	-	T	39227620	C	T	39227620	3	4	346	1	0	0	0	0	1	0	0	0	17526	623	22	4	2218	4	XIRP1	3	39227620	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7356016	39227620	158794810	61	37678										
ZNF620	0	genome.wustl.edu	37	chr3	40554007	40554007	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctcagaggtatctgtccagGtgagcatgagaacccactag	11	10	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	40554007	40554007	G	T	SNP	ZNF620	ENST00000314529	human	ensembl	69_37n	1	known	splice_site	c.265+1	e3+1	0.919	-	-	-	no_errors	ZNF620	HGNC	ENSG00000177842	75	0	0	92	29	23.97	-	-	-	T	40554007	G	T	40554007	5	4	346	1	0	0	0	0	0	0	1	0	18140	1275	44	4	276	4	ZNF620	3	40554007	Splice_Site	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1326387	40554007	157468423	62	37679										
BSN	0	genome.wustl.edu	37	chr3	49699083	49699083	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgggcgtccagggaaggagCctggagaaccaggtgtcctt	17	9	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	49699083	49699083	C	G	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.9805	p.P3269A	0.847	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	11	0	0	9	4	30.77	-	-	-	G	49699083	C	G	49699083	3	3	346	1	0	0	0	0	1	0	0	0	1538	739	26	4	9827	4	BSN	3	49699083	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	9145076	49699083	148323347	63	37680										
MUSTN1	0	genome.wustl.edu	37	chr3	52867220	52867220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgaagggcctggactgtgGgggagggtggcagccccaga	20	9	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	52867220	52867220	G	A	SNP	MUSTN1	ENST00000513520	human	ensembl	69_37n	-1	putative	missense	c.121	p.P41S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MUSTN1	HGNC	ENSG00000243696	10	0	0	9	10	52.63	-	-	-	A	52867220	G	A	52867220	3	1	346	1	0	0	0	0	1	0	0	0	10062	1247	43	4		4	MUSTN1	3	52867220	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3168137	52867220	145155210	64	37681										
CCDC80	0	genome.wustl.edu	37	chr3	112329033	112329034	+	Frame_Shift_Ins	INS	-	-	A													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caatttttttctgtgcccagINSaaaaaaaaaaagaaaaaaac							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	112329033	112329034	-	A	INS	CCDC80	ENST00000479368	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.51_50	p.W18fs	0.003:0.443	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	CCDC80	HGNC	ENSG00000091986	17	0	0	23	3	11.54	-	-	-	A	112329034	-	A	112329033	7	5	346	1	0	1	1	0	0	0	0	0	2881	957	33	0		0	CCDC80	3	112329033	Frame_Shift_Ins	INS	-	TCGA-AO-A12E-01A-11D-A10M-09	59461813	112329033	85693397	65	37682										
ADCY5	0	genome.wustl.edu	37	chr3	123019109	123019109	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgcaggaacacggagcaggCcagcaggctgagcagcacgc	15	13	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	123019109	123019109	C	A	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.2758	p.A920S	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	10	0	0	4	9	69.23	-	-	-	A	123019109	C	A	123019109	3	1	346	1	0	0	0	0	1	0	0	0	297	739	26	4	1055	4	ADCY5	3	123019109	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	10690076	123019109	75003321	66	37683										
RPN1	0	genome.wustl.edu	37	chr3	128356811	128356811	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aataatggttcccctcaaacAccacaaactgtttctctgac	4	13	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	128356811	128356811	A	T	SNP	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	missense	c.464	p.V155E	1.000	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	152	0	0	86	76	46.91	-	-	-	T	128356811	A	T	128356811	3	4	346	1	0	0	0	0	1	0	0	0	13693	159	6	5	1391	5	RPN1	3	128356811	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	5337702	128356811	69665619	67	37684										
TOPBP1	0	genome.wustl.edu	37	chr3	133342223	133342223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagccggccatcttgcactgCgctgatatccaagctcattt	9	13	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	133342223	133342223	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.3007	p.A1003T	0.997	superfamily_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	40	0	0	74	87	54.04	-	-	-	T	133342223	C	T	133342223	3	4	346	1	0	0	0	0	1	0	0	0	16465	768	27	1	1605	1	TOPBP1	3	133342223	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4985412	133342223	64680207	68	37685										
ESYT3	0	genome.wustl.edu	37	chr3	138179496	138179496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctgaccaacctgctggatgCgccgggaatcaagtaggtgc	13	12	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	138179496	138179496	C	T	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	missense	c.782	p.A261V	0.176	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	26	0	0	30	27	47.37	-	-	-	T	138179496	C	T	138179496	3	4	346	1	0	0	0	0	1	0	0	0	5303	768	27	1	808	1	ESYT3	3	138179496	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4837273	138179496	59842934	69	37686										
ATR	0	genome.wustl.edu	37	chr3	142281651	142281651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	taaattctaaattttgcataCtcatcaactgcaaaggagct	5	8	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	142281651	142281651	C	T	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.593	p.S198N	0.076	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	57	0	0	55	46	45.54	-	-	-	T	142281651	C	T	142281651	3	4	346	1	0	0	0	0	1	0	0	0	1208	565	20	4	7517	4	ATR	3	142281651	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4102155	142281651	55740779	70	37687										
PLSCR2	0	genome.wustl.edu	37	chr3	146177815	146177815	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgggagcccaggtggtcagcCtgtttcccagtgtgtccagc	14	12	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	146177815	146177815	C	T	SNP	PLSCR2	ENST00000497985	human	ensembl	69_37n	-1	putative	silent	c.96	p.Q32	0.000	NULL	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746	66	0	0	0	58	100	-	-	-	T	146177815	C	T	146177815	2	4	346	1	0	0	0	0	0	0	0	1	12184	696	24	4		4	PLSCR2	3	146177815	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	3896164	146177815	51844615	71	37688										
SERP1	0	genome.wustl.edu	37	chr3	150264707	150264707	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aactacccgaggagccggggAgtctgatctgccttttcttg	12	11	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	150264707	150264707	A	C	SNP	SERP1	ENST00000491195	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SERP1	HGNC	ENSG00000120742	14	0	0	0	33	100	-	-	-	C	150264707	A	C	150264707	1	2	346	0	1	0	0	0	0	0	0	0	14172	319	11	5		5	SERP1	3	150264707	RNA	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	4086892	150264707	47757723	72	37689										
MED12L	0	genome.wustl.edu	37	chr3	151129262	151129262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctatgttcagcagcaggcctCgccgtacctgcagcccctga	10	16	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	151129262	151129262	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.6002	p.S2001L	0.646	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	48	0	0	14	23	62.16	-	-	-	T	151129262	C	T	151129262	3	4	346	1	0	0	0	0	1	0	0	0	9500	893	31	1	6156	1	MED12L	3	151129262	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	864555	151129262	46893168	73	37690										
IGSF10	0	genome.wustl.edu	37	chr3	151176331	151176331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgatgcgttccacattgggcGggatgctgtctgggatggaa	16	7	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	151176331	151176331	G	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.167	p.P56L	0.886	smart_LRR-contain_N	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	45	0	0	33	44	57.14	-	-	-	A	151176331	G	A	151176331	3	1	346	1	0	0	0	0	1	0	0	0	7651	1116	39	1	7776	1	IGSF10	3	151176331	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	47069	151176331	46846099	74	37691										
TNIK	0	genome.wustl.edu	37	chr3	170802953	170802953	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcatcttcatcagtgggagaCgtctggtatactctggggtc	12	9	6	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	170802953	170802953	C	T	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	silent	c.2952	p.T984	0.005	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	29	0	0	54	37	40.66	-	-	-	T	170802953	C	T	170802953	2	4	346	1	0	0	0	0	0	0	0	1	16408	523	19	1		1	TNIK	3	170802953	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	19626622	170802953	27219477	75	37692										
MUC20	0	genome.wustl.edu	37	chr3	195346621	195346621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtcagctgcacctgatgccaCgattgggaccccactcccca	9	17	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	195346621	195346621	C	T	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	missense	c.923	p.T308M	0.005	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	109	0	0	35	17	32.69	-	-	-	T	195346621	C	T	195346621	3	4	346	1	0	0	0	0	1	0	0	0	10048	551	19	1		1	MUC20	3	195346621	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	24543668	195346621	2675809	76	37693										
MUC4	0	genome.wustl.edu	37	chr3	195506446	195506446	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgaggaagtgctggtgacaGgaagaggggtggcgtgacct	19	6	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	195506446	195506446	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12005	p.P4002H	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	143	1	0.68	12	27	69.23	-	-	-	T	195506446	G	T	195506446	3	4	346	1	0	0	0	0	1	0	0	0	10050	1000	35	4		4	MUC4	3	195506446	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	159825	195506446	2515984	77	37694										
MUC4	0	genome.wustl.edu	37	chr3	195506760	195506760	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggggtggcgtgacgtgtggaTgctgaggaagtgtcggtgac	21	5	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	195506760	195506760	T	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.11691	p.A3897	0.455	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	156	0	0	10	9	47.37	-	-	-	A	195506760	T	A	195506760	2	1	346	1	0	0	0	0	0	0	0	1	10050	1451	51	5		5	MUC4	3	195506760	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	314	195506760	2515670	78	37695										
MUC4	0	genome.wustl.edu	37	chr3	195509212	195509212	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggcgtgacctgtggatgctGaggaagtgtcggtgacagga	18	6	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	195509212	195509212	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.9239	p.S3080L	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	1375	0	0	62	23	27.06	-	-	-	A	195509212	G	A	195509212	3	1	346	1	0	0	0	0	1	0	0	0	10050	1294	45	2		2	MUC4	3	195509212	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2452	195509212	2513218	79	37696										
MUC4	0	genome.wustl.edu	37	chr3	195513365	195513365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aacgtcggtgacaggaagacGggtggtgtcatctgtggtag	17	6	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	195513365	195513365	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.5086	p.R1696C	0.019	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	922	0	0	63	41	39.05	-	-	-	A	195513365	G	A	195513365	3	1	346	1	0	0	0	0	1	0	0	0	10050	1116	39	1		1	MUC4	3	195513365	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4153	195513365	2509065	80	37697										
LMLN	0	genome.wustl.edu	37	chr3	197765456	197765456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agatctttgttcctgttcctCgagcctggtggtcaccctct	9	13	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	3	197765456	197765456	C	T	SNP	LMLN	ENST00000330198	human	ensembl	69_37n	1	known	missense	c.1886	p.S629L	1.000	NULL	pfam_Peptidase_M8	-	no_errors	LMLN	HGNC	ENSG00000185621	268	0	0	246	237	49.07	-	-	-	T	197765456	C	T	197765456	3	4	346	1	0	0	0	0	1	0	0	0	8903	893	31	1	2063	1	LMLN	3	197765456	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2252091	197765456	256974	81	37698										
PIGG	0	genome.wustl.edu	37	chr4	532976	532976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtcatgcttgcttctgctacGcactgatttgttctattcca	7	11	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	532976	532976	G	A	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.2770	p.A924T	1.000	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	75	0	0	99	92	47.92	-	-	-	A	532976	G	A	532976	3	1	346	1	0	0	0	0	1	0	0	0	11962	1087	38	1	2820	1	PIGG	4	532976	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		532976	190621300	82	37699										
SORCS2	0	genome.wustl.edu	37	chr4	7738913	7738913	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtccagggtgaggagtttatAgatgatgatctcgactcgca	13	7	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	7738913	7738913	A	G	SNP	SORCS2	ENST00000329016	human	ensembl	69_37n	1	known	missense	c.2916	p.I972M	0.999	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	12	0	0	8	6	42.86	-	-	-	G	7738913	A	G	7738913	3	3	346	1	0	0	0	0	1	0	0	0	15020	435	15	5		5	SORCS2	4	7738913	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	7205937	7738913	183415363	83	37700										
CC2D2A	0	genome.wustl.edu	37	chr4	15597727	15597727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gatttggtttaatattcaacGatatgaatctccactaagga	7	6	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	15597727	15597727	G	A	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.4334	p.R1445Q	0.769	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	70	0	0	114	104	47.71	-	-	-	A	15597727	G	A	15597727	3	1	346	1	0	0	0	0	1	0	0	0	2753	1058	37	1	4667	1	CC2D2A	4	15597727	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7858814	15597727	175556549	84	37701										
TLR1	0	genome.wustl.edu	37	chr4	38798935	38798935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagctctggaagaaatcagcCgatgggtgggaaactgaatt	13	7	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	38798935	38798935	C	T	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	silent	c.1518	p.S506	0.002	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	122	0	0	124	128	50.79	-	-	-	T	38798935	C	T	38798935	2	4	346	1	0	0	0	0	0	0	0	1	16044	639	23	1		1	TLR1	4	38798935	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	23201208	38798935	152355341	85	37702										
GABRA4	0	genome.wustl.edu	37	chr4	46981081	46981081	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaacaggtccaaagctggtGacatatatgtcagttttcac	9	8	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	46981081	46981081	G	T	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	silent	c.240	p.V80	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	49	0	0	123	107	46.52	-	-	-	T	46981081	G	T	46981081	2	4	346	1	0	0	0	0	0	0	0	1	6212	1277	45	2		2	GABRA4	4	46981081	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8182146	46981081	144173195	86	37703										
UGT2B17	0	genome.wustl.edu	37	chr4	69416556	69416556	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atagggatcccatggtagatTgcctcatagatgccattggt	11	8	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	69416556	69416556	T	C	SNP	UGT2B17	ENST00000317746	human	ensembl	69_37n	-1	known	silent	c.1152	p.A384	0.720	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888	45	0	0	116	62	34.64	-	-	-	C	69416556	T	C	69416556	2	2	346	1	0	0	0	0	0	0	0	1	17056	1799	63	5		5	UGT2B17	4	69416556	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	22435475	69416556	121737720	87	37704										
UGT2A3	0	genome.wustl.edu	37	chr4	69798466	69798466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcccctgaactctggacaaaAttttccatttcctgaagata	5	11	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	69798466	69798466	A	G	SNP	UGT2A3	ENST00000251566	human	ensembl	69_37n	-1	known	silent	c.876	p.N292	0.714	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220	130	0	0	81	76	48.41	-	-	-	G	69798466	A	G	69798466	2	3	346	1	0	0	0	0	0	0	0	1	17052	98	4	5		5	UGT2A3	4	69798466	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	381910	69798466	121355810	88	37705										
THAP9	0	genome.wustl.edu	37	chr4	83839634	83839636	+	In_Frame_Del	DEL	AAG	AAG	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggtcactattatttgttaaaAagaagaatggtttgcatttt							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	83839634	83839636	AAG	-	DEL	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	in_frame_del	c.2269_2271	p.K758in_frame_del	1.000:0.994:0.947	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	58	0	0	51	39	43.33	-	-	-	-	83839636	AAG	-	83839634	7	5	346	1	0	1	0	1	0	0	0	0	15946	15	1	0	2287	0	THAP9	4	83839634	In_Frame_Del	DEL	AAG	TCGA-AO-A12E-01A-11D-A10M-09	14041168	83839634	107314642	89	37706										
ADH6	0	genome.wustl.edu	37	chr4	100129871	100129871	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaagcagaagtctataccaGcatctgtcatatcaaataaa	5	9	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	100129871	100129871	G	C	SNP	ADH6	ENST00000394899	human	ensembl	69_37n	-1	known	missense	c.782	p.A261G	0.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955	45	0	0	68	68	50	-	-	-	C	100129871	G	C	100129871	3	2	346	1	0	0	0	0	1	0	0	0	312	971	34	4	365	4	ADH6	4	100129871	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	16290237	100129871	91024405	90	37707										
RRH	0	genome.wustl.edu	37	chr4	110756591	110756591	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcacggtcgtggctgtggacCgatacctgaccatctgcctt	11	13	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	110756591	110756591	C	T	SNP	RRH	ENST00000317735	human	ensembl	69_37n	1	known	nonsense	c.367	p.R123*	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Peropsin,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	RRH	HGNC	ENSG00000180245	148	0	0	121	102	45.74	-	-	-	T	110756591	C	T	110756591	4	4	346	1	0	0	0	0	0	1	0	0	13766	644	23	1	377	1	RRH	4	110756591	Nonsense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	10626720	110756591	80397685	91	37708										
ANK2	0	genome.wustl.edu	37	chr4	114278329	114278329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atcttcatcctctttgcctcAttgtttggtatctgaaggaa	7	9	5	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	114278329	114278329	A	G	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.8555	p.H2852R	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	51	0	0	39	48	55.17	-	-	-	G	114278329	A	G	114278329	3	3	346	1	0	0	0	0	1	0	0	0	621	217	8	5	8770	5	ANK2	4	114278329	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	3521738	114278329	76875947	92	37709										
KIAA1109	0	genome.wustl.edu	37	chr4	123176437	123176437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catcattgatgatgctacaaTggtaagttactgaaactaca	7	7	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	123176437	123176437	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.6377	p.M2126T	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	59	0	0	82	83	50.3	-	-	-	C	123176437	T	C	123176437	3	2	346	1	0	0	0	0	1	0	0	0	8260	1478	51	5	6527	5	KIAA1109	4	123176437	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	8898108	123176437	67977839	93	37710										
KIAA1109	0	genome.wustl.edu	37	chr4	123268873	123268873	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccagggacagtaggacagagCctaaaatccccagcttccat	9	13	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	123268873	123268873	C	G	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.13068	p.S4356R	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	59	0	0	90	24	21.05	-	-	-	G	123268873	C	G	123268873	3	3	346	1	0	0	0	0	1	0	0	0	8260	738	26	4	13362	4	KIAA1109	4	123268873	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	92436	123268873	67885403	94	37711										
NR3C2	0	genome.wustl.edu	37	chr4	149357328	149357328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagaggagttccctgggtgaTtgggctgtgcactggaaaac	15	8	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	149357328	149357328	T	C	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.685	p.I229V	0.641	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	93	0	0	26	30	53.57	-	-	-	C	149357328	T	C	149357328	3	2	346	1	0	0	0	0	1	0	0	0	10704	1493	52	5	2301	5	NR3C2	4	149357328	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	26088455	149357328	41796948	95	37712										
PLRG1	0	genome.wustl.edu	37	chr4	155466998	155466998	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaaaacttactgaattcatcGctgtaggctgtggacggtca	10	8	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	155466998	155466998	G	A	SNP	PLRG1	ENST00000506192	human	ensembl	69_37n	-1	known	nonsense	c.391	p.R131*	0.003	NULL	NULL	-	no_errors	PLRG1	HGNC	ENSG00000171566	27	0	0	54	54	50	-	-	-	A	155466998	G	A	155466998	4	1	346	1	0	0	0	0	0	1	0	0	12180	1087	38	1	1102	1	PLRG1	4	155466998	Nonsense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6109670	155466998	35687278	96	37713										
NPY2R	0	genome.wustl.edu	37	chr4	156135164	156135164	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggtggaacaatacgggccaCaaacaactcctagaggtgaa	11	9	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	156135164	156135164	C	G	SNP	NPY2R	ENST00000329476	human	ensembl	69_37n	1	known	missense	c.73	p.Q25E	0.801	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_NPY2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NPY2R	HGNC	ENSG00000185149	115	0	0	95	69	41.57	-	-	-	G	156135164	C	G	156135164	3	3	346	1	0	0	0	0	1	0	0	0	10682	479	17	4	75	4	NPY2R	4	156135164	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	668166	156135164	35019112	97	37714										
FAT1	0	genome.wustl.edu	37	chr4	187584680	187584680	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctctatgaacgatgaaagaGgcacgacaccctgatcggtt	10	10	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	4	187584680	187584680	G	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.3353	p.P1118R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	35	0	0	56	67	54.47	-	-	-	C	187584680	G	C	187584680	3	2	346	1	0	0	0	0	1	0	0	0	5735	1000	35	4	10513	4	FAT1	4	187584680	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	31449516	187584680	3569596	98	37715										
NKD2	0	genome.wustl.edu	37	chr5	1036900	1036900	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgtccagtagtgtggatggcCggcagtgtggacaacaggca	16	9	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	1036900	1036900	C	T	SNP	NKD2	ENST00000382730	human	ensembl	69_37n	1	known	silent	c.6	p.A2	0.009	NULL	NULL	-	no_errors	NKD2	HGNC	ENSG00000145506	15	0	0	2	4	66.67	-	-	-	T	1036900	C	T	1036900	2	4	346	1	0	0	0	0	0	0	0	1	10514	667	23	1		1	NKD2	5	1036900	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		1036900	179878360	99	37716										
ADAMTS12	0	genome.wustl.edu	37	chr5	33751454	33751454	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggtcatgttttaataaaacAaccaaaagaacaaaacagat	5	6	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	33751454	33751454	A	T	SNP	ADAMTS12	ENST00000515401	human	ensembl	69_37n	-1	known	nonsense	c.689	p.L230*	0.001	NULL	pfam_Peptidase_M12B_N	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	69	0	0	50	82	62.12	-	-	-	T	33751454	A	T	33751454	4	4	346	1	0	0	0	0	0	1	0	0	257	145	5	5		5	ADAMTS12	5	33751454	Nonsense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	32714554	33751454	147163806	100	37717										
UGT3A2	0	genome.wustl.edu	37	chr5	36039649	36039649	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggtggacatctttgggccaAtgagaacactgacacttcca	10	10	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	36039649	36039649	A	G	SNP	UGT3A2	ENST00000282507	human	ensembl	69_37n	-1	known	silent	c.1005	p.H335	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671	38	0	0	78	45	36.59	-	-	-	G	36039649	A	G	36039649	2	3	346	1	0	0	0	0	0	0	0	1	17061	98	4	5		5	UGT3A2	5	36039649	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	2288195	36039649	144875611	101	37718										
C5orf44	0	genome.wustl.edu	37	chr5	64957916	64957916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttaggttgtctttggaggcaAtaccagataccgtaaacctt	9	8	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	64957916	64957916	A	G	SNP	C5orf44	ENST00000545191	human	ensembl	69_37n	1	known	missense	c.940	p.I314V	1.000	NULL	pfam_DUF974	-	no_errors	C5orf44	HGNC	ENSG00000113597	91	0	0	241	182	43.03	-	-	-	G	64957916	A	G	64957916	3	3	346	1	0	0	0	0	1	0	0	0	2324	101	4	5	979	5	C5orf44	5	64957916	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	28918267	64957916	115957344	102	37719										
PIK3R1	0	genome.wustl.edu	37	chr5	67589188	67589188	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgagatgggaaatatggcttCtctgacccattaaccttcag	9	10	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	67589188	67589188	C	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	silent	c.1176	p.F392	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	83	0	0	103	132	56.17	-	-	-	T	67589188	C	T	67589188	2	4	346	1	0	0	0	0	0	0	0	1	11992	912	32	2		2	PIK3R1	5	67589188	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2631272	67589188	113326072	103	37720										
BDP1	0	genome.wustl.edu	37	chr5	70818170	70818170	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaatgacaagaaggaaattCcaaaaggctaagccaaattt	7	7	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	70818170	70818170	C	T	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	silent	c.5046	p.F1682	0.993	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	116	0	0	66	22	25	-	-	-	T	70818170	C	T	70818170	2	4	346	1	0	0	0	0	0	0	0	1	1399	854	30	2		2	BDP1	5	70818170	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	3228982	70818170	110097090	104	37721										
MRPS27	0	genome.wustl.edu	37	chr5	71616004	71616004	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagagctgaggaagaaccacTtgccgcgccaggagcatccc	13	13	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	71616004	71616004	T	C	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	silent	c.45	p.Q15	0.000	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	44	0	0	13	9	40.91	-	-	-	C	71616004	T	C	71616004	2	2	346	1	0	0	0	0	0	0	0	1	9910	1606	56	5		5	MRPS27	5	71616004	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	797834	71616004	109299256	105	37722										
GFM2	0	genome.wustl.edu	37	chr5	74032756	74032756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccctcccgttcggctctacGagctgcagctaatgcactgg	10	15	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	74032756	74032756	G	A	SNP	GFM2	ENST00000296805	human	ensembl	69_37n	-1	known	missense	c.1375	p.R459C	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347	40	0	0	96	126	56.76	-	-	-	A	74032756	G	A	74032756	3	1	346	1	0	0	0	0	1	0	0	0	6394	1058	37	1	1024	1	GFM2	5	74032756	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2416752	74032756	106882504	106	37723										
MSH3	0	genome.wustl.edu	37	chr5	79961077	79961077	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagacagaatctctgcaggaGagatttgcagttctgccaaa	10	9	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	79961077	79961077	G	T	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.474	p.E158D	0.297	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	77	0	0	75	52	40.94	-	-	-	T	79961077	G	T	79961077	3	4	346	1	0	0	0	0	1	0	0	0	9943	933	33	2	484	2	MSH3	5	79961077	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5928321	79961077	100954183	107	37724										
CKMT2	0	genome.wustl.edu	37	chr5	80555035	80555035	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgaaccttggaacaggactaCgagctggtgtccacgttagg	13	10	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	80555035	80555035	C	A	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	silent	c.976	p.R326	0.965	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	46	0	0	51	103	66.45	-	-	-	A	80555035	C	A	80555035	2	1	346	1	0	0	0	0	0	0	0	1	3481	528	19	3		3	CKMT2	5	80555035	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	593958	80555035	100360225	108	37725										
NUDT12	0	genome.wustl.edu	37	chr5	102895777	102895777	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaattggactatctctgggTgcccattccttgccgcatac	9	12	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	102895777	102895777	T	A	SNP	NUDT12	ENST00000230792	human	ensembl	69_37n	-1	known	missense	c.173	p.H58L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874	37	0	0	79	100	55.56	-	-	-	A	102895777	T	A	102895777	3	1	346	1	0	0	0	0	1	0	0	0	10801	1696	59	5	1239	5	NUDT12	5	102895777	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	22340742	102895777	78019483	109	37726										
DMXL1	0	genome.wustl.edu	37	chr5	118484655	118484655	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtagtataactgtacctggtAggcctgtagaagttagctgt	12	6	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	118484655	118484655	A	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.3133	p.R1045G	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	45	0	0	63	57	47.5	-	-	-	G	118484655	A	G	118484655	3	3	346	1	0	0	0	0	1	0	0	0	4630	411	15	5	3203	5	DMXL1	5	118484655	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	15588878	118484655	62430605	110	37727										
CEP120	0	genome.wustl.edu	37	chr5	122717863	122717863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcttccattcctctgcaagaGcctgcatatgagccagttct	7	13	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	122717863	122717863	G	A	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.2045	p.A682V	1.000	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	192	0	0	256	381	59.72	-	-	-	A	122717863	G	A	122717863	3	1	346	1	0	0	0	0	1	0	0	0	3275	971	34	4	943	4	CEP120	5	122717863	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4233208	122717863	58197397	111	37728										
P4HA2	0	genome.wustl.edu	37	chr5	131553427	131553427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggaaggccaactaaggatgGttggggacttaggacacctc	14	8	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	131553427	131553427	G	A	SNP	P4HA2	ENST00000433701	human	ensembl	69_37n	-1	known	missense	c.80	p.T27I	0.003	NULL	NULL	-	no_errors	P4HA2	HGNC	ENSG00000072682	63	0	0	67	37	35.58	-	-	-	A	131553427	G	A	131553427	3	1	346	1	0	0	0	0	1	0	0	0	11430	1276	44	4		4	P4HA2	5	131553427	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8835564	131553427	49361833	112	37729										
TCF7	0	genome.wustl.edu	37	chr5	133451688	133451688	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atgcattacccacccccctcGggagcagggcagcaccccca	9	19	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	133451688	133451688	G	A	SNP	TCF7	ENST00000321584	human	ensembl	69_37n	1	known	silent	c.405	p.S135	0.297	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7	HGNC	ENSG00000081059	84	0	0	11	24	68.57	-	-	-	A	133451688	G	A	133451688	2	1	346	1	0	0	0	0	0	0	0	1	15791	1103	39	1		1	TCF7	5	133451688	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1898261	133451688	47463572	113	37730										
WDR55	0	genome.wustl.edu	37	chr5	140049218	140049218	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctcaggaagaaaaggaggaGactggggatgacagtgactg	17	5	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	140049218	140049218	G	T	SNP	WDR55	ENST00000358337	human	ensembl	69_37n	1	known	missense	c.1131	p.E377D	0.170	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314	79	0	0	13	13	50	-	-	-	T	140049218	G	T	140049218	3	4	346	1	0	0	0	0	1	0	0	0	17404	933	33	2	1157	2	WDR55	5	140049218	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6597530	140049218	40866042	114	37731										
PCDHA11	0	genome.wustl.edu	37	chr5	140250655	140250655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggtgaaggatcacggtgagcCggcgctgacggccacggcca	17	12	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	140250655	140250655	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1967	p.P656L	0.928	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	18	0	0	3	7	70	-	-	-	T	140250655	C	T	140250655	3	4	346	1	0	0	0	0	1	0	0	0	11594	652	23	1	1969	1	PCDHA11	5	140250655	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	201437	140250655	40664605	115	37732										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725481	140725481	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgcacacgggcgaggtgcgCacggcgcgagccctgctgga	17	14	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	140725481	140725481	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.1881	p.R627	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	12	0	0	2	3	60	-	-	-	T	140725481	C	T	140725481	2	4	346	1	0	0	0	0	0	0	0	1	11628	697	25	4		4	PCDHGA3	5	140725481	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	474826	140725481	40189779	116	37733										
PCDHGA8	0	genome.wustl.edu	37	chr5	140774749	140774749	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gggctgtgagaaaaatgattCtttgttaacatccgtagatt	10	5	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	140774749	140774749	C	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	69_37n	1	known	missense	c.2369	p.S790F	0.036	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	47	0	0	66	34	34	-	-	-	T	140774749	C	T	140774749	3	4	346	1	0	0	0	0	1	0	0	0	11633	913	32	2	2371	2	PCDHGA8	5	140774749	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	49268	140774749	40140511	117	37734										
FAT2	0	genome.wustl.edu	37	chr5	150946277	150946277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaccagcatcagggtcagtgGctgctaggcgggccaagggg	17	10	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	150946277	150946277	G	C	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.2216	p.A739G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	63	0	0	43	12	21.82	-	-	-	C	150946277	G	C	150946277	3	2	346	1	0	0	0	0	1	0	0	0	5736	1203	42	4	10925	4	FAT2	5	150946277	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	10171528	150946277	29968983	118	37735										
GRK6	0	genome.wustl.edu	37	chr5	176863207	176863207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagatcaagcgggaggaggtGgagcggctggtgaaggaggt	21	4	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	5	176863207	176863207	G	A	SNP	GRK6	ENST00000528793	human	ensembl	69_37n	1	known	silent	c.1191	p.V397	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK6	HGNC	ENSG00000198055	79	0	0	37	9	19.57	-	-	-	A	176863207	G	A	176863207	2	1	346	1	0	0	0	0	0	0	0	1	6844	1335	47	4		4	GRK6	5	176863207	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	25916930	176863207	4052053	119	37736										
WRNIP1	0	genome.wustl.edu	37	chr6	2770366	2770366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atgattaggacactttccttCctcacgtggaatgtgggacg	11	9	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	2770366	2770366	C	T	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	1	known	missense	c.1027	p.P343S	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	90	0	0	19	13	40.62	-	-	-	T	2770366	C	T	2770366	3	4	346	1	0	0	0	0	1	0	0	0	17500	855	30	2	1037	2	WRNIP1	6	2770366	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		2770366	168344701	120	37737										
F13A1	0	genome.wustl.edu	37	chr6	6318791	6318791	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcaggttgacgccccggggcAccacgccctgaagctccact	12	17	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	6318791	6318791	A	C	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	missense	c.107	p.V36G	0.610	superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	17	0	0	19	24	55.81	-	-	-	C	6318791	A	C	6318791	3	2	346	1	0	0	0	0	1	0	0	0	5377	159	6	5	2147	5	F13A1	6	6318791	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	3548425	6318791	164796276	121	37738										
CAGE1	0	genome.wustl.edu	37	chr6	7373926	7373926	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caatgtctttttagtatcatTcttctctaggattattttgt	5	6	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	7373926	7373926	T	C	SNP	CAGE1	ENST00000338150	human	ensembl	69_37n	-1	known	missense	c.1126	p.N376D	0.983	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304	187	0	0	181	158	46.33	-	-	-	C	7373926	T	C	7373926	3	2	346	1	0	0	0	0	1	0	0	0	2597	1783	62	5	1539	5	CAGE1	6	7373926	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1055135	7373926	163741141	122	37739										
SYCP2L	0	genome.wustl.edu	37	chr6	10910433	10910433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagacttggtgaccaaagaaGgtaagttgtgtctctgagca	12	7	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	10910433	10910433	G	A	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	missense	c.872	p.R291K	1.000	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	47	0	0	107	107	50	-	-	-	A	10910433	G	A	10910433	3	1	346	1	0	0	0	0	1	0	0	0	15525	1014	35	4	914	4	SYCP2L	6	10910433	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3536507	10910433	160204634	123	37740										
HIVEP1	0	genome.wustl.edu	37	chr6	12125573	12125573	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gatgctctaaatttgtcgttAtagaacctataagtgaattg	8	5	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	12125573	12125573	A	G	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.5545	p.I1849V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	76	0	0	51	57	52.78	-	-	-	G	12125573	A	G	12125573	3	3	346	1	0	0	0	0	1	0	0	0	7237	449	16	5	5555	5	HIVEP1	6	12125573	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	1215140	12125573	158989494	124	37741										
HIVEP1	0	genome.wustl.edu	37	chr6	12125792	12125792	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agccagtcacttctctttcaTtgtttaacatcaaggacacc	5	12	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	12125792	12125792	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	silent	c.5764	p.L1922	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	50	0	0	24	20	45.45	-	-	-	C	12125792	T	C	12125792	2	2	346	1	0	0	0	0	0	0	0	1	7237	1490	52	5		5	HIVEP1	6	12125792	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	219	12125792	158989275	125	37742										
NUP153	0	genome.wustl.edu	37	chr6	17675939	17675939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggaaaaattcagatggctccGatgaagagaaggccttgtta	12	6	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	17675939	17675939	G	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.397	p.R133W	1.000	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	47	0	0	58	52	47.27	-	-	-	A	17675939	G	A	17675939	3	1	346	1	0	0	0	0	1	0	0	0	10828	1057	37	1	4110	1	NUP153	6	17675939	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5550147	17675939	153439128	126	37743										
LRRC16A	0	genome.wustl.edu	37	chr6	25516007	25516007	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgaccaaagtggacattagCggcaacggaatgggggacat	14	8	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	25516007	25516007	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	silent	c.1737	p.S579	0.996	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	38	0	0	20	18	47.37	-	-	-	T	25516007	C	T	25516007	2	4	346	1	0	0	0	0	0	0	0	1	9037	767	27	1		1	LRRC16A	6	25516007	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7840068	25516007	145599060	127	37744										
HIST1H1E	0	genome.wustl.edu	37	chr6	26157103	26157103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaagaaggcgaagaagccggCtgcagctgctggagccaaaa	14	9	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	26157103	26157103	C	G	SNP	HIST1H1E	ENST00000304218	human	ensembl	69_37n	1	known	missense	c.485	p.A162G	0.996	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	13	0	0	5	12	70.59	-	-	-	G	26157103	C	G	26157103	3	3	346	1	0	0	0	0	1	0	0	0	7177	797	28	4	487	4	HIST1H1E	6	26157103	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	641096	26157103	144957964	128	37745										
BTN3A2	0	genome.wustl.edu	37	chr6	26368938	26368938	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agcctaaggcaggtggtgaaCgtgtatgcagatggaaagga	16	5	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	26368938	26368938	C	T	SNP	BTN3A2	ENST00000356386	human	ensembl	69_37n	1	known	silent	c.231	p.N77	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A2	HGNC	ENSG00000186470	207	0	0	136	92	40.35	-	-	-	T	26368938	C	T	26368938	2	4	346	1	0	0	0	0	0	0	0	1	1572	535	19	1		1	BTN3A2	6	26368938	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	211835	26368938	144746129	129	37746										
BTN3A2	0	genome.wustl.edu	37	chr6	26369080	26369080	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctctgacagtggaaagtacTtgtgttatttccaagatggt	10	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	26369080	26369080	T	C	SNP	BTN3A2	ENST00000356386	human	ensembl	69_37n	1	known	silent	c.373	p.L125	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A2	HGNC	ENSG00000186470	26	0	0	47	17	26.56	-	-	-	C	26369080	T	C	26369080	2	2	346	1	0	0	0	0	0	0	0	1	1572	1606	56	5		5	BTN3A2	6	26369080	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	142	26369080	144745987	130	37747										
BTN3A1	0	genome.wustl.edu	37	chr6	26406424	26406424	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctctgacagtggaaagtacTtgtgttatttccaagatggt	10	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	26406424	26406424	T	C	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	silent	c.373	p.L125	0.234	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	38	0	0	21	4	16	-	-	-	C	26406424	T	C	26406424	2	2	346	1	0	0	0	0	0	0	0	1	1571	1606	56	5		5	BTN3A1	6	26406424	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	37344	26406424	144708643	131	37748										
OR2B3	0	genome.wustl.edu	37	chr6	29054544	29054544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtggcatgttaagagtcaagGaagactgcagcactgagttg	14	6	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	29054544	29054544	G	A	SNP	OR2B3	ENST00000377173	human	ensembl	69_37n	-1	known	missense	c.482	p.S161F	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703	19	0	0	23	16	41.03	-	-	-	A	29054544	G	A	29054544	3	1	346	1	0	0	0	0	1	0	0	0	11063	1174	41	2	463	2	OR2B3	6	29054544	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2648120	29054544	142060523	132	37749										
HLA-C	0	genome.wustl.edu	37	chr6	31237779	31237779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acacatcatagcggtgaccaCagctccaaggacagctagga	10	12	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	31237779	31237779	C	T	SNP	HLA-C	ENST00000539307	human	ensembl	69_37n	-1	known	missense	c.1090	p.V364M	0.239	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-C	HGNC	ENSG00000204525	25	0	0	13	10	43.48	-	-	-	T	31237779	C	T	31237779	3	4	346	1	0	0	0	0	1	0	0	0	7248	478	17	4	137	4	HLA-C	6	31237779	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2183235	31237779	139877288	133	37750										
CYP21A2	0	genome.wustl.edu	37	chr6	32008451	32008451	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccagcccccttcagcatctcCggctacgacatccctgaggg	9	18	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	32008451	32008451	C	T	SNP	CYP21A2	ENST00000418967	human	ensembl	69_37n	1	known	silent	c.1125	p.S375	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852	27	0	0	16	8	33.33	-	-	-	T	32008451	C	T	32008451	2	4	346	1	0	0	0	0	0	0	0	1	4184	639	23	1		1	CYP21A2	6	32008451	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	770672	32008451	139106616	134	37751										
ATF6B	0	genome.wustl.edu	37	chr6	32085658	32085658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaactgggctggtctgtggGgctgggctggggctccttag	19	8	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	32085658	32085658	G	A	SNP	ATF6B	ENST00000375203	human	ensembl	69_37n	-1	known	missense	c.1402	p.P468S	0.022	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6B	HGNC	ENSG00000213676	51	0	0	14	19	57.58	-	-	-	A	32085658	G	A	32085658	3	1	346	1	0	0	0	0	1	0	0	0	1089	1232	43	4	737	4	ATF6B	6	32085658	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	77207	32085658	139029409	135	37752										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32487420	32487420	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgcaggatacacagtcacctTaggctcaactaggagaaagg	11	9	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	32487420	32487420	T	G	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	missense	c.379	p.K127Q	0.002	pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	49	0	0	1	4	80	-	-	-	G	32487420	T	G	32487420	3	3	346	1	0	0	0	0	1	0	0	0	7260	1763	61	5	437	5	HLA-DRB5	6	32487420	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	401762	32487420	138627647	136	37753										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549464	32549464	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctccattctggatcaggccTgtggacaccatcccagcctt	8	15	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	32549464	32549464	T	C	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	silent	c.522	p.T174	0.983	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	19	0	0	11	5	31.25	-	-	-	C	32549464	T	C	32549464	2	2	346	1	0	0	0	0	0	0	0	1	7259	1567	55	5		5	HLA-DRB1	6	32549464	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	62044	32549464	138565603	137	37754										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32551970	32551970	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcccgcgcctgctccaggaTgtccttctggctgttccagt	12	15	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	32551970	32551970	T	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.286	p.I96F	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	32	0	0	0	3	50	-	-	-	A	32551970	T	A	32551970	3	1	346	1	0	0	0	0	1	0	0	0	7259	1464	51	5	534	5	HLA-DRB1	6	32551970	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2506	32551970	138563097	138	37755										
GLP1R	0	genome.wustl.edu	37	chr6	39024252	39024252	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccagcgctccctgactgaggAtccacctcctgccacaggtg	10	17	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	39024252	39024252	A	T	SNP	GLP1R	ENST00000373256	human	ensembl	69_37n	1	known	missense	c.158	p.D53V	0.011	pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	-	no_errors	GLP1R	HGNC	ENSG00000112164	24	0	0	8	12	60	-	-	-	T	39024252	A	T	39024252	3	4	346	1	0	0	0	0	1	0	0	0	6504	333	12	5	164	5	GLP1R	6	39024252	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	6472282	39024252	132090815	139	37756										
GLP1R	0	genome.wustl.edu	37	chr6	39046130	39046130	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtttgttgtcccctggggcAttgtcaagtacctctatgag	11	9	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	39046130	39046130	A	G	SNP	GLP1R	ENST00000373256	human	ensembl	69_37n	1	known	missense	c.856	p.I286V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	-	no_errors	GLP1R	HGNC	ENSG00000112164	41	0	0	37	45	54.88	-	-	-	G	39046130	A	G	39046130	3	3	346	1	0	0	0	0	1	0	0	0	6504	217	8	5	886	5	GLP1R	6	39046130	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	21878	39046130	132068937	140	37757										
KCNK17	0	genome.wustl.edu	37	chr6	39278695	39278697	+	In_Frame_Del	DEL	AAG	AAG	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggtgatggtggacacagaaAagaagaaggagcccacgagc							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	39278695	39278697	AAG	-	DEL	KCNK17	ENST00000373231	human	ensembl	69_37n	-1	known	in_frame_del	c.326_324	p.F109in_frame_del	1.000:1.000:1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780	20	0	0	11	12	50	-	-	-	-	39278697	AAG	-	39278695	7	5	346	1	0	1	0	1	0	0	0	0	8118	14	1	0	820	0	KCNK17	6	39278695	In_Frame_Del	DEL	AAG	TCGA-AO-A12E-01A-11D-A10M-09	232565	39278695	131836372	141	37758										
KIF6	0	genome.wustl.edu	37	chr6	39512313	39512313	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggatagaggaagtttcttcaTcacttcagaaaggatactga	10	6	4	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	39512313	39512313	T	A	SNP	KIF6	ENST00000538893	human	ensembl	69_37n	-1	known	missense	c.1444	p.M482L	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	136	0	0	182	170	48.3	-	-	-	A	39512313	T	A	39512313	3	1	346	1	0	0	0	0	1	0	0	0	8360	1450	50	5		5	KIF6	6	39512313	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	233618	39512313	131602754	142	37759										
PGC	0	genome.wustl.edu	37	chr6	41708938	41708938	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccagaggcttctctggtagCtggagtgtggagctgggtgg	18	7	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	41708938	41708938	C	G	SNP	PGC	ENST00000425343	human	ensembl	69_37n	-1	known	missense	c.723	p.Q241H	0.000	NULL	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic	-	no_errors	PGC	HGNC	ENSG00000096088	210	0	0	0	123	100	-	-	-	G	41708938	C	G	41708938	3	3	346	1	0	0	0	0	1	0	0	0	11859	796	28	4	764	4	PGC	6	41708938	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2196625	41708938	129406129	143	37760										
TAF8	0	genome.wustl.edu	37	chr6	42044897	42044897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagcagaacccctccttgtcGggtagccggaatggggagga	15	11	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	42044897	42044897	G	A	SNP	TAF8	ENST00000372982	human	ensembl	69_37n	1	known	missense	c.962	p.R321Q	0.001	NULL	pfam_BTP,pfam_TFIID_su8_C,superfamily_Histone-fold,smart_BTP	-	no_errors	TAF8	HGNC	ENSG00000137413	53	0	0	41	41	49.4	-	-	-	A	42044897	G	A	42044897	3	1	346	1	0	0	0	0	1	0	0	0	15626	1103	39	1	870	1	TAF8	6	42044897	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	335959	42044897	129070170	144	37761										
PEX6	0	genome.wustl.edu	37	chr6	42936109	42936109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacccagcccatcacggtccCggcccagaaggtccacagct	9	19	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	42936109	42936109	C	T	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.1607	p.R536Q	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	19	0	0	8	10	55.56	-	-	-	T	42936109	C	T	42936109	3	4	346	1	0	0	0	0	1	0	0	0	11824	652	23	1	1379	1	PEX6	6	42936109	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	891212	42936109	128178958	145	37762										
LGSN	0	genome.wustl.edu	37	chr6	63990201	63990201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agcaacagttgcagccagcaCcaagtaagggtttgctgttg	12	9	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	63990201	63990201	C	T	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	missense	c.1255	p.V419M	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	49	0	0	60	44	42.31	-	-	-	T	63990201	C	T	63990201	3	4	346	1	0	0	0	0	1	0	0	0	8814	507	18	4	278	4	LGSN	6	63990201	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	21054092	63990201	107124866	146	37763										
MANEA	0	genome.wustl.edu	37	chr6	96052716	96052716	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gttttaggttacttttcacaTagaaccatatagcaatcgag	7	7	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	96052716	96052716	T	G	SNP	MANEA	ENST00000358812	human	ensembl	69_37n	1	known	missense	c.668	p.I223R	1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469	40	0	0	119	115	49.15	-	-	-	G	96052716	T	G	96052716	3	3	346	1	0	0	0	0	1	0	0	0	9292	1406	49	5	678	5	MANEA	6	96052716	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	32062515	96052716	75062351	147	37764										
ASCC3	0	genome.wustl.edu	37	chr6	101215022	101215022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtctgatttatttacttaccTtaaattcattctttttgata	3	6	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	101215022	101215022	T	C	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.1595	p.K532R	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_AAA+_ATPase,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	88	0	0	147	133	47.5	-	-	-	C	101215022	T	C	101215022	3	2	346	1	0	0	0	0	1	0	0	0	1037	1623	56	5	5149	5	ASCC3	6	101215022	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	5162306	101215022	69900045	148	37765										
PREP	0	genome.wustl.edu	37	chr6	105726244	105726244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cggtcatcatggtcagcagtGaggagcagcatggacgggta	16	8	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	105726244	105726244	G	A	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	silent	c.1908	p.L636	0.995	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	33	0	0	31	34	52.31	-	-	-	A	105726244	G	A	105726244	2	1	346	1	0	0	0	0	0	0	0	1	12555	1277	45	2		2	PREP	6	105726244	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4511222	105726244	65388823	149	37766										
CTAGE9	0	genome.wustl.edu	37	chr6	132030560	132030560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaggagagggaaaagctctcGtttcagatgaaggccgaccc	14	9	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	132030560	132030560	G	A	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	missense	c.1598	p.T533M	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	33	0	0	46	46	50	-	-	-	A	132030560	G	A	132030560	3	1	346	1	0	0	0	0	1	0	0	0	4028	1145	40	1	739	1	CTAGE9	6	132030560	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	26304316	132030560	39084507	150	37767										
CTAGE9	0	genome.wustl.edu	37	chr6	132030966	132030966	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cactgttaatttcctgtagaGtttcatttcattttcttgat	5	7	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	132030966	132030966	G	C	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	missense	c.1192	p.L398V	0.969	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	56	0	0	176	138	43.95	-	-	-	C	132030966	G	C	132030966	3	2	346	1	0	0	0	0	1	0	0	0	4028	1029	36	4	1145	4	CTAGE9	6	132030966	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	406	132030966	39084101	151	37768										
SYNE1	0	genome.wustl.edu	37	chr6	152551687	152551687	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acctggacaagttacctgacAgtctttcagtgcattttgaa	8	9	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	152551687	152551687	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.21190	p.C7064S	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	42	0	0	137	64	31.84	-	-	-	T	152551687	A	T	152551687	3	4	346	1	0	0	0	0	1	0	0	0	15537	188	7	5	5404	5	SYNE1	6	152551687	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	20520721	152551687	18563380	152	37769										
SYNE1	0	genome.wustl.edu	37	chr6	152779917	152779917	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtttttgtttaaaaagggcaCtcgattgtgcctcacgctca	9	9	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	152779917	152779917	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.2543	p.S848T	0.744	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	50	0	0	79	72	47.68	-	-	-	G	152779917	C	G	152779917	3	3	346	1	0	0	0	0	1	0	0	0	15537	565	20	4	24423	4	SYNE1	6	152779917	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	228230	152779917	18335150	153	37770										
TULP4	0	genome.wustl.edu	37	chr6	158924696	158924696	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccagcggacagaaaaatttgGaaagaagaaccggaagcgcc	12	9	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	158924696	158924696	G	C	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.4001	p.G1334A	0.236	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	32	0	0	20	11	35.48	-	-	-	C	158924696	G	C	158924696	3	2	346	1	0	0	0	0	1	0	0	0	16873	1174	41	2	4051	2	TULP4	6	158924696	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6144779	158924696	12190371	154	37771										
MAP3K4	0	genome.wustl.edu	37	chr6	161533713	161533713	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tttaaagcatacatggcaccTgaagtcatcactcgtgccaa	7	11	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	161533713	161533713	T	C	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	silent	c.4533	p.P1511	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	29	0	0	39	35	47.3	-	-	-	C	161533713	T	C	161533713	2	2	346	1	0	0	0	0	0	0	0	1	9323	1567	55	5		5	MAP3K4	6	161533713	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2609017	161533713	9581354	155	37772										
TCP10L2	0	genome.wustl.edu	37	chr6	167591954	167591954	+	Missense_Mutation	SNP	G	G	A													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaaagtcctcccgggagacGtcaagacagaagtccagcac							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	167591954	167591954	G	A	SNP	TCP10L2	ENST00000283507	human	ensembl	69_37n	1	known	missense	c.581	p.R194H	0.007	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984	119	0	0	294	88	23.04	-	-	-	A	167591954	G	A	167591954	3	1	346	1	0	0	0	0	1	0	0	0	15807	1145	40	1	595	1	TCP10L2	6	167591954	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6058241	167591954	3523113	156	37773	309	2								
TCP10L2	0	genome.wustl.edu	37	chr6	167591956	167591956	+	Nonsense_Mutation	SNP	C	C	T													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaagtcctcccgggagacgtCaagacagaagtccagcaccc							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	167591956	167591956	C	T	SNP	TCP10L2	ENST00000283507	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	0.005	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984	121	0	0	297	86	22.45	-	-	-	T	167591956	C	T	167591956	4	4	346	1	0	0	0	0	0	1	0	0	15807	827	29	2	597	2	TCP10L2	6	167591956	Nonsense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2	167591956	3523111	157	37774	309	2								
TCP10L2	0	genome.wustl.edu	37	chr6	167594216	167594216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cttccccagacagtgcagagCggcaggtaggtggctgagtg	16	10	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	167594216	167594216	C	T	SNP	TCP10L2	ENST00000283507	human	ensembl	69_37n	1	known	missense	c.865	p.R289W	0.000	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984	17	0	0	39	12	23.08	-	-	-	T	167594216	C	T	167594216	3	4	346	1	0	0	0	0	1	0	0	0	15807	759	27	1	887	1	TCP10L2	6	167594216	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2260	167594216	3520851	158	37775										
TCP10	0	genome.wustl.edu	37	chr6	167789493	167789493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgtctgctcctgcagcgtggTggcctgggaagcctgcactg	15	13	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	167789493	167789493	T	C	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.649	p.T217A	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	30	0	0	23	17	42.5	-	-	-	C	167789493	T	C	167789493	3	2	346	1	0	0	0	0	1	0	0	0	15805	1696	59	5	343	5	TCP10	6	167789493	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	195277	167789493	3325574	159	37776										
TCP10	0	genome.wustl.edu	37	chr6	167790110	167790110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgctggacttctgtcttgaCgtctcccgggaggacttttc	12	11	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	167790110	167790110	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.001	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	42	0	0	2	2	50	-	-	-	T	167790110	C	T	167790110	3	4	346	1	0	0	0	0	1	0	0	0	15805	536	19	1	496	1	TCP10	6	167790110	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	617	167790110	3324957	160	37777										
FAM120B	0	genome.wustl.edu	37	chr6	170626570	170626570	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaactggcagagcaccaccGaagcaagtatcctggatgta	11	10	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	6	170626570	170626570	G	A	SNP	FAM120B	ENST00000537664	human	ensembl	69_37n	1	known	missense	c.161	p.R54Q	0.203	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584	173	0	0	81	77	48.73	-	-	-	A	170626570	G	A	170626570	3	1	346	1	0	0	0	0	1	0	0	0	5457	1058	37	1	94	1	FAM120B	6	170626570	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2836460	170626570	488497	161	37778										
GET4	0	genome.wustl.edu	37	chr7	923855	923855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cggtgcatgcggttctgcccGtggccccactggcggcatcg	15	15	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	923855	923855	G	A	SNP	GET4	ENST00000441491	human	ensembl	69_37n	1	putative	silent	c.15	p.P5	0.000	NULL	pfam_UPF0363	-	no_stop_codon:bad_bp_length_for_coding_region	GET4	HGNC	ENSG00000239857	13	0	0	1	8	88.89	-	-	-	A	923855	G	A	923855	2	1	346	1	0	0	0	0	0	0	0	1	6388	1160	40	1		1	GET4	7	923855	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		923855	158214808	162	37779										
GLI3	0	genome.wustl.edu	37	chr7	42064932	42064932	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttggacctcttgttgtgcatCgggtcaccagtgctgctcac	11	12	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	42064932	42064932	C	T	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	silent	c.1287	p.P429	0.008	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	35	0	0	51	60	54.05	-	-	-	T	42064932	C	T	42064932	2	4	346	1	0	0	0	0	0	0	0	1	6491	871	31	1		1	GLI3	7	42064932	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	41141077	42064932	117073731	163	37780										
MYO1G	0	genome.wustl.edu	37	chr7	45006283	45006283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gccagtacctgagcaggaatCgagagtagggctggcgggaa	17	8	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	45006283	45006283	C	T	SNP	MYO1G	ENST00000258787	human	ensembl	69_37n	-1	known	missense	c.1937	p.R646Q	0.996	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286	10	0	0	12	6	33.33	-	-	-	T	45006283	C	T	45006283	3	4	346	1	0	0	0	0	1	0	0	0	10146	884	31	1	1151	1	MYO1G	7	45006283	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2941351	45006283	114132380	164	37781										
ABCA13	0	genome.wustl.edu	37	chr7	48311833	48311833	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggaaaacttctttacactttTaaatttttctgttccagaaa	4	7	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	48311833	48311833	T	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	nonsense	c.2570	p.L857*	0.384	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	13	0	0	28	56	66.67	-	-	-	A	48311833	T	A	48311833	4	1	346	1	0	0	0	0	0	1	0	0	31	1764	61	5	2465	5	ABCA13	7	48311833	Nonsense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3305550	48311833	110826830	165	37782										
GTF2I	0	genome.wustl.edu	37	chr7	74159167	74159167	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaatcaaacccggagttcttGtatgtggaaggcttgccaga	12	8	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	74159167	74159167	G	C	SNP	GTF2I	ENST00000324896	human	ensembl	69_37n	1	known	missense	c.1821	p.L607F	0.729	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809	13	0	0	111	42	27.45	-	-	-	C	74159167	G	C	74159167	3	2	346	1	0	0	0	0	1	0	0	0	6918	1368	48	4	1899	4	GTF2I	7	74159167	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	25847334	74159167	84979496	166	37783										
PTPN12	0	genome.wustl.edu	37	chr7	77256043	77256043	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgccttgttgaaggggatgcTaaagaagaaatactgcagcc	12	7	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	77256043	77256043	T	G	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	silent	c.1047	p.A349	0.985	pirsf_Tyr_Pase_non-rcpt_typ-12	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	85	0	0	49	58	54.21	-	-	-	G	77256043	T	G	77256043	2	3	346	1	0	0	0	0	0	0	0	1	12862	1509	53	5		5	PTPN12	7	77256043	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3096876	77256043	81882620	167	37784										
KIAA1324L	0	genome.wustl.edu	37	chr7	86521169	86521169	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agttcacactcttttgagttAgtcgtcattactaacttgga	7	8	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	86521169	86521169	A	G	SNP	KIAA1324L	ENST00000423294	human	ensembl	69_37n	-1	novel	nonstop	c.2782	p.*928Q	0.273	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1324L	HGNC	ENSG00000164659	48	0	0	136	92	40.35	-	-	-	G	86521169	A	G	86521169	4	3	346	1	0	0	0	0	0	0	0	0	8276	407	15	5	196	5	KIAA1324L	7	86521169	Nonstop_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	9265126	86521169	72617494	168	37785										
ABCB1	0	genome.wustl.edu	37	chr7	87178679	87178679	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgaccttatccagagccacCtgaaccactgcttcgctttc	6	16	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	87178679	87178679	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.1710	p.Q570	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	100	0	0	57	40	41.24	-	-	-	T	87178679	C	T	87178679	2	4	346	1	0	0	0	0	0	0	0	1	40	680	24	4		4	ABCB1	7	87178679	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	657510	87178679	71959984	169	37786										
STAG3	0	genome.wustl.edu	37	chr7	99795215	99795215	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccttctcatcatgagtactgCtgtgatccttttgtttttta	6	9	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	99795215	99795215	C	G	SNP	STAG3	ENST00000440830	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.096	-	-	-	no_errors	STAG3	HGNC	ENSG00000066923	58	0	0	10	8	44.44	-	-	-	G	99795215	C	G	99795215	1	3	346	0	1	0	0	0	0	0	0	0	15335	812	28	4		4	STAG3	7	99795215	RNA	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12616536	99795215	59343448	170	37787										
TRIM56	0	genome.wustl.edu	37	chr7	100732537	100732537	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	accagcccccaggggcatttCgtggggtcggactggcagca	15	13	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	100732537	100732537	C	T	SNP	TRIM56	ENST00000306085	human	ensembl	69_37n	1	known	silent	c.1944	p.F648	0.018	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871	175	0	0	31	39	55.71	-	-	-	T	100732537	C	T	100732537	2	4	346	1	0	0	0	0	0	0	0	1	16626	883	31	1		1	TRIM56	7	100732537	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	937322	100732537	58406126	171	37788										
POLR2J3	0	genome.wustl.edu	37	chr7	102180473	102180473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcccctaccttgctgcaggCgagtgtcgctggaccacttt	12	14	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	102180473	102180473	C	T	SNP	POLR2J3	ENST00000379357	human	ensembl	69_37n	-1	known	missense	c.551	p.R184H	0.000	NULL	NULL	-	no_errors	POLR2J3	HGNC	ENSG00000168255	24	0	0	12	10	45.45	-	-	-	T	102180473	C	T	102180473	3	4	346	1	0	0	0	0	1	0	0	0	12299	783	27	1		1	POLR2J3	7	102180473	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1447936	102180473	56958190	172	37789										
SYPL1	0	genome.wustl.edu	37	chr7	105733552	105733553	+	Frame_Shift_Del	DEL	AA	AA	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgaagtgctcaccaaccacAaaaaagtggcaacaagtgta							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	105733552	105733553	AA	-	DEL	SYPL1	ENST00000011473	human	ensembl	69_37n	-1	known	frame_shift_del	c.488_487	p.L163fs	1.000:1.000	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYPL1	HGNC	ENSG00000008282	46	0	0	79	22	21.78	-	-	-	-	105733553	AA	-	105733552	7	5	346	1	0	1	0	1	0	0	0	0	15554	131	5	0	299	0	SYPL1	7	105733552	Frame_Shift_Del	DEL	AA	TCGA-AO-A12E-01A-11D-A10M-09	3553079	105733552	53405111	173	37790										
CAV1	0	genome.wustl.edu	37	chr7	116165233	116165233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccaaatatcccgactgctgcCctggccccagccctctctcc	6	21	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	116165233	116165233	C	T	SNP	CAV1	ENST00000451122	human	ensembl	69_37n	1	known	silent	c.117	p.A39	0.003	NULL	NULL	-	no_errors	CAV1	HGNC	ENSG00000105974	36	0	0	7	4	33.33	-	-	-	T	116165233	C	T	116165233	2	4	346	1	0	0	0	0	0	0	0	1	2718	638	22	4		4	CAV1	7	116165233	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	10431681	116165233	42973430	174	37791										
KCND2	0	genome.wustl.edu	37	chr7	120386054	120386054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagcacgattcagatcagatGtgtggagagaacacctctgt	11	9	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	120386054	120386054	G	A	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.1688	p.C563Y	1.000	prints_K_chnl_volt-dep_Kv4.2	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	8	0	0	33	32	48.48	-	-	-	A	120386054	G	A	120386054	3	1	346	1	0	0	0	0	1	0	0	0	8073	1377	48	4	1706	4	KCND2	7	120386054	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4220821	120386054	38752609	175	37792										
LRRC4	0	genome.wustl.edu	37	chr7	127669484	127669484	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gttcaaggtgccgtcgttgaGgacagagatccttgggtggc	16	8	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	127669484	127669484	G	C	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	missense	c.1210	p.L404V	0.998	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	134	0	0	27	38	58.46	-	-	-	C	127669484	G	C	127669484	3	2	346	1	0	0	0	0	1	0	0	0	9063	1000	35	4	755	4	LRRC4	7	127669484	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7283430	127669484	31469179	176	37793										
METTL2B	0	genome.wustl.edu	37	chr7	128119514	128119514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctcagaaaattagtgacctgGaaatttgtgctgatgagttt	10	5	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	128119514	128119514	G	A	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	missense	c.505	p.E169K	0.159	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	136	0	0	251	135	34.97	-	-	-	A	128119514	G	A	128119514	3	1	346	1	0	0	0	0	1	0	0	0	9571	1175	41	2	515	2	METTL2B	7	128119514	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	450030	128119514	31019149	177	37794										
KIAA1549	0	genome.wustl.edu	37	chr7	138602974	138602974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcagagaagtctgctacgacGctactcattagagagatgct	10	9	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	138602974	138602974	G	T	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.1398	p.S466R	0.020	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	24	0	0	10	20	66.67	-	-	-	T	138602974	G	T	138602974	3	4	346	1	0	0	0	0	1	0	0	0	8296	1078	38	3	4530	3	KIAA1549	7	138602974	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	10483460	138602974	20535689	178	37795										
MGAM	0	genome.wustl.edu	37	chr7	141776541	141776541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgagattaaaattcttgggaTggaggaacctagcaatgtta	11	4	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	141776541	141776541	T	C	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.5411	p.M1804T	0.002	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	15	0	0	41	91	68.94	-	-	-	C	141776541	T	C	141776541	3	2	346	1	0	0	0	0	1	0	0	0	9612	1479	51	5		5	MGAM	7	141776541	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3173567	141776541	17362122	179	37796										
MGAM	0	genome.wustl.edu	37	chr7	141784326	141784326	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtctattttctagttgattgGccggcctgtgatggtacctt	11	8	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	141784326	141784326	G	C	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.6392	p.G2131A	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	66	0	0	0	178	99.44	-	-	-	C	141784326	G	C	141784326	3	2	346	1	0	0	0	0	1	0	0	0	9612	1218	42	4		4	MGAM	7	141784326	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7785	141784326	17354337	180	37797										
MGAM	0	genome.wustl.edu	37	chr7	141785648	141785648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgcaggacgtgcagtactcaGacatcgactacatggagcgg	13	11	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	141785648	141785648	G	C	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.6526	p.D2176H	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	17	0	0	31	17	35.42	-	-	-	C	141785648	G	C	141785648	3	2	346	1	0	0	0	0	1	0	0	0	9612	957	33	2		2	MGAM	7	141785648	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1322	141785648	17353015	181	37798										
FAM115C	0	genome.wustl.edu	37	chr7	143400301	143400301	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atgagggctacctgtcgcatActggcttggctccatttctc	10	12	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	143400301	143400301	A	G	SNP	FAM115C	ENST00000441159	human	ensembl	69_37n	1	known	missense	c.214	p.T72A	0.000	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379	21	0	0	0	3	100	-	-	-	G	143400301	A	G	143400301	3	3	346	1	0	0	0	0	1	0	0	0	5446	391	14	5	216	5	FAM115C	7	143400301	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	1614653	143400301	15738362	182	37799										
OR2A42	0	genome.wustl.edu	37	chr7	143929772	143929772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggaagaagtacatgggggtGtggagtctggagtccagtga	18	4	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	143929772	143929772	G	A	SNP	OR2A42	ENST00000391496	human	ensembl	69_37n	-1	known	silent	c.165	p.H55	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A42	HGNC	ENSG00000212807	10	0	0	0	20	100	-	-	-	A	143929772	G	A	143929772	2	1	346	1	0	0	0	0	0	0	0	1	11053	1368	48	4		4	OR2A42	7	143929772	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	529471	143929772	15208891	183	37800										
ARHGEF5	0	genome.wustl.edu	37	chr7	144060286	144060286	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaagaggaaacctcttcagAtaactctggtcagaccagat	9	9	4	5			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	144060286	144060286	A	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.524	p.D175G	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	123	1	0.81	0	54	100	-	-	-	G	144060286	A	G	144060286	3	3	346	1	0	0	0	0	1	0	0	0	911	333	12	5	526	5	ARHGEF5	7	144060286	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	130514	144060286	15078377	184	37801										
ARHGEF5	0	genome.wustl.edu	37	chr7	144060668	144060668	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagccagagggtctgaatgaCggtgagtgggagcaggagga	20	5	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	7	144060668	144060668	C	T	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	silent	c.906	p.D302	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	155	0	0	3	7	70	-	-	-	T	144060668	C	T	144060668	2	4	346	1	0	0	0	0	0	0	0	1	911	535	19	1		1	ARHGEF5	7	144060668	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	382	144060668	15077995	185	37802										
FBXO25	0	genome.wustl.edu	37	chr8	385683	385683	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcaagtgcaattcaagatatCcgaaggttcaattatgtggt	9	6	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	385683	385683	C	A	SNP	FBXO25	ENST00000276326	human	ensembl	69_37n	1	known	silent	c.357	p.I119	0.989	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO25	HGNC	ENSG00000147364	14	0	0	63	61	49.19	-	-	-	A	385683	C	A	385683	2	1	346	1	0	0	0	0	0	0	0	1	5782	845	30	2		2	FBXO25	8	385683	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		385683	145978339	186	37803										
MCPH1	0	genome.wustl.edu	37	chr8	6302476	6302476	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cttagctgtggggagtcttcAtatgatgactatttttcacc	9	8	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	6302476	6302476	A	G	SNP	MCPH1	ENST00000344683	human	ensembl	69_37n	1	known	silent	c.1233	p.S411	0.000	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	MCPH1	HGNC	ENSG00000147316	11	0	0	18	20	52.63	-	-	-	G	6302476	A	G	6302476	2	3	346	1	0	0	0	0	0	0	0	1	9469	204	8	5		5	MCPH1	8	6302476	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	5916793	6302476	140061546	187	37804										
SPAG11B	0	genome.wustl.edu	37	chr8	7320265	7320265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcgcggtggtaagaggtcccGtttcactgcgtggcgtagca	16	10	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	7320265	7320265	G	A	SNP	SPAG11B	ENST00000398462	human	ensembl	69_37n	-1	known	missense	c.178	p.R60W	0.000	pfam_Sperm_Ag_HE2	pfam_Sperm_Ag_HE2,pfam_Defensin_beta-typ	-	no_errors	SPAG11B	HGNC	ENSG00000164871	17	0	0	49	22	30.99	-	-	-	A	7320265	G	A	7320265	3	1	346	1	0	0	0	0	1	0	0	0	15068	1144	40	1	541	1	SPAG11B	8	7320265	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1017789	7320265	139043757	188	37805										
CPA6	0	genome.wustl.edu	37	chr8	68346441	68346441	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctggaaaagggccacagtaTgtgtcatcacaagggtgcat	12	8	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	68346441	68346441	T	C	SNP	CPA6	ENST00000297770	human	ensembl	69_37n	-1	known	silent	c.873	p.T291	0.010	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078	59	0	0	116	28	19.44	-	-	-	C	68346441	T	C	68346441	2	2	346	1	0	0	0	0	0	0	0	1	3824	1451	51	5		5	CPA6	8	68346441	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	61026176	68346441	78017581	189	37806										
CRISPLD1	0	genome.wustl.edu	37	chr8	75925200	75925200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agctacccatatgaacatgaAtgcaacccatattgtccatt	5	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	75925200	75925200	A	G	SNP	CRISPLD1	ENST00000517786	human	ensembl	69_37n	1	putative	missense	c.11	p.N4S	1.000	NULL	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	35	0	0	79	140	63.93	-	-	-	G	75925200	A	G	75925200	3	3	346	1	0	0	0	0	1	0	0	0	3912	98	4	5	463	5	CRISPLD1	8	75925200	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	7578759	75925200	70438822	190	37807										
INTS8	0	genome.wustl.edu	37	chr8	95869095	95869095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtcaggtcatgctgaatgagAtgttgcttttggatattcat	11	5	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	95869095	95869095	A	G	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	missense	c.1843	p.M615V	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	78	0	0	148	38	20.43	-	-	-	G	95869095	A	G	95869095	3	3	346	1	0	0	0	0	1	0	0	0	7838	333	12	5	1901	5	INTS8	8	95869095	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	19943895	95869095	50494927	191	37808										
RGS22	0	genome.wustl.edu	37	chr8	101020624	101020624	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tttttataagcaatttggtcCgattttaccatctttgtcca	5	8	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	101020624	101020624	C	T	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	silent	c.2340	p.S780	0.992	superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	175	0	0	223	49	18.01	-	-	-	T	101020624	C	T	101020624	2	4	346	1	0	0	0	0	0	0	0	1	13389	639	23	1		1	RGS22	8	101020624	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	5151529	101020624	45343398	192	37809										
POU5F1B	0	genome.wustl.edu	37	chr8	128428656	128428656	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgggaaggtgttcagccaaaAgaccatctgccgctttgagg	13	9	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	128428656	128428656	A	C	SNP	POU5F1B	ENST00000391675	human	ensembl	69_37n	1	known	missense	c.545	p.K182T	0.999	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,prints_POU,pfscan_POU_specific	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU5F1B	HGNC	ENSG00000212993	33	0	0	103	44	29.93	-	-	-	C	128428656	A	C	128428656	3	2	346	1	0	0	0	0	1	0	0	0	12355	72	3	5	547	5	POU5F1B	8	128428656	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	27408032	128428656	17935366	193	37810										
PLEC	0	genome.wustl.edu	37	chr8	145024476	145024476	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tagacccgctgctcctccgtCggcagcggcccccgcttggg	13	18	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	145024476	145024476	C	T	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.399	p.P133	0.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	23	0	0	9	5	35.71	-	-	-	T	145024476	C	T	145024476	2	4	346	1	0	0	0	0	0	0	0	1	12126	871	31	1		1	PLEC	8	145024476	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	16595820	145024476	1339546	194	37811										
MAF1	0	genome.wustl.edu	37	chr8	145160613	145160613	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctattggagaactcgagcttTgaagccatcaactcacagct	8	11	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	8	145160613	145160613	T	C	SNP	MAF1	ENST00000322428	human	ensembl	69_37n	1	known	silent	c.27	p.F9	0.954	pirsf_RNA_pol_III_tscrpt_repres_MAF1	pfam_Maf1,pirsf_RNA_pol_III_tscrpt_repres_MAF1	-	no_errors	MAF1	HGNC	ENSG00000179632	53	0	0	18	9	33.33	-	-	-	C	145160613	T	C	145160613	2	2	346	1	0	0	0	0	0	0	0	1	9223	1809	63	5		5	MAF1	8	145160613	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	136137	145160613	1203409	195	37812										
BNC2	0	genome.wustl.edu	37	chr9	16436122	16436122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtcctgttatgcttagaaaaGtccttcacagacatgcctgg	9	10	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	16436122	16436122	G	A	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	silent	c.2070	p.D690	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	96	0	0	40	36	47.37	-	-	-	A	16436122	G	A	16436122	2	1	346	1	0	0	0	0	0	0	0	1	1480	1020	36	4		4	BNC2	9	16436122	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		16436122	124777309	196	37813										
IFNA4	0	genome.wustl.edu	37	chr9	21187311	21187311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaggacagagatggcttgagCcttctggaactggtggccat	15	8	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	21187311	21187311	C	T	SNP	IFNA4	ENST00000421715	human	ensembl	69_37n	-1	known	missense	c.220	p.A74T	0.072	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA4	HGNC	ENSG00000236637	91	0	0	0	125	100	-	-	-	T	21187311	C	T	21187311	3	4	346	1	0	0	0	0	1	0	0	0	7593	739	26	4	353	4	IFNA4	9	21187311	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4751189	21187311	120026120	197	37814										
AQP3	0	genome.wustl.edu	37	chr9	33442871	33442871	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggtcaaagaagccattgatCatatccaagtgtccagaggg	11	8	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	33442871	33442871	C	A	SNP	AQP3	ENST00000297991	human	ensembl	69_37n	-1	known	missense	c.471	p.M157I	0.988	pfam_MIP,superfamily_Aquaporin-like,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_3,prints_MIP,tigrfam_Aquaporin	-	no_errors	AQP3	HGNC	ENSG00000165272	82	0	0	31	35	53.03	-	-	-	A	33442871	C	A	33442871	3	1	346	1	0	0	0	0	1	0	0	0	829	826	29	2	419	2	AQP3	9	33442871	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12255560	33442871	107770560	198	37815										
PRSS3	0	genome.wustl.edu	37	chr9	33796691	33796693	+	In_Frame_Del	DEL	GAG	GAG	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttgttgggggctacacctgtGaggagaattctctcccctac							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	33796691	33796693	GAG	-	DEL	PRSS3	ENST00000361005	human	ensembl	69_37n	1	known	in_frame_del	c.262_264	p.E89in_frame_del	0.023:0.017:0.021	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438	167	0	0	92	71	43.56	-	-	-	-	33796693	GAG	-	33796691	7	5	346	1	0	1	0	1	0	0	0	0	12702	1291	45	0	312	0	PRSS3	9	33796691	In_Frame_Del	DEL	GAG	TCGA-AO-A12E-01A-11D-A10M-09	353820	33796691	107416740	199	37816										
UBAP2	0	genome.wustl.edu	37	chr9	33935736	33935736	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agggctgctttttaacgaatAagccattgaccaactggtgt	10	8	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	33935736	33935736	A	G	SNP	UBAP2	ENST00000379225	human	ensembl	69_37n	-1	known	silent	c.969	p.L323	0.000	NULL	pfam_DUF3697_Uba2	-	no_errors	UBAP2	HGNC	ENSG00000137073	19	0	0	16	21	56.76	-	-	-	G	33935736	A	G	33935736	2	3	346	1	0	0	0	0	0	0	0	1	16934	377	13	5		5	UBAP2	9	33935736	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	139045	33935736	107277695	200	37817										
VCP	0	genome.wustl.edu	37	chr9	35061169	35061169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccacatgcccgtgagtctcaTtggctacctgcagagaaaga	10	12	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	35061169	35061169	T	C	SNP	VCP	ENST00000358901	human	ensembl	69_37n	-1	known	missense	c.1202	p.N401S	1.000	tigrfam_ATPase_AAA_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	30	0	0	10	8	44.44	-	-	-	C	35061169	T	C	35061169	3	2	346	1	0	0	0	0	1	0	0	0	17237	1493	52	5	1246	5	VCP	9	35061169	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1125433	35061169	106152262	201	37818										
TPM2	0	genome.wustl.edu	37	chr9	35684813	35684813	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccccacatttactgcagggGgtgtgtggcggggggggcag	19	9	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	35684813	35684813	G	A	SNP	TPM2	ENST00000471212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	TPM2	HGNC	ENSG00000198467	24	0	0	15	14	48.28	-	-	-	A	35684813	G	A	35684813	1	1	346	0	1	0	0	0	0	0	0	0	16502	1247	43	4		4	TPM2	9	35684813	RNA	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	623644	35684813	105528618	202	37819										
SLC28A3	0	genome.wustl.edu	37	chr9	86912178	86912178	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttgtatttctcaccaaagacAaatgaagcaccagcatctgt	6	10	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	86912178	86912178	A	T	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.819	p.F273L	1.000	pfam_Nuclsd_transpt2,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	34	0	0	57	68	54.4	-	-	-	T	86912178	A	T	86912178	3	4	346	1	0	0	0	0	1	0	0	0	14622	127	5	5	1300	5	SLC28A3	9	86912178	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	51227365	86912178	54301253	203	37820										
CTSL1	0	genome.wustl.edu	37	chr9	90343780	90343780	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttttggaaggtggacactttAagagataacagatacctttt	9	5	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	90343780	90343780	A	C	SNP	CTSL1	ENST00000342020	human	ensembl	69_37n	1	known	nonstop	c.677	p.*226S	0.000	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C	-	no_errors	CTSL1	HGNC	ENSG00000135047	79	0	0	0	49	100	-	-	-	C	90343780	A	C	90343780	4	2	346	1	0	0	0	0	0	0	0	0	4070	377	13	5		5	CTSL1	9	90343780	Nonstop_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	3431602	90343780	50869651	204	37821										
C9orf129	0	genome.wustl.edu	37	chr9	96097673	96097673	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cactttgtcgcccctccgctGccctcgtcgttgtcggaaga	10	16	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	96097673	96097673	G	A	SNP	C9orf129	ENST00000375419	human	ensembl	69_37n	-1	known	silent	c.348	p.G116	1.000	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352	20	0	0	23	18	43.9	-	-	-	A	96097673	G	A	96097673	2	1	346	1	0	0	0	0	0	0	0	1	2481	1306	46	4		4	C9orf129	9	96097673	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5753893	96097673	45115758	205	37822										
HIATL1	0	genome.wustl.edu	37	chr9	97203308	97203308	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtgtctggagtcttctcggTcacgttttctgttatatttg	10	7	5	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	97203308	97203308	T	G	SNP	HIATL1	ENST00000375344	human	ensembl	69_37n	1	known	missense	c.437	p.V146G	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIATL1	HGNC	ENSG00000148110	110	0	0	171	50	22.52	-	-	-	G	97203308	T	G	97203308	3	3	346	1	0	0	0	0	1	0	0	0	7149	1667	58	5	455	5	HIATL1	9	97203308	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1105635	97203308	44010123	206	37823										
FAM22G	0	genome.wustl.edu	37	chr9	99700710	99700710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagggcagcccctcgacatgGcacggccaggttggactcaa	14	13	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	99700710	99700710	G	A	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	missense	c.1505	p.G502D	0.000	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	10	0	0	8	9	52.94	-	-	-	A	99700710	G	A	99700710	3	1	346	1	0	0	0	0	1	0	0	0	5588	1203	42	4	1531	4	FAM22G	9	99700710	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2497402	99700710	41512721	207	37824										
GRIN3A	0	genome.wustl.edu	37	chr9	104499565	104499565	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcaccaggctcctctcacctGactctcccgtggaaactcgt	8	17	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	104499565	104499565	G	C	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.697	p.Q233E	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	39	0	0	38	13	25.49	-	-	-	C	104499565	G	C	104499565	3	2	346	1	0	0	0	0	1	0	0	0	6834	1299	45	2	2686	2	GRIN3A	9	104499565	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4798855	104499565	36713866	208	37825										
OR13C5	0	genome.wustl.edu	37	chr9	107361642	107361642	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	actcaagtcttgggtgaccaGaaagtcccttcagaaaaaat	8	9	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	107361642	107361642	G	A	SNP	OR13C5	ENST00000374779	human	ensembl	69_37n	-1	known	missense	c.53	p.S18F	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800	38	0	0	0	74	100	-	-	-	A	107361642	G	A	107361642	3	1	346	1	0	0	0	0	1	0	0	0	11010	942	33	2	905	2	OR13C5	9	107361642	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2862077	107361642	33851789	209	37826										
TNFSF15	0	genome.wustl.edu	37	chr9	117553249	117553249	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtagactttgcttaaaaagTgtctcatatcattttcaaaa	5	6	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	117553249	117553249	T	C	SNP	TNFSF15	ENST00000374044	human	ensembl	69_37n	-1	known	missense	c.8	p.H3R	0.000	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	-	no_errors	TNFSF15	HGNC	ENSG00000181634	16	0	0	1	46	97.87	-	-	-	C	117553249	T	C	117553249	3	2	346	1	0	0	0	0	1	0	0	0	16403	1711	59	5		5	TNFSF15	9	117553249	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	10191607	117553249	23660182	210	37827										
DENND1A	0	genome.wustl.edu	37	chr9	126146024	126146024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggcccagtggctgcagtgcGgcctccatgtccaggttgct	14	13	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	126146024	126146024	G	A	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	silent	c.1779	p.A593	0.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	26	0	0	5	7	58.33	-	-	-	A	126146024	G	A	126146024	2	1	346	1	0	0	0	0	0	0	0	1	4462	1103	39	1		1	DENND1A	9	126146024	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8592775	126146024	15067407	211	37828										
NUP214	0	genome.wustl.edu	37	chr9	134103692	134103692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaagtgttcggagagggcacTgcagctgccagcgcaggagg	17	9	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	134103692	134103692	T	C	SNP	NUP214	ENST00000453861	human	ensembl	69_37n	1	known	missense	c.2606	p.L869P	0.954	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP214	HGNC	ENSG00000126883	27	0	0	11	11	50	-	-	-	C	134103692	T	C	134103692	3	2	346	1	0	0	0	0	1	0	0	0	10835	1567	55	5	6178	5	NUP214	9	134103692	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	7957668	134103692	7109739	212	37829										
TSC1	0	genome.wustl.edu	37	chr9	135781265	135781265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctggcattccctgtctcccGcagggctttcatcagcactg	9	15	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	135781265	135781265	G	A	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.1700	p.A567V	0.719	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	42	0	0	26	38	59.38	-	-	-	A	135781265	G	A	135781265	3	1	346	1	0	0	0	0	1	0	0	0	16701	1087	38	1	1830	1	TSC1	9	135781265	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1677573	135781265	5432166	213	37830										
OBP2A	0	genome.wustl.edu	37	chr9	138441760	138441760	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacctggacctaccctccagCcatgacccttccctgctccc	5	22	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	9	138441760	138441760	C	A	SNP	OBP2A	ENST00000340780	human	ensembl	69_37n	1	known	missense	c.657	p.S219R	0.004	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	OBP2A	HGNC	ENSG00000122136	13	0	0	6	4	40	-	-	-	A	138441760	C	A	138441760	3	1	346	1	0	0	0	0	1	0	0	0	10883	754	26	4		4	OBP2A	9	138441760	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2660495	138441760	2771671	214	37831										
TUBB8	0	genome.wustl.edu	37	chr10	93930	93930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccacccagggagtgggtcagCtggaaaccctgcaggcagtc	14	13	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	93930	93930	C	G	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	missense	c.402	p.Q134H	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	58	0	0	21	12	36.36	-	-	-	G	93930	C	G	93930	3	3	346	1	0	0	0	0	1	0	0	0	16858	796	28	4	936	4	TUBB8	10	93930	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		93930	135440817	215	37832										
TUBB8	0	genome.wustl.edu	37	chr10	94066	94066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacactgacctgtaagacagCacagccggtcactcgacggc	10	15	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	94066	94066	C	T	SNP	TUBB8	ENST00000309812	human	ensembl	69_37n	-1	putative	missense	c.289	p.A97T	0.001	superfamily_Tubulin_FtsZ_GTPase,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Beta_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	46	0	0	17	18	51.43	-	-	-	T	94066	C	T	94066	3	4	346	1	0	0	0	0	1	0	0	0	16858	725	25	4		4	TUBB8	10	94066	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	136	94066	135440681	216	37833										
GTPBP4	0	genome.wustl.edu	37	chr10	1043148	1043148	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcaatttgaacttttcctagTgcgtcagcatttatcccgtt	6	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	1043148	1043148	T	C	SNP	GTPBP4	ENST00000360803	human	ensembl	69_37n	1	known	missense	c.461	p.V154A	1.000	NULL	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937	45	0	0	93	97	51.05	-	-	-	C	1043148	T	C	1043148	3	2	346	1	0	0	0	0	1	0	0	0	6933	1710	59	5	479	5	GTPBP4	10	1043148	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	949082	1043148	134491599	217	37834										
IDI1	0	genome.wustl.edu	37	chr10	1088646	1088646	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cactccaagggcgtcactttCctcaagctcggctggattgc	10	14	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	1088646	1088646	C	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.463	p.E155K	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	62	0	0	81	16	16.49	-	-	-	T	1088646	C	T	1088646	3	4	346	1	0	0	0	0	1	0	0	0	7553	864	30	2	399	2	IDI1	10	1088646	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	45498	1088646	134446101	218	37835										
ARMC4	0	genome.wustl.edu	37	chr10	28257852	28257852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cttgctgaccagaaacatacCgaagtaattgtgctcttccg	8	11	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	28257852	28257852	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	missense	c.1238	p.R413Q	0.073	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	36	0	0	1	63	98.44	-	-	-	T	28257852	C	T	28257852	3	4	346	1	0	0	0	0	1	0	0	0	957	666	23	1	1944	1	ARMC4	10	28257852	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	27169206	28257852	107276895	219	37836										
MTPAP	0	genome.wustl.edu	37	chr10	30653319	30653319	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ataacttttttttcttctttTttaatttcttgaccagctct	2	8	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	30653319	30653319	T	G	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	19	0	0	29	19	39.58	-	-	-	G	30653319	T	G	30653319	1	3	346	0	1	0	0	0	0	0	0	0	10028	1856	64	5		5	MTPAP	10	30653319	RNA	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2395467	30653319	104881428	220	37837										
ZNF438	0	genome.wustl.edu	37	chr10	31139222	31139222	+	Frame_Shift_Del	DEL	C	C	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tttgggcacaatttttggtgCaatggtcctaaactgactct							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	31139222	31139222	C	-	DEL	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	frame_shift_del	c.112	p.A38fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	46	0	0	137	31	18.02	-	-	-	-	31139222	C	-	31139222	7	5	346	1	0	1	0	1	0	0	0	0	18006	710	25	0	2382	0	ZNF438	10	31139222	Frame_Shift_Del	DEL	C	TCGA-AO-A12E-01A-11D-A10M-09	485903	31139222	104395525	221	37838										
BMS1	0	genome.wustl.edu	37	chr10	43312807	43312807	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gttaaggaagaaattgacccCgacgaagaagaaagtgccaa	11	7	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	43312807	43312807	C	T	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	silent	c.2445	p.P815	0.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	49	0	0	39	37	48.05	-	-	-	T	43312807	C	T	43312807	2	4	346	1	0	0	0	0	0	0	0	1	1477	639	23	1		1	BMS1	10	43312807	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12173585	43312807	92221940	222	37839										
GPRIN2	0	genome.wustl.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	47000217	47000217	G	A	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.1337	p.R446H	0.016	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	41	0	0	10	4	28.57	-	-	-	A	47000217	G	A	47000217	3	1	346	1	0	0	0	0	1	0	0	0	6781	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3687410	47000217	88534530	223	37840										
FRMPD2	0	genome.wustl.edu	37	chr10	49383976	49383976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atatggcacactggtgttaaTgccaccctgaaaaacacaac	7	11	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	49383976	49383976	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2902	p.I968V	0.060	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	76	0	0	128	30	18.99	-	-	-	C	49383976	T	C	49383976	3	2	346	1	0	0	0	0	1	0	0	0	6107	1464	51	5	1055	5	FRMPD2	10	49383976	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2383759	49383976	86150771	224	37841										
TIMM23	0	genome.wustl.edu	37	chr10	51620361	51620361	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gatccacatttaaataaggaGacagagggttcataccagtt	9	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	51620361	51620361	G	C	SNP	TIMM23	ENST00000260867	human	ensembl	69_37n	-1	known	missense	c.128	p.S43C	1.000	tigrfam_Tim23	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim23	-	no_errors	TIMM23	HGNC	ENSG00000138297	21	0	0	30	40	57.14	-	-	-	C	51620361	G	C	51620361	3	2	346	1	0	0	0	0	1	0	0	0	16006	942	33	2	525	2	TIMM23	10	51620361	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2236385	51620361	83914386	225	37842										
RHOBTB1	0	genome.wustl.edu	37	chr10	62631801	62631801	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aattccttatgtcatctcacAttaatatgtgaccaccagcc	4	12	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	62631801	62631801	A	G	SNP	RHOBTB1	ENST00000490827	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RHOBTB1	HGNC	ENSG00000072422	53	0	0	14	18	56.25	-	-	-	G	62631801	A	G	62631801	1	3	346	0	1	0	0	0	0	0	0	0	13417	232	8	5		5	RHOBTB1	10	62631801	RNA	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	11011440	62631801	72902946	226	37843										
HERC4	0	genome.wustl.edu	37	chr10	69692462	69692462	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccacagaccttatgaaagccCgcatgaaaagcatcaaataa	6	11	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	69692462	69692462	C	T	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	silent	c.2754	p.A918	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	81	0	0	179	54	23.18	-	-	-	T	69692462	C	T	69692462	2	4	346	1	0	0	0	0	0	0	0	1	7111	639	23	1		1	HERC4	10	69692462	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7060661	69692462	65842285	227	37844										
COL13A1	0	genome.wustl.edu	37	chr10	71665573	71665573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggatccagggctaccacggcCggaaggtaagatggaggggg	19	8	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	71665573	71665573	C	T	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	missense	c.946	p.R316W	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	46	0	0	77	18	18.75	-	-	-	T	71665573	C	T	71665573	3	4	346	1	0	0	0	0	1	0	0	0	3700	643	23	1	1012	1	COL13A1	10	71665573	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1973111	71665573	63869174	228	37845										
CDH23	0	genome.wustl.edu	37	chr10	73569609	73569609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcattctgcgcaccttcgacCtcttcatggcctacagcccc	7	18	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	73569609	73569609	C	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.8764	p.L2922F	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	17	0	0	8	8	50	-	-	-	T	73569609	C	T	73569609	3	4	346	1	0	0	0	0	1	0	0	0	3137	681	24	4	9338	4	CDH23	10	73569609	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1904036	73569609	61965138	229	37846										
AGAP5	0	genome.wustl.edu	37	chr10	75442543	75442543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtattgttgactgaaacgctCagtagatacctgaaggggaa	12	6	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	75442543	75442543	C	T	SNP	AGAP5	ENST00000374094	human	ensembl	69_37n	-1	known	missense	c.406	p.E136K	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650	71	0	0	53	39	42.39	-	-	-	T	75442543	C	T	75442543	3	4	346	1	0	0	0	0	1	0	0	0	371	835	29	2	1670	2	AGAP5	10	75442543	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1872934	75442543	60092204	230	37847										
TSPAN14	0	genome.wustl.edu	37	chr10	82271903	82271903	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcttttgtggttgcagaacCagtgctgtggcgcatatggc	15	8	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	82271903	82271903	C	G	SNP	TSPAN14	ENST00000372156	human	ensembl	69_37n	1	known	missense	c.454	p.Q152E	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN14	HGNC	ENSG00000108219	17	0	0	26	21	44.68	-	-	-	G	82271903	C	G	82271903	3	3	346	1	0	0	0	0	1	0	0	0	16734	595	21	4	472	4	TSPAN14	10	82271903	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	6829360	82271903	53262844	231	37848										
FAM22D	0	genome.wustl.edu	37	chr10	89124859	89124859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccgagaaacaacgggaagagGgcgaagtgaagcagccacag	15	9	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	89124859	89124859	G	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1417	p.G473S	0.001	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	18	0	0	1	3	75	-	-	-	A	89124859	G	A	89124859	3	1	346	1	0	0	0	0	1	0	0	0	5586	1232	43	4	1435	4	FAM22D	10	89124859	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6852956	89124859	46409888	232	37849										
MYOF	0	genome.wustl.edu	37	chr10	95191210	95191210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agcagggagatcagcttgtaCggcagggatctgctctggtc	15	9	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	95191210	95191210	C	T	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	silent	c.300	p.P100	0.072	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	156	0	0	92	45	32.85	-	-	-	T	95191210	C	T	95191210	2	4	346	1	0	0	0	0	0	0	0	1	10161	523	19	1		1	MYOF	10	95191210	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	6066351	95191210	40343537	233	37850										
SEMA4G	0	genome.wustl.edu	37	chr10	102739721	102739721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcgctggggtcgctatgaggGtggggtgcctgagccccggc	20	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	102739721	102739721	G	A	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.1100	p.G367D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	39	0	0	19	13	40.62	-	-	-	A	102739721	G	A	102739721	3	1	346	1	0	0	0	0	1	0	0	0	14124	1261	44	4	1134	4	SEMA4G	10	102739721	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7548511	102739721	32795026	234	37851										
GSTO2	0	genome.wustl.edu	37	chr10	106037790	106037790	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	attgcttgtgagtacctggaTgatgcttatccaggaaggaa	12	6	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	106037790	106037790	T	A	SNP	GSTO2	ENST00000338595	human	ensembl	69_37n	1	known	missense	c.282	p.D94E	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_omega	-	no_errors	GSTO2	HGNC	ENSG00000065621	58	0	0	155	135	46.55	-	-	-	A	106037790	T	A	106037790	3	1	346	1	0	0	0	0	1	0	0	0	6894	1461	51	5	292	5	GSTO2	10	106037790	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3298069	106037790	29496957	235	37852										
DCLRE1A	0	genome.wustl.edu	37	chr10	115607018	115607018	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aatccagcataatgatcagaAtgaaaatgtgtgagaaaata	8	4	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	115607018	115607018	A	T	SNP	DCLRE1A	ENST00000361384	human	ensembl	69_37n	-1	known	missense	c.2202	p.H734Q	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	57	0	0	66	52	44.07	-	-	-	T	115607018	A	T	115607018	3	4	346	1	0	0	0	0	1	0	0	0	4325	98	4	5	948	5	DCLRE1A	10	115607018	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	9569228	115607018	19927729	236	37853										
IKZF5	0	genome.wustl.edu	37	chr10	124753899	124753899	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagtcagtctggatatttggGatttcgtgggtaaaatcgtt	13	4	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	10	124753899	124753899	G	A	SNP	IKZF5	ENST00000368886	human	ensembl	69_37n	-1	known	silent	c.657	p.I219	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574	263	0	0	219	69	23.88	-	-	-	A	124753899	G	A	124753899	2	1	346	1	0	0	0	0	0	0	0	1	7672	1164	41	2		2	IKZF5	10	124753899	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	9146881	124753899	10780848	237	37854										
SIRT3	0	genome.wustl.edu	37	chr11	223796	223796	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gccctggaagggcccatgagAtgactcctgtacccctccct	10	16	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	223796	223796	A	G	SNP	SIRT3	ENST00000529937	human	ensembl	69_37n	-1	known	silent	c.363	p.H121	0.093	pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	18	0	0	6	5	45.45	-	-	-	G	223796	A	G	223796	2	3	346	1	0	0	0	0	0	0	0	1	14428	348	12	5		5	SIRT3	11	223796	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		223796	134782720	238	37855										
SIRT3	0	genome.wustl.edu	37	chr11	223823	223823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgtacccctcccttcccctGccctccagcctcctccctgc	4	25	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	223823	223823	G	A	SNP	SIRT3	ENST00000529937	human	ensembl	69_37n	-1	known	silent	c.336	p.G112	0.000	pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	17	0	0	5	4	44.44	-	-	-	A	223823	G	A	223823	2	1	346	1	0	0	0	0	0	0	0	1	14428	1334	46	4		4	SIRT3	11	223823	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	27	223823	134782693	239	37856										
CD151	0	genome.wustl.edu	37	chr11	838187	838187	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggagtctcaagctggagcacTactgaccctgccttgggcct	12	13	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	838187	838187	T	C	SNP	CD151	ENST00000322008	human	ensembl	69_37n	1	known	missense	c.757	p.Y253H	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD151	HGNC	ENSG00000177697	127	1	0.78	26	15	36.59	-	-	-	C	838187	T	C	838187	3	2	346	1	0	0	0	0	1	0	0	0	2994	1522	53	5	783	5	CD151	11	838187	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	614364	838187	134168329	240	37857										
MUC6	0	genome.wustl.edu	37	chr11	1017655	1017655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcctgtactggtggggttggGggtgatgttggtggtagaag	20	3	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	1017655	1017655	G	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.5146	p.P1716S	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	2849	7	0.24	837	154	15.51	-	-	-	A	1017655	G	A	1017655	3	1	346	1	0	0	0	0	1	0	0	0	10052	1232	43	4	2185	4	MUC6	11	1017655	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	179468	1017655	133988861	241	37858										
CARS	0	genome.wustl.edu	37	chr11	3061128	3061128	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aatttgaagtaatccttcaaCactcttctcaagatatcaaa	3	9	4	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	3061128	3061128	C	T	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	silent	c.489	p.V163	0.940	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	159	0	0	193	180	48.26	-	-	-	T	3061128	C	T	3061128	2	4	346	1	0	0	0	0	0	0	0	1	2682	465	17	4		4	CARS	11	3061128	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2043473	3061128	131945388	242	37859										
NUP98	0	genome.wustl.edu	37	chr11	3721868	3721868	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctggtaagtctcctgatgcTtctttaacccaatctgcata	6	11	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	3721868	3721868	T	C	SNP	NUP98	ENST00000429801	human	ensembl	69_37n	-1	novel	missense	c.571	p.S191G	0.006	NULL	pfam_Nup96	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP98	HGNC	ENSG00000110713	68	0	0	99	104	51.23	-	-	-	C	3721868	T	C	3721868	3	2	346	1	0	0	0	0	1	0	0	0	10846	1606	56	5	1728	5	NUP98	11	3721868	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	660740	3721868	131284648	243	37860										
OR51A2	0	genome.wustl.edu	37	chr11	4976145	4976145	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aatgaggggagagacatgccCggcaaagcggtggacaacgg	17	8	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	4976145	4976145	C	G	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	missense	c.799	p.G267R	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	57	0	0	0	11	100	-	-	-	G	4976145	C	G	4976145	3	3	346	1	0	0	0	0	1	0	0	0	11159	652	23	3	144	3	OR51A2	11	4976145	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1254277	4976145	130030371	244	37861										
HPX	0	genome.wustl.edu	37	chr11	6452443	6452443	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctcatgtcagaaggcccctcAgtgagtgcagcccaggagac	12	13	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	6452443	6452443	A	G	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	nonstop	c.1387	p.*463R	0.003	NULL	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	59	0	0	20	19	48.72	-	-	-	G	6452443	A	G	6452443	4	3	346	1	0	0	0	0	0	0	0	0	7397	201	7	5	5	5	HPX	11	6452443	Nonstop_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	1476298	6452443	128554073	245	37862										
PDE3B	0	genome.wustl.edu	37	chr11	14880747	14880747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	attgaagcaatccttgctacGgatcttaaaaagcattttga	7	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	14880747	14880747	G	A	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	silent	c.2679	p.T893	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	45	0	0	154	154	49.84	-	-	-	A	14880747	G	A	14880747	2	1	346	1	0	0	0	0	0	0	0	1	11711	1103	39	1		1	PDE3B	11	14880747	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8428304	14880747	120125769	246	37863										
SAA1	0	genome.wustl.edu	37	chr11	18290866	18290866	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggacctgggggtgcctgggcTgcagaagtgatcacgtaact	16	9	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	18290866	18290866	T	C	SNP	SAA1	ENST00000356524	human	ensembl	69_37n	1	known	silent	c.216	p.A72	0.368	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	-	no_errors	SAA1	HGNC	ENSG00000173432	114	0	0	56	24	30	-	-	-	C	18290866	T	C	18290866	2	2	346	1	0	0	0	0	0	0	0	1	13884	1567	55	5		5	SAA1	11	18290866	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3410119	18290866	116715650	247	37864										
QSER1	0	genome.wustl.edu	37	chr11	32956011	32956011	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctgcccttcagtcaaaaatGactcttgatcaacagcacat	5	13	4	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	32956011	32956011	G	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2820	p.M940I	0.014	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	47	0	0	40	30	42.86	-	-	-	A	32956011	G	A	32956011	3	1	346	1	0	0	0	0	1	0	0	0	12965	1290	45	2	2826	2	QSER1	11	32956011	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	14665145	32956011	102050505	248	37865										
SYT13	0	genome.wustl.edu	37	chr11	45265780	45265780	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccacactggaggcctgcagCaggtcgtcaggcagctcaaa	12	13	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	45265780	45265780	C	G	SNP	SYT13	ENST00000020926	human	ensembl	69_37n	-1	known	silent	c.1104	p.L368	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT13	HGNC	ENSG00000019505	35	0	0	32	20	38.46	-	-	-	G	45265780	C	G	45265780	2	3	346	1	0	0	0	0	0	0	0	1	15561	697	25	4		4	SYT13	11	45265780	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12309769	45265780	89740736	249	37866										
OR9G1	0	genome.wustl.edu	37	chr11	56467914	56467914	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tttatactgctgggcttcacCacagacccaggaatgcagct	9	12	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	56467914	56467914	C	G	SNP	OR9G1	ENST00000312153	human	ensembl	69_37n	1	known	silent	c.51	p.T17	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914	91	0	0	65	49	42.98	-	-	-	G	56467914	C	G	56467914	2	3	346	1	0	0	0	0	0	0	0	1	11323	581	21	4		4	OR9G1	11	56467914	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	11202134	56467914	78538602	250	37867										
YPEL4	0	genome.wustl.edu	37	chr11	57413798	57413798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agcccagtgtggttttgcagCtctcacagaaaatgtcagct	10	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	57413798	57413798	C	T	SNP	YPEL4	ENST00000300022	human	ensembl	69_37n	-1	known	missense	c.266	p.S89N	1.000	pfam_Yippee	pfam_Yippee	-	no_errors	YPEL4	HGNC	ENSG00000166793	65	0	0	37	14	27.45	-	-	-	T	57413798	C	T	57413798	3	4	346	1	0	0	0	0	1	0	0	0	17589	797	28	4	125	4	YPEL4	11	57413798	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	945884	57413798	77592718	251	37868										
CLP1	0	genome.wustl.edu	37	chr11	57428875	57428875	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgcctaagaacttccttctCatcatggatatccggttcat	6	12	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	57428875	57428875	C	T	SNP	CLP1	ENST00000525602	human	ensembl	69_37n	1	known	silent	c.1245	p.L415	1.000	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	CLP1	HGNC	ENSG00000172409	72	0	0	16	25	60.98	-	-	-	T	57428875	C	T	57428875	2	4	346	1	0	0	0	0	0	0	0	1	3580	813	29	2		2	CLP1	11	57428875	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	15077	57428875	77577641	252	37869										
OR10Q1	0	genome.wustl.edu	37	chr11	57995434	57995434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggataatggcactcctcagaGcacctttgacatccttgttc	8	12	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	57995434	57995434	G	C	SNP	OR10Q1	ENST00000316770	human	ensembl	69_37n	-1	known	missense	c.914	p.A305G	0.518	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475	43	0	0	33	10	23.26	-	-	-	C	57995434	G	C	57995434	3	2	346	1	0	0	0	0	1	0	0	0	10989	971	34	4	49	4	OR10Q1	11	57995434	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	566559	57995434	77011082	253	37870										
OR5B21	0	genome.wustl.edu	37	chr11	58274817	58274817	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagttgggctgtaagtacatGaagatgattgtgccatagaa	13	4	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	58274817	58274817	G	A	SNP	OR5B21	ENST00000360374	human	ensembl	69_37n	-1	known	silent	c.762	p.F254	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B21	HGNC	ENSG00000198283	142	0	0	79	45	36.29	-	-	-	A	58274817	G	A	58274817	2	1	346	1	0	0	0	0	0	0	0	1	11224	1281	45	2		2	OR5B21	11	58274817	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	279383	58274817	76731699	254	37871										
CYBASC3	0	genome.wustl.edu	37	chr11	61124159	61124159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agggaccccagcagcaggcaGgacaagtagaaccgtccaga	13	12	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	61124159	61124159	G	A	SNP	CYBASC3	ENST00000426130	human	ensembl	69_37n	-1	known	silent	c.78	p.S26	0.791	NULL	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBASC3	HGNC	ENSG00000162144	69	0	0	41	18	30.51	-	-	-	A	61124159	G	A	61124159	2	1	346	1	0	0	0	0	0	0	0	1	4163	987	35	4		4	CYBASC3	11	61124159	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2849342	61124159	73882357	255	37872										
PCNXL3	0	genome.wustl.edu	37	chr11	65388360	65388360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atgtccctgaggctacaggcGgcctgaacctgctgcagccg	13	14	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	65388360	65388360	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.2158	p.G720S	0.970	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	25	0	0	4	7	63.64	-	-	-	A	65388360	G	A	65388360	3	1	346	1	0	0	0	0	1	0	0	0	11666	1116	39	1	2196	1	PCNXL3	11	65388360	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4264201	65388360	69618156	256	37873										
CCDC81	0	genome.wustl.edu	37	chr11	86103702	86103702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttttatcgcgttccatttccAtgaaacaaaatgtggagttt	7	7	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	86103702	86103702	A	G	SNP	CCDC81	ENST00000445632	human	ensembl	69_37n	1	known	missense	c.418	p.M140V	0.789	NULL	superfamily_IHF-like_DNA-bd	-	no_errors	CCDC81	HGNC	ENSG00000149201	141	0	0	71	152	68.16	-	-	-	G	86103702	A	G	86103702	3	3	346	1	0	0	0	0	1	0	0	0	2882	217	8	5	432	5	CCDC81	11	86103702	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	20715342	86103702	48902814	257	37874										
MRE11A	0	genome.wustl.edu	37	chr11	94225807	94225807	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tatttaaaacattccaaataCcctttttgatgactaatatt	2	7	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	94225807	94225807	C	T	SNP	MRE11A	ENST00000407439	human	ensembl	69_37n	-1	putative	splice_site	c.29+1	e1+1	0.004	-	-	-	no_errors	MRE11A	HGNC	ENSG00000020922	18	0	0	27	6	18.18	-	-	-	T	94225807	C	T	94225807	5	4	346	1	0	0	0	0	0	0	1	0	9831	522	18	4		4	MRE11A	11	94225807	Splice_Site	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	8122105	94225807	40780709	258	37875										
VPS11	0	genome.wustl.edu	37	chr11	118952249	118952249	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aacaaattgactctgctgacCgaccctcccacagccagact	6	16	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	118952249	118952249	C	T	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	36	0	0	6	13	68.42	-	-	-	T	118952249	C	T	118952249	1	4	346	0	1	0	0	0	0	0	0	0	17285	639	23	1		1	VPS11	11	118952249	RNA	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	24726442	118952249	16054267	259	37876										
TBCEL	0	genome.wustl.edu	37	chr11	120925823	120925823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtcttgtccttctatttgctGtcattctcttaagctactac	5	11	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	120925823	120925823	G	A	SNP	TBCEL	ENST00000422003	human	ensembl	69_37n	1	known	missense	c.518	p.C173Y	1.000	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114	103	1	0.95	208	32	13.33	-	-	-	A	120925823	G	A	120925823	3	1	346	1	0	0	0	0	1	0	0	0	15730	1377	48	4	532	4	TBCEL	11	120925823	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1973574	120925823	14080693	260	37877										
OR8B8	0	genome.wustl.edu	37	chr11	124310652	124310652	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgacaggatgaaggactcAgagacaacaaagaaaagaaa	11	6	1	5			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	11	124310652	124310652	A	G	SNP	OR8B8	ENST00000328064	human	ensembl	69_37n	-1	putative	silent	c.330	p.S110	0.974	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125	123	0	0	63	33	34.38	-	-	-	G	124310652	A	G	124310652	2	3	346	1	0	0	0	0	0	0	0	1	11303	175	7	5		5	OR8B8	11	124310652	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	3384829	124310652	10695864	261	37878										
CHD4	0	genome.wustl.edu	37	chr12	6701926	6701926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttccagattgttttgtaatgGtgtcccagtcagcaacagct	9	9	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	6701926	6701926	G	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2710	p.P904T	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	87	0	0	136	31	18.34	-	-	-	T	6701926	G	T	6701926	3	4	346	1	0	0	0	0	1	0	0	0	3356	1261	44	4	3120	4	CHD4	12	6701926	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		6701926	127149969	262	37879										
ZNF705A	0	genome.wustl.edu	37	chr12	8327888	8327888	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggaaaagagctgtggcgggaAggaagagaatttcttcaaga	15	4	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	8327888	8327888	A	G	SNP	ZNF705A	ENST00000359286	human	ensembl	69_37n	1	known	silent	c.204	p.E68	0.003	pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705A	HGNC	ENSG00000196946	160	0	0	153	55	26.44	-	-	-	G	8327888	A	G	8327888	2	3	346	1	0	0	0	0	0	0	0	1	18204	69	3	5		5	ZNF705A	12	8327888	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	1625962	8327888	125524007	263	37880										
CLEC4E	0	genome.wustl.edu	37	chr12	8689797	8689797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgcccaggaaatggtgtcagTagaaaagaagtagcagctgg	14	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	8689797	8689797	T	C	SNP	CLEC4E	ENST00000299663	human	ensembl	69_37n	-1	known	missense	c.286	p.T96A	0.194	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4E	HGNC	ENSG00000166523	22	0	0	53	74	58.27	-	-	-	C	8689797	T	C	8689797	3	2	346	1	0	0	0	0	1	0	0	0	3545	1638	57	5	385	5	CLEC4E	12	8689797	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	361909	8689797	125162098	264	37881										
TAS2R43	0	genome.wustl.edu	37	chr12	11244725	11244725	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agatcttttgtctcttgaacCactcaatggaatttaccagt	6	9	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	11244725	11244725	C	G	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	missense	c.104	p.W35S	0.929	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	9	0	0	7	48	87.27	-	-	-	G	11244725	C	G	11244725	3	3	346	1	0	0	0	0	1	0	0	0	15673	595	21	4	829	4	TAS2R43	12	11244725	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2554928	11244725	122607170	265	37882										
TM7SF3	0	genome.wustl.edu	37	chr12	27135726	27135726	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgttttccagaatctgtgtCcaaagaaacaaatgaagaaa	7	7	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	27135726	27135726	C	A	SNP	TM7SF3	ENST00000343028	human	ensembl	69_37n	-1	known	missense	c.935	p.G312V	1.000	NULL	NULL	-	no_errors	TM7SF3	HGNC	ENSG00000064115	151	0	0	111	135	54.88	-	-	-	A	27135726	C	A	27135726	3	1	346	1	0	0	0	0	1	0	0	0	16070	855	30	2	801	2	TM7SF3	12	27135726	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	15891001	27135726	106716169	266	37883										
PDZRN4	0	genome.wustl.edu	37	chr12	41961629	41961629	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaaggaatgaattcttagaGgagttaaacttggagatgtt	12	2	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	41961629	41961629	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	silent	c.1512	p.E504	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	59	0	0	36	63	63.64	-	-	-	A	41961629	G	A	41961629	2	1	346	1	0	0	0	0	0	0	0	1	11783	991	35	4		4	PDZRN4	12	41961629	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	14825903	41961629	91890266	267	37884										
HDAC7	0	genome.wustl.edu	37	chr12	48185714	48185714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagatgctctggatgcggccGgcgtgctccgggtgcctgct	16	13	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	48185714	48185714	G	A	SNP	HDAC7	ENST00000551602	human	ensembl	69_37n	-1	known	missense	c.37	p.R13W	0.089	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDAC7	HGNC	ENSG00000061273	10	0	0	1	4	80	-	-	-	A	48185714	G	A	48185714	3	1	346	1	0	0	0	0	1	0	0	0	7063	1103	39	1	1275	1	HDAC7	12	48185714	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6224085	48185714	85666181	268	37885										
LIMA1	0	genome.wustl.edu	37	chr12	50571195	50571195	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtttttcccacattcccattCttcttagaagccttggcatt	5	12	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	50571195	50571195	C	G	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.1935	p.K645N	0.905	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	348	1	0.28	301	149	33.11	-	-	-	G	50571195	C	G	50571195	3	3	346	1	0	0	0	0	1	0	0	0	8851	912	32	2	351	2	LIMA1	12	50571195	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2385481	50571195	83280700	269	37886										
ANKRD33	0	genome.wustl.edu	37	chr12	52283229	52283229	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaacgccgggaccagcggggGctcacggcgttaatgaaggc	17	11	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	52283229	52283229	G	A	SNP	ANKRD33	ENST00000340970	human	ensembl	69_37n	1	known	silent	c.195	p.G65	0.979	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33	HGNC	ENSG00000167612	14	0	0	5	18	78.26	-	-	-	A	52283229	G	A	52283229	2	1	346	1	0	0	0	0	0	0	0	1	660	1190	42	4		4	ANKRD33	12	52283229	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1712034	52283229	81568666	270	37887										
KRT5	0	genome.wustl.edu	37	chr12	52912906	52912906	+	Silent	SNP	G	G	T													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcctgcagcagggtccacttGgtgtccagaaccttgttctg							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	52912906	52912906	G	T	SNP	KRT5	ENST00000252242	human	ensembl	69_37n	-1	known	silent	c.594	p.T198	1.000	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	55	0	0	0	85	100	-	-	-	T	52912906	G	T	52912906	2	4	346	1	0	0	0	0	0	0	0	1	8532	1335	47	4		4	KRT5	12	52912906	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	629677	52912906	80938989	271	37888	310	2								
KRT5	0	genome.wustl.edu	37	chr12	52912909	52912909	+	Missense_Mutation	SNP	G	G	T													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgcagcagggtccacttggtGtccagaaccttgttctgctg							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	52912909	52912909	G	T	SNP	KRT5	ENST00000252242	human	ensembl	69_37n	-1	known	missense	c.591	p.D197E	1.000	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	56	0	0	0	82	100	-	-	-	T	52912909	G	T	52912909	3	4	346	1	0	0	0	0	1	0	0	0	8532	1368	48	4	1213	4	KRT5	12	52912909	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3	52912909	80938986	272	37889	310	2								
SP1	0	genome.wustl.edu	37	chr12	53800381	53800381	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aatttcaggtgatcatggagCtcagcttggtctccatgggg	13	8	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	53800381	53800381	C	G	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.1688	p.A563G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	39	0	0	36	65	64.36	-	-	-	G	53800381	C	G	53800381	3	3	346	1	0	0	0	0	1	0	0	0	15048	797	28	4	1702	4	SP1	12	53800381	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	887472	53800381	80051514	273	37890										
OR6C74	0	genome.wustl.edu	37	chr12	55641293	55641293	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaagtctcattcacaactgtCtacattcccaaatttcttgt	4	11	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	55641293	55641293	C	T	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	silent	c.222	p.V74	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	77	0	0	98	124	55.86	-	-	-	T	55641293	C	T	55641293	2	4	346	1	0	0	0	0	0	0	0	1	11271	900	32	2		2	OR6C74	12	55641293	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1840912	55641293	78210602	274	37891										
ITGA7	0	genome.wustl.edu	37	chr12	56079048	56079048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gggcacggtggcctcggggtGcttcgcccgtttgaagaatc	16	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	56079048	56079048	G	A	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	missense	c.3340	p.H1114Y	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	15	0	0	18	25	58.14	-	-	-	A	56079048	G	A	56079048	3	1	346	1	0	0	0	0	1	0	0	0	7935	1319	46	4	209	4	ITGA7	12	56079048	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	437755	56079048	77772847	275	37892										
ITGA7	0	genome.wustl.edu	37	chr12	56092319	56092319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caccccccagctcttcttggCgctcaaagaagtagggggca	11	14	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	56092319	56092319	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	69_37n	-1	known	missense	c.1172	p.R391H	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	27	0	0	37	11	22.92	-	-	-	T	56092319	C	T	56092319	3	4	346	1	0	0	0	0	1	0	0	0	7935	768	27	1	2449	1	ITGA7	12	56092319	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	13271	56092319	77759576	276	37893										
AGAP2	0	genome.wustl.edu	37	chr12	58125681	58125681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agctgcctcggctcggagctCccggtgaccaacattcggtg	13	14	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	58125681	58125681	C	T	SNP	AGAP2	ENST00000547588	human	ensembl	69_37n	-1	known	missense	c.1864	p.E622K	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	67	0	0	26	14	35	-	-	-	T	58125681	C	T	58125681	3	4	346	1	0	0	0	0	1	0	0	0	368	864	30	2	1762	2	AGAP2	12	58125681	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2033362	58125681	75726214	277	37894										
ZFC3H1	0	genome.wustl.edu	37	chr12	72009055	72009055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaaattccctttacataaaCgagatggaatgtcaattggt	7	7	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	72009055	72009055	C	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.5186	p.R1729H	0.144	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	77	0	0	141	120	45.98	-	-	-	T	72009055	C	T	72009055	3	4	346	1	0	0	0	0	1	0	0	0	17729	536	19	1	815	1	ZFC3H1	12	72009055	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	13883374	72009055	61842840	278	37895										
AMDHD1	0	genome.wustl.edu	37	chr12	96350696	96350696	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgcgcccggcgggagctggaCatcggcatctcggctaccta	14	15	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	96350696	96350696	C	G	SNP	AMDHD1	ENST00000266736	human	ensembl	69_37n	1	known	missense	c.543	p.D181E	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344	18	0	0	5	14	73.68	-	-	-	G	96350696	C	G	96350696	3	3	346	1	0	0	0	0	1	0	0	0	567	477	17	4	557	4	AMDHD1	12	96350696	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	24341641	96350696	37501199	279	37896										
TXNRD1	0	genome.wustl.edu	37	chr12	104703836	104703836	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agctctgcctttcaccccctAcatctgatagtaggcaagag	8	13	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	104703836	104703836	A	G	SNP	TXNRD1	ENST00000427956	human	ensembl	69_37n	1	known	missense	c.268	p.T90A	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	14	0	0	0	9	100	-	-	-	G	104703836	A	G	104703836	3	3	346	1	0	0	0	0	1	0	0	0	16904	406	14	5		5	TXNRD1	12	104703836	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	8353140	104703836	29148059	280	37897										
APPL2	0	genome.wustl.edu	37	chr12	105583877	105583877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cttcaggtagactggctgttGctttgggaacaatcttgtca	11	8	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	105583877	105583877	G	A	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	missense	c.1316	p.A439V	0.003	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	74	0	0	143	80	35.87	-	-	-	A	105583877	G	A	105583877	3	1	346	1	0	0	0	0	1	0	0	0	820	1319	46	4	724	4	APPL2	12	105583877	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	880041	105583877	28268018	281	37898										
USP30	0	genome.wustl.edu	37	chr12	109494574	109494574	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gttatttggggtcccattacAgaaagaaagaagcgtagaaa	11	5	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	109494574	109494574	A	G	SNP	USP30	ENST00000257548	human	ensembl	69_37n	1	known	silent	c.171	p.T57	0.914	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP30	HGNC	ENSG00000135093	144	0	0	161	83	34.02	-	-	-	G	109494574	A	G	109494574	2	3	346	1	0	0	0	0	0	0	0	1	17158	175	7	5		5	USP30	12	109494574	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	3910697	109494574	24357321	282	37899										
P2RX7	0	genome.wustl.edu	37	chr12	121614976	121614976	+	Frame_Shift_Del	DEL	G	G	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaatttgacattatccagctGgttgtgtacatcggctcaac							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	121614976	121614976	G	-	DEL	P2RX7	ENST00000546057	human	ensembl	69_37n	1	known	frame_shift_del	c.999	p.V334fs	0.732	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X7_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX7	HGNC	ENSG00000089041	71	0	0	106	168	59.57	-	-	-	-	121614976	G	-	121614976	7	5	346	1	0	1	0	1	0	0	0	0	11418	1335	47	0	1037	0	P2RX7	12	121614976	Frame_Shift_Del	DEL	G	TCGA-AO-A12E-01A-11D-A10M-09	12120402	121614976	12236919	283	37900										
RILPL1	0	genome.wustl.edu	37	chr12	124008109	124008109	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagaggttggtcatgagctgCttgttctcctcctgcagctg	13	10	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	124008109	124008109	C	T	SNP	RILPL1	ENST00000376874	human	ensembl	69_37n	-1	known	silent	c.393	p.K131	0.999	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026	45	0	0	53	9	14.52	-	-	-	T	124008109	C	T	124008109	2	4	346	1	0	0	0	0	0	0	0	1	13445	796	28	4		4	RILPL1	12	124008109	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2393133	124008109	9843786	284	37901										
UBC	0	genome.wustl.edu	37	chr12	125397061	125397061	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcaaagatcaacctctgctgGtcaggagggatgccttcctt	11	11	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	125397061	125397061	G	A	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	silent	c.1257	p.D419	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	154	0	0	97	54	35.76	-	-	-	A	125397061	G	A	125397061	2	1	346	1	0	0	0	0	0	0	0	1	16939	1252	44	4		4	UBC	12	125397061	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1388952	125397061	8454834	285	37902										
UBC	0	genome.wustl.edu	37	chr12	125397364	125397364	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcactcggctccacttcgagAgtgatggtcttaccagtcag	10	12	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	125397364	125397364	A	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	silent	c.954	p.T318	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	230	2	0.86	137	80	36.87	-	-	-	G	125397364	A	G	125397364	2	3	346	1	0	0	0	0	0	0	0	1	16939	291	11	5		5	UBC	12	125397364	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	303	125397364	8454531	286	37903										
POLE	0	genome.wustl.edu	37	chr12	133219516	133219516	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caggagctcagggcccacctTctccaggaggaggccgtgct	14	14	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	12	133219516	133219516	T	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.4651	p.K1551E	1.000	pfam_DNA_pol_e_suA_C	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	31	0	0	16	29	64.44	-	-	-	C	133219516	T	C	133219516	3	2	346	1	0	0	0	0	1	0	0	0	12270	1792	62	5	2298	5	POLE	12	133219516	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	7822152	133219516	632379	287	37904										
XPO4	0	genome.wustl.edu	37	chr13	21357913	21357914	+	Frame_Shift_Del	DEL	TT	TT	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccataaattcttctaaactcTttaagaaggccatcttctgc							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	13	21357913	21357914	TT	-	DEL	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	frame_shift_del	c.3404_3403	p.K1135fs	1.000:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	67	0	0	70	40	36.04	-	-	-	-	21357914	TT	-	21357913	7	5	346	1	0	1	0	1	0	0	0	0	17543	1609	56	0	55	0	XPO4	13	21357913	Frame_Shift_Del	DEL	TT	TCGA-AO-A12E-01A-11D-A10M-09		21357913	93811965	288	37905										
BRCA2	0	genome.wustl.edu	37	chr13	32969049	32969049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cactttcaagagacattcaaCaaaatgaaaaatactgttga	5	7	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	13	32969049	32969049	C	T	SNP	BRCA2	ENST00000470094	human	ensembl	69_37n	1	known	missense	c.437	p.T146I	1.000	pfam_BRCA2_OB_3,superfamily_NA-bd_OB-fold-like	pfam_BRCA2_OB_3,superfamily_NA-bd_OB-fold-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRCA2	HGNC	ENSG00000139618	87	0	0	129	51	28.33	-	-	-	T	32969049	C	T	32969049	3	4	346	1	0	0	0	0	1	0	0	0	1507	477	17	4	9574	4	BRCA2	13	32969049	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	11611136	32969049	82200829	289	37906										
THSD1	0	genome.wustl.edu	37	chr13	52952664	52952664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccccgtgggcccgtctccccCatccgagaagctcccgcgct	10	21	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	13	52952664	52952664	C	T	SNP	THSD1	ENST00000258613	human	ensembl	69_37n	-1	known	missense	c.1441	p.G481R	0.001	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114	25	0	0	18	7	28	-	-	-	T	52952664	C	T	52952664	3	4	346	1	0	0	0	0	1	0	0	0	15972	594	21	4	1121	4	THSD1	13	52952664	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	19983615	52952664	62217214	290	37907										
ATP11A	0	genome.wustl.edu	37	chr13	113510346	113510346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agctcttcctggaaatctgcCggagctgcagcgcggtgctc	13	13	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	13	113510346	113510346	C	T	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.2365	p.R789W	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	15	0	0	13	19	57.58	-	-	-	T	113510346	C	T	113510346	3	4	346	1	0	0	0	0	1	0	0	0	1123	643	23	1	2443	1	ATP11A	13	113510346	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	60557682	113510346	1659532	291	37908										
OR11H12	0	genome.wustl.edu	37	chr14	19378117	19378117	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctgtggttcctgatccccaTtgttctcatctctcagatgc	7	13	4	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	19378117	19378117	T	C	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	missense	c.524	p.I175T	0.061	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	282	0	0	345	46	11.76	-	-	-	C	19378117	T	C	19378117	3	2	346	1	0	0	0	0	1	0	0	0	11000	1493	52	5	526	5	OR11H12	14	19378117	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09		19378117	87971423	292	37909										
OR11H12	0	genome.wustl.edu	37	chr14	19378395	19378395	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgtggtatcactgtgctatAgctctcttatggtcatgtat	9	8	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	19378395	19378395	A	G	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	1	known	missense	c.802	p.S268G	0.193	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	86	0	0	99	13	11.61	-	-	-	G	19378395	A	G	19378395	3	3	346	1	0	0	0	0	1	0	0	0	11000	420	15	5	804	5	OR11H12	14	19378395	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	278	19378395	87971145	293	37910										
SLC22A17	0	genome.wustl.edu	37	chr14	23821005	23821005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggtagccggaggcaaagccCaagatgaagaggatctgctc	14	9	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	23821005	23821005	C	G	SNP	SLC22A17	ENST00000206544	human	ensembl	69_37n	-1	known	missense	c.327	p.L109F	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096	38	0	0	13	9	40.91	-	-	-	G	23821005	C	G	23821005	3	3	346	1	0	0	0	0	1	0	0	0	14537	593	21	4	1321	4	SLC22A17	14	23821005	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4442610	23821005	83528535	294	37911										
PCK2	0	genome.wustl.edu	37	chr14	24569343	24569343	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgagaccagtgatggtggCgtgtactgggagggcattga	18	6	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	24569343	24569343	C	T	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	silent	c.1155	p.G385	0.889	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	41	0	0	43	43	50	-	-	-	T	24569343	C	T	24569343	2	4	346	1	0	0	0	0	0	0	0	1	11655	755	27	1		1	PCK2	14	24569343	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	748338	24569343	82780197	295	37912										
TGM1	0	genome.wustl.edu	37	chr14	24723363	24723363	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaggccagactcacccaacGttgaggatcttgggcctctg	12	12	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	24723363	24723363	G	A	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	silent	c.2220	p.N740	0.025	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	23	0	0	8	12	60	-	-	-	A	24723363	G	A	24723363	2	1	346	1	0	0	0	0	0	0	0	1	15924	1136	40	1		1	TGM1	14	24723363	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	154020	24723363	82626177	296	37913										
NFATC4	0	genome.wustl.edu	37	chr14	24845726	24845726	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccaccatcctacagaccgggCctgcggatgttccctgagac	10	16	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	24845726	24845726	C	A	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	silent	c.2472	p.G824	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	49	0	0	15	23	60.53	-	-	-	A	24845726	C	A	24845726	2	1	346	1	0	0	0	0	0	0	0	1	10437	726	26	4		4	NFATC4	14	24845726	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	122363	24845726	82503814	297	37914										
NYNRIN	0	genome.wustl.edu	37	chr14	24878311	24878311	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctggtagaccagatgggggGctgggaggagaagcagccct	19	8	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	24878311	24878311	G	C	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	silent	c.1311	p.G437	0.013	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	25	0	0	9	4	30.77	-	-	-	C	24878311	G	C	24878311	2	2	346	1	0	0	0	0	0	0	0	1	10869	1190	42	4		4	NYNRIN	14	24878311	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	32585	24878311	82471229	298	37915										
HECTD1	0	genome.wustl.edu	37	chr14	31642857	31642857	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgctgcgacctggtttgcaTgctgatgatggtcctgaaac	13	9	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	31642857	31642857	T	G	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	silent	c.759	p.A253	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	38	0	0	61	47	43.52	-	-	-	G	31642857	T	G	31642857	2	3	346	1	0	0	0	0	0	0	0	1	7090	1451	51	5		5	HECTD1	14	31642857	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	6764546	31642857	75706683	299	37916										
TXNDC16	0	genome.wustl.edu	37	chr14	52955155	52955155	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcatattattttccacatgaGatattattaaatcaacatca	3	7	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	52955155	52955155	G	A	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	missense	c.1034	p.S345F	0.996	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	71	0	0	108	83	43.46	-	-	-	A	52955155	G	A	52955155	3	1	346	1	0	0	0	0	1	0	0	0	16892	942	33	2	1483	2	TXNDC16	14	52955155	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	21312298	52955155	54394385	300	37917										
ADAM21	0	genome.wustl.edu	37	chr14	70924507	70924507	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acctacacagatgaccgtgcActcctggaggatcagctctt	9	13	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	70924507	70924507	A	C	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	silent	c.291	p.A97	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	86	0	0	49	42	46.15	-	-	-	C	70924507	A	C	70924507	2	2	346	1	0	0	0	0	0	0	0	1	243	146	6	5		5	ADAM21	14	70924507	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	17969352	70924507	36425033	301	37918										
DCAF4	0	genome.wustl.edu	37	chr14	73425681	73425681	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccgtgtggagatgctcaggaAagttatttgagttaaattgc	12	5	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	73425681	73425681	A	C	SNP	DCAF4	ENST00000555992	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.007	-	-	-	no_errors	DCAF4	HGNC	ENSG00000119599	22	0	0	0	5	100	-	-	-	C	73425681	A	C	73425681	1	2	346	0	1	0	0	0	0	0	0	0	4302	29	1	5		5	DCAF4	14	73425681	RNA	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	2501174	73425681	33923859	302	37919										
ITPK1	0	genome.wustl.edu	37	chr14	93412768	93412768	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgacacgcccagtgcctgcCgcagggcccgggagagctcc	15	16	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	93412768	93412768	C	A	SNP	ITPK1	ENST00000267615	human	ensembl	69_37n	-1	known	missense	c.809	p.R270L	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605	30	0	0	23	4	14.81	-	-	-	A	93412768	C	A	93412768	3	1	346	1	0	0	0	0	1	0	0	0	7970	652	23	3	491	3	ITPK1	14	93412768	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	19987087	93412768	13936772	303	37920										
ATG2B	0	genome.wustl.edu	37	chr14	96809561	96809561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aacttgtgagcaaaagcagtGggttgatgcacattaattcc	10	7	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	96809561	96809561	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	silent	c.639	p.P213	0.989	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	59	0	0	68	75	52.45	-	-	-	A	96809561	G	A	96809561	2	1	346	1	0	0	0	0	0	0	0	1	1098	1335	47	4		4	ATG2B	14	96809561	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3396793	96809561	10539979	304	37921										
HHIPL1	0	genome.wustl.edu	37	chr14	100118587	100118587	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcgccgtatgcagcccacctCtatgacgccgaggacccatt	9	16	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	100118587	100118587	C	T	SNP	HHIPL1	ENST00000330710	human	ensembl	69_37n	1	known	silent	c.282	p.L94	0.994	pfam_Folate_rcpt-like	pfam_Srcr_rcpt,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	HHIPL1	HGNC	ENSG00000182218	37	0	0	8	7	46.67	-	-	-	T	100118587	C	T	100118587	2	4	346	1	0	0	0	0	0	0	0	1	7144	900	32	2		2	HHIPL1	14	100118587	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	3309026	100118587	7230953	305	37922										
ASPG	0	genome.wustl.edu	37	chr14	104570688	104570688	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagggcgtggtcatggagacCttcggttcagggaacggacc	16	9	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	104570688	104570688	C	T	SNP	ASPG	ENST00000455920	human	ensembl	69_37n	1	known	silent	c.801	p.T267	0.997	pfam_Asparaginase/glutaminase,superfamily_Asparaginase/glutaminase,smart_Asparaginase/glutaminase,tigrfam_AsnASEI	pfam_Asparaginase/glutaminase,pfam_Ankyrin_rpt,superfamily_Asparaginase/glutaminase,superfamily_Ankyrin_rpt-contain_dom,smart_Asparaginase/glutaminase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Asparaginase/glutaminase,prints_Ankyrin_rpt,tigrfam_AsnASEI	-	no_errors	ASPG	HGNC	ENSG00000166183	25	0	0	6	4	40	-	-	-	T	104570688	C	T	104570688	2	4	346	1	0	0	0	0	0	0	0	1	1056	668	24	4		4	ASPG	14	104570688	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4452101	104570688	2778852	306	37923										
AHNAK2	0	genome.wustl.edu	37	chr14	105409445	105409445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagggacaggtccccctccaGctgcacaccatccagctttg	9	17	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	14	105409445	105409445	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.12343	p.L4115	0.019	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	127	0	0	48	28	36.84	-	-	-	A	105409445	G	A	105409445	2	1	346	1	0	0	0	0	0	0	0	1	415	962	34	4		4	AHNAK2	14	105409445	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	838757	105409445	1940095	307	37924										
OR4M2	0	genome.wustl.edu	37	chr15	22369290	22369290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgagaataccaacagggccAtgtccacctgctattcccac	8	14	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	22369290	22369290	A	G	SNP	OR4M2	ENST00000332663	human	ensembl	69_37n	1	known	missense	c.715	p.M239V	0.332	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974	99	0	0	315	342	52.05	-	-	-	G	22369290	A	G	22369290	3	3	346	1	0	0	0	0	1	0	0	0	11149	217	8	5	717	5	OR4M2	15	22369290	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		22369290	80162102	308	37925										
OR4N4	0	genome.wustl.edu	37	chr15	22382655	22382655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctcacagcccccctctatttAtttctgggcaacttggcctt	6	15	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	22382655	22382655	A	C	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	missense	c.183	p.L61F	0.988	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	179	0	0	511	78	13.22	-	-	-	C	22382655	A	C	22382655	3	2	346	1	0	0	0	0	1	0	0	0	11151	446	16	5	185	5	OR4N4	15	22382655	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	13365	22382655	80148737	309	37926										
OR4N4	0	genome.wustl.edu	37	chr15	22382728	22382728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccaggatgttggtggacttcCtctctgagaaaaaggtaatc	11	8	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	22382728	22382728	C	T	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	missense	c.256	p.L86F	0.784	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	59	0	0	314	46	12.78	-	-	-	T	22382728	C	T	22382728	3	4	346	1	0	0	0	0	1	0	0	0	11151	681	24	4	258	4	OR4N4	15	22382728	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	73	22382728	80148664	310	37927										
NIPA1	0	genome.wustl.edu	37	chr15	23060869	23060869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccaggaccgtggggaccgccGtgtaagccaggaagtttcca	14	12	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	23060869	23060869	G	A	SNP	NIPA1	ENST00000337435	human	ensembl	69_37n	-1	known	missense	c.263	p.T88M	0.998	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113	40	0	0	16	13	43.33	-	-	-	A	23060869	G	A	23060869	3	1	346	1	0	0	0	0	1	0	0	0	10494	1145	40	1	738	1	NIPA1	15	23060869	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	678141	23060869	79470523	311	37928										
HERC2	0	genome.wustl.edu	37	chr15	28478469	28478469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcagacctccttgtaagaacGgccctgttcttgatgagtct	10	11	2	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	28478469	28478469	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.4498	p.R1500C	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	43	0	0	44	52	54.17	-	-	-	A	28478469	G	A	28478469	3	1	346	1	0	0	0	0	1	0	0	0	7109	1116	39	1	10262	1	HERC2	15	28478469	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5417600	28478469	74052923	312	37929										
TJP1	0	genome.wustl.edu	37	chr15	30011017	30011017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggagtcaaggtcttgagagTgctgattatcaaaaggtggc	14	5	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	30011017	30011017	T	C	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	missense	c.3329	p.H1110R	0.990	NULL	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	160	0	0	77	88	52.69	-	-	-	C	30011017	T	C	30011017	3	2	346	1	0	0	0	0	1	0	0	0	16024	1696	59	5	1949	5	TJP1	15	30011017	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1532548	30011017	72520375	313	37930										
THBS1	0	genome.wustl.edu	37	chr15	39880382	39880382	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aaaccctgtgaaggcgaagcGcgggagaccaaagcctgcaa	13	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	39880382	39880382	G	A	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	silent	c.1434	p.A478	0.032	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	37	0	0	28	40	58.82	-	-	-	A	39880382	G	A	39880382	2	1	346	1	0	0	0	0	0	0	0	1	15948	1074	38	1		1	THBS1	15	39880382	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	9869365	39880382	62651010	314	37931										
EIF2AK4	0	genome.wustl.edu	37	chr15	40259951	40259951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caatgctctgccttataaaaCggggaagaaaggagatgttt	11	6	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	40259951	40259951	C	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.1424	p.T475M	0.980	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	142	0	0	62	53	46.09	-	-	-	T	40259951	C	T	40259951	3	4	346	1	0	0	0	0	1	0	0	0	5034	536	19	1	1458	1	EIF2AK4	15	40259951	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	379569	40259951	62271441	315	37932										
AKAP13	0	genome.wustl.edu	37	chr15	86124221	86124221	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atctcagctgactgtgccaaGgacaaagcacttcagctaag	9	11	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	86124221	86124221	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	silent	c.2922	p.K974	0.423	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	14	0	0	10	5	33.33	-	-	-	A	86124221	G	A	86124221	2	1	346	1	0	0	0	0	0	0	0	1	449	991	35	4		4	AKAP13	15	86124221	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	45864270	86124221	16407171	316	37933										
AEN	0	genome.wustl.edu	37	chr15	89172467	89172467	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgctcacagatccttaagcTcctgaagggcaaggtggtgg	13	10	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	89172467	89172467	T	A	SNP	AEN	ENST00000379231	human	ensembl	69_37n	1	known	missense	c.551	p.L184H	0.999	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026	21	0	0	7	12	63.16	-	-	-	A	89172467	T	A	89172467	3	1	346	1	0	0	0	0	1	0	0	0	351	1551	54	5	557	5	AEN	15	89172467	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3048246	89172467	13358925	317	37934										
FANCI	0	genome.wustl.edu	37	chr15	89838176	89838176	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaagccaccaagaaagcctTtctgttctcaggtccagcaa	7	13	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	89838176	89838176	T	G	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	silent	c.2487	p.L829	0.994	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	191	0	0	42	67	61.47	-	-	-	G	89838176	T	G	89838176	2	3	346	1	0	0	0	0	0	0	0	1	5715	1828	64	5		5	FANCI	15	89838176	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	665709	89838176	12693216	318	37935										
KIF7	0	genome.wustl.edu	37	chr15	90196008	90196008	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtggaagccaaagtgtcggtCacggcccagagtgacgcggc	16	11	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	90196008	90196008	C	T	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.154	p.D52N	0.559	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	35	0	0	9	5	35.71	-	-	-	T	90196008	C	T	90196008	3	4	346	1	0	0	0	0	1	0	0	0	8361	826	29	2	3949	2	KIF7	15	90196008	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	357832	90196008	12335384	319	37936										
ANPEP	0	genome.wustl.edu	37	chr15	90333768	90333770	+	In_Frame_Del	DEL	CAT	CAT	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaaggagaacgagccaccacCataactgcagggagggagag							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	15	90333768	90333770	CAT	-	DEL	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	in_frame_del	c.2674_2672	p.YG891in_frame_delC	0.998:0.814:0.906	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	42	0	0	30	21	40.38	-	-	-	-	90333770	CAT	-	90333768	7	5	346	1	0	1	0	1	0	0	0	0	709	594	21	0	237	0	ANPEP	15	90333768	In_Frame_Del	DEL	CAT	TCGA-AO-A12E-01A-11D-A10M-09	137760	90333768	12197624	320	37937										
CRAMP1L	0	genome.wustl.edu	37	chr16	1720699	1720699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccagagaagagccggaagatGttgccgactcccattgggac	13	11	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	1720699	1720699	G	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.3534	p.M1178I	0.999	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	90	0	0	65	38	36.89	-	-	-	T	1720699	G	T	1720699	3	4	346	1	0	0	0	0	1	0	0	0	3876	1377	48	4	3608	4	CRAMP1L	16	1720699	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09		1720699	88634054	321	37938										
SRRM2	0	genome.wustl.edu	37	chr16	2813183	2813183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccctgagttgaaatctaggaCcccttctagacatagctgct	8	12	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	2813183	2813183	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.2654	p.T885I	0.998	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	109	0	0	33	61	64.89	-	-	-	T	2813183	C	T	2813183	3	4	346	1	0	0	0	0	1	0	0	0	15260	507	18	4	2692	4	SRRM2	16	2813183	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1092484	2813183	87541570	322	37939										
SMG1	0	genome.wustl.edu	37	chr16	18872050	18872050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctcctggtaacaattctaaCtgctcggtacattcaacaaa	5	11	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	18872050	18872050	C	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.3744	p.Q1248	0.981	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	49	0	0	87	84	49.12	-	-	-	T	18872050	C	T	18872050	2	4	346	1	0	0	0	0	0	0	0	1	14884	564	20	4		4	SMG1	16	18872050	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	16058867	18872050	71482703	323	37940										
DNAH3	0	genome.wustl.edu	37	chr16	20976176	20976176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgataatccactgtaaaagcGcccaggtaagccacagttcc	8	13	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	20976176	20976176	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.9030	p.G3010	0.283	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	58	0	0	49	51	51	-	-	-	A	20976176	G	A	20976176	2	1	346	1	0	0	0	0	0	0	0	1	4639	1074	38	1		1	DNAH3	16	20976176	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2104126	20976176	69378577	324	37941										
NPIPL3	0	genome.wustl.edu	37	chr16	21416115	21416115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgtcttgagattatcatccGctgagggtggaaggggatgg	17	5	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	21416115	21416115	G	A	SNP	NPIPL3	ENST00000447737	human	ensembl	69_37n	-1	known	missense	c.776	p.A259V	0.114	pfam_NPIP	pfam_NPIP	-	no_errors	NPIPL3	HGNC	ENSG00000169246	29	0	0	20	12	37.5	-	-	-	A	21416115	G	A	21416115	3	1	346	1	0	0	0	0	1	0	0	0	10657	1087	38	1	2269	1	NPIPL3	16	21416115	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	439939	21416115	68938638	325	37942										
ITGAD	0	genome.wustl.edu	37	chr16	31437373	31437373	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccactacaaggaaatgctggAggacaagcctgaagacactg	11	10	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	31437373	31437373	A	T	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	1	known	missense	c.3410	p.E1137V	0.000	pfam_Integrin_alpha_C_CS	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886	239	0	0	83	48	36.36	-	-	-	T	31437373	A	T	31437373	3	4	346	1	0	0	0	0	1	0	0	0	7938	304	11	5	3528	5	ITGAD	16	31437373	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	10021258	31437373	58917380	326	37943										
ADCY7	0	genome.wustl.edu	37	chr16	50348998	50348998	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tatgacatctggggaaacacTgtcaatgtggccagccgaat	11	9	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	50348998	50348998	T	C	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	silent	c.3045	p.T1015	0.011	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	68	0	0	39	30	43.48	-	-	-	C	50348998	T	C	50348998	2	2	346	1	0	0	0	0	0	0	0	1	299	1567	55	5		5	ADCY7	16	50348998	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	18911625	50348998	40005755	327	37944										
CMTM3	0	genome.wustl.edu	37	chr16	66643903	66643903	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaccacagcccacaagacaGaaggtaagcggctgccctga	11	13	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	66643903	66643903	G	C	SNP	CMTM3	ENST00000361909	human	ensembl	69_37n	1	known	missense	c.517	p.E173Q	1.000	NULL	pfam_MARVEL-like_dom	-	no_errors	CMTM3	HGNC	ENSG00000140931	132	0	0	19	42	68.85	-	-	-	C	66643903	G	C	66643903	3	2	346	1	0	0	0	0	1	0	0	0	3614	943	33	2	531	2	CMTM3	16	66643903	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	16294905	66643903	23710850	328	37945										
RLTPR	0	genome.wustl.edu	37	chr16	67683980	67683980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgtctcttgaggaacaaccGcgcagaccctgcctcttctg	9	15	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	67683980	67683980	G	A	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	missense	c.2111	p.R704H	0.025	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	158	0	0	30	16	34.78	-	-	-	A	67683980	G	A	67683980	3	1	346	1	0	0	0	0	1	0	0	0	13480	1087	38	1	2197	1	RLTPR	16	67683980	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1040077	67683980	22670773	329	37946										
PSKH1	0	genome.wustl.edu	37	chr16	67943554	67943554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catgccgtttgaggatgacaAccgtacccggctgtaccggc	12	13	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	67943554	67943554	A	G	SNP	PSKH1	ENST00000291041	human	ensembl	69_37n	1	known	missense	c.902	p.N301S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792	25	0	0	10	13	56.52	-	-	-	G	67943554	A	G	67943554	3	3	346	1	0	0	0	0	1	0	0	0	12744	43	2	5	904	5	PSKH1	16	67943554	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	259574	67943554	22411199	330	37947										
CLEC18A	0	genome.wustl.edu	37	chr16	69988472	69988472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgccacctgcacccactacaCgcaggtgagtgtgctgcagg	12	15	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	69988472	69988472	C	T	SNP	CLEC18A	ENST00000449317	human	ensembl	69_37n	1	known	missense	c.452	p.T151M	0.998	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322	29	0	0	19	10	34.48	-	-	-	T	69988472	C	T	69988472	3	4	346	1	0	0	0	0	1	0	0	0	3532	536	19	1	462	1	CLEC18A	16	69988472	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2044918	69988472	20366281	331	37948										
HYDIN	0	genome.wustl.edu	37	chr16	70989311	70989311	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttccttcacggactgctctaTggcagccctgatgcagagct	10	13	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	70989311	70989311	T	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6280	p.I2094V	0.978	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	16	0	0	24	22	47.83	-	-	-	C	70989311	T	C	70989311	3	2	346	1	0	0	0	0	1	0	0	0	7521	1464	51	5	9270	5	HYDIN	16	70989311	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1000839	70989311	19365442	332	37949										
HYDIN	0	genome.wustl.edu	37	chr16	71163693	71163693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcaaaaaactcatcagtctcAtccttctcctctttgatcag	3	13	7	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	71163693	71163693	A	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.1077	p.D359	0.002	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	56	0	0	64	29	31.18	-	-	-	G	71163693	A	G	71163693	2	3	346	1	0	0	0	0	0	0	0	1	7521	214	8	5		5	HYDIN	16	71163693	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	174382	71163693	19191060	333	37950										
CLEC18B	0	genome.wustl.edu	37	chr16	74447514	74447514	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gacaaaggcttctatcgctgTctggcctgcagagcacaggt	12	11	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	74447514	74447514	T	C	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	missense	c.517	p.T173A	0.001	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	231	2	0.86	59	30	33.71	-	-	-	C	74447514	T	C	74447514	3	2	346	1	0	0	0	0	1	0	0	0	3533	1667	58	5	890	5	CLEC18B	16	74447514	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3283821	74447514	15907239	334	37951										
CNTNAP4	0	genome.wustl.edu	37	chr16	76573644	76573644	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagatcaggtacaagttaaaTaaatatcaagagcctgatgt	8	6	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	76573644	76573644	T	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	missense	c.3246	p.N1082K	0.249	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	77	0	0	71	38	34.55	-	-	-	A	76573644	T	A	76573644	3	1	346	1	0	0	0	0	1	0	0	0	3679	1403	49	5	3340	5	CNTNAP4	16	76573644	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	2126130	76573644	13781109	335	37952										
PKD1L2	0	genome.wustl.edu	37	chr16	81208198	81208198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agagggaggtggtgtcagccGcttgggagacaccacaggtt	17	8	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	81208198	81208198	G	A	SNP	PKD1L2	ENST00000527937	human	ensembl	69_37n	-1	known	missense	c.673	p.R225W	0.000	pfscan_REJ-like	superfamily_Coatomer/clathrin_app_Ig-like,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	12	0	0	0	12	100	-	-	-	A	81208198	G	A	81208198	3	1	346	1	0	0	0	0	1	0	0	0	12039	1102	38	1		1	PKD1L2	16	81208198	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	4634554	81208198	9146555	336	37953										
CPNE7	0	genome.wustl.edu	37	chr16	89644040	89644040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tcgaggaggtgcagaggctgCgctttgaggtgtacgacacg	17	8	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	16	89644040	89644040	C	T	SNP	CPNE7	ENST00000268720	human	ensembl	69_37n	1	known	missense	c.268	p.R90C	0.996	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE7	HGNC	ENSG00000178773	113	0	0	20	11	35.48	-	-	-	T	89644040	C	T	89644040	3	4	346	1	0	0	0	0	1	0	0	0	3847	768	27	1	274	1	CPNE7	16	89644040	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	8435842	89644040	710713	337	37954										
OR1A1	0	genome.wustl.edu	37	chr17	3119219	3119219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gggatgcctaacgcagatgtAtttcatgatagccttgggta	12	7	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	3119219	3119219	A	G	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	missense	c.305	p.Y102C	0.984	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	100	0	0	85	111	56.63	-	-	-	G	3119219	A	G	3119219	3	3	346	1	0	0	0	0	1	0	0	0	11022	449	16	5	307	5	OR1A1	17	3119219	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		3119219	78075991	338	37955										
OR3A3	0	genome.wustl.edu	37	chr17	3324004	3324004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctttgcctatctggtcacaaCtgggggcaacctcagcatcc	9	14	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	3324004	3324004	C	T	SNP	OR3A3	ENST00000291231	human	ensembl	69_37n	1	known	missense	c.143	p.T48I	0.002	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A3	HGNC	ENSG00000159961	25	0	0	6	13	68.42	-	-	-	T	3324004	C	T	3324004	3	4	346	1	0	0	0	0	1	0	0	0	11112	565	20	4	145	4	OR3A3	17	3324004	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	204785	3324004	77871206	339	37956										
ZZEF1	0	genome.wustl.edu	37	chr17	4017735	4017735	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgacttgagtttatccatctCtggacttctagttagatctc	7	9	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	4017735	4017735	C	G	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.724	p.E242Q	1.000	superfamily_Galactose-bd-like	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	52	0	0	91	137	60.09	-	-	-	G	4017735	C	G	4017735	3	3	346	1	0	0	0	0	1	0	0	0	18346	922	32	2	8369	2	ZZEF1	17	4017735	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	693731	4017735	77177475	340	37957										
ZNF594	0	genome.wustl.edu	37	chr17	5086244	5086244	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cccctaaaagatttcccacaTttgctacatacacaaggttt	4	12	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	5086244	5086244	T	C	SNP	ZNF594	ENST00000399604	human	ensembl	69_37n	-1	known	silent	c.1308	p.K436	0.038	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626	149	0	0	186	108	36.73	-	-	-	C	5086244	T	C	5086244	2	2	346	1	0	0	0	0	0	0	0	1	18120	1490	52	5		5	ZNF594	17	5086244	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1068509	5086244	76108966	341	37958										
NUP88	0	genome.wustl.edu	37	chr17	5322709	5322709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcgggctcttcgccgccgcCgctggggccccgaaggcgaa	17	16	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	5322709	5322709	C	T	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.262	p.G88S	0.006	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	8	0	0	8	9	52.94	-	-	-	T	5322709	C	T	5322709	3	4	346	1	0	0	0	0	1	0	0	0	10844	652	23	1	2031	1	NUP88	17	5322709	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	236465	5322709	75872501	342	37959										
GPS2	0	genome.wustl.edu	37	chr17	7216540	7216540	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gccatactcactgagtcggaGaagccagtctgctggttagc	12	11	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	7216540	7216540	G	A	SNP	GPS2	ENST00000570780	human	ensembl	69_37n	-1	putative	missense	c.866	p.S289F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPS2	HGNC	ENSG00000132522	164	0	0	34	11	24.44	-	-	-	A	7216540	G	A	7216540	3	1	346	1	0	0	0	0	1	0	0	0	6784	933	33	2	200	2	GPS2	17	7216540	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1893831	7216540	73978670	343	37960										
DRG2	0	genome.wustl.edu	37	chr17	18002987	18002987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgatcgctgtggcgcgcacGgctgacgtcatcatcatgat	13	11	3	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	18002987	18002987	G	A	SNP	DRG2	ENST00000225729	human	ensembl	69_37n	1	known	silent	c.417	p.T139	0.026	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591	20	0	0	7	9	56.25	-	-	-	A	18002987	G	A	18002987	2	1	346	1	0	0	0	0	0	0	0	1	4797	1103	39	1		1	DRG2	17	18002987	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	10786447	18002987	63192223	344	37961										
FBXW10	0	genome.wustl.edu	37	chr17	18661706	18661706	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tccatcttctggacatcataCaagtgaaagcgatacccgtt	7	11	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	18661706	18661706	C	T	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	1	known	nonsense	c.1408	p.Q470*	0.001	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW10	HGNC	ENSG00000171931	36	0	0	46	50	52.08	-	-	-	T	18661706	C	T	18661706	4	4	346	1	0	0	0	0	0	1	0	0	5809	479	17	4	1347	4	FBXW10	17	18661706	Nonsense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	658719	18661706	62533504	345	37962										
MAPK7	0	genome.wustl.edu	37	chr17	19284835	19284835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggagtctccaccaccagcccCgccaccatgccccggccctg	9	22	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	19284835	19284835	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	69_37n	1	known	missense	c.1313	p.P438L	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484	43	0	0	14	41	74.55	-	-	-	T	19284835	C	T	19284835	3	4	346	1	0	0	0	0	1	0	0	0	9353	652	23	1	1323	1	MAPK7	17	19284835	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	623129	19284835	61910375	346	37963										
LRRC37B	0	genome.wustl.edu	37	chr17	30372739	30372739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gatcttacctagccatatggCctgctgcctctgccaattta	7	13	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	30372739	30372739	C	T	SNP	LRRC37B	ENST00000341671	human	ensembl	69_37n	1	known	missense	c.2144	p.A715V	0.876	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	148	0	0	555	161	22.49	-	-	-	T	30372739	C	T	30372739	3	4	346	1	0	0	0	0	1	0	0	0	9060	739	26	4	2174	4	LRRC37B	17	30372739	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	11087904	30372739	50822471	347	37964										
TMEM132E	0	genome.wustl.edu	37	chr17	32963145	32963145	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agcctggccctctccctgcgGcccagccctgggagcagcca	12	19	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	32963145	32963145	G	T	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	1	known	silent	c.1827	p.R609	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	15	0	0	5	9	64.29	-	-	-	T	32963145	G	T	32963145	2	4	346	1	0	0	0	0	0	0	0	1	16143	1190	42	4		4	TMEM132E	17	32963145	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2590406	32963145	48232065	348	37965										
SLFN12	0	genome.wustl.edu	37	chr17	33738553	33738553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	attcagggtaaattacttgcGaccttaaatcatactggcag	8	8	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	33738553	33738553	G	A	SNP	SLFN12	ENST00000304905	human	ensembl	69_37n	-1	known	missense	c.1541	p.S514L	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123	78	0	0	166	87	34.25	-	-	-	A	33738553	G	A	33738553	3	1	346	1	0	0	0	0	1	0	0	0	14823	1059	37	1	199	1	SLFN12	17	33738553	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	775408	33738553	47456657	349	37966										
GAS2L2	0	genome.wustl.edu	37	chr17	34072870	34072870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccacagagcagtccccatgcGtggacccagccaggtccaca	10	17	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	34072870	34072870	G	A	SNP	GAS2L2	ENST00000254466	human	ensembl	69_37n	-1	known	missense	c.1646	p.T549M	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139	34	0	0	12	11	47.83	-	-	-	A	34072870	G	A	34072870	3	1	346	1	0	0	0	0	1	0	0	0	6297	1145	40	1	1000	1	GAS2L2	17	34072870	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	334317	34072870	47122340	350	37967										
GPR179	0	genome.wustl.edu	37	chr17	36484393	36484393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacatccaaagggcaaatgtCggcagctttgcttcccacac	8	14	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	36484393	36484393	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.5059	p.D1687N	0.186	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	84	0	0	33	57	63.33	-	-	-	T	36484393	C	T	36484393	3	4	346	1	0	0	0	0	1	0	0	0	6724	884	31	1	2048	1	GPR179	17	36484393	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2411523	36484393	44710817	351	37968										
PSMD3	0	genome.wustl.edu	37	chr17	38145029	38145029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaagtgttactattatcacGcccgggtctatgagttcctg	9	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	38145029	38145029	G	T	SNP	PSMD3	ENST00000264639	human	ensembl	69_37n	1	known	missense	c.643	p.A215S	0.978	NULL	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	53	0	0	88	19	17.59	-	-	-	T	38145029	G	T	38145029	3	4	346	1	0	0	0	0	1	0	0	0	12779	1087	38	3	657	3	PSMD3	17	38145029	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1660636	38145029	43050181	352	37969										
KRTAP17-1	0	genome.wustl.edu	37	chr17	39471778	39471778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgcagccagagcccccgcagCcagagcccccacagccacag	10	21	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	39471778	39471778	C	T	SNP	KRTAP17-1	ENST00000334202	human	ensembl	69_37n	-1	known	missense	c.125	p.G42D	0.643	NULL	NULL	-	no_errors	KRTAP17-1	HGNC	ENSG00000186860	25	0	0	21	11	34.38	-	-	-	T	39471778	C	T	39471778	3	4	346	1	0	0	0	0	1	0	0	0	8580	739	26	4	196	4	KRTAP17-1	17	39471778	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1326749	39471778	41723432	353	37970										
KRT35	0	genome.wustl.edu	37	chr17	39637292	39637292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agtggagcccccactggcccCtcctgggctcttgagagacc	12	16	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	39637292	39637292	C	T	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	missense	c.58	p.G20R	0.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	12	0	0	13	15	53.57	-	-	-	T	39637292	C	T	39637292	3	4	346	1	0	0	0	0	1	0	0	0	8525	681	24	4	1337	4	KRT35	17	39637292	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	165514	39637292	41557918	354	37971										
AOC2	0	genome.wustl.edu	37	chr17	40997785	40997785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgactcgctatttggataGcagctttggactcggccgta	12	10	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	40997785	40997785	G	A	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.1142	p.S381N	0.912	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	18	0	0	29	45	60	-	-	-	A	40997785	G	A	40997785	3	1	346	1	0	0	0	0	1	0	0	0	728	971	34	4	1144	4	AOC2	17	40997785	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1360493	40997785	40197425	355	37972										
PYY	0	genome.wustl.edu	37	chr17	42030476	42030476	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtggtaacgggcgcttttaCcgcgacctgacggggcggtc	16	11	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	42030476	42030476	C	T	SNP	PYY	ENST00000360085	human	ensembl	69_37n	-1	known	splice_site	c.269+1	e2+1	0.312	-	-	-	no_errors	PYY	HGNC	ENSG00000131096	24	0	0	9	22	70.97	-	-	-	T	42030476	C	T	42030476	5	4	346	1	0	0	0	0	0	0	1	0	12951	521	18	4	31	4	PYY	17	42030476	Splice_Site	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1032691	42030476	39164734	356	37973										
SGCA	0	genome.wustl.edu	37	chr17	48246600	48246600	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccccacttccgcgttgactgGtgcaatgtgaccctggtgag	12	13	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	48246600	48246600	G	A	SNP	SGCA	ENST00000262018	human	ensembl	69_37n	1	known	nonsense	c.732	p.W244*	1.000	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823	41	0	0	32	20	38.46	-	-	-	A	48246600	G	A	48246600	4	1	346	1	0	0	0	0	0	1	0	0	14287	1270	44	4	754	4	SGCA	17	48246600	Nonsense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	6216124	48246600	32948610	357	37974										
ABCC3	0	genome.wustl.edu	37	chr17	48755388	48755388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agggtccttgtccctcctttCccctaagcagaaaactggcc	8	15	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	48755388	48755388	C	T	SNP	ABCC3	ENST00000505699	human	ensembl	69_37n	1	known	missense	c.3662	p.S1221F	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	41	0	0	32	25	43.86	-	-	-	T	48755388	C	T	48755388	3	4	346	1	0	0	0	0	1	0	0	0	54	870	30	2		2	ABCC3	17	48755388	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	508788	48755388	32439822	358	37975										
ANKRD40	0	genome.wustl.edu	37	chr17	48777151	48777151	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtgggtgtatagataaaaggGaaggctgggttggccaaata	16	3	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	48777151	48777151	G	A	SNP	ANKRD40	ENST00000285243	human	ensembl	69_37n	-1	known	silent	c.387	p.F129	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	148	0	0	40	31	43.66	-	-	-	A	48777151	G	A	48777151	2	1	346	1	0	0	0	0	0	0	0	1	668	1165	41	2		2	ANKRD40	17	48777151	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	21763	48777151	32418059	359	37976										
LRRC37A3	0	genome.wustl.edu	37	chr17	62856783	62856783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gactctattcagtctctgccGgtttttgcctacagtttgaa	8	10	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	62856783	62856783	G	A	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.3481	p.R1161W	0.004	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	135	0	0	62	38	38	-	-	-	A	62856783	G	A	62856783	3	1	346	1	0	0	0	0	1	0	0	0	9059	1115	39	1	1439	1	LRRC37A3	17	62856783	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	14079632	62856783	18338427	360	37977										
SLC16A6	0	genome.wustl.edu	37	chr17	66265367	66265367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttgtttcacctgagtgatgaTgctggcacagtcccatctta	9	10	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	66265367	66265367	T	C	SNP	SLC16A6	ENST00000327268	human	ensembl	69_37n	-1	known	missense	c.1442	p.H481R	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	19	0	0	0	33	100	-	-	-	C	66265367	T	C	66265367	3	2	346	1	0	0	0	0	1	0	0	0	14501	1464	51	5	133	5	SLC16A6	17	66265367	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3408584	66265367	14929843	361	37978										
ZACN	0	genome.wustl.edu	37	chr17	74076642	74076642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gacagaaggcgaactcccagGtctgtgttcagagcagtcta	12	10	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	74076642	74076642	G	A	SNP	ZACN	ENST00000425015	human	ensembl	69_37n	1	known	silent	c.681	p.R227	0.039	NULL	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	-	no_errors	ZACN	HGNC	ENSG00000186919	9	0	0	0	11	100	-	-	-	A	74076642	G	A	74076642	2	1	346	1	0	0	0	0	0	0	0	1	17607	1276	44	4		4	ZACN	17	74076642	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	7811275	74076642	7118568	362	37979										
MGAT5B	0	genome.wustl.edu	37	chr17	74944009	74944009	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacccacctcgagtgggctcGgaacaccagcttggctcctg	11	16	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	74944009	74944009	G	C	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.2048	p.R683P	0.031	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	13	0	0	10	5	33.33	-	-	-	C	74944009	G	C	74944009	3	2	346	1	0	0	0	0	1	0	0	0	9620	1116	39	3	2178	3	MGAT5B	17	74944009	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	867367	74944009	6251201	363	37980										
BIRC5	0	genome.wustl.edu	37	chr17	76219783	76219783	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tagatgtttcaactgtgctcTtgttttgtcttgaaagtggc	10	6	3	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	76219783	76219783	T	C	SNP	BIRC5	ENST00000589892	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BIRC5	HGNC	ENSG00000089685	37	0	0	10	23	69.7	-	-	-	C	76219783	T	C	76219783	1	2	346	0	1	0	0	0	0	0	0	0	1442	1624	56	5		5	BIRC5	17	76219783	RNA	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	1275774	76219783	4975427	364	37981										
AATK	0	genome.wustl.edu	37	chr17	79139481	79139481	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggccctccgtgccccagttaCctgtgccctggaggcagcca	12	17	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	79139481	79139481	C	G	SNP	AATK	ENST00000572798	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.504	-	-	-	no_errors	AATK	HGNC	ENSG00000181409	34	0	0	6	10	62.5	-	-	-	G	79139481	C	G	79139481	5	3	346	1	0	0	0	0	0	0	1	0	26	522	18	4		4	AATK	17	79139481	Splice_Site	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2919698	79139481	2055729	365	37982										
RFNG	0	genome.wustl.edu	37	chr17	80007805	80007805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cccactcacctggcccatggGctcatcttgagggcaaggcc	11	16	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	80007805	80007805	G	C	SNP	RFNG	ENST00000310496	human	ensembl	69_37n	-1	known	missense	c.651	p.S217R	0.999	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	RFNG	HGNC	ENSG00000169733	53	0	0	12	9	42.86	-	-	-	C	80007805	G	C	80007805	3	2	346	1	0	0	0	0	1	0	0	0	13335	1194	42	4	360	4	RFNG	17	80007805	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	868324	80007805	1187405	366	37983										
ZNF750	0	genome.wustl.edu	37	chr17	80788620	80788620	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gggttcgtgggtggctgccaGgtttatctctgatttcttgg	15	7	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	17	80788620	80788620	G	A	SNP	ZNF750	ENST00000269394	human	ensembl	69_37n	-1	known	silent	c.1570	p.L524	0.000	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579	25	0	0	9	17	65.38	-	-	-	A	80788620	G	A	80788620	2	1	346	1	0	0	0	0	0	0	0	1	18226	991	35	4		4	ZNF750	17	80788620	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	780815	80788620	406590	367	37984										
SMCHD1	0	genome.wustl.edu	37	chr18	2666869	2666869	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	attttcactcttgattacagAtgaaactgttaaagatggag	8	5	2	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	18	2666869	2666869	A	G	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.263	p.D88G	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	90	0	0	34	61	64.21	-	-	-	G	2666869	A	G	2666869	3	3	346	1	0	0	0	0	1	0	0	0	14877	347	12	5	273	5	SMCHD1	18	2666869	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		2666869	75410379	368	37985										
EPB41L3	0	genome.wustl.edu	37	chr18	5396207	5396207	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagaatatctcacctgtgatGattcatatgtgatggttttg	9	6	2	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	18	5396207	5396207	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	missense	c.2966	p.S989L	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	90	0	0	143	78	35.29	-	-	-	A	5396207	G	A	5396207	3	1	346	1	0	0	0	0	1	0	0	0	5191	1294	45	2	313	2	EPB41L3	18	5396207	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2729338	5396207	72681041	369	37986										
ZNF397	0	genome.wustl.edu	37	chr18	32826159	32826159	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caaaaggagctcagcccttgTtcagcatcagagaattcatt	8	10	4	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	18	32826159	32826159	T	A	SNP	ZNF397	ENST00000330501	human	ensembl	69_37n	1	known	missense	c.1490	p.V497D	0.026	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	103	1	0.96	98	40	28.99	-	-	-	A	32826159	T	A	32826159	3	1	346	1	0	0	0	0	1	0	0	0	17979	1725	60	5	1500	5	ZNF397	18	32826159	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	27429952	32826159	45251089	370	37987										
MADCAM1	0	genome.wustl.edu	37	chr19	501805	501805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccggagcctcccgacaagacCtccccggagcccgcccccca	9	23	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	501805	501805	C	T	SNP	MADCAM1	ENST00000215637	human	ensembl	69_37n	1	known	silent	c.804	p.T268	0.065	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like	-	no_errors	MADCAM1	HGNC	ENSG00000099866	81	0	0	18	16	45.71	-	-	-	T	501805	C	T	501805	2	4	346	1	0	0	0	0	0	0	0	1	9218	668	24	4		4	MADCAM1	19	501805	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		501805	58627178	371	37988										
NDUFS7	0	genome.wustl.edu	37	chr19	1388867	1388867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gccaaaggccagagccgtggCtcccaaacccagcagccggg	13	16	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	1388867	1388867	C	T	SNP	NDUFS7	ENST00000233627	human	ensembl	69_37n	1	known	missense	c.158	p.A53V	0.969	NULL	pfam_NADH_UbQ_OxRdtase-like_20kDa,tigrfam_NADH_UQ_OxRdtase_20Kd_su	-	no_errors	NDUFS7	HGNC	ENSG00000115286	23	0	0	3	8	72.73	-	-	-	T	1388867	C	T	1388867	3	4	346	1	0	0	0	0	1	0	0	0	10369	797	28	4	172	4	NDUFS7	19	1388867	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	887062	1388867	57740116	372	37989										
REXO1	0	genome.wustl.edu	37	chr19	1825928	1825930	+	In_Frame_Del	DEL	CTC	CTC	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agccccttctcctcactcttCtcttccttggggggctaaga							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	1825928	1825930	CTC	-	DEL	REXO1	ENST00000170168	human	ensembl	69_37n	-1	known	in_frame_del	c.1926_1924	p.E642in_frame_del	0.219:0.273:0.268	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	83	0	0	0	54	93.1	-	-	-	-	1825930	CTC	-	1825928	7	5	346	1	0	1	0	1	0	0	0	0	13324	912	32	0	1795	0	REXO1	19	1825928	In_Frame_Del	DEL	CTC	TCGA-AO-A12E-01A-11D-A10M-09	437061	1825928	57303055	373	37990										
NCLN	0	genome.wustl.edu	37	chr19	3196207	3196207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgcgcacggccactgccaacGgcttccagatggtcaccagc	11	16	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	3196207	3196207	G	A	SNP	NCLN	ENST00000246117	human	ensembl	69_37n	1	known	missense	c.547	p.G183S	1.000	pirsf_Nicalin	pfam_Peptidase_M28,pfam_Nicastrin,pirsf_Nicalin	-	no_errors	NCLN	HGNC	ENSG00000125912	21	0	0	4	9	64.29	-	-	-	A	3196207	G	A	3196207	3	1	346	1	0	0	0	0	1	0	0	0	10299	1116	39	1	561	1	NCLN	19	3196207	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1370279	3196207	55932776	374	37991										
APBA3	0	genome.wustl.edu	37	chr19	3751444	3751444	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcctcacgatgccgtcctcCacgcagaagcccagctgctc	10	18	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	3751444	3751444	C	T	SNP	APBA3	ENST00000316757	human	ensembl	69_37n	-1	known	silent	c.1503	p.V501	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA3	HGNC	ENSG00000011132	22	0	0	6	6	50	-	-	-	T	3751444	C	T	3751444	2	4	346	1	0	0	0	0	0	0	0	1	759	581	21	4		4	APBA3	19	3751444	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	555237	3751444	55377539	375	37992										
SLC25A23	0	genome.wustl.edu	37	chr19	6454366	6454366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catgaacttgatagctgactCgggggcaatcttgagtacat	11	8	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	6454366	6454366	C	T	SNP	SLC25A23	ENST00000264088	human	ensembl	69_37n	-1	known	missense	c.904	p.E302K	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A23	HGNC	ENSG00000125648	66	0	0	29	19	39.58	-	-	-	T	6454366	C	T	6454366	3	4	346	1	0	0	0	0	1	0	0	0	14575	893	31	1	663	1	SLC25A23	19	6454366	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2702922	6454366	52674617	376	37993										
TRIP10	0	genome.wustl.edu	37	chr19	6750386	6750386	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcccggcctcccgaccccccCgctagcgccccgccagacag	10	24	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	6750386	6750386	C	A	SNP	TRIP10	ENST00000313244	human	ensembl	69_37n	1	known	silent	c.1479	p.P493	0.001	NULL	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	82	0	0	8	13	61.9	-	-	-	A	6750386	C	A	6750386	2	1	346	1	0	0	0	0	0	0	0	1	16650	639	23	3		3	TRIP10	19	6750386	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	296020	6750386	52378597	377	37994										
LRRC8E	0	genome.wustl.edu	37	chr19	7964037	7964037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gagaaagtgctggcggaaccGgagaaggtggtgaccgagcc	18	8	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	7964037	7964037	G	A	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	1	known	silent	c.630	p.P210	0.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	111	0	0	19	24	54.55	-	-	-	A	7964037	G	A	7964037	2	1	346	1	0	0	0	0	0	0	0	1	9091	1103	39	1		1	LRRC8E	19	7964037	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1213651	7964037	51164946	378	37995										
QTRT1	0	genome.wustl.edu	37	chr19	10822936	10822936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggtggcgctgagcacctctcGgctgccgaaggacaagcccc	14	15	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	10822936	10822936	G	A	SNP	QTRT1	ENST00000250237	human	ensembl	69_37n	1	known	missense	c.746	p.R249Q	0.992	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans	-	no_errors	QTRT1	HGNC	ENSG00000213339	34	0	0	8	17	68	-	-	-	A	10822936	G	A	10822936	3	1	346	1	0	0	0	0	1	0	0	0	12968	1116	39	1	768	1	QTRT1	19	10822936	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2858899	10822936	48306047	379	37996										
SSBP4	0	genome.wustl.edu	37	chr19	18541704	18541704	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agtatggccccaggtgacacAatggccgcaggctccatggc	13	13	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	18541704	18541704	A	C	SNP	SSBP4	ENST00000270061	human	ensembl	69_37n	1	known	silent	c.333	p.T111	0.989	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP4	HGNC	ENSG00000130511	25	0	0	5	5	50	-	-	-	C	18541704	A	C	18541704	2	2	346	1	0	0	0	0	0	0	0	1	15273	117	5	5		5	SSBP4	19	18541704	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	7718768	18541704	40587279	380	37997										
ZNF682	0	genome.wustl.edu	37	chr19	20117675	20117675	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtttagtaaggtatgagaaCcacttaaaggttttgccaca	9	6	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	20117675	20117675	C	T	SNP	ZNF682	ENST00000397165	human	ensembl	69_37n	-1	known	nonsense	c.636	p.W212*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124	69	0	0	81	75	48.08	-	-	-	T	20117675	C	T	20117675	4	4	346	1	0	0	0	0	0	1	0	0	18185	508	18	4	864	4	ZNF682	19	20117675	Nonsense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1575971	20117675	39011308	381	37998										
ZNF492	0	genome.wustl.edu	37	chr19	22848028	22848028	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcttgtgacaacattgcaaaGatttccaaatataaaagaaa	6	6	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	22848028	22848028	G	C	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	missense	c.1557	p.K519N	0.007	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	39	0	0	109	90	45.23	-	-	-	C	22848028	G	C	22848028	3	2	346	1	0	0	0	0	1	0	0	0	18039	933	33	2	1567	2	ZNF492	19	22848028	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2730353	22848028	36280955	382	37999										
FFAR3	0	genome.wustl.edu	37	chr19	35850022	35850022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccgcatggtggaggcagccaAtggcatgcactggcccctgc	14	14	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	35850022	35850022	A	G	SNP	FFAR3	ENST00000327809	human	ensembl	69_37n	1	known	missense	c.230	p.N77S	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR40-rel_recept	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept	-	no_errors	FFAR3	HGNC	ENSG00000185897	31	0	0	42	22	34.38	-	-	-	G	35850022	A	G	35850022	3	3	346	1	0	0	0	0	1	0	0	0	5875	101	4	5	232	5	FFAR3	19	35850022	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	13001994	35850022	23278961	383	38000			1	65		3	3	271	N	G_A	7.185466e-06
FFAR3	0	genome.wustl.edu	37	chr19	35850152	35850152	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttcctgagtgtggcccacccActgtggtacaagacccggcc	11	15	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	35850152	35850152	A	C	SNP	FFAR3	ENST00000327809	human	ensembl	69_37n	1	known	silent	c.360	p.P120	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR40-rel_recept	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept	-	no_errors	FFAR3	HGNC	ENSG00000185897	21	0	0	14	12	46.15	-	-	-	C	35850152	A	C	35850152	2	2	346	1	0	0	0	0	0	0	0	1	5875	146	6	5		5	FFAR3	19	35850152	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	130	35850152	23278831	384	38001			1	65		3	3	271	N	G_A	7.185466e-06
FFAR3	0	genome.wustl.edu	37	chr19	35850292	35850292	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccacagccagggcaccaatgGgacctgctacctggagttcc	11	15	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	35850292	35850292	G	C	SNP	FFAR3	ENST00000327809	human	ensembl	69_37n	1	known	missense	c.500	p.G167A	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept	-	no_errors	FFAR3	HGNC	ENSG00000185897	33	0	0	38	6	13.64	-	-	-	C	35850292	G	C	35850292	3	2	346	1	0	0	0	0	1	0	0	0	5875	1232	43	4	502	4	FFAR3	19	35850292	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	140	35850292	23278691	385	38002			1	65		3	3	271	N	G_A	7.185466e-06
MLL4	0	genome.wustl.edu	37	chr19	36220954	36220954	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttccacttcatgtgtgcccgGgccagctactgcatcttcca	8	15	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	36220954	36220954	G	A	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	silent	c.5004	p.R1668	0.982	pirsf_MeTrfase_trithorax,smart_Znf_PHD	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	55	0	0	19	15	44.12	-	-	-	A	36220954	G	A	36220954	2	1	346	1	0	0	0	0	0	0	0	1	9694	1219	43	4		4	MLL4	19	36220954	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	370662	36220954	22908029	386	38003										
ZNF568	0	genome.wustl.edu	37	chr19	37487632	37487632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	atagtgaaaataacaaatgtGcctttaatcatgattctgga	7	5	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	37487632	37487632	G	A	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	missense	c.847	p.A283T	0.019	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	22	0	0	5	8	61.54	-	-	-	A	37487632	G	A	37487632	3	1	346	1	0	0	0	0	1	0	0	0	18095	1334	46	4		4	ZNF568	19	37487632	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1266678	37487632	21641351	387	38004			2	66	1637340	4	4	566	G		8.30423e-08
ZNF568	0	genome.wustl.edu	37	chr19	37487723	37487723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggaatgtgggaaagcctttcGttccagctcacaaattagtc	10	9	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	37487723	37487723	G	A	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	missense	c.938	p.R313H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	19	0	0	9	10	52.63	-	-	-	A	37487723	G	A	37487723	3	1	346	1	0	0	0	0	1	0	0	0	18095	1160	40	1		1	ZNF568	19	37487723	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	91	37487723	21641260	388	38005			2	66	1637340	4	4	566	G		8.30423e-08
ZNF568	0	genome.wustl.edu	37	chr19	37487975	37487975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggaatgtggaaaggcttttcGttatgacacacagctgagcc	12	8	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	37487975	37487975	G	A	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	missense	c.1190	p.R397H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	33	0	0	11	14	56	-	-	-	A	37487975	G	A	37487975	3	1	346	1	0	0	0	0	1	0	0	0	18095	1160	40	1		1	ZNF568	19	37487975	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	252	37487975	21641008	389	38006			2	66	1637340	4	4	566	G		8.30423e-08
ZNF568	0	genome.wustl.edu	37	chr19	37488197	37488197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccatactggggagaaaccctGtaagtgtaaggaatgtggga	14	6	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	37488197	37488197	G	A	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	missense	c.1412	p.C471Y	0.959	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	27	0	0	15	23	60.53	-	-	-	A	37488197	G	A	37488197	3	1	346	1	0	0	0	0	1	0	0	0	18095	1392	48	4		4	ZNF568	19	37488197	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	222	37488197	21640786	390	38007			2	66	1637340	4	4	566	G		8.30423e-08
DLL3	0	genome.wustl.edu	37	chr19	39994719	39994719	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgtcccccatagtggtgtgcCgagcaggctgcagccctgag	14	13	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	39994719	39994719	C	T	SNP	DLL3	ENST00000205143	human	ensembl	69_37n	1	known	nonsense	c.661	p.R221*	0.456	pfam_EGF_extracell,smart_EGF-like	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DLL3	HGNC	ENSG00000090932	108	0	0	25	7	21.88	-	-	-	T	39994719	C	T	39994719	4	4	346	1	0	0	0	0	0	1	0	0	4603	644	23	1	679	1	DLL3	19	39994719	Nonsense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2506522	39994719	19134264	391	38008										
FCGBP	0	genome.wustl.edu	37	chr19	40368619	40368619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctggggctcgccagctgccGccccagatgggtatggaggg	17	13	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	40368619	40368619	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12729	p.G4243	0.496	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	205	0	0	54	27	33.33	-	-	-	A	40368619	G	A	40368619	2	1	346	1	0	0	0	0	0	0	0	1	5824	1074	38	1		1	FCGBP	19	40368619	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	373900	40368619	18760364	392	38009										
FCGBP	0	genome.wustl.edu	37	chr19	40376675	40376675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctccacgtggcctccagccGcctggcaagcactcacgtag	11	17	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	40376675	40376675	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.11747	p.A3916V	0.010	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	77	0	0	105	46	30.26	-	-	-	A	40376675	G	A	40376675	3	1	346	1	0	0	0	0	1	0	0	0	5824	1087	38	1	4522	1	FCGBP	19	40376675	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	8056	40376675	18752308	393	38010										
FCGBP	0	genome.wustl.edu	37	chr19	40392631	40392631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cggcaggcagggagagtcggGcaccacctcctcccaggagt	15	14	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	40392631	40392631	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.7873	p.P2625S	0.921	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	55	0	0	0	6	100	-	-	-	A	40392631	G	A	40392631	3	1	346	1	0	0	0	0	1	0	0	0	5824	1203	42	4	8428	4	FCGBP	19	40392631	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	15956	40392631	18736352	394	38011										
FCGBP	0	genome.wustl.edu	37	chr19	40392719	40392719	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	40392719	40392719	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.7785	p.N2595	0.999	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	53	0	0	0	11	100	-	-	-	A	40392719	G	A	40392719	2	1	346	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40392719	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	88	40392719	18736264	395	38012										
FCGBP	0	genome.wustl.edu	37	chr19	40406019	40406019	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cctttacccgcatggcacgtGcactgctgccgacagttgtc	10	15	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	40406019	40406019	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.4827	p.C1609	0.017	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	71	0	0	2	59	95.16	-	-	-	A	40406019	G	A	40406019	2	1	346	1	0	0	0	0	0	0	0	1	5824	1311	46	4		4	FCGBP	19	40406019	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	13300	40406019	18722964	396	38013										
CYP2F1	0	genome.wustl.edu	37	chr19	41631415	41631415	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagggcaccgatgtcatcacCctccttaacaccgtccacta	6	17	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	41631415	41631415	C	A	SNP	CYP2F1	ENST00000439903	human	ensembl	69_37n	1	putative	missense	c.70	p.P24T	0.039	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CYP2F1	HGNC	ENSG00000197446	60	0	0	55	21	27.63	-	-	-	A	41631415	C	A	41631415	3	1	346	1	0	0	0	0	1	0	0	0	4202	610	22	4	1200	4	CYP2F1	19	41631415	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1225396	41631415	17497568	397	38014										
PSG4	0	genome.wustl.edu	37	chr19	43699292	43699292	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cgctttaccctgggactgacAgggaggctctgaccatttag	12	11	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	43699292	43699292	A	C	SNP	PSG4	ENST00000405312	human	ensembl	69_37n	-1	known	silent	c.843	p.P281	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG4	HGNC	ENSG00000243137	132	0	0	157	36	18.65	-	-	-	C	43699292	A	C	43699292	2	2	346	1	0	0	0	0	0	0	0	1	12737	175	7	5		5	PSG4	19	43699292	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	2067877	43699292	15429691	398	38015										
KLK1	0	genome.wustl.edu	37	chr19	51323212	51323212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cacagcatgaagtctgtcacCttctggacgtgggctttttt	10	10	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	51323212	51323212	C	T	SNP	KLK1	ENST00000301420	human	ensembl	69_37n	-1	known	silent	c.576	p.K192	0.917	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK1	HGNC	ENSG00000167748	96	0	0	31	27	46.55	-	-	-	T	51323212	C	T	51323212	2	4	346	1	0	0	0	0	0	0	0	1	8450	680	24	4		4	KLK1	19	51323212	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7623920	51323212	7805771	399	38016										
ZNF880	0	genome.wustl.edu	37	chr19	52888048	52888048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	catagaatgcacacgggagaGcaaccttacaaatgtaatga	9	8	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	52888048	52888048	G	A	SNP	ZNF880	ENST00000422689	human	ensembl	69_37n	1	known	silent	c.1215	p.E405	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	92	0	0	70	64	47.76	-	-	-	A	52888048	G	A	52888048	2	1	346	1	0	0	0	0	0	0	0	1	18290	962	34	4		4	ZNF880	19	52888048	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1564836	52888048	6240935	400	38017										
ZNF813	0	genome.wustl.edu	37	chr19	53989945	53989945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caggaggagtggaaatgcctGgaccctgctcagaggactct	14	10	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	53989945	53989945	G	A	SNP	ZNF813	ENST00000396403	human	ensembl	69_37n	1	known	silent	c.75	p.L25	0.521	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346	57	0	0	185	143	43.6	-	-	-	A	53989945	G	A	53989945	2	1	346	1	0	0	0	0	0	0	0	1	18268	1335	47	4		4	ZNF813	19	53989945	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	1101897	53989945	5139038	401	38018										
TMC4	0	genome.wustl.edu	37	chr19	54675769	54675771	+	In_Frame_Del	DEL	CCC	CCC	-													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctcctcctcctcctccagcgCcccccaaggcagcaccccag							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	54675769	54675771	CCC	-	DEL	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	in_frame_del	c.163_161	p.G54in_frame_del	0.013:0.118:0.960	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	35	0	0	8	11	52.38	-	-	-	-	54675771	CCC	-	54675769	7	5	346	1	0	1	0	1	0	0	0	0	16082	739	26	0	2013	0	TMC4	19	54675769	In_Frame_Del	DEL	CCC	TCGA-AO-A12E-01A-11D-A10M-09	685824	54675769	4453214	402	38019										
LILRB3	0	genome.wustl.edu	37	chr19	54721253	54721253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtccaggaattccccagacaGtgaggagggaggagaggcca	16	9	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	54721253	54721253	G	A	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	silent	c.1735	p.L579	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	167	0	0	71	78	52	-	-	-	A	54721253	G	A	54721253	2	1	346	1	0	0	0	0	0	0	0	1	8847	1020	36	4		4	LILRB3	19	54721253	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	45484	54721253	4407730	403	38020										
LILRB5	0	genome.wustl.edu	37	chr19	54754934	54754934	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tttgtgtccaggaattccccAgacagtggggagggaggaga	16	7	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	54754934	54754934	A	G	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	silent	c.1701	p.S567	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	69	0	0	79	23	22.55	-	-	-	G	54754934	A	G	54754934	2	3	346	1	0	0	0	0	0	0	0	1	8849	203	7	5		5	LILRB5	19	54754934	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	33681	54754934	4374049	404	38021										
LILRB5	0	genome.wustl.edu	37	chr19	54755021	54755021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	actgcctgggggtcttcatcGtgtgggctctgctggagaga	16	9	3	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	54755021	54755021	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	silent	c.1614	p.H538	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	28	0	0	44	20	31.25	-	-	-	A	54755021	G	A	54755021	2	1	346	1	0	0	0	0	0	0	0	1	8849	1160	40	1		1	LILRB5	19	54755021	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	87	54755021	4373962	405	38022										
ZNF587	0	genome.wustl.edu	37	chr19	58352522	58352522	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaggcgttgtttgtgaagagGtgtaagttgcatgtgtcagg	17	3	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	19	58352522	58352522	G	A	SNP	ZNF587	ENST00000442832	human	ensembl	69_37n	1	known	silent	c.480	p.R160	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	253	0	0	104	110	51.4	-	-	-	A	58352522	G	A	58352522	2	1	346	1	0	0	0	0	0	0	0	1	18116	1276	44	4		4	ZNF587	19	58352522	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3597501	58352522	776461	406	38023										
NRSN2	0	genome.wustl.edu	37	chr20	330424	330424	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgctctcagcgacgaccctgAgggacctccggtcctgtgcc	12	16	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	330424	330424	A	C	SNP	NRSN2	ENST00000382285	human	ensembl	69_37n	1	known	missense	c.137	p.E46A	0.902	NULL	NULL	-	no_errors	NRSN2	HGNC	ENSG00000125841	15	0	0	4	7	63.64	-	-	-	C	330424	A	C	330424	3	2	346	1	0	0	0	0	1	0	0	0	10736	304	11	5	139	5	NRSN2	20	330424	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09		330424	62695096	407	38024										
SIGLEC1	0	genome.wustl.edu	37	chr20	3684515	3684515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggtgagaccaaagagcccacGccgttctcagcttggcaggt	13	12	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	3684515	3684515	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.930	p.G310	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	38	0	0	10	10	50	-	-	-	A	3684515	G	A	3684515	2	1	346	1	0	0	0	0	0	0	0	1	14394	1074	38	1		1	SIGLEC1	20	3684515	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	3354091	3684515	59341005	408	38025										
MAVS	0	genome.wustl.edu	37	chr20	3845016	3845016	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tgcctggacccacagggtcaGttgtatctactggcacctcc	10	14	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	3845016	3845016	G	T	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	missense	c.739	p.V247F	0.812	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	42	0	0	23	14	37.84	-	-	-	T	3845016	G	T	3845016	3	4	346	1	0	0	0	0	1	0	0	0	9409	1029	36	4	757	4	MAVS	20	3845016	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	160501	3845016	59180504	409	38026										
KIF16B	0	genome.wustl.edu	37	chr20	16492131	16492131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggttttagatgacttccgcCgaagtagatctctcacacgt	9	10	2	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	16492131	16492131	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.488	p.R163Q	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	35	0	0	83	102	55.14	-	-	-	T	16492131	C	T	16492131	3	4	346	1	0	0	0	0	1	0	0	0	8330	652	23	1	3549	1	KIF16B	20	16492131	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12647115	16492131	46533389	410	38027										
RRBP1	0	genome.wustl.edu	37	chr20	17596586	17596586	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgacctcctcaaactcggcCgtgagcttctgccgctgtgt	10	15	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	17596586	17596586	C	G	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	silent	c.3936	p.T1312	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	9	0	0	1	13	92.86	-	-	-	G	17596586	C	G	17596586	2	3	346	1	0	0	0	0	0	0	0	1	13764	639	23	3		3	RRBP1	20	17596586	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1104455	17596586	45428934	411	38028										
RRBP1	0	genome.wustl.edu	37	chr20	17602410	17602410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttgagatcctgcagccactcGgtgtaattctgcaatgaaac	9	10	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	17602410	17602410	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	silent	c.3249	p.T1083	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	20	0	0	22	30	57.69	-	-	-	A	17602410	G	A	17602410	2	1	346	1	0	0	0	0	0	0	0	1	13764	1103	39	1		1	RRBP1	20	17602410	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5824	17602410	45423110	412	38029										
FOXA2	0	genome.wustl.edu	37	chr20	22562872	22562872	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggcgccggctctggggggctCagcgccgcagccggcgtccc	18	17	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	22562872	22562872	C	T	SNP	FOXA2	ENST00000319993	human	ensembl	69_37n	-1	known	silent	c.1008	p.L336	1.000	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXA2	HGNC	ENSG00000125798	41	0	0	4	7	63.64	-	-	-	T	22562872	C	T	22562872	2	4	346	1	0	0	0	0	0	0	0	1	6036	813	29	2		2	FOXA2	20	22562872	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	4960462	22562872	40462648	413	38030										
TTLL9	0	genome.wustl.edu	37	chr20	30513735	30513735	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gcccgattctccaacacccgCttcacactgaacagcattga	6	16	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	30513735	30513735	C	T	SNP	TTLL9	ENST00000375922	human	ensembl	69_37n	1	known	silent	c.546	p.R182	0.957	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL9	HGNC	ENSG00000131044	34	0	0	21	23	52.27	-	-	-	T	30513735	C	T	30513735	2	4	346	1	0	0	0	0	0	0	0	1	16831	812	28	4		4	TTLL9	20	30513735	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	7950863	30513735	32511785	414	38031										
NCOA6	0	genome.wustl.edu	37	chr20	33330151	33330151	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	actaccacagaatctaatttGtgagtttgtggggtagcaaa	10	6	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	33330151	33330151	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	silent	c.3909	p.H1303	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	127	0	0	146	90	38.14	-	-	-	A	33330151	G	A	33330151	2	1	346	1	0	0	0	0	0	0	0	1	10305	1368	48	4		4	NCOA6	20	33330151	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	2816416	33330151	29695369	415	38032										
MYBL2	0	genome.wustl.edu	37	chr20	42343800	42343800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	actgccccttcaaactcttcCagcctcaccctgtcaggtat	5	17	4	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	42343800	42343800	C	T	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	silent	c.1851	p.S617	0.004	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	58	0	0	39	72	64.86	-	-	-	T	42343800	C	T	42343800	2	4	346	1	0	0	0	0	0	0	0	1	10082	581	21	4		4	MYBL2	20	42343800	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	9013649	42343800	20681720	416	38033										
ZNFX1	0	genome.wustl.edu	37	chr20	47855655	47855655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aagcaagctgctgcatccctGctggtgctgcccttctgaaa	10	13	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	47855655	47855655	G	T	SNP	ZNFX1	ENST00000371754	human	ensembl	69_37n	-1	known	missense	c.3609	p.S1203R	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	ZNFX1	HGNC	ENSG00000124201	29	0	0	28	19	40.43	-	-	-	T	47855655	G	T	47855655	3	4	346	1	0	0	0	0	1	0	0	0	18298	1334	46	4		4	ZNFX1	20	47855655	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5511855	47855655	15169865	417	38034										
GTPBP5	0	genome.wustl.edu	37	chr20	60768622	60768622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgctctcggtcggccgtgCggacctcgccaagcatcagg	14	15	2	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	60768622	60768622	C	T	SNP	GTPBP5	ENST00000370823	human	ensembl	69_37n	1	known	missense	c.146	p.A49V	0.002	NULL	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP5	HGNC	ENSG00000101181	22	0	0	20	14	41.18	-	-	-	T	60768622	C	T	60768622	3	4	346	1	0	0	0	0	1	0	0	0	6934	768	27	1	148	1	GTPBP5	20	60768622	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	12912967	60768622	2256898	418	38035										
COL20A1	0	genome.wustl.edu	37	chr20	61938878	61938878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ctgcctgccccccgtgcctgCtgacatggtcttcctggtgg	12	16	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	20	61938878	61938878	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	missense	c.533	p.A178V	0.003	smart_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	11	0	0	10	6	37.5	-	-	-	T	61938878	C	T	61938878	3	4	346	1	0	0	0	0	1	0	0	0	3709	797	28	4	551	4	COL20A1	20	61938878	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	1170256	61938878	1086642	419	38036										
NCAM2	0	genome.wustl.edu	37	chr21	22906884	22906884	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tggatcaaaagaaccaatagTggagatgagaacagaggatg	13	4	1	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	21	22906884	22906884	T	G	SNP	NCAM2	ENST00000400546	human	ensembl	69_37n	1	known	missense	c.2309	p.V770G	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	96	0	0	111	85	43.37	-	-	-	G	22906884	T	G	22906884	3	3	346	1	0	0	0	0	1	0	0	0	10275	1696	59	5	2375	5	NCAM2	21	22906884	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09		22906884	25223011	420	38037										
BRWD1	0	genome.wustl.edu	37	chr21	40569277	40569277	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acctgtaaactactgtctgaGtcactggaacagaccctttt	7	11	2	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	21	40569277	40569277	G	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	silent	c.5718	p.D1906	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	46	0	0	47	57	54.29	-	-	-	A	40569277	G	A	40569277	2	1	346	1	0	0	0	0	0	0	0	1	1533	1020	36	4		4	BRWD1	21	40569277	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	17662393	40569277	7560618	421	38038										
BACE2	0	genome.wustl.edu	37	chr21	42598252	42598252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gtggcaggaaccccgcactcCtacatagacacgtactttga	9	13	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	21	42598252	42598252	C	T	SNP	BACE2	ENST00000330333	human	ensembl	69_37n	1	known	silent	c.372	p.S124	0.016	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Pept_A1_BACE1	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Peptidase_A1,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240	27	0	0	31	18	36	-	-	-	T	42598252	C	T	42598252	2	4	346	1	0	0	0	0	0	0	0	1	1286	668	24	4		4	BACE2	21	42598252	Silent	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2028975	42598252	5531643	422	38039										
ICOSLG	0	genome.wustl.edu	37	chr21	45649848	45649848	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	aggcaagggacttttgccttTtgaaagttttttgaaactct	9	6	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	21	45649848	45649848	T	C	SNP	ICOSLG	ENST00000400379	human	ensembl	69_37n	-1	putative	silent	c.987	p.Q329	0.003	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	16	0	0	7	14	66.67	-	-	-	C	45649848	T	C	45649848	2	2	346	1	0	0	0	0	0	0	0	1	7541	1856	64	5		5	ICOSLG	21	45649848	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	3051596	45649848	2480047	423	38040										
POFUT2	0	genome.wustl.edu	37	chr21	46685175	46685175	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctgcctgaaaacaaccgccAcccccgagagcagcggagcc	11	17	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	21	46685175	46685175	A	G	SNP	POFUT2	ENST00000471540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POFUT2	HGNC	ENSG00000186866	16	0	0	0	9	100	-	-	-	G	46685175	A	G	46685175	1	3	346	0	1	0	0	0	0	0	0	0	12258	174	6	5		5	POFUT2	21	46685175	RNA	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	1035327	46685175	1444720	424	38041										
POTEH	0	genome.wustl.edu	37	chr22	16275279	16275279	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	agaaagtaactggcaaattcTatgtataaaattgtaataaa	6	3	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	16275279	16275279	T	C	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	splice_site	c.1167-2	e6-2	0.007	-	-	-	no_errors	POTEH	HGNC	ENSG00000198062	12	0	0	7	30	81.08	-	-	-	C	16275279	T	C	16275279	5	2	346	1	0	0	0	0	0	0	1	0	12341	1536	53	5	492	5	POTEH	22	16275279	Splice_Site	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09		16275279	35029287	425	38042										
MTMR3	0	genome.wustl.edu	37	chr22	30416460	30416460	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccccagagactgaaaacaggGcctcagagcagcccccaggt	11	15	1	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	30416460	30416460	G	T	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.2812	p.A938S	0.980	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	26	0	0	11	13	54.17	-	-	-	T	30416460	G	T	30416460	3	4	346	1	0	0	0	0	1	0	0	0	10017	1203	42	4	2870	4	MTMR3	22	30416460	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	14141181	30416460	20888106	426	38043										
APOL2	0	genome.wustl.edu	37	chr22	36629466	36629466	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acctcgttccagcttcctctTccctcactctcacaccaagg	4	19	3	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	36629466	36629466	T	A	SNP	APOL2	ENST00000451256	human	ensembl	69_37n	-1	putative	missense	c.239	p.E80V	0.631	NULL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	21	0	0	4	4	50	-	-	-	A	36629466	T	A	36629466	3	1	346	1	0	0	0	0	1	0	0	0	808	1798	62	5		5	APOL2	22	36629466	Missense_Mutation	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	6213006	36629466	14675100	427	38044										
APOL2	0	genome.wustl.edu	37	chr22	36633107	36633107	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	acagagctggggcctcggacCtgcccaatacttgtgaggag	14	11	0	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	36633107	36633107	C	A	SNP	APOL2	ENST00000451256	human	ensembl	69_37n	-1	putative	missense	c.203	p.R68M	0.000	NULL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	16	0	0	5	9	64.29	-	-	-	A	36633107	C	A	36633107	3	1	346	1	0	0	0	0	1	0	0	0	808	696	24	4		4	APOL2	22	36633107	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	3641	36633107	14671459	428	38045										
TCF20	0	genome.wustl.edu	37	chr22	42607206	42607206	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagcctccgcactgttcgaaGatgcgctcctcctaatattt	7	14	0	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	42607206	42607206	G	A	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.4106	p.S1369F	0.574	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	72	0	0	28	49	63.64	-	-	-	A	42607206	G	A	42607206	3	1	346	1	0	0	0	0	1	0	0	0	15785	942	33	2	1814	2	TCF20	22	42607206	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	5974099	42607206	8697360	429	38046										
ZBED4	0	genome.wustl.edu	37	chr22	50277363	50277363	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ggacggtgatttcgtttctgAtaaaataaagtttaaaatag	9	3	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	50277363	50277363	A	T	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.53	p.D18V	0.070	NULL	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	41	0	0	22	10	31.25	-	-	-	T	50277363	A	T	50277363	3	4	346	1	0	0	0	0	1	0	0	0	17616	333	12	5	55	5	ZBED4	22	50277363	Missense_Mutation	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	7670157	50277363	1027203	430	38047										
CPT1B	0	genome.wustl.edu	37	chr22	51012790	51012790	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ccttgcccgggatccgagtgGtgttgaacatcctctccatc	10	14	1	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	22	51012790	51012790	G	C	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	missense	c.944	p.T315S	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	94	0	0	10	15	60	-	-	-	C	51012790	G	C	51012790	3	2	346	1	0	0	0	0	1	0	0	0	3862	1261	44	4	1418	4	CPT1B	22	51012790	Missense_Mutation	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	735427	51012790	291776	431	38048										
GYG2	0	genome.wustl.edu	37	chrX	2761050	2761050	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	ttttcgtagagacagagtttCaccatggtgcccaggctggt	12	9	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	2761050	2761050	C	T	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	missense	c.19	p.H7Y	0.001	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	17	0	0	4	6	60	-	-	-	T	2761050	C	T	2761050	3	4	346	1	0	0	0	0	1	0	0	0	6957	826	29	2	25	2	GYG2	23	2761050	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09		2761050	152509510	432	38049										
MAGEB10	0	genome.wustl.edu	37	chrX	27840071	27840071	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	attatcttcacaaatggcaaTtgtgtcgctgaggaggaagt	11	6	2	1			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	27840071	27840071	T	C	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	silent	c.648	p.N216	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	115	0	0	36	35	49.3	-	-	-	C	27840071	T	C	27840071	2	2	346	1	0	0	0	0	0	0	0	1	9244	1490	52	5		5	MAGEB10	23	27840071	Silent	SNP	T	TCGA-AO-A12E-01A-11D-A10M-09	25079021	27840071	127430489	433	38050										
CXorf48	0	genome.wustl.edu	37	chrX	134294370	134294370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gctatggaaaaataaatgctGttactaatataaatattatc	5	4	0	0			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	134294370	134294370	G	A	SNP	CXorf48	ENST00000276241	human	ensembl	69_37n	-1	known	silent	c.390	p.N130	0.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf48	HGNC	ENSG00000169551	22	0	0	64	44	40.74	-	-	-	A	134294370	G	A	134294370	2	1	346	1	0	0	0	0	0	0	0	1	4142	1368	48	4		4	CXorf48	23	134294370	Silent	SNP	G	TCGA-AO-A12E-01A-11D-A10M-09	106454299	134294370	20976190	434	38051										
SPANXN4	0	genome.wustl.edu	37	chrX	142121867	142121867	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	cagagtttgaaagagacagaAaaagcaaaatatccaacatt	7	6	0	4			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	142121867	142121867	A	G	SNP	SPANXN4	ENST00000446864	human	ensembl	69_37n	1	known	silent	c.135	p.E45	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN4	HGNC	ENSG00000189326	160	0	0	65	59	47.58	-	-	-	G	142121867	A	G	142121867	2	3	346	1	0	0	0	0	0	0	0	1	15084	11	1	5		5	SPANXN4	23	142121867	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	7827497	142121867	13148693	435	38052										
PRRG3	0	genome.wustl.edu	37	chrX	150868724	150868724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	gaccaatcagaagcaaggaaAgacacccagcctaaggcata	9	11	1	2			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	150868724	150868724	A	G	SNP	PRRG3	ENST00000370354	human	ensembl	69_37n	1	known	silent	c.288	p.K96	0.001	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	35	0	0	6	7	53.85	-	-	-	G	150868724	A	G	150868724	2	3	346	1	0	0	0	0	0	0	0	1	12687	87	3	5		5	PRRG3	23	150868724	Silent	SNP	A	TCGA-AO-A12E-01A-11D-A10M-09	8746857	150868724	4401836	436	38053										
UBL4A	0	genome.wustl.edu	37	chrX	153713787	153713787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	caggtacatgccagctatgaCgatgatgagcccaactgcaa	10	11	0	3			TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	153713787	153713787	C	T	SNP	UBL4A	ENST00000369653	human	ensembl	69_37n	-1	putative	missense	c.425	p.R142H	0.000	NULL	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	UBL4A	HGNC	ENSG00000102178	51	0	0	4	14	77.78	-	-	-	T	153713787	C	T	153713787	3	4	346	1	0	0	0	0	1	0	0	0	16984	551	19	1		1	UBL4A	23	153713787	Missense_Mutation	SNP	C	TCGA-AO-A12E-01A-11D-A10M-09	2845063	153713787	1556773	437	38054										
DKC1	0	genome.wustl.edu	37	chrX	154005088	154005089	+	In_Frame_Ins	INS	-	-	AAG													0.0688073394495413	30	1	0.847837873207575	1.71494478898805	0.676749513143266	0.0289500769872033	0.252181446871713	0	tctaggacagtgataccaccINSaagaagaagaagaagaagaa							TCGA-AO-A12E-01A-11D-A10M-09	TCGA-AO-A12E-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3990b59-e2f4-4759-8eb0-11ad3c34ac50	6158f7a6-f20f-48ec-ae6d-657f09f9a6f0	X	154005088	154005089	-	AAG	INS	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	in_frame_ins	c.1491_1492	p.501in_frame_insK	0.114:0.284	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	265	0	0	276	110	28.5	-	-	-	AAG	154005089	-	AAG	154005088	7	5	346	1	0	1	1	0	0	0	0	0	4578	581	21	0	1549	0	DKC1	23	154005088	In_Frame_Ins	INS	-	TCGA-AO-A12E-01A-11D-A10M-09	291301	154005088	1265472	438	38055										
SESN2	0	genome.wustl.edu	37	chr1	28598251	28598251	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcactgatgtcctctgggCgagtagacaacctggcagtg	14	10	1	2			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	1	28598251	28598251	C	T	SNP	SESN2	ENST00000253063	human	ensembl	69_37n	1	known	nonsense	c.223	p.R75*	0.973	pfam_PA26	pfam_PA26	-	no_errors	SESN2	HGNC	ENSG00000130766	8	0	0	19	5	20.83	-	-	-	T	28598251	C	T	28598251	4	4	347	1	0	0	0	0	0	1	0	0	14213	760	27	1	233	1	SESN2	1	28598251	Nonsense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09		28598251	220652370	1	38056										
FLG	0	genome.wustl.edu	37	chr1	152277404	152277404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcagatgaagcttgtccacGcggaatgcctgagtgtctgg	14	9	1	3			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	1	152277404	152277404	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.9958	p.R3320C	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	95	0	0	247	148	37.37	-	-	-	A	152277404	G	A	152277404	3	1	347	1	0	0	0	0	1	0	0	0	5968	1087	38	1	2231	1	FLG	1	152277404	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	123679153	152277404	96973217	2	38057										
ATAD2B	0	genome.wustl.edu	37	chr2	24080330	24080330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgaactggagctaatccaTctatttcatcaaaaaatatt	5	8	3	0			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	2	24080330	24080330	T	C	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.1523	p.D508G	1.000	pfam_ATPase_AAA_core,pfam_IstB_ATP-bd,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	138	0	0	61	49	44.55	-	-	-	C	24080330	T	C	24080330	3	2	347	1	0	0	0	0	1	0	0	0	1076	1435	50	5	2917	5	ATAD2B	2	24080330	Missense_Mutation	SNP	T	TCGA-AO-A12F-01A-11D-A10Y-09		24080330	219119043	3	38058										
MKRN2	0	genome.wustl.edu	37	chr3	12623389	12623389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tttatcgccatgcttaccccGatgggcggctagcagagcct	11	13	0	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	3	12623389	12623389	G	A	SNP	MKRN2	ENST00000170447	human	ensembl	69_37n	1	known	missense	c.1051	p.D351N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975	75	0	0	77	16	17.2	-	-	-	A	12623389	G	A	12623389	3	1	347	1	0	0	0	0	1	0	0	0	9678	1058	37	1	1077	1	MKRN2	3	12623389	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		12623389	185399041	4	38059										
ZXDC	0	genome.wustl.edu	37	chr3	126180635	126180635	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attggaggtcaaagccagtgGgtcgtcactcaagttcttca	11	9	5	0			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	3	126180635	126180635	G	T	SNP	ZXDC	ENST00000389709	human	ensembl	69_37n	-1	known	missense	c.1870	p.P624T	0.958	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476	38	0	0	79	25	24.04	-	-	-	T	126180635	G	T	126180635	3	4	347	1	0	0	0	0	1	0	0	0	18343	1232	43	4	732	4	ZXDC	3	126180635	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	113557246	126180635	71841795	5	38060										
DUSP1	0	genome.wustl.edu	37	chr5	172195858	172195858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagacggggaagttgaacacGgtggtggtggaggtgcctcg	20	6	0	2			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	5	172195858	172195858	G	A	SNP	DUSP1	ENST00000239223	human	ensembl	69_37n	-1	known	silent	c.1011	p.T337	0.000	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129	18	0	0	61	17	21.79	-	-	-	A	172195858	G	A	172195858	2	1	347	1	0	0	0	0	0	0	0	1	4844	1103	39	1		1	DUSP1	5	172195858	Silent	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		172195858	8719402	6	38061										
NHLRC1	0	genome.wustl.edu	37	chr6	18121861	18121861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catttccctggtgatcaaagGtcacagcggaggcagttatt	11	9	2	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	6	18121861	18121861	G	A	SNP	NHLRC1	ENST00000340650	human	ensembl	69_37n	-1	known	missense	c.977	p.T326I	1.000	NULL	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566	25	0	0	10	15	60	-	-	-	A	18121861	G	A	18121861	3	1	347	1	0	0	0	0	1	0	0	0	10477	1261	44	4	214	4	NHLRC1	6	18121861	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		18121861	152993206	7	38062										
KIAA0240	0	genome.wustl.edu	37	chr6	42832634	42832634	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	aggaaacatttctaaaaaaaCagaatgccttggcagagcac							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	6	42832634	42832634	C	-	DEL	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	frame_shift_del	c.2690	p.T897fs	0.042	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	48	0	0	86	31	26.27	-	-	-	-	42832634	C	-	42832634	7	5	347	1	0	1	0	1	0	0	0	0	8216	478	17	0	2732	0	KIAA0240	6	42832634	Frame_Shift_Del	DEL	C	TCGA-AO-A12F-01A-11D-A10Y-09	24710773	42832634	128282433	8	38063										
UNC93A	0	genome.wustl.edu	37	chr6	167728785	167728785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtacagcatgtttttgtgcGtgcacgtcaagctctacatt	10	9	2	0			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	6	167728785	167728785	G	A	SNP	UNC93A	ENST00000230256	human	ensembl	69_37n	1	known	missense	c.1219	p.V407M	0.846	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494	48	0	0	219	29	11.69	-	-	-	A	167728785	G	A	167728785	3	1	347	1	0	0	0	0	1	0	0	0	17093	1145	40	1	1249	1	UNC93A	6	167728785	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	124896151	167728785	3386282	9	38064										
EGR3	0	genome.wustl.edu	37	chr8	22548379	22548379	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	cggttggggtacttgcggggCcggatgggcttgagggtgag							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	8	22548379	22548379	C	-	DEL	EGR3	ENST00000317216	human	ensembl	69_37n	-1	known	frame_shift_del	c.771	p.R259fs	0.999	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388	12	0	0	88	25	22.12	-	-	-	-	22548379	C	-	22548379	7	5	347	1	0	1	0	1	0	0	0	0	5008	726	26	0	396	0	EGR3	8	22548379	Frame_Shift_Del	DEL	C	TCGA-AO-A12F-01A-11D-A10Y-09		22548379	123815643	10	38065										
TG	0	genome.wustl.edu	37	chr8	133899602	133899602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccaaggtgccccacagactGtgaaaagcaaagggctcgca	12	12	0	2			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	8	133899602	133899602	G	A	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.1985	p.C662Y	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	38	0	0	70	13	15.66	-	-	-	A	133899602	G	A	133899602	3	1	347	1	0	0	0	0	1	0	0	0	15908	1377	48	4	2019	4	TG	8	133899602	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	111351223	133899602	12464420	11	38066										
DMRT2	0	genome.wustl.edu	37	chr9	1053792	1053792	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	gtaccagaggcaagtcagagCccccagtttgctggccaaaa							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	9	1053792	1053792	C	-	DEL	DMRT2	ENST00000302441	human	ensembl	69_37n	1	known	frame_shift_del	c.596	p.S201fs	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	99	0	0	47	56	53.33	-	-	-	-	1053792	C	-	1053792	7	5	347	1	0	1	0	1	0	0	0	0	4622	739	26	0	602	0	DMRT2	9	1053792	Frame_Shift_Del	DEL	C	TCGA-AO-A12F-01A-11D-A10Y-09		1053792	140159639	12	38067										
TRIM6	0	genome.wustl.edu	37	chr11	5632399	5632399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccatgacagtgccccctcgcCgtgttggggttttcttagat	11	12	1	2			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	11	5632399	5632399	C	T	SNP	TRIM6	ENST00000380097	human	ensembl	69_37n	1	known	missense	c.1378	p.R460C	0.682	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6	HGNC	ENSG00000121236	100	0	0	53	13	19.7	-	-	-	T	5632399	C	T	5632399	3	4	347	1	0	0	0	0	1	0	0	0	16629	652	23	1	1408	1	TRIM6	11	5632399	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09		5632399	129374117	13	38068										
KIAA1377	0	genome.wustl.edu	37	chr11	101818866	101818866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcccgtagaccaacaataAactggaggtaagtaatttat	7	7	0	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	11	101818866	101818866	A	C	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.499	p.N167H	0.218	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	199	0	0	85	23	21.3	-	-	-	C	101818866	A	C	101818866	3	2	347	1	0	0	0	0	1	0	0	0	8279	14	1	5	513	5	KIAA1377	11	101818866	Missense_Mutation	SNP	A	TCGA-AO-A12F-01A-11D-A10Y-09	96186467	101818866	33187650	14	38069										
OPCML	0	genome.wustl.edu	37	chr11	132290114	132290114	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgatgaagaagtgggctaaGagggtccctgatagccagag	15	6	0	6			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	11	132290114	132290114	G	T	SNP	OPCML	ENST00000541867	human	ensembl	69_37n	-1	known	silent	c.1038	p.L346	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	OPCML	HGNC	ENSG00000183715	27	0	0	6	23	79.31	-	-	-	T	132290114	G	T	132290114	2	4	347	1	0	0	0	0	0	0	0	1	10947	929	33	2		2	OPCML	11	132290114	Silent	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	30471248	132290114	2716402	15	38070										
WNK1	0	genome.wustl.edu	37	chr12	970296	970297	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	gttggtacgggaggagcaagINSaaaaaaaaaagcaggaagag							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	12	970296	970297	-	A	INS	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	frame_shift_ins	c.1738_1739	p.K584fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	29	0	0	41	6	12.77	-	-	-	A	970297	-	A	970296	7	5	347	1	0	1	1	0	0	0	0	0	17474	943	33	0	1764	0	WNK1	12	970296	Frame_Shift_Ins	INS	-	TCGA-AO-A12F-01A-11D-A10Y-09		970296	132881599	16	38071										
MORN3	0	genome.wustl.edu	37	chr12	122107317	122107317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtatacctggctccgcaggcCgttcctctgggccttccggt	12	15	1	0			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	12	122107317	122107317	C	T	SNP	MORN3	ENST00000355329	human	ensembl	69_37n	-1	known	missense	c.73	p.G25S	0.726	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714	62	0	0	39	24	38.1	-	-	-	T	122107317	C	T	122107317	3	4	347	1	0	0	0	0	1	0	0	0	9781	652	23	1	669	1	MORN3	12	122107317	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09	121137021	122107317	11744578	17	38072										
POSTN	0	genome.wustl.edu	37	chr13	38172818	38172818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttggcgtttatagggttaaCaataagcagcaatagtagag	12	4	0	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	13	38172818	38172818	C	T	SNP	POSTN	ENST00000379747	human	ensembl	69_37n	-1	known	missense	c.46	p.V16I	0.134	pirsf_TGFb-ind_bIGH3/osteoblast_fac2	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	242	0	0	82	58	41.43	-	-	-	T	38172818	C	T	38172818	3	4	347	1	0	0	0	0	1	0	0	0	12333	478	17	4	2556	4	POSTN	13	38172818	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09		38172818	76997060	18	38073										
UNC13C	0	genome.wustl.edu	37	chr15	54435218	54435218	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctgattctctttcagataGcagttctgtggatgaaaagg	10	7	3	3			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	15	54435218	54435218	G	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.2987	p.S996T	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	415	0	0	108	30	21.74	-	-	-	C	54435218	G	C	54435218	3	2	347	1	0	0	0	0	1	0	0	0	17083	971	34	4	2993	4	UNC13C	15	54435218	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		54435218	48096174	19	38074										
WRAP53	0	genome.wustl.edu	37	chr17	7606441	7606441	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaaggactgcaccaatggcGtgaggtcctcagttcaattc	11	10	2	2			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	17	7606441	7606441	G	C	SNP	WRAP53	ENST00000316024	human	ensembl	69_37n	1	known	missense	c.1399	p.V467L	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	20	0	0	37	16	30.19	-	-	-	C	7606441	G	C	7606441	3	2	347	1	0	0	0	0	1	0	0	0	17497	1145	40	3	1433	3	WRAP53	17	7606441	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		7606441	73588769	20	38075										
KRT14	0	genome.wustl.edu	37	chr17	39742881	39742881	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctgctgaagccaccgccaTagccgccccccagcccgcag	10	20	0	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	17	39742881	39742881	T	A	SNP	KRT14	ENST00000167586	human	ensembl	69_37n	-1	known	missense	c.206	p.Y69F	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	49	0	0	89	96	51.89	-	-	-	A	39742881	T	A	39742881	3	1	347	1	0	0	0	0	1	0	0	0	8504	1406	49	5	1244	5	KRT14	17	39742881	Missense_Mutation	SNP	T	TCGA-AO-A12F-01A-11D-A10Y-09	32136440	39742881	41452329	21	38076										
KPNA2	0	genome.wustl.edu	37	chr17	66033483	66033483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttttctcaaggaaatgaggCgtcgcagaatagaggtcaat	11	7	2	3			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	17	66033483	66033483	C	T	SNP	KPNA2	ENST00000330459	human	ensembl	69_37n	1	known	missense	c.85	p.R29C	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold,pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481	94	0	0	36	31	45.59	-	-	-	T	66033483	C	T	66033483	3	4	347	1	0	0	0	0	1	0	0	0	8483	768	27	1	91	1	KPNA2	17	66033483	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09	26290602	66033483	15161727	22	38077										
PLIN4	0	genome.wustl.edu	37	chr19	4513446	4513446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacattcactgcccccgtgaGcccagtggacaccgtgtcct	9	17	1	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	19	4513446	4513446	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.484	p.L162F	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	19	0	0	30	18	36.73	-	-	-	A	4513446	G	A	4513446	3	1	347	1	0	0	0	0	1	0	0	0	12166	971	34	4	3605	4	PLIN4	19	4513446	Missense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09		4513446	54615537	23	38078										
ZNF320	0	genome.wustl.edu	37	chr19	53385122	53385122	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttctcaatttcctgggagCaaaatgctccaatgtgataa	7	9	1	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	19	53385122	53385122	C	G	SNP	ZNF320	ENST00000391781	human	ensembl	69_37n	-1	known	missense	c.257	p.C86S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	154	0	0	102	20	16.39	-	-	-	G	53385122	C	G	53385122	3	3	347	1	0	0	0	0	1	0	0	0	17935	710	25	4	1276	4	ZNF320	19	53385122	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09	48871676	53385122	5743861	24	38079										
BTBD3	0	genome.wustl.edu	37	chr20	11900400	11900400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgggagctctgtgttccatgCgatgttttacggagaacttg	13	7	1	1			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	20	11900400	11900400	C	T	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	missense	c.452	p.A151V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	182	0	0	77	18	18.95	-	-	-	T	11900400	C	T	11900400	3	4	347	1	0	0	0	0	1	0	0	0	1553	768	27	1	462	1	BTBD3	20	11900400	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09		11900400	51125120	25	38080										
FAM47B	0	genome.wustl.edu	37	chrX	34960976	34960976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accggaggccacaggaccggCcaaggtcccaaggcatggac	14	14	0	0			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	X	34960976	34960976	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.28	p.P10S	0.006	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	19	0	0	2	10	83.33	-	-	-	T	34960976	C	T	34960976	3	4	347	1	0	0	0	0	1	0	0	0	5616	739	26	4	30	4	FAM47B	23	34960976	Missense_Mutation	SNP	C	TCGA-AO-A12F-01A-11D-A10Y-09		34960976	120309584	26	38081										
TAF1	0	genome.wustl.edu	37	chrX	70608656	70608656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggaagaagagatcagagctAtggtgtcaccagagcagtgc	14	8	2	4			TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	X	70608656	70608656	A	G	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.2635	p.M879V	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	222	0	0	30	106	77.94	-	-	-	G	70608656	A	G	70608656	3	3	347	1	0	0	0	0	1	0	0	0	15605	449	16	5	2764	5	TAF1	23	70608656	Missense_Mutation	SNP	A	TCGA-AO-A12F-01A-11D-A10Y-09	35647680	70608656	84661904	27	38082										
CDX4	0	genome.wustl.edu	37	chrX	72673370	72673370	+	Nonsense_Mutation	SNP	G	G	T													0	0	1	0	0	0	1	1	0	cagggaaaaccaggacaaaaGaaaagtatcgtgtagtttac							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	X	72673370	72673370	G	T	SNP	CDX4	ENST00000373514	human	ensembl	69_37n	1	known	nonsense	c.520	p.E174*	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264	172	0	0	40	16	28.57	-	-	-	T	72673370	G	T	72673370	4	4	347	1	0	0	0	0	0	1	0	0	3213	943	33	2	526	2	CDX4	23	72673370	Nonsense_Mutation	SNP	G	TCGA-AO-A12F-01A-11D-A10Y-09	2064714	72673370	82597190	28	38083	311	2								
CDX4	0	genome.wustl.edu	37	chrX	72673371	72673371	+	Missense_Mutation	SNP	A	A	G													0	0	1	0	0	0	1	1	0	agggaaaaccaggacaaaagAaaagtatcgtgtagtttaca							TCGA-AO-A12F-01A-11D-A10Y-09	TCGA-AO-A12F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1617673-57c2-40c1-a970-f3692ee13cf3	be77b3ee-bdc2-4208-8894-af0e15e43af0	X	72673371	72673371	A	G	SNP	CDX4	ENST00000373514	human	ensembl	69_37n	1	known	missense	c.521	p.E174G	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264	173	0	0	41	16	28.07	-	-	-	G	72673371	A	G	72673371	3	3	347	1	0	0	0	0	1	0	0	0	3213	246	9	5	527	5	CDX4	23	72673371	Missense_Mutation	SNP	A	TCGA-AO-A12F-01A-11D-A10Y-09	1	72673371	82597189	29	38084	311	2								
MTOR	0	genome.wustl.edu	37	chr1	11317205	11317205	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tcgggtggcattcccaccttCcactcctatgaggctagctg	10	14	0	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	1	11317205	11317205	C	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	nonsense	c.289	p.E97*	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	29	0	0	31	16	34.04	-	-	-	A	11317205	C	A	11317205	4	1	348	1	0	0	0	0	0	1	0	0	10026	864	30	2	7580	2	MTOR	1	11317205	Nonsense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09		11317205	237933416	1	38085										
ACOT11	0	genome.wustl.edu	37	chr1	55059671	55059671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	agaagcagtggaatgtgtgcAaggccttggccaccttcgtg	14	9	0	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	1	55059671	55059671	A	G	SNP	ACOT11	ENST00000371316	human	ensembl	69_37n	1	known	missense	c.430	p.K144E	1.000	NULL	pfam_START_lipid-bd,pfam_Thioestr_supf,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT11	HGNC	ENSG00000162390	10	0	0	20	10	33.33	-	-	-	G	55059671	A	G	55059671	3	3	348	1	0	0	0	0	1	0	0	0	149	131	5	5	448	5	ACOT11	1	55059671	Missense_Mutation	SNP	A	TCGA-AO-A12G-01A-11D-A10M-09	43742466	55059671	194190950	2	38086										
FAM73A	0	genome.wustl.edu	37	chr1	78338700	78338701	+	Frame_Shift_Ins	INS	-	-	T													0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cccagcagatcccagatggaINSttttttgcccatttttatgc							TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	1	78338700	78338701	-	T	INS	FAM73A	ENST00000370791	human	ensembl	69_37n	1	known	frame_shift_ins	c.1575_1576	p.A527fs	1.000:1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	346	0	0	318	123	27.89	-	-	-	T	78338701	-	T	78338700	7	5	348	1	0	1	1	0	0	0	0	0	5662	320	12	0	1633	0	FAM73A	1	78338700	Frame_Shift_Ins	INS	-	TCGA-AO-A12G-01A-11D-A10M-09	23279029	78338700	170911921	3	38087										
COL24A1	0	genome.wustl.edu	37	chr1	86430711	86430711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cctttaagccttctggtcctGgttcacctgcataccccttt	6	15	2	0			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	1	86430711	86430711	G	A	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.2498	p.P833L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	228	1	0.43	155	96	37.94	-	-	-	A	86430711	G	A	86430711	3	1	348	1	0	0	0	0	1	0	0	0	3713	1348	47	4	2798	4	COL24A1	1	86430711	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09	8092011	86430711	162819910	4	38088										
CENPF	0	genome.wustl.edu	37	chr1	214818057	214818057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	aataactgagactggtgcagTgaaacccacaggagagtgct	12	8	0	3			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	1	214818057	214818057	T	C	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.5144	p.V1715A	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	62	0	0	66	21	24.14	-	-	-	C	214818057	T	C	214818057	3	2	348	1	0	0	0	0	1	0	0	0	3260	1696	59	5	5190	5	CENPF	1	214818057	Missense_Mutation	SNP	T	TCGA-AO-A12G-01A-11D-A10M-09	128387346	214818057	34432564	5	38089										
ERBB4	0	genome.wustl.edu	37	chr2	212289007	212289007	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	ggttttcctccaaaggtcatCagttcccatatagtaactcc	6	12	2	0			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	2	212289007	212289007	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	silent	c.2739	p.L913	0.998	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	177	0	0	126	63	33.33	-	-	-	T	212289007	C	T	212289007	2	4	348	1	0	0	0	0	0	0	0	1	5246	813	29	2		2	ERBB4	2	212289007	Silent	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09		212289007	30910366	6	38090										
DOCK10	0	genome.wustl.edu	37	chr2	225651833	225651833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gatatgaccgatgaatgtcgTagtagagatctgacaatttc	10	6	1	4			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	2	225651833	225651833	T	C	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.5561	p.Y1854C	0.999	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	88	0	0	80	46	35.94	-	-	-	C	225651833	T	C	225651833	3	2	348	1	0	0	0	0	1	0	0	0	4720	1638	57	5	1027	5	DOCK10	2	225651833	Missense_Mutation	SNP	T	TCGA-AO-A12G-01A-11D-A10M-09	13362826	225651833	17547540	7	38091										
MUC20	0	genome.wustl.edu	37	chr3	195452689	195452689	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tcatggtccccgggatctgaCgtcactctcctcgctgaagc	10	15	4	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	3	195452689	195452689	C	T	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	silent	c.1215	p.D405	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	9	0	0	6	8	57.14	-	-	-	T	195452689	C	T	195452689	2	4	348	1	0	0	0	0	0	0	0	1	10048	535	19	1		1	MUC20	3	195452689	Silent	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09		195452689	2569741	8	38092										
MUC4	0	genome.wustl.edu	37	chr3	195507020	195507020	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tactgaggaaaggctggtgaCaggaagaggggtggcctgac	18	6	0	4			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	3	195507020	195507020	C	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11431	p.V3811L	0.834	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	39	0	0	93	11	10.48	-	-	-	G	195507020	C	G	195507020	3	3	348	1	0	0	0	0	1	0	0	0	10050	478	17	4		4	MUC4	3	195507020	Missense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09	54331	195507020	2515410	9	38093										
ZNF131	0	genome.wustl.edu	37	chr5	43161509	43161509	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	agagattgccgaaggcaccaTtgaagtggaagatgaaggca	14	6	0	4			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	5	43161509	43161509	T	C	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.530	p.I177T	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	107	0	0	85	43	33.33	-	-	-	C	43161509	T	C	43161509	3	2	348	1	0	0	0	0	1	0	0	0	17817	1493	52	5	544	5	ZNF131	5	43161509	Missense_Mutation	SNP	T	TCGA-AO-A12G-01A-11D-A10M-09		43161509	137753751	10	38094										
CASP8AP2	0	genome.wustl.edu	37	chr6	90564540	90564540	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gtttgtttgtttttagacagCgcttccaaatcctgtgtacc	8	9	0	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	6	90564540	90564540	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	133	0	0	119	44	26.99	-	-	-	T	90564540	C	T	90564540	1	4	348	0	1	0	0	0	0	0	0	0	2703	767	27	1		1	CASP8AP2	6	90564540	RNA	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09		90564540	80550527	11	38095										
GLI3	0	genome.wustl.edu	37	chr7	42084998	42084998	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cttactatccatagcatgaaGatattccatgtggatggccc	8	10	0	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	7	42084998	42084998	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.811	p.L271F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	16	0	0	55	27	32.93	-	-	-	A	42084998	G	A	42084998	3	1	348	1	0	0	0	0	1	0	0	0	6491	942	33	2	3971	2	GLI3	7	42084998	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		42084998	117053665	12	38096			1	67		2	2	94	G		9.612948e-05
GLI3	0	genome.wustl.edu	37	chr7	42085091	42085091	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gccagttagcagggccatctGatgatagtattctgctgggc	13	9	2	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	7	42085091	42085091	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	nonsense	c.718	p.Q240*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	20	0	0	51	32	38.55	-	-	-	A	42085091	G	A	42085091	4	1	348	1	0	0	0	0	0	1	0	0	6491	1299	45	2	4064	2	GLI3	7	42085091	Nonsense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09	93	42085091	117053572	13	38097			1	67		2	2	94	G		9.612948e-05
EGFR	0	genome.wustl.edu	37	chr7	55221773	55221773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cactcatgctctacaaccccAccacgtaccagatggatgtg	7	15	2	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	7	55221773	55221773	A	G	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	missense	c.817	p.T273A	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	46	0	0	42	20	32.26	-	-	-	G	55221773	A	G	55221773	3	3	348	1	0	0	0	0	1	0	0	0	5002	159	6	5	843	5	EGFR	7	55221773	Missense_Mutation	SNP	A	TCGA-AO-A12G-01A-11D-A10M-09	13136682	55221773	103916890	14	38098										
WDR60	0	genome.wustl.edu	37	chr7	158716295	158716295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gcttgagccctttgaaagcaTttttactgtttgccggaaca	9	9	0	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	7	158716295	158716295	T	C	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	missense	c.2128	p.F710L	0.978	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	74	0	0	69	32	31.68	-	-	-	C	158716295	T	C	158716295	3	2	348	1	0	0	0	0	1	0	0	0	17408	1493	52	5	2194	5	WDR60	7	158716295	Missense_Mutation	SNP	T	TCGA-AO-A12G-01A-11D-A10M-09	103494522	158716295	422368	15	38099										
NECAB1	0	genome.wustl.edu	37	chr8	91937790	91937790	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	ccagccaagccagaagtcctGtcgattcaatggcctggaaa	10	12	1	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	8	91937790	91937790	G	A	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	silent	c.522	p.L174	0.998	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	42	0	0	37	63	63	-	-	-	A	91937790	G	A	91937790	2	1	348	1	0	0	0	0	0	0	0	1	10376	1364	48	4		4	NECAB1	8	91937790	Silent	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		91937790	54426232	16	38100										
KIAA1432	0	genome.wustl.edu	37	chr9	5774097	5774097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	aacagactagcccccgggcaGaggagagcaggggctcctcc	14	14	0	3			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	9	5774097	5774097	G	C	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.3886	p.E1296Q	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	38	0	0	39	15	27.78	-	-	-	C	5774097	G	C	5774097	3	2	348	1	0	0	0	0	1	0	0	0	8285	943	33	2	4058	2	KIAA1432	9	5774097	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		5774097	135439334	17	38101										
MTAP	0	genome.wustl.edu	37	chr9	21818104	21818104	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	acatctgggctttgaaggaaGagggctgtacacatgtcata	12	7	2	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	9	21818104	21818104	G	A	SNP	MTAP	ENST00000380172	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	1.000	pfam_Nucleoside_phosphorylase_d,tigrfam_MeThioAdo_phosphorylase	pfam_Nucleoside_phosphorylase_d,tigrfam_MeThioAdo_phosphorylase	-	no_errors	MTAP	HGNC	ENSG00000099810	43	0	0	44	29	39.73	-	-	-	A	21818104	G	A	21818104	3	1	348	1	0	0	0	0	1	0	0	0	9983	943	33	2	264	2	MTAP	9	21818104	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09	16044007	21818104	119395327	18	38102										
KIAA1045	0	genome.wustl.edu	37	chr9	34978067	34978067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tcctctacatcctggctgctCgccccaacagcgcagccatt	7	18	1	0			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	9	34978067	34978067	C	T	SNP	KIAA1045	ENST00000242315	human	ensembl	69_37n	1	known	missense	c.1162	p.R388C	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733	33	0	0	29	21	42	-	-	-	T	34978067	C	T	34978067	3	4	348	1	0	0	0	0	1	0	0	0	8259	884	31	1	1188	1	KIAA1045	9	34978067	Missense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09	13159963	34978067	106235364	19	38103										
OR1L4	0	genome.wustl.edu	37	chr9	125486770	125486770	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tgctacttatgtctcgcttgTctttctgtgcctctcacatc	6	13	4	0			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	9	125486770	125486770	T	C	SNP	OR1L4	ENST00000259466	human	ensembl	69_37n	1	known	missense	c.502	p.S168P	0.972	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1L4	HGNC	ENSG00000136939	69	0	0	67	43	39.09	-	-	-	C	125486770	T	C	125486770	3	2	348	1	0	0	0	0	1	0	0	0	11038	1667	58	5	504	5	OR1L4	9	125486770	Missense_Mutation	SNP	T	TCGA-AO-A12G-01A-11D-A10M-09	90508703	125486770	15726661	20	38104										
PTEN	0	genome.wustl.edu	37	chr10	89653842	89653842	+	Frame_Shift_Del	DEL	G	G	-													0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	aagacttgaaggcgtatacaGgaacaatattgatgatgtag							TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	10	89653842	89653842	G	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.140	p.N48fs	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	293	0	0	120	112	47.26	-	-	-	-	89653842	G	-	89653842	7	5	348	1	0	1	0	1	0	0	0	0	12818	1000	35	0	146	0	PTEN	10	89653842	Frame_Shift_Del	DEL	G	TCGA-AO-A12G-01A-11D-A10M-09		89653842	45880905	21	38105										
ATHL1	0	genome.wustl.edu	37	chr11	293153	293153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	ctgagcaccatcttggacttGtgtgtccaggagtcatgtcc	11	11	2	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	11	293153	293153	G	T	SNP	ATHL1	ENST00000409479	human	ensembl	69_37n	1	novel	missense	c.1342	p.V448L	0.000	superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	35	0	0	14	20	58.82	-	-	-	T	293153	G	T	293153	3	4	348	1	0	0	0	0	1	0	0	0	1108	1392	48	4		4	ATHL1	11	293153	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		293153	134713363	22	38106										
ATG2A	0	genome.wustl.edu	37	chr11	64665325	64665325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gcctacctgaagtagatgggCtgctggtcaggaggggaggg	19	7	1	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	11	64665325	64665325	C	T	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.4390	p.A1464T	1.000	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	9	0	0	4	5	55.56	-	-	-	T	64665325	C	T	64665325	3	4	348	1	0	0	0	0	1	0	0	0	1097	796	28	4	864	4	ATG2A	11	64665325	Missense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09	64372172	64665325	70341191	23	38107										
KIAA0430	0	genome.wustl.edu	37	chr16	15718667	15718667	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gcgagcagaggactgacttgCctggatgcaactaacttgct	12	10	0	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	16	15718667	15718667	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	silent	c.2229	p.R743	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	71	0	0	70	25	26.32	-	-	-	T	15718667	C	T	15718667	2	4	348	1	0	0	0	0	0	0	0	1	8229	738	26	4		4	KIAA0430	16	15718667	Silent	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09		15718667	74636086	24	38108										
DNAH3	0	genome.wustl.edu	37	chr16	20996971	20996971	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	actttctggcttgaaataatCtccaaagaagaggcttcgaa	8	8	2	3			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	16	20996971	20996971	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.7093	p.D2365N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	53	0	0	35	23	39.66	-	-	-	T	20996971	C	T	20996971	3	4	348	1	0	0	0	0	1	0	0	0	4639	913	32	2	5316	2	DNAH3	16	20996971	Missense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09	5278304	20996971	69357782	25	38109										
CCDC144A	0	genome.wustl.edu	37	chr17	16638032	16638032	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	taggcatcagaaagaaaaggAtctctttcatgaagattgca	9	6	3	4			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	17	16638032	16638032	A	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.2447	p.D816V	1.000	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	63	0	0	20	33	62.26	-	-	-	T	16638032	A	T	16638032	3	4	348	1	0	0	0	0	1	0	0	0	2802	333	12	5	2493	5	CCDC144A	17	16638032	Missense_Mutation	SNP	A	TCGA-AO-A12G-01A-11D-A10M-09		16638032	64557178	26	38110										
KCNJ12	0	genome.wustl.edu	37	chr17	21319007	21319007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cctggagccggctgagggccGgggccgcacaccctgtgtga	17	14	0	2			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	17	21319007	21319007	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	missense	c.353	p.R118Q	0.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	11	0	0	12	8	40	-	-	-	A	21319007	G	A	21319007	3	1	348	1	0	0	0	0	1	0	0	0	8100	1116	39	1	355	1	KCNJ12	17	21319007	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09	4680975	21319007	59876203	27	38111										
KIF2B	0	genome.wustl.edu	37	chr17	51900732	51900732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	cagggaccagcgtaccgccaCgaaatgggttgcgatgatcc	13	12	0	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	17	51900732	51900732	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.338	p.T113M	0.003	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	21	0	0	14	11	42.31	-	-	-	T	51900732	C	T	51900732	3	4	348	1	0	0	0	0	1	0	0	0	8350	536	19	1	340	1	KIF2B	17	51900732	Missense_Mutation	SNP	C	TCGA-AO-A12G-01A-11D-A10M-09	30581725	51900732	29294478	28	38112										
DSG1	0	genome.wustl.edu	37	chr18	28926019	28926019	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	aggaggagagagaatgacagGatttgaactaacagagggag	16	3	0	5			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	18	28926019	28926019	G	C	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	1	known	missense	c.1958	p.G653A	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	209	0	0	142	89	38.03	-	-	-	C	28926019	G	C	28926019	3	2	348	1	0	0	0	0	1	0	0	0	4811	1174	41	2	2012	2	DSG1	18	28926019	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		28926019	49151229	29	38113										
ZNF329	0	genome.wustl.edu	37	chr19	58639594	58639594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	gacactggttgcagccatagGgcttctcgccagtatgaatc	11	11	1	1			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	19	58639594	58639594	G	A	SNP	ZNF329	ENST00000358067	human	ensembl	69_37n	-1	known	missense	c.1277	p.P426L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894	44	0	0	54	68	55.74	-	-	-	A	58639594	G	A	58639594	3	1	348	1	0	0	0	0	1	0	0	0	17943	1232	43	4	352	4	ZNF329	19	58639594	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		58639594	489389	30	38114										
BMP15	0	genome.wustl.edu	37	chrX	50659109	50659109	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	tggcatggcacttcatccttGgacattgccttcttgttact	8	11	2	0			TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	X	50659109	50659109	G	C	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	1	known	missense	c.681	p.L227F	0.004	NULL	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	75	0	0	64	43	40.19	-	-	-	C	50659109	G	C	50659109	3	2	348	1	0	0	0	0	1	0	0	0	1463	1339	47	4	687	4	BMP15	23	50659109	Missense_Mutation	SNP	G	TCGA-AO-A12G-01A-11D-A10M-09		50659109	104611451	31	38115										
DIAPH2	0	genome.wustl.edu	37	chrX	95993750	95993751	+	Frame_Shift_Ins	INS	-	-	A													0.1875	6	0.154014681113441	2.26927784577723	1.79651162790698	2.3953488372093	0.0800865800865801	0.5224358974359	0	ggaagtattggatctctttgINSaaaaaatgatggtaagttat							TCGA-AO-A12G-01A-11D-A10M-09	TCGA-AO-A12G-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b9d3741-2aa3-489b-93e6-3b5376b80d48	8da3bacc-e61b-431b-a25f-d70d4c8dbe23	X	95993750	95993751	-	A	INS	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	frame_shift_ins	c.331_332	p.M113fs	1.000:1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	174	0	0	129	38	22.75	-	-	-	A	95993751	-	A	95993750	7	5	348	1	0	1	1	0	0	0	0	0	4555	1291	45	0	341	0	DIAPH2	23	95993750	Frame_Shift_Ins	INS	-	TCGA-AO-A12G-01A-11D-A10M-09	45334641	95993750	59276810	32	38116										
WDR26	0	genome.wustl.edu	37	chr1	224607232	224607232	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	actcttactctgaagtttatCcaatagtttagatcgggaag	8	7	2	2			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	1	224607232	224607232	C	A	SNP	WDR26	ENST00000414423	human	ensembl	69_37n	-1	known	missense	c.850	p.D284Y	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923	214	1	0.47	123	94	43.12	-	-	-	A	224607232	C	A	224607232	3	1	349	1	0	0	0	0	1	0	0	0	17380	855	30	2	1175	2	WDR26	1	224607232	Missense_Mutation	SNP	C	TCGA-AO-A12H-01A-11D-A10Y-09		224607232	24643389	1	38117										
DNAH11	0	genome.wustl.edu	37	chr7	21639512	21639512	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	ttttttcaggctataatgcaCgacttagacttctttctgaa	6	8	3	2			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	7	21639512	21639512	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.2775	p.H925	0.995	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	271	0	0	163	92	36.08	-	-	-	T	21639512	C	T	21639512	2	4	349	1	0	0	0	0	0	0	0	1	4635	535	19	1		1	DNAH11	7	21639512	Silent	SNP	C	TCGA-AO-A12H-01A-11D-A10Y-09		21639512	137499151	2	38118										
FOXD4L5	0	genome.wustl.edu	37	chr9	70177977	70177977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	agggcgctcagctcttggcaGgttcatggaggagcaggtgc	17	9	3	0			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	9	70177977	70177977	G	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	69_37n	-1	known	missense	c.7	p.L3M	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779	8	0	0	17	17	50	-	-	-	T	70177977	G	T	70177977	3	4	349	1	0	0	0	0	1	0	0	0	6050	991	35	4	1247	4	FOXD4L5	9	70177977	Missense_Mutation	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09		70177977	71035454	3	38119										
CAPRIN1	0	genome.wustl.edu	37	chr11	34113522	34113522	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	taaaacagcaaaatcagtacCaggccagttataaccagagc	7	10	1	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	11	34113522	34113522	C	G	SNP	CAPRIN1	ENST00000341394	human	ensembl	69_37n	1	known	missense	c.1624	p.Q542E	1.000	pfam_Caprin-1_C	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	160	0	0	112	73	39.25	-	-	-	G	34113522	C	G	34113522	3	3	349	1	0	0	0	0	1	0	0	0	2660	595	21	4	1678	4	CAPRIN1	11	34113522	Missense_Mutation	SNP	C	TCGA-AO-A12H-01A-11D-A10Y-09		34113522	100892994	4	38120										
KDM4D	0	genome.wustl.edu	37	chr11	94730906	94730906	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	atttcgaagatttggagcgaAaatactggaagaaccgcatc	10	7	0	2			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	11	94730906	94730906	A	T	SNP	KDM4D	ENST00000335080	human	ensembl	69_37n	1	known	nonsense	c.370	p.K124*	0.770	NULL	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280	81	0	0	67	38	36.19	-	-	-	T	94730906	A	T	94730906	4	4	349	1	0	0	0	0	0	1	0	0	8185	15	1	5	372	5	KDM4D	11	94730906	Nonsense_Mutation	SNP	A	TCGA-AO-A12H-01A-11D-A10Y-09	60617384	94730906	40275610	5	38121										
ERC1	0	genome.wustl.edu	37	chr12	1289751	1289751	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	gagacaaggaaaagcagatgAgcagcttgaaagaacgggtc	14	6	0	5			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	1289751	1289751	A	T	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.1783	p.S595C	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	124	0	0	128	52	28.89	-	-	-	T	1289751	A	T	1289751	3	4	349	1	0	0	0	0	1	0	0	0	5247	304	11	5	1813	5	ERC1	12	1289751	Missense_Mutation	SNP	A	TCGA-AO-A12H-01A-11D-A10Y-09		1289751	132562144	6	38122										
DPPA3	0	genome.wustl.edu	37	chr12	7867799	7867799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	gggcctctcaaatctcctccGagacgttgataaagaacctt	8	12	2	3			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	7867799	7867799	G	A	SNP	DPPA3	ENST00000345088	human	ensembl	69_37n	1	known	missense	c.103	p.E35K	0.028	NULL	NULL	-	no_errors	DPPA3	HGNC	ENSG00000187569	158	0	0	118	68	36.56	-	-	-	A	7867799	G	A	7867799	3	1	349	1	0	0	0	0	1	0	0	0	4770	1059	37	1	109	1	DPPA3	12	7867799	Missense_Mutation	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09	6578048	7867799	125984096	7	38123										
DIP2B	0	genome.wustl.edu	37	chr12	51133229	51133229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	ccatacagccagcggctactAcaccatctatgatagcgaga	8	13	1	2			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	51133229	51133229	A	C	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.4214	p.Y1405S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	88	0	0	89	82	47.95	-	-	-	C	51133229	A	C	51133229	3	2	349	1	0	0	0	0	1	0	0	0	4564	391	14	5	4356	5	DIP2B	12	51133229	Missense_Mutation	SNP	A	TCGA-AO-A12H-01A-11D-A10Y-09	43265430	51133229	82718666	8	38124										
RYR3	0	genome.wustl.edu	37	chr15	34078003	34078003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	tcatcgaggtgatcttacccAtgctctgcaactacttgtcc	7	13	3	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	15	34078003	34078003	A	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.9409	p.M3137V	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	40	0	0	76	44	36.67	-	-	-	G	34078003	A	G	34078003	3	3	349	1	0	0	0	0	1	0	0	0	13856	217	8	5	9671	5	RYR3	15	34078003	Missense_Mutation	SNP	A	TCGA-AO-A12H-01A-11D-A10Y-09		34078003	68453389	9	38125										
SALL1	0	genome.wustl.edu	37	chr16	51175176	51175176	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	gaactgctctgaggtagctgGattgggggtagctgtttcac	15	7	2	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	16	51175176	51175176	G	A	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	silent	c.957	p.I319	0.681	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	64	0	0	109	48	30.57	-	-	-	A	51175176	G	A	51175176	2	1	349	1	0	0	0	0	0	0	0	1	13896	1164	41	2		2	SALL1	16	51175176	Silent	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09		51175176	39179577	10	38126										
PHLPP2	0	genome.wustl.edu	37	chr16	71701217	71701217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	tcccagcatcagttttctaaGactcaagctactcagaattc	5	12	4	2			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	16	71701217	71701217	G	A	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.1648	p.L550F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	72	0	0	112	14	11.11	-	-	-	A	71701217	G	A	71701217	3	1	349	1	0	0	0	0	1	0	0	0	11929	942	33	2	2355	2	PHLPP2	16	71701217	Missense_Mutation	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09	20526041	71701217	18653536	11	38127										
MINK1	0	genome.wustl.edu	37	chr17	4788835	4788835	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	gggcagacggaacactttcaTtgggactccctactggatgg	13	10	1	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	4788835	4788835	T	A	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	missense	c.566	p.I189N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	118	0	0	116	69	36.9	-	-	-	A	4788835	T	A	4788835	3	1	349	1	0	0	0	0	1	0	0	0	9658	1493	52	5	331	5	MINK1	17	4788835	Missense_Mutation	SNP	T	TCGA-AO-A12H-01A-11D-A10Y-09		4788835	76406375	12	38128										
NF1	0	genome.wustl.edu	37	chr17	29562668	29562668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	tggttactctgtttgattctCggcatttactctaccaactg	7	10	3	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	29562668	29562668	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.3748	p.R1250W	1.000	superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	224	0	0	187	83	30.74	-	-	-	T	29562668	C	T	29562668	3	4	349	1	0	0	0	0	1	0	0	0	10428	875	31	1	3919	1	NF1	17	29562668	Missense_Mutation	SNP	C	TCGA-AO-A12H-01A-11D-A10Y-09	24773833	29562668	51632542	13	38129										
SLFN5	0	genome.wustl.edu	37	chr17	33592829	33592829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	aatccaggagtagccccaccGgctggggcctacaatcttct	10	14	2	0			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	33592829	33592829	G	A	SNP	SLFN5	ENST00000299977	human	ensembl	69_37n	1	known	silent	c.2598	p.P866	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN5	HGNC	ENSG00000166750	42	0	0	48	27	36	-	-	-	A	33592829	G	A	33592829	2	1	349	1	0	0	0	0	0	0	0	1	14826	1103	39	1		1	SLFN5	17	33592829	Silent	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09	4030161	33592829	47602381	14	38130										
SRRD	0	genome.wustl.edu	37	chr22	26884108	26884108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	cattgccagaggagtcagatGtggccactgattctatccca	10	11	2	3			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	22	26884108	26884108	G	A	SNP	SRRD	ENST00000215917	human	ensembl	69_37n	1	known	missense	c.364	p.V122M	0.000	NULL	pfam_SRR1-like	-	no_errors	SRRD	HGNC	ENSG00000100104	104	0	0	130	89	40.64	-	-	-	A	26884108	G	A	26884108	3	1	349	1	0	0	0	0	1	0	0	0	15258	1377	48	4	374	4	SRRD	22	26884108	Missense_Mutation	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09		26884108	24420458	15	38131										
USP9X	0	genome.wustl.edu	37	chrX	41084197	41084198	+	Frame_Shift_Ins	INS	-	-	A													0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	agttctcatctactgtcctcINSagtgaacttctctggcaggt							TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	X	41084197	41084198	-	A	INS	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	frame_shift_ins	c.6954_6955	p.S2318fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	354	0	0	210	130	38.24	-	-	-	A	41084198	-	A	41084197	7	5	349	1	0	1	1	0	0	0	0	0	17187	813	29	0	7108	0	USP9X	23	41084197	Frame_Shift_Ins	INS	-	TCGA-AO-A12H-01A-11D-A10Y-09		41084197	114186363	16	38132										
DCAF12L2	0	genome.wustl.edu	37	chrX	125299410	125299410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.623781676413255	0	0.701754385964912	1	1	0	ctgttggggttttcgccgccGgtggccagaagcgtcttgga	16	10	1	1			TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	X	125299410	125299410	G	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	69_37n	-1	known	silent	c.498	p.T166	0.039	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	17	0	0	85	55	39.29	-	-	-	A	125299410	G	A	125299410	2	1	349	1	0	0	0	0	0	0	0	1	4297	1103	39	1		1	DCAF12L2	23	125299410	Silent	SNP	G	TCGA-AO-A12H-01A-11D-A10Y-09	84215213	125299410	29971150	17	38133										
C1orf63	0	genome.wustl.edu	37	chr1	25572981	25572981	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ctgctccgcgacctcgtcctGgatctgtccctccatctgct							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	1	25572981	25572981	G	-	DEL	C1orf63	ENST00000417642	human	ensembl	69_37n	-1	known	frame_shift_del	c.453	p.R152fs	0.005	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616	42	0	0	10	2	16.67	-	-	-	-	25572981	G	-	25572981	7	5	350	1	0	1	0	1	0	0	0	0	2073	1335	47	0	414	0	C1orf63	1	25572981	Frame_Shift_Del	DEL	G	TCGA-AO-A1KO-01A-31D-A188-09		25572981	223677640	1	38134										
MFSD9	0	genome.wustl.edu	37	chr2	103340326	103340326	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	ccttctctggaaccacatcaGaaagtagagcccttgagatg							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	2	103340326	103340326	G	-	DEL	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	frame_shift_del	c.470	p.S157fs	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	48	0	0	9	2	18.18	-	-	-	-	103340326	G	-	103340326	7	5	350	1	0	1	0	1	0	0	0	0	9610	942	33	0	962	0	MFSD9	2	103340326	Frame_Shift_Del	DEL	G	TCGA-AO-A1KO-01A-31D-A188-09		103340326	139859047	2	38135										
MYO1B	0	genome.wustl.edu	37	chr2	192279367	192279367	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	atcaatgagctcacaaaatgAtggcttcttcgccgtccacc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	2	192279367	192279367	A	-	DEL	MYO1B	ENST00000304164	human	ensembl	69_37n	1	known	frame_shift_del	c.3131	p.D1044fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	60	0	0	13	2	13.33	-	-	-	-	192279367	A	-	192279367	7	5	350	1	0	1	0	1	0	0	0	0	10141	333	12	0	3241	0	MYO1B	2	192279367	Frame_Shift_Del	DEL	A	TCGA-AO-A1KO-01A-31D-A188-09	88939041	192279367	50920006	3	38136										
NUP210	0	genome.wustl.edu	37	chr3	13418986	13418986	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagaccttgttgctgaacttGtcaaaaacttcgatggtgat	9	7	1	3			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	13418986	13418986	G	A	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	silent	c.1122	p.D374	0.998	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	52	0	0	24	4	13.79	-	-	-	A	13418986	G	A	13418986	2	1	350	1	0	0	0	0	0	0	0	1	10833	1368	48	4		4	NUP210	3	13418986	Silent	SNP	G	TCGA-AO-A1KO-01A-31D-A188-09		13418986	184603444	4	38137										
WDR52	0	genome.wustl.edu	37	chr3	113010507	113010507	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caatctcctcctttaaggccGaaatcctttccgcctggagt	7	14	1	0			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	113010507	113010507	G	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	nonsense	c.5462	p.S1821*	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	117	0	0	23	4	14.81	-	-	-	T	113010507	G	T	113010507	4	4	350	1	0	0	0	0	0	1	0	0	17401	1059	37	3	106	3	WDR52	3	113010507	Nonsense_Mutation	SNP	G	TCGA-AO-A1KO-01A-31D-A188-09	99591521	113010507	85011923	5	38138										
LRIT3	0	genome.wustl.edu	37	chr4	110772968	110772968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgcacaataacaaaataaCcagtgtgccaaatgaggcgc	8	10	0	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	4	110772968	110772968	C	T	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	missense	c.290	p.T97I	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	73	0	0	29	4	12.12	-	-	-	T	110772968	C	T	110772968	3	4	350	1	0	0	0	0	1	0	0	0	9015	507	18	4	292	4	LRIT3	4	110772968	Missense_Mutation	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09		110772968	80381308	6	38139										
ZNF354C	0	genome.wustl.edu	37	chr5	178506093	178506093	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaacctcacatctgtaatgaAtgtgggaagagcttcaagca	9	8	3	2			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	5	178506093	178506093	A	G	SNP	ZNF354C	ENST00000315475	human	ensembl	69_37n	1	known	silent	c.660	p.E220	0.023	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932	46	0	0	27	4	12.9	-	-	-	G	178506093	A	G	178506093	2	3	350	1	0	0	0	0	0	0	0	1	17962	98	4	5		5	ZNF354C	5	178506093	Silent	SNP	A	TCGA-AO-A1KO-01A-31D-A188-09		178506093	2409167	7	38140										
SYNE1	0	genome.wustl.edu	37	chr6	152454589	152454589	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtcttgcaaagaggctactCtgagttgggattccaacagc	11	9	2	2			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	152454589	152454589	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.25823	p.R8608I	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	56	0	0	19	4	17.39	-	-	-	A	152454589	C	A	152454589	3	1	350	1	0	0	0	0	1	0	0	0	15537	913	32	2	586	2	SYNE1	6	152454589	Missense_Mutation	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09		152454589	18660478	8	38141										
SMOC2	0	genome.wustl.edu	37	chr6	168910728	168910728	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcaacgtgccaagtgcaaagAtccccagctagagattgcat	9	11	1	2			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	168910728	168910728	A	T	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.218	p.D73V	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	85	0	0	34	4	10.53	-	-	-	T	168910728	A	T	168910728	3	4	350	1	0	0	0	0	1	0	0	0	14891	333	12	5	224	5	SMOC2	6	168910728	Missense_Mutation	SNP	A	TCGA-AO-A1KO-01A-31D-A188-09	16456139	168910728	2204339	9	38142										
TNS3	0	genome.wustl.edu	37	chr7	47408710	47408710	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctggctgctcttgtggcaGgtgaagggacccaggtgggc	17	9	2	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	47408710	47408710	G	C	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.1533	p.T511	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	44	0	0	17	4	19.05	-	-	-	C	47408710	G	C	47408710	2	2	350	1	0	0	0	0	0	0	0	1	16439	987	35	4		4	TNS3	7	47408710	Silent	SNP	G	TCGA-AO-A1KO-01A-31D-A188-09		47408710	111729953	10	38143										
OSR2	0	genome.wustl.edu	37	chr8	99963879	99963880	+	Frame_Shift_Del	DEL	TG	TG	-													0	0	1	0	0	0	1	1	0	gcaaagtgttcaggcgaaacTgtgatctgcggcggcacagc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	8	99963879	99963880	TG	-	DEL	OSR2	ENST00000457907	human	ensembl	69_37n	1	known	frame_shift_del	c.1252_1253	p.C418fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	46	0	0	15	2	11.76	-	-	-	-	99963880	TG	-	99963879	7	5	350	1	0	1	0	1	0	0	0	0	11367	1580	55	0	899	0	OSR2	8	99963879	Frame_Shift_Del	DEL	TG	TCGA-AO-A1KO-01A-31D-A188-09		99963879	46400143	11	38144										
CAMK1D	0	genome.wustl.edu	37	chr10	12391854	12391854	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	gcgagagcagctcctcctggAaaaagcaagctgaagacatc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	10	12391854	12391854	A	-	DEL	CAMK1D	ENST00000378847	human	ensembl	69_37n	1	known	frame_shift_del	c.37	p.K14fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049	9	0	0	6	2	25	-	-	-	-	12391854	A	-	12391854	7	5	350	1	0	1	0	1	0	0	0	0	2622	247	9	0	39	0	CAMK1D	10	12391854	Frame_Shift_Del	DEL	A	TCGA-AO-A1KO-01A-31D-A188-09		12391854	123142893	12	38145										
OSBPL5	0	genome.wustl.edu	37	chr11	3115043	3115043	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcccgagatctggttgatgCtggtgctacccccgaagaag	12	11	1	3			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	3115043	3115043	C	A	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	missense	c.1742	p.S581I	0.471	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	49	0	0	26	4	13.33	-	-	-	A	3115043	C	A	3115043	3	1	350	1	0	0	0	0	1	0	0	0	11353	797	28	4	925	4	OSBPL5	11	3115043	Missense_Mutation	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09		3115043	131891473	13	38146										
NFRKB	0	genome.wustl.edu	37	chr11	129751713	129751713	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagctgttgagggagctggcTggcgatgactgccaatccaa	14	10	0	2			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	129751713	129751713	T	A	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	silent	c.1302	p.P434	0.422	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	34	0	0	10	4	28.57	-	-	-	A	129751713	T	A	129751713	2	1	350	1	0	0	0	0	0	0	0	1	10456	1567	55	5		5	NFRKB	11	129751713	Silent	SNP	T	TCGA-AO-A1KO-01A-31D-A188-09	126636670	129751713	5254803	14	38147										
ADCY6	0	genome.wustl.edu	37	chr12	49167398	49167398	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcaggaagacagagctggcCaagagactcagcagcatgtt	13	9	1	3			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	12	49167398	49167398	C	T	SNP	ADCY6	ENST00000307885	human	ensembl	69_37n	-1	known	silent	c.2475	p.L825	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233	46	0	0	24	4	14.29	-	-	-	T	49167398	C	T	49167398	2	4	350	1	0	0	0	0	0	0	0	1	298	593	21	4		4	ADCY6	12	49167398	Silent	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09		49167398	84684497	15	38148										
USPL1	0	genome.wustl.edu	37	chr13	31231753	31231753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagaagctgcctgccttccActtaaaaagactaatgacca	6	11	0	3			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	31231753	31231753	A	G	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	silent	c.1539	p.P513	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	83	0	0	29	4	12.12	-	-	-	G	31231753	A	G	31231753	2	3	350	1	0	0	0	0	0	0	0	1	17189	146	6	5		5	USPL1	13	31231753	Silent	SNP	A	TCGA-AO-A1KO-01A-31D-A188-09		31231753	83938125	16	38149										
ZIC5	0	genome.wustl.edu	37	chr13	100622505	100622505	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	atgtggttgatgagcttgtaTttggccttgaagggcttgcc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	100622505	100622505	T	-	DEL	ZIC5	ENST00000267294	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1425	p.K475fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800	52	0	0	14	2	12.5	-	-	-	-	100622505	T	-	100622505	7	5	350	1	0	1	0	1	0	0	0	0	17778	1490	52	0	574	0	ZIC5	13	100622505	Frame_Shift_Del	DEL	T	TCGA-AO-A1KO-01A-31D-A188-09	69390752	100622505	14547373	17	38150										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562919	32562919	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	cagatatagattagatttggAaggaaatgagtatcctattc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	32562919	32562919	A	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	frame_shift_del	c.3044	p.G1016fs	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	56	0	0	16	2	11.11	-	-	-	-	32562919	A	-	32562919	7	5	350	1	0	1	0	1	0	0	0	0	888	246	9	0	3046	0	ARHGAP5	14	32562919	Frame_Shift_Del	DEL	A	TCGA-AO-A1KO-01A-31D-A188-09		32562919	74786621	18	38151										
AKAP6	0	genome.wustl.edu	37	chr14	33014845	33014845	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	actgggggtgtcatcatcttCaggagaagctctgacaaatg							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	33014845	33014845	C	-	DEL	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	frame_shift_del	c.986	p.S329fs	0.001	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	41	0	0	12	2	14.29	-	-	-	-	33014845	C	-	33014845	7	5	350	1	0	1	0	1	0	0	0	0	455	838	29	0	996	0	AKAP6	14	33014845	Frame_Shift_Del	DEL	C	TCGA-AO-A1KO-01A-31D-A188-09	451926	33014845	74334695	19	38152										
PYGL	0	genome.wustl.edu	37	chr14	51398401	51398401	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	gctcacacacctgccatccaTctcggatcttctgattgaaa							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	51398401	51398401	T	-	DEL	PYGL	ENST00000216392	human	ensembl	69_37n	-1	known	frame_shift_del	c.518	p.D173fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504	45	0	0	13	2	13.33	-	-	-	-	51398401	T	-	51398401	7	5	350	1	0	1	0	1	0	0	0	0	12944	1435	50	0	2093	0	PYGL	14	51398401	Frame_Shift_Del	DEL	T	TCGA-AO-A1KO-01A-31D-A188-09	18383556	51398401	55951139	20	38153										
ENTPD5	0	genome.wustl.edu	37	chr14	74442670	74442670	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagcttataagtgctgttaaAcatctcaaaggaagtgaggt	11	5	1	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	74442670	74442670	A	G	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.691	p.F231L	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	56	0	0	33	4	10.81	-	-	-	G	74442670	A	G	74442670	3	3	350	1	0	0	0	0	1	0	0	0	5179	43	2	5	623	5	ENTPD5	14	74442670	Missense_Mutation	SNP	A	TCGA-AO-A1KO-01A-31D-A188-09	23044269	74442670	32906870	21	38154										
RYR3	0	genome.wustl.edu	37	chr15	33962709	33962709	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	tttacaaaatcaaaggcccaCccaagccagagaaggagcag							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	33962709	33962709	C	-	DEL	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	frame_shift_del	c.5812	p.K1939fs	0.932	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	72	0	0	18	2	10	-	-	-	-	33962709	C	-	33962709	7	5	350	1	0	1	0	1	0	0	0	0	13856	507	18	0	5962	0	RYR3	15	33962709	Frame_Shift_Del	DEL	C	TCGA-AO-A1KO-01A-31D-A188-09		33962709	68568683	22	38155										
WDR72	0	genome.wustl.edu	37	chr15	54025306	54025306	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	tgatgctgtggggaggggccTtctgtccccagagtgccact							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	54025306	54025306	T	-	DEL	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	frame_shift_del	c.41	p.K14fs	0.944	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	69	0	0	11	2	15.38	-	-	-	-	54025306	T	-	54025306	7	5	350	1	0	1	0	1	0	0	0	0	17419	1609	56	0	3343	0	WDR72	15	54025306	Frame_Shift_Del	DEL	T	TCGA-AO-A1KO-01A-31D-A188-09	20062597	54025306	48506086	23	38156										
ZSCAN2	0	genome.wustl.edu	37	chr15	85164374	85164374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagtgtggcaagagcttcagCaggagtcccaacctcattgc	12	11	2	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	85164374	85164374	C	T	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	silent	c.948	p.S316	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	60	0	0	16	4	20	-	-	-	T	85164374	C	T	85164374	2	4	350	1	0	0	0	0	0	0	0	1	18323	709	25	4		4	ZSCAN2	15	85164374	Silent	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09	31139068	85164374	17367018	24	38157										
AEN	0	genome.wustl.edu	37	chr15	89169536	89169536	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	cttcggaagaggcacaagagAaggagccgacagcaccagcg							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	89169536	89169536	A	-	DEL	AEN	ENST00000379231	human	ensembl	69_37n	1	known	frame_shift_del	c.96	p.R33fs	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026	18	0	0	5	2	28.57	-	-	-	-	89169536	A	-	89169536	7	5	350	1	0	1	0	1	0	0	0	0	351	243	9	0	98	0	AEN	15	89169536	Frame_Shift_Del	DEL	A	TCGA-AO-A1KO-01A-31D-A188-09	4005162	89169536	13361856	25	38158										
ZNF337	0	genome.wustl.edu	37	chr20	25666719	25666720	+	Frame_Shift_Del	DEL	GG	GG	-													0	0	1	0	0	0	1	1	0	cagcagcctccattccttctGggtgaaatccacagtgacat							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	20	25666719	25666720	GG	-	DEL	ZNF337	ENST00000252979	human	ensembl	69_37n	-1	known	frame_shift_del	c.67_66	p.Q23fs	0.001:0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	24	0	0	6	2	25	-	-	-	-	25666720	GG	-	25666719	7	5	350	1	0	1	0	1	0	0	0	0	17949	1357	47	0	2200	0	ZNF337	20	25666719	Frame_Shift_Del	DEL	GG	TCGA-AO-A1KO-01A-31D-A188-09		25666719	37358801	26	38159										
ASPHD2	0	genome.wustl.edu	37	chr22	26829760	26829761	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	cgggactgcgacaccaccgcINStgtcatcactgtggcctgcc							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	26829760	26829761	-	T	INS	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	frame_shift_ins	c.179_180	p.V61fs	0.889:0.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	43	0	0	9	2	18.18	-	-	-	T	26829761	-	T	26829760	7	5	350	1	0	1	1	0	0	0	0	0	1059	797	28	0	181	0	ASPHD2	22	26829760	Frame_Shift_Ins	INS	-	TCGA-AO-A1KO-01A-31D-A188-09		26829760	24474806	27	38160										
EWSR1	0	genome.wustl.edu	37	chr22	29694768	29694768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gggacccatgggtcgcatggGaggccgtggaggagatagag	20	7	0	2			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	29694768	29694768	G	A	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	missense	c.1478	p.G493E	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	95	0	0	34	4	10.53	-	-	-	A	29694768	G	A	29694768	3	1	350	1	0	0	0	0	1	0	0	0	5332	1174	41	2	1634	2	EWSR1	22	29694768	Missense_Mutation	SNP	G	TCGA-AO-A1KO-01A-31D-A188-09	2865008	29694768	21609798	28	38161										
WWC3	0	genome.wustl.edu	37	chrX	10046872	10046872	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcaacaaatacaaagtatgAcccacaccaaattaaagcag	4	10	1	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	10046872	10046872	A	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.254	p.D85G	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	87	0	0	28	4	12.5	-	-	-	G	10046872	A	G	10046872	3	3	350	1	0	0	0	0	1	0	0	0	17510	275	10	5	264	5	WWC3	23	10046872	Missense_Mutation	SNP	A	TCGA-AO-A1KO-01A-31D-A188-09		10046872	145223688	29	38162										
TLR7	0	genome.wustl.edu	37	chrX	12905869	12905869	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attttctacaagatgccttcCagttgcgatatctggatctc	7	10	3	1			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	12905869	12905869	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	nonsense	c.2242	p.Q748*	0.602	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	70	0	0	32	4	11.11	-	-	-	T	12905869	C	T	12905869	4	4	350	1	0	0	0	0	0	1	0	0	16051	595	21	4	2248	4	TLR7	23	12905869	Nonsense_Mutation	SNP	C	TCGA-AO-A1KO-01A-31D-A188-09	2858997	12905869	142364691	30	38163										
HCFC1	0	genome.wustl.edu	37	chrX	153236144	153236145	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	actattccctcgttgccgccINSgccaaacaccacgatgagct							TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	153236144	153236145	-	A	INS	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	frame_shift_ins	c.148_147	p.G49fs	1.000:0.968	pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	63	0	0	12	2	14.29	-	-	-	A	153236145	-	A	153236144	7	5	350	1	0	1	1	0	0	0	0	0	7042	652	23	0	6063	0	HCFC1	23	153236144	Frame_Shift_Ins	INS	-	TCGA-AO-A1KO-01A-31D-A188-09	140330275	153236144	2034416	31	38164										
KIF1B	0	genome.wustl.edu	37	chr1	10386254	10386254	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ccacggccgattccgacatcActgagctggctgacgagcag	12	14	1	2			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	10386254	10386254	A	G	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.2623	p.T875A	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	86	0	0	6	49	87.5	-	-	-	G	10386254	A	G	10386254	3	3	351	1	0	0	0	0	1	0	0	0	8336	159	6	5	4206	5	KIF1B	1	10386254	Missense_Mutation	SNP	A	TCGA-AO-A1KP-01A-11D-A13L-09		10386254	238864367	1	38165										
RBBP5	0	genome.wustl.edu	37	chr1	205073004	205073004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ccttgccttttgcgtttcccGtataaatatattcccctcgc	5	14	0	0			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	205073004	205073004	G	A	SNP	RBBP5	ENST00000264515	human	ensembl	69_37n	-1	known	missense	c.503	p.T168M	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222	127	0	0	155	58	27.23	-	-	-	A	205073004	G	A	205073004	3	1	351	1	0	0	0	0	1	0	0	0	13185	1145	40	1	1153	1	RBBP5	1	205073004	Missense_Mutation	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09	194686750	205073004	44177617	2	38166										
DYRK3	0	genome.wustl.edu	37	chr1	206810308	206810308	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	caccagaaaatgaagtggaaAgagaagtaaattcaatacat	8	5	1	3			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	206810308	206810308	A	G	SNP	DYRK3	ENST00000367106	human	ensembl	69_37n	1	known	silent	c.12	p.K4	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	82	0	0	101	122	54.71	-	-	-	G	206810308	A	G	206810308	2	3	351	1	0	0	0	0	0	0	0	1	4892	69	3	5		5	DYRK3	1	206810308	Silent	SNP	A	TCGA-AO-A1KP-01A-11D-A13L-09	1737304	206810308	42440313	3	38167										
AFF3	0	genome.wustl.edu	37	chr2	100170901	100170901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ggatgctgacgatggtcgacGgggacagggcgctggcgttg	20	8	0	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	100170901	100170901	G	A	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.3506	p.P1169L	0.994	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	96	0	0	40	36	47.37	-	-	-	A	100170901	G	A	100170901	3	1	351	1	0	0	0	0	1	0	0	0	358	1116	39	1	257	1	AFF3	2	100170901	Missense_Mutation	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09		100170901	143028472	4	38168										
POTEF	0	genome.wustl.edu	37	chr2	130832835	130832835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	tcatgccctgctgcctggggCgccccacgatggaagggaag	15	13	1	0			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	130832835	130832835	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2210	p.R737H	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	42	0	0	37	34	47.89	-	-	-	T	130832835	C	T	130832835	3	4	351	1	0	0	0	0	1	0	0	0	12339	768	27	1	1021	1	POTEF	2	130832835	Missense_Mutation	SNP	C	TCGA-AO-A1KP-01A-11D-A13L-09	30661934	130832835	112366538	5	38169										
FRYL	0	genome.wustl.edu	37	chr4	48542474	48542474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	atgctgaggtaaaacccttaAggaagagctgctgaagtcct	11	8	0	3			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	48542474	48542474	A	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.6191	p.L2064R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	23	0	0	35	36	50.7	-	-	-	C	48542474	A	C	48542474	3	2	351	1	0	0	0	0	1	0	0	0	6113	72	3	5	2926	5	FRYL	4	48542474	Missense_Mutation	SNP	A	TCGA-AO-A1KP-01A-11D-A13L-09		48542474	142611802	6	38170										
OTUD4	0	genome.wustl.edu	37	chr4	146059245	146059245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ttagacagatccagattttcCagagacagatccaattctcc	6	11	1	5			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	146059245	146059245	C	T	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	silent	c.2682	p.L894	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	19	0	0	26	23	46.94	-	-	-	T	146059245	C	T	146059245	2	4	351	1	0	0	0	0	0	0	0	1	11387	581	21	4		4	OTUD4	4	146059245	Silent	SNP	C	TCGA-AO-A1KP-01A-11D-A13L-09	97516771	146059245	45095031	7	38171										
ASB5	0	genome.wustl.edu	37	chr4	177190238	177190238	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	taattgttgagcaaacggccGattttcttctaacaccgaca	7	10	2	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	177190238	177190238	G	C	SNP	ASB5	ENST00000296525	human	ensembl	69_37n	-1	known	missense	c.22	p.R8G	0.997	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB5	HGNC	ENSG00000164122	38	0	0	36	34	48.57	-	-	-	C	177190238	G	C	177190238	3	2	351	1	0	0	0	0	1	0	0	0	1030	1057	37	3	995	3	ASB5	4	177190238	Missense_Mutation	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09	31130993	177190238	13964038	8	38172										
CMYA5	0	genome.wustl.edu	37	chr5	79033437	79033437	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ctttagtatcatttctgaagGctgtgagatattgaatattc	8	5	2	3			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	79033437	79033437	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.8849	p.G2950V	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	24	0	0	22	9	29.03	-	-	-	T	79033437	G	T	79033437	3	4	351	1	0	0	0	0	1	0	0	0	3620	1203	42	4	8855	4	CMYA5	5	79033437	Missense_Mutation	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09		79033437	101881823	9	38173										
PCDHA4	0	genome.wustl.edu	37	chr5	140188293	140188293	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	gagcgcgcgctgtcgagctaCgtttcggtgcatgcggagag	17	10	0	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	140188293	140188293	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.1521	p.Y507	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	22	0	0	10	9	47.37	-	-	-	T	140188293	C	T	140188293	2	4	351	1	0	0	0	0	0	0	0	1	11599	547	19	1		1	PCDHA4	5	140188293	Silent	SNP	C	TCGA-AO-A1KP-01A-11D-A13L-09	61154856	140188293	40726967	10	38174										
DPY19L4	0	genome.wustl.edu	37	chr8	95796032	95796032	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	tctcaagagaaatgaaaatgTaagacattttaaattctaca	5	5	2	3			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	8	95796032	95796032	T	A	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	1	known	splice_site	c.1848+2	e17+2	1.000	-	-	-	no_errors	DPY19L4	HGNC	ENSG00000156162	43	0	0	117	63	35	-	-	-	A	95796032	T	A	95796032	5	1	351	1	0	0	0	0	0	0	1	0	4778	1652	57	5	1916	5	DPY19L4	8	95796032	Splice_Site	SNP	T	TCGA-AO-A1KP-01A-11D-A13L-09		95796032	50567990	11	38175										
SYNPO2L	0	genome.wustl.edu	37	chr10	75406951	75406951	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ttcgggccgcctgggggaaaAagggagagagcagtgggttg	20	6	0	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	10	75406951	75406951	A	G	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	missense	c.2459	p.F820S	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	27	0	0	5	8	61.54	-	-	-	G	75406951	A	G	75406951	3	3	351	1	0	0	0	0	1	0	0	0	15550	14	1	5	478	5	SYNPO2L	10	75406951	Missense_Mutation	SNP	A	TCGA-AO-A1KP-01A-11D-A13L-09		75406951	60127796	12	38176										
FGF6	0	genome.wustl.edu	37	chr12	4554416	4554416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	gggttctcctcgtgggtcccGctgatccggccgtcggggag	17	13	1	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	4554416	4554416	G	A	SNP	FGF6	ENST00000228837	human	ensembl	69_37n	-1	known	silent	c.321	p.S107	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF6	HGNC	ENSG00000111241	32	0	0	15	5	23.81	-	-	-	A	4554416	G	A	4554416	2	1	351	1	0	0	0	0	0	0	0	1	5902	1078	38	1		1	FGF6	12	4554416	Silent	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09		4554416	129297479	13	38177										
CLSTN3	0	genome.wustl.edu	37	chr12	7293852	7293852	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	tcccaggtctgtgatgatgaGtggcaccactacgctctgaa	11	11	2	4			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	7293852	7293852	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	silent	c.1338	p.E446	0.997	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	262	0	0	29	27	48.21	-	-	-	A	7293852	G	A	7293852	2	1	351	1	0	0	0	0	0	0	0	1	3593	1020	36	4		4	CLSTN3	12	7293852	Silent	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09	2739436	7293852	126558043	14	38178										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100482869	100482869	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	gggcagatgcgactactgtaGagctctaaaaagattcgaaa	11	7	1	3			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	100482869	100482869	G	A	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.845	p.S282F	0.999	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	40	0	0	30	41	57.75	-	-	-	A	100482869	G	A	100482869	3	1	351	1	0	0	0	0	1	0	0	0	17066	942	33	2	3629	2	UHRF1BP1L	12	100482869	Missense_Mutation	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09	93189017	100482869	33369026	15	38179										
SLC9A5	0	genome.wustl.edu	37	chr16	67289834	67289834	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	tcgctctccgccattcttgcGtgagttctgggggccttgca	12	13	3	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	16	67289834	67289834	G	A	SNP	SLC9A5	ENST00000299798	human	ensembl	69_37n	1	known	splice_site	c.911+1	e5+1	1.000	-	-	-	no_errors	SLC9A5	HGNC	ENSG00000135740	21	0	0	2	6	75	-	-	-	A	67289834	G	A	67289834	5	1	351	1	0	0	0	0	0	0	1	0	14806	1159	40	1	930	1	SLC9A5	16	67289834	Splice_Site	SNP	G	TCGA-AO-A1KP-01A-11D-A13L-09		67289834	23064919	16	38180										
DNAH17	0	genome.wustl.edu	37	chr17	76501415	76501415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	cctgatcaaaaaccatgtacTcgtcctccttgctgtacatt	5	13	1	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	17	76501415	76501415	T	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.4904	p.E1635A	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	42	0	0	33	27	44.26	-	-	-	G	76501415	T	G	76501415	3	3	351	1	0	0	0	0	1	0	0	0	4637	1551	54	5	8676	5	DNAH17	17	76501415	Missense_Mutation	SNP	T	TCGA-AO-A1KP-01A-11D-A13L-09		76501415	4693795	17	38181										
LAMA1	0	genome.wustl.edu	37	chr18	6959369	6959369	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	ctgaccaaggagatggaatgCgcttgtccatcactgcaggt	12	10	1	2			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	18	6959369	6959369	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.7749	p.A2583	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	41	0	0	37	19	33.93	-	-	-	T	6959369	C	T	6959369	2	4	351	1	0	0	0	0	0	0	0	1	8659	755	27	1		1	LAMA1	18	6959369	Silent	SNP	C	TCGA-AO-A1KP-01A-11D-A13L-09		6959369	71117879	18	38182										
KRTAP23-1	0	genome.wustl.edu	37	chr21	31720857	31720857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	aggagccaccacgggagtagCctgagtagcacaggtagccc	14	12	0	1			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	21	31720857	31720857	C	T	SNP	KRTAP23-1	ENST00000334160	human	ensembl	69_37n	-1	known	missense	c.68	p.G23D	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP23-1	HGNC	ENSG00000186980	180	0	0	60	47	43.93	-	-	-	T	31720857	C	T	31720857	3	4	351	1	0	0	0	0	1	0	0	0	8595	739	26	4	133	4	KRTAP23-1	21	31720857	Missense_Mutation	SNP	C	TCGA-AO-A1KP-01A-11D-A13L-09		31720857	16409038	19	38183										
CACNA1F	0	genome.wustl.edu	37	chrX	49082871	49082871	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.645833333333333	0	0.704545454545455	1	1	0	caggggctgggggccctcacAggcagcgtgtacagctggcc	17	13	1	0			TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	X	49082871	49082871	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.1496	p.L499Q	0.691	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	124	0	0	14	11	42.31	-	-	-	T	49082871	A	T	49082871	3	4	351	1	0	0	0	0	1	0	0	0	2568	202	7	5	4589	5	CACNA1F	23	49082871	Missense_Mutation	SNP	A	TCGA-AO-A1KP-01A-11D-A13L-09		49082871	106187689	20	38184										
AIM1L	0	genome.wustl.edu	37	chr1	26658074	26658074	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cctcagagagaatgtgctggTcaccctcgaagttcgtctca	10	12	3	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	26658074	26658074	T	C	SNP	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	missense	c.1598	p.D533G	0.929	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	29	0	0	7	6	46.15	-	-	-	C	26658074	T	C	26658074	3	2	352	1	0	0	0	0	1	0	0	0	431	1667	58	5	789	5	AIM1L	1	26658074	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09		26658074	222592547	1	38185										
PDE4B	0	genome.wustl.edu	37	chr1	66833528	66833528	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cactcaggaagatggttattGacatggtaagactttagcct	10	7	1	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	66833528	66833528	G	A	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.1534	p.D512N	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	76	0	0	44	12	21.05	-	-	-	A	66833528	G	A	66833528	3	1	352	1	0	0	0	0	1	0	0	0	11713	1290	45	2	1942	2	PDE4B	1	66833528	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	40175454	66833528	182417093	2	38186										
LRRC40	0	genome.wustl.edu	37	chr1	70621394	70621394	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttttggaatttcacatagttGattcttactgaagttaatag	7	4	2	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	70621394	70621394	G	C	SNP	LRRC40	ENST00000370952	human	ensembl	69_37n	-1	known	missense	c.1306	p.Q436E	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC40	HGNC	ENSG00000066557	104	0	0	67	21	23.86	-	-	-	C	70621394	G	C	70621394	3	2	352	1	0	0	0	0	1	0	0	0	9064	1299	45	2	522	2	LRRC40	1	70621394	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	3787866	70621394	178629227	3	38187										
VAV3	0	genome.wustl.edu	37	chr1	108292204	108292204	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	acgatcactgccaaatcaaaTaagaagatatgcctgggaaa	8	8	2	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	108292204	108292204	T	G	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	missense	c.1272	p.L424F	0.983	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215	82	0	0	34	5	12.82	-	-	-	G	108292204	T	G	108292204	3	3	352	1	0	0	0	0	1	0	0	0	17230	1403	49	5	1352	5	VAV3	1	108292204	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09	37670810	108292204	140958417	4	38188										
GNAI3	0	genome.wustl.edu	37	chr1	110121878	110121878	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cagtgctgaagaaggagtcaTgactccagaactagcaggag	13	8	1	4			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	110121878	110121878	T	C	SNP	GNAI3	ENST00000369851	human	ensembl	69_37n	1	known	missense	c.356	p.M119T	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_GproteinA	-	no_errors	GNAI3	HGNC	ENSG00000065135	45	0	0	17	7	29.17	-	-	-	C	110121878	T	C	110121878	3	2	352	1	0	0	0	0	1	0	0	0	6558	1464	51	5	370	5	GNAI3	1	110121878	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09	1829674	110121878	139128743	5	38189										
SPTA1	0	genome.wustl.edu	37	chr1	158608032	158608032	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttcaggtccttgagtgcatcCtagaaagtctcgggatactc	10	10	2	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	158608032	158608032	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	splice_site	c.4981-1	e36-1	1.000	-	-	-	no_errors	SPTA1	HGNC	ENSG00000163554	33	0	0	20	8	28.57	-	-	-	G	158608032	C	G	158608032	5	3	352	1	0	0	0	0	0	0	1	0	15207	695	24	4	2347	4	SPTA1	1	158608032	Splice_Site	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	48486154	158608032	90642589	6	38190										
OR6K6	0	genome.wustl.edu	37	chr1	158725496	158725496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gccacctactcagtgttttgGgacacagcaattgctgtcac	9	12	2	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	158725496	158725496	G	C	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	missense	c.891	p.W297C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	79	0	0	97	20	17.09	-	-	-	C	158725496	G	C	158725496	3	2	352	1	0	0	0	0	1	0	0	0	11277	1241	43	4	893	4	OR6K6	1	158725496	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	117464	158725496	90525125	7	38191										
ASTN1	0	genome.wustl.edu	37	chr1	176926869	176926869	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tacagcggaaattcttactgCagcccccgttatctttgctg	8	12	2	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	176926869	176926869	C	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1856	p.C619F	1.000	smart_EGF-like	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	22	0	0	23	5	17.86	-	-	-	A	176926869	C	A	176926869	3	1	352	1	0	0	0	0	1	0	0	0	1068	710	25	4	2108	4	ASTN1	1	176926869	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	18201373	176926869	72323752	8	38192										
PLXNA2	0	genome.wustl.edu	37	chr1	208224737	208224737	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	aaggccattggatgatggggGtgagacacacacgatctcac	13	9	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	208224737	208224737	G	C	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.3025	p.P1009A	0.996	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	16	0	0	20	4	16.67	-	-	-	C	208224737	G	C	208224737	3	2	352	1	0	0	0	0	1	0	0	0	12194	1261	44	4	2727	4	PLXNA2	1	208224737	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	31297868	208224737	41025884	9	38193										
SERTAD4	0	genome.wustl.edu	37	chr1	210415039	210415039	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gaaaaggatccatggagaaaTtatcatgcagaataactggt	10	5	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	210415039	210415039	T	C	SNP	SERTAD4	ENST00000367012	human	ensembl	69_37n	1	known	missense	c.428	p.I143T	0.999	pfam_SERTA,pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497	34	0	0	34	15	30.61	-	-	-	C	210415039	T	C	210415039	3	2	352	1	0	0	0	0	1	0	0	0	14211	1493	52	5	438	5	SERTAD4	1	210415039	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09	2190302	210415039	38835582	10	38194										
TLR5	0	genome.wustl.edu	37	chr1	223286092	223286092	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tccaagattctaaggttgggCaggtttctgaaggcctcctt	11	9	2	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	223286092	223286092	C	A	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	24	0	0	31	8	20	-	-	-	A	223286092	C	A	223286092	2	1	352	1	0	0	0	0	0	0	0	1	16049	697	25	4		4	TLR5	1	223286092	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	12871053	223286092	25964529	11	38195										
MTR	0	genome.wustl.edu	37	chr1	237015844	237015844	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	acattacctggagccagaatAagtggaggtctttccaactt	9	9	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	1	237015844	237015844	A	C	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	silent	c.1719	p.I573	1.000	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	29	0	0	26	8	23.53	-	-	-	C	237015844	A	C	237015844	2	2	352	1	0	0	0	0	0	0	0	1	10030	352	13	5		5	MTR	1	237015844	Silent	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09	13729752	237015844	12234777	12	38196										
SNTG2	0	genome.wustl.edu	37	chr2	1079205	1079205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttccactttgtccctacagaCgaaaaccactattgctctgt	5	13	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	1079205	1079205	C	T	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	1	known	missense	c.74	p.T25M	0.995	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	44	0	0	37	12	24.49	-	-	-	T	1079205	C	T	1079205	3	4	352	1	0	0	0	0	1	0	0	0	14964	550	19	1	80	1	SNTG2	2	1079205	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		1079205	242120168	13	38197										
PLEKHH2	0	genome.wustl.edu	37	chr2	43924309	43924309	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttttgattaacgatgttgtaGaagttcaaggaaagaagtca	10	3	2	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	43924309	43924309	G	C	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	splice_site	c.503-1	e6-1	1.000	-	-	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	38	0	0	39	12	23.53	-	-	-	C	43924309	G	C	43924309	5	2	352	1	0	0	0	0	0	0	1	0	12151	956	33	2	524	2	PLEKHH2	2	43924309	Splice_Site	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	42845104	43924309	199275064	14	38198										
RAB1A	0	genome.wustl.edu	37	chr2	65315695	65315695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	aacattggacttctcagcacCaccagctgttgctccgggac	9	14	1	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	65315695	65315695	C	A	SNP	RAB1A	ENST00000409784	human	ensembl	69_37n	-1	known	missense	c.550	p.G184C	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1A	HGNC	ENSG00000138069	42	0	0	44	10	18.52	-	-	-	A	65315695	C	A	65315695	3	1	352	1	0	0	0	0	1	0	0	0	12988	594	21	4	71	4	RAB1A	2	65315695	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	21391386	65315695	177883678	15	38199										
CTNNA2	0	genome.wustl.edu	37	chr2	80773146	80773146	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tccgagtgttgacagaggccGtggatgacatcacctcagtg	13	10	2	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	80773146	80773146	G	C	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1600	p.V534L	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	23	0	0	32	14	30.43	-	-	-	C	80773146	G	C	80773146	3	2	352	1	0	0	0	0	1	0	0	0	4045	1145	40	3	1328	3	CTNNA2	2	80773146	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	15457451	80773146	162426227	16	38200										
CYBRD1	0	genome.wustl.edu	37	chr2	172411303	172411303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	agcaaggaaaagaaacttagCtctggatgaggctgggcaga	14	6	1	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	172411303	172411303	C	T	SNP	CYBRD1	ENST00000321348	human	ensembl	69_37n	1	known	missense	c.827	p.A276V	0.000	NULL	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967	27	0	0	9	7	43.75	-	-	-	T	172411303	C	T	172411303	3	4	352	1	0	0	0	0	1	0	0	0	4165	797	28	4	841	4	CYBRD1	2	172411303	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	91638157	172411303	70788070	17	38201										
ASNSD1	0	genome.wustl.edu	37	chr2	190530910	190530910	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ctgctgagcatttcagtcaaGatttaaaagaggacttacta	8	7	2	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	2	190530910	190530910	G	C	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.52	p.D18H	0.081	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	30	0	0	41	13	24.07	-	-	-	C	190530910	G	C	190530910	3	2	352	1	0	0	0	0	1	0	0	0	1053	942	33	2	54	2	ASNSD1	2	190530910	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	18119607	190530910	52668463	18	38202										
ASTE1	0	genome.wustl.edu	37	chr3	130743882	130743882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tagctctatcctttaaagttGtaagctttttatctgaaatg	6	6	2	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	130743882	130743882	G	T	SNP	ASTE1	ENST00000264992	human	ensembl	69_37n	-1	known	missense	c.269	p.T90K	0.000	pfam_XPG_DNA_repair_N	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	60	0	0	75	16	17.58	-	-	-	T	130743882	G	T	130743882	3	4	352	1	0	0	0	0	1	0	0	0	1066	1377	48	4	1786	4	ASTE1	3	130743882	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		130743882	67278548	19	38203										
PIK3CA	0	genome.wustl.edu	37	chr3	178951957	178951957	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttcataaatcttttctcaatGatgcttggctctggaatgcc	7	9	4	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	178951957	178951957	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3012	p.M1004I	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0	36	26	41.94	-	-	-	A	178951957	G	A	178951957	3	1	352	1	0	0	0	0	1	0	0	0	11987	1290	45	2	3090	2	PIK3CA	3	178951957	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	48208075	178951957	19070473	20	38204										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	31	0	0	25	19	43.18	-	-	-	G	178952085	A	G	178952085	3	3	352	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09	128	178952085	19070345	21	38205										
RASL11B	0	genome.wustl.edu	37	chr4	53731600	53731600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tccatcactgactacaagagCtatgaactcatcagccagct	6	13	3	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	53731600	53731600	C	T	SNP	RASL11B	ENST00000248706	human	ensembl	69_37n	1	known	silent	c.375	p.S125	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11B	HGNC	ENSG00000128045	20	0	0	25	8	24.24	-	-	-	T	53731600	C	T	53731600	2	4	352	1	0	0	0	0	0	0	0	1	13165	796	28	4		4	RASL11B	4	53731600	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		53731600	137422676	22	38206										
UGT2B15	0	genome.wustl.edu	37	chr4	69512933	69512933	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	caggccagcaggaatgctatCacatccaaagagtggtactg	11	10	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	69512933	69512933	C	G	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	silent	c.1482	p.V494	0.949	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	75	0	0	45	12	21.05	-	-	-	G	69512933	C	G	69512933	2	3	352	1	0	0	0	0	0	0	0	1	17055	813	29	2		2	UGT2B15	4	69512933	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	15781333	69512933	121641343	23	38207										
HERC3	0	genome.wustl.edu	37	chr4	89577057	89577057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tagccttcgtgccttcttctGgactcatctatgcatttggt	8	11	4	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	4	89577057	89577057	G	A	SNP	HERC3	ENST00000264345	human	ensembl	69_37n	1	known	missense	c.940	p.G314R	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641	96	0	0	64	11	14.67	-	-	-	A	89577057	G	A	89577057	3	1	352	1	0	0	0	0	1	0	0	0	7110	1349	47	4	966	4	HERC3	4	89577057	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	20064124	89577057	101577219	24	38208										
FBXL7	0	genome.wustl.edu	37	chr5	15500794	15500794	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gacggctacaggatgggcgcGaacaatggcaaacagtacgg	15	9	0	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	15500794	15500794	G	C	SNP	FBXL7	ENST00000504595	human	ensembl	69_37n	1	known	silent	c.9	p.A3	1.000	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL7	HGNC	ENSG00000183580	20	0	0	32	7	17.95	-	-	-	C	15500794	G	C	15500794	2	2	352	1	0	0	0	0	0	0	0	1	5770	1045	37	3		3	FBXL7	5	15500794	Silent	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		15500794	165414466	25	38209										
ZFR	0	genome.wustl.edu	37	chr5	32420120	32420120	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tggtgcataggcagcagtaaCtgtgtgagcagctactggag	15	7	0	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	32420120	32420120	C	A	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.226	p.V76F	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	28	0	0	25	6	19.35	-	-	-	A	32420120	C	A	32420120	3	1	352	1	0	0	0	0	1	0	0	0	17755	565	20	4	3070	4	ZFR	5	32420120	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	16919326	32420120	148495140	26	38210										
DMGDH	0	genome.wustl.edu	37	chr5	78338302	78338302	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ctcaaagagttcctttccaaAacctaaaaagatttgccctt	4	11	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	78338302	78338302	A	T	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	missense	c.997	p.F333I	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	29	0	0	2	10	76.92	-	-	-	T	78338302	A	T	78338302	3	4	352	1	0	0	0	0	1	0	0	0	4617	14	1	5	1643	5	DMGDH	5	78338302	Missense_Mutation	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09	45918182	78338302	102576958	27	38211										
PCDHB8	0	genome.wustl.edu	37	chr5	140558924	140558924	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ccaggctgacaacacatctcAatatgaccgtgctggtgtcg	10	12	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	5	140558924	140558924	A	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.1309	p.N437Y	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	82	0	0	68	9	11.69	-	-	-	T	140558924	A	T	140558924	3	4	352	1	0	0	0	0	1	0	0	0	11621	130	5	5	1311	5	PCDHB8	5	140558924	Missense_Mutation	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09	62220622	140558924	40356336	28	38212										
TNFAIP3	0	genome.wustl.edu	37	chr6	138197148	138197148	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	aacagacaaaatgctaagaaGtttggaatcaggttccaatt	8	6	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	6	138197148	138197148	G	C	SNP	TNFAIP3	ENST00000237289	human	ensembl	69_37n	1	known	missense	c.650	p.S217T	1.000	pfam_OTU,pfscan_OTU	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503	31	0	0	26	8	23.53	-	-	-	C	138197148	G	C	138197148	3	2	352	1	0	0	0	0	1	0	0	0	16369	1029	36	4	664	4	TNFAIP3	6	138197148	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		138197148	32917919	29	38213										
STK31	0	genome.wustl.edu	37	chr7	23827704	23827704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	acaatgtatttgctttaaacCgtgaacaaggaattgttgga	9	5	0	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	7	23827704	23827704	C	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.2593	p.R865C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	36	0	0	22	10	31.25	-	-	-	T	23827704	C	T	23827704	3	4	352	1	0	0	0	0	1	0	0	0	15387	652	23	1	2675	1	STK31	7	23827704	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		23827704	135310959	30	38214										
KIAA1429	0	genome.wustl.edu	37	chr8	95504889	95504889	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ataaattttaccttgacgttAtaaaggtctcatgcttgtgc	7	7	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	95504889	95504889	A	T	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.4799	p.I1600K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	82	0	0	105	14	11.76	-	-	-	T	95504889	A	T	95504889	3	4	352	1	0	0	0	0	1	0	0	0	8283	449	16	5	655	5	KIAA1429	8	95504889	Missense_Mutation	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09		95504889	50859133	31	38215										
RIMS2	0	genome.wustl.edu	37	chr8	104897774	104897774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	agatgatgaggatgtggaaaGcagagatgaatacgaaaggc	15	3	0	5			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	104897774	104897774	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.947	p.S316N	0.982	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	49	0	0	31	11	26.19	-	-	-	A	104897774	G	A	104897774	3	1	352	1	0	0	0	0	1	0	0	0	13454	971	34	4	1087	4	RIMS2	8	104897774	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	9392885	104897774	41466248	32	38216										
FAM49B	0	genome.wustl.edu	37	chr8	130891704	130891704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	caaaactttaagaagattccCcatgttaaggtacctgtcaa	6	9	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	8	130891704	130891704	C	A	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.4	p.G2W	1.000	NULL	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	44	0	0	67	10	12.99	-	-	-	A	130891704	C	A	130891704	3	1	352	1	0	0	0	0	1	0	0	0	5622	623	22	4	1010	4	FAM49B	8	130891704	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	25993930	130891704	15472318	33	38217										
C9orf163	0	genome.wustl.edu	37	chr9	139379382	139379382	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	aaagagggggatgcagaggtGgatgctgcctctcaggcgtg	18	7	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	9	139379382	139379382	G	A	SNP	C9orf163	ENST00000354376	human	ensembl	69_37n	1	known	nonsense	c.482	p.W161*	0.000	NULL	NULL	-	no_errors	C9orf163	HGNC	ENSG00000196366	31	0	0	17	6	26.09	-	-	-	A	139379382	G	A	139379382	4	1	352	1	0	0	0	0	0	1	0	0	2492	1357	47	4	484	4	C9orf163	9	139379382	Nonsense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		139379382	1834049	34	38218										
SORBS1	0	genome.wustl.edu	37	chr10	97096374	97096374	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cttcctggaaaagcgctaccCaggggcttgccgggccggct	14	14	0	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	10	97096374	97096374	C	G	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	silent	c.3543	p.L1181	0.984	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	21	0	0	21	8	27.59	-	-	-	G	97096374	C	G	97096374	2	3	352	1	0	0	0	0	0	0	0	1	15016	581	21	4		4	SORBS1	10	97096374	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		97096374	38438373	35	38219										
SSRP1	0	genome.wustl.edu	37	chr11	57099707	57099707	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ccatctcatagagggatcctGacatgttcttggtgagccga	11	10	2	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	11	57099707	57099707	G	A	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	missense	c.920	p.S307L	1.000	pfam_SSRP1_dom	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136	28	0	0	16	6	27.27	-	-	-	A	57099707	G	A	57099707	3	1	352	1	0	0	0	0	1	0	0	0	15285	1294	45	2	1249	2	SSRP1	11	57099707	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		57099707	77906809	36	38220										
APOBEC1	0	genome.wustl.edu	37	chr12	7802275	7802275	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tgccatcttcttgaaatcttTaaacagggtggaagactctg	9	8	4	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	7802275	7802275	T	C	SNP	APOBEC1	ENST00000229304	human	ensembl	69_37n	-1	known	silent	c.579	p.L193	0.058	NULL	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC1	HGNC	ENSG00000111701	51	0	0	40	8	16.67	-	-	-	C	7802275	T	C	7802275	2	2	352	1	0	0	0	0	0	0	0	1	789	1751	61	5		5	APOBEC1	12	7802275	Silent	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09		7802275	126049620	37	38221										
CIT	0	genome.wustl.edu	37	chr12	120150414	120150414	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	acctgctttggctgtatttgCgagttcggaagcaccaacgg	12	10	0	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	120150414	120150414	C	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.4540	p.A1514S	0.754	smart_Pleckstrin_homology,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	15	0	0	18	5	21.74	-	-	-	A	120150414	C	A	120150414	3	1	352	1	0	0	0	0	1	0	0	0	3468	768	27	3	1595	3	CIT	12	120150414	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	112348139	120150414	13701481	38	38222										
DDX55	0	genome.wustl.edu	37	chr12	124104154	124104155	+	Frame_Shift_Del	DEL	AA	AA	-													0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	aaactcctggagcaacaaagAagagagaaaacagaaaatga							TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	12	124104154	124104155	AA	-	DEL	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	frame_shift_del	c.1509_1510	p.K506fs	0.942:0.875	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	23	0	0	23	4	14.29	-	-	-	-	124104155	AA	-	124104154	7	5	352	1	0	1	0	1	0	0	0	0	4404	243	9	0	1559	0	DDX55	12	124104154	Frame_Shift_Del	DEL	AA	TCGA-AO-A1KR-01A-12D-A142-09	3953740	124104154	9747741	39	38223										
INTS6	0	genome.wustl.edu	37	chr13	51948544	51948544	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gtttattttgaggtccagccAcaaattcatctgcttcatct	6	10	4	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	13	51948544	51948544	A	C	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1904	p.V635G	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	60	0	0	31	11	26.19	-	-	-	C	51948544	A	C	51948544	3	2	352	1	0	0	0	0	1	0	0	0	7836	159	6	5	775	5	INTS6	13	51948544	Missense_Mutation	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09		51948544	63221334	40	38224										
EIF2AK4	0	genome.wustl.edu	37	chr15	40265856	40265856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ccggctacccagtgctgcctTctttagtgagacacagagac	10	13	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	15	40265856	40265856	T	C	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.1724	p.F575S	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	34	0	0	20	7	25.93	-	-	-	C	40265856	T	C	40265856	3	2	352	1	0	0	0	0	1	0	0	0	5034	1783	62	5	1766	5	EIF2AK4	15	40265856	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09		40265856	62265536	41	38225										
MPG	0	genome.wustl.edu	37	chr16	129524	129524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	acctgcagagcagccacacaGctcgtccgatgcagcccagg	11	16	0	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	129524	129524	G	C	SNP	MPG	ENST00000219431	human	ensembl	69_37n	1	known	missense	c.140	p.S47T	0.000	NULL	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	-	no_errors	MPG	HGNC	ENSG00000103152	17	0	0	16	6	27.27	-	-	-	C	129524	G	C	129524	3	2	352	1	0	0	0	0	1	0	0	0	9796	971	34	4	174	4	MPG	16	129524	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		129524	90225229	42	38226										
WDR90	0	genome.wustl.edu	37	chr16	705776	705776	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cgcctccctgcccccaggccCcggcattgccatcagcagcc	9	22	1	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	705776	705776	C	T	SNP	WDR90	ENST00000549091	human	ensembl	69_37n	1	novel	missense	c.1853	p.P618L	0.913	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	18	0	0	5	9	64.29	-	-	-	T	705776	C	T	705776	3	4	352	1	0	0	0	0	1	0	0	0	17434	623	22	4	1919	4	WDR90	16	705776	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	576252	705776	89648977	43	38227										
PRSS27	0	genome.wustl.edu	37	chr16	2763623	2763623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ccaaactcggtgtctttgctGtagagcaggttgcacttggg	13	9	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	2763623	2763623	G	A	SNP	PRSS27	ENST00000302641	human	ensembl	69_37n	-1	known	silent	c.585	p.Y195	0.994	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS27	HGNC	ENSG00000172382	83	0	0	55	15	21.43	-	-	-	A	2763623	G	A	2763623	2	1	352	1	0	0	0	0	0	0	0	1	12701	1372	48	4		4	PRSS27	16	2763623	Silent	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	2057847	2763623	87591130	44	38228										
SCNN1B	0	genome.wustl.edu	37	chr16	23360076	23360076	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cccaagaagaaagccatgtgGttcctgctcaccctgctctt	8	14	2	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	16	23360076	23360076	G	A	SNP	SCNN1B	ENST00000307331	human	ensembl	69_37n	1	known	nonsense	c.291	p.W97*	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447	51	0	0	26	8	23.53	-	-	-	A	23360076	G	A	23360076	4	1	352	1	0	0	0	0	0	1	0	0	14016	1270	44	4	158	4	SCNN1B	16	23360076	Nonsense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	20596453	23360076	66994677	45	38229										
SENP3	0	genome.wustl.edu	37	chr17	7468905	7468905	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	agaactggctcaatgaccagGtgagaaagggtagagaaaca	13	6	1	4			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	7468905	7468905	G	C	SNP	SENP3	ENST00000429205	human	ensembl	69_37n	1	known	splice_site	c.1215+1	e4+1	1.000	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956	38	0	0	16	13	44.83	-	-	-	C	7468905	G	C	7468905	5	2	352	1	0	0	0	0	0	0	1	0	14136	1275	44	4	1230	4	SENP3	17	7468905	Splice_Site	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		7468905	73726305	46	38230										
KRT9	0	genome.wustl.edu	37	chr17	39724452	39724452	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tcaaggaggttgtggtaggtCtcgatttccttctccagccg	12	10	3	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	39724452	39724452	C	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	silent	c.1356	p.E452	0.004	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	49	0	0	24	5	17.24	-	-	-	T	39724452	C	T	39724452	2	4	352	1	0	0	0	0	0	0	0	1	8554	912	32	2		2	KRT9	17	39724452	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	32255547	39724452	41470758	47	38231										
BRCA1	0	genome.wustl.edu	37	chr17	41245615	41245617	+	In_Frame_Del	DEL	AAC	AAC	-													0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ctttatctcttcactgctagAacaactatcaatttgcaatt							TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	41245615	41245617	AAC	-	DEL	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	in_frame_del	c.1933_1931	p.C644in_frame_del	0.863:0.861:0.848	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	44	0	0	22	4	14.29	-	-	-	-	41245617	AAC	-	41245615	7	5	352	1	0	1	0	1	0	0	0	0	1506	246	9	0	3784	0	BRCA1	17	41245615	In_Frame_Del	DEL	AAC	TCGA-AO-A1KR-01A-12D-A142-09	1521163	41245615	39949595	48	38232										
CACNG5	0	genome.wustl.edu	37	chr17	64876780	64876780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cgtccccaccggacgatactGgcctttgtctctggcatctt	9	15	2	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	64876780	64876780	G	A	SNP	CACNG5	ENST00000169565	human	ensembl	69_37n	1	known	silent	c.390	p.L130	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429	69	0	0	63	10	13.7	-	-	-	A	64876780	G	A	64876780	2	1	352	1	0	0	0	0	0	0	0	1	2585	1335	47	4		4	CACNG5	17	64876780	Silent	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	23631165	64876780	16318430	49	38233										
ITGB4	0	genome.wustl.edu	37	chr17	73723282	73723282	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tctgtccccccagcaaaccgCtgcaagaaggccccagtgaa	9	16	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	73723282	73723282	C	A	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	silent	c.87	p.R29	1.000	pirsf_Integrin_bsu-4,superfamily_Plexin-like_fold,smart_Plexin-like	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	17	0	0	23	7	23.33	-	-	-	A	73723282	C	A	73723282	2	1	352	1	0	0	0	0	0	0	0	1	7951	784	28	4		4	ITGB4	17	73723282	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	8846502	73723282	7471928	50	38234										
DNAH17	0	genome.wustl.edu	37	chr17	76482127	76482127	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttgtgtcaggatcaatgtagTagtcaaaaatcgttccctgc	9	8	3	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	17	76482127	76482127	T	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.7148	p.Y2383F	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	32	0	0	44	11	19.3	-	-	-	A	76482127	T	A	76482127	3	1	352	1	0	0	0	0	1	0	0	0	4637	1638	57	5	6342	5	DNAH17	17	76482127	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09	2758845	76482127	4713083	51	38235										
SS18	0	genome.wustl.edu	37	chr18	23612480	23612480	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ttaggatactgaggacctggAccaccctgtgaaggacctga	12	10	0	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	18	23612480	23612480	A	G	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	silent	c.1113	p.G371	0.970	NULL	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	46	0	0	28	12	30	-	-	-	G	23612480	A	G	23612480	2	3	352	1	0	0	0	0	0	0	0	1	15266	262	10	5		5	SS18	18	23612480	Silent	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09		23612480	54464768	52	38236										
DSG4	0	genome.wustl.edu	37	chr18	28991149	28991149	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	cgttttaggcagatgcgcgcTgcaggcaactccagcgctgt	13	12	0	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	18	28991149	28991149	T	C	SNP	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	missense	c.2150	p.L717P	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	56	0	0	47	6	11.11	-	-	-	C	28991149	T	C	28991149	3	2	352	1	0	0	0	0	1	0	0	0	4814	1580	55	5	2272	5	DSG4	18	28991149	Missense_Mutation	SNP	T	TCGA-AO-A1KR-01A-12D-A142-09	5378669	28991149	49086099	53	38237										
TNPO2	0	genome.wustl.edu	37	chr19	12816348	12816348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tgcaccagggtgacacagcgCtggtagacgggctcacagta	14	11	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	12816348	12816348	C	T	SNP	TNPO2	ENST00000425528	human	ensembl	69_37n	-1	known	silent	c.1821	p.Q607	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576	14	0	0	15	5	25	-	-	-	T	12816348	C	T	12816348	2	4	352	1	0	0	0	0	0	0	0	1	16431	796	28	4		4	TNPO2	19	12816348	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		12816348	46312635	54	38238										
ZNF229	0	genome.wustl.edu	37	chr19	44934254	44934254	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ccacacggcttgtctatttcAgggaatctgtgatcaacatg	9	10	4	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	44934254	44934254	A	G	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	silent	c.702	p.P234	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	40	0	0	36	7	16.28	-	-	-	G	44934254	A	G	44934254	2	3	352	1	0	0	0	0	0	0	0	1	17878	175	7	5		5	ZNF229	19	44934254	Silent	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09	32117906	44934254	14194729	55	38239										
HRC	0	genome.wustl.edu	37	chr19	49656737	49656737	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ctgtccagtgggttggggatGatggtgaagcggggctcatc	18	7	1	2			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	49656737	49656737	G	C	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.1758	p.I586M	1.000	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	16	0	0	17	6	26.09	-	-	-	C	49656737	G	C	49656737	3	2	352	1	0	0	0	0	1	0	0	0	7403	1280	45	2	365	2	HRC	19	49656737	Missense_Mutation	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09	4722483	49656737	9472246	56	38240										
ZNF175	0	genome.wustl.edu	37	chr19	52090259	52090259	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gacacagaacagcttgatgaCgttgttgggtctggtcagct	13	8	2	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	52090259	52090259	C	T	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	silent	c.675	p.D225	0.482	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	20	0	0	18	8	30.77	-	-	-	T	52090259	C	T	52090259	2	4	352	1	0	0	0	0	0	0	0	1	17841	535	19	1		1	ZNF175	19	52090259	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	2433522	52090259	7038724	57	38241										
NLRP12	0	genome.wustl.edu	37	chr19	54299149	54299149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tgcagccaggatggctcagcCgcttgcaaagcagtcggaca	13	12	1	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	54299149	54299149	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	missense	c.3065	p.R1022Q	0.507	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	21	0	0	21	10	32.26	-	-	-	T	54299149	C	T	54299149	3	4	352	1	0	0	0	0	1	0	0	0	10546	652	23	1	131	1	NLRP12	19	54299149	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	2208890	54299149	4829834	58	38242										
EPS8L1	0	genome.wustl.edu	37	chr19	55597838	55597838	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ggccccgctgggacaggcccCgctgggacagctgcgatagc	16	15	0	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	19	55597838	55597838	C	G	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	missense	c.1729	p.R577G	0.990	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	22	0	0	22	6	21.43	-	-	-	G	55597838	C	G	55597838	3	3	352	1	0	0	0	0	1	0	0	0	5232	652	23	3	1843	3	EPS8L1	19	55597838	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	1298689	55597838	3531145	59	38243										
ZFP64	0	genome.wustl.edu	37	chr20	50701561	50701561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	ggacacttctccgggtggtcGgcctggtgcagccggctgtg	17	12	1	0			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	20	50701561	50701561	G	A	SNP	ZFP64	ENST00000361387	human	ensembl	69_37n	-1	known	silent	c.1473	p.A491	0.996	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	17	0	0	24	5	17.24	-	-	-	A	50701561	G	A	50701561	2	1	352	1	0	0	0	0	0	0	0	1	17748	1103	39	1		1	ZFP64	20	50701561	Silent	SNP	G	TCGA-AO-A1KR-01A-12D-A142-09		50701561	12323959	60	38244										
DNMT3L	0	genome.wustl.edu	37	chr21	45670749	45670749	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gttcagcaccagattgtccaCgaacatccagaagaagggcc	10	12	1	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	21	45670749	45670749	C	A	SNP	DNMT3L	ENST00000270172	human	ensembl	69_37n	-1	known	missense	c.853	p.V285L	0.948	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	DNMT3L	HGNC	ENSG00000142182	15	0	0	12	5	29.41	-	-	-	A	45670749	C	A	45670749	3	1	352	1	0	0	0	0	1	0	0	0	4713	536	19	3	322	3	DNMT3L	21	45670749	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		45670749	2459146	61	38245										
SRRD	0	genome.wustl.edu	37	chr22	26884128	26884128	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gtggccactgattctatcccAagagagatcttggtcacagg	11	10	3	3			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	22	26884128	26884128	A	C	SNP	SRRD	ENST00000215917	human	ensembl	69_37n	1	known	silent	c.384	p.P128	0.000	NULL	pfam_SRR1-like	-	no_errors	SRRD	HGNC	ENSG00000100104	53	0	0	42	10	19.23	-	-	-	C	26884128	A	C	26884128	2	2	352	1	0	0	0	0	0	0	0	1	15258	117	5	5		5	SRRD	22	26884128	Silent	SNP	A	TCGA-AO-A1KR-01A-12D-A142-09		26884128	24420438	62	38246										
FAM47A	0	genome.wustl.edu	37	chrX	34148765	34148765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	gactcttgggaagctccgggCggagactggacactcgacga	15	11	1	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	X	34148765	34148765	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1631	p.R544H	0.010	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	39	0	0	19	11	36.67	-	-	-	T	34148765	C	T	34148765	3	4	352	1	0	0	0	0	1	0	0	0	5615	768	27	1	748	1	FAM47A	23	34148765	Missense_Mutation	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09		34148765	121121795	63	38247										
PORCN	0	genome.wustl.edu	37	chrX	48372917	48372917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.259706184775636	1.66884816753927	2.22513089005236	1.2715033657442	1	1	0	tctcttctgcccccagggacCtgacggtgtccaagccactg	10	16	2	1			TCGA-AO-A1KR-01A-12D-A142-09	TCGA-AO-A1KR-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3b598d8-8a3b-4506-aa98-9fbc5b51afd4	de361418-e012-49b7-b32c-25ba92e5fd7c	X	48372917	48372917	C	T	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	silent	c.850	p.L284	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	28	0	0	14	20	58.82	-	-	-	T	48372917	C	T	48372917	2	4	352	1	0	0	0	0	0	0	0	1	12332	680	24	4		4	PORCN	23	48372917	Silent	SNP	C	TCGA-AO-A1KR-01A-12D-A142-09	14224152	48372917	106897643	64	38248										
TDRKH	0	genome.wustl.edu	37	chr1	151751327	151751327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ggctccatgctagaactggtGtttttccataatgctggctc	10	10	0	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	151751327	151751327	G	A	SNP	TDRKH	ENST00000368822	human	ensembl	69_37n	-1	known	silent	c.717	p.N239	0.000	NULL	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134	93	0	0	34	38	52.78	-	-	-	A	151751327	G	A	151751327	2	1	353	1	0	0	0	0	0	0	0	1	15832	1368	48	4		4	TDRKH	1	151751327	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		151751327	97499294	1	38249										
TDRD10	0	genome.wustl.edu	37	chr1	154493890	154493890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tccacaagcgaaaactgttcGtgaatacaagcaaaaggccc	8	11	0	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	154493890	154493890	G	A	SNP	TDRD10	ENST00000368480	human	ensembl	69_37n	1	known	missense	c.304	p.V102M	0.021	smart_RRM_dom,pfscan_RRM_dom	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239	114	0	0	74	14	15.91	-	-	-	A	154493890	G	A	154493890	3	1	353	1	0	0	0	0	1	0	0	0	15826	1145	40	1	322	1	TDRD10	1	154493890	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	2742563	154493890	94756731	2	38250										
TIPRL	0	genome.wustl.edu	37	chr1	168165856	168165856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gatggggtgcttatcagaatGaatgacacgagactttacca	11	7	1	4			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	168165856	168165856	G	A	SNP	TIPRL	ENST00000367833	human	ensembl	69_37n	1	known	missense	c.588	p.M196I	1.000	pfam_TIP41-like	pfam_TIP41-like	-	no_errors	TIPRL	HGNC	ENSG00000143155	69	0	0	136	20	12.74	-	-	-	A	168165856	G	A	168165856	3	1	353	1	0	0	0	0	1	0	0	0	16021	1290	45	2	631	2	TIPRL	1	168165856	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	13671966	168165856	81084765	3	38251										
PLA2G4A	0	genome.wustl.edu	37	chr1	186934718	186934718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gccaagtgactctagtcctcCgttcaaggtaaggatacata	9	10	2	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	186934718	186934718	C	T	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.1757	p.P586L	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	53	0	0	32	25	43.86	-	-	-	T	186934718	C	T	186934718	3	4	353	1	0	0	0	0	1	0	0	0	12075	652	23	1	1811	1	PLA2G4A	1	186934718	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	18768862	186934718	62315903	4	38252										
CLK1	0	genome.wustl.edu	37	chr2	201726041	201726041	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tcttccacttctaccagaagActtgctactatggttctgat	6	11	3	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	2	201726041	201726041	A	C	SNP	CLK1	ENST00000321356	human	ensembl	69_37n	-1	known	missense	c.310	p.S104A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK1	HGNC	ENSG00000013441	71	0	0	22	15	40.54	-	-	-	C	201726041	A	C	201726041	3	2	353	1	0	0	0	0	1	0	0	0	3566	275	10	5	1188	5	CLK1	2	201726041	Missense_Mutation	SNP	A	TCGA-AO-A1KS-01A-11D-A13L-09		201726041	41473332	5	38253										
GBX2	0	genome.wustl.edu	37	chr2	237074835	237074835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ctctagctccagcagctgctCgctggtgaaggcagtccgcc	12	15	1	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	2	237074835	237074835	C	T	SNP	GBX2	ENST00000306318	human	ensembl	69_37n	-1	known	missense	c.769	p.E257K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505	8	0	0	10	13	56.52	-	-	-	T	237074835	C	T	237074835	3	4	353	1	0	0	0	0	1	0	0	0	6331	893	31	1	281	1	GBX2	2	237074835	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	35348794	237074835	6124538	6	38254										
COL6A6	0	genome.wustl.edu	37	chr3	130290018	130290018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	aagtcctcattgtgatcaccGatggggaatcccatgatgct	10	10	2	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	3	130290018	130290018	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.2758	p.D920N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	41	0	0	3	20	86.96	-	-	-	A	130290018	G	A	130290018	3	1	353	1	0	0	0	0	1	0	0	0	3733	1058	37	1	2780	1	COL6A6	3	130290018	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		130290018	67732412	7	38255										
TFDP2	0	genome.wustl.edu	37	chr3	141671811	141671811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	atttgaaactgattgggtagAgttcagaagtagtccctgat	11	5	1	5			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	3	141671811	141671811	A	G	SNP	TFDP2	ENST00000489671	human	ensembl	69_37n	-1	known	missense	c.1099	p.S367P	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP2	HGNC	ENSG00000114126	54	0	0	33	4	10.81	-	-	-	G	141671811	A	G	141671811	3	3	353	1	0	0	0	0	1	0	0	0	15893	304	11	5	249	5	TFDP2	3	141671811	Missense_Mutation	SNP	A	TCGA-AO-A1KS-01A-11D-A13L-09	11381793	141671811	56350619	8	38256										
EVC2	0	genome.wustl.edu	37	chr4	5692993	5692993	+	Frame_Shift_Del	DEL	A	A	-													0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	accaccagtggaaacttaccAgtgcacatttctgaaaaatt							TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	4	5692993	5692993	A	-	DEL	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	frame_shift_del	c.518	p.L173fs	0.965	NULL	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	37	0	0	21	26	54.17	-	-	-	-	5692993	A	-	5692993	7	5	353	1	0	1	0	1	0	0	0	0	5323	202	7	0	3484	0	EVC2	4	5692993	Frame_Shift_Del	DEL	A	TCGA-AO-A1KS-01A-11D-A13L-09		5692993	185461283	9	38257										
CSN2	0	genome.wustl.edu	37	chr4	70823234	70823234	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ctgcatcaagggctggagcaGaggcagaggaagatgcagat	16	7	1	4			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	4	70823234	70823234	G	A	SNP	CSN2	ENST00000353151	human	ensembl	69_37n	-1	known	silent	c.433	p.L145	0.000	pfam_Casein,pirsf_Casein_beta	pfam_Casein,pirsf_Casein_beta	-	no_errors	CSN2	HGNC	ENSG00000135222	93	0	0	39	11	22	-	-	-	A	70823234	G	A	70823234	2	1	353	1	0	0	0	0	0	0	0	1	3980	933	33	2		2	CSN2	4	70823234	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	65130241	70823234	120331042	10	38258										
FGB	0	genome.wustl.edu	37	chr4	155490686	155490686	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gtgaatattggcttggaaatGataaaattagccagcttacc	9	6	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	4	155490686	155490686	G	A	SNP	FGB	ENST00000302068	human	ensembl	69_37n	1	known	missense	c.979	p.D327N	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGB	HGNC	ENSG00000171564	37	0	0	22	10	31.25	-	-	-	A	155490686	G	A	155490686	3	1	353	1	0	0	0	0	1	0	0	0	5877	1290	45	2	1005	2	FGB	4	155490686	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	84667452	155490686	35663590	11	38259										
MTRR	0	genome.wustl.edu	37	chr5	7878145	7878145	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gcagaggacaagaggagataAgtggcgcactcccggtggca	16	9	0	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	5	7878145	7878145	A	C	SNP	MTRR	ENST00000264668	human	ensembl	69_37n	1	known	missense	c.571	p.S191R	0.004	NULL	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	MTRR	HGNC	ENSG00000124275	34	0	0	19	12	38.71	-	-	-	C	7878145	A	C	7878145	3	2	353	1	0	0	0	0	1	0	0	0	10033	72	3	5	589	5	MTRR	5	7878145	Missense_Mutation	SNP	A	TCGA-AO-A1KS-01A-11D-A13L-09		7878145	173037115	12	38260										
SEC63	0	genome.wustl.edu	37	chr6	108218930	108218930	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gttgttgctatcttcatcatCtaacactgttaagatggaag	8	7	4	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	6	108218930	108218930	C	G	SNP	SEC63	ENST00000369002	human	ensembl	69_37n	-1	known	missense	c.1363	p.D455H	1.000	pfam_Sec63-dom,superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ARM-type_fold,smart_DnaJ_N,smart_Sec63-dom,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	SEC63	HGNC	ENSG00000025796	128	0	0	44	16	26.67	-	-	-	G	108218930	C	G	108218930	3	3	353	1	0	0	0	0	1	0	0	0	14093	913	32	2	951	2	SEC63	6	108218930	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		108218930	62896137	13	38261										
LPA	0	genome.wustl.edu	37	chr6	161056225	161056225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gcgacggcagtcccttctgcGtctgagcattgcgtcaggtt	13	12	3	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	6	161056225	161056225	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	silent	c.1005	p.D335	0.005	superfamily_Kringle-like,smart_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	25	0	0	13	6	31.58	-	-	-	A	161056225	G	A	161056225	2	1	353	1	0	0	0	0	0	0	0	1	8969	1136	40	1		1	LPA	6	161056225	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	52837295	161056225	10058842	14	38262										
PCLO	0	genome.wustl.edu	37	chr7	82784867	82784867	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	cttagcaggaccaagaggctGagctggaggctttgttgtcc	14	9	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	7	82784867	82784867	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	nonsense	c.1090	p.Q364*	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	81	0	0	62	10	13.89	-	-	-	A	82784867	G	A	82784867	4	1	353	1	0	0	0	0	0	1	0	0	11656	1299	45	2	14451	2	PCLO	7	82784867	Nonsense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		82784867	76353796	15	38263										
WDR91	0	genome.wustl.edu	37	chr7	134889109	134889109	+	Frame_Shift_Del	DEL	G	G	-													0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tgaggggctcttcttactctGaggcagcagcgaggacagga							TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	7	134889109	134889109	G	-	DEL	WDR91	ENST00000354475	human	ensembl	69_37n	-1	known	frame_shift_del	c.802	p.Q268fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875	54	0	0	15	2	11.76	-	-	-	-	134889109	G	-	134889109	7	5	353	1	0	1	0	1	0	0	0	0	17435	1299	45	0	1481	0	WDR91	7	134889109	Frame_Shift_Del	DEL	G	TCGA-AO-A1KS-01A-11D-A13L-09	52104242	134889109	24249554	16	38264										
WHSC1L1	0	genome.wustl.edu	37	chr8	38146045	38146045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tcctgaggccccagcctctcCgctccgttttgatgatctct	8	16	2	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	8	38146045	38146045	C	T	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	missense	c.3461	p.R1154Q	0.995	smart_SET_dom,pfscan_SET_dom	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	51	0	0	50	18	26.47	-	-	-	T	38146045	C	T	38146045	3	4	353	1	0	0	0	0	1	0	0	0	17460	652	23	1	876	1	WHSC1L1	8	38146045	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		38146045	108217977	17	38265										
SLC10A5	0	genome.wustl.edu	37	chr8	82606131	82606131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ttacaaacaggaagaggcagCgtacaaactttagcaaagga	10	7	0	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	8	82606131	82606131	C	T	SNP	SLC10A5	ENST00000518568	human	ensembl	69_37n	-1	known	silent	c.1077	p.T359	0.976	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598	48	0	0	79	45	35.71	-	-	-	T	82606131	C	T	82606131	2	4	353	1	0	0	0	0	0	0	0	1	14466	755	27	1		1	SLC10A5	8	82606131	Silent	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	44460086	82606131	63757891	18	38266										
SYCE1	0	genome.wustl.edu	37	chr10	135373612	135373612	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gacctttctgcagcttttgcAccatttccatcaagtcttca	5	13	4	0			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	10	135373612	135373612	A	C	SNP	SYCE1	ENST00000343131	human	ensembl	69_37n	-1	known	missense	c.119	p.V40G	1.000	NULL	NULL	-	no_errors	SYCE1	HGNC	ENSG00000171772	57	0	0	38	28	42.42	-	-	-	C	135373612	A	C	135373612	3	2	353	1	0	0	0	0	1	0	0	0	15519	159	6	5	1027	5	SYCE1	10	135373612	Missense_Mutation	SNP	A	TCGA-AO-A1KS-01A-11D-A13L-09		135373612	161135	19	38267										
SUV420H1	0	genome.wustl.edu	37	chr11	67941347	67941347	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tggcaatatttcaaatccacTgtcagttgcaaacattcgca	6	10	2	0			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	11	67941347	67941347	T	A	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.577	p.S193C	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	71	0	0	68	40	37.04	-	-	-	A	67941347	T	A	67941347	3	1	353	1	0	0	0	0	1	0	0	0	15505	1580	55	5	2112	5	SUV420H1	11	67941347	Missense_Mutation	SNP	T	TCGA-AO-A1KS-01A-11D-A13L-09		67941347	67065169	20	38268										
IGHMBP2	0	genome.wustl.edu	37	chr11	68678993	68678993	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tctcagaaagaacttgccatCatccatggacctcctggcac	7	14	2	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	11	68678993	68678993	C	T	SNP	IGHMBP2	ENST00000539224	human	ensembl	69_37n	1	novel	missense	c.535	p.H179Y	1.000	NULL	NULL	-	no_errors	IGHMBP2	HGNC	ENSG00000132740	60	0	0	44	21	32.31	-	-	-	T	68678993	C	T	68678993	3	4	353	1	0	0	0	0	1	0	0	0	7645	816	29	2	651	2	IGHMBP2	11	68678993	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	737646	68678993	66327523	21	38269										
CD69	0	genome.wustl.edu	37	chr12	9907739	9907739	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gctgaagtccagctcctcttCacagtagaaataaagtagca	8	10	2	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	9907739	9907739	C	T	SNP	CD69	ENST00000228434	human	ensembl	69_37n	-1	known	silent	c.306	p.V102	0.000	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD69	HGNC	ENSG00000110848	50	0	0	43	8	15.69	-	-	-	T	9907739	C	T	9907739	2	4	353	1	0	0	0	0	0	0	0	1	3060	813	29	2		2	CD69	12	9907739	Silent	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		9907739	123944156	22	38270										
LRRIQ1	0	genome.wustl.edu	37	chr12	85515540	85515540	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	caatatactaaactctaattCagaaagccgcactgaagaac	5	10	2	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	85515540	85515540	C	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.3443	p.S1148L	0.002	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	42	0	0	60	19	24.05	-	-	-	T	85515540	C	T	85515540	3	4	353	1	0	0	0	0	1	0	0	0	9095	838	29	2	3501	2	LRRIQ1	12	85515540	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	75607801	85515540	48336355	23	38271										
ANAPC7	0	genome.wustl.edu	37	chr12	110834204	110834204	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	attccttatcatgaaagagaGaatctgcatgatacaccaaa	6	8	2	4			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	110834204	110834204	G	A	SNP	ANAPC7	ENST00000455511	human	ensembl	69_37n	-1	known	missense	c.257	p.S86F	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510	27	0	0	61	14	18.67	-	-	-	A	110834204	G	A	110834204	3	1	353	1	0	0	0	0	1	0	0	0	606	942	33	2	1586	2	ANAPC7	12	110834204	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	25318664	110834204	23017691	24	38272										
KNTC1	0	genome.wustl.edu	37	chr12	123073362	123073365	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tgctacaacactactgcacaAagtaagtatttgttctgggt							TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	123073362	123073365	AAGT	-	DEL	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	frame_shift_del	c.3998_3999	p.K1333fs	1.000:1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	29	0	0	63	18	22.22	-	-	-	-	123073365	AAGT	-	123073362	7	5	353	1	0	1	0	1	0	0	0	0	8481	28	1	0	4152	0	KNTC1	12	123073362	Frame_Shift_Del	DEL	AAGT	TCGA-AO-A1KS-01A-11D-A13L-09	12239158	123073362	10778533	25	38273										
B3GALTL	0	genome.wustl.edu	37	chr13	31903672	31903672	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ttaccctaaggactacctttCtcatcaagttcccatatcgt	4	13	2	0			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	13	31903672	31903672	C	T	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	missense	c.1364	p.S455F	0.946	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	39	0	0	84	152	64.41	-	-	-	T	31903672	C	T	31903672	3	4	353	1	0	0	0	0	1	0	0	0	1256	913	32	2	1422	2	B3GALTL	13	31903672	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		31903672	83266206	26	38274										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32908481	32908481	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	gccttctatggtattaaggtGaagggtgtccgtgggcagtg	16	6	1	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	32908481	32908481	G	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	silent	c.69	p.V23	0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	102	0	0	49	15	23.44	-	-	-	A	32908481	G	A	32908481	2	1	353	1	0	0	0	0	0	0	0	1	865	1277	45	2		2	ARHGAP11A	15	32908481	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		32908481	69622911	27	38275										
ANKDD1A	0	genome.wustl.edu	37	chr15	65239671	65239671	+	Frame_Shift_Del	DEL	C	C	-													0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	agcttgtcctttaagcaggaCcatcggcaggaaacacagca							TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	65239671	65239671	C	-	DEL	ANKDD1A	ENST00000380230	human	ensembl	69_37n	1	known	frame_shift_del	c.1209	p.H404fs	1.000	superfamily_DEATH-like	pfam_Ankyrin_rpt,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,prints_Ankyrin_rpt	-	no_errors	ANKDD1A	HGNC	ENSG00000166839	62	0	0	12	2	14.29	-	-	-	-	65239671	C	-	65239671	7	5	353	1	0	1	0	1	0	0	0	0	624	506	18	0	1259	0	ANKDD1A	15	65239671	Frame_Shift_Del	DEL	C	TCGA-AO-A1KS-01A-11D-A13L-09	32331190	65239671	37291721	28	38276										
ISLR2	0	genome.wustl.edu	37	chr15	74425574	74425574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	catcaacaacaaccggctgcGtacgctggcgcctggcacct	10	16	1	0			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	74425574	74425574	G	A	SNP	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	missense	c.479	p.R160H	0.994	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	13	0	0	10	10	50	-	-	-	A	74425574	G	A	74425574	3	1	353	1	0	0	0	0	1	0	0	0	7913	1145	40	1	481	1	ISLR2	15	74425574	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	9185903	74425574	28105818	29	38277										
PTPN9	0	genome.wustl.edu	37	chr15	75815503	75815503	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	aagtaaaacagagcctgaagTaccacatgttggactgactt	9	8	0	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	75815503	75815503	T	C	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	silent	c.381	p.V127	0.817	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	63	0	0	24	8	25	-	-	-	C	75815503	T	C	75815503	2	2	353	1	0	0	0	0	0	0	0	1	12877	1625	57	5		5	PTPN9	15	75815503	Silent	SNP	T	TCGA-AO-A1KS-01A-11D-A13L-09	1389929	75815503	26715889	30	38278										
ANKRD11	0	genome.wustl.edu	37	chr16	89350800	89350800	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tgtctttgattctcttcagtGatttttcatctttaaagagc	6	7	5	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	16	89350800	89350800	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.2150	p.S717L	0.023	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	50	0	0	18	38	67.86	-	-	-	A	89350800	G	A	89350800	3	1	353	1	0	0	0	0	1	0	0	0	639	1294	45	2	5861	2	ANKRD11	16	89350800	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		89350800	1003953	31	38279										
MYOCD	0	genome.wustl.edu	37	chr17	12655755	12655755	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ctgaattaagacaacagcttCgaattcggggcttgcctgtg	11	9	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	12655755	12655755	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	nonsense	c.1150	p.R384*	1.000	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	41	0	0	6	12	66.67	-	-	-	T	12655755	C	T	12655755	4	4	353	1	0	0	0	0	0	1	0	0	10159	876	31	1	1188	1	MYOCD	17	12655755	Nonsense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		12655755	68539455	32	38280										
RUNDC3A	0	genome.wustl.edu	37	chr17	42390802	42390802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ccagggccgggcatggatccGggtggcactgatggagaagc	18	10	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	42390802	42390802	G	A	SNP	RUNDC3A	ENST00000426726	human	ensembl	69_37n	1	known	missense	c.389	p.R130Q	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3A	HGNC	ENSG00000108309	52	0	0	32	4	11.11	-	-	-	A	42390802	G	A	42390802	3	1	353	1	0	0	0	0	1	0	0	0	13830	1116	39	1	403	1	RUNDC3A	17	42390802	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	29735047	42390802	38804408	33	38281										
UBE2O	0	genome.wustl.edu	37	chr17	74401326	74401326	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	ttgctgttgacgggatagatGatgcagttggtgccgatgag	16	5	0	4			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	74401326	74401326	G	A	SNP	UBE2O	ENST00000319380	human	ensembl	69_37n	-1	known	silent	c.549	p.I183	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	46	0	0	31	8	20.51	-	-	-	A	74401326	G	A	74401326	2	1	353	1	0	0	0	0	0	0	0	1	16965	1280	45	2		2	UBE2O	17	74401326	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	32010524	74401326	6793884	34	38282										
PLEKHG2	0	genome.wustl.edu	37	chr19	39905706	39905706	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tgagcacagtgggctctgagGgggatccagcccctgggccc	16	13	1	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	19	39905706	39905706	G	C	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.184	p.G62R	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	9	0	0	9	7	43.75	-	-	-	C	39905706	G	C	39905706	3	2	353	1	0	0	0	0	1	0	0	0	12143	1232	43	4	190	4	PLEKHG2	19	39905706	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		39905706	19223277	35	38283										
ZNF586	0	genome.wustl.edu	37	chr19	58291158	58291158	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	catactggaatgaggccttaTaagtgaagcaaattttggaa	10	5	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	19	58291158	58291158	T	C	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	silent	c.1203	p.Y401	0.287	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	25	0	0	54	46	46	-	-	-	C	58291158	T	C	58291158	2	2	353	1	0	0	0	0	0	0	0	1	18115	1413	49	5		5	ZNF586	19	58291158	Silent	SNP	T	TCGA-AO-A1KS-01A-11D-A13L-09	18385452	58291158	837825	36	38284										
CYYR1	0	genome.wustl.edu	37	chr21	27840937	27840937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tccatctcgtggtcgtgaccGtagggtggtggtcctgctga	15	10	1	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	21	27840937	27840937	G	A	SNP	CYYR1	ENST00000299340	human	ensembl	69_37n	-1	known	silent	c.348	p.Y116	0.029	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265	37	0	0	20	6	23.08	-	-	-	A	27840937	G	A	27840937	2	1	353	1	0	0	0	0	0	0	0	1	4242	1140	40	1		1	CYYR1	21	27840937	Silent	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09		27840937	20288958	37	38285										
MX2	0	genome.wustl.edu	37	chr21	42770841	42770841	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tagaaatcgctcccgttgttAgaaggacaaataagggagag	12	6	0	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	21	42770841	42770841	A	G	SNP	MX2	ENST00000330714	human	ensembl	69_37n	1	known	silent	c.1167	p.L389	0.008	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX2	HGNC	ENSG00000183486	70	0	0	33	35	51.47	-	-	-	G	42770841	A	G	42770841	2	3	353	1	0	0	0	0	0	0	0	1	10070	417	15	5		5	MX2	21	42770841	Silent	SNP	A	TCGA-AO-A1KS-01A-11D-A13L-09	14929904	42770841	5359054	38	38286										
RBBP7	0	genome.wustl.edu	37	chrX	16871848	16871848	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	aacagatccaaacaatgactCgtgcagcaggtgccaggcca	10	12	0	2			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	16871848	16871848	C	G	SNP	RBBP7	ENST00000380087	human	ensembl	69_37n	-1	known	missense	c.715	p.E239Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP7	HGNC	ENSG00000102054	92	0	0	41	10	19.61	-	-	-	G	16871848	C	G	16871848	3	3	353	1	0	0	0	0	1	0	0	0	13187	893	31	3	590	3	RBBP7	23	16871848	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09		16871848	138398712	39	38287										
TNMD	0	genome.wustl.edu	37	chrX	99849000	99849000	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tcagaagcggaaatggcactGatgaaacattggaagtgcac	12	7	1	3			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	99849000	99849000	G	A	SNP	TNMD	ENST00000373031	human	ensembl	69_37n	1	known	missense	c.289	p.D97N	1.000	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005	92	0	0	65	16	19.75	-	-	-	A	99849000	G	A	99849000	3	1	353	1	0	0	0	0	1	0	0	0	16417	1290	45	2	299	2	TNMD	23	99849000	Missense_Mutation	SNP	G	TCGA-AO-A1KS-01A-11D-A13L-09	82977152	99849000	55421560	40	38288										
WDR44	0	genome.wustl.edu	37	chrX	117577583	117577583	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.341463414634146	14	0.000959325897583921	2.87300252312868	1.48780487804878	3.09463414634146	9.82137070439667e-06	0.000565017679347056	9	tatgtttatatctggagtacCtaccatgacctaagcaagtt	7	8	1	1			TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	117577583	117577583	C	G	SNP	WDR44	ENST00000371848	human	ensembl	69_37n	1	known	missense	c.2143	p.L715V	0.424	pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR44	HGNC	ENSG00000131725	106	0	0	49	41	45.56	-	-	-	G	117577583	C	G	117577583	3	3	353	1	0	0	0	0	1	0	0	0	17393	668	24	4	2515	4	WDR44	23	117577583	Missense_Mutation	SNP	C	TCGA-AO-A1KS-01A-11D-A13L-09	17728583	117577583	37692977	41	38289										
PIKFYVE	0	genome.wustl.edu	37	chr2	209136284	209136284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gtccccaacactggactctgCtaatgatttgcctcgatctc	7	14	2	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	2	209136284	209136284	C	G	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.41	p.A14G	0.991	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	176	0	0	125	69	35.57	-	-	-	G	209136284	C	G	209136284	3	3	354	1	0	0	0	0	1	0	0	0	11998	797	28	4	43	4	PIKFYVE	2	209136284	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		209136284	34063089	1	38290										
ZNF445	0	genome.wustl.edu	37	chr3	44488743	44488743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gagagtgaatcctctgatgtCggtagagattggaactccat	12	7	1	4			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	3	44488743	44488743	C	A	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.2420	p.R807L	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	79	0	0	43	32	42.67	-	-	-	A	44488743	C	A	44488743	3	1	354	1	0	0	0	0	1	0	0	0	18014	884	31	3	679	3	ZNF445	3	44488743	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		44488743	153533687	2	38291										
CD200R1L	0	genome.wustl.edu	37	chr3	112546236	112546236	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	aacacttggaggtgatatccAcgatggaaattcccatcagg	10	9	1	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	3	112546236	112546236	A	G	SNP	CD200R1L	ENST00000398214	human	ensembl	69_37n	-1	known	silent	c.408	p.R136	0.000	pfscan_Ig-like	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1L	HGNC	ENSG00000206531	134	0	0	128	24	15.79	-	-	-	G	112546236	A	G	112546236	2	3	354	1	0	0	0	0	0	0	0	1	3011	146	6	5		5	CD200R1L	3	112546236	Silent	SNP	A	TCGA-AO-A1KT-01A-11D-A13L-09	68057493	112546236	85476194	3	38292										
ZNF721	0	genome.wustl.edu	37	chr4	436212	436212	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	cttgtgttgattcagggctaTggaccatccaaaggctttgc	11	9	1	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	4	436212	436212	T	C	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.2044	p.I682V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	185	0	0	144	61	29.61	-	-	-	C	436212	T	C	436212	3	2	354	1	0	0	0	0	1	0	0	0	18218	1464	51	5	731	5	ZNF721	4	436212	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09		436212	190718064	4	38293										
UGT2A1	0	genome.wustl.edu	37	chr4	70460341	70460341	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	atgggaactcccaccataggGactccgtggtaaatagcttc	10	11	0	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	4	70460341	70460341	G	C	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	silent	c.1185	p.V395	0.981	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	112	0	0	109	56	33.94	-	-	-	C	70460341	G	C	70460341	2	2	354	1	0	0	0	0	0	0	0	1	17050	1161	41	2		2	UGT2A1	4	70460341	Silent	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09	70024129	70460341	120693935	5	38294										
ENC1	0	genome.wustl.edu	37	chr5	73931216	73931216	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gcagccttggaccactcctcGtgcagggtatcataaaccca	9	14	1	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	5	73931216	73931216	G	A	SNP	ENC1	ENST00000302351	human	ensembl	69_37n	-1	known	silent	c.1095	p.H365	0.654	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617	30	0	0	17	13	43.33	-	-	-	A	73931216	G	A	73931216	2	1	354	1	0	0	0	0	0	0	0	1	5150	1136	40	1		1	ENC1	5	73931216	Silent	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09		73931216	106984044	6	38295										
ENC1	0	genome.wustl.edu	37	chr5	73931919	73931919	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	ctgcacatgcatcccggatgTcttgaaactccagcatgtca	8	13	2	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	5	73931919	73931919	T	A	SNP	ENC1	ENST00000302351	human	ensembl	69_37n	-1	known	missense	c.392	p.D131V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617	49	0	0	41	22	34.92	-	-	-	A	73931919	T	A	73931919	3	1	354	1	0	0	0	0	1	0	0	0	5150	1667	58	5	1381	5	ENC1	5	73931919	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09	703	73931919	106983341	7	38296										
SSBP2	0	genome.wustl.edu	37	chr5	81046829	81046829	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gcctggctgtcggacgggacGgcgctgctgttactcttgcc	15	13	1	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	5	81046829	81046829	G	C	SNP	SSBP2	ENST00000320672	human	ensembl	69_37n	-1	known	silent	c.33	p.A11	1.000	prints_SSDP_DNA-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP2	HGNC	ENSG00000145687	68	0	0	47	18	27.27	-	-	-	C	81046829	G	C	81046829	2	2	354	1	0	0	0	0	0	0	0	1	15271	1103	39	3		3	SSBP2	5	81046829	Silent	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09	7114910	81046829	99868431	8	38297										
GRM6	0	genome.wustl.edu	37	chr5	178416347	178416347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	attctcttcccagaactcggCgaaccagatgttcctgcggt	9	13	1	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	5	178416347	178416347	C	T	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	missense	c.1072	p.A358T	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	60	0	0	62	29	31.87	-	-	-	T	178416347	C	T	178416347	3	4	354	1	0	0	0	0	1	0	0	0	6852	768	27	1	1585	1	GRM6	5	178416347	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	97369518	178416347	2498913	9	38298										
MFHAS1	0	genome.wustl.edu	37	chr8	8747876	8747876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	ggctgttgatctggacactgTagcgtgcaaacaacccaagt	11	10	1	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	8	8747876	8747876	T	C	SNP	MFHAS1	ENST00000276282	human	ensembl	69_37n	-1	known	missense	c.2693	p.Y898C	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324	57	0	0	44	5	10	-	-	-	C	8747876	T	C	8747876	3	2	354	1	0	0	0	0	1	0	0	0	9592	1638	57	5	477	5	MFHAS1	8	8747876	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09		8747876	137616146	10	38299										
PLEKHF2	0	genome.wustl.edu	37	chr8	96166631	96166631	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tgccactgctacggagaaatCagaatggatgaatcatataa	9	7	2	3			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	8	96166631	96166631	C	T	SNP	PLEKHF2	ENST00000315367	human	ensembl	69_37n	1	known	missense	c.359	p.S120L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895	54	0	0	49	61	55.45	-	-	-	T	96166631	C	T	96166631	3	4	354	1	0	0	0	0	1	0	0	0	12141	838	29	2	361	2	PLEKHF2	8	96166631	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	87418755	96166631	50197391	11	38300										
MTERFD1	0	genome.wustl.edu	37	chr8	97258550	97258550	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tttaccttcttcacactaagTtcaagttctttctgaaaaaa	3	9	5	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	8	97258550	97258550	T	C	SNP	MTERFD1	ENST00000287025	human	ensembl	69_37n	-1	known	silent	c.810	p.E270	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD1	HGNC	ENSG00000156469	103	0	0	143	43	22.99	-	-	-	C	97258550	T	C	97258550	2	2	354	1	0	0	0	0	0	0	0	1	9991	1722	60	5		5	MTERFD1	8	97258550	Silent	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09	1091919	97258550	49105472	12	38301										
ZFPM2	0	genome.wustl.edu	37	chr8	106815010	106815010	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gtgtttccgaatccagaaagCgaacgaaacagccctgatgt	10	10	0	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	8	106815010	106815010	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	silent	c.2700	p.S900	0.537	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	54	0	0	74	17	18.48	-	-	-	T	106815010	C	T	106815010	2	4	354	1	0	0	0	0	0	0	0	1	17754	767	27	1		1	ZFPM2	8	106815010	Silent	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	9556460	106815010	39549012	13	38302										
TRPM6	0	genome.wustl.edu	37	chr9	77339648	77339648	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tatcctttcaggggaatagtCatttctttttaaatctgcaa	6	7	4	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	9	77339648	77339648	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.5962	p.D1988N	1.000	superfamily_Kinase-like_dom	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	126	0	0	82	21	20.19	-	-	-	T	77339648	C	T	77339648	3	4	354	1	0	0	0	0	1	0	0	0	16686	826	29	2	122	2	TRPM6	9	77339648	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		77339648	63873783	14	38303										
TLE1	0	genome.wustl.edu	37	chr9	84202743	84202743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tctgtgtggccctggaattgCctgataaaacaaaccagatt	9	9	1	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	9	84202743	84202743	C	A	SNP	TLE1	ENST00000376499	human	ensembl	69_37n	-1	known	missense	c.1830	p.R610S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781	55	0	0	33	37	52.86	-	-	-	A	84202743	C	A	84202743	3	1	354	1	0	0	0	0	1	0	0	0	16033	753	26	4	498	4	TLE1	9	84202743	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	6863095	84202743	57010688	15	38304										
MCM10	0	genome.wustl.edu	37	chr10	13222513	13222513	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	actgatcagactgtctcagaTcaaggaaaagatggccagag	11	8	3	5			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	10	13222513	13222513	T	A	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.839	p.I280N	1.000	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	137	0	0	100	37	27.01	-	-	-	A	13222513	T	A	13222513	3	1	354	1	0	0	0	0	1	0	0	0	9456	1435	50	5	861	5	MCM10	10	13222513	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09		13222513	122312234	16	38305										
GRID1	0	genome.wustl.edu	37	chr10	87407363	87407363	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	acaggtgtgttttctcagtgCagattaattcaataagatga	9	5	2	3			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	10	87407363	87407363	C	T	SNP	GRID1	ENST00000474115	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID1	HGNC	ENSG00000182771	8	0	0	2	5	71.43	-	-	-	T	87407363	C	T	87407363	1	4	354	0	1	0	0	0	0	0	0	0	6822	725	25	4		4	GRID1	10	87407363	RNA	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	74184850	87407363	48127384	17	38306										
IL18BP	0	genome.wustl.edu	37	chr11	71712520	71712520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gagcagctgacccctgccctGcacagcaccaacttctcctg	8	18	1	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	11	71712520	71712520	G	A	SNP	IL18BP	ENST00000260049	human	ensembl	69_37n	1	known	silent	c.429	p.L143	0.235	pfscan_Ig-like	pfscan_Ig-like	-	no_errors	IL18BP	HGNC	ENSG00000137496	43	0	0	13	19	59.38	-	-	-	A	71712520	G	A	71712520	2	1	354	1	0	0	0	0	0	0	0	1	7700	1306	46	4		4	IL18BP	11	71712520	Silent	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09		71712520	63293996	18	38307										
IL18	0	genome.wustl.edu	37	chr11	112020809	112020809	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	aaatacctctacagtcagaaTcagtcatatcttcaaataga	4	9	6	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	11	112020809	112020809	T	A	SNP	IL18	ENST00000280357	human	ensembl	69_37n	-1	known	missense	c.212	p.D71V	0.160	superfamily_Cytokine_IL1-like,pirsf_Interleukin_18	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,pirsf_Interleukin_18,prints_Interleukin_18	-	no_errors	IL18	HGNC	ENSG00000150782	103	0	0	34	38	52.78	-	-	-	A	112020809	T	A	112020809	3	1	354	1	0	0	0	0	1	0	0	0	7699	1435	50	5	381	5	IL18	11	112020809	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09	40308289	112020809	22985707	19	38308										
NDUFA9	0	genome.wustl.edu	37	chr12	4796146	4796146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tgcctcacctgcctggcttaGaagaccttggtattcaggca	10	12	2	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	12	4796146	4796146	G	A	SNP	NDUFA9	ENST00000266544	human	ensembl	69_37n	1	known	missense	c.1006	p.E336K	1.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_NmrA	-	no_errors	NDUFA9	HGNC	ENSG00000139180	84	0	0	82	56	40.58	-	-	-	A	4796146	G	A	4796146	3	1	354	1	0	0	0	0	1	0	0	0	10344	943	33	2	1048	2	NDUFA9	12	4796146	Missense_Mutation	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09		4796146	129055749	20	38309										
MLL2	0	genome.wustl.edu	37	chr12	49445333	49445333	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	agggacatgagcgagtcctcCggtggtggggaagcaggtga	19	7	0	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	12	49445333	49445333	C	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.2133	p.P711	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	56	0	0	29	14	31.82	-	-	-	T	49445333	C	T	49445333	2	4	354	1	0	0	0	0	0	0	0	1	9692	639	23	1		1	MLL2	12	49445333	Silent	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	44649187	49445333	84406562	21	38310										
MYH6	0	genome.wustl.edu	37	chr14	23855313	23855313	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	caggtcgtcgttggcacggaCcgcatcgtccagctggatct	13	13	1	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	14	23855313	23855313	C	A	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.4987	p.V1663F	0.024	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	116	0	0	85	26	23.42	-	-	-	A	23855313	C	A	23855313	3	1	354	1	0	0	0	0	1	0	0	0	10110	507	18	4	856	4	MYH6	14	23855313	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		23855313	83494227	22	38311										
GOLGA8A	0	genome.wustl.edu	37	chr15	34673973	34673973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tgggttcagcagcagggttcCgggcagcggccaggaatttg	17	9	1	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	15	34673973	34673973	C	T	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.1628	p.R543Q	0.998	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	14	0	0	5	3	37.5	-	-	-	T	34673973	C	T	34673973	3	4	354	1	0	0	0	0	1	0	0	0	6613	652	23	1	281	1	GOLGA8A	15	34673973	Missense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		34673973	67857419	23	38312										
ADCY9	0	genome.wustl.edu	37	chr16	4042196	4042196	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	ggcgtccgttttctcccggaTgttcttgaacctcagcggaa	11	12	3	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	16	4042196	4042196	T	G	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.2158	p.I720L	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	67	0	0	61	19	23.75	-	-	-	G	4042196	T	G	4042196	3	3	354	1	0	0	0	0	1	0	0	0	301	1464	51	5	1931	5	ADCY9	16	4042196	Missense_Mutation	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09		4042196	86312557	24	38313										
XPO6	0	genome.wustl.edu	37	chr16	28177893	28177893	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	acactgtgtttgtcccagacAgtctccaagatacctaccaa	6	13	1	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	16	28177893	28177893	A	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	silent	c.579	p.T193	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	75	0	0	39	39	50	-	-	-	C	28177893	A	C	28177893	2	2	354	1	0	0	0	0	0	0	0	1	17545	175	7	5		5	XPO6	16	28177893	Silent	SNP	A	TCGA-AO-A1KT-01A-11D-A13L-09	24135697	28177893	62176860	25	38314										
FZD2	0	genome.wustl.edu	37	chr17	42636438	42636438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gctggagcggctcatggtgcGcatcggcgtcttctccgtgc	15	13	3	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	17	42636438	42636438	G	A	SNP	FZD2	ENST00000315323	human	ensembl	69_37n	1	known	missense	c.1382	p.R461H	1.000	pfam_Frizzled,prints_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD2	HGNC	ENSG00000180340	37	0	0	20	24	54.55	-	-	-	A	42636438	G	A	42636438	3	1	354	1	0	0	0	0	1	0	0	0	6179	1087	38	1	1384	1	FZD2	17	42636438	Missense_Mutation	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09		42636438	38558772	26	38315										
USH1G	0	genome.wustl.edu	37	chr17	72916430	72916430	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tcggaacgctcggccagctcGcgccggtatcgccgctccat	12	17	0	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	17	72916430	72916430	G	A	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	silent	c.501	p.R167	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	33	0	0	18	8	30.77	-	-	-	A	72916430	G	A	72916430	2	1	354	1	0	0	0	0	0	0	0	1	17132	1074	38	1		1	USH1G	17	72916430	Silent	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09	30279992	72916430	8278780	27	38316										
MBD3	0	genome.wustl.edu	37	chr19	1585126	1585126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	ttgctcatcagcatcttgccCgtgcggaagtcgaaggtgct	12	11	3	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	19	1585126	1585126	C	T	SNP	MBD3	ENST00000156825	human	ensembl	69_37n	-1	known	silent	c.198	p.T66	0.420	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655	80	0	0	16	17	51.52	-	-	-	T	1585126	C	T	1585126	2	4	354	1	0	0	0	0	0	0	0	1	9415	639	23	1		1	MBD3	19	1585126	Silent	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		1585126	57543857	28	38317										
NLRP2	0	genome.wustl.edu	37	chr19	55489137	55489137	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	cagggataacacggaaagaaCgaccacctctagacgtggac	11	11	1	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	19	55489137	55489137	C	T	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	nonsense	c.343	p.R115*	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	69	0	0	49	28	36.36	-	-	-	T	55489137	C	T	55489137	4	4	354	1	0	0	0	0	0	1	0	0	10549	528	19	1	353	1	NLRP2	19	55489137	Nonsense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	53904011	55489137	3639846	29	38318										
SCRT2	0	genome.wustl.edu	37	chr20	656217	656217	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	actggaagccgtcccctttgAtcttctttaccaggaaggag	10	11	2	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	20	656217	656217	A	T	SNP	SCRT2	ENST00000246104	human	ensembl	69_37n	-1	known	missense	c.29	p.I10N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT2	HGNC	ENSG00000215397	11	0	0	3	6	66.67	-	-	-	T	656217	A	T	656217	3	4	354	1	0	0	0	0	1	0	0	0	14030	333	12	5	902	5	SCRT2	20	656217	Missense_Mutation	SNP	A	TCGA-AO-A1KT-01A-11D-A13L-09		656217	62369303	30	38319										
GNAS	0	genome.wustl.edu	37	chr20	57430146	57430147	+	Frame_Shift_Ins	INS	-	-	C													0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	ccccagcgcaacttactccgINScaactttctcgtgcaagcct							TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	20	57430146	57430147	-	C	INS	GNAS	ENST00000371100	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1826_1827	p.N610fs	0.976:0.985	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	39	0	0	37	20	35.09	-	-	-	C	57430147	-	C	57430146	7	5	354	1	0	1	1	0	0	0	0	0	6562	1087	38	0	2570	0	GNAS	20	57430146	Frame_Shift_Ins	INS	-	TCGA-AO-A1KT-01A-11D-A13L-09	56773929	57430146	5595374	31	38320										
BRWD1	0	genome.wustl.edu	37	chr21	40571242	40571242	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gtgtgagaactggacactggTaatagttgattttcatcttt	10	5	2	2			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	21	40571242	40571242	T	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	silent	c.5100	p.L1700	0.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	54	0	0	68	27	28.42	-	-	-	C	40571242	T	C	40571242	2	2	354	1	0	0	0	0	0	0	0	1	1533	1635	57	5		5	BRWD1	21	40571242	Silent	SNP	T	TCGA-AO-A1KT-01A-11D-A13L-09		40571242	7558653	32	38321										
PIWIL3	0	genome.wustl.edu	37	chr22	25124287	25124287	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tgggcatttggtacataggtAtctttttatgctgtcatatc	9	6	2	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	22	25124287	25124287	A	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.1789	p.Y597N	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	133	0	0	154	69	30.94	-	-	-	T	25124287	A	T	25124287	3	4	354	1	0	0	0	0	1	0	0	0	12033	449	16	5	887	5	PIWIL3	22	25124287	Missense_Mutation	SNP	A	TCGA-AO-A1KT-01A-11D-A13L-09		25124287	26180279	33	38322										
PPARA	0	genome.wustl.edu	37	chr22	46627967	46627967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	gtgatgaacaaagacgggatGctggtagcgtatggaaatgg	16	4	0	3			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	22	46627967	46627967	G	T	SNP	PPARA	ENST00000262735	human	ensembl	69_37n	1	known	missense	c.990	p.M330I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951	101	0	0	93	47	33.57	-	-	-	T	46627967	G	T	46627967	3	4	354	1	0	0	0	0	1	0	0	0	12370	1319	46	4	1008	4	PPARA	22	46627967	Missense_Mutation	SNP	G	TCGA-AO-A1KT-01A-11D-A13L-09	21503680	46627967	4676599	34	38323										
DMD	0	genome.wustl.edu	37	chrX	32459415	32459415	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	agtatgacaataactcatgcCaacatgcccaaacttcctaa	4	12	1	1			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	X	32459415	32459415	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	nonsense	c.3803	p.W1268*	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	91	0	0	44	21	32.31	-	-	-	T	32459415	C	T	32459415	4	4	354	1	0	0	0	0	0	1	0	0	4616	595	21	4	7705	4	DMD	23	32459415	Nonsense_Mutation	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09		32459415	122811145	35	38324										
PORCN	0	genome.wustl.edu	37	chrX	48368217	48368217	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	tgggggtctgcaatggccacCtttagccgccaggaattttt	12	10	1	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	X	48368217	48368217	C	A	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	silent	c.9	p.T3	1.000	NULL	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	55	0	0	34	10	22.73	-	-	-	A	48368217	C	A	48368217	2	1	354	1	0	0	0	0	0	0	0	1	12332	668	24	4		4	PORCN	23	48368217	Silent	SNP	C	TCGA-AO-A1KT-01A-11D-A13L-09	15908802	48368217	106902343	36	38325										
HDAC6	0	genome.wustl.edu	37	chrX	48682594	48682594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.836283002870717	1.16194968553459	0	1.39433962264151	0.1	0.5224358974359	0	aggtctactgtggtcgttacAtcaatggccacatgctccaa	9	11	2	0			TCGA-AO-A1KT-01A-11D-A13L-09	TCGA-AO-A1KT-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97b33dc3-6a62-419a-aa6c-cb84c9f92102	f5386f22-b79a-48ba-b98d-8110ae94009b	X	48682594	48682594	A	G	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.3511	p.I1171V	0.002	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	121	0	0	48	39	44.83	-	-	-	G	48682594	A	G	48682594	3	3	354	1	0	0	0	0	1	0	0	0	7062	217	8	5	3575	5	HDAC6	23	48682594	Missense_Mutation	SNP	A	TCGA-AO-A1KT-01A-11D-A13L-09	314377	48682594	106587966	37	38326										
TMEM57	0	genome.wustl.edu	37	chr1	25783154	25783154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttctttctagtattgggtacCctgtggtaactttggggttt	11	6	2	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	25783154	25783154	C	T	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.484	p.P162S	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	114	0	0	18	29	61.7	-	-	-	T	25783154	C	T	25783154	3	4	355	1	0	0	0	0	1	0	0	0	16279	623	22	4	502	4	TMEM57	1	25783154	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09		25783154	223467467	1	38327										
C1orf173	0	genome.wustl.edu	37	chr1	75055760	75055761	+	Frame_Shift_Ins	INS	-	-	AA													0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aggttgatgaagcagttttcINSatatctacaaaaaataaaag							TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	75055760	75055761	-	AA	INS	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1731_1730	p.M577fs	0.048:0.017	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	81	0	0	19	3	13.64	-	-	-	AA	75055761	-	AA	75055760	7	5	355	1	0	1	1	0	0	0	0	0	2033	826	29	0	2873	0	C1orf173	1	75055760	Frame_Shift_Ins	INS	-	TCGA-AQ-A04H-01B-11D-A10M-09	49272606	75055760	174194861	2	38328										
AMPD1	0	genome.wustl.edu	37	chr1	115220952	115220952	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tgacattgccgtttcaacctAcagcatgaacatccagagaa	7	11	1	3			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	115220952	115220952	A	G	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	splice_site	c.1191+2	e8+2	1.000	-	-	-	no_errors	AMPD1	HGNC	ENSG00000116748	317	0	0	92	50	35.21	-	-	-	G	115220952	A	G	115220952	5	3	355	1	0	0	0	0	0	0	1	0	585	405	14	5	1185	5	AMPD1	1	115220952	Splice_Site	SNP	A	TCGA-AQ-A04H-01B-11D-A10M-09	40165192	115220952	134029669	3	38329										
MAEL	0	genome.wustl.edu	37	chr1	166990949	166990949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tttctggccaaaacagcagcGttcggggaagaggaattacc	12	9	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	166990949	166990949	G	A	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	missense	c.1162	p.V388I	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	240	0	0	37	15	28.85	-	-	-	A	166990949	G	A	166990949	3	1	355	1	0	0	0	0	1	0	0	0	9221	1145	40	1	1208	1	MAEL	1	166990949	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	51769997	166990949	82259672	4	38330										
CFHR5	0	genome.wustl.edu	37	chr1	196967316	196967316	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aatataaaaacattactcaaGctatctgggaaagaatttaa	5	5	2	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	196967316	196967316	G	A	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	silent	c.1101	p.K367	0.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	204	0	0	97	16	14.16	-	-	-	A	196967316	G	A	196967316	2	1	355	1	0	0	0	0	0	0	0	1	3317	962	34	4		4	CFHR5	1	196967316	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	29976367	196967316	52283305	5	38331										
RYR2	0	genome.wustl.edu	37	chr1	237551480	237551480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	agaacatggtgaagagcagcGgaggttagtacctgagctca	14	7	1	4			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	237551480	237551480	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.764	p.R255Q	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	142	0	0	56	65	53.72	-	-	-	A	237551480	G	A	237551480	3	1	355	1	0	0	0	0	1	0	0	0	13855	1116	39	1	808	1	RYR2	1	237551480	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	40584164	237551480	11699141	6	38332										
MAP1LC3C	0	genome.wustl.edu	37	chr1	242159611	242159611	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tctgtagatctctgccatggTtgcgctcatgctgaccaggc	11	12	3	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	1	242159611	242159611	T	A	SNP	MAP1LC3C	ENST00000357246	human	ensembl	69_37n	-1	known	missense	c.298	p.T100S	1.000	pfam_Atg8_ubiquitin-like,pfam_Autophagy-rel_prot_12	pfam_Atg8_ubiquitin-like,pfam_Autophagy-rel_prot_12	-	no_errors	MAP1LC3C	HGNC	ENSG00000197769	113	0	0	136	36	20.93	-	-	-	A	242159611	T	A	242159611	3	1	355	1	0	0	0	0	1	0	0	0	9304	1725	60	5	149	5	MAP1LC3C	1	242159611	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09	4608131	242159611	7091010	7	38333										
GPR17	0	genome.wustl.edu	37	chr2	128409054	128409054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccatcttcctggtctgcttcGtgccctaccacgtcaaccgc	7	18	3	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	2	128409054	128409054	G	A	SNP	GPR17	ENST00000272644	human	ensembl	69_37n	1	known	missense	c.829	p.V277M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230	20	0	0	18	10	35.71	-	-	-	A	128409054	G	A	128409054	3	1	355	1	0	0	0	0	1	0	0	0	6717	1145	40	1	835	1	GPR17	2	128409054	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		128409054	114790319	8	38334										
SCN2A	0	genome.wustl.edu	37	chr2	166245632	166245632	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gttgtggtgaacatgtacatCgcggtcatcctggagaactt	12	8	1	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	2	166245632	166245632	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	silent	c.5316	p.I1772	0.956	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	380	0	0	35	33	48.53	-	-	-	A	166245632	C	A	166245632	2	1	355	1	0	0	0	0	0	0	0	1	14004	874	31	3		3	SCN2A	2	166245632	Silent	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	37836578	166245632	76953741	9	38335										
VIL1	0	genome.wustl.edu	37	chr2	219295614	219295614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ctccgtgggtgagggccaggCgggggcagtgagggagccag	22	9	0	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	2	219295614	219295614	C	T	SNP	VIL1	ENST00000440053	human	ensembl	69_37n	1	putative	missense	c.1115	p.A372V	0.000	NULL	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	VIL1	HGNC	ENSG00000127831	21	0	0	3	20	86.96	-	-	-	T	219295614	C	T	219295614	3	4	355	1	0	0	0	0	1	0	0	0	17261	783	27	1		1	VIL1	2	219295614	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	53049982	219295614	23903759	10	38336										
TTLL4	0	genome.wustl.edu	37	chr2	219611916	219611916	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccaaaagtggattgtgaagcCagtgagtgaatcacagtggg	14	6	1	3			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	2	219611916	219611916	C	T	SNP	TTLL4	ENST00000417196	human	ensembl	69_37n	1	known	nonsense	c.496	p.Q166*	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTLL4	HGNC	ENSG00000135912	115	0	0	73	27	27	-	-	-	T	219611916	C	T	219611916	4	4	355	1	0	0	0	0	0	1	0	0	16826	608	21	4	2191	4	TTLL4	2	219611916	Nonsense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	316302	219611916	23587457	11	38337										
DGKD	0	genome.wustl.edu	37	chr2	234357797	234357797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cccttctcaagaccttggacGatgagtcccaggcctcgtcc	9	16	1	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	2	234357797	234357797	G	A	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.1663	p.D555N	0.990	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	97	0	0	66	21	24.14	-	-	-	A	234357797	G	A	234357797	3	1	355	1	0	0	0	0	1	0	0	0	4503	1058	37	1	1745	1	DGKD	2	234357797	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	14745881	234357797	8841576	12	38338										
OGG1	0	genome.wustl.edu	37	chr3	9792081	9792081	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tctgagctgcgcctggacctGgttctgccttctggacaatc	11	13	3	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	9792081	9792081	G	C	SNP	OGG1	ENST00000429146	human	ensembl	69_37n	1	known	missense	c.43	p.G15R	1.000	pfam_OGG_N	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OGG1	HGNC	ENSG00000114026	32	0	0	34	9	20.93	-	-	-	C	9792081	G	C	9792081	3	2	355	1	0	0	0	0	1	0	0	0	10918	1335	47	4	113	4	OGG1	3	9792081	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		9792081	188230349	13	38339										
IQSEC1	0	genome.wustl.edu	37	chr3	12977013	12977013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	acatcgttgctaaaggcaggCgagtcccagctgttgcgggc	14	11	0	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	12977013	12977013	C	A	SNP	IQSEC1	ENST00000450726	human	ensembl	69_37n	-1	known	missense	c.1546	p.A516S	0.511	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IQSEC1	HGNC	ENSG00000144711	58	0	0	19	45	62.5	-	-	-	A	12977013	C	A	12977013	3	1	355	1	0	0	0	0	1	0	0	0	7871	755	27	3	1939	3	IQSEC1	3	12977013	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	3184932	12977013	185045417	14	38340										
SCN10A	0	genome.wustl.edu	37	chr3	38793791	38793791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccatgcctggagtcagggttGctgggttgaggaagagggct	18	7	1	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	38793791	38793791	G	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.1674	p.S558R	0.283	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	144	0	0	97	38	28.15	-	-	-	T	38793791	G	T	38793791	3	4	355	1	0	0	0	0	1	0	0	0	14000	1310	46	4	4264	4	SCN10A	3	38793791	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	25816778	38793791	159228639	15	38341										
ZPLD1	0	genome.wustl.edu	37	chr3	102171957	102171957	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttatcatcaatctcagcaccTtggagggctgtggaaacaac	9	10	3	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	102171957	102171957	T	G	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	missense	c.349	p.L117V	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	117	0	0	55	19	25.68	-	-	-	G	102171957	T	G	102171957	3	3	355	1	0	0	0	0	1	0	0	0	18314	1606	56	5	359	5	ZPLD1	3	102171957	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09	63378166	102171957	95850473	16	38342										
PLSCR2	0	genome.wustl.edu	37	chr3	146171913	146171913	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ggtgccaggtctgagtaacaTaacctactggtacaccagga	11	10	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	146171913	146171913	T	G	SNP	PLSCR2	ENST00000336685	human	ensembl	69_37n	-1	known	missense	c.359	p.Y120S	1.000	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746	482	0	0	52	240	82.19	-	-	-	G	146171913	T	G	146171913	3	3	355	1	0	0	0	0	1	0	0	0	12184	1406	49	5	327	5	PLSCR2	3	146171913	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09	43999956	146171913	51850517	17	38343										
TNFSF10	0	genome.wustl.edu	37	chr3	172224441	172224441	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tctgcatctttagaccaacaActatttctagcacttttcat	3	11	4	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	172224441	172224441	A	G	SNP	TNFSF10	ENST00000241261	human	ensembl	69_37n	-1	known	silent	c.687	p.S229	0.300	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_ligand_10/11,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_ligand_10/11,pfscan_TNF	-	no_errors	TNFSF10	HGNC	ENSG00000121858	794	0	0	973	172	15.02	-	-	-	G	172224441	A	G	172224441	2	3	355	1	0	0	0	0	0	0	0	1	16396	40	2	5		5	TNFSF10	3	172224441	Silent	SNP	A	TCGA-AQ-A04H-01B-11D-A10M-09	26052528	172224441	25797989	18	38344										
DGKG	0	genome.wustl.edu	37	chr3	185969589	185969589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gttcatgatgctgtatgggaCctggtccccgttttccactt	10	11	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	3	185969589	185969589	C	T	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.1720	p.V574I	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	137	0	0	57	113	66.08	-	-	-	T	185969589	C	T	185969589	3	4	355	1	0	0	0	0	1	0	0	0	4505	507	18	4	683	4	DGKG	3	185969589	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	13745148	185969589	12052841	19	38345										
CNGA1	0	genome.wustl.edu	37	chr4	47938686	47938686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	atttgcaatgtttagatccaGtagaccatctttcattaaaa	5	7	2	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	4	47938686	47938686	G	A	SNP	CNGA1	ENST00000402813	human	ensembl	69_37n	-1	known	silent	c.2032	p.L678	0.246	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	110	0	0	31	14	31.11	-	-	-	A	47938686	G	A	47938686	2	1	355	1	0	0	0	0	0	0	0	1	3626	1020	36	4		4	CNGA1	4	47938686	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		47938686	143215590	20	38346										
RAPGEF6	0	genome.wustl.edu	37	chr5	130769161	130769161	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tgatctcctatccctgaagcGtgctctgtcttttccaatgc	7	13	3	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	5	130769161	130769161	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	silent	c.3936	p.H1312	0.610	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	168	0	0	65	88	57.52	-	-	-	A	130769161	G	A	130769161	2	1	355	1	0	0	0	0	0	0	0	1	13131	1136	40	1		1	RAPGEF6	5	130769161	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		130769161	50146099	21	38347										
PCDHA7	0	genome.wustl.edu	37	chr5	140215374	140215374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gttcgtgaaggagaacaaccCgccgggctgccacatcttca	11	13	2	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	5	140215374	140215374	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.1406	p.P469L	0.220	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	14	0	0	9	10	52.63	-	-	-	T	140215374	C	T	140215374	3	4	355	1	0	0	0	0	1	0	0	0	11602	652	23	1	1408	1	PCDHA7	5	140215374	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	9446213	140215374	40699886	22	38348										
PCDHGA5	0	genome.wustl.edu	37	chr5	140745927	140745927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	catcctggctgacctaggcaGtatcaagacccccattgacc	8	15	1	3			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	5	140745927	140745927	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	missense	c.2030	p.S677N	0.115	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	19	0	0	16	8	33.33	-	-	-	A	140745927	G	A	140745927	3	1	355	1	0	0	0	0	1	0	0	0	11630	1029	36	4	2032	4	PCDHGA5	5	140745927	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	530553	140745927	40169333	23	38349										
COL19A1	0	genome.wustl.edu	37	chr6	70840095	70840095	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gaaatgatgaacatgaagctGgaggcctgaaaggagacaag	14	5	0	5			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	6	70840095	70840095	G	T	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	nonsense	c.1363	p.G455*	0.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	301	2	0.66	191	66	25.68	-	-	-	T	70840095	G	T	70840095	4	4	355	1	0	0	0	0	0	1	0	0	3706	1349	47	4	1429	4	COL19A1	6	70840095	Nonsense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		70840095	100274972	24	38350										
STXBP5	0	genome.wustl.edu	37	chr6	147703925	147703926	+	Frame_Shift_Ins	INS	-	-	A													0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gtgttcagttggagaatcgtINScctcaggaaaggcttcaagg							TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	6	147703925	147703926	-	A	INS	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	frame_shift_ins	c.3205_3206	p.S1069fs	0.856:0.998	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	71	0	0	8	3	27.27	-	-	-	A	147703926	-	A	147703925	7	5	355	1	0	1	1	0	0	0	0	0	15447	1667	58	0	3311	0	STXBP5	6	147703925	Frame_Shift_Ins	INS	-	TCGA-AQ-A04H-01B-11D-A10M-09	76863830	147703925	23411142	25	38351										
CSMD1	0	genome.wustl.edu	37	chr8	3015484	3015484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gcatacaggaaatgtgggaaCggccctgtttaaaagaaaac	11	7	0	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	3015484	3015484	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.5852	p.R1951H	0.863	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	61	0	0	32	16	33.33	-	-	-	T	3015484	C	T	3015484	3	4	355	1	0	0	0	0	1	0	0	0	3976	536	19	1	4973	1	CSMD1	8	3015484	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09		3015484	143348538	26	38352										
PXDNL	0	genome.wustl.edu	37	chr8	52359611	52359611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	acacctttttcacccccaacGaactgactgcttgacattca	4	15	2	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	52359611	52359611	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1478	p.S493L	0.695	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	137	0	0	96	57	37.25	-	-	-	A	52359611	G	A	52359611	3	1	355	1	0	0	0	0	1	0	0	0	12931	1059	37	1	2961	1	PXDNL	8	52359611	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	49344127	52359611	94004411	27	38353										
MRPL15	0	genome.wustl.edu	37	chr8	55060178	55060178	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gtactaggaaggatccaaggCagattttctttggtcttgct	11	7	2	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	55060178	55060178	C	G	SNP	MRPL15	ENST00000260102	human	ensembl	69_37n	1	known	missense	c.790	p.Q264E	1.000	NULL	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	MRPL15	HGNC	ENSG00000137547	203	0	0	149	37	19.89	-	-	-	G	55060178	C	G	55060178	3	3	355	1	0	0	0	0	1	0	0	0	9852	711	25	4	808	4	MRPL15	8	55060178	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	2700567	55060178	91303844	28	38354										
OXR1	0	genome.wustl.edu	37	chr8	107696538	107696538	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ctctccatctctaagccccgTaagtcctctgtcaccaacat	4	17	4	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	107696538	107696538	T	G	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.479	p.V160G	0.998	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	642	0	0	431	116	21.21	-	-	-	G	107696538	T	G	107696538	3	3	355	1	0	0	0	0	1	0	0	0	11407	1638	57	5	697	5	OXR1	8	107696538	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09	52636360	107696538	38667484	29	38355										
COL22A1	0	genome.wustl.edu	37	chr8	139697498	139697498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tggcccagggagcccaggagCaccaggatctcccctgggac	14	15	1	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	139697498	139697498	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.2920	p.A974T	0.002	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	47	0	0	32	23	41.82	-	-	-	T	139697498	C	T	139697498	3	4	355	1	0	0	0	0	1	0	0	0	3711	710	25	4	2072	4	COL22A1	8	139697498	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	32000960	139697498	6666524	30	38356										
EIF2C2	0	genome.wustl.edu	37	chr8	141549439	141549439	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccgctcgttcttgtcagtgcAgaagagccgggtgtggtgcc	15	11	2	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	8	141549439	141549439	A	T	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.2149	p.C717S	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	48	0	0	54	20	27.03	-	-	-	T	141549439	A	T	141549439	3	4	355	1	0	0	0	0	1	0	0	0	5041	188	7	5	446	5	EIF2C2	8	141549439	Missense_Mutation	SNP	A	TCGA-AQ-A04H-01B-11D-A10M-09	1851941	141549439	4814583	31	38357										
TYRP1	0	genome.wustl.edu	37	chr9	12702411	12702414	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ctcctttttattccaactctAcaaacagtttccgaaacaca							TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	9	12702411	12702414	ACAA	-	DEL	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	frame_shift_del	c.1054_1057	p.N353fs	1.000:1.000:0.997:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	224	0	0	18	20	51.28	-	-	-	-	12702414	ACAA	-	12702411	7	5	355	1	0	1	0	1	0	0	0	0	16913	391	14	0	1068	0	TYRP1	9	12702411	Frame_Shift_Del	DEL	ACAA	TCGA-AQ-A04H-01B-11D-A10M-09		12702411	128511020	32	38358										
NPR2	0	genome.wustl.edu	37	chr9	35792632	35792632	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cgaactggaaggcgcctgctCtgagtacctggcaccgctga	13	13	1	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	9	35792632	35792632	C	G	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.227	p.S76C	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	11	0	0	12	6	33.33	-	-	-	G	35792632	C	G	35792632	3	3	355	1	0	0	0	0	1	0	0	0	10668	913	32	2	229	2	NPR2	9	35792632	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	23090221	35792632	105420799	33	38359										
IPPK	0	genome.wustl.edu	37	chr9	95378177	95378177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aaccgagtcgacatcacggcGttgtctttggcacgtacagt	11	11	2	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	9	95378177	95378177	G	A	SNP	IPPK	ENST00000287996	human	ensembl	69_37n	-1	known	silent	c.1413	p.N471	0.000	NULL	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080	208	0	0	184	43	18.94	-	-	-	A	95378177	G	A	95378177	2	1	355	1	0	0	0	0	0	0	0	1	7855	1136	40	1		1	IPPK	9	95378177	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	59585545	95378177	45835254	34	38360										
C9orf171	0	genome.wustl.edu	37	chr9	135374976	135374976	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cctccaaacatgacatttggGatccgggcacggtaaggtgg	13	10	0	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	9	135374976	135374976	G	A	SNP	C9orf171	ENST00000343036	human	ensembl	69_37n	1	known	silent	c.621	p.G207	0.983	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523	26	0	0	29	19	39.58	-	-	-	A	135374976	G	A	135374976	2	1	355	1	0	0	0	0	0	0	0	1	2495	1161	41	2		2	C9orf171	9	135374976	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	39996799	135374976	5838455	35	38361										
RIC8A	0	genome.wustl.edu	37	chr11	212446	212446	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tgaaggagagtgtagctcccGtgctgagcgtgctgactgaa	15	8	0	5			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	11	212446	212446	G	C	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	missense	c.1000	p.V334L	0.993	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	30	0	0	16	6	27.27	-	-	-	C	212446	G	C	212446	3	2	355	1	0	0	0	0	1	0	0	0	13439	1145	40	3	1022	3	RIC8A	11	212446	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		212446	134794070	36	38362										
PGAP2	0	genome.wustl.edu	37	chr11	3845298	3845298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccgctctgccgcctcaacttCggcctcaatgtcgtggagaa	10	15	3	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	11	3845298	3845298	C	T	SNP	PGAP2	ENST00000396993	human	ensembl	69_37n	1	known	missense	c.211	p.R71W	0.002	NULL	NULL	-	no_errors	PGAP2	HGNC	ENSG00000148985	71	0	0	34	13	27.66	-	-	-	T	3845298	C	T	3845298	3	4	355	1	0	0	0	0	1	0	0	0	11852	884	31	1	723	1	PGAP2	11	3845298	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	3632852	3845298	131161218	37	38363										
NAT10	0	genome.wustl.edu	37	chr11	34160944	34160944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccccacagatttccgacggcGgttcctagccttgctctcct	8	17	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	11	34160944	34160944	G	T	SNP	NAT10	ENST00000257829	human	ensembl	69_37n	1	known	missense	c.2321	p.R774L	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	89	0	0	39	50	56.18	-	-	-	T	34160944	G	T	34160944	3	4	355	1	0	0	0	0	1	0	0	0	10246	1116	39	3	2407	3	NAT10	11	34160944	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	30315646	34160944	100845572	38	38364										
PPFIA1	0	genome.wustl.edu	37	chr11	70202345	70202345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gggacaggctgaaaaaaatcGtaaacttcaaaaaaagtaag	9	5	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	11	70202345	70202345	G	A	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	missense	c.2567	p.R856H	0.895	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	162	0	0	311	37	10.63	-	-	-	A	70202345	G	A	70202345	3	1	355	1	0	0	0	0	1	0	0	0	12382	1145	40	1	2637	1	PPFIA1	11	70202345	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	36041401	70202345	64804171	39	38365										
EPS8	0	genome.wustl.edu	37	chr12	15800121	15800121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cagcttccccttggtccaggTgggatcctcttgtgtaaatg	11	11	1	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	12	15800121	15800121	T	C	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	missense	c.1508	p.H503R	0.039	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	131	0	0	69	19	21.35	-	-	-	C	15800121	T	C	15800121	3	2	355	1	0	0	0	0	1	0	0	0	5231	1696	59	5	988	5	EPS8	12	15800121	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09		15800121	118051774	40	38366										
RND1	0	genome.wustl.edu	37	chr12	49251827	49251827	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tccttcttgaaggtagaagaGatgagttcagagcgactggg	14	6	2	5			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	12	49251827	49251827	G	C	SNP	RND1	ENST00000309739	human	ensembl	69_37n	-1	known	missense	c.651	p.I217M	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND1	HGNC	ENSG00000172602	239	0	0	188	57	23.27	-	-	-	C	49251827	G	C	49251827	3	2	355	1	0	0	0	0	1	0	0	0	13505	932	33	2	51	2	RND1	12	49251827	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	33451706	49251827	84600068	41	38367										
CEP290	0	genome.wustl.edu	37	chr12	88442981	88442981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttagtaaatggggaaattaaCaggactttcttcttcatctt	7	6	4	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	12	88442981	88442981	C	T	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.7426	p.V2476I	0.001	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	230	0	0	30	15	33.33	-	-	-	T	88442981	C	T	88442981	3	4	355	1	0	0	0	0	1	0	0	0	3282	478	17	4	23	4	CEP290	12	88442981	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	39191154	88442981	45408914	42	38368										
ATP11A	0	genome.wustl.edu	37	chr13	113439503	113439503	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccatctacgtgggacacaggGagccacctccgggcgcagag	14	14	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	13	113439503	113439503	G	T	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	nonsense	c.94	p.E32*	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	71	0	0	25	20	44.44	-	-	-	T	113439503	G	T	113439503	4	4	355	1	0	0	0	0	0	1	0	0	1123	1175	41	2	100	2	ATP11A	13	113439503	Nonsense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		113439503	1730375	43	38369										
F7	0	genome.wustl.edu	37	chr13	113771834	113771834	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttgtgtggggggaccctgatCaacaccatctgggtggtctc	14	10	3	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	13	113771834	113771834	C	T	SNP	F7	ENST00000375581	human	ensembl	69_37n	1	known	silent	c.729	p.I243	0.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F7	HGNC	ENSG00000057593	102	0	0	58	22	27.5	-	-	-	T	113771834	C	T	113771834	2	4	355	1	0	0	0	0	0	0	0	1	5386	816	29	2		2	F7	13	113771834	Silent	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	332331	113771834	1398044	44	38370										
NIN	0	genome.wustl.edu	37	chr14	51237255	51237255	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	attttttaaggctgctattcGctccttgtactcttcatcca	5	11	2	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	14	51237255	51237255	G	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	nonsense	c.1285	p.R429*	0.934	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	299	0	0	231	54	18.88	-	-	-	A	51237255	G	A	51237255	4	1	355	1	0	0	0	0	0	1	0	0	10489	1095	38	1	5344	1	NIN	14	51237255	Nonsense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		51237255	56112285	45	38371										
OTX2	0	genome.wustl.edu	37	chr14	57269058	57269058	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttggcggcacttagctcttcGattcttaaaccataccttgg	8	11	2	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	14	57269058	57269058	G	A	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	nonsense	c.289	p.R97*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	128	0	0	59	52	46.85	-	-	-	A	57269058	G	A	57269058	4	1	355	1	0	0	0	0	0	1	0	0	11394	1066	37	1	608	1	OTX2	14	57269058	Nonsense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	6031803	57269058	50080482	46	38372										
NRXN3	0	genome.wustl.edu	37	chr14	80328161	80328161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tgtacaagtacaggaacaggGacgaggggtcctatcaagtg	14	7	1	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	14	80328161	80328161	G	A	SNP	NRXN3	ENST00000335750	human	ensembl	69_37n	1	known	missense	c.3040	p.D1014N	1.000	smart_Neurexin-like	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	45	0	0	22	13	37.14	-	-	-	A	80328161	G	A	80328161	3	1	355	1	0	0	0	0	1	0	0	0	10740	1174	41	2	3452	2	NRXN3	14	80328161	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	23059103	80328161	27021379	47	38373										
FLRT2	0	genome.wustl.edu	37	chr14	86089263	86089263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tagggggcatcgttcaggagCgcatagtcagcggtgagaag	17	7	2	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	14	86089263	86089263	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	missense	c.1405	p.R469C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	66	0	0	27	17	38.64	-	-	-	T	86089263	C	T	86089263	3	4	355	1	0	0	0	0	1	0	0	0	5985	768	27	1	1407	1	FLRT2	14	86089263	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	5761102	86089263	21260277	48	38374										
CLDN6	0	genome.wustl.edu	37	chr16	3065517	3065517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gcaacaaaaggcctgaggccGcccagcccaagtagagggag	14	12	0	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	16	3065517	3065517	G	A	SNP	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	missense	c.506	p.A169V	0.994	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	11	0	0	14	6	30	-	-	-	A	3065517	G	A	3065517	3	1	355	1	0	0	0	0	1	0	0	0	3519	1087	38	1	160	1	CLDN6	16	3065517	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		3065517	87289236	49	38375										
ITGAD	0	genome.wustl.edu	37	chr16	31424209	31424209	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ctgcagtattttgggcaggcGctgagtgggggtcaggacct	17	8	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	16	31424209	31424209	G	A	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	1	known	silent	c.1758	p.A586	0.094	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886	53	0	0	23	18	43.9	-	-	-	A	31424209	G	A	31424209	2	1	355	1	0	0	0	0	0	0	0	1	7938	1074	38	1		1	ITGAD	16	31424209	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	28358692	31424209	58930544	50	38376										
ZNF778	0	genome.wustl.edu	37	chr16	89291996	89291996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aaccaaagggccagcacttcGgcaggatagatcttggttca	11	10	2	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	16	89291996	89291996	G	A	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	missense	c.278	p.R93Q	0.004	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	261	0	0	197	66	25.1	-	-	-	A	89291996	G	A	89291996	3	1	355	1	0	0	0	0	1	0	0	0	18244	1116	39	1	292	1	ZNF778	16	89291996	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	57867787	89291996	1062757	51	38377										
TP53	0	genome.wustl.edu	37	chr17	7578259	7578259	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccacacgcaaatttccttccActcggataagatgctgagga	8	12	0	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	17	7578259	7578259	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.590	p.V197G	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	216	2	0.91	44	113	71.97	-	-	-	C	7578259	A	C	7578259	3	2	355	1	0	0	0	0	1	0	0	0	16477	159	6	5	704	5	TP53	17	7578259	Missense_Mutation	SNP	A	TCGA-AQ-A04H-01B-11D-A10M-09		7578259	73616951	52	38378										
RDM1	0	genome.wustl.edu	37	chr17	34249590	34249590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	gacagtcttacctagaacaaCaatcaacagtttctggaatg	7	9	3	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	17	34249590	34249590	C	A	SNP	RDM1	ENST00000293273	human	ensembl	69_37n	-1	known	missense	c.658	p.V220F	0.956	NULL	pfam_RRM_dom,pfam_Rad52_Rad22,pfscan_RRM_dom	-	no_errors	RDM1	HGNC	ENSG00000187456	346	1	0.29	402	59	12.8	-	-	-	A	34249590	C	A	34249590	3	1	355	1	0	0	0	0	1	0	0	0	13280	478	17	4	252	4	RDM1	17	34249590	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	26671331	34249590	46945620	53	38379										
KCNH4	0	genome.wustl.edu	37	chr17	40322182	40322182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cgcgtcggtgttggcacacaCgttgccaaagcccacactgg	12	14	0	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	17	40322182	40322182	C	T	SNP	KCNH4	ENST00000264661	human	ensembl	69_37n	-1	known	missense	c.1333	p.V445M	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558	11	0	0	9	11	55	-	-	-	T	40322182	C	T	40322182	3	4	355	1	0	0	0	0	1	0	0	0	8088	536	19	1	1756	1	KCNH4	17	40322182	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	6072592	40322182	40873028	54	38380										
TEX14	0	genome.wustl.edu	37	chr17	56690897	56690897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	actgtagcaagtaggggtgcCgcagcttgctgcaaaagaaa	13	8	0	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	17	56690897	56690897	C	T	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	missense	c.908	p.R303Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	114	0	0	22	66	75	-	-	-	T	56690897	C	T	56690897	3	4	355	1	0	0	0	0	1	0	0	0	15873	652	23	1	3685	1	TEX14	17	56690897	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	16368715	56690897	24504313	55	38381										
CA4	0	genome.wustl.edu	37	chr17	58234014	58234014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ggtggacaaaaaactgggacGcttcttcttctctggctacg	11	10	3	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	17	58234014	58234014	G	A	SNP	CA4	ENST00000300900	human	ensembl	69_37n	1	known	missense	c.206	p.R69H	0.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA4	HGNC	ENSG00000167434	84	0	0	100	20	16.67	-	-	-	A	58234014	G	A	58234014	3	1	355	1	0	0	0	0	1	0	0	0	2543	1087	38	1	216	1	CA4	17	58234014	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	1543117	58234014	22961196	56	38382										
ANKRD12	0	genome.wustl.edu	37	chr18	9195691	9195691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aaatgaagaacgagattcagAcacaggtagaataatttgct	9	5	1	5			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	18	9195691	9195691	A	G	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.230	p.D77G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	186	0	0	26	14	35	-	-	-	G	9195691	A	G	9195691	3	3	355	1	0	0	0	0	1	0	0	0	640	275	10	5	236	5	ANKRD12	18	9195691	Missense_Mutation	SNP	A	TCGA-AQ-A04H-01B-11D-A10M-09		9195691	68881557	57	38383										
NLRP9	0	genome.wustl.edu	37	chr19	56243838	56243838	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ttgagcaaataaaacatggcGgcacaaaactcttggataca	8	8	1	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	19	56243838	56243838	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	silent	c.1359	p.A453	0.808	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	67	0	0	38	20	34.48	-	-	-	A	56243838	G	A	56243838	2	1	355	1	0	0	0	0	0	0	0	1	10556	1103	39	1		1	NLRP9	19	56243838	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		56243838	2885145	58	38384										
CDS2	0	genome.wustl.edu	37	chr20	5157348	5157348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	taatcactattggctacaacGtctaccactcatatgatctg	5	11	4	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	20	5157348	5157348	G	A	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	1	known	missense	c.346	p.V116I	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	252	0	0	190	95	33.33	-	-	-	A	5157348	G	A	5157348	3	1	355	1	0	0	0	0	1	0	0	0	3207	1145	40	1	360	1	CDS2	20	5157348	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		5157348	57868172	59	38385										
SGK2	0	genome.wustl.edu	37	chr20	42195142	42195142	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	atcattgctacagaatgaacTctagcccagctgggacccca	8	13	2	2			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	20	42195142	42195142	T	C	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	missense	c.187	p.S63P	0.978	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	67	0	0	75	34	31.19	-	-	-	C	42195142	T	C	42195142	3	2	355	1	0	0	0	0	1	0	0	0	14297	1551	54	5	189	5	SGK2	20	42195142	Missense_Mutation	SNP	T	TCGA-AQ-A04H-01B-11D-A10M-09	37037794	42195142	20830378	60	38386										
KCNB1	0	genome.wustl.edu	37	chr20	47989776	47989776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	tcccagggaggcttttggggGggctggagtccacactgtag	17	9	0	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	20	47989776	47989776	G	A	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.2321	p.P774L	1.000	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	184	0	0	175	55	23.91	-	-	-	A	47989776	G	A	47989776	3	1	355	1	0	0	0	0	1	0	0	0	8066	1232	43	4	259	4	KCNB1	20	47989776	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	5794634	47989776	15035744	61	38387										
RAE1	0	genome.wustl.edu	37	chr20	55953115	55953115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	aaaaaattacattttcctgcGtaatgcagccgaagagctaa	7	8	0	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	20	55953115	55953115	G	A	SNP	RAE1	ENST00000371242	human	ensembl	69_37n	1	known	missense	c.1067	p.R356H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	222	1	0.45	299	47	13.58	-	-	-	A	55953115	G	A	55953115	3	1	355	1	0	0	0	0	1	0	0	0	13081	1145	40	1	1109	1	RAE1	20	55953115	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	7963339	55953115	7072405	62	38388										
SHOX	0	genome.wustl.edu	37	chrX	591785	591785	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cgctcccgggagctggggacGtcggattccagcctccagga	15	14	0	0			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	X	591785	591785	G	A	SNP	SHOX	ENST00000381578	human	ensembl	69_37n	1	known	silent	c.153	p.T51	0.978	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960	78	0	0	42	19	31.15	-	-	-	A	591785	G	A	591785	2	1	355	1	0	0	0	0	0	0	0	1	14377	1132	40	1		1	SHOX	23	591785	Silent	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09		591785	154678775	63	38389										
GPR64	0	genome.wustl.edu	37	chrX	19017274	19017274	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	cgctgggctcccagttgcttCttctttttaattcgacagag	9	11	2	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	X	19017274	19017274	C	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.2454	p.K818N	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	239	0	0	116	66	36.07	-	-	-	A	19017274	C	A	19017274	3	1	355	1	0	0	0	0	1	0	0	0	6755	912	32	2	615	2	GPR64	23	19017274	Missense_Mutation	SNP	C	TCGA-AQ-A04H-01B-11D-A10M-09	18425489	19017274	136253286	64	38390										
RPGR	0	genome.wustl.edu	37	chrX	38145650	38145651	+	Frame_Shift_Ins	INS	-	-	T													0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	ccttcctccccttcttcctcINScccttctccttcttcccctt							TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	X	38145650	38145651	-	T	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2602_2601	p.E867fs	0.002:0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	44	0	0	6	4	40	-	-	-	T	38145651	-	T	38145650	7	5	355	1	0	1	1	0	0	0	0	0	13634	864	30	0	1419	0	RPGR	23	38145650	Frame_Shift_Ins	INS	-	TCGA-AQ-A04H-01B-11D-A10M-09	19128376	38145650	117124910	65	38391										
MAGEC2	0	genome.wustl.edu	37	chrX	141290906	141290906	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	3	1	0.513457015939378	2.45318352059925	0.19890677194048	1	1	0	atatggaggagaactgtgggGcacctcccgatactccaggt	13	10	0	1			TCGA-AQ-A04H-01B-11D-A10M-09	TCGA-AQ-A04H-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73c13e04-1400-4ebb-aa80-f54becbe036c	751944ed-705b-43b8-99fc-a49a6514941d	X	141290906	141290906	G	C	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.868	p.P290A	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	96	0	0	52	37	41.57	-	-	-	C	141290906	G	C	141290906	3	2	355	1	0	0	0	0	1	0	0	0	9252	1203	42	4	257	4	MAGEC2	23	141290906	Missense_Mutation	SNP	G	TCGA-AQ-A04H-01B-11D-A10M-09	103145256	141290906	13979654	66	38392										
GPR153	0	genome.wustl.edu	37	chr1	6314757	6314758	+	Frame_Shift_Ins	INS	-	-	A													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gaagtcggggcgctgccgccINSgcagctgcaccacggagtag							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	6314757	6314758	-	A	INS	GPR153	ENST00000377893	human	ensembl	69_37n	-1	known	frame_shift_ins	c.209_208	p.R70fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153,prints_GPCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	59	0	0	52	26	33.33	-	-	-	A	6314758	-	A	6314757	7	5	356	1	0	1	1	0	0	0	0	0	6709	652	23	0	1640	0	GPR153	1	6314757	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		6314757	242935864	1	38393										
ANP32E	0	genome.wustl.edu	37	chr1	150202960	150202960	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tttccactcagattgaggtaGgtaagatttggacatttctc	9	7	2	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	150202960	150202960	G	C	SNP	ANP32E	ENST00000314136	human	ensembl	69_37n	-1	known	silent	c.273	p.T91	0.996	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401	128	0	0	109	69	38.76	-	-	-	C	150202960	G	C	150202960	2	2	356	1	0	0	0	0	0	0	0	1	708	987	35	4		4	ANP32E	1	150202960	Silent	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	143888203	150202960	99047661	2	38394										
PEAR1	0	genome.wustl.edu	37	chr1	156874573	156874573	+	Frame_Shift_Del	DEL	C	C	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	accaaggagtcccactcccgCcccttcagcctgctcccctc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	156874573	156874573	C	-	DEL	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	frame_shift_del	c.135	p.F47fs	0.792	pfscan_EMI_domain	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	128	0	0	107	17	13.6	-	-	-	-	156874573	C	-	156874573	7	5	356	1	0	1	0	1	0	0	0	0	11785	726	26	0	141	0	PEAR1	1	156874573	Frame_Shift_Del	DEL	C	TCGA-AQ-A04J-01A-02W-A050-09	6671613	156874573	92376048	3	38395										
IFI16	0	genome.wustl.edu	37	chr1	159021843	159021843	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	aaaatcaatcagctttgctcAcaaactaaaggaagttttgt	6	7	3	0			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	159021843	159021843	A	G	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	silent	c.2040	p.S680	0.001	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	79	0	0	60	16	21.05	-	-	-	G	159021843	A	G	159021843	2	3	356	1	0	0	0	0	0	0	0	1	7565	146	6	5		5	IFI16	1	159021843	Silent	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	2147270	159021843	90228778	4	38396										
ATP1A2	0	genome.wustl.edu	37	chr1	160098503	160098503	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ctgcctggtgaagaacctggAggcggtggagacgctgggct	18	9	0	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	160098503	160098503	A	G	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.1079	p.E360G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	242	0	0	229	41	15.19	-	-	-	G	160098503	A	G	160098503	3	3	356	1	0	0	0	0	1	0	0	0	1133	304	11	5	1113	5	ATP1A2	1	160098503	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	1076660	160098503	89152118	5	38397										
ACTA1	0	genome.wustl.edu	37	chr1	229567889	229567890	+	Frame_Shift_Del	DEL	GT	GT	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ttctcgaagtccagggccacGtagcacagcttctccttgat							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	229567889	229567890	GT	-	DEL	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	frame_shift_del	c.660_659	p.Y220fs	0.998:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	52	0	0	29	63	67.02	-	-	-	-	229567890	GT	-	229567889	7	5	356	1	0	1	0	1	0	0	0	0	191	1140	40	0	485	0	ACTA1	1	229567889	Frame_Shift_Del	DEL	GT	TCGA-AQ-A04J-01A-02W-A050-09	69469386	229567889	19682732	6	38398	312	3								
ACTA1	0	genome.wustl.edu	37	chr1	229567893	229567894	+	Frame_Shift_Del	DEL	CA	CA	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cgaagtccagggccacgtagCacagcttctccttgatgtcg							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	229567893	229567894	CA	-	DEL	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	frame_shift_del	c.656_655	p.C219fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	53	0	0	29	62	68.13	-	-	-	-	229567894	CA	-	229567893	7	5	356	1	0	1	0	1	0	0	0	0	191	710	25	0	489	0	ACTA1	1	229567893	Frame_Shift_Del	DEL	CA	TCGA-AQ-A04J-01A-02W-A050-09	4	229567893	19682728	7	38399	312	3								
ACTA1	0	genome.wustl.edu	37	chr1	229567901	229567901	+	Frame_Shift_Del	DEL	C	C	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	agggccacgtagcacagcttCtccttgatgtcgcgcacgat							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	229567901	229567901	C	-	DEL	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	frame_shift_del	c.648	p.K217fs	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	50	0	0	28	57	64.04	-	-	-	-	229567901	C	-	229567901	7	5	356	1	0	1	0	1	0	0	0	0	191	912	32	0	497	0	ACTA1	1	229567901	Frame_Shift_Del	DEL	C	TCGA-AQ-A04J-01A-02W-A050-09	8	229567901	19682720	8	38400	312	3								
SUPT7L	0	genome.wustl.edu	37	chr2	27876562	27876562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ccttcttcactttcttgaggCtccattttcacatgggccag	7	13	4	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	27876562	27876562	C	T	SNP	SUPT7L	ENST00000337768	human	ensembl	69_37n	-1	known	silent	c.1035	p.E345	1.000	NULL	pfam_BTP,smart_BTP	-	no_errors	SUPT7L	HGNC	ENSG00000119760	334	0	0	208	68	24.64	-	-	-	T	27876562	C	T	27876562	2	4	356	1	0	0	0	0	0	0	0	1	15492	796	28	4		4	SUPT7L	2	27876562	Silent	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09		27876562	215322811	9	38401										
SRBD1	0	genome.wustl.edu	37	chr2	45812872	45812872	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ttaaagagacgaatgatgttGgcacaaacccaaggttcaat	9	7	1	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	45812872	45812872	G	A	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	silent	c.690	p.A230	1.000	pfam_Tex-like_N	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	191	0	0	83	22	20.95	-	-	-	A	45812872	G	A	45812872	2	1	356	1	0	0	0	0	0	0	0	1	15224	1335	47	4		4	SRBD1	2	45812872	Silent	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	17936310	45812872	197386501	10	38402										
ALMS1	0	genome.wustl.edu	37	chr2	73675332	73675332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	aagtcacagctattcctgaaCcagctgaccagaagactgca	8	12	1	4			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	73675332	73675332	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1675	p.P559S	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	201	0	0	131	69	34.5	-	-	-	T	73675332	C	T	73675332	3	4	356	1	0	0	0	0	1	0	0	0	535	507	18	4	1705	4	ALMS1	2	73675332	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	27862460	73675332	169524041	11	38403										
XIRP2	0	genome.wustl.edu	37	chr2	168101657	168101657	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ccaaccaattgataagataaAagaaagccaagaaggtgatg	9	6	0	5			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	168101657	168101657	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.3755	p.K1252R	0.997	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	391	0	0	296	66	18.13	-	-	-	G	168101657	A	G	168101657	3	3	356	1	0	0	0	0	1	0	0	0	17527	14	1	5	3785	5	XIRP2	2	168101657	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	94426325	168101657	75097716	12	38404										
BZW1	0	genome.wustl.edu	37	chr2	201683608	201683608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ggagcttgtagcagagcaagCcatcaagcacttgaaggtat	12	8	1	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	201683608	201683608	C	G	SNP	BZW1	ENST00000409600	human	ensembl	69_37n	1	known	missense	c.950	p.A317G	1.000	superfamily_ARM-type_fold	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153	83	0	0	55	13	19.12	-	-	-	G	201683608	C	G	201683608	3	3	356	1	0	0	0	0	1	0	0	0	1587	754	26	4		4	BZW1	2	201683608	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	33581951	201683608	41515765	13	38405										
OBSL1	0	genome.wustl.edu	37	chr2	220432023	220432023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcagaaccgtggaacaccacGtggggactacggccatgtcc	13	13	0	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	220432023	220432023	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.1809	p.H603	0.833	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	76	0	0	47	10	17.54	-	-	-	A	220432023	G	A	220432023	2	1	356	1	0	0	0	0	0	0	0	1	10886	1136	40	1		1	OBSL1	2	220432023	Silent	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	18748415	220432023	22767350	14	38406										
VILL	0	genome.wustl.edu	37	chr3	38039624	38039625	+	Frame_Shift_Ins	INS	-	-	C													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ggtggtcctggagttggcgaINScccccccactgacccaggac							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	38039624	38039625	-	C	INS	VILL	ENST00000283713	human	ensembl	69_37n	1	known	frame_shift_ins	c.808_809	p.L273fs	0.589:0.638	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	116	1	0.85	33	4	10.81	-	-	-	C	38039625	-	C	38039624	7	5	356	1	0	1	1	0	0	0	0	0	17262	275	10	0	834	0	VILL	3	38039624	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		38039624	159982806	15	38407										
STAB1	0	genome.wustl.edu	37	chr3	52544472	52544472	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gacgagtgtgagctggacatGagaggtggctgccacaccga	16	9	0	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	52544472	52544472	G	C	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.2736	p.M912I	0.000	smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	34	0	0	21	6	22.22	-	-	-	C	52544472	G	C	52544472	3	2	356	1	0	0	0	0	1	0	0	0	15328	1290	45	2	2834	2	STAB1	3	52544472	Missense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	14504848	52544472	145477958	16	38408										
RPN1	0	genome.wustl.edu	37	chr3	128369504	128369505	+	Frame_Shift_Ins	INS	-	-	AA													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cacctcggccgtcaccttagINSccaggtggctgcttaggtcc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	128369504	128369505	-	AA	INS	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	frame_shift_ins	c.140_139	p.A47fs	1.000:1.000	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	19	0	0	24	9	27.27	-	-	-	AA	128369505	-	AA	128369504	7	5	356	1	0	1	1	0	0	0	0	0	13693	971	34	0	1723	0	RPN1	3	128369504	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09	75825032	128369504	69652926	17	38409	313	2								
RPN1	0	genome.wustl.edu	37	chr3	128369512	128369513	+	Frame_Shift_Del	DEL	GC	GC	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gccgtcaccttagccaggtgGctgcttaggtccactgtgcg							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	128369512	128369513	GC	-	DEL	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	frame_shift_del	c.132_131	p.S44fs	1.000:1.000	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	16	0	0	20	9	31.03	-	-	-	-	128369513	GC	-	128369512	7	5	356	1	0	1	0	1	0	0	0	0	13693	1194	42	0	1731	0	RPN1	3	128369512	Frame_Shift_Del	DEL	GC	TCGA-AQ-A04J-01A-02W-A050-09	8	128369512	69652918	18	38410	313	2								
UBA5	0	genome.wustl.edu	37	chr3	132379431	132379431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcgggtccaggagctggagcGggaacttgcccaggagagga	19	9	0	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	132379431	132379431	G	A	SNP	UBA5	ENST00000356232	human	ensembl	69_37n	1	known	missense	c.50	p.R17Q	0.994	NULL	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA5	HGNC	ENSG00000081307	59	0	0	33	10	23.26	-	-	-	A	132379431	G	A	132379431	3	1	356	1	0	0	0	0	1	0	0	0	16927	1116	39	1	52	1	UBA5	3	132379431	Missense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	4009919	132379431	65642999	19	38411										
ZNF518B	0	genome.wustl.edu	37	chr4	10447420	10447420	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tgtgtttcaccaaatgcctcTgaaactctcctttcgtatac	5	12	3	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	10447420	10447420	T	A	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.533	p.Q178L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	121	0	0	72	21	22.58	-	-	-	A	10447420	T	A	10447420	3	1	356	1	0	0	0	0	1	0	0	0	18059	1580	55	5	2695	5	ZNF518B	4	10447420	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09		10447420	180706856	20	38412										
LARP7	0	genome.wustl.edu	37	chr4	113567531	113567531	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tgatatatcactacttgtgtCttttaacaaaatgaaaaaat	4	5	2	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	113567531	113567531	C	A	SNP	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	missense	c.227	p.S76Y	0.983	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	116	0	0	70	24	25.53	-	-	-	A	113567531	C	A	113567531	3	1	356	1	0	0	0	0	1	0	0	0	8687	913	32	2	233	2	LARP7	4	113567531	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	103120111	113567531	77586745	21	38413										
DCHS2	0	genome.wustl.edu	37	chr4	155160373	155160373	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	agaggatagaattctgtaagAaatgttctcattgctttcta	8	5	3	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	155160373	155160373	A	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.6076	p.S2026A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	219	0	0	147	38	20.43	-	-	-	C	155160373	A	C	155160373	3	2	356	1	0	0	0	0	1	0	0	0	4319	246	9	5	2682	5	DCHS2	4	155160373	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	41592842	155160373	35993903	22	38414										
ISOC1	0	genome.wustl.edu	37	chr5	128448599	128448599	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cgagtgaggctgttctgcttCagctggtagctgataaggac	14	8	2	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	5	128448599	128448599	C	T	SNP	ISOC1	ENST00000173527	human	ensembl	69_37n	1	known	nonsense	c.802	p.Q268*	1.000	superfamily_Isochorismatase-like	pfam_Isochorismatase-like,superfamily_Isochorismatase-like	-	no_errors	ISOC1	HGNC	ENSG00000066583	213	0	0	59	31	34.44	-	-	-	T	128448599	C	T	128448599	4	4	356	1	0	0	0	0	0	1	0	0	7916	827	29	2	820	2	ISOC1	5	128448599	Nonsense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09		128448599	52466661	23	38415										
MUC21	0	genome.wustl.edu	37	chr6	30955398	30955398	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gtgccgtgggaaatcttcctCatcaccctggtctcggttgt	11	12	4	0			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	30955398	30955398	C	A	SNP	MUC21	ENST00000376296	human	ensembl	69_37n	1	known	silent	c.1446	p.L482	1.000	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	382	0	0	188	50	21.01	-	-	-	A	30955398	C	A	30955398	2	1	356	1	0	0	0	0	0	0	0	1	10049	813	29	2		2	MUC21	6	30955398	Silent	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09		30955398	140159669	24	38416										
FOXP4	0	genome.wustl.edu	37	chr6	41557744	41557745	+	Frame_Shift_Del	DEL	TC	TC	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ctcattctccaaggtgaccgTctctgcagcagactcattcc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	41557744	41557745	TC	-	DEL	FOXP4	ENST00000307972	human	ensembl	69_37n	1	known	frame_shift_del	c.1193_1194	p.S399fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166	33	0	0	41	8	16.33	-	-	-	-	41557745	TC	-	41557744	7	5	356	1	0	1	0	1	0	0	0	0	6077	1667	58	0	1231	0	FOXP4	6	41557744	Frame_Shift_Del	DEL	TC	TCGA-AQ-A04J-01A-02W-A050-09	10602346	41557744	129557323	25	38417										
SOBP	0	genome.wustl.edu	37	chr6	107908293	107908293	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tttcccttcaggctagagatGaagatggacatgctgaaaat	10	7	1	4			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	107908293	107908293	G	T	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	1	known	nonsense	c.583	p.E195*	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	142	0	0	137	25	15.34	-	-	-	T	107908293	G	T	107908293	4	4	356	1	0	0	0	0	0	1	0	0	15001	1291	45	2	601	2	SOBP	6	107908293	Nonsense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	66350549	107908293	63206774	26	38418										
USP42	0	genome.wustl.edu	37	chr7	6196533	6196533	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	acttacccagggtcaccagcTtggagactgtcgcccagttc	10	14	1	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	7	6196533	6196533	T	G	SNP	USP42	ENST00000306177	human	ensembl	69_37n	1	known	missense	c.3790	p.L1264V	0.002	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP42	HGNC	ENSG00000106346	135	0	0	60	58	49.15	-	-	-	G	6196533	T	G	6196533	3	3	356	1	0	0	0	0	1	0	0	0	17170	1606	56	5	2404	5	USP42	7	6196533	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09		6196533	152942130	27	38419										
CLIP2	0	genome.wustl.edu	37	chr7	73803543	73803544	+	Frame_Shift_Ins	INS	-	-	G													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ccggaagacccatgacgcctINScgggccagctagtcctcatc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	7	73803543	73803544	-	G	INS	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	frame_shift_ins	c.2674_2675	p.S892fs	1.000:0.998	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	53	0	0	77	45	36.89	-	-	-	G	73803544	-	G	73803543	7	5	356	1	0	1	1	0	0	0	0	0	3563	1551	54	0	2720	0	CLIP2	7	73803543	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09	67607010	73803543	85335120	28	38420	314	2								
CLIP2	0	genome.wustl.edu	37	chr7	73803546	73803547	+	Frame_Shift_Ins	INS	-	-	T													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gaagacccatgacgcctcggINSgccagctagtcctcatcagc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	7	73803546	73803547	-	T	INS	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	frame_shift_ins	c.2677_2678	p.G893fs	1.000:1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	49	0	0	57	45	44.12	-	-	-	T	73803547	-	T	73803546	7	5	356	1	0	1	1	0	0	0	0	0	3563	1232	43	0	2723	0	CLIP2	7	73803546	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09	3	73803546	85335117	29	38421	314	2								
CYP7B1	0	genome.wustl.edu	37	chr8	65528565	65528565	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tgcagaatggatacagttctGccgtgtcccaacttgtggtt	11	9	1	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	8	65528565	65528565	G	T	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	missense	c.533	p.A178E	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	69	0	0	78	11	12.36	-	-	-	T	65528565	G	T	65528565	3	4	356	1	0	0	0	0	1	0	0	0	4228	1319	46	4	1003	4	CYP7B1	8	65528565	Missense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09		65528565	80835457	30	38422										
OXR1	0	genome.wustl.edu	37	chr8	107718659	107718659	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tctgccattcaaagaaaatgAcaggaagtaacactgaggaa	9	7	2	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	8	107718659	107718659	A	C	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.913	p.T305P	0.104	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	77	0	0	63	23	26.74	-	-	-	C	107718659	A	C	107718659	3	2	356	1	0	0	0	0	1	0	0	0	11407	275	10	5	1143	5	OXR1	8	107718659	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	42190094	107718659	38645363	31	38423										
C9orf66	0	genome.wustl.edu	37	chr9	214629	214630	+	Frame_Shift_Ins	INS	-	-	C													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tccggcctgcgcgcagtggtINScgcctgtcgtccgcccgcgc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	9	214629	214630	-	C	INS	C9orf66	ENST00000382387	human	ensembl	69_37n	-1	known	frame_shift_ins	c.768_767	p.P257fs	0.123:0.141	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784	29	0	0	29	13	30.95	-	-	-	C	214630	-	C	214629	7	5	356	1	0	1	1	0	0	0	0	0	2515	1654	58	0	123	0	C9orf66	9	214629	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		214629	140998802	32	38424										
ERMP1	0	genome.wustl.edu	37	chr9	5805716	5805716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tccttggtaagtgagggtaaCaagaaaacagcaatggacaa	11	6	0	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	9	5805716	5805716	C	A	SNP	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	missense	c.1618	p.V540F	0.012	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	357	0	0	363	67	15.55	-	-	-	A	5805716	C	A	5805716	3	1	356	1	0	0	0	0	1	0	0	0	5273	478	17	4	1124	4	ERMP1	9	5805716	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	5591087	5805716	135407715	33	38425										
CNNM2	0	genome.wustl.edu	37	chr10	104679069	104679070	+	Frame_Shift_Ins	INS	-	-	T													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gttcagcggcctcaacctggINSggctcatggccctggacccg							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	10	104679069	104679070	-	T	INS	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	frame_shift_ins	c.832_833	p.G278fs	1.000:1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	27	0	0	19	18	48.65	-	-	-	T	104679070	-	T	104679069	7	5	356	1	0	1	1	0	0	0	0	0	3643	1232	43	0	834	0	CNNM2	10	104679069	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		104679069	30855678	34	38426										
ANO5	0	genome.wustl.edu	37	chr11	22294371	22294371	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cactatttgtggcctcttttCctttggctcctcttcttgct	6	13	3	0			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	22294371	22294371	C	A	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.2071	p.P691T	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	496	0	0	284	68	19.26	-	-	-	A	22294371	C	A	22294371	3	1	356	1	0	0	0	0	1	0	0	0	699	855	30	2	2145	2	ANO5	11	22294371	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09		22294371	112712145	35	38427										
LRRC4C	0	genome.wustl.edu	37	chr11	40136678	40136678	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tgtcatgactgttccatttgGagtaatccaagatacagatg	9	7	1	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	40136678	40136678	G	C	SNP	LRRC4C	ENST00000527150	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389A	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	LRRC4C	HGNC	ENSG00000148948	108	0	0	51	19	27.14	-	-	-	C	40136678	G	C	40136678	3	2	356	1	0	0	0	0	1	0	0	0	9074	1174	41	2	761	2	LRRC4C	11	40136678	Missense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	17842307	40136678	94869838	36	38428										
CRY2	0	genome.wustl.edu	37	chr11	45880386	45880386	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	aaggaggctggtgtggaagtAgtgacggagaattctcatac	15	5	1	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	45880386	45880386	A	T	SNP	CRY2	ENST00000443527	human	ensembl	69_37n	1	known	silent	c.492	p.V164	1.000	pfam_DNA_photolyase_N,superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	174	0	0	96	26	21.31	-	-	-	T	45880386	A	T	45880386	2	4	356	1	0	0	0	0	0	0	0	1	3934	407	15	5		5	CRY2	11	45880386	Silent	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	5743708	45880386	89126130	37	38429										
MAP3K12	0	genome.wustl.edu	37	chr12	53879958	53879958	+	Frame_Shift_Del	DEL	G	G	-													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gacagggcggccagcccgcaGtacctcatacagctggccct							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	12	53879958	53879958	G	-	DEL	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	frame_shift_del	c.604	p.L202fs	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	83	0	0	60	63	49.61	-	-	-	-	53879958	G	-	53879958	7	5	356	1	0	1	0	1	0	0	0	0	9317	1020	36	0	2019	0	MAP3K12	12	53879958	Frame_Shift_Del	DEL	G	TCGA-AQ-A04J-01A-02W-A050-09		53879958	79971937	38	38430										
DTX1	0	genome.wustl.edu	37	chr12	113515623	113515623	+	Missense_Mutation	SNP	C	C	G													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cgcgccgcctccaacgccatCctggcctcgcagcgccgcaa							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	12	113515623	113515623	C	G	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	missense	c.654	p.I218M	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	8	0	0	8	5	38.46	-	-	-	G	113515623	C	G	113515623	3	3	356	1	0	0	0	0	1	0	0	0	4828	845	30	2	660	2	DTX1	12	113515623	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	59635665	113515623	20336272	39	38431	315	2								
DTX1	0	genome.wustl.edu	37	chr12	113515624	113515624	+	Silent	SNP	C	C	T													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcgccgcctccaacgccatcCtggcctcgcagcgccgcaag							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	12	113515624	113515624	C	T	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	silent	c.655	p.L219	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	8	0	0	7	4	36.36	-	-	-	T	113515624	C	T	113515624	2	4	356	1	0	0	0	0	0	0	0	1	4828	680	24	4		4	DTX1	12	113515624	Silent	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	1	113515624	20336271	40	38432	315	2								
LRRC16B	0	genome.wustl.edu	37	chr14	24534915	24534915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ttcacggtgttgcccttcccGggttggaaagagccaagggt	14	10	1	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	24534915	24534915	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.3481	p.G1161R	0.977	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	155	0	0	75	19	20.21	-	-	-	A	24534915	G	A	24534915	3	1	356	1	0	0	0	0	1	0	0	0	9038	1116	39	1	3615	1	LRRC16B	14	24534915	Missense_Mutation	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09		24534915	82814625	41	38433										
GZMH	0	genome.wustl.edu	37	chr14	25075891	25075891	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ctggaggtgtcccttttttgTttccataggagagaatacct	10	8	0	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	25075891	25075891	T	A	SNP	GZMH	ENST00000216338	human	ensembl	69_37n	-1	known	missense	c.659	p.N220I	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMH	HGNC	ENSG00000100450	234	0	0	117	30	20.41	-	-	-	A	25075891	T	A	25075891	3	1	356	1	0	0	0	0	1	0	0	0	6968	1725	60	5	85	5	GZMH	14	25075891	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09	540976	25075891	82273649	42	38434										
NIN	0	genome.wustl.edu	37	chr14	51228556	51228556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	catatgtccctgtgatgttgTtctttcatctgttcaatgac	7	9	4	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	51228556	51228556	T	C	SNP	NIN	ENST00000530997	human	ensembl	69_37n	-1	putative	missense	c.319	p.T107A	0.984	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NIN	HGNC	ENSG00000100503	164	1	0.61	128	22	14.67	-	-	-	C	51228556	T	C	51228556	3	2	356	1	0	0	0	0	1	0	0	0	10489	1722	60	5	4765	5	NIN	14	51228556	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09	26152665	51228556	56120984	43	38435										
NIN	0	genome.wustl.edu	37	chr14	51238049	51238049	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cgaaccttctgctcaactcaCaacaaatgccggatttcagc	6	14	4	0			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	51238049	51238049	C	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	splice_site	c.1118+1	e8+1	1.000	-	-	-	no_errors	NIN	HGNC	ENSG00000100503	293	0	0	165	49	22.9	-	-	-	A	51238049	C	A	51238049	5	1	356	1	0	0	0	0	0	0	1	0	10489	492	17	4	5518	4	NIN	14	51238049	Splice_Site	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	9493	51238049	56111491	44	38436										
ARHGAP11B	0	genome.wustl.edu	37	chr15	31042620	31042621	+	RNA	INS	-	-	A													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcagatggatggtttctagtINSgtgcttccaaaccccacctc							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	15	31042620	31042621	-	A	INS	ARHGAP11B	ENST00000562954	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ARHGAP11B	HGNC	ENSG00000187951	74	0	0	40	6	13.04	-	-	-	A	31042621	-	A	31042620	6	5	356	0	1	1	1	0	0	0	0	0	866	1711	59	0		0	ARHGAP11B	15	31042620	RNA	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		31042620	71488772	45	38437										
TSR1	0	genome.wustl.edu	37	chr17	2236988	2236988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	taagaccttcttccatatcaTctacagcatccgtagcacaa	4	13	3	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	17	2236988	2236988	T	C	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1004	p.D335G	0.001	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	120	0	0	102	16	13.56	-	-	-	C	2236988	T	C	2236988	3	2	356	1	0	0	0	0	1	0	0	0	16760	1435	50	5	1450	5	TSR1	17	2236988	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09		2236988	78958222	46	38438										
TP53	0	genome.wustl.edu	37	chr17	7579355	7579355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tcccagaatgcaagaagcccAgacggaaaccgtagctgccc	10	14	0	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	17	7579355	7579355	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.332	p.L111P	0.684	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	142	0	0	118	43	26.54	-	-	-	G	7579355	A	G	7579355	3	3	356	1	0	0	0	0	1	0	0	0	16477	188	7	5	970	5	TP53	17	7579355	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	5342367	7579355	73615855	47	38439										
TMC6	0	genome.wustl.edu	37	chr17	76109253	76109253	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcatcctgttcatctgtgagCagggcagggggtgccgcagc	16	11	2	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	17	76109253	76109253	C	T	SNP	TMC6	ENST00000322914	human	ensembl	69_37n	-1	known	silent	c.2394	p.L798	0.000	NULL	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524	28	0	0	14	4	21.05	-	-	-	T	76109253	C	T	76109253	2	4	356	1	0	0	0	0	0	0	0	1	16084	697	25	4		4	TMC6	17	76109253	Silent	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	68529898	76109253	5085957	48	38440										
ZNF878	0	genome.wustl.edu	37	chr19	12154855	12154855	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tgaaggcttttccacattgcTtacactcatagggtttctct	7	10	2	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	12154855	12154855	T	A	SNP	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	missense	c.1361	p.K454M	0.008	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	111	0	0	97	22	18.49	-	-	-	A	12154855	T	A	12154855	3	1	356	1	0	0	0	0	1	0	0	0	18289	1609	56	5	238	5	ZNF878	19	12154855	Missense_Mutation	SNP	T	TCGA-AQ-A04J-01A-02W-A050-09		12154855	46974128	49	38441										
PDE4C	0	genome.wustl.edu	37	chr19	18332958	18332958	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tcacaggtcgctggccacagAggagttccgagacatggcct	13	12	1	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	18332958	18332958	A	T	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	missense	c.418	p.S140T	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	68	0	0	51	14	21.21	-	-	-	T	18332958	A	T	18332958	3	4	356	1	0	0	0	0	1	0	0	0	11714	304	11	5	1776	5	PDE4C	19	18332958	Missense_Mutation	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09	6178103	18332958	40796025	50	38442										
SYNGR4	0	genome.wustl.edu	37	chr19	48879441	48879441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcatggtgctgaccaccctcCccttgccctctgccaacagc	8	19	1	1			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	48879441	48879441	C	T	SNP	SYNGR4	ENST00000344846	human	ensembl	69_37n	1	known	missense	c.571	p.P191S	0.998	pirsf_Synaptogyrin	pfam_MARVEL-like_dom,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467	107	0	0	89	20	18.35	-	-	-	T	48879441	C	T	48879441	3	4	356	1	0	0	0	0	1	0	0	0	15543	623	22	4	585	4	SYNGR4	19	48879441	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09	30546483	48879441	10249542	51	38443										
GPCPD1	0	genome.wustl.edu	37	chr20	5556511	5556511	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	tttctgctcatgatgggaagAgtaagaattccagcactctt	9	8	3	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	20	5556511	5556511	A	C	SNP	GPCPD1	ENST00000379019	human	ensembl	69_37n	-1	known	silent	c.819	p.T273	0.931	NULL	pfam_GlyceroP-diester-Pdiesterase,pfam_CBM_fam20,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	-	no_errors	GPCPD1	HGNC	ENSG00000125772	155	0	0	146	33	18.33	-	-	-	C	5556511	A	C	5556511	2	2	356	1	0	0	0	0	0	0	0	1	6653	291	11	5		5	GPCPD1	20	5556511	Silent	SNP	A	TCGA-AQ-A04J-01A-02W-A050-09		5556511	57469009	52	38444										
TRPC4AP	0	genome.wustl.edu	37	chr20	33623023	33623023	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	cactcttccaactcctgaagGaagctggctgtgcccgttga	10	13	1	2			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	20	33623023	33623023	G	A	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	silent	c.954	p.F318	1.000	NULL	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	155	0	0	63	11	14.86	-	-	-	A	33623023	G	A	33623023	2	1	356	1	0	0	0	0	0	0	0	1	16677	1165	41	2		2	TRPC4AP	20	33623023	Silent	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09	28066512	33623023	29402497	53	38445										
SON	0	genome.wustl.edu	37	chr21	34922545	34922545	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gagtcatctgcaattgaagcGctaagattgccagagcagcc	11	10	2	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	21	34922545	34922545	G	T	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	silent	c.1008	p.A336	0.715	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	82	0	0	30	11	26.19	-	-	-	T	34922545	G	T	34922545	2	4	356	1	0	0	0	0	0	0	0	1	15015	1074	38	3		3	SON	21	34922545	Silent	SNP	G	TCGA-AQ-A04J-01A-02W-A050-09		34922545	13207350	54	38446										
MLC1	0	genome.wustl.edu	37	chr22	50523318	50523319	+	Frame_Shift_Ins	INS	-	-	A													0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	ggccagctcctctctgaatgINSgctcctgggtcatggcactt							TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	22	50523318	50523319	-	A	INS	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	frame_shift_ins	c.14_13	p.P5fs	0.011:0.241	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	37	0	0	72	101	58.38	-	-	-	A	50523319	-	A	50523318	7	5	356	1	0	1	1	0	0	0	0	0	9683	1348	47	0	1163	0	MLC1	22	50523318	Frame_Shift_Ins	INS	-	TCGA-AQ-A04J-01A-02W-A050-09		50523318	781248	55	38447										
KCND1	0	genome.wustl.edu	37	chrX	48825777	48825777	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0392156862745098	2	0.98084598061592	0.765656565656566	1.14848484848485	0.574242424242424	1	1	0	gcctggagaacttgaagatgCgaaacacccggaacacacgc	11	12	0	3			TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	X	48825777	48825777	C	G	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.902	p.R301P	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	130	0	0	82	13	13.68	-	-	-	G	48825777	C	G	48825777	3	3	356	1	0	0	0	0	1	0	0	0	8072	768	27	3	1065	3	KCND1	23	48825777	Missense_Mutation	SNP	C	TCGA-AQ-A04J-01A-02W-A050-09		48825777	106444783	56	38448										
SLC5A9	0	genome.wustl.edu	37	chr1	48698155	48698155	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	atcgtcatgcctggcatgatCagccgggccctgttcccagg	12	14	2	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	1	48698155	48698155	C	T	SNP	SLC5A9	ENST00000425816	human	ensembl	69_37n	1	known	nonsense	c.808	p.Q270*	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	32	0	0	74	22	22.92	-	-	-	T	48698155	C	T	48698155	4	4	357	1	0	0	0	0	0	1	0	0	14761	816	29	2	1123	2	SLC5A9	1	48698155	Nonsense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		48698155	200552466	1	38449										
RPAP2	0	genome.wustl.edu	37	chr1	92801915	92801915	+	Frame_Shift_Del	DEL	T	T	-													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	aattttcaggttgcctgggcTtctggttcctcttcagatta							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	1	92801915	92801915	T	-	DEL	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	frame_shift_del	c.1550	p.L518fs	1.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	63	0	0	80	33	28.45	-	-	-	-	92801915	T	-	92801915	7	5	357	1	0	1	0	1	0	0	0	0	13628	1609	56	0	1588	0	RPAP2	1	92801915	Frame_Shift_Del	DEL	T	TCGA-AQ-A04L-01B-21D-A10M-09	44103760	92801915	156448706	2	38450										
PRR21	0	genome.wustl.edu	37	chr2	240982144	240982144	+	Frame_Shift_Del	DEL	T	T	-													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	aagaggcatggatgaaggacTgtgggtgaagagccgtggat							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	2	240982144	240982144	T	-	DEL	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	frame_shift_del	c.256	p.S86fs	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	12	0	0	14	11	12.79	-	-	-	-	240982144	T	-	240982144	7	5	357	1	0	1	0	1	0	0	0	0	12673	1580	55	0	916	0	PRR21	2	240982144	Frame_Shift_Del	DEL	T	TCGA-AQ-A04L-01B-21D-A10M-09		240982144	2217229	3	38451										
SCN5A	0	genome.wustl.edu	37	chr3	38601670	38601670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ggccaggtacccggcccccaCgttgtcaaagttgactttca	10	14	2	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	3	38601670	38601670	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.4213	p.V1405M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	29	0	0	92	37	28.68	-	-	-	T	38601670	C	T	38601670	3	4	357	1	0	0	0	0	1	0	0	0	14010	536	19	1	1861	1	SCN5A	3	38601670	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		38601670	159420760	4	38452										
CACNA2D2	0	genome.wustl.edu	37	chr3	50404289	50404289	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ggctggtcttggtgggtacgGttgctggctagcaccttgaa	16	8	1	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	3	50404289	50404289	G	C	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.2583	p.N861K	1.000	NULL	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	42	0	0	89	106	53.81	-	-	-	C	50404289	G	C	50404289	3	2	357	1	0	0	0	0	1	0	0	0	2574	1252	44	4	915	4	CACNA2D2	3	50404289	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	11802619	50404289	147618141	5	38453										
DSPP	0	genome.wustl.edu	37	chr4	88534388	88534389	+	Frame_Shift_Ins	INS	-	-	AG													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	cccagaagctcaaccatagaINSgaaagcaaacgcgtagaaaa							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	4	88534388	88534389	-	AG	INS	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	frame_shift_ins	c.1050_1051	p.E350fs	0.007:0.012	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	53	0	0	13	2	13.33	-	-	-	AG	88534389	-	AG	88534388	7	5	357	1	0	1	1	0	0	0	0	0	4817	301	11	0	1060	0	DSPP	4	88534388	Frame_Shift_Ins	INS	-	TCGA-AQ-A04L-01B-21D-A10M-09		88534388	102619888	6	38454										
FGA	0	genome.wustl.edu	37	chr4	155507981	155507981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	acctgttcaagttgcttctgCtgatcttcatagtccttcag	7	11	5	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	4	155507981	155507981	C	G	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.600	p.Q200H	0.697	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	68	0	0	123	18	12.77	-	-	-	G	155507981	C	G	155507981	3	3	357	1	0	0	0	0	1	0	0	0	5876	796	28	4	2052	4	FGA	4	155507981	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	66973593	155507981	35646295	7	38455										
GABRA6	0	genome.wustl.edu	37	chr5	161128618	161128618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	cgcccatcttacaatcaacaCctgtcacacccccaccactc	2	21	3	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	5	161128618	161128618	C	A	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	missense	c.1201	p.P401T	0.042	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	114	0	0	60	33	35.48	-	-	-	A	161128618	C	A	161128618	3	1	357	1	0	0	0	0	1	0	0	0	6214	507	18	4	1235	4	GABRA6	5	161128618	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		161128618	19786642	8	38456										
OLIG3	0	genome.wustl.edu	37	chr6	137815024	137815024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ctaggttcaggtcgtgcatcCgcttgcgttcgcgtccgttg	13	12	1	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	6	137815024	137815024	C	T	SNP	OLIG3	ENST00000367734	human	ensembl	69_37n	-1	known	missense	c.284	p.R95Q	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	OLIG3	HGNC	ENSG00000177468	26	0	0	178	45	20.18	-	-	-	T	137815024	C	T	137815024	3	4	357	1	0	0	0	0	1	0	0	0	10935	652	23	1	538	1	OLIG3	6	137815024	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		137815024	33300043	9	38457										
NT5C3	0	genome.wustl.edu	37	chr7	33075569	33075569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tttcacatgtacggcagactCttgattagtcatttcttggt	8	8	4	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	33075569	33075569	C	G	SNP	NT5C3	ENST00000396152	human	ensembl	69_37n	-1	known	missense	c.13	p.E5Q	1.000	NULL	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3	HGNC	ENSG00000122643	73	0	0	1124	217	16.17	-	-	-	G	33075569	C	G	33075569	3	3	357	1	0	0	0	0	1	0	0	0	10761	922	32	2	916	2	NT5C3	7	33075569	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		33075569	126063094	10	38458										
ZNF479	0	genome.wustl.edu	37	chr7	57194380	57194380	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	acaatccaggcattgccattCctccagagagaattctatag	7	11	1	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	57194380	57194380	C	A	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	nonsense	c.85	p.E29*	0.420	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	216	0	0	145	50	25.25	-	-	-	A	57194380	C	A	57194380	4	1	357	1	0	0	0	0	0	1	0	0	18029	864	30	2	1501	2	ZNF479	7	57194380	Nonsense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	24118811	57194380	101944283	11	38459										
CDHR3	0	genome.wustl.edu	37	chr7	105624689	105624689	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ccctggattcatttaccaggTtgaggccttcgatccagaag	10	11	1	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	105624689	105624689	T	A	SNP	CDHR3	ENST00000317716	human	ensembl	69_37n	1	known	missense	c.467	p.V156D	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536	51	0	0	55	12	17.91	-	-	-	A	105624689	T	A	105624689	3	1	357	1	0	0	0	0	1	0	0	0	3149	1725	60	5	481	5	CDHR3	7	105624689	Missense_Mutation	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09	48430309	105624689	53513974	12	38460										
FLNC	0	genome.wustl.edu	37	chr7	128475401	128475401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	cagcaaggccatcgtggatgGgaacctgaagctgatcctgg	14	10	0	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	128475401	128475401	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.374	p.G125E	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	64	0	0	60	90	60	-	-	-	A	128475401	G	A	128475401	3	1	357	1	0	0	0	0	1	0	0	0	5981	1232	43	4	380	4	FLNC	7	128475401	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	22850712	128475401	30663262	13	38461										
SSPO	0	genome.wustl.edu	37	chr7	149500315	149500315	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tggtgcccatcccccaccagActgcgagctgggccgtgtgt	13	15	0	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	149500315	149500315	A	C	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	22	0	0	78	17	17.89	-	-	-	C	149500315	A	C	149500315	1	2	357	0	1	0	0	0	0	0	0	0	15280	289	10	5		5	SSPO	7	149500315	RNA	SNP	A	TCGA-AQ-A04L-01B-21D-A10M-09	21024914	149500315	9638348	14	38462										
SPAG11B	0	genome.wustl.edu	37	chr8	7320265	7320265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gcgcggtggtaagaggtcccGtttcactgcgtggcgtagca	16	10	1	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	8	7320265	7320265	G	A	SNP	SPAG11B	ENST00000398462	human	ensembl	69_37n	-1	known	missense	c.178	p.R60W	0.000	pfam_Sperm_Ag_HE2	pfam_Sperm_Ag_HE2,pfam_Defensin_beta-typ	-	no_errors	SPAG11B	HGNC	ENSG00000164871	17	0	0	42	12	22.22	-	-	-	A	7320265	G	A	7320265	3	1	357	1	0	0	0	0	1	0	0	0	15068	1144	40	1	541	1	SPAG11B	8	7320265	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09		7320265	139043757	15	38463										
UBR5	0	genome.wustl.edu	37	chr8	103271312	103271312	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	atcttctgccgttaaatcttCtaatgaattttttggaagca	6	7	4	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	8	103271312	103271312	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	nonsense	c.8002	p.E2668*	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	96	0	0	218	34	13.49	-	-	-	A	103271312	C	A	103271312	4	1	357	1	0	0	0	0	0	1	0	0	17002	922	32	2	409	2	UBR5	8	103271312	Nonsense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	95951047	103271312	43092710	16	38464										
ALDH1A1	0	genome.wustl.edu	37	chr9	75516163	75516163	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	attttcactgtgactgttttGacctctgtatattcatggaa	7	7	3	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	9	75516163	75516163	G	C	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	silent	c.1467	p.V489	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	88	0	0	51	14	21.21	-	-	-	C	75516163	G	C	75516163	2	2	357	1	0	0	0	0	0	0	0	1	490	1277	45	2		2	ALDH1A1	9	75516163	Silent	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09		75516163	65697268	17	38465										
KCNMA1	0	genome.wustl.edu	37	chr10	78787645	78787645	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gagcttgagcttcacaaaacAcagcctgcaatgagatggag	11	9	1	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	78787645	78787645	A	G	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.1864	p.C622R	1.000	pfam_K_chnl_Ca-activ_BK_asu,prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	32	0	0	60	20	24.69	-	-	-	G	78787645	A	G	78787645	3	3	357	1	0	0	0	0	1	0	0	0	8127	159	6	5	2070	5	KCNMA1	10	78787645	Missense_Mutation	SNP	A	TCGA-AQ-A04L-01B-21D-A10M-09		78787645	56747102	18	38466										
SFTPA1	0	genome.wustl.edu	37	chr10	81372138	81372138	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ctgcctggagcccctggtatCcctggagagtgtggagagaa	15	10	0	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	81372138	81372138	C	T	SNP	SFTPA1	ENST00000419470	human	ensembl	69_37n	1	known	silent	c.288	p.I96	0.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPA1	HGNC	ENSG00000122852	57	0	0	727	229	23.9	-	-	-	T	81372138	C	T	81372138	2	4	357	1	0	0	0	0	0	0	0	1	14277	845	30	2		2	SFTPA1	10	81372138	Silent	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	2584493	81372138	54162609	19	38467										
RNLS	0	genome.wustl.edu	37	chr10	90122432	90122432	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	aaagaggcccagagcatatcGagaggagtagctcacagcct	12	10	1	3			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	90122432	90122432	G	A	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	nonsense	c.577	p.R193*	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	42	0	0	41	12	22.64	-	-	-	A	90122432	G	A	90122432	4	1	357	1	0	0	0	0	0	1	0	0	13591	1066	37	1	539	1	RNLS	10	90122432	Nonsense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	8750294	90122432	45412315	20	38468										
QSER1	0	genome.wustl.edu	37	chr11	32996910	32996911	+	Frame_Shift_Ins	INS	-	-	A													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	taatttcttctcatttacttINSaaaaaaaatgtttttcagaa							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	11	32996910	32996911	-	A	INS	QSER1	ENST00000524678	human	ensembl	69_37n	1	putative	frame_shift_ins	c.2150_2151	p.M720fs	0.003:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QSER1	HGNC	ENSG00000060749	45	0	0	117	15	11.36	-	-	-	A	32996911	-	A	32996910	7	5	357	1	0	1	1	0	0	0	0	0	12965	1769	61	0		0	QSER1	11	32996910	Frame_Shift_Ins	INS	-	TCGA-AQ-A04L-01B-21D-A10M-09		32996910	102009606	21	38469										
CRY2	0	genome.wustl.edu	37	chr11	45889269	45889269	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tggttgtctctcctgccgccTcttctactaccgcctgtggg	10	15	3	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	11	45889269	45889269	T	C	SNP	CRY2	ENST00000443527	human	ensembl	69_37n	1	known	missense	c.911	p.L304P	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	73	0	0	220	37	14.4	-	-	-	C	45889269	T	C	45889269	3	2	357	1	0	0	0	0	1	0	0	0	3934	1551	54	5	969	5	CRY2	11	45889269	Missense_Mutation	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09	12892359	45889269	89117247	22	38470										
CEP57	0	genome.wustl.edu	37	chr11	95562350	95562351	+	Frame_Shift_Ins	INS	-	-	C													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tacttctgctttgtatatagINStgatcaccagcagcttgcaa							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	11	95562350	95562351	-	C	INS	CEP57	ENST00000325542	human	ensembl	69_37n	1	known	frame_shift_ins	c.1129_1128	p.D378fs	1.000:1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	70	0	0	69	10	12.66	-	-	-	C	95562351	-	C	95562350	7	5	357	1	0	1	1	0	0	0	0	0	3285	1043	36	0	1165	0	CEP57	11	95562350	Frame_Shift_Ins	INS	-	TCGA-AQ-A04L-01B-21D-A10M-09	49673081	95562350	39444166	23	38471										
KCNA6	0	genome.wustl.edu	37	chr12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ctgggccggccaggggcatcGccatcgtctccgtgttggtc	15	14	1	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	4919736	4919736	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	missense	c.529	p.A177T	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	47	0	0	103	74	40.88	-	-	-	A	4919736	G	A	4919736	3	1	357	1	0	0	0	0	1	0	0	0	8061	1087	38	1	531	1	KCNA6	12	4919736	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09		4919736	128932159	24	38472										
DNAH10	0	genome.wustl.edu	37	chr12	124265682	124265682	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gacgagtacaaccgtgggagTcacatctggagaagtctcta	12	9	3	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	124265682	124265682	T	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.494	p.V165D	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	31	0	0	78	26	25	-	-	-	A	124265682	T	A	124265682	3	1	357	1	0	0	0	0	1	0	0	0	4634	1667	58	5	516	5	DNAH10	12	124265682	Missense_Mutation	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09	119345946	124265682	9586213	25	38473										
RBM23	0	genome.wustl.edu	37	chr14	23374208	23374208	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tgttggccatggctgccagtCggtttttctctgcctgggga	14	10	1	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	23374208	23374208	C	A	SNP	RBM23	ENST00000359890	human	ensembl	69_37n	-1	known	missense	c.740	p.R247L	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM23	HGNC	ENSG00000100461	51	0	0	95	53	35.81	-	-	-	A	23374208	C	A	23374208	3	1	357	1	0	0	0	0	1	0	0	0	13206	884	31	3	603	3	RBM23	14	23374208	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		23374208	83975332	26	38474										
TGM1	0	genome.wustl.edu	37	chr14	24731437	24731437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	agcagcgagcccagaaggaaCggcctcctcctctgcgagag	13	14	1	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	24731437	24731437	C	T	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.122	p.R41H	0.100	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	14	0	0	29	8	21.05	-	-	-	T	24731437	C	T	24731437	3	4	357	1	0	0	0	0	1	0	0	0	15924	536	19	1	2387	1	TGM1	14	24731437	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	1357229	24731437	82618103	27	38475										
SIX1	0	genome.wustl.edu	37	chr14	61113136	61113136	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gaatagtttgagctcctggcGtggcccatattgccctgcag	12	11	0	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	61113136	61113136	G	A	SNP	SIX1	ENST00000247182	human	ensembl	69_37n	-1	known	silent	c.720	p.H240	0.977	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX1	HGNC	ENSG00000126778	80	0	0	273	96	25.95	-	-	-	A	61113136	G	A	61113136	2	1	357	1	0	0	0	0	0	0	0	1	14435	1136	40	1		1	SIX1	14	61113136	Silent	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	36381699	61113136	46236404	28	38476										
THSD4	0	genome.wustl.edu	37	chr15	71704117	71704117	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	aaagtcatcgatggcaccccCtgtgaccagaacggcacggc	11	14	1	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	15	71704117	71704117	C	T	SNP	THSD4	ENST00000261862	human	ensembl	69_37n	1	known	silent	c.1107	p.P369	0.996	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720	26	0	0	29	12	29.27	-	-	-	T	71704117	C	T	71704117	2	4	357	1	0	0	0	0	0	0	0	1	15973	668	24	4		4	THSD4	15	71704117	Silent	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		71704117	30827275	29	38477										
IL16	0	genome.wustl.edu	37	chr15	81598849	81598849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ggagggaagggctccctacaCggagacaagcctctcaccat	12	13	1	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	15	81598849	81598849	C	T	SNP	IL16	ENST00000558332	human	ensembl	69_37n	1	putative	missense	c.1676	p.T559M	0.120	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,prints_Interleukin-16,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IL16	HGNC	ENSG00000172349	38	0	0	75	25	25	-	-	-	T	81598849	C	T	81598849	3	4	357	1	0	0	0	0	1	0	0	0	7687	535	19	1	3834	1	IL16	15	81598849	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	9894732	81598849	20932543	30	38478										
ZNF720	0	genome.wustl.edu	37	chr16	31734054	31734054	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gatgtgatgttagagaactaCggaaacctggtctctctggg	13	7	2	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	16	31734054	31734054	C	A	SNP	ZNF720	ENST00000316491	human	ensembl	69_37n	1	known	nonsense	c.111	p.Y37*	0.945	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF720	HGNC	ENSG00000197302	193	0	0	373	78	17.26	-	-	-	A	31734054	C	A	31734054	4	1	357	1	0	0	0	0	0	1	0	0	18217	547	19	3	117	3	ZNF720	16	31734054	Nonsense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09		31734054	58620699	31	38479										
PDPR	0	genome.wustl.edu	37	chr16	70154554	70154554	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	atctgtggaggtggaatcacGggcacttctgtggcctatca	13	9	4	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	16	70154554	70154554	G	A	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	silent	c.159	p.T53	1.000	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	29	0	0	95	12	11.21	-	-	-	A	70154554	G	A	70154554	2	1	357	1	0	0	0	0	0	0	0	1	11762	1103	39	1		1	PDPR	16	70154554	Silent	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	38420500	70154554	20200199	32	38480										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	74	0	0	94	300	76.14	-	-	-	C	7578271	T	C	7578271	3	2	357	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09		7578271	73616939	33	38481										
TMIGD2	0	genome.wustl.edu	37	chr19	4298146	4298146	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gagagccgtccctggggcccGcagacccccaggctgaggct	15	16	0	3			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	4298146	4298146	G	A	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	silent	c.243	p.C81	0.198	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	22	0	0	91	17	15.6	-	-	-	A	4298146	G	A	4298146	2	1	357	1	0	0	0	0	0	0	0	1	16326	1079	38	1		1	TMIGD2	19	4298146	Silent	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09		4298146	54830837	34	38482										
PLIN5	0	genome.wustl.edu	37	chr19	4529859	4529859	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ttgtccaggcccctgcaggcGaggctgttcatagtggccac	13	13	1	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	4529859	4529859	G	A	SNP	PLIN5	ENST00000381848	human	ensembl	69_37n	-1	known	silent	c.276	p.L92	0.001	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN5	HGNC	ENSG00000214456	74	0	0	260	45	14.75	-	-	-	A	4529859	G	A	4529859	2	1	357	1	0	0	0	0	0	0	0	1	12167	1045	37	1		1	PLIN5	19	4529859	Silent	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	231713	4529859	54599124	35	38483										
CALR	0	genome.wustl.edu	37	chr19	13054630	13054630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ggaggaggcagaggacaaggAggatgatgaggacaaagatg	19	3	0	4			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	13054630	13054630	A	G	SNP	CALR	ENST00000316448	human	ensembl	69_37n	1	known	missense	c.1157	p.E386G	0.997	pirsf_Calreticulin	pirsf_Calreticulin,pfam_Calret/calnex,superfamily_ConA-like_lec_gl,prints_Calret/calnex	-	no_errors	CALR	HGNC	ENSG00000179218	508	0	0	1032	272	20.81	-	-	-	G	13054630	A	G	13054630	3	3	357	1	0	0	0	0	1	0	0	0	2617	304	11	5	1191	5	CALR	19	13054630	Missense_Mutation	SNP	A	TCGA-AQ-A04L-01B-21D-A10M-09	8524771	13054630	46074353	36	38484										
CD97	0	genome.wustl.edu	37	chr19	14507218	14507218	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ggcacctgcgtcaacaccctTggcagctatacctgccagtg	10	15	1	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	14507218	14507218	T	C	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	silent	c.411	p.L137	0.000	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	34	0	0	300	40	11.56	-	-	-	C	14507218	T	C	14507218	2	2	357	1	0	0	0	0	0	0	0	1	3078	1799	63	5		5	CD97	19	14507218	Silent	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09	1452588	14507218	44621765	37	38485										
PSMD8	0	genome.wustl.edu	37	chr19	38872860	38872860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	ccaaaaagatgacagactacGccaagaaggtggctggggta	13	8	0	4			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	38872860	38872860	G	A	SNP	PSMD8	ENST00000215071	human	ensembl	69_37n	1	known	missense	c.907	p.A303T	1.000	pfam_COP9_signalosome_subunit_CSN8	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	PSMD8	HGNC	ENSG00000099341	50	0	0	74	438	84.39	-	-	-	A	38872860	G	A	38872860	3	1	357	1	0	0	0	0	1	0	0	0	12784	1087	38	1	929	1	PSMD8	19	38872860	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	24365642	38872860	20256123	38	38486										
CYP2A13	0	genome.wustl.edu	37	chr19	41596335	41596335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	atatcgatcccaccttcttcCtgagccgcacagtctccaat	5	16	2	1			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	41596335	41596335	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	silent	c.520	p.L174	0.641	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	179	0	0	304	157	33.84	-	-	-	T	41596335	C	T	41596335	2	4	357	1	0	0	0	0	0	0	0	1	4192	680	24	4		4	CYP2A13	19	41596335	Silent	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	2723475	41596335	17532648	39	38487										
MEIS3	0	genome.wustl.edu	37	chr19	47920062	47920062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	gtgggtgggaggtgcccaccTgcttggcaaaggcagcgatg	18	9	0	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	47920062	47920062	T	C	SNP	MEIS3	ENST00000559524	human	ensembl	69_37n	-1	known	missense	c.344	p.Q115R	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS3	HGNC	ENSG00000105419	71	0	0	68	9	11.69	-	-	-	C	47920062	T	C	47920062	3	2	357	1	0	0	0	0	1	0	0	0	9540	1594	55	5	961	5	MEIS3	19	47920062	Missense_Mutation	SNP	T	TCGA-AQ-A04L-01B-21D-A10M-09	6323727	47920062	11208921	40	38488										
TLR8	0	genome.wustl.edu	37	chrX	12938876	12938876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	actatttcagaatagcaggcGtaacacatcatctagaattt	6	8	3	2			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	12938876	12938876	G	A	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.1717	p.V573I	0.176	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	29	0	0	22	7	24.14	-	-	-	A	12938876	G	A	12938876	3	1	357	1	0	0	0	0	1	0	0	0	16052	1145	40	1	1723	1	TLR8	23	12938876	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09		12938876	142331684	41	38489										
GAGE10	0	genome.wustl.edu	37	chrX	49173740	49173740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	aggagatgggcctgccaaatCcagaggaggtgaaaaggcct	15	8	0	3			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	49173740	49173740	C	G	SNP	GAGE10	ENST00000407599	human	ensembl	69_37n	1	known	missense	c.301	p.P101A	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE10	HGNC	ENSG00000215274	247	0	0	450	122	21.22	-	-	-	G	49173740	C	G	49173740	3	3	357	1	0	0	0	0	1	0	0	0	6236	855	30	2	311	2	GAGE10	23	49173740	Missense_Mutation	SNP	C	TCGA-AQ-A04L-01B-21D-A10M-09	36234864	49173740	106096820	42	38490										
PHF8	0	genome.wustl.edu	37	chrX	54029058	54029059	+	Frame_Shift_Del	DEL	AA	AA	-													0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tctcgatgttaaggctgtgtAagaagttccctccaaaggca							TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	54029058	54029059	AA	-	DEL	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	frame_shift_del	c.1112_1111	p.L371fs	1.000:1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	74	0	0	97	21	17.5	-	-	-	-	54029059	AA	-	54029058	7	5	357	1	0	1	0	1	0	0	0	0	11914	372	13	0	2296	0	PHF8	23	54029058	Frame_Shift_Del	DEL	AA	TCGA-AQ-A04L-01B-21D-A10M-09	4855318	54029058	101241502	43	38491										
NHSL2	0	genome.wustl.edu	37	chrX	71359877	71359877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0681818181818182	3	0.878020390389329	1.03270841643398	3.16697247706422	0.439857288481142	1	1	0	tgcctatggttactcagtccGacctacgttctgttcgcctg	9	13	2	0			TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	71359877	71359877	G	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.2479	p.D827Y	1.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	121	0	0	162	37	18.5	-	-	-	T	71359877	G	T	71359877	3	4	357	1	0	0	0	0	1	0	0	0	10484	1058	37	3	2501	3	NHSL2	23	71359877	Missense_Mutation	SNP	G	TCGA-AQ-A04L-01B-21D-A10M-09	17330819	71359877	83910683	44	38492										
CROCC	0	genome.wustl.edu	37	chr1	17266536	17266536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gcgccatgcaggcccacgagGacgcccagcgcgaggtgcag	16	15	0	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	17266536	17266536	G	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.1756	p.D586H	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	10	0	0	9	5	35.71	-	-	-	C	17266536	G	C	17266536	3	2	358	1	0	0	0	0	1	0	0	0	3923	1174	41	2	1806	2	CROCC	1	17266536	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		17266536	231984085	1	38493										
ZNF642	0	genome.wustl.edu	37	chr1	40961166	40961166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tgggaaagccttcagacatcGctcatcacttaatcagcatc	7	12	4	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	40961166	40961166	G	A	SNP	ZNF642	ENST00000372705	human	ensembl	69_37n	1	known	missense	c.1016	p.R339H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF642	HGNC	ENSG00000187815	27	0	0	19	14	42.42	-	-	-	A	40961166	G	A	40961166	3	1	358	1	0	0	0	0	1	0	0	0	18154	1087	38	1	1034	1	ZNF642	1	40961166	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	23694630	40961166	208289455	2	38494										
ZCCHC11	0	genome.wustl.edu	37	chr1	52891167	52891167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gaattggaggagtcagtcctCgaaagcctggctctgcattt	12	9	2	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	52891167	52891167	C	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	missense	c.4724	p.R1575Q	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	24	0	0	14	21	60	-	-	-	T	52891167	C	T	52891167	3	4	358	1	0	0	0	0	1	0	0	0	17676	884	31	1	221	1	ZCCHC11	1	52891167	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	11930001	52891167	196359454	3	38495										
LRP8	0	genome.wustl.edu	37	chr1	53729901	53729901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ggttacggctgaagagagtgCgtcggcggccaccatcaact	14	11	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	53729901	53729901	C	T	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.1595	p.R532H	0.058	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	26	0	0	28	21	42.86	-	-	-	T	53729901	C	T	53729901	3	4	358	1	0	0	0	0	1	0	0	0	9029	768	27	1	1336	1	LRP8	1	53729901	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	838734	53729901	195520720	4	38496										
GBP5	0	genome.wustl.edu	37	chr1	89729432	89729432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gggatacctgtattcctttcCgaggctcccgatagtacttt	9	11	0	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	89729432	89729432	C	T	SNP	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	missense	c.1349	p.R450Q	0.942	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	74	0	0	53	8	13.11	-	-	-	T	89729432	C	T	89729432	3	4	358	1	0	0	0	0	1	0	0	0	6327	652	23	1	427	1	GBP5	1	89729432	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	35999531	89729432	159521189	5	38497										
AGL	0	genome.wustl.edu	37	chr1	100350009	100350009	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gaagtgttattatattcaggTatgttaattgagctcaaact	8	4	2	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	100350009	100350009	T	C	SNP	AGL	ENST00000294724	human	ensembl	69_37n	1	known	splice_site	c.2546+2	e18+2	1.000	-	-	-	no_errors	AGL	HGNC	ENSG00000162688	32	0	0	15	10	40	-	-	-	C	100350009	T	C	100350009	5	2	358	1	0	0	0	0	0	0	1	0	384	1652	57	5	2687	5	AGL	1	100350009	Splice_Site	SNP	T	TCGA-AQ-A0Y5-01A-11D-A14K-09	10620577	100350009	148900612	6	38498										
ZNF281	0	genome.wustl.edu	37	chr1	200377724	200377724	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ctagtggctcctttaactatGacttcaccacatgtgcgcct	7	13	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	200377724	200377724	G	C	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	silent	c.1110	p.V370	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	52	0	0	50	9	15.25	-	-	-	C	200377724	G	C	200377724	2	2	358	1	0	0	0	0	0	0	0	1	17914	1277	45	2		2	ZNF281	1	200377724	Silent	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	100027715	200377724	48872897	7	38499										
CACNA1S	0	genome.wustl.edu	37	chr1	201038705	201038705	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gtaaaccaggtggcattgacGatgcggtgacacaggacacg	14	9	0	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	201038705	201038705	G	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.2385	p.I795	0.951	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	22	0	0	40	15	27.27	-	-	-	T	201038705	G	T	201038705	2	4	358	1	0	0	0	0	0	0	0	1	2572	1048	37	3		3	CACNA1S	1	201038705	Silent	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	660981	201038705	48211916	8	38500										
CNST	0	genome.wustl.edu	37	chr1	246805311	246805311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ctagtgtctgaagatccaaaGgaaggaggagctaccaccaa	11	9	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	246805311	246805311	G	C	SNP	CNST	ENST00000366513	human	ensembl	69_37n	1	known	missense	c.909	p.K303N	0.918	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	39	0	0	34	11	24.44	-	-	-	C	246805311	G	C	246805311	3	2	358	1	0	0	0	0	1	0	0	0	3664	991	35	4	935	4	CNST	1	246805311	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	45766606	246805311	2445310	9	38501										
OR2L13	0	genome.wustl.edu	37	chr1	248262902	248262902	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gacctgatgtacatctccacCaccgtccccaagatggcgta	8	15	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	248262902	248262902	C	A	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	silent	c.225	p.T75	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	74	0	0	64	35	35.35	-	-	-	A	248262902	C	A	248262902	2	1	358	1	0	0	0	0	0	0	0	1	11079	581	21	4		4	OR2L13	1	248262902	Silent	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	1457591	248262902	987719	10	38502										
THSD7B	0	genome.wustl.edu	37	chr2	138373750	138373750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ctctgattttaatagtcatgCgatccccacacaatgcagag	7	11	2	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	2	138373750	138373750	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	silent	c.3438	p.C1146	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	20	0	0	23	9	28.12	-	-	-	T	138373750	C	T	138373750	2	4	358	1	0	0	0	0	0	0	0	1	15975	776	27	1		1	THSD7B	2	138373750	Silent	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		138373750	104825623	11	38503										
DNAH1	0	genome.wustl.edu	37	chr3	52365312	52365312	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	aggcccatcctgaatgcaggGgtcaccactgaaggtatgag	13	10	1	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	52365312	52365312	G	T	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.1020	p.G340	0.027	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	21	0	0	14	9	39.13	-	-	-	T	52365312	G	T	52365312	2	4	358	1	0	0	0	0	0	0	0	1	4633	1219	43	4		4	DNAH1	3	52365312	Silent	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		52365312	145657118	12	38504										
CACNA1D	0	genome.wustl.edu	37	chr3	53810978	53810978	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tatgtccacacagggtagcgTgcaaggtgagtgtcctgtgt	14	8	0	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	53810978	53810978	T	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.4642	p.C1548S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	34	0	0	48	12	20	-	-	-	A	53810978	T	A	53810978	3	1	358	1	0	0	0	0	1	0	0	0	2566	1696	59	5	4900	5	CACNA1D	3	53810978	Missense_Mutation	SNP	T	TCGA-AQ-A0Y5-01A-11D-A14K-09	1445666	53810978	144211452	13	38505										
OR5K2	0	genome.wustl.edu	37	chr3	98217306	98217306	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tatttttttcctatacattaGaccaaatttgcttgaagaag	5	6	0	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	98217306	98217306	G	A	SNP	OR5K2	ENST00000427338	human	ensembl	69_37n	1	known	missense	c.782	p.R261K	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861	55	0	0	31	5	13.89	-	-	-	A	98217306	G	A	98217306	3	1	358	1	0	0	0	0	1	0	0	0	11240	942	33	2	784	2	OR5K2	3	98217306	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	44406328	98217306	99805124	14	38506										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	53	15	22.06	-	-	-	A	178928079	G	A	178928079	3	1	358	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	80710773	178928079	19094351	15	38507										
FAM190A	0	genome.wustl.edu	37	chr4	91549368	91549368	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	acgttattattaaagatgaaGagagttcttcaagaggtaat	9	3	2	4			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	4	91549368	91549368	G	C	SNP	FAM190A	ENST00000333691	human	ensembl	69_37n	1	known	missense	c.1917	p.K639N	1.000	NULL	NULL	-	no_errors	FAM190A	HGNC	ENSG00000184305	17	0	0	27	9	25	-	-	-	C	91549368	G	C	91549368	3	2	358	1	0	0	0	0	1	0	0	0	5563	933	33	2	1935	2	FAM190A	4	91549368	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		91549368	99604908	16	38508										
PCDHGB1	0	genome.wustl.edu	37	chr5	140730085	140730085	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gatttgttagtgaacggtagGatagatcgagagaagatttg	14	2	0	4			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	5	140730085	140730085	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.258	p.R86	0.989	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	49	0	0	38	19	33.33	-	-	-	A	140730085	G	A	140730085	2	1	358	1	0	0	0	0	0	0	0	1	11635	1165	41	2		2	PCDHGB1	5	140730085	Silent	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		140730085	40185175	17	38509										
TINAG	0	genome.wustl.edu	37	chr6	54214608	54214608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ggtctgatgggcgaggaaaaCggcatgccacgaagccatgt	15	9	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	54214608	54214608	C	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.994	p.R332W	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	29	0	0	26	10	26.32	-	-	-	T	54214608	C	T	54214608	3	4	358	1	0	0	0	0	1	0	0	0	16016	527	19	1	1020	1	TINAG	6	54214608	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		54214608	116900459	18	38510										
LAMA2	0	genome.wustl.edu	37	chr6	129823915	129823915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	atgacaccaaagttaaaaacCggtatgtatcatcctgagac	7	9	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	129823915	129823915	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.8356	p.R2786C	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	43	0	0	56	8	12.5	-	-	-	T	129823915	C	T	129823915	3	4	358	1	0	0	0	0	1	0	0	0	8660	666	23	1	8590	1	LAMA2	6	129823915	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	75609307	129823915	41291152	19	38511										
SLC22A1	0	genome.wustl.edu	37	chr6	160543262	160543262	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	aagtggactggaaccagagcGccctcagctgtgtagacccc	12	13	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	160543262	160543262	G	A	SNP	SLC22A1	ENST00000366963	human	ensembl	69_37n	1	known	missense	c.295	p.A99T	0.306	tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A1	HGNC	ENSG00000175003	17	0	0	22	10	31.25	-	-	-	A	160543262	G	A	160543262	3	1	358	1	0	0	0	0	1	0	0	0	14529	1087	38	1	297	1	SLC22A1	6	160543262	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	30719347	160543262	10571805	20	38512										
THSD7A	0	genome.wustl.edu	37	chr7	11630106	11630106	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ccttctttgttcttgtgggtActtaattgtgagaggaggtt	12	5	2	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	11630106	11630106	A	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.1434	p.S478R	0.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	37	0	0	29	8	21.62	-	-	-	T	11630106	A	T	11630106	3	4	358	1	0	0	0	0	1	0	0	0	15974	388	14	5	3635	5	THSD7A	7	11630106	Missense_Mutation	SNP	A	TCGA-AQ-A0Y5-01A-11D-A14K-09		11630106	147508557	21	38513										
TNS3	0	genome.wustl.edu	37	chr7	47408046	47408046	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	cccacctcccacgctgtctgGagacacagagccattggcct	9	17	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	47408046	47408046	G	C	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.2197	p.P733A	0.003	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	25	0	0	20	9	31.03	-	-	-	C	47408046	G	C	47408046	3	2	358	1	0	0	0	0	1	0	0	0	16439	1174	41	2	2200	2	TNS3	7	47408046	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	35777940	47408046	111730617	22	38514										
CUL1	0	genome.wustl.edu	37	chr7	148457520	148457520	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ctcaatttttggctgacacaGagagattttataccagagag	9	7	1	4			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	148457520	148457520	G	C	SNP	CUL1	ENST00000325222	human	ensembl	69_37n	1	known	missense	c.721	p.E241Q	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130	43	0	0	50	13	20.63	-	-	-	C	148457520	G	C	148457520	3	2	358	1	0	0	0	0	1	0	0	0	4085	943	33	2	743	2	CUL1	7	148457520	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	101049474	148457520	10681143	23	38515										
LOXL2	0	genome.wustl.edu	37	chr8	23217687	23217687	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	acaccgacatcctccgtgtgCttgcagtcagtgacgcccca	9	16	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	8	23217687	23217687	C	G	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	missense	c.447	p.K149N	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	14	0	0	14	8	36.36	-	-	-	G	23217687	C	G	23217687	3	3	358	1	0	0	0	0	1	0	0	0	8966	796	28	4	1925	4	LOXL2	8	23217687	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		23217687	123146335	24	38516										
TMEM71	0	genome.wustl.edu	37	chr8	133764157	133764157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tggtgaggagtctgggacttCggcgacaggtatagtgggag	19	5	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	8	133764157	133764157	C	T	SNP	TMEM71	ENST00000356838	human	ensembl	69_37n	-1	known	missense	c.188	p.R63Q	1.000	NULL	NULL	-	no_errors	TMEM71	HGNC	ENSG00000165071	39	0	0	59	16	21.33	-	-	-	T	133764157	C	T	133764157	3	4	358	1	0	0	0	0	1	0	0	0	16295	884	31	1	727	1	TMEM71	8	133764157	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	110546470	133764157	12599865	25	38517										
PPRC1	0	genome.wustl.edu	37	chr10	103899095	103899095	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tatcccggacttccccatgcAtttggcctgccctgaggagg	11	14	0	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	10	103899095	103899095	A	C	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.830	p.H277P	0.969	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	37	0	0	45	11	19.64	-	-	-	C	103899095	A	C	103899095	3	2	358	1	0	0	0	0	1	0	0	0	12487	217	8	5	848	5	PPRC1	10	103899095	Missense_Mutation	SNP	A	TCGA-AQ-A0Y5-01A-11D-A14K-09		103899095	31635652	26	38518										
PTDSS2	0	genome.wustl.edu	37	chr11	489687	489687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ggctcgtcttcttcgtgaacGtgggtggcgtggccatgcgt	16	10	2	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	489687	489687	G	A	SNP	PTDSS2	ENST00000308020	human	ensembl	69_37n	1	known	missense	c.1069	p.V357M	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915	24	0	0	29	17	36.96	-	-	-	A	489687	G	A	489687	3	1	358	1	0	0	0	0	1	0	0	0	12817	1145	40	1	1107	1	PTDSS2	11	489687	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		489687	134516829	27	38519										
UBQLN3	0	genome.wustl.edu	37	chr11	5529582	5529582	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gcaggaggaccttcccttgaTtgctactgactcctcgggga	12	12	0	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	5529582	5529582	T	G	SNP	UBQLN3	ENST00000311659	human	ensembl	69_37n	-1	known	missense	c.1207	p.I403L	0.606	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520	57	0	0	79	9	10.11	-	-	-	G	5529582	T	G	5529582	3	3	358	1	0	0	0	0	1	0	0	0	16995	1493	52	5	764	5	UBQLN3	11	5529582	Missense_Mutation	SNP	T	TCGA-AQ-A0Y5-01A-11D-A14K-09	5039895	5529582	129476934	28	38520										
OR5AK2	0	genome.wustl.edu	37	chr11	56756390	56756390	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ttctagacttttactagccaTgacactaggaaacagcactg	7	10	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	56756390	56756390	T	C	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.2	p.M1T	0.933	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	26	0	0	25	8	24.24	-	-	-	C	56756390	T	C	56756390	3	2	358	1	0	0	0	0	1	0	0	0	11215	1478	51	5	4	5	OR5AK2	11	56756390	Missense_Mutation	SNP	T	TCGA-AQ-A0Y5-01A-11D-A14K-09	51226808	56756390	78250126	29	38521										
SLC22A6	0	genome.wustl.edu	37	chr11	62751063	62751063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	agccatgcccgagaggagccGgaaggcgcagtagatgggga	18	9	0	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	62751063	62751063	G	A	SNP	SLC22A6	ENST00000377871	human	ensembl	69_37n	-1	known	missense	c.574	p.R192W	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901	34	0	0	35	26	42.62	-	-	-	A	62751063	G	A	62751063	3	1	358	1	0	0	0	0	1	0	0	0	14547	1115	39	1	1149	1	SLC22A6	11	62751063	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	5994673	62751063	72255453	30	38522										
DSCAML1	0	genome.wustl.edu	37	chr11	117306505	117306505	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ccttgagcagacttgatgggTggaatggtgcctgaatgagg	16	6	0	5			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	117306505	117306505	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.4911	p.P1637	0.750	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	32	0	0	35	26	42.62	-	-	-	C	117306505	T	C	117306505	2	2	358	1	0	0	0	0	0	0	0	1	4804	1683	59	5		5	DSCAML1	11	117306505	Silent	SNP	T	TCGA-AQ-A0Y5-01A-11D-A14K-09	54555442	117306505	17700011	31	38523										
CACNA1C	0	genome.wustl.edu	37	chr12	2602510	2602510	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ttcgccatgctcacggtgttCcagtgcatcaccatggaggg	12	12	2	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	12	2602510	2602510	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.1071	p.F357	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	42	0	0	37	17	31.48	-	-	-	T	2602510	C	T	2602510	2	4	358	1	0	0	0	0	0	0	0	1	2565	854	30	2		2	CACNA1C	12	2602510	Silent	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		2602510	131249385	32	38524										
EPS8	0	genome.wustl.edu	37	chr12	15777330	15777330	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	atcttgcacttcctccatctGagatttccttcctagacacc	4	15	2	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	12	15777330	15777330	G	A	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	nonsense	c.2056	p.Q686*	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	30	0	0	51	14	21.54	-	-	-	A	15777330	G	A	15777330	4	1	358	1	0	0	0	0	0	1	0	0	5231	1299	45	2	424	2	EPS8	12	15777330	Nonsense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	13174820	15777330	118074565	33	38525										
CKAP2	0	genome.wustl.edu	37	chr13	53049138	53049138	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	caagagaaaacttctaaattGccagatatgttaaaagatca	6	6	2	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	13	53049138	53049138	G	T	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	missense	c.1914	p.L638F	0.963	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	31	0	0	10	15	60	-	-	-	T	53049138	G	T	53049138	3	4	358	1	0	0	0	0	1	0	0	0	3472	1310	46	4	1948	4	CKAP2	13	53049138	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		53049138	62120740	34	38526										
MYH6	0	genome.wustl.edu	37	chr14	23863422	23863422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tggtggccatctccttctccGtctctgcgctcttcagcagc	9	16	5	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	14	23863422	23863422	G	A	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.2540	p.T847M	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	45	0	0	42	32	43.24	-	-	-	A	23863422	G	A	23863422	3	1	358	1	0	0	0	0	1	0	0	0	10110	1145	40	1	3355	1	MYH6	14	23863422	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		23863422	83486118	35	38527										
RYR3	0	genome.wustl.edu	37	chr15	33858967	33858967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ccaggctgctcggatcatccGgaacactacagccttattca	8	14	2	0			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	33858967	33858967	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.1235	p.R412Q	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	51	0	0	242	32	11.68	-	-	-	A	33858967	G	A	33858967	3	1	358	1	0	0	0	0	1	0	0	0	13856	1116	39	1	1281	1	RYR3	15	33858967	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		33858967	68672425	36	38528										
C15orf44	0	genome.wustl.edu	37	chr15	65884055	65884055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	cagcttgggagtagagcattCcatgccattcaggactagat	11	9	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	65884055	65884055	C	T	SNP	C15orf44	ENST00000567744	human	ensembl	69_37n	-1	known	missense	c.1109	p.G370E	1.000	NULL	NULL	-	no_errors	C15orf44	HGNC	ENSG00000138614	46	0	0	57	10	14.93	-	-	-	T	65884055	C	T	65884055	3	4	358	1	0	0	0	0	1	0	0	0	1810	855	30	2	571	2	C15orf44	15	65884055	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	32025088	65884055	36647337	37	38529										
RAB11A	0	genome.wustl.edu	37	chr15	66161954	66161954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gcgacgacgagtacgactacCtctttaaaggtgaggccatg	12	10	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	66161954	66161954	C	T	SNP	RAB11A	ENST00000261890	human	ensembl	69_37n	1	known	missense	c.31	p.L11F	1.000	smart_Small_GTPase_Ras,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11A	HGNC	ENSG00000103769	13	0	0	21	8	27.59	-	-	-	T	66161954	C	T	66161954	3	4	358	1	0	0	0	0	1	0	0	0	12974	681	24	4	33	4	RAB11A	15	66161954	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	277899	66161954	36369438	38	38530										
HMOX2	0	genome.wustl.edu	37	chr16	4558020	4558020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	gccaggtgctgaagaaggtgGcccagcgagcactgaaactc	14	11	0	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	16	4558020	4558020	G	A	SNP	HMOX2	ENST00000219700	human	ensembl	69_37n	1	known	missense	c.511	p.A171T	1.000	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX2	HGNC	ENSG00000103415	22	0	0	19	11	36.67	-	-	-	A	4558020	G	A	4558020	3	1	358	1	0	0	0	0	1	0	0	0	7295	1203	42	4	521	4	HMOX2	16	4558020	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		4558020	85796733	39	38531										
VWA3A	0	genome.wustl.edu	37	chr16	22122217	22122217	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tttgtccaacagagcctcatCgatgagcagctgagccacaa	9	12	1	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	16	22122217	22122217	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	silent	c.591	p.I197	0.692	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	57	0	0	91	18	16.51	-	-	-	T	22122217	C	T	22122217	2	4	358	1	0	0	0	0	0	0	0	1	17337	874	31	1		1	VWA3A	16	22122217	Silent	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	17564197	22122217	68232536	40	38532										
C17orf85	0	genome.wustl.edu	37	chr17	3725313	3725313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	catatttcatgtaatactgaCttcttctggctgctccaagt	6	10	3	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	17	3725313	3725313	C	G	SNP	C17orf85	ENST00000389005	human	ensembl	69_37n	-1	known	missense	c.830	p.S277T	1.000	NULL	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356	56	0	0	78	12	13.33	-	-	-	G	3725313	C	G	3725313	3	3	358	1	0	0	0	0	1	0	0	0	1904	565	20	4	1056	4	C17orf85	17	3725313	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		3725313	77469897	41	38533										
CDRT1	0	genome.wustl.edu	37	chr17	15522759	15522759	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	cacacttccggcatagagggAtggaatcggttcccttctca	10	12	1	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	17	15522759	15522759	A	T	SNP	CDRT1	ENST00000395906	human	ensembl	69_37n	-1	known	missense	c.68	p.I23N	0.464	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322	73	0	0	42	7	14.29	-	-	-	T	15522759	A	T	15522759	3	4	358	1	0	0	0	0	1	0	0	0	3203	333	12	5	2238	5	CDRT1	17	15522759	Missense_Mutation	SNP	A	TCGA-AQ-A0Y5-01A-11D-A14K-09	11797446	15522759	65672451	42	38534										
FKBP8	0	genome.wustl.edu	37	chr19	18650369	18650369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	cccagcccgcacctggatgaCgtcacagtcacccagagtga	10	16	2	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	19	18650369	18650369	C	T	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.541	p.V181I	0.986	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	8	0	0	16	7	30.43	-	-	-	T	18650369	C	T	18650369	3	4	358	1	0	0	0	0	1	0	0	0	5960	536	19	1	815	1	FKBP8	19	18650369	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09		18650369	40478614	43	38535										
RHPN2	0	genome.wustl.edu	37	chr19	33493752	33493752	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	tgagccaccttcaccagcatGaagaattcattccggatccc	7	14	2	3			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	19	33493752	33493752	G	A	SNP	RHPN2	ENST00000254260	human	ensembl	69_37n	-1	known	silent	c.915	p.F305	0.079	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941	24	0	0	44	9	16.98	-	-	-	A	33493752	G	A	33493752	2	1	358	1	0	0	0	0	0	0	0	1	13435	1281	45	2		2	RHPN2	19	33493752	Silent	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09	14843383	33493752	25635231	44	38536										
EPN1	0	genome.wustl.edu	37	chr19	56204118	56204118	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	ggccccggccttctcagatcCctggggagggtcacctgcca	13	16	2	1			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	19	56204118	56204118	C	G	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	missense	c.1391	p.P464R	0.998	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	13	0	0	15	4	21.05	-	-	-	G	56204118	C	G	56204118	3	3	358	1	0	0	0	0	1	0	0	0	5222	623	22	4	1500	4	EPN1	19	56204118	Missense_Mutation	SNP	C	TCGA-AQ-A0Y5-01A-11D-A14K-09	22710366	56204118	2924865	45	38537										
RALY	0	genome.wustl.edu	37	chr20	32661659	32661659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152173913043478	7	0.522571313720682	1.42941176470588	2.31428571428571	1.11085714285714	1	1	0	actatgattactaccgggacGacttctacgacaggtgagca	10	10	1	2			TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	20	32661659	32661659	G	A	SNP	RALY	ENST00000246194	human	ensembl	69_37n	1	known	missense	c.364	p.D122N	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	27	0	0	23	11	32.35	-	-	-	A	32661659	G	A	32661659	3	1	358	1	0	0	0	0	1	0	0	0	13102	1058	37	1	374	1	RALY	20	32661659	Missense_Mutation	SNP	G	TCGA-AQ-A0Y5-01A-11D-A14K-09		32661659	30363861	46	38538										
SPEN	0	genome.wustl.edu	37	chr1	16261272	16261273	+	Frame_Shift_Ins	INS	-	-	CT													0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gccagtgcaatggacattgaINSatttcagcagtcagtgtcca							TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	16261272	16261273	-	CT	INS	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_ins	c.8537_8538	p.E2846fs	1.000:0.920	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	44	0	0	7	23	76.67	-	-	-	CT	16261273	-	CT	16261272	7	5	359	1	0	1	1	0	0	0	0	0	15129	246	9	0	8579	0	SPEN	1	16261272	Frame_Shift_Ins	INS	-	TCGA-AQ-A1H2-01A-11D-A13L-09		16261272	232989349	1	38539										
CLSPN	0	genome.wustl.edu	37	chr1	36204752	36204752	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gatacctatgtttttccatcGaaacttcctcattcgcccag	5	13	1	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	36204752	36204752	G	A	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	nonsense	c.3415	p.R1139*	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	53	0	0	48	28	36.84	-	-	-	A	36204752	G	A	36204752	4	1	359	1	0	0	0	0	0	1	0	0	3590	1066	37	1	628	1	CLSPN	1	36204752	Nonsense_Mutation	SNP	G	TCGA-AQ-A1H2-01A-11D-A13L-09	19943480	36204752	213045869	2	38540										
COL9A2	0	genome.wustl.edu	37	chr1	40778134	40778134	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	ccctgaggacttacaggaggTccagcaaaaccagggccctg	12	13	0	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	40778134	40778134	T	A	SNP	COL9A2	ENST00000417105	human	ensembl	69_37n	-1	putative	missense	c.322	p.T108S	1.000	pfam_Collagen	pfam_Collagen	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL9A2	HGNC	ENSG00000049089	79	0	0	52	39	42.86	-	-	-	A	40778134	T	A	40778134	3	1	359	1	0	0	0	0	1	0	0	0	3738	1654	58	5	1816	5	COL9A2	1	40778134	Missense_Mutation	SNP	T	TCGA-AQ-A1H2-01A-11D-A13L-09	4573382	40778134	208472487	3	38541										
GPR113	0	genome.wustl.edu	37	chr2	26533779	26533779	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	atggctagtaccagcccattCacgcctatgatggccagcac	9	14	1	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	26533779	26533779	C	T	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	silent	c.2220	p.V740	0.457	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	26	0	0	13	18	58.06	-	-	-	T	26533779	C	T	26533779	2	4	359	1	0	0	0	0	0	0	0	1	6680	813	29	2		2	GPR113	2	26533779	Silent	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		26533779	216665594	4	38542										
AQP12A	0	genome.wustl.edu	37	chr2	241631413	241631413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	caggcgggcctccaaggcccTgctcccagtgggcgcctatg	14	16	0	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	241631413	241631413	T	G	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.83	p.L28R	0.987	pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	8	0	0	52	27	33.75	-	-	-	G	241631413	T	G	241631413	3	3	359	1	0	0	0	0	1	0	0	0	826	1580	55	5	85	5	AQP12A	2	241631413	Missense_Mutation	SNP	T	TCGA-AQ-A1H2-01A-11D-A13L-09	215097634	241631413	1567960	5	38543										
KIF9	0	genome.wustl.edu	37	chr3	47308543	47308543	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gatgtacttttcctctgataAggtccgggaatgggcctaca	11	9	1	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	47308543	47308543	A	C	SNP	KIF9	ENST00000265529	human	ensembl	69_37n	-1	known	missense	c.691	p.L231V	0.992	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727	96	0	0	45	33	42.31	-	-	-	C	47308543	A	C	47308543	3	2	359	1	0	0	0	0	1	0	0	0	8362	69	3	5	1741	5	KIF9	3	47308543	Missense_Mutation	SNP	A	TCGA-AQ-A1H2-01A-11D-A13L-09		47308543	150713887	6	38544										
ROBO1	0	genome.wustl.edu	37	chr3	78987810	78987810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	caaggtaattccttgctacaCagacatagactccttcatca	5	12	2	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	78987810	78987810	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.440	p.C147Y	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	79	0	0	51	37	42.05	-	-	-	T	78987810	C	T	78987810	3	4	359	1	0	0	0	0	1	0	0	0	13599	478	17	4	4640	4	ROBO1	3	78987810	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09	31679267	78987810	119034620	7	38545										
MYH15	0	genome.wustl.edu	37	chr3	108129757	108129757	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	catggcttcggctgcctcctGcaatctaattgccagttcct	8	14	1	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	108129757	108129757	G	A	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	nonsense	c.4228	p.Q1410*	1.000	pfam_Myosin_tail,superfamily_Lambda_DNA-bd_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	11	0	0	5	8	61.54	-	-	-	A	108129757	G	A	108129757	4	1	359	1	0	0	0	0	0	1	0	0	10106	1328	46	4	1656	4	MYH15	3	108129757	Nonsense_Mutation	SNP	G	TCGA-AQ-A1H2-01A-11D-A13L-09	29141947	108129757	89892673	8	38546										
DIRC2	0	genome.wustl.edu	37	chr3	122578962	122578964	+	In_Frame_Del	DEL	CTC	CTC	-													0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gtatgctgaaactaattcttCtcctcctgttttcgggagct							TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	122578962	122578964	CTC	-	DEL	DIRC2	ENST00000261038	human	ensembl	69_37n	1	known	in_frame_del	c.1051_1053	p.L353in_frame_del	1.000:1.000:1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463	101	0	0	71	42	37.17	-	-	-	-	122578964	CTC	-	122578962	7	5	359	1	0	1	0	1	0	0	0	0	4570	913	32	0	1077	0	DIRC2	3	122578962	In_Frame_Del	DEL	CTC	TCGA-AQ-A1H2-01A-11D-A13L-09	14449205	122578962	75443468	9	38547										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0	40	17	29.82	-	-	-	G	178952085	A	G	178952085	3	3	359	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AQ-A1H2-01A-11D-A13L-09	56373123	178952085	19070345	10	38548										
PHOX2B	0	genome.wustl.edu	37	chr4	41749389	41749389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gactcgcgcctctgtgaggtCgatcttcagggccagctcct	12	14	3	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	41749389	41749389	C	T	SNP	PHOX2B	ENST00000226382	human	ensembl	69_37n	-1	known	missense	c.406	p.D136N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132	11	0	0	10	13	56.52	-	-	-	T	41749389	C	T	41749389	3	4	359	1	0	0	0	0	1	0	0	0	11933	884	31	1	546	1	PHOX2B	4	41749389	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		41749389	149404887	11	38549										
PCDHGA2	0	genome.wustl.edu	37	chr5	140718824	140718824	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	ggatagaccgggaggagctcTgcgctcagagcgcaccctgt	15	12	2	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	140718824	140718824	T	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.286	p.C96S	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	47	0	0	26	19	42.22	-	-	-	A	140718824	T	A	140718824	3	1	359	1	0	0	0	0	1	0	0	0	11627	1580	55	5	288	5	PCDHGA2	5	140718824	Missense_Mutation	SNP	T	TCGA-AQ-A1H2-01A-11D-A13L-09		140718824	40196436	12	38550										
CPLX2	0	genome.wustl.edu	37	chr5	175307021	175307021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gtgctcaaatacctgcccggGccgctgcaggacatgttcaa	11	13	2	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	175307021	175307021	G	A	SNP	CPLX2	ENST00000359546	human	ensembl	69_37n	1	known	silent	c.378	p.G126	0.998	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX2	HGNC	ENSG00000145920	37	0	0	32	26	44.07	-	-	-	A	175307021	G	A	175307021	2	1	359	1	0	0	0	0	0	0	0	1	3835	1190	42	4		4	CPLX2	5	175307021	Silent	SNP	G	TCGA-AQ-A1H2-01A-11D-A13L-09	34588197	175307021	5608239	13	38551										
MDGA1	0	genome.wustl.edu	37	chr6	37619916	37619916	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	ctctaggctgctggtgactgCgggcagctcaggatcattgc	14	11	3	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	37619916	37619916	C	G	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.1183	p.A395P	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	43	0	0	13	11	45.83	-	-	-	G	37619916	C	G	37619916	3	3	359	1	0	0	0	0	1	0	0	0	9477	768	27	3	1728	3	MDGA1	6	37619916	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		37619916	133495151	14	38552										
LPA	0	genome.wustl.edu	37	chr6	160962167	160962167	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gcagtgagcagcagtcagcaCccactctggggatattaagg	13	10	2	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	160962167	160962167	C	G	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.5566	p.V1856L	1.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	62	0	0	54	36	40	-	-	-	G	160962167	C	G	160962167	3	3	359	1	0	0	0	0	1	0	0	0	8969	507	18	4	576	4	LPA	6	160962167	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09	123342251	160962167	10152900	15	38553										
MLL3	0	genome.wustl.edu	37	chr7	152009002	152009002	+	Frame_Shift_Del	DEL	G	G	-													0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gggtgcttacacttacacaaGatactatattctgctgagga							TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	7	152009002	152009002	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.620	p.S207fs	0.932	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	38	0	0	16	30	60	-	-	-	-	152009002	G	-	152009002	7	5	359	1	0	1	0	1	0	0	0	0	9693	942	33	0	14335	0	MLL3	7	152009002	Frame_Shift_Del	DEL	G	TCGA-AQ-A1H2-01A-11D-A13L-09		152009002	7129661	16	38554										
ENPP2	0	genome.wustl.edu	37	chr8	120598499	120598499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gttgttggcatagtgcaaacGtttgggaaggtgctgtttca	14	5	1	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	8	120598499	120598499	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1450	p.R484C	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	170	0	0	194	81	29.45	-	-	-	A	120598499	G	A	120598499	3	1	359	1	0	0	0	0	1	0	0	0	5167	1145	40	1	1420	1	ENPP2	8	120598499	Missense_Mutation	SNP	G	TCGA-AQ-A1H2-01A-11D-A13L-09		120598499	25765523	17	38555										
DCLRE1A	0	genome.wustl.edu	37	chr10	115607027	115607027	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	taatgatcagaatgaaaatgTgtgagaaaataggctgtgca	11	3	1	4			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	10	115607027	115607027	T	C	SNP	DCLRE1A	ENST00000361384	human	ensembl	69_37n	-1	known	silent	c.2193	p.T731	0.996	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	50	0	0	40	27	39.71	-	-	-	C	115607027	T	C	115607027	2	2	359	1	0	0	0	0	0	0	0	1	4325	1683	59	5		5	DCLRE1A	10	115607027	Silent	SNP	T	TCGA-AQ-A1H2-01A-11D-A13L-09		115607027	19927720	18	38556										
LPCAT4	0	genome.wustl.edu	37	chr15	34654803	34654803	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	accctctgaacattgttggcAtagagggtggggtccctgct	13	10	1	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	15	34654803	34654803	A	T	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	nonsense	c.855	p.Y285*	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	35	0	0	19	23	54.76	-	-	-	T	34654803	A	T	34654803	4	4	359	1	0	0	0	0	0	1	0	0	8979	224	8	5	743	5	LPCAT4	15	34654803	Nonsense_Mutation	SNP	A	TCGA-AQ-A1H2-01A-11D-A13L-09		34654803	67876589	19	38557										
PHLPP2	0	genome.wustl.edu	37	chr16	71683564	71683565	+	Frame_Shift_Ins	INS	-	-	G													0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	tgctagaggatggagtggctINSggcttaggggcatccttgat							TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	71683564	71683565	-	G	INS	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3201_3200	p.A1068fs	0.983:1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	36	0	0	14	3	17.65	-	-	-	G	71683565	-	G	71683564	7	5	359	1	0	1	1	0	0	0	0	0	11929	1567	55	0	774	0	PHLPP2	16	71683564	Frame_Shift_Ins	INS	-	TCGA-AQ-A1H2-01A-11D-A13L-09		71683564	18671189	20	38558										
MNT	0	genome.wustl.edu	37	chr17	2291304	2291304	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	cttctcacgtgccagccgctCcatttcatgctcatattcct	5	16	3	0			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	2291304	2291304	C	G	SNP	MNT	ENST00000174618	human	ensembl	69_37n	-1	known	missense	c.847	p.E283Q	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MNT	HGNC	ENSG00000070444	17	0	0	30	32	51.61	-	-	-	G	2291304	C	G	2291304	3	3	359	1	0	0	0	0	1	0	0	0	9750	864	30	2	909	2	MNT	17	2291304	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		2291304	78903906	21	38559										
TRAPPC1	0	genome.wustl.edu	37	chr17	7833976	7833976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	agcgaacataggagtccagtCgggagcgaaagagctcactt	13	9	1	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	7833976	7833976	C	T	SNP	TRAPPC1	ENST00000303731	human	ensembl	69_37n	-1	known	missense	c.386	p.R129Q	0.994	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043	40	0	0	16	15	48.39	-	-	-	T	7833976	C	T	7833976	3	4	359	1	0	0	0	0	1	0	0	0	16552	884	31	1	55	1	TRAPPC1	17	7833976	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09	5542672	7833976	73361234	22	38560										
MC2R	0	genome.wustl.edu	37	chr18	13884764	13884764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gaagagagacatgtagcaggCgcagtaggggttacttgggc	17	6	0	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	18	13884764	13884764	C	T	SNP	MC2R	ENST00000327606	human	ensembl	69_37n	-1	known	missense	c.754	p.A252T	0.121	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231	48	0	0	3	28	90.32	-	-	-	T	13884764	C	T	13884764	3	4	359	1	0	0	0	0	1	0	0	0	9435	768	27	1	143	1	MC2R	18	13884764	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		13884764	64192484	23	38561										
PRPF6	0	genome.wustl.edu	37	chr20	62657296	62657296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	tgtacttgcccttcaggccaAccccaacagtgaggagatct	9	13	2	2			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	20	62657296	62657296	A	G	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.1913	p.N638S	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	20	0	0	26	18	40.91	-	-	-	G	62657296	A	G	62657296	3	3	359	1	0	0	0	0	1	0	0	0	12655	43	2	5	1971	5	PRPF6	20	62657296	Missense_Mutation	SNP	A	TCGA-AQ-A1H2-01A-11D-A13L-09		62657296	368224	24	38562										
GRIK1	0	genome.wustl.edu	37	chr21	30909667	30909667	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	ttttttctgattcttcagtgAgattcccagttcttccatga	6	9	4	3			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	21	30909667	30909667	A	G	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2653	p.S885P	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	43	0	0	39	23	37.1	-	-	-	G	30909667	A	G	30909667	3	3	359	1	0	0	0	0	1	0	0	0	6824	304	11	5	119	5	GRIK1	21	30909667	Missense_Mutation	SNP	A	TCGA-AQ-A1H2-01A-11D-A13L-09		30909667	17220228	25	38563										
YY2	0	genome.wustl.edu	37	chrX	21874875	21874875	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	gaggaagtggtgggctattgCgactcagacaaccagctagg	15	8	1	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	21874875	21874875	C	T	SNP	YY2	ENST00000429584	human	ensembl	69_37n	1	known	silent	c.273	p.C91	0.010	pirsf_TF_Yin_yang	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY2	HGNC	ENSG00000230797	28	0	0	21	13	38.24	-	-	-	T	21874875	C	T	21874875	2	4	359	1	0	0	0	0	0	0	0	1	17606	776	27	1		1	YY2	23	21874875	Silent	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09		21874875	133395685	26	38564										
SPRY3	0	genome.wustl.edu	37	chrX	155004063	155004063	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	2	0.856159162047239	1.15898617511521	0	1.47507331378299	0.333333333333333	0.930327025915261	0	caaccagcgctgcctttgctCtgctgagagcctcctcgatt	9	15	1	1			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	155004063	155004063	C	T	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	missense	c.530	p.S177F	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	144	0	0	81	65	44.52	-	-	-	T	155004063	C	T	155004063	3	4	359	1	0	0	0	0	1	0	0	0	15198	913	32	2	532	2	SPRY3	23	155004063	Missense_Mutation	SNP	C	TCGA-AQ-A1H2-01A-11D-A13L-09	133129188	155004063	266497	27	38565										
KIAA2013	0	genome.wustl.edu	37	chr1	11982841	11982841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgctgggccatgtgctcaTcatgggccaggatggccttg	14	12	2	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	11982841	11982841	T	C	SNP	KIAA2013	ENST00000376576	human	ensembl	69_37n	-1	known	missense	c.1739	p.D580G	1.000	pfam_DUF2152	pfam_DUF2152	-	no_errors	KIAA2013	HGNC	ENSG00000116685	43	0	0	51	10	16.39	-	-	-	C	11982841	T	C	11982841	3	2	360	1	0	0	0	0	1	0	0	0	8319	1435	50	5	173	5	KIAA2013	1	11982841	Missense_Mutation	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09		11982841	237267780	1	38566										
NFIA	0	genome.wustl.edu	37	chr1	61848997	61848997	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acctcctccctgggaacggcGttcacacagcatcaccgacc	8	18	2	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	61848997	61848997	G	A	SNP	NFIA	ENST00000371189	human	ensembl	69_37n	1	known	silent	c.1170	p.A390	0.740	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599	61	0	0	55	21	27.63	-	-	-	A	61848997	G	A	61848997	2	1	360	1	0	0	0	0	0	0	0	1	10442	1132	40	1		1	NFIA	1	61848997	Silent	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09	49866156	61848997	187401624	2	38567										
INSRR	0	genome.wustl.edu	37	chr1	156823744	156823744	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggtggagaggtggcagagcTcctggttcttctccacacgc	14	11	2	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	156823744	156823744	T	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.437	p.E146V	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	17	0	0	6	18	75	-	-	-	A	156823744	T	A	156823744	3	1	360	1	0	0	0	0	1	0	0	0	7828	1551	54	5	3539	5	INSRR	1	156823744	Missense_Mutation	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09	94974747	156823744	92426877	3	38568										
SNX17	0	genome.wustl.edu	37	chr2	27598768	27598768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccggggccggggtgaggtgcGcctggaactggcttttgaat	18	9	0	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	27598768	27598768	G	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	missense	c.1034	p.R345H	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	42	0	0	22	11	33.33	-	-	-	A	27598768	G	A	27598768	3	1	360	1	0	0	0	0	1	0	0	0	14977	1087	38	1	1076	1	SNX17	2	27598768	Missense_Mutation	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09		27598768	215600605	4	38569										
LRP1B	0	genome.wustl.edu	37	chr2	141081609	141081609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atatatataatcttcaaagaTatcgatcctatgtggatgta	6	5	2	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	141081609	141081609	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12367	p.I4123V	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	41	0	0	53	22	29.33	-	-	-	C	141081609	T	C	141081609	3	2	360	1	0	0	0	0	1	0	0	0	9021	1406	49	5	1476	5	LRP1B	2	141081609	Missense_Mutation	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09	113482841	141081609	102117764	5	38570										
COL7A1	0	genome.wustl.edu	37	chr3	48630811	48630811	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagcaaatagcttgaccccCtgccccttcagcctttgggc	8	16	1	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	48630811	48630811	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.498	p.Q166	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	43	0	0	29	12	29.27	-	-	-	T	48630811	C	T	48630811	2	4	360	1	0	0	0	0	0	0	0	1	3734	680	24	4		4	COL7A1	3	48630811	Silent	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		48630811	149391619	6	38571										
GATA2	0	genome.wustl.edu	37	chr3	128200691	128200691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgtagtagaggccacaggCgttgcagacagggtccccgt	14	11	0	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	128200691	128200691	C	T	SNP	GATA2	ENST00000341105	human	ensembl	69_37n	-1	known	missense	c.1114	p.A372T	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348	50	0	0	21	5	18.52	-	-	-	T	128200691	C	T	128200691	3	4	360	1	0	0	0	0	1	0	0	0	6304	768	27	1	336	1	GATA2	3	128200691	Missense_Mutation	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09	79569880	128200691	69821739	7	38572										
MECOM	0	genome.wustl.edu	37	chr3	168802736	168802736	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggatagcactggattccgcCgcagccctggccatactgtg	12	13	0	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	168802736	168802736	C	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.3654	p.A1218	0.011	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	63	0	0	55	27	32.93	-	-	-	T	168802736	C	T	168802736	2	4	360	1	0	0	0	0	0	0	0	1	9493	639	23	1		1	MECOM	3	168802736	Silent	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09	40602045	168802736	29219694	8	38573										
PCDHA3	0	genome.wustl.edu	37	chr5	140180885	140180885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcggccagctccactactccGtctctgaggaggccaagcat	11	15	1	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140180885	140180885	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.103	p.V35I	0.046	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	44	0	0	39	19	32.76	-	-	-	A	140180885	G	A	140180885	3	1	360	1	0	0	0	0	1	0	0	0	11598	1145	40	1	105	1	PCDHA3	5	140180885	Missense_Mutation	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09		140180885	40734375	9	38574										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725928	140725928	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcccccagcccaactatgcGgacacgctcatcagccagga	8	17	2	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140725928	140725928	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.2328	p.A776	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	65	0	0	96	33	25.58	-	-	-	A	140725928	G	A	140725928	2	1	360	1	0	0	0	0	0	0	0	1	11628	1103	39	1		1	PCDHGA3	5	140725928	Silent	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09	545043	140725928	40189332	10	38575										
PAPOLB	0	genome.wustl.edu	37	chr7	4900824	4900824	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtaaaatttcatcggttacCcggcaaccattaaggcttct	7	10	2	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	4900824	4900824	C	T	SNP	PAPOLB	ENST00000404991	human	ensembl	69_37n	-1	known	silent	c.615	p.R205	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823	49	0	0	156	104	40	-	-	-	T	4900824	C	T	4900824	2	4	360	1	0	0	0	0	0	0	0	1	11503	610	22	4		4	PAPOLB	7	4900824	Silent	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		4900824	154237839	11	38576										
EXTL3	0	genome.wustl.edu	37	chr8	28595120	28595120	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccccatcagtcctggctctaCaactccaactactcctgtga	5	17	2	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	28595120	28595120	C	G	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	nonsense	c.2361	p.Y787*	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	58	0	0	98	59	37.34	-	-	-	G	28595120	C	G	28595120	4	3	360	1	0	0	0	0	0	1	0	0	5364	489	17	4	2371	4	EXTL3	8	28595120	Nonsense_Mutation	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		28595120	117768902	12	38577										
FGFR1	0	genome.wustl.edu	37	chr8	38314914	38314914	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacggcctagcggtgcagagTgtggctgtgaccagcacagc	16	11	0	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	38314914	38314914	T	C	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.150	p.T50	0.968	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	39	0	0	56	17	23.29	-	-	-	C	38314914	T	C	38314914	2	2	360	1	0	0	0	0	0	0	0	1	5909	1683	59	5		5	FGFR1	8	38314914	Silent	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09	9719794	38314914	108049108	13	38578										
RB1CC1	0	genome.wustl.edu	37	chr8	53596281	53596281	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaaaattggatttgtatccTatattttttaaaaaaggaga	7	2	0	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	53596281	53596281	T	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	splice_site	c.199-2	e3-2	1.000	-	-	-	no_errors	RB1CC1	HGNC	ENSG00000023287	18	0	0	22	9	29.03	-	-	-	G	53596281	T	G	53596281	5	3	360	1	0	0	0	0	0	0	1	0	13182	1536	53	5	4667	5	RB1CC1	8	53596281	Splice_Site	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09	15281367	53596281	92767741	14	38579										
CHD4	0	genome.wustl.edu	37	chr12	6702279	6702279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagactgattgttcttcagcCgatgggcttcatccacgatg	10	10	3	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	6702279	6702279	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2630	p.R877Q	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	29	0	0	44	28	38.89	-	-	-	T	6702279	C	T	6702279	3	4	360	1	0	0	0	0	1	0	0	0	3356	652	23	1	3204	1	CHD4	12	6702279	Missense_Mutation	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		6702279	127149616	15	38580										
CDKN1B	0	genome.wustl.edu	37	chr12	12871006	12871007	+	Frame_Shift_Ins	INS	-	-	GG													0	0	1	0	0	0	1	1	0	ggcaagtacgagtggcaagaINSggtggagaagggcagcttgc							TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	12871006	12871007	-	GG	INS	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_ins	c.233_234	p.V79fs	0.961:0.979	pfam_CDI	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	38	0	0	34	8	19.05	-	-	-	GG	12871007	-	GG	12871006	7	5	360	1	0	1	1	0	0	0	0	0	3188	304	11	0	235	0	CDKN1B	12	12871006	Frame_Shift_Ins	INS	-	TCGA-AQ-A1H3-01A-31D-A13L-09	6168727	12871006	120980889	16	38581										
TCTN1	0	genome.wustl.edu	37	chr12	111085646	111085646	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggcaggcttcagagctccAccagccatcaatgccaggct	11	14	2	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	111085646	111085646	A	C	SNP	TCTN1	ENST00000481093	human	ensembl	69_37n	1	putative	missense	c.167	p.H56P	0.226	NULL	NULL	-	no_stop_codon	TCTN1	HGNC	ENSG00000204852	76	0	0	57	25	30.49	-	-	-	C	111085646	A	C	111085646	3	2	360	1	0	0	0	0	1	0	0	0	15817	146	6	5	1954	5	TCTN1	12	111085646	Missense_Mutation	SNP	A	TCGA-AQ-A1H3-01A-31D-A13L-09	98214640	111085646	22766249	17	38582										
TBX3	0	genome.wustl.edu	37	chr12	115115438	115115439	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	aaccttttgcaaaagggttgINSttgtctatttttaactgggt							TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	115115438	115115439	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.N296fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	78	0	0	169	41	19.52	-	-	-	T	115115439	-	T	115115438	7	5	360	1	0	1	1	0	0	0	0	0	15754	1368	48	0	1359	0	TBX3	12	115115438	Frame_Shift_Ins	INS	-	TCGA-AQ-A1H3-01A-31D-A13L-09	4029792	115115438	18736457	18	38583										
SIX6	0	genome.wustl.edu	37	chr14	60976319	60976319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttcacggtggcaactaccGcgagctctatcatatcctgg	9	13	3	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	60976319	60976319	G	A	SNP	SIX6	ENST00000327720	human	ensembl	69_37n	1	known	missense	c.203	p.R68H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX6	HGNC	ENSG00000184302	27	0	0	25	18	41.86	-	-	-	A	60976319	G	A	60976319	3	1	360	1	0	0	0	0	1	0	0	0	14440	1087	38	1	205	1	SIX6	14	60976319	Missense_Mutation	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09		60976319	46373221	19	38584										
HEATR4	0	genome.wustl.edu	37	chr14	73976100	73976100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatattgctgctgccatccGcacatgggcattcttgtcac	9	13	2	0			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	73976100	73976100	G	A	SNP	HEATR4	ENST00000334988	human	ensembl	69_37n	-1	known	missense	c.1636	p.R546W	0.975	pfam_HEAT,superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	40	0	0	58	28	32.56	-	-	-	A	73976100	G	A	73976100	3	1	360	1	0	0	0	0	1	0	0	0	7081	1086	38	1	1488	1	HEATR4	14	73976100	Missense_Mutation	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09	12999781	73976100	33373440	20	38585										
DUOX2	0	genome.wustl.edu	37	chr15	45388167	45388167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgtgaaggggtggtactcGgtggtccccagagccaggca	17	9	0	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	45388167	45388167	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.3939	p.T1313	0.076	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	25	0	0	27	23	46	-	-	-	A	45388167	G	A	45388167	2	1	360	1	0	0	0	0	0	0	0	1	4836	1103	39	1		1	DUOX2	15	45388167	Silent	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09		45388167	57143225	21	38586										
C15orf59	0	genome.wustl.edu	37	chr15	74032293	74032293	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggctttctgtctagtggctgTgtagggcagaaccgtctgcg	15	9	3	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	74032293	74032293	T	G	SNP	C15orf59	ENST00000379822	human	ensembl	69_37n	-1	known	missense	c.847	p.T283P	0.995	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363	29	0	0	17	15	46.88	-	-	-	G	74032293	T	G	74032293	3	3	360	1	0	0	0	0	1	0	0	0	1819	1696	59	5	38	5	C15orf59	15	74032293	Missense_Mutation	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09	28644126	74032293	28499099	22	38587										
CCDC135	0	genome.wustl.edu	37	chr16	57762336	57762336	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgaagagcacctgcggcaggTggagacccagctggactacc	14	13	0	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	57762336	57762336	T	G	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.2231	p.V744G	0.992	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	13	0	0	9	10	52.63	-	-	-	G	57762336	T	G	57762336	3	3	360	1	0	0	0	0	1	0	0	0	2794	1696	59	5	2289	5	CCDC135	16	57762336	Missense_Mutation	SNP	T	TCGA-AQ-A1H3-01A-31D-A13L-09		57762336	32592417	23	38588										
CBFB	0	genome.wustl.edu	37	chr16	67070640	67070643	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													0	0	1	0	0	0	1	1	0	agccgagagtatgtcgacttAgaaagagaagcaggcaaggt							TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	AGAA	AGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	67070640	67070643	AGAA	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_del	c.264_267	p.R90fs	1.000:1.000:1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	41	0	0	44	26	37.14	-	-	-	-	67070643	AGAA	-	67070640	7	5	360	1	0	1	0	1	0	0	0	0	2724	417	15	0	274	0	CBFB	16	67070640	Frame_Shift_Del	DEL	AGAA	TCGA-AQ-A1H3-01A-31D-A13L-09	9308304	67070640	23284113	24	38589										
CD33	0	genome.wustl.edu	37	chr19	51729330	51729330	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagagaaccatccagctcaaCgtcacctgtaagtgctgggc	11	12	2	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	19	51729330	51729330	C	T	SNP	CD33	ENST00000262262	human	ensembl	69_37n	1	known	silent	c.690	p.N230	0.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	26	0	0	33	24	42.11	-	-	-	T	51729330	C	T	51729330	2	4	360	1	0	0	0	0	0	0	0	1	3034	535	19	1		1	CD33	19	51729330	Silent	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		51729330	7399653	25	38590										
STARD8	0	genome.wustl.edu	37	chrX	67938428	67938428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcatcaatgccccgtgaaCggcgcgattcaggtgttggg	15	10	2	1			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	67938428	67938428	C	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	missense	c.1672	p.R558W	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	30	0	0	25	13	34.21	-	-	-	T	67938428	C	T	67938428	3	4	360	1	0	0	0	0	1	0	0	0	15354	527	19	1	1694	1	STARD8	23	67938428	Missense_Mutation	SNP	C	TCGA-AQ-A1H3-01A-31D-A13L-09		67938428	87332132	26	38591										
ARHGEF6	0	genome.wustl.edu	37	chrX	135827435	135827435	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtgctagaaactgctccctGtgggtttgtctgagaagtat	12	7	1	2			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	135827435	135827435	G	C	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.406	p.Q136E	0.259	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	95	0	0	183	79	30.15	-	-	-	C	135827435	G	C	135827435	3	2	360	1	0	0	0	0	1	0	0	0	912	1386	48	4	2000	4	ARHGEF6	23	135827435	Missense_Mutation	SNP	G	TCGA-AQ-A1H3-01A-31D-A13L-09	67889007	135827435	19443125	27	38592										
DDOST	0	genome.wustl.edu	37	chr1	20982252	20982252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ctcaatcccgcactcactgcCcagctctcgaagagggtcac	8	17	4	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	20982252	20982252	C	T	SNP	DDOST	ENST00000375048	human	ensembl	69_37n	-1	known	missense	c.424	p.G142S	1.000	pfam_OligosaccharylTrfase_su_Wbp1	pfam_OligosaccharylTrfase_su_Wbp1	-	no_errors	DDOST	HGNC	ENSG00000244038	12	0	0	8	4	33.33	-	-	-	T	20982252	C	T	20982252	3	4	361	1	0	0	0	0	1	0	0	0	4366	623	22	4	978	4	DDOST	1	20982252	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		20982252	228268369	1	38593										
MACF1	0	genome.wustl.edu	37	chr1	39851166	39851166	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	agcaactgaatgaggcagctCagggcatcctaacaggccct	11	12	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	39851166	39851166	C	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	nonsense	c.7723	p.Q2575*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	44	0	0	36	9	20	-	-	-	T	39851166	C	T	39851166	4	4	361	1	0	0	0	0	0	1	0	0	9211	827	29	2	14080	2	MACF1	1	39851166	Nonsense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	18868914	39851166	209399455	2	38594										
SGIP1	0	genome.wustl.edu	37	chr1	67099831	67099831	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttctggctcagagccctctcGttaactctgtctcaggtact	8	13	5	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	67099831	67099831	G	C	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	silent	c.168	p.S56	0.999	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	44	0	0	32	7	17.95	-	-	-	C	67099831	G	C	67099831	2	2	361	1	0	0	0	0	0	0	0	1	14294	1160	40	3		3	SGIP1	1	67099831	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	27248665	67099831	182150790	3	38595										
ABCA4	0	genome.wustl.edu	37	chr1	94520758	94520758	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gacagcaggaagctgaattcGtccccttccgtgggactgtt	12	11	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	94520758	94520758	G	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.2496	p.D832E	0.996	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	69	0	0	24	12	33.33	-	-	-	C	94520758	G	C	94520758	3	2	361	1	0	0	0	0	1	0	0	0	34	1136	40	3	4465	3	ABCA4	1	94520758	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	27420927	94520758	154729863	4	38596										
ANKRD35	0	genome.wustl.edu	37	chr1	145562187	145562187	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gtactgagactgagcaacagTaacttgctggaggagttagg	14	6	0	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	145562187	145562187	T	A	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	missense	c.1875	p.S625R	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	47	0	0	74	16	17.78	-	-	-	A	145562187	T	A	145562187	3	1	361	1	0	0	0	0	1	0	0	0	663	1635	57	5	1913	5	ANKRD35	1	145562187	Missense_Mutation	SNP	T	TCGA-AQ-A54N-01A-11D-A25Q-09	51041429	145562187	103688434	5	38597										
HCN3	0	genome.wustl.edu	37	chr1	155255569	155255569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cccacatgccgctgtttgccCatgccgaccccagcttcgtc	8	19	0	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	155255569	155255569	C	T	SNP	HCN3	ENST00000368358	human	ensembl	69_37n	1	known	missense	c.1291	p.H431Y	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630	39	0	0	48	21	30.43	-	-	-	T	155255569	C	T	155255569	3	4	361	1	0	0	0	0	1	0	0	0	7049	594	21	4	1313	4	HCN3	1	155255569	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	9693382	155255569	93995052	6	38598										
DDR2	0	genome.wustl.edu	37	chr1	162724557	162724557	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggggcgccatgcaggaggtcAtggcatcgagtttgccccca	15	12	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	162724557	162724557	A	G	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.329	p.H110R	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	37	0	0	42	12	21.82	-	-	-	G	162724557	A	G	162724557	3	3	361	1	0	0	0	0	1	0	0	0	4368	217	8	5	339	5	DDR2	1	162724557	Missense_Mutation	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09	7468988	162724557	86526064	7	38599										
USH2A	0	genome.wustl.edu	37	chr1	215953193	215953193	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttgttttctcacctgtgaccGtatgctgtctcctgtcagtg	9	11	3	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	215953193	215953193	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10931	p.T3644R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	38	0	0	33	21	38.89	-	-	-	C	215953193	G	C	215953193	3	2	361	1	0	0	0	0	1	0	0	0	17133	1145	40	3	4749	3	USH2A	1	215953193	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	53228636	215953193	33297428	8	38600										
IARS2	0	genome.wustl.edu	37	chr1	220275717	220275717	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttttatagggcttggtttatCgatcttacaaacctgtgttt	8	6	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	220275717	220275717	C	A	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	silent	c.712	p.R238	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	38	0	0	36	12	25	-	-	-	A	220275717	C	A	220275717	2	1	361	1	0	0	0	0	0	0	0	1	7528	876	31	3		3	IARS2	1	220275717	Silent	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	4322524	220275717	28974904	9	38601										
FMN2	0	genome.wustl.edu	37	chr1	240370261	240370261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggcttgagaatggagtgacaGcctcaggcgatgtctgtctc	14	9	3	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	1	240370261	240370261	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.2149	p.A717T	0.000	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	46	0	0	42	13	23.64	-	-	-	A	240370261	G	A	240370261	3	1	361	1	0	0	0	0	1	0	0	0	5996	971	34	4	2167	4	FMN2	1	240370261	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	20094544	240370261	8880360	10	38602										
NRXN1	0	genome.wustl.edu	37	chr2	50723212	50723212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aggttagcaccatttcccaaAtcaaacacgtaatgtaagta	6	9	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	50723212	50723212	A	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.2877	p.D959E	0.996	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	95	0	0	32	57	64.04	-	-	-	T	50723212	A	T	50723212	3	4	361	1	0	0	0	0	1	0	0	0	10738	98	4	5	1921	5	NRXN1	2	50723212	Missense_Mutation	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09		50723212	192476161	11	38603										
SERTAD2	0	genome.wustl.edu	37	chr2	64863944	64863944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gaccgtcacagggagacacgAttttgccttccagcccatct	9	14	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	64863944	64863944	A	G	SNP	SERTAD2	ENST00000313349	human	ensembl	69_37n	-1	known	missense	c.62	p.I21T	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD2	HGNC	ENSG00000179833	48	0	0	30	6	16.67	-	-	-	G	64863944	A	G	64863944	3	3	361	1	0	0	0	0	1	0	0	0	14209	333	12	5	886	5	SERTAD2	2	64863944	Missense_Mutation	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09	14140732	64863944	178335429	12	38604										
RGPD4	0	genome.wustl.edu	37	chr2	108473239	108473239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	acatgttgctaaacttaagtCgtggcaagcaagatttttta	8	6	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	108473239	108473239	C	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.1090	p.R364C	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	9	0	0	4	3	42.86	-	-	-	T	108473239	C	T	108473239	3	4	361	1	0	0	0	0	1	0	0	0	13371	884	31	1	1124	1	RGPD4	2	108473239	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	43609295	108473239	134726134	13	38605										
CCDC74A	0	genome.wustl.edu	37	chr2	132285769	132285769	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ccaagctccatgaggagatcGagcatctgaagcgggaaaac	12	10	1	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	132285769	132285769	G	C	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	1	known	missense	c.226	p.E76Q	0.995	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	72	0	0	26	30	53.57	-	-	-	C	132285769	G	C	132285769	3	2	361	1	0	0	0	0	1	0	0	0	2874	1059	37	3	228	3	CCDC74A	2	132285769	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	23812530	132285769	110913604	14	38606										
ACVR2A	0	genome.wustl.edu	37	chr2	148684693	148684693	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	attgaagaatgttgggatcaCgacgcagaagccaggttatc	12	7	1	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	148684693	148684693	C	G	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.1392	p.H464Q	0.870	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	60	0	0	17	26	60.47	-	-	-	G	148684693	C	G	148684693	3	3	361	1	0	0	0	0	1	0	0	0	223	535	19	3	1434	3	ACVR2A	2	148684693	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	16398924	148684693	94514680	15	38607										
XIRP2	0	genome.wustl.edu	37	chr2	168115459	168115459	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cctgctccaaaaccaagcctCagcagaggccttatggtaaa	8	13	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	168115459	168115459	C	T	SNP	XIRP2	ENST00000420519	human	ensembl	69_37n	1	known	silent	c.2502	p.L834	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092	20	0	0	27	8	22.86	-	-	-	T	168115459	C	T	168115459	2	4	361	1	0	0	0	0	0	0	0	1	17527	813	29	2		2	XIRP2	2	168115459	Silent	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	19430766	168115459	75083914	16	38608										
ADAM23	0	genome.wustl.edu	37	chr2	207432046	207432046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cttttcaacaggccaacaaaGgttagtaacttagaaagcat	7	8	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	2	207432046	207432046	G	T	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	missense	c.1494	p.K498N	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	40	0	0	35	4	10.26	-	-	-	T	207432046	G	T	207432046	3	4	361	1	0	0	0	0	1	0	0	0	245	1014	35	4	1552	4	ADAM23	2	207432046	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	39316587	207432046	35767327	17	38609										
FBLN2	0	genome.wustl.edu	37	chr3	13679353	13679353	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gacgtggagatgaagctctgGaggcagggctccgtcaccac	15	11	2	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	3	13679353	13679353	G	C	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	missense	c.3630	p.W1210C	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	28	0	0	3	8	72.73	-	-	-	C	13679353	G	C	13679353	3	2	361	1	0	0	0	0	1	0	0	0	5745	1183	41	2	2386	2	FBLN2	3	13679353	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		13679353	184343077	18	38610										
RNF123	0	genome.wustl.edu	37	chr3	49737699	49737699	+	Frame_Shift_Del	DEL	T	T	-													0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aggctgtgctcatgagcttcTtgctgggcatcgtggagaag							TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	3	49737699	49737699	T	-	DEL	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	frame_shift_del	c.1024	p.L342fs	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	109	0	0	8	39	81.25	-	-	-	-	49737699	T	-	49737699	7	5	361	1	0	1	0	1	0	0	0	0	13519	1606	56	0	1070	0	RNF123	3	49737699	Frame_Shift_Del	DEL	T	TCGA-AQ-A54N-01A-11D-A25Q-09	36058346	49737699	148284731	19	38611										
HGD	0	genome.wustl.edu	37	chr3	120347346	120347346	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gagtccccactttgtgaccgCcagacttaaagatgattcaa	8	11	1	4			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	3	120347346	120347346	C	A	SNP	HGD	ENST00000283871	human	ensembl	69_37n	-1	known	missense	c.1219	p.A407S	1.000	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924	55	0	0	32	34	51.52	-	-	-	A	120347346	C	A	120347346	3	1	361	1	0	0	0	0	1	0	0	0	7135	739	26	4	122	4	HGD	3	120347346	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	70609647	120347346	77675084	20	38612										
DGKG	0	genome.wustl.edu	37	chr3	185882704	185882704	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tacctgatggtgacagaggcGcactgggccagcctcctgcc	13	14	0	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	3	185882704	185882704	G	T	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	nonsense	c.2199	p.C733*	0.998	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	63	0	0	33	26	44.07	-	-	-	T	185882704	G	T	185882704	4	4	361	1	0	0	0	0	0	1	0	0	4505	1079	38	3	188	3	DGKG	3	185882704	Nonsense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	65535358	185882704	12139726	21	38613										
ACAP2	0	genome.wustl.edu	37	chr3	195063301	195063301	+	Frame_Shift_Del	DEL	G	G	-													0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttgtttgtttctttgtacttGggcattttttactaacgcat							TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	3	195063301	195063301	G	-	DEL	ACAP2	ENST00000326793	human	ensembl	69_37n	-1	known	frame_shift_del	c.427	p.Q143fs	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331	93	0	0	74	43	36.75	-	-	-	-	195063301	G	-	195063301	7	5	361	1	0	1	0	1	0	0	0	0	119	1357	47	0	1981	0	ACAP2	3	195063301	Frame_Shift_Del	DEL	G	TCGA-AQ-A54N-01A-11D-A25Q-09	9180597	195063301	2959129	22	38614										
TKTL2	0	genome.wustl.edu	37	chr4	164394064	164394064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ctgactctcaattaatttgaCaattgcatctgctctttctt	4	10	4	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	4	164394064	164394064	C	T	SNP	TKTL2	ENST00000280605	human	ensembl	69_37n	-1	known	missense	c.823	p.V275I	0.004	NULL	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005	27	0	0	26	4	13.33	-	-	-	T	164394064	C	T	164394064	3	4	361	1	0	0	0	0	1	0	0	0	16031	478	17	4	1061	4	TKTL2	4	164394064	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		164394064	26760212	23	38615										
C5orf42	0	genome.wustl.edu	37	chr5	37142576	37142576	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cttcatccatatgggtcaaaAaacgcactaatccagagtat	6	10	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	5	37142576	37142576	A	C	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.8306	p.F2769C	0.002	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	18	0	0	17	6	26.09	-	-	-	C	37142576	A	C	37142576	3	2	361	1	0	0	0	0	1	0	0	0	2322	14	1	5	1327	5	C5orf42	5	37142576	Missense_Mutation	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09		37142576	143772684	24	38616										
SKIV2L2	0	genome.wustl.edu	37	chr5	54637581	54637581	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gggttatatttgatgaaattCattatatgagagattcaggt	10	2	2	4			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	5	54637581	54637581	C	T	SNP	SKIV2L2	ENST00000230640	human	ensembl	69_37n	1	known	missense	c.763	p.H255Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	53	0	0	35	4	10.26	-	-	-	T	54637581	C	T	54637581	3	4	361	1	0	0	0	0	1	0	0	0	14449	826	29	2	789	2	SKIV2L2	5	54637581	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	17495005	54637581	126277679	25	38617										
PGGT1B	0	genome.wustl.edu	37	chr5	114573581	114573581	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tcttccagctgaagggctctCaagcccgctaagcaagcttc	9	14	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	5	114573581	114573581	C	G	SNP	PGGT1B	ENST00000419445	human	ensembl	69_37n	-1	known	missense	c.453	p.L151F	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219	47	0	0	4	18	81.82	-	-	-	G	114573581	C	G	114573581	3	3	361	1	0	0	0	0	1	0	0	0	11863	825	29	2	704	2	PGGT1B	5	114573581	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	59936000	114573581	66341679	26	38618										
ADAMTS2	0	genome.wustl.edu	37	chr5	178549720	178549720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gatgccgaagctgtcgtccgCggtgcggcagagcactggcc	16	13	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	5	178549720	178549720	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.3013	p.A1005T	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	51	0	0	4	12	75	-	-	-	T	178549720	C	T	178549720	3	4	361	1	0	0	0	0	1	0	0	0	265	768	27	1	634	1	ADAMTS2	5	178549720	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	63976139	178549720	2365540	27	38619										
PPP1R10	0	genome.wustl.edu	37	chr6	30569978	30569978	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	attcctccgccagggccttcAtggggacgatggccactgcc	12	15	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	6	30569978	30569978	A	G	SNP	PPP1R10	ENST00000376511	human	ensembl	69_37n	-1	known	silent	c.2448	p.H816	0.954	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569	87	0	0	42	13	23.64	-	-	-	G	30569978	A	G	30569978	2	3	361	1	0	0	0	0	0	0	0	1	12429	214	8	5		5	PPP1R10	6	30569978	Silent	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09		30569978	140545089	28	38620										
TAAR1	0	genome.wustl.edu	37	chr6	132967074	132967074	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	attaaactgtacagggaagcAcggacatcatttgaccagtt	9	8	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	6	132967074	132967074	A	G	SNP	TAAR1	ENST00000275216	human	ensembl	69_37n	-1	known	silent	c.69	p.R23	0.000	prints_Trac_amin_rcpt_1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trac_amin_rcpt_1,prints_Trace_amine_rcpt	-	no_errors	TAAR1	HGNC	ENSG00000146399	67	0	0	8	29	78.38	-	-	-	G	132967074	A	G	132967074	2	3	361	1	0	0	0	0	0	0	0	1	15581	146	6	5		5	TAAR1	6	132967074	Silent	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09	102397096	132967074	38147993	29	38621										
TIAM2	0	genome.wustl.edu	37	chr6	155451207	155451207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tccatgccagcttcccacctGgcgatgccaaaaagcctttc	7	16	0	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	6	155451207	155451207	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.850	p.G284S	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	67	0	0	35	4	10.26	-	-	-	A	155451207	G	A	155451207	3	1	361	1	0	0	0	0	1	0	0	0	15986	1348	47	4	852	4	TIAM2	6	155451207	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	22484133	155451207	15663860	30	38622										
TNRC18	0	genome.wustl.edu	37	chr7	5364777	5364777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggctttgctccttttggcagCggtcagggagctggcgtgag	17	9	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	7	5364777	5364777	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.6250	p.A2084T	0.021	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	85	0	0	26	20	43.48	-	-	-	T	5364777	C	T	5364777	3	4	361	1	0	0	0	0	1	0	0	0	16434	768	27	1	2700	1	TNRC18	7	5364777	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		5364777	153773886	31	38623										
TRIL	0	genome.wustl.edu	37	chr7	28995298	28995298	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cgcgccgccgcccgcactgtCcatgaagcggtcgcagggga	15	16	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	7	28995298	28995298	C	G	SNP	TRIL	ENST00000322982	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734	55	0	0	18	18	50	-	-	-	G	28995298	C	G	28995298	1	3	361	0	1	0	0	0	0	0	0	0	16581	855	30	2		2	TRIL	7	28995298	RNA	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	23630521	28995298	130143365	32	38624										
ABCB1	0	genome.wustl.edu	37	chr7	87179797	87179797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	actgtaccttaacttcttttCgagatgggtaactgaagtga	9	7	1	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	7	87179797	87179797	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.1211	p.R404Q	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	54	0	0	44	16	26.67	-	-	-	T	87179797	C	T	87179797	3	4	361	1	0	0	0	0	1	0	0	0	40	884	31	1	2703	1	ABCB1	7	87179797	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	58184499	87179797	71958866	33	38625										
FBXO25	0	genome.wustl.edu	37	chr8	417720	417720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ctttcttcatgatctcgaagGactaccatcttgctttacta	5	11	4	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	8	417720	417720	G	T	SNP	FBXO25	ENST00000276326	human	ensembl	69_37n	1	known	missense	c.988	p.D330Y	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO25	HGNC	ENSG00000147364	149	0	0	100	22	18.03	-	-	-	T	417720	G	T	417720	3	4	361	1	0	0	0	0	1	0	0	0	5782	1188	41	2	1022	2	FBXO25	8	417720	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		417720	145946302	34	38626										
ADRA1A	0	genome.wustl.edu	37	chr8	26722331	26722331	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gagtgcaggtgtcggtgacaGgctacggagaggatcactag	17	7	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	8	26722331	26722331	G	T	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	silent	c.156	p.A52	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	50	0	0	22	22	50	-	-	-	T	26722331	G	T	26722331	2	4	361	1	0	0	0	0	0	0	0	1	334	987	35	4		4	ADRA1A	8	26722331	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	26304611	26722331	119641691	35	38627										
PARP10	0	genome.wustl.edu	37	chr8	145057586	145057586	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ccaaggcagccctgagcgccCggtccagctcctccacatcc	9	20	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	8	145057586	145057586	C	A	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.2171	p.R724L	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	62	0	0	5	21	80.77	-	-	-	A	145057586	C	A	145057586	3	1	361	1	0	0	0	0	1	0	0	0	11528	652	23	3	922	3	PARP10	8	145057586	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	118335255	145057586	1306436	36	38628										
IFNK	0	genome.wustl.edu	37	chr9	27524538	27524538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gaaaacatagcttttgagttGccccaagagtttctgcaata	8	8	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	9	27524538	27524538	G	T	SNP	IFNK	ENST00000276943	human	ensembl	69_37n	1	known	missense	c.204	p.L68F	0.369	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNK	HGNC	ENSG00000147896	60	0	0	29	34	53.97	-	-	-	T	27524538	G	T	27524538	3	4	361	1	0	0	0	0	1	0	0	0	7605	1310	46	4	206	4	IFNK	9	27524538	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		27524538	113688893	37	38629										
CEP78	0	genome.wustl.edu	37	chr9	80877837	80877837	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tactaggaaaaactggaggaGtgcctaaagcagttaaagga	12	5	0	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	9	80877837	80877837	G	A	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	silent	c.1398	p.E466	0.994	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	53	0	0	32	4	11.11	-	-	-	A	80877837	G	A	80877837	2	1	361	1	0	0	0	0	0	0	0	1	3291	1020	36	4		4	CEP78	9	80877837	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	53353299	80877837	60335594	38	38630										
WNK2	0	genome.wustl.edu	37	chr9	96030076	96030076	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	agcgggaaacgttcatcgagCagatgaaggatgtcatggac	14	7	2	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	9	96030076	96030076	C	T	SNP	WNK2	ENST00000297954	human	ensembl	69_37n	1	known	nonsense	c.3745	p.Q1249*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	74	0	0	21	4	16	-	-	-	T	96030076	C	T	96030076	4	4	361	1	0	0	0	0	0	1	0	0	17475	711	25	4	3807	4	WNK2	9	96030076	Nonsense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	15152239	96030076	45183355	39	38631										
C9orf84	0	genome.wustl.edu	37	chr9	114543270	114543270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggtccaagactgaggtatctGtcattcccggaactgaaaca	10	10	2	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	9	114543270	114543270	G	T	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.5	p.T2K	0.004	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	37	0	0	20	3	13.04	-	-	-	T	114543270	G	T	114543270	3	4	361	1	0	0	0	0	1	0	0	0	2525	1377	48	4	4566	4	C9orf84	9	114543270	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	18513194	114543270	26670161	40	38632										
PARG	0	genome.wustl.edu	37	chr10	51077584	51077584	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gtttctccggtttccttgatGaacgtccctcaaacaatcta	6	12	3	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	10	51077584	51077584	G	A	SNP	PARG	ENST00000402038	human	ensembl	69_37n	-1	known	missense	c.551	p.S184L	1.000	pfam_Poly_GlycHdrlase	pfam_Poly_GlycHdrlase	-	no_start_codon	PARG	HGNC	ENSG00000227345	277	0	0	208	179	46.25	-	-	-	A	51077584	G	A	51077584	3	1	361	1	0	0	0	0	1	0	0	0	11521	1294	45	2	960	2	PARG	10	51077584	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		51077584	84457163	41	38633										
HECTD2	0	genome.wustl.edu	37	chr10	93240885	93240885	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	atgatcttagagcatattttAtacttttacaggtaagagaa	7	4	1	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	10	93240885	93240885	A	T	SNP	HECTD2	ENST00000446394	human	ensembl	69_37n	1	known	missense	c.700	p.I234L	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	23	0	0	20	10	33.33	-	-	-	T	93240885	A	T	93240885	3	4	361	1	0	0	0	0	1	0	0	0	7091	449	16	5	750	5	HECTD2	10	93240885	Missense_Mutation	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09	42163301	93240885	42293862	42	38634										
C10orf118	0	genome.wustl.edu	37	chr10	115887422	115887422	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttctgcactgcttcgagcatTcagggaccctgaagacaaaa	9	11	2	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	10	115887422	115887422	T	A	SNP	C10orf118	ENST00000369287	human	ensembl	69_37n	-1	known	missense	c.2191	p.N731Y	1.000	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813	26	0	0	46	12	20.69	-	-	-	A	115887422	T	A	115887422	3	1	361	1	0	0	0	0	1	0	0	0	1597	1783	62	5	517	5	C10orf118	10	115887422	Missense_Mutation	SNP	T	TCGA-AQ-A54N-01A-11D-A25Q-09	22646537	115887422	19647325	43	38635										
LRRC55	0	genome.wustl.edu	37	chr11	56949607	56949607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cactcggatgccggcaccagCtgccccgtcctttgcacatg	10	17	0	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	11	56949607	56949607	C	G	SNP	LRRC55	ENST00000497933	human	ensembl	69_37n	1	known	missense	c.240	p.S80R	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908	110	0	0	42	22	34.38	-	-	-	G	56949607	C	G	56949607	3	3	361	1	0	0	0	0	1	0	0	0	9077	796	28	4	242	4	LRRC55	11	56949607	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		56949607	78056909	44	38636										
CD6	0	genome.wustl.edu	37	chr11	60776307	60776307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cacaaagaggacgcgggcgcGgtgtgctcaggtcagtgggc	18	10	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	11	60776307	60776307	G	C	SNP	CD6	ENST00000538611	human	ensembl	69_37n	1	novel	missense	c.302	p.R101P	0.023	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD6	HGNC	ENSG00000013725	8	0	0	4	5	55.56	-	-	-	C	60776307	G	C	60776307	3	2	361	1	0	0	0	0	1	0	0	0	3057	1103	39	3	785	3	CD6	11	60776307	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	3826700	60776307	74230209	45	38637										
DENND5B	0	genome.wustl.edu	37	chr12	31595754	31595754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	agacatcggactgtaactttGgaaagaacccctgctcatat	8	10	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	12	31595754	31595754	G	T	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.2072	p.P691Q	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	77	0	0	62	7	10.14	-	-	-	T	31595754	G	T	31595754	3	4	361	1	0	0	0	0	1	0	0	0	4473	1348	47	4	1917	4	DENND5B	12	31595754	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		31595754	102256141	46	38638										
CALCOCO1	0	genome.wustl.edu	37	chr12	54109767	54109767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ccccaagaagggtggctttcTgctggcttgaggctgcaagc	14	11	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	12	54109767	54109767	T	G	SNP	CALCOCO1	ENST00000550804	human	ensembl	69_37n	-1	known	missense	c.1070	p.Q357P	1.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822	66	0	0	54	9	14.29	-	-	-	G	54109767	T	G	54109767	3	3	361	1	0	0	0	0	1	0	0	0	2602	1580	55	5	1033	5	CALCOCO1	12	54109767	Missense_Mutation	SNP	T	TCGA-AQ-A54N-01A-11D-A25Q-09	22514013	54109767	79742128	47	38639										
LRP1	0	genome.wustl.edu	37	chr12	57552402	57552402	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aagattgatggcactgagcgGgagaccatcctgaaggacgg	15	8	0	5			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	12	57552402	57552402	G	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.1779	p.R593	0.999	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	29	0	0	13	19	59.38	-	-	-	T	57552402	G	T	57552402	2	4	361	1	0	0	0	0	0	0	0	1	9017	1219	43	4		4	LRP1	12	57552402	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	3442635	57552402	76299493	48	38640										
SHMT2	0	genome.wustl.edu	37	chr12	57628071	57628071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggactcagaaacaagtcagcGtctggccaacctcaggcaac	10	13	4	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	12	57628071	57628071	G	T	SNP	SHMT2	ENST00000328923	human	ensembl	69_37n	1	known	missense	c.1442	p.R481L	0.918	superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199	42	0	0	6	21	77.78	-	-	-	T	57628071	G	T	57628071	3	4	361	1	0	0	0	0	1	0	0	0	14375	1145	40	3	1488	3	SHMT2	12	57628071	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	75669	57628071	76223824	49	38641										
PIBF1	0	genome.wustl.edu	37	chr13	73409505	73409506	+	Frame_Shift_Ins	INS	-	-	G													0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aatgtatgaacgagaaaacaINSggtaaaaaaaaaaaaatgct							TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	13	73409505	73409506	-	G	INS	PIBF1	ENST00000326291	human	ensembl	69_37n	1	known	frame_shift_ins	c.1222_1223	p.N409fs	1.000:1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535	29	0	0	16	3	15.79	-	-	-	G	73409506	-	G	73409505	7	5	361	1	0	1	1	0	0	0	0	0	11953	202	7	0	1252	0	PIBF1	13	73409505	Frame_Shift_Ins	INS	-	TCGA-AQ-A54N-01A-11D-A25Q-09		73409505	41760373	50	38642										
ABCD4	0	genome.wustl.edu	37	chr14	74766252	74766252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	agagagggaaagatcttaccGtggagttcagaacaatgagc	13	6	2	4			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	14	74766252	74766252	G	C	SNP	ABCD4	ENST00000356924	human	ensembl	69_37n	-1	known	missense	c.284	p.T95R	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD4	HGNC	ENSG00000119688	51	0	0	6	31	83.78	-	-	-	C	74766252	G	C	74766252	3	2	361	1	0	0	0	0	1	0	0	0	63	1159	40	3	1604	3	ABCD4	14	74766252	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		74766252	32583288	51	38643										
TP53	0	genome.wustl.edu	37	chr17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ttgtcctgcttgcttacctcGcttagtgctccctgggggca	11	13	0	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	85	0	0	15	82	84.54	-	-	-	A	7577022	G	A	7577022	4	1	361	1	0	0	0	0	0	1	0	0	16477	1095	38	1	370	1	TP53	17	7577022	Nonsense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		7577022	73618188	52	38644										
KDM6B	0	genome.wustl.edu	37	chr17	7750324	7750324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gcgcaagggttcagcaccccCagagcgccaggtgagcccct	13	16	1	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	17	7750324	7750324	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	69_37n	1	known	missense	c.899	p.P300L	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510	34	0	0	19	26	57.78	-	-	-	T	7750324	C	T	7750324	3	4	361	1	0	0	0	0	1	0	0	0	8191	594	21	4	921	4	KDM6B	17	7750324	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	173302	7750324	73444886	53	38645										
PLEKHM1	0	genome.wustl.edu	37	chr17	43517503	43517503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tgaagtctctctagaggtctGggcgggggaagcatgacact	15	8	3	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	17	43517503	43517503	G	A	SNP	PLEKHM1	ENST00000590991	human	ensembl	69_37n	-1	known	missense	c.128	p.P43L	0.000	NULL	NULL	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	54	0	0	7	3	30	-	-	-	A	43517503	G	A	43517503	3	1	361	1	0	0	0	0	1	0	0	0	12154	1363	47	4		4	PLEKHM1	17	43517503	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	35767179	43517503	37677707	54	38646										
C17orf62	0	genome.wustl.edu	37	chr17	80401650	80401650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ctgaagccaaggccacgggtCctgtgggcggtgcacgggct	17	12	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	17	80401650	80401650	C	T	SNP	C17orf62	ENST00000336995	human	ensembl	69_37n	-1	known	missense	c.349	p.D117N	0.000	NULL	NULL	-	no_errors	C17orf62	HGNC	ENSG00000178927	103	0	0	27	4	12.9	-	-	-	T	80401650	C	T	80401650	3	4	361	1	0	0	0	0	1	0	0	0	1885	870	30	2		2	C17orf62	17	80401650	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	36884147	80401650	793560	55	38647										
ANKRD12	0	genome.wustl.edu	37	chr18	9182463	9182463	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gggttcacaaaaccaattcaGagtgaaaattctgacagtga	9	7	3	4			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	18	9182463	9182463	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	silent	c.33	p.Q11	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	38	0	0	23	14	37.84	-	-	-	A	9182463	G	A	9182463	2	1	361	1	0	0	0	0	0	0	0	1	640	933	33	2		2	ANKRD12	18	9182463	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		9182463	68894785	56	38648										
SERPINB11	0	genome.wustl.edu	37	chr18	61383310	61383310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aaatggtatcaagccaggttGcaaactgtggattttgaaca	10	6	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	18	61383310	61383310	G	A	SNP	SERPINB11	ENST00000382749	human	ensembl	69_37n	1	known	silent	c.399	p.L133	0.532	NULL	NULL	-	pseudogene	SERPINB11	HGNC	ENSG00000206072	50	0	0	28	4	12.5	-	-	-	A	61383310	G	A	61383310	2	1	361	1	0	0	0	0	0	0	0	1	14186	1310	46	4		4	SERPINB11	18	61383310	Silent	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	52200847	61383310	16693938	57	38649										
NOTCH3	0	genome.wustl.edu	37	chr19	15271746	15271747	+	Frame_Shift_Ins	INS	-	-	G													0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	cccgcaggaagcgggcctttINSggggggctgctgtgtgcccc							TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	19	15271746	15271747	-	G	INS	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6693_6692	p.A2233fs	0.009:0.128	pfam_DUF3454_notch,pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	20	0	0	7	35	83.33	-	-	-	G	15271747	-	G	15271746	7	5	361	1	0	1	1	0	0	0	0	0	10622	1799	63	0	276	0	NOTCH3	19	15271746	Frame_Shift_Ins	INS	-	TCGA-AQ-A54N-01A-11D-A25Q-09		15271746	43857237	58	38650										
ZNF285	0	genome.wustl.edu	37	chr19	44896528	44896528	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	taacatgaggttcctgaagtTttccagcatcacatcttggt	8	9	2	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	19	44896528	44896528	T	A	SNP	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	missense	c.118	p.N40Y	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	148	0	0	89	80	47.34	-	-	-	A	44896528	T	A	44896528	3	1	361	1	0	0	0	0	1	0	0	0	17918	1841	64	5	1662	5	ZNF285	19	44896528	Missense_Mutation	SNP	T	TCGA-AQ-A54N-01A-11D-A25Q-09	29624782	44896528	14232455	59	38651										
KLK12	0	genome.wustl.edu	37	chr19	51537845	51537845	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ctccgggagaactcaccaagAacacacaggagcaaaaagat	9	11	1	3			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	19	51537845	51537845	A	G	SNP	KLK12	ENST00000250351	human	ensembl	69_37n	-1	known	silent	c.33	p.V11	0.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	KLK12	HGNC	ENSG00000186474	36	0	0	24	21	46.67	-	-	-	G	51537845	A	G	51537845	2	3	361	1	0	0	0	0	0	0	0	1	8453	233	9	5		5	KLK12	19	51537845	Silent	SNP	A	TCGA-AQ-A54N-01A-11D-A25Q-09	6641317	51537845	7591138	60	38652										
FPR1	0	genome.wustl.edu	37	chr19	52249452	52249452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	caataactcacggattctgaCtgtggctataagggccacca	9	11	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	19	52249452	52249452	C	T	SNP	FPR1	ENST00000304748	human	ensembl	69_37n	-1	known	missense	c.796	p.V266I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051	19	0	0	8	10	55.56	-	-	-	T	52249452	C	T	52249452	3	4	361	1	0	0	0	0	1	0	0	0	6086	565	20	4	260	4	FPR1	19	52249452	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09	711607	52249452	6879531	61	38653										
C20orf112	0	genome.wustl.edu	37	chr20	31040091	31040091	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	gggggctgcaggttgctgctCaaggccccgtacccgcggta	16	13	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	20	31040091	31040091	C	G	SNP	C20orf112	ENST00000359676	human	ensembl	69_37n	-1	known	missense	c.1038	p.L346F	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183	88	0	0	46	8	14.81	-	-	-	G	31040091	C	G	31040091	3	3	361	1	0	0	0	0	1	0	0	0	2101	825	29	2	280	2	C20orf112	20	31040091	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		31040091	31985429	62	38654										
MYH7B	0	genome.wustl.edu	37	chr20	33583233	33583233	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	ggtgaaggagctgagtgagcGgctggaggatgaggaggagg	23	3	0	4			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	20	33583233	33583233	G	C	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.2921	p.R974P	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	79	0	0	20	28	58.33	-	-	-	C	33583233	G	C	33583233	3	2	361	1	0	0	0	0	1	0	0	0	10112	1116	39	3	3023	3	MYH7B	20	33583233	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	2543142	33583233	29442287	63	38655										
FAM3B	0	genome.wustl.edu	37	chr21	42729116	42729116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aaggctgcatacccaaagaaCgaagctgacactgcagggtc	11	11	0	2			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	21	42729116	42729116	C	G	SNP	FAM3B	ENST00000357985	human	ensembl	69_37n	1	known	missense	c.700	p.R234G	0.000	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844	33	0	0	20	14	41.18	-	-	-	G	42729116	C	G	42729116	3	3	361	1	0	0	0	0	1	0	0	0	5603	528	19	3	730	3	FAM3B	21	42729116	Missense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		42729116	5400779	64	38656										
PCNT	0	genome.wustl.edu	37	chr21	47783734	47783734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aacaggacctcacttcagacGacgccctgcattgcagccag	9	15	2	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	21	47783734	47783734	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.2494	p.D832N	0.084	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	52	0	0	11	14	56	-	-	-	A	47783734	G	A	47783734	3	1	361	1	0	0	0	0	1	0	0	0	11663	1058	37	1	2548	1	PCNT	21	47783734	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	5054618	47783734	346161	65	38657										
PLXNB2	0	genome.wustl.edu	37	chr22	50721794	50721794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tgaactggacattgggaggcGaacggcccagtttcccgaag	14	10	0	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	22	50721794	50721794	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.2651	p.S884L	0.014	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	85	0	0	8	37	82.22	-	-	-	A	50721794	G	A	50721794	3	1	361	1	0	0	0	0	1	0	0	0	12198	1059	37	1	2953	1	PLXNB2	22	50721794	Missense_Mutation	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09		50721794	582772	66	38658										
BCOR	0	genome.wustl.edu	37	chrX	39922163	39922163	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	agcctggcaatcctcttcttCgtctgcacacagcacatctg	7	15	4	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	X	39922163	39922163	C	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	nonsense	c.4009	p.E1337*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	164	0	0	67	87	56.49	-	-	-	A	39922163	C	A	39922163	4	1	361	1	0	0	0	0	0	1	0	0	1390	893	31	3	1286	3	BCOR	23	39922163	Nonsense_Mutation	SNP	C	TCGA-AQ-A54N-01A-11D-A25Q-09		39922163	115348397	67	38659										
UBQLN2	0	genome.wustl.edu	37	chrX	56590878	56590878	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	aataatggaaaatccctttgTtcagagcatgctttcgaatc	7	8	1	1			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	X	56590878	56590878	T	G	SNP	UBQLN2	ENST00000338222	human	ensembl	69_37n	1	known	missense	c.572	p.V191G	1.000	smart_STI1_HS-bd	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN2	HGNC	ENSG00000188021	27	0	0	32	11	25.58	-	-	-	G	56590878	T	G	56590878	3	3	361	1	0	0	0	0	1	0	0	0	16994	1725	60	5	574	5	UBQLN2	23	56590878	Missense_Mutation	SNP	T	TCGA-AQ-A54N-01A-11D-A25Q-09	16668715	56590878	98679682	68	38660										
OCRL	0	genome.wustl.edu	37	chrX	128724525	128724525	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.101449275362319	7	0.615452566116777	1.29081971569018	1.02738712065137	1.43834196891192	0.286130536130536	0.930327025915261	0	tatttacactccttcacctaGggatgtgtttgttgccctcc	7	12	1	0			TCGA-AQ-A54N-01A-11D-A25Q-09	TCGA-AQ-A54N-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	292a1557-bc2e-449c-9d24-0ce01b5b2d65	2a07d013-012c-492a-90c2-0fcfe94b1c63	X	128724525	128724525	G	A	SNP	OCRL	ENST00000463271	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	OCRL	HGNC	ENSG00000122126	35	0	0	21	3	12.5	-	-	-	A	128724525	G	A	128724525	1	1	361	0	1	0	0	0	0	0	0	0	10896	1015	35	4		4	OCRL	23	128724525	RNA	SNP	G	TCGA-AQ-A54N-01A-11D-A25Q-09	72133647	128724525	26546035	69	38661										
ARPC5	0	genome.wustl.edu	37	chr1	183596216	183596216	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	atatggtccagttttgcaatGttaatagctgccagtctctc	8	9	1	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	1	183596216	183596216	G	A	SNP	ARPC5	ENST00000462965	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ARPC5	HGNC	ENSG00000162704	41	0	0	26	8	23.53	-	-	-	A	183596216	G	A	183596216	1	1	362	0	1	0	0	0	0	0	0	0	978	1392	48	4		4	ARPC5	1	183596216	RNA	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09		183596216	65654405	1	38662										
KLF11	0	genome.wustl.edu	37	chr2	10192480	10192480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gtgcccggtgtgtgaccgacGtttcatgcgcagtgaccacc	13	13	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	10192480	10192480	G	A	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	1	known	missense	c.1385	p.R462H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	53	0	0	24	7	22.58	-	-	-	A	10192480	G	A	10192480	3	1	362	1	0	0	0	0	1	0	0	0	8392	1145	40	1	1399	1	KLF11	2	10192480	Missense_Mutation	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09		10192480	233006893	2	38663										
LRRTM1	0	genome.wustl.edu	37	chr2	80530774	80530774	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	aggttgtggggcgcctcggtGaggttgagcgcctcgcagta	18	9	0	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	80530774	80530774	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	silent	c.171	p.L57	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	30	0	0	13	10	43.48	-	-	-	A	80530774	G	A	80530774	2	1	362	1	0	0	0	0	0	0	0	1	9105	1277	45	2		2	LRRTM1	2	80530774	Silent	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09	70338294	80530774	162668599	3	38664										
ERBB4	0	genome.wustl.edu	37	chr2	212587168	212587168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	atgtgtactttgcattgaaaTtgtgctccagttgaaaggtg	11	5	0	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	212587168	212587168	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.833	p.N278S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	100	0	0	43	21	32.81	-	-	-	C	212587168	T	C	212587168	3	2	362	1	0	0	0	0	1	0	0	0	5246	1493	52	5	3181	5	ERBB4	2	212587168	Missense_Mutation	SNP	T	TCGA-AQ-A54O-01A-11D-A25Q-09	132056394	212587168	30612205	4	38665										
OXSM	0	genome.wustl.edu	37	chr3	25833071	25833071	+	Frame_Shift_Del	DEL	T	T	-													0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ccctaagattctggtcaataTggcagcaggccaggtcagca							TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	25833071	25833071	T	-	DEL	OXSM	ENST00000280701	human	ensembl	69_37n	1	known	frame_shift_del	c.560	p.M187fs	1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	55	0	0	29	13	30.23	-	-	-	-	25833071	T	-	25833071	7	5	362	1	0	1	0	1	0	0	0	0	11408	1464	51	0	562	0	OXSM	3	25833071	Frame_Shift_Del	DEL	T	TCGA-AQ-A54O-01A-11D-A25Q-09		25833071	172189359	5	38666										
GBE1	0	genome.wustl.edu	37	chr3	81630320	81630320	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gcacatattcatttacctgaTcatggctctctgcataagca	6	11	3	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	81630320	81630320	T	A	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.1442	p.D481V	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	52	0	0	31	9	22.5	-	-	-	A	81630320	T	A	81630320	3	1	362	1	0	0	0	0	1	0	0	0	6320	1435	50	5	690	5	GBE1	3	81630320	Missense_Mutation	SNP	T	TCGA-AQ-A54O-01A-11D-A25Q-09	55797249	81630320	116392110	6	38667										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	69	0	0	22	12	35.29	-	-	-	A	178936091	G	A	178936091	3	1	362	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09	97305771	178936091	19086339	7	38668										
NAAA	0	genome.wustl.edu	37	chr4	76835445	76835446	+	RNA	DEL	TT	TT	-													0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	aatactttcactttgtcttaTtttttaaggtgcagctcttc							TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	4	76835445	76835446	TT	-	DEL	NAAA	ENST00000511606	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	NAAA	HGNC	ENSG00000138744	29	0	0	15	2	11.76	-	-	-	-	76835446	TT	-	76835445	6	5	362	0	1	1	0	1	0	0	0	0	10199	1508	52	0		0	NAAA	4	76835445	RNA	DEL	TT	TCGA-AQ-A54O-01A-11D-A25Q-09		76835445	114318831	8	38669										
LRBA	0	genome.wustl.edu	37	chr4	151199019	151199019	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	tgttacctctggtcgtaagaCagcgccatggcccggattcc	11	13	1	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	4	151199019	151199019	C	A	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.4412	p.C1471F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	87	0	0	46	6	11.54	-	-	-	A	151199019	C	A	151199019	3	1	362	1	0	0	0	0	1	0	0	0	8997	465	17	4	112	4	LRBA	4	151199019	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	74363574	151199019	39955257	9	38670										
C1QTNF2	0	genome.wustl.edu	37	chr5	159781942	159781943	+	Frame_Shift_Ins	INS	-	-	C													0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	aggggagcctttccggaagtINSccctgcgagcaaaggcgcca							TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	5	159781942	159781943	-	C	INS	C1QTNF2	ENST00000393975	human	ensembl	69_37n	-1	known	frame_shift_ins	c.212_211	p.D71fs	0.993:0.994	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861	51	0	0	13	2	13.33	-	-	-	C	159781943	-	C	159781942	7	5	362	1	0	1	1	0	0	0	0	0	1982	1667	58	0	788	0	C1QTNF2	5	159781942	Frame_Shift_Ins	INS	-	TCGA-AQ-A54O-01A-11D-A25Q-09		159781942	21133318	10	38671										
RREB1	0	genome.wustl.edu	37	chr6	7230726	7230726	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	tgcaaggagtgcagcgccgcGttcgcggccaagcgcaactg	15	13	0	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	6	7230726	7230726	G	C	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	silent	c.2394	p.A798	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	9	0	0	0	5	100	-	-	-	C	7230726	G	C	7230726	2	2	362	1	0	0	0	0	0	0	0	1	13765	1132	40	3		3	RREB1	6	7230726	Silent	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09		7230726	163884341	11	38672										
NCOA7	0	genome.wustl.edu	37	chr6	126243859	126243859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ccttcctgcaagggtgcaagGgtatccatggagactggcct	13	11	0	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	6	126243859	126243859	G	T	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	1	known	missense	c.2402	p.G801V	1.000	smart_TLDc	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	132	0	0	34	4	10.53	-	-	-	T	126243859	G	T	126243859	3	4	362	1	0	0	0	0	1	0	0	0	10306	1232	43	4	2448	4	NCOA7	6	126243859	Missense_Mutation	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09	119013133	126243859	44871208	12	38673										
PCLO	0	genome.wustl.edu	37	chr7	82581718	82581718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	tagagataagtttattggtgCttcttccctagctataggaa	9	6	1	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	7	82581718	82581718	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.8551	p.A2851T	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	108	0	0	81	29	26.36	-	-	-	T	82581718	C	T	82581718	3	4	362	1	0	0	0	0	1	0	0	0	11656	797	28	4	6978	4	PCLO	7	82581718	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		82581718	76556945	13	38674										
CA2	0	genome.wustl.edu	37	chr8	86392979	86392979	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gacaactggcgcccagctcaGccactgaagaacaggcaaat	10	13	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	8	86392979	86392979	G	T	SNP	CA2	ENST00000285379	human	ensembl	69_37n	1	known	missense	c.744	p.Q248H	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267	58	0	0	50	6	10.71	-	-	-	T	86392979	G	T	86392979	3	4	362	1	0	0	0	0	1	0	0	0	2541	962	34	4	770	4	CA2	8	86392979	Missense_Mutation	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09		86392979	59971043	14	38675										
ADAMTS14	0	genome.wustl.edu	37	chr10	72511877	72511877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	agttcaccaaatacggctgcCggcgcagacgagaccaccac	10	15	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	10	72511877	72511877	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.2632	p.R878W	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	114	0	0	33	5	13.16	-	-	-	T	72511877	C	T	72511877	3	4	362	1	0	0	0	0	1	0	0	0	259	643	23	1	2702	1	ADAMTS14	10	72511877	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		72511877	63022870	15	38676										
MAML2	0	genome.wustl.edu	37	chr11	95712715	95712715	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gcagttgtgttggatgtgatCattacgtttgatgttctctg	12	5	2	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	11	95712715	95712715	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	missense	c.2868	p.M956I	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	223	0	0	82	11	11.83	-	-	-	T	95712715	C	T	95712715	3	4	362	1	0	0	0	0	1	0	0	0	9277	826	29	2	606	2	MAML2	11	95712715	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		95712715	39293801	16	38677										
OS9	0	genome.wustl.edu	37	chr12	58088018	58088018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	cctgttacccgcaagtctgaCcggcggtgtcgggagcctga	14	13	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	12	58088018	58088018	C	G	SNP	OS9	ENST00000315970	human	ensembl	69_37n	1	known	missense	c.74	p.T25S	0.008	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	53	0	0	21	13	38.24	-	-	-	G	58088018	C	G	58088018	3	3	362	1	0	0	0	0	1	0	0	0	11345	507	18	4	76	4	OS9	12	58088018	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		58088018	75763877	17	38678										
BAZ1A	0	genome.wustl.edu	37	chr14	35269544	35269544	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ttatcttctttttcttttttCttcgcttctagggcatctgc	5	10	6	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	35269544	35269544	C	A	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.1014	p.K338N	0.975	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	25	0	0	12	6	33.33	-	-	-	A	35269544	C	A	35269544	3	1	362	1	0	0	0	0	1	0	0	0	1333	912	32	2	3732	2	BAZ1A	14	35269544	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		35269544	72079996	18	38679										
FLRT2	0	genome.wustl.edu	37	chr14	86088823	86088823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ctgcagtattaaatgggtcaCagaatggctcaaatatatcc	8	8	2	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	86088823	86088823	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	missense	c.965	p.T322I	0.995	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	150	0	0	69	11	13.75	-	-	-	T	86088823	C	T	86088823	3	4	362	1	0	0	0	0	1	0	0	0	5985	478	17	4	967	4	FLRT2	14	86088823	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	50819279	86088823	21260717	19	38680										
EML5	0	genome.wustl.edu	37	chr14	89154694	89154694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gaaagatgtctctccagataCacacatctcctgtggatgtt	8	10	2	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	89154694	89154694	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.2663	p.C888Y	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	126	0	0	34	18	34.62	-	-	-	T	89154694	C	T	89154694	3	4	362	1	0	0	0	0	1	0	0	0	5137	478	17	4	3374	4	EML5	14	89154694	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	3065871	89154694	18194846	20	38681										
OTUD7A	0	genome.wustl.edu	37	chr15	31947336	31947336	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gccagaccaggttctgccccCgtggaccgaacaaagtctga	11	14	2	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	31947336	31947336	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	silent	c.114	p.T38	0.879	superfamily_UBA-like	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	90	0	0	42	14	25	-	-	-	T	31947336	C	T	31947336	2	4	362	1	0	0	0	0	0	0	0	1	11391	639	23	1		1	OTUD7A	15	31947336	Silent	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		31947336	70584056	21	38682										
DMXL2	0	genome.wustl.edu	37	chr15	51780830	51780830	+	Frame_Shift_Del	DEL	A	A	-													0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	atcattgttcctttgaaaagAagctttggcaacctaaatga							TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	51780830	51780830	A	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	frame_shift_del	c.4966	p.S1656fs	0.997	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	56	0	0	10	2	16.67	-	-	-	-	51780830	A	-	51780830	7	5	362	1	0	1	0	1	0	0	0	0	4631	246	9	0	4239	0	DMXL2	15	51780830	Frame_Shift_Del	DEL	A	TCGA-AQ-A54O-01A-11D-A25Q-09	19833494	51780830	50750562	22	38683										
MYO5C	0	genome.wustl.edu	37	chr15	52510875	52510875	+	Frame_Shift_Del	DEL	T	T	-													0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gtatgtatttcattttgggcTtccaaggccctgagaaaggg							TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	52510875	52510875	T	-	DEL	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	frame_shift_del	c.3795	p.A1266fs	0.210	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	53	0	0	13	2	13.33	-	-	-	-	52510875	T	-	52510875	7	5	362	1	0	1	0	1	0	0	0	0	10152	1606	56	0	1473	0	MYO5C	15	52510875	Frame_Shift_Del	DEL	T	TCGA-AQ-A54O-01A-11D-A25Q-09	730045	52510875	50020517	23	38684										
ANP32A	0	genome.wustl.edu	37	chr15	69079873	69079873	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ctctgttatcgcttagttcaAgctaaataaggcagggaaag	10	7	2	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	69079873	69079873	A	C	SNP	ANP32A	ENST00000465139	human	ensembl	69_37n	-1	known	missense	c.206	p.L69R	1.000	NULL	pfam_Leu-rich_rpt,smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32A	HGNC	ENSG00000140350	58	0	0	28	11	28.21	-	-	-	C	69079873	A	C	69079873	3	2	362	1	0	0	0	0	1	0	0	0	704	86	3	5	563	5	ANP32A	15	69079873	Missense_Mutation	SNP	A	TCGA-AQ-A54O-01A-11D-A25Q-09	16568998	69079873	33451519	24	38685										
TOM1L2	0	genome.wustl.edu	37	chr17	17786097	17786097	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gagtagggagcaggaggcggCgaggaataggaaccagcact	18	7	0	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	17	17786097	17786097	C	T	SNP	TOM1L2	ENST00000379504	human	ensembl	69_37n	-1	known	silent	c.582	p.S194	0.025	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662	53	0	0	11	10	47.62	-	-	-	T	17786097	C	T	17786097	2	4	362	1	0	0	0	0	0	0	0	1	16448	755	27	1		1	TOM1L2	17	17786097	Silent	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		17786097	63409113	25	38686										
BLMH	0	genome.wustl.edu	37	chr17	28598355	28598355	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	tcaccaaaagtcagcctctcCgctttattcatgttcttcaa	4	13	6	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	17	28598355	28598355	C	A	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	silent	c.1080	p.A360	0.575	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578	86	0	0	32	8	20	-	-	-	A	28598355	C	A	28598355	2	1	362	1	0	0	0	0	0	0	0	1	1451	639	23	3		3	BLMH	17	28598355	Silent	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	10812258	28598355	52596855	26	38687										
GALNT1	0	genome.wustl.edu	37	chr18	33257560	33257560	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	ttgctttgtctctaggtgtaAaacaaaggtgtatccagata	9	6	1	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	18	33257560	33257560	A	G	SNP	GALNT1	ENST00000269195	human	ensembl	69_37n	1	known	missense	c.320	p.K107R	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429	38	0	0	16	5	23.81	-	-	-	G	33257560	A	G	33257560	3	3	362	1	0	0	0	0	1	0	0	0	6257	14	1	5	330	5	GALNT1	18	33257560	Missense_Mutation	SNP	A	TCGA-AQ-A54O-01A-11D-A25Q-09		33257560	44819688	27	38688										
ODF3L2	0	genome.wustl.edu	37	chr19	474621	474621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	cccccacggctggcacgcacCgttctccagggtggccgtcc	12	19	1	0			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	474621	474621	C	T	SNP	ODF3L2	ENST00000315489	human	ensembl	69_37n	-1	known	missense	c.127	p.G43S	0.398	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	75	0	0	33	7	17.5	-	-	-	T	474621	C	T	474621	3	4	362	1	0	0	0	0	1	0	0	0	10905	666	23	1	758	1	ODF3L2	19	474621	Missense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09		474621	58654362	28	38689										
FBN3	0	genome.wustl.edu	37	chr19	8176940	8176940	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gggatgttgagacaggaggcGtgactgtcacagttgtgtcc	16	7	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	8176940	8176940	G	A	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.3882	p.H1294	0.566	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	61	0	0	25	4	13.79	-	-	-	A	8176940	G	A	8176940	2	1	362	1	0	0	0	0	0	0	0	1	5750	1136	40	1		1	FBN3	19	8176940	Silent	SNP	G	TCGA-AQ-A54O-01A-11D-A25Q-09	7702319	8176940	50952043	29	38690										
HOOK2	0	genome.wustl.edu	37	chr19	12875997	12875997	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	gccagccagaaatgcccctaCatggccacagagccctctct	8	17	1	2			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	12875997	12875997	C	T	SNP	HOOK2	ENST00000589965	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HOOK2	HGNC	ENSG00000095066	34	0	0	11	4	26.67	-	-	-	T	12875997	C	T	12875997	1	4	362	0	1	0	0	0	0	0	0	0	7334	493	17	4		4	HOOK2	19	12875997	RNA	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	4699057	12875997	46252986	30	38691										
CCDC61	0	genome.wustl.edu	37	chr19	46506715	46506715	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.808099831361172	1.23303167420814	0	1.3974358974359	0.142857142857143	0.62934362934363	0	acaagacagggaacttcaaaCagttcaacatcttctgtcat	6	10	5	1			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	46506715	46506715	C	T	SNP	CCDC61	ENST00000263284	human	ensembl	69_37n	1	known	nonsense	c.358	p.Q120*	1.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983	52	0	0	25	10	28.57	-	-	-	T	46506715	C	T	46506715	4	4	362	1	0	0	0	0	0	1	0	0	2859	479	17	4	372	4	CCDC61	19	46506715	Nonsense_Mutation	SNP	C	TCGA-AQ-A54O-01A-11D-A25Q-09	33630718	46506715	12622268	31	38692										
RCAN3	0	genome.wustl.edu	37	chr1	24859683	24859683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ccggtggggtggaagcagagCgaagatgcgatgcctgttat	17	7	0	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	24859683	24859683	C	T	SNP	RCAN3	ENST00000482807	human	ensembl	69_37n	1	known	missense	c.80	p.A27V	0.082	pfam_Calcipressin	pfam_Calcipressin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RCAN3	HGNC	ENSG00000117602	139	0	0	117	17	12.69	-	-	-	T	24859683	C	T	24859683	3	4	363	1	0	0	0	0	1	0	0	0	13253	767	27	1	490	1	RCAN3	1	24859683	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		24859683	224390938	1	38693										
ARHGAP29	0	genome.wustl.edu	37	chr1	94639535	94639535	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	caagccaagctcctcagagtCttctttaggttgaccagttg	9	11	3	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	94639535	94639535	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.3676	p.D1226Y	0.002	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	102	1	0.97	84	13	13.4	-	-	-	A	94639535	C	A	94639535	3	1	363	1	0	0	0	0	1	0	0	0	880	913	32	2	113	2	ARHGAP29	1	94639535	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09	69779852	94639535	154611086	2	38694										
AMPD1	0	genome.wustl.edu	37	chr1	115236070	115236070	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tactcacgtttctcttcagcTgtatgaagtaaaataaaaca	5	8	3	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	115236070	115236070	T	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	splice_site	c.122-2	e2-2	1.000	-	-	-	no_errors	AMPD1	HGNC	ENSG00000116748	161	1	0.62	104	13	11.11	-	-	-	A	115236070	T	A	115236070	5	1	363	1	0	0	0	0	0	0	1	0	585	1594	55	5	2282	5	AMPD1	1	115236070	Splice_Site	SNP	T	TCGA-AR-A0TS-01A-11D-A10Y-09	20596535	115236070	134014551	3	38695										
ASH1L	0	genome.wustl.edu	37	chr1	155313175	155313175	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tccaagggaatgatctcataGagtggcacccgaaatagttc	10	9	1	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	155313175	155313175	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	silent	c.8238	p.L2746	0.818	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	188	0	0	233	36	13.33	-	-	-	A	155313175	G	A	155313175	2	1	363	1	0	0	0	0	0	0	0	1	1045	929	33	2		2	ASH1L	1	155313175	Silent	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	40077105	155313175	93937446	4	38696										
USP21	0	genome.wustl.edu	37	chr1	161134356	161134356	+	Frame_Shift_Del	DEL	T	T	-													0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tgtcggcagaaaactcgaagTaccaaaaagttgacagtaca							TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	161134356	161134356	T	-	DEL	USP21	ENST00000289865	human	ensembl	69_37n	1	known	frame_shift_del	c.1338	p.S446fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	82	0	0	57	17	22.37	-	-	-	-	161134356	T	-	161134356	7	5	363	1	0	1	0	1	0	0	0	0	17150	1635	57	0	1372	0	USP21	1	161134356	Frame_Shift_Del	DEL	T	TCGA-AR-A0TS-01A-11D-A10Y-09	5821181	161134356	88116265	5	38697										
SELL	0	genome.wustl.edu	37	chr1	169673765	169673765	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	atggtccacaggtggtttctTcaatcccagttaagtttgtt	9	8	2	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	169673765	169673765	T	C	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.749	p.E250G	0.000	pirsf_L-selectin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	131	0	0	98	21	17.65	-	-	-	C	169673765	T	C	169673765	3	2	363	1	0	0	0	0	1	0	0	0	14104	1783	62	5	428	5	SELL	1	169673765	Missense_Mutation	SNP	T	TCGA-AR-A0TS-01A-11D-A10Y-09	8539409	169673765	79576856	6	38698										
PIK3C2B	0	genome.wustl.edu	37	chr1	204408104	204408104	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	agggttgtgtttctgcagccAgtctgccaggggccggtcct	15	11	2	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	204408104	204408104	A	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.3475	p.W1159R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	80	0	0	64	16	20	-	-	-	G	204408104	A	G	204408104	3	3	363	1	0	0	0	0	1	0	0	0	11984	188	7	5	1473	5	PIK3C2B	1	204408104	Missense_Mutation	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09	34734339	204408104	44842517	7	38699										
SMC6	0	genome.wustl.edu	37	chr2	17902510	17902510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ctctttctctacacactggcGctttagttcagtaagccgct	7	13	3	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	17902510	17902510	G	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.823	p.R275C	1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	178	0	0	104	34	24.64	-	-	-	A	17902510	G	A	17902510	3	1	363	1	0	0	0	0	1	0	0	0	14876	1087	38	1	2606	1	SMC6	2	17902510	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		17902510	225296863	8	38700										
RAB1A	0	genome.wustl.edu	37	chr2	65315732	65315732	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ggacccattcgctttttaatCtcagctgccatcgtcatgaa	7	12	2	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	65315732	65315732	C	G	SNP	RAB1A	ENST00000409784	human	ensembl	69_37n	-1	known	missense	c.513	p.E171D	1.000	pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1A	HGNC	ENSG00000138069	153	0	0	81	20	19.8	-	-	-	G	65315732	C	G	65315732	3	3	363	1	0	0	0	0	1	0	0	0	12988	912	32	2	108	2	RAB1A	2	65315732	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09	47413222	65315732	177883641	9	38701										
COL6A5	0	genome.wustl.edu	37	chr3	130098667	130098667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gatgaggtgcatgatgctgcGctgaaccttcgactggagga	15	8	0	3			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	130098667	130098667	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.1074	p.A358	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	91	0	0	49	13	20.97	-	-	-	A	130098667	G	A	130098667	2	1	363	1	0	0	0	0	0	0	0	1	3732	1074	38	1		1	COL6A5	3	130098667	Silent	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		130098667	67923763	10	38702										
HPS3	0	genome.wustl.edu	37	chr3	148875176	148875176	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ataagactgtcaaaacccagAgctgcattcaccttctcagt	6	12	3	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	148875176	148875176	A	C	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.1549	p.S517R	1.000	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	163	0	0	121	16	11.68	-	-	-	C	148875176	A	C	148875176	3	2	363	1	0	0	0	0	1	0	0	0	7391	304	11	5	1583	5	HPS3	3	148875176	Missense_Mutation	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09	18776509	148875176	49147254	11	38703										
CENPE	0	genome.wustl.edu	37	chr4	104098112	104098112	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tatgtgtttttgttgttataTttgttggtatattaaattga	8	0	0	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	104098112	104098112	T	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.1334	p.N445T	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	463	0	0	266	62	18.9	-	-	-	G	104098112	T	G	104098112	3	3	363	1	0	0	0	0	1	0	0	0	3259	1493	52	5	6915	5	CENPE	4	104098112	Missense_Mutation	SNP	T	TCGA-AR-A0TS-01A-11D-A10Y-09		104098112	87056164	12	38704										
DCHS2	0	genome.wustl.edu	37	chr4	155287566	155287566	+	Frame_Shift_Del	DEL	G	G	-													0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	cacgtcctccaggtccacacGaacaaaggcttgggcactta							TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	155287566	155287566	G	-	DEL	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	frame_shift_del	c.490	p.R164fs	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	92	0	0	103	22	17.05	-	-	-	-	155287566	G	-	155287566	7	5	363	1	0	1	0	1	0	0	0	0	4319	1058	37	0	8440	0	DCHS2	4	155287566	Frame_Shift_Del	DEL	G	TCGA-AR-A0TS-01A-11D-A10Y-09	51189454	155287566	35866710	13	38705										
SUB1	0	genome.wustl.edu	37	chr5	32601185	32601185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ttgatgatgcagtaagaaaaCtgtaaaattcgagccatata	8	5	0	3			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	5	32601185	32601185	C	T	SNP	SUB1	ENST00000265073	human	ensembl	69_37n	1	known	silent	c.379	p.L127	1.000	superfamily_ssDNA-bd_transcriptional_reg	pfam_PC4,superfamily_ssDNA-bd_transcriptional_reg	-	no_errors	SUB1	HGNC	ENSG00000113387	222	0	0	153	24	13.56	-	-	-	T	32601185	C	T	32601185	2	4	363	1	0	0	0	0	0	0	0	1	15453	564	20	4		4	SUB1	5	32601185	Silent	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		32601185	148314075	14	38706										
UBR2	0	genome.wustl.edu	37	chr6	42629951	42629951	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	atccattattcatgcaccctGatctgtcttgtggaacacac	6	12	3	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	42629951	42629951	G	A	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.3472	p.D1158N	0.994	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	226	0	0	213	33	13.41	-	-	-	A	42629951	G	A	42629951	3	1	363	1	0	0	0	0	1	0	0	0	16999	1290	45	2	3740	2	UBR2	6	42629951	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		42629951	128485116	15	38707										
SERINC1	0	genome.wustl.edu	37	chr6	122775305	122775305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ggatttcttaccagttgtaaAagttccttctggaatgaaga	9	6	2	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	122775305	122775305	A	G	SNP	SERINC1	ENST00000339697	human	ensembl	69_37n	-1	known	missense	c.442	p.F148L	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897	92	0	0	76	11	12.64	-	-	-	G	122775305	A	G	122775305	3	3	363	1	0	0	0	0	1	0	0	0	14167	14	1	5	947	5	SERINC1	6	122775305	Missense_Mutation	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09	80145354	122775305	48339762	16	38708										
CDCA2	0	genome.wustl.edu	37	chr8	25365051	25365051	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tggcacctcccgtctcagatCcagaaaacagccagggccct	9	16	1	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	25365051	25365051	C	G	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.2869	p.P957A	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	116	0	0	59	9	13.24	-	-	-	G	25365051	C	G	25365051	3	3	363	1	0	0	0	0	1	0	0	0	3115	855	30	2	2923	2	CDCA2	8	25365051	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		25365051	120998971	17	38709										
RGS20	0	genome.wustl.edu	37	chr8	54791869	54791869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ccgccgccccgaagctgttcGgcctcctttctagcccgctt	9	19	1	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	54791869	54791869	G	A	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	1	known	missense	c.217	p.G73S	0.001	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	51	0	0	21	7	25	-	-	-	A	54791869	G	A	54791869	3	1	363	1	0	0	0	0	1	0	0	0	13387	1116	39	1	223	1	RGS20	8	54791869	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	29426818	54791869	91572153	18	38710										
RBM12B	0	genome.wustl.edu	37	chr8	94748065	94748065	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tatggcatcaccattatttcGgccatcatgatgttttaaga	7	8	2	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	94748065	94748065	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	nonsense	c.574	p.R192*	0.998	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	162	0	0	124	17	12.06	-	-	-	A	94748065	G	A	94748065	4	1	363	1	0	0	0	0	0	1	0	0	13197	1124	39	1	2435	1	RBM12B	8	94748065	Nonsense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	39956196	94748065	51615957	19	38711										
C8orf31	0	genome.wustl.edu	37	chr8	144126108	144126108	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	cccagggactcactgccaaaGacgctcactttctgggagac	10	14	3	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	144126108	144126108	G	C	SNP	C8orf31	ENST00000395172	human	ensembl	69_37n	1	known	missense	c.229	p.D77H	0.000	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335	33	0	0	72	11	13.25	-	-	-	C	144126108	G	C	144126108	3	2	363	1	0	0	0	0	1	0	0	0	2444	942	33	2	239	2	C8orf31	8	144126108	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	49378043	144126108	2237914	20	38712										
CACNA1B	0	genome.wustl.edu	37	chr9	140970313	140970313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	atgatgacaccagcatcaacCgccacaacaacttccggacg	7	15	1	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	9	140970313	140970313	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.4903	p.R1635C	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	116	1	0.85	56	19	25.33	-	-	-	T	140970313	C	T	140970313	3	4	363	1	0	0	0	0	1	0	0	0	2564	652	23	1	5034	1	CACNA1B	9	140970313	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		140970313	243118	21	38713										
AKR1C3	0	genome.wustl.edu	37	chr10	5141532	5141532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tccacaggccatggagaagtGtaaggatgcaggattggcca	14	8	0	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	10	5141532	5141532	G	T	SNP	AKR1C3	ENST00000380554	human	ensembl	69_37n	1	known	missense	c.461	p.C154F	0.999	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C3	HGNC	ENSG00000196139	226	0	0	175	49	21.88	-	-	-	T	5141532	G	T	5141532	3	4	363	1	0	0	0	0	1	0	0	0	471	1377	48	4	479	4	AKR1C3	10	5141532	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		5141532	130393215	22	38714										
SYT9	0	genome.wustl.edu	37	chr11	7335088	7335088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tctcgtcatgacttaatcggCcaagtggtggtggatcactt	11	9	3	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	11	7335088	7335088	C	A	SNP	SYT9	ENST00000524820	human	ensembl	69_37n	1	known	missense	c.817	p.P273T	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT9	HGNC	ENSG00000170743	183	0	0	146	27	15.61	-	-	-	A	7335088	C	A	7335088	3	1	363	1	0	0	0	0	1	0	0	0	15573	726	26	4	970	4	SYT9	11	7335088	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		7335088	127671428	23	38715										
SLITRK1	0	genome.wustl.edu	37	chr13	84454496	84454496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gctgtggatcttgttatctcGtaggaaaagctcctgcacgt	11	9	2	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	13	84454496	84454496	G	C	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.1147	p.R383G	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	80	0	0	91	14	13.33	-	-	-	C	84454496	G	C	84454496	3	2	363	1	0	0	0	0	1	0	0	0	14831	1153	40	3	947	3	SLITRK1	13	84454496	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		84454496	30715382	24	38716										
HSPA2	0	genome.wustl.edu	37	chr14	65007625	65007625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gcaccacctattcgtgcgtcGgggtcttccaacatggcaag	11	13	1	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	14	65007625	65007625	G	T	SNP	HSPA2	ENST00000247207	human	ensembl	69_37n	1	known	missense	c.58	p.G20W	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	38	0	0	30	5	14.29	-	-	-	T	65007625	G	T	65007625	3	4	363	1	0	0	0	0	1	0	0	0	7464	1116	39	3	60	3	HSPA2	14	65007625	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		65007625	42341915	25	38717										
PIGQ	0	genome.wustl.edu	37	chr16	625917	625917	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ctccggcaccggctggagcaCctcacgctaatcttcagtac	9	16	3	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	625917	625917	C	A	SNP	PIGQ	ENST00000026218	human	ensembl	69_37n	1	known	missense	c.768	p.H256Q	0.998	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	45	0	0	52	9	14.75	-	-	-	A	625917	C	A	625917	3	1	363	1	0	0	0	0	1	0	0	0	11970	506	18	4	774	4	PIGQ	16	625917	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		625917	89728836	26	38718										
TSC2	0	genome.wustl.edu	37	chr16	2136343	2136343	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gacgtgtgtggtgaggacggCcagttcacctactgctggca	15	10	1	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	2136343	2136343	C	A	SNP	TSC2	ENST00000569110	human	ensembl	69_37n	1	novel	missense	c.994	p.P332T	0.994	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSC2	HGNC	ENSG00000103197	43	0	0	28	9	24.32	-	-	-	A	2136343	C	A	2136343	3	1	363	1	0	0	0	0	1	0	0	0	16702	726	26	4	4954	4	TSC2	16	2136343	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09	1510426	2136343	88218410	27	38719										
ERI2	0	genome.wustl.edu	37	chr16	20812611	20812611	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	aaataatgttcttctgttgcTgaatcttatgaatccattta	5	6	3	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	20812611	20812611	T	A	SNP	ERI2	ENST00000357967	human	ensembl	69_37n	-1	known	missense	c.374	p.Q125L	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Znf_GRF,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI2	HGNC	ENSG00000196678	120	0	0	59	12	16.9	-	-	-	A	20812611	T	A	20812611	3	1	363	1	0	0	0	0	1	0	0	0	5265	1580	55	5	1988	5	ERI2	16	20812611	Missense_Mutation	SNP	T	TCGA-AR-A0TS-01A-11D-A10Y-09	18676268	20812611	69542142	28	38720										
ERN2	0	genome.wustl.edu	37	chr16	23711935	23711935	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gctcctccggctggcccccgAgtgcagggactgggcatcct	14	16	0	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	23711935	23711935	A	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.1594	p.S532T	0.002	NULL	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	79	0	0	49	10	16.95	-	-	-	T	23711935	A	T	23711935	3	4	363	1	0	0	0	0	1	0	0	0	5275	304	11	5	1370	5	ERN2	16	23711935	Missense_Mutation	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09	2899324	23711935	66642818	29	38721										
CHD9	0	genome.wustl.edu	37	chr16	53338403	53338403	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ttgctcccactctcgatcagGctctagttcttcttcatctt	5	14	7	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	53338403	53338403	G	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.6485	p.G2162A	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	446	0	0	292	42	12.57	-	-	-	C	53338403	G	C	53338403	3	2	363	1	0	0	0	0	1	0	0	0	3361	1203	42	4	6603	4	CHD9	16	53338403	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	29626468	53338403	37016350	30	38722										
WWP2	0	genome.wustl.edu	37	chr16	69922069	69922069	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tctctccctgccccagccacAccggctgaaggagaggaacc	10	17	1	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	69922069	69922069	A	C	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	silent	c.831	p.T277	0.016	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	44	0	0	51	11	17.46	-	-	-	C	69922069	A	C	69922069	2	2	363	1	0	0	0	0	0	0	0	1	17513	146	6	5		5	WWP2	16	69922069	Silent	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09	16583666	69922069	20432684	31	38723										
AARS	0	genome.wustl.edu	37	chr16	70296374	70296374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gcctgtggacacctcttccaCgaacatcttctccctgcgca	7	17	3	0			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	70296374	70296374	C	A	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1546	p.V516L	0.999	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	91	0	0	101	20	16.53	-	-	-	A	70296374	C	A	70296374	3	1	363	1	0	0	0	0	1	0	0	0	19	536	19	3	1400	3	AARS	16	70296374	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09	374305	70296374	20058379	32	38724										
TP53	0	genome.wustl.edu	37	chr17	7578257	7578257	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ctccacacgcaaatttccttCcactcggataagatgctgag	7	13	0	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	17	7578257	7578257	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.592	p.E198*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	156	0	0	119	36	23.23	-	-	-	A	7578257	C	A	7578257	4	1	363	1	0	0	0	0	0	1	0	0	16477	864	30	2	702	2	TP53	17	7578257	Nonsense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		7578257	73616953	33	38725										
LIPG	0	genome.wustl.edu	37	chr18	47093896	47093896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	acgccaatgtagttgtggttGactggctccccctggcccac	11	14	0	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	18	47093896	47093896	G	C	SNP	LIPG	ENST00000261292	human	ensembl	69_37n	1	known	missense	c.364	p.D122H	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep,pfscan_LipOase_LH2	-	no_errors	LIPG	HGNC	ENSG00000101670	94	0	0	73	11	13.1	-	-	-	C	47093896	G	C	47093896	3	2	363	1	0	0	0	0	1	0	0	0	8879	1290	45	2	374	2	LIPG	18	47093896	Missense_Mutation	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		47093896	30983352	34	38726										
ZNF473	0	genome.wustl.edu	37	chr19	50548416	50548416	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	tagggagaaacccactgtccAtcaagagtgtgagcaaggtt	12	8	1	3			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	50548416	50548416	A	T	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	1	known	missense	c.716	p.H239L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	72	0	0	58	19	24.36	-	-	-	T	50548416	A	T	50548416	3	4	363	1	0	0	0	0	1	0	0	0	18027	217	8	5	730	5	ZNF473	19	50548416	Missense_Mutation	SNP	A	TCGA-AR-A0TS-01A-11D-A10Y-09		50548416	8580567	35	38727										
NCR1	0	genome.wustl.edu	37	chr19	55417945	55417945	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gttccaaaggaaaagcaagtGaccatctgttgccagggaaa	11	8	1	1			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	55417945	55417945	G	A	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	1	known	silent	c.135	p.V45	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	76	0	0	59	9	13.24	-	-	-	A	55417945	G	A	55417945	2	1	363	1	0	0	0	0	0	0	0	1	10309	1277	45	2		2	NCR1	19	55417945	Silent	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09	4869529	55417945	3711038	36	38728										
ADAM33	0	genome.wustl.edu	37	chr20	3649962	3649962	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	ctaccttgggggtcaggcgaGactgctggcagaggcttctc	15	11	2	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	20	3649962	3649962	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	silent	c.2388	p.V796	0.009	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	143	0	0	135	18	11.76	-	-	-	C	3649962	G	C	3649962	2	2	363	1	0	0	0	0	0	0	0	1	250	929	33	2		2	ADAM33	20	3649962	Silent	SNP	G	TCGA-AR-A0TS-01A-11D-A10Y-09		3649962	59375558	37	38729										
CDKL5	0	genome.wustl.edu	37	chrX	18631363	18631363	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.184210526315789	7	0.0359118270973105	2.83660130718954	3.93650793650794	2.06666666666667	1	1	5	gagagcagttctggaaccaaCcactcaaaaagacaaccagc	8	12	2	2			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	X	18631363	18631363	C	A	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.2244	p.N748K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	246	0	0	155	28	15.3	-	-	-	A	18631363	C	A	18631363	3	1	363	1	0	0	0	0	1	0	0	0	3186	506	18	4	2298	4	CDKL5	23	18631363	Missense_Mutation	SNP	C	TCGA-AR-A0TS-01A-11D-A10Y-09		18631363	136639197	38	38730										
EIF3I	0	genome.wustl.edu	37	chr1	32691906	32691906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tgagcttttttgacctgcggGatccgagccagattggtgag	14	8	0	4			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32691906	32691906	G	A	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	missense	c.385	p.D129N	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	28	0	0	28	33	53.23	-	-	-	A	32691906	G	A	32691906	3	1	364	1	0	0	0	0	1	0	0	0	5056	1174	41	2	403	2	EIF3I	1	32691906	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		32691906	216558715	1	38731										
BSDC1	0	genome.wustl.edu	37	chr1	32849538	32849538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ggcaaaggtgtctgagatcaCccctaggaagtcagataacc	11	10	3	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32849538	32849538	C	T	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	missense	c.301	p.V101M	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	60	0	0	47	39	45.35	-	-	-	T	32849538	C	T	32849538	3	4	364	1	0	0	0	0	1	0	0	0	1536	507	18	4	1074	4	BSDC1	1	32849538	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	157632	32849538	216401083	2	38732										
EPHA10	0	genome.wustl.edu	37	chr1	38185168	38185168	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gctgtggatctgggagaaccTgggccgctcacctgggtcct	15	12	2	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	38185168	38185168	T	G	SNP	EPHA10	ENST00000427468	human	ensembl	69_37n	-1	known	silent	c.2674	p.R892	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317	13	0	0	16	6	27.27	-	-	-	G	38185168	T	G	38185168	2	3	364	1	0	0	0	0	0	0	0	1	5203	1579	55	5		5	EPHA10	1	38185168	Silent	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09	5335630	38185168	211065453	3	38733										
CAP1	0	genome.wustl.edu	37	chr1	40525103	40525103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctcatacctctgacatgcacCgtgggtatgcagacagtcct	9	13	2	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	40525103	40525103	C	G	SNP	CAP1	ENST00000372792	human	ensembl	69_37n	1	known	missense	c.85	p.R29G	0.709	pfam_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236	41	0	0	14	11	44	-	-	-	G	40525103	C	G	40525103	3	3	364	1	0	0	0	0	1	0	0	0	2644	652	23	3	87	3	CAP1	1	40525103	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	2339935	40525103	208725518	4	38734										
SSBP3	0	genome.wustl.edu	37	chr1	54722839	54722839	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gggggcctggggccgcctgcGtatcgcggtgacataaaagg	18	10	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	54722839	54722839	G	A	SNP	SSBP3	ENST00000371320	human	ensembl	69_37n	-1	known	silent	c.468	p.Y156	0.983	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216	19	0	0	28	14	33.33	-	-	-	A	54722839	G	A	54722839	2	1	364	1	0	0	0	0	0	0	0	1	15272	1140	40	1		1	SSBP3	1	54722839	Silent	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	14197736	54722839	194527782	5	38735										
TPR	0	genome.wustl.edu	37	chr1	186321122	186321122	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ggttacctgaattgtttgcaGattagttagcagtaagtttt	10	4	0	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	186321122	186321122	G	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.2455	p.L819M	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	257	0	0	270	137	33.58	-	-	-	T	186321122	G	T	186321122	3	4	364	1	0	0	0	0	1	0	0	0	16512	933	33	2	4768	2	TPR	1	186321122	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	131598283	186321122	62929499	6	38736										
IKBKE	0	genome.wustl.edu	37	chr1	206650162	206650162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tcatcccctttggtgggccaCggcggaacaaggagatcatg	13	11	2	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	206650162	206650162	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.682	p.R228W	0.723	pfam_Prot_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	20	0	0	17	5	21.74	-	-	-	T	206650162	C	T	206650162	3	4	364	1	0	0	0	0	1	0	0	0	7666	527	19	1	700	1	IKBKE	1	206650162	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	20329040	206650162	42600459	7	38737										
USH2A	0	genome.wustl.edu	37	chr1	215953193	215953193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttgttttctcacctgtgaccGtatgctgtctcctgtcagtg	9	11	3	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	215953193	215953193	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10931	p.T3644M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	64	0	0	25	20	44.44	-	-	-	A	215953193	G	A	215953193	3	1	364	1	0	0	0	0	1	0	0	0	17133	1145	40	1	4749	1	USH2A	1	215953193	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	9303031	215953193	33297428	8	38738										
AKT3	0	genome.wustl.edu	37	chr1	243727042	243727042	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctctggtgccagatattctgGagtgccacagaatgtcttca	10	10	4	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	243727042	243727042	G	C	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	missense	c.928	p.P310A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	145	0	0	65	27	29.35	-	-	-	C	243727042	G	C	243727042	3	2	364	1	0	0	0	0	1	0	0	0	481	1174	41	2	579	2	AKT3	1	243727042	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	27773849	243727042	5523579	9	38739										
ADD2	0	genome.wustl.edu	37	chr2	70931513	70931513	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	catgaagtccgcgatctgtcGcagggcccagatgttggagg	15	10	1	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	70931513	70931513	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	nonsense	c.262	p.R88*	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	22	0	0	7	12	63.16	-	-	-	A	70931513	G	A	70931513	4	1	364	1	0	0	0	0	0	1	0	0	305	1095	38	1	2151	1	ADD2	2	70931513	Nonsense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		70931513	172267860	10	38740										
SCN1A	0	genome.wustl.edu	37	chr2	166848260	166848260	+	Frame_Shift_Del	DEL	G	G	-													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gctggagtttgtttggttgtGgcagattgagaggcggttca							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	166848260	166848260	G	-	DEL	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	frame_shift_del	c.5525	p.P1842fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	66	0	0	17	2	10.53	-	-	-	-	166848260	G	-	166848260	7	5	364	1	0	1	0	1	0	0	0	0	14002	1348	47	0	508	0	SCN1A	2	166848260	Frame_Shift_Del	DEL	G	TCGA-AR-A0TU-01A-31D-A10G-09	95916747	166848260	76351113	11	38741										
ALS2	0	genome.wustl.edu	37	chr2	202590162	202590162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttcattgccttgtttgggatTctgtattctccatacctgcc	7	11	3	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	202590162	202590162	T	C	SNP	ALS2	ENST00000439495	human	ensembl	69_37n	-1	known	missense	c.1225	p.N409D	1.000	pfam_MORN,smart_MORN	pfam_MORN,pfam_DH-domain,superfamily_DH-domain,smart_MORN,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALS2	HGNC	ENSG00000003393	129	0	0	37	62	62.63	-	-	-	C	202590162	T	C	202590162	3	2	364	1	0	0	0	0	1	0	0	0	550	1780	62	5	1769	5	ALS2	2	202590162	Missense_Mutation	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09	35741902	202590162	40609211	12	38742										
NKTR	0	genome.wustl.edu	37	chr3	42678448	42678448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ataatggatattattcagacCttagtacagcaagacactct	6	8	2	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	42678448	42678448	C	A	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.1252	p.L418I	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	52	0	0	55	23	29.49	-	-	-	A	42678448	C	A	42678448	3	1	364	1	0	0	0	0	1	0	0	0	10520	681	24	4	1298	4	NKTR	3	42678448	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		42678448	155343982	13	38743										
ROBO1	0	genome.wustl.edu	37	chr3	78734951	78734951	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cttccagcaacatttaaagtCtggcagatgtaataaccaac	6	10	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	78734951	78734951	C	A	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.1287	p.Q429H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	48	0	0	32	35	52.24	-	-	-	A	78734951	C	A	78734951	3	1	364	1	0	0	0	0	1	0	0	0	13599	912	32	2	3756	2	ROBO1	3	78734951	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	36056503	78734951	119287479	14	38744										
PVRL3	0	genome.wustl.edu	37	chr3	110852796	110852796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tagatgttcttcaacaagatGagcttgattcttacccagac	7	9	3	5			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	110852796	110852796	G	A	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	1	known	missense	c.1384	p.E462K	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	56	0	0	23	23	50	-	-	-	A	110852796	G	A	110852796	3	1	364	1	0	0	0	0	1	0	0	0	12924	1291	45	2	1406	2	PVRL3	3	110852796	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	32117845	110852796	87169634	15	38745										
PDIA5	0	genome.wustl.edu	37	chr3	122811242	122811242	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctcaggttactgtccacagtGgcccaggcggtgaaaggaca	13	11	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	122811242	122811242	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	silent	c.210	p.V70	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	39	0	0	12	30	71.43	-	-	-	A	122811242	G	A	122811242	2	1	364	1	0	0	0	0	0	0	0	1	11744	1335	47	4		4	PDIA5	3	122811242	Silent	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	11958446	122811242	75211188	16	38746										
PRKCI	0	genome.wustl.edu	37	chr3	170015134	170015134	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtcatcctcaaacaggatttGctgatattcagggacacccg	9	11	3	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	170015134	170015134	G	C	SNP	PRKCI	ENST00000295797	human	ensembl	69_37n	1	known	missense	c.1540	p.A514P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558	71	0	0	27	76	73.79	-	-	-	C	170015134	G	C	170015134	3	2	364	1	0	0	0	0	1	0	0	0	12595	1319	46	4	1602	4	PRKCI	3	170015134	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	47203892	170015134	28007296	17	38747										
KIAA0232	0	genome.wustl.edu	37	chr4	6863899	6863899	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttgggagtgctgttcatccaGctccggtgatgctgatgggg	16	8	1	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	6863899	6863899	G	C	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.1790	p.S597T	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	67	0	0	5	12	70.59	-	-	-	C	6863899	G	C	6863899	3	2	364	1	0	0	0	0	1	0	0	0	8215	971	34	4	1808	4	KIAA0232	4	6863899	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		6863899	184290377	18	38748										
SCFD2	0	genome.wustl.edu	37	chr4	54231620	54231620	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtcaaggcaaagtggggagcAacaggggcaagcaataacgg	16	7	1	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	54231620	54231620	A	T	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	silent	c.489	p.V163	0.002	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	18	0	0	45	18	28.12	-	-	-	T	54231620	A	T	54231620	2	4	364	1	0	0	0	0	0	0	0	1	13977	117	5	5		5	SCFD2	4	54231620	Silent	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	47367721	54231620	136922656	19	38749										
SPEF2	0	genome.wustl.edu	37	chr5	35727923	35727923	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	atgtgaatgaaccagttcctGaggtatggccatttagaatc	10	7	0	4			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	35727923	35727923	G	C	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	missense	c.3061	p.E1021Q	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	43	0	0	29	34	53.97	-	-	-	C	35727923	G	C	35727923	3	2	364	1	0	0	0	0	1	0	0	0	15126	1291	45	2	3164	2	SPEF2	5	35727923	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		35727923	145187337	20	38750										
MAN2A1	0	genome.wustl.edu	37	chr5	109200756	109200756	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ggtgggcaatgggcactccaAtgaggcagccttgatcctcc	13	12	0	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	109200756	109200756	A	G	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	missense	c.3191	p.N1064S	0.602	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	77	0	0	9	15	62.5	-	-	-	G	109200756	A	G	109200756	3	3	364	1	0	0	0	0	1	0	0	0	9285	101	4	5	3273	5	MAN2A1	5	109200756	Missense_Mutation	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	73472833	109200756	71714504	21	38751										
SLC23A1	0	genome.wustl.edu	37	chr5	138718947	138718947	+	Frame_Shift_Del	DEL	G	G	-													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cctcctgggccctcatctttGgggcacaggtttgagcagtt							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	138718947	138718947	G	-	DEL	SLC23A1	ENST00000508270	human	ensembl	69_37n	-1	putative	frame_shift_del	c.218	p.P73fs	0.076	NULL	pfam_Xant/urac/vitC	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SLC23A1	HGNC	ENSG00000170482	9	0	0	4	2	33.33	-	-	-	-	138718947	G	-	138718947	7	5	364	1	0	1	0	1	0	0	0	0	14551	1363	47	0		0	SLC23A1	5	138718947	Frame_Shift_Del	DEL	G	TCGA-AR-A0TU-01A-31D-A10G-09	29518191	138718947	42196313	22	38752										
ZNF300	0	genome.wustl.edu	37	chr5	150275563	150275564	+	Frame_Shift_Ins	INS	-	-	C													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	acagaaggctttcccacattINScggtacactcatacggcttc							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	150275563	150275564	-	C	INS	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.E429fs	0.885:0.871	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	56	0	0	16	2	11.11	-	-	-	C	150275564	-	C	150275563	7	5	364	1	0	1	1	0	0	0	0	0	17927	1783	62	0	580	0	ZNF300	5	150275563	Frame_Shift_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09	11556616	150275563	30639697	23	38753										
DEFB113	0	genome.wustl.edu	37	chr6	49937333	49937333	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtcagaaaaatacaaagtatCttcattgctgatgcagttac	7	7	3	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	49937333	49937333	C	G	SNP	DEFB113	ENST00000398718	human	ensembl	69_37n	-1	known	missense	c.6	p.K2N	0.984	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642	150	0	0	15	21	58.33	-	-	-	G	49937333	C	G	49937333	3	3	364	1	0	0	0	0	1	0	0	0	4437	912	32	2	242	2	DEFB113	6	49937333	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		49937333	121177734	24	38754										
VNN1	0	genome.wustl.edu	37	chr6	133032939	133032939	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtccctgttgaagttccagcCataaatagcatcttctggag	9	10	2	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	133032939	133032939	C	A	SNP	VNN1	ENST00000367928	human	ensembl	69_37n	-1	known	missense	c.250	p.G84C	0.989	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299	118	0	0	100	12	10.71	-	-	-	A	133032939	C	A	133032939	3	1	364	1	0	0	0	0	1	0	0	0	17279	594	21	4	1315	4	VNN1	6	133032939	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	83095606	133032939	38082128	25	38755										
BCLAF1	0	genome.wustl.edu	37	chr6	136596775	136596776	+	Frame_Shift_Ins	INS	-	-	T													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aagatggatcggaattcttgINSctccttcttgacagaatgga							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	136596775	136596776	-	T	INS	BCLAF1	ENST00000531224	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1747_1746	p.Q582fs	1.000:0.999	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	108	0	0	46	6	11.54	-	-	-	T	136596776	-	T	136596775	7	5	364	1	0	1	1	0	0	0	0	0	1387	1328	46	0	1047	0	BCLAF1	6	136596775	Frame_Shift_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09	3563836	136596775	34518292	26	38756										
CNKSR3	0	genome.wustl.edu	37	chr6	154763259	154763259	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cagggccttggcggcgccgaTgagctccaccaccgaggtca	14	15	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	154763259	154763259	T	A	SNP	CNKSR3	ENST00000367213	human	ensembl	69_37n	-1	known	missense	c.382	p.I128F	1.000	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	-	no_errors	CNKSR3	HGNC	ENSG00000153721	19	0	0	21	20	48.78	-	-	-	A	154763259	T	A	154763259	3	1	364	1	0	0	0	0	1	0	0	0	3638	1464	51	5	1329	5	CNKSR3	6	154763259	Missense_Mutation	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09	18166484	154763259	16351808	27	38757										
NOX3	0	genome.wustl.edu	37	chr6	155750119	155750119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	accaagatgtactgccctggCgccattttaaagccacgctt	8	13	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	155750119	155750119	C	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.954	p.A318	0.147	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	19	0	0	14	9	39.13	-	-	-	T	155750119	C	T	155750119	2	4	364	1	0	0	0	0	0	0	0	1	10629	755	27	1		1	NOX3	6	155750119	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	986860	155750119	15364948	28	38758										
ETV1	0	genome.wustl.edu	37	chr7	13946060	13946060	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	atctattaaactaacctcttCaggctcaatcagtttaaatt	3	9	5	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	13946060	13946060	C	G	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369Q	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	77	0	0	13	23	63.89	-	-	-	G	13946060	C	G	13946060	3	3	364	1	0	0	0	0	1	0	0	0	5314	835	29	2	340	2	ETV1	7	13946060	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		13946060	145192603	29	38759										
DYNC1I1	0	genome.wustl.edu	37	chr7	95726876	95726876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctaacagagctgatagcgagGaggaaggcactgttgagtta	14	6	0	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	95726876	95726876	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	missense	c.1909	p.E637K	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	44	0	0	7	9	56.25	-	-	-	A	95726876	G	A	95726876	3	1	364	1	0	0	0	0	1	0	0	0	4877	1175	41	2	1971	2	DYNC1I1	7	95726876	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	81780816	95726876	63411787	30	38760										
MET	0	genome.wustl.edu	37	chr7	116340214	116340216	+	In_Frame_Del	DEL	GAT	GAT	-													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttctgccgaaccaatggatcGatctgccatgtgtgcattcc							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340214	116340216	GAT	-	DEL	MET	ENST00000318493	human	ensembl	69_37n	1	known	in_frame_del	c.1076_1078	p.RS359in_frame_delP	1.000:1.000:1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0	16	6	27.27	-	-	-	-	116340216	GAT	-	116340214	7	5	364	1	0	1	0	1	0	0	0	0	9556	1058	37	0	1078	0	MET	7	116340214	In_Frame_Del	DEL	GAT	TCGA-AR-A0TU-01A-31D-A10G-09	20613338	116340214	42798449	31	38761	316	3								
MET	0	genome.wustl.edu	37	chr7	116340219	116340221	+	In_Frame_Del	DEL	GCC	GCC	-													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ccgaaccaatggatcgatctGccatgtgtgcattccctatc							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340219	116340221	GCC	-	DEL	MET	ENST00000318493	human	ensembl	69_37n	1	known	in_frame_del	c.1081_1083	p.A361in_frame_del	1.000:1.000:0.022	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0	16	6	25	-	-	-	-	116340221	GCC	-	116340219	7	5	364	1	0	1	0	1	0	0	0	0	9556	1319	46	0	1083	0	MET	7	116340219	In_Frame_Del	DEL	GCC	TCGA-AR-A0TU-01A-31D-A10G-09	5	116340219	42798444	32	38762	316	3								
MET	0	genome.wustl.edu	37	chr7	116340222	116340223	+	Frame_Shift_Ins	INS	-	-	T													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	accaatggatcgatctgccaINStgtgtgcattccctatcaaa							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340222	116340223	-	T	INS	MET	ENST00000318493	human	ensembl	69_37n	1	known	frame_shift_ins	c.1084_1085	p.M362fs	0.551:1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0	17	7	29.17	-	-	-	T	116340223	-	T	116340222	7	5	364	1	0	1	1	0	0	0	0	0	9556	217	8	0	1086	0	MET	7	116340222	Frame_Shift_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09	3	116340222	42798441	33	38763	316	3								
ODF1	0	genome.wustl.edu	37	chr8	103572897	103572898	+	Frame_Shift_Del	DEL	TG	TG	-													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aagagttcagcttgccgcccTgtgtggatgagaaggatgta							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	8	103572897	103572898	TG	-	DEL	ODF1	ENST00000285402	human	ensembl	69_37n	1	known	frame_shift_del	c.538_539	p.V181fs	0.120:0.137	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	-	no_errors	ODF1	HGNC	ENSG00000155087	34	0	0	38	13	25	-	-	-	-	103572898	TG	-	103572897	7	5	364	1	0	1	0	1	0	0	0	0	10899	1580	55	0	544	0	ODF1	8	103572897	Frame_Shift_Del	DEL	TG	TCGA-AR-A0TU-01A-31D-A10G-09		103572897	42791125	34	38764										
TLN1	0	genome.wustl.edu	37	chr9	35711758	35711758	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cttcattcaaccggctctgaGcttcttgaaatgtcccagtg	8	12	4	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	35711758	35711758	G	C	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.3713	p.A1238G	1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	15	0	0	4	10	71.43	-	-	-	C	35711758	G	C	35711758	3	2	364	1	0	0	0	0	1	0	0	0	16042	971	34	4	4028	4	TLN1	9	35711758	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		35711758	105501673	35	38765										
TRPM6	0	genome.wustl.edu	37	chr9	77435320	77435320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gaatcatgcagatgatctccTctttcacctgaggtcgcagc	9	12	4	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	77435320	77435320	T	G	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.1034	p.E345A	0.997	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	75	0	0	69	33	32.35	-	-	-	G	77435320	T	G	77435320	3	3	364	1	0	0	0	0	1	0	0	0	16686	1551	54	5	5158	5	TRPM6	9	77435320	Missense_Mutation	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09	41723562	77435320	63778111	36	38766										
PRUNE2	0	genome.wustl.edu	37	chr9	79320287	79320287	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cctgaggcatcgctgaaactGtggtcaaaggcagcttcgct	12	11	1	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	79320287	79320287	G	C	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.5826	p.H1942Q	0.998	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	24	0	0	15	11	42.31	-	-	-	C	79320287	G	C	79320287	3	2	364	1	0	0	0	0	1	0	0	0	12721	1368	48	4	2411	4	PRUNE2	9	79320287	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	1884967	79320287	61893144	37	38767										
IDI1	0	genome.wustl.edu	37	chr10	1094816	1094816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cacagtacctgatcagcctcCggccacagacaaccgccggt	9	17	1	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	1094816	1094816	C	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.128	p.R43Q	0.001	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	9	0	0	2	5	71.43	-	-	-	T	1094816	C	T	1094816	3	4	364	1	0	0	0	0	1	0	0	0	7553	652	23	1	746	1	IDI1	10	1094816	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		1094816	134439931	38	38768										
BICC1	0	genome.wustl.edu	37	chr10	60553276	60553276	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cttgtgttgatgtttgatatGaaggaagaaattgaagtaga	12	1	0	6			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	60553276	60553276	G	A	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.1080	p.M360I	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	223	0	0	203	60	22.73	-	-	-	A	60553276	G	A	60553276	3	1	364	1	0	0	0	0	1	0	0	0	1432	1290	45	2	1114	2	BICC1	10	60553276	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	59458460	60553276	74981471	39	38769										
IFIT5	0	genome.wustl.edu	37	chr10	91177984	91177984	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtttgcatttgcctacacagAcctggccaacatgtacgctg	9	12	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	91177984	91177984	A	G	SNP	IFIT5	ENST00000371795	human	ensembl	69_37n	1	known	missense	c.1028	p.D343G	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778	53	0	0	37	26	40.62	-	-	-	G	91177984	A	G	91177984	3	3	364	1	0	0	0	0	1	0	0	0	7579	275	10	5	1034	5	IFIT5	10	91177984	Missense_Mutation	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	30624708	91177984	44356763	40	38770										
MMS19	0	genome.wustl.edu	37	chr10	99220677	99220677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tccttacccagagaagaagaGtgaaggcctgactacgacag	11	10	0	5			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	99220677	99220677	G	A	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	missense	c.2399	p.T800I	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	20	0	0	16	14	46.67	-	-	-	A	99220677	G	A	99220677	3	1	364	1	0	0	0	0	1	0	0	0	9744	1029	36	4	725	4	MMS19	10	99220677	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	8042693	99220677	36314070	41	38771										
OR2D2	0	genome.wustl.edu	37	chr11	6913043	6913044	+	Frame_Shift_Ins	INS	-	-	T													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	cttgagactccccacagttgINSacttcatcttgaccacagtt							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	6913043	6913044	-	T	INS	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.689_688	p.S230fs	0.833:0.817	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	49	0	0	13	2	13.33	-	-	-	T	6913044	-	T	6913043	7	5	364	1	0	1	1	0	0	0	0	0	11067	1294	45	0	240	0	OR2D2	11	6913043	Frame_Shift_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09		6913043	128093473	42	38772										
C11orf52	0	genome.wustl.edu	37	chr11	111789707	111789707	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	acagagcgccatgggaaaccGggtctgctgcggaggaagct	16	10	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	111789707	111789707	G	C	SNP	C11orf52	ENST00000278601	human	ensembl	69_37n	1	known	missense	c.11	p.R4P	0.007	NULL	NULL	-	no_errors	C11orf52	HGNC	ENSG00000149300	43	0	0	19	36	64.29	-	-	-	C	111789707	G	C	111789707	3	2	364	1	0	0	0	0	1	0	0	0	1658	1116	39	3	13	3	C11orf52	11	111789707	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	104876664	111789707	23216809	43	38773										
OR8D1	0	genome.wustl.edu	37	chr11	124179975	124179976	+	Frame_Shift_Ins	INS	-	-	AT													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttggaccggccctctgaggaINSgcggatgtgaaggatgctgt							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	124179975	124179976	-	AT	INS	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.688_687	p.S229fs	0.020:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	50	0	0	16	2	11.11	-	-	-	AT	124179976	-	AT	124179975	7	5	364	1	0	1	1	0	0	0	0	0	11304	304	11	0	241	0	OR8D1	11	124179975	Frame_Shift_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09	12390268	124179975	10826541	44	38774										
ANO2	0	genome.wustl.edu	37	chr12	5674793	5674793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tgtttcgaaaactcataaggGttcggggcccatggcggctc	13	10	1	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	5674793	5674793	G	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.2661	p.N887K	0.884	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	31	0	0	42	19	31.15	-	-	-	T	5674793	G	T	5674793	3	4	364	1	0	0	0	0	1	0	0	0	696	1252	44	4	346	4	ANO2	12	5674793	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		5674793	128177102	45	38775										
KCNJ8	0	genome.wustl.edu	37	chr12	21919255	21919255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttttcttgaccacctggatgCgcacagaggcactaatgatc	9	11	1	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	21919255	21919255	C	T	SNP	KCNJ8	ENST00000240662	human	ensembl	69_37n	-1	known	missense	c.677	p.R226H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	34	0	0	16	11	40.74	-	-	-	T	21919255	C	T	21919255	3	4	364	1	0	0	0	0	1	0	0	0	8110	768	27	1	601	1	KCNJ8	12	21919255	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	16244462	21919255	111932640	46	38776										
VDR	0	genome.wustl.edu	37	chr12	48240182	48240182	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tcatgcaagttcagcttcttCagtcccacctggaacttgat	7	12	4	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	48240182	48240182	C	T	SNP	VDR	ENST00000229022	human	ensembl	69_37n	-1	known	silent	c.960	p.L320	0.999	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424	13	0	0	3	5	62.5	-	-	-	T	48240182	C	T	48240182	2	4	364	1	0	0	0	0	0	0	0	1	17246	813	29	2		2	VDR	12	48240182	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	26320927	48240182	85611713	47	38777										
KCNC2	0	genome.wustl.edu	37	chr12	75441951	75441951	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	acctttcctgatccctccatCagaagcacacgtgtaatcac	5	15	2	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	75441951	75441951	C	T	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	missense	c.1762	p.D588N	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	57	0	0	11	16	59.26	-	-	-	T	75441951	C	T	75441951	3	4	364	1	0	0	0	0	1	0	0	0	8069	826	29	2	228	2	KCNC2	12	75441951	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	27201769	75441951	58409944	48	38778										
CNIH	0	genome.wustl.edu	37	chr14	54896977	54896977	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tcattttaccttttcaacttAcccatataggtagtaaaaaa	3	8	2	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	54896977	54896977	A	C	SNP	CNIH	ENST00000216416	human	ensembl	69_37n	-1	known	splice_site	c.407+2	e4+2	1.000	-	-	-	no_errors	CNIH	HGNC	ENSG00000100528	128	0	0	97	64	39.51	-	-	-	C	54896977	A	C	54896977	5	2	364	1	0	0	0	0	0	0	1	0	3632	405	14	5	33	5	CNIH	14	54896977	Splice_Site	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09		54896977	52452563	49	38779										
PROX2	0	genome.wustl.edu	37	chr14	75329523	75329523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aatctgattttcctggatgtGggaaggtgcagtcaagggaa	14	5	2	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	75329523	75329523	G	T	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.1015	p.H339N	0.070	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	45	0	0	14	26	63.41	-	-	-	T	75329523	G	T	75329523	3	4	364	1	0	0	0	0	1	0	0	0	12642	1348	47	4	779	4	PROX2	14	75329523	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	20432546	75329523	32020017	50	38780										
CRIP2	0	genome.wustl.edu	37	chr14	105945815	105945815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	acaagccctgctatggaatcCtcttcggacccaagggtgag	11	12	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	105945815	105945815	C	G	SNP	CRIP2	ENST00000329146	human	ensembl	69_37n	1	known	missense	c.544	p.L182V	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CRIP2	HGNC	ENSG00000182809	20	0	0	7	11	61.11	-	-	-	G	105945815	C	G	105945815	3	3	364	1	0	0	0	0	1	0	0	0	3905	681	24	4	570	4	CRIP2	14	105945815	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	30616292	105945815	1403725	51	38781										
HERC2	0	genome.wustl.edu	37	chr15	28446656	28446656	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tcattactcaagaaatcagcTcgttttttgtacgtctggct	7	9	4	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	28446656	28446656	T	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.7662	p.R2554	1.000	pfam_CPH_domain	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	126	0	0	57	87	60	-	-	-	A	28446656	T	A	28446656	2	1	364	1	0	0	0	0	0	0	0	1	7109	1538	54	5		5	HERC2	15	28446656	Silent	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09		28446656	74084736	52	38782										
VPS18	0	genome.wustl.edu	37	chr15	41195138	41195138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ggcgagacctgcaggagctgCggggccgctacggcactgtg	18	12	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	41195138	41195138	C	T	SNP	VPS18	ENST00000220509	human	ensembl	69_37n	1	known	missense	c.2521	p.R841W	1.000	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	16	0	0	11	19	61.29	-	-	-	T	41195138	C	T	41195138	3	4	364	1	0	0	0	0	1	0	0	0	17291	759	27	1	2539	1	VPS18	15	41195138	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	12748482	41195138	61336254	53	38783										
MAPKBP1	0	genome.wustl.edu	37	chr15	42113197	42113197	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	caggaccctagccaggactcGctggccatcatcccatctgg	10	16	2	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	42113197	42113197	G	C	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	silent	c.2667	p.S889	0.006	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	9	0	0	2	5	71.43	-	-	-	C	42113197	G	C	42113197	2	2	364	1	0	0	0	0	0	0	0	1	9363	1074	38	3		3	MAPKBP1	15	42113197	Silent	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	918059	42113197	60418195	54	38784										
VPS13C	0	genome.wustl.edu	37	chr15	62172909	62172909	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tagagcatcaatatcttgttGgattaactttgtctgaaaaa	7	5	3	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	62172909	62172909	G	C	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.9901	p.Q3301E	0.978	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	118	0	0	13	19	59.38	-	-	-	C	62172909	G	C	62172909	3	2	364	1	0	0	0	0	1	0	0	0	17288	1357	47	4	1440	4	VPS13C	15	62172909	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	20059712	62172909	40358483	55	38785										
GRIN2A	0	genome.wustl.edu	37	chr16	9857875	9857875	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtcgttgttggaaagcccctCttcattatgcaaggggttcc	11	10	2	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	16	9857875	9857875	C	A	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	nonsense	c.3526	p.E1176*	0.976	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	32	0	0	4	16	80	-	-	-	A	9857875	C	A	9857875	4	1	364	1	0	0	0	0	0	1	0	0	6830	922	32	2	872	2	GRIN2A	16	9857875	Nonsense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		9857875	80496878	56	38786										
HYDIN	0	genome.wustl.edu	37	chr16	70993566	70993566	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctacctgacaagggtgtcccAtgaatgataatggcgatgcc	11	10	0	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	16	70993566	70993566	A	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.6123	p.H2041	0.953	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	13	0	0	2	3	60	-	-	-	G	70993566	A	G	70993566	2	3	364	1	0	0	0	0	0	0	0	1	7521	214	8	5		5	HYDIN	16	70993566	Silent	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	61135691	70993566	19361187	57	38787										
KRT14	0	genome.wustl.edu	37	chr17	39740663	39740663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gcaggttcaactctgtctcaTacctggaatgaccccagaga	9	12	3	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	39740663	39740663	T	C	SNP	KRT14	ENST00000167586	human	ensembl	69_37n	-1	known	missense	c.611	p.Y204C	0.939	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	27	0	0	9	20	68.97	-	-	-	C	39740663	T	C	39740663	3	2	364	1	0	0	0	0	1	0	0	0	8504	1406	49	5	831	5	KRT14	17	39740663	Missense_Mutation	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09		39740663	41454547	58	38788										
CD300A	0	genome.wustl.edu	37	chr17	72469868	72469868	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aacggccgagtgtccatcagGgacagtcctgcaaacctcag	11	13	2	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	72469868	72469868	G	C	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	1	known	missense	c.234	p.R78S	0.997	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	47	0	0	64	8	11.11	-	-	-	C	72469868	G	C	72469868	3	2	364	1	0	0	0	0	1	0	0	0	3025	1223	43	4	240	4	CD300A	17	72469868	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	32729205	72469868	8725342	59	38789										
LAMA3	0	genome.wustl.edu	37	chr18	21481288	21481288	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gagctttgggagccattcagGtgagttcacagtttgaagtt	13	6	2	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	18	21481288	21481288	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	splice_site	c.6201+1	e48+1	1.000	-	-	-	no_errors	LAMA3	HGNC	ENSG00000053747	30	0	0	18	13	41.94	-	-	-	T	21481288	G	T	21481288	5	4	364	1	0	0	0	0	0	0	1	0	8661	1275	44	4	6567	4	LAMA3	18	21481288	Splice_Site	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09		21481288	56595960	60	38790										
ACSBG2	0	genome.wustl.edu	37	chr19	6183236	6183236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ttgtatgggttgagtgagagCtcgggaccccacacgatatc	13	9	0	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	6183236	6183236	C	T	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	silent	c.1275	p.S425	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	23	0	0	16	15	48.39	-	-	-	T	6183236	C	T	6183236	2	4	364	1	0	0	0	0	0	0	0	1	174	796	28	4		4	ACSBG2	19	6183236	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		6183236	52945747	61	38791										
KIAA1683	0	genome.wustl.edu	37	chr19	18377840	18377840	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tccggatgctggaagcgcacCtgctgtggggcgtgataagg	17	9	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	18377840	18377840	C	A	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	missense	c.510	p.Q170H	0.997	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	11	0	0	19	14	42.42	-	-	-	A	18377840	C	A	18377840	3	1	364	1	0	0	0	0	1	0	0	0	8303	680	24	4	3601	4	KIAA1683	19	18377840	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	12194604	18377840	40751143	62	38792										
ZIM3	0	genome.wustl.edu	37	chr19	57649909	57649909	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtttctctgttcgggattcaGccgctgccactccccctggg	11	15	2	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	57649909	57649909	G	C	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.73	p.L25V	0.003	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	41	0	0	12	20	62.5	-	-	-	C	57649909	G	C	57649909	3	2	364	1	0	0	0	0	1	0	0	0	17781	962	34	4	1357	4	ZIM3	19	57649909	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	39272069	57649909	1479074	63	38793										
HNF4A	0	genome.wustl.edu	37	chr20	43036067	43036067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aagacaagaggaaccagtgcCgctactgcaggctcaagaaa	11	10	1	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	20	43036067	43036067	C	G	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	1	known	missense	c.337	p.R113G	0.990	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	14	0	0	6	10	62.5	-	-	-	G	43036067	C	G	43036067	3	3	364	1	0	0	0	0	1	0	0	0	7304	652	23	3	400	3	HNF4A	20	43036067	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		43036067	19989453	64	38794										
NF2	0	genome.wustl.edu	37	chr22	30057312	30057312	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gaatgaaatccgaaacatctCgtacagtgacaaggaggtag	11	7	1	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	30057312	30057312	C	A	SNP	NF2	ENST00000338641	human	ensembl	69_37n	1	known	nonsense	c.794	p.S265*	1.000	pirsf_ERM,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,prints_Tropomyosin,pfscan_FERM_domain	-	no_errors	NF2	HGNC	ENSG00000186575	48	0	0	12	19	61.29	-	-	-	A	30057312	C	A	30057312	4	1	364	1	0	0	0	0	0	1	0	0	10429	893	31	3	824	3	NF2	22	30057312	Nonsense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09		30057312	21247254	65	38795										
HDAC10	0	genome.wustl.edu	37	chr22	50688545	50688545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gtgagcacagcgtccaccagCtgcagtccagcccctgcggc	12	17	0	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	50688545	50688545	C	T	SNP	HDAC10	ENST00000415993	human	ensembl	69_37n	-1	known	missense	c.239	p.S80N	1.000	NULL	NULL	-	no_errors	HDAC10	HGNC	ENSG00000100429	12	0	0	11	14	56	-	-	-	T	50688545	C	T	50688545	3	4	364	1	0	0	0	0	1	0	0	0	7056	796	28	4	1741	4	HDAC10	22	50688545	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	20631233	50688545	616021	66	38796										
RPGR	0	genome.wustl.edu	37	chrX	38145271	38145272	+	In_Frame_Ins	INS	-	-	CCC													0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ctccccttcttcttccccttINScctcctcttccccctcccct							TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	38145271	38145272	-	CCC	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_ins	c.2981_2980	p.994in_frame_insG	0.060:0.135	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	39	0	0	19	3	13.64	-	-	-	CCC	38145272	-	CCC	38145271	7	5	364	1	0	1	1	0	0	0	0	0	13634	1783	62	0	1040	0	RPGR	23	38145271	In_Frame_Ins	INS	-	TCGA-AR-A0TU-01A-31D-A10G-09		38145271	117125289	67	38797										
FAAH2	0	genome.wustl.edu	37	chrX	57358158	57358158	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	accaactgtagtgagttgtgTatgtggtatgaatccagtaa	11	5	0	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	57358158	57358158	T	C	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	1	known	silent	c.540	p.C180	1.000	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591	79	0	0	20	11	35.48	-	-	-	C	57358158	T	C	57358158	2	2	364	1	0	0	0	0	0	0	0	1	5394	1644	57	5		5	FAAH2	23	57358158	Silent	SNP	T	TCGA-AR-A0TU-01A-31D-A10G-09	19212887	57358158	97912402	68	38798										
AWAT1	0	genome.wustl.edu	37	chrX	69459753	69459753	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	tgtcaaggctccactgggctCctgccatactccaggcctat	9	15	1	0			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	69459753	69459753	C	T	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	1	known	silent	c.801	p.L267	0.704	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	86	0	0	81	31	27.68	-	-	-	T	69459753	C	T	69459753	2	4	364	1	0	0	0	0	0	0	0	1	1238	842	30	2		2	AWAT1	23	69459753	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	12101595	69459753	85810807	69	38799										
SLC7A3	0	genome.wustl.edu	37	chrX	70149842	70149842	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	aatctgcgaaatgcttgccaCggcatcctagcaggaattga	10	10	1	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	70149842	70149842	C	T	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	silent	c.6	p.P2	0.801	tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	9	0	0	10	6	37.5	-	-	-	T	70149842	C	T	70149842	2	4	364	1	0	0	0	0	0	0	0	1	14787	523	19	1		1	SLC7A3	23	70149842	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	690089	70149842	85120718	70	38800										
ZNF711	0	genome.wustl.edu	37	chrX	84526405	84526405	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	catactaaggattttcctcaCaaatgtgaggtctgtgataa	8	7	2	2			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	84526405	84526405	C	A	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.1881	p.H627Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	48	0	0	14	16	53.33	-	-	-	A	84526405	C	A	84526405	3	1	364	1	0	0	0	0	1	0	0	0	18212	477	17	4	1883	4	ZNF711	23	84526405	Missense_Mutation	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	14376563	84526405	70744155	71	38801										
MAGEC3	0	genome.wustl.edu	37	chrX	140969432	140969432	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gaccatttctatgtctttgtAaacacattagacctcacctg	5	11	3	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	140969432	140969432	A	G	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	silent	c.759	p.V253	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	66	0	0	92	33	26.19	-	-	-	G	140969432	A	G	140969432	2	3	364	1	0	0	0	0	0	0	0	1	9253	349	13	5		5	MAGEC3	23	140969432	Silent	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	56443027	140969432	14301128	72	38802										
MAMLD1	0	genome.wustl.edu	37	chrX	149639246	149639246	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gagaagctctctagcccaggCttgccacagcagtccttcac	9	15	2	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	149639246	149639246	C	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	silent	c.1326	p.G442	0.027	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	20	0	0	14	17	53.12	-	-	-	A	149639246	C	A	149639246	2	1	364	1	0	0	0	0	0	0	0	1	9279	784	28	4		4	MAMLD1	23	149639246	Silent	SNP	C	TCGA-AR-A0TU-01A-31D-A10G-09	8669814	149639246	5631314	73	38803										
PASD1	0	genome.wustl.edu	37	chrX	150844587	150844587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	gaccagattgatgcctgcagAgcaacgtgactcaaataagc	10	10	1	4			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	150844587	150844587	A	G	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	missense	c.2294	p.E765G	0.002	NULL	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	37	0	0	36	13	26.53	-	-	-	G	150844587	A	G	150844587	3	3	364	1	0	0	0	0	1	0	0	0	11544	304	11	5	2352	5	PASD1	23	150844587	Missense_Mutation	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	1205341	150844587	4425973	74	38804										
F8	0	genome.wustl.edu	37	chrX	154159895	154159895	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	acaactagaaaccttcagtaAggcggtcatgcctctgttcc	8	12	3	1			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154159895	154159895	A	G	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.2170	p.L724	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	68	0	0	28	46	62.16	-	-	-	G	154159895	A	G	154159895	2	3	364	1	0	0	0	0	0	0	0	1	5387	69	3	5		5	F8	23	154159895	Silent	SNP	A	TCGA-AR-A0TU-01A-31D-A10G-09	3315308	154159895	1110665	75	38805										
F8	0	genome.wustl.edu	37	chrX	154194287	154194287	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108108108108108	8	0.554547847860328	1.33465739821251	1.49167591564928	1.20754716981132	1	1	0	ccataaagtaaaggtcccaaGattcctgattcatgctgaat	7	9	1	3			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154194287	154194287	G	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.1401	p.I467M	0.980	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	138	1	0.72	127	16	11.11	-	-	-	C	154194287	G	C	154194287	3	2	364	1	0	0	0	0	1	0	0	0	5387	932	33	2	5754	2	F8	23	154194287	Missense_Mutation	SNP	G	TCGA-AR-A0TU-01A-31D-A10G-09	34392	154194287	1076273	76	38806										
CASZ1	0	genome.wustl.edu	37	chr1	10720544	10720544	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcatagccaaacatgccgagGaactcggtcatggtggaggc	13	10	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	10720544	10720544	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	silent	c.555	p.F185	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	57	0	0	37	9	19.57	-	-	-	A	10720544	G	A	10720544	2	1	365	1	0	0	0	0	0	0	0	1	2710	1165	41	2		2	CASZ1	1	10720544	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		10720544	238530077	1	38807										
PTCHD2	0	genome.wustl.edu	37	chr1	11584097	11584097	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcccctgggctagccggcctGaggccaccctgcagggtgag	15	15	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	11584097	11584097	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	missense	c.2461	p.E821K	0.779	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	40	0	0	48	12	20	-	-	-	A	11584097	G	A	11584097	3	1	365	1	0	0	0	0	1	0	0	0	12813	1291	45	2	2499	2	PTCHD2	1	11584097	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	863553	11584097	237666524	2	38808										
SPEN	0	genome.wustl.edu	37	chr1	16260482	16260482	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttgactctaaaaagcctttaGaagaaaaaacagcacctcca	5	10	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	16260482	16260482	G	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.7747	p.E2583*	0.915	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	43	0	0	32	8	20	-	-	-	T	16260482	G	T	16260482	4	4	365	1	0	0	0	0	0	1	0	0	15129	943	33	2	7789	2	SPEN	1	16260482	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	4676385	16260482	232990139	3	38809										
NBPF1	0	genome.wustl.edu	37	chr1	16892212	16892212	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caggcaggagtcaggctgttCaagacaactggaaggagttg	15	7	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	16892212	16892212	C	G	SNP	NBPF1	ENST00000430580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	324	0	0	58	7	10.77	-	-	-	G	16892212	C	G	16892212	1	3	365	0	1	0	0	0	0	0	0	0	10264	835	29	2		2	NBPF1	1	16892212	RNA	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	631730	16892212	232358409	4	38810										
UBR4	0	genome.wustl.edu	37	chr1	19464532	19464532	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtggacatctccttcagtttCtccttctccttctccctcgg	6	16	5	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	19464532	19464532	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.8875	p.E2959K	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	114	0	0	72	19	20.65	-	-	-	T	19464532	C	T	19464532	3	4	365	1	0	0	0	0	1	0	0	0	17001	922	32	2	6864	2	UBR4	1	19464532	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2572320	19464532	229786089	5	38811										
ZMYM4	0	genome.wustl.edu	37	chr1	35835996	35835996	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cacagttgactactggctttCagccctcactggcgtcatct	8	14	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	35835996	35835996	C	G	SNP	ZMYM4	ENST00000457946	human	ensembl	69_37n	1	known	nonsense	c.194	p.S65*	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZMYM4	HGNC	ENSG00000146463	31	0	0	20	8	28.57	-	-	-	G	35835996	C	G	35835996	4	3	365	1	0	0	0	0	0	1	0	0	17798	827	29	2	975	2	ZMYM4	1	35835996	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	16371464	35835996	213414625	6	38812										
FOXJ3	0	genome.wustl.edu	37	chr1	42654583	42654583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcttgagatctgcctgtctCatactctccatcagacctat	5	13	5	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	42654583	42654583	C	G	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.1470	p.M490I	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	89	0	0	48	13	21.31	-	-	-	G	42654583	C	G	42654583	3	3	365	1	0	0	0	0	1	0	0	0	6061	826	29	2	410	2	FOXJ3	1	42654583	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6818587	42654583	206596038	7	38813										
CYP4Z1	0	genome.wustl.edu	37	chr1	47581263	47581263	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cctatttctgggaagaccctCaggtatgattgtcccaactg	9	11	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	47581263	47581263	C	T	SNP	CYP4Z1	ENST00000334194	human	ensembl	69_37n	1	known	nonsense	c.1264	p.Q422*	0.002	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160	230	0	0	111	22	16.42	-	-	-	T	47581263	C	T	47581263	4	4	365	1	0	0	0	0	0	1	0	0	4225	827	29	2	1302	2	CYP4Z1	1	47581263	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	4926680	47581263	201669358	8	38814										
ROR1	0	genome.wustl.edu	37	chr1	64624667	64624667	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcatttctgcacccagattCaaaggattccaaggagaaga	8	9	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	64624667	64624667	C	G	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	nonsense	c.1178	p.S393*	0.990	pirsf_Tyr_kinase_rcpt_ROR,superfamily_Kringle-like,smart_Kringle	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	95	0	0	53	15	22.06	-	-	-	G	64624667	C	G	64624667	4	3	365	1	0	0	0	0	0	1	0	0	13612	838	29	2	1216	2	ROR1	1	64624667	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	17043404	64624667	184625954	9	38815										
LEPR	0	genome.wustl.edu	37	chr1	66085699	66085699	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccaaagataattaatagtttCactcaaggtaaaaattataa	4	5	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	66085699	66085699	C	T	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	silent	c.2484	p.F828	0.937	pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	183	0	0	40	5	11.11	-	-	-	T	66085699	C	T	66085699	2	4	365	1	0	0	0	0	0	0	0	1	8782	825	29	2		2	LEPR	1	66085699	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1461032	66085699	183164922	10	38816										
LRRC7	0	genome.wustl.edu	37	chr1	70291445	70291445	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttttaggtgtacaagaatttCcagaaaacataaagtgctgt	8	5	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	70291445	70291445	C	G	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.322	p.P108A	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	249	0	0	81	19	18.81	-	-	-	G	70291445	C	G	70291445	3	3	365	1	0	0	0	0	1	0	0	0	9086	855	30	2	332	2	LRRC7	1	70291445	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	4205746	70291445	178959176	11	38817										
EVI5	0	genome.wustl.edu	37	chr1	93170218	93170218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gactgaggttgctagaggctGatgaactcgacacaagagaa	13	7	0	5			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	93170218	93170218	G	A	SNP	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	missense	c.365	p.S122L	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	307	0	0	205	39	15.98	-	-	-	A	93170218	G	A	93170218	3	1	365	1	0	0	0	0	1	0	0	0	5326	1294	45	2	2131	2	EVI5	1	93170218	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	22878773	93170218	156080403	12	38818										
PTPN22	0	genome.wustl.edu	37	chr1	114380586	114380586	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cctgcatctctacaaaacaaGaatcatgtggttgagattcc	7	10	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	114380586	114380586	G	C	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.1436	p.S479C	0.057	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	132	0	0	51	19	27.14	-	-	-	C	114380586	G	C	114380586	3	2	365	1	0	0	0	0	1	0	0	0	12870	942	33	2	1046	2	PTPN22	1	114380586	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	21210368	114380586	134870035	13	38819										
PTPN22	0	genome.wustl.edu	37	chr1	114380881	114380881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaaactgtaatttagctccaGaaagtcaaaagaagtgcttg	8	6	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	114380881	114380881	G	C	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.1141	p.L381V	0.484	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	233	0	0	71	31	30.1	-	-	-	C	114380881	G	C	114380881	3	2	365	1	0	0	0	0	1	0	0	0	12870	933	33	2	1341	2	PTPN22	1	114380881	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	295	114380881	134869740	14	38820										
NUP210L	0	genome.wustl.edu	37	chr1	154030634	154030634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgaagtatttattttggaatGggcgtttggaagagccaaga	13	3	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	154030634	154030634	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.3038	p.P1013L	0.996	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	230	0	0	123	30	19.48	-	-	-	A	154030634	G	A	154030634	3	1	365	1	0	0	0	0	1	0	0	0	10834	1348	47	4	2704	4	NUP210L	1	154030634	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	39649753	154030634	95219987	15	38821										
GON4L	0	genome.wustl.edu	37	chr1	155721824	155721824	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	acacaccgtagcttctgcggCctttggctgctgctccccct	9	17	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	155721824	155721824	C	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.6400	p.A2134S	0.703	superfamily_Homeodomain-like	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	199	0	0	75	26	25.74	-	-	-	A	155721824	C	A	155721824	3	1	365	1	0	0	0	0	1	0	0	0	6621	739	26	4	337	4	GON4L	1	155721824	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1691190	155721824	93528797	16	38822										
HSD17B7	0	genome.wustl.edu	37	chr1	162769553	162769553	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	attcgggaactggagcctctCctctgtcacagtgacaatcc	9	13	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	162769553	162769553	C	G	SNP	HSD17B7	ENST00000254521	human	ensembl	69_37n	1	known	silent	c.468	p.L156	0.551	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196	106	0	0	74	16	17.78	-	-	-	G	162769553	C	G	162769553	2	3	365	1	0	0	0	0	0	0	0	1	7439	842	30	2		2	HSD17B7	1	162769553	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7047729	162769553	86481068	17	38823										
NCF2	0	genome.wustl.edu	37	chr1	183559438	183559438	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccagcaccccttcattccaGaggctgatggcctccaccag	9	17	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	183559438	183559438	G	C	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	silent	c.27	p.L9	0.995	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	72	0	0	44	9	16.98	-	-	-	C	183559438	G	C	183559438	2	2	365	1	0	0	0	0	0	0	0	1	10289	929	33	2		2	NCF2	1	183559438	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	20789885	183559438	65691183	18	38824										
ELF3	0	genome.wustl.edu	37	chr1	201984496	201984496	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aactcacggaccactcgaggCctgcaaaccttcctgggagg	11	14	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	201984496	201984496	C	T	SNP	ELF3	ENST00000475698	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ELF3	HGNC	ENSG00000163435	53	0	0	49	11	18.33	-	-	-	T	201984496	C	T	201984496	1	4	365	0	1	0	0	0	0	0	0	0	5092	754	26	4		4	ELF3	1	201984496	RNA	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	18425058	201984496	47266125	19	38825										
ADORA1	0	genome.wustl.edu	37	chr1	203134926	203134926	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtctatgccttccgcatccaGaagttccgcgtcaccttcct	7	16	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	203134926	203134926	G	A	SNP	ADORA1	ENST00000309502	human	ensembl	69_37n	1	known	silent	c.879	p.Q293	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adenosn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485	236	0	0	97	23	19.17	-	-	-	A	203134926	G	A	203134926	2	1	365	1	0	0	0	0	0	0	0	1	326	933	33	2		2	ADORA1	1	203134926	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1150430	203134926	46115695	20	38826										
NUAK2	0	genome.wustl.edu	37	chr1	205273335	205273335	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccatgtcattctccttgcggGacttcttgagcgaatgctgg	11	11	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	205273335	205273335	G	T	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	missense	c.1130	p.S377Y	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	119	0	0	44	11	20	-	-	-	T	205273335	G	T	205273335	3	4	365	1	0	0	0	0	1	0	0	0	10786	1174	41	2	760	2	NUAK2	1	205273335	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2138409	205273335	43977286	21	38827										
OR2T34	0	genome.wustl.edu	37	chr1	248737567	248737567	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagctcatggtaatgggggtGagcaacaaaccatcaaccat	10	9	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	1	248737567	248737567	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	silent	c.492	p.L164	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	55	0	0	27	10	27.03	-	-	-	A	248737567	G	A	248737567	2	1	365	1	0	0	0	0	0	0	0	1	11098	1277	45	2		2	OR2T34	1	248737567	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	43464232	248737567	513054	22	38828										
ROCK2	0	genome.wustl.edu	37	chr2	11332346	11332346	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gctgtatcttcattgaagttCtaggagatgatcgggcaaaa	11	6	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	11332346	11332346	C	G	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.4091	p.R1364T	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	245	0	0	137	27	16.46	-	-	-	G	11332346	C	G	11332346	3	3	365	1	0	0	0	0	1	0	0	0	13604	913	32	2	83	2	ROCK2	2	11332346	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		11332346	231867027	23	38829										
NLRC4	0	genome.wustl.edu	37	chr2	32474920	32474920	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgatatcttgcttattcaaCttgctgaaatcccggagtgt	8	9	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	32474920	32474920	C	G	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.2013	p.K671N	0.999	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	94	0	0	42	16	27.59	-	-	-	G	32474920	C	G	32474920	3	3	365	1	0	0	0	0	1	0	0	0	10541	564	20	4	1085	4	NLRC4	2	32474920	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	21142574	32474920	210724453	24	38830										
BIRC6	0	genome.wustl.edu	37	chr2	32770872	32770872	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cctcattcttgtctgtctctCtgctttgagccaccattccc	5	16	5	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	32770872	32770872	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.12755	p.S4252F	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	266	0	0	109	19	14.84	-	-	-	T	32770872	C	T	32770872	3	4	365	1	0	0	0	0	1	0	0	0	1443	913	32	2	13005	2	BIRC6	2	32770872	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	295952	32770872	210428501	25	38831										
SOS1	0	genome.wustl.edu	37	chr2	39214691	39214691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aggagggacaggcacttcatCagtgcctttggttaaactta	11	8	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	39214691	39214691	C	T	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	missense	c.3433	p.D1145N	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	175	0	0	80	10	11.11	-	-	-	T	39214691	C	T	39214691	3	4	365	1	0	0	0	0	1	0	0	0	15025	826	29	2	576	2	SOS1	2	39214691	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6443819	39214691	203984682	26	38832										
SLC8A1	0	genome.wustl.edu	37	chr2	40655984	40655984	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcaaagatatcatcatctatGatacccactctgatttcctt	3	11	5	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	40655984	40655984	G	C	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1437	p.I479M	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	68	0	0	64	16	20	-	-	-	C	40655984	G	C	40655984	3	2	365	1	0	0	0	0	1	0	0	0	14795	1280	45	2	1632	2	SLC8A1	2	40655984	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1441293	40655984	202543389	27	38833										
ABCG5	0	genome.wustl.edu	37	chr2	44065696	44065696	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgacgctgtaggaggcatgGaggatgcccaggctgtgagg	18	8	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	44065696	44065696	G	C	SNP	ABCG5	ENST00000260645	human	ensembl	69_37n	-1	known	silent	c.123	p.L41	0.016	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG5	HGNC	ENSG00000138075	15	0	0	26	7	21.21	-	-	-	C	44065696	G	C	44065696	2	2	365	1	0	0	0	0	0	0	0	1	71	1161	41	2		2	ABCG5	2	44065696	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3409712	44065696	199133677	28	38834										
SMEK2	0	genome.wustl.edu	37	chr2	55791554	55791554	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tccttcctcttcttcatcttCattaaaccacatttcttcat	0	14	7	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	55791554	55791554	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	missense	c.1900	p.E634K	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	483	0	0	180	28	13.4	-	-	-	T	55791554	C	T	55791554	3	4	365	1	0	0	0	0	1	0	0	0	14883	835	29	2	406	2	SMEK2	2	55791554	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	11725858	55791554	187407819	29	38835										
USP34	0	genome.wustl.edu	37	chr2	61468708	61468708	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cttatacctctagtaactctGacgaaacatcaaatttgtat	4	9	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	61468708	61468708	G	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.6764	p.S2255L	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	480	0	0	134	60	30.93	-	-	-	A	61468708	G	A	61468708	3	1	365	1	0	0	0	0	1	0	0	0	17162	1294	45	2	3988	2	USP34	2	61468708	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5677154	61468708	181730665	30	38836										
ETAA1	0	genome.wustl.edu	37	chr2	67637053	67637053	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gaatttttagaggaagaagaGaaaaatagaaagtgttctcc	10	3	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	67637053	67637053	G	C	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	1	known	missense	c.2664	p.E888D	0.999	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	87	0	0	106	19	15.2	-	-	-	C	67637053	G	C	67637053	3	2	365	1	0	0	0	0	1	0	0	0	5304	933	33	2	2686	2	ETAA1	2	67637053	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	6168345	67637053	175562320	31	38837										
ZNF638	0	genome.wustl.edu	37	chr2	71591252	71591252	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccaagaatttgccatcgtttCatttctagatacagatccag	6	10	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	71591252	71591252	C	T	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	silent	c.1587	p.F529	0.358	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	189	1	0.53	89	44	32.84	-	-	-	T	71591252	C	T	71591252	2	4	365	1	0	0	0	0	0	0	0	1	18151	825	29	2		2	ZNF638	2	71591252	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	3954199	71591252	171608121	32	38838										
MOGS	0	genome.wustl.edu	37	chr2	74688908	74688908	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caccacccgaacgagcccctGagggggcctgggcttcagct	13	16	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	74688908	74688908	G	C	SNP	MOGS	ENST00000233616	human	ensembl	69_37n	-1	known	missense	c.2008	p.Q670E	1.000	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	-	no_errors	MOGS	HGNC	ENSG00000115275	71	0	0	73	13	15.12	-	-	-	C	74688908	G	C	74688908	3	2	365	1	0	0	0	0	1	0	0	0	9769	1299	45	2	509	2	MOGS	2	74688908	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3097656	74688908	168510465	33	38839										
MRPL53	0	genome.wustl.edu	37	chr2	74699718	74699718	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgtcgattccacgtttttctCgaagggacagaactgaaccc	9	12	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	74699718	74699718	C	G	SNP	MRPL53	ENST00000258105	human	ensembl	69_37n	-1	known	missense	c.70	p.E24Q	1.000	pfam_Ribosomal_L53_mit,superfamily_Thioredoxin-like_fold	pfam_Ribosomal_L53_mit,superfamily_Thioredoxin-like_fold	-	no_errors	MRPL53	HGNC	ENSG00000204822	160	0	0	72	13	15.29	-	-	-	G	74699718	C	G	74699718	3	3	365	1	0	0	0	0	1	0	0	0	9889	893	31	3	280	3	MRPL53	2	74699718	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	10810	74699718	168499655	34	38840										
GCC2	0	genome.wustl.edu	37	chr2	109109048	109109048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gattgtgttcaatacagtcaGagaacatgatgatgaaatct	9	5	3	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	109109048	109109048	G	C	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.4249	p.E1417Q	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	102	0	0	53	14	20.9	-	-	-	C	109109048	G	C	109109048	3	2	365	1	0	0	0	0	1	0	0	0	6336	943	33	2	4323	2	GCC2	2	109109048	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	34409330	109109048	134090325	35	38841										
RANBP2	0	genome.wustl.edu	37	chr2	109380099	109380099	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aactccttttaaatttaactCaaatttcaaatcaaatgatg	2	7	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	109380099	109380099	C	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	nonsense	c.3104	p.S1035*	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	126	0	0	52	14	21.21	-	-	-	G	109380099	C	G	109380099	4	3	365	1	0	0	0	0	0	1	0	0	13111	838	29	2	3182	2	RANBP2	2	109380099	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	271051	109380099	133819274	36	38842										
EPB41L5	0	genome.wustl.edu	37	chr2	120848015	120848015	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gctgtggagcatcatgctttCttccgccttcgaggccccgt	11	14	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	120848015	120848015	C	G	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	missense	c.966	p.F322L	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	176	1	0.56	92	21	18.42	-	-	-	G	120848015	C	G	120848015	3	3	365	1	0	0	0	0	1	0	0	0	5194	912	32	2	1008	2	EPB41L5	2	120848015	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	11467916	120848015	122351358	37	38843										
KYNU	0	genome.wustl.edu	37	chr2	143746426	143746426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgcattaggagatcggagttCtttaattaggaatggaatgc	12	4	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	143746426	143746426	C	G	SNP	KYNU	ENST00000375773	human	ensembl	69_37n	1	known	missense	c.915	p.F305L	0.000	NULL	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	292	1	0.34	79	17	17.71	-	-	-	G	143746426	C	G	143746426	3	3	365	1	0	0	0	0	1	0	0	0	8641	912	32	2	953	2	KYNU	2	143746426	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	22898411	143746426	99452947	38	38844										
KIF5C	0	genome.wustl.edu	37	chr2	149835493	149835493	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agctgaagcaacagatgttgGatcaggatgaggtaaagaat	13	4	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	149835493	149835493	G	C	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.1351	p.D451H	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	140	0	0	66	14	17.28	-	-	-	C	149835493	G	C	149835493	3	2	365	1	0	0	0	0	1	0	0	0	8359	1174	41	2	1323	2	KIF5C	2	149835493	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	6089067	149835493	93363880	39	38845										
BAZ2B	0	genome.wustl.edu	37	chr2	160231237	160231237	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aatctgtttttccagctcttCaacacttgctgcttggtcac	6	12	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	160231237	160231237	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.4033	p.E1345K	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	400	0	0	116	24	17.14	-	-	-	T	160231237	C	T	160231237	3	4	365	1	0	0	0	0	1	0	0	0	1336	835	29	2	2521	2	BAZ2B	2	160231237	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	10395744	160231237	82968136	40	38846										
KCNH7	0	genome.wustl.edu	37	chr2	163241275	163241275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cttcaaaatcgagcccagatGctttccctattcctggagaa	7	12	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	163241275	163241275	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	missense	c.2885	p.A962V	0.711	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	329	0	0	113	18	13.64	-	-	-	A	163241275	G	A	163241275	3	1	365	1	0	0	0	0	1	0	0	0	8091	1319	46	4	721	4	KCNH7	2	163241275	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3010038	163241275	79958098	41	38847										
ABCB11	0	genome.wustl.edu	37	chr2	169826001	169826001	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcaaaaccaatgatggtatCtgcagctctgaccgtagaca	8	10	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	169826001	169826001	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.1870	p.D624Y	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	179	0	0	68	25	26.88	-	-	-	A	169826001	C	A	169826001	3	1	365	1	0	0	0	0	1	0	0	0	42	913	32	2	2147	2	ABCB11	2	169826001	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6584726	169826001	73373372	42	38848										
LRP2	0	genome.wustl.edu	37	chr2	170097843	170097843	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atcttcttggcactgaaattCatctgagtggcacataccag	8	10	4	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	170097843	170097843	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.3700	p.E1234K	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	60	0	0	46	9	16.36	-	-	-	T	170097843	C	T	170097843	3	4	365	1	0	0	0	0	1	0	0	0	9022	835	29	2	10487	2	LRP2	2	170097843	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	271842	170097843	73101530	43	38849										
MYO3B	0	genome.wustl.edu	37	chr2	171355142	171355142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagcacatcaaacacctcttGctagcaaagagagctgtgtg	9	11	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	171355142	171355142	G	C	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	missense	c.3082	p.A1028P	0.799	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	267	0	0	91	23	20.18	-	-	-	C	171355142	G	C	171355142	3	2	365	1	0	0	0	0	1	0	0	0	10149	1319	46	4	3157	4	MYO3B	2	171355142	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1257299	171355142	71844231	44	38850										
GAD1	0	genome.wustl.edu	37	chr2	171709249	171709249	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	actcagtcacctggaaccctCacaagatgatgggcgtgctg	11	12	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	171709249	171709249	C	T	SNP	GAD1	ENST00000358196	human	ensembl	69_37n	1	known	missense	c.1210	p.H404Y	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD1	HGNC	ENSG00000128683	278	1	0.36	128	22	14.67	-	-	-	T	171709249	C	T	171709249	3	4	365	1	0	0	0	0	1	0	0	0	6228	826	29	2	1297	2	GAD1	2	171709249	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	354107	171709249	71490124	45	38851										
TTN	0	genome.wustl.edu	37	chr2	179429698	179429698	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aatccagtggggcactttttCcatacctgttttcagcaaaa	7	10	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	179429698	179429698	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.73457	p.G24486A	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	157	0	0	73	17	18.89	-	-	-	G	179429698	C	G	179429698	3	3	365	1	0	0	0	0	1	0	0	0	16832	855	30	2	26966	2	TTN	2	179429698	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7720449	179429698	63769675	46	38852										
TTN	0	genome.wustl.edu	37	chr2	179456070	179456070	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgatgagaagttgtctgtttCaactgtgtagtgctcatcgg	12	6	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	179456070	179456070	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52678	p.E17560K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	163	1	0.61	94	15	13.76	-	-	-	T	179456070	C	T	179456070	3	4	365	1	0	0	0	0	1	0	0	0	16832	835	29	2	47833	2	TTN	2	179456070	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	26372	179456070	63743303	47	38853										
TTN	0	genome.wustl.edu	37	chr2	179650716	179650716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggaggctcagctacctttgcGgcggaaatgcgttccttata	12	10	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	179650716	179650716	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.2229	p.A743	0.001	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	125	0	0	52	16	23.53	-	-	-	A	179650716	G	A	179650716	2	1	365	1	0	0	0	0	0	0	0	1	16832	1103	39	1		1	TTN	2	179650716	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	194646	179650716	63548657	48	38854										
CWC22	0	genome.wustl.edu	37	chr2	180851479	180851479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttgaatgctcatagtctgatCtgctgtaatcaaagtaatct	7	7	5	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	180851479	180851479	C	G	SNP	CWC22	ENST00000295749	human	ensembl	69_37n	-1	known	missense	c.149	p.R50T	0.982	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	268	0	0	109	24	18.05	-	-	-	G	180851479	C	G	180851479	3	3	365	1	0	0	0	0	1	0	0	0	4099	913	32	2	2645	2	CWC22	2	180851479	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1200763	180851479	62347894	49	38855										
STK17B	0	genome.wustl.edu	37	chr2	197010664	197010664	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaggtgtacaatgttattctGatgtagataataaactcctt	7	5	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	197010664	197010664	G	A	SNP	STK17B	ENST00000263955	human	ensembl	69_37n	-1	known	nonsense	c.451	p.Q151*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17B	HGNC	ENSG00000081320	156	0	0	77	12	13.48	-	-	-	A	197010664	G	A	197010664	4	1	365	1	0	0	0	0	0	1	0	0	15382	1299	45	2	687	2	STK17B	2	197010664	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	16159185	197010664	46188709	50	38856										
HECW2	0	genome.wustl.edu	37	chr2	197105211	197105211	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtgacatatagcttatttctCtgcaggtcttttctggagta	9	7	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	197105211	197105211	C	G	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.3726	p.Q1242H	1.000	smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	251	0	0	84	16	16	-	-	-	G	197105211	C	G	197105211	3	3	365	1	0	0	0	0	1	0	0	0	7094	912	32	2	1028	2	HECW2	2	197105211	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	94547	197105211	46094162	51	38857										
FARSB	0	genome.wustl.edu	37	chr2	223464670	223464670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgatgctttgatcacatatCcccccttgtcttcaccagga	6	14	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	2	223464670	223464670	C	T	SNP	FARSB	ENST00000281828	human	ensembl	69_37n	-1	known	missense	c.1595	p.G532E	0.997	tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120	268	0	0	53	17	24.29	-	-	-	T	223464670	C	T	223464670	3	4	365	1	0	0	0	0	1	0	0	0	5726	855	30	2	182	2	FARSB	2	223464670	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	26359459	223464670	19734703	52	38858										
LRRN1	0	genome.wustl.edu	37	chr3	3888343	3888343	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaagtatatgcaaaaaacctCttcaatcccactaaatgagc	4	10	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	3888343	3888343	C	G	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	missense	c.2018	p.S673C	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	89	0	0	40	15	27.27	-	-	-	G	3888343	C	G	3888343	3	3	365	1	0	0	0	0	1	0	0	0	9100	913	32	2	2020	2	LRRN1	3	3888343	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		3888343	194134087	53	38859										
CDCP1	0	genome.wustl.edu	37	chr3	45127171	45127171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctcctgagtgttcagtaaggGaatgtctgtgtccttgctgc	12	9	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	45127171	45127171	G	T	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	missense	c.2470	p.P824T	0.977	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	202	0	0	65	23	25.84	-	-	-	T	45127171	G	T	45127171	3	4	365	1	0	0	0	0	1	0	0	0	3122	1174	41	2	44	2	CDCP1	3	45127171	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	41238828	45127171	152895259	54	38860										
SETD2	0	genome.wustl.edu	37	chr3	47165587	47165587	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcggtgagtctacagttgttGattctgctatcactgctggt	12	8	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	47165587	47165587	G	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	nonsense	c.539	p.S180*	0.856	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	583	0	0	365	73	16.67	-	-	-	C	47165587	G	C	47165587	4	2	365	1	0	0	0	0	0	1	0	0	14219	1294	45	2	7231	2	SETD2	3	47165587	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2038416	47165587	150856843	55	38861										
LAMB2	0	genome.wustl.edu	37	chr3	49160162	49160162	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aggaagtccttcacactctgGataagttcttgaagttcctg	9	9	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	49160162	49160162	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	silent	c.4548	p.I1516	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	148	0	0	68	11	13.75	-	-	-	A	49160162	G	A	49160162	2	1	365	1	0	0	0	0	0	0	0	1	8665	1164	41	2		2	LAMB2	3	49160162	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1994575	49160162	148862268	56	38862										
USP4	0	genome.wustl.edu	37	chr3	49348063	49348063	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tctcctctacctgcaaagcgGagttcatgaagcaggtgttt	10	10	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	49348063	49348063	G	C	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.944	p.S315C	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	347	0	0	96	29	22.83	-	-	-	C	49348063	G	C	49348063	3	2	365	1	0	0	0	0	1	0	0	0	17168	1174	41	2	2007	2	USP4	3	49348063	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	187901	49348063	148674367	57	38863										
AMIGO3	0	genome.wustl.edu	37	chr3	49756806	49756806	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	catttgtaggggcagttgtgGagcgcacggggcgggaaacc	18	8	0	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	49756806	49756806	G	C	SNP	AMIGO3	ENST00000320431	human	ensembl	69_37n	-1	known	silent	c.93	p.L31	0.021	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	AMIGO3	HGNC	ENSG00000176020	36	0	0	35	8	18.6	-	-	-	C	49756806	G	C	49756806	2	2	365	1	0	0	0	0	0	0	0	1	577	1161	41	2		2	AMIGO3	3	49756806	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	408743	49756806	148265624	58	38864										
PBRM1	0	genome.wustl.edu	37	chr3	52668737	52668737	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccttggttattccgacaactCctaactgtgtcataaagctg	7	11	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	52668737	52668737	C	G	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	missense	c.1182	p.R394S	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	200	0	0	85	20	19.05	-	-	-	G	52668737	C	G	52668737	3	3	365	1	0	0	0	0	1	0	0	0	11564	854	30	2	3798	2	PBRM1	3	52668737	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2911931	52668737	145353693	59	38865										
ALCAM	0	genome.wustl.edu	37	chr3	105271008	105271008	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	taagtattccagaacacgatGaggcagacgagataagtggt	12	6	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	105271008	105271008	G	A	SNP	ALCAM	ENST00000306107	human	ensembl	69_37n	1	known	missense	c.1528	p.E510K	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ALCAM	HGNC	ENSG00000170017	192	0	0	90	13	12.62	-	-	-	A	105271008	G	A	105271008	3	1	365	1	0	0	0	0	1	0	0	0	487	1291	45	2	1578	2	ALCAM	3	105271008	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	52602271	105271008	92751422	60	38866										
GOLGB1	0	genome.wustl.edu	37	chr3	121415752	121415752	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgttgctttagctcctccctGagatgtctttctttctcctg	7	12	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	121415752	121415752	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	silent	c.3603	p.L1201	0.907	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	323	0	0	132	23	14.84	-	-	-	A	121415752	G	A	121415752	2	1	365	1	0	0	0	0	0	0	0	1	6614	1277	45	2		2	GOLGB1	3	121415752	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	16144744	121415752	76606678	61	38867										
CASR	0	genome.wustl.edu	37	chr3	121975980	121975980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctatgatatttgccatagagGagataaacagcagcccagcc	9	10	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	121975980	121975980	G	A	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.238	p.E80K	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	164	0	0	88	24	21.24	-	-	-	A	121975980	G	A	121975980	3	1	365	1	0	0	0	0	1	0	0	0	2707	1175	41	2	244	2	CASR	3	121975980	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	560228	121975980	76046450	62	38868										
PARP9	0	genome.wustl.edu	37	chr3	122247483	122247483	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gaagaagcctgtgagtacttCagcctcaaacacatagatca	8	10	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	122247483	122247483	C	T	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	missense	c.2293	p.E765K	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	142	0	0	63	15	19.23	-	-	-	T	122247483	C	T	122247483	3	4	365	1	0	0	0	0	1	0	0	0	11539	835	29	2	275	2	PARP9	3	122247483	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	271503	122247483	75774947	63	38869										
TRIM59	0	genome.wustl.edu	37	chr3	160155837	160155837	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tatattctttaccttatgcaGactgttagataaactttggt	6	6	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	160155837	160155837	G	A	SNP	TRIM59	ENST00000309784	human	ensembl	69_37n	-1	known	silent	c.1135	p.L379	0.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM59	HGNC	ENSG00000213186	123	0	0	87	26	22.81	-	-	-	A	160155837	G	A	160155837	2	1	365	1	0	0	0	0	0	0	0	1	16628	933	33	2		2	TRIM59	3	160155837	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	37908354	160155837	37866593	64	38870										
PHC3	0	genome.wustl.edu	37	chr3	169847254	169847254	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgctgttgtaatatcagctGatgatgggaaactttggaag	12	5	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	169847254	169847254	G	A	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	nonsense	c.1006	p.Q336*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	443	0	0	193	40	17.09	-	-	-	A	169847254	G	A	169847254	4	1	365	1	0	0	0	0	0	1	0	0	11892	1299	45	2	2013	2	PHC3	3	169847254	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	9691417	169847254	28175176	65	38871										
PLD1	0	genome.wustl.edu	37	chr3	171442510	171442510	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttgaccatctgtagcaggctCttccctgaccacagcaattc	7	14	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	171442510	171442510	C	T	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.734	p.R245K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	239	0	0	79	10	11.24	-	-	-	T	171442510	C	T	171442510	3	4	365	1	0	0	0	0	1	0	0	0	12119	913	32	2	2570	2	PLD1	3	171442510	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1595256	171442510	26579920	66	38872										
ATP13A4	0	genome.wustl.edu	37	chr3	193151690	193151690	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggaacagaaactggtaatttGaaaggctgtttgtctcctga	11	6	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	193151690	193151690	G	C	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	nonsense	c.2786	p.S929*	1.000	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	232	0	0	140	33	19.08	-	-	-	C	193151690	G	C	193151690	4	2	365	1	0	0	0	0	0	1	0	0	1130	1294	45	2	828	2	ATP13A4	3	193151690	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	21709180	193151690	4870740	67	38873										
LRRC15	0	genome.wustl.edu	37	chr3	194081543	194081543	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcctcagggcgatgagggctGagatattgaggaacggggac	17	7	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	194081543	194081543	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.248	p.S83L	0.991	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	89	0	0	63	16	20	-	-	-	A	194081543	G	A	194081543	3	1	365	1	0	0	0	0	1	0	0	0	9036	1294	45	2	1519	2	LRRC15	3	194081543	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	929853	194081543	3940887	68	38874										
ATP13A3	0	genome.wustl.edu	37	chr3	194158079	194158079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	accggcaatggcctcgggcgCtcctttcatgtaggcgtcca	12	14	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	194158079	194158079	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.1960	p.A654T	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	118	0	0	44	11	20	-	-	-	T	194158079	C	T	194158079	3	4	365	1	0	0	0	0	1	0	0	0	1129	797	28	4	1780	4	ATP13A3	3	194158079	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	76536	194158079	3864351	69	38875										
MUC4	0	genome.wustl.edu	37	chr3	195511634	195511634	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggaaaggctggtgacaggaaGagaggtggcgtgacctgtgg	20	5	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	195511634	195511634	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.6817	p.L2273V	0.033	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	328	0	0	263	32	10.85	-	-	-	C	195511634	G	C	195511634	3	2	365	1	0	0	0	0	1	0	0	0	10050	942	33	2		2	MUC4	3	195511634	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1353555	195511634	2510796	70	38876										
DLG1	0	genome.wustl.edu	37	chr3	197023229	197023229	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	attcccacctattaaagcctGaaagaggttgctctgaaata	7	9	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	3	197023229	197023229	G	A	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	nonsense	c.139	p.Q47*	1.000	pfam_L27_1,smart_L27,pirsf_M-assoc_guanylate_kinase,pfscan_L27	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	299	0	0	112	29	20.57	-	-	-	A	197023229	G	A	197023229	4	1	365	1	0	0	0	0	0	1	0	0	4590	1299	45	2	2775	2	DLG1	3	197023229	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1511595	197023229	999201	71	38877										
N4BP2	0	genome.wustl.edu	37	chr4	40124825	40124825	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcatgagaaatggaaagaatCtgtaatggttggtaggcttc	12	4	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	40124825	40124825	C	T	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.4277	p.S1426F	1.000	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	323	0	0	161	33	17.01	-	-	-	T	40124825	C	T	40124825	3	4	365	1	0	0	0	0	1	0	0	0	10182	913	32	2	4307	2	N4BP2	4	40124825	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		40124825	151029451	72	38878										
EPHA5	0	genome.wustl.edu	37	chr4	66201769	66201769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tctttctgccagcaatccagCattaactgatagagagcagc	8	11	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	66201769	66201769	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.2733	p.M911I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	256	0	0	99	14	12.39	-	-	-	T	66201769	C	T	66201769	3	4	365	1	0	0	0	0	1	0	0	0	5207	710	25	4	392	4	EPHA5	4	66201769	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	26076944	66201769	124952507	73	38879										
UBA6	0	genome.wustl.edu	37	chr4	68539460	68539460	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caaaagtcattgatcttcttCtgcaatggaagtttcatctc	6	9	6	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	68539460	68539460	C	G	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.501	p.Q167H	0.998	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	186	0	0	71	15	17.44	-	-	-	G	68539460	C	G	68539460	3	3	365	1	0	0	0	0	1	0	0	0	16929	912	32	2	2765	2	UBA6	4	68539460	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2337691	68539460	122614816	74	38880										
PPEF2	0	genome.wustl.edu	37	chr4	76811237	76811237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cactgcatttcttcatctcgGagtcctgggcgaatctgtcc	9	13	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	76811237	76811237	G	C	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	missense	c.290	p.S97C	0.004	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PPP_dom	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	369	0	0	146	25	14.62	-	-	-	C	76811237	G	C	76811237	3	2	365	1	0	0	0	0	1	0	0	0	12381	1174	41	2	2023	2	PPEF2	4	76811237	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	8271777	76811237	114343039	75	38881										
FRAS1	0	genome.wustl.edu	37	chr4	79328836	79328836	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggggaggtggtccttctagtGaatatgcctgcagacagccc	14	10	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	79328836	79328836	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	silent	c.4149	p.V1383	0.989	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	96	0	0	87	14	13.86	-	-	-	A	79328836	G	A	79328836	2	1	365	1	0	0	0	0	0	0	0	1	6090	1277	45	2		2	FRAS1	4	79328836	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2517599	79328836	111825440	76	38882										
WDFY3	0	genome.wustl.edu	37	chr4	85674919	85674919	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcacacaggaagtcagggctCatccacatggaggcaaggtc	13	11	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	85674919	85674919	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.5670	p.M1890I	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	168	0	0	101	21	17.21	-	-	-	T	85674919	C	T	85674919	3	4	365	1	0	0	0	0	1	0	0	0	17367	826	29	2	5046	2	WDFY3	4	85674919	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6346083	85674919	105479357	77	38883										
CXXC4	0	genome.wustl.edu	37	chr4	105412003	105412003	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caactgctgcagacgccacaGttgatgagcctcttgcaggg	12	12	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	105412003	105412003	G	A	SNP	CXXC4	ENST00000394767	human	ensembl	69_37n	-1	known	silent	c.957	p.N319	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772	145	0	0	73	24	24.74	-	-	-	A	105412003	G	A	105412003	2	1	365	1	0	0	0	0	0	0	0	1	4129	1020	36	4		4	CXXC4	4	105412003	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	19737084	105412003	85742273	78	38884										
TET2	0	genome.wustl.edu	37	chr4	106196474	106196474	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	acttctattccacctcatctCaagctgcaggttcatatttg	5	12	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	106196474	106196474	C	T	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	nonsense	c.4807	p.Q1603*	0.997	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	140	0	0	71	18	20.22	-	-	-	T	106196474	C	T	106196474	4	4	365	1	0	0	0	0	0	1	0	0	15865	827	29	2	4930	2	TET2	4	106196474	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	784471	106196474	84957802	79	38885										
C4orf21	0	genome.wustl.edu	37	chr4	113540297	113540297	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gctcttcatctcagcacactCttcctgttgaattaggtact	6	12	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	113540297	113540297	C	G	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.901	p.E301Q	0.024	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	109	0	0	38	8	17.39	-	-	-	G	113540297	C	G	113540297	3	3	365	1	0	0	0	0	1	0	0	0	2275	922	32	2	5505	2	C4orf21	4	113540297	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7343823	113540297	77613979	80	38886										
USP53	0	genome.wustl.edu	37	chr4	120190905	120190905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	acatttccagagaatgtgctCtgaaagctattgaacagaaa	8	7	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	120190905	120190905	C	G	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	missense	c.1348	p.L450V	0.942	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	97	0	0	29	9	23.68	-	-	-	G	120190905	C	G	120190905	3	3	365	1	0	0	0	0	1	0	0	0	17181	912	32	2	1390	2	USP53	4	120190905	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6650608	120190905	70963371	81	38887										
USP38	0	genome.wustl.edu	37	chr4	144119005	144119005	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgactttggtttcctcttgtGagacctggtgctcttgcagt	11	10	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	144119005	144119005	G	A	SNP	USP38	ENST00000307017	human	ensembl	69_37n	1	known	silent	c.978	p.V326	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP38	HGNC	ENSG00000170185	425	0	0	101	23	18.55	-	-	-	A	144119005	G	A	144119005	2	1	365	1	0	0	0	0	0	0	0	1	17166	1277	45	2		2	USP38	4	144119005	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	23928100	144119005	47035271	82	38888										
RAPGEF2	0	genome.wustl.edu	37	chr4	160264511	160264511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agaaattcgtcacgttggccGaatggcttcagtgaacatgg	12	8	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	160264511	160264511	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	missense	c.2726	p.R909Q	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	143	0	0	89	16	15.24	-	-	-	A	160264511	G	A	160264511	3	1	365	1	0	0	0	0	1	0	0	0	13127	1058	37	1	2788	1	RAPGEF2	4	160264511	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	16145506	160264511	30889765	83	38889										
FSTL5	0	genome.wustl.edu	37	chr4	162680647	162680647	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tagaacatacaaagtacaatCaaagagatccttgccaagtt	6	8	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	4	162680647	162680647	C	G	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.643	p.D215H	1.000	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	145	0	0	61	9	12.86	-	-	-	G	162680647	C	G	162680647	3	3	365	1	0	0	0	0	1	0	0	0	6129	826	29	2	1944	2	FSTL5	4	162680647	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2416136	162680647	28473629	84	38890										
ZDHHC11	0	genome.wustl.edu	37	chr5	837564	837564	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcttctttgcggttattaatGagatactcaaaggtggtcat	9	6	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	837564	837564	G	C	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	silent	c.816	p.L272	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	307	0	0	156	29	15.59	-	-	-	C	837564	G	C	837564	2	2	365	1	0	0	0	0	0	0	0	1	17697	1277	45	2		2	ZDHHC11	5	837564	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		837564	180077696	85	38891										
PDZD2	0	genome.wustl.edu	37	chr5	32091263	32091263	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgcccaggatctgccttttaGaagaagctggtcagttaagt	11	8	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	32091263	32091263	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.7709	p.R2570K	0.847	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	71	0	0	81	14	14.74	-	-	-	A	32091263	G	A	32091263	3	1	365	1	0	0	0	0	1	0	0	0	11774	942	33	2	7783	2	PDZD2	5	32091263	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	31253699	32091263	148823997	86	38892										
XRCC4	0	genome.wustl.edu	37	chr5	82554427	82554427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagtagaaaaaggagacagcGaatgcaaagaaatcttggga	12	4	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	82554427	82554427	G	A	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.824	p.R275Q	0.983	pfam_DNA_ds_break_repair_XRCC4	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	230	0	0	75	28	27.18	-	-	-	A	82554427	G	A	82554427	3	1	365	1	0	0	0	0	1	0	0	0	17552	1058	37	1	846	1	XRCC4	5	82554427	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	50463164	82554427	98360833	87	38893										
VCAN	0	genome.wustl.edu	37	chr5	82817735	82817735	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caacaatcaaagtcacagttCcaagtgatattaccactgcc	5	12	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	82817735	82817735	C	G	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.3610	p.P1204A	0.645	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	171	0	0	72	15	17.05	-	-	-	G	82817735	C	G	82817735	3	3	365	1	0	0	0	0	1	0	0	0	17235	855	30	2	3632	2	VCAN	5	82817735	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	263308	82817735	98097525	88	38894										
SNCAIP	0	genome.wustl.edu	37	chr5	121785558	121785558	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agacaaacagtagaacgtgtCacgctgcagaaccaactcca	8	12	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	121785558	121785558	C	G	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	silent	c.1752	p.V584	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	222	0	0	86	25	22.52	-	-	-	G	121785558	C	G	121785558	2	3	365	1	0	0	0	0	0	0	0	1	14930	813	29	2		2	SNCAIP	5	121785558	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	38967823	121785558	59129702	89	38895										
EGR1	0	genome.wustl.edu	37	chr5	137802624	137802624	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agcttggtcagtggcctagtGagcatgaccaacccaccggc	12	13	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	137802624	137802624	G	C	SNP	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	silent	c.486	p.V162	1.000	pfam_DUF3446	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	80	0	0	34	7	17.07	-	-	-	C	137802624	G	C	137802624	2	2	365	1	0	0	0	0	0	0	0	1	5006	1277	45	2		2	EGR1	5	137802624	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	16017066	137802624	43112636	90	38896										
PCDHA10	0	genome.wustl.edu	37	chr5	140235680	140235680	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggtccagtgtctgctgctctCgcttcttctcctcgcagcct	9	16	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	140235680	140235680	C	G	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.47	p.S16W	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	119	0	0	83	18	17.65	-	-	-	G	140235680	C	G	140235680	3	3	365	1	0	0	0	0	1	0	0	0	11593	893	31	3	49	3	PCDHA10	5	140235680	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2433056	140235680	40679580	91	38897										
PCDHB1	0	genome.wustl.edu	37	chr5	140432874	140432874	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	attcttggctttcatatcatCtacttaaggccactgacctt	5	11	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	140432874	140432874	C	G	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.1819	p.L607V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	179	0	0	98	22	18.33	-	-	-	G	140432874	C	G	140432874	3	3	365	1	0	0	0	0	1	0	0	0	11607	912	32	2	1821	2	PCDHB1	5	140432874	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	197194	140432874	40482386	92	38898										
SLC6A7	0	genome.wustl.edu	37	chr5	149576681	149576681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atcatcgcctacgtgctcttCtacctcttcgcctccctcac	4	19	5	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	149576681	149576681	C	G	SNP	SLC6A7	ENST00000230671	human	ensembl	69_37n	1	known	missense	c.426	p.F142L	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	126	0	0	55	27	32.93	-	-	-	G	149576681	C	G	149576681	3	3	365	1	0	0	0	0	1	0	0	0	14778	912	32	2	440	2	SLC6A7	5	149576681	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	9143807	149576681	31338579	93	38899										
DCTN4	0	genome.wustl.edu	37	chr5	150135984	150135984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagtccaggtcttacctattCttttttagtttggcttcagc	7	10	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	150135984	150135984	C	G	SNP	DCTN4	ENST00000446090	human	ensembl	69_37n	-1	known	missense	c.201	p.K67N	1.000	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912	140	0	0	35	6	14.63	-	-	-	G	150135984	C	G	150135984	3	3	365	1	0	0	0	0	1	0	0	0	4340	912	32	2	1254	2	DCTN4	5	150135984	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	559303	150135984	30779276	94	38900										
GLRA1	0	genome.wustl.edu	37	chr5	151231107	151231107	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgggaatatacatctgaatCaggtagtaacccatctgccg	9	10	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	151231107	151231107	C	G	SNP	GLRA1	ENST00000455880	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888	139	0	0	91	21	18.75	-	-	-	G	151231107	C	G	151231107	2	3	365	1	0	0	0	0	0	0	0	1	6506	813	29	2		2	GLRA1	5	151231107	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1095123	151231107	29684153	95	38901										
RGS14	0	genome.wustl.edu	37	chr5	176799049	176799049	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagcccatcgggggatccttGaactccaccaccgactcagc	9	17	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	5	176799049	176799049	G	C	SNP	RGS14	ENST00000408923	human	ensembl	69_37n	1	known	missense	c.1674	p.L558F	0.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS14	HGNC	ENSG00000169220	58	0	0	55	8	12.7	-	-	-	C	176799049	G	C	176799049	3	2	365	1	0	0	0	0	1	0	0	0	13381	1281	45	2	1732	2	RGS14	5	176799049	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	25567942	176799049	4116211	96	38902										
RIPK1	0	genome.wustl.edu	37	chr6	3077012	3077012	+	RNA	DEL	G	G	-													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttacagggtacagctctgccGgggggggaaaaagtggtacc							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	3077012	3077012	G	-	DEL	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	50	0	0	31	4	11.43	-	-	-	-	3077012	G	-	3077012	6	5	365	0	1	1	0	1	0	0	0	0	13466	1131	39	0		0	RIPK1	6	3077012	RNA	DEL	G	TCGA-AR-A0TX-01A-11D-A099-09		3077012	168038055	97	38903										
KIF13A	0	genome.wustl.edu	37	chr6	17799620	17799620	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagaatgtgtattgacagaaGacaaaatttgagaggtttaa	10	3	0	5			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	17799620	17799620	G	C	SNP	KIF13A	ENST00000358380	human	ensembl	69_37n	-1	putative	missense	c.848	p.S283C	1.000	NULL	pfam_Kinesin-like,pfam_KIF1B	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF13A	HGNC	ENSG00000137177	142	0	0	86	18	17.31	-	-	-	C	17799620	G	C	17799620	3	2	365	1	0	0	0	0	1	0	0	0	8326	929	33	2	2847	2	KIF13A	6	17799620	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	14722608	17799620	153315447	98	38904										
MRS2	0	genome.wustl.edu	37	chr6	24416704	24416704	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atgaggaagagttgctagaaGagctctgtgtatcaaaatgg	13	4	2	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	24416704	24416704	G	C	SNP	MRS2	ENST00000443868	human	ensembl	69_37n	1	known	missense	c.808	p.E270Q	1.000	NULL	NULL	-	no_errors	MRS2	HGNC	ENSG00000124532	117	0	0	43	11	20.37	-	-	-	C	24416704	G	C	24416704	3	2	365	1	0	0	0	0	1	0	0	0	9923	943	33	2	825	2	MRS2	6	24416704	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	6617084	24416704	146698363	99	38905										
HIST1H3F	0	genome.wustl.edu	37	chr6	26250619	26250619	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agtcctgcgcgatctcacgtAccagacgctggaatggtagc	12	12	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	26250619	26250619	A	G	SNP	HIST1H3F	ENST00000446824	human	ensembl	69_37n	-1	known	missense	c.215	p.V72A	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3F	HGNC	ENSG00000256316	183	0	0	82	27	24.55	-	-	-	G	26250619	A	G	26250619	3	3	365	1	0	0	0	0	1	0	0	0	7211	391	14	5	199	5	HIST1H3F	6	26250619	Missense_Mutation	SNP	A	TCGA-AR-A0TX-01A-11D-A099-09	1833915	26250619	144864448	100	38906										
HIST1H2BI	0	genome.wustl.edu	37	chr6	26273272	26273272	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaggcggtgaccaaggcacaGaagaaggatggcaagaagcg	16	7	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	26273272	26273272	G	A	SNP	HIST1H2BI	ENST00000377733	human	ensembl	69_37n	1	known	silent	c.69	p.Q23	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BI	HGNC	ENSG00000168242	264	0	0	134	18	11.76	-	-	-	A	26273272	G	A	26273272	2	1	365	1	0	0	0	0	0	0	0	1	7199	933	33	2		2	HIST1H2BI	6	26273272	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	22653	26273272	144841795	101	38907										
BTN2A1	0	genome.wustl.edu	37	chr6	26463541	26463541	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	catccggctggagtgcatatCtagagggtggtacccaaagc	13	10	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	26463541	26463541	C	G	SNP	BTN2A1	ENST00000312541	human	ensembl	69_37n	1	known	missense	c.500	p.S167C	0.937	pfam_CD80_C2-set	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A1	HGNC	ENSG00000112763	93	0	0	78	22	22	-	-	-	G	26463541	C	G	26463541	3	3	365	1	0	0	0	0	1	0	0	0	1569	913	32	2	510	2	BTN2A1	6	26463541	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	190269	26463541	144651526	102	38908										
OR2B2	0	genome.wustl.edu	37	chr6	27879431	27879431	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctggattctcaacactgcttGgacaataaaagcatacgata	7	9	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	27879431	27879431	G	C	SNP	OR2B2	ENST00000303324	human	ensembl	69_37n	-1	known	missense	c.667	p.Q223E	0.243	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131	182	0	0	44	18	29.03	-	-	-	C	27879431	G	C	27879431	3	2	365	1	0	0	0	0	1	0	0	0	11062	1357	47	4	410	4	OR2B2	6	27879431	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1415890	27879431	143235636	103	38909										
KIFC1	0	genome.wustl.edu	37	chr6	33365888	33365888	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcccagctgcctctctcagGaagcagactcaagaggaggc	11	13	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	33365888	33365888	G	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.95	p.G32V	0.027	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	174	0	0	142	28	16.47	-	-	-	T	33365888	G	T	33365888	3	4	365	1	0	0	0	0	1	0	0	0	8364	1174	41	2	101	2	KIFC1	6	33365888	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5486457	33365888	137749179	104	38910										
TBCC	0	genome.wustl.edu	37	chr6	42713653	42713653	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaaaagtggctgttctccttCtctacctcctggttctgccg	8	13	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	42713653	42713653	C	G	SNP	TBCC	ENST00000244625	human	ensembl	69_37n	-1	known	missense	c.159	p.E53D	0.993	NULL	pfam_Tubulin-bd_cofactor_C,smart_CARP_motif	-	no_errors	TBCC	HGNC	ENSG00000124659	84	0	0	72	15	17.24	-	-	-	G	42713653	C	G	42713653	3	3	365	1	0	0	0	0	1	0	0	0	15726	912	32	2	885	2	TBCC	6	42713653	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	9347765	42713653	128401414	105	38911										
HMGCLL1	0	genome.wustl.edu	37	chr6	55381378	55381378	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggatattgatgaatgcctttCattacttcagtgtgatcagc	9	7	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	55381378	55381378	C	T	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.411	p.M137I	1.000	pfam_PYR_CT,pfscan_PYR_CT	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	219	0	0	129	28	17.83	-	-	-	T	55381378	C	T	55381378	3	4	365	1	0	0	0	0	1	0	0	0	7281	826	29	2	725	2	HMGCLL1	6	55381378	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	12667725	55381378	115733689	106	38912										
RAB23	0	genome.wustl.edu	37	chr6	57061379	57061379	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gattccctatctgtggtagaGaacacgagcacacaagcctg	10	11	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	57061379	57061379	G	A	SNP	RAB23	ENST00000317483	human	ensembl	69_37n	-1	known	silent	c.267	p.F89	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB23	HGNC	ENSG00000112210	248	0	0	73	22	23.16	-	-	-	A	57061379	G	A	57061379	2	1	365	1	0	0	0	0	0	0	0	1	12993	933	33	2		2	RAB23	6	57061379	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1680001	57061379	114053688	107	38913										
PGM3	0	genome.wustl.edu	37	chr6	83896771	83896771	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcacaccatctattacagatTgtgaaagtttctcactgctg	6	10	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	83896771	83896771	T	G	SNP	PGM3	ENST00000513973	human	ensembl	69_37n	-1	known	missense	c.413	p.Q138P	0.933	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375	110	0	0	47	11	18.97	-	-	-	G	83896771	T	G	83896771	3	3	365	1	0	0	0	0	1	0	0	0	11874	1812	63	5	1255	5	PGM3	6	83896771	Missense_Mutation	SNP	T	TCGA-AR-A0TX-01A-11D-A099-09	26835392	83896771	87218296	108	38914										
NT5E	0	genome.wustl.edu	37	chr6	86176793	86176793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tctaggcactgggaaatcatGaatttgataatggtgtggaa	12	4	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	86176793	86176793	G	C	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	1	known	missense	c.355	p.E119Q	1.000	pfam_Metallo_PEstase_dom	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	442	0	0	108	19	14.96	-	-	-	C	86176793	G	C	86176793	3	2	365	1	0	0	0	0	1	0	0	0	10766	1291	45	2	361	2	NT5E	6	86176793	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2280022	86176793	84938274	109	38915										
MDN1	0	genome.wustl.edu	37	chr6	90406153	90406153	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcctggagctgctgagttctCtcaacccactctcctagggt	9	14	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	90406153	90406153	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.9309	p.E3103	0.991	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	121	0	0	58	18	23.38	-	-	-	T	90406153	C	T	90406153	2	4	365	1	0	0	0	0	0	0	0	1	9486	912	32	2		2	MDN1	6	90406153	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	4229360	90406153	80708914	110	38916										
WASF1	0	genome.wustl.edu	37	chr6	110434565	110434565	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atcaagctgtgtaacactaaCagataaacggtccacacgtt	7	10	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	110434565	110434565	C	G	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.232	p.V78L	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	203	0	0	87	24	21.24	-	-	-	G	110434565	C	G	110434565	3	3	365	1	0	0	0	0	1	0	0	0	17349	478	17	4	1475	4	WASF1	6	110434565	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	20028412	110434565	60680502	111	38917										
DSE	0	genome.wustl.edu	37	chr6	116758321	116758321	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagcagggccccatcactgtCtgcttcctataccaggttgt	9	14	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	116758321	116758321	C	T	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.2747	p.S916F	0.904	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	147	0	0	79	24	23.3	-	-	-	T	116758321	C	T	116758321	3	4	365	1	0	0	0	0	1	0	0	0	4809	913	32	2	2708	2	DSE	6	116758321	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6323756	116758321	54356746	112	38918										
TCF21	0	genome.wustl.edu	37	chr6	134212887	134212887	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tggccgggaaacccgagagtGacctgaaagaagtggtgacc	15	9	0	5			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	134212887	134212887	G	A	SNP	TCF21	ENST00000237316	human	ensembl	69_37n	1	known	missense	c.487	p.D163N	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF21	HGNC	ENSG00000118526	94	0	0	62	15	19.48	-	-	-	A	134212887	G	A	134212887	3	1	365	1	0	0	0	0	1	0	0	0	15786	1290	45	2	493	2	TCF21	6	134212887	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	17454566	134212887	36902180	113	38919										
UTRN	0	genome.wustl.edu	37	chr6	144780060	144780060	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cttgatgagcttgaaaaggtCatcaagacaaaggaggagtg	13	5	2	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	144780060	144780060	C	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.2439	p.V813	0.005	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	57	0	0	33	4	10.81	-	-	-	T	144780060	C	T	144780060	2	4	365	1	0	0	0	0	0	0	0	1	17200	813	29	2		2	UTRN	6	144780060	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	10567173	144780060	26335007	114	38920										
MAP3K4	0	genome.wustl.edu	37	chr6	161507647	161507647	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agcagcagaattcaggctttCagccccagttagagacctcc	9	13	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	161507647	161507647	C	A	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	nonsense	c.2504	p.S835*	0.134	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	130	0	0	65	13	16.67	-	-	-	A	161507647	C	A	161507647	4	1	365	1	0	0	0	0	0	1	0	0	9323	838	29	2	2538	2	MAP3K4	6	161507647	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	16727587	161507647	9607420	115	38921										
GPR31	0	genome.wustl.edu	37	chr6	167570935	167570935	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgagacccccagggccgcctGaggagacagcaggttgacct	14	14	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	6	167570935	167570935	G	C	SNP	GPR31	ENST00000366834	human	ensembl	69_37n	-1	known	missense	c.385	p.Q129E	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR31	HGNC	ENSG00000120436	32	0	0	47	9	16.07	-	-	-	C	167570935	G	C	167570935	3	2	365	1	0	0	0	0	1	0	0	0	6737	1299	45	2	577	2	GPR31	6	167570935	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	6063288	167570935	3544132	116	38922										
DNAH11	0	genome.wustl.edu	37	chr7	21658797	21658797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagagtggaagatgatgtccGaaggattgtggacaaggcgg	17	5	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	21658797	21658797	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.4349	p.R1450Q	0.001	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	179	0	0	80	25	23.81	-	-	-	A	21658797	G	A	21658797	3	1	365	1	0	0	0	0	1	0	0	0	4635	1058	37	1	4443	1	DNAH11	7	21658797	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		21658797	137479866	117	38923										
BMPER	0	genome.wustl.edu	37	chr7	34125658	34125658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccaaaagctcaaatcctggGagtttcagacctgccactcg	9	13	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	34125658	34125658	G	A	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	missense	c.1699	p.E567K	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	89	0	0	53	11	17.19	-	-	-	A	34125658	G	A	34125658	3	1	365	1	0	0	0	0	1	0	0	0	1473	1175	41	2	1749	2	BMPER	7	34125658	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	12466861	34125658	125013005	118	38924										
PKD1L1	0	genome.wustl.edu	37	chr7	47840422	47840422	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caggtggtagaacccacataGagagcagaaatcggtgcagg	14	8	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	47840422	47840422	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.8018	p.S2673F	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	87	0	0	52	12	18.75	-	-	-	A	47840422	G	A	47840422	3	1	365	1	0	0	0	0	1	0	0	0	12038	942	33	2	547	2	PKD1L1	7	47840422	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	13714764	47840422	111298241	119	38925										
POM121L12	0	genome.wustl.edu	37	chr7	53104112	53104112	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggagcctcagtttttgtgatGatgcttggccttccgtgctg	13	9	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	53104112	53104112	G	A	SNP	POM121L12	ENST00000408890	human	ensembl	69_37n	1	known	missense	c.748	p.D250N	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900	62	0	0	48	12	20	-	-	-	A	53104112	G	A	53104112	3	1	365	1	0	0	0	0	1	0	0	0	12315	1290	45	2	750	2	POM121L12	7	53104112	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5263690	53104112	106034551	120	38926										
PION	0	genome.wustl.edu	37	chr7	77011930	77011930	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	taacagatggttctctggaaGaggatgactttcaatatgtg	11	5	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	77011930	77011930	G	C	SNP	PION	ENST00000257626	human	ensembl	69_37n	-1	known	missense	c.487	p.L163V	0.005	NULL	NULL	-	no_errors	PION	HGNC	ENSG00000186088	149	0	0	52	17	24.64	-	-	-	C	77011930	G	C	77011930	3	2	365	1	0	0	0	0	1	0	0	0	12008	942	33	2	2177	2	PION	7	77011930	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	23907818	77011930	82126733	121	38927										
SAMD9L	0	genome.wustl.edu	37	chr7	92763064	92763064	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	acctccacagcctggatgatGataaagattgatgatttttg	9	7	0	5			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	92763064	92763064	G	A	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.2221	p.H741Y	1.000	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	101	1	0.98	49	7	12.5	-	-	-	A	92763064	G	A	92763064	3	1	365	1	0	0	0	0	1	0	0	0	13913	1290	45	2	2537	2	SAMD9L	7	92763064	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	15751134	92763064	66375599	122	38928										
CFTR	0	genome.wustl.edu	37	chr7	117188830	117188830	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagatattaatttcaagataGaaagaggacagttgttggcg	11	3	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	117188830	117188830	G	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.1345	p.E449Q	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	235	0	0	121	36	22.93	-	-	-	C	117188830	G	C	117188830	3	2	365	1	0	0	0	0	1	0	0	0	3323	943	33	2	1383	2	CFTR	7	117188830	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	24425766	117188830	41949833	123	38929										
ATP6V0E2	0	genome.wustl.edu	37	chr7	149575859	149575859	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgtgcgcttcctgtgggagtGacccgccgcccccgacccag	13	18	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	149575859	149575859	G	A	SNP	ATP6V0E2	ENST00000456496	human	ensembl	69_37n	1	known	silent	c.392	p.*131	1.000	NULL	pfam_ATPase_V0-cplx_esu	-	no_errors	ATP6V0E2	HGNC	ENSG00000171130	45	0	0	29	14	31.82	-	-	-	A	149575859	G	A	149575859	2	1	365	1	0	0	0	0	0	0	0	1	1180	1285	45	2		2	ATP6V0E2	7	149575859	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	32387029	149575859	9562804	124	38930										
GIMAP1	0	genome.wustl.edu	37	chr7	150417814	150417814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aggccctgaggagcggctccGgcgggtggcggagcgcgtgg	22	11	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	150417814	150417814	G	A	SNP	GIMAP1	ENST00000307194	human	ensembl	69_37n	1	known	missense	c.722	p.R241Q	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP1	HGNC	ENSG00000213203	25	0	0	21	5	19.23	-	-	-	A	150417814	G	A	150417814	3	1	365	1	0	0	0	0	1	0	0	0	6431	1116	39	1	728	1	GIMAP1	7	150417814	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	841955	150417814	8720849	125	38931										
MLL3	0	genome.wustl.edu	37	chr7	151945354	151945354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tttctttctgttccttttctCcttgtagcctttctataacc	3	12	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	7	151945354	151945354	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.2165	p.G722E	0.556	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	231	0	0	119	15	11.19	-	-	-	T	151945354	C	T	151945354	3	4	365	1	0	0	0	0	1	0	0	0	9693	855	30	2	12754	2	MLL3	7	151945354	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1527540	151945354	7193309	126	38932										
ADAM18	0	genome.wustl.edu	37	chr8	39495172	39495172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttacaaagatttttggcatgGaaacgggactatctcatcct	8	8	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	39495172	39495172	G	T	SNP	ADAM18	ENST00000265707	human	ensembl	69_37n	1	known	missense	c.777	p.W259C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619	253	0	0	71	22	23.66	-	-	-	T	39495172	G	T	39495172	3	4	365	1	0	0	0	0	1	0	0	0	239	1183	41	2	811	2	ADAM18	8	39495172	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		39495172	106868850	127	38933										
TGS1	0	genome.wustl.edu	37	chr8	56699009	56699010	+	Frame_Shift_Ins	INS	-	-	CA													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agacagaaaatcctccagttINSgaaaacacattatctccaaa							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	56699009	56699010	-	CA	INS	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	frame_shift_ins	c.552_553	p.E184fs	0.131:0.995	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	119	0	0	69	14	16.87	-	-	-	CA	56699010	-	CA	56699009	7	5	365	1	0	1	1	0	0	0	0	0	15932	1799	63	0	566	0	TGS1	8	56699009	Frame_Shift_Ins	INS	-	TCGA-AR-A0TX-01A-11D-A099-09	17203837	56699009	89665013	128	38934										
MTFR1	0	genome.wustl.edu	37	chr8	66616961	66616961	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atcaaggccaccccttcaggAtgaccttcttttctttgaga	7	12	4	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	66616961	66616961	A	G	SNP	MTFR1	ENST00000262146	human	ensembl	69_37n	1	known	missense	c.314	p.D105G	0.275	pfam_Mtfr1	pfam_Mtfr1	-	no_errors	MTFR1	HGNC	ENSG00000066855	89	0	0	28	9	24.32	-	-	-	G	66616961	A	G	66616961	3	3	365	1	0	0	0	0	1	0	0	0	9997	333	12	5	328	5	MTFR1	8	66616961	Missense_Mutation	SNP	A	TCGA-AR-A0TX-01A-11D-A099-09	9917952	66616961	79747061	129	38935										
NCOA2	0	genome.wustl.edu	37	chr8	71068737	71068737	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccgtcagctctctcactgctCacggccgggggcaggttggg	15	14	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	71068737	71068737	C	T	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.1863	p.V621	0.014	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	202	0	0	66	20	22.99	-	-	-	T	71068737	C	T	71068737	2	4	365	1	0	0	0	0	0	0	0	1	10301	813	29	2		2	NCOA2	8	71068737	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	4451776	71068737	75295285	130	38936										
ENPP2	0	genome.wustl.edu	37	chr8	120602768	120602768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tagcattgttgctaaatttgGatcgaattcttcctagagtt	8	6	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	120602768	120602768	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1340	p.S447F	0.995	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	184	1	0.54	55	14	20.29	-	-	-	A	120602768	G	A	120602768	3	1	365	1	0	0	0	0	1	0	0	0	5167	1174	41	2	1538	2	ENPP2	8	120602768	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	49534031	120602768	25761254	131	38937										
TSTA3	0	genome.wustl.edu	37	chr8	144696575	144696575	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcgtggggcccgaagacgttGgtggggatgacagcggtgaa	19	7	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	8	144696575	144696575	G	C	SNP	TSTA3	ENST00000425753	human	ensembl	69_37n	-1	known	silent	c.513	p.T171	1.000	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522	145	0	0	102	18	15	-	-	-	C	144696575	G	C	144696575	2	2	365	1	0	0	0	0	0	0	0	1	16770	1335	47	4		4	TSTA3	8	144696575	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	24093807	144696575	1667447	132	38938										
GLIS3	0	genome.wustl.edu	37	chr9	4286347	4286347	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggctcggatggcaggaatgtGatgaccactgaccatcctag	13	10	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	4286347	4286347	G	A	SNP	GLIS3	ENST00000381971	human	ensembl	69_37n	-1	known	missense	c.79	p.H27Y	0.976	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249	77	0	0	66	9	12	-	-	-	A	4286347	G	A	4286347	3	1	365	1	0	0	0	0	1	0	0	0	6499	1290	45	2	2753	2	GLIS3	9	4286347	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		4286347	136927084	133	38939										
CD274	0	genome.wustl.edu	37	chr9	5466805	5466805	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgaaaaaatgtggcatccaaGatacaaactcaaagaagcaa	7	7	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	5466805	5466805	G	C	SNP	CD274	ENST00000381577	human	ensembl	69_37n	1	known	missense	c.826	p.D276H	0.003	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD274	HGNC	ENSG00000120217	238	0	0	82	13	13.68	-	-	-	C	5466805	G	C	5466805	3	2	365	1	0	0	0	0	1	0	0	0	3020	942	33	2	844	2	CD274	9	5466805	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1180458	5466805	135746626	134	38940										
PTPRD	0	genome.wustl.edu	37	chr9	8485307	8485307	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cttcattactgctttgacatGaaaattttttgcaaacactg	5	8	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	8485307	8485307	G	C	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.3073	p.H1025D	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	176	0	0	70	16	18.6	-	-	-	C	8485307	G	C	8485307	3	2	365	1	0	0	0	0	1	0	0	0	12882	1290	45	2	2802	2	PTPRD	9	8485307	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3018502	8485307	132728124	135	38941										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18662042	18662042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaacccaaacccaagcttcaGgagtgcaacttggatccttg	8	12	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	18662042	18662042	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	silent	c.1056	p.Q352	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	124	0	0	57	14	19.72	-	-	-	A	18662042	G	A	18662042	2	1	365	1	0	0	0	0	0	0	0	1	274	991	35	4		4	ADAMTSL1	9	18662042	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	10176735	18662042	122551389	136	38942										
VCP	0	genome.wustl.edu	37	chr9	35059573	35059573	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagtgggatgtagatgagctGatcaagacggccaggtctga	15	6	2	5			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	35059573	35059573	G	A	SNP	VCP	ENST00000358901	human	ensembl	69_37n	-1	known	nonsense	c.1921	p.Q641*	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase,tigrfam_ATPase_AAA_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	199	0	0	63	16	20.25	-	-	-	A	35059573	G	A	35059573	4	1	365	1	0	0	0	0	0	1	0	0	17237	1299	45	2	515	2	VCP	9	35059573	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	16397531	35059573	106153858	137	38943										
PAX5	0	genome.wustl.edu	37	chr9	36923468	36923468	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagccagcgaggccatggctGaatactctgtggtctgaaag	13	10	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	36923468	36923468	G	A	SNP	PAX5	ENST00000358127	human	ensembl	69_37n	-1	known	missense	c.794	p.S265L	1.000	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	46	0	0	34	11	24.44	-	-	-	A	36923468	G	A	36923468	3	1	365	1	0	0	0	0	1	0	0	0	11555	1294	45	2	397	2	PAX5	9	36923468	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1863895	36923468	104289963	138	38944										
SPIN1	0	genome.wustl.edu	37	chr9	91090081	91090081	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tatgccaaagaagatggctcGaaaaggactggcatggtcat	12	7	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	91090081	91090081	G	A	SNP	SPIN1	ENST00000375859	human	ensembl	69_37n	1	known	silent	c.678	p.S226	0.006	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN1	HGNC	ENSG00000106723	99	0	0	57	8	12.31	-	-	-	A	91090081	G	A	91090081	2	1	365	1	0	0	0	0	0	0	0	1	15143	1045	37	1		1	SPIN1	9	91090081	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	54166613	91090081	50123350	139	38945										
S1PR3	0	genome.wustl.edu	37	chr9	91616385	91616385	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgcgacctgctggccggcatCgcttacaaggtcaacattct	10	13	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	91616385	91616385	C	G	SNP	S1PR3	ENST00000358157	human	ensembl	69_37n	1	known	missense	c.270	p.I90M	0.014	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG3_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694	40	0	0	37	9	19.57	-	-	-	G	91616385	C	G	91616385	3	3	365	1	0	0	0	0	1	0	0	0	13881	874	31	3	272	3	S1PR3	9	91616385	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	526304	91616385	49597046	140	38946										
ODF2	0	genome.wustl.edu	37	chr9	131262505	131262505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccaccttcctgactagctctCccatccgctcccgatctcct	4	21	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	131262505	131262505	C	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.2461	p.P821T	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	189	0	0	78	18	18.75	-	-	-	A	131262505	C	A	131262505	3	1	365	1	0	0	0	0	1	0	0	0	10900	855	30	2	2657	2	ODF2	9	131262505	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	39646120	131262505	9950926	141	38947										
ZDHHC12	0	genome.wustl.edu	37	chr9	131484019	131484019	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttgcgctctcccacacagttCtccatccaggggcagtggtg	11	14	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	9	131484019	131484019	C	T	SNP	ZDHHC12	ENST00000372667	human	ensembl	69_37n	-1	known	silent	c.435	p.E145	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC12	HGNC	ENSG00000160446	116	0	0	88	12	11.88	-	-	-	T	131484019	C	T	131484019	2	4	365	1	0	0	0	0	0	0	0	1	17698	912	32	2		2	ZDHHC12	9	131484019	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	221514	131484019	9729412	142	38948										
DCLRE1C	0	genome.wustl.edu	37	chr10	14977484	14977484	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcccccggagtgcagaagctCcattctagcagcttctcctt	9	15	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	14977484	14977484	C	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	62	0	0	52	11	17.19	-	-	-	G	14977484	C	G	14977484	3	3	365	1	0	0	0	0	1	0	0	0	4327	864	30	2	1672	2	DCLRE1C	10	14977484	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		14977484	120557263	143	38949										
YME1L1	0	genome.wustl.edu	37	chr10	27412521	27412521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcccacacccacaaacatctCatcaaattcggatccagaag	4	15	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	27412521	27412521	C	G	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	missense	c.1228	p.E410Q	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	187	0	0	109	21	16.15	-	-	-	G	27412521	C	G	27412521	3	3	365	1	0	0	0	0	1	0	0	0	17584	835	29	2	1133	2	YME1L1	10	27412521	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	12435037	27412521	108122226	144	38950										
FAM13C	0	genome.wustl.edu	37	chr10	61029863	61029863	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcccatctttgtggactggtGaggggtctgggcaaatgaga	16	7	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	61029863	61029863	G	T	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	nonsense	c.599	p.S200*	0.001	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	72	0	0	84	22	20.75	-	-	-	T	61029863	G	T	61029863	4	4	365	1	0	0	0	0	0	1	0	0	5494	1294	45	2	1190	2	FAM13C	10	61029863	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	33617342	61029863	74504884	145	38951										
ANK3	0	genome.wustl.edu	37	chr10	62038849	62038849	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggcttctctctgcagcagctCagaaacaacctctacatggc	8	14	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	62038849	62038849	C	G	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.274	p.E92Q	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	151	0	0	75	18	19.35	-	-	-	G	62038849	C	G	62038849	3	3	365	1	0	0	0	0	1	0	0	0	622	835	29	2	13356	2	ANK3	10	62038849	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1008986	62038849	73495898	146	38952										
FAM35A	0	genome.wustl.edu	37	chr10	88946909	88946909	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtgtagaatcaaagctgataGagaagattcttctcaacatt	8	6	3	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	88946909	88946909	G	A	SNP	FAM35A	ENST00000298786	human	ensembl	69_37n	1	known	missense	c.2467	p.E823K	0.992	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376	365	0	0	91	21	18.58	-	-	-	A	88946909	G	A	88946909	3	1	365	1	0	0	0	0	1	0	0	0	5599	943	33	2	2282	2	FAM35A	10	88946909	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	26908060	88946909	46587838	147	38953										
C10orf76	0	genome.wustl.edu	37	chr10	103699622	103699622	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atacttctcattccttacctGatattaaccaatgcatgggt	5	10	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	10	103699622	103699622	G	A	SNP	C10orf76	ENST00000370033	human	ensembl	69_37n	-1	known	silent	c.1779	p.I593	1.000	pfam_DUF1741	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	157	0	0	76	16	17.39	-	-	-	A	103699622	G	A	103699622	2	1	365	1	0	0	0	0	0	0	0	1	1626	1280	45	2		2	C10orf76	10	103699622	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	14752713	103699622	31835125	148	38954										
RIC8A	0	genome.wustl.edu	37	chr11	209437	209437	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agctgctggtctccgtcctgGaacagggcttgccaccctcc	11	16	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	209437	209437	G	T	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	nonsense	c.163	p.E55*	1.000	superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	67	0	0	41	13	24.07	-	-	-	T	209437	G	T	209437	4	4	365	1	0	0	0	0	0	1	0	0	13439	1175	41	2	173	2	RIC8A	11	209437	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		209437	134797079	149	38955										
CEND1	0	genome.wustl.edu	37	chr11	788469	788469	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tccttcttcgagggcttggtCaagggggctttcccatcggc	13	12	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	788469	788469	C	T	SNP	CEND1	ENST00000330106	human	ensembl	69_37n	-1	known	silent	c.108	p.L36	0.000	NULL	NULL	-	no_errors	CEND1	HGNC	ENSG00000184524	71	0	0	30	8	21.05	-	-	-	T	788469	C	T	788469	2	4	365	1	0	0	0	0	0	0	0	1	3254	825	29	2		2	CEND1	11	788469	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	579032	788469	134218047	150	38956										
FAM160A2	0	genome.wustl.edu	37	chr11	6232761	6232761	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gattgaggggcccacagcctGagatgagagggccagatcct	15	10	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	6232761	6232761	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.2936	p.S979L	0.991	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	55	0	0	26	6	18.75	-	-	-	A	6232761	G	A	6232761	3	1	365	1	0	0	0	0	1	0	0	0	5509	1294	45	2	28	2	FAM160A2	11	6232761	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5444292	6232761	128773755	151	38957										
DCHS1	0	genome.wustl.edu	37	chr11	6661191	6661191	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tagagggggcaggccaccatCtgtggccaccacaatcagct	12	13	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	6661191	6661191	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.1654	p.D552N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	113	0	0	55	18	24.66	-	-	-	T	6661191	C	T	6661191	3	4	365	1	0	0	0	0	1	0	0	0	4318	913	32	2	8322	2	DCHS1	11	6661191	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	428430	6661191	128345325	152	38958										
USH1C	0	genome.wustl.edu	37	chr11	17531162	17531162	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atgaggcgctcacatggccaGataagggaaggacagggggc	17	8	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	17531162	17531162	G	A	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.1754	p.S585F	0.084	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	18	0	0	6	4	40	-	-	-	A	17531162	G	A	17531162	3	1	365	1	0	0	0	0	1	0	0	0	17131	942	33	2	985	2	USH1C	11	17531162	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	10869971	17531162	117475354	153	38959										
C11orf49	0	genome.wustl.edu	37	chr11	47178576	47178576	+	Frame_Shift_Del	DEL	T	T	-													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccacccccacggttccagaaTtcctggacagtgtggctgcc							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	47178576	47178576	T	-	DEL	C11orf49	ENST00000378615	human	ensembl	69_37n	1	known	frame_shift_del	c.454	p.F152fs	1.000	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	66	0	0	48	9	15.52	-	-	-	-	47178576	T	-	47178576	7	5	365	1	0	1	0	1	0	0	0	0	1656	1493	52	0	476	0	C11orf49	11	47178576	Frame_Shift_Del	DEL	T	TCGA-AR-A0TX-01A-11D-A099-09	29647414	47178576	87827940	154	38960										
SLC39A13	0	genome.wustl.edu	37	chr11	47434989	47434989	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	actgctgctgccgccgcgctCaatggaggccactgtctggc	13	15	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	47434989	47434989	C	G	SNP	SLC39A13	ENST00000362021	human	ensembl	69_37n	1	known	silent	c.576	p.L192	0.957	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915	73	0	0	32	9	21.95	-	-	-	G	47434989	C	G	47434989	2	3	365	1	0	0	0	0	0	0	0	1	14705	813	29	2		2	SLC39A13	11	47434989	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	256413	47434989	87571527	155	38961										
OR5W2	0	genome.wustl.edu	37	chr11	55681414	55681414	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atgatataacaataagaaatGaaaactcctgaaatggtact	6	5	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	55681414	55681414	G	A	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	silent	c.645	p.F215	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	66	0	0	54	16	22.86	-	-	-	A	55681414	G	A	55681414	2	1	365	1	0	0	0	0	0	0	0	1	11258	1281	45	2		2	OR5W2	11	55681414	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	8246425	55681414	79325102	156	38962										
STX3	0	genome.wustl.edu	37	chr11	59554516	59554516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctttctgattatagattgagGaaactcggcttaacattgac	8	7	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	59554516	59554516	G	A	SNP	STX3	ENST00000337979	human	ensembl	69_37n	1	known	missense	c.121	p.E41K	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX3	HGNC	ENSG00000166900	211	0	0	55	9	14.06	-	-	-	A	59554516	G	A	59554516	3	1	365	1	0	0	0	0	1	0	0	0	15437	1175	41	2	131	2	STX3	11	59554516	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3873102	59554516	75452000	157	38963										
STX3	0	genome.wustl.edu	37	chr11	59554572	59554572	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtagaggaggctaagaaactCtacagtatcattctctctgc	9	9	4	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	59554572	59554572	C	G	SNP	STX3	ENST00000337979	human	ensembl	69_37n	1	known	silent	c.177	p.L59	0.953	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX3	HGNC	ENSG00000166900	221	0	0	61	21	25.61	-	-	-	G	59554572	C	G	59554572	2	3	365	1	0	0	0	0	0	0	0	1	15437	900	32	2		2	STX3	11	59554572	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	56	59554572	75451944	158	38964										
PLAC1L	0	genome.wustl.edu	37	chr11	59814505	59814505	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgactttcagacaacagcaGaagagttaggattattatct	8	7	2	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	59814505	59814505	G	A	SNP	PLAC1L	ENST00000278855	human	ensembl	69_37n	1	known	missense	c.436	p.E146K	0.999	NULL	NULL	-	no_errors	PLAC1L	HGNC	ENSG00000149507	192	0	0	81	21	20.39	-	-	-	A	59814505	G	A	59814505	3	1	365	1	0	0	0	0	1	0	0	0	12087	943	33	2	450	2	PLAC1L	11	59814505	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	259933	59814505	75192011	159	38965										
DDB1	0	genome.wustl.edu	37	chr11	61099077	61099077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcccacctctttgacgggccGaagcccctcggcggtgacca	12	17	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	61099077	61099077	G	A	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.148	p.R50W	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	190	0	0	81	33	28.7	-	-	-	A	61099077	G	A	61099077	3	1	365	1	0	0	0	0	1	0	0	0	4354	1057	37	1	3378	1	DDB1	11	61099077	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1284572	61099077	73907439	160	38966										
RTN3	0	genome.wustl.edu	37	chr11	63486546	63486546	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caagaacccaaatggggtatCaagtagggaggctaaaactg	12	7	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	63486546	63486546	C	A	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	nonsense	c.572	p.S191*	0.002	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	92	0	0	68	12	15	-	-	-	A	63486546	C	A	63486546	4	1	365	1	0	0	0	0	0	1	0	0	13813	838	29	2	582	2	RTN3	11	63486546	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2387469	63486546	71519970	161	38967										
KLC2	0	genome.wustl.edu	37	chr11	66026285	66026285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccattgagcttgggctggggGaggcccaggtaggtcagtct	17	9	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	66026285	66026285	G	A	SNP	KLC2	ENST00000316924	human	ensembl	69_37n	1	known	missense	c.220	p.E74K	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	27	0	0	24	5	17.24	-	-	-	A	66026285	G	A	66026285	3	1	365	1	0	0	0	0	1	0	0	0	8387	1175	41	2	222	2	KLC2	11	66026285	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2539739	66026285	68980231	162	38968										
CHCHD8	0	genome.wustl.edu	37	chr11	73584201	73584201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcttgcctcctctgcagctCctcttgccgcctcgcctgct	7	19	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	73584201	73584201	C	T	SNP	CHCHD8	ENST00000541455	human	ensembl	69_37n	-1	known	missense	c.250	p.E84K	1.000	NULL	NULL	-	no_errors	CHCHD8	HGNC	ENSG00000181924	72	0	0	38	12	24	-	-	-	T	73584201	C	T	73584201	3	4	365	1	0	0	0	0	1	0	0	0	3351	864	30	2	44	2	CHCHD8	11	73584201	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7557916	73584201	61422315	163	38969										
GPR83	0	genome.wustl.edu	37	chr11	94129617	94129617	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcagtgctgagacgtgcagtGagcagtactgggcaaagcgg	16	8	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	94129617	94129617	G	C	SNP	GPR83	ENST00000243673	human	ensembl	69_37n	-1	known	nonsense	c.461	p.S154*	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	98	0	0	64	23	26.44	-	-	-	C	94129617	G	C	94129617	4	2	365	1	0	0	0	0	0	1	0	0	6763	1294	45	2	822	2	GPR83	11	94129617	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	20545416	94129617	40876899	164	38970										
RDX	0	genome.wustl.edu	37	chr11	110104054	110104054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	taccccttcatttgataattCagcactagcttcagcattat	4	11	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	110104054	110104054	C	G	SNP	RDX	ENST00000530749	human	ensembl	69_37n	-1	known	missense	c.1495	p.E499Q	1.000	pirsf_ERM,pfam_ERM_C,superfamily_Moesin	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710	460	0	0	102	22	17.74	-	-	-	G	110104054	C	G	110104054	3	3	365	1	0	0	0	0	1	0	0	0	13281	835	29	2	264	2	RDX	11	110104054	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	15974437	110104054	24902462	165	38971										
MLL	0	genome.wustl.edu	37	chr11	118344572	118344572	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggaaaaagggatcagaaattCagagtagttctgctttgtat	11	4	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	118344572	118344572	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	nonsense	c.2698	p.Q900*	0.998	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	192	0	0	93	18	16.07	-	-	-	T	118344572	C	T	118344572	4	4	365	1	0	0	0	0	0	1	0	0	9691	827	29	2	2708	2	MLL	11	118344572	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	8240518	118344572	16661944	166	38972										
HEPACAM	0	genome.wustl.edu	37	chr11	124805830	124805830	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cctcctacctgtctggatcaGaagaaggtagacaaaaggag	11	9	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	124805830	124805830	G	A	SNP	HEPACAM	ENST00000298251	human	ensembl	69_37n	-1	known	silent	c.73	p.L25	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM	HGNC	ENSG00000165478	105	0	0	87	23	20.91	-	-	-	A	124805830	G	A	124805830	2	1	365	1	0	0	0	0	0	0	0	1	7103	933	33	2		2	HEPACAM	11	124805830	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	6461258	124805830	10200686	167	38973										
HYLS1	0	genome.wustl.edu	37	chr11	125769890	125769890	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttaagccgaaaccggggcaaGacagaccgggtagcccggta	14	11	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	11	125769890	125769890	G	C	SNP	HYLS1	ENST00000356438	human	ensembl	69_37n	1	known	missense	c.627	p.K209N	0.125	NULL	NULL	-	no_errors	HYLS1	HGNC	ENSG00000198331	124	0	0	73	17	18.89	-	-	-	C	125769890	G	C	125769890	3	2	365	1	0	0	0	0	1	0	0	0	7523	933	33	2	629	2	HYLS1	11	125769890	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	964060	125769890	9236626	168	38974										
EPS8	0	genome.wustl.edu	37	chr12	15774268	15774268	+	Frame_Shift_Del	DEL	C	C	-													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaattagtgactgcttccttCatcaaaagattccactcctg							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	15774268	15774268	C	-	DEL	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	frame_shift_del	c.2452	p.E818fs	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	271	0	0	72	15	16.67	-	-	-	-	15774268	C	-	15774268	7	5	365	1	0	1	0	1	0	0	0	0	5231	835	29	0	20	0	EPS8	12	15774268	Frame_Shift_Del	DEL	C	TCGA-AR-A0TX-01A-11D-A099-09		15774268	118077627	169	38975	317	2								
EPS8	0	genome.wustl.edu	37	chr12	15774271	15774271	+	Missense_Mutation	SNP	C	C	T													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttagtgactgcttccttcatCaaaagattccactcctgaat							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	15774271	15774271	C	T	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	missense	c.2449	p.D817N	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	271	0	0	71	18	19.78	-	-	-	T	15774271	C	T	15774271	3	4	365	1	0	0	0	0	1	0	0	0	5231	826	29	2	23	2	EPS8	12	15774271	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	3	15774271	118077624	170	38976	317	2								
ABCC9	0	genome.wustl.edu	37	chr12	22086720	22086720	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aacttagatcacttacgagtCtgaaacaatgccttctgcta	6	10	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	22086720	22086720	C	G	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.280	p.D94H	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	183	0	0	90	15	14.15	-	-	-	G	22086720	C	G	22086720	3	3	365	1	0	0	0	0	1	0	0	0	59	913	32	2	4659	2	ABCC9	12	22086720	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6312449	22086720	111765175	171	38977										
FGD4	0	genome.wustl.edu	37	chr12	32791666	32791666	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gagaagtcaaaaccttggcaGaaagcttggtgtgtgatccc	12	8	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	32791666	32791666	G	A	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	silent	c.1980	p.Q660	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	284	0	0	106	33	23.74	-	-	-	A	32791666	G	A	32791666	2	1	365	1	0	0	0	0	0	0	0	1	5881	933	33	2		2	FGD4	12	32791666	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	10704946	32791666	101060229	172	38978										
ARID2	0	genome.wustl.edu	37	chr12	46245928	46245928	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agcatctgggaaacagaactCagaacaaatagacatgcaag	9	8	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	46245928	46245928	C	G	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	nonsense	c.4022	p.S1341*	0.797	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	88	0	0	56	9	13.85	-	-	-	G	46245928	C	G	46245928	4	3	365	1	0	0	0	0	0	1	0	0	917	838	29	2	4080	2	ARID2	12	46245928	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	13454262	46245928	87605967	173	38979										
RDH5	0	genome.wustl.edu	37	chr12	56118164	56118164	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gacccggacctaaccaaggtGagccgatgcctggagcatgc	13	13	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	56118164	56118164	G	A	SNP	RDH5	ENST00000257895	human	ensembl	69_37n	1	known	silent	c.792	p.V264	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437	105	0	0	99	23	18.85	-	-	-	A	56118164	G	A	56118164	2	1	365	1	0	0	0	0	0	0	0	1	13278	1277	45	2		2	RDH5	12	56118164	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	9872236	56118164	77733731	174	38980										
LRIG3	0	genome.wustl.edu	37	chr12	59274492	59274492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggtggtatactccatcacctCgccaccttgggcccggaggt	12	14	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	59274492	59274492	C	T	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.1672	p.E558K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	161	0	0	210	28	11.76	-	-	-	T	59274492	C	T	59274492	3	4	365	1	0	0	0	0	1	0	0	0	9012	893	31	1	1715	1	LRIG3	12	59274492	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	3156328	59274492	74577403	175	38981										
ZFC3H1	0	genome.wustl.edu	37	chr12	72026676	72026676	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaaccctcaccccaaagcgaTcttgttccagtttacgtttt	5	13	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	72026676	72026676	T	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.2807	p.D936G	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	284	0	0	141	78	35.62	-	-	-	C	72026676	T	C	72026676	3	2	365	1	0	0	0	0	1	0	0	0	17729	1435	50	5	3250	5	ZFC3H1	12	72026676	Missense_Mutation	SNP	T	TCGA-AR-A0TX-01A-11D-A099-09	12752184	72026676	61825219	176	38982										
TBC1D15	0	genome.wustl.edu	37	chr12	72307641	72307641	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgagtgatttactttcccctCttttatatgtgatggaaaat	7	6	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	72307641	72307641	C	G	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	missense	c.1387	p.L463V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	290	0	0	116	13	10	-	-	-	G	72307641	C	G	72307641	3	3	365	1	0	0	0	0	1	0	0	0	15696	913	32	2	1561	2	TBC1D15	12	72307641	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	280965	72307641	61544254	177	38983										
SLC24A6	0	genome.wustl.edu	37	chr12	113754439	113754439	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccgtggtctcctggtagaaGaacagcggccggtactcatc	13	12	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	113754439	113754439	G	A	SNP	SLC24A6	ENST00000550672	human	ensembl	69_37n	-1	known	missense	c.494	p.S165F	0.004	NULL	pfam_NaCa_Exmemb	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC24A6	HGNC	ENSG00000089060	121	0	0	44	13	22.81	-	-	-	A	113754439	G	A	113754439	3	1	365	1	0	0	0	0	1	0	0	0	14559	933	33	2	897	2	SLC24A6	12	113754439	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	41446798	113754439	20097456	178	38984										
UNC119B	0	genome.wustl.edu	37	chr12	121151105	121151105	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgtaaacccgaagacaacatCtacagtattgatttcacccg	6	11	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	121151105	121151105	C	G	SNP	UNC119B	ENST00000344651	human	ensembl	69_37n	1	known	missense	c.273	p.I91M	1.000	pfam_GMP_PDE_delta,superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119B	HGNC	ENSG00000175970	220	0	0	42	15	26.32	-	-	-	G	121151105	C	G	121151105	3	3	365	1	0	0	0	0	1	0	0	0	17080	903	32	2	279	2	UNC119B	12	121151105	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7396666	121151105	12700790	179	38985										
KNTC1	0	genome.wustl.edu	37	chr12	123069500	123069500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aatggctgtagagctttccaGacaatgccaaatggatgact	10	8	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	123069500	123069500	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.3497	p.R1166K	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	213	0	0	59	16	21.33	-	-	-	A	123069500	G	A	123069500	3	1	365	1	0	0	0	0	1	0	0	0	8481	942	33	2	3635	2	KNTC1	12	123069500	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1918395	123069500	10782395	180	38986										
DNAH10	0	genome.wustl.edu	37	chr12	124362321	124362321	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtggctgtgagtggcaagctGacattctgcacgctagcact	13	10	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	12	124362321	124362321	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.7884	p.L2628	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	203	0	0	69	32	31.68	-	-	-	A	124362321	G	A	124362321	2	1	365	1	0	0	0	0	0	0	0	1	4634	1277	45	2		2	DNAH10	12	124362321	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1292821	124362321	9489574	181	38987										
N6AMT2	0	genome.wustl.edu	37	chr13	21331700	21331700	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gagctgctaaggcatgggcaGaaagctggggtgtctcatca	15	8	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	13	21331700	21331700	G	C	SNP	N6AMT2	ENST00000382754	human	ensembl	69_37n	-1	known	missense	c.38	p.S13C	0.878	NULL	pfam_N6_adenine_Mtase-rel_euk	-	no_errors	N6AMT2	HGNC	ENSG00000150456	321	0	0	126	24	16	-	-	-	C	21331700	G	C	21331700	3	2	365	1	0	0	0	0	1	0	0	0	10187	942	33	2	622	2	N6AMT2	13	21331700	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		21331700	93838178	182	38988										
CENPJ	0	genome.wustl.edu	37	chr13	25459796	25459796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gaggtgcagacttggatcttCgaggtggattgcctattaga	14	6	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	13	25459796	25459796	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	missense	c.3314	p.R1105Q	0.127	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	212	0	0	140	22	13.58	-	-	-	T	25459796	C	T	25459796	3	4	365	1	0	0	0	0	1	0	0	0	3263	884	31	1	726	1	CENPJ	13	25459796	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	4128096	25459796	89710082	183	38989										
NDFIP2	0	genome.wustl.edu	37	chr13	80125187	80125187	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcagaggatttgttaattatCtaaaagtcagaaacatgtct	7	5	4	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	13	80125187	80125187	C	G	SNP	NDFIP2	ENST00000218652	human	ensembl	69_37n	1	known	missense	c.943	p.L315V	0.994	pfam_NEDD4/BSD2	pfam_NEDD4/BSD2	-	no_errors	NDFIP2	HGNC	ENSG00000102471	168	0	0	44	14	24.14	-	-	-	G	80125187	C	G	80125187	3	3	365	1	0	0	0	0	1	0	0	0	10318	912	32	2	969	2	NDFIP2	13	80125187	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	54665391	80125187	35044691	184	38990										
GAS6	0	genome.wustl.edu	37	chr13	114529991	114529991	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tagtccaggctgtagaaggcGaagccgctcccggggtagaa	15	10	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	13	114529991	114529991	G	A	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	silent	c.1584	p.F528	0.998	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	110	0	0	44	16	26.67	-	-	-	A	114529991	G	A	114529991	2	1	365	1	0	0	0	0	0	0	0	1	6299	1049	37	1		1	GAS6	13	114529991	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	34404804	114529991	639887	185	38991										
SALL2	0	genome.wustl.edu	37	chr14	21991732	21991732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tggccccccaggtgcatccgGacatgctgctgcagagtgac	13	14	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	21991732	21991732	G	A	SNP	SALL2	ENST00000546363	human	ensembl	69_37n	-1	putative	missense	c.1706	p.S569F	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SALL2	HGNC	ENSG00000165821	84	0	0	60	21	25.93	-	-	-	A	21991732	G	A	21991732	3	1	365	1	0	0	0	0	1	0	0	0	13897	1161	41	2	897	2	SALL2	14	21991732	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		21991732	85357808	186	38992										
OR4E2	0	genome.wustl.edu	37	chr14	22133492	22133492	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgtatttcttcctgagcaatCtgtcctttattgacatctgc	6	10	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	22133492	22133492	C	T	SNP	OR4E2	ENST00000408935	human	ensembl	69_37n	1	known	silent	c.196	p.L66	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977	316	1	0.32	99	18	15.38	-	-	-	T	22133492	C	T	22133492	2	4	365	1	0	0	0	0	0	0	0	1	11133	912	32	2		2	OR4E2	14	22133492	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	141760	22133492	85216048	187	38993										
PPP2R3C	0	genome.wustl.edu	37	chr14	35554936	35554936	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	actgttgattaaatcctgaaGagagattttcaaaggatcct	8	6	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	35554936	35554936	G	C	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.1222	p.L408V	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	199	0	0	118	23	16.2	-	-	-	C	35554936	G	C	35554936	3	2	365	1	0	0	0	0	1	0	0	0	12467	942	33	2	143	2	PPP2R3C	14	35554936	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	13421444	35554936	71794604	188	38994										
PPP2R3C	0	genome.wustl.edu	37	chr14	35568480	35568480	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gttcttaaaggatctaaaaaGaagaagaacttcctaactgc	7	7	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	35568480	35568480	G	C	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.684	p.F228L	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	103	0	0	54	17	23.94	-	-	-	C	35568480	G	C	35568480	3	2	365	1	0	0	0	0	1	0	0	0	12467	933	33	2	705	2	PPP2R3C	14	35568480	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	13544	35568480	71781060	189	38995										
SYNE2	0	genome.wustl.edu	37	chr14	64496655	64496655	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtcacgttcgagaacatgatTcataccaggtttgcgtcaca	9	10	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	64496655	64496655	T	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.6757	p.S2253T	0.082	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	273	1	0.36	110	26	19.12	-	-	-	A	64496655	T	A	64496655	3	1	365	1	0	0	0	0	1	0	0	0	15538	1783	62	5	6927	5	SYNE2	14	64496655	Missense_Mutation	SNP	T	TCGA-AR-A0TX-01A-11D-A099-09	28928175	64496655	42852885	190	38996										
SYNE2	0	genome.wustl.edu	37	chr14	64630264	64630264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tccagagggctgcttatttgGaaaagatgctgcttgtgaaa	12	6	0	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	64630264	64630264	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.16444	p.E5482K	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	142	0	0	76	27	26.21	-	-	-	A	64630264	G	A	64630264	3	1	365	1	0	0	0	0	1	0	0	0	15538	1175	41	2	16794	2	SYNE2	14	64630264	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	133609	64630264	42719276	191	38997										
ACOT4	0	genome.wustl.edu	37	chr14	74062026	74062026	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	accccagcatgattccaataGagaaggcccaggggcccatc	10	14	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	74062026	74062026	G	C	SNP	ACOT4	ENST00000326303	human	ensembl	69_37n	1	known	missense	c.934	p.E312Q	0.999	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465	55	0	0	67	24	26.09	-	-	-	C	74062026	G	C	74062026	3	2	365	1	0	0	0	0	1	0	0	0	153	943	33	2	944	2	ACOT4	14	74062026	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	9431762	74062026	33287514	192	38998										
NRXN3	0	genome.wustl.edu	37	chr14	79270156	79270156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggggggcgtgtcaagctcatGgttaacttaggtatcgtatg	15	6	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	14	79270156	79270156	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.2232	p.M744I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	124	0	0	116	27	18.88	-	-	-	A	79270156	G	A	79270156	3	1	365	1	0	0	0	0	1	0	0	0	10740	1348	47	4	1133	4	NRXN3	14	79270156	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5208130	79270156	28079384	193	38999										
FAM189A1	0	genome.wustl.edu	37	chr15	29415586	29415586	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccgaagacggcctcctcctCgaggcgctcctcgttggtga	13	15	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	29415586	29415586	C	G	SNP	FAM189A1	ENST00000261275	human	ensembl	69_37n	-1	known	missense	c.1576	p.E526Q	0.885	NULL	pfam_CD20-like	-	no_errors	FAM189A1	HGNC	ENSG00000104059	63	0	0	26	13	33.33	-	-	-	G	29415586	C	G	29415586	3	3	365	1	0	0	0	0	1	0	0	0	5557	893	31	3	47	3	FAM189A1	15	29415586	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		29415586	73115806	194	39000										
ELL3	0	genome.wustl.edu	37	chr15	44068711	44068711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgagctcgcacttacccctCggtggccttggaaagcaatc	10	14	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	44068711	44068711	C	T	SNP	ELL3	ENST00000319359	human	ensembl	69_37n	-1	known	missense	c.164	p.R55Q	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886	205	0	0	91	34	27.2	-	-	-	T	44068711	C	T	44068711	3	4	365	1	0	0	0	0	1	0	0	0	5101	884	31	1	1069	1	ELL3	15	44068711	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	14653125	44068711	58462681	195	39001										
B2M	0	genome.wustl.edu	37	chr15	45003751	45003751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcattcgggccgagatgtctCgctccgtggccttagctgtg	14	12	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	45003751	45003751	C	T	SNP	B2M	ENST00000544417	human	ensembl	69_37n	1	known	missense	c.7	p.R3C	0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	B2M	HGNC	ENSG00000166710	116	0	0	45	10	18.18	-	-	-	T	45003751	C	T	45003751	3	4	365	1	0	0	0	0	1	0	0	0	1248	884	31	1	9	1	B2M	15	45003751	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	935040	45003751	57527641	196	39002										
DTWD1	0	genome.wustl.edu	37	chr15	49935542	49935542	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgacagggttgttacaagttGagttgaaaacaagaaaaact	10	4	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	49935542	49935542	G	C	SNP	DTWD1	ENST00000251250	human	ensembl	69_37n	1	known	missense	c.682	p.E228Q	1.000	pfam_DTW	pfam_DTW	-	no_errors	DTWD1	HGNC	ENSG00000104047	16	0	0	15	4	21.05	-	-	-	C	49935542	G	C	49935542	3	2	365	1	0	0	0	0	1	0	0	0	4826	1291	45	2	696	2	DTWD1	15	49935542	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	4931791	49935542	52595850	197	39003										
PLEKHO2	0	genome.wustl.edu	37	chr15	65157503	65157503	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgtcccaggcaccctgttctGagacttctgaggctgccccc	10	17	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	65157503	65157503	G	A	SNP	PLEKHO2	ENST00000323544	human	ensembl	69_37n	1	known	missense	c.889	p.E297K	0.406	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO2	HGNC	ENSG00000241839	39	0	0	18	6	25	-	-	-	A	65157503	G	A	65157503	3	1	365	1	0	0	0	0	1	0	0	0	12159	1291	45	2	911	2	PLEKHO2	15	65157503	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	15221961	65157503	37373889	198	39004										
NEO1	0	genome.wustl.edu	37	chr15	73562365	73562365	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gctcagacacttctgaagttGatttatttgttattaatgct	7	6	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	73562365	73562365	G	A	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.2509	p.D837N	1.000	superfamily_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	117	0	0	39	6	13.33	-	-	-	A	73562365	G	A	73562365	3	1	365	1	0	0	0	0	1	0	0	0	10408	1290	45	2	2575	2	NEO1	15	73562365	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	8404862	73562365	28969027	199	39005										
BLM	0	genome.wustl.edu	37	chr15	91352454	91352454	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atatggtgcggaagtgatttCagtattacagaaatactctg	10	5	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	15	91352454	91352454	C	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.3839	p.S1280L	0.716	pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	223	0	0	57	18	24	-	-	-	T	91352454	C	T	91352454	3	4	365	1	0	0	0	0	1	0	0	0	1450	838	29	2	3913	2	BLM	15	91352454	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	17790089	91352454	11178938	200	39006										
C16orf79	0	genome.wustl.edu	37	chr16	2260649	2260649	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccgcaggagggcttggtcttCacctgggcgtgcatcagggt	16	11	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	2260649	2260649	C	T	SNP	C16orf79	ENST00000562360	human	ensembl	69_37n	-1	known	silent	c.54	p.V18	0.998	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	C16orf79	HGNC	ENSG00000182685	55	0	0	77	9	10.47	-	-	-	T	2260649	C	T	2260649	2	4	365	1	0	0	0	0	0	0	0	1	1849	813	29	2		2	C16orf79	16	2260649	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		2260649	88094104	201	39007										
ATF7IP2	0	genome.wustl.edu	37	chr16	10567815	10567815	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cttgattctataattgatttGacaaaagaaggcctatccaa	6	7	1	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	10567815	10567815	G	C	SNP	ATF7IP2	ENST00000356427	human	ensembl	69_37n	1	known	missense	c.1518	p.L506F	0.988	NULL	superfamily_Fibronectin_type3	-	no_errors	ATF7IP2	HGNC	ENSG00000166669	121	0	0	80	9	10.11	-	-	-	C	10567815	G	C	10567815	3	2	365	1	0	0	0	0	1	0	0	0	1092	1281	45	2	1548	2	ATF7IP2	16	10567815	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	8307166	10567815	79786938	202	39008										
POLR3E	0	genome.wustl.edu	37	chr16	22337444	22337444	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccttcgtggaggccacctttCagagacagtttgtgctcacg	11	12	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	22337444	22337444	C	T	SNP	POLR3E	ENST00000299853	human	ensembl	69_37n	1	known	nonsense	c.1711	p.Q571*	0.998	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	32	0	0	21	6	22.22	-	-	-	T	22337444	C	T	22337444	4	4	365	1	0	0	0	0	0	1	0	0	12306	827	29	2	1777	2	POLR3E	16	22337444	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	11769629	22337444	68017309	203	39009										
CDR2	0	genome.wustl.edu	37	chr16	22358885	22358885	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgcaacatctgtcgcatctCtgccacctcggcctctagtt	7	16	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	22358885	22358885	C	T	SNP	CDR2	ENST00000268383	human	ensembl	69_37n	-1	known	missense	c.766	p.E256K	0.974	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743	130	0	0	66	11	14.29	-	-	-	T	22358885	C	T	22358885	3	4	365	1	0	0	0	0	1	0	0	0	3201	922	32	2	602	2	CDR2	16	22358885	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	21441	22358885	67995868	204	39010										
RABEP2	0	genome.wustl.edu	37	chr16	28931193	28931193	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagctcccgctccttctcctCacagtcctgctgctgctgct	7	19	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	28931193	28931193	C	G	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	missense	c.346	p.E116Q	0.999	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	84	0	0	55	13	19.12	-	-	-	G	28931193	C	G	28931193	3	3	365	1	0	0	0	0	1	0	0	0	13045	835	29	2	1407	2	RABEP2	16	28931193	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6572308	28931193	61423560	205	39011										
GNAO1	0	genome.wustl.edu	37	chr16	56368657	56368657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcagctacctggacagcctgGatcggattggggccgccgac	14	13	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	56368657	56368657	G	A	SNP	GNAO1	ENST00000262493	human	ensembl	69_37n	1	known	missense	c.481	p.D161N	1.000	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAO1	HGNC	ENSG00000087258	69	0	0	44	13	22.41	-	-	-	A	56368657	G	A	56368657	3	1	365	1	0	0	0	0	1	0	0	0	6560	1174	41	2	499	2	GNAO1	16	56368657	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	27437464	56368657	33986096	206	39012										
HYDIN	0	genome.wustl.edu	37	chr16	70884449	70884449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cacattcatagtgtagccctCggccttgacatttaatgtca	7	11	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	70884449	70884449	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.12550	p.E4184K	0.831	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	176	0	0	51	10	16.39	-	-	-	T	70884449	C	T	70884449	3	4	365	1	0	0	0	0	1	0	0	0	7521	893	31	1	2864	1	HYDIN	16	70884449	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	14515792	70884449	19470304	207	39013										
ZNF821	0	genome.wustl.edu	37	chr16	71894091	71894091	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caacatcatgtccattttctCcagcctcctcttgagccgct	5	16	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	71894091	71894091	C	G	SNP	ZNF821	ENST00000425432	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984	51	0	0	34	7	16.67	-	-	-	G	71894091	C	G	71894091	3	3	365	1	0	0	0	0	1	0	0	0	18271	864	30	2	173	2	ZNF821	16	71894091	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1009642	71894091	18460662	208	39014										
ZNF821	0	genome.wustl.edu	37	chr16	71895828	71895828	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cacatgtagctcttggcgctCaccactgctgcagtgtgctg	11	13	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	71895828	71895828	C	T	SNP	ZNF821	ENST00000425432	human	ensembl	69_37n	-1	known	silent	c.435	p.V145	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984	123	0	0	65	13	16.46	-	-	-	T	71895828	C	T	71895828	2	4	365	1	0	0	0	0	0	0	0	1	18271	813	29	2		2	ZNF821	16	71895828	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1737	71895828	18458925	209	39015										
TUBB3	0	genome.wustl.edu	37	chr16	90001832	90001832	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggggccgcatgtccatgaagGaggtggacgagcagatgctg	18	8	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	16	90001832	90001832	G	C	SNP	TUBB3	ENST00000315491	human	ensembl	69_37n	1	known	missense	c.973	p.E325Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Clone_based_vega_gene	ENSG00000258947	136	0	0	74	12	13.95	-	-	-	C	90001832	G	C	90001832	3	2	365	1	0	0	0	0	1	0	0	0	16854	1175	41	2	987	2	TUBB3	16	90001832	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	18106004	90001832	352921	210	39016										
TP53	0	genome.wustl.edu	37	chr17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagtgtttctgtcatccaaaTactccacacgcaaatttcct	4	12	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	7578235	7578235	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.614	p.Y205C	0.989	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	275	0	0	97	26	21.14	-	-	-	C	7578235	T	C	7578235	3	2	365	1	0	0	0	0	1	0	0	0	16477	1406	49	5	680	5	TP53	17	7578235	Missense_Mutation	SNP	T	TCGA-AR-A0TX-01A-11D-A099-09		7578235	73616975	211	39017										
KDM6B	0	genome.wustl.edu	37	chr17	7754985	7754985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggtggaagccccagctgcagGagctgctgaagctgcccgcc	15	14	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	7754985	7754985	G	A	SNP	KDM6B	ENST00000254846	human	ensembl	69_37n	1	known	missense	c.4036	p.E1346K	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510	16	0	0	29	6	17.14	-	-	-	A	7754985	G	A	7754985	3	1	365	1	0	0	0	0	1	0	0	0	8191	1175	41	2	4090	2	KDM6B	17	7754985	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	176750	7754985	73440225	212	39018										
MYH1	0	genome.wustl.edu	37	chr17	10404042	10404042	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttcactcagttgatcttctaGagcgcggcacatcttttcaa	7	11	6	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	10404042	10404042	G	C	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.3766	p.L1256V	0.613	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	358	0	0	120	22	15.38	-	-	-	C	10404042	G	C	10404042	3	2	365	1	0	0	0	0	1	0	0	0	10101	933	33	2	2105	2	MYH1	17	10404042	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2649057	10404042	70791168	213	39019										
SLFN11	0	genome.wustl.edu	37	chr17	33690742	33690742	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgcagcttttttctgttttCttctccaagagtcacttctc	5	12	5	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	33690742	33690742	C	G	SNP	SLFN11	ENST00000308377	human	ensembl	69_37n	-1	known	missense	c.85	p.E29Q	0.191	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN11	HGNC	ENSG00000172716	156	0	0	46	14	23.33	-	-	-	G	33690742	C	G	33690742	3	3	365	1	0	0	0	0	1	0	0	0	14822	922	32	2	2636	2	SLFN11	17	33690742	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	23286700	33690742	47504468	214	39020										
KRTAP4-2	0	genome.wustl.edu	37	chr17	39334385	39334385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctaggccacagccctggtcaGagcacacagagccacaacag	10	15	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	39334385	39334385	G	C	SNP	KRTAP4-2	ENST00000377726	human	ensembl	69_37n	-1	known	missense	c.32	p.S11C	0.902	NULL	NULL	-	no_errors	KRTAP4-2	HGNC	ENSG00000244537	99	0	0	61	10	13.89	-	-	-	C	39334385	G	C	39334385	3	2	365	1	0	0	0	0	1	0	0	0	8605	942	33	2	382	2	KRTAP4-2	17	39334385	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	5643643	39334385	41860825	215	39021										
HAP1	0	genome.wustl.edu	37	chr17	39887784	39887784	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cagaatgagcatctgttcctCatcctcaagagtgtcgagtt	9	10	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	39887784	39887784	C	T	SNP	HAP1	ENST00000310778	human	ensembl	69_37n	-1	known	missense	c.1030	p.E344K	0.656	pfam_HAP1_N	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805	184	0	0	93	31	24.8	-	-	-	T	39887784	C	T	39887784	3	4	365	1	0	0	0	0	1	0	0	0	7004	835	29	2	853	2	HAP1	17	39887784	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	553399	39887784	41307426	216	39022										
CCDC47	0	genome.wustl.edu	37	chr17	61838664	61838664	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	atagatgtgctcattctcctGgttcaactttcctgtgcttg	8	10	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	61838664	61838664	G	A	SNP	CCDC47	ENST00000225726	human	ensembl	69_37n	-1	known	nonsense	c.595	p.Q199*	1.000	pfam_DUF1682	pfam_DUF1682	-	no_errors	CCDC47	HGNC	ENSG00000108588	361	1	0.28	133	33	19.88	-	-	-	A	61838664	G	A	61838664	4	1	365	1	0	0	0	0	0	1	0	0	2845	1357	47	4	892	4	CCDC47	17	61838664	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	21950880	61838664	19356546	217	39023										
SOX9	0	genome.wustl.edu	37	chr17	70120527	70120527	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cacacagctcactcgaccttGaggaggcctcccacgaaggg	11	15	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	17	70120527	70120527	G	C	SNP	SOX9	ENST00000245479	human	ensembl	69_37n	1	known	nonstop	c.1529	p.*510S	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	44	0	0	35	17	32.69	-	-	-	C	70120527	G	C	70120527	4	2	365	1	0	0	0	0	0	0	0	0	15047	1285	45	2	1539	2	SOX9	17	70120527	Nonstop_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	8281863	70120527	11074683	218	39024										
SMCHD1	0	genome.wustl.edu	37	chr18	2700630	2700630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgaatgtttttggaatggacGattaataccatatacatcag	8	5	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	2700630	2700630	G	A	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.1436	p.R479Q	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	467	0	0	69	19	21.59	-	-	-	A	2700630	G	A	2700630	3	1	365	1	0	0	0	0	1	0	0	0	14877	1058	37	1	1478	1	SMCHD1	18	2700630	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		2700630	75376618	219	39025										
POTEC	0	genome.wustl.edu	37	chr18	14538183	14538183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	caaggacattaagttgacatCgtctgtccagcaggagttgt	11	8	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	14538183	14538183	C	T	SNP	POTEC	ENST00000358970	human	ensembl	69_37n	-1	known	missense	c.587	p.R196Q	0.907	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEC	HGNC	ENSG00000183206	49	0	0	38	12	24	-	-	-	T	14538183	C	T	14538183	3	4	365	1	0	0	0	0	1	0	0	0	12336	884	31	1	1081	1	POTEC	18	14538183	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	11837553	14538183	63539065	220	39026										
MBD1	0	genome.wustl.edu	37	chr18	47799318	47799318	+	Frame_Shift_Del	DEL	T	T	-													0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcacagaaggcaggcctgggTctactgcctgggagaagtag							TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	47799318	47799318	T	-	DEL	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	frame_shift_del	c.1745	p.D582fs	0.417	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	96	0	0	52	13	19.4	-	-	-	-	47799318	T	-	47799318	7	5	365	1	0	1	0	1	0	0	0	0	9413	1667	58	0	431	0	MBD1	18	47799318	Frame_Shift_Del	DEL	T	TCGA-AR-A0TX-01A-11D-A099-09	33261135	47799318	30277930	221	39027										
WDR7	0	genome.wustl.edu	37	chr18	54424178	54424178	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgaatatcggtccagcaaatCaaagccattgaccctattag	7	10	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	54424178	54424178	C	G	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	nonsense	c.2354	p.S785*	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	153	0	0	97	13	11.82	-	-	-	G	54424178	C	G	54424178	4	3	365	1	0	0	0	0	0	1	0	0	17417	838	29	2	2408	2	WDR7	18	54424178	Nonsense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6624860	54424178	23653070	222	39028										
DOK6	0	genome.wustl.edu	37	chr18	67068499	67068499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccatggcctccaactttaacGacatagtcaagcagggctac	8	13	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	67068499	67068499	G	A	SNP	DOK6	ENST00000382713	human	ensembl	69_37n	1	known	missense	c.19	p.D7N	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK6	HGNC	ENSG00000206052	68	0	0	37	6	13.95	-	-	-	A	67068499	G	A	67068499	3	1	365	1	0	0	0	0	1	0	0	0	4736	1058	37	1	21	1	DOK6	18	67068499	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	12644321	67068499	11008749	223	39029										
ZNF236	0	genome.wustl.edu	37	chr18	74611135	74611135	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggcaagacgaatattccagtCcctgatattcctttgcagga	9	10	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	18	74611135	74611135	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	silent	c.1845	p.V615	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	88	0	0	43	14	24.56	-	-	-	T	74611135	C	T	74611135	2	4	365	1	0	0	0	0	0	0	0	1	17885	842	30	2		2	ZNF236	18	74611135	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	7542636	74611135	3466113	224	39030										
ZNF556	0	genome.wustl.edu	37	chr19	2877800	2877800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gagtccatatgatcatgcacGccggagggagaccgtatgag	14	9	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	2877800	2877800	G	A	SNP	ZNF556	ENST00000307635	human	ensembl	69_37n	1	known	missense	c.844	p.A282T	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000	45	0	0	61	9	12.68	-	-	-	A	2877800	G	A	2877800	3	1	365	1	0	0	0	0	1	0	0	0	18083	1087	38	1	858	1	ZNF556	19	2877800	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		2877800	56251183	225	39031										
TLE6	0	genome.wustl.edu	37	chr19	2987056	2987056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ccctgcaggagtcgagctttGaggacatcatggccaccagg	13	12	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	2987056	2987056	G	C	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	missense	c.361	p.E121Q	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	47	0	0	72	18	20	-	-	-	C	2987056	G	C	2987056	3	2	365	1	0	0	0	0	1	0	0	0	16037	1291	45	2	383	2	TLE6	19	2987056	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	109256	2987056	56141927	226	39032										
SLC25A41	0	genome.wustl.edu	37	chr19	6427163	6427163	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtcagtgggtagctggccatCtggccacaggtcgtggatag	16	9	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	6427163	6427163	C	G	SNP	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	missense	c.891	p.Q297H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	23	0	0	27	5	15.62	-	-	-	G	6427163	C	G	6427163	3	3	365	1	0	0	0	0	1	0	0	0	14595	912	32	2	229	2	SLC25A41	19	6427163	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	3440107	6427163	52701820	227	39033										
KANK3	0	genome.wustl.edu	37	chr19	8399284	8399284	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggtgtgccgtctctcttcttCatgatggatttgaggatgcc	12	9	4	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	8399284	8399284	C	T	SNP	KANK3	ENST00000330915	human	ensembl	69_37n	-1	known	missense	c.1347	p.M449I	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	105	0	0	50	10	16.67	-	-	-	T	8399284	C	T	8399284	3	4	365	1	0	0	0	0	1	0	0	0	8032	826	29	2	1150	2	KANK3	19	8399284	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1972121	8399284	50729699	228	39034										
MUC16	0	genome.wustl.edu	37	chr19	9066267	9066267	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gaaatctctgagtcaaagttGaatgagtctttgcctgggac	11	7	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	9066267	9066267	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	nonsense	c.21179	p.S7060*	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	320	0	0	208	46	17.97	-	-	-	C	9066267	G	C	9066267	4	2	365	1	0	0	0	0	0	1	0	0	10045	1294	45	2	22672	2	MUC16	19	9066267	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	666983	9066267	50062716	229	39035										
COL5A3	0	genome.wustl.edu	37	chr19	10108093	10108093	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctggggggccgggagggcctGaggggccaaccaccccctgt	18	14	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	10108093	10108093	G	C	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	nonsense	c.1217	p.S406*	0.691	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	55	0	0	39	11	22	-	-	-	C	10108093	G	C	10108093	4	2	365	1	0	0	0	0	0	1	0	0	3728	1294	45	2	4248	2	COL5A3	19	10108093	Nonsense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1041826	10108093	49020890	230	39036										
KANK2	0	genome.wustl.edu	37	chr19	11283661	11283661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccggggtccccatacctggCtggctttggcattgatgttg	14	11	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	11283661	11283661	C	G	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.2231	p.S744T	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	91	0	0	55	16	22.54	-	-	-	G	11283661	C	G	11283661	3	3	365	1	0	0	0	0	1	0	0	0	8031	797	28	4	364	4	KANK2	19	11283661	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1175568	11283661	47845322	231	39037										
ANO8	0	genome.wustl.edu	37	chr19	17444235	17444235	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gggacaggggactcgcctctCatacgtggcggtgacaaaga	15	10	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	17444235	17444235	C	G	SNP	ANO8	ENST00000159087	human	ensembl	69_37n	-1	known	missense	c.346	p.E116Q	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	115	0	0	80	20	20	-	-	-	G	17444235	C	G	17444235	3	3	365	1	0	0	0	0	1	0	0	0	702	835	29	2	3416	2	ANO8	19	17444235	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6160574	17444235	41684748	232	39038										
DMKN	0	genome.wustl.edu	37	chr19	35990898	35990898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgagtacttcccaccataggCagtgggatacgcatgctggt	12	10	0	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	35990898	35990898	C	A	SNP	DMKN	ENST00000339686	human	ensembl	69_37n	-1	known	missense	c.1321	p.A441S	0.000	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249	191	0	0	173	29	14.36	-	-	-	A	35990898	C	A	35990898	3	1	365	1	0	0	0	0	1	0	0	0	4618	710	25	4	121	4	DMKN	19	35990898	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	18546663	35990898	23138085	233	39039										
NPHS1	0	genome.wustl.edu	37	chr19	36336322	36336322	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gtttcgcggagctcggcgctGtgggcgcggcaggtcacgcg	19	12	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	36336322	36336322	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	silent	c.1878	p.H626	1.000	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	41	0	0	32	7	17.95	-	-	-	A	36336322	G	A	36336322	2	1	365	1	0	0	0	0	0	0	0	1	10654	1368	48	4		4	NPHS1	19	36336322	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	345424	36336322	22792661	234	39040										
ZNF585B	0	genome.wustl.edu	37	chr19	37676240	37676240	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgtgttgtctgatgtttattCaaattggacctgttgctaaa	9	5	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	37676240	37676240	C	G	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.2199	p.L733F	0.058	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	348	0	0	181	44	19.56	-	-	-	G	37676240	C	G	37676240	3	3	365	1	0	0	0	0	1	0	0	0	18114	825	29	2	114	2	ZNF585B	19	37676240	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1339918	37676240	21452743	235	39041										
PAF1	0	genome.wustl.edu	37	chr19	39876572	39876572	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggctcacaaacagaccactaGaaaagtgctttgctgctcac	8	12	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	39876572	39876572	G	A	SNP	PAF1	ENST00000221266	human	ensembl	69_37n	-1	known	silent	c.1372	p.L458	0.778	NULL	pfam_RNA_pol_II-assoc_Paf1	-	no_errors	PAF1	HGNC	ENSG00000006712	17	0	0	12	4	25	-	-	-	A	39876572	G	A	39876572	2	1	365	1	0	0	0	0	0	0	0	1	11456	957	33	2		2	PAF1	19	39876572	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	2200332	39876572	19252411	236	39042										
FCGBP	0	genome.wustl.edu	37	chr19	40377034	40377034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	22	0	0	48	13	21.31	-	-	-	A	40377034	G	A	40377034	2	1	365	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40377034	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	500462	40377034	18751949	237	39043										
C19orf47	0	genome.wustl.edu	37	chr19	40834429	40834429	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctgggtggagagtcatggttCaggctgttggtgatcattcg	16	6	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	40834429	40834429	C	T	SNP	C19orf47	ENST00000582783	human	ensembl	69_37n	-1	known	silent	c.441	p.L147	1.000	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392	495	0	0	241	48	16.61	-	-	-	T	40834429	C	T	40834429	2	4	365	1	0	0	0	0	0	0	0	1	1948	813	29	2		2	C19orf47	19	40834429	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	457395	40834429	18294554	238	39044										
TMEM145	0	genome.wustl.edu	37	chr19	42818951	42818951	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgtttgtccccaggtggtatCagaggagggaacccgctacc	13	12	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	42818951	42818951	C	T	SNP	TMEM145	ENST00000301204	human	ensembl	69_37n	1	known	missense	c.368	p.S123L	0.998	NULL	pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	TMEM145	HGNC	ENSG00000167619	68	0	0	57	13	18.57	-	-	-	T	42818951	C	T	42818951	3	4	365	1	0	0	0	0	1	0	0	0	16154	838	29	2	386	2	TMEM145	19	42818951	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1984522	42818951	16310032	239	39045										
SPHK2	0	genome.wustl.edu	37	chr19	49132338	49132338	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gttctgtgtctgacctgcctCttcccctgccccagcctgcc	8	19	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	49132338	49132338	C	T	SNP	SPHK2	ENST00000443164	human	ensembl	69_37n	1	known	missense	c.1459	p.L487F	0.998	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176	48	0	0	26	7	21.21	-	-	-	T	49132338	C	T	49132338	3	4	365	1	0	0	0	0	1	0	0	0	15138	913	32	2	1295	2	SPHK2	19	49132338	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	6313387	49132338	9996645	240	39046										
ZNF671	0	genome.wustl.edu	37	chr19	58232983	58232983	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tgagactccagctctgccatGagagtcctgacctctgacac	9	14	2	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	58232983	58232983	G	C	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	silent	c.471	p.L157	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	152	0	0	56	26	31.71	-	-	-	C	58232983	G	C	58232983	2	2	365	1	0	0	0	0	0	0	0	1	18174	1277	45	2		2	ZNF671	19	58232983	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	9100645	58232983	896000	241	39047										
ZNF446	0	genome.wustl.edu	37	chr19	58991184	58991184	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gggcagggcctctgtgctacCagccctacccagctctccca	10	18	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	19	58991184	58991184	C	T	SNP	ZNF446	ENST00000391694	human	ensembl	69_37n	1	known	silent	c.291	p.T97	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF446	HGNC	ENSG00000083838	26	0	0	21	12	36.36	-	-	-	T	58991184	C	T	58991184	2	4	365	1	0	0	0	0	0	0	0	1	18015	609	21	4		4	ZNF446	19	58991184	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	758201	58991184	137799	242	39048										
SIRPB2	0	genome.wustl.edu	37	chr20	1460486	1460486	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ataatcacaattcagtggttCtgatgtccgttggatcatgg	10	7	4	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	1460486	1460486	C	T	SNP	SIRPB2	ENST00000359801	human	ensembl	69_37n	-1	known	missense	c.310	p.E104K	0.013	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIRPB2	HGNC	ENSG00000196209	159	0	0	78	12	13.33	-	-	-	T	1460486	C	T	1460486	3	4	365	1	0	0	0	0	1	0	0	0	14423	922	32	2	734	2	SIRPB2	20	1460486	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		1460486	61565034	243	39049										
ADRA1D	0	genome.wustl.edu	37	chr20	4229170	4229170	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aagggcagtacggtggcgctCagcagcaggtcggccacggc	17	12	1	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	4229170	4229170	C	T	SNP	ADRA1D	ENST00000379453	human	ensembl	69_37n	-1	known	silent	c.435	p.L145	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A1A,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1D	HGNC	ENSG00000171873	60	0	0	66	13	16.46	-	-	-	T	4229170	C	T	4229170	2	4	365	1	0	0	0	0	0	0	0	1	336	813	29	2		2	ADRA1D	20	4229170	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2768684	4229170	58796350	244	39050										
CHGB	0	genome.wustl.edu	37	chr20	5904085	5904085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gccacgtgcctatttcatgtCtgacaccagagaagagaaaa	9	10	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	5904085	5904085	C	T	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.1295	p.S432F	0.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	75	0	0	58	12	17.14	-	-	-	T	5904085	C	T	5904085	3	4	365	1	0	0	0	0	1	0	0	0	3368	913	32	2	1309	2	CHGB	20	5904085	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	1674915	5904085	57121435	245	39051										
FAM83C	0	genome.wustl.edu	37	chr20	33876299	33876299	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	accacttgctcacagtcaatGaggacgaacttctccagggc	9	13	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	33876299	33876299	G	A	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	silent	c.771	p.L257	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	73	0	0	58	16	21.62	-	-	-	A	33876299	G	A	33876299	2	1	365	1	0	0	0	0	0	0	0	1	5680	1277	45	2		2	FAM83C	20	33876299	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	27972214	33876299	29149221	246	39052										
GDAP1L1	0	genome.wustl.edu	37	chr20	42893315	42893315	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aggacctcccaggtggttaaGaggatgggctatggagtcag	16	7	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	42893315	42893315	G	A	SNP	GDAP1L1	ENST00000445952	human	ensembl	69_37n	1	known	missense	c.715	p.E239K	0.000	NULL	superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GDAP1L1	HGNC	ENSG00000124194	24	0	0	19	7	26.92	-	-	-	A	42893315	G	A	42893315	3	1	365	1	0	0	0	0	1	0	0	0	6359	957	33	2		2	GDAP1L1	20	42893315	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	9017016	42893315	20132205	247	39053										
WFDC6	0	genome.wustl.edu	37	chr20	44163071	44163071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gcatcaatcaggcacacgtgGagagaggcctggattatgag	14	8	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	44163071	44163071	G	A	SNP	WFDC6	ENST00000372665	human	ensembl	69_37n	-1	novel	missense	c.469	p.P157S	0.001	NULL	pfam_Prot_inh_Kunz-m,pfam_Whey_acidic_protein_4-diS_core,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	WFDC6	HGNC	ENSG00000243543	97	0	0	102	21	17.07	-	-	-	A	44163071	G	A	44163071	3	1	365	1	0	0	0	0	1	0	0	0	17452	1189	41	2		2	WFDC6	20	44163071	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1269756	44163071	18862449	248	39054										
SYCP2	0	genome.wustl.edu	37	chr20	58441426	58441426	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tcctctatgataatgaattgGaatttatcaagttttttaat	5	4	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	58441426	58441426	G	C	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	missense	c.4242	p.F1414L	0.981	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	84	0	0	84	10	10.53	-	-	-	C	58441426	G	C	58441426	3	2	365	1	0	0	0	0	1	0	0	0	15524	1165	41	2	370	2	SYCP2	20	58441426	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	14278355	58441426	4584094	249	39055										
MYT1	0	genome.wustl.edu	37	chr20	62854671	62854671	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggttgccctcttgctgacaaGagcctcagaaacctcatggc	10	13	3	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	20	62854671	62854671	G	C	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.2568	p.K856N	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	317	0	0	151	36	19.25	-	-	-	C	62854671	G	C	62854671	3	2	365	1	0	0	0	0	1	0	0	0	10178	933	33	2	2541	2	MYT1	20	62854671	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	4413245	62854671	170849	250	39056										
ADAMTS1	0	genome.wustl.edu	37	chr21	28212328	28212328	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggactcctccaccgcacgttCtcgaacagtctccccaaggc	8	18	2	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	21	28212328	28212328	C	G	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	missense	c.1718	p.R573T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	229	0	0	105	23	17.83	-	-	-	G	28212328	C	G	28212328	3	3	365	1	0	0	0	0	1	0	0	0	255	913	32	2	1201	2	ADAMTS1	21	28212328	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		28212328	19917567	251	39057										
SSTR3	0	genome.wustl.edu	37	chr22	37602828	37602828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgggggccccacagtgggctCctggctgcgcacacggcggg	18	15	0	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	22	37602828	37602828	C	T	SNP	SSTR3	ENST00000328544	human	ensembl	69_37n	-1	known	missense	c.1015	p.E339K	1.000	prints_Somatstn_rcpt_3	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_3,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473	36	0	0	22	7	24.14	-	-	-	T	37602828	C	T	37602828	3	4	365	1	0	0	0	0	1	0	0	0	15290	864	30	2	245	2	SSTR3	22	37602828	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09		37602828	13701738	252	39058										
PIM3	0	genome.wustl.edu	37	chr22	50356707	50356707	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ggggcgtcccggagagctgtGacctgcggctgtgcaccctc	16	14	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	22	50356707	50356707	G	A	SNP	PIM3	ENST00000360612	human	ensembl	69_37n	1	known	missense	c.913	p.D305N	0.980	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM3	HGNC	ENSG00000198355	24	0	0	28	7	20	-	-	-	A	50356707	G	A	50356707	3	1	365	1	0	0	0	0	1	0	0	0	12003	1290	45	2	935	2	PIM3	22	50356707	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	12753879	50356707	947859	253	39059										
TUBGCP6	0	genome.wustl.edu	37	chr22	50658734	50658734	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gggccaccatggttgggtggGagccacgtctgacacgttct	15	11	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	22	50658734	50658734	G	C	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.4054	p.P1352A	0.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	40	0	0	54	7	11.48	-	-	-	C	50658734	G	C	50658734	3	2	365	1	0	0	0	0	1	0	0	0	16867	1174	41	2	1445	2	TUBGCP6	22	50658734	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	302027	50658734	645832	254	39060										
GPR64	0	genome.wustl.edu	37	chrX	19028892	19028892	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gaaatactgctggtgttgacGatgtctatatcaaagagcca	10	7	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	19028892	19028892	G	A	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	silent	c.1104	p.I368	0.013	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	112	0	0	54	8	12.9	-	-	-	A	19028892	G	A	19028892	2	1	365	1	0	0	0	0	0	0	0	1	6755	1048	37	1		1	GPR64	23	19028892	Silent	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09		19028892	136241668	255	39061										
UBA1	0	genome.wustl.edu	37	chrX	47070624	47070624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	agagcgccaatgcctctgttGgtgagggtgtttggccagtt	15	8	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	47070624	47070624	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.2464	p.D822N	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	53	0	0	34	14	29.17	-	-	-	A	47070624	G	A	47070624	3	1	365	1	0	0	0	0	1	0	0	0	16924	1362	47	4	2538	4	UBA1	23	47070624	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	28041732	47070624	108199936	256	39062										
HDAC6	0	genome.wustl.edu	37	chrX	48681327	48681327	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cctccctggttccagaggtaGaagacagagaaggaccctcc	11	13	0	4			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	48681327	48681327	G	C	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2560	p.E854Q	0.429	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	86	0	0	62	16	20.51	-	-	-	C	48681327	G	C	48681327	3	2	365	1	0	0	0	0	1	0	0	0	7062	943	33	2	2612	2	HDAC6	23	48681327	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	1610703	48681327	106589233	257	39063										
ARHGEF9	0	genome.wustl.edu	37	chrX	62885817	62885817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aggaagaagacccgctgctgGttgcggccgtagggctggta	17	9	0	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	62885817	62885817	G	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.1005	p.N335K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	217	0	0	166	33	16.5	-	-	-	T	62885817	G	T	62885817	3	4	365	1	0	0	0	0	1	0	0	0	914	1252	44	4	561	4	ARHGEF9	23	62885817	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	14204490	62885817	92384743	258	39064										
MED12	0	genome.wustl.edu	37	chrX	70352039	70352039	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aacatgcccagcagcagcaaGaccaagcctgtgctcaggtc	10	14	1	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	70352039	70352039	G	C	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.4236	p.K1412N	0.945	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	153	0	0	85	14	14.14	-	-	-	C	70352039	G	C	70352039	3	2	365	1	0	0	0	0	1	0	0	0	9499	933	33	2	4354	2	MED12	23	70352039	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	7466222	70352039	84918521	259	39065										
KIAA2022	0	genome.wustl.edu	37	chrX	73962610	73962610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	gagtccgtgttggtgtttctCtgcttcttcttcttttgcca	9	10	4	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	73962610	73962610	C	G	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.1782	p.Q594H	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	435	0	0	152	30	16.48	-	-	-	G	73962610	C	G	73962610	3	3	365	1	0	0	0	0	1	0	0	0	8321	912	32	2	2776	2	KIAA2022	23	73962610	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	3610571	73962610	81307950	260	39066										
ATP7A	0	genome.wustl.edu	37	chrX	77294386	77294386	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	attggtaaccgggagtggatGattagaaatggtcttgtcat	13	4	2	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	77294386	77294386	G	A	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.3564	p.M1188I	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	297	0	0	144	42	22.58	-	-	-	A	77294386	G	A	77294386	3	1	365	1	0	0	0	0	1	0	0	0	1194	1290	45	2	3630	2	ATP7A	23	77294386	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	3331776	77294386	77976174	261	39067										
ARMCX5	0	genome.wustl.edu	37	chrX	101858368	101858368	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cactatgtgattaccagttaTattccagatttcctcacctt	4	11	1	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	101858368	101858368	T	C	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	silent	c.1299	p.Y433	0.051	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	135	0	0	43	8	15.69	-	-	-	C	101858368	T	C	101858368	2	2	365	1	0	0	0	0	0	0	0	1	966	1413	49	5		5	ARMCX5	23	101858368	Silent	SNP	T	TCGA-AR-A0TX-01A-11D-A099-09	24563982	101858368	53412192	262	39068										
RAB40AL	0	genome.wustl.edu	37	chrX	102192645	102192645	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	cgcctacatctggcattcaaGaggcaggtgcccagggagca	13	12	2	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	102192645	102192645	G	C	SNP	RAB40AL	ENST00000218249	human	ensembl	69_37n	1	known	missense	c.399	p.K133N	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40AL	HGNC	ENSG00000102128	51	0	0	53	18	25.35	-	-	-	C	102192645	G	C	102192645	3	2	365	1	0	0	0	0	1	0	0	0	13023	933	33	2	401	2	RAB40AL	23	102192645	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	334277	102192645	53077915	263	39069										
NXF3	0	genome.wustl.edu	37	chrX	102338141	102338141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctttatctgctccaccttttCtgacttcagctccctgtgca	5	15	3	1			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	102338141	102338141	C	G	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.601	p.E201Q	0.068	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	215	0	0	67	16	19.28	-	-	-	G	102338141	C	G	102338141	3	3	365	1	0	0	0	0	1	0	0	0	10858	922	32	2	1050	2	NXF3	23	102338141	Missense_Mutation	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	145496	102338141	52932419	264	39070										
NRK	0	genome.wustl.edu	37	chrX	105193653	105193653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ctcaccttcaatgctgaagcCctctctgtggaagcaaatga	8	12	3	2			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	105193653	105193653	C	T	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	silent	c.4443	p.A1481	0.202	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	215	0	0	86	23	21.1	-	-	-	T	105193653	C	T	105193653	2	4	365	1	0	0	0	0	0	0	0	1	10728	610	22	4		4	NRK	23	105193653	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	2855512	105193653	50076907	265	39071										
CXorf57	0	genome.wustl.edu	37	chrX	105879798	105879798	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	tattttgtgtgtacacagttGaaagttgtcagaaatgacaa	9	4	1	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	105879798	105879798	G	C	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.1329	p.L443F	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	324	0	0	151	28	15.38	-	-	-	C	105879798	G	C	105879798	3	2	365	1	0	0	0	0	1	0	0	0	4144	1281	45	2	1355	2	CXorf57	23	105879798	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	686145	105879798	49390762	266	39072										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685470	125685470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	ttctgggcccggacgtcataGaagagcagggagccctgacc	14	12	2	3			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	125685470	125685470	G	C	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	missense	c.1122	p.F374L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	31	0	0	29	12	29.27	-	-	-	C	125685470	G	C	125685470	3	2	365	1	0	0	0	0	1	0	0	0	4296	933	33	2	273	2	DCAF12L1	23	125685470	Missense_Mutation	SNP	G	TCGA-AR-A0TX-01A-11D-A099-09	19805672	125685470	29585090	267	39073										
SOX3	0	genome.wustl.edu	37	chrX	139586809	139586809	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.625468164794007	167	3.86816699034584e-65	4.02615187982106	4.46524262874588	3.6695969859573	1	1	126	aaggcgttcatgggccgtttCacacggtcctggtctgtacc	12	12	3	0			TCGA-AR-A0TX-01A-11D-A099-09	TCGA-AR-A0TX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63d635fa-d136-4e8a-a534-966ee678bb66	3c3cfe65-4e86-4c42-85d0-9daaeff2fc26	X	139586809	139586809	C	T	SNP	SOX3	ENST00000370536	human	ensembl	69_37n	-1	known	silent	c.417	p.V139	0.994	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX3	HGNC	ENSG00000134595	56	0	0	21	4	16	-	-	-	T	139586809	C	T	139586809	2	4	365	1	0	0	0	0	0	0	0	1	15040	813	29	2		2	SOX3	23	139586809	Silent	SNP	C	TCGA-AR-A0TX-01A-11D-A099-09	13901339	139586809	15683751	268	39074										
PRAMEF11	0	genome.wustl.edu	37	chr1	12887458	12887458	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	aggtgtagtaaatctctcctCtgcttgacccatagaaggag	10	9	2	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	12887458	12887458	C	A	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.399	p.Q133H	0.112	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	386	0	0	138	155	52.9	-	-	-	A	12887458	C	A	12887458	3	1	366	1	0	0	0	0	1	0	0	0	12504	912	32	2	919	2	PRAMEF11	1	12887458	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09		12887458	236363163	1	39075										
CCDC17	0	genome.wustl.edu	37	chr1	46086407	46086408	+	Frame_Shift_Ins	INS	-	-	A													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccctcaccggaggtgggtacINStggtactcatggacacttgc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	46086407	46086408	-	A	INS	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1602_1601	p.Q534fs	0.991:0.994	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	244	0	0	66	48	42.11	-	-	-	A	46086408	-	A	46086407	7	5	366	1	0	1	1	0	0	0	0	0	2819	564	20	0	178	0	CCDC17	1	46086407	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	33198949	46086407	203164214	2	39076										
RPAP2	0	genome.wustl.edu	37	chr1	92789086	92789086	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cctagccactttgaaaagcaAtatgaatctagttcttctag	6	9	3	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	92789086	92789086	A	G	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	silent	c.609	p.Q203	0.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	371	0	0	147	79	34.8	-	-	-	G	92789086	A	G	92789086	2	3	366	1	0	0	0	0	0	0	0	1	13628	98	4	5		5	RPAP2	1	92789086	Silent	SNP	A	TCGA-AR-A0TY-01A-12W-A12T-09	46702679	92789086	156461535	3	39077										
FRRS1	0	genome.wustl.edu	37	chr1	100195231	100195231	+	Frame_Shift_Del	DEL	C	C	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agtccattacagggtgacttCgccccgttaaatgggaaggc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	100195231	100195231	C	-	DEL	FRRS1	ENST00000287474	human	ensembl	69_37n	-1	known	frame_shift_del	c.833	p.R278fs	1.000	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	172	0	0	47	26	33.77	-	-	-	-	100195231	C	-	100195231	7	5	366	1	0	1	0	1	0	0	0	0	6109	884	31	0	1087	0	FRRS1	1	100195231	Frame_Shift_Del	DEL	C	TCGA-AR-A0TY-01A-12W-A12T-09	7406145	100195231	149055390	4	39078										
OR10Z1	0	genome.wustl.edu	37	chr1	158577066	158577066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttattgccatgacctatactGtagtgacccccctccttaat	5	13	0	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	158577066	158577066	G	T	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	1	known	missense	c.838	p.V280L	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	457	1	0.22	239	104	30.23	-	-	-	T	158577066	G	T	158577066	3	4	366	1	0	0	0	0	1	0	0	0	10996	1377	48	4	840	4	OR10Z1	1	158577066	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	58381835	158577066	90673555	5	39079										
BLZF1	0	genome.wustl.edu	37	chr1	169347609	169347609	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttactggtggcttctgttggGgatgatcttcagtatcactt	11	7	4	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	169347609	169347609	G	T	SNP	BLZF1	ENST00000329281	human	ensembl	69_37n	1	known	silent	c.510	p.G170	0.958	NULL	pfam_DUF1721_fun	-	no_errors	BLZF1	HGNC	ENSG00000117475	494	0	0	231	50	17.73	-	-	-	T	169347609	G	T	169347609	2	4	366	1	0	0	0	0	0	0	0	1	1458	1219	43	4		4	BLZF1	1	169347609	Silent	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	10770543	169347609	79903012	6	39080										
NR5A2	0	genome.wustl.edu	37	chr1	200143157	200143159	+	In_Frame_Del	DEL	TGG	TGG	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	acaagtcaatgccgccctgcTggactacacaatgtgtaact							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	200143157	200143159	TGG	-	DEL	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	in_frame_del	c.1445_1447	p.LD482in_frame_delH	1.000:1.000:1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	123	0	0	62	17	21.52	-	-	-	-	200143159	TGG	-	200143157	7	5	366	1	0	1	0	1	0	0	0	0	10709	1580	55	0	1475	0	NR5A2	1	200143157	In_Frame_Del	DEL	TGG	TCGA-AR-A0TY-01A-12W-A12T-09	30795548	200143157	49107464	7	39081										
KIAA1804	0	genome.wustl.edu	37	chr1	233490631	233490631	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccatcgtttgccttaattctCgaacagttgactgctattga	7	10	1	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	233490631	233490631	C	A	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	silent	c.1185	p.L395	0.998	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	336	0	0	315	260	45.22	-	-	-	A	233490631	C	A	233490631	2	1	366	1	0	0	0	0	0	0	0	1	8311	871	31	3		3	KIAA1804	1	233490631	Silent	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	33347474	233490631	15759990	8	39082										
ALMS1	0	genome.wustl.edu	37	chr2	73677994	73677994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	acaggtcttgccacatagtcAtctacctgaagaggctttgg	10	10	3	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	73677994	73677994	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.4337	p.H1446R	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	311	1	0.32	120	66	35.48	-	-	-	G	73677994	A	G	73677994	3	3	366	1	0	0	0	0	1	0	0	0	535	217	8	5	4367	5	ALMS1	2	73677994	Missense_Mutation	SNP	A	TCGA-AR-A0TY-01A-12W-A12T-09		73677994	169521379	9	39083										
ZNF514	0	genome.wustl.edu	37	chr2	95815222	95815223	+	Frame_Shift_Ins	INS	-	-	CG													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gtttctctccagtatgaaatINSctgtaatgcacaatgagtga							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	95815222	95815223	-	CG	INS	ZNF514	ENST00000295208	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1008_1007	p.R336fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	409	0	0	236	119	33.52	-	-	-	CG	95815223	-	CG	95815222	7	5	366	1	0	1	1	0	0	0	0	0	18055	1432	50	0	198	0	ZNF514	2	95815222	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	22137228	95815222	147384151	10	39084										
EN1	0	genome.wustl.edu	37	chr2	119600568	119600568	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gtggagtggttgtacagtccCtgggccatgaggtgcagcgc	17	9	0	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	119600568	119600568	C	A	SNP	EN1	ENST00000295206	human	ensembl	69_37n	-1	known	missense	c.1125	p.Q375H	1.000	pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,prints_Homeodomain_engrailed	pfam_Homeodomain,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064	149	0	0	77	10	11.49	-	-	-	A	119600568	C	A	119600568	3	1	366	1	0	0	0	0	1	0	0	0	5146	680	24	4	57	4	EN1	2	119600568	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	23785346	119600568	123598805	11	39085										
KYNU	0	genome.wustl.edu	37	chr2	143685297	143685298	+	Frame_Shift_Ins	INS	-	-	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agagtattgtaggccttatgINSaaggacattgtaggtaagta							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	143685297	143685298	-	T	INS	KYNU	ENST00000264170	human	ensembl	69_37n	1	known	frame_shift_ins	c.360_361	p.K120fs	0.996:0.613	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	491	0	0	268	241	47.35	-	-	-	T	143685298	-	T	143685297	7	5	366	1	0	1	1	0	0	0	0	0	8641	1290	45	0	370	0	KYNU	2	143685297	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	24084729	143685297	99514076	12	39086	318	2								
KYNU	0	genome.wustl.edu	37	chr2	143685303	143685306	+	Frame_Shift_Del	DEL	CATT	CATT	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	attgtaggccttatgaaggaCattgtaggtaagtacaaaac							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CATT	CATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	143685303	143685306	CATT	-	DEL	KYNU	ENST00000264170	human	ensembl	69_37n	1	known	frame_shift_del	c.366_369	p.D122fs	1.000:1.000:1.000:1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	476	0	0	250	206	45.18	-	-	-	-	143685306	CATT	-	143685303	7	5	366	1	0	1	0	1	0	0	0	0	8641	477	17	0	376	0	KYNU	2	143685303	Frame_Shift_Del	DEL	CATT	TCGA-AR-A0TY-01A-12W-A12T-09	6	143685303	99514070	13	39087	318	2								
CCDC108	0	genome.wustl.edu	37	chr2	219895498	219895498	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	aacagcttctggaagccctcGgcatcctggtcctccgggca	11	15	1	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	219895498	219895498	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	silent	c.1074	p.A358	0.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	159	0	0	24	34	58.62	-	-	-	A	219895498	G	A	219895498	2	1	366	1	0	0	0	0	0	0	0	1	2768	1103	39	1		1	CCDC108	2	219895498	Silent	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	76210195	219895498	23303875	14	39088										
WNT7A	0	genome.wustl.edu	37	chr3	13896104	13896104	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	atctcccgggcatccacaaaGaccttggcgaagccgatgcc	10	15	1	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	13896104	13896104	G	A	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	silent	c.495	p.V165	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	151	0	0	47	90	65.69	-	-	-	A	13896104	G	A	13896104	2	1	366	1	0	0	0	0	0	0	0	1	17491	929	33	2		2	WNT7A	3	13896104	Silent	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		13896104	184126326	15	39089										
IP6K2	0	genome.wustl.edu	37	chr3	48730707	48730708	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttgtttttttcttacccagtINStccttagtctctatgttgcc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	48730707	48730708	-	C	INS	IP6K2	ENST00000449563	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.267_266	p.L90fs	1.000:1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IP6K2	HGNC	ENSG00000068745	82	0	0	22	3	12	-	-	-	C	48730708	-	C	48730707	7	5	366	1	0	1	1	0	0	0	0	0	7843	1740	60	0		0	IP6K2	3	48730707	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	34834603	48730707	149291723	16	39090	319	2								
IP6K2	0	genome.wustl.edu	37	chr3	48730708	48730709	+	Frame_Shift_Ins	INS	-	-	TC													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgtttttttcttacccagttINSccttagtctctatgttgcca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	48730708	48730709	-	TC	INS	IP6K2	ENST00000449563	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.266_265	p.E89fs	1.000:1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IP6K2	HGNC	ENSG00000068745	82	0	0	20	3	13.04	-	-	-	TC	48730709	-	TC	48730708	7	5	366	1	0	1	1	0	0	0	0	0	7843	1798	62	0		0	IP6K2	3	48730708	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	1	48730708	149291722	17	39091	319	2								
FLNB	0	genome.wustl.edu	37	chr3	58124245	58124245	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttgatattcctaacagccccTtcactgtcatggtaaggaaa	7	10	2	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	58124245	58124245	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.5098	p.F1700V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	99	0	0	33	18	35.29	-	-	-	G	58124245	T	G	58124245	3	3	366	1	0	0	0	0	1	0	0	0	5980	1609	56	5	5309	5	FLNB	3	58124245	Missense_Mutation	SNP	T	TCGA-AR-A0TY-01A-12W-A12T-09	9393537	58124245	139898185	18	39092										
PVRL3	0	genome.wustl.edu	37	chr3	110845147	110845147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	taaagtgaccaattcccttgGtcaaagaagtgaccaaaaag	8	8	1	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	110845147	110845147	G	T	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	1	known	missense	c.1034	p.G345V	1.000	pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	543	0	0	319	96	23.13	-	-	-	T	110845147	G	T	110845147	3	4	366	1	0	0	0	0	1	0	0	0	12924	1261	44	4	1052	4	PVRL3	3	110845147	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	52720902	110845147	87177283	19	39093										
CPNE4	0	genome.wustl.edu	37	chr3	131388574	131388574	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	aatttacagatactttgaatGatttccaggctgggcttaag	9	6	0	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	131388574	131388574	G	T	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	nonsense	c.680	p.S227*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	176	0	0	108	43	28.48	-	-	-	T	131388574	G	T	131388574	4	4	366	1	0	0	0	0	0	1	0	0	3844	1294	45	2	1087	2	CPNE4	3	131388574	Nonsense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	20543427	131388574	66633856	20	39094										
CLDN11	0	genome.wustl.edu	37	chr3	170136900	170136900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgggcttcgtcacgagcttcGtgggctggatcggggtcatc	16	10	2	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	170136900	170136900	G	A	SNP	CLDN11	ENST00000064724	human	ensembl	69_37n	1	known	missense	c.46	p.V16M	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin11,prints_Claudin	-	no_errors	CLDN11	HGNC	ENSG00000013297	51	0	0	20	8	28.57	-	-	-	A	170136900	G	A	170136900	3	1	366	1	0	0	0	0	1	0	0	0	3503	1145	40	1	48	1	CLDN11	3	170136900	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	38748326	170136900	27885530	21	39095										
LETM1	0	genome.wustl.edu	37	chr4	1843235	1843236	+	Frame_Shift_Ins	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttcttcaccaccacctctgcINSgggggggctgtacaccgggc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	1843235	1843236	-	G	INS	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	frame_shift_ins	c.433_432	p.A144fs	0.000:0.000	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	141	0	0	96	13	11.93	-	-	-	G	1843236	-	G	1843235	7	5	366	1	0	1	1	0	0	0	0	0	8788	768	27	0	1834	0	LETM1	4	1843235	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		1843235	189311041	22	39096										
ADD1	0	genome.wustl.edu	37	chr4	2927786	2927786	+	Frame_Shift_Del	DEL	A	A	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gaaagaaaagagtcctccagAccagcctgcggtcccccacc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	2927786	2927786	A	-	DEL	ADD1	ENST00000264758	human	ensembl	69_37n	1	known	frame_shift_del	c.1901	p.D634fs	0.999	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	122	0	0	25	20	42.55	-	-	-	-	2927786	A	-	2927786	7	5	366	1	0	1	0	1	0	0	0	0	304	275	10	0	1951	0	ADD1	4	2927786	Frame_Shift_Del	DEL	A	TCGA-AR-A0TY-01A-12W-A12T-09	1084551	2927786	188226490	23	39097										
PLK4	0	genome.wustl.edu	37	chr4	128807873	128807873	+	Frame_Shift_Del	DEL	A	A	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cttttgaaagacctgataacAatcaagcactgtaagaataa							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	128807873	128807873	A	-	DEL	PLK4	ENST00000270861	human	ensembl	69_37n	1	known	frame_shift_del	c.1348	p.N450fs	0.094	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	207	0	0	39	19	31.67	-	-	-	-	128807873	A	-	128807873	7	5	366	1	0	1	0	1	0	0	0	0	12172	130	5	0	1366	0	PLK4	4	128807873	Frame_Shift_Del	DEL	A	TCGA-AR-A0TY-01A-12W-A12T-09	125880087	128807873	62346403	24	39098										
SEMA5A	0	genome.wustl.edu	37	chr5	9202176	9202176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	aggacgggagcagttcaggcGagccttcatgaatgtggtcc	15	9	2	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	9202176	9202176	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.823	p.R275S	0.975	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	235	0	0	88	50	36.23	-	-	-	T	9202176	G	T	9202176	3	4	366	1	0	0	0	0	1	0	0	0	14125	1058	37	3	2461	3	SEMA5A	5	9202176	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		9202176	171713084	25	39099										
CTNND2	0	genome.wustl.edu	37	chr5	11022988	11022988	+	Nonsense_Mutation	SNP	G	G	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	atcacttcgtgcagtgtgcaGcagacagctgtcactgtgtc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	11022988	11022988	G	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	nonsense	c.2892	p.C964*	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	735	1	0.14	518	166	24.27	-	-	-	T	11022988	G	T	11022988	4	4	366	1	0	0	0	0	0	1	0	0	4052	963	34	4	809	4	CTNND2	5	11022988	Nonsense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	1820812	11022988	169892272	26	39100	320	2								
CTNND2	0	genome.wustl.edu	37	chr5	11022989	11022989	+	Missense_Mutation	SNP	C	C	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tcacttcgtgcagtgtgcagCagacagctgtcactgtgtca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	11022989	11022989	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.2891	p.C964Y	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	742	0	0	518	164	24.05	-	-	-	T	11022989	C	T	11022989	3	4	366	1	0	0	0	0	1	0	0	0	4052	710	25	4	810	4	CTNND2	5	11022989	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	1	11022989	169892271	27	39101	320	2								
FGF10	0	genome.wustl.edu	37	chr5	44388528	44388528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caatcttgagaaagtacttgGtgaaagagaatagctttctc	9	6	2	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	44388528	44388528	G	A	SNP	FGF10	ENST00000264664	human	ensembl	69_37n	-1	known	missense	c.257	p.T86I	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF10	HGNC	ENSG00000070193	376	0	0	362	93	20.39	-	-	-	A	44388528	G	A	44388528	3	1	366	1	0	0	0	0	1	0	0	0	5885	1261	44	4	381	4	FGF10	5	44388528	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	33365539	44388528	136526732	28	39102										
PCDHA11	0	genome.wustl.edu	37	chr5	140250369	140250369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgctggacgagaacgacaacGcgccggcactgctggcgact	14	13	0	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	140250369	140250369	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1681	p.A561T	0.995	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	130	0	0	12	9	42.86	-	-	-	A	140250369	G	A	140250369	3	1	366	1	0	0	0	0	1	0	0	0	11594	1087	38	1	1683	1	PCDHA11	5	140250369	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	95861841	140250369	40664891	29	39103										
FGF18	0	genome.wustl.edu	37	chr5	170847438	170847438	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cacttcctgctgctgtgcttCcaggtacaggtacgtgggct	12	12	0	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	170847438	170847438	C	A	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	missense	c.60	p.F20L	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	197	0	0	49	10	16.95	-	-	-	A	170847438	C	A	170847438	3	1	366	1	0	0	0	0	1	0	0	0	5892	854	30	2	66	2	FGF18	5	170847438	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	30597069	170847438	10067822	30	39104										
RIPK1	0	genome.wustl.edu	37	chr6	3077011	3077012	+	RNA	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttacagggtacagctctgccINSggggggggaaaaagtggtac							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	3077011	3077012	-	G	INS	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	92	0	0	71	12	14.46	-	-	-	G	3077012	-	G	3077011	6	5	366	0	1	1	1	0	0	0	0	0	13466	667	23	0		0	RIPK1	6	3077011	RNA	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		3077011	168038056	31	39105										
GPR110	0	genome.wustl.edu	37	chr6	46976980	46976980	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccagttaagccaacacacatCtttccttttgtaggtattgc	6	11	1	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	46976980	46976980	C	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.2191	p.D731Y	0.080	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	378	0	0	134	73	35.27	-	-	-	A	46976980	C	A	46976980	3	1	366	1	0	0	0	0	1	0	0	0	6677	913	32	2	561	2	GPR110	6	46976980	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	43899969	46976980	124138087	32	39106										
PKHD1	0	genome.wustl.edu	37	chr6	51484109	51484110	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgctcttggccctccttccaINSgttcccagtctcttgcaggt							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	51484109	51484110	-	C	INS	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11995_11994	p.W3998fs	0.961:0.735	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	134	0	0	54	43	44.33	-	-	-	C	51484110	-	C	51484109	7	5	366	1	0	1	1	0	0	0	0	0	12045	188	7	0	233	0	PKHD1	6	51484109	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	4507129	51484109	119630958	33	39107										
SPDYE1	0	genome.wustl.edu	37	chr7	44047341	44047341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	acccagagcactgggtgtggGcgcgagatcgcgctcgcctt	15	13	0	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	44047341	44047341	G	A	SNP	SPDYE1	ENST00000258704	human	ensembl	69_37n	1	known	missense	c.985	p.A329T	0.393	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE1	HGNC	ENSG00000136206	172	0	0	30	17	35.42	-	-	-	A	44047341	G	A	44047341	3	1	366	1	0	0	0	0	1	0	0	0	15120	1203	42	4	1007	4	SPDYE1	7	44047341	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		44047341	115091322	34	39108										
FIGNL1	0	genome.wustl.edu	37	chr7	50514936	50514937	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agatgtaattgcgaagtaatINStcttctgccattcactcagg							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	50514936	50514937	-	C	INS	FIGNL1	ENST00000356889	human	ensembl	69_37n	-1	known	frame_shift_ins	c.50_49	p.N17fs	1.000:1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436	160	0	0	38	55	59.14	-	-	-	C	50514937	-	C	50514936	7	5	366	1	0	1	1	0	0	0	0	0	5938	1493	52	0	1978	0	FIGNL1	7	50514936	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	6467595	50514936	108623727	35	39109										
DLX6	0	genome.wustl.edu	37	chr7	96635577	96635577	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caccaccagcaccaccaccaCggctcgccctacgcgtcggg	9	21	0	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	96635577	96635577	C	A	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	missense	c.288	p.H96Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	21	0	0	7	4	36.36	-	-	-	A	96635577	C	A	96635577	3	1	366	1	0	0	0	0	1	0	0	0	4611	535	19	3	290	3	DLX6	7	96635577	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	46120641	96635577	62503086	36	39110										
RELN	0	genome.wustl.edu	37	chr7	103191642	103191642	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	acgtggctgctgctgtggtaGcagaggggcagcagaaggtg	19	7	0	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	103191642	103191642	G	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	nonsense	c.6174	p.C2058*	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	78	0	0	34	8	19.05	-	-	-	T	103191642	G	T	103191642	4	4	366	1	0	0	0	0	0	1	0	0	13303	963	34	4	4308	4	RELN	7	103191642	Nonsense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	6556065	103191642	55947021	37	39111										
SSPO	0	genome.wustl.edu	37	chr7	149501109	149501110	+	RNA	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctccaaccctccggcagcctINSgggggggtgccccgtgtgaa							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	149501109	149501110	-	G	INS	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	28	0	0	5	2	28.57	-	-	-	G	149501110	-	G	149501109	6	5	366	0	1	1	1	0	0	0	0	0	15280	1580	55	0		0	SSPO	7	149501109	RNA	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	46309467	149501109	9637554	38	39112										
ERLIN2	0	genome.wustl.edu	37	chr8	37607966	37607967	+	Frame_Shift_Ins	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cagaaacagaaggtggtggaINSaaaggaagcagagacagagc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607966	37607967	-	G	INS	ERLIN2	ENST00000276461	human	ensembl	69_37n	1	known	frame_shift_ins	c.611_612	p.E206fs	1.000:0.996	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	294	0	0	166	77	31.69	-	-	-	G	37607967	-	G	37607966	7	5	366	1	0	1	1	0	0	0	0	0	5270	246	9	0	680	0	ERLIN2	8	37607966	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		37607966	108756056	39	39113	321	3								
ERLIN2	0	genome.wustl.edu	37	chr8	37607972	37607972	+	Frame_Shift_Del	DEL	A	A	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	acagaaggtggtggaaaaggAagcagagacagagcggaaga							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607972	37607972	A	-	DEL	ERLIN2	ENST00000276461	human	ensembl	69_37n	1	known	frame_shift_del	c.617	p.A207fs	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	294	0	0	164	76	31.67	-	-	-	-	37607972	A	-	37607972	7	5	366	1	0	1	0	1	0	0	0	0	5270	246	9	0	686	0	ERLIN2	8	37607972	Frame_Shift_Del	DEL	A	TCGA-AR-A0TY-01A-12W-A12T-09	6	37607972	108756050	40	39114	321	3								
ERLIN2	0	genome.wustl.edu	37	chr8	37607975	37607976	+	Frame_Shift_Ins	INS	-	-	A													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	aaggtggtggaaaaggaagcINSagagacagagcggaagaagg							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607975	37607976	-	A	INS	ERLIN2	ENST00000276461	human	ensembl	69_37n	1	known	frame_shift_ins	c.620_621	p.E208fs	1.000:0.000	NULL	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	293	0	0	164	76	31.67	-	-	-	A	37607976	-	A	37607975	7	5	366	1	0	1	1	0	0	0	0	0	5270	710	25	0	689	0	ERLIN2	8	37607975	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	3	37607975	108756047	41	39115	321	3								
SULF1	0	genome.wustl.edu	37	chr8	70550743	70550743	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tttttacccaacagtgggatCtttctgtgcttgcacgagtt	9	9	2	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	70550743	70550743	C	A	SNP	SULF1	ENST00000260128	human	ensembl	69_37n	1	known	missense	c.2291	p.S764Y	0.918	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	618	0	0	448	329	41.91	-	-	-	A	70550743	C	A	70550743	3	1	366	1	0	0	0	0	1	0	0	0	15461	913	32	2	2353	2	SULF1	8	70550743	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	32942768	70550743	75813279	42	39116										
NAIF1	0	genome.wustl.edu	37	chr9	130825869	130825869	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gcagcctgtgtgccctccatGgcctgggcctggcgctcctg	14	16	0	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	130825869	130825869	G	T	SNP	NAIF1	ENST00000373078	human	ensembl	69_37n	-1	known	silent	c.822	p.A274	1.000	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	240	1	0.41	16	43	72.88	-	-	-	T	130825869	G	T	130825869	2	4	366	1	0	0	0	0	0	0	0	1	10218	1335	47	4		4	NAIF1	9	130825869	Silent	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		130825869	10387562	43	39117										
USP20	0	genome.wustl.edu	37	chr9	132623252	132623253	+	Frame_Shift_Del	DEL	CC	CC	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cccaccctctgaaagctgttCctattgctgtggctgatgaa							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	132623252	132623253	CC	-	DEL	USP20	ENST00000315480	human	ensembl	69_37n	1	known	frame_shift_del	c.367_368	p.P123fs	1.000:1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP20	HGNC	ENSG00000136878	248	0	0	14	103	85.83	-	-	-	-	132623253	CC	-	132623252	7	5	366	1	0	1	0	1	0	0	0	0	17149	855	30	0	385	0	USP20	9	132623252	Frame_Shift_Del	DEL	CC	TCGA-AR-A0TY-01A-12W-A12T-09	1797383	132623252	8590179	44	39118										
MED22	0	genome.wustl.edu	37	chr9	136208393	136208394	+	Frame_Shift_Ins	INS	-	-	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccagggccaccagcatgggaINSgtgggcaggggctgccacct							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	136208393	136208394	-	T	INS	MED22	ENST00000343730	human	ensembl	69_37n	-1	known	frame_shift_ins	c.565_564	p.S188fs	0.996:0.990	NULL	NULL	-	no_errors	MED22	HGNC	ENSG00000148297	54	0	0	10	2	16.67	-	-	-	T	136208394	-	T	136208393	7	5	366	1	0	1	1	0	0	0	0	0	9511	304	11	0	41	0	MED22	9	136208393	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	3585141	136208393	5005038	45	39119										
GATA3	0	genome.wustl.edu	37	chr10	8115952	8115953	+	Frame_Shift_Ins	INS	-	-	CC													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agcctgtcctttggaccacaINSccacccctccagcatggtca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	8115952	8115953	-	CC	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1301_1302	p.H435fs	1.000:0.946	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	217	0	0	90	38	29.69	-	-	-	CC	8115953	-	CC	8115952	7	5	366	1	0	1	1	0	0	0	0	0	6305	159	6	0	1319	0	GATA3	10	8115952	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		8115952	127418795	46	39120										
MRC1	0	genome.wustl.edu	37	chr10	18155569	18155569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tttgaaatgtgatgaaaaggCaaaatttgtgtgcaagcact	10	4	0	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	18155569	18155569	C	A	SNP	MRC1	ENST00000239761	human	ensembl	69_37n	1	known	missense	c.1862	p.A621E	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586	92	0	0	95	48	33.57	-	-	-	A	18155569	C	A	18155569	3	1	366	1	0	0	0	0	1	0	0	0	9828	710	25	4	6399	4	MRC1	10	18155569	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	10039617	18155569	117379178	47	39121										
PAPSS2	0	genome.wustl.edu	37	chr10	89505676	89505676	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccagatggcttcatggccccCaaagcatggaaggtcctgac	11	13	1	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	89505676	89505676	C	A	SNP	PAPSS2	ENST00000456849	human	ensembl	69_37n	1	known	silent	c.1809	p.P603	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	178	0	0	52	35	40.23	-	-	-	A	89505676	C	A	89505676	2	1	366	1	0	0	0	0	0	0	0	1	11508	581	21	4		4	PAPSS2	10	89505676	Silent	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	71350107	89505676	46029071	48	39122										
SLC18A2	0	genome.wustl.edu	37	chr10	119014791	119014792	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctttctctccctgcagtgggINScccccccttcgggagtgtgc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	119014791	119014792	-	C	INS	SLC18A2	ENST00000298472	human	ensembl	69_37n	1	known	frame_shift_ins	c.704_705	p.F238fs	1.000:0.136	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	168	0	0	52	6	10.34	-	-	-	C	119014792	-	C	119014791	7	5	366	1	0	1	1	0	0	0	0	0	14515	1203	42	0	726	0	SLC18A2	10	119014791	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	29509115	119014791	16519956	49	39123										
MUC5B	0	genome.wustl.edu	37	chr11	1257711	1257711	+	Frame_Shift_Del	DEL	C	C	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	atacgctacatggggatcttCctggtcatcgagacccacgg							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	1257711	1257711	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	frame_shift_del	c.2985	p.L996fs	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	86	0	0	4	2	33.33	-	-	-	-	1257711	C	-	1257711	7	5	366	1	0	1	0	1	0	0	0	0	10051	854	30	0	3079	0	MUC5B	11	1257711	Frame_Shift_Del	DEL	C	TCGA-AR-A0TY-01A-12W-A12T-09		1257711	133748805	50	39124										
MICAL2	0	genome.wustl.edu	37	chr11	12229617	12229617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tcaaggtggccctgatgctgGgagttgaaatccatgtgaat	13	7	1	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	12229617	12229617	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	missense	c.520	p.G174R	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	725	0	0	661	126	15.99	-	-	-	A	12229617	G	A	12229617	3	1	366	1	0	0	0	0	1	0	0	0	9641	1233	43	4	530	4	MICAL2	11	12229617	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	10971906	12229617	122776899	51	39125										
NELL1	0	genome.wustl.edu	37	chr11	21250897	21250897	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gaacacgatgaatgtggcagCggccagcacaactgtgatga	13	9	0	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	21250897	21250897	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	silent	c.1446	p.S482	0.001	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	194	0	0	58	35	37.23	-	-	-	T	21250897	C	T	21250897	2	4	366	1	0	0	0	0	0	0	0	1	10405	767	27	1		1	NELL1	11	21250897	Silent	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	9021280	21250897	113755619	52	39126										
PAX6	0	genome.wustl.edu	37	chr11	31823284	31823286	+	In_Frame_Del	DEL	TAA	TAA	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gtctgatggagccagtctcgTaatacctgcccagaatttta							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	31823284	31823286	TAA	-	DEL	PAX6	ENST00000379107	human	ensembl	69_37n	-1	known	in_frame_del	c.224_222	p.Y75in_frame_del	1.000:1.000:1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	401	0	0	204	126	38.18	-	-	-	-	31823286	TAA	-	31823284	7	5	366	1	0	1	0	1	0	0	0	0	11556	1638	57	0	1118	0	PAX6	11	31823284	In_Frame_Del	DEL	TAA	TCGA-AR-A0TY-01A-12W-A12T-09	10572387	31823284	103183232	53	39127										
ATG16L2	0	genome.wustl.edu	37	chr11	72535862	72535862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgtgtgtgtggctgcccgacTtcctacccgggctcaggatg	14	12	1	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	72535862	72535862	T	C	SNP	ATG16L2	ENST00000321297	human	ensembl	69_37n	1	known	missense	c.971	p.L324P	0.843	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	204	0	0	50	11	18.03	-	-	-	C	72535862	T	C	72535862	3	2	366	1	0	0	0	0	1	0	0	0	1096	1609	56	5	1005	5	ATG16L2	11	72535862	Missense_Mutation	SNP	T	TCGA-AR-A0TY-01A-12W-A12T-09	40712578	72535862	62470654	54	39128										
OR10G9	0	genome.wustl.edu	37	chr11	123894140	123894140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tgatgagtgggagcagatgtGccctcctggccaccagcact	13	12	0	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	123894140	123894140	G	A	SNP	OR10G9	ENST00000375024	human	ensembl	69_37n	1	known	missense	c.421	p.A141T	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981	350	0	0	185	124	40.13	-	-	-	A	123894140	G	A	123894140	3	1	366	1	0	0	0	0	1	0	0	0	10977	1319	46	4	423	4	OR10G9	11	123894140	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	51358278	123894140	11112376	55	39129										
LRRC10	0	genome.wustl.edu	37	chr12	70004164	70004164	+	Frame_Shift_Del	DEL	C	C	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gcaaacgcagggcgttggagCcggcatgcagagtcttaagg							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	70004164	70004164	C	-	DEL	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	frame_shift_del	c.455	p.G152fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	180	0	0	53	137	72.11	-	-	-	-	70004164	C	-	70004164	7	5	366	1	0	1	0	1	0	0	0	0	9033	739	26	0	382	0	LRRC10	12	70004164	Frame_Shift_Del	DEL	C	TCGA-AR-A0TY-01A-12W-A12T-09		70004164	63847731	56	39130										
EEA1	0	genome.wustl.edu	37	chr12	93170706	93170706	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccactttctattcaacgcttGtgtatgtttgatctgttttt	6	8	3	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	93170706	93170706	G	A	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	nonsense	c.4027	p.Q1343*	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	810	1	0.12	293	154	34.45	-	-	-	A	93170706	G	A	93170706	4	1	366	1	0	0	0	0	0	1	0	0	4956	1386	48	4	216	4	EEA1	12	93170706	Nonsense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	23166542	93170706	40681189	57	39131										
C12orf42	0	genome.wustl.edu	37	chr12	103695959	103695960	+	Frame_Shift_Ins	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	atggaaacgccgggttgggcINSgggggggtgctgaggagcaa							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	103695959	103695960	-	G	INS	C12orf42	ENST00000378113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1010_1009	p.R337fs	0.034:0.030	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	44	0	0	59	9	13.24	-	-	-	G	103695960	-	G	103695959	7	5	366	1	0	1	1	0	0	0	0	0	1700	768	27	0	76	0	C12orf42	12	103695959	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	10525253	103695959	30155936	58	39132										
KLHL1	0	genome.wustl.edu	37	chr13	70281926	70281927	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agtgtctgttttgggatcatINSatctaaaattcaatgacaat							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	13	70281926	70281927	-	C	INS	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2018_2017	p.Y673fs	1.000:1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	338	0	0	243	91	27.25	-	-	-	C	70281927	-	C	70281926	7	5	366	1	0	1	1	0	0	0	0	0	8418	1406	49	0	236	0	KLHL1	13	70281926	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		70281926	44887952	59	39133										
FAM70B	0	genome.wustl.edu	37	chr13	114498127	114498127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	tccttctgttgcagctggtgGcagcgatcgtgtttatcagt	12	9	2	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	13	114498127	114498127	G	T	SNP	FAM70B	ENST00000375353	human	ensembl	69_37n	1	known	missense	c.259	p.A87S	1.000	NULL	NULL	-	no_errors	FAM70B	HGNC	ENSG00000184497	396	1	0.25	288	166	36.4	-	-	-	T	114498127	G	T	114498127	3	4	366	1	0	0	0	0	1	0	0	0	5651	1203	42	4	273	4	FAM70B	13	114498127	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	44216201	114498127	671751	60	39134										
NYNRIN	0	genome.wustl.edu	37	chr14	24885799	24885799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caggtcgaccgccccctggtCgaacctgcagatcgaggtgg	14	14	0	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	14	24885799	24885799	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.4844	p.S1615L	0.788	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	104	0	0	20	10	33.33	-	-	-	T	24885799	C	T	24885799	3	4	366	1	0	0	0	0	1	0	0	0	10869	893	31	1	4874	1	NYNRIN	14	24885799	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09		24885799	82463741	61	39135										
KLC1	0	genome.wustl.edu	37	chr14	104121136	104121137	+	Frame_Shift_Ins	INS	-	-	A													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccggaagtcactggagatgtINStggagctcggcctgagtgag							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	14	104121136	104121137	-	A	INS	KLC1	ENST00000334553	human	ensembl	69_37n	1	known	frame_shift_ins	c.235_236	p.L79fs	0.812:1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	304	0	0	102	48	32	-	-	-	A	104121137	-	A	104121136	7	5	366	1	0	1	1	0	0	0	0	0	8386	1722	60	0	237	0	KLC1	14	104121136	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	79235337	104121136	3228404	62	39136										
RPAP1	0	genome.wustl.edu	37	chr15	41815547	41815549	+	In_Frame_Del	DEL	GCT	GCT	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agccaatcctccgggcatgaGcttggctggtggaccaagga							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	41815547	41815549	GCT	-	DEL	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	in_frame_del	c.2442_2440	p.S815in_frame_del	0.000:0.000:0.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	62	0	0	64	69	50	-	-	-	-	41815549	GCT	-	41815547	7	5	366	1	0	1	0	1	0	0	0	0	13627	962	34	0	1771	0	RPAP1	15	41815547	In_Frame_Del	DEL	GCT	TCGA-AR-A0TY-01A-12W-A12T-09		41815547	60715845	63	39137										
CRABP1	0	genome.wustl.edu	37	chr15	78633562	78633562	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cgtggacggacgcaagtgcaGggtgaggccccagagccact	16	12	0	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	78633562	78633562	G	C	SNP	CRABP1	ENST00000299529	human	ensembl	69_37n	1	known	missense	c.248	p.R83T	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP1	HGNC	ENSG00000166426	103	0	0	39	34	46.58	-	-	-	C	78633562	G	C	78633562	3	2	366	1	0	0	0	0	1	0	0	0	3873	1014	35	4	254	4	CRABP1	15	78633562	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	36818015	78633562	23897830	64	39138										
CRTC3	0	genome.wustl.edu	37	chr15	91185257	91185258	+	Frame_Shift_Ins	INS	-	-	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gacactccatttccactggaINSagaggagctgcagattgaac							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	91185257	91185258	-	T	INS	CRTC3	ENST00000268184	human	ensembl	69_37n	1	known	frame_shift_ins	c.1745_1746	p.E582fs	1.000:0.995	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577	124	0	0	36	37	50.68	-	-	-	T	91185258	-	T	91185257	7	5	366	1	0	1	1	0	0	0	0	0	3931	246	9	0	1803	0	CRTC3	15	91185257	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	12551695	91185257	11346135	65	39139										
HEATR3	0	genome.wustl.edu	37	chr16	50136311	50136311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ttcaaattaaattattatctGctctgaaagaattccagccg	5	8	3	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	50136311	50136311	G	C	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	1	known	missense	c.1885	p.A629P	0.974	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	298	0	0	109	82	42.71	-	-	-	C	50136311	G	C	50136311	3	2	366	1	0	0	0	0	1	0	0	0	7080	1319	46	4	1939	4	HEATR3	16	50136311	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		50136311	40218442	66	39140										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67859154	67859155	+	Frame_Shift_Ins	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gcggtaccagcgggaggacaINStgtcattagcccagtcgcca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	67859154	67859155	-	G	INS	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	1	known	frame_shift_ins	c.631_632	p.M211fs	1.000:1.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	213	0	0	68	30	30.61	-	-	-	G	67859155	-	G	67859154	7	5	366	1	0	1	1	0	0	0	0	0	16728	217	8	0	649	0	TSNAXIP1	16	67859154	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	17722843	67859154	22495599	67	39141										
TAF1C	0	genome.wustl.edu	37	chr16	84217059	84217059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctcggggccgcttccgatacCggcaccctccgcggaaaagc	12	17	0	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	84217059	84217059	C	T	SNP	TAF1C	ENST00000378541	human	ensembl	69_37n	-1	known	missense	c.275	p.R92Q	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168	132	0	0	15	9	37.5	-	-	-	T	84217059	C	T	84217059	3	4	366	1	0	0	0	0	1	0	0	0	15613	652	23	1	2378	1	TAF1C	16	84217059	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	16357905	84217059	6137694	68	39142										
ACSF3	0	genome.wustl.edu	37	chr16	89211720	89211721	+	Frame_Shift_Del	DEL	GG	GG	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccagtactggatccgaggccGgacctcagtggacatcatca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	89211720	89211721	GG	-	DEL	ACSF3	ENST00000317447	human	ensembl	69_37n	1	known	frame_shift_del	c.1412_1413	p.R471fs	1.000:0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	384	0	0	24	30	53.57	-	-	-	-	89211721	GG	-	89211720	7	5	366	1	0	1	0	1	0	0	0	0	176	1116	39	0	1438	0	ACSF3	16	89211720	Frame_Shift_Del	DEL	GG	TCGA-AR-A0TY-01A-12W-A12T-09	4994661	89211720	1143033	69	39143										
CCDC144A	0	genome.wustl.edu	37	chr17	16665677	16665677	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gtacagttaagggaggataaTactacttcaataaaaactca	7	6	2	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	16665677	16665677	T	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.3717	p.N1239K	0.678	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	347	0	0	58	19	24.68	-	-	-	A	16665677	T	A	16665677	3	1	366	1	0	0	0	0	1	0	0	0	2802	1403	49	5	3771	5	CCDC144A	17	16665677	Missense_Mutation	SNP	T	TCGA-AR-A0TY-01A-12W-A12T-09		16665677	64529533	70	39144										
FSCN2	0	genome.wustl.edu	37	chr17	79496124	79496124	+	Silent	SNP	T	T	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	cggtactgcctcaagtcctgTgacagccgctacctgcgcag							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	79496124	79496124	T	C	SNP	FSCN2	ENST00000334850	human	ensembl	69_37n	1	known	silent	c.567	p.C189	0.831	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	15	0	0	0	32	100	-	-	-	C	79496124	T	C	79496124	2	2	366	1	0	0	0	0	0	0	0	1	6117	1702	59	5		5	FSCN2	17	79496124	Silent	SNP	T	TCGA-AR-A0TY-01A-12W-A12T-09	62830447	79496124	1699086	71	39145	322	2								
FSCN2	0	genome.wustl.edu	37	chr17	79496125	79496125	+	Missense_Mutation	SNP	G	G	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ggtactgcctcaagtcctgtGacagccgctacctgcgcagc							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	79496125	79496125	G	C	SNP	FSCN2	ENST00000334850	human	ensembl	69_37n	1	known	missense	c.568	p.D190H	1.000	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	16	0	0	0	35	100	-	-	-	C	79496125	G	C	79496125	3	2	366	1	0	0	0	0	1	0	0	0	6117	1290	45	2	570	2	FSCN2	17	79496125	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	1	79496125	1699085	72	39146	322	2								
LAMA3	0	genome.wustl.edu	37	chr18	21426463	21426463	+	Frame_Shift_Del	DEL	C	C	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caggccactacggattcccaCgctgcaagcgtaagtgcacg							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	18	21426463	21426463	C	-	DEL	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	frame_shift_del	c.3922	p.R1308fs	0.032	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	52	0	0	15	2	11.76	-	-	-	-	21426463	C	-	21426463	7	5	366	1	0	1	0	1	0	0	0	0	8661	536	19	0	4044	0	LAMA3	18	21426463	Frame_Shift_Del	DEL	C	TCGA-AR-A0TY-01A-12W-A12T-09		21426463	56650785	73	39147										
ZNF556	0	genome.wustl.edu	37	chr19	2878290	2878290	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agcctttcaaggtcatgtgaGaagtcacacaggaaagaaat	10	7	3	2			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	2878290	2878290	G	A	SNP	ZNF556	ENST00000307635	human	ensembl	69_37n	1	known	missense	c.1334	p.R445K	0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000	100	0	0	20	11	35.48	-	-	-	A	2878290	G	A	2878290	3	1	366	1	0	0	0	0	1	0	0	0	18083	942	33	2	1348	2	ZNF556	19	2878290	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09		2878290	56250693	74	39148										
LRG1	0	genome.wustl.edu	37	chr19	4538291	4538292	+	Frame_Shift_Ins	INS	-	-	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agaggtagcgcaggtccggcINStgcggcaagaggagatcttt							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	4538291	4538292	-	T	INS	LRG1	ENST00000306390	human	ensembl	69_37n	-1	known	frame_shift_ins	c.705_704	p.P236fs	0.012:0.019	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	146	0	0	44	181	80.44	-	-	-	T	4538292	-	T	4538291	7	5	366	1	0	1	1	0	0	0	0	0	9008	796	28	0	342	0	LRG1	19	4538291	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	1660001	4538291	54590692	75	39149										
GCDH	0	genome.wustl.edu	37	chr19	13002750	13002750	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccgcacctactgccaggagaGactcatgcctcgcatcctgt	9	16	1	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	13002750	13002750	G	C	SNP	GCDH	ENST00000222214	human	ensembl	69_37n	1	known	missense	c.233	p.R78T	0.999	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607	154	0	0	114	67	37.02	-	-	-	C	13002750	G	C	13002750	3	2	366	1	0	0	0	0	1	0	0	0	6337	942	33	2	243	2	GCDH	19	13002750	Missense_Mutation	SNP	G	TCGA-AR-A0TY-01A-12W-A12T-09	8464459	13002750	46126233	76	39150										
MLL4	0	genome.wustl.edu	37	chr19	36224339	36224340	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	agcacctcccccatacaaagINSccccccggctggatgaagat							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	36224339	36224340	-	C	INS	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_ins	c.6889_6890	p.R2299fs	0.953:0.977	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	24	0	0	4	2	33.33	-	-	-	C	36224340	-	C	36224339	7	5	366	1	0	1	1	0	0	0	0	0	9694	971	34	0	6999	0	MLL4	19	36224339	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	23221589	36224339	22904644	77	39151										
CSRP2BP	0	genome.wustl.edu	37	chr20	18163939	18163940	+	Frame_Shift_Ins	INS	-	-	T													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	gtgtcaggagtttttttggcINSctggtatgttccccctccca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	18163939	18163940	-	T	INS	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	frame_shift_ins	c.1981_1982	p.P661fs	1.000:1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	310	0	0	194	826	80.98	-	-	-	T	18163940	-	T	18163939	7	5	366	1	0	1	1	0	0	0	0	0	4000	739	26	0	2011	0	CSRP2BP	20	18163939	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09		18163939	44861581	78	39152	323	2								
CSRP2BP	0	genome.wustl.edu	37	chr20	18163944	18163945	+	Splice_Site	DEL	TA	TA	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caggagtttttttggcctggTatgttccccctcccaaacca							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	18163944	18163945	TA	-	DEL	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	splice_site_del	c.1984+2_1984+1	e8+2	1.000:1.000	-	-	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	306	0	0	179	767	80.82	-	-	-	-	18163945	TA	-	18163944	8	5	366	1	0	1	0	1	0	0	1	0	4000	1652	57	0	2016	0	CSRP2BP	20	18163944	Splice_Site	DEL	TA	TCGA-AR-A0TY-01A-12W-A12T-09	5	18163944	44861576	79	39153	323	2								
NINL	0	genome.wustl.edu	37	chr20	25485550	25485550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctcgagtccctggagcccgaCgctctggcagaccacagcca	11	17	1	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	25485550	25485550	C	A	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.682	p.V228F	0.985	smart_EF_hand_Ca-bd	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	79	0	0	7	32	82.05	-	-	-	A	25485550	C	A	25485550	3	1	366	1	0	0	0	0	1	0	0	0	10492	536	19	3	3542	3	NINL	20	25485550	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	7321606	25485550	37539970	80	39154										
ADARB1	0	genome.wustl.edu	37	chr21	46604943	46604943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctccaatgcgagcatccaaaCgtgggacggggtgctgcaag	14	11	0	0			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	21	46604943	46604943	C	T	SNP	ADARB1	ENST00000360697	human	ensembl	69_37n	1	known	missense	c.1622	p.T541M	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,superfamily_Cytokine_IL1-like,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381	191	0	0	79	13	14.13	-	-	-	T	46604943	C	T	46604943	3	4	366	1	0	0	0	0	1	0	0	0	282	536	19	1	1648	1	ADARB1	21	46604943	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09		46604943	1524952	81	39155										
TRMT2A	0	genome.wustl.edu	37	chr22	20103700	20103700	+	Frame_Shift_Del	DEL	T	T	-													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctcaccctcctgtcgcctccTcctggccatggggtcggcct							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	22	20103700	20103700	T	-	DEL	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	frame_shift_del	c.460	p.R154fs	1.000	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	117	0	0	1	9	90	-	-	-	-	20103700	T	-	20103700	7	5	366	1	0	1	0	1	0	0	0	0	16661	1550	54	0	1461	0	TRMT2A	22	20103700	Frame_Shift_Del	DEL	T	TCGA-AR-A0TY-01A-12W-A12T-09		20103700	31200866	82	39156										
EIF2S3	0	genome.wustl.edu	37	chrX	24082440	24082440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	caagagactttacttcagagCcccggcttattggtaagtga	10	9	1	3			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	24082440	24082440	C	A	SNP	EIF2S3	ENST00000253039	human	ensembl	69_37n	1	known	missense	c.760	p.P254T	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EIF2S3	HGNC	ENSG00000130741	307	0	0	129	51	28.33	-	-	-	A	24082440	C	A	24082440	3	1	366	1	0	0	0	0	1	0	0	0	5046	739	26	4	786	4	EIF2S3	23	24082440	Missense_Mutation	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09		24082440	131188120	83	39157										
TFE3	0	genome.wustl.edu	37	chrX	48887951	48887952	+	Frame_Shift_Ins	INS	-	-	C													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ggggagcattctgggcaggtINScccccccctacatggaacgt							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	48887951	48887952	-	C	INS	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1446_1445	p.P483fs	0.035:0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	115	1	0.86	101	16	13.68	-	-	-	C	48887952	-	C	48887951	7	5	366	1	0	1	1	0	0	0	0	0	15895	1654	58	0	285	0	TFE3	23	48887951	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	24805511	48887951	106382609	84	39158										
MAGIX	0	genome.wustl.edu	37	chrX	49021387	49021387	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ctccgctggccgtgcgcgggCtgctgaaggatggcccagca	16	14	0	1			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	49021387	49021387	C	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	1	known	silent	c.466	p.L156	0.327	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	73	0	0	32	19	36.54	-	-	-	T	49021387	C	T	49021387	2	4	366	1	0	0	0	0	0	0	0	1	9264	796	28	4		4	MAGIX	23	49021387	Silent	SNP	C	TCGA-AR-A0TY-01A-12W-A12T-09	133436	49021387	106249173	85	39159										
PCDH19	0	genome.wustl.edu	37	chrX	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G													0.0379746835443038	3	0.656262759423648	1.48543689320388	2.97087378640777	1.18834951456311	1	1	0	ccaaggcgatcacgtagcccINSgggggggcgctctcgctgac							TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	112	0	0	22	4	15.38	-	-	-	G	99662505	-	G	99662504	7	5	366	1	0	1	1	0	0	0	0	0	11587	639	23	0	2378	0	PCDH19	23	99662504	Frame_Shift_Ins	INS	-	TCGA-AR-A0TY-01A-12W-A12T-09	50641117	99662504	55608056	86	39160										
PADI4	0	genome.wustl.edu	37	chr1	17682605	17682605	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	acgagttcctgagctttgtgCcagcacccgacaggaaggta	12	11	0	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	17682605	17682605	C	A	SNP	PADI4	ENST00000375448	human	ensembl	69_37n	1	known	missense	c.1438	p.P480T	0.999	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339	65	0	0	17	5	22.73	-	-	-	A	17682605	C	A	17682605	3	1	367	1	0	0	0	0	1	0	0	0	11453	739	26	4	1484	4	PADI4	1	17682605	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09		17682605	231568016	1	39161										
EIF4G3	0	genome.wustl.edu	37	chr1	21267868	21267869	+	Frame_Shift_Ins	INS	-	-	A													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aagaaaccagactaggaattINStcagcattcattcgatgttt							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	21267868	21267869	-	A	INS	EIF4G3	ENST00000356916	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1894_1893	p.*631fs	0.998:0.998	NULL	NULL	-	no_errors	EIF4G3	HGNC	ENSG00000075151	49	0	0	16	2	11.11	-	-	-	A	21267869	-	A	21267868	7	5	367	1	0	1	1	0	0	0	0	0	5075	1856	64	0		0	EIF4G3	1	21267868	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	3585263	21267868	227982753	2	39162										
RPE65	0	genome.wustl.edu	37	chr1	68895560	68895561	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gcattcagaatcaggagataINSagcaggcttttgtcctgctc							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	68895560	68895561	-	T	INS	RPE65	ENST00000262340	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1501_1500	p.Y500fs	1.000:0.658	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	61	0	0	9	2	18.18	-	-	-	T	68895561	-	T	68895560	7	5	367	1	0	1	1	0	0	0	0	0	13631	362	13	0	104	0	RPE65	1	68895560	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	47627692	68895560	180355061	3	39163										
SELL	0	genome.wustl.edu	37	chr1	169679648	169679648	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	tctgggtgctctgacatttcCatggaaatatctgcaaatga	9	8	3	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	169679648	169679648	C	T	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	nonsense	c.53	p.W18*	0.622	pirsf_L-selectin	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	150	0	0	43	5	10.42	-	-	-	T	169679648	C	T	169679648	4	4	367	1	0	0	0	0	0	1	0	0	14104	595	21	4	1136	4	SELL	1	169679648	Nonsense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	100784088	169679648	79570973	4	39164										
ASPM	0	genome.wustl.edu	37	chr1	197072768	197072769	+	In_Frame_Ins	INS	-	-	TAT													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cagctgcctttgtcttcaaaINSaaatgtgttcttgtatcatg							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	197072768	197072769	-	TAT	INS	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	in_frame_ins	c.5613_5612	p.F1871in_frame_insLY	0.012:0.046	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	145	0	0	37	6	13.95	-	-	-	TAT	197072769	-	TAT	197072768	7	5	367	1	0	1	1	0	0	0	0	0	1060	11	1	0	4864	0	ASPM	1	197072768	In_Frame_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	27393120	197072768	52177853	5	39165	324	2								
ASPM	0	genome.wustl.edu	37	chr1	197072773	197072774	+	Frame_Shift_Ins	INS	-	-	ATTC													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gcctttgtcttcaaaaaatgINStgttcttgtatcatgaagag							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	1	197072773	197072774	-	ATTC	INS	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5608_5607	p.H1869fs	0.000:0.000	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	150	0	0	39	5	11.36	-	-	-	ATTC	197072774	-	ATTC	197072773	7	5	367	1	0	1	1	0	0	0	0	0	1060	1377	48	0	4869	0	ASPM	1	197072773	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	5	197072773	52177848	6	39166	324	2								
LONRF2	0	genome.wustl.edu	37	chr2	100910844	100910844	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	caaagatggggacgtctctgGtcagactgcagagcaagggg	16	8	2	3			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	100910844	100910844	G	T	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	missense	c.1604	p.T535N	1.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	96	0	0	26	5	16.13	-	-	-	T	100910844	G	T	100910844	3	4	367	1	0	0	0	0	1	0	0	0	8961	1261	44	4	676	4	LONRF2	2	100910844	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09		100910844	142288529	7	39167										
TTN	0	genome.wustl.edu	37	chr2	179593823	179593823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	ataggaggagaacctgccacGgtactctgaaaggtggcaga	14	8	1	3			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	179593823	179593823	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.15210	p.T5070	0.002	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	161	0	0	31	5	13.89	-	-	-	A	179593823	G	A	179593823	2	1	367	1	0	0	0	0	0	0	0	1	16832	1103	39	1		1	TTN	2	179593823	Silent	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	78682979	179593823	63605550	8	39168										
TTN	0	genome.wustl.edu	37	chr2	179650411	179650411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	taaagtgagggctagctgtgCgggggcgtttatccacatgg	16	7	0	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	179650411	179650411	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.2429	p.R810H	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	269	0	0	42	13	23.64	-	-	-	T	179650411	C	T	179650411	3	4	367	1	0	0	0	0	1	0	0	0	16832	768	27	1	108951	1	TTN	2	179650411	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	56588	179650411	63548962	9	39169										
CUL3	0	genome.wustl.edu	37	chr2	225368387	225368388	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cctttaacttagatatcatgINStttttttcagagtcatcaga							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	225368387	225368388	-	T	INS	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1359_1358	p.N453fs	0.993:1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	306	0	0	116	41	26.11	-	-	-	T	225368388	-	T	225368387	7	5	367	1	0	1	1	0	0	0	0	0	4087	1368	48	0	979	0	CUL3	2	225368387	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	45717976	225368387	17830986	10	39170										
DOCK10	0	genome.wustl.edu	37	chr2	225702539	225702539	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	tggcacttggccacaatgtcGgtcagaaccctgcaaaagca	10	12	1	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	225702539	225702539	G	C	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	silent	c.2790	p.T930	0.033	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	89	0	0	18	5	21.74	-	-	-	C	225702539	G	C	225702539	2	2	367	1	0	0	0	0	0	0	0	1	4720	1103	39	3		3	DOCK10	2	225702539	Silent	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	334152	225702539	17496834	11	39171										
RHBDD1	0	genome.wustl.edu	37	chr2	227731981	227731981	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	attttgggctttcctgtaccGaacagatttgcttgttgggt	11	7	0	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	2	227731981	227731981	G	T	SNP	RHBDD1	ENST00000341329	human	ensembl	69_37n	1	known	silent	c.513	p.P171	0.979	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD1	HGNC	ENSG00000144468	349	0	0	139	27	16.27	-	-	-	T	227731981	G	T	227731981	2	4	367	1	0	0	0	0	0	0	0	1	13400	1045	37	3		3	RHBDD1	2	227731981	Silent	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	2029442	227731981	15467392	12	39172										
MST1	0	genome.wustl.edu	37	chr3	49726070	49726070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	agtcagaagcagcaggagtgGgagccaccccatccttctgg	13	12	2	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	3	49726070	49726070	G	A	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.55	p.P19S	0.908	NULL	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	35	0	0	13	3	18.75	-	-	-	A	49726070	G	A	49726070	3	1	367	1	0	0	0	0	1	0	0	0	9962	1232	43	4	2194	4	MST1	3	49726070	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09		49726070	148296360	13	39173										
ZBTB38	0	genome.wustl.edu	37	chr3	141164487	141164488	+	Frame_Shift_Ins	INS	-	-	A													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	accctcaaaatccatgaaagINSaatccatactggagaaaagc							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	3	141164487	141164488	-	A	INS	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	frame_shift_ins	c.3260_3261	p.I1088fs	0.434:0.417	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	65	0	0	5	2	28.57	-	-	-	A	141164488	-	A	141164487	7	5	367	1	0	1	1	0	0	0	0	0	17635	942	33	0	3259	0	ZBTB38	3	141164487	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	91438417	141164487	56857943	14	39174										
FXR1	0	genome.wustl.edu	37	chr3	180669241	180669241	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gatgaagatactggaacattCagaatctacggagaggtaag	12	5	2	4			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	3	180669241	180669241	C	A	SNP	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	missense	c.786	p.F262L	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	140	0	0	49	7	12.5	-	-	-	A	180669241	C	A	180669241	3	1	367	1	0	0	0	0	1	0	0	0	6164	825	29	2	816	2	FXR1	3	180669241	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	39504754	180669241	17353189	15	39175										
C3orf70	0	genome.wustl.edu	37	chr3	184801097	184801097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cattctgtgggaatgtggtgCcggctgcttctgcacataac	12	10	2	0			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	3	184801097	184801097	C	T	SNP	C3orf70	ENST00000335012	human	ensembl	69_37n	-1	known	missense	c.451	p.A151T	0.001	NULL	NULL	-	no_errors	C3orf70	HGNC	ENSG00000187068	144	0	0	45	7	13.21	-	-	-	T	184801097	C	T	184801097	3	4	367	1	0	0	0	0	1	0	0	0	2262	739	26	4	305	4	C3orf70	3	184801097	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	4131856	184801097	13221333	16	39176										
EHHADH	0	genome.wustl.edu	37	chr3	184910162	184910162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	atttctgcaatttctctagaActgtgggcaacccaactgtg	8	10	2	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	3	184910162	184910162	A	G	SNP	EHHADH	ENST00000231887	human	ensembl	69_37n	-1	known	missense	c.2024	p.V675A	0.960	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790	129	0	0	19	16	45.71	-	-	-	G	184910162	A	G	184910162	3	3	367	1	0	0	0	0	1	0	0	0	5017	43	2	5	151	5	EHHADH	3	184910162	Missense_Mutation	SNP	A	TCGA-AR-A0U0-01A-11D-A10G-09	109065	184910162	13112268	17	39177										
DSPP	0	genome.wustl.edu	37	chr4	88536082	88536082	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	agcaacagcagtgacagtagCgatagcagtgacagcagcaa	12	9	0	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	4	88536082	88536082	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.2268	p.S756	0.583	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	221	0	0	29	9	23.68	-	-	-	T	88536082	C	T	88536082	2	4	367	1	0	0	0	0	0	0	0	1	4817	767	27	1		1	DSPP	4	88536082	Silent	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09		88536082	102618194	18	39178										
KIAA1109	0	genome.wustl.edu	37	chr4	123260542	123260543	+	Frame_Shift_Ins	INS	-	-	TC													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gagtggaacaaagacttctgINSctagcaaaactggaatacca							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	4	123260542	123260543	-	TC	INS	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	frame_shift_ins	c.12331_12332	p.A4111fs	0.000:0.001	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	106	0	0	11	3	21.43	-	-	-	TC	123260543	-	TC	123260542	7	5	367	1	0	1	1	0	0	0	0	0	8260	1319	46	0	12609	0	KIAA1109	4	123260542	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	34724460	123260542	67893734	19	39179										
GALNTL6	0	genome.wustl.edu	37	chr4	172735562	172735562	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aactgtgcgtttgttctgcaGatggccaactccctctgaat	9	11	2	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	4	172735562	172735562	G	A	SNP	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	GALNTL6	HGNC	ENSG00000174473	41	0	0	33	8	19.51	-	-	-	A	172735562	G	A	172735562	5	1	367	1	0	0	0	0	0	0	1	0	6275	956	33	2		2	GALNTL6	4	172735562	Splice_Site	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	49475020	172735562	18418714	20	39180										
CMYA5	0	genome.wustl.edu	37	chr5	79025522	79025523	+	Frame_Shift_Ins	INS	-	-	C													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cgcactctccaaaggatcagINSagtccctaaccttaatgttc							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	5	79025522	79025523	-	C	INS	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	frame_shift_ins	c.934_935	p.E312fs	0.000:0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	52	0	0	10	2	16.67	-	-	-	C	79025523	-	C	79025522	7	5	367	1	0	1	1	0	0	0	0	0	3620	943	33	0	940	0	CMYA5	5	79025522	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		79025522	101889738	21	39181										
FNIP1	0	genome.wustl.edu	37	chr5	131014737	131014737	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	catactgatttttggaagcaTtttccattagaaaggtgaac	8	6	0	3			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	5	131014737	131014737	T	C	SNP	FNIP1	ENST00000510461	human	ensembl	69_37n	-1	known	missense	c.1334	p.N445S	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	92	0	0	20	9	31.03	-	-	-	C	131014737	T	C	131014737	3	2	367	1	0	0	0	0	1	0	0	0	6021	1493	52	5	2194	5	FNIP1	5	131014737	Missense_Mutation	SNP	T	TCGA-AR-A0U0-01A-11D-A10G-09	51989215	131014737	49900523	22	39182										
RIPK1	0	genome.wustl.edu	37	chr6	3077011	3077012	+	RNA	INS	-	-	G													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	ttacagggtacagctctgccINSggggggggaaaaagtggtac							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	6	3077011	3077012	-	G	INS	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	33	0	0	30	11	26.83	-	-	-	G	3077012	-	G	3077011	6	5	367	0	1	1	1	0	0	0	0	0	13466	667	23	0		0	RIPK1	6	3077011	RNA	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		3077011	168038056	23	39183										
DNAH8	0	genome.wustl.edu	37	chr6	38834385	38834385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	agaaccctggatatgctgggCgccaggaactaccagaaaac	11	11	0	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	6	38834385	38834385	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.5866	p.R1956C	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	128	0	0	35	26	42.62	-	-	-	T	38834385	C	T	38834385	3	4	367	1	0	0	0	0	1	0	0	0	4642	768	27	1	6032	1	DNAH8	6	38834385	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	35757374	38834385	132280682	24	39184										
ICK	0	genome.wustl.edu	37	chr6	52878680	52878680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	taatataaggaggtgggcctGccttttccaggatgcctttc	11	9	0	0			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	6	52878680	52878680	G	A	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	missense	c.932	p.A311V	0.105	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	250	0	0	88	24	21.43	-	-	-	A	52878680	G	A	52878680	3	1	367	1	0	0	0	0	1	0	0	0	7538	1319	46	4	990	4	ICK	6	52878680	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	14044295	52878680	118236387	25	39185										
MYCT1	0	genome.wustl.edu	37	chr6	153043015	153043015	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gtggagttcaagcaggagatCtaggtcttcttacacccacg	11	10	4	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	6	153043015	153043015	C	A	SNP	MYCT1	ENST00000367245	human	ensembl	69_37n	1	known	missense	c.335	p.S112Y	0.083	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	124	0	0	31	9	22.5	-	-	-	A	153043015	C	A	153043015	3	1	367	1	0	0	0	0	1	0	0	0	10094	913	32	2	341	2	MYCT1	6	153043015	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	100164335	153043015	18072052	26	39186										
CNTNAP2	0	genome.wustl.edu	37	chr7	147600781	147600782	+	Frame_Shift_Ins	INS	-	-	A													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	actgcacagatcccaagtacINStactgtaactgcgacgcgga							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	7	147600781	147600782	-	A	INS	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	frame_shift_ins	c.2223_2224	p.Y741fs	1.000:1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	64	0	0	7	4	36.36	-	-	-	A	147600782	-	A	147600781	7	5	367	1	0	1	1	0	0	0	0	0	3677	576	20	0	2277	0	CNTNAP2	7	147600781	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		147600781	11537882	27	39187										
MLL3	0	genome.wustl.edu	37	chr7	151927054	151927054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aacactgaccacactgagaaCaggcaagtaatcttccttct	6	12	2	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	7	151927054	151927054	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.2930	p.C977Y	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	317	0	0	69	11	13.75	-	-	-	T	151927054	C	T	151927054	3	4	367	1	0	0	0	0	1	0	0	0	9693	478	17	4	11973	4	MLL3	7	151927054	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	4326273	151927054	7211609	28	39188										
PKD2L1	0	genome.wustl.edu	37	chr10	102049824	102049824	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	tctccagcattttcagctttGagcctacagcatcaatctgg	7	12	4	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	10	102049824	102049824	G	C	SNP	PKD2L1	ENST00000318222	human	ensembl	69_37n	-1	known	nonsense	c.2198	p.S733*	0.391	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593	54	0	0	21	10	32.26	-	-	-	C	102049824	G	C	102049824	4	2	367	1	0	0	0	0	0	1	0	0	12041	1294	45	2	231	2	PKD2L1	10	102049824	Nonsense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09		102049824	33484923	29	39189										
COL17A1	0	genome.wustl.edu	37	chr10	105792444	105792444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	acacttacctttgtctccttTttctcccttgtgtcctcgag	5	14	2	0			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	10	105792444	105792444	T	G	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.4426	p.K1476Q	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	61	0	0	14	7	33.33	-	-	-	G	105792444	T	G	105792444	3	3	367	1	0	0	0	0	1	0	0	0	3704	1850	64	5	75	5	COL17A1	10	105792444	Missense_Mutation	SNP	T	TCGA-AR-A0U0-01A-11D-A10G-09	3742620	105792444	29742303	30	39190										
ARID2	0	genome.wustl.edu	37	chr12	46245859	46245860	+	Frame_Shift_Ins	INS	-	-	G													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	attcaaagtgagactaatcaINSgtgctcactaatcagtaatg							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	12	46245859	46245860	-	G	INS	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	frame_shift_ins	c.3953_3954	p.C1319fs	1.000:1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	72	0	0	19	11	36.67	-	-	-	G	46245860	-	G	46245859	7	5	367	1	0	1	1	0	0	0	0	0	917	188	7	0	4011	0	ARID2	12	46245859	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		46245859	87606036	31	39191										
ATP12A	0	genome.wustl.edu	37	chr13	25264568	25264568	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gaggtcaaaggaggagaccaGatccctgcagacatcagggt	14	9	2	3			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	13	25264568	25264568	G	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	missense	c.639	p.Q213H	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	75	0	0	30	6	16.67	-	-	-	T	25264568	G	T	25264568	3	4	367	1	0	0	0	0	1	0	0	0	1126	933	33	2	661	2	ATP12A	13	25264568	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09		25264568	89905310	32	39192										
NBEA	0	genome.wustl.edu	37	chr13	35644134	35644135	+	Frame_Shift_Del	DEL	TG	TG	-													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gggaaacttgcaagtagcatTgcctttacatataatgctaa							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	13	35644134	35644135	TG	-	DEL	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	frame_shift_del	c.1329_1330	p.A444fs	0.510:1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	142	0	0	10	5	33.33	-	-	-	-	35644135	TG	-	35644134	7	5	367	1	0	1	0	1	0	0	0	0	10259	1800	63	0	1363	0	NBEA	13	35644134	Frame_Shift_Del	DEL	TG	TCGA-AR-A0U0-01A-11D-A10G-09	10379566	35644134	79525744	33	39193										
SLITRK6	0	genome.wustl.edu	37	chr13	86369964	86369965	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	caaccaagtttttaactgcaINSataagtcacaattgcaggcc							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	13	86369964	86369965	-	T	INS	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.L227fs	0.096:0.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	86	0	0	13	2	13.33	-	-	-	T	86369965	-	T	86369964	7	5	367	1	0	1	1	0	0	0	0	0	14836	131	5	0	1849	0	SLITRK6	13	86369964	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	50725830	86369964	28799914	34	39194										
ZNF200	0	genome.wustl.edu	37	chr16	3274374	3274374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aagggcaataatactgatgtCtacatattttgagagttcct	8	6	1	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	16	3274374	3274374	C	G	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	missense	c.706	p.D236H	0.985	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	172	0	0	98	20	16.95	-	-	-	G	3274374	C	G	3274374	3	3	367	1	0	0	0	0	1	0	0	0	17858	913	32	2	485	2	ZNF200	16	3274374	Missense_Mutation	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09		3274374	87080379	35	39195										
C16orf62	0	genome.wustl.edu	37	chr16	19656250	19656250	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aaaagaatgctgtcatatttGattaatggatttataaaaat	6	2	1	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	16	19656250	19656250	G	C	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	missense	c.2175	p.L725F	0.999	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	183	0	0	125	24	16.11	-	-	-	C	19656250	G	C	19656250	3	2	367	1	0	0	0	0	1	0	0	0	1838	1281	45	2	1998	2	C16orf62	16	19656250	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	16381876	19656250	70698503	36	39196										
VWA3A	0	genome.wustl.edu	37	chr16	22126692	22126692	+	Frame_Shift_Del	DEL	A	A	-													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	caggaacttaagctctgggtAaagacgctgcagcctgatgg							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	16	22126692	22126692	A	-	DEL	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	frame_shift_del	c.714	p.K239fs	0.052	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	47	0	0	12	2	14.29	-	-	-	-	22126692	A	-	22126692	7	5	367	1	0	1	0	1	0	0	0	0	17337	349	13	0	748	0	VWA3A	16	22126692	Frame_Shift_Del	DEL	A	TCGA-AR-A0U0-01A-11D-A10G-09	2470442	22126692	68228061	37	39197										
CHD9	0	genome.wustl.edu	37	chr16	53190160	53190161	+	Frame_Shift_Ins	INS	-	-	TT													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cgttgcacatagattcactgINSaaccatgttcaaggtactcc							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	16	53190160	53190161	-	TT	INS	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	frame_shift_ins	c.159_160	p.N53fs	0.997:1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	154	0	0	36	4	10	-	-	-	TT	53190161	-	TT	53190160	7	5	367	1	0	1	1	0	0	0	0	0	3361	1277	45	0	161	0	CHD9	16	53190160	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	31063468	53190160	37164593	38	39198										
TP53	0	genome.wustl.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	144	0	0	59	49	45.37	-	-	-	C	7578268	A	C	7578268	3	2	367	1	0	0	0	0	1	0	0	0	16477	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-AR-A0U0-01A-11D-A10G-09		7578268	73616942	39	39199										
EMILIN2	0	genome.wustl.edu	37	chr18	2891304	2891304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	ctacaggagccttcagcccaGgcaaattgctgcgacagtga	11	12	1	1			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	18	2891304	2891304	G	A	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	silent	c.1179	p.Q393	0.000	NULL	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	53	0	0	23	19	45.24	-	-	-	A	2891304	G	A	2891304	2	1	367	1	0	0	0	0	0	0	0	1	5131	991	35	4		4	EMILIN2	18	2891304	Silent	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09		2891304	75185944	40	39200										
C18orf34	0	genome.wustl.edu	37	chr18	30803162	30803162	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	tcttctaataagatctttctGatcaattatattattaagca	3	6	5	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	18	30803162	30803162	G	C	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	missense	c.1840	p.Q614E	0.002	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	265	0	0	99	12	10.71	-	-	-	C	30803162	G	C	30803162	3	2	367	1	0	0	0	0	1	0	0	0	1919	1299	45	2	787	2	C18orf34	18	30803162	Missense_Mutation	SNP	G	TCGA-AR-A0U0-01A-11D-A10G-09	27911858	30803162	47274086	41	39201										
ZNF737	0	genome.wustl.edu	37	chr19	20727402	20727403	+	Frame_Shift_Ins	INS	-	-	GG													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	ccacattcctcacatttataINSgtttctctccagtatgaatt							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	19	20727402	20727403	-	GG	INS	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1607_1606	p.L536fs	0.161:0.990	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	73	0	0	14	2	12.5	-	-	-	GG	20727403	-	GG	20727402	7	5	367	1	0	1	1	0	0	0	0	0	18220	420	15	0	7	0	ZNF737	19	20727402	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		20727402	38401581	42	39202										
ZNF28	0	genome.wustl.edu	37	chr19	53304396	53304396	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	ttctcttctaagtgggttatCtgatgtttttttaaaagtga	8	4	3	2			TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	19	53304396	53304396	C	T	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	silent	c.702	p.Q234	0.054	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	209	0	0	130	29	18.24	-	-	-	T	53304396	C	T	53304396	2	4	367	1	0	0	0	0	0	0	0	1	17909	912	32	2		2	ZNF28	19	53304396	Silent	SNP	C	TCGA-AR-A0U0-01A-11D-A10G-09	32576994	53304396	5824587	43	39203										
ZNF583	0	genome.wustl.edu	37	chr19	56934755	56934756	+	Frame_Shift_Ins	INS	-	-	AA													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	gagaaaccctatgcatgtgtINStgaatgtgggaaaacgttca							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	19	56934755	56934756	-	AA	INS	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	frame_shift_ins	c.728_729	p.E244fs	0.000:0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	59	0	0	24	3	11.11	-	-	-	AA	56934756	-	AA	56934755	7	5	367	1	0	1	1	0	0	0	0	0	18111	1725	60	0	742	0	ZNF583	19	56934755	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	3630359	56934755	2194228	44	39204										
BMX	0	genome.wustl.edu	37	chrX	15552336	15552337	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	cattctttctgttactagtgINSataaaaaaggaactgtcaaa							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	X	15552336	15552337	-	T	INS	BMX	ENST00000342014	human	ensembl	69_37n	1	known	frame_shift_ins	c.1021_1022	p.D341fs	1.000:0.999	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	194	0	0	19	3	13.64	-	-	-	T	15552337	-	T	15552336	7	5	367	1	0	1	1	0	0	0	0	0	1478	1304	45	0	1063	0	BMX	23	15552336	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09		15552336	139718224	45	39205										
GPR112	0	genome.wustl.edu	37	chrX	135427084	135427085	+	Frame_Shift_Ins	INS	-	-	TT													0.133333333333333	6	0.20518544722793	2.06550802139037	4.68181818181818	0.975378787878788	0.619909502262444	1	0	aacatctttattttcaactaINSttgagtcaacatctatgtct							TCGA-AR-A0U0-01A-11D-A10G-09	TCGA-AR-A0U0-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	79e2c073-7727-4c34-ac28-5d7895144743	4300938a-51ef-4124-b665-cf8cbebeeb0e	X	135427084	135427085	-	TT	INS	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	frame_shift_ins	c.1219_1220	p.E408fs	0.000:0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	64	0	0	16	2	11.11	-	-	-	TT	135427085	-	TT	135427084	7	5	367	1	0	1	1	0	0	0	0	0	6679	449	16	0	1229	0	GPR112	23	135427084	Frame_Shift_Ins	INS	-	TCGA-AR-A0U0-01A-11D-A10G-09	119874748	135427084	19843476	46	39206										
NECAP2	0	genome.wustl.edu	37	chr1	16770220	16770220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tacatcaagctggaggacagGacgtcaggtaaccggaaggg	15	8	2	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	16770220	16770220	G	T	SNP	NECAP2	ENST00000443980	human	ensembl	69_37n	1	known	missense	c.186	p.R62S	0.990	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191	50	0	0	62	10	13.89	-	-	-	T	16770220	G	T	16770220	3	4	368	1	0	0	0	0	1	0	0	0	10380	1165	41	2	192	2	NECAP2	1	16770220	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		16770220	232480401	1	39207										
EIF3I	0	genome.wustl.edu	37	chr1	32694340	32694340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ctctccagctttttgactccAcaactcttgaacatcagaag	5	13	3	3			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	32694340	32694340	A	G	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	missense	c.652	p.T218A	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	95	0	0	117	25	17.48	-	-	-	G	32694340	A	G	32694340	3	3	368	1	0	0	0	0	1	0	0	0	5056	159	6	5	682	5	EIF3I	1	32694340	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	15924120	32694340	216556281	2	39208										
HIVEP3	0	genome.wustl.edu	37	chr1	41976178	41976178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tggatgtgccctgggctcccCacttcctgagggcttggggg	16	12	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	41976178	41976178	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.7165	p.G2389R	0.893	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	24	0	0	35	8	18.6	-	-	-	T	41976178	C	T	41976178	3	4	368	1	0	0	0	0	1	0	0	0	7239	594	21	4	59	4	HIVEP3	1	41976178	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	9281838	41976178	207274443	3	39209										
PSMA5	0	genome.wustl.edu	37	chr1	109952632	109952632	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgatggcttctttcaaagtcAtagacttgaaacaaagaagg	9	6	3	4			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	109952632	109952632	A	C	SNP	PSMA5	ENST00000271308	human	ensembl	69_37n	-1	known	missense	c.566	p.M189R	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA5	HGNC	ENSG00000143106	434	1	0.23	180	49	21.4	-	-	-	C	109952632	A	C	109952632	3	2	368	1	0	0	0	0	1	0	0	0	12750	217	8	5	167	5	PSMA5	1	109952632	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	67976454	109952632	139297989	4	39210										
KIAA0907	0	genome.wustl.edu	37	chr1	155903461	155903461	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gagttggtttcagcttccctTttgccatgagcatggcatta	10	9	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	155903461	155903461	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	missense	c.218	p.K73R	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	93	0	0	99	11	10	-	-	-	C	155903461	T	C	155903461	3	2	368	1	0	0	0	0	1	0	0	0	8251	1841	64	5	1678	5	KIAA0907	1	155903461	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	45950829	155903461	93347160	5	39211										
PEAR1	0	genome.wustl.edu	37	chr1	156883814	156883814	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ccaggcagcctcctcagttcTgggacagccagaggcggcgg	15	14	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	156883814	156883814	T	A	SNP	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	missense	c.2884	p.W962R	0.084	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	19	0	0	31	14	31.11	-	-	-	A	156883814	T	A	156883814	3	1	368	1	0	0	0	0	1	0	0	0	11785	1580	55	5	2966	5	PEAR1	1	156883814	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	980353	156883814	92366807	6	39212										
UAP1	0	genome.wustl.edu	37	chr1	162557384	162557384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gctcaaaaacgaagctcagaCggacgactgctgttcaatgc	10	11	3	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	162557384	162557384	C	G	SNP	UAP1	ENST00000271469	human	ensembl	69_37n	1	known	missense	c.954	p.D318E	0.996	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143	160	0	0	130	16	10.96	-	-	-	G	162557384	C	G	162557384	3	3	368	1	0	0	0	0	1	0	0	0	16922	535	19	3	972	3	UAP1	1	162557384	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	5673570	162557384	86693237	7	39213										
SLC45A3	0	genome.wustl.edu	37	chr1	205628387	205628387	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ctgagtatttggccaagtcgCtcttgtcaaatactacctgt	8	10	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	205628387	205628387	C	G	SNP	SLC45A3	ENST00000367145	human	ensembl	69_37n	-1	known	missense	c.1637	p.S546T	0.826	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715	15	0	0	36	26	41.94	-	-	-	G	205628387	C	G	205628387	3	3	368	1	0	0	0	0	1	0	0	0	14731	797	28	4	28	4	SLC45A3	1	205628387	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	43071003	205628387	43622234	8	39214										
PTPN14	0	genome.wustl.edu	37	chr1	214557148	214557148	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	agggagctgggggacctcgtGgctgcctgacccctcctcgg	16	14	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	214557148	214557148	G	C	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.2050	p.H684D	0.989	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	18	0	0	62	15	19.48	-	-	-	C	214557148	G	C	214557148	3	2	368	1	0	0	0	0	1	0	0	0	12864	1348	47	4	1541	4	PTPN14	1	214557148	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	8928761	214557148	34693473	9	39215										
SIPA1L2	0	genome.wustl.edu	37	chr1	232650538	232650538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgtgcagggcagccccggtgTtggggttgactgcattttgg	17	8	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	232650538	232650538	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.548	p.N183S	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	141	1	0.7	182	31	14.55	-	-	-	C	232650538	T	C	232650538	3	2	368	1	0	0	0	0	1	0	0	0	14419	1725	60	5	4704	5	SIPA1L2	1	232650538	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	18093390	232650538	16600083	10	39216										
GALNT5	0	genome.wustl.edu	37	chr2	158152231	158152231	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gtaacgttggttggttggaaCctcttctggaaagagtttat	12	5	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	158152231	158152231	C	A	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.1798	p.P600T	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	730	1	0.14	380	94	19.83	-	-	-	A	158152231	C	A	158152231	3	1	368	1	0	0	0	0	1	0	0	0	6266	507	18	4	1812	4	GALNT5	2	158152231	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09		158152231	85047142	11	39217										
LRP2	0	genome.wustl.edu	37	chr2	170011097	170011097	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cggacattgtcaggcagtagCaacaaaggagagctacctgt	12	9	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	170011097	170011097	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.12168	p.L4056F	0.997	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	149	0	0	103	30	22.56	-	-	-	G	170011097	C	G	170011097	3	3	368	1	0	0	0	0	1	0	0	0	9022	709	25	4	1855	4	LRP2	2	170011097	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	11858866	170011097	73188276	12	39218										
BMPR2	0	genome.wustl.edu	37	chr2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cagggatgacttcctcgctgCagcggccctggcgggtgccc	15	15	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	203242213	203242213	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	nonsense	c.16	p.Q6*	0.233	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	49	0	0	58	25	30.12	-	-	-	T	203242213	C	T	203242213	4	4	368	1	0	0	0	0	0	1	0	0	1476	711	25	4	18	4	BMPR2	2	203242213	Nonsense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	33231116	203242213	39957160	13	39219										
SPEG	0	genome.wustl.edu	37	chr2	220333886	220333886	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gtggtcttgcagctcgaagcTggagaagatgccatccattc	12	10	1	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	220333886	220333886	T	A	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.3500	p.L1167Q	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	13	0	0	23	12	34.29	-	-	-	A	220333886	T	A	220333886	3	1	368	1	0	0	0	0	1	0	0	0	15127	1580	55	5	3562	5	SPEG	2	220333886	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	17091673	220333886	22865487	14	39220										
ARMC9	0	genome.wustl.edu	37	chr2	232156119	232156119	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gaaggcaatgctgaaatgatCcgccagatagaattcatcat	9	8	2	4			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	232156119	232156119	C	T	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	1	known	silent	c.1680	p.I560	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	156	0	0	81	18	18.18	-	-	-	T	232156119	C	T	232156119	2	4	368	1	0	0	0	0	0	0	0	1	962	845	30	2		2	ARMC9	2	232156119	Silent	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	11822233	232156119	11043254	15	39221										
EPHA6	0	genome.wustl.edu	37	chr3	97356897	97356897	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gtctctccagagtgctggaaGatgatccagaagctgcttat	11	9	1	4			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97356897	97356897	G	T	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	1	known	missense	c.2755	p.D919Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	221	0	0	143	18	11.18	-	-	-	T	97356897	G	T	97356897	3	4	368	1	0	0	0	0	1	0	0	0	5208	942	33	2	2877	2	EPHA6	3	97356897	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		97356897	100665533	16	39222										
ARL6	0	genome.wustl.edu	37	chr3	97506865	97506865	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cgtcgaattccaatcttattCtttgcaaataaaatggatct	5	8	3	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97506865	97506865	C	A	SNP	ARL6	ENST00000335979	human	ensembl	69_37n	1	known	missense	c.381	p.F127L	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL6	HGNC	ENSG00000113966	365	0	0	98	19	16.24	-	-	-	A	97506865	C	A	97506865	3	1	368	1	0	0	0	0	1	0	0	0	945	912	32	2	399	2	ARL6	3	97506865	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	149968	97506865	100515565	17	39223										
CEP63	0	genome.wustl.edu	37	chr3	134268924	134268924	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gttgaaagaacagattttacAgggtgaacaaagttacagtt	10	4	0	4			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	134268924	134268924	A	G	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	missense	c.1202	p.Q401R	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	302	0	0	83	23	21.7	-	-	-	G	134268924	A	G	134268924	3	3	368	1	0	0	0	0	1	0	0	0	3286	188	7	5	1240	5	CEP63	3	134268924	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	36762059	134268924	63753506	18	39224										
PRR23B	0	genome.wustl.edu	37	chr3	138738845	138738845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tggggacaggctccagaaggCggaattccaggtcaaagatg	15	8	1	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	138738845	138738845	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	missense	c.659	p.R220H	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	49	0	0	76	23	23	-	-	-	T	138738845	C	T	138738845	3	4	368	1	0	0	0	0	1	0	0	0	12676	768	27	1	142	1	PRR23B	3	138738845	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	4469921	138738845	59283585	19	39225										
PLS1	0	genome.wustl.edu	37	chr3	142403210	142403210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	accaatgcaggatggcatacCatcagcaacttcagccaaga	8	12	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	142403210	142403210	C	T	SNP	PLS1	ENST00000337777	human	ensembl	69_37n	1	known	silent	c.861	p.T287	0.905	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS1	HGNC	ENSG00000120756	122	0	0	112	16	12.5	-	-	-	T	142403210	C	T	142403210	2	4	368	1	0	0	0	0	0	0	0	1	12181	581	21	4		4	PLS1	3	142403210	Silent	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	3664365	142403210	55619220	20	39226										
METTL14	0	genome.wustl.edu	37	chr4	119609080	119609080	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gattttgtcttttctcagttGggagctgaaagtgccgacag	12	7	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	4	119609080	119609080	G	C	SNP	METTL14	ENST00000388822	human	ensembl	69_37n	1	known	missense	c.69	p.L23F	1.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388	297	0	0	178	40	18.35	-	-	-	C	119609080	G	C	119609080	3	2	368	1	0	0	0	0	1	0	0	0	9569	1339	47	4	75	4	METTL14	4	119609080	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		119609080	71545196	21	39227										
PARP8	0	genome.wustl.edu	37	chr5	50055554	50055554	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	caataccagtaatttttcatAgaatagcaacaggtaatagt	6	6	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	5	50055554	50055554	A	T	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	nonsense	c.262	p.R88*	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	412	0	0	126	16	11.27	-	-	-	T	50055554	A	T	50055554	4	4	368	1	0	0	0	0	0	1	0	0	11538	412	15	5	276	5	PARP8	5	50055554	Nonsense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09		50055554	130859706	22	39228										
NEDD9	0	genome.wustl.edu	37	chr6	11190312	11190312	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcagtgccttgttgtgggccTgggccttgtggtcaccagga	16	10	1	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	11190312	11190312	T	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.1790	p.Q597L	0.133	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	37	0	0	63	18	22.22	-	-	-	A	11190312	T	A	11190312	3	1	368	1	0	0	0	0	1	0	0	0	10385	1580	55	5	726	5	NEDD9	6	11190312	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09		11190312	159924755	23	39229										
BTN3A1	0	genome.wustl.edu	37	chr6	26412970	26412970	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	atgaggctccactttgttaaAtaaattggatgtatggaaaa	9	4	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	26412970	26412970	A	G	SNP	BTN3A1	ENST00000476549	human	ensembl	69_37n	1	known	silent	c.1056	p.K352	0.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A1	HGNC	ENSG00000026950	452	0	0	211	30	12.45	-	-	-	G	26412970	A	G	26412970	2	3	368	1	0	0	0	0	0	0	0	1	1571	98	4	5		5	BTN3A1	6	26412970	Silent	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	15222658	26412970	144702097	24	39230										
LAMB4	0	genome.wustl.edu	37	chr7	107746436	107746436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcatccccaagggtgtggagCttggtaaagtttatcctcag	12	9	1	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	107746436	107746436	C	G	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.696	p.K232N	0.970	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	221	0	0	161	36	18.27	-	-	-	G	107746436	C	G	107746436	3	3	368	1	0	0	0	0	1	0	0	0	8667	796	28	4	4697	4	LAMB4	7	107746436	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09		107746436	51392227	25	39231										
SSPO	0	genome.wustl.edu	37	chr7	149500337	149500337	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgcgagctgggccgtgtgtaTgtgagtgccgatctgtgcca	16	9	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	149500337	149500337	T	G	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	22	0	0	51	9	15	-	-	-	G	149500337	T	G	149500337	1	3	368	0	1	0	0	0	0	0	0	0	15280	1471	51	5		5	SSPO	7	149500337	RNA	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	41753901	149500337	9638326	26	39232										
CSPP1	0	genome.wustl.edu	37	chr8	68024243	68024243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	acttattcagagaaggaaagAgaaatacagactagaactgt	9	5	1	4			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	68024243	68024243	A	G	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.1157	p.E386G	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	395	0	0	203	52	20.39	-	-	-	G	68024243	A	G	68024243	3	3	368	1	0	0	0	0	1	0	0	0	3994	304	11	5	1304	5	CSPP1	8	68024243	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09		68024243	78339779	27	39233										
NECAB1	0	genome.wustl.edu	37	chr8	91937819	91937819	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	atggcctggaaaacgatcaaGccgccgagtccagagacaca	11	12	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	91937819	91937819	G	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	missense	c.551	p.S184I	0.997	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	124	0	0	220	29	11.65	-	-	-	T	91937819	G	T	91937819	3	4	368	1	0	0	0	0	1	0	0	0	10376	971	34	4	577	4	NECAB1	8	91937819	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	23913576	91937819	54426203	28	39234										
RSPO2	0	genome.wustl.edu	37	chr8	109001415	109001415	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tctgttgacatcggctacacCcattgtcctttgaacaagac	7	12	1	3			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	109001415	109001415	C	A	SNP	RSPO2	ENST00000276659	human	ensembl	69_37n	-1	known	missense	c.152	p.G51V	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	superfamily_Growth_fac_rcpt,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO2	HGNC	ENSG00000147655	130	1	0.76	132	20	13.16	-	-	-	A	109001415	C	A	109001415	3	1	368	1	0	0	0	0	1	0	0	0	13796	623	22	4	595	4	RSPO2	8	109001415	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	17063596	109001415	37362607	29	39235										
ZNF169	0	genome.wustl.edu	37	chr9	97063282	97063282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cagacaccagaggacacacaCaggggagaagccttatctgt	11	11	1	3			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	9	97063282	97063282	C	A	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	1	known	missense	c.1442	p.T481K	0.687	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	70	0	0	85	14	14	-	-	-	A	97063282	C	A	97063282	3	1	368	1	0	0	0	0	1	0	0	0	17838	478	17	4	1456	4	ZNF169	9	97063282	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09		97063282	44150149	30	39236										
ITGA8	0	genome.wustl.edu	37	chr10	15573048	15573048	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tatatatttaaagatactcaCtactatgcttccttctggga	5	8	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	15573048	15573048	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	splice_site	c.2982+1	e28+1	0.996	-	-	-	no_errors	ITGA8	HGNC	ENSG00000077943	277	0	0	64	16	20	-	-	-	A	15573048	C	A	15573048	5	1	368	1	0	0	0	0	0	0	1	0	7936	579	20	4	220	4	ITGA8	10	15573048	Splice_Site	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09		15573048	119961699	31	39237										
ZNF37A	0	genome.wustl.edu	37	chr10	38407207	38407207	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cttactgtgcatcagaaaacAcacacaggggagaagcccta	9	11	1	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	38407207	38407207	A	G	SNP	ZNF37A	ENST00000351773	human	ensembl	69_37n	1	known	silent	c.1128	p.T376	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407	205	0	0	97	28	22.4	-	-	-	G	38407207	A	G	38407207	2	3	368	1	0	0	0	0	0	0	0	1	17968	146	6	5		5	ZNF37A	10	38407207	Silent	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	22834159	38407207	97127540	32	39238										
ACTR1A	0	genome.wustl.edu	37	chr10	104247996	104247996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	atccttgacgatgccatgctCcatgggatagcggattgaaa	11	9	0	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	104247996	104247996	C	T	SNP	ACTR1A	ENST00000369905	human	ensembl	69_37n	-1	known	missense	c.226	p.E76K	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1A	HGNC	ENSG00000138107	85	0	0	100	52	34.21	-	-	-	T	104247996	C	T	104247996	3	4	368	1	0	0	0	0	1	0	0	0	209	864	30	2	936	2	ACTR1A	10	104247996	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	65840789	104247996	31286751	33	39239										
MUC5B	0	genome.wustl.edu	37	chr11	1264014	1264014	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcaaccgcccttccagcactGagaagcacagccaccacacc	7	19	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	1264014	1264014	G	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.5913	p.L1971	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	261	0	0	599	145	19.49	-	-	-	C	1264014	G	C	1264014	2	2	368	1	0	0	0	0	0	0	0	1	10051	1277	45	2		2	MUC5B	11	1264014	Silent	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		1264014	133742502	34	39240										
OR4A5	0	genome.wustl.edu	37	chr11	51411671	51411671	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	caaaaaagaggacaacaacgGtactgccggagctgcaggta	12	9	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	51411671	51411671	G	C	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	missense	c.725	p.T242S	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	119	0	0	66	15	18.52	-	-	-	C	51411671	G	C	51411671	3	2	368	1	0	0	0	0	1	0	0	0	11116	1261	44	4	226	4	OR4A5	11	51411671	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	50147657	51411671	83594845	35	39241										
OR5L2	0	genome.wustl.edu	37	chr11	55594925	55594925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ttctgctactcctcaataatTgtgccaaagatgttggctaa	7	9	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	55594925	55594925	T	G	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.231	p.I77M	0.044	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	365	0	0	383	78	16.92	-	-	-	G	55594925	T	G	55594925	3	3	368	1	0	0	0	0	1	0	0	0	11244	1800	63	5	233	5	OR5L2	11	55594925	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	4183254	55594925	79411591	36	39242										
RTN4RL2	0	genome.wustl.edu	37	chr11	57235332	57235332	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tggctcttctccaacaacctCtccaccatctacccgggcac	5	19	4	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	57235332	57235332	C	T	SNP	RTN4RL2	ENST00000335099	human	ensembl	69_37n	1	known	silent	c.282	p.L94	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907	39	0	0	128	31	19.5	-	-	-	T	57235332	C	T	57235332	2	4	368	1	0	0	0	0	0	0	0	1	13818	900	32	2		2	RTN4RL2	11	57235332	Silent	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	1640407	57235332	77771184	37	39243										
PDE2A	0	genome.wustl.edu	37	chr11	72300269	72300269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cttgtcttccaccacctggcCcaggcatcctgtcaactagg	8	16	2	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	72300269	72300269	C	G	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	missense	c.889	p.G297R	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642	43	0	0	41	8	16.33	-	-	-	G	72300269	C	G	72300269	3	3	368	1	0	0	0	0	1	0	0	0	11709	623	22	4	2016	4	PDE2A	11	72300269	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	15064937	72300269	62706247	38	39244										
MAML2	0	genome.wustl.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	69	0	0	192	30	13.51	-	-	-	T	95825407	C	T	95825407	2	4	368	1	0	0	0	0	0	0	0	1	9277	796	28	4		4	MAML2	11	95825407	Silent	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	23525138	95825407	39181109	39	39245										
IGSF9B	0	genome.wustl.edu	37	chr11	133807856	133807856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tttctgtaaaggtgggagggGctgcaaaggagaccacaaag	15	6	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	133807856	133807856	G	T	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.410	p.A137D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	57	0	0	52	12	18.75	-	-	-	T	133807856	G	T	133807856	3	4	368	1	0	0	0	0	1	0	0	0	7660	1217	42	4	3703	4	IGSF9B	11	133807856	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	37982449	133807856	1198660	40	39246										
LRRIQ1	0	genome.wustl.edu	37	chr12	85449848	85449848	+	Missense_Mutation	SNP	T	T	A													0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gggtgatatagccaaaaatcTagtggatgaaaattcaaaga							TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	85449848	85449848	T	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.1277	p.L426Q	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	244	0	0	31	10	24.39	-	-	-	A	85449848	T	A	85449848	3	1	368	1	0	0	0	0	1	0	0	0	9095	1522	53	5	1303	5	LRRIQ1	12	85449848	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09		85449848	48402047	41	39247	325	2								
LRRIQ1	0	genome.wustl.edu	37	chr12	85449849	85449849	+	Silent	SNP	A	A	G													0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ggtgatatagccaaaaatctAgtggatgaaaattcaaagaa							TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	85449849	85449849	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	silent	c.1278	p.L426	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	244	0	0	32	10	23.81	-	-	-	G	85449849	A	G	85449849	2	3	368	1	0	0	0	0	0	0	0	1	9095	407	15	5		5	LRRIQ1	12	85449849	Silent	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	1	85449849	48402046	42	39248	325	2								
SELPLG	0	genome.wustl.edu	37	chr12	109017672	109017674	+	In_Frame_Del	DEL	GCA	GCA	-													0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	agtggtctgtgcctccgtggGcactggttgagtggtctgtg							TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	109017672	109017674	GCA	-	DEL	SELPLG	ENST00000550948	human	ensembl	69_37n	-1	known	in_frame_del	c.412_410	p.VP137in_frame_delA	0.000:0.000:0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876	66	0	0	213	50	12.2	-	-	-	-	109017674	GCA	-	109017672	7	5	368	1	0	1	0	1	0	0	0	0	14108	1218	42	0		0	SELPLG	12	109017672	In_Frame_Del	DEL	GCA	TCGA-AR-A0U1-01A-11D-A10Y-09	23567823	109017672	24834223	43	39249										
AACS	0	genome.wustl.edu	37	chr12	125576043	125576043	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcattggtgccatctggagcTccacgtccccggacttcggt	12	14	1	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	125576043	125576043	T	A	SNP	AACS	ENST00000316519	human	ensembl	69_37n	1	known	missense	c.544	p.S182T	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	71	0	0	91	12	11.65	-	-	-	A	125576043	T	A	125576043	3	1	368	1	0	0	0	0	1	0	0	0	9	1551	54	5	562	5	AACS	12	125576043	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	16558371	125576043	8275852	44	39250										
RIMBP2	0	genome.wustl.edu	37	chr12	130927134	130927134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ccccagcgtgcttgccaaccGcgactcgttgtcctgcacaa	9	17	0	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	130927134	130927134	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.712	p.R238W	0.780	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	66	0	0	93	27	22.5	-	-	-	A	130927134	G	A	130927134	3	1	368	1	0	0	0	0	1	0	0	0	13447	1086	38	1	2494	1	RIMBP2	12	130927134	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	5351091	130927134	2924761	45	39251										
SPG20	0	genome.wustl.edu	37	chr13	36886528	36886528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	atctttgtcttttttaagagAttctggaacaagtttgcttc	7	6	3	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	36886528	36886528	A	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.1570	p.S524P	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	416	0	0	102	39	27.66	-	-	-	G	36886528	A	G	36886528	3	3	368	1	0	0	0	0	1	0	0	0	15133	333	12	5	442	5	SPG20	13	36886528	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09		36886528	78283350	46	39252										
OXGR1	0	genome.wustl.edu	37	chr13	97639673	97639673	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgctgctatacaggttgaaaTggaagctgaagcggataaac	12	6	0	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	97639673	97639673	T	C	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	missense	c.341	p.H114R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	77	0	0	112	33	22.76	-	-	-	C	97639673	T	C	97639673	3	2	368	1	0	0	0	0	1	0	0	0	11405	1464	51	5	676	5	OXGR1	13	97639673	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	60753145	97639673	17530205	47	39253										
CARS2	0	genome.wustl.edu	37	chr13	111319757	111319759	+	In_Frame_Del	DEL	ATG	ATG	-													0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cactgtgcaatttcgttttcAtgatgtggaaaagctaaatc							TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	111319757	111319759	ATG	-	DEL	CARS2	ENST00000257347	human	ensembl	69_37n	-1	known	in_frame_del	c.849_847	p.H283in_frame_del	0.835:1.000:1.000	pfam_Cys-tRNA/MSH_ligase,pfam_aa-tRNA-synth_Ia,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS2	HGNC	ENSG00000134905	304	0	0	91	11	10.58	-	-	-	-	111319759	ATG	-	111319757	7	5	368	1	0	1	0	1	0	0	0	0	2683	214	8	0	877	0	CARS2	13	111319757	In_Frame_Del	DEL	ATG	TCGA-AR-A0U1-01A-11D-A10Y-09	13680084	111319757	3850121	48	39254										
SYT17	0	genome.wustl.edu	37	chr16	19278387	19278387	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcgtgtctcctgcctccctgGaggtgacctgagggctgcag	15	13	1	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	19278387	19278387	G	T	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	nonsense	c.1414	p.E472*	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	15	0	0	43	8	15.69	-	-	-	T	19278387	G	T	19278387	4	4	368	1	0	0	0	0	0	1	0	0	15565	1175	41	2	1444	2	SYT17	16	19278387	Nonsense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		19278387	71076366	49	39255										
ARHGAP17	0	genome.wustl.edu	37	chr16	24979688	24979688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ttacctggctctgactgaatCccagtctaacaccaatcttg	6	13	3	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	24979688	24979688	C	G	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.445	p.D149H	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	174	0	0	125	28	18.18	-	-	-	G	24979688	C	G	24979688	3	3	368	1	0	0	0	0	1	0	0	0	869	855	30	2	2260	2	ARHGAP17	16	24979688	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	5701301	24979688	65375065	50	39256										
ITGAX	0	genome.wustl.edu	37	chr16	31373963	31373963	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gagctggccctctggaaaggGgtgcagagcctggtcctggg	18	10	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31373963	31373963	G	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.1248	p.G416	0.154	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	27	0	0	45	19	29.69	-	-	-	T	31373963	G	T	31373963	2	4	368	1	0	0	0	0	0	0	0	1	7943	1219	43	4		4	ITGAX	16	31373963	Silent	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	6394275	31373963	58980790	51	39257										
ITGAD	0	genome.wustl.edu	37	chr16	31425771	31425771	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gcactctcccctgcacttcaGgtgacatccaaagctctgtc	7	16	3	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31425771	31425771	G	C	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	1	known	splice_site	c.1997-1	e17-1	0.961	-	-	-	no_errors	ITGAD	HGNC	ENSG00000156886	181	0	0	130	35	21.21	-	-	-	C	31425771	G	C	31425771	5	2	368	1	0	0	0	0	0	0	1	0	7938	1014	35	4	2062	4	ITGAD	16	31425771	Splice_Site	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	51808	31425771	58928982	52	39258										
PHKB	0	genome.wustl.edu	37	chr16	47531346	47531346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tcttaaaagcattaatcttcCaagacctgataatgaaactc	4	9	2	3			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	47531346	47531346	C	T	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	1	known	missense	c.113	p.P38L	0.992	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	403	0	0	96	32	25	-	-	-	T	47531346	C	T	47531346	3	4	368	1	0	0	0	0	1	0	0	0	11919	594	21	4	178	4	PHKB	16	47531346	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	16105575	47531346	42823407	53	39259										
CNGB1	0	genome.wustl.edu	37	chr16	57965655	57965655	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gctgagcttgggactataagGgtgtctgatttggcaggaga	16	5	1	3			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	57965655	57965655	G	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.1500	p.T500	0.998	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	140	0	0	172	37	17.7	-	-	-	T	57965655	G	T	57965655	2	4	368	1	0	0	0	0	0	0	0	1	3630	1219	43	4		4	CNGB1	16	57965655	Silent	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	10434309	57965655	32389098	54	39260										
NUP88	0	genome.wustl.edu	37	chr17	5289552	5289552	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gtttacatgattgcggatatCattgatttgcttcaccattt	7	7	2	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	5289552	5289552	C	G	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.2200	p.D734H	1.000	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	537	0	0	270	78	22.41	-	-	-	G	5289552	C	G	5289552	3	3	368	1	0	0	0	0	1	0	0	0	10844	826	29	2	29	2	NUP88	17	5289552	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09		5289552	75905658	55	39261										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	179	1	0.56	104	52	33.33	-	-	-	C	7578190	T	C	7578190	3	2	368	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	2288638	7578190	73617020	56	39262										
CCDC144B	0	genome.wustl.edu	37	chr17	18528551	18528551	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cggacgtcgtgctggggctgGtctaaggcgccctcaccgtg	16	13	2	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	18528551	18528551	G	A	SNP	CCDC144B	ENST00000450277	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	CCDC144B	HGNC	ENSG00000154874	27	0	0	33	16	32.65	-	-	-	A	18528551	G	A	18528551	1	1	368	0	1	0	0	0	0	0	0	0	2803	1252	44	4		4	CCDC144B	17	18528551	RNA	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09	10950361	18528551	62666659	57	39263										
TMUB2	0	genome.wustl.edu	37	chr17	42265092	42265092	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	cttcgatgatttcacgtcatCttcaaaacaacctcatgagg	6	11	5	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	42265092	42265092	C	G	SNP	TMUB2	ENST00000538716	human	ensembl	69_37n	1	known	missense	c.16	p.L6V	0.999	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	TMUB2	HGNC	ENSG00000168591	455	0	0	142	59	29.21	-	-	-	G	42265092	C	G	42265092	3	3	368	1	0	0	0	0	1	0	0	0	16360	913	32	2	18	2	TMUB2	17	42265092	Missense_Mutation	SNP	C	TCGA-AR-A0U1-01A-11D-A10Y-09	23736541	42265092	38930118	58	39264										
DHPS	0	genome.wustl.edu	37	chr19	12788192	12788192	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gccgtctgtaagtgcgggacTaaacacagggatgtggttct	14	8	2	0			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	12788192	12788192	T	G	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	missense	c.697	p.S233R	1.000	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	50	0	0	81	18	18.18	-	-	-	G	12788192	T	G	12788192	3	3	368	1	0	0	0	0	1	0	0	0	4521	1522	53	5	428	5	DHPS	19	12788192	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09		12788192	46340791	59	39265										
ARHGEF1	0	genome.wustl.edu	37	chr19	42410774	42410774	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	gaccatgaagcagctggaggTggggcgggacgggccagggg	22	8	0	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	42410774	42410774	T	C	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	1	known	splice_site	c.2700+2	e27+2	0.991	-	-	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	18	0	0	17	6	25	-	-	-	C	42410774	T	C	42410774	5	2	368	1	0	0	0	0	0	0	1	0	895	1710	59	5	2808	5	ARHGEF1	19	42410774	Splice_Site	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09	29622582	42410774	16718209	60	39266										
LILRA5	0	genome.wustl.edu	37	chr19	54822884	54822884	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	ctccttcctcagtcagaatgAacctgtcgaatctcagccgt	7	14	3	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	54822884	54822884	A	G	SNP	LILRA5	ENST00000301219	human	ensembl	69_37n	-1	known	missense	c.512	p.F171S	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116	55	0	0	78	13	14.29	-	-	-	G	54822884	A	G	54822884	3	3	368	1	0	0	0	0	1	0	0	0	8843	246	9	5	485	5	LILRA5	19	54822884	Missense_Mutation	SNP	A	TCGA-AR-A0U1-01A-11D-A10Y-09	12412110	54822884	4306099	61	39267										
PTGIS	0	genome.wustl.edu	37	chr20	48124493	48124493	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tagcggacgggcacgtcgtgTtccggctgcatcagaccgaa	14	12	1	1			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	20	48124493	48124493	T	A	SNP	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	missense	c.1467	p.E489D	0.056	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	10	0	0	44	12	21.43	-	-	-	A	48124493	T	A	48124493	3	1	368	1	0	0	0	0	1	0	0	0	12833	1722	60	5	39	5	PTGIS	20	48124493	Missense_Mutation	SNP	T	TCGA-AR-A0U1-01A-11D-A10Y-09		48124493	14901027	62	39268										
DDX26B	0	genome.wustl.edu	37	chrX	134713802	134713802	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0806451612903226	5	0.563863862959083	1.45882352941176	2.08403361344538	0.663101604278075	0.265734265734266	0.921589049248625	0	tgtcaaaatctgctccatcaGagcttataaatatgacagga	7	8	3	2			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	X	134713802	134713802	G	C	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.2098	p.E700Q	0.008	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	157	0	0	76	20	20.83	-	-	-	C	134713802	G	C	134713802	3	2	368	1	0	0	0	0	1	0	0	0	4384	943	33	2	2156	2	DDX26B	23	134713802	Missense_Mutation	SNP	G	TCGA-AR-A0U1-01A-11D-A10Y-09		134713802	20556758	63	39269										
C1orf173	0	genome.wustl.edu	37	chr1	75038828	75038829	+	Frame_Shift_Ins	INS	-	-	C													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gcttgtcctatggggtctgaINSccccccttcacccagccttc							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	75038828	75038829	-	C	INS	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2566_2565	p.S855fs	0.000:0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	162	0	0	36	12	25	-	-	-	C	75038829	-	C	75038828	7	5	369	1	0	1	1	0	0	0	0	0	2033	275	10	0	2030	0	C1orf173	1	75038828	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09		75038828	174211793	1	39270										
MTF2	0	genome.wustl.edu	37	chr1	93599279	93599280	+	Frame_Shift_Ins	INS	-	-	A													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ggaagtaagcaatggcatagINSaaaaaaaaggaaagaaaaaa							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	93599279	93599280	-	A	INS	MTF2	ENST00000370298	human	ensembl	69_37n	1	known	frame_shift_ins	c.1180_1181	p.G397fs	1.000:0.994	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	99	0	0	45	21	31.82	-	-	-	A	93599280	-	A	93599279	7	5	369	1	0	1	1	0	0	0	0	0	9995	943	33	0	1226	0	MTF2	1	93599279	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	18560451	93599279	155651342	2	39271										
PRMT6	0	genome.wustl.edu	37	chr1	107600277	107600277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tgtccacctcgccttttcacCcggccactcactggaaacag	7	17	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	107600277	107600277	C	T	SNP	PRMT6	ENST00000370078	human	ensembl	69_37n	1	known	missense	c.940	p.P314S	0.870	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_mo5U34_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT6	HGNC	ENSG00000198890	33	0	0	9	5	35.71	-	-	-	T	107600277	C	T	107600277	3	4	369	1	0	0	0	0	1	0	0	0	12621	623	22	4	942	4	PRMT6	1	107600277	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	14000998	107600277	141650344	3	39272										
ZNF687	0	genome.wustl.edu	37	chr1	151261890	151261890	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gccatgtgcgacacagtcttCactcacaaacccctcctctc	5	18	4	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	151261890	151261890	C	A	SNP	ZNF687	ENST00000426871	human	ensembl	69_37n	1	known	nonsense	c.1316	p.S439*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF687	HGNC	ENSG00000143373	68	0	0	36	10	21.74	-	-	-	A	151261890	C	A	151261890	4	1	369	1	0	0	0	0	0	1	0	0	18188	825	29	2	2522	2	ZNF687	1	151261890	Nonsense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	43661613	151261890	97988731	4	39273										
PI4KB	0	genome.wustl.edu	37	chr1	151265399	151265399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gatagaccgcatactgccatCcaccatctgctccaccagca	6	17	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	151265399	151265399	C	T	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	missense	c.2416	p.D806N	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	86	0	0	79	20	20.2	-	-	-	T	151265399	C	T	151265399	3	4	369	1	0	0	0	0	1	0	0	0	11948	855	30	2	74	2	PI4KB	1	151265399	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	3509	151265399	97985222	5	39274										
ZNF678	0	genome.wustl.edu	37	chr1	227751396	227751396	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ctgggagttacatagctaagAtgccaggacaccccgaaagc	11	11	0	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	1	227751396	227751396	A	T	SNP	ZNF678	ENST00000397097	human	ensembl	69_37n	1	known	missense	c.1	p.M1L	0.011	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450	32	0	0	21	12	36.36	-	-	-	T	227751396	A	T	227751396	3	4	369	1	0	0	0	0	1	0	0	0	18181	333	12	5	3	5	ZNF678	1	227751396	Missense_Mutation	SNP	A	TCGA-AR-A0U2-01A-11D-A10G-09	76485997	227751396	21499225	6	39275										
THSD7B	0	genome.wustl.edu	37	chr2	138169282	138169282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	atatcccaaccttatggaaaCtggtcagattgcattcttcc	6	11	2	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	2	138169282	138169282	C	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.2799	p.N933K	0.991	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	87	0	0	33	32	49.23	-	-	-	A	138169282	C	A	138169282	3	1	369	1	0	0	0	0	1	0	0	0	15975	564	20	4	2756	4	THSD7B	2	138169282	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		138169282	105030091	7	39276										
TTN	0	genome.wustl.edu	37	chr2	179595258	179595259	+	Frame_Shift_Ins	INS	-	-	A													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tgtcagatgcccactgcattINSggttgtgccctgccttattt							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	2	179595258	179595259	-	A	INS	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_ins	c.14270_14269	p.Q4757fs	1.000:1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	72	0	0	14	2	12.5	-	-	-	A	179595259	-	A	179595258	7	5	369	1	0	1	1	0	0	0	0	0	16832	1812	63	0	86735	0	TTN	2	179595258	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	41425976	179595258	63604115	8	39277										
WDR75	0	genome.wustl.edu	37	chr2	190332305	190332305	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	agcagttagttttgaggaaaTagtcacaatatgggattctg	11	4	2	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	2	190332305	190332305	T	C	SNP	WDR75	ENST00000314761	human	ensembl	69_37n	1	known	missense	c.1559	p.I520T	0.995	smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR75	HGNC	ENSG00000115368	141	0	0	24	45	65.22	-	-	-	C	190332305	T	C	190332305	3	2	369	1	0	0	0	0	1	0	0	0	17422	1406	49	5	1613	5	WDR75	2	190332305	Missense_Mutation	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09	10737047	190332305	52867068	9	39278										
FYCO1	0	genome.wustl.edu	37	chr3	46010138	46010138	+	Frame_Shift_Del	DEL	C	C	-													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tcgcatctcatcaaagccctCcaatgcctcgttgtttaggg							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	3	46010138	46010138	C	-	DEL	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	frame_shift_del	c.688	p.E230fs	1.000	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	49	0	0	7	2	22.22	-	-	-	-	46010138	C	-	46010138	7	5	369	1	0	1	0	1	0	0	0	0	6174	864	30	0	3792	0	FYCO1	3	46010138	Frame_Shift_Del	DEL	C	TCGA-AR-A0U2-01A-11D-A10G-09		46010138	152012292	10	39279										
SENP7	0	genome.wustl.edu	37	chr3	101136588	101136588	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tagggtctttctgaattttcGtcctaaatccgtccatagga	8	9	2	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	3	101136588	101136588	G	C	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	missense	c.331	p.R111G	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	103	0	0	38	22	36.07	-	-	-	C	101136588	G	C	101136588	3	2	369	1	0	0	0	0	1	0	0	0	14139	1153	40	3	2901	3	SENP7	3	101136588	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	55126450	101136588	96885842	11	39280										
PLXNA1	0	genome.wustl.edu	37	chr3	126739137	126739137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	actaccggacatatgccatgCgggtgctctttcctgggatc	11	12	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	3	126739137	126739137	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.3988	p.R1330W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	35	0	0	10	11	52.38	-	-	-	T	126739137	C	T	126739137	3	4	369	1	0	0	0	0	1	0	0	0	12193	759	27	1	4066	1	PLXNA1	3	126739137	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	25602549	126739137	71283293	12	39281										
ZBTB38	0	genome.wustl.edu	37	chr3	141163018	141163018	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cgagaaaacagtcaaatgaaTgagtctgcacctggtaccta	9	9	2	3			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	3	141163018	141163018	T	C	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	silent	c.1791	p.N597	0.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	55	0	0	21	4	16	-	-	-	C	141163018	T	C	141163018	2	2	369	1	0	0	0	0	0	0	0	1	17635	1461	51	5		5	ZBTB38	3	141163018	Silent	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09	14423881	141163018	56859412	13	39282										
GPR125	0	genome.wustl.edu	37	chr4	22438157	22438157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	agccacctctatcacatctgCgccaagcttttctctcatcc	4	17	5	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	4	22438157	22438157	C	T	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.1193	p.R398H	1.000	pfam_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	154	0	0	28	9	24.32	-	-	-	T	22438157	C	T	22438157	3	4	369	1	0	0	0	0	1	0	0	0	6689	768	27	1	2816	1	GPR125	4	22438157	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		22438157	168716119	14	39283										
HTN3	0	genome.wustl.edu	37	chr4	70898889	70898889	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tttgtgtgtatgcaggaaaaGcatcattcacatcgaggcta	10	7	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	4	70898889	70898889	G	A	SNP	HTN3	ENST00000526767	human	ensembl	69_37n	1	known	silent	c.108	p.K36	0.000	NULL	NULL	-	no_errors	HTN3	HGNC	ENSG00000205649	154	0	0	94	31	24.8	-	-	-	A	70898889	G	A	70898889	2	1	369	1	0	0	0	0	0	0	0	1	7489	962	34	4		4	HTN3	4	70898889	Silent	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	48460732	70898889	120255387	15	39284										
GPR98	0	genome.wustl.edu	37	chr5	90079837	90079838	+	Frame_Shift_Ins	INS	-	-	A													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	acaatgattttatcactggtINSgctggagcggactggaggac							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	5	90079837	90079838	-	A	INS	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	frame_shift_ins	c.13616_13617	p.L4540fs	1.000:0.919	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	45	0	0	14	2	12.5	-	-	-	A	90079838	-	A	90079837	7	5	369	1	0	1	1	0	0	0	0	0	6772	1696	59	0	13882	0	GPR98	5	90079837	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09		90079837	90835423	16	39285										
GRXCR2	0	genome.wustl.edu	37	chr5	145252330	145252330	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ctggggcctggggacttcccCagacccataaacaccatcca	9	16	0	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	5	145252330	145252330	C	T	SNP	GRXCR2	ENST00000377976	human	ensembl	69_37n	-1	known	missense	c.202	p.G68R	1.000	NULL	NULL	-	no_errors	GRXCR2	HGNC	ENSG00000204928	83	0	0	23	11	32.35	-	-	-	T	145252330	C	T	145252330	3	4	369	1	0	0	0	0	1	0	0	0	6864	594	21	4	556	4	GRXCR2	5	145252330	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	55172493	145252330	35662930	17	39286										
DOPEY1	0	genome.wustl.edu	37	chr6	83872606	83872606	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	aatttaaaccttacgtggtaCgactagcaaaacttcttcgg	7	9	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	6	83872606	83872606	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	nonsense	c.7060	p.R2354*	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	157	0	0	58	26	30.95	-	-	-	T	83872606	C	T	83872606	4	4	369	1	0	0	0	0	0	1	0	0	4742	528	19	1	7202	1	DOPEY1	6	83872606	Nonsense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		83872606	87242461	18	39287										
OSBPL3	0	genome.wustl.edu	37	chr7	24902870	24902870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gctctggaccgccacctcctGtgcgatcttttttccttttt	7	14	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	24902870	24902870	G	T	SNP	OSBPL3	ENST00000313367	human	ensembl	69_37n	-1	known	missense	c.819	p.H273Q	0.993	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	71	0	0	82	12	12.77	-	-	-	T	24902870	G	T	24902870	3	4	369	1	0	0	0	0	1	0	0	0	11352	1368	48	4	1904	4	OSBPL3	7	24902870	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09		24902870	134235793	19	39288										
AEBP1	0	genome.wustl.edu	37	chr7	44151594	44151594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cagcctggtgcaggacacacGcatccacctggtgccctcac	10	17	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	44151594	44151594	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.1982	p.R661H	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	39	0	0	29	8	21.05	-	-	-	A	44151594	G	A	44151594	3	1	369	1	0	0	0	0	1	0	0	0	349	1087	38	1	2044	1	AEBP1	7	44151594	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	19248724	44151594	114987069	20	39289										
PPP1R3A	0	genome.wustl.edu	37	chr7	113520082	113520082	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tggatttgcttcttctctaaCccctctgctttatttggaaa	6	10	3	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	113520082	113520082	C	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	silent	c.1065	p.G355	0.009	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	183	0	0	51	13	20	-	-	-	A	113520082	C	A	113520082	2	1	369	1	0	0	0	0	0	0	0	1	12448	494	18	4		4	PPP1R3A	7	113520082	Silent	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	69368488	113520082	45618581	21	39290										
IMPDH1	0	genome.wustl.edu	37	chr7	128041163	128041163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tcttccgggtcagggctgagGtcaggtcctgaggatggagg	18	8	3	2			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	128041163	128041163	G	T	SNP	IMPDH1	ENST00000338791	human	ensembl	69_37n	-1	known	missense	c.410	p.T137N	1.000	pfam_IMP_DH_GMPRt,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_Cysta_beta_synth_core,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348	41	0	0	12	9	42.86	-	-	-	T	128041163	G	T	128041163	3	4	369	1	0	0	0	0	1	0	0	0	7780	1261	44	4	1437	4	IMPDH1	7	128041163	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	14521081	128041163	31097500	22	39291										
KIAA1549	0	genome.wustl.edu	37	chr7	138602615	138602615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tataaggcgtaaaaacactcGggtctctgacggcaagcgac	11	10	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	138602615	138602615	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.1757	p.P586L	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	59	0	0	37	12	24.49	-	-	-	A	138602615	G	A	138602615	3	1	369	1	0	0	0	0	1	0	0	0	8296	1116	39	1	4171	1	KIAA1549	7	138602615	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	10561452	138602615	20536048	23	39292										
HIPK2	0	genome.wustl.edu	37	chr7	139297952	139297952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	aaggagaaagaattacctggGcaagcagacctggttggatc	13	7	0	3			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	139297952	139297952	G	C	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.2108	p.A703G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	77	0	0	13	14	50	-	-	-	C	139297952	G	C	139297952	3	2	369	1	0	0	0	0	1	0	0	0	7168	1203	42	4	1516	4	HIPK2	7	139297952	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	695337	139297952	19840711	24	39293										
MLL3	0	genome.wustl.edu	37	chr7	151877956	151877957	+	Frame_Shift_Ins	INS	-	-	AA													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tgcacagaagctcccctctgINSatccaggccttggctgatca							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	151877956	151877957	-	AA	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6989_6988	p.S2330fs	0.132:0.026	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	85	0	0	17	2	10.53	-	-	-	AA	151877957	-	AA	151877956	7	5	369	1	0	1	1	0	0	0	0	0	9693	1294	45	0	7842	0	MLL3	7	151877956	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	12580004	151877956	7260707	25	39294	326	2								
MLL3	0	genome.wustl.edu	37	chr7	151877960	151877961	+	Frame_Shift_Ins	INS	-	-	T													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cagaagctcccctctgatccINSaggccttggctgatcagcaa							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	7	151877960	151877961	-	T	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6985_6984	p.G2328fs	0.997:0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	84	0	0	17	2	10.53	-	-	-	T	151877961	-	T	151877960	7	5	369	1	0	1	1	0	0	0	0	0	9693	603	21	0	7846	0	MLL3	7	151877960	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	4	151877960	7260703	26	39295	326	2								
MPDZ	0	genome.wustl.edu	37	chr9	13219576	13219577	+	Frame_Shift_Ins	INS	-	-	T													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cccgcaactctggtgttgaaINSgttggggatgaggagagggt							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	9	13219576	13219577	-	T	INS	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1068_1067	p.S357fs	0.001:0.024	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	119	0	0	22	3	12	-	-	-	T	13219577	-	T	13219576	7	5	369	1	0	1	1	0	0	0	0	0	9794	59	3	0	5213	0	MPDZ	9	13219576	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09		13219576	127993855	27	39296	327	2								
MPDZ	0	genome.wustl.edu	37	chr9	13219578	13219579	+	Frame_Shift_Ins	INS	-	-	G													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cgcaactctggtgttgaagtINStggggatgaggagagggtga							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	9	13219578	13219579	-	G	INS	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1066_1065	p.T355fs	0.000:0.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	123	0	0	22	3	12	-	-	-	G	13219579	-	G	13219578	7	5	369	1	0	1	1	0	0	0	0	0	9794	1725	60	0	5215	0	MPDZ	9	13219578	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	2	13219578	127993853	28	39297	327	2								
ZFP37	0	genome.wustl.edu	37	chr9	115806423	115806423	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tttatgcaaattatttttttTccccagtgaaccacagtcac	4	10	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	9	115806423	115806423	T	C	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.520	p.K174E	0.073	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	62	0	0	52	15	22.06	-	-	-	C	115806423	T	C	115806423	3	2	369	1	0	0	0	0	1	0	0	0	17744	1792	62	5	1421	5	ZFP37	9	115806423	Missense_Mutation	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09	102586845	115806423	25407008	29	39298										
C5	0	genome.wustl.edu	37	chr9	123778623	123778623	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ttgttgaggccaccacctgcCccacagcccagatcactctt	7	17	2	2			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	9	123778623	123778623	C	T	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	silent	c.1905	p.G635	0.993	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	83	0	0	41	19	31.67	-	-	-	T	123778623	C	T	123778623	2	4	369	1	0	0	0	0	0	0	0	1	2301	610	22	4		4	C5	9	123778623	Silent	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	7972200	123778623	17434808	30	39299										
PFKP	0	genome.wustl.edu	37	chr10	3159021	3159021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tggaccggccaaggaggctcCattcttgggacaaaacggta	13	10	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	10	3159021	3159021	C	T	SNP	PFKP	ENST00000413079	human	ensembl	69_37n	1	known	missense	c.115	p.H39Y	0.994	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,prints_Phosphofructokinase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PFKP	HGNC	ENSG00000067057	111	0	0	125	34	21.25	-	-	-	T	3159021	C	T	3159021	3	4	369	1	0	0	0	0	1	0	0	0	11840	581	21	4	1479	4	PFKP	10	3159021	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		3159021	132375726	31	39300										
GATA3	0	genome.wustl.edu	37	chr10	8115746	8115746	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	aaggaaggcatccagaccagAaaccgaaaaatgtctagcaa	9	9	1	2			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	10	8115746	8115746	A	T	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.1095	p.R365S	1.000	pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	71	0	0	63	18	22.22	-	-	-	T	8115746	A	T	8115746	3	4	369	1	0	0	0	0	1	0	0	0	6305	243	9	5	1113	5	GATA3	10	8115746	Missense_Mutation	SNP	A	TCGA-AR-A0U2-01A-11D-A10G-09	4956725	8115746	127419001	32	39301										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	63	0	0	51	25	32.89	-	-	-	G	8115875	-	G	8115874	7	5	369	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-AR-A0U2-01A-11D-A10G-09	128	8115874	127418873	33	39302										
CSTF2T	0	genome.wustl.edu	37	chr10	53458363	53458363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	caccaggagtcacgggtccgCgaggtataggagctctagga	15	10	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	10	53458363	53458363	C	T	SNP	CSTF2T	ENST00000331173	human	ensembl	69_37n	-1	known	missense	c.947	p.R316H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	32	0	0	8	7	46.67	-	-	-	T	53458363	C	T	53458363	3	4	369	1	0	0	0	0	1	0	0	0	4017	768	27	1	907	1	CSTF2T	10	53458363	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	45342489	53458363	82076384	34	39303										
OLFML1	0	genome.wustl.edu	37	chr11	7530894	7530894	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	aaaggttttctattttttcaTaaccaagcaacttctaatga	4	7	3	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	11	7530894	7530894	T	C	SNP	OLFML1	ENST00000329293	human	ensembl	69_37n	1	known	silent	c.684	p.H228	0.339	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML1	HGNC	ENSG00000183801	82	0	0	39	15	27.78	-	-	-	C	7530894	T	C	7530894	2	2	369	1	0	0	0	0	0	0	0	1	10929	1403	49	5		5	OLFML1	11	7530894	Silent	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09		7530894	127475622	35	39304										
FAT3	0	genome.wustl.edu	37	chr11	92087880	92087880	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gttctaatggtgaagtgactTactcagtcttgacagataca	9	7	3	4			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	11	92087880	92087880	T	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.2602	p.Y868N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	82	0	0	23	6	20.69	-	-	-	A	92087880	T	A	92087880	3	1	369	1	0	0	0	0	1	0	0	0	5737	1754	61	5	2604	5	FAT3	11	92087880	Missense_Mutation	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09	84556986	92087880	42918636	36	39305										
KDM5A	0	genome.wustl.edu	37	chr12	465641	465641	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gccaagcccacaaccttgggCccagccccaaaaatctgaag	8	16	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	12	465641	465641	C	T	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	silent	c.735	p.G245	0.935	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	200	1	0.5	82	33	28.7	-	-	-	T	465641	C	T	465641	2	4	369	1	0	0	0	0	0	0	0	1	8186	726	26	4		4	KDM5A	12	465641	Silent	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		465641	133386254	37	39306										
CD163L1	0	genome.wustl.edu	37	chr12	7556322	7556322	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gacatcctagctgcttacaaAccacaagggcttgttcattc	7	12	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	12	7556322	7556322	A	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.1217	p.V406G	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	90	0	0	28	10	26.32	-	-	-	C	7556322	A	C	7556322	3	2	369	1	0	0	0	0	1	0	0	0	2997	43	2	5	3200	5	CD163L1	12	7556322	Missense_Mutation	SNP	A	TCGA-AR-A0U2-01A-11D-A10G-09	7090681	7556322	126295573	38	39307										
PPP2R5C	0	genome.wustl.edu	37	chr14	102384167	102384167	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	actccacgctttgcattgcaGtacacagtgtatagtcaagc	8	11	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	14	102384167	102384167	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	69_37n	1	known	splice_site	c.1420-1	e15-1	1.000	-	-	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	75	0	0	46	15	24.19	-	-	-	A	102384167	G	A	102384167	5	1	369	1	0	0	0	0	0	0	1	0	12471	1043	36	4	1769	4	PPP2R5C	14	102384167	Splice_Site	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09		102384167	4965373	39	39308										
GABRA5	0	genome.wustl.edu	37	chr15	27114436	27114436	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tggttttatcatgatcaaaaAcctccttctcttttgtattt	4	8	3	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	15	27114436	27114436	A	T	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	missense	c.41	p.N14I	1.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	173	0	0	252	182	41.94	-	-	-	T	27114436	A	T	27114436	3	4	369	1	0	0	0	0	1	0	0	0	6213	43	2	5	43	5	GABRA5	15	27114436	Missense_Mutation	SNP	A	TCGA-AR-A0U2-01A-11D-A10G-09		27114436	75416956	40	39309										
FSD2	0	genome.wustl.edu	37	chr15	83451757	83451759	+	In_Frame_Del	DEL	TTC	TTC	-													0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	taatgtgactcaaagttttgTtcttgttttccaaaattctc							TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	15	83451757	83451759	TTC	-	DEL	FSD2	ENST00000334574	human	ensembl	69_37n	-1	known	in_frame_del	c.756_754	p.E252in_frame_del	1.000:1.000:1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD2	HGNC	ENSG00000186628	115	0	0	164	26	13.54	-	-	-	-	83451759	TTC	-	83451757	7	5	369	1	0	1	0	1	0	0	0	0	6120	1722	60	0	1533	0	FSD2	15	83451757	In_Frame_Del	DEL	TTC	TCGA-AR-A0U2-01A-11D-A10G-09	56337321	83451757	19079635	41	39310										
WDR24	0	genome.wustl.edu	37	chr16	737628	737628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ctgtgaacatcctctcgcacCggtcgggacgccggatgtcc	12	15	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	16	737628	737628	C	T	SNP	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	missense	c.983	p.R328Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	32	0	0	9	5	35.71	-	-	-	T	737628	C	T	737628	3	4	369	1	0	0	0	0	1	0	0	0	17378	652	23	1	1811	1	WDR24	16	737628	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		737628	89617125	42	39311										
CNTNAP4	0	genome.wustl.edu	37	chr16	76501400	76501400	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ttcagtgaccttcagatagaCtcatgtggcatctcagacag	9	10	4	4			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	16	76501400	76501400	C	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	missense	c.1632	p.D544E	0.957	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	136	0	0	8	19	70.37	-	-	-	G	76501400	C	G	76501400	3	3	369	1	0	0	0	0	1	0	0	0	3679	564	20	4	1686	4	CNTNAP4	16	76501400	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	75763772	76501400	13853353	43	39312										
TP53	0	genome.wustl.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	48	0	0	9	35	79.55	-	-	-	A	7578403	C	A	7578403	3	1	369	1	0	0	0	0	1	0	0	0	16477	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		7578403	73616807	44	39313										
OTOP2	0	genome.wustl.edu	37	chr17	72927091	72927091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cttcaccaacctggatgcccTccacacgttgtccgcctgcc	7	19	1	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	17	72927091	72927091	T	C	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	missense	c.1361	p.L454P	1.000	NULL	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	35	0	0	32	4	11.11	-	-	-	C	72927091	T	C	72927091	3	2	369	1	0	0	0	0	1	0	0	0	11379	1551	54	5	1379	5	OTOP2	17	72927091	Missense_Mutation	SNP	T	TCGA-AR-A0U2-01A-11D-A10G-09	65348688	72927091	8268119	45	39314										
ZNF823	0	genome.wustl.edu	37	chr19	11834071	11834071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tgtcacatggatttactcgaGgagtgttcttgttcacaata	9	7	3	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	19	11834071	11834071	G	T	SNP	ZNF823	ENST00000341191	human	ensembl	69_37n	-1	known	missense	c.278	p.P93H	0.041	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933	148	0	0	70	31	30.69	-	-	-	T	11834071	G	T	11834071	3	4	369	1	0	0	0	0	1	0	0	0	18272	1000	35	4	1558	4	ZNF823	19	11834071	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09		11834071	47294912	46	39315										
ZNF233	0	genome.wustl.edu	37	chr19	44770438	44770438	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	cccagagaaagctgtaccaaGatgtgatgctggagaacttc	11	9	0	4			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	19	44770438	44770438	G	A	SNP	ZNF233	ENST00000391958	human	ensembl	69_37n	1	known	missense	c.103	p.D35N	0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915	224	0	0	72	27	27.27	-	-	-	A	44770438	G	A	44770438	3	1	369	1	0	0	0	0	1	0	0	0	17882	942	33	2	109	2	ZNF233	19	44770438	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	32936367	44770438	14358545	47	39316										
NLRP4	0	genome.wustl.edu	37	chr19	56369409	56369409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	tgaccccgctgctcctataaCagagatcgtgtctcaaccgg	9	14	1	2			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	19	56369409	56369409	C	T	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	missense	c.650	p.T217I	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	37	0	0	10	4	28.57	-	-	-	T	56369409	C	T	56369409	3	4	369	1	0	0	0	0	1	0	0	0	10551	478	17	4	656	4	NLRP4	19	56369409	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09	11598971	56369409	2759574	48	39317										
SSTR4	0	genome.wustl.edu	37	chr20	23016492	23016492	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	ctgtgccgcgcggtgctcagCgtcgacggcctcaacatgtt	13	14	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	20	23016492	23016492	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.372	p.S124	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	28	0	0	11	4	26.67	-	-	-	T	23016492	C	T	23016492	2	4	369	1	0	0	0	0	0	0	0	1	15291	767	27	1		1	SSTR4	20	23016492	Silent	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		23016492	40009028	49	39318										
AURKA	0	genome.wustl.edu	37	chr20	54961390	54961390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	caggatgaggtacactggttGcctgcaattgcttctgcttc	11	10	1	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	20	54961390	54961390	G	A	SNP	AURKA	ENST00000312783	human	ensembl	69_37n	-1	known	missense	c.242	p.A81V	0.011	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	173	0	0	128	23	15.13	-	-	-	A	54961390	G	A	54961390	3	1	369	1	0	0	0	0	1	0	0	0	1225	1319	46	4	997	4	AURKA	20	54961390	Missense_Mutation	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09	31944898	54961390	8064130	50	39319										
SEC14L4	0	genome.wustl.edu	37	chr22	30891919	30891919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	gatcacagatccttacccttCggagcatgtcttcggatttc	8	12	2	1			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	22	30891919	30891919	C	T	SNP	SEC14L4	ENST00000255858	human	ensembl	69_37n	-1	known	missense	c.170	p.R57Q	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488	47	0	0	26	16	37.21	-	-	-	T	30891919	C	T	30891919	3	4	369	1	0	0	0	0	1	0	0	0	14072	884	31	1	1096	1	SEC14L4	22	30891919	Missense_Mutation	SNP	C	TCGA-AR-A0U2-01A-11D-A10G-09		30891919	20412647	51	39320										
IL13RA2	0	genome.wustl.edu	37	chrX	114242577	114242577	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.02	1	1	0.311755952380952	0	0.356292517006803	1	1	0	actttgcttcttactacaaaGcataattgtcgggtttcatt	6	8	2	0			TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0194733-2347-43c4-a4a3-131642c27798	15bcbeef-a0ab-4b73-878e-34328e6270f4	X	114242577	114242577	G	A	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	silent	c.915	p.C305	0.940	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	336	0	0	49	49	50	-	-	-	A	114242577	G	A	114242577	2	1	369	1	0	0	0	0	0	0	0	1	7684	963	34	4		4	IL13RA2	23	114242577	Silent	SNP	G	TCGA-AR-A0U2-01A-11D-A10G-09		114242577	41027983	52	39321										
CALML6	0	genome.wustl.edu	37	chr1	1848267	1848267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaggcccagaaccaggagagCgagctgagggcggcattccg	16	11	0	3			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	1848267	1848267	C	T	SNP	CALML6	ENST00000307786	human	ensembl	69_37n	1	known	silent	c.330	p.S110	0.213	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML6	HGNC	ENSG00000169885	61	0	0	19	28	59.57	-	-	-	T	1848267	C	T	1848267	2	4	370	1	0	0	0	0	0	0	0	1	2615	767	27	1		1	CALML6	1	1848267	Silent	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		1848267	247402354	1	39322										
KLF17	0	genome.wustl.edu	37	chr1	44595388	44595388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggtagccaggcccttcggtGggaatctaaggatgcccccc	14	13	1	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	44595388	44595388	G	A	SNP	KLF17	ENST00000372299	human	ensembl	69_37n	1	known	missense	c.445	p.G149R	0.004	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF17	HGNC	ENSG00000171872	60	0	0	19	7	26.92	-	-	-	A	44595388	G	A	44595388	3	1	370	1	0	0	0	0	1	0	0	0	8398	1348	47	4	451	4	KLF17	1	44595388	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	42747121	44595388	204655233	2	39323										
KIF2C	0	genome.wustl.edu	37	chr1	45213334	45213334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtttttcagaaacaaaaacGgagatccgtcaactccaaaa	6	9	2	2			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	45213334	45213334	G	A	SNP	KIF2C	ENST00000372224	human	ensembl	69_37n	1	known	missense	c.278	p.R93Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC	ENSG00000142945	120	0	0	37	52	58.43	-	-	-	A	45213334	G	A	45213334	3	1	370	1	0	0	0	0	1	0	0	0	8351	1116	39	1	292	1	KIF2C	1	45213334	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	617946	45213334	204037287	3	39324										
BCL9	0	genome.wustl.edu	37	chr1	147095879	147095879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccgatggtacctcaaggaCggatgggcttcccccagggc	13	14	1	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	147095879	147095879	C	T	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.3400	p.R1134W	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	44	0	0	36	30	44.78	-	-	-	T	147095879	C	T	147095879	3	4	370	1	0	0	0	0	1	0	0	0	1385	527	19	1	3426	1	BCL9	1	147095879	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	101882545	147095879	102154742	4	39325										
RGS5	0	genome.wustl.edu	37	chr1	163117185	163117185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cacaaagcgaggcagagaatCcttttccatcagggcatgga	11	10	1	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	163117185	163117185	C	T	SNP	RGS5	ENST00000313961	human	ensembl	69_37n	-1	known	missense	c.493	p.D165N	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS5	HGNC	ENSG00000143248	133	0	0	112	53	32.12	-	-	-	T	163117185	C	T	163117185	3	4	370	1	0	0	0	0	1	0	0	0	13392	855	30	2	56	2	RGS5	1	163117185	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	16021306	163117185	86133436	5	39326										
PLD5	0	genome.wustl.edu	37	chr1	242253180	242253180	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acgttccggggatcctttccGcctgtgtcgtctgtggcagt	13	12	1	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	242253180	242253180	G	A	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.1587	p.G529	0.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	287	0	0	312	117	27.27	-	-	-	A	242253180	G	A	242253180	2	1	370	1	0	0	0	0	0	0	0	1	12123	1074	38	1		1	PLD5	1	242253180	Silent	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	79135995	242253180	6997441	6	39327										
RGPD3	0	genome.wustl.edu	37	chr2	107040513	107040516	+	Frame_Shift_Del	DEL	TAGA	TAGA	-													0	0	1	0	0	0	1	1	0	attcaacttggcaggagactTagatagactcaaagcagatt							TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TAGA	TAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	2	107040513	107040516	TAGA	-	DEL	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	frame_shift_del	c.3910_3907	p.K1304fs	1.000:0.998:1.000:1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	170	0	0	142	45	24.06	-	-	-	-	107040516	TAGA	-	107040513	7	5	370	1	0	1	0	1	0	0	0	0	13370	1763	61	0	1382	0	RGPD3	2	107040513	Frame_Shift_Del	DEL	TAGA	TCGA-AR-A0U3-01A-11D-A10G-09		107040513	136158860	7	39328										
FEZF2	0	genome.wustl.edu	37	chr3	62356989	62356989	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgtggagctgcggttgaaCgctttgccgcactggttgca	15	10	0	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	62356989	62356989	C	A	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	silent	c.1023	p.A341	0.989	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	103	0	0	75	46	37.7	-	-	-	A	62356989	C	A	62356989	2	1	370	1	0	0	0	0	0	0	0	1	5872	523	19	3		3	FEZF2	3	62356989	Silent	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		62356989	135665441	8	39329										
PVRL3	0	genome.wustl.edu	37	chr3	110837787	110837787	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acatccgatactctttcataTtagacatacagtgtaagtaa	5	8	2	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	110837787	110837787	T	G	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	1	known	missense	c.787	p.L263V	0.998	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	67	0	0	46	33	41.77	-	-	-	G	110837787	T	G	110837787	3	3	370	1	0	0	0	0	1	0	0	0	12924	1490	52	5	797	5	PVRL3	3	110837787	Missense_Mutation	SNP	T	TCGA-AR-A0U3-01A-11D-A10G-09	48480798	110837787	87184643	9	39330										
DNAH5	0	genome.wustl.edu	37	chr5	13737575	13737575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtttgcagttacatcttcCatcagatgagttctttcttt	6	8	4	2			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	13737575	13737575	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.11241	p.M3747I	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	222	0	0	190	88	31.65	-	-	-	T	13737575	C	T	13737575	3	4	370	1	0	0	0	0	1	0	0	0	4640	594	21	4	2689	4	DNAH5	5	13737575	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		13737575	167177685	10	39331										
PCDHGB6	0	genome.wustl.edu	37	chr5	140788351	140788351	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtggcaaatacccagagttAtctctggagaaactcctaga	10	9	1	3			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	140788351	140788351	A	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.582	p.L194F	0.046	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	87	0	0	58	33	36.26	-	-	-	T	140788351	A	T	140788351	3	4	370	1	0	0	0	0	1	0	0	0	11640	446	16	5	584	5	PCDHGB6	5	140788351	Missense_Mutation	SNP	A	TCGA-AR-A0U3-01A-11D-A10G-09	127050776	140788351	40126909	11	39332										
IQUB	0	genome.wustl.edu	37	chr7	123150002	123150003	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	tgggatacctaataagtgtgINSaaaaatggtccttaagatat							TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	123150002	123150003	-	A	INS	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	frame_shift_ins	c.485_484	p.S162fs	0.996:0.998	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	137	0	0	107	60	35.93	-	-	-	A	123150003	-	A	123150002	7	5	370	1	0	1	1	0	0	0	0	0	7874	1294	45	0	1934	0	IQUB	7	123150002	Frame_Shift_Ins	INS	-	TCGA-AR-A0U3-01A-11D-A10G-09		123150002	35988661	12	39333										
MGAM	0	genome.wustl.edu	37	chr7	141765159	141765159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgcaggaggtgacgggacaGcgaggggtcgtcatcacccg	18	10	2	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	141765159	141765159	G	A	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.4509	p.Q1503	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	58	0	0	84	12	12.5	-	-	-	A	141765159	G	A	141765159	2	1	370	1	0	0	0	0	0	0	0	1	9612	962	34	4		4	MGAM	7	141765159	Silent	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	18615157	141765159	17373504	13	39334										
TEK	0	genome.wustl.edu	37	chr9	27169494	27169494	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggttccttcatccattcagtGccccggcatgaagtacctga	9	13	2	2			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	9	27169494	27169494	G	A	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.495	p.V165	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	76	0	0	13	22	62.86	-	-	-	A	27169494	G	A	27169494	2	1	370	1	0	0	0	0	0	0	0	1	15846	1306	46	4		4	TEK	9	27169494	Silent	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09		27169494	114043937	14	39335										
TMEM9B	0	genome.wustl.edu	37	chr11	8969901	8969901	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catgccggtcaaagacagacTttcgctgctcttggacttga	10	11	2	3			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	11	8969901	8969901	T	A	SNP	TMEM9B	ENST00000534025	human	ensembl	69_37n	-1	known	missense	c.563	p.K188M	1.000	pfam_TMEM9	pfam_TMEM9	-	no_errors	TMEM9B	HGNC	ENSG00000175348	48	0	0	49	31	38.27	-	-	-	A	8969901	T	A	8969901	3	1	370	1	0	0	0	0	1	0	0	0	16322	1609	56	5	37	5	TMEM9B	11	8969901	Missense_Mutation	SNP	T	TCGA-AR-A0U3-01A-11D-A10G-09		8969901	126036615	15	39336										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100482727	100482727	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgaatgtcatcacatatgtgTagatctagatgagaaatcac	8	6	4	4			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	100482727	100482727	T	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	silent	c.987	p.L329	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	120	0	0	92	75	44.91	-	-	-	C	100482727	T	C	100482727	2	2	370	1	0	0	0	0	0	0	0	1	17066	1625	57	5		5	UHRF1BP1L	12	100482727	Silent	SNP	T	TCGA-AR-A0U3-01A-11D-A10G-09		100482727	33369168	16	39337										
RFX4	0	genome.wustl.edu	37	chr12	107078653	107078653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agaaggcattcagatagattCgagatgcccactaagcagaa	10	8	1	5			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	107078653	107078653	C	T	SNP	RFX4	ENST00000229387	human	ensembl	69_37n	1	known	missense	c.62	p.S21L	0.003	NULL	NULL	-	no_errors	RFX4	HGNC	ENSG00000111783	94	0	0	59	28	32.18	-	-	-	T	107078653	C	T	107078653	3	4	370	1	0	0	0	0	1	0	0	0	13348	893	31	1	535	1	RFX4	12	107078653	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	6595926	107078653	26773242	17	39338										
DAO	0	genome.wustl.edu	37	chr12	109288102	109288102	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatgggctggggcgctacaaCgagaccccctgctgcagcca	13	14	0	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	109288102	109288102	C	T	SNP	DAO	ENST00000228476	human	ensembl	69_37n	1	known	nonsense	c.571	p.R191*	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887	45	0	0	31	22	41.51	-	-	-	T	109288102	C	T	109288102	4	4	370	1	0	0	0	0	0	1	0	0	4263	528	19	1	593	1	DAO	12	109288102	Nonsense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	2209449	109288102	24563793	18	39339										
WSB2	0	genome.wustl.edu	37	chr12	118472017	118472017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgcttaaaaagtcctgtatGtgaggaactctttcattttc	7	7	2	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	118472017	118472017	G	T	SNP	WSB2	ENST00000315436	human	ensembl	69_37n	-1	known	missense	c.1199	p.T400K	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,prints_G-protein_beta_WD-40_rep,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WSB2	HGNC	ENSG00000176871	154	0	0	135	58	30.05	-	-	-	T	118472017	G	T	118472017	3	4	370	1	0	0	0	0	1	0	0	0	17502	1377	48	4	19	4	WSB2	12	118472017	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	9183915	118472017	15379878	19	39340										
MAPKBP1	0	genome.wustl.edu	37	chr15	42104263	42104263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgtggccttctctcctagcGccaagtacattgtctctgtg	10	12	2	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	42104263	42104263	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	missense	c.436	p.A146T	0.953	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	71	0	0	43	31	41.33	-	-	-	A	42104263	G	A	42104263	3	1	370	1	0	0	0	0	1	0	0	0	9363	1087	38	1	454	1	MAPKBP1	15	42104263	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09		42104263	60427129	20	39341										
UNC45A	0	genome.wustl.edu	37	chr15	91496180	91496180	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaagatcctgaaggagaaGgctgtgcccatgatagaagg	14	7	0	6			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	91496180	91496180	G	T	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	1	known	missense	c.2325	p.K775N	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	24	0	0	20	13	39.39	-	-	-	T	91496180	G	T	91496180	3	4	370	1	0	0	0	0	1	0	0	0	17085	991	35	4	2395	4	UNC45A	15	91496180	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09	49391917	91496180	11035212	21	39342										
ADCY9	0	genome.wustl.edu	37	chr16	4042255	4042255	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggctcacccctgcccaccttCccttctcctgcaagatctca	5	20	3	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	4042255	4042255	C	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.2099	p.G700V	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	52	0	0	45	27	37.5	-	-	-	A	4042255	C	A	4042255	3	1	370	1	0	0	0	0	1	0	0	0	301	855	30	2	1990	2	ADCY9	16	4042255	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		4042255	86312498	22	39343										
VPS53	0	genome.wustl.edu	37	chr17	489514	489514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatgttcctcactcacttgtCttgggattcgatatacacgt	7	10	3	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	489514	489514	C	A	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	missense	c.1309	p.D437Y	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	138	0	0	36	70	66.04	-	-	-	A	489514	C	A	489514	3	1	370	1	0	0	0	0	1	0	0	0	17312	913	32	2	1244	2	VPS53	17	489514	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		489514	80705696	23	39344										
TP53	0	genome.wustl.edu	37	chr17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	ctcacaacctccgtcatgtgCtgtgactgcttgtagatggc							TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	7578429	7578429	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.501	p.Q167fs	0.986	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	64	0	0	9	29	72.5	-	-	-	-	7578429	C	-	7578429	7	5	370	1	0	1	0	1	0	0	0	0	16477	796	28	0	797	0	TP53	17	7578429	Frame_Shift_Del	DEL	C	TCGA-AR-A0U3-01A-11D-A10G-09	7088915	7578429	73616781	24	39345										
C17orf104	0	genome.wustl.edu	37	chr17	42745436	42745436	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatgacttaagccatttgtaCccttattttaatatgatgta	6	6	0	2			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	42745436	42745436	C	G	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	nonsense	c.2157	p.Y719*	0.992	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	149	0	0	51	84	61.76	-	-	-	G	42745436	C	G	42745436	4	3	370	1	0	0	0	0	0	1	0	0	1864	518	18	4	2175	4	C17orf104	17	42745436	Nonsense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	35167007	42745436	38449774	25	39346										
NMT1	0	genome.wustl.edu	37	chr17	43183002	43183002	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctaggttggactggtgctaCaataaccagtcaccagtgcg	11	11	1	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	43183002	43183002	C	T	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	nonsense	c.1486	p.Q496*	1.000	pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	102	0	0	31	48	60.76	-	-	-	T	43183002	C	T	43183002	4	4	370	1	0	0	0	0	0	1	0	0	10575	479	17	4	1532	4	NMT1	17	43183002	Nonsense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	437566	43183002	38012208	26	39347										
SMCHD1	0	genome.wustl.edu	37	chr18	2743899	2743899	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ggacctcctgctaaacttctCcttatagactggccagaact	7	13	1	2			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	18	2743899	2743899	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	silent	c.3774	p.L1258	0.575	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	160	0	0	138	85	38.12	-	-	-	T	2743899	C	T	2743899	2	4	370	1	0	0	0	0	0	0	0	1	14877	842	30	2		2	SMCHD1	18	2743899	Silent	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09		2743899	75333349	27	39348										
ALKBH7	0	genome.wustl.edu	37	chr19	6374526	6374526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcctgtctcccagcgttatGcggctggtgcacacccagga	11	15	1	0			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	6374526	6374526	G	A	SNP	ALKBH7	ENST00000245812	human	ensembl	69_37n	1	known	missense	c.429	p.M143I	1.000	NULL	NULL	-	no_errors	ALKBH7	HGNC	ENSG00000125652	52	0	0	96	21	17.95	-	-	-	A	6374526	G	A	6374526	3	1	370	1	0	0	0	0	1	0	0	0	532	1319	46	4	439	4	ALKBH7	19	6374526	Missense_Mutation	SNP	G	TCGA-AR-A0U3-01A-11D-A10G-09		6374526	52754457	28	39349										
RFXANK	0	genome.wustl.edu	37	chr19	19304795	19304795	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaagacctcatccagaccCagcagacccctgcctcagaa	7	17	2	5			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	19304795	19304795	C	T	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	nonsense	c.40	p.Q14*	0.635	pirsf_DNA-bd_RFXANK	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	88	0	0	63	32	33.68	-	-	-	T	19304795	C	T	19304795	4	4	370	1	0	0	0	0	0	1	0	0	13352	595	21	4	42	4	RFXANK	19	19304795	Nonsense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	12930269	19304795	39824188	29	39350										
FCGBP	0	genome.wustl.edu	37	chr19	40383820	40383820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtgctgacgggctggcagcCgtgctggccggatggcagga	19	10	0	1			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	40383820	40383820	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.9790	p.G3264S	0.796	smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	19	0	0	33	17	34	-	-	-	T	40383820	C	T	40383820	3	4	370	1	0	0	0	0	1	0	0	0	5824	652	23	1	6491	1	FCGBP	19	40383820	Missense_Mutation	SNP	C	TCGA-AR-A0U3-01A-11D-A10G-09	21079025	40383820	18745163	30	39351										
MRPL20	0	genome.wustl.edu	37	chr1	1337585	1337585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	caaagatttgaaagtctttgGctcgtagatggccagatccg	11	8	1	4			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	1337585	1337585	G	A	SNP	MRPL20	ENST00000344843	human	ensembl	69_37n	-1	known	missense	c.328	p.P110S	1.000	pfam_Ribosomal_L20,tigrfam_Ribosomal_L20	pfam_Ribosomal_L20,prints_Ribosomal_L20,tigrfam_Ribosomal_L20	-	no_errors	MRPL20	HGNC	ENSG00000242485	109	0	0	206	57	21.59	-	-	-	A	1337585	G	A	1337585	3	1	371	1	0	0	0	0	1	0	0	0	9858	1203	42	4	125	4	MRPL20	1	1337585	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		1337585	247913036	1	39352										
NR0B2	0	genome.wustl.edu	37	chr1	27240275	27240275	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggcctcccggcaggtgcgatGaggtgcacatagctggacgg	17	11	0	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	27240275	27240275	G	C	SNP	NR0B2	ENST00000254227	human	ensembl	69_37n	-1	known	missense	c.157	p.H53D	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B2	HGNC	ENSG00000131910	14	0	0	4	6	60	-	-	-	C	27240275	G	C	27240275	3	2	371	1	0	0	0	0	1	0	0	0	10687	1290	45	2	624	2	NR0B2	1	27240275	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	25902690	27240275	222010346	2	39353										
BCAN	0	genome.wustl.edu	37	chr1	156622540	156622540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ccctgcttccagccacacggGcccctgagggtaccagggag	13	16	0	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	156622540	156622540	G	T	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.1798	p.A600S	0.264	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	53	0	0	76	17	18.28	-	-	-	T	156622540	G	T	156622540	3	4	371	1	0	0	0	0	1	0	0	0	1349	1203	42	4	1824	4	BCAN	1	156622540	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	129382265	156622540	92628081	3	39354										
NDUFS2	0	genome.wustl.edu	37	chr1	161179917	161179917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ctaggacctaccccttgggcTtatggatgacatttatcagt	9	10	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	161179917	161179917	T	G	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.719	p.L240R	0.998	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	210	0	0	163	133	44.93	-	-	-	G	161179917	T	G	161179917	3	3	371	1	0	0	0	0	1	0	0	0	10364	1609	56	5	745	5	NDUFS2	1	161179917	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	4557377	161179917	88070704	4	39355										
CFHR1	0	genome.wustl.edu	37	chr1	196800996	196800996	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aaggtggacagccaaacagaAgctttatttgagaacaggtg	12	6	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	196800996	196800996	A	G	SNP	CFHR1	ENST00000320493	human	ensembl	69_37n	1	known	missense	c.860	p.K287R	0.003	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414	580	0	0	306	322	51.27	-	-	-	G	196800996	A	G	196800996	3	3	371	1	0	0	0	0	1	0	0	0	3313	72	3	5	882	5	CFHR1	1	196800996	Missense_Mutation	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09	35621079	196800996	52449625	5	39356										
PLXNA2	0	genome.wustl.edu	37	chr1	208216496	208216496	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tccaggtaagggattcctgaGcggtccaggtcactggtcaa	13	10	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	208216496	208216496	G	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	silent	c.3927	p.R1309	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	164	0	0	107	65	37.79	-	-	-	T	208216496	G	T	208216496	2	4	371	1	0	0	0	0	0	0	0	1	12194	958	34	4		4	PLXNA2	1	208216496	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	11415500	208216496	41034125	6	39357										
KCNH1	0	genome.wustl.edu	37	chr1	210857058	210857058	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ttgttccagtcctcactcttCccgcaagcatctttgaagcg	7	14	3	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	210857058	210857058	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	silent	c.2535	p.G845	0.033	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	88	0	0	78	15	15.96	-	-	-	A	210857058	C	A	210857058	2	1	371	1	0	0	0	0	0	0	0	1	8085	842	30	2		2	KCNH1	1	210857058	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	2640562	210857058	38393563	7	39358										
USH2A	0	genome.wustl.edu	37	chr1	216371845	216371845	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gactgagccaaccactgctcTgaaaaactcgactttcctca	6	14	2	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	216371845	216371845	T	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3893	p.Q1298P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	260	1	0.38	193	135	41.03	-	-	-	G	216371845	T	G	216371845	3	3	371	1	0	0	0	0	1	0	0	0	17133	1580	55	5	11949	5	USH2A	1	216371845	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	5514787	216371845	32878776	8	39359										
ENAH	0	genome.wustl.edu	37	chr1	225742665	225742665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	catggcacttgcgaagacatTggcatcctctttgctgccaa	9	12	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	225742665	225742665	T	C	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.292	p.N98D	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	294	0	0	188	147	43.88	-	-	-	C	225742665	T	C	225742665	3	2	371	1	0	0	0	0	1	0	0	0	5148	1812	63	5	1535	5	ENAH	1	225742665	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	9370820	225742665	23507956	9	39360										
NBAS	0	genome.wustl.edu	37	chr2	15432702	15432702	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tcccttttatactggtcatcTgcagtaaaccgctgcacgtc	7	13	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	15432702	15432702	T	A	SNP	NBAS	ENST00000442506	human	ensembl	69_37n	-1	novel	missense	c.2129	p.Q710L	0.000	NULL	pfam_Sec39	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBAS	HGNC	ENSG00000151779	186	0	0	53	472	89.9	-	-	-	A	15432702	T	A	15432702	3	1	371	1	0	0	0	0	1	0	0	0	10258	1567	55	5	2177	5	NBAS	2	15432702	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09		15432702	227766671	10	39361										
ASXL2	0	genome.wustl.edu	37	chr2	25994378	25994378	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cctgctggaatggtgggtgaTgggcagcctgactgcgggga	19	8	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	25994378	25994378	T	C	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	0.816	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	532	0	0	244	254	51	-	-	-	C	25994378	T	C	25994378	2	2	371	1	0	0	0	0	0	0	0	1	1071	1451	51	5		5	ASXL2	2	25994378	Silent	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	10561676	25994378	217204995	11	39362										
PRKCE	0	genome.wustl.edu	37	chr2	46234725	46234725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggtgagaatggcgaagtccgGcaaggccaggccaagcgcct	16	11	0	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	46234725	46234725	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	silent	c.1188	p.R396	1.000	superfamily_Kinase-like_dom,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	79	0	0	46	12	20.69	-	-	-	A	46234725	G	A	46234725	2	1	371	1	0	0	0	0	0	0	0	1	12592	1190	42	4		4	PRKCE	2	46234725	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	20240347	46234725	196964648	12	39363										
PUS10	0	genome.wustl.edu	37	chr2	61175203	61175203	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	agcctgagttttcaagtggaGgcggaagtggtgctcatcca	14	8	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	61175203	61175203	G	C	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	missense	c.1426	p.L476V	1.000	superfamily_PsdUridine_synth_cat_dom	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	219	1	0.45	143	94	39.66	-	-	-	C	61175203	G	C	61175203	3	2	371	1	0	0	0	0	1	0	0	0	12914	1000	35	4	175	4	PUS10	2	61175203	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	14940478	61175203	182024170	13	39364										
NEB	0	genome.wustl.edu	37	chr2	152507244	152507244	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aacatgtccactgggctggaGaacttagttttccacttctc	8	11	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	152507244	152507244	G	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.7071	p.F2357L	0.042	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	315	1	0.32	171	124	42.03	-	-	-	T	152507244	G	T	152507244	3	4	371	1	0	0	0	0	1	0	0	0	10374	933	33	2	19135	2	NEB	2	152507244	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	91332041	152507244	90692129	14	39365										
LRP2	0	genome.wustl.edu	37	chr2	170063595	170063595	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aagaacgctcaatctttggtCtctgcccatagtcagcccag	8	13	4	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	170063595	170063595	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.6635	p.R2212I	0.695	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	188	0	0	109	60	35.29	-	-	-	A	170063595	C	A	170063595	3	1	371	1	0	0	0	0	1	0	0	0	9022	913	32	2	7496	2	LRP2	2	170063595	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	17556351	170063595	73135778	15	39366										
INPP5D	0	genome.wustl.edu	37	chr2	233925287	233925287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	agcttcctcgtgcgtgccagCgagtccatctcccgggcata	11	15	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	233925287	233925287	C	T	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	1	known	silent	c.99	p.S33	0.991	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	42	0	0	33	27	45	-	-	-	T	233925287	C	T	233925287	2	4	371	1	0	0	0	0	0	0	0	1	7810	767	27	1		1	INPP5D	2	233925287	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	63861692	233925287	9274086	16	39367										
UGT1A10	0	genome.wustl.edu	37	chr2	234545725	234545725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aggtgcacagtgccctgctcCtctttcctatgtccccaatg	8	15	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	234545725	234545725	C	T	SNP	UGT1A10	ENST00000344644	human	ensembl	69_37n	1	known	missense	c.557	p.P186L	0.720	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A10	HGNC	ENSG00000242515	496	0	0	321	231	41.85	-	-	-	T	234545725	C	T	234545725	3	4	371	1	0	0	0	0	1	0	0	0	17042	681	24	4	559	4	UGT1A10	2	234545725	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	620438	234545725	8653648	17	39368										
CNTN6	0	genome.wustl.edu	37	chr3	1320096	1320096	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tgcttttctttgttttccaaGatattgaagactttgaaact	6	6	1	4			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	1320096	1320096	G	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	splice_site	c.359-1	e4-1	1.000	-	-	-	no_errors	CNTN6	HGNC	ENSG00000134115	155	0	0	69	55	44.35	-	-	-	T	1320096	G	T	1320096	5	4	371	1	0	0	0	0	0	0	1	0	3675	956	33	2	372	2	CNTN6	3	1320096	Splice_Site	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		1320096	196702334	18	39369										
CNOT10	0	genome.wustl.edu	37	chr3	32754743	32754744	+	Frame_Shift_Ins	INS	-	-	T													0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aaatttgcccaagcagtgtgINSttttttgcttgtagacctgt							TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	32754743	32754744	-	T	INS	CNOT10	ENST00000454516	human	ensembl	69_37n	1	known	frame_shift_ins	c.635_636	p.L214fs	1.000:1.000	NULL	pfam_TPR-1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	375	0	0	111	333	75	-	-	-	T	32754744	-	T	32754743	7	5	371	1	0	1	1	0	0	0	0	0	3648	1377	48	0	473	0	CNOT10	3	32754743	Frame_Shift_Ins	INS	-	TCGA-AR-A1AH-01A-11D-A12B-09	31434647	32754743	165267687	19	39370										
MYD88	0	genome.wustl.edu	37	chr3	38180431	38180431	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ctgctggacgcctggcagggAcgccctggcgcctctgtagg	16	14	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	38180431	38180431	A	T	SNP	MYD88	ENST00000417037	human	ensembl	69_37n	1	known	silent	c.279	p.G93	0.801	pfam_Death,superfamily_DEATH-like,smart_Death,pirsf_Myelin_different_resp_MyD88,pfscan_Death	pfam_TIR_dom,pfam_Death,superfamily_DEATH-like,superfamily_TIR_dom,smart_Death,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936	35	0	0	14	6	27.27	-	-	-	T	38180431	A	T	38180431	2	4	371	1	0	0	0	0	0	0	0	1	10095	262	10	5		5	MYD88	3	38180431	Silent	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09	5425688	38180431	159841999	20	39371										
SCN10A	0	genome.wustl.edu	37	chr3	38768529	38768529	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gagttcaatagcagggcgatGaacaggttaagcacctgaag	13	7	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	38768529	38768529	G	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.2655	p.F885L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	134	0	0	13	70	84.34	-	-	-	T	38768529	G	T	38768529	3	4	371	1	0	0	0	0	1	0	0	0	14000	1281	45	2	3263	2	SCN10A	3	38768529	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	588098	38768529	159253901	21	39372										
NSUN3	0	genome.wustl.edu	37	chr3	93845211	93845211	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	atagcaaggacttgctcccaCgacttcacatttgctcccac	6	15	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	93845211	93845211	C	G	SNP	NSUN3	ENST00000314622	human	ensembl	69_37n	1	known	missense	c.900	p.H300Q	0.688	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694	161	0	0	28	54	65.85	-	-	-	G	93845211	C	G	93845211	3	3	371	1	0	0	0	0	1	0	0	0	10752	535	19	3	922	3	NSUN3	3	93845211	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	55076682	93845211	104177219	22	39373										
COL6A5	0	genome.wustl.edu	37	chr3	130187808	130187808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ataacctcagtgcttgattaCtttcacattgcccccactcc	4	15	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	130187808	130187808	C	T	SNP	COL6A5	ENST00000512836	human	ensembl	69_37n	1	putative	missense	c.1714	p.L572F	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL6A5	HGNC	ENSG00000172752	285	1	0.35	50	122	70.93	-	-	-	T	130187808	C	T	130187808	3	4	371	1	0	0	0	0	1	0	0	0	3732	576	20	4	7106	4	COL6A5	3	130187808	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	36342597	130187808	67834622	23	39374										
UGT2B15	0	genome.wustl.edu	37	chr4	69536304	69536304	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aagtaacaactgagctgtatCagcagaaagactgacgtcca	9	9	1	4			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	4	69536304	69536304	C	A	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	silent	c.33	p.L11	0.997	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	208	1	0.48	34	81	70.43	-	-	-	A	69536304	C	A	69536304	2	1	371	1	0	0	0	0	0	0	0	1	17055	813	29	2		2	UGT2B15	4	69536304	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		69536304	121617972	24	39375										
TLL1	0	genome.wustl.edu	37	chr4	166913988	166913988	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	accatgctatgtcaaagaagCgaggggccctctaccaactt	9	12	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	4	166913988	166913988	C	T	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	nonsense	c.313	p.R105*	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	456	0	0	58	183	75.62	-	-	-	T	166913988	C	T	166913988	4	4	371	1	0	0	0	0	0	1	0	0	16040	760	27	1	323	1	TLL1	4	166913988	Nonsense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	97377684	166913988	24240288	25	39376										
CDH6	0	genome.wustl.edu	37	chr5	31267600	31267600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	catgagaacttaccgctactTcttgctgctcttttgggtgg	10	10	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	31267600	31267600	T	G	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	missense	c.20	p.F7C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	82	0	0	30	28	48.28	-	-	-	G	31267600	T	G	31267600	3	3	371	1	0	0	0	0	1	0	0	0	3143	1783	62	5	22	5	CDH6	5	31267600	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09		31267600	149647660	26	39377										
HEATR7B2	0	genome.wustl.edu	37	chr5	41048471	41048471	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	taaacgtgttttccataggtCtaccaattttgggtgaatta	8	6	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	41048471	41048471	C	G	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1639	p.D547H	0.952	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	348	0	0	146	128	46.55	-	-	-	G	41048471	C	G	41048471	3	3	371	1	0	0	0	0	1	0	0	0	7086	913	32	2	3226	2	HEATR7B2	5	41048471	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	9780871	41048471	139866789	27	39378										
PCDHA9	0	genome.wustl.edu	37	chr5	140230439	140230439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ctggatctacagagcgaacgGgagaaccctctgcttcctca	10	13	3	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	140230439	140230439	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.2359	p.G787R	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	119	0	0	14	48	77.42	-	-	-	A	140230439	G	A	140230439	3	1	371	1	0	0	0	0	1	0	0	0	11604	1233	43	4	2361	4	PCDHA9	5	140230439	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	99181968	140230439	40684821	28	39379										
FAM193B	0	genome.wustl.edu	37	chr5	176964948	176964948	+	Frame_Shift_Del	DEL	G	G	-													0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gtggggaattccagaggcccGagagcttatgtgccgacagg							TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	176964948	176964948	G	-	DEL	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	frame_shift_del	c.275	p.S92fs	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	154	0	0	31	58	59.18	-	-	-	-	176964948	G	-	176964948	7	5	371	1	0	1	0	1	0	0	0	0	5567	1059	37	0	2122	0	FAM193B	5	176964948	Frame_Shift_Del	DEL	G	TCGA-AR-A1AH-01A-11D-A12B-09	36734509	176964948	3950312	29	39380										
C6orf52	0	genome.wustl.edu	37	chr6	10671667	10671667	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	acaattagtatgataattgcGgagtttaatgaacaccttgc	8	6	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	10671667	10671667	G	A	SNP	C6orf52	ENST00000467832	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6orf52	HGNC	ENSG00000137434	192	0	0	111	93	45.59	-	-	-	A	10671667	G	A	10671667	1	1	371	0	1	0	0	0	0	0	0	0	2387	1131	39	1		1	C6orf52	6	10671667	RNA	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		10671667	160443400	30	39381										
SIRT5	0	genome.wustl.edu	37	chr6	13599264	13599264	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	taaggatcccattcttccagGtgtgaagaggcaggctgcgg	14	9	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	13599264	13599264	G	C	SNP	SIRT5	ENST00000379250	human	ensembl	69_37n	1	known	silent	c.618	p.R206	1.000	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT5	HGNC	ENSG00000124523	105	0	0	117	46	28.22	-	-	-	C	13599264	G	C	13599264	2	2	371	1	0	0	0	0	0	0	0	1	14430	1275	44	4		4	SIRT5	6	13599264	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	2927597	13599264	157515803	31	39382										
RNF182	0	genome.wustl.edu	37	chr6	13977498	13977498	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tttgtgccaaatgcctctacAagatcatagactttggggac	9	9	2	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	13977498	13977498	A	C	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.148	p.K50Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	242	0	0	279	98	25.99	-	-	-	C	13977498	A	C	13977498	3	2	371	1	0	0	0	0	1	0	0	0	13552	131	5	5	150	5	RNF182	6	13977498	Missense_Mutation	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09	378234	13977498	157137569	32	39383										
DPCR1	0	genome.wustl.edu	37	chr6	30919364	30919364	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ataccatctccagcaaagccTacagaacacgaagaaatgac	6	12	1	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	30919364	30919364	T	C	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	silent	c.3123	p.P1041	0.001	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	675	0	0	632	104	14.09	-	-	-	C	30919364	T	C	30919364	2	2	371	1	0	0	0	0	0	0	0	1	4747	1509	53	5		5	DPCR1	6	30919364	Silent	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	16941866	30919364	140195703	33	39384										
MDGA1	0	genome.wustl.edu	37	chr6	37614094	37614094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	caggatgtactccagcagctGccccttctccacacgccgga	9	17	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	37614094	37614094	G	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.2113	p.Q705K	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	122	0	0	99	54	35.06	-	-	-	T	37614094	G	T	37614094	3	4	371	1	0	0	0	0	1	0	0	0	9477	1328	46	4	791	4	MDGA1	6	37614094	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	6694730	37614094	133500973	34	39385										
AKD1	0	genome.wustl.edu	37	chr6	109850252	109850252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tctctctaatataagttcagCccttcttttagcaatcgtat	4	10	4	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	109850252	109850252	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.3595	p.A1199T	1.000	smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	349	0	0	283	85	23.1	-	-	-	T	109850252	C	T	109850252	3	4	371	1	0	0	0	0	1	0	0	0	460	739	26	4	2192	4	AKD1	6	109850252	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	72236158	109850252	61264815	35	39386										
VNN2	0	genome.wustl.edu	37	chr6	133078858	133078858	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tccagaatgtctatattctcGttcatgagattcaaggcatc	7	9	4	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	133078858	133078858	G	C	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.165	p.N55K	1.000	pirsf_Biotinidase_euk,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	304	0	0	201	135	40.06	-	-	-	C	133078858	G	C	133078858	3	2	371	1	0	0	0	0	1	0	0	0	17280	1136	40	3	1425	3	VNN2	6	133078858	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	23228606	133078858	38036209	36	39387										
SYNE1	0	genome.wustl.edu	37	chr6	152639373	152639373	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	attccattaactttgaattaCagccatctaattcctctccc	2	13	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	152639373	152639373	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.16415	p.C5472F	0.999	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	327	0	0	328	137	29.46	-	-	-	A	152639373	C	A	152639373	3	1	371	1	0	0	0	0	1	0	0	0	15537	478	17	4	10295	4	SYNE1	6	152639373	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	19560515	152639373	18475694	37	39388										
SYNE1	0	genome.wustl.edu	37	chr6	152716678	152716678	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ccagcagttctcccaaaaacAtttcaactttatgaacttca	3	12	3	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	152716678	152716678	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.7685	p.M2562K	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	462	0	0	557	124	18.21	-	-	-	T	152716678	A	T	152716678	3	4	371	1	0	0	0	0	1	0	0	0	15537	217	8	5	19165	5	SYNE1	6	152716678	Missense_Mutation	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09	77305	152716678	18398389	38	39389										
OPRM1	0	genome.wustl.edu	37	chr6	154412347	154412347	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggactcccattcacatttacGtcatcattaaagccttggtt	6	11	3	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	154412347	154412347	G	C	SNP	OPRM1	ENST00000434900	human	ensembl	69_37n	1	known	missense	c.1183	p.V395L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Neuropept_W_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	335	0	0	391	157	28.65	-	-	-	C	154412347	G	C	154412347	3	2	371	1	0	0	0	0	1	0	0	0	10960	1145	40	3	1248	3	OPRM1	6	154412347	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	1695669	154412347	16702720	39	39390										
C7orf10	0	genome.wustl.edu	37	chr7	40723677	40723677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cgctgtctctggcttccaaaGcctgctgcattccttggccc	9	16	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	40723677	40723677	G	C	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	1	known	missense	c.1133	p.S378T	0.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	353	0	0	316	79	20	-	-	-	C	40723677	G	C	40723677	3	2	371	1	0	0	0	0	1	0	0	0	2399	971	34	4	1072	4	C7orf10	7	40723677	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		40723677	118414986	40	39391										
KIAA1324L	0	genome.wustl.edu	37	chr7	86522367	86522367	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ccaactttttctcaggcaaaGaaattcctttaatgcaccat	4	11	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	86522367	86522367	G	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.2735	p.S912Y	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	160	0	0	95	86	47.51	-	-	-	T	86522367	G	T	86522367	3	4	371	1	0	0	0	0	1	0	0	0	8276	942	33	2	366	2	KIAA1324L	7	86522367	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	45798690	86522367	72616296	41	39392										
SND1	0	genome.wustl.edu	37	chr7	127731927	127731927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gcccaagagtcagccaagagCgccagggtgagttcttacct	12	12	2	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	127731927	127731927	C	T	SNP	SND1	ENST00000354725	human	ensembl	69_37n	1	known	silent	c.2661	p.S887	0.884	pfam_Staphylococcal_nuclease,superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococcal_nuclease,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococcal_nuclease	-	no_errors	SND1	HGNC	ENSG00000197157	458	0	0	250	225	47.17	-	-	-	T	127731927	C	T	127731927	2	4	371	1	0	0	0	0	0	0	0	1	14933	767	27	1		1	SND1	7	127731927	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	41209560	127731927	31406736	42	39393										
VIPR2	0	genome.wustl.edu	37	chr7	158902573	158902573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gtctctcccacattggcaggCcgccagcacgtgatgttgtc	11	14	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	158902573	158902573	C	T	SNP	VIPR2	ENST00000418475	human	ensembl	69_37n	-1	putative	missense	c.175	p.A59T	0.963	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt_2	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt,prints_GPCR_2_VIP_rcpt_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VIPR2	HGNC	ENSG00000106018	82	0	0	53	32	28.32	-	-	-	T	158902573	C	T	158902573	3	4	371	1	0	0	0	0	1	0	0	0	17267	726	26	4	1171	4	VIPR2	7	158902573	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	31170646	158902573	236090	43	39394										
CLDN23	0	genome.wustl.edu	37	chr8	8560424	8560424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggcagctgcctcctgctgctGggcggcttctcgctggcgct	15	15	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	8560424	8560424	G	T	SNP	CLDN23	ENST00000519106	human	ensembl	69_37n	1	known	silent	c.516	p.L172	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN23	HGNC	ENSG00000253958	11	0	0	5	7	58.33	-	-	-	T	8560424	G	T	8560424	2	4	371	1	0	0	0	0	0	0	0	1	3514	1335	47	4		4	CLDN23	8	8560424	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		8560424	137803598	44	39395										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24257811	24257811	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tgtgtgatgaatcagtatctGaggtgagaccttgtcatcct	11	7	3	4			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	24257811	24257811	G	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	silent	c.1140	p.L380	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	174	0	0	109	73	39.89	-	-	-	A	24257811	G	A	24257811	2	1	371	1	0	0	0	0	0	0	0	1	254	1277	45	2		2	ADAMDEC1	8	24257811	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	15697387	24257811	122106211	45	39396										
ADRA1A	0	genome.wustl.edu	37	chr8	26721870	26721870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tcttggccaccacgtagacgCggcagtacatgaccaggatg	12	12	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	26721870	26721870	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	missense	c.617	p.R206H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	63	0	0	47	29	38.16	-	-	-	T	26721870	C	T	26721870	3	4	371	1	0	0	0	0	1	0	0	0	334	768	27	1	1082	1	ADRA1A	8	26721870	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	2464059	26721870	119642152	46	39397										
TM2D2	0	genome.wustl.edu	37	chr8	38852949	38852951	+	In_Frame_Del	DEL	ATC	ATC	-													0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aattcaccagtaagatcatgAtcatcatcatacggtctttg							TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	38852949	38852951	ATC	-	DEL	TM2D2	ENST00000397070	human	ensembl	69_37n	-1	known	in_frame_del	c.74_72	p.M24in_frame_del	0.000:0.000:0.000	NULL	pfam_TM2	-	no_errors	TM2D2	HGNC	ENSG00000169490	331	0	0	232	121	34.28	-	-	-	-	38852951	ATC	-	38852949	7	5	371	1	0	1	0	1	0	0	0	0	16059	333	12	0	453	0	TM2D2	8	38852949	In_Frame_Del	DEL	ATC	TCGA-AR-A1AH-01A-11D-A12B-09	12131079	38852949	107511073	47	39398										
WNK2	0	genome.wustl.edu	37	chr9	96051807	96051807	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ccctggagcccctgagagggGaccagccccgctcagaggtc	14	16	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	9	96051807	96051807	G	C	SNP	WNK2	ENST00000297954	human	ensembl	69_37n	1	known	missense	c.4882	p.D1628H	0.088	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	27	0	0	3	7	70	-	-	-	C	96051807	G	C	96051807	3	2	371	1	0	0	0	0	1	0	0	0	17475	1174	41	2	4845	2	WNK2	9	96051807	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		96051807	45161624	48	39399										
SLC27A4	0	genome.wustl.edu	37	chr9	131105549	131105549	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cgcttcatccgggtcttcatCaagaccatcaggcgcgatat	9	13	5	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	9	131105549	131105549	C	A	SNP	SLC27A4	ENST00000372870	human	ensembl	69_37n	1	known	missense	c.220	p.Q74K	0.968	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	163	0	0	23	78	77.23	-	-	-	A	131105549	C	A	131105549	3	1	371	1	0	0	0	0	1	0	0	0	14617	816	29	2	140	2	SLC27A4	9	131105549	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	35053742	131105549	10107882	49	39400										
ARHGAP22	0	genome.wustl.edu	37	chr10	49701493	49701493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tccacttacccctgggcataCgcctgctcctcttcagacac	6	18	2	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	10	49701493	49701493	C	T	SNP	ARHGAP22	ENST00000417247	human	ensembl	69_37n	-1	known	missense	c.41	p.R14H	0.000	pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805	15	0	0	7	5	41.67	-	-	-	T	49701493	C	T	49701493	3	4	371	1	0	0	0	0	1	0	0	0	874	551	19	1		1	ARHGAP22	10	49701493	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		49701493	85833254	50	39401										
TLL2	0	genome.wustl.edu	37	chr10	98146742	98146742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tcttatcggcggccagctcgTagccagggtcacaggcacac	12	14	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	10	98146742	98146742	T	C	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.1820	p.Y607C	0.987	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_EG-like_dom	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	103	0	0	19	34	64.15	-	-	-	C	98146742	T	C	98146742	3	2	371	1	0	0	0	0	1	0	0	0	16041	1638	57	5	1259	5	TLL2	10	98146742	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	48445249	98146742	37388005	51	39402										
ZNF214	0	genome.wustl.edu	37	chr11	7021508	7021508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cacattcaggacaagtatagGgtttctcccctgtatggact	9	10	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	7021508	7021508	G	A	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	missense	c.1406	p.P469L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	311	0	0	171	119	41.03	-	-	-	A	7021508	G	A	7021508	3	1	371	1	0	0	0	0	1	0	0	0	17866	1232	43	4	418	4	ZNF214	11	7021508	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		7021508	127985008	52	39403										
AMBRA1	0	genome.wustl.edu	37	chr11	46419289	46419289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tggagggctggggtgaggagGtgtgggcggcaccaggttca	22	6	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	46419289	46419289	G	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.3608	p.T1203N	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	206	0	0	119	119	49.79	-	-	-	T	46419289	G	T	46419289	3	4	371	1	0	0	0	0	1	0	0	0	565	1261	44	4	292	4	AMBRA1	11	46419289	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	39397781	46419289	88587227	53	39404										
OR4C15	0	genome.wustl.edu	37	chr11	55321983	55321983	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gtaactgagtttgtcctcctGggactttcacagaatccaaa	8	10	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	55321983	55321983	G	C	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	silent	c.201	p.L67	0.679	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	191	0	0	113	85	42.71	-	-	-	C	55321983	G	C	55321983	2	2	371	1	0	0	0	0	0	0	0	1	11121	1335	47	4		4	OR4C15	11	55321983	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	8902694	55321983	79684533	54	39405										
RPS6KA4	0	genome.wustl.edu	37	chr11	64137029	64137029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gccagatcctgcgcagcctcGtgtcggccgtgagcttcatg	13	14	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	64137029	64137029	G	A	SNP	RPS6KA4	ENST00000334205	human	ensembl	69_37n	1	known	missense	c.1540	p.V514M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302	13	0	0	4	7	63.64	-	-	-	A	64137029	G	A	64137029	3	1	371	1	0	0	0	0	1	0	0	0	13739	1145	40	1	1590	1	RPS6KA4	11	64137029	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	8815046	64137029	70869487	55	39406										
UNC93B1	0	genome.wustl.edu	37	chr11	67766699	67766699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gagatagggcgcgtgggagcCccgcggaggccgctgcttca	18	12	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	67766699	67766699	C	A	SNP	UNC93B1	ENST00000227471	human	ensembl	69_37n	-1	known	missense	c.631	p.G211C	1.000	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	50	0	0	54	13	19.4	-	-	-	A	67766699	C	A	67766699	3	1	371	1	0	0	0	0	1	0	0	0	17094	623	22	4	1189	4	UNC93B1	11	67766699	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	3629670	67766699	67239817	56	39407										
PTPRO	0	genome.wustl.edu	37	chr12	15673153	15673153	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	agagaatagctaatctgctgCcagcatggtactacaacttc	8	10	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	15673153	15673153	C	A	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	missense	c.1798	p.P600T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	143	0	0	21	55	72.37	-	-	-	A	15673153	C	A	15673153	3	1	371	1	0	0	0	0	1	0	0	0	12892	739	26	4	1836	4	PTPRO	12	15673153	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		15673153	118178742	57	39408										
ITPR2	0	genome.wustl.edu	37	chr12	26580852	26580852	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	agtaaagtacttacattagcTgcaccaagaagtattaatgt	7	6	0	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	26580852	26580852	T	G	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.6939	p.A2313	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	198	0	0	645	96	12.96	-	-	-	G	26580852	T	G	26580852	2	3	371	1	0	0	0	0	0	0	0	1	7975	1567	55	5		5	ITPR2	12	26580852	Silent	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	10907699	26580852	107271043	58	39409										
WNT10B	0	genome.wustl.edu	37	chr12	49362067	49362067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tgcgtgcatgaccccagcagCcagcatggagaaggaaaaag	13	10	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	49362067	49362067	C	T	SNP	WNT10B	ENST00000301061	human	ensembl	69_37n	-1	known	missense	c.373	p.A125T	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884	133	0	0	22	56	71.79	-	-	-	T	49362067	C	T	49362067	3	4	371	1	0	0	0	0	1	0	0	0	17480	739	26	4	804	4	WNT10B	12	49362067	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	22781215	49362067	84489828	59	39410										
SVOP	0	genome.wustl.edu	37	chr12	109372367	109372367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tacttgcccaagccaagccaGtgagaacagacagcttccac	8	14	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	109372367	109372367	G	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	missense	c.73	p.L25M	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	84	0	0	69	57	45.24	-	-	-	T	109372367	G	T	109372367	3	4	371	1	0	0	0	0	1	0	0	0	15514	1029	36	4		4	SVOP	12	109372367	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	60010300	109372367	24479528	60	39411										
ACACB	0	genome.wustl.edu	37	chr12	109675151	109675151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggaccataggttcttcatccGcgccatcatcaggcactctg	9	14	5	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	109675151	109675151	G	A	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.4628	p.R1543H	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	227	1	0.44	129	96	42.48	-	-	-	A	109675151	G	A	109675151	3	1	371	1	0	0	0	0	1	0	0	0	107	1087	38	1	4758	1	ACACB	12	109675151	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	302784	109675151	24176744	61	39412										
ACAD10	0	genome.wustl.edu	37	chr12	112186223	112186223	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gctcttggttcccatggataCcccagggataaaaatcatcc	8	12	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	112186223	112186223	C	A	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	missense	c.2681	p.T894N	0.970	superfamily_AcylCoA_DH/oxidase	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	162	1	0.61	103	61	36.97	-	-	-	A	112186223	C	A	112186223	3	1	371	1	0	0	0	0	1	0	0	0	108	507	18	4	2747	4	ACAD10	12	112186223	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	2511072	112186223	21665672	62	39413										
ING1	0	genome.wustl.edu	37	chr13	111371953	111371953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	accacgaccacgacgacggcGcctcgggcacacccaaggag	12	17	0	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	13	111371953	111371953	G	T	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	missense	c.943	p.A315S	0.976	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	48	0	0	10	33	76.74	-	-	-	T	111371953	G	T	111371953	3	4	371	1	0	0	0	0	1	0	0	0	7789	1087	38	3	1097	3	ING1	13	111371953	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		111371953	3797925	63	39414										
ACOT4	0	genome.wustl.edu	37	chr14	74058810	74058810	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggcgcgctcttccgggcccaCgcgcgctactgcgccgacgc	14	19	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	14	74058810	74058810	C	T	SNP	ACOT4	ENST00000326303	human	ensembl	69_37n	1	known	silent	c.147	p.H49	0.999	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465	13	0	0	5	6	54.55	-	-	-	T	74058810	C	T	74058810	2	4	371	1	0	0	0	0	0	0	0	1	153	535	19	1		1	ACOT4	14	74058810	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		74058810	33290730	64	39415										
TIPIN	0	genome.wustl.edu	37	chr15	66644500	66644500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gcttgggtatatttcttttaActgttctctttggaggtaca	9	6	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	15	66644500	66644500	A	G	SNP	TIPIN	ENST00000261881	human	ensembl	69_37n	-1	known	missense	c.179	p.V60A	1.000	NULL	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131	251	0	0	46	113	71.07	-	-	-	G	66644500	A	G	66644500	3	3	371	1	0	0	0	0	1	0	0	0	16020	43	2	5	750	5	TIPIN	15	66644500	Missense_Mutation	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09		66644500	35886892	65	39416										
ZNF598	0	genome.wustl.edu	37	chr16	2050140	2050140	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cctctggcagggatggcgtaCggcagcgccaaccccacagg	14	15	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	2050140	2050140	C	A	SNP	ZNF598	ENST00000431526	human	ensembl	69_37n	-1	known	silent	c.1410	p.P470	0.000	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962	12	0	0	7	9	56.25	-	-	-	A	2050140	C	A	2050140	2	1	371	1	0	0	0	0	0	0	0	1	18124	523	19	3		3	ZNF598	16	2050140	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		2050140	88304613	66	39417										
TNRC6A	0	genome.wustl.edu	37	chr16	24801817	24801817	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ttacccagcgttgagtggaaCaaactgcctagcaatcagca	9	11	1	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	24801817	24801817	C	A	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.1854	p.N618K	0.995	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	227	1	0.44	120	93	43.66	-	-	-	A	24801817	C	A	24801817	3	1	371	1	0	0	0	0	1	0	0	0	16435	477	17	4	1876	4	TNRC6A	16	24801817	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	22751677	24801817	65552936	67	39418										
BANP	0	genome.wustl.edu	37	chr16	88098920	88098920	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ctcctggccccatccgtcttCaaagccagcagtggccaggt	10	16	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	88098920	88098920	C	T	SNP	BANP	ENST00000286122	human	ensembl	69_37n	1	known	silent	c.1326	p.F442	0.029	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530	86	0	0	51	8	13.56	-	-	-	T	88098920	C	T	88098920	2	4	371	1	0	0	0	0	0	0	0	1	1314	825	29	2		2	BANP	16	88098920	Silent	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	63297103	88098920	2255833	68	39419										
TP53	0	genome.wustl.edu	37	chr17	7579364	7579365	+	Frame_Shift_Del	DEL	CC	CC	-													0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gcaagaagcccagacggaaaCcgtagctgccctggtaggtt							TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	7579364	7579365	CC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323_322	p.G108fs	0.910:0.925	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	57	0	0	8	22	68.75	-	-	-	-	7579365	CC	-	7579364	7	5	371	1	0	1	0	1	0	0	0	0	16477	507	18	0	979	0	TP53	17	7579364	Frame_Shift_Del	DEL	CC	TCGA-AR-A1AH-01A-11D-A12B-09		7579364	73615846	69	39420										
SLC47A1	0	genome.wustl.edu	37	chr17	19452969	19452969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cttacccagacctatgtcacGatcttcattccagctcttcc	4	16	4	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	19452969	19452969	G	A	SNP	SLC47A1	ENST00000571335	human	ensembl	69_37n	1	novel	missense	c.32	p.R11Q	0.913	NULL	pfam_MATE	-	no_errors	SLC47A1	HGNC	ENSG00000142494	361	0	0	57	131	69.68	-	-	-	A	19452969	G	A	19452969	3	1	371	1	0	0	0	0	1	0	0	0	14736	1045	37	1	495	1	SLC47A1	17	19452969	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	11873605	19452969	61742241	70	39421										
SCN4A	0	genome.wustl.edu	37	chr17	62034711	62034711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tccaaggcaatcttgcacacGcactccttgtagctcttgcc	7	15	2	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	62034711	62034711	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.2187	p.C729	0.981	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	184	0	0	116	100	46.3	-	-	-	A	62034711	G	A	62034711	2	1	371	1	0	0	0	0	0	0	0	1	14008	1079	38	1		1	SCN4A	17	62034711	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	42581742	62034711	19160499	71	39422										
DNAH17	0	genome.wustl.edu	37	chr17	76423090	76423090	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ttcacattcttgaaaggcgaCtaccacgtagggggtctttt	10	9	3	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	76423090	76423090	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.12757	p.V4253F	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	126	0	0	84	30	26.32	-	-	-	A	76423090	C	A	76423090	3	1	371	1	0	0	0	0	1	0	0	0	4637	565	20	4	716	4	DNAH17	17	76423090	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	14388379	76423090	4772120	72	39423										
OSBPL1A	0	genome.wustl.edu	37	chr18	21745043	21745043	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	acgcacctcgtcttccagtcCtcttctgacttggacctgtt	7	15	3	1			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	18	21745043	21745043	C	G	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	missense	c.2736	p.E912D	0.998	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	649	0	0	549	122	18.18	-	-	-	G	21745043	C	G	21745043	3	3	371	1	0	0	0	0	1	0	0	0	11350	680	24	4	124	4	OSBPL1A	18	21745043	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		21745043	56332205	73	39424										
ASXL3	0	genome.wustl.edu	37	chr18	31314340	31314340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gaaggaaaagaaaacagaacCttggaaagaaaaattctttg	9	4	1	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	18	31314340	31314340	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.1043	p.P348L	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	172	0	0	117	61	34.27	-	-	-	T	31314340	C	T	31314340	3	4	371	1	0	0	0	0	1	0	0	0	1072	681	24	4	1081	4	ASXL3	18	31314340	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	9569297	31314340	46762908	74	39425										
KHSRP	0	genome.wustl.edu	37	chr19	6415313	6415314	+	Splice_Site	INS	-	-	TG													0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cctccggtggccacttgcgcINStgtgggtggacaaaggcagg							TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	6415313	6415314	-	TG	INS	KHSRP	ENST00000398148	human	ensembl	69_37n	-1	known	splice_site_ins	c.1967-2_1967-1	e19-1	0.989:0.952	-	-	-	no_errors	KHSRP	HGNC	ENSG00000088247	33	0	0	33	15	31.25	-	-	-	TG	6415314	-	TG	6415313	8	5	371	1	0	1	1	0	0	0	1	0	8203	811	28	0	177	0	KHSRP	19	6415313	Splice_Site	INS	-	TCGA-AR-A1AH-01A-11D-A12B-09		6415313	52713670	75	39426										
MUC16	0	genome.wustl.edu	37	chr19	9070668	9070668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cctgagacacggttgaatgaGtccctccctggaaaagtgtg	12	10	0	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	9070668	9070668	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16778	p.T5593N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	363	0	0	212	163	43.35	-	-	-	T	9070668	G	T	9070668	3	4	371	1	0	0	0	0	1	0	0	0	10045	1029	36	4	27073	4	MUC16	19	9070668	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	2655355	9070668	50058315	76	39427										
CYP4F11	0	genome.wustl.edu	37	chr19	16038292	16038292	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	atatccttgggtgcgacagcAgctgacatgattgaggacca	12	9	0	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	16038292	16038292	A	T	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	silent	c.345	p.A115	0.613	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	151	0	0	89	80	46.78	-	-	-	T	16038292	A	T	16038292	2	4	371	1	0	0	0	0	0	0	0	1	4217	202	7	5		5	CYP4F11	19	16038292	Silent	SNP	A	TCGA-AR-A1AH-01A-11D-A12B-09	6967624	16038292	43090691	77	39428										
MEF2B	0	genome.wustl.edu	37	chr19	19258546	19258546	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	aaggccggatcacccccttcGcctgccagcctccgaaactt	8	18	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	19258546	19258546	G	A	SNP	MEF2B	ENST00000162023	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	0.321	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2B	HGNC	ENSG00000213999	83	0	0	55	29	26.61	-	-	-	A	19258546	G	A	19258546	2	1	371	1	0	0	0	0	0	0	0	1	9527	1074	38	1		1	MEF2B	19	19258546	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	3220254	19258546	39870437	78	39429										
PSG7	0	genome.wustl.edu	37	chr19	43433600	43433600	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cagaagatactcacggaggaGattcagggtgactgggtcac	14	8	3	4			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	43433600	43433600	G	T	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	missense	c.703	p.L235I	0.509	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	304	0	0	168	129	43.29	-	-	-	T	43433600	G	T	43433600	3	4	371	1	0	0	0	0	1	0	0	0	12740	942	33	2	572	2	PSG7	19	43433600	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	24175054	43433600	15695383	79	39430										
DKKL1	0	genome.wustl.edu	37	chr19	49869131	49869131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cagcggaggggagcttcgagGgtgatttgaaggttaggacg	19	5	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	49869131	49869131	G	T	SNP	DKKL1	ENST00000221498	human	ensembl	69_37n	1	known	missense	c.406	p.G136C	0.031	NULL	NULL	-	no_errors	DKKL1	HGNC	ENSG00000104901	206	0	0	137	79	36.57	-	-	-	T	49869131	G	T	49869131	3	4	371	1	0	0	0	0	1	0	0	0	4584	1232	43	4	420	4	DKKL1	19	49869131	Missense_Mutation	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	6435531	49869131	9259852	80	39431										
MYH14	0	genome.wustl.edu	37	chr19	50713890	50713890	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cggagagcgggaggcggctgCgactgccgcgggaccagatc	19	12	0	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	50713890	50713890	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	nonsense	c.268	p.R90*	1.000	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	22	0	0	10	9	47.37	-	-	-	T	50713890	C	T	50713890	4	4	371	1	0	0	0	0	0	1	0	0	10105	760	27	1	270	1	MYH14	19	50713890	Nonsense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09	844759	50713890	8415093	81	39432										
PEG3	0	genome.wustl.edu	37	chr19	57286770	57286770	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	tgtttactaagattagagctTctctcaaattcatcactgcc	5	10	4	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	57286770	57286770	T	C	SNP	PEG3	ENST00000221722	human	ensembl	69_37n	-1	known	silent	c.870	p.R290	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	PEG3	HGNC	ENSG00000198300	300	1	0.33	211	100	32.15	-	-	-	C	57286770	T	C	57286770	2	2	371	1	0	0	0	0	0	0	0	1	11793	1780	62	5		5	PEG3	19	57286770	Silent	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	6572880	57286770	1842213	82	39433										
SOX12	0	genome.wustl.edu	37	chr20	307342	307342	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ctgggctttctgtccaggctGccccctggcccggccggcct	13	18	1	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	20	307342	307342	G	T	SNP	SOX12	ENST00000342665	human	ensembl	69_37n	1	known	silent	c.774	p.L258	0.997	pirsf_SOX-12/11/4a	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pirsf_SOX-12/11/4a,pfscan_HMG_superfamily	-	no_errors	SOX12	HGNC	ENSG00000177732	8	0	0	5	5	50	-	-	-	T	307342	G	T	307342	2	4	371	1	0	0	0	0	0	0	0	1	15032	1306	46	4		4	SOX12	20	307342	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09		307342	62718178	83	39434										
MYH7B	0	genome.wustl.edu	37	chr20	33577724	33577724	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ggtccactacgcaggcgtggTaggtgcttgctggaacccca	14	12	0	0			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	20	33577724	33577724	T	C	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	splice_site	c.1893+2	e18+2	1.000	-	-	-	no_errors	MYH7B	HGNC	ENSG00000078814	85	0	0	57	38	40	-	-	-	C	33577724	T	C	33577724	5	2	371	1	0	0	0	0	0	0	1	0	10112	1652	57	5	1965	5	MYH7B	20	33577724	Splice_Site	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	33270382	33577724	29447796	84	39435										
PPEF1	0	genome.wustl.edu	37	chrX	18822127	18822127	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	ccaagattcttaataaatacCagttgaagatgctcatcagg	7	8	3	3			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	18822127	18822127	C	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1183	p.Q395K	0.034	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	447	0	0	251	164	39.42	-	-	-	A	18822127	C	A	18822127	3	1	371	1	0	0	0	0	1	0	0	0	12380	595	21	4	1225	4	PPEF1	23	18822127	Missense_Mutation	SNP	C	TCGA-AR-A1AH-01A-11D-A12B-09		18822127	136448433	85	39436										
CXorf23	0	genome.wustl.edu	37	chrX	19971133	19971133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gattcatagatcacagcttgTttactctgaagctcggccaa	8	10	3	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	19971133	19971133	T	C	SNP	CXorf23	ENST00000340625	human	ensembl	69_37n	-1	known	missense	c.427	p.T143A	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CXorf23	HGNC	ENSG00000173681	237	0	0	176	118	40.14	-	-	-	C	19971133	T	C	19971133	3	2	371	1	0	0	0	0	1	0	0	0	4134	1722	60	5	470	5	CXorf23	23	19971133	Missense_Mutation	SNP	T	TCGA-AR-A1AH-01A-11D-A12B-09	1149006	19971133	135299427	86	39437										
POU3F4	0	genome.wustl.edu	37	chrX	82763506	82763506	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	cccctcgggcatcactgggtGaccagtctgagcgacggggg	16	13	2	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	82763506	82763506	G	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	silent	c.174	p.V58	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	46	0	0	27	13	32.5	-	-	-	T	82763506	G	T	82763506	2	4	371	1	0	0	0	0	0	0	0	1	12350	1277	45	2		2	POU3F4	23	82763506	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	62792373	82763506	72507054	87	39438										
L1CAM	0	genome.wustl.edu	37	chrX	153130155	153130155	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.953986987641084	0.849507735583685	1.39010356731876	0.611645569620253	1	1	0	gagatgttgccaaaatctgaGatccctggggggatgcaggg	16	7	1	2			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	153130155	153130155	G	T	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	silent	c.3057	p.I1019	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	132	0	0	93	34	26.77	-	-	-	T	153130155	G	T	153130155	2	4	371	1	0	0	0	0	0	0	0	1	8642	932	33	2		2	L1CAM	23	153130155	Silent	SNP	G	TCGA-AR-A1AH-01A-11D-A12B-09	70366649	153130155	2140405	88	39439										
MYOM3	0	genome.wustl.edu	37	chr1	24402671	24402671	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ggcttgtcctccaggagcacGggatcagtgggcatggacgg	17	10	1	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	1	24402671	24402671	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	silent	c.2682	p.P894	0.003	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	80	0	0	30	15	33.33	-	-	-	A	24402671	G	A	24402671	2	1	372	1	0	0	0	0	0	0	0	1	10165	1103	39	1		1	MYOM3	1	24402671	Silent	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		24402671	224847950	1	39440										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tgctgctgctgctgctgctgAagctgcggaggctgaggctg	17	10	0	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	21	0	0	22	6	21.43	-	-	-	C	154842243	A	C	154842243	2	2	372	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-AR-A1AI-01A-11D-A12Q-09	130439572	154842243	94408378	2	39441										
ANGEL2	0	genome.wustl.edu	37	chr1	213174228	213174228	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	atagataaaattctttgtccCcgtgaagactgttcctggcc	8	10	1	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	1	213174228	213174228	C	A	SNP	ANGEL2	ENST00000366962	human	ensembl	69_37n	-1	known	silent	c.1161	p.R387	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	298	0	0	24	4	14.29	-	-	-	A	213174228	C	A	213174228	2	1	372	1	0	0	0	0	0	0	0	1	609	610	22	4		4	ANGEL2	1	213174228	Silent	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	58331985	213174228	36076393	3	39442										
ADCY3	0	genome.wustl.edu	37	chr2	25047329	25047329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ccaaggcctcgttccagcgtCgcatctcatagacacgttcc	8	16	1	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	2	25047329	25047329	C	T	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	missense	c.2654	p.R885Q	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	172	0	0	50	8	13.79	-	-	-	T	25047329	C	T	25047329	3	4	372	1	0	0	0	0	1	0	0	0	295	884	31	1	804	1	ADCY3	2	25047329	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		25047329	218152044	4	39443										
ZDBF2	0	genome.wustl.edu	37	chr2	207174888	207174888	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gaaaaaaaaggttacctgggCtgacttgcaaggtaaggagg							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	2	207174888	207174888	C	-	DEL	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	frame_shift_del	c.5636	p.A1879fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	161	0	0	27	7	20	-	-	-	-	207174888	C	-	207174888	7	5	372	1	0	1	0	1	0	0	0	0	17695	797	28	0	5646	0	ZDBF2	2	207174888	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09	182127559	207174888	36024485	5	39444										
IGSF10	0	genome.wustl.edu	37	chr3	151160895	151160895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tcacttcagtccttttctggGatgcagcttctatcctgggg	10	11	4	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	3	151160895	151160895	G	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.5840	p.S1947F	0.999	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	274	0	0	60	19	24.05	-	-	-	A	151160895	G	A	151160895	3	1	372	1	0	0	0	0	1	0	0	0	7651	1174	41	2	2087	2	IGSF10	3	151160895	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		151160895	46861535	6	39445										
TAPT1	0	genome.wustl.edu	37	chr4	16177795	16177795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ggcatgttttacaatatccaCggcaatttctgatgcaatta	7	8	1	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	4	16177795	16177795	C	T	SNP	TAPT1	ENST00000405303	human	ensembl	69_37n	-1	known	missense	c.1054	p.V352M	1.000	pfam_Membrane_Tatp1/CMV_rcpt	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762	380	0	0	26	14	34.15	-	-	-	T	16177795	C	T	16177795	3	4	372	1	0	0	0	0	1	0	0	0	15646	536	19	1	673	1	TAPT1	4	16177795	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		16177795	174976481	7	39446										
ANKRD17	0	genome.wustl.edu	37	chr4	73957689	73957689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	atgtgcaaactgtggaggagGatatgctaatggaagagaaa	14	3	0	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	4	73957689	73957689	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.5656	p.P1886S	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	298	0	0	61	8	11.59	-	-	-	A	73957689	G	A	73957689	3	1	372	1	0	0	0	0	1	0	0	0	646	1174	41	2	2179	2	ANKRD17	4	73957689	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	57779894	73957689	117196587	8	39447										
CDS1	0	genome.wustl.edu	37	chr4	85525478	85525478	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	aattccaccatcctcagataGaacccctgagattctcaaaa	4	13	2	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	4	85525478	85525478	G	C	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	1	known	missense	c.200	p.R67T	1.000	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	367	0	0	42	13	23.64	-	-	-	C	85525478	G	C	85525478	3	2	372	1	0	0	0	0	1	0	0	0	3206	942	33	2	206	2	CDS1	4	85525478	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	11567789	85525478	105628798	9	39448										
ZNF330	0	genome.wustl.edu	37	chr4	142151378	142151378	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ctctgtgaagatgatcaattTgagcatcaagccagctgcca	9	10	3	4			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	4	142151378	142151378	T	A	SNP	ZNF330	ENST00000262990	human	ensembl	69_37n	1	known	missense	c.477	p.F159L	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445	483	0	0	64	10	13.51	-	-	-	A	142151378	T	A	142151378	3	1	372	1	0	0	0	0	1	0	0	0	17944	1809	63	5	499	5	ZNF330	4	142151378	Missense_Mutation	SNP	T	TCGA-AR-A1AI-01A-11D-A12Q-09	56625900	142151378	49002898	10	39449										
LPCAT1	0	genome.wustl.edu	37	chr5	1463930	1463930	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tgcgaaggcagggtacatttCtgcaaacctgtggaagtcag	13	8	2	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	5	1463930	1463930	C	T	SNP	LPCAT1	ENST00000283415	human	ensembl	69_37n	-1	known	missense	c.1441	p.E481K	0.472	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	LPCAT1	HGNC	ENSG00000153395	198	0	0	76	27	26.21	-	-	-	T	1463930	C	T	1463930	3	4	372	1	0	0	0	0	1	0	0	0	8976	922	32	2	167	2	LPCAT1	5	1463930	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		1463930	179451330	11	39450										
BRIX1	0	genome.wustl.edu	37	chr5	34925371	34925371	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	catcacagctgcaaaatacaGagagaaacagcaagtgaaag	9	8	1	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	5	34925371	34925371	G	C	SNP	BRIX1	ENST00000336767	human	ensembl	69_37n	1	known	missense	c.833	p.R278T	0.936	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	81	0	0	9	7	43.75	-	-	-	C	34925371	G	C	34925371	3	2	372	1	0	0	0	0	1	0	0	0	1523	942	33	2	871	2	BRIX1	5	34925371	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	33461441	34925371	145989889	12	39451										
CMYA5	0	genome.wustl.edu	37	chr5	79084809	79084809	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tttagatctttctctggaatCaaaggactccagctgaaagt	8	8	3	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	5	79084809	79084809	C	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.11571	p.I3857M	0.993	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	304	0	0	26	5	16.13	-	-	-	G	79084809	C	G	79084809	3	3	372	1	0	0	0	0	1	0	0	0	3620	816	29	2	11609	2	CMYA5	5	79084809	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	44159438	79084809	101830451	13	39452										
TAF7	0	genome.wustl.edu	37	chr5	140699073	140699073	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cttcggcaattatttcccacCgagtactaacagcttcagca	6	13	1	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	5	140699073	140699073	C	G	SNP	TAF7	ENST00000313368	human	ensembl	69_37n	-1	known	missense	c.539	p.R180P	1.000	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7	HGNC	ENSG00000178913	319	0	0	50	9	15.25	-	-	-	G	140699073	C	G	140699073	3	3	372	1	0	0	0	0	1	0	0	0	15624	652	23	3	514	3	TAF7	5	140699073	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	61614264	140699073	40216187	14	39453										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711613	140711613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	aactccccagtcttccatcaGgactcctactctgcctacat	4	17	3	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	5	140711613	140711613	G	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.1362	p.Q454H	0.001	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	344	0	0	42	12	22.22	-	-	-	T	140711613	G	T	140711613	3	4	372	1	0	0	0	0	1	0	0	0	11623	991	35	4	1364	4	PCDHGA1	5	140711613	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	12540	140711613	40203647	15	39454										
COL12A1	0	genome.wustl.edu	37	chr6	75893090	75893090	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tttctctctgacataagtcaTtgctttgccagtatttgtag	7	8	3	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	6	75893090	75893090	T	G	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.1567	p.M523L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	199	0	0	37	9	19.57	-	-	-	G	75893090	T	G	75893090	3	3	372	1	0	0	0	0	1	0	0	0	3699	1493	52	5	7852	5	COL12A1	6	75893090	Missense_Mutation	SNP	T	TCGA-AR-A1AI-01A-11D-A12Q-09		75893090	95221977	16	39455										
CDK19	0	genome.wustl.edu	37	chr6	110948277	110948277	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gggattgcttgtttttatatCttcctgacgacagtgaaaaa	9	6	1	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	6	110948277	110948277	C	T	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.718	p.D240N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	407	0	0	47	23	32.86	-	-	-	T	110948277	C	T	110948277	3	4	372	1	0	0	0	0	1	0	0	0	3164	913	32	2	818	2	CDK19	6	110948277	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	35055187	110948277	60166790	17	39456										
RFX6	0	genome.wustl.edu	37	chr6	117252535	117252535	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ttccttcttcctcatcccaaTgtatgtatggaacttccaac	4	13	2	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	6	117252535	117252535	T	C	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.2653	p.C885R	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	370	0	0	67	10	12.99	-	-	-	C	117252535	T	C	117252535	3	2	372	1	0	0	0	0	1	0	0	0	13350	1464	51	5	2727	5	RFX6	6	117252535	Missense_Mutation	SNP	T	TCGA-AR-A1AI-01A-11D-A12Q-09	6304258	117252535	53862532	18	39457										
RSPH10B2	0	genome.wustl.edu	37	chr7	6820992	6820992	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tgagcaacagcggacgctctActctatgagttacatgaata	9	9	2	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	7	6820992	6820992	A	G	SNP	RSPH10B2	ENST00000297186	human	ensembl	69_37n	1	known	missense	c.1643	p.Y548C	0.009	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B2	HGNC	ENSG00000169402	59	0	0	9	2	18.18	-	-	-	G	6820992	A	G	6820992	3	3	372	1	0	0	0	0	1	0	0	0	13790	391	14	5	4382	5	RSPH10B2	7	6820992	Missense_Mutation	SNP	A	TCGA-AR-A1AI-01A-11D-A12Q-09		6820992	152317671	19	39458										
RAMP3	0	genome.wustl.edu	37	chr7	45222967	45222967	+	Frame_Shift_Del	DEL	G	G	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ttctgactgtcgccatggctGgcctggtggtgtggcgcagc							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	7	45222967	45222967	G	-	DEL	RAMP3	ENST00000242249	human	ensembl	69_37n	1	known	frame_shift_del	c.403	p.G135fs	0.034	pfam_RAMP	pfam_RAMP	-	no_errors	RAMP3	HGNC	ENSG00000122679	33	0	0	4	2	33.33	-	-	-	-	45222967	G	-	45222967	7	5	372	1	0	1	0	1	0	0	0	0	13106	1348	47	0	413	0	RAMP3	7	45222967	Frame_Shift_Del	DEL	G	TCGA-AR-A1AI-01A-11D-A12Q-09	38401975	45222967	113915696	20	39459										
COL1A2	0	genome.wustl.edu	37	chr7	94056944	94056944	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ctttcacctttgcagggcccCcctggtccccctggccctcc	8	21	1	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	7	94056944	94056944	C	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	silent	c.3273	p.P1091	0.998	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	134	0	0	29	10	25.64	-	-	-	A	94056944	C	A	94056944	2	1	372	1	0	0	0	0	0	0	0	1	3708	610	22	4		4	COL1A2	7	94056944	Silent	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	48833977	94056944	65081719	21	39460										
DYNC1I1	0	genome.wustl.edu	37	chr7	95668673	95668673	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	atggcagtgggcccaatcgaCttttctcacctgtttgtcac	9	12	2	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	7	95668673	95668673	C	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	missense	c.1500	p.D500E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	166	0	0	44	6	12	-	-	-	A	95668673	C	A	95668673	3	1	372	1	0	0	0	0	1	0	0	0	4877	564	20	4	1550	4	DYNC1I1	7	95668673	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	1611729	95668673	63469990	22	39461										
MSR1	0	genome.wustl.edu	37	chr8	16007748	16007748	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ttattgtaatacctggccttCcggcatatcctgggagtcct							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	8	16007748	16007748	C	-	DEL	MSR1	ENST00000262101	human	ensembl	69_37n	-1	known	frame_shift_del	c.971	p.G324fs	0.784	pfam_Collagen	pfam_Srcr_rcpt,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MSR1	HGNC	ENSG00000038945	58	0	0	16	2	11.11	-	-	-	-	16007748	C	-	16007748	7	5	372	1	0	1	0	1	0	0	0	0	9958	855	30	0	448	0	MSR1	8	16007748	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09		16007748	130356274	23	39462										
LACTB2	0	genome.wustl.edu	37	chr8	71581315	71581315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	agcccaacacacgcacgactCgattggacagccgctcgacg	10	16	0	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	8	71581315	71581315	C	G	SNP	LACTB2	ENST00000276590	human	ensembl	69_37n	-1	known	missense	c.41	p.R14P	1.000	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	LACTB2	HGNC	ENSG00000147592	20	0	0	6	4	40	-	-	-	G	71581315	C	G	71581315	3	3	372	1	0	0	0	0	1	0	0	0	8652	884	31	3	853	3	LACTB2	8	71581315	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	55573567	71581315	74782707	24	39463										
OSR2	0	genome.wustl.edu	37	chr8	99963751	99963751	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cttcacatctgaacaggaatCtccacacaaatgtcccacat	4	14	3	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	8	99963751	99963751	C	T	SNP	OSR2	ENST00000457907	human	ensembl	69_37n	1	known	missense	c.1124	p.S375F	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	98	0	0	15	11	42.31	-	-	-	T	99963751	C	T	99963751	3	4	372	1	0	0	0	0	1	0	0	0	11367	913	32	2	771	2	OSR2	8	99963751	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	28382436	99963751	46400271	25	39464										
TTC39B	0	genome.wustl.edu	37	chr9	15210087	15210087	+	Frame_Shift_Del	DEL	T	T	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tcttttaaatgacttttaccTtcactcagttgctccaggga							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	9	15210087	15210087	T	-	DEL	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	frame_shift_del	c.690	p.E231fs	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	134	0	0	8	2	20	-	-	-	-	15210087	T	-	15210087	7	5	372	1	0	1	0	1	0	0	0	0	16805	1623	56	0	1439	0	TTC39B	9	15210087	Frame_Shift_Del	DEL	T	TCGA-AR-A1AI-01A-11D-A12Q-09		15210087	126003344	26	39465										
TRPM6	0	genome.wustl.edu	37	chr9	77455078	77455078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gactgagatcacaagcttggGcagttccattttccactctt	8	11	2	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	9	77455078	77455078	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.406	p.P136S	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	332	0	0	42	15	26.32	-	-	-	A	77455078	G	A	77455078	3	1	372	1	0	0	0	0	1	0	0	0	16686	1203	42	4	5802	4	TRPM6	9	77455078	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	62244991	77455078	63758353	27	39466										
ARID5B	0	genome.wustl.edu	37	chr10	63662061	63662061	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	aaggatccgatttgcatagcGgagctccagctgttgtggga	14	8	0	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	10	63662061	63662061	G	C	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	silent	c.165	p.A55	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	201	0	0	28	17	37.78	-	-	-	C	63662061	G	C	63662061	2	2	372	1	0	0	0	0	0	0	0	1	924	1103	39	3		3	ARID5B	10	63662061	Silent	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		63662061	71872686	28	39467										
USP47	0	genome.wustl.edu	37	chr11	11964198	11964198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tggagataatggggacagcaGcaaaagtactgagacaagtg	14	5	0	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	11	11964198	11964198	G	T	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	missense	c.2690	p.S897I	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	125	0	0	23	4	14.81	-	-	-	T	11964198	G	T	11964198	3	4	372	1	0	0	0	0	1	0	0	0	17175	971	34	4	2500	4	USP47	11	11964198	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		11964198	123042318	29	39468										
RAG1	0	genome.wustl.edu	37	chr11	36597453	36597453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tcatgaccaaagagactgtgGatgcagtttgtgagttaatt	11	5	1	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	11	36597453	36597453	G	A	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.2599	p.D867N	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	178	0	0	57	11	16.18	-	-	-	A	36597453	G	A	36597453	3	1	372	1	0	0	0	0	1	0	0	0	13086	1174	41	2	2601	2	RAG1	11	36597453	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	24633255	36597453	98409063	30	39469										
ANAPC5	0	genome.wustl.edu	37	chr12	121747576	121747576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ggccactaagaacatggcacGacctttgtccaggatagccc	10	13	0	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	12	121747576	121747576	G	A	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	missense	c.1984	p.R662C	0.999	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	53	0	0	14	6	30	-	-	-	A	121747576	G	A	121747576	3	1	372	1	0	0	0	0	1	0	0	0	605	1058	37	1	291	1	ANAPC5	12	121747576	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		121747576	12104319	31	39470										
BRCA2	0	genome.wustl.edu	37	chr13	32921032	32921032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cgattacctgtgtaccctttCggtaagacatgtttaaattt	7	8	0	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	13	32921032	32921032	C	T	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.7006	p.R2336C	0.118	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	461	0	0	64	11	14.67	-	-	-	T	32921032	C	T	32921032	3	4	372	1	0	0	0	0	1	0	0	0	1507	898	31	1	7052	1	BRCA2	13	32921032	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		32921032	82248846	32	39471										
MYH7	0	genome.wustl.edu	37	chr14	23894170	23894170	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	atcttgaagtagagcttcatCcagggccaattcttgacccc	8	12	3	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	14	23894170	23894170	C	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.2487	p.W829C	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	223	0	0	33	12	26.67	-	-	-	A	23894170	C	A	23894170	3	1	372	1	0	0	0	0	1	0	0	0	10111	856	30	2	3396	2	MYH7	14	23894170	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		23894170	83455370	33	39472										
PRKD1	0	genome.wustl.edu	37	chr14	30095732	30095732	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tccagaacccagtacttcatCaggaaaaatctgatatactg	6	10	3	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	14	30095732	30095732	C	G	SNP	PRKD1	ENST00000331968	human	ensembl	69_37n	-1	known	missense	c.1756	p.D586H	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	185	0	0	22	5	18.52	-	-	-	G	30095732	C	G	30095732	3	3	372	1	0	0	0	0	1	0	0	0	12599	826	29	2	1010	2	PRKD1	14	30095732	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	6201562	30095732	77253808	34	39473										
DUOX2	0	genome.wustl.edu	37	chr15	45392973	45392973	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tttttgccaaacctcttcttCagtccagggcctcccagctc	6	16	3	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	15	45392973	45392973	C	G	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.2985	p.L995	0.931	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	345	0	0	37	21	36.21	-	-	-	G	45392973	C	G	45392973	2	3	372	1	0	0	0	0	0	0	0	1	4836	813	29	2		2	DUOX2	15	45392973	Silent	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		45392973	57138419	35	39474										
DMXL2	0	genome.wustl.edu	37	chr15	51766785	51766785	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	aaaagattaataagtgagctCacacctataagggtatataa	7	5	1	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	15	51766785	51766785	C	G	SNP	DMXL2	ENST00000560891	human	ensembl	69_37n	-1	novel	nonstop	c.1343	p.*448S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMXL2	HGNC	ENSG00000104093	215	0	0	21	9	30	-	-	-	G	51766785	C	G	51766785	4	3	372	1	0	0	0	0	0	0	0	0	4631	813	29	2	2208	2	DMXL2	15	51766785	Nonstop_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	6373812	51766785	50764607	36	39475										
LCTL	0	genome.wustl.edu	37	chr15	66853439	66853439	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	atagcctttttctgccattgCctatagggacagcaagcagg							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	15	66853439	66853439	C	-	DEL	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	frame_shift_del	c.610	p.A204fs	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	67	0	0	16	2	11.11	-	-	-	-	66853439	C	-	66853439	7	5	372	1	0	1	0	1	0	0	0	0	8748	753	26	0	1125	0	LCTL	15	66853439	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09	15086654	66853439	35677953	37	39476										
PDXDC1	0	genome.wustl.edu	37	chr16	15112739	15112739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	caaataagcccacagacaaaCtccgtgccctgcctctgtgg	8	15	1	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	16	15112739	15112739	C	T	SNP	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	missense	c.1006	p.L336F	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	1013	0	0	208	35	14.4	-	-	-	T	15112739	C	T	15112739	3	4	372	1	0	0	0	0	1	0	0	0	11769	565	20	4	1052	4	PDXDC1	16	15112739	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		15112739	75242014	38	39477										
PSMD7	0	genome.wustl.edu	37	chr16	74334086	74334086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ggcaaaagaaagtacttgatGtatcgaacagttttgcaggt	11	5	0	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	16	74334086	74334086	G	A	SNP	PSMD7	ENST00000219313	human	ensembl	69_37n	1	known	missense	c.148	p.V50I	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PSMD7	HGNC	ENSG00000103035	325	0	0	82	15	15.46	-	-	-	A	74334086	G	A	74334086	3	1	372	1	0	0	0	0	1	0	0	0	12783	1377	48	4	154	4	PSMD7	16	74334086	Missense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	59221347	74334086	16020667	39	39478										
NEURL4	0	genome.wustl.edu	37	chr17	7225003	7225003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gcagggaaggaggcagccctGggccaccaccgcctgccccg	15	17	0	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	17	7225003	7225003	G	A	SNP	NEURL4	ENST00000571887	human	ensembl	69_37n	-1	novel	nonsense	c.2863	p.Q955*	0.948	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NEURL4	HGNC	ENSG00000215041	34	0	0	11	4	26.67	-	-	-	A	7225003	G	A	7225003	4	1	372	1	0	0	0	0	0	1	0	0	10419	1348	47	4	1761	4	NEURL4	17	7225003	Nonsense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		7225003	73970207	40	39479										
TP53	0	genome.wustl.edu	37	chr17	7577130	7577130	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ggcacaaacacgcacctcaaAgctgttccgtcccagtagat	8	14	1	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	17	7577130	7577130	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.808	p.F270I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	156	0	0	23	13	36.11	-	-	-	T	7577130	A	T	7577130	3	4	372	1	0	0	0	0	1	0	0	0	16477	72	3	5	478	5	TP53	17	7577130	Missense_Mutation	SNP	A	TCGA-AR-A1AI-01A-11D-A12Q-09	352127	7577130	73618080	41	39480										
CHD3	0	genome.wustl.edu	37	chr17	7796726	7796726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gtcagcagctgctgtggcggCggcagcggcagcagcagcag	18	12	1	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	17	7796726	7796726	C	T	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.632	p.A211V	1.000	superfamily_HMG_superfamily	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	54	0	0	21	7	25	-	-	-	T	7796726	C	T	7796726	3	4	372	1	0	0	0	0	1	0	0	0	3355	768	27	1	931	1	CHD3	17	7796726	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	219596	7796726	73398484	42	39481										
MPP2	0	genome.wustl.edu	37	chr17	41960570	41960570	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ccagccctagcagccaggaaCctggaagtggggctcctgga	14	13	0	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	17	41960570	41960570	C	A	SNP	MPP2	ENST00000461854	human	ensembl	69_37n	-1	known	splice_site	c.375+1	e4+1	1.000	-	-	-	no_errors	MPP2	HGNC	ENSG00000108852	25	0	0	13	5	27.78	-	-	-	A	41960570	C	A	41960570	5	1	372	1	0	0	0	0	0	0	1	0	9806	521	18	4	1394	4	MPP2	17	41960570	Splice_Site	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	34163844	41960570	39234640	43	39482										
USP32	0	genome.wustl.edu	37	chr17	58275782	58275782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gggcgattcttctgagatgaCaggaaatacagttctgtcct	11	8	3	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	17	58275782	58275782	C	T	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	silent	c.3273	p.L1091	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	418	0	0	69	16	18.82	-	-	-	T	58275782	C	T	58275782	2	4	372	1	0	0	0	0	0	0	0	1	17160	465	17	4		4	USP32	17	58275782	Silent	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	16315212	58275782	22919428	44	39483										
MC5R	0	genome.wustl.edu	37	chr18	13826448	13826448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ctgcccggggccagctctgcGcggcagaggaccagcatgca	15	15	1	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	18	13826448	13826448	G	A	SNP	MC5R	ENST00000324750	human	ensembl	69_37n	1	known	silent	c.684	p.A228	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melancort_rcpt_5	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melancort_rcpt_5,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC5R	HGNC	ENSG00000176136	166	0	0	61	13	17.57	-	-	-	A	13826448	G	A	13826448	2	1	372	1	0	0	0	0	0	0	0	1	9438	1074	38	1		1	MC5R	18	13826448	Silent	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09		13826448	64250800	45	39484										
ZNF675	0	genome.wustl.edu	37	chr19	23836780	23836780	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tgaggattgggtaaaagcctTgccacattcttcacatatgt	9	8	2	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	19	23836780	23836780	T	G	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	missense	c.955	p.K319Q	0.993	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	202	0	0	16	6	27.27	-	-	-	G	23836780	T	G	23836780	3	3	372	1	0	0	0	0	1	0	0	0	18178	1821	63	5	755	5	ZNF675	19	23836780	Missense_Mutation	SNP	T	TCGA-AR-A1AI-01A-11D-A12Q-09		23836780	35292203	46	39485										
CYP2A13	0	genome.wustl.edu	37	chr19	41594877	41594877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	gttcaccattcacttggggcCccggcgggtcgtggtgctgt	15	12	2	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	19	41594877	41594877	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.224	p.P75L	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	137	0	0	53	10	15.87	-	-	-	T	41594877	C	T	41594877	3	4	372	1	0	0	0	0	1	0	0	0	4192	623	22	4	230	4	CYP2A13	19	41594877	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	17758097	41594877	17534106	47	39486										
NLRP12	0	genome.wustl.edu	37	chr19	54313970	54313970	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ctccgtgggccgtttctcctCccagcagaggcaccagggtc							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	19	54313970	54313970	C	-	DEL	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	frame_shift_del	c.943	p.E315fs	0.995	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	52	0	0	14	2	12.5	-	-	-	-	54313970	C	-	54313970	7	5	372	1	0	1	0	1	0	0	0	0	10546	864	30	0	2370	0	NLRP12	19	54313970	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09	12719093	54313970	4815013	48	39487										
LENG1	0	genome.wustl.edu	37	chr19	54660722	54660722	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	tgtgcctccgctgcactctgGcccaggtatgtcaggatgcc	12	14	2	0			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	19	54660722	54660722	G	A	SNP	LENG1	ENST00000222224	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	1.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617	80	0	0	30	4	11.76	-	-	-	A	54660722	G	A	54660722	2	1	372	1	0	0	0	0	0	0	0	1	8777	1190	42	4		4	LENG1	19	54660722	Silent	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	346752	54660722	4468261	49	39488										
ZNF582	0	genome.wustl.edu	37	chr19	56896091	56896091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cagaattgaaggcctttccaCattccttacattcatatggt	6	10	1	2			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	19	56896091	56896091	C	T	SNP	ZNF582	ENST00000301310	human	ensembl	69_37n	-1	known	missense	c.695	p.C232Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	229	0	0	30	11	26.83	-	-	-	T	56896091	C	T	56896091	3	4	372	1	0	0	0	0	1	0	0	0	18110	478	17	4	862	4	ZNF582	19	56896091	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09	2235369	56896091	2232892	50	39489										
PDRG1	0	genome.wustl.edu	37	chr20	30534308	30534308	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	taagccaataccttgggcctCaaaaaggcggttgaccttca	9	11	2	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	20	30534308	30534308	C	G	SNP	PDRG1	ENST00000202017	human	ensembl	69_37n	-1	known	missense	c.310	p.E104Q	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356	283	0	0	92	25	21.37	-	-	-	G	30534308	C	G	30534308	3	3	372	1	0	0	0	0	1	0	0	0	11763	835	29	2	99	2	PDRG1	20	30534308	Missense_Mutation	SNP	C	TCGA-AR-A1AI-01A-11D-A12Q-09		30534308	32491212	51	39490										
PDGFB	0	genome.wustl.edu	37	chr22	39626161	39626161	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cactgtctcacacttgcatgCcaggtggtcttccagcgtca							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	22	39626161	39626161	C	-	DEL	PDGFB	ENST00000331163	human	ensembl	69_37n	-1	known	frame_shift_del	c.529	p.A177fs	0.995	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	pfam_PD_growth_factor,pfam_PDGF_N,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PDGFB	HGNC	ENSG00000100311	45	0	0	13	2	13.33	-	-	-	-	39626161	C	-	39626161	7	5	372	1	0	1	0	1	0	0	0	0	11731	739	26	0	204	0	PDGFB	22	39626161	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09		39626161	11678405	52	39491										
PKDREJ	0	genome.wustl.edu	37	chr22	46654720	46654720	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	ctgggctttcctttagatgcAggttttgcaacctccctggg	11	11	0	1			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	22	46654720	46654720	A	C	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.4500	p.P1500	0.000	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	417	0	0	80	38	32.2	-	-	-	C	46654720	A	C	46654720	2	2	372	1	0	0	0	0	0	0	0	1	12044	175	7	5		5	PKDREJ	22	46654720	Silent	SNP	A	TCGA-AR-A1AI-01A-11D-A12Q-09	7028559	46654720	4649846	53	39492										
CCNB3	0	genome.wustl.edu	37	chrX	50052008	50052008	+	Frame_Shift_Del	DEL	C	C	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	aactgaggagtcaatccccaCccataagttatcatctttaa							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	X	50052008	50052008	C	-	DEL	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	frame_shift_del	c.839	p.H281fs	0.002	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	88	0	0	17	2	10.53	-	-	-	-	50052008	C	-	50052008	7	5	372	1	0	1	0	1	0	0	0	0	2943	507	18	0	853	0	CCNB3	23	50052008	Frame_Shift_Del	DEL	C	TCGA-AR-A1AI-01A-11D-A12Q-09		50052008	105218552	54	39493										
SLC7A3	0	genome.wustl.edu	37	chrX	70147461	70147461	+	Frame_Shift_Del	DEL	G	G	-													0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	acccgaggcatggggaacatGgagcccaggaggctggagag							TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	X	70147461	70147461	G	-	DEL	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	frame_shift_del	c.1056	p.M353fs	0.997	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	65	0	0	13	2	13.33	-	-	-	-	70147461	G	-	70147461	7	5	372	1	0	1	0	1	0	0	0	0	14787	1335	47	0	827	0	SLC7A3	23	70147461	Frame_Shift_Del	DEL	G	TCGA-AR-A1AI-01A-11D-A12Q-09	20095453	70147461	85123099	55	39494										
DOCK11	0	genome.wustl.edu	37	chrX	117679333	117679333	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	taatcatgtatttgagatagAtgaagactgtgagaaagatg	11	2	1	6			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	X	117679333	117679333	A	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.440	p.D147V	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	322	0	0	43	15	25.86	-	-	-	T	117679333	A	T	117679333	3	4	372	1	0	0	0	0	1	0	0	0	4721	333	12	5	458	5	DOCK11	23	117679333	Missense_Mutation	SNP	A	TCGA-AR-A1AI-01A-11D-A12Q-09	47531872	117679333	37591227	56	39495										
MTCP1NB	0	genome.wustl.edu	37	chrX	154290173	154290173	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.175438596491228	10	0.035292845384275	2.35917188252287	5.11940298507463	1.04477611940298	0.19838056680162	0.775741978420459	6	cctcttctttttcaaatcctGaacagacgacagatcttccc	4	14	4	3			TCGA-AR-A1AI-01A-11D-A12Q-09	TCGA-AR-A1AI-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	842846ea-881c-4d79-88d2-fc1703c58350	e1aef6e6-ad91-48f0-8d2e-52c680cd81f8	X	154290173	154290173	G	T	SNP	MTCP1NB	ENST00000369479	human	ensembl	69_37n	-1	known	nonsense	c.152	p.S51*	1.000	pfam_MTCP1,superfamily_MTCP1	pfam_MTCP1,superfamily_MTCP1	-	no_errors	MTCP1NB	HGNC	ENSG00000182712	408	1	0.24	51	12	19.05	-	-	-	T	154290173	G	T	154290173	4	4	372	1	0	0	0	0	0	1	0	0	9988	1294	45	2	58	2	MTCP1NB	23	154290173	Nonsense_Mutation	SNP	G	TCGA-AR-A1AI-01A-11D-A12Q-09	36610840	154290173	980387	57	39496										
FLG	0	genome.wustl.edu	37	chr1	152282321	152282321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ctgctggtggcgggatccatGtctttctcctggacttgacc	12	12	2	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	1	152282321	152282321	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.5041	p.H1681Y	0.007	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	293	0	0	298	36	10.71	-	-	-	A	152282321	G	A	152282321	3	1	373	1	0	0	0	0	1	0	0	0	5968	1377	48	4	7148	4	FLG	1	152282321	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		152282321	96968300	1	39497										
P4HTM	0	genome.wustl.edu	37	chr3	49038967	49038967	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ccagatcctgcctactgaagAgtatgaagaggcaatgagca	11	9	0	6			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	3	49038967	49038967	A	C	SNP	P4HTM	ENST00000343546	human	ensembl	69_37n	1	known	missense	c.533	p.E178A	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	41	0	0	32	6	15.79	-	-	-	C	49038967	A	C	49038967	3	2	373	1	0	0	0	0	1	0	0	0	11433	304	11	5	543	5	P4HTM	3	49038967	Missense_Mutation	SNP	A	TCGA-AR-A1AJ-01A-21D-A12Q-09		49038967	148983463	2	39498										
WWC2	0	genome.wustl.edu	37	chr4	184182178	184182178	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	tcaactccctcagttccaccGaactctattacagcagtcaa	4	15	4	0			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	4	184182178	184182178	G	A	SNP	WWC2	ENST00000448232	human	ensembl	69_37n	1	known	missense	c.1402	p.E468K	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC2	HGNC	ENSG00000151718	153	0	0	116	26	18.31	-	-	-	A	184182178	G	A	184182178	3	1	373	1	0	0	0	0	1	0	0	0	17509	1059	37	1	1444	1	WWC2	4	184182178	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		184182178	6972098	3	39499										
DNAH5	0	genome.wustl.edu	37	chr5	13735415	13735415	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	gcaatcctcttgcttgtaatCgggctcttgacagacctggt	10	11	2	2			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	5	13735415	13735415	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.11586	p.P3862	0.317	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	142	0	0	154	19	10.92	-	-	-	T	13735415	C	T	13735415	2	4	373	1	0	0	0	0	0	0	0	1	4640	871	31	1		1	DNAH5	5	13735415	Silent	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		13735415	167179845	4	39500										
TCF7	0	genome.wustl.edu	37	chr5	133478723	133478723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	aagagcaggccaagtactatGagctggcccgcaaggagagg	15	9	0	3			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	5	133478723	133478723	G	A	SNP	TCF7	ENST00000321584	human	ensembl	69_37n	1	known	missense	c.958	p.E320K	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7	HGNC	ENSG00000081059	59	0	0	32	4	11.11	-	-	-	A	133478723	G	A	133478723	3	1	373	1	0	0	0	0	1	0	0	0	15791	1291	45	2	988	2	TCF7	5	133478723	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09	119743308	133478723	47436537	5	39501										
HSP90AB1	0	genome.wustl.edu	37	chr6	44219919	44219921	+	In_Frame_Del	DEL	AGA	AGA	-													0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	gctgcctgaggatgaggaggAgaagaagaagatggaagaga							TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	6	44219919	44219921	AGA	-	DEL	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	in_frame_del	c.1646_1648	p.K552in_frame_del	1.000:1.000:1.000	pfam_Hsp90,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	103	0	0	98	13	11.71	-	-	-	-	44219921	AGA	-	44219919	7	5	373	1	0	1	0	1	0	0	0	0	7455	304	11	0	1680	0	HSP90AB1	6	44219919	In_Frame_Del	DEL	AGA	TCGA-AR-A1AJ-01A-21D-A12Q-09		44219919	126895148	6	39502										
SDCCAG3	0	genome.wustl.edu	37	chr9	139301619	139301619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	cgtcgtaacttatctgcagcGtccgcaggtgcctgtctccc	10	15	2	0			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	9	139301619	139301619	G	C	SNP	SDCCAG3	ENST00000357365	human	ensembl	69_37n	-1	known	missense	c.797	p.T266R	1.000	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689	35	0	0	25	4	13.79	-	-	-	C	139301619	G	C	139301619	3	2	373	1	0	0	0	0	1	0	0	0	14046	1145	40	3	534	3	SDCCAG3	9	139301619	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		139301619	1911812	7	39503										
C10orf71	0	genome.wustl.edu	37	chr10	50533921	50533921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ctgccagggtcacccggaggGaggacctgacccacgccctc	13	17	1	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	10	50533921	50533921	G	A	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.3331	p.E1111K	0.987	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	19	0	0	16	5	23.81	-	-	-	A	50533921	G	A	50533921	3	1	373	1	0	0	0	0	1	0	0	0	1624	1175	41	2	3333	2	C10orf71	10	50533921	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		50533921	85000826	8	39504										
PTEN	0	genome.wustl.edu	37	chr10	89624254	89624254	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ccatcatcaaagagatcgttAgcagaaacaaaaggagatat	8	7	2	3			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	10	89624254	89624254	A	C	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.28	p.S10R	1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	316	0	0	249	53	17.55	-	-	-	C	89624254	A	C	89624254	3	2	373	1	0	0	0	0	1	0	0	0	12818	420	15	5	30	5	PTEN	10	89624254	Missense_Mutation	SNP	A	TCGA-AR-A1AJ-01A-21D-A12Q-09	39090333	89624254	45910493	9	39505										
WT1	0	genome.wustl.edu	37	chr11	32450119	32450119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	tgcgccgcatggtgcgagggCgtgtgaccgtagctgggcgt	19	10	0	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	11	32450119	32450119	C	T	SNP	WT1	ENST00000332351	human	ensembl	69_37n	-1	known	silent	c.693	p.T231	0.998	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,prints_Wilms_tumour,pfscan_Znf_C2H2	-	no_errors	WT1	HGNC	ENSG00000184937	67	0	0	34	7	17.07	-	-	-	T	32450119	C	T	32450119	2	4	373	1	0	0	0	0	0	0	0	1	17505	755	27	1		1	WT1	11	32450119	Silent	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		32450119	102556397	10	39506										
HERC2	0	genome.wustl.edu	37	chr15	28493757	28493757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	aaagtttactaataagcaaaCgttgaaaacgcagtaacaaa	6	6	0	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	15	28493757	28493757	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.3176	p.R1059H	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	241	0	0	243	50	17.06	-	-	-	T	28493757	C	T	28493757	3	4	373	1	0	0	0	0	1	0	0	0	7109	536	19	1	11620	1	HERC2	15	28493757	Missense_Mutation	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		28493757	74037635	11	39507										
NOMO1	0	genome.wustl.edu	37	chr16	14951376	14951376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ttacagttaaaacaaaagctGatggctcattccgccttgag	8	9	1	2			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	16	14951376	14951376	G	A	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.1084	p.D362N	0.999	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	498	0	0	384	51	11.72	-	-	-	A	14951376	G	A	14951376	3	1	373	1	0	0	0	0	1	0	0	0	10603	1290	45	2	1126	2	NOMO1	16	14951376	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		14951376	75403377	12	39508										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	176	0	0	127	32	20.13	-	-	-	T	7577120	C	T	7577120	3	4	373	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		7577120	73618090	13	39509										
ARHGEF15	0	genome.wustl.edu	37	chr17	8215645	8215645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	tccccagactcaccttccagCacccccacacctagtccagt	4	21	1	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	17	8215645	8215645	C	G	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.288	p.S96R	0.967	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	142	0	0	97	24	19.83	-	-	-	G	8215645	C	G	8215645	3	3	373	1	0	0	0	0	1	0	0	0	900	709	25	4	290	4	ARHGEF15	17	8215645	Missense_Mutation	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09	638525	8215645	72979565	14	39510										
SARM1	0	genome.wustl.edu	37	chr17	26712099	26712099	+	Frame_Shift_Del	DEL	T	T	-													0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	agctcaagaccttcgccaacTattctacgtgcgaccgcagc							TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	17	26712099	26712099	T	-	DEL	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	frame_shift_del	c.1333	p.Y445fs	1.000	superfamily_SAM/pointed,smart_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	18	0	0	14	4	22.22	-	-	-	-	26712099	T	-	26712099	7	5	373	1	0	1	0	1	0	0	0	0	13929	1522	53	0	1451	0	SARM1	17	26712099	Frame_Shift_Del	DEL	T	TCGA-AR-A1AJ-01A-21D-A12Q-09	18496454	26712099	54483111	15	39511	328	2								
SARM1	0	genome.wustl.edu	37	chr17	26712101	26712101	+	Frame_Shift_Del	DEL	T	T	-													0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ctcaagaccttcgccaactaTtctacgtgcgaccgcagcaa							TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	17	26712101	26712101	T	-	DEL	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	frame_shift_del	c.1335	p.S446fs	0.991	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	18	0	0	15	4	21.05	-	-	-	-	26712101	T	-	26712101	7	5	373	1	0	1	0	1	0	0	0	0	13929	1500	52	0	1453	0	SARM1	17	26712101	Frame_Shift_Del	DEL	T	TCGA-AR-A1AJ-01A-21D-A12Q-09	2	26712101	54483109	16	39512	328	2								
EFCAB3	0	genome.wustl.edu	37	chr17	60464771	60464771	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	agaagctaagtgcttcacaaAtggcaggtaatgagaatcat	10	6	2	2			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	17	60464771	60464771	A	G	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	missense	c.301	p.M101V	0.912	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	165	0	0	169	43	20.28	-	-	-	G	60464771	A	G	60464771	3	3	373	1	0	0	0	0	1	0	0	0	4970	101	4	5	319	5	EFCAB3	17	60464771	Missense_Mutation	SNP	A	TCGA-AR-A1AJ-01A-21D-A12Q-09	33752670	60464771	20730439	17	39513										
MIB1	0	genome.wustl.edu	37	chr18	19371349	19371349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	ttgtaggtggaccttcaatcCtgctgttctcactaaagcga	9	10	2	0			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	18	19371349	19371349	C	T	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.923	p.P308L	1.000	NULL	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	130	0	0	120	21	14.89	-	-	-	T	19371349	C	T	19371349	3	4	373	1	0	0	0	0	1	0	0	0	9637	681	24	4	949	4	MIB1	18	19371349	Missense_Mutation	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		19371349	58705899	18	39514										
KCNQ2	0	genome.wustl.edu	37	chr20	62065186	62065186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	acatgggcacggtgaccgttCgctcgtagtactgccacgtg	13	12	0	1			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	20	62065186	62065186	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.1094	p.R365Q	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	103	0	0	77	20	20.62	-	-	-	T	62065186	C	T	62065186	3	4	373	1	0	0	0	0	1	0	0	0	8137	884	31	1	1628	1	KCNQ2	20	62065186	Missense_Mutation	SNP	C	TCGA-AR-A1AJ-01A-21D-A12Q-09		62065186	960334	19	39515										
PWP2	0	genome.wustl.edu	37	chr21	45545915	45545915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	tttttgaaccgaagaaaaatGacagagtttggcaacctggc	10	7	0	4			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	21	45545915	45545915	G	A	SNP	PWP2	ENST00000291576	human	ensembl	69_37n	1	known	missense	c.1989	p.M663I	1.000	superfamily_Quinonprotein_ADH-like	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945	118	0	0	148	23	13.45	-	-	-	A	45545915	G	A	45545915	3	1	373	1	0	0	0	0	1	0	0	0	12927	1290	45	2	2051	2	PWP2	21	45545915	Missense_Mutation	SNP	G	TCGA-AR-A1AJ-01A-21D-A12Q-09		45545915	2583980	20	39516										
DCAF8L1	0	genome.wustl.edu	37	chrX	27999024	27999024	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.617646838591623	1.58241758241758	0	1.84615384615385	0.1	0.5224358974359	0	gggcagatgtctctgaggaaAtccactcctccaacgcctga	10	13	1	3			TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	X	27999024	27999024	A	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.428	p.I143N	0.760	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	120	0	0	78	9	10.34	-	-	-	T	27999024	A	T	27999024	3	4	373	1	0	0	0	0	1	0	0	0	4309	101	4	5	1378	5	DCAF8L1	23	27999024	Missense_Mutation	SNP	A	TCGA-AR-A1AJ-01A-21D-A12Q-09		27999024	127271536	21	39517										
CTH	0	genome.wustl.edu	37	chr1	70897810	70897810	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ttgattgttacctctgcaatCgaggtctgaagactctacat	8	9	3	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	70897810	70897810	C	T	SNP	CTH	ENST00000370938	human	ensembl	69_37n	1	known	nonsense	c.769	p.R257*	1.000	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	-	no_errors	CTH	HGNC	ENSG00000116761	329	0	0	245	65	20.97	-	-	-	T	70897810	C	T	70897810	4	4	374	1	0	0	0	0	0	1	0	0	4041	876	31	1	799	1	CTH	1	70897810	Nonsense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		70897810	178352811	1	39518										
TRIM45	0	genome.wustl.edu	37	chr1	117663630	117663630	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ttgtgtcagagtctccccctCggatgtccactactgagaag	10	12	2	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	117663630	117663630	C	G	SNP	TRIM45	ENST00000256649	human	ensembl	69_37n	-1	known	missense	c.194	p.R65P	0.999	smart_Znf_RING,pfscan_Znf_RING	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253	66	0	0	49	11	18.33	-	-	-	G	117663630	C	G	117663630	3	3	374	1	0	0	0	0	1	0	0	0	16616	884	31	3	1572	3	TRIM45	1	117663630	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	46765820	117663630	131586991	2	39519										
RAB13	0	genome.wustl.edu	37	chr1	153954902	153954902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tgacttgagcaagatgtcccGggccagggaactaaaagcct	12	10	0	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	153954902	153954902	G	A	SNP	RAB13	ENST00000368575	human	ensembl	69_37n	-1	known	missense	c.499	p.R167W	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545	236	0	0	325	53	14.02	-	-	-	A	153954902	G	A	153954902	3	1	374	1	0	0	0	0	1	0	0	0	12982	1115	39	1	120	1	RAB13	1	153954902	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	36291272	153954902	95295719	3	39520										
CFHR4	0	genome.wustl.edu	37	chr1	196871653	196871653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aggacaatcttattcctattActgtgatcaaaattttgtga	6	6	2	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	196871653	196871653	A	G	SNP	CFHR4	ENST00000367416	human	ensembl	69_37n	1	known	missense	c.161	p.Y54C	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	364	0	0	281	218	43.6	-	-	-	G	196871653	A	G	196871653	3	3	374	1	0	0	0	0	1	0	0	0	3316	391	14	5	170	5	CFHR4	1	196871653	Missense_Mutation	SNP	A	TCGA-AR-A1AK-01A-21D-A12Q-09	42916751	196871653	52378968	4	39521										
SLC30A10	0	genome.wustl.edu	37	chr1	220089147	220089147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tcccgcatggtggaagatttCtcgaatttttgtgctggcat	11	8	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	220089147	220089147	C	G	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.1102	p.E368Q	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	64	0	0	95	17	15.18	-	-	-	G	220089147	C	G	220089147	3	3	374	1	0	0	0	0	1	0	0	0	14643	922	32	2	359	2	SLC30A10	1	220089147	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	23217494	220089147	29161474	5	39522										
MYT1L	0	genome.wustl.edu	37	chr2	1926197	1926197	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tccatggccatcttctccctCatggcctttgctctttccgt	6	16	4	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	1926197	1926197	C	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1344	p.M448I	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	256	0	0	225	57	20.21	-	-	-	A	1926197	C	A	1926197	3	1	374	1	0	0	0	0	1	0	0	0	10179	826	29	2	2274	2	MYT1L	2	1926197	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		1926197	241273176	6	39523										
CCDC138	0	genome.wustl.edu	37	chr2	109473397	109473397	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	actcctgtctaatgttattgAtagtttgctccagatgacgg	9	8	1	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	109473397	109473397	A	T	SNP	CCDC138	ENST00000295124	human	ensembl	69_37n	1	known	missense	c.1664	p.D555V	1.000	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	280	0	0	196	46	19.01	-	-	-	T	109473397	A	T	109473397	3	4	374	1	0	0	0	0	1	0	0	0	2797	333	12	5	1714	5	CCDC138	2	109473397	Missense_Mutation	SNP	A	TCGA-AR-A1AK-01A-21D-A12Q-09	107547200	109473397	133725976	7	39524										
ARHGEF4	0	genome.wustl.edu	37	chr2	131704164	131704164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	actctcccagagtgctccaaCgggactgaaccacatgggct	10	14	1	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	131704164	131704164	C	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	1	known	missense	c.383	p.T128M	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	183	0	0	158	47	22.93	-	-	-	T	131704164	C	T	131704164	3	4	374	1	0	0	0	0	1	0	0	0	910	536	19	1	389	1	ARHGEF4	2	131704164	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	22230767	131704164	111495209	8	39525										
LY75	0	genome.wustl.edu	37	chr2	160714934	160714934	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gcaaaaggcctcaaataaatAaattctctatcatcatagaa	4	8	4	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	160714934	160714934	A	T	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	missense	c.2322	p.F774L	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	300	0	0	218	55	20.15	-	-	-	T	160714934	A	T	160714934	3	4	374	1	0	0	0	0	1	0	0	0	9166	359	13	5	2926	5	LY75	2	160714934	Missense_Mutation	SNP	A	TCGA-AR-A1AK-01A-21D-A12Q-09	29010770	160714934	82484439	9	39526										
FAP	0	genome.wustl.edu	37	chr2	163044844	163044844	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aattaacagcaaatacagacCttacactctgactgcaggga	7	10	1	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	163044844	163044844	C	G	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.1649	p.R550T	0.005	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	160	0	0	128	38	22.89	-	-	-	G	163044844	C	G	163044844	3	3	374	1	0	0	0	0	1	0	0	0	5719	681	24	4	661	4	FAP	2	163044844	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	2329910	163044844	80154529	10	39527										
TTN	0	genome.wustl.edu	37	chr2	179600355	179600355	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ctcaagtgttgctattttatCttcaaaacagatcttataat	4	7	4	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	179600355	179600355	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.11086	p.D3696Y	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	269	0	0	181	55	23.21	-	-	-	A	179600355	C	A	179600355	3	1	374	1	0	0	0	0	1	0	0	0	16832	913	32	2	89963	2	TTN	2	179600355	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	16555511	179600355	63599018	11	39528										
WDFY1	0	genome.wustl.edu	37	chr2	224782704	224782704	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gccagtattgaccactgtctCttttcagccatacccggatg	8	13	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	224782704	224782704	C	T	SNP	WDFY1	ENST00000233055	human	ensembl	69_37n	-1	known	missense	c.161	p.R54K	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449	190	0	0	151	43	22.16	-	-	-	T	224782704	C	T	224782704	3	4	374	1	0	0	0	0	1	0	0	0	17365	913	32	2	1115	2	WDFY1	2	224782704	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	45182349	224782704	18416669	12	39529										
ZNF660	0	genome.wustl.edu	37	chr3	44636310	44636310	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	atacaaagattatggaccatCagagaattcacactggagag	9	7	2	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	44636310	44636310	C	T	SNP	ZNF660	ENST00000322734	human	ensembl	69_37n	1	known	nonsense	c.625	p.Q209*	0.120	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF660	HGNC	ENSG00000144792	280	0	0	184	49	21.03	-	-	-	T	44636310	C	T	44636310	4	4	374	1	0	0	0	0	0	1	0	0	18166	827	29	2	627	2	ZNF660	3	44636310	Nonsense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		44636310	153386120	13	39530										
SLC38A3	0	genome.wustl.edu	37	chr3	50252845	50252845	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ttgacagctgtcgccttgctCtccagctactccatccacct	6	17	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	50252845	50252845	C	T	SNP	SLC38A3	ENST00000420502	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338	95	0	0	72	19	20.88	-	-	-	T	50252845	C	T	50252845	1	4	374	0	1	0	0	0	0	0	0	0	14694	900	32	2		2	SLC38A3	3	50252845	RNA	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	5616535	50252845	147769585	14	39531										
IQCF3	0	genome.wustl.edu	37	chr3	51864469	51864469	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	agggtgaaggcagctgggcaGatccaggcctggtggcgtgg	20	8	0	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	51864469	51864469	G	A	SNP	IQCF3	ENST00000437810	human	ensembl	69_37n	1	known	silent	c.117	p.Q39	0.679	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF3	HGNC	ENSG00000229972	55	0	0	53	15	22.06	-	-	-	A	51864469	G	A	51864469	2	1	374	1	0	0	0	0	0	0	0	1	7863	933	33	2		2	IQCF3	3	51864469	Silent	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	1611624	51864469	146157961	15	39532										
PLA1A	0	genome.wustl.edu	37	chr3	119327774	119327774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	agttgagcctcgagatctccCttttcctcaataaactcctg	6	13	2	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	119327774	119327774	C	T	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	missense	c.433	p.L145F	0.002	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	285	0	0	197	72	26.77	-	-	-	T	119327774	C	T	119327774	3	4	374	1	0	0	0	0	1	0	0	0	12062	681	24	4	443	4	PLA1A	3	119327774	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	67463305	119327774	78694656	16	39533										
PAICS	0	genome.wustl.edu	37	chr4	57314718	57314718	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	caggctatatttgaaatactGgagaaatcctggttgcccca	9	9	0	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	57314718	57314718	G	T	SNP	PAICS	ENST00000264221	human	ensembl	69_37n	1	known	silent	c.528	p.L176	1.000	pfam_SAICAR_synth	pfam_SAICAR_synth,pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050	134	0	0	118	40	25.32	-	-	-	T	57314718	G	T	57314718	2	4	374	1	0	0	0	0	0	0	0	1	11468	1335	47	4		4	PAICS	4	57314718	Silent	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09		57314718	133839558	17	39534										
FHDC1	0	genome.wustl.edu	37	chr4	153889196	153889196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tcaggacaaaatcactaaaaGaaaacatccagcgggatggt	9	8	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	153889196	153889196	G	C	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	missense	c.1165	p.E389Q	0.987	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	207	0	0	166	41	19.71	-	-	-	C	153889196	G	C	153889196	3	2	374	1	0	0	0	0	1	0	0	0	5922	943	33	2	1199	2	FHDC1	4	153889196	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	96574478	153889196	37265080	18	39535										
TRIO	0	genome.wustl.edu	37	chr5	14472760	14472760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tgtgcgggaccttggctatgTggttgaggtgtgtattgcca	16	6	0	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	14472760	14472760	T	C	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.5972	p.V1991A	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	557	0	0	474	125	20.87	-	-	-	C	14472760	T	C	14472760	3	2	374	1	0	0	0	0	1	0	0	0	16648	1696	59	5	6126	5	TRIO	5	14472760	Missense_Mutation	SNP	T	TCGA-AR-A1AK-01A-21D-A12Q-09		14472760	166442500	19	39536										
ZNF131	0	genome.wustl.edu	37	chr5	43175004	43175004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gaggagctgcatgttgaacgGgtcaatcaaatgccagtgga	14	7	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	43175004	43175004	G	A	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	silent	c.1641	p.R547	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	97	0	0	78	43	35.54	-	-	-	A	43175004	G	A	43175004	2	1	374	1	0	0	0	0	0	0	0	1	17817	1219	43	4		4	ZNF131	5	43175004	Silent	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	28702244	43175004	137740256	20	39537										
CTNNA1	0	genome.wustl.edu	37	chr5	138117646	138117646	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	catgcaggcaacataaacttCaagtgggatcctaaaagtct	8	9	2	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	138117646	138117646	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	silent	c.33	p.F11	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	137	0	0	168	43	20.28	-	-	-	T	138117646	C	T	138117646	2	4	374	1	0	0	0	0	0	0	0	1	4044	825	29	2		2	CTNNA1	5	138117646	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	94942642	138117646	42797614	21	39538										
PCDHB7	0	genome.wustl.edu	37	chr5	140552846	140552846	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	agatttccttgaaaatattaGaaagtaccactccaggggcg	9	8	0	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	140552846	140552846	G	C	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.430	p.E144Q	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	82	0	0	61	36	37.11	-	-	-	C	140552846	G	C	140552846	3	2	374	1	0	0	0	0	1	0	0	0	11620	943	33	2	432	2	PCDHB7	5	140552846	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	2435200	140552846	40362414	22	39539										
GCM2	0	genome.wustl.edu	37	chr6	10876743	10876743	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ggggtatccgctgtgccctcGacaaggaatcaactccaaag	11	12	1	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	10876743	10876743	G	A	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	nonsense	c.391	p.R131*	1.000	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	80	0	0	64	19	22.89	-	-	-	A	10876743	G	A	10876743	4	1	374	1	0	0	0	0	0	1	0	0	6348	1066	37	1	1141	1	GCM2	6	10876743	Nonsense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09		10876743	160238324	23	39540										
AIM1	0	genome.wustl.edu	37	chr6	106991455	106991455	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tttacgtcagtggggtctatGaaagttctaagaggcatgta	12	5	3	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	106991455	106991455	G	C	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.3798	p.M1266I	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	540	1	0.18	395	101	20.36	-	-	-	C	106991455	G	C	106991455	3	2	374	1	0	0	0	0	1	0	0	0	430	1290	45	2	3832	2	AIM1	6	106991455	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	96114712	106991455	64123612	24	39541										
LPA	0	genome.wustl.edu	37	chr6	160968970	160968970	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	cccattcccaaacatacagtCtgtagaaaaaaataaaaata	3	9	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	160968970	160968970	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	splice_site	c.5156-1	e32-1	0.965	-	-	-	no_errors	LPA	HGNC	ENSG00000198670	230	0	0	166	61	26.87	-	-	-	T	160968970	C	T	160968970	5	4	374	1	0	0	0	0	0	0	1	0	8969	927	32	2	999	2	LPA	6	160968970	Splice_Site	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	53977515	160968970	10146097	25	39542										
NOD1	0	genome.wustl.edu	37	chr7	30496531	30496531	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	catctcactgtggccctgctCttccatagttaaagtagcaa	7	12	2	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	30496531	30496531	C	G	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.7	p.E3Q	0.446	NULL	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	184	0	0	138	54	28.12	-	-	-	G	30496531	C	G	30496531	3	3	374	1	0	0	0	0	1	0	0	0	10588	922	32	2	2898	2	NOD1	7	30496531	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		30496531	128642132	26	39543										
WNT2	0	genome.wustl.edu	37	chr7	116955280	116955280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aatgcctttgctgtccttggCgcttcccatcttctttggat	8	12	2	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	116955280	116955280	C	T	SNP	WNT2	ENST00000265441	human	ensembl	69_37n	-1	known	missense	c.433	p.A145T	0.064	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	262	0	0	210	59	21.93	-	-	-	T	116955280	C	T	116955280	3	4	374	1	0	0	0	0	1	0	0	0	17483	768	27	1	661	1	WNT2	7	116955280	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	86458749	116955280	42183383	27	39544										
GPR37	0	genome.wustl.edu	37	chr7	124404936	124404936	+	Frame_Shift_Del	DEL	G	G	-													0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aagtttcgtttctggacgcaGgggcgaccccgagggcagaa							TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	124404936	124404936	G	-	DEL	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	frame_shift_del	c.95	p.P32fs	0.006	NULL	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	18	0	0	14	2	12.5	-	-	-	-	124404936	G	-	124404936	7	5	374	1	0	1	0	1	0	0	0	0	6741	1000	35	0	1754	0	GPR37	7	124404936	Frame_Shift_Del	DEL	G	TCGA-AR-A1AK-01A-21D-A12Q-09	7449656	124404936	34733727	28	39545										
TNKS	0	genome.wustl.edu	37	chr8	9619112	9619112	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gggcaccgccacaaattaatCaaaggagtagaaagactctt	9	9	2	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	9619112	9619112	C	A	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	1	known	silent	c.3240	p.I1080	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	276	1	0.36	106	41	27.89	-	-	-	A	9619112	C	A	9619112	2	1	374	1	0	0	0	0	0	0	0	1	16414	816	29	2		2	TNKS	8	9619112	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		9619112	136744910	29	39546										
MTSS1	0	genome.wustl.edu	37	chr8	125565583	125565583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ctcagggctgtgctccccccGctcttctggcccatctggag	11	17	4	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	125565583	125565583	G	A	SNP	MTSS1	ENST00000518547	human	ensembl	69_37n	-1	known	missense	c.1918	p.R640W	0.108	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873	120	0	0	172	31	15.2	-	-	-	A	125565583	G	A	125565583	3	1	374	1	0	0	0	0	1	0	0	0	10034	1086	38	1	353	1	MTSS1	8	125565583	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	115946471	125565583	20798439	30	39547										
C9orf163	0	genome.wustl.edu	37	chr9	139379395	139379395	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	cagaggtggatgctgcctctCaggcgtggggctcgcctttt	15	11	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	9	139379395	139379395	C	T	SNP	C9orf163	ENST00000354376	human	ensembl	69_37n	1	known	silent	c.495	p.L165	0.000	NULL	NULL	-	no_errors	C9orf163	HGNC	ENSG00000196366	60	0	0	48	19	28.36	-	-	-	T	139379395	C	T	139379395	2	4	374	1	0	0	0	0	0	0	0	1	2492	813	29	2		2	C9orf163	9	139379395	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		139379395	1834036	31	39548										
AKR1C1	0	genome.wustl.edu	37	chr10	5010513	5010513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tacttcagccaggtgaggaaGtgatcccaaaagatgaaaat	10	7	1	4			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	5010513	5010513	G	A	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	1	known	missense	c.382	p.V128M	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	208	0	0	162	50	23.58	-	-	-	A	5010513	G	A	5010513	3	1	374	1	0	0	0	0	1	0	0	0	469	1029	36	4	396	4	AKR1C1	10	5010513	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09		5010513	130524234	32	39549										
SEC24C	0	genome.wustl.edu	37	chr10	75528883	75528883	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ttcaagcatgacgatcggctCaatgaagagagcggagctct	12	9	3	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75528883	75528883	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	silent	c.2397	p.L799	0.989	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	112	1	0.88	115	32	21.77	-	-	-	T	75528883	C	T	75528883	2	4	374	1	0	0	0	0	0	0	0	1	14084	813	29	2		2	SEC24C	10	75528883	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	70518370	75528883	60005864	33	39550			1	68		3	3	1916	C		6.640762e-06
SEC24C	0	genome.wustl.edu	37	chr10	75530080	75530080	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ctaccgaaccaccagcagttCgagcctctgaagagcgtcta	9	14	2	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530080	75530080	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	nonsense	c.2905	p.R969*	1.000	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	185	1	0.47	130	48	23.65	-	-	-	T	75530080	C	T	75530080	4	4	374	1	0	0	0	0	0	1	0	0	14084	876	31	1	2983	1	SEC24C	10	75530080	Nonsense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	1197	75530080	60004667	34	39551			1	68		3	3	1916	C		6.640762e-06
SEC24C	0	genome.wustl.edu	37	chr10	75530798	75530798	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gagtctgagtgggggagcatCttatgtggactttctctgtc	14	7	3	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530798	75530798	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	missense	c.3230	p.S1077F	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	195	0	0	145	35	19.44	-	-	-	T	75530798	C	T	75530798	3	4	374	1	0	0	0	0	1	0	0	0	14084	913	32	2	3316	2	SEC24C	10	75530798	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	718	75530798	60003949	35	39552			1	68		3	3	1916	C		6.640762e-06
C10orf12	0	genome.wustl.edu	37	chr10	98744191	98744191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aaagctcagagcccagcaacGtttaatcaagaatgagaaaa	8	8	2	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	98744191	98744191	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.3044	p.R1015H	0.106	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	66	0	0	85	18	17.48	-	-	-	A	98744191	G	A	98744191	3	1	374	1	0	0	0	0	1	0	0	0	1599	1145	40	1	3046	1	C10orf12	10	98744191	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	23213393	98744191	36790556	36	39553										
DNHD1	0	genome.wustl.edu	37	chr11	6519529	6519529	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tcttggcactccatatgtgtCttggacagcaaagaacagcc	9	11	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	6519529	6519529	C	G	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.84	p.V28	0.003	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	34	0	0	21	5	19.23	-	-	-	G	6519529	C	G	6519529	2	3	374	1	0	0	0	0	0	0	0	1	4703	900	32	2		2	DNHD1	11	6519529	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		6519529	128486987	37	39554										
WEE1	0	genome.wustl.edu	37	chr11	9598152	9598152	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gtgtgtgaagaggctggatgGatgcatttatgccattaagc	14	5	0	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	9598152	9598152	G	A	SNP	WEE1	ENST00000450114	human	ensembl	69_37n	1	known	missense	c.965	p.G322E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE1	HGNC	ENSG00000166483	425	0	0	278	64	18.66	-	-	-	A	9598152	G	A	9598152	3	1	374	1	0	0	0	0	1	0	0	0	17441	1174	41	2	979	2	WEE1	11	9598152	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	3078623	9598152	125408364	38	39555										
PC	0	genome.wustl.edu	37	chr11	66617203	66617203	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	catcggggtacatagctgctGagagcacatcttccggcgtc	12	12	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	66617203	66617203	G	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	nonsense	c.3026	p.S1009*	0.996	pfam_Carboxylase_cons_dom,pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	56	0	0	97	15	13.39	-	-	-	T	66617203	G	T	66617203	4	4	374	1	0	0	0	0	0	1	0	0	11570	1294	45	2	522	2	PC	11	66617203	Nonsense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	57019051	66617203	68389313	39	39556										
COQ10A	0	genome.wustl.edu	37	chr12	56663001	56663001	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tgtcatggaacgttacacctCtgcagtttccatggtcaaac	8	11	3	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	56663001	56663001	C	T	SNP	COQ10A	ENST00000308197	human	ensembl	69_37n	1	known	missense	c.440	p.S147F	1.000	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10A	HGNC	ENSG00000135469	127	0	0	146	42	22.34	-	-	-	T	56663001	C	T	56663001	3	4	374	1	0	0	0	0	1	0	0	0	3773	913	32	2	492	2	COQ10A	12	56663001	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		56663001	77188894	40	39557										
TBX3	0	genome.wustl.edu	37	chr12	115118757	115118758	+	Frame_Shift_Ins	INS	-	-	C													0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gactttggacatccactgttINSccccagtagcggggctgtcc							TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	115118757	115118758	-	C	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.584_583	p.E195fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	206	0	0	172	68	28.33	-	-	-	C	115118758	-	C	115118757	7	5	374	1	0	1	1	0	0	0	0	0	15754	1783	62	0	1675	0	TBX3	12	115118757	Frame_Shift_Ins	INS	-	TCGA-AR-A1AK-01A-21D-A12Q-09	58455756	115118757	18733138	41	39558										
SPATA13	0	genome.wustl.edu	37	chr13	24798398	24798398	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ggatgtgttgagcaaagactCctgtgacccaaacgctggca	12	10	0	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	13	24798398	24798398	C	G	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	1	known	missense	c.1331	p.S444C	0.008	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	87	0	0	63	16	20.25	-	-	-	G	24798398	C	G	24798398	3	3	374	1	0	0	0	0	1	0	0	0	15091	855	30	2	1333	2	SPATA13	13	24798398	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		24798398	90371480	42	39559										
LRRC16B	0	genome.wustl.edu	37	chr14	24532005	24532005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tgtcctcccggggccgaggcCggaaccatgaccatgaggag	15	13	0	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	24532005	24532005	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.2656	p.R886W	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	74	0	0	78	24	23.53	-	-	-	T	24532005	C	T	24532005	3	4	374	1	0	0	0	0	1	0	0	0	9038	643	23	1	2770	1	LRRC16B	14	24532005	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		24532005	82817535	43	39560										
SYNE2	0	genome.wustl.edu	37	chr14	64540727	64540727	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	aaataaagaattggtgcagaCtgaaatccaagaaagacatt	8	5	0	5			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	64540727	64540727	C	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.10739	p.T3580N	0.546	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	210	1	0.47	143	28	16.37	-	-	-	A	64540727	C	A	64540727	3	1	374	1	0	0	0	0	1	0	0	0	15538	565	20	4	10945	4	SYNE2	14	64540727	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	40008722	64540727	42808813	44	39561										
UBE3A	0	genome.wustl.edu	37	chr15	25616325	25616325	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gtctccatcattctccgaatCtggtctgcattgtatttaga	7	10	5	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	25616325	25616325	C	G	SNP	UBE3A	ENST00000397954	human	ensembl	69_37n	-1	known	missense	c.1005	p.Q335H	1.000	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	189	0	0	125	19	13.1	-	-	-	G	25616325	C	G	25616325	3	3	374	1	0	0	0	0	1	0	0	0	16976	912	32	2	1654	2	UBE3A	15	25616325	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		25616325	76915067	45	39562										
HCN4	0	genome.wustl.edu	37	chr15	73615867	73615867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ccagctgttggatgtggaagGaggatgaagacggtgtgtcc	17	6	0	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	73615867	73615867	G	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2567	p.S856F	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	38	0	0	32	6	15.38	-	-	-	A	73615867	G	A	73615867	3	1	374	1	0	0	0	0	1	0	0	0	7050	1174	41	2	1048	2	HCN4	15	73615867	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	47999542	73615867	28915525	46	39563										
TMC7	0	genome.wustl.edu	37	chr16	19020581	19020581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ctaccggtccattgcacgtaGgagaacgactgtccattccc	9	14	0	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	19020581	19020581	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.155	p.R52K	0.566	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	172	0	0	157	27	14.67	-	-	-	A	19020581	G	A	19020581	3	1	374	1	0	0	0	0	1	0	0	0	16085	1000	35	4	161	4	TMC7	16	19020581	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09		19020581	71334172	47	39564										
SRCAP	0	genome.wustl.edu	37	chr16	30732773	30732773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	cacagcgcctcattctatctCccgatatgcaggctcgcctg	8	16	3	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	30732773	30732773	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.3517	p.P1173S	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	62	0	0	68	18	20.93	-	-	-	T	30732773	C	T	30732773	3	4	374	1	0	0	0	0	1	0	0	0	15226	855	30	2	3591	2	SRCAP	16	30732773	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	11712192	30732773	59621980	48	39565										
ELAC2	0	genome.wustl.edu	37	chr17	12903496	12903496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ctggggctgggccgtcctgcGcactcctcctgtactcctgc	12	17	0	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	12903496	12903496	G	A	SNP	ELAC2	ENST00000338034	human	ensembl	69_37n	-1	known	missense	c.1400	p.A467V	0.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	30	0	0	39	7	15.22	-	-	-	A	12903496	G	A	12903496	3	1	374	1	0	0	0	0	1	0	0	0	5084	1087	38	1	1120	1	ELAC2	17	12903496	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09		12903496	68291714	49	39566										
DLX3	0	genome.wustl.edu	37	chr17	48070938	48070938	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	atgcgcacctctgcttccggCtcctccttcaccgacactgc	7	19	2	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	48070938	48070938	C	T	SNP	DLX3	ENST00000434704	human	ensembl	69_37n	-1	known	silent	c.342	p.E114	1.000	superfamily_Homeodomain-like	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195	56	0	0	35	31	46.97	-	-	-	T	48070938	C	T	48070938	2	4	374	1	0	0	0	0	0	0	0	1	4608	796	28	4		4	DLX3	17	48070938	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	35167442	48070938	33124272	50	39567										
ST6GALNAC2	0	genome.wustl.edu	37	chr17	74566725	74566725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tcacatagtcgcggatgtctGaggggatgaagatatactgc	13	7	2	3			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	74566725	74566725	G	A	SNP	ST6GALNAC2	ENST00000225276	human	ensembl	69_37n	-1	known	missense	c.695	p.S232L	0.410	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC2	HGNC	ENSG00000070731	41	0	0	78	21	21.21	-	-	-	A	74566725	G	A	74566725	3	1	374	1	0	0	0	0	1	0	0	0	15315	1294	45	2	445	2	ST6GALNAC2	17	74566725	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	26495787	74566725	6628485	51	39568										
COL5A3	0	genome.wustl.edu	37	chr19	10114309	10114309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gttctttttcctgcccttccCcttgcgacctcgccctttct	5	18	2	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	10114309	10114309	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.781	p.G261R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	408	0	0	404	96	19.2	-	-	-	T	10114309	C	T	10114309	3	4	374	1	0	0	0	0	1	0	0	0	3728	623	22	4	4704	4	COL5A3	19	10114309	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		10114309	49014674	52	39569										
CPAMD8	0	genome.wustl.edu	37	chr19	17017901	17017901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gcagactccaggaagtgcctCgctttgtcagtggagcctct	12	12	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	17017901	17017901	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.4061	p.R1354Q	0.625	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	35	0	0	37	5	11.9	-	-	-	T	17017901	C	T	17017901	3	4	374	1	0	0	0	0	1	0	0	0	3825	871	31	1	1821	1	CPAMD8	19	17017901	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	6903592	17017901	42111082	53	39570										
JAK3	0	genome.wustl.edu	37	chr19	17945508	17945508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tgggggccggcagctgctgcCggtcctcataaaattggagt	15	10	1	0			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	17945508	17945508	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.2222	p.R741Q	0.046	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	25	0	0	26	7	21.21	-	-	-	T	17945508	C	T	17945508	3	4	374	1	0	0	0	0	1	0	0	0	7993	652	23	1	1184	1	JAK3	19	17945508	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	927607	17945508	41183475	54	39571										
SUN5	0	genome.wustl.edu	37	chr20	31573550	31573550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	gggagtgctcacatagatgaCgaagtccttgggggcggtgt	17	7	1	2			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	20	31573550	31573550	C	A	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	missense	c.889	p.V297F	0.997	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	104	0	0	190	27	12.44	-	-	-	A	31573550	C	A	31573550	3	1	374	1	0	0	0	0	1	0	0	0	15485	536	19	3	262	3	SUN5	20	31573550	Missense_Mutation	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09		31573550	31451970	55	39572										
XBP1	0	genome.wustl.edu	37	chr22	29191587	29191588	+	Frame_Shift_Ins	INS	-	-	G													0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	cgtccccactgacagagaaaINSgggaggctggtaaggaactg							TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	22	29191587	29191588	-	G	INS	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	frame_shift_ins	c.707_706	p.L236fs	1.000:1.000	NULL	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	110	0	0	87	21	19.44	-	-	-	G	29191588	-	G	29191587	7	5	374	1	0	1	1	0	0	0	0	0	17519	72	3	0	427	0	XBP1	22	29191587	Frame_Shift_Ins	INS	-	TCGA-AR-A1AK-01A-21D-A12Q-09		29191587	22112979	56	39573										
MAOA	0	genome.wustl.edu	37	chrX	43590602	43590602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	ttgaccagtcaagtgacaacAtcatcatagagacgctgaac	8	10	3	4			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43590602	43590602	A	G	SNP	MAOA	ENST00000338702	human	ensembl	69_37n	1	known	missense	c.760	p.I254V	0.885	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221	126	0	0	116	20	14.71	-	-	-	G	43590602	A	G	43590602	3	3	374	1	0	0	0	0	1	0	0	0	9296	217	8	5	786	5	MAOA	23	43590602	Missense_Mutation	SNP	A	TCGA-AR-A1AK-01A-21D-A12Q-09		43590602	111679958	57	39574										
MAOB	0	genome.wustl.edu	37	chrX	43698178	43698178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	tctccaatcctagctccttgGctaatctcaagatacgattc	5	13	2	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43698178	43698178	G	T	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	missense	c.215	p.A72D	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	253	0	0	163	48	22.75	-	-	-	T	43698178	G	T	43698178	3	4	374	1	0	0	0	0	1	0	0	0	9297	1203	42	4	1399	4	MAOB	23	43698178	Missense_Mutation	SNP	G	TCGA-AR-A1AK-01A-21D-A12Q-09	107576	43698178	111572382	58	39575										
HEPH	0	genome.wustl.edu	37	chrX	65427137	65427137	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.305084745762712	18	0.000329627854000746	2.71987230646449	4.44245810055866	2.18156424581006	0.357976754661922	0.967130569224751	11	atggtacattcaggatccctCggccaaggactggaccagaa	11	11	1	1			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	65427137	65427137	C	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	silent	c.2554	p.R852	0.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	281	1	0.35	156	52	25	-	-	-	A	65427137	C	A	65427137	2	1	374	1	0	0	0	0	0	0	0	1	7105	875	31	3		3	HEPH	23	65427137	Silent	SNP	C	TCGA-AR-A1AK-01A-21D-A12Q-09	21728959	65427137	89843423	59	39576										
TSPAN2	0	genome.wustl.edu	37	chr1	115615557	115615557	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	tactctggggacttgtcctcTgatgataactcctttatggc	9	10	2	2			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	115615557	115615557	T	C	SNP	TSPAN2	ENST00000369516	human	ensembl	69_37n	-1	known	silent	c.141	p.S47	0.984	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN2	HGNC	ENSG00000134198	217	0	0	206	48	18.9	-	-	-	C	115615557	T	C	115615557	2	2	375	1	0	0	0	0	0	0	0	1	16740	1567	55	5		5	TSPAN2	1	115615557	Silent	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09		115615557	133635064	1	39577										
C4BPA	0	genome.wustl.edu	37	chr1	207288784	207288784	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	aacgatgcagacacccaggaGagttacgtaatgggcaagta	12	8	0	2			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	207288784	207288784	G	C	SNP	C4BPA	ENST00000367070	human	ensembl	69_37n	1	known	missense	c.352	p.E118Q	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838	416	0	0	362	266	42.29	-	-	-	C	207288784	G	C	207288784	3	2	375	1	0	0	0	0	1	0	0	0	2270	943	33	2	362	2	C4BPA	1	207288784	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09	91673227	207288784	41961837	2	39578										
ARF1	0	genome.wustl.edu	37	chr1	228285614	228285614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gctggggctgcactcactacGccacaggaactggtacattc	11	13	1	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	228285614	228285614	G	A	SNP	ARF1	ENST00000272102	human	ensembl	69_37n	1	known	missense	c.446	p.R149H	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761	97	0	0	121	49	28.49	-	-	-	A	228285614	G	A	228285614	3	1	375	1	0	0	0	0	1	0	0	0	846	1087	38	1	460	1	ARF1	1	228285614	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09	20996830	228285614	20965007	3	39579										
AHCTF1	0	genome.wustl.edu	37	chr1	247063726	247063726	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gctttccctgtccatatataTtcacctgccaggtaaagact	6	12	1	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	247063726	247063726	T	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.1190	p.N397T	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	139	0	0	180	32	15.09	-	-	-	G	247063726	T	G	247063726	3	3	375	1	0	0	0	0	1	0	0	0	408	1493	52	5	5749	5	AHCTF1	1	247063726	Missense_Mutation	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09	18778112	247063726	2186895	4	39580										
MOGS	0	genome.wustl.edu	37	chr2	74689879	74689879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ccagtcttggcagggcttgaTttcctcctgcctgggcactg	12	13	1	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	2	74689879	74689879	T	C	SNP	MOGS	ENST00000233616	human	ensembl	69_37n	-1	known	missense	c.1037	p.N346S	0.001	pfam_Glycoside_hydrolase_63	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	-	no_errors	MOGS	HGNC	ENSG00000115275	134	0	0	84	15	15.15	-	-	-	C	74689879	T	C	74689879	3	2	375	1	0	0	0	0	1	0	0	0	9769	1493	52	5	1480	5	MOGS	2	74689879	Missense_Mutation	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09		74689879	168509494	5	39581										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	388	1	0.26	265	57	17.7	-	-	-	A	178936091	G	A	178936091	3	1	375	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09		178936091	19086339	6	39582										
GIN1	0	genome.wustl.edu	37	chr5	102432415	102432415	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gaccatccttccaccaatttTtcctttgtcttaaaacttca	2	13	2	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	5	102432415	102432415	T	A	SNP	GIN1	ENST00000399004	human	ensembl	69_37n	-1	known	missense	c.1124	p.K375I	1.000	NULL	pfam_Integrase_cat-core,pfam_Znf_H2C2_histone_UAS-bd,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	GIN1	HGNC	ENSG00000145723	586	0	0	453	125	21.63	-	-	-	A	102432415	T	A	102432415	3	1	375	1	0	0	0	0	1	0	0	0	6438	1841	64	5	452	5	GIN1	5	102432415	Missense_Mutation	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09		102432415	78482845	7	39583										
HIVEP1	0	genome.wustl.edu	37	chr6	12163882	12163882	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ggaatacggtcacagaagtgTctggcactacaaaccctgct	10	11	2	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	6	12163882	12163882	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.7345	p.S2449P	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	131	1	0.75	134	36	21.18	-	-	-	C	12163882	T	C	12163882	3	2	375	1	0	0	0	0	1	0	0	0	7237	1667	58	5	7375	5	HIVEP1	6	12163882	Missense_Mutation	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09		12163882	158951185	8	39584										
CASP8AP2	0	genome.wustl.edu	37	chr6	90572907	90572907	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	agaaatgaaaaaagagtaccTacagaacatttgcagaagac	8	6	0	6			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	6	90572907	90572907	T	C	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	171	0	0	124	40	24.39	-	-	-	C	90572907	T	C	90572907	1	2	375	0	1	0	0	0	0	0	0	0	2703	1509	53	5		5	CASP8AP2	6	90572907	RNA	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09	78409025	90572907	80542160	9	39585										
ETV1	0	genome.wustl.edu	37	chr7	13940377	13940377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gctcaccttttgcataattcCtttctcatagtaatagcgga	6	10	2	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	7	13940377	13940377	C	T	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	missense	c.1198	p.G400R	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	395	0	0	312	78	20	-	-	-	T	13940377	C	T	13940377	3	4	375	1	0	0	0	0	1	0	0	0	5314	690	24	4	243	4	ETV1	7	13940377	Missense_Mutation	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09		13940377	145198286	10	39586										
ENG	0	genome.wustl.edu	37	chr9	130580642	130580642	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	agcaggaactcggagacggaTggggacactctgacctgcat	14	10	1	2			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	130580642	130580642	T	C	SNP	ENG	ENST00000373203	human	ensembl	69_37n	-1	known	silent	c.1443	p.P481	0.018	pfam_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	28	0	0	26	10	27.78	-	-	-	C	130580642	T	C	130580642	2	2	375	1	0	0	0	0	0	0	0	1	5154	1451	51	5		5	ENG	9	130580642	Silent	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09		130580642	10632789	11	39587										
TOR1A	0	genome.wustl.edu	37	chr9	132576329	132576329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	aaaactctctcctctttgggGaaaaatgtcatctcctcagc	6	12	5	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	132576329	132576329	G	T	SNP	TOR1A	ENST00000351698	human	ensembl	69_37n	-1	known	missense	c.921	p.F307L	1.000	pirsf_Torsin_subgr	pfam_Torsin,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827	348	0	0	320	78	19.35	-	-	-	T	132576329	G	T	132576329	3	4	375	1	0	0	0	0	1	0	0	0	16467	1165	41	2	81	2	TOR1A	9	132576329	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09	1995687	132576329	8637102	12	39588										
GPSM1	0	genome.wustl.edu	37	chr9	139229081	139229081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	tacttctacctgaaggagcaCggccgggcgctggaatacca	12	12	1	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	139229081	139229081	C	T	SNP	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	silent	c.246	p.H82	0.998	smart_TPR_repeat	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	36	0	0	35	9	20.45	-	-	-	T	139229081	C	T	139229081	2	4	375	1	0	0	0	0	0	0	0	1	6785	535	19	1		1	GPSM1	9	139229081	Silent	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09	6652752	139229081	1984350	13	39589										
CALHM2	0	genome.wustl.edu	37	chr10	105207117	105207117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	cctcatcatccttgttgagcGccacaaagccaaagaagcgg	9	13	2	2			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	10	105207117	105207117	G	A	SNP	CALHM2	ENST00000260743	human	ensembl	69_37n	-1	known	missense	c.764	p.A255V	0.983	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172	30	0	0	28	10	26.32	-	-	-	A	105207117	G	A	105207117	3	1	375	1	0	0	0	0	1	0	0	0	2608	1087	38	1	211	1	CALHM2	10	105207117	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09		105207117	30327630	14	39590										
IFT46	0	genome.wustl.edu	37	chr11	118425295	118425295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	tgtcaggctttccatcaggaCgtgggacctggttaagaaaa	12	8	2	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	11	118425295	118425295	C	T	SNP	IFT46	ENST00000264020	human	ensembl	69_37n	-1	known	missense	c.515	p.R172H	1.000	pfam_Intraflagellar_transp_cmplxB	pfam_Intraflagellar_transp_cmplxB	-	no_errors	IFT46	HGNC	ENSG00000118096	290	0	0	295	64	17.78	-	-	-	T	118425295	C	T	118425295	3	4	375	1	0	0	0	0	1	0	0	0	7614	536	19	1	576	1	IFT46	11	118425295	Missense_Mutation	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09		118425295	16581221	15	39591										
KRAS	0	genome.wustl.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	12	25398285	25398285	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.34	p.G12C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	340	0	0	330	103	23.79	-	-	-	A	25398285	C	A	25398285	3	1	375	1	0	0	0	0	1	0	0	0	8491	594	21	4	672	4	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09		25398285	108453610	16	39592										
MTERFD3	0	genome.wustl.edu	37	chr12	107372349	107372349	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	catttatagagcttttccacTgttcttgtattttctttgct	5	8	2	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	12	107372349	107372349	T	C	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	silent	c.144	p.T48	0.503	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	748	0	0	568	113	16.59	-	-	-	C	107372349	T	C	107372349	2	2	375	1	0	0	0	0	0	0	0	1	9993	1567	55	5		5	MTERFD3	12	107372349	Silent	SNP	T	TCGA-AR-A1AL-01A-21D-A12Q-09	81974064	107372349	26479546	17	39593										
DLL4	0	genome.wustl.edu	37	chr15	41227207	41227207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gcttcaatgggggctcctgcCgggagcgcaaccagggggcc	17	13	1	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	15	41227207	41227207	C	T	SNP	DLL4	ENST00000249749	human	ensembl	69_37n	1	known	missense	c.1132	p.R378W	0.932	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,superfamily_Growth_fac_rcpt,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL4	HGNC	ENSG00000128917	29	0	0	20	6	23.08	-	-	-	T	41227207	C	T	41227207	3	4	375	1	0	0	0	0	1	0	0	0	4604	643	23	1	1162	1	DLL4	15	41227207	Missense_Mutation	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09		41227207	61304185	18	39594										
TNRC6A	0	genome.wustl.edu	37	chr16	24833445	24833445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ggagaataacaaattggcttGttctaaaaaaccttacacct	6	8	1	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	24833445	24833445	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.5350	p.V1784I	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	371	0	0	496	108	17.42	-	-	-	A	24833445	G	A	24833445	3	1	375	1	0	0	0	0	1	0	0	0	16435	1377	48	4	5440	4	TNRC6A	16	24833445	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09		24833445	65521308	19	39595										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53691373	53691373	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	gtattacattacctgataatCtttattaattttgtgttgca	5	5	1	1			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	53691373	53691373	C	G	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	missense	c.1573	p.D525H	1.000	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	297	0	0	216	60	21.74	-	-	-	G	53691373	C	G	53691373	3	3	375	1	0	0	0	0	1	0	0	0	13636	913	32	2	2434	2	RPGRIP1L	16	53691373	Missense_Mutation	SNP	C	TCGA-AR-A1AL-01A-21D-A12Q-09	28857928	53691373	36663380	20	39596										
CDH1	0	genome.wustl.edu	37	chr16	68849608	68849608	+	Frame_Shift_Del	DEL	A	A	-													0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ggactttggcgtgggccaggAaatcacatcctacactgccc							TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	68849608	68849608	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.1511	p.I505fs	0.096	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	206	0	0	121	34	21.52	-	-	-	-	68849608	A	-	68849608	7	5	375	1	0	1	0	1	0	0	0	0	3124	246	9	0	1549	0	CDH1	16	68849608	Frame_Shift_Del	DEL	A	TCGA-AR-A1AL-01A-21D-A12Q-09	15158235	68849608	21505145	21	39597										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325455	55325455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	aatgctgagcccagagcgttGtctcctgcccatgagcacca	10	14	1	3			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	19	55325455	55325455	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	34	0	0	33	4	10.81	-	-	-	A	55325455	G	A	55325455	2	1	375	1	0	0	0	0	0	0	0	1	8371	1368	48	4		4	KIR2DL4	19	55325455	Silent	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09		55325455	3803528	22	39598										
RPRD1B	0	genome.wustl.edu	37	chr20	36694652	36694653	+	Frame_Shift_Del	DEL	AC	AC	-													0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	ttgtcggagaaggagaaaaaActagaggtgagtgcattgaa							TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	20	36694652	36694653	AC	-	DEL	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	frame_shift_del	c.825_826	p.K275fs	0.982:1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	138	0	0	127	29	17.68	-	-	-	-	36694653	AC	-	36694652	7	5	375	1	0	1	0	1	0	0	0	0	13702	40	2	0	847	0	RPRD1B	20	36694652	Frame_Shift_Del	DEL	AC	TCGA-AR-A1AL-01A-21D-A12Q-09		36694652	26330868	23	39599										
TAF1	0	genome.wustl.edu	37	chrX	70602701	70602701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.56723969848664	1.70634920634921	6.82539682539683	0.682539682539683	1	1	0	agggtcttcgaggcacctttGgagggaatattatccaggta	13	7	1	0			TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	X	70602701	70602701	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.1753	p.G585R	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	539	0	0	474	132	21.78	-	-	-	A	70602701	G	A	70602701	3	1	375	1	0	0	0	0	1	0	0	0	15605	1349	47	4	1858	4	TAF1	23	70602701	Missense_Mutation	SNP	G	TCGA-AR-A1AL-01A-21D-A12Q-09		70602701	84667859	24	39600										
MKNK1	0	genome.wustl.edu	37	chr1	47037769	47037769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	aagtcaagggcagcagcaacGtcccgcaccactcggctggc	12	15	1	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	1	47037769	47037769	G	A	SNP	MKNK1	ENST00000371946	human	ensembl	69_37n	-1	known	silent	c.459	p.D153	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277	32	0	0	32	8	20	-	-	-	A	47037769	G	A	47037769	2	1	376	1	0	0	0	0	0	0	0	1	9675	1136	40	1		1	MKNK1	1	47037769	Silent	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		47037769	202212852	1	39601										
ATP1A2	0	genome.wustl.edu	37	chr1	160098479	160098479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	agccaagcgcatggcacggaAgaactgcctggtgaagaacc	13	11	0	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	1	160098479	160098479	A	G	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.1055	p.K352R	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	41	0	0	32	7	17.95	-	-	-	G	160098479	A	G	160098479	3	3	376	1	0	0	0	0	1	0	0	0	1133	72	3	5	1089	5	ATP1A2	1	160098479	Missense_Mutation	SNP	A	TCGA-AR-A1AM-01A-41D-A228-09	113060710	160098479	89152142	2	39602										
ASPM	0	genome.wustl.edu	37	chr1	197091059	197091059	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	gagtacctgatggcgtttgaGatctgtttttagtttatatt	10	4	1	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	1	197091059	197091059	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.3856	p.L1286V	0.004	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	59	0	0	41	34	45.33	-	-	-	C	197091059	G	C	197091059	3	2	376	1	0	0	0	0	1	0	0	0	1060	942	33	2	6629	2	ASPM	1	197091059	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	36992580	197091059	52159562	3	39603										
NAV1	0	genome.wustl.edu	37	chr1	201709164	201709164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	cggggaagatgcttcatctgCccctgcccagatccggaaga	12	13	2	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	1	201709164	201709164	C	T	SNP	NAV1	ENST00000367295	human	ensembl	69_37n	1	novel	missense	c.13	p.P5S	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	44	0	0	21	21	50	-	-	-	T	201709164	C	T	201709164	3	4	376	1	0	0	0	0	1	0	0	0	10255	739	26	4	1253	4	NAV1	1	201709164	Missense_Mutation	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09	4618105	201709164	47541457	4	39604										
FBXO11	0	genome.wustl.edu	37	chr2	48050473	48050473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	aagcctgctatcctatttctGtgtatattgcaactttcaaa	5	9	2	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	2	48050473	48050473	G	T	SNP	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	missense	c.1425	p.H475Q	1.000	superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	25	0	0	17	3	15	-	-	-	T	48050473	G	T	48050473	3	4	376	1	0	0	0	0	1	0	0	0	5773	1368	48	4	1496	4	FBXO11	2	48050473	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		48050473	195148900	5	39605										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	24	0	0	15	4	21.05	-	-	-	C	198266834	T	C	198266834	3	2	376	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-AR-A1AM-01A-41D-A228-09	150216361	198266834	44932539	6	39606										
ABHD10	0	genome.wustl.edu	37	chr3	111710568	111710568	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	ctctcaactatagttaactaGtatcacatgtttagttggta	6	7	2	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	3	111710568	111710568	G	T	SNP	ABHD10	ENST00000273359	human	ensembl	69_37n	1	known	nonstop	c.921	p.*307Y	0.027	NULL	pfam_AB_hydrolase_1,pfam_Peptidase_S9	-	no_errors	ABHD10	HGNC	ENSG00000144827	30	0	0	21	3	12.5	-	-	-	T	111710568	G	T	111710568	4	4	376	1	0	0	0	0	0	0	0	0	74	1024	36	4	939	4	ABHD10	3	111710568	Nonstop_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		111710568	86311862	7	39607										
DCAF4L1	0	genome.wustl.edu	37	chr4	41984628	41984628	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	ctgttccatgactcagcagtGacctctgtgcaaatcctcca	7	14	2	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	4	41984628	41984628	G	A	SNP	DCAF4L1	ENST00000333141	human	ensembl	69_37n	1	known	silent	c.819	p.V273	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308	21	0	0	33	7	17.5	-	-	-	A	41984628	G	A	41984628	2	1	376	1	0	0	0	0	0	0	0	1	4303	1277	45	2		2	DCAF4L1	4	41984628	Silent	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		41984628	149169648	8	39608										
HSP90AB1	0	genome.wustl.edu	37	chr6	44221293	44221293	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	cctgatgagatcccccctctCgagggcgatgaggatgcgtc	13	13	1	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	6	44221293	44221293	C	T	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	silent	c.2133	p.L711	0.645	pfam_Hsp90,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	35	0	0	35	5	12.5	-	-	-	T	44221293	C	T	44221293	2	4	376	1	0	0	0	0	0	0	0	1	7455	871	31	1		1	HSP90AB1	6	44221293	Silent	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09		44221293	126893774	9	39609										
MDN1	0	genome.wustl.edu	37	chr6	90380734	90380734	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	atggtcaggaagaagaggacGaggtctgagtagctggagag	18	4	2	4			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	6	90380734	90380734	G	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.13860	p.L4620	0.776	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	27	0	0	32	4	11.11	-	-	-	T	90380734	G	T	90380734	2	4	376	1	0	0	0	0	0	0	0	1	9486	1045	37	3		3	MDN1	6	90380734	Silent	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	46159441	90380734	80734333	10	39610										
EFHA2	0	genome.wustl.edu	37	chr8	16944534	16944534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	taaaggagatgaagaaaagcGtgcaatgctggtaagaatac	12	4	0	4			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	8	16944534	16944534	G	T	SNP	EFHA2	ENST00000318063	human	ensembl	69_37n	1	known	missense	c.839	p.R280L	0.998	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA2	HGNC	ENSG00000155970	42	0	0	21	4	16	-	-	-	T	16944534	G	T	16944534	3	4	376	1	0	0	0	0	1	0	0	0	4979	1145	40	3	865	3	EFHA2	8	16944534	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		16944534	129419488	11	39611										
DOCK5	0	genome.wustl.edu	37	chr8	25101241	25101241	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	ggagctctccttgcagatcgGtgacacagttcacatcctgg	11	12	2	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	8	25101241	25101241	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.95	p.G32V	0.990	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	45	0	0	32	4	11.11	-	-	-	T	25101241	G	T	25101241	3	4	376	1	0	0	0	0	1	0	0	0	4725	1261	44	4	101	4	DOCK5	8	25101241	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	8156707	25101241	121262781	12	39612										
ARMC1	0	genome.wustl.edu	37	chr8	66539544	66539544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	tcctggacgatggctcttctGtttaacggatctgctgctag	11	10	3	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	8	66539544	66539544	G	T	SNP	ARMC1	ENST00000276569	human	ensembl	69_37n	-1	known	missense	c.90	p.N30K	0.993	pfam_Armadillo,superfamily_ARM-type_fold,pirsf_UCP013899_metal-bd	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_HeavyMe-assoc_HMA,pirsf_UCP013899_metal-bd	-	no_errors	ARMC1	HGNC	ENSG00000104442	43	0	0	19	3	13.64	-	-	-	T	66539544	G	T	66539544	3	4	376	1	0	0	0	0	1	0	0	0	953	1368	48	4	782	4	ARMC1	8	66539544	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	41438303	66539544	79824478	13	39613										
OR1L6	0	genome.wustl.edu	37	chr9	125512365	125512365	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	cttcacaacagtcatagtgcCtaagatgctggtgaattttc	8	9	2	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	9	125512365	125512365	C	G	SNP	OR1L6	ENST00000373684	human	ensembl	69_37n	1	known	missense	c.347	p.P116R	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	73	0	0	46	7	13.21	-	-	-	G	125512365	C	G	125512365	3	3	376	1	0	0	0	0	1	0	0	0	11039	681	24	4	241	4	OR1L6	9	125512365	Missense_Mutation	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09		125512365	15701066	14	39614										
SPTAN1	0	genome.wustl.edu	37	chr9	131344200	131344200	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	ccttcttgtcagtgctttcaAatgacccttatagtaagcca	6	11	3	1			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	9	131344200	131344200	A	G	SNP	SPTAN1	ENST00000472211	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTAN1	HGNC	ENSG00000197694	30	0	0	19	9	32.14	-	-	-	G	131344200	A	G	131344200	1	3	376	0	1	0	0	0	0	0	0	0	15208	29	1	5		5	SPTAN1	9	131344200	RNA	SNP	A	TCGA-AR-A1AM-01A-41D-A228-09	5831835	131344200	9869231	15	39615										
TET1	0	genome.wustl.edu	37	chr10	70451416	70451416	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	aggcctcagagcaaaaagacCaggcagctaatgaaggtcca	11	10	1	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	10	70451416	70451416	C	T	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	nonsense	c.6256	p.Q2086*	0.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	27	0	0	17	3	15	-	-	-	T	70451416	C	T	70451416	4	4	376	1	0	0	0	0	0	1	0	0	15864	595	21	4	6298	4	TET1	10	70451416	Nonsense_Mutation	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09		70451416	65083331	16	39616										
PTEN	0	genome.wustl.edu	37	chr10	89624296	89624296	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	aagaggatggattcgacttaGacttgacctgtatccatttc	9	8	0	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	10	89624296	89624296	G	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.70	p.D24N	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	37	0	0	20	9	31.03	-	-	-	A	89624296	G	A	89624296	3	1	376	1	0	0	0	0	1	0	0	0	12818	942	33	2	72	2	PTEN	10	89624296	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	19172880	89624296	45910451	17	39617										
SPATA13	0	genome.wustl.edu	37	chr13	24868916	24868916	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	gcagcatatgaggccatgaaGaatgtggcctgtctgatcaa	12	8	2	4			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	13	24868916	24868916	G	T	SNP	SPATA13	ENST00000382141	human	ensembl	69_37n	1	known	nonsense	c.2866	p.E956*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA13	HGNC	ENSG00000182957	27	0	0	14	3	17.65	-	-	-	T	24868916	G	T	24868916	4	4	376	1	0	0	0	0	0	1	0	0	15091	933	33	2	3154	2	SPATA13	13	24868916	Nonsense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		24868916	90300962	18	39618										
IGDCC3	0	genome.wustl.edu	37	chr15	65623553	65623553	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	atactccagctccggtgggtCtggagaggcacagggtgggc	17	10	1	1			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	15	65623553	65623553	C	T	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	splice_site	c.1397-1	e9-1	1.000	-	-	-	no_errors	IGDCC3	HGNC	ENSG00000174498	19	0	0	14	8	36.36	-	-	-	T	65623553	C	T	65623553	5	4	376	1	0	0	0	0	0	0	1	0	7622	927	32	2	1072	2	IGDCC3	15	65623553	Splice_Site	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09		65623553	36907839	19	39619										
SLC6A2	0	genome.wustl.edu	37	chr16	55725894	55725894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	gctcctggtccatggcgtcaCgctgcccggagcctccaatg	12	16	1	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	16	55725894	55725894	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	69_37n	1	known	missense	c.848	p.T283M	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546	51	0	0	23	7	23.33	-	-	-	T	55725894	C	T	55725894	3	4	376	1	0	0	0	0	1	0	0	0	14772	536	19	1	957	1	SLC6A2	16	55725894	Missense_Mutation	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09		55725894	34628859	20	39620										
KLHDC4	0	genome.wustl.edu	37	chr16	87734456	87734456	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	gttggagggcggagggaggaGgttggagggtggagggagga	27	1	0	0			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	16	87734456	87734456	G	C	SNP	KLHDC4	ENST00000568346	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	KLHDC4	HGNC	ENSG00000104731	10	0	0	4	5	55.56	-	-	-	C	87734456	G	C	87734456	1	2	376	0	1	0	0	0	0	0	0	0	8411	1015	35	4		4	KLHDC4	16	87734456	RNA	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	32008562	87734456	2620297	21	39621										
MC1R	0	genome.wustl.edu	37	chr16	89981024	89981025	+	RNA	DEL	CC	CC	-													0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	catttgtgtgtgtgtgtgtgCctgtgtgtgggtgcacattt							TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	16	89981024	89981025	CC	-	DEL	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.902:0.902	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	8	0	0	4	2	33.33	-	-	-	-	89981025	CC	-	89981024	6	5	376	0	1	1	0	1	0	0	0	0	9434	754	26	0		0	MC1R	16	89981024	RNA	DEL	CC	TCGA-AR-A1AM-01A-41D-A228-09	2246568	89981024	373729	22	39622										
CECR6	0	genome.wustl.edu	37	chr22	17601391	17601393	+	In_Frame_Del	DEL	CAG	CAG	-													0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	tccagcaggccgccctgcgcCagcagcagcaccacggacag							TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	22	17601391	17601393	CAG	-	DEL	CECR6	ENST00000331437	human	ensembl	69_37n	-1	known	in_frame_del	c.627_625	p.L209in_frame_del	1.000:1.000:0.997	NULL	NULL	-	no_errors	CECR6	HGNC	ENSG00000183307	24	0	0	5	2	28.57	-	-	-	-	17601393	CAG	-	17601391	7	5	376	1	0	1	0	1	0	0	0	0	3237	581	21	0	1113	0	CECR6	22	17601391	In_Frame_Del	DEL	CAG	TCGA-AR-A1AM-01A-41D-A228-09		17601391	33703175	23	39623										
ZCCHC5	0	genome.wustl.edu	37	chrX	77913761	77913761	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	cttggcctctgaggactttcGgagtagatcatactccttgg	11	10	2	2			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	X	77913761	77913761	G	A	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	nonsense	c.157	p.R53*	0.156	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	54	0	0	45	13	22.41	-	-	-	A	77913761	G	A	77913761	4	1	376	1	0	0	0	0	0	1	0	0	17687	1124	39	1	1274	1	ZCCHC5	23	77913761	Nonsense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09		77913761	77356799	24	39624										
MUM1L1	0	genome.wustl.edu	37	chrX	105450668	105450668	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	cagtgataaaaagtatcagaCgaaaagagaggaaagcaagt	11	4	1	3			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	X	105450668	105450668	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	nonsense	c.1243	p.R415*	0.990	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	45	0	0	27	8	22.86	-	-	-	T	105450668	C	T	105450668	4	4	376	1	0	0	0	0	0	1	0	0	10058	528	19	1	1245	1	MUM1L1	23	105450668	Nonsense_Mutation	SNP	C	TCGA-AR-A1AM-01A-41D-A228-09	27536907	105450668	49819892	25	39625										
GUCY2F	0	genome.wustl.edu	37	chrX	108718457	108718457	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	4	0.406819229316526	1.9031339031339	2.06172839506173	1.85555555555556	0.545454545454546	1	0	gcgaattctgtctgcctggtGaatcctctggagggctttcc	12	11	3	1			TCGA-AR-A1AM-01A-41D-A228-09	TCGA-AR-A1AM-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	012e1ff3-7ed3-4dee-ae3d-44a8050d774e	23e838ec-7c27-4869-975d-e3b6f25ace19	X	108718457	108718457	G	T	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.709	p.H237N	0.920	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	92	0	0	66	11	14.29	-	-	-	T	108718457	G	T	108718457	3	4	376	1	0	0	0	0	1	0	0	0	6949	1290	45	2	2689	2	GUCY2F	23	108718457	Missense_Mutation	SNP	G	TCGA-AR-A1AM-01A-41D-A228-09	3267789	108718457	46552103	26	39626										
CCDC24	0	genome.wustl.edu	37	chr1	44458238	44458238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	agtatagccccagggtcctgCactttgccttggaggagccc	12	13	0	0			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	44458238	44458238	C	T	SNP	CCDC24	ENST00000372318	human	ensembl	69_37n	1	known	missense	c.346	p.H116Y	0.998	NULL	NULL	-	no_errors	CCDC24	HGNC	ENSG00000159214	336	0	0	304	120	28.3	-	-	-	T	44458238	C	T	44458238	3	4	377	1	0	0	0	0	1	0	0	0	2825	710	25	4	356	4	CCDC24	1	44458238	Missense_Mutation	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09		44458238	204792383	1	39627										
COL24A1	0	genome.wustl.edu	37	chr1	86591291	86591291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gttggtatttgtctgcttggCgacactgctgtttcacatat	10	8	2	0			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	86591291	86591291	C	T	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.728	p.R243H	0.069	superfamily_ConA-like_lec_gl	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	147	0	0	103	45	30.41	-	-	-	T	86591291	C	T	86591291	3	4	377	1	0	0	0	0	1	0	0	0	3713	768	27	1	4648	1	COL24A1	1	86591291	Missense_Mutation	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09	42133053	86591291	162659330	2	39628										
ATF3	0	genome.wustl.edu	37	chr1	212792849	212792849	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gggaggactccagaagatgaGagaaacctctttatccaaca	10	9	1	4			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	212792849	212792849	G	C	SNP	ATF3	ENST00000341491	human	ensembl	69_37n	1	known	missense	c.498	p.E166D	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772	100	0	0	152	20	11.63	-	-	-	C	212792849	G	C	212792849	3	2	377	1	0	0	0	0	1	0	0	0	1085	933	33	2	572	2	ATF3	1	212792849	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09	126201558	212792849	36457772	3	39629										
HCN1	0	genome.wustl.edu	37	chr5	45262056	45262056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gcaaatcgtggcttttctgcGtctgggtctgtgtttaagac	12	8	3	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	5	45262056	45262056	G	A	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	silent	c.2640	p.D880	0.746	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	120	0	0	103	32	23.7	-	-	-	A	45262056	G	A	45262056	2	1	377	1	0	0	0	0	0	0	0	1	7047	1136	40	1		1	HCN1	5	45262056	Silent	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		45262056	135653204	4	39630										
OR2A1	0	genome.wustl.edu	37	chr7	144015463	144015463	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	acggtgccccagatgctggcGaacctcctgcatccagccaa	10	16	0	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	7	144015463	144015463	G	A	SNP	OR2A1	ENST00000408951	human	ensembl	69_37n	1	known	silent	c.246	p.A82	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2A1	HGNC	ENSG00000221970	96	0	0	112	28	20	-	-	-	A	144015463	G	A	144015463	2	1	377	1	0	0	0	0	0	0	0	1	11047	1045	37	1		1	OR2A1	7	144015463	Silent	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		144015463	15123200	5	39631										
MPDZ	0	genome.wustl.edu	37	chr9	13224396	13224396	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	ggccatatttttgataagctGatcaaattcatcacaagcag	7	8	3	2			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	9	13224396	13224396	G	C	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.370	p.Q124E	1.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	312	0	0	245	102	29.39	-	-	-	C	13224396	G	C	13224396	3	2	377	1	0	0	0	0	1	0	0	0	9794	1299	45	2	5927	2	MPDZ	9	13224396	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		13224396	127989035	6	39632										
PRCP	0	genome.wustl.edu	37	chr11	82561013	82561013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gtggatgctctctgaacaatGtggaccgcttttcctaaaat	9	9	1	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	82561013	82561013	G	A	SNP	PRCP	ENST00000393399	human	ensembl	69_37n	-1	known	missense	c.757	p.H253Y	0.001	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509	126	0	0	111	38	25.5	-	-	-	A	82561013	G	A	82561013	3	1	377	1	0	0	0	0	1	0	0	0	12530	1377	48	4	816	4	PRCP	11	82561013	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		82561013	52445503	7	39633										
POU2F3	0	genome.wustl.edu	37	chr11	120180259	120180259	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	cgaatcaactgccctgtggcCacacccatcaaaccacctgt	6	17	2	0			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	120180259	120180259	C	T	SNP	POU2F3	ENST00000543440	human	ensembl	69_37n	1	known	silent	c.1038	p.A346	0.731	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709	138	0	0	90	42	31.82	-	-	-	T	120180259	C	T	120180259	2	4	377	1	0	0	0	0	0	0	0	1	12346	581	21	4		4	POU2F3	11	120180259	Silent	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09	37619246	120180259	14826257	8	39634										
WWP2	0	genome.wustl.edu	37	chr16	69832690	69832690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gaccaagaagactgggaagcGcattgggagctctgagcttc	14	9	1	3			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	16	69832690	69832690	G	A	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.176	p.R59H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	265	1	0.38	129	67	34.18	-	-	-	A	69832690	G	A	69832690	3	1	377	1	0	0	0	0	1	0	0	0	17513	1087	38	1	182	1	WWP2	16	69832690	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		69832690	20522063	9	39635										
TP53	0	genome.wustl.edu	37	chr17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-													0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	agaatgcaagaagcccagacGgaaaccgtagctgccctggt							TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	17	7579359	7579359	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.328	p.R110fs	0.028	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0	24	9	27.27	-	-	-	-	7579359	G	-	7579359	7	5	377	1	0	1	0	1	0	0	0	0	16477	1116	39	0	974	0	TP53	17	7579359	Frame_Shift_Del	DEL	G	TCGA-AR-A1AN-01A-11D-A12Q-09		7579359	73615851	10	39636										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10221623	10221623	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	cactgtctctccccacagacCtgttccccgaggccaagcag	8	18	1	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	10221623	10221623	C	G	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	missense	c.1204	p.L402V	0.996	NULL	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	41	0	0	31	19	38	-	-	-	G	10221623	C	G	10221623	3	3	377	1	0	0	0	0	1	0	0	0	12362	680	24	4		4	PPAN-P2RY11	19	10221623	Missense_Mutation	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09		10221623	48907360	11	39637										
UNC13A	0	genome.wustl.edu	37	chr19	17760329	17760329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	ggtgcttaccaagtcgctcaCgagtgggataggtttcctct	12	10	2	0			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	17760329	17760329	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.1771	p.V591M	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	282	0	0	209	71	25.36	-	-	-	T	17760329	C	T	17760329	3	4	377	1	0	0	0	0	1	0	0	0	17081	536	19	1	3724	1	UNC13A	19	17760329	Missense_Mutation	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09	7538706	17760329	41368654	12	39638										
RUNX1	0	genome.wustl.edu	37	chr21	36252880	36252880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	cacttcgaccgacaaacctgAggtcattaaatcttgcaacc	6	13	2	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	21	36252880	36252880	A	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.482	p.L161P	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	273	0	0	202	73	26.55	-	-	-	G	36252880	A	G	36252880	3	3	377	1	0	0	0	0	1	0	0	0	13832	304	11	5	1013	5	RUNX1	21	36252880	Missense_Mutation	SNP	A	TCGA-AR-A1AN-01A-11D-A12Q-09		36252880	11877015	13	39639										
MAGEB16	0	genome.wustl.edu	37	chrX	35820757	35820757	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	attatcatcaaagatgatgaGagccacttctctgagatcct	7	9	3	4			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	35820757	35820757	G	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	silent	c.540	p.E180	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	200	0	0	105	50	32.26	-	-	-	A	35820757	G	A	35820757	2	1	377	1	0	0	0	0	0	0	0	1	9245	933	33	2		2	MAGEB16	23	35820757	Silent	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09		35820757	119449803	14	39640										
TSR2	0	genome.wustl.edu	37	chrX	54470525	54470525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	agatggcctcctgcatcactCagagaaaatgcaaggtcaca	9	11	3	2			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	54470525	54470525	C	G	SNP	TSR2	ENST00000375151	human	ensembl	69_37n	1	known	missense	c.349	p.Q117E	0.993	NULL	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526	206	0	0	143	49	25.52	-	-	-	G	54470525	C	G	54470525	3	3	377	1	0	0	0	0	1	0	0	0	16761	827	29	2	363	2	TSR2	23	54470525	Missense_Mutation	SNP	C	TCGA-AR-A1AN-01A-11D-A12Q-09	18649768	54470525	100800035	15	39641										
MAGEE2	0	genome.wustl.edu	37	chrX	75004102	75004102	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	acttcagggcttccatctttGtgatttccctgtgggctcta	9	11	3	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	75004102	75004102	G	C	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.785	p.T262R	0.977	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	115	0	0	89	35	28.23	-	-	-	C	75004102	G	C	75004102	3	2	377	1	0	0	0	0	1	0	0	0	9257	1377	48	4	790	4	MAGEE2	23	75004102	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09	20533577	75004102	80266458	16	39642										
BCORL1	0	genome.wustl.edu	37	chrX	129189983	129189983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	gtcagctgctgacccctgccGagaggcctggaggcttggac	15	13	1	2			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	129189983	129189983	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.5230	p.E1744K	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	67	0	0	53	18	25.35	-	-	-	A	129189983	G	A	129189983	3	1	377	1	0	0	0	0	1	0	0	0	1391	1059	37	1	5280	1	BCORL1	23	129189983	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09	54185881	129189983	26080577	17	39643										
HCFC1	0	genome.wustl.edu	37	chrX	153219074	153219074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.222222222222222	4	0.479717513739179	1.76442307692308	4.23461538461538	0.641608391608392	0.485714285714286	1	0	ttaccggcacagaggggcccGggaccggtgtggactgcgtc	17	12	0	1			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	153219074	153219074	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.4481	p.P1494L	0.996	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	39	0	0	31	12	27.91	-	-	-	A	153219074	G	A	153219074	3	1	377	1	0	0	0	0	1	0	0	0	7042	1116	39	1	1662	1	HCFC1	23	153219074	Missense_Mutation	SNP	G	TCGA-AR-A1AN-01A-11D-A12Q-09	24029091	153219074	2051486	18	39644										
CEP170	0	genome.wustl.edu	37	chr1	243349521	243349521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	ccttctttttctgggattgtCttcatcaaagaatgcaatca	6	9	6	1			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	1	243349521	243349521	C	G	SNP	CEP170	ENST00000336415	human	ensembl	69_37n	-1	novel	missense	c.1017	p.K339N	1.000	NULL	superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP170	HGNC	ENSG00000143702	356	0	0	331	46	12.2	-	-	-	G	243349521	C	G	243349521	3	3	378	1	0	0	0	0	1	0	0	0	3279	928	32	2		2	CEP170	1	243349521	Missense_Mutation	SNP	C	TCGA-AR-A1AO-01A-11D-A12Q-09		243349521	5901100	1	39645										
COL6A5	0	genome.wustl.edu	37	chr3	130150403	130150403	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	aataaaacacgggacatcatCacttccattgtcaatgacct	5	11	3	1			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	3	130150403	130150403	C	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.5343	p.I1781M	0.907	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	140	0	0	103	12	10.43	-	-	-	G	130150403	C	G	130150403	3	3	378	1	0	0	0	0	1	0	0	0	3732	816	29	2	5469	2	COL6A5	3	130150403	Missense_Mutation	SNP	C	TCGA-AR-A1AO-01A-11D-A12Q-09		130150403	67872027	2	39646										
ERP29	0	genome.wustl.edu	37	chr12	112460210	112460210	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	gtggaggcccgccaggccctCttgaagcaggggcaagataa	15	11	1	2			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	12	112460210	112460210	C	G	SNP	ERP29	ENST00000261735	human	ensembl	69_37n	1	known	silent	c.540	p.L180	0.886	pfam_ER_p29_C,superfamily_ER_p29_C,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248	90	0	0	64	8	11.11	-	-	-	G	112460210	C	G	112460210	2	3	378	1	0	0	0	0	0	0	0	1	5279	900	32	2		2	ERP29	12	112460210	Silent	SNP	C	TCGA-AR-A1AO-01A-11D-A12Q-09		112460210	21391685	3	39647										
C14orf102	0	genome.wustl.edu	37	chr14	90754814	90754814	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	cactttcatgtggaatctcaGcaggctcgtgtgcatcagtg	11	10	3	0			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	14	90754814	90754814	G	A	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	silent	c.2905	p.L969	1.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	184	0	0	231	37	13.81	-	-	-	A	90754814	G	A	90754814	2	1	378	1	0	0	0	0	0	0	0	1	1747	962	34	4		4	C14orf102	14	90754814	Silent	SNP	G	TCGA-AR-A1AO-01A-11D-A12Q-09		90754814	16594726	4	39648										
SLC24A1	0	genome.wustl.edu	37	chr15	65918127	65918127	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	cttctacatccttgacctgaTaatgctcatcctcttcttcc	3	15	4	2			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	65918127	65918127	T	G	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	missense	c.1709	p.I570R	0.998	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	644	0	0	807	115	12.47	-	-	-	G	65918127	T	G	65918127	3	3	378	1	0	0	0	0	1	0	0	0	14554	1406	49	5		5	SLC24A1	15	65918127	Missense_Mutation	SNP	T	TCGA-AR-A1AO-01A-11D-A12Q-09		65918127	36613265	5	39649										
CYP1A1	0	genome.wustl.edu	37	chr15	75015349	75015349	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	aggcctttggggacctgaggTcttgaggccctgattaccca	13	11	1	3			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	75015349	75015349	T	C	SNP	CYP1A1	ENST00000379727	human	ensembl	69_37n	-1	known	silent	c.90	p.R30	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465	70	0	0	100	18	15.25	-	-	-	C	75015349	T	C	75015349	2	2	378	1	0	0	0	0	0	0	0	1	4180	1664	58	5		5	CYP1A1	15	75015349	Silent	SNP	T	TCGA-AR-A1AO-01A-11D-A12Q-09	9097222	75015349	27516043	6	39650										
SH2D3A	0	genome.wustl.edu	37	chr19	6754155	6754155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	tccttcggagctggcgccacGtgtgctccaaccgggacacc	12	16	0	0			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	6754155	6754155	G	A	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	missense	c.1292	p.T431M	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	33	0	0	49	6	10.91	-	-	-	A	6754155	G	A	6754155	3	1	378	1	0	0	0	0	1	0	0	0	14321	1145	40	1	450	1	SH2D3A	19	6754155	Missense_Mutation	SNP	G	TCGA-AR-A1AO-01A-11D-A12Q-09		6754155	52374828	7	39651										
GRIN2D	0	genome.wustl.edu	37	chr19	48945508	48945508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.375	3	0.234028692705567	2.94827586206897	5.89655172413793	0	0.1	0.5224358974359	0	acatcgacaacatggcgggcGtcttctacatgctcctggtg	11	12	2	0			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	48945508	48945508	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	missense	c.2542	p.V848I	1.000	pfam_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	116	0	0	124	23	15.65	-	-	-	A	48945508	G	A	48945508	3	1	378	1	0	0	0	0	1	0	0	0	6833	1145	40	1	2584	1	GRIN2D	19	48945508	Missense_Mutation	SNP	G	TCGA-AR-A1AO-01A-11D-A12Q-09	42191353	48945508	10183475	8	39652										
FLG	0	genome.wustl.edu	37	chr1	152285017	152285017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	gtcgagacctttcccctgacCggtcacgtgcggactcttgg	12	14	2	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	1	152285017	152285017	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.2345	p.R782Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	237	0	0	292	241	44.96	-	-	-	T	152285017	C	T	152285017	3	4	379	1	0	0	0	0	1	0	0	0	5968	652	23	1	9844	1	FLG	1	152285017	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		152285017	96965604	1	39653										
SCN7A	0	genome.wustl.edu	37	chr2	167330310	167330310	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	aaataattatataacatactCtaatactggtctccattttg	3	7	2	0			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	2	167330310	167330310	C	G	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	0.963	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	68	0	0	9	7	43.75	-	-	-	G	167330310	C	G	167330310	3	3	379	1	0	0	0	0	1	0	0	0	14011	927	32	2	4694	2	SCN7A	2	167330310	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		167330310	75869063	2	39654										
AQP12A	0	genome.wustl.edu	37	chr2	241633892	241633892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	cttcaaccctgccctggccgCctctgtgacctttgcctgct	8	18	2	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	2	241633892	241633892	C	A	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	1	known	missense	c.650	p.A217D	0.698	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	8	0	0	35	18	33.96	-	-	-	A	241633892	C	A	241633892	3	1	379	1	0	0	0	0	1	0	0	0	826	739	26	4	624	4	AQP12A	2	241633892	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	74303582	241633892	1565481	3	39655										
TGFBR2	0	genome.wustl.edu	37	chr3	30729932	30729932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tgcgggagcacccctgtgtcGaaagcatgaaggacaacgtg	14	10	0	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	30729932	30729932	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	1	known	missense	c.1528	p.E510K	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	105	1	0.94	127	72	36.18	-	-	-	A	30729932	G	A	30729932	3	1	379	1	0	0	0	0	1	0	0	0	15917	1059	37	1	1554	1	TGFBR2	3	30729932	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		30729932	167292498	4	39656										
TMPPE	0	genome.wustl.edu	37	chr3	33135082	33135082	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	atcttgaggttgttcattgaGgcaggcagctgatggatggg	16	5	2	3			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	33135082	33135082	G	C	SNP	TMPPE	ENST00000342462	human	ensembl	69_37n	-1	known	silent	c.606	p.A202	0.000	NULL	pfam_Metallo_PEstase_dom	-	no_errors	TMPPE	HGNC	ENSG00000188167	67	0	0	163	31	15.98	-	-	-	C	33135082	G	C	33135082	2	2	379	1	0	0	0	0	0	0	0	1	16333	987	35	4		4	TMPPE	3	33135082	Silent	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09	2405150	33135082	164887348	5	39657										
GLYCTK	0	genome.wustl.edu	37	chr3	52326415	52326415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	cctccgtgcagccctgccacGttctgtgaagactgtgctgt	11	14	1	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	52326415	52326415	G	A	SNP	GLYCTK	ENST00000436784	human	ensembl	69_37n	1	known	missense	c.845	p.R282H	0.081	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237	47	0	0	79	46	36.8	-	-	-	A	52326415	G	A	52326415	3	1	379	1	0	0	0	0	1	0	0	0	6534	1145	40	1	859	1	GLYCTK	3	52326415	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09	19191333	52326415	145696015	6	39658										
STX19	0	genome.wustl.edu	37	chr3	93733513	93733513	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tgctttagtgatattgatttCtgtaagtaagctttcattaa	7	4	2	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	93733513	93733513	C	T	SNP	STX19	ENST00000315099	human	ensembl	69_37n	-1	known	missense	c.601	p.E201K	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750	147	0	0	158	81	33.89	-	-	-	T	93733513	C	T	93733513	3	4	379	1	0	0	0	0	1	0	0	0	15433	922	32	2	287	2	STX19	3	93733513	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	41407098	93733513	104288917	7	39659										
GPR128	0	genome.wustl.edu	37	chr3	100378672	100378672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	caaagtgctgtggaagaataAccagaacctgacaaggtaag	11	7	0	3			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	100378672	100378672	A	G	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	missense	c.1964	p.N655S	0.894	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	187	0	0	192	123	39.05	-	-	-	G	100378672	A	G	100378672	3	3	379	1	0	0	0	0	1	0	0	0	6691	43	2	5	2018	5	GPR128	3	100378672	Missense_Mutation	SNP	A	TCGA-AR-A1AP-01A-11D-A12Q-09	6645159	100378672	97643758	8	39660										
DZIP3	0	genome.wustl.edu	37	chr3	108335487	108335487	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	aagcagcacttaggaacattCaagctggcaattataccgta	8	9	1	0			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	108335487	108335487	C	G	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.358	p.Q120E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	140	0	0	108	64	37.21	-	-	-	G	108335487	C	G	108335487	3	3	379	1	0	0	0	0	1	0	0	0	4900	827	29	2	372	2	DZIP3	3	108335487	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	7956815	108335487	89686943	9	39661										
MUC20	0	genome.wustl.edu	37	chr3	195346587	195346587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ctgccgagaccctgtccacaGccggcaccacagagtcagct	10	17	1	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	3	195346587	195346587	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	missense	c.889	p.A297T	0.009	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	68	0	0	132	42	24.14	-	-	-	A	195346587	G	A	195346587	3	1	379	1	0	0	0	0	1	0	0	0	10048	986	34	4		4	MUC20	3	195346587	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09	87011100	195346587	2675843	10	39662										
ODZ3	0	genome.wustl.edu	37	chr4	183713590	183713590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	caaccccccggaaagcaacgCctccatcatcacggactaca	6	18	2	0			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	4	183713590	183713590	C	T	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.5765	p.A1922V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	23	0	0	67	32	32.32	-	-	-	T	183713590	C	T	183713590	3	4	379	1	0	0	0	0	1	0	0	0	10909	739	26	4	5863	4	ODZ3	4	183713590	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		183713590	7440686	11	39663										
SNX25	0	genome.wustl.edu	37	chr4	186188240	186188240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	caagagagcctacacctatgCcccctcttacgaggacttca	7	15	2	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	4	186188240	186188240	C	T	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	missense	c.530	p.A177V	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	110	0	0	94	43	31.39	-	-	-	T	186188240	C	T	186188240	3	4	379	1	0	0	0	0	1	0	0	0	14985	739	26	4	544	4	SNX25	4	186188240	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	2474650	186188240	4966036	12	39664										
KIAA1324L	0	genome.wustl.edu	37	chr7	86537023	86537023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tcctgctccagatttagtagGattacacctcattttcacag	6	11	2	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	7	86537023	86537023	G	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.2521	p.P841S	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	194	0	0	176	81	31.52	-	-	-	A	86537023	G	A	86537023	3	1	379	1	0	0	0	0	1	0	0	0	8276	1174	41	2	588	2	KIAA1324L	7	86537023	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		86537023	72601640	13	39665										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	74	0	0	176	50	22.12	-	-	-	-	8111434	CA	-	8111433	8	5	379	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-AR-A1AP-01A-11D-A12Q-09		8111433	127423314	14	39666										
PDZD7	0	genome.wustl.edu	37	chr10	102777873	102777873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tacctttctctatgtccaggCgagggtaagttttggccagg	12	9	1	0			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	10	102777873	102777873	C	T	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	missense	c.1505	p.R502H	0.004	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	115	0	0	93	42	31.11	-	-	-	T	102777873	C	T	102777873	3	4	379	1	0	0	0	0	1	0	0	0	11777	768	27	1	56	1	PDZD7	10	102777873	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	94666440	102777873	32756874	15	39667										
ANKRD13D	0	genome.wustl.edu	37	chr11	67066581	67066581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	agaagatggaaactgttagcGgctacgaggccaaggcagga	15	7	0	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	11	67066581	67066581	G	A	SNP	ANKRD13D	ENST00000511455	human	ensembl	69_37n	1	known	missense	c.784	p.G262S	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932	147	0	0	183	100	35.34	-	-	-	A	67066581	G	A	67066581	3	1	379	1	0	0	0	0	1	0	0	0	644	1116	39	1	810	1	ANKRD13D	11	67066581	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		67066581	67939935	16	39668										
PRB2	0	genome.wustl.edu	37	chr12	11546473	11546473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	cttgtgggggtggtccttgtGgctttcctggaggagatcga	17	7	0	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	12	11546473	11546473	G	A	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.539	p.P180L	0.665	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	338	0	0	355	167	31.87	-	-	-	A	11546473	G	A	11546473	3	1	379	1	0	0	0	0	1	0	0	0	12524	1348	47	4	715	4	PRB2	12	11546473	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		11546473	122305422	17	39669										
COL4A1	0	genome.wustl.edu	37	chr13	110826988	110826988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	acctggatagccaacactccCgggagaccctttaaggcctg	10	14	0	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	13	110826988	110826988	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	missense	c.3307	p.G1103R	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	87	0	0	104	54	34.18	-	-	-	T	110826988	C	T	110826988	3	4	379	1	0	0	0	0	1	0	0	0	3719	652	23	1	1762	1	COL4A1	13	110826988	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		110826988	4342890	18	39670										
MMP14	0	genome.wustl.edu	37	chr14	23314527	23314527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ccaagaacatcaaagtctggGaagggatccctgagtctccc	10	12	3	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	14	23314527	23314527	G	A	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	1	known	missense	c.1369	p.E457K	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	52	0	0	60	29	32.58	-	-	-	A	23314527	G	A	23314527	3	1	379	1	0	0	0	0	1	0	0	0	9724	1175	41	2	1403	2	MMP14	14	23314527	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		23314527	84035013	19	39671										
C14orf37	0	genome.wustl.edu	37	chr14	58605863	58605863	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tgacatcatcattggatcttCagagaccaccagttggggag	11	9	4	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	14	58605863	58605863	C	T	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	0.026	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	202	0	0	134	135	50.19	-	-	-	T	58605863	C	T	58605863	3	4	379	1	0	0	0	0	1	0	0	0	1783	835	29	2	2138	2	C14orf37	14	58605863	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	35291336	58605863	48743677	20	39672										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	179	0	0	104	200	65.79	-	-	-	A	7578263	G	A	7578263	4	1	379	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		7578263	73616947	21	39673										
SLFN11	0	genome.wustl.edu	37	chr17	33689955	33689955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	tgagtgtgaaggttatcgggCgttggggttggcaaaaatga	17	3	0	3			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	17	33689955	33689955	C	T	SNP	SLFN11	ENST00000308377	human	ensembl	69_37n	-1	known	missense	c.872	p.R291H	0.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN11	HGNC	ENSG00000172716	421	0	0	218	243	52.6	-	-	-	T	33689955	C	T	33689955	3	4	379	1	0	0	0	0	1	0	0	0	14822	768	27	1	1849	1	SLFN11	17	33689955	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	26111692	33689955	47505255	22	39674										
DHX58	0	genome.wustl.edu	37	chr17	40257115	40257115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ggatgtccagcccctcctccGccacactcgtggccaccaga	9	19	0	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	17	40257115	40257115	G	A	SNP	DHX58	ENST00000251642	human	ensembl	69_37n	-1	known	missense	c.1322	p.A441V	0.986	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	39	0	0	22	34	60.71	-	-	-	A	40257115	G	A	40257115	3	1	379	1	0	0	0	0	1	0	0	0	4550	1087	38	1	734	1	DHX58	17	40257115	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09	6567160	40257115	40938095	23	39675										
MPO	0	genome.wustl.edu	37	chr17	56355208	56355208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ctgccaggaagcaggggatgCgcgctgagcggttggtgagg	20	8	0	2			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	17	56355208	56355208	C	T	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	missense	c.1280	p.R427H	0.005	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	60	0	0	81	44	34.65	-	-	-	T	56355208	C	T	56355208	3	4	379	1	0	0	0	0	1	0	0	0	9804	768	27	1	1077	1	MPO	17	56355208	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09	16098093	56355208	24840002	24	39676										
CSH1	0	genome.wustl.edu	37	chr17	61972940	61972940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	gaacatactcctgaggaaccGcacgggctccagccacgact	10	15	0	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	17	61972940	61972940	G	A	SNP	CSH1	ENST00000316193	human	ensembl	69_37n	-1	known	missense	c.349	p.R117W	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488	17	0	0	28	19	40.43	-	-	-	A	61972940	G	A	61972940	3	1	379	1	0	0	0	0	1	0	0	0	3972	1086	38	1	561	1	CSH1	17	61972940	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09	5617732	61972940	19222270	25	39677										
MAP4K1	0	genome.wustl.edu	37	chr19	39098654	39098654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ggctgctgctcctgaggtctCgaggaggctgtaggcgagcc	17	11	1	1			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	19	39098654	39098654	C	T	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	missense	c.1085	p.R362Q	0.001	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	70	0	0	80	48	37.21	-	-	-	T	39098654	C	T	39098654	3	4	379	1	0	0	0	0	1	0	0	0	9330	884	31	1	1550	1	MAP4K1	19	39098654	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		39098654	20030329	26	39678										
C20orf26	0	genome.wustl.edu	37	chr20	20150064	20150064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	ctttcaacacctgcaccctcGagcaggacctctacgtcttc	6	17	3	0			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	20	20150064	20150064	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.1345	p.E449K	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	150	0	0	131	114	46.53	-	-	-	A	20150064	G	A	20150064	3	1	379	1	0	0	0	0	1	0	0	0	2126	1059	37	1	1391	1	C20orf26	20	20150064	Missense_Mutation	SNP	G	TCGA-AR-A1AP-01A-11D-A12Q-09		20150064	42875456	27	39679										
TOX2	0	genome.wustl.edu	37	chr20	42683009	42683009	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	cccgaagaagaagaaaaagaAggaccccaatgagccgcaga	11	10	0	6			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	20	42683009	42683009	A	T	SNP	TOX2	ENST00000341197	human	ensembl	69_37n	1	known	missense	c.722	p.K241M	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX2	HGNC	ENSG00000124191	49	0	0	101	37	26.62	-	-	-	T	42683009	A	T	42683009	3	4	379	1	0	0	0	0	1	0	0	0	16474	72	3	5	870	5	TOX2	20	42683009	Missense_Mutation	SNP	A	TCGA-AR-A1AP-01A-11D-A12Q-09	22532945	42683009	20342511	28	39680										
SAT1	0	genome.wustl.edu	37	chrX	23803899	23803899	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137931034482759	4	0.726156158600314	1.28125	5.125	0.732142857142857	1	1	0	aaagaagaggtgcttctgatCtgtccagtgaagagggttgg	15	5	2	5			TCGA-AR-A1AP-01A-11D-A12Q-09	TCGA-AR-A1AP-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	597e37c9-f0c9-4839-800e-6e9519ec3add	db345a86-cbeb-4514-b490-b730372b90dc	X	23803899	23803899	C	A	SNP	SAT1	ENST00000379270	human	ensembl	69_37n	1	known	missense	c.442	p.L148M	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SAT1	HGNC	ENSG00000130066	125	0	0	93	20	17.7	-	-	-	A	23803899	C	A	23803899	3	1	379	1	0	0	0	0	1	0	0	0	13938	912	32	2	464	2	SAT1	23	23803899	Missense_Mutation	SNP	C	TCGA-AR-A1AP-01A-11D-A12Q-09		23803899	131466661	29	39681										
IPO13	0	genome.wustl.edu	37	chr1	44413299	44413299	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	cggcgggaggagcagccgggGgctgcaggggctggagcagc	23	10	0	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	44413299	44413299	G	T	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	silent	c.27	p.G9	1.000	NULL	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	55	0	0	44	9	16.98	-	-	-	T	44413299	G	T	44413299	2	4	380	1	0	0	0	0	0	0	0	1	7848	1219	43	4		4	IPO13	1	44413299	Silent	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		44413299	204837322	1	39682										
LRRC41	0	genome.wustl.edu	37	chr1	46746855	46746855	+	Frame_Shift_Del	DEL	A	A	-													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	cctgcattccctggcacaccAgggttgtcccgctggcttgg							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	46746855	46746855	A	-	DEL	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	frame_shift_del	c.1698	p.G567fs	0.983	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	96	0	0	83	19	17.43	-	-	-	-	46746855	A	-	46746855	7	5	380	1	0	1	0	1	0	0	0	0	9065	175	7	0	764	0	LRRC41	1	46746855	Frame_Shift_Del	DEL	A	TCGA-AR-A1AQ-01A-11D-A12Q-09	2333556	46746855	202503766	2	39683										
SPTA1	0	genome.wustl.edu	37	chr1	158615165	158615165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gagcctctgcctccatgtcaGcacggtgctcctgtgggaaa	12	13	2	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	158615165	158615165	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.4007	p.A1336V	0.950	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	166	0	0	110	50	31.25	-	-	-	A	158615165	G	A	158615165	3	1	380	1	0	0	0	0	1	0	0	0	15207	971	34	4	3348	4	SPTA1	1	158615165	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	111868310	158615165	90635456	3	39684										
PLD5	0	genome.wustl.edu	37	chr1	242287770	242287770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	agaaagggaaaacaactcacCgatacaaatgcttgagattt	8	7	1	2			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	242287770	242287770	C	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.933	p.S311	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	285	1	0.35	187	52	21.76	-	-	-	T	242287770	C	T	242287770	2	4	380	1	0	0	0	0	0	0	0	1	12123	666	23	1		1	PLD5	1	242287770	Silent	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09	83672605	242287770	6962851	4	39685										
RNF144A	0	genome.wustl.edu	37	chr2	7179763	7179763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ttgtttctttcttccaggttGtgggcatttttgcaggattt	10	6	2	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	7179763	7179763	G	A	SNP	RNF144A	ENST00000320892	human	ensembl	69_37n	1	known	missense	c.751	p.V251M	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692	426	0	0	246	185	42.92	-	-	-	A	7179763	G	A	7179763	3	1	380	1	0	0	0	0	1	0	0	0	13531	1377	48	4	777	4	RNF144A	2	7179763	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		7179763	236019610	5	39686										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452831	43452832	+	Frame_Shift_Ins	INS	-	-	C													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ggggcggcggccacaggcgtINSccccaccgccttcttgtcca							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	43452831	43452832	-	C	INS	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.112_111	p.T37fs	1.000:0.993	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	17	0	0	12	3	20	-	-	-	C	43452832	-	C	43452831	7	5	380	1	0	1	1	0	0	0	0	0	17743	1667	58	0	1376	0	ZFP36L2	2	43452831	Frame_Shift_Ins	INS	-	TCGA-AR-A1AQ-01A-11D-A12Q-09	36273068	43452831	199746542	6	39687										
GALNT3	0	genome.wustl.edu	37	chr2	166618455	166618455	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	agcgtttcagctgttgcgacTgttgctcctagcaaccgagc	11	12	1	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	166618455	166618455	T	C	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	silent	c.798	p.T266	0.973	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	341	0	0	152	119	43.91	-	-	-	C	166618455	T	C	166618455	2	2	380	1	0	0	0	0	0	0	0	1	6264	1567	55	5		5	GALNT3	2	166618455	Silent	SNP	T	TCGA-AR-A1AQ-01A-11D-A12Q-09	123165624	166618455	76580918	7	39688										
HOXD11	0	genome.wustl.edu	37	chr2	176973668	176973668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gtcccggaaaaagcgctgtcCctataccaagtaccagatcc	8	14	0	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	176973668	176973668	C	A	SNP	HOXD11	ENST00000249504	human	ensembl	69_37n	1	known	missense	c.815	p.P272H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713	126	0	0	105	20	16	-	-	-	A	176973668	C	A	176973668	3	1	380	1	0	0	0	0	1	0	0	0	7371	623	22	4	821	4	HOXD11	2	176973668	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09	10355213	176973668	66225705	8	39689										
DNAH7	0	genome.wustl.edu	37	chr2	196749476	196749476	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	aatcttattaaatttcaatcGatcatcatctgtacaagaag	4	7	5	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	196749476	196749476	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.5596	p.R1866*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	188	0	0	125	102	44.93	-	-	-	A	196749476	G	A	196749476	4	1	380	1	0	0	0	0	0	1	0	0	4641	1066	37	1	6602	1	DNAH7	2	196749476	Nonsense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	19775808	196749476	46449897	9	39690										
FNIP1	0	genome.wustl.edu	37	chr5	131046309	131046309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	tcctgatcaggcggagcggaCcctgctcagagaatgcccgc	13	14	2	2			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	5	131046309	131046309	C	A	SNP	FNIP1	ENST00000510461	human	ensembl	69_37n	-1	known	missense	c.668	p.G223V	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	86	0	0	48	24	33.33	-	-	-	A	131046309	C	A	131046309	3	1	380	1	0	0	0	0	1	0	0	0	6021	507	18	4	2880	4	FNIP1	5	131046309	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		131046309	49868951	10	39691										
SPDEF	0	genome.wustl.edu	37	chr6	34506131	34506131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gcccttcttgtaatactggcGgatggagcggctcagcttgt	13	10	2	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	34506131	34506131	G	A	SNP	SPDEF	ENST00000374037	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPDEF	HGNC	ENSG00000124664	291	1	0.34	146	100	40.49	-	-	-	A	34506131	G	A	34506131	3	1	380	1	0	0	0	0	1	0	0	0	15117	1116	39	1	83	1	SPDEF	6	34506131	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		34506131	136608936	11	39692										
APOBEC2	0	genome.wustl.edu	37	chr6	41029366	41029367	+	Frame_Shift_Ins	INS	-	-	CC													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	acccttagcaagaccaagaaINScctgcgtctgctcattctgg							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	41029366	41029367	-	CC	INS	APOBEC2	ENST00000244669	human	ensembl	69_37n	1	known	frame_shift_ins	c.431_432	p.L145fs	1.000:1.000	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC2	HGNC	ENSG00000124701	103	0	0	152	20	11.63	-	-	-	CC	41029367	-	CC	41029366	7	5	380	1	0	1	1	0	0	0	0	0	790	43	2	0	437	0	APOBEC2	6	41029366	Frame_Shift_Ins	INS	-	TCGA-AR-A1AQ-01A-11D-A12Q-09	6523235	41029366	130085701	12	39693										
CNPY3	0	genome.wustl.edu	37	chr6	42906359	42906359	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gagacacagctgccctgggaGggaagaagtccaagaagaag	15	8	0	4			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	42906359	42906359	G	C	SNP	CNPY3	ENST00000372836	human	ensembl	69_37n	1	known	missense	c.667	p.G223R	0.997	NULL	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	217	0	0	299	49	14.04	-	-	-	C	42906359	G	C	42906359	3	2	380	1	0	0	0	0	1	0	0	0	3659	1000	35	4	689	4	CNPY3	6	42906359	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	1876993	42906359	128208708	13	39694										
SEMA3A	0	genome.wustl.edu	37	chr7	83823815	83823815	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gtaggataatttcagccttgGcacattgttcttcccattct	7	10	3	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	7	83823815	83823815	G	C	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.88	p.P30A	1.000	superfamily_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	385	1	0.26	316	94	22.93	-	-	-	C	83823815	G	C	83823815	3	2	380	1	0	0	0	0	1	0	0	0	14112	1203	42	4	2295	4	SEMA3A	7	83823815	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		83823815	75314848	14	39695										
PARD3	0	genome.wustl.edu	37	chr10	34400454	34400454	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gagtagttctgctcccaagaGtcctgggagaccgagctggc	14	11	1	2			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	10	34400454	34400454	G	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.3714	p.D1238E	0.952	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	97	0	0	169	25	12.89	-	-	-	C	34400454	G	C	34400454	3	2	380	1	0	0	0	0	1	0	0	0	11516	1020	36	4	360	4	PARD3	10	34400454	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		34400454	101134293	15	39696										
STIM1	0	genome.wustl.edu	37	chr11	4091418	4091418	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ccgagctgagcagagtctgcAtgaccttcaggaaaggtaag	13	9	2	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	4091418	4091418	A	G	SNP	STIM1	ENST00000300737	human	ensembl	69_37n	1	known	missense	c.776	p.H259R	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323	229	0	0	193	58	23.11	-	-	-	G	4091418	A	G	4091418	3	3	380	1	0	0	0	0	1	0	0	0	15374	217	8	5	798	5	STIM1	11	4091418	Missense_Mutation	SNP	A	TCGA-AR-A1AQ-01A-11D-A12Q-09		4091418	130915098	16	39697										
ABCC8	0	genome.wustl.edu	37	chr11	17498260	17498260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	cacaaagcagccgttgttgaGgaccccctggtccacccggt	11	15	0	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	17498260	17498260	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.64	p.L22F	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	30	0	0	27	6	18.18	-	-	-	A	17498260	G	A	17498260	3	1	380	1	0	0	0	0	1	0	0	0	58	1000	35	4	4837	4	ABCC8	11	17498260	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	13406842	17498260	117508256	17	39698										
AASDHPPT	0	genome.wustl.edu	37	chr11	105948464	105948464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ttccctgccaaacggttctgCttggtgccatccatggaggg	12	12	1	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	105948464	105948464	C	G	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	1	known	missense	c.27	p.C9W	0.047	NULL	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	118	0	0	81	26	24.3	-	-	-	G	105948464	C	G	105948464	3	3	380	1	0	0	0	0	1	0	0	0	23	811	28	4	29	4	AASDHPPT	11	105948464	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09	88450204	105948464	29058052	18	39699										
ATN1	0	genome.wustl.edu	37	chr12	7048007	7048007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ctagtgagctggaacccctaCatggggtccctgggccgggc	15	13	0	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	12	7048007	7048007	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.2881	p.H961Y	0.614	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	29	0	0	22	8	26.67	-	-	-	T	7048007	C	T	7048007	3	4	380	1	0	0	0	0	1	0	0	0	1115	478	17	4	2903	4	ATN1	12	7048007	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		7048007	126803888	19	39700										
FLT1	0	genome.wustl.edu	37	chr13	28896410	28896410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	aagactgacctttctggaagAcaggaactccatgcctctgg	10	11	2	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	28896410	28896410	A	G	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.3040	p.S1014P	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	209	0	0	75	96	56.14	-	-	-	G	28896410	A	G	28896410	3	3	380	1	0	0	0	0	1	0	0	0	5987	275	10	5	1012	5	FLT1	13	28896410	Missense_Mutation	SNP	A	TCGA-AR-A1AQ-01A-11D-A12Q-09		28896410	86273468	20	39701										
RB1	0	genome.wustl.edu	37	chr13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ggaagatgatctggtgatttCatttcagttaatgctatgtg	11	4	3	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	48934189	48934189	C	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.644	p.S215*	1.000	pfam_DUF3452_retinoblatoma-assoc	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	337	0	0	110	96	46.6	-	-	-	G	48934189	C	G	48934189	4	3	380	1	0	0	0	0	0	1	0	0	13181	838	29	2	670	2	RB1	13	48934189	Nonsense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09	20037779	48934189	66235689	21	39702										
ATG2B	0	genome.wustl.edu	37	chr14	96779679	96779679	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	aacttacctataatcaagtgCacagctccaaagatgaacat	5	10	1	2			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	14	96779679	96779679	C	A	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.3736	p.A1246S	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	163	0	0	61	31	33.7	-	-	-	A	96779679	C	A	96779679	3	1	380	1	0	0	0	0	1	0	0	0	1098	710	25	4	2576	4	ATG2B	14	96779679	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		96779679	10569861	22	39703										
CCPG1	0	genome.wustl.edu	37	chr15	55681620	55681620	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ctgtcactggaattttcagaCatctttcaggtctacaaata	6	9	5	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	15	55681620	55681620	C	G	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	203	0	0	81	24	22.86	-	-	-	G	55681620	C	G	55681620	3	3	380	1	0	0	0	0	1	0	0	0	2967	478	17	4	2298	4	CCPG1	15	55681620	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		55681620	46849772	23	39704										
CORO7	0	genome.wustl.edu	37	chr16	4458194	4458194	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ccactcaccgtcctgtcagcCgagcctgtggccaggaggaa	12	15	2	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	4458194	4458194	C	A	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	silent	c.291	p.S97	0.226	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	114	0	0	130	26	14.53	-	-	-	A	4458194	C	A	4458194	2	1	380	1	0	0	0	0	0	0	0	1	3789	639	23	3		3	CORO7	16	4458194	Silent	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		4458194	85896559	24	39705										
WWP2	0	genome.wustl.edu	37	chr16	69972999	69972999	+	Frame_Shift_Del	DEL	C	C	-													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	tcaccggtacctgccgcctgCccgtcgggggatttgccgaa							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	69972999	69972999	C	-	DEL	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	frame_shift_del	c.2413	p.V806fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	225	0	0	109	56	33.33	-	-	-	-	69972999	C	-	69972999	7	5	380	1	0	1	0	1	0	0	0	0	17513	739	26	0	2499	0	WWP2	16	69972999	Frame_Shift_Del	DEL	C	TCGA-AR-A1AQ-01A-11D-A12Q-09	65514805	69972999	20381754	25	39706										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Frame_Shift_Del	DEL	G	G	-													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	7574003	7574003	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.1024	p.R342fs	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	108	0	0	53	19	26.03	-	-	-	-	7574003	G	-	7574003	7	5	380	1	0	1	0	1	0	0	0	0	16477	1124	39	0	165	0	TP53	17	7574003	Frame_Shift_Del	DEL	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		7574003	73621207	26	39707										
FLII	0	genome.wustl.edu	37	chr17	18155040	18155040	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	caacatctgacatgcccttcAgcacctgcttggcctggtca	8	15	3	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	18155040	18155040	A	C	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.1337	p.L446R	1.000	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	189	1	0.53	111	49	30.63	-	-	-	C	18155040	A	C	18155040	3	2	380	1	0	0	0	0	1	0	0	0	5971	188	7	5	2548	5	FLII	17	18155040	Missense_Mutation	SNP	A	TCGA-AR-A1AQ-01A-11D-A12Q-09	10581037	18155040	63040170	27	39708										
MYO18A	0	genome.wustl.edu	37	chr17	27401792	27401792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	caaccactcccctgggctatGcgttagtctccgtcagcttg	9	15	2	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	27401792	27401792	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.6161	p.A2054V	0.687	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	271	0	0	144	71	33.02	-	-	-	A	27401792	G	A	27401792	3	1	380	1	0	0	0	0	1	0	0	0	10137	1319	46	4	7	4	MYO18A	17	27401792	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	9246752	27401792	53793418	28	39709										
DCC	0	genome.wustl.edu	37	chr18	50985621	50985621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ggaaacgggccacccacagtGctggcaaaaggaagggcagc	15	11	0	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	18	50985621	50985621	G	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.3412	p.A1138T	0.998	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	103	0	0	76	18	19.15	-	-	-	A	50985621	G	A	50985621	3	1	380	1	0	0	0	0	1	0	0	0	4313	1319	46	4	3506	4	DCC	18	50985621	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		50985621	27091627	29	39710										
PIP5K1C	0	genome.wustl.edu	37	chr19	3643289	3643289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	agggggaccgctcaggaatgGagagggatgtggatgacaga	19	5	1	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	3643289	3643289	G	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	69_37n	-1	known	missense	c.1601	p.S534F	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	237	0	0	114	51	30.91	-	-	-	A	3643289	G	A	3643289	3	1	380	1	0	0	0	0	1	0	0	0	12015	1174	41	2	429	2	PIP5K1C	19	3643289	Missense_Mutation	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09		3643289	55485694	30	39711										
MUC16	0	genome.wustl.edu	37	chr19	9074465	9074465	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ccactagacacatgggtaatGacagtgcttgtctctgtagc	10	10	1	2			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	9074465	9074465	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.12981	p.V4327	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	273	0	0	222	80	26.49	-	-	-	A	9074465	G	A	9074465	2	1	380	1	0	0	0	0	0	0	0	1	10045	1277	45	2		2	MUC16	19	9074465	Silent	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	5431176	9074465	50054518	31	39712										
S1PR2	0	genome.wustl.edu	37	chr19	10334727	10334727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	ctgcgccacgtgtagatgacGgggttgagcagggaattcag	16	8	1	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	10334727	10334727	G	A	SNP	S1PR2	ENST00000590320	human	ensembl	69_37n	-1	known	silent	c.855	p.P285	0.152	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_EDG5_rcpt,prints_7TM_GPCR_Rhodpsn,prints_S1P_rcpt,prints_Melcrt_ACTH_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	S1PR2	Clone_based_vega_gene	ENSG00000267534	105	0	0	84	25	22.94	-	-	-	A	10334727	G	A	10334727	2	1	380	1	0	0	0	0	0	0	0	1	13880	1103	39	1		1	S1PR2	19	10334727	Silent	SNP	G	TCGA-AR-A1AQ-01A-11D-A12Q-09	1260262	10334727	48794256	32	39713										
NWD1	0	genome.wustl.edu	37	chr19	16918910	16918910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	cctgctgtgtctctgggaccTgcaggcacgcaagtggaaat	13	11	1	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	16918910	16918910	T	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.4250	p.L1417P	0.997	pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	85	0	0	125	17	11.97	-	-	-	C	16918910	T	C	16918910	3	2	380	1	0	0	0	0	1	0	0	0	10854	1580	55	5	3899	5	NWD1	19	16918910	Missense_Mutation	SNP	T	TCGA-AR-A1AQ-01A-11D-A12Q-09	6584183	16918910	42210073	33	39714										
PREX1	0	genome.wustl.edu	37	chr20	47296244	47296244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	tgtaggtgccatcgtcgtagCggaagcgatacatcacctgc	12	11	1	0			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	20	47296244	47296244	C	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.1484	p.R495H	1.000	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	135	0	0	144	35	19.44	-	-	-	T	47296244	C	T	47296244	3	4	380	1	0	0	0	0	1	0	0	0	12557	768	27	1	3611	1	PREX1	20	47296244	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		47296244	15729276	34	39715										
BACH1	0	genome.wustl.edu	37	chr21	30699407	30699407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gcagttatcacctgctgtggCcaaagatggctcagaacaga	11	10	2	3			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	21	30699407	30699407	C	T	SNP	BACH1	ENST00000286800	human	ensembl	69_37n	1	known	missense	c.1262	p.A421V	0.951	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273	114	0	0	123	41	25	-	-	-	T	30699407	C	T	30699407	3	4	380	1	0	0	0	0	1	0	0	0	1287	739	26	4	1268	4	BACH1	21	30699407	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		30699407	17430488	35	39716										
GAB4	0	genome.wustl.edu	37	chr22	17468927	17468927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	gcagggatgggccaggtgggCggcacacagtgagacaccgg	19	10	0	1			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	22	17468927	17468927	C	T	SNP	GAB4	ENST00000465611	human	ensembl	69_37n	-1	known	missense	c.443	p.R148H	0.533	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GAB4	HGNC	ENSG00000215568	120	0	0	64	19	22.89	-	-	-	T	17468927	C	T	17468927	3	4	380	1	0	0	0	0	1	0	0	0	6200	755	27	1	1147	1	GAB4	22	17468927	Missense_Mutation	SNP	C	TCGA-AR-A1AQ-01A-11D-A12Q-09		17468927	33835639	36	39717										
ZBTB33	0	genome.wustl.edu	37	chrX	119389284	119389285	+	Frame_Shift_Ins	INS	-	-	TA													0.0540540540540541	2	0.977248040227864	0.765227021040975	1.33914728682171	0.535658914728682	1	1	0	atttataataccagagtcttINSactaaactcctttgaaatac							TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	X	119389284	119389285	-	TA	INS	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	frame_shift_ins	c.2014_2015	p.Y672fs	1.000:1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	49	0	0	20	6	23.08	-	-	-	TA	119389285	-	TA	119389284	7	5	380	1	0	1	1	0	0	0	0	0	17632	1754	61	0	2016	0	ZBTB33	23	119389284	Frame_Shift_Ins	INS	-	TCGA-AR-A1AQ-01A-11D-A12Q-09		119389284	35881276	37	39718										
C1orf94	0	genome.wustl.edu	37	chr1	34663500	34663500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ggctgaccctgctgtggagaGgcaccacttgatgggtgagt	16	9	0	4			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	34663500	34663500	G	A	SNP	C1orf94	ENST00000488417	human	ensembl	69_37n	1	known	missense	c.995	p.R332K	0.994	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698	56	0	0	39	14	26.42	-	-	-	A	34663500	G	A	34663500	3	1	381	1	0	0	0	0	1	0	0	0	2091	1000	35	4	1001	4	C1orf94	1	34663500	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		34663500	214587121	1	39719										
ITGA10	0	genome.wustl.edu	37	chr1	145530929	145530929	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	tacatgagtggtccctgggaGatttccgaacgaaggaagaa	13	7	0	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	145530929	145530929	G	A	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.661	p.D221N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	306	0	0	408	116	22.14	-	-	-	A	145530929	G	A	145530929	3	1	381	1	0	0	0	0	1	0	0	0	7927	942	33	2	687	2	ITGA10	1	145530929	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	110867429	145530929	103719692	2	39720										
RPRD2	0	genome.wustl.edu	37	chr1	150430016	150430016	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	tggaagacatggaactctcaGatgtggaagatgatgggtca	14	5	2	4			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	150430016	150430016	G	T	SNP	RPRD2	ENST00000369068	human	ensembl	69_37n	1	known	missense	c.1123	p.D375Y	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	195	0	0	377	49	11.5	-	-	-	T	150430016	G	T	150430016	3	4	381	1	0	0	0	0	1	0	0	0	13703	942	33	2	1153	2	RPRD2	1	150430016	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	4899087	150430016	98820605	3	39721										
FLG	0	genome.wustl.edu	37	chr1	152286025	152286025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	actcttggtggctctgctgtCtcagcccagcctttccgtgg	11	14	3	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	152286025	152286025	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.1337	p.R446T	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	350	0	0	624	76	10.86	-	-	-	G	152286025	C	G	152286025	3	3	381	1	0	0	0	0	1	0	0	0	5968	913	32	2	10852	2	FLG	1	152286025	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	1856009	152286025	96964596	4	39722										
UCK2	0	genome.wustl.edu	37	chr1	165875164	165875164	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gtctttctccacagacaaagAagtatgctgatgtgatcatc	8	9	3	4			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	165875164	165875164	A	T	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	nonsense	c.604	p.K202*	1.000	pfam_PRK/URK,prints_Uridine_kinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	336	1	0.3	368	74	16.7	-	-	-	T	165875164	A	T	165875164	4	4	381	1	0	0	0	0	0	1	0	0	17021	247	9	5	626	5	UCK2	1	165875164	Nonsense_Mutation	SNP	A	TCGA-AR-A1AR-01A-31D-A135-09	13589139	165875164	83375457	5	39723										
LHX4	0	genome.wustl.edu	37	chr1	180243387	180243387	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	aacgtgggggacgttacaggCggacagttaatgaatgggag	17	5	0	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	180243387	180243387	C	T	SNP	LHX4	ENST00000263726	human	ensembl	69_37n	1	known	silent	c.846	p.G282	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX4	HGNC	ENSG00000121454	90	0	0	92	27	22.69	-	-	-	T	180243387	C	T	180243387	2	4	381	1	0	0	0	0	0	0	0	1	8828	755	27	1		1	LHX4	1	180243387	Silent	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	14368223	180243387	69007234	6	39724										
CENPF	0	genome.wustl.edu	37	chr1	214803928	214803928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cactggaccaggagtgcatcCagatgaaggccagactcacc	11	13	1	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	214803928	214803928	C	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.1246	p.Q416K	0.996	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	228	0	0	263	71	21.26	-	-	-	A	214803928	C	A	214803928	3	1	381	1	0	0	0	0	1	0	0	0	3260	595	21	4	1276	4	CENPF	1	214803928	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	34560541	214803928	34446693	7	39725										
GNPAT	0	genome.wustl.edu	37	chr1	231403518	231403518	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gcaaattgaaaacatggtttTgagcccctggaccctaatag	9	9	0	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	1	231403518	231403518	T	G	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	missense	c.1148	p.L383W	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	153	0	0	193	40	17.17	-	-	-	G	231403518	T	G	231403518	3	3	381	1	0	0	0	0	1	0	0	0	6593	1821	63	5	1182	5	GNPAT	1	231403518	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	16599590	231403518	17847103	8	39726										
FSHR	0	genome.wustl.edu	37	chr2	49190072	49190072	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	atctctgcgaaagtttttggTaaagatggcatagaggaagg	13	4	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	2	49190072	49190072	T	C	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.1888	p.T630A	1.000	prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	315	0	0	259	97	27.17	-	-	-	C	49190072	T	C	49190072	3	2	381	1	0	0	0	0	1	0	0	0	6122	1638	57	5	203	5	FSHR	2	49190072	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09		49190072	194009301	9	39727										
TTC31	0	genome.wustl.edu	37	chr2	74719297	74719297	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agctttgctcaaaatggtttCtaccatgaggccgtggtcct	10	10	2	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	2	74719297	74719297	C	G	SNP	TTC31	ENST00000233623	human	ensembl	69_37n	1	novel	missense	c.960	p.F320L	0.994	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC31	HGNC	ENSG00000115282	266	0	0	188	82	30.37	-	-	-	G	74719297	C	G	74719297	3	3	381	1	0	0	0	0	1	0	0	0	16797	912	32	2	998	2	TTC31	2	74719297	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	25529225	74719297	168480076	10	39728										
BAZ2B	0	genome.wustl.edu	37	chr2	160181323	160181323	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	actgaaatgatttacttactGtccactacttagtttctctc	4	10	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	2	160181323	160181323	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	nonsense	c.6352	p.Q2118*	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	86	0	0	108	23	17.56	-	-	-	A	160181323	G	A	160181323	4	1	381	1	0	0	0	0	0	1	0	0	1336	1391	48	4	162	4	BAZ2B	2	160181323	Nonsense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	85462026	160181323	83018050	11	39729										
ZFAND2B	0	genome.wustl.edu	37	chr2	220072393	220072393	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	atccaggtacctgtgtgcccTctctgtaatgtgcctgtgcc	10	13	1	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	2	220072393	220072393	T	C	SNP	ZFAND2B	ENST00000289528	human	ensembl	69_37n	1	known	silent	c.174	p.P58	0.012	NULL	pfam_Znf_AN1,smart_Znf_AN1,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Znf_AN1	-	no_errors	ZFAND2B	HGNC	ENSG00000158552	186	0	0	123	49	28.49	-	-	-	C	220072393	T	C	220072393	2	2	381	1	0	0	0	0	0	0	0	1	17724	1538	54	5		5	ZFAND2B	2	220072393	Silent	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	59891070	220072393	23126980	12	39730										
CMTM7	0	genome.wustl.edu	37	chr3	32490993	32490993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ctgctcctcctcatcgcctcCattgtggcagcttccaagag	8	16	1	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	32490993	32490993	C	T	SNP	CMTM7	ENST00000334983	human	ensembl	69_37n	1	known	silent	c.381	p.S127	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	CMTM7	HGNC	ENSG00000153551	352	0	0	313	80	20.3	-	-	-	T	32490993	C	T	32490993	2	4	381	1	0	0	0	0	0	0	0	1	3618	581	21	4		4	CMTM7	3	32490993	Silent	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		32490993	165531437	13	39731										
ITIH4	0	genome.wustl.edu	37	chr3	52860882	52860882	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cccaaacgccgcttgagcagCtcctcatagaccagctcaaa	7	16	2	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	52860882	52860882	C	A	SNP	ITIH4	ENST00000266041	human	ensembl	69_37n	-1	known	missense	c.444	p.E148D	1.000	pfam_VIT,smart_VIT	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955	101	0	0	67	31	31.63	-	-	-	A	52860882	C	A	52860882	3	1	381	1	0	0	0	0	1	0	0	0	7960	796	28	4	2432	4	ITIH4	3	52860882	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	20369889	52860882	145161548	14	39732										
CLDND1	0	genome.wustl.edu	37	chr3	98217028	98217028	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cttgtatttaggttagttttCtgtggattgaatcacatcaa	8	5	3	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	98217028	98217028	C	T	SNP	CLDND1	ENST00000502288	human	ensembl	69_37n	-1	putative	splice_site	c.257-1	e4-1	0.994	-	-	-	no_errors	CLDND1	HGNC	ENSG00000080822	546	1	0.18	486	176	26.59	-	-	-	T	98217028	C	T	98217028	5	4	381	1	0	0	0	0	0	0	1	0	3523	912	32	2		2	CLDND1	3	98217028	Splice_Site	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	45356146	98217028	99805402	15	39733										
COL6A6	0	genome.wustl.edu	37	chr3	130300437	130300437	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	atgttgtggtgggatttgatGtctcaactcaggagaaaggg	15	4	2	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	130300437	130300437	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.3580	p.V1194F	0.984	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	383	0	0	387	110	22.13	-	-	-	T	130300437	G	T	130300437	3	4	381	1	0	0	0	0	1	0	0	0	3733	1377	48	4	3610	4	COL6A6	3	130300437	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	32083409	130300437	67721993	16	39734										
CLSTN2	0	genome.wustl.edu	37	chr3	140122483	140122483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ttctgcaggggaaatctgtgCgttcaagatccatggccagg	13	9	3	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	140122483	140122483	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.245	p.A82V	0.981	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	155	0	0	126	48	27.59	-	-	-	T	140122483	C	T	140122483	3	4	381	1	0	0	0	0	1	0	0	0	3592	768	27	1	255	1	CLSTN2	3	140122483	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	9822046	140122483	57899947	17	39735										
KNG1	0	genome.wustl.edu	37	chr3	186450435	186450435	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cgcaactttctatttcaagaTtgacaatgtgaaaaaagcaa	6	7	2	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	3	186450435	186450435	T	C	SNP	KNG1	ENST00000265023	human	ensembl	69_37n	1	known	missense	c.902	p.I301T	1.000	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889	162	0	0	164	73	30.8	-	-	-	C	186450435	T	C	186450435	3	2	381	1	0	0	0	0	1	0	0	0	8480	1493	52	5	928	5	KNG1	3	186450435	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	46327952	186450435	11571995	18	39736										
CLCN3	0	genome.wustl.edu	37	chr4	170557240	170557240	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agatggtgacactgcagttgGtaagttcagcatgacagcct	12	8	1	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	4	170557240	170557240	G	T	SNP	CLCN3	ENST00000347613	human	ensembl	69_37n	1	known	splice_site	c.160+1	e1+1	1.000	-	-	-	no_errors	CLCN3	HGNC	ENSG00000109572	204	0	0	125	50	28.57	-	-	-	T	170557240	G	T	170557240	5	4	381	1	0	0	0	0	0	0	1	0	3494	1275	44	4	163	4	CLCN3	4	170557240	Splice_Site	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		170557240	20597036	19	39737										
NPR3	0	genome.wustl.edu	37	chr5	32724819	32724819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cctagtggtgatcatgtgtgCgagcagtgacaccatccgga	13	10	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	5	32724819	32724819	C	T	SNP	NPR3	ENST00000265074	human	ensembl	69_37n	1	known	missense	c.785	p.A262V	1.000	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389	489	0	0	244	141	36.53	-	-	-	T	32724819	C	T	32724819	3	4	381	1	0	0	0	0	1	0	0	0	10669	768	27	1	791	1	NPR3	5	32724819	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		32724819	148190441	20	39738										
PCDHA13	0	genome.wustl.edu	37	chr5	140263908	140263908	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	tcgtcgagggcgtcggcaggCgctgtgggtccagaagcggc	19	11	0	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	5	140263908	140263908	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	silent	c.2055	p.G685	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	44	0	0	22	10	31.25	-	-	-	T	140263908	C	T	140263908	2	4	381	1	0	0	0	0	0	0	0	1	11596	755	27	1		1	PCDHA13	5	140263908	Silent	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	107539089	140263908	40651352	21	39739										
SNRNP48	0	genome.wustl.edu	37	chr6	7609080	7609080	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	atggggaaagacaccatagtCataaaagaagaaagcaaaaa	9	5	1	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	6	7609080	7609080	C	T	SNP	SNRNP48	ENST00000342415	human	ensembl	69_37n	1	known	missense	c.994	p.H332Y	1.000	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566	135	0	0	105	38	26.57	-	-	-	T	7609080	C	T	7609080	3	4	381	1	0	0	0	0	1	0	0	0	14946	826	29	2	1028	2	SNRNP48	6	7609080	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		7609080	163505987	22	39740										
TINAG	0	genome.wustl.edu	37	chr6	54254622	54254622	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cctggggaaagtcatggggaGagaatggctatttcaggatt	15	5	2	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	6	54254622	54254622	G	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	nonsense	c.1330	p.E444*	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	198	0	0	164	45	21.53	-	-	-	T	54254622	G	T	54254622	4	4	381	1	0	0	0	0	0	1	0	0	16016	943	33	2	1372	2	TINAG	6	54254622	Nonsense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	46645542	54254622	116860445	23	39741										
SLC22A16	0	genome.wustl.edu	37	chr6	110778014	110778014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	caccattctgcaactgcaccGtaacataatctttctggcct	5	14	3	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	6	110778014	110778014	G	A	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.260	p.T87M	0.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	360	0	0	306	103	25.18	-	-	-	A	110778014	G	A	110778014	3	1	381	1	0	0	0	0	1	0	0	0	14536	1145	40	1	1501	1	SLC22A16	6	110778014	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	56523392	110778014	60337053	24	39742										
TAX1BP1	0	genome.wustl.edu	37	chr7	27833979	27833979	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cttcacaaagaaaacggggaAtcagcagaaagtgaatgatg	11	6	2	4			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	7	27833979	27833979	A	T	SNP	TAX1BP1	ENST00000396319	human	ensembl	69_37n	1	known	missense	c.1448	p.N483I	0.869	NULL	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	178	0	0	147	47	24.23	-	-	-	T	27833979	A	T	27833979	3	4	381	1	0	0	0	0	1	0	0	0	15686	101	4	5	1486	5	TAX1BP1	7	27833979	Missense_Mutation	SNP	A	TCGA-AR-A1AR-01A-31D-A135-09		27833979	131304684	25	39743										
PTPRZ1	0	genome.wustl.edu	37	chr7	121624110	121624110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	aacaattttcgagagcaacaGtacaagttctctagacaggt	8	8	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	7	121624110	121624110	G	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	silent	c.867	p.Q289	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	425	0	0	430	134	23.76	-	-	-	A	121624110	G	A	121624110	2	1	381	1	0	0	0	0	0	0	0	1	12897	1020	36	4		4	PTPRZ1	7	121624110	Silent	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	93790131	121624110	37514553	26	39744										
LRSAM1	0	genome.wustl.edu	37	chr9	130263396	130263396	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agctggaggtgcaggcctcaGagtgtgtcgtgtgcctggaa	17	8	1	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	9	130263396	130263396	G	C	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	missense	c.2020	p.E674Q	0.789	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	71	0	0	60	10	14.29	-	-	-	C	130263396	G	C	130263396	3	2	381	1	0	0	0	0	1	0	0	0	9109	943	33	2	2110	2	LRSAM1	9	130263396	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		130263396	10950035	27	39745										
CTNNA3	0	genome.wustl.edu	37	chr10	67726393	67726394	+	Frame_Shift_Ins	INS	-	-	T													0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gacatgatgagctctcctccINScaggttctggatctcagctt							TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	10	67726393	67726394	-	T	INS	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2377_2376	p.G792fs	1.000:0.931	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	209	0	0	204	59	22.43	-	-	-	T	67726394	-	T	67726393	7	5	381	1	0	1	1	0	0	0	0	0	4046	632	22	0	318	0	CTNNA3	10	67726393	Frame_Shift_Ins	INS	-	TCGA-AR-A1AR-01A-31D-A135-09		67726393	67808354	28	39746	329	2								
CTNNA3	0	genome.wustl.edu	37	chr10	67726396	67726396	+	Missense_Mutation	SNP	G	G	T													0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	catgatgagctctcctcccaGgttctggatctcagctttaa							TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	10	67726396	67726396	G	T	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	missense	c.2374	p.L792M	0.999	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	215	0	0	207	64	23.62	-	-	-	T	67726396	G	T	67726396	3	4	381	1	0	0	0	0	1	0	0	0	4046	991	35	4	321	4	CTNNA3	10	67726396	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	3	67726396	67808351	29	39747	329	2								
OR5D18	0	genome.wustl.edu	37	chr11	55587494	55587494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cttcgtggccatttgcaaccCtctgctctacacagttaaca	6	14	2	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	11	55587494	55587494	C	T	SNP	OR5D18	ENST00000333976	human	ensembl	69_37n	1	known	missense	c.389	p.P130L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119	371	0	0	289	81	21.89	-	-	-	T	55587494	C	T	55587494	3	4	381	1	0	0	0	0	1	0	0	0	11230	681	24	4	391	4	OR5D18	11	55587494	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		55587494	79419022	30	39748										
KLRF1	0	genome.wustl.edu	37	chr12	9985925	9985925	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agggagtattgctaaaatgcCaaaaaggaagttgttcaaat	10	4	1	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	12	9985925	9985925	C	T	SNP	KLRF1	ENST00000279544	human	ensembl	69_37n	1	known	nonsense	c.211	p.Q71*	0.681	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRF1	HGNC	ENSG00000150045	277	0	0	167	79	32.11	-	-	-	T	9985925	C	T	9985925	4	4	381	1	0	0	0	0	0	1	0	0	8473	595	21	4	221	4	KLRF1	12	9985925	Nonsense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		9985925	123865970	31	39749										
LRRK2	0	genome.wustl.edu	37	chr12	40745430	40745430	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	attgttgaatgcatggttgcTacacatcacaacagcaggaa	9	8	1	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	12	40745430	40745430	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	silent	c.6471	p.A2157	0.137	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	197	0	0	88	57	39.31	-	-	-	G	40745430	T	G	40745430	2	3	381	1	0	0	0	0	0	0	0	1	9099	1509	53	5		5	LRRK2	12	40745430	Silent	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	30759505	40745430	93106465	32	39750										
DHRS2	0	genome.wustl.edu	37	chr14	24113663	24113663	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agacagcgctgctgggtctcActagaacactggcattggag	13	10	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	14	24113663	24113663	A	G	SNP	DHRS2	ENST00000344777	human	ensembl	69_37n	1	known	missense	c.586	p.T196A	0.999	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS2	HGNC	ENSG00000100867	111	0	0	37	26	41.27	-	-	-	G	24113663	A	G	24113663	3	3	381	1	0	0	0	0	1	0	0	0	4526	159	6	5	608	5	DHRS2	14	24113663	Missense_Mutation	SNP	A	TCGA-AR-A1AR-01A-31D-A135-09		24113663	83235877	33	39751										
TDRD9	0	genome.wustl.edu	37	chr14	104484481	104484481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ctataaacaactacagtctcTctttagacagtgtggtcaag	7	9	3	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	14	104484481	104484481	T	C	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	1	known	missense	c.2384	p.L795P	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	290	0	0	321	125	28.03	-	-	-	C	104484481	T	C	104484481	3	2	381	1	0	0	0	0	1	0	0	0	15831	1551	54	5	2474	5	TDRD9	14	104484481	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	80370818	104484481	2865059	34	39752										
BRF1	0	genome.wustl.edu	37	chr14	105683986	105683986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gctcgggctgtgcatcctccCtgtgcggactgcccccgccg	13	18	0	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	14	105683986	105683986	C	T	SNP	BRF1	ENST00000546474	human	ensembl	69_37n	-1	known	missense	c.1667	p.R556K	0.024	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB,pfscan_Znf_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024	81	0	0	38	20	34.48	-	-	-	T	105683986	C	T	105683986	3	4	381	1	0	0	0	0	1	0	0	0	1518	681	24	4	382	4	BRF1	14	105683986	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	1199505	105683986	1665554	35	39753										
PPL	0	genome.wustl.edu	37	chr16	4947726	4947726	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gctctcctcgcagatgagcaGgttcaggtactccttccagt	10	13	2	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	16	4947726	4947726	G	A	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	silent	c.922	p.L308	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	92	0	0	59	24	28.92	-	-	-	A	4947726	G	A	4947726	2	1	381	1	0	0	0	0	0	0	0	1	12411	991	35	4		4	PPL	16	4947726	Silent	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		4947726	85407027	36	39754										
CALB2	0	genome.wustl.edu	37	chr16	71417313	71417313	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gaaggcgaaccggccgtacgAtgagcccaagctccaggaat	13	12	0	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	16	71417313	71417313	A	T	SNP	CALB2	ENST00000302628	human	ensembl	69_37n	1	known	missense	c.443	p.D148V	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALB2	HGNC	ENSG00000172137	232	0	0	116	56	32.18	-	-	-	T	71417313	A	T	71417313	3	4	381	1	0	0	0	0	1	0	0	0	2599	333	12	5	465	5	CALB2	16	71417313	Missense_Mutation	SNP	A	TCGA-AR-A1AR-01A-31D-A135-09	66469587	71417313	18937440	37	39755										
ENO3	0	genome.wustl.edu	37	chr17	4857133	4857133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gaaccctgacctcatactccCagtgccagtgagtgcagcta	9	14	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	17	4857133	4857133	C	T	SNP	ENO3	ENST00000323997	human	ensembl	69_37n	1	known	missense	c.437	p.P146L	1.000	pfam_Enolase_C,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO3	HGNC	ENSG00000108515	158	0	0	77	45	36.89	-	-	-	T	4857133	C	T	4857133	3	4	381	1	0	0	0	0	1	0	0	0	5160	594	21	4	455	4	ENO3	17	4857133	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09		4857133	76338077	38	39756										
TP53	0	genome.wustl.edu	37	chr17	7579419	7579419	+	Frame_Shift_Del	DEL	A	A	-													0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	agaagatgacaggggccaggAgggggctggtgcaggggccg							TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	17	7579419	7579419	A	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.268	p.S90fs	0.136	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	53	0	0	30	14	29.17	-	-	-	-	7579419	A	-	7579419	7	5	381	1	0	1	0	1	0	0	0	0	16477	304	11	0	1034	0	TP53	17	7579419	Frame_Shift_Del	DEL	A	TCGA-AR-A1AR-01A-31D-A135-09	2722286	7579419	73615791	39	39757										
EVPL	0	genome.wustl.edu	37	chr17	74017827	74017827	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	tcctccagctggttcacgctCtgctcctggctcagcagctc	9	17	3	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	17	74017827	74017827	C	A	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.843	p.Q281H	0.890	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	25	0	0	12	9	42.86	-	-	-	A	74017827	C	A	74017827	3	1	381	1	0	0	0	0	1	0	0	0	5329	912	32	2	5318	2	EVPL	17	74017827	Missense_Mutation	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	66438408	74017827	7177383	40	39758										
MYO1F	0	genome.wustl.edu	37	chr19	8601262	8601262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	cgccaccgcggccacgtctcGggggtcagaatggcatacct	13	15	2	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	19	8601262	8601262	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	silent	c.1917	p.P639	0.153	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	102	0	0	200	41	17.01	-	-	-	A	8601262	G	A	8601262	2	1	381	1	0	0	0	0	0	0	0	1	10145	1103	39	1		1	MYO1F	19	8601262	Silent	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		8601262	50527721	41	39759										
RTN2	0	genome.wustl.edu	37	chr19	45991899	45991899	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ggccttcccagctcacccagAatgagaagagtcaaaccatt	8	13	2	3			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	19	45991899	45991899	A	T	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	silent	c.1446	p.I482	0.970	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	171	0	0	145	49	25.26	-	-	-	T	45991899	A	T	45991899	2	4	381	1	0	0	0	0	0	0	0	1	13812	242	9	5		5	RTN2	19	45991899	Silent	SNP	A	TCGA-AR-A1AR-01A-31D-A135-09	37390637	45991899	13137084	42	39760										
ZNF415	0	genome.wustl.edu	37	chr19	53612856	53612856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ttgaaactgctgcagttcatGgggatgtggtagaaagctta	13	5	1	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	19	53612856	53612856	G	A	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	missense	c.586	p.H196Y	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	243	0	0	186	78	29.55	-	-	-	A	53612856	G	A	53612856	3	1	381	1	0	0	0	0	1	0	0	0	17988	1348	47	4	1229	4	ZNF415	19	53612856	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	7620957	53612856	5516127	43	39761										
TTYH1	0	genome.wustl.edu	37	chr19	54937907	54937907	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ctggtctgcctcttcaccctCctgggcctggcgaagcagag	12	15	3	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	19	54937907	54937907	C	T	SNP	TTYH1	ENST00000376531	human	ensembl	69_37n	1	known	silent	c.696	p.L232	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614	110	0	0	89	28	23.93	-	-	-	T	54937907	C	T	54937907	2	4	381	1	0	0	0	0	0	0	0	1	16836	842	30	2		2	TTYH1	19	54937907	Silent	SNP	C	TCGA-AR-A1AR-01A-31D-A135-09	1325051	54937907	4191076	44	39762										
SSX5	0	genome.wustl.edu	37	chrX	48049613	48049613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	aggtatttagttttcctgagGggcgcagctgtttcccattg	12	8	0	1			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	X	48049613	48049613	G	T	SNP	SSX5	ENST00000311798	human	ensembl	69_37n	-1	known	missense	c.545	p.P182H	0.000	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX5	HGNC	ENSG00000165583	553	0	0	495	217	30.48	-	-	-	T	48049613	G	T	48049613	3	4	381	1	0	0	0	0	1	0	0	0	15299	1232	43	4	152	4	SSX5	23	48049613	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09		48049613	107220947	45	39763										
TFE3	0	genome.wustl.edu	37	chrX	48887874	48887874	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ctcccaggtcccccaggtggTcgctgggaaagtgcaggtcc	14	14	0	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	X	48887874	48887874	T	A	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	missense	c.1523	p.D508V	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	106	0	0	85	18	17.31	-	-	-	A	48887874	T	A	48887874	3	1	381	1	0	0	0	0	1	0	0	0	15895	1667	58	5	208	5	TFE3	23	48887874	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	838261	48887874	106382686	46	39764										
RRAGB	0	genome.wustl.edu	37	chrX	55757917	55757917	+	Frame_Shift_Del	DEL	T	T	-													0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	ctggaaaaggacatgcactaTtaccaatcatgcctggaggc							TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	X	55757917	55757917	T	-	DEL	RRAGB	ENST00000262850	human	ensembl	69_37n	1	known	frame_shift_del	c.498	p.Y167fs	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR	-	no_errors	RRAGB	HGNC	ENSG00000083750	159	0	0	140	44	23.78	-	-	-	-	55757917	T	-	55757917	7	5	381	1	0	1	0	1	0	0	0	0	13759	1500	52	0	520	0	RRAGB	23	55757917	Frame_Shift_Del	DEL	T	TCGA-AR-A1AR-01A-31D-A135-09	6870043	55757917	99512643	47	39765										
HDX	0	genome.wustl.edu	37	chrX	83581199	83581199	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	gacctacctgctgttgttccTtatcatcagctttcattgct	6	12	3	0			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	X	83581199	83581199	T	G	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.1934	p.K645T	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	348	0	0	277	108	28.05	-	-	-	G	83581199	T	G	83581199	3	3	381	1	0	0	0	0	1	0	0	0	7077	1609	56	5	146	5	HDX	23	83581199	Missense_Mutation	SNP	T	TCGA-AR-A1AR-01A-31D-A135-09	27823282	83581199	71689361	48	39766										
AMOT	0	genome.wustl.edu	37	chrX	112065720	112065720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.338222576909652	1.7585236158899	6.7410071942446	1.01115107913669	1	1	0	tgtagaattcactggaacttGtgggattcttgtagaggtca	12	5	3	2			TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	008ba655-a0a3-42c4-8c72-f1341365ef02	0395a62f-3f37-4068-bab6-4c1d29cef2d5	X	112065720	112065720	G	T	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.635	p.T212K	0.998	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	659	2	0.3	532	157	22.79	-	-	-	T	112065720	G	T	112065720	3	4	381	1	0	0	0	0	1	0	0	0	582	1377	48	4	2663	4	AMOT	23	112065720	Missense_Mutation	SNP	G	TCGA-AR-A1AR-01A-31D-A135-09	28484521	112065720	43204840	49	39767										
SLC6A9	0	genome.wustl.edu	37	chr1	44468079	44468079	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gaagatctgggaggcagcatCaccccacacctgcagggaag	13	12	2	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	44468079	44468079	C	A	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.1087	p.D363Y	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	57	0	0	36	4	10	-	-	-	A	44468079	C	A	44468079	3	1	382	1	0	0	0	0	1	0	0	0	14780	826	29	2	1061	2	SLC6A9	1	44468079	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		44468079	204782542	1	39768										
THEM5	0	genome.wustl.edu	37	chr1	151819737	151819738	+	Frame_Shift_Del	DEL	GG	GG	-													0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	caggaggcaggaggcaggcaGgggaggcaggaggcaggcag							TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	151819737	151819738	GG	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.642_641	p.P214fs	0.878:0.888	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	8	0	0	7	4	33.33	-	-	-	-	151819738	GG	-	151819737	7	5	382	1	0	1	0	1	0	0	0	0	15954	1015	35	0		0	THEM5	1	151819737	Frame_Shift_Del	DEL	GG	TCGA-AR-A1AS-01A-11D-A12Q-09	107351658	151819737	97430884	2	39769										
SPRR2B	0	genome.wustl.edu	37	chr1	153043220	153043220	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ggtggtgggcagggctcaggGcacttcgggggtggacatgg	22	7	1	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	153043220	153043220	G	T	SNP	SPRR2B	ENST00000341611	human	ensembl	69_37n	-1	known	nonsense	c.96	p.C32*	0.151	NULL	NULL	-	no_errors	SPRR2B	HGNC	ENSG00000196805	249	0	0	149	47	23.98	-	-	-	T	153043220	G	T	153043220	4	4	382	1	0	0	0	0	0	1	0	0	15189	1195	42	4	126	4	SPRR2B	1	153043220	Nonsense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	1223483	153043220	96207401	3	39770										
SPTA1	0	genome.wustl.edu	37	chr1	158605731	158605733	+	In_Frame_Del	DEL	CCC	CCC	-													0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ggccaactctttgagcttctCccagtgttcaacaaactgag							TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	158605731	158605733	CCC	-	DEL	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	in_frame_del	c.5404_5402	p.WEKLK1801in_frame_del*	1.000:1.000:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	108	0	0	84	10	10.53	-	-	-	-	158605733	CCC	-	158605731	7	5	382	1	0	1	0	1	0	0	0	0	15207	864	30	0	1915	0	SPTA1	1	158605731	In_Frame_Del	DEL	CCC	TCGA-AR-A1AS-01A-11D-A12Q-09	5562511	158605731	90644890	4	39771										
C1orf111	0	genome.wustl.edu	37	chr1	162343895	162343895	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aggtgttcagcaggactattGaaggcctggcagctgccgga	15	9	1	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	162343895	162343895	G	A	SNP	C1orf111	ENST00000367935	human	ensembl	69_37n	-1	known	silent	c.729	p.F243	1.000	NULL	NULL	-	no_errors	C1orf111	HGNC	ENSG00000171722	66	0	0	60	7	10.45	-	-	-	A	162343895	G	A	162343895	2	1	382	1	0	0	0	0	0	0	0	1	2003	1281	45	2		2	C1orf111	1	162343895	Silent	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	3738164	162343895	86906726	5	39772										
GLRX2	0	genome.wustl.edu	37	chr1	193065756	193065756	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aaacttattagtataaacatCactgaaattctttcctctta	2	8	3	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	193065756	193065756	C	G	SNP	GLRX2	ENST00000367440	human	ensembl	69_37n	-1	known	nonstop	c.497	p.*166S	0.093	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572	193	0	0	103	22	17.46	-	-	-	G	193065756	C	G	193065756	4	3	382	1	0	0	0	0	0	0	0	0	6512	837	29	2	4	2	GLRX2	1	193065756	Nonstop_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	30721861	193065756	56184865	6	39773										
ZC3H11A	0	genome.wustl.edu	37	chr1	203819082	203819082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	catcccagaaggtggaggtaGaaacctcagggattggagac	14	8	1	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	203819082	203819082	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.1867	p.E623K	0.989	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	74	0	0	42	9	17.65	-	-	-	A	203819082	G	A	203819082	3	1	382	1	0	0	0	0	1	0	0	0	17656	943	33	2	1917	2	ZC3H11A	1	203819082	Missense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	10753326	203819082	45431539	7	39774										
RYR2	0	genome.wustl.edu	37	chr1	237632461	237632461	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cctcgactggttgatcagcaGattggaaagactggaagctt	12	8	1	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	237632461	237632461	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1676	p.R559I	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	363	0	0	229	61	20.89	-	-	-	T	237632461	G	T	237632461	3	4	382	1	0	0	0	0	1	0	0	0	13855	942	33	2	1748	2	RYR2	1	237632461	Missense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	33813379	237632461	11618160	8	39775										
BCL11A	0	genome.wustl.edu	37	chr2	60687616	60687616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	tttctccagggtactgtacaCgctaaaaggcatcttacaaa	7	10	2	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	2	60687616	60687616	C	T	SNP	BCL11A	ENST00000335712	human	ensembl	69_37n	-1	known	missense	c.2431	p.V811M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866	100	0	0	27	18	40	-	-	-	T	60687616	C	T	60687616	3	4	382	1	0	0	0	0	1	0	0	0	1367	536	19	1	186	1	BCL11A	2	60687616	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		60687616	182511757	9	39776										
TTN	0	genome.wustl.edu	37	chr2	179427821	179427821	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aacgaccacctttctgagatCagcatcgagttctatttctg	7	11	4	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	2	179427821	179427821	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.75334	p.D25112N	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	99	1	0.99	33	23	41.07	-	-	-	T	179427821	C	T	179427821	3	4	382	1	0	0	0	0	1	0	0	0	16832	826	29	2	25089	2	TTN	2	179427821	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	118740205	179427821	63771552	10	39777										
RBM6	0	genome.wustl.edu	37	chr3	50095901	50095901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	agtggaagtgctggagccctAtgtccgccttactactgcca	11	12	0	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	3	50095901	50095901	A	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.2036	p.Y679C	0.997	smart_RRM_dom	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	110	0	0	43	50	53.76	-	-	-	G	50095901	A	G	50095901	3	3	382	1	0	0	0	0	1	0	0	0	13227	449	16	5	2070	5	RBM6	3	50095901	Missense_Mutation	SNP	A	TCGA-AR-A1AS-01A-11D-A12Q-09		50095901	147926529	11	39778										
PIK3CA	0	genome.wustl.edu	37	chr3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	tcctctctctgaaatcactgAgcaggagaaagattttctat	7	9	4	4			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	3	178936092	178936092	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1634	p.E545A	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	189	0	0	46	48	51.06	-	-	-	C	178936092	A	C	178936092	3	2	382	1	0	0	0	0	1	0	0	0	11987	304	11	5	1668	5	PIK3CA	3	178936092	Missense_Mutation	SNP	A	TCGA-AR-A1AS-01A-11D-A12Q-09	128840191	178936092	19086338	12	39779										
GOLPH3	0	genome.wustl.edu	37	chr5	32143957	32143957	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cagccacgtaatccagatgaTatacagtcattccaaaatga	6	10	1	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	32143957	32143957	T	C	SNP	GOLPH3	ENST00000265070	human	ensembl	69_37n	-1	known	missense	c.255	p.I85M	1.000	pfam_GPP34	pfam_GPP34	-	no_errors	GOLPH3	HGNC	ENSG00000113384	212	0	0	53	49	48.04	-	-	-	C	32143957	T	C	32143957	3	2	382	1	0	0	0	0	1	0	0	0	6617	1396	49	5	653	5	GOLPH3	5	32143957	Missense_Mutation	SNP	T	TCGA-AR-A1AS-01A-11D-A12Q-09		32143957	148771303	13	39780										
PCDHA4	0	genome.wustl.edu	37	chr5	140187112	140187112	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aggtgatcgtagacaggccgCtgcaggttttccatgtggac	14	9	0	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	140187112	140187112	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.340	p.L114	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	105	0	0	43	11	20.37	-	-	-	T	140187112	C	T	140187112	2	4	382	1	0	0	0	0	0	0	0	1	11599	796	28	4		4	PCDHA4	5	140187112	Silent	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	108043155	140187112	40728148	14	39781										
ATP10B	0	genome.wustl.edu	37	chr5	160097495	160097495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gtgagaagcccttcacgacaCatctttgcttgaggtttgtc	10	10	2	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	160097495	160097495	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.650	p.C217Y	0.712	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	256	2	0.78	89	42	32.06	-	-	-	T	160097495	C	T	160097495	3	4	382	1	0	0	0	0	1	0	0	0	1121	478	17	4	3815	4	ATP10B	5	160097495	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	19910383	160097495	20817765	15	39782										
PLXNA4	0	genome.wustl.edu	37	chr7	131848926	131848926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ttttgtagtcaatctgctggCggatgagcttgtcctcgctc	11	10	2	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	131848926	131848926	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.4475	p.R1492H	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	175	0	0	69	44	38.94	-	-	-	T	131848926	C	T	131848926	3	4	382	1	0	0	0	0	1	0	0	0	12196	768	27	1	1245	1	PLXNA4	7	131848926	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		131848926	27289737	16	39783										
EPHB6	0	genome.wustl.edu	37	chr7	142568630	142568630	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cagctccttcagcaacacctGaggcagcagggctcagtgga	12	13	2	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	142568630	142568630	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	silent	c.3039	p.L1013	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_SAM/pointed	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	30	0	0	22	17	43.59	-	-	-	A	142568630	G	A	142568630	2	1	382	1	0	0	0	0	0	0	0	1	5215	1277	45	2		2	EPHB6	7	142568630	Silent	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	10719704	142568630	16570033	17	39784										
GIMAP4	0	genome.wustl.edu	37	chr7	150269546	150269546	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	tgggccgttacactgaggaaGagcacaaagccacagagaag	13	9	0	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	150269546	150269546	G	A	SNP	GIMAP4	ENST00000255945	human	ensembl	69_37n	1	known	missense	c.388	p.E130K	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP4	HGNC	ENSG00000133574	98	0	0	19	14	42.42	-	-	-	A	150269546	G	A	150269546	3	1	382	1	0	0	0	0	1	0	0	0	6433	943	33	2	394	2	GIMAP4	7	150269546	Missense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	7700916	150269546	8869117	18	39785										
GATA3	0	genome.wustl.edu	37	chr10	8100440	8100440	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gtctaccccccggcctcgtcCtcctccttgtcggggggcca	11	19	1	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	8100440	8100440	C	G	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	silent	c.414	p.S138	0.884	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0	18	10	35.71	-	-	-	G	8100440	C	G	8100440	2	3	382	1	0	0	0	0	0	0	0	1	6305	668	24	4		4	GATA3	10	8100440	Silent	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		8100440	127434307	19	39786										
GPRIN2	0	genome.wustl.edu	37	chr10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gccgggaacagaggccagagCtccgcaagactgccagcagc	14	14	0	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	10	0	0	8	4	33.33	-	-	-	G	46998995	C	G	46998995	3	3	382	1	0	0	0	0	1	0	0	0	6781	797	28	4	117	4	GPRIN2	10	46998995	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	38898555	46998995	88535752	20	39787										
MYOF	0	genome.wustl.edu	37	chr10	95137179	95137182	+	Frame_Shift_Del	DEL	TTTG	TTTG	-													0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ctgattttagagcttctataTttgtttgctgaagaatttga							TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	TTTG	TTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	95137179	95137182	TTTG	-	DEL	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	frame_shift_del	c.2009_2006	p.T669fs	0.987:0.989:0.900:0.996	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	365	0	0	98	44	30.99	-	-	-	-	95137182	TTTG	-	95137179	7	5	382	1	0	1	0	1	0	0	0	0	10161	1493	52	0	4308	0	MYOF	10	95137179	Frame_Shift_Del	DEL	TTTG	TCGA-AR-A1AS-01A-11D-A12Q-09	48138184	95137179	40397568	21	39788										
CNGA4	0	genome.wustl.edu	37	chr11	6261794	6261794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cttcctgctggccgtcatggGtttcgccaccatcatgggta	11	13	2	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	6261794	6261794	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	missense	c.770	p.G257D	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	50	0	0	19	10	34.48	-	-	-	A	6261794	G	A	6261794	3	1	382	1	0	0	0	0	1	0	0	0	3629	1261	44	4	784	4	CNGA4	11	6261794	Missense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09		6261794	128744722	22	39789										
MUC15	0	genome.wustl.edu	37	chr11	26582735	26582735	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	tagctagaattcccaaaactCacatcataaggttccggtgc	7	11	2	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	26582735	26582735	C	T	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	silent	c.963	p.V321	0.113	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	322	0	0	93	54	36.73	-	-	-	T	26582735	C	T	26582735	2	4	382	1	0	0	0	0	0	0	0	1	10044	813	29	2		2	MUC15	11	26582735	Silent	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	20320941	26582735	108423781	23	39790										
NXF1	0	genome.wustl.edu	37	chr11	62572858	62572858	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aagatcaagggcgggctcagGcgctggccgctacgccggca	16	13	2	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	62572858	62572858	G	A	SNP	NXF1	ENST00000526163	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NXF1	HGNC	ENSG00000162231	25	0	0	10	15	60	-	-	-	A	62572858	G	A	62572858	1	1	382	0	1	0	0	0	0	0	0	0	10855	1218	42	4		4	NXF1	11	62572858	RNA	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	35990123	62572858	72433658	24	39791										
KRAS	0	genome.wustl.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	12	25398284	25398284	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	264	0	0	82	35	29.91	-	-	-	A	25398284	C	A	25398284	3	1	382	1	0	0	0	0	1	0	0	0	8491	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		25398284	108453611	25	39792										
IRAK3	0	genome.wustl.edu	37	chr12	66638269	66638269	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cctgatcacaattttagtgcAaacatccttttggatgatca	6	9	2	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	12	66638269	66638269	A	C	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	1	known	silent	c.891	p.A297	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	156	0	0	38	31	44.93	-	-	-	C	66638269	A	C	66638269	2	2	382	1	0	0	0	0	0	0	0	1	7878	117	5	5		5	IRAK3	12	66638269	Silent	SNP	A	TCGA-AR-A1AS-01A-11D-A12Q-09	41239985	66638269	67213626	26	39793										
LRFN5	0	genome.wustl.edu	37	chr14	42360996	42360996	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	acttctgtgtcccaaaagcaGaaaagaaagactggcacaaa	8	9	1	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	14	42360996	42360996	G	A	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	silent	c.1929	p.Q643	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	157	0	0	44	32	42.11	-	-	-	A	42360996	G	A	42360996	2	1	382	1	0	0	0	0	0	0	0	1	9007	933	33	2		2	LRFN5	14	42360996	Silent	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09		42360996	64988544	27	39794										
LARP6	0	genome.wustl.edu	37	chr15	71128708	71128708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cacgtgttttagcaaaaaggCgtccttctccaggttttcat	8	10	2	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	15	71128708	71128708	C	T	SNP	LARP6	ENST00000299213	human	ensembl	69_37n	-1	known	missense	c.337	p.A113T	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	-	no_errors	LARP6	HGNC	ENSG00000166173	156	0	0	41	35	45.45	-	-	-	T	71128708	C	T	71128708	3	4	382	1	0	0	0	0	1	0	0	0	8686	768	27	1	1146	1	LARP6	15	71128708	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		71128708	31402684	28	39795										
LCAT	0	genome.wustl.edu	37	chr16	67977911	67977911	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gggcgtggtgtgcggggggaAgagcacattgaggagccaga	21	6	0	3			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	16	67977911	67977911	A	T	SNP	LCAT	ENST00000264005	human	ensembl	69_37n	-1	known	missense	c.94	p.F32I	1.000	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398	42	0	0	23	24	50	-	-	-	T	67977911	A	T	67977911	3	4	382	1	0	0	0	0	1	0	0	0	8712	72	3	5	1252	5	LCAT	16	67977911	Missense_Mutation	SNP	A	TCGA-AR-A1AS-01A-11D-A12Q-09		67977911	22376842	29	39796										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	73	0	0	20	22	52.38	-	-	-	T	7578406	C	T	7578406	3	4	382	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		7578406	73616804	30	39797										
MAP2K4	0	genome.wustl.edu	37	chr17	12016634	12016634	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cagtggacagcttgtggactCtattgccaagacaagagatg	12	8	1	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	12016634	12016634	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.803	p.S268F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	120	0	0	13	17	56.67	-	-	-	T	12016634	C	T	12016634	3	4	382	1	0	0	0	0	1	0	0	0	9310	913	32	2	796	2	MAP2K4	17	12016634	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	4438228	12016634	69178576	31	39798										
EIF4A3	0	genome.wustl.edu	37	chr17	78110120	78110120	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ccctggcccagacatctgtaGaaataagcactcggctgcaa	9	13	1	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	78110120	78110120	G	C	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.998	p.S333C	0.890	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	184	0	0	52	16	23.53	-	-	-	C	78110120	G	C	78110120	3	2	382	1	0	0	0	0	1	0	0	0	5063	942	33	2	249	2	EIF4A3	17	78110120	Missense_Mutation	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09	66093486	78110120	3085090	32	39799										
TXNDC2	0	genome.wustl.edu	37	chr18	9887689	9887689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	cacccaaggagattgacatcCccaagtccccagaagaaacc	7	15	0	4			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	18	9887689	9887689	C	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	1	known	missense	c.1213	p.P405S	0.000	NULL	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	464	1	0.21	119	73	38.02	-	-	-	T	9887689	C	T	9887689	3	4	382	1	0	0	0	0	1	0	0	0	16894	623	22	4	1219	4	TXNDC2	18	9887689	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		9887689	68189559	33	39800										
MAPK4	0	genome.wustl.edu	37	chr18	48255652	48255652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	aggacgtgcaggtggacccgCgcaaggactcgcacagcagc	15	13	0	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	18	48255652	48255652	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.1192	p.R398C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	14	0	0	8	4	33.33	-	-	-	T	48255652	C	T	48255652	3	4	382	1	0	0	0	0	1	0	0	0	9351	768	27	1	1210	1	MAPK4	18	48255652	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	38367963	48255652	29821596	34	39801										
TOMM40	0	genome.wustl.edu	37	chr19	45406420	45406420	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	tgtggctttggcctcaccatCggctgagccctcctggcccc	11	17	1	1			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	19	45406420	45406420	C	T	SNP	TOMM40	ENST00000252487	human	ensembl	69_37n	1	known	silent	c.1080	p.I360	0.916	NULL	pfam_Porin_Euk	-	no_errors	TOMM40	HGNC	ENSG00000130204	38	0	0	36	5	12.2	-	-	-	T	45406420	C	T	45406420	2	4	382	1	0	0	0	0	0	0	0	1	16453	874	31	1		1	TOMM40	19	45406420	Silent	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09		45406420	13722563	35	39802										
LILRB3	0	genome.wustl.edu	37	chr19	54726628	54726628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	gacagactcacctgcctgcaCgcgggtcctggggcccagac	13	16	1	2			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	19	54726628	54726628	C	T	SNP	LILRB3	ENST00000346401	human	ensembl	69_37n	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	11	0	0	3	3	50	-	-	-	T	54726628	C	T	54726628	3	4	382	1	0	0	0	0	1	0	0	0	8847	536	19	1	1885	1	LILRB3	19	54726628	Missense_Mutation	SNP	C	TCGA-AR-A1AS-01A-11D-A12Q-09	9320208	54726628	4402355	36	39803										
EYA2	0	genome.wustl.edu	37	chr20	45801427	45801427	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ctgtgcctgggctctggcgtGcacggcggcgtggactggat	18	11	1	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	20	45801427	45801427	G	A	SNP	EYA2	ENST00000327619	human	ensembl	69_37n	1	known	silent	c.1110	p.V370	0.330	pfam_Dehalogen-like_hydro,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655	127	0	0	87	12	12.12	-	-	-	A	45801427	G	A	45801427	2	1	382	1	0	0	0	0	0	0	0	1	5366	1306	46	4		4	EYA2	20	45801427	Silent	SNP	G	TCGA-AR-A1AS-01A-11D-A12Q-09		45801427	17224093	37	39804										
HMGN5	0	genome.wustl.edu	37	chrX	80370668	80370668	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.263157894736842	10	0.0057726949775719	3.05882352941176	3.82352941176471	2.91316526610644	0.0360748418360478	0.289190125538154	7	ctttcttttctcctccctttTctgtggcatcttcaatattt	3	12	5	0			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	X	80370668	80370668	T	G	SNP	HMGN5	ENST00000358130	human	ensembl	69_37n	-1	known	missense	c.329	p.E110A	0.045	NULL	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	537	2	0.37	119	83	41.09	-	-	-	G	80370668	T	G	80370668	3	3	382	1	0	0	0	0	1	0	0	0	7289	1783	62	5	523	5	HMGN5	23	80370668	Missense_Mutation	SNP	T	TCGA-AR-A1AS-01A-11D-A12Q-09		80370668	74899892	38	39805										
EPS15	0	genome.wustl.edu	37	chr1	51864825	51864825	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ctgaacctttgaaaggatcaCcaccaaatggatctaaaaaa	6	9	2	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	1	51864825	51864825	C	A	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	missense	c.1931	p.G644V	1.000	NULL	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	146	1	0.68	69	27	28.12	-	-	-	A	51864825	C	A	51864825	3	1	383	1	0	0	0	0	1	0	0	0	5229	507	18	4	783	4	EPS15	1	51864825	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09		51864825	197385796	1	39806										
STARD7	0	genome.wustl.edu	37	chr2	96861224	96861224	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	tttggttctggagggtggtgCtggactccagagctctgaaa	15	7	2	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	2	96861224	96861224	C	G	SNP	STARD7	ENST00000337288	human	ensembl	69_37n	-1	known	missense	c.354	p.Q118H	0.039	NULL	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD7	HGNC	ENSG00000084090	453	0	0	183	70	27.67	-	-	-	G	96861224	C	G	96861224	3	3	383	1	0	0	0	0	1	0	0	0	15353	796	28	4	786	4	STARD7	2	96861224	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09		96861224	146338149	2	39807										
TTN	0	genome.wustl.edu	37	chr2	179592332	179592332	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ctgtcacaagcaacatcgtaGtacaagagtcgctaccaaca	7	12	1	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	2	179592332	179592332	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.16241	p.T5414S	0.991	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	92	0	0	56	17	23.29	-	-	-	C	179592332	G	C	179592332	3	2	383	1	0	0	0	0	1	0	0	0	16832	1029	36	4	84736	4	TTN	2	179592332	Missense_Mutation	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09	82731108	179592332	63607041	3	39808										
RXFP3	0	genome.wustl.edu	37	chr5	33937522	33937522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	gtggatctgggctttggccgCgctggcctcgctgcccagtg	16	13	1	0			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	5	33937522	33937522	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	69_37n	1	known	missense	c.677	p.A226V	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631	34	0	0	13	8	38.1	-	-	-	T	33937522	C	T	33937522	3	4	383	1	0	0	0	0	1	0	0	0	13847	768	27	1	679	1	RXFP3	5	33937522	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09		33937522	146977738	4	39809										
FOXK1	0	genome.wustl.edu	37	chr7	4780597	4780597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ccctctgaagatccacatccCggagccggacctccggagca	10	17	1	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	7	4780597	4780597	C	T	SNP	FOXK1	ENST00000328914	human	ensembl	69_37n	1	known	missense	c.689	p.P230L	1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916	65	0	0	28	10	26.32	-	-	-	T	4780597	C	T	4780597	3	4	383	1	0	0	0	0	1	0	0	0	6062	652	23	1	695	1	FOXK1	7	4780597	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09		4780597	154358066	5	39810										
GOT1L1	0	genome.wustl.edu	37	chr8	37792595	37792595	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ccccctagacccttacagttGagtccaagatagccgtgggt	10	13	0	3			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	8	37792595	37792595	G	A	SNP	GOT1L1	ENST00000307599	human	ensembl	69_37n	-1	known	silent	c.1068	p.L356	0.988	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Asp_trans	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154	162	0	0	81	21	20.59	-	-	-	A	37792595	G	A	37792595	2	1	383	1	0	0	0	0	0	0	0	1	6629	1277	45	2		2	GOT1L1	8	37792595	Silent	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09		37792595	108571427	6	39811										
SNX16	0	genome.wustl.edu	37	chr8	82751846	82751846	+	Splice_Site	DEL	C	C	-													0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	acagcagaagtcaatacttaCagtaaatttagctctttctt							TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	8	82751846	82751846	C	-	DEL	SNX16	ENST00000345957	human	ensembl	69_37n	-1	known	splice_site_del	c.375+1	e1+1	1.000	-	-	-	no_errors	SNX16	HGNC	ENSG00000104497	172	0	0	122	17	12.23	-	-	-	-	82751846	C	-	82751846	8	5	383	1	0	1	0	1	0	0	1	0	14976	492	17	0	686	0	SNX16	8	82751846	Splice_Site	DEL	C	TCGA-AR-A1AT-01A-11D-A12Q-09	44959251	82751846	63612176	7	39812										
MAMDC2	0	genome.wustl.edu	37	chr9	72727930	72727930	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	gaatgtgactttgaagaaaaTcatctctgtggctttgtgaa	10	5	2	4			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	9	72727930	72727930	T	C	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	silent	c.525	p.N175	0.943	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	320	0	0	124	42	25.3	-	-	-	C	72727930	T	C	72727930	2	2	383	1	0	0	0	0	0	0	0	1	9274	1432	50	5		5	MAMDC2	9	72727930	Silent	SNP	T	TCGA-AR-A1AT-01A-11D-A12Q-09		72727930	68485501	8	39813										
SARDH	0	genome.wustl.edu	37	chr9	136531942	136531942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	cagccctccggacatggcccAccacttggccgttcctccag	9	19	0	0			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	9	136531942	136531942	A	C	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	missense	c.2546	p.V849G	1.000	pfam_GCV_T_C	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	77	0	0	43	5	10.2	-	-	-	C	136531942	A	C	136531942	3	2	383	1	0	0	0	0	1	0	0	0	13928	159	6	5	218	5	SARDH	9	136531942	Missense_Mutation	SNP	A	TCGA-AR-A1AT-01A-11D-A12Q-09	63804012	136531942	4681489	9	39814										
ZNF239	0	genome.wustl.edu	37	chr10	44052156	44052156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	atgggctaatgtcagttagcGaggatctttcttgtgaaccc	11	8	3	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	10	44052156	44052156	G	A	SNP	ZNF239	ENST00000306006	human	ensembl	69_37n	-1	known	missense	c.1372	p.R458C	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793	138	0	0	59	17	22.37	-	-	-	A	44052156	G	A	44052156	3	1	383	1	0	0	0	0	1	0	0	0	17887	1058	37	1	8	1	ZNF239	10	44052156	Missense_Mutation	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09		44052156	91482591	10	39815										
DNTT	0	genome.wustl.edu	37	chr10	98092128	98092128	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ggattacttttatattatgaCcttgtggagtcaacatttga	8	5	1	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	10	98092128	98092128	C	T	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	silent	c.1134	p.D378	0.984	pfam_Nucleotidyltransferase,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	317	0	0	94	51	35.17	-	-	-	T	98092128	C	T	98092128	2	4	383	1	0	0	0	0	0	0	0	1	4715	506	18	4		4	DNTT	10	98092128	Silent	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09	54039972	98092128	37442619	11	39816										
PCGF6	0	genome.wustl.edu	37	chr10	105107077	105107077	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	aaaaaatgataaaacacagaCtaaattacacttaaaatgta	3	5	0	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	10	105107077	105107077	C	G	SNP	PCGF6	ENST00000490296	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	PCGF6	HGNC	ENSG00000156374	363	0	0	135	46	25.41	-	-	-	G	105107077	C	G	105107077	5	3	383	1	0	0	0	0	0	0	1	0	11651	580	20	4		4	PCGF6	10	105107077	Splice_Site	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09	7014949	105107077	30427670	12	39817										
SPTY2D1	0	genome.wustl.edu	37	chr11	18637556	18637556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	accatggaaattatcctttgTcctcttggccatagctcttg	7	11	2	0			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	11	18637556	18637556	T	C	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	missense	c.265	p.T89A	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	426	0	0	187	80	29.96	-	-	-	C	18637556	T	C	18637556	3	2	383	1	0	0	0	0	1	0	0	0	15217	1667	58	5	1808	5	SPTY2D1	11	18637556	Missense_Mutation	SNP	T	TCGA-AR-A1AT-01A-11D-A12Q-09		18637556	116368960	13	39818										
CDC42BPG	0	genome.wustl.edu	37	chr11	64591956	64591956	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	cagagggcatcaaggagagcTctccaattcaggggataggg	15	8	3	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	11	64591956	64591956	T	G	SNP	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	missense	c.4645	p.S1549R	0.754	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	177	1	0.56	87	29	25	-	-	-	G	64591956	T	G	64591956	3	3	383	1	0	0	0	0	1	0	0	0	3103	1551	54	5	14	5	CDC42BPG	11	64591956	Missense_Mutation	SNP	T	TCGA-AR-A1AT-01A-11D-A12Q-09	45954400	64591956	70414560	14	39819										
MLL	0	genome.wustl.edu	37	chr11	118354912	118354912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ccttaggaaaaaccacctccGgtcaataagcaggagaatgc	9	11	1	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	11	118354912	118354912	G	A	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.4101	p.P1367	0.002	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	220	0	0	81	26	24.3	-	-	-	A	118354912	G	A	118354912	2	1	383	1	0	0	0	0	0	0	0	1	9691	1103	39	1		1	MLL	11	118354912	Silent	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09	53762956	118354912	16651604	15	39820										
PUS7L	0	genome.wustl.edu	37	chr12	44130339	44130339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	atagaatatgcgcatggaatGgggtaaagagaaccatgcct	12	6	0	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	12	44130339	44130339	G	A	SNP	PUS7L	ENST00000344862	human	ensembl	69_37n	-1	known	missense	c.1570	p.H524Y	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317	186	0	0	105	23	17.97	-	-	-	A	44130339	G	A	44130339	3	1	383	1	0	0	0	0	1	0	0	0	12917	1348	47	4	547	4	PUS7L	12	44130339	Missense_Mutation	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09		44130339	89721556	16	39821										
SERPINA1	0	genome.wustl.edu	37	chr14	94847276	94847276	+	Frame_Shift_Del	DEL	T	T	-													0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	tcattttccaggtgctgtagTttcccctcatcaggcaggaa							TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	14	94847276	94847276	T	-	DEL	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	frame_shift_del	c.849	p.K283fs	0.004	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249	238	0	0	111	39	25.66	-	-	-	-	94847276	T	-	94847276	7	5	383	1	0	1	0	1	0	0	0	0	14174	1722	60	0	419	0	SERPINA1	14	94847276	Frame_Shift_Del	DEL	T	TCGA-AR-A1AT-01A-11D-A12Q-09		94847276	12502264	17	39822										
TDRD9	0	genome.wustl.edu	37	chr14	104492006	104492006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	aactgacgctggtgcccttgCccactcacccacatccagac	7	18	1	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	14	104492006	104492006	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	1	known	missense	c.2824	p.P942S	0.864	pfam_Tudor	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	169	0	0	100	30	23.08	-	-	-	T	104492006	C	T	104492006	3	4	383	1	0	0	0	0	1	0	0	0	15831	739	26	4	2926	4	TDRD9	14	104492006	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09	9644730	104492006	2857534	18	39823										
PLCB2	0	genome.wustl.edu	37	chr15	40590117	40590117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	acgacaggatgatgggatagGgggaggtcttaaaggcgctt	17	5	1	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	15	40590117	40590117	G	A	SNP	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	missense	c.1199	p.P400L	0.868	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	324	1	0.31	116	49	29.7	-	-	-	A	40590117	G	A	40590117	3	1	383	1	0	0	0	0	1	0	0	0	12102	1232	43	4	2442	4	PLCB2	15	40590117	Missense_Mutation	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09		40590117	61941275	19	39824										
TNRC6A	0	genome.wustl.edu	37	chr16	24801088	24801088	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	gcctggccagtattagagaaCaatggacttgccctaaaagg	11	9	0	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	16	24801088	24801088	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	silent	c.1125	p.N375	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	137	0	0	77	19	19.79	-	-	-	T	24801088	C	T	24801088	2	4	383	1	0	0	0	0	0	0	0	1	16435	477	17	4		4	TNRC6A	16	24801088	Silent	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09		24801088	65553665	20	39825										
CDH1	0	genome.wustl.edu	37	chr16	68845694	68845694	+	Frame_Shift_Del	DEL	A	A	-													0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	aagatcctgagctccctgacAaaaatatgttcaccattaac							TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	16	68845694	68845694	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.940	p.N315fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	137	0	0	47	24	33.33	-	-	-	-	68845694	A	-	68845694	7	5	383	1	0	1	0	1	0	0	0	0	3124	131	5	0	966	0	CDH1	16	68845694	Frame_Shift_Del	DEL	A	TCGA-AR-A1AT-01A-11D-A12Q-09	44044606	68845694	21509059	21	39826										
SOCS7	0	genome.wustl.edu	37	chr17	36508490	36508490	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ctggtcctggagggcttggaAtcggaggccgagagcctgga	18	9	0	1			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	17	36508490	36508490	A	G	SNP	SOCS7	ENST00000577233	human	ensembl	69_37n	1	known	silent	c.363	p.E121	0.771	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS7	HGNC	ENSG00000174111	8	0	0	4	22	84.62	-	-	-	G	36508490	A	G	36508490	2	3	383	1	0	0	0	0	0	0	0	1	15008	98	4	5		5	SOCS7	17	36508490	Silent	SNP	A	TCGA-AR-A1AT-01A-11D-A12Q-09		36508490	44686720	22	39827										
MUC16	0	genome.wustl.edu	37	chr19	9085518	9085518	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ggatttctttgcttagcagcAgatgtggatgcagctgaaaa	12	6	1	2			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	19	9085518	9085518	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.6297	p.S2099	0.099	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	173	0	0	97	25	20.49	-	-	-	G	9085518	A	G	9085518	2	3	383	1	0	0	0	0	0	0	0	1	10045	175	7	5		5	MUC16	19	9085518	Silent	SNP	A	TCGA-AR-A1AT-01A-11D-A12Q-09		9085518	50043465	23	39828										
ZNF296	0	genome.wustl.edu	37	chr19	45574978	45574978	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	ggtgctgccaggcgtcatgcCgtgcatgcggcggtggcggt	19	11	1	0			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	19	45574978	45574978	C	A	SNP	ZNF296	ENST00000303809	human	ensembl	69_37n	-1	known	missense	c.1309	p.G437C	0.964	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF296	HGNC	ENSG00000170684	52	0	0	22	9	29.03	-	-	-	A	45574978	C	A	45574978	3	1	383	1	0	0	0	0	1	0	0	0	17924	652	23	3	122	3	ZNF296	19	45574978	Missense_Mutation	SNP	C	TCGA-AR-A1AT-01A-11D-A12Q-09	36489460	45574978	13554005	24	39829										
RUNX1	0	genome.wustl.edu	37	chr21	36259157	36259157	+	Frame_Shift_Del	DEL	G	G	-													0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	taccttgaaagcgatgggcaGggtcttgttgcagcgccagt							TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	21	36259157	36259157	G	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.334	p.L112fs	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	57	0	0	22	6	21.43	-	-	-	-	36259157	G	-	36259157	7	5	383	1	0	1	0	1	0	0	0	0	13832	991	35	0	1165	0	RUNX1	21	36259157	Frame_Shift_Del	DEL	G	TCGA-AR-A1AT-01A-11D-A12Q-09		36259157	11870738	25	39830										
RFPL1	0	genome.wustl.edu	37	chr22	29837624	29837624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	tgggtgcatcacacagaatcGgcaagaccttgccgagagat	12	10	1	3			TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	22	29837624	29837624	G	A	SNP	RFPL1	ENST00000354373	human	ensembl	69_37n	1	known	missense	c.467	p.R156Q	0.000	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL1	HGNC	ENSG00000128250	323	0	0	143	58	28.86	-	-	-	A	29837624	G	A	29837624	3	1	383	1	0	0	0	0	1	0	0	0	13336	1116	39	1	473	1	RFPL1	22	29837624	Missense_Mutation	SNP	G	TCGA-AR-A1AT-01A-11D-A12Q-09		29837624	21466942	26	39831										
MYH9	0	genome.wustl.edu	37	chr22	36695005	36695005	+	Frame_Shift_Del	DEL	C	C	-													0.037037037037037	1	1	0.567733990147783	0	0.722570532915361	1	1	0	gcctcatgcttgttcttgagCttggcgaggctcttagattt							TCGA-AR-A1AT-01A-11D-A12Q-09	TCGA-AR-A1AT-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e00d4fa-b951-44d8-8fbf-fc7b9f19772e	f4c41f30-2984-49b6-87a7-e27893a7fc71	22	36695005	36695005	C	-	DEL	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	frame_shift_del	c.3060	p.K1020fs	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	533	0	0	217	71	24.4	-	-	-	-	36695005	C	-	36695005	7	5	383	1	0	1	0	1	0	0	0	0	10114	796	28	0	2894	0	MYH9	22	36695005	Frame_Shift_Del	DEL	C	TCGA-AR-A1AT-01A-11D-A12Q-09	6857381	36695005	14609561	27	39832										
E2F2	0	genome.wustl.edu	37	chr1	23847527	23847527	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	tgccccagctgttgctgcttCccaggtctggtggggtcttc	13	13	2	0			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	23847527	23847527	C	T	SNP	E2F2	ENST00000361729	human	ensembl	69_37n	-1	known	silent	c.615	p.G205	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968	73	0	0	47	23	32.86	-	-	-	T	23847527	C	T	23847527	2	4	384	1	0	0	0	0	0	0	0	1	4902	842	30	2		2	E2F2	1	23847527	Silent	SNP	C	TCGA-AR-A1AU-01A-11D-A12Q-09		23847527	225403094	1	39833										
MYOM3	0	genome.wustl.edu	37	chr1	24390618	24390618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ctcgatcgtcagaaaccatcGctctgtaaattcccttgtcc	6	14	2	1			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	24390618	24390618	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.3575	p.A1192V	0.980	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	169	0	0	86	38	30.65	-	-	-	A	24390618	G	A	24390618	3	1	384	1	0	0	0	0	1	0	0	0	10165	1087	38	1	779	1	MYOM3	1	24390618	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09	543091	24390618	224860003	2	39834										
CACNA2D3	0	genome.wustl.edu	37	chr3	55107522	55107522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	caacctgttcatggtggtggTggacagcagctgcctctgtg	14	10	2	0			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	55107522	55107522	T	C	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.3038	p.V1013A	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	106	0	0	90	16	14.95	-	-	-	C	55107522	T	C	55107522	3	2	384	1	0	0	0	0	1	0	0	0	2575	1696	59	5	3180	5	CACNA2D3	3	55107522	Missense_Mutation	SNP	T	TCGA-AR-A1AU-01A-11D-A12Q-09		55107522	142914908	3	39835										
FBXO40	0	genome.wustl.edu	37	chr3	121342188	121342188	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	cctcctggagagtccacagaGaggtaagtaaacactcattt	9	10	1	2			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	121342188	121342188	G	A	SNP	FBXO40	ENST00000338040	human	ensembl	69_37n	1	known	missense	c.1912	p.E638K	0.962	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833	40	0	0	23	6	20.69	-	-	-	A	121342188	G	A	121342188	3	1	384	1	0	0	0	0	1	0	0	0	5795	943	33	2	1918	2	FBXO40	3	121342188	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09	66234666	121342188	76680242	4	39836										
PCDH12	0	genome.wustl.edu	37	chr5	141334577	141334577	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	cagtgagctcctccacggggTtccgctcggcgaaggcagcc	14	15	0	1			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	5	141334577	141334577	T	G	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.2840	p.N947T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	15	0	0	13	4	23.53	-	-	-	G	141334577	T	G	141334577	3	3	384	1	0	0	0	0	1	0	0	0	11583	1725	60	5	730	5	PCDH12	5	141334577	Missense_Mutation	SNP	T	TCGA-AR-A1AU-01A-11D-A12Q-09		141334577	39580683	5	39837										
MLLT4	0	genome.wustl.edu	37	chr6	168289974	168289974	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	tgatgatgatgagtgtccttTacaaatcttcagggaatggc	11	6	2	4			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	6	168289974	168289974	T	G	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	nonsense	c.977	p.L326*	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	408	0	0	112	45	28.66	-	-	-	G	168289974	T	G	168289974	4	3	384	1	0	0	0	0	0	1	0	0	9700	1764	61	5	1003	5	MLLT4	6	168289974	Nonsense_Mutation	SNP	T	TCGA-AR-A1AU-01A-11D-A12Q-09		168289974	2825093	6	39838										
RPP30	0	genome.wustl.edu	37	chr10	92656100	92656100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	tttgggctctctgaaagtgaCgccaaggctgcggtgtccac	13	11	1	2			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	92656100	92656100	C	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	1	known	silent	c.648	p.D216	1.000	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	237	1	0.42	135	30	18.18	-	-	-	T	92656100	C	T	92656100	2	4	384	1	0	0	0	0	0	0	0	1	13698	535	19	1		1	RPP30	10	92656100	Silent	SNP	C	TCGA-AR-A1AU-01A-11D-A12Q-09		92656100	42878647	7	39839										
PDCD11	0	genome.wustl.edu	37	chr10	105200238	105200238	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	gaagaagaaccagaaggggcAggaggaggtggagatgccca	18	6	0	4			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	105200238	105200238	A	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.4340	p.Q1447L	0.191	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	296	0	0	179	51	22.17	-	-	-	T	105200238	A	T	105200238	3	4	384	1	0	0	0	0	1	0	0	0	11690	188	7	5	4450	5	PDCD11	10	105200238	Missense_Mutation	SNP	A	TCGA-AR-A1AU-01A-11D-A12Q-09	12544138	105200238	30334509	8	39840										
ZNF511	0	genome.wustl.edu	37	chr10	135125374	135125374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ctgagctctttctgaaacccGttctcaacatgtgttcggtg	9	11	3	2			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	135125374	135125374	G	A	SNP	ZNF511	ENST00000359035	human	ensembl	69_37n	1	known	missense	c.709	p.V237I	0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	15	0	0	5	8	61.54	-	-	-	A	135125374	G	A	135125374	3	1	384	1	0	0	0	0	1	0	0	0	18051	1160	40	1		1	ZNF511	10	135125374	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09	29925136	135125374	409373	9	39841										
SLC25A22	0	genome.wustl.edu	37	chr11	793561	793561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	agctgatgtcggaagaagtcGttggctgccagcttgatggc	15	8	0	3			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	11	793561	793561	G	A	SNP	SLC25A22	ENST00000320230	human	ensembl	69_37n	-1	known	silent	c.261	p.N87	0.997	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542	91	0	0	82	15	15.46	-	-	-	A	793561	G	A	793561	2	1	384	1	0	0	0	0	0	0	0	1	14574	1136	40	1		1	SLC25A22	11	793561	Silent	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09		793561	134212955	10	39842										
TUBGCP5	0	genome.wustl.edu	37	chr15	22866738	22866738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	tatctatatcttttgaaaatGttgacacagctaagaagaag	7	5	2	4			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	15	22866738	22866738	G	A	SNP	TUBGCP5	ENST00000283645	human	ensembl	69_37n	1	known	missense	c.2350	p.V784I	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP5	HGNC	ENSG00000153575	271	0	0	135	44	24.58	-	-	-	A	22866738	G	A	22866738	3	1	384	1	0	0	0	0	1	0	0	0	16866	1377	48	4	2416	4	TUBGCP5	15	22866738	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09		22866738	79664654	11	39843										
PLA2G15	0	genome.wustl.edu	37	chr16	68293055	68293055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ccttctccctgcaggagacaAcaaccggatcccagtcatcg	8	16	2	1			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	16	68293055	68293055	A	G	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	1	known	missense	c.734	p.N245S	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	22	0	0	20	8	28.57	-	-	-	G	68293055	A	G	68293055	3	3	384	1	0	0	0	0	1	0	0	0	12066	43	2	5	756	5	PLA2G15	16	68293055	Missense_Mutation	SNP	A	TCGA-AR-A1AU-01A-11D-A12Q-09		68293055	22061698	12	39844										
GPS2	0	genome.wustl.edu	37	chr17	7217447	7217447	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	gtgaacagtcaggctctgctGgtatgcagctgatgttaggg	15	7	2	2			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	7217447	7217447	G	A	SNP	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	423	0	0	112	66	37.08	-	-	-	A	7217447	G	A	7217447	4	1	384	1	0	0	0	0	0	1	0	0	6784	1357	47	4	662	4	GPS2	17	7217447	Nonsense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09		7217447	73977763	13	39845										
MAP2K4	0	genome.wustl.edu	37	chr17	12032570	12032571	+	Frame_Shift_Ins	INS	-	-	TC													0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	taattctgaggaaagggaatINStctccccgagtttcatcaac							TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	12032570	12032571	-	TC	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_ins	c.1039_1040	p.S350fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	277	0	0	92	29	23.97	-	-	-	TC	12032571	-	TC	12032570	7	5	384	1	0	1	1	0	0	0	0	0	9310	1493	52	0	1040	0	MAP2K4	17	12032570	Frame_Shift_Ins	INS	-	TCGA-AR-A1AU-01A-11D-A12Q-09	4815123	12032570	69162640	14	39846										
LLGL1	0	genome.wustl.edu	37	chr17	18145296	18145296	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ctggacattaactggccccgCgatgccacccaggccaggtg	12	15	0	0			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	18145296	18145296	C	T	SNP	LLGL1	ENST00000316843	human	ensembl	69_37n	1	known	silent	c.2865	p.R955	0.000	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	72	0	0	28	16	36.36	-	-	-	T	18145296	C	T	18145296	2	4	384	1	0	0	0	0	0	0	0	1	8889	755	27	1		1	LLGL1	17	18145296	Silent	SNP	C	TCGA-AR-A1AU-01A-11D-A12Q-09	6112726	18145296	63049914	15	39847										
UNC45B	0	genome.wustl.edu	37	chr17	33504550	33504550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ggccccttgtaagactcttgGacacacagagggatgggctt	13	10	1	2			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	33504550	33504550	G	A	SNP	UNC45B	ENST00000268876	human	ensembl	69_37n	1	known	missense	c.2182	p.D728N	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	70	0	0	32	6	15.79	-	-	-	A	33504550	G	A	33504550	3	1	384	1	0	0	0	0	1	0	0	0	17086	1174	41	2	2244	2	UNC45B	17	33504550	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09	15359254	33504550	47690660	16	39848										
NUMBL	0	genome.wustl.edu	37	chr19	41183152	41183152	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	cccacctttcttcttgtccgGggcctctcgctcagcaggcc	9	18	4	0			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	19	41183152	41183152	G	C	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	missense	c.715	p.P239A	0.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	32	0	0	23	4	14.81	-	-	-	C	41183152	G	C	41183152	3	2	384	1	0	0	0	0	1	0	0	0	10825	1232	43	4	1130	4	NUMBL	19	41183152	Missense_Mutation	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09		41183152	17945831	17	39849										
FAM122C	0	genome.wustl.edu	37	chrX	133955536	133955536	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	1	0.574404761904762	0	0.626623376623377	1	1	0	ctcaagccggatgtcactgcGtcacttctccatccccaccc	6	19	4	0			TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	X	133955536	133955536	G	A	SNP	FAM122C	ENST00000495147	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM122C	HGNC	ENSG00000156500	505	1	0.2	214	49	18.63	-	-	-	A	133955536	G	A	133955536	1	1	384	0	1	0	0	0	0	0	0	0	5461	1145	40	1		1	FAM122C	23	133955536	RNA	SNP	G	TCGA-AR-A1AU-01A-11D-A12Q-09		133955536	21315024	18	39850										
EIF3I	0	genome.wustl.edu	37	chr1	32694368	32694369	+	Frame_Shift_Del	DEL	GG	GG	-													0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	tgaacatcagaagactttccGgacagaacgtcctgtcaact							TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	32694368	32694369	GG	-	DEL	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	frame_shift_del	c.680_681	p.R227fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	160	0	0	108	42	27.63	-	-	-	-	32694369	GG	-	32694368	7	5	385	1	0	1	0	1	0	0	0	0	5056	1116	39	0	710	0	EIF3I	1	32694368	Frame_Shift_Del	DEL	GG	TCGA-AR-A1AV-01A-21D-A12Q-09		32694368	216556253	1	39851										
MIER1	0	genome.wustl.edu	37	chr1	67447566	67447568	+	In_Frame_Del	DEL	AAG	AAG	-													0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	tagtaacagccagtctgagaAagaagatggcactgtaagca							TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	67447566	67447568	AAG	-	DEL	MIER1	ENST00000401041	human	ensembl	69_37n	1	known	in_frame_del	c.1334_1336	p.E446in_frame_del	0.998:0.975:1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160	155	0	0	109	29	21.01	-	-	-	-	67447568	AAG	-	67447566	7	5	385	1	0	1	0	1	0	0	0	0	9651	14	1	0	1461	0	MIER1	1	67447566	In_Frame_Del	DEL	AAG	TCGA-AR-A1AV-01A-21D-A12Q-09	34753198	67447566	181803055	2	39852										
FAM40A	0	genome.wustl.edu	37	chr1	110586328	110586328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ctacaaggctgatgactctcGagaagaggaagaggagaatg	14	6	1	6			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	110586328	110586328	G	A	SNP	FAM40A	ENST00000369795	human	ensembl	69_37n	1	known	missense	c.1136	p.R379Q	1.000	NULL	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	78	0	0	75	16	17.58	-	-	-	A	110586328	G	A	110586328	3	1	385	1	0	0	0	0	1	0	0	0	5606	1058	37	1	1174	1	FAM40A	1	110586328	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09	43138762	110586328	138664293	3	39853										
INSRR	0	genome.wustl.edu	37	chr1	156813013	156813013	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	cccgaggcacctcccattcaTcagggacatacactgcaagg	9	15	2	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	156813013	156813013	T	C	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.2909	p.D970G	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	115	1	0.86	235	36	13.28	-	-	-	C	156813013	T	C	156813013	3	2	385	1	0	0	0	0	1	0	0	0	7828	1435	50	5	1007	5	INSRR	1	156813013	Missense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09	46226685	156813013	92437608	4	39854										
B3GNT7	0	genome.wustl.edu	37	chr2	232262638	232262638	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	agaacccgaaagatgtggctGcgcccacgcccatggcctct	11	15	1	2			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	2	232262638	232262638	G	T	SNP	B3GNT7	ENST00000287590	human	ensembl	69_37n	1	known	missense	c.208	p.A70S	0.000	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966	33	0	0	24	8	25	-	-	-	T	232262638	G	T	232262638	3	4	385	1	0	0	0	0	1	0	0	0	1266	1319	46	4	214	4	B3GNT7	2	232262638	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		232262638	10936735	5	39855										
SETD5	0	genome.wustl.edu	37	chr3	9490166	9490166	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	aacggatccaactgtactggCaacgaccctaaacatgttac	7	12	0	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	9490166	9490166	C	A	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.2198	p.A733E	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	200	0	0	176	34	16.19	-	-	-	A	9490166	C	A	9490166	3	1	385	1	0	0	0	0	1	0	0	0	14222	710	25	4	2252	4	SETD5	3	9490166	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		9490166	188532264	6	39856										
RBMS3	0	genome.wustl.edu	37	chr3	29781333	29781333	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	tccacaagaatactaagagaCgctaatggagtcagcagagg	11	8	1	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	29781333	29781333	C	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	silent	c.522	p.D174	0.976	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	359	0	0	135	140	50.91	-	-	-	T	29781333	C	T	29781333	2	4	385	1	0	0	0	0	0	0	0	1	13233	535	19	1		1	RBMS3	3	29781333	Silent	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	20291167	29781333	168241097	7	39857										
PDZRN3	0	genome.wustl.edu	37	chr3	73432563	73432563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	attgtatactctagtgccgtCcggggattttgtgccgtggg	14	8	1	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	73432563	73432563	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.3154	p.D1052N	0.999	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	284	0	0	108	107	49.77	-	-	-	T	73432563	C	T	73432563	3	4	385	1	0	0	0	0	1	0	0	0	11782	855	30	2	50	2	PDZRN3	3	73432563	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	43651230	73432563	124589867	8	39858										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	200	0	0	33	148	81.77	-	-	-	G	178952085	A	G	178952085	3	3	385	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A1AV-01A-21D-A12Q-09	105519522	178952085	19070345	9	39859										
PDGFRA	0	genome.wustl.edu	37	chr4	55152033	55152033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ccaccgtgatctggctgctcGcaacgtcctcctggcacaag	10	16	1	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	55152033	55152033	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.2465	p.R822H	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	159	0	0	90	41	31.3	-	-	-	A	55152033	G	A	55152033	3	1	385	1	0	0	0	0	1	0	0	0	11734	1087	38	1	2531	1	PDGFRA	4	55152033	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		55152033	136002243	10	39860										
PRKG2	0	genome.wustl.edu	37	chr4	82125820	82125820	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ataggtccgggttgttggctCagcagacacgccagcctttg	13	11	1	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	82125820	82125820	C	A	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	nonsense	c.382	p.E128*	1.000	pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	57	0	0	69	14	16.87	-	-	-	A	82125820	C	A	82125820	4	1	385	1	0	0	0	0	0	1	0	0	12604	835	29	2	1978	2	PRKG2	4	82125820	Nonsense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	26973787	82125820	109028456	11	39861										
LRBA	0	genome.wustl.edu	37	chr4	151356833	151356833	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	atcaaatttgcctccttgcaAatttaggaaataagttgtaa	6	6	1	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	151356833	151356833	A	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.6982	p.L2328M	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	129	0	0	67	30	30.61	-	-	-	T	151356833	A	T	151356833	3	4	385	1	0	0	0	0	1	0	0	0	8997	11	1	5	1657	5	LRBA	4	151356833	Missense_Mutation	SNP	A	TCGA-AR-A1AV-01A-21D-A12Q-09	69231013	151356833	39797443	12	39862										
DCHS2	0	genome.wustl.edu	37	chr4	155157976	155157976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ataaccgacttgcttataagGatattctgaatgaaagaact	7	6	1	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	155157976	155157976	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.6463	p.P2155S	0.130	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	128	0	0	60	23	27.71	-	-	-	A	155157976	G	A	155157976	3	1	385	1	0	0	0	0	1	0	0	0	4319	1174	41	2	2291	2	DCHS2	4	155157976	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09	3801143	155157976	35996300	13	39863										
VCAN	0	genome.wustl.edu	37	chr5	82817939	82817939	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	atattgtagccaaggaaacaGaaaccgatattgatagagag	10	5	0	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	5	82817939	82817939	G	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	nonsense	c.3814	p.E1272*	0.844	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	170	0	0	134	26	16.25	-	-	-	T	82817939	G	T	82817939	4	4	385	1	0	0	0	0	0	1	0	0	17235	943	33	2	3836	2	VCAN	5	82817939	Nonsense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		82817939	98097321	14	39864										
BACH2	0	genome.wustl.edu	37	chr6	90660239	90660239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	agcccccgctcccgtcctccGcgtaggaataggaagagcag	12	15	0	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	90660239	90660239	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1586	p.A529V	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	65	0	0	83	22	20.95	-	-	-	A	90660239	G	A	90660239	3	1	385	1	0	0	0	0	1	0	0	0	1288	1087	38	1	951	1	BACH2	6	90660239	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		90660239	80454828	15	39865										
CDC40	0	genome.wustl.edu	37	chr6	110550072	110550072	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	caatcaatggacaaccaaatCttaatttttggagcacagaa	6	8	2	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	110550072	110550072	C	T	SNP	CDC40	ENST00000307731	human	ensembl	69_37n	1	known	silent	c.1455	p.I485	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	133	0	0	90	17	15.6	-	-	-	T	110550072	C	T	110550072	2	4	385	1	0	0	0	0	0	0	0	1	3099	903	32	2		2	CDC40	6	110550072	Silent	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	19889833	110550072	60564995	16	39866										
TRDN	0	genome.wustl.edu	37	chr6	123576256	123576256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	attgtgtaattgaagactttCttttcttgttgagactgtta	8	4	2	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	123576256	123576256	C	T	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.1921	p.E641K	0.569	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	438	0	0	198	127	39.08	-	-	-	T	123576256	C	T	123576256	3	4	385	1	0	0	0	0	1	0	0	0	16564	922	32	2	288	2	TRDN	6	123576256	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	13026184	123576256	47538811	17	39867										
TULP4	0	genome.wustl.edu	37	chr6	158834165	158834165	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gatgcggacggaggcatattCgtgtggattcagtacgaggg	17	6	1	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	158834165	158834165	C	T	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.321	p.F107	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	236	0	0	220	61	21.71	-	-	-	T	158834165	C	T	158834165	2	4	385	1	0	0	0	0	0	0	0	1	16873	883	31	1		1	TULP4	6	158834165	Silent	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	35257909	158834165	12280902	18	39868										
EPB49	0	genome.wustl.edu	37	chr8	21931298	21931298	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	agatggaaaagtcattgccgAtccgaaggaaaacccgctct	10	10	2	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	8	21931298	21931298	A	T	SNP	EPB49	ENST00000265800	human	ensembl	69_37n	1	known	missense	c.787	p.I263F	0.985	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	EPB49	HGNC	ENSG00000158856	195	0	0	74	98	56.98	-	-	-	T	21931298	A	T	21931298	3	4	385	1	0	0	0	0	1	0	0	0	5196	333	12	5	821	5	EPB49	8	21931298	Missense_Mutation	SNP	A	TCGA-AR-A1AV-01A-21D-A12Q-09		21931298	124432724	19	39869										
DNAJB5	0	genome.wustl.edu	37	chr9	34990767	34990767	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	taaaattcagctggagccctTaaaacttcgagcgtggacgc	10	10	1	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	9	34990767	34990767	T	G	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	1	known	nonsense	c.140	p.L47*	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	106	1	0.93	43	45	51.14	-	-	-	G	34990767	T	G	34990767	4	3	385	1	0	0	0	0	0	1	0	0	4658	1764	61	5	142	5	DNAJB5	9	34990767	Nonsense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09		34990767	106222664	20	39870										
GATA3	0	genome.wustl.edu	37	chr10	8115973	8115976	+	Frame_Shift_Del	DEL	CCGC	CCGC	-													0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ccacccctccagcatggtcaCcgccatgggttagagccctg							TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	CCGC	CCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	8115973	8115976	CCGC	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1322_1325	p.A442fs	1.000:0.996:1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	69	0	0	47	35	41.67	-	-	-	-	8115976	CCGC	-	8115973	7	5	385	1	0	1	0	1	0	0	0	0	6305	507	18	0	1340	0	GATA3	10	8115973	Frame_Shift_Del	DEL	CCGC	TCGA-AR-A1AV-01A-21D-A12Q-09		8115973	127418774	21	39871										
PARD3	0	genome.wustl.edu	37	chr10	34620159	34620159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gattatccgcggccgtggacGatggaaaggaatatccccat	12	10	0	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	34620159	34620159	G	A	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.2728	p.R910C	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	189	0	0	135	37	21.39	-	-	-	A	34620159	G	A	34620159	3	1	385	1	0	0	0	0	1	0	0	0	11516	1058	37	1	1405	1	PARD3	10	34620159	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09	26504186	34620159	100914588	22	39872										
EHD1	0	genome.wustl.edu	37	chr11	64622048	64622048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ttgccgttgacaggggacagCgtgtagaagatctcgtcgta	14	8	1	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	11	64622048	64622048	C	T	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.1362	p.T454	0.039	smart_EPS15_homology,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	107	0	0	44	25	36.23	-	-	-	T	64622048	C	T	64622048	2	4	385	1	0	0	0	0	0	0	0	1	5012	755	27	1		1	EHD1	11	64622048	Silent	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		64622048	70384468	23	39873										
SLC2A3	0	genome.wustl.edu	37	chr12	8083112	8083112	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ctcttcttttctgttaatgaGcaaaaatctgggactttcag	7	8	5	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	8083112	8083112	G	C	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	missense	c.637	p.L213V	1.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	361	0	0	224	73	24.58	-	-	-	C	8083112	G	C	8083112	3	2	385	1	0	0	0	0	1	0	0	0	14634	971	34	4	877	4	SLC2A3	12	8083112	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		8083112	125768783	24	39874										
OR6C76	0	genome.wustl.edu	37	chr12	55820958	55820959	+	Frame_Shift_Ins	INS	-	-	A													0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ttctgagaaagatttcccacINSaaaaaaaaaaaacactgatt							TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	55820958	55820959	-	A	INS	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	frame_shift_ins	c.921_922	p.K311fs	0.003:0.016	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	19	0	0	22	4	15.38	-	-	-	A	55820959	-	A	55820958	7	5	385	1	0	1	1	0	0	0	0	0	11273	477	17	0	923	0	OR6C76	12	55820958	Frame_Shift_Ins	INS	-	TCGA-AR-A1AV-01A-21D-A12Q-09	47737846	55820958	78030937	25	39875										
ANKLE2	0	genome.wustl.edu	37	chr12	133312082	133312082	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gaggtggagttttccagagcTtgcgaaaatcttctgcctat	11	8	2	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	133312082	133312082	T	C	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.1610	p.K537R	0.150	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	217	0	0	223	55	19.78	-	-	-	C	133312082	T	C	133312082	3	2	385	1	0	0	0	0	1	0	0	0	633	1609	56	5	1226	5	ANKLE2	12	133312082	Missense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09	77491124	133312082	539813	26	39876										
HTR2A	0	genome.wustl.edu	37	chr13	47469795	47469795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	aatagttagaataatcactaCggctgtcagtaaagcagacc	8	8	2	2			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	13	47469795	47469795	C	T	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	missense	c.247	p.V83I	0.061	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	262	1	0.38	233	60	20.48	-	-	-	T	47469795	C	T	47469795	3	4	385	1	0	0	0	0	1	0	0	0	7495	536	19	1	1180	1	HTR2A	13	47469795	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		47469795	67700083	27	39877										
WDR20	0	genome.wustl.edu	37	chr14	102675094	102675094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ctaccagcttctgaagcaggGagagagctttgccgtgcaca	12	11	1	2			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	14	102675094	102675094	G	A	SNP	WDR20	ENST00000454394	human	ensembl	69_37n	1	known	missense	c.680	p.G227E	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	74	0	0	32	32	50	-	-	-	A	102675094	G	A	102675094	3	1	385	1	0	0	0	0	1	0	0	0	17377	1174	41	2	614	2	WDR20	14	102675094	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		102675094	4674446	28	39878										
DPP8	0	genome.wustl.edu	37	chr15	65792988	65792988	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ttttacgtgataaattccacTaccggcttgaaacagaaatg	7	8	0	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	15	65792988	65792988	T	G	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.550	p.S184R	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	456	0	0	362	96	20.96	-	-	-	G	65792988	T	G	65792988	3	3	385	1	0	0	0	0	1	0	0	0	4767	1522	53	5	2214	5	DPP8	15	65792988	Missense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09		65792988	36738404	29	39879										
CPNE2	0	genome.wustl.edu	37	chr16	57180088	57180088	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gcaggcttccaagctgcccaTgtccatcatcatcgtgggcg	11	14	2	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	57180088	57180088	T	C	SNP	CPNE2	ENST00000290776	human	ensembl	69_37n	1	known	missense	c.1394	p.M465T	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE2	HGNC	ENSG00000140848	34	0	0	27	5	15.62	-	-	-	C	57180088	T	C	57180088	3	2	385	1	0	0	0	0	1	0	0	0	3842	1464	51	5	1448	5	CPNE2	16	57180088	Missense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09		57180088	33174665	30	39880										
NUTF2	0	genome.wustl.edu	37	chr16	67902441	67902441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	aattcagcacagcatcaccgCgcaggaccatcagcccactc	7	17	3	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	67902441	67902441	C	T	SNP	NUTF2	ENST00000219169	human	ensembl	69_37n	1	known	missense	c.209	p.A70V	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NUTF2	HGNC	ENSG00000102898	159	0	0	105	89	45.88	-	-	-	T	67902441	C	T	67902441	3	4	385	1	0	0	0	0	1	0	0	0	10852	768	27	1	219	1	NUTF2	16	67902441	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09	10722353	67902441	22452312	31	39881										
SEPT4	0	genome.wustl.edu	37	chr17	56603076	56603076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	cttcagcaccaagaagtttcCggtcccggtacagatcagtg	10	12	2	2			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	17	56603076	56603076	C	T	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	missense	c.563	p.R188Q	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	251	0	0	279	75	21.13	-	-	-	T	56603076	C	T	56603076	3	4	385	1	0	0	0	0	1	0	0	0	14154	652	23	1	1039	1	SEPT4	17	56603076	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		56603076	24592134	32	39882										
TAF4B	0	genome.wustl.edu	37	chr18	23915146	23915146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	tttcctttgatagagtcgttCtaataaagaagatccagaac	7	7	1	5			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	18	23915146	23915146	C	G	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	missense	c.2267	p.S756C	1.000	pfam_TAF4	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	360	0	0	128	74	36.45	-	-	-	G	23915146	C	G	23915146	3	3	385	1	0	0	0	0	1	0	0	0	15619	913	32	2	2317	2	TAF4B	18	23915146	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		23915146	54162102	33	39883										
ANKLE1	0	genome.wustl.edu	37	chr19	17394278	17394278	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	ggagctgaggacccagcctcGgacactcccccctgggctgg	14	16	0	1			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	19	17394278	17394278	G	T	SNP	ANKLE1	ENST00000404261	human	ensembl	69_37n	1	known	silent	c.705	p.S235	0.000	superfamily_Lactate_DH/Glyco_Ohase_4_C	pfam_Ankyrin_rpt,pfam_LEM,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM	-	no_errors	ANKLE1	HGNC	ENSG00000160117	24	0	0	28	9	24.32	-	-	-	T	17394278	G	T	17394278	2	4	385	1	0	0	0	0	0	0	0	1	632	1103	39	3		3	ANKLE1	19	17394278	Silent	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		17394278	41734705	34	39884										
SIRPG	0	genome.wustl.edu	37	chr20	1616960	1616960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	taccaccctggctgtgctgcGgatgctgtaggccacactct	11	14	1	0			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	20	1616960	1616960	G	A	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.622	p.R208C	0.878	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	385	0	0	316	92	22.49	-	-	-	A	1616960	G	A	1616960	3	1	385	1	0	0	0	0	1	0	0	0	14425	1116	39	1	553	1	SIRPG	20	1616960	Missense_Mutation	SNP	G	TCGA-AR-A1AV-01A-21D-A12Q-09		1616960	61408560	35	39885										
GRIK1	0	genome.wustl.edu	37	chr21	31023532	31023532	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	tgatggatgacacgtgagggTtgtcaatgttaagcagccga	14	6	1	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	21	31023532	31023532	T	C	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.860	p.N287S	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	103	0	0	78	51	39.23	-	-	-	C	31023532	T	C	31023532	3	2	385	1	0	0	0	0	1	0	0	0	6824	1725	60	5	2104	5	GRIK1	21	31023532	Missense_Mutation	SNP	T	TCGA-AR-A1AV-01A-21D-A12Q-09		31023532	17106363	36	39886										
MED15	0	genome.wustl.edu	37	chr22	20937198	20937198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.841065505936394	1.14431239388795	3.62365591397849	0.852624920936116	1	1	0	gccctcccagagcccagtgaCggcgcggaccccacagaact	11	18	0	3			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	22	20937198	20937198	C	T	SNP	MED15	ENST00000263205	human	ensembl	69_37n	1	known	missense	c.1481	p.T494M	0.971	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	97	0	0	39	29	42.65	-	-	-	T	20937198	C	T	20937198	3	4	385	1	0	0	0	0	1	0	0	0	9504	536	19	1	1523	1	MED15	22	20937198	Missense_Mutation	SNP	C	TCGA-AR-A1AV-01A-21D-A12Q-09		20937198	30367368	37	39887										
MPZL1	0	genome.wustl.edu	37	chr1	167741689	167741689	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	accctcctgacatcgttgtcCagcctggacacattaggctc	8	15	0	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	167741689	167741689	C	T	SNP	MPZL1	ENST00000359523	human	ensembl	69_37n	1	known	nonsense	c.436	p.Q146*	0.446	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL1	HGNC	ENSG00000197965	164	0	0	210	33	13.58	-	-	-	T	167741689	C	T	167741689	4	4	386	1	0	0	0	0	0	1	0	0	9821	595	21	4	446	4	MPZL1	1	167741689	Nonsense_Mutation	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09		167741689	81508932	1	39888										
RASAL2	0	genome.wustl.edu	37	chr1	178411925	178411925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	tgatgataccctctttgctcGtacaaccagcaagaccaaag	7	12	1	3			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	178411925	178411925	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.1043	p.R348H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	216	0	0	165	58	26.01	-	-	-	A	178411925	G	A	178411925	3	1	386	1	0	0	0	0	1	0	0	0	13147	1145	40	1	1090	1	RASAL2	1	178411925	Missense_Mutation	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09	10670236	178411925	70838696	2	39889										
BRPF1	0	genome.wustl.edu	37	chr3	9783065	9783065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	gcggctccggcatgacttggAgcgagctcggctgctcgtgg	17	12	0	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	9783065	9783065	A	C	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	missense	c.1796	p.E599A	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	69	0	0	84	18	17.48	-	-	-	C	9783065	A	C	9783065	3	2	386	1	0	0	0	0	1	0	0	0	1528	304	11	5	1810	5	BRPF1	3	9783065	Missense_Mutation	SNP	A	TCGA-AR-A1AW-01A-21D-A12Q-09		9783065	188239365	3	39890										
TRANK1	0	genome.wustl.edu	37	chr3	36879889	36879889	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	cagcctctcgcacagctgggCagagagctggaactccttgg	13	13	1	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	36879889	36879889	C	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.5359	p.A1787S	0.999	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	150	0	0	144	28	16.28	-	-	-	A	36879889	C	A	36879889	3	1	386	1	0	0	0	0	1	0	0	0	16550	710	25	4	3438	4	TRANK1	3	36879889	Missense_Mutation	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09	27096824	36879889	161142541	4	39891										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	213	0	0	172	41	19.25	-	-	-	G	178952085	A	G	178952085	3	3	386	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A1AW-01A-21D-A12Q-09	142072196	178952085	19070345	5	39892										
HLA-A	0	genome.wustl.edu	37	chr6	29910604	29910604	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	ggggagccccgcttcatcgcCgtgggctacgtggacgacac	15	14	1	0			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	29910604	29910604	C	A	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	silent	c.144	p.A48	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	17	0	0	49	14	22.22	-	-	-	A	29910604	C	A	29910604	2	1	386	1	0	0	0	0	0	0	0	1	7246	639	23	3		3	HLA-A	6	29910604	Silent	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09		29910604	141204463	6	39893										
ELOVL5	0	genome.wustl.edu	37	chr6	53156612	53156612	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	agacagcagtgtgagtccaaGgttatacaccactaaaatcc	8	10	0	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	53156612	53156612	G	A	SNP	ELOVL5	ENST00000370918	human	ensembl	69_37n	-1	known	splice_site	c.206+2	e2+2	1.000	-	-	-	no_errors	ELOVL5	HGNC	ENSG00000012660	172	0	0	196	28	12.5	-	-	-	A	53156612	G	A	53156612	5	1	386	1	0	0	0	0	0	0	1	0	5114	1000	35	4	715	4	ELOVL5	6	53156612	Splice_Site	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09	23246008	53156612	117958455	7	39894										
SOCS4	0	genome.wustl.edu	37	chr14	55510028	55510028	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	gcatcgatttttaggccgatCtcttaaacagaaactgcaag	8	9	1	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	14	55510028	55510028	C	A	SNP	SOCS4	ENST00000339298	human	ensembl	69_37n	1	known	missense	c.269	p.S90Y	1.000	pfam_SOCS	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008	146	0	0	144	22	13.25	-	-	-	A	55510028	C	A	55510028	3	1	386	1	0	0	0	0	1	0	0	0	15005	913	32	2	271	2	SOCS4	14	55510028	Missense_Mutation	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09		55510028	51839512	8	39895										
BCMO1	0	genome.wustl.edu	37	chr16	81303769	81303769	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	tgtgtcctttttcagacttaTatccacatcatcgaccaaag	5	11	2	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	16	81303769	81303769	T	A	SNP	BCMO1	ENST00000258168	human	ensembl	69_37n	1	known	nonsense	c.849	p.Y283*	0.965	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	99	0	0	83	12	12.63	-	-	-	A	81303769	T	A	81303769	4	1	386	1	0	0	0	0	0	1	0	0	1388	1413	49	5	875	5	BCMO1	16	81303769	Nonsense_Mutation	SNP	T	TCGA-AR-A1AW-01A-21D-A12Q-09		81303769	9050984	9	39896										
TP53	0	genome.wustl.edu	37	chr17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	cccaggacaggcacaaacacGcacctcaaagctgttccgtc	8	16	1	0			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	135	0	0	137	77	35.98	-	-	-	A	7577121	G	A	7577121	3	1	386	1	0	0	0	0	1	0	0	0	16477	1087	38	1	469	1	TP53	17	7577121	Missense_Mutation	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09		7577121	73618089	10	39897										
NF1	0	genome.wustl.edu	37	chr17	29586058	29586058	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	tttattgtgtagatacttcaGagtattgccaatcatgttct	7	6	3	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	29586058	29586058	G	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.4341	p.Q1447H	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	246	0	0	185	66	26.29	-	-	-	C	29586058	G	C	29586058	3	2	386	1	0	0	0	0	1	0	0	0	10428	933	33	2	4532	2	NF1	17	29586058	Missense_Mutation	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09	22008937	29586058	51609152	11	39898										
BAHCC1	0	genome.wustl.edu	37	chr17	79414760	79414760	+	Frame_Shift_Del	DEL	G	G	-													0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	ctcagcccccagcggcctctGggccccccagcacagtcccc							TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	79414760	79414760	G	-	DEL	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	frame_shift_del	c.3862	p.S1291fs	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	11	0	0	27	9	25	-	-	-	-	79414760	G	-	79414760	7	5	386	1	0	1	0	1	0	0	0	0	1300	1348	47	0	3735	0	BAHCC1	17	79414760	Frame_Shift_Del	DEL	G	TCGA-AR-A1AW-01A-21D-A12Q-09	49828702	79414760	1780450	12	39899										
MUC16	0	genome.wustl.edu	37	chr19	9007506	9007506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	cttgtggggctggggacgggGgatggagtccctgaggttcc	20	8	0	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	9007506	9007506	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.39462	p.S13154	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	109	0	0	377	51	11.92	-	-	-	A	9007506	G	A	9007506	2	1	386	1	0	0	0	0	0	0	0	1	10045	1219	43	4		4	MUC16	19	9007506	Silent	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09		9007506	50121477	13	39900										
LILRA1	0	genome.wustl.edu	37	chr19	55107152	55107152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	gcagccaggtcctatagtggCccctggggagagcctgaccc	14	14	0	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	55107152	55107152	C	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.710	p.A237V	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	210	0	0	249	65	20.63	-	-	-	T	55107152	C	T	55107152	3	4	386	1	0	0	0	0	1	0	0	0	8839	739	26	4	728	4	LILRA1	19	55107152	Missense_Mutation	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09	46099646	55107152	4021831	14	39901										
GNAS	0	genome.wustl.edu	37	chr20	57485019	57485019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	cttgtagatggctgcgcaccAtctctgtgatcctgttcctc	9	13	1	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	20	57485019	57485019	A	G	SNP	GNAS	ENST00000354359	human	ensembl	69_37n	1	known	missense	c.856	p.I286V	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	103	0	0	97	25	20.49	-	-	-	G	57485019	A	G	57485019	3	3	386	1	0	0	0	0	1	0	0	0	6562	217	8	5	3712	5	GNAS	20	57485019	Missense_Mutation	SNP	A	TCGA-AR-A1AW-01A-21D-A12Q-09		57485019	5540501	15	39902										
PCDH19	0	genome.wustl.edu	37	chrX	99662740	99662740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	gtcgatctgaaagagctcgcGcgtgcggtcgttgacgtagc	15	10	1	3			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99662740	99662740	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.856	p.R286C	0.115	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	107	0	0	92	12	11.54	-	-	-	A	99662740	G	A	99662740	3	1	386	1	0	0	0	0	1	0	0	0	11587	1087	38	1	2614	1	PCDH19	23	99662740	Missense_Mutation	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09		99662740	55607820	16	39903										
SYTL4	0	genome.wustl.edu	37	chrX	99936233	99936233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	agaaaactcactctttttccGgtcacctccaacaggggttt	7	12	3	1			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99936233	99936233	G	A	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	missense	c.1555	p.R519W	0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	134	0	0	168	26	13.4	-	-	-	A	99936233	G	A	99936233	3	1	386	1	0	0	0	0	1	0	0	0	15577	1115	39	1	482	1	SYTL4	23	99936233	Missense_Mutation	SNP	G	TCGA-AR-A1AW-01A-21D-A12Q-09	273493	99936233	55334327	17	39904										
PHF6	0	genome.wustl.edu	37	chrX	133559244	133559244	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	attgtagactatactgtaaaAatcatagtggaaatgatgag	9	3	1	3			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	133559244	133559244	A	T	SNP	PHF6	ENST00000394292	human	ensembl	69_37n	1	known	missense	c.985	p.N329Y	1.000	smart_Znf_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF6	HGNC	ENSG00000156531	400	0	0	319	59	15.61	-	-	-	T	133559244	A	T	133559244	3	4	386	1	0	0	0	0	1	0	0	0	11912	14	1	5	1121	5	PHF6	23	133559244	Missense_Mutation	SNP	A	TCGA-AR-A1AW-01A-21D-A12Q-09	33623011	133559244	21711316	18	39905										
MAGEA11	0	genome.wustl.edu	37	chrX	148798316	148798316	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	1	0.953986987641084	0.866666666666667	4.33333333333333	0	1	1	0	ttcctgtggggtccaagggcCcacgctgagaccagcaagat	13	12	0	2			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	148798316	148798316	C	G	SNP	MAGEA11	ENST00000355220	human	ensembl	69_37n	1	known	silent	c.1170	p.A390	0.116	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	50	0	0	69	9	11.54	-	-	-	G	148798316	C	G	148798316	2	3	386	1	0	0	0	0	0	0	0	1	9232	610	22	4		4	MAGEA11	23	148798316	Silent	SNP	C	TCGA-AR-A1AW-01A-21D-A12Q-09	15239072	148798316	6472244	19	39906										
KDM4A	0	genome.wustl.edu	37	chr1	44137307	44137307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	ctgcgtctgtagggggacgcCttgtcttctcaggctccaaa	12	12	3	0			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	1	44137307	44137307	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.1495	p.L499F	0.950	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	268	0	0	216	24	10	-	-	-	T	44137307	C	T	44137307	3	4	387	1	0	0	0	0	1	0	0	0	8182	681	24	4	1533	4	KDM4A	1	44137307	Missense_Mutation	SNP	C	TCGA-AR-A1AX-01A-11D-A12Q-09		44137307	205113314	1	39907										
RGPD3	0	genome.wustl.edu	37	chr2	107041128	107041128	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	tacttgttctctttgcatcaGcattcttactttgccattga	5	10	3	1			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	2	107041128	107041128	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.3295	p.L1099	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	279	0	0	177	30	14.49	-	-	-	A	107041128	G	A	107041128	2	1	387	1	0	0	0	0	0	0	0	1	13370	962	34	4		4	RGPD3	2	107041128	Silent	SNP	G	TCGA-AR-A1AX-01A-11D-A12Q-09		107041128	136158245	2	39908										
PDCD6IP	0	genome.wustl.edu	37	chr3	33855109	33855109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	aggttcactttttggaggctCtgtaaaactgggtatgtaat	11	5	2	0			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	3	33855109	33855109	C	T	SNP	PDCD6IP	ENST00000457054	human	ensembl	69_37n	1	known	missense	c.323	p.S108F	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	496	0	0	241	28	10.41	-	-	-	T	33855109	C	T	33855109	3	4	387	1	0	0	0	0	1	0	0	0	11697	913	32	2	333	2	PDCD6IP	3	33855109	Missense_Mutation	SNP	C	TCGA-AR-A1AX-01A-11D-A12Q-09		33855109	164167321	3	39909										
APC	0	genome.wustl.edu	37	chr5	112177283	112177283	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	agccccctgactcacagggaGaaccaagtaaacctcaagca	8	14	2	2			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	112177283	112177283	G	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.5992	p.E1998K	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	238	0	0	202	27	11.79	-	-	-	A	112177283	G	A	112177283	3	1	387	1	0	0	0	0	1	0	0	0	764	943	33	2	6050	2	APC	5	112177283	Missense_Mutation	SNP	G	TCGA-AR-A1AX-01A-11D-A12Q-09		112177283	68737977	4	39910										
ARHGAP26	0	genome.wustl.edu	37	chr5	142150475	142150475	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	gaagtcactcataagcgcgcTcaagagtgagtgtcccgagc	12	11	3	2			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	142150475	142150475	T	C	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.149	p.L50P	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	38	0	0	26	4	12.9	-	-	-	C	142150475	T	C	142150475	3	2	387	1	0	0	0	0	1	0	0	0	877	1551	54	5	151	5	ARHGAP26	5	142150475	Missense_Mutation	SNP	T	TCGA-AR-A1AX-01A-11D-A12Q-09	29973192	142150475	38764785	5	39911										
CARD16	0	genome.wustl.edu	37	chr11	104915136	104915136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	tacctgctgagagtcccagcGtctctgccaggtaactgtct	10	13	2	1			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	11	104915136	104915136	G	A	SNP	CARD16	ENST00000375706	human	ensembl	69_37n	-1	known	missense	c.257	p.T86M	0.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD16	HGNC	ENSG00000204397	320	0	0	327	42	11.35	-	-	-	A	104915136	G	A	104915136	3	1	387	1	0	0	0	0	1	0	0	0	2672	1145	40	1	368	1	CARD16	11	104915136	Missense_Mutation	SNP	G	TCGA-AR-A1AX-01A-11D-A12Q-09		104915136	30091380	6	39912										
SYNE2	0	genome.wustl.edu	37	chr14	64557671	64557671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	tgaggttgccccaaacaggaAtgaaacctctgcctgtgttt	10	10	1	2			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	14	64557671	64557671	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.11881	p.M3961V	0.003	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	161	0	0	80	11	12.09	-	-	-	G	64557671	A	G	64557671	3	3	387	1	0	0	0	0	1	0	0	0	15538	101	4	5	12115	5	SYNE2	14	64557671	Missense_Mutation	SNP	A	TCGA-AR-A1AX-01A-11D-A12Q-09		64557671	42791869	7	39913										
SLC1A6	0	genome.wustl.edu	37	chr19	15063812	15063812	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	ccgacgtaagcacaatgaccAtggtgaccagacccgcctgg	11	14	0	3			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	15063812	15063812	A	G	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.1427	p.M476T	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	61	0	0	69	13	15.85	-	-	-	G	15063812	A	G	15063812	3	3	387	1	0	0	0	0	1	0	0	0	14525	217	8	5	275	5	SLC1A6	19	15063812	Missense_Mutation	SNP	A	TCGA-AR-A1AX-01A-11D-A12Q-09		15063812	44065171	8	39914										
ZNF565	0	genome.wustl.edu	37	chr19	36673496	36673496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	ttcggtaagttgtgaactacGaataaaggccattccacact	8	9	0	1			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	36673496	36673496	G	A	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	missense	c.1372	p.R458C	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	249	0	0	263	33	11.15	-	-	-	A	36673496	G	A	36673496	3	1	387	1	0	0	0	0	1	0	0	0	18092	1058	37	1	131	1	ZNF565	19	36673496	Missense_Mutation	SNP	G	TCGA-AR-A1AX-01A-11D-A12Q-09	21609684	36673496	22455487	9	39915										
PRKD2	0	genome.wustl.edu	37	chr19	47204110	47204110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	cactggcgtggagcgcattcTctgagtgggagccagggatg	17	9	1	1			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	47204110	47204110	T	C	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1067	p.E356G	0.854	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	52	0	0	57	14	19.72	-	-	-	C	47204110	T	C	47204110	3	2	387	1	0	0	0	0	1	0	0	0	12600	1551	54	5	1617	5	PRKD2	19	47204110	Missense_Mutation	SNP	T	TCGA-AR-A1AX-01A-11D-A12Q-09	10530614	47204110	11924873	10	39916										
PHACTR3	0	genome.wustl.edu	37	chr20	58322833	58322833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	cgctggagaagaagatggccGgcaggcaaggccgagaggag	19	8	0	4			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	20	58322833	58322833	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	missense	c.301	p.G101S	0.037	smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	255	0	0	269	31	10.3	-	-	-	A	58322833	G	A	58322833	3	1	387	1	0	0	0	0	1	0	0	0	11885	1116	39	1	311	1	PHACTR3	20	58322833	Missense_Mutation	SNP	G	TCGA-AR-A1AX-01A-11D-A12Q-09		58322833	4702687	11	39917										
DMD	0	genome.wustl.edu	37	chrX	31525503	31525503	+	Frame_Shift_Del	DEL	A	A	-													0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	aaccttccagggatctcaggAttttttggctgttttcatcc							TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	X	31525503	31525503	A	-	DEL	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	frame_shift_del	c.8285	p.I2762fs	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	667	0	0	470	77	13.7	-	-	-	-	31525503	A	-	31525503	7	5	387	1	0	1	0	1	0	0	0	0	4616	333	12	0	2982	0	DMD	23	31525503	Frame_Shift_Del	DEL	A	TCGA-AR-A1AX-01A-11D-A12Q-09		31525503	123745057	12	39918										
MAGIX	0	genome.wustl.edu	37	chrX	49021218	49021218	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.560366546294671	2.11428571428571	NA	2.11428571428571	0.333333333333333	0.930327025915261	0	cagcaccgttggttagagacAtgtaacgcacctccccaatt	8	13	0	1			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	X	49021218	49021218	A	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	1	known	silent	c.297	p.T99	0.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	93	0	0	107	16	12.8	-	-	-	T	49021218	A	T	49021218	2	4	387	1	0	0	0	0	0	0	0	1	9264	204	8	5		5	MAGIX	23	49021218	Silent	SNP	A	TCGA-AR-A1AX-01A-11D-A12Q-09	17495715	49021218	106249342	13	39919										
SERINC2	0	genome.wustl.edu	37	chr1	31898637	31898637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	acccagtctggttctacttcGgcgtcgtgggctccttcctc	10	15	2	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	31898637	31898637	G	A	SNP	SERINC2	ENST00000373710	human	ensembl	69_37n	1	known	missense	c.514	p.G172S	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC2	HGNC	ENSG00000168528	38	0	0	255	145	36.16	-	-	-	A	31898637	G	A	31898637	3	1	388	1	0	0	0	0	1	0	0	0	14168	1116	39	1	505	1	SERINC2	1	31898637	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		31898637	217351984	1	39920										
ABCD3	0	genome.wustl.edu	37	chr1	94953135	94953135	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tttcattttgtttcggttttCaatgggcttcattgatagta	8	5	3	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	94953135	94953135	C	T	SNP	ABCD3	ENST00000454898	human	ensembl	69_37n	1	known	missense	c.1007	p.S336L	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528	163	0	0	239	167	41.13	-	-	-	T	94953135	C	T	94953135	3	4	388	1	0	0	0	0	1	0	0	0	62	838	29	2	1008	2	ABCD3	1	94953135	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	63054498	94953135	154297486	2	39921										
LELP1	0	genome.wustl.edu	37	chr1	153177464	153177464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	acatgcttgcccacctccctGccctcccccagagtgaggca	8	19	0	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	153177464	153177464	G	A	SNP	LELP1	ENST00000368747	human	ensembl	69_37n	1	known	missense	c.281	p.C94Y	0.598	NULL	NULL	-	no_errors	LELP1	HGNC	ENSG00000203784	18	0	0	80	114	54.81	-	-	-	A	153177464	G	A	153177464	3	1	388	1	0	0	0	0	1	0	0	0	8772	1319	46	4	283	4	LELP1	1	153177464	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	58224329	153177464	96073157	3	39922										
TOMM40L	0	genome.wustl.edu	37	chr1	161198536	161198536	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	agtggagtttgaggcaaacaCaaggctacaagacacaacat	10	8	0	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	161198536	161198536	C	G	SNP	TOMM40L	ENST00000367987	human	ensembl	69_37n	1	known	missense	c.716	p.T239R	1.000	pfam_Porin_Euk	pfam_Porin_Euk	-	no_errors	TOMM40L	HGNC	ENSG00000158882	59	0	0	374	109	22.52	-	-	-	G	161198536	C	G	161198536	3	3	388	1	0	0	0	0	1	0	0	0	16454	478	17	4	746	4	TOMM40L	1	161198536	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	8021072	161198536	88052085	4	39923										
DUSP27	0	genome.wustl.edu	37	chr1	167095632	167095632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	aggagaaggaggaggagagcGacgctggctcctcggtgggg	21	7	0	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	167095632	167095632	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.1264	p.D422N	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	10	0	0	33	38	53.52	-	-	-	A	167095632	G	A	167095632	3	1	388	1	0	0	0	0	1	0	0	0	4859	1058	37	1	1282	1	DUSP27	1	167095632	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	5897096	167095632	82154989	5	39924										
TOR1AIP2	0	genome.wustl.edu	37	chr1	179816677	179816677	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	ggtttgttctcaccatagctCcaaaaaccctttttattaat	4	10	1	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	1	179816677	179816677	C	A	SNP	TOR1AIP2	ENST00000367612	human	ensembl	69_37n	-1	known	missense	c.648	p.W216C	0.004	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905	263	0	0	913	672	42.4	-	-	-	A	179816677	C	A	179816677	3	1	388	1	0	0	0	0	1	0	0	0	16469	856	30	2	772	2	TOR1AIP2	1	179816677	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	12721045	179816677	69433944	6	39925										
VIT	0	genome.wustl.edu	37	chr2	36994428	36994428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gccacaggagccaggagatgGgtcagtaggtagaccatgtg	16	8	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	2	36994428	36994428	G	A	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	missense	c.679	p.D227N	0.983	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	25	0	0	145	82	35.96	-	-	-	A	36994428	G	A	36994428	3	1	388	1	0	0	0	0	1	0	0	0	17268	1246	43	4	826	4	VIT	2	36994428	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		36994428	206204945	7	39926										
REG1B	0	genome.wustl.edu	37	chr2	79312688	79312688	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gatccagtgtcccaggacttGtaggagaccagggacccact	12	12	0	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	2	79312688	79312688	G	T	SNP	REG1B	ENST00000305089	human	ensembl	69_37n	-1	known	nonsense	c.363	p.Y121*	0.158	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	-	no_errors	REG1B	HGNC	ENSG00000172023	58	0	0	180	101	35.94	-	-	-	T	79312688	G	T	79312688	4	4	388	1	0	0	0	0	0	1	0	0	13294	1372	48	4	145	4	REG1B	2	79312688	Nonsense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	42318260	79312688	163886685	8	39927										
SEMA3F	0	genome.wustl.edu	37	chr3	50211374	50211374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gacctgcacgacatcaaccgCgagcccctcattgtaagggc	10	15	2	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	50211374	50211374	C	T	SNP	SEMA3F	ENST00000002829	human	ensembl	69_37n	1	known	silent	c.261	p.R87	0.055	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3F	HGNC	ENSG00000001617	33	0	0	249	59	19.09	-	-	-	T	50211374	C	T	50211374	2	4	388	1	0	0	0	0	0	0	0	1	14117	755	27	1		1	SEMA3F	3	50211374	Silent	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09		50211374	147811056	9	39928										
FEZF2	0	genome.wustl.edu	37	chr3	62356997	62356997	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gctgcggttgaacgctttgcCgcactggttgcatttatgtg	13	9	0	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	62356997	62356997	C	A	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	missense	c.1015	p.G339C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	42	0	0	225	136	37.67	-	-	-	A	62356997	C	A	62356997	3	1	388	1	0	0	0	0	1	0	0	0	5872	652	23	3	372	3	FEZF2	3	62356997	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	12145623	62356997	135665433	10	39929										
ZNF654	0	genome.wustl.edu	37	chr3	88188575	88188575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	ggaaatttagaaacagaggaCttatgcagaagcatttgaag	11	4	0	4			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	88188575	88188575	C	T	SNP	ZNF654	ENST00000309495	human	ensembl	69_37n	1	known	missense	c.115	p.L39F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105	104	0	0	269	130	32.58	-	-	-	T	88188575	C	T	88188575	3	4	388	1	0	0	0	0	1	0	0	0	18163	565	20	4	117	4	ZNF654	3	88188575	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	25831578	88188575	109833855	11	39930										
NAA50	0	genome.wustl.edu	37	chr3	113440684	113440684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	ctgcagcacatgagcatctgCgggctctatcctcttatagt	9	12	3	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	113440684	113440684	C	T	SNP	NAA50	ENST00000240922	human	ensembl	69_37n	-1	known	missense	c.433	p.A145T	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA50	HGNC	ENSG00000121579	173	0	0	516	109	17.44	-	-	-	T	113440684	C	T	113440684	3	4	388	1	0	0	0	0	1	0	0	0	10198	768	27	1	80	1	NAA50	3	113440684	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	25252109	113440684	84581746	12	39931										
EEFSEC	0	genome.wustl.edu	37	chr3	128060108	128060108	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gtgaagtccatgcagatgttCcacatgcccatcacttcagc	8	13	2	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	128060108	128060108	C	A	SNP	EEFSEC	ENST00000254730	human	ensembl	69_37n	1	known	missense	c.819	p.F273L	0.996	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EEFSEC	HGNC	ENSG00000132394	18	0	0	85	76	46.91	-	-	-	A	128060108	C	A	128060108	3	1	388	1	0	0	0	0	1	0	0	0	4966	854	30	2	837	2	EEFSEC	3	128060108	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	14619424	128060108	69962322	13	39932										
AADAC	0	genome.wustl.edu	37	chr3	151532014	151532014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tagcatattatatttatacgCctctcccagataacgttgag	6	9	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	3	151532014	151532014	C	T	SNP	AADAC	ENST00000232892	human	ensembl	69_37n	1	known	missense	c.64	p.P22S	0.714	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771	68	0	0	160	78	32.77	-	-	-	T	151532014	C	T	151532014	3	4	388	1	0	0	0	0	1	0	0	0	10	739	26	4	66	4	AADAC	3	151532014	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	23471906	151532014	46490416	14	39933										
AFP	0	genome.wustl.edu	37	chr4	74319576	74319576	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	caggcctgttggagaaatgcTgccaaggccaggaacaggaa	14	9	0	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	4	74319576	74319576	T	A	SNP	AFP	ENST00000395792	human	ensembl	69_37n	1	known	missense	c.1747	p.C583S	1.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Alpha-fetoprotein,prints_Serum_albumin	-	no_errors	AFP	HGNC	ENSG00000081051	31	0	0	50	81	61.83	-	-	-	A	74319576	T	A	74319576	3	1	388	1	0	0	0	0	1	0	0	0	363	1580	55	5	1797	5	AFP	4	74319576	Missense_Mutation	SNP	T	TCGA-AR-A1AY-01A-21D-A12Q-09		74319576	116834700	15	39934										
AFF1	0	genome.wustl.edu	37	chr4	88052306	88052307	+	Frame_Shift_Del	DEL	AG	AG	-													0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	attgagtgcggaattgccacAgagtctgaaagccagtcatc							TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	4	88052306	88052307	AG	-	DEL	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	frame_shift_del	c.3036_3037	p.E1013fs	0.857:1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	103	0	0	188	156	45.35	-	-	-	-	88052307	AG	-	88052306	7	5	388	1	0	1	0	1	0	0	0	0	356	175	7	0	3119	0	AFF1	4	88052306	Frame_Shift_Del	DEL	AG	TCGA-AR-A1AY-01A-21D-A12Q-09	13732730	88052306	103101970	16	39935										
PCDHA8	0	genome.wustl.edu	37	chr5	140222367	140222367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gacgcggacgcgcaggagaaCgcgctggtgtcctactcgct	15	13	0	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	5	140222367	140222367	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	silent	c.1461	p.N487	0.912	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	9	0	0	54	22	28.95	-	-	-	T	140222367	C	T	140222367	2	4	388	1	0	0	0	0	0	0	0	1	11603	535	19	1		1	PCDHA8	5	140222367	Silent	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09		140222367	40692893	17	39936										
RBM22	0	genome.wustl.edu	37	chr5	150076368	150076368	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	catacctctctctccatattCtgtgtatagtactctttgtt	4	11	4	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	5	150076368	150076368	C	T	SNP	RBM22	ENST00000199814	human	ensembl	69_37n	-1	known	silent	c.357	p.Q119	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589	77	0	0	43	88	67.18	-	-	-	T	150076368	C	T	150076368	2	4	388	1	0	0	0	0	0	0	0	1	13205	912	32	2		2	RBM22	5	150076368	Silent	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	9854001	150076368	30838892	18	39937										
KIF4B	0	genome.wustl.edu	37	chr5	154395359	154395359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	atggatgatgaaaaaccagcGggtacagttaatgcgtcaaa	11	6	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	5	154395359	154395359	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.1940	p.R647Q	0.996	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	224	0	0	122	221	64.43	-	-	-	A	154395359	G	A	154395359	3	1	388	1	0	0	0	0	1	0	0	0	8356	1116	39	1	1942	1	KIF4B	5	154395359	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	4318991	154395359	26519901	19	39938										
BRPF3	0	genome.wustl.edu	37	chr6	36178029	36178029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	aattcatatccaagccaatgGatttttctactatgaggcgg	8	8	2	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	6	36178029	36178029	G	A	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.1903	p.D635N	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	96	0	0	394	114	22.44	-	-	-	A	36178029	G	A	36178029	3	1	388	1	0	0	0	0	1	0	0	0	1529	1174	41	2	1921	2	BRPF3	6	36178029	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		36178029	134937038	20	39939										
SYNCRIP	0	genome.wustl.edu	37	chr6	86351074	86351074	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	aaaccagcatcaagcaatgtCtgaaaattttctgaatggat	7	7	3	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	6	86351074	86351074	C	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	silent	c.84	p.Q28	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	149	0	0	244	136	35.79	-	-	-	T	86351074	C	T	86351074	2	4	388	1	0	0	0	0	0	0	0	1	15536	912	32	2		2	SYNCRIP	6	86351074	Silent	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	50173045	86351074	84763993	21	39940										
C6orf170	0	genome.wustl.edu	37	chr6	121615779	121615779	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cttacacatttcaaagtactGaacacactgttgaatggctg	7	9	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	6	121615779	121615779	G	A	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	nonsense	c.1168	p.Q390*	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	126	0	0	135	86	38.91	-	-	-	A	121615779	G	A	121615779	4	1	388	1	0	0	0	0	0	1	0	0	2365	1299	45	2	2693	2	C6orf170	6	121615779	Nonsense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	35264705	121615779	49499288	22	39941										
UBN2	0	genome.wustl.edu	37	chr7	138946092	138946092	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tgattagaaaattccagaaaGagaaggatgcattaaagaag	10	3	0	5			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	7	138946092	138946092	G	A	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.1000	p.E334K	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	50	0	0	68	42	38.18	-	-	-	A	138946092	G	A	138946092	3	1	388	1	0	0	0	0	1	0	0	0	16990	943	33	2	1022	2	UBN2	7	138946092	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		138946092	20192571	23	39942										
SGCZ	0	genome.wustl.edu	37	chr8	13965683	13965683	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	agcccttacctgagatcttgGgatggctctgctctgatgtg	12	10	3	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	8	13965683	13965683	G	T	SNP	SGCZ	ENST00000382080	human	ensembl	69_37n	-1	known	silent	c.609	p.S203	0.983	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053	66	0	0	161	174	51.94	-	-	-	T	13965683	G	T	13965683	2	4	388	1	0	0	0	0	0	0	0	1	14292	1219	43	4		4	SGCZ	8	13965683	Silent	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		13965683	132398339	24	39943										
C9orf96	0	genome.wustl.edu	37	chr9	136266928	136266928	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gccatcacctccaccctgctGagtgctcttcagagccaccc	7	19	3	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	9	136266928	136266928	G	A	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	silent	c.1260	p.L420	0.659	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	21	0	0	40	68	62.96	-	-	-	A	136266928	G	A	136266928	2	1	388	1	0	0	0	0	0	0	0	1	2533	1277	45	2		2	C9orf96	9	136266928	Silent	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		136266928	4946503	25	39944										
VCL	0	genome.wustl.edu	37	chr10	75854054	75854054	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	aaggagattctccagaggctCgagccttggccaaacaggtg	13	10	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	10	75854054	75854054	C	T	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	nonsense	c.1378	p.R460*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	16	0	0	36	36	50	-	-	-	T	75854054	C	T	75854054	4	4	388	1	0	0	0	0	0	1	0	0	17236	876	31	1	1420	1	VCL	10	75854054	Nonsense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09		75854054	59680693	26	39945										
TSGA10IP	0	genome.wustl.edu	37	chr11	65715545	65715545	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cggaatggaaaggcctatgcCtcgggatacgatgaaacttt	12	8	0	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	11	65715545	65715545	C	T	SNP	TSGA10IP	ENST00000532620	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	TSGA10IP	HGNC	ENSG00000175513	18	0	0	68	35	33.98	-	-	-	T	65715545	C	T	65715545	1	4	388	0	1	0	0	0	0	0	0	0	16714	668	24	4		4	TSGA10IP	11	65715545	RNA	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09		65715545	69290971	27	39946										
TRPC6	0	genome.wustl.edu	37	chr11	101353892	101353892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	atggtccacgcattatcttcCccatctgccacaacacacac	4	17	2	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	11	101353892	101353892	C	A	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.1298	p.G433V	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	50	0	0	158	80	33.47	-	-	-	A	101353892	C	A	101353892	3	1	388	1	0	0	0	0	1	0	0	0	16679	623	22	4	1533	4	TRPC6	11	101353892	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	35638347	101353892	33652624	28	39947										
TECTA	0	genome.wustl.edu	37	chr11	121028626	121028626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	caacgtgattcagtgcgaccCgcgccaatgcaagtcagacg	11	13	2	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	11	121028626	121028626	C	G	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.4382	p.P1461R	1.000	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	9	0	0	63	12	16	-	-	-	G	121028626	C	G	121028626	3	3	388	1	0	0	0	0	1	0	0	0	15842	652	23	3	4432	3	TECTA	11	121028626	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09	19674734	121028626	13977890	29	39948										
PTPRO	0	genome.wustl.edu	37	chr12	15661533	15661533	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	ggagagtggattgaagaactGaccgagaagccgcagcacgt	15	8	0	5			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	12	15661533	15661533	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	silent	c.1296	p.L432	0.867	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	18	0	0	89	66	42.58	-	-	-	T	15661533	G	T	15661533	2	4	388	1	0	0	0	0	0	0	0	1	12892	1277	45	2		2	PTPRO	12	15661533	Silent	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		15661533	118190362	30	39949										
ATP2B1	0	genome.wustl.edu	37	chr12	90024403	90024403	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gtaactaccattcttccagaGccttccattacatgagtacc	5	13	1	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	12	90024403	90024403	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	silent	c.807	p.G269	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	88	0	0	169	81	32.14	-	-	-	A	90024403	G	A	90024403	2	1	388	1	0	0	0	0	0	0	0	1	1143	958	34	4		4	ATP2B1	12	90024403	Silent	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	74362870	90024403	43827492	31	39950										
DRAM1	0	genome.wustl.edu	37	chr12	102315029	102315029	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	atatccacagaaatcaatggTgatatttgaagaaagaagaa	8	4	1	6			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	12	102315029	102315029	T	C	SNP	DRAM1	ENST00000258534	human	ensembl	69_37n	1	known	silent	c.708	p.G236	0.395	NULL	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048	93	0	0	223	101	31.08	-	-	-	C	102315029	T	C	102315029	2	2	388	1	0	0	0	0	0	0	0	1	4788	1683	59	5		5	DRAM1	12	102315029	Silent	SNP	T	TCGA-AR-A1AY-01A-21D-A12Q-09	12290626	102315029	31536866	32	39951										
NUAK1	0	genome.wustl.edu	37	chr12	106466578	106466578	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tcccacaaaacgtttgtaagAacttatccttctggtacagg	7	10	1	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	12	106466578	106466578	A	C	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.623	p.F208C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	63	0	0	135	94	41.05	-	-	-	C	106466578	A	C	106466578	3	2	388	1	0	0	0	0	1	0	0	0	10785	246	9	5	1374	5	NUAK1	12	106466578	Missense_Mutation	SNP	A	TCGA-AR-A1AY-01A-21D-A12Q-09	4151549	106466578	27385317	33	39952										
YLPM1	0	genome.wustl.edu	37	chr14	75264973	75264973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gtgggtattggtctaccccaTtcagaaaacaaccaagataa	8	9	2	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	14	75264973	75264973	T	G	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.2973	p.H991Q	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	34	0	0	41	39	48.75	-	-	-	G	75264973	T	G	75264973	3	3	388	1	0	0	0	0	1	0	0	0	17583	1490	52	5	2991	5	YLPM1	14	75264973	Missense_Mutation	SNP	T	TCGA-AR-A1AY-01A-21D-A12Q-09		75264973	32084567	34	39953										
CYLD	0	genome.wustl.edu	37	chr16	50816338	50816338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gaagaagaaaggcatccaggGtcattacaattcttgttact	9	7	2	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	16	50816338	50816338	G	A	SNP	CYLD	ENST00000311559	human	ensembl	69_37n	1	known	missense	c.1787	p.G596D	1.000	pfam_Peptidase_C19,superfamily_CAP-Gly_domain,pfscan_Peptidase_C19	pfam_CAP-Gly_domain,pfam_Peptidase_C19,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19	-	no_errors	CYLD	HGNC	ENSG00000083799	117	0	0	45	86	65.65	-	-	-	A	50816338	G	A	50816338	3	1	388	1	0	0	0	0	1	0	0	0	4174	1261	44	4	1821	4	CYLD	16	50816338	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		50816338	39538415	35	39954										
TP53	0	genome.wustl.edu	37	chr17	7579321	7579322	+	Frame_Shift_Del	DEL	CA	CA	-													0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	gggcaactgaccgtgcaagtCacagacttggctgtcccaga							TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	17	7579321	7579322	CA	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.366_365	p.V122fs	0.949:0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	11	0	0	19	16	43.24	-	-	-	-	7579322	CA	-	7579321	7	5	388	1	0	1	0	1	0	0	0	0	16477	813	29	0	936	0	TP53	17	7579321	Frame_Shift_Del	DEL	CA	TCGA-AR-A1AY-01A-21D-A12Q-09		7579321	73615889	36	39955										
LAMA3	0	genome.wustl.edu	37	chr18	21451420	21451420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cttcagacatgccagcagccGtgccccagtgtctagggagg	13	13	2	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	18	21451420	21451420	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.4793	p.R1598H	0.002	pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	11	0	0	80	57	41.61	-	-	-	A	21451420	G	A	21451420	3	1	388	1	0	0	0	0	1	0	0	0	8661	1145	40	1	4943	1	LAMA3	18	21451420	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		21451420	56625828	37	39956										
FHOD3	0	genome.wustl.edu	37	chr18	34289239	34289239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tccctcagtgaaaaagagagGcagaacgagggggtgaacga	15	7	1	4			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	18	34289239	34289239	G	T	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.1893	p.R631S	0.999	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	14	0	0	54	29	34.52	-	-	-	T	34289239	G	T	34289239	3	4	388	1	0	0	0	0	1	0	0	0	5929	1194	42	4	1951	4	FHOD3	18	34289239	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	12837819	34289239	43788009	38	39957										
CBLC	0	genome.wustl.edu	37	chr19	45303662	45303662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tcctaaaggggaactcccctCcagctgcgctgggaccccag	11	16	0	0			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	19	45303662	45303662	C	G	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	missense	c.1387	p.P463A	0.027	NULL	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	20	0	0	54	26	32.5	-	-	-	G	45303662	C	G	45303662	3	3	388	1	0	0	0	0	1	0	0	0	2727	855	30	2	1425	2	CBLC	19	45303662	Missense_Mutation	SNP	C	TCGA-AR-A1AY-01A-21D-A12Q-09		45303662	13825321	39	39958										
RPL13A	0	genome.wustl.edu	37	chr19	49995067	49995067	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	tcaagacccacggactcctgGtctgagcccaataaagactg	9	13	2	3			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	19	49995067	49995067	G	C	SNP	RPL13A	ENST00000391857	human	ensembl	69_37n	1	known	missense	c.607	p.V203L	1.000	NULL	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541	13	0	0	11	29	72.5	-	-	-	C	49995067	G	C	49995067	3	2	388	1	0	0	0	0	1	0	0	0	13646	1261	44	4	637	4	RPL13A	19	49995067	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	4691405	49995067	9133916	40	39959										
KCNE2	0	genome.wustl.edu	37	chr21	35742917	35742917	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	agttgatgctgagaacttctActatgtcatcctgtacctca	7	10	3	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	21	35742917	35742917	A	T	SNP	KCNE2	ENST00000290310	human	ensembl	69_37n	1	known	missense	c.140	p.Y47F	1.000	prints_K_chnl_volt-dep_bsu_KCNE2	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE2	-	no_errors	KCNE2	HGNC	ENSG00000159197	81	0	0	250	158	38.73	-	-	-	T	35742917	A	T	35742917	3	4	388	1	0	0	0	0	1	0	0	0	8077	391	14	5	142	5	KCNE2	21	35742917	Missense_Mutation	SNP	A	TCGA-AR-A1AY-01A-21D-A12Q-09		35742917	12386978	41	39960										
B3GALT5	0	genome.wustl.edu	37	chr21	41032610	41032610	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cctttgtttacaagaaagacGggaacttccttaagctccca	7	11	0	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	21	41032610	41032610	G	C	SNP	B3GALT5	ENST00000343118	human	ensembl	69_37n	1	known	missense	c.124	p.G42R	0.011	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT5	HGNC	ENSG00000183778	97	0	0	225	158	41.25	-	-	-	C	41032610	G	C	41032610	3	2	388	1	0	0	0	0	1	0	0	0	1254	1116	39	3	126	3	B3GALT5	21	41032610	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	5289693	41032610	7097285	42	39961										
CARD10	0	genome.wustl.edu	37	chr22	37892477	37892477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cttcgagtccatcagggaggGgagtgtggacccctgattcc	14	11	1	1			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	22	37892477	37892477	G	A	SNP	CARD10	ENST00000251973	human	ensembl	69_37n	-1	known	missense	c.2038	p.P680S	0.014	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	16	0	0	34	109	76.22	-	-	-	A	37892477	G	A	37892477	3	1	388	1	0	0	0	0	1	0	0	0	2669	1232	43	4	1092	4	CARD10	22	37892477	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		37892477	13412089	43	39962										
ARSF	0	genome.wustl.edu	37	chrX	3019142	3019142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	ttttaggcaagattcttgatGctatcgatgattttggccta	9	6	1	3			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	X	3019142	3019142	G	A	SNP	ARSF	ENST00000359361	human	ensembl	69_37n	1	known	missense	c.982	p.A328T	0.007	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096	154	0	0	141	224	61.2	-	-	-	A	3019142	G	A	3019142	3	1	388	1	0	0	0	0	1	0	0	0	995	1319	46	4	1008	4	ARSF	23	3019142	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09		3019142	152251418	44	39963										
ZNF157	0	genome.wustl.edu	37	chrX	47272787	47272787	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	accggagaactcacacaggaGagaaaccttatgaatgtagt	10	8	1	3			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	X	47272787	47272787	G	C	SNP	ZNF157	ENST00000377073	human	ensembl	69_37n	1	known	missense	c.1315	p.E439Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117	103	0	0	59	142	70.65	-	-	-	C	47272787	G	C	47272787	3	2	388	1	0	0	0	0	1	0	0	0	17833	943	33	2	1329	2	ZNF157	23	47272787	Missense_Mutation	SNP	G	TCGA-AR-A1AY-01A-21D-A12Q-09	44253645	47272787	107997773	45	39964										
MAGED1	0	genome.wustl.edu	37	chrX	51639993	51639993	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.452123803906209	1.51411192214112	1.08150851581509	1.62226277372263	0.0405594405594406	0.314818514818515	0	cccgactggccactgccaccTgattggccacttcccactga	8	18	0	2			TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15f90ef0-831b-40a3-98bd-ec226a9e8b26	1c6d0926-e635-4f26-97a6-642c012e930d	X	51639993	51639993	T	C	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	silent	c.1410	p.P470	0.184	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	8	0	0	21	12	36.36	-	-	-	C	51639993	T	C	51639993	2	2	388	1	0	0	0	0	0	0	0	1	9254	1567	55	5		5	MAGED1	23	51639993	Silent	SNP	T	TCGA-AR-A1AY-01A-21D-A12Q-09	4367206	51639993	103630567	46	39965										
EPB41	0	genome.wustl.edu	37	chr1	29314146	29314146	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cactcctacacatgaagactTgaccaagaacaaggagcgga	9	11	0	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	29314146	29314146	T	A	SNP	EPB41	ENST00000343067	human	ensembl	69_37n	1	known	nonsense	c.197	p.L66*	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	53	0	0	7	20	71.43	-	-	-	A	29314146	T	A	29314146	4	1	389	1	0	0	0	0	0	1	0	0	5188	1821	63	5	199	5	EPB41	1	29314146	Nonsense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09		29314146	219936475	1	39966										
PIK3R3	0	genome.wustl.edu	37	chr1	46511674	46511674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tcccataaagcaagtcctctGcttgtactcgattgatatcc	6	12	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	46511674	46511674	G	A	SNP	PIK3R3	ENST00000540385	human	ensembl	69_37n	-1	known	missense	c.1241	p.A414V	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461	174	0	0	49	13	20.97	-	-	-	A	46511674	G	A	46511674	3	1	389	1	0	0	0	0	1	0	0	0	11994	1319	46	4	290	4	PIK3R3	1	46511674	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	17197528	46511674	202738947	2	39967										
PDE4B	0	genome.wustl.edu	37	chr1	66827453	66827453	+	Frame_Shift_Del	DEL	G	G	-													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cacgctttggagtcaacactGaaaatgaagatcacctggcc							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	66827453	66827453	G	-	DEL	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	frame_shift_del	c.997	p.E333fs	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	104	0	0	9	25	64.1	-	-	-	-	66827453	G	-	66827453	7	5	389	1	0	1	0	1	0	0	0	0	11713	1291	45	0	1389	0	PDE4B	1	66827453	Frame_Shift_Del	DEL	G	TCGA-AR-A24H-01A-11D-A167-09	20315779	66827453	182423168	3	39968										
AKNAD1	0	genome.wustl.edu	37	chr1	109395170	109395170	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgatttaagacttcaaggccAtccttttttgaggtaaaact	7	7	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	109395170	109395170	A	T	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	missense	c.117	p.D39E	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	72	0	0	24	9	27.27	-	-	-	T	109395170	A	T	109395170	3	4	389	1	0	0	0	0	1	0	0	0	464	214	8	5	2453	5	AKNAD1	1	109395170	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	42567717	109395170	139855451	4	39969										
FCRL4	0	genome.wustl.edu	37	chr1	157559026	157559026	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gcaagcgcacagggttacttCgtggggagccccgggcctgg	17	12	0	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	157559026	157559026	C	A	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	missense	c.275	p.R92L	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	74	0	0	54	7	11.48	-	-	-	A	157559026	C	A	157559026	3	1	389	1	0	0	0	0	1	0	0	0	5843	884	31	3	1312	3	FCRL4	1	157559026	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	48163856	157559026	91691595	5	39970										
ANGPTL1	0	genome.wustl.edu	37	chr1	178834198	178834198	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	taacctggatccctctgaatCtcgttacctcccagcagacc	6	16	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	178834198	178834198	C	A	SNP	ANGPTL1	ENST00000234816	human	ensembl	69_37n	-1	known	missense	c.714	p.E238D	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL1	HGNC	ENSG00000116194	73	0	0	47	11	18.97	-	-	-	A	178834198	C	A	178834198	3	1	389	1	0	0	0	0	1	0	0	0	613	912	32	2	777	2	ANGPTL1	1	178834198	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	21275172	178834198	70416423	6	39971										
KIAA1614	0	genome.wustl.edu	37	chr1	180886055	180886055	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtccccaggacggccctgctGggtgagcgctggagagctgg	18	12	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	180886055	180886055	G	T	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	silent	c.816	p.L272	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	72	0	0	30	7	18.92	-	-	-	T	180886055	G	T	180886055	2	4	389	1	0	0	0	0	0	0	0	1	8300	1335	47	4		4	KIAA1614	1	180886055	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	2051857	180886055	68364566	7	39972										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185270573	185270573	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtcatatacttacttgaagtCttttctgaagcaacgatttt	6	7	3	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	185270573	185270573	C	G	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	missense	c.888	p.K296N	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	177	0	0	115	36	23.84	-	-	-	G	185270573	C	G	185270573	3	3	389	1	0	0	0	0	1	0	0	0	7984	912	32	2	1068	2	IVNS1ABP	1	185270573	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	4384518	185270573	63980048	8	39973										
DDX59	0	genome.wustl.edu	37	chr1	200613627	200613627	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cgctgttccattttgacctaAtcttcctactcttccaatct	3	14	3	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	200613627	200613627	A	G	SNP	DDX59	ENST00000429498	human	ensembl	69_37n	-1	putative	missense	c.347	p.I116T	0.751	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX59	HGNC	ENSG00000118197	124	0	0	89	25	21.93	-	-	-	G	200613627	A	G	200613627	3	3	389	1	0	0	0	0	1	0	0	0	4407	98	4	5	248	5	DDX59	1	200613627	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	15343054	200613627	48636994	9	39974										
PPP1R12B	0	genome.wustl.edu	37	chr1	202418224	202418224	+	Frame_Shift_Del	DEL	C	C	-													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tcgccctcttcctagcactgCcaatggggttacagctactc							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	202418224	202418224	C	-	DEL	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	frame_shift_del	c.1775	p.N593fs	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	94	0	0	54	25	31.25	-	-	-	-	202418224	C	-	202418224	7	5	389	1	0	1	0	1	0	0	0	0	12432	739	26	0	1915	0	PPP1R12B	1	202418224	Frame_Shift_Del	DEL	C	TCGA-AR-A24H-01A-11D-A167-09	1804597	202418224	46832397	10	39975										
CHI3L1	0	genome.wustl.edu	37	chr1	203154430	203154430	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtgggtacagaggaagcggtCaagggcatctgggaagcagc	18	7	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	203154430	203154430	C	T	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.139	p.D47N	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	93	0	0	67	13	16.25	-	-	-	T	203154430	C	T	203154430	3	4	389	1	0	0	0	0	1	0	0	0	3369	826	29	2	1044	2	CHI3L1	1	203154430	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	736206	203154430	46096191	11	39976										
PLEKHA6	0	genome.wustl.edu	37	chr1	204198106	204198106	+	Frame_Shift_Del	DEL	C	C	-													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ataatgctggggctctagctCcattttgcgaagccgggcaa							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	204198106	204198106	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	frame_shift_del	c.2710	p.E904fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	90	0	0	57	8	12.31	-	-	-	-	204198106	C	-	204198106	7	5	389	1	0	1	0	1	0	0	0	0	12134	864	30	0	452	0	PLEKHA6	1	204198106	Frame_Shift_Del	DEL	C	TCGA-AR-A24H-01A-11D-A167-09	1043676	204198106	45052515	12	39977										
PLEKHA6	0	genome.wustl.edu	37	chr1	204230534	204230534	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggcctcttgctcctcggggcTctcggcactgaagaagtagg	14	12	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	204230534	204230534	T	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.424	p.S142C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	58	0	0	35	7	16.67	-	-	-	A	204230534	T	A	204230534	3	1	389	1	0	0	0	0	1	0	0	0	12134	1551	54	5	2786	5	PLEKHA6	1	204230534	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	32428	204230534	45020087	13	39978										
CR2	0	genome.wustl.edu	37	chr1	207648368	207648368	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tccccacagtgcttacgatcTcctcctgtgactcgctgccc	7	18	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	207648368	207648368	T	A	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	silent	c.2523	p.S841	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	105	0	0	83	19	18.27	-	-	-	A	207648368	T	A	207648368	2	1	389	1	0	0	0	0	0	0	0	1	3872	1538	54	5		5	CR2	1	207648368	Silent	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	3417834	207648368	41602253	14	39979										
PUM2	0	genome.wustl.edu	37	chr2	20512037	20512037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gagaatccaatttatcagcaGgagaagaacttaatacatat	7	6	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	20512037	20512037	G	A	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.308	p.P103L	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	91	0	0	26	10	27.78	-	-	-	A	20512037	G	A	20512037	3	1	389	1	0	0	0	0	1	0	0	0	12909	1000	35	4	2958	4	PUM2	2	20512037	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		20512037	222687336	15	39980										
APOB	0	genome.wustl.edu	37	chr2	21251331	21251331	+	Missense_Mutation	SNP	A	A	G													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctgcctgtgaaggactcctcAtcaacataagataggcagcc							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	21251331	21251331	A	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.1697	p.M566T	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	91	0	0	26	12	31.58	-	-	-	G	21251331	A	G	21251331	3	3	389	1	0	0	0	0	1	0	0	0	787	217	8	5	12062	5	APOB	2	21251331	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	739294	21251331	221948042	16	39981	330	2								
APOB	0	genome.wustl.edu	37	chr2	21251332	21251332	+	Missense_Mutation	SNP	T	T	G													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgcctgtgaaggactcctcaTcaacataagataggcagcca							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	21251332	21251332	T	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.1696	p.M566L	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	94	0	0	26	12	31.58	-	-	-	G	21251332	T	G	21251332	3	3	389	1	0	0	0	0	1	0	0	0	787	1435	50	5	12063	5	APOB	2	21251332	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	1	21251332	221948041	17	39982	330	2								
BIRC6	0	genome.wustl.edu	37	chr2	32656007	32656007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tggagctaacccgctttgagActttgactccaaggttttca	9	10	1	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	32656007	32656007	A	G	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.3097	p.T1033A	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	123	0	0	35	17	32.69	-	-	-	G	32656007	A	G	32656007	3	3	389	1	0	0	0	0	1	0	0	0	1443	275	10	5	3143	5	BIRC6	2	32656007	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	11404675	32656007	210543366	18	39983										
MSH2	0	genome.wustl.edu	37	chr2	47702380	47702380	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	taatgacgtatactttgaaaAagataaacagatgttccaca	6	6	0	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	47702380	47702380	A	C	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	missense	c.1976	p.K659T	1.000	pfam_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	60	0	0	25	11	30.56	-	-	-	C	47702380	A	C	47702380	3	2	389	1	0	0	0	0	1	0	0	0	9942	14	1	5	2022	5	MSH2	2	47702380	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	15046373	47702380	195496993	19	39984										
DGUOK	0	genome.wustl.edu	37	chr2	74177737	74177737	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tctttgcaaagaatctttttGaaaatggttccctcagtgac	7	8	3	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	74177737	74177737	G	C	SNP	DGUOK	ENST00000264093	human	ensembl	69_37n	1	known	missense	c.469	p.E157Q	1.000	pfam_Deoxynucleoside_kinase	pfam_Deoxynucleoside_kinase	-	no_errors	DGUOK	HGNC	ENSG00000114956	115	0	0	45	17	27.42	-	-	-	C	74177737	G	C	74177737	3	2	389	1	0	0	0	0	1	0	0	0	4511	1291	45	2	483	2	DGUOK	2	74177737	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	26475357	74177737	169021636	20	39985										
ZSWIM2	0	genome.wustl.edu	37	chr2	187693353	187693353	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggaataaaaagatctggttcTttctgctttgatagatgaat	9	4	3	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	187693353	187693353	T	A	SNP	ZSWIM2	ENST00000295131	human	ensembl	69_37n	-1	known	missense	c.1260	p.K420N	0.896	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	70	0	0	41	6	12.77	-	-	-	A	187693353	T	A	187693353	3	1	389	1	0	0	0	0	1	0	0	0	18332	1606	56	5	645	5	ZSWIM2	2	187693353	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	113515616	187693353	55506020	21	39986										
TRANK1	0	genome.wustl.edu	37	chr3	36899136	36899136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttcaggcagtgttctggcagTggcaccacatggcactgact	12	11	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	36899136	36899136	T	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1945	p.T649A	0.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	69	0	0	18	29	61.7	-	-	-	C	36899136	T	C	36899136	3	2	389	1	0	0	0	0	1	0	0	0	16550	1696	59	5	6880	5	TRANK1	3	36899136	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09		36899136	161123294	22	39987										
QARS	0	genome.wustl.edu	37	chr3	49136104	49136104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aggctggccccaagccaggcGcttaaatcctggctctggct	12	14	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	49136104	49136104	G	A	SNP	QARS	ENST00000306125	human	ensembl	69_37n	-1	known	missense	c.1885	p.R629C	1.000	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC	ENSG00000172053	35	0	0	3	10	76.92	-	-	-	A	49136104	G	A	49136104	3	1	389	1	0	0	0	0	1	0	0	0	12954	1087	38	1	462	1	QARS	3	49136104	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	12236968	49136104	148886326	23	39988										
VPRBP	0	genome.wustl.edu	37	chr3	51440606	51440606	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggatcagttccacctcctcaTctgcatcagagtcttcatcc	6	15	6	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	51440606	51440606	T	A	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.3089	p.D1030V	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	112	0	0	41	28	40.58	-	-	-	A	51440606	T	A	51440606	3	1	389	1	0	0	0	0	1	0	0	0	17282	1435	50	5	95	5	VPRBP	3	51440606	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	2304502	51440606	146581824	24	39989										
DCP1A	0	genome.wustl.edu	37	chr3	53326366	53326366	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aatggggccctgaaggggctCtggttggcaatcagactggc	16	9	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	53326366	53326366	C	A	SNP	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	128	0	0	33	40	54.79	-	-	-	A	53326366	C	A	53326366	1	1	389	0	1	0	0	0	0	0	0	0	4329	912	32	2		2	DCP1A	3	53326366	RNA	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	1885760	53326366	144696064	25	39990										
LAMP3	0	genome.wustl.edu	37	chr3	182841959	182841960	+	Frame_Shift_Ins	INS	-	-	C													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gaccaaccacgatggccccaINSatcacaggaagcacaattgt							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	182841959	182841960	-	C	INS	LAMP3	ENST00000265598	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1161_1160	p.I387fs	0.985:1.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	101	0	0	39	5	11.36	-	-	-	C	182841960	-	C	182841959	7	5	389	1	0	1	1	0	0	0	0	0	8673	126	5	0	93	0	LAMP3	3	182841959	Frame_Shift_Ins	INS	-	TCGA-AR-A24H-01A-11D-A167-09	129515593	182841959	15180471	26	39991										
YEATS2	0	genome.wustl.edu	37	chr3	183524710	183524710	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gccgcaaactggaggacctgCaacagttccagaaaagggaa	12	10	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	183524710	183524710	C	A	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.3841	p.Q1281K	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	75	0	0	26	20	43.48	-	-	-	A	183524710	C	A	183524710	3	1	389	1	0	0	0	0	1	0	0	0	17569	711	25	4	3947	4	YEATS2	3	183524710	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	682751	183524710	14497720	27	39992										
PIGZ	0	genome.wustl.edu	37	chr3	196675280	196675280	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccagggtgacgtaggaaccaGacagcagggccagggcgttc	16	11	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	196675280	196675280	G	C	SNP	PIGZ	ENST00000412723	human	ensembl	69_37n	-1	known	missense	c.488	p.S163C	0.672	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227	69	0	0	20	18	47.37	-	-	-	C	196675280	G	C	196675280	3	2	389	1	0	0	0	0	1	0	0	0	11979	942	33	2	1255	2	PIGZ	3	196675280	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	13150570	196675280	1347150	28	39993										
NAT8L	0	genome.wustl.edu	37	chr4	2065586	2065586	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggtggagctgctgcggatgtCtgtggactcacgtttccgag	16	9	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	2065586	2065586	C	T	SNP	NAT8L	ENST00000423729	human	ensembl	69_37n	1	known	missense	c.641	p.S214F	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8L	HGNC	ENSG00000185818	38	0	0	4	9	69.23	-	-	-	T	2065586	C	T	2065586	3	4	389	1	0	0	0	0	1	0	0	0	10253	913	32	2	651	2	NAT8L	4	2065586	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		2065586	189088690	29	39994										
ZBTB49	0	genome.wustl.edu	37	chr4	4322987	4322987	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtcagtttttctccagcatgActctctgggggctagcgatg	12	10	3	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	4322987	4322987	A	T	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	missense	c.2242	p.T748S	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	54	0	0	31	7	18.42	-	-	-	T	4322987	A	T	4322987	3	4	389	1	0	0	0	0	1	0	0	0	17646	275	10	5	2268	5	ZBTB49	4	4322987	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	2257401	4322987	186831289	30	39995										
WDFY3	0	genome.wustl.edu	37	chr4	85663022	85663022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtgaaataaaacacattgttCaccaatacctggtagcttcc	6	10	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	85663022	85663022	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.6126	p.V2042	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	64	0	0	11	12	52.17	-	-	-	T	85663022	C	T	85663022	2	4	389	1	0	0	0	0	0	0	0	1	17367	813	29	2		2	WDFY3	4	85663022	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	81340035	85663022	105491254	31	39996										
SNCAIP	0	genome.wustl.edu	37	chr5	121780266	121780266	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	attttctgacagaccttggtTgaatatggagcaaatgtcac	9	7	2	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	121780266	121780266	T	A	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	silent	c.1572	p.V524	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	104	0	0	34	11	24.44	-	-	-	A	121780266	T	A	121780266	2	1	389	1	0	0	0	0	0	0	0	1	14930	1799	63	5		5	SNCAIP	5	121780266	Silent	SNP	T	TCGA-AR-A24H-01A-11D-A167-09		121780266	59134994	32	39997										
PCDHA12	0	genome.wustl.edu	37	chr5	140256083	140256083	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtcctggtggaagttctggaCgtgaatgacaatgtccctga	13	8	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	140256083	140256083	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.1026	p.D342	0.865	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	56	0	0	15	7	31.82	-	-	-	T	140256083	C	T	140256083	2	4	389	1	0	0	0	0	0	0	0	1	11595	535	19	1		1	PCDHA12	5	140256083	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	18475817	140256083	40659177	33	39998										
MED7	0	genome.wustl.edu	37	chr5	156565934	156565934	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gaggcaaatcatcaggcaaaGaagccaagcaattctgaatc	9	9	3	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	156565934	156565934	G	C	SNP	MED7	ENST00000286317	human	ensembl	69_37n	-1	known	missense	c.509	p.S170C	1.000	NULL	pfam_Mediatior_Med7	-	no_errors	MED7	HGNC	ENSG00000155868	141	0	0	47	39	45.35	-	-	-	C	156565934	G	C	156565934	3	2	389	1	0	0	0	0	1	0	0	0	9523	942	33	2	196	2	MED7	5	156565934	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	16309851	156565934	24349326	34	39999										
C5orf45	0	genome.wustl.edu	37	chr5	179280249	179280249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctgaaggaacaggaagctcgGaagcaggagctccgtgtctg	15	9	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	179280249	179280249	G	C	SNP	C5orf45	ENST00000403396	human	ensembl	69_37n	-1	known	missense	c.200	p.S67C	0.001	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	40	0	0	9	11	55	-	-	-	C	179280249	G	C	179280249	3	2	389	1	0	0	0	0	1	0	0	0	2325	1189	41	2		2	C5orf45	5	179280249	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	22714315	179280249	1635011	35	40000										
PNPLA1	0	genome.wustl.edu	37	chr6	36262089	36262089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gactgcccggccatcttccaCgacttccgcatgttcaactg	8	16	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	36262089	36262089	C	T	SNP	PNPLA1	ENST00000457797	human	ensembl	69_37n	1	known	silent	c.630	p.H210	0.766	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316	47	0	0	13	12	46.15	-	-	-	T	36262089	C	T	36262089	2	4	389	1	0	0	0	0	0	0	0	1	12238	535	19	1		1	PNPLA1	6	36262089	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		36262089	134852978	36	40001										
MAD2L1BP	0	genome.wustl.edu	37	chr6	43607982	43607982	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gccccctacagcgtggaccaGagcctgagcacagcagcttg	12	15	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	43607982	43607982	G	C	SNP	MAD2L1BP	ENST00000451025	human	ensembl	69_37n	1	known	missense	c.633	p.Q211H	0.180	pfam_MAD1/Cdc20-bound-Mad2-bd	pfam_MAD1/Cdc20-bound-Mad2-bd	-	no_errors	MAD2L1BP	HGNC	ENSG00000124688	46	0	0	13	14	51.85	-	-	-	C	43607982	G	C	43607982	3	2	389	1	0	0	0	0	1	0	0	0	9216	933	33	2	697	2	MAD2L1BP	6	43607982	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	7345893	43607982	127507085	37	40002										
CDK19	0	genome.wustl.edu	37	chr6	110942346	110942346	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	acaggtccacctgagtttgcGcctgaaggccctagccgtgg	13	13	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	110942346	110942346	G	C	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	silent	c.1338	p.G446	0.111	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	65	0	0	32	10	23.81	-	-	-	C	110942346	G	C	110942346	2	2	389	1	0	0	0	0	0	0	0	1	3164	1074	38	3		3	CDK19	6	110942346	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	67334364	110942346	60172721	38	40003										
REV3L	0	genome.wustl.edu	37	chr6	111694984	111694984	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cttttagaactgccagtccaGactgtccttcaccaaatgct	6	13	1	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	111694984	111694984	G	C	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.4574	p.S1525C	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	176	0	0	59	26	30.59	-	-	-	C	111694984	G	C	111694984	3	2	389	1	0	0	0	0	1	0	0	0	13323	942	33	2	4898	2	REV3L	6	111694984	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	752638	111694984	59420083	39	40004										
RFX6	0	genome.wustl.edu	37	chr6	117249959	117249959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ataaactacccagagtctcaCaggctcggatcaatggtgaa	9	10	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	117249959	117249959	C	G	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.2436	p.H812Q	0.945	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	126	0	0	58	22	27.5	-	-	-	G	117249959	C	G	117249959	3	3	389	1	0	0	0	0	1	0	0	0	13350	477	17	4	2506	4	RFX6	6	117249959	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	5554975	117249959	53865108	40	40005										
SYNE1	0	genome.wustl.edu	37	chr6	152464831	152464831	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgatattttcggtttgctgtAtctgaaaacggctatcatcc	8	8	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	152464831	152464831	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.25046	p.I8349R	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	102	0	0	46	9	16.36	-	-	-	C	152464831	A	C	152464831	3	2	389	1	0	0	0	0	1	0	0	0	15537	449	16	5	1383	5	SYNE1	6	152464831	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	35214872	152464831	18650236	41	40006										
RPS6KA2	0	genome.wustl.edu	37	chr6	166831734	166831734	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttagctgcgtcagatatcgaGtcccagtttcccccagaaag	9	12	1	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	166831734	166831734	G	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	missense	c.1992	p.D664E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	58	0	0	17	11	39.29	-	-	-	T	166831734	G	T	166831734	3	4	389	1	0	0	0	0	1	0	0	0	13737	1020	36	4	296	4	RPS6KA2	6	166831734	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	14366903	166831734	4283333	42	40007										
C6orf70	0	genome.wustl.edu	37	chr6	170176590	170176590	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gagctctgcagcacacctgtTcccaccctgttctgccccag	8	18	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	170176590	170176590	T	A	SNP	C6orf70	ENST00000366773	human	ensembl	69_37n	1	known	silent	c.1560	p.V520	0.000	NULL	NULL	-	no_errors	C6orf70	HGNC	ENSG00000130023	79	0	0	44	7	13.46	-	-	-	A	170176590	T	A	170176590	2	1	389	1	0	0	0	0	0	0	0	1	2392	1770	62	5		5	C6orf70	6	170176590	Silent	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	3344856	170176590	938477	43	40008										
CHN2	0	genome.wustl.edu	37	chr7	29433303	29433303	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tttttaatataggtggaaaaCagaccaaaatattatggaag	8	3	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	29433303	29433303	C	G	SNP	CHN2	ENST00000539406	human	ensembl	69_37n	1	known	missense	c.378	p.N126K	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN2	HGNC	ENSG00000106069	94	0	0	41	10	19.61	-	-	-	G	29433303	C	G	29433303	3	3	389	1	0	0	0	0	1	0	0	0	3392	477	17	4	167	4	CHN2	7	29433303	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		29433303	129705360	44	40009										
TBX20	0	genome.wustl.edu	37	chr7	35242254	35242254	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctggatggggtgaggaatggGtgttgctatggatgctgtgc	19	4	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	35242254	35242254	G	C	SNP	TBX20	ENST00000408931	human	ensembl	69_37n	-1	known	missense	c.1132	p.P378A	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX20	HGNC	ENSG00000164532	135	0	0	75	23	23.47	-	-	-	C	35242254	G	C	35242254	3	2	389	1	0	0	0	0	1	0	0	0	15751	1261	44	4	214	4	TBX20	7	35242254	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	5808951	35242254	123896409	45	40010										
YWHAG	0	genome.wustl.edu	37	chr7	75959386	75959386	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttctctatcttctcccggtaCgcacggaccatctcaatctt	5	15	5	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	75959386	75959386	C	T	SNP	YWHAG	ENST00000307630	human	ensembl	69_37n	-1	known	silent	c.252	p.A84	0.869	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027	111	0	0	20	21	51.22	-	-	-	T	75959386	C	T	75959386	2	4	389	1	0	0	0	0	0	0	0	1	17600	523	19	1		1	YWHAG	7	75959386	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	40717132	75959386	83179277	46	40011										
ABCB1	0	genome.wustl.edu	37	chr7	87168661	87168661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	agctttgccaaatgtgaaacCctgtgggcaggaacatacct	10	10	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	87168661	87168661	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2320	p.G774S	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	67	0	0	15	15	50	-	-	-	T	87168661	C	T	87168661	3	4	389	1	0	0	0	0	1	0	0	0	40	637	22	4	1562	4	ABCB1	7	87168661	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	11209275	87168661	71970002	47	40012										
TRIM4	0	genome.wustl.edu	37	chr7	99517012	99517012	+	Frame_Shift_Del	DEL	C	C	-													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggtcaactcctcctggatgtCctcagcttccatgctgcttc							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	99517012	99517012	C	-	DEL	TRIM4	ENST00000355947	human	ensembl	69_37n	-1	known	frame_shift_del	c.13	p.D5fs	0.986	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	12	0	0	4	2	33.33	-	-	-	-	99517012	C	-	99517012	7	5	389	1	0	1	0	1	0	0	0	0	16610	855	30	0	1517	0	TRIM4	7	99517012	Frame_Shift_Del	DEL	C	TCGA-AR-A24H-01A-11D-A167-09	12348351	99517012	59621651	48	40013										
ACTL6B	0	genome.wustl.edu	37	chr7	100245120	100245120	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctggggtagcttctccttctTcttccagtttgggggggcac	13	11	3	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	100245120	100245120	T	A	SNP	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	nonsense	c.706	p.K236*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	40	0	0	10	8	44.44	-	-	-	A	100245120	T	A	100245120	4	1	389	1	0	0	0	0	0	1	0	0	199	1792	62	5	602	5	ACTL6B	7	100245120	Nonsense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	728108	100245120	58893543	49	40014										
TES	0	genome.wustl.edu	37	chr7	115889294	115889294	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccatcaatacagttacctatGagtgggctcctcctgtccag	8	13	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	115889294	115889294	G	A	SNP	TES	ENST00000358204	human	ensembl	69_37n	1	known	missense	c.334	p.E112K	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TES	HGNC	ENSG00000135269	66	0	0	18	21	53.85	-	-	-	A	115889294	G	A	115889294	3	1	389	1	0	0	0	0	1	0	0	0	15860	1291	45	2	344	2	TES	7	115889294	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	15644174	115889294	43249369	50	40015										
ZNF786	0	genome.wustl.edu	37	chr7	148768278	148768278	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gcctctccccgctgtgcactCtcaggtgctcacggagcttg	11	16	3	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	148768278	148768278	C	G	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.1586	p.R529T	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	35	0	0	5	6	54.55	-	-	-	G	148768278	C	G	148768278	3	3	389	1	0	0	0	0	1	0	0	0	18251	913	32	2	766	2	ZNF786	7	148768278	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	32878984	148768278	10370385	51	40016										
PRKDC	0	genome.wustl.edu	37	chr8	48839765	48839765	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aaacattacctgacaaggctGaagtcttcaggtatccatcc	7	11	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	48839765	48839765	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	nonsense	c.2408	p.S803*	0.093	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	142	0	0	35	40	53.33	-	-	-	T	48839765	G	T	48839765	4	4	389	1	0	0	0	0	0	1	0	0	12602	1294	45	2	10241	2	PRKDC	8	48839765	Nonsense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		48839765	97524257	52	40017										
CHD7	0	genome.wustl.edu	37	chr8	61773585	61773585	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gttatcaatcttgaagatggGactaggctggtgggggaaga	16	4	2	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	61773585	61773585	G	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	silent	c.7731	p.G2577	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	95	0	0	20	16	44.44	-	-	-	C	61773585	G	C	61773585	2	2	389	1	0	0	0	0	0	0	0	1	3359	1161	41	2		2	CHD7	8	61773585	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	12933820	61773585	84590437	53	40018										
ZFPM2	0	genome.wustl.edu	37	chr8	106814376	106814376	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgacccaaataagactacctGtgaagcttgcaacattacct	6	11	0	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	106814376	106814376	G	C	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.2066	p.C689S	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	66	0	0	30	11	26.83	-	-	-	C	106814376	G	C	106814376	3	2	389	1	0	0	0	0	1	0	0	0	17754	1377	48	4	2096	4	ZFPM2	8	106814376	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	45040791	106814376	39549646	54	40019										
SAMD12	0	genome.wustl.edu	37	chr8	119391733	119391733	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctccctgactcctgtctgtcCtaatagtaaggtggtctttc	8	12	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	119391733	119391733	C	G	SNP	SAMD12	ENST00000314727	human	ensembl	69_37n	-1	known	missense	c.529	p.G177R	0.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD12	HGNC	ENSG00000177570	154	0	0	79	67	45.89	-	-	-	G	119391733	C	G	119391733	3	3	389	1	0	0	0	0	1	0	0	0	13903	690	24	4	107	4	SAMD12	8	119391733	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	12577357	119391733	26972289	55	40020										
NPR2	0	genome.wustl.edu	37	chr9	35801760	35801760	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	agtcgcctcacactgtcgctGgtgagcccttgtctcagctg	11	14	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	35801760	35801760	G	A	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	silent	c.1557	p.L519	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	108	0	0	65	15	18.75	-	-	-	A	35801760	G	A	35801760	2	1	389	1	0	0	0	0	0	0	0	1	10668	1362	47	4		4	NPR2	9	35801760	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		35801760	105411671	56	40021										
OR13J1	0	genome.wustl.edu	37	chr9	35870175	35870175	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gcatcagaggcacaaaggtgGgcgtgtagcagatgtccagg	16	8	1	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	35870175	35870175	G	C	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.224	p.P75R	0.438	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	141	0	0	61	18	22.78	-	-	-	C	35870175	G	C	35870175	3	2	389	1	0	0	0	0	1	0	0	0	11017	1232	43	4	717	4	OR13J1	9	35870175	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	68415	35870175	105343256	57	40022										
FAM22F	0	genome.wustl.edu	37	chr9	97082784	97082784	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctctggggcctgggtggtggCaggtgggccttggtctccgc	19	11	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	97082784	97082784	C	G	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	silent	c.1074	p.L358	0.714	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	112	0	0	44	5	10.2	-	-	-	G	97082784	C	G	97082784	2	3	389	1	0	0	0	0	0	0	0	1	5587	697	25	4		4	FAM22F	9	97082784	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	61212609	97082784	44130647	58	40023										
TXNDC8	0	genome.wustl.edu	37	chr9	113066787	113066787	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttctataacagcaaattattCttttgattcttgagaatagg	6	5	3	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	113066787	113066787	C	A	SNP	TXNDC8	ENST00000374511	human	ensembl	69_37n	-1	known	missense	c.281	p.R94I	0.998	NULL	pfam_Thioredoxin_domain	-	no_errors	TXNDC8	HGNC	ENSG00000204193	185	0	0	57	42	42.42	-	-	-	A	113066787	C	A	113066787	3	1	389	1	0	0	0	0	1	0	0	0	16898	913	32	2	74	2	TXNDC8	9	113066787	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	15984003	113066787	28146644	59	40024										
RNF208	0	genome.wustl.edu	37	chr9	140114992	140114992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gggctcagccccccactgacCcccggatggggccgtcagcg	14	18	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	140114992	140114992	C	T	SNP	RNF208	ENST00000391553	human	ensembl	69_37n	-1	known	missense	c.673	p.G225S	0.970	NULL	pfscan_Znf_RING	-	no_errors	RNF208	HGNC	ENSG00000212864	40	0	0	10	6	37.5	-	-	-	T	140114992	C	T	140114992	3	4	389	1	0	0	0	0	1	0	0	0	13561	623	22	4	116	4	RNF208	9	140114992	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	27048205	140114992	1098439	60	40025										
CSGALNACT2	0	genome.wustl.edu	37	chr10	43650986	43650986	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tcttcattcccaaattgacaAagctgaagttagcatagggg	9	8	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	43650986	43650986	A	G	SNP	CSGALNACT2	ENST00000374466	human	ensembl	69_37n	1	known	missense	c.389	p.K130R	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826	63	0	0	21	5	19.23	-	-	-	G	43650986	A	G	43650986	3	3	389	1	0	0	0	0	1	0	0	0	3971	14	1	5	391	5	CSGALNACT2	10	43650986	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09		43650986	91883761	61	40026										
KCNMA1	0	genome.wustl.edu	37	chr10	78674713	78674713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cctagttcagtgatgatgggGatgttgaccccagttgtgat	13	7	1	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	78674713	78674713	G	A	SNP	KCNMA1	ENST00000372403	human	ensembl	69_37n	-1	known	missense	c.2675	p.S892F	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNMA1	HGNC	ENSG00000156113	145	0	0	37	17	31.48	-	-	-	A	78674713	G	A	78674713	3	1	389	1	0	0	0	0	1	0	0	0	8127	1164	41	2	762	2	KCNMA1	10	78674713	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	35023727	78674713	56860034	62	40027										
PAX2	0	genome.wustl.edu	37	chr10	102584408	102584408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cctttgtgtttttccaggtcGtgacatggcgagcaccactc	10	12	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	102584408	102584408	G	A	SNP	PAX2	ENST00000370296	human	ensembl	69_37n	1	known	missense	c.992	p.R331H	1.000	pfam_Pax2_C	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891	78	0	0	7	22	75.86	-	-	-	A	102584408	G	A	102584408	3	1	389	1	0	0	0	0	1	0	0	0	11552	1145	40	1	1026	1	PAX2	10	102584408	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	23909695	102584408	32950339	63	40028										
MUC5B	0	genome.wustl.edu	37	chr11	1269544	1269544	+	Frame_Shift_Del	DEL	A	A	-													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cctggacccgcctatcacagAccaccacacccacggccacc							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	1269544	1269544	A	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	frame_shift_del	c.11443	p.T3815fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	59	0	0	3	2	33.33	-	-	-	-	1269544	A	-	1269544	7	5	389	1	0	1	0	1	0	0	0	0	10051	275	10	0	11565	0	MUC5B	11	1269544	Frame_Shift_Del	DEL	A	TCGA-AR-A24H-01A-11D-A167-09		1269544	133736972	64	40029										
ARFGAP2	0	genome.wustl.edu	37	chr11	47198382	47198382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	taaaaagagtctggatttcgGtcttgttcggctccgccgcc	11	11	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	47198382	47198382	G	A	SNP	ARFGAP2	ENST00000524782	human	ensembl	69_37n	-1	known	missense	c.23	p.T8I	0.997	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	52	0	0	15	4	21.05	-	-	-	A	47198382	G	A	47198382	3	1	389	1	0	0	0	0	1	0	0	0	852	1261	44	4	1606	4	ARFGAP2	11	47198382	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	45928838	47198382	87808134	65	40030										
OR5B3	0	genome.wustl.edu	37	chr11	58170265	58170265	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aagataaccaggagagctatAaagatattgaagctcacaac	8	7	1	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	58170265	58170265	A	G	SNP	OR5B3	ENST00000309403	human	ensembl	69_37n	-1	known	silent	c.618	p.F206	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B3	HGNC	ENSG00000172769	48	0	0	47	7	12.96	-	-	-	G	58170265	A	G	58170265	2	3	389	1	0	0	0	0	0	0	0	1	11225	359	13	5		5	OR5B3	11	58170265	Silent	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	10971883	58170265	76836251	66	40031										
DHCR7	0	genome.wustl.edu	37	chr11	71155930	71155930	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccccactgcccttgagatgcGgttctgtcattggtgacgcc	11	14	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	71155930	71155930	G	C	SNP	DHCR7	ENST00000355527	human	ensembl	69_37n	-1	known	silent	c.69	p.T23	0.000	NULL	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893	142	0	0	20	25	55.56	-	-	-	C	71155930	G	C	71155930	2	2	389	1	0	0	0	0	0	0	0	1	4513	1103	39	3		3	DHCR7	11	71155930	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	12985665	71155930	63850586	67	40032										
P4HA3	0	genome.wustl.edu	37	chr11	74000171	74000171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgagggcacacgaaacatttCctgcctgttaaaaaaaaaaa	7	8	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	74000171	74000171	C	T	SNP	P4HA3	ENST00000331597	human	ensembl	69_37n	-1	known	missense	c.722	p.G241E	1.000	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380	68	0	0	25	6	19.35	-	-	-	T	74000171	C	T	74000171	3	4	389	1	0	0	0	0	1	0	0	0	11431	855	30	2	948	2	P4HA3	11	74000171	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	2844241	74000171	61006345	68	40033										
CACNA1C	0	genome.wustl.edu	37	chr12	2711019	2711019	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttcctttgtccctccctgcaGatgactgcttatggggcttt	9	12	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	2711019	2711019	G	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	splice_site	c.2854-1	e22-1	1.000	-	-	-	no_errors	CACNA1C	HGNC	ENSG00000151067	147	0	0	57	32	35.96	-	-	-	T	2711019	G	T	2711019	5	4	389	1	0	0	0	0	0	0	1	0	2565	956	33	2	3111	2	CACNA1C	12	2711019	Splice_Site	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		2711019	131140876	69	40034										
SLC38A4	0	genome.wustl.edu	37	chr12	47172298	47172298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	acttacccgggagttgaataCaaagtatttgggttcacact	9	8	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	47172298	47172298	C	G	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	missense	c.979	p.V327L	0.993	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	53	0	0	25	12	32.43	-	-	-	G	47172298	C	G	47172298	3	3	389	1	0	0	0	0	1	0	0	0	14695	478	17	4	692	4	SLC38A4	12	47172298	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	44461279	47172298	86679597	70	40035										
ITGA5	0	genome.wustl.edu	37	chr12	54803355	54803355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctcctctccctctgagctggAcagtgaggactccaggagcc	11	15	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	54803355	54803355	A	G	SNP	ITGA5	ENST00000293379	human	ensembl	69_37n	-1	known	missense	c.376	p.S126P	0.268	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	50	0	0	3	6	66.67	-	-	-	G	54803355	A	G	54803355	3	3	389	1	0	0	0	0	1	0	0	0	7933	275	10	5	2885	5	ITGA5	12	54803355	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	7631057	54803355	79048540	71	40036										
SLC39A5	0	genome.wustl.edu	37	chr12	56625219	56625219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cggcgagaatgggacgctgaCtgcagggggcttggcgcggc	20	10	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	56625219	56625219	C	A	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	missense	c.161	p.T54N	0.985	NULL	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	44	0	0	3	9	75	-	-	-	A	56625219	C	A	56625219	3	1	389	1	0	0	0	0	1	0	0	0	14710	565	20	4	163	4	SLC39A5	12	56625219	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	1821864	56625219	77226676	72	40037										
CNOT2	0	genome.wustl.edu	37	chr12	70726585	70726585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gaacaggaatcaggcatttgGaatgaataactccttatcaa	8	7	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	70726585	70726585	G	A	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.608	p.G203E	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	117	0	0	45	33	42.31	-	-	-	A	70726585	G	A	70726585	3	1	389	1	0	0	0	0	1	0	0	0	3649	1174	41	2	630	2	CNOT2	12	70726585	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	14101366	70726585	63125310	73	40038										
FGD6	0	genome.wustl.edu	37	chr12	95501370	95501370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttcgaggttgcatcactttcCgagacagcttcatcagaatt	8	10	3	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	95501370	95501370	C	T	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.3302	p.R1101Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	129	1	0.77	100	15	13.04	-	-	-	T	95501370	C	T	95501370	3	4	389	1	0	0	0	0	1	0	0	0	5883	652	23	1	1030	1	FGD6	12	95501370	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	24774785	95501370	38350525	74	40039										
ANO4	0	genome.wustl.edu	37	chr12	101430911	101430911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccaatggctcctatgaagctGcgtttcccctgcatgaggta	10	12	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	101430911	101430911	G	T	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.880	p.A294S	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	271	0	0	80	209	72.32	-	-	-	T	101430911	G	T	101430911	3	4	389	1	0	0	0	0	1	0	0	0	698	1319	46	4	805	4	ANO4	12	101430911	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	5929541	101430911	32420984	75	40040										
GALNT9	0	genome.wustl.edu	37	chr12	132905608	132905608	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccaggcgctgcaggatggccTcacggtcccccagcgtgccc	13	18	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	132905608	132905608	T	G	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	missense	c.182	p.E61A	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	17	0	0	8	5	38.46	-	-	-	G	132905608	T	G	132905608	3	3	389	1	0	0	0	0	1	0	0	0	6270	1551	54	5	1673	5	GALNT9	12	132905608	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	31474697	132905608	946287	76	40041										
GALNT9	0	genome.wustl.edu	37	chr12	132905684	132905684	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gctcacgatgcgcacgagctCctgggagcggccctgcaggc	15	15	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	132905684	132905684	C	A	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	nonsense	c.106	p.E36*	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	23	0	0	6	4	36.36	-	-	-	A	132905684	C	A	132905684	4	1	389	1	0	0	0	0	0	1	0	0	6270	864	30	2	1749	2	GALNT9	12	132905684	Nonsense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	76	132905684	946211	77	40042										
C14orf119	0	genome.wustl.edu	37	chr14	23566911	23566911	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aatgccactatccttcccatCtctcttaccctcagtaccac	2	18	3	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	23566911	23566911	C	A	SNP	C14orf119	ENST00000319074	human	ensembl	69_37n	1	known	missense	c.44	p.S15Y	0.100	NULL	NULL	-	no_errors	C14orf119	HGNC	ENSG00000179933	134	0	0	13	20	60.61	-	-	-	A	23566911	C	A	23566911	3	1	389	1	0	0	0	0	1	0	0	0	1754	913	32	2	46	2	C14orf119	14	23566911	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		23566911	83782629	78	40043										
MYH7	0	genome.wustl.edu	37	chr14	23891449	23891449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggtccatgatgctctcctggGtcagcttcaggtcgccctcc	11	15	3	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	23891449	23891449	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.3185	p.T1062I	1.000	superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	181	0	0	26	34	56.67	-	-	-	A	23891449	G	A	23891449	3	1	389	1	0	0	0	0	1	0	0	0	10111	1261	44	4	2686	4	MYH7	14	23891449	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	324538	23891449	83458091	79	40044										
NYNRIN	0	genome.wustl.edu	37	chr14	24877309	24877309	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tggggcgactgcgctggggcCctgcccctctgctgaccccc	14	18	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	24877309	24877309	C	G	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.433	p.P145A	0.137	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	52	0	0	12	18	60	-	-	-	G	24877309	C	G	24877309	3	3	389	1	0	0	0	0	1	0	0	0	10869	623	22	4	439	4	NYNRIN	14	24877309	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	985860	24877309	82472231	80	40045										
AKAP6	0	genome.wustl.edu	37	chr14	33147618	33147618	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	accagcagcagcaagcgaaaGgaagagtttgctgatatgtc	12	8	0	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	33147618	33147618	G	C	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.2832	p.K944N	0.984	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	204	0	0	34	48	58.54	-	-	-	C	33147618	G	C	33147618	3	2	389	1	0	0	0	0	1	0	0	0	455	991	35	4	2858	4	AKAP6	14	33147618	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	8270309	33147618	74201922	81	40046										
SIX1	0	genome.wustl.edu	37	chr14	61113081	61113081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	atgctggtgggtctgcaggcCgtgactgggctgcgaggctg	19	9	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	61113081	61113081	C	T	SNP	SIX1	ENST00000247182	human	ensembl	69_37n	-1	known	missense	c.775	p.G259S	0.994	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX1	HGNC	ENSG00000126778	92	0	0	15	22	59.46	-	-	-	T	61113081	C	T	61113081	3	4	389	1	0	0	0	0	1	0	0	0	14435	652	23	1	83	1	SIX1	14	61113081	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	27965463	61113081	46236459	82	40047										
EML1	0	genome.wustl.edu	37	chr14	100384181	100384181	+	Missense_Mutation	SNP	T	T	C													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gttgcagtcggaacactcacTgggaggtaagtccatgccaa							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	100384181	100384181	T	C	SNP	EML1	ENST00000557313	human	ensembl	69_37n	1	known	missense	c.151	p.W51R	0.988	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EML1	HGNC	ENSG00000066629	149	0	0	33	21	38.89	-	-	-	C	100384181	T	C	100384181	3	2	389	1	0	0	0	0	1	0	0	0	5133	1567	55	5	1938	5	EML1	14	100384181	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	39271100	100384181	6965359	83	40048	331	2								
EML1	0	genome.wustl.edu	37	chr14	100384182	100384182	+	Missense_Mutation	SNP	G	G	T													0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttgcagtcggaacactcactGggaggtaagtccatgccaac							TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	100384182	100384182	G	T	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	missense	c.1873	p.G625W	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	147	0	0	36	21	36.84	-	-	-	T	100384182	G	T	100384182	3	4	389	1	0	0	0	0	1	0	0	0	5133	1348	47	4	1939	4	EML1	14	100384182	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	1	100384182	6965358	84	40049	331	2								
AMN	0	genome.wustl.edu	37	chr14	103395190	103395190	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cacctggcctcttcttcgtgGacgccgagcgcgtgccctgc	12	17	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	103395190	103395190	G	A	SNP	AMN	ENST00000559789	human	ensembl	69_37n	1	novel	nonsense	c.24	p.W8*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	AMN	HGNC	ENSG00000166126	55	0	0	3	6	66.67	-	-	-	A	103395190	G	A	103395190	4	1	389	1	0	0	0	0	0	1	0	0	580	1174	41	2	409	2	AMN	14	103395190	Nonsense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	3011008	103395190	3954350	85	40050										
RYR3	0	genome.wustl.edu	37	chr15	34064213	34064213	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tttggagaagacttcagaaaAcctgaaacttgggaagttca	10	6	2	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	34064213	34064213	A	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.8909	p.N2970I	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	91	0	0	13	24	63.16	-	-	-	T	34064213	A	T	34064213	3	4	389	1	0	0	0	0	1	0	0	0	13856	43	2	5	9159	5	RYR3	15	34064213	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09		34064213	68467179	86	40051										
NOP10	0	genome.wustl.edu	37	chr15	34635251	34635251	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tagactcgatctccctgctcGttgaggtaatactggagaaa	10	9	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	34635251	34635251	G	C	SNP	NOP10	ENST00000328848	human	ensembl	69_37n	-1	known	missense	c.24	p.N8K	1.000	pfam_H/ACA_rnp_Nop10	pfam_H/ACA_rnp_Nop10	-	no_errors	NOP10	HGNC	ENSG00000182117	190	0	0	21	30	58.82	-	-	-	C	34635251	G	C	34635251	3	2	389	1	0	0	0	0	1	0	0	0	10607	1136	40	3	178	3	NOP10	15	34635251	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	571038	34635251	67896141	87	40052										
ADAMTS17	0	genome.wustl.edu	37	chr15	100636566	100636566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgggccaacactcacctgtcCcccgggcgtggctgaagtcg	13	15	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	100636566	100636566	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.2132	p.G711E	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	50	0	0	8	5	38.46	-	-	-	T	100636566	C	T	100636566	3	4	389	1	0	0	0	0	1	0	0	0	262	623	22	4	1187	4	ADAMTS17	15	100636566	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	66001315	100636566	1894826	88	40053										
SYT17	0	genome.wustl.edu	37	chr16	19195047	19195047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	atgtggactctctgacagacGaggagatcctgtccaagtac	11	10	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	19195047	19195047	G	A	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	50	0	0	13	16	55.17	-	-	-	A	19195047	G	A	19195047	3	1	389	1	0	0	0	0	1	0	0	0	15565	1059	37	1	547	1	SYT17	16	19195047	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		19195047	71159706	89	40054										
GTF3C1	0	genome.wustl.edu	37	chr16	27483171	27483171	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cccggcgccggttgaccaagCtcctcttctggcactccatg	10	17	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	27483171	27483171	C	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.4424	p.S1475I	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	76	0	0	21	23	52.27	-	-	-	A	27483171	C	A	27483171	3	1	389	1	0	0	0	0	1	0	0	0	6923	797	28	4	1937	4	GTF3C1	16	27483171	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	8288124	27483171	62871582	90	40055										
NUPR1	0	genome.wustl.edu	37	chr16	28549435	28549435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gctggggcggttggtgttggCagcagcttctctcttggtgc	17	9	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	28549435	28549435	C	T	SNP	NUPR1	ENST00000324873	human	ensembl	69_37n	-1	known	missense	c.154	p.A52T	0.112	pfam_Nuclear_phosphoprot_p8_DNA-bd	pfam_Nuclear_phosphoprot_p8_DNA-bd	-	no_errors	NUPR1	HGNC	ENSG00000176046	118	1	0.83	25	26	50	-	-	-	T	28549435	C	T	28549435	3	4	389	1	0	0	0	0	1	0	0	0	10849	710	25	4	98	4	NUPR1	16	28549435	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	1066264	28549435	61805318	91	40056										
SLC7A6	0	genome.wustl.edu	37	chr16	68330554	68330554	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gcgtgtttttccccatcgtgTtctgcatatgctccgtgttt	9	11	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	68330554	68330554	T	A	SNP	SLC7A6	ENST00000219343	human	ensembl	69_37n	1	known	missense	c.1294	p.F432I	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064	234	0	0	15	43	72.88	-	-	-	A	68330554	T	A	68330554	3	1	389	1	0	0	0	0	1	0	0	0	14790	1725	60	5	1324	5	SLC7A6	16	68330554	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	39781119	68330554	22024199	92	40057										
DYNLRB2	0	genome.wustl.edu	37	chr16	80577175	80577175	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cttcctggtctctttcaggcAgaggtggaggaaaccttaaa	11	9	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	80577175	80577175	A	C	SNP	DYNLRB2	ENST00000305904	human	ensembl	69_37n	1	known	silent	c.6	p.A2	1.000	pirsf_Dynein_light_roadblock-type	pfam_Dynein_light-rel,smart_Dynein_light-rel,pirsf_Dynein_light_roadblock-type	-	no_errors	DYNLRB2	HGNC	ENSG00000168589	117	0	0	8	19	70.37	-	-	-	C	80577175	A	C	80577175	2	2	389	1	0	0	0	0	0	0	0	1	4886	175	7	5		5	DYNLRB2	16	80577175	Silent	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	12246621	80577175	9777578	93	40058										
MYH8	0	genome.wustl.edu	37	chr17	10301949	10301949	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgcagggcgtgtgccagggcGttcttggcctgcagaagtag	17	9	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	10301949	10301949	G	A	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	silent	c.3990	p.N1330	0.879	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	120	0	0	5	24	82.76	-	-	-	A	10301949	G	A	10301949	2	1	389	1	0	0	0	0	0	0	0	1	10113	1136	40	1		1	MYH8	17	10301949	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		10301949	70893261	94	40059										
ZNF830	0	genome.wustl.edu	37	chr17	33288605	33288605	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gatggcgtcctccgcctccgCccggactccggcagggaagc	14	17	0	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	33288605	33288605	C	A	SNP	ZNF830	ENST00000361952	human	ensembl	69_37n	1	known	missense	c.20	p.A7D	0.000	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783	47	0	0	27	5	15.62	-	-	-	A	33288605	C	A	33288605	3	1	389	1	0	0	0	0	1	0	0	0	18277	739	26	4	22	4	ZNF830	17	33288605	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	22986656	33288605	47906605	95	40060										
HNF1B	0	genome.wustl.edu	37	chr17	36099431	36099431	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ggcaggatgaaaacacttacGtcggaggatctctcgttgct	12	9	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	36099431	36099431	G	A	SNP	HNF1B	ENST00000225893	human	ensembl	69_37n	-1	known	nonsense	c.544	p.Q182*	1.000	pfam_HNF-1_N,superfamily_Lambda_DNA-bd_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1B	HGNC	ENSG00000108753	120	0	0	31	13	29.55	-	-	-	A	36099431	G	A	36099431	4	1	389	1	0	0	0	0	0	1	0	0	7303	1159	40	1	1161	1	HNF1B	17	36099431	Nonsense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	2810826	36099431	45095779	96	40061										
STARD3	0	genome.wustl.edu	37	chr17	37809976	37809976	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	accttcgacctgctcttcatCtccctgctctggatcatcga	6	16	5	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	37809976	37809976	C	T	SNP	STARD3	ENST00000336308	human	ensembl	69_37n	1	known	silent	c.192	p.I64	1.000	pfam_MENTAL	pfam_MENTAL,pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	136	0	0	31	21	39.62	-	-	-	T	37809976	C	T	37809976	2	4	389	1	0	0	0	0	0	0	0	1	15348	903	32	2		2	STARD3	17	37809976	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	1710545	37809976	43385234	97	40062										
SLC25A39	0	genome.wustl.edu	37	chr17	42398003	42398003	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cactcaccgtccctgagatgCcaccagccacaaagctcatg	7	17	2	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	42398003	42398003	C	A	SNP	SLC25A39	ENST00000377095	human	ensembl	69_37n	-1	known	missense	c.788	p.G263V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A39	HGNC	ENSG00000013306	94	0	0	40	13	24.53	-	-	-	A	42398003	C	A	42398003	3	1	389	1	0	0	0	0	1	0	0	0	14592	739	26	4	307	4	SLC25A39	17	42398003	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	4588027	42398003	38797207	98	40063										
ITGB3	0	genome.wustl.edu	37	chr17	45376772	45376772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ctgacacctgcatgtccagcAatgggctgctgtgcagcggc	13	13	0	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	45376772	45376772	A	G	SNP	ITGB3	ENST00000262017	human	ensembl	69_37n	1	known	missense	c.1789	p.N597D	0.929	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	64	0	0	37	7	15.91	-	-	-	G	45376772	A	G	45376772	3	3	389	1	0	0	0	0	1	0	0	0	7949	130	5	5	1831	5	ITGB3	17	45376772	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	2978769	45376772	35818438	99	40064										
WFIKKN2	0	genome.wustl.edu	37	chr17	48913406	48913406	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccgcgaagcctggcgctgccGcccatccgctattcccacgc	10	20	0	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	48913406	48913406	G	A	SNP	WFIKKN2	ENST00000311378	human	ensembl	69_37n	1	known	silent	c.108	p.P36	0.009	superfamily_Whey_acidic_protein_4-diS_core	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714	33	0	0	12	9	37.5	-	-	-	A	48913406	G	A	48913406	2	1	389	1	0	0	0	0	0	0	0	1	17456	1074	38	1		1	WFIKKN2	17	48913406	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	3536634	48913406	32281804	100	40065										
PTBP1	0	genome.wustl.edu	37	chr19	808581	808581	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	acgggcacaagctgcacgggAagcccatccgcatcacgctc	11	16	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	808581	808581	A	G	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	missense	c.1282	p.K428E	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	14	0	0	7	6	46.15	-	-	-	G	808581	A	G	808581	3	3	389	1	0	0	0	0	1	0	0	0	12805	247	9	5	1332	5	PTBP1	19	808581	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09		808581	58320402	101	40066										
LIPE	0	genome.wustl.edu	37	chr19	42907078	42907078	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ccgacgacgtctcggagtttCccctcaggctcaagtccctc	9	17	3	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	42907078	42907078	C	G	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	missense	c.2648	p.G883A	0.511	NULL	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	52	0	0	18	11	37.93	-	-	-	G	42907078	C	G	42907078	3	3	389	1	0	0	0	0	1	0	0	0	8877	855	30	2	590	2	LIPE	19	42907078	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	42098497	42907078	16221905	102	40067										
TEX101	0	genome.wustl.edu	37	chr19	43920373	43920373	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	aaggggcactttgccaggaaAccatactaataattaaagca	8	8	0	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	43920373	43920373	A	T	SNP	TEX101	ENST00000253435	human	ensembl	69_37n	1	known	missense	c.241	p.T81S	0.041	NULL	pfam_LY6_UPAR	-	no_errors	TEX101	HGNC	ENSG00000131126	90	0	0	20	22	52.38	-	-	-	T	43920373	A	T	43920373	3	4	389	1	0	0	0	0	1	0	0	0	15868	43	2	5	251	5	TEX101	19	43920373	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	1013295	43920373	15208610	103	40068										
SNRNP70	0	genome.wustl.edu	37	chr19	49610881	49610881	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tgtccgtctgccctgccccaGgaggaggcctcggtggtacc	14	15	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	49610881	49610881	G	C	SNP	SNRNP70	ENST00000221448	human	ensembl	69_37n	1	known	splice_site	c.578-1	e8-1	1.000	-	-	-	no_errors	SNRNP70	HGNC	ENSG00000104852	57	0	0	3	14	82.35	-	-	-	C	49610881	G	C	49610881	5	2	389	1	0	0	0	0	0	0	1	0	14947	1014	35	4	607	4	SNRNP70	19	49610881	Splice_Site	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	5690508	49610881	9518102	104	40069										
SIGLEC9	0	genome.wustl.edu	37	chr19	51628890	51628890	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	caacatcctcatcccaggcaCcctggagtccggctgccccc	8	20	1	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	51628890	51628890	C	A	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	missense	c.458	p.T153N	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	88	0	0	29	14	32.56	-	-	-	A	51628890	C	A	51628890	3	1	389	1	0	0	0	0	1	0	0	0	14404	507	18	4	464	4	SIGLEC9	19	51628890	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	2018009	51628890	7500093	105	40070										
RASSF2	0	genome.wustl.edu	37	chr20	4773210	4773210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gagcttggcatctggtcaccCtccggcggggcatccacctc	12	16	2	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	4773210	4773210	C	T	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	silent	c.351	p.E117	0.009	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF2	HGNC	ENSG00000101265	80	0	0	47	11	18.97	-	-	-	T	4773210	C	T	4773210	2	4	389	1	0	0	0	0	0	0	0	1	13169	680	24	4		4	RASSF2	20	4773210	Silent	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		4773210	58252310	106	40071										
RBM12	0	genome.wustl.edu	37	chr20	34241980	34241980	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cagcctcatgtggtgatcttGaccttgatcttttctgccca	8	12	4	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	34241980	34241980	G	C	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	nonsense	c.1265	p.S422*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	103	0	0	25	26	50	-	-	-	C	34241980	G	C	34241980	4	2	389	1	0	0	0	0	0	1	0	0	13196	1294	45	2	1537	2	RBM12	20	34241980	Nonsense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	29468770	34241980	28783540	107	40072										
ZFP64	0	genome.wustl.edu	37	chr20	50769649	50769649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	cggtgcagtggatacgctcgTggatgcgcagggcggccttg	18	10	0	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	50769649	50769649	T	G	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1082	p.H361P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	119	0	0	29	33	53.23	-	-	-	G	50769649	T	G	50769649	3	3	389	1	0	0	0	0	1	0	0	0	17748	1696	59	5	2158	5	ZFP64	20	50769649	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	16527669	50769649	12255871	108	40073										
TRPM2	0	genome.wustl.edu	37	chr21	45789136	45789136	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gcggtgcgggacttcagcctGagcagcagctacaaggaagg	16	10	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	21	45789136	45789136	G	C	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.681	p.L227	1.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	36	0	0	7	7	50	-	-	-	C	45789136	G	C	45789136	2	2	389	1	0	0	0	0	0	0	0	1	16682	1277	45	2		2	TRPM2	21	45789136	Silent	SNP	G	TCGA-AR-A24H-01A-11D-A167-09		45789136	2340759	109	40074										
ASMTL	0	genome.wustl.edu	37	chrX	1558027	1558027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	caatgaccacgtcgggggccCgcaggtctttctgtaagaaa	12	11	2	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	1558027	1558027	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	missense	c.236	p.R79Q	0.974	pfam_Maf,tigrfam_Maf	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	197	0	0	59	13	18.06	-	-	-	T	1558027	C	T	1558027	3	4	389	1	0	0	0	0	1	0	0	0	1050	652	23	1	1673	1	ASMTL	23	1558027	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09		1558027	153712533	110	40075										
CDKL5	0	genome.wustl.edu	37	chrX	18664154	18664154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	atgtgatggcagaagacagaGacaccattctggaccccaag	11	10	1	4			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	18664154	18664154	G	C	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.2741	p.R914T	0.005	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	102	0	0	22	27	55.1	-	-	-	C	18664154	G	C	18664154	3	2	389	1	0	0	0	0	1	0	0	0	3186	942	33	2	2811	2	CDKL5	23	18664154	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	17106127	18664154	136606406	111	40076										
CXorf21	0	genome.wustl.edu	37	chrX	30578016	30578016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	agatgacttcagcaaagggcCatattcaaaactgctctcag	8	10	3	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	30578016	30578016	C	T	SNP	CXorf21	ENST00000378962	human	ensembl	69_37n	-1	known	missense	c.457	p.G153S	1.000	NULL	NULL	-	no_errors	CXorf21	HGNC	ENSG00000120280	67	0	0	31	10	24.39	-	-	-	T	30578016	C	T	30578016	3	4	389	1	0	0	0	0	1	0	0	0	4132	594	21	4	452	4	CXorf21	23	30578016	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	11913862	30578016	124692544	112	40077										
ZNF41	0	genome.wustl.edu	37	chrX	47308257	47308257	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	ttctgggggaagactttgttGcttttgtcacattcacggga	12	7	3	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	47308257	47308257	G	C	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.942	p.S314R	0.387	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	113	0	0	16	16	50	-	-	-	C	47308257	G	C	47308257	3	2	389	1	0	0	0	0	1	0	0	0	17985	1310	46	4	1431	4	ZNF41	23	47308257	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	16730241	47308257	107962303	113	40078										
HDAC6	0	genome.wustl.edu	37	chrX	48672886	48672886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	caccgctacgagcagggtagGttctggccccacctgaaggc	13	14	1	1			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	48672886	48672886	G	T	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.888	p.R296S	0.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	118	0	0	35	40	53.33	-	-	-	T	48672886	G	T	48672886	3	4	389	1	0	0	0	0	1	0	0	0	7062	1252	44	4	884	4	HDAC6	23	48672886	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	1364629	48672886	106597674	114	40079										
ABCB7	0	genome.wustl.edu	37	chrX	74289263	74289263	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	gtagctgtctgtggtgtgatCtgaaggggagatgccatcac	15	7	3	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	74289263	74289263	C	A	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.1395	p.Q465H	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	105	0	0	6	17	73.91	-	-	-	A	74289263	C	A	74289263	3	1	389	1	0	0	0	0	1	0	0	0	46	912	32	2	890	2	ABCB7	23	74289263	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	25616377	74289263	80981297	115	40080										
DIAPH2	0	genome.wustl.edu	37	chrX	96603145	96603145	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	agactgcccgagaacagtatGaaaaactctccaccatgcac	7	13	1	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	96603145	96603145	G	C	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.2875	p.E959Q	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	114	0	0	3	11	78.57	-	-	-	C	96603145	G	C	96603145	3	2	389	1	0	0	0	0	1	0	0	0	4555	1291	45	2	2969	2	DIAPH2	23	96603145	Missense_Mutation	SNP	G	TCGA-AR-A24H-01A-11D-A167-09	22313882	96603145	58667415	116	40081										
TAF7L	0	genome.wustl.edu	37	chrX	100531448	100531448	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	atcctcatcctcatcttcatCatcctcatcctcatcatcat	0	17	9	0			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	100531448	100531448	C	T	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.1018	p.D340N	0.002	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	332	0	0	22	26	54.17	-	-	-	T	100531448	C	T	100531448	3	4	389	1	0	0	0	0	1	0	0	0	15625	826	29	2	386	2	TAF7L	23	100531448	Missense_Mutation	SNP	C	TCGA-AR-A24H-01A-11D-A167-09	3928303	100531448	54739112	117	40082										
GPRASP2	0	genome.wustl.edu	37	chrX	101971743	101971743	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	tattgaaaccttgcttaattAtccatcctctagagttagga	6	8	1	2			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	101971743	101971743	A	T	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1946	p.Y649F	0.999	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	172	0	0	15	14	48.28	-	-	-	T	101971743	A	T	101971743	3	4	389	1	0	0	0	0	1	0	0	0	6774	449	16	5	1948	5	GPRASP2	23	101971743	Missense_Mutation	SNP	A	TCGA-AR-A24H-01A-11D-A167-09	1440295	101971743	53298817	118	40083										
DKC1	0	genome.wustl.edu	37	chrX	153993196	153993196	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145299145299145	17	0.019375432851571	1.99852926757525	2.7646997170108	1.32522796352584	0.227018416057892	0.83155060263902	8	attattttgccaaagaaacaTaagaagaaaaaggagcggaa	9	4	0	3			TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	153993196	153993196	T	G	SNP	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	missense	c.39	p.H13Q	1.000	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	196	0	0	41	36	46.75	-	-	-	G	153993196	T	G	153993196	3	3	389	1	0	0	0	0	1	0	0	0	4578	1403	49	5	45	5	DKC1	23	153993196	Missense_Mutation	SNP	T	TCGA-AR-A24H-01A-11D-A167-09	52021453	153993196	1277364	119	40084										
PADI6	0	genome.wustl.edu	37	chr1	17701986	17701986	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacagctgtgctgtacctcaCtggcattggtgagtgttgct	12	10	1	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	1	17701986	17701986	C	G	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	34	0	0	12	13	52	-	-	-	G	17701986	C	G	17701986	1	3	390	0	1	0	0	0	0	0	0	0	11454	565	20	4		4	PADI6	1	17701986	RNA	SNP	C	TCGA-AR-A24K-01A-11D-A167-09		17701986	231548635	1	40085										
LIPT1	0	genome.wustl.edu	37	chr2	99778927	99778927	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tcaggaacagcttctaagatCggccggactactgcctatca	9	12	3	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	2	99778927	99778927	C	T	SNP	LIPT1	ENST00000340066	human	ensembl	69_37n	1	known	silent	c.507	p.I169	0.992	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182	45	0	0	16	16	50	-	-	-	T	99778927	C	T	99778927	2	4	390	1	0	0	0	0	0	0	0	1	8885	874	31	1		1	LIPT1	2	99778927	Silent	SNP	C	TCGA-AR-A24K-01A-11D-A167-09		99778927	143420446	2	40086										
KCNH8	0	genome.wustl.edu	37	chr3	19295241	19295241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcttgctggatttgcccgaActgaagtcatgcagaagagt	12	8	1	3			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	19295241	19295241	A	G	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.172	p.T58A	1.000	pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	62	0	0	60	39	39.39	-	-	-	G	19295241	A	G	19295241	3	3	390	1	0	0	0	0	1	0	0	0	8092	43	2	5	178	5	KCNH8	3	19295241	Missense_Mutation	SNP	A	TCGA-AR-A24K-01A-11D-A167-09		19295241	178727189	3	40087										
PRKCD	0	genome.wustl.edu	37	chr3	53223092	53223092	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agatcctacagggcctgaagTacacattctctgtggactgg	11	10	1	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	53223092	53223092	T	A	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	missense	c.1573	p.Y525N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	37	0	0	30	17	36.17	-	-	-	A	53223092	T	A	53223092	3	1	390	1	0	0	0	0	1	0	0	0	12590	1638	57	5	1631	5	PRKCD	3	53223092	Missense_Mutation	SNP	T	TCGA-AR-A24K-01A-11D-A167-09	33927851	53223092	144799338	4	40088										
PIK3CA	0	genome.wustl.edu	37	chr3	178921567	178921567	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtgaatgtaaatattcgagAcattgataaggtaaagtcaa	9	4	1	3			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	178921567	178921567	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1049	p.D350G	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	21	0	0	11	8	42.11	-	-	-	G	178921567	A	G	178921567	3	3	390	1	0	0	0	0	1	0	0	0	11987	275	10	5	1063	5	PIK3CA	3	178921567	Missense_Mutation	SNP	A	TCGA-AR-A24K-01A-11D-A167-09	125698475	178921567	19100863	5	40089										
EGF	0	genome.wustl.edu	37	chr4	110925680	110925680	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggactcagaagctgctatcgAaaaacccaaagaatccttat	7	10	1	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	4	110925680	110925680	A	G	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	missense	c.3193	p.K1065E	0.003	pirsf_Pro-epidermal_GF	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	38	0	0	31	25	44.64	-	-	-	G	110925680	A	G	110925680	3	3	390	1	0	0	0	0	1	0	0	0	4997	247	9	5	3279	5	EGF	4	110925680	Missense_Mutation	SNP	A	TCGA-AR-A24K-01A-11D-A167-09		110925680	80228596	6	40090										
MET	0	genome.wustl.edu	37	chr7	116399515	116399515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcccgagaatggtcataaatGtgcatgaagcaggaaggaac	12	7	1	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	116399515	116399515	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.2389	p.V797M	0.964	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	36	0	0	28	20	41.67	-	-	-	A	116399515	G	A	116399515	3	1	390	1	0	0	0	0	1	0	0	0	9556	1377	48	4	2423	4	MET	7	116399515	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09		116399515	42739148	7	40091										
LRGUK	0	genome.wustl.edu	37	chr7	133842882	133842882	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcacgacaattaatggcttAaacaagttaccaatcaaaat	4	8	2	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	133842882	133842882	A	G	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	silent	c.765	p.L255	0.015	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	55	0	0	44	7	13.73	-	-	-	G	133842882	A	G	133842882	2	3	390	1	0	0	0	0	0	0	0	1	9009	359	13	5		5	LRGUK	7	133842882	Silent	SNP	A	TCGA-AR-A24K-01A-11D-A167-09	17443367	133842882	25295781	8	40092										
PI15	0	genome.wustl.edu	37	chr8	75756324	75756324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgggccaaaatctatctgtaCgcactggaaggtaggaagta	12	7	2	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	8	75756324	75756324	C	T	SNP	PI15	ENST00000260113	human	ensembl	69_37n	1	known	missense	c.382	p.R128C	0.989	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558	56	0	0	91	19	17.27	-	-	-	T	75756324	C	T	75756324	3	4	390	1	0	0	0	0	1	0	0	0	11942	536	19	1	388	1	PI15	8	75756324	Missense_Mutation	SNP	C	TCGA-AR-A24K-01A-11D-A167-09		75756324	70607698	9	40093										
SETX	0	genome.wustl.edu	37	chr9	135172419	135172419	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgctttcttttgatcttcaTtgaaatctcttaagtacgca	5	8	4	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	9	135172419	135172419	T	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.5804	p.N1935S	0.996	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	66	0	0	8	36	81.82	-	-	-	C	135172419	T	C	135172419	3	2	390	1	0	0	0	0	1	0	0	0	14229	1493	52	5	2281	5	SETX	9	135172419	Missense_Mutation	SNP	T	TCGA-AR-A24K-01A-11D-A167-09		135172419	6041012	10	40094										
VCL	0	genome.wustl.edu	37	chr10	75834570	75834570	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaagctttaaaaaatcgcaAttttactgtagaaaaaatga	7	4	0	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	10	75834570	75834570	A	G	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	missense	c.692	p.N231S	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	34	0	0	29	15	34.09	-	-	-	G	75834570	A	G	75834570	3	3	390	1	0	0	0	0	1	0	0	0	17236	101	4	5	714	5	VCL	10	75834570	Missense_Mutation	SNP	A	TCGA-AR-A24K-01A-11D-A167-09		75834570	59700177	11	40095										
SPTBN2	0	genome.wustl.edu	37	chr11	66460727	66460727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctccgcctcggcggcatcgCggtagaactgctgggctcgc	14	16	0	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	11	66460727	66460727	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.4784	p.R1595H	0.429	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	22	0	0	14	5	26.32	-	-	-	T	66460727	C	T	66460727	3	4	390	1	0	0	0	0	1	0	0	0	15211	768	27	1	2448	1	SPTBN2	11	66460727	Missense_Mutation	SNP	C	TCGA-AR-A24K-01A-11D-A167-09		66460727	68545789	12	40096										
TMTC2	0	genome.wustl.edu	37	chr12	83444707	83444707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtttcttctggaagaagctcGtctcatagaagcagctgaga	11	8	3	3			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	83444707	83444707	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	missense	c.2177	p.R726H	1.000	pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	42	0	0	21	28	57.14	-	-	-	A	83444707	G	A	83444707	3	1	390	1	0	0	0	0	1	0	0	0	16356	1145	40	1	2215	1	TMTC2	12	83444707	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09		83444707	50407188	13	40097										
STAB2	0	genome.wustl.edu	37	chr12	104100711	104100711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgtggggagggcttcagcGgcacagcctgcgagacctgc	17	11	1	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	104100711	104100711	G	A	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.4138	p.G1380S	0.999	smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	34	0	0	31	13	29.55	-	-	-	A	104100711	G	A	104100711	3	1	390	1	0	0	0	0	1	0	0	0	15329	1116	39	1	4288	1	STAB2	12	104100711	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09	20656004	104100711	29751184	14	40098										
IGDCC3	0	genome.wustl.edu	37	chr15	65622726	65622726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcagcttcacctcatacactGcagtggggtctggaggaagg	14	10	3	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	65622726	65622726	G	A	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.1763	p.A588V	0.004	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	29	0	0	26	6	18.75	-	-	-	A	65622726	G	A	65622726	3	1	390	1	0	0	0	0	1	0	0	0	7622	1319	46	4	697	4	IGDCC3	15	65622726	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09		65622726	36908666	15	40099										
TP53	0	genome.wustl.edu	37	chr17	7579360	7579361	+	Frame_Shift_Ins	INS	-	-	AA													0	0	1	0	0	0	1	1	0	aatgcaagaagcccagacggINSaaaccgtagctgccctggta							TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	7579360	7579361	-	AA	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.327_326	p.R110fs	0.864:0.980	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	20	0	0	3	18	85.71	-	-	-	AA	7579361	-	AA	7579360	7	5	390	1	0	1	1	0	0	0	0	0	16477	1165	41	0	975	0	TP53	17	7579360	Frame_Shift_Ins	INS	-	TCGA-AR-A24K-01A-11D-A167-09		7579360	73615850	16	40100										
ABCA8	0	genome.wustl.edu	37	chr17	66920927	66920927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcatccatttcatcttcaaGggccacgtgatcagtctttt	8	11	5	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	66920927	66920927	G	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.1357	p.L453I	0.211	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	53	0	0	34	23	40.35	-	-	-	T	66920927	G	T	66920927	3	4	390	1	0	0	0	0	1	0	0	0	38	1000	35	4	3504	4	ABCA8	17	66920927	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09	59341567	66920927	14274283	17	40101										
EEF2	0	genome.wustl.edu	37	chr19	3983150	3983150	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caatgcgccatcggtgactcGgagggcagcagtcacctccg	13	14	1	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	3983150	3983150	G	C	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.358	p.R120G	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	20	0	0	16	8	32	-	-	-	C	3983150	G	C	3983150	3	2	390	1	0	0	0	0	1	0	0	0	4964	1124	39	3	2270	3	EEF2	19	3983150	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09		3983150	55145833	18	40102										
MPV17L2	0	genome.wustl.edu	37	chr19	18304729	18304729	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcctgcactactggtacttGtcgctggaccgcctattccc	8	15	0	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	18304729	18304729	G	A	SNP	MPV17L2	ENST00000247712	human	ensembl	69_37n	1	known	silent	c.243	p.L81	0.623	NULL	pfam_Mpv17_PMP22	-	no_errors	MPV17L2	HGNC	ENSG00000254858	44	0	0	34	17	33.33	-	-	-	A	18304729	G	A	18304729	2	1	390	1	0	0	0	0	0	0	0	1	9819	1368	48	4		4	MPV17L2	19	18304729	Silent	SNP	G	TCGA-AR-A24K-01A-11D-A167-09	14321579	18304729	40824254	19	40103										
CHST8	0	genome.wustl.edu	37	chr19	34263642	34263642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agttcgtccagtacctgctgGacgtgcaccggcccgtgggg	15	13	0	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	34263642	34263642	G	A	SNP	CHST8	ENST00000262622	human	ensembl	69_37n	1	known	missense	c.949	p.D317N	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302	16	0	0	12	9	42.86	-	-	-	A	34263642	G	A	34263642	3	1	390	1	0	0	0	0	1	0	0	0	3439	1174	41	2	959	2	CHST8	19	34263642	Missense_Mutation	SNP	G	TCGA-AR-A24K-01A-11D-A167-09	15958913	34263642	24865341	20	40104										
CYP2S1	0	genome.wustl.edu	37	chr19	41704416	41704416	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcccaggccacctccaacgtAgtctgctccctcctctttgg	8	18	2	0			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	41704416	41704416	A	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	silent	c.543	p.V181	0.001	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	36	0	0	30	19	38.78	-	-	-	T	41704416	A	T	41704416	2	4	390	1	0	0	0	0	0	0	0	1	4205	407	15	5		5	CYP2S1	19	41704416	Silent	SNP	A	TCGA-AR-A24K-01A-11D-A167-09	7440774	41704416	17424567	21	40105										
VN1R4	0	genome.wustl.edu	37	chr19	53770069	53770069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggtcacagctcatgagaaCaaaggggctgagagttggga	17	6	2	2			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	53770069	53770069	C	T	SNP	VN1R4	ENST00000311170	human	ensembl	69_37n	-1	known	missense	c.850	p.V284I	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567	40	0	0	20	15	42.86	-	-	-	T	53770069	C	T	53770069	3	4	390	1	0	0	0	0	1	0	0	0	17277	478	17	4	58	4	VN1R4	19	53770069	Missense_Mutation	SNP	C	TCGA-AR-A24K-01A-11D-A167-09	12065653	53770069	5358914	22	40106										
RRBP1	0	genome.wustl.edu	37	chr20	17641006	17641006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctggtggtgagttttcgcCatctccttgcgctggttggc	13	10	2	1			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	20	17641006	17641006	C	T	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.147	p.M49I	1.000	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	63	0	0	20	43	68.25	-	-	-	T	17641006	C	T	17641006	3	4	390	1	0	0	0	0	1	0	0	0	13764	594	21	4	2882	4	RRBP1	20	17641006	Missense_Mutation	SNP	C	TCGA-AR-A24K-01A-11D-A167-09		17641006	45384514	23	40107										
OFD1	0	genome.wustl.edu	37	chrX	13774756	13774756	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaaaacaaaaccatatgctGaatgaaaaggttaaagagat	7	5	0	3			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	X	13774756	13774756	G	T	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	silent	c.1281	p.L427	0.887	superfamily_Lipoprotein_6	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	56	0	0	31	4	11.43	-	-	-	T	13774756	G	T	13774756	2	4	390	1	0	0	0	0	0	0	0	1	10911	1277	45	2		2	OFD1	23	13774756	Silent	SNP	G	TCGA-AR-A24K-01A-11D-A167-09		13774756	141495804	24	40108										
PTCHD2	0	genome.wustl.edu	37	chr1	11591069	11591069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ccgagctggtgaagccgggtGgggcccagtgcctgccttca	16	13	1	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	11591069	11591069	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	missense	c.3208	p.G1070R	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	29	0	0	22	8	26.67	-	-	-	A	11591069	G	A	11591069	3	1	391	1	0	0	0	0	1	0	0	0	12813	1348	47	4	3266	4	PTCHD2	1	11591069	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		11591069	237659552	1	40109										
PADI2	0	genome.wustl.edu	37	chr1	17395659	17395659	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tcgatgaaggtgcattcgagGcccaggggctccaggaggcc	16	11	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	17395659	17395659	G	T	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	silent	c.1878	p.G626	0.996	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	42	0	0	35	4	10.26	-	-	-	T	17395659	G	T	17395659	2	4	391	1	0	0	0	0	0	0	0	1	11451	1190	42	4		4	PADI2	1	17395659	Silent	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	5804590	17395659	231854962	2	40110										
CD53	0	genome.wustl.edu	37	chr1	111435055	111435055	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ccataacctcccctccctcaCgctgggcaatgtgtttgtca	7	16	2	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	111435055	111435055	C	G	SNP	CD53	ENST00000271324	human	ensembl	69_37n	1	known	missense	c.152	p.T51R	0.999	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD53	HGNC	ENSG00000143119	131	0	0	97	47	32.64	-	-	-	G	111435055	C	G	111435055	3	3	391	1	0	0	0	0	1	0	0	0	3052	536	19	3	158	3	CD53	1	111435055	Missense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09	94039396	111435055	137815566	3	40111										
TTF2	0	genome.wustl.edu	37	chr1	117618034	117618034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	aactcaataagcaagccccaGaaagggggacccctcaacaa	8	13	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	117618034	117618034	G	C	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	missense	c.828	p.Q276H	0.004	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	19	0	0	21	8	27.59	-	-	-	C	117618034	G	C	117618034	3	2	391	1	0	0	0	0	1	0	0	0	16816	933	33	2	846	2	TTF2	1	117618034	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	6182979	117618034	131632587	4	40112										
CD5L	0	genome.wustl.edu	37	chr1	157805923	157805923	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cagcggtggaggccccccacCagccgcactccagatggaga	13	16	0	2			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	157805923	157805923	C	A	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	silent	c.78	p.L26	0.999	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	48	0	0	31	12	27.91	-	-	-	A	157805923	C	A	157805923	2	1	391	1	0	0	0	0	0	0	0	1	3056	581	21	4		4	CD5L	1	157805923	Silent	SNP	C	TCGA-AR-A24L-01A-11D-A167-09	40187889	157805923	91444698	5	40113										
DCAF6	0	genome.wustl.edu	37	chr1	168044671	168044671	+	Nonstop_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	atgaaaatgaggatgaggaaTaataaactctttttggcaag	10	3	1	3			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	168044671	168044671	T	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	nonstop	c.2854	p.*952K	0.355	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	74	0	0	124	51	28.81	-	-	-	A	168044671	T	A	168044671	4	1	391	1	0	0	0	0	0	0	0	0	4306	1419	49	5	2719	5	DCAF6	1	168044671	Nonstop_Mutation	SNP	T	TCGA-AR-A24L-01A-11D-A167-09	10238748	168044671	81205950	6	40114										
APOB	0	genome.wustl.edu	37	chr2	21245741	21245741	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	actggtctctttggggaaggAatgataaacttcagcttccc	10	9	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	21245741	21245741	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.2778	p.I926M	0.875	pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	44	0	0	30	13	30.23	-	-	-	C	21245741	A	C	21245741	3	2	391	1	0	0	0	0	1	0	0	0	787	242	9	5	10961	5	APOB	2	21245741	Missense_Mutation	SNP	A	TCGA-AR-A24L-01A-11D-A167-09		21245741	221953632	7	40115										
PLEK	0	genome.wustl.edu	37	chr2	68613653	68613653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ggtaactgcgtcattgattgGctggtatccaaccagtctgt	11	9	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	68613653	68613653	G	T	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	1	known	missense	c.492	p.W164C	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	65	0	0	64	22	25.58	-	-	-	T	68613653	G	T	68613653	3	4	391	1	0	0	0	0	1	0	0	0	12127	1212	42	4	510	4	PLEK	2	68613653	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	47367912	68613653	174585720	8	40116										
NMS	0	genome.wustl.edu	37	chr2	101087011	101087011	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tctactgcttctgcatgctaCagattccctcctcaggtaag	7	13	3	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	101087011	101087011	C	T	SNP	NMS	ENST00000376865	human	ensembl	69_37n	1	known	nonsense	c.61	p.Q21*	0.008	NULL	pfam_NMU_C	-	no_errors	NMS	HGNC	ENSG00000204640	169	0	0	104	53	33.76	-	-	-	T	101087011	C	T	101087011	4	4	391	1	0	0	0	0	0	1	0	0	10574	479	17	4	63	4	NMS	2	101087011	Nonsense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09	32473358	101087011	142112362	9	40117										
PDE1A	0	genome.wustl.edu	37	chr2	183088590	183088590	+	Splice_Site	DEL	C	C	-													0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ttaatactttttcagacttaCcttgtctgaatgtgaaagtt							TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	183088590	183088590	C	-	DEL	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	splice_site_del	c.824+1	e7+1	1.000	-	-	-	no_errors	PDE1A	HGNC	ENSG00000115252	73	0	0	89	39	30.23	-	-	-	-	183088590	C	-	183088590	8	5	391	1	0	1	0	1	0	0	1	0	11706	521	18	0	892	0	PDE1A	2	183088590	Splice_Site	DEL	C	TCGA-AR-A24L-01A-11D-A167-09	82001579	183088590	60110783	10	40118										
ULK4	0	genome.wustl.edu	37	chr3	41942265	41942265	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	acaagatctgagtccgtgtaGataagctctctcatctggga	10	9	4	3			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	41942265	41942265	G	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	silent	c.1239	p.I413	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	72	0	0	105	25	19.23	-	-	-	A	41942265	G	A	41942265	2	1	391	1	0	0	0	0	0	0	0	1	17075	932	33	2		2	ULK4	3	41942265	Silent	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		41942265	156080165	11	40119										
CCDC80	0	genome.wustl.edu	37	chr3	112357487	112357487	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gtctgtggcctctccctgtgCtgatccttccgggatggagg	14	12	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	112357487	112357487	C	T	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	silent	c.1266	p.Q422	0.320	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	79	0	0	53	20	27.4	-	-	-	T	112357487	C	T	112357487	2	4	391	1	0	0	0	0	0	0	0	1	2881	796	28	4		4	CCDC80	3	112357487	Silent	SNP	C	TCGA-AR-A24L-01A-11D-A167-09	70415222	112357487	85664943	12	40120										
ETV5	0	genome.wustl.edu	37	chr3	185783746	185783746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gaatccctgagggggcggggGagctgcagggacaataggtt	19	7	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	185783746	185783746	G	A	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.892	p.P298S	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	46	0	0	69	23	25	-	-	-	A	185783746	G	A	185783746	3	1	391	1	0	0	0	0	1	0	0	0	5319	1174	41	2	790	2	ETV5	3	185783746	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	73426259	185783746	12238684	13	40121										
NFKB1	0	genome.wustl.edu	37	chr4	103501694	103501694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tttttcccctgtgaacagaaGcccccaatgcatccaacttg	6	14	0	2			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	103501694	103501694	G	A	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	missense	c.733	p.A245T	1.000	superfamily_p53-like_TF_DNA-bd,prints_NF_Rel_dor,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	77	0	0	88	17	16.19	-	-	-	A	103501694	G	A	103501694	3	1	391	1	0	0	0	0	1	0	0	0	10447	971	34	4	763	4	NFKB1	4	103501694	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		103501694	87652582	14	40122										
FGA	0	genome.wustl.edu	37	chr4	155507138	155507138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ccatcttcggaggtcaccacTtctttggtaacttctttgtg	8	11	4	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	155507138	155507138	T	G	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.1443	p.E481D	0.995	pfam_Fibrinogen_aC	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	69	0	0	63	9	12.5	-	-	-	G	155507138	T	G	155507138	3	3	391	1	0	0	0	0	1	0	0	0	5876	1606	56	5	1209	5	FGA	4	155507138	Missense_Mutation	SNP	T	TCGA-AR-A24L-01A-11D-A167-09	52005444	155507138	35647138	15	40123										
TRIM60	0	genome.wustl.edu	37	chr4	165961691	165961691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gcccttgaggaataatatagAacgagttgaaaaagtgataa	10	4	0	4			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	165961691	165961691	A	G	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	1	known	missense	c.467	p.E156G	0.006	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	55	0	0	26	22	45.83	-	-	-	G	165961691	A	G	165961691	3	3	391	1	0	0	0	0	1	0	0	0	16631	246	9	5	469	5	TRIM60	4	165961691	Missense_Mutation	SNP	A	TCGA-AR-A24L-01A-11D-A167-09	10454553	165961691	25192585	16	40124										
HLA-B	0	genome.wustl.edu	37	chr6	31323974	31323974	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cagcttgtccttcccgttctCcaggtatctgcggagccact	9	15	2	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	31323974	31323974	C	T	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	nonsense	c.591	p.W197*	0.903	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	21	0	0	12	4	25	-	-	-	T	31323974	C	T	31323974	4	4	391	1	0	0	0	0	0	1	0	0	7247	864	30	2	519	2	HLA-B	6	31323974	Nonsense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		31323974	139791093	17	40125										
HLA-B	0	genome.wustl.edu	37	chr6	31324104	31324104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gcggcggtccaggagcgcagGtcctcgttcagggcgatgta	17	11	1	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	31324104	31324104	G	A	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	missense	c.461	p.T154I	0.113	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	12	0	0	6	3	33.33	-	-	-	A	31324104	G	A	31324104	3	1	391	1	0	0	0	0	1	0	0	0	7247	1252	44	4	649	4	HLA-B	6	31324104	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	130	31324104	139790963	18	40126										
ZNF76	0	genome.wustl.edu	37	chr6	35262260	35262260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tcattacctctggggctgtgGtggctgaggactcaagtgta	14	8	3	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	35262260	35262260	G	T	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	1	known	missense	c.1522	p.V508L	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029	128	0	0	119	17	12.5	-	-	-	T	35262260	G	T	35262260	3	4	391	1	0	0	0	0	1	0	0	0	18229	1261	44	4	1568	4	ZNF76	6	35262260	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	3938156	35262260	135852807	19	40127										
PKHD1L1	0	genome.wustl.edu	37	chr8	110464392	110464392	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	catatcaccatagctgaagcCaaatgtgatgttgagtattc	8	8	1	3			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	110464392	110464392	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.6390	p.A2130	0.024	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	64	0	0	48	21	30.43	-	-	-	A	110464392	C	A	110464392	2	1	391	1	0	0	0	0	0	0	0	1	12046	581	21	4		4	PKHD1L1	8	110464392	Silent	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		110464392	35899630	20	40128										
TNFRSF11B	0	genome.wustl.edu	37	chr8	119936866	119936866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tctggtcactgggtttgcatGcctttattgttttttcaatg	9	7	3	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	119936866	119936866	G	C	SNP	TNFRSF11B	ENST00000297350	human	ensembl	69_37n	-1	known	missense	c.953	p.A318G	0.007	pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	163	0	0	117	39	25	-	-	-	C	119936866	G	C	119936866	3	2	391	1	0	0	0	0	1	0	0	0	16380	1319	46	4	256	4	TNFRSF11B	8	119936866	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	9472474	119936866	26427156	21	40129										
CD72	0	genome.wustl.edu	37	chr9	35612972	35612972	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ttttctgatgcattatccatCccgacggacagcaggtgtct	9	11	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	9	35612972	35612972	C	G	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	missense	c.707	p.G236A	0.998	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	101	0	0	82	25	23.36	-	-	-	G	35612972	C	G	35612972	3	3	391	1	0	0	0	0	1	0	0	0	3063	855	30	2	384	2	CD72	9	35612972	Missense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		35612972	105600459	22	40130										
KNDC1	0	genome.wustl.edu	37	chr10	135020480	135020480	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	aagtgggctccgggccccgcTctgccccgtgaggcagtagc	15	15	1	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	10	135020480	135020480	T	A	SNP	KNDC1	ENST00000368571	human	ensembl	69_37n	1	putative	missense	c.3407	p.L1136H	0.000	NULL	superfamily_Kinase-like_dom,smart_KIND	-	no_errors	KNDC1	HGNC	ENSG00000171798	40	0	0	39	8	17.02	-	-	-	A	135020480	T	A	135020480	3	1	391	1	0	0	0	0	1	0	0	0	8479	1566	54	5		5	KNDC1	10	135020480	Missense_Mutation	SNP	T	TCGA-AR-A24L-01A-11D-A167-09		135020480	514267	23	40131										
MYO7A	0	genome.wustl.edu	37	chr11	76903324	76903324	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gggagtacaggtgtgagaagGtgagtgggagggaatcttcc	19	4	1	2			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	76903324	76903324	G	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	splice_site	c.4152+1	e30+1	1.000	-	-	-	no_errors	MYO7A	HGNC	ENSG00000137474	64	0	0	45	21	31.82	-	-	-	T	76903324	G	T	76903324	5	4	391	1	0	0	0	0	0	0	1	0	10154	1275	44	4	4305	4	MYO7A	11	76903324	Splice_Site	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		76903324	58103192	24	40132										
PIWIL4	0	genome.wustl.edu	37	chr11	94331003	94331003	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cgctttgaactagagacctgGggactgcattttggaagcca	12	9	0	2			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	94331003	94331003	G	C	SNP	PIWIL4	ENST00000299001	human	ensembl	69_37n	1	known	missense	c.1302	p.W434C	1.000	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627	116	0	0	63	46	42.2	-	-	-	C	94331003	G	C	94331003	3	2	391	1	0	0	0	0	1	0	0	0	12034	1241	43	4	1344	4	PIWIL4	11	94331003	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	17427679	94331003	40675513	25	40133										
DYNC2H1	0	genome.wustl.edu	37	chr11	103116068	103116069	+	Frame_Shift_Del	DEL	TT	TT	-													0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ggatggtgtagaacctgttcTttatccattattgagacgag							TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116068	103116069	TT	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	frame_shift_del	c.10028_10029	p.Y3344fs	1.000:0.983	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	53	0	0	57	7	10.94	-	-	-	-	103116069	TT	-	103116068	7	5	391	1	0	1	0	1	0	0	0	0	4881	1609	56	0	10290	0	DYNC2H1	11	103116068	Frame_Shift_Del	DEL	TT	TCGA-AR-A24L-01A-11D-A167-09	8785065	103116068	31890448	26	40134	332	2								
DYNC2H1	0	genome.wustl.edu	37	chr11	103116072	103116073	+	Frame_Shift_Del	DEL	TC	TC	-													0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ggtgtagaacctgttctttaTccattattgagacgagatct							TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116072	103116073	TC	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	frame_shift_del	c.10032_10033	p.P3345fs	1.000:1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	52	0	0	56	7	11.11	-	-	-	-	103116073	TC	-	103116072	7	5	391	1	0	1	0	1	0	0	0	0	4881	1442	50	0	10294	0	DYNC2H1	11	103116072	Frame_Shift_Del	DEL	TC	TCGA-AR-A24L-01A-11D-A167-09	4	103116072	31890444	27	40135	332	2								
OR10S1	0	genome.wustl.edu	37	chr11	123848195	123848195	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	aagtggtacatgggtaagctGaggtgagagtcagagcccac	15	7	1	3			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	123848195	123848195	G	T	SNP	OR10S1	ENST00000531945	human	ensembl	69_37n	-1	known	silent	c.204	p.L68	0.355	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	46	0	0	22	14	38.89	-	-	-	T	123848195	G	T	123848195	2	4	391	1	0	0	0	0	0	0	0	1	10991	1277	45	2		2	OR10S1	11	123848195	Silent	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	20732123	123848195	11158321	28	40136										
ALX1	0	genome.wustl.edu	37	chr12	85680747	85680747	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tcagttttgccaaggactgaCagctacccacaggtatgcta	9	11	1	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	12	85680747	85680747	C	A	SNP	ALX1	ENST00000316824	human	ensembl	69_37n	1	known	missense	c.648	p.D216E	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX1	HGNC	ENSG00000180318	45	0	0	40	20	33.33	-	-	-	A	85680747	C	A	85680747	3	1	391	1	0	0	0	0	1	0	0	0	556	477	17	4	658	4	ALX1	12	85680747	Missense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		85680747	48171148	29	40137										
SERPINA12	0	genome.wustl.edu	37	chr14	94953679	94953679	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	acaatctttcccaggaagagCacggaaggtattttctcgct	9	10	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	14	94953679	94953679	C	G	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	silent	c.1206	p.V402	0.039	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	24	0	0	14	12	46.15	-	-	-	G	94953679	C	G	94953679	2	3	391	1	0	0	0	0	0	0	0	1	14177	697	25	4		4	SERPINA12	14	94953679	Silent	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		94953679	12395861	30	40138										
CSPG4	0	genome.wustl.edu	37	chr15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	aagccaggctgtgcccccctCggccaccaccagtgggctga	12	17	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	75982085	75982085	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.1321	p.E441K	0.996	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	14	0	0	12	5	29.41	-	-	-	T	75982085	C	T	75982085	3	4	391	1	0	0	0	0	1	0	0	0	3992	893	31	1	5679	1	CSPG4	15	75982085	Missense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		75982085	26549307	31	40139										
CHRNB4	0	genome.wustl.edu	37	chr15	78927917	78927917	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gcttttcctccgcattggccAcgcggcagttccctgagaaa	10	14	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	78927917	78927917	A	G	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.68	p.V23A	0.542	tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	187	0	0	114	39	25.49	-	-	-	G	78927917	A	G	78927917	3	3	391	1	0	0	0	0	1	0	0	0	3422	159	6	5	1448	5	CHRNB4	15	78927917	Missense_Mutation	SNP	A	TCGA-AR-A24L-01A-11D-A167-09	2945832	78927917	23603475	32	40140										
HAPLN3	0	genome.wustl.edu	37	chr15	89424727	89424727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	ttgtcctgccgcaggtgcacGcggccttggtagtccccaaa	12	14	0	0			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	89424727	89424727	G	A	SNP	HAPLN3	ENST00000359595	human	ensembl	69_37n	-1	known	silent	c.354	p.R118	0.551	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like	-	no_errors	HAPLN3	HGNC	ENSG00000140511	22	0	0	22	5	18.52	-	-	-	A	89424727	G	A	89424727	2	1	391	1	0	0	0	0	0	0	0	1	7007	1074	38	1		1	HAPLN3	15	89424727	Silent	SNP	G	TCGA-AR-A24L-01A-11D-A167-09	10496810	89424727	13106665	33	40141										
CCDC78	0	genome.wustl.edu	37	chr16	775286	775286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cggggttcatggtgttcttgGgctgcacctgaatggaaggg	17	7	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	16	775286	775286	G	A	SNP	CCDC78	ENST00000293889	human	ensembl	69_37n	-1	known	missense	c.443	p.P148L	0.013	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004	32	0	0	34	10	22.73	-	-	-	A	775286	G	A	775286	3	1	391	1	0	0	0	0	1	0	0	0	2879	1232	43	4	913	4	CCDC78	16	775286	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		775286	89579467	34	40142										
MED24	0	genome.wustl.edu	37	chr17	38176104	38176104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	tccaggcagtccacacactcCtccatgaaccactgcacgaa	6	17	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	17	38176104	38176104	C	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	silent	c.2787	p.E929	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	33	0	0	24	27	52.94	-	-	-	T	38176104	C	T	38176104	2	4	391	1	0	0	0	0	0	0	0	1	9513	680	24	4		4	MED24	17	38176104	Silent	SNP	C	TCGA-AR-A24L-01A-11D-A167-09		38176104	43019106	35	40143										
TCF4	0	genome.wustl.edu	37	chr18	52899822	52899822	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cgaagatttcgtgtcttgcaGgttctcatcaccctcgtcat	8	12	4	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	18	52899822	52899822	G	C	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.1873	p.L625V	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	80	0	0	68	21	23.6	-	-	-	C	52899822	G	C	52899822	3	2	391	1	0	0	0	0	1	0	0	0	15790	991	35	4	460	4	TCF4	18	52899822	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		52899822	25177426	36	40144										
UNC13A	0	genome.wustl.edu	37	chr19	17728543	17728543	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gcgtctgtacaaaggtcttgAttagcaggtcggtggcctgc	14	9	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	17728543	17728543	A	G	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.4790	p.I1597T	1.000	pfam_Munc13_subgr_dom-2	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	51	0	0	52	19	26.76	-	-	-	G	17728543	A	G	17728543	3	3	391	1	0	0	0	0	1	0	0	0	17081	333	12	5	601	5	UNC13A	19	17728543	Missense_Mutation	SNP	A	TCGA-AR-A24L-01A-11D-A167-09		17728543	41400440	37	40145										
PDYN	0	genome.wustl.edu	37	chr20	1961218	1961218	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	aaaaagcccccatagcgtttGacctgctccttggggtcctc	9	14	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	1961218	1961218	G	C	SNP	PDYN	ENST00000217305	human	ensembl	69_37n	-1	known	silent	c.516	p.V172	1.000	prints_Opioid_neupept	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327	62	0	0	51	20	28.17	-	-	-	C	1961218	G	C	1961218	2	2	391	1	0	0	0	0	0	0	0	1	11772	1277	45	2		2	PDYN	20	1961218	Silent	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		1961218	61064302	38	40146										
RALGAPB	0	genome.wustl.edu	37	chr20	37177413	37177413	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	acaacagctttgtcttttacCcagaggagcaaaagcaaatc	7	10	1	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	37177413	37177413	C	G	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.2984	p.P995R	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	116	0	0	160	32	16.67	-	-	-	G	37177413	C	G	37177413	3	3	391	1	0	0	0	0	1	0	0	0	13098	623	22	4	3058	4	RALGAPB	20	37177413	Missense_Mutation	SNP	C	TCGA-AR-A24L-01A-11D-A167-09	35216195	37177413	25848107	39	40147										
MN1	0	genome.wustl.edu	37	chr22	28195783	28195783	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	gcagctgcccttcggagtcaGagggcgaaaacatgtcaaaa	12	10	2	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	22	28195783	28195783	G	C	SNP	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	missense	c.749	p.S250C	0.990	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	17	0	0	14	8	36.36	-	-	-	C	28195783	G	C	28195783	3	2	391	1	0	0	0	0	1	0	0	0	9745	942	33	2	3221	2	MN1	22	28195783	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		28195783	23108783	40	40148										
KIAA1210	0	genome.wustl.edu	37	chrX	118221786	118221786	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.1	4	0.572066951992368	1.53535353535354	2.53333333333333	0.703703703703704	0.523809523809524	1	0	cagcccgctcgaaatttgagGacagttgctggactttattt	10	9	0	1			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	X	118221786	118221786	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3407	p.S1136Y	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	47	0	0	31	4	11.43	-	-	-	T	118221786	G	T	118221786	3	4	391	1	0	0	0	0	1	0	0	0	8266	1174	41	2	1738	2	KIAA1210	23	118221786	Missense_Mutation	SNP	G	TCGA-AR-A24L-01A-11D-A167-09		118221786	37048774	41	40149										
CROCC	0	genome.wustl.edu	37	chr1	17273292	17273292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	ccgccctgcagggccggcaaCggcaggcagagcaggaggcc	17	15	0	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	17273292	17273292	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.2320	p.R774W	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	12	0	0	10	7	41.18	-	-	-	T	17273292	C	T	17273292	3	4	392	1	0	0	0	0	1	0	0	0	3923	527	19	1	2386	1	CROCC	1	17273292	Missense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09		17273292	231977329	1	40150										
UBXN11	0	genome.wustl.edu	37	chr1	26608885	26608885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	accgggactggggccgggacCgggaccgggacagggaccag	20	12	0	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	26608885	26608885	C	T	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.1468	p.G490S	0.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	9	0	0	6	4	40	-	-	-	T	26608885	C	T	26608885	3	4	392	1	0	0	0	0	1	0	0	0	17010	652	23	1	98	1	UBXN11	1	26608885	Missense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09	9335593	26608885	222641736	2	40151										
PLK3	0	genome.wustl.edu	37	chr1	45270401	45270401	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	cccgggccctgcagcctcagCtgggtatcctgcggtacttc	12	16	1	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	45270401	45270401	C	A	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	1	known	missense	c.1585	p.L529M	1.000	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	29	0	0	25	15	37.5	-	-	-	A	45270401	C	A	45270401	3	1	392	1	0	0	0	0	1	0	0	0	12171	796	28	4	1635	4	PLK3	1	45270401	Missense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09	18661516	45270401	203980220	3	40152										
PLD5	0	genome.wustl.edu	37	chr1	242383361	242383361	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	tttgtccacgatccagaaggAggactgcagccggcccttgt	12	12	0	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	242383361	242383361	A	G	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.664	p.S222P	1.000	smart_PLipase_D/transphosphatidylase	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	36	0	0	50	9	15.25	-	-	-	G	242383361	A	G	242383361	3	3	392	1	0	0	0	0	1	0	0	0	12123	304	11	5	970	5	PLD5	1	242383361	Missense_Mutation	SNP	A	TCGA-AR-A24M-01A-11D-A167-09	197112960	242383361	6867260	4	40153										
SNTG2	0	genome.wustl.edu	37	chr2	1094038	1094038	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	tctgatggctttgtctttcaGggaggttctgagcacaacgt	12	8	4	2			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	2	1094038	1094038	G	T	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	1	known	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors	SNTG2	HGNC	ENSG00000172554	73	0	0	50	26	34.21	-	-	-	T	1094038	G	T	1094038	5	4	392	1	0	0	0	0	0	0	1	0	14964	1014	35	4	281	4	SNTG2	2	1094038	Splice_Site	SNP	G	TCGA-AR-A24M-01A-11D-A167-09		1094038	242105335	5	40154										
GOLGB1	0	genome.wustl.edu	37	chr3	121416508	121416508	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	gaaacttcattatcttcttcCacctgctctttttttgcttc	3	12	4	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	121416508	121416508	C	T	SNP	GOLGB1	ENST00000489400	human	ensembl	69_37n	-1	novel	nonsense	c.2459	p.W820*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	GOLGB1	HGNC	ENSG00000173230	49	0	0	35	28	44.44	-	-	-	T	121416508	C	T	121416508	4	4	392	1	0	0	0	0	0	1	0	0	6614	581	21	4	6972	4	GOLGB1	3	121416508	Nonsense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09		121416508	76605922	6	40155										
SLC25A36	0	genome.wustl.edu	37	chr3	140675496	140675496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	ccatggctggagccagtgtcAaccgagtagtgtctcccgga	13	12	2	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	140675496	140675496	A	G	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	1	known	missense	c.169	p.N57D	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	51	0	0	24	18	41.86	-	-	-	G	140675496	A	G	140675496	3	3	392	1	0	0	0	0	1	0	0	0	14589	130	5	5	175	5	SLC25A36	3	140675496	Missense_Mutation	SNP	A	TCGA-AR-A24M-01A-11D-A167-09	19258988	140675496	57346934	7	40156										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0	45	33	42.31	-	-	-	A	178936082	G	A	178936082	3	1	392	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AR-A24M-01A-11D-A167-09	38260586	178936082	19086348	8	40157										
UTP3	0	genome.wustl.edu	37	chr4	71555017	71555017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	acgggtcgtgaaggatttggCtaaagtttcagtgaaagaga	14	4	1	3			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	71555017	71555017	C	T	SNP	UTP3	ENST00000254803	human	ensembl	69_37n	1	known	missense	c.623	p.A208V	0.746	NULL	pfam_Sas10_C,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	35	0	0	24	4	14.29	-	-	-	T	71555017	C	T	71555017	3	4	392	1	0	0	0	0	1	0	0	0	17198	797	28	4	625	4	UTP3	4	71555017	Missense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09		71555017	119599259	9	40158										
TRIM2	0	genome.wustl.edu	37	chr4	154191510	154191510	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	cagcgtgcagggtcaaagacAgccggccccccatgtcagtg	13	14	2	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	154191510	154191510	A	G	SNP	TRIM2	ENST00000338700	human	ensembl	69_37n	1	known	silent	c.54	p.T18	0.998	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654	38	0	0	21	17	44.74	-	-	-	G	154191510	A	G	154191510	2	3	392	1	0	0	0	0	0	0	0	1	16590	175	7	5		5	TRIM2	4	154191510	Silent	SNP	A	TCGA-AR-A24M-01A-11D-A167-09	82636493	154191510	36962766	10	40159										
ZNF622	0	genome.wustl.edu	37	chr5	16463793	16463793	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	gcatcctgctccaccacatcGtccattgcttcagtatcctc	5	17	1	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	16463793	16463793	G	A	SNP	ZNF622	ENST00000308683	human	ensembl	69_37n	-1	known	silent	c.684	p.D228	0.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545	57	0	0	40	17	29.82	-	-	-	A	16463793	G	A	16463793	2	1	392	1	0	0	0	0	0	0	0	1	18142	1136	40	1		1	ZNF622	5	16463793	Silent	SNP	G	TCGA-AR-A24M-01A-11D-A167-09		16463793	164451467	11	40160										
PIK3R1	0	genome.wustl.edu	37	chr5	67590467	67590467	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	gtacagcaaagaatacatagAaaagtttaaacgtgaaggca	9	5	0	3			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	67590467	67590467	A	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1529	p.E510V	1.000	superfamily_Guanylate-bd_C,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	41	0	0	30	16	34.78	-	-	-	T	67590467	A	T	67590467	3	4	392	1	0	0	0	0	1	0	0	0	11992	246	9	5	1701	5	PIK3R1	5	67590467	Missense_Mutation	SNP	A	TCGA-AR-A24M-01A-11D-A167-09	51126674	67590467	113324793	12	40161										
SLC35B2	0	genome.wustl.edu	37	chr6	44224107	44224107	+	Frame_Shift_Del	DEL	T	T	-													0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	ctgtggcacagaagagcagcTtcagggcctgccacatcggg							TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	6	44224107	44224107	T	-	DEL	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	frame_shift_del	c.332	p.K111fs	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	25	0	0	9	11	55	-	-	-	-	44224107	T	-	44224107	7	5	392	1	0	1	0	1	0	0	0	0	14665	1609	56	0	974	0	SLC35B2	6	44224107	Frame_Shift_Del	DEL	T	TCGA-AR-A24M-01A-11D-A167-09		44224107	126890960	13	40162	333	2								
SLC35B2	0	genome.wustl.edu	37	chr6	44224110	44224110	+	Missense_Mutation	SNP	A	A	T													0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	tggcacagaagagcagcttcAgggcctgccacatcggggtg							TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	6	44224110	44224110	A	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.329	p.L110Q	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	25	0	0	10	12	54.55	-	-	-	T	44224110	A	T	44224110	3	4	392	1	0	0	0	0	1	0	0	0	14665	188	7	5	977	5	SLC35B2	6	44224110	Missense_Mutation	SNP	A	TCGA-AR-A24M-01A-11D-A167-09	3	44224110	126890957	14	40163	333	2								
MRE11A	0	genome.wustl.edu	37	chr11	94209462	94209462	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	agaaaagttttacctgttctGatgaatcacaaataagttaa	6	5	2	3			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	11	94209462	94209462	G	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.652	p.Q218K	1.000	pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	59	0	0	29	19	39.58	-	-	-	T	94209462	G	T	94209462	3	4	392	1	0	0	0	0	1	0	0	0	9831	1299	45	2	1530	2	MRE11A	11	94209462	Missense_Mutation	SNP	G	TCGA-AR-A24M-01A-11D-A167-09		94209462	40797054	15	40164										
MBNL2	0	genome.wustl.edu	37	chr13	97999169	97999169	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	gtgacaacaccgtaaccgttTgtatggattacataaagggg	11	7	0	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	13	97999169	97999169	T	A	SNP	MBNL2	ENST00000376673	human	ensembl	69_37n	1	known	missense	c.652	p.C218S	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793	29	0	0	6	9	60	-	-	-	A	97999169	T	A	97999169	3	1	392	1	0	0	0	0	1	0	0	0	9425	1812	63	5	666	5	MBNL2	13	97999169	Missense_Mutation	SNP	T	TCGA-AR-A24M-01A-11D-A167-09		97999169	17170709	16	40165										
NTHL1	0	genome.wustl.edu	37	chr16	2093638	2093638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	ttgggcccaacacccggcagCgccaccagctcggccacaga	11	18	0	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2093638	2093638	C	T	SNP	NTHL1	ENST00000561841	human	ensembl	69_37n	-1	known	missense	c.535	p.A179T	0.191	pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NTHL1	HGNC	ENSG00000065057	13	0	0	13	13	50	-	-	-	T	2093638	C	T	2093638	3	4	392	1	0	0	0	0	1	0	0	0	10771	755	27	1	311	1	NTHL1	16	2093638	Missense_Mutation	SNP	C	TCGA-AR-A24M-01A-11D-A167-09		2093638	88261115	17	40166										
ABCA3	0	genome.wustl.edu	37	chr16	2345722	2345722	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	cagtgcggctccttcaccagCgtcatgtgatagccggcacc	11	15	2	1			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2345722	2345722	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	silent	c.2283	p.T761	0.121	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	29	0	0	25	7	21.88	-	-	-	T	2345722	C	T	2345722	2	4	392	1	0	0	0	0	0	0	0	1	33	755	27	1		1	ABCA3	16	2345722	Silent	SNP	C	TCGA-AR-A24M-01A-11D-A167-09	252084	2345722	88009031	18	40167										
PHLDB3	0	genome.wustl.edu	37	chr19	44008076	44008076	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.904872247913239	1.07777777777778	NA	1.07777777777778	1	1	0	accgcgtcgcggctgctctcAgtgctgctgccttctcccac	10	18	2	0			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	19	44008076	44008076	A	G	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	silent	c.195	p.T65	0.308	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	25	0	0	14	5	26.32	-	-	-	G	44008076	A	G	44008076	2	3	392	1	0	0	0	0	0	0	0	1	11927	175	7	5		5	PHLDB3	19	44008076	Silent	SNP	A	TCGA-AR-A24M-01A-11D-A167-09		44008076	15120907	19	40168										
NEGR1	0	genome.wustl.edu	37	chr1	72241932	72241932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	aagtaagagtgacgttggttCcttcattgacggtcatatca	10	7	3	3			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	72241932	72241932	C	T	SNP	NEGR1	ENST00000357731	human	ensembl	69_37n	-1	known	missense	c.458	p.G153E	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NEGR1	HGNC	ENSG00000172260	65	0	0	32	25	43.86	-	-	-	T	72241932	C	T	72241932	3	4	393	1	0	0	0	0	1	0	0	0	10389	855	30	2	626	2	NEGR1	1	72241932	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		72241932	177008689	1	40169										
CCDC18	0	genome.wustl.edu	37	chr1	93646095	93646095	+	Frame_Shift_Del	DEL	C	C	-													0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gcctccggttcccatggcttCccccaccaatgggcatcatg							TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	93646095	93646095	C	-	DEL	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	frame_shift_del	c.8	p.T5fs	0.004	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	13	0	0	4	2	33.33	-	-	-	-	93646095	C	-	93646095	7	5	393	1	0	1	0	1	0	0	0	0	2820	855	30	0	10	0	CCDC18	1	93646095	Frame_Shift_Del	DEL	C	TCGA-AR-A24N-01A-11D-A167-09	21404163	93646095	155604526	2	40170										
TP53BP2	0	genome.wustl.edu	37	chr1	223971901	223971901	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tcatcttcgtcttccctgtgGatgattgtcatgcagtctcc	8	12	5	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	223971901	223971901	G	C	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.3279	p.I1093M	0.970	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	62	0	0	37	74	66.67	-	-	-	C	223971901	G	C	223971901	3	2	393	1	0	0	0	0	1	0	0	0	16480	1164	41	2	133	2	TP53BP2	1	223971901	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	130325806	223971901	25278720	3	40171										
OR2W5	0	genome.wustl.edu	37	chr1	247655187	247655187	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	cagtggtctctctcttctacGgaaccatcatctacgtgtac	7	13	5	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	247655187	247655187	G	A	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.375	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	33	0	0	31	5	13.89	-	-	-	A	247655187	G	A	247655187	1	1	393	0	1	0	0	0	0	0	0	0	11107	1116	39	1		1	OR2W5	1	247655187	RNA	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	23683286	247655187	1595434	4	40172										
USP53	0	genome.wustl.edu	37	chr4	120193097	120193097	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tatgaaagcagtgatcacatCagtaatggttctactaattt	7	6	3	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	4	120193097	120193097	C	T	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	silent	c.2082	p.I694	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	32	0	0	18	12	40	-	-	-	T	120193097	C	T	120193097	2	4	393	1	0	0	0	0	0	0	0	1	17181	816	29	2		2	USP53	4	120193097	Silent	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		120193097	70961179	5	40173										
PRR16	0	genome.wustl.edu	37	chr5	120022380	120022380	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ccacagaagacgatcttgagGaagtcaaccactacaaccgt	8	12	2	3			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	120022380	120022380	G	A	SNP	PRR16	ENST00000407149	human	ensembl	69_37n	1	known	silent	c.891	p.R297	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838	27	0	0	5	5	50	-	-	-	A	120022380	G	A	120022380	2	1	393	1	0	0	0	0	0	0	0	1	12670	1165	41	2		2	PRR16	5	120022380	Silent	SNP	G	TCGA-AR-A24N-01A-11D-A167-09		120022380	60892880	6	40174										
PCDHGA11	0	genome.wustl.edu	37	chr5	140802650	140802650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	cagcgagccgggactcttcgCggtgggggagcacacgggcg	19	12	1	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	140802650	140802650	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.1856	p.A619V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	32	0	0	18	9	33.33	-	-	-	T	140802650	C	T	140802650	3	4	393	1	0	0	0	0	1	0	0	0	11625	768	27	1	1858	1	PCDHGA11	5	140802650	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	20780270	140802650	40112610	7	40175										
MLL3	0	genome.wustl.edu	37	chr7	151860728	151860728	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tgttgtgtgctgctggtgctGaagctgctgtggcaccatgg	16	8	0	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	7	151860728	151860728	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.9934	p.Q3312*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	159	0	0	75	55	42.31	-	-	-	A	151860728	G	A	151860728	4	1	393	1	0	0	0	0	0	1	0	0	9693	1299	45	2	4869	2	MLL3	7	151860728	Nonsense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09		151860728	7277935	8	40176										
KCNK9	0	genome.wustl.edu	37	chr8	140714982	140714982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tgatgaccgtgatcgcaaagTagaaggagccggcgaatttc	13	8	0	4			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	140714982	140714982	T	C	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.254	p.Y85C	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	38	0	0	70	15	17.24	-	-	-	C	140714982	T	C	140714982	3	2	393	1	0	0	0	0	1	0	0	0	8126	1638	57	5	878	5	KCNK9	8	140714982	Missense_Mutation	SNP	T	TCGA-AR-A24N-01A-11D-A167-09		140714982	5649040	9	40177										
ZNF623	0	genome.wustl.edu	37	chr8	144732952	144732952	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ggaaggcattccgtcatcgcTcagaccttattgaacaccag	9	12	2	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	144732952	144732952	T	C	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	missense	c.910	p.S304P	0.036	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	71	0	0	36	103	73.57	-	-	-	C	144732952	T	C	144732952	3	2	393	1	0	0	0	0	1	0	0	0	18143	1551	54	5	912	5	ZNF623	8	144732952	Missense_Mutation	SNP	T	TCGA-AR-A24N-01A-11D-A167-09	4017970	144732952	1631070	10	40178										
CACNA1B	0	genome.wustl.edu	37	chr9	140865931	140865931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gttccggttttttatccggcGcatggtgaaggctcagagct	13	9	1	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	9	140865931	140865931	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.1433	p.R478H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	106	1	0.93	56	37	39.78	-	-	-	A	140865931	G	A	140865931	3	1	393	1	0	0	0	0	1	0	0	0	2564	1087	38	1	1472	1	CACNA1B	9	140865931	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09		140865931	347500	11	40179										
GATA3	0	genome.wustl.edu	37	chr10	8115703	8115703	+	Frame_Shift_Del	DEL	T	T	-													0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	aaaattgatctttgtttagaTtaacagacccctgactatga							TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	10	8115703	8115703	T	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1052	p.N352fs	1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	28	0	0	14	5	26.32	-	-	-	-	8115703	T	-	8115703	7	5	393	1	0	1	0	1	0	0	0	0	6305	1507	52	0	1070	0	GATA3	10	8115703	Frame_Shift_Del	DEL	T	TCGA-AR-A24N-01A-11D-A167-09		8115703	127419044	12	40180										
MUC5B	0	genome.wustl.edu	37	chr11	1251806	1251806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	aactgcctgaaagcggtgacGctcagcctggacggcgggga	16	11	1	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	1251806	1251806	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.1455	p.T485	0.192	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	18	0	0	10	13	54.17	-	-	-	A	1251806	G	A	1251806	2	1	393	1	0	0	0	0	0	0	0	1	10051	1074	38	1		1	MUC5B	11	1251806	Silent	SNP	G	TCGA-AR-A24N-01A-11D-A167-09		1251806	133754710	13	40181										
UBQLN3	0	genome.wustl.edu	37	chr11	5530467	5530467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	aggacttgggccctgggtagGgacagaggcagctgggcact	18	9	0	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	5530467	5530467	G	A	SNP	UBQLN3	ENST00000311659	human	ensembl	69_37n	-1	known	missense	c.322	p.P108S	0.840	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520	53	0	0	37	13	26	-	-	-	A	5530467	G	A	5530467	3	1	393	1	0	0	0	0	1	0	0	0	16995	1232	43	4	1649	4	UBQLN3	11	5530467	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	4278661	5530467	129476049	14	40182										
C11orf24	0	genome.wustl.edu	37	chr11	68031210	68031210	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ataaggacaaggagaaaatcCaaatgagcacaagagctgtc	10	7	0	3			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	68031210	68031210	C	G	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	missense	c.26	p.W9S	0.001	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	31	0	0	23	7	23.33	-	-	-	G	68031210	C	G	68031210	3	3	393	1	0	0	0	0	1	0	0	0	1646	595	21	4	1331	4	C11orf24	11	68031210	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	62500743	68031210	66975306	15	40183										
KCNA5	0	genome.wustl.edu	37	chr12	5154181	5154181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gccaccctccggcgccccacCagcctcccgcgcccgcccct	8	27	0	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	5154181	5154181	C	A	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.868	p.Q290K	0.135	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	23	0	0	10	7	41.18	-	-	-	A	5154181	C	A	5154181	3	1	393	1	0	0	0	0	1	0	0	0	8060	595	21	4	870	4	KCNA5	12	5154181	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		5154181	128697714	16	40184										
RECQL	0	genome.wustl.edu	37	chr12	21639494	21639494	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tggtcttccataagagagatCaatgggcaaatgacgagtgt	12	6	2	3			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	21639494	21639494	C	T	SNP	RECQL	ENST00000421138	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	49	0	0	16	16	50	-	-	-	T	21639494	C	T	21639494	2	4	393	1	0	0	0	0	0	0	0	1	13284	825	29	2		2	RECQL	12	21639494	Silent	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	16485313	21639494	112212401	17	40185										
UBC	0	genome.wustl.edu	37	chr12	125396630	125396631	+	Frame_Shift_Ins	INS	-	-	G													0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	agggatgccttccttgtcttINSggatctttgccttgacattc							TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	125396630	125396631	-	G	INS	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1688_1687	p.Q563fs	1.000:1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	43	0	0	22	13	37.14	-	-	-	G	125396631	-	G	125396630	7	5	393	1	0	1	1	0	0	0	0	0	16939	1812	63	0	373	0	UBC	12	125396630	Frame_Shift_Ins	INS	-	TCGA-AR-A24N-01A-11D-A167-09	103757136	125396630	8455265	18	40186										
SAMD4A	0	genome.wustl.edu	37	chr14	55169153	55169153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gatgacaagctcaatgggtgGcagaactctcgggattctgg	14	8	3	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	55169153	55169153	G	T	SNP	SAMD4A	ENST00000392067	human	ensembl	69_37n	1	known	missense	c.570	p.W190C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	34	0	0	11	14	56	-	-	-	T	55169153	G	T	55169153	3	4	393	1	0	0	0	0	1	0	0	0	13907	1212	42	4	573	4	SAMD4A	14	55169153	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09		55169153	52180387	19	40187										
VRK1	0	genome.wustl.edu	37	chr14	97299833	97299833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ctcgtgtaaaagcagctcaaGctggaagacagagctctgca	11	10	2	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	97299833	97299833	G	A	SNP	VRK1	ENST00000216639	human	ensembl	69_37n	1	known	missense	c.25	p.A9T	0.120	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK1	HGNC	ENSG00000100749	60	0	0	24	18	42.86	-	-	-	A	97299833	G	A	97299833	3	1	393	1	0	0	0	0	1	0	0	0	17316	971	34	4	27	4	VRK1	14	97299833	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	42130680	97299833	10049707	20	40188										
STUB1	0	genome.wustl.edu	37	chr16	731865	731865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gtccgggcccagcaggcctgCattgaggccaagcacgtgag	15	13	0	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	731865	731865	C	T	SNP	STUB1	ENST00000566408	human	ensembl	69_37n	1	putative	missense	c.314	p.A105V	1.000	NULL	pfam_Ubox_domain,smart_Ubox_domain,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STUB1	HGNC	ENSG00000103266	29	0	0	16	20	55.56	-	-	-	T	731865	C	T	731865	3	4	393	1	0	0	0	0	1	0	0	0	15426	718	25	4	611	4	STUB1	16	731865	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		731865	89622888	21	40189										
UBN1	0	genome.wustl.edu	37	chr16	4924371	4924371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gcggccttgctaaccctcctCctgtcaacctggaggactca	9	16	2	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	4924371	4924371	C	T	SNP	UBN1	ENST00000262376	human	ensembl	69_37n	1	known	missense	c.1960	p.P654S	0.096	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900	17	0	0	25	8	24.24	-	-	-	T	4924371	C	T	4924371	3	4	393	1	0	0	0	0	1	0	0	0	16989	855	30	2	2014	2	UBN1	16	4924371	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	4192506	4924371	85430382	22	40190										
CWC25	0	genome.wustl.edu	37	chr17	36977158	36977158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ccagctcctcacttacttgaCggccccaacatcctccgcat	5	19	1	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	36977158	36977158	C	T	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	missense	c.187	p.V63I	0.998	NULL	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	40	0	0	33	18	35.29	-	-	-	T	36977158	C	T	36977158	3	4	393	1	0	0	0	0	1	0	0	0	4100	536	19	1	1126	1	CWC25	17	36977158	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		36977158	44218052	23	40191										
NPLOC4	0	genome.wustl.edu	37	chr17	79526303	79526303	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ccctaggtcctggggaggctGcacatctcgcagtggcctgt	14	13	1	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	79526303	79526303	G	A	SNP	NPLOC4	ENST00000331134	human	ensembl	69_37n	-1	known	silent	c.1809	p.C603	1.000	smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,smart_Znf_RanBP2,pirsf_PolyUb_recognition_cplx_Npl4,pfscan_Znf_RanBP2	-	no_errors	NPLOC4	HGNC	ENSG00000182446	18	0	0	19	4	17.39	-	-	-	A	79526303	G	A	79526303	2	1	393	1	0	0	0	0	0	0	0	1	10659	1311	46	4		4	NPLOC4	17	79526303	Silent	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	42549145	79526303	1668907	24	40192										
FOXK2	0	genome.wustl.edu	37	chr17	80525932	80525932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	actttttctcttccacagcgCtgcaaactcctgcccctcca	4	18	1	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	80525932	80525932	C	T	SNP	FOXK2	ENST00000335255	human	ensembl	69_37n	1	known	missense	c.617	p.A206V	1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,prints_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568	39	0	0	16	12	42.86	-	-	-	T	80525932	C	T	80525932	3	4	393	1	0	0	0	0	1	0	0	0	6063	797	28	4	627	4	FOXK2	17	80525932	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	999629	80525932	669278	25	40193										
ZNF429	0	genome.wustl.edu	37	chr19	21719514	21719514	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ctcagcccttactaaccataAgagaatttatgttggtgaga	8	8	1	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	21719514	21719514	A	G	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.659	p.K220R	0.713	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	81	0	0	35	9	20.45	-	-	-	G	21719514	A	G	21719514	3	3	393	1	0	0	0	0	1	0	0	0	17998	72	3	5	673	5	ZNF429	19	21719514	Missense_Mutation	SNP	A	TCGA-AR-A24N-01A-11D-A167-09		21719514	37409469	26	40194										
ZNF285	0	genome.wustl.edu	37	chr19	44891754	44891754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	ccgcattacgtttttcaaccGttgatttcatacccaagttt	5	11	2	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	44891754	44891754	G	A	SNP	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	missense	c.653	p.T218M	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	41	0	0	28	12	30	-	-	-	A	44891754	G	A	44891754	3	1	393	1	0	0	0	0	1	0	0	0	17918	1145	40	1	1123	1	ZNF285	19	44891754	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	23172240	44891754	14237229	27	40195										
PRRG2	0	genome.wustl.edu	37	chr19	50091757	50091757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tccctactttcctgcagggcGtggacgagtggatgtggcca	14	11	0	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	50091757	50091757	G	A	SNP	PRRG2	ENST00000246794	human	ensembl	69_37n	1	known	missense	c.305	p.R102H	0.245	superfamily_GLA_domain	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG2	HGNC	ENSG00000126460	31	0	0	27	10	27.03	-	-	-	A	50091757	G	A	50091757	3	1	393	1	0	0	0	0	1	0	0	0	12686	1145	40	1	319	1	PRRG2	19	50091757	Missense_Mutation	SNP	G	TCGA-AR-A24N-01A-11D-A167-09	5200003	50091757	9037226	28	40196										
SHANK1	0	genome.wustl.edu	37	chr19	51165718	51165718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gcagcgaggggctgggggccCggcggagcagagggggccgc	24	11	0	1			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	51165718	51165718	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.6014	p.R2005Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	18	0	0	14	7	33.33	-	-	-	T	51165718	C	T	51165718	3	4	393	1	0	0	0	0	1	0	0	0	14353	652	23	1	499	1	SHANK1	19	51165718	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	1073961	51165718	7963265	29	40197										
ZNF548	0	genome.wustl.edu	37	chr19	57908526	57908526	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	gtgatgctggagaatttggcCcttttgtcctcactaggtaa	11	8	1	2			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	57908526	57908526	C	T	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	silent	c.162	p.A54	0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	140	1	0.71	93	71	43.29	-	-	-	T	57908526	C	T	57908526	2	4	393	1	0	0	0	0	0	0	0	1	18076	610	22	4		4	ZNF548	19	57908526	Silent	SNP	C	TCGA-AR-A24N-01A-11D-A167-09	6742808	57908526	1220457	30	40198										
TGM2	0	genome.wustl.edu	37	chr20	36776418	36776418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.884157066679131	1.01961823966066	0	1.11672473867596	0.1	0.5224358974359	0	tgctgcggcgggagcagtcaCggccggcgttcttcaggaac	16	12	3	0			TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	20	36776418	36776418	C	T	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	missense	c.626	p.R209H	0.003	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	13	0	0	12	5	29.41	-	-	-	T	36776418	C	T	36776418	3	4	393	1	0	0	0	0	1	0	0	0	15925	536	19	1	1505	1	TGM2	20	36776418	Missense_Mutation	SNP	C	TCGA-AR-A24N-01A-11D-A167-09		36776418	26249102	31	40199										
SLC30A10	0	genome.wustl.edu	37	chr1	220091665	220091665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	cagcggtctccttgataagcGggaaggcagatgacaaaatg	13	8	1	3			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	1	220091665	220091665	G	A	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.890	p.P297L	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	56	0	0	64	18	21.95	-	-	-	A	220091665	G	A	220091665	3	1	394	1	0	0	0	0	1	0	0	0	14643	1116	39	1	575	1	SLC30A10	1	220091665	Missense_Mutation	SNP	G	TCGA-AR-A24O-01A-11D-A167-09		220091665	29158956	1	40200										
DOCK10	0	genome.wustl.edu	37	chr2	225661753	225661753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	ctcatgaaaaagtacagaagGgctgaggcttctgtctgagt	12	7	3	4			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	2	225661753	225661753	G	C	SNP	DOCK10	ENST00000409802	human	ensembl	69_37n	-1	known	missense	c.931	p.P311A	0.930	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK10	HGNC	ENSG00000135905	48	0	0	47	6	11.32	-	-	-	C	225661753	G	C	225661753	3	2	394	1	0	0	0	0	1	0	0	0	4720	1219	43	4	1861	4	DOCK10	2	225661753	Missense_Mutation	SNP	G	TCGA-AR-A24O-01A-11D-A167-09		225661753	17537620	2	40201										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0	44	11	20	-	-	-	T	178952085	A	T	178952085	3	4	394	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A24O-01A-11D-A167-09		178952085	19070345	3	40202										
PCYT1A	0	genome.wustl.edu	37	chr3	195968901	195968901	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	acacatcataatcccgcacaAttcgggtgatgatgtctgat	8	10	2	3			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	195968901	195968901	A	C	SNP	PCYT1A	ENST00000292823	human	ensembl	69_37n	-1	known	missense	c.626	p.I209S	1.000	NULL	pfam_Cytidylyltransf,superfamily_NA-bd_OB-fold-like,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1A	HGNC	ENSG00000161217	56	0	0	51	8	13.56	-	-	-	C	195968901	A	C	195968901	3	2	394	1	0	0	0	0	1	0	0	0	11683	101	4	5	489	5	PCYT1A	3	195968901	Missense_Mutation	SNP	A	TCGA-AR-A24O-01A-11D-A167-09	17016816	195968901	2053529	4	40203										
FGF18	0	genome.wustl.edu	37	chr5	170883788	170883788	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	accaagaggtcccgtcggatCcggcccacacaccctgccta	9	18	0	1			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	5	170883788	170883788	C	A	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	silent	c.603	p.I201	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	12	0	0	10	4	28.57	-	-	-	A	170883788	C	A	170883788	2	1	394	1	0	0	0	0	0	0	0	1	5892	845	30	2		2	FGF18	5	170883788	Silent	SNP	C	TCGA-AR-A24O-01A-11D-A167-09		170883788	10031472	5	40204										
PKHD1L1	0	genome.wustl.edu	37	chr8	110454342	110454342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	tttcttagagggataggataTaggattttttctgtctccag	10	5	3	1			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	110454342	110454342	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.4311	p.Y1437	0.842	superfamily_Cupredoxin	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	75	0	0	65	22	25.29	-	-	-	C	110454342	T	C	110454342	2	2	394	1	0	0	0	0	0	0	0	1	12046	1413	49	5		5	PKHD1L1	8	110454342	Silent	SNP	T	TCGA-AR-A24O-01A-11D-A167-09		110454342	35909680	6	40205										
KCNQ3	0	genome.wustl.edu	37	chr8	133142164	133142164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	ccttggttgggtaatactccGtgacctgcacctgcaaccgt	10	13	0	1			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	133142164	133142164	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.1964	p.T655M	0.009	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	36	0	0	33	13	28.26	-	-	-	A	133142164	G	A	133142164	3	1	394	1	0	0	0	0	1	0	0	0	8138	1145	40	1	658	1	KCNQ3	8	133142164	Missense_Mutation	SNP	G	TCGA-AR-A24O-01A-11D-A167-09	22687822	133142164	13221858	7	40206										
SENP1	0	genome.wustl.edu	37	chr12	48482684	48482684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	atttctccattggccatttgCactctggccaaaggttctta	7	11	3	0			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	48482684	48482684	C	T	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.280	p.A94T	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	130	0	0	99	30	23.26	-	-	-	T	48482684	C	T	48482684	3	4	394	1	0	0	0	0	1	0	0	0	14134	710	25	4	1707	4	SENP1	12	48482684	Missense_Mutation	SNP	C	TCGA-AR-A24O-01A-11D-A167-09		48482684	85369211	8	40207										
APPL2	0	genome.wustl.edu	37	chr12	105605050	105605050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	ttgtatgataggtagaaccaTtgtgtctgccaactgtttag	10	6	1	2			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	105605050	105605050	T	C	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	missense	c.331	p.M111V	0.996	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	74	0	0	87	10	10.31	-	-	-	C	105605050	T	C	105605050	3	2	394	1	0	0	0	0	1	0	0	0	820	1493	52	5	1731	5	APPL2	12	105605050	Missense_Mutation	SNP	T	TCGA-AR-A24O-01A-11D-A167-09	57122366	105605050	28246845	9	40208										
EFNB2	0	genome.wustl.edu	37	chr13	107145608	107145608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	acagcgtggtcgtgtgctgcGgcgagtgcttcctgtgtctc	15	11	1	0			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	107145608	107145608	G	A	SNP	EFNB2	ENST00000245323	human	ensembl	69_37n	-1	known	missense	c.782	p.P261L	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266	49	0	0	54	7	11.48	-	-	-	A	107145608	G	A	107145608	3	1	394	1	0	0	0	0	1	0	0	0	4991	1116	39	1	223	1	EFNB2	13	107145608	Missense_Mutation	SNP	G	TCGA-AR-A24O-01A-11D-A167-09		107145608	8024270	10	40209										
TUBGCP3	0	genome.wustl.edu	37	chr13	113212589	113212589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	gctgatgccactgctgcccaCgctgccggagctctgggctg	14	15	1	1			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	113212589	113212589	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.469	p.V157M	0.021	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	51	0	0	39	11	22	-	-	-	T	113212589	C	T	113212589	3	4	394	1	0	0	0	0	1	0	0	0	16864	536	19	1	2326	1	TUBGCP3	13	113212589	Missense_Mutation	SNP	C	TCGA-AR-A24O-01A-11D-A167-09	6066981	113212589	1957289	11	40210										
FOXA1	0	genome.wustl.edu	37	chr14	38061463	38061463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	ggccatggtgatgagcgagaTgtacgagtagggcggcttgg	19	6	0	3			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	14	38061463	38061463	T	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.526	p.I176V	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	51	0	0	53	7	11.67	-	-	-	C	38061463	T	C	38061463	3	2	394	1	0	0	0	0	1	0	0	0	6035	1464	51	5	896	5	FOXA1	14	38061463	Missense_Mutation	SNP	T	TCGA-AR-A24O-01A-11D-A167-09		38061463	69288077	12	40211										
POLG	0	genome.wustl.edu	37	chr15	89876861	89876861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	gctgctgctgctgctgctgcCgccgccgctgcccgtcgctg	14	18	0	0			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	15	89876861	89876861	C	T	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.125	p.R42Q	0.003	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	9	0	0	6	4	40	-	-	-	T	89876861	C	T	89876861	3	4	394	1	0	0	0	0	1	0	0	0	12274	652	23	1	3682	1	POLG	15	89876861	Missense_Mutation	SNP	C	TCGA-AR-A24O-01A-11D-A167-09		89876861	12654531	13	40212										
ZNF75A	0	genome.wustl.edu	37	chr16	3363109	3363109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	aggaagaatgggagttattgGatcccactcagaaggccctc	12	9	1	2			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	16	3363109	3363109	G	A	SNP	ZNF75A	ENST00000574298	human	ensembl	69_37n	1	known	missense	c.34	p.D12N	0.981	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086	81	0	0	88	11	11.11	-	-	-	A	3363109	G	A	3363109	3	1	394	1	0	0	0	0	1	0	0	0	18227	1174	41	2	36	2	ZNF75A	16	3363109	Missense_Mutation	SNP	G	TCGA-AR-A24O-01A-11D-A167-09		3363109	86991644	14	40213										
CHD6	0	genome.wustl.edu	37	chr20	40065975	40065975	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	cttctttatctgtgttgcctCtaaataaaagtaaaaaaagg	6	6	3	0			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	20	40065975	40065975	C	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	splice_site	c.4008-1	e26-1	1.000	-	-	-	no_errors	CHD6	HGNC	ENSG00000124177	63	0	0	66	22	25	-	-	-	G	40065975	C	G	40065975	5	3	394	1	0	0	0	0	0	0	1	0	3358	927	32	2	4184	2	CHD6	20	40065975	Splice_Site	SNP	C	TCGA-AR-A24O-01A-11D-A167-09		40065975	22959545	15	40214										
NHS	0	genome.wustl.edu	37	chrX	17705913	17705913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.965830697851541	0.804651162790698	4.02325581395349	0	1	1	0	gagtgtgtactaccgcgcccCgtggcaccagcagcgcaaca	12	15	0	0			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	X	17705913	17705913	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.617	p.P206L	0.904	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	45	0	0	53	16	23.19	-	-	-	T	17705913	C	T	17705913	3	4	394	1	0	0	0	0	1	0	0	0	10483	652	23	1	661	1	NHS	23	17705913	Missense_Mutation	SNP	C	TCGA-AR-A24O-01A-11D-A167-09		17705913	137564647	16	40215										
VPS13D	0	genome.wustl.edu	37	chr1	12387893	12387893	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggattgtgatgttcctctcGctgaactcaccttttcccgt	8	12	2	2			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	12387893	12387893	G	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.8179	p.A2727P	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	83	0	0	44	20	31.25	-	-	-	C	12387893	G	C	12387893	3	2	395	1	0	0	0	0	1	0	0	0	17289	1087	38	3	8317	3	VPS13D	1	12387893	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		12387893	236862728	1	40216										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939485	12939485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccctcactctgttcatcagCtcagccctaatttgagcaaa	5	14	5	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	12939485	12939485	C	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.1317	p.E439D	0.001	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	98	0	0	41	18	30.51	-	-	-	A	12939485	C	A	12939485	3	1	395	1	0	0	0	0	1	0	0	0	12517	796	28	4	123	4	PRAMEF4	1	12939485	Missense_Mutation	SNP	C	TCGA-AR-A24P-01A-11D-A167-09	551592	12939485	236311136	2	40217										
CCDC19	0	genome.wustl.edu	37	chr1	159857798	159857798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttctttcgtgtcatcactgCatcctaagggagaccagtct	8	12	4	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	159857798	159857798	C	T	SNP	CCDC19	ENST00000368099	human	ensembl	69_37n	-1	known	missense	c.421	p.A141T	0.998	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085	72	0	0	50	10	16.67	-	-	-	T	159857798	C	T	159857798	3	4	395	1	0	0	0	0	1	0	0	0	2821	710	25	4	1266	4	CCDC19	1	159857798	Missense_Mutation	SNP	C	TCGA-AR-A24P-01A-11D-A167-09	146918313	159857798	89392823	3	40218										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185276771	185276771	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagctggtaacatccattctAgacagtaaataatcaccaca	5	11	2	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	185276771	185276771	A	T	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	silent	c.381	p.S127	0.853	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	40	0	0	24	23	48.94	-	-	-	T	185276771	A	T	185276771	2	4	395	1	0	0	0	0	0	0	0	1	7984	407	15	5		5	IVNS1ABP	1	185276771	Silent	SNP	A	TCGA-AR-A24P-01A-11D-A167-09	25418973	185276771	63973850	4	40219										
MGAT4A	0	genome.wustl.edu	37	chr2	99256673	99256676	+	Frame_Shift_Del	DEL	TCTG	TCTG	-													0	0	1	0	0	0	1	1	0	gcgaattcgcagatttgcttTctgtctatcacaatgtttct							TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	TCTG	TCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	2	99256673	99256676	TCTG	-	DEL	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	frame_shift_del	c.1039_1036	p.Q346fs	1.000:1.000:1.000:1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	85	0	0	37	15	28.3	-	-	-	-	99256676	TCTG	-	99256673	7	5	395	1	0	1	0	1	0	0	0	0	9616	1792	62	0	671	0	MGAT4A	2	99256673	Frame_Shift_Del	DEL	TCTG	TCGA-AR-A24P-01A-11D-A167-09		99256673	143942700	5	40220										
GTF3C3	0	genome.wustl.edu	37	chr2	197662520	197662520	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagcacataattttaacataCcttcattgacatctttgtct	3	9	3	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	2	197662520	197662520	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	splice_site	c.214+1	e2+1	1.000	-	-	-	no_errors	GTF3C3	HGNC	ENSG00000119041	72	0	0	37	32	46.38	-	-	-	T	197662520	C	T	197662520	5	4	395	1	0	0	0	0	0	0	1	0	6925	521	18	4	2513	4	GTF3C3	2	197662520	Splice_Site	SNP	C	TCGA-AR-A24P-01A-11D-A167-09	98405847	197662520	45536853	6	40221										
HNRPDL	0	genome.wustl.edu	37	chr4	83350516	83350516	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgtcggcaggggggtgctGgcgcgcagtccgggtcgcgg	22	11	0	0			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	4	83350516	83350516	G	A	SNP	HNRPDL	ENST00000295470	human	ensembl	69_37n	-1	known	nonsense	c.328	p.Q110*	0.989	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRPDL	HGNC	ENSG00000152795	33	0	0	15	6	28.57	-	-	-	A	83350516	G	A	83350516	4	1	395	1	0	0	0	0	0	1	0	0	7327	1357	47	4	962	4	HNRPDL	4	83350516	Nonsense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		83350516	107803760	7	40222										
FAM81B	0	genome.wustl.edu	37	chr5	94772583	94772583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatggtccagggggattatcGccacgaaatgaaccttttgg	13	8	0	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	5	94772583	94772583	G	A	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.866	p.R289H	0.914	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	32	0	0	27	7	20.59	-	-	-	A	94772583	G	A	94772583	3	1	395	1	0	0	0	0	1	0	0	0	5674	1087	38	1	892	1	FAM81B	5	94772583	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		94772583	86142677	8	40223										
HLA-B	0	genome.wustl.edu	37	chr6	31324830	31324830	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggtcccctcgctcctcccgGcagaggccatttccctcccg	9	21	0	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	6	31324830	31324830	G	A	SNP	HLA-B	ENST00000434333	human	ensembl	69_37n	-1	putative	missense	c.11	p.A4V	0.020	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_stop_codon	HLA-B	HGNC	ENSG00000234745	10	0	0	2	6	75	-	-	-	A	31324830	G	A	31324830	3	1	395	1	0	0	0	0	1	0	0	0	7247	1218	42	4		4	HLA-B	6	31324830	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		31324830	139790237	9	40224										
DMRT3	0	genome.wustl.edu	37	chr9	990838	990838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccccagtaactctaccagcGtcttcagaagctcgcccgtc	7	17	3	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	9	990838	990838	G	A	SNP	DMRT3	ENST00000190165	human	ensembl	69_37n	1	known	missense	c.1252	p.V418I	0.998	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218	27	0	0	7	7	50	-	-	-	A	990838	G	A	990838	3	1	395	1	0	0	0	0	1	0	0	0	4623	1145	40	1	1258	1	DMRT3	9	990838	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		990838	140222593	10	40225										
SEMA4D	0	genome.wustl.edu	37	chr9	92003919	92003919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tgagtcgggctttcaggaagGaggtccatttcttctgcaag	13	8	3	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	9	92003919	92003919	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	missense	c.818	p.S273F	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	44	0	0	15	6	28.57	-	-	-	A	92003919	G	A	92003919	3	1	395	1	0	0	0	0	1	0	0	0	14122	1174	41	2	2368	2	SEMA4D	9	92003919	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09	91013081	92003919	49209512	11	40226										
ZDHHC6	0	genome.wustl.edu	37	chr10	114192251	114192251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagagggcagcaggcaccaCtataatcttctattacttta	7	10	3	1			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	10	114192251	114192251	C	T	SNP	ZDHHC6	ENST00000369405	human	ensembl	69_37n	-1	known	missense	c.974	p.S325N	1.000	pfam_SH3_2	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041	76	0	0	27	19	41.3	-	-	-	T	114192251	C	T	114192251	3	4	395	1	0	0	0	0	1	0	0	0	17715	565	20	4	279	4	ZDHHC6	10	114192251	Missense_Mutation	SNP	C	TCGA-AR-A24P-01A-11D-A167-09		114192251	21342496	12	40227										
ZC3H14	0	genome.wustl.edu	37	chr14	89039040	89039040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aaccagatgatctcattgacGaagacctcaactttgtgcag	8	10	2	4			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	14	89039040	89039040	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	69_37n	1	known	missense	c.550	p.E184K	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	57	0	0	33	9	21.43	-	-	-	A	89039040	G	A	89039040	3	1	395	1	0	0	0	0	1	0	0	0	17662	1059	37	1	572	1	ZC3H14	14	89039040	Missense_Mutation	SNP	G	TCGA-AR-A24P-01A-11D-A167-09		89039040	18310500	13	40228										
CBFB	0	genome.wustl.edu	37	chr16	67070577	67070578	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	gaaccaatctgtctctccagINSttttttccggccagctggca							TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	16	67070577	67070578	-	T	INS	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_ins	c.201_202	p.P69fs	1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	61	0	0	20	12	37.5	-	-	-	T	67070578	-	T	67070577	7	5	395	1	0	1	1	0	0	0	0	0	2724	1020	36	0	211	0	CBFB	16	67070577	Frame_Shift_Ins	INS	-	TCGA-AR-A24P-01A-11D-A167-09		67070577	23284176	14	40229										
TP53	0	genome.wustl.edu	37	chr17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aactgttacacatgtagttgTagtggatggtggtacagtca	12	5	1	0			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	17	7577580	7577580	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.701	p.Y234C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0	14	10	41.67	-	-	-	C	7577580	T	C	7577580	3	2	395	1	0	0	0	0	1	0	0	0	16477	1638	57	5	589	5	TP53	17	7577580	Missense_Mutation	SNP	T	TCGA-AR-A24P-01A-11D-A167-09		7577580	73617630	15	40230										
MYO18B	0	genome.wustl.edu	37	chr22	26165033	26165033	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	agcttcggagcacgactgggAaggcaggtgagtcctgggat							TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	22	26165033	26165033	A	-	DEL	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	frame_shift_del	c.1150	p.K384fs	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	36	0	0	7	2	22.22	-	-	-	-	26165033	A	-	26165033	7	5	395	1	0	1	0	1	0	0	0	0	10138	247	9	0	1160	0	MYO18B	22	26165033	Frame_Shift_Del	DEL	A	TCGA-AR-A24P-01A-11D-A167-09		26165033	25139533	16	40231										
CXCR3	0	genome.wustl.edu	37	chrX	70836775	70836775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagatgaagtctgggagggCgaaaagcaggcagagccccc	16	9	1	3			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	X	70836775	70836775	C	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.688	p.A230T	0.930	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	40	0	0	10	10	45.45	-	-	-	T	70836775	C	T	70836775	3	4	395	1	0	0	0	0	1	0	0	0	4123	768	27	1	563	1	CXCR3	23	70836775	Missense_Mutation	SNP	C	TCGA-AR-A24P-01A-11D-A167-09		70836775	84433785	17	40232										
UBE4B	0	genome.wustl.edu	37	chr1	10177641	10177642	+	Frame_Shift_Ins	INS	-	-	A													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cgaccgagttggaatagaggINSaaaaaaaagcaccaaaggta							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	10177641	10177642	-	A	INS	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	frame_shift_ins	c.1321_1322	p.A444fs	1.000:1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	48	0	0	24	3	11.11	-	-	-	A	10177642	-	A	10177641	7	5	396	1	0	1	1	0	0	0	0	0	16980	1175	41	0	1351	0	UBE4B	1	10177641	Frame_Shift_Ins	INS	-	TCGA-AR-A24Q-01A-12D-A167-09		10177641	239072980	1	40233										
PRAMEF1	0	genome.wustl.edu	37	chr1	12855745	12855745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cagtcttgaacccctcggagCtctgctggagaaaattgctg	11	11	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	12855745	12855745	C	G	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	missense	c.1025	p.A342G	0.001	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	167	0	0	65	37	36.27	-	-	-	G	12855745	C	G	12855745	3	3	396	1	0	0	0	0	1	0	0	0	12502	797	28	4	1035	4	PRAMEF1	1	12855745	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	2678104	12855745	236394876	2	40234										
DNAJC16	0	genome.wustl.edu	37	chr1	15892576	15892576	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	actccttttttcttactttaGcgactctaatgatgagcgag	7	9	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	15892576	15892576	G	T	SNP	DNAJC16	ENST00000375847	human	ensembl	69_37n	1	known	splice_site	c.1680-1	e12-1	1.000	-	-	-	no_errors	DNAJC16	HGNC	ENSG00000116138	87	0	0	33	13	28.26	-	-	-	T	15892576	G	T	15892576	5	4	396	1	0	0	0	0	0	0	1	0	4670	985	34	4	1725	4	DNAJC16	1	15892576	Splice_Site	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	3036831	15892576	233358045	3	40235										
EPHB2	0	genome.wustl.edu	37	chr1	23237037	23237037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agatgatccgcaatcccaacAgcctcaaagccatggcgccc	8	16	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	23237037	23237037	A	G	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	missense	c.2665	p.S889G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	30	0	0	10	11	52.38	-	-	-	G	23237037	A	G	23237037	3	3	396	1	0	0	0	0	1	0	0	0	5212	188	7	5	2722	5	EPHB2	1	23237037	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	7344461	23237037	226013584	4	40236										
KLF17	0	genome.wustl.edu	37	chr1	44595381	44595381	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	attccaagggtagccaggccCttcggtgggaatctaaggat	13	9	1	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	44595381	44595381	C	G	SNP	KLF17	ENST00000372299	human	ensembl	69_37n	1	known	silent	c.438	p.P146	0.007	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF17	HGNC	ENSG00000171872	21	0	0	12	9	42.86	-	-	-	G	44595381	C	G	44595381	2	3	396	1	0	0	0	0	0	0	0	1	8398	668	24	4		4	KLF17	1	44595381	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	21358344	44595381	204655240	5	40237										
LRP8	0	genome.wustl.edu	37	chr1	53723024	53723024	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtcaggcttggtgtctctgtGctgtggttctggtaggtgga	17	6	3	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	53723024	53723024	G	C	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.2322	p.S774R	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	267	0	0	254	93	26.8	-	-	-	C	53723024	G	C	53723024	3	2	396	1	0	0	0	0	1	0	0	0	9029	1310	46	4	589	4	LRP8	1	53723024	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	9127643	53723024	195527597	6	40238										
SLC44A5	0	genome.wustl.edu	37	chr1	75693410	75693410	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	accagtttttaaaatactcaCtaaatgtgaaccatgtttgt	5	7	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	75693410	75693410	C	T	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	splice_site	c.985+1	e12+1	1.000	-	-	-	no_errors	SLC44A5	HGNC	ENSG00000137968	80	0	0	23	34	59.65	-	-	-	T	75693410	C	T	75693410	5	4	396	1	0	0	0	0	0	0	1	0	14728	579	20	4	1332	4	SLC44A5	1	75693410	Splice_Site	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	21970386	75693410	173557211	7	40239										
BARHL2	0	genome.wustl.edu	37	chr1	91180220	91180220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gttgattgagctggtggtcgGaaaaagctgtccttgctttt	13	6	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	91180220	91180220	G	T	SNP	BARHL2	ENST00000370445	human	ensembl	69_37n	-1	known	missense	c.719	p.S240Y	0.998	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032	90	0	0	28	36	56.25	-	-	-	T	91180220	G	T	91180220	3	4	396	1	0	0	0	0	1	0	0	0	1318	1174	41	2	452	2	BARHL2	1	91180220	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	15486810	91180220	158070401	8	40240										
FLG	0	genome.wustl.edu	37	chr1	152279942	152279942	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttgctcgtagtgggatccctGccttcctccactgcttgacc	9	15	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	152279942	152279942	G	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7420	p.Q2474E	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	175	0	0	122	38	23.75	-	-	-	C	152279942	G	C	152279942	3	2	396	1	0	0	0	0	1	0	0	0	5968	1328	46	4	4769	4	FLG	1	152279942	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	61099722	152279942	96970679	9	40241										
SPTA1	0	genome.wustl.edu	37	chr1	158612286	158612286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cgccatgcacctgctcagatCggccatcgacttcatgtgca	9	15	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	158612286	158612286	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.4652	p.R1551Q	0.796	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	70	0	0	44	10	18.52	-	-	-	T	158612286	C	T	158612286	3	4	396	1	0	0	0	0	1	0	0	0	15207	884	31	1	2687	1	SPTA1	1	158612286	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	6332344	158612286	90638335	10	40242										
LY9	0	genome.wustl.edu	37	chr1	160769623	160769623	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ccgtgactctccccctaaacAtctcagtagacacagagatt	6	14	2	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	160769623	160769623	A	C	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.205	p.I69L	0.004	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	42	0	0	31	13	29.55	-	-	-	C	160769623	A	C	160769623	3	2	396	1	0	0	0	0	1	0	0	0	9168	217	8	5	211	5	LY9	1	160769623	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	2157337	160769623	88480998	11	40243										
C1orf112	0	genome.wustl.edu	37	chr1	169798585	169798585	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttcatccctcactgtttgctGaactggtaagcatattactt	6	10	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	169798585	169798585	G	A	SNP	C1orf112	ENST00000286031	human	ensembl	69_37n	1	known	missense	c.1309	p.E437K	1.000	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	132	1	0.75	97	21	17.8	-	-	-	A	169798585	G	A	169798585	3	1	396	1	0	0	0	0	1	0	0	0	2004	1291	45	2	1351	2	C1orf112	1	169798585	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	9028962	169798585	79452036	12	40244										
PAPPA2	0	genome.wustl.edu	37	chr1	176769269	176769269	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	actgcatccagtcatgtgagGtaagatagcctccccttccc	8	14	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	176769269	176769269	G	C	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	splice_site	c.5202+1	e20+1	1.000	-	-	-	no_errors	PAPPA2	HGNC	ENSG00000116183	66	0	0	36	24	40	-	-	-	C	176769269	G	C	176769269	5	2	396	1	0	0	0	0	0	0	1	0	11506	1275	44	4	5334	4	PAPPA2	1	176769269	Splice_Site	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	6970684	176769269	72481352	13	40245										
RGS1	0	genome.wustl.edu	37	chr1	192545958	192545958	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tctctggaaaaacttcttgcCaaccaaagtaagtataacta	5	9	2	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	192545958	192545958	C	G	SNP	RGS1	ENST00000367459	human	ensembl	69_37n	1	known	silent	c.273	p.A91	0.322	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS1	HGNC	ENSG00000090104	87	0	0	92	21	18.58	-	-	-	G	192545958	C	G	192545958	2	3	396	1	0	0	0	0	0	0	0	1	13376	581	21	4		4	RGS1	1	192545958	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	15776689	192545958	56704663	14	40246										
CFH	0	genome.wustl.edu	37	chr1	196684806	196684806	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgaatgacacattggactatGaatgccatgatggttatgaa	10	5	0	5			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	196684806	196684806	G	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	nonsense	c.1603	p.E535*	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	140	0	0	72	49	40.5	-	-	-	T	196684806	G	T	196684806	4	4	396	1	0	0	0	0	0	1	0	0	3312	1291	45	2	1663	2	CFH	1	196684806	Nonsense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	4138848	196684806	52565815	15	40247										
KCNH1	0	genome.wustl.edu	37	chr1	210856854	210856854	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgctcagggatggggtagaaCgaatgcttgacctctgccag	14	9	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	210856854	210856854	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	silent	c.2739	p.S913	0.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	42	0	0	18	8	30.77	-	-	-	T	210856854	C	T	210856854	2	4	396	1	0	0	0	0	0	0	0	1	8085	523	19	1		1	KCNH1	1	210856854	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	14172048	210856854	38393767	16	40248										
DUSP10	0	genome.wustl.edu	37	chr1	221912294	221912294	+	Frame_Shift_Del	DEL	C	C	-													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acctttcaacaccagaggttCtttgccttctctcttcaggg							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	221912294	221912294	C	-	DEL	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	frame_shift_del	c.793	p.E265fs	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	94	0	0	98	13	11.5	-	-	-	-	221912294	C	-	221912294	7	5	396	1	0	1	0	1	0	0	0	0	4845	922	32	0	667	0	DUSP10	1	221912294	Frame_Shift_Del	DEL	C	TCGA-AR-A24Q-01A-12D-A167-09	11055440	221912294	27338327	17	40249										
WDR64	0	genome.wustl.edu	37	chr1	241959652	241959652	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttacaggaaagaagaagggaGgtcatgttcaacgtgaaaaa	12	4	2	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	241959652	241959652	G	T	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	missense	c.3142	p.G1048C	0.200	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	57	0	0	65	27	29.35	-	-	-	T	241959652	G	T	241959652	3	4	396	1	0	0	0	0	1	0	0	0	17412	1000	35	4	3244	4	WDR64	1	241959652	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	20047358	241959652	7290969	18	40250										
AHCTF1	0	genome.wustl.edu	37	chr1	247024360	247024360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttcaaggtcttccggtgacgGtgcatcctgatactctaagg	11	10	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	247024360	247024360	G	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.4000	p.P1334A	0.104	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	100	0	0	92	20	17.86	-	-	-	C	247024360	G	C	247024360	3	2	396	1	0	0	0	0	1	0	0	0	408	1261	44	4	2859	4	AHCTF1	1	247024360	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	5064708	247024360	2226261	19	40251										
TIA1	0	genome.wustl.edu	37	chr2	70442526	70442526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttgcacgggatttatcatatCaagagtttctttgccccaat	7	9	3	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	70442526	70442526	C	G	SNP	TIA1	ENST00000433529	human	ensembl	69_37n	-1	known	missense	c.865	p.D289H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	66	0	0	99	23	18.85	-	-	-	G	70442526	C	G	70442526	3	3	396	1	0	0	0	0	1	0	0	0	15982	826	29	2	307	2	TIA1	2	70442526	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		70442526	172756847	20	40252										
DQX1	0	genome.wustl.edu	37	chr2	74750598	74750598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtgaaggggcagtactcgtgGtggaagcccttggagaagca	17	7	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	74750598	74750598	G	T	SNP	DQX1	ENST00000393951	human	ensembl	69_37n	-1	known	missense	c.883	p.P295T	0.012	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	33	0	0	20	25	55.56	-	-	-	T	74750598	G	T	74750598	3	4	396	1	0	0	0	0	1	0	0	0	4786	1261	44	4	1302	4	DQX1	2	74750598	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	4308072	74750598	168448775	21	40253										
NCAPH	0	genome.wustl.edu	37	chr2	97025913	97025913	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cccaatcagaaaacaaaaagAagagtacaaaaaaagatttt	5	6	1	4			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	97025913	97025913	A	G	SNP	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	missense	c.1390	p.K464E	1.000	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	49	0	0	75	13	14.77	-	-	-	G	97025913	A	G	97025913	3	3	396	1	0	0	0	0	1	0	0	0	10281	247	9	5	1432	5	NCAPH	2	97025913	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	22275315	97025913	146173460	22	40254										
MFSD9	0	genome.wustl.edu	37	chr2	103335116	103335116	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cccacagtcagctggaggtcCgtgatgcacgtcctgccaat	11	14	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	103335116	103335116	C	A	SNP	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	silent	c.1188	p.T396	0.010	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	25	0	0	16	8	33.33	-	-	-	A	103335116	C	A	103335116	2	1	396	1	0	0	0	0	0	0	0	1	9610	639	23	3		3	MFSD9	2	103335116	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	6309203	103335116	139864257	23	40255										
PTPN4	0	genome.wustl.edu	37	chr2	120640129	120640129	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acttgtcaggctacctctcaGattattctttcattcctaat	4	11	4	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	120640129	120640129	G	A	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.517	p.D173N	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	36	0	0	21	21	50	-	-	-	A	120640129	G	A	120640129	3	1	396	1	0	0	0	0	1	0	0	0	12873	942	33	2	543	2	PTPN4	2	120640129	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	17305013	120640129	122559244	24	40256										
SCN2A	0	genome.wustl.edu	37	chr2	166201118	166201118	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	actctaaatatgctaattaaGatcattggcaattctgtggg	8	6	3	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	166201118	166201118	G	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.2616	p.K872N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	70	0	0	53	11	17.19	-	-	-	C	166201118	G	C	166201118	3	2	396	1	0	0	0	0	1	0	0	0	14004	933	33	2	2770	2	SCN2A	2	166201118	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	45560989	166201118	76998255	25	40257										
SCN7A	0	genome.wustl.edu	37	chr2	167285716	167285716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gatctttcacctccatagaaCatttcttcttcttcagagat	4	11	6	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	167285716	167285716	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.2661	p.M887I	0.145	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	69	0	0	77	23	23	-	-	-	T	167285716	C	T	167285716	3	4	396	1	0	0	0	0	1	0	0	0	14011	478	17	4	2427	4	SCN7A	2	167285716	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	1084598	167285716	75913657	26	40258										
ORMDL1	0	genome.wustl.edu	37	chr2	190647150	190647150	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ataatgtgaaattcttaccaGattatgtataatatttgtta	5	3	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	190647150	190647150	G	C	SNP	ORMDL1	ENST00000325795	human	ensembl	69_37n	-1	known	missense	c.172	p.L58V	0.999	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL1	HGNC	ENSG00000128699	34	0	0	50	6	10.71	-	-	-	C	190647150	G	C	190647150	3	2	396	1	0	0	0	0	1	0	0	0	11342	933	33	2	301	2	ORMDL1	2	190647150	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	23361434	190647150	52552223	27	40259										
DNAH7	0	genome.wustl.edu	37	chr2	196837175	196837175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aatcatatcagttacctccaCtttctgaatgtaagcctgag	6	10	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	196837175	196837175	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.1849	p.V617M	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	82	0	0	90	18	16.67	-	-	-	T	196837175	C	T	196837175	3	4	396	1	0	0	0	0	1	0	0	0	4641	565	20	4	10425	4	DNAH7	2	196837175	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	6190025	196837175	46362198	28	40260										
CASP8	0	genome.wustl.edu	37	chr2	202149565	202149565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgaccacgacctttgaagagCttcattttgagatcaagccc	8	11	2	4			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	202149565	202149565	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.1006	p.L336F	0.994	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	32	0	0	34	27	44.26	-	-	-	T	202149565	C	T	202149565	3	4	396	1	0	0	0	0	1	0	0	0	2702	797	28	4	1136	4	CASP8	2	202149565	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	5312390	202149565	41049808	29	40261										
PLCD4	0	genome.wustl.edu	37	chr2	219496970	219496970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aagagtcagaattggcgctgGagtcccagtttgagactgag	14	7	1	4			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	219496970	219496970	G	A	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	missense	c.1384	p.E462K	0.002	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	48	0	0	31	4	11.43	-	-	-	A	219496970	G	A	219496970	3	1	396	1	0	0	0	0	1	0	0	0	12107	1175	41	2	1418	2	PLCD4	2	219496970	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	17347405	219496970	23702403	30	40262										
CXCR7	0	genome.wustl.edu	37	chr2	237489606	237489606	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtacgccgtgtcgtctgcatCctggtgtggctgctggcctt	14	12	1	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	237489606	237489606	C	T	SNP	CXCR7	ENST00000272928	human	ensembl	69_37n	1	known	silent	c.498	p.I166	0.053	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_RDC1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Frt_met_rcpt	-	no_errors	CXCR7	HGNC	ENSG00000144476	51	0	0	33	9	21.43	-	-	-	T	237489606	C	T	237489606	2	4	396	1	0	0	0	0	0	0	0	1	4127	845	30	2		2	CXCR7	2	237489606	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	17992636	237489606	5709767	31	40263										
FBLN2	0	genome.wustl.edu	37	chr3	13669464	13669464	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcaggatcctgaaggcaactGtgtgggtgagcgggggctgc	19	8	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	13669464	13669464	G	C	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	missense	c.2564	p.C855S	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	35	0	0	32	4	11.11	-	-	-	C	13669464	G	C	13669464	3	2	396	1	0	0	0	0	1	0	0	0	5745	1377	48	4	1292	4	FBLN2	3	13669464	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		13669464	184352966	32	40264										
BTD	0	genome.wustl.edu	37	chr3	15677076	15677076	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	attatgtggctgccgtgtatGagcatccatccatcctgagt	10	10	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	15677076	15677076	G	A	SNP	BTD	ENST00000303498	human	ensembl	69_37n	1	known	missense	c.190	p.E64K	1.000	superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814	53	0	0	67	14	17.07	-	-	-	A	15677076	G	A	15677076	3	1	396	1	0	0	0	0	1	0	0	0	1559	1291	45	2	196	2	BTD	3	15677076	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	2007612	15677076	182345354	33	40265										
EPHA3	0	genome.wustl.edu	37	chr3	89390198	89390198	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttacttccgggcagacaaagAccctccatccatggcttgta	8	13	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	89390198	89390198	A	T	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.947	p.D316V	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	68	0	0	54	13	19.4	-	-	-	T	89390198	A	T	89390198	3	4	396	1	0	0	0	0	1	0	0	0	5205	275	10	5	961	5	EPHA3	3	89390198	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	73713122	89390198	108632232	34	40266										
COL6A5	0	genome.wustl.edu	37	chr3	130110337	130110337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tacagaggaacatggcagccGcatcaagcaaaatgtgaagc	11	9	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	130110337	130110337	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.2732	p.R911H	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	35	0	0	31	9	22.5	-	-	-	A	130110337	G	A	130110337	3	1	396	1	0	0	0	0	1	0	0	0	3732	1087	38	1	2754	1	COL6A5	3	130110337	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	40720139	130110337	67912093	35	40267										
ATP2C1	0	genome.wustl.edu	37	chr3	130686035	130686035	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tggggaagtgattgttgatgGtgatgttgttcatggattct	15	2	2	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	130686035	130686035	G	C	SNP	ATP2C1	ENST00000393221	human	ensembl	69_37n	1	known	missense	c.1271	p.G424A	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C1	HGNC	ENSG00000017260	126	0	0	97	40	29.2	-	-	-	C	130686035	G	C	130686035	3	2	396	1	0	0	0	0	1	0	0	0	1147	1261	44	4	1223	4	ATP2C1	3	130686035	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	575698	130686035	67336395	36	40268										
MED12L	0	genome.wustl.edu	37	chr3	150840683	150840683	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gataattattggctggttacTgctcgatcccagagtgcaat	10	8	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	150840683	150840683	T	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.318	p.T106	0.951	pfam_Mediator_Med12	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	100	0	0	99	20	16.67	-	-	-	A	150840683	T	A	150840683	2	1	396	1	0	0	0	0	0	0	0	1	9500	1567	55	5		5	MED12L	3	150840683	Silent	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	20154648	150840683	47181747	37	40269										
ZBBX	0	genome.wustl.edu	37	chr3	167000239	167000239	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggagctttctttaacagagtTggaaagtggaaaatttgctg	12	4	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	167000239	167000239	T	C	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.2041	p.N681D	0.018	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	49	0	0	63	11	14.86	-	-	-	C	167000239	T	C	167000239	3	2	396	1	0	0	0	0	1	0	0	0	17613	1812	63	5	490	5	ZBBX	3	167000239	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	16159556	167000239	31022191	38	40270										
NDUFB5	0	genome.wustl.edu	37	chr3	179341750	179341750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aaattgatgcatgtgagaggAgatggaccctggtattacta	12	5	0	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	179341750	179341750	A	G	SNP	NDUFB5	ENST00000471112	human	ensembl	69_37n	1	putative	missense	c.148	p.R50G	0.346	NULL	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_start_codon	NDUFB5	HGNC	ENSG00000136521	98	0	0	85	19	18.27	-	-	-	G	179341750	A	G	179341750	3	3	396	1	0	0	0	0	1	0	0	0	10356	291	11	5	514	5	NDUFB5	3	179341750	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	12341511	179341750	18680680	39	40271										
C4orf50	0	genome.wustl.edu	37	chr4	5961272	5961274	+	In_Frame_Del	DEL	GTT	GTT	-													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tccgcctttttcttgcagacGttgtgcggggagacctggtt							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	5961272	5961274	GTT	-	DEL	C4orf50	ENST00000531445	human	ensembl	69_37n	-1	known	in_frame_del	c.2083_2081	p.Q694in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	68	0	0	21	16	43.24	-	-	-	-	5961274	GTT	-	5961272	7	5	396	1	0	1	0	1	0	0	0	0	2297	1145	40	0	173	0	C4orf50	4	5961272	In_Frame_Del	DEL	GTT	TCGA-AR-A24Q-01A-12D-A167-09		5961272	185193004	40	40272										
KIAA1211	0	genome.wustl.edu	37	chr4	57182104	57182104	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cctccgcagaaagtggtggcCcacacagagttcacgacctc	10	15	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	57182104	57182104	C	A	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	silent	c.2436	p.A812	0.118	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	31	0	0	10	19	65.52	-	-	-	A	57182104	C	A	57182104	2	1	396	1	0	0	0	0	0	0	0	1	8267	610	22	4		4	KIAA1211	4	57182104	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	51220832	57182104	133972172	41	40273										
AREG	0	genome.wustl.edu	37	chr4	75311103	75311103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gccggcgccggtggtgctgtCgctcttgatactcggctcag	15	13	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	75311103	75311103	C	G	SNP	AREG	ENST00000264487	human	ensembl	69_37n	1	known	missense	c.41	p.S14W	0.223	NULL	pfscan_EG-like_dom	-	no_errors	AREG	HGNC	ENSG00000109321	53	0	0	7	8	53.33	-	-	-	G	75311103	C	G	75311103	3	3	396	1	0	0	0	0	1	0	0	0	845	893	31	3	43	3	AREG	4	75311103	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	18128999	75311103	115843173	42	40274										
MAPK10	0	genome.wustl.edu	37	chr4	87022223	87022223	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	accgttctccttgtagcccaTccccaggatgacctcagggg	10	15	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	87022223	87022223	T	A	SNP	MAPK10	ENST00000359221	human	ensembl	69_37n	-1	known	missense	c.712	p.M238L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK10	HGNC	ENSG00000109339	54	0	0	21	20	48.78	-	-	-	A	87022223	T	A	87022223	3	1	396	1	0	0	0	0	1	0	0	0	9343	1435	50	5	715	5	MAPK10	4	87022223	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	11711120	87022223	104132053	43	40275										
RAPGEF2	0	genome.wustl.edu	37	chr4	160252682	160252682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aagaatttgaaaacaatctgGaaagagaggtaatatttgtg	10	2	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	160252682	160252682	G	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	nonsense	c.1084	p.E362*	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	52	0	0	42	10	19.23	-	-	-	T	160252682	G	T	160252682	4	4	396	1	0	0	0	0	0	1	0	0	13127	1175	41	2	1114	2	RAPGEF2	4	160252682	Nonsense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	73230459	160252682	30901594	44	40276										
C5orf34	0	genome.wustl.edu	37	chr5	43505873	43505873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgtaggtgtgggactggacaGctgagtgacagggccctggg	19	7	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	43505873	43505873	G	A	SNP	C5orf34	ENST00000503655	human	ensembl	69_37n	-1	known	missense	c.152	p.A51V	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C5orf34	HGNC	ENSG00000172244	43	0	0	18	18	50	-	-	-	A	43505873	G	A	43505873	3	1	396	1	0	0	0	0	1	0	0	0	2314	962	34	4	1047	4	C5orf34	5	43505873	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		43505873	137409387	45	40277										
FST	0	genome.wustl.edu	37	chr5	52779551	52779551	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cagtaccaaggcagatgtaaAagtaggtcctaccctgttga	10	9	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	52779551	52779551	A	C	SNP	FST	ENST00000256759	human	ensembl	69_37n	1	known	missense	c.495	p.K165N	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	FST	HGNC	ENSG00000134363	17	0	0	15	4	21.05	-	-	-	C	52779551	A	C	52779551	3	2	396	1	0	0	0	0	1	0	0	0	6125	28	1	5	505	5	FST	5	52779551	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	9273678	52779551	128135709	46	40278										
ELL2	0	genome.wustl.edu	37	chr5	95234001	95234001	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aatttcctcttctctcttaaGatcttcctccttttcctcaa	1	14	5	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	95234001	95234001	G	T	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.1468	p.L490I	0.999	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	82	0	0	58	21	26.58	-	-	-	T	95234001	G	T	95234001	3	4	396	1	0	0	0	0	1	0	0	0	5100	942	33	2	474	2	ELL2	5	95234001	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	42454450	95234001	85681259	47	40279										
RUNX2	0	genome.wustl.edu	37	chr6	45514594	45514594	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	actgggccctttttcagaccCcaggcagttcccaagcattt	8	14	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	45514594	45514594	C	G	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	missense	c.1322	p.P441R	1.000	NULL	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	73	0	0	57	40	41.24	-	-	-	G	45514594	C	G	45514594	3	3	396	1	0	0	0	0	1	0	0	0	13834	623	22	4	1164	4	RUNX2	6	45514594	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		45514594	125600473	48	40280										
TDRD6	0	genome.wustl.edu	37	chr6	46657757	46657757	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gctccacaaagaattagtcaTccatattcttgataaacagg	6	9	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	46657757	46657757	T	G	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.1892	p.I631S	0.980	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	37	0	0	30	23	43.4	-	-	-	G	46657757	T	G	46657757	3	3	396	1	0	0	0	0	1	0	0	0	15829	1435	50	5	1894	5	TDRD6	6	46657757	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	1143163	46657757	124457310	49	40281										
MRAP2	0	genome.wustl.edu	37	chr6	84798939	84798939	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aggtctctctttcactgctaCatcaatgaggtggaacgctt	9	10	4	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	84798939	84798939	C	T	SNP	MRAP2	ENST00000257776	human	ensembl	69_37n	1	known	silent	c.357	p.Y119	1.000	NULL	NULL	-	no_errors	MRAP2	HGNC	ENSG00000135324	68	0	0	53	7	11.67	-	-	-	T	84798939	C	T	84798939	2	4	396	1	0	0	0	0	0	0	0	1	9826	489	17	4		4	MRAP2	6	84798939	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	38141182	84798939	86316128	50	40282										
CASP8AP2	0	genome.wustl.edu	37	chr6	90566882	90566882	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aactgccagagtggaaataaAccgcaaggatgaagaaataa	10	6	0	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	90566882	90566882	A	C	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	59	0	0	38	22	36.67	-	-	-	C	90566882	A	C	90566882	1	2	396	0	1	0	0	0	0	0	0	0	2703	43	2	5		5	CASP8AP2	6	90566882	RNA	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	5767943	90566882	80548185	51	40283										
GPRC6A	0	genome.wustl.edu	37	chr6	117130674	117130674	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgtgacttctgtacaagtgtCatagatttcataccccagtt	7	9	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	117130674	117130674	C	G	SNP	GPRC6A	ENST00000310357	human	ensembl	69_37n	-1	known	missense	c.301	p.D101H	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	86	0	0	81	18	18.18	-	-	-	G	117130674	C	G	117130674	3	3	396	1	0	0	0	0	1	0	0	0	6779	826	29	2	2499	2	GPRC6A	6	117130674	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	26563792	117130674	53984393	52	40284										
SYNE1	0	genome.wustl.edu	37	chr6	152527416	152527416	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggcggcctcagcgccactgtCcgccgagagaaggagttgct	15	13	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	152527416	152527416	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.22906	p.D7636H	0.999	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	86	0	0	42	26	38.24	-	-	-	G	152527416	C	G	152527416	3	3	396	1	0	0	0	0	1	0	0	0	15537	855	30	2	3644	2	SYNE1	6	152527416	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	35396742	152527416	18587651	53	40285										
OSBPL3	0	genome.wustl.edu	37	chr7	24843951	24843951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aacctgaaaaaccgaggctgGtgctccacatgattttcttc	8	11	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	24843951	24843951	G	C	SNP	OSBPL3	ENST00000313367	human	ensembl	69_37n	-1	known	missense	c.2550	p.H850Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	132	0	0	85	16	15.84	-	-	-	C	24843951	G	C	24843951	3	2	396	1	0	0	0	0	1	0	0	0	11352	1252	44	4	121	4	OSBPL3	7	24843951	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		24843951	134294712	54	40286										
HIP1	0	genome.wustl.edu	37	chr7	75192287	75192287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcatccttctctaggactggCtcgctgtcgggggatgaggc	14	11	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	75192287	75192287	C	T	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	silent	c.972	p.E324	1.000	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	58	0	0	33	15	31.25	-	-	-	T	75192287	C	T	75192287	2	4	396	1	0	0	0	0	0	0	0	1	7165	796	28	4		4	HIP1	7	75192287	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	50348336	75192287	83946376	55	40287										
SRRT	0	genome.wustl.edu	37	chr7	100484569	100484569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cggcagagatcaacgtggagCgggatgagaagttgattaag	16	5	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	100484569	100484569	C	T	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.1798	p.R600W	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	70	0	0	47	10	17.24	-	-	-	T	100484569	C	T	100484569	3	4	396	1	0	0	0	0	1	0	0	0	15263	759	27	1	1851	1	SRRT	7	100484569	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	25292282	100484569	58654094	56	40288										
RELN	0	genome.wustl.edu	37	chr7	103197424	103197424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gagaacacatgcatttttacCgttattataaggttgccaga	8	7	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	103197424	103197424	C	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.5797	p.G1933C	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	126	0	0	123	48	28.07	-	-	-	A	103197424	C	A	103197424	3	1	396	1	0	0	0	0	1	0	0	0	13303	666	23	3	4697	3	RELN	7	103197424	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	2712855	103197424	55941239	57	40289										
SPAM1	0	genome.wustl.edu	37	chr7	123594195	123594195	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ccactgagaaagcaaaacaaGaatttgaaaaggcagggaag	11	6	0	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	123594195	123594195	G	A	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	missense	c.571	p.E191K	0.054	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	53	0	0	30	26	46.43	-	-	-	A	123594195	G	A	123594195	3	1	396	1	0	0	0	0	1	0	0	0	15077	943	33	2	573	2	SPAM1	7	123594195	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	20396771	123594195	35544468	58	40290										
ABCB8	0	genome.wustl.edu	37	chr7	150739114	150739114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggaagctggaagcttccgatGaagaggtgtacacagccgcc	14	10	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	150739114	150739114	G	A	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	missense	c.1735	p.E579K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	38	0	0	18	5	21.74	-	-	-	A	150739114	G	A	150739114	3	1	396	1	0	0	0	0	1	0	0	0	47	1291	45	2	1738	2	ABCB8	7	150739114	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	27144919	150739114	8399549	59	40291										
PAXIP1	0	genome.wustl.edu	37	chr7	154754122	154754122	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ttttcttcttctttaagactGtgtttaaccagtgtgcagta	7	7	3	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	154754122	154754122	G	C	SNP	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	missense	c.2036	p.T679R	0.247	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	147	0	0	62	36	36.73	-	-	-	C	154754122	G	C	154754122	3	2	396	1	0	0	0	0	1	0	0	0	11560	1377	48	4	1221	4	PAXIP1	7	154754122	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	4015008	154754122	4384541	60	40292										
DLGAP2	0	genome.wustl.edu	37	chr8	1581131	1581131	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acagctaccttcgagccattCaagccggctactcccaagat	7	15	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	1581131	1581131	C	A	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	1	known	missense	c.1489	p.Q497K	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	91	0	0	31	6	16.22	-	-	-	A	1581131	C	A	1581131	3	1	396	1	0	0	0	0	1	0	0	0	4596	827	29	2	1503	2	DLGAP2	8	1581131	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		1581131	144782891	61	40293										
CSMD1	0	genome.wustl.edu	37	chr8	2813173	2813173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tacatgttctgtgctcagatCcccctgcgaggaaaaagcct	9	12	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	2813173	2813173	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9935	p.G3312E	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	85	0	0	37	29	43.94	-	-	-	T	2813173	C	T	2813173	3	4	396	1	0	0	0	0	1	0	0	0	3976	855	30	2	790	2	CSMD1	8	2813173	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	1232042	2813173	143550849	62	40294										
DOK2	0	genome.wustl.edu	37	chr8	21767238	21767238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aggcggcggcagtgagtcatGcggccgagagtaggggctat	19	8	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	21767238	21767238	G	A	SNP	DOK2	ENST00000276420	human	ensembl	69_37n	-1	known	missense	c.823	p.H275Y	0.998	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443	52	0	0	37	10	21.28	-	-	-	A	21767238	G	A	21767238	3	1	396	1	0	0	0	0	1	0	0	0	4732	1319	46	4	419	4	DOK2	8	21767238	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	18954065	21767238	124596784	63	40295										
UNC5D	0	genome.wustl.edu	37	chr8	35606156	35606156	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	atcccgcactgtgcagatgtCagttctgagcattggaatat	10	9	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	35606156	35606156	C	G	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	silent	c.1878	p.V626	0.997	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	68	0	0	31	26	45.61	-	-	-	G	35606156	C	G	35606156	2	3	396	1	0	0	0	0	0	0	0	1	17092	813	29	2		2	UNC5D	8	35606156	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	13838918	35606156	110757866	64	40296										
ADAM9	0	genome.wustl.edu	37	chr8	38899492	38899492	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agaaactttagcagttgcagTgcagaggactttgagaagtt	12	5	0	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	38899492	38899492	T	A	SNP	ADAM9	ENST00000487273	human	ensembl	69_37n	1	known	missense	c.1158	p.S386R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM9	HGNC	ENSG00000168615	54	0	0	43	6	12.24	-	-	-	A	38899492	T	A	38899492	3	1	396	1	0	0	0	0	1	0	0	0	253	1693	59	5	1204	5	ADAM9	8	38899492	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	3293336	38899492	107464530	65	40297										
GINS4	0	genome.wustl.edu	37	chr8	41397271	41397271	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gagccttccagcctctcgccGgaagagttggcctttgccag	12	14	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	41397271	41397271	G	T	SNP	GINS4	ENST00000276533	human	ensembl	69_37n	1	known	silent	c.372	p.P124	0.674	pfam_GINS_complex,pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536	47	0	0	28	12	30	-	-	-	T	41397271	G	T	41397271	2	4	396	1	0	0	0	0	0	0	0	1	6442	1103	39	3		3	GINS4	8	41397271	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	2497779	41397271	104966751	66	40298										
NOL6	0	genome.wustl.edu	37	chr9	33466362	33466362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cgagccggggcagcagtgagGaccgctcccgcagagtctca	15	14	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33466362	33466362	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.2153	p.S718F	0.010	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	45	0	0	32	10	23.81	-	-	-	A	33466362	G	A	33466362	3	1	396	1	0	0	0	0	1	0	0	0	10597	1174	41	2	1327	2	NOL6	9	33466362	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		33466362	107747069	67	40299			1	69		4	4	3186	G		4.514044e-07
NOL6	0	genome.wustl.edu	37	chr9	33467129	33467129	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cacagtgccaagaggtgggtGaccacctggtggggaataag	16	8	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33467129	33467129	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	silent	c.1857	p.V619	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	65	0	0	57	8	12.31	-	-	-	A	33467129	G	A	33467129	2	1	396	1	0	0	0	0	0	0	0	1	10597	1277	45	2		2	NOL6	9	33467129	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	767	33467129	107746302	68	40300			1	69		4	4	3186	G		4.514044e-07
NOL6	0	genome.wustl.edu	37	chr9	33467240	33467240	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agctccgagcgggatccccaGaactggcggaatttagcagc	13	12	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33467240	33467240	G	A	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	silent	c.1746	p.F582	0.997	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	37	0	0	31	8	20.51	-	-	-	A	33467240	G	A	33467240	2	1	396	1	0	0	0	0	0	0	0	1	10597	933	33	2		2	NOL6	9	33467240	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	111	33467240	107746191	69	40301			1	69		4	4	3186	G		4.514044e-07
NOL6	0	genome.wustl.edu	37	chr9	33469547	33469547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggtggcagccatttgtgtagGagaagcaaacactgccaaag	13	8	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33469547	33469547	G	C	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.677	p.S226C	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	94	0	0	52	10	16.13	-	-	-	C	33469547	G	C	33469547	3	2	396	1	0	0	0	0	1	0	0	0	10597	1174	41	2	2851	2	NOL6	9	33469547	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	2307	33469547	107743884	70	40302			1	69		4	4	3186	G		4.514044e-07
PRKACG	0	genome.wustl.edu	37	chr9	71628311	71628311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agaagggtgggaagcccacgGccatctcatagatgagcacc	13	11	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	71628311	71628311	G	T	SNP	PRKACG	ENST00000377276	human	ensembl	69_37n	-1	known	missense	c.698	p.A233D	0.954	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	40	0	0	32	14	30.43	-	-	-	T	71628311	G	T	71628311	3	4	396	1	0	0	0	0	1	0	0	0	12580	1203	42	4	361	4	PRKACG	9	71628311	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	38158764	71628311	69585120	71	40303										
PRUNE2	0	genome.wustl.edu	37	chr9	79324308	79324308	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aataattggtatctaaggggGaaggcaccgaatcttctcct	10	8	3	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79324308	79324308	G	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1805	p.S602Y	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	91	0	0	89	15	14.42	-	-	-	T	79324308	G	T	79324308	3	4	396	1	0	0	0	0	1	0	0	0	12721	1174	41	2	6432	2	PRUNE2	9	79324308	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	7695997	79324308	61889123	72	40304										
PRUNE2	0	genome.wustl.edu	37	chr9	79325223	79325223	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	caatttccaaaccaccccacCagctgctgcaccgtgcatgg	7	17	0	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79325223	79325223	C	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.890	p.W297L	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	70	0	0	56	45	44.55	-	-	-	A	79325223	C	A	79325223	3	1	396	1	0	0	0	0	1	0	0	0	12721	595	21	4	7347	4	PRUNE2	9	79325223	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	915	79325223	61888208	73	40305										
VPS13A	0	genome.wustl.edu	37	chr9	79834980	79834980	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agttacataacatagcaattGaatttaataaaccacaggtg	6	6	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79834980	79834980	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.865	p.E289Q	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	66	0	0	49	13	20.97	-	-	-	C	79834980	G	C	79834980	3	2	396	1	0	0	0	0	1	0	0	0	17286	1291	45	2	907	2	VPS13A	9	79834980	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	509757	79834980	61378451	74	40306										
OR13C9	0	genome.wustl.edu	37	chr9	107379682	107379682	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcatccaagtcatctgaattAagtgtctctttagacttggg	9	8	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	107379682	107379682	A	C	SNP	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	silent	c.804	p.L268	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	116	1	0.85	59	23	28.05	-	-	-	C	107379682	A	C	107379682	2	2	396	1	0	0	0	0	0	0	0	1	11012	349	13	5		5	OR13C9	9	107379682	Silent	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	27544702	107379682	33833749	75	40307										
ABCA1	0	genome.wustl.edu	37	chr9	107558476	107558476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acatgagaggtgtgattgacCacctgttgagacacaaaaag	11	7	0	4			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	107558476	107558476	C	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.5240	p.W1747L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	77	0	0	41	25	37.88	-	-	-	A	107558476	C	A	107558476	3	1	396	1	0	0	0	0	1	0	0	0	28	595	21	4	1593	4	ABCA1	9	107558476	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	178794	107558476	33654955	76	40308										
LMX1B	0	genome.wustl.edu	37	chr9	129455805	129455805	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cccctctctctgagccaggtCcgagagacactggcagctga	11	15	2	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	129455805	129455805	C	A	SNP	LMX1B	ENST00000355497	human	ensembl	69_37n	1	known	silent	c.744	p.V248	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1B	HGNC	ENSG00000136944	45	0	0	17	4	19.05	-	-	-	A	129455805	C	A	129455805	2	1	396	1	0	0	0	0	0	0	0	1	8918	842	30	2		2	LMX1B	9	129455805	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	21897329	129455805	11757626	77	40309										
MRPS2	0	genome.wustl.edu	37	chr9	138395757	138395757	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	atccccacagtgggcatcgtGgacaccaactgcaacccctg	9	16	0	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	138395757	138395757	G	T	SNP	MRPS2	ENST00000241600	human	ensembl	69_37n	1	known	silent	c.669	p.V223	1.000	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	47	0	0	32	6	15.79	-	-	-	T	138395757	G	T	138395757	2	4	396	1	0	0	0	0	0	0	0	1	9903	1335	47	4		4	MRPS2	9	138395757	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	8939952	138395757	2817674	78	40310										
PRKCQ	0	genome.wustl.edu	37	chr10	6504320	6504320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	accaagaatgatttcagcagCataaaacctgggggaaggag	12	7	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	6504320	6504320	C	T	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.1453	p.A485T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	57	0	0	20	6	23.08	-	-	-	T	6504320	C	T	6504320	3	4	396	1	0	0	0	0	1	0	0	0	12596	710	25	4	687	4	PRKCQ	10	6504320	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		6504320	129030427	79	40311										
PCDH15	0	genome.wustl.edu	37	chr10	55826581	55826581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ataaatttcttggcagataaGgatcaaacactggagcattg	9	6	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	55826581	55826581	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.2156	p.P719L	0.984	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	81	0	0	32	31	49.21	-	-	-	A	55826581	G	A	55826581	3	1	396	1	0	0	0	0	1	0	0	0	11584	1000	35	4	5394	4	PCDH15	10	55826581	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	49322261	55826581	79708166	80	40312										
PTEN	0	genome.wustl.edu	37	chr10	89692883	89692883	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acaatcatgttgcagcaattCactgtaaagctggaaaggga	10	7	2	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	89692883	89692883	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.367	p.H123D	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	79	0	0	54	15	21.74	-	-	-	G	89692883	C	G	89692883	3	3	396	1	0	0	0	0	1	0	0	0	12818	826	29	2	385	2	PTEN	10	89692883	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	33866302	89692883	45841864	81	40313										
ABLIM1	0	genome.wustl.edu	37	chr10	116199016	116199016	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ccatctgggagtgtctgcaaCagaaatgccagttccaggtg	12	10	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	116199016	116199016	C	T	SNP	ABLIM1	ENST00000533213	human	ensembl	69_37n	-1	known	splice_site	c.1884+2	e20+2	1.000	-	-	-	no_errors	ABLIM1	HGNC	ENSG00000099204	74	0	0	35	7	16.67	-	-	-	T	116199016	C	T	116199016	5	4	396	1	0	0	0	0	0	0	1	0	94	493	17	4		4	ABLIM1	10	116199016	Splice_Site	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	26506133	116199016	19335731	82	40314										
MUC2	0	genome.wustl.edu	37	chr11	1097877	1097877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtaaaacgaccccacacaagGactgcaccccatctcccctc	5	19	1	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	1097877	1097877	G	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.6970	p.D2324Y	0.000	smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	56	0	0	23	8	25.81	-	-	-	T	1097877	G	T	1097877	3	4	396	1	0	0	0	0	1	0	0	0	10047	1174	41	2	7104	2	MUC2	11	1097877	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		1097877	133908639	83	40315										
BRSK2	0	genome.wustl.edu	37	chr11	1463799	1463799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cagactttggcatggcgtccCtgcaggttggcgacagcctg	14	12	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	1463799	1463799	C	A	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	missense	c.631	p.L211M	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	68	0	0	19	9	32.14	-	-	-	A	1463799	C	A	1463799	3	1	396	1	0	0	0	0	1	0	0	0	1532	680	24	4	511	4	BRSK2	11	1463799	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	365922	1463799	133542717	84	40316										
GALNTL4	0	genome.wustl.edu	37	chr11	11454295	11454295	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	acgaagatgaacacgatgctCacctctggcaggctgtcagg	12	11	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	11454295	11454295	C	G	SNP	GALNTL4	ENST00000227756	human	ensembl	69_37n	-1	known	silent	c.468	p.V156	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL4	HGNC	ENSG00000110328	66	0	0	16	7	30.43	-	-	-	G	11454295	C	G	11454295	2	3	396	1	0	0	0	0	0	0	0	1	6273	813	29	2		2	GALNTL4	11	11454295	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	9990496	11454295	123552221	85	40317										
QSER1	0	genome.wustl.edu	37	chr11	32955888	32955888	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcattagatgtcaggcatgtGacttcagattttaactctat	7	7	4	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	32955888	32955888	G	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	silent	c.2697	p.V899	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	35	0	0	15	14	48.28	-	-	-	A	32955888	G	A	32955888	2	1	396	1	0	0	0	0	0	0	0	1	12965	1277	45	2		2	QSER1	11	32955888	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	21501593	32955888	102050628	86	40318										
RAG1	0	genome.wustl.edu	37	chr11	36596585	36596585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	atggacatggaagaagacatCttggaaggcatgagatccca	12	7	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	36596585	36596585	C	T	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	silent	c.1731	p.I577	0.983	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	68	0	0	16	23	58.97	-	-	-	T	36596585	C	T	36596585	2	4	396	1	0	0	0	0	0	0	0	1	13086	903	32	2		2	RAG1	11	36596585	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	3640697	36596585	98409931	87	40319										
FAT3	0	genome.wustl.edu	37	chr11	92577403	92577403	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcctgaatgtgtctgtgagtGatggtcgcttccaggtaccc	12	10	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	92577403	92577403	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.10870	p.D3624Y	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	39	0	0	24	8	25	-	-	-	T	92577403	G	T	92577403	3	4	396	1	0	0	0	0	1	0	0	0	5737	1290	45	2	10940	2	FAT3	11	92577403	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	55980818	92577403	42429113	88	40320										
EXPH5	0	genome.wustl.edu	37	chr11	108380564	108380564	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aaagctaactgttgttctttCccaaagatcccatagtcgat	6	10	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	108380564	108380564	C	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	silent	c.5670	p.G1890	1.000	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	44	0	0	27	9	25	-	-	-	A	108380564	C	A	108380564	2	1	396	1	0	0	0	0	0	0	0	1	5359	842	30	2		2	EXPH5	11	108380564	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	15803161	108380564	26625952	89	40321										
CACNA2D4	0	genome.wustl.edu	37	chr12	2024051	2024051	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agagagagcctgagtatttgGtcacagtgttatacaggtcc	12	7	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	12	2024051	2024051	G	T	SNP	CACNA2D4	ENST00000382722	human	ensembl	69_37n	-1	known	missense	c.278	p.T93N	0.984	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062	76	0	0	57	37	39.36	-	-	-	T	2024051	G	T	2024051	3	4	396	1	0	0	0	0	1	0	0	0	2576	1261	44	4	3283	4	CACNA2D4	12	2024051	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		2024051	131827844	90	40322										
BBS10	0	genome.wustl.edu	37	chr12	76740626	76740626	+	Frame_Shift_Del	DEL	C	C	-													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcaagcctagatgaacatatCttttggatctaaggataaga							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	12	76740626	76740626	C	-	DEL	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	frame_shift_del	c.1139	p.R380fs	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	42	0	0	37	7	15.91	-	-	-	-	76740626	C	-	76740626	7	5	396	1	0	1	0	1	0	0	0	0	1340	913	32	0	1036	0	BBS10	12	76740626	Frame_Shift_Del	DEL	C	TCGA-AR-A24Q-01A-12D-A167-09	74716575	76740626	57111269	91	40323										
KSR2	0	genome.wustl.edu	37	chr12	117968803	117968803	+	Frame_Shift_Del	DEL	G	G	-													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcgcccgggtcggcgtctccGgcaccggcaccacatctgaa							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	12	117968803	117968803	G	-	DEL	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	frame_shift_del	c.1745	p.P582fs	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	27	0	0	30	10	25	-	-	-	-	117968803	G	-	117968803	7	5	396	1	0	1	0	1	0	0	0	0	8636	1116	39	0	1143	0	KSR2	12	117968803	Frame_Shift_Del	DEL	G	TCGA-AR-A24Q-01A-12D-A167-09	41228177	117968803	15883092	92	40324										
STARD13	0	genome.wustl.edu	37	chr13	33739512	33739512	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aggtccttttcaagaaaatcAtgatcattcttgacagccac	6	10	4	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	13	33739512	33739512	A	G	SNP	STARD13	ENST00000336934	human	ensembl	69_37n	-1	known	silent	c.285	p.H95	1.000	pfam_SAM_2,superfamily_SAM/pointed	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121	68	0	0	26	6	18.75	-	-	-	G	33739512	A	G	33739512	2	3	396	1	0	0	0	0	0	0	0	1	15347	214	8	5		5	STARD13	13	33739512	Silent	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09		33739512	81430366	93	40325										
NBEA	0	genome.wustl.edu	37	chr13	36229093	36229093	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	taacagcagataatcgctatAttcttatctgtggattctgg	8	7	3	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	13	36229093	36229093	A	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.8074	p.I2692F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	73	0	0	15	16	51.61	-	-	-	T	36229093	A	T	36229093	3	4	396	1	0	0	0	0	1	0	0	0	10259	449	16	5	8284	5	NBEA	13	36229093	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	2489581	36229093	78940785	94	40326										
BCL2L2	0	genome.wustl.edu	37	chr14	23778024	23778024	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgcttcccttctctcccacaGgcggagttcacagctctata	7	15	3	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	23778024	23778024	G	A	SNP	BCL2L2	ENST00000250405	human	ensembl	69_37n	1	known	splice_site	c.433-1	e2-1	1.000	-	-	-	no_errors	BCL2L2	HGNC	ENSG00000129473	36	0	0	8	14	63.64	-	-	-	A	23778024	G	A	23778024	5	1	396	1	0	0	0	0	0	0	1	0	1378	1014	35	4	438	4	BCL2L2	14	23778024	Splice_Site	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		23778024	83571516	95	40327										
EFS	0	genome.wustl.edu	37	chr14	23829243	23829243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agggcggtggggggcacatcGtagacctgcggaaaggagtg	20	7	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	23829243	23829243	G	A	SNP	EFS	ENST00000216733	human	ensembl	69_37n	-1	known	silent	c.444	p.Y148	0.985	NULL	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	28	0	0	7	5	41.67	-	-	-	A	23829243	G	A	23829243	2	1	396	1	0	0	0	0	0	0	0	1	4994	1140	40	1		1	EFS	14	23829243	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	51219	23829243	83520297	96	40328										
SLC35F4	0	genome.wustl.edu	37	chr14	58056019	58056019	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gaaaaacataatgttccagtTtgttgaaaaccaagtcatga	7	6	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	58056019	58056019	T	G	SNP	SLC35F4	ENST00000339762	human	ensembl	69_37n	-1	known	missense	c.610	p.N204H	1.000	NULL	pfam_DMT,pfam_DUF914_euk	-	no_errors	SLC35F4	HGNC	ENSG00000151812	84	0	0	38	23	37.7	-	-	-	G	58056019	T	G	58056019	3	3	396	1	0	0	0	0	1	0	0	0	14680	1841	64	5	979	5	SLC35F4	14	58056019	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	34226776	58056019	49293521	97	40329										
PPP1R13B	0	genome.wustl.edu	37	chr14	104208267	104208267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgggagactgtggccttgacCctttatcagccaggaaaggc	13	10	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	104208267	104208267	C	A	SNP	PPP1R13B	ENST00000202556	human	ensembl	69_37n	-1	known	missense	c.1682	p.G561V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	106	0	0	67	28	29.47	-	-	-	A	104208267	C	A	104208267	3	1	396	1	0	0	0	0	1	0	0	0	12434	623	22	4	1618	4	PPP1R13B	14	104208267	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	46152248	104208267	3141273	98	40330										
MAP1A	0	genome.wustl.edu	37	chr15	43818417	43818417	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	caccaaactcaggagcaggaGagcctagtgcaggaggataa	13	9	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	43818417	43818417	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.4746	p.E1582D	0.369	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	33	0	0	16	7	30.43	-	-	-	T	43818417	G	T	43818417	3	4	396	1	0	0	0	0	1	0	0	0	9298	933	33	2	4748	2	MAP1A	15	43818417	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		43818417	58712975	99	40331										
SPATA5L1	0	genome.wustl.edu	37	chr15	45707816	45707816	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	agcaagagcaagcactccagCaattttgtttttggatgaaa	9	7	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	45707816	45707816	C	T	SNP	SPATA5L1	ENST00000531624	human	ensembl	69_37n	1	novel	nonsense	c.190	p.Q64*	1.000	pfam_ATPase_AAA_core	pfam_ATPase_AAA_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA5L1	HGNC	ENSG00000171763	42	0	0	27	4	12.9	-	-	-	T	45707816	C	T	45707816	4	4	396	1	0	0	0	0	0	1	0	0	15103	710	25	4	1694	4	SPATA5L1	15	45707816	Nonsense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	1889399	45707816	56823576	100	40332										
FBN1	0	genome.wustl.edu	37	chr15	48736765	48736765	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cttctcattttgaagactgtAtccaggtgggcaaatgcatc	9	9	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	48736765	48736765	A	G	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.6010	p.Y2004H	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	74	0	0	35	19	35.19	-	-	-	G	48736765	A	G	48736765	3	3	396	1	0	0	0	0	1	0	0	0	5748	449	16	5	2677	5	FBN1	15	48736765	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	3028949	48736765	53794627	101	40333										
HCN4	0	genome.wustl.edu	37	chr15	73615583	73615583	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtgctccgggagtcccaggcCtccccgggccccgggtggcg	17	17	0	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	73615583	73615583	C	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2851	p.G951C	0.003	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	16	0	0	5	4	44.44	-	-	-	A	73615583	C	A	73615583	3	1	396	1	0	0	0	0	1	0	0	0	7050	681	24	4	764	4	HCN4	15	73615583	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	24878818	73615583	28915809	102	40334										
ZNF592	0	genome.wustl.edu	37	chr15	85326113	85326113	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtgccggccgtgagtgtcatTgtcaagaacaccagccgcca	12	13	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	85326113	85326113	T	A	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	silent	c.207	p.I69	0.954	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	45	0	0	41	9	18	-	-	-	A	85326113	T	A	85326113	2	1	396	1	0	0	0	0	0	0	0	1	18118	1800	63	5		5	ZNF592	15	85326113	Silent	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	11710530	85326113	17205279	103	40335										
CNTNAP4	0	genome.wustl.edu	37	chr16	76482725	76482725	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	accctgggcagcctgctagaTgatcagcattggcattcagt	11	11	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	76482725	76482725	T	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	missense	c.801	p.D267E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	127	0	0	62	19	23.46	-	-	-	G	76482725	T	G	76482725	3	3	396	1	0	0	0	0	1	0	0	0	3679	1461	51	5	839	5	CNTNAP4	16	76482725	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09		76482725	13872028	104	40336										
CNTNAP4	0	genome.wustl.edu	37	chr16	76555164	76555164	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcttcatctggggtatttttAgagaacttggggattgctga	13	5	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	76555164	76555164	A	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	silent	c.2490	p.L830	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	117	0	0	100	31	23.66	-	-	-	G	76555164	A	G	76555164	2	3	396	1	0	0	0	0	0	0	0	1	3679	417	15	5		5	CNTNAP4	16	76555164	Silent	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	72439	76555164	13799589	105	40337										
MBTPS1	0	genome.wustl.edu	37	chr16	84101990	84101990	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aagggggccccgaggacctcTacaaagtagcccatgcttct	11	13	2	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	84101990	84101990	T	A	SNP	MBTPS1	ENST00000343411	human	ensembl	69_37n	-1	known	silent	c.2025	p.V675	0.091	NULL	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943	44	0	0	26	5	16.13	-	-	-	A	84101990	T	A	84101990	2	1	396	1	0	0	0	0	0	0	0	1	9432	1509	53	5		5	MBTPS1	16	84101990	Silent	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	7546826	84101990	6252763	106	40338										
ATP2C2	0	genome.wustl.edu	37	chr16	84488552	84488552	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gacgtcagcaaagaggccgcCaacatgatcctggtggatga	13	10	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	84488552	84488552	C	A	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	silent	c.2109	p.A703	1.000	superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	80	0	0	44	8	15.38	-	-	-	A	84488552	C	A	84488552	2	1	396	1	0	0	0	0	0	0	0	1	1148	581	21	4		4	ATP2C2	16	84488552	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	386562	84488552	5866201	107	40339										
ZBTB4	0	genome.wustl.edu	37	chr17	7366443	7366443	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cccaggacgcaggtcagtctCtgagatgcggcgcttgacga	14	12	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	7366443	7366443	C	A	SNP	ZBTB4	ENST00000311403	human	ensembl	69_37n	-1	known	nonsense	c.1858	p.E620*	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	37	0	0	28	12	30	-	-	-	A	7366443	C	A	7366443	4	1	396	1	0	0	0	0	0	1	0	0	17637	922	32	2	1187	2	ZBTB4	17	7366443	Nonsense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		7366443	73828767	108	40340										
MYH2	0	genome.wustl.edu	37	chr17	10424654	10424654	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ctcttcacccgcagtttgttCacctgggactcagcaatgtc	8	14	4	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	10424654	10424654	C	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.5769	p.V1923	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	106	0	0	121	26	17.69	-	-	-	T	10424654	C	T	10424654	2	4	396	1	0	0	0	0	0	0	0	1	10107	813	29	2		2	MYH2	17	10424654	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	3058211	10424654	70770556	109	40341										
FBXW10	0	genome.wustl.edu	37	chr17	18681814	18681814	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	atgtggagaaagcacaaaaaCaaggacaattggaaactcct	9	7	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	18681814	18681814	C	G	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	1	known	missense	c.2389	p.Q797E	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW10	HGNC	ENSG00000171931	52	0	0	30	4	11.76	-	-	-	G	18681814	C	G	18681814	3	3	396	1	0	0	0	0	1	0	0	0	5809	479	17	4	2413	4	FBXW10	17	18681814	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	8257160	18681814	62513396	110	40342										
TTLL6	0	genome.wustl.edu	37	chr17	46882267	46882267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggaactgtcccccttctcttCggagttttccccttcctggc	8	16	1	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	46882267	46882267	C	T	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	missense	c.190	p.E64K	0.122	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	141	0	0	38	54	58.7	-	-	-	T	46882267	C	T	46882267	3	4	396	1	0	0	0	0	1	0	0	0	16828	893	31	1	2622	1	TTLL6	17	46882267	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	28200453	46882267	34312943	111	40343										
SSTR2	0	genome.wustl.edu	37	chr17	71165749	71165749	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ctcttcatgctgggtctgccTttcttggctatgcaggtggc	12	11	4	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	71165749	71165749	T	A	SNP	SSTR2	ENST00000357585	human	ensembl	69_37n	1	known	silent	c.291	p.P97	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_2,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_5	-	no_errors	SSTR2	HGNC	ENSG00000180616	110	1	0.9	70	34	32.69	-	-	-	A	71165749	T	A	71165749	2	1	396	1	0	0	0	0	0	0	0	1	15289	1596	56	5		5	SSTR2	17	71165749	Silent	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	24283482	71165749	10029461	112	40344										
USH1G	0	genome.wustl.edu	37	chr17	72916079	72916079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcggccgccagcgtggcacgGgagacgctgtcctcgtccga	15	15	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	72916079	72916079	G	A	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	silent	c.852	p.S284	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	17	0	0	8	20	71.43	-	-	-	A	72916079	G	A	72916079	2	1	396	1	0	0	0	0	0	0	0	1	17132	1219	43	4		4	USH1G	17	72916079	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	1750330	72916079	8279131	113	40345										
RECQL5	0	genome.wustl.edu	37	chr17	73625808	73625808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cgagtacacatgggaggctgGtggaatgtcatactcattgg	14	7	2	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	73625808	73625808	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.1927	p.P643S	0.021	pfam_RecQ_helicase-like_5	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	46	0	0	31	15	32.61	-	-	-	A	73625808	G	A	73625808	3	1	396	1	0	0	0	0	1	0	0	0	13286	1261	44	4	1072	4	RECQL5	17	73625808	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	709729	73625808	7569402	114	40346										
ACTG1	0	genome.wustl.edu	37	chr17	79478492	79478492	+	Frame_Shift_Del	DEL	A	A	-													0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cagccaggtccagacgcaggAtggcgtgggggagggcgtag							TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	79478492	79478492	A	-	DEL	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	frame_shift_del	c.524	p.I175fs	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	40	0	0	24	7	21.21	-	-	-	-	79478492	A	-	79478492	7	5	396	1	0	1	0	1	0	0	0	0	196	333	12	0	615	0	ACTG1	17	79478492	Frame_Shift_Del	DEL	A	TCGA-AR-A24Q-01A-12D-A167-09	5852684	79478492	1716718	115	40347										
SIRT7	0	genome.wustl.edu	37	chr17	79870419	79870419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	cctctctgcttctgcacagcGacttccgactgtggctgcct	9	16	2	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	79870419	79870419	G	C	SNP	SIRT7	ENST00000328666	human	ensembl	69_37n	-1	known	missense	c.1076	p.S359W	0.288	NULL	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT7	HGNC	ENSG00000187531	65	0	0	55	9	14.06	-	-	-	C	79870419	G	C	79870419	3	2	396	1	0	0	0	0	1	0	0	0	14432	1059	37	3	130	3	SIRT7	17	79870419	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	391927	79870419	1324791	116	40348										
CD226	0	genome.wustl.edu	37	chr18	67613972	67613972	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aaaaaaacttgcccttacctGactgaaccacctgtatcacc	4	14	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	18	67613972	67613972	G	C	SNP	CD226	ENST00000280200	human	ensembl	69_37n	-1	known	nonsense	c.380	p.S127*	0.947	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD226	HGNC	ENSG00000150637	32	0	0	20	10	33.33	-	-	-	C	67613972	G	C	67613972	4	2	396	1	0	0	0	0	0	1	0	0	3015	1294	45	2	650	2	CD226	18	67613972	Nonsense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		67613972	10463276	117	40349										
SAFB	0	genome.wustl.edu	37	chr19	5654079	5654079	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ctgttttttatagatctacaAaccttaagagggatgataaa	7	5	1	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	5654079	5654079	A	G	SNP	SAFB	ENST00000588852	human	ensembl	69_37n	1	known	missense	c.1534	p.N512D	0.014	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	52	0	0	17	36	67.92	-	-	-	G	5654079	A	G	5654079	3	3	396	1	0	0	0	0	1	0	0	0	13892	14	1	5	1580	5	SAFB	19	5654079	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09		5654079	53474904	118	40350										
CACNA1A	0	genome.wustl.edu	37	chr19	13476202	13476202	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	accctatgattgcaaaaataAggattgcaaaaaataggagg	9	5	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	13476202	13476202	A	C	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.713	p.L238R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	45	0	0	49	17	25.76	-	-	-	C	13476202	A	C	13476202	3	2	396	1	0	0	0	0	1	0	0	0	2563	72	3	5	7093	5	CACNA1A	19	13476202	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	7822123	13476202	45652781	119	40351										
PSG1	0	genome.wustl.edu	37	chr19	43373177	43373177	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgatggtgatgtagggcttgGgcagcttcgctgtgtggata	17	5	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	43373177	43373177	G	T	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.719	p.P240H	0.016	pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	188	0	0	195	46	19.09	-	-	-	T	43373177	G	T	43373177	3	4	396	1	0	0	0	0	1	0	0	0	12733	1232	43	4	605	4	PSG1	19	43373177	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	29896975	43373177	15755806	120	40352										
PLAUR	0	genome.wustl.edu	37	chr19	44169580	44169580	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gtcttctctgagtgggtacaGcttttctccaccagctccag	9	13	3	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	44169580	44169580	G	C	SNP	PLAUR	ENST00000340093	human	ensembl	69_37n	-1	known	missense	c.198	p.S66R	0.985	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PLAUR	HGNC	ENSG00000011422	112	0	0	78	16	17.02	-	-	-	C	44169580	G	C	44169580	3	2	396	1	0	0	0	0	1	0	0	0	12097	962	34	4	925	4	PLAUR	19	44169580	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	796403	44169580	14959403	121	40353										
ZNF610	0	genome.wustl.edu	37	chr19	52869627	52869627	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aggcacaaattttctctaacCaatcatcagagaagtcacac	5	11	4	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	52869627	52869627	C	A	SNP	ZNF610	ENST00000327920	human	ensembl	69_37n	1	known	silent	c.996	p.T332	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	44	0	0	48	16	25	-	-	-	A	52869627	C	A	52869627	2	1	396	1	0	0	0	0	0	0	0	1	18132	581	21	4		4	ZNF610	19	52869627	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	8700047	52869627	6259356	122	40354										
ZNF808	0	genome.wustl.edu	37	chr19	53057483	53057483	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgtgacaaagttttcagtcaGaaatcaacccttgagagaca	8	8	3	4			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	53057483	53057483	G	T	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.1107	p.Q369H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	48	0	0	46	7	13.21	-	-	-	T	53057483	G	T	53057483	3	4	396	1	0	0	0	0	1	0	0	0	18266	933	33	2	1324	2	ZNF808	19	53057483	Missense_Mutation	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	187856	53057483	6071500	123	40355										
KIR3DL2	0	genome.wustl.edu	37	chr19	55377364	55377364	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gctggtgctccaacaaaaagAgtaagtctcacgaagcagag	11	9	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	55377364	55377364	A	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.1105	p.N369Y	0.183	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	298	1	0.33	154	168	52.17	-	-	-	T	55377364	A	T	55377364	3	4	396	1	0	0	0	0	1	0	0	0	8374	318	11	5	1131	5	KIR3DL2	19	55377364	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	2319881	55377364	3751619	124	40356										
CDS2	0	genome.wustl.edu	37	chr20	5163085	5163085	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	aagcattatcgactgcagttCtacatggtaaaggaaatgca	9	7	1	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	5163085	5163085	C	G	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	1	known	missense	c.582	p.F194L	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	133	0	0	63	18	22.22	-	-	-	G	5163085	C	G	5163085	3	3	396	1	0	0	0	0	1	0	0	0	3207	912	32	2	604	2	CDS2	20	5163085	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		5163085	57862435	125	40357										
TOP1	0	genome.wustl.edu	37	chr20	39751880	39751880	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gagaagatttacaacaaaacCcagcgggagaagtttgcctg	11	8	0	3			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	39751880	39751880	C	A	SNP	TOP1	ENST00000361337	human	ensembl	69_37n	1	known	silent	c.2241	p.T747	1.000	superfamily_DNA_brk_join_enz	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900	77	0	0	49	29	37.18	-	-	-	A	39751880	C	A	39751880	2	1	396	1	0	0	0	0	0	0	0	1	16459	610	22	4		4	TOP1	20	39751880	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	34588795	39751880	23273640	126	40358										
CHD6	0	genome.wustl.edu	37	chr20	40043952	40043952	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ctgaggcttccattgacaatCtgtccagtcacaggatggat	10	10	2	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	40043952	40043952	C	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.6813	p.Q2271	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	78	0	0	69	8	10.39	-	-	-	T	40043952	C	T	40043952	2	4	396	1	0	0	0	0	0	0	0	1	3358	912	32	2		2	CHD6	20	40043952	Silent	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	292072	40043952	22981568	127	40359										
PRIC285	0	genome.wustl.edu	37	chr20	62195294	62195294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcaggagccaggaatgggtgCatgtcgtccgtggtgaccaa	16	9	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	62195294	62195294	C	T	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	missense	c.4881	p.M1627I	1.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	35	0	0	23	6	20.69	-	-	-	T	62195294	C	T	62195294	3	4	396	1	0	0	0	0	1	0	0	0	12566	710	25	4	3116	4	PRIC285	20	62195294	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	22151342	62195294	830226	128	40360										
RUNX1	0	genome.wustl.edu	37	chr21	36164864	36164864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tcggagatggagggcagcgcGgggaactggcgcgggtcgct	21	9	0	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	21	36164864	36164864	G	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	silent	c.1011	p.P337	0.060	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	21	0	0	3	7	70	-	-	-	A	36164864	G	A	36164864	2	1	396	1	0	0	0	0	0	0	0	1	13832	1103	39	1		1	RUNX1	21	36164864	Silent	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09		36164864	11965031	129	40361										
PKDREJ	0	genome.wustl.edu	37	chr22	46653339	46653339	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	caagtagatttctgctgaagCttttctgtcaaaatcagcaa	7	8	4	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	22	46653339	46653339	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.5881	p.A1961S	0.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	48	0	0	40	23	36.51	-	-	-	A	46653339	C	A	46653339	3	1	396	1	0	0	0	0	1	0	0	0	12044	797	28	4	884	4	PKDREJ	22	46653339	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		46653339	4651227	130	40362										
PHKA2	0	genome.wustl.edu	37	chrX	18961827	18961827	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tgaaatgcaagaggctattaCctggcagtgctcgacctcat	10	10	1	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	18961827	18961827	C	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	splice_site	c.717+1	e7+1	1.000	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	56	0	0	13	9	40.91	-	-	-	T	18961827	C	T	18961827	5	4	396	1	0	0	0	0	0	0	1	0	11918	521	18	4	3097	4	PHKA2	23	18961827	Splice_Site	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09		18961827	136308733	131	40363										
KDM6A	0	genome.wustl.edu	37	chrX	44969495	44969495	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	tctatgaccaatttacattaGtaagtcaaatcaacatgtga	5	7	3	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	44969495	44969495	G	C	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	splice_site	c.4197+1	e28+1	1.000	-	-	-	no_errors	KDM6A	HGNC	ENSG00000147050	68	0	0	31	17	35.42	-	-	-	C	44969495	G	C	44969495	5	2	396	1	0	0	0	0	0	0	1	0	8190	1043	36	4	4287	4	KDM6A	23	44969495	Splice_Site	SNP	G	TCGA-AR-A24Q-01A-12D-A167-09	26007668	44969495	110301065	132	40364										
PHF8	0	genome.wustl.edu	37	chrX	54020123	54020123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ctggccagcaggccccaaggCtgaactctccttgccctttc	9	17	1	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	54020123	54020123	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1645	p.A549T	0.998	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	82	0	0	27	7	20.59	-	-	-	T	54020123	C	T	54020123	3	4	396	1	0	0	0	0	1	0	0	0	11914	797	28	4	1747	4	PHF8	23	54020123	Missense_Mutation	SNP	C	TCGA-AR-A24Q-01A-12D-A167-09	9050628	54020123	101250437	133	40365										
VSIG4	0	genome.wustl.edu	37	chrX	65253420	65253420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggctccggtcatccatctccAgggtgctcaattggagggat	13	11	3	0			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	65253420	65253420	A	T	SNP	VSIG4	ENST00000374737	human	ensembl	69_37n	-1	known	missense	c.308	p.L103Q	0.684	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG4	HGNC	ENSG00000155659	77	0	0	30	7	18.92	-	-	-	T	65253420	A	T	65253420	3	4	396	1	0	0	0	0	1	0	0	0	17322	188	7	5	923	5	VSIG4	23	65253420	Missense_Mutation	SNP	A	TCGA-AR-A24Q-01A-12D-A167-09	11233297	65253420	90017140	134	40366										
TBC1D8B	0	genome.wustl.edu	37	chrX	106097454	106097454	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	ggtaatattcgctatgaagaTatacatagtatgcgctgtcg	10	6	0	2			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	106097454	106097454	T	G	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.2280	p.D760E	0.999	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	56	0	0	27	18	40	-	-	-	G	106097454	T	G	106097454	3	3	396	1	0	0	0	0	1	0	0	0	15721	1403	49	5	2400	5	TBC1D8B	23	106097454	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	40844034	106097454	49173106	135	40367										
CXorf40A	0	genome.wustl.edu	37	chrX	148627223	148627223	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.154411764705882	21	0.0085214577016461	1.97637285575574	2.23924018139813	1.78579404466501	1	1	10	gcagccttatgctggctttgTcttaaatggaatcaagactg	10	8	2	1			TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	148627223	148627223	T	A	SNP	CXorf40A	ENST00000359293	human	ensembl	69_37n	1	known	missense	c.47	p.V16D	0.019	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	62	0	0	24	14	36.84	-	-	-	A	148627223	T	A	148627223	3	1	396	1	0	0	0	0	1	0	0	0	4139	1667	58	5	49	5	CXorf40A	23	148627223	Missense_Mutation	SNP	T	TCGA-AR-A24Q-01A-12D-A167-09	42529769	148627223	6643337	136	40368										
INPP5B	0	genome.wustl.edu	37	chr1	38341357	38341357	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	gaacaatttcctccagtgtcTtccggtaaagctcgtcattt	7	11	2	0			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	1	38341357	38341357	T	A	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.1949	p.K650M	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	41	0	0	11	15	57.69	-	-	-	A	38341357	T	A	38341357	3	1	397	1	0	0	0	0	1	0	0	0	7809	1609	56	5	1064	5	INPP5B	1	38341357	Missense_Mutation	SNP	T	TCGA-AR-A24R-01A-11D-A167-09		38341357	210909264	1	40369										
ADAR	0	genome.wustl.edu	37	chr1	154557805	154557805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	ttgccttttggaatcatataTgctgactctgccaacctagg	8	10	2	1			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	1	154557805	154557805	T	G	SNP	ADAR	ENST00000292205	human	ensembl	69_37n	-1	known	missense	c.3460	p.I1154L	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	44	0	0	46	21	31.34	-	-	-	G	154557805	T	G	154557805	3	3	397	1	0	0	0	0	1	0	0	0	281	1464	51	5	357	5	ADAR	1	154557805	Missense_Mutation	SNP	T	TCGA-AR-A24R-01A-11D-A167-09	116216448	154557805	94692816	2	40370										
VWA3B	0	genome.wustl.edu	37	chr2	98928335	98928335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	cttctggccactgaaagaagCggacacgcaggattccagag	12	11	1	3			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	2	98928335	98928335	C	T	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	missense	c.3575	p.A1192V	0.000	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	20	0	0	13	7	31.82	-	-	-	T	98928335	C	T	98928335	3	4	397	1	0	0	0	0	1	0	0	0	17338	768	27	1	3677	1	VWA3B	2	98928335	Missense_Mutation	SNP	C	TCGA-AR-A24R-01A-11D-A167-09		98928335	144271038	3	40371										
LETM1	0	genome.wustl.edu	37	chr4	1818540	1818540	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	aagccatcgatctgcccgatCatttgctgcaccctttttgt	7	13	2	0			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	4	1818540	1818540	C	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.1845	p.M615I	1.000	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	79	0	0	61	22	26.51	-	-	-	T	1818540	C	T	1818540	3	4	397	1	0	0	0	0	1	0	0	0	8788	826	29	2	386	2	LETM1	4	1818540	Missense_Mutation	SNP	C	TCGA-AR-A24R-01A-11D-A167-09		1818540	189335736	4	40372										
WDFY3	0	genome.wustl.edu	37	chr4	85731339	85731339	+	Frame_Shift_Del	DEL	A	A	-													0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	aacacagtgtgaagaagttcAaacacttgattctggttcac							TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	4	85731339	85731339	A	-	DEL	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	frame_shift_del	c.2046	p.F682fs	0.993	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	42	0	0	26	14	35	-	-	-	-	85731339	A	-	85731339	7	5	397	1	0	1	0	1	0	0	0	0	17367	127	5	0	8797	0	WDFY3	4	85731339	Frame_Shift_Del	DEL	A	TCGA-AR-A24R-01A-11D-A167-09	83912799	85731339	105422937	5	40373										
ARHGEF38	0	genome.wustl.edu	37	chr4	106552056	106552058	+	In_Frame_Del	DEL	AGA	AGA	-													0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	tttgttttgcatttatcaggAgaagtattcttgcagattaa							TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	4	106552056	106552058	AGA	-	DEL	ARHGEF38	ENST00000265154	human	ensembl	69_37n	1	known	in_frame_del	c.510_512	p.E171in_frame_del	0.987:1.000:1.000	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	61	0	0	43	11	20.37	-	-	-	-	106552058	AGA	-	106552056	7	5	397	1	0	1	0	1	0	0	0	0	909	318	11	0	524	0	ARHGEF38	4	106552056	In_Frame_Del	DEL	AGA	TCGA-AR-A24R-01A-11D-A167-09	20820717	106552056	84602220	6	40374										
MLLT4	0	genome.wustl.edu	37	chr6	168323655	168323655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	agctggcaagtattttgaggGtaccatgaagtgaaatggat	13	4	0	3			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	6	168323655	168323655	G	T	SNP	MLLT4	ENST00000497596	human	ensembl	69_37n	1	putative	missense	c.496	p.V166L	0.000	NULL	pfam_Dil_domain,pfscan_Dilute	-	no_start_codon	MLLT4	HGNC	ENSG00000130396	48	0	0	11	11	50	-	-	-	T	168323655	G	T	168323655	3	4	397	1	0	0	0	0	1	0	0	0	9700	1276	44	4		4	MLLT4	6	168323655	Missense_Mutation	SNP	G	TCGA-AR-A24R-01A-11D-A167-09		168323655	2791412	7	40375										
DGKB	0	genome.wustl.edu	37	chr7	14737756	14737756	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	acatcccactcaaggtattcTgcaacatgcatcatctgact	5	13	4	1			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	7	14737756	14737756	T	C	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	silent	c.555	p.A185	0.996	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	60	0	0	31	22	41.51	-	-	-	C	14737756	T	C	14737756	2	2	397	1	0	0	0	0	0	0	0	1	4502	1567	55	5		5	DGKB	7	14737756	Silent	SNP	T	TCGA-AR-A24R-01A-11D-A167-09		14737756	144400907	8	40376										
GDAP1	0	genome.wustl.edu	37	chr8	75263607	75263607	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	ccttggtttatgcgtttgaaCtcaactggagaagtgcctgt	11	8	1	2			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	8	75263607	75263607	C	T	SNP	GDAP1	ENST00000220822	human	ensembl	69_37n	1	known	silent	c.216	p.N72	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381	81	0	0	92	28	23.33	-	-	-	T	75263607	C	T	75263607	2	4	397	1	0	0	0	0	0	0	0	1	6358	564	20	4		4	GDAP1	8	75263607	Silent	SNP	C	TCGA-AR-A24R-01A-11D-A167-09		75263607	71100415	9	40377										
OR5C1	0	genome.wustl.edu	37	chr9	125551282	125551282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	cctcctgggcatcacaaatcGctgggacctgcgtgtggccc	12	15	1	0			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	9	125551282	125551282	G	A	SNP	OR5C1	ENST00000373680	human	ensembl	69_37n	1	known	missense	c.71	p.R24H	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215	58	0	0	18	20	51.28	-	-	-	A	125551282	G	A	125551282	3	1	397	1	0	0	0	0	1	0	0	0	11226	1087	38	1	73	1	OR5C1	9	125551282	Missense_Mutation	SNP	G	TCGA-AR-A24R-01A-11D-A167-09		125551282	15662149	10	40378										
CHUK	0	genome.wustl.edu	37	chr10	101978864	101978864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	aatcaacagtggctgtgtaaGgcttattctcaaagagctct	9	8	3	1			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	10	101978864	101978864	G	A	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.590	p.P197L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	49	0	0	25	27	51.92	-	-	-	A	101978864	G	A	101978864	3	1	397	1	0	0	0	0	1	0	0	0	3445	1000	35	4	1707	4	CHUK	10	101978864	Missense_Mutation	SNP	G	TCGA-AR-A24R-01A-11D-A167-09		101978864	33555883	11	40379										
APPL2	0	genome.wustl.edu	37	chr12	105589107	105589107	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	actgcttgcagagcggtctgAttcaacttgatcgcgactgc	11	11	2	3			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	12	105589107	105589107	A	C	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	missense	c.1191	p.N397K	0.998	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	80	0	0	52	17	24.64	-	-	-	C	105589107	A	C	105589107	3	2	397	1	0	0	0	0	1	0	0	0	820	330	12	5	853	5	APPL2	12	105589107	Missense_Mutation	SNP	A	TCGA-AR-A24R-01A-11D-A167-09		105589107	28262788	12	40380										
OR4N5	0	genome.wustl.edu	37	chr14	20612744	20612744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	tcatctttcctttgatgaacCctgttatttatacgcttcgc	5	11	2	2			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	14	20612744	20612744	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	69_37n	1	known	missense	c.850	p.P284S	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4N5	HGNC	ENSG00000184394	35	0	0	38	17	30.91	-	-	-	T	20612744	C	T	20612744	3	4	397	1	0	0	0	0	1	0	0	0	11152	623	22	4	852	4	OR4N5	14	20612744	Missense_Mutation	SNP	C	TCGA-AR-A24R-01A-11D-A167-09		20612744	86736796	13	40381										
TMED10	0	genome.wustl.edu	37	chr14	75643124	75643124	+	Frame_Shift_Del	DEL	T	T	-													0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	atctcgtacgcgccagtcacTagcaggtccttgtgaatctc							TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	14	75643124	75643124	T	-	DEL	TMED10	ENST00000303575	human	ensembl	69_37n	-1	known	frame_shift_del	c.159	p.V54fs	0.998	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348	17	0	0	11	5	31.25	-	-	-	-	75643124	T	-	75643124	7	5	397	1	0	1	0	1	0	0	0	0	16098	1509	53	0	520	0	TMED10	14	75643124	Frame_Shift_Del	DEL	T	TCGA-AR-A24R-01A-11D-A167-09	55030380	75643124	31706416	14	40382			1	70		2	2	19	N	T_CTCC	1.395485e-05
TMED10	0	genome.wustl.edu	37	chr14	75643142	75643145	+	Frame_Shift_Del	DEL	CTCC	CTCC	-													0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	actagcaggtccttgtgaatCtcctcacggaggcacttgcg							TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	CTCC	CTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	14	75643142	75643145	CTCC	-	DEL	TMED10	ENST00000303575	human	ensembl	69_37n	-1	known	frame_shift_del	c.141_138	p.E47fs	1.000:1.000:1.000:1.000	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348	20	0	0	15	5	25	-	-	-	-	75643145	CTCC	-	75643142	7	5	397	1	0	1	0	1	0	0	0	0	16098	912	32	0	538	0	TMED10	14	75643142	Frame_Shift_Del	DEL	CTCC	TCGA-AR-A24R-01A-11D-A167-09	18	75643142	31706398	15	40383			1	70		2	2	19	N	T_CTCC	1.395485e-05
TTLL5	0	genome.wustl.edu	37	chr14	76187037	76187037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	cctttgttcctcatcgcagcAgttgttttggtaaggagact	10	9	1	1			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	14	76187037	76187037	A	G	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.1033	p.S345G	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	62	0	0	49	30	37.97	-	-	-	G	76187037	A	G	76187037	3	3	397	1	0	0	0	0	1	0	0	0	16827	188	7	5	1075	5	TTLL5	14	76187037	Missense_Mutation	SNP	A	TCGA-AR-A24R-01A-11D-A167-09	543895	76187037	31162503	16	40384										
ZDHHC22	0	genome.wustl.edu	37	chr14	77600207	77600207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	ggatcaacagcagctggtggCagcagaagccggcgcaggcc	16	12	1	1			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	14	77600207	77600207	C	T	SNP	ZDHHC22	ENST00000319374	human	ensembl	69_37n	-1	known	missense	c.611	p.C204Y	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_SSD,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC22	HGNC	ENSG00000177108	28	0	0	14	9	39.13	-	-	-	T	77600207	C	T	77600207	3	4	397	1	0	0	0	0	1	0	0	0	17709	710	25	4	184	4	ZDHHC22	14	77600207	Missense_Mutation	SNP	C	TCGA-AR-A24R-01A-11D-A167-09	1413170	77600207	29749333	17	40385										
PIGW	0	genome.wustl.edu	37	chr17	34894403	34894403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	ttgtggtcaatctctatatgTtttccaactgtttaattgta	6	6	2	0			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	17	34894403	34894403	T	C	SNP	PIGW	ENST00000328396	human	ensembl	69_37n	1	known	missense	c.1453	p.F485L	0.997	pirsf_GWT1	pfam_GWT1,pirsf_GWT1	-	no_errors	PIGW	HGNC	ENSG00000184886	18	0	0	15	7	31.82	-	-	-	C	34894403	T	C	34894403	3	2	397	1	0	0	0	0	1	0	0	0	11976	1725	60	5	1455	5	PIGW	17	34894403	Missense_Mutation	SNP	T	TCGA-AR-A24R-01A-11D-A167-09		34894403	46300807	18	40386										
DNAI2	0	genome.wustl.edu	37	chr17	72310298	72310298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	gaagaccaggtggtggaggaGggagaggaagcagcggggga	23	4	0	2			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	17	72310298	72310298	G	A	SNP	DNAI2	ENST00000307504	human	ensembl	69_37n	1	known	missense	c.1177	p.G393R	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595	72	0	0	78	15	16.13	-	-	-	A	72310298	G	A	72310298	3	1	397	1	0	0	0	0	1	0	0	0	4645	991	35	4	1807	4	DNAI2	17	72310298	Missense_Mutation	SNP	G	TCGA-AR-A24R-01A-11D-A167-09	37415895	72310298	8884912	19	40387										
REXO1	0	genome.wustl.edu	37	chr19	1825883	1825883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	gagatcctcctcttctgcccGgggaacagagtggtcagacc	12	13	3	3			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	19	1825883	1825883	G	A	SNP	REXO1	ENST00000170168	human	ensembl	69_37n	-1	known	silent	c.1971	p.P657	0.862	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	40	0	0	24	13	35.14	-	-	-	A	1825883	G	A	1825883	2	1	397	1	0	0	0	0	0	0	0	1	13324	1103	39	1		1	REXO1	19	1825883	Silent	SNP	G	TCGA-AR-A24R-01A-11D-A167-09		1825883	57303100	20	40388										
THOP1	0	genome.wustl.edu	37	chr19	2807034	2807034	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	atggccaagaccagccagacCgtggccaccttcctaggtag	11	14	0	2			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	19	2807034	2807034	C	T	SNP	THOP1	ENST00000307741	human	ensembl	69_37n	1	known	silent	c.870	p.T290	0.152	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	THOP1	HGNC	ENSG00000172009	48	0	0	17	6	26.09	-	-	-	T	2807034	C	T	2807034	2	4	397	1	0	0	0	0	0	0	0	1	15966	639	23	1		1	THOP1	19	2807034	Silent	SNP	C	TCGA-AR-A24R-01A-11D-A167-09	981151	2807034	56321949	21	40389										
SUPT5H	0	genome.wustl.edu	37	chr19	39959953	39959953	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	ggacaacgtggaggtctgtgAgggtgagctcatcaacctgc	15	9	3	2			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	19	39959953	39959953	A	C	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.1289	p.E430A	1.000	superfamily_Translation_prot_SH3-like,smart_KOW,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	38	0	0	8	8	50	-	-	-	C	39959953	A	C	39959953	3	2	397	1	0	0	0	0	1	0	0	0	15490	304	11	5	1347	5	SUPT5H	19	39959953	Missense_Mutation	SNP	A	TCGA-AR-A24R-01A-11D-A167-09	37152919	39959953	19169030	22	40390										
RUNX1	0	genome.wustl.edu	37	chr21	36171623	36171624	+	Frame_Shift_Del	DEL	AG	AG	-													0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	agtcgactggaaagttctgcAgagagggttgtcatgccgct							TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	21	36171623	36171624	AG	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.942_941	p.S314fs	0.839:0.999	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	66	0	0	41	30	41.67	-	-	-	-	36171624	AG	-	36171623	7	5	397	1	0	1	0	1	0	0	0	0	13832	175	7	0	508	0	RUNX1	21	36171623	Frame_Shift_Del	DEL	AG	TCGA-AR-A24R-01A-11D-A167-09		36171623	11958272	23	40391										
CXorf65	0	genome.wustl.edu	37	chrX	70325861	70325861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.994628167771038	0.623824451410658	NA	0.623824451410658	1	1	0	agcctctacctggtggcccaCgttccaccttacaaacgtag	8	15	1	0			TCGA-AR-A24R-01A-11D-A167-09	TCGA-AR-A24R-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baf43433-0001-4495-a37f-9132eb213157	b45104f7-fe20-40de-ae99-af24c080a284	X	70325861	70325861	C	T	SNP	CXorf65	ENST00000374251	human	ensembl	69_37n	-1	known	missense	c.239	p.R80H	0.812	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165	64	0	0	40	21	34.43	-	-	-	T	70325861	C	T	70325861	3	4	397	1	0	0	0	0	1	0	0	0	4148	536	19	1	328	1	CXorf65	23	70325861	Missense_Mutation	SNP	C	TCGA-AR-A24R-01A-11D-A167-09		70325861	84944699	24	40392										
BTBD19	0	genome.wustl.edu	37	chr1	45275937	45275937	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	aggaggtatttgcccatcggTgcttgttggcctgtagatgc	14	8	0	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	1	45275937	45275937	T	A	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	1	known	missense	c.139	p.C47S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD19	HGNC	ENSG00000222009	45	0	0	36	8	17.39	-	-	-	A	45275937	T	A	45275937	3	1	398	1	0	0	0	0	1	0	0	0	1551	1696	59	5	145	5	BTBD19	1	45275937	Missense_Mutation	SNP	T	TCGA-AR-A24S-01A-11D-A167-09		45275937	203974684	1	40393										
ZNF648	0	genome.wustl.edu	37	chr1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gcacgaggcgcgagggctgcGcgaaggccacgccgcagtca	17	14	1	0			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	1	182025773	182025773	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.1373	p.A458V	0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	31	0	0	22	7	24.14	-	-	-	A	182025773	G	A	182025773	3	1	398	1	0	0	0	0	1	0	0	0	18159	1087	38	1	337	1	ZNF648	1	182025773	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	136749836	182025773	67224848	2	40394										
PDC	0	genome.wustl.edu	37	chr1	186413472	186413472	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tgatcttcagttccttttcaAttgtttctaggaattgcttt	6	7	4	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	1	186413472	186413472	A	G	SNP	PDC	ENST00000340129	human	ensembl	69_37n	-1	known	missense	c.380	p.I127T	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDC	HGNC	ENSG00000116703	45	0	0	40	23	36.51	-	-	-	G	186413472	A	G	186413472	3	3	398	1	0	0	0	0	1	0	0	0	11687	101	4	5	364	5	PDC	1	186413472	Missense_Mutation	SNP	A	TCGA-AR-A24S-01A-11D-A167-09	4387699	186413472	62837149	3	40395										
PNPT1	0	genome.wustl.edu	37	chr2	55894154	55894154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gtcctctttgaaataatgctGatccatgaagggttttaaac	8	7	1	3			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	2	55894154	55894154	G	A	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.1148	p.S383L	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	87	0	0	69	10	12.66	-	-	-	A	55894154	G	A	55894154	3	1	398	1	0	0	0	0	1	0	0	0	12247	1294	45	2	1267	2	PNPT1	2	55894154	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09		55894154	187305219	4	40396										
RALB	0	genome.wustl.edu	37	chr2	121043616	121043616	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	agggtttcttcttgtgttctCaatcacagaacatgaatcct	7	9	4	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	2	121043616	121043616	C	T	SNP	RALB	ENST00000474855	human	ensembl	69_37n	1	known	missense	c.347	p.S116L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118	57	0	0	62	13	17.11	-	-	-	T	121043616	C	T	121043616	3	4	398	1	0	0	0	0	1	0	0	0	13094	838	29	2	287	2	RALB	2	121043616	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	65149462	121043616	122155757	5	40397										
CHL1	0	genome.wustl.edu	37	chr3	447268	447268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gctgacagcttagtcgaataCggagagggagaccatggtct	14	8	1	3			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	3	447268	447268	C	T	SNP	CHL1	ENST00000445697	human	ensembl	69_37n	1	known	missense	c.950	p.T317	0.959	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHL1	HGNC	ENSG00000134121	48	0	0	18	5	21.74	-	-	-	T	447268	C	T	447268	3	4	398	1	0	0	0	0	1	0	0	0	3378	547	19	1	3651	1	CHL1	3	447268	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		447268	197575162	6	40398										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	74	0	0	33	30	47.62	-	-	-	A	178936082	G	A	178936082	3	1	398	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	178488814	178936082	19086348	7	40399										
MASP1	0	genome.wustl.edu	37	chr3	186961340	186961340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tgatctcagacttgtatgtgGtgaggttgttccttgtagag	13	5	1	4			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	3	186961340	186961340	G	C	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	missense	c.1160	p.T387S	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	107	0	0	78	12	13.33	-	-	-	C	186961340	G	C	186961340	3	2	398	1	0	0	0	0	1	0	0	0	9393	1261	44	4	1859	4	MASP1	3	186961340	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	8025258	186961340	11061090	8	40400										
KIAA1109	0	genome.wustl.edu	37	chr4	123202768	123202768	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	aagtgttaatcaaactcctgTtgaaacaaatgaatttcctc	5	8	1	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	4	123202768	123202768	T	A	SNP	KIAA1109	ENST00000419325	human	ensembl	69_37n	1	putative	nonsense	c.2748	p.C916*	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1109	HGNC	ENSG00000138688	57	0	0	39	13	25	-	-	-	A	123202768	T	A	123202768	4	1	398	1	0	0	0	0	0	1	0	0	8260	1725	60	5	9074	5	KIAA1109	4	123202768	Nonsense_Mutation	SNP	T	TCGA-AR-A24S-01A-11D-A167-09		123202768	67951508	9	40401										
KIAA1109	0	genome.wustl.edu	37	chr4	123271039	123271039	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ttcgtccatggagatttgaaGtgggatattttccaagtaat	10	5	0	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	4	123271039	123271039	G	C	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.13659	p.K4553N	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	62	0	0	48	7	12.73	-	-	-	C	123271039	G	C	123271039	3	2	398	1	0	0	0	0	1	0	0	0	8260	1020	36	4	13969	4	KIAA1109	4	123271039	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	68271	123271039	67883237	10	40402										
PDCD6	0	genome.wustl.edu	37	chr5	272863	272863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gtggagtgatatcagacaccGagcttcagcaagctctctcc	10	12	3	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	5	272863	272863	G	A	SNP	PDCD6	ENST00000264933	human	ensembl	69_37n	1	known	missense	c.139	p.E47K	0.989	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	PDCD6	HGNC	ENSG00000249915	67	0	0	32	11	25.58	-	-	-	A	272863	G	A	272863	3	1	398	1	0	0	0	0	1	0	0	0	11696	1059	37	1	145	1	PDCD6	5	272863	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09		272863	180642397	11	40403										
PCDHB11	0	genome.wustl.edu	37	chr5	140581057	140581057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ccgctgcagaacggctccgcGccctgcaccgagctggtgcc	13	18	0	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	5	140581057	140581057	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	silent	c.1710	p.A570	0.001	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	23	0	0	8	4	30.77	-	-	-	A	140581057	G	A	140581057	2	1	398	1	0	0	0	0	0	0	0	1	11609	1074	38	1		1	PCDHB11	5	140581057	Silent	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	140308194	140581057	40334203	12	40404										
WDR46	0	genome.wustl.edu	37	chr6	33255278	33255278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	aagcagtgcctcagaatggaGaaacctgggggagaggaaga	16	6	1	4			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	6	33255278	33255278	G	C	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	missense	c.733	p.L245V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	34	0	0	25	6	19.35	-	-	-	C	33255278	G	C	33255278	3	2	398	1	0	0	0	0	1	0	0	0	17396	942	33	2	1131	2	WDR46	6	33255278	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09		33255278	137859789	13	40405										
NDUFA4	0	genome.wustl.edu	37	chr7	10978513	10978514	+	Frame_Shift_Ins	INS	-	-	G													0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	agttccaataaatacaaagaINSgggggatcaactaaaccaaa							TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	7	10978513	10978514	-	G	INS	NDUFA4	ENST00000339600	human	ensembl	69_37n	-1	known	frame_shift_ins	c.53_52	p.L18fs	0.961:0.958	NULL	NULL	-	no_errors	NDUFA4	HGNC	ENSG00000189043	41	0	0	33	6	15.38	-	-	-	G	10978514	-	G	10978513	7	5	398	1	0	1	1	0	0	0	0	0	10338	304	11	0	204	0	NDUFA4	7	10978513	Frame_Shift_Ins	INS	-	TCGA-AR-A24S-01A-11D-A167-09		10978513	148160150	14	40406										
AKAP9	0	genome.wustl.edu	37	chr7	91643582	91643582	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ggtgatgaaggaaagcctttAcatctgctcattggaaaact	10	7	2	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	7	91643582	91643582	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	silent	c.3588	p.L1196	0.092	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	86	0	0	75	15	16.67	-	-	-	G	91643582	A	G	91643582	2	3	398	1	0	0	0	0	0	0	0	1	459	388	14	5		5	AKAP9	7	91643582	Silent	SNP	A	TCGA-AR-A24S-01A-11D-A167-09	80665069	91643582	67495081	15	40407										
RELN	0	genome.wustl.edu	37	chr7	103206817	103206817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tttgagagctgtcattcattCctataagaacatcatccaaa	5	9	3	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	7	103206817	103206817	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4790	p.G1597E	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	58	0	0	54	11	16.92	-	-	-	T	103206817	C	T	103206817	3	4	398	1	0	0	0	0	1	0	0	0	13303	855	30	2	5724	2	RELN	7	103206817	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	11563235	103206817	55931846	16	40408										
MLL3	0	genome.wustl.edu	37	chr7	151945451	151945451	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tagtggaagagtgacagattCcatgactaattttggaggcc	12	6	0	4			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	7	151945451	151945451	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.2068	p.E690*	0.069	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	79	0	0	69	27	28.12	-	-	-	A	151945451	C	A	151945451	4	1	398	1	0	0	0	0	0	1	0	0	9693	864	30	2	12851	2	MLL3	7	151945451	Nonsense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	48738634	151945451	7193212	17	40409										
ATP6V1B2	0	genome.wustl.edu	37	chr8	20074770	20074770	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tgctgccctcactatcacggTtaatgaagtctgctattgga	9	10	3	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	8	20074770	20074770	T	C	SNP	ATP6V1B2	ENST00000276390	human	ensembl	69_37n	1	known	silent	c.1201	p.L401	0.998	tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416	80	0	0	34	11	24.44	-	-	-	C	20074770	T	C	20074770	2	2	398	1	0	0	0	0	0	0	0	1	1183	1722	60	5		5	ATP6V1B2	8	20074770	Silent	SNP	T	TCGA-AR-A24S-01A-11D-A167-09		20074770	126289252	18	40410										
COL5A1	0	genome.wustl.edu	37	chr9	137707822	137707822	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gacaaaggagatgatggtgaAcccgggcagacggtgagtcc	16	8	0	5			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	9	137707822	137707822	A	G	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	silent	c.4110	p.E1370	0.400	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	66	0	0	56	10	14.93	-	-	-	G	137707822	A	G	137707822	2	3	398	1	0	0	0	0	0	0	0	1	3726	40	2	5		5	COL5A1	9	137707822	Silent	SNP	A	TCGA-AR-A24S-01A-11D-A167-09		137707822	3505609	19	40411										
TYR	0	genome.wustl.edu	37	chr11	88911832	88911832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ttcactattccatattgggaCtggcgggatgcagaaaagtg	12	7	1	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	11	88911832	88911832	C	A	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	missense	c.711	p.D237E	0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	50	0	0	32	5	13.51	-	-	-	A	88911832	C	A	88911832	3	1	398	1	0	0	0	0	1	0	0	0	16910	564	20	4	713	4	TYR	11	88911832	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		88911832	46094684	20	40412										
CBL	0	genome.wustl.edu	37	chr11	119103255	119103255	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ctaccagcatctccgtactaTcttgtcaagatatgagggga	9	10	3	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	11	119103255	119103255	T	C	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	missense	c.293	p.I98T	1.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	49	0	0	37	7	15.91	-	-	-	C	119103255	T	C	119103255	3	2	398	1	0	0	0	0	1	0	0	0	2725	1435	50	5	299	5	CBL	11	119103255	Missense_Mutation	SNP	T	TCGA-AR-A24S-01A-11D-A167-09	30191423	119103255	15903261	21	40413										
PELI2	0	genome.wustl.edu	37	chr14	56763462	56763462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ggcaggagattaacgccgccCggcctcagtgtcctgtgggg	16	12	1	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	14	56763462	56763462	C	T	SNP	PELI2	ENST00000267460	human	ensembl	69_37n	1	known	missense	c.841	p.R281W	0.998	pfam_Pellino	pfam_Pellino	-	no_errors	PELI2	HGNC	ENSG00000139946	29	0	0	24	4	14.29	-	-	-	T	56763462	C	T	56763462	3	4	398	1	0	0	0	0	1	0	0	0	11795	643	23	1	863	1	PELI2	14	56763462	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		56763462	50586078	22	40414										
FLRT2	0	genome.wustl.edu	37	chr14	86088323	86088323	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ggggtggaagacggggccttCcgggaggctattagcctcaa	17	9	1	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	14	86088323	86088323	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	silent	c.465	p.F155	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	28	0	0	30	5	14.29	-	-	-	T	86088323	C	T	86088323	2	4	398	1	0	0	0	0	0	0	0	1	5985	854	30	2		2	FLRT2	14	86088323	Silent	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	29324861	86088323	21261217	23	40415										
AHNAK2	0	genome.wustl.edu	37	chr14	105416976	105416976	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tccaccttggggcctttcagGtccagcttggggcccttaac	11	14	1	0			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	14	105416976	105416976	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.4812	p.D1604	0.013	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	88	0	0	73	20	21.51	-	-	-	A	105416976	G	A	105416976	2	1	398	1	0	0	0	0	0	0	0	1	415	1252	44	4		4	AHNAK2	14	105416976	Silent	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	19328653	105416976	1932564	24	40416										
IL4R	0	genome.wustl.edu	37	chr16	27375135	27375135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tgtctccgtgggacccacatAcatgagggtctcttaggtgc	12	11	2	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	16	27375135	27375135	A	G	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.2462	p.Y821C	0.000	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	26	0	0	9	6	37.5	-	-	-	G	27375135	A	G	27375135	3	3	398	1	0	0	0	0	1	0	0	0	7752	391	14	5	2514	5	IL4R	16	27375135	Missense_Mutation	SNP	A	TCGA-AR-A24S-01A-11D-A167-09		27375135	62979618	25	40417										
TP53	0	genome.wustl.edu	37	chr17	7577096	7577096	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tctcttcctctgtgcgccggTctctcccaggacaggcacaa	9	16	3	0			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	17	7577096	7577096	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.842	p.D281V	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	63	0	0	13	15	53.57	-	-	-	A	7577096	T	A	7577096	3	1	398	1	0	0	0	0	1	0	0	0	16477	1667	58	5	444	5	TP53	17	7577096	Missense_Mutation	SNP	T	TCGA-AR-A24S-01A-11D-A167-09		7577096	73618114	26	40418										
RHBDL3	0	genome.wustl.edu	37	chr17	30648095	30648095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gccgtgggcatcaccctgggCgtggtggtcctgaggaacta	16	11	1	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	17	30648095	30648095	C	T	SNP	RHBDL3	ENST00000431505	human	ensembl	69_37n	1	putative	missense	c.961	p.R321C	0.932	NULL	pfam_Peptidase_S54_rhomboid_dom,pfscan_EF_HAND_2	-	no_stop_codon	RHBDL3	HGNC	ENSG00000141314	83	0	0	63	12	16	-	-	-	T	30648095	C	T	30648095	3	4	398	1	0	0	0	0	1	0	0	0	13407	755	27	1	1096	1	RHBDL3	17	30648095	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	23070999	30648095	50547115	27	40419										
MUC16	0	genome.wustl.edu	37	chr19	9073430	9073430	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gtcatgtgggtagatattgtCatgggaggagagtttgaaag	16	2	2	3			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	19	9073430	9073430	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.14016	p.M4672I	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	67	0	0	42	30	41.67	-	-	-	G	9073430	C	G	9073430	3	3	398	1	0	0	0	0	1	0	0	0	10045	826	29	2	29835	2	MUC16	19	9073430	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		9073430	50055553	28	40420										
ZNF699	0	genome.wustl.edu	37	chr19	9408556	9408556	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	tttctcccaagggttcttgcCttcccggtgctctcccataa	7	15	3	0			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	19	9408556	9408556	C	A	SNP	ZNF699	ENST00000308650	human	ensembl	69_37n	-1	known	missense	c.286	p.G96C	0.991	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110	56	0	0	70	9	11.39	-	-	-	A	9408556	C	A	9408556	3	1	398	1	0	0	0	0	1	0	0	0	18197	695	24	4	1654	4	ZNF699	19	9408556	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	335126	9408556	49720427	29	40421										
ZNF880	0	genome.wustl.edu	37	chr19	52888293	52888293	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	aaatcatcacagaatccataCtggagagaaaccttacaaat	5	9	2	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	19	52888293	52888293	C	G	SNP	ZNF880	ENST00000422689	human	ensembl	69_37n	1	known	missense	c.1460	p.T487S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	67	0	0	30	9	23.08	-	-	-	G	52888293	C	G	52888293	3	3	398	1	0	0	0	0	1	0	0	0	18290	565	20	4	1474	4	ZNF880	19	52888293	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	43479737	52888293	6240690	30	40422										
ZNF578	0	genome.wustl.edu	37	chr19	53005128	53005128	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gaggaagcagctcagaagagGaaaggaaaggagccaggcat	16	6	1	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	19	53005128	53005128	G	A	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	silent	c.30	p.R10	0.105	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	138	0	0	65	15	18.75	-	-	-	A	53005128	G	A	53005128	2	1	398	1	0	0	0	0	0	0	0	1	18106	1165	41	2		2	ZNF578	19	53005128	Silent	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	116835	53005128	6123855	31	40423										
ZNF814	0	genome.wustl.edu	37	chr19	58385256	58385256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	cgaggttgcccttttgactgAaagatttcccacattctcca	7	12	1	3			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	19	58385256	58385256	A	G	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.1502	p.F501S	0.482	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	89	0	0	52	13	20	-	-	-	G	58385256	A	G	58385256	3	3	398	1	0	0	0	0	1	0	0	0	18269	246	9	5	1069	5	ZNF814	19	58385256	Missense_Mutation	SNP	A	TCGA-AR-A24S-01A-11D-A167-09	5380128	58385256	743727	32	40424										
ICOSLG	0	genome.wustl.edu	37	chr21	45651313	45651313	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	ctctgtgatcttgtctctctCtccgatgtcatttcctacaa	5	13	5	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	21	45651313	45651313	C	A	SNP	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	nonsense	c.712	p.E238*	0.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	74	0	0	44	26	37.14	-	-	-	A	45651313	C	A	45651313	4	1	398	1	0	0	0	0	0	1	0	0	7541	922	32	2	208	2	ICOSLG	21	45651313	Nonsense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		45651313	2478582	33	40425										
IL3RA	0	genome.wustl.edu	37	chrX	1475125	1475125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	cgttgctagagatattaactCcacccaacatgactgcaaag	7	11	0	2			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	X	1475125	1475125	C	G	SNP	IL3RA	ENST00000331035	human	ensembl	69_37n	1	known	missense	c.628	p.P210A	0.027	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291	54	0	0	48	15	23.81	-	-	-	G	1475125	C	G	1475125	3	3	398	1	0	0	0	0	1	0	0	0	7749	855	30	2	650	2	IL3RA	23	1475125	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09		1475125	153795435	34	40426										
UBA1	0	genome.wustl.edu	37	chrX	47061807	47061807	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gactttgtggtgacggacttCgccaagttttctcgccctgc	11	12	1	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	X	47061807	47061807	C	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.960	p.F320	0.938	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	69	0	0	40	7	14.89	-	-	-	T	47061807	C	T	47061807	2	4	398	1	0	0	0	0	0	0	0	1	16924	883	31	1		1	UBA1	23	47061807	Silent	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	45586682	47061807	108208753	35	40427										
MTMR8	0	genome.wustl.edu	37	chrX	63490847	63490847	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	cttttctagttcatgcacatCtgtctccagcattgctctct	5	13	5	0			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	X	63490847	63490847	C	T	SNP	MTMR8	ENST00000374852	human	ensembl	69_37n	-1	known	missense	c.1588	p.D530N	0.011	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043	75	0	0	62	12	16.22	-	-	-	T	63490847	C	T	63490847	3	4	398	1	0	0	0	0	1	0	0	0	10021	913	32	2	534	2	MTMR8	23	63490847	Missense_Mutation	SNP	C	TCGA-AR-A24S-01A-11D-A167-09	16429040	63490847	91779713	36	40428										
KIF4A	0	genome.wustl.edu	37	chrX	69639610	69639610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gattgagcttctttaatcccGtctgtgccacccccaatagc	7	14	2	1			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	X	69639610	69639610	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.3472	p.V1158I	0.976	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	42	0	0	50	9	15.25	-	-	-	A	69639610	G	A	69639610	3	1	398	1	0	0	0	0	1	0	0	0	8355	1145	40	1	3586	1	KIF4A	23	69639610	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	6148763	69639610	85630950	37	40429										
UPRT	0	genome.wustl.edu	37	chrX	74519659	74519659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	6	0.513936573592011	1.48616600790514	1.8989898989899	1.34046345811052	0.592074592074592	1	0	gtgatgaggagacacaaagaGccaaagtatattatgccaaa	10	6	0	4			TCGA-AR-A24S-01A-11D-A167-09	TCGA-AR-A24S-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aad32a56-5b98-433e-bb6e-48e09a027db6	1385c890-fc86-404f-96f9-90d1bd595b10	X	74519659	74519659	G	A	SNP	UPRT	ENST00000373383	human	ensembl	69_37n	1	known	missense	c.652	p.A218T	1.000	pfam_PRibTrfase	pfam_PRibTrfase	-	no_errors	UPRT	HGNC	ENSG00000094841	55	0	0	39	16	29.09	-	-	-	A	74519659	G	A	74519659	3	1	398	1	0	0	0	0	1	0	0	0	17111	971	34	4	670	4	UPRT	23	74519659	Missense_Mutation	SNP	G	TCGA-AR-A24S-01A-11D-A167-09	4880049	74519659	80750901	38	40430										
NGF	0	genome.wustl.edu	37	chr1	115829179	115829179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	acggggtgaacggagtcgccGctttttaaacagcctggggt	15	9	0	1			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	1	115829179	115829179	G	A	SNP	NGF	ENST00000369512	human	ensembl	69_37n	-1	known	missense	c.238	p.R80W	1.000	pirsf_Nerve_growth_factor-like	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259	22	0	0	14	7	33.33	-	-	-	A	115829179	G	A	115829179	3	1	399	1	0	0	0	0	1	0	0	0	10467	1086	38	1	491	1	NGF	1	115829179	Missense_Mutation	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		115829179	133421442	1	40431										
FAM129A	0	genome.wustl.edu	37	chr1	184764696	184764696	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	ggaacgtggctctccccattCgtatcttcttccatcactgg	8	14	4	0			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	1	184764696	184764696	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	silent	c.2202	p.T734	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	80	0	0	66	30	31.25	-	-	-	T	184764696	C	T	184764696	2	4	399	1	0	0	0	0	0	0	0	1	5476	871	31	1		1	FAM129A	1	184764696	Silent	SNP	C	TCGA-AR-A24T-01A-11D-A167-09	68935517	184764696	64485925	2	40432										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	34	0	0	36	16	30.77	-	-	-	G	178952085	A	G	178952085	3	3	399	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A24T-01A-11D-A167-09		178952085	19070345	3	40433										
LARP7	0	genome.wustl.edu	37	chr4	113568475	113568475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	taaaatgaaaagatccagacCcacatctgagggctctgaca	8	10	2	5			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	4	113568475	113568475	C	T	SNP	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	missense	c.767	p.P256L	0.004	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	45	0	0	52	13	20	-	-	-	T	113568475	C	T	113568475	3	4	399	1	0	0	0	0	1	0	0	0	8687	623	22	4	789	4	LARP7	4	113568475	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		113568475	77585801	4	40434										
DNAH5	0	genome.wustl.edu	37	chr5	13770961	13770961	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	cgtcacgtgggtagaacgtcGgaatctctgaaaataatcaa	10	8	3	2			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	5	13770961	13770961	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	nonsense	c.9502	p.R3168*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	69	0	0	44	18	29.03	-	-	-	A	13770961	G	A	13770961	4	1	399	1	0	0	0	0	0	1	0	0	4640	1124	39	1	4468	1	DNAH5	5	13770961	Nonsense_Mutation	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		13770961	167144299	5	40435										
SLC26A3	0	genome.wustl.edu	37	chr7	107408040	107408040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	ttacctcatatacccgattaCgtaatcctccatttgtattt	3	11	1	0			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	7	107408040	107408040	C	T	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	missense	c.2255	p.R752H	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	72	0	0	45	24	34.29	-	-	-	T	107408040	C	T	107408040	3	4	399	1	0	0	0	0	1	0	0	0	14607	536	19	1	47	1	SLC26A3	7	107408040	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		107408040	51730623	6	40436										
MYOM2	0	genome.wustl.edu	37	chr8	2020585	2020586	+	Frame_Shift_Ins	INS	-	-	A													0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	cgcgcgccgagtggtaccgcINSgatggtgagtaggacacggc							TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	8	2020585	2020586	-	A	INS	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	frame_shift_ins	c.954_955	p.D318fs	0.992:1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	17	0	0	16	6	27.27	-	-	-	A	2020586	-	A	2020585	7	5	399	1	0	1	1	0	0	0	0	0	10164	755	27	0	984	0	MYOM2	8	2020585	Frame_Shift_Ins	INS	-	TCGA-AR-A24T-01A-11D-A167-09		2020585	144343437	7	40437										
MED27	0	genome.wustl.edu	37	chr9	134759459	134759459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	acttaccttctggaatacttGatagttggatttggaccata	8	7	1	1			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	9	134759459	134759459	G	C	SNP	MED27	ENST00000292035	human	ensembl	69_37n	-1	known	missense	c.709	p.Q237E	1.000	pfam_Mediator_Med27	pfam_Mediator_Med27	-	no_errors	MED27	HGNC	ENSG00000160563	51	0	0	35	16	31.37	-	-	-	C	134759459	G	C	134759459	3	2	399	1	0	0	0	0	1	0	0	0	9516	1299	45	2	238	2	MED27	9	134759459	Missense_Mutation	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		134759459	6453972	8	40438										
OR5I1	0	genome.wustl.edu	37	chr11	55703435	55703435	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	gcctccaaggtatgacaagaCaatcaaccgcatacagatgc	8	12	1	3			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	11	55703435	55703435	C	A	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.442	p.V148F	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	38	0	0	17	9	34.62	-	-	-	A	55703435	C	A	55703435	3	1	399	1	0	0	0	0	1	0	0	0	11237	478	17	4	505	4	OR5I1	11	55703435	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		55703435	79303081	9	40439										
ATXN2	0	genome.wustl.edu	37	chr12	111951204	111951204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	gttccccccgagggactggtCcttgctactggaggagtagc	14	12	0	0			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	12	111951204	111951204	C	T	SNP	ATXN2	ENST00000483311	human	ensembl	69_37n	-1	known	missense	c.1757	p.G586E	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN2	HGNC	ENSG00000204842	45	0	0	42	16	27.59	-	-	-	T	111951204	C	T	111951204	3	4	399	1	0	0	0	0	1	0	0	0	1215	854	30	2	2006	2	ATXN2	12	111951204	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		111951204	21900691	10	40440										
CBLN3	0	genome.wustl.edu	37	chr14	24898144	24898144	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	aggcactccccctccagcagGacgggctctgacccctcctg	10	19	1	1			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	14	24898144	24898144	G	T	SNP	CBLN3	ENST00000267406	human	ensembl	69_37n	-1	known	silent	c.117	p.V39	0.863	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	CBLN3	HGNC	ENSG00000139899	11	0	0	11	5	31.25	-	-	-	T	24898144	G	T	24898144	2	4	399	1	0	0	0	0	0	0	0	1	2731	1161	41	2		2	CBLN3	14	24898144	Silent	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		24898144	82451396	11	40441										
CDH1	0	genome.wustl.edu	37	chr16	68857311	68857312	+	Frame_Shift_Ins	INS	-	-	T													0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	ctttctccagcccaagaatcINStatcattttgaagccaaaga							TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	16	68857311	68857312	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1946_1947	p.I650fs	0.016:0.014	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	22	0	0	13	6	31.58	-	-	-	T	68857312	-	T	68857311	7	5	399	1	0	1	1	0	0	0	0	0	3124	913	32	0	1996	0	CDH1	16	68857311	Frame_Shift_Ins	INS	-	TCGA-AR-A24T-01A-11D-A167-09		68857311	21497442	12	40442										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	62	0	0	31	13	29.55	-	-	-	T	7577120	C	T	7577120	3	4	399	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		7577120	73618090	13	40443										
WIZ	0	genome.wustl.edu	37	chr19	15536454	15536454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	gtcgatgggcgaaccattgaCggaccactcggtcacaccca	11	14	1	1			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	19	15536454	15536454	C	T	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.3778	p.V1260I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	19	0	0	12	5	29.41	-	-	-	T	15536454	C	T	15536454	3	4	399	1	0	0	0	0	1	0	0	0	17472	536	19	1	1193	1	WIZ	19	15536454	Missense_Mutation	SNP	C	TCGA-AR-A24T-01A-11D-A167-09		15536454	43592529	14	40444										
FBXO7	0	genome.wustl.edu	37	chr22	32889166	32889166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	tacggatcttccgacttctgGatgttcgttccgtcttgtct	9	11	4	0			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	22	32889166	32889166	G	T	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	missense	c.1042	p.D348Y	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	97	0	0	116	46	28.4	-	-	-	T	32889166	G	T	32889166	3	4	399	1	0	0	0	0	1	0	0	0	5806	1174	41	2	1109	2	FBXO7	22	32889166	Missense_Mutation	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		32889166	18415400	15	40445										
MED12	0	genome.wustl.edu	37	chrX	70352768	70352768	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	1	0.951642479773168	0.885885885885886	7.97297297297297	0	1	1	0	aagggcaggatgaacaacgcGagggactccttacctccctc	11	13	0	1			TCGA-AR-A24T-01A-11D-A167-09	TCGA-AR-A24T-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09991de6-2e8e-476f-987b-98d9a85dac7d	390d8a22-e4e5-4221-87ab-00075d4e80d9	X	70352768	70352768	G	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	nonsense	c.4489	p.E1497*	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	30	0	0	33	12	26.67	-	-	-	T	70352768	G	T	70352768	4	4	399	1	0	0	0	0	0	1	0	0	9499	1059	37	3	4615	3	MED12	23	70352768	Nonsense_Mutation	SNP	G	TCGA-AR-A24T-01A-11D-A167-09		70352768	84917792	16	40446										
FGGY	0	genome.wustl.edu	37	chr1	60073504	60073504	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	gacccgatttttgtaccaggCgtctgggggccttatttctc	11	11	2	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	60073504	60073504	C	T	SNP	FGGY	ENST00000303721	human	ensembl	69_37n	1	known	silent	c.933	p.G311	0.002	pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456	94	0	0	61	15	19.74	-	-	-	T	60073504	C	T	60073504	2	4	400	1	0	0	0	0	0	0	0	1	5917	755	27	1		1	FGGY	1	60073504	Silent	SNP	C	TCGA-AR-A24U-01A-11D-A167-09		60073504	189177117	1	40447										
GSTM3	0	genome.wustl.edu	37	chr1	110279617	110279617	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	taacataagtgctattcattGaaaagagcaaagcaagagcg	9	6	1	3			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	110279617	110279617	G	A	SNP	GSTM3	ENST00000476321	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GSTM3	HGNC	ENSG00000134202	21	0	0	22	7	24.14	-	-	-	A	110279617	G	A	110279617	1	1	400	0	1	0	0	0	0	0	0	0	6890	1305	45	2		2	GSTM3	1	110279617	RNA	SNP	G	TCGA-AR-A24U-01A-11D-A167-09	50206113	110279617	138971004	2	40448										
LCE1C	0	genome.wustl.edu	37	chr1	152777633	152777633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	agagtgctggccactcccccCgccacagcagctggagcccc	11	19	0	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	152777633	152777633	C	T	SNP	LCE1C	ENST00000368768	human	ensembl	69_37n	-1	known	missense	c.322	p.G108R	0.032	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084	22	0	0	26	6	18.75	-	-	-	T	152777633	C	T	152777633	3	4	400	1	0	0	0	0	1	0	0	0	8715	652	23	1	38	1	LCE1C	1	152777633	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	42498016	152777633	96472988	3	40449										
UGP2	0	genome.wustl.edu	37	chr2	64117287	64117287	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	atcacctcacagtttcaggaGatgtgacatttggaaaaaat	8	7	3	2			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	64117287	64117287	G	T	SNP	UGP2	ENST00000337130	human	ensembl	69_37n	1	known	missense	c.1387	p.D463Y	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764	78	0	0	32	5	13.16	-	-	-	T	64117287	G	T	64117287	3	4	400	1	0	0	0	0	1	0	0	0	17040	942	33	2	1421	2	UGP2	2	64117287	Missense_Mutation	SNP	G	TCGA-AR-A24U-01A-11D-A167-09		64117287	179082086	4	40450										
ABCB11	0	genome.wustl.edu	37	chr2	169780189	169780189	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	taggctcctttttgggccatCagttcttcatgggtcccctt	9	12	3	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	169780189	169780189	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	silent	c.3909	p.L1303	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	115	0	0	122	16	11.59	-	-	-	T	169780189	C	T	169780189	2	4	400	1	0	0	0	0	0	0	0	1	42	813	29	2		2	ABCB11	2	169780189	Silent	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	105662902	169780189	73419184	5	40451										
TTN	0	genome.wustl.edu	37	chr2	179438786	179438786	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	cacctttatctttggtgcctCaacatcatccctgcaagtga	6	13	3	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	179438786	179438786	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.64369	p.E21457Q	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	64	0	0	45	7	13.21	-	-	-	G	179438786	C	G	179438786	3	3	400	1	0	0	0	0	1	0	0	0	16832	835	29	2	36054	2	TTN	2	179438786	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	9658597	179438786	63760587	6	40452										
ABI3BP	0	genome.wustl.edu	37	chr3	100569509	100569509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	tgttaaaaacattacccagtGttgcccttggctgttcaaga	8	9	1	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	100569509	100569509	G	A	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.1295	p.T432I	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	79	0	0	93	11	10.58	-	-	-	A	100569509	G	A	100569509	3	1	400	1	0	0	0	0	1	0	0	0	91	1377	48	4	2020	4	ABI3BP	3	100569509	Missense_Mutation	SNP	G	TCGA-AR-A24U-01A-11D-A167-09		100569509	97452921	7	40453										
PDCD10	0	genome.wustl.edu	37	chr3	167437925	167437925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	gtctcagcttcattcttcatCtcttccattgtcatcctcat	3	14	7	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	167437925	167437925	C	G	SNP	PDCD10	ENST00000392750	human	ensembl	69_37n	-1	known	missense	c.21	p.E7D	1.000	NULL	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209	120	0	0	95	13	12.04	-	-	-	G	167437925	C	G	167437925	3	3	400	1	0	0	0	0	1	0	0	0	11689	912	32	2	645	2	PDCD10	3	167437925	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	66868416	167437925	30584505	8	40454										
TM4SF19	0	genome.wustl.edu	37	chr3	196054386	196054386	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	ggccccagcagcaaacagggCtgcagtcccaaggctcagtc	12	15	1	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	196054386	196054386	C	A	SNP	TM4SF19	ENST00000273695	human	ensembl	69_37n	-1	known	missense	c.76	p.A26S	0.828	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF19	HGNC	ENSG00000145107	21	0	0	13	8	38.1	-	-	-	A	196054386	C	A	196054386	3	1	400	1	0	0	0	0	1	0	0	0	16063	797	28	4	569	4	TM4SF19	3	196054386	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	28616461	196054386	1968044	9	40455										
DAXX	0	genome.wustl.edu	37	chr6	33288266	33288266	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	cctcacttttgtcttgcaacAttgcatatttggagatgacc	7	10	2	2			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	6	33288266	33288266	A	C	SNP	DAXX	ENST00000266000	human	ensembl	69_37n	-1	known	missense	c.1142	p.M381R	0.967	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	36	0	0	36	7	16.28	-	-	-	C	33288266	A	C	33288266	3	2	400	1	0	0	0	0	1	0	0	0	4275	217	8	5	1100	5	DAXX	6	33288266	Missense_Mutation	SNP	A	TCGA-AR-A24U-01A-11D-A167-09		33288266	137826801	10	40456										
TNPO3	0	genome.wustl.edu	37	chr7	128658078	128658078	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	ttagcaatgagtcccgtaaaGaggcatgagagtctgtgggg	15	6	1	3			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	7	128658078	128658078	G	C	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.254	p.S85C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	65	0	0	86	13	13	-	-	-	C	128658078	G	C	128658078	3	2	400	1	0	0	0	0	1	0	0	0	16432	942	33	2	2601	2	TNPO3	7	128658078	Missense_Mutation	SNP	G	TCGA-AR-A24U-01A-11D-A167-09		128658078	30480585	11	40457										
PRKAR1A	0	genome.wustl.edu	37	chr17	66526498	66526498	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	tgaagtgcgttaagctggacCgacctagatttgaacgtgtt	12	7	0	3			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	17	66526498	66526498	C	T	SNP	PRKAR1A	ENST00000358598	human	ensembl	69_37n	1	known	nonsense	c.1054	p.R352*	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946	76	0	0	71	12	14.46	-	-	-	T	66526498	C	T	66526498	4	4	400	1	0	0	0	0	0	1	0	0	12584	644	23	1	1092	1	PRKAR1A	17	66526498	Nonsense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09		66526498	14668712	12	40458										
TNFRSF11A	0	genome.wustl.edu	37	chr18	60036105	60036105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	gtgtaggaggtggtccctacGcacaaggcgaagatgccagg	16	9	0	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	18	60036105	60036105	G	A	SNP	TNFRSF11A	ENST00000586569	human	ensembl	69_37n	1	known	missense	c.955	p.A319T	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655	46	0	0	36	13	26.53	-	-	-	A	60036105	G	A	60036105	3	1	400	1	0	0	0	0	1	0	0	0	16379	1087	38	1	989	1	TNFRSF11A	18	60036105	Missense_Mutation	SNP	G	TCGA-AR-A24U-01A-11D-A167-09		60036105	18041143	13	40459										
LIPE	0	genome.wustl.edu	37	chr19	42911525	42911525	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	ccgccgtggaagtgcactatCagggaccgcgagcggggtgc	17	12	1	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	19	42911525	42911525	C	T	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	silent	c.1938	p.L646	0.574	pfam_Steryl_acetyl_hydrolase	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	24	0	0	24	9	27.27	-	-	-	T	42911525	C	T	42911525	2	4	400	1	0	0	0	0	0	0	0	1	8877	813	29	2		2	LIPE	19	42911525	Silent	SNP	C	TCGA-AR-A24U-01A-11D-A167-09		42911525	16217458	14	40460										
NCOA5	0	genome.wustl.edu	37	chr20	44693794	44693794	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	ggcttgtgacagtgacacttCtgtgttaaggaagatcaagt	12	6	2	3			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	20	44693794	44693794	C	G	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.703	p.E235Q	1.000	superfamily_Anticodon-bd	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	61	0	0	70	10	12.5	-	-	-	G	44693794	C	G	44693794	3	3	400	1	0	0	0	0	1	0	0	0	10304	922	32	2	1048	2	NCOA5	20	44693794	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09		44693794	18331726	15	40461										
COL20A1	0	genome.wustl.edu	37	chr20	61939943	61939943	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	aacctgcagccggcggctggCctccgtccagaggcagccaa	13	16	0	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	20	61939943	61939943	C	G	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	silent	c.825	p.G275	0.006	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	9	0	0	10	4	28.57	-	-	-	G	61939943	C	G	61939943	2	3	400	1	0	0	0	0	0	0	0	1	3709	726	26	4		4	COL20A1	20	61939943	Silent	SNP	C	TCGA-AR-A24U-01A-11D-A167-09	17246149	61939943	1085577	16	40462										
NCF4	0	genome.wustl.edu	37	chr22	37266473	37266473	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	acagagcctgctcagcctgcCggtctgggtgctgatggatg	15	11	2	2			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	22	37266473	37266473	C	G	SNP	NCF4	ENST00000397147	human	ensembl	69_37n	1	known	missense	c.359	p.P120R	0.994	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF4	HGNC	ENSG00000100365	49	0	0	32	11	25.58	-	-	-	G	37266473	C	G	37266473	3	3	400	1	0	0	0	0	1	0	0	0	10290	652	23	3	377	3	NCF4	22	37266473	Missense_Mutation	SNP	C	TCGA-AR-A24U-01A-11D-A167-09		37266473	14038093	17	40463										
KLHL4	0	genome.wustl.edu	37	chrX	86772968	86772968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	cgctggaggtggtttagtcaTccttttcaaggttccaccaa	10	10	2	0			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	86772968	86772968	T	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.72	p.H24Q	1.000	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	49	0	0	32	5	13.51	-	-	-	A	86772968	T	A	86772968	3	1	400	1	0	0	0	0	1	0	0	0	8444	1432	50	5	74	5	KLHL4	23	86772968	Missense_Mutation	SNP	T	TCGA-AR-A24U-01A-11D-A167-09		86772968	68497592	18	40464										
MAGEA12	0	genome.wustl.edu	37	chrX	151900087	151900087	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.421052631578947	8	0.00268103558281425	3.98545454545455	5.33766233766234	2.80227272727273	0.637186343068696	1	6	agcttcctgggatgcgcaaaGacactgtcctccctcccatc	8	16	0	1			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	151900087	151900087	G	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.714	p.V238	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	98	0	0	90	13	12.62	-	-	-	C	151900087	G	C	151900087	2	2	400	1	0	0	0	0	0	0	0	1	9233	929	33	2		2	MAGEA12	23	151900087	Silent	SNP	G	TCGA-AR-A24U-01A-11D-A167-09	65127119	151900087	3370473	19	40465										
TFB2M	0	genome.wustl.edu	37	chr1	246714526	246714526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tttactcaccatgtgcagaaCcttaatctcacaagctaatt	4	11	2	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	1	246714526	246714526	C	T	SNP	TFB2M	ENST00000366514	human	ensembl	69_37n	-1	known	missense	c.784	p.V262I	0.997	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851	93	0	0	34	19	35.85	-	-	-	T	246714526	C	T	246714526	3	4	401	1	0	0	0	0	1	0	0	0	15889	507	18	4	422	4	TFB2M	1	246714526	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		246714526	2536095	1	40466										
NMI	0	genome.wustl.edu	37	chr2	152139454	152139454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tgttgtgtgtcatctttatcAgcttccatgatcccctaata	6	10	3	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	2	152139454	152139454	A	G	SNP	NMI	ENST00000243346	human	ensembl	69_37n	-1	known	silent	c.9	p.A3	0.000	NULL	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	NMI	HGNC	ENSG00000123609	106	0	0	33	28	45.9	-	-	-	G	152139454	A	G	152139454	2	3	401	1	0	0	0	0	0	0	0	1	10569	175	7	5		5	NMI	2	152139454	Silent	SNP	A	TCGA-AR-A24V-01A-21D-A167-09		152139454	91059919	2	40467										
ALS2CR11	0	genome.wustl.edu	37	chr2	202446931	202446931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	attccgcttatcatcataacGtctgggaacctcaatatcaa	5	11	5	0			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	2	202446931	202446931	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	missense	c.526	p.R176C	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	56	0	0	37	7	15.91	-	-	-	A	202446931	G	A	202446931	3	1	401	1	0	0	0	0	1	0	0	0	552	1145	40	1	5131	1	ALS2CR11	2	202446931	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09	50307477	202446931	40752442	3	40468										
SRGAP3	0	genome.wustl.edu	37	chr3	9068659	9068659	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	atgcagctctcgactacaagCggtatagcttgtcctgaatc	9	11	1	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	3	9068659	9068659	C	T	SNP	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	silent	c.1560	p.P520	0.017	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	55	0	0	24	8	25	-	-	-	T	9068659	C	T	9068659	2	4	401	1	0	0	0	0	0	0	0	1	15238	755	27	1		1	SRGAP3	3	9068659	Silent	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		9068659	188953771	4	40469										
FRYL	0	genome.wustl.edu	37	chr4	48591834	48591834	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	ttggtctcccaacttctttgTccaaatgtctgaggatgcta	8	10	3	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	4	48591834	48591834	T	A	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.1568	p.D523V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	97	0	0	29	22	43.14	-	-	-	A	48591834	T	A	48591834	3	1	401	1	0	0	0	0	1	0	0	0	6113	1667	58	5	7661	5	FRYL	4	48591834	Missense_Mutation	SNP	T	TCGA-AR-A24V-01A-21D-A167-09		48591834	142562442	5	40470										
HEXB	0	genome.wustl.edu	37	chr5	74014695	74014695	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	actcagtagagtcacagcatCtggcttccctgtaatccttt	7	12	3	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	5	74014695	74014695	C	G	SNP	HEXB	ENST00000261416	human	ensembl	69_37n	1	known	missense	c.1316	p.S439C	0.964	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXB	HGNC	ENSG00000049860	99	0	0	101	20	16.53	-	-	-	G	74014695	C	G	74014695	3	3	401	1	0	0	0	0	1	0	0	0	7125	913	32	2	1358	2	HEXB	5	74014695	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		74014695	106900565	6	40471										
AMPH	0	genome.wustl.edu	37	chr7	38471799	38471799	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	agtggcttaccgtccataggTcccagggcaatgtctgaaag	12	10	1	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	7	38471799	38471799	T	A	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	missense	c.1148	p.D383V	1.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	96	0	0	61	22	26.51	-	-	-	A	38471799	T	A	38471799	3	1	401	1	0	0	0	0	1	0	0	0	588	1667	58	5	975	5	AMPH	7	38471799	Missense_Mutation	SNP	T	TCGA-AR-A24V-01A-21D-A167-09		38471799	120666864	7	40472										
MGAM	0	genome.wustl.edu	37	chr7	141794262	141794262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	acattggctgggagacaacaCagccgcgtgggatcagctga	14	10	1	2			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	7	141794262	141794262	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.7274	p.T2425I	0.343	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	42	0	0	28	25	47.17	-	-	-	T	141794262	C	T	141794262	3	4	401	1	0	0	0	0	1	0	0	0	9612	493	17	4		4	MGAM	7	141794262	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09	103322463	141794262	17344401	8	40473										
SNTG1	0	genome.wustl.edu	37	chr8	51503450	51503450	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tcattgcagattaaaaaaatCaacagaaactttcctgtaaa	4	7	2	2			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	8	51503450	51503450	C	A	SNP	SNTG1	ENST00000524004	human	ensembl	69_37n	1	known	missense	c.142	p.Q48K	1.000	NULL	pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNTG1	HGNC	ENSG00000147481	79	0	0	57	14	19.44	-	-	-	A	51503450	C	A	51503450	3	1	401	1	0	0	0	0	1	0	0	0	14963	816	29	2	864	2	SNTG1	8	51503450	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		51503450	94860572	9	40474										
CYP7B1	0	genome.wustl.edu	37	chr8	65528612	65528612	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	agctggggttcaaaaacttgTtttagattctgcatcatgct	9	7	3	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	8	65528612	65528612	T	C	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	silent	c.486	p.K162	0.005	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	50	0	0	52	7	11.86	-	-	-	C	65528612	T	C	65528612	2	2	401	1	0	0	0	0	0	0	0	1	4228	1722	60	5		5	CYP7B1	8	65528612	Silent	SNP	T	TCGA-AR-A24V-01A-21D-A167-09	14025162	65528612	80835410	10	40475										
OR4A5	0	genome.wustl.edu	37	chr11	51412226	51412226	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	ggcaggcaaggaagaaatacAttggggaacccaaggaaggg	16	6	0	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	11	51412226	51412226	A	T	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	missense	c.170	p.M57K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	56	0	0	34	20	35.71	-	-	-	T	51412226	A	T	51412226	3	4	401	1	0	0	0	0	1	0	0	0	11116	217	8	5	781	5	OR4A5	11	51412226	Missense_Mutation	SNP	A	TCGA-AR-A24V-01A-21D-A167-09		51412226	83594290	11	40476										
RBM14	0	genome.wustl.edu	37	chr11	66393101	66393101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tacccgcctctccccaccccGggccagctacgacgatccct	7	22	1	0			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	11	66393101	66393101	G	A	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.1754	p.R585Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	20	0	0	7	21	75	-	-	-	A	66393101	G	A	66393101	3	1	401	1	0	0	0	0	1	0	0	0	13198	1116	39	1	1760	1	RBM14	11	66393101	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09	14980875	66393101	68613415	12	40477										
SLCO1C1	0	genome.wustl.edu	37	chr12	20852607	20852607	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	aaacagaatatccctcctcaGaagaaaagcaaccatgctgt	6	11	1	3			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	12	20852607	20852607	G	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.97	p.E33K	0.278	superfamily_MFS_dom_general_subst_transpt	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	40	0	0	69	10	12.66	-	-	-	A	20852607	G	A	20852607	3	1	401	1	0	0	0	0	1	0	0	0	14814	943	33	2	99	2	SLCO1C1	12	20852607	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09		20852607	112999288	13	40478										
GCN1L1	0	genome.wustl.edu	37	chr12	120597695	120597695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	gaaggggttcttgatcctggGagcagccaggggagacttca	16	8	2	2			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	12	120597695	120597695	G	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.2683	p.P895T	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	48	0	0	31	4	11.11	-	-	-	T	120597695	G	T	120597695	3	4	401	1	0	0	0	0	1	0	0	0	6349	1174	41	2	5472	2	GCN1L1	12	120597695	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09	99745088	120597695	13254200	14	40479										
GTF3C1	0	genome.wustl.edu	37	chr16	27492404	27492404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	cccagaaacggcttacctggCgaacagctcctggagtgtgt	12	12	0	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	16	27492404	27492404	C	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.4192	p.A1398S	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	54	0	0	33	18	34.62	-	-	-	A	27492404	C	A	27492404	3	1	401	1	0	0	0	0	1	0	0	0	6923	768	27	3	2181	3	GTF3C1	16	27492404	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		27492404	62862349	15	40480										
BCMO1	0	genome.wustl.edu	37	chr16	81314502	81314502	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tttaatcaaagtggcatctaCaacagccacggccctgaagg	9	11	2	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	16	81314502	81314502	C	G	SNP	BCMO1	ENST00000258168	human	ensembl	69_37n	1	known	missense	c.1142	p.T381R	0.970	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	58	0	0	16	23	58.97	-	-	-	G	81314502	C	G	81314502	3	3	401	1	0	0	0	0	1	0	0	0	1388	478	17	4	1172	4	BCMO1	16	81314502	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09	53822098	81314502	9040251	16	40481										
TRPV3	0	genome.wustl.edu	37	chr17	3435985	3435985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	tcttggcggccagctgcagcGgcgtgaggccatcgttgttg	16	11	1	1			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	17	3435985	3435985	G	A	SNP	TRPV3	ENST00000301365	human	ensembl	69_37n	-1	known	missense	c.1031	p.P344L	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	27	0	0	8	9	52.94	-	-	-	A	3435985	G	A	3435985	3	1	401	1	0	0	0	0	1	0	0	0	16693	1116	39	1	1385	1	TRPV3	17	3435985	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09		3435985	77759225	17	40482										
ZBTB4	0	genome.wustl.edu	37	chr17	7366623	7366623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	ccttccagcccgtggattccGgcccttggcctcctccgtgg	11	18	0	0			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	17	7366623	7366623	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	69_37n	-1	known	missense	c.1678	p.R560W	0.995	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	26	0	0	8	18	66.67	-	-	-	A	7366623	G	A	7366623	3	1	401	1	0	0	0	0	1	0	0	0	17637	1115	39	1	1367	1	ZBTB4	17	7366623	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09	3930638	7366623	73828587	18	40483										
SCN4A	0	genome.wustl.edu	37	chr17	62019253	62019253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	gtccggatgcccttggccccGcggatcagccgcaggacacg	14	16	1	0			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	17	62019253	62019253	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.4389	p.R1463	0.212	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	40	0	0	68	13	16.05	-	-	-	A	62019253	G	A	62019253	2	1	401	1	0	0	0	0	0	0	0	1	14008	1074	38	1		1	SCN4A	17	62019253	Silent	SNP	G	TCGA-AR-A24V-01A-21D-A167-09	54652630	62019253	19175957	19	40484										
CACNG8	0	genome.wustl.edu	37	chr19	54481413	54481413	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	cctccagggttgaaaagaggCgtctgcgtgaagatcaatca	12	9	3	4			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	19	54481413	54481413	C	T	SNP	CACNG8	ENST00000270458	human	ensembl	69_37n	1	known	silent	c.297	p.G99	0.998	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g8su,prints_Claudin	-	no_errors	CACNG8	HGNC	ENSG00000142408	16	0	0	14	6	30	-	-	-	T	54481413	C	T	54481413	2	4	401	1	0	0	0	0	0	0	0	1	2588	755	27	1		1	CACNG8	19	54481413	Silent	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		54481413	4647570	20	40485										
PKDREJ	0	genome.wustl.edu	37	chr22	46657914	46657914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	cgctgtcctagagtccttccGaatcaccattctgaagaaat	7	12	2	3			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	22	46657914	46657914	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.1306	p.R436W	0.013	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	52	0	0	28	9	24.32	-	-	-	A	46657914	G	A	46657914	3	1	401	1	0	0	0	0	1	0	0	0	12044	1057	37	1	5459	1	PKDREJ	22	46657914	Missense_Mutation	SNP	G	TCGA-AR-A24V-01A-21D-A167-09		46657914	4646652	21	40486										
ZDHHC9	0	genome.wustl.edu	37	chrX	128948763	128948763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	2	0.904872247913239	0.989339019189765	3.46268656716418	0.577114427860697	1	1	0	cacccaggggcagtgatggtCgaagcgctctgtgggagaaa	16	9	1	2			TCGA-AR-A24V-01A-21D-A167-09	TCGA-AR-A24V-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb77af66-bb8f-4590-9be8-5f729373c555	001b2ef0-526e-46f5-8e76-f315023c070c	X	128948763	128948763	C	T	SNP	ZDHHC9	ENST00000357166	human	ensembl	69_37n	-1	known	missense	c.496	p.D166N	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC9	HGNC	ENSG00000188706	51	0	0	30	14	31.82	-	-	-	T	128948763	C	T	128948763	3	4	401	1	0	0	0	0	1	0	0	0	17718	884	31	1	622	1	ZDHHC9	23	128948763	Missense_Mutation	SNP	C	TCGA-AR-A24V-01A-21D-A167-09		128948763	26321797	22	40487										
ATP13A4	0	genome.wustl.edu	37	chr3	193174938	193174938	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggattgcaattccttccactGggacctggttgagggatggg	15	8	0	1			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	3	193174938	193174938	G	A	SNP	ATP13A4	ENST00000428352	human	ensembl	69_37n	-1	known	nonsense	c.685	p.Q229*	0.989	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP13A4	HGNC	ENSG00000127249	60	0	0	46	19	29.23	-	-	-	A	193174938	G	A	193174938	4	1	402	1	0	0	0	0	0	1	0	0	1130	1348	47	4	1884	4	ATP13A4	3	193174938	Nonsense_Mutation	SNP	G	TCGA-AR-A24W-01A-11D-A17G-09		193174938	4847492	1	40488										
ADCYAP1R1	0	genome.wustl.edu	37	chr7	31146206	31146206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acccgtctctggccagcagtGgggtgaatgggggcacccag	16	12	1	1			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	7	31146206	31146206	G	A	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	1	known	missense	c.1315	p.G439R	1.000	prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	53	0	0	86	14	14	-	-	-	A	31146206	G	A	31146206	3	1	402	1	0	0	0	0	1	0	0	0	303	1348	47	4	1373	4	ADCYAP1R1	7	31146206	Missense_Mutation	SNP	G	TCGA-AR-A24W-01A-11D-A17G-09		31146206	127992457	2	40489										
BNC2	0	genome.wustl.edu	37	chr9	16552596	16552596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gtgcagtatgtgcagtacctCctcttgcttcaggacgctga	11	11	2	1			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	9	16552596	16552596	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.601	p.E201K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	36	0	0	42	12	22.22	-	-	-	T	16552596	C	T	16552596	3	4	402	1	0	0	0	0	1	0	0	0	1480	864	30	2	2710	2	BNC2	9	16552596	Missense_Mutation	SNP	C	TCGA-AR-A24W-01A-11D-A17G-09		16552596	124660835	3	40490										
ADCY7	0	genome.wustl.edu	37	chr16	50346035	50346035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaccatggagaacgtgaaccGccttcttctggagaacgtcc	11	12	2	3			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	16	50346035	50346035	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.2537	p.R846H	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	51	0	0	50	13	19.7	-	-	-	A	50346035	G	A	50346035	3	1	402	1	0	0	0	0	1	0	0	0	299	1087	38	1	2615	1	ADCY7	16	50346035	Missense_Mutation	SNP	G	TCGA-AR-A24W-01A-11D-A17G-09		50346035	40008718	4	40491										
PRR12	0	genome.wustl.edu	37	chr19	50098208	50098208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tgccctcttcactgggcttcGagcgcctggcagggggcggt	16	13	2	0			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	19	50098208	50098208	G	A	SNP	PRR12	ENST00000418929	human	ensembl	69_37n	1	known	missense	c.616	p.E206K	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	24	0	0	16	7	30.43	-	-	-	A	50098208	G	A	50098208	3	1	402	1	0	0	0	0	1	0	0	0	12665	1059	37	1	630	1	PRR12	19	50098208	Missense_Mutation	SNP	G	TCGA-AR-A24W-01A-11D-A17G-09		50098208	9030775	5	40492										
KIAA0754	0	genome.wustl.edu	37	chr1	39878515	39878515	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcccagaggagggtacctcaAttgctgcagtgcctgcccca	12	14	1	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	39878515	39878515	A	G	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.2170	p.I724V	0.000	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	34	0	0	25	13	34.21	-	-	-	G	39878515	A	G	39878515	3	3	403	1	0	0	0	0	1	0	0	0	8244	101	4	5	2580	5	KIAA0754	1	39878515	Missense_Mutation	SNP	A	TCGA-AR-A24X-01A-11D-A167-09		39878515	209372106	1	40493										
AMY2A	0	genome.wustl.edu	37	chr1	104166496	104166496	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccctacttaaggatgttaaTgattgggttgggccaccaaa	10	9	0	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	104166496	104166496	T	C	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	1	known	silent	c.1110	p.N370	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	60	0	0	45	6	11.76	-	-	-	C	104166496	T	C	104166496	2	2	403	1	0	0	0	0	0	0	0	1	594	1461	51	5		5	AMY2A	1	104166496	Silent	SNP	T	TCGA-AR-A24X-01A-11D-A167-09	64287981	104166496	145084125	2	40494										
ACPP	0	genome.wustl.edu	37	chr3	132047117	132047117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	acatctactttcaggtgtttCggcatggagaccgaagtccc	10	11	2	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	132047117	132047117	C	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.127	p.R43W	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	20	0	0	17	7	29.17	-	-	-	T	132047117	C	T	132047117	3	4	403	1	0	0	0	0	1	0	0	0	167	875	31	1	133	1	ACPP	3	132047117	Missense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09		132047117	65975313	3	40495										
CARD6	0	genome.wustl.edu	37	chr5	40841761	40841761	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagctgccatttgcggcttaAggcatggtaagttgactttg	12	8	0	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	40841761	40841761	A	C	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	silent	c.277	p.R93	0.003	superfamily_DEATH-like	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	63	0	0	48	23	32.39	-	-	-	C	40841761	A	C	40841761	2	2	403	1	0	0	0	0	0	0	0	1	2675	63	3	5		5	CARD6	5	40841761	Silent	SNP	A	TCGA-AR-A24X-01A-11D-A167-09		40841761	140073499	4	40496										
HMGCS1	0	genome.wustl.edu	37	chr5	43294939	43294939	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttctccacatctctatcaaaGtaggtgtcttctaatttaac	4	10	5	0			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	43294939	43294939	G	T	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	nonsense	c.930	p.Y310*	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	75	0	0	58	9	13.43	-	-	-	T	43294939	G	T	43294939	4	4	403	1	0	0	0	0	0	1	0	0	7283	1024	36	4	652	4	HMGCS1	5	43294939	Nonsense_Mutation	SNP	G	TCGA-AR-A24X-01A-11D-A167-09	2453178	43294939	137620321	5	40497										
GPR116	0	genome.wustl.edu	37	chr6	46826226	46826226	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgaccgagatggcaagtggGcagccatagccaagacagaa	13	9	0	4			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	6	46826226	46826226	G	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.3414	p.C1138	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	24	0	0	14	7	33.33	-	-	-	A	46826226	G	A	46826226	2	1	403	1	0	0	0	0	0	0	0	1	6683	1195	42	4		4	GPR116	6	46826226	Silent	SNP	G	TCGA-AR-A24X-01A-11D-A167-09		46826226	124288841	6	40498										
FAM188B	0	genome.wustl.edu	37	chr7	30825399	30825399	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atggagatgtacttggtaatTttgtatcatctaaaaggccc	9	6	2	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	30825399	30825399	T	A	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	missense	c.454	p.F152I	0.442	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	54	0	0	39	22	36.07	-	-	-	A	30825399	T	A	30825399	3	1	403	1	0	0	0	0	1	0	0	0	5556	1841	64	5	468	5	FAM188B	7	30825399	Missense_Mutation	SNP	T	TCGA-AR-A24X-01A-11D-A167-09		30825399	128313264	7	40499										
POLR2J	0	genome.wustl.edu	37	chr7	102116678	102116678	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tctttgttgatggtgaataaAcaggcattgggtaccttggt	12	5	1	2			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	102116678	102116678	A	G	SNP	POLR2J	ENST00000393794	human	ensembl	69_37n	-1	known	silent	c.93	p.C31	0.723	superfamily_DNA-dir_RNA_pol_RBP11-like	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	-	no_errors	POLR2J	HGNC	ENSG00000005075	51	0	0	34	4	10.53	-	-	-	G	102116678	A	G	102116678	2	3	403	1	0	0	0	0	0	0	0	1	12297	41	2	5		5	POLR2J	7	102116678	Silent	SNP	A	TCGA-AR-A24X-01A-11D-A167-09	71291279	102116678	57021985	8	40500										
B4GALT1	0	genome.wustl.edu	37	chr9	33135286	33135286	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctcctgccggttgcggaaTggaatgatgatggccacctt	13	10	0	2			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	9	33135286	33135286	T	C	SNP	B4GALT1	ENST00000379731	human	ensembl	69_37n	-1	known	silent	c.549	p.P183	0.990	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT1	HGNC	ENSG00000086062	55	0	0	34	12	26.09	-	-	-	C	33135286	T	C	33135286	2	2	403	1	0	0	0	0	0	0	0	1	1274	1451	51	5		5	B4GALT1	9	33135286	Silent	SNP	T	TCGA-AR-A24X-01A-11D-A167-09		33135286	108078145	9	40501										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0	0	1	0	NA	0	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	38	0	0	26	5	16.13	-	-	-	-	8111434	CA	-	8111433	8	5	403	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-AR-A24X-01A-11D-A167-09		8111433	127423314	10	40502										
MUC5B	0	genome.wustl.edu	37	chr11	1251759	1251759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcaccgtgctggctgagctgCggaagtgcggcctgacggac	16	12	1	2			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	11	1251759	1251759	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.1408	p.R470W	0.980	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0	13	6	31.58	-	-	-	T	1251759	C	T	1251759	3	4	403	1	0	0	0	0	1	0	0	0	10051	759	27	1	1454	1	MUC5B	11	1251759	Missense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09		1251759	133754757	11	40503										
RBM19	0	genome.wustl.edu	37	chr12	114395756	114395756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cttcactttcctcttcctccGaggaagaggacgacccagcc	8	16	2	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	114395756	114395756	G	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.671	p.S224L	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	41	0	0	33	14	29.79	-	-	-	A	114395756	G	A	114395756	3	1	403	1	0	0	0	0	1	0	0	0	13204	1059	37	1	2287	1	RBM19	12	114395756	Missense_Mutation	SNP	G	TCGA-AR-A24X-01A-11D-A167-09		114395756	19456139	12	40504										
EP400	0	genome.wustl.edu	37	chr12	132466866	132466866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agaggcccagacacagctccAaatcccggtgaagactcagc	10	14	1	4			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	132466866	132466866	A	G	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.1880	p.Q627R	0.996	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	33	0	0	15	8	33.33	-	-	-	G	132466866	A	G	132466866	3	3	403	1	0	0	0	0	1	0	0	0	5186	130	5	5	1783	5	EP400	12	132466866	Missense_Mutation	SNP	A	TCGA-AR-A24X-01A-11D-A167-09	18071110	132466866	1385029	13	40505										
SAMD4A	0	genome.wustl.edu	37	chr14	55251070	55251070	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgttccaggttcccaagttcAcagtggactgtgtttaacag	10	9	1	0			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	14	55251070	55251070	A	G	SNP	SAMD4A	ENST00000555192	human	ensembl	69_37n	1	novel	missense	c.830	p.H277R	0.000	NULL	NULL	-	no_errors	SAMD4A	HGNC	ENSG00000020577	49	0	0	46	22	32.35	-	-	-	G	55251070	A	G	55251070	3	3	403	1	0	0	0	0	1	0	0	0	13907	159	6	5	2096	5	SAMD4A	14	55251070	Missense_Mutation	SNP	A	TCGA-AR-A24X-01A-11D-A167-09		55251070	52098470	14	40506										
PRMT7	0	genome.wustl.edu	37	chr16	68379634	68379634	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccacaagaggagcctgtggtGcagggctcagcgctctatct	13	12	3	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68379634	68379634	G	T	SNP	PRMT7	ENST00000339507	human	ensembl	69_37n	1	known	silent	c.984	p.V328	0.000	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	21	0	0	7	7	50	-	-	-	T	68379634	G	T	68379634	2	4	403	1	0	0	0	0	0	0	0	1	12622	1306	46	4		4	PRMT7	16	68379634	Silent	SNP	G	TCGA-AR-A24X-01A-11D-A167-09		68379634	21975119	15	40507										
CDH1	0	genome.wustl.edu	37	chr16	68862076	68862076	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgtctcccccaccatcccaGttctgattctgctgctcttg	6	17	4	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68862076	68862076	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.2165-1	e14-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	74	0	0	27	23	46	-	-	-	T	68862076	G	T	68862076	5	4	403	1	0	0	0	0	0	0	1	0	3124	1043	36	4	2218	4	CDH1	16	68862076	Splice_Site	SNP	G	TCGA-AR-A24X-01A-11D-A167-09	482442	68862076	21492677	16	40508										
CRK	0	genome.wustl.edu	37	chr17	1340206	1340206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actgctcttcaggcttgtccCggattctcaagatgtctcct	8	13	4	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	17	1340206	1340206	C	T	SNP	CRK	ENST00000300574	human	ensembl	69_37n	-1	known	missense	c.485	p.R162Q	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRK	HGNC	ENSG00000167193	52	0	0	22	20	47.62	-	-	-	T	1340206	C	T	1340206	3	4	403	1	0	0	0	0	1	0	0	0	3914	652	23	1	437	1	CRK	17	1340206	Missense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09		1340206	79855004	17	40509										
MEGF8	0	genome.wustl.edu	37	chr19	42875614	42875614	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gcagctcccccagtgaccgtCgagactgctacaagtaccag	10	15	0	2			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	42875614	42875614	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	nonsense	c.7249	p.R2417*	1.000	smart_EGF-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	24	0	0	14	9	39.13	-	-	-	T	42875614	C	T	42875614	4	4	403	1	0	0	0	0	0	1	0	0	9534	876	31	1	7206	1	MEGF8	19	42875614	Nonsense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09		42875614	16253369	18	40510										
CCDC114	0	genome.wustl.edu	37	chr19	48821779	48821779	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttgacctggttctgggctgcGctgatctgcacctggagatc	13	11	2	3			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	48821779	48821779	G	A	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	silent	c.114	p.S38	0.000	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	20	0	0	17	13	43.33	-	-	-	A	48821779	G	A	48821779	2	1	403	1	0	0	0	0	0	0	0	1	2776	1078	38	1		1	CCDC114	19	48821779	Silent	SNP	G	TCGA-AR-A24X-01A-11D-A167-09	5946165	48821779	10307204	19	40511										
LRRC4B	0	genome.wustl.edu	37	chr19	51021711	51021711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgacgttggtgaagttaagcGtgccgtcatgcaggacggag	16	7	1	2			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	51021711	51021711	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.1259	p.T420M	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	19	0	0	11	10	47.62	-	-	-	A	51021711	G	A	51021711	3	1	403	1	0	0	0	0	1	0	0	0	9073	1145	40	1	886	1	LRRC4B	19	51021711	Missense_Mutation	SNP	G	TCGA-AR-A24X-01A-11D-A167-09	2199932	51021711	8107272	20	40512										
HSCB	0	genome.wustl.edu	37	chr22	29141935	29141935	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atagaaataatggaaatcaaTgaaaaactcgcagaagctga	8	5	1	4			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	22	29141935	29141935	T	A	SNP	HSCB	ENST00000216027	human	ensembl	69_37n	1	known	missense	c.507	p.N169K	1.000	pfam_Heat_shock_cognate_B_oligo_C,superfamily_Heat_shock_cognate_B_oligo_C,tigrfam_HscB	pfam_Heat_shock_cognate_B_oligo_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Heat_shock_cognate_B_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209	44	0	0	13	15	53.57	-	-	-	A	29141935	T	A	29141935	3	1	403	1	0	0	0	0	1	0	0	0	7425	1461	51	5	521	5	HSCB	22	29141935	Missense_Mutation	SNP	T	TCGA-AR-A24X-01A-11D-A167-09		29141935	22162631	21	40513										
RPGR	0	genome.wustl.edu	37	chrX	38146402	38146402	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgttttctcctttcttcctCcatgcaccttcacattttcc	2	16	3	0			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	38146402	38146402	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.1850	p.G617V	0.002	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	64	0	0	50	8	13.79	-	-	-	A	38146402	C	A	38146402	3	1	403	1	0	0	0	0	1	0	0	0	13634	855	30	2	2171	2	RPGR	23	38146402	Missense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09		38146402	117124158	22	40514										
IQSEC2	0	genome.wustl.edu	37	chrX	53264131	53264133	+	In_Frame_Del	DEL	TGG	TGG	-													0	0	1	0	NA	0	1	1	0	caccgtggctatggccatgaTggtggtggtggtggtggtgg							TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	53264131	53264133	TGG	-	DEL	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	in_frame_del	c.3737_3735	p.H1247in_frame_del	0.997:0.991:0.967	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	36	0	0	34	6	15	-	-	-	-	53264133	TGG	-	53264131	7	5	403	1	0	1	0	1	0	0	0	0	7872	1464	51	0	733	0	IQSEC2	23	53264131	In_Frame_Del	DEL	TGG	TCGA-AR-A24X-01A-11D-A167-09	15117729	53264131	102006429	23	40515										
ALG13	0	genome.wustl.edu	37	chrX	110951473	110951473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tctccctcttacccccacccTgtacaaaatgcataaaggat	4	15	2	0			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	110951473	110951473	T	C	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	missense	c.290	p.L97P	0.000	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	74	0	0	46	29	38.67	-	-	-	C	110951473	T	C	110951473	3	2	403	1	0	0	0	0	1	0	0	0	515	1580	55	5	758	5	ALG13	23	110951473	Missense_Mutation	SNP	T	TCGA-AR-A24X-01A-11D-A167-09	57687342	110951473	44319087	24	40516										
KIAA1210	0	genome.wustl.edu	37	chrX	118222466	118222466	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgagaagggcatctggaaggCagctgctgcataaaatcatt	12	7	2	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	118222466	118222466	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	silent	c.2727	p.L909	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	43	0	0	26	17	39.53	-	-	-	A	118222466	C	A	118222466	2	1	403	1	0	0	0	0	0	0	0	1	8266	697	25	4		4	KIAA1210	23	118222466	Silent	SNP	C	TCGA-AR-A24X-01A-11D-A167-09	7270993	118222466	37048094	25	40517										
ELF4	0	genome.wustl.edu	37	chrX	129201171	129201171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgggccctgctggtccagccCctgtgaccgtgggtggcgcc	16	15	0	1			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	129201171	129201171	C	T	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1517	p.G506E	0.152	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	22	0	0	12	10	45.45	-	-	-	T	129201171	C	T	129201171	3	4	403	1	0	0	0	0	1	0	0	0	5093	623	22	4	478	4	ELF4	23	129201171	Missense_Mutation	SNP	C	TCGA-AR-A24X-01A-11D-A167-09	10978705	129201171	26069389	26	40518										
RBBP4	0	genome.wustl.edu	37	chr1	33117549	33117549	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gcagtggaagaacgagtgatCaacgaggaatacaaaatatg	12	5	1	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	33117549	33117549	C	T	SNP	RBBP4	ENST00000373493	human	ensembl	69_37n	1	known	silent	c.51	p.I17	1.000	NULL	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521	57	0	0	94	23	19.66	-	-	-	T	33117549	C	T	33117549	2	4	404	1	0	0	0	0	0	0	0	1	13184	816	29	2		2	RBBP4	1	33117549	Silent	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09		33117549	216133072	1	40519										
PCNXL2	0	genome.wustl.edu	37	chr1	233190018	233190018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	atgaagaaattcttacctcgGaattccagtcctcgaagttg	8	9	1	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	233190018	233190018	G	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.4347	p.F1449L	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	36	0	0	29	4	12.12	-	-	-	T	233190018	G	T	233190018	3	4	404	1	0	0	0	0	1	0	0	0	11665	1165	41	2	2106	2	PCNXL2	1	233190018	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	200072469	233190018	16060603	2	40520										
ZNF496	0	genome.wustl.edu	37	chr1	247492666	247492666	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ccttggtgtgcctctcaggcCgcagccagcccccgcacagg	12	18	1	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	247492666	247492666	C	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	missense	c.215	p.R72L	0.677	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	37	0	0	25	11	30.56	-	-	-	A	247492666	C	A	247492666	3	1	404	1	0	0	0	0	1	0	0	0	18041	652	23	3	1576	3	ZNF496	1	247492666	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	14302648	247492666	1757955	3	40521										
TTC7A	0	genome.wustl.edu	37	chr2	47202156	47202156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	actccatcgcctcccgcttcCgcctgacagagagggaggag	12	15	0	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	47202156	47202156	C	T	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	1	known	missense	c.562	p.R188C	0.995	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	30	0	0	18	12	40	-	-	-	T	47202156	C	T	47202156	3	4	404	1	0	0	0	0	1	0	0	0	16809	652	23	1	576	1	TTC7A	2	47202156	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09		47202156	195997217	4	40522										
RGPD3	0	genome.wustl.edu	37	chr2	107032319	107032319	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	atctcaccttaatttgctccAtaaggactgcattggttgcc	7	11	1	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	107032319	107032319	A	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.5051	p.M1684K	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	165	0	0	169	54	24.22	-	-	-	T	107032319	A	T	107032319	3	4	404	1	0	0	0	0	1	0	0	0	13370	217	8	5	237	5	RGPD3	2	107032319	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09	59830163	107032319	136167054	5	40523										
GPR148	0	genome.wustl.edu	37	chr2	131486925	131486925	+	Frame_Shift_Del	DEL	C	C	-													0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gcagccacactggctgtcagCcccctgctgctggtgaccat							TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	131486925	131486925	C	-	DEL	GPR148	ENST00000309926	human	ensembl	69_37n	1	known	frame_shift_del	c.201	p.L69fs	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR148	HGNC	ENSG00000173302	29	0	0	36	10	21.74	-	-	-	-	131486925	C	-	131486925	7	5	404	1	0	1	0	1	0	0	0	0	6703	738	26	0	203	0	GPR148	2	131486925	Frame_Shift_Del	DEL	C	TCGA-AR-A24Z-01A-11D-A167-09	24454606	131486925	111712448	6	40524										
SCN1A	0	genome.wustl.edu	37	chr2	166909415	166909415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gaactctgaatgttctcaatGccgagacattgcccaggtcc	9	12	2	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	166909415	166909415	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.641	p.A214E	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	44	0	0	67	17	20.24	-	-	-	T	166909415	G	T	166909415	3	4	404	1	0	0	0	0	1	0	0	0	14002	1319	46	4	5476	4	SCN1A	2	166909415	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	35422490	166909415	76289958	7	40525										
TTN	0	genome.wustl.edu	37	chr2	179448488	179448488	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	atctggtgaggtgcagtattGcaccgtacccatttatcacc	9	11	2	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	179448488	179448488	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.57717	p.C19239W	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0	52	16	23.53	-	-	-	C	179448488	G	C	179448488	3	2	404	1	0	0	0	0	1	0	0	0	16832	1311	46	4	42762	4	TTN	2	179448488	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	12539073	179448488	63750885	8	40526										
INHA	0	genome.wustl.edu	37	chr2	220437229	220437229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tggatgccttggggccccccGcggtgaccagggaaggtggg	19	11	0	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	220437229	220437229	G	A	SNP	INHA	ENST00000243786	human	ensembl	69_37n	1	known	missense	c.133	p.A45T	0.000	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	14	0	0	14	10	41.67	-	-	-	A	220437229	G	A	220437229	3	1	404	1	0	0	0	0	1	0	0	0	7794	1087	38	1	135	1	INHA	2	220437229	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	40988741	220437229	22762144	9	40527										
COL4A4	0	genome.wustl.edu	37	chr2	227979409	227979409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ttctcccttttccccaggatGgccctgaaaataaaatatgt	6	11	1	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	227979409	227979409	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.493	p.H165Y	0.846	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	81	0	0	74	21	22.11	-	-	-	A	227979409	G	A	227979409	3	1	404	1	0	0	0	0	1	0	0	0	3723	1348	47	4	4743	4	COL4A4	2	227979409	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	7542180	227979409	15219964	10	40528										
PLXNB1	0	genome.wustl.edu	37	chr3	48459737	48459737	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ggcagtttggcagcggctgcAgtctccatgtcccacggaac	13	13	1	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	48459737	48459737	A	T	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	missense	c.3085	p.C1029S	1.000	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	22	0	0	0	10	100	-	-	-	T	48459737	A	T	48459737	3	4	404	1	0	0	0	0	1	0	0	0	12197	188	7	5	3418	5	PLXNB1	3	48459737	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09		48459737	149562693	11	40529										
DNAH12	0	genome.wustl.edu	37	chr3	57388140	57388140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ccactatcctgttggtcaccGggacagcaataaagctctaa	8	12	2	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	57388140	57388140	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.6908	p.P2303L	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	43	0	0	36	21	36.84	-	-	-	A	57388140	G	A	57388140	3	1	404	1	0	0	0	0	1	0	0	0	4636	1116	39	1	2434	1	DNAH12	3	57388140	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	8928403	57388140	140634290	12	40530										
SKIL	0	genome.wustl.edu	37	chr3	170078924	170078924	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ttgaagtggagcatgaatgcCtaggcaaatgtcagggttta	13	5	1	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	170078924	170078924	C	G	SNP	SKIL	ENST00000259119	human	ensembl	69_37n	1	known	missense	c.805	p.L269V	0.932	pfam_c-SKI_SMAD4-bd_dom,superfamily_SAND_dom-like	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	68	0	0	62	26	29.55	-	-	-	G	170078924	C	G	170078924	3	3	404	1	0	0	0	0	1	0	0	0	14447	680	24	4	807	4	SKIL	3	170078924	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	112690784	170078924	27943506	13	40531										
ATP13A4	0	genome.wustl.edu	37	chr3	193220428	193220428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	agagtaaatttggaattcatCctgaggagatagacatcaaa	9	5	2	4			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	193220428	193220428	C	A	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	missense	c.235	p.D79Y	1.000	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	44	0	0	21	42	66.67	-	-	-	A	193220428	C	A	193220428	3	1	404	1	0	0	0	0	1	0	0	0	1130	869	30	2	3467	2	ATP13A4	3	193220428	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	23141504	193220428	4802002	14	40532										
DEFB131	0	genome.wustl.edu	37	chr4	9446286	9446286	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gtcttgttttttgtctttggAgtcctttccttgatgttcac	8	8	3	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	9446286	9446286	A	C	SNP	DEFB131	ENST00000334879	human	ensembl	69_37n	1	known	silent	c.27	p.G9	0.021	NULL	NULL	-	no_errors	DEFB131	HGNC	ENSG00000186146	120	0	0	84	40	32.26	-	-	-	C	9446286	A	C	9446286	2	2	404	1	0	0	0	0	0	0	0	1	4452	291	11	5		5	DEFB131	4	9446286	Silent	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09		9446286	181707990	15	40533										
LAP3	0	genome.wustl.edu	37	chr4	17585198	17585198	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ctgcggagggagcggtgcttGgtctctatgaatacgatgac	15	8	1	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	17585198	17585198	G	C	SNP	LAP3	ENST00000226299	human	ensembl	69_37n	1	known	missense	c.472	p.G158R	0.999	pfam_Peptidase_M17_N	pfam_Peptidase_M17_C,pfam_Peptidase_M17_N,prints_Peptidase_M17	-	no_errors	LAP3	HGNC	ENSG00000002549	61	0	0	51	29	36.25	-	-	-	C	17585198	G	C	17585198	3	2	404	1	0	0	0	0	1	0	0	0	8677	1348	47	4	490	4	LAP3	4	17585198	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	8138912	17585198	173569078	16	40534										
NFXL1	0	genome.wustl.edu	37	chr4	47877233	47877233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	cattctccagggtgacatcgCaaaatacatgggtgaagaca	10	9	1	3			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	47877233	47877233	C	A	SNP	NFXL1	ENST00000381538	human	ensembl	69_37n	-1	known	missense	c.2157	p.L719F	1.000	smart_Znf_NFX1	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448	74	0	0	50	10	16.67	-	-	-	A	47877233	C	A	47877233	3	1	404	1	0	0	0	0	1	0	0	0	10460	709	25	4	602	4	NFXL1	4	47877233	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	30292035	47877233	143277043	17	40535										
MED20	0	genome.wustl.edu	37	chr6	41874991	41874991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	actcgagcagcagactccagCagtcactagctaccacacag	8	15	1	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	6	41874991	41874991	C	T	SNP	MED20	ENST00000265350	human	ensembl	69_37n	-1	known	missense	c.458	p.C153Y	1.000	pfam_Mediator_Med20	pfam_Mediator_Med20	-	no_errors	MED20	HGNC	ENSG00000124641	33	0	0	47	8	14.55	-	-	-	T	41874991	C	T	41874991	3	4	404	1	0	0	0	0	1	0	0	0	9509	710	25	4	184	4	MED20	6	41874991	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09		41874991	129240076	18	40536										
MANEA	0	genome.wustl.edu	37	chr6	96053674	96053674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	caagacgaagactggcaatgCtcttcctatgttttatgtct	8	9	2	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	6	96053674	96053674	C	T	SNP	MANEA	ENST00000358812	human	ensembl	69_37n	1	known	missense	c.782	p.A261V	0.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469	84	0	0	93	16	14.68	-	-	-	T	96053674	C	T	96053674	3	4	404	1	0	0	0	0	1	0	0	0	9292	797	28	4	796	4	MANEA	6	96053674	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	54178683	96053674	75061393	19	40537										
DNAH11	0	genome.wustl.edu	37	chr7	21698446	21698446	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ggcttctgcaacttgaacagActatgcaagaaacggtgcgt	11	9	1	3			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	21698446	21698446	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.5140	p.T1714P	0.863	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	41	0	0	39	16	29.09	-	-	-	C	21698446	A	C	21698446	3	2	404	1	0	0	0	0	1	0	0	0	4635	275	10	5	5258	5	DNAH11	7	21698446	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09		21698446	137440217	20	40538										
ZNF425	0	genome.wustl.edu	37	chr7	148801215	148801215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tcttgtcacactcaccgcacGcgaagggcttctcgtccctg	9	16	4	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	148801215	148801215	G	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.1748	p.A583E	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	18	0	0	9	10	52.63	-	-	-	T	148801215	G	T	148801215	3	4	404	1	0	0	0	0	1	0	0	0	17995	1087	38	3	514	3	ZNF425	7	148801215	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	127102769	148801215	10337448	21	40539										
ZNF425	0	genome.wustl.edu	37	chr7	148802311	148802311	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tttgtactttgggtatctgcAgagctggctcttggagtggc	14	7	2	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	148802311	148802311	A	C	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.652	p.C218G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	57	0	0	42	19	31.15	-	-	-	C	148802311	A	C	148802311	3	2	404	1	0	0	0	0	1	0	0	0	17995	188	7	5	1610	5	ZNF425	7	148802311	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09	1096	148802311	10336352	22	40540										
IKBKAP	0	genome.wustl.edu	37	chr9	111674571	111674572	+	Frame_Shift_Del	DEL	AG	AG	-													0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	aatgacagccacattggacaAgtcacttgaattatctccca							TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	9	111674571	111674572	AG	-	DEL	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	frame_shift_del	c.1162_1161	p.L388fs	0.949:1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	21	0	0	19	10	34.48	-	-	-	-	111674572	AG	-	111674571	7	5	404	1	0	1	0	1	0	0	0	0	7664	69	3	0	2944	0	IKBKAP	9	111674571	Frame_Shift_Del	DEL	AG	TCGA-AR-A24Z-01A-11D-A167-09		111674571	29538860	23	40541										
ADAMTS13	0	genome.wustl.edu	37	chr9	136291344	136291344	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	acctggagttgcctgatggtAaccggcaggtgcggggcgtc	17	10	0	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	9	136291344	136291344	A	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.565	p.N189Y	0.991	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	36	0	0	38	9	19.15	-	-	-	T	136291344	A	T	136291344	3	4	404	1	0	0	0	0	1	0	0	0	258	362	13	5	587	5	ADAMTS13	9	136291344	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09	24616773	136291344	4922087	24	40542										
MYO3A	0	genome.wustl.edu	37	chr10	26459429	26459429	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	aacaaccattcaaacttctgAtcaggaattcgactacaaga	5	10	3	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	26459429	26459429	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.3359	p.D1120A	0.056	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	46	0	0	45	10	18.18	-	-	-	C	26459429	A	C	26459429	3	2	404	1	0	0	0	0	1	0	0	0	10148	333	12	5	3465	5	MYO3A	10	26459429	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09		26459429	109075318	25	40543										
STOX1	0	genome.wustl.edu	37	chr10	70644582	70644582	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tcccacctgaagaatggcccGtccgagatgaagatgacttg	11	11	0	6			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	70644582	70644582	G	C	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	missense	c.1030	p.V344L	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	43	0	0	49	13	20.97	-	-	-	C	70644582	G	C	70644582	3	2	404	1	0	0	0	0	1	0	0	0	15410	1145	40	3	1040	3	STOX1	10	70644582	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	44185153	70644582	64890165	26	40544										
IDE	0	genome.wustl.edu	37	chr10	94235707	94235707	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gccattttctcaataatcttCtttagtaaaattggctgctt	5	8	3	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	94235707	94235707	C	G	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.1929	p.K643N	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	45	0	0	52	10	15.62	-	-	-	G	94235707	C	G	94235707	3	3	404	1	0	0	0	0	1	0	0	0	7547	912	32	2	1170	2	IDE	10	94235707	Missense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	23591125	94235707	41299040	27	40545										
PDE3A	0	genome.wustl.edu	37	chr12	20801709	20801709	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tgtcccggccagagtataacTtcttaattaaccttgaccat	6	11	1	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	12	20801709	20801709	T	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.2653	p.F885I	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	71	0	0	64	52	44.83	-	-	-	A	20801709	T	A	20801709	3	1	404	1	0	0	0	0	1	0	0	0	11710	1609	56	5	2703	5	PDE3A	12	20801709	Missense_Mutation	SNP	T	TCGA-AR-A24Z-01A-11D-A167-09		20801709	113050186	28	40546										
PTPRB	0	genome.wustl.edu	37	chr12	70946687	70946687	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ggagttgctgttaggattttCggcacatttgctggcaaaat	12	6	0	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	12	70946687	70946687	C	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	nonsense	c.5257	p.E1753*	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	69	0	0	71	27	27.55	-	-	-	A	70946687	C	A	70946687	4	1	404	1	0	0	0	0	0	1	0	0	12879	893	31	3	1446	3	PTPRB	12	70946687	Nonsense_Mutation	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	50144978	70946687	62905208	29	40547										
NEK5	0	genome.wustl.edu	37	chr13	52693487	52693487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tgaagaaggctacaatgttgGgatgtttcatcttttccaga	10	6	2	3			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	13	52693487	52693487	G	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.182	p.P61L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	97	0	0	33	31	48.44	-	-	-	A	52693487	G	A	52693487	3	1	404	1	0	0	0	0	1	0	0	0	10399	1232	43	4	2020	4	NEK5	13	52693487	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09		52693487	62476391	30	40548										
GINS3	0	genome.wustl.edu	37	chr16	58438557	58438557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ctttcagtgttgggagaaggGgcaggcttctcagatcacag	14	8	3	2			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	16	58438557	58438557	G	T	SNP	GINS3	ENST00000426538	human	ensembl	69_37n	1	known	missense	c.692	p.G231V	1.000	NULL	pfam_GINS_complex	-	no_errors	GINS3	HGNC	ENSG00000181938	44	0	0	45	17	27.42	-	-	-	T	58438557	G	T	58438557	3	4	404	1	0	0	0	0	1	0	0	0	6441	1232	43	4	706	4	GINS3	16	58438557	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09		58438557	31916196	31	40549										
MYH8	0	genome.wustl.edu	37	chr17	10318441	10318441	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	cctgttactcacatgtttctAtatcagcagatgccagcttc	6	12	3	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	17	10318441	10318441	A	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.797	p.I266T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	78	0	0	39	21	35	-	-	-	G	10318441	A	G	10318441	3	3	404	1	0	0	0	0	1	0	0	0	10113	449	16	5	5144	5	MYH8	17	10318441	Missense_Mutation	SNP	A	TCGA-AR-A24Z-01A-11D-A167-09		10318441	70876769	32	40550										
NLK	0	genome.wustl.edu	37	chr17	26370124	26370124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tcttcggcagctgcggcagcCgcagcagcggctgcagctgc	15	15	1	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	17	26370124	26370124	C	T	SNP	NLK	ENST00000407008	human	ensembl	69_37n	1	known	silent	c.225	p.A75	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NLK	HGNC	ENSG00000087095	54	0	0	29	13	30.95	-	-	-	T	26370124	C	T	26370124	2	4	404	1	0	0	0	0	0	0	0	1	10538	639	23	1		1	NLK	17	26370124	Silent	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	16051683	26370124	54825086	33	40551										
MAP4K1	0	genome.wustl.edu	37	chr19	39087977	39087977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ctctctcacccacacagcacGcccggcagcctttggtgtcc	8	19	2	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	19	39087977	39087977	G	A	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	missense	c.1826	p.A609V	0.039	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	24	0	0	42	10	19.23	-	-	-	A	39087977	G	A	39087977	3	1	404	1	0	0	0	0	1	0	0	0	9330	1087	38	1	773	1	MAP4K1	19	39087977	Missense_Mutation	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09		39087977	20041006	34	40552										
TPTE	0	genome.wustl.edu	37	chr21	10951293	10951293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	caaatactcgaagaagaacaTccatgagaaaaaataaggca	7	7	0	3			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	21	10951293	10951293	T	C	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.419	p.D140G	0.997	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	57	0	0	59	16	21.33	-	-	-	C	10951293	T	C	10951293	3	2	404	1	0	0	0	0	1	0	0	0	16526	1435	50	5	1296	5	TPTE	21	10951293	Missense_Mutation	SNP	T	TCGA-AR-A24Z-01A-11D-A167-09		10951293	37178602	35	40553										
COL18A1	0	genome.wustl.edu	37	chr21	46875483	46875483	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	ggctgccacatcctgctgctGctcttctgctgcctggcggc	12	16	2	0			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	21	46875483	46875483	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	silent	c.39	p.L13	0.999	pfam_DUF959_COL18_N	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	25	0	0	20	9	30	-	-	-	A	46875483	G	A	46875483	2	1	404	1	0	0	0	0	0	0	0	1	3705	1306	46	4		4	COL18A1	21	46875483	Silent	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09	35924190	46875483	1254412	36	40554										
ERCC6L	0	genome.wustl.edu	37	chrX	71426994	71426994	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	gctgcagttaatgttaaaccGacaccacctacttgagtggt	9	10	0	1			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	X	71426994	71426994	G	A	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	silent	c.1623	p.V541	0.960	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	46	0	0	32	20	38.46	-	-	-	A	71426994	G	A	71426994	2	1	404	1	0	0	0	0	0	0	0	1	5255	1045	37	1		1	ERCC6L	23	71426994	Silent	SNP	G	TCGA-AR-A24Z-01A-11D-A167-09		71426994	83843566	37	40555										
CXorf40A	0	genome.wustl.edu	37	chrX	148628334	148628334	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.965830697851541	0.797008547008547	1.19551282051282	0.59775641025641	1	1	0	tgccccgaagacttaactccCgatgaggttgtggaactaga	11	10	0	3			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	X	148628334	148628334	C	G	SNP	CXorf40A	ENST00000359293	human	ensembl	69_37n	1	known	silent	c.303	p.P101	0.000	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	84	0	0	87	32	26.89	-	-	-	G	148628334	C	G	148628334	2	3	404	1	0	0	0	0	0	0	0	1	4139	639	23	3		3	CXorf40A	23	148628334	Silent	SNP	C	TCGA-AR-A24Z-01A-11D-A167-09	77201340	148628334	6642226	38	40556										
UBE4B	0	genome.wustl.edu	37	chr1	10161225	10161225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ggaggttgatgaaaatgatcGaagagaaaagcggagcctca	14	5	1	4			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	10161225	10161225	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.407	p.R136Q	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	88	0	0	43	9	17.31	-	-	-	A	10161225	G	A	10161225	3	1	405	1	0	0	0	0	1	0	0	0	16980	1058	37	1	421	1	UBE4B	1	10161225	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09		10161225	239089396	1	40557										
LRP8	0	genome.wustl.edu	37	chr1	53715175	53715175	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gctgggtcttccggttctctGgtctccccaagacagggctc	12	14	3	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	53715175	53715175	G	A	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	silent	c.2730	p.T910	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	20	0	0	13	6	31.58	-	-	-	A	53715175	G	A	53715175	2	1	405	1	0	0	0	0	0	0	0	1	9029	1335	47	4		4	LRP8	1	53715175	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	43553950	53715175	195535446	2	40558										
ROR1	0	genome.wustl.edu	37	chr1	64605929	64605929	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	agccccgtgacttgtgtcgcGatgaatgtgaaatcctggag	13	9	0	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	64605929	64605929	G	C	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.748	p.D250H	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	42	0	0	36	9	20	-	-	-	C	64605929	G	C	64605929	3	2	405	1	0	0	0	0	1	0	0	0	13612	1058	37	3	770	3	ROR1	1	64605929	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	10890754	64605929	184644692	3	40559										
WNT2B	0	genome.wustl.edu	37	chr1	113058811	113058811	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	atctcatcagcaggggtagtCcacgctattactcgcgcctg	10	13	2	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	113058811	113058811	C	A	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	silent	c.453	p.V151	0.892	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	24	0	0	16	22	57.89	-	-	-	A	113058811	C	A	113058811	2	1	405	1	0	0	0	0	0	0	0	1	17484	842	30	2		2	WNT2B	1	113058811	Silent	SNP	C	TCGA-AR-A250-01A-31D-A167-09	48452882	113058811	136191810	4	40560										
DENND2C	0	genome.wustl.edu	37	chr1	115130504	115130504	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	cagtgacagtcatgttcaaaGaataatgtcctaccaactcc	6	11	2	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	115130504	115130504	G	C	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	missense	c.2501	p.S834C	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	46	0	0	20	5	20	-	-	-	C	115130504	G	C	115130504	3	2	405	1	0	0	0	0	1	0	0	0	4466	942	33	2	297	2	DENND2C	1	115130504	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	2071693	115130504	134120117	5	40561										
SPTA1	0	genome.wustl.edu	37	chr1	158647585	158647585	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tcctcagaggtgagtacaggTtccttctccttgatccactg	9	12	2	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	158647585	158647585	T	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.852	p.E284	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	29	0	0	18	24	57.14	-	-	-	C	158647585	T	C	158647585	2	2	405	1	0	0	0	0	0	0	0	1	15207	1722	60	5		5	SPTA1	1	158647585	Silent	SNP	T	TCGA-AR-A250-01A-31D-A167-09	43517081	158647585	90603036	6	40562										
PPOX	0	genome.wustl.edu	37	chr1	161137894	161137894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	atgagactgtgcacagttttGcccagcgccgccttggacct	11	13	0	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	161137894	161137894	G	A	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	missense	c.448	p.A150T	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	21	0	0	23	5	17.86	-	-	-	A	161137894	G	A	161137894	3	1	405	1	0	0	0	0	1	0	0	0	12425	1319	46	4	462	4	PPOX	1	161137894	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	2490309	161137894	88112727	7	40563										
F5	0	genome.wustl.edu	37	chr1	169509917	169509917	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttcttgaagaagcaatgactGactagattcagaagggtaga	11	5	2	7			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	169509917	169509917	G	C	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.4426	p.Q1476E	0.106	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	43	0	0	69	10	12.66	-	-	-	C	169509917	G	C	169509917	3	2	405	1	0	0	0	0	1	0	0	0	5385	1299	45	2	2315	2	F5	1	169509917	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	8372023	169509917	79740704	8	40564										
TNR	0	genome.wustl.edu	37	chr1	175365832	175365832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ggagctggaggccccccaggGccgtcggctggtaagagatc	17	12	0	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	175365832	175365832	G	A	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.1088	p.A363V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	24	0	0	18	14	43.75	-	-	-	A	175365832	G	A	175365832	3	1	405	1	0	0	0	0	1	0	0	0	16433	1203	42	4	3064	4	TNR	1	175365832	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	5855915	175365832	73884789	9	40565										
ANGEL2	0	genome.wustl.edu	37	chr1	213178661	213178661	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	aaactaatccaacattgtctCtgtccaacagagaaatatca	4	10	2	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	1	213178661	213178661	C	A	SNP	ANGEL2	ENST00000366962	human	ensembl	69_37n	-1	known	missense	c.848	p.R283I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	41	0	0	68	9	11.69	-	-	-	A	213178661	C	A	213178661	3	1	405	1	0	0	0	0	1	0	0	0	609	913	32	2	806	2	ANGEL2	1	213178661	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	37812829	213178661	36071960	10	40566										
UBXN2A	0	genome.wustl.edu	37	chr2	24194187	24194187	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	taatcaacctcttggtaataAtcaacaatcaaattgtgaat	4	7	4	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	2	24194187	24194187	A	G	SNP	UBXN2A	ENST00000309033	human	ensembl	69_37n	1	known	missense	c.83	p.N28S	0.006	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2A	HGNC	ENSG00000173960	62	0	0	79	34	30.09	-	-	-	G	24194187	A	G	24194187	3	3	405	1	0	0	0	0	1	0	0	0	17011	101	4	5	89	5	UBXN2A	2	24194187	Missense_Mutation	SNP	A	TCGA-AR-A250-01A-31D-A167-09		24194187	219005186	11	40567										
SLC8A1	0	genome.wustl.edu	37	chr2	40405590	40405590	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	aaggaagaaggtcttgttttTctcatactcctcatcatcaa	6	9	5	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	2	40405590	40405590	T	C	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1852	p.K618E	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	75	0	0	70	25	26.32	-	-	-	C	40405590	T	C	40405590	3	2	405	1	0	0	0	0	1	0	0	0	14795	1792	62	5	1213	5	SLC8A1	2	40405590	Missense_Mutation	SNP	T	TCGA-AR-A250-01A-31D-A167-09	16211403	40405590	202793783	12	40568										
USP34	0	genome.wustl.edu	37	chr2	61473500	61473500	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tggggatttactatatctctGataaagctataatagtgtcc	8	6	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	2	61473500	61473500	G	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	silent	c.6507	p.I2169	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	66	0	0	48	9	15.79	-	-	-	A	61473500	G	A	61473500	2	1	405	1	0	0	0	0	0	0	0	1	17162	1280	45	2		2	USP34	2	61473500	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	21067910	61473500	181725873	13	40569										
POLR1A	0	genome.wustl.edu	37	chr2	86276113	86276113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gggcatcctgccattttcctCggacctcatcatatgatgcg	9	13	2	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	2	86276113	86276113	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.2528	p.R843Q	0.005	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	48	0	0	49	9	15.52	-	-	-	T	86276113	C	T	86276113	3	4	405	1	0	0	0	0	1	0	0	0	12283	884	31	1	2702	1	POLR1A	2	86276113	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	24802613	86276113	156923260	14	40570										
SHISA5	0	genome.wustl.edu	37	chr3	48538577	48538577	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ctggtgcacccacctggcctCaggcacagcacacctttcct	8	18	1	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	48538577	48538577	C	T	SNP	SHISA5	ENST00000296444	human	ensembl	69_37n	-1	known	missense	c.226	p.E76K	0.000	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054	32	0	0	31	5	13.89	-	-	-	T	48538577	C	T	48538577	3	4	405	1	0	0	0	0	1	0	0	0	14372	835	29	2	516	2	SHISA5	3	48538577	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		48538577	149483853	15	40571										
C3orf67	0	genome.wustl.edu	37	chr3	58849603	58849603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	aaatgtgatcagcattttcaGgaaaaatccactcatctgac	6	9	4	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	58849603	58849603	G	A	SNP	C3orf67	ENST00000482387	human	ensembl	69_37n	-1	known	missense	c.899	p.P300L	1.000	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689	25	0	0	28	9	24.32	-	-	-	A	58849603	G	A	58849603	3	1	405	1	0	0	0	0	1	0	0	0	2261	1000	35	4	812	4	C3orf67	3	58849603	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	10311026	58849603	139172827	16	40572										
CRYBG3	0	genome.wustl.edu	37	chr3	97596567	97596567	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gtgttaccttccagttgccaGatccttccatcacattttac	5	13	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	97596567	97596567	G	A	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.685	p.D229N	0.022	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	30	0	0	25	4	13.79	-	-	-	A	97596567	G	A	97596567	3	1	405	1	0	0	0	0	1	0	0	0	3943	942	33	2	687	2	CRYBG3	3	97596567	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	38746964	97596567	100425863	17	40573										
PHLDB2	0	genome.wustl.edu	37	chr3	111603283	111603283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	cactacatcctccctcagtgGatatccacttggaagagcag	8	13	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	111603283	111603283	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.359	p.G120E	0.075	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	30	0	0	50	9	15.25	-	-	-	A	111603283	G	A	111603283	3	1	405	1	0	0	0	0	1	0	0	0	11926	1174	41	2	446	2	PHLDB2	3	111603283	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	14006716	111603283	86419147	18	40574										
ROPN1B	0	genome.wustl.edu	37	chr3	125694466	125694466	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	agagagcggtctgagcgagtCgctttgtgtaactgggcaga	16	7	1	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	125694466	125694466	C	T	SNP	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	silent	c.177	p.V59	0.001	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	56	0	0	59	11	15.71	-	-	-	T	125694466	C	T	125694466	2	4	405	1	0	0	0	0	0	0	0	1	13610	871	31	1		1	ROPN1B	3	125694466	Silent	SNP	C	TCGA-AR-A250-01A-31D-A167-09	14091183	125694466	72327964	19	40575										
P2RY1	0	genome.wustl.edu	37	chr3	152554344	152554344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ctctcctctgaggagaaaatCgatttacctggtaatcattg	8	9	3	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	152554344	152554344	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	missense	c.773	p.S258L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	54	0	0	36	13	26.53	-	-	-	T	152554344	C	T	152554344	3	4	405	1	0	0	0	0	1	0	0	0	11419	893	31	1	775	1	P2RY1	3	152554344	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	26859878	152554344	45468086	20	40576										
ABCC5	0	genome.wustl.edu	37	chr3	183643468	183643468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttgaatcaataagtctgtctCtgtgtccatggcagctgtgg	11	8	3	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	3	183643468	183643468	C	G	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.4087	p.E1363Q	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	71	0	0	72	10	12.2	-	-	-	G	183643468	C	G	183643468	3	3	405	1	0	0	0	0	1	0	0	0	56	922	32	2	234	2	ABCC5	3	183643468	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	31089124	183643468	14378962	21	40577										
FAM193A	0	genome.wustl.edu	37	chr4	2691340	2691340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tttgggaatactccagagtgGaatagttctaaatttataag	9	4	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	4	2691340	2691340	G	C	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	missense	c.1566	p.W522C	1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	54	0	0	82	13	13.68	-	-	-	C	2691340	G	C	2691340	3	2	405	1	0	0	0	0	1	0	0	0	5566	1183	41	2	1604	2	FAM193A	4	2691340	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09		2691340	188462936	22	40578										
TBC1D1	0	genome.wustl.edu	37	chr4	38020062	38020062	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	aggagatatccttttgctctCaggtaaatggagatgggttt	12	5	1	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	4	38020062	38020062	C	T	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	nonsense	c.970	p.Q324*	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	75	0	0	69	9	11.54	-	-	-	T	38020062	C	T	38020062	4	4	405	1	0	0	0	0	0	1	0	0	15689	827	29	2	980	2	TBC1D1	4	38020062	Nonsense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	35328722	38020062	153134214	23	40579										
KLB	0	genome.wustl.edu	37	chr4	39439551	39439551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tttttctttaaaagagtccaCgccagatgtgcagggccagt	10	9	1	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	4	39439551	39439551	C	T	SNP	KLB	ENST00000257408	human	ensembl	69_37n	1	known	missense	c.1541	p.T514M	0.988	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962	44	0	0	66	10	13.16	-	-	-	T	39439551	C	T	39439551	3	4	405	1	0	0	0	0	1	0	0	0	8385	536	19	1	1551	1	KLB	4	39439551	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	1419489	39439551	151714725	24	40580										
NUP155	0	genome.wustl.edu	37	chr5	37310731	37310731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	taaactaatgccatcaacagCggcattatctctgatgtagc	7	10	2	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	5	37310731	37310731	C	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2551	p.A851T	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	39	0	0	33	12	26.67	-	-	-	T	37310731	C	T	37310731	3	4	405	1	0	0	0	0	1	0	0	0	10829	768	27	1	1676	1	NUP155	5	37310731	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		37310731	143604529	25	40581										
PARP8	0	genome.wustl.edu	37	chr5	50090154	50090154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gtctcccctgcatttattttCtactttgcgcaggttggtaa	8	10	2	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	5	50090154	50090154	C	G	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	missense	c.851	p.S284C	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	73	0	0	67	15	18.29	-	-	-	G	50090154	C	G	50090154	3	3	405	1	0	0	0	0	1	0	0	0	11538	913	32	2	893	2	PARP8	5	50090154	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	12779423	50090154	130825106	26	40582										
CCDC99	0	genome.wustl.edu	37	chr5	169018164	169018164	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	acaacaacaaaaaatgcaccTggagaaattggaagaacaac	7	8	0	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	5	169018164	169018164	T	A	SNP	CCDC99	ENST00000265295	human	ensembl	69_37n	1	known	missense	c.272	p.L91Q	0.969	NULL	NULL	-	no_errors	CCDC99	HGNC	ENSG00000040275	32	0	0	49	19	27.94	-	-	-	A	169018164	T	A	169018164	3	1	405	1	0	0	0	0	1	0	0	0	2903	1580	55	5	278	5	CCDC99	5	169018164	Missense_Mutation	SNP	T	TCGA-AR-A250-01A-31D-A167-09	118928010	169018164	11897096	27	40583										
CANX	0	genome.wustl.edu	37	chr5	179149818	179149818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tttctagggaatctggaaacCcaggaaaataccaaatccag	8	9	2	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	5	179149818	179149818	C	T	SNP	CANX	ENST00000415618	human	ensembl	69_37n	1	known	missense	c.1301	p.P434L	1.000	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022	60	0	0	50	12	19.35	-	-	-	T	179149818	C	T	179149818	3	4	405	1	0	0	0	0	1	0	0	0	2643	623	22	4	1234	4	CANX	5	179149818	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	10131654	179149818	1765442	28	40584										
CCDC90A	0	genome.wustl.edu	37	chr6	13791083	13791083	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	cccagagctactgttaggcaCgtaaatatagaccctgtaag	9	10	0	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	6	13791083	13791083	C	T	SNP	CCDC90A	ENST00000379170	human	ensembl	69_37n	-1	known	silent	c.1038	p.T346	0.970	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90A	HGNC	ENSG00000050393	37	0	0	72	9	11.11	-	-	-	T	13791083	C	T	13791083	2	4	405	1	0	0	0	0	0	0	0	1	2895	523	19	1		1	CCDC90A	6	13791083	Silent	SNP	C	TCGA-AR-A250-01A-31D-A167-09		13791083	157323984	29	40585										
FANCE	0	genome.wustl.edu	37	chr6	35423762	35423762	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tgtctgaaagatgccagagaCagctccaaagtctatgtagg	11	8	2	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	6	35423762	35423762	C	G	SNP	FANCE	ENST00000229769	human	ensembl	69_37n	1	known	missense	c.487	p.Q163E	0.664	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039	14	0	0	14	6	30	-	-	-	G	35423762	C	G	35423762	3	3	405	1	0	0	0	0	1	0	0	0	5712	479	17	4	493	4	FANCE	6	35423762	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	21632679	35423762	135691305	30	40586										
CASP8AP2	0	genome.wustl.edu	37	chr6	90573973	90573973	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttttgagcattgaccttaatCacctgagacctattccagaa	6	10	1	4			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	6	90573973	90573973	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	42	0	0	21	4	16	-	-	-	T	90573973	C	T	90573973	1	4	405	0	1	0	0	0	0	0	0	0	2703	826	29	2		2	CASP8AP2	6	90573973	RNA	SNP	C	TCGA-AR-A250-01A-31D-A167-09	55150211	90573973	80541094	31	40587										
FAM184A	0	genome.wustl.edu	37	chr6	119327762	119327762	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	cttttccttaccatatcttgGaggtggccaatctgtaagta	8	9	2	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	6	119327762	119327762	G	C	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	silent	c.1665	p.L555	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	46	0	0	36	8	18.18	-	-	-	C	119327762	G	C	119327762	2	2	405	1	0	0	0	0	0	0	0	1	5552	1161	41	2		2	FAM184A	6	119327762	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	28753789	119327762	51787305	32	40588										
GSDMC	0	genome.wustl.edu	37	chr8	130774954	130774954	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	agcgccttcttcttcactctGagactctctccttggccttg	7	15	5	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	8	130774954	130774954	G	C	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	80	0	0	96	16	14.29	-	-	-	C	130774954	G	C	130774954	2	2	405	1	0	0	0	0	0	0	0	1	6869	1277	45	2		2	GSDMC	8	130774954	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09		130774954	15589068	33	40589										
FAM75A3	0	genome.wustl.edu	37	chr9	40705911	40705912	+	Frame_Shift_Ins	INS	-	-	A													0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	accagtcactgctgagagccINSaaaaaacagtaaaaaacaga							TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	9	40705911	40705912	-	A	INS	FAM75A3	ENST00000356699	human	ensembl	69_37n	1	known	frame_shift_ins	c.3568_3569	p.T1192fs	0.000:0.001	NULL	NULL	-	no_errors	FAM75A3	HGNC	ENSG00000147926	24	0	0	26	20	43.48	-	-	-	A	40705912	-	A	40705911	7	5	405	1	0	1	1	0	0	0	0	0	5666	595	21	0	3582	0	FAM75A3	9	40705911	Frame_Shift_Ins	INS	-	TCGA-AR-A250-01A-31D-A167-09		40705911	100507520	34	40590										
GNA14	0	genome.wustl.edu	37	chr9	80049397	80049397	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tgctccctggagagcatggaGaccttgtccacttccacttc	9	14	0	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	9	80049397	80049397	G	C	SNP	GNA14	ENST00000341700	human	ensembl	69_37n	-1	known	silent	c.351	p.V117	0.007	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049	37	0	0	47	8	14.55	-	-	-	C	80049397	G	C	80049397	2	2	405	1	0	0	0	0	0	0	0	1	6554	929	33	2		2	GNA14	9	80049397	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	39343486	80049397	61164034	35	40591										
CARD9	0	genome.wustl.edu	37	chr9	139259656	139259656	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ggctgtttcgggctccccccGccggcaaggcagcctggaaa	14	15	0	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	9	139259656	139259656	G	A	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	silent	c.1371	p.G457	0.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	17	0	0	15	6	28.57	-	-	-	A	139259656	G	A	139259656	2	1	405	1	0	0	0	0	0	0	0	1	2677	1074	38	1		1	CARD9	9	139259656	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	59210259	139259656	1953775	36	40592										
KIAA1217	0	genome.wustl.edu	37	chr10	24508619	24508619	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gaatgccgcagaaccaaggaAcgcctttctaatggaaacag	10	10	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	10	24508619	24508619	A	G	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.135	p.E45	0.427	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	20	0	0	14	12	46.15	-	-	-	G	24508619	A	G	24508619	2	3	405	1	0	0	0	0	0	0	0	1	8268	40	2	5		5	KIAA1217	10	24508619	Silent	SNP	A	TCGA-AR-A250-01A-31D-A167-09		24508619	111026128	37	40593										
LIPK	0	genome.wustl.edu	37	chr10	90512357	90512357	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	caggacattgtggctgatccCaaggatgttgaaaatttact	10	7	0	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	10	90512357	90512357	C	G	SNP	LIPK	ENST00000404190	human	ensembl	69_37n	1	known	silent	c.1044	p.P348	0.022	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPK	HGNC	ENSG00000204021	30	0	0	23	10	30.3	-	-	-	G	90512357	C	G	90512357	2	3	405	1	0	0	0	0	0	0	0	1	8883	581	21	4		4	LIPK	10	90512357	Silent	SNP	C	TCGA-AR-A250-01A-31D-A167-09	66003738	90512357	45022390	38	40594										
FAM160A2	0	genome.wustl.edu	37	chr11	6235673	6235673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	aacggcgtggggcaggtcctGctgcagggccctcagcccag	16	14	1	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	11	6235673	6235673	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	missense	c.2567	p.A856V	0.983	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	34	0	0	37	9	19.57	-	-	-	A	6235673	G	A	6235673	3	1	405	1	0	0	0	0	1	0	0	0	5509	1319	46	4	401	4	FAM160A2	11	6235673	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09		6235673	128770843	39	40595										
EIF4G2	0	genome.wustl.edu	37	chr11	10824832	10824832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	cattcgggcaaagtactgatCcattaaggactgataagaga	10	7	0	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	11	10824832	10824832	C	A	SNP	EIF4G2	ENST00000339995	human	ensembl	69_37n	-1	known	missense	c.823	p.D275Y	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_W2_domain,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_start_codon	EIF4G2	HGNC	ENSG00000110321	51	0	0	58	7	10.77	-	-	-	A	10824832	C	A	10824832	3	1	405	1	0	0	0	0	1	0	0	0	5074	855	30	2	1952	2	EIF4G2	11	10824832	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	4589159	10824832	124181684	40	40596										
OR4X1	0	genome.wustl.edu	37	chr11	48285568	48285568	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	accatcctggccagcaaagtGctcacctcccccatgtattt	6	16	1	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	11	48285568	48285568	G	T	SNP	OR4X1	ENST00000320048	human	ensembl	69_37n	1	known	silent	c.156	p.V52	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567	87	0	0	112	22	16.42	-	-	-	T	48285568	G	T	48285568	2	4	405	1	0	0	0	0	0	0	0	1	11157	1306	46	4		4	OR4X1	11	48285568	Silent	SNP	G	TCGA-AR-A250-01A-31D-A167-09	37460736	48285568	86720948	41	40597										
XRRA1	0	genome.wustl.edu	37	chr11	74617338	74617338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	agtataatccagttgctcatCtgagtcctcaagcatccttg	7	11	3	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	11	74617338	74617338	C	G	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	missense	c.925	p.D309H	0.133	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	57	0	0	89	12	11.88	-	-	-	G	74617338	C	G	74617338	3	3	405	1	0	0	0	0	1	0	0	0	17558	913	32	2	1493	2	XRRA1	11	74617338	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	26331770	74617338	60389178	42	40598										
ACAD8	0	genome.wustl.edu	37	chr11	134131253	134131253	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gaagcagtttggagagcctcTggccagtaaccaggtaacct	12	10	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	11	134131253	134131253	T	C	SNP	ACAD8	ENST00000281182	human	ensembl	69_37n	1	known	missense	c.926	p.L309P	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD8	HGNC	ENSG00000151498	45	0	0	23	6	20.69	-	-	-	C	134131253	T	C	134131253	3	2	405	1	0	0	0	0	1	0	0	0	110	1580	55	5	956	5	ACAD8	11	134131253	Missense_Mutation	SNP	T	TCGA-AR-A250-01A-31D-A167-09	59513915	134131253	875263	43	40599										
PRB4	0	genome.wustl.edu	37	chr12	11461753	11461753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ggggtggtccttgtggctttCctggaggaggtgggggacgt	21	6	0	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	12	11461753	11461753	C	T	SNP	PRB4	ENST00000279575	human	ensembl	69_37n	-1	known	missense	c.164	p.G55E	0.002	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	123	1	0.81	108	33	23.4	-	-	-	T	11461753	C	T	11461753	3	4	405	1	0	0	0	0	1	0	0	0	12526	855	30	2	583	2	PRB4	12	11461753	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		11461753	122390142	44	40600										
EDNRB	0	genome.wustl.edu	37	chr13	78492504	78492504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	gtctcctttaggcacctccgCaggtgccaacgaccgcgcca	10	17	1	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	13	78492504	78492504	C	T	SNP	EDNRB	ENST00000334286	human	ensembl	69_37n	-1	known	missense	c.205	p.A69T	0.003	prints_ETB_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ETB_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Bombsn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	EDNRB	HGNC	ENSG00000136160	41	0	0	19	16	45.71	-	-	-	T	78492504	C	T	78492504	3	4	405	1	0	0	0	0	1	0	0	0	4955	710	25	4	1272	4	EDNRB	13	78492504	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		78492504	36677374	45	40601										
RPL10L	0	genome.wustl.edu	37	chr14	47120792	47120792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttcatcagacaccatgtggcCaccgagtgggaactcatcca	9	13	3	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	14	47120792	47120792	C	T	SNP	RPL10L	ENST00000298283	human	ensembl	69_37n	-1	known	missense	c.148	p.G50S	0.999	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496	44	0	0	32	4	11.11	-	-	-	T	47120792	C	T	47120792	3	4	405	1	0	0	0	0	1	0	0	0	13642	594	21	4	500	4	RPL10L	14	47120792	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		47120792	60228748	46	40602										
RPS6KA5	0	genome.wustl.edu	37	chr14	91360826	91360826	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	acagctgaaacaagcttcctCatgatgtagctggcttccgt	9	11	1	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	14	91360826	91360826	C	A	SNP	RPS6KA5	ENST00000261991	human	ensembl	69_37n	-1	known	missense	c.1575	p.M525I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784	34	0	0	40	10	20	-	-	-	A	91360826	C	A	91360826	3	1	405	1	0	0	0	0	1	0	0	0	13740	826	29	2	859	2	RPS6KA5	14	91360826	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	44240034	91360826	15988714	47	40603										
MAP1A	0	genome.wustl.edu	37	chr15	43813808	43813808	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttgctacatcttcccaggtgGtcgtggggactctgccctct	11	13	3	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	15	43813808	43813808	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.137	p.G46V	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	56	0	0	57	9	13.64	-	-	-	T	43813808	G	T	43813808	3	4	405	1	0	0	0	0	1	0	0	0	9298	1261	44	4	139	4	MAP1A	15	43813808	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09		43813808	58717584	48	40604										
NEDD4	0	genome.wustl.edu	37	chr15	56207669	56207669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ctcccaatgaaatacttcttCgtaaaataccatggtttttg	5	9	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	15	56207669	56207669	C	T	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	missense	c.1361	p.R454Q	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	44	0	0	38	36	48.65	-	-	-	T	56207669	C	T	56207669	3	4	405	1	0	0	0	0	1	0	0	0	10382	884	31	1	2698	1	NEDD4	15	56207669	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	12393861	56207669	46323723	49	40605										
WDR59	0	genome.wustl.edu	37	chr16	74943795	74943795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tggccacgcttcactttctgCagggctgtgtccttcaggat	11	12	3	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	16	74943795	74943795	C	A	SNP	WDR59	ENST00000569229	human	ensembl	69_37n	-1	novel	missense	c.59	p.C20F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR59	HGNC	ENSG00000103091	25	0	0	34	7	17.07	-	-	-	A	74943795	C	A	74943795	3	1	405	1	0	0	0	0	1	0	0	0	17405	697	25	4	1562	4	WDR59	16	74943795	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		74943795	15410958	50	40606										
ANKRD11	0	genome.wustl.edu	37	chr16	89349778	89349778	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttccttggtatcttttttctCtttaaaacatttatcaaatt	2	7	3	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	16	89349778	89349778	C	G	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.3172	p.E1058Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	77	0	0	125	26	17.22	-	-	-	G	89349778	C	G	89349778	3	3	405	1	0	0	0	0	1	0	0	0	639	922	32	2	4839	2	ANKRD11	16	89349778	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	14405983	89349778	1004975	51	40607										
SLC13A5	0	genome.wustl.edu	37	chr17	6606341	6606341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tcccgtcccggtcagggtggCggtgcccccgatgctggccg	16	16	1	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	17	6606341	6606341	C	T	SNP	SLC13A5	ENST00000433363	human	ensembl	69_37n	-1	known	missense	c.664	p.A222T	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485	35	0	0	22	6	21.43	-	-	-	T	6606341	C	T	6606341	3	4	405	1	0	0	0	0	1	0	0	0	14484	768	27	1	1074	1	SLC13A5	17	6606341	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		6606341	74588869	52	40608										
CACNB1	0	genome.wustl.edu	37	chr17	37331819	37331819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tgctggggtaaaggcctgggGgctggcccagctcccctggg	18	12	0	0			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	17	37331819	37331819	G	A	SNP	CACNB1	ENST00000394303	human	ensembl	69_37n	-1	known	missense	c.1424	p.P475L	0.999	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	21	0	0	49	22	30.99	-	-	-	A	37331819	G	A	37331819	3	1	405	1	0	0	0	0	1	0	0	0	2577	1232	43	4	376	4	CACNB1	17	37331819	Missense_Mutation	SNP	G	TCGA-AR-A250-01A-31D-A167-09	30725478	37331819	43863391	53	40609										
CNTD1	0	genome.wustl.edu	37	chr17	40951117	40951117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	catgaggccacgatcggcctCcctcgttgactttcagtttg	10	13	1	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	17	40951117	40951117	C	T	SNP	CNTD1	ENST00000588408	human	ensembl	69_37n	1	known	missense	c.32	p.S11F	0.001	NULL	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CNTD1	HGNC	ENSG00000176563	17	0	0	23	11	32.35	-	-	-	T	40951117	C	T	40951117	3	4	405	1	0	0	0	0	1	0	0	0	3665	855	30	2	34	2	CNTD1	17	40951117	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	3619298	40951117	40244093	54	40610										
KIAA1328	0	genome.wustl.edu	37	chr18	34415224	34415224	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tgctgaaggaaatgtcagatCaagacacaagctgatgagtc	11	7	2	5			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	18	34415224	34415224	C	G	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	nonsense	c.122	p.S41*	0.992	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	49	0	0	52	6	10.34	-	-	-	G	34415224	C	G	34415224	4	3	405	1	0	0	0	0	0	1	0	0	8277	838	29	2	132	2	KIAA1328	18	34415224	Nonsense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		34415224	43662024	55	40611										
MBD1	0	genome.wustl.edu	37	chr18	47799778	47799778	+	Frame_Shift_Del	DEL	C	C	-													0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tgtccactcgtcctgggtatCcgccttctcttgcttcacct							TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	18	47799778	47799778	C	-	DEL	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	frame_shift_del	c.1663	p.D555fs	0.896	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	21	0	0	16	2	11.11	-	-	-	-	47799778	C	-	47799778	7	5	405	1	0	1	0	1	0	0	0	0	9413	855	30	0	517	0	MBD1	18	47799778	Frame_Shift_Del	DEL	C	TCGA-AR-A250-01A-31D-A167-09	13384554	47799778	30277470	56	40612										
C19orf42	0	genome.wustl.edu	37	chr19	16764862	16764862	+	Frame_Shift_Del	DEL	T	T	-													0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	tcacacaatcatgcagaacaTcatgaagatgttccacaggg							TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	19	16764862	16764862	T	-	DEL	C19orf42	ENST00000487803	human	ensembl	69_37n	-1	known	frame_shift_del	c.196	p.M66fs	1.000	NULL	NULL	-	no_errors	C19orf42	HGNC	ENSG00000214046	37	0	0	46	12	20.69	-	-	-	-	16764862	T	-	16764862	7	5	405	1	0	1	0	1	0	0	0	0	1943	1435	50	0	39	0	C19orf42	19	16764862	Frame_Shift_Del	DEL	T	TCGA-AR-A250-01A-31D-A167-09		16764862	42364121	57	40613										
UNC13A	0	genome.wustl.edu	37	chr19	17740081	17740081	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ctccttggagcagtaggaggCaaagtccttggagatgatgt	14	7	0	2			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	19	17740081	17740081	C	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.3985	p.A1329S	0.836	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	39	0	0	36	8	18.18	-	-	-	A	17740081	C	A	17740081	3	1	405	1	0	0	0	0	1	0	0	0	17081	710	25	4	1442	4	UNC13A	19	17740081	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	975219	17740081	41388902	58	40614										
CACNA1F	0	genome.wustl.edu	37	chrX	49071972	49071972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	atagatggggccatggtcctCtgcatatgcatcgatggcct	12	10	1	1			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	X	49071972	49071972	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.3301	p.E1101K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	45	0	0	37	10	21.28	-	-	-	T	49071972	C	T	49071972	3	4	405	1	0	0	0	0	1	0	0	0	2568	922	32	2	2716	2	CACNA1F	23	49071972	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09		49071972	106198588	59	40615										
CPXCR1	0	genome.wustl.edu	37	chrX	88008722	88008722	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	ttcccagaaaattggtctctCacaagcccttaaatgataga	6	10	2	3			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	X	88008722	88008722	C	T	SNP	CPXCR1	ENST00000276127	human	ensembl	69_37n	1	known	missense	c.307	p.H103Y	0.001	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183	33	0	0	12	23	65.71	-	-	-	T	88008722	C	T	88008722	3	4	405	1	0	0	0	0	1	0	0	0	3866	826	29	2	309	2	CPXCR1	23	88008722	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	38936750	88008722	67261838	60	40616										
TBC1D8B	0	genome.wustl.edu	37	chrX	106116842	106116842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.278688524590164	17	0.00135193826982858	2.53864920390344	4.3804143126177	1.58601207870641	0.514813299540291	1	10	agaccctctataacttatttCatgaggaccctgaagaagaa	7	9	2	5			TCGA-AR-A250-01A-31D-A167-09	TCGA-AR-A250-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7d9a372-fcd1-4462-9e0b-7eb46ddb68fd	0035e0c2-0376-4050-a03e-df556d408b94	X	106116842	106116842	C	G	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.3010	p.H1004D	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	56	0	0	40	16	28.57	-	-	-	G	106116842	C	G	106116842	3	3	405	1	0	0	0	0	1	0	0	0	15721	826	29	2	3158	2	TBC1D8B	23	106116842	Missense_Mutation	SNP	C	TCGA-AR-A250-01A-31D-A167-09	18108120	106116842	49153718	61	40617										
VPS13D	0	genome.wustl.edu	37	chr1	12446242	12446242	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccatattttggtttcctttcAggtgcttgtgaggttagaag	11	6	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	12446242	12446242	A	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	splice_site	c.11485-2	e59-2	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707	98	0	0	102	20	16.39	-	-	-	G	12446242	A	G	12446242	5	3	406	1	0	0	0	0	0	0	1	0	17289	202	7	5	11717	5	VPS13D	1	12446242	Splice_Site	SNP	A	TCGA-AR-A251-01A-12D-A167-09		12446242	236804379	1	40618										
RCC2	0	genome.wustl.edu	37	chr1	17736479	17736479	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cccccactcacctgctctgaGaaaatgccatccagagtctt	6	16	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	17736479	17736479	G	C	SNP	RCC2	ENST00000375433	human	ensembl	69_37n	-1	known	missense	c.1455	p.F485L	1.000	superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051	44	0	0	49	22	30.99	-	-	-	C	17736479	G	C	17736479	3	2	406	1	0	0	0	0	1	0	0	0	13257	933	33	2	121	2	RCC2	1	17736479	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	5290237	17736479	231514142	2	40619										
DHCR24	0	genome.wustl.edu	37	chr1	55319845	55319845	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	agcttcaggagggagatcttGggaggcaccatccagccaaa	13	10	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	55319845	55319845	G	C	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	silent	c.1083	p.P361	0.994	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	49	0	0	35	10	22.22	-	-	-	C	55319845	G	C	55319845	2	2	406	1	0	0	0	0	0	0	0	1	4512	1335	47	4		4	DHCR24	1	55319845	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	37583366	55319845	193930776	3	40620										
WLS	0	genome.wustl.edu	37	chr1	68624831	68624831	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gagatgtgaaggtgcatttgAgtttccgtggtactctttca	12	6	2	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	68624831	68624831	A	G	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.479	p.L160P	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	41	0	0	55	11	16.67	-	-	-	G	68624831	A	G	68624831	3	3	406	1	0	0	0	0	1	0	0	0	17473	304	11	5	1312	5	WLS	1	68624831	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	13304986	68624831	180625790	4	40621										
CLCA1	0	genome.wustl.edu	37	chr1	86952406	86952406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcagcttcaggagggacgtcCatctgcagcgggcttcgatc	14	12	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	86952406	86952406	C	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	silent	c.1152	p.S384	0.955	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	40	0	0	37	9	19.57	-	-	-	T	86952406	C	T	86952406	2	4	406	1	0	0	0	0	0	0	0	1	3487	581	21	4		4	CLCA1	1	86952406	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	18327575	86952406	162298215	5	40622										
GBP5	0	genome.wustl.edu	37	chr1	89732107	89732107	+	Frame_Shift_Del	DEL	C	C	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gtaggaacagaattctgtcaCttgttgcacaaattcaggct							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	89732107	89732107	C	-	DEL	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	frame_shift_del	c.790	p.V264fs	0.002	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	88	0	0	55	41	41.84	-	-	-	-	89732107	C	-	89732107	7	5	406	1	0	1	0	1	0	0	0	0	6327	565	20	0	994	0	GBP5	1	89732107	Frame_Shift_Del	DEL	C	TCGA-AR-A251-01A-12D-A167-09	2779701	89732107	159518514	6	40623										
GBP5	0	genome.wustl.edu	37	chr1	89732236	89732236	+	Frame_Shift_Del	DEL	G	G	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gaacttctgtatacacagacGgggcaaattgaaattttgaa							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	89732236	89732236	G	-	DEL	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	frame_shift_del	c.661	p.R221fs	0.954	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	72	0	0	37	30	44.78	-	-	-	-	89732236	G	-	89732236	7	5	406	1	0	1	0	1	0	0	0	0	6327	1116	39	0	1123	0	GBP5	1	89732236	Frame_Shift_Del	DEL	G	TCGA-AR-A251-01A-12D-A167-09	129	89732236	159518385	7	40624										
CELSR2	0	genome.wustl.edu	37	chr1	109804509	109804509	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	catacggtgcagctgaaataCtacaataaggtgggtgtgga	13	6	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	109804509	109804509	C	G	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	nonsense	c.4377	p.Y1459*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	34	0	0	21	14	40	-	-	-	G	109804509	C	G	109804509	4	3	406	1	0	0	0	0	0	1	0	0	3251	576	20	4	4395	4	CELSR2	1	109804509	Nonsense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	20072273	109804509	139446112	8	40625										
SPAG17	0	genome.wustl.edu	37	chr1	118574321	118574321	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caaggttcatttacctttttCtcttcttcttttgggtgttc	6	9	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	118574321	118574321	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.3603	p.E1201D	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	137	0	0	72	140	66.04	-	-	-	A	118574321	C	A	118574321	3	1	406	1	0	0	0	0	1	0	0	0	15070	912	32	2	3164	2	SPAG17	1	118574321	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	8769812	118574321	130676300	9	40626										
MTMR11	0	genome.wustl.edu	37	chr1	149905591	149905591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	agggtgatgccaggacaagcGcttcacatggggcagaagag	16	8	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	149905591	149905591	G	A	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.772	p.R258C	1.000	pfam_Myotub-related	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	16	0	0	16	15	48.39	-	-	-	A	149905591	G	A	149905591	3	1	406	1	0	0	0	0	1	0	0	0	10012	1101	38	1	1432	1	MTMR11	1	149905591	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	31331270	149905591	99345030	10	40627										
SPTA1	0	genome.wustl.edu	37	chr1	158619688	158619688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gggcactgcccagcagctgcCgctgttcatctgcaagcctc	11	16	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	158619688	158619688	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.3527	p.R1176Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	23	0	0	14	6	30	-	-	-	T	158619688	C	T	158619688	3	4	406	1	0	0	0	0	1	0	0	0	15207	652	23	1	3844	1	SPTA1	1	158619688	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	8714097	158619688	90630933	11	40628										
ADCY10	0	genome.wustl.edu	37	chr1	167815281	167815281	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgcacctcaaatgagggatcAttctgtttcagggccttttg	10	9	4	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	167815281	167815281	A	C	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.2658	p.N886K	0.000	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	36	0	0	42	11	20.75	-	-	-	C	167815281	A	C	167815281	3	2	406	1	0	0	0	0	1	0	0	0	293	214	8	5	2230	5	ADCY10	1	167815281	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	9195593	167815281	81435340	12	40629										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185276629	185276629	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tttactccttacctttagccTtggaagcttaagaaactcct	5	11	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	185276629	185276629	T	A	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	missense	c.523	p.R175W	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	53	0	0	33	19	36.54	-	-	-	A	185276629	T	A	185276629	3	1	406	1	0	0	0	0	1	0	0	0	7984	1608	56	5	1445	5	IVNS1ABP	1	185276629	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	17461348	185276629	63973992	13	40630										
FAIM3	0	genome.wustl.edu	37	chr1	207087275	207087275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcccttgtattctgccttgaTgaagttggtggtggatacca	12	8	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	207087275	207087275	T	G	SNP	FAIM3	ENST00000367091	human	ensembl	69_37n	-1	known	missense	c.202	p.I68L	0.001	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	FAIM3	HGNC	ENSG00000162894	42	0	0	23	21	47.73	-	-	-	G	207087275	T	G	207087275	3	3	406	1	0	0	0	0	1	0	0	0	5417	1464	51	5	998	5	FAIM3	1	207087275	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	21810646	207087275	42163346	14	40631										
OR2M5	0	genome.wustl.edu	37	chr1	248309314	248309314	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctcccatgctgaatcccctcAtctacagcctccgcaacaag	5	18	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	1	248309314	248309314	A	G	SNP	OR2M5	ENST00000366476	human	ensembl	69_37n	1	known	missense	c.865	p.I289V	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727	32	0	0	58	13	18.31	-	-	-	G	248309314	A	G	248309314	3	3	406	1	0	0	0	0	1	0	0	0	11086	217	8	5	867	5	OR2M5	1	248309314	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	41222039	248309314	941307	15	40632										
GRHL1	0	genome.wustl.edu	37	chr2	10130840	10130840	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	acagggagctgagcggaaaaTcagggatgaagaacgaaagc	15	6	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	10130840	10130840	T	C	SNP	GRHL1	ENST00000324907	human	ensembl	69_37n	1	known	missense	c.1286	p.I429T	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317	55	0	0	8	19	70.37	-	-	-	C	10130840	T	C	10130840	3	2	406	1	0	0	0	0	1	0	0	0	6814	1435	50	5	1324	5	GRHL1	2	10130840	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09		10130840	233068533	16	40633										
SLC8A1	0	genome.wustl.edu	37	chr2	40655750	40655750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gatgttctcaatactttcacCtccatgatgccaatgctctc	5	13	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	40655750	40655750	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1671	p.E557D	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	46	0	0	43	16	27.12	-	-	-	A	40655750	C	A	40655750	3	1	406	1	0	0	0	0	1	0	0	0	14795	680	24	4	1398	4	SLC8A1	2	40655750	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	30524910	40655750	202543623	17	40634										
KCNG3	0	genome.wustl.edu	37	chr2	42671481	42671481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accaatgaagtgacgggcaaGcttaatcacccaaaaaatcc	7	11	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	42671481	42671481	G	A	SNP	KCNG3	ENST00000306078	human	ensembl	69_37n	-1	known	missense	c.904	p.L302F	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126	33	0	0	52	11	17.46	-	-	-	A	42671481	G	A	42671481	3	1	406	1	0	0	0	0	1	0	0	0	8083	971	34	4	410	4	KCNG3	2	42671481	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	2015731	42671481	200527892	18	40635										
PREPL	0	genome.wustl.edu	37	chr2	44569611	44569611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tttgttatcaccaaaagtggCtcgatatacgtcatgacagc	8	9	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	44569611	44569611	C	G	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	missense	c.697	p.A233P	0.944	pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	82	0	0	107	27	20.15	-	-	-	G	44569611	C	G	44569611	3	3	406	1	0	0	0	0	1	0	0	0	12556	797	28	4	1526	4	PREPL	2	44569611	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	1898130	44569611	198629762	19	40636										
LMAN2L	0	genome.wustl.edu	37	chr2	97405748	97405748	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	catcgccgccactgctgccaCgacccaaggggtcccagagt	11	17	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	97405748	97405748	C	G	SNP	LMAN2L	ENST00000377079	human	ensembl	69_37n	-1	known	silent	c.30	p.S10	1.000	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN2L	HGNC	ENSG00000114988	29	0	0	25	5	16.67	-	-	-	G	97405748	C	G	97405748	2	3	406	1	0	0	0	0	0	0	0	1	8895	523	19	3		3	LMAN2L	2	97405748	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	52836137	97405748	145793625	20	40637										
SPAG16	0	genome.wustl.edu	37	chr2	214160797	214160797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aagatattcagaggtcaccaTaactgaagcatctgaagatg	9	7	3	5			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	214160797	214160797	T	C	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	missense	c.146	p.I49T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	46	0	0	44	20	31.25	-	-	-	C	214160797	T	C	214160797	3	2	406	1	0	0	0	0	1	0	0	0	15069	1406	49	5	152	5	SPAG16	2	214160797	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	116755049	214160797	29038576	21	40638										
CXCR1	0	genome.wustl.edu	37	chr2	219029617	219029617	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accaccttgcacaggaatgtGccaaaaatccagccattcac	6	14	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	219029617	219029617	G	C	SNP	CXCR1	ENST00000295683	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXC/IL8_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR1/IL8RA,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464	61	0	0	70	17	19.54	-	-	-	C	219029617	G	C	219029617	2	2	406	1	0	0	0	0	0	0	0	1	4121	1306	46	4		4	CXCR1	2	219029617	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	4868820	219029617	24169756	22	40639										
MFF	0	genome.wustl.edu	37	chr2	228217280	228217280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cacttctaatcctcatcatgAcaacgtcaggtaaattttga	5	10	4	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	228217280	228217280	A	G	SNP	MFF	ENST00000353339	human	ensembl	69_37n	1	known	missense	c.803	p.D268G	1.000	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958	77	0	0	86	17	16.35	-	-	-	G	228217280	A	G	228217280	3	3	406	1	0	0	0	0	1	0	0	0	9590	275	10	5	829	5	MFF	2	228217280	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	9187663	228217280	14982093	23	40640										
SLC16A14	0	genome.wustl.edu	37	chr2	230924032	230924032	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tttgtctttggggccatcttCaaaatcatacccaatatctt	5	10	5	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	230924032	230924032	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	missense	c.37	p.E13K	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	63	0	0	12	30	71.43	-	-	-	T	230924032	C	T	230924032	3	4	406	1	0	0	0	0	1	0	0	0	14496	835	29	2	1511	2	SLC16A14	2	230924032	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	2706752	230924032	12275341	24	40641										
AGXT	0	genome.wustl.edu	37	chr2	241810813	241810813	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgttcttaacccacggggaGtcgtccaccggcgtgctgca	12	14	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	2	241810813	241810813	G	A	SNP	AGXT	ENST00000307503	human	ensembl	69_37n	1	known	silent	c.471	p.E157	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT	HGNC	ENSG00000172482	17	0	0	5	4	44.44	-	-	-	A	241810813	G	A	241810813	2	1	406	1	0	0	0	0	0	0	0	1	404	1020	36	4		4	AGXT	2	241810813	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	10886781	241810813	1388560	25	40642										
SLC4A7	0	genome.wustl.edu	37	chr3	27493965	27493965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgagctagttttgccaagatCcacaacagcttcttcatcag	7	11	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	27493965	27493965	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.85	p.D29N	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	94	0	0	40	25	38.46	-	-	-	T	27493965	C	T	27493965	3	4	406	1	0	0	0	0	1	0	0	0	14747	855	30	2	3682	2	SLC4A7	3	27493965	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		27493965	170528465	26	40643										
ACOX2	0	genome.wustl.edu	37	chr3	58508254	58508254	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggaggtgtatgacagtggtcTggttccaagcctcgtgctgg	16	8	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	58508254	58508254	T	C	SNP	ACOX2	ENST00000302819	human	ensembl	69_37n	-1	known	missense	c.1601	p.Q534R	0.922	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306	57	0	0	21	16	43.24	-	-	-	C	58508254	T	C	58508254	3	2	406	1	0	0	0	0	1	0	0	0	159	1580	55	5	460	5	ACOX2	3	58508254	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	31014289	58508254	139514176	27	40644										
ARL13B	0	genome.wustl.edu	37	chr3	93755594	93755594	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gagtgcgaaaattacgagaaGaaaggtaagtagattaattt	11	2	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	93755594	93755594	G	C	SNP	ARL13B	ENST00000394222	human	ensembl	69_37n	1	known	missense	c.685	p.E229Q	1.000	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379	27	0	0	26	10	27.78	-	-	-	C	93755594	G	C	93755594	3	2	406	1	0	0	0	0	1	0	0	0	931	943	33	2	703	2	ARL13B	3	93755594	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	35247340	93755594	104266836	28	40645										
CBLB	0	genome.wustl.edu	37	chr3	105464837	105464837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aaatgccatgtaacctggatGtgtcacagctaagaaattcc	8	9	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	105464837	105464837	G	A	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.769	p.H257Y	1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	67	0	0	37	14	27.45	-	-	-	A	105464837	G	A	105464837	3	1	406	1	0	0	0	0	1	0	0	0	2726	1377	48	4	2235	4	CBLB	3	105464837	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	11709243	105464837	92557593	29	40646										
NR1I2	0	genome.wustl.edu	37	chr3	119533827	119533827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tccccatccttgctgccaggGacttgcccatcgaggaccag	10	16	0	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	119533827	119533827	G	A	SNP	NR1I2	ENST00000337940	human	ensembl	69_37n	1	known	missense	c.913	p.D305N	0.983	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852	12	0	0	8	10	55.56	-	-	-	A	119533827	G	A	119533827	3	1	406	1	0	0	0	0	1	0	0	0	10693	1188	41	2	935	2	NR1I2	3	119533827	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	14068990	119533827	78488603	30	40647										
ALDH1L1	0	genome.wustl.edu	37	chr3	125854388	125854388	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gggctcccacctgtacatcaGccggccccggtcccgcgcac	11	20	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	125854388	125854388	G	C	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	missense	c.1462	p.L488V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	31	0	0	49	13	20.97	-	-	-	C	125854388	G	C	125854388	3	2	406	1	0	0	0	0	1	0	0	0	494	962	34	4	1294	4	ALDH1L1	3	125854388	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	6320561	125854388	72168042	31	40648										
IGSF10	0	genome.wustl.edu	37	chr3	151166527	151166527	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tctgcctctatgttggtaaaAatgtcttcaggcttaggagc	10	8	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	151166527	151166527	A	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.1242	p.I414	0.979	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	81	0	0	130	20	13.33	-	-	-	T	151166527	A	T	151166527	2	4	406	1	0	0	0	0	0	0	0	1	7651	10	1	5		5	IGSF10	3	151166527	Silent	SNP	A	TCGA-AR-A251-01A-12D-A167-09	25312139	151166527	46855903	32	40649										
WDR49	0	genome.wustl.edu	37	chr3	167217996	167217996	+	Frame_Shift_Del	DEL	C	C	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cgctcttcctctggttctttCctaaagtatttctcagggtc							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	167217996	167217996	C	-	DEL	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	frame_shift_del	c.1920	p.E642fs	0.034	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	51	0	0	71	9	11.25	-	-	-	-	167217996	C	-	167217996	7	5	406	1	0	1	0	1	0	0	0	0	17399	854	30	0	181	0	WDR49	3	167217996	Frame_Shift_Del	DEL	C	TCGA-AR-A251-01A-12D-A167-09	16051469	167217996	30804434	33	40650										
MASP1	0	genome.wustl.edu	37	chr3	186969491	186969491	+	Frame_Shift_Del	DEL	G	G	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aagaaatacttggcttgggaGggctcgattttcccatggac							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	3	186969491	186969491	G	-	DEL	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	frame_shift_del	c.942	p.S315fs	0.073	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	54	0	0	13	2	13.33	-	-	-	-	186969491	G	-	186969491	7	5	406	1	0	1	0	1	0	0	0	0	9393	987	35	0	2142	0	MASP1	3	186969491	Frame_Shift_Del	DEL	G	TCGA-AR-A251-01A-12D-A167-09	19751495	186969491	11052939	34	40651										
SULT1B1	0	genome.wustl.edu	37	chr4	70599960	70599960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atgagactgaaacatccttgGcattacgagccagataaatc	8	9	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	4	70599960	70599960	G	A	SNP	SULT1B1	ENST00000310613	human	ensembl	69_37n	-1	known	missense	c.398	p.A133V	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1B1	HGNC	ENSG00000173597	40	0	0	16	17	51.52	-	-	-	A	70599960	G	A	70599960	3	1	406	1	0	0	0	0	1	0	0	0	15467	1203	42	4	508	4	SULT1B1	4	70599960	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09		70599960	120554316	35	40652										
DCHS2	0	genome.wustl.edu	37	chr4	155157392	155157392	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggtgatacaatagaataggtCaattctccatacggaccagc	9	9	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	4	155157392	155157392	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.7047	p.L2349	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	41	0	0	37	11	22.92	-	-	-	T	155157392	C	T	155157392	2	4	406	1	0	0	0	0	0	0	0	1	4319	825	29	2		2	DCHS2	4	155157392	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	84557432	155157392	35996884	36	40653										
FGG	0	genome.wustl.edu	37	chr4	155533009	155533009	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttcatatttcataatttcttCtaacattttcctggacttca	2	9	5	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	4	155533009	155533009	C	G	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	missense	c.349	p.E117Q	0.999	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	93	0	0	104	33	24.09	-	-	-	G	155533009	C	G	155533009	3	3	406	1	0	0	0	0	1	0	0	0	5916	922	32	2	1055	2	FGG	4	155533009	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	375617	155533009	35621267	37	40654										
NSUN2	0	genome.wustl.edu	37	chr5	6600147	6600147	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cctgctctctgtccctcagtCacgtcattgtctggctgtcc	8	16	5	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	6600147	6600147	C	G	SNP	NSUN2	ENST00000264670	human	ensembl	69_37n	-1	known	silent	c.2196	p.V732	0.004	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474	69	0	0	60	21	25.93	-	-	-	G	6600147	C	G	6600147	2	3	406	1	0	0	0	0	0	0	0	1	10751	813	29	2		2	NSUN2	5	6600147	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09		6600147	174315113	38	40655										
MARCH6	0	genome.wustl.edu	37	chr5	10394874	10394874	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gtttattttagatgctaggaCttgatggatcactagttttt	9	4	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	10394874	10394874	C	G	SNP	MARCH6	ENST00000274140	human	ensembl	69_37n	1	known	missense	c.838	p.L280V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495	127	0	0	107	35	24.65	-	-	-	G	10394874	C	G	10394874	3	3	406	1	0	0	0	0	1	0	0	0	9376	565	20	4	872	4	MARCH6	5	10394874	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	3794727	10394874	170520386	39	40656										
TRIO	0	genome.wustl.edu	37	chr5	14498736	14498736	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tcagcctcatcgtcggccagCctgagggtcctaggtaagca	12	13	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	14498736	14498736	C	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.8319	p.S2773R	0.966	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	48	0	0	29	8	21.62	-	-	-	A	14498736	C	A	14498736	3	1	406	1	0	0	0	0	1	0	0	0	16648	738	26	4	8529	4	TRIO	5	14498736	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	4103862	14498736	166416524	40	40657										
HMGCS1	0	genome.wustl.edu	37	chr5	43297126	43297126	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttctgccactgggcatggatCtttttgcagtagacagaata	10	8	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	43297126	43297126	C	A	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	missense	c.717	p.K239N	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	87	0	0	28	12	30	-	-	-	A	43297126	C	A	43297126	3	1	406	1	0	0	0	0	1	0	0	0	7283	912	32	2	873	2	HMGCS1	5	43297126	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	28798390	43297126	137618134	41	40658										
IL6ST	0	genome.wustl.edu	37	chr5	55264182	55264182	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cacacctcattttcttccccTcgttcacaatgcaactcaaa	2	16	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	55264182	55264182	T	G	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.413	p.E138A	0.311	pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	107	0	0	30	37	55.22	-	-	-	G	55264182	T	G	55264182	3	3	406	1	0	0	0	0	1	0	0	0	7757	1551	54	5	2395	5	IL6ST	5	55264182	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	11967056	55264182	125651078	42	40659										
VCAN	0	genome.wustl.edu	37	chr5	82807965	82807965	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cccagtaaattcaccttcgaGgaggctgcaaaagagtgtga	11	9	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	82807965	82807965	G	A	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	silent	c.792	p.E264	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	35	0	0	3	7	70	-	-	-	A	82807965	G	A	82807965	2	1	406	1	0	0	0	0	0	0	0	1	17235	991	35	4		4	VCAN	5	82807965	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	27543783	82807965	98107295	43	40660										
FAM172A	0	genome.wustl.edu	37	chr5	93294552	93294552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	catttataataagtcttctaGcccactgccctgccctgaca	5	14	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	93294552	93294552	G	A	SNP	FAM172A	ENST00000395965	human	ensembl	69_37n	-1	known	missense	c.497	p.A166V	1.000	pfam_Arb2_domain	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391	70	0	0	18	18	50	-	-	-	A	93294552	G	A	93294552	3	1	406	1	0	0	0	0	1	0	0	0	5532	971	34	4	777	4	FAM172A	5	93294552	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	10486587	93294552	87620708	44	40661										
ADAMTS19	0	genome.wustl.edu	37	chr5	128977608	128977608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggtgagaaagaatgcagaacCaagctagacccaccaatgga	11	9	0	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	128977608	128977608	C	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	silent	c.1809	p.T603	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	83	0	0	19	19	50	-	-	-	T	128977608	C	T	128977608	2	4	406	1	0	0	0	0	0	0	0	1	264	581	21	4		4	ADAMTS19	5	128977608	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	35683056	128977608	51937652	45	40662										
SEC24A	0	genome.wustl.edu	37	chr5	134032874	134032874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	attagccttggactgttctgGtcagcaagttgctgttgact	11	8	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	134032874	134032874	G	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.2045	p.G682V	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	117	0	0	24	53	68.83	-	-	-	T	134032874	G	T	134032874	3	4	406	1	0	0	0	0	1	0	0	0	14082	1261	44	4	2099	4	SEC24A	5	134032874	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	5055266	134032874	46882386	46	40663										
ARAP3	0	genome.wustl.edu	37	chr5	141051164	141051164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	agctggctatgatctgggtaCtgagggtggggcttccggaa	17	7	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	141051164	141051164	C	A	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.1827	p.Q609H	1.000	smart_ArfGAP,pfscan_ArfGAP	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	19	0	0	7	4	36.36	-	-	-	A	141051164	C	A	141051164	3	1	406	1	0	0	0	0	1	0	0	0	842	564	20	4	2895	4	ARAP3	5	141051164	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	7018290	141051164	39864096	47	40664										
GRIA1	0	genome.wustl.edu	37	chr5	153149761	153149761	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgtgtttgagaagatgtggAcatacatgaagtcagcagag	13	5	1	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	5	153149761	153149761	A	G	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.2086	p.T696A	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	66	0	0	34	17	33.33	-	-	-	G	153149761	A	G	153149761	3	3	406	1	0	0	0	0	1	0	0	0	6818	275	10	5	2106	5	GRIA1	5	153149761	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	12098597	153149761	27765499	48	40665										
HIST1H2BH	0	genome.wustl.edu	37	chr6	26252226	26252226	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cacgccgtgtccgagggcacTaaggccgtcaccaagtacac	11	15	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	26252226	26252226	T	G	SNP	HIST1H2BH	ENST00000356350	human	ensembl	69_37n	1	known	silent	c.348	p.T116	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459	36	0	0	43	12	21.82	-	-	-	G	26252226	T	G	26252226	2	3	406	1	0	0	0	0	0	0	0	1	7198	1509	53	5		5	HIST1H2BH	6	26252226	Silent	SNP	T	TCGA-AR-A251-01A-12D-A167-09		26252226	144862841	49	40666										
DNAH8	0	genome.wustl.edu	37	chr6	38854684	38854684	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tagcagcaatgatccaccctGgaggtggtcgaaatgatatt	11	8	0	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	38854684	38854684	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	nonsense	c.7726	p.G2576*	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	54	0	0	41	11	21.15	-	-	-	T	38854684	G	T	38854684	4	4	406	1	0	0	0	0	0	1	0	0	4642	1349	47	4	7936	4	DNAH8	6	38854684	Nonsense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	12602458	38854684	132260383	50	40667										
COL19A1	0	genome.wustl.edu	37	chr6	70646698	70646698	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcccagagcaggatggctttGgaaatattgcatcatcatgg	12	8	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	70646698	70646698	G	C	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.769	p.G257R	0.035	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	61	0	0	32	25	43.86	-	-	-	C	70646698	G	C	70646698	3	2	406	1	0	0	0	0	1	0	0	0	3706	1349	47	4	795	4	COL19A1	6	70646698	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	31792014	70646698	100468369	51	40668										
DDX43	0	genome.wustl.edu	37	chr6	74125920	74125920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tggaaagaaaaatggaaagaCctcaaggaaggcccaagaag	12	6	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	74125920	74125920	C	T	SNP	DDX43	ENST00000370336	human	ensembl	69_37n	1	known	missense	c.1918	p.P640S	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007	58	0	0	32	28	46.67	-	-	-	T	74125920	C	T	74125920	3	4	406	1	0	0	0	0	1	0	0	0	4394	507	18	4	1980	4	DDX43	6	74125920	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	3479222	74125920	96989147	52	40669										
L3MBTL3	0	genome.wustl.edu	37	chr6	130381217	130381217	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ataacaaaaatggattcaaaGttggcatgaaattagaaggc	9	4	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	130381217	130381217	G	T	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.796	p.V266F	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	73	0	0	66	16	19.51	-	-	-	T	130381217	G	T	130381217	3	4	406	1	0	0	0	0	1	0	0	0	8647	1029	36	4	826	4	L3MBTL3	6	130381217	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	56255297	130381217	40733850	53	40670										
PDE7B	0	genome.wustl.edu	37	chr6	136512854	136512854	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gggccacctcgcacacaacaAggcccagtggaagagcctgt	12	14	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	6	136512854	136512854	A	T	SNP	PDE7B	ENST00000308191	human	ensembl	69_37n	1	known	missense	c.1229	p.K410M	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7B	HGNC	ENSG00000171408	24	0	0	20	8	28.57	-	-	-	T	136512854	A	T	136512854	3	4	406	1	0	0	0	0	1	0	0	0	11725	72	3	5	1279	5	PDE7B	6	136512854	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	6131637	136512854	34602213	54	40671										
HDAC9	0	genome.wustl.edu	37	chr7	18767317	18767317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tctccaggactcactcttccCctgctgcctctgttttacct	5	17	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	7	18767317	18767317	C	T	SNP	HDAC9	ENST00000441542	human	ensembl	69_37n	1	known	missense	c.1846	p.P616S	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	39	0	0	30	9	23.08	-	-	-	T	18767317	C	T	18767317	3	4	406	1	0	0	0	0	1	0	0	0	7065	623	22	4	1943	4	HDAC9	7	18767317	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		18767317	140371346	55	40672										
ZCWPW1	0	genome.wustl.edu	37	chr7	100007160	100007160	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gaacactggacccagaccagAcattgacctgtgagaggaaa	11	10	0	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	7	100007160	100007160	A	C	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.759	p.C253W	0.074	pfscan_Znf_CW	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	34	0	0	54	8	12.9	-	-	-	C	100007160	A	C	100007160	3	2	406	1	0	0	0	0	1	0	0	0	17693	273	10	5	1227	5	ZCWPW1	7	100007160	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	81239843	100007160	59131503	56	40673										
GALNTL5	0	genome.wustl.edu	37	chr7	151664434	151664434	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accataatcatgtgagcagcTggcagaagaaaagccaggag	12	8	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	7	151664434	151664434	T	A	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	missense	c.103	p.W35R	0.000	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	54	0	0	33	14	29.79	-	-	-	A	151664434	T	A	151664434	3	1	406	1	0	0	0	0	1	0	0	0	6274	1580	55	5	105	5	GALNTL5	7	151664434	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	51657274	151664434	7474229	57	40674										
MYOM2	0	genome.wustl.edu	37	chr8	2054293	2054293	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctttttagctccaagctgtaCttaaagaatccggataagga	8	8	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	8	2054293	2054293	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	nonsense	c.2904	p.Y968*	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	80	0	0	41	12	22.64	-	-	-	G	2054293	C	G	2054293	4	3	406	1	0	0	0	0	0	1	0	0	10164	576	20	4	2990	4	MYOM2	8	2054293	Nonsense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		2054293	144309729	58	40675										
DOCK5	0	genome.wustl.edu	37	chr8	25240200	25240200	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgttttccagaaaaaaagggCctcattttatgagaacatca	7	7	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	8	25240200	25240200	C	G	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.4037	p.A1346G	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	87	0	0	41	17	28.81	-	-	-	G	25240200	C	G	25240200	3	3	406	1	0	0	0	0	1	0	0	0	4725	739	26	4	4195	4	DOCK5	8	25240200	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	23185907	25240200	121123822	59	40676										
CNGB3	0	genome.wustl.edu	37	chr8	87680252	87680252	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accctttgataatacctgtgTatgaatctatgctgtttgga	8	7	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	8	87680252	87680252	T	G	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.638	p.Y213S	0.944	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	105	0	0	147	49	25	-	-	-	G	87680252	T	G	87680252	3	3	406	1	0	0	0	0	1	0	0	0	3631	1638	57	5	1847	5	CNGB3	8	87680252	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	62440052	87680252	58683770	60	40677										
RAD54B	0	genome.wustl.edu	37	chr8	95470589	95470589	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	attgatttctctagtactttCttcactaggcagatttaaac	5	8	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	8	95470589	95470589	C	G	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.211	p.E71Q	0.019	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	64	0	0	139	25	15.24	-	-	-	G	95470589	C	G	95470589	3	3	406	1	0	0	0	0	1	0	0	0	13075	922	32	2	2573	2	RAD54B	8	95470589	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	7790337	95470589	50893433	61	40678										
KANK1	0	genome.wustl.edu	37	chr9	742357	742357	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cacggacacgtggagattgtCaagctgctgctggcccagcc	13	13	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	742357	742357	C	T	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	silent	c.3849	p.V1283	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	23	0	0	20	6	23.08	-	-	-	T	742357	C	T	742357	2	4	406	1	0	0	0	0	0	0	0	1	8030	813	29	2		2	KANK1	9	742357	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09		742357	140471074	62	40679										
RFX3	0	genome.wustl.edu	37	chr9	3346722	3346722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cacatactgcacctgagcggGatagacatgttgtacctgct	10	11	0	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	3346722	3346722	G	A	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	missense	c.160	p.P54S	1.000	pfam_RFX1_trans_act	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	48	0	0	50	9	15.25	-	-	-	A	3346722	G	A	3346722	3	1	406	1	0	0	0	0	1	0	0	0	13347	1174	41	2	2305	2	RFX3	9	3346722	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	2604365	3346722	137866709	63	40680										
FREM1	0	genome.wustl.edu	37	chr9	14792819	14792819	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgggtgagtcttcatctatGgctgaaagaatagcactgga	12	7	3	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	14792819	14792819	G	T	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	silent	c.3906	p.A1302	0.003	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	48	0	0	36	25	40.98	-	-	-	T	14792819	G	T	14792819	2	4	406	1	0	0	0	0	0	0	0	1	6093	1335	47	4		4	FREM1	9	14792819	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	11446097	14792819	126420612	64	40681										
TLN1	0	genome.wustl.edu	37	chr9	35713254	35713254	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgggcgatggctgagctcacGgctttggtgctgttgcccag	16	10	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	35713254	35713254	G	C	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	silent	c.3291	p.A1097	0.002	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	35	0	0	11	8	42.11	-	-	-	C	35713254	G	C	35713254	2	2	406	1	0	0	0	0	0	0	0	1	16042	1103	39	3		3	TLN1	9	35713254	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	20920435	35713254	105500177	65	40682										
ZNF462	0	genome.wustl.edu	37	chr9	109688792	109688792	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cccactaccaacgaatgcacCcatacattaaattcagcttt	3	14	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	109688792	109688792	C	G	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.2599	p.P867A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	33	0	0	21	17	44.74	-	-	-	G	109688792	C	G	109688792	3	3	406	1	0	0	0	0	1	0	0	0	18022	623	22	4	2605	4	ZNF462	9	109688792	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	73975538	109688792	31524639	66	40683										
ST6GALNAC6	0	genome.wustl.edu	37	chr9	130648843	130648843	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgggcggaggctgcttctcCtctgaccctcctgaggtccc	12	16	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	130648843	130648843	C	G	SNP	ST6GALNAC6	ENST00000373142	human	ensembl	69_37n	-1	putative	missense	c.1033	p.G345R	0.050	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	29	0	0	14	11	44	-	-	-	G	130648843	C	G	130648843	3	3	406	1	0	0	0	0	1	0	0	0	15319	696	24	4		4	ST6GALNAC6	9	130648843	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	20960051	130648843	10564588	67	40684										
CARD9	0	genome.wustl.edu	37	chr9	139264848	139264848	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcctgccgccagtcctcctcCagtacctggatgtaggggct	12	15	0	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	9	139264848	139264848	C	A	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	silent	c.849	p.L283	1.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	27	0	0	19	4	17.39	-	-	-	A	139264848	C	A	139264848	2	1	406	1	0	0	0	0	0	0	0	1	2677	581	21	4		4	CARD9	9	139264848	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	8616005	139264848	1948583	68	40685										
GPR158	0	genome.wustl.edu	37	chr10	25887795	25887795	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgggagagccaaggccagtcCattttggaagatgagaagct	14	7	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	10	25887795	25887795	C	G	SNP	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	silent	c.3240	p.S1080	0.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	27	0	0	48	8	14.29	-	-	-	G	25887795	C	G	25887795	2	3	406	1	0	0	0	0	0	0	0	1	6713	581	21	4		4	GPR158	10	25887795	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09		25887795	109646952	69	40686										
SVIL	0	genome.wustl.edu	37	chr10	29812859	29812859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggtcaagaggtggctttgtgCgaagatctccggcatacatt	13	8	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	10	29812859	29812859	C	T	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.2684	p.R895H	0.424	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	51	0	0	9	47	83.93	-	-	-	T	29812859	C	T	29812859	3	4	406	1	0	0	0	0	1	0	0	0	15512	768	27	1	4056	1	SVIL	10	29812859	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	3925064	29812859	105721888	70	40687										
CTNNA3	0	genome.wustl.edu	37	chr10	68979558	68979558	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgaacaaattgaatgcaagAggggagagttctccttcagt	11	7	2	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	10	68979558	68979558	A	T	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	missense	c.650	p.L217H	0.982	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	40	0	0	34	9	20.93	-	-	-	T	68979558	A	T	68979558	3	4	406	1	0	0	0	0	1	0	0	0	4046	304	11	5	2089	5	CTNNA3	10	68979558	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	39166699	68979558	66555189	71	40688										
C10orf12	0	genome.wustl.edu	37	chr10	98741410	98741410	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcaagagaaccatcttcactCtctgggaagaaataaggtgg	11	8	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	10	98741410	98741410	C	G	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.263	p.S88C	0.834	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	51	0	0	10	27	72.97	-	-	-	G	98741410	C	G	98741410	3	3	406	1	0	0	0	0	1	0	0	0	1599	913	32	2	265	2	C10orf12	10	98741410	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	29761852	98741410	36793337	72	40689										
OR51D1	0	genome.wustl.edu	37	chr11	4661473	4661473	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	catgcttctgtgctgacaggGtgtactgtggccaagattgg	14	8	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	4661473	4661473	G	T	SNP	OR51D1	ENST00000357605	human	ensembl	69_37n	1	known	silent	c.453	p.G151	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51D1	HGNC	ENSG00000197428	73	0	0	17	21	55.26	-	-	-	T	4661473	G	T	4661473	2	4	406	1	0	0	0	0	0	0	0	1	11166	1248	44	4		4	OR51D1	11	4661473	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09		4661473	130345043	73	40690										
OR51F1	0	genome.wustl.edu	37	chr11	4790519	4790519	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caatgcatggtgtatctattCcagtggtcaggatgagatca	11	7	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	4790519	4790519	C	A	SNP	OR51F1	ENST00000380383	human	ensembl	69_37n	-1	known	missense	c.650	p.G217V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51F1	HGNC	ENSG00000188069	63	0	0	16	16	50	-	-	-	A	4790519	C	A	4790519	3	1	406	1	0	0	0	0	1	0	0	0	11169	855	30	2	312	2	OR51F1	11	4790519	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	129046	4790519	130215997	74	40691										
KCNJ11	0	genome.wustl.edu	37	chr11	17408655	17408655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttgccaaacttggagtagtcCacagagtaacgtccgtcctc	9	12	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	17408655	17408655	C	T	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	silent	c.984	p.V328	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	53	0	0	24	18	42.86	-	-	-	T	17408655	C	T	17408655	2	4	406	1	0	0	0	0	0	0	0	1	8099	581	21	4		4	KCNJ11	11	17408655	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	12618136	17408655	117597861	75	40692										
TTC17	0	genome.wustl.edu	37	chr11	43427136	43427136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctagagtccctgttggtgggGaattgccaacgtattttctg	12	8	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	43427136	43427136	G	A	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.1552	p.E518K	0.998	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	48	0	0	46	9	16.36	-	-	-	A	43427136	G	A	43427136	3	1	406	1	0	0	0	0	1	0	0	0	16781	1175	41	2	1598	2	TTC17	11	43427136	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	26018481	43427136	91579380	76	40693										
OR4A47	0	genome.wustl.edu	37	chr11	48511007	48511007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tcttatggtgtcatcttgcaCtctttaaagaaccttagtca	6	9	5	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	48511007	48511007	C	A	SNP	OR4A47	ENST00000446524	human	ensembl	69_37n	1	known	missense	c.663	p.H221Q	0.109	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388	48	0	0	24	15	38.46	-	-	-	A	48511007	C	A	48511007	3	1	406	1	0	0	0	0	1	0	0	0	11115	564	20	4	665	4	OR4A47	11	48511007	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	5083871	48511007	86495509	77	40694										
OR4C15	0	genome.wustl.edu	37	chr11	55322321	55322321	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgatcgttatgtggccatttGcaagcccttgcattactctt	8	10	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	55322321	55322321	G	C	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	missense	c.539	p.C180S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	46	0	0	50	17	25.37	-	-	-	C	55322321	G	C	55322321	3	2	406	1	0	0	0	0	1	0	0	0	11121	1319	46	4	541	4	OR4C15	11	55322321	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	6811314	55322321	79684195	78	40695										
OR5A2	0	genome.wustl.edu	37	chr11	59190015	59190015	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctttaaacaaagtgtatgggAtatgaggactgtgtaaagca	11	4	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	59190015	59190015	A	T	SNP	OR5A2	ENST00000302040	human	ensembl	69_37n	-1	known	missense	c.412	p.S138T	0.749	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A2	HGNC	ENSG00000172324	35	0	0	19	14	42.42	-	-	-	T	59190015	A	T	59190015	3	4	406	1	0	0	0	0	1	0	0	0	11213	333	12	5	564	5	OR5A2	11	59190015	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	3867694	59190015	75816501	79	40696										
OR4D9	0	genome.wustl.edu	37	chr11	59283150	59283150	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgcatttcgtgccctgcatCtatgtctatgcccggccctt	8	15	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	59283150	59283150	C	G	SNP	OR4D9	ENST00000329328	human	ensembl	69_37n	1	known	missense	c.765	p.I255M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742	79	0	0	63	24	27.59	-	-	-	G	59283150	C	G	59283150	3	3	406	1	0	0	0	0	1	0	0	0	11132	903	32	2	767	2	OR4D9	11	59283150	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	93135	59283150	75723366	80	40697										
PATL1	0	genome.wustl.edu	37	chr11	59434423	59434423	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tcttcatcttcatccagaggAcaatcctccaaagactaaaa	4	12	4	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	59434423	59434423	A	C	SNP	PATL1	ENST00000300146	human	ensembl	69_37n	-1	known	missense	c.30	p.C10W	1.000	NULL	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889	63	0	0	60	18	23.08	-	-	-	C	59434423	A	C	59434423	3	2	406	1	0	0	0	0	1	0	0	0	11548	273	10	5	2354	5	PATL1	11	59434423	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	151273	59434423	75572093	81	40698										
AHNAK	0	genome.wustl.edu	37	chr11	62287791	62287791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gccctttagtttcgcatctgGaccttcgatattcacatcag	7	12	3	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	62287791	62287791	G	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.14098	p.P4700A	0.995	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	70	0	0	85	19	18.27	-	-	-	C	62287791	G	C	62287791	3	2	406	1	0	0	0	0	1	0	0	0	414	1174	41	2	3694	2	AHNAK	11	62287791	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	2853368	62287791	72718725	82	40699										
PYGM	0	genome.wustl.edu	37	chr11	64517909	64517909	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aaagatgaagaagttttcctCtcccgcctcttctgccatct	6	13	4	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	64517909	64517909	C	G	SNP	PYGM	ENST00000164139	human	ensembl	69_37n	-1	known	missense	c.2116	p.E706Q	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	61	0	0	39	7	15.22	-	-	-	G	64517909	C	G	64517909	3	3	406	1	0	0	0	0	1	0	0	0	12945	922	32	2	428	2	PYGM	11	64517909	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	2230118	64517909	70488607	83	40700										
ATG2A	0	genome.wustl.edu	37	chr11	64674273	64674273	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccgtgcacagcctccagccgCttcccaccctcatcctgcag	7	21	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	64674273	64674273	C	A	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	missense	c.2847	p.K949N	0.915	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	26	0	0	13	9	40.91	-	-	-	A	64674273	C	A	64674273	3	1	406	1	0	0	0	0	1	0	0	0	1097	796	28	4	3057	4	ATG2A	11	64674273	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	156364	64674273	70332243	84	40701										
PPFIA1	0	genome.wustl.edu	37	chr11	70171060	70171060	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcaggcgtgtccagcgaagtGgaagtgctgaaagcactgaa	15	8	0	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	70171060	70171060	G	T	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	silent	c.474	p.V158	0.884	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	35	0	0	19	5	20.83	-	-	-	T	70171060	G	T	70171060	2	4	406	1	0	0	0	0	0	0	0	1	12382	1335	47	4		4	PPFIA1	11	70171060	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	5496787	70171060	64835456	85	40702										
DYNC2H1	0	genome.wustl.edu	37	chr11	103128341	103128341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atctcttgatccataggaacGggatgcctatctccccctgg	9	13	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	103128341	103128341	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.10487	p.R3496Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	76	0	0	33	39	54.17	-	-	-	A	103128341	G	A	103128341	3	1	406	1	0	0	0	0	1	0	0	0	4881	1116	39	1	10765	1	DYNC2H1	11	103128341	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	32957281	103128341	31878175	86	40703										
GRIA4	0	genome.wustl.edu	37	chr11	105845179	105845179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gaagagaatgaaggtggcaaAgagtgcacagacttttaacc	12	6	0	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	105845179	105845179	A	G	SNP	GRIA4	ENST00000393127	human	ensembl	69_37n	1	known	missense	c.2552	p.K851R	0.999	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	86	0	0	31	40	56.34	-	-	-	G	105845179	A	G	105845179	3	3	406	1	0	0	0	0	1	0	0	0	6821	72	3	5	2766	5	GRIA4	11	105845179	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	2716838	105845179	29161337	87	40704										
GRAMD1B	0	genome.wustl.edu	37	chr11	123489814	123489814	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accccttcttctaccccacaGgttaccccagtctcagacag	5	18	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	123489814	123489814	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	splice_site	c.2010-1	e19-1	1.000	-	-	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	27	0	0	3	26	89.66	-	-	-	A	123489814	G	A	123489814	5	1	406	1	0	0	0	0	0	0	1	0	6799	1014	35	4	2083	4	GRAMD1B	11	123489814	Splice_Site	SNP	G	TCGA-AR-A251-01A-12D-A167-09	17644635	123489814	11516702	88	40705										
OR8B8	0	genome.wustl.edu	37	chr11	124310048	124310048	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgagcattgcccttttctcAggagaatgcatttttgttca	8	9	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	11	124310048	124310048	A	G	SNP	OR8B8	ENST00000328064	human	ensembl	69_37n	-1	putative	nonstop	c.934	p.*312R	0.946	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125	74	0	0	53	13	19.7	-	-	-	G	124310048	A	G	124310048	4	3	406	1	0	0	0	0	0	0	0	0	11303	202	7	5	4	5	OR8B8	11	124310048	Nonstop_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	820234	124310048	10696468	89	40706										
A2ML1	0	genome.wustl.edu	37	chr12	8988187	8988187	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgtccttccaactggcaccaGaggcaatgctgggcacctac	10	14	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	8988187	8988187	G	A	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.568	p.E190K	0.996	pfam_A2M_N	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	53	0	0	28	12	30	-	-	-	A	8988187	G	A	8988187	3	1	406	1	0	0	0	0	1	0	0	0	5	943	33	2	590	2	A2ML1	12	8988187	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09		8988187	124863708	90	40707										
GYS2	0	genome.wustl.edu	37	chr12	21693464	21693464	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aacttagtcagctgattgcaAgaatcatctggagaacggaa	10	7	3	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	21693464	21693464	A	C	SNP	GYS2	ENST00000261195	human	ensembl	69_37n	-1	known	silent	c.1689	p.S563	0.892	pfam_Glycogen_synth,pfam_Glyco_trans_1	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713	51	0	0	32	8	20	-	-	-	C	21693464	A	C	21693464	2	2	406	1	0	0	0	0	0	0	0	1	6964	59	3	5		5	GYS2	12	21693464	Silent	SNP	A	TCGA-AR-A251-01A-12D-A167-09	12705277	21693464	112158431	91	40708										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100451948	100451948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tggtttcatttcctttactaGttaaagtacttgaaagtatg	7	5	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	100451948	100451948	G	T	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.3107	p.T1036N	0.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	43	0	0	17	24	58.54	-	-	-	T	100451948	G	T	100451948	3	4	406	1	0	0	0	0	1	0	0	0	17066	1029	36	4	1319	4	UHRF1BP1L	12	100451948	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	78758484	100451948	33399947	92	40709										
BTBD11	0	genome.wustl.edu	37	chr12	108006618	108006618	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggcgatggttcagatgctgcTggatgccggagctgacctga	16	9	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	108006618	108006618	T	G	SNP	BTBD11	ENST00000280758	human	ensembl	69_37n	1	known	missense	c.1871	p.L624R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	42	0	0	22	9	29.03	-	-	-	G	108006618	T	G	108006618	3	3	406	1	0	0	0	0	1	0	0	0	1547	1580	55	5	1998	5	BTBD11	12	108006618	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	7554670	108006618	25845277	93	40710										
CMKLR1	0	genome.wustl.edu	37	chr12	108685751	108685751	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cattgaccaggcgagagaagAgggccaccttgaacttcttg	12	10	1	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	108685751	108685751	A	T	SNP	CMKLR1	ENST00000312143	human	ensembl	69_37n	-1	known	missense	c.989	p.L330H	1.000	prints_DEZorph_rcpt,prints_Anphylx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_DEZorph_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	61	0	0	9	25	73.53	-	-	-	T	108685751	A	T	108685751	3	4	406	1	0	0	0	0	1	0	0	0	3609	304	11	5	136	5	CMKLR1	12	108685751	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	679133	108685751	25166144	94	40711										
GCN1L1	0	genome.wustl.edu	37	chr12	120602277	120602277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ggtgcggctcaggagcaccgCcaccagagcccggtggtact	15	14	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	12	120602277	120602277	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.1711	p.A571T	0.880	pfam_DUF3554,superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	26	0	0	15	5	25	-	-	-	T	120602277	C	T	120602277	3	4	406	1	0	0	0	0	1	0	0	0	6349	739	26	4	6468	4	GCN1L1	12	120602277	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	11916526	120602277	13249618	95	40712										
SACS	0	genome.wustl.edu	37	chr13	23907783	23907783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cactgatggatttatagcacGgaagtgactttagaattttt	9	5	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	13	23907783	23907783	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.10232	p.P3411L	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	44	0	0	27	4	12.9	-	-	-	A	23907783	G	A	23907783	3	1	406	1	0	0	0	0	1	0	0	0	13890	1116	39	1	3511	1	SACS	13	23907783	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09		23907783	91262095	96	40713										
MYCBP2	0	genome.wustl.edu	37	chr13	77671823	77671823	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atgttgtaaagttaagggaaGaggagacttagacttcattg	12	3	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	13	77671823	77671823	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.9466	p.L3156V	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	54	0	0	53	7	11.67	-	-	-	C	77671823	G	C	77671823	3	2	406	1	0	0	0	0	1	0	0	0	10090	942	33	2	4682	2	MYCBP2	13	77671823	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	53764040	77671823	37498055	97	40714										
DZIP1	0	genome.wustl.edu	37	chr13	96234512	96234512	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	acatctgaagtgtcgctccaAtcagtcacagttactaagct	7	11	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	13	96234512	96234512	A	G	SNP	DZIP1	ENST00000347108	human	ensembl	69_37n	-1	known	silent	c.2580	p.D860	0.065	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874	94	0	0	40	53	56.99	-	-	-	G	96234512	A	G	96234512	2	3	406	1	0	0	0	0	0	0	0	1	4898	98	4	5		5	DZIP1	13	96234512	Silent	SNP	A	TCGA-AR-A251-01A-12D-A167-09	18562689	96234512	18935366	98	40715										
METTL3	0	genome.wustl.edu	37	chr14	21968764	21968764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atcccagggtgggtcagccaTcacaactgcaaacttgccca	9	14	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	14	21968764	21968764	T	C	SNP	METTL3	ENST00000298717	human	ensembl	69_37n	-1	known	missense	c.1177	p.M393V	1.000	pfam_MT-A70-like,pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL3	HGNC	ENSG00000165819	43	0	0	26	14	35	-	-	-	C	21968764	T	C	21968764	3	2	406	1	0	0	0	0	1	0	0	0	9572	1435	50	5	589	5	METTL3	14	21968764	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09		21968764	85380776	99	40716										
FANCM	0	genome.wustl.edu	37	chr14	45606394	45606394	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccgctgctgaaataaagtgtTtagttattgatgaagctcat	9	6	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	14	45606394	45606394	T	A	SNP	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	missense	c.631	p.L211I	0.993	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	53	0	0	21	10	32.26	-	-	-	A	45606394	T	A	45606394	3	1	406	1	0	0	0	0	1	0	0	0	5717	1838	64	5	637	5	FANCM	14	45606394	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	23637630	45606394	61743146	100	40717										
SYNE2	0	genome.wustl.edu	37	chr14	64469831	64469831	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gctttaaagatgctgaacggGgtgatgacacctcctgtgaa	12	8	0	5			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	14	64469831	64469831	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.4180	p.G1394C	0.639	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	37	0	0	4	16	80	-	-	-	T	64469831	G	T	64469831	3	4	406	1	0	0	0	0	1	0	0	0	15538	1232	43	4	4294	4	SYNE2	14	64469831	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	18863437	64469831	42879709	101	40718										
SPTB	0	genome.wustl.edu	37	chr14	65253616	65253616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cttctgctcagggtgcgagtCcatcagctgctgggactcac	12	13	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	14	65253616	65253616	C	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.3067	p.D1023N	0.866	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	38	0	0	5	26	83.87	-	-	-	T	65253616	C	T	65253616	3	4	406	1	0	0	0	0	1	0	0	0	15209	855	30	2	4072	2	SPTB	14	65253616	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	783785	65253616	42095924	102	40719										
GABRG3	0	genome.wustl.edu	37	chr15	27777986	27777986	+	Frame_Shift_Del	DEL	C	C	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttttccccacgtccttcctgCtctttaacctggtctactgg							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	15	27777986	27777986	C	-	DEL	GABRG3	ENST00000333743	human	ensembl	69_37n	1	known	frame_shift_del	c.1363	p.L455fs	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	33	0	0	7	12	63.16	-	-	-	-	27777986	C	-	27777986	7	5	406	1	0	1	0	1	0	0	0	0	6222	797	28	0	1401	0	GABRG3	15	27777986	Frame_Shift_Del	DEL	C	TCGA-AR-A251-01A-12D-A167-09		27777986	74753406	103	40720										
VPS13C	0	genome.wustl.edu	37	chr15	62219354	62219354	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cgagcactttcagatctctcAcagaagcttccatcatctgt	6	13	5	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	15	62219354	62219354	A	C	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.6452	p.V2151G	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	41	0	0	31	6	16.22	-	-	-	C	62219354	A	C	62219354	3	2	406	1	0	0	0	0	1	0	0	0	17288	159	6	5	4973	5	VPS13C	15	62219354	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	34441368	62219354	40312038	104	40721										
BLM	0	genome.wustl.edu	37	chr15	91306223	91306223	+	Missense_Mutation	SNP	G	G	T													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	agcacaaaatttagcatccaGaaatctgaaacatgagcgtt							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	15	91306223	91306223	G	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.1910	p.R637I	0.998	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	55	0	0	51	25	32.89	-	-	-	T	91306223	G	T	91306223	3	4	406	1	0	0	0	0	1	0	0	0	1450	942	33	2	1936	2	BLM	15	91306223	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	29086869	91306223	11225169	105	40722	334	2								
BLM	0	genome.wustl.edu	37	chr15	91306224	91306224	+	Silent	SNP	A	A	G													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcacaaaatttagcatccagAaatctgaaacatgagcgttt							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	15	91306224	91306224	A	G	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	silent	c.1911	p.R637	1.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	56	0	0	49	25	33.78	-	-	-	G	91306224	A	G	91306224	2	3	406	1	0	0	0	0	0	0	0	1	1450	243	9	5		5	BLM	15	91306224	Silent	SNP	A	TCGA-AR-A251-01A-12D-A167-09	1	91306224	11225168	106	40723	334	2								
ABCA3	0	genome.wustl.edu	37	chr16	2354098	2354098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cagcacctgcccgaagcagaAgtcgtcgtccacgttgacgg	12	14	0	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	2354098	2354098	A	G	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.1339	p.F447L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	30	0	0	4	17	80.95	-	-	-	G	2354098	A	G	2354098	3	3	406	1	0	0	0	0	1	0	0	0	33	72	3	5	3863	5	ABCA3	16	2354098	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09		2354098	88000655	107	40724										
RSL1D1	0	genome.wustl.edu	37	chr16	11935823	11935823	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aatgttttcaatgatgtgctCaatttgcattccaacgtgac	7	8	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	11935823	11935823	C	T	SNP	RSL1D1	ENST00000571133	human	ensembl	69_37n	-1	known	missense	c.670	p.E224K	0.220	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	-	no_errors	RSL1D1	HGNC	ENSG00000171490	60	0	0	51	12	19.05	-	-	-	T	11935823	C	T	11935823	3	4	406	1	0	0	0	0	1	0	0	0	13786	835	29	2	818	2	RSL1D1	16	11935823	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	9581725	11935823	78418930	108	40725										
ABCC1	0	genome.wustl.edu	37	chr16	16150074	16150074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aaggtgctggccatcaggcaGgaggagctgaaggtgctgaa	17	7	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	16150074	16150074	G	A	SNP	ABCC1	ENST00000572882	human	ensembl	69_37n	1	novel	missense	c.1294	p.G432R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCC1	HGNC	ENSG00000103222	44	0	0	31	9	22.5	-	-	-	A	16150074	G	A	16150074	3	1	406	1	0	0	0	0	1	0	0	0	49	991	35	4	1645	4	ABCC1	16	16150074	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	4214251	16150074	74204679	109	40726										
SMG1	0	genome.wustl.edu	37	chr16	18828730	18828730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aacgccgcatccaggtttaaGgcttctgcagttcttgttcg	10	11	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	18828730	18828730	G	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.9960	p.A3320	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	47	0	0	36	19	34.55	-	-	-	A	18828730	G	A	18828730	2	1	406	1	0	0	0	0	0	0	0	1	14884	987	35	4		4	SMG1	16	18828730	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	2678656	18828730	71526023	110	40727										
OTOA	0	genome.wustl.edu	37	chr16	21716582	21716582	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccagatgatcaagtgcagccAcctgaggggcttccaggctg	13	12	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	21716582	21716582	A	T	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.1115	p.H372L	0.200	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	39	0	0	32	11	25.58	-	-	-	T	21716582	A	T	21716582	3	4	406	1	0	0	0	0	1	0	0	0	11375	159	6	5	1161	5	OTOA	16	21716582	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	2887852	21716582	68638171	111	40728										
VWA3A	0	genome.wustl.edu	37	chr16	22128179	22128179	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	acctacagatgcgatgatcaGatgccccctgtgagtgcccg	11	13	1	4			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	22128179	22128179	G	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.915	p.Q305H	0.086	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	62	0	0	31	16	34.04	-	-	-	T	22128179	G	T	22128179	3	4	406	1	0	0	0	0	1	0	0	0	17337	933	33	2	953	2	VWA3A	16	22128179	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	411597	22128179	68226574	112	40729										
BCKDK	0	genome.wustl.edu	37	chr16	31120644	31120644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tccgggcccgctcgacgtcgGccaccgacacacaccacgtg	11	19	0	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	31120644	31120644	G	T	SNP	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	missense	c.100	p.A34S	0.998	NULL	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	12	0	0	6	8	57.14	-	-	-	T	31120644	G	T	31120644	3	4	406	1	0	0	0	0	1	0	0	0	1365	1203	42	4	102	4	BCKDK	16	31120644	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	8992465	31120644	59234109	113	40730										
ZNF423	0	genome.wustl.edu	37	chr16	49671283	49671283	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cttggacttcttgctgtgggCcagtggaatgttcttgtggt	14	7	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	49671283	49671283	C	A	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.1780	p.A594S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	76	0	0	14	18	56.25	-	-	-	A	49671283	C	A	49671283	3	1	406	1	0	0	0	0	1	0	0	0	17994	739	26	4	2094	4	ZNF423	16	49671283	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	18550639	49671283	40683470	114	40731										
FAM65A	0	genome.wustl.edu	37	chr16	67575419	67575419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ctgtttgccgccctgccccaGgttgtggctgtggatatcaa	12	12	1	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	16	67575419	67575419	G	T	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.948	p.Q316H	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	41	0	0	7	11	61.11	-	-	-	T	67575419	G	T	67575419	3	4	406	1	0	0	0	0	1	0	0	0	5644	991	35	4	926	4	FAM65A	16	67575419	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	17904136	67575419	22779334	115	40732										
TP53	0	genome.wustl.edu	37	chr17	7577085	7577085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cttgcggagattctcttcctCtgtgcgccggtctctcccag	10	15	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	7577085	7577085	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.853	p.E285K	0.995	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	53	0	0	15	54	78.26	-	-	-	T	7577085	C	T	7577085	3	4	406	1	0	0	0	0	1	0	0	0	16477	922	32	2	433	2	TP53	17	7577085	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		7577085	73618125	116	40733										
ZNF286A	0	genome.wustl.edu	37	chr17	15619893	15619893	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tcttttagccacagagctaaTttaactaaacaccagagaac	5	10	1	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	15619893	15619893	T	G	SNP	ZNF286A	ENST00000413242	human	ensembl	69_37n	1	known	missense	c.855	p.N285K	0.071	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC005324.8-001	Clone_based_vega_gene	ENSG00000255104	38	0	0	13	52	80	-	-	-	G	15619893	T	G	15619893	3	3	406	1	0	0	0	0	1	0	0	0	17919	1490	52	5	873	5	ZNF286A	17	15619893	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	8042808	15619893	65575317	117	40734										
NCOR1	0	genome.wustl.edu	37	chr17	15978996	15978996	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcctctgttggtatgccagtCtggggcagagccggggtgcc	17	11	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	15978996	15978996	C	G	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.3522	p.Q1174H	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	45	0	0	10	48	82.76	-	-	-	G	15978996	C	G	15978996	3	3	406	1	0	0	0	0	1	0	0	0	10307	912	32	2	3880	2	NCOR1	17	15978996	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	359103	15978996	65216214	118	40735										
SPAG5	0	genome.wustl.edu	37	chr17	26905075	26905075	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tagtttttctaactccttgtCagagcgccgaaggttctcct	8	11	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	26905075	26905075	C	G	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.3463	p.D1155H	1.000	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	62	0	0	53	16	23.19	-	-	-	G	26905075	C	G	26905075	3	3	406	1	0	0	0	0	1	0	0	0	15072	826	29	2	126	2	SPAG5	17	26905075	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	10926079	26905075	54290135	119	40736										
MYO1D	0	genome.wustl.edu	37	chr17	30981576	30981576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aacatttccacggctgcaacCtttgccctgacctggggcag	10	14	0	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	30981576	30981576	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	69_37n	-1	known	silent	c.2409	p.K803	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658	35	0	0	17	25	59.52	-	-	-	T	30981576	C	T	30981576	2	4	406	1	0	0	0	0	0	0	0	1	10143	680	24	4		4	MYO1D	17	30981576	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	4076501	30981576	50213634	120	40737										
GPATCH8	0	genome.wustl.edu	37	chr17	42483296	42483296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aaaatatcctcaccattcagCttgttttctttgctctgcca	4	12	4	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	42483296	42483296	C	A	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	missense	c.616	p.A206S	0.993	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	54	0	0	13	40	75.47	-	-	-	A	42483296	C	A	42483296	3	1	406	1	0	0	0	0	1	0	0	0	6644	797	28	4	3900	4	GPATCH8	17	42483296	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	11501720	42483296	38711914	121	40738										
SCRN2	0	genome.wustl.edu	37	chr17	45916933	45916933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atcctccaggcagttgccccCctgcccatagtgctccagta	8	17	0	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	45916933	45916933	C	T	SNP	SCRN2	ENST00000290216	human	ensembl	69_37n	-1	known	missense	c.433	p.G145R	1.000	pfam_Peptidase_C69,pfam_Pept_C45_AAT	pfam_Peptidase_C69,pfam_Pept_C45_AAT	-	no_errors	SCRN2	HGNC	ENSG00000141295	26	0	0	7	23	76.67	-	-	-	T	45916933	C	T	45916933	3	4	406	1	0	0	0	0	1	0	0	0	14027	623	22	4	882	4	SCRN2	17	45916933	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	3433637	45916933	35278277	122	40739										
KCNJ16	0	genome.wustl.edu	37	chr17	68128271	68128271	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	atcatattatcaatgcggacGcaaaatacccaggctacccg	7	12	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	68128271	68128271	G	T	SNP	KCNJ16	ENST00000283936	human	ensembl	69_37n	1	known	missense	c.43	p.A15S	0.024	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ16	HGNC	ENSG00000153822	48	0	0	8	28	77.78	-	-	-	T	68128271	G	T	68128271	3	4	406	1	0	0	0	0	1	0	0	0	8104	1087	38	3	45	3	KCNJ16	17	68128271	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	22211338	68128271	13066939	123	40740										
RHBDF2	0	genome.wustl.edu	37	chr17	74474958	74474958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tcttgcggcgtggcaggtggGagtagccagaacggacactg	17	9	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	17	74474958	74474958	G	T	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.689	p.S230Y	0.540	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	37	0	0	45	23	33.82	-	-	-	T	74474958	G	T	74474958	3	4	406	1	0	0	0	0	1	0	0	0	13404	1174	41	2	1937	2	RHBDF2	17	74474958	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	6346687	74474958	6720252	124	40741										
AP3D1	0	genome.wustl.edu	37	chr19	2127191	2127191	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cattcatagaggagagacatGgcagacgtgctaaggaaagg	14	6	1	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	2127191	2127191	G	C	SNP	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	silent	c.816	p.A272	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	30	0	0	35	6	14.63	-	-	-	C	2127191	G	C	2127191	2	2	406	1	0	0	0	0	0	0	0	1	747	1335	47	4		4	AP3D1	19	2127191	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09		2127191	57001792	125	40742										
INSR	0	genome.wustl.edu	37	chr19	7152746	7152746	+	Frame_Shift_Del	DEL	A	A	-													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caagtcctgacctggggacgAaaaccacgttgtgcaggtaa							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	7152746	7152746	A	-	DEL	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	frame_shift_del	c.2222	p.F741fs	0.988	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	42	0	0	20	4	16.67	-	-	-	-	7152746	A	-	7152746	7	5	406	1	0	1	0	1	0	0	0	0	7827	246	9	0	1978	0	INSR	19	7152746	Frame_Shift_Del	DEL	A	TCGA-AR-A251-01A-12D-A167-09	5025555	7152746	51976237	126	40743										
DNMT1	0	genome.wustl.edu	37	chr19	10260544	10260544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caaaccttgctagatacagcGgttttgaggaatcatctgga	10	8	2	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	10260544	10260544	G	A	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.2366	p.P789L	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	49	0	0	22	41	65.08	-	-	-	A	10260544	G	A	10260544	3	1	406	1	0	0	0	0	1	0	0	0	4710	1116	39	1	2600	1	DNMT1	19	10260544	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	3107798	10260544	48868439	127	40744										
BLVRB	0	genome.wustl.edu	37	chr19	40957355	40957355	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gatgtggtcatcagtcacagCctgcagtcgtgggggcacct	14	11	3	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	40957355	40957355	C	A	SNP	BLVRB	ENST00000263368	human	ensembl	69_37n	-1	known	missense	c.379	p.A127S	0.995	pfam_NmrA	pfam_NmrA,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	BLVRB	HGNC	ENSG00000090013	30	0	0	66	9	12	-	-	-	A	40957355	C	A	40957355	3	1	406	1	0	0	0	0	1	0	0	0	1457	739	26	4	249	4	BLVRB	19	40957355	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	30696811	40957355	18171628	128	40745										
C5AR1	0	genome.wustl.edu	37	chr19	47823226	47823226	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gtggtctgggtgacggcattCgaggccaagcggaccatcaa	15	10	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	47823226	47823226	C	G	SNP	C5AR1	ENST00000355085	human	ensembl	69_37n	1	known	missense	c.192	p.F64L	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C5A_anaphtx_rcpt,prints_Frt_met_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C5A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt,prints_Frt_met_rcpt	-	no_errors	C5AR1	HGNC	ENSG00000197405	69	0	0	21	20	48.78	-	-	-	G	47823226	C	G	47823226	3	3	406	1	0	0	0	0	1	0	0	0	2302	883	31	3	197	3	C5AR1	19	47823226	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	6865871	47823226	11305757	129	40746										
KCNA7	0	genome.wustl.edu	37	chr19	49573516	49573516	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	agctgaaattggagacaatgAcgggcactggcagggaaata	14	6	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	19	49573516	49573516	A	C	SNP	KCNA7	ENST00000221444	human	ensembl	69_37n	-1	known	missense	c.1175	p.V392G	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	24	0	0	14	11	44	-	-	-	C	49573516	A	C	49573516	3	2	406	1	0	0	0	0	1	0	0	0	8062	275	10	5	199	5	KCNA7	19	49573516	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	1750290	49573516	9555467	130	40747										
SIRPA	0	genome.wustl.edu	37	chr20	1918063	1918063	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caaccacacggagtatgccaGcattcagaccagcccgcagc	9	16	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	20	1918063	1918063	G	C	SNP	SIRPA	ENST00000400068	human	ensembl	69_37n	1	known	missense	c.1376	p.S459T	1.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPA	HGNC	ENSG00000198053	34	0	0	16	8	33.33	-	-	-	C	1918063	G	C	1918063	3	2	406	1	0	0	0	0	1	0	0	0	14421	971	34	4	1394	4	SIRPA	20	1918063	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09		1918063	61107457	131	40748										
CST1	0	genome.wustl.edu	37	chr20	23731390	23731390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgtacccactcatcattgagGtctgcgttatagatgccacc	8	12	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	20	23731390	23731390	G	T	SNP	CST1	ENST00000304749	human	ensembl	69_37n	-1	known	missense	c.114	p.D38E	0.005	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST1	HGNC	ENSG00000170373	58	0	0	40	18	31.03	-	-	-	T	23731390	G	T	23731390	3	4	406	1	0	0	0	0	1	0	0	0	4002	1252	44	4	323	4	CST1	20	23731390	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	21813327	23731390	39294130	132	40749										
C20orf43	0	genome.wustl.edu	37	chr20	55093254	55093254	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	caagtccctctttaccactcAcagctccgccaagcgctcca	5	19	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	20	55093254	55093254	A	G	SNP	C20orf43	ENST00000357348	human	ensembl	69_37n	1	known	missense	c.944	p.H315R	1.000	NULL	NULL	-	no_errors	C20orf43	HGNC	ENSG00000022277	24	0	0	11	15	57.69	-	-	-	G	55093254	A	G	55093254	3	3	406	1	0	0	0	0	1	0	0	0	2132	159	6	5	888	5	C20orf43	20	55093254	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	31361864	55093254	7932266	133	40750										
CTCFL	0	genome.wustl.edu	37	chr20	56099035	56099035	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gcagggtcaggatgtacttcTcgctctcctccgagggggcc	14	13	3	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	20	56099035	56099035	T	A	SNP	CTCFL	ENST00000423479	human	ensembl	69_37n	-1	known	missense	c.227	p.E76V	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	34	0	0	40	20	33.33	-	-	-	A	56099035	T	A	56099035	3	1	406	1	0	0	0	0	1	0	0	0	4033	1551	54	5	1804	5	CTCFL	20	56099035	Missense_Mutation	SNP	T	TCGA-AR-A251-01A-12D-A167-09	1005781	56099035	6926485	134	40751										
LSM14B	0	genome.wustl.edu	37	chr20	60699699	60699699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cctttggcactgaagaccgtCccacagataggcctgcgccc	10	16	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	20	60699699	60699699	C	T	SNP	LSM14B	ENST00000253001	human	ensembl	69_37n	1	known	missense	c.154	p.P52S	0.998	superfamily_LSM_dom	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657	35	0	0	42	9	17.65	-	-	-	T	60699699	C	T	60699699	3	4	406	1	0	0	0	0	1	0	0	0	9121	855	30	2	160	2	LSM14B	20	60699699	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	4600664	60699699	2325821	135	40752										
APP	0	genome.wustl.edu	37	chr21	27284272	27284272	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttgctctttctgaagcagctCatctaaaccaaacaaaacca	4	12	4	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	21	27284272	27284272	C	G	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.1690	p.E564Q	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	41	0	0	33	15	31.25	-	-	-	G	27284272	C	G	27284272	3	3	406	1	0	0	0	0	1	0	0	0	817	835	29	2	642	2	APP	21	27284272	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		27284272	20845623	136	40753										
PRDM15	0	genome.wustl.edu	37	chr21	43279763	43279763	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gggcccagctcgggacattcGgagtcgtggtactggctgca	16	11	0	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	21	43279763	43279763	G	A	SNP	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	silent	c.969	p.S323	0.027	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	32	0	0	24	9	27.27	-	-	-	A	43279763	G	A	43279763	2	1	406	1	0	0	0	0	0	0	0	1	12537	1103	39	1		1	PRDM15	21	43279763	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	15995491	43279763	4850132	137	40754										
KRTAP10-9	0	genome.wustl.edu	37	chr21	46047942	46047942	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	cccggcctgctacagcttctCctcaggccagaagtccagct	9	17	2	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	21	46047942	46047942	C	G	SNP	KRTAP10-9	ENST00000397911	human	ensembl	69_37n	1	known	missense	c.854	p.S285C	0.455	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	37	0	0	23	19	45.24	-	-	-	G	46047942	C	G	46047942	3	3	406	1	0	0	0	0	1	0	0	0	8569	855	30	2	856	2	KRTAP10-9	21	46047942	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09	2768179	46047942	2081953	138	40755										
DIP2A	0	genome.wustl.edu	37	chr21	47974547	47974547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	gtggctgcgtgcctgtcaccGtgcggcccccgcaccctcag	13	18	2	0			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	21	47974547	47974547	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.3217	p.V1073M	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	26	0	0	16	25	60.98	-	-	-	A	47974547	G	A	47974547	3	1	406	1	0	0	0	0	1	0	0	0	4563	1145	40	1	3402	1	DIP2A	21	47974547	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	1926605	47974547	155348	139	40756										
POTEH	0	genome.wustl.edu	37	chr22	16287713	16287713	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	accacttgcccatcttgctcCtgagtgtcttcatagcagaa	7	13	3	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	22	16287713	16287713	C	G	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	missense	c.173	p.R58T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	62	0	0	31	15	32.61	-	-	-	G	16287713	C	G	16287713	3	3	406	1	0	0	0	0	1	0	0	0	12341	681	24	4	1504	4	POTEH	22	16287713	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		16287713	35016853	140	40757										
LIMK2	0	genome.wustl.edu	37	chr22	31658194	31658194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccgcatcctggagatcaatgGgacccccgtccgcacacttc	9	17	1	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	22	31658194	31658194	G	T	SNP	LIMK2	ENST00000331728	human	ensembl	69_37n	1	known	missense	c.626	p.G209V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	40	0	0	29	13	30.23	-	-	-	T	31658194	G	T	31658194	3	4	406	1	0	0	0	0	1	0	0	0	8857	1232	43	4	705	4	LIMK2	22	31658194	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	15370481	31658194	19646372	141	40758										
SEPT3	0	genome.wustl.edu	37	chr22	42388724	42388724	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aaggagtaccaagtgaatggCaagagggtcctcggccgaaa	14	8	0	2			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	22	42388724	42388724	C	G	SNP	SEPT3	ENST00000396426	human	ensembl	69_37n	1	known	silent	c.822	p.G274	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167	66	0	0	60	17	22.08	-	-	-	G	42388724	C	G	42388724	2	3	406	1	0	0	0	0	0	0	0	1	14153	697	25	4		4	SEPT3	22	42388724	Silent	SNP	C	TCGA-AR-A251-01A-12D-A167-09	10730530	42388724	8915842	142	40759										
MAGEB6	0	genome.wustl.edu	37	chrX	26212565	26212565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	tgtaaagaagaaggcgtgcaCgttggcgcaattcctgcaga	13	8	0	3			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	X	26212565	26212565	C	T	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.602	p.T201M	0.000	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	33	0	0	12	8	40	-	-	-	T	26212565	C	T	26212565	3	4	406	1	0	0	0	0	1	0	0	0	9250	536	19	1	604	1	MAGEB6	23	26212565	Missense_Mutation	SNP	C	TCGA-AR-A251-01A-12D-A167-09		26212565	129057995	143	40760										
SMC1A	0	genome.wustl.edu	37	chrX	53423213	53423213	+	Silent	SNP	G	G	A													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ttaatgtcctgcatcttacaGgcctgtagcaagttgtgacg							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	X	53423213	53423213	G	A	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	silent	c.2796	p.A932	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	69	0	0	104	29	21.8	-	-	-	A	53423213	G	A	53423213	2	1	406	1	0	0	0	0	0	0	0	1	14870	987	35	4		4	SMC1A	23	53423213	Silent	SNP	G	TCGA-AR-A251-01A-12D-A167-09	27210648	53423213	101847347	144	40761	335	2								
SMC1A	0	genome.wustl.edu	37	chrX	53423214	53423214	+	Missense_Mutation	SNP	G	G	T													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	taatgtcctgcatcttacagGcctgtagcaagttgtgacgg							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	X	53423214	53423214	G	T	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.2795	p.A932D	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	71	0	0	106	29	21.48	-	-	-	T	53423214	G	T	53423214	3	4	406	1	0	0	0	0	1	0	0	0	14870	1203	42	4	938	4	SMC1A	23	53423214	Missense_Mutation	SNP	G	TCGA-AR-A251-01A-12D-A167-09	1	53423214	101847346	145	40762	335	2								
RGAG1	0	genome.wustl.edu	37	chrX	109694662	109694662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	aagcaatatcctcactgataAtgtcagctgtagcttctgga	8	9	3	1			TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	X	109694662	109694662	A	G	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.817	p.M273V	0.984	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	58	0	0	21	11	34.38	-	-	-	G	109694662	A	G	109694662	3	3	406	1	0	0	0	0	1	0	0	0	13357	101	4	5	819	5	RGAG1	23	109694662	Missense_Mutation	SNP	A	TCGA-AR-A251-01A-12D-A167-09	56271448	109694662	45575898	146	40763										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.124137931034483	18	0.0925534913367087	1.63078703703704	2.30228758169935	1.02997076023392	0.117971798543708	0.588655198855849	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-AR-A251-01A-12D-A167-09	TCGA-AR-A251-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68b4de6d-352d-44e8-911a-f4541f28fc78	59a8266d-0a43-4abf-bfe8-2c90002cf0bd	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	40	0	0	25	13	34.21	-	-	-	AA	135960147	-	AA	135960146	7	5	406	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-AR-A251-01A-12D-A167-09	26265484	135960146	19310414	147	40764										
DDR2	0	genome.wustl.edu	37	chr1	162731140	162731140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgacgtcaaccccagtgctcGgtttgtcacggtgcctctcc	10	15	3	1			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	1	162731140	162731140	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.995	p.R332Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	53	0	0	55	9	14.06	-	-	-	A	162731140	G	A	162731140	3	1	407	1	0	0	0	0	1	0	0	0	4368	1116	39	1	1021	1	DDR2	1	162731140	Missense_Mutation	SNP	G	TCGA-AR-A252-01A-11D-A167-09		162731140	86519481	1	40765										
GIGYF2	0	genome.wustl.edu	37	chr2	233655500	233655500	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagatgatgaacggggttacCgaagggttcgctctggcagt	16	7	1	3			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	2	233655500	233655500	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	nonsense	c.871	p.R291*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	69	0	0	72	10	12.2	-	-	-	T	233655500	C	T	233655500	4	4	407	1	0	0	0	0	0	1	0	0	6430	644	23	1	905	1	GIGYF2	2	233655500	Nonsense_Mutation	SNP	C	TCGA-AR-A252-01A-11D-A167-09		233655500	9543873	2	40766										
TMF1	0	genome.wustl.edu	37	chr3	69072340	69072340	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttcacaagttaactgagactTtgtcttaaaagttcatctat	5	7	4	1			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	3	69072340	69072340	T	C	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	silent	c.3279	p.Q1093	0.616	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	112	0	0	69	9	11.39	-	-	-	C	69072340	T	C	69072340	2	2	407	1	0	0	0	0	0	0	0	1	16323	1838	64	5		5	TMF1	3	69072340	Silent	SNP	T	TCGA-AR-A252-01A-11D-A167-09		69072340	128950090	3	40767										
SDK1	0	genome.wustl.edu	37	chr7	4272965	4272965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctcagcctggataagctccGgcaaggagtgacttacgagt	12	11	1	1			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	7	4272965	4272965	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.5906	p.R1969Q	0.825	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	17	0	0	28	7	20	-	-	-	A	4272965	G	A	4272965	3	1	407	1	0	0	0	0	1	0	0	0	14056	1116	39	1	6068	1	SDK1	7	4272965	Missense_Mutation	SNP	G	TCGA-AR-A252-01A-11D-A167-09		4272965	154865698	4	40768										
GATA3	0	genome.wustl.edu	37	chr10	8115888	8115889	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	catctcgcccttcagccactINSccagccacatgctgaccacg							TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	10	8115888	8115889	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1237_1238	p.S414fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0	45	8	15.09	-	-	-	C	8115889	-	C	8115888	7	5	407	1	0	1	1	0	0	0	0	0	6305	1551	54	0	1255	0	GATA3	10	8115888	Frame_Shift_Ins	INS	-	TCGA-AR-A252-01A-11D-A167-09		8115888	127418859	5	40769										
CX3CL1	0	genome.wustl.edu	37	chr16	57413659	57413659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aggcatcatgcggcaaacgcGcaatcatgtaggtactgccc	11	12	2	0			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	57413659	57413659	G	A	SNP	CX3CL1	ENST00000006053	human	ensembl	69_37n	1	known	missense	c.184	p.A62T	0.797	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210	33	0	0	39	5	11.36	-	-	-	A	57413659	G	A	57413659	3	1	407	1	0	0	0	0	1	0	0	0	4105	1087	38	1	190	1	CX3CL1	16	57413659	Missense_Mutation	SNP	G	TCGA-AR-A252-01A-11D-A167-09		57413659	32941094	6	40770										
CDK10	0	genome.wustl.edu	37	chr16	89758243	89758243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggtgatgggttactgtgagcAggacctggccagcctcctgg	16	10	0	2			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	89758243	89758243	A	G	SNP	CDK10	ENST00000353379	human	ensembl	69_37n	1	known	missense	c.365	p.Q122R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK10	HGNC	ENSG00000185324	52	0	0	42	6	12.5	-	-	-	G	89758243	A	G	89758243	3	3	407	1	0	0	0	0	1	0	0	0	3154	188	7	5	383	5	CDK10	16	89758243	Missense_Mutation	SNP	A	TCGA-AR-A252-01A-11D-A167-09	32344584	89758243	596510	7	40771										
MYH2	0	genome.wustl.edu	37	chr17	10428881	10428881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aacgggcctccttctgggagGcctcaagctcagcatgcgtt	12	13	3	0			TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	17	10428881	10428881	G	A	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.4424	p.A1475V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	56	0	0	55	10	15.38	-	-	-	A	10428881	G	A	10428881	3	1	407	1	0	0	0	0	1	0	0	0	10107	1203	42	4	1437	4	MYH2	17	10428881	Missense_Mutation	SNP	G	TCGA-AR-A252-01A-11D-A167-09		10428881	70766329	8	40772										
ZSCAN20	0	genome.wustl.edu	37	chr1	33956999	33956999	+	Frame_Shift_Del	DEL	A	A	-													0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	agcaatgtcgctatagggtcAaaaacctcctacggaattac							TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	1	33956999	33956999	A	-	DEL	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	frame_shift_del	c.1141	p.N382fs	1.000	smart_SANT/Myb	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	22	0	0	15	2	11.76	-	-	-	-	33956999	A	-	33956999	7	5	408	1	0	1	0	1	0	0	0	0	18324	131	5	0	1159	0	ZSCAN20	1	33956999	Frame_Shift_Del	DEL	A	TCGA-AR-A254-01A-21D-A167-09		33956999	215293622	1	40773										
TNR	0	genome.wustl.edu	37	chr1	175323569	175323569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gatgctgctccacgtggtgtCctgtgctgcctgcaggagca	14	12	0	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	1	175323569	175323569	C	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.3340	p.D1114N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	72	0	0	82	11	11.83	-	-	-	T	175323569	C	T	175323569	3	4	408	1	0	0	0	0	1	0	0	0	16433	855	30	2	760	2	TNR	1	175323569	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	141366570	175323569	73927052	2	40774										
PLCH1	0	genome.wustl.edu	37	chr3	155241748	155241748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	actgtcctcatcagaaacttCcccttcctctgcatcatccc	3	18	4	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	3	155241748	155241748	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.1372	p.E458K	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	79	0	0	59	13	18.06	-	-	-	T	155241748	C	T	155241748	3	4	408	1	0	0	0	0	1	0	0	0	12111	864	30	2	3780	2	PLCH1	3	155241748	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09		155241748	42780682	3	40775										
TRA2B	0	genome.wustl.edu	37	chr3	185643364	185643364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	atcgtctatgggagcgggagCgagaccgtgaccgggtataa	16	8	1	2			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	3	185643364	185643364	C	T	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	missense	c.221	p.R74H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	52	0	0	28	10	26.32	-	-	-	T	185643364	C	T	185643364	3	4	408	1	0	0	0	0	1	0	0	0	16530	768	27	1	673	1	TRA2B	3	185643364	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	30401616	185643364	12379066	4	40776										
DNAH5	0	genome.wustl.edu	37	chr5	13901632	13901632	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	caatgtcagccccatagttcTcaaggataagttgatatttg	8	8	2	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	13901632	13901632	T	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1781	p.E594V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	44	0	0	24	13	35.14	-	-	-	A	13901632	T	A	13901632	3	1	408	1	0	0	0	0	1	0	0	0	4640	1551	54	5	12357	5	DNAH5	5	13901632	Missense_Mutation	SNP	T	TCGA-AR-A254-01A-21D-A167-09		13901632	167013628	5	40777										
PCDHB15	0	genome.wustl.edu	37	chr5	140626710	140626710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ctctccagtcgctggactacGaggccctgcaggctttcgag	12	14	1	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	140626710	140626710	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	1	known	missense	c.1564	p.E522K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	38	0	0	21	6	22.22	-	-	-	A	140626710	G	A	140626710	3	1	408	1	0	0	0	0	1	0	0	0	11613	1059	37	1	1566	1	PCDHB15	5	140626710	Missense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09	126725078	140626710	40288550	6	40778										
SYNPO	0	genome.wustl.edu	37	chr5	150029320	150029320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	agtcacggatggagaaatatGtcatcgagtcttcaagccac	10	9	4	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	150029320	150029320	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	missense	c.2215	p.V739I	0.993	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	20	0	0	11	5	31.25	-	-	-	A	150029320	G	A	150029320	3	1	408	1	0	0	0	0	1	0	0	0	15548	1377	48	4	2221	4	SYNPO	5	150029320	Missense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09	9402610	150029320	30885940	7	40779										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549481	32549481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gcctgtggacaccatcccagCcttctcttcctggccgttca	8	17	2	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	6	32549481	32549481	C	T	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.505	p.A169T	0.016	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	39	0	0	22	3	12	-	-	-	T	32549481	C	T	32549481	3	4	408	1	0	0	0	0	1	0	0	0	7259	739	26	4	311	4	HLA-DRB1	6	32549481	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09		32549481	138565586	8	40780										
FNDC1	0	genome.wustl.edu	37	chr6	159621606	159621606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ccaggaccatttaatgaaacCgtcacaggtactacttcctc	6	13	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	6	159621606	159621606	C	T	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	1	novel	missense	c.328	p.R110C	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	58	0	0	34	9	20.93	-	-	-	T	159621606	C	T	159621606	3	4	408	1	0	0	0	0	1	0	0	0	6014	639	23	1	467	1	FNDC1	6	159621606	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	127072125	159621606	11493461	9	40781										
DLX6	0	genome.wustl.edu	37	chr7	96635680	96635680	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	acagcccttacctccagtccTaccacaacagcagcgcagcc	6	19	0	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	96635680	96635680	T	A	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	missense	c.391	p.Y131N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	25	0	0	12	5	29.41	-	-	-	A	96635680	T	A	96635680	3	1	408	1	0	0	0	0	1	0	0	0	4611	1522	53	5	393	5	DLX6	7	96635680	Missense_Mutation	SNP	T	TCGA-AR-A254-01A-21D-A167-09		96635680	62502983	10	40782										
CTTNBP2	0	genome.wustl.edu	37	chr7	117431492	117431492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	tgtggcaaactggaaggagtCgaagccacagttttgttatc	12	7	0	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	117431492	117431492	C	T	SNP	CTTNBP2	ENST00000446636	human	ensembl	69_37n	-1	novel	missense	c.343	p.D115N	0.893	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CTTNBP2	HGNC	ENSG00000077063	72	0	0	41	10	19.61	-	-	-	T	117431492	C	T	117431492	3	4	408	1	0	0	0	0	1	0	0	0	4077	871	31	1	3313	1	CTTNBP2	7	117431492	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	20795812	117431492	41707171	11	40783										
CNTNAP2	0	genome.wustl.edu	37	chr7	147600694	147600694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	tggtgggttggcaaagccaaCgagaagcactactactgggg	15	8	0	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	147600694	147600694	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	silent	c.2136	p.N712	0.792	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	25	0	0	20	7	25.93	-	-	-	T	147600694	C	T	147600694	2	4	408	1	0	0	0	0	0	0	0	1	3677	535	19	1		1	CNTNAP2	7	147600694	Silent	SNP	C	TCGA-AR-A254-01A-21D-A167-09	30169202	147600694	11537969	12	40784										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	13	0	0	16	3	15.79	-	-	-	-	150884268	AG	-	150884267	7	5	408	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-AR-A254-01A-21D-A167-09	3283573	150884267	8254396	13	40785										
KIAA1429	0	genome.wustl.edu	37	chr8	95500985	95500985	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ctaccactgcctccactaacAaactttcctcttgagcctcc	3	18	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	8	95500985	95500985	A	C	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.5388	p.F1796L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	107	0	0	120	26	17.81	-	-	-	C	95500985	A	C	95500985	3	2	408	1	0	0	0	0	1	0	0	0	8283	127	5	5	54	5	KIAA1429	8	95500985	Missense_Mutation	SNP	A	TCGA-AR-A254-01A-21D-A167-09		95500985	50863037	14	40786										
TRIM32	0	genome.wustl.edu	37	chr9	119460572	119460572	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	tcaggcaaggtataaagcagTtctccaggagtatgggcatg	13	7	2	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	119460572	119460572	T	A	SNP	TRIM32	ENST00000373983	human	ensembl	69_37n	1	known	missense	c.551	p.V184D	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401	36	0	0	17	5	22.73	-	-	-	A	119460572	T	A	119460572	3	1	408	1	0	0	0	0	1	0	0	0	16602	1725	60	5	553	5	TRIM32	9	119460572	Missense_Mutation	SNP	T	TCGA-AR-A254-01A-21D-A167-09		119460572	21752859	15	40787										
SPTAN1	0	genome.wustl.edu	37	chr9	131374449	131374449	+	Missense_Mutation	SNP	G	G	A													0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gcaaaagtcagcggaaaagaGccagaaactgaaagaagcca							TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	131374449	131374449	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.4967	p.S1656N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	53	0	0	22	19	46.34	-	-	-	A	131374449	G	A	131374449	3	1	408	1	0	0	0	0	1	0	0	0	15208	971	34	4	5117	4	SPTAN1	9	131374449	Missense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09	11913877	131374449	9838982	16	40788	336	2								
SPTAN1	0	genome.wustl.edu	37	chr9	131374450	131374450	+	Missense_Mutation	SNP	C	C	G													0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	caaaagtcagcggaaaagagCcagaaactgaaagaagccaa							TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	131374450	131374450	C	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.4968	p.S1656R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	50	0	0	23	19	45.24	-	-	-	G	131374450	C	G	131374450	3	3	408	1	0	0	0	0	1	0	0	0	15208	738	26	4	5118	4	SPTAN1	9	131374450	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	1	131374450	9838981	17	40789	336	2								
NOTCH1	0	genome.wustl.edu	37	chr9	139390870	139390870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gcccagtggctgcacgtctgCctggctcggctctccactca	11	17	3	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	139390870	139390870	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.7321	p.A2441T	1.000	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	47	0	0	26	5	16.13	-	-	-	T	139390870	C	T	139390870	3	4	408	1	0	0	0	0	1	0	0	0	10619	739	26	4	350	4	NOTCH1	9	139390870	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	8016420	139390870	1822561	18	40790										
FAM171A1	0	genome.wustl.edu	37	chr10	15255282	15255282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	tttctgctggtgctcttggaCgggcgggtagttctgctgca	15	9	3	0			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	15255282	15255282	C	T	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.2305	p.V769I	0.819	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	16	0	0	9	8	47.06	-	-	-	T	15255282	C	T	15255282	3	4	408	1	0	0	0	0	1	0	0	0	5530	536	19	1	371	1	FAM171A1	10	15255282	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09		15255282	120279465	19	40791										
SLC29A3	0	genome.wustl.edu	37	chr10	73111334	73111334	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	cccagggttgcagtccacatCcgtgtcctggcctcactgac	10	16	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	73111334	73111334	C	A	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	1	known	silent	c.399	p.I133	0.999	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	41	0	0	46	28	37.84	-	-	-	A	73111334	C	A	73111334	2	1	408	1	0	0	0	0	0	0	0	1	14625	845	30	2		2	SLC29A3	10	73111334	Silent	SNP	C	TCGA-AR-A254-01A-21D-A167-09	57856052	73111334	62423413	20	40792										
SLC29A3	0	genome.wustl.edu	37	chr10	73115895	73115895	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	attggtggacttggctgcatCcagtgatgtgaggaacagcg	15	7	0	2			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	73115895	73115895	C	A	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	1	known	missense	c.668	p.S223Y	0.324	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	44	0	0	67	35	34.31	-	-	-	A	73115895	C	A	73115895	3	1	408	1	0	0	0	0	1	0	0	0	14625	855	30	2	686	2	SLC29A3	10	73115895	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	4561	73115895	62418852	21	40793										
TRIM34	0	genome.wustl.edu	37	chr11	5631431	5631431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ccctacaaagctgagaagtaTgttccgagccccagatctga	9	12	1	3			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	11	5631431	5631431	T	A	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	missense	c.914	p.M305K	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	44	0	0	20	5	20	-	-	-	A	5631431	T	A	5631431	3	1	408	1	0	0	0	0	1	0	0	0	16604	1464	51	5		5	TRIM34	11	5631431	Missense_Mutation	SNP	T	TCGA-AR-A254-01A-21D-A167-09		5631431	129375085	22	40794										
ANKRD52	0	genome.wustl.edu	37	chr12	56638218	56638218	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ttccctcgatacagcagaaaTtctacgagagaaatgtgata	8	8	1	3			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	12	56638218	56638218	T	A	SNP	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	missense	c.2724	p.E908D	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645	34	0	0	20	4	16.67	-	-	-	A	56638218	T	A	56638218	3	1	408	1	0	0	0	0	1	0	0	0	677	1507	52	5	522	5	ANKRD52	12	56638218	Missense_Mutation	SNP	T	TCGA-AR-A254-01A-21D-A167-09		56638218	77213677	23	40795										
TP53	0	genome.wustl.edu	37	chr17	7579315	7579315	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ccctcagggcaactgaccgtGcaagtcacagacttggctgt	11	13	2	2			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	7579315	7579315	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.372	p.C124*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	11	0	0	6	6	50	-	-	-	T	7579315	G	T	7579315	4	4	408	1	0	0	0	0	0	1	0	0	16477	1311	46	4	930	4	TP53	17	7579315	Nonsense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09		7579315	73615895	24	40796										
TADA2A	0	genome.wustl.edu	37	chr17	35822222	35822222	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	taatcaaccttagaaagtttCaatgtaagtattagcagttt	6	5	2	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	35822222	35822222	C	T	SNP	TADA2A	ENST00000225396	human	ensembl	69_37n	1	known	nonsense	c.709	p.Q237*	1.000	pirsf_Transcriptional_adaptor_2	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264	78	0	0	59	21	26.25	-	-	-	T	35822222	C	T	35822222	4	4	408	1	0	0	0	0	0	1	0	0	15602	827	29	2	743	2	TADA2A	17	35822222	Nonsense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	28242907	35822222	45372988	25	40797										
CDC6	0	genome.wustl.edu	37	chr17	38450220	38450220	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	agtgtgttggtattggacgaGatggatcaactggacagcaa	14	5	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	38450220	38450220	G	A	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	silent	c.855	p.E285	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	84	0	0	618	97	13.57	-	-	-	A	38450220	G	A	38450220	2	1	408	1	0	0	0	0	0	0	0	1	3112	933	33	2		2	CDC6	17	38450220	Silent	SNP	G	TCGA-AR-A254-01A-21D-A167-09	2627998	38450220	42744990	26	40798										
RASAL3	0	genome.wustl.edu	37	chr19	15565071	15565071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	gcagtggttccagggtgtctCgggttgtctggtgaggcatg	18	7	2	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	15565071	15565071	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.2168	p.R723Q	0.034	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	34	0	0	23	4	14.81	-	-	-	T	15565071	C	T	15565071	3	4	408	1	0	0	0	0	1	0	0	0	13148	884	31	1	887	1	RASAL3	19	15565071	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09		15565071	43563912	27	40799										
RTN2	0	genome.wustl.edu	37	chr19	45997940	45997940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	cctcaggtcttccagagggcGctcggatggaggcgcggtgt	17	11	2	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	45997940	45997940	G	A	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	missense	c.403	p.R135C	0.003	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	30	0	0	23	6	20.69	-	-	-	A	45997940	G	A	45997940	3	1	408	1	0	0	0	0	1	0	0	0	13812	1087	38	1	1270	1	RTN2	19	45997940	Missense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09	30432869	45997940	13131043	28	40800										
CARD8	0	genome.wustl.edu	37	chr19	48737790	48737790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	ctcagaaacacagggtagctCcctgtataccctggaaaaca	8	12	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	48737790	48737790	C	T	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.220	p.E74K	0.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	33	0	0	28	4	12.5	-	-	-	T	48737790	C	T	48737790	3	4	408	1	0	0	0	0	1	0	0	0	2676	864	30	2	1429	2	CARD8	19	48737790	Missense_Mutation	SNP	C	TCGA-AR-A254-01A-21D-A167-09	2739850	48737790	10391193	29	40801										
MYH14	0	genome.wustl.edu	37	chr19	50764750	50764750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	agatccaggcgctggaactgGaccccaacctctaccgcgtg	11	15	1	1			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	50764750	50764750	G	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.2443	p.D815Y	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	11	0	0	5	5	50	-	-	-	T	50764750	G	T	50764750	3	4	408	1	0	0	0	0	1	0	0	0	10105	1174	41	2	2521	2	MYH14	19	50764750	Missense_Mutation	SNP	G	TCGA-AR-A254-01A-21D-A167-09	2026960	50764750	8364233	30	40802										
SYT3	0	genome.wustl.edu	37	chr19	51129221	51129221	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	atggtcacggtgaggcgcccGgccgtggggaggtagcagag	20	9	1	2			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	51129221	51129221	G	A	SNP	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	silent	c.1335	p.A445	0.916	superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	46	0	0	30	4	11.76	-	-	-	A	51129221	G	A	51129221	2	1	408	1	0	0	0	0	0	0	0	1	15567	1103	39	1		1	SYT3	19	51129221	Silent	SNP	G	TCGA-AR-A254-01A-21D-A167-09	364471	51129221	7999762	31	40803										
RUNX1	0	genome.wustl.edu	37	chr21	36206874	36206874	+	Frame_Shift_Del	DEL	T	T	-													0.0645161290322581	2	0.878260790710963	1.07486631016043	NA	1.07486631016043	0.333333333333333	0.930327025915261	0	acaagctcccgggcttggtcTgatcatctagtttctgccga							TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	21	36206874	36206874	T	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.638	p.Q213fs	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	38	0	0	22	11	33.33	-	-	-	-	36206874	T	-	36206874	7	5	408	1	0	1	0	1	0	0	0	0	13832	1580	55	0	849	0	RUNX1	21	36206874	Frame_Shift_Del	DEL	T	TCGA-AR-A254-01A-21D-A167-09		36206874	11923021	32	40804										
DPH2	0	genome.wustl.edu	37	chr1	44436697	44436697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tcaggctctcatacattttgGccctgcctgcttaagccctc	7	15	2	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	44436697	44436697	G	A	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	1	known	missense	c.320	p.G107D	1.000	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	50	0	0	17	11	37.93	-	-	-	A	44436697	G	A	44436697	3	1	409	1	0	0	0	0	1	0	0	0	4755	1203	42	4	330	4	DPH2	1	44436697	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		44436697	204813924	1	40805										
TRIM33	0	genome.wustl.edu	37	chr1	114944055	114944055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ttcaatacttaattcatggcAatagaggtaaagcagaagac	8	6	2	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	114944055	114944055	A	G	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	missense	c.2923	p.C975R	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	41	0	0	31	10	24.39	-	-	-	G	114944055	A	G	114944055	3	3	409	1	0	0	0	0	1	0	0	0	16603	130	5	5	476	5	TRIM33	1	114944055	Missense_Mutation	SNP	A	TCGA-AR-A255-01A-11D-A167-09	70507358	114944055	134306566	2	40806										
FAM20B	0	genome.wustl.edu	37	chr1	179019422	179019422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ttcactttgcaggtatagccGagaccatgtggtggaagggg	15	7	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	179019422	179019422	G	A	SNP	FAM20B	ENST00000263733	human	ensembl	69_37n	1	known	missense	c.386	p.R129Q	1.000	NULL	pfam_DUF1193	-	no_errors	FAM20B	HGNC	ENSG00000116199	122	0	0	59	7	10.61	-	-	-	A	179019422	G	A	179019422	3	1	409	1	0	0	0	0	1	0	0	0	5580	1058	37	1	392	1	FAM20B	1	179019422	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	64075367	179019422	70231199	3	40807										
CACNA1E	0	genome.wustl.edu	37	chr1	181767626	181767626	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ccccgctgacctcccaagctCtggagagcaacaatgcttgc	9	16	1	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	181767626	181767626	C	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.6598	p.L2200M	0.964	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	40	0	0	24	7	22.58	-	-	-	A	181767626	C	A	181767626	3	1	409	1	0	0	0	0	1	0	0	0	2567	912	32	2	6655	2	CACNA1E	1	181767626	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	2748204	181767626	67482995	4	40808										
GREM2	0	genome.wustl.edu	37	chr1	240656696	240656696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	aaggcgaggggatggcgcccGccggccggttcttccgggct	18	13	1	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	240656696	240656696	G	A	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	missense	c.80	p.A27V	0.971	pirsf_Gremlin_precursor	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	26	0	0	14	4	22.22	-	-	-	A	240656696	G	A	240656696	3	1	409	1	0	0	0	0	1	0	0	0	6813	1087	38	1	430	1	GREM2	1	240656696	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	58889070	240656696	8593925	5	40809										
CNNM4	0	genome.wustl.edu	37	chr2	97427918	97427918	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	agcgatgccatcctggacttCaacaccatgtcggagataat	9	11	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	97427918	97427918	C	A	SNP	CNNM4	ENST00000377075	human	ensembl	69_37n	1	known	missense	c.1182	p.F394L	1.000	NULL	pfam_DUF21,pfam_Cysta_beta_synth_core,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158	68	0	0	40	6	13.04	-	-	-	A	97427918	C	A	97427918	3	1	409	1	0	0	0	0	1	0	0	0	3645	825	29	2	1184	2	CNNM4	2	97427918	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09		97427918	145771455	6	40810										
RANBP2	0	genome.wustl.edu	37	chr2	109380485	109380487	+	In_Frame_Del	DEL	GAT	GAT	-													0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atggaggaagtgcccatgggGatgatgatgatgacggtcct							TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	109380485	109380487	GAT	-	DEL	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	in_frame_del	c.3490_3492	p.D1167in_frame_del	1.000:1.000:0.985	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	28	0	0	18	2	10	-	-	-	-	109380487	GAT	-	109380485	7	5	409	1	0	1	0	1	0	0	0	0	13111	1174	41	0	3568	0	RANBP2	2	109380485	In_Frame_Del	DEL	GAT	TCGA-AR-A255-01A-11D-A167-09	11952567	109380485	133818888	7	40811										
POLR1B	0	genome.wustl.edu	37	chr2	113325615	113325615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atgacaggaaaaccaagtctGtacccaggattgttcctttt	8	9	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	113325615	113325615	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	silent	c.1932	p.L644	1.000	pfam_RNA_pol_Rpa2-specific	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	85	0	0	63	16	20.25	-	-	-	A	113325615	G	A	113325615	2	1	409	1	0	0	0	0	0	0	0	1	12284	1364	48	4		4	POLR1B	2	113325615	Silent	SNP	G	TCGA-AR-A255-01A-11D-A167-09	3945130	113325615	129873758	8	40812										
KIF5C	0	genome.wustl.edu	37	chr2	149798136	149798136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ttaactaggtttcctattttGagatctacttggacaaaata	6	6	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	149798136	149798136	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	112	0	0	70	15	17.65	-	-	-	A	149798136	G	A	149798136	3	1	409	1	0	0	0	0	1	0	0	0	8359	1291	45	2	349	2	KIF5C	2	149798136	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	36472521	149798136	93401237	9	40813										
SCN2A	0	genome.wustl.edu	37	chr2	166201270	166201270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tgattgtgaactcccacgctGgcacatgcatgactttttcc	8	12	0	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	166201270	166201270	G	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.2768	p.W923L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	143	0	0	52	15	22.39	-	-	-	T	166201270	G	T	166201270	3	4	409	1	0	0	0	0	1	0	0	0	14004	1357	47	4	2922	4	SCN2A	2	166201270	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	16403134	166201270	76998103	10	40814										
ZC3H15	0	genome.wustl.edu	37	chr2	187370543	187370543	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ggaagcagatgatacccgctAcacccagggaacaggtggtg	14	10	0	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	187370543	187370543	A	G	SNP	ZC3H15	ENST00000337859	human	ensembl	69_37n	1	known	missense	c.941	p.Y314C	0.988	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	122	0	0	44	9	16.98	-	-	-	G	187370543	A	G	187370543	3	3	409	1	0	0	0	0	1	0	0	0	17663	391	14	5	971	5	ZC3H15	2	187370543	Missense_Mutation	SNP	A	TCGA-AR-A255-01A-11D-A167-09	21169273	187370543	55828830	11	40815										
ADAM23	0	genome.wustl.edu	37	chr2	207435499	207435499	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gaatgtggaaatggatacgtGgaagctggggaggagtgtga	19	2	0	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	207435499	207435499	G	T	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	silent	c.1530	p.V510	0.999	pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	127	0	0	47	10	17.54	-	-	-	T	207435499	G	T	207435499	2	4	409	1	0	0	0	0	0	0	0	1	245	1335	47	4		4	ADAM23	2	207435499	Silent	SNP	G	TCGA-AR-A255-01A-11D-A167-09	20064956	207435499	35763874	12	40816										
TWF2	0	genome.wustl.edu	37	chr3	52265497	52265497	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gctcatccttgatgtggccaCctccaaactcctttttcact	5	15	2	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	52265497	52265497	C	A	SNP	TWF2	ENST00000305533	human	ensembl	69_37n	-1	known	missense	c.341	p.G114V	0.996	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF2	HGNC	ENSG00000247596	33	0	0	28	7	20	-	-	-	A	52265497	C	A	52265497	3	1	409	1	0	0	0	0	1	0	0	0	16879	507	18	4	732	4	TWF2	3	52265497	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09		52265497	145756933	13	40817										
HTR1F	0	genome.wustl.edu	37	chr3	88039993	88039993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tggtgtccctcactctgtctGggctggcactgatgacaaca	11	12	3	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	88039993	88039993	G	A	SNP	HTR1F	ENST00000319595	human	ensembl	69_37n	1	known	missense	c.94	p.G32R	0.001	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1F	HGNC	ENSG00000179097	70	0	0	39	10	20.41	-	-	-	A	88039993	G	A	88039993	3	1	409	1	0	0	0	0	1	0	0	0	7494	1348	47	4	96	4	HTR1F	3	88039993	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	35774496	88039993	109982437	14	40818										
CPNE4	0	genome.wustl.edu	37	chr3	131293958	131293958	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ccatgatgtagtccaagaaaGaatgcatcttgtgaatctgc	9	8	2	4			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	131293958	131293958	G	T	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	missense	c.938	p.S313Y	1.000	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	80	0	0	89	11	11	-	-	-	T	131293958	G	T	131293958	3	4	409	1	0	0	0	0	1	0	0	0	3844	942	33	2	817	2	CPNE4	3	131293958	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	43253965	131293958	66728472	15	40819										
PPP2R3A	0	genome.wustl.edu	37	chr3	135721399	135721399	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	cgatttcaaactattgaattGcaaaatgacaagcctaattc	5	8	1	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	135721399	135721399	G	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	silent	c.1059	p.L353	0.008	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	72	0	0	48	27	36	-	-	-	A	135721399	G	A	135721399	2	1	409	1	0	0	0	0	0	0	0	1	12465	1310	46	4		4	PPP2R3A	3	135721399	Silent	SNP	G	TCGA-AR-A255-01A-11D-A167-09	4427441	135721399	62301031	16	40820										
XRN1	0	genome.wustl.edu	37	chr3	142090130	142090130	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atcttcatagaacacatcctCttggctatttttggctatat	5	9	3	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	142090130	142090130	C	A	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	nonsense	c.3019	p.E1007*	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	115	0	0	109	13	10.66	-	-	-	A	142090130	C	A	142090130	4	1	409	1	0	0	0	0	0	1	0	0	17556	922	32	2	2169	2	XRN1	3	142090130	Nonsense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	6368731	142090130	55932300	17	40821										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	28	18	39.13	-	-	-	A	178921553	T	A	178921553	3	1	409	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-AR-A255-01A-11D-A167-09	36831423	178921553	19100877	18	40822										
SLC4A4	0	genome.wustl.edu	37	chr4	72205101	72205101	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ctgcagtctctcctgctgcaGaacgcatccgattcatcttg	8	14	3	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	72205101	72205101	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.268	p.E90K	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	58	0	0	27	9	25	-	-	-	A	72205101	G	A	72205101	3	1	409	1	0	0	0	0	1	0	0	0	14745	943	33	2	399	2	SLC4A4	4	72205101	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		72205101	118949175	19	40823										
TET2	0	genome.wustl.edu	37	chr4	106190872	106190872	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tctgtgctcatgcccacagaGacttgcacaacatgcagaat	8	12	2	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	106190872	106190872	G	C	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.4150	p.D1384H	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	42	0	0	21	6	22.22	-	-	-	C	106190872	G	C	106190872	3	2	409	1	0	0	0	0	1	0	0	0	15865	942	33	2	4265	2	TET2	4	106190872	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	33985771	106190872	84963404	20	40824										
PRDM5	0	genome.wustl.edu	37	chr4	121698355	121698355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ctccatacctgtgtggctccGgatatgaactctgagtgtac	10	11	1	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	121698355	121698355	G	A	SNP	PRDM5	ENST00000264808	human	ensembl	69_37n	-1	known	missense	c.1525	p.R509W	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738	101	0	0	68	11	13.92	-	-	-	A	121698355	G	A	121698355	3	1	409	1	0	0	0	0	1	0	0	0	12541	1115	39	1	383	1	PRDM5	4	121698355	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	15507483	121698355	69455921	21	40825										
SPATA4	0	genome.wustl.edu	37	chr4	177116659	177116659	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	cgaaagtgacggtgacttgtCtagggctgccgcagtctgtg	15	9	2	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	177116659	177116659	C	G	SNP	SPATA4	ENST00000280191	human	ensembl	69_37n	-1	known	missense	c.55	p.D19H	0.000	NULL	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628	64	0	0	21	4	16	-	-	-	G	177116659	C	G	177116659	3	3	409	1	0	0	0	0	1	0	0	0	15101	913	32	2	886	2	SPATA4	4	177116659	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	55418304	177116659	14037617	22	40826										
IL17B	0	genome.wustl.edu	37	chr5	148756493	148756493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ggcacctggtgagggccaggGgccaggggcccaggccgccc	19	15	0	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	148756493	148756493	G	A	SNP	IL17B	ENST00000261796	human	ensembl	69_37n	-1	known	silent	c.117	p.A39	0.734	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17B	HGNC	ENSG00000127743	25	0	0	21	10	32.26	-	-	-	A	148756493	G	A	148756493	2	1	409	1	0	0	0	0	0	0	0	1	7689	1219	43	4		4	IL17B	5	148756493	Silent	SNP	G	TCGA-AR-A255-01A-11D-A167-09		148756493	32158767	23	40827										
TYW1B	0	genome.wustl.edu	37	chr7	72286035	72286035	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gcagatccagggacgtaactGcttcagcaagaactgttgca	11	10	1	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	72286035	72286035	G	A	SNP	TYW1B	ENST00000437915	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.831	-	-	-	no_errors	TYW1B	HGNC	ENSG00000254184	118	0	0	57	11	16.18	-	-	-	A	72286035	G	A	72286035	1	1	409	0	1	0	0	0	0	0	0	0	16916	1319	46	4		4	TYW1B	7	72286035	RNA	SNP	G	TCGA-AR-A255-01A-11D-A167-09		72286035	86852628	24	40828										
PCLO	0	genome.wustl.edu	37	chr7	82544944	82544944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atgtttcagaagctttaactCgtaaggatcctccattgggt	9	8	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	82544944	82544944	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.12358	p.E4120K	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	74	0	0	43	7	14	-	-	-	T	82544944	C	T	82544944	3	4	409	1	0	0	0	0	1	0	0	0	11656	893	31	1	3163	1	PCLO	7	82544944	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	10258909	82544944	76593719	25	40829										
CSMD3	0	genome.wustl.edu	37	chr8	113988070	113988070	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	aaataacatccaatacctctAtgagtaacaactgcaagctc	4	11	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	113988070	113988070	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.1338	p.H446	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	115	0	0	69	57	45.24	-	-	-	G	113988070	A	G	113988070	2	3	409	1	0	0	0	0	0	0	0	1	3978	446	16	5		5	CSMD3	8	113988070	Silent	SNP	A	TCGA-AR-A255-01A-11D-A167-09		113988070	32375952	26	40830										
MFSD3	0	genome.wustl.edu	37	chr8	145736012	145736012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ctctgttgaggtcggtgctgCgcttccgcctcgggggccta	15	13	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	145736012	145736012	C	T	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	1	known	missense	c.862	p.R288C	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	37	0	0	11	15	55.56	-	-	-	T	145736012	C	T	145736012	3	4	409	1	0	0	0	0	1	0	0	0	9603	768	27	1	872	1	MFSD3	8	145736012	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	31747942	145736012	628010	27	40831										
CNTLN	0	genome.wustl.edu	37	chr9	17416099	17416099	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gaaaacagcagaattgtctgTtaaagaatataaagaagtta	8	3	1	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	17416099	17416099	T	G	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.3026	p.V1009G	0.877	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	46	0	0	31	7	18.42	-	-	-	G	17416099	T	G	17416099	3	3	409	1	0	0	0	0	1	0	0	0	3669	1725	60	5	3126	5	CNTLN	9	17416099	Missense_Mutation	SNP	T	TCGA-AR-A255-01A-11D-A167-09		17416099	123797332	28	40832										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18888027	18888027	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ggtgctcatgcagaaggcatCtttagtgatccaaggtaaga	12	7	2	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	18888027	18888027	C	A	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	1	known	missense	c.551	p.S184Y	0.025	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	44	0	0	20	6	23.08	-	-	-	A	18888027	C	A	18888027	3	1	409	1	0	0	0	0	1	0	0	0	274	913	32	2	4546	2	ADAMTSL1	9	18888027	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	1471928	18888027	122325404	29	40833										
PLCE1	0	genome.wustl.edu	37	chr10	95993811	95993811	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atgtcatttacttgcaatagGtcaagaaaagttttaaaaat	6	4	2	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	95993811	95993811	G	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.1956	p.R652S	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	54	0	0	20	10	33.33	-	-	-	C	95993811	G	C	95993811	3	2	409	1	0	0	0	0	1	0	0	0	12108	1275	44	4	2260	4	PLCE1	10	95993811	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		95993811	39540936	30	40834										
AMBRA1	0	genome.wustl.edu	37	chr11	46564000	46564000	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ctgttgggtctggggagcttCcccactcaggctctgatcca	12	13	3	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	46564000	46564000	C	A	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	nonsense	c.1567	p.E523*	0.617	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	42	0	0	35	5	12.5	-	-	-	A	46564000	C	A	46564000	4	1	409	1	0	0	0	0	0	1	0	0	565	864	30	2	2377	2	AMBRA1	11	46564000	Nonsense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09		46564000	88442516	31	40835										
PGR	0	genome.wustl.edu	37	chr11	100933223	100933223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tactgaaagaagttgcctctCgcctagttgattaagacttg	9	8	1	4			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	100933223	100933223	C	T	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.2167	p.E723K	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	93	0	0	40	10	20	-	-	-	T	100933223	C	T	100933223	3	4	409	1	0	0	0	0	1	0	0	0	11879	893	31	1	654	1	PGR	11	100933223	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	54369223	100933223	34073293	32	40836										
ATM	0	genome.wustl.edu	37	chr11	108196269	108196269	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	ccagaactttcaagaacactCaggtaaatacaatttaaaac	4	9	2	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	108196269	108196269	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	nonsense	c.6805	p.Q2269*	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	44	0	0	31	20	39.22	-	-	-	T	108196269	C	T	108196269	4	4	409	1	0	0	0	0	0	1	0	0	1113	827	29	2	6983	2	ATM	11	108196269	Nonsense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	7263046	108196269	26810247	33	40837										
SLC38A4	0	genome.wustl.edu	37	chr12	47163175	47163175	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tcgtatccagctgaagggtcGtttgggaaataacagtgtga	13	6	0	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	47163175	47163175	G	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	nonsense	c.1336	p.R446*	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	48	0	0	34	7	17.07	-	-	-	A	47163175	G	A	47163175	4	1	409	1	0	0	0	0	0	1	0	0	14695	1153	40	1	319	1	SLC38A4	12	47163175	Nonsense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		47163175	86688720	34	40838										
MLL2	0	genome.wustl.edu	37	chr12	49427620	49427622	+	In_Frame_Del	DEL	TGG	TGG	-													0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tggtgagcagccggggactcTgggaagggctgagagccagc							TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	49427620	49427622	TGG	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	in_frame_del	c.10868_10866	p.Q3623in_frame_del	1.000:1.000:0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	23	0	0	9	3	25	-	-	-	-	49427622	TGG	-	49427620	7	5	409	1	0	1	0	1	0	0	0	0	9692	1580	55	0	5809	0	MLL2	12	49427620	In_Frame_Del	DEL	TGG	TCGA-AR-A255-01A-11D-A167-09	2264445	49427620	84424275	35	40839										
WDR66	0	genome.wustl.edu	37	chr12	122413496	122413496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	agctccgcagtcaaggcatcGacacaatggagaccagaaag	11	11	1	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	122413496	122413496	G	C	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.2911	p.D971H	0.835	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	87	0	0	49	12	19.67	-	-	-	C	122413496	G	C	122413496	3	2	409	1	0	0	0	0	1	0	0	0	17414	1058	37	3	3040	3	WDR66	12	122413496	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	72985876	122413496	11438399	36	40840										
OR4Q3	0	genome.wustl.edu	37	chr14	20216051	20216051	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tgctggtgtgggggttttatCcactctatcatgcaggtcat	12	8	3	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	20216051	20216051	C	A	SNP	OR4Q3	ENST00000331723	human	ensembl	69_37n	1	known	silent	c.465	p.I155	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	140	0	0	32	36	52.94	-	-	-	A	20216051	C	A	20216051	2	1	409	1	0	0	0	0	0	0	0	1	11154	845	30	2		2	OR4Q3	14	20216051	Silent	SNP	C	TCGA-AR-A255-01A-11D-A167-09		20216051	87133489	37	40841										
GTF2A1	0	genome.wustl.edu	37	chr14	81658982	81658982	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	atccccagttccatcaacttGtaagaccaatggagcttgtg	8	11	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	81658982	81658982	G	T	SNP	GTF2A1	ENST00000553612	human	ensembl	69_37n	-1	known	missense	c.814	p.Q272K	1.000	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx	-	no_errors	GTF2A1	HGNC	ENSG00000165417	89	0	0	27	10	27.03	-	-	-	T	81658982	G	T	81658982	3	4	409	1	0	0	0	0	1	0	0	0	6903	1386	48	4	328	4	GTF2A1	14	81658982	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	61442931	81658982	25690558	38	40842										
CCDC88C	0	genome.wustl.edu	37	chr14	91779543	91779543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gcagcgggccagctccttgtCcagcgcgcggctctccttct	12	17	2	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	91779543	91779543	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.2617	p.D873N	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	75	0	0	34	7	16.67	-	-	-	T	91779543	C	T	91779543	3	4	409	1	0	0	0	0	1	0	0	0	2892	855	30	2	3533	2	CCDC88C	14	91779543	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	10120561	91779543	15569997	39	40843										
NDUFAF1	0	genome.wustl.edu	37	chr15	41687079	41687079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	tgacctcctgccagtagggtCccccgcgggtgaacatgaag	13	13	0	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	15	41687079	41687079	C	T	SNP	NDUFAF1	ENST00000260361	human	ensembl	69_37n	-1	known	missense	c.737	p.G246E	1.000	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	39	0	0	24	7	22.58	-	-	-	T	41687079	C	T	41687079	3	4	409	1	0	0	0	0	1	0	0	0	10346	855	30	2	258	2	NDUFAF1	15	41687079	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09		41687079	60844313	40	40844										
TIGD7	0	genome.wustl.edu	37	chr16	3349850	3349850	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	aacaattctctggtgaaccaAacatctttactgggtttata	6	8	2	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	3349850	3349850	A	T	SNP	TIGD7	ENST00000268674	human	ensembl	69_37n	-1	known	silent	c.765	p.V255	0.565	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993	48	0	0	61	8	11.59	-	-	-	T	3349850	A	T	3349850	2	4	409	1	0	0	0	0	0	0	0	1	15996	1	1	5		5	TIGD7	16	3349850	Silent	SNP	A	TCGA-AR-A255-01A-11D-A167-09		3349850	87004903	41	40845										
PKD1L2	0	genome.wustl.edu	37	chr16	81193423	81193423	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gatccacgtgggcagctcatCtgtaggaaagggggttccag	15	9	2	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	81193423	81193423	C	A	SNP	PKD1L2	ENST00000299598	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.978	-	-	-	no_coding_region	PKD1L2	HGNC	ENSG00000166473	36	0	0	16	4	20	-	-	-	A	81193423	C	A	81193423	5	1	409	1	0	0	0	0	0	0	1	0	12039	927	32	2	3762	2	PKD1L2	16	81193423	Splice_Site	SNP	C	TCGA-AR-A255-01A-11D-A167-09	77843573	81193423	9161330	42	40846										
MNT	0	genome.wustl.edu	37	chr17	2297393	2297393	+	Frame_Shift_Del	DEL	C	C	-													0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	attggacgtcttcttgtcatCcacgttggggatgttccgct							TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	17	2297393	2297393	C	-	DEL	MNT	ENST00000174618	human	ensembl	69_37n	-1	known	frame_shift_del	c.751	p.D251fs	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MNT	HGNC	ENSG00000070444	21	0	0	6	2	25	-	-	-	-	2297393	C	-	2297393	7	5	409	1	0	1	0	1	0	0	0	0	9750	855	30	0	1009	0	MNT	17	2297393	Frame_Shift_Del	DEL	C	TCGA-AR-A255-01A-11D-A167-09		2297393	78897817	43	40847										
ABCC3	0	genome.wustl.edu	37	chr17	48750941	48750941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	cgtacccagccctgctgcagCgcaacggctcctttgccaac	9	18	0	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	17	48750941	48750941	C	A	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.2521	p.R841S	0.882	pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	52	0	0	31	8	20.51	-	-	-	A	48750941	C	A	48750941	3	1	409	1	0	0	0	0	1	0	0	0	54	768	27	3	2679	3	ABCC3	17	48750941	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09	46453548	48750941	32444269	44	40848										
CEP192	0	genome.wustl.edu	37	chr18	13056429	13056429	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	agcaccaccttgcctcagtgCcatgctggcaatgccacagt	9	15	1	0			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	18	13056429	13056429	C	G	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.3840	p.C1280W	0.598	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	77	0	0	26	12	31.58	-	-	-	G	13056429	C	G	13056429	3	3	409	1	0	0	0	0	1	0	0	0	3280	747	26	4	3910	4	CEP192	18	13056429	Missense_Mutation	SNP	C	TCGA-AR-A255-01A-11D-A167-09		13056429	65020819	45	40849										
PKN1	0	genome.wustl.edu	37	chr19	14574672	14574672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	agcgtgctaggcagatgaacAtcgatgtcgccacgtgggtg	15	9	0	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	14574672	14574672	A	G	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	1	known	missense	c.1546	p.I516V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	22	0	0	12	6	33.33	-	-	-	G	14574672	A	G	14574672	3	3	409	1	0	0	0	0	1	0	0	0	12053	217	8	5	1613	5	PKN1	19	14574672	Missense_Mutation	SNP	A	TCGA-AR-A255-01A-11D-A167-09		14574672	44554311	46	40850										
ZNF546	0	genome.wustl.edu	37	chr19	40521493	40521493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	cgacatcacatagttcacacGggtgagaaaccctataaatg	8	10	2	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	40521493	40521493	G	A	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	silent	c.2316	p.T772	0.985	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	36	0	0	26	14	35	-	-	-	A	40521493	G	A	40521493	2	1	409	1	0	0	0	0	0	0	0	1	18074	1103	39	1		1	ZNF546	19	40521493	Silent	SNP	G	TCGA-AR-A255-01A-11D-A167-09	25946821	40521493	18607490	47	40851										
RALGAPA2	0	genome.wustl.edu	37	chr20	20553660	20553660	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	gagtctgggtgccaaccagtGaggctccccccggcgattat	13	13	1	1			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	20553660	20553660	G	A	SNP	RALGAPA2	ENST00000430436	human	ensembl	69_37n	-1	known	missense	c.2210	p.S737L	0.992	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGAPA2	HGNC	ENSG00000188559	43	0	0	32	4	10.81	-	-	-	A	20553660	G	A	20553660	3	1	409	1	0	0	0	0	1	0	0	0	13097	1277	45	2	2937	2	RALGAPA2	20	20553660	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		20553660	42471860	48	40852										
TTPAL	0	genome.wustl.edu	37	chr20	43113021	43113021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	caattactgaaaacatccgaGccatatacttgaccttagaa	5	10	0	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	43113021	43113021	G	A	SNP	TTPAL	ENST00000262605	human	ensembl	69_37n	1	known	missense	c.490	p.A164T	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	64	0	0	48	9	15.79	-	-	-	A	43113021	G	A	43113021	3	1	409	1	0	0	0	0	1	0	0	0	16834	971	34	4	496	4	TTPAL	20	43113021	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	22559361	43113021	19912499	49	40853										
KIAA1210	0	genome.wustl.edu	37	chrX	118221586	118221586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	agagctctctgaaaagatttGctgtgccataaatttcacga	8	8	2	3			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	118221586	118221586	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3607	p.Q1203K	0.007	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	56	0	0	23	5	17.86	-	-	-	T	118221586	G	T	118221586	3	4	409	1	0	0	0	0	1	0	0	0	8266	1328	46	4	1538	4	KIAA1210	23	118221586	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09		118221586	37048974	50	40854										
SAGE1	0	genome.wustl.edu	37	chrX	134994548	134994548	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.268751468225842	1.79802824407141	2.77410071942446	1.57619359058208	0.378260869565217	0.991179622791967	0	aagtcaagagacaatttgttGaatttaccatcaaggaagca	8	6	2	2			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	134994548	134994548	G	A	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.2590	p.E864K	0.995	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	88	0	0	46	7	13.21	-	-	-	A	134994548	G	A	134994548	3	1	409	1	0	0	0	0	1	0	0	0	13895	1291	45	2	2660	2	SAGE1	23	134994548	Missense_Mutation	SNP	G	TCGA-AR-A255-01A-11D-A167-09	16772962	134994548	20276012	51	40855										
CHD5	0	genome.wustl.edu	37	chr1	6181593	6181593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cttggcttctgtgccccgggGtctttctcatccatgtagcc	10	14	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	6181593	6181593	G	T	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.4740	p.D1580E	0.648	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	37	0	0	7	21	72.41	-	-	-	T	6181593	G	T	6181593	3	4	410	1	0	0	0	0	1	0	0	0	3357	1252	44	4	1164	4	CHD5	1	6181593	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09		6181593	243069028	1	40856										
MACF1	0	genome.wustl.edu	37	chr1	39851426	39851426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gaggctgtaaagcagcaattGgaagagaccagtgaaattcg	13	6	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	39851426	39851426	G	A	SNP	MACF1	ENST00000372925	human	ensembl	69_37n	1	novel	missense	c.5320	p.G1774R	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MACF1	HGNC	ENSG00000127603	31	0	0	35	9	20.45	-	-	-	A	39851426	G	A	39851426	3	1	410	1	0	0	0	0	1	0	0	0	9211	1339	47	4	14340	4	MACF1	1	39851426	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	33669833	39851426	209399195	2	40857										
RPE65	0	genome.wustl.edu	37	chr1	68903958	68903958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcacctcttcccagttctcaCgtaaattggctaaatataag	5	11	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	68903958	68903958	C	T	SNP	RPE65	ENST00000262340	human	ensembl	69_37n	-1	known	missense	c.1040	p.R347H	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	57	0	0	50	22	30.56	-	-	-	T	68903958	C	T	68903958	3	4	410	1	0	0	0	0	1	0	0	0	13631	536	19	1	581	1	RPE65	1	68903958	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	29052532	68903958	180346663	3	40858										
PSMA5	0	genome.wustl.edu	37	chr1	109957929	109957929	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agtggggaagtaattctcttCtccacagctaggcacacacc	9	12	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	109957929	109957929	C	T	SNP	PSMA5	ENST00000271308	human	ensembl	69_37n	-1	known	silent	c.153	p.E51	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA5	HGNC	ENSG00000143106	50	0	0	43	22	33.85	-	-	-	T	109957929	C	T	109957929	2	4	410	1	0	0	0	0	0	0	0	1	12750	912	32	2		2	PSMA5	1	109957929	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	41053971	109957929	139292692	4	40859										
OVGP1	0	genome.wustl.edu	37	chr1	111966173	111966173	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gaccagacttacttcaattaAgaagagaaaagtccaccggt	8	9	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	111966173	111966173	A	C	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.475	p.L159V	0.963	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	30	0	0	31	13	29.55	-	-	-	C	111966173	A	C	111966173	3	2	410	1	0	0	0	0	1	0	0	0	11398	69	3	5	1589	5	OVGP1	1	111966173	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	2008244	111966173	137284448	5	40860										
NGF	0	genome.wustl.edu	37	chr1	115829056	115829056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gatgggatgggatgatgaccGcttgctcctgtgagtcctgt	15	8	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	115829056	115829056	G	A	SNP	NGF	ENST00000369512	human	ensembl	69_37n	-1	known	missense	c.361	p.R121W	1.000	pirsf_Nerve_growth_factor-like	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259	40	0	0	34	10	22.73	-	-	-	A	115829056	G	A	115829056	3	1	410	1	0	0	0	0	1	0	0	0	10467	1086	38	1	368	1	NGF	1	115829056	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	3862883	115829056	133421565	6	40861										
GJA5	0	genome.wustl.edu	37	chr1	147230581	147230581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgtgcagctctggactatgcCcacagaggggccagaaagct	13	11	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	147230581	147230581	C	T	SNP	GJA5	ENST00000271348	human	ensembl	69_37n	-1	known	missense	c.766	p.G256S	0.004	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140	56	0	0	167	27	13.92	-	-	-	T	147230581	C	T	147230581	3	4	410	1	0	0	0	0	1	0	0	0	6456	623	22	4	314	4	GJA5	1	147230581	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	31401525	147230581	102020040	7	40862										
PSMD4	0	genome.wustl.edu	37	chr1	151227268	151227268	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaggtggcaagatggtgttgGaaagcactatggtgtggtga	17	3	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	151227268	151227268	G	C	SNP	PSMD4	ENST00000368884	human	ensembl	69_37n	1	known	missense	c.10	p.E4Q	1.000	smart_VWF_A	pfam_Ubiquitin-int_motif,pfam_Ssl1-like,smart_VWF_A,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_VWF_A	-	no_errors	PSMD4	HGNC	ENSG00000159352	78	0	0	87	123	58.29	-	-	-	C	151227268	G	C	151227268	3	2	410	1	0	0	0	0	1	0	0	0	12780	1175	41	2	12	2	PSMD4	1	151227268	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	3996687	151227268	98023353	8	40863										
HCN3	0	genome.wustl.edu	37	chr1	155255534	155255534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggagatcattaacttcacctGtcggggcctggtggcccaca	12	12	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	155255534	155255534	G	C	SNP	HCN3	ENST00000368358	human	ensembl	69_37n	1	known	missense	c.1256	p.C419S	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630	17	0	0	33	9	21.43	-	-	-	C	155255534	G	C	155255534	3	2	410	1	0	0	0	0	1	0	0	0	7049	1377	48	4	1278	4	HCN3	1	155255534	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	4028266	155255534	93995087	9	40864										
KIAA0907	0	genome.wustl.edu	37	chr1	155899583	155899583	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttctacttcagctaccaccaGgtcatccttgcttttattgc	5	13	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	155899583	155899583	G	C	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	missense	c.304	p.L102V	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	101	0	0	118	23	16.31	-	-	-	C	155899583	G	C	155899583	3	2	410	1	0	0	0	0	1	0	0	0	8251	991	35	4	1588	4	KIAA0907	1	155899583	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	644049	155899583	93351038	10	40865										
TTC24	0	genome.wustl.edu	37	chr1	156551191	156551191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccctgaggatgtgccccggaGgccagaacctgagccctcaa	12	15	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	156551191	156551191	G	A	SNP	TTC24	ENST00000368236	human	ensembl	69_37n	1	known	missense	c.35	p.R12K	0.193	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC24	HGNC	ENSG00000187862	36	0	0	26	17	39.53	-	-	-	A	156551191	G	A	156551191	3	1	410	1	0	0	0	0	1	0	0	0	16789	1000	35	4	37	4	TTC24	1	156551191	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	651608	156551191	92699430	11	40866										
ETV3	0	genome.wustl.edu	37	chr1	157095097	157095097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgactcctcgctgctctcaaCcctctcccggttcttccgcc	6	20	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	157095097	157095097	C	T	SNP	ETV3	ENST00000368192	human	ensembl	69_37n	-1	known	missense	c.1075	p.V359I	0.351	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV3	HGNC	ENSG00000117036	29	0	0	32	15	31.91	-	-	-	T	157095097	C	T	157095097	3	4	410	1	0	0	0	0	1	0	0	0	5316	507	18	4	467	4	ETV3	1	157095097	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	543906	157095097	92155524	12	40867										
IGSF8	0	genome.wustl.edu	37	chr1	160063683	160063683	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cttgcccagacgaagctcccCtgcagccaatcgctcagcat	8	17	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	160063683	160063683	C	G	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	missense	c.721	p.G241R	0.990	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	30	0	0	31	7	18.42	-	-	-	G	160063683	C	G	160063683	3	3	410	1	0	0	0	0	1	0	0	0	7658	681	24	4	1136	4	IGSF8	1	160063683	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	2968586	160063683	89186938	13	40868										
F5	0	genome.wustl.edu	37	chr1	169498986	169498986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcatgtccataggcatgttgCtgtccttatgtagtattcct	8	9	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	169498986	169498986	C	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.5294	p.S1765T	0.991	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	70	0	0	117	20	14.6	-	-	-	G	169498986	C	G	169498986	3	3	410	1	0	0	0	0	1	0	0	0	5385	797	28	4	1435	4	F5	1	169498986	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	9435303	169498986	79751635	14	40869										
ASTN1	0	genome.wustl.edu	37	chr1	177001636	177001636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tttcattgcagccctgcaggGagtcgagggtgcgcgtgacc	15	11	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	177001636	177001636	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.821	p.S274F	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	39	0	0	56	10	14.93	-	-	-	A	177001636	G	A	177001636	3	1	410	1	0	0	0	0	1	0	0	0	1068	1174	41	2	3151	2	ASTN1	1	177001636	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	7502650	177001636	72248985	15	40870										
LAMC1	0	genome.wustl.edu	37	chr1	183083678	183083678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	actgacagcctgtgattgcaAtggtcgatcccaggaatgct	11	10	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	183083678	183083678	A	G	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.1034	p.N345S	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	46	0	0	37	25	40.32	-	-	-	G	183083678	A	G	183083678	3	3	410	1	0	0	0	0	1	0	0	0	8668	101	4	5	1052	5	LAMC1	1	183083678	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	6082042	183083678	66166943	16	40871										
CAPN2	0	genome.wustl.edu	37	chr1	223934702	223934702	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctaatcccctcttgtaggatCaacggatgctatgaagcgct	9	11	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	223934702	223934702	C	G	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	missense	c.564	p.I188M	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	37	0	0	25	39	60	-	-	-	G	223934702	C	G	223934702	3	3	410	1	0	0	0	0	1	0	0	0	2652	816	29	2	589	2	CAPN2	1	223934702	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	40851024	223934702	25315919	17	40872										
LYST	0	genome.wustl.edu	37	chr1	235860498	235860498	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccgtggggctggctgaagcaGaccacaggtactggagcact	15	11	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	235860498	235860498	G	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.10449	p.V3483	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	56	0	0	67	14	17.07	-	-	-	T	235860498	G	T	235860498	2	4	410	1	0	0	0	0	0	0	0	1	9195	929	33	2		2	LYST	1	235860498	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	11925796	235860498	13390123	18	40873										
ACTN2	0	genome.wustl.edu	37	chr1	236918429	236918429	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagaacaacatcgacaagctGgagggagaccatcagctcat	10	10	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	236918429	236918429	G	T	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.2085	p.L695	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	20	0	0	25	24	48.98	-	-	-	T	236918429	G	T	236918429	2	4	410	1	0	0	0	0	0	0	0	1	205	1335	47	4		4	ACTN2	1	236918429	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	1057931	236918429	12332192	19	40874										
KIF26B	0	genome.wustl.edu	37	chr1	245850803	245850803	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccccggtcactgacaacttCaggagggtcgtggatgggtg	15	10	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	245850803	245850803	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.4518	p.F1506	0.521	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	18	0	0	31	12	27.91	-	-	-	T	245850803	C	T	245850803	2	4	410	1	0	0	0	0	0	0	0	1	8347	825	29	2		2	KIF26B	1	245850803	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	8932374	245850803	3399818	20	40875										
OR13G1	0	genome.wustl.edu	37	chr1	247835593	247835593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gatataggtgtagattacagGagaatagtaaagggtcacca	12	4	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	247835593	247835593	G	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.751	p.P251T	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	54	0	0	65	19	22.35	-	-	-	T	247835593	G	T	247835593	3	4	410	1	0	0	0	0	1	0	0	0	11015	1174	41	2	176	2	OR13G1	1	247835593	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	1984790	247835593	1415028	21	40876										
DPYSL5	0	genome.wustl.edu	37	chr2	27165483	27165483	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aacatgcgctgccacggcgtGccactggtcaccatcagccg	11	16	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	27165483	27165483	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	silent	c.1305	p.V435	0.754	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	12	0	0	15	15	50	-	-	-	A	27165483	G	A	27165483	2	1	410	1	0	0	0	0	0	0	0	1	4785	1306	46	4		4	DPYSL5	2	27165483	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09		27165483	216033890	22	40877										
C2orf16	0	genome.wustl.edu	37	chr2	27800889	27800889	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttagtccagagccactagatCaagtcacagaatctgcaagg	9	10	3	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	27800889	27800889	C	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.1450	p.Q484K	0.006	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	37	0	0	36	18	33.33	-	-	-	A	27800889	C	A	27800889	3	1	410	1	0	0	0	0	1	0	0	0	2177	827	29	2	1452	2	C2orf16	2	27800889	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	635406	27800889	215398484	23	40878										
BIRC6	0	genome.wustl.edu	37	chr2	32654312	32654312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tttctaaaggaatagaaccaTcttcagaaggttccaaacct	6	9	3	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	32654312	32654312	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.2971	p.S991P	0.980	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	74	0	0	55	11	16.67	-	-	-	C	32654312	T	C	32654312	3	2	410	1	0	0	0	0	1	0	0	0	1443	1435	50	5	3013	5	BIRC6	2	32654312	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	4853423	32654312	210545061	24	40879										
LHCGR	0	genome.wustl.edu	37	chr2	48915906	48915906	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaaagcatctggttcaggagCacatcggggtgtcttgggta	14	7	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	48915906	48915906	C	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.1030	p.A344P	1.000	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	72	0	0	45	48	51.61	-	-	-	G	48915906	C	G	48915906	3	3	410	1	0	0	0	0	1	0	0	0	8817	710	25	4	1073	4	LHCGR	2	48915906	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	16261594	48915906	194283467	25	40880										
USP34	0	genome.wustl.edu	37	chr2	61515816	61515816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aatttctgcactttacctctGttaatcgtggtatatgaaga	7	7	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	61515816	61515816	G	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.4745	p.T1582I	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	54	0	0	52	20	27.78	-	-	-	A	61515816	G	A	61515816	3	1	410	1	0	0	0	0	1	0	0	0	17162	1377	48	4	6083	4	USP34	2	61515816	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	12599910	61515816	181683557	26	40881										
CYP26B1	0	genome.wustl.edu	37	chr2	72360334	72360334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agcccgcagctcatcccgcaGcttctccagcacagtggggt	11	16	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	72360334	72360334	G	T	SNP	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	missense	c.964	p.L322M	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	12	0	0	7	4	36.36	-	-	-	T	72360334	G	T	72360334	3	4	410	1	0	0	0	0	1	0	0	0	4187	962	34	4	582	4	CYP26B1	2	72360334	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	10844518	72360334	170839039	27	40882										
LBX2	0	genome.wustl.edu	37	chr2	74725096	74725096	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcgtctgacaggtggggccgGgagtcagggccggcagggcc	20	11	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	74725096	74725096	G	A	SNP	LBX2	ENST00000377566	human	ensembl	69_37n	-1	known	silent	c.555	p.S185	0.007	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	LBX2	HGNC	ENSG00000179528	23	0	0	25	6	19.35	-	-	-	A	74725096	G	A	74725096	2	1	410	1	0	0	0	0	0	0	0	1	8708	1219	43	4		4	LBX2	2	74725096	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	2364762	74725096	168474277	28	40883										
TTN	0	genome.wustl.edu	37	chr2	179614480	179614480	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aattaacatccttaatatatAattggtggctacaattaact	4	6	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	179614480	179614480	A	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	nonsense	c.12647	p.L4216*	0.935	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0	5	7	58.33	-	-	-	T	179614480	A	T	179614480	4	4	410	1	0	0	0	0	0	1	0	0	16832	372	13	5	97650	5	TTN	2	179614480	Nonsense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	104889384	179614480	63584893	29	40884										
PTPRN	0	genome.wustl.edu	37	chr2	220155281	220155281	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttagagcggacaaggccaggCcgctggtcacggacatgctc	14	12	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	220155281	220155281	C	A	SNP	PTPRN	ENST00000295718	human	ensembl	69_37n	-1	known	silent	c.2847	p.R949	0.998	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356	43	0	0	5	71	93.42	-	-	-	A	220155281	C	A	220155281	2	1	410	1	0	0	0	0	0	0	0	1	12890	726	26	4		4	PTPRN	2	220155281	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	40540801	220155281	23044092	30	40885										
SP100	0	genome.wustl.edu	37	chr2	231334496	231334496	+	Frame_Shift_Del	DEL	A	A	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tacatatttttcccaaagttAaaaaaaaaaaagaagaagaa							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	231334496	231334496	A	-	DEL	SP100	ENST00000341950	human	ensembl	69_37n	1	known	frame_shift_del	c.1350	p.K453fs	0.007	NULL	pfam_Sp100	-	no_errors	SP100	HGNC	ENSG00000067066	8	0	0	12	2	14.29	-	-	-	-	231334496	A	-	231334496	7	5	410	1	0	1	0	1	0	0	0	0	15049	377	13	0		0	SP100	2	231334496	Frame_Shift_Del	DEL	A	TCGA-AR-A256-01A-11D-A167-09	11179215	231334496	11864877	31	40886										
UGT1A4	0	genome.wustl.edu	37	chr2	234627956	234627956	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtggggcggtgctggctaagTacctgtcgattcctgctgtg	16	9	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	234627956	234627956	T	C	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	missense	c.490	p.Y164H	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	97	0	0	17	126	88.11	-	-	-	C	234627956	T	C	234627956	3	2	410	1	0	0	0	0	1	0	0	0	17044	1638	57	5	492	5	UGT1A4	2	234627956	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	3293460	234627956	8571417	32	40887										
SYN2	0	genome.wustl.edu	37	chr3	12203643	12203643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagaagattggcaacaactaCaaggcttacatgtgagtaag	10	7	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	12203643	12203643	C	T	SNP	SYN2	ENST00000426379	human	ensembl	69_37n	1	known	missense	c.995	p.T332I	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYN2	HGNC	ENSG00000157152	35	0	0	53	7	11.67	-	-	-	T	12203643	C	T	12203643	3	4	410	1	0	0	0	0	1	0	0	0	15533	489	17	4	996	4	SYN2	3	12203643	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09		12203643	185818787	33	40888										
LZTFL1	0	genome.wustl.edu	37	chr3	45872443	45872443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagctgtaaatcttgcagtgCtttttctagttttgactttt	7	6	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	45872443	45872443	C	G	SNP	LZTFL1	ENST00000296135	human	ensembl	69_37n	-1	known	missense	c.562	p.A188P	0.108	NULL	NULL	-	no_errors	LZTFL1	HGNC	ENSG00000163818	151	0	0	31	95	74.8	-	-	-	G	45872443	C	G	45872443	3	3	410	1	0	0	0	0	1	0	0	0	9203	797	28	4	353	4	LZTFL1	3	45872443	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	33668800	45872443	152149987	34	40889										
DALRD3	0	genome.wustl.edu	37	chr3	49054878	49054878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtcactaaccaggcctgggtGgctgtcctcgggccaatgcc	13	14	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	49054878	49054878	G	A	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.787	p.H263Y	0.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	36	0	0	21	13	38.24	-	-	-	A	49054878	G	A	49054878	3	1	410	1	0	0	0	0	1	0	0	0	4261	1348	47	4	880	4	DALRD3	3	49054878	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	3182435	49054878	148967552	35	40890										
RBM15B	0	genome.wustl.edu	37	chr3	51430822	51430824	+	In_Frame_Del	DEL	CCA	CCA	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	catggggctgaggaacggggCcaccaccaccaccaccacga							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	51430822	51430824	CCA	-	DEL	RBM15B	ENST00000323686	human	ensembl	69_37n	1	novel	in_frame_del	c.1992_1994	p.H668in_frame_del	1.000:1.000:0.998	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837	13	0	0	12	2	14.29	-	-	-	-	51430824	CCA	-	51430822	7	5	410	1	0	1	0	1	0	0	0	0	13200	726	26	0	1994	0	RBM15B	3	51430822	In_Frame_Del	DEL	CCA	TCGA-AR-A256-01A-11D-A167-09	2375944	51430822	146591608	36	40891										
ITIH1	0	genome.wustl.edu	37	chr3	52822258	52822258	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtgcccccagtggacacagaCcctcacttcatcatccacgt	7	17	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	52822258	52822258	C	A	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	missense	c.2016	p.D672E	0.973	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	59	0	0	45	30	40	-	-	-	A	52822258	C	A	52822258	3	1	410	1	0	0	0	0	1	0	0	0	7957	506	18	4	2086	4	ITIH1	3	52822258	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	1391436	52822258	145200172	37	40892										
SYNPR	0	genome.wustl.edu	37	chr3	63466633	63466633	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gcgtttgcctacccattcagGtagggaatggtggttcatgc	13	9	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	63466633	63466633	G	A	SNP	SYNPR	ENST00000478300	human	ensembl	69_37n	1	known	splice_site	c.209+1	e3+1	1.000	-	-	-	no_errors	SYNPR	HGNC	ENSG00000163630	51	0	0	20	13	39.39	-	-	-	A	63466633	G	A	63466633	5	1	410	1	0	0	0	0	0	0	1	0	15551	1275	44	4	248	4	SYNPR	3	63466633	Splice_Site	SNP	G	TCGA-AR-A256-01A-11D-A167-09	10644375	63466633	134555797	38	40893										
SLC12A8	0	genome.wustl.edu	37	chr3	124829135	124829135	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cccatgcaggaagccagggaCgagatgtataagcccaaaag	12	10	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	124829135	124829135	C	G	SNP	SLC12A8	ENST00000423114	human	ensembl	69_37n	-1	known	silent	c.1044	p.S348	0.370	pfam_AA-permease_dom	pfam_AA-permease_dom,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SLC12A8	HGNC	ENSG00000221955	31	0	0	38	19	33.33	-	-	-	G	124829135	C	G	124829135	2	3	410	1	0	0	0	0	0	0	0	1	14478	523	19	3		3	SLC12A8	3	124829135	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	61362502	124829135	73193295	39	40894										
SI	0	genome.wustl.edu	37	chr3	164733798	164733798	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgtcaacaaactgaggaaggTcctggaatgcttcaccaatt	9	9	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	164733798	164733798	T	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.3830	p.D1277V	0.002	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	85	0	0	75	44	36.36	-	-	-	A	164733798	T	A	164733798	3	1	410	1	0	0	0	0	1	0	0	0	14386	1667	58	5	1721	5	SI	3	164733798	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	39904663	164733798	33288632	40	40895										
MECOM	0	genome.wustl.edu	37	chr3	168834507	168834507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaggtttgaaaactgagtatAggatttatggcagacctcac	10	6	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	168834507	168834507	A	G	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.1153	p.Y385H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	175	0	0	139	102	42.32	-	-	-	G	168834507	A	G	168834507	3	3	410	1	0	0	0	0	1	0	0	0	9493	420	15	5	2606	5	MECOM	3	168834507	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	4100709	168834507	29187923	41	40896										
TNIK	0	genome.wustl.edu	37	chr3	170875269	170875269	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctcctccagccgccgcctctGctctttctgctcctcgatgc	7	20	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	170875269	170875269	G	C	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.1201	p.Q401E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	13	0	0	23	15	39.47	-	-	-	C	170875269	G	C	170875269	3	2	410	1	0	0	0	0	1	0	0	0	16408	1328	46	4	2969	4	TNIK	3	170875269	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	2040762	170875269	27147161	42	40897										
DCUN1D1	0	genome.wustl.edu	37	chr3	182665361	182665361	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	caaaaatttattccataagtCtaagaatttaaatcttccat	2	7	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	182665361	182665361	C	T	SNP	DCUN1D1	ENST00000292782	human	ensembl	69_37n	-1	known	missense	c.580	p.D194N	1.000	pfam_PONY_dom	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D1	HGNC	ENSG00000043093	57	0	0	51	15	22.39	-	-	-	T	182665361	C	T	182665361	3	4	410	1	0	0	0	0	1	0	0	0	4344	913	32	2	211	2	DCUN1D1	3	182665361	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	11790092	182665361	15357069	43	40898										
CPN2	0	genome.wustl.edu	37	chr3	194063051	194063051	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccagcatgttgaagttgagGgtgagcttgcccagcgaggt	15	8	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	194063051	194063051	G	A	SNP	CPN2	ENST00000323830	human	ensembl	69_37n	-1	known	silent	c.381	p.T127	0.656	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772	38	0	0	23	24	50	-	-	-	A	194063051	G	A	194063051	2	1	410	1	0	0	0	0	0	0	0	1	3840	1219	43	4		4	CPN2	3	194063051	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	11397690	194063051	3959379	44	40899										
MFI2	0	genome.wustl.edu	37	chr3	196744075	196744075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagatggcactgcctccactCggtgacatcggcccggctac	11	16	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	196744075	196744075	C	T	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.799	p.E267K	0.860	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	11	0	0	7	8	53.33	-	-	-	T	196744075	C	T	196744075	3	4	410	1	0	0	0	0	1	0	0	0	9593	893	31	1	1457	1	MFI2	3	196744075	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	2681024	196744075	1278355	45	40900										
EVC2	0	genome.wustl.edu	37	chr4	5624640	5624640	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctccatcaggctcctcttctGgtgcaggtactggccggcat	11	14	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	5624640	5624640	G	A	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	nonsense	c.2125	p.Q709*	0.838	NULL	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	17	0	0	7	4	36.36	-	-	-	A	5624640	G	A	5624640	4	1	410	1	0	0	0	0	0	1	0	0	5323	1357	47	4	1837	4	EVC2	4	5624640	Nonsense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09		5624640	185529636	46	40901										
JAKMIP1	0	genome.wustl.edu	37	chr4	6055709	6055709	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	acatctgagagctttacatgAatttcagtttgggttcaaag	9	6	3	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	6055709	6055709	A	C	SNP	JAKMIP1	ENST00000282924	human	ensembl	69_37n	-1	known	missense	c.1874	p.F625C	1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969	103	0	0	49	37	43.02	-	-	-	C	6055709	A	C	6055709	3	2	410	1	0	0	0	0	1	0	0	0	7994	246	9	5	732	5	JAKMIP1	4	6055709	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	431069	6055709	185098567	47	40902										
ARAP2	0	genome.wustl.edu	37	chr4	36130231	36130231	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcagagagaaaacttttcaaCacagccgtcacatcttcaag	6	11	5	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	36130231	36130231	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	silent	c.3564	p.V1188	0.364	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	77	0	0	9	31	77.5	-	-	-	A	36130231	C	A	36130231	2	1	410	1	0	0	0	0	0	0	0	1	841	465	17	4		4	ARAP2	4	36130231	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	30074522	36130231	155024045	48	40903										
CLOCK	0	genome.wustl.edu	37	chr4	56345865	56345865	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atcaaaaatactactgtcatCtctaaaagaaagcggataga	6	7	3	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	56345865	56345865	C	A	SNP	CLOCK	ENST00000309964	human	ensembl	69_37n	-1	known	missense	c.49	p.D17Y	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852	115	0	0	17	55	76.39	-	-	-	A	56345865	C	A	56345865	3	1	410	1	0	0	0	0	1	0	0	0	3579	927	32	2	2567	2	CLOCK	4	56345865	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	20215634	56345865	134808411	49	40904										
NFKB1	0	genome.wustl.edu	37	chr4	103500040	103500040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgtgctgtatggccctagatCgggaaaaagagctaatccgc	12	9	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	103500040	103500040	C	T	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	missense	c.574	p.R192W	0.071	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	55	0	0	17	44	72.13	-	-	-	T	103500040	C	T	103500040	3	4	410	1	0	0	0	0	1	0	0	0	10447	875	31	1	600	1	NFKB1	4	103500040	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	47154175	103500040	87654236	50	40905										
SYNPO2	0	genome.wustl.edu	37	chr4	119951302	119951302	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctgacgttgacgacaacacaCaagttgtgaactttgactgg	10	9	0	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	119951302	119951302	C	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.1372	p.Q458K	0.010	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	69	0	0	100	15	13.04	-	-	-	A	119951302	C	A	119951302	3	1	410	1	0	0	0	0	1	0	0	0	15549	479	17	4	1386	4	SYNPO2	4	119951302	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	16451262	119951302	71202974	51	40906										
FBXW7	0	genome.wustl.edu	37	chr4	153247168	153247168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gagatcttacctgtaatgaaTagactctattagtatgcccc	7	9	2	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	153247168	153247168	T	C	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1634	p.Y545C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	62	0	0	8	22	73.33	-	-	-	C	153247168	T	C	153247168	3	2	410	1	0	0	0	0	1	0	0	0	5815	1406	49	5	501	5	FBXW7	4	153247168	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	33295866	153247168	37907108	52	40907										
ADCY2	0	genome.wustl.edu	37	chr5	7709446	7709446	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggggcagccaagccctttgcAcacctacatcacagggacag	11	14	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	7709446	7709446	A	G	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.1524	p.A508	0.588	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	36	0	0	27	13	32.5	-	-	-	G	7709446	A	G	7709446	2	3	410	1	0	0	0	0	0	0	0	1	294	146	6	5		5	ADCY2	5	7709446	Silent	SNP	A	TCGA-AR-A256-01A-11D-A167-09		7709446	173205814	53	40908										
FER	0	genome.wustl.edu	37	chr5	108516525	108516525	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctttggaatgtctcgtcaagAggatggtggagtgtattcat	13	5	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	108516525	108516525	A	G	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	missense	c.2126	p.E709G	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	61	0	0	33	25	43.1	-	-	-	G	108516525	A	G	108516525	3	3	410	1	0	0	0	0	1	0	0	0	5859	304	11	5	2188	5	FER	5	108516525	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	100807079	108516525	72398735	54	40909										
ZNF608	0	genome.wustl.edu	37	chr5	124080554	124080556	+	In_Frame_Del	DEL	CTT	CTT	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atctcaaatttctgtctgtcCttctccaaatcagcgtccaa							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	124080554	124080556	CTT	-	DEL	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	in_frame_del	c.129_127	p.K43in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	73	0	0	23	75	72.82	-	-	-	-	124080556	CTT	-	124080554	7	5	410	1	0	1	0	1	0	0	0	0	18130	680	24	0	4445	0	ZNF608	5	124080554	In_Frame_Del	DEL	CTT	TCGA-AR-A256-01A-11D-A167-09	15564029	124080554	56834706	55	40910										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769218	140769218	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggctacttggtgaccaaggtAgtggcggtggacgcagactc	16	9	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	140769218	140769218	A	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.1767	p.V589	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	15	0	0	3	18	85.71	-	-	-	T	140769218	A	T	140769218	2	4	410	1	0	0	0	0	0	0	0	1	11638	407	15	5		5	PCDHGB4	5	140769218	Silent	SNP	A	TCGA-AR-A256-01A-11D-A167-09	16688664	140769218	40146042	56	40911										
ARAP3	0	genome.wustl.edu	37	chr5	141051281	141051281	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gggggtagggtccctgcccaGaagcggttggcacgatcatt	16	10	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	141051281	141051281	G	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.1710	p.F570L	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	32	0	0	2	22	91.67	-	-	-	T	141051281	G	T	141051281	3	4	410	1	0	0	0	0	1	0	0	0	842	933	33	2	3012	2	ARAP3	5	141051281	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	282063	141051281	39863979	57	40912										
NSD1	0	genome.wustl.edu	37	chr5	176562116	176562116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cggcccaggatggatcagacCtgtgaactacccagaagaaa	11	11	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	176562116	176562116	C	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	silent	c.12	p.T4	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	26	0	0	26	11	29.73	-	-	-	T	176562116	C	T	176562116	2	4	410	1	0	0	0	0	0	0	0	1	10742	668	24	4		4	NSD1	5	176562116	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	35510835	176562116	4353144	58	40913										
DOM3Z	0	genome.wustl.edu	37	chr6	31937797	31937797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctcccaagagaagagatgaaCgagcctggggggcagatgga	16	8	0	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	31937797	31937797	C	T	SNP	DOM3Z	ENST00000337523	human	ensembl	69_37n	-1	known	missense	c.1048	p.V350I	0.996	NULL	pfam_RAI1	-	no_errors	DOM3Z	HGNC	ENSG00000204348	16	0	0	13	19	59.38	-	-	-	T	31937797	C	T	31937797	3	4	410	1	0	0	0	0	1	0	0	0	4740	536	19	1	146	1	DOM3Z	6	31937797	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09		31937797	139177270	59	40914										
MDGA1	0	genome.wustl.edu	37	chr6	37620061	37620061	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggtcctggcccagctggatGttctcactctctttgatcac	9	13	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	37620061	37620061	G	A	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	silent	c.1038	p.N346	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	16	0	0	12	13	52	-	-	-	A	37620061	G	A	37620061	2	1	410	1	0	0	0	0	0	0	0	1	9477	1368	48	4		4	MDGA1	6	37620061	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	5682264	37620061	133495006	60	40915										
XPO5	0	genome.wustl.edu	37	chr6	43535019	43535020	+	Frame_Shift_Ins	INS	-	-	C													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttttcagcagtgatgtgactINScatagacacccagtcaatat							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	43535019	43535020	-	C	INS	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	frame_shift_ins	c.721_720	p.S240fs	0.998:1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	49	0	0	35	16	31.37	-	-	-	C	43535020	-	C	43535019	7	5	410	1	0	1	1	0	0	0	0	0	17544	1551	54	0	2997	0	XPO5	6	43535019	Frame_Shift_Ins	INS	-	TCGA-AR-A256-01A-11D-A167-09	5914958	43535019	127580048	61	40916	337	2								
XPO5	0	genome.wustl.edu	37	chr6	43535023	43535025	+	In_Frame_Del	DEL	AGA	AGA	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcagcagtgatgtgactcatAgacacccagtcaatatagcc							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	43535023	43535025	AGA	-	DEL	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	in_frame_del	c.717_715	p.S239in_frame_del	0.304:0.952:0.935	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	47	0	0	34	16	32	-	-	-	-	43535025	AGA	-	43535023	7	5	410	1	0	1	0	1	0	0	0	0	17544	407	15	0	3001	0	XPO5	6	43535023	In_Frame_Del	DEL	AGA	TCGA-AR-A256-01A-11D-A167-09	4	43535023	127580044	62	40917	337	2								
PAQR8	0	genome.wustl.edu	37	chr6	52268806	52268806	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gcttatttcttctcctgcccCgtgcctgagaagtacttccc	7	15	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	52268806	52268806	C	G	SNP	PAQR8	ENST00000360726	human	ensembl	69_37n	1	known	silent	c.795	p.P265	0.024	pfam_HlyIII-related	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915	46	0	0	35	34	49.28	-	-	-	G	52268806	C	G	52268806	2	3	410	1	0	0	0	0	0	0	0	1	11514	639	23	3		3	PAQR8	6	52268806	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	8733783	52268806	118846261	63	40918										
BAI3	0	genome.wustl.edu	37	chr6	70071303	70071303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgcagaatttgccctttgaaCctcgcacagctgtgaagaat	9	10	0	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	70071303	70071303	C	A	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.4138	p.P1380T	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	46	0	0	16	19	54.29	-	-	-	A	70071303	C	A	70071303	3	1	410	1	0	0	0	0	1	0	0	0	1304	507	18	4	4244	4	BAI3	6	70071303	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	17802497	70071303	101043764	64	40919										
VGLL2	0	genome.wustl.edu	37	chr6	117589357	117589357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctgaacagaaactagcctatTattccaaaatgcaggaagcg	8	9	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	117589357	117589357	T	C	SNP	VGLL2	ENST00000326274	human	ensembl	69_37n	1	known	missense	c.94	p.Y32H	1.000	NULL	pfam_Vg_Tdu	-	no_errors	VGLL2	HGNC	ENSG00000170162	17	0	0	2	11	84.62	-	-	-	C	117589357	T	C	117589357	3	2	410	1	0	0	0	0	1	0	0	0	17256	1754	61	5	100	5	VGLL2	6	117589357	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	47518054	117589357	53525710	65	40920										
STXBP5	0	genome.wustl.edu	37	chr6	147636833	147636833	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagctcatgtcattatttatAgattcagcaagcaggaagta	8	7	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	147636833	147636833	A	C	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	silent	c.1585	p.R529	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	64	0	0	25	14	35.9	-	-	-	C	147636833	A	C	147636833	2	2	410	1	0	0	0	0	0	0	0	1	15447	412	15	5		5	STXBP5	6	147636833	Silent	SNP	A	TCGA-AR-A256-01A-11D-A167-09	30047476	147636833	23478234	66	40921										
TCP10	0	genome.wustl.edu	37	chr6	167789534	167789534	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtgattttctgccaccggagTtttgcggacttcgggaagat	13	8	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	167789534	167789534	T	A	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.608	p.N203I	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	57	0	0	5	28	84.85	-	-	-	A	167789534	T	A	167789534	3	1	410	1	0	0	0	0	1	0	0	0	15805	1725	60	5	384	5	TCP10	6	167789534	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	20152701	167789534	3325533	67	40922										
RPA3	0	genome.wustl.edu	37	chr7	7676652	7676652	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	caatcatgttgcacaatcccTaaaggataaaactgagggaa	8	8	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	7676652	7676652	T	A	SNP	RPA3	ENST00000223129	human	ensembl	69_37n	-1	known	missense	c.345	p.L115F	0.992	superfamily_NA-bd_OB-fold-like	pfam_Rep_factor-A_3,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA3	HGNC	ENSG00000106399	68	0	0	11	31	73.81	-	-	-	A	7676652	T	A	7676652	3	1	410	1	0	0	0	0	1	0	0	0	13624	1519	53	5	24	5	RPA3	7	7676652	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09		7676652	151462011	68	40923										
STK31	0	genome.wustl.edu	37	chr7	23809335	23809335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgatgaaatcctagagaagaCtgagtcaagtgtctgcaaag	11	6	2	5			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	23809335	23809335	C	G	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.1673	p.T558S	0.998	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	63	0	0	10	37	78.72	-	-	-	G	23809335	C	G	23809335	3	3	410	1	0	0	0	0	1	0	0	0	15387	565	20	4	1723	4	STK31	7	23809335	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	16132683	23809335	135329328	69	40924										
MUC17	0	genome.wustl.edu	37	chr7	100696289	100696289	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gcgtgaccacggaaactcacTggtacagtggggagacctgt	14	10	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	100696289	100696289	T	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.13126	p.W4376R	1.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	32	0	0	24	21	46.67	-	-	-	A	100696289	T	A	100696289	3	1	410	1	0	0	0	0	1	0	0	0	10046	1580	55	5	13164	5	MUC17	7	100696289	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	76886954	100696289	58442374	70	40925										
SERPINE1	0	genome.wustl.edu	37	chr7	100777023	100777023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	actacgacatcctggaactgCcctaccacggggacaccctc	8	17	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	100777023	100777023	C	G	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	missense	c.748	p.P250A	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	50	0	0	41	30	42.25	-	-	-	G	100777023	C	G	100777023	3	3	410	1	0	0	0	0	1	0	0	0	14199	739	26	4	762	4	SERPINE1	7	100777023	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	80734	100777023	58361640	71	40926										
PNPLA8	0	genome.wustl.edu	37	chr7	108131874	108131874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cttaggacatgtggggtttcTtgctgtttcaatcatcagtg	11	7	4	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	108131874	108131874	T	C	SNP	PNPLA8	ENST00000257694	human	ensembl	69_37n	-1	known	missense	c.1663	p.R555G	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241	88	0	0	154	23	12.99	-	-	-	C	108131874	T	C	108131874	3	2	410	1	0	0	0	0	1	0	0	0	12245	1617	56	5	701	5	PNPLA8	7	108131874	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	7354851	108131874	51006789	72	40927										
GCC1	0	genome.wustl.edu	37	chr7	127222558	127222558	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttctgcgtcctggcagcccaGaggccaaggccacagaacgc	12	15	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	127222558	127222558	G	A	SNP	GCC1	ENST00000321407	human	ensembl	69_37n	-1	known	missense	c.1838	p.S613F	0.128	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562	29	0	0	60	19	24.05	-	-	-	A	127222558	G	A	127222558	3	1	410	1	0	0	0	0	1	0	0	0	6335	942	33	2	493	2	GCC1	7	127222558	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	19090684	127222558	31916105	73	40928										
CNTNAP2	0	genome.wustl.edu	37	chr7	146471394	146471394	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gagccacttgtctctggactCccccatgtggctttcagcag	10	14	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	146471394	146471394	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	silent	c.129	p.L43	0.593	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	76	0	0	20	10	33.33	-	-	-	T	146471394	C	T	146471394	2	4	410	1	0	0	0	0	0	0	0	1	3677	842	30	2		2	CNTNAP2	7	146471394	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	19248836	146471394	12667269	74	40929										
ESCO2	0	genome.wustl.edu	37	chr8	27634128	27634128	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aatccactggagagaaagctGataaaagagagtagatctac	10	6	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	27634128	27634128	G	C	SNP	ESCO2	ENST00000305188	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.993	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320	54	0	0	11	48	81.36	-	-	-	C	27634128	G	C	27634128	2	2	410	1	0	0	0	0	0	0	0	1	5286	1277	45	2		2	ESCO2	8	27634128	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09		27634128	118729894	75	40930										
TM2D2	0	genome.wustl.edu	37	chr8	38852899	38852899	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccaacatgatccactgggtCttcacattctataaattcat	4	11	4	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	38852899	38852899	C	G	SNP	TM2D2	ENST00000456397	human	ensembl	69_37n	-1	known	missense	c.253	p.D85H	1.000	NULL	pfam_TM2	-	no_errors	TM2D2	HGNC	ENSG00000169490	68	0	0	104	13	11.11	-	-	-	G	38852899	C	G	38852899	3	3	410	1	0	0	0	0	1	0	0	0	16059	913	32	2	403	2	TM2D2	8	38852899	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	11218771	38852899	107511123	76	40931										
TCEB1	0	genome.wustl.edu	37	chr8	74859004	74859004	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atactttcgatagcacatgtGaaggtatctctctaaaattg	7	7	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	74859004	74859004	G	A	SNP	TCEB1	ENST00000520242	human	ensembl	69_37n	-1	known	missense	c.200	p.S67L	1.000	pfam_Skp1_comp_POZ,superfamily_BTB/POZ_fold,smart_Skp1_comp	pfam_Skp1_comp_POZ,superfamily_BTB/POZ_fold,smart_Skp1_comp	-	no_errors	TCEB1	HGNC	ENSG00000154582	64	0	0	50	105	67.74	-	-	-	A	74859004	G	A	74859004	3	1	410	1	0	0	0	0	1	0	0	0	15774	1294	45	2	142	2	TCEB1	8	74859004	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	36006105	74859004	71505018	77	40932										
KCNV1	0	genome.wustl.edu	37	chr8	110980364	110980364	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gctcctagtacttgctctttCtctgcctttcagtcgcagca	7	14	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	110980364	110980364	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.1456	p.E486K	1.000	NULL	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	59	0	0	123	25	16.89	-	-	-	T	110980364	C	T	110980364	3	4	410	1	0	0	0	0	1	0	0	0	8148	922	32	2	50	2	KCNV1	8	110980364	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	36121360	110980364	35383658	78	40933										
KCNQ3	0	genome.wustl.edu	37	chr8	133182580	133182580	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttcaggtgagtccccacttgCctgaagaaaggaaaagagac	11	9	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	133182580	133182580	C	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	splice_site	c.1235+1	e8+1	1.000	-	-	-	no_errors	KCNQ3	HGNC	ENSG00000184156	19	0	0	26	11	29.73	-	-	-	A	133182580	C	A	133182580	5	1	410	1	0	0	0	0	0	0	1	0	8138	753	26	4	1414	4	KCNQ3	8	133182580	Splice_Site	SNP	C	TCGA-AR-A256-01A-11D-A167-09	22202216	133182580	13181442	79	40934										
COL22A1	0	genome.wustl.edu	37	chr8	139890242	139890242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cttgtaggcgcggtccctggGgcggccgccggcgtgtgggg	21	12	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	139890242	139890242	G	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.409	p.P137T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	15	0	0	16	9	36	-	-	-	T	139890242	G	T	139890242	3	4	410	1	0	0	0	0	1	0	0	0	3711	1232	43	4	4723	4	COL22A1	8	139890242	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	6707662	139890242	6473780	80	40935										
LINGO2	0	genome.wustl.edu	37	chr9	27950343	27950343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cgattgccttttaggcggagGgaacgcaggttaaagagatt	14	6	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	27950343	27950343	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	silent	c.327	p.S109	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	68	0	0	38	31	44.93	-	-	-	A	27950343	G	A	27950343	2	1	410	1	0	0	0	0	0	0	0	1	8871	1219	43	4		4	LINGO2	9	27950343	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09		27950343	113263088	81	40936										
UBE2R2	0	genome.wustl.edu	37	chr9	33900241	33900241	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agagtggagaactgccttctGaaaggtggaatcctactcag	12	8	2	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	33900241	33900241	G	A	SNP	UBE2R2	ENST00000263228	human	ensembl	69_37n	1	known	missense	c.334	p.E112K	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2R2	HGNC	ENSG00000107341	82	0	0	52	62	53.91	-	-	-	A	33900241	G	A	33900241	3	1	410	1	0	0	0	0	1	0	0	0	16968	1291	45	2	344	2	UBE2R2	9	33900241	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	5949898	33900241	107313190	82	40937										
KIAA0368	0	genome.wustl.edu	37	chr9	114176865	114176865	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggcatgatcctgcatatcagCcaaactctgagaggtgggca	12	10	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	114176865	114176865	C	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.2365	p.A789S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	39	0	0	22	15	40.54	-	-	-	A	114176865	C	A	114176865	3	1	410	1	0	0	0	0	1	0	0	0	8223	739	26	4	3816	4	KIAA0368	9	114176865	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	80276624	114176865	27036566	83	40938										
FKBP15	0	genome.wustl.edu	37	chr9	115931533	115931533	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgggaatgatggctgggtctGagggctgctcctgcaactgt	16	8	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	115931533	115931533	G	C	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	silent	c.3456	p.L1152	0.000	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	62	0	0	38	30	44.12	-	-	-	C	115931533	G	C	115931533	2	2	410	1	0	0	0	0	0	0	0	1	5951	1277	45	2		2	FKBP15	9	115931533	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	1754668	115931533	25281898	84	40939										
PRPF4	0	genome.wustl.edu	37	chr9	116053191	116053191	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccacagctatcacattgcaAccggcagtggtgacaacacc	8	14	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	116053191	116053191	A	C	SNP	PRPF4	ENST00000374198	human	ensembl	69_37n	1	known	missense	c.1270	p.T424P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_PRP4,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875	62	0	0	53	32	37.65	-	-	-	C	116053191	A	C	116053191	3	2	410	1	0	0	0	0	1	0	0	0	12651	43	2	5	1320	5	PRPF4	9	116053191	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	121658	116053191	25160240	85	40940										
MAPKAP1	0	genome.wustl.edu	37	chr9	128246850	128246850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aatcctcctcaaaaaccccgTctgcccttgaacctggggag	8	15	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	128246850	128246850	T	C	SNP	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	missense	c.1079	p.D360G	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	68	0	0	29	39	57.35	-	-	-	C	128246850	T	C	128246850	3	2	410	1	0	0	0	0	1	0	0	0	9359	1667	58	5	505	5	MAPKAP1	9	128246850	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	12193659	128246850	12966581	86	40941										
TBC1D13	0	genome.wustl.edu	37	chr9	131553046	131553046	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agggcggactgcggtgcctcTgctggaaggtgggtgtgcct	19	9	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	131553046	131553046	T	C	SNP	TBC1D13	ENST00000372648	human	ensembl	69_37n	1	known	missense	c.130	p.C44R	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021	37	0	0	9	34	79.07	-	-	-	C	131553046	T	C	131553046	3	2	410	1	0	0	0	0	1	0	0	0	15694	1580	55	5	140	5	TBC1D13	9	131553046	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	3306196	131553046	9660385	87	40942										
ITIH5	0	genome.wustl.edu	37	chr10	7618855	7618855	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccaccagcttccccgcaatGatgatctccgagccgttgaa	8	15	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	7618855	7618855	G	T	SNP	ITIH5	ENST00000256861	human	ensembl	69_37n	-1	known	silent	c.1539	p.I513	0.892	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	51	0	0	32	26	44.83	-	-	-	T	7618855	G	T	7618855	2	4	410	1	0	0	0	0	0	0	0	1	7961	1280	45	2		2	ITIH5	10	7618855	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09		7618855	127915892	88	40943										
ENKUR	0	genome.wustl.edu	37	chr10	25284628	25284628	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggctcaagatcatgcttgtCtccagttcttttatcaacat	6	10	5	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	25284628	25284628	C	T	SNP	ENKUR	ENST00000331161	human	ensembl	69_37n	-1	known	missense	c.394	p.D132N	1.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023	90	0	0	82	34	29.06	-	-	-	T	25284628	C	T	25284628	3	4	410	1	0	0	0	0	1	0	0	0	5157	913	32	2	392	2	ENKUR	10	25284628	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	17665773	25284628	110250119	89	40944										
C10orf68	0	genome.wustl.edu	37	chr10	33000568	33000568	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctcatgatgaagaatcaggtGaaaatcctatgcttaaacat	7	7	2	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	33000568	33000568	G	C	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	missense	c.400	p.E134Q	0.001	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	44	0	0	33	8	19.51	-	-	-	C	33000568	G	C	33000568	3	2	410	1	0	0	0	0	1	0	0	0	1623	1291	45	2	418	2	C10orf68	10	33000568	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	7715940	33000568	102534179	90	40945										
RASSF4	0	genome.wustl.edu	37	chr10	45487443	45487443	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaagagaaataatcaaactgAccatgaagtaagcagcactt	7	7	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	45487443	45487443	A	T	SNP	RASSF4	ENST00000334940	human	ensembl	69_37n	1	known	missense	c.925	p.T309S	1.000	pfscan_SARAH	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF4	HGNC	ENSG00000107551	56	0	0	25	10	28.57	-	-	-	T	45487443	A	T	45487443	3	4	410	1	0	0	0	0	1	0	0	0	13171	275	10	5	932	5	RASSF4	10	45487443	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	12486875	45487443	90047304	91	40946										
GPRIN2	0	genome.wustl.edu	37	chr10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gccgggaacagaggccagagCtccgcaagactgccagcagc	14	14	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	8	0	0	8	4	33.33	-	-	-	G	46998995	C	G	46998995	3	3	410	1	0	0	0	0	1	0	0	0	6781	797	28	4	117	4	GPRIN2	10	46998995	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	1511552	46998995	88535752	92	40947										
GPRIN2	0	genome.wustl.edu	37	chr10	46999030	46999030	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agcagcaccgtgtggcaggcCcagctgggcgaggccagcac	16	14	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	46999030	46999030	C	T	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	silent	c.150	p.A50	0.872	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	8	0	0	10	4	28.57	-	-	-	T	46999030	C	T	46999030	2	4	410	1	0	0	0	0	0	0	0	1	6781	610	22	4		4	GPRIN2	10	46999030	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	35	46999030	88535717	93	40948										
FRMPD2	0	genome.wustl.edu	37	chr10	49386172	49386172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cactgatttctggaggtgatGgaggacaagaagaaccagca	13	7	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	49386172	49386172	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2813	p.P938L	0.001	superfamily_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	64	0	0	29	23	44.23	-	-	-	A	49386172	G	A	49386172	3	1	410	1	0	0	0	0	1	0	0	0	6107	1348	47	4	1148	4	FRMPD2	10	49386172	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	2387142	49386172	86148575	94	40949										
ANK3	0	genome.wustl.edu	37	chr10	61831529	61831529	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggtttcggtttcctcgagaGgtgggcataaacctacataa	11	8	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	61831529	61831529	G	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.9110	p.P3037R	0.934	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	31	0	0	15	11	42.31	-	-	-	C	61831529	G	C	61831529	3	2	410	1	0	0	0	0	1	0	0	0	622	1000	35	4	4364	4	ANK3	10	61831529	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	12445357	61831529	73703218	95	40950										
RUFY2	0	genome.wustl.edu	37	chr10	70153888	70153888	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tacatagaaaaatcaatcacTccaacctgaagtaaataaag	4	8	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	70153888	70153888	T	A	SNP	RUFY2	ENST00000466493	human	ensembl	69_37n	-1	known	missense	c.569	p.E190V	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RUFY2	HGNC	ENSG00000204130	65	0	0	28	10	26.32	-	-	-	A	70153888	T	A	70153888	3	1	410	1	0	0	0	0	1	0	0	0	13825	1538	54	5	1457	5	RUFY2	10	70153888	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	8322359	70153888	65380859	96	40951										
IDE	0	genome.wustl.edu	37	chr10	94274755	94274755	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagtagctcttgtcttacatCaatgccttcttggtttggtc	8	10	4	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	94274755	94274755	C	G	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.706	p.D236H	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	75	0	0	45	40	47.06	-	-	-	G	94274755	C	G	94274755	3	3	410	1	0	0	0	0	1	0	0	0	7547	826	29	2	2437	2	IDE	10	94274755	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	24120867	94274755	41259992	97	40952										
PPRC1	0	genome.wustl.edu	37	chr10	103909715	103909715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagactttgacccagcacctGtaaagagcaaatttgattct	7	9	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	103909715	103909715	G	A	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.4924	p.V1642I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	49	0	0	36	19	34.55	-	-	-	A	103909715	G	A	103909715	3	1	410	1	0	0	0	0	1	0	0	0	12487	1377	48	4	4978	4	PPRC1	10	103909715	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	9634960	103909715	31625032	98	40953										
HSPA12A	0	genome.wustl.edu	37	chr10	118439100	118439100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagggcagggtgatgttcagCgggttagttctgtctggggc	18	6	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	118439100	118439100	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	silent	c.1200	p.P400	0.001	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	61	0	0	35	41	53.95	-	-	-	T	118439100	C	T	118439100	2	4	410	1	0	0	0	0	0	0	0	1	7457	755	27	1		1	HSPA12A	10	118439100	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	14529385	118439100	17095647	99	40954										
EPS8L2	0	genome.wustl.edu	37	chr11	726965	726965	+	Frame_Shift_Del	DEL	G	G	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcattccatgaatcagaggaGgggggaggacagctaggccc							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	726965	726965	G	-	DEL	EPS8L2	ENST00000318562	human	ensembl	69_37n	1	known	frame_shift_del	c.2132	p.E713fs	0.028	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106	26	0	0	6	12	60	-	-	-	-	726965	G	-	726965	7	5	410	1	0	1	0	1	0	0	0	0	5233	1000	35	0	2210	0	EPS8L2	11	726965	Frame_Shift_Del	DEL	G	TCGA-AR-A256-01A-11D-A167-09		726965	134279551	100	40955										
BRSK2	0	genome.wustl.edu	37	chr11	1464595	1464595	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atgacggccggaaggcggacGtgtggagctgcggcgtcatc	18	10	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	1464595	1464595	G	T	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	missense	c.733	p.V245L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	11	0	0	4	15	78.95	-	-	-	T	1464595	G	T	1464595	3	4	410	1	0	0	0	0	1	0	0	0	1532	1145	40	3	621	3	BRSK2	11	1464595	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	737630	1464595	133541921	101	40956										
OSBPL5	0	genome.wustl.edu	37	chr11	3147733	3147733	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttcgtggcagagcttggggtCgggggcccttcatccctggg	17	11	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	3147733	3147733	C	A	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	silent	c.189	p.P63	0.992	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	28	0	0	5	27	84.38	-	-	-	A	3147733	C	A	3147733	2	1	410	1	0	0	0	0	0	0	0	1	11353	871	31	3		3	OSBPL5	11	3147733	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	1683138	3147733	131858783	102	40957										
NLRP14	0	genome.wustl.edu	37	chr11	7063859	7063859	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaaggcaatgttagattgggCagagggcagtctctaccagc	13	8	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	7063859	7063859	C	G	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	missense	c.602	p.A201G	1.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	60	0	0	28	7	20	-	-	-	G	7063859	C	G	7063859	3	3	410	1	0	0	0	0	1	0	0	0	10548	710	25	4	612	4	NLRP14	11	7063859	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	3916126	7063859	127942657	103	40958										
CTR9	0	genome.wustl.edu	37	chr11	10792118	10792118	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tagctacctctgtcctgaaaGatgaaaaaagtaatctgaag	8	7	2	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	10792118	10792118	G	A	SNP	CTR9	ENST00000361367	human	ensembl	69_37n	1	known	missense	c.2311	p.D771N	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730	80	0	0	24	32	57.14	-	-	-	A	10792118	G	A	10792118	3	1	410	1	0	0	0	0	1	0	0	0	4056	942	33	2	2381	2	CTR9	11	10792118	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	3728259	10792118	124214398	104	40959										
OR5D14	0	genome.wustl.edu	37	chr11	55563515	55563515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgtttggccccttggtactcCtttgttatgctctccggtta	9	11	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	55563515	55563515	C	T	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	missense	c.484	p.L162F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	87	0	0	67	21	23.86	-	-	-	T	55563515	C	T	55563515	3	4	410	1	0	0	0	0	1	0	0	0	11228	681	24	4	486	4	OR5D14	11	55563515	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	44771397	55563515	79443001	105	40960										
MS4A7	0	genome.wustl.edu	37	chr11	60160252	60160252	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gaaacagctctactccaacaAccctggggtgagtatgctga	10	11	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	60160252	60160252	A	T	SNP	MS4A7	ENST00000300184	human	ensembl	69_37n	1	known	missense	c.641	p.N214I	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A7	HGNC	ENSG00000166927	89	0	0	87	20	18.52	-	-	-	T	60160252	A	T	60160252	3	4	410	1	0	0	0	0	1	0	0	0	9938	43	2	5	659	5	MS4A7	11	60160252	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	4596737	60160252	74846264	106	40961										
GANAB	0	genome.wustl.edu	37	chr11	62402465	62402465	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gttctcatcacgaccagagaCagaaagcctgggaaacatat	9	10	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	62402465	62402465	C	A	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.388	p.V130F	0.150	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	28	0	0	33	6	15.38	-	-	-	A	62402465	C	A	62402465	3	1	410	1	0	0	0	0	1	0	0	0	6283	478	17	4	2596	4	GANAB	11	62402465	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	2242213	62402465	72604051	107	40962										
CDC42BPG	0	genome.wustl.edu	37	chr11	64606639	64606639	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gccgtagtggcccttgccctCctccatggcctgcaggatct	11	16	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	64606639	64606639	C	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	nonsense	c.742	p.E248*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	25	0	0	14	17	54.84	-	-	-	A	64606639	C	A	64606639	4	1	410	1	0	0	0	0	0	1	0	0	3103	864	30	2	4037	2	CDC42BPG	11	64606639	Nonsense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	2204174	64606639	70399877	108	40963										
EFEMP2	0	genome.wustl.edu	37	chr11	65638053	65638053	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	taaccatcagggcaggtgcaCtgataggagccaggcaagtt	13	9	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	65638053	65638053	C	G	SNP	EFEMP2	ENST00000307998	human	ensembl	69_37n	-1	known	missense	c.444	p.Q148H	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,superfamily_TIL_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638	26	0	0	26	13	33.33	-	-	-	G	65638053	C	G	65638053	3	3	410	1	0	0	0	0	1	0	0	0	4977	564	20	4	915	4	EFEMP2	11	65638053	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	1031414	65638053	69368463	109	40964										
PC	0	genome.wustl.edu	37	chr11	66620009	66620009	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cacacgagtggccagcagtgActggtgggcgtccctgaagg	16	11	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	66620009	66620009	A	C	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.1726	p.S576A	1.000	pfam_PYR_CT,pirsf_Pyruv_COase,pfscan_PYR_CT,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	31	0	0	20	9	31.03	-	-	-	C	66620009	A	C	66620009	3	2	410	1	0	0	0	0	1	0	0	0	11570	275	10	5	1846	5	PC	11	66620009	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	981956	66620009	68386507	110	40965										
LRRC32	0	genome.wustl.edu	37	chr11	76370691	76370691	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	acttctgccggcggacgcagCagcaggcggccagcgtggtg	17	13	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	76370691	76370691	C	G	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	missense	c.1946	p.C649S	0.918	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	67	0	0	30	21	40.38	-	-	-	G	76370691	C	G	76370691	3	3	410	1	0	0	0	0	1	0	0	0	9053	710	25	4	46	4	LRRC32	11	76370691	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	9750682	76370691	58635825	111	40966										
ACAT1	0	genome.wustl.edu	37	chr11	108017053	108017053	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tccccaaaaagtgaatatcaAtggaggagctgtttctctgg	10	8	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	108017053	108017053	A	C	SNP	ACAT1	ENST00000265838	human	ensembl	69_37n	1	known	missense	c.1130	p.N377T	0.998	pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT1	HGNC	ENSG00000075239	87	0	0	28	11	28.21	-	-	-	C	108017053	A	C	108017053	3	2	410	1	0	0	0	0	1	0	0	0	121	101	4	5	1172	5	ACAT1	11	108017053	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	31646362	108017053	26989463	112	40967										
ACSM4	0	genome.wustl.edu	37	chr12	7473395	7473395	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atgctcgtgcaaaaagacctTaagaggtacttgggcagaaa	11	7	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	7473395	7473395	T	G	SNP	ACSM4	ENST00000399422	human	ensembl	69_37n	1	novel	silent	c.996	p.L332	0.983	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009	44	0	0	14	66	82.5	-	-	-	G	7473395	T	G	7473395	2	3	410	1	0	0	0	0	0	0	0	1	186	1741	61	5		5	ACSM4	12	7473395	Silent	SNP	T	TCGA-AR-A256-01A-11D-A167-09		7473395	126378500	113	40968										
ZNF705A	0	genome.wustl.edu	37	chr12	8328517	8328517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	catcctatcaccagaaaagaCgcatccaccagtatgacaat	5	13	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	8328517	8328517	C	A	SNP	ZNF705A	ENST00000359286	human	ensembl	69_37n	1	known	missense	c.297	p.D99E	0.028	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705A	HGNC	ENSG00000196946	176	0	0	111	40	26.49	-	-	-	A	8328517	C	A	8328517	3	1	410	1	0	0	0	0	1	0	0	0	18204	535	19	3	311	3	ZNF705A	12	8328517	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	855122	8328517	125523378	114	40969										
CMAS	0	genome.wustl.edu	37	chr12	22214246	22214246	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttggcaaagagaagcttaagGaaataaaacttttggtttgc	10	4	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	22214246	22214246	G	T	SNP	CMAS	ENST00000229329	human	ensembl	69_37n	1	known	nonsense	c.820	p.E274*	1.000	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726	63	0	0	47	24	33.33	-	-	-	T	22214246	G	T	22214246	4	4	410	1	0	0	0	0	0	1	0	0	3605	1175	41	2	842	2	CMAS	12	22214246	Nonsense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	13885729	22214246	111637649	115	40970										
CASC1	0	genome.wustl.edu	37	chr12	25311497	25311497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	catatttcaaacgggcttccTctaaagaaccaaaaataatt	4	9	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	25311497	25311497	T	C	SNP	CASC1	ENST00000395987	human	ensembl	69_37n	-1	known	missense	c.107	p.E36G	1.000	NULL	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307	109	0	0	90	11	10.89	-	-	-	C	25311497	T	C	25311497	3	2	410	1	0	0	0	0	1	0	0	0	2685	1565	54	5	2113	5	CASC1	12	25311497	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	3097251	25311497	108540398	116	40971										
ITPR2	0	genome.wustl.edu	37	chr12	26877590	26877590	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tttaagagaaaatacttactTgtataacattactgtatttt	4	4	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	26877590	26877590	T	A	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.365	p.Q122L	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	169	0	0	48	75	60.98	-	-	-	A	26877590	T	A	26877590	3	1	410	1	0	0	0	0	1	0	0	0	7975	1826	63	5	7956	5	ITPR2	12	26877590	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	1566093	26877590	106974305	117	40972										
BIN2	0	genome.wustl.edu	37	chr12	51685681	51685681	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtcctctggatagaggctctCttctttggttgttcagatcc	10	10	4	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	51685681	51685681	C	T	SNP	BIN2	ENST00000267012	human	ensembl	69_37n	-1	known	silent	c.1209	p.K403	0.002	NULL	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934	67	0	0	19	32	62.75	-	-	-	T	51685681	C	T	51685681	2	4	410	1	0	0	0	0	0	0	0	1	1438	912	32	2		2	BIN2	12	51685681	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	24808091	51685681	82166214	118	40973										
ESPL1	0	genome.wustl.edu	37	chr12	53676930	53676930	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	caggctggcagacacctgagAtagctctcatagactcccat	9	13	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	53676930	53676930	A	G	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.2809	p.I937V	0.998	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	64	0	0	12	36	75	-	-	-	G	53676930	A	G	53676930	3	3	410	1	0	0	0	0	1	0	0	0	5290	333	12	5	2863	5	ESPL1	12	53676930	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	1991249	53676930	80174965	119	40974										
OR6C3	0	genome.wustl.edu	37	chr12	55725942	55725942	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gctaagtgggtttctgaccaTtttcccaccccttatgcttc	7	13	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	55725942	55725942	T	A	SNP	OR6C3	ENST00000379667	human	ensembl	69_37n	1	known	missense	c.458	p.I153N	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329	88	0	0	45	21	31.82	-	-	-	A	55725942	T	A	55725942	3	1	410	1	0	0	0	0	1	0	0	0	11265	1493	52	5	460	5	OR6C3	12	55725942	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	2049012	55725942	78125953	120	40975										
NAV3	0	genome.wustl.edu	37	chr12	78591132	78591132	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ataatcttcatcatgtgggcTctctgagtgatatcttcaat	7	8	6	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	78591132	78591132	T	C	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.6397	p.S2133P	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	93	0	0	22	37	62.71	-	-	-	C	78591132	T	C	78591132	3	2	410	1	0	0	0	0	1	0	0	0	10257	1551	54	5	6465	5	NAV3	12	78591132	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	22865190	78591132	55260763	121	40976										
RIMBP2	0	genome.wustl.edu	37	chr12	130898669	130898669	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccgcaggcagccatcccgcaCcttgatgatctggccttctt	9	16	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	130898669	130898669	C	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	splice_site	c.2652+1	e12+1	1.000	-	-	-	no_errors	RIMBP2	HGNC	ENSG00000060709	20	0	0	24	32	57.14	-	-	-	A	130898669	C	A	130898669	5	1	410	1	0	0	0	0	0	0	1	0	13447	521	18	4	529	4	RIMBP2	12	130898669	Splice_Site	SNP	C	TCGA-AR-A256-01A-11D-A167-09	52307537	130898669	2953226	122	40977										
P2RX2	0	genome.wustl.edu	37	chr12	133198288	133198288	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagaaatttgacaaggtgtgTacgccgagccacccctcagg	11	11	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	133198288	133198288	T	G	SNP	P2RX2	ENST00000343948	human	ensembl	69_37n	1	known	missense	c.1224	p.C408W	0.672	NULL	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	31	0	0	28	5	15.15	-	-	-	G	133198288	T	G	133198288	3	3	410	1	0	0	0	0	1	0	0	0	11413	1644	57	5	1262	5	P2RX2	12	133198288	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	2299619	133198288	653607	123	40978										
RXFP2	0	genome.wustl.edu	37	chr13	32340136	32340136	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	acagtcttccagataaagttTtcatcaaatacacaaaactt	3	9	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	13	32340136	32340136	T	G	SNP	RXFP2	ENST00000298386	human	ensembl	69_37n	1	known	missense	c.469	p.F157V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP2	HGNC	ENSG00000133105	48	0	0	19	20	51.28	-	-	-	G	32340136	T	G	32340136	3	3	410	1	0	0	0	0	1	0	0	0	13846	1841	64	5	487	5	RXFP2	13	32340136	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09		32340136	82829742	124	40979										
PHF11	0	genome.wustl.edu	37	chr13	50098309	50098309	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gaaatattagacaaagttcaTtcaattccagaaaaactcat	4	7	3	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	13	50098309	50098309	T	G	SNP	PHF11	ENST00000378319	human	ensembl	69_37n	1	known	missense	c.726	p.H242Q	0.059	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147	34	0	0	17	15	46.88	-	-	-	G	50098309	T	G	50098309	3	3	410	1	0	0	0	0	1	0	0	0	11896	1490	52	5	756	5	PHF11	13	50098309	Missense_Mutation	SNP	T	TCGA-AR-A256-01A-11D-A167-09	17758173	50098309	65071569	125	40980										
SYNE2	0	genome.wustl.edu	37	chr14	64608066	64608066	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aactctcctttaggagttttCaaaagaagttgatgaaaaat	7	5	2	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	64608066	64608066	C	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	nonsense	c.14984	p.S4995*	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	35	0	0	18	20	52.63	-	-	-	G	64608066	C	G	64608066	4	3	410	1	0	0	0	0	0	1	0	0	15538	838	29	2	15302	2	SYNE2	14	64608066	Nonsense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09		64608066	42741474	126	40981										
VTI1B	0	genome.wustl.edu	37	chr14	68126640	68126640	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcctcctccatctctgccagCtgggaaggcagaaagtagtg	11	12	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	68126640	68126640	C	G	SNP	VTI1B	ENST00000554659	human	ensembl	69_37n	-1	known	splice_site	c.175-1	e3-1	1.000	-	-	-	no_errors	VTI1B	HGNC	ENSG00000100568	41	0	0	26	14	35	-	-	-	G	68126640	C	G	68126640	5	3	410	1	0	0	0	0	0	0	1	0	17333	811	28	4	540	4	VTI1B	14	68126640	Splice_Site	SNP	C	TCGA-AR-A256-01A-11D-A167-09	3518574	68126640	39222900	127	40982										
RIN3	0	genome.wustl.edu	37	chr14	93022208	93022208	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	accgccggggcatcagcatcCtggagaagctcatcaaaaca	10	13	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	93022208	93022208	C	G	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	missense	c.157	p.L53V	1.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	48	0	0	13	17	56.67	-	-	-	G	93022208	C	G	93022208	3	3	410	1	0	0	0	0	1	0	0	0	13459	680	24	4	163	4	RIN3	14	93022208	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	24895568	93022208	14327332	128	40983										
RTL1	0	genome.wustl.edu	37	chr14	101350433	101350433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	actctcagacggtcgttataGaacattcttgggtagctctg	10	9	3	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	101350433	101350433	G	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	silent	c.693	p.F231	0.192	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	46	0	0	34	14	29.17	-	-	-	A	101350433	G	A	101350433	2	1	410	1	0	0	0	0	0	0	0	1	13810	933	33	2		2	RTL1	14	101350433	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	8328225	101350433	5999107	129	40984										
AHNAK2	0	genome.wustl.edu	37	chr14	105412163	105412163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtggccctctgggagcttcaCgtccacctggccagcctgga	13	15	2	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	105412163	105412163	C	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.9625	p.V3209L	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	41	0	0	4	3	42.86	-	-	-	G	105412163	C	G	105412163	3	3	410	1	0	0	0	0	1	0	0	0	415	536	19	3	7766	3	AHNAK2	14	105412163	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	4061730	105412163	1937377	130	40985										
THBS1	0	genome.wustl.edu	37	chr15	39884927	39884927	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggagatgcctgtgaccacgaTgatgacaacgatggcattcc	12	10	0	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	39884927	39884927	T	C	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	silent	c.2691	p.D897	0.981	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	55	0	0	18	23	56.1	-	-	-	C	39884927	T	C	39884927	2	2	410	1	0	0	0	0	0	0	0	1	15948	1461	51	5		5	THBS1	15	39884927	Silent	SNP	T	TCGA-AR-A256-01A-11D-A167-09		39884927	62646465	131	40986										
C15orf23	0	genome.wustl.edu	37	chr15	40675104	40675104	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	atggctgtctacagagtgcgAttcccacccacttccgccta	8	15	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	40675104	40675104	A	T	SNP	C15orf23	ENST00000249776	human	ensembl	69_37n	1	known	missense	c.68	p.D23V	0.000	NULL	NULL	-	no_errors	C15orf23	HGNC	ENSG00000128944	21	0	0	15	6	28.57	-	-	-	T	40675104	A	T	40675104	3	4	410	1	0	0	0	0	1	0	0	0	1797	333	12	5	70	5	C15orf23	15	40675104	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	790177	40675104	61856288	132	40987										
AP4E1	0	genome.wustl.edu	37	chr15	51233946	51233946	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	caataattgaatgtttagatCatcctgatcccattattaaa	4	7	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	51233946	51233946	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	missense	c.1150	p.H384Y	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	94	0	0	18	36	66.67	-	-	-	T	51233946	C	T	51233946	3	4	410	1	0	0	0	0	1	0	0	0	753	826	29	2	1188	2	AP4E1	15	51233946	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	10558842	51233946	51297446	133	40988										
DNAJA4	0	genome.wustl.edu	37	chr15	78566657	78566657	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagatccagaccgtgtgcatCgagtgcaagggccagggtga	15	10	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	78566657	78566657	C	T	SNP	DNAJA4	ENST00000394855	human	ensembl	69_37n	1	known	silent	c.624	p.I208	0.000	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA4	HGNC	ENSG00000140403	26	0	0	7	19	73.08	-	-	-	T	78566657	C	T	78566657	2	4	410	1	0	0	0	0	0	0	0	1	4649	874	31	1		1	DNAJA4	15	78566657	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	27332711	78566657	23964735	134	40989										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84568455	84568455	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aacaagcacaagaactagaaGagaccagaatagcaacagaa	8	8	0	5			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	84568455	84568455	G	C	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.1672	p.E558Q	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	55	0	0	12	35	74.47	-	-	-	C	84568455	G	C	84568455	3	2	410	1	0	0	0	0	1	0	0	0	276	943	33	2	1726	2	ADAMTSL3	15	84568455	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	6001798	84568455	17962937	135	40990										
UNC45A	0	genome.wustl.edu	37	chr15	91493734	91493734	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggggtgcacattgcagatctAtgaggtggtccggcccctcg	15	11	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	91493734	91493734	A	G	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	1	known	missense	c.2192	p.Y731C	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	26	0	0	5	22	81.48	-	-	-	G	91493734	A	G	91493734	3	3	410	1	0	0	0	0	1	0	0	0	17085	449	16	5	2258	5	UNC45A	15	91493734	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	6925279	91493734	11037658	136	40991										
LRRK1	0	genome.wustl.edu	37	chr15	101555536	101555536	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttttcctccccccagaaatgAagatggactgaaaacgaagc	8	11	0	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	101555536	101555536	A	G	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.1538	p.E513G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	57	0	0	41	11	21.15	-	-	-	G	101555536	A	G	101555536	3	3	410	1	0	0	0	0	1	0	0	0	9098	246	9	5	1580	5	LRRK1	15	101555536	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	10061802	101555536	975856	137	40992										
PDXDC1	0	genome.wustl.edu	37	chr16	15103550	15103550	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggttccaggatgttgccttcCtggagaaactgattaaagat	11	7	0	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	15103550	15103550	C	T	SNP	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	silent	c.661	p.L221	0.998	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	116	0	0	134	16	10.67	-	-	-	T	15103550	C	T	15103550	2	4	410	1	0	0	0	0	0	0	0	1	11769	680	24	4		4	PDXDC1	16	15103550	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09		15103550	75251203	138	40993										
SMG1	0	genome.wustl.edu	37	chr16	18841257	18841257	+	Frame_Shift_Del	DEL	T	T	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tagaatattacctgacaatgTtttagaaaaggtaccacaga							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	18841257	18841257	T	-	DEL	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	frame_shift_del	c.9124	p.T3042fs	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	36	0	0	17	13	43.33	-	-	-	-	18841257	T	-	18841257	7	5	410	1	0	1	0	1	0	0	0	0	14884	1725	60	0	1905	0	SMG1	16	18841257	Frame_Shift_Del	DEL	T	TCGA-AR-A256-01A-11D-A167-09	3737707	18841257	71513496	139	40994										
IL27	0	genome.wustl.edu	37	chr16	28515309	28515309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagctggggcctccctggggGccttgggaatccccagacac	14	15	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	28515309	28515309	G	T	SNP	IL27	ENST00000356897	human	ensembl	69_37n	-1	known	missense	c.94	p.P32T	0.664	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	IL27	HGNC	ENSG00000197272	24	0	0	10	11	52.38	-	-	-	T	28515309	G	T	28515309	3	4	410	1	0	0	0	0	1	0	0	0	7734	1203	42	4	653	4	IL27	16	28515309	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	9674052	28515309	61839444	140	40995										
ABCC11	0	genome.wustl.edu	37	chr16	48245083	48245083	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttgtaatgtctggacatagaAaacagggctctcctggagga	12	7	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	48245083	48245083	A	T	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.1384	p.F462I	0.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	40	0	0	16	16	50	-	-	-	T	48245083	A	T	48245083	3	4	410	1	0	0	0	0	1	0	0	0	51	14	1	5	2844	5	ABCC11	16	48245083	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	19729774	48245083	42109670	141	40996										
CCDC135	0	genome.wustl.edu	37	chr16	57741527	57741527	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gatgagcacttcctgggcatCgaaagcctgtggaaccacaa	11	11	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	57741527	57741527	C	G	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1014	p.I338M	0.008	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	34	0	0	24	12	33.33	-	-	-	G	57741527	C	G	57741527	3	3	410	1	0	0	0	0	1	0	0	0	2794	874	31	3	1036	3	CCDC135	16	57741527	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	9496444	57741527	32613226	142	40997										
FAM65A	0	genome.wustl.edu	37	chr16	67580080	67580080	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agcccctggtgtacctctgcCaaactgacacagaagctgtg	10	13	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	67580080	67580080	C	T	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	nonsense	c.3568	p.Q1190*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	29	0	0	14	5	26.32	-	-	-	T	67580080	C	T	67580080	4	4	410	1	0	0	0	0	0	1	0	0	5644	595	21	4	3586	4	FAM65A	16	67580080	Nonsense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	9838553	67580080	22774673	143	40998										
TP53	0	genome.wustl.edu	37	chr17	7579359	7579360	+	Frame_Shift_Ins	INS	-	-	GA													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gaatgcaagaagcccagacgINSgaaaccgtagctgccctggt							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	7579359	7579360	-	GA	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.328_327	p.R109fs	0.028:0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	23	0	0	14	22	61.11	-	-	-	GA	7579360	-	GA	7579359	7	5	410	1	0	1	1	0	0	0	0	0	16477	1116	39	0	974	0	TP53	17	7579359	Frame_Shift_Ins	INS	-	TCGA-AR-A256-01A-11D-A167-09		7579359	73615851	144	40999										
WRAP53	0	genome.wustl.edu	37	chr17	7592245	7592245	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agtgagttgagtcctcgaatCgaggagcaagaactttctga	12	7	1	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	7592245	7592245	C	T	SNP	WRAP53	ENST00000316024	human	ensembl	69_37n	1	known	silent	c.279	p.I93	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	27	0	0	33	7	17.5	-	-	-	T	7592245	C	T	7592245	2	4	410	1	0	0	0	0	0	0	0	1	17497	874	31	1		1	WRAP53	17	7592245	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	12886	7592245	73602965	145	41000										
MYH10	0	genome.wustl.edu	37	chr17	8390870	8390870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgaagctacagcaagcgcccGctgtttcctctcatcctcca	7	16	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	8390870	8390870	G	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.4897	p.R1633W	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	74	0	0	44	20	31.25	-	-	-	A	8390870	G	A	8390870	3	1	410	1	0	0	0	0	1	0	0	0	10102	1086	38	1	1128	1	MYH10	17	8390870	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	798625	8390870	72804340	146	41001										
PSME3	0	genome.wustl.edu	37	chr17	40993571	40993571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aagatcaaacggccccggagCagcaatgcagagactctgta	11	11	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	40993571	40993571	C	T	SNP	PSME3	ENST00000293362	human	ensembl	69_37n	1	known	silent	c.780	p.S260	1.000	pfam_Proteasome_activ_REG_bsu,superfamily_Proteasome_activ_REG_asu/bsu	pfam_Proteasome_activ_REG_bsu,pfam_Proteasome_activ_REG_asu,superfamily_Proteasome_activ_REG_asu/bsu	-	no_errors	PSME3	HGNC	ENSG00000131467	32	0	0	27	27	50	-	-	-	T	40993571	C	T	40993571	2	4	410	1	0	0	0	0	0	0	0	1	12788	709	25	4		4	PSME3	17	40993571	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	32602701	40993571	40201639	147	41002										
WFIKKN2	0	genome.wustl.edu	37	chr17	48917309	48917309	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aacaaccctgtgcaccagtcGgtcaccatgggtgagacagt	11	12	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	48917309	48917309	G	A	SNP	WFIKKN2	ENST00000311378	human	ensembl	69_37n	1	known	silent	c.660	p.S220	0.003	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714	37	0	0	71	23	24.47	-	-	-	A	48917309	G	A	48917309	2	1	410	1	0	0	0	0	0	0	0	1	17456	1103	39	1		1	WFIKKN2	17	48917309	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	7923738	48917309	32277901	148	41003										
LRRC37A3	0	genome.wustl.edu	37	chr17	62865212	62865212	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgagagtactatagtacttaCagatattttaatgctggcaa	8	5	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	62865212	62865212	C	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	splice_site	c.2978+1	e6+1	1.000	-	-	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	15	0	0	1	14	93.33	-	-	-	T	62865212	C	T	62865212	5	4	410	1	0	0	0	0	0	0	1	0	9059	492	17	4	1953	4	LRRC37A3	17	62865212	Splice_Site	SNP	C	TCGA-AR-A256-01A-11D-A167-09	13947903	62865212	18329998	149	41004										
ABCA6	0	genome.wustl.edu	37	chr17	67080498	67080498	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggctcagcacaaaacacaacTgcaatgtagaaaaacacccc	6	13	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	67080498	67080498	T	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	splice_site	c.4261-2	e33-2	1.000	-	-	-	no_errors	ABCA6	HGNC	ENSG00000154262	77	0	0	70	25	26.32	-	-	-	C	67080498	T	C	67080498	5	2	410	1	0	0	0	0	0	0	1	0	36	1594	55	5	618	5	ABCA6	17	67080498	Splice_Site	SNP	T	TCGA-AR-A256-01A-11D-A167-09	4215286	67080498	14114712	150	41005										
GPR142	0	genome.wustl.edu	37	chr17	72368470	72368470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccctcctgtgggcgccccggGtcttcgtcatgctctaccac	10	18	3	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	72368470	72368470	G	T	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	missense	c.1120	p.V374F	0.068	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	31	0	0	41	7	14.58	-	-	-	T	72368470	G	T	72368470	3	4	410	1	0	0	0	0	1	0	0	0	6700	1261	44	4	1134	4	GPR142	17	72368470	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	5287972	72368470	8826740	151	41006										
FASN	0	genome.wustl.edu	37	chr17	80041432	80041432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aaggtcgaatttgccaatttCcaggaagcgaccgtgcgtag	12	9	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	80041432	80041432	C	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.5302	p.E1768K	1.000	pfam_ADH_C,smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	17	0	0	33	25	43.1	-	-	-	T	80041432	C	T	80041432	3	4	410	1	0	0	0	0	1	0	0	0	5729	864	30	2	2285	2	FASN	17	80041432	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	7672962	80041432	1153778	152	41007										
ABCA7	0	genome.wustl.edu	37	chr19	1061826	1061827	+	Frame_Shift_Del	DEL	TT	TT	-													0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gagcagggaagacgtccacgTttcgcatggtgacgggggac							TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	1061826	1061827	TT	-	DEL	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	frame_shift_del	c.5509_5510	p.F1837fs	0.995:1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	46	0	0	43	6	12	-	-	-	-	1061827	TT	-	1061826	7	5	410	1	0	1	0	1	0	0	0	0	37	1725	60	0	5667	0	ABCA7	19	1061826	Frame_Shift_Del	DEL	TT	TCGA-AR-A256-01A-11D-A167-09		1061826	58067157	153	41008										
PLIN4	0	genome.wustl.edu	37	chr19	4510826	4510826	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	accagttctggaaggtgctgAggccagtgtgggtggcccct	16	10	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	4510826	4510826	A	T	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.3104	p.L1035H	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	57	0	0	6	28	80	-	-	-	T	4510826	A	T	4510826	3	4	410	1	0	0	0	0	1	0	0	0	12166	304	11	5	985	5	PLIN4	19	4510826	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	3449000	4510826	54618157	154	41009										
MUC16	0	genome.wustl.edu	37	chr19	8974096	8974096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ggattgataaattctggggtGcatagcctggagccacagag	14	7	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	8974096	8974096	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.42575	p.A14192E	0.006	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	78	0	0	93	18	16.22	-	-	-	T	8974096	G	T	8974096	3	4	410	1	0	0	0	0	1	0	0	0	10045	1319	46	4	984	4	MUC16	19	8974096	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	4463270	8974096	50154887	155	41010										
MUC16	0	genome.wustl.edu	37	chr19	9004897	9004897	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccagggagggatgatggagtCtcagaggtttccggctgtac	16	8	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	9004897	9004897	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.39921	p.E13307	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	62	0	0	80	25	23.81	-	-	-	T	9004897	C	T	9004897	2	4	410	1	0	0	0	0	0	0	0	1	10045	912	32	2		2	MUC16	19	9004897	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	30801	9004897	50124086	156	41011										
MAN2B1	0	genome.wustl.edu	37	chr19	12760800	12760800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctccagcggtgtgtcaaaacGgctgatgacctccttccccc	9	16	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	12760800	12760800	G	T	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	missense	c.2194	p.R732S	0.997	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	55	0	0	51	35	40.7	-	-	-	T	12760800	G	T	12760800	3	4	410	1	0	0	0	0	1	0	0	0	9287	1116	39	3	869	3	MAN2B1	19	12760800	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	3755903	12760800	46368183	157	41012										
RAD23A	0	genome.wustl.edu	37	chr19	13059325	13059325	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttgcagctctgttccctcttCaggtagcagcgggcgagagg	14	11	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	13059325	13059325	C	G	SNP	RAD23A	ENST00000586534	human	ensembl	69_37n	1	known	nonsense	c.431	p.S144*	1.000	tigrfam_Rad23	pfam_XPC-bd,pfam_UBA/transl_elong_EF1B_N,pfam_Ubiquitin,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,prints_Rad23,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	-	no_errors	RAD23A	HGNC	ENSG00000179262	49	0	0	33	30	47.62	-	-	-	G	13059325	C	G	13059325	4	3	410	1	0	0	0	0	0	1	0	0	13065	838	29	2	445	2	RAD23A	19	13059325	Nonsense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	298525	13059325	46069658	158	41013										
SIN3B	0	genome.wustl.edu	37	chr19	16964996	16964996	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggaggtgtatgaaaacttcCtccgctgcatcgcactcttc	9	12	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	16964996	16964996	C	G	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	missense	c.982	p.L328V	1.000	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	33	0	0	34	23	40.35	-	-	-	G	16964996	C	G	16964996	3	3	410	1	0	0	0	0	1	0	0	0	14415	681	24	4	1012	4	SIN3B	19	16964996	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	3905671	16964996	42163987	159	41014										
IFI30	0	genome.wustl.edu	37	chr19	18286477	18286477	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	accattgtctgcatggaagaGtttgaggacatggagagaag	14	5	1	3			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	18286477	18286477	G	C	SNP	IFI30	ENST00000407280	human	ensembl	69_37n	1	known	missense	c.453	p.E151D	0.002	pfam_Interferon-induced_GILT	pfam_Interferon-induced_GILT	-	no_errors	IFI30	HGNC	ENSG00000216490	24	0	0	21	15	40.54	-	-	-	C	18286477	G	C	18286477	3	2	410	1	0	0	0	0	1	0	0	0	7569	1020	36	4	467	4	IFI30	19	18286477	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	1321481	18286477	40842506	160	41015										
LSR	0	genome.wustl.edu	37	chr19	35758116	35758116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggagtggggtggccactccCcccggagtcccaggggatgg	18	12	0	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	35758116	35758116	C	G	SNP	LSR	ENST00000361790	human	ensembl	69_37n	1	known	missense	c.1393	p.P465A	0.163	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	13	0	0	10	11	52.38	-	-	-	G	35758116	C	G	35758116	3	3	410	1	0	0	0	0	1	0	0	0	9130	623	22	4	1427	4	LSR	19	35758116	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	17471639	35758116	23370867	161	41016										
CEACAM5	0	genome.wustl.edu	37	chr19	42221424	42221424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	acaactccaaccccgtggagGatgaggatgctgtagcctta	11	11	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	42221424	42221424	G	A	SNP	CEACAM5	ENST00000221992	human	ensembl	69_37n	1	known	missense	c.1009	p.D337N	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM5	HGNC	ENSG00000105388	81	0	0	76	51	40.16	-	-	-	A	42221424	G	A	42221424	3	1	410	1	0	0	0	0	1	0	0	0	3224	1174	41	2	1027	2	CEACAM5	19	42221424	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	6463308	42221424	16907559	162	41017										
TMEM145	0	genome.wustl.edu	37	chr19	42821924	42821924	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ccggctacgggctcattggaCtgcaggtggcggcctacgtg	16	12	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	42821924	42821924	C	G	SNP	TMEM145	ENST00000301204	human	ensembl	69_37n	1	known	missense	c.964	p.L322V	1.000	pfam_Rhodopsin-like_GPCR_TM_domain	pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	TMEM145	HGNC	ENSG00000167619	67	0	0	68	50	42.37	-	-	-	G	42821924	C	G	42821924	3	3	410	1	0	0	0	0	1	0	0	0	16154	564	20	4	1010	4	TMEM145	19	42821924	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	600500	42821924	16307059	163	41018										
LILRA2	0	genome.wustl.edu	37	chr19	55087518	55087518	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tacagatgctacagctcactCagctccaacccctacctgct	5	17	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	55087518	55087518	C	T	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	silent	c.1197	p.L399	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	50	0	0	28	30	51.72	-	-	-	T	55087518	C	T	55087518	2	4	410	1	0	0	0	0	0	0	0	1	8840	813	29	2		2	LILRA2	19	55087518	Silent	SNP	C	TCGA-AR-A256-01A-11D-A167-09	12265594	55087518	4041465	164	41019										
NLRP13	0	genome.wustl.edu	37	chr19	56423120	56423120	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tgtgactgctaacagaaagcCttagcttatttaacctttta	6	8	0	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	56423120	56423120	C	G	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	missense	c.2063	p.R688T	0.615	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	34	0	0	10	12	54.55	-	-	-	G	56423120	C	G	56423120	3	3	410	1	0	0	0	0	1	0	0	0	10547	681	24	4	1094	4	NLRP13	19	56423120	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	1335602	56423120	2705863	165	41020										
TBC1D20	0	genome.wustl.edu	37	chr20	420924	420924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtaaatcggcatcagtgggtGgcaggccaggaagaagtcat	15	7	2	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	420924	420924	G	T	SNP	TBC1D20	ENST00000354200	human	ensembl	69_37n	-1	known	missense	c.736	p.H246N	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D20	HGNC	ENSG00000125875	40	0	0	40	7	14.89	-	-	-	T	420924	G	T	420924	3	4	410	1	0	0	0	0	1	0	0	0	15701	1348	47	4	487	4	TBC1D20	20	420924	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09		420924	62604596	166	41021										
SDCBP2	0	genome.wustl.edu	37	chr20	1299057	1299057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cagttctgccaagtttgggtAcaaaactgatagggaaagaa	11	6	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	1299057	1299057	A	G	SNP	SDCBP2	ENST00000339987	human	ensembl	69_37n	-1	known	missense	c.130	p.Y44H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775	38	0	0	43	10	18.87	-	-	-	G	1299057	A	G	1299057	3	3	410	1	0	0	0	0	1	0	0	0	14044	391	14	5	772	5	SDCBP2	20	1299057	Missense_Mutation	SNP	A	TCGA-AR-A256-01A-11D-A167-09	878133	1299057	61726463	167	41022										
ADAM33	0	genome.wustl.edu	37	chr20	3655440	3655440	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ctcatcccagagcaggtgcaGaggactacccaggagtcggg	14	12	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	3655440	3655440	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	31	0	0	58	10	14.71	-	-	-	C	3655440	G	C	3655440	2	2	410	1	0	0	0	0	0	0	0	1	250	929	33	2		2	ADAM33	20	3655440	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09	2356383	3655440	59370080	168	41023										
TGM2	0	genome.wustl.edu	37	chr20	36759526	36759526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	cttctgctcctcagtcaggcCggccccctccacagtgaagg	10	17	3	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	36759526	36759526	C	A	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	missense	c.1882	p.G628C	0.997	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	40	0	0	40	11	21.57	-	-	-	A	36759526	C	A	36759526	3	1	410	1	0	0	0	0	1	0	0	0	15925	652	23	3	189	3	TGM2	20	36759526	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	33104086	36759526	26265994	169	41024										
FAM65C	0	genome.wustl.edu	37	chr20	49208921	49208921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	tcctgactgcaccagccaggCgagcgctggccgccctgcac	12	18	0	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	49208921	49208921	C	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.2537	p.R846P	0.440	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	14	0	0	18	6	25	-	-	-	G	49208921	C	G	49208921	3	3	410	1	0	0	0	0	1	0	0	0	5646	768	27	3	331	3	FAM65C	20	49208921	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	12449395	49208921	13816599	170	41025										
FAM65C	0	genome.wustl.edu	37	chr20	49236530	49236530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	agcccagccttacttgaggcCtcttttcaatgcttcgaaga	8	12	2	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	49236530	49236530	C	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.262	p.G88R	1.000	superfamily_Chemokine_IL8-like_dom	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	36	0	0	29	28	48.28	-	-	-	G	49236530	C	G	49236530	3	3	410	1	0	0	0	0	1	0	0	0	5646	681	24	4	2670	4	FAM65C	20	49236530	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	27609	49236530	13788990	171	41026										
PHACTR3	0	genome.wustl.edu	37	chr20	58349443	58349443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	acaagcgaactgccgctaagGaatctgaggagaacaaggag	13	8	1	2			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	58349443	58349443	G	C	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	missense	c.1072	p.E358Q	0.989	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	58	0	0	76	29	27.62	-	-	-	C	58349443	G	C	58349443	3	2	410	1	0	0	0	0	1	0	0	0	11885	1175	41	2	1098	2	PHACTR3	20	58349443	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	9112913	58349443	4676077	172	41027										
ZNF280B	0	genome.wustl.edu	37	chr22	22842463	22842463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	ttcatggcacgttctaaaatGtgtttctacatcagcaaaga	7	8	4	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	22842463	22842463	G	A	SNP	ZNF280B	ENST00000360412	human	ensembl	69_37n	-1	known	missense	c.1261	p.H421Y	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477	69	0	0	26	22	45.83	-	-	-	A	22842463	G	A	22842463	3	1	410	1	0	0	0	0	1	0	0	0	17911	1377	48	4	374	4	ZNF280B	22	22842463	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09		22842463	28462103	173	41028										
MICALL1	0	genome.wustl.edu	37	chr22	38308003	38308003	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	caatgtcttcgagaataaccGtttggtaagttcccggacag	10	9	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	38308003	38308003	G	C	SNP	MICALL1	ENST00000215957	human	ensembl	69_37n	1	known	missense	c.191	p.R64P	0.984	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	89	0	0	56	13	18.84	-	-	-	C	38308003	G	C	38308003	3	2	410	1	0	0	0	0	1	0	0	0	9644	1145	40	3	197	3	MICALL1	22	38308003	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	15465540	38308003	12996563	174	41029										
SERHL2	0	genome.wustl.edu	37	chr22	42962330	42962330	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gtctggttctgaacagagacCagaggctcgcctgggtgagt	15	9	2	4			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	42962330	42962330	C	A	SNP	SERHL2	ENST00000327678	human	ensembl	69_37n	1	known	missense	c.634	p.Q212K	0.761	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	SERHL2	HGNC	ENSG00000183569	39	0	0	9	21	70	-	-	-	A	42962330	C	A	42962330	3	1	410	1	0	0	0	0	1	0	0	0	14166	595	21	4	668	4	SERHL2	22	42962330	Missense_Mutation	SNP	C	TCGA-AR-A256-01A-11D-A167-09	4654327	42962330	8342236	175	41030										
IDS	0	genome.wustl.edu	37	chrX	148568514	148568514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	aggtaagggaaaagcttctcGcctgcctccggaagtgaagc	13	10	1	1			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	X	148568514	148568514	G	A	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.1122	p.G374	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	31	0	0	8	19	70.37	-	-	-	A	148568514	G	A	148568514	2	1	410	1	0	0	0	0	0	0	0	1	7557	1074	38	1		1	IDS	23	148568514	Silent	SNP	G	TCGA-AR-A256-01A-11D-A167-09		148568514	6702046	176	41031										
HCFC1	0	genome.wustl.edu	37	chrX	153225483	153225483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	24	0.017307267055687	1.7831752055661	1.72745098039216	1.8252312245653	0.424182924604522	1	11	gggaggtggcagtagcagccGtggcaggaatgtcatatttc	16	7	1	0			TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	X	153225483	153225483	G	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1214	p.T405K	1.000	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	73	0	0	15	29	65.91	-	-	-	T	153225483	G	T	153225483	3	4	410	1	0	0	0	0	1	0	0	0	7042	1145	40	3	4969	3	HCFC1	23	153225483	Missense_Mutation	SNP	G	TCGA-AR-A256-01A-11D-A167-09	4656969	153225483	2045077	177	41032										
PLEKHN1	0	genome.wustl.edu	37	chr1	901936	901936	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggaacagccactgtgtccctCaggcccccaggaggctccgg	13	16	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	901936	901936	C	T	SNP	PLEKHN1	ENST00000379409	human	ensembl	69_37n	1	known	nonsense	c.25	p.Q9*	0.990	NULL	smart_Pleckstrin_homology	-	no_errors	PLEKHN1	HGNC	ENSG00000187583	25	0	0	14	20	58.82	-	-	-	T	901936	C	T	901936	4	4	411	1	0	0	0	0	0	1	0	0	12157	827	29	2	27	2	PLEKHN1	1	901936	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		901936	248348685	1	41033										
PRAMEF7	0	genome.wustl.edu	37	chr1	12979942	12979942	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgagccgctgctcccagctCagcaccttcagcttctgtgg	10	16	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	12979942	12979942	C	T	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1134	p.L378	0.455	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	94	0	0	52	7	11.86	-	-	-	T	12979942	C	T	12979942	2	4	411	1	0	0	0	0	0	0	0	1	12519	813	29	2		2	PRAMEF7	1	12979942	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	12078006	12979942	236270679	2	41034										
SPEN	0	genome.wustl.edu	37	chr1	16202794	16202794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggacaagacattacgatcagGattactatagagatcctcga	9	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	16202794	16202794	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.502	p.D168N	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	52	0	0	40	28	41.18	-	-	-	A	16202794	G	A	16202794	3	1	411	1	0	0	0	0	1	0	0	0	15129	1174	41	2	512	2	SPEN	1	16202794	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	3222852	16202794	233047827	3	41035										
NBPF1	0	genome.wustl.edu	37	chr1	16901178	16901178	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	acttccttttcttcagccttCggcatctccctgatgagcca	6	15	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	16901178	16901178	C	T	SNP	NBPF1	ENST00000287968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	357	0	0	384	64	14.29	-	-	-	T	16901178	C	T	16901178	1	4	411	0	1	0	0	0	0	0	0	0	10264	871	31	1		1	NBPF1	1	16901178	RNA	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	698384	16901178	232349443	4	41036										
SDHB	0	genome.wustl.edu	37	chr1	17350557	17350557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcaggcacagagaatgcactCgtagagcccgtcctgtatgg	13	11	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	17350557	17350557	C	T	SNP	SDHB	ENST00000375499	human	ensembl	69_37n	-1	known	missense	c.553	p.E185K	1.000	superfamily_Helical_ferredxn,tigrfam_Succ_DH/fum_Rdtase_Fe-S	superfamily_Helical_ferredxn,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	-	no_errors	SDHB	HGNC	ENSG00000117118	33	0	0	25	14	35.9	-	-	-	T	17350557	C	T	17350557	3	4	411	1	0	0	0	0	1	0	0	0	14053	893	31	1	301	1	SDHB	1	17350557	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	449379	17350557	231900064	5	41037										
ARID1A	0	genome.wustl.edu	37	chr1	27087558	27087558	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtgttgctcagtctcgctCaggaccactctcgcctgctg	10	15	4	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	27087558	27087558	C	G	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.2132	p.S711*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	54	0	0	40	27	40.3	-	-	-	G	27087558	C	G	27087558	4	3	411	1	0	0	0	0	0	1	0	0	915	838	29	2	2150	2	ARID1A	1	27087558	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	9737001	27087558	222163063	6	41038										
SNIP1	0	genome.wustl.edu	37	chr1	38018288	38018288	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggtgaggacttcggtttctCttactgcgaggagacttgct	13	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	38018288	38018288	C	T	SNP	SNIP1	ENST00000296215	human	ensembl	69_37n	-1	known	silent	c.285	p.K95	0.996	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SNIP1	HGNC	ENSG00000163877	154	0	0	120	78	39.39	-	-	-	T	38018288	C	T	38018288	2	4	411	1	0	0	0	0	0	0	0	1	14937	912	32	2		2	SNIP1	1	38018288	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10930730	38018288	211232333	7	41039										
MTF1	0	genome.wustl.edu	37	chr1	38281010	38281010	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggagggcaaggtagaggatGatgacccgggaacaggggct	19	6	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	38281010	38281010	G	A	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.2060	p.S687L	0.210	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	62	0	0	68	32	31.68	-	-	-	A	38281010	G	A	38281010	3	1	411	1	0	0	0	0	1	0	0	0	9994	1294	45	2	205	2	MTF1	1	38281010	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	262722	38281010	210969611	8	41040										
KIF2C	0	genome.wustl.edu	37	chr1	45205697	45205697	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaggagcggggtccctaggtCaaggggactcgtgagcggtg	20	8	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	45205697	45205697	C	A	SNP	KIF2C	ENST00000455186	human	ensembl	69_37n	1	known	nonsense	c.26	p.S9*	0.001	NULL	NULL	-	no_stop_codon	KIF2C	HGNC	ENSG00000142945	60	0	0	36	24	40	-	-	-	A	45205697	C	A	45205697	4	1	411	1	0	0	0	0	0	1	0	0	8351	841	29	2		2	KIF2C	1	45205697	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6924687	45205697	204044924	9	41041										
DAB1	0	genome.wustl.edu	37	chr1	57480804	57480804	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcttgtcggtctgtggacttGacctggtggagtcactcgtg	15	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	57480804	57480804	G	C	SNP	DAB1	ENST00000371231	human	ensembl	69_37n	-1	known	nonsense	c.1295	p.S432*	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB1	HGNC	ENSG00000173406	68	0	0	52	38	41.3	-	-	-	C	57480804	G	C	57480804	4	2	411	1	0	0	0	0	0	1	0	0	4249	1294	45	2	483	2	DAB1	1	57480804	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	12275107	57480804	191769817	10	41042										
EPHX4	0	genome.wustl.edu	37	chr1	92495765	92495765	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcaaacttttgtggagcctCggcaaggggccggcgcagac	14	12	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	92495765	92495765	C	A	SNP	EPHX4	ENST00000370383	human	ensembl	69_37n	1	known	silent	c.129	p.L43	1.000	NULL	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031	10	0	0	8	4	33.33	-	-	-	A	92495765	C	A	92495765	2	1	411	1	0	0	0	0	0	0	0	1	5219	871	31	3		3	EPHX4	1	92495765	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	35014961	92495765	156754856	11	41043										
CELSR2	0	genome.wustl.edu	37	chr1	109795620	109795620	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaggtctttcagctggacatCttctccggggagctgacagc	13	11	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	109795620	109795620	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.2919	p.I973	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	31	0	0	21	15	41.67	-	-	-	T	109795620	C	T	109795620	2	4	411	1	0	0	0	0	0	0	0	1	3251	903	32	2		2	CELSR2	1	109795620	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	17299855	109795620	139455001	12	41044										
WNT2B	0	genome.wustl.edu	37	chr1	113057712	113057712	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtctttggccgtgtcatgctCagaagtaagagcctcttcca	10	11	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	113057712	113057712	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	silent	c.399	p.L133	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	28	0	0	21	17	44.74	-	-	-	T	113057712	C	T	113057712	2	4	411	1	0	0	0	0	0	0	0	1	17484	813	29	2		2	WNT2B	1	113057712	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3262092	113057712	136192909	13	41045										
MAGI3	0	genome.wustl.edu	37	chr1	114128110	114128110	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgagtttgatgcagaatctCaaagaaaacgaacgacatct	8	7	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	114128110	114128110	C	G	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	missense	c.655	p.Q219E	1.000	smart_Guanylate_kin/L-typ_Ca_channel	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	50	0	0	57	19	25	-	-	-	G	114128110	C	G	114128110	3	3	411	1	0	0	0	0	1	0	0	0	9263	827	29	2	669	2	MAGI3	1	114128110	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1070398	114128110	135122511	14	41046										
SYT6	0	genome.wustl.edu	37	chr1	114680259	114680259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agacactgagatgcagcttgCggtcagccagctcctcatag	11	12	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	114680259	114680259	C	T	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	missense	c.929	p.R310H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	103	0	0	110	24	17.78	-	-	-	T	114680259	C	T	114680259	3	4	411	1	0	0	0	0	1	0	0	0	15570	768	27	1	623	1	SYT6	1	114680259	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	552149	114680259	134570362	15	41047										
CSDE1	0	genome.wustl.edu	37	chr1	115272884	115272884	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttatgcaaaacctaccttctCtttgcctttatttgggctag	6	10	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	115272884	115272884	C	G	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.1396	p.E466Q	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	97	0	0	82	41	33.33	-	-	-	G	115272884	C	G	115272884	3	3	411	1	0	0	0	0	1	0	0	0	3961	922	32	2	1081	2	CSDE1	1	115272884	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	592625	115272884	133977737	16	41048										
APH1A	0	genome.wustl.edu	37	chr1	150241120	150241120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgcgaccaggatgataacgcGaagcgggtccccagccacag	13	13	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	150241120	150241120	G	A	SNP	APH1A	ENST00000369109	human	ensembl	69_37n	-1	known	missense	c.91	p.R31C	1.000	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1A	HGNC	ENSG00000117362	24	0	0	45	15	25	-	-	-	A	150241120	G	A	150241120	3	1	411	1	0	0	0	0	1	0	0	0	772	1058	37	1	745	1	APH1A	1	150241120	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	34968236	150241120	99009501	17	41049										
TARS2	0	genome.wustl.edu	37	chr1	150478119	150478119	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtgacctggatgcagactCtggactgaccctcagccgga	12	13	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	150478119	150478119	C	G	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.1946	p.S649C	0.271	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	22	0	0	29	12	29.27	-	-	-	G	150478119	C	G	150478119	3	3	411	1	0	0	0	0	1	0	0	0	15652	913	32	2	2012	2	TARS2	1	150478119	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	236999	150478119	98772502	18	41050										
FLG	0	genome.wustl.edu	37	chr1	152284654	152284654	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgagtgcctggagccgtctCttgattgttcctcattacgt	10	11	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	152284654	152284654	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.2708	p.R903T	0.000	prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	250	0	0	414	74	15.16	-	-	-	G	152284654	C	G	152284654	3	3	411	1	0	0	0	0	1	0	0	0	5968	913	32	2	9481	2	FLG	1	152284654	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1806535	152284654	96965967	19	41051										
LCE1E	0	genome.wustl.edu	37	chr1	152759897	152759897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccctaagtgccctccagtctCttcctgctgcagtgtcagct	8	16	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	152759897	152759897	C	G	SNP	LCE1E	ENST00000368770	human	ensembl	69_37n	1	known	missense	c.122	p.S41C	0.985	NULL	NULL	-	no_errors	LCE1E	HGNC	ENSG00000186226	101	0	0	155	30	16.22	-	-	-	G	152759897	C	G	152759897	3	3	411	1	0	0	0	0	1	0	0	0	8717	913	32	2	124	2	LCE1E	1	152759897	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	475243	152759897	96490724	20	41052										
ADAM15	0	genome.wustl.edu	37	chr1	155030792	155030792	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgctgggctccatccgggatCtactctgggagacaatagat	12	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	155030792	155030792	C	G	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	missense	c.1792	p.L598V	0.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	21	0	0	31	10	24.39	-	-	-	G	155030792	C	G	155030792	3	3	411	1	0	0	0	0	1	0	0	0	237	912	32	2	1850	2	ADAM15	1	155030792	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2270895	155030792	94219829	21	41053										
MSTO1	0	genome.wustl.edu	37	chr1	155580049	155580049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcagcgcagtatggcgggcGgggcccgggaggtgctcaca	19	11	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	155580049	155580049	G	A	SNP	MSTO1	ENST00000245564	human	ensembl	69_37n	1	known	missense	c.10	p.G4R	1.000	NULL	pfam_Misato_II_myosin-like,pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	-	no_errors	MSTO1	HGNC	ENSG00000125459	14	0	0	23	8	25.81	-	-	-	A	155580049	G	A	155580049	3	1	411	1	0	0	0	0	1	0	0	0	9966	1116	39	1	12	1	MSTO1	1	155580049	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	549257	155580049	93670572	22	41054										
ARHGEF11	0	genome.wustl.edu	37	chr1	156917169	156917169	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cggggcatcaggttctccttCttcattcgctggtagaagat	11	10	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	156917169	156917169	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.2415	p.K805	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	47	0	0	61	20	24.69	-	-	-	T	156917169	C	T	156917169	2	4	411	1	0	0	0	0	0	0	0	1	898	912	32	2		2	ARHGEF11	1	156917169	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1337120	156917169	92333452	23	41055										
OR6N1	0	genome.wustl.edu	37	chr1	158736307	158736307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaagtggtacatgggtgtgtGaagccgggagtccaggcaga	17	6	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	158736307	158736307	G	A	SNP	OR6N1	ENST00000335094	human	ensembl	69_37n	-1	known	missense	c.166	p.H56Y	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6N1	HGNC	ENSG00000197403	52	0	0	63	20	24.1	-	-	-	A	158736307	G	A	158736307	3	1	411	1	0	0	0	0	1	0	0	0	11279	1290	45	2	775	2	OR6N1	1	158736307	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1819138	158736307	90514314	24	41056										
IGSF9	0	genome.wustl.edu	37	chr1	159907572	159907572	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcactcgtaccagccctggtCttccacccggagaccctcaa	8	18	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	159907572	159907572	C	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	missense	c.304	p.D102Y	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	38	0	0	48	21	30.43	-	-	-	A	159907572	C	A	159907572	3	1	411	1	0	0	0	0	1	0	0	0	7659	913	32	2	3307	2	IGSF9	1	159907572	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1171265	159907572	89343049	25	41057										
LY9	0	genome.wustl.edu	37	chr1	160794000	160794000	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccagtttctcagaaggaagaGagctcagccacaatctactg	9	11	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	160794000	160794000	G	A	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	silent	c.1860	p.E620	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	62	0	0	85	32	27.35	-	-	-	A	160794000	G	A	160794000	2	1	411	1	0	0	0	0	0	0	0	1	9168	933	33	2		2	LY9	1	160794000	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	886428	160794000	88456621	26	41058										
ADAMTS4	0	genome.wustl.edu	37	chr1	161161333	161161333	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtggcccccgcggggatagtGaccacattgttgtatccgta	13	11	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	161161333	161161333	G	T	SNP	ADAMTS4	ENST00000367996	human	ensembl	69_37n	-1	known	silent	c.2109	p.V703	0.999	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859	16	0	0	10	5	33.33	-	-	-	T	161161333	G	T	161161333	2	4	411	1	0	0	0	0	0	0	0	1	268	1277	45	2		2	ADAMTS4	1	161161333	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	367333	161161333	88089288	27	41059										
ATF6	0	genome.wustl.edu	37	chr1	161821621	161821621	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	taattaacacaacagagtctCtcaggtgagtgttgtagatt	9	6	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	161821621	161821621	C	T	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	missense	c.1429	p.L477F	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	85	0	0	132	41	23.7	-	-	-	T	161821621	C	T	161821621	3	4	411	1	0	0	0	0	1	0	0	0	1088	913	32	2	1471	2	ATF6	1	161821621	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	660288	161821621	87429000	28	41060										
ADCY10	0	genome.wustl.edu	37	chr1	167868724	167868724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctccggtcacagagctgccaGcagtttggtgacagaataac	11	11	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	167868724	167868724	G	C	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.579	p.C193W	1.000	superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	59	0	0	70	21	23.08	-	-	-	C	167868724	G	C	167868724	3	2	411	1	0	0	0	0	1	0	0	0	293	963	34	4	4365	4	ADCY10	1	167868724	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	6047103	167868724	81381897	29	41061										
ADCY10	0	genome.wustl.edu	37	chr1	167873126	167873126	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aacctatgggaacacttactCtccactattgcacttatgtg	6	11	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	167873126	167873126	C	T	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	silent	c.252	p.E84	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	58	0	0	89	23	20.54	-	-	-	T	167873126	C	T	167873126	2	4	411	1	0	0	0	0	0	0	0	1	293	927	32	2		2	ADCY10	1	167873126	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4402	167873126	81377495	30	41062										
ADCY10	0	genome.wustl.edu	37	chr1	167873216	167873216	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcactgctgaacttctcagtCattgcagtaaaacctggaat	8	10	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	167873216	167873216	C	T	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.162	p.M54I	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	65	0	0	99	35	25.93	-	-	-	T	167873216	C	T	167873216	3	4	411	1	0	0	0	0	1	0	0	0	293	826	29	2	4794	2	ADCY10	1	167873216	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	90	167873216	81377405	31	41063										
DCAF6	0	genome.wustl.edu	37	chr1	168044617	168044617	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgtgtttccagaccggttgGagggtgacagatcagaaggc	15	8	1	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	168044617	168044617	G	T	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	nonsense	c.2800	p.E934*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	134	0	0	140	60	30	-	-	-	T	168044617	G	T	168044617	4	4	411	1	0	0	0	0	0	1	0	0	4306	1175	41	2	2665	2	DCAF6	1	168044617	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	171401	168044617	81206004	32	41064										
NPL	0	genome.wustl.edu	37	chr1	182787764	182787764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gatacagatctcttagacttCgggcaatgtgttgatcagaa	10	7	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	182787764	182787764	C	T	SNP	NPL	ENST00000258317	human	ensembl	69_37n	1	known	silent	c.546	p.F182	0.996	pfam_Dihydrodipicolinate_synth-like	pfam_Dihydrodipicolinate_synth-like,prints_Dihydrodipicolinate_synth-like	-	no_errors	NPL	HGNC	ENSG00000135838	49	0	0	51	16	23.88	-	-	-	T	182787764	C	T	182787764	2	4	411	1	0	0	0	0	0	0	0	1	10658	883	31	1		1	NPL	1	182787764	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	14743147	182787764	66462857	33	41065										
CDC73	0	genome.wustl.edu	37	chr1	193181198	193181198	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttttttctttttcacagtttCtcaagcaagacctcccccaa	3	13	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	193181198	193181198	C	A	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.1034	p.S345Y	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	64	0	0	67	23	25.56	-	-	-	A	193181198	C	A	193181198	3	1	411	1	0	0	0	0	1	0	0	0	3114	913	32	2	1080	2	CDC73	1	193181198	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10393434	193181198	56069423	34	41066										
KCNT2	0	genome.wustl.edu	37	chr1	196300365	196300365	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgaacttcctatatatggaGaataaggtgggtaaccttta	10	5	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	196300365	196300365	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.2024	p.S675F	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	34	0	0	50	22	30.56	-	-	-	A	196300365	G	A	196300365	3	1	411	1	0	0	0	0	1	0	0	0	8146	942	33	2	1427	2	KCNT2	1	196300365	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	3119167	196300365	52950256	35	41067										
ASPM	0	genome.wustl.edu	37	chr1	197091641	197091641	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agtacgctgacatatagcgtCaaatggcacatagcaaggat	10	8	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	197091641	197091641	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.3475	p.D1159N	0.137	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,pfscan_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	62	0	0	72	27	27.27	-	-	-	T	197091641	C	T	197091641	3	4	411	1	0	0	0	0	1	0	0	0	1060	826	29	2	7018	2	ASPM	1	197091641	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	791276	197091641	52158980	36	41068										
KDM5B	0	genome.wustl.edu	37	chr1	202724449	202724449	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggtcttcaatgtgccaacaGaatgaagaaaagcacattcc	8	9	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	202724449	202724449	G	C	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.1488	p.F496L	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	45	0	0	69	13	15.85	-	-	-	C	202724449	G	C	202724449	3	2	411	1	0	0	0	0	1	0	0	0	8187	933	33	2	3214	2	KDM5B	1	202724449	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5632808	202724449	46526172	37	41069										
CYB5R1	0	genome.wustl.edu	37	chr1	202934584	202934584	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctatccaggtactgagacatCttccctccctcaggaaattt	6	13	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	202934584	202934584	C	A	SNP	CYB5R1	ENST00000367249	human	ensembl	69_37n	-1	known	missense	c.390	p.K130N	1.000	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	-	no_errors	CYB5R1	HGNC	ENSG00000159348	59	0	0	64	20	23.81	-	-	-	A	202934584	C	A	202934584	3	1	411	1	0	0	0	0	1	0	0	0	4157	912	32	2	547	2	CYB5R1	1	202934584	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	210135	202934584	46316037	38	41070										
CHIT1	0	genome.wustl.edu	37	chr1	203186226	203186226	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgacctggttttggaacttCaagctctggggtgcctgaag	13	9	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	203186226	203186226	C	G	SNP	CHIT1	ENST00000367229	human	ensembl	69_37n	-1	known	missense	c.1192	p.E398Q	0.000	NULL	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063	40	0	0	44	17	27.87	-	-	-	G	203186226	C	G	203186226	3	3	411	1	0	0	0	0	1	0	0	0	3375	835	29	2	212	2	CHIT1	1	203186226	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	251642	203186226	46064395	39	41071										
FMOD	0	genome.wustl.edu	37	chr1	203316865	203316865	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggtcgagatggagctctctCagggatcgaggcaggggacc	17	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	203316865	203316865	C	T	SNP	FMOD	ENST00000354955	human	ensembl	69_37n	-1	known	silent	c.534	p.L178	0.989	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176	41	0	0	40	18	31.03	-	-	-	T	203316865	C	T	203316865	2	4	411	1	0	0	0	0	0	0	0	1	6005	813	29	2		2	FMOD	1	203316865	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	130639	203316865	45933756	40	41072										
FMOD	0	genome.wustl.edu	37	chr1	203317297	203317297	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggatcgtagtaggtggactgCtggctgcggaggtagtggaa	19	5	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	203317297	203317297	C	G	SNP	FMOD	ENST00000354955	human	ensembl	69_37n	-1	known	missense	c.102	p.Q34H	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176	32	0	0	25	9	26.47	-	-	-	G	203317297	C	G	203317297	3	3	411	1	0	0	0	0	1	0	0	0	6005	796	28	4	1036	4	FMOD	1	203317297	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	432	203317297	45933324	41	41073										
ZC3H11A	0	genome.wustl.edu	37	chr1	203809473	203809473	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	taaggagcgattaggcatgtCagctgatccagataatgagg	13	6	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	203809473	203809473	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.1013	p.S338L	0.918	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	75	0	0	96	32	25	-	-	-	T	203809473	C	T	203809473	3	4	411	1	0	0	0	0	1	0	0	0	17656	838	29	2	1051	2	ZC3H11A	1	203809473	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	492176	203809473	45441148	42	41074										
SOX13	0	genome.wustl.edu	37	chr1	204082064	204082064	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgtccatgaggagccccatCtctgcccagctggccctgga	11	15	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	204082064	204082064	C	G	SNP	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	missense	c.21	p.I7M	0.996	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	16	0	0	17	10	37.04	-	-	-	G	204082064	C	G	204082064	3	3	411	1	0	0	0	0	1	0	0	0	15033	903	32	2	23	2	SOX13	1	204082064	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	272591	204082064	45168557	43	41075										
RPS6KC1	0	genome.wustl.edu	37	chr1	213415448	213415448	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgaaagtggtttagtgctaGaaggagacaaggaaatacat	13	3	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	213415448	213415448	G	A	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	1	known	missense	c.2629	p.E877K	0.589	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	68	0	0	56	30	34.88	-	-	-	A	213415448	G	A	213415448	3	1	411	1	0	0	0	0	1	0	0	0	13744	943	33	2	2671	2	RPS6KC1	1	213415448	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	9333384	213415448	35835173	44	41076										
GNPAT	0	genome.wustl.edu	37	chr1	231398518	231398518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgttctgctgcctagtcatcGaagttacattgacttcctca	7	11	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	231398518	231398518	G	A	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	missense	c.488	p.R163Q	1.000	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	143	0	0	188	61	24.5	-	-	-	A	231398518	G	A	231398518	3	1	411	1	0	0	0	0	1	0	0	0	6593	1058	37	1	502	1	GNPAT	1	231398518	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	17983070	231398518	17852103	45	41077										
FMN2	0	genome.wustl.edu	37	chr1	240255809	240255809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggccggcctgtcggataccGagtgtgcggacccttttgag	15	11	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	1	240255809	240255809	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.400	p.E134K	0.998	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	21	0	0	17	7	29.17	-	-	-	A	240255809	G	A	240255809	3	1	411	1	0	0	0	0	1	0	0	0	5996	1059	37	1	402	1	FMN2	1	240255809	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	8857291	240255809	8994812	46	41078										
TSSC1	0	genome.wustl.edu	37	chr2	3381440	3381440	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggaactccagcccgtagatCactggtgcatcgtcctccat	9	14	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	3381440	3381440	C	T	SNP	TSSC1	ENST00000382125	human	ensembl	69_37n	-1	known	silent	c.21	p.V7	0.996	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389	13	0	0	10	6	37.5	-	-	-	T	3381440	C	T	3381440	2	4	411	1	0	0	0	0	0	0	0	1	16762	813	29	2		2	TSSC1	2	3381440	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		3381440	239817933	47	41079										
PUM2	0	genome.wustl.edu	37	chr2	20511271	20511271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttacttaaaatctttgcaatCggcatccattccatttggca	5	10	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	20511271	20511271	C	T	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.502	p.D168N	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	108	0	0	118	16	11.94	-	-	-	T	20511271	C	T	20511271	3	4	411	1	0	0	0	0	1	0	0	0	12909	884	31	1	2760	1	PUM2	2	20511271	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	17129831	20511271	222688102	48	41080										
XDH	0	genome.wustl.edu	37	chr2	31621506	31621506	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cggagcagtgtgtacatactCatgacgatgccaggggtgca	14	9	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	31621506	31621506	C	T	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.366	p.M122I	1.000	pfam_2Fe-2S-bd,superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	45	0	0	50	25	33.33	-	-	-	T	31621506	C	T	31621506	3	4	411	1	0	0	0	0	1	0	0	0	17523	826	29	2	3763	2	XDH	2	31621506	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11110235	31621506	211577867	49	41081										
BIRC6	0	genome.wustl.edu	37	chr2	32694469	32694469	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctttcttgtaataggacactCtgttcctgcagttttgcaga	8	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	32694469	32694469	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.6134	p.S2045F	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	133	0	0	134	24	15.19	-	-	-	T	32694469	C	T	32694469	3	4	411	1	0	0	0	0	1	0	0	0	1443	913	32	2	6252	2	BIRC6	2	32694469	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1072963	32694469	210504904	50	41082										
BIRC6	0	genome.wustl.edu	37	chr2	32768600	32768600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	attgggagtgacagatgatgGagaaggaagtaagtgtttag	16	1	0	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	32768600	32768600	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.12584	p.G4195V	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	67	0	0	46	30	39.47	-	-	-	T	32768600	G	T	32768600	3	4	411	1	0	0	0	0	1	0	0	0	1443	1174	41	2	12830	2	BIRC6	2	32768600	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	74131	32768600	210430773	51	41083										
THADA	0	genome.wustl.edu	37	chr2	43779422	43779422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgctgctgctgcctgaagcaGagaattttcagcctgagata	11	9	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	43779422	43779422	G	C	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.2731	p.L911V	0.920	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	33	0	0	37	20	35.09	-	-	-	C	43779422	G	C	43779422	3	2	411	1	0	0	0	0	1	0	0	0	15935	933	33	2	3214	2	THADA	2	43779422	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	11010822	43779422	199419951	52	41084										
PLEKHH2	0	genome.wustl.edu	37	chr2	43971088	43971088	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gttgttcactgacgatccttCtggcagagatttagagcatt	10	8	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	43971088	43971088	C	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.3515	p.S1172F	0.979	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	55	0	0	69	30	30.3	-	-	-	T	43971088	C	T	43971088	3	4	411	1	0	0	0	0	1	0	0	0	12151	913	32	2	3601	2	PLEKHH2	2	43971088	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	191666	43971088	199228285	53	41085										
PSME4	0	genome.wustl.edu	37	chr2	54159138	54159138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atcagtaagcttgtggctatCaggcacaggagttaaccaag	11	8	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	54159138	54159138	C	G	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	missense	c.1150	p.D384H	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	57	0	0	33	27	45	-	-	-	G	54159138	C	G	54159138	3	3	411	1	0	0	0	0	1	0	0	0	12789	826	29	2	4529	2	PSME4	2	54159138	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10188050	54159138	189040235	54	41086										
KIAA1841	0	genome.wustl.edu	37	chr2	61324843	61324843	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtctttatcaggcctttctCtgtattgaattttcacattg	6	8	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	61324843	61324843	C	G	SNP	KIAA1841	ENST00000356719	human	ensembl	69_37n	1	known	silent	c.1221	p.L407	1.000	pfam_DUF3342	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	108	0	0	113	47	29.38	-	-	-	G	61324843	C	G	61324843	2	3	411	1	0	0	0	0	0	0	0	1	8313	900	32	2		2	KIAA1841	2	61324843	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	7165705	61324843	181874530	55	41087										
AAK1	0	genome.wustl.edu	37	chr2	69708073	69708073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtcctggtatgagactctCaacagcaacatcagcttttt	7	11	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	69708073	69708073	C	G	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.2488	p.E830Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	50	0	0	54	14	20.59	-	-	-	G	69708073	C	G	69708073	3	3	411	1	0	0	0	0	1	0	0	0	16	835	29	2	413	2	AAK1	2	69708073	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	8383230	69708073	173491300	56	41088										
C2orf42	0	genome.wustl.edu	37	chr2	70377562	70377562	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gggccgctggtcttggtactCcgccacatgcccattccggt	12	15	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	70377562	70377562	C	G	SNP	C2orf42	ENST00000264434	human	ensembl	69_37n	-1	known	missense	c.1651	p.E551Q	0.552	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998	43	0	0	42	27	39.13	-	-	-	G	70377562	C	G	70377562	3	3	411	1	0	0	0	0	1	0	0	0	2186	864	30	2	77	2	C2orf42	2	70377562	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	669489	70377562	172821811	57	41089										
NAGK	0	genome.wustl.edu	37	chr2	71305475	71305475	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctggcgctgacccagggcaGagagatccaggctcagaact	13	12	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	71305475	71305475	G	C	SNP	NAGK	ENST00000244204	human	ensembl	69_37n	1	known	missense	c.872	p.R291T	0.987	NULL	pfam_ATPase_BadF	-	no_errors	NAGK	HGNC	ENSG00000124357	115	0	0	85	68	44.44	-	-	-	C	71305475	G	C	71305475	3	2	411	1	0	0	0	0	1	0	0	0	10214	942	33	2	1048	2	NAGK	2	71305475	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	927913	71305475	171893898	58	41090										
DUSP2	0	genome.wustl.edu	37	chr2	96810080	96810080	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gagtgactgcagctgcccagGaacaggtagggcaagatctc	14	10	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	96810080	96810080	G	A	SNP	DUSP2	ENST00000288943	human	ensembl	69_37n	-1	known	silent	c.543	p.F181	0.987	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP2	HGNC	ENSG00000158050	22	0	0	18	7	28	-	-	-	A	96810080	G	A	96810080	2	1	411	1	0	0	0	0	0	0	0	1	4854	1165	41	2		2	DUSP2	2	96810080	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	25504605	96810080	146389293	59	41091										
IL1RL2	0	genome.wustl.edu	37	chr2	102851456	102851456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggcctgttgaagaacctgtCagaagaacaaatcgcggtct	11	9	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	102851456	102851456	C	T	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.1397	p.S466L	0.935	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	61	0	0	60	27	31.03	-	-	-	T	102851456	C	T	102851456	3	4	411	1	0	0	0	0	1	0	0	0	7718	838	29	2	1435	2	IL1RL2	2	102851456	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6041376	102851456	140347917	60	41092										
PSD4	0	genome.wustl.edu	37	chr2	113940771	113940771	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaggaggagagcatgttcttCagcaaccccctcttcctggc	11	13	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	113940771	113940771	C	T	SNP	PSD4	ENST00000245796	human	ensembl	69_37n	1	known	silent	c.738	p.F246	0.950	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD4	HGNC	ENSG00000125637	62	0	0	34	27	44.26	-	-	-	T	113940771	C	T	113940771	2	4	411	1	0	0	0	0	0	0	0	1	12729	825	29	2		2	PSD4	2	113940771	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11089315	113940771	129258602	61	41093										
RALB	0	genome.wustl.edu	37	chr2	121036308	121036308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggtgatcatggttggcagcgGaggcgttggcaagtcagccc	17	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	121036308	121036308	G	A	SNP	RALB	ENST00000474855	human	ensembl	69_37n	1	known	missense	c.134	p.G45E	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118	26	0	0	18	23	56.1	-	-	-	A	121036308	G	A	121036308	3	1	411	1	0	0	0	0	1	0	0	0	13094	1174	41	2	70	2	RALB	2	121036308	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	7095537	121036308	122163065	62	41094										
SCN1A	0	genome.wustl.edu	37	chr2	166850813	166850813	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atggtagtcacatattcactCtggtcatctgtttccaccat	6	11	5	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	166850813	166850813	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4695	p.Q1565H	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	86	0	0	52	31	37.35	-	-	-	G	166850813	C	G	166850813	3	3	411	1	0	0	0	0	1	0	0	0	14002	912	32	2	1342	2	SCN1A	2	166850813	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	45814505	166850813	76348560	63	41095										
TTC30B	0	genome.wustl.edu	37	chr2	178416741	178416741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttaaggttgaaggcttccaCcagagcagtctgatggagga	13	8	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	178416741	178416741	C	T	SNP	TTC30B	ENST00000408939	human	ensembl	69_37n	-1	known	missense	c.751	p.V251M	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659	52	0	0	40	21	34.43	-	-	-	T	178416741	C	T	178416741	3	4	411	1	0	0	0	0	1	0	0	0	16796	507	18	4	1250	4	TTC30B	2	178416741	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11565928	178416741	64782632	64	41096										
TTN	0	genome.wustl.edu	37	chr2	179425272	179425272	+	Frame_Shift_Del	DEL	A	A	-													0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggctcaccaacaccatatttAttaacaccagttactctaaa							TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	179425272	179425272	A	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.77883	p.N25961fs	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	50	0	0	30	15	33.33	-	-	-	-	179425272	A	-	179425272	7	5	411	1	0	1	0	1	0	0	0	0	16832	446	16	0	22540	0	TTN	2	179425272	Frame_Shift_Del	DEL	A	TCGA-AR-A2LE-01A-11D-A17W-09	1008531	179425272	63774101	65	41097										
TTN	0	genome.wustl.edu	37	chr2	179495060	179495060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gacagttgtgcaaaacaaggGagtgtattttgccttcttcc	10	8	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	179495060	179495060	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.36485	p.S12162C	0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	78	0	0	47	23	32.86	-	-	-	C	179495060	G	C	179495060	3	2	411	1	0	0	0	0	1	0	0	0	16832	1174	41	2	64000	2	TTN	2	179495060	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	69788	179495060	63704313	66	41098										
HECW2	0	genome.wustl.edu	37	chr2	197189706	197189706	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccccgaggatcatcttacctCtcggtgccaaattggattgg	10	12	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	197189706	197189706	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.739	p.E247K	1.000	pfam_C2_Ca-dep,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	90	0	0	100	16	13.79	-	-	-	T	197189706	C	T	197189706	3	4	411	1	0	0	0	0	1	0	0	0	7094	922	32	2	4075	2	HECW2	2	197189706	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	17694646	197189706	46009667	67	41099										
IHH	0	genome.wustl.edu	37	chr2	219924996	219924996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cgatcttgccttcatagcgtCcgctggcgcccagggtcttc	11	15	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	219924996	219924996	C	T	SNP	IHH	ENST00000295731	human	ensembl	69_37n	-1	known	missense	c.194	p.G65E	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pfscan_Intein_splice_site,prints_Hedgehog	-	no_errors	IHH	HGNC	ENSG00000163501	41	0	0	31	20	39.22	-	-	-	T	219924996	C	T	219924996	3	4	411	1	0	0	0	0	1	0	0	0	7661	855	30	2	1053	2	IHH	2	219924996	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	22735290	219924996	23274377	68	41100										
IHH	0	genome.wustl.edu	37	chr2	219925074	219925074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcacgagtttgcgtggcggtCgccggcggctgcccaccacc	15	16	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	219925074	219925074	C	G	SNP	IHH	ENST00000295731	human	ensembl	69_37n	-1	known	missense	c.116	p.R39P	0.989	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pfscan_Intein_splice_site,prints_Hedgehog	-	no_errors	IHH	HGNC	ENSG00000163501	17	0	0	11	12	52.17	-	-	-	G	219925074	C	G	219925074	3	3	411	1	0	0	0	0	1	0	0	0	7661	884	31	3	1131	3	IHH	2	219925074	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	78	219925074	23274299	69	41101										
STK11IP	0	genome.wustl.edu	37	chr2	220476372	220476372	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggtagtgaccacgtggttctCctcgctgtgtctcggggaac	14	11	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	220476372	220476372	C	T	SNP	STK11IP	ENST00000456909	human	ensembl	69_37n	1	novel	silent	c.2151	p.L717	0.046	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	44	0	0	21	26	55.32	-	-	-	T	220476372	C	T	220476372	2	4	411	1	0	0	0	0	0	0	0	1	15379	842	30	2		2	STK11IP	2	220476372	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	551298	220476372	22723001	70	41102										
ALPPL2	0	genome.wustl.edu	37	chr2	233271846	233271846	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aagaagctgcagcctgcacaGacagccgccaagaacctcat	9	14	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	233271846	233271846	G	A	SNP	ALPPL2	ENST00000295453	human	ensembl	69_37n	1	known	silent	c.147	p.Q49	0.000	superfamily_Alkaline_phosphatase_core	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286	52	0	0	38	18	32.14	-	-	-	A	233271846	G	A	233271846	2	1	411	1	0	0	0	0	0	0	0	1	549	933	33	2		2	ALPPL2	2	233271846	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	12795474	233271846	9927527	71	41103										
CAPN10	0	genome.wustl.edu	37	chr2	241528870	241528870	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcctgcgccgcgctgcagaaGagcaggcacctcctggacca	13	16	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	241528870	241528870	G	C	SNP	CAPN10	ENST00000391984	human	ensembl	69_37n	1	known	missense	c.252	p.K84N	0.979	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN10	HGNC	ENSG00000142330	30	0	0	28	13	31.71	-	-	-	C	241528870	G	C	241528870	3	2	411	1	0	0	0	0	1	0	0	0	2648	933	33	2	258	2	CAPN10	2	241528870	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	8257024	241528870	1670503	72	41104										
PASK	0	genome.wustl.edu	37	chr2	242063401	242063401	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cggtgagctcagcagcggtaGagtgggtggagccgggcagg	21	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	2	242063401	242063401	G	A	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.2867	p.S956F	0.979	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	46	0	0	40	16	28.57	-	-	-	A	242063401	G	A	242063401	3	1	411	1	0	0	0	0	1	0	0	0	11545	942	33	2	1136	2	PASK	2	242063401	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	534531	242063401	1135972	73	41105										
CAND2	0	genome.wustl.edu	37	chr3	12849815	12849815	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctggaagccctggacatcctCtctgacatgctgagcaggtg	12	12	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	12849815	12849815	C	G	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	silent	c.474	p.L158	0.514	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	18	0	0	25	13	34.21	-	-	-	G	12849815	C	G	12849815	2	3	411	1	0	0	0	0	0	0	0	1	2641	900	32	2		2	CAND2	3	12849815	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		12849815	185172615	74	41106										
CLASP2	0	genome.wustl.edu	37	chr3	33540163	33540163	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtagtgggatcagctcctCcagaacctgtttgtgcacgt	11	11	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	33540163	33540163	C	A	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.4502	p.G1501V	1.000	NULL	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	78	0	0	71	49	40.83	-	-	-	A	33540163	C	A	33540163	3	1	411	1	0	0	0	0	1	0	0	0	3485	855	30	2	43	2	CLASP2	3	33540163	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	20690348	33540163	164482267	75	41107										
XIRP1	0	genome.wustl.edu	37	chr3	39228389	39228389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttggagctggccagttgggtCttcctgcaccagcagcccct	12	14	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	39228389	39228389	C	G	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.2548	p.D850H	0.998	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	18	0	0	11	10	47.62	-	-	-	G	39228389	C	G	39228389	3	3	411	1	0	0	0	0	1	0	0	0	17526	913	32	2	2987	2	XIRP1	3	39228389	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	5688226	39228389	158794041	76	41108										
KIF15	0	genome.wustl.edu	37	chr3	44839448	44839448	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gccaagctgattaaaaacaaGgtaaaatactggcgtatact	8	7	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	44839448	44839448	G	C	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	missense	c.1098	p.K366N	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	42	0	0	22	7	24.14	-	-	-	C	44839448	G	C	44839448	3	2	411	1	0	0	0	0	1	0	0	0	8329	1014	35	4	1136	4	KIF15	3	44839448	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5611059	44839448	153182982	77	41109										
ZDHHC3	0	genome.wustl.edu	37	chr3	44968333	44968333	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcttcctttttcaattgttCtattccctgaaaacaagaac	3	11	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	44968333	44968333	C	G	SNP	ZDHHC3	ENST00000296127	human	ensembl	69_37n	-1	known	missense	c.832	p.E278Q	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC3	HGNC	ENSG00000163812	75	0	0	79	38	32.2	-	-	-	G	44968333	C	G	44968333	3	3	411	1	0	0	0	0	1	0	0	0	17712	922	32	2	408	2	ZDHHC3	3	44968333	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	128885	44968333	153054097	78	41110										
IMPDH2	0	genome.wustl.edu	37	chr3	49065176	49065176	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtcatgttcctcctctttGagaaaatcaatgtccctgga	7	11	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	49065176	49065176	G	C	SNP	IMPDH2	ENST00000429182	human	ensembl	69_37n	-1	putative	missense	c.292	p.Q98E	1.000	pfam_IMP_DH_GMPRt,smart_Cysta_beta_synth_core,pirsf_IMP_DH-rel	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_FMN-dep_DH,pfam_2Npropane_dOase,smart_Cysta_beta_synth_core,pirsf_IMP_DH-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IMPDH2	HGNC	ENSG00000178035	36	0	0	20	15	42.86	-	-	-	C	49065176	G	C	49065176	3	2	411	1	0	0	0	0	1	0	0	0	7781	1277	45	2	1086	2	IMPDH2	3	49065176	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4096843	49065176	148957254	79	41111										
IFRD2	0	genome.wustl.edu	37	chr3	50326327	50326327	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tcagtggccagagtgcgcagGacactgcagagggcctccat	14	12	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	50326327	50326327	G	A	SNP	IFRD2	ENST00000336089	human	ensembl	69_37n	-1	known	silent	c.1425	p.V475	0.118	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD2	HGNC	ENSG00000214706	31	0	0	17	11	39.29	-	-	-	A	50326327	G	A	50326327	2	1	411	1	0	0	0	0	0	0	0	1	7608	1161	41	2		2	IFRD2	3	50326327	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1261151	50326327	147696103	80	41112										
DCP1A	0	genome.wustl.edu	37	chr3	53321675	53321675	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtactgaggaagctggaatCattctagaagagatggtaaa	12	4	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	53321675	53321675	C	T	SNP	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	72	0	0	75	29	27.88	-	-	-	T	53321675	C	T	53321675	1	4	411	0	1	0	0	0	0	0	0	0	4329	826	29	2		2	DCP1A	3	53321675	RNA	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2995348	53321675	144700755	81	41113										
DNAH12	0	genome.wustl.edu	37	chr3	57335775	57335775	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cattttacctgtaaaaagttCaaccgggctaggaaatctgt	8	8	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	57335775	57335775	C	A	SNP	DNAH12	ENST00000462199	human	ensembl	69_37n	-1	putative	nonsense	c.1849	p.E617*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH12	HGNC	ENSG00000174844	38	0	0	28	5	15.15	-	-	-	A	57335775	C	A	57335775	4	1	411	1	0	0	0	0	0	1	0	0	4636	825	29	2	520	2	DNAH12	3	57335775	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4014100	57335775	140686655	82	41114										
DNAH12	0	genome.wustl.edu	37	chr3	57356427	57356427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atcagaaactggatcagtgaGatatgattgaaggagattca	11	4	3	5			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	57356427	57356427	G	C	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.7864	p.L2622V	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	65	0	0	60	14	18.92	-	-	-	C	57356427	G	C	57356427	3	2	411	1	0	0	0	0	1	0	0	0	4636	942	33	2	1454	2	DNAH12	3	57356427	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	20652	57356427	140666003	83	41115										
ATXN7	0	genome.wustl.edu	37	chr3	63976462	63976462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaagaggctattacgtgtttGactccaggtggaatcgactt	12	7	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	63976462	63976462	G	C	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	missense	c.1609	p.D537H	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	83	0	0	106	31	22.63	-	-	-	C	63976462	G	C	63976462	3	2	411	1	0	0	0	0	1	0	0	0	1219	1290	45	2	1711	2	ATXN7	3	63976462	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	6620035	63976462	134045968	84	41116										
SENP7	0	genome.wustl.edu	37	chr3	101046516	101046516	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atagcttcacataccttgaaGaagctttccacatactgcaa	5	11	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	101046516	101046516	G	T	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	missense	c.3009	p.F1003L	0.998	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	114	0	0	66	39	37.14	-	-	-	T	101046516	G	T	101046516	3	4	411	1	0	0	0	0	1	0	0	0	14139	933	33	2	151	2	SENP7	3	101046516	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	37070054	101046516	96975914	85	41117										
NFKBIZ	0	genome.wustl.edu	37	chr3	101576283	101576283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agccagtgcatttggttcccGatggccctgtgggagaacag	14	10	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	101576283	101576283	G	A	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	missense	c.2083	p.D695N	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	44	0	0	26	11	29.73	-	-	-	A	101576283	G	A	101576283	3	1	411	1	0	0	0	0	1	0	0	0	10455	1058	37	1	2125	1	NFKBIZ	3	101576283	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	529767	101576283	96446147	86	41118										
OSBPL11	0	genome.wustl.edu	37	chr3	125257365	125257365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cactgccaatttagtcaagtCcacatactttgtctctccat	4	13	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	125257365	125257365	C	T	SNP	OSBPL11	ENST00000296220	human	ensembl	69_37n	-1	known	missense	c.1954	p.D652N	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	143	0	0	112	58	34.12	-	-	-	T	125257365	C	T	125257365	3	4	411	1	0	0	0	0	1	0	0	0	11349	855	30	2	301	2	OSBPL11	3	125257365	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	23681082	125257365	72765065	87	41119										
SEC61A1	0	genome.wustl.edu	37	chr3	127786445	127786445	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gattgaggtctcaggttcctCtgccaaagatgtaagtagaa	11	7	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	127786445	127786445	C	T	SNP	SEC61A1	ENST00000243253	human	ensembl	69_37n	1	known	missense	c.1157	p.S386F	1.000	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A1	HGNC	ENSG00000058262	66	0	0	44	34	43.59	-	-	-	T	127786445	C	T	127786445	3	4	411	1	0	0	0	0	1	0	0	0	14088	913	32	2	1195	2	SEC61A1	3	127786445	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2529080	127786445	70235985	88	41120										
GRK7	0	genome.wustl.edu	37	chr3	141499536	141499536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgcacctccatgaactcggCatcgtctatcgggacatgaa	9	13	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	141499536	141499536	C	T	SNP	GRK7	ENST00000264952	human	ensembl	69_37n	1	known	silent	c.933	p.G311	0.276	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK7	HGNC	ENSG00000114124	55	0	0	57	26	31.33	-	-	-	T	141499536	C	T	141499536	2	4	411	1	0	0	0	0	0	0	0	1	6845	697	25	4		4	GRK7	3	141499536	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	13713091	141499536	56522894	89	41121										
ETV5	0	genome.wustl.edu	37	chr3	185769839	185769839	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttctgcatgatgcccttttCatagtaatagcggagagagc	10	9	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	3	185769839	185769839	C	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.1417	p.E473K	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	69	0	0	59	32	35.16	-	-	-	T	185769839	C	T	185769839	3	4	411	1	0	0	0	0	1	0	0	0	5319	835	29	2	249	2	ETV5	3	185769839	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	44270303	185769839	12252591	90	41122										
MYL5	0	genome.wustl.edu	37	chr4	672772	672772	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cacactcatggatcagaaccGagatggcttcattgacaagg	10	10	3	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	672772	672772	G	C	SNP	MYL5	ENST00000400159	human	ensembl	69_37n	1	known	missense	c.137	p.R46P	0.905	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL5	HGNC	ENSG00000215375	44	0	0	37	27	42.19	-	-	-	C	672772	G	C	672772	3	2	411	1	0	0	0	0	1	0	0	0	10122	1058	37	3	147	3	MYL5	4	672772	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		672772	190481504	91	41123										
UGT2B17	0	genome.wustl.edu	37	chr4	69433999	69433999	+	Frame_Shift_Del	DEL	T	T	-													0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctaatttaatagcagatgaTttactggcattgacaagaat							TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	69433999	69433999	T	-	DEL	UGT2B17	ENST00000317746	human	ensembl	69_37n	-1	known	frame_shift_del	c.204	p.K68fs	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888	40	0	0	25	3	10.71	-	-	-	-	69433999	T	-	69433999	7	5	411	1	0	1	0	1	0	0	0	0	17056	1490	52	0	1412	0	UGT2B17	4	69433999	Frame_Shift_Del	DEL	T	TCGA-AR-A2LE-01A-11D-A17W-09	68761227	69433999	121720277	92	41124										
TET2	0	genome.wustl.edu	37	chr4	106157246	106157246	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gactgagccattttcaaactCacaccttttgcaacataagc	5	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	106157246	106157246	C	T	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.2147	p.S716L	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	62	0	0	40	17	29.82	-	-	-	T	106157246	C	T	106157246	3	4	411	1	0	0	0	0	1	0	0	0	15865	838	29	2	2149	2	TET2	4	106157246	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	36723247	106157246	84997030	93	41125										
LRIT3	0	genome.wustl.edu	37	chr4	110772990	110772990	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agtgtgccaaatgaggcgctCaggtatctgaagaaccttgc	12	9	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	110772990	110772990	C	T	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	silent	c.312	p.L104	0.001	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	37	0	0	34	16	32	-	-	-	T	110772990	C	T	110772990	2	4	411	1	0	0	0	0	0	0	0	1	9015	813	29	2		2	LRIT3	4	110772990	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4615744	110772990	80381286	94	41126										
USP53	0	genome.wustl.edu	37	chr4	120213506	120213506	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atttcagatcacatgtacatGaagacaatggaaagttattt	7	5	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	120213506	120213506	G	A	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	missense	c.2362	p.E788K	0.880	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	45	0	0	34	14	29.17	-	-	-	A	120213506	G	A	120213506	3	1	411	1	0	0	0	0	1	0	0	0	17181	1291	45	2	2420	2	USP53	4	120213506	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	9440516	120213506	70940770	95	41127										
C4orf3	0	genome.wustl.edu	37	chr4	120221737	120221737	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctagaaaccgaaaatgcttaAgttcccggactttggtgttc	9	9	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	120221737	120221737	A	C	SNP	C4orf3	ENST00000399075	human	ensembl	69_37n	-1	known	missense	c.353	p.L118R	0.000	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096	41	0	0	65	19	22.62	-	-	-	C	120221737	A	C	120221737	3	2	411	1	0	0	0	0	1	0	0	0	2281	72	3	5	254	5	C4orf3	4	120221737	Missense_Mutation	SNP	A	TCGA-AR-A2LE-01A-11D-A17W-09	8231	120221737	70932539	96	41128										
KIAA1109	0	genome.wustl.edu	37	chr4	123178623	123178623	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttcaaagtgataccagtgctGatggagcagaatttgagttc	11	6	1	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	123178623	123178623	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.6592	p.D2198N	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	75	0	0	61	29	32.22	-	-	-	A	123178623	G	A	123178623	3	1	411	1	0	0	0	0	1	0	0	0	8260	1290	45	2	6746	2	KIAA1109	4	123178623	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2956886	123178623	67975653	97	41129										
FAT4	0	genome.wustl.edu	37	chr4	126411926	126411926	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagccacacaccaaaattttCaatccagaggcacagtcccc	5	16	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	126411926	126411926	C	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	nonsense	c.13949	p.S4650*	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	62	0	0	33	24	42.11	-	-	-	A	126411926	C	A	126411926	4	1	411	1	0	0	0	0	0	1	0	0	5738	838	29	2	14015	2	FAT4	4	126411926	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3233303	126411926	64742350	98	41130										
PHF17	0	genome.wustl.edu	37	chr4	129764141	129764141	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttggtcccagaattcccgatCccagcataggagaagctcct	9	13	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	129764141	129764141	C	G	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	missense	c.86	p.S29C	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	112	0	0	136	18	11.69	-	-	-	G	129764141	C	G	129764141	3	3	411	1	0	0	0	0	1	0	0	0	11902	855	30	2	92	2	PHF17	4	129764141	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3352215	129764141	61390135	99	41131										
MMAA	0	genome.wustl.edu	37	chr4	146563556	146563556	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctggaaaatcaacatttataGaatattttggaaaaatgctt	6	4	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	146563556	146563556	G	A	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	1	known	missense	c.481	p.E161K	1.000	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	88	0	0	78	35	30.97	-	-	-	A	146563556	G	A	146563556	3	1	411	1	0	0	0	0	1	0	0	0	9710	943	33	2	487	2	MMAA	4	146563556	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	16799415	146563556	44590720	100	41132										
LRBA	0	genome.wustl.edu	37	chr4	151818935	151818935	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	catcaacaagaatgctcgtaGagaaagcatttctttttgat	7	7	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	151818935	151818935	G	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.1960	p.L654V	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	49	0	0	38	21	35.59	-	-	-	C	151818935	G	C	151818935	3	2	411	1	0	0	0	0	1	0	0	0	8997	933	33	2	6807	2	LRBA	4	151818935	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5255379	151818935	39335341	101	41133										
FHDC1	0	genome.wustl.edu	37	chr4	153897510	153897510	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcccaagaccccgtcagtgCccagcgtcccccacgaacta	8	19	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	153897510	153897510	C	A	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	missense	c.3067	p.P1023T	0.001	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	20	0	0	9	7	43.75	-	-	-	A	153897510	C	A	153897510	3	1	411	1	0	0	0	0	1	0	0	0	5922	739	26	4	3109	4	FHDC1	4	153897510	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2078575	153897510	37256766	102	41134										
DCHS2	0	genome.wustl.edu	37	chr4	155219212	155219212	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcctgtgtatttatcaataGaaaacattgactgggtctct	7	8	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	155219212	155219212	G	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.4889	p.S1630C	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	54	0	0	33	15	31.25	-	-	-	C	155219212	G	C	155219212	3	2	411	1	0	0	0	0	1	0	0	0	4319	942	33	2	3893	2	DCHS2	4	155219212	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1321702	155219212	35935064	103	41135										
NEK1	0	genome.wustl.edu	37	chr4	170359303	170359303	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaactcgggactttttgtctCaacaggagaatcaacaatag	9	8	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	4	170359303	170359303	C	T	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	missense	c.2695	p.E899K	0.234	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	178	0	0	138	91	39.74	-	-	-	T	170359303	C	T	170359303	3	4	411	1	0	0	0	0	1	0	0	0	10393	835	29	2	1201	2	NEK1	4	170359303	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	15140091	170359303	20794973	104	41136										
NIPBL	0	genome.wustl.edu	37	chr5	37007574	37007574	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttacagacacaacaattcttCaggtaagattttttggtaag	7	6	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	37007574	37007574	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	nonsense	c.4237	p.Q1413*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	60	0	0	37	21	36.21	-	-	-	T	37007574	C	T	37007574	4	4	411	1	0	0	0	0	0	1	0	0	10500	827	29	2	4303	2	NIPBL	5	37007574	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		37007574	143907686	105	41137										
HEATR7B2	0	genome.wustl.edu	37	chr5	41051159	41051159	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gacagattcctcttccttttCattctcatgaaagttagttt	5	9	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	41051159	41051159	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1264	p.E422K	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	44	0	0	43	19	30.65	-	-	-	T	41051159	C	T	41051159	3	4	411	1	0	0	0	0	1	0	0	0	7086	835	29	2	3613	2	HEATR7B2	5	41051159	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4043585	41051159	139864101	106	41138										
HCN1	0	genome.wustl.edu	37	chr5	45645500	45645500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tttaaataattcatcttgatCactttggggtccaggatgat	8	6	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	45645500	45645500	C	T	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	silent	c.636	p.V212	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	59	0	0	56	25	30.86	-	-	-	T	45645500	C	T	45645500	2	4	411	1	0	0	0	0	0	0	0	1	7047	813	29	2		2	HCN1	5	45645500	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4594341	45645500	135269760	107	41139										
ZNF366	0	genome.wustl.edu	37	chr5	71756940	71756940	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cccacgttgcacaggtcgatCatctgagagtcatacttggg	11	11	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	71756940	71756940	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.384	p.M128I	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	103	0	0	66	42	38.89	-	-	-	T	71756940	C	T	71756940	3	4	411	1	0	0	0	0	1	0	0	0	17966	826	29	2	1866	2	ZNF366	5	71756940	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	26111440	71756940	109158320	108	41140										
CCNI2	0	genome.wustl.edu	37	chr5	132086586	132086586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agacttcacaaagcactatgGctctgactattccccgaatg	7	12	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	132086586	132086586	G	A	SNP	CCNI2	ENST00000378731	human	ensembl	69_37n	1	novel	missense	c.671	p.G224D	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNI2	HGNC	ENSG00000205089	114	0	0	80	42	34.43	-	-	-	A	132086586	G	A	132086586	3	1	411	1	0	0	0	0	1	0	0	0	2956	1203	42	4	685	4	CCNI2	5	132086586	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	60329646	132086586	48828674	109	41141										
C5orf15	0	genome.wustl.edu	37	chr5	133304255	133304255	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtgctggccccctcatcctCttcgggacggcagcggccat	12	16	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	133304255	133304255	C	T	SNP	C5orf15	ENST00000231512	human	ensembl	69_37n	-1	known	silent	c.21	p.K7	0.128	NULL	NULL	-	no_errors	C5orf15	HGNC	ENSG00000113583	8	0	0	16	5	23.81	-	-	-	T	133304255	C	T	133304255	2	4	411	1	0	0	0	0	0	0	0	1	2304	912	32	2		2	C5orf15	5	133304255	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1217669	133304255	47611005	110	41142										
PCDHA2	0	genome.wustl.edu	37	chr5	140175048	140175048	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagatataggagtaaatgctCttctctcctacaagctcagc	7	11	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	140175048	140175048	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.499	p.L167F	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	55	0	0	43	13	23.21	-	-	-	T	140175048	C	T	140175048	3	4	411	1	0	0	0	0	1	0	0	0	11597	913	32	2	501	2	PCDHA2	5	140175048	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6870793	140175048	40740212	111	41143										
PCDHB2	0	genome.wustl.edu	37	chr5	140476760	140476760	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccagtttcaggaagagctttGaattcacttaagtgttaata	8	6	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	140476760	140476760	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.2386	p.E796K	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	92	0	0	65	43	39.81	-	-	-	A	140476760	G	A	140476760	3	1	411	1	0	0	0	0	1	0	0	0	11615	1291	45	2	2388	2	PCDHB2	5	140476760	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	301712	140476760	40438500	112	41144										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720105	140720105	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cactgcgctcctttgattatGagcagttgcgagacttgcaa	10	10	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	140720105	140720105	G	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.1567	p.E523Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	76	0	0	51	31	37.8	-	-	-	C	140720105	G	C	140720105	3	2	411	1	0	0	0	0	1	0	0	0	11627	1291	45	2	1569	2	PCDHGA2	5	140720105	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	243345	140720105	40195155	113	41145										
PCDHGB1	0	genome.wustl.edu	37	chr5	140731549	140731549	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tccgccctcttcgatatggtGccacgcgccgcagagcccgg	12	17	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	140731549	140731549	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.1722	p.V574	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	9	0	0	6	6	50	-	-	-	A	140731549	G	A	140731549	2	1	411	1	0	0	0	0	0	0	0	1	11635	1306	46	4		4	PCDHGB1	5	140731549	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	11444	140731549	40183711	114	41146										
PCDHGA6	0	genome.wustl.edu	37	chr5	140754953	140754953	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaacaccacctctgtctacaGaaacaatcatctctctaaat	3	13	5	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	5	140754953	140754953	G	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	nonsense	c.1303	p.E435*	0.097	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	38	0	0	21	20	48.78	-	-	-	T	140754953	G	T	140754953	4	4	411	1	0	0	0	0	0	1	0	0	11631	943	33	2	1305	2	PCDHGA6	5	140754953	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	23404	140754953	40160307	115	41147										
HIST1H4B	0	genome.wustl.edu	37	chr6	26027324	26027324	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gagaacgccacgagtctcctCataaatcaaaccggaaattc	7	12	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	26027324	26027324	C	G	SNP	HIST1H4B	ENST00000377364	human	ensembl	69_37n	-1	known	missense	c.157	p.E53Q	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4B	HGNC	ENSG00000124529	38	0	0	49	25	33.78	-	-	-	G	26027324	C	G	26027324	3	3	411	1	0	0	0	0	1	0	0	0	7217	835	29	2	158	2	HIST1H4B	6	26027324	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		26027324	145087743	116	41148										
ABT1	0	genome.wustl.edu	37	chr6	26598517	26598517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgcaccgtttcacctggtccCacctcagcgagcacctcgcc	8	19	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	26598517	26598517	C	T	SNP	ABT1	ENST00000274849	human	ensembl	69_37n	1	known	missense	c.463	p.H155Y	1.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109	65	0	0	81	42	34.15	-	-	-	T	26598517	C	T	26598517	3	4	411	1	0	0	0	0	1	0	0	0	101	594	21	4	473	4	ABT1	6	26598517	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	571193	26598517	144516550	117	41149										
ZNF192	0	genome.wustl.edu	37	chr6	28121504	28121504	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	catcttattggtcatcagagGagccacactggggagaaacc	11	10	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	28121504	28121504	G	A	SNP	ZNF192	ENST00000330236	human	ensembl	69_37n	1	known	silent	c.1446	p.R482	0.194	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF192	HGNC	ENSG00000198315	57	0	0	27	20	42.55	-	-	-	A	28121504	G	A	28121504	2	1	411	1	0	0	0	0	0	0	0	1	17852	1165	41	2		2	ZNF192	6	28121504	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1522987	28121504	142993563	118	41150										
ZKSCAN4	0	genome.wustl.edu	37	chr6	28213380	28213380	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggtttgagctgtgactgaaGaccttaccacattcttcaca	8	10	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	28213380	28213380	G	A	SNP	ZKSCAN4	ENST00000377294	human	ensembl	69_37n	-1	known	silent	c.1152	p.V384	0.014	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626	93	0	0	78	45	36.59	-	-	-	A	28213380	G	A	28213380	2	1	411	1	0	0	0	0	0	0	0	1	17785	929	33	2		2	ZKSCAN4	6	28213380	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	91876	28213380	142901687	119	41151										
MDC1	0	genome.wustl.edu	37	chr6	30673173	30673173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agtagcctgatatgtgggctCagaagtgacaggctggtctg	15	7	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	30673173	30673173	C	G	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.3787	p.E1263Q	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	136	0	0	98	64	39.51	-	-	-	G	30673173	C	G	30673173	3	3	411	1	0	0	0	0	1	0	0	0	9474	835	29	2	2506	2	MDC1	6	30673173	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2459793	30673173	140441894	120	41152										
MSH5	0	genome.wustl.edu	37	chr6	31711932	31711932	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcagcccccaggagatttaaGatttaccccgattccactgc	8	14	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	31711932	31711932	G	A	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.554	p.R185K	0.000	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	57	0	0	28	14	33.33	-	-	-	A	31711932	G	A	31711932	3	1	411	1	0	0	0	0	1	0	0	0	9945	942	33	2	576	2	MSH5	6	31711932	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1038759	31711932	139403135	121	41153										
FKBP5	0	genome.wustl.edu	37	chr6	35610571	35610571	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agtggctgtggggctttcttCattgttcttggcaccttcat	11	9	4	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	35610571	35610571	C	A	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	nonsense	c.31	p.E11*	1.000	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	198	0	0	177	84	32.18	-	-	-	A	35610571	C	A	35610571	4	1	411	1	0	0	0	0	0	1	0	0	5957	835	29	2	1440	2	FKBP5	6	35610571	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3898639	35610571	135504496	122	41154										
CDKN1A	0	genome.wustl.edu	37	chr6	36652171	36652171	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggcaggcggcctggcacctCacctgctctgctgcagggga	15	14	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	36652171	36652171	C	G	SNP	CDKN1A	ENST00000448526	human	ensembl	69_37n	1	known	nonsense	c.395	p.S132*	0.075	NULL	pfam_CDI	-	no_errors	CDKN1A	HGNC	ENSG00000124762	23	0	0	19	14	42.42	-	-	-	G	36652171	C	G	36652171	4	3	411	1	0	0	0	0	0	1	0	0	3187	838	29	2	295	2	CDKN1A	6	36652171	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1041600	36652171	134462896	123	41155										
PEX6	0	genome.wustl.edu	37	chr6	42934116	42934116	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agggtgctccagggggagctGaatggtctccaggatctcct	15	10	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	42934116	42934116	G	A	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	nonsense	c.2164	p.Q722*	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	31	0	0	27	11	28.95	-	-	-	A	42934116	G	A	42934116	4	1	411	1	0	0	0	0	0	1	0	0	11824	1299	45	2	806	2	PEX6	6	42934116	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	6281945	42934116	128180951	124	41156										
DST	0	genome.wustl.edu	37	chr6	56473006	56473007	+	Frame_Shift_Ins	INS	-	-	T													0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttttatcaggcagtgttataINSttttttaaaattgatgctgt							TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	56473006	56473007	-	T	INS	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6321_6320	p.N2107fs	0.006:0.002	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	61	0	0	41	17	29.31	-	-	-	T	56473007	-	T	56473006	7	5	411	1	0	1	1	0	0	0	0	0	4818	464	16	0		0	DST	6	56473006	Frame_Shift_Ins	INS	-	TCGA-AR-A2LE-01A-11D-A17W-09	13538890	56473006	114642061	125	41157										
OR2A4	0	genome.wustl.edu	37	chr6	132021713	132021713	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	catgggattaaagaggctgtGaaacagcaggagatatttct	12	5	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	132021713	132021713	G	A	SNP	OR2A4	ENST00000315453	human	ensembl	69_37n	-1	known	missense	c.829	p.H277Y	0.988	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658	73	0	0	52	22	29.73	-	-	-	A	132021713	G	A	132021713	3	1	411	1	0	0	0	0	1	0	0	0	11052	1290	45	2	106	2	OR2A4	6	132021713	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	75548707	132021713	39093354	126	41158										
STXBP5	0	genome.wustl.edu	37	chr6	147525812	147525812	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagtccgagcactttcagctCtgcaaggtgaacggagcgcg	13	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	147525812	147525812	C	T	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	silent	c.144	p.L48	1.000	smart_WD40_repeat,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	15	0	0	14	9	39.13	-	-	-	T	147525812	C	T	147525812	2	4	411	1	0	0	0	0	0	0	0	1	15447	900	32	2		2	STXBP5	6	147525812	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	15504099	147525812	23589255	127	41159										
PLEKHG1	0	genome.wustl.edu	37	chr6	151151893	151151893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtttcccagccgacggtcccCgcaggagaatgaggatgatg	14	11	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	151151893	151151893	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.1646	p.P549L	0.053	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	61	0	0	67	13	16.25	-	-	-	T	151151893	C	T	151151893	3	4	411	1	0	0	0	0	1	0	0	0	12142	652	23	1	1700	1	PLEKHG1	6	151151893	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3626081	151151893	19963174	128	41160										
TIAM2	0	genome.wustl.edu	37	chr6	155451141	155451141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcaatgctggagagctgagcGaggctgagggctccttcctg	16	10	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	6	155451141	155451141	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.784	p.E262K	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	21	0	0	19	12	38.71	-	-	-	A	155451141	G	A	155451141	3	1	411	1	0	0	0	0	1	0	0	0	15986	1059	37	1	786	1	TIAM2	6	155451141	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4299248	155451141	15663926	129	41161										
RAPGEF5	0	genome.wustl.edu	37	chr7	22200137	22200137	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggaaaatgaaatacttactGacgacggtgcattccaagta	9	7	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	22200137	22200137	G	A	SNP	RAPGEF5	ENST00000344041	human	ensembl	69_37n	-1	known	missense	c.1066	p.H356Y	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	70	0	0	29	19	39.58	-	-	-	A	22200137	G	A	22200137	3	1	411	1	0	0	0	0	1	0	0	0	13130	1304	45	2	1178	2	RAPGEF5	7	22200137	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		22200137	136938526	130	41162										
FKBP9	0	genome.wustl.edu	37	chr7	33044955	33044955	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	accaggaagccaaacacgatGaactctaaacctggcatgaa	8	11	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	33044955	33044955	G	C	SNP	FKBP9	ENST00000538336	human	ensembl	69_37n	1	known	missense	c.1864	p.E622Q	1.000	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642	128	0	0	142	34	19.32	-	-	-	C	33044955	G	C	33044955	3	2	411	1	0	0	0	0	1	0	0	0	5961	1291	45	2	1743	2	FKBP9	7	33044955	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	10844818	33044955	126093708	131	41163										
PCLO	0	genome.wustl.edu	37	chr7	82585189	82585189	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttccaattctggctcttcgtCaaaatacaaacttgtttttt	4	9	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	82585189	82585189	C	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.5080	p.D1694H	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	86	0	0	60	32	34.78	-	-	-	G	82585189	C	G	82585189	3	3	411	1	0	0	0	0	1	0	0	0	11656	826	29	2	10449	2	PCLO	7	82585189	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	49540234	82585189	76553474	132	41164										
SEMA3D	0	genome.wustl.edu	37	chr7	84628816	84628816	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgatgtcttcgatttcgtttCttcttcatttcctgcatgtg	7	9	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	84628816	84628816	C	G	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	missense	c.2274	p.K758N	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	167	0	0	124	48	27.91	-	-	-	G	84628816	C	G	84628816	3	3	411	1	0	0	0	0	1	0	0	0	14115	912	32	2	63	2	SEMA3D	7	84628816	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2043627	84628816	74509847	133	41165										
OPN1SW	0	genome.wustl.edu	37	chr7	128415772	128415772	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gacaggggcaatgtggtactGaggcccatcccacggcccca	13	14	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	128415772	128415772	G	A	SNP	OPN1SW	ENST00000249389	human	ensembl	69_37n	-1	known	nonsense	c.73	p.Q25*	1.000	prints_Opsin_blue	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_blue,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617	33	0	0	18	10	35.71	-	-	-	A	128415772	G	A	128415772	4	1	411	1	0	0	0	0	0	1	0	0	10953	1299	45	2	993	2	OPN1SW	7	128415772	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	43786956	128415772	30722891	134	41166										
LRGUK	0	genome.wustl.edu	37	chr7	133943091	133943091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aattgcctttccagcctccgGaggggagcatttcttcacac	9	13	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	133943091	133943091	G	C	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	missense	c.2281	p.E761Q	0.022	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	76	0	0	78	14	15.22	-	-	-	C	133943091	G	C	133943091	3	2	411	1	0	0	0	0	1	0	0	0	9009	1175	41	2	2355	2	LRGUK	7	133943091	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5527319	133943091	25195572	135	41167										
LRGUK	0	genome.wustl.edu	37	chr7	133948633	133948633	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	attttcacatgaaaaagagtCtcaccaacacagacaacact	4	11	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	133948633	133948633	C	T	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	missense	c.2384	p.S795F	0.001	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	65	0	0	46	31	40.26	-	-	-	T	133948633	C	T	133948633	3	4	411	1	0	0	0	0	1	0	0	0	9009	913	32	2	2462	2	LRGUK	7	133948633	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	5542	133948633	25190030	136	41168										
DPP6	0	genome.wustl.edu	37	chr7	154564564	154564564	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttaatccccaggctggaagtGagaaccccagcatttcccta	8	13	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	7	154564564	154564564	G	T	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	nonsense	c.1048	p.E350*	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	105	0	0	64	40	38.46	-	-	-	T	154564564	G	T	154564564	4	4	411	1	0	0	0	0	0	1	0	0	4765	1291	45	2	1202	2	DPP6	7	154564564	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	20615931	154564564	4574099	137	41169										
SLC18A1	0	genome.wustl.edu	37	chr8	20036764	20036764	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcagttgtttttatgagctGagatggcttcagtggctgga	14	5	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	20036764	20036764	G	C	SNP	SLC18A1	ENST00000276373	human	ensembl	69_37n	-1	known	nonsense	c.356	p.S119*	0.011	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	126	0	0	51	74	59.2	-	-	-	C	20036764	G	C	20036764	4	2	411	1	0	0	0	0	0	1	0	0	14514	1294	45	2	1277	2	SLC18A1	8	20036764	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		20036764	126327258	138	41170										
KIF13B	0	genome.wustl.edu	37	chr8	28967486	28967486	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctacagccagcacgctcctGaggtacttttcaatataagc	7	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	28967486	28967486	G	C	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	silent	c.4032	p.L1344	0.050	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	45	0	0	19	24	55.81	-	-	-	C	28967486	G	C	28967486	2	2	411	1	0	0	0	0	0	0	0	1	8327	1277	45	2		2	KIF13B	8	28967486	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	8930722	28967486	117396536	139	41171										
AGPAT6	0	genome.wustl.edu	37	chr8	41476329	41476329	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	acctgcctcccatgactagaGaggtgagtgcctgccccagg	12	14	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	41476329	41476329	G	A	SNP	AGPAT6	ENST00000396987	human	ensembl	69_37n	1	known	missense	c.1180	p.E394K	0.960	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT6	HGNC	ENSG00000158669	105	0	0	36	67	65.05	-	-	-	A	41476329	G	A	41476329	3	1	411	1	0	0	0	0	1	0	0	0	391	943	33	2	1218	2	AGPAT6	8	41476329	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	12508843	41476329	104887693	140	41172										
ZFHX4	0	genome.wustl.edu	37	chr8	77763444	77763444	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gctgcgacaatgtgtaacctCtgccagcgcagtttccgtac	10	13	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	77763444	77763444	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.4287	p.L1429	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	42	0	0	22	8	26.67	-	-	-	A	77763444	C	A	77763444	2	1	411	1	0	0	0	0	0	0	0	1	17731	900	32	2		2	ZFHX4	8	77763444	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	36287115	77763444	68600578	141	41173										
ZFHX4	0	genome.wustl.edu	37	chr8	77763688	77763688	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgatagtagctctattccaGatgacatgggctctgaacca	10	9	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	77763688	77763688	G	C	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.4531	p.D1511H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	23	0	0	31	17	35.42	-	-	-	C	77763688	G	C	77763688	3	2	411	1	0	0	0	0	1	0	0	0	17731	942	33	2	4565	2	ZFHX4	8	77763688	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	244	77763688	68600334	142	41174										
SLC10A5	0	genome.wustl.edu	37	chr8	82606549	82606549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcagagcaaagagatagcccCcaccccctcctgggcacgtg	11	16	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	82606549	82606549	C	T	SNP	SLC10A5	ENST00000518568	human	ensembl	69_37n	-1	known	missense	c.659	p.G220E	1.000	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598	23	0	0	14	5	26.32	-	-	-	T	82606549	C	T	82606549	3	4	411	1	0	0	0	0	1	0	0	0	14466	623	22	4	659	4	SLC10A5	8	82606549	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4842861	82606549	63757473	143	41175										
TMEM67	0	genome.wustl.edu	37	chr8	94767236	94767236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tccttctgttgttcctccctCgcttcttacaggcccagacc	6	17	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	94767236	94767236	C	T	SNP	TMEM67	ENST00000453321	human	ensembl	69_37n	1	known	missense	c.94	p.R32C	0.000	NULL	pfam_Meckelin,superfamily_Growth_fac_rcpt	-	no_errors	TMEM67	HGNC	ENSG00000164953	52	0	0	42	37	46.84	-	-	-	T	94767236	C	T	94767236	3	4	411	1	0	0	0	0	1	0	0	0	16291	884	31	1	96	1	TMEM67	8	94767236	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	12160687	94767236	51596786	144	41176										
RAD54B	0	genome.wustl.edu	37	chr8	95399225	95399225	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atcttacttttcagtaggtcGaagttcgtggataaccgcta	9	8	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	95399225	95399225	G	A	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	nonsense	c.1972	p.R658*	0.915	pfam_HDA_complex_subunit-2/3,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	73	0	0	58	27	31.76	-	-	-	A	95399225	G	A	95399225	4	1	411	1	0	0	0	0	0	1	0	0	13075	1066	37	1	780	1	RAD54B	8	95399225	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	631989	95399225	50964797	145	41177										
TSPYL5	0	genome.wustl.edu	37	chr8	98288845	98288845	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggattggctcaccccaggctGagtagtctccattggctgct	12	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	98288845	98288845	G	A	SNP	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	nonsense	c.1228	p.Q410*	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	76	0	0	81	46	36.22	-	-	-	A	98288845	G	A	98288845	4	1	411	1	0	0	0	0	0	1	0	0	16758	1299	45	2	29	2	TSPYL5	8	98288845	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2889620	98288845	48075177	146	41178										
ATP6V1C1	0	genome.wustl.edu	37	chr8	104053148	104053148	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttgcatgcggcaacttcaaaGaacaataatcttgctgtcac	7	10	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	8	104053148	104053148	G	A	SNP	ATP6V1C1	ENST00000395862	human	ensembl	69_37n	1	known	silent	c.84	p.K28	0.998	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097	68	0	0	55	26	32.1	-	-	-	A	104053148	G	A	104053148	2	1	411	1	0	0	0	0	0	0	0	1	1184	933	33	2		2	ATP6V1C1	8	104053148	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5764303	104053148	42310874	147	41179										
AK3	0	genome.wustl.edu	37	chr9	4713067	4713067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaatcttgttggtttctgttCcggagaatgtttccagcacc	9	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	4713067	4713067	C	T	SNP	AK3	ENST00000381809	human	ensembl	69_37n	-1	known	missense	c.593	p.G198E	1.000	tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853	118	0	0	115	23	16.67	-	-	-	T	4713067	C	T	4713067	3	4	411	1	0	0	0	0	1	0	0	0	441	855	30	2	94	2	AK3	9	4713067	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		4713067	136500364	148	41180										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18706935	18706935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	catgcagcggggaaattcctGagttcaacccagacgagaca	11	11	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	18706935	18706935	G	A	SNP	ADAMTSL1	ENST00000380548	human	ensembl	69_37n	1	novel	missense	c.1765	p.E589K	0.848	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	53	0	0	39	23	37.1	-	-	-	A	18706935	G	A	18706935	3	1	411	1	0	0	0	0	1	0	0	0	274	1291	45	2	1823	2	ADAMTSL1	9	18706935	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	13993868	18706935	122506496	149	41181										
IFNA21	0	genome.wustl.edu	37	chr9	21166061	21166061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttcattccttcctccttaatCtttcttgaaaaatttttgat	2	9	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	21166061	21166061	C	G	SNP	IFNA21	ENST00000380225	human	ensembl	69_37n	-1	known	missense	c.551	p.R184T	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA21	HGNC	ENSG00000137080	141	0	0	106	63	37.28	-	-	-	G	21166061	C	G	21166061	3	3	411	1	0	0	0	0	1	0	0	0	7592	913	32	2	22	2	IFNA21	9	21166061	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2459126	21166061	120047370	150	41182										
PIGO	0	genome.wustl.edu	37	chr9	35090233	35090233	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgtctcttccgcagcccttGactctcacacaggaaaggcc	8	16	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	35090233	35090233	G	A	SNP	PIGO	ENST00000341666	human	ensembl	69_37n	-1	known	nonsense	c.2899	p.Q967*	0.997	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282	13	0	0	17	6	26.09	-	-	-	A	35090233	G	A	35090233	4	1	411	1	0	0	0	0	0	1	0	0	11968	1299	45	2	382	2	PIGO	9	35090233	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	13924172	35090233	106123198	151	41183										
RGP1	0	genome.wustl.edu	37	chr9	35749242	35749242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtctggcctgccgggcgcttCcggccggaagggactccgcg	17	15	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	35749242	35749242	C	T	SNP	RGP1	ENST00000456972	human	ensembl	69_37n	1	known	missense	c.40	p.P14S	0.998	NULL	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185	22	0	0	17	11	39.29	-	-	-	T	35749242	C	T	35749242	3	4	411	1	0	0	0	0	1	0	0	0	13367	855	30	2	42	2	RGP1	9	35749242	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	659009	35749242	105464189	152	41184										
PAX5	0	genome.wustl.edu	37	chr9	37002728	37002728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggagtacgacgagccggccGaatccgtgctcaccgaggac	14	13	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	37002728	37002728	G	A	SNP	PAX5	ENST00000358127	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.999	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	9	0	0	13	4	23.53	-	-	-	A	37002728	G	A	37002728	3	1	411	1	0	0	0	0	1	0	0	0	11555	1059	37	1	678	1	PAX5	9	37002728	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1253486	37002728	104210703	153	41185										
IGFBPL1	0	genome.wustl.edu	37	chr9	38411522	38411522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atggcactggtacacaccctCatcctcctttcgcagggggt	10	14	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	38411522	38411522	C	T	SNP	IGFBPL1	ENST00000377694	human	ensembl	69_37n	-1	known	missense	c.712	p.E238K	0.996	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Prot_inh_Kazal,pfam_IGFBP-like,pfam_Kazal-type_dom,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	IGFBPL1	HGNC	ENSG00000137142	51	0	0	39	21	35	-	-	-	T	38411522	C	T	38411522	3	4	411	1	0	0	0	0	1	0	0	0	7639	835	29	2	128	2	IGFBPL1	9	38411522	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1408794	38411522	102801909	154	41186										
ANXA1	0	genome.wustl.edu	37	chr9	75775762	75775762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctaattgagattttggcatCaagaactaacaaagaaatca	6	6	3	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	75775762	75775762	C	T	SNP	ANXA1	ENST00000257497	human	ensembl	69_37n	1	known	missense	c.428	p.S143L	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	99	0	0	68	40	37.04	-	-	-	T	75775762	C	T	75775762	3	4	411	1	0	0	0	0	1	0	0	0	713	838	29	2	446	2	ANXA1	9	75775762	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	37364240	75775762	65437669	155	41187										
PRUNE2	0	genome.wustl.edu	37	chr9	79323854	79323854	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atcactctgttccacaagtcGagactgtcaggggccgtctg	11	12	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	79323854	79323854	G	A	SNP	PRUNE2	ENST00000426088	human	ensembl	69_37n	-1	known	nonsense	c.1300	p.R434*	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRUNE2	HGNC	ENSG00000106772	116	0	0	108	48	30.77	-	-	-	A	79323854	G	A	79323854	4	1	411	1	0	0	0	0	0	1	0	0	12721	1045	37	1	5978	1	PRUNE2	9	79323854	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	3548092	79323854	61889577	156	41188										
FBP1	0	genome.wustl.edu	37	chr9	97401448	97401448	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cgcgatgcccgccttgcgcaCcgccgaagagatggctttga	13	14	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	97401448	97401448	C	G	SNP	FBP1	ENST00000375326	human	ensembl	69_37n	-1	known	missense	c.145	p.V49L	1.000	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPase_class-1/SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPase_class-1/SBPase,prints_SBPase	-	no_errors	FBP1	HGNC	ENSG00000165140	11	0	0	15	9	37.5	-	-	-	G	97401448	C	G	97401448	3	3	411	1	0	0	0	0	1	0	0	0	5751	507	18	4	899	4	FBP1	9	97401448	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	18077594	97401448	43811983	157	41189										
SLC35D2	0	genome.wustl.edu	37	chr9	99107596	99107596	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggtacctttgggtccattttCtgtttggtataaactccatt	8	8	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	99107596	99107596	C	G	SNP	SLC35D2	ENST00000253270	human	ensembl	69_37n	-1	known	missense	c.576	p.Q192H	1.000	pfam_DUF250,pfam_UAA	pfam_DUF250,pfam_UAA	-	no_errors	SLC35D2	HGNC	ENSG00000130958	102	0	0	70	32	31.37	-	-	-	G	99107596	C	G	99107596	3	3	411	1	0	0	0	0	1	0	0	0	14671	912	32	2	461	2	SLC35D2	9	99107596	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1706148	99107596	42105835	158	41190										
TGFBR1	0	genome.wustl.edu	37	chr9	101891278	101891278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgaaattgacttaattcctcGagataggccgtttgtatgtg	10	6	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	101891278	101891278	G	A	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	1	known	missense	c.239	p.R80Q	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	67	0	0	43	26	37.68	-	-	-	A	101891278	G	A	101891278	3	1	411	1	0	0	0	0	1	0	0	0	15916	1058	37	1	245	1	TGFBR1	9	101891278	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2783682	101891278	39322153	159	41191										
NR4A3	0	genome.wustl.edu	37	chr9	102595017	102595017	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtttgcctggcaaataaaaActgcccagtagacaagagac	9	9	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	102595017	102595017	A	G	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	missense	c.1031	p.N344S	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	51	0	0	46	25	35.21	-	-	-	G	102595017	A	G	102595017	3	3	411	1	0	0	0	0	1	0	0	0	10707	43	2	5	1041	5	NR4A3	9	102595017	Missense_Mutation	SNP	A	TCGA-AR-A2LE-01A-11D-A17W-09	703739	102595017	38618414	160	41192										
RAD23B	0	genome.wustl.edu	37	chr9	110081065	110081065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttacgagaatatggtaactGagatcatgtcaatgggctat	10	6	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	110081065	110081065	G	A	SNP	RAD23B	ENST00000358015	human	ensembl	69_37n	1	known	missense	c.586	p.E196K	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318	96	0	0	66	41	38.32	-	-	-	A	110081065	G	A	110081065	3	1	411	1	0	0	0	0	1	0	0	0	13066	1291	45	2	608	2	RAD23B	9	110081065	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	7486048	110081065	31132366	161	41193										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123292327	123292327	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctctccagatgacacattctCatcaggacatgccatctgag	7	13	4	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	123292327	123292327	C	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	nonsense	c.754	p.E252*	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	152	0	0	109	90	45.23	-	-	-	A	123292327	C	A	123292327	4	1	411	1	0	0	0	0	0	1	0	0	3175	835	29	2	5051	2	CDK5RAP2	9	123292327	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	13211262	123292327	17921104	162	41194										
ZBTB43	0	genome.wustl.edu	37	chr9	129595948	129595948	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tttcactcacaagagtcagaGagatcggcacatgagcatgc	10	10	3	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	129595948	129595948	G	C	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	1	known	missense	c.1160	p.R387T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	29	0	0	28	13	31.71	-	-	-	C	129595948	G	C	129595948	3	2	411	1	0	0	0	0	1	0	0	0	17640	942	33	2	1162	2	ZBTB43	9	129595948	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	6303621	129595948	11617483	163	41195										
LAMC3	0	genome.wustl.edu	37	chr9	133901845	133901845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gccagtacctgcgccccggcGaggacgagcgcgtggccttc	15	16	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	133901845	133901845	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	1	known	missense	c.547	p.E183K	0.786	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	13	0	0	13	14	51.85	-	-	-	A	133901845	G	A	133901845	3	1	411	1	0	0	0	0	1	0	0	0	8670	1059	37	1	553	1	LAMC3	9	133901845	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4305897	133901845	7311586	164	41196										
ADAMTS13	0	genome.wustl.edu	37	chr9	136294981	136294981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttccaaacgcttccatcctCgtgcccactcctccgtcccg	5	21	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	136294981	136294981	C	T	SNP	ADAMTS13	ENST00000371911	human	ensembl	69_37n	1	known	missense	c.986	p.S329L	0.001	NULL	pfam_Peptidase_M12B,pfam_Pept_M10_metallopeptidase,pfscan_Peptidase_M12B	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	17	0	0	10	10	50	-	-	-	T	136294981	C	T	136294981	3	4	411	1	0	0	0	0	1	0	0	0	258	899	31	1		1	ADAMTS13	9	136294981	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2393136	136294981	4918450	165	41197										
MAMDC4	0	genome.wustl.edu	37	chr9	139753465	139753465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccctgctctcagacaaggggGagctgaaggtactgctgcac	13	12	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	9	139753465	139753465	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	1	known	missense	c.3202	p.E1068K	0.973	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	26	0	0	26	11	29.73	-	-	-	A	139753465	G	A	139753465	3	1	411	1	0	0	0	0	1	0	0	0	9275	1175	41	2	3059	2	MAMDC4	9	139753465	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	3458484	139753465	1459966	166	41198										
CUBN	0	genome.wustl.edu	37	chr10	17126443	17126443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctctgggtccgtgtagttccCaccacaacgcagatccgcta	9	15	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	17126443	17126443	C	T	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.2128	p.G710R	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	53	0	0	33	22	40	-	-	-	T	17126443	C	T	17126443	3	4	411	1	0	0	0	0	1	0	0	0	4082	594	21	4	8947	4	CUBN	10	17126443	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		17126443	118408304	167	41199										
ARMC4	0	genome.wustl.edu	37	chr10	28270402	28270402	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccataaaacttaccaatttaGacatattttctgaaaatttt	2	7	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	28270402	28270402	G	C	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	missense	c.929	p.S310C	0.883	superfamily_GSKIP/TIF31_domain	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	79	0	0	46	26	36.11	-	-	-	C	28270402	G	C	28270402	3	2	411	1	0	0	0	0	1	0	0	0	957	942	33	2	2261	2	ARMC4	10	28270402	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	11143959	28270402	107264345	168	41200										
MTPAP	0	genome.wustl.edu	37	chr10	30653345	30653345	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttcttgaccagctcttagatGatggtgatgtttagctccct	9	9	2	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	30653345	30653345	G	A	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.949	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	35	0	0	23	13	36.11	-	-	-	A	30653345	G	A	30653345	1	1	411	0	1	0	0	0	0	0	0	0	10028	1305	45	2		2	MTPAP	10	30653345	RNA	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2382943	30653345	104881402	169	41201										
ZNF488	0	genome.wustl.edu	37	chr10	48371219	48371219	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttgccacagaatgctccactCtgtagcacttttctgggtgc	9	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	48371219	48371219	C	G	SNP	ZNF488	ENST00000395702	human	ensembl	69_37n	1	known	silent	c.687	p.L229	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF488	HGNC	ENSG00000165388	48	0	0	45	25	35.71	-	-	-	G	48371219	C	G	48371219	2	3	411	1	0	0	0	0	0	0	0	1	18036	900	32	2		2	ZNF488	10	48371219	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	17717874	48371219	87163528	170	41202										
ERCC6	0	genome.wustl.edu	37	chr10	50682204	50682204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttcttctagttcatcatcagGaagacctttgagattcttgg	8	8	6	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	50682204	50682204	G	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2467	p.P823T	0.938	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	71	0	0	62	40	39.22	-	-	-	T	50682204	G	T	50682204	3	4	411	1	0	0	0	0	1	0	0	0	5254	1174	41	2	2050	2	ERCC6	10	50682204	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2310985	50682204	84852543	171	41203										
C10orf32	0	genome.wustl.edu	37	chr10	104614094	104614094	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcgcggttcggtcagtccgtGaaggggcttctcacggagaa	16	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	104614094	104614094	G	A	SNP	C10orf32	ENST00000299353	human	ensembl	69_37n	1	known	silent	c.51	p.V17	1.000	NULL	NULL	-	no_errors	C10orf32	HGNC	ENSG00000166275	12	0	0	22	12	35.29	-	-	-	A	104614094	G	A	104614094	2	1	411	1	0	0	0	0	0	0	0	1	1612	1277	45	2		2	C10orf32	10	104614094	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	53931890	104614094	30920653	172	41204										
FAM196A	0	genome.wustl.edu	37	chr10	128974483	128974483	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaggacagctgtgtgtccctCtgctcattctgtgcctcgca	11	13	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	10	128974483	128974483	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	69_37n	-1	known	silent	c.177	p.Q59	0.999	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916	81	0	0	57	15	20.83	-	-	-	T	128974483	C	T	128974483	2	4	411	1	0	0	0	0	0	0	0	1	5570	912	32	2		2	FAM196A	10	128974483	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	24360389	128974483	6560264	173	41205										
LSP1	0	genome.wustl.edu	37	chr11	1904706	1904706	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaagtccacctggaggagttGagtctgagcaaggaggggcc	17	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	1904706	1904706	G	A	SNP	LSP1	ENST00000311604	human	ensembl	69_37n	1	known	silent	c.414	p.L138	0.000	prints_Lymphspecific	pfam_Caldesmon_LSP,prints_Lymphspecific	-	no_errors	LSP1	HGNC	ENSG00000130592	30	0	0	29	13	30.95	-	-	-	A	1904706	G	A	1904706	2	1	411	1	0	0	0	0	0	0	0	1	9129	1281	45	2		2	LSP1	11	1904706	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		1904706	133101810	174	41206										
APBB1	0	genome.wustl.edu	37	chr11	6432496	6432496	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctggttgtgggcagcgtgcaGaggcaggggtaggctcagtg	20	7	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	6432496	6432496	G	A	SNP	APBB1	ENST00000389906	human	ensembl	69_37n	-1	known	silent	c.82	p.L28	0.999	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,pfam_PTB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB1	HGNC	ENSG00000166313	27	0	0	17	9	34.62	-	-	-	A	6432496	G	A	6432496	2	1	411	1	0	0	0	0	0	0	0	1	760	933	33	2		2	APBB1	11	6432496	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4527790	6432496	128574020	175	41207										
ARFIP2	0	genome.wustl.edu	37	chr11	6500132	6500132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcaatctgcagctctagctCcaggtccacagtccgtgagc	9	15	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	6500132	6500132	C	T	SNP	ARFIP2	ENST00000254584	human	ensembl	69_37n	-1	known	missense	c.373	p.E125K	1.000	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254	35	0	0	19	9	32.14	-	-	-	T	6500132	C	T	6500132	3	4	411	1	0	0	0	0	1	0	0	0	857	864	30	2	668	2	ARFIP2	11	6500132	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	67636	6500132	128506384	176	41208										
DNHD1	0	genome.wustl.edu	37	chr11	6568698	6568698	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgcagcaccggacagtcgctGagctcaaccacatggctgag	12	13	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	6568698	6568698	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.6529	p.E2177K	0.184	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	33	0	0	22	9	29.03	-	-	-	A	6568698	G	A	6568698	3	1	411	1	0	0	0	0	1	0	0	0	4703	1291	45	2	6612	2	DNHD1	11	6568698	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	68566	6568698	128437818	177	41209										
DCHS1	0	genome.wustl.edu	37	chr11	6645007	6645007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agtgaaacgcacgaggccatGagggccagggtcagcgtcag	16	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	6645007	6645007	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.7900	p.H2634Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	36	0	0	31	13	29.55	-	-	-	A	6645007	G	A	6645007	3	1	411	1	0	0	0	0	1	0	0	0	4318	1290	45	2	2000	2	DCHS1	11	6645007	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	76309	6645007	128361509	178	41210										
DENND5A	0	genome.wustl.edu	37	chr11	9202526	9202526	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gggaattccaaatgccatgaGaatctcagagacttcctgga	10	9	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	9202526	9202526	G	A	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	missense	c.1243	p.L415F	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	48	0	0	33	14	29.79	-	-	-	A	9202526	G	A	9202526	3	1	411	1	0	0	0	0	1	0	0	0	4472	942	33	2	2692	2	DENND5A	11	9202526	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2557519	9202526	125803990	179	41211										
PLEKHA7	0	genome.wustl.edu	37	chr11	16837807	16837807	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcgtcggtccacatgagatGagttctgcaagtggggagac	15	8	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	16837807	16837807	G	A	SNP	PLEKHA7	ENST00000448080	human	ensembl	69_37n	-1	known	missense	c.1871	p.S624L	0.999	NULL	pfam_Pleckstrin_homology,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA7	HGNC	ENSG00000166689	44	0	0	31	30	49.18	-	-	-	A	16837807	G	A	16837807	3	1	411	1	0	0	0	0	1	0	0	0	12135	1294	45	2	1542	2	PLEKHA7	11	16837807	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	7635281	16837807	118168709	180	41212										
MADD	0	genome.wustl.edu	37	chr11	47330876	47330876	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	accaaatgcaattctgggaaGatgccttcttagatgctgtg	10	8	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	47330876	47330876	G	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.3976	p.D1326N	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	114	0	0	95	23	19.49	-	-	-	A	47330876	G	A	47330876	3	1	411	1	0	0	0	0	1	0	0	0	9219	942	33	2	4078	2	MADD	11	47330876	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	30493069	47330876	87675640	181	41213										
MYBPC3	0	genome.wustl.edu	37	chr11	47363598	47363598	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	accagctccttcccattcttCagccacacaccccgaacatt	3	19	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	47363598	47363598	C	T	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	silent	c.1734	p.L578	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	102	0	0	97	38	28.15	-	-	-	T	47363598	C	T	47363598	2	4	411	1	0	0	0	0	0	0	0	1	10085	813	29	2		2	MYBPC3	11	47363598	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	32722	47363598	87642918	182	41214										
PPP1R14B	0	genome.wustl.edu	37	chr11	64012235	64012235	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtcggggaccgtcacttcttCtggggtgtgctcagcttctg	14	11	5	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	64012235	64012235	C	G	SNP	PPP1R14B	ENST00000309318	human	ensembl	69_37n	-1	known	missense	c.435	p.Q145H	1.000	pfam_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14B	HGNC	ENSG00000173457	29	0	0	21	15	41.67	-	-	-	G	64012235	C	G	64012235	3	3	411	1	0	0	0	0	1	0	0	0	12437	912	32	2	12	2	PPP1R14B	11	64012235	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	16648637	64012235	70994281	183	41215										
ATG2A	0	genome.wustl.edu	37	chr11	64679447	64679447	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgaggccagccatggagaaGaagaggtctgtgggtgaagt	18	5	1	5			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	64679447	64679447	G	A	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.499	p.L167F	1.000	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	56	0	0	52	21	28.77	-	-	-	A	64679447	G	A	64679447	3	1	411	1	0	0	0	0	1	0	0	0	1097	933	33	2	4853	2	ATG2A	11	64679447	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	667212	64679447	70327069	184	41216										
POLA2	0	genome.wustl.edu	37	chr11	65064614	65064614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtcctcggctgtgtctgtgtGaaccctgggcgccttaccaa	12	13	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	65064614	65064614	G	A	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	silent	c.1671	p.V557	1.000	pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	67	0	0	66	28	29.79	-	-	-	A	65064614	G	A	65064614	2	1	411	1	0	0	0	0	0	0	0	1	12262	1277	45	2		2	POLA2	11	65064614	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	385167	65064614	69941902	185	41217										
SSH3	0	genome.wustl.edu	37	chr11	67077339	67077339	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcagtacgaatgcagcctgGagcaggccctgcgccacgtg	14	13	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	67077339	67077339	G	C	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	missense	c.1309	p.E437Q	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	19	0	0	15	7	31.82	-	-	-	C	67077339	G	C	67077339	3	2	411	1	0	0	0	0	1	0	0	0	15277	1175	41	2	1355	2	SSH3	11	67077339	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2012725	67077339	67929177	186	41218										
RSF1	0	genome.wustl.edu	37	chr11	77404597	77404597	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctccatctgggatgatcatCagaggagggcgaaggcaggc	15	9	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	77404597	77404597	C	G	SNP	RSF1	ENST00000308488	human	ensembl	69_37n	-1	known	silent	c.2775	p.L925	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649	76	0	0	87	33	27.5	-	-	-	G	77404597	C	G	77404597	2	3	411	1	0	0	0	0	0	0	0	1	13785	813	29	2		2	RSF1	11	77404597	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10327258	77404597	57601919	187	41219										
USP28	0	genome.wustl.edu	37	chr11	113704158	113704158	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtacctgctgttcctcagatGatcggaatgctccctttaat	8	11	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	113704158	113704158	G	A	SNP	USP28	ENST00000003302	human	ensembl	69_37n	-1	known	missense	c.743	p.S248L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_UBA-like,pfscan_Peptidase_C19	-	no_errors	USP28	HGNC	ENSG00000048028	59	0	0	39	25	39.06	-	-	-	A	113704158	G	A	113704158	3	1	411	1	0	0	0	0	1	0	0	0	17155	1294	45	2	2566	2	USP28	11	113704158	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	36299561	113704158	21302358	188	41220										
CADM1	0	genome.wustl.edu	37	chr11	115111079	115111079	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcttattgacttggcaactGatggtcgcaacctctccctc	7	14	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	11	115111079	115111079	G	A	SNP	CADM1	ENST00000545380	human	ensembl	69_37n	-1	novel	nonsense	c.181	p.Q61*	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CADM1	HGNC	ENSG00000182985	67	0	0	51	27	34.62	-	-	-	A	115111079	G	A	115111079	4	1	411	1	0	0	0	0	0	1	0	0	2591	1280	45	2	1178	2	CADM1	11	115111079	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1406921	115111079	19895437	189	41221										
SLC6A12	0	genome.wustl.edu	37	chr12	313809	313809	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cccaacgccacctccaggaaGaacaccgggatgccgcagac	10	17	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	313809	313809	G	A	SNP	SLC6A12	ENST00000535347	human	ensembl	69_37n	-1	putative	missense	c.152	p.S51F	1.000	NULL	NULL	-	no_stop_codon	SLC6A12	HGNC	ENSG00000111181	30	0	0	25	15	37.5	-	-	-	A	313809	G	A	313809	3	1	411	1	0	0	0	0	1	0	0	0	14764	933	33	2	1626	2	SLC6A12	12	313809	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		313809	133538086	190	41222										
CD27	0	genome.wustl.edu	37	chr12	6560131	6560131	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctggaatgttccttgttttCaccctggccggggccctgtt	11	12	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	6560131	6560131	C	T	SNP	CD27	ENST00000266557	human	ensembl	69_37n	1	known	silent	c.609	p.F203	0.287	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_7,prints_Fas_rcpt,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	CD27	HGNC	ENSG00000139193	106	0	0	127	23	15.33	-	-	-	T	6560131	C	T	6560131	2	4	411	1	0	0	0	0	0	0	0	1	3019	825	29	2		2	CD27	12	6560131	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6246322	6560131	127291764	191	41223										
PRH1	0	genome.wustl.edu	37	chr12	11035142	11035142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttgtggctttccctgaggagGtggtggaccttgttgctgct	15	8	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	11035142	11035142	G	A	SNP	PRH1	ENST00000428168	human	ensembl	69_37n	-1	known	missense	c.256	p.P86S	0.023	NULL	NULL	-	no_errors	PRH1	HGNC	ENSG00000231887	149	0	0	183	25	12.02	-	-	-	A	11035142	G	A	11035142	3	1	411	1	0	0	0	0	1	0	0	0	12563	1276	44	4		4	PRH1	12	11035142	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4475011	11035142	122816753	192	41224										
PRB3	0	genome.wustl.edu	37	chr12	11421068	11421068	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtttcctccttgtgggcgtcGtccttctggctttcctggag	12	12	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	11421068	11421068	G	A	SNP	PRB3	ENST00000381842	human	ensembl	69_37n	-1	known	nonsense	c.115	p.R39*	0.001	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	111	0	0	110	57	33.93	-	-	-	A	11421068	G	A	11421068	4	1	411	1	0	0	0	0	0	1	0	0	12525	1153	40	1	822	1	PRB3	12	11421068	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	385926	11421068	122430827	193	41225										
C12orf40	0	genome.wustl.edu	37	chr12	40110611	40110611	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gttactctccaagaccaacaGacagctgtttcagttctagt	7	11	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	40110611	40110611	G	C	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.1465	p.D489H	0.920	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	146	0	0	123	74	37.56	-	-	-	C	40110611	G	C	40110611	3	2	411	1	0	0	0	0	1	0	0	0	1698	942	33	2	1511	2	C12orf40	12	40110611	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	28689543	40110611	93741284	194	41226										
RACGAP1	0	genome.wustl.edu	37	chr12	50384112	50384112	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctaggttagtggcagacttgCttttgctcccaaatctacaa	8	10	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	50384112	50384112	C	G	SNP	RACGAP1	ENST00000312377	human	ensembl	69_37n	-1	known	missense	c.1838	p.S613T	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800	79	0	0	65	36	35.29	-	-	-	G	50384112	C	G	50384112	3	3	411	1	0	0	0	0	1	0	0	0	13060	797	28	4	64	4	RACGAP1	12	50384112	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10273501	50384112	83467783	195	41227										
DNAJC14	0	genome.wustl.edu	37	chr12	56221447	56221447	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaaaagagggccagagccagGagcagcaaagcacccagcag	13	11	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	56221447	56221447	G	A	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	silent	c.996	p.L332	0.833	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	44	0	0	45	12	21.05	-	-	-	A	56221447	G	A	56221447	2	1	411	1	0	0	0	0	0	0	0	1	4668	1161	41	2		2	DNAJC14	12	56221447	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5837335	56221447	77630448	196	41228										
FRS2	0	genome.wustl.edu	37	chr12	69967870	69967870	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tccattggaggcgagggtttCtaacgctgaaagcagcacac	12	10	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	69967870	69967870	C	T	SNP	FRS2	ENST00000299293	human	ensembl	69_37n	1	known	missense	c.662	p.S221F	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225	45	0	0	25	15	37.5	-	-	-	T	69967870	C	T	69967870	3	4	411	1	0	0	0	0	1	0	0	0	6110	913	32	2	680	2	FRS2	12	69967870	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	13746423	69967870	63884025	197	41229										
LRRIQ1	0	genome.wustl.edu	37	chr12	85531727	85531727	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aatacagagaaatagatttaGaggattttatatttgatgaa	8	1	0	5			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	85531727	85531727	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.4309	p.E1437K	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	62	0	0	53	15	22.06	-	-	-	A	85531727	G	A	85531727	3	1	411	1	0	0	0	0	1	0	0	0	9095	943	33	2	4383	2	LRRIQ1	12	85531727	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	15563857	85531727	48320168	198	41230										
FGD6	0	genome.wustl.edu	37	chr12	95566496	95566496	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tcaccaagaccaagatcattCtgttcctcctgggatgctcc	7	14	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	95566496	95566496	C	T	SNP	FGD6	ENST00000451107	human	ensembl	69_37n	-1	known	missense	c.41	p.R14K	0.000	NULL	NULL	-	no_errors	FGD6	HGNC	ENSG00000180263	66	0	0	37	31	45.59	-	-	-	T	95566496	C	T	95566496	3	4	411	1	0	0	0	0	1	0	0	0	5883	912	32	2	1902	2	FGD6	12	95566496	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10034769	95566496	38285399	199	41231										
NTN4	0	genome.wustl.edu	37	chr12	96181027	96181027	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aggatgagtctgccatggcaGatggcaggtgagccaggtga	17	7	1	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	96181027	96181027	G	A	SNP	NTN4	ENST00000343702	human	ensembl	69_37n	-1	known	missense	c.275	p.S92F	0.561	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN4	HGNC	ENSG00000074527	74	0	0	45	26	36.62	-	-	-	A	96181027	G	A	96181027	3	1	411	1	0	0	0	0	1	0	0	0	10775	942	33	2	1647	2	NTN4	12	96181027	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	614531	96181027	37670868	200	41232										
TMPO	0	genome.wustl.edu	37	chr12	98926657	98926657	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gggatattgttcctttttctGaacttggaactactccctct	7	10	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	98926657	98926657	G	A	SNP	TMPO	ENST00000266732	human	ensembl	69_37n	1	known	missense	c.622	p.E208K	1.000	NULL	pfam_LAP2alpha,pfam_Thymopoietin_LEM,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM,pfscan_Thymopoietin_LEM	-	no_errors	TMPO	HGNC	ENSG00000120802	29	0	0	32	17	34.69	-	-	-	A	98926657	G	A	98926657	3	1	411	1	0	0	0	0	1	0	0	0	16332	1291	45	2	636	2	TMPO	12	98926657	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2745630	98926657	34925238	201	41233										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100452152	100452152	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttttccctaaatgtttatctGataaatagtccataaaagaa	4	6	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	100452152	100452152	G	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	nonsense	c.2903	p.S968*	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	32	0	0	19	11	36.67	-	-	-	C	100452152	G	C	100452152	4	2	411	1	0	0	0	0	0	1	0	0	17066	1294	45	2	1523	2	UHRF1BP1L	12	100452152	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1525495	100452152	33399743	202	41234										
OAS3	0	genome.wustl.edu	37	chr12	113400658	113400658	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggacggtcaactatagcactGaggacccagccatgagaatg	12	10	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	113400658	113400658	G	A	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	missense	c.2035	p.E679K	0.003	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	56	0	0	41	17	29.31	-	-	-	A	113400658	G	A	113400658	3	1	411	1	0	0	0	0	1	0	0	0	10874	1291	45	2	2069	2	OAS3	12	113400658	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	12948506	113400658	20451237	203	41235										
DTX1	0	genome.wustl.edu	37	chr12	113530988	113530988	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtccccgcactcccggtgaaGaacttgaatggtactgggcc	12	13	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	113530988	113530988	G	A	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	silent	c.963	p.K321	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	13	0	0	10	6	37.5	-	-	-	A	113530988	G	A	113530988	2	1	411	1	0	0	0	0	0	0	0	1	4828	933	33	2		2	DTX1	12	113530988	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	130330	113530988	20320907	204	41236										
TAOK3	0	genome.wustl.edu	37	chr12	118682749	118682749	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttcttaattgccaccacctCactggtgtgagcatttgtag	8	11	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	118682749	118682749	C	G	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	missense	c.142	p.E48Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	94	0	0	66	55	45.45	-	-	-	G	118682749	C	G	118682749	3	3	411	1	0	0	0	0	1	0	0	0	15641	835	29	2	2626	2	TAOK3	12	118682749	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	5151761	118682749	15169146	205	41237										
CIT	0	genome.wustl.edu	37	chr12	120139493	120139493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	acctgcacgattgagacaggGaagctgttggaagaggcggc	16	8	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	120139493	120139493	G	A	SNP	CIT	ENST00000392520	human	ensembl	69_37n	-1	novel	missense	c.4190	p.S1397F	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Pkinase_C,superfamily_HR1_rho-bd,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CIT	HGNC	ENSG00000122966	85	0	0	72	20	21.51	-	-	-	A	120139493	G	A	120139493	3	1	411	1	0	0	0	0	1	0	0	0	3468	1165	41	2	755	2	CIT	12	120139493	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1456744	120139493	13712402	206	41238										
COX6A1	0	genome.wustl.edu	37	chr12	120875960	120875960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttggtgtgtcctcggtttctCggctgctgggtcggtcccgc	15	12	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	120875960	120875960	C	T	SNP	COX6A1	ENST00000229379	human	ensembl	69_37n	1	known	missense	c.31	p.R11W	0.000	pirsf_Cyt_c_oxidase_su6a	pfam_Cyt_c_oxidase_su6a,superfamily_Cyt_c_oxidase_su6a,pirsf_Cyt_c_oxidase_su6a	-	no_errors	COX6A1	HGNC	ENSG00000111775	49	0	0	42	21	33.33	-	-	-	T	120875960	C	T	120875960	3	4	411	1	0	0	0	0	1	0	0	0	3804	875	31	1	33	1	COX6A1	12	120875960	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	736467	120875960	12975935	207	41239										
MORN3	0	genome.wustl.edu	37	chr12	122107379	122107379	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccgacttttttgggcacttaGagactggcatggtggctgct	13	9	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	122107379	122107379	G	C	SNP	MORN3	ENST00000355329	human	ensembl	69_37n	-1	known	missense	c.11	p.S4C	0.016	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714	75	0	0	58	27	31.76	-	-	-	C	122107379	G	C	122107379	3	2	411	1	0	0	0	0	1	0	0	0	9781	942	33	2	731	2	MORN3	12	122107379	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1231419	122107379	11744516	208	41240										
TMEM132D	0	genome.wustl.edu	37	chr12	130184752	130184752	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctccagctcggccacgcacaGccccaggtccccctgcagcc	9	22	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	12	130184752	130184752	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	silent	c.571	p.L191	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	15	0	0	12	7	36.84	-	-	-	A	130184752	G	A	130184752	2	1	411	1	0	0	0	0	0	0	0	1	16142	962	34	4		4	TMEM132D	12	130184752	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	8077373	130184752	3667143	209	41241										
PAN3	0	genome.wustl.edu	37	chr13	28834664	28834664	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaagcaaacgcaccttccttCttcatggctgatgaactccg	7	13	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	13	28834664	28834664	C	T	SNP	PAN3	ENST00000380958	human	ensembl	69_37n	1	known	silent	c.1329	p.F443	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_cat_dom	-	no_errors	PAN3	HGNC	ENSG00000152520	51	0	0	43	26	37.68	-	-	-	T	28834664	C	T	28834664	2	4	411	1	0	0	0	0	0	0	0	1	11488	912	32	2		2	PAN3	13	28834664	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		28834664	86335214	210	41242										
PAN3	0	genome.wustl.edu	37	chr13	28862169	28862169	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	actggagaccgttatctgttGaaactctttagggatcatct	9	8	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	13	28862169	28862169	G	T	SNP	PAN3	ENST00000380958	human	ensembl	69_37n	1	known	missense	c.2433	p.L811F	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_cat_dom	-	no_errors	PAN3	HGNC	ENSG00000152520	68	0	0	51	40	43.96	-	-	-	T	28862169	G	T	28862169	3	4	411	1	0	0	0	0	1	0	0	0	11488	1281	45	2	2503	2	PAN3	13	28862169	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	27505	28862169	86307709	211	41243										
GPR180	0	genome.wustl.edu	37	chr13	95264620	95264620	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgccgaagggaatccatttGatcattttagtgctggagaa	11	6	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	13	95264620	95264620	G	C	SNP	GPR180	ENST00000376958	human	ensembl	69_37n	1	known	missense	c.481	p.D161H	0.997	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	-	no_errors	GPR180	HGNC	ENSG00000152749	48	0	0	56	16	22.22	-	-	-	C	95264620	G	C	95264620	3	2	411	1	0	0	0	0	1	0	0	0	6726	1290	45	2	491	2	GPR180	13	95264620	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	66402451	95264620	19905258	212	41244										
UGGT2	0	genome.wustl.edu	37	chr13	96489411	96489411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	acaccacagccagtcttgagGaagagacttaatggcgactt	10	10	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	13	96489411	96489411	G	A	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.4330	p.P1444S	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	132	0	0	97	52	34.9	-	-	-	A	96489411	G	A	96489411	3	1	411	1	0	0	0	0	1	0	0	0	17039	1174	41	2	232	2	UGGT2	13	96489411	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1224791	96489411	18680467	213	41245										
MYO16	0	genome.wustl.edu	37	chr13	109318347	109318347	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tagtgaagcgcatgcgctgtGagcaaatcaaagcctactat	10	9	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	13	109318347	109318347	G	A	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.76	p.E26K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	34	0	0	31	19	38	-	-	-	A	109318347	G	A	109318347	3	1	411	1	0	0	0	0	1	0	0	0	10136	1291	45	2	78	2	MYO16	13	109318347	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	12828936	109318347	5851531	214	41246										
RAB2B	0	genome.wustl.edu	37	chr14	21944761	21944761	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gacatgacttccccacacctGaaagagaaagcacactcccg	7	15	0	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	21944761	21944761	G	A	SNP	RAB2B	ENST00000461909	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.943	-	-	-	no_errors	RAB2B	HGNC	ENSG00000129472	33	0	0	40	16	28.57	-	-	-	A	21944761	G	A	21944761	1	1	411	0	1	0	0	0	0	0	0	0	13001	1305	45	2		2	RAB2B	14	21944761	RNA	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		21944761	85404779	215	41247										
BAZ1A	0	genome.wustl.edu	37	chr14	35331501	35331501	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	caactccacacaaggctgttGcacagaatggttcgttcaaa	8	11	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	35331501	35331501	G	A	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	silent	c.141	p.C47	1.000	pfam_WSTF_Acf1_Cbp146,pfscan_WSTF_Acf1_Cbp146	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	44	0	0	49	9	15.52	-	-	-	A	35331501	G	A	35331501	2	1	411	1	0	0	0	0	0	0	0	1	1333	1311	46	4		4	BAZ1A	14	35331501	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	13386740	35331501	72018039	216	41248										
FSCB	0	genome.wustl.edu	37	chr14	44975332	44975332	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tacttggacatgggtctcttCagcaggtctgggctccgctt	12	11	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	44975332	44975332	C	T	SNP	FSCB	ENST00000340446	human	ensembl	69_37n	-1	known	missense	c.859	p.E287K	0.067	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	58	0	0	46	23	33.33	-	-	-	T	44975332	C	T	44975332	3	4	411	1	0	0	0	0	1	0	0	0	6115	835	29	2	1622	2	FSCB	14	44975332	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	9643831	44975332	62374208	217	41249										
CDKL1	0	genome.wustl.edu	37	chr14	50862439	50862439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cttgagcattcggatttcccGaagggcaattttctttatga	9	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	50862439	50862439	G	A	SNP	CDKL1	ENST00000395834	human	ensembl	69_37n	-1	known	missense	c.151	p.R51W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL1	HGNC	ENSG00000100490	80	0	0	45	22	32.84	-	-	-	A	50862439	G	A	50862439	3	1	411	1	0	0	0	0	1	0	0	0	3182	1057	37	1	961	1	CDKL1	14	50862439	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5887107	50862439	56487101	218	41250										
NAA30	0	genome.wustl.edu	37	chr14	57858277	57858277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgcagcttaagaagcccttCgggcagggaggttgagcctg	15	10	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	57858277	57858277	C	T	SNP	NAA30	ENST00000556492	human	ensembl	69_37n	1	known	missense	c.602	p.S201L	0.975	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA30	HGNC	ENSG00000139977	27	0	0	19	5	20.83	-	-	-	T	57858277	C	T	57858277	3	4	411	1	0	0	0	0	1	0	0	0	10194	893	31	1	604	1	NAA30	14	57858277	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6995838	57858277	49491263	219	41251										
PRKCH	0	genome.wustl.edu	37	chr14	61789027	61789027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccaacaaacccacgtacaacGaggagttttgcgctaacgtc	8	13	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	61789027	61789027	G	A	SNP	PRKCH	ENST00000332981	human	ensembl	69_37n	1	known	missense	c.208	p.E70K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075	15	0	0	14	8	36.36	-	-	-	A	61789027	G	A	61789027	3	1	411	1	0	0	0	0	1	0	0	0	12594	1059	37	1	210	1	PRKCH	14	61789027	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	3930750	61789027	45560513	220	41252										
SYT16	0	genome.wustl.edu	37	chr14	62550950	62550950	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tcagcccatctgcggtttctCacagtgatagtacttcatcc	7	13	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	62550950	62550950	C	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	missense	c.1471	p.H491Y	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	52	0	0	47	24	33.8	-	-	-	T	62550950	C	T	62550950	3	4	411	1	0	0	0	0	1	0	0	0	15564	826	29	2	1489	2	SYT16	14	62550950	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	761923	62550950	44798590	221	41253										
SYNE2	0	genome.wustl.edu	37	chr14	64625489	64625489	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgttatcattggagaccttGagatgccaggtggagaacct	13	7	1	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	64625489	64625489	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.15939	p.L5313F	0.148	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	63	0	0	53	27	33.75	-	-	-	C	64625489	G	C	64625489	3	2	411	1	0	0	0	0	1	0	0	0	15538	1281	45	2	16277	2	SYNE2	14	64625489	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2074539	64625489	42724051	222	41254										
PAPLN	0	genome.wustl.edu	37	chr14	73727999	73727999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gctgtgtgggccagcccagcCatggtgagtggacaccccct	14	14	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	73727999	73727999	C	G	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	1	known	missense	c.2242	p.H748D	0.480	superfamily_Prot_inh_Kunz-m	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	18	0	0	13	10	43.48	-	-	-	G	73727999	C	G	73727999	3	3	411	1	0	0	0	0	1	0	0	0	11501	594	21	4	2223	4	PAPLN	14	73727999	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	9102510	73727999	33621541	223	41255										
CDC42BPB	0	genome.wustl.edu	37	chr14	103429404	103429404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	caacattaatttaccagtatCtgctctgaatttttcttcca	3	10	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	14	103429404	103429404	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.2815	p.D939N	1.000	pfam_Myotonic_dystrophy_kinase_coil	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	346	0	0	346	64	15.61	-	-	-	T	103429404	C	T	103429404	3	4	411	1	0	0	0	0	1	0	0	0	3102	913	32	2	2392	2	CDC42BPB	14	103429404	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	29701405	103429404	3920136	224	41256										
NIPA1	0	genome.wustl.edu	37	chr15	23060892	23060892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	taagccaggaagtttccaatCtggccaacagccactgtcaa	8	12	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	23060892	23060892	C	G	SNP	NIPA1	ENST00000337435	human	ensembl	69_37n	-1	known	missense	c.240	p.Q80H	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113	27	0	0	34	9	20.93	-	-	-	G	23060892	C	G	23060892	3	3	411	1	0	0	0	0	1	0	0	0	10494	912	32	2	761	2	NIPA1	15	23060892	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		23060892	79470500	225	41257										
RYR3	0	genome.wustl.edu	37	chr15	33988664	33988664	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtgtcaggatgggcaaggaaGaggagttgctcatgatcaat	15	5	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	33988664	33988664	G	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	nonsense	c.6106	p.E2036*	1.000	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	72	0	0	67	30	30.93	-	-	-	T	33988664	G	T	33988664	4	4	411	1	0	0	0	0	0	1	0	0	13856	943	33	2	6260	2	RYR3	15	33988664	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	10927772	33988664	68542728	226	41258										
RYR3	0	genome.wustl.edu	37	chr15	34129917	34129917	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gtagaaatgatcttgaaattCtttgacatgttcttgaaact	7	5	3	5			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	34129917	34129917	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.11736	p.F3912	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	51	0	0	43	7	14	-	-	-	T	34129917	C	T	34129917	2	4	411	1	0	0	0	0	0	0	0	1	13856	912	32	2		2	RYR3	15	34129917	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	141253	34129917	68401475	227	41259										
SPTBN5	0	genome.wustl.edu	37	chr15	42162652	42162652	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tccggctcacacctggacctGggtgaggacttccaagagat	12	12	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	42162652	42162652	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	nonsense	c.5554	p.Q1852*	0.995	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	59	0	0	51	27	34.62	-	-	-	A	42162652	G	A	42162652	4	1	411	1	0	0	0	0	0	1	0	0	15213	1357	47	4	5626	4	SPTBN5	15	42162652	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	8032735	42162652	60368740	228	41260										
CKMT1A	0	genome.wustl.edu	37	chr15	43990929	43990929	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgccacaggcggtgtctttGatatttctaatttggaccga	10	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	43990929	43990929	G	C	SNP	CKMT1A	ENST00000413453	human	ensembl	69_37n	1	known	missense	c.1102	p.D368H	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1A	HGNC	ENSG00000223572	63	0	0	54	22	28.95	-	-	-	C	43990929	G	C	43990929	3	2	411	1	0	0	0	0	1	0	0	0	3479	1290	45	2	1132	2	CKMT1A	15	43990929	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1828277	43990929	58540463	229	41261										
UNC13C	0	genome.wustl.edu	37	chr15	54306762	54306762	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cgttctgaatcagatttttcCaaattgtgtcagtcttactc	6	9	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	54306762	54306762	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.1662	p.S554	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	44	0	0	32	25	43.86	-	-	-	T	54306762	C	T	54306762	2	4	411	1	0	0	0	0	0	0	0	1	17083	581	21	4		4	UNC13C	15	54306762	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	10315833	54306762	48224630	230	41262										
HMG20A	0	genome.wustl.edu	37	chr15	77763314	77763314	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaggaactggaacagtatcaGaaaacagaggcctacaaggt	11	7	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	77763314	77763314	G	A	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	1	known	silent	c.513	p.Q171	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20A	HGNC	ENSG00000140382	53	0	0	50	25	33.33	-	-	-	A	77763314	G	A	77763314	2	1	411	1	0	0	0	0	0	0	0	1	7272	933	33	2		2	HMG20A	15	77763314	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	23456552	77763314	24768078	231	41263										
KIAA1024	0	genome.wustl.edu	37	chr15	79750455	79750455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgacaagcgagggtccgtctGatgacagtgcctctccccgg	13	13	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	79750455	79750455	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	missense	c.1966	p.D656N	0.890	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	35	0	0	34	6	15	-	-	-	A	79750455	G	A	79750455	3	1	411	1	0	0	0	0	1	0	0	0	8257	1290	45	2	1968	2	KIAA1024	15	79750455	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1987141	79750455	22780937	232	41264										
STARD5	0	genome.wustl.edu	37	chr15	81611704	81611704	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggaactgatggtcccatcctCatatctcttgactagcacca	7	13	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	81611704	81611704	C	G	SNP	STARD5	ENST00000302824	human	ensembl	69_37n	-1	known	missense	c.376	p.E126Q	0.976	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD5	HGNC	ENSG00000172345	56	0	0	49	35	41.67	-	-	-	G	81611704	C	G	81611704	3	3	411	1	0	0	0	0	1	0	0	0	15351	835	29	2	277	2	STARD5	15	81611704	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1861249	81611704	20919688	233	41265										
TMC3	0	genome.wustl.edu	37	chr15	81630256	81630256	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcgatgctctggagataataGatgagcatgctaggacagaa	13	6	1	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	81630256	81630256	G	A	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	silent	c.2091	p.I697	1.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	131	0	0	89	57	39.04	-	-	-	A	81630256	G	A	81630256	2	1	411	1	0	0	0	0	0	0	0	1	16081	932	33	2		2	TMC3	15	81630256	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	18552	81630256	20901136	234	41266										
FSD2	0	genome.wustl.edu	37	chr15	83437670	83437670	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctggactttcagcctgggtCagctccacagtgtacgagtc	11	12	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	83437670	83437670	C	G	SNP	FSD2	ENST00000334574	human	ensembl	69_37n	-1	known	silent	c.1515	p.L505	0.949	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD2	HGNC	ENSG00000186628	68	0	0	68	21	23.6	-	-	-	G	83437670	C	G	83437670	2	3	411	1	0	0	0	0	0	0	0	1	6120	813	29	2		2	FSD2	15	83437670	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1807414	83437670	19093722	235	41267										
BLM	0	genome.wustl.edu	37	chr15	91293291	91293291	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgaaaactcatttggaagatGaaagaggtaacaattatttt	8	3	1	4			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	15	91293291	91293291	G	C	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.793	p.E265Q	0.933	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	16	0	0	18	5	21.74	-	-	-	C	91293291	G	C	91293291	3	2	411	1	0	0	0	0	1	0	0	0	1450	1291	45	2	799	2	BLM	15	91293291	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	7855621	91293291	11238101	236	41268										
ADCY9	0	genome.wustl.edu	37	chr16	4164034	4164034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagaactgctcgatggccttGatcatgcccaggcccatctc	9	15	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	4164034	4164034	G	C	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.1410	p.I470M	0.959	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	43	0	0	29	11	27.5	-	-	-	C	4164034	G	C	4164034	3	2	411	1	0	0	0	0	1	0	0	0	301	1280	45	2	2691	2	ADCY9	16	4164034	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		4164034	86190719	237	41269										
MYH11	0	genome.wustl.edu	37	chr16	15831389	15831389	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgcgcctggaggtcagcgatCtgctcgtggaagtcgctggc	16	11	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	15831389	15831389	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.3231	p.Q1077	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	62	0	0	67	11	14.1	-	-	-	T	15831389	C	T	15831389	2	4	411	1	0	0	0	0	0	0	0	1	10103	912	32	2		2	MYH11	16	15831389	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11667355	15831389	74523364	238	41270										
CNOT1	0	genome.wustl.edu	37	chr16	58589354	58589354	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctggggaaaaaaacgatattCttcaaacaagttccttagca	7	8	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	58589354	58589354	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.2692	p.E898K	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	74	0	0	21	14	40	-	-	-	T	58589354	C	T	58589354	3	4	411	1	0	0	0	0	1	0	0	0	3647	922	32	2	4776	2	CNOT1	16	58589354	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	42757965	58589354	31765399	239	41271										
ZDHHC1	0	genome.wustl.edu	37	chr16	67433355	67433355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gctgcagtgcttggagcgagCgctcctgcagggagaggggg	20	9	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	67433355	67433355	C	T	SNP	ZDHHC1	ENST00000348579	human	ensembl	69_37n	-1	known	missense	c.433	p.A145T	0.920	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714	15	0	0	5	5	50	-	-	-	T	67433355	C	T	67433355	3	4	411	1	0	0	0	0	1	0	0	0	17696	768	27	1	1052	1	ZDHHC1	16	67433355	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	8844001	67433355	22921398	240	41272										
DPEP3	0	genome.wustl.edu	37	chr16	68012464	68012464	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgcggtgaatgaggtcaatCtgctccagggcgaggcgcac	15	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	68012464	68012464	C	G	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	missense	c.555	p.Q185H	1.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	65	0	0	39	27	40.91	-	-	-	G	68012464	C	G	68012464	3	3	411	1	0	0	0	0	1	0	0	0	4750	912	32	2	1018	2	DPEP3	16	68012464	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	579109	68012464	22342289	241	41273										
CDH1	0	genome.wustl.edu	37	chr16	68844175	68844175	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttttgatcacggtaaccgatCagaatgacaacaagcccgaa	8	10	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	68844175	68844175	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.763	p.Q255*	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	46	0	0	28	32	53.33	-	-	-	T	68844175	C	T	68844175	4	4	411	1	0	0	0	0	0	1	0	0	3124	827	29	2	785	2	CDH1	16	68844175	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	831711	68844175	21510578	242	41274										
HYDIN	0	genome.wustl.edu	37	chr16	70841561	70841561	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccaggagggcagctcacagtCagcttggtggtgatgggggt	18	8	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	70841561	70841561	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.15285	p.L5095	0.997	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	114	0	0	68	73	51.77	-	-	-	T	70841561	C	T	70841561	2	4	411	1	0	0	0	0	0	0	0	1	7521	813	29	2		2	HYDIN	16	70841561	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1997386	70841561	19513192	243	41275										
ZFHX3	0	genome.wustl.edu	37	chr16	72992023	72992023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttatagtgccagttgcacttGgggcacttgagtgtcttaca	11	8	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	16	72992023	72992023	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.2022	p.P674	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	37	0	0	23	10	30.3	-	-	-	A	72992023	G	A	72992023	2	1	411	1	0	0	0	0	0	0	0	1	17730	1335	47	4		4	ZFHX3	16	72992023	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	2150462	72992023	17362730	244	41276										
NCOR1	0	genome.wustl.edu	37	chr17	16047011	16047011	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cagctcccctctgcccaactCtaaacatgagggagaaatta	7	13	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	16047011	16047011	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	splice_site	c.1083-1	e10-1	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027	38	0	0	11	6	35.29	-	-	-	T	16047011	C	T	16047011	5	4	411	1	0	0	0	0	0	0	1	0	10307	927	32	2	6384	2	NCOR1	17	16047011	Splice_Site	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		16047011	65148199	245	41277										
MYO15A	0	genome.wustl.edu	37	chr17	18059584	18059584	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctggccagtgagaaggtcatCctcttctcagcccgagcgca	11	14	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	18059584	18059584	C	G	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.8535	p.I2845M	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	59	0	0	22	28	56	-	-	-	G	18059584	C	G	18059584	3	3	411	1	0	0	0	0	1	0	0	0	10135	845	30	2	8717	2	MYO15A	17	18059584	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2012573	18059584	63135626	246	41278										
KCNJ12	0	genome.wustl.edu	37	chr17	21319179	21319179	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggctgcatcatcgactccttCatgattggtgccatcatggc	10	12	3	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	21319179	21319179	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	silent	c.525	p.F175	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	60	0	0	36	7	16.28	-	-	-	T	21319179	C	T	21319179	2	4	411	1	0	0	0	0	0	0	0	1	8100	825	29	2		2	KCNJ12	17	21319179	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3259595	21319179	59876031	247	41279										
SLFN12L	0	genome.wustl.edu	37	chr17	33802325	33802325	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgggaaatcagaagagcatCacagaggactttgtggttct	12	7	3	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	33802325	33802325	C	G	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.1477	p.D493H	0.159	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	93	0	0	69	48	41.03	-	-	-	G	33802325	C	G	33802325	3	3	411	1	0	0	0	0	1	0	0	0	14824	826	29	2	386	2	SLFN12L	17	33802325	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	12483146	33802325	47392885	248	41280										
KRT10	0	genome.wustl.edu	37	chr17	38978658	38978658	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aagcagcccccaccagagctCccacggctaaaagagccacc	8	18	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	38978658	38978658	C	T	SNP	KRT10	ENST00000269576	human	ensembl	69_37n	-1	known	silent	c.180	p.G60	0.996	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	65	0	0	59	42	41.58	-	-	-	T	38978658	C	T	38978658	2	4	411	1	0	0	0	0	0	0	0	1	8501	842	30	2		2	KRT10	17	38978658	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	5176333	38978658	42216552	249	41281										
C17orf82	0	genome.wustl.edu	37	chr17	59489466	59489466	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccttcgctgtccttggccccGaggtgcggagcaccggcggt	15	15	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	59489466	59489466	G	T	SNP	C17orf82	ENST00000335108	human	ensembl	69_37n	1	known	nonsense	c.130	p.E44*	0.000	NULL	NULL	-	no_errors	C17orf82	HGNC	ENSG00000187013	26	0	0	27	9	25	-	-	-	T	59489466	G	T	59489466	4	4	411	1	0	0	0	0	0	1	0	0	1903	1059	37	3	132	3	C17orf82	17	59489466	Nonsense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	20510808	59489466	21705744	250	41282										
SUMO2	0	genome.wustl.edu	37	chr17	73177269	73177269	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttaatatgatcgttgttctcAgtcttgactccttcctgtta	6	9	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	73177269	73177269	A	T	SNP	SUMO2	ENST00000420826	human	ensembl	69_37n	-1	known	silent	c.36	p.T12	0.998	NULL	pfam_SUMO,pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO2	HGNC	ENSG00000188612	63	0	0	29	20	40.82	-	-	-	T	73177269	A	T	73177269	2	4	411	1	0	0	0	0	0	0	0	1	15479	175	7	5		5	SUMO2	17	73177269	Silent	SNP	A	TCGA-AR-A2LE-01A-11D-A17W-09	13687803	73177269	8017941	251	41283										
TK1	0	genome.wustl.edu	37	chr17	76171214	76171214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cgtcagcttcaccacgctctCggccagcggcaccaggttca	10	17	4	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	76171214	76171214	C	T	SNP	TK1	ENST00000588734	human	ensembl	69_37n	-1	known	missense	c.430	p.E144K	1.000	pfam_Thymidine_kinase	pfam_Thymidine_kinase	-	no_errors	TK1	HGNC	ENSG00000167900	11	0	0	5	10	66.67	-	-	-	T	76171214	C	T	76171214	3	4	411	1	0	0	0	0	1	0	0	0	16027	893	31	1	282	1	TK1	17	76171214	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	2993945	76171214	5023996	252	41284										
GAA	0	genome.wustl.edu	37	chr17	78087103	78087103	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tacgcactcctcccccacctCtacacactgttccaccaggc	4	21	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	17	78087103	78087103	C	G	SNP	GAA	ENST00000302262	human	ensembl	69_37n	1	known	silent	c.2127	p.L709	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298	26	0	0	20	13	39.39	-	-	-	G	78087103	C	G	78087103	2	3	411	1	0	0	0	0	0	0	0	1	6196	900	32	2		2	GAA	17	78087103	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1915889	78087103	3108107	253	41285										
CABLES1	0	genome.wustl.edu	37	chr18	20837322	20837322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cactacagacggctggtccaGagttcctagcactggccccg	11	15	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	18	20837322	20837322	G	C	SNP	CABLES1	ENST00000256925	human	ensembl	69_37n	1	known	missense	c.1893	p.Q631H	1.000	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508	40	0	0	19	23	54.76	-	-	-	C	20837322	G	C	20837322	3	2	411	1	0	0	0	0	1	0	0	0	2554	933	33	2	1985	2	CABLES1	18	20837322	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09		20837322	57239926	254	41286										
ASXL3	0	genome.wustl.edu	37	chr18	31319214	31319214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctgaaacgtccttttcttctGagagcccagagggagcctgt	11	11	2	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	18	31319214	31319214	G	C	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.1846	p.E616Q	0.993	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	46	0	0	34	24	41.38	-	-	-	C	31319214	G	C	31319214	3	2	411	1	0	0	0	0	1	0	0	0	1072	1291	45	2	1888	2	ASXL3	18	31319214	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	10481892	31319214	46758034	255	41287										
ZNF532	0	genome.wustl.edu	37	chr18	56606717	56606717	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtactctgatgtggctgctCtgaagtctcacattcaaggt	10	9	4	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	18	56606717	56606717	C	G	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	missense	c.2569	p.L857V	0.949	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	118	0	0	125	54	30.17	-	-	-	G	56606717	C	G	56606717	3	3	411	1	0	0	0	0	1	0	0	0	18068	912	32	2	2579	2	ZNF532	18	56606717	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	25287503	56606717	21470531	256	41288										
NFATC1	0	genome.wustl.edu	37	chr18	77193689	77193689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agcccactacgagacggaggGcagccggggggccgtgaagg	19	11	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	18	77193689	77193689	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	missense	c.1337	p.G446D	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	19	0	0	11	11	47.83	-	-	-	A	77193689	G	A	77193689	3	1	411	1	0	0	0	0	1	0	0	0	10433	1203	42	4	1439	4	NFATC1	18	77193689	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	20586972	77193689	883559	257	41289										
POLRMT	0	genome.wustl.edu	37	chr19	618718	618718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cactcaccggctgatgtctcCgttgtgggtgtaggtgatgc	14	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	618718	618718	C	T	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.3355	p.G1119R	0.000	pfam_DNA-dir_Rpol_phage-type	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	48	0	0	33	22	40	-	-	-	T	618718	C	T	618718	3	4	411	1	0	0	0	0	1	0	0	0	12312	661	23	1	406	1	POLRMT	19	618718	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		618718	58510265	258	41290										
LPPR3	0	genome.wustl.edu	37	chr19	814640	814640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggttggggtcagggagggctCcccacgggtcagcaagaggg	20	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	814640	814640	C	G	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	missense	c.709	p.E237Q	0.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	27	0	0	40	15	27.27	-	-	-	G	814640	C	G	814640	3	3	411	1	0	0	0	0	1	0	0	0	8992	864	30	2	1539	2	LPPR3	19	814640	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	195922	814640	58314343	259	41291										
MUC16	0	genome.wustl.edu	37	chr19	8974089	8974089	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tcgccccggattgataaattCtggggtgcatagcctggagc	13	10	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	8974089	8974089	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.42582	p.Q14194H	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	92	0	0	62	50	44.64	-	-	-	A	8974089	C	A	8974089	3	1	411	1	0	0	0	0	1	0	0	0	10045	912	32	2	977	2	MUC16	19	8974089	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	8159449	8974089	50154894	260	41292										
KRI1	0	genome.wustl.edu	37	chr19	10664628	10664628	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	cctgcctgctccctggtgctCaggagctgttcttgggcccc	12	16	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	10664628	10664628	C	T	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	silent	c.2129	p.*710	1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	45	0	0	28	17	37.78	-	-	-	T	10664628	C	T	10664628	2	4	411	1	0	0	0	0	0	0	0	1	8497	837	29	2		2	KRI1	19	10664628	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1690539	10664628	48464355	261	41293										
CARM1	0	genome.wustl.edu	37	chr19	11031600	11031600	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	acgggcagcacctacaacctCagcagcgggatggccgtggc	14	14	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	11031600	11031600	C	T	SNP	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	silent	c.1515	p.L505	1.000	NULL	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	58	0	0	44	21	32.31	-	-	-	T	11031600	C	T	11031600	2	4	411	1	0	0	0	0	0	0	0	1	2680	813	29	2		2	CARM1	19	11031600	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	366972	11031600	48097383	262	41294										
LDLR	0	genome.wustl.edu	37	chr19	11216172	11216172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccaaggggacagtagcccctGctcggccttcgagttccact	11	15	0	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	11216172	11216172	G	A	SNP	LDLR	ENST00000558518	human	ensembl	69_37n	1	known	missense	c.590	p.C197Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164	21	0	0	19	17	47.22	-	-	-	A	11216172	G	A	11216172	3	1	411	1	0	0	0	0	1	0	0	0	8758	1319	46	4	604	4	LDLR	19	11216172	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	184572	11216172	47912811	263	41295										
ZNF681	0	genome.wustl.edu	37	chr19	23928027	23928027	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tttacttaactgtaaattctCatgttcacattttccatatc	2	9	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	23928027	23928027	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	missense	c.325	p.E109K	0.435	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	83	0	0	78	27	25.71	-	-	-	T	23928027	C	T	23928027	3	4	411	1	0	0	0	0	1	0	0	0	18184	835	29	2	1616	2	ZNF681	19	23928027	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	12711855	23928027	35200956	264	41296										
WTIP	0	genome.wustl.edu	37	chr19	34991146	34991146	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccaacctgggcctcttccctCacccactgtgcacgtcactg	7	19	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	34991146	34991146	C	A	SNP	WTIP	ENST00000270288	human	ensembl	69_37n	1	known	nonsense	c.1937	p.S646*	0.008	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	WTIP	HGNC	ENSG00000142279	38	0	0	42	22	34.38	-	-	-	A	34991146	C	A	34991146	4	1	411	1	0	0	0	0	0	1	0	0	17507	838	29	2	1295	2	WTIP	19	34991146	Nonsense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11063119	34991146	24137837	265	41297										
MRPS12	0	genome.wustl.edu	37	chr19	39423191	39423191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgcggctcagcactggccgcGaggccgtctgcttcatccct	12	16	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	39423191	39423191	G	A	SNP	MRPS12	ENST00000308018	human	ensembl	69_37n	1	known	missense	c.268	p.E90K	1.000	pfam_Ribosomal_S12/S23,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_S12/S23,prints_Ribosomal_S12_bac,tigrfam_Ribosomal_S12_bac	pfam_Ribosomal_S12/S23,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_S12/S23,prints_Ribosomal_S12_bac,tigrfam_Ribosomal_S12_bac	-	no_errors	MRPS12	HGNC	ENSG00000128626	20	0	0	12	11	47.83	-	-	-	A	39423191	G	A	39423191	3	1	411	1	0	0	0	0	1	0	0	0	9895	1059	37	1	274	1	MRPS12	19	39423191	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4432045	39423191	19705792	266	41298										
TRAPPC6A	0	genome.wustl.edu	37	chr19	45666465	45666465	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	caggcttaggatttcggaatCaccacctggaacttacctgg	10	11	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	45666465	45666465	C	T	SNP	TRAPPC6A	ENST00000006275	human	ensembl	69_37n	-1	known	silent	c.507	p.V169	1.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	-	no_errors	TRAPPC6A	HGNC	ENSG00000007255	51	0	0	41	35	46.05	-	-	-	T	45666465	C	T	45666465	2	4	411	1	0	0	0	0	0	0	0	1	16559	813	29	2		2	TRAPPC6A	19	45666465	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6243274	45666465	13462518	267	41299										
NPAS1	0	genome.wustl.edu	37	chr19	47548460	47548460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ctcttccagagccggagcctCcgacggaagggaagcaggct	14	13	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	47548460	47548460	C	T	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	1	known	missense	c.1324	p.P442S	0.048	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	13	0	0	9	6	40	-	-	-	T	47548460	C	T	47548460	3	4	411	1	0	0	0	0	1	0	0	0	10634	855	30	2	1366	2	NPAS1	19	47548460	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1881995	47548460	11580523	268	41300										
PPP1R15A	0	genome.wustl.edu	37	chr19	49377172	49377172	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgtcttgcccaggggaggaaGagaatcaagccacggaggat	15	8	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	49377172	49377172	G	A	SNP	PPP1R15A	ENST00000200453	human	ensembl	69_37n	1	known	missense	c.682	p.E228K	0.004	NULL	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074	67	0	0	40	23	36.51	-	-	-	A	49377172	G	A	49377172	3	1	411	1	0	0	0	0	1	0	0	0	12440	943	33	2	684	2	PPP1R15A	19	49377172	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1828712	49377172	9751811	269	41301										
PNKP	0	genome.wustl.edu	37	chr19	50370348	50370348	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttccggtccgtaacctgggtCaggggtcccctgcccaggac	13	15	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	50370348	50370348	C	T	SNP	PNKP	ENST00000322344	human	ensembl	69_37n	-1	known	silent	c.114	p.L38	0.992	superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	25	0	0	10	11	52.38	-	-	-	T	50370348	C	T	50370348	2	4	411	1	0	0	0	0	0	0	0	1	12221	813	29	2		2	PNKP	19	50370348	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	993176	50370348	8758635	270	41302										
PRKCG	0	genome.wustl.edu	37	chr19	54385850	54385850	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaggtggtccacgaagtcaaGagccacaagttcaccgctcg	11	12	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	54385850	54385850	G	A	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	silent	c.102	p.K34	1.000	pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	17	0	0	27	14	34.15	-	-	-	A	54385850	G	A	54385850	2	1	411	1	0	0	0	0	0	0	0	1	12593	933	33	2		2	PRKCG	19	54385850	Silent	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	4015502	54385850	4743133	271	41303										
EPN1	0	genome.wustl.edu	37	chr19	56190110	56190110	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tggggcccatccagctccctCatgtcagagattgccgacct	10	15	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	56190110	56190110	C	A	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	silent	c.450	p.L150	1.000	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	43	0	0	47	10	17.54	-	-	-	A	56190110	C	A	56190110	2	1	411	1	0	0	0	0	0	0	0	1	5222	813	29	2		2	EPN1	19	56190110	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1804260	56190110	2938873	272	41304										
PEG3	0	genome.wustl.edu	37	chr19	57326865	57326865	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctggtgctcagtgaggtcaGagctatgagcaaagcactcc	12	10	3	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	19	57326865	57326865	G	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.2945	p.S982F	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	54	0	0	30	22	42.31	-	-	-	A	57326865	G	A	57326865	3	1	411	1	0	0	0	0	1	0	0	0	11793	942	33	2	1825	2	PEG3	19	57326865	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1136755	57326865	1802118	273	41305										
SIGLEC1	0	genome.wustl.edu	37	chr20	3680054	3680054	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccgcttctgcagctcagtgtCactgcctgtccttccaccac	7	18	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	20	3680054	3680054	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.1581	p.V527	1.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	26	0	0	26	11	29.73	-	-	-	T	3680054	C	T	3680054	2	4	411	1	0	0	0	0	0	0	0	1	14394	813	29	2		2	SIGLEC1	20	3680054	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		3680054	59345466	274	41306										
ZNF337	0	genome.wustl.edu	37	chr20	25657112	25657112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgacttactggtatagcctCgtccacacaccttgcacaga	7	13	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	20	25657112	25657112	C	T	SNP	ZNF337	ENST00000252979	human	ensembl	69_37n	-1	known	missense	c.812	p.R271Q	0.405	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	113	0	0	79	49	38.28	-	-	-	T	25657112	C	T	25657112	3	4	411	1	0	0	0	0	1	0	0	0	17949	884	31	1	1447	1	ZNF337	20	25657112	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	21977058	25657112	37368408	275	41307										
AHCY	0	genome.wustl.edu	37	chr20	32881939	32881939	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcatggtcctgggtggagaaGatgttgcagctggaccactg	16	8	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	20	32881939	32881939	G	C	SNP	AHCY	ENST00000217426	human	ensembl	69_37n	-1	known	missense	c.243	p.I81M	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444	35	0	0	54	20	27.03	-	-	-	C	32881939	G	C	32881939	3	2	411	1	0	0	0	0	1	0	0	0	409	932	33	2	1087	2	AHCY	20	32881939	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	7224827	32881939	30143581	276	41308										
SLC32A1	0	genome.wustl.edu	37	chr20	37353517	37353517	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ttcgcgcattgcgacgacctCgactttgagcaccgccaggg	12	14	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	20	37353517	37353517	C	G	SNP	SLC32A1	ENST00000217420	human	ensembl	69_37n	1	known	silent	c.150	p.L50	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438	9	0	0	6	5	45.45	-	-	-	G	37353517	C	G	37353517	2	3	411	1	0	0	0	0	0	0	0	1	14654	871	31	3		3	SLC32A1	20	37353517	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	4471578	37353517	25672003	277	41309										
TSHZ2	0	genome.wustl.edu	37	chr20	51872689	51872689	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctcaatgaccactatcagtCactggctggccaacgtcaag	8	13	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	20	51872689	51872689	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.2692	p.H898Y	1.000	superfamily_Homeodomain-like,smart_Homeodomain	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	42	0	0	37	12	24.49	-	-	-	T	51872689	C	T	51872689	3	4	411	1	0	0	0	0	1	0	0	0	16720	826	29	2	2698	2	TSHZ2	20	51872689	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	14519172	51872689	11152831	278	41310										
SLC5A3	0	genome.wustl.edu	37	chr21	35467660	35467660	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gggtaacaattggtgcctctCtgtttgtgagcaatattggg	13	6	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	21	35467660	35467660	C	G	SNP	SLC5A3	ENST00000381151	human	ensembl	69_37n	1	known	missense	c.163	p.L55V	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	143	0	0	99	66	39.76	-	-	-	G	35467660	C	G	35467660	3	3	411	1	0	0	0	0	1	0	0	0	14755	912	32	2	165	2	SLC5A3	21	35467660	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		35467660	12662235	279	41311										
BRWD1	0	genome.wustl.edu	37	chr21	40665954	40665954	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tctttaccaaacagtcatctGaaccctaagaaaaaatatat	3	9	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	21	40665954	40665954	G	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.614	p.S205L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	43	0	0	21	16	43.24	-	-	-	A	40665954	G	A	40665954	3	1	411	1	0	0	0	0	1	0	0	0	1533	1294	45	2	6727	2	BRWD1	21	40665954	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5198294	40665954	7463941	280	41312										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45993735	45993735	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggcaggtggacgactgcccaGagagctgctgcgagcccccc	15	15	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	21	45993735	45993735	G	A	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	missense	c.100	p.E34K	1.000	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	60	0	0	34	26	43.33	-	-	-	A	45993735	G	A	45993735	3	1	411	1	0	0	0	0	1	0	0	0	8564	943	33	2	102	2	KRTAP10-4	21	45993735	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	5327781	45993735	2136160	281	41313										
POTEH	0	genome.wustl.edu	37	chr22	16287624	16287624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gagtgtcttcatagcagaatCgtcgtggtctccagaagtgc	12	9	3	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	22	16287624	16287624	C	T	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	missense	c.262	p.D88N	0.011	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	262	0	0	274	53	16.21	-	-	-	T	16287624	C	T	16287624	3	4	411	1	0	0	0	0	1	0	0	0	12341	884	31	1	1415	1	POTEH	22	16287624	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		16287624	35016942	282	41314										
NF2	0	genome.wustl.edu	37	chr22	30074208	30074208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	atgaacccaattccagcaccGttgcctcctgacataccaag	6	15	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	22	30074208	30074208	G	A	SNP	NF2	ENST00000347330	human	ensembl	69_37n	1	known	missense	c.652	p.V218I	0.000	NULL	pfam_FERM_PH-like_C,pfscan_FERM_domain,prints_Ez/rad/moesin,prints_Band_41_fam	-	no_errors	NF2	HGNC	ENSG00000186575	63	0	0	60	48	44.44	-	-	-	A	30074208	G	A	30074208	3	1	411	1	0	0	0	0	1	0	0	0	10429	1132	40	1	1524	1	NF2	22	30074208	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	13786584	30074208	21230358	283	41315										
MYH9	0	genome.wustl.edu	37	chr22	36710252	36710252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aaagtcgatgaagttccactCgatgccctcgcgctggtact	10	12	0	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	22	36710252	36710252	C	T	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.1492	p.E498K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	154	0	0	129	57	30.65	-	-	-	T	36710252	C	T	36710252	3	4	411	1	0	0	0	0	1	0	0	0	10114	893	31	1	4506	1	MYH9	22	36710252	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6636044	36710252	14594314	284	41316										
IL2RB	0	genome.wustl.edu	37	chr22	37539630	37539630	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	catcttggctccagacacagGagatgttggctctcgagttg	12	10	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	22	37539630	37539630	G	C	SNP	IL2RB	ENST00000216223	human	ensembl	69_37n	-1	known	missense	c.134	p.S45C	1.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RB	HGNC	ENSG00000100385	18	0	0	23	12	34.29	-	-	-	C	37539630	G	C	37539630	3	2	411	1	0	0	0	0	1	0	0	0	7741	1174	41	2	1553	2	IL2RB	22	37539630	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	829378	37539630	13764936	285	41317										
MBTPS2	0	genome.wustl.edu	37	chrX	21871530	21871530	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	aatggctttgggatttttctCttcattatttatcctggagc	8	7	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	21871530	21871530	C	G	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	silent	c.579	p.L193	1.000	pfam_Peptidase_M50,prints_Pept_M50_SREBP	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	232	0	0	170	127	42.76	-	-	-	G	21871530	C	G	21871530	2	3	411	1	0	0	0	0	0	0	0	1	9433	900	32	2		2	MBTPS2	23	21871530	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09		21871530	133399030	286	41318										
SAT1	0	genome.wustl.edu	37	chrX	23802069	23802069	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaagtagtgtcggctgtgtaGaaccactgactacacaggcc	12	10	0	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	23802069	23802069	G	A	SNP	SAT1	ENST00000379251	human	ensembl	69_37n	1	known	missense	c.361	p.E121K	0.313	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SAT1	HGNC	ENSG00000130066	35	0	0	25	16	39.02	-	-	-	A	23802069	G	A	23802069	3	1	411	1	0	0	0	0	1	0	0	0	13938	957	33	2		2	SAT1	23	23802069	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	1930539	23802069	131468491	287	41319										
TAB3	0	genome.wustl.edu	37	chrX	30873285	30873285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcatagcagacggattcattCctgtttgcatggaagatggc	12	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	30873285	30873285	C	T	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	missense	c.497	p.G166E	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	94	0	0	74	61	45.19	-	-	-	T	30873285	C	T	30873285	3	4	411	1	0	0	0	0	1	0	0	0	15589	855	30	2	1665	2	TAB3	23	30873285	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	7071216	30873285	124397275	288	41320										
FAM47A	0	genome.wustl.edu	37	chrX	34149897	34149897	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tgttgtcttctcctgggtctCacaacaagcccaagcgtcct	8	14	3	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	34149897	34149897	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.499	p.E167K	0.007	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	87	0	0	76	36	32.14	-	-	-	T	34149897	C	T	34149897	3	4	411	1	0	0	0	0	1	0	0	0	5615	835	29	2	1880	2	FAM47A	23	34149897	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3276612	34149897	121120663	289	41321										
USP9X	0	genome.wustl.edu	37	chrX	41007789	41007789	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gatatcatggacctggctctCagtgcccacataaaaatact	7	11	2	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	41007789	41007789	C	T	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	silent	c.1587	p.L529	0.977	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	122	0	0	99	49	33.11	-	-	-	T	41007789	C	T	41007789	2	4	411	1	0	0	0	0	0	0	0	1	17187	813	29	2		2	USP9X	23	41007789	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	6857892	41007789	114262771	290	41322										
MTMR8	0	genome.wustl.edu	37	chrX	63445041	63445041	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tttagctttgacgttggcctCtgcaccatggtctaggagct	11	10	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	63445041	63445041	C	T	SNP	MTMR8	ENST00000453546	human	ensembl	69_37n	-1	known	missense	c.1615	p.E539K	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myotub-related,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043	48	0	0	33	11	25	-	-	-	T	63445041	C	T	63445041	3	4	411	1	0	0	0	0	1	0	0	0	10021	922	32	2		2	MTMR8	23	63445041	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	22437252	63445041	91825519	291	41323										
ATRX	0	genome.wustl.edu	37	chrX	76938592	76938592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccacagtctctgattgcttaGattttggcaatttattaggc	8	8	1	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	76938592	76938592	G	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.2156	p.S719C	0.104	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	107	0	0	78	30	27.78	-	-	-	C	76938592	G	C	76938592	3	2	411	1	0	0	0	0	1	0	0	0	1212	942	33	2	5430	2	ATRX	23	76938592	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	13493551	76938592	78331968	292	41324										
DIAPH2	0	genome.wustl.edu	37	chrX	96213049	96213049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	caccaccccttggaggagttCctcctcccccaggaatatca	7	17	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	96213049	96213049	C	T	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.1837	p.P613S	0.170	superfamily_FH2_actin-bd	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	74	0	0	46	29	38.67	-	-	-	T	96213049	C	T	96213049	3	4	411	1	0	0	0	0	1	0	0	0	4555	855	30	2	1899	2	DIAPH2	23	96213049	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	19274457	96213049	59057511	293	41325										
PCDH19	0	genome.wustl.edu	37	chrX	99663206	99663206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	tccagctcgatctgtgctgcCgggaaactgggcgcattgtc	13	12	1	0			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	99663206	99663206	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	silent	c.390	p.P130	0.016	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	71	0	0	66	13	16.46	-	-	-	T	99663206	C	T	99663206	2	4	411	1	0	0	0	0	0	0	0	1	11587	639	23	1		1	PCDH19	23	99663206	Silent	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	3450157	99663206	55607354	294	41326										
TNMD	0	genome.wustl.edu	37	chrX	99840058	99840058	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	attgtgaagactgtcacattCtaaatgtaagttgattcata	7	5	3	3			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	99840058	99840058	C	G	SNP	TNMD	ENST00000373031	human	ensembl	69_37n	1	known	missense	c.43	p.L15V	1.000	NULL	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005	69	0	0	58	43	42.57	-	-	-	G	99840058	C	G	99840058	3	3	411	1	0	0	0	0	1	0	0	0	16417	912	32	2	45	2	TNMD	23	99840058	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	176852	99840058	55430502	295	41327										
CENPI	0	genome.wustl.edu	37	chrX	100387249	100387249	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ggatggcctttgttgtcggtCacagttccttcagcttgtga	12	9	2	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	100387249	100387249	C	T	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	missense	c.1358	p.S453L	0.884	pfam_Centromere_CenpI	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	121	0	0	98	44	30.99	-	-	-	T	100387249	C	T	100387249	3	4	411	1	0	0	0	0	1	0	0	0	3262	838	29	2	1404	2	CENPI	23	100387249	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	547191	100387249	54883311	296	41328										
AMOT	0	genome.wustl.edu	37	chrX	112058767	112058767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gcatagctgaataggcttctCctggctgctgctgtggctgc	13	11	1	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	112058767	112058767	C	T	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1211	p.G404E	1.000	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	64	0	0	56	19	25.33	-	-	-	T	112058767	C	T	112058767	3	4	411	1	0	0	0	0	1	0	0	0	582	855	30	2	2083	2	AMOT	23	112058767	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	11671518	112058767	43211793	297	41329										
SLC25A43	0	genome.wustl.edu	37	chrX	118586864	118586864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	gaattatgtttagcacctttGagttctgcaagagaatctgt	9	6	2	2			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	118586864	118586864	G	C	SNP	SLC25A43	ENST00000217909	human	ensembl	69_37n	1	known	missense	c.862	p.E288Q	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713	70	0	0	61	10	14.08	-	-	-	C	118586864	G	C	118586864	3	2	411	1	0	0	0	0	1	0	0	0	14597	1291	45	2	880	2	SLC25A43	23	118586864	Missense_Mutation	SNP	G	TCGA-AR-A2LE-01A-11D-A17W-09	6528097	118586864	36683696	298	41330										
MAGEA12	0	genome.wustl.edu	37	chrX	151899872	151899872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	agactcactcttccccctctCtaaaagcccattcatgcagg	5	16	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	151899872	151899872	C	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.929	p.R310T	0.054	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	126	0	0	84	67	44.37	-	-	-	G	151899872	C	G	151899872	3	3	411	1	0	0	0	0	1	0	0	0	9233	913	32	2	19	2	MAGEA12	23	151899872	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	33313008	151899872	3370688	299	41331										
IRAK1	0	genome.wustl.edu	37	chrX	153281522	153281522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.613333333333333	184	9.10993116936408e-80	4.56829381390633	5.3584492846256	4.19696392056285	6.35308770494203e-06	0.000443808555388093	144	ccgtgcgtcttcacagccctCtgaccagccaaggtctctag	9	16	4	1			TCGA-AR-A2LE-01A-11D-A17W-09	TCGA-AR-A2LE-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2684cf0d-9cc7-45f3-86bd-96f9bb17d749	f7ffd8c1-3b0b-477c-97c5-467710171bbf	X	153281522	153281522	C	G	SNP	IRAK1	ENST00000369980	human	ensembl	69_37n	-1	known	missense	c.1263	p.Q421H	0.270	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	34	0	0	42	31	42.47	-	-	-	G	153281522	C	G	153281522	3	3	411	1	0	0	0	0	1	0	0	0	7875	912	32	2	895	2	IRAK1	23	153281522	Missense_Mutation	SNP	C	TCGA-AR-A2LE-01A-11D-A17W-09	1381650	153281522	1989038	300	41332										
OR6K6	0	genome.wustl.edu	37	chr1	158725034	158725034	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	atcacagaaagctgtgtcctGacagcaatggccattgacag	10	10	1	3			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	1	158725034	158725034	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	silent	c.429	p.L143	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	31	0	0	43	7	14	-	-	-	A	158725034	G	A	158725034	2	1	412	1	0	0	0	0	0	0	0	1	11277	1277	45	2		2	OR6K6	1	158725034	Silent	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		158725034	90525587	1	41333										
ZNF648	0	genome.wustl.edu	37	chr1	182026630	182026630	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	cttttgtgcgcacagagataCtttccattgctggggaagct	11	9	0	1			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	1	182026630	182026630	C	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.516	p.K172N	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	43	0	0	31	4	11.43	-	-	-	A	182026630	C	A	182026630	3	1	412	1	0	0	0	0	1	0	0	0	18159	564	20	4	1194	4	ZNF648	1	182026630	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09	23301596	182026630	67223991	2	41334										
PCDHB2	0	genome.wustl.edu	37	chr5	140476634	140476634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	tgtcccagagctaccagtacGaggtgtgtctgactggaggc	14	10	1	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	5	140476634	140476634	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.2260	p.E754K	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	62	0	0	65	8	10.96	-	-	-	A	140476634	G	A	140476634	3	1	412	1	0	0	0	0	1	0	0	0	11615	1059	37	1	2262	1	PCDHB2	5	140476634	Missense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		140476634	40438626	3	41335										
BAG2	0	genome.wustl.edu	37	chr6	57048818	57048818	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ggccagttgatcagaagtttCaatccatagtaattggctgt	10	7	2	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	6	57048818	57048818	C	T	SNP	BAG2	ENST00000370693	human	ensembl	69_37n	1	known	nonsense	c.466	p.Q156*	1.000	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG2	HGNC	ENSG00000112208	39	0	0	45	5	10	-	-	-	T	57048818	C	T	57048818	4	4	412	1	0	0	0	0	0	1	0	0	1291	827	29	2	476	2	BAG2	6	57048818	Nonsense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09		57048818	114066249	4	41336										
RRAGD	0	genome.wustl.edu	37	chr6	90097118	90097118	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	tcctgggaagtcccaaatctGaaaattgacaaaggagctgt	10	8	1	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	6	90097118	90097118	G	A	SNP	RRAGD	ENST00000369415	human	ensembl	69_37n	-1	known	nonsense	c.340	p.Q114*	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGD	HGNC	ENSG00000025039	46	0	0	40	5	11.11	-	-	-	A	90097118	G	A	90097118	4	1	412	1	0	0	0	0	0	1	0	0	13761	1299	45	2	886	2	RRAGD	6	90097118	Nonsense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09	33048300	90097118	81017949	5	41337										
CARD11	0	genome.wustl.edu	37	chr7	2962378	2962378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ggacactctgcctctcgcctCggatgcagccttctagctgg	11	15	3	0			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	7	2962378	2962378	C	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.2159	p.R720Q	0.027	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	29	0	0	40	6	13.04	-	-	-	T	2962378	C	T	2962378	3	4	412	1	0	0	0	0	1	0	0	0	2670	884	31	1	1341	1	CARD11	7	2962378	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09		2962378	156176285	6	41338										
WBSCR17	0	genome.wustl.edu	37	chr7	70885903	70885903	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ctatgtttcagggctgagccGgttctatcccgcatccagga	11	12	2	1			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	7	70885903	70885903	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	silent	c.774	p.P258	0.086	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	41	0	0	47	6	11.32	-	-	-	T	70885903	G	T	70885903	2	4	412	1	0	0	0	0	0	0	0	1	17361	1103	39	3		3	WBSCR17	7	70885903	Silent	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09	67923525	70885903	88252760	7	41339										
MYOZ1	0	genome.wustl.edu	37	chr10	75391782	75391782	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	gccagggaataggggttcgaTtgaaagaaggcctgttggag	17	5	0	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	10	75391782	75391782	T	A	SNP	MYOZ1	ENST00000359322	human	ensembl	69_37n	-1	known	missense	c.806	p.N269I	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791	55	0	0	85	13	13.27	-	-	-	A	75391782	T	A	75391782	3	1	412	1	0	0	0	0	1	0	0	0	10167	1493	52	5	97	5	MYOZ1	10	75391782	Missense_Mutation	SNP	T	TCGA-AR-A2LH-01A-31D-A18P-09		75391782	60142965	8	41340										
CHRNA10	0	genome.wustl.edu	37	chr11	3691096	3691096	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ggtctgtgtctgccacaggtCtcagggcacttgtgtagttg	14	9	3	0			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	11	3691096	3691096	C	T	SNP	CHRNA10	ENST00000250699	human	ensembl	69_37n	-1	known	missense	c.137	p.R46K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749	59	0	0	85	13	13.27	-	-	-	T	3691096	C	T	3691096	3	4	412	1	0	0	0	0	1	0	0	0	3411	913	32	2	1231	2	CHRNA10	11	3691096	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09		3691096	131315420	9	41341										
STK33	0	genome.wustl.edu	37	chr11	8496364	8496364	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ctggaggaacccttgttttgCtggaacatacacaaagtaca	9	9	0	0			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	11	8496364	8496364	C	T	SNP	STK33	ENST00000534493	human	ensembl	69_37n	-1	putative	splice_site	c.1-1	e1-1	0.008	-	-	-	no_errors	STK33	HGNC	ENSG00000130413	56	0	0	64	14	17.95	-	-	-	T	8496364	C	T	8496364	5	4	412	1	0	0	0	0	0	0	1	0	15391	797	28	4	1503	4	STK33	11	8496364	Splice_Site	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09	4805268	8496364	126510152	10	41342										
TRPM1	0	genome.wustl.edu	37	chr15	31339418	31339418	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ctccagcacgagcccgatgtCtatgaggctgatgtggtaat	12	10	1	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	31339418	31339418	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.1711	p.D571N	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	35	0	0	49	12	19.67	-	-	-	T	31339418	C	T	31339418	3	4	412	1	0	0	0	0	1	0	0	0	16681	913	32	2	3273	2	TRPM1	15	31339418	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09		31339418	71191974	11	41343										
SLC12A6	0	genome.wustl.edu	37	chr15	34553129	34553129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ttttctccaaaatattacctCaaagagtgccaaatttttat	3	8	2	1			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	34553129	34553129	C	T	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.382	p.E128K	1.000	prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	37	0	0	42	6	12.5	-	-	-	T	34553129	C	T	34553129	3	4	412	1	0	0	0	0	1	0	0	0	14476	835	29	2	3135	2	SLC12A6	15	34553129	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09	3213711	34553129	67978263	12	41344										
DPP8	0	genome.wustl.edu	37	chr15	65766607	65766607	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	gtaattgctatctcctctttGataggacacttgaaatcacc	6	10	3	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	65766607	65766607	G	C	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.1524	p.I508M	0.998	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	30	0	0	48	7	12.73	-	-	-	C	65766607	G	C	65766607	3	2	412	1	0	0	0	0	1	0	0	0	4767	1280	45	2	1208	2	DPP8	15	65766607	Missense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09	31213478	65766607	36764785	13	41345										
MYH4	0	genome.wustl.edu	37	chr17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ctttagctgaaaagtaactcGggacttctctagcagatctg	9	9	2	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	17	10366488	10366488	G	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	nonsense	c.823	p.R275*	0.146	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	48	0	0	37	7	15.91	-	-	-	A	10366488	G	A	10366488	4	1	412	1	0	0	0	0	0	1	0	0	10109	1124	39	1	5120	1	MYH4	17	10366488	Nonsense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		10366488	70828722	14	41346										
KRTAP4-4	0	genome.wustl.edu	37	chr17	39316500	39316500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	cacctggacacacagcagctGgggcggcagcaggtggttct	15	12	1	0			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	17	39316500	39316500	G	A	SNP	KRTAP4-4	ENST00000390661	human	ensembl	69_37n	-1	known	silent	c.444	p.P148	0.986	NULL	NULL	-	no_errors	KRTAP4-4	HGNC	ENSG00000171396	49	0	0	67	9	11.84	-	-	-	A	39316500	G	A	39316500	2	1	412	1	0	0	0	0	0	0	0	1	8607	1335	47	4		4	KRTAP4-4	17	39316500	Silent	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09	28950012	39316500	41878710	15	41347										
MIER2	0	genome.wustl.edu	37	chr19	336103	336103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ctgctgttgtctgcaagcccGgctcccctgggcacaggctg	13	15	1	0			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	19	336103	336103	G	T	SNP	MIER2	ENST00000264819	human	ensembl	69_37n	-1	known	missense	c.80	p.P27Q	0.879	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556	36	0	0	29	6	17.14	-	-	-	T	336103	G	T	336103	3	4	412	1	0	0	0	0	1	0	0	0	9652	1116	39	3	1609	3	MIER2	19	336103	Missense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		336103	58792880	16	41348										
SEC23B	0	genome.wustl.edu	37	chr20	18526630	18526630	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	ttggacagtataacaaagaaGaccccacttcttttaggtta	7	8	1	2			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	20	18526630	18526630	G	C	SNP	SEC23B	ENST00000262544	human	ensembl	69_37n	1	known	missense	c.1696	p.D566H	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310	80	0	0	86	10	10.42	-	-	-	C	18526630	G	C	18526630	3	2	412	1	0	0	0	0	1	0	0	0	14080	942	33	2	1750	2	SEC23B	20	18526630	Missense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		18526630	44498890	17	41349										
PPM1F	0	genome.wustl.edu	37	chr22	22277806	22277806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	cagcgcccgggaagctgcatCggcctccccagacacgtagg	13	16	0	1			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	22	22277806	22277806	C	T	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.1024	p.D342N	0.998	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	22	0	0	24	5	17.24	-	-	-	T	22277806	C	T	22277806	3	4	412	1	0	0	0	0	1	0	0	0	12416	884	31	1	344	1	PPM1F	22	22277806	Missense_Mutation	SNP	C	TCGA-AR-A2LH-01A-31D-A18P-09		22277806	29026760	18	41350										
PLAC1	0	genome.wustl.edu	37	chrX	133700448	133700448	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473684210526316	9	0.000320197086986188	4.68235294117647	7.80392156862745	3.90196078431373	0.346935417523653	0.950412796697626	7	gctgtagataaccatgtcctGagagacagctttggccctga	11	10	0	4			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	X	133700448	133700448	G	C	SNP	PLAC1	ENST00000359237	human	ensembl	69_37n	-1	known	missense	c.265	p.Q89E	0.000	NULL	NULL	-	no_errors	PLAC1	HGNC	ENSG00000170965	67	0	0	81	10	10.99	-	-	-	C	133700448	G	C	133700448	3	2	412	1	0	0	0	0	1	0	0	0	12086	1299	45	2	377	2	PLAC1	23	133700448	Missense_Mutation	SNP	G	TCGA-AR-A2LH-01A-31D-A18P-09		133700448	21570112	19	41351										
PUM1	0	genome.wustl.edu	37	chr1	31478843	31478843	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	atggaaactctgaccaggtcTtctctgcaccatgattggct	9	11	3	2			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	1	31478843	31478843	T	C	SNP	PUM1	ENST00000426105	human	ensembl	69_37n	-1	known	missense	c.577	p.R193G	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	19	0	0	16	4	20	-	-	-	C	31478843	T	C	31478843	3	2	413	1	0	0	0	0	1	0	0	0	12908	1617	56	5	3061	5	PUM1	1	31478843	Missense_Mutation	SNP	T	TCGA-AR-A2LJ-01A-12D-A19Y-09		31478843	217771778	1	41352										
CD47	0	genome.wustl.edu	37	chr3	107770938	107770938	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	aaaggtgccagagatgttaaTgaaagagttccagctctgac	11	7	1	4			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	107770938	107770938	T	A	SNP	CD47	ENST00000471694	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.083	-	-	-	no_errors	CD47	HGNC	ENSG00000196776	9	0	0	10	6	37.5	-	-	-	A	107770938	T	A	107770938	1	1	413	0	1	0	0	0	0	0	0	0	3048	1479	51	5		5	CD47	3	107770938	RNA	SNP	T	TCGA-AR-A2LJ-01A-12D-A19Y-09		107770938	90251492	2	41353										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	21	0	0	19	8	29.63	-	-	-	G	178952085	A	G	178952085	3	3	413	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A2LJ-01A-12D-A19Y-09	71181147	178952085	19070345	3	41354										
KLHL6	0	genome.wustl.edu	37	chr3	183225934	183225934	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	atgagaggatctgcttccacCgtctccacaaagtaccacgg	9	13	2	1			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	183225934	183225934	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.822	p.T274	0.850	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	51	0	0	36	4	10	-	-	-	T	183225934	C	T	183225934	2	4	413	1	0	0	0	0	0	0	0	1	8446	639	23	1		1	KLHL6	3	183225934	Silent	SNP	C	TCGA-AR-A2LJ-01A-12D-A19Y-09	4273849	183225934	14796496	4	41355										
MUC4	0	genome.wustl.edu	37	chr3	195506303	195506303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	tgaggaagcattggtgacagGaagaggggtggtgtcacctg	18	5	1	3			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	195506303	195506303	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12148	p.P4050T	0.009	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	25	0	0	16	5	23.81	-	-	-	T	195506303	G	T	195506303	3	4	413	1	0	0	0	0	1	0	0	0	10050	1174	41	2		2	MUC4	3	195506303	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09	12280369	195506303	2516127	5	41356										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720013	140720013	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	tcatgtaacttactctttcgCggaggacactgttcaggggg	12	9	3	0			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	5	140720013	140720013	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.1475	p.A492V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	47	0	0	29	5	14.71	-	-	-	T	140720013	C	T	140720013	3	4	413	1	0	0	0	0	1	0	0	0	11627	768	27	1	1477	1	PCDHGA2	5	140720013	Missense_Mutation	SNP	C	TCGA-AR-A2LJ-01A-12D-A19Y-09		140720013	40195247	6	41357										
DIP2C	0	genome.wustl.edu	37	chr10	373069	373069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	gcgatccgaggcctctcttcCgccacaaccacgcaggtcct	9	18	1	0			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	10	373069	373069	C	T	SNP	DIP2C	ENST00000434695	human	ensembl	69_37n	-1	known	missense	c.217	p.G73R	0.088	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DIP2C	HGNC	ENSG00000151240	13	0	0	11	5	31.25	-	-	-	T	373069	C	T	373069	3	4	413	1	0	0	0	0	1	0	0	0	4565	639	23	1	897	1	DIP2C	10	373069	Missense_Mutation	SNP	C	TCGA-AR-A2LJ-01A-12D-A19Y-09		373069	135161678	7	41358										
NOP2	0	genome.wustl.edu	37	chr12	6677049	6677049	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	cgggcctttcggcctggcccCcgcttctccttcgtagggtc	12	17	1	0			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	12	6677049	6677049	C	T	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	silent	c.36	p.R12	0.960	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	34	0	0	26	4	13.33	-	-	-	T	6677049	C	T	6677049	2	4	413	1	0	0	0	0	0	0	0	1	10610	610	22	4		4	NOP2	12	6677049	Silent	SNP	C	TCGA-AR-A2LJ-01A-12D-A19Y-09		6677049	127174846	8	41359										
LPCAT3	0	genome.wustl.edu	37	chr12	7087848	7087848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	gcagcggaaccagaaggggtGgttcttgagggaagaaagca	17	6	1	3			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	12	7087848	7087848	G	T	SNP	LPCAT3	ENST00000261407	human	ensembl	69_37n	-1	known	missense	c.790	p.H264N	0.026	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684	23	0	0	18	3	14.29	-	-	-	T	7087848	G	T	7087848	3	4	413	1	0	0	0	0	1	0	0	0	8978	1348	47	4	693	4	LPCAT3	12	7087848	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09	410799	7087848	126764047	9	41360										
CDH1	0	genome.wustl.edu	37	chr16	68842432	68842432	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	ttcctcccatcagctgcccaGaaaatgaaaaaggcccattt	6	13	1	2			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	16	68842432	68842432	G	C	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.493	p.E165Q	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	56	0	0	25	6	19.35	-	-	-	C	68842432	G	C	68842432	3	2	413	1	0	0	0	0	1	0	0	0	3124	943	33	2	507	2	CDH1	16	68842432	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09		68842432	21512321	10	41361										
NKPD1	0	genome.wustl.edu	37	chr19	45662050	45662050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	gccactcctggccatggctgGtgccgtggtgggtaaggtgg	18	10	0	0			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	19	45662050	45662050	G	T	SNP	NKPD1	ENST00000317951	human	ensembl	69_37n	-1	known	missense	c.400	p.P134T	0.001	NULL	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846	35	0	0	21	4	16	-	-	-	T	45662050	G	T	45662050	3	4	413	1	0	0	0	0	1	0	0	0	10518	1261	44	4	2110	4	NKPD1	19	45662050	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09		45662050	13466933	11	41362										
SYCP2	0	genome.wustl.edu	37	chr20	58491609	58491609	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	aatgcgaggtacgaaactttCcactacttgttttttacctg	7	9	0	0			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	58491609	58491609	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	nonsense	c.445	p.E149*	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	35	0	0	20	6	23.08	-	-	-	A	58491609	C	A	58491609	4	1	413	1	0	0	0	0	0	1	0	0	15524	864	30	2	4299	2	SYCP2	20	58491609	Nonsense_Mutation	SNP	C	TCGA-AR-A2LJ-01A-12D-A19Y-09		58491609	4533911	12	41363										
CDH4	0	genome.wustl.edu	37	chr20	60485520	60485520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	accgcgtggagaccgtggtcGcaaacctcacggtgatggac	14	12	1	2			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	60485520	60485520	G	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.1231	p.A411T	0.978	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	20	0	0	16	5	23.81	-	-	-	A	60485520	G	A	60485520	3	1	413	1	0	0	0	0	1	0	0	0	3141	1087	38	1	1265	1	CDH4	20	60485520	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09	1993911	60485520	2540000	13	41364										
PRPF6	0	genome.wustl.edu	37	chr20	62626323	62626323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	1	0.895731888858671	1.16917293233083	8.18421052631579	0	1	1	0	tgagcatccccgaggttggcGatgccagaaataaacgtcag	12	10	1	2			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	62626323	62626323	G	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.493	p.D165N	1.000	pfam_PRP1_N	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	34	0	0	24	6	20	-	-	-	A	62626323	G	A	62626323	3	1	413	1	0	0	0	0	1	0	0	0	12655	1058	37	1	511	1	PRPF6	20	62626323	Missense_Mutation	SNP	G	TCGA-AR-A2LJ-01A-12D-A19Y-09	2140803	62626323	399197	14	41365										
RHOC	0	genome.wustl.edu	37	chr1	113244320	113244320	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	cgccatgtcccggccttcctCagaccgaacgggctcctgag	11	17	1	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	1	113244320	113244320	C	T	SNP	RHOC	ENST00000285735	human	ensembl	69_37n	-1	known	missense	c.424	p.E142K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOC	HGNC	ENSG00000155366	58	0	0	21	22	51.16	-	-	-	T	113244320	C	T	113244320	3	4	414	1	0	0	0	0	1	0	0	0	13420	835	29	2	161	2	RHOC	1	113244320	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09		113244320	136006301	1	41366										
HHIPL2	0	genome.wustl.edu	37	chr1	222717378	222717378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	accgtcccttccatgagactCctggaggccgcggtcattgg	12	14	1	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	1	222717378	222717378	C	T	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	missense	c.475	p.E159K	0.022	pfam_Folate_rcpt-like,superfamily_Saposin-like	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	56	0	0	51	55	51.89	-	-	-	T	222717378	C	T	222717378	3	4	414	1	0	0	0	0	1	0	0	0	7145	864	30	2	1731	2	HHIPL2	1	222717378	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	109473058	222717378	26533243	2	41367										
ADAM17	0	genome.wustl.edu	37	chr2	9634772	9634772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	acataaatactcacattcatGtcacaaaatcctactgtaca	2	11	3	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	2	9634772	9634772	G	A	SNP	ADAM17	ENST00000310823	human	ensembl	69_37n	-1	known	silent	c.1908	p.D636	1.000	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694	113	0	0	47	32	40.51	-	-	-	A	9634772	G	A	9634772	2	1	414	1	0	0	0	0	0	0	0	1	238	1368	48	4		4	ADAM17	2	9634772	Silent	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		9634772	233564601	3	41368										
TLX2	0	genome.wustl.edu	37	chr2	74742786	74742786	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tctcgcccttctctgggacgCgccgcataggccacccctac	9	19	2	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	2	74742786	74742786	C	T	SNP	TLX2	ENST00000233638	human	ensembl	69_37n	1	known	missense	c.427	p.R143C	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	TLX2	HGNC	ENSG00000115297	44	0	0	31	8	20.51	-	-	-	T	74742786	C	T	74742786	3	4	414	1	0	0	0	0	1	0	0	0	16056	768	27	1	433	1	TLX2	2	74742786	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	65108014	74742786	168456587	4	41369										
DPP4	0	genome.wustl.edu	37	chr2	162879282	162879282	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tactcttccaacccagccagTagtactcatttcaatgtgtt	5	12	3	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	2	162879282	162879282	T	C	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.1051	p.T351A	0.790	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	231	0	0	93	59	38.82	-	-	-	C	162879282	T	C	162879282	3	2	414	1	0	0	0	0	1	0	0	0	4764	1638	57	5	1309	5	DPP4	2	162879282	Missense_Mutation	SNP	T	TCGA-AR-A2LK-01A-11D-A17W-09	88136496	162879282	80320091	5	41370										
CNTN3	0	genome.wustl.edu	37	chr3	74535758	74535758	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	cgatgttccatactcatatcAatatcacttccattcagctg	4	12	4	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	3	74535758	74535758	A	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	missense	c.207	p.I69M	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	83	0	0	82	13	13.68	-	-	-	C	74535758	A	C	74535758	3	2	414	1	0	0	0	0	1	0	0	0	3672	126	5	5	2959	5	CNTN3	3	74535758	Missense_Mutation	SNP	A	TCGA-AR-A2LK-01A-11D-A17W-09		74535758	123486672	6	41371										
OR5AC2	0	genome.wustl.edu	37	chr3	97806718	97806718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ctgaaaaaaaagtctgaaaaGggcagaagcaaagccttctc	9	8	2	3			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	3	97806718	97806718	G	T	SNP	OR5AC2	ENST00000358642	human	ensembl	69_37n	1	known	missense	c.702	p.K234N	0.065	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578	54	0	0	38	20	34.48	-	-	-	T	97806718	G	T	97806718	3	4	414	1	0	0	0	0	1	0	0	0	11214	991	35	4	704	4	OR5AC2	3	97806718	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	23270960	97806718	100215712	7	41372										
C3orf15	0	genome.wustl.edu	37	chr3	119434580	119434580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gagctcttgaccctggctacGcttacttggggtgagttggt	14	9	1	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	3	119434580	119434580	G	A	SNP	C3orf15	ENST00000273390	human	ensembl	69_37n	1	known	silent	c.672	p.T224	0.998	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	C3orf15	HGNC	ENSG00000183833	88	0	0	16	81	83.51	-	-	-	A	119434580	G	A	119434580	2	1	414	1	0	0	0	0	0	0	0	1	2229	1074	38	1		1	C3orf15	3	119434580	Silent	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	21627862	119434580	78587850	8	41373										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0	15	74	83.15	-	-	-	G	178952085	A	G	178952085	3	3	414	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A2LK-01A-11D-A17W-09	59517505	178952085	19070345	9	41374										
LARP1	0	genome.wustl.edu	37	chr5	154172349	154172349	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tgccagcgaggcgggcagaaGaagaaaggtgagtgactggg	19	6	0	5			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	5	154172349	154172349	G	A	SNP	LARP1	ENST00000517616	human	ensembl	69_37n	1	putative	missense	c.439	p.E147K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	LARP1	HGNC	ENSG00000155506	90	0	0	82	57	41.01	-	-	-	A	154172349	G	A	154172349	3	1	414	1	0	0	0	0	1	0	0	0	8682	933	33	2	515	2	LARP1	5	154172349	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		154172349	26742911	10	41375										
IL22RA2	0	genome.wustl.edu	37	chr6	137477933	137477933	+	Frame_Shift_Del	DEL	T	T	-													0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gcctgggaagttacaagaaaTgtgctgccagcatccacttg							TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	6	137477933	137477933	T	-	DEL	IL22RA2	ENST00000296980	human	ensembl	69_37n	-1	known	frame_shift_del	c.256	p.I86fs	0.002	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL22RA2	HGNC	ENSG00000164485	115	0	0	104	26	19.55	-	-	-	-	137477933	T	-	137477933	7	5	414	1	0	1	0	1	0	0	0	0	7728	1464	51	0	551	0	IL22RA2	6	137477933	Frame_Shift_Del	DEL	T	TCGA-AR-A2LK-01A-11D-A17W-09		137477933	33637134	11	41376										
SYNE1	0	genome.wustl.edu	37	chr6	152668216	152668216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tctgagctgtgctgcagatcGctgagtagctgtcctttgtg	13	9	1	3			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	6	152668216	152668216	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.12056	p.A4019V	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	159	0	0	146	33	18.44	-	-	-	A	152668216	G	A	152668216	3	1	414	1	0	0	0	0	1	0	0	0	15537	1087	38	1	14706	1	SYNE1	6	152668216	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	15190283	152668216	18446851	12	41377										
C7orf57	0	genome.wustl.edu	37	chr7	48092459	48092459	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tccccacgagacctggaaggTccccaggatgcagccaggct	12	15	0	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	7	48092459	48092459	T	A	SNP	C7orf57	ENST00000348904	human	ensembl	69_37n	1	known	silent	c.768	p.G256	0.000	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746	35	0	0	30	9	23.08	-	-	-	A	48092459	T	A	48092459	2	1	414	1	0	0	0	0	0	0	0	1	2427	1654	58	5		5	C7orf57	7	48092459	Silent	SNP	T	TCGA-AR-A2LK-01A-11D-A17W-09		48092459	111046204	13	41378										
ZSCAN21	0	genome.wustl.edu	37	chr7	99654807	99654807	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	accatgatacccctggacccCgagaggccctgagccaactc	9	17	0	3			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	7	99654807	99654807	C	T	SNP	ZSCAN21	ENST00000292450	human	ensembl	69_37n	1	known	nonsense	c.178	p.R60*	0.985	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	36	0	0	28	11	28.21	-	-	-	T	99654807	C	T	99654807	4	4	414	1	0	0	0	0	0	1	0	0	18325	644	23	1	180	1	ZSCAN21	7	99654807	Nonsense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	51562348	99654807	59483856	14	41379										
DOK2	0	genome.wustl.edu	37	chr8	21769814	21769814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ggccgccaggaggtacaggcGctccttggtctccaggaaga	15	12	1	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	8	21769814	21769814	G	A	SNP	DOK2	ENST00000276420	human	ensembl	69_37n	-1	known	missense	c.271	p.R91C	0.998	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443	27	0	0	5	12	70.59	-	-	-	A	21769814	G	A	21769814	3	1	414	1	0	0	0	0	1	0	0	0	4732	1087	38	1	983	1	DOK2	8	21769814	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		21769814	124594208	15	41380										
FAM83H	0	genome.wustl.edu	37	chr8	144811162	144811162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gctcccactcatcaccacggCacagtccaccagcaggaact	7	18	2	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	8	144811162	144811162	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	69_37n	-1	known	missense	c.712	p.A238T	0.991	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921	39	0	0	24	53	68.83	-	-	-	T	144811162	C	T	144811162	3	4	414	1	0	0	0	0	1	0	0	0	5685	710	25	4	2835	4	FAM83H	8	144811162	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	123041348	144811162	1552860	16	41381										
STX17	0	genome.wustl.edu	37	chr9	102730740	102730740	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	caaaatacaagctggcagctCtgcctgtggcaggtgcactc	11	12	1	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	9	102730740	102730740	C	T	SNP	STX17	ENST00000259400	human	ensembl	69_37n	1	known	silent	c.694	p.L232	1.000	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874	60	0	0	37	26	41.27	-	-	-	T	102730740	C	T	102730740	2	4	414	1	0	0	0	0	0	0	0	1	15431	912	32	2		2	STX17	9	102730740	Silent	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09		102730740	38482691	17	41382										
NTNG2	0	genome.wustl.edu	37	chr9	135073544	135073544	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	aagaccgtggagctgaccgaCgacgtggtgatgaccttcga	14	10	0	4			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	9	135073544	135073544	C	T	SNP	NTNG2	ENST00000360670	human	ensembl	69_37n	1	known	silent	c.405	p.D135	0.988	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	31	0	0	25	4	13.79	-	-	-	T	135073544	C	T	135073544	2	4	414	1	0	0	0	0	0	0	0	1	10778	535	19	1		1	NTNG2	9	135073544	Silent	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	32342804	135073544	6139887	18	41383										
NOX4	0	genome.wustl.edu	37	chr11	89075271	89075271	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ttgagtattgatgcaaatggAgttactccaatgcctccagc	9	9	0	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	11	89075271	89075271	A	G	SNP	NOX4	ENST00000413594	human	ensembl	69_37n	-1	known	silent	c.1371	p.T457	0.993	pfam_Fe_red_NAD-bd_6,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	62	0	0	9	24	72.73	-	-	-	G	89075271	A	G	89075271	2	3	414	1	0	0	0	0	0	0	0	1	10630	291	11	5		5	NOX4	11	89075271	Silent	SNP	A	TCGA-AR-A2LK-01A-11D-A17W-09		89075271	45931245	19	41384										
DCPS	0	genome.wustl.edu	37	chr11	126174159	126174159	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	agtctgcgcgggacaaaatcAttttcctacacgggaaggta	11	9	2	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	11	126174159	126174159	A	T	SNP	DCPS	ENST00000263579	human	ensembl	69_37n	1	known	missense	c.184	p.I62F	0.637	pfam_Scavenger_mRNA_decap_enz,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_Scavenger_mRNA_decap_enz	pfam_Scavenger_mRNA_decap_enz,superfamily_HIT-like,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_Scavenger_mRNA_decap_enz	-	no_errors	DCPS	HGNC	ENSG00000110063	47	0	0	3	25	89.29	-	-	-	T	126174159	A	T	126174159	3	4	414	1	0	0	0	0	1	0	0	0	4332	217	8	5	186	5	DCPS	11	126174159	Missense_Mutation	SNP	A	TCGA-AR-A2LK-01A-11D-A17W-09	37098888	126174159	8832357	20	41385										
CPNE6	0	genome.wustl.edu	37	chr14	24546220	24546220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gcagagcaccggccaagccaCggtaggaagacatggcgggc	16	12	0	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	14	24546220	24546220	C	T	SNP	CPNE6	ENST00000537691	human	ensembl	69_37n	1	known	missense	c.1463	p.T488M	1.000	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884	40	0	0	18	16	47.06	-	-	-	T	24546220	C	T	24546220	3	4	414	1	0	0	0	0	1	0	0	0	3846	550	19	1	1348	1	CPNE6	14	24546220	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09		24546220	82803320	21	41386										
GJD2	0	genome.wustl.edu	37	chr15	35044895	35044895	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	atgaacactagaaagacagtCttctcagttggccgggacac	10	10	2	3			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	15	35044895	35044895	C	T	SNP	GJD2	ENST00000290374	human	ensembl	69_37n	-1	known	silent	c.750	p.K250	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248	109	0	0	51	29	36.25	-	-	-	T	35044895	C	T	35044895	2	4	414	1	0	0	0	0	0	0	0	1	6469	912	32	2		2	GJD2	15	35044895	Silent	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09		35044895	67486497	22	41387										
OTOA	0	genome.wustl.edu	37	chr16	21716591	21716591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	caagtgcagccacctgagggGcttccaggctggcgtccaga	14	13	0	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	16	21716591	21716591	G	T	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.1124	p.G375V	1.000	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	71	0	0	59	45	43.27	-	-	-	T	21716591	G	T	21716591	3	4	414	1	0	0	0	0	1	0	0	0	11375	1203	42	4	1170	4	OTOA	16	21716591	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		21716591	68638162	23	41388										
SCN4A	0	genome.wustl.edu	37	chr17	62019025	62019025	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	aggatggggttgaggagcccGtcccagccggccgacgtggt	18	11	0	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	17	62019025	62019025	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.4617	p.D1539	0.662	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	36	0	0	49	25	33.78	-	-	-	A	62019025	G	A	62019025	2	1	414	1	0	0	0	0	0	0	0	1	14008	1136	40	1		1	SCN4A	17	62019025	Silent	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		62019025	19176185	24	41389										
ABCA8	0	genome.wustl.edu	37	chr17	66899538	66899538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	agagagccacaccacctattGtctttctcatcttgttaagt	6	11	3	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	17	66899538	66899538	G	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.2501	p.T834K	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	128	1	0.78	72	68	48.57	-	-	-	T	66899538	G	T	66899538	3	4	414	1	0	0	0	0	1	0	0	0	38	1377	48	4	2448	4	ABCA8	17	66899538	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	4880513	66899538	14295672	25	41390										
DSG3	0	genome.wustl.edu	37	chr18	29036959	29036959	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	atccctttttacataagactAaaggtcaatatgatgaagaa	6	6	1	4			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	18	29036959	29036959	A	C	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	missense	c.88	p.K30Q	0.067	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	85	0	0	53	28	34.57	-	-	-	C	29036959	A	C	29036959	3	2	414	1	0	0	0	0	1	0	0	0	4813	363	13	5	98	5	DSG3	18	29036959	Missense_Mutation	SNP	A	TCGA-AR-A2LK-01A-11D-A17W-09		29036959	49040289	26	41391										
CDH20	0	genome.wustl.edu	37	chr18	59166446	59166446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	cagatatggacaggggagacGgatccatcaaatacatcctc	10	10	1	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	18	59166446	59166446	G	A	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.274	p.G92R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	61	0	0	60	7	10.45	-	-	-	A	59166446	G	A	59166446	3	1	414	1	0	0	0	0	1	0	0	0	3135	1117	39	1	280	1	CDH20	18	59166446	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	30129487	59166446	18910802	27	41392										
C19orf35	0	genome.wustl.edu	37	chr19	2276415	2276417	+	In_Frame_Del	DEL	TTG	TTG	-													0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ggccacacagcccctgcagaTtgaagtgtggagacagggag							TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	19	2276415	2276417	TTG	-	DEL	C19orf35	ENST00000342063	human	ensembl	69_37n	-1	known	in_frame_del	c.686_684	p.N229in_frame_del	0.704:0.954:0.974	NULL	NULL	-	no_errors	C19orf35	HGNC	ENSG00000188305	10	0	0	0	3	100	-	-	-	-	2276417	TTG	-	2276415	7	5	414	1	0	1	0	1	0	0	0	0	1938	1493	52	0	739	0	C19orf35	19	2276415	In_Frame_Del	DEL	TTG	TCGA-AR-A2LK-01A-11D-A17W-09		2276415	56852568	28	41393										
IL12RB1	0	genome.wustl.edu	37	chr19	18174806	18174806	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ggtaacttgggtctctgtggGctgcacgggatgctctgcag	16	9	2	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	19	18174806	18174806	G	T	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.1498	p.P500T	0.125	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	46	0	0	35	4	10.26	-	-	-	T	18174806	G	T	18174806	3	4	414	1	0	0	0	0	1	0	0	0	7680	1203	42	4	510	4	IL12RB1	19	18174806	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09	15898391	18174806	40954177	29	41394										
FCGBP	0	genome.wustl.edu	37	chr19	40419909	40419909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ctcttcttgccagctgttccCaaaggccagtgcattggcag	10	13	2	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	19	40419909	40419909	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.3085	p.G1029R	0.890	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	64	0	0	30	33	52.38	-	-	-	T	40419909	C	T	40419909	3	4	414	1	0	0	0	0	1	0	0	0	5824	594	21	4	13256	4	FCGBP	19	40419909	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	22245103	40419909	18709074	30	41395										
BIRC7	0	genome.wustl.edu	37	chr20	61867655	61867655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	acagaggaggaagaggaggaGggcgccggggccaccttgtc	19	9	0	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	20	61867655	61867655	G	T	SNP	BIRC7	ENST00000217169	human	ensembl	69_37n	1	known	missense	c.207	p.E69D	0.000	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197	16	0	0	11	24	68.57	-	-	-	T	61867655	G	T	61867655	3	4	414	1	0	0	0	0	1	0	0	0	1444	991	35	4	209	4	BIRC7	20	61867655	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		61867655	1157865	31	41396										
TMPRSS6	0	genome.wustl.edu	37	chr22	37482346	37482346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	ggaagaccaccggctgcacgGagagcacgaaggggtcgtag	17	10	0	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	22	37482346	37482346	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	missense	c.950	p.S317F	1.000	pirsf_Pept_S1A_matriptase-2,superfamily_CUB	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	36	0	0	10	14	58.33	-	-	-	A	37482346	G	A	37482346	3	1	414	1	0	0	0	0	1	0	0	0	16346	1174	41	2	1502	2	TMPRSS6	22	37482346	Missense_Mutation	SNP	G	TCGA-AR-A2LK-01A-11D-A17W-09		37482346	13822220	32	41397										
ZNF645	0	genome.wustl.edu	37	chrX	22291800	22291800	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	gtgggaaaccgttagtatttTtacgagaaaacatggcaatt	10	5	0	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	X	22291800	22291800	T	A	SNP	ZNF645	ENST00000323684	human	ensembl	69_37n	1	known	missense	c.692	p.F231Y	0.039	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809	27	0	0	28	5	15.15	-	-	-	A	22291800	T	A	22291800	3	1	414	1	0	0	0	0	1	0	0	0	18157	1841	64	5	694	5	ZNF645	23	22291800	Missense_Mutation	SNP	T	TCGA-AR-A2LK-01A-11D-A17W-09		22291800	132978760	33	41398										
WDR13	0	genome.wustl.edu	37	chrX	48458037	48458037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tcgggccatggccggggacaCgtcactgagcgagaactatg	15	11	1	2			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	X	48458037	48458037	C	T	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	missense	c.455	p.T152M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	60	0	0	45	21	31.82	-	-	-	T	48458037	C	T	48458037	3	4	414	1	0	0	0	0	1	0	0	0	17372	536	19	1	469	1	WDR13	23	48458037	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	26166237	48458037	106812523	34	41399										
ZDHHC9	0	genome.wustl.edu	37	chrX	128975839	128975839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	tttgccgggccatcatgacgCggccatcacagcaaaaggtg	12	12	2	1			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	X	128975839	128975839	C	T	SNP	ZDHHC9	ENST00000357166	human	ensembl	69_37n	-1	known	missense	c.83	p.R28H	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC9	HGNC	ENSG00000188706	118	0	0	107	31	22.46	-	-	-	T	128975839	C	T	128975839	3	4	414	1	0	0	0	0	1	0	0	0	17718	768	27	1	1047	1	ZDHHC9	23	128975839	Missense_Mutation	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	80517802	128975839	26294721	35	41400										
ZIC3	0	genome.wustl.edu	37	chrX	136649099	136649099	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	4	0.553235724720845	1.59627329192547	NA	1.59627329192547	0.0285714285714286	0.251737451737452	0	cagggttcgggctacgccaaCgccctgggccaccatcacca	11	17	1	0			TCGA-AR-A2LK-01A-11D-A17W-09	TCGA-AR-A2LK-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b0b60c7-5fa0-440e-937f-8d82119330d6	adfefa9c-2e3e-444d-8018-f364999f5f42	X	136649099	136649099	C	T	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	silent	c.249	p.N83	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	25	0	0	10	16	61.54	-	-	-	T	136649099	C	T	136649099	2	4	414	1	0	0	0	0	0	0	0	1	17776	535	19	1		1	ZIC3	23	136649099	Silent	SNP	C	TCGA-AR-A2LK-01A-11D-A17W-09	7673260	136649099	18621461	36	41401										
EPHA2	0	genome.wustl.edu	37	chr1	16464648	16464648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccttggcacccatgcccaCggctgtgaggtagtgtgggg	15	12	0	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	1	16464648	16464648	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	missense	c.1012	p.V338M	0.166	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	10	0	0	10	5	33.33	-	-	-	T	16464648	C	T	16464648	3	4	415	1	0	0	0	0	1	0	0	0	5204	536	19	1	1970	1	EPHA2	1	16464648	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		16464648	232785973	1	41402										
CD48	0	genome.wustl.edu	37	chr1	160654790	160654790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagagatgtacagtgcgccaCtctgaggatcaagtctgacc	11	10	3	3			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	1	160654790	160654790	C	T	SNP	CD48	ENST00000368046	human	ensembl	69_37n	-1	known	missense	c.272	p.S91N	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD48	HGNC	ENSG00000117091	46	0	0	95	55	36.67	-	-	-	T	160654790	C	T	160654790	3	4	415	1	0	0	0	0	1	0	0	0	3049	565	20	4	471	4	CD48	1	160654790	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09	144190142	160654790	88595831	2	41403										
MYO3B	0	genome.wustl.edu	37	chr2	171509542	171509542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatattacaaatctctgtcaCcagtggactgtatccctgag	7	10	2	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	171509542	171509542	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	missense	c.3964	p.P1322S	0.991	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	77	0	0	63	31	32.98	-	-	-	T	171509542	C	T	171509542	3	4	415	1	0	0	0	0	1	0	0	0	10149	507	18	4	4201	4	MYO3B	2	171509542	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		171509542	71689831	3	41404										
ITGA6	0	genome.wustl.edu	37	chr2	173362764	173362764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcgggagtaccttggtggaTcatcctagtggctattctcg	12	9	2	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	173362764	173362764	T	C	SNP	ITGA6	ENST00000264106	human	ensembl	69_37n	1	known	missense	c.3167	p.I1056T	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	177	0	0	146	80	35.4	-	-	-	C	173362764	T	C	173362764	3	2	415	1	0	0	0	0	1	0	0	0	7934	1435	50	5	3144	5	ITGA6	2	173362764	Missense_Mutation	SNP	T	TCGA-AR-A2LL-01A-11D-A17W-09	1853222	173362764	69836609	4	41405										
RAPGEF4	0	genome.wustl.edu	37	chr2	173891911	173891911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgaaattcagttttgggtcGtcactgagatctgcctttgt	10	7	3	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	173891911	173891911	G	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	missense	c.2482	p.V828I	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	36	0	0	33	10	23.26	-	-	-	A	173891911	G	A	173891911	3	1	415	1	0	0	0	0	1	0	0	0	13129	1145	40	1	2596	1	RAPGEF4	2	173891911	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09	529147	173891911	69307462	5	41406										
KLF15	0	genome.wustl.edu	37	chr3	126070862	126070862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttctggcccatgaggagacCggcagggccaggccccaggg	16	14	1	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	3	126070862	126070862	C	T	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.904	p.G302S	0.448	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	53	0	0	39	34	46.58	-	-	-	T	126070862	C	T	126070862	3	4	415	1	0	0	0	0	1	0	0	0	8396	652	23	1	354	1	KLF15	3	126070862	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		126070862	71951568	6	41407										
CLNK	0	genome.wustl.edu	37	chr4	10515108	10515108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttctatcagaccttttggGgaaaggtggtctccagcttg	11	9	3	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	4	10515108	10515108	G	T	SNP	CLNK	ENST00000226951	human	ensembl	69_37n	-1	known	missense	c.886	p.P296T	0.120	NULL	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	61	0	0	58	58	50	-	-	-	T	10515108	G	T	10515108	3	4	415	1	0	0	0	0	1	0	0	0	3577	1232	43	4	416	4	CLNK	4	10515108	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09		10515108	180639168	7	41408										
HERC6	0	genome.wustl.edu	37	chr4	89338639	89338639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgatccagatgcttaaagcaGccatcatctctcagctgctt	7	12	3	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	4	89338639	89338639	G	A	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.1621	p.A541T	0.012	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	75	0	0	83	18	17.82	-	-	-	A	89338639	G	A	89338639	3	1	415	1	0	0	0	0	1	0	0	0	7113	971	34	4	1468	4	HERC6	4	89338639	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09	78823531	89338639	101815637	8	41409										
RAPGEF6	0	genome.wustl.edu	37	chr5	130825308	130825308	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatttcaacggctttcataaAtgtaatattctcaaagtttt	4	6	3	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	5	130825308	130825308	A	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.1771	p.F591V	0.968	pfam_PDZ,superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	68	0	0	55	35	38.89	-	-	-	C	130825308	A	C	130825308	3	2	415	1	0	0	0	0	1	0	0	0	13131	101	4	5	3576	5	RAPGEF6	5	130825308	Missense_Mutation	SNP	A	TCGA-AR-A2LL-01A-11D-A17W-09		130825308	50089952	9	41410										
IRAK1BP1	0	genome.wustl.edu	37	chr6	79577396	79577396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctcagggagagagacgctaCcgggcttacgccaccccctc	11	17	1	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	6	79577396	79577396	C	T	SNP	IRAK1BP1	ENST00000369940	human	ensembl	69_37n	1	known	missense	c.103	p.P35S	0.042	NULL	pfam_DUF541	-	no_errors	IRAK1BP1	HGNC	ENSG00000146243	15	0	0	17	15	46.88	-	-	-	T	79577396	C	T	79577396	3	4	415	1	0	0	0	0	1	0	0	0	7876	507	18	4	105	4	IRAK1BP1	6	79577396	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		79577396	91537671	10	41411										
WNT16	0	genome.wustl.edu	37	chr7	120969710	120969711	+	Frame_Shift_Ins	INS	-	-	TT													0	0	1	0	0	0	1	1	0	cagaaggagctgtgcaagagINSgaaaccgtacctgctgccga							TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	7	120969710	120969711	-	TT	INS	WNT16	ENST00000222462	human	ensembl	69_37n	1	known	frame_shift_ins	c.185_186	p.R62fs	0.992:1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	15	0	0	27	7	20.59	-	-	-	TT	120969711	-	TT	120969710	7	5	415	1	0	1	1	0	0	0	0	0	17482	1000	35	0	260	0	WNT16	7	120969710	Frame_Shift_Ins	INS	-	TCGA-AR-A2LL-01A-11D-A17W-09		120969710	38168953	11	41412										
FRMD3	0	genome.wustl.edu	37	chr9	85905548	85905548	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	aggaagttcttcttcttgctCgctgggggaaggaagcaggg	16	7	3	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	9	85905548	85905548	C	G	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.1165	p.E389Q	0.998	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	43	0	0	57	42	42.42	-	-	-	G	85905548	C	G	85905548	3	3	415	1	0	0	0	0	1	0	0	0	6099	893	31	3	636	3	FRMD3	9	85905548	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		85905548	55307883	12	41413										
FKTN	0	genome.wustl.edu	37	chr9	108380351	108380351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttcaggatgcaggacttcCgctcaaacacaaatttggga	9	9	2	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	9	108380351	108380351	C	T	SNP	FKTN	ENST00000223528	human	ensembl	69_37n	1	known	missense	c.1022	p.P341L	0.998	pfam_LicD	pfam_LicD,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	-	no_errors	FKTN	HGNC	ENSG00000106692	41	0	0	21	6	22.22	-	-	-	T	108380351	C	T	108380351	3	4	415	1	0	0	0	0	1	0	0	0	5965	652	23	1	1048	1	FKTN	9	108380351	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09	22474803	108380351	32833080	13	41414										
PTEN	0	genome.wustl.edu	37	chr10	89692886	89692886	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcatgttgcagcaattcacTgtaaagctggaaagggacga	11	7	2	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	10	89692886	89692886	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.370	p.C124S	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	94	0	0	28	27	49.09	-	-	-	A	89692886	T	A	89692886	3	1	415	1	0	0	0	0	1	0	0	0	12818	1580	55	5	388	5	PTEN	10	89692886	Missense_Mutation	SNP	T	TCGA-AR-A2LL-01A-11D-A17W-09		89692886	45841861	14	41415										
NUP98	0	genome.wustl.edu	37	chr11	3723746	3723746	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aactccatggaatcggcaatCtgatgattttctagttcatg	8	8	3	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	11	3723746	3723746	C	A	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.3459	p.Q1153H	0.306	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	48	0	0	36	20	35.71	-	-	-	A	3723746	C	A	3723746	3	1	415	1	0	0	0	0	1	0	0	0	10846	912	32	2	1987	2	NUP98	11	3723746	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		3723746	131282770	15	41416										
OR8K3	0	genome.wustl.edu	37	chr11	56086657	56086657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tcccttgatctatagtttacGaaacaaagatgtaaaatatg	6	6	1	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	11	56086657	56086657	G	A	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	1	known	missense	c.875	p.R292Q	0.997	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	66	0	0	49	6	10.91	-	-	-	A	56086657	G	A	56086657	3	1	415	1	0	0	0	0	1	0	0	0	11317	1058	37	1	877	1	OR8K3	11	56086657	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09	52362911	56086657	78919859	16	41417										
TUBA3C	0	genome.wustl.edu	37	chr13	19748238	19748238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctcagcatgcacacagccCgctgcaccttggccaggtct	10	16	2	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	13	19748238	19748238	C	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	missense	c.1118	p.R373Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	64	0	0	36	23	38.98	-	-	-	T	19748238	C	T	19748238	3	4	415	1	0	0	0	0	1	0	0	0	16843	652	23	1	238	1	TUBA3C	13	19748238	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		19748238	95421640	17	41418										
C14orf105	0	genome.wustl.edu	37	chr14	57949847	57949847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcctgaagtaattactcgtGgcaagtcaatgggttcaagc	10	8	2	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	14	57949847	57949847	G	T	SNP	C14orf105	ENST00000216445	human	ensembl	69_37n	-1	known	missense	c.329	p.P110Q	1.000	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557	80	0	0	91	33	26.61	-	-	-	T	57949847	G	T	57949847	3	4	415	1	0	0	0	0	1	0	0	0	1749	1348	47	4	577	4	C14orf105	14	57949847	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09		57949847	49399693	18	41419										
WDR25	0	genome.wustl.edu	37	chr14	100847946	100847946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccatatttgaatagccatTataaagaaaccacagttccc	5	10	0	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	14	100847946	100847946	T	C	SNP	WDR25	ENST00000335290	human	ensembl	69_37n	1	known	missense	c.685	p.Y229H	0.001	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473	28	0	0	30	9	23.08	-	-	-	C	100847946	T	C	100847946	3	2	415	1	0	0	0	0	1	0	0	0	17379	1754	61	5	687	5	WDR25	14	100847946	Missense_Mutation	SNP	T	TCGA-AR-A2LL-01A-11D-A17W-09	42898099	100847946	6501594	19	41420										
ITGAM	0	genome.wustl.edu	37	chr16	31282377	31282377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggagtttgtctcaactgtgaTggagcaattaaaaaagtcca	10	6	1	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	16	31282377	31282377	T	C	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	missense	c.530	p.M177T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	56	0	0	51	30	37.04	-	-	-	C	31282377	T	C	31282377	3	2	415	1	0	0	0	0	1	0	0	0	7941	1464	51	5	552	5	ITGAM	16	31282377	Missense_Mutation	SNP	T	TCGA-AR-A2LL-01A-11D-A17W-09		31282377	59072376	20	41421										
CDH1	0	genome.wustl.edu	37	chr16	68844244	68844244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcatggaaggtgctcttccaGgtatatccactaatgagaat	9	8	2	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	16	68844244	68844244	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.832	p.G278R	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	43	0	0	17	11	39.29	-	-	-	A	68844244	G	A	68844244	3	1	415	1	0	0	0	0	1	0	0	0	3124	1014	35	4	854	4	CDH1	16	68844244	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09	37561867	68844244	21510509	21	41422										
ABCA9	0	genome.wustl.edu	37	chr17	67029972	67029972	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtatggattttgtgaagaatCcaagtgggcattagaattca	11	4	1	3			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	17	67029972	67029972	C	A	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.1171	p.D391Y	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	58	0	0	88	26	22.81	-	-	-	A	67029972	C	A	67029972	3	1	415	1	0	0	0	0	1	0	0	0	39	855	30	2	3827	2	ABCA9	17	67029972	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		67029972	14165238	22	41423										
CSNK1G2	0	genome.wustl.edu	37	chr19	1978327	1978327	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaatctctatacaaatgaaTacgtggctatcaaattggtg	8	6	2	2			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	19	1978327	1978327	T	C	SNP	CSNK1G2	ENST00000255641	human	ensembl	69_37n	1	known	missense	c.211	p.Y71H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1G2	HGNC	ENSG00000133275	22	0	0	25	8	24.24	-	-	-	C	1978327	T	C	1978327	3	2	415	1	0	0	0	0	1	0	0	0	3987	1406	49	5	217	5	CSNK1G2	19	1978327	Missense_Mutation	SNP	T	TCGA-AR-A2LL-01A-11D-A17W-09		1978327	57150656	23	41424										
FCGBP	0	genome.wustl.edu	37	chr19	40377034	40377034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	21	0	0	31	6	16.22	-	-	-	A	40377034	G	A	40377034	2	1	415	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40377034	Silent	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09	38398707	40377034	18751949	24	41425										
SIRPB2	0	genome.wustl.edu	37	chr20	1460499	1460499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	agtggttctgatgtccgttgGatcatgggcattaccccagg	13	9	2	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	20	1460499	1460499	G	C	SNP	SIRPB2	ENST00000359801	human	ensembl	69_37n	-1	known	missense	c.297	p.I99M	0.147	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIRPB2	HGNC	ENSG00000196209	46	0	0	75	19	20.21	-	-	-	C	1460499	G	C	1460499	3	2	415	1	0	0	0	0	1	0	0	0	14423	1164	41	2	747	2	SIRPB2	20	1460499	Missense_Mutation	SNP	G	TCGA-AR-A2LL-01A-11D-A17W-09		1460499	61565021	25	41426										
GRPR	0	genome.wustl.edu	37	chrX	16170432	16170432	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ctggtgtttgtgggcctgttCgccttctgctggctccccaa	12	13	1	0			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	X	16170432	16170432	C	T	SNP	GRPR	ENST00000380289	human	ensembl	69_37n	1	known	silent	c.819	p.F273	0.843	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010	38	0	0	22	12	35.29	-	-	-	T	16170432	C	T	16170432	2	4	415	1	0	0	0	0	0	0	0	1	6859	883	31	1		1	GRPR	23	16170432	Silent	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09		16170432	139100128	26	41427										
IL1RAPL2	0	genome.wustl.edu	37	chrX	105011476	105011476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taaacatgagataccagccaCgaccttgccagtaccttcct	6	14	0	1			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	X	105011476	105011476	C	T	SNP	IL1RAPL2	ENST00000344799	human	ensembl	69_37n	1	known	missense	c.1883	p.T628M	0.217	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_Interleukin-1_rcpt_II	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108	65	0	0	40	22	35.48	-	-	-	T	105011476	C	T	105011476	3	4	415	1	0	0	0	0	1	0	0	0	7716	536	19	1	1921	1	IL1RAPL2	23	105011476	Missense_Mutation	SNP	C	TCGA-AR-A2LL-01A-11D-A17W-09	88841044	105011476	50259084	27	41428										
USP48	0	genome.wustl.edu	37	chr1	22021710	22021710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	tttgccgctttgttccaccaTtgctctataatgaagattgg	8	9	1	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	22021710	22021710	T	C	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	missense	c.2732	p.N911S	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	178	0	0	122	39	24.22	-	-	-	C	22021710	T	C	22021710	3	2	416	1	0	0	0	0	1	0	0	0	17176	1493	52	5	395	5	USP48	1	22021710	Missense_Mutation	SNP	T	TCGA-AR-A2LM-01A-11D-A17W-09		22021710	227228911	1	41429										
HRNR	0	genome.wustl.edu	37	chr1	152189237	152189237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	cagacccatgttggccactgCtggaagaccgaccggagcca	12	14	0	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	152189237	152189237	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.4868	p.S1623T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	16	0	0	11	6	35.29	-	-	-	G	152189237	C	G	152189237	3	3	416	1	0	0	0	0	1	0	0	0	7410	797	28	4	3688	4	HRNR	1	152189237	Missense_Mutation	SNP	C	TCGA-AR-A2LM-01A-11D-A17W-09	130167527	152189237	97061384	2	41430										
SLC30A1	0	genome.wustl.edu	37	chr1	211749347	211749347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	accagcctcataaactgatgCatgagtactattaattattt	5	8	1	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	211749347	211749347	C	G	SNP	SLC30A1	ENST00000367001	human	ensembl	69_37n	-1	known	missense	c.907	p.A303P	0.005	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385	113	0	0	96	18	15.79	-	-	-	G	211749347	C	G	211749347	3	3	416	1	0	0	0	0	1	0	0	0	14642	710	25	4	620	4	SLC30A1	1	211749347	Missense_Mutation	SNP	C	TCGA-AR-A2LM-01A-11D-A17W-09	59560110	211749347	37501274	3	41431										
C1orf101	0	genome.wustl.edu	37	chr1	244735950	244735950	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	agaggctctgacagtttggaCtcagatcgtctatccagaaa	10	9	3	4			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	244735950	244735950	C	A	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.1826	p.T609N	0.407	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	99	0	0	98	17	14.78	-	-	-	A	244735950	C	A	244735950	3	1	416	1	0	0	0	0	1	0	0	0	1995	565	20	4	1868	4	C1orf101	1	244735950	Missense_Mutation	SNP	C	TCGA-AR-A2LM-01A-11D-A17W-09	32986603	244735950	4514671	4	41432										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0	34	10	22.73	-	-	-	A	178921553	T	A	178921553	3	1	416	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-AR-A2LM-01A-11D-A17W-09		178921553	19100877	5	41433										
KCNIP1	0	genome.wustl.edu	37	chr5	170145803	170145803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	agatgaccatggtttgccatCggcccgagggactggagcag	15	10	0	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	5	170145803	170145803	C	T	SNP	KCNIP1	ENST00000411494	human	ensembl	69_37n	1	known	missense	c.136	p.R46W	1.000	prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	KCNIP1	HGNC	ENSG00000182132	68	0	0	29	11	27.5	-	-	-	T	170145803	C	T	170145803	3	4	416	1	0	0	0	0	1	0	0	0	8093	875	31	1	238	1	KCNIP1	5	170145803	Missense_Mutation	SNP	C	TCGA-AR-A2LM-01A-11D-A17W-09		170145803	10769457	6	41434										
PREX2	0	genome.wustl.edu	37	chr8	69046352	69046352	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	cagactcttgtggccactgtCtgtgccttctctgagcagct	10	13	3	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	8	69046352	69046352	C	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	silent	c.3825	p.V1275	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	89	0	0	53	21	28.38	-	-	-	T	69046352	C	T	69046352	2	4	416	1	0	0	0	0	0	0	0	1	12558	900	32	2		2	PREX2	8	69046352	Silent	SNP	C	TCGA-AR-A2LM-01A-11D-A17W-09		69046352	77317670	7	41435										
TCERG1L	0	genome.wustl.edu	37	chr10	132961403	132961403	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	accagggggatccgggcaccGgggtggaggccactggcctg	19	12	0	0			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	10	132961403	132961403	G	C	SNP	TCERG1L	ENST00000368642	human	ensembl	69_37n	-1	known	missense	c.1016	p.P339R	0.896	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1L	HGNC	ENSG00000176769	100	0	0	40	15	27.27	-	-	-	C	132961403	G	C	132961403	3	2	416	1	0	0	0	0	1	0	0	0	15781	1116	39	3	772	3	TCERG1L	10	132961403	Missense_Mutation	SNP	G	TCGA-AR-A2LM-01A-11D-A17W-09		132961403	2573344	8	41436										
SULT1A4	0	genome.wustl.edu	37	chr16	29472811	29472811	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	gggcccctgcagagcttccaAgcccgacctgatgacctgct	11	16	0	3			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	8	0	0	5	7	58.33	-	-	-	G	29472811	A	G	29472811	2	3	416	1	0	0	0	0	0	0	0	1	15466	69	3	5		5	SULT1A4	16	29472811	Silent	SNP	A	TCGA-AR-A2LM-01A-11D-A17W-09		29472811	60881942	9	41437										
RPRD1A	0	genome.wustl.edu	37	chr18	33647353	33647353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	ttcttctccagcgccgcctcAgagaaggctgacatccctcc	8	17	3	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	18	33647353	33647353	A	G	SNP	RPRD1A	ENST00000357384	human	ensembl	69_37n	-1	known	silent	c.15	p.S5	0.405	superfamily_ENTH_VHS	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1A	HGNC	ENSG00000141425	95	0	0	43	22	33.33	-	-	-	G	33647353	A	G	33647353	2	3	416	1	0	0	0	0	0	0	0	1	13701	175	7	5		5	RPRD1A	18	33647353	Silent	SNP	A	TCGA-AR-A2LM-01A-11D-A17W-09		33647353	44429895	10	41438										
ZBTB32	0	genome.wustl.edu	37	chr19	36205635	36205635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	tgatactctgatcaccgtagGgagccaggagttccccgccc	11	14	2	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	19	36205635	36205635	G	A	SNP	ZBTB32	ENST00000262630	human	ensembl	69_37n	1	known	missense	c.107	p.G36E	0.965	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590	51	0	0	27	17	38.64	-	-	-	A	36205635	G	A	36205635	3	1	416	1	0	0	0	0	1	0	0	0	17631	1232	43	4	109	4	ZBTB32	19	36205635	Missense_Mutation	SNP	G	TCGA-AR-A2LM-01A-11D-A17W-09		36205635	22923348	11	41439										
ESF1	0	genome.wustl.edu	37	chr20	13753198	13753198	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	atcttcaggaatacttaataGctctactggtccttgaactt	6	9	3	1			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	20	13753198	13753198	G	C	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	missense	c.1213	p.L405V	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	336	0	0	177	47	20.98	-	-	-	C	13753198	G	C	13753198	3	2	416	1	0	0	0	0	1	0	0	0	5288	962	34	4	1382	4	ESF1	20	13753198	Missense_Mutation	SNP	G	TCGA-AR-A2LM-01A-11D-A17W-09		13753198	49272322	12	41440										
NRIP1	0	genome.wustl.edu	37	chr21	16339800	16339801	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	ttgcaacagcctgtaatcttINSgcagcacatgacaacggttc							TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	21	16339800	16339801	-	G	INS	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	frame_shift_ins	c.714_713	p.R239fs	0.305:0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	225	0	0	137	40	22.6	-	-	-	G	16339801	-	G	16339800	7	5	416	1	0	1	1	0	0	0	0	0	10725	1799	63	0	2766	0	NRIP1	21	16339800	Frame_Shift_Ins	INS	-	TCGA-AR-A2LM-01A-11D-A17W-09		16339800	31790095	13	41441										
FAM46D	0	genome.wustl.edu	37	chrX	79698447	79698447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.951642479773168	0.902597402597403	0	2.10606060606061	1	1	0	acgtacagaaattggtcaagGtttgcaatgggcatgattgt	12	5	1	2			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	X	79698447	79698447	G	T	SNP	FAM46D	ENST00000308293	human	ensembl	69_37n	1	known	missense	c.409	p.V137F	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	99	0	0	43	25	36.76	-	-	-	T	79698447	G	T	79698447	3	4	416	1	0	0	0	0	1	0	0	0	5614	1261	44	4	411	4	FAM46D	23	79698447	Missense_Mutation	SNP	G	TCGA-AR-A2LM-01A-11D-A17W-09		79698447	75572113	14	41442										
GMEB1	0	genome.wustl.edu	37	chr1	29041281	29041281	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ggagattgtggtcttagaggAttaactggggatctcagggc	16	5	2	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	29041281	29041281	A	T	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	1	known	missense	c.1718	p.D573V	1.000	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	20	0	0	21	8	27.59	-	-	-	T	29041281	A	T	29041281	3	4	417	1	0	0	0	0	1	0	0	0	6539	333	12	5	1752	5	GMEB1	1	29041281	Missense_Mutation	SNP	A	TCGA-AR-A2LN-01A-21D-A18P-09		29041281	220209340	1	41443										
C1orf173	0	genome.wustl.edu	37	chr1	75038972	75038972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tggcttccacgccctcaaggGagcctcatgaacagctcctg	10	15	2	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	75038972	75038972	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.2422	p.P808S	0.001	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	63	0	0	135	35	20.59	-	-	-	A	75038972	G	A	75038972	3	1	417	1	0	0	0	0	1	0	0	0	2033	1174	41	2	2174	2	C1orf173	1	75038972	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	45997691	75038972	174211649	2	41444										
CDC73	0	genome.wustl.edu	37	chr1	193121549	193121549	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tgacactatgggaacctaccAtggtatgacactgaaatctg	9	9	1	3			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	193121549	193121549	A	T	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.947	p.H316L	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	62	0	0	171	31	15.35	-	-	-	T	193121549	A	T	193121549	3	4	417	1	0	0	0	0	1	0	0	0	3114	217	8	5	985	5	CDC73	1	193121549	Missense_Mutation	SNP	A	TCGA-AR-A2LN-01A-21D-A18P-09	118082577	193121549	56129072	3	41445										
CDC42BPA	0	genome.wustl.edu	37	chr1	227300567	227300567	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ctctgacagtgtgcgtctttCagctctttggattggttttt	10	8	4	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	227300567	227300567	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	silent	c.1695	p.L565	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	94	0	0	387	67	14.76	-	-	-	T	227300567	C	T	227300567	2	4	417	1	0	0	0	0	0	0	0	1	3101	813	29	2		2	CDC42BPA	1	227300567	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	34179018	227300567	21950054	4	41446										
HK2	0	genome.wustl.edu	37	chr2	75107455	75107455	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ggctgcgatgtccgcttcctCcgctccgaggatggcagtgg	15	13	0	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	75107455	75107455	C	T	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	silent	c.1329	p.L443	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	41	0	0	26	14	35	-	-	-	T	75107455	C	T	75107455	2	4	417	1	0	0	0	0	0	0	0	1	7242	842	30	2		2	HK2	2	75107455	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		75107455	168091918	5	41447										
XIRP2	0	genome.wustl.edu	37	chr2	168105004	168105004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cgatgtttctgccgcctcctCctcctccaactccatctcaa	4	19	2	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	168105004	168105004	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.7102	p.P2368S	0.997	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	41	0	0	115	17	12.88	-	-	-	T	168105004	C	T	168105004	3	4	417	1	0	0	0	0	1	0	0	0	17527	855	30	2	7132	2	XIRP2	2	168105004	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	92997549	168105004	75094369	6	41448										
TTN	0	genome.wustl.edu	37	chr2	179419393	179419393	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	agtgatttttgcaccaccatCatcagctggaggccgccaga	10	12	2	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	179419393	179419393	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.80977	p.D26993N	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	56	0	0	105	35	25	-	-	-	T	179419393	C	T	179419393	3	4	417	1	0	0	0	0	1	0	0	0	16832	826	29	2	19422	2	TTN	2	179419393	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	11314389	179419393	63779980	7	41449										
FZD5	0	genome.wustl.edu	37	chr2	208633332	208633332	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	atgtgcgtcaggttgtagccGatgccgcggcacatgggcac	15	11	1	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	208633332	208633332	G	A	SNP	FZD5	ENST00000295417	human	ensembl	69_37n	-1	known	silent	c.132	p.I44	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD5	HGNC	ENSG00000163251	64	0	0	55	9	14.06	-	-	-	A	208633332	G	A	208633332	2	1	417	1	0	0	0	0	0	0	0	1	6182	1048	37	1		1	FZD5	2	208633332	Silent	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	29213939	208633332	34566041	8	41450										
FBXL2	0	genome.wustl.edu	37	chr3	33416839	33416839	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tgtcaccggctacaggctctCtgcctttcgggttgcagcaa	11	13	2	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	33416839	33416839	C	T	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	1	known	silent	c.717	p.L239	0.999	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL2	HGNC	ENSG00000153558	67	0	0	143	35	19.66	-	-	-	T	33416839	C	T	33416839	2	4	417	1	0	0	0	0	0	0	0	1	5762	900	32	2		2	FBXL2	3	33416839	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		33416839	164605591	9	41451										
EPHB1	0	genome.wustl.edu	37	chr3	134911580	134911580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cgaccatcctaacatcattcGcctggagggtgtggtcacca	10	13	2	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	134911580	134911580	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.2045	p.R682H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	104	0	0	119	37	23.72	-	-	-	A	134911580	G	A	134911580	3	1	417	1	0	0	0	0	1	0	0	0	5211	1087	38	1	2087	1	EPHB1	3	134911580	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	101494741	134911580	63110850	10	41452										
TNIK	0	genome.wustl.edu	37	chr3	170802027	170802027	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tgtcgctatgaggccgaatgTtggttgggtttacatttacc	12	7	0	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	170802027	170802027	T	C	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.3086	p.N1029S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	110	1	0.89	258	65	20	-	-	-	C	170802027	T	C	170802027	3	2	417	1	0	0	0	0	1	0	0	0	16408	1725	60	5	1028	5	TNIK	3	170802027	Missense_Mutation	SNP	T	TCGA-AR-A2LN-01A-21D-A18P-09	35890447	170802027	27220403	11	41453										
KIAA0232	0	genome.wustl.edu	37	chr4	6865788	6865788	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	aaatagatttagaaagctcaGaagcaaattgtaaaataatg	7	3	1	3			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	6865788	6865788	G	A	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.3679	p.E1227K	0.999	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	26	0	0	92	22	19.3	-	-	-	A	6865788	G	A	6865788	3	1	417	1	0	0	0	0	1	0	0	0	8215	943	33	2	3697	2	KIAA0232	4	6865788	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09		6865788	184288488	12	41454										
NR3C2	0	genome.wustl.edu	37	chr4	149357960	149357960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cctgagaaacttgaccccacCgtctttccatatctagacct	5	15	2	3			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	149357960	149357960	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.53	p.R18Q	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	38	0	0	66	23	25.84	-	-	-	T	149357960	C	T	149357960	3	4	417	1	0	0	0	0	1	0	0	0	10704	652	23	1	2933	1	NR3C2	4	149357960	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	142492172	149357960	41796316	13	41455										
NEK1	0	genome.wustl.edu	37	chr4	170400599	170400599	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	gttacagaaataacagatctCatctgttgctttgatggaga	9	6	2	4			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	170400599	170400599	C	T	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	missense	c.2094	p.M698I	0.006	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	27	0	0	57	15	20.83	-	-	-	T	170400599	C	T	170400599	3	4	417	1	0	0	0	0	1	0	0	0	10393	826	29	2	1818	2	NEK1	4	170400599	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	21042639	170400599	20753677	14	41456										
ANKHD1	0	genome.wustl.edu	37	chr5	139884447	139884447	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ctggttccaacagttcttctCagaccacagagtgtcttaca	7	12	3	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	5	139884447	139884447	C	T	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	nonsense	c.3046	p.Q1016*	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	54	0	0	92	12	11.32	-	-	-	T	139884447	C	T	139884447	4	4	417	1	0	0	0	0	0	1	0	0	628	827	29	2	3214	2	ANKHD1	5	139884447	Nonsense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		139884447	41030813	15	41457										
MEA1	0	genome.wustl.edu	37	chr6	42980990	42980990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ccccgtttcctcctgctcttCctcaggctcctcactgctcc	5	21	3	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	42980990	42980990	C	T	SNP	MEA1	ENST00000244711	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	1.000	pfam_MEA1	pfam_MEA1	-	no_errors	MEA1	HGNC	ENSG00000124733	63	0	0	101	18	15.13	-	-	-	T	42980990	C	T	42980990	3	4	417	1	0	0	0	0	1	0	0	0	9491	864	30	2	403	2	MEA1	6	42980990	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		42980990	128134077	16	41458										
AKD1	0	genome.wustl.edu	37	chr6	109863350	109863350	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tgatttgattacttcttcttCttctgtaagttgtacttctg	6	7	5	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	109863350	109863350	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.3250	p.E1084K	1.000	smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	89	0	0	197	47	19.26	-	-	-	T	109863350	C	T	109863350	3	4	417	1	0	0	0	0	1	0	0	0	460	922	32	2	2545	2	AKD1	6	109863350	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	66882360	109863350	61251717	17	41459										
NOX3	0	genome.wustl.edu	37	chr6	155750167	155750167	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tgaagttccaggactccagaGgggtggcttaccacctatgt	12	10	0	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	155750167	155750167	G	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.906	p.P302	0.244	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	22	0	0	44	10	18.52	-	-	-	T	155750167	G	T	155750167	2	4	417	1	0	0	0	0	0	0	0	1	10629	987	35	4		4	NOX3	6	155750167	Silent	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	45886817	155750167	15364900	18	41460										
C7orf26	0	genome.wustl.edu	37	chr7	6639592	6639592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	aataggattcttagagctcaCcccgctcgttggattgatcc	9	11	2	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	7	6639592	6639592	C	T	SNP	C7orf26	ENST00000344417	human	ensembl	69_37n	1	known	missense	c.713	p.T238I	1.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576	41	0	0	124	34	21.52	-	-	-	T	6639592	C	T	6639592	3	4	417	1	0	0	0	0	1	0	0	0	2404	507	18	4	727	4	C7orf26	7	6639592	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		6639592	152499071	19	41461										
HIPK2	0	genome.wustl.edu	37	chr7	139416554	139416554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	gctgcttgctgaggtgaccaCgatgtgcccggtgcttcctg	14	12	0	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	7	139416554	139416554	C	T	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.280	p.V94M	0.995	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	148	0	0	185	48	20.6	-	-	-	T	139416554	C	T	139416554	3	4	417	1	0	0	0	0	1	0	0	0	7168	536	19	1	3372	1	HIPK2	7	139416554	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	132776962	139416554	19722109	20	41462										
VPS13B	0	genome.wustl.edu	37	chr8	100479779	100479779	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cgtctcaaaaactgcttgctAcgggacctgatacacgacat	8	12	1	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	8	100479779	100479779	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.3583	p.T1195A	0.006	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	47	0	0	111	25	18.38	-	-	-	G	100479779	A	G	100479779	3	3	417	1	0	0	0	0	1	0	0	0	17287	391	14	5	3796	5	VPS13B	8	100479779	Missense_Mutation	SNP	A	TCGA-AR-A2LN-01A-21D-A18P-09		100479779	45884243	21	41463										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18908545	18908545	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tggaacttgtggcaaagcgtGaagatagggtgtggggaaaa	17	3	0	2			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	9	18908545	18908545	G	A	SNP	ADAMTSL1	ENST00000380545	human	ensembl	69_37n	1	putative	silent	c.1391	p.*464	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	55	0	0	97	28	22.4	-	-	-	A	18908545	G	A	18908545	2	1	417	1	0	0	0	0	0	0	0	1	274	1285	45	2		2	ADAMTSL1	9	18908545	Silent	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09		18908545	122304886	22	41464										
FAM171A1	0	genome.wustl.edu	37	chr10	15255350	15255351	+	Frame_Shift_Ins	INS	-	-	T													0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ggctgattttggttcattcaINStatctacgccagagtccaaa							TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	10	15255350	15255351	-	T	INS	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2237_2236	p.M746fs	1.000:1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	25	0	0	70	20	22.22	-	-	-	T	15255351	-	T	15255350	7	5	417	1	0	1	1	0	0	0	0	0	5530	217	8	0	439	0	FAM171A1	10	15255350	Frame_Shift_Ins	INS	-	TCGA-AR-A2LN-01A-21D-A18P-09		15255350	120279397	23	41465										
FBXL14	0	genome.wustl.edu	37	chr12	1702885	1702885	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	ttgagagcgcgcagggagccGatctcctgcacaaacgcgtg	14	12	1	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	12	1702885	1702885	G	A	SNP	FBXL14	ENST00000339235	human	ensembl	69_37n	-1	known	silent	c.348	p.I116	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823	36	0	0	25	9	26.47	-	-	-	A	1702885	G	A	1702885	2	1	417	1	0	0	0	0	0	0	0	1	5756	1048	37	1		1	FBXL14	12	1702885	Silent	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09		1702885	132149010	24	41466										
FOXJ2	0	genome.wustl.edu	37	chr12	8197502	8197502	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	caggatctaagctggtccttCcgcaacctctataagtccat	7	13	2	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	12	8197502	8197502	C	T	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	silent	c.765	p.F255	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	76	0	0	149	26	14.86	-	-	-	T	8197502	C	T	8197502	2	4	417	1	0	0	0	0	0	0	0	1	6060	854	30	2		2	FOXJ2	12	8197502	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	6494617	8197502	125654393	25	41467										
HEATR5A	0	genome.wustl.edu	37	chr14	31763188	31763188	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	gcagtgttttcaggttttctCttgtctatttcctgcagttt	8	8	3	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	14	31763188	31763188	C	T	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.4400	p.R1467K	0.018	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	137	0	0	323	69	17.6	-	-	-	T	31763188	C	T	31763188	3	4	417	1	0	0	0	0	1	0	0	0	7082	912	32	2	406	2	HEATR5A	14	31763188	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		31763188	75586352	26	41468										
SCAPER	0	genome.wustl.edu	37	chr15	76763568	76763568	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cataccgtcaactggtgtatCaggaggtccattaagaaggt	11	8	2	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	15	76763568	76763568	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	silent	c.3063	p.L1021	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	58	0	0	120	19	13.67	-	-	-	T	76763568	C	T	76763568	2	4	417	1	0	0	0	0	0	0	0	1	13965	813	29	2		2	SCAPER	15	76763568	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		76763568	25767824	27	41469										
PDILT	0	genome.wustl.edu	37	chr16	20380840	20380840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	atttttactcaggaagctgcGgccaaatttcttgaggcttt	9	8	2	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	20380840	20380840	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1090	p.R364C	0.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	84	0	0	228	64	21.92	-	-	-	A	20380840	G	A	20380840	3	1	417	1	0	0	0	0	1	0	0	0	11747	1116	39	1	684	1	PDILT	16	20380840	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09		20380840	69973913	28	41470										
ATP2A1	0	genome.wustl.edu	37	chr16	28909594	28909594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	cgaccgctgtaactatgtgcGagttggcaccacccgggtgc	13	13	0	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	28909594	28909594	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.1586	p.R529Q	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	40	0	0	47	20	29.85	-	-	-	A	28909594	G	A	28909594	3	1	417	1	0	0	0	0	1	0	0	0	1140	1058	37	1	1640	1	ATP2A1	16	28909594	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	8528754	28909594	61445159	29	41471										
TCF25	0	genome.wustl.edu	37	chr16	89977557	89977557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	gcctgaacaggctgatgctgGctgtgcgcgacatgatggcc	15	11	0	3			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	89977557	89977557	G	T	SNP	TCF25	ENST00000263346	human	ensembl	69_37n	1	known	missense	c.1942	p.A648S	1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	25	0	0	20	4	16.67	-	-	-	T	89977557	G	T	89977557	3	4	417	1	0	0	0	0	1	0	0	0	15788	1203	42	4	2012	4	TCF25	16	89977557	Missense_Mutation	SNP	G	TCGA-AR-A2LN-01A-21D-A18P-09	61067963	89977557	377196	30	41472										
ZCCHC2	0	genome.wustl.edu	37	chr18	60241584	60241584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	gcttgttcctagtcctgttgCtatttctgcaataagggagt	10	8	1	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	18	60241584	60241584	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.2270	p.A757V	0.394	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	41	0	0	82	30	26.79	-	-	-	T	60241584	C	T	60241584	3	4	417	1	0	0	0	0	1	0	0	0	17683	797	28	4	2320	4	ZCCHC2	18	60241584	Missense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		60241584	17835664	31	41473										
PCDH11X	0	genome.wustl.edu	37	chrX	91873605	91873605	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	acttcaccacagcccaccatCagcacaggcctcagccctct	5	20	4	0			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	X	91873605	91873605	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	nonsense	c.3710	p.S1237*	0.151	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	148	0	0	244	68	21.79	-	-	-	A	91873605	C	A	91873605	4	1	417	1	0	0	0	0	0	1	0	0	11581	838	29	2	3858	2	PCDH11X	23	91873605	Nonsense_Mutation	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09		91873605	63396955	32	41474										
MORC4	0	genome.wustl.edu	37	chrX	106228454	106228454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.303030303030303	10	0.00979213994119929	2.83829787234043	NA	2.83829787234043	3.40217058483312e-05	0.0013863845133195	6	tctaggctgggcaatgaatcCtcggtaataatcattttttg	9	7	2	1			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	X	106228454	106228454	C	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	silent	c.546	p.E182	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	44	0	0	88	29	24.79	-	-	-	T	106228454	C	T	106228454	2	4	417	1	0	0	0	0	0	0	0	1	9776	680	24	4		4	MORC4	23	106228454	Silent	SNP	C	TCGA-AR-A2LN-01A-21D-A18P-09	14354849	106228454	49042106	33	41475										
CROCC	0	genome.wustl.edu	37	chr1	17266536	17266536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgccatgcaggcccacgagGacgcccagcgcgaggtgcag	16	15	0	0			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	1	17266536	17266536	G	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.1756	p.D586H	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	13	0	0	11	7	38.89	-	-	-	C	17266536	G	C	17266536	3	2	418	1	0	0	0	0	1	0	0	0	3923	1174	41	2	1806	2	CROCC	1	17266536	Missense_Mutation	SNP	G	TCGA-AR-A2LO-01A-31D-A18P-09		17266536	231984085	1	41476										
RYR2	0	genome.wustl.edu	37	chr1	237897046	237897046	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atatatggcctatgcagataTtatggcaaaggtaaataagt	9	4	0	1			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	1	237897046	237897046	T	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.11075	p.I3692N	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	71	0	0	135	21	13.46	-	-	-	A	237897046	T	A	237897046	3	1	418	1	0	0	0	0	1	0	0	0	13855	1493	52	5	11395	5	RYR2	1	237897046	Missense_Mutation	SNP	T	TCGA-AR-A2LO-01A-31D-A18P-09	220630510	237897046	11353575	2	41477										
KHK	0	genome.wustl.edu	37	chr2	27320515	27320515	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctgtttggctacggagacGtggtgggtgccccattcagc	15	10	1	1			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	2	27320515	27320515	G	T	SNP	KHK	ENST00000260598	human	ensembl	69_37n	1	known	missense	c.562	p.V188L	1.000	pfam_PfkB	pfam_PfkB	-	no_errors	KHK	HGNC	ENSG00000138030	34	0	0	22	5	18.52	-	-	-	T	27320515	G	T	27320515	3	4	418	1	0	0	0	0	1	0	0	0	8201	1145	40	3	719	3	KHK	2	27320515	Missense_Mutation	SNP	G	TCGA-AR-A2LO-01A-31D-A18P-09		27320515	215878858	3	41478										
NEU4	0	genome.wustl.edu	37	chr2	242757547	242757547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgaccacggccgcacctggCgctgtggaggcctcgtgccc	14	16	0	1			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	2	242757547	242757547	C	T	SNP	NEU4	ENST00000325935	human	ensembl	69_37n	1	known	missense	c.667	p.R223C	0.989	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU4	HGNC	ENSG00000204099	17	0	0	28	8	22.22	-	-	-	T	242757547	C	T	242757547	3	4	418	1	0	0	0	0	1	0	0	0	10416	768	27	1	681	1	NEU4	2	242757547	Missense_Mutation	SNP	C	TCGA-AR-A2LO-01A-31D-A18P-09	215437032	242757547	441826	4	41479										
CEP63	0	genome.wustl.edu	37	chr3	134266281	134266281	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tacccatactagtgaggaccTtctgcaggcagaggtgactt	11	10	1	3			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	3	134266281	134266281	T	G	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	missense	c.1034	p.L345R	0.880	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	57	0	0	46	11	19.3	-	-	-	G	134266281	T	G	134266281	3	3	418	1	0	0	0	0	1	0	0	0	3286	1609	56	5	1064	5	CEP63	3	134266281	Missense_Mutation	SNP	T	TCGA-AR-A2LO-01A-31D-A18P-09		134266281	63756149	5	41480										
ECE2	0	genome.wustl.edu	37	chr3	183994997	183995000	+	Frame_Shift_Del	DEL	GACT	GACT	-													0	0	1	0	0	0	1	1	0	ttgcctcttccagacagacaGactgacagtctcctaccctc							TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	GACT	GACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	3	183994997	183995000	GACT	-	DEL	ECE2	ENST00000422932	human	ensembl	69_37n	1	known	frame_shift_del	c.199_202	p.D67fs	0.000:0.000:0.000:0.008	NULL	NULL	-	no_errors	ECE2	HGNC	ENSG00000145194	36	0	0	30	9	23.08	-	-	-	-	183995000	GACT	-	183994997	7	5	418	1	0	1	0	1	0	0	0	0	4925	957	33	0		0	ECE2	3	183994997	Frame_Shift_Del	DEL	GACT	TCGA-AR-A2LO-01A-31D-A18P-09	49728716	183994997	14027433	6	41481										
RB1CC1	0	genome.wustl.edu	37	chr8	53588958	53588958	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttaacttgatgtcttctatGgactgcagataatttgaata	7	5	2	3			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	8	53588958	53588958	G	T	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.543	p.S181	0.995	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	37	0	0	40	6	13.04	-	-	-	T	53588958	G	T	53588958	2	4	418	1	0	0	0	0	0	0	0	1	13182	1335	47	4		4	RB1CC1	8	53588958	Silent	SNP	G	TCGA-AR-A2LO-01A-31D-A18P-09		53588958	92775064	7	41482										
COL5A1	0	genome.wustl.edu	37	chr9	137622088	137622088	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccttggctcccaggagctgAccccgacccccacggaagct	10	18	0	1			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	9	137622088	137622088	A	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.931	p.T311S	0.713	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	19	0	0	11	7	38.89	-	-	-	T	137622088	A	T	137622088	3	4	418	1	0	0	0	0	1	0	0	0	3726	275	10	5	957	5	COL5A1	9	137622088	Missense_Mutation	SNP	A	TCGA-AR-A2LO-01A-31D-A18P-09		137622088	3591343	8	41483										
TRPM5	0	genome.wustl.edu	37	chr11	2434365	2434365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggccctgtgcctcgcaccGgctctgcaggccatacagcg	12	17	1	0			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	11	2434365	2434365	G	A	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2101	p.R701W	0.001	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	27	0	0	9	5	35.71	-	-	-	A	2434365	G	A	2434365	3	1	418	1	0	0	0	0	1	0	0	0	16685	1130	39	1	1446	1	TRPM5	11	2434365	Missense_Mutation	SNP	G	TCGA-AR-A2LO-01A-31D-A18P-09		2434365	132572151	9	41484										
ROBO4	0	genome.wustl.edu	37	chr11	124764141	124764141	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgggctccccagctccagcaCcagtgactgcagccacttgc	10	17	0	1			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	11	124764141	124764141	C	A	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.1274	p.G425V	0.561	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	38	0	0	28	9	24.32	-	-	-	A	124764141	C	A	124764141	3	1	418	1	0	0	0	0	1	0	0	0	13602	507	18	4	1793	4	ROBO4	11	124764141	Missense_Mutation	SNP	C	TCGA-AR-A2LO-01A-31D-A18P-09	122329776	124764141	10242375	10	41485										
KIF16B	0	genome.wustl.edu	37	chr20	16359706	16359706	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctcactttttcctcctgacGtgcaatgttggcagtgaatt	8	11	1	2			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	20	16359706	16359706	G	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.2941	p.R981G	0.983	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	99	0	0	101	27	21.09	-	-	-	C	16359706	G	C	16359706	3	2	418	1	0	0	0	0	1	0	0	0	8330	1145	40	3	1044	3	KIF16B	20	16359706	Missense_Mutation	SNP	G	TCGA-AR-A2LO-01A-31D-A18P-09		16359706	46665814	11	41486										
ZXDB	0	genome.wustl.edu	37	chrX	57620700	57620700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cacagatgctctgactccttCgagcaccctttgtgaaaaca	7	13	1	3			TCGA-AR-A2LO-01A-31D-A18P-09	TCGA-AR-A2LO-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c65887cd-2df3-46ac-9787-f1ad62279055	67693f81-bf05-4221-ba0b-3a4ce2217bf3	X	57620700	57620700	C	T	SNP	ZXDB	ENST00000374888	human	ensembl	69_37n	1	known	missense	c.2219	p.S740L	0.955	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	88	0	0	61	25	29.07	-	-	-	T	57620700	C	T	57620700	3	4	418	1	0	0	0	0	1	0	0	0	18342	893	31	1	2221	1	ZXDB	23	57620700	Missense_Mutation	SNP	C	TCGA-AR-A2LO-01A-31D-A18P-09		57620700	97649860	12	41487										
SSBP3	0	genome.wustl.edu	37	chr1	54722851	54722851	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgcctgcgtatcgcggtgaCataaaaggctgcaattatag	11	10	0	1			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	1	54722851	54722851	C	A	SNP	SSBP3	ENST00000371320	human	ensembl	69_37n	-1	known	missense	c.456	p.M152I	1.000	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216	42	0	0	25	4	13.79	-	-	-	A	54722851	C	A	54722851	3	1	419	1	0	0	0	0	1	0	0	0	15272	478	17	4	758	4	SSBP3	1	54722851	Missense_Mutation	SNP	C	TCGA-AR-A2LQ-01A-22D-A18P-09		54722851	194527770	1	41488										
YTHDC1	0	genome.wustl.edu	37	chr4	69204039	69204039	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgttcactctctggattaTacagttcatcatcttgttct	5	10	6	0			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	4	69204039	69204039	T	C	SNP	YTHDC1	ENST00000344157	human	ensembl	69_37n	-1	known	missense	c.92	p.Y31C	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896	69	0	0	84	11	11.58	-	-	-	C	69204039	T	C	69204039	3	2	419	1	0	0	0	0	1	0	0	0	17593	1406	49	5	2155	5	YTHDC1	4	69204039	Missense_Mutation	SNP	T	TCGA-AR-A2LQ-01A-22D-A18P-09		69204039	121950237	2	41489										
FADS6	0	genome.wustl.edu	37	chr17	72889676	72889676	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgggctccgtaggttccatGggctccgtgggttccatgga	15	10	0	0			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	17	72889676	72889676	G	C	SNP	FADS6	ENST00000310226	human	ensembl	69_37n	-1	known	silent	c.18	p.P6	0.027	NULL	pfam_Fatty_acid_desaturase-1	-	no_errors	FADS6	HGNC	ENSG00000172782	13	0	0	13	5	27.78	-	-	-	C	72889676	G	C	72889676	2	2	419	1	0	0	0	0	0	0	0	1	5408	1335	47	4		4	FADS6	17	72889676	Silent	SNP	G	TCGA-AR-A2LQ-01A-22D-A18P-09		72889676	8305534	3	41490										
DGCR14	0	genome.wustl.edu	37	chr22	19121812	19121812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcgtgtggcagagccaggcGccggtgtgcttgtgggggtc	20	9	0	1			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	22	19121812	19121812	G	A	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.1328	p.A443V	0.165	NULL	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	95	0	0	107	12	10.08	-	-	-	A	19121812	G	A	19121812	3	1	419	1	0	0	0	0	1	0	0	0	4496	1087	38	1	106	1	DGCR14	22	19121812	Missense_Mutation	SNP	G	TCGA-AR-A2LQ-01A-22D-A18P-09		19121812	32182754	4	41491										
MASP2	0	genome.wustl.edu	37	chr1	11106966	11106966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	accttgacgaagtcgtactcGcagaggtgggagagctccag	14	10	0	3			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	11106966	11106966	G	A	SNP	MASP2	ENST00000400897	human	ensembl	69_37n	-1	known	silent	c.216	p.C72	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	49	0	0	9	11	55	-	-	-	A	11106966	G	A	11106966	2	1	420	1	0	0	0	0	0	0	0	1	9394	1079	38	1		1	MASP2	1	11106966	Silent	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		11106966	238143655	1	41492										
PTAFR	0	genome.wustl.edu	37	chr1	28477350	28477350	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	atcaagaagagcatgtccgcCatggtgaggttcaccatgaa	11	9	2	4			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	28477350	28477350	C	G	SNP	PTAFR	ENST00000305392	human	ensembl	69_37n	-1	known	missense	c.183	p.M61I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_PAF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	PTAFR	HGNC	ENSG00000169403	89	0	0	42	11	20.75	-	-	-	G	28477350	C	G	28477350	3	3	420	1	0	0	0	0	1	0	0	0	12803	594	21	4	849	4	PTAFR	1	28477350	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	17370384	28477350	220773271	2	41493										
CCDC18	0	genome.wustl.edu	37	chr1	93671144	93671144	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	aaaaggctacaagaaaggtgTggtctatataaaagtgaact	10	4	1	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	93671144	93671144	T	G	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	missense	c.1227	p.C409W	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	56	0	0	24	13	35.14	-	-	-	G	93671144	T	G	93671144	3	3	420	1	0	0	0	0	1	0	0	0	2820	1702	59	5	1257	5	CCDC18	1	93671144	Missense_Mutation	SNP	T	TCGA-AR-A2LR-01A-12D-A18P-09	65193794	93671144	155579477	3	41494										
NR5A2	0	genome.wustl.edu	37	chr1	200143150	200143150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tccaggaacaagtcaatgccGccctgctggactacacaatg	9	13	1	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	200143150	200143150	G	A	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.1438	p.A480T	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	24	0	0	12	4	25	-	-	-	A	200143150	G	A	200143150	3	1	420	1	0	0	0	0	1	0	0	0	10709	1087	38	1	1468	1	NR5A2	1	200143150	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	106472006	200143150	49107471	4	41495										
FLVCR1	0	genome.wustl.edu	37	chr1	213046085	213046085	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ctcttcaagacagtccccctGaagagtactcctataagaaa	6	12	2	4			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	213046085	213046085	G	A	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	1	known	missense	c.949	p.E317K	0.921	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	81	0	0	54	12	17.91	-	-	-	A	213046085	G	A	213046085	3	1	420	1	0	0	0	0	1	0	0	0	5991	1291	45	2	959	2	FLVCR1	1	213046085	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	12902935	213046085	36204536	5	41496										
SMYD1	0	genome.wustl.edu	37	chr2	88396186	88396186	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tcctatattgacttcctcaaCgttagtgaagaacgcaagag	8	9	1	4			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	88396186	88396186	C	A	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	missense	c.771	p.N257K	0.010	smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	26	0	0	17	7	29.17	-	-	-	A	88396186	C	A	88396186	3	1	420	1	0	0	0	0	1	0	0	0	14910	535	19	3	793	3	SMYD1	2	88396186	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		88396186	154803187	6	41497										
RANBP2	0	genome.wustl.edu	37	chr2	109380159	109380159	+	Missense_Mutation	SNP	C	C	T													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	accacaggttgtgacacagcCccctcctgcagcttacagta							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	109380159	109380159	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.3164	p.P1055L	0.773	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	49	0	0	10	6	37.5	-	-	-	T	109380159	C	T	109380159	3	4	420	1	0	0	0	0	1	0	0	0	13111	623	22	4	3242	4	RANBP2	2	109380159	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	20983973	109380159	133819214	7	41498	338	2								
RANBP2	0	genome.wustl.edu	37	chr2	109380160	109380160	+	Silent	SNP	C	C	A													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ccacaggttgtgacacagccCcctcctgcagcttacagtaa							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	109380160	109380160	C	A	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	silent	c.3165	p.P1055	0.030	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	48	0	0	10	5	33.33	-	-	-	A	109380160	C	A	109380160	2	1	420	1	0	0	0	0	0	0	0	1	13111	610	22	4		4	RANBP2	2	109380160	Silent	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	1	109380160	133819213	8	41499	338	2								
CHCHD5	0	genome.wustl.edu	37	chr2	113343586	113343586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ggtcaccgctcgctactgtgGccgggagctggagcagtatg	16	11	1	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	113343586	113343586	G	A	SNP	CHCHD5	ENST00000324913	human	ensembl	69_37n	1	known	missense	c.38	p.G13D	0.970	NULL	pfam_CHCH	-	no_errors	CHCHD5	HGNC	ENSG00000125611	75	0	0	24	14	36.84	-	-	-	A	113343586	G	A	113343586	3	1	420	1	0	0	0	0	1	0	0	0	3348	1203	42	4	44	4	CHCHD5	2	113343586	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	3963426	113343586	129855787	9	41500										
CSRNP3	0	genome.wustl.edu	37	chr2	166514344	166514344	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	agttgtgtcaccgtgtactaCttcaccaggaggcaaggctt	11	10	2	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	166514344	166514344	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	silent	c.222	p.Y74	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	32	0	0	16	5	23.81	-	-	-	T	166514344	C	T	166514344	2	4	420	1	0	0	0	0	0	0	0	1	3997	576	20	4		4	CSRNP3	2	166514344	Silent	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	53170758	166514344	76685029	10	41501										
SLC23A3	0	genome.wustl.edu	37	chr2	220029949	220029949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	atgcagtgcccatggggcttCccagcagcccggccagcaca	12	16	0	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	220029949	220029949	C	T	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.1133	p.G378E	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	23	0	0	4	7	63.64	-	-	-	T	220029949	C	T	220029949	3	4	420	1	0	0	0	0	1	0	0	0	14553	855	30	2	743	2	SLC23A3	2	220029949	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	53515605	220029949	23169424	11	41502										
OBSL1	0	genome.wustl.edu	37	chr2	220428132	220428132	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ccagcgacgcactgaaactcGcccccgtctgagggctgggt	13	15	1	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	220428132	220428132	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.2625	p.G875	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	40	0	0	14	9	37.5	-	-	-	A	220428132	G	A	220428132	2	1	420	1	0	0	0	0	0	0	0	1	10886	1074	38	1		1	OBSL1	2	220428132	Silent	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	398183	220428132	22771241	12	41503										
PRKAR2A	0	genome.wustl.edu	37	chr3	48802461	48802461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gtgattatgcgttctccatcCttatagatcttctctcctat	5	11	3	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	3	48802461	48802461	C	T	SNP	PRKAR2A	ENST00000438535	human	ensembl	69_37n	-1	putative	missense	c.154	p.G52R	0.999	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKAR2A	HGNC	ENSG00000114302	93	0	0	21	10	32.26	-	-	-	T	48802461	C	T	48802461	3	4	420	1	0	0	0	0	1	0	0	0	12586	680	24	4	381	4	PRKAR2A	3	48802461	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		48802461	149219969	13	41504										
TSC22D2	0	genome.wustl.edu	37	chr3	150128829	150128829	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gggctgcccttagcgccaggCacacacagcgcaccaacaag	11	16	0	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	3	150128829	150128829	C	G	SNP	TSC22D2	ENST00000480589	human	ensembl	69_37n	1	putative	missense	c.74	p.A25G	0.866	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSC22D2	HGNC	ENSG00000196428	50	0	0	18	9	33.33	-	-	-	G	150128829	C	G	150128829	3	3	420	1	0	0	0	0	1	0	0	0	16704	697	25	4	1694	4	TSC22D2	3	150128829	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	101326368	150128829	47893601	14	41505										
MANBA	0	genome.wustl.edu	37	chr4	103556107	103556107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	agcaattcagacactggctcCtcataaaggcagacagcctc	8	13	2	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	4	103556107	103556107	C	T	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	silent	c.2253	p.E751	0.187	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	47	0	0	31	17	35.42	-	-	-	T	103556107	C	T	103556107	2	4	420	1	0	0	0	0	0	0	0	1	9290	680	24	4		4	MANBA	4	103556107	Silent	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		103556107	87598169	15	41506										
TRIO	0	genome.wustl.edu	37	chr5	14358322	14358322	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gaggagctgcagaaggagctGctggacgacgtgtatgccga	17	8	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	5	14358322	14358322	G	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.2082	p.L694	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	43	0	0	19	13	40.62	-	-	-	T	14358322	G	T	14358322	2	4	420	1	0	0	0	0	0	0	0	1	16648	1306	46	4		4	TRIO	5	14358322	Silent	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		14358322	166556938	16	41507										
ERAP2	0	genome.wustl.edu	37	chr5	96244775	96244775	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ttacttggaatcgttttaccAcatgatggacagaaggaata	9	6	0	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	5	96244775	96244775	A	G	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	missense	c.2123	p.H708R	0.996	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	70	0	0	19	12	38.71	-	-	-	G	96244775	A	G	96244775	3	3	420	1	0	0	0	0	1	0	0	0	5241	159	6	5	2173	5	ERAP2	5	96244775	Missense_Mutation	SNP	A	TCGA-AR-A2LR-01A-12D-A18P-09	81886453	96244775	84670485	17	41508										
GRIK2	0	genome.wustl.edu	37	chr6	102266342	102266342	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cttatccaatcgttctttgaTtgttaccaccattttggtaa	5	9	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	6	102266342	102266342	T	A	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.1301	p.I434N	0.988	smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	141	0	0	70	17	19.54	-	-	-	A	102266342	T	A	102266342	3	1	420	1	0	0	0	0	1	0	0	0	6825	1493	52	5	1335	5	GRIK2	6	102266342	Missense_Mutation	SNP	T	TCGA-AR-A2LR-01A-12D-A18P-09		102266342	68848725	18	41509										
SLC29A4	0	genome.wustl.edu	37	chr7	5330800	5330800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cctcacctacatcttggtggCactggcagctgtcctcctga	9	15	2	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	5330800	5330800	C	T	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	1	known	missense	c.347	p.A116V	0.998	superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	89	0	0	21	9	29.03	-	-	-	T	5330800	C	T	5330800	3	4	420	1	0	0	0	0	1	0	0	0	14626	710	25	4	357	4	SLC29A4	7	5330800	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		5330800	153807863	19	41510										
COBL	0	genome.wustl.edu	37	chr7	51095731	51095731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cagatgtgtgtggagggggtGggtctgtaccatcaggtgcg	19	6	2	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	51095731	51095731	G	A	SNP	COBL	ENST00000395542	human	ensembl	69_37n	-1	known	missense	c.3308	p.P1103L	0.000	NULL	pfam_Cordon-bleu_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	67	0	0	9	33	78.57	-	-	-	A	51095731	G	A	51095731	3	1	420	1	0	0	0	0	1	0	0	0	3683	1348	47	4	739	4	COBL	7	51095731	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	45764931	51095731	108042932	20	41511										
EGFR	0	genome.wustl.edu	37	chr7	55211097	55211097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tcagaggaaatatgtactacGaaaattcctatgccttagca	7	8	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	55211097	55211097	G	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	missense	c.340	p.E114K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	69	0	0	29	13	30.95	-	-	-	A	55211097	G	A	55211097	3	1	420	1	0	0	0	0	1	0	0	0	5002	1059	37	1	350	1	EGFR	7	55211097	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	4115366	55211097	103927566	21	41512										
CLEC5A	0	genome.wustl.edu	37	chr7	141631601	141631601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	agccaataaaatacttctcaGcatcagttatgtcctgaaga	6	9	2	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	141631601	141631601	G	A	SNP	CLEC5A	ENST00000546910	human	ensembl	69_37n	-1	known	missense	c.371	p.A124V	0.062	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC5A	HGNC	ENSG00000258227	66	0	0	42	15	26.32	-	-	-	A	141631601	G	A	141631601	3	1	420	1	0	0	0	0	1	0	0	0	3549	971	34	4	203	4	CLEC5A	7	141631601	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	86420504	141631601	17507062	22	41513										
TNFRSF10B	0	genome.wustl.edu	37	chr8	22880477	22880477	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gggcaccaagtctgcaaagtCatcgaagcactgtctcagag	11	11	3	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	22880477	22880477	C	A	SNP	TNFRSF10B	ENST00000276431	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344Y	0.000	pfam_Death,superfamily_DEATH-like,smart_Death,pirsf_TNFR_10	pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pirsf_TNFR_10,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10	-	no_errors	TNFRSF10B	HGNC	ENSG00000120889	25	0	0	3	7	70	-	-	-	A	22880477	C	A	22880477	3	1	420	1	0	0	0	0	1	0	0	0	16376	826	29	2	296	2	TNFRSF10B	8	22880477	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		22880477	123483545	23	41514										
SNTG1	0	genome.wustl.edu	37	chr8	51363130	51363130	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tcacagcggaactttcaggaCtactttttattggagatgca	9	8	2	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	51363130	51363130	C	A	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	1	known	missense	c.292	p.L98I	0.995	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	158	0	0	92	40	30.08	-	-	-	A	51363130	C	A	51363130	3	1	420	1	0	0	0	0	1	0	0	0	14963	564	20	4	310	4	SNTG1	8	51363130	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	28482653	51363130	95000892	24	41515										
RB1CC1	0	genome.wustl.edu	37	chr8	53586673	53586673	+	Frame_Shift_Del	DEL	T	T	-													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cgttagttgttctaggcataTcaggagagagcaccagttca							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586673	53586673	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	frame_shift_del	c.734	p.D245fs	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	124	0	0	68	18	20.69	-	-	-	-	53586673	T	-	53586673	7	5	420	1	0	1	0	1	0	0	0	0	13182	1435	50	0	4122	0	RB1CC1	8	53586673	Frame_Shift_Del	DEL	T	TCGA-AR-A2LR-01A-12D-A18P-09	2223543	53586673	92777349	25	41516	339	3								
RB1CC1	0	genome.wustl.edu	37	chr8	53586674	53586674	+	Missense_Mutation	SNP	C	C	G													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gttagttgttctaggcatatCaggagagagcaccagttcag							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586674	53586674	C	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.733	p.D245H	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	129	0	0	68	21	23.6	-	-	-	G	53586674	C	G	53586674	3	3	420	1	0	0	0	0	1	0	0	0	13182	826	29	2	4123	2	RB1CC1	8	53586674	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	1	53586674	92777348	26	41517	339	3								
RB1CC1	0	genome.wustl.edu	37	chr8	53586675	53586675	+	Silent	SNP	A	A	G													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ttagttgttctaggcatatcAggagagagcaccagttcagt							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586675	53586675	A	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.732	p.P244	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	129	0	0	69	21	23.33	-	-	-	G	53586675	A	G	53586675	2	3	420	1	0	0	0	0	0	0	0	1	13182	175	7	5		5	RB1CC1	8	53586675	Silent	SNP	A	TCGA-AR-A2LR-01A-12D-A18P-09	1	53586675	92777347	27	41518	339	3								
KCNV1	0	genome.wustl.edu	37	chr8	110984916	110984916	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ctggcgaacagtgggacaagGtccttgggagaagtcctgtt	15	8	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	110984916	110984916	G	T	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.562	p.P188T	0.821	prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv4	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	125	0	0	66	41	38.32	-	-	-	T	110984916	G	T	110984916	3	4	420	1	0	0	0	0	1	0	0	0	8148	1261	44	4	948	4	KCNV1	8	110984916	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	57398241	110984916	35379106	28	41519										
KIAA1958	0	genome.wustl.edu	37	chr9	115408031	115408031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	caaatactaccaaagccacgCggtacgccttgaatgtgtgg	10	11	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	9	115408031	115408031	C	T	SNP	KIAA1958	ENST00000536272	human	ensembl	69_37n	1	known	missense	c.1357	p.R453W	0.152	superfamily_Integrase_Lambda-type_N	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	50	0	0	38	10	20.83	-	-	-	T	115408031	C	T	115408031	3	4	420	1	0	0	0	0	1	0	0	0	8316	759	27	1	1279	1	KIAA1958	9	115408031	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		115408031	25805400	29	41520										
NOTCH1	0	genome.wustl.edu	37	chr9	139390623	139390623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	agacgttggaatgcggggacGagctggaccactggtcaggg	18	8	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	9	139390623	139390623	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.7568	p.S2523L	0.998	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	27	0	0	7	15	68.18	-	-	-	A	139390623	G	A	139390623	3	1	420	1	0	0	0	0	1	0	0	0	10619	1059	37	1	103	1	NOTCH1	9	139390623	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	23982592	139390623	1822808	30	41521										
ADARB2	0	genome.wustl.edu	37	chr10	1284297	1284297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cagcccctggtcactgaggtGctcgccgctgatgcacttgg	13	14	1	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	10	1284297	1284297	G	T	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	missense	c.1258	p.H420N	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	15	0	0	7	7	50	-	-	-	T	1284297	G	T	1284297	3	4	420	1	0	0	0	0	1	0	0	0	283	1319	46	4	985	4	ADARB2	10	1284297	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		1284297	134250450	31	41522										
C10orf120	0	genome.wustl.edu	37	chr10	124457832	124457833	+	Frame_Shift_Ins	INS	-	-	T													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	aatcacctttgctgtccataINSttttttctaggggtacacaa							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	10	124457832	124457833	-	T	INS	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	frame_shift_ins	c.425_424	p.I142fs	0.224:0.144	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	88	0	0	10	12	54.55	-	-	-	T	124457833	-	T	124457832	7	5	420	1	0	1	1	0	0	0	0	0	1600	449	16	0	586	0	C10orf120	10	124457832	Frame_Shift_Ins	INS	-	TCGA-AR-A2LR-01A-12D-A18P-09	123173535	124457832	11076915	32	41523										
OR51Q1	0	genome.wustl.edu	37	chr11	5443794	5443794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ctgtcctcctggctatgtccGttgactgctatgtggccatc	10	13	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	5443794	5443794	G	A	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	missense	c.364	p.V122I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	109	0	0	46	18	28.12	-	-	-	A	5443794	G	A	5443794	3	1	420	1	0	0	0	0	1	0	0	0	11177	1145	40	1	366	1	OR51Q1	11	5443794	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		5443794	129562722	33	41524										
CKAP5	0	genome.wustl.edu	37	chr11	46804907	46804907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ggattcttttgtgagaaagcCattgacacaacctgaaaagg	10	7	1	3			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	46804907	46804907	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.2166	p.M722I	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	105	0	0	41	18	30.51	-	-	-	T	46804907	C	T	46804907	3	4	420	1	0	0	0	0	1	0	0	0	3475	594	21	4	4040	4	CKAP5	11	46804907	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	41361113	46804907	88201609	34	41525										
DHCR7	0	genome.wustl.edu	37	chr11	71146439	71146439	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ccttagaagattccaggcagCaggcggtaaggcactgcggc	14	11	0	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	71146439	71146439	C	A	SNP	DHCR7	ENST00000355527	human	ensembl	69_37n	-1	known	silent	c.1410	p.L470	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893	11	0	0	10	4	28.57	-	-	-	A	71146439	C	A	71146439	2	1	420	1	0	0	0	0	0	0	0	1	4513	697	25	4		4	DHCR7	11	71146439	Silent	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	24341532	71146439	63860077	35	41526										
CACNA1C	0	genome.wustl.edu	37	chr12	2800273	2800273	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	acgcggggcaggaccgagccGggggcgaagaggacgcgggc	22	11	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	2800273	2800273	G	C	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.6538	p.G2180R	0.687	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	58	0	0	25	18	41.86	-	-	-	C	2800273	G	C	2800273	3	2	420	1	0	0	0	0	1	0	0	0	2565	1116	39	3	7220	3	CACNA1C	12	2800273	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		2800273	131051622	36	41527										
TBX3	0	genome.wustl.edu	37	chr12	115112047	115112047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ggacagtccctgcgccgcagCggcagaggccatggccgtgg	17	14	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	115112047	115112047	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.1693	p.A565T	0.129	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	39	0	0	0	11	91.67	-	-	-	T	115112047	C	T	115112047	3	4	420	1	0	0	0	0	1	0	0	0	15754	768	27	1	546	1	TBX3	12	115112047	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	112311774	115112047	18739848	37	41528										
TMEM132B	0	genome.wustl.edu	37	chr12	125834062	125834062	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tcgctccctgcttacctcccCacgaacttgcacatctccaa	4	19	1	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	125834062	125834062	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	silent	c.117	p.P39	0.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	60	0	0	17	11	39.29	-	-	-	A	125834062	C	A	125834062	2	1	420	1	0	0	0	0	0	0	0	1	16141	581	21	4		4	TMEM132B	12	125834062	Silent	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	10722015	125834062	8017833	38	41529										
XPO4	0	genome.wustl.edu	37	chr13	21417184	21417184	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gaagatctgacgaaggtcttCttcctatagtcaataaatca	7	8	5	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	13	21417184	21417184	C	T	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.577	p.E193K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	28	0	0	14	11	44	-	-	-	T	21417184	C	T	21417184	3	4	420	1	0	0	0	0	1	0	0	0	17543	922	32	2	2950	2	XPO4	13	21417184	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		21417184	93752694	39	41530										
MAGEL2	0	genome.wustl.edu	37	chr15	23889634	23889634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cttgttgatgataatataggCgtggtttttggtatcaattt	10	3	1	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	15	23889634	23889634	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.1447	p.A483T	0.008	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	83	0	0	6	16	72.73	-	-	-	T	23889634	C	T	23889634	3	4	420	1	0	0	0	0	1	0	0	0	9260	768	27	1	497	1	MAGEL2	15	23889634	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		23889634	78641758	40	41531										
MAN2C1	0	genome.wustl.edu	37	chr15	75652054	75652054	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gaggaggccctcaggacctgGctccccagcacacagggctg	14	15	1	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	15	75652054	75652054	G	C	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	missense	c.1855	p.P619A	0.996	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	68	0	0	30	9	23.08	-	-	-	C	75652054	G	C	75652054	3	2	420	1	0	0	0	0	1	0	0	0	9289	1203	42	4	1311	4	MAN2C1	15	75652054	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	51762420	75652054	26879338	41	41532										
PKD1	0	genome.wustl.edu	37	chr16	2158582	2158582	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cgctgggcgccccggccgctGgcagctggcggtgcgataca	17	15	0	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	2158582	2158582	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	nonsense	c.6586	p.Q2196*	0.859	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	9	0	0	3	4	57.14	-	-	-	A	2158582	G	A	2158582	4	1	420	1	0	0	0	0	0	1	0	0	12037	1357	47	4	6453	4	PKD1	16	2158582	Nonsense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		2158582	88196171	42	41533										
NUDT16L1	0	genome.wustl.edu	37	chr16	4744071	4744071	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gacggcctgaaccgggtgctGggcctgggcctgggctgcct	18	13	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	4744071	4744071	G	C	SNP	NUDT16L1	ENST00000590460	human	ensembl	69_37n	1	novel	missense	c.206	p.W69S	1.000	superfamily_NUDIX_hydrolase_dom-like	superfamily_NUDIX_hydrolase_dom-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUDT16L1	HGNC	ENSG00000168101	11	0	0	3	4	57.14	-	-	-	C	4744071	G	C	4744071	3	2	420	1	0	0	0	0	1	0	0	0	10806	1335	47	4	252	4	NUDT16L1	16	4744071	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	2585489	4744071	85610682	43	41534										
ACSM2B	0	genome.wustl.edu	37	chr16	20565132	20565132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tggccttgaggcccaggctcGagtaggaatgttctgccatc	13	11	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	20565132	20565132	G	A	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	missense	c.707	p.S236L	0.001	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	73	0	0	20	12	37.5	-	-	-	A	20565132	G	A	20565132	3	1	420	1	0	0	0	0	1	0	0	0	184	1059	37	1	1066	1	ACSM2B	16	20565132	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	15821061	20565132	69789621	44	41535										
SRCAP	0	genome.wustl.edu	37	chr16	30733941	30733941	+	Frame_Shift_Del	DEL	C	C	-													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ccatctcatcagccagcctgCccatgtggccctcatccagg							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	30733941	30733941	C	-	DEL	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	frame_shift_del	c.3764	p.H1256fs	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	33	0	0	10	13	54.17	-	-	-	-	30733941	C	-	30733941	7	5	420	1	0	1	0	1	0	0	0	0	15226	739	26	0	3846	0	SRCAP	16	30733941	Frame_Shift_Del	DEL	C	TCGA-AR-A2LR-01A-12D-A18P-09	10168809	30733941	59620812	45	41536										
MED31	0	genome.wustl.edu	37	chr17	6554834	6554834	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tactcacctgtctccatagcGacagcagcggccataacaaa	7	14	2	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	6554834	6554834	G	C	SNP	MED31	ENST00000225728	human	ensembl	69_37n	-1	known	silent	c.15	p.V5	1.000	NULL	pfam_Mediator_Med31	-	no_errors	MED31	HGNC	ENSG00000108590	49	0	0	10	13	56.52	-	-	-	C	6554834	G	C	6554834	2	2	420	1	0	0	0	0	0	0	0	1	9520	1045	37	3		3	MED31	17	6554834	Silent	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		6554834	74640376	46	41537										
TP53	0	genome.wustl.edu	37	chr17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cggttcatgccgcccatgcaGgaactgttacacatgtagtt							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	59	0	0	4	14	77.78	-	-	-	-	7577558	G	-	7577558	7	5	420	1	0	1	0	1	0	0	0	0	16477	987	35	0	567	0	TP53	17	7577558	Frame_Shift_Del	DEL	G	TCGA-AR-A2LR-01A-12D-A18P-09	1022724	7577558	73617652	47	41538										
ITGA3	0	genome.wustl.edu	37	chr17	48156481	48156481	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ctggtgggcctggggaccctGgtcctaggtctggagtggcc	18	11	1	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	48156481	48156481	G	T	SNP	ITGA3	ENST00000320031	human	ensembl	69_37n	1	known	silent	c.2442	p.L814	0.998	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	67	0	0	4	34	89.47	-	-	-	T	48156481	G	T	48156481	2	4	420	1	0	0	0	0	0	0	0	1	7931	1335	47	4		4	ITGA3	17	48156481	Silent	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	40578923	48156481	33038729	48	41539										
BAHCC1	0	genome.wustl.edu	37	chr17	79409977	79409977	+	Frame_Shift_Del	DEL	C	C	-													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ggcaaggaagccccggccggCcccccaggggcacagaaggt							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	79409977	79409977	C	-	DEL	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	frame_shift_del	c.1602	p.P536fs	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	21	0	0	9	2	18.18	-	-	-	-	79409977	C	-	79409977	7	5	420	1	0	1	0	1	0	0	0	0	1300	726	26	0	1451	0	BAHCC1	17	79409977	Frame_Shift_Del	DEL	C	TCGA-AR-A2LR-01A-12D-A18P-09	31253496	79409977	1785233	49	41540										
P4HB	0	genome.wustl.edu	37	chr17	79803835	79803835	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ttgacaggctgcttgtcccaGtcctccggcagctcctggct	11	15	0	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	79803835	79803835	G	C	SNP	P4HB	ENST00000331483	human	ensembl	69_37n	-1	known	missense	c.1089	p.D363E	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624	50	0	0	14	10	41.67	-	-	-	C	79803835	G	C	79803835	3	2	420	1	0	0	0	0	1	0	0	0	11432	1020	36	4	453	4	P4HB	17	79803835	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09	393858	79803835	1391375	50	41541										
L3MBTL4	0	genome.wustl.edu	37	chr18	6171943	6171946	+	Splice_Site	DEL	TGTT	TGTT	-													0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	cccaaccatcaaaatgaaccTgttaaaacgagttttgaatg							TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	18	6171943	6171946	TGTT	-	DEL	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	splice_site_del	c.982-5_982-2	e11-2	1.000:0.998:0.859:0.001	-	-	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	48	0	0	25	7	21.88	-	-	-	-	6171946	TGTT	-	6171943	8	5	420	1	0	1	0	1	0	0	1	0	8648	1594	55	0	923	0	L3MBTL4	18	6171943	Splice_Site	DEL	TGTT	TCGA-AR-A2LR-01A-12D-A18P-09		6171943	71905305	51	41542										
DOT1L	0	genome.wustl.edu	37	chr19	2191091	2191091	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	catatcctgcagcaggtctaCaaccactcggtgaccgaccc	8	16	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	19	2191091	2191091	C	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	nonsense	c.345	p.Y115*	0.999	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	60	0	0	4	10	71.43	-	-	-	A	2191091	C	A	2191091	4	1	420	1	0	0	0	0	0	1	0	0	4744	489	17	4	363	4	DOT1L	19	2191091	Nonsense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		2191091	56937892	52	41543										
OPA3	0	genome.wustl.edu	37	chr19	46087903	46087903	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tgagccggcgggaggcagatAtaggtcttgaagaactcgct	15	8	1	4			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	19	46087903	46087903	A	G	SNP	OPA3	ENST00000323060	human	ensembl	69_37n	-1	known	silent	c.120	p.Y40	1.000	pfam_OPA3-like	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741	41	0	0	24	9	27.27	-	-	-	G	46087903	A	G	46087903	2	3	420	1	0	0	0	0	0	0	0	1	10945	456	16	5		5	OPA3	19	46087903	Silent	SNP	A	TCGA-AR-A2LR-01A-12D-A18P-09	43896812	46087903	13041080	53	41544										
HM13	0	genome.wustl.edu	37	chr20	30115323	30115323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	ctgaaacaatcaccagccggGatgccgcccgcttccccatc	8	18	1	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	20	30115323	30115323	G	A	SNP	HM13	ENST00000398174	human	ensembl	69_37n	1	known	missense	c.220	p.D74N	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	HM13	HGNC	ENSG00000101294	101	0	0	6	16	72.73	-	-	-	A	30115323	G	A	30115323	3	1	420	1	0	0	0	0	1	0	0	0	7268	1174	41	2	226	2	HM13	20	30115323	Missense_Mutation	SNP	G	TCGA-AR-A2LR-01A-12D-A18P-09		30115323	32910197	54	41545										
RIMBP3	0	genome.wustl.edu	37	chr22	20458076	20458076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	caagagtgtgtcgaaggtgaCggtggaggacatagttcccc	15	8	0	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	22	20458076	20458076	C	T	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	missense	c.3226	p.V1076I	0.003	superfamily_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	160	0	0	84	19	18.45	-	-	-	T	20458076	C	T	20458076	3	4	420	1	0	0	0	0	1	0	0	0	13448	536	19	1	1697	1	RIMBP3	22	20458076	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		20458076	30846490	55	41546										
CACNA1I	0	genome.wustl.edu	37	chr22	39996592	39996592	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	caagatggtggccctggggaTttttggcaagaagtgctacc	14	8	0	2			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	22	39996592	39996592	T	G	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	missense	c.416	p.I139S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	107	0	0	48	28	36.36	-	-	-	G	39996592	T	G	39996592	3	3	420	1	0	0	0	0	1	0	0	0	2571	1493	52	5	426	5	CACNA1I	22	39996592	Missense_Mutation	SNP	T	TCGA-AR-A2LR-01A-12D-A18P-09	19538516	39996592	11307974	56	41547										
GYG2	0	genome.wustl.edu	37	chrX	2761383	2761383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	gttgatcactcctcaggtgtCcagcctgctcaggtaaggct	11	12	3	1			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	2761383	2761383	C	G	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	missense	c.230	p.S77C	0.987	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	42	0	0	15	23	60.53	-	-	-	G	2761383	C	G	2761383	3	3	420	1	0	0	0	0	1	0	0	0	6957	855	30	2	240	2	GYG2	23	2761383	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09		2761383	152509177	57	41548										
CCDC120	0	genome.wustl.edu	37	chrX	48921458	48921458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	aacggccccagttggtccgcCggcggccccccacagcccgc	12	21	0	0			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	48921458	48921458	C	T	SNP	CCDC120	ENST00000422185	human	ensembl	69_37n	1	known	missense	c.250	p.R84W	1.000	pfam_DUF3338	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	31	0	0	10	9	47.37	-	-	-	T	48921458	C	T	48921458	3	4	420	1	0	0	0	0	1	0	0	0	2781	643	23	1	260	1	CCDC120	23	48921458	Missense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	46160075	48921458	106349102	58	41549										
UTP14A	0	genome.wustl.edu	37	chrX	129053383	129053383	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	2	1	0.55363321799308	0	0.723981900452489	0.4	0.991179622791967	0	tgttgtaggcaaagatgcgaCgagcagagcttcagagggct	15	7	1	3			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	129053383	129053383	C	T	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	nonsense	c.670	p.R224*	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	66	0	0	27	12	30.77	-	-	-	T	129053383	C	T	129053383	4	4	420	1	0	0	0	0	0	1	0	0	17192	528	19	1	700	1	UTP14A	23	129053383	Nonsense_Mutation	SNP	C	TCGA-AR-A2LR-01A-12D-A18P-09	80131925	129053383	26217177	59	41550										
PER3	0	genome.wustl.edu	37	chr1	7890055	7890055	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcccatcctactgccagcgcTctgtccacaggatcgcctcc	7	19	1	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	43	0	0	35	4	10.26	-	-	-	A	7890055	T	A	7890055	2	1	421	1	0	0	0	0	0	0	0	1	11804	1538	54	5		5	PER3	1	7890055	Silent	SNP	T	TCGA-AR-A5QM-01A-11D-A27P-09		7890055	241360566	1	41551										
FAM84A	0	genome.wustl.edu	37	chr2	14775297	14775297	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aacggggaaggggctgagggGagaaaggacatggccttccc	18	8	0	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	2	14775297	14775297	G	A	SNP	FAM84A	ENST00000497769	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM84A	HGNC	ENSG00000162981	35	0	0	30	16	34.78	-	-	-	A	14775297	G	A	14775297	1	1	421	0	1	0	0	0	0	0	0	0	5686	1189	41	2		2	FAM84A	2	14775297	RNA	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09		14775297	228424076	2	41552										
THSD7B	0	genome.wustl.edu	37	chr2	138425431	138425431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttacttcctaccttgtttGgtaagtactaattagtaaaa	5	6	0	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	2	138425431	138425431	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.4748	p.C1583Y	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	85	0	0	67	19	21.84	-	-	-	A	138425431	G	A	138425431	3	1	421	1	0	0	0	0	1	0	0	0	15975	1362	47	4	4753	4	THSD7B	2	138425431	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	123650134	138425431	104773942	3	41553										
ARPP21	0	genome.wustl.edu	37	chr3	35731564	35731564	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accttttaaatttaacatttAttttgcagggacaggatgat	7	5	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	3	35731564	35731564	A	C	SNP	ARPP21	ENST00000425289	human	ensembl	69_37n	1	putative	missense	c.1	p.I1L	0.214	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	ARPP21	HGNC	ENSG00000172995	30	0	0	41	6	12.77	-	-	-	C	35731564	A	C	35731564	3	2	421	1	0	0	0	0	1	0	0	0	982	464	16	5		5	ARPP21	3	35731564	Missense_Mutation	SNP	A	TCGA-AR-A5QM-01A-11D-A27P-09		35731564	162290866	4	41554										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	17	0	0	12	4	25	-	-	-	G	178952085	A	G	178952085	3	3	421	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-AR-A5QM-01A-11D-A27P-09	143220521	178952085	19070345	5	41555										
TFAP2D	0	genome.wustl.edu	37	chr6	50683206	50683206	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagctgggctgcctcgatgcCtaccgccgccatgacctgtc	12	16	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	6	50683206	50683206	C	A	SNP	TFAP2D	ENST00000008391	human	ensembl	69_37n	1	known	silent	c.417	p.A139	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197	67	0	0	53	9	14.52	-	-	-	A	50683206	C	A	50683206	2	1	421	1	0	0	0	0	0	0	0	1	15885	668	24	4		4	TFAP2D	6	50683206	Silent	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09		50683206	120431861	6	41556										
OGDH	0	genome.wustl.edu	37	chr7	44736635	44736635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatccacattcggctgagcGgccaggacgtggagcggggc	17	12	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	44736635	44736635	G	A	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.2023	p.G675S	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	59	0	0	60	27	31.03	-	-	-	A	44736635	G	A	44736635	3	1	421	1	0	0	0	0	1	0	0	0	10912	1116	39	1	2250	1	OGDH	7	44736635	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09		44736635	114402028	7	41557										
MGAM	0	genome.wustl.edu	37	chr7	141767141	141767141	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accttcatttccctttccagGtttgtgtcagaccaggtgac	8	12	2	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	141767141	141767141	G	A	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.4920	p.E1640	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	89	0	0	133	21	13.55	-	-	-	A	141767141	G	A	141767141	2	1	421	1	0	0	0	0	0	0	0	1	9612	1276	44	4		4	MGAM	7	141767141	Silent	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	97030506	141767141	17371522	8	41558										
RNF32	0	genome.wustl.edu	37	chr7	156451374	156451374	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgagacttacttcactttgaGggctttttaaaaatgggtga	10	5	1	3			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	156451374	156451374	G	C	SNP	RNF32	ENST00000463028	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RNF32	HGNC	ENSG00000105982	10	0	0	10	4	28.57	-	-	-	C	156451374	G	C	156451374	1	2	421	0	1	0	0	0	0	0	0	0	13574	1015	35	4		4	RNF32	7	156451374	RNA	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	14684233	156451374	2687289	9	41559										
TEX15	0	genome.wustl.edu	37	chr8	30704914	30704914	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttatcttctctgcaaatcaaGttaaatttagtagaaaattc	4	6	3	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	8	30704914	30704914	G	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1620	p.N540K	0.017	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	15	0	0	13	7	35	-	-	-	T	30704914	G	T	30704914	3	4	421	1	0	0	0	0	1	0	0	0	15874	1020	36	4	6765	4	TEX15	8	30704914	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09		30704914	115659108	10	41560										
FBXO43	0	genome.wustl.edu	37	chr8	101146139	101146139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttcagacccatgataagcaCacagacataacacacaaaag	5	12	1	3			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	8	101146139	101146139	C	T	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	missense	c.2018	p.C673Y	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	20	0	0	18	16	47.06	-	-	-	T	101146139	C	T	101146139	3	4	421	1	0	0	0	0	1	0	0	0	5798	478	17	4	112	4	FBXO43	8	101146139	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	70441225	101146139	45217883	11	41561										
PTPRE	0	genome.wustl.edu	37	chr10	129883933	129883933	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttaactaagttgtgtttaaCttatgtgcagtctttataat	6	4	1	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	10	129883933	129883933	C	T	SNP	PTPRE	ENST00000479896	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTPRE	HGNC	ENSG00000132334	58	0	0	48	6	11.11	-	-	-	T	129883933	C	T	129883933	1	4	421	0	1	0	0	0	0	0	0	0	12883	580	20	4		4	PTPRE	10	129883933	RNA	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09		129883933	5650814	12	41562										
MRGPRX1	0	genome.wustl.edu	37	chr11	18955397	18955397	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcttcccgacagctccaggAtttcctcaggaagctgccct	9	15	1	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	11	18955397	18955397	A	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	missense	c.935	p.I312N	0.285	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	47	0	0	38	10	20.83	-	-	-	T	18955397	A	T	18955397	3	4	421	1	0	0	0	0	1	0	0	0	9838	333	12	5	37	5	MRGPRX1	11	18955397	Missense_Mutation	SNP	A	TCGA-AR-A5QM-01A-11D-A27P-09		18955397	116051119	13	41563										
ALX4	0	genome.wustl.edu	37	chr11	44296903	44296903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggccctcactgacctgcaCgcgggcctcagtgaggtctg	14	14	3	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	11	44296903	44296903	C	T	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	missense	c.772	p.V258M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	26	0	0	22	5	18.52	-	-	-	T	44296903	C	T	44296903	3	4	421	1	0	0	0	0	1	0	0	0	558	536	19	1	475	1	ALX4	11	44296903	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	25341506	44296903	90709613	14	41564										
DPF3	0	genome.wustl.edu	37	chr14	73137344	73137345	+	RNA	DEL	TC	TC	-													0	0	1	0	0	0	1	1	0	tcgatttctttgatttccctTctctctctctctctctctct							TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	14	73137344	73137345	TC	-	DEL	DPF3	ENST00000557704	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.959:0.966	-	-	-	no_errors	DPF3	HGNC	ENSG00000205683	32	0	0	47	8	14.55	-	-	-	-	73137345	TC	-	73137344	6	5	421	0	1	1	0	1	0	0	0	0	4753	1798	62	0		0	DPF3	14	73137344	RNA	DEL	TC	TCGA-AR-A5QM-01A-11D-A27P-09		73137344	34212196	15	41565										
SEMA4B	0	genome.wustl.edu	37	chr15	90771234	90771234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgacccgactctggctacgcAacggggcccccgtcaatgcc	11	18	2	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	15	90771234	90771234	A	C	SNP	SEMA4B	ENST00000332496	human	ensembl	69_37n	1	known	missense	c.1873	p.N625H	0.470	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4B	HGNC	ENSG00000185033	80	0	0	59	10	14.49	-	-	-	C	90771234	A	C	90771234	3	2	421	1	0	0	0	0	1	0	0	0	14120	130	5	5	1927	5	SEMA4B	15	90771234	Missense_Mutation	SNP	A	TCGA-AR-A5QM-01A-11D-A27P-09		90771234	11760158	16	41566										
SPATA8	0	genome.wustl.edu	37	chr15	97328267	97328267	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggatccaaagggttcaaaggCgaagggtgccatctgcttcc	13	10	2	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	15	97328267	97328267	C	T	SNP	SPATA8	ENST00000328504	human	ensembl	69_37n	1	known	nonsense	c.238	p.R80*	0.000	NULL	NULL	-	no_errors	SPATA8	HGNC	ENSG00000185594	57	0	0	41	24	36.92	-	-	-	T	97328267	C	T	97328267	4	4	421	1	0	0	0	0	0	1	0	0	15106	760	27	1	248	1	SPATA8	15	97328267	Nonsense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	6557033	97328267	5203125	17	41567										
C16orf11	0	genome.wustl.edu	37	chr16	613320	613320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgggaggcgggctcatgccGcgtgggcacaggggcgaggg	23	10	1	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	613320	613320	G	A	SNP	C16orf11	ENST00000409413	human	ensembl	69_37n	1	known	missense	c.26	p.R9H	0.635	NULL	NULL	-	no_errors	C16orf11	HGNC	ENSG00000161992	46	0	0	91	12	11.65	-	-	-	A	613320	G	A	613320	3	1	421	1	0	0	0	0	1	0	0	0	1823	1087	38	1	28	1	C16orf11	16	613320	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09		613320	89741433	18	41568										
WDR24	0	genome.wustl.edu	37	chr16	740055	740055	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgaggagactcccgccgtCcacactgtcagccctgaggg	13	15	1	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	740055	740055	C	A	SNP	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	missense	c.106	p.D36Y	0.002	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	20	0	0	31	6	16.22	-	-	-	A	740055	C	A	740055	3	1	421	1	0	0	0	0	1	0	0	0	17378	870	30	2		2	WDR24	16	740055	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	126735	740055	89614698	19	41569										
ERN2	0	genome.wustl.edu	37	chr16	23706081	23706081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tggcaggagctgcagaagctCgggcgccatccagccttccg	14	14	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	23706081	23706081	C	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.2212	p.E738K	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	52	0	0	75	19	20.21	-	-	-	T	23706081	C	T	23706081	3	4	421	1	0	0	0	0	1	0	0	0	5275	893	31	1	736	1	ERN2	16	23706081	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	22966026	23706081	66648672	20	41570										
KIAA0556	0	genome.wustl.edu	37	chr16	27709761	27709761	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caagccatccaggtggagaaCgcagccctgcagagggcgct	14	13	0	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	27709761	27709761	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	silent	c.1053	p.N351	0.111	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	18	0	0	23	13	36.11	-	-	-	T	27709761	C	T	27709761	2	4	421	1	0	0	0	0	0	0	0	1	8235	535	19	1		1	KIAA0556	16	27709761	Silent	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	4003680	27709761	62644992	21	41571										
CDH1	0	genome.wustl.edu	37	chr16	68835629	68835629	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctatttttccctcgacaccCgattcaaagtgggcacagat	7	13	1	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	68835629	68835629	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.220	p.R74*	0.998	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0	24	15	38.46	-	-	-	T	68835629	C	T	68835629	4	4	421	1	0	0	0	0	0	1	0	0	3124	644	23	1	230	1	CDH1	16	68835629	Nonsense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	41125868	68835629	21519124	22	41572										
TMEM132E	0	genome.wustl.edu	37	chr17	32961833	32961833	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccaggtcagtccgggaaagCgaggatgaggatgaggagga	18	7	1	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	32961833	32961833	C	A	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	1	known	missense	c.1434	p.S478R	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	46	0	0	44	5	10.2	-	-	-	A	32961833	C	A	32961833	3	1	421	1	0	0	0	0	1	0	0	0	16143	767	27	3	1464	3	TMEM132E	17	32961833	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09		32961833	48233377	23	41573										
TNS4	0	genome.wustl.edu	37	chr17	38643348	38643348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gctgttgctcctggtggctgGacaggggttgctgggagaag	19	7	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	38643348	38643348	G	A	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.1228	p.P410S	0.005	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	83	0	0	57	16	21.92	-	-	-	A	38643348	G	A	38643348	3	1	421	1	0	0	0	0	1	0	0	0	16440	1174	41	2	959	2	TNS4	17	38643348	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	5681515	38643348	42551862	24	41574										
SLC4A1	0	genome.wustl.edu	37	chr17	42328557	42328557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccacgttcctgaagatgagCggcagcaggacgcgccgcag	14	13	0	3			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	42328557	42328557	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	silent	c.2625	p.P875	0.004	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	63	0	0	65	8	10.96	-	-	-	T	42328557	C	T	42328557	2	4	421	1	0	0	0	0	0	0	0	1	14739	755	27	1		1	SLC4A1	17	42328557	Silent	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09	3685209	42328557	38866653	25	41575										
ANKRD12	0	genome.wustl.edu	37	chr18	9221991	9221992	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	atctgatgatgatgaaagttINSacacaggtttgtttcagata							TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	18	9221991	9221992	-	A	INS	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_ins	c.937_938	p.Y313fs	1.000:0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	42	0	0	25	10	28.57	-	-	-	A	9221992	-	A	9221991	7	5	421	1	0	1	1	0	0	0	0	0	640	1754	61	0	963	0	ANKRD12	18	9221991	Frame_Shift_Ins	INS	-	TCGA-AR-A5QM-01A-11D-A27P-09		9221991	68855257	26	41576										
ZNF99	0	genome.wustl.edu	37	chr19	22940675	22940675	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagccttgccacattcttcaCatttgtagggtttctcttca	6	11	4	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	19	22940675	22940675	C	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1763	p.C588F	0.781	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	26	0	0	23	6	20.69	-	-	-	A	22940675	C	A	22940675	3	1	421	1	0	0	0	0	1	0	0	0	18297	478	17	4	1361	4	ZNF99	19	22940675	Missense_Mutation	SNP	C	TCGA-AR-A5QM-01A-11D-A27P-09		22940675	36188308	27	41577										
RASGRP4	0	genome.wustl.edu	37	chr19	38903584	38903584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacttacccctggcgtggggGtgggtgaagcccatggcagg	17	11	0	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	19	38903584	38903584	G	T	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	missense	c.1522	p.P508T	0.262	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	41	0	0	39	9	18.75	-	-	-	T	38903584	G	T	38903584	3	4	421	1	0	0	0	0	1	0	0	0	13160	1261	44	4	523	4	RASGRP4	19	38903584	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	15962909	38903584	20225399	28	41578										
BRWD1	0	genome.wustl.edu	37	chr21	40568403	40568403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acgtctcacagttttagataTgttagctgtaaaagttttac	7	6	1	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	21	40568403	40568403	T	C	SNP	BRWD1	ENST00000342449	human	ensembl	69_37n	-1	known	missense	c.6592	p.I2198V	0.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658	46	0	0	68	9	11.69	-	-	-	C	40568403	T	C	40568403	3	2	421	1	0	0	0	0	1	0	0	0	1533	1464	51	5	617	5	BRWD1	21	40568403	Missense_Mutation	SNP	T	TCGA-AR-A5QM-01A-11D-A27P-09		40568403	7561492	29	41579										
ZNF280C	0	genome.wustl.edu	37	chrX	129370196	129370196	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaaagttttaccttcatgtGgtatttcaaaggatccaaaa	6	6	2	0			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	129370196	129370196	G	T	SNP	ZNF280C	ENST00000370978	human	ensembl	69_37n	-1	known	missense	c.763	p.H255N	0.995	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277	47	0	0	38	12	24	-	-	-	T	129370196	G	T	129370196	3	4	421	1	0	0	0	0	1	0	0	0	17912	1348	47	4	1498	4	ZNF280C	23	129370196	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09		129370196	25900364	30	41580										
MAGEC3	0	genome.wustl.edu	37	chrX	140985322	140985322	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggggatcccagaaagctgcTcactatacattgggtgcaga	12	9	1	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	140985322	140985322	T	A	SNP	MAGEC3	ENST00000536088	human	ensembl	69_37n	1	known	missense	c.884	p.L295H	0.003	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	57	0	0	55	11	16.67	-	-	-	A	140985322	T	A	140985322	3	1	421	1	0	0	0	0	1	0	0	0	9253	1551	54	5	2033	5	MAGEC3	23	140985322	Missense_Mutation	SNP	T	TCGA-AR-A5QM-01A-11D-A27P-09	11615126	140985322	14285238	31	41581										
SLITRK2	0	genome.wustl.edu	37	chrX	144905276	144905276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtacccttctatgtttgatGgactgcagagcttgcaatat	9	8	1	2			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	144905276	144905276	G	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.1333	p.G445R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	57	0	0	71	9	11.25	-	-	-	A	144905276	G	A	144905276	3	1	421	1	0	0	0	0	1	0	0	0	14832	1349	47	4	1335	4	SLITRK2	23	144905276	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	3919954	144905276	10365284	32	41582										
TMEM185A	0	genome.wustl.edu	37	chrX	148685667	148685667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acatacaagccagggccagtGgatgatcttgtccagtctta	10	10	2	1			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	148685667	148685667	G	T	SNP	TMEM185A	ENST00000316916	human	ensembl	69_37n	-1	known	missense	c.493	p.H165N	1.000	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM185A	HGNC	ENSG00000155984	58	0	0	72	13	15.29	-	-	-	T	148685667	G	T	148685667	3	4	421	1	0	0	0	0	1	0	0	0	16202	1348	47	4	575	4	TMEM185A	23	148685667	Missense_Mutation	SNP	G	TCGA-AR-A5QM-01A-11D-A27P-09	3780391	148685667	6584893	33	41583										
UBE4B	0	genome.wustl.edu	37	chr1	10221207	10221207	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	attgcctttccagctccgggAagcagtttgttcgctatata	9	10	0	0			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	10221207	10221207	A	G	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.3061	p.K1021E	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	69	0	0	43	11	20.37	-	-	-	G	10221207	A	G	10221207	3	3	422	1	0	0	0	0	1	0	0	0	16980	247	9	5	3151	5	UBE4B	1	10221207	Missense_Mutation	SNP	A	TCGA-AR-A5QN-01A-12D-A28B-09		10221207	239029414	1	41584										
PAQR7	0	genome.wustl.edu	37	chr1	26189712	26189712	+	Frame_Shift_Del	DEL	C	C	-													0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ggccaggacggagggcacctCctggcatgtgcggcccagca							TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	26189712	26189712	C	-	DEL	PAQR7	ENST00000374296	human	ensembl	69_37n	-1	known	frame_shift_del	c.619	p.E207fs	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR7	HGNC	ENSG00000182749	36	0	0	11	2	15.38	-	-	-	-	26189712	C	-	26189712	7	5	422	1	0	1	0	1	0	0	0	0	11513	864	30	0	425	0	PAQR7	1	26189712	Frame_Shift_Del	DEL	C	TCGA-AR-A5QN-01A-12D-A28B-09	15968505	26189712	223060909	2	41585										
NSUN4	0	genome.wustl.edu	37	chr1	46807697	46807697	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tgtacccttggaaactggacCcatgatttcgcctcctccta	7	14	0	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	46807697	46807697	C	T	SNP	NSUN4	ENST00000498008	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	64	0	0	42	5	10.42	-	-	-	T	46807697	C	T	46807697	1	4	422	0	1	0	0	0	0	0	0	0	10753	638	22	4		4	NSUN4	1	46807697	RNA	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	20617985	46807697	202442924	3	41586										
PRPF3	0	genome.wustl.edu	37	chr1	150307463	150307463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ctgatcctggatgagcaaggGcgcactgtagatgcaacagg	14	9	0	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	150307463	150307463	G	A	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	silent	c.786	p.G262	0.982	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	PRPF3	HGNC	ENSG00000117360	41	0	0	48	11	18.64	-	-	-	A	150307463	G	A	150307463	2	1	422	1	0	0	0	0	0	0	0	1	12646	1190	42	4		4	PRPF3	1	150307463	Silent	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	103499766	150307463	98943158	4	41587										
FCRL5	0	genome.wustl.edu	37	chr1	157490260	157490260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gcagtagagcagcagtgcccCcgcagcaaggcctgctatgc	13	14	0	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	157490260	157490260	C	T	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.2593	p.G865R	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	27	0	0	27	7	20.59	-	-	-	T	157490260	C	T	157490260	3	4	422	1	0	0	0	0	1	0	0	0	5844	623	22	4	364	4	FCRL5	1	157490260	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	7182797	157490260	91760361	5	41588										
CFHR3	0	genome.wustl.edu	37	chr1	196757919	196757919	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	acgctcagaaaagttgtacaTgtcgggggagaaatgagtgc	14	6	1	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	196757919	196757919	T	C	SNP	CFHR3	ENST00000367427	human	ensembl	69_37n	1	known	missense	c.658	p.C220R	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785	51	0	0	55	9	14.06	-	-	-	C	196757919	T	C	196757919	3	2	422	1	0	0	0	0	1	0	0	0	3315	1479	51	5		5	CFHR3	1	196757919	Missense_Mutation	SNP	T	TCGA-AR-A5QN-01A-12D-A28B-09	39267659	196757919	52492702	6	41589										
GJC2	0	genome.wustl.edu	37	chr1	228345773	228345773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	cgtgcaccgcctggcccgtgCgtctgagcaggagcggcgcc	16	16	1	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	1	228345773	228345773	C	T	SNP	GJC2	ENST00000366714	human	ensembl	69_37n	1	known	missense	c.314	p.A105V	0.001	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835	12	0	0	7	5	41.67	-	-	-	T	228345773	C	T	228345773	3	4	422	1	0	0	0	0	1	0	0	0	6467	768	27	1	316	1	GJC2	1	228345773	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	31587854	228345773	20904848	7	41590										
CTNNA2	0	genome.wustl.edu	37	chr2	80874927	80874927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	attccagacacgagttcgacGaggttctcagaagaaacaca	9	10	1	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	2	80874927	80874927	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.2750	p.R917Q	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	22	0	0	15	5	25	-	-	-	A	80874927	G	A	80874927	3	1	422	1	0	0	0	0	1	0	0	0	4045	1058	37	1	2506	1	CTNNA2	2	80874927	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		80874927	162324446	8	41591										
CCDC108	0	genome.wustl.edu	37	chr2	219897223	219897223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gccggaagacgatggggagcGtgagggttatgcctgggctc	19	8	0	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	2	219897223	219897223	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.614	p.T205M	0.099	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	36	0	0	32	8	20	-	-	-	A	219897223	G	A	219897223	3	1	422	1	0	0	0	0	1	0	0	0	2768	1145	40	1	5283	1	CCDC108	2	219897223	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	139022296	219897223	23302150	9	41592										
ACPL2	0	genome.wustl.edu	37	chr3	141011671	141011671	+	Frame_Shift_Del	DEL	C	C	-													0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ccaccccatcctgaaccaaaCcatcggccggatgcagcgtg							TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	3	141011671	141011671	C	-	DEL	ACPL2	ENST00000286353	human	ensembl	69_37n	1	known	frame_shift_del	c.1067	p.I357fs	0.827	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPL2	HGNC	ENSG00000155893	49	0	0	35	8	18.18	-	-	-	-	141011671	C	-	141011671	7	5	422	1	0	1	0	1	0	0	0	0	166	507	18	0	1085	0	ACPL2	3	141011671	Frame_Shift_Del	DEL	C	TCGA-AR-A5QN-01A-12D-A28B-09		141011671	57010759	10	41593										
EIF4A2	0	genome.wustl.edu	37	chr3	186501401	186501401	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ctgagtggtttttcggatcaTgtctggtggctccgcggatt	14	8	2	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	3	186501401	186501401	T	A	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.2	p.M1K	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	87	0	0	60	14	18.92	-	-	-	A	186501401	T	A	186501401	3	1	422	1	0	0	0	0	1	0	0	0	5062	1464	51	5	4	5	EIF4A2	3	186501401	Missense_Mutation	SNP	T	TCGA-AR-A5QN-01A-12D-A28B-09	45489730	186501401	11521029	11	41594										
FAM193B	0	genome.wustl.edu	37	chr5	176958509	176958509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	cggtatagttccgactcgtcGgggcagcgggtggctggggg	20	9	0	0			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	5	176958509	176958509	G	A	SNP	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	missense	c.950	p.P317L	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	44	0	0	24	15	38.46	-	-	-	A	176958509	G	A	176958509	3	1	422	1	0	0	0	0	1	0	0	0	5567	1116	39	1	1435	1	FAM193B	5	176958509	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		176958509	3956751	12	41595										
MEP1A	0	genome.wustl.edu	37	chr6	46797126	46797126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	catgcagttcagcaccagctCggggtccgcggaagaggcag	15	12	1	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	6	46797126	46797126	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	missense	c.962	p.S321L	0.000	pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	44	0	0	51	16	23.88	-	-	-	T	46797126	C	T	46797126	3	4	422	1	0	0	0	0	1	0	0	0	9546	893	31	1	1000	1	MEP1A	6	46797126	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09		46797126	124317941	13	41596										
RPS6KA2	0	genome.wustl.edu	37	chr6	166923827	166923827	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	agatgtctctctccatcttcGatctcactcggtcccgaact	6	15	4	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	6	166923827	166923827	G	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	nonsense	c.392	p.S131*	0.885	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	28	0	0	42	12	22.22	-	-	-	T	166923827	G	T	166923827	4	4	422	1	0	0	0	0	0	1	0	0	13737	1059	37	3	1956	3	RPS6KA2	6	166923827	Nonsense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	120126701	166923827	4191240	14	41597										
ANLN	0	genome.wustl.edu	37	chr7	36447401	36447401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tgatgctaaaagttgtgaggGacaaaatcctgagctacttc	10	7	0	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	7	36447401	36447401	G	A	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	missense	c.932	p.G311E	0.198	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	64	0	0	54	25	31.65	-	-	-	A	36447401	G	A	36447401	3	1	422	1	0	0	0	0	1	0	0	0	693	1174	41	2	950	2	ANLN	7	36447401	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		36447401	122691262	15	41598										
KCNU1	0	genome.wustl.edu	37	chr8	36788602	36788602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ctgcacgtcgctcttgtctgGaagaaaccggtgtaagctgg	13	10	2	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	8	36788602	36788602	G	T	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.2870	p.G957V	0.001	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	70	0	0	150	19	11.24	-	-	-	T	36788602	G	T	36788602	3	4	422	1	0	0	0	0	1	0	0	0	8147	1174	41	2	2968	2	KCNU1	8	36788602	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		36788602	109575420	16	41599										
TGS1	0	genome.wustl.edu	37	chr8	56737254	56737254	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	taattcgaagaccagcctctGaaacctaactatgcagcagt	7	11	1	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	8	56737254	56737254	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.2554	p.E852K	1.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	68	0	0	43	14	24.56	-	-	-	A	56737254	G	A	56737254	3	1	422	1	0	0	0	0	1	0	0	0	15932	1291	45	2	2604	2	TGS1	8	56737254	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	19948652	56737254	89626768	17	41600										
CA13	0	genome.wustl.edu	37	chr8	86178919	86178919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	agatggactggctgtcttggGagtgtttttacaggtgagaa	15	4	1	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	8	86178919	86178919	G	A	SNP	CA13	ENST00000321764	human	ensembl	69_37n	1	known	missense	c.437	p.G146E	0.998	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA13	HGNC	ENSG00000185015	98	0	0	141	25	15.06	-	-	-	A	86178919	G	A	86178919	3	1	422	1	0	0	0	0	1	0	0	0	2539	1174	41	2	451	2	CA13	8	86178919	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	29441665	86178919	60185103	18	41601										
BNC2	0	genome.wustl.edu	37	chr9	16552753	16552753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tacaggtgctgcgtgctgagCttatccaaggctgtggtggt	15	8	0	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	9	16552753	16552753	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	silent	c.444	p.K148	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	37	0	0	47	15	24.19	-	-	-	T	16552753	C	T	16552753	2	4	422	1	0	0	0	0	0	0	0	1	1480	796	28	4		4	BNC2	9	16552753	Silent	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09		16552753	124660678	19	41602										
CARD9	0	genome.wustl.edu	37	chr9	139265795	139265795	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ccgatgatcatggagaagacGcgggccggctccttgcctgt	14	12	1	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	9	139265795	139265795	G	A	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	silent	c.303	p.R101	0.022	superfamily_DEATH-like	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	53	0	0	60	12	16.67	-	-	-	A	139265795	G	A	139265795	2	1	422	1	0	0	0	0	0	0	0	1	2677	1074	38	1		1	CARD9	9	139265795	Silent	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	122713042	139265795	1947636	20	41603										
CPEB3	0	genome.wustl.edu	37	chr10	93999919	93999920	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tgtccgggccgttgggggccINSgggggggcagcggctgggct							TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	10	93999919	93999920	-	G	INS	CPEB3	ENST00000265997	human	ensembl	69_37n	-1	known	frame_shift_ins	c.189_188	p.A64fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB3	HGNC	ENSG00000107864	43	0	0	48	11	18.64	-	-	-	G	93999920	-	G	93999919	7	5	422	1	0	1	1	0	0	0	0	0	3832	639	23	0	1970	0	CPEB3	10	93999919	Frame_Shift_Ins	INS	-	TCGA-AR-A5QN-01A-12D-A28B-09		93999919	41534828	21	41604										
FOLH1	0	genome.wustl.edu	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	49	0	0	36	4	10	-	-	-	G	49204790	A	G	49204790	2	3	422	1	0	0	0	0	0	0	0	1	6025	224	8	5		5	FOLH1	11	49204790	Silent	SNP	A	TCGA-AR-A5QN-01A-12D-A28B-09		49204790	85801726	22	41605										
KRT1	0	genome.wustl.edu	37	chr12	53069280	53069280	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ctgccacggccgccgccgccGccacctccagaaccatagct	9	21	0	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	12	53069280	53069280	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	silent	c.1632	p.G544	0.001	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	84	0	0	76	15	16.48	-	-	-	A	53069280	G	A	53069280	2	1	422	1	0	0	0	0	0	0	0	1	8500	1074	38	1		1	KRT1	12	53069280	Silent	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		53069280	80782615	23	41606										
ZNF268	0	genome.wustl.edu	37	chr12	133780523	133780523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gaattcacacaggagaaaatCcctatgaatgcagtgaatgt	9	7	1	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	12	133780523	133780523	C	T	SNP	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	missense	c.2251	p.P751S	0.121	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	32	0	0	24	5	17.24	-	-	-	T	133780523	C	T	133780523	3	4	422	1	0	0	0	0	1	0	0	0	17903	855	30	2		2	ZNF268	12	133780523	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	80711243	133780523	71372	24	41607										
PNN	0	genome.wustl.edu	37	chr14	39649964	39649965	+	Frame_Shift_Del	DEL	AA	AA	-													0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	ttgttcatagtgatgcagagAaagaacaggaggaggaagaa							TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	14	39649964	39649965	AA	-	DEL	PNN	ENST00000216832	human	ensembl	69_37n	1	known	frame_shift_del	c.1051_1052	p.K351fs	1.000:1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941	45	0	0	33	5	13.16	-	-	-	-	39649965	AA	-	39649964	7	5	422	1	0	1	0	1	0	0	0	0	12234	247	9	0	1085	0	PNN	14	39649964	Frame_Shift_Del	DEL	AA	TCGA-AR-A5QN-01A-12D-A28B-09		39649964	67699576	25	41608										
GNB5	0	genome.wustl.edu	37	chr15	52416711	52416711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tccagagcagaaagcagtccCatcgggggaaactcgtagag	13	10	0	3			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	15	52416711	52416711	C	T	SNP	GNB5	ENST00000261837	human	ensembl	69_37n	-1	known	missense	c.1135	p.G379R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB5	HGNC	ENSG00000069966	75	0	0	52	9	14.75	-	-	-	T	52416711	C	T	52416711	3	4	422	1	0	0	0	0	1	0	0	0	6573	594	21	4	60	4	GNB5	15	52416711	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09		52416711	50114681	26	41609										
SMAD6	0	genome.wustl.edu	37	chr15	67073407	67073407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gtactgggagcaccggacgcGcgtgggccgcctctatgcgg	17	13	1	0			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	15	67073407	67073407	G	A	SNP	SMAD6	ENST00000288840	human	ensembl	69_37n	1	known	missense	c.1025	p.R342H	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD6	HGNC	ENSG00000137834	102	0	0	106	26	19.7	-	-	-	A	67073407	G	A	67073407	3	1	422	1	0	0	0	0	1	0	0	0	14851	1087	38	1	1077	1	SMAD6	15	67073407	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	14656696	67073407	35457985	27	41610										
FASN	0	genome.wustl.edu	37	chr17	80040424	80040424	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	acggccaggttgaagacgccGcccacgggcccaagctgcgc	14	16	0	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	17	80040424	80040424	G	A	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	silent	c.5898	p.G1966	0.103	pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,smart_PKS/FAS_KR	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	51	0	0	38	7	15.56	-	-	-	A	80040424	G	A	80040424	2	1	422	1	0	0	0	0	0	0	0	1	5729	1074	38	1		1	FASN	17	80040424	Silent	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		80040424	1154786	28	41611										
TSHZ3	0	genome.wustl.edu	37	chr19	31769937	31769937	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gagcgtttgcgaggcttggaCcagcgcttggggttgttgtt	17	7	0	0			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	31769937	31769937	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	nonsense	c.762	p.W254*	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	45	0	0	43	8	15.69	-	-	-	T	31769937	C	T	31769937	4	4	422	1	0	0	0	0	0	1	0	0	16721	508	18	4	2487	4	TSHZ3	19	31769937	Nonsense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09		31769937	27359046	29	41612										
ZNF573	0	genome.wustl.edu	37	chr19	38284083	38284083	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	gcatatacactactcctcgcCgcagggcactgtcccaccgg	9	17	0	0			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	38284083	38284083	C	T	SNP	ZNF573	ENST00000587684	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF573	HGNC	ENSG00000189144	31	0	0	16	6	27.27	-	-	-	T	38284083	C	T	38284083	1	4	422	0	1	0	0	0	0	0	0	0	18101	667	23	1		1	ZNF573	19	38284083	RNA	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	6514146	38284083	20844900	30	41613										
PSG5	0	genome.wustl.edu	37	chr19	43687592	43687592	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tgtgagagctcctgagtgtgTgtctctcgctgggcctgtgc	15	10	1	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	43687592	43687592	T	C	SNP	PSG5	ENST00000401992	human	ensembl	69_37n	-1	putative	silent	c.462	p.T154	0.000	NULL	pfam_Ig_V-set	-	no_errors	PSG5	HGNC	ENSG00000204941	54	0	0	38	12	24	-	-	-	C	43687592	T	C	43687592	2	2	422	1	0	0	0	0	0	0	0	1	12738	1711	59	5		5	PSG5	19	43687592	Silent	SNP	T	TCGA-AR-A5QN-01A-12D-A28B-09	5403509	43687592	15441391	31	41614										
CEACAM18	0	genome.wustl.edu	37	chr19	51981843	51981843	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	aggtcttggagggagcagagGaggtggctgtgtctctggag	20	5	2	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	51981843	51981843	G	T	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	nonsense	c.130	p.E44*	0.033	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	56	0	0	47	18	27.69	-	-	-	T	51981843	G	T	51981843	4	4	422	1	0	0	0	0	0	1	0	0	3218	1175	41	2	136	2	CEACAM18	19	51981843	Nonsense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	8294251	51981843	7147140	32	41615										
LILRA4	0	genome.wustl.edu	37	chr19	54848688	54848689	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	acctgcgatcaggatgtccaINSgggggtcactgggggccgac							TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	54848688	54848689	-	G	INS	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	frame_shift_ins	c.935_934	p.L312fs	0.979:0.982	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	95	0	0	65	23	26.14	-	-	-	G	54848689	-	G	54848688	7	5	422	1	0	1	1	0	0	0	0	0	8842	188	7	0	580	0	LILRA4	19	54848688	Frame_Shift_Ins	INS	-	TCGA-AR-A5QN-01A-12D-A28B-09	2866845	54848688	4280295	33	41616										
LILRB1	0	genome.wustl.edu	37	chr19	55146043	55146043	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	agtcacctgcacacagtaggCgctcatttcaatgacatcac	7	13	4	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	19	55146043	55146043	C	T	SNP	LILRB1	ENST00000462628	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	72	0	0	52	9	14.75	-	-	-	T	55146043	C	T	55146043	1	4	422	0	1	0	0	0	0	0	0	0	8845	783	27	1		1	LILRB1	19	55146043	RNA	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	297355	55146043	3982940	34	41617										
MAOB	0	genome.wustl.edu	37	chrX	43626803	43626803	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	aatccaatcagcctgagcagGcctggcacggagggcaaatg	13	11	1	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	X	43626803	43626803	G	T	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	silent	c.1473	p.G491	0.592	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	96	0	0	67	31	31.63	-	-	-	T	43626803	G	T	43626803	2	4	422	1	0	0	0	0	0	0	0	1	9297	1190	42	4		4	MAOB	23	43626803	Silent	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09		43626803	111643757	35	41618										
ELK1	0	genome.wustl.edu	37	chrX	47498441	47498441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	cgaggatgagggggtggctgCggctgcagagactggatggt	21	6	0	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	X	47498441	47498441	C	T	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	silent	c.507	p.P169	0.946	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	122	0	0	66	28	29.79	-	-	-	T	47498441	C	T	47498441	2	4	422	1	0	0	0	0	0	0	0	1	5096	755	27	1		1	ELK1	23	47498441	Silent	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	3871638	47498441	107772119	36	41619										
RGAG1	0	genome.wustl.edu	37	chrX	109696711	109696711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	tgtccaagccattaatgagaGccccggcctctggaacaatg	10	12	1	1			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	X	109696711	109696711	G	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.2866	p.A956T	0.001	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	86	0	0	59	17	22.37	-	-	-	A	109696711	G	A	109696711	3	1	422	1	0	0	0	0	1	0	0	0	13357	971	34	4	2868	4	RGAG1	23	109696711	Missense_Mutation	SNP	G	TCGA-AR-A5QN-01A-12D-A28B-09	62198270	109696711	45573849	37	41620										
F8	0	genome.wustl.edu	37	chrX	154194831	154194831	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	2	0.957674047556388	0.808016877637131	NA	0.808016877637131	0.333333333333333	0.930327025915261	0	aaaggaaggagagttgtcatCatcaaacctgaccacatcca	8	10	3	2			TCGA-AR-A5QN-01A-12D-A28B-09	TCGA-AR-A5QN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b786e544-43c3-4fe3-a81e-5c1cf5f7c82d	dff99bc6-c494-4862-9fc9-10e8f8d98628	X	154194831	154194831	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.1141	p.D381N	0.572	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	87	0	0	80	18	18.37	-	-	-	T	154194831	C	T	154194831	3	4	422	1	0	0	0	0	1	0	0	0	5387	826	29	2	6018	2	F8	23	154194831	Missense_Mutation	SNP	C	TCGA-AR-A5QN-01A-12D-A28B-09	44498120	154194831	1075729	38	41621										
MXRA8	0	genome.wustl.edu	37	chr1	1290681	1290681	+	Frame_Shift_Del	DEL	G	G	-													0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	gtagaggtggcagtagtgatGgtgcaggttgcaggtgtaca							TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	1	1290681	1290681	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	69_37n	-1	known	frame_shift_del	c.421	p.H141fs	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	MXRA8	HGNC	ENSG00000162576	18	0	0	3	2	40	-	-	-	-	1290681	G	-	1290681	7	5	423	1	0	1	0	1	0	0	0	0	10077	1348	47	0	935	0	MXRA8	1	1290681	Frame_Shift_Del	DEL	G	TCGA-AR-A5QP-01A-11D-A28B-09		1290681	247959940	1	41622										
LEPRE1	0	genome.wustl.edu	37	chr1	43213975	43213975	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	ggatgactatcatccttcctCtctgcctggacctctggggc	10	14	3	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	1	43213975	43213975	C	A	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1734	p.E578D	0.962	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	53	0	0	21	8	27.59	-	-	-	A	43213975	C	A	43213975	3	1	423	1	0	0	0	0	1	0	0	0	8783	912	32	2	511	2	LEPRE1	1	43213975	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09	41923294	43213975	206036646	2	41623										
YIPF1	0	genome.wustl.edu	37	chr1	54331884	54331884	+	Frame_Shift_Del	DEL	C	C	-													0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	aacccataccaagcagcccaCagaaagcagcatatggagca							TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	1	54331884	54331884	C	-	DEL	YIPF1	ENST00000539954	human	ensembl	69_37n	-1	known	frame_shift_del	c.895	p.V299fs	1.000	NULL	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799	49	0	0	13	2	13.33	-	-	-	-	54331884	C	-	54331884	7	5	423	1	0	1	0	1	0	0	0	0	17574	478	17	0	108	0	YIPF1	1	54331884	Frame_Shift_Del	DEL	C	TCGA-AR-A5QP-01A-11D-A28B-09	11117909	54331884	194918737	3	41624										
ITGA10	0	genome.wustl.edu	37	chr1	145533448	145533448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	catgcttttgcggggtggacGccgcctgtttctctctgggg	15	11	2	0			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	1	145533448	145533448	G	T	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	missense	c.1331	p.R444L	0.995	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	89	0	0	83	19	18.1	-	-	-	T	145533448	G	T	145533448	3	4	423	1	0	0	0	0	1	0	0	0	7927	1087	38	3	1377	3	ITGA10	1	145533448	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09	91201564	145533448	103717173	4	41625										
ERCC3	0	genome.wustl.edu	37	chr2	128050283	128050283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	gcagcccaacgctgacagctGcatacaaggagtaggcagtt	12	11	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	2	128050283	128050283	G	A	SNP	ERCC3	ENST00000285398	human	ensembl	69_37n	-1	known	missense	c.374	p.A125V	1.000	tigrfam_XPGB_DNA_repair	pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	-	no_errors	ERCC3	HGNC	ENSG00000163161	70	0	0	31	7	18.42	-	-	-	A	128050283	G	A	128050283	3	1	423	1	0	0	0	0	1	0	0	0	5251	1319	46	4	2026	4	ERCC3	2	128050283	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09		128050283	115149090	5	41626										
TTN	0	genome.wustl.edu	37	chr2	179583473	179583473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	actgccagcatcatttgtaaCgaggcaagaatagtctccac	8	11	2	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	2	179583473	179583473	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20722	p.V6908I	0.146	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0	29	4	12.12	-	-	-	T	179583473	C	T	179583473	3	4	423	1	0	0	0	0	1	0	0	0	16832	536	19	1	80191	1	TTN	2	179583473	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09	51533190	179583473	63615900	6	41627										
FASTKD2	0	genome.wustl.edu	37	chr2	207632179	207632179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	actattttggtgcagactttGctgagggtgacccaggtaaa	12	7	0	3			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	2	207632179	207632179	G	T	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.762	p.L254F	1.000	NULL	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	36	0	0	18	3	14.29	-	-	-	T	207632179	G	T	207632179	3	4	423	1	0	0	0	0	1	0	0	0	5732	1310	46	4	764	4	FASTKD2	2	207632179	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09	28048706	207632179	35567194	7	41628										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	69	0	0	61	16	20.78	-	-	-	A	178936091	G	A	178936091	3	1	423	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09		178936091	19086339	8	41629										
C4orf34	0	genome.wustl.edu	37	chr4	39558097	39558097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	ggctggatcctcttagattaGgaggtctcagtaagaacaag	12	7	2	2			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	4	39558097	39558097	G	A	SNP	C4orf34	ENST00000295958	human	ensembl	69_37n	-1	known	missense	c.218	p.P73L	0.662	pfam_Uncharacterised_CD034/YQF4	pfam_Uncharacterised_CD034/YQF4	-	no_errors	C4orf34	HGNC	ENSG00000163683	33	0	0	25	4	13.79	-	-	-	A	39558097	G	A	39558097	3	1	423	1	0	0	0	0	1	0	0	0	2285	1000	35	4	89	4	C4orf34	4	39558097	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09		39558097	151596179	9	41630										
CMBL	0	genome.wustl.edu	37	chr5	10288580	10288580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	tttcagccactcagggaagaTagaccagtcgccagaggggt	13	10	2	3			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	5	10288580	10288580	T	C	SNP	CMBL	ENST00000296658	human	ensembl	69_37n	-1	known	missense	c.277	p.I93V	0.976	pfam_Dienelactn_hydro	pfam_Dienelactn_hydro,pfam_PLipase/COase/thioEstase	-	no_errors	CMBL	HGNC	ENSG00000164237	50	0	0	27	5	15.62	-	-	-	C	10288580	T	C	10288580	3	2	423	1	0	0	0	0	1	0	0	0	3606	1406	49	5	476	5	CMBL	5	10288580	Missense_Mutation	SNP	T	TCGA-AR-A5QP-01A-11D-A28B-09		10288580	170626680	10	41631										
PLK2	0	genome.wustl.edu	37	chr5	57752411	57752412	+	Frame_Shift_Del	DEL	CT	CT	-													0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	gtcttcatcttctttagacaCtctatctgtatatcaagaaa							TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	5	57752411	57752412	CT	-	DEL	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	frame_shift_del	c.1162_1161	p.R387fs	0.999:0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	92	0	0	71	10	12.35	-	-	-	-	57752412	CT	-	57752411	7	5	423	1	0	1	0	1	0	0	0	0	12170	565	20	0	919	0	PLK2	5	57752411	Frame_Shift_Del	DEL	CT	TCGA-AR-A5QP-01A-11D-A28B-09	47463831	57752411	123162849	11	41632										
WWC1	0	genome.wustl.edu	37	chr5	167891929	167891929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	cacagtggttgcgtgaggacGagcgtttccgcctgctgctg	15	11	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	5	167891929	167891929	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.3112	p.E1038K	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	96	0	0	63	18	22.22	-	-	-	A	167891929	G	A	167891929	3	1	423	1	0	0	0	0	1	0	0	0	17508	1059	37	1	3212	1	WWC1	5	167891929	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09	110139518	167891929	13023331	12	41633										
OR12D2	0	genome.wustl.edu	37	chr6	29365192	29365192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	gctctgtaaagcactgtccaCttgtgcctcccacttcatgg	8	14	2	0			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	6	29365192	29365192	C	T	SNP	OR12D2	ENST00000383555	human	ensembl	69_37n	1	known	missense	c.716	p.T239I	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR12D2	HGNC	ENSG00000168787	137	0	0	70	11	13.58	-	-	-	T	29365192	C	T	29365192	3	4	423	1	0	0	0	0	1	0	0	0	11004	565	20	4	718	4	OR12D2	6	29365192	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09		29365192	141749875	13	41634										
TRIM73	0	genome.wustl.edu	37	chr7	75028599	75028599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	cggtcacgcccgtctccaccGtctgcagccgcatgaaggtg	12	16	3	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	7	75028599	75028599	G	A	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	13	0	0	18	6	25	-	-	-	A	75028599	G	A	75028599	3	1	423	1	0	0	0	0	1	0	0	0	16642	1145	40	1	384	1	TRIM73	7	75028599	Missense_Mutation	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09		75028599	84110064	14	41635										
VDAC3	0	genome.wustl.edu	37	chr8	42259332	42259332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	gagtgggaaattgaaggcctCctataaacgggattgtttta	12	5	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	8	42259332	42259332	C	T	SNP	VDAC3	ENST00000392935	human	ensembl	69_37n	1	known	missense	c.353	p.S118F	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC3	HGNC	ENSG00000078668	73	0	0	57	15	20.83	-	-	-	T	42259332	C	T	42259332	3	4	423	1	0	0	0	0	1	0	0	0	17245	855	30	2	371	2	VDAC3	8	42259332	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09		42259332	104104690	15	41636										
PIP5KL1	0	genome.wustl.edu	37	chr9	130690398	130690398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	tgaggaactgcaggtaggggCcgccggggcccagggcagcc	19	12	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	9	130690398	130690398	C	T	SNP	PIP5KL1	ENST00000388747	human	ensembl	69_37n	-1	novel	missense	c.380	p.G127D	0.517	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5KL1	HGNC	ENSG00000167103	31	0	0	14	3	17.65	-	-	-	T	130690398	C	T	130690398	3	4	423	1	0	0	0	0	1	0	0	0	12016	739	26	4	832	4	PIP5KL1	9	130690398	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09		130690398	10523033	16	41637										
SLC22A9	0	genome.wustl.edu	37	chr11	63141399	63141399	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	aacacacagattccaggccaTgggaattacattgggaatgt	10	8	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	11	63141399	63141399	T	C	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	1	known	missense	c.695	p.M232T	0.174	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	80	0	0	48	10	17.24	-	-	-	C	63141399	T	C	63141399	3	2	423	1	0	0	0	0	1	0	0	0	14550	1464	51	5	709	5	SLC22A9	11	63141399	Missense_Mutation	SNP	T	TCGA-AR-A5QP-01A-11D-A28B-09		63141399	71865117	17	41638										
GDPD4	0	genome.wustl.edu	37	chr11	76996161	76996161	+	Frame_Shift_Del	DEL	C	C	-													0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	aaagtattcactggatgtttCtatccacaggaacagcaaca							TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	11	76996161	76996161	C	-	DEL	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	frame_shift_del	c.22	p.E8fs	1.000	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	23	0	0	11	4	25	-	-	-	-	76996161	C	-	76996161	7	5	423	1	0	1	0	1	0	0	0	0	6378	922	32	0	1600	0	GDPD4	11	76996161	Frame_Shift_Del	DEL	C	TCGA-AR-A5QP-01A-11D-A28B-09	13854762	76996161	58010355	18	41639										
SLITRK1	0	genome.wustl.edu	37	chr13	84455450	84455450	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	agtgagggaattgccatgcaGaaataaatggtaaaactggg	13	4	0	2			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	13	84455450	84455450	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	silent	c.193	p.L65	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	23	0	0	34	7	17.07	-	-	-	A	84455450	G	A	84455450	2	1	423	1	0	0	0	0	0	0	0	1	14831	933	33	2		2	SLITRK1	13	84455450	Silent	SNP	G	TCGA-AR-A5QP-01A-11D-A28B-09		84455450	30714428	19	41640										
PPP1R9B	0	genome.wustl.edu	37	chr17	48217647	48217647	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	tcctcagccaggtaatgcatCatcctccctgctgatgctcc	7	16	2	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	17	48217647	48217647	C	A	SNP	PPP1R9B	ENST00000513579	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	PPP1R9B	HGNC	ENSG00000108819	35	0	0	20	4	16.67	-	-	-	A	48217647	C	A	48217647	1	1	423	0	1	0	0	0	0	0	0	0	12456	841	29	2		2	PPP1R9B	17	48217647	RNA	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09		48217647	32977563	20	41641										
WDR44	0	genome.wustl.edu	37	chrX	117566792	117566792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	atgataaaaacgcaccctttCggcaacggccattttgcaaa	7	11	0	1			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	X	117566792	117566792	C	T	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1786	p.R596W	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	50	0	0	26	4	13.33	-	-	-	T	117566792	C	T	117566792	3	4	423	1	0	0	0	0	1	0	0	0	17393	875	31	1	1836	1	WDR44	23	117566792	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09		117566792	37703768	21	41642										
FUNDC2	0	genome.wustl.edu	37	chrX	154261714	154261714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.820212179136605	1.31972789115646	NA	1.31972789115646	0.428571428571429	1	0	ttttgagtcactggaccttgCggaatttgctaagaagcagc	11	8	1	2			TCGA-AR-A5QP-01A-11D-A28B-09	TCGA-AR-A5QP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a0e90c6c-34d0-4c1c-8c71-a914961a6847	60b54869-5add-4799-89a0-e5f090801826	X	154261714	154261714	C	T	SNP	FUNDC2	ENST00000369498	human	ensembl	69_37n	1	known	missense	c.170	p.A57V	1.000	NULL	pfam_FUN14	-	no_errors	FUNDC2	HGNC	ENSG00000165775	108	0	0	73	19	20.43	-	-	-	T	154261714	C	T	154261714	3	4	423	1	0	0	0	0	1	0	0	0	6147	768	27	1	176	1	FUNDC2	23	154261714	Missense_Mutation	SNP	C	TCGA-AR-A5QP-01A-11D-A28B-09	36694922	154261714	1008846	22	41643										
GABRD	0	genome.wustl.edu	37	chr1	1956838	1956838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	accacatctcagaggccaacAtggtaggtgccaccagcctc	9	15	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	1956838	1956838	A	G	SNP	GABRD	ENST00000378585	human	ensembl	69_37n	1	known	missense	c.247	p.M83V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC	ENSG00000187730	38	0	0	34	6	15	-	-	-	G	1956838	A	G	1956838	3	3	424	1	0	0	0	0	1	0	0	0	6218	217	8	5	257	5	GABRD	1	1956838	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09		1956838	247293783	1	41644										
TMCO4	0	genome.wustl.edu	37	chr1	20082237	20082237	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gtcatgtggcaaacgaggacTctggcccgggcgtcatagtg	15	10	3	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	20082237	20082237	T	C	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	silent	c.405	p.R135	1.000	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	58	0	0	32	7	17.95	-	-	-	C	20082237	T	C	20082237	2	2	424	1	0	0	0	0	0	0	0	1	16093	1548	54	5		5	TMCO4	1	20082237	Silent	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09	18125399	20082237	229168384	2	41645										
CCDC23	0	genome.wustl.edu	37	chr1	43282143	43282144	+	Frame_Shift_Del	DEL	TC	TC	-													0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cagctcctgctgggctgattTctgtttggccttctcaactc							TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	43282143	43282144	TC	-	DEL	CCDC23	ENST00000372521	human	ensembl	69_37n	-1	known	frame_shift_del	c.73_72	p.K25fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC23	HGNC	ENSG00000177868	48	0	0	38	6	13.64	-	-	-	-	43282144	TC	-	43282143	7	5	424	1	0	1	0	1	0	0	0	0	2824	1792	62	0	135	0	CCDC23	1	43282143	Frame_Shift_Del	DEL	TC	TCGA-AR-A5QQ-01A-11D-A28B-09	23199906	43282143	205968478	3	41646										
TSPAN1	0	genome.wustl.edu	37	chr1	46651256	46651256	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cacatgggaactgtgaagagGcaccctggcaagcagcagtg	14	10	0	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	46651256	46651256	G	T	SNP	TSPAN1	ENST00000470318	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	TSPAN1	HGNC	ENSG00000117472	65	0	0	63	13	17.11	-	-	-	T	46651256	G	T	46651256	1	4	424	0	1	0	0	0	0	0	0	0	16729	1218	42	4		4	TSPAN1	1	46651256	RNA	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	3369113	46651256	202599365	4	41647										
HSPB11	0	genome.wustl.edu	37	chr1	54387380	54387380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	agaaacgctatgcacagatgCaaaatgatcaaaggctgata	9	7	1	4			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	54387380	54387380	C	A	SNP	HSPB11	ENST00000194214	human	ensembl	69_37n	-1	known	missense	c.379	p.A127S	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	-	no_errors	HSPB11	HGNC	ENSG00000081870	33	0	0	41	8	16.33	-	-	-	A	54387380	C	A	54387380	3	1	424	1	0	0	0	0	1	0	0	0	7472	710	25	4	59	4	HSPB11	1	54387380	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	7736124	54387380	194863241	5	41648										
INADL	0	genome.wustl.edu	37	chr1	62374109	62374109	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gaggccattaagaatgcaggAaaccctgtggtgttcattgt	12	7	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	62374109	62374109	A	G	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	silent	c.3447	p.G1149	0.953	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	79	0	0	69	16	18.82	-	-	-	G	62374109	A	G	62374109	2	3	424	1	0	0	0	0	0	0	0	1	7785	233	9	5		5	INADL	1	62374109	Silent	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09	7986729	62374109	186876512	6	41649										
RNPC3	0	genome.wustl.edu	37	chr1	104093607	104093607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	aggtcgtatgaaaggacaagCtttcattggacttcctaatg	10	7	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	104093607	104093607	C	G	SNP	RNPC3	ENST00000423855	human	ensembl	69_37n	1	known	missense	c.1406	p.A469G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	43	0	0	27	8	22.86	-	-	-	G	104093607	C	G	104093607	3	3	424	1	0	0	0	0	1	0	0	0	13594	797	28	4	295	4	RNPC3	1	104093607	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	41719498	104093607	145157014	7	41650										
FAM72B	0	genome.wustl.edu	37	chr1	120854498	120854498	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ttttttattttcaggtgtaaAcatcctactttggggcaact	7	7	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	120854498	120854498	A	G	SNP	FAM72B	ENST00000369390	human	ensembl	69_37n	1	known	missense	c.362	p.N121S	1.000	NULL	NULL	-	no_errors	FAM72B	HGNC	ENSG00000188610	264	0	0	127	21	14.19	-	-	-	G	120854498	A	G	120854498	3	3	424	1	0	0	0	0	1	0	0	0	5660	43	2	5	376	5	FAM72B	1	120854498	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09	16760891	120854498	128396123	8	41651										
TDRD5	0	genome.wustl.edu	37	chr1	179603712	179603712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ttcaaaaaaacaaaaagagcCacaacagaagatttgcaaga	6	7	1	4			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	179603712	179603712	C	T	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.1247	p.P416L	0.550	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	52	0	0	36	8	18.18	-	-	-	T	179603712	C	T	179603712	3	4	424	1	0	0	0	0	1	0	0	0	15828	594	21	4	1273	4	TDRD5	1	179603712	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	58749214	179603712	69646909	9	41652										
GLUL	0	genome.wustl.edu	37	chr1	182356328	182356328	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gcttgttagggtccttacggAaggggtcccgaaacatggca	14	9	0	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	182356328	182356328	A	G	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	missense	c.266	p.F89S	1.000	pfam_Gln_synt_beta,superfamily_Gln_synt_beta	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	40	0	0	47	6	11.32	-	-	-	G	182356328	A	G	182356328	3	3	424	1	0	0	0	0	1	0	0	0	6530	246	9	5	875	5	GLUL	1	182356328	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09	2752616	182356328	66894293	10	41653										
GALNT2	0	genome.wustl.edu	37	chr1	230415130	230415130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	acagtcgcacggccaagagcGggggcctaagcgtggaggtg	18	10	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	230415130	230415130	G	A	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	1	known	missense	c.1642	p.G548R	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	55	0	0	43	8	15.69	-	-	-	A	230415130	G	A	230415130	3	1	424	1	0	0	0	0	1	0	0	0	6263	1116	39	1	1704	1	GALNT2	1	230415130	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	48058802	230415130	18835491	11	41654										
KDM3A	0	genome.wustl.edu	37	chr2	86709793	86709793	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	aagagcaactggaatgtgttTagggagtgctggaaacaagg	15	4	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	2	86709793	86709793	T	C	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	silent	c.2898	p.F966	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	42	0	0	38	7	15.56	-	-	-	C	86709793	T	C	86709793	2	2	424	1	0	0	0	0	0	0	0	1	8180	1751	61	5		5	KDM3A	2	86709793	Silent	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09		86709793	156489580	12	41655										
MAP4	0	genome.wustl.edu	37	chr3	47898938	47898938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	caccaggcttgtgcttgatgTtagccttagacccacacttg	9	12	0	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	47898938	47898938	T	C	SNP	MAP4	ENST00000360240	human	ensembl	69_37n	-1	known	missense	c.3131	p.N1044S	1.000	pfam_Tau/MAP_tubulin-bd_rpt	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	31	0	0	43	5	10.42	-	-	-	C	47898938	T	C	47898938	3	2	424	1	0	0	0	0	1	0	0	0	9329	1725	60	5	494	5	MAP4	3	47898938	Missense_Mutation	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09		47898938	150123492	13	41656										
SEMA3B	0	genome.wustl.edu	37	chr3	50308521	50308521	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	acttgccacacctcccaggaGcccgtcctccggctggaccc	9	20	0	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	50308521	50308521	G	T	SNP	SEMA3B	ENST00000316347	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171	39	0	0	30	4	11.76	-	-	-	T	50308521	G	T	50308521	1	4	424	0	1	0	0	0	0	0	0	0	14113	962	34	4		4	SEMA3B	3	50308521	RNA	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	2409583	50308521	147713909	14	41657										
HPS3	0	genome.wustl.edu	37	chr3	148877950	148877950	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	taactgccatgagctatctaAggaagctggatacttctggg	11	8	2	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	148877950	148877950	A	T	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.1990	p.R664W	0.003	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	75	0	0	51	10	16.39	-	-	-	T	148877950	A	T	148877950	3	4	424	1	0	0	0	0	1	0	0	0	7391	63	3	5	2032	5	HPS3	3	148877950	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09	98569429	148877950	49144480	15	41658										
PPBP	0	genome.wustl.edu	37	chr4	74853801	74853801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cactgttacaggaaggggtgGtatcaagtctgaggctcatg	14	7	3	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	4	74853801	74853801	G	A	SNP	PPBP	ENST00000296028	human	ensembl	69_37n	-1	known	missense	c.20	p.T7I	0.002	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	PPBP	HGNC	ENSG00000163736	47	0	0	55	8	12.7	-	-	-	A	74853801	G	A	74853801	3	1	424	1	0	0	0	0	1	0	0	0	12376	1261	44	4	378	4	PPBP	4	74853801	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09		74853801	116300475	16	41659										
SPEF2	0	genome.wustl.edu	37	chr5	35694435	35694435	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gtccagtttcagatgaagtaTtaccagaaacagaaggtgaa	10	6	1	5			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	35694435	35694435	T	G	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	missense	c.1945	p.L649V	0.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	98	0	0	52	10	16.13	-	-	-	G	35694435	T	G	35694435	3	3	424	1	0	0	0	0	1	0	0	0	15126	1490	52	5	2016	5	SPEF2	5	35694435	Missense_Mutation	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09		35694435	145220825	17	41660										
PCDHB7	0	genome.wustl.edu	37	chr5	140553974	140553974	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tgtttgccctcaggtccctgGactacgaggccctgcaggcg	13	14	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	140553974	140553974	G	C	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1558	p.D520H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	185	0	0	145	21	12.65	-	-	-	C	140553974	G	C	140553974	3	2	424	1	0	0	0	0	1	0	0	0	11620	1174	41	2	1560	2	PCDHB7	5	140553974	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	104859539	140553974	40361286	18	41661										
PCDHB11	0	genome.wustl.edu	37	chr5	140580562	140580563	+	Frame_Shift_Del	DEL	AG	AG	-													0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	aattactacacgttggaaacAgagagaccactggacagaga							TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	140580562	140580563	AG	-	DEL	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	frame_shift_del	c.1215_1216	p.R407fs	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	89	0	0	63	7	10	-	-	-	-	140580563	AG	-	140580562	7	5	424	1	0	1	0	1	0	0	0	0	11609	175	7	0	1217	0	PCDHB11	5	140580562	Frame_Shift_Del	DEL	AG	TCGA-AR-A5QQ-01A-11D-A28B-09	26588	140580562	40334698	19	41662										
GFPT2	0	genome.wustl.edu	37	chr5	179731905	179731905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tcagctccccagccaggatgCcttctgagtgcatgtaggtt	11	12	2	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	179731905	179731905	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.1709	p.G570D	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	27	0	0	30	4	11.76	-	-	-	T	179731905	C	T	179731905	3	4	424	1	0	0	0	0	1	0	0	0	6398	739	26	4	351	4	GFPT2	5	179731905	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	39151343	179731905	1183355	20	41663										
SLC39A7	0	genome.wustl.edu	37	chr6	33168855	33168855	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gccctacatccgggaggtggTtcgggataaagagaactagt	14	8	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	6	33168855	33168855	T	A	SNP	SLC39A7	ENST00000496894	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC39A7	HGNC	ENSG00000112473	49	0	0	36	4	10	-	-	-	A	33168855	T	A	33168855	1	1	424	0	1	0	0	0	0	0	0	0	14712	1740	60	5		5	SLC39A7	6	33168855	RNA	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09		33168855	137946212	21	41664										
MDN1	0	genome.wustl.edu	37	chr6	90383931	90383931	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	atctcgtagttgactgttgcCaaaggtgatcctgtttccgc	10	10	1	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	6	90383931	90383931	C	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.13139	p.W4380L	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	34	0	0	28	5	15.15	-	-	-	A	90383931	C	A	90383931	3	1	424	1	0	0	0	0	1	0	0	0	9486	595	21	4	3747	4	MDN1	6	90383931	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	57215076	90383931	80731136	22	41665										
IQCE	0	genome.wustl.edu	37	chr7	2617916	2617916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cgacgtggacctgatgagaaCgaagctccggcgcctggagg	16	11	0	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	2617916	2617916	C	T	SNP	IQCE	ENST00000402050	human	ensembl	69_37n	1	known	missense	c.506	p.T169M	0.955	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCE	HGNC	ENSG00000106012	42	0	0	51	7	12.07	-	-	-	T	2617916	C	T	2617916	3	4	424	1	0	0	0	0	1	0	0	0	7860	536	19	1	532	1	IQCE	7	2617916	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		2617916	156520747	23	41666										
POM121C	0	genome.wustl.edu	37	chr7	75051419	75051419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cccctcagcggccccaaatgCgggctgggggttggctcccg	15	16	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	75051419	75051419	C	T	SNP	POM121C	ENST00000257665	human	ensembl	69_37n	-1	known	missense	c.2842	p.A948T	0.005	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	48	0	0	24	3	11.11	-	-	-	T	75051419	C	T	75051419	3	4	424	1	0	0	0	0	1	0	0	0	12314	768	27	1	859	1	POM121C	7	75051419	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	72433503	75051419	84087244	24	41667										
TSPAN12	0	genome.wustl.edu	37	chr7	120496782	120496782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	agattgagggcgtagagcagGcagcgcagacacttcacgga	15	9	1	4			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	120496782	120496782	G	C	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	missense	c.36	p.C12W	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	44	0	0	53	10	15.87	-	-	-	C	120496782	G	C	120496782	3	2	424	1	0	0	0	0	1	0	0	0	16732	1195	42	4	909	4	TSPAN12	7	120496782	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	45445363	120496782	38641881	25	41668										
TCEA1	0	genome.wustl.edu	37	chr8	54879688	54879688	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gggacaaaattattttctatCagtctccacatggaaagacc	7	9	3	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	8	54879688	54879688	C	T	SNP	TCEA1	ENST00000521086	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.094	-	-	-	no_errors	TCEA1	HGNC	ENSG00000187735	24	0	0	24	7	22.58	-	-	-	T	54879688	C	T	54879688	1	4	424	0	1	0	0	0	0	0	0	0	15762	841	29	2		2	TCEA1	8	54879688	RNA	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		54879688	91484334	26	41669										
GRHL2	0	genome.wustl.edu	37	chr8	102611287	102611287	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ctttttttaatgttacagccGattacaaggagagctttaat	7	6	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	8	102611287	102611287	G	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	missense	c.1006	p.D336Y	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	79	0	0	62	9	12.68	-	-	-	T	102611287	G	T	102611287	3	4	424	1	0	0	0	0	1	0	0	0	6815	1058	37	3	1036	3	GRHL2	8	102611287	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	47731599	102611287	43752735	27	41670										
BNC2	0	genome.wustl.edu	37	chr9	16437297	16437297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	attgctgttctctaagtgagCaaggaggctgggactcctgg	14	8	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	16437297	16437297	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.895	p.A299T	0.970	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	74	0	0	58	10	14.71	-	-	-	T	16437297	C	T	16437297	3	4	424	1	0	0	0	0	1	0	0	0	1480	710	25	4	2412	4	BNC2	9	16437297	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		16437297	124776134	28	41671										
PCSK5	0	genome.wustl.edu	37	chr9	78722166	78722166	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	acttttcactttgttttccaGatcactacagatctgaggca	6	10	3	3			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	78722166	78722166	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	splice_site	c.1108-1	e9-1	1.000	-	-	-	no_errors	PCSK5	HGNC	ENSG00000099139	24	0	0	16	6	27.27	-	-	-	C	78722166	G	C	78722166	5	2	424	1	0	0	0	0	0	0	1	0	11676	956	33	2	1141	2	PCSK5	9	78722166	Splice_Site	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	62284869	78722166	62491265	29	41672										
SOHLH1	0	genome.wustl.edu	37	chr9	138590846	138590846	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ggcaccaccactcacctgcgCtccctctcgctgatcacgtt	7	19	3	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	138590846	138590846	C	G	SNP	SOHLH1	ENST00000425225	human	ensembl	69_37n	-1	known	missense	c.192	p.E64D	0.879	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH1	HGNC	ENSG00000165643	53	0	0	62	10	13.89	-	-	-	G	138590846	C	G	138590846	3	3	424	1	0	0	0	0	1	0	0	0	15012	796	28	4	1040	4	SOHLH1	9	138590846	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	59868680	138590846	2622585	30	41673										
EHMT1	0	genome.wustl.edu	37	chr9	140728964	140728964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cacccgcctgatcgaggccgGcgagcagctcgggtacgcac	14	16	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	140728964	140728964	G	C	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.3704	p.G1235A	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	71	0	0	59	10	14.49	-	-	-	C	140728964	G	C	140728964	3	2	424	1	0	0	0	0	1	0	0	0	5018	1203	42	4	3855	4	EHMT1	9	140728964	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	2138118	140728964	484467	31	41674										
ARHGAP21	0	genome.wustl.edu	37	chr10	24885700	24885700	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gagctggtgggcagtcatctAgtcggacgccgaaagttcct	14	10	2	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	10	24885700	24885700	A	G	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.3446	p.L1149P	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	74	0	0	51	13	20.31	-	-	-	G	24885700	A	G	24885700	3	3	424	1	0	0	0	0	1	0	0	0	873	420	15	5	2470	5	ARHGAP21	10	24885700	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09		24885700	110649047	32	41675										
HRAS	0	genome.wustl.edu	37	chr11	534286	534286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cagcgcactcttgcccacacCgccggcgcccaccaccacca	7	23	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	534286	534286	C	G	SNP	HRAS	ENST00000311189	human	ensembl	69_37n	-1	known	missense	c.37	p.G13R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	HRAS	HGNC	ENSG00000174775	59	0	0	45	30	40	-	-	-	G	534286	C	G	534286	3	3	424	1	0	0	0	0	1	0	0	0	7399	652	23	3	615	3	HRAS	11	534286	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		534286	134472230	33	41676										
OR8K3	0	genome.wustl.edu	37	chr11	56086127	56086127	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ggtagtgaactttttattctCtcagccatgtcctacgacct	7	11	2	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	56086127	56086127	C	A	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	1	known	silent	c.345	p.L115	0.041	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	59	0	0	36	6	14.29	-	-	-	A	56086127	C	A	56086127	2	1	424	1	0	0	0	0	0	0	0	1	11317	900	32	2		2	OR8K3	11	56086127	Silent	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	55551841	56086127	78920389	34	41677										
ZFP91	0	genome.wustl.edu	37	chr11	58347039	58347039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	cccgacgtccccgggcagcaGccccaggccgcgaagtcccc	12	21	0	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	58347039	58347039	G	A	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	silent	c.285	p.Q95	0.959	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	12	0	0	10	4	28.57	-	-	-	A	58347039	G	A	58347039	2	1	424	1	0	0	0	0	0	0	0	1	17751	962	34	4		4	ZFP91	11	58347039	Silent	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09	2260912	58347039	76659477	35	41678										
MTA2	0	genome.wustl.edu	37	chr11	62365548	62365548	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tatttgcaaccaactctaatCtcgccctgatcagcgagaag	7	12	3	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	62365548	62365548	C	T	SNP	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	silent	c.438	p.E146	1.000	pfscan_ELM2_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	78	0	0	65	8	10.96	-	-	-	T	62365548	C	T	62365548	2	4	424	1	0	0	0	0	0	0	0	1	9981	912	32	2		2	MTA2	11	62365548	Silent	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	4018509	62365548	72640968	36	41679										
CPT1A	0	genome.wustl.edu	37	chr11	68552320	68552320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ggctgccagcctggcctcccCgggctgaggctccgaggtat	15	15	0	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	68552320	68552320	C	A	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	missense	c.1126	p.G376W	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	39	0	0	42	7	14.29	-	-	-	A	68552320	C	A	68552320	3	1	424	1	0	0	0	0	1	0	0	0	3861	652	23	3	1275	3	CPT1A	11	68552320	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	6186772	68552320	66454196	37	41680										
NALCN	0	genome.wustl.edu	37	chr13	101755600	101755600	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	caccagtttgaatatgcgcaGaggtctcaggcaccgaagga	12	10	1	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	13	101755600	101755600	G	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.2980	p.L994	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	49	0	0	18	4	18.18	-	-	-	A	101755600	G	A	101755600	2	1	424	1	0	0	0	0	0	0	0	1	10220	933	33	2		2	NALCN	13	101755600	Silent	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09		101755600	13414278	38	41681										
RALGAPA1	0	genome.wustl.edu	37	chr14	36159078	36159078	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	agtgaatggttccaagatgtCagaagtgctgctacttcgag	12	7	1	3			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	36159078	36159078	C	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.2539	p.D847Y	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	49	0	0	38	5	11.63	-	-	-	A	36159078	C	A	36159078	3	1	424	1	0	0	0	0	1	0	0	0	13096	826	29	2	3961	2	RALGAPA1	14	36159078	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		36159078	71190462	39	41682										
PSMC6	0	genome.wustl.edu	37	chr14	53184802	53184802	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tcttttgtcattcttaggtaCgggaaaaacactcttggcac	8	9	4	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	53184802	53184802	C	G	SNP	PSMC6	ENST00000556813	human	ensembl	69_37n	1	novel	nonsense	c.531	p.Y177*	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMC6	HGNC	ENSG00000100519	51	0	0	30	5	14.29	-	-	-	G	53184802	C	G	53184802	4	3	424	1	0	0	0	0	0	1	0	0	12771	536	19	3	605	3	PSMC6	14	53184802	Nonsense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	17025724	53184802	54164738	40	41683										
SPTLC2	0	genome.wustl.edu	37	chr14	78028748	78028748	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	agcaaactcactgttgtgttTgaagattctaatggttgctc	9	7	2	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	78028748	78028748	T	C	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.841	p.K281E	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	56	0	0	37	10	21.28	-	-	-	C	78028748	T	C	78028748	3	2	424	1	0	0	0	0	1	0	0	0	15215	1821	63	5	875	5	SPTLC2	14	78028748	Missense_Mutation	SNP	T	TCGA-AR-A5QQ-01A-11D-A28B-09	24843946	78028748	29320792	41	41684										
EML5	0	genome.wustl.edu	37	chr14	89163200	89163200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	aacagccttacctgagaaatCaacggcactaacaccatact	5	13	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	89163200	89163200	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.2335	p.D779N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	55	0	0	36	8	18.18	-	-	-	T	89163200	C	T	89163200	3	4	424	1	0	0	0	0	1	0	0	0	5137	826	29	2	3714	2	EML5	14	89163200	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	11134452	89163200	18186340	42	41685										
APBA2	0	genome.wustl.edu	37	chr15	29347021	29347021	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ggaccccagaagagaggctgAagtggccccacgagcaggta	15	11	0	3			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	15	29347021	29347021	A	G	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.934	p.K312E	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	77	0	0	73	9	10.98	-	-	-	G	29347021	A	G	29347021	3	3	424	1	0	0	0	0	1	0	0	0	758	247	9	5	936	5	APBA2	15	29347021	Missense_Mutation	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09		29347021	73184371	43	41686										
CHRFAM7A	0	genome.wustl.edu	37	chr15	30665226	30665226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	gatatagccactgatatctgCctcctgcatctgcagatcca	7	13	2	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	15	30665226	30665226	C	T	SNP	CHRFAM7A	ENST00000299847	human	ensembl	69_37n	-1	known	missense	c.283	p.A95T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664	55	0	0	41	11	21.15	-	-	-	T	30665226	C	T	30665226	3	4	424	1	0	0	0	0	1	0	0	0	3404	739	26	4	975	4	CHRFAM7A	15	30665226	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	1318205	30665226	71866166	44	41687										
TP53	0	genome.wustl.edu	37	chr17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-													0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	acactatgtcgaaaagtgttTctgtcatccaaatactccac							TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	7578222	7578223	TC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	69	0	0	30	6	16.67	-	-	-	-	7578223	TC	-	7578222	7	5	424	1	0	1	0	1	0	0	0	0	16477	1780	62	0	667	0	TP53	17	7578222	Frame_Shift_Del	DEL	TC	TCGA-AR-A5QQ-01A-11D-A28B-09		7578222	73616988	45	41688										
EFCAB5	0	genome.wustl.edu	37	chr17	28405362	28405363	+	Frame_Shift_Del	DEL	GT	GT	-													0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tgaagaccaagttctggaaaGtgttgtggaatttctgatga							TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	28405362	28405363	GT	-	DEL	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	frame_shift_del	c.2867_2868	p.V957fs	0.238:0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	51	0	0	32	7	17.95	-	-	-	-	28405363	GT	-	28405362	7	5	424	1	0	1	0	1	0	0	0	0	4973	1029	36	0	3092	0	EFCAB5	17	28405362	Frame_Shift_Del	DEL	GT	TCGA-AR-A5QQ-01A-11D-A28B-09	20827140	28405362	52789848	46	41689										
XYLT2	0	genome.wustl.edu	37	chr17	48433607	48433607	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	aacgacttcaagccacaggaCttcctccggctgcaggtgct	10	14	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	48433607	48433607	C	T	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	silent	c.1467	p.D489	1.000	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	42	0	0	28	5	15.15	-	-	-	T	48433607	C	T	48433607	2	4	424	1	0	0	0	0	0	0	0	1	17561	564	20	4		4	XYLT2	17	48433607	Silent	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	20028245	48433607	32761603	47	41690										
LAMA1	0	genome.wustl.edu	37	chr18	6943262	6943262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tttcagcgccaactgcgttcCcgtcaacaatcagagtgata	8	12	3	2			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	18	6943262	6943262	C	G	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.8984	p.G2995A	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	137	0	0	91	22	19.47	-	-	-	G	6943262	C	G	6943262	3	3	424	1	0	0	0	0	1	0	0	0	8659	623	22	4	251	4	LAMA1	18	6943262	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		6943262	71133986	48	41691										
FCGBP	0	genome.wustl.edu	37	chr19	40357467	40357467	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tccgttttgccatggcagatCtggacttcggcaactacacg	10	12	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	19	40357467	40357467	C	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.15846	p.Q5282H	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	48	0	0	36	13	26.53	-	-	-	G	40357467	C	G	40357467	3	3	424	1	0	0	0	0	1	0	0	0	5824	912	32	2	383	2	FCGBP	19	40357467	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09		40357467	18771516	49	41692										
MAVS	0	genome.wustl.edu	37	chr20	3845133	3845133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	agcctatcatctgctccagtGgggcagaggcacctgccaac	11	14	2	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	20	3845133	3845133	G	T	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	missense	c.856	p.G286W	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	42	0	0	47	7	12.96	-	-	-	T	3845133	G	T	3845133	3	4	424	1	0	0	0	0	1	0	0	0	9409	1348	47	4	874	4	MAVS	20	3845133	Missense_Mutation	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09		3845133	59180387	50	41693										
KIAA1210	0	genome.wustl.edu	37	chrX	118221920	118221920	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	tacagttcctcaaatttaggGgtcacccatggcggggaagt	12	9	2	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	118221920	118221920	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	silent	c.3273	p.T1091	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	57	0	0	21	6	22.22	-	-	-	T	118221920	G	T	118221920	2	4	424	1	0	0	0	0	0	0	0	1	8266	1219	43	4		4	KIAA1210	23	118221920	Silent	SNP	G	TCGA-AR-A5QQ-01A-11D-A28B-09		118221920	37048640	51	41694										
ODZ1	0	genome.wustl.edu	37	chrX	123539064	123539064	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	atctccatcccgctggcaaaAgtgacacgcagggaaccatc	9	14	1	1			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	123539064	123539064	A	C	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.5208	p.T1736	0.302	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	35	0	0	34	7	17.07	-	-	-	C	123539064	A	C	123539064	2	2	424	1	0	0	0	0	0	0	0	1	10907	59	3	5		5	ODZ1	23	123539064	Silent	SNP	A	TCGA-AR-A5QQ-01A-11D-A28B-09	5317144	123539064	31731496	52	41695										
CNGA2	0	genome.wustl.edu	37	chrX	150911871	150911871	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.113207547169811	6	0.22166911584178	2.05632	1.55781818181818	2.448	0.608391608391609	1	0	ctattatgccatctccaaatCcataggctttggggtcgaca	8	11	1	0			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	150911871	150911871	C	G	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	missense	c.896	p.S299C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	61	0	0	43	12	21.82	-	-	-	G	150911871	C	G	150911871	3	3	424	1	0	0	0	0	1	0	0	0	3627	855	30	2	918	2	CNGA2	23	150911871	Missense_Mutation	SNP	C	TCGA-AR-A5QQ-01A-11D-A28B-09	27372807	150911871	4358689	53	41696										
FAM131C	0	genome.wustl.edu	37	chr1	16386008	16386008	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ccttggagctggacgatgccTtgggggctgttctcggggtg	18	9	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	1	16386008	16386008	T	C	SNP	FAM131C	ENST00000375662	human	ensembl	69_37n	-1	known	silent	c.543	p.Q181	0.563	NULL	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519	40	0	0	40	8	16.67	-	-	-	C	16386008	T	C	16386008	2	2	425	1	0	0	0	0	0	0	0	1	5481	1606	56	5		5	FAM131C	1	16386008	Silent	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09		16386008	232864613	1	41697										
ARHGEF19	0	genome.wustl.edu	37	chr1	16525100	16525100	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	catcacacaggagcctccccCagtttgctggtggcacttgt	10	14	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	1	16525100	16525100	C	A	SNP	ARHGEF19	ENST00000270747	human	ensembl	69_37n	-1	known	silent	c.2391	p.L797	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	27	0	0	36	4	10	-	-	-	A	16525100	C	A	16525100	2	1	425	1	0	0	0	0	0	0	0	1	904	581	21	4		4	ARHGEF19	1	16525100	Silent	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	139092	16525100	232725521	2	41698										
PUM1	0	genome.wustl.edu	37	chr1	31465250	31465250	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	acagtacctgttgttgagaaTtgtagtcaaaaagtcccaca	8	8	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	1	31465250	31465250	T	C	SNP	PUM1	ENST00000426105	human	ensembl	69_37n	-1	known	missense	c.1145	p.N382S	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	36	0	0	51	30	37.04	-	-	-	C	31465250	T	C	31465250	3	2	425	1	0	0	0	0	1	0	0	0	12908	1493	52	5	2485	5	PUM1	1	31465250	Missense_Mutation	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09	14940150	31465250	217785371	3	41699										
TTC22	0	genome.wustl.edu	37	chr1	55253397	55253397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tccccacctcggtggcggggGtcctcggacttcagcacttg	13	15	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	1	55253397	55253397	G	T	SNP	TTC22	ENST00000371276	human	ensembl	69_37n	-1	known	missense	c.726	p.D242E	0.007	NULL	smart_TPR_repeat	-	no_errors	TTC22	HGNC	ENSG00000006555	67	0	0	88	36	29.03	-	-	-	T	55253397	G	T	55253397	3	4	425	1	0	0	0	0	1	0	0	0	16786	1252	44	4	1106	4	TTC22	1	55253397	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	23788147	55253397	193997224	4	41700										
CYP1B1	0	genome.wustl.edu	37	chr2	38298207	38298207	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gggttaggccacttcactggGtcatgattcacagaccactg	11	11	3	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	2	38298207	38298207	G	C	SNP	CYP1B1	ENST00000260630	human	ensembl	69_37n	-1	known	missense	c.1290	p.D430E	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1B1	HGNC	ENSG00000138061	26	0	0	51	22	30.14	-	-	-	C	38298207	G	C	38298207	3	2	425	1	0	0	0	0	1	0	0	0	4182	1252	44	4	345	4	CYP1B1	2	38298207	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		38298207	204901166	5	41701										
MYL1	0	genome.wustl.edu	37	chr2	211163235	211163235	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	acatcaccgacctggcttaaGgtgatcttggaatcacctgt	9	11	3	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	2	211163235	211163235	G	T	SNP	MYL1	ENST00000352451	human	ensembl	69_37n	-1	known	silent	c.213	p.T71	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL1	HGNC	ENSG00000168530	39	0	0	22	4	15.38	-	-	-	T	211163235	G	T	211163235	2	4	425	1	0	0	0	0	0	0	0	1	10115	987	35	4		4	MYL1	2	211163235	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	172865028	211163235	32036138	6	41702										
EPHA4	0	genome.wustl.edu	37	chr2	222283000	222283000	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	caatgttctgttaatttcttAttcagtatgaactaaattat	4	5	3	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	2	222283000	222283000	A	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	32	0	0	41	5	10.87	-	-	-	T	222283000	A	T	222283000	1	4	425	0	1	0	0	0	0	0	0	0	5206	464	16	5		5	EPHA4	2	222283000	RNA	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09	11119765	222283000	20916373	7	41703										
FANCD2	0	genome.wustl.edu	37	chr3	10114587	10114587	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	atgtccctcctcttggaaacTttgatgtggaaactttagat	8	8	1	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	3	10114587	10114587	T	A	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.2527	p.F843I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	41	0	0	48	26	35.14	-	-	-	A	10114587	T	A	10114587	3	1	425	1	0	0	0	0	1	0	0	0	5711	1609	56	5	2629	5	FANCD2	3	10114587	Missense_Mutation	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09		10114587	187907843	8	41704										
SLC6A6	0	genome.wustl.edu	37	chr3	14508135	14508135	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	agttctatctgtatcctgacAtcacccgccttgaggaccca	7	14	3	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	3	14508135	14508135	A	T	SNP	SLC6A6	ENST00000360861	human	ensembl	69_37n	1	known	missense	c.844	p.I282F	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389	15	0	0	16	15	48.39	-	-	-	T	14508135	A	T	14508135	3	4	425	1	0	0	0	0	1	0	0	0	14777	217	8	5	866	5	SLC6A6	3	14508135	Missense_Mutation	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09	4393548	14508135	183514295	9	41705										
SCN10A	0	genome.wustl.edu	37	chr3	38793763	38793763	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	agtgggcggcggttggtgttCatcttctccatgcctggagt	15	9	3	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	3	38793763	38793763	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.1702	p.E568K	0.641	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	30	0	0	17	13	43.33	-	-	-	T	38793763	C	T	38793763	3	4	425	1	0	0	0	0	1	0	0	0	14000	835	29	2	4236	2	SCN10A	3	38793763	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	24285628	38793763	159228667	10	41706										
ABI3BP	0	genome.wustl.edu	37	chr3	100539121	100539121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tttagttttgggacgtggacGacgagttcgttgtgatgttt	14	4	0	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	3	100539121	100539121	G	A	SNP	ABI3BP	ENST00000383691	human	ensembl	69_37n	-1	known	missense	c.826	p.R276C	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	16	0	0	14	11	44	-	-	-	A	100539121	G	A	100539121	3	1	425	1	0	0	0	0	1	0	0	0	91	1073	37	1		1	ABI3BP	3	100539121	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	61745358	100539121	97483309	11	41707										
KIAA2018	0	genome.wustl.edu	37	chr3	113374402	113374402	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	attaggtacttgtgggctatCaggcatgaaacgaacaatac	10	7	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	3	113374402	113374402	C	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.6127	p.D2043H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	32	0	0	62	9	12.5	-	-	-	G	113374402	C	G	113374402	3	3	425	1	0	0	0	0	1	0	0	0	8320	826	29	2	614	2	KIAA2018	3	113374402	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	12835281	113374402	84648028	12	41708										
FRAS1	0	genome.wustl.edu	37	chr4	79396713	79396713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ccgccagctccagctccaggGtcagctcccaacctgggcaa	10	18	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	4	79396713	79396713	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.7804	p.V2602I	0.003	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	24	0	0	43	8	15.69	-	-	-	A	79396713	G	A	79396713	3	1	425	1	0	0	0	0	1	0	0	0	6090	1261	44	4	8093	4	FRAS1	4	79396713	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		79396713	111757563	13	41709										
LPCAT1	0	genome.wustl.edu	37	chr5	1466933	1466933	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ggtcacggtgagctctgccaCccccagggccgtcttgagga	14	14	3	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	5	1466933	1466933	C	A	SNP	LPCAT1	ENST00000283415	human	ensembl	69_37n	-1	known	missense	c.1351	p.V451L	0.991	pfscan_EF_HAND_2	pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	LPCAT1	HGNC	ENSG00000153395	55	0	0	105	16	13.22	-	-	-	A	1466933	C	A	1466933	3	1	425	1	0	0	0	0	1	0	0	0	8976	507	18	4	261	4	LPCAT1	5	1466933	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		1466933	179448327	14	41710										
ADAMTS16	0	genome.wustl.edu	37	chr5	5209207	5209207	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	catctcctctttgtttcagcAccgctcaagctatctgcctt	5	15	5	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	5	5209207	5209207	A	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.1453	p.T485S	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	42	0	0	91	25	21.55	-	-	-	T	5209207	A	T	5209207	3	4	425	1	0	0	0	0	1	0	0	0	261	173	6	5	1491	5	ADAMTS16	5	5209207	Missense_Mutation	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09	3742274	5209207	175706053	15	41711										
UBR5	0	genome.wustl.edu	37	chr8	103284779	103284779	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gtgtgggtgcctttgttggcAttttggatacactctagatt	12	6	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	8	103284779	103284779	A	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.6951	p.N2317K	1.000	superfamily_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	97	0	0	313	61	16.31	-	-	-	T	103284779	A	T	103284779	3	4	425	1	0	0	0	0	1	0	0	0	17002	214	8	5	1496	5	UBR5	8	103284779	Missense_Mutation	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09		103284779	43079243	16	41712										
FBXO32	0	genome.wustl.edu	37	chr8	124518725	124518725	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ggggcagcctggcccaggctGaccaggtcccgcccgtcgct	15	17	0	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	8	124518725	124518725	G	T	SNP	FBXO32	ENST00000517956	human	ensembl	69_37n	-1	known	silent	c.741	p.V247	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO32	HGNC	ENSG00000156804	32	0	0	131	15	10.27	-	-	-	T	124518725	G	T	124518725	2	4	425	1	0	0	0	0	0	0	0	1	5788	1277	45	2		2	FBXO32	8	124518725	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	21233946	124518725	21845297	17	41713										
PCSK5	0	genome.wustl.edu	37	chr9	78790036	78790036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	cagacgactatggcacagagGattatgcaggtgagctggct	14	8	0	3			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	9	78790036	78790036	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.1891	p.D631N	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	22	0	0	19	11	36.67	-	-	-	A	78790036	G	A	78790036	3	1	425	1	0	0	0	0	1	0	0	0	11676	1174	41	2	1945	2	PCSK5	9	78790036	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		78790036	62423395	18	41714										
GABBR2	0	genome.wustl.edu	37	chr9	101151241	101151241	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	agagaggtagggagatcttcCgcagctgctccaggatgatg	15	8	1	3			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	9	101151241	101151241	C	A	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	missense	c.1424	p.R475L	0.998	NULL	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	126	0	0	99	77	43.75	-	-	-	A	101151241	C	A	101151241	3	1	425	1	0	0	0	0	1	0	0	0	6205	652	23	3	1441	3	GABBR2	9	101151241	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	22361205	101151241	40062190	19	41715										
PITRM1	0	genome.wustl.edu	37	chr10	3205851	3205851	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gagagaagccatgccataaaCtgttaagaacacaaacaagt	8	8	0	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	10	3205851	3205851	C	G	SNP	PITRM1	ENST00000488065	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959	9	0	0	9	10	52.63	-	-	-	G	3205851	C	G	3205851	1	3	425	0	1	0	0	0	0	0	0	0	12027	580	20	4		4	PITRM1	10	3205851	RNA	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		3205851	132328896	20	41716										
CDH23	0	genome.wustl.edu	37	chr10	73326568	73326568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	acttgggggcagggggcagcGtcctctactccttccagccc	13	15	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	10	73326568	73326568	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.514	p.V172I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	39	0	0	43	13	23.21	-	-	-	A	73326568	G	A	73326568	3	1	425	1	0	0	0	0	1	0	0	0	3137	1145	40	1	521	1	CDH23	10	73326568	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	70120717	73326568	62208179	21	41717										
LIPN	0	genome.wustl.edu	37	chr10	90530616	90530616	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tcataggctgtttttggtacCaaaggtttctttttagaaga	9	5	2	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	10	90530616	90530616	C	A	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	silent	c.687	p.T229	0.999	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	17	0	0	16	26	61.9	-	-	-	A	90530616	C	A	90530616	2	1	425	1	0	0	0	0	0	0	0	1	8884	581	21	4		4	LIPN	10	90530616	Silent	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	17204048	90530616	45004131	22	41718										
PCNXL3	0	genome.wustl.edu	37	chr11	65404257	65404258	+	Frame_Shift_Ins	INS	-	-	T													0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	cgcctctagacctcagcctcINSagcctcagcctcagcctcag							TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	11	65404257	65404258	-	T	INS	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	frame_shift_ins	c.5913_5914	p.S1971fs	0.980:0.982	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	26	0	0	54	6	10	-	-	-	T	65404258	-	T	65404257	7	5	425	1	0	1	1	0	0	0	0	0	11666	813	29	0	6051	0	PCNXL3	11	65404257	Frame_Shift_Ins	INS	-	TCGA-B6-A0I1-01A-11D-A21Q-09		65404257	69602259	23	41719										
DDX25	0	genome.wustl.edu	37	chr11	125792932	125792932	+	RNA	DEL	T	T	-													0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tagttttaagacatgaggtcTttttgaagccaaattgatgt							TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	11	125792932	125792932	T	-	DEL	DDX25	ENST00000525943	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	DDX25	HGNC	ENSG00000109832	9	0	0	30	16	34.04	-	-	-	-	125792932	T	-	125792932	6	5	425	0	1	1	0	1	0	0	0	0	4383	1624	56	0		0	DDX25	11	125792932	RNA	DEL	T	TCGA-B6-A0I1-01A-11D-A21Q-09	60388675	125792932	9213584	24	41720										
FGF23	0	genome.wustl.edu	37	chr12	4479578	4479578	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gcgtgcgtgttcactcgaccGcccctgaccacccctaatgg	10	17	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	4479578	4479578	G	A	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.687	p.G229	0.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	101	0	0	77	56	42.11	-	-	-	A	4479578	G	A	4479578	2	1	425	1	0	0	0	0	0	0	0	1	5898	1074	38	1		1	FGF23	12	4479578	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		4479578	129372317	25	41721										
KCNA1	0	genome.wustl.edu	37	chr12	5020726	5020726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	cctggcgcagttccccaacaCgctgctgggcaaccctaaga	10	16	0	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	5020726	5020726	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.182	p.T61M	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	61	0	0	75	53	41.41	-	-	-	T	5020726	C	T	5020726	3	4	425	1	0	0	0	0	1	0	0	0	8055	536	19	1	184	1	KCNA1	12	5020726	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	541148	5020726	128831169	26	41722										
PRB3	0	genome.wustl.edu	37	chr12	11420899	11420899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gtccttctggctttcccggaCgaggtgggggaccttgggac	16	11	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	11420899	11420899	C	T	SNP	PRB3	ENST00000381842	human	ensembl	69_37n	-1	known	missense	c.284	p.R95H	0.021	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	38	0	0	96	42	29.79	-	-	-	T	11420899	C	T	11420899	3	4	425	1	0	0	0	0	1	0	0	0	12525	536	19	1	653	1	PRB3	12	11420899	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	6400173	11420899	122430996	27	41723										
NACA	0	genome.wustl.edu	37	chr12	57110262	57110262	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tctggagctggggcaacaagTacttctttcagagctgtggg	14	8	3	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	57110262	57110262	T	C	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	silent	c.5052	p.V1684	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	50	0	0	91	23	20.18	-	-	-	C	57110262	T	C	57110262	2	2	425	1	0	0	0	0	0	0	0	1	10205	1625	57	5		5	NACA	12	57110262	Silent	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09	45689363	57110262	76741633	28	41724										
NUAK1	0	genome.wustl.edu	37	chr12	106461705	106461705	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	cggcgatcggggttcaccatCagcatccaccgtatgagtcc	11	14	2	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	106461705	106461705	C	A	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	silent	c.861	p.L287	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	29	0	0	31	4	11.43	-	-	-	A	106461705	C	A	106461705	2	1	425	1	0	0	0	0	0	0	0	1	10785	813	29	2		2	NUAK1	12	106461705	Silent	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	49351443	106461705	27390190	29	41725										
SART3	0	genome.wustl.edu	37	chr12	108930340	108930340	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gcagcttggatcaccactctCattgaaaccttcaaaaacag	6	12	3	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	12	108930340	108930340	C	T	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.1396	p.E466K	1.000	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	36	0	0	22	14	38.89	-	-	-	T	108930340	C	T	108930340	3	4	425	1	0	0	0	0	1	0	0	0	13934	835	29	2	1531	2	SART3	12	108930340	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	2468635	108930340	24921555	30	41726										
NALCN	0	genome.wustl.edu	37	chr13	101828727	101828727	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	caaacaaactcaggaggatcTataaaatggtgaaataacaa	7	6	2	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	13	101828727	101828727	T	G	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	splice_site	c.1765-2	e14-2	1.000	-	-	-	no_errors	NALCN	HGNC	ENSG00000102452	13	0	0	6	6	50	-	-	-	G	101828727	T	G	101828727	5	3	425	1	0	0	0	0	0	0	1	0	10220	1536	53	5	3573	5	NALCN	13	101828727	Splice_Site	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09		101828727	13341151	31	41727										
DMXL2	0	genome.wustl.edu	37	chr15	51751869	51751869	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ttctatagactaaataccacCacaccgtcacaaacacaaaa	2	13	2	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	15	51751869	51751869	C	A	SNP	DMXL2	ENST00000558124	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DMXL2	HGNC	ENSG00000104093	34	0	0	24	3	11.11	-	-	-	A	51751869	C	A	51751869	1	1	425	0	1	0	0	0	0	0	0	0	4631	609	21	4		4	DMXL2	15	51751869	RNA	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		51751869	50779523	32	41728										
TSC2	0	genome.wustl.edu	37	chr16	2108763	2108763	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tttagagcctacatggaggaCgcgcccctgctgagaggagc	14	11	0	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	16	2108763	2108763	C	T	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	silent	c.864	p.D288	0.383	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	43	0	0	45	21	31.82	-	-	-	T	2108763	C	T	2108763	2	4	425	1	0	0	0	0	0	0	0	1	16702	535	19	1		1	TSC2	16	2108763	Silent	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		2108763	88245990	33	41729										
MC1R	0	genome.wustl.edu	37	chr16	89981248	89981249	+	RNA	DEL	TG	TG	-													0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	catttgtgtgtgtgtgtgccTgtgtgtgtgggtgcacattt							TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	16	89981248	89981249	TG	-	DEL	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.920:0.929	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	21	0	0	116	21	15.22	-	-	-	-	89981249	TG	-	89981248	6	5	425	0	1	1	0	1	0	0	0	0	9434	1595	55	0		0	MC1R	16	89981248	RNA	DEL	TG	TCGA-B6-A0I1-01A-11D-A21Q-09	87872485	89981248	373505	34	41730										
FXR2	0	genome.wustl.edu	37	chr17	7499186	7499186	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ggtctcttcacccaactcaaTggcggtcaccccaggtactt	8	15	4	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	17	7499186	7499186	T	C	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	missense	c.787	p.I263V	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	61	0	0	67	30	30.61	-	-	-	C	7499186	T	C	7499186	3	2	425	1	0	0	0	0	1	0	0	0	6165	1464	51	5	1174	5	FXR2	17	7499186	Missense_Mutation	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09		7499186	73696024	35	41731										
LLGL2	0	genome.wustl.edu	37	chr17	73560623	73560623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ggagtgggtgcccagggttaGgtgtgggaggcatggggcag	23	5	0	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	17	73560623	73560623	G	A	SNP	LLGL2	ENST00000375227	human	ensembl	69_37n	1	known	silent	c.1071	p.*357	0.001	NULL	pfam_LLGL2,superfamily_WD40_repeat_dom,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	86	0	0	58	62	51.67	-	-	-	A	73560623	G	A	73560623	2	1	425	1	0	0	0	0	0	0	0	1	8890	995	35	4		4	LLGL2	17	73560623	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	66061437	73560623	7634587	36	41732										
FBF1	0	genome.wustl.edu	37	chr17	73915866	73915866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gttcggcctcctggcactgcGacagataccgagctgacagc	12	14	0	2			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	17	73915866	73915866	G	A	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.1979	p.S660L	0.365	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	53	0	0	38	35	47.95	-	-	-	A	73915866	G	A	73915866	3	1	425	1	0	0	0	0	1	0	0	0	5741	1059	37	1	1469	1	FBF1	17	73915866	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	355243	73915866	7279344	37	41733										
ZNF407	0	genome.wustl.edu	37	chr18	72345206	72345206	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	agcttgtaatctttattcatTgagcaaagaaggaatggaga	10	4	2	3			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	18	72345206	72345206	T	G	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.2231	p.L744W	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	26	0	0	32	11	25.58	-	-	-	G	72345206	T	G	72345206	3	3	425	1	0	0	0	0	1	0	0	0	17983	1821	63	5	2233	5	ZNF407	18	72345206	Missense_Mutation	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09		72345206	5732042	38	41734										
MKNK2	0	genome.wustl.edu	37	chr19	2042426	2042426	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ccctccccgcgggccctcacCggagtgagcagctccggggt	14	18	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	19	2042426	2042426	C	G	SNP	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	silent	c.750	p.P250	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	51	0	0	22	34	60.71	-	-	-	G	2042426	C	G	2042426	2	3	425	1	0	0	0	0	0	0	0	1	9676	666	23	3		3	MKNK2	19	2042426	Silent	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		2042426	57086557	39	41735										
KRI1	0	genome.wustl.edu	37	chr19	10668659	10668659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gatacctacgttgaagttggGgtcctcacagtgcagctcct	11	11	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	19	10668659	10668659	G	C	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	missense	c.1366	p.P456A	0.996	pfam_KRR1-interact_protein_1	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	65	0	0	47	24	33.33	-	-	-	C	10668659	G	C	10668659	3	2	425	1	0	0	0	0	1	0	0	0	8497	1232	43	4	787	4	KRI1	19	10668659	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	8626233	10668659	48460324	40	41736										
KRI1	0	genome.wustl.edu	37	chr19	10676408	10676409	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gcaccacgcgctcgtcgcttINSgagtccgactcggagctgga							TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	19	10676408	10676409	-	G	INS	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	frame_shift_ins	c.171_170	p.S58fs	1.000:1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	46	0	0	47	14	22.95	-	-	-	G	10676409	-	G	10676408	7	5	425	1	0	1	1	0	0	0	0	0	8497	1799	63	0	2030	0	KRI1	19	10676408	Frame_Shift_Ins	INS	-	TCGA-B6-A0I1-01A-11D-A21Q-09	7749	10676408	48452575	41	41737										
ANKRD27	0	genome.wustl.edu	37	chr19	33098608	33098608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ctgcgttcctggcacctgcgTtggccccgtgcttcagcagg	13	15	1	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	19	33098608	33098608	T	C	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	missense	c.2306	p.N769S	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	55	0	0	78	23	22.77	-	-	-	C	33098608	T	C	33098608	3	2	425	1	0	0	0	0	1	0	0	0	655	1725	60	5	874	5	ANKRD27	19	33098608	Missense_Mutation	SNP	T	TCGA-B6-A0I1-01A-11D-A21Q-09	22422200	33098608	26030375	42	41738										
MYH7B	0	genome.wustl.edu	37	chr20	33575610	33575610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tggccaaggccacctatgacCggctgttcaggtggctggtg	15	11	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	20	33575610	33575610	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.1435	p.R479W	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	40	0	0	86	32	27.12	-	-	-	T	33575610	C	T	33575610	3	4	425	1	0	0	0	0	1	0	0	0	10112	643	23	1	1497	1	MYH7B	20	33575610	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		33575610	29449910	43	41739										
WFDC5	0	genome.wustl.edu	37	chr20	43738395	43738395	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	aggaagggtgggaagctcgtAtggcagtggtgcagagtact	18	5	0	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	20	43738395	43738395	A	G	SNP	WFDC5	ENST00000307971	human	ensembl	69_37n	-1	known	missense	c.653	p.I218T	0.000	NULL	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC5	HGNC	ENSG00000175121	66	0	0	136	50	26.88	-	-	-	G	43738395	A	G	43738395	3	3	425	1	0	0	0	0	1	0	0	0	17451	464	16	5		5	WFDC5	20	43738395	Missense_Mutation	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09	10162785	43738395	19287125	44	41740										
TH1L	0	genome.wustl.edu	37	chr20	57564939	57564939	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gtgtgccacggggagcacacGtacctgtttgcccaggccat	13	13	0	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	20	57564939	57564939	G	A	SNP	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	silent	c.711	p.T237	0.081	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	22	0	0	48	14	22.58	-	-	-	A	57564939	G	A	57564939	2	1	425	1	0	0	0	0	0	0	0	1	15934	1132	40	1		1	TH1L	20	57564939	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	13826544	57564939	5460581	45	41741										
MX1	0	genome.wustl.edu	37	chr21	42830560	42830560	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ccatgctgcagctcctgcagGacaaggacacctacagctgg	11	14	0	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	21	42830560	42830560	G	C	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	missense	c.1864	p.D622H	1.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	34	0	0	54	13	19.4	-	-	-	C	42830560	G	C	42830560	3	2	425	1	0	0	0	0	1	0	0	0	10069	1174	41	2	1914	2	MX1	21	42830560	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		42830560	5299335	46	41742										
PHF21B	0	genome.wustl.edu	37	chr22	45309797	45309797	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tgtgggcggccgcgactctgCcgtgctctcgggctgcgtct	16	14	3	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	22	45309797	45309797	C	A	SNP	PHF21B	ENST00000313237	human	ensembl	69_37n	-1	known	missense	c.736	p.A246S	0.004	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	67	0	0	66	64	49.23	-	-	-	A	45309797	C	A	45309797	3	1	425	1	0	0	0	0	1	0	0	0	11908	739	26	4	895	4	PHF21B	22	45309797	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09		45309797	5994769	47	41743										
GTSE1	0	genome.wustl.edu	37	chr22	46704338	46704338	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	gttgcccacatctgagagtcCctttgcctggagccctctgg	11	14	2	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	22	46704338	46704338	C	G	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.260	p.P87R	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	61	0	0	43	28	39.44	-	-	-	G	46704338	C	G	46704338	3	3	425	1	0	0	0	0	1	0	0	0	6936	623	22	4	270	4	GTSE1	22	46704338	Missense_Mutation	SNP	C	TCGA-B6-A0I1-01A-11D-A21Q-09	1394541	46704338	4600228	48	41744										
CELSR1	0	genome.wustl.edu	37	chr22	46785190	46785190	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ggcggccacccgcctacctcGtgaaagtcggcgtcctgcgt	13	16	0	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	22	46785190	46785190	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	silent	c.6552	p.H2184	0.678	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	121	0	0	154	79	33.91	-	-	-	A	46785190	G	A	46785190	2	1	425	1	0	0	0	0	0	0	0	1	3250	1136	40	1		1	CELSR1	22	46785190	Silent	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	80852	46785190	4519376	49	41745										
ZNF41	0	genome.wustl.edu	37	chrX	47308150	47308150	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	tttgatgtgtaatgaggtttGatttgagggtaaagactttc	12	2	0	5			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	X	47308150	47308150	G	A	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.1049	p.S350L	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	50	0	0	118	39	24.84	-	-	-	A	47308150	G	A	47308150	3	1	425	1	0	0	0	0	1	0	0	0	17985	1294	45	2	1324	2	ZNF41	23	47308150	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09		47308150	107962410	50	41746										
DGKK	0	genome.wustl.edu	37	chrX	50213256	50213256	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	ctggggcaacttctggagtcAgctctggggccggctctggg	17	11	4	0			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	X	50213256	50213256	A	T	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	41	0	0	145	62	29.81	-	-	-	T	50213256	A	T	50213256	1	4	425	0	1	0	0	0	0	0	0	0	4508	188	7	5		5	DGKK	23	50213256	RNA	SNP	A	TCGA-B6-A0I1-01A-11D-A21Q-09	2905106	50213256	105057304	51	41747										
PLXNA3	0	genome.wustl.edu	37	chrX	153689607	153689607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.582188278365789	1.51388888888889	1.29761904761905	1.60294117647059	0.545454545454546	1	0	cgctgttggacacagcgggcGagaaatttttcacgtccaag	12	10	1	1			TCGA-B6-A0I1-01A-11D-A21Q-09	TCGA-B6-A0I1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2290b078-6a5b-4c83-9dfb-b525bbf14e4e	82b4b870-3cc6-429f-bb9a-d53757437517	X	153689607	153689607	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.763	p.E255K	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	55	0	0	56	14	20	-	-	-	A	153689607	G	A	153689607	3	1	425	1	0	0	0	0	1	0	0	0	12195	1059	37	1	769	1	PLXNA3	23	153689607	Missense_Mutation	SNP	G	TCGA-B6-A0I1-01A-11D-A21Q-09	103476351	153689607	1580953	52	41748										
ASAP3	0	genome.wustl.edu	37	chr1	23759634	23759634	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gagtttttgactggcaagggCgggggacagtcctcactctc	14	10	2	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	1	23759634	23759634	C	A	SNP	ASAP3	ENST00000336689	human	ensembl	69_37n	-1	known	silent	c.2259	p.P753	0.860	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	83	0	0	22	15	40.54	-	-	-	A	23759634	C	A	23759634	2	1	426	1	0	0	0	0	0	0	0	1	1016	755	27	3		3	ASAP3	1	23759634	Silent	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		23759634	225490987	1	41749										
SERBP1	0	genome.wustl.edu	37	chr1	67895731	67895732	+	Frame_Shift_Ins	INS	-	-	G													0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ttgtcaaccacgccaacgctINSggggggcagcgggttcttgc							TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	1	67895731	67895732	-	G	INS	SERBP1	ENST00000370995	human	ensembl	69_37n	-1	known	frame_shift_ins	c.253_252	p.S84fs	0.614:0.912	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864	28	0	0	28	4	12.5	-	-	-	G	67895732	-	G	67895731	7	5	426	1	0	1	1	0	0	0	0	0	14163	1580	55	0	1005	0	SERBP1	1	67895731	Frame_Shift_Ins	INS	-	TCGA-B6-A0I2-01A-11W-A050-09	44136097	67895731	181354890	2	41750										
CNN3	0	genome.wustl.edu	37	chr1	95368739	95368739	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	agcctggctgtagcttgtttAtaagtctgaaaagaaaaata	9	5	1	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	1	95368739	95368739	A	C	SNP	CNN3	ENST00000370206	human	ensembl	69_37n	-1	known	missense	c.185	p.I62R	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin,prints_Calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN3	HGNC	ENSG00000117519	206	0	0	197	65	24.81	-	-	-	C	95368739	A	C	95368739	3	2	426	1	0	0	0	0	1	0	0	0	3641	449	16	5	824	5	CNN3	1	95368739	Missense_Mutation	SNP	A	TCGA-B6-A0I2-01A-11W-A050-09	27473008	95368739	153881882	3	41751										
SMYD3	0	genome.wustl.edu	37	chr1	246091315	246091315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tcgaacagttggggtcacagCtgtgattgagcaaagagata	13	6	1	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	1	246091315	246091315	C	A	SNP	SMYD3	ENST00000388985	human	ensembl	69_37n	-1	known	missense	c.620	p.S207I	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	128	0	0	151	19	11.11	-	-	-	A	246091315	C	A	246091315	3	1	426	1	0	0	0	0	1	0	0	0	14912	797	28	4	690	4	SMYD3	1	246091315	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	150722576	246091315	3159306	4	41752										
CNTNAP5	0	genome.wustl.edu	37	chr2	125555837	125555837	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tgacaacccaggcacccagtCttttgctctttatcaattct	5	13	4	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	2	125555837	125555837	C	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.3154	p.L1052I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	264	0	0	204	102	33.33	-	-	-	A	125555837	C	A	125555837	3	1	426	1	0	0	0	0	1	0	0	0	3680	913	32	2	3228	2	CNTNAP5	2	125555837	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		125555837	117643536	5	41753										
SF3B1	0	genome.wustl.edu	37	chr2	198267459	198267459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ccagggcagaggctacaacaGcaaaagctctagctgttgtg	12	10	1	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	2	198267459	198267459	G	A	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.1898	p.A633V	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	111	0	0	43	51	54.26	-	-	-	A	198267459	G	A	198267459	3	1	426	1	0	0	0	0	1	0	0	0	14237	971	34	4	2064	4	SF3B1	2	198267459	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	72711622	198267459	44931914	6	41754										
KIAA0947	0	genome.wustl.edu	37	chr5	5463316	5463316	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	cagtttattgctcttaaatgTaaataacaacatgaccactg	5	8	1	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	5	5463316	5463316	T	G	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.3869	p.V1290G	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	104	0	0	91	42	31.34	-	-	-	G	5463316	T	G	5463316	3	3	426	1	0	0	0	0	1	0	0	0	8254	1638	57	5	3919	5	KIAA0947	5	5463316	Missense_Mutation	SNP	T	TCGA-B6-A0I2-01A-11W-A050-09		5463316	175451944	7	41755										
MYO10	0	genome.wustl.edu	37	chr5	16671048	16671048	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	aagaacctggaggttttcttCcggggctggatggtggccat	15	8	1	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	5	16671048	16671048	C	G	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.5470	p.E1824Q	0.996	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	105	0	0	57	17	22.97	-	-	-	G	16671048	C	G	16671048	3	3	426	1	0	0	0	0	1	0	0	0	10134	864	30	2	718	2	MYO10	5	16671048	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	11207732	16671048	164244212	8	41756										
HIST1H4G	0	genome.wustl.edu	37	chr6	26247074	26247074	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	atgaggcccaagatgcgcttGacaccgccatgccgggccaa	12	14	0	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	6	26247074	26247074	G	C	SNP	HIST1H4G	ENST00000244537	human	ensembl	69_37n	-1	known	silent	c.132	p.V44	0.999	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	-	no_errors	HIST1H4G	HGNC	ENSG00000124578	67	0	0	38	23	37.7	-	-	-	C	26247074	G	C	26247074	2	2	426	1	0	0	0	0	0	0	0	1	7222	1277	45	2		2	HIST1H4G	6	26247074	Silent	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		26247074	144867993	9	41757										
C6orf165	0	genome.wustl.edu	37	chr6	88125281	88125281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tttttatttcattattacagCttaagaaattacttgttttc	3	5	1	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	6	88125281	88125281	C	T	SNP	C6orf165	ENST00000489338	human	ensembl	69_37n	1	known	missense	c.284	p.A95V	0.000	NULL	NULL	-	no_errors	C6orf165	HGNC	ENSG00000213204	32	0	0	14	4	22.22	-	-	-	T	88125281	C	T	88125281	3	4	426	1	0	0	0	0	1	0	0	0	2362	812	28	4		4	C6orf165	6	88125281	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	61878207	88125281	82989786	10	41758										
ZNF425	0	genome.wustl.edu	37	chr7	148801933	148801933	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ggtcagatggaccttcatgcCcctcttcaggcggaagcacc	11	14	4	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	7	148801933	148801933	C	G	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.1030	p.G344R	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	60	0	0	33	16	32.65	-	-	-	G	148801933	C	G	148801933	3	3	426	1	0	0	0	0	1	0	0	0	17995	623	22	4	1232	4	ZNF425	7	148801933	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		148801933	10336730	11	41759										
ACTR3B	0	genome.wustl.edu	37	chr7	152513624	152513624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	agtgggtgaacgtacgttaaCggggatagtcattgacagcg	15	6	1	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	7	152513624	152513624	C	T	SNP	ACTR3B	ENST00000256001	human	ensembl	69_37n	1	known	missense	c.491	p.T164M	0.990	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR3B	HGNC	ENSG00000133627	169	0	0	178	50	21.93	-	-	-	T	152513624	C	T	152513624	3	4	426	1	0	0	0	0	1	0	0	0	213	536	19	1	513	1	ACTR3B	7	152513624	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	3711691	152513624	6625039	12	41760										
SMARCA2	0	genome.wustl.edu	37	chr9	2076304	2076304	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	caaatagcgaagaagtttctGagaaggatgctaagcagatc	11	6	1	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	9	2076304	2076304	G	C	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.2011	p.E671Q	0.999	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	481	0	0	528	402	43.18	-	-	-	C	2076304	G	C	2076304	3	2	426	1	0	0	0	0	1	0	0	0	14858	1291	45	2	2057	2	SMARCA2	9	2076304	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		2076304	139137127	13	41761										
KIF27	0	genome.wustl.edu	37	chr9	86503485	86503485	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	acaaacagagtctggcttctGaatccatgaacgacttctac	7	11	3	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	9	86503485	86503485	G	C	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.2002	p.Q668E	0.993	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	86	0	0	132	27	16.98	-	-	-	C	86503485	G	C	86503485	3	2	426	1	0	0	0	0	1	0	0	0	8348	1299	45	2	2247	2	KIF27	9	86503485	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	84427181	86503485	54709946	14	41762										
DKK3	0	genome.wustl.edu	37	chr11	12020297	12020297	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gtgataactgtctctgaaaaGaccatttgtccagtctggtt	9	8	2	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	11	12020297	12020297	G	C	SNP	DKK3	ENST00000326932	human	ensembl	69_37n	-1	known	silent	c.381	p.V127	0.840	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165	203	0	0	111	627	84.84	-	-	-	C	12020297	G	C	12020297	2	2	426	1	0	0	0	0	0	0	0	1	4582	929	33	2		2	DKK3	11	12020297	Silent	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		12020297	122986219	15	41763										
API5	0	genome.wustl.edu	37	chr11	43340343	43340343	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tagacctctgtgaggatgaaGatgtatctgtaagtttatga	11	4	2	5			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	11	43340343	43340343	G	C	SNP	API5	ENST00000531273	human	ensembl	69_37n	1	known	missense	c.223	p.D75H	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	147	0	0	106	108	50.47	-	-	-	C	43340343	G	C	43340343	3	2	426	1	0	0	0	0	1	0	0	0	774	942	33	2	229	2	API5	11	43340343	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	31320046	43340343	91666173	16	41764										
MARK2	0	genome.wustl.edu	37	chr11	63669754	63669754	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	catccccatcccacaaggtaCagcgcagcgtgtcggccaat	9	16	0	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	11	63669754	63669754	C	T	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	nonsense	c.1186	p.Q396*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	314	0	0	120	62	34.07	-	-	-	T	63669754	C	T	63669754	4	4	426	1	0	0	0	0	0	1	0	0	9384	479	17	4	1232	4	MARK2	11	63669754	Nonsense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	20329411	63669754	71336762	17	41765										
KCTD21	0	genome.wustl.edu	37	chr11	77884970	77884970	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gatctgcttgttggcgggcaCcacccagagcctcttgaggt	13	12	2	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	11	77884970	77884970	C	A	SNP	KCTD21	ENST00000340067	human	ensembl	69_37n	-1	known	missense	c.631	p.V211L	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997	315	0	0	410	70	14.58	-	-	-	A	77884970	C	A	77884970	3	1	426	1	0	0	0	0	1	0	0	0	8163	507	18	4	155	4	KCTD21	11	77884970	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	14215216	77884970	57121546	18	41766										
PRB2	0	genome.wustl.edu	37	chr12	11546633	11546633	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tggaggaccttgaggctggtTgcctccttgtgggggtggtc	18	8	0	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	12	11546633	11546633	T	A	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.379	p.N127Y	0.000	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	921	0	0	1703	303	15.09	-	-	-	A	11546633	T	A	11546633	3	1	426	1	0	0	0	0	1	0	0	0	12524	1812	63	5	875	5	PRB2	12	11546633	Missense_Mutation	SNP	T	TCGA-B6-A0I2-01A-11W-A050-09		11546633	122305262	19	41767										
RARG	0	genome.wustl.edu	37	chr12	53607025	53607025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gggctcctccaggtccatgcGgtctatggggacaagtatac	13	11	1	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	12	53607025	53607025	G	A	SNP	RARG	ENST00000394426	human	ensembl	69_37n	-1	known	missense	c.1021	p.R341C	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC	ENSG00000172819	133	0	0	32	29	47.54	-	-	-	A	53607025	G	A	53607025	3	1	426	1	0	0	0	0	1	0	0	0	13137	1116	39	1	351	1	RARG	12	53607025	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	42060392	53607025	80244870	20	41768										
LRP1	0	genome.wustl.edu	37	chr12	57567573	57567573	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tgtccctcagctcggtgcatCagcaaagcgtgggtgtgtga	14	10	2	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	12	57567573	57567573	C	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.3357	p.I1119	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	198	0	0	42	22	34.38	-	-	-	A	57567573	C	A	57567573	2	1	426	1	0	0	0	0	0	0	0	1	9017	816	29	2		2	LRP1	12	57567573	Silent	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	3960548	57567573	76284322	21	41769										
ENOX1	0	genome.wustl.edu	37	chr13	43930276	43930276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tgtcggtgctagaccctaatCgcatcctataacctgaaacc	7	13	0	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	13	43930276	43930276	C	T	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	missense	c.602	p.R201Q	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	50	0	0	27	14	34.15	-	-	-	T	43930276	C	T	43930276	3	4	426	1	0	0	0	0	1	0	0	0	5163	884	31	1	1369	1	ENOX1	13	43930276	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		43930276	71239602	22	41770										
PRKD1	0	genome.wustl.edu	37	chr14	30107713	30107713	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	acctccattaatggtcacttCgccaaggcagttgtttggta	9	10	1	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	14	30107713	30107713	C	A	SNP	PRKD1	ENST00000331968	human	ensembl	69_37n	-1	known	nonsense	c.967	p.E323*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	216	0	0	194	43	18.07	-	-	-	A	30107713	C	A	30107713	4	1	426	1	0	0	0	0	0	1	0	0	12599	893	31	3	1823	3	PRKD1	14	30107713	Nonsense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		30107713	77241827	23	41771										
SLC8A3	0	genome.wustl.edu	37	chr14	70515731	70515731	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	caggagggcagcctctcctcCccggattcatcctcatcctc	8	18	3	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	14	70515731	70515731	C	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	silent	c.2160	p.G720	0.151	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	218	0	0	57	55	49.11	-	-	-	A	70515731	C	A	70515731	2	1	426	1	0	0	0	0	0	0	0	1	14797	610	22	4		4	SLC8A3	14	70515731	Silent	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	40408018	70515731	36833809	24	41772										
BEGAIN	0	genome.wustl.edu	37	chr14	101005271	101005273	+	In_Frame_Del	DEL	CCT	CCT	-													0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	cgggaaggccgccgcctcggCctcctcctcctcctcggccg							TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	14	101005271	101005273	CCT	-	DEL	BEGAIN	ENST00000355173	human	ensembl	69_37n	-1	known	in_frame_del	c.817_815	p.E272in_frame_del	0.781:0.856:0.982	NULL	superfamily_Prefoldin	-	no_errors	BEGAIN	HGNC	ENSG00000183092	20	0	0	4	2	33.33	-	-	-	-	101005273	CCT	-	101005271	7	5	426	1	0	1	0	1	0	0	0	0	1401	739	26	0	968	0	BEGAIN	14	101005271	In_Frame_Del	DEL	CCT	TCGA-B6-A0I2-01A-11W-A050-09	30489540	101005271	6344269	25	41773										
CASC5	0	genome.wustl.edu	37	chr15	40947129	40947129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ggtttccctttcctggacaaGcgttataggaagattgttga	11	7	0	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	15	40947129	40947129	G	C	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.6516	p.K2172N	0.033	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	106	1	0.93	60	35	36.84	-	-	-	C	40947129	G	C	40947129	3	2	426	1	0	0	0	0	1	0	0	0	2688	962	34	4	6602	4	CASC5	15	40947129	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		40947129	61584263	26	41774										
CCDC33	0	genome.wustl.edu	37	chr15	74588246	74588246	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gagcacgtccactccacgagAagcagaggaggaacctctgg	13	12	1	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	15	74588246	74588246	A	G	SNP	CCDC33	ENST00000321288	human	ensembl	69_37n	1	known	missense	c.1856	p.E619G	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CCDC33	HGNC	ENSG00000140481	275	0	0	119	28	19.05	-	-	-	G	74588246	A	G	74588246	3	3	426	1	0	0	0	0	1	0	0	0	2832	246	9	5	1289	5	CCDC33	15	74588246	Missense_Mutation	SNP	A	TCGA-B6-A0I2-01A-11W-A050-09	33641117	74588246	27943146	27	41775										
AGBL1	0	genome.wustl.edu	37	chr15	86838639	86838639	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	atgagcatctagagcagttcCgtgagtaaaatgggatcctc	11	8	1	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	15	86838639	86838639	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	nonsense	c.2236	p.R746*	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	151	0	0	60	49	44.95	-	-	-	T	86838639	C	T	86838639	4	4	426	1	0	0	0	0	0	1	0	0	375	666	23	1	2294	1	AGBL1	15	86838639	Nonsense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	12250393	86838639	15692753	28	41776										
NMRAL1	0	genome.wustl.edu	37	chr16	4511847	4511847	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	agcgtcagggccttggggttGagtctcagggtcagctcgat	16	9	3	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	16	4511847	4511847	G	C	SNP	NMRAL1	ENST00000283429	human	ensembl	69_37n	-1	known	silent	c.834	p.L278	1.000	NULL	pfam_NmrA,pfam_DH_sc/Rdtase_SDR,pfam_RCK_N	-	no_errors	NMRAL1	HGNC	ENSG00000153406	132	0	0	49	15	23.44	-	-	-	C	4511847	G	C	4511847	2	2	426	1	0	0	0	0	0	0	0	1	10573	1277	45	2		2	NMRAL1	16	4511847	Silent	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		4511847	85842906	29	41777										
FAM101B	0	genome.wustl.edu	37	chr17	293240	293240	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	cccaggggcagctgcacgtcGtcgatgaagtgcctctcgga	14	13	1	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	17	293240	293240	G	A	SNP	FAM101B	ENST00000329099	human	ensembl	69_37n	-1	known	silent	c.150	p.D50	0.896	NULL	NULL	-	no_start_codon	FAM101B	HGNC	ENSG00000183688	43	0	0	15	11	42.31	-	-	-	A	293240	G	A	293240	2	1	426	1	0	0	0	0	0	0	0	1	5421	1136	40	1		1	FAM101B	17	293240	Silent	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		293240	80901970	30	41778										
IGF2BP1	0	genome.wustl.edu	37	chr17	47117353	47117353	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ggaaggagaacgcaggtgcaGctgaaaaagccatcagtgtg	15	7	1	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	17	47117353	47117353	G	A	SNP	IGF2BP1	ENST00000290341	human	ensembl	69_37n	1	known	missense	c.718	p.A240T	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	219	0	0	86	63	42	-	-	-	A	47117353	G	A	47117353	3	1	426	1	0	0	0	0	1	0	0	0	7627	971	34	4	744	4	IGF2BP1	17	47117353	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	46824113	47117353	34077857	31	41779										
MRPS7	0	genome.wustl.edu	37	chr17	73261843	73261843	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ccatgaagtggatgatcactGagtgccgggataaaaagcac	12	8	1	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	17	73261843	73261843	G	C	SNP	MRPS7	ENST00000245539	human	ensembl	69_37n	1	known	missense	c.568	p.E190Q	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	-	no_errors	MRPS7	HGNC	ENSG00000125445	102	0	0	38	5	11.63	-	-	-	C	73261843	G	C	73261843	3	2	426	1	0	0	0	0	1	0	0	0	9920	1291	45	2	586	2	MRPS7	17	73261843	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	26144490	73261843	7933367	32	41780										
MIB1	0	genome.wustl.edu	37	chr18	19426998	19426998	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	atggtgctgacctgagcattCgaaataagaagggtcaatcg	12	7	1	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	18	19426998	19426998	C	T	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	nonsense	c.2305	p.R769*	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	77	0	0	71	38	34.55	-	-	-	T	19426998	C	T	19426998	4	4	426	1	0	0	0	0	0	1	0	0	9637	876	31	1	2367	1	MIB1	18	19426998	Nonsense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		19426998	58650250	33	41781										
DCC	0	genome.wustl.edu	37	chr18	50450136	50450136	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	catccaatgtagtagccattGaaggaaaagatgctgtcctg	10	8	0	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	18	50450136	50450136	G	T	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	nonsense	c.757	p.E253*	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	121	0	0	157	101	39.15	-	-	-	T	50450136	G	T	50450136	4	4	426	1	0	0	0	0	0	1	0	0	4313	1291	45	2	771	2	DCC	18	50450136	Nonsense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	31023138	50450136	27627112	34	41782										
CDC37	0	genome.wustl.edu	37	chr19	10514100	10514100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ccgtgtcgatgttggggtgcGtctcgtcttcatcatcagac	12	11	5	1			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	19	10514100	10514100	G	A	SNP	CDC37	ENST00000222005	human	ensembl	69_37n	-1	known	missense	c.56	p.T19M	1.000	pfam_Cdc37_N_dom	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401	158	0	0	65	19	22.62	-	-	-	A	10514100	G	A	10514100	3	1	426	1	0	0	0	0	1	0	0	0	3097	1145	40	1	1112	1	CDC37	19	10514100	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		10514100	48614883	35	41783										
RNASEH2A	0	genome.wustl.edu	37	chr19	12923995	12923995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gcacggcccagaccatcctgGagaaagaggcggaagatgtt	14	10	0	4			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	19	12923995	12923995	G	A	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	1	known	missense	c.736	p.E246K	1.000	superfamily_RNaseH-like_dom	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	452	0	0	153	29	15.93	-	-	-	A	12923995	G	A	12923995	3	1	426	1	0	0	0	0	1	0	0	0	13498	1175	41	2	762	2	RNASEH2A	19	12923995	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	2409895	12923995	46204988	36	41784										
CPAMD8	0	genome.wustl.edu	37	chr19	17039789	17039789	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gccagctgatccagaatgttCtgaattcatcccaggagagg	11	10	2	4			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	19	17039789	17039789	C	G	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.3248	p.R1083T	1.000	pfam_Methyltransf_FA	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	63	0	0	52	17	24.64	-	-	-	G	17039789	C	G	17039789	3	3	426	1	0	0	0	0	1	0	0	0	3825	913	32	2	2626	2	CPAMD8	19	17039789	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	4115794	17039789	42089194	37	41785										
DPF1	0	genome.wustl.edu	37	chr19	38708105	38708105	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ggcctgccagctcacgtttaTggttgtttttccggtggaag	13	9	1	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	19	38708105	38708105	T	G	SNP	DPF1	ENST00000355526	human	ensembl	69_37n	-1	known	missense	c.803	p.H268P	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF1	HGNC	ENSG00000011332	107	0	0	32	17	34.69	-	-	-	G	38708105	T	G	38708105	3	3	426	1	0	0	0	0	1	0	0	0	4751	1464	51	5	495	5	DPF1	19	38708105	Missense_Mutation	SNP	T	TCGA-B6-A0I2-01A-11W-A050-09	21668316	38708105	20420878	38	41786										
GMFG	0	genome.wustl.edu	37	chr19	39826138	39826138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	cctcagcttttctgttagctCtgggtctacctcgcacacca	7	15	4	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	19	39826138	39826138	C	G	SNP	GMFG	ENST00000253054	human	ensembl	69_37n	-1	known	missense	c.37	p.E13Q	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	-	no_errors	GMFG	HGNC	ENSG00000130755	228	0	0	125	41	24.55	-	-	-	G	39826138	C	G	39826138	3	3	426	1	0	0	0	0	1	0	0	0	6542	922	32	2	415	2	GMFG	19	39826138	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	1118033	39826138	19302845	39	41787										
R3HDML	0	genome.wustl.edu	37	chr20	42966018	42966018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ggattatcacaaccacatccGggccagtgtgtacccacctg	9	14	1	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	20	42966018	42966018	G	A	SNP	R3HDML	ENST00000217043	human	ensembl	69_37n	1	known	missense	c.221	p.R74Q	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074	66	0	0	22	10	30.3	-	-	-	A	42966018	G	A	42966018	3	1	426	1	0	0	0	0	1	0	0	0	12972	1116	39	1	223	1	R3HDML	20	42966018	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09		42966018	20059502	40	41788										
IFNAR1	0	genome.wustl.edu	37	chr21	34715607	34715607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	tccagaagtacatttagaagCtgaagataaggcaatagtga	10	5	0	5			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	21	34715607	34715607	C	T	SNP	IFNAR1	ENST00000270139	human	ensembl	69_37n	1	known	missense	c.410	p.A137V	1.000	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166	318	0	0	252	120	32.26	-	-	-	T	34715607	C	T	34715607	3	4	426	1	0	0	0	0	1	0	0	0	7598	797	28	4	424	4	IFNAR1	21	34715607	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		34715607	13414288	41	41789										
SLC25A18	0	genome.wustl.edu	37	chr22	18069986	18069986	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ttccacccacaggcgcccctCtgccaccctcattgcctggg	8	20	2	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	22	18069986	18069986	C	G	SNP	SLC25A18	ENST00000327451	human	ensembl	69_37n	1	known	missense	c.494	p.S165C	0.996	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902	140	0	0	39	30	43.48	-	-	-	G	18069986	C	G	18069986	3	3	426	1	0	0	0	0	1	0	0	0	14569	913	32	2	516	2	SLC25A18	22	18069986	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		18069986	33234580	42	41790										
LZTR1	0	genome.wustl.edu	37	chr22	21342406	21342406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	cggagtggaaaattgaaggaCggtgagaaactttgcagaaa	14	4	0	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	22	21342406	21342406	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	missense	c.508	p.R170W	0.814	smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	101	0	0	21	5	19.23	-	-	-	T	21342406	C	T	21342406	3	4	426	1	0	0	0	0	1	0	0	0	9204	550	19	1	526	1	LZTR1	22	21342406	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09	3272420	21342406	29962160	43	41791										
RTDR1	0	genome.wustl.edu	37	chr22	23401684	23401684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gatggcgatccgggctgcccGctgtaaggcttcggccactt	14	13	0	0			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	22	23401684	23401684	G	A	SNP	RTDR1	ENST00000216036	human	ensembl	69_37n	-1	known	missense	c.1003	p.R335W	0.004	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218	113	0	0	81	30	27.03	-	-	-	A	23401684	G	A	23401684	3	1	426	1	0	0	0	0	1	0	0	0	13805	1086	38	1	47	1	RTDR1	22	23401684	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	2059278	23401684	27902882	44	41792										
PRICKLE3	0	genome.wustl.edu	37	chrX	49032267	49032267	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gtctgaccctgatcccgcgtCacattgatagtggcgacgtc	11	13	2	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	X	49032267	49032267	C	T	SNP	PRICKLE3	ENST00000376317	human	ensembl	69_37n	-1	known	missense	c.1603	p.D535N	0.142	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	223	0	0	66	50	43.1	-	-	-	T	49032267	C	T	49032267	3	4	426	1	0	0	0	0	1	0	0	0	12569	826	29	2	248	2	PRICKLE3	23	49032267	Missense_Mutation	SNP	C	TCGA-B6-A0I2-01A-11W-A050-09		49032267	106238293	45	41793										
CACNA1F	0	genome.wustl.edu	37	chrX	49071852	49071852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	ctcctgctcgccctgggcacGgaaagtgatgatgacgaagc	13	12	0	3			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	X	49071852	49071852	G	A	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.3421	p.R1141C	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	1131	0	0	247	187	43.09	-	-	-	A	49071852	G	A	49071852	3	1	426	1	0	0	0	0	1	0	0	0	2568	1116	39	1	2596	1	CACNA1F	23	49071852	Missense_Mutation	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	39585	49071852	106198708	46	41794										
ATP11C	0	genome.wustl.edu	37	chrX	138901509	138901509	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25531914893617	12	0.0107152468341043	2.49823943661972	5.12459371614301	0.70126019273536	0.00777505983850181	0.114145658263305	7	gctcttacctgtacaaggaaGattatgagaaaataaaaatt	7	5	1	2			TCGA-B6-A0I2-01A-11W-A050-09	TCGA-B6-A0I2-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9cae7c8-a62b-46ad-a98b-82e6b5fddf00	541dbb6d-4173-4885-9387-b9607b1ed40f	X	138901509	138901509	G	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	silent	c.234	p.I78	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	93	0	0	103	31	23.13	-	-	-	A	138901509	G	A	138901509	2	1	426	1	0	0	0	0	0	0	0	1	1125	932	33	2		2	ATP11C	23	138901509	Silent	SNP	G	TCGA-B6-A0I2-01A-11W-A050-09	89829657	138901509	16369051	47	41795										
MEGF6	0	genome.wustl.edu	37	chr1	3427421	3427422	+	Frame_Shift_Ins	INS	-	-	T													0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	gtacccgccagggttgttggINStgcacacctgctggcagcac							TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	1	3427421	3427422	-	T	INS	MEGF6	ENST00000356575	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1160_1159	p.T387fs	0.975:0.990	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF_laminin,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591	11	0	0	4	2	33.33	-	-	-	T	3427422	-	T	3427421	7	5	427	1	0	1	1	0	0	0	0	0	9533	1261	44	0	3577	0	MEGF6	1	3427421	Frame_Shift_Ins	INS	-	TCGA-B6-A0I5-01A-11W-A100-09		3427421	245823200	1	41796										
FLG	0	genome.wustl.edu	37	chr1	152281273	152281273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	ggtgtccactgtctctgactGcagatgaagcttgtccatgc	11	11	1	3			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	1	152281273	152281273	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.6089	p.A2030E	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	83	0	0	260	63	19.44	-	-	-	T	152281273	G	T	152281273	3	4	427	1	0	0	0	0	1	0	0	0	5968	1319	46	4	6100	4	FLG	1	152281273	Missense_Mutation	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09	148853852	152281273	96969348	2	41797										
CRYGD	0	genome.wustl.edu	37	chr2	208988842	208988842	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	gaggatgtactcacgtggggGatgaggcggcaggagcggac	20	7	1	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	2	208988842	208988842	G	A	SNP	CRYGD	ENST00000264376	human	ensembl	69_37n	-1	known	silent	c.246	p.I82	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231	19	0	0	16	13	44.83	-	-	-	A	208988842	G	A	208988842	2	1	427	1	0	0	0	0	0	0	0	1	3947	1164	41	2		2	CRYGD	2	208988842	Silent	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09		208988842	34210531	3	41798										
SFMBT1	0	genome.wustl.edu	37	chr3	52954632	52954632	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	aatatatccatggattccacActcacaatacattcaggtat	4	10	2	0			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	3	52954632	52954632	A	C	SNP	SFMBT1	ENST00000358080	human	ensembl	69_37n	-1	known	missense	c.1293	p.S431R	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	134	1	0.74	94	43	31.39	-	-	-	C	52954632	A	C	52954632	3	2	427	1	0	0	0	0	1	0	0	0	14245	156	6	5	1347	5	SFMBT1	3	52954632	Missense_Mutation	SNP	A	TCGA-B6-A0I5-01A-11W-A100-09		52954632	145067798	4	41799										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	78	38	32.76	-	-	-	G	178936095	A	G	178936095	3	3	427	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-B6-A0I5-01A-11W-A100-09	125981463	178936095	19086335	5	41800										
ZNF454	0	genome.wustl.edu	37	chr5	178392823	178392823	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	accttacaaatgtaaaatctGtgagaaagcctttatccgaa	6	8	1	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	5	178392823	178392823	G	C	SNP	ZNF454	ENST00000320129	human	ensembl	69_37n	1	known	missense	c.1418	p.C473S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187	134	0	0	99	35	26.12	-	-	-	C	178392823	G	C	178392823	3	2	427	1	0	0	0	0	1	0	0	0	18019	1377	48	4	1432	4	ZNF454	5	178392823	Missense_Mutation	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09		178392823	2522437	6	41801										
CYP21A2	0	genome.wustl.edu	37	chr6	32006244	32006244	+	Frame_Shift_Del	DEL	C	C	-													0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	ctgctgcccctgctggctggCgcccgcctgctgtggaactg							TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	6	32006244	32006244	C	-	DEL	CYP21A2	ENST00000418967	human	ensembl	69_37n	1	known	frame_shift_del	c.45	p.A16fs	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852	12	0	0	3	4	50	-	-	-	-	32006244	C	-	32006244	7	5	427	1	0	1	0	1	0	0	0	0	4184	755	27	0	1568	0	CYP21A2	6	32006244	Frame_Shift_Del	DEL	C	TCGA-B6-A0I5-01A-11W-A100-09		32006244	139108823	7	41802										
PDAP1	0	genome.wustl.edu	37	chr7	98997926	98997926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	ggcccagccagtgatgttacCgttctctcctcgaaagctcc	9	15	1	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	7	98997926	98997926	C	T	SNP	PDAP1	ENST00000350498	human	ensembl	69_37n	-1	known	missense	c.335	p.R112Q	1.000	pfam_Casein_kinase_sb_PP28	pfam_Casein_kinase_sb_PP28	-	no_errors	PDAP1	HGNC	ENSG00000106244	417	1	0.24	197	167	45.88	-	-	-	T	98997926	C	T	98997926	3	4	427	1	0	0	0	0	1	0	0	0	11686	666	23	1	222	1	PDAP1	7	98997926	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09		98997926	60140737	8	41803										
CSMD1	0	genome.wustl.edu	37	chr8	2823394	2823394	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	acatagcctgggttacactgAtagctcacagtcttgttgaa	9	9	2	2			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	8	2823394	2823394	A	G	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.7435	p.S2479P	0.925	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	120	0	0	220	50	18.52	-	-	-	G	2823394	A	G	2823394	3	3	427	1	0	0	0	0	1	0	0	0	3976	340	12	5	1559	5	CSMD1	8	2823394	Missense_Mutation	SNP	A	TCGA-B6-A0I5-01A-11W-A100-09		2823394	143540628	9	41804										
PKHD1L1	0	genome.wustl.edu	37	chr8	110442249	110442249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	cattactcccctagtcttggCgataagcccttctcaaggta	7	13	2	0			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	8	110442249	110442249	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.3212	p.A1071V	0.003	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	138	0	0	196	248	55.73	-	-	-	T	110442249	C	T	110442249	3	4	427	1	0	0	0	0	1	0	0	0	12046	768	27	1	3318	1	PKHD1L1	8	110442249	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09	107618855	110442249	35921773	10	41805										
GATA3	0	genome.wustl.edu	37	chr10	8115701	8115704	+	Frame_Shift_Del	DEL	GATT	GATT	-													0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	aaaaaattgatctttgtttaGattaacagacccctgactat							TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	GATT	GATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	10	8115701	8115704	GATT	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1052_1053	p.N351fs	1.000:1.000:1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	48	0	0	36	7	16.28	-	-	-	-	8115704	GATT	-	8115701	7	5	427	1	0	1	0	1	0	0	0	0	6305	956	33	0	1068	0	GATA3	10	8115701	Frame_Shift_Del	DEL	GATT	TCGA-B6-A0I5-01A-11W-A100-09		8115701	127419046	11	41806										
MPP7	0	genome.wustl.edu	37	chr10	28436429	28436429	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	caccttcacattgggttttgAcagtagtttcaacagctctc	7	11	3	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	10	28436429	28436429	A	G	SNP	MPP7	ENST00000337532	human	ensembl	69_37n	-1	known	missense	c.298	p.S100P	1.000	pfam_L27_C,smart_L27,pfscan_L27	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP7	HGNC	ENSG00000150054	344	0	0	374	169	31.07	-	-	-	G	28436429	A	G	28436429	3	3	427	1	0	0	0	0	1	0	0	0	9811	275	10	5	1484	5	MPP7	10	28436429	Missense_Mutation	SNP	A	TCGA-B6-A0I5-01A-11W-A100-09	20320728	28436429	107098318	12	41807										
ABCC8	0	genome.wustl.edu	37	chr11	17434293	17434293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	accaccagacaggttgatgcCctgtcaccaaagaggaggaa	11	11	1	3			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	11	17434293	17434293	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.2479	p.G827S	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	164	0	0	140	78	35.62	-	-	-	T	17434293	C	T	17434293	3	4	427	1	0	0	0	0	1	0	0	0	58	637	22	4	2345	4	ABCC8	11	17434293	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09		17434293	117572223	13	41808										
FADS2	0	genome.wustl.edu	37	chr11	61607902	61607902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	tcttcctcctcctcctggccCacatcatcgccctggagagc	7	19	2	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	11	61607902	61607902	C	T	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.415	p.H139Y	1.000	pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	112	0	0	84	19	18.45	-	-	-	T	61607902	C	T	61607902	3	4	427	1	0	0	0	0	1	0	0	0	5406	594	21	4	425	4	FADS2	11	61607902	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09	44173609	61607902	73398614	14	41809										
ABCD2	0	genome.wustl.edu	37	chr12	39947886	39947886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	cagtatccaattgttcaaagCgccaacctccttcaccatca	4	15	3	0			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	12	39947886	39947886	C	T	SNP	ABCD2	ENST00000308666	human	ensembl	69_37n	-1	known	missense	c.2051	p.R684H	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD2	HGNC	ENSG00000173208	177	0	0	183	69	27.38	-	-	-	T	39947886	C	T	39947886	3	4	427	1	0	0	0	0	1	0	0	0	61	768	27	1	175	1	ABCD2	12	39947886	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09		39947886	93904009	15	41810										
PKD1L2	0	genome.wustl.edu	37	chr16	81193367	81193367	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	gggaccacagtcaaatagtaGaccccttctccaaaacgcag	8	13	2	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	16	81193367	81193367	G	T	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	silent	c.3756	p.V1252	0.025	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	113	0	0	200	44	18.03	-	-	-	T	81193367	G	T	81193367	2	4	427	1	0	0	0	0	0	0	0	1	12039	929	33	2		2	PKD1L2	16	81193367	Silent	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09		81193367	9161386	16	41811										
CNP	0	genome.wustl.edu	37	chr17	40123967	40123967	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	ggtcacctactttggaaagaGacccccaggcgtgctgcatt	11	12	1	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	17	40123967	40123967	G	A	SNP	CNP	ENST00000393892	human	ensembl	69_37n	1	known	missense	c.734	p.R245K	1.000	pfam_CNPase,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786	72	0	0	33	18	35.29	-	-	-	A	40123967	G	A	40123967	3	1	427	1	0	0	0	0	1	0	0	0	3656	942	33	2	744	2	CNP	17	40123967	Missense_Mutation	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09		40123967	41071243	17	41812										
L3MBTL4	0	genome.wustl.edu	37	chr18	6171939	6171939	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	tggtcccaaccatcaaaatgAacctgttaaaacgagttttg	7	9	1	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	18	6171939	6171939	A	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	silent	c.984	p.V328	0.998	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	237	0	0	322	159	33.06	-	-	-	G	6171939	A	G	6171939	2	3	427	1	0	0	0	0	0	0	0	1	8648	233	9	5		5	L3MBTL4	18	6171939	Silent	SNP	A	TCGA-B6-A0I5-01A-11W-A100-09		6171939	71905309	18	41813										
KIAA1755	0	genome.wustl.edu	37	chr20	36856567	36856567	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	acctgggtggcctgcagggcGctgaccagaccgggctgtgg	18	12	0	2			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	20	36856567	36856567	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.1947	p.S649	0.761	superfamily_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	87	0	0	49	34	40.96	-	-	-	A	36856567	G	A	36856567	2	1	427	1	0	0	0	0	0	0	0	1	8309	1078	38	1		1	KIAA1755	20	36856567	Silent	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09		36856567	26168953	19	41814										
BCOR	0	genome.wustl.edu	37	chrX	39923606	39923606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	cacctttagagactcgtcggCgtttggctttcagcagaggg	13	10	1	2			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	X	39923606	39923606	C	T	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3485	p.R1162H	0.934	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	39	0	0	36	8	17.78	-	-	-	T	39923606	C	T	39923606	3	4	427	1	0	0	0	0	1	0	0	0	1390	768	27	1	1818	1	BCOR	23	39923606	Missense_Mutation	SNP	C	TCGA-B6-A0I5-01A-11W-A100-09		39923606	115346954	20	41815										
ZMYM3	0	genome.wustl.edu	37	chrX	70464311	70464311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.994628167771038	0.646655231560892	0	0.711320754716981	1	1	0	gctttcggaaagcaccagccGcttttgaccctggaggggaa	13	11	0	1			TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	X	70464311	70464311	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.3127	p.R1043W	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	173	0	0	129	51	28.18	-	-	-	A	70464311	G	A	70464311	3	1	427	1	0	0	0	0	1	0	0	0	17797	1086	38	1	1015	1	ZMYM3	23	70464311	Missense_Mutation	SNP	G	TCGA-B6-A0I5-01A-11W-A100-09	30540705	70464311	84806249	21	41816										
H6PD	0	genome.wustl.edu	37	chr1	9305183	9305183	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtcacagttttagcttccatGgagctgctctgacagccccc	9	14	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	9305183	9305183	G	T	SNP	H6PD	ENST00000377403	human	ensembl	69_37n	1	known	nonsense	c.190	p.G64*	1.000	pfam_G6P_DH_NAD-bd	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239	106	0	0	19	34	64.15	-	-	-	T	9305183	G	T	9305183	4	4	428	1	0	0	0	0	0	1	0	0	6987	1349	47	4	192	4	H6PD	1	9305183	Nonsense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		9305183	239945438	1	41817										
ATP13A2	0	genome.wustl.edu	37	chr1	17320173	17320173	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ccatggggtcgcccacggggGtgtcctggagccggctgagg	19	12	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	17320173	17320173	G	C	SNP	ATP13A2	ENST00000326735	human	ensembl	69_37n	-1	known	missense	c.1700	p.T567S	0.934	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A2	HGNC	ENSG00000159363	27	0	0	16	5	23.81	-	-	-	C	17320173	G	C	17320173	3	2	428	1	0	0	0	0	1	0	0	0	1128	1261	44	4	2134	4	ATP13A2	1	17320173	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	8014990	17320173	231930448	2	41818										
RLF	0	genome.wustl.edu	37	chr1	40702980	40702980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	taaatcacatttacctgaagAtcttttctgtgcagaatcag	6	8	4	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	40702980	40702980	A	G	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.2606	p.D869G	0.672	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	70	0	0	67	35	34.31	-	-	-	G	40702980	A	G	40702980	3	3	428	1	0	0	0	0	1	0	0	0	13475	333	12	5	2636	5	RLF	1	40702980	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	23382807	40702980	208547641	3	41819										
EDN2	0	genome.wustl.edu	37	chr1	41948218	41948218	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gccttggcagggagcggcgcCggcgtcttggcgggtttccc	18	13	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	41948218	41948218	C	G	SNP	EDN2	ENST00000372587	human	ensembl	69_37n	-1	known	missense	c.263	p.R88P	1.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN2	HGNC	ENSG00000127129	13	0	0	11	6	35.29	-	-	-	G	41948218	C	G	41948218	3	3	428	1	0	0	0	0	1	0	0	0	4952	652	23	3	285	3	EDN2	1	41948218	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	1245238	41948218	207302403	4	41820										
AMY2B	0	genome.wustl.edu	37	chr1	104112489	104112489	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aggagcacctggtgctgctgAccgaggaccccctgaacctc	12	15	0	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	104112489	104112489	A	T	SNP	AMY2B	ENST00000491397	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038	43	0	0	31	23	42.59	-	-	-	T	104112489	A	T	104112489	1	4	428	0	1	0	0	0	0	0	0	0	595	290	10	5		5	AMY2B	1	104112489	RNA	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	62164271	104112489	145138132	5	41821										
SARS	0	genome.wustl.edu	37	chr1	109773582	109773582	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tgtggacctggtggtgatggTagatggctttgaaggcgaaa	17	4	0	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	109773582	109773582	T	G	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	missense	c.530	p.V177G	1.000	pirsf_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	283	2	0.7	235	146	38.32	-	-	-	G	109773582	T	G	109773582	3	3	428	1	0	0	0	0	1	0	0	0	13931	1638	57	5	548	5	SARS	1	109773582	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	5661093	109773582	139477039	6	41822										
HMGCS2	0	genome.wustl.edu	37	chr1	120311433	120311433	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gcaccgctcttgtcagttgcAgaatgcgcttcactggagtc	11	12	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	120311433	120311433	A	G	SNP	HMGCS2	ENST00000369406	human	ensembl	69_37n	-1	known	missense	c.35	p.L12P	0.015	NULL	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240	201	0	0	45	45	50	-	-	-	G	120311433	A	G	120311433	3	3	428	1	0	0	0	0	1	0	0	0	7284	188	7	5	1527	5	HMGCS2	1	120311433	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	10537851	120311433	128939188	7	41823										
TARS2	0	genome.wustl.edu	37	chr1	150471489	150471489	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ggcttcctgggggacccttgCctttgggaccaggccgaaca	14	13	0	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	150471489	150471489	C	T	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	silent	c.1518	p.C506	0.005	pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	133	0	0	133	93	40.97	-	-	-	T	150471489	C	T	150471489	2	4	428	1	0	0	0	0	0	0	0	1	15652	747	26	4		4	TARS2	1	150471489	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	30160056	150471489	98779132	8	41824										
S100A7L2	0	genome.wustl.edu	37	chr1	153409544	153409544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tagggtgggatcactggcttCccccggaacagggtgccact	14	12	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	153409544	153409544	C	T	SNP	S100A7L2	ENST00000453814	human	ensembl	69_37n	-1	known	missense	c.329	p.G110E	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	S100A7L2	HGNC	ENSG00000197364	280	1	0.36	217	25	10.33	-	-	-	T	153409544	C	T	153409544	3	4	428	1	0	0	0	0	1	0	0	0	13871	855	30	2	13	2	S100A7L2	1	153409544	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	2938055	153409544	95841077	9	41825										
UBAP2L	0	genome.wustl.edu	37	chr1	154232354	154232354	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cattcttctgttttttcctcCgtggaaatagtactcatgct	6	10	3	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	154232354	154232354	C	G	SNP	UBAP2L	ENST00000475373	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UBAP2L	HGNC	ENSG00000143569	100	0	0	114	66	36.67	-	-	-	G	154232354	C	G	154232354	1	3	428	0	1	0	0	0	0	0	0	0	16935	667	23	3		3	UBAP2L	1	154232354	RNA	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	822810	154232354	95018267	10	41826										
ITLN1	0	genome.wustl.edu	37	chr1	160851091	160851091	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tccttggcctggatgtcgtaGtagccagggttctggaaagc	14	9	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	160851091	160851091	G	A	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	silent	c.417	p.Y139	1.000	superfamily_Fibrinogen_a/b/g_C	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	176	0	0	103	37	26.24	-	-	-	A	160851091	G	A	160851091	2	1	428	1	0	0	0	0	0	0	0	1	7964	1024	36	4		4	ITLN1	1	160851091	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	6618737	160851091	88399530	11	41827										
RXRG	0	genome.wustl.edu	37	chr1	165370566	165370566	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tcaatgggggtgtccccgatGagcttgaagaagaagaggtg	16	6	1	5			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	165370566	165370566	G	A	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.1326	p.L442	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	140	0	0	32	28	46.67	-	-	-	A	165370566	G	A	165370566	2	1	428	1	0	0	0	0	0	0	0	1	13851	1277	45	2		2	RXRG	1	165370566	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	4519475	165370566	83880055	12	41828										
HMCN1	0	genome.wustl.edu	37	chr1	186057340	186057340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gacgatcagcaatcctgtgaCattaacatgtgatgccactg	9	10	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	186057340	186057340	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9509	p.T3170I	0.889	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	142	0	0	82	40	32.79	-	-	-	T	186057340	C	T	186057340	3	4	428	1	0	0	0	0	1	0	0	0	7271	478	17	4	9755	4	HMCN1	1	186057340	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	20686774	186057340	63193281	13	41829										
KIF21B	0	genome.wustl.edu	37	chr1	200957999	200957999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ggaggagcctgccatatccgTctgcctcagtcggccctcca	11	16	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	200957999	200957999	T	A	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.3193	p.T1065S	1.000	superfamily_Prefoldin	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	38	0	0	12	8	40	-	-	-	A	200957999	T	A	200957999	3	1	428	1	0	0	0	0	1	0	0	0	8341	1667	58	5	1733	5	KIF21B	1	200957999	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	14900659	200957999	48292622	14	41830										
ARID4B	0	genome.wustl.edu	37	chr1	235392550	235392550	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aactgttttcacttacttctTcttcactgctattatcctcc	2	13	4	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	1	235392550	235392550	T	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.893	p.E298G	1.000	superfamily_ARID/BRIGHT_DNA-bd	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	194	0	0	307	104	25.3	-	-	-	C	235392550	T	C	235392550	3	2	428	1	0	0	0	0	1	0	0	0	922	1783	62	5	3101	5	ARID4B	1	235392550	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	34434551	235392550	13858071	15	41831										
VIT	0	genome.wustl.edu	37	chr2	36994266	36994266	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	caaaagcctatcagaggccaCctattccagggacaactgca	8	13	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	36994266	36994266	C	A	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	missense	c.517	p.P173T	0.003	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	205	0	0	82	38	31.67	-	-	-	A	36994266	C	A	36994266	3	1	428	1	0	0	0	0	1	0	0	0	17268	507	18	4	664	4	VIT	2	36994266	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		36994266	206205107	16	41832										
THADA	0	genome.wustl.edu	37	chr2	43793935	43793935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gaaacaatgcttcaaaaagaCtgttacaaatggatgacatg	8	6	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	43793935	43793935	C	T	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.2213	p.S738N	0.708	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	103	0	0	93	60	39.22	-	-	-	T	43793935	C	T	43793935	3	4	428	1	0	0	0	0	1	0	0	0	15935	565	20	4	3744	4	THADA	2	43793935	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	6799669	43793935	199405438	17	41833										
LYG2	0	genome.wustl.edu	37	chr2	99860525	99860525	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gattgccttaattctctctgTtagaatcccagtagcctgtg	8	10	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	99860525	99860525	T	A	SNP	LYG2	ENST00000333017	human	ensembl	69_37n	-1	known	missense	c.457	p.T153S	0.067	pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23	pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674	348	0	0	142	112	44.09	-	-	-	A	99860525	T	A	99860525	3	1	428	1	0	0	0	0	1	0	0	0	9172	1725	60	5	189	5	LYG2	2	99860525	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	56066590	99860525	143338848	18	41834										
ZEB2	0	genome.wustl.edu	37	chr2	145187357	145187357	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tggaccatctacagaggcttGtagaatctcgttgttgtgcc	11	9	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	145187357	145187357	G	T	SNP	ZEB2	ENST00000419938	human	ensembl	69_37n	-1	putative	nonsense	c.237	p.Y79*	1.000	NULL	pfam_Znf_C2H2,pfam_Di19_RING_finger_144,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZEB2	HGNC	ENSG00000169554	169	1	0.59	47	21	30.88	-	-	-	T	145187357	G	T	145187357	4	4	428	1	0	0	0	0	0	1	0	0	17720	1386	48	4	3366	4	ZEB2	2	145187357	Nonsense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	45326832	145187357	98012016	19	41835										
XIRP2	0	genome.wustl.edu	37	chr2	168106560	168106560	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aaagctgaacataaaaaattGccccagccatataatagtct	5	9	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	168106560	168106560	G	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.8658	p.L2886F	0.015	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	112	0	0	23	13	36.11	-	-	-	C	168106560	G	C	168106560	3	2	428	1	0	0	0	0	1	0	0	0	17527	1310	46	4	8688	4	XIRP2	2	168106560	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	22919203	168106560	75092813	20	41836										
TTN	0	genome.wustl.edu	37	chr2	179583919	179583919	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtcaggactgctgagcactcAtcggaaccagctacattggc	11	12	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	179583919	179583919	A	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20466	p.D6822E	0.011	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	62	0	0	17	27	61.36	-	-	-	T	179583919	A	T	179583919	3	4	428	1	0	0	0	0	1	0	0	0	16832	214	8	5	80451	5	TTN	2	179583919	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	11477359	179583919	63615454	21	41837										
HECW2	0	genome.wustl.edu	37	chr2	197092973	197092973	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctctagaaggcccactgtaaTccagcctgtaacaaaaatcc	6	13	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	197092973	197092973	T	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.3770	p.D1257G	1.000	smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	194	0	0	189	24	11.21	-	-	-	C	197092973	T	C	197092973	3	2	428	1	0	0	0	0	1	0	0	0	7094	1435	50	5	980	5	HECW2	2	197092973	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	17509054	197092973	46106400	22	41838										
CDK15	0	genome.wustl.edu	37	chr2	202744849	202744849	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ggaagcacttgttcatgattAtttcagcgccctgccatctc	8	12	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	202744849	202744849	A	T	SNP	CDK15	ENST00000374598	human	ensembl	69_37n	1	known	missense	c.1157	p.Y386F	0.979	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK15	HGNC	ENSG00000138395	73	0	0	35	123	77.85	-	-	-	T	202744849	A	T	202744849	3	4	428	1	0	0	0	0	1	0	0	0	3160	449	16	5	1046	5	CDK15	2	202744849	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	5651876	202744849	40454524	23	41839										
GLB1L	0	genome.wustl.edu	37	chr2	220101969	220101969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	atgtaattttgttgagggctCccctaggaaacagcaggaat	11	7	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	220101969	220101969	C	T	SNP	GLB1L	ENST00000295759	human	ensembl	69_37n	-1	known	missense	c.1790	p.G597E	0.004	superfamily_Galactose-bd-like	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L	HGNC	ENSG00000163521	218	0	0	59	160	73.06	-	-	-	T	220101969	C	T	220101969	3	4	428	1	0	0	0	0	1	0	0	0	6480	855	30	2	178	2	GLB1L	2	220101969	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	17357120	220101969	23097404	24	41840										
HDAC4	0	genome.wustl.edu	37	chr2	240033318	240033318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ccgggacagaggcctgtggcCgccgaaggacacggggatgc	18	12	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	2	240033318	240033318	C	A	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	missense	c.1867	p.G623C	0.827	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	11	0	0	1	4	80	-	-	-	A	240033318	C	A	240033318	3	1	428	1	0	0	0	0	1	0	0	0	7060	652	23	3	1443	3	HDAC4	2	240033318	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	19931349	240033318	3166055	25	41841										
PDZRN3	0	genome.wustl.edu	37	chr3	73657824	73657824	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aggacaagagtcagacttttGgtttcttcgccctgcaggta	11	9	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	3	73657824	73657824	G	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	silent	c.735	p.T245	0.999	superfamily_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	102	0	0	35	45	56.25	-	-	-	T	73657824	G	T	73657824	2	4	428	1	0	0	0	0	0	0	0	1	11782	1335	47	4		4	PDZRN3	3	73657824	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		73657824	124364606	26	41842										
CADM2	0	genome.wustl.edu	37	chr3	86010743	86010743	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ataatggtacatatcgatgtGaagccacaaacaccattggc	8	9	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	3	86010743	86010743	G	A	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.895	p.E299K	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	128	1	0.78	113	31	21.53	-	-	-	A	86010743	G	A	86010743	3	1	428	1	0	0	0	0	1	0	0	0	2592	1291	45	2	986	2	CADM2	3	86010743	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	12352919	86010743	112011687	27	41843										
COL6A5	0	genome.wustl.edu	37	chr3	130142716	130142716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gaaaggtgaagagggatctcGaggactcccaggccctcctg	14	11	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	3	130142716	130142716	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.5135	p.R1712Q	0.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	160	0	0	72	37	33.94	-	-	-	A	130142716	G	A	130142716	3	1	428	1	0	0	0	0	1	0	0	0	3732	1058	37	1	5245	1	COL6A5	3	130142716	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	44131973	130142716	67879714	28	41844										
LRRC34	0	genome.wustl.edu	37	chr3	169514046	169514046	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtaagagtttcactgagataGtttgcgcctgcattttctat	9	7	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	3	169514046	169514046	G	C	SNP	LRRC34	ENST00000446859	human	ensembl	69_37n	-1	known	missense	c.1020	p.N340K	0.007	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757	285	1	0.35	194	149	43.44	-	-	-	C	169514046	G	C	169514046	3	2	428	1	0	0	0	0	1	0	0	0	9055	1020	36	4	408	4	LRRC34	3	169514046	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	39371330	169514046	28508384	29	41845										
OPA1	0	genome.wustl.edu	37	chr3	193361877	193361877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tagacctggcagagaaaaatGtagccagtccaagcagggtg	13	8	0	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	3	193361877	193361877	G	T	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	missense	c.1591	p.V531L	1.000	smart_Dynamin_GTPase	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	213	0	0	153	27	15	-	-	-	T	193361877	G	T	193361877	3	4	428	1	0	0	0	0	1	0	0	0	10944	1377	48	4	1653	4	OPA1	3	193361877	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	23847831	193361877	4660553	30	41846										
ZNF595	0	genome.wustl.edu	37	chr4	87098	87098	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aaaccctacaaatgcaaagaAtgtggcaaagcctataactt	6	9	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	87098	87098	A	C	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.159	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	47	0	0	19	36	65.45	-	-	-	C	87098	A	C	87098	1	2	428	0	1	0	0	0	0	0	0	0	18121	101	4	5		5	ZNF595	4	87098	RNA	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09		87098	191067178	31	41847										
ZNF595	0	genome.wustl.edu	37	chr4	87135	87135	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	acttatcctcaacccttactAaacataagagaattcatact	2	11	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	87135	87135	A	T	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.196	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	37	0	0	11	35	76.09	-	-	-	T	87135	A	T	87135	1	4	428	0	1	0	0	0	0	0	0	0	18121	349	13	5		5	ZNF595	4	87135	RNA	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	37	87135	191067141	32	41848										
WHSC1	0	genome.wustl.edu	37	chr4	1941401	1941401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	caacgaaaaatctgtctgatGcatgtaaaccactgaagaag	8	8	2	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	1941401	1941401	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	missense	c.1777	p.A593T	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_superfamily,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_PWWP,smart_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_superfamily	-	no_errors	WHSC1	HGNC	ENSG00000109685	98	0	0	53	62	53.91	-	-	-	A	1941401	G	A	1941401	3	1	428	1	0	0	0	0	1	0	0	0	17459	1319	46	4	1807	4	WHSC1	4	1941401	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	1854266	1941401	189212875	33	41849										
ATP10D	0	genome.wustl.edu	37	chr4	47593232	47593232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ccaatcagctggcaagtcagGaagaagacccatgcctggcc	11	13	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	47593232	47593232	G	A	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.4115	p.G1372E	0.002	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	154	0	0	77	30	28.04	-	-	-	A	47593232	G	A	47593232	3	1	428	1	0	0	0	0	1	0	0	0	1122	1174	41	2	4201	2	ATP10D	4	47593232	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	45651831	47593232	143561044	34	41850										
ANK2	0	genome.wustl.edu	37	chr4	114274877	114274877	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aaaccaagcttgggaataaaGaagccagtaagaaggaaatt	10	5	0	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	114274877	114274877	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.5103	p.K1701	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	146	1	0.68	68	16	19.05	-	-	-	A	114274877	G	A	114274877	2	1	428	1	0	0	0	0	0	0	0	1	621	933	33	2		2	ANK2	4	114274877	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	66681645	114274877	76879399	35	41851										
DCHS2	0	genome.wustl.edu	37	chr4	155225823	155225823	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	acaaacaaacaaacttaccaAttatgtgatattcaacagct	3	9	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	4	155225823	155225823	A	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.4238	p.I1413N	0.702	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	145	0	0	18	28	60.87	-	-	-	T	155225823	A	T	155225823	3	4	428	1	0	0	0	0	1	0	0	0	4319	101	4	5	4548	5	DCHS2	4	155225823	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	40950946	155225823	35928453	36	41852										
OSMR	0	genome.wustl.edu	37	chr5	38884114	38884114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	taactgcattcaacttgaatAgtgtgcctttcattaggaat	7	7	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	5	38884114	38884114	A	G	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	missense	c.604	p.S202G	0.002	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	202	0	0	110	59	34.91	-	-	-	G	38884114	A	G	38884114	3	3	428	1	0	0	0	0	1	0	0	0	11365	420	15	5	618	5	OSMR	5	38884114	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09		38884114	142031146	37	41853										
FAM53C	0	genome.wustl.edu	37	chr5	137681244	137681244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	actggggtcaagcggcgccaCgaggaagacccccggcgtct	15	14	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	5	137681244	137681244	C	T	SNP	FAM53C	ENST00000513056	human	ensembl	69_37n	1	putative	missense	c.296	p.T99M	0.453	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	32	0	0	14	7	33.33	-	-	-	T	137681244	C	T	137681244	3	4	428	1	0	0	0	0	1	0	0	0	5627	535	19	1	877	1	FAM53C	5	137681244	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	98797130	137681244	43234016	38	41854										
DST	0	genome.wustl.edu	37	chr6	56484032	56484032	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	atagtttgtttctctaaaacTatattctctgattctgcctg	5	8	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	6	56484032	56484032	T	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	silent	c.4800	p.I1600	0.000	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	192	0	0	191	106	35.69	-	-	-	A	56484032	T	A	56484032	2	1	428	1	0	0	0	0	0	0	0	1	4818	1512	53	5		5	DST	6	56484032	Silent	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09		56484032	114631035	39	41855										
FBXL4	0	genome.wustl.edu	37	chr6	99365418	99365418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ttgagagaaagcactggcttGtccttcacaccatgtagcac	9	11	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	6	99365418	99365418	G	T	SNP	FBXL4	ENST00000229971	human	ensembl	69_37n	-1	known	missense	c.690	p.D230E	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL4	HGNC	ENSG00000112234	198	1	0.5	94	21	18.26	-	-	-	T	99365418	G	T	99365418	3	4	428	1	0	0	0	0	1	0	0	0	5767	1368	48	4	1199	4	FBXL4	6	99365418	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	42881386	99365418	71749649	40	41856										
PREP	0	genome.wustl.edu	37	chr6	105729625	105729625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtcaataaaaccttacttgaCaagccattcaaagtgttgtt	6	8	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	6	105729625	105729625	C	A	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	missense	c.1834	p.V612F	0.820	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	131	0	0	82	19	18.81	-	-	-	A	105729625	C	A	105729625	3	1	428	1	0	0	0	0	1	0	0	0	12555	478	17	4	306	4	PREP	6	105729625	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	6364207	105729625	65385442	41	41857										
DSE	0	genome.wustl.edu	37	chr6	116757125	116757125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aagagctgcttttctccctgGgtgggtcaggtcacagaaga	13	9	3	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	6	116757125	116757125	G	T	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.1551	p.W517C	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	35	0	0	15	37	71.15	-	-	-	T	116757125	G	T	116757125	3	4	428	1	0	0	0	0	1	0	0	0	4809	1241	43	4	1512	4	DSE	6	116757125	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	11027500	116757125	54357942	42	41858										
MTRF1L	0	genome.wustl.edu	37	chr6	153310937	153310937	+	RNA	DEL	A	A	-													0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	acctccaactgtgttaactcAacgtttttcaagagagtaag							TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	6	153310937	153310937	A	-	DEL	MTRF1L	ENST00000461949	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.168	-	-	-	no_errors	MTRF1L	HGNC	ENSG00000112031	17	0	0	7	6	42.86	-	-	-	-	153310937	A	-	153310937	6	5	428	0	1	1	0	1	0	0	0	0	10032	145	5	0		0	MTRF1L	6	153310937	RNA	DEL	A	TCGA-B6-A0I6-01A-11D-A128-09	36553812	153310937	17804130	43	41859										
FGL2	0	genome.wustl.edu	37	chr7	76825866	76825866	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtgaaaaacttcagatcgtgGttgtaatgtttgttgaaacg	11	4	1	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	7	76825866	76825866	G	T	SNP	FGL2	ENST00000248598	human	ensembl	69_37n	-1	known	missense	c.1050	p.N350K	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGL2	HGNC	ENSG00000127951	164	0	0	139	102	42.32	-	-	-	T	76825866	G	T	76825866	3	4	428	1	0	0	0	0	1	0	0	0	5919	1252	44	4	273	4	FGL2	7	76825866	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		76825866	82312797	44	41860										
PEX1	0	genome.wustl.edu	37	chr7	92131275	92131275	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ccacaagtactgtaaaatctCtagccacaaacccgccagtt	5	14	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	7	92131275	92131275	C	T	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.2345	p.R782K	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	283	1	0.35	136	61	30.81	-	-	-	T	92131275	C	T	92131275	3	4	428	1	0	0	0	0	1	0	0	0	11809	913	32	2	1550	2	PEX1	7	92131275	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	15305409	92131275	67007388	45	41861										
SLC12A9	0	genome.wustl.edu	37	chr7	100456721	100456721	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cctctgggcacgatcgtcgcCgtcgcctacaccttcttcgt	9	17	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	7	100456721	100456721	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	1	known	silent	c.915	p.A305	0.138	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	261	0	0	140	96	40.68	-	-	-	T	100456721	C	T	100456721	2	4	428	1	0	0	0	0	0	0	0	1	14479	639	23	1		1	SLC12A9	7	100456721	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	8325446	100456721	58681942	46	41862										
BMP1	0	genome.wustl.edu	37	chr8	22037949	22037949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aataccccaatggctactctGctcacatgcactgcgtgtgg	9	13	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	8	22037949	22037949	G	A	SNP	BMP1	ENST00000306385	human	ensembl	69_37n	1	known	missense	c.1030	p.A344T	0.976	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	106	0	0	41	54	55.67	-	-	-	A	22037949	G	A	22037949	3	1	428	1	0	0	0	0	1	0	0	0	1461	1319	46	4	1060	4	BMP1	8	22037949	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		22037949	124326073	47	41863										
TEX15	0	genome.wustl.edu	37	chr8	30704902	30704902	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gctgacactgcattatcttcTctgcaaatcaagttaaattt	5	9	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	8	30704902	30704902	T	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1632	p.R544S	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	43	0	0	100	61	37.89	-	-	-	G	30704902	T	G	30704902	3	3	428	1	0	0	0	0	1	0	0	0	15874	1548	54	5	6753	5	TEX15	8	30704902	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	8666953	30704902	115659120	48	41864										
PRKDC	0	genome.wustl.edu	37	chr8	48792059	48792059	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	actagaaactaacctttttcAtgcagtccacataattattg	4	9	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	8	48792059	48792059	A	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.5225	p.M1742K	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	105	0	0	54	45	45.45	-	-	-	T	48792059	A	T	48792059	3	4	428	1	0	0	0	0	1	0	0	0	12602	217	8	5	7350	5	PRKDC	8	48792059	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	18087157	48792059	97571963	49	41865										
MATN2	0	genome.wustl.edu	37	chr8	98943194	98943194	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tccccagagagttcctgtgaGaacaagcgggcagacctggt	13	11	0	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	8	98943194	98943194	G	T	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.156	p.E52D	0.981	NULL	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	70	0	0	85	23	21.3	-	-	-	T	98943194	G	T	98943194	3	4	428	1	0	0	0	0	1	0	0	0	9405	933	33	2	162	2	MATN2	8	98943194	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	50151135	98943194	47420828	50	41866										
COL22A1	0	genome.wustl.edu	37	chr8	139606389	139606389	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tgggggcccaggtctgccttGagatgacttcatgtacgccg	14	11	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	8	139606389	139606389	G	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.4486	p.Q1496K	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	45	0	0	44	12	21.43	-	-	-	T	139606389	G	T	139606389	3	4	428	1	0	0	0	0	1	0	0	0	3711	1299	45	2	406	2	COL22A1	8	139606389	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	40663195	139606389	6757633	51	41867										
TBC1D2	0	genome.wustl.edu	37	chr9	100961795	100961795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tcagcctccagccgctcccgGtggaccatgcgcagctgccg	12	18	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	9	100961795	100961795	G	T	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.2622	p.H874Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	45	0	0	19	7	26.92	-	-	-	T	100961795	G	T	100961795	3	4	428	1	0	0	0	0	1	0	0	0	15700	1252	44	4	135	4	TBC1D2	9	100961795	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		100961795	40251636	52	41868										
CRAT	0	genome.wustl.edu	37	chr9	131866570	131866570	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctggaggtaggcggtcttgaGccaccactcagacagctggg	15	11	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	9	131866570	131866570	G	A	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.307	p.L103F	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	20	0	0	8	16	61.54	-	-	-	A	131866570	G	A	131866570	3	1	428	1	0	0	0	0	1	0	0	0	3877	971	34	4	1621	4	CRAT	9	131866570	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	30904775	131866570	9346861	53	41869										
LCN8	0	genome.wustl.edu	37	chr9	139651510	139651510	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctgttatatgcaaccttcacGgtcaggttactcccgctcaa	7	13	3	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	9	139651510	139651510	G	C	SNP	LCN8	ENST00000371688	human	ensembl	69_37n	-1	known	silent	c.135	p.T45	0.028	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCN8	HGNC	ENSG00000204001	17	0	0	30	14	31.11	-	-	-	C	139651510	G	C	139651510	2	2	428	1	0	0	0	0	0	0	0	1	8740	1103	39	3		3	LCN8	9	139651510	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	7784940	139651510	1561921	54	41870										
ZEB1	0	genome.wustl.edu	37	chr10	31810284	31810284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aaatgaaccccaggacagcaCagtaaatctacaaagtcctt	6	11	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	10	31810284	31810284	C	A	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.2024	p.T675K	0.952	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	122	0	0	161	61	27.35	-	-	-	A	31810284	C	A	31810284	3	1	428	1	0	0	0	0	1	0	0	0	17719	478	17	4	2061	4	ZEB1	10	31810284	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		31810284	103724463	55	41871										
ABCC2	0	genome.wustl.edu	37	chr10	101569915	101569915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gtgtttccacagagcggctaGagaagtacttgggaggggat	16	6	0	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	10	101569915	101569915	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.1840	p.E614K	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	123	1	0.81	69	28	28.87	-	-	-	A	101569915	G	A	101569915	3	1	428	1	0	0	0	0	1	0	0	0	53	943	33	2	1894	2	ABCC2	10	101569915	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	69759631	101569915	33964832	56	41872										
LUZP2	0	genome.wustl.edu	37	chr11	24750742	24750742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tatgaagagctagaaaagcaGctgaaagaagtctttaagga	11	4	1	5			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	24750742	24750742	G	T	SNP	LUZP2	ENST00000336930	human	ensembl	69_37n	1	known	missense	c.90	p.Q30H	1.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	109	0	0	23	17	42.5	-	-	-	T	24750742	G	T	24750742	3	4	428	1	0	0	0	0	1	0	0	0	9153	962	34	4	96	4	LUZP2	11	24750742	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		24750742	110255774	57	41873										
OR1S1	0	genome.wustl.edu	37	chr11	57983026	57983026	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ttctacggaaccattgtaggCgtgtactttttcccctcctc	7	13	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	57983026	57983026	C	T	SNP	OR1S1	ENST00000309433	human	ensembl	69_37n	1	known	silent	c.810	p.G270	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774	135	0	0	163	91	35.83	-	-	-	T	57983026	C	T	57983026	2	4	428	1	0	0	0	0	0	0	0	1	11045	755	27	1		1	OR1S1	11	57983026	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	33232284	57983026	77023490	58	41874										
PC	0	genome.wustl.edu	37	chr11	66638537	66638537	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	actcacctcgtagctgtgcaCcaccctcatgccacgccctc	6	20	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	66638537	66638537	C	G	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.619	p.V207L	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	55	0	0	80	48	37.5	-	-	-	G	66638537	C	G	66638537	3	3	428	1	0	0	0	0	1	0	0	0	11570	507	18	4	2985	4	PC	11	66638537	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	8655511	66638537	68367979	59	41875										
UCP2	0	genome.wustl.edu	37	chr11	73686076	73686076	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aagggagcctctcgggaagtGcaggcagccatgagggctcg	17	10	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	73686076	73686076	G	T	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	nonsense	c.906	p.C302*	0.000	prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	123	0	0	63	40	38.83	-	-	-	T	73686076	G	T	73686076	4	4	428	1	0	0	0	0	0	1	0	0	17028	1311	46	4	27	4	UCP2	11	73686076	Nonsense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	7047539	73686076	61320440	60	41876										
FAT3	0	genome.wustl.edu	37	chr11	92538383	92538383	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gagtggaaggtctatgtgaaGaggcctctagacagagaaga	15	5	2	5			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	92538383	92538383	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.8961	p.K2987N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	88	0	0	89	50	35.97	-	-	-	T	92538383	G	T	92538383	3	4	428	1	0	0	0	0	1	0	0	0	5737	933	33	2	8999	2	FAT3	11	92538383	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	18852307	92538383	42468133	61	41877										
CCDC82	0	genome.wustl.edu	37	chr11	96117312	96117312	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	acacctacttttctaactagGatatcgctgtcatcactctc	4	13	4	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	96117312	96117312	G	A	SNP	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	silent	c.600	p.I200	0.001	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	124	0	0	477	716	59.92	-	-	-	A	96117312	G	A	96117312	2	1	428	1	0	0	0	0	0	0	0	1	2883	1164	41	2		2	CCDC82	11	96117312	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	3578929	96117312	38889204	62	41878										
PPP2R1B	0	genome.wustl.edu	37	chr11	111613318	111613318	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cgaacatttgctacttggtcTcctgccatttttaatacgat	6	10	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	111613318	111613318	T	C	SNP	PPP2R1B	ENST00000531890	human	ensembl	69_37n	-1	novel	missense	c.511	p.R171G	0.999	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R1B	HGNC	ENSG00000137713	282	1	0.35	159	33	17.19	-	-	-	C	111613318	T	C	111613318	3	2	428	1	0	0	0	0	1	0	0	0	12460	1538	54	5	414	5	PPP2R1B	11	111613318	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	15496006	111613318	23393198	63	41879										
DSCAML1	0	genome.wustl.edu	37	chr11	117306445	117306445	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	agtgtggccaggatgacaggGcagccgatggtgaacagctt	16	8	0	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	11	117306445	117306445	G	C	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.4971	p.C1657W	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	162	1	0.61	71	16	18.39	-	-	-	C	117306445	G	C	117306445	3	2	428	1	0	0	0	0	1	0	0	0	4804	1195	42	4	1398	4	DSCAML1	11	117306445	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	5693127	117306445	17700071	64	41880										
KCNA6	0	genome.wustl.edu	37	chr12	4920089	4920089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aagccggccttcttccggaaCatcatgaacatcattgactt	7	12	3	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	4920089	4920089	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	silent	c.882	p.N294	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	72	0	0	64	55	46.22	-	-	-	T	4920089	C	T	4920089	2	4	428	1	0	0	0	0	0	0	0	1	8061	477	17	4		4	KCNA6	12	4920089	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		4920089	128931806	65	41881										
PTPRO	0	genome.wustl.edu	37	chr12	15673165	15673165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	atctgctgccagcatggtacTacaacttccgggttaccatg	9	12	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	15673165	15673165	T	C	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	1	known	missense	c.1810	p.Y604H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	98	0	0	110	37	25.17	-	-	-	C	15673165	T	C	15673165	3	2	428	1	0	0	0	0	1	0	0	0	12892	1522	53	5	1848	5	PTPRO	12	15673165	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	10753076	15673165	118178730	66	41882										
PDE3A	0	genome.wustl.edu	37	chr12	20790155	20790155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aaatataggaagaaaatgtgGccgtattcttagtcaggtaa	10	4	2	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	20790155	20790155	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.2123	p.G708D	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	120	0	0	200	51	20.32	-	-	-	A	20790155	G	A	20790155	3	1	428	1	0	0	0	0	1	0	0	0	11710	1203	42	4	2157	4	PDE3A	12	20790155	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	5116990	20790155	113061740	67	41883										
GPD1	0	genome.wustl.edu	37	chr12	50500636	50500636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cctgaaagagctgatgcagaCaccaaacttccgtatcacag	8	12	1	4			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	50500636	50500636	C	T	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	missense	c.548	p.T183I	1.000	pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	193	0	0	29	50	63.29	-	-	-	T	50500636	C	T	50500636	3	4	428	1	0	0	0	0	1	0	0	0	6654	478	17	4	566	4	GPD1	12	50500636	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	29710481	50500636	83351259	68	41884										
ERBB3	0	genome.wustl.edu	37	chr12	56488314	56488314	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gatgttcagaatgaatgtcgGccctgccatgagaactgcac	11	10	1	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	56488314	56488314	G	C	SNP	ERBB3	ENST00000550869	human	ensembl	69_37n	1	known	missense	c.74	p.G25A	1.000	NULL	NULL	-	no_errors	ERBB3	HGNC	ENSG00000065361	64	0	0	32	18	36	-	-	-	C	56488314	G	C	56488314	3	2	428	1	0	0	0	0	1	0	0	0	5245	1190	42	4	2022	4	ERBB3	12	56488314	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	5987678	56488314	77363581	69	41885										
OAS1	0	genome.wustl.edu	37	chr12	113355524	113355524	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tggtgagacctcctgcttccTccctgccattcatccctgcc	7	18	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	113355524	113355524	T	C	SNP	OAS1	ENST00000452357	human	ensembl	69_37n	1	known	missense	c.1057	p.S353P	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127	431	2	0.46	209	31	12.92	-	-	-	C	113355524	T	C	113355524	3	2	428	1	0	0	0	0	1	0	0	0	10872	1551	54	5	1075	5	OAS1	12	113355524	Missense_Mutation	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	56867210	113355524	20496371	70	41886										
TAOK3	0	genome.wustl.edu	37	chr12	118590205	118590205	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ttctgcttcttgagcctcatCtagccgtaactgcggacaca	8	13	4	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	118590205	118590205	C	T	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	missense	c.2362	p.D788N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	95	0	0	47	17	26.56	-	-	-	T	118590205	C	T	118590205	3	4	428	1	0	0	0	0	1	0	0	0	15641	913	32	2	342	2	TAOK3	12	118590205	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	5234681	118590205	15261690	71	41887										
TCTN2	0	genome.wustl.edu	37	chr12	124156618	124156618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tttaggaatattgccaattcCgacgtgtggagtgctgaaca	11	7	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	12	124156618	124156618	C	T	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	missense	c.206	p.P69L	0.268	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	227	0	0	37	81	68.64	-	-	-	T	124156618	C	T	124156618	3	4	428	1	0	0	0	0	1	0	0	0	15818	652	23	1	216	1	TCTN2	12	124156618	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	5566413	124156618	9695277	72	41888										
MEIS2	0	genome.wustl.edu	37	chr15	37186920	37186920	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gcacccgactgtacttacttCccccttgctttgcgattgct	7	15	0	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	15	37186920	37186920	C	G	SNP	MEIS2	ENST00000558643	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MEIS2	HGNC	ENSG00000134138	176	0	0	96	156	61.9	-	-	-	G	37186920	C	G	37186920	1	3	428	0	1	0	0	0	0	0	0	0	9539	870	30	2		2	MEIS2	15	37186920	RNA	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		37186920	65344472	73	41889										
CELF6	0	genome.wustl.edu	37	chr15	72579624	72579624	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ggtcagtaaggccggttggcAtccttgggccgctttagctg	15	10	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	15	72579624	72579624	A	G	SNP	CELF6	ENST00000569547	human	ensembl	69_37n	-1	known	silent	c.1428	p.D476	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF6	HGNC	ENSG00000140488	96	0	0	125	80	39.02	-	-	-	G	72579624	A	G	72579624	2	3	428	1	0	0	0	0	0	0	0	1	3249	214	8	5		5	CELF6	15	72579624	Silent	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	35392704	72579624	29951768	74	41890										
ARID3B	0	genome.wustl.edu	37	chr15	74836338	74836338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aacagaagcagccacacctgGctcctctgcagatggatgcc	10	14	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	15	74836338	74836338	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	69_37n	1	known	missense	c.61	p.A21T	0.244	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361	153	0	0	41	25	37.88	-	-	-	A	74836338	G	A	74836338	3	1	428	1	0	0	0	0	1	0	0	0	919	1203	42	4	63	4	ARID3B	15	74836338	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	2256714	74836338	27695054	75	41891										
C15orf39	0	genome.wustl.edu	37	chr15	75498847	75498847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gggggaaggagcagtgaagaGgccactggatgttgactgga	19	5	0	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	15	75498847	75498847	G	T	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	missense	c.458	p.R153M	0.999	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	65	0	0	56	9	13.85	-	-	-	T	75498847	G	T	75498847	3	4	428	1	0	0	0	0	1	0	0	0	1805	1000	35	4	460	4	C15orf39	15	75498847	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	662509	75498847	27032545	76	41892										
CASKIN1	0	genome.wustl.edu	37	chr16	2235149	2235149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ccgcgtgtagggcgtgacccCcgctgccccggccgccagcc	14	20	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	16	2235149	2235149	C	A	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	missense	c.1202	p.G401V	0.694	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	21	0	0	9	8	47.06	-	-	-	A	2235149	C	A	2235149	3	1	428	1	0	0	0	0	1	0	0	0	2691	623	22	4	3129	4	CASKIN1	16	2235149	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		2235149	88119604	77	41893										
MT3	0	genome.wustl.edu	37	chr16	56623468	56623468	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cgtccagttgcttggagaagCccgttcaccgcctccagctg	11	15	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	16	56623468	56623468	C	A	SNP	MT3	ENST00000561640	human	ensembl	69_37n	1	putative	missense	c.101	p.A34D	0.100	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT3	HGNC	ENSG00000087250	51	0	0	8	14	63.64	-	-	-	A	56623468	C	A	56623468	3	1	428	1	0	0	0	0	1	0	0	0	9978	754	26	4		4	MT3	16	56623468	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	54388319	56623468	33731285	78	41894										
NCOR1	0	genome.wustl.edu	37	chr17	15965075	15965075	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ggcagcttcatgcttactctCttttgttttggacacatcca	7	11	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	17	15965075	15965075	C	G	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5521	p.E1841Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	66	0	0	16	9	36	-	-	-	G	15965075	C	G	15965075	3	3	428	1	0	0	0	0	1	0	0	0	10307	922	32	2	1841	2	NCOR1	17	15965075	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		15965075	65230135	79	41895										
LRRC37A	0	genome.wustl.edu	37	chr17	44408126	44408126	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	caaactgtaggccaaaaccgGcagagagtgaagagagtcct	12	9	0	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	17	44408126	44408126	G	A	SNP	LRRC37A	ENST00000320254	human	ensembl	69_37n	1	known	silent	c.3483	p.R1161	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	24	0	0	5	9	64.29	-	-	-	A	44408126	G	A	44408126	2	1	428	1	0	0	0	0	0	0	0	1	9057	1190	42	4		4	LRRC37A	17	44408126	Silent	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	28443051	44408126	36787084	80	41896										
RNF213	0	genome.wustl.edu	37	chr17	78362440	78362440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cactctggtgtacagacacgActggaactatgaacatctct	8	11	2	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	17	78362440	78362440	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.14951	p.D4984G	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	126	0	0	51	110	68.32	-	-	-	G	78362440	A	G	78362440	3	3	428	1	0	0	0	0	1	0	0	0	13563	275	10	5	15520	5	RNF213	17	78362440	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	33954314	78362440	2832770	81	41897										
LAMA1	0	genome.wustl.edu	37	chr18	6997880	6997880	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	cacctacacactcatcatcaCaggctacaagacaaattttt	3	13	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	18	6997880	6997880	C	G	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.4667	p.C1556S	1.000	pfam_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	93	0	0	229	120	34.38	-	-	-	G	6997880	C	G	6997880	3	3	428	1	0	0	0	0	1	0	0	0	8659	478	17	4	4684	4	LAMA1	18	6997880	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09		6997880	71079368	82	41898										
HPN	0	genome.wustl.edu	37	chr19	35540279	35540280	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ttctgacagccatcggggcgINSgcatcctgggccattggtga							TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	19	35540279	35540280	-	A	INS	HPN	ENST00000262626	human	ensembl	69_37n	1	known	frame_shift_ins	c.102_103	p.A34fs	0.042:0.169	NULL	pfam_Peptidase_S1_S6,pfam_Hepsin-SRCR,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707	152	0	0	60	8	11.76	-	-	-	A	35540280	-	A	35540279	7	5	428	1	0	1	1	0	0	0	0	0	7387	1103	39	0	108	0	HPN	19	35540279	Frame_Shift_Ins	INS	-	TCGA-B6-A0I6-01A-11D-A128-09		35540279	23588704	83	41899										
HAS1	0	genome.wustl.edu	37	chr19	52217059	52217059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gcaccatgcgcaggcagcccCgcagccaggccgcgaaggcc	14	18	0	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	19	52217059	52217059	C	T	SNP	HAS1	ENST00000222115	human	ensembl	69_37n	-1	known	missense	c.1358	p.R453Q	0.996	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509	75	0	0	4	3	42.86	-	-	-	T	52217059	C	T	52217059	3	4	428	1	0	0	0	0	1	0	0	0	7012	652	23	1	382	1	HAS1	19	52217059	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	16676780	52217059	6911924	84	41900										
ZNF335	0	genome.wustl.edu	37	chr20	44587919	44587919	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gctcctcaatctgctgcagaGagaagaaggggcgacggcgg	16	10	2	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	20	44587919	44587919	G	C	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	missense	c.2174	p.S725C	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	29	0	0	23	17	42.5	-	-	-	C	44587919	G	C	44587919	3	2	428	1	0	0	0	0	1	0	0	0	17948	942	33	2	1910	2	ZNF335	20	44587919	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		44587919	18437601	85	41901										
CSTF1	0	genome.wustl.edu	37	chr20	54978525	54978525	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctcttgctctctgtggcaggCgcgggtttaagtggacgcca	14	11	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	20	54978525	54978525	C	G	SNP	CSTF1	ENST00000217109	human	ensembl	69_37n	1	known	silent	c.1038	p.G346	0.001	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CSTF1	HGNC	ENSG00000101138	147	1	0.68	97	33	25.38	-	-	-	G	54978525	C	G	54978525	2	3	428	1	0	0	0	0	0	0	0	1	4015	782	27	3		3	CSTF1	20	54978525	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	10390606	54978525	8046995	86	41902										
SEPT5	0	genome.wustl.edu	37	chr22	19707720	19707720	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aagctgaagctcaccatcgtGgacacgccgggattcgggga	14	11	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	22	19707720	19707720	G	C	SNP	SEPT5	ENST00000413258	human	ensembl	69_37n	1	novel	missense	c.10	p.G4R	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_start_codon:pseudogene:no_stop_codon	SEPT5	HGNC	ENSG00000184702	21	0	0	104	65	38.46	-	-	-	C	19707720	G	C	19707720	3	2	428	1	0	0	0	0	1	0	0	0	14155	1335	47	4	339	4	SEPT5	22	19707720	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09		19707720	31596846	87	41903										
CABIN1	0	genome.wustl.edu	37	chr22	24445682	24445682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tctcagaatgttcctcaaatGgtaagtcctgcctcttccca	6	13	3	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	22	24445682	24445682	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	missense	c.656	p.C219Y	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	89	0	0	60	22	26.83	-	-	-	A	24445682	G	A	24445682	3	1	428	1	0	0	0	0	1	0	0	0	2553	1362	47	4	678	4	CABIN1	22	24445682	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	4737962	24445682	26858884	88	41904										
MYO18B	0	genome.wustl.edu	37	chr22	26224905	26224905	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctgctgttctaccagcggacCtttgtctccacgctacagcg	9	15	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	22	26224905	26224905	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	silent	c.2949	p.T983	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	149	0	0	83	62	42.76	-	-	-	T	26224905	C	T	26224905	2	4	428	1	0	0	0	0	0	0	0	1	10138	668	24	4		4	MYO18B	22	26224905	Silent	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	1779223	26224905	25079661	89	41905										
APOL2	0	genome.wustl.edu	37	chr22	36623937	36623937	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tgcgggcttgggctcgtgccCgcaatttgtttactagttct	12	10	1	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	22	36623937	36623937	C	A	SNP	APOL2	ENST00000249066	human	ensembl	69_37n	-1	known	missense	c.527	p.R176L	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	60	0	0	70	9	11.39	-	-	-	A	36623937	C	A	36623937	3	1	428	1	0	0	0	0	1	0	0	0	808	652	23	3	490	3	APOL2	22	36623937	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	10399032	36623937	14680629	90	41906										
PKDREJ	0	genome.wustl.edu	37	chr22	46654201	46654201	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	attcggacgatctggtcatgTatcctctgcatttcttctgg	9	10	5	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	22	46654201	46654201	T	G	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.5019	p.I1673	0.000	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	119	0	0	251	206	45.08	-	-	-	G	46654201	T	G	46654201	2	3	428	1	0	0	0	0	0	0	0	1	12044	1628	57	5		5	PKDREJ	22	46654201	Silent	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09	10030264	46654201	4650365	91	41907										
MAGEB3	0	genome.wustl.edu	37	chrX	30254047	30254047	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctgactacagccatcatgccTcggggtcagaagagtacgct	11	12	2	3			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	X	30254047	30254047	T	C	SNP	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	silent	c.6	p.P2	0.664	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	76	0	0	21	38	64.41	-	-	-	C	30254047	T	C	30254047	2	2	428	1	0	0	0	0	0	0	0	1	9248	1538	54	5		5	MAGEB3	23	30254047	Silent	SNP	T	TCGA-B6-A0I6-01A-11D-A128-09		30254047	125016513	92	41908										
HUWE1	0	genome.wustl.edu	37	chrX	53563526	53563526	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	tcaccaggtgaggtacggaaCaaggcatacatagggttaaa	12	7	1	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	X	53563526	53563526	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12240	p.L4080F	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	239	0	0	180	72	28.46	-	-	-	G	53563526	C	G	53563526	3	3	428	1	0	0	0	0	1	0	0	0	7515	477	17	4	908	4	HUWE1	23	53563526	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	23309479	53563526	101707034	93	41909										
MED12	0	genome.wustl.edu	37	chrX	70361814	70361814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	aacttcaacaacagctctctAgtaagcctgcctgccttccc	5	16	2	0			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	X	70361814	70361814	A	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.6499	p.N2167D	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	206	0	0	97	47	32.64	-	-	-	G	70361814	A	G	70361814	3	3	428	1	0	0	0	0	1	0	0	0	9499	434	15	5	6664	5	MED12	23	70361814	Missense_Mutation	SNP	A	TCGA-B6-A0I6-01A-11D-A128-09	16798288	70361814	84908746	94	41910										
KLHL4	0	genome.wustl.edu	37	chrX	86880629	86880629	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	gttactggcagatcttgaaaCcagttccatgtttactggtg	10	8	1	2			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	X	86880629	86880629	C	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.1157	p.T386N	1.000	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	74	0	0	88	56	38.62	-	-	-	A	86880629	C	A	86880629	3	1	428	1	0	0	0	0	1	0	0	0	8444	507	18	4	1179	4	KLHL4	23	86880629	Missense_Mutation	SNP	C	TCGA-B6-A0I6-01A-11D-A128-09	16518815	86880629	68389931	95	41911										
GABRA3	0	genome.wustl.edu	37	chrX	151358338	151358338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	8	0.594449534762123	1.28344338469063	0.942528735632184	1.45939933259177	0.18266253869969	0.738198193588003	0	ctatgaaccagtccatggccGtcgcatatgccactttaggt	9	12	0	1			TCGA-B6-A0I6-01A-11D-A128-09	TCGA-B6-A0I6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a876398c-5b1d-444f-a360-5fe2db697480	b4a473ab-e3f9-4827-b4fc-30038f3cf711	X	151358338	151358338	G	A	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.1007	p.T336M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	154	0	0	58	81	58.27	-	-	-	A	151358338	G	A	151358338	3	1	428	1	0	0	0	0	1	0	0	0	6211	1145	40	1	479	1	GABRA3	23	151358338	Missense_Mutation	SNP	G	TCGA-B6-A0I6-01A-11D-A128-09	64477709	151358338	3912222	96	41912										
ROR1	0	genome.wustl.edu	37	chr1	64515405	64515405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	accaatgaataacatcaccaCgtctctgggccagacagcag	8	13	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	64515405	64515405	C	T	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.206	p.T69M	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	163	0	0	98	48	32.88	-	-	-	T	64515405	C	T	64515405	3	4	429	1	0	0	0	0	1	0	0	0	13612	536	19	1	216	1	ROR1	1	64515405	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		64515405	184735216	1	41913										
GPR61	0	genome.wustl.edu	37	chr1	110086349	110086349	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tgcagcatgttccgagtggcCcgcgtggctgccatgcagca	14	13	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	110086349	110086349	C	G	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	1	known	silent	c.705	p.A235	0.945	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	44	0	0	17	5	22.73	-	-	-	G	110086349	C	G	110086349	2	3	429	1	0	0	0	0	0	0	0	1	6752	610	22	4		4	GPR61	1	110086349	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	45570944	110086349	139164272	2	41914										
MOV10	0	genome.wustl.edu	37	chr1	113239380	113239380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gactgggatactcactgctgGagcggctgctcacctacaac	11	13	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	113239380	113239380	G	A	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.2110	p.E704K	1.000	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	296	0	0	97	53	35.1	-	-	-	A	113239380	G	A	113239380	3	1	429	1	0	0	0	0	1	0	0	0	9790	1175	41	2	2160	2	MOV10	1	113239380	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	3153031	113239380	136011241	3	41915										
YY1AP1	0	genome.wustl.edu	37	chr1	155638533	155638533	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttagagggttaagaaactcaGtcccttcaaaatgcttcagt	8	8	3	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	155638533	155638533	G	C	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.1178	p.T393S	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	444	0	0	406	118	22.48	-	-	-	C	155638533	G	C	155638533	3	2	429	1	0	0	0	0	1	0	0	0	17605	1029	36	4	1500	4	YY1AP1	1	155638533	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	42399153	155638533	93612088	4	41916										
SLC25A44	0	genome.wustl.edu	37	chr1	156169758	156169758	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	agtgtctacccattcaccctCatccgcacccggttgcaagt	7	16	3	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	156169758	156169758	C	A	SNP	SLC25A44	ENST00000359511	human	ensembl	69_37n	1	known	silent	c.120	p.L40	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A44	HGNC	ENSG00000160785	492	0	0	329	78	19.16	-	-	-	A	156169758	C	A	156169758	2	1	429	1	0	0	0	0	0	0	0	1	14598	813	29	2		2	SLC25A44	1	156169758	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	531225	156169758	93080863	5	41917										
IQGAP3	0	genome.wustl.edu	37	chr1	156502784	156502784	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tcacccacctcagaagcaggCtacgggtgttggagtcatca	11	12	4	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	156502784	156502784	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.4091	p.S1364N	0.992	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	463	0	0	209	45	17.58	-	-	-	T	156502784	C	T	156502784	3	4	429	1	0	0	0	0	1	0	0	0	7870	797	28	4	832	4	IQGAP3	1	156502784	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	333026	156502784	92747837	6	41918										
NTRK1	0	genome.wustl.edu	37	chr1	156848984	156848984	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	caggccccctgggtctggggCagctgctggccgtggctagc	17	14	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	156848984	156848984	C	A	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.1876	p.Q626K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	126	0	0	107	20	15.62	-	-	-	A	156848984	C	A	156848984	3	1	429	1	0	0	0	0	1	0	0	0	10779	711	25	4	2064	4	NTRK1	1	156848984	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	346200	156848984	92401637	7	41919										
SPTA1	0	genome.wustl.edu	37	chr1	158606472	158606472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	caccagctccccctctaggcGtttgtgcttcttcagcaagt	8	15	3	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	158606472	158606472	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.5269	p.R1757C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	145	0	0	79	69	46.62	-	-	-	A	158606472	G	A	158606472	3	1	429	1	0	0	0	0	1	0	0	0	15207	1145	40	1	2054	1	SPTA1	1	158606472	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	1757488	158606472	90644149	8	41920										
GPR161	0	genome.wustl.edu	37	chr1	168066094	168066094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctgaaaggcattcctcctgcTgcctgaagaggaggtggagg	15	9	0	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	168066094	168066094	T	C	SNP	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	missense	c.811	p.S271G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	67	0	0	53	9	14.52	-	-	-	C	168066094	T	C	168066094	3	2	429	1	0	0	0	0	1	0	0	0	6715	1580	55	5	854	5	GPR161	1	168066094	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	9459622	168066094	81184527	9	41921										
METTL13	0	genome.wustl.edu	37	chr1	171763540	171763540	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tccttctttttcccagcacgGccttgctacgatgtcataat	6	13	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	171763540	171763540	G	A	SNP	METTL13	ENST00000361735	human	ensembl	69_37n	1	known	silent	c.1698	p.R566	0.000	pfam_Spermidine/spermine_synthase	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165	185	1	0.54	140	30	17.54	-	-	-	A	171763540	G	A	171763540	2	1	429	1	0	0	0	0	0	0	0	1	9568	1190	42	4		4	METTL13	1	171763540	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	3697446	171763540	77487081	10	41922										
ASTN1	0	genome.wustl.edu	37	chr1	177133537	177133537	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccccgggactcacccagcacGaagtagggcagctccgtgtt	12	15	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	177133537	177133537	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.276	p.F92	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	45	0	0	76	35	31.25	-	-	-	A	177133537	G	A	177133537	2	1	429	1	0	0	0	0	0	0	0	1	1068	1049	37	1		1	ASTN1	1	177133537	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	5369997	177133537	72117084	11	41923										
NMNAT2	0	genome.wustl.edu	37	chr1	183255842	183255842	+	Frame_Shift_Del	DEL	G	G	-													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gctgttctggtaaatgggctGgggggtctcgttttgtggct							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	183255842	183255842	G	-	DEL	NMNAT2	ENST00000287713	human	ensembl	69_37n	-1	known	frame_shift_del	c.403	p.Q135fs	1.000	pfam_Cytidylyltransf	pfam_Cytidylyltransf	-	no_errors	NMNAT2	HGNC	ENSG00000157064	514	0	0	309	55	14.99	-	-	-	-	183255842	G	-	183255842	7	5	429	1	0	1	0	1	0	0	0	0	10571	1357	47	0	548	0	NMNAT2	1	183255842	Frame_Shift_Del	DEL	G	TCGA-B6-A0I8-01A-11W-A050-09	6122305	183255842	65994779	12	41924										
NAV1	0	genome.wustl.edu	37	chr1	201618306	201618306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctcgcgcccaacctgggaaaGccgagccggatccctcgagg	13	16	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	1	201618306	201618306	G	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.510	p.K170N	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	13	0	0	13	6	31.58	-	-	-	T	201618306	G	T	201618306	3	4	429	1	0	0	0	0	1	0	0	0	10255	962	34	4	512	4	NAV1	1	201618306	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	18362464	201618306	47632315	13	41925										
TSSC1	0	genome.wustl.edu	37	chr2	3261182	3261182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcctgattccaattccttcgGcatcctccacacggctgcac	7	17	0	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	3261182	3261182	G	A	SNP	TSSC1	ENST00000382125	human	ensembl	69_37n	-1	known	missense	c.304	p.P102S	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389	108	0	0	79	28	25.93	-	-	-	A	3261182	G	A	3261182	3	1	429	1	0	0	0	0	1	0	0	0	16762	1203	42	4	883	4	TSSC1	2	3261182	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		3261182	239938191	14	41926										
MYCN	0	genome.wustl.edu	37	chr2	16086025	16086025	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcaacgaccttcggtccagcTttctcacgctcagggaccac	9	16	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	16086025	16086025	T	A	SNP	MYCN	ENST00000281043	human	ensembl	69_37n	1	known	missense	c.1201	p.F401I	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323	43	0	0	14	13	48.15	-	-	-	A	16086025	T	A	16086025	3	1	429	1	0	0	0	0	1	0	0	0	10093	1609	56	5	1207	5	MYCN	2	16086025	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	12824843	16086025	227113348	15	41927										
DNAJC27	0	genome.wustl.edu	37	chr2	25174424	25174424	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	actatggatatataaaaggtCtacaagaagaaaacataacc	6	6	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	25174424	25174424	C	G	SNP	DNAJC27	ENST00000264711	human	ensembl	69_37n	-1	known	splice_site	c.529-1	e6-1	1.000	-	-	-	no_errors	DNAJC27	HGNC	ENSG00000115137	98	0	0	58	23	28.4	-	-	-	G	25174424	C	G	25174424	5	3	429	1	0	0	0	0	0	0	1	0	4680	927	32	2	301	2	DNAJC27	2	25174424	Splice_Site	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	9088399	25174424	218024949	16	41928										
FAM98A	0	genome.wustl.edu	37	chr2	33810513	33810513	+	Splice_Site	DEL	T	T	-													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcaccctgcccatcaacaccTacagaataggaaagatattt							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	33810513	33810513	T	-	DEL	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	splice_site_del	c.889-2	e8-2	0.999	-	-	-	no_errors	FAM98A	HGNC	ENSG00000119812	90	0	0	75	22	22	-	-	-	-	33810513	T	-	33810513	8	5	429	1	0	1	0	1	0	0	1	0	5702	1536	53	0	673	0	FAM98A	2	33810513	Splice_Site	DEL	T	TCGA-B6-A0I8-01A-11W-A050-09	8636089	33810513	209388860	17	41929										
ATL2	0	genome.wustl.edu	37	chr2	38527429	38527429	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tctacctgaagcatggacttTggatgtggaagttcttctcc	10	9	3	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	38527429	38527429	T	C	SNP	ATL2	ENST00000378954	human	ensembl	69_37n	-1	known	silent	c.1113	p.P371	0.991	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787	340	0	0	193	63	24.61	-	-	-	C	38527429	T	C	38527429	2	2	429	1	0	0	0	0	0	0	0	1	1111	1799	63	5		5	ATL2	2	38527429	Silent	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	4716916	38527429	204671944	18	41930										
CEP68	0	genome.wustl.edu	37	chr2	65299440	65299440	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttgcatctacccccagagccCcaggcagtagggatgctcgt	11	14	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	65299440	65299440	C	G	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	missense	c.1210	p.P404A	0.423	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	88	0	0	30	6	16.67	-	-	-	G	65299440	C	G	65299440	3	3	429	1	0	0	0	0	1	0	0	0	3287	623	22	4	1216	4	CEP68	2	65299440	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	26772011	65299440	177899933	19	41931										
ZRANB3	0	genome.wustl.edu	37	chr2	136023137	136023137	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcttccttccttaactcttcAgaactgtcatttggagtcca	6	12	3	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	136023137	136023137	A	C	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	silent	c.1506	p.S502	0.041	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	139	0	0	96	20	17.24	-	-	-	C	136023137	A	C	136023137	2	2	429	1	0	0	0	0	0	0	0	1	18317	175	7	5		5	ZRANB3	2	136023137	Silent	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09	70723697	136023137	107176236	20	41932										
ATF2	0	genome.wustl.edu	37	chr2	175939354	175939354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	taatcaacttcctgagggctGtgactgggaggaaggagcca	14	8	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	175939354	175939354	G	T	SNP	ATF2	ENST00000264110	human	ensembl	69_37n	-1	known	missense	c.1501	p.Q501K	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF2	HGNC	ENSG00000115966	63	0	0	92	23	20	-	-	-	T	175939354	G	T	175939354	3	4	429	1	0	0	0	0	1	0	0	0	1084	1386	48	4	20	4	ATF2	2	175939354	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	39916217	175939354	67260019	21	41933										
TTN	0	genome.wustl.edu	37	chr2	179449278	179449278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccttgttgactttggtgactCgtgcattctttggttcacta	9	9	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	179449278	179449278	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.57296	p.R19099P	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	98	0	0	76	32	29.63	-	-	-	G	179449278	C	G	179449278	3	3	429	1	0	0	0	0	1	0	0	0	16832	884	31	3	43187	3	TTN	2	179449278	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	3509924	179449278	63750095	22	41934										
ZC3H15	0	genome.wustl.edu	37	chr2	187370515	187370515	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gtcctgaactggtcaatgatGatgatgaggaagcagatgat	13	5	1	7			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	187370515	187370515	G	A	SNP	ZC3H15	ENST00000337859	human	ensembl	69_37n	1	known	missense	c.913	p.D305N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	123	0	0	86	27	23.89	-	-	-	A	187370515	G	A	187370515	3	1	429	1	0	0	0	0	1	0	0	0	17663	1290	45	2	943	2	ZC3H15	2	187370515	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	7921237	187370515	55828858	23	41935										
ANKAR	0	genome.wustl.edu	37	chr2	190602506	190602506	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	aagtggaataatgaccatatCtatttttgaacgttttcttg	7	5	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	190602506	190602506	C	G	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.3521	p.S1174C	0.467	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	159	0	0	107	33	23.57	-	-	-	G	190602506	C	G	190602506	3	3	429	1	0	0	0	0	1	0	0	0	623	913	32	2	3587	2	ANKAR	2	190602506	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	3231991	190602506	52596867	24	41936										
MAP2	0	genome.wustl.edu	37	chr2	210559945	210559945	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tcctctgagaaagcagagaaGggtcttagttcagtgccaga	12	8	3	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	2	210559945	210559945	G	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.3051	p.K1017N	0.428	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	94	0	0	58	14	19.44	-	-	-	T	210559945	G	T	210559945	3	4	429	1	0	0	0	0	1	0	0	0	9306	991	35	4	3065	4	MAP2	2	210559945	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	19957439	210559945	32639428	25	41937										
ARHGEF3	0	genome.wustl.edu	37	chr3	56766419	56766420	+	Frame_Shift_Ins	INS	-	-	A													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gtgacggctcgagtgatcacINSaagcacttcttggaacagga							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	56766419	56766420	-	A	INS	ARHGEF3	ENST00000338458	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1171_1170	p.V390fs	1.000:0.949	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947	47	0	0	47	40	45.98	-	-	-	A	56766420	-	A	56766419	7	5	429	1	0	1	1	0	0	0	0	0	906	478	17	0	513	0	ARHGEF3	3	56766419	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09		56766419	141256011	26	41938										
DNAH12	0	genome.wustl.edu	37	chr3	57343879	57343879	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	agggtgttgagtaaatggaaGtttctaccagaaaacaaatt	10	4	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	57343879	57343879	G	C	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.8296	p.L2766V	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	63	0	0	67	27	28.72	-	-	-	C	57343879	G	C	57343879	3	2	429	1	0	0	0	0	1	0	0	0	4636	1029	36	4	1010	4	DNAH12	3	57343879	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	577460	57343879	140678551	27	41939										
PTPRG	0	genome.wustl.edu	37	chr3	62259418	62259418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccttgttggaagccattcttGgaaaggagactgaagtatct	11	7	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	62259418	62259418	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.3364	p.G1122R	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	192	0	0	167	26	13.47	-	-	-	A	62259418	G	A	62259418	3	1	429	1	0	0	0	0	1	0	0	0	12885	1349	47	4	3454	4	PTPRG	3	62259418	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	4915539	62259418	135763012	28	41940										
PLCH1	0	genome.wustl.edu	37	chr3	155212270	155212270	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gctgaacaacctgatgtgctCttgtttcactgaatgataac	8	9	2	4			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	155212270	155212270	C	G	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.1895	p.R632T	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	250	0	0	358	69	16.16	-	-	-	G	155212270	C	G	155212270	3	3	429	1	0	0	0	0	1	0	0	0	12111	913	32	2	3237	2	PLCH1	3	155212270	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	92952852	155212270	42810160	29	41941										
MUC4	0	genome.wustl.edu	37	chr3	195507242	195507242	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggtgacgtgacctgtggatgCtgaggaagggctggtgacat	18	6	0	4			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	195507242	195507242	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11209	p.A3737S	0.018	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	11	0	0	20	11	35.48	-	-	-	A	195507242	C	A	195507242	3	1	429	1	0	0	0	0	1	0	0	0	10050	797	28	4		4	MUC4	3	195507242	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	40294972	195507242	2515188	30	41942										
MUC4	0	genome.wustl.edu	37	chr3	195512103	195512103	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gtggataatgaggaagcatcGgtgtcatgaagagcggtggc	17	5	1	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	3	195512103	195512103	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.6348	p.T2116	0.138	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	34	0	0	25	7	21.88	-	-	-	A	195512103	G	A	195512103	2	1	429	1	0	0	0	0	0	0	0	1	10050	1103	39	1		1	MUC4	3	195512103	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	4861	195512103	2510327	31	41943										
FAM193A	0	genome.wustl.edu	37	chr4	2648490	2648491	+	Frame_Shift_Ins	INS	-	-	T													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggtaccagcgttccgaggagINSgagctgcgcagagtcgccga							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	4	2648490	2648491	-	T	INS	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	frame_shift_ins	c.369_370	p.E123fs	0.990:1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	42	0	0	19	12	38.71	-	-	-	T	2648491	-	T	2648490	7	5	429	1	0	1	1	0	0	0	0	0	5566	991	35	0	379	0	FAM193A	4	2648490	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09		2648490	188505786	32	41944	340	2								
FAM193A	0	genome.wustl.edu	37	chr4	2648493	2648494	+	Frame_Shift_Ins	INS	-	-	C													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	accagcgttccgaggaggagINSctgcgcagagtcgccgagga							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	4	2648493	2648494	-	C	INS	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	frame_shift_ins	c.372_373	p.L124fs	1.000:1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	41	0	0	18	12	40	-	-	-	C	2648494	-	C	2648493	7	5	429	1	0	1	1	0	0	0	0	0	5566	962	34	0	382	0	FAM193A	4	2648493	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09	3	2648493	188505783	33	41945	340	2								
HPSE	0	genome.wustl.edu	37	chr4	84227420	84227420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctccaaagaatacttgcctcAtcaccacttctattcccatt	2	15	3	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	4	84227420	84227420	A	T	SNP	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	missense	c.1142	p.M381K	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083	191	0	0	105	34	24.46	-	-	-	T	84227420	A	T	84227420	3	4	429	1	0	0	0	0	1	0	0	0	7395	217	8	5	505	5	HPSE	4	84227420	Missense_Mutation	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09	81578927	84227420	106926856	34	41946										
UGT8	0	genome.wustl.edu	37	chr4	115586909	115586909	+	Frame_Shift_Del	DEL	C	C	-													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggttaccacaaaatgacctgCttggtaagtcaatgatgtgt							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	4	115586909	115586909	C	-	DEL	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	frame_shift_del	c.1039	p.H349fs	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	326	0	0	65	69	50.36	-	-	-	-	115586909	C	-	115586909	7	5	429	1	0	1	0	1	0	0	0	0	17062	797	28	0	1049	0	UGT8	4	115586909	Frame_Shift_Del	DEL	C	TCGA-B6-A0I8-01A-11W-A050-09	31359489	115586909	75567367	35	41947										
IL17B	0	genome.wustl.edu	37	chr5	148756510	148756510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	aggggccaggggcccaggccGcccttgccccttcctcttgc	13	18	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	5	148756510	148756510	G	A	SNP	IL17B	ENST00000261796	human	ensembl	69_37n	-1	known	missense	c.100	p.R34W	0.011	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17B	HGNC	ENSG00000127743	32	0	0	15	13	46.43	-	-	-	A	148756510	G	A	148756510	3	1	429	1	0	0	0	0	1	0	0	0	7689	1086	38	1	450	1	IL17B	5	148756510	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		148756510	32158750	36	41948										
GRIA1	0	genome.wustl.edu	37	chr5	153030053	153030053	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gtggactgtgaatcagaacgCctcaatgctatcttgggcca	11	10	3	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	5	153030053	153030053	C	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	silent	c.654	p.R218	0.995	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	306	0	0	195	63	24.42	-	-	-	A	153030053	C	A	153030053	2	1	429	1	0	0	0	0	0	0	0	1	6818	726	26	4		4	GRIA1	5	153030053	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	4273543	153030053	27885207	37	41949										
SLC17A3	0	genome.wustl.edu	37	chr6	25850741	25850741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	taagttggtatgtatacaacCattgtgctaactaaccattg	7	7	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	6	25850741	25850741	C	A	SNP	SLC17A3	ENST00000397060	human	ensembl	69_37n	-1	known	missense	c.939	p.M313I	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564	255	0	0	155	79	33.62	-	-	-	A	25850741	C	A	25850741	3	1	429	1	0	0	0	0	1	0	0	0	14507	594	21	4	577	4	SLC17A3	6	25850741	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		25850741	145264326	38	41950										
PKHD1	0	genome.wustl.edu	37	chr6	51824744	51824744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccattctccactgtgacgttGtcgccatcttgtggcagcct	9	14	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	6	51824744	51824744	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.5832	p.D1944E	1.000	pfam_G8_domain	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	170	0	0	179	40	18.26	-	-	-	T	51824744	G	T	51824744	3	4	429	1	0	0	0	0	1	0	0	0	12045	1368	48	4	6559	4	PKHD1	6	51824744	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	25974003	51824744	119290323	39	41951										
HIVEP2	0	genome.wustl.edu	37	chr6	143074259	143074259	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atagatcaatgtagctgactCttttctgatgaaggatcttt	8	6	4	4			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	6	143074259	143074259	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	silent	c.7326	p.K2442	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	154	0	0	129	25	16.23	-	-	-	T	143074259	C	T	143074259	2	4	429	1	0	0	0	0	0	0	0	1	7238	912	32	2		2	HIVEP2	6	143074259	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	91249515	143074259	28040808	40	41952										
HIP1	0	genome.wustl.edu	37	chr7	75174474	75174474	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cttggcataaaactctttagGggatgctgtaccctagggaa	11	8	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	7	75174474	75174474	G	C	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.2572	p.P858A	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	98	0	0	52	12	18.75	-	-	-	C	75174474	G	C	75174474	3	2	429	1	0	0	0	0	1	0	0	0	7165	1232	43	4	565	4	HIP1	7	75174474	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		75174474	83964189	41	41953										
SGCE	0	genome.wustl.edu	37	chr7	94232698	94232698	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tgactacatctcaattgattCtgtggattttcaacttctcg	6	9	4	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	7	94232698	94232698	C	G	SNP	SGCE	ENST00000445866	human	ensembl	69_37n	-1	known	missense	c.729	p.Q243H	0.998	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990	167	0	0	153	44	22.34	-	-	-	G	94232698	C	G	94232698	3	3	429	1	0	0	0	0	1	0	0	0	14290	912	32	2	760	2	SGCE	7	94232698	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	19058224	94232698	64905965	42	41954										
FLNC	0	genome.wustl.edu	37	chr7	128482326	128482326	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gacatcaaggtgatccccaaCggcgacggcaccttccgctg	11	15	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	7	128482326	128482326	C	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.2163	p.N721K	0.029	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	55	0	0	10	4	26.67	-	-	-	A	128482326	C	A	128482326	3	1	429	1	0	0	0	0	1	0	0	0	5981	535	19	3	2217	3	FLNC	7	128482326	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	34249628	128482326	30656337	43	41955										
MLL3	0	genome.wustl.edu	37	chr7	151917808	151917808	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	acacaccatcctgggtataaGtcttgggtgggtctaaaatt	10	8	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	7	151917808	151917808	G	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.3512	p.T1171S	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	107	0	0	129	30	18.87	-	-	-	C	151917808	G	C	151917808	3	2	429	1	0	0	0	0	1	0	0	0	9693	1029	36	4	11371	4	MLL3	7	151917808	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	23435482	151917808	7220855	44	41956										
YTHDF3	0	genome.wustl.edu	37	chr8	64099266	64099266	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccccagttagcagtgcagcaCctaaaccaacctcctgggct	8	16	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	8	64099266	64099266	C	T	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	94	0	0	134	20	12.99	-	-	-	T	64099266	C	T	64099266	1	4	429	0	1	0	0	0	0	0	0	0	17597	506	18	4		4	YTHDF3	8	64099266	RNA	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		64099266	82264756	45	41957										
ARFGEF1	0	genome.wustl.edu	37	chr8	68189547	68189547	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttggaagagactgacaatctAtcatcaggtaaggatggtgt	12	5	3	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	8	68189547	68189547	A	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	silent	c.1173	p.D391	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	131	0	0	239	41	14.64	-	-	-	G	68189547	A	G	68189547	2	3	429	1	0	0	0	0	0	0	0	1	854	446	16	5		5	ARFGEF1	8	68189547	Silent	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09	4090281	68189547	78174475	46	41958										
ZNF658	0	genome.wustl.edu	37	chr9	40774719	40774719	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	accatgttcataagatttctCttcagcatgagctttctcat	5	10	4	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	9	40774719	40774719	C	G	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.556	p.E186Q	0.554	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	29	0	0	19	10	34.48	-	-	-	G	40774719	C	G	40774719	3	3	429	1	0	0	0	0	1	0	0	0	18165	922	32	2	2627	2	ZNF658	9	40774719	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		40774719	100438712	47	41959										
SLC31A1	0	genome.wustl.edu	37	chr9	116021131	116021131	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	accatccttatggagacacaCaaaactgttgggtaagaact	8	9	0	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	9	116021131	116021131	C	G	SNP	SLC31A1	ENST00000374212	human	ensembl	69_37n	1	known	missense	c.360	p.H120Q	1.000	pfam_Cop_transporter	pfam_Cop_transporter	-	no_errors	SLC31A1	HGNC	ENSG00000136868	113	0	0	111	19	14.62	-	-	-	G	116021131	C	G	116021131	3	3	429	1	0	0	0	0	1	0	0	0	14652	477	17	4	370	4	SLC31A1	9	116021131	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	75246412	116021131	25192300	48	41960										
ASTN2	0	genome.wustl.edu	37	chr9	119903677	119903677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tggttgcagctgaccgatctCgatgggcgtgttagcgcgga	16	9	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	9	119903677	119903677	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.1096	p.E366K	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	250	0	0	264	70	20.96	-	-	-	T	119903677	C	T	119903677	3	4	429	1	0	0	0	0	1	0	0	0	1069	899	31	1		1	ASTN2	9	119903677	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	3882546	119903677	21309754	49	41961										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123201946	123201946	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctcaagccatcctgggccccTtctgtcccacacaaaactgt	6	17	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	9	123201946	123201946	T	C	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	silent	c.3453	p.E1151	0.998	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	321	0	0	150	136	47.55	-	-	-	C	123201946	T	C	123201946	2	2	429	1	0	0	0	0	0	0	0	1	3175	1606	56	5		5	CDK5RAP2	9	123201946	Silent	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	3298269	123201946	18011485	50	41962										
ARHGAP12	0	genome.wustl.edu	37	chr10	32197724	32197724	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcttcatattcataatcataTtccacctcaatatacacttg	2	11	4	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	10	32197724	32197724	T	A	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.60	p.E20D	0.988	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	312	0	0	384	77	16.7	-	-	-	A	32197724	T	A	32197724	3	1	429	1	0	0	0	0	1	0	0	0	867	1490	52	5	2552	5	ARHGAP12	10	32197724	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09		32197724	103337023	51	41963										
ANK3	0	genome.wustl.edu	37	chr10	61832621	61832621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gggagagaaccatcttctctGggctgctgggcagactgggt	16	9	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	10	61832621	61832621	G	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.8018	p.P2673L	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	71	0	0	63	17	21.25	-	-	-	A	61832621	G	A	61832621	3	1	429	1	0	0	0	0	1	0	0	0	622	1348	47	4	5456	4	ANK3	10	61832621	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	29634897	61832621	73702126	52	41964										
PRF1	0	genome.wustl.edu	37	chr10	72360527	72360527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gtcacgtccacaccctccccGgccagccatgcaccaggcac	8	21	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	10	72360527	72360527	G	A	SNP	PRF1	ENST00000318971	human	ensembl	69_37n	-1	known	silent	c.132	p.A44	0.006	NULL	pfam_MACPF,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_MACPF,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	PRF1	HGNC	ENSG00000180644	51	0	0	23	8	25.81	-	-	-	A	72360527	G	A	72360527	2	1	429	1	0	0	0	0	0	0	0	1	12559	1103	39	1		1	PRF1	10	72360527	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	10527906	72360527	63174220	53	41965										
SEMA4G	0	genome.wustl.edu	37	chr10	102740951	102740951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	actgatacaggacatagagaGaggaaatcgaggctgtgaga	14	5	0	4			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	10	102740951	102740951	G	C	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.1670	p.R557T	0.998	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	221	0	0	89	40	31.01	-	-	-	C	102740951	G	C	102740951	3	2	429	1	0	0	0	0	1	0	0	0	14124	942	33	2	1720	2	SEMA4G	10	102740951	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	30380424	102740951	32793796	54	41966										
SYT8	0	genome.wustl.edu	37	chr11	1857139	1857139	+	Frame_Shift_Del	DEL	G	G	-													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	caacctgatgtggatggcctGgagtccagcccgggggatgc							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	11	1857139	1857139	G	-	DEL	SYT8	ENST00000381968	human	ensembl	69_37n	1	known	frame_shift_del	c.324	p.E109fs	0.077	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	-	no_errors	SYT8	HGNC	ENSG00000149043	47	0	0	8	2	20	-	-	-	-	1857139	G	-	1857139	7	5	429	1	0	1	0	1	0	0	0	0	15572	1335	47	0	338	0	SYT8	11	1857139	Frame_Shift_Del	DEL	G	TCGA-B6-A0I8-01A-11W-A050-09		1857139	133149377	55	41967										
MADD	0	genome.wustl.edu	37	chr11	47331104	47331104	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggaagcgcctggaagatgatGaagatcgcttgttggccaca	14	8	0	4			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	11	47331104	47331104	G	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.4099	p.E1367K	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	291	0	0	228	53	18.79	-	-	-	A	47331104	G	A	47331104	3	1	429	1	0	0	0	0	1	0	0	0	9219	1291	45	2	4205	2	MADD	11	47331104	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	45473965	47331104	87675412	56	41968										
CATSPER1	0	genome.wustl.edu	37	chr11	65792950	65792950	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gccgtggtggtcttggtgctGatggtagtctcggtgccggt	18	8	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	11	65792950	65792950	G	C	SNP	CATSPER1	ENST00000312106	human	ensembl	69_37n	-1	known	missense	c.901	p.Q301E	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	724	0	0	520	240	31.58	-	-	-	C	65792950	G	C	65792950	3	2	429	1	0	0	0	0	1	0	0	0	2712	1299	45	2	1489	2	CATSPER1	11	65792950	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	18461846	65792950	69213566	57	41969										
ADAMTS15	0	genome.wustl.edu	37	chr11	130343075	130343075	+	Frame_Shift_Del	DEL	A	A	-													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gccaaggcaagtacctgctcAacgggcatttcgtggtgtcg							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	11	130343075	130343075	A	-	DEL	ADAMTS15	ENST00000299164	human	ensembl	69_37n	1	known	frame_shift_del	c.2212	p.N738fs	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	23	0	0	18	2	10	-	-	-	-	130343075	A	-	130343075	7	5	429	1	0	1	0	1	0	0	0	0	260	130	5	0	2242	0	ADAMTS15	11	130343075	Frame_Shift_Del	DEL	A	TCGA-B6-A0I8-01A-11W-A050-09	64550125	130343075	4663441	58	41970										
UTP14C	0	genome.wustl.edu	37	chr13	52605143	52605143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttaagcccataaaagcagagGatgtgggctaccagtcttcc	10	10	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	13	52605143	52605143	G	T	SNP	UTP14C	ENST00000521776	human	ensembl	69_37n	1	known	missense	c.2203	p.D735Y	1.000	NULL	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797	190	0	0	95	40	29.63	-	-	-	T	52605143	G	T	52605143	3	4	429	1	0	0	0	0	1	0	0	0	17193	1174	41	2	2205	2	UTP14C	13	52605143	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		52605143	62564735	59	41971										
MDGA2	0	genome.wustl.edu	37	chr14	47530633	47530633	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atccgctcagaacttcttaaTggacgaccatttttaaacca	5	11	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	14	47530633	47530633	T	A	SNP	MDGA2	ENST00000554762	human	ensembl	69_37n	-1	novel	missense	c.460	p.I154F	0.572	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MDGA2	HGNC	ENSG00000139915	70	0	0	36	52	59.09	-	-	-	A	47530633	T	A	47530633	3	1	429	1	0	0	0	0	1	0	0	0	9478	1451	51	5	1777	5	MDGA2	14	47530633	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09		47530633	59818907	60	41972										
KCNH5	0	genome.wustl.edu	37	chr14	63473181	63473181	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttcttgtcagtcaattccccAtacataaaactgggggggaa	9	9	3	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	14	63473181	63473181	A	G	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	silent	c.207	p.Y69	1.000	pfam_PAS_fold,tigrfam_PAS	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	153	0	0	185	31	14.35	-	-	-	G	63473181	A	G	63473181	2	3	429	1	0	0	0	0	0	0	0	1	8089	224	8	5		5	KCNH5	14	63473181	Silent	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09	15942548	63473181	43876359	61	41973										
SLC10A1	0	genome.wustl.edu	37	chr14	70245196	70245196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ccacattgaggatggtggaaCagagttggacattttggcat	13	6	0	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	14	70245196	70245196	C	T	SNP	SLC10A1	ENST00000216540	human	ensembl	69_37n	-1	known	missense	c.797	p.C266Y	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A1	HGNC	ENSG00000100652	159	0	0	60	39	39.39	-	-	-	T	70245196	C	T	70245196	3	4	429	1	0	0	0	0	1	0	0	0	14462	478	17	4	260	4	SLC10A1	14	70245196	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	6772015	70245196	37104344	62	41974										
DIS3L	0	genome.wustl.edu	37	chr15	66587367	66587367	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atgtgactcattacgtgatcCcagactggaaagttgttcaa	9	8	2	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	15	66587367	66587367	C	G	SNP	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	missense	c.181	p.P61A	1.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	138	0	0	63	12	16	-	-	-	G	66587367	C	G	66587367	3	3	429	1	0	0	0	0	1	0	0	0	4572	623	22	4	187	4	DIS3L	15	66587367	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		66587367	35944025	63	41975										
AMDHD2	0	genome.wustl.edu	37	chr16	2580462	2580462	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttctggagccctcttggctcTgaggacagccacagtggggt	14	11	3	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	16	2580462	2580462	T	G	SNP	AMDHD2	ENST00000413459	human	ensembl	69_37n	1	known	missense	c.1487	p.L496R	0.000	NULL	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	49	0	0	27	4	12.9	-	-	-	G	2580462	T	G	2580462	3	3	429	1	0	0	0	0	1	0	0	0	568	1589	55	5	1567	5	AMDHD2	16	2580462	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09		2580462	87774291	64	41976										
GGA2	0	genome.wustl.edu	37	chr16	23492053	23492053	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cacctgtttgtacagcagaaCtccttgggtgaggaggtcat	12	9	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	16	23492053	23492053	C	T	SNP	GGA2	ENST00000309859	human	ensembl	69_37n	-1	known	missense	c.919	p.V307I	1.000	pfam_GAT,pfscan_GAT	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA2	HGNC	ENSG00000103365	114	0	0	75	14	15.56	-	-	-	T	23492053	C	T	23492053	3	4	429	1	0	0	0	0	1	0	0	0	6405	565	20	4	954	4	GGA2	16	23492053	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	20911591	23492053	66862700	65	41977										
ERN2	0	genome.wustl.edu	37	chr16	23706244	23706244	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tttcctggcttcaggtcccgGtgcactgtgggagaggggca	16	10	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	16	23706244	23706244	G	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.2049	p.H683Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	160	0	0	53	23	30.26	-	-	-	T	23706244	G	T	23706244	3	4	429	1	0	0	0	0	1	0	0	0	5275	1252	44	4	899	4	ERN2	16	23706244	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	214191	23706244	66648509	66	41978										
LONP2	0	genome.wustl.edu	37	chr16	48295483	48295483	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gcaggcccataaagtctgtgTcaaagagataaagaggtaaa	11	6	2	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	16	48295483	48295483	T	G	SNP	LONP2	ENST00000285737	human	ensembl	69_37n	1	known	missense	c.872	p.V291G	1.000	tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC	ENSG00000102910	137	0	0	94	45	32.37	-	-	-	G	48295483	T	G	48295483	3	3	429	1	0	0	0	0	1	0	0	0	8959	1667	58	5	890	5	LONP2	16	48295483	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	24589239	48295483	42059270	67	41979										
NCOR1	0	genome.wustl.edu	37	chr17	15943800	15943800	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	aaagatctcagttcctggctGagcagctgctatatttaagc	9	9	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	15943800	15943800	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.6688	p.Q2230*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	100	0	0	31	38	54.29	-	-	-	A	15943800	G	A	15943800	4	1	429	1	0	0	0	0	0	1	0	0	10307	1299	45	2	650	2	NCOR1	17	15943800	Nonsense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		15943800	65251410	68	41980										
MRPL45	0	genome.wustl.edu	37	chr17	36474595	36474595	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttcttttctagctcagaccaTgaccgacttcataccttggt	6	12	4	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	36474595	36474595	T	C	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	silent	c.471	p.H157	1.000	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	174	0	0	129	21	14	-	-	-	C	36474595	T	C	36474595	2	2	429	1	0	0	0	0	0	0	0	1	9881	1461	51	5		5	MRPL45	17	36474595	Silent	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	20530795	36474595	44720615	69	41981										
GPATCH8	0	genome.wustl.edu	37	chr17	42477506	42477506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	agacccatggctacccccagGctcctgcttgttcaggccgc	10	17	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	42477506	42477506	G	T	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	missense	c.1939	p.P647T	0.701	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	175	0	0	168	40	19.05	-	-	-	T	42477506	G	T	42477506	3	4	429	1	0	0	0	0	1	0	0	0	6644	1203	42	4	2573	4	GPATCH8	17	42477506	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	6002911	42477506	38717704	70	41982										
TEX14	0	genome.wustl.edu	37	chr17	56700371	56700371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gggtgctcccatcaaagcagCggctggggagggagatgagt	18	8	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	56700371	56700371	C	G	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	missense	c.254	p.R85P	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	98	0	0	115	29	20	-	-	-	G	56700371	C	G	56700371	3	3	429	1	0	0	0	0	1	0	0	0	15873	768	27	3	4341	3	TEX14	17	56700371	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	14222865	56700371	24494839	71	41983										
GDPD1	0	genome.wustl.edu	37	chr17	57352538	57352538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gaaggccattgcagctatttGgtagtgtcttgttatttcta	10	6	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	57352538	57352538	G	A	SNP	GDPD1	ENST00000581140	human	ensembl	69_37n	1	known	silent	c.849	p.L283	0.003	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	301	0	0	346	39	10.08	-	-	-	A	57352538	G	A	57352538	2	1	429	1	0	0	0	0	0	0	0	1	6375	1339	47	4		4	GDPD1	17	57352538	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	652167	57352538	23842672	72	41984										
HELZ	0	genome.wustl.edu	37	chr17	65105258	65105258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cctcccctataggtaatcccGaggggttctcatcaatgaag	9	12	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	65105258	65105258	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.4463	p.S1488L	0.034	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	103	0	0	162	54	24.88	-	-	-	A	65105258	G	A	65105258	3	1	429	1	0	0	0	0	1	0	0	0	7100	1059	37	1	1385	1	HELZ	17	65105258	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	7752720	65105258	16089952	73	41985										
OTOP2	0	genome.wustl.edu	37	chr17	72927076	72927076	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctgccaagacctcaccttcaCcaacctggatgccctccaca	5	19	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	17	72927076	72927076	C	G	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	missense	c.1346	p.T449S	0.991	NULL	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	77	0	0	86	12	12.24	-	-	-	G	72927076	C	G	72927076	3	3	429	1	0	0	0	0	1	0	0	0	11379	507	18	4	1364	4	OTOP2	17	72927076	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	7821818	72927076	8268134	74	41986										
POTEC	0	genome.wustl.edu	37	chr18	14542680	14542680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cctgagcatgacgatgagatCctttctggggaccttacccc	10	13	1	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	18	14542680	14542680	C	A	SNP	POTEC	ENST00000358970	human	ensembl	69_37n	-1	known	missense	c.466	p.D156Y	0.001	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEC	HGNC	ENSG00000183206	321	0	0	116	92	44.23	-	-	-	A	14542680	C	A	14542680	3	1	429	1	0	0	0	0	1	0	0	0	12336	855	30	2	1206	2	POTEC	18	14542680	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		14542680	63534568	75	41987										
MUC16	0	genome.wustl.edu	37	chr19	9065990	9065990	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gaagtgtggctcagctttggAggtgaactggttacaagttc	14	6	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	9065990	9065990	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.21456	p.P7152	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	588	0	0	508	209	29.07	-	-	-	G	9065990	A	G	9065990	2	3	429	1	0	0	0	0	0	0	0	1	10045	291	11	5		5	MUC16	19	9065990	Silent	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09		9065990	50062993	76	41988										
ZNF317	0	genome.wustl.edu	37	chr19	9271595	9271596	+	Frame_Shift_Ins	INS	-	-	G													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gaatgtcggcagtgcgggaaINSgaccttccgaaaccagtcca							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	9271595	9271596	-	G	INS	ZNF317	ENST00000247956	human	ensembl	69_37n	1	known	frame_shift_ins	c.1274_1275	p.T426fs	0.601:0.025	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	197	0	0	77	60	43.8	-	-	-	G	9271596	-	G	9271595	7	5	429	1	0	1	1	0	0	0	0	0	17931	72	3	0	1296	0	ZNF317	19	9271595	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09	205605	9271595	49857388	77	41989										
ZNF317	0	genome.wustl.edu	37	chr19	9271933	9271934	+	Frame_Shift_Ins	INS	-	-	A													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atgcgatcactgtgggaaggINSccttcagcataggctccaac							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	9271933	9271934	-	A	INS	ZNF317	ENST00000247956	human	ensembl	69_37n	1	known	frame_shift_ins	c.1612_1613	p.A538fs	0.836:0.860	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803	153	0	0	83	64	43.54	-	-	-	A	9271934	-	A	9271933	7	5	429	1	0	1	1	0	0	0	0	0	17931	1203	42	0	1634	0	ZNF317	19	9271933	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09	338	9271933	49857050	78	41990										
COL5A3	0	genome.wustl.edu	37	chr19	10088137	10088137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ttgccagtggggccagggggGccacgttctccctgttgtgg	17	11	1	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	10088137	10088137	G	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	silent	c.3138	p.G1046	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	128	0	0	51	18	26.09	-	-	-	A	10088137	G	A	10088137	2	1	429	1	0	0	0	0	0	0	0	1	3728	1190	42	4		4	COL5A3	19	10088137	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	816204	10088137	49040846	79	41991										
CPAMD8	0	genome.wustl.edu	37	chr19	17057997	17057997	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggcgtttgccaggatgcccaAcaaactggatgcccttggga	13	11	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	17057997	17057997	A	T	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.2690	p.V897D	0.998	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	151	0	0	50	66	56.41	-	-	-	T	17057997	A	T	17057997	3	4	429	1	0	0	0	0	1	0	0	0	3825	43	2	5	3196	5	CPAMD8	19	17057997	Missense_Mutation	SNP	A	TCGA-B6-A0I8-01A-11W-A050-09	6969860	17057997	42070986	80	41992										
NPHS1	0	genome.wustl.edu	37	chr19	36330494	36330494	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tcacaacctttaatcctgatGgagggtcagggcggcctatg	12	10	2	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	36330494	36330494	G	C	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	missense	c.2831	p.P944R	0.982	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	239	0	0	101	39	27.86	-	-	-	C	36330494	G	C	36330494	3	2	429	1	0	0	0	0	1	0	0	0	10654	1348	47	4	930	4	NPHS1	19	36330494	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	19272497	36330494	22798489	81	41993										
PSMC4	0	genome.wustl.edu	37	chr19	40480261	40480261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggagctgctcaagcccaacgCctcagtggccctccacaagc	10	17	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	40480261	40480261	C	T	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.383	p.A128V	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	44	0	0	30	11	26.83	-	-	-	T	40480261	C	T	40480261	3	4	429	1	0	0	0	0	1	0	0	0	12769	739	26	4	397	4	PSMC4	19	40480261	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	4149767	40480261	18648722	82	41994										
NLRP9	0	genome.wustl.edu	37	chr19	56244140	56244140	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tatttcaaggtcttctccccTctctagcctctgtttcacac	4	15	6	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	56244140	56244140	T	C	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.1057	p.R353G	0.015	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	156	0	0	124	101	44.89	-	-	-	C	56244140	T	C	56244140	3	2	429	1	0	0	0	0	1	0	0	0	10556	1550	54	5	1950	5	NLRP9	19	56244140	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	15763879	56244140	2884843	83	41995										
ZNF749	0	genome.wustl.edu	37	chr19	57953288	57953288	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gaggatgtggccatatatttCtcccaagaggaatgggggat	14	6	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	19	57953288	57953288	C	T	SNP	ZNF749	ENST00000334181	human	ensembl	69_37n	1	known	silent	c.51	p.F17	0.396	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	498	0	0	168	170	50.3	-	-	-	T	57953288	C	T	57953288	2	4	429	1	0	0	0	0	0	0	0	1	18225	912	32	2		2	ZNF749	19	57953288	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	1709148	57953288	1175695	84	41996										
CHGB	0	genome.wustl.edu	37	chr20	5904091	5904091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tgcctatttcatgtctgacaCcagagaagagaaaaggttct	9	8	3	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	20	5904091	5904091	C	A	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.1301	p.T434N	0.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	132	0	0	76	50	39.68	-	-	-	A	5904091	C	A	5904091	3	1	429	1	0	0	0	0	1	0	0	0	3368	507	18	4	1315	4	CHGB	20	5904091	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		5904091	57121429	85	41997										
PMEPA1	0	genome.wustl.edu	37	chr20	56227380	56227380	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggccgcccagcctggcactaTccatcaggtcactgtcgaag	11	15	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	20	56227380	56227380	T	A	SNP	PMEPA1	ENST00000341744	human	ensembl	69_37n	-1	known	missense	c.593	p.D198V	0.998	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225	77	0	0	7	25	78.12	-	-	-	A	56227380	T	A	56227380	3	1	429	1	0	0	0	0	1	0	0	0	12206	1435	50	5	274	5	PMEPA1	20	56227380	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	50323289	56227380	6798140	86	41998										
CLDN17	0	genome.wustl.edu	37	chr21	31538837	31538837	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atgttgctgccaacaaaagcTgatactctccactgaggcag	9	11	1	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	21	31538837	31538837	T	A	SNP	CLDN17	ENST00000286808	human	ensembl	69_37n	-1	known	silent	c.99	p.S33	0.219	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282	130	0	0	111	28	20.14	-	-	-	A	31538837	T	A	31538837	2	1	429	1	0	0	0	0	0	0	0	1	3508	1567	55	5		5	CLDN17	21	31538837	Silent	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09		31538837	16591058	87	41999										
KCNJ6	0	genome.wustl.edu	37	chr21	39086885	39086886	+	Frame_Shift_Ins	INS	-	-	GG													0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cttcttgggttgagagatttINSttacaaacatgcatcccacc							TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	21	39086885	39086886	-	GG	INS	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	frame_shift_ins	c.575_574	p.K192fs	1.000:1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	17	0	0	33	42	56	-	-	-	GG	39086886	-	GG	39086885	7	5	429	1	0	1	1	0	0	0	0	0	8109	1841	64	0	704	0	KCNJ6	21	39086885	Frame_Shift_Ins	INS	-	TCGA-B6-A0I8-01A-11W-A050-09	7548048	39086885	9043010	88	42000										
ERG	0	genome.wustl.edu	37	chr21	39817428	39817428	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gggacgcgtgggctcatcttGgaagtctgtccatagtcgct	14	10	3	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	21	39817428	39817428	G	C	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	silent	c.156	p.S52	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	124	0	0	90	20	18.18	-	-	-	C	39817428	G	C	39817428	2	2	429	1	0	0	0	0	0	0	0	1	5259	1335	47	4		4	ERG	21	39817428	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	730543	39817428	8312467	89	42001										
IGSF5	0	genome.wustl.edu	37	chr21	41142941	41142941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cacactggacccggctcccgGatatttcctgggagctcggt	12	14	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	21	41142941	41142941	G	T	SNP	IGSF5	ENST00000380588	human	ensembl	69_37n	1	novel	missense	c.517	p.D173Y	0.004	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF5	HGNC	ENSG00000183067	135	0	0	67	33	33	-	-	-	T	41142941	G	T	41142941	3	4	429	1	0	0	0	0	1	0	0	0	7656	1174	41	2	531	2	IGSF5	21	41142941	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	1325513	41142941	6986954	90	42002										
MYH9	0	genome.wustl.edu	37	chr22	36681952	36681952	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atctcgtcagccagctcatcCcgctcctgctgggcctggcg	11	17	3	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	22	36681952	36681952	C	G	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	silent	c.5109	p.R1703	1.000	pfam_Myosin_tail,superfamily_tRNA-bd_arm	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	83	0	0	25	18	41.86	-	-	-	G	36681952	C	G	36681952	2	3	429	1	0	0	0	0	0	0	0	1	10114	610	22	4		4	MYH9	22	36681952	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09		36681952	14622614	91	42003										
ASMTL	0	genome.wustl.edu	37	chrX	1554633	1554633	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	cttgtccaccggcttctccaGaatcagccccccgactgtct	7	18	3	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	1554633	1554633	G	A	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	silent	c.292	p.L98	0.973	pfam_Maf,tigrfam_Maf	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	129	0	0	49	30	37.97	-	-	-	A	1554633	G	A	1554633	2	1	429	1	0	0	0	0	0	0	0	1	1050	933	33	2		2	ASMTL	23	1554633	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09		1554633	153715927	92	42004										
YY2	0	genome.wustl.edu	37	chrX	21875634	21875634	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gataagcccttcgtgtgcccCttcgatgtttgcaacaggaa	10	11	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	21875634	21875634	C	G	SNP	YY2	ENST00000429584	human	ensembl	69_37n	1	known	silent	c.1032	p.P344	0.499	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY2	HGNC	ENSG00000230797	53	0	0	27	6	18.18	-	-	-	G	21875634	C	G	21875634	2	3	429	1	0	0	0	0	0	0	0	1	17606	668	24	4		4	YY2	23	21875634	Silent	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	20321001	21875634	133394926	93	42005										
RPGR	0	genome.wustl.edu	37	chrX	38144855	38144855	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ctttttggaacctgatggccCgttttttaaaagtcgttttg	9	7	0	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	38144855	38144855	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.3397	p.G1133W	0.038	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	61	0	0	31	21	40.38	-	-	-	A	38144855	C	A	38144855	3	1	429	1	0	0	0	0	1	0	0	0	13634	652	23	3	624	3	RPGR	23	38144855	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	16269221	38144855	117125705	94	42006										
NXF5	0	genome.wustl.edu	37	chrX	101092628	101092628	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	agcagcttcctctgcaggtcTatagagaagaagagaagcaa	11	8	2	3			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	101092628	101092628	T	C	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	splice_site	c.920-2	e13-2	0.446	-	-	-	no_errors	NXF5	HGNC	ENSG00000126952	279	0	0	118	95	44.6	-	-	-	C	101092628	T	C	101092628	5	2	429	1	0	0	0	0	0	0	1	0	10859	1536	53	5	187	5	NXF5	23	101092628	Splice_Site	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	62947773	101092628	54177932	95	42007										
RAB40A	0	genome.wustl.edu	37	chrX	102755666	102755666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	gaagtcataggcctggtcggGgctgcccggggcgctcatgg	18	11	2	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	102755666	102755666	G	T	SNP	RAB40A	ENST00000304236	human	ensembl	69_37n	-1	known	missense	c.19	p.P7T	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476	66	0	0	41	10	19.61	-	-	-	T	102755666	G	T	102755666	3	4	429	1	0	0	0	0	1	0	0	0	13022	1232	43	4	818	4	RAB40A	23	102755666	Missense_Mutation	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	1663038	102755666	52514894	96	42008										
TRPC5	0	genome.wustl.edu	37	chrX	111155910	111155910	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tgcagcggatctggtggggcCgtgggatagtgacccgtttt	17	8	1	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	111155910	111155910	C	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.509	p.R170L	1.000	smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	99	0	0	89	23	20.54	-	-	-	A	111155910	C	A	111155910	3	1	429	1	0	0	0	0	1	0	0	0	16678	652	23	3	2448	3	TRPC5	23	111155910	Missense_Mutation	SNP	C	TCGA-B6-A0I8-01A-11W-A050-09	8400244	111155910	44114650	97	42009										
LHFPL1	0	genome.wustl.edu	37	chrX	111874827	111874827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	ggcccagccaagccgacaggTacctgtgagaacagggacag	14	12	0	1			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	111874827	111874827	T	C	SNP	LHFPL1	ENST00000371968	human	ensembl	69_37n	-1	known	missense	c.484	p.T162A	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL1	HGNC	ENSG00000182508	83	0	0	119	29	19.33	-	-	-	C	111874827	T	C	111874827	3	2	429	1	0	0	0	0	1	0	0	0	8819	1638	57	5	182	5	LHFPL1	23	111874827	Missense_Mutation	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	718917	111874827	43395733	98	42010										
RENBP	0	genome.wustl.edu	37	chrX	153209420	153209420	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	tacaggcgacaatacatccaTacctgcggggtacgggaggg	14	10	0	0			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	153209420	153209420	T	C	SNP	RENBP	ENST00000393700	human	ensembl	69_37n	-1	known	silent	c.216	p.V72	0.228	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	-	no_errors	RENBP	HGNC	ENSG00000102032	47	0	0	4	9	69.23	-	-	-	C	153209420	T	C	153209420	2	2	429	1	0	0	0	0	0	0	0	1	13308	1393	49	5		5	RENBP	23	153209420	Silent	SNP	T	TCGA-B6-A0I8-01A-11W-A050-09	41334593	153209420	2061140	99	42011										
F8	0	genome.wustl.edu	37	chrX	154091404	154091404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.131313131313131	13	0.0641748074202049	1.91442486085343	2.29597107438017	1.60353535353535	1	1	0	atgcgaagagtgctgcgaatGctataatgagttgggtgcaa	14	5	0	2			TCGA-B6-A0I8-01A-11W-A050-09	TCGA-B6-A0I8-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba80b13a-e20a-441b-b845-b617cc861ce7	4ff30155-adbf-49dd-a3f2-d040142f0b6f	X	154091404	154091404	G	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.6528	p.S2176	0.025	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	180	0	0	230	30	11.54	-	-	-	A	154091404	G	A	154091404	2	1	429	1	0	0	0	0	0	0	0	1	5387	1310	46	4		4	F8	23	154091404	Silent	SNP	G	TCGA-B6-A0I8-01A-11W-A050-09	881984	154091404	1179156	100	42012										
NBPF1	0	genome.wustl.edu	37	chr1	16905869	16905869	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gctgataccaccatgctgacGtttgtggcagaagaggtggg	15	8	0	4			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	16905869	16905869	G	A	SNP	NBPF1	ENST00000430580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.241	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	11	0	0	14	8	36.36	-	-	-	A	16905869	G	A	16905869	1	1	430	0	1	0	0	0	0	0	0	0	10264	1136	40	1		1	NBPF1	1	16905869	RNA	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		16905869	232344752	1	42013										
GJA9	0	genome.wustl.edu	37	chr1	39340570	39340570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tgtttggggtgactgcctcaTgttgttctctccatctatag	10	9	3	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	39340570	39340570	T	C	SNP	GJA9	ENST00000357771	human	ensembl	69_37n	-1	known	missense	c.1201	p.M401V	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233	360	0	0	153	58	27.49	-	-	-	C	39340570	T	C	39340570	3	2	430	1	0	0	0	0	1	0	0	0	6458	1464	51	5	350	5	GJA9	1	39340570	Missense_Mutation	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	22434701	39340570	209910051	2	42014										
PARS2	0	genome.wustl.edu	37	chr1	55224704	55224704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ggttctgtggctggaacacaCgagacagcagcaggcgccgc	15	12	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	55224704	55224704	C	T	SNP	PARS2	ENST00000371279	human	ensembl	69_37n	-1	known	missense	c.131	p.R44H	0.201	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,superfamily_Anticodon-bd,pfscan_aa-tRNA-synth_II,prints_Pro-tRNA-synth_IIa	-	no_errors	PARS2	HGNC	ENSG00000162396	81	0	0	23	33	57.89	-	-	-	T	55224704	C	T	55224704	3	4	430	1	0	0	0	0	1	0	0	0	11540	536	19	1	1300	1	PARS2	1	55224704	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	15884134	55224704	194025917	3	42015										
KANK4	0	genome.wustl.edu	37	chr1	62734091	62734091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	catgcttgtgatctgggccgTcacacttcttctctgcctcg	9	14	4	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	62734091	62734091	T	C	SNP	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	missense	c.2099	p.D700G	0.003	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	54	0	0	42	6	12.5	-	-	-	C	62734091	T	C	62734091	3	2	430	1	0	0	0	0	1	0	0	0	8033	1667	58	5	912	5	KANK4	1	62734091	Missense_Mutation	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	7509387	62734091	186516530	4	42016										
ABCA4	0	genome.wustl.edu	37	chr1	94505646	94505646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	catcgacgtgggctggacacGtggtggagaaacccttagac	14	10	0	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	94505646	94505646	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.3560	p.T1187M	0.138	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	347	1	0.29	105	59	35.98	-	-	-	A	94505646	G	A	94505646	3	1	430	1	0	0	0	0	1	0	0	0	34	1145	40	1	3369	1	ABCA4	1	94505646	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	31771555	94505646	154744975	5	42017										
PIAS3	0	genome.wustl.edu	37	chr1	145578592	145578592	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gatgggggcgatttctgtggCtgcctgtgcatgggcttgga	18	7	1	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	145578592	145578592	C	T	SNP	PIAS3	ENST00000484423	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.206	-	-	-	no_errors	PIAS3	HGNC	ENSG00000131788	307	0	0	419	150	26.36	-	-	-	T	145578592	C	T	145578592	1	4	430	0	1	0	0	0	0	0	0	0	11951	812	28	4		4	PIAS3	1	145578592	RNA	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	51072946	145578592	103672029	6	42018										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185269464	185269465	+	Frame_Shift_Del	DEL	AT	AT	-													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ccatttgatccacctaccacAtagagctggccctatgccaa							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	185269464	185269465	AT	-	DEL	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	frame_shift_del	c.1254_1253	p.Y418fs	1.000:1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	95	0	0	199	58	22.48	-	-	-	-	185269465	AT	-	185269464	7	5	430	1	0	1	0	1	0	0	0	0	7984	224	8	0	690	0	IVNS1ABP	1	185269464	Frame_Shift_Del	DEL	AT	TCGA-B6-A0I9-01A-11W-A050-09	39690872	185269464	63981157	7	42019										
DISP1	0	genome.wustl.edu	37	chr1	223176396	223176396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	atcgtgtagtatttcacttcGaattttttccttttatgaac	5	7	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	223176396	223176396	G	A	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.1657	p.E553K	1.000	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	141	0	0	217	28	11.43	-	-	-	A	223176396	G	A	223176396	3	1	430	1	0	0	0	0	1	0	0	0	4575	1059	37	1	1683	1	DISP1	1	223176396	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	37906932	223176396	26074225	8	42020										
ANTXR1	0	genome.wustl.edu	37	chr2	69408958	69408958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gcctaagaaaaagtggccaaCggtagacgcctcttattatg	10	9	1	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	69408958	69408958	C	T	SNP	ANTXR1	ENST00000303714	human	ensembl	69_37n	1	known	missense	c.1130	p.T377M	0.998	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604	295	0	0	141	109	43.6	-	-	-	T	69408958	C	T	69408958	3	4	430	1	0	0	0	0	1	0	0	0	710	536	19	1	1265	1	ANTXR1	2	69408958	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		69408958	173790415	9	42021										
TMEM182	0	genome.wustl.edu	37	chr2	103414461	103414461	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ggctcatatattgctgcaggTacgtacggtgcaatgggtat	13	7	1	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	103414461	103414461	T	C	SNP	TMEM182	ENST00000412401	human	ensembl	69_37n	1	known	splice_site	c.469+2	e4+2	1.000	-	-	-	no_errors	TMEM182	HGNC	ENSG00000170417	136	0	0	72	32	30.77	-	-	-	C	103414461	T	C	103414461	5	2	430	1	0	0	0	0	0	0	1	0	16196	1652	57	5	485	5	TMEM182	2	103414461	Splice_Site	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	34005503	103414461	139784912	10	42022										
SP3	0	genome.wustl.edu	37	chr2	174820722	174820722	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ctgctgactggatctgtggtAtcacttgatattgaacactg	10	8	2	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	174820722	174820722	A	C	SNP	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	missense	c.518	p.I173R	1.000	superfamily_Galactose-bd-like	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	131	0	0	108	48	30.57	-	-	-	C	174820722	A	C	174820722	3	2	430	1	0	0	0	0	1	0	0	0	15054	449	16	5	1843	5	SP3	2	174820722	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09	71406261	174820722	68378651	11	42023										
TTN	0	genome.wustl.edu	37	chr2	179422748	179422748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gtgatttcatatctcccagcGtcagctgtaacactttcttt	6	11	4	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	179422748	179422748	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.79629	p.D26543	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	45	18	28.57	-	-	-	A	179422748	G	A	179422748	2	1	430	1	0	0	0	0	0	0	0	1	16832	1136	40	1		1	TTN	2	179422748	Silent	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	4602026	179422748	63776625	12	42024										
TTN	0	genome.wustl.edu	37	chr2	179641907	179641907	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	atatttatgaggcacaatgaTgtcactgtttttcaaccata	6	7	2	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	179641907	179641907	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.4783	p.I1595F	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	275	0	0	215	70	24.48	-	-	-	A	179641907	T	A	179641907	3	1	430	1	0	0	0	0	1	0	0	0	16832	1464	51	5	106549	5	TTN	2	179641907	Missense_Mutation	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	219159	179641907	63557466	13	42025										
STAT4	0	genome.wustl.edu	37	chr2	191896229	191896229	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	taacctttgtcacccctttcTgttggtcttgaaactggaaa	7	10	3	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	191896229	191896229	T	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	silent	c.2058	p.T686	1.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	397	0	0	212	77	26.64	-	-	-	A	191896229	T	A	191896229	2	1	430	1	0	0	0	0	0	0	0	1	15358	1567	55	5		5	STAT4	2	191896229	Silent	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	12254322	191896229	51303144	14	42026										
DNAJC13	0	genome.wustl.edu	37	chr3	132245098	132245098	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gcaattaatcgaatgtttcaGaaggagcagagtgaattagt	11	4	1	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	3	132245098	132245098	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	silent	c.6354	p.Q2118	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	171	0	0	157	38	19.49	-	-	-	A	132245098	G	A	132245098	2	1	430	1	0	0	0	0	0	0	0	1	4667	933	33	2		2	DNAJC13	3	132245098	Silent	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		132245098	65777332	15	42027										
EVC2	0	genome.wustl.edu	37	chr4	5624559	5624559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cgaaagggtcagggtcctgaGatcgtccagggcggcctggt	17	10	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	4	5624559	5624559	G	A	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	missense	c.2206	p.L736F	0.933	NULL	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	82	0	0	75	16	17.58	-	-	-	A	5624559	G	A	5624559	3	1	430	1	0	0	0	0	1	0	0	0	5323	942	33	2	1756	2	EVC2	4	5624559	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		5624559	185529717	16	42028										
UGT8	0	genome.wustl.edu	37	chr4	115544067	115544067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	acactccatatttcattctcCtgtggagtgctgttgggata	9	9	2	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	4	115544067	115544067	C	T	SNP	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	silent	c.31	p.L11	1.000	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	80	0	0	65	21	24.42	-	-	-	T	115544067	C	T	115544067	2	4	430	1	0	0	0	0	0	0	0	1	17062	680	24	4		4	UGT8	4	115544067	Silent	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	109919508	115544067	75610209	17	42029										
ADAMTS12	0	genome.wustl.edu	37	chr5	33642057	33642057	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gatgcacttgcctgccatacAccactggaaagggaagaggc	12	11	0	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	5	33642057	33642057	A	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.1576	p.C526S	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	62	0	0	76	15	16.3	-	-	-	T	33642057	A	T	33642057	3	4	430	1	0	0	0	0	1	0	0	0	257	159	6	5	3264	5	ADAMTS12	5	33642057	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09		33642057	147273203	18	42030										
PRDM1	0	genome.wustl.edu	37	chr6	106547224	106547224	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cattgacggctttaatgaagAgaaaagcaactggatgcgct	11	7	0	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	106547224	106547224	A	G	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.461	p.E154G	1.000	pfam_SET_dom,smart_SET_dom,pirsf_Znf_PRDM1,pfscan_SET_dom	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	154	0	0	193	48	19.92	-	-	-	G	106547224	A	G	106547224	3	3	430	1	0	0	0	0	1	0	0	0	12531	304	11	5	488	5	PRDM1	6	106547224	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09		106547224	64567843	19	42031										
UTRN	0	genome.wustl.edu	37	chr6	144832252	144832252	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gactgaagattggtgcaataCcttgatggtatgtctcagga	12	6	1	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	144832252	144832252	C	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.4937	p.T1646S	0.915	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	71	0	0	121	27	18.24	-	-	-	G	144832252	C	G	144832252	3	3	430	1	0	0	0	0	1	0	0	0	17200	507	18	4	5071	4	UTRN	6	144832252	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	38285028	144832252	26282815	20	42032										
PARK2	0	genome.wustl.edu	37	chr6	161781222	161781222	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	agcctgctcggcggctctttCatcgactctgtaggcctggg	13	13	3	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	161781222	161781222	C	T	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	missense	c.1183	p.E395K	0.268	pirsf_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	262	0	0	155	116	42.8	-	-	-	T	161781222	C	T	161781222	3	4	430	1	0	0	0	0	1	0	0	0	11522	835	29	2	222	2	PARK2	6	161781222	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	16948970	161781222	9333845	21	42033										
UNC93A	0	genome.wustl.edu	37	chr6	167709557	167709557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cctccatactgctgggactcGgggccgccccgctgtggtct	13	16	1	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	167709557	167709557	G	A	SNP	UNC93A	ENST00000230256	human	ensembl	69_37n	1	known	missense	c.307	p.G103R	0.988	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494	139	0	0	100	34	25.37	-	-	-	A	167709557	G	A	167709557	3	1	430	1	0	0	0	0	1	0	0	0	17093	1116	39	1	317	1	UNC93A	6	167709557	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	5928335	167709557	3405510	22	42034										
NPY	0	genome.wustl.edu	37	chr7	24331283	24331283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tgcttcttatgttttacaggCttgaagaccctgcaatgtgg	10	8	1	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	24331283	24331283	C	T	SNP	NPY	ENST00000242152	human	ensembl	69_37n	1	known	missense	c.271	p.L91F	1.000	NULL	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	NPY	HGNC	ENSG00000122585	269	0	0	217	39	15.23	-	-	-	T	24331283	C	T	24331283	3	4	430	1	0	0	0	0	1	0	0	0	10680	811	28	4	281	4	NPY	7	24331283	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		24331283	134807380	23	42035										
STAG3L3	0	genome.wustl.edu	37	chr7	72470053	72470053	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	acactgtactctctgtccatGatcatggaaaccatccagtc	6	13	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	72470053	72470053	G	T	SNP	STAG3L3	ENST00000308103	human	ensembl	69_37n	-1	known	silent	c.288	p.I96	0.980	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	STAG3L3	HGNC	ENSG00000174353	1604	0	0	869	129	12.9	-	-	-	T	72470053	G	T	72470053	2	4	430	1	0	0	0	0	0	0	0	1	15337	1280	45	2		2	STAG3L3	7	72470053	Silent	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	48138770	72470053	86668610	24	42036										
LYN	0	genome.wustl.edu	37	chr8	56922638	56922638	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cctggatgatttctacacagCcacggaagggcaataccagc	10	12	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	56922638	56922638	C	A	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.1508	p.A503D	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	51	0	0	22	28	56	-	-	-	A	56922638	C	A	56922638	3	1	430	1	0	0	0	0	1	0	0	0	9174	739	26	4	1554	4	LYN	8	56922638	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		56922638	89441384	25	42037										
VCPIP1	0	genome.wustl.edu	37	chr8	67547342	67547342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tttccctgaaaggcagttacGttatgaagttgctcagattt	9	7	1	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	67547342	67547342	G	A	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	silent	c.3063	p.N1021	0.999	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	116	0	0	88	30	25.42	-	-	-	A	67547342	G	A	67547342	2	1	430	1	0	0	0	0	0	0	0	1	17238	1136	40	1		1	VCPIP1	8	67547342	Silent	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	10624704	67547342	78816680	26	42038										
FAM82B	0	genome.wustl.edu	37	chr8	87498796	87498796	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	atacaccaatagctttttctCctcttctgaggttctgctaa	5	11	4	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	87498796	87498796	C	A	SNP	FAM82B	ENST00000406452	human	ensembl	69_37n	-1	known	nonsense	c.412	p.E138*	0.968	NULL	NULL	-	no_errors	FAM82B	HGNC	ENSG00000176623	138	0	0	52	42	44.21	-	-	-	A	87498796	C	A	87498796	4	1	430	1	0	0	0	0	0	1	0	0	5677	864	30	2	560	2	FAM82B	8	87498796	Nonsense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	19951454	87498796	58865226	27	42039										
KCNQ3	0	genome.wustl.edu	37	chr8	133187705	133187705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	aaggtagtgactcaccaggcCccaccacagggcatctgcat	10	14	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	133187705	133187705	C	G	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.928	p.G310R	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	430	0	0	309	74	19.27	-	-	-	G	133187705	C	G	133187705	3	3	430	1	0	0	0	0	1	0	0	0	8138	623	22	4	1734	4	KCNQ3	8	133187705	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	45688909	133187705	13176317	28	42040										
MPDZ	0	genome.wustl.edu	37	chr9	13206024	13206025	+	Frame_Shift_Del	DEL	CA	CA	-													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ctcctcattagtgtcaggagCacagtttgtcctgtatgtcg							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	13206024	13206025	CA	-	DEL	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	frame_shift_del	c.1365_1364	p.V455fs	0.692:0.996	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	295	0	0	166	72	30	-	-	-	-	13206025	CA	-	13206024	7	5	430	1	0	1	0	1	0	0	0	0	9794	697	25	0	4904	0	MPDZ	9	13206024	Frame_Shift_Del	DEL	CA	TCGA-B6-A0I9-01A-11W-A050-09		13206024	128007407	29	42041										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123232463	123232463	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ttcaaggcaaatacttagatAagatgtttgatcactataaa	6	5	2	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	123232463	123232463	A	C	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.1894	p.Y632D	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	97	0	0	24	10	29.41	-	-	-	C	123232463	A	C	123232463	3	2	430	1	0	0	0	0	1	0	0	0	3175	362	13	5	3875	5	CDK5RAP2	9	123232463	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09	110026439	123232463	17980968	30	42042										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714775	138714775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ttccgaggtgtccagctgtcCttggggagaccgggcatttg	15	10	0	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	138714775	138714775	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.1765	p.G589R	0.562	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	53	0	0	76	20	20.83	-	-	-	T	138714775	C	T	138714775	3	4	430	1	0	0	0	0	1	0	0	0	2636	690	24	4	3104	4	CAMSAP1	9	138714775	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	15482312	138714775	2498656	31	42043										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	8115874	8115875	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	126	0	0	74	17	18.68	-	-	-	T	8115875	-	T	8115874	7	5	430	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-B6-A0I9-01A-11W-A050-09		8115874	127418873	32	42044										
FAM171A1	0	genome.wustl.edu	37	chr10	15325912	15325912	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gcttccatggggcagagtttGgcacgtaggcatgcttcgag							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	15325912	15325912	G	-	DEL	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	frame_shift_del	c.290	p.P97fs	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	191	0	0	125	36	22.36	-	-	-	-	15325912	G	-	15325912	7	5	430	1	0	1	0	1	0	0	0	0	5530	1348	47	0	2410	0	FAM171A1	10	15325912	Frame_Shift_Del	DEL	G	TCGA-B6-A0I9-01A-11W-A050-09	7210038	15325912	120208835	33	42045										
C10orf128	0	genome.wustl.edu	37	chr10	50369647	50369647	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tcactcttacaactcaccttTtggagaaattgtggtttcgc	7	10	3	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	50369647	50369647	T	G	SNP	C10orf128	ENST00000374151	human	ensembl	69_37n	-1	known	missense	c.447	p.Q149H	0.003	NULL	NULL	-	no_errors	C10orf128	HGNC	ENSG00000204161	264	1	0.38	381	79	17.17	-	-	-	G	50369647	T	G	50369647	3	3	430	1	0	0	0	0	1	0	0	0	1602	1841	64	5	35	5	C10orf128	10	50369647	Missense_Mutation	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	35043735	50369647	85165100	34	42046										
MYPN	0	genome.wustl.edu	37	chr10	69948709	69948709	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	aggctgatgaatgaaatagaGtttcgcttggaacgtactcc	11	7	0	4			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	69948709	69948709	G	C	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	missense	c.2751	p.E917D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	327	0	0	472	139	22.75	-	-	-	C	69948709	G	C	69948709	3	2	430	1	0	0	0	0	1	0	0	0	10170	1020	36	4	2797	4	MYPN	10	69948709	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	19579062	69948709	65586038	35	42047										
KCNK18	0	genome.wustl.edu	37	chr10	118969429	118969429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tcgtgtcccgaactggtgttGggaagactctcatactccat	10	11	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	118969429	118969429	G	T	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.774	p.L258F	0.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	290	0	0	205	48	18.97	-	-	-	T	118969429	G	T	118969429	3	4	430	1	0	0	0	0	1	0	0	0	8119	1339	47	4	784	4	KCNK18	10	118969429	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	49020720	118969429	16565318	36	42048										
OR2D3	0	genome.wustl.edu	37	chr11	6943082	6943082	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gaccaaactccaagactacaAaagaactggataaaatgata	6	8	0	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	6943082	6943082	A	G	SNP	OR2D3	ENST00000317834	human	ensembl	69_37n	1	known	missense	c.850	p.K284E	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2D3	HGNC	ENSG00000178358	136	0	0	131	78	37.32	-	-	-	G	6943082	A	G	6943082	3	3	430	1	0	0	0	0	1	0	0	0	11068	15	1	5	852	5	OR2D3	11	6943082	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09		6943082	128063434	37	42049										
OR5D14	0	genome.wustl.edu	37	chr11	55563102	55563102	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	aggtttcacagattacccaaAgcttcagattcctctcttcc	5	13	3	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	55563102	55563102	A	T	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	missense	c.71	p.K24M	0.138	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	83	0	0	137	31	18.45	-	-	-	T	55563102	A	T	55563102	3	4	430	1	0	0	0	0	1	0	0	0	11228	72	3	5	73	5	OR5D14	11	55563102	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09	48620020	55563102	79443414	38	42050										
MRE11A	0	genome.wustl.edu	37	chr11	94194141	94194141	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tactgttttacaagatcttcTacccttaaagttgttccttc	4	10	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	94194141	94194141	T	C	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	silent	c.1287	p.V429	0.980	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	297	0	0	382	463	54.79	-	-	-	C	94194141	T	C	94194141	2	2	430	1	0	0	0	0	0	0	0	1	9831	1509	53	5		5	MRE11A	11	94194141	Silent	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09	38631039	94194141	40812375	39	42051										
IGSF9B	0	genome.wustl.edu	37	chr11	133801654	133801654	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ctctgtggcctcctcaattcGaatggagccatcctccatca	7	15	3	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	133801654	133801654	G	A	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	nonsense	c.1147	p.R383*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	52	0	0	8	14	63.64	-	-	-	A	133801654	G	A	133801654	4	1	430	1	0	0	0	0	0	1	0	0	7660	1066	37	1	2946	1	IGSF9B	11	133801654	Nonsense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	39607513	133801654	1204862	40	42052										
CHD4	0	genome.wustl.edu	37	chr12	6696712	6696712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	acactgctatcttctccctcTttgttgtctcctcctataaa	3	14	4	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	6696712	6696712	T	C	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.3717	p.K1239	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	221	0	0	173	59	25.32	-	-	-	C	6696712	T	C	6696712	2	2	430	1	0	0	0	0	0	0	0	1	3356	1606	56	5		5	CHD4	12	6696712	Silent	SNP	T	TCGA-B6-A0I9-01A-11W-A050-09		6696712	127155183	41	42053										
ETV6	0	genome.wustl.edu	37	chr12	12022707	12022707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gtgatccagctgatgcccagCcccatcatgcaccctctgat	8	16	2	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	12022707	12022707	C	T	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	silent	c.813	p.S271	0.997	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	70	0	0	58	9	13.43	-	-	-	T	12022707	C	T	12022707	2	4	430	1	0	0	0	0	0	0	0	1	5320	738	26	4		4	ETV6	12	12022707	Silent	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	5325995	12022707	121829188	42	42054										
ITPR2	0	genome.wustl.edu	37	chr12	26752146	26752146	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ttttacaattgtttgcaaaaAcctcaggtactccacgtggc	7	10	1	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	26752146	26752146	A	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.3934	p.F1312I	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	532	0	0	611	94	13.28	-	-	-	T	26752146	A	T	26752146	3	4	430	1	0	0	0	0	1	0	0	0	7975	43	2	5	4283	5	ITPR2	12	26752146	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09	14729439	26752146	107099749	43	42055										
SVOP	0	genome.wustl.edu	37	chr12	109334559	109334559	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	aatctcttaaaggatacctaCgaaacacagcacggcaaaga	7	10	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	109334559	109334559	C	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	splice_site	c.572+1	e6+1	1.000	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	229	0	0	174	97	35.79	-	-	-	T	109334559	C	T	109334559	5	4	430	1	0	0	0	0	0	0	1	0	15514	550	19	1		1	SVOP	12	109334559	Splice_Site	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	82582413	109334559	24517336	44	42056										
RNF10	0	genome.wustl.edu	37	chr12	121002888	121002888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	aatgtaggatgttcgacagcGtcacagatatctctctcact	8	10	3	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	121002888	121002888	G	A	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.1694	p.R565H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	180	0	0	114	30	20.83	-	-	-	A	121002888	G	A	121002888	3	1	430	1	0	0	0	0	1	0	0	0	13508	1145	40	1	1721	1	RNF10	12	121002888	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	11668329	121002888	12849007	45	42057										
ATP7B	0	genome.wustl.edu	37	chr13	52508972	52508972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gtctgctgcagcgctgtgccGagatggcttgtcggacgtca	15	11	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	52508972	52508972	G	A	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	missense	c.4318	p.R1440W	0.655	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	84	0	0	24	27	52.94	-	-	-	A	52508972	G	A	52508972	3	1	430	1	0	0	0	0	1	0	0	0	1195	1057	37	1	83	1	ATP7B	13	52508972	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		52508972	62660906	46	42058										
RBM26	0	genome.wustl.edu	37	chr13	79911273	79911273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	agatcttctctatcgctctcCgtaaatgcagaaatctccaa	5	12	4	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	79911273	79911273	C	T	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	silent	c.2697	p.T899	0.927	smart_RRM_dom,pfscan_RRM_dom	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	138	0	0	109	36	24.83	-	-	-	T	79911273	C	T	79911273	2	4	430	1	0	0	0	0	0	0	0	1	13209	639	23	1		1	RBM26	13	79911273	Silent	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	27402301	79911273	35258605	47	42059										
TMTC4	0	genome.wustl.edu	37	chr13	101288959	101288959	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cacagcagcagccaggcattCaatgaatagtagtaattgta	9	8	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	101288959	101288959	C	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.1029	p.L343F	1.000	pfam_DUF1736	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	170	0	0	83	19	18.45	-	-	-	A	101288959	C	A	101288959	3	1	430	1	0	0	0	0	1	0	0	0	16358	825	29	2	1293	2	TMTC4	13	101288959	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	21377686	101288959	13880919	48	42060										
MLH3	0	genome.wustl.edu	37	chr14	75498872	75498872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gagccttgtgcctgttgcttCtcgtaggaatctattggcag	12	9	2	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	14	75498872	75498872	C	G	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.3726	p.E1242D	1.000	pfam_MutL_C,smart_MutL_C	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	262	0	0	69	47	40.52	-	-	-	G	75498872	C	G	75498872	3	3	430	1	0	0	0	0	1	0	0	0	9689	912	32	2	659	2	MLH3	14	75498872	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		75498872	31850668	49	42061										
ATP10A	0	genome.wustl.edu	37	chr15	25925334	25925334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	acactgggtcacccagtaagGcttgcatagtccagtaaggg	12	10	1	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	15	25925334	25925334	G	T	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.3800	p.A1267D	0.163	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	113	0	0	81	34	29.57	-	-	-	T	25925334	G	T	25925334	3	4	430	1	0	0	0	0	1	0	0	0	1120	1203	42	4	707	4	ATP10A	15	25925334	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		25925334	76606058	50	42062										
SRCAP	0	genome.wustl.edu	37	chr16	30750833	30750833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tggcaaagcggggccgcctaCagcccccaagtcccctgggg	14	16	0	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	16	30750833	30750833	C	G	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.9472	p.Q3158E	0.989	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	15	0	0	15	6	28.57	-	-	-	G	30750833	C	G	30750833	3	3	430	1	0	0	0	0	1	0	0	0	15226	479	17	4	9598	4	SRCAP	16	30750833	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		30750833	59603920	51	42063										
HYDIN	0	genome.wustl.edu	37	chr16	71103181	71103181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gcactttaccctgatagcagCaaatccctgggggcgaatgg	12	11	0	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	16	71103181	71103181	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.1963	p.A655S	0.980	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	271	0	0	371	66	15.1	-	-	-	A	71103181	C	A	71103181	3	1	430	1	0	0	0	0	1	0	0	0	7521	710	25	4	13703	4	HYDIN	16	71103181	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	40352348	71103181	19251572	52	42064										
PELP1	0	genome.wustl.edu	37	chr17	4576579	4576579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ctcgctggccgagggagaagGcttgcagggcacaggcaaga	17	10	0	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	4576579	4576579	G	A	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.2243	p.A748V	1.000	pfam_Uncharacterised_NUC202	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	101	0	0	19	37	66.07	-	-	-	A	4576579	G	A	4576579	3	1	430	1	0	0	0	0	1	0	0	0	11798	1203	42	4	1593	4	PELP1	17	4576579	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		4576579	76618631	53	42065										
TP53	0	genome.wustl.edu	37	chr17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ggcaggtcttggccagttggCaaaacatcttgttgagggca	14	8	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	7578526	7578526	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.404	p.C135Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	138	0	0	59	56	48.28	-	-	-	T	7578526	C	T	7578526	3	4	430	1	0	0	0	0	1	0	0	0	16477	710	25	4	894	4	TP53	17	7578526	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	3001947	7578526	73616684	54	42066										
TBC1D28	0	genome.wustl.edu	37	chr17	18544650	18544650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ggcaggcaggttatccgggtCctcatccatctccatcctgc	10	15	2	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	18544650	18544650	C	T	SNP	TBC1D28	ENST00000345096	human	ensembl	69_37n	-1	known	missense	c.16	p.D6N	0.665	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D28	HGNC	ENSG00000189375	130	0	0	94	16	14.41	-	-	-	T	18544650	C	T	18544650	3	4	430	1	0	0	0	0	1	0	0	0	15709	855	30	2	644	2	TBC1D28	17	18544650	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	10966124	18544650	62650560	55	42067										
OTOP2	0	genome.wustl.edu	37	chr17	72929557	72929557	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gctactccctctgggcggtcAtcgtcaacatctgcctccct	8	17	4	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	72929557	72929557	A	T	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	missense	c.1606	p.I536F	1.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	49	0	0	29	7	19.44	-	-	-	T	72929557	A	T	72929557	3	4	430	1	0	0	0	0	1	0	0	0	11379	217	8	5	1628	5	OTOP2	17	72929557	Missense_Mutation	SNP	A	TCGA-B6-A0I9-01A-11W-A050-09	54384907	72929557	8265653	56	42068										
DLGAP1	0	genome.wustl.edu	37	chr18	3567558	3567558	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tttattctcccctgttttgtCaggttcttcagcatcatcca	5	12	5	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	3567558	3567558	C	A	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.1987	p.D663Y	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	271	0	0	278	64	18.71	-	-	-	A	3567558	C	A	3567558	3	1	430	1	0	0	0	0	1	0	0	0	4595	826	29	2	966	2	DLGAP1	18	3567558	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		3567558	74509690	57	42069										
SERPINB3	0	genome.wustl.edu	37	chr18	61322965	61322965	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tatgaagaataggaaagggtGattacaatggaactcttcat	10	4	2	3			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	61322965	61322965	G	C	SNP	SERPINB3	ENST00000283752	human	ensembl	69_37n	-1	known	missense	c.1099	p.H367D	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149	234	0	0	300	74	19.79	-	-	-	C	61322965	G	C	61322965	3	2	430	1	0	0	0	0	1	0	0	0	14190	1290	45	2	77	2	SERPINB3	18	61322965	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	57755407	61322965	16754283	58	42070										
CTDP1	0	genome.wustl.edu	37	chr18	77475211	77475211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ggaggaggaggaggaggacaCggatgaggatgaccacctca	18	7	1	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	77475211	77475211	C	T	SNP	CTDP1	ENST00000299543	human	ensembl	69_37n	1	known	missense	c.1751	p.T584M	0.010	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069	49	0	0	26	5	15.62	-	-	-	T	77475211	C	T	77475211	3	4	430	1	0	0	0	0	1	0	0	0	4034	536	19	1	1781	1	CTDP1	18	77475211	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	16152246	77475211	602037	59	42071										
OR1M1	0	genome.wustl.edu	37	chr19	9204487	9204487	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cccatcctccgactttcgtgCacggacacctctgtgaatag	8	15	1	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	9204487	9204487	C	A	SNP	OR1M1	ENST00000429566	human	ensembl	69_37n	1	known	nonsense	c.567	p.C189*	0.083	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929	83	0	0	72	22	23.4	-	-	-	A	9204487	C	A	9204487	4	1	430	1	0	0	0	0	0	1	0	0	11041	718	25	4	569	4	OR1M1	19	9204487	Nonsense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		9204487	49924496	60	42072										
DNASE2	0	genome.wustl.edu	37	chr19	12989580	12989580	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gctgtatgcagcagaggaggCcggtggagggaagttaggta							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	12989580	12989580	C	-	DEL	DNASE2	ENST00000222219	human	ensembl	69_37n	-1	known	frame_shift_del	c.415	p.A139fs	0.001	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612	169	0	0	35	12	25.53	-	-	-	-	12989580	C	-	12989580	7	5	430	1	0	1	0	1	0	0	0	0	4699	739	26	0	679	0	DNASE2	19	12989580	Frame_Shift_Del	DEL	C	TCGA-B6-A0I9-01A-11W-A050-09	3785093	12989580	46139403	61	42073										
SIX5	0	genome.wustl.edu	37	chr19	46269231	46269232	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tggcttcagtggcagggccaINSggccgggggctggcggcagg							TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	46269231	46269232	-	G	INS	SIX5	ENST00000317578	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1748_1747	p.L583fs	0.236:0.236	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX5	HGNC	ENSG00000177045	23	0	0	4	2	33.33	-	-	-	G	46269232	-	G	46269231	7	5	430	1	0	1	1	0	0	0	0	0	14439	188	7	0	475	0	SIX5	19	46269231	Frame_Shift_Ins	INS	-	TCGA-B6-A0I9-01A-11W-A050-09	33279651	46269231	12859752	62	42074										
AURKC	0	genome.wustl.edu	37	chr19	57743593	57743593	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gagatccaggctcatctacaGtaaggacagtctctgcttcc	9	12	3	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	57743593	57743593	G	C	SNP	AURKC	ENST00000302804	human	ensembl	69_37n	1	known	splice_site	c.296+1	e3+1	1.000	-	-	-	no_errors	AURKC	HGNC	ENSG00000105146	52	0	0	42	11	20.75	-	-	-	C	57743593	G	C	57743593	5	2	430	1	0	0	0	0	0	0	1	0	1228	1043	36	4	312	4	AURKC	19	57743593	Splice_Site	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	11474362	57743593	1385390	63	42075										
ZFP64	0	genome.wustl.edu	37	chr20	50769440	50769440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	ctcccgcatgaaggaggcatCgcatatatcgcagtggaaac	11	11	0	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	20	50769440	50769440	C	A	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1291	p.D431Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	34	0	0	60	15	20	-	-	-	A	50769440	C	A	50769440	3	1	430	1	0	0	0	0	1	0	0	0	17748	884	31	3	1949	3	ZFP64	20	50769440	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		50769440	12256080	64	42076										
FBXO7	0	genome.wustl.edu	37	chr22	32881084	32881084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	gccaaagcactgtccatgccGgagaagtggaagttgagcgg	15	9	0	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	22	32881084	32881084	G	A	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	silent	c.675	p.P225	0.011	pfam_Inhibitor_PI31	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	267	1	0.37	233	59	20.21	-	-	-	A	32881084	G	A	32881084	2	1	430	1	0	0	0	0	0	0	0	1	5806	1103	39	1		1	FBXO7	22	32881084	Silent	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09		32881084	18423482	65	42077										
PRICKLE3	0	genome.wustl.edu	37	chrX	49032341	49032341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tatgatgatggtggcggcgaCggctgggggccctgggtggg	22	7	0	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	49032341	49032341	C	T	SNP	PRICKLE3	ENST00000376317	human	ensembl	69_37n	-1	known	missense	c.1529	p.R510H	0.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	52	0	0	40	37	47.44	-	-	-	T	49032341	C	T	49032341	3	4	430	1	0	0	0	0	1	0	0	0	12569	536	19	1	322	1	PRICKLE3	23	49032341	Missense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09		49032341	106238219	66	42078										
TRO	0	genome.wustl.edu	37	chrX	54955699	54955699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tcagtggtggagccagctctGgctttggaggcacactcagc	14	11	3	0			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	54955699	54955699	G	A	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.2542	p.G848S	0.937	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	36	0	0	40	12	23.08	-	-	-	A	54955699	G	A	54955699	3	1	430	1	0	0	0	0	1	0	0	0	16670	1348	47	4	2584	4	TRO	23	54955699	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	5923358	54955699	100314861	67	42079										
CT47B1	0	genome.wustl.edu	37	chrX	120009253	120009253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	cctcctcctcctcttcctccGtcgcgggcccgatatctgag	8	19	2	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	120009253	120009253	G	A	SNP	CT47B1	ENST00000371311	human	ensembl	69_37n	-1	known	missense	c.272	p.T91M	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446	33	0	0	15	19	55.88	-	-	-	A	120009253	G	A	120009253	3	1	430	1	0	0	0	0	1	0	0	0	4021	1145	40	1	635	1	CT47B1	23	120009253	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	65053554	120009253	35261307	68	42080										
STAG2	0	genome.wustl.edu	37	chrX	123195113	123195113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	accttgtggatagcatgtggGactgtgctactgagctgctg	14	8	0	1			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	123195113	123195113	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.1456	p.D486N	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	177	0	0	160	37	18.78	-	-	-	A	123195113	G	A	123195113	3	1	430	1	0	0	0	0	1	0	0	0	15334	1174	41	2	1510	2	STAG2	23	123195113	Missense_Mutation	SNP	G	TCGA-B6-A0I9-01A-11W-A050-09	3185860	123195113	32075447	69	42081										
NSDHL	0	genome.wustl.edu	37	chrX	152036194	152036194	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	5	0.904872247913239	0.931550951847704	2.02279635258359	0.685140700068634	1	1	0	tggcggcagagcagctctccCgagactcgacactgggtggg	16	12	1	2			TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	152036194	152036194	C	T	SNP	NSDHL	ENST00000370274	human	ensembl	69_37n	1	known	nonsense	c.766	p.R256*	0.001	pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383	60	0	0	54	6	10	-	-	-	T	152036194	C	T	152036194	4	4	430	1	0	0	0	0	0	1	0	0	10743	644	23	1	788	1	NSDHL	23	152036194	Nonsense_Mutation	SNP	C	TCGA-B6-A0I9-01A-11W-A050-09	28841081	152036194	3234366	70	42082										
MMEL1	0	genome.wustl.edu	37	chr1	2524333	2524334	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	gtagatcatgcactctgactINSgctcccggaagtgctgggtg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	2524333	2524334	-	C	INS	MMEL1	ENST00000378412	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1940_1939	p.Q647fs	1.000:1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606	28	0	0	39	127	76.51	-	-	-	C	2524334	-	C	2524333	7	5	431	1	0	1	1	0	0	0	0	0	9717	1580	55	0	419	0	MMEL1	1	2524333	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		2524333	246726288	1	42083										
HSPG2	0	genome.wustl.edu	37	chr1	22172652	22172652	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ttcgatggtgaccaggactgAggcctccagggggccagagc							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	22172652	22172652	A	-	DEL	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	frame_shift_del	c.8413	p.S2805fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	8	0	0	4	5	55.56	-	-	-	-	22172652	A	-	22172652	7	5	431	1	0	1	0	1	0	0	0	0	7484	304	11	0	4898	0	HSPG2	1	22172652	Frame_Shift_Del	DEL	A	TCGA-B6-A0IA-01A-11W-A050-09	19648319	22172652	227077969	2	42084	341	2								
HSPG2	0	genome.wustl.edu	37	chr1	22172657	22172658	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggtgaccaggactgaggcctINSccagggggccagagctgccc							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	22172657	22172658	-	G	INS	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8408_8407	p.E2803fs	1.000:0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	8	0	0	3	5	62.5	-	-	-	G	22172658	-	G	22172657	7	5	431	1	0	1	1	0	0	0	0	0	7484	1551	54	0	4903	0	HSPG2	1	22172657	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	5	22172657	227077964	3	42085	341	2								
GPSM2	0	genome.wustl.edu	37	chr1	109444429	109444429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	taggaagacactactgttggCccgacagcttaaagaccgag	11	10	0	2			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	109444429	109444429	C	T	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.815	p.A272V	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	153	0	0	143	36	20.11	-	-	-	T	109444429	C	T	109444429	3	4	431	1	0	0	0	0	1	0	0	0	6786	739	26	4	841	4	GPSM2	1	109444429	Missense_Mutation	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	87271772	109444429	139806192	4	42086										
ATP1B1	0	genome.wustl.edu	37	chr1	169076073	169076073	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tgacccgccatcgccatggcCcgcgggaaagccaaggagga	14	14	0	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	169076073	169076073	C	G	SNP	ATP1B1	ENST00000367815	human	ensembl	69_37n	1	known	silent	c.6	p.A2	0.998	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	19	0	0	25	5	16.67	-	-	-	G	169076073	C	G	169076073	2	3	431	1	0	0	0	0	0	0	0	1	1136	610	22	4		4	ATP1B1	1	169076073	Silent	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	59631644	169076073	80174548	5	42087										
TTC32	0	genome.wustl.edu	37	chr2	20101529	20101529	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cgaatgtaagcggagtacagTgcctcggcctccgcgtactc							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	20101529	20101529	T	-	DEL	TTC32	ENST00000333610	human	ensembl	69_37n	-1	known	frame_shift_del	c.87	p.L30fs	0.987	pfam_TPR-4	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC32	HGNC	ENSG00000183891	54	0	0	41	45	52.33	-	-	-	-	20101529	T	-	20101529	7	5	431	1	0	1	0	1	0	0	0	0	16798	1683	59	0	380	0	TTC32	2	20101529	Frame_Shift_Del	DEL	T	TCGA-B6-A0IA-01A-11W-A050-09		20101529	223097844	6	42088										
AFTPH	0	genome.wustl.edu	37	chr2	64779110	64779110	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ttgttcatcaaaacaagcagTtagagagctgcaatggtgaa	10	6	2	2			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	64779110	64779110	T	G	SNP	AFTPH	ENST00000422803	human	ensembl	69_37n	1	known	missense	c.502	p.L168V	0.995	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844	87	0	0	53	39	42.39	-	-	-	G	64779110	T	G	64779110	3	3	431	1	0	0	0	0	1	0	0	0	364	1722	60	5	504	5	AFTPH	2	64779110	Missense_Mutation	SNP	T	TCGA-B6-A0IA-01A-11W-A050-09	44677581	64779110	178420263	7	42089										
TTN	0	genome.wustl.edu	37	chr2	179397545	179397545	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	atcacatagaactgttcccaTcttgaaaggcggatgcgctt							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	179397545	179397545	T	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.96093	p.R32031fs	0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	142	0	0	144	47	24.48	-	-	-	-	179397545	T	-	179397545	7	5	431	1	0	1	0	1	0	0	0	0	16832	1432	50	0	4202	0	TTN	2	179397545	Frame_Shift_Del	DEL	T	TCGA-B6-A0IA-01A-11W-A050-09	114618435	179397545	63801828	8	42090										
SCLY	0	genome.wustl.edu	37	chr2	239003107	239003108	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ctgaatagccagtttccaggINScacccagcggcttcccaata							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	239003107	239003108	-	A	INS	SCLY	ENST00000254663	human	ensembl	69_37n	1	known	frame_shift_ins	c.1076_1077	p.T360fs	0.982:0.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	-	no_errors	SCLY	HGNC	ENSG00000132330	31	0	0	61	50	45.05	-	-	-	A	239003108	-	A	239003107	7	5	431	1	0	1	1	0	0	0	0	0	13995	1203	42	0	1090	0	SCLY	2	239003107	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	59605562	239003107	4196266	9	42091										
RBM47	0	genome.wustl.edu	37	chr4	40434810	40434811	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cactgtgtggattttgccatINScttcaatcattttaggggct							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	4	40434810	40434811	-	C	INS	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1400_1399	p.D467fs	1.000:1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	95	0	0	334	1310	79.68	-	-	-	C	40434811	-	C	40434810	7	5	431	1	0	1	1	0	0	0	0	0	13224	1435	50	0	389	0	RBM47	4	40434810	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		40434810	150719466	10	42092										
NEIL3	0	genome.wustl.edu	37	chr4	178274553	178274553	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggaaaacctcatacagaagtCaagatcaacagaaaaactgc	7	9	3	3			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	4	178274553	178274553	C	T	SNP	NEIL3	ENST00000264596	human	ensembl	69_37n	1	known	silent	c.1131	p.V377	0.782	NULL	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674	118	0	0	140	35	20	-	-	-	T	178274553	C	T	178274553	2	4	431	1	0	0	0	0	0	0	0	1	10392	813	29	2		2	NEIL3	4	178274553	Silent	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	137839743	178274553	12879723	11	42093										
FAT1	0	genome.wustl.edu	37	chr4	187521416	187521417	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cattcacttccagggccactINSgcgtgccactgcccatcatt							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	4	187521416	187521417	-	G	INS	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11739_11738	p.V3914fs	0.066:0.343	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	51	0	0	80	44	35.48	-	-	-	G	187521417	-	G	187521416	7	5	431	1	0	1	1	0	0	0	0	0	5735	1567	55	0	2051	0	FAT1	4	187521416	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	9246863	187521416	3632860	12	42094										
PARP8	0	genome.wustl.edu	37	chr5	50091223	50091224	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cttattggtatcctaacaccINSatcttcatcttcatcttctc							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	50091223	50091224	-	A	INS	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	frame_shift_ins	c.1400_1401	p.S468fs	1.000:1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	44	0	0	40	8	16.67	-	-	-	A	50091224	-	A	50091223	7	5	431	1	0	1	1	0	0	0	0	0	11538	594	21	0	1446	0	PARP8	5	50091223	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		50091223	130824037	13	42095										
PCDHB3	0	genome.wustl.edu	37	chr5	140481610	140481610	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	caaatctcctacaccctgttCgtccgcgagaacaacagccc	6	17	1	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	140481610	140481610	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	silent	c.1377	p.F459	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	71	0	0	29	21	42	-	-	-	T	140481610	C	T	140481610	2	4	431	1	0	0	0	0	0	0	0	1	11616	883	31	1		1	PCDHB3	5	140481610	Silent	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	90390387	140481610	40433650	14	42096										
PCDHB12	0	genome.wustl.edu	37	chr5	140590839	140590839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tagtgaagtcgaagaaaatcCcccatttcagaataatttgg	8	7	1	3			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	140590839	140590839	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.2360	p.P787L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	93	0	0	40	18	31.03	-	-	-	T	140590839	C	T	140590839	3	4	431	1	0	0	0	0	1	0	0	0	11610	623	22	4	2362	4	PCDHB12	5	140590839	Missense_Mutation	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	109229	140590839	40324421	15	42097										
NDST1	0	genome.wustl.edu	37	chr5	149918871	149918872	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cggctccagtgagctggacaINSagatcatcaacgggggcgag							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	149918871	149918872	-	C	INS	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	frame_shift_ins	c.1519_1520	p.K507fs	1.000:1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	158	0	0	221	105	32.21	-	-	-	C	149918872	-	C	149918871	7	5	431	1	0	1	1	0	0	0	0	0	10327	131	5	0	1541	0	NDST1	5	149918871	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	9328032	149918871	30996389	16	42098										
TCP11	0	genome.wustl.edu	37	chr6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggagccgctcttgtcttcctINSgggggggtcctgaggtttcg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	32	0	0	29	5	14.71	-	-	-	G	35108560	-	G	35108559	7	5	431	1	0	1	1	0	0	0	0	0	15808	1580	55	0	1512	0	TCP11	6	35108559	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		35108559	136006508	17	42099										
SIM1	0	genome.wustl.edu	37	chr6	100895183	100895183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tgacgatacagtgtggcctgGaggagcgactgttgtgcacg	16	8	0	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	6	100895183	100895183	G	A	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.959	p.S320F	1.000	pfam_PAS_fold_3,smart_PAC	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	121	0	0	18	54	75	-	-	-	A	100895183	G	A	100895183	3	1	431	1	0	0	0	0	1	0	0	0	14412	1174	41	2	1357	2	SIM1	6	100895183	Missense_Mutation	SNP	G	TCGA-B6-A0IA-01A-11W-A050-09	65786624	100895183	70219884	18	42100										
LHFPL3	0	genome.wustl.edu	37	chr7	103969504	103969504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	gggagctgacctgcaggggcAgcttcacggacttctccacg	14	13	2	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	7	103969504	103969504	A	G	SNP	LHFPL3	ENST00000535008	human	ensembl	69_37n	1	known	missense	c.277	p.S93G	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL3	HGNC	ENSG00000187416	37	0	0	34	29	46.03	-	-	-	G	103969504	A	G	103969504	3	3	431	1	0	0	0	0	1	0	0	0	8821	188	7	5	279	5	LHFPL3	7	103969504	Missense_Mutation	SNP	A	TCGA-B6-A0IA-01A-11W-A050-09		103969504	55169159	19	42101										
CREB3L2	0	genome.wustl.edu	37	chr7	137613095	137613096	+	In_Frame_Ins	INS	-	-	CCA													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cgttctgggaaaactcatccINSagaagttctgagaagtgcta							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	7	137613095	137613096	-	CCA	INS	CREB3L2	ENST00000330387	human	ensembl	69_37n	-1	known	in_frame_ins	c.120_119	p.41in_frame_insG	1.000:1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158	141	0	0	153	19	11.05	-	-	-	CCA	137613096	-	CCA	137613095	7	5	431	1	0	1	1	0	0	0	0	0	3887	581	21	0	1486	0	CREB3L2	7	137613095	In_Frame_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	33643591	137613095	21525568	20	42102	342	2								
CREB3L2	0	genome.wustl.edu	37	chr7	137613100	137613101	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tgggaaaactcatccagaagINSttctgagaagtgctacaaga							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	7	137613100	137613101	-	C	INS	CREB3L2	ENST00000330387	human	ensembl	69_37n	-1	known	frame_shift_ins	c.115_114	p.L38fs	1.000:1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158	134	0	0	143	19	11.73	-	-	-	C	137613101	-	C	137613100	7	5	431	1	0	1	1	0	0	0	0	0	3887	1029	36	0	1491	0	CREB3L2	7	137613100	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	5	137613100	21525563	21	42103	342	2								
RBM33	0	genome.wustl.edu	37	chr7	155530271	155530271	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cctggacctgttcccaacagTttcagccagcccccacgact							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	7	155530271	155530271	T	-	DEL	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	frame_shift_del	c.1308	p.F437fs	0.072	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	155	0	0	199	197	49.62	-	-	-	-	155530271	T	-	155530271	7	5	431	1	0	1	0	1	0	0	0	0	13213	1722	60	0	1346	0	RBM33	7	155530271	Frame_Shift_Del	DEL	T	TCGA-B6-A0IA-01A-11W-A050-09	17917171	155530271	3608392	22	42104	343	2								
RBM33	0	genome.wustl.edu	37	chr7	155530280	155530281	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ttcccaacagtttcagccagINScccccacgactccctctcca							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	7	155530280	155530281	-	T	INS	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	frame_shift_ins	c.1317_1318	p.P439fs	1.000:1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	158	0	0	216	203	48.45	-	-	-	T	155530281	-	T	155530280	7	5	431	1	0	1	1	0	0	0	0	0	13213	962	34	0	1355	0	RBM33	7	155530280	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	9	155530280	3608383	23	42105	343	2								
CNGB3	0	genome.wustl.edu	37	chr8	87623885	87623885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	agcaacatgtcataaatcatCtgtgtatcacaaccctatat	4	10	4	0			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	87623885	87623885	C	T	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	silent	c.1593	p.Q531	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	178	0	0	200	49	19.68	-	-	-	T	87623885	C	T	87623885	2	4	431	1	0	0	0	0	0	0	0	1	3631	912	32	2		2	CNGB3	8	87623885	Silent	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09		87623885	58740137	24	42106										
LRP12	0	genome.wustl.edu	37	chr8	105509765	105509765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	agaaacaactgtaagaggtgCatgagaatcaaaagctgtca	10	6	2	3			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	105509765	105509765	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.958	p.A320T	0.998	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	60	0	0	70	18	20.45	-	-	-	T	105509765	C	T	105509765	3	4	431	1	0	0	0	0	1	0	0	0	9020	710	25	4	1576	4	LRP12	8	105509765	Missense_Mutation	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	17885880	105509765	40854257	25	42107										
DENND3	0	genome.wustl.edu	37	chr8	142188203	142188204	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	caggcgctgaccaacgtcttINSgctgatggacgccgtcgtgg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	142188203	142188204	-	A	INS	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	frame_shift_ins	c.2504_2505	p.L836fs	0.989:0.991	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	46	0	0	83	38	31.4	-	-	-	A	142188204	-	A	142188203	7	5	431	1	0	1	1	0	0	0	0	0	4468	1821	63	0	2562	0	DENND3	8	142188203	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	36678438	142188203	4175819	26	42108										
ABO	0	genome.wustl.edu	37	chr9	136131313	136131314	+	RNA	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tgcaccgaccccccgaagaaINScccccccaggtagtagaaat							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	9	136131313	136131314	-	C	INS	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.116:0.001	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	18	0	0	36	4	10	-	-	-	C	136131314	-	C	136131313	6	5	431	0	1	1	1	0	0	0	0	0	97	43	2	0		0	ABO	9	136131313	RNA	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		136131313	5082118	27	42109										
HKDC1	0	genome.wustl.edu	37	chr10	71007279	71007280	+	Frame_Shift_Del	DEL	GA	GA	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ccatcctgacacgcctccggGagaacaagaaggtggaacgg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	10	71007279	71007280	GA	-	DEL	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	frame_shift_del	c.1195_1196	p.N400fs	1.000:1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	55	0	0	61	46	42.99	-	-	-	-	71007280	GA	-	71007279	7	5	431	1	0	1	0	1	0	0	0	0	7244	1175	41	0	1229	0	HKDC1	10	71007279	Frame_Shift_Del	DEL	GA	TCGA-B6-A0IA-01A-11W-A050-09		71007279	64527468	28	42110										
LDB3	0	genome.wustl.edu	37	chr10	88441388	88441388	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ccagcctgagggccaagaccAgcccagagggggcccgggac							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	10	88441388	88441388	A	-	DEL	LDB3	ENST00000429277	human	ensembl	69_37n	1	known	frame_shift_del	c.517	p.S173fs	0.008	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367	16	0	0	7	4	36.36	-	-	-	-	88441388	A	-	88441388	7	5	431	1	0	1	0	1	0	0	0	0	8751	188	7	0	531	0	LDB3	10	88441388	Frame_Shift_Del	DEL	A	TCGA-B6-A0IA-01A-11W-A050-09	17434109	88441388	47093359	29	42111										
LDHC	0	genome.wustl.edu	37	chr11	18456442	18456442	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	gccatggttggattattggaGaacatggtgattctagtggt	14	4	1	2			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	18456442	18456442	G	A	SNP	LDHC	ENST00000280704	human	ensembl	69_37n	1	known	missense	c.574	p.E192K	1.000	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHC	HGNC	ENSG00000166796	192	0	0	356	45	11.19	-	-	-	A	18456442	G	A	18456442	3	1	431	1	0	0	0	0	1	0	0	0	8756	943	33	2	588	2	LDHC	11	18456442	Missense_Mutation	SNP	G	TCGA-B6-A0IA-01A-11W-A050-09		18456442	116550074	30	42112										
CRY2	0	genome.wustl.edu	37	chr11	45891749	45891749	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cacggaccccagtggggactAcatcaggtgaggatacagac							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	45891749	45891749	A	-	DEL	CRY2	ENST00000443527	human	ensembl	69_37n	1	known	frame_shift_del	c.1403	p.Y468fs	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	47	0	0	77	100	55.87	-	-	-	-	45891749	A	-	45891749	7	5	431	1	0	1	0	1	0	0	0	0	3934	391	14	0	1469	0	CRY2	11	45891749	Frame_Shift_Del	DEL	A	TCGA-B6-A0IA-01A-11W-A050-09	27435307	45891749	89114767	31	42113										
YIF1A	0	genome.wustl.edu	37	chr11	66052222	66052223	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cggggccccccatgctgtcgINSgggcccagggctgctgtccg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	66052222	66052223	-	T	INS	YIF1A	ENST00000376901	human	ensembl	69_37n	-1	known	frame_shift_ins	c.768_767	p.D257fs	0.029:0.140	pfam_Hrf1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851	9	0	0	16	14	46.67	-	-	-	T	66052223	-	T	66052222	7	5	431	1	0	1	1	0	0	0	0	0	17572	1103	39	0	117	0	YIF1A	11	66052222	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	20160473	66052222	68954294	32	42114										
DPAGT1	0	genome.wustl.edu	37	chr11	118967812	118967813	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggagtaagaatcacgcagaaINSagggagacacggaggtataa							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	118967812	118967813	-	G	INS	DPAGT1	ENST00000432443	human	ensembl	69_37n	-1	known	frame_shift_ins	c.880_879	p.F293fs	0.002:0.000	NULL	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269	107	0	0	215	99	31.53	-	-	-	G	118967813	-	G	118967812	7	5	431	1	0	1	1	0	0	0	0	0	4745	29	1	0		0	DPAGT1	11	118967812	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	52915590	118967812	16038704	33	42115										
CACNA1C	0	genome.wustl.edu	37	chr12	2676748	2676748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ctgccagacacggcaaacaaGgccctgctggccctgttcac	10	16	1	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	12	2676748	2676748	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.1683	p.K561	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	51	0	0	29	18	38.3	-	-	-	A	2676748	G	A	2676748	2	1	431	1	0	0	0	0	0	0	0	1	2565	991	35	4		4	CACNA1C	12	2676748	Silent	SNP	G	TCGA-B6-A0IA-01A-11W-A050-09		2676748	131175147	34	42116										
PRMT8	0	genome.wustl.edu	37	chr12	3649779	3649780	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tcttcccctcaggtgaacagINSccccccctcccagccccccc							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	12	3649779	3649780	-	C	INS	PRMT8	ENST00000382622	human	ensembl	69_37n	1	known	frame_shift_ins	c.83_84	p.S31fs	0.892:0.358	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218	37	0	0	39	5	11.36	-	-	-	C	3649780	-	C	3649779	7	5	431	1	0	1	1	0	0	0	0	0	12623	971	34	0	89	0	PRMT8	12	3649779	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	973031	3649779	130202116	35	42117										
WSCD2	0	genome.wustl.edu	37	chr12	108603963	108603963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cggccacaagatccaggcgaCgaacgtgagcgaggcagagt	15	11	0	3			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	12	108603963	108603963	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.563	p.T188M	0.085	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	33	0	0	24	27	52.94	-	-	-	T	108603963	C	T	108603963	3	4	431	1	0	0	0	0	1	0	0	0	17504	536	19	1	573	1	WSCD2	12	108603963	Missense_Mutation	SNP	C	TCGA-B6-A0IA-01A-11W-A050-09	104954184	108603963	25247932	36	42118										
CDX2	0	genome.wustl.edu	37	chr13	28543039	28543040	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	cgccgtagtccgggtactgcINSggggggctgacgaagttctg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	13	28543039	28543040	-	G	INS	CDX2	ENST00000381020	human	ensembl	69_37n	-1	known	frame_shift_ins	c.105_104	p.Q36fs	1.000:1.000	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX2	HGNC	ENSG00000165556	22	0	0	4	2	33.33	-	-	-	G	28543040	-	G	28543039	7	5	431	1	0	1	1	0	0	0	0	0	3212	755	27	0	848	0	CDX2	13	28543039	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		28543039	86626839	37	42119										
FARP1	0	genome.wustl.edu	37	chr13	99092236	99092237	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	tgaggagagcgaagacgagtINSggggggtgccccactgcctg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	13	99092236	99092237	-	G	INS	FARP1	ENST00000376586	human	ensembl	69_37n	1	known	frame_shift_ins	c.2548_2549	p.V852fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP1	HGNC	ENSG00000152767	46	0	0	26	3	10.34	-	-	-	G	99092237	-	G	99092236	7	5	431	1	0	1	1	0	0	0	0	0	5722	1696	59	0	2760	0	FARP1	13	99092236	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	70549197	99092236	16077642	38	42120										
RYR3	0	genome.wustl.edu	37	chr15	34134090	34134090	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	aagatggagagaaggaagacAaagacaaagaagaggagcaa							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	15	34134090	34134090	A	-	DEL	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	frame_shift_del	c.13063	p.D4356fs	0.679	pfam_Ryanrecept_TM4-6,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	318	0	0	439	1425	76.04	-	-	-	-	34134090	A	-	34134090	7	5	431	1	0	1	0	1	0	0	0	0	13856	131	5	0	13425	0	RYR3	15	34134090	Frame_Shift_Del	DEL	A	TCGA-B6-A0IA-01A-11W-A050-09		34134090	68397302	39	42121										
ZWILCH	0	genome.wustl.edu	37	chr15	66821838	66821838	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	acttgttttccaaggtgtgaTttcataccaagacttggtga	9	7	1	3			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	15	66821838	66821838	T	A	SNP	ZWILCH	ENST00000307897	human	ensembl	69_37n	1	known	missense	c.1082	p.I361N	0.033	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442	91	0	0	74	63	45.99	-	-	-	A	66821838	T	A	66821838	3	1	431	1	0	0	0	0	1	0	0	0	18339	1493	52	5	1128	5	ZWILCH	15	66821838	Missense_Mutation	SNP	T	TCGA-B6-A0IA-01A-11W-A050-09	32687748	66821838	35709554	40	42122										
MAN2C1	0	genome.wustl.edu	37	chr15	75654699	75654700	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ttaccatctccacccaggtgINSccccccacaggcacaaactg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	15	75654699	75654700	-	C	INS	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	frame_shift_ins	c.993_992	p.T332fs	1.000:1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	25	0	0	17	2	10.53	-	-	-	C	75654700	-	C	75654699	7	5	431	1	0	1	1	0	0	0	0	0	9289	1306	46	0	2205	0	MAN2C1	15	75654699	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09	8832861	75654699	26876693	41	42123										
VAC14	0	genome.wustl.edu	37	chr16	70834788	70834789	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggcgtgagcggcgcgaaatcINScttctcggggttcatggtgg							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	16	70834788	70834789	-	A	INS	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	frame_shift_ins	c.16_15	p.D5fs	1.000:1.000	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	22	0	0	19	38	66.67	-	-	-	A	70834789	-	A	70834788	7	5	431	1	0	1	1	0	0	0	0	0	17208	855	30	0	2408	0	VAC14	16	70834788	Frame_Shift_Ins	INS	-	TCGA-B6-A0IA-01A-11W-A050-09		70834788	19519965	42	42124										
MYO5B	0	genome.wustl.edu	37	chr18	47429203	47429203	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	ggccttgtgctccatgaggaCctggcgggaaacaaggatac							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	18	47429203	47429203	C	-	DEL	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	frame_shift_del	c.2572	p.V858fs	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	10	0	0	9	4	30.77	-	-	-	-	47429203	C	-	47429203	7	5	431	1	0	1	0	1	0	0	0	0	10151	521	18	0	3054	0	MYO5B	18	47429203	Frame_Shift_Del	DEL	C	TCGA-B6-A0IA-01A-11W-A050-09		47429203	30648045	43	42125										
C20orf79	0	genome.wustl.edu	37	chr20	18794881	18794881	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	caaagtgagtggcaaggttcTgcttagctggaagctggaaa	14	6	1	1			TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	20	18794881	18794881	T	C	SNP	C20orf79	ENST00000377428	human	ensembl	69_37n	1	known	missense	c.422	p.L141P	1.000	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	-	no_errors	C20orf79	HGNC	ENSG00000132631	75	0	0	52	41	44.09	-	-	-	C	18794881	T	C	18794881	3	2	431	1	0	0	0	0	1	0	0	0	2139	1580	55	5	424	5	C20orf79	20	18794881	Missense_Mutation	SNP	T	TCGA-B6-A0IA-01A-11W-A050-09		18794881	44230639	44	42126										
MAGEB2	0	genome.wustl.edu	37	chrX	30237390	30237390	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.541036196417295	1.81422924901186	0	1.99565217391304	0.1	0.5224358974359	0	gaattcctgaatatgttgggAgtctatgatggagaggagca							TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	X	30237390	30237390	A	-	DEL	MAGEB2	ENST00000378988	human	ensembl	69_37n	1	known	frame_shift_del	c.693	p.V232fs	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399	125	0	0	147	68	31.63	-	-	-	-	30237390	A	-	30237390	7	5	431	1	0	1	0	1	0	0	0	0	9247	291	11	0	695	0	MAGEB2	23	30237390	Frame_Shift_Del	DEL	A	TCGA-B6-A0IA-01A-11W-A050-09		30237390	125033170	45	42127										
PER3	0	genome.wustl.edu	37	chr1	7844972	7844972	+	Frame_Shift_Del	DEL	G	G	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agctcctggccccgggagacGgggggctaaggacgaggccc							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	7844972	7844972	G	-	DEL	PER3	ENST00000361923	human	ensembl	69_37n	1	known	frame_shift_del	c.35	p.A14fs	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	23	0	0	2	6	60	-	-	-	-	7844972	G	-	7844972	7	5	432	1	0	1	0	1	0	0	0	0	11804	1116	39	0	37	0	PER3	1	7844972	Frame_Shift_Del	DEL	G	TCGA-B6-A0IB-01A-11W-A050-09		7844972	241405649	1	42128										
ATP1A1	0	genome.wustl.edu	37	chr1	116936238	116936238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agaaaggatcctagaccgttGcagctctatcctcctccacg	8	14	1	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	116936238	116936238	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.1553	p.C518Y	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	290	0	0	228	86	27.39	-	-	-	A	116936238	G	A	116936238	3	1	432	1	0	0	0	0	1	0	0	0	1132	1319	46	4	1615	4	ATP1A1	1	116936238	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	109091266	116936238	132314383	2	42129										
ENSA	0	genome.wustl.edu	37	chr1	150600017	150600017	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gcttgggtatttggcctttaGctttgcctcttcagctctct	9	11	3	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	150600017	150600017	G	C	SNP	ENSA	ENST00000369009	human	ensembl	69_37n	-1	known	missense	c.109	p.L37V	1.000	NULL	pfam_Endosulphine	-	no_errors	ENSA	HGNC	ENSG00000143420	46	0	0	72	44	37.93	-	-	-	C	150600017	G	C	150600017	3	2	432	1	0	0	0	0	1	0	0	0	5173	962	34	4	459	4	ENSA	1	150600017	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	33663779	150600017	98650604	3	42130										
NFASC	0	genome.wustl.edu	37	chr1	204938069	204938069	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tttctgcctggcctccaacaAgatgggcagcatccggcaca	10	14	1	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	204938069	204938069	A	G	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.962	p.K321R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	283	0	0	253	29	10.28	-	-	-	G	204938069	A	G	204938069	3	3	432	1	0	0	0	0	1	0	0	0	10431	72	3	5	1047	5	NFASC	1	204938069	Missense_Mutation	SNP	A	TCGA-B6-A0IB-01A-11W-A050-09	54338052	204938069	44312552	4	42131										
PROX1	0	genome.wustl.edu	37	chr1	214170689	214170689	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ctgattcggaaaatgatgaaGatggtaacctgtctgaagac	11	6	1	6			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	214170689	214170689	G	T	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.811	p.D271Y	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	109	0	0	151	30	16.57	-	-	-	T	214170689	G	T	214170689	3	4	432	1	0	0	0	0	1	0	0	0	12641	942	33	2	813	2	PROX1	1	214170689	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	9232620	214170689	35079932	5	42132										
CDC42BPA	0	genome.wustl.edu	37	chr1	227182616	227182616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cggggagggcatgggctgccGcttggcactgtagcttcctc	16	12	0	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	227182616	227182616	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.5122	p.R1708W	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	156	0	0	134	173	55.99	-	-	-	A	227182616	G	A	227182616	3	1	432	1	0	0	0	0	1	0	0	0	3101	1086	38	1	231	1	CDC42BPA	1	227182616	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	13011927	227182616	22068005	6	42133										
ZNF238	0	genome.wustl.edu	37	chr1	244218061	244218061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	atctggctcccctgagggagGactcggtcttgagggagctg	16	10	2	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	1	244218061	244218061	G	T	SNP	ZNF238	ENST00000358704	human	ensembl	69_37n	1	known	missense	c.985	p.D329Y	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF238	HGNC	ENSG00000179456	129	0	0	175	38	17.84	-	-	-	T	244218061	G	T	244218061	3	4	432	1	0	0	0	0	1	0	0	0	17886	1174	41	2	991	2	ZNF238	1	244218061	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	17035445	244218061	5032560	7	42134										
YIPF4	0	genome.wustl.edu	37	chr2	32515694	32515694	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gatgatgatcctgaagataaCaagccactcttgtatgtaaa	8	7	1	4			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	2	32515694	32515694	C	A	SNP	YIPF4	ENST00000238831	human	ensembl	69_37n	1	known	missense	c.222	p.N74K	0.999	NULL	pfam_Yip1	-	no_errors	YIPF4	HGNC	ENSG00000119820	28	0	0	11	10	47.62	-	-	-	A	32515694	C	A	32515694	3	1	432	1	0	0	0	0	1	0	0	0	17577	477	17	4	228	4	YIPF4	2	32515694	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		32515694	210683679	8	42135										
PCYOX1	0	genome.wustl.edu	37	chr2	70503936	70503936	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cgttcagacttctatgacatCgtcttggtggccactccgtt	9	12	3	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	2	70503936	70503936	C	T	SNP	PCYOX1	ENST00000433351	human	ensembl	69_37n	1	known	silent	c.930	p.I310	0.516	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005	43	0	0	40	5	11.11	-	-	-	T	70503936	C	T	70503936	2	4	432	1	0	0	0	0	0	0	0	1	11681	874	31	1		1	PCYOX1	2	70503936	Silent	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	37988242	70503936	172695437	9	42136										
DPP4	0	genome.wustl.edu	37	chr2	162875265	162875265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	atctcagctgataatacttcGcctctttactgaatgacaca	5	11	2	3			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	2	162875265	162875265	G	A	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.1394	p.A465V	0.877	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	163	0	0	117	16	12.03	-	-	-	A	162875265	G	A	162875265	3	1	432	1	0	0	0	0	1	0	0	0	4764	1087	38	1	950	1	DPP4	2	162875265	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	92371329	162875265	80324108	10	42137										
HIBCH	0	genome.wustl.edu	37	chr2	191069855	191069855	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ctgtcacctcaaaatttcaaAtcactgcttcccaaagactt	3	13	4	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	2	191069855	191069855	A	C	SNP	HIBCH	ENST00000359678	human	ensembl	69_37n	-1	known	missense	c.1149	p.D383E	1.000	NULL	pfam_Crotonase_core	-	no_errors	HIBCH	HGNC	ENSG00000198130	265	0	0	179	63	26.03	-	-	-	C	191069855	A	C	191069855	3	2	432	1	0	0	0	0	1	0	0	0	7151	98	4	5	15	5	HIBCH	2	191069855	Missense_Mutation	SNP	A	TCGA-B6-A0IB-01A-11W-A050-09	28194590	191069855	52129518	11	42138										
UBA7	0	genome.wustl.edu	37	chr3	49847490	49847490	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	catcctcagaagctgcagctGaggcaggggctctgtaggcc	14	12	2	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	3	49847490	49847490	G	A	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.1760	p.S587L	0.000	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	71	0	0	13	10	43.48	-	-	-	A	49847490	G	A	49847490	3	1	432	1	0	0	0	0	1	0	0	0	16930	1294	45	2	1322	2	UBA7	3	49847490	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09		49847490	148174940	12	42139										
GP5	0	genome.wustl.edu	37	chr3	194117824	194117824	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ggcagggtctccagctggttGtggtcgagctggacgctctc	16	11	2	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	3	194117824	194117824	G	A	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	silent	c.1188	p.H396	0.588	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	17	0	0	14	4	22.22	-	-	-	A	194117824	G	A	194117824	2	1	432	1	0	0	0	0	0	0	0	1	6633	1368	48	4		4	GP5	3	194117824	Silent	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	144270334	194117824	3904606	13	42140										
MXD4	0	genome.wustl.edu	37	chr4	2252287	2252287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gggcctacgagagggcggggCggcccagccgccggcagtgg	21	13	0	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	4	2252287	2252287	C	T	SNP	MXD4	ENST00000337190	human	ensembl	69_37n	-1	known	missense	c.614	p.R205H	0.908	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD4	HGNC	ENSG00000123933	20	0	0	5	6	50	-	-	-	T	2252287	C	T	2252287	3	4	432	1	0	0	0	0	1	0	0	0	10073	768	27	1	19	1	MXD4	4	2252287	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		2252287	188901989	14	42141										
H2AFZ	0	genome.wustl.edu	37	chr4	100870877	100870877	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gtcttggcctttccggagtcCtttccagccttaccgccagc	9	16	1	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	4	100870877	100870877	C	G	SNP	H2AFZ	ENST00000296417	human	ensembl	69_37n	-1	known	missense	c.24	p.K8N	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFZ	HGNC	ENSG00000164032	72	0	0	25	14	35.9	-	-	-	G	100870877	C	G	100870877	3	3	432	1	0	0	0	0	1	0	0	0	6982	680	24	4	378	4	H2AFZ	4	100870877	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	98618590	100870877	90283399	15	42142										
FGG	0	genome.wustl.edu	37	chr4	155533328	155533328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tagacaggaaatctgcaatgCcacaggtagttggacaataa	10	7	1	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	4	155533328	155533328	C	T	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	missense	c.149	p.G50D	1.000	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	151	0	0	92	67	42.14	-	-	-	T	155533328	C	T	155533328	3	4	432	1	0	0	0	0	1	0	0	0	5916	739	26	4	1259	4	FGG	4	155533328	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	54662451	155533328	35620948	16	42143										
LRP2BP	0	genome.wustl.edu	37	chr4	186296782	186296782	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cttacagcgtctagagtggtCcccagcccatcatagtacat	8	13	2	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	4	186296782	186296782	C	T	SNP	LRP2BP	ENST00000362004	human	ensembl	69_37n	-1	known	silent	c.321	p.G107	0.997	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771	149	0	0	56	39	41.05	-	-	-	T	186296782	C	T	186296782	2	4	432	1	0	0	0	0	0	0	0	1	9023	842	30	2		2	LRP2BP	4	186296782	Silent	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	30763454	186296782	4857494	17	42144										
RAB3C	0	genome.wustl.edu	37	chr5	57913553	57913553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	atgttcaaattactcatcatCggcaatagcagtgtggggaa	10	7	3	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	5	57913553	57913553	C	G	SNP	RAB3C	ENST00000282878	human	ensembl	69_37n	1	known	missense	c.108	p.I36M	0.912	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932	73	0	0	61	20	24.69	-	-	-	G	57913553	C	G	57913553	3	3	432	1	0	0	0	0	1	0	0	0	13016	874	31	3	114	3	RAB3C	5	57913553	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		57913553	123001707	18	42145										
ANKRD32	0	genome.wustl.edu	37	chr5	94014648	94014648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	acttaggaagttatgtttctCtttcgtgtgatggtaagttt	10	4	1	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	5	94014648	94014648	C	G	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	1	known	missense	c.1963	p.L655V	0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	378	0	0	228	67	22.64	-	-	-	G	94014648	C	G	94014648	3	3	432	1	0	0	0	0	1	0	0	0	659	913	32	2	2017	2	ANKRD32	5	94014648	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	36101095	94014648	86900612	19	42146										
CFB	0	genome.wustl.edu	37	chr6	31911214	31911215	+	Frame_Shift_Ins	INS	-	-	G													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	caagagccaagagacctgccINSggggggccctcatctccgac							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	6	31911214	31911215	-	G	INS	CFB	ENST00000556679	human	ensembl	69_37n	1	known	frame_shift_ins	c.1018_1019	p.A342fs	1.000:0.996	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649	8	0	0	4	2	33.33	-	-	-	G	31911215	-	G	31911214	7	5	432	1	0	1	1	0	0	0	0	0	3307	643	23	0		0	CFB	6	31911214	Frame_Shift_Ins	INS	-	TCGA-B6-A0IB-01A-11W-A050-09		31911214	139203853	20	42147										
DNAH8	0	genome.wustl.edu	37	chr6	38863942	38863942	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	attttcttcgtgagatgccaGaaccaactggtgatgaacct	9	9	1	4			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	6	38863942	38863942	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.8230	p.E2744K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	134	0	0	212	33	13.47	-	-	-	A	38863942	G	A	38863942	3	1	432	1	0	0	0	0	1	0	0	0	4642	943	33	2	8452	2	DNAH8	6	38863942	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	6952728	38863942	132251125	21	42148										
PTK7	0	genome.wustl.edu	37	chr6	43107257	43107257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agcccactattaagtgggaaCgggcaggtgggtacagtgcc	15	9	0	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	6	43107257	43107257	C	T	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	missense	c.1612	p.R538W	0.988	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	196	0	0	122	49	28.65	-	-	-	T	43107257	C	T	43107257	3	4	432	1	0	0	0	0	1	0	0	0	12846	527	19	1	1650	1	PTK7	6	43107257	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	4243315	43107257	128007810	22	42149										
LMBRD1	0	genome.wustl.edu	37	chr6	70428924	70428924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ccaaacgttcataagcagcgCttctagtgccttttatcaga	7	11	3	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	6	70428924	70428924	C	T	SNP	LMBRD1	ENST00000370577	human	ensembl	69_37n	-1	known	missense	c.686	p.S229N	0.996	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216	115	0	0	141	23	14.02	-	-	-	T	70428924	C	T	70428924	3	4	432	1	0	0	0	0	1	0	0	0	8898	797	28	4	972	4	LMBRD1	6	70428924	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	27321667	70428924	100686143	23	42150										
ABCA13	0	genome.wustl.edu	37	chr7	48567933	48567933	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ggacatgctatcatcaggacTcccatggggtaagatacaga	11	9	2	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	7	48567933	48567933	T	A	SNP	ABCA13	ENST00000453246	human	ensembl	69_37n	1	known	missense	c.3142	p.S1048T	0.166	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA13	HGNC	ENSG00000179869	217	0	0	315	36	10.23	-	-	-	A	48567933	T	A	48567933	3	1	432	1	0	0	0	0	1	0	0	0	31	1538	54	5	14393	5	ABCA13	7	48567933	Missense_Mutation	SNP	T	TCGA-B6-A0IB-01A-11W-A050-09		48567933	110570730	24	42151										
ABCB1	0	genome.wustl.edu	37	chr7	87175263	87175263	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tccacaatgactccatcatcGaaaccagcgatgacgtcagc	7	14	2	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	7	87175263	87175263	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.1803	p.F601	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	136	0	0	174	32	15.53	-	-	-	A	87175263	G	A	87175263	2	1	432	1	0	0	0	0	0	0	0	1	40	1049	37	1		1	ABCB1	7	87175263	Silent	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	38607330	87175263	71963400	25	42152										
PLOD3	0	genome.wustl.edu	37	chr7	100853849	100853849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ttacagaaggccatgtccggGtctgtgtcactgcccgagaa	12	11	2	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	7	100853849	100853849	G	A	SNP	PLOD3	ENST00000454310	human	ensembl	69_37n	-1	novel	missense	c.188	p.T63I	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	120	0	0	147	41	21.58	-	-	-	A	100853849	G	A	100853849	3	1	432	1	0	0	0	0	1	0	0	0	12177	1252	44	4	780	4	PLOD3	7	100853849	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	13678586	100853849	58284814	26	42153										
ATG9B	0	genome.wustl.edu	37	chr7	150718275	150718276	+	RNA	INS	-	-	G													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	acacagccacccagctcaccINSggggggatgtgcagggcctc							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	7	150718275	150718276	-	G	INS	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	50	0	0	24	3	11.11	-	-	-	G	150718276	-	G	150718275	6	5	432	0	1	1	1	0	0	0	0	0	1107	666	23	0		0	ATG9B	7	150718275	RNA	INS	-	TCGA-B6-A0IB-01A-11W-A050-09	49864426	150718275	8420388	27	42154										
OR51Q1	0	genome.wustl.edu	37	chr11	5443511	5443511	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ggatttgaggcctcccacatCtggatctccatccccgtctg	9	15	3	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	11	5443511	5443511	C	A	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	silent	c.81	p.I27	0.331	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	252	0	0	318	54	14.52	-	-	-	A	5443511	C	A	5443511	2	1	432	1	0	0	0	0	0	0	0	1	11177	903	32	2		2	OR51Q1	11	5443511	Silent	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		5443511	129563005	28	42155										
SLCO1A2	0	genome.wustl.edu	37	chr12	21445147	21445147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agccaaagaataaatgaaacTgctcatcgctgacaagatta	7	8	1	4			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	12	21445147	21445147	T	C	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	missense	c.1561	p.S521G	0.929	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	189	0	0	85	12	12.37	-	-	-	C	21445147	T	C	21445147	3	2	432	1	0	0	0	0	1	0	0	0	14811	1580	55	5	467	5	SLCO1A2	12	21445147	Missense_Mutation	SNP	T	TCGA-B6-A0IB-01A-11W-A050-09		21445147	112406748	29	42156										
LRP1	0	genome.wustl.edu	37	chr12	57600299	57600299	+	Frame_Shift_Del	DEL	C	C	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	atcgctgatgacaatgagatCcgcagcctgttccccggcca							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	12	57600299	57600299	C	-	DEL	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_del	c.11634	p.R3879fs	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	106	0	0	49	168	77.06	-	-	-	-	57600299	C	-	57600299	7	5	432	1	0	1	0	1	0	0	0	0	9017	845	30	0	11936	0	LRP1	12	57600299	Frame_Shift_Del	DEL	C	TCGA-B6-A0IB-01A-11W-A050-09	36155152	57600299	76251596	30	42157	344	3								
LRP1	0	genome.wustl.edu	37	chr12	57600303	57600303	+	Frame_Shift_Del	DEL	A	A	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ctgatgacaatgagatccgcAgcctgttccccggccacccc							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	12	57600303	57600303	A	-	DEL	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_del	c.11638	p.S3880fs	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	114	0	0	53	168	74.34	-	-	-	-	57600303	A	-	57600303	7	5	432	1	0	1	0	1	0	0	0	0	9017	188	7	0	11940	0	LRP1	12	57600303	Frame_Shift_Del	DEL	A	TCGA-B6-A0IB-01A-11W-A050-09	4	57600303	76251592	31	42158	344	3								
LRP1	0	genome.wustl.edu	37	chr12	57600307	57600307	+	Frame_Shift_Del	DEL	T	T	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tgacaatgagatccgcagccTgttccccggccacccccatt							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	12	57600307	57600307	T	-	DEL	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_del	c.11642	p.L3881fs	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	117	0	0	54	173	71.49	-	-	-	-	57600307	T	-	57600307	7	5	432	1	0	1	0	1	0	0	0	0	9017	1580	55	0	11944	0	LRP1	12	57600307	Frame_Shift_Del	DEL	T	TCGA-B6-A0IB-01A-11W-A050-09	4	57600307	76251588	32	42159	344	3								
TMTC3	0	genome.wustl.edu	37	chr12	88589349	88589349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cccacaaaacaacaaaagacAtcaaagaaattgagaagaaa	5	8	1	4			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	12	88589349	88589349	A	G	SNP	TMTC3	ENST00000266712	human	ensembl	69_37n	1	known	missense	c.2668	p.I890V	1.000	NULL	pfam_TPR_2,pfam_TPR-1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	79	0	0	26	46	63.89	-	-	-	G	88589349	A	G	88589349	3	3	432	1	0	0	0	0	1	0	0	0	16357	217	8	5	2718	5	TMTC3	12	88589349	Missense_Mutation	SNP	A	TCGA-B6-A0IB-01A-11W-A050-09	30989042	88589349	45262546	33	42160										
C14orf43	0	genome.wustl.edu	37	chr14	74205696	74205696	+	Frame_Shift_Del	DEL	T	T	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agcggcgggggaaggggatcTggacctgaggtagcgctggc							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	14	74205696	74205696	T	-	DEL	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	frame_shift_del	c.1016	p.Q339fs	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	34	0	0	30	6	14.63	-	-	-	-	74205696	T	-	74205696	7	5	432	1	0	1	0	1	0	0	0	0	1786	1580	55	0	2165	0	C14orf43	14	74205696	Frame_Shift_Del	DEL	T	TCGA-B6-A0IB-01A-11W-A050-09		74205696	33143844	34	42161										
SPTBN5	0	genome.wustl.edu	37	chr15	42144894	42144894	+	Frame_Shift_Del	DEL	G	G	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cagcagcttttctaagtcctGgtgtctgtgcagcagcaact							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	15	42144894	42144894	G	-	DEL	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	frame_shift_del	c.10387	p.Q3463fs	0.346	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	100	0	0	7	2	22.22	-	-	-	-	42144894	G	-	42144894	7	5	432	1	0	1	0	1	0	0	0	0	15213	1357	47	0	669	0	SPTBN5	15	42144894	Frame_Shift_Del	DEL	G	TCGA-B6-A0IB-01A-11W-A050-09		42144894	60386498	35	42162										
RSL1D1	0	genome.wustl.edu	37	chr16	11940376	11940376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	acctgcaagaaccacttttaGaaatgtttaagactgttcca	6	9	0	3			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	16	11940376	11940376	G	A	SNP	RSL1D1	ENST00000571133	human	ensembl	69_37n	-1	known	missense	c.617	p.S206F	1.000	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	-	no_errors	RSL1D1	HGNC	ENSG00000171490	97	0	0	139	27	16.17	-	-	-	A	11940376	G	A	11940376	3	1	432	1	0	0	0	0	1	0	0	0	13786	942	33	2	875	2	RSL1D1	16	11940376	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09		11940376	78414377	36	42163										
CETP	0	genome.wustl.edu	37	chr16	57009014	57009014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cttcctcatttcttttcaggCagtgctggagacctggggct	11	11	3	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	16	57009014	57009014	C	T	SNP	CETP	ENST00000200676	human	ensembl	69_37n	1	known	missense	c.932	p.A311V	0.006	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237	383	0	0	199	52	20.55	-	-	-	T	57009014	C	T	57009014	3	4	432	1	0	0	0	0	1	0	0	0	3306	724	25	4	970	4	CETP	16	57009014	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	45068638	57009014	33345739	37	42164										
ANKRD11	0	genome.wustl.edu	37	chr16	89347633	89347633	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	aggagcctggctggcgttttCcgaaagcccacttgaagcca	12	12	0	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	16	89347633	89347633	C	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	nonsense	c.5317	p.E1773*	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	95	0	0	34	9	20.93	-	-	-	A	89347633	C	A	89347633	4	1	432	1	0	0	0	0	0	1	0	0	639	864	30	2	2694	2	ANKRD11	16	89347633	Nonsense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	32338619	89347633	1007120	38	42165										
NLRP1	0	genome.wustl.edu	37	chr17	5418124	5418124	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gctgcccttctcccagagttCcataatgaggtgaggatggg	13	10	1	3			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	17	5418124	5418124	C	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	nonsense	c.4372	p.E1458*	0.025	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	290	0	0	109	35	24.14	-	-	-	A	5418124	C	A	5418124	4	1	432	1	0	0	0	0	0	1	0	0	10543	864	30	2	116	2	NLRP1	17	5418124	Nonsense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		5418124	75777086	39	42166										
MAP2K4	0	genome.wustl.edu	37	chr17	11958309	11958310	+	Splice_Site	INS	-	-	T													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gagttcaaaacccacacatgINStgagtattcttggtaatcaa							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	17	11958309	11958310	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site_ins	c.251+1_251+1	e3+1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	160	0	0	43	98	69.5	-	-	-	T	11958310	-	T	11958309	8	5	432	1	0	1	1	0	0	0	1	0	9310	1391	48	0	225	0	MAP2K4	17	11958309	Splice_Site	INS	-	TCGA-B6-A0IB-01A-11W-A050-09	6540185	11958309	69236901	40	42167										
NF1	0	genome.wustl.edu	37	chr17	29657384	29657384	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	aaatcgagggccagttactaGagacatcaggtttatgtatc	10	7	1	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	17	29657384	29657384	G	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.5680	p.E1894Q	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	173	0	0	128	32	20	-	-	-	C	29657384	G	C	29657384	3	2	432	1	0	0	0	0	1	0	0	0	10428	943	33	2	5895	2	NF1	17	29657384	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	17699075	29657384	51537826	41	42168										
SLC9A3R1	0	genome.wustl.edu	37	chr17	72764791	72764791	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	aaacgaactcttcagcaaccTctgagcgccctgctgccacc	7	17	3	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	17	72764791	72764791	T	C	SNP	SLC9A3R1	ENST00000262613	human	ensembl	69_37n	1	known	missense	c.1073	p.L358P	1.000	pfam_EBP50_C-term,pirsf_NaH_exchngr_reg_CF_NHE-RF	pfam_PDZ,pfam_EBP50_C-term,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	-	no_errors	SLC9A3R1	HGNC	ENSG00000109062	77	0	0	21	9	30	-	-	-	C	72764791	T	C	72764791	3	2	432	1	0	0	0	0	1	0	0	0	14803	1551	54	5	1095	5	SLC9A3R1	17	72764791	Missense_Mutation	SNP	T	TCGA-B6-A0IB-01A-11W-A050-09	43107407	72764791	8430419	42	42169										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41811615	41811615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gccaccctacaaccagggagGttacagccagggctacacag	11	14	0	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	19	41811615	41811615	G	C	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.2297	p.G766A	0.966	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	257	1	0.39	139	49	26.06	-	-	-	C	41811615	G	C	41811615	3	2	432	1	0	0	0	0	1	0	0	0	7325	1261	44	4	2351	4	HNRNPUL1	19	41811615	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09		41811615	17317368	43	42170										
PHLDB3	0	genome.wustl.edu	37	chr19	44006351	44006351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cagctgctgtccttgcaggcGccgcgccgcccctcgcaccc	11	21	0	0			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	19	44006351	44006351	G	A	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	missense	c.298	p.R100C	0.993	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	92	0	0	75	18	18.37	-	-	-	A	44006351	G	A	44006351	3	1	432	1	0	0	0	0	1	0	0	0	11927	1087	38	1	1680	1	PHLDB3	19	44006351	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	2194736	44006351	15122632	44	42171										
CEACAM18	0	genome.wustl.edu	37	chr19	51984819	51984819	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ccagacggcaagaccctcgtCatcctcagggtcagccgcta	10	16	3	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	19	51984819	51984819	C	G	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	silent	c.756	p.V252	0.002	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	96	0	0	144	22	13.25	-	-	-	G	51984819	C	G	51984819	2	3	432	1	0	0	0	0	0	0	0	1	3218	813	29	2		2	CEACAM18	19	51984819	Silent	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	7978468	51984819	7144164	45	42172										
POLR3F	0	genome.wustl.edu	37	chr20	18462391	18462391	+	Frame_Shift_Del	DEL	C	C	-													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	gatggacacatgaaactgtaCagggcagtcaatccaatcat							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	20	18462391	18462391	C	-	DEL	POLR3F	ENST00000377603	human	ensembl	69_37n	1	known	frame_shift_del	c.810	p.Y270fs	0.998	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	-	no_errors	POLR3F	HGNC	ENSG00000132664	99	0	0	113	53	30.64	-	-	-	-	18462391	C	-	18462391	7	5	432	1	0	1	0	1	0	0	0	0	12307	489	17	0	840	0	POLR3F	20	18462391	Frame_Shift_Del	DEL	C	TCGA-B6-A0IB-01A-11W-A050-09		18462391	44563129	46	42173										
COL20A1	0	genome.wustl.edu	37	chr20	61959802	61959803	+	Frame_Shift_Ins	INS	-	-	T													0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tggcacccgcagcaaggcccINStggttcctggagaatggggg							TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	20	61959802	61959803	-	T	INS	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	frame_shift_ins	c.3829_3830	p.V1278fs	0.001:0.004	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	58	0	0	7	2	22.22	-	-	-	T	61959803	-	T	61959802	7	5	432	1	0	1	1	0	0	0	0	0	3709	680	24	0	3805	0	COL20A1	20	61959802	Frame_Shift_Ins	INS	-	TCGA-B6-A0IB-01A-11W-A050-09	43497411	61959802	1065718	47	42174										
GAB4	0	genome.wustl.edu	37	chr22	17451008	17451008	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tcaacactgtatccactgtgCtgggcaagattttgcatggc	10	10	1	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	22	17451008	17451008	C	A	SNP	GAB4	ENST00000400588	human	ensembl	69_37n	-1	known	missense	c.762	p.Q254H	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568	144	0	0	105	20	16	-	-	-	A	17451008	C	A	17451008	3	1	432	1	0	0	0	0	1	0	0	0	6200	796	28	4	990	4	GAB4	22	17451008	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09		17451008	33853558	48	42175										
CACNG2	0	genome.wustl.edu	37	chr22	36983554	36983554	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	agcttcgtaatctgcatcctCtgggaagtgatcaatttgct	9	9	3	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	22	36983554	36983554	C	T	SNP	CACNG2	ENST00000300105	human	ensembl	69_37n	-1	known	missense	c.253	p.E85K	0.451	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g2su,prints_Claudin	-	no_errors	CACNG2	HGNC	ENSG00000166862	268	0	0	243	44	15.33	-	-	-	T	36983554	C	T	36983554	3	4	432	1	0	0	0	0	1	0	0	0	2582	922	32	2	730	2	CACNG2	22	36983554	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	19532546	36983554	14321012	49	42176										
BMP15	0	genome.wustl.edu	37	chrX	50654112	50654112	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	tgtggcaaggcctcacagagGtgagttgttatgcccccata	12	10	1	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	X	50654112	50654112	G	A	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	1	known	splice_site	c.328+1	e1+1	1.000	-	-	-	no_errors	BMP15	HGNC	ENSG00000130385	9	0	0	9	4	30.77	-	-	-	A	50654112	G	A	50654112	5	1	432	1	0	0	0	0	0	0	1	0	1463	1275	44	4	331	4	BMP15	23	50654112	Splice_Site	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09		50654112	104616448	50	42177										
GPRASP2	0	genome.wustl.edu	37	chrX	101971946	101971946	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	ttgactatcacacactgattGccaactatatgtccgggttt	7	10	1	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	X	101971946	101971946	G	T	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.2149	p.A717S	0.733	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	73	0	0	56	19	25.33	-	-	-	T	101971946	G	T	101971946	3	4	432	1	0	0	0	0	1	0	0	0	6774	1319	46	4	2151	4	GPRASP2	23	101971946	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	51317834	101971946	53298614	51	42178										
RGAG1	0	genome.wustl.edu	37	chrX	109694759	109694759	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	catgtcagatctagactctgGaataatgtcatcgcttttaa	7	8	4	2			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	X	109694759	109694759	G	T	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.914	p.G305V	0.009	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	304	0	0	210	37	14.98	-	-	-	T	109694759	G	T	109694759	3	4	432	1	0	0	0	0	1	0	0	0	13357	1174	41	2	916	2	RGAG1	23	109694759	Missense_Mutation	SNP	G	TCGA-B6-A0IB-01A-11W-A050-09	7722813	109694759	45575801	52	42179										
G6PD	0	genome.wustl.edu	37	chrX	153761880	153761880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137254901960784	7	0.326849932092404	1.69090413943355	2.79516806722689	1.30441176470588	1	1	0	cagtaggtggttctgcatcaCgtccctggggacggaagagg	16	9	2	1			TCGA-B6-A0IB-01A-11W-A050-09	TCGA-B6-A0IB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff80d5cd-7aed-499f-a472-153cc40f65de	0caeac20-293e-4c97-8074-3f9d78e5ef3e	X	153761880	153761880	C	T	SNP	G6PD	ENST00000369620	human	ensembl	69_37n	-1	known	missense	c.913	p.V305M	1.000	pfam_G6P_DH_C,pirsf_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211	124	0	0	59	15	20.27	-	-	-	T	153761880	C	T	153761880	3	4	432	1	0	0	0	0	1	0	0	0	6195	536	19	1	796	1	G6PD	23	153761880	Missense_Mutation	SNP	C	TCGA-B6-A0IB-01A-11W-A050-09	44067121	153761880	1508680	53	42180										
MFN2	0	genome.wustl.edu	37	chr1	12062055	12062055	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ccaggagtgcatctcccagtCtgcagtgaagaccaagtttg	11	11	2	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	12062055	12062055	C	A	SNP	MFN2	ENST00000235329	human	ensembl	69_37n	1	known	missense	c.1055	p.S352Y	1.000	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase	-	no_errors	MFN2	HGNC	ENSG00000116688	140	0	0	25	25	50	-	-	-	A	12062055	C	A	12062055	3	1	433	1	0	0	0	0	1	0	0	0	9595	913	32	2	1089	2	MFN2	1	12062055	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		12062055	237188566	1	42181										
ZFYVE9	0	genome.wustl.edu	37	chr1	52704506	52704509	+	Frame_Shift_Del	DEL	TATC	TATC	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tagacacaccagcagcaaatTatctatctaatggttgtgat							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	TATC	TATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	52704506	52704509	TATC	-	DEL	ZFYVE9	ENST00000287727	human	ensembl	69_37n	1	known	frame_shift_del	c.1417_1420	p.S475fs	0.923:0.916:0.906:0.903	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	110	0	0	73	42	36.21	-	-	-	-	52704509	TATC	-	52704506	7	5	433	1	0	1	0	1	0	0	0	0	17767	1754	61	0	1423	0	ZFYVE9	1	52704506	Frame_Shift_Del	DEL	TATC	TCGA-B6-A0IC-01A-11W-A050-09	40642451	52704506	196546115	2	42182										
PRPF3	0	genome.wustl.edu	37	chr1	150307447	150307447	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	aacgaaacctacaccactgaTcctggatgagcaagggcgca	10	12	0	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	150307447	150307447	T	C	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	missense	c.770	p.I257T	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	PRPF3	HGNC	ENSG00000117360	94	0	0	39	26	40	-	-	-	C	150307447	T	C	150307447	3	2	433	1	0	0	0	0	1	0	0	0	12646	1435	50	5	792	5	PRPF3	1	150307447	Missense_Mutation	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09	97602941	150307447	98943174	3	42183										
SMG5	0	genome.wustl.edu	37	chr1	156252453	156252454	+	Frame_Shift_Ins	INS	-	-	G													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ggctcgctgctctcccctgtINSgggggggccttggctcatgg							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	156252453	156252454	-	G	INS	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	frame_shift_ins	c.19_18	p.T6fs	0.004:0.011	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	33	0	0	26	4	13.33	-	-	-	G	156252454	-	G	156252453	7	5	433	1	0	1	1	0	0	0	0	0	14885	1696	59	0	3119	0	SMG5	1	156252453	Frame_Shift_Ins	INS	-	TCGA-B6-A0IC-01A-11W-A050-09	5945006	156252453	92998168	4	42184										
FCRL1	0	genome.wustl.edu	37	chr1	157767580	157767580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ctgaggaatgctgttgtctgCcatgcacagccactgattgt	11	10	1	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	157767580	157767580	C	T	SNP	FCRL1	ENST00000358292	human	ensembl	69_37n	-1	known	missense	c.1028	p.G343D	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL1	HGNC	ENSG00000163534	203	0	0	96	93	49.21	-	-	-	T	157767580	C	T	157767580	3	4	433	1	0	0	0	0	1	0	0	0	5840	739	26	4	146	4	FCRL1	1	157767580	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	1515127	157767580	91483041	5	42185										
CEP350	0	genome.wustl.edu	37	chr1	180047729	180047729	+	Frame_Shift_Del	DEL	G	G	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ctataggacaggagcagccaGggagtccagatcacagtata							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	180047729	180047729	G	-	DEL	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	frame_shift_del	c.5899	p.S1968fs	0.704	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	132	0	0	135	100	41.67	-	-	-	-	180047729	G	-	180047729	7	5	433	1	0	1	0	1	0	0	0	0	3283	1000	35	0	6009	0	CEP350	1	180047729	Frame_Shift_Del	DEL	G	TCGA-B6-A0IC-01A-11W-A050-09	22280149	180047729	69202892	6	42186										
LMOD1	0	genome.wustl.edu	37	chr1	201869751	201869751	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tctctagagaagcttttcttTaaaccacccctctttggctc	5	13	3	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	201869751	201869751	T	C	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	0.034	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	144	0	0	58	46	44.23	-	-	-	C	201869751	T	C	201869751	2	2	433	1	0	0	0	0	0	0	0	1	8912	1751	61	5		5	LMOD1	1	201869751	Silent	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09	21822022	201869751	47380870	7	42187										
ITPKB	0	genome.wustl.edu	37	chr1	226924456	226924456	+	Frame_Shift_Del	DEL	G	G	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	cagcccggccgggaagaggtGgcattcctttcttcacctgc							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	226924456	226924456	G	-	DEL	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	frame_shift_del	c.704	p.P235fs	0.014	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	14	0	0	4	2	33.33	-	-	-	-	226924456	G	-	226924456	7	5	433	1	0	1	0	1	0	0	0	0	7972	1348	47	0	2164	0	ITPKB	1	226924456	Frame_Shift_Del	DEL	G	TCGA-B6-A0IC-01A-11W-A050-09	25054705	226924456	22326165	8	42188										
OBSCN	0	genome.wustl.edu	37	chr1	228471278	228471278	+	Frame_Shift_Del	DEL	A	A	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gcacagctgtgttcacgtgcAagacggagcaccccgcggcc							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	228471278	228471278	A	-	DEL	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_del	c.8812	p.K2938fs	0.956	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	64	0	0	15	2	11.76	-	-	-	-	228471278	A	-	228471278	7	5	433	1	0	1	0	1	0	0	0	0	10885	131	5	0	8938	0	OBSCN	1	228471278	Frame_Shift_Del	DEL	A	TCGA-B6-A0IC-01A-11W-A050-09	1546822	228471278	20779343	9	42189										
TTL	0	genome.wustl.edu	37	chr2	113277954	113277954	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tgacttcatggtcgatgaggAgctgaaggtgtggctcattg	15	6	2	3			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	2	113277954	113277954	A	G	SNP	TTL	ENST00000233336	human	ensembl	69_37n	1	known	missense	c.971	p.E324G	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTL	HGNC	ENSG00000114999	187	0	0	80	88	52.38	-	-	-	G	113277954	A	G	113277954	3	3	433	1	0	0	0	0	1	0	0	0	16818	304	11	5	993	5	TTL	2	113277954	Missense_Mutation	SNP	A	TCGA-B6-A0IC-01A-11W-A050-09		113277954	129921419	10	42190										
SATB2	0	genome.wustl.edu	37	chr2	200137254	200137254	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	atgaataaagctttggaggaTccccagggcttctaaggaga	12	7	1	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	2	200137254	200137254	T	A	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.1882	p.I628F	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	103	0	0	69	69	49.64	-	-	-	A	200137254	T	A	200137254	3	1	433	1	0	0	0	0	1	0	0	0	13941	1435	50	5	323	5	SATB2	2	200137254	Missense_Mutation	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09	86859300	200137254	43062119	11	42191										
DNAJB3	0	genome.wustl.edu	37	chr2	234652187	234652188	+	RNA	INS	-	-	C													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ttccccagcagttcctctgaINScccccccaaaatattctcca							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	2	234652187	234652188	-	C	INS	DNAJB3	ENST00000449667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.050:0.014	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	62	0	0	31	5	13.89	-	-	-	C	234652188	-	C	234652187	6	5	433	0	1	1	1	0	0	0	0	0	4656	275	10	0		0	DNAJB3	2	234652187	RNA	INS	-	TCGA-B6-A0IC-01A-11W-A050-09	34514933	234652187	8547186	12	42192										
RNF123	0	genome.wustl.edu	37	chr3	49750025	49750025	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gagttctacctgagcgtggcCatcaacagctacagtgctct	10	12	3	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	3	49750025	49750025	C	A	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	silent	c.2610	p.A870	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	90	0	0	15	12	44.44	-	-	-	A	49750025	C	A	49750025	2	1	433	1	0	0	0	0	0	0	0	1	13519	581	21	4		4	RNF123	3	49750025	Silent	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		49750025	148272405	13	42193										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	83	0	0	101	72	41.62	-	-	-	A	178936091	G	A	178936091	3	1	433	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09	129186066	178936091	19086339	14	42194										
SLC10A6	0	genome.wustl.edu	37	chr4	87770240	87770240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ctgaactgttggcagggcagGctgagctgctggaacaattg	15	8	0	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	4	87770240	87770240	G	A	SNP	SLC10A6	ENST00000273905	human	ensembl	69_37n	-1	known	missense	c.29	p.A10V	0.991	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283	54	0	0	26	9	25.71	-	-	-	A	87770240	G	A	87770240	3	1	433	1	0	0	0	0	1	0	0	0	14467	1203	42	4	1128	4	SLC10A6	4	87770240	Missense_Mutation	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09		87770240	103384036	15	42195										
BDP1	0	genome.wustl.edu	37	chr5	70793174	70793174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	taaacccaatttgtcaagggCtgggaagaaatcagttcttt	9	7	3	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	5	70793174	70793174	C	T	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.1877	p.A626V	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	91	0	0	157	24	13.26	-	-	-	T	70793174	C	T	70793174	3	4	433	1	0	0	0	0	1	0	0	0	1399	797	28	4	1927	4	BDP1	5	70793174	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		70793174	110122086	16	42196										
ZNF354C	0	genome.wustl.edu	37	chr5	178503490	178503490	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gccgtgttcttcagccaggaCgagtggttgcacctggactc	13	12	2	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	5	178503490	178503490	C	T	SNP	ZNF354C	ENST00000315475	human	ensembl	69_37n	1	known	silent	c.72	p.D24	0.590	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932	262	0	0	270	82	23.3	-	-	-	T	178503490	C	T	178503490	2	4	433	1	0	0	0	0	0	0	0	1	17962	535	19	1		1	ZNF354C	5	178503490	Silent	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	107710316	178503490	2411770	17	42197										
MAP3K4	0	genome.wustl.edu	37	chr6	161470644	161470644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ggagtatgagggtgatgacaCagaaggagaattaaaggagt	16	2	0	5			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	6	161470644	161470644	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	missense	c.1340	p.T447I	0.039	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	172	0	0	164	46	21.9	-	-	-	T	161470644	C	T	161470644	3	4	433	1	0	0	0	0	1	0	0	0	9323	478	17	4	1350	4	MAP3K4	6	161470644	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		161470644	9644423	18	42198										
SDK1	0	genome.wustl.edu	37	chr7	4011199	4011199	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	atgacccccgggtttcactcCggtcagcacaatcagttaca	8	14	3	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	7	4011199	4011199	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.1816	p.R606C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	108	0	0	66	26	28.26	-	-	-	T	4011199	C	T	4011199	3	4	433	1	0	0	0	0	1	0	0	0	14056	666	23	1	1862	1	SDK1	7	4011199	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		4011199	155127464	19	42199										
CROT	0	genome.wustl.edu	37	chr7	86988539	86988539	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tagtgaaaccatttgcaaatCaagaagaatataagaaaact	6	5	1	4			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	7	86988539	86988539	C	G	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	missense	c.133	p.Q45E	0.999	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	79	0	0	67	91	57.59	-	-	-	G	86988539	C	G	86988539	3	3	433	1	0	0	0	0	1	0	0	0	3924	827	29	2	227	2	CROT	7	86988539	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	82977340	86988539	72150124	20	42200										
ALDH1A1	0	genome.wustl.edu	37	chr9	75540496	75540496	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	cagctcagtgcaggccctatCttccaaatgagcataaccaa	7	13	2	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	9	75540496	75540496	C	T	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	silent	c.537	p.K179	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	104	0	0	78	54	40.91	-	-	-	T	75540496	C	T	75540496	2	4	433	1	0	0	0	0	0	0	0	1	490	912	32	2		2	ALDH1A1	9	75540496	Silent	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		75540496	65672935	21	42201										
ZCCHC6	0	genome.wustl.edu	37	chr9	88961242	88961242	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gcctgtcaatgcagtctctcTtcagtctctcctcagcctgc	7	16	6	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	9	88961242	88961242	T	G	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.674	p.K225T	0.429	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	397	0	0	280	151	35.03	-	-	-	G	88961242	T	G	88961242	3	3	433	1	0	0	0	0	1	0	0	0	17688	1609	56	5	3913	5	ZCCHC6	9	88961242	Missense_Mutation	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09	13420746	88961242	52252189	22	42202										
PCDH15	0	genome.wustl.edu	37	chr10	55912885	55912885	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ctctgcaggaggagcattatCcgctgcttggaccgtgagtg	14	10	1	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	10	55912885	55912885	C	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.1759	p.D587Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	172	0	0	125	43	25.6	-	-	-	A	55912885	C	A	55912885	3	1	433	1	0	0	0	0	1	0	0	0	11584	855	30	2	5807	2	PCDH15	10	55912885	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		55912885	79621862	23	42203										
SLC5A12	0	genome.wustl.edu	37	chr11	26725447	26725447	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gttaagaagcccacaatcatGacaaccatctgaaatgcatc	6	11	2	3			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	11	26725447	26725447	G	A	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	silent	c.573	p.V191	0.994	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	189	0	0	112	43	27.74	-	-	-	A	26725447	G	A	26725447	2	1	433	1	0	0	0	0	0	0	0	1	14753	1277	45	2		2	SLC5A12	11	26725447	Silent	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09		26725447	108281069	24	42204										
A2M	0	genome.wustl.edu	37	chr12	9220358	9220359	+	Frame_Shift_Ins	INS	-	-	T													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tttaaagatacaaaaacacgINStgtcttctgtggagctctga							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	9220358	9220359	-	T	INS	A2M	ENST00000543436	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.502_501	p.R167fs	0.000:0.000	NULL	pfam_Macroglobln_a2,pfam_SV_autoAg	-	no_start_codon:pseudogene:no_stop_codon	A2M	HGNC	ENSG00000175899	37	0	0	15	15	50	-	-	-	T	9220359	-	T	9220358	7	5	433	1	0	1	1	0	0	0	0	0	4	1160	40	0		0	A2M	12	9220358	Frame_Shift_Ins	INS	-	TCGA-B6-A0IC-01A-11W-A050-09		9220358	124631537	25	42205										
DUSP16	0	genome.wustl.edu	37	chr12	12630859	12630860	+	Frame_Shift_Ins	INS	-	-	G													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tctttggccctgatgctccaINSgtctggttcttaatcttctt							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	12630859	12630860	-	G	INS	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	frame_shift_ins	c.906_905	p.G303fs	0.737:0.915	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	55	0	0	24	16	40	-	-	-	G	12630860	-	G	12630859	7	5	433	1	0	1	1	0	0	0	0	0	4851	175	7	0	1095	0	DUSP16	12	12630859	Frame_Shift_Ins	INS	-	TCGA-B6-A0IC-01A-11W-A050-09	3410501	12630859	121221036	26	42206										
KRT1	0	genome.wustl.edu	37	chr12	53070227	53070227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tgttcttggcatccttgaggGcattctcgccacgctgctct	10	13	3	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	53070227	53070227	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.1307	p.A436V	1.000	pfam_F,superfamily_Prefoldin,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	115	0	0	44	32	42.11	-	-	-	A	53070227	G	A	53070227	3	1	433	1	0	0	0	0	1	0	0	0	8500	1203	42	4	639	4	KRT1	12	53070227	Missense_Mutation	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09	40439368	53070227	80781668	27	42207										
WSCD2	0	genome.wustl.edu	37	chr12	108642028	108642028	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	acccctatactgcggacatgCagaagaccatctctgcctac	7	15	1	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	108642028	108642028	C	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.1666	p.Q556K	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	105	0	0	22	24	52.17	-	-	-	A	108642028	C	A	108642028	3	1	433	1	0	0	0	0	1	0	0	0	17504	711	25	4	1636	4	WSCD2	12	108642028	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	55571801	108642028	25209867	28	42208										
KL	0	genome.wustl.edu	37	chr13	33629465	33629465	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	acattcaagtaagtcagctgAcaaaaccaatcagcagtctc	6	11	4	1			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	13	33629465	33629465	A	T	SNP	KL	ENST00000426690	human	ensembl	69_37n	1	known	missense	c.691	p.T231S	0.249	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	65	0	0	35	13	26.53	-	-	-	T	33629465	A	T	33629465	3	4	433	1	0	0	0	0	1	0	0	0	8384	290	10	5		5	KL	13	33629465	Missense_Mutation	SNP	A	TCGA-B6-A0IC-01A-11W-A050-09		33629465	81540413	29	42209										
OLFM4	0	genome.wustl.edu	37	chr13	53624378	53624378	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	agtggtacagcagtttacaaCaacaacatgtacgtcaacat	7	9	1	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	13	53624378	53624378	C	A	SNP	OLFM4	ENST00000219022	human	ensembl	69_37n	1	known	missense	c.1005	p.N335K	0.006	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837	127	0	0	84	58	40.85	-	-	-	A	53624378	C	A	53624378	3	1	433	1	0	0	0	0	1	0	0	0	10928	477	17	4	1023	4	OLFM4	13	53624378	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	19994913	53624378	61545500	30	42210										
DNAH3	0	genome.wustl.edu	37	chr16	21115812	21115812	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	cttttaatcagatccatttcTgcctgatccctcttgtgaag	6	11	3	3			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	16	21115812	21115812	T	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.2346	p.A782	0.995	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	155	0	0	266	132	33.17	-	-	-	C	21115812	T	C	21115812	2	2	433	1	0	0	0	0	0	0	0	1	4639	1567	55	5		5	DNAH3	16	21115812	Silent	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09		21115812	69238941	31	42211										
EDC4	0	genome.wustl.edu	37	chr16	67917529	67917529	+	Frame_Shift_Del	DEL	C	C	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gtgtgaaactgtggacccagCccaggtttttgggcagccac							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	16	67917529	67917529	C	-	DEL	EDC4	ENST00000358933	human	ensembl	69_37n	1	known	frame_shift_del	c.3908	p.Q1304fs	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	65	0	0	18	2	10	-	-	-	-	67917529	C	-	67917529	7	5	433	1	0	1	0	1	0	0	0	0	4943	739	26	0	4018	0	EDC4	16	67917529	Frame_Shift_Del	DEL	C	TCGA-B6-A0IC-01A-11W-A050-09	46801717	67917529	22437224	32	42212										
SMCR8	0	genome.wustl.edu	37	chr17	18220579	18220579	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	aaatctgacagccaggcaagCctcacagtaccattgagccc	8	14	2	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	17	18220579	18220579	C	A	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	missense	c.1476	p.S492R	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	30	0	0	4	4	50	-	-	-	A	18220579	C	A	18220579	3	1	433	1	0	0	0	0	1	0	0	0	14881	738	26	4	1478	4	SMCR8	17	18220579	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		18220579	62974631	33	42213										
SLC13A2	0	genome.wustl.edu	37	chr17	26817851	26817851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	agctcgcaagccagcagcaaCgtcgaggagggcagcaacaa	13	12	0	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	17	26817851	26817851	C	T	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	silent	c.648	p.N216	0.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	175	0	0	29	21	42	-	-	-	T	26817851	C	T	26817851	2	4	433	1	0	0	0	0	0	0	0	1	14481	535	19	1		1	SLC13A2	17	26817851	Silent	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	8597272	26817851	54377359	34	42214										
TMC8	0	genome.wustl.edu	37	chr17	76128557	76128558	+	Frame_Shift_Ins	INS	-	-	C													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	ctgcccctggtctggctccgINScccccctgacccaggcccca							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	17	76128557	76128558	-	C	INS	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	frame_shift_ins	c.416_417	p.D142fs	0.060:0.060	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	20	0	0	4	2	33.33	-	-	-	C	76128558	-	C	76128557	7	5	433	1	0	1	1	0	0	0	0	0	16086	1087	38	0	426	0	TMC8	17	76128557	Frame_Shift_Ins	INS	-	TCGA-B6-A0IC-01A-11W-A050-09	49310706	76128557	5066653	35	42215										
ANO8	0	genome.wustl.edu	37	chr19	17436073	17436074	+	Frame_Shift_Del	DEL	CT	CT	-													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gagccctcggccctcgcctcCtctcggccaccagaatcatg							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	19	17436073	17436074	CT	-	DEL	ANO8	ENST00000159087	human	ensembl	69_37n	-1	known	frame_shift_del	c.2784_2783	p.E928fs	0.975:0.978	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	19	0	0	1	2	66.67	-	-	-	-	17436074	CT	-	17436073	7	5	433	1	0	1	0	1	0	0	0	0	702	680	24	0	922	0	ANO8	19	17436073	Frame_Shift_Del	DEL	CT	TCGA-B6-A0IC-01A-11W-A050-09		17436073	41692910	36	42216										
ARHGAP35	0	genome.wustl.edu	37	chr19	47492897	47492897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	actgcctgaccccctggtccCgtataacatgcagatcgact	8	15	0	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	19	47492897	47492897	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	missense	c.4001	p.P1334L	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	99	0	0	35	16	31.37	-	-	-	T	47492897	C	T	47492897	3	4	433	1	0	0	0	0	1	0	0	0	6846	652	23	1	4015	1	ARHGAP35	19	47492897	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09	30056824	47492897	11636086	37	42217										
DSCAM	0	genome.wustl.edu	37	chr21	41427655	41427655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	caaatagggcagcttaccaaTggtctccatcgtgtctctct	8	12	3	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	21	41427655	41427655	T	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.5032	p.I1678V	0.999	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	162	0	0	83	45	35.16	-	-	-	C	41427655	T	C	41427655	3	2	433	1	0	0	0	0	1	0	0	0	4803	1464	51	5	1026	5	DSCAM	21	41427655	Missense_Mutation	SNP	T	TCGA-B6-A0IC-01A-11W-A050-09		41427655	6702240	38	42218										
ZNF74	0	genome.wustl.edu	37	chr22	20759967	20759967	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	gggcagaaccaaggcccccgCgagactgtgtgcaggggaaa	16	11	0	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	22	20759967	20759967	C	G	SNP	ZNF74	ENST00000356671	human	ensembl	69_37n	1	known	missense	c.644	p.A215G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252	47	0	0	6	10	62.5	-	-	-	G	20759967	C	G	20759967	3	3	433	1	0	0	0	0	1	0	0	0	18221	768	27	3	662	3	ZNF74	22	20759967	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		20759967	30544599	39	42219										
FRMPD4	0	genome.wustl.edu	37	chrX	12734333	12734333	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	acggtggagatcacagacagCaccatgtgtccaaaagagca	11	10	1	3			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	12734333	12734333	C	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.1755	p.S585R	0.016	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	131	0	0	55	41	42.71	-	-	-	A	12734333	C	A	12734333	3	1	433	1	0	0	0	0	1	0	0	0	6108	709	25	4	1813	4	FRMPD4	23	12734333	Missense_Mutation	SNP	C	TCGA-B6-A0IC-01A-11W-A050-09		12734333	142536227	40	42220										
STARD8	0	genome.wustl.edu	37	chrX	67937329	67937329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	cccctcctcagccccacccaGggccaggagggtccccagga	11	20	1	0			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	67937329	67937329	G	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	missense	c.573	p.Q191H	0.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	74	0	0	11	14	56	-	-	-	T	67937329	G	T	67937329	3	4	433	1	0	0	0	0	1	0	0	0	15354	991	35	4	595	4	STARD8	23	67937329	Missense_Mutation	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09	55202996	67937329	87333231	41	42221										
NLGN3	0	genome.wustl.edu	37	chrX	70389734	70389735	+	Frame_Shift_Ins	INS	-	-	C													0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	accacgagtgtgaggccggtINScccccccatgacacgctgcg							TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	70389734	70389735	-	C	INS	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	frame_shift_ins	c.2334_2335	p.H780fs	0.004:0.347	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	148	1	0.67	73	10	12.05	-	-	-	C	70389735	-	C	70389734	7	5	433	1	0	1	1	0	0	0	0	0	10535	1654	58	0	2360	0	NLGN3	23	70389734	Frame_Shift_Ins	INS	-	TCGA-B6-A0IC-01A-11W-A050-09	2452405	70389734	84880826	42	42222										
NAA10	0	genome.wustl.edu	37	chrX	153197829	153197829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0930232558139535	4	0.527859463194209	1.64540816326531	2.87946428571429	1.43973214285714	0.523809523809524	1	0	tctctatcatggctcgagagGcctggtccatcagtttctga	10	11	4	2			TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	153197829	153197829	G	T	SNP	NAA10	ENST00000464845	human	ensembl	69_37n	-1	known	missense	c.281	p.A94D	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA10	HGNC	ENSG00000102030	64	0	0	20	19	48.72	-	-	-	T	153197829	G	T	153197829	3	4	433	1	0	0	0	0	1	0	0	0	10188	1203	42	4	442	4	NAA10	23	153197829	Missense_Mutation	SNP	G	TCGA-B6-A0IC-01A-11W-A050-09	82808095	153197829	2072731	43	42223										
PRAMEF13	0	genome.wustl.edu	37	chr1	13448451	13448451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	agcaattttctctagcagagCtccgaggggttcaagactga	11	9	2	3			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	1	13448451	13448451	C	G	SNP	PRAMEF13	ENST00000376132	human	ensembl	69_37n	-1	known	missense	c.1024	p.A342P	0.001	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495	150	0	0	136	40	22.73	-	-	-	G	13448451	C	G	13448451	3	3	434	1	0	0	0	0	1	0	0	0	12506	797	28	4	404	4	PRAMEF13	1	13448451	Missense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09		13448451	235802170	1	42224										
ROR1	0	genome.wustl.edu	37	chr1	64643348	64643348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ttgtctgccttctaggtgccGtcactcaggaacaacctgtg	10	12	4	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	1	64643348	64643348	G	A	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.1624	p.V542I	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	108	0	0	99	52	34.44	-	-	-	A	64643348	G	A	64643348	3	1	434	1	0	0	0	0	1	0	0	0	13612	1145	40	1	1666	1	ROR1	1	64643348	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	51194897	64643348	184607273	2	42225										
IL1RN	0	genome.wustl.edu	37	chr2	113888708	113888708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	gcctgtcctgtgtcaagtctGgtgatgagaccagactccag	12	11	2	3			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	2	113888708	113888708	G	T	SNP	IL1RN	ENST00000259206	human	ensembl	69_37n	1	known	missense	c.301	p.G101C	0.976	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_IL_rcpt_IL1RA,prints_Interleukin_1	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_IL_rcpt_IL1RA,prints_Interleukin_1	-	no_errors	IL1RN	HGNC	ENSG00000136689	82	0	0	106	52	32.91	-	-	-	T	113888708	G	T	113888708	3	4	434	1	0	0	0	0	1	0	0	0	7719	1348	47	4	383	4	IL1RN	2	113888708	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09		113888708	129310665	3	42226										
LCT	0	genome.wustl.edu	37	chr2	136564944	136564945	+	Frame_Shift_Ins	INS	-	-	A													0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	aggcgacataccctcgaaggINStctataccatcgagcctgta							TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	2	136564944	136564945	-	A	INS	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3927_3926	p.L1310fs	0.983:0.976	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	51	0	0	72	30	29.41	-	-	-	A	136564945	-	A	136564944	7	5	434	1	0	1	1	0	0	0	0	0	8747	1252	44	0	1892	0	LCT	2	136564944	Frame_Shift_Ins	INS	-	TCGA-B6-A0IE-01A-11W-A050-09	22676236	136564944	106634429	4	42227										
GPR1	0	genome.wustl.edu	37	chr2	207041836	207041836	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	tcccagaacaaaagccaaacAatataacaccagggagaccc	6	13	0	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	2	207041836	207041836	A	C	SNP	GPR1	ENST00000407325	human	ensembl	69_37n	-1	known	missense	c.136	p.C46G	0.011	prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_ATII_rcpt	-	no_errors	GPR1	HGNC	ENSG00000183671	119	0	0	177	46	20.63	-	-	-	C	207041836	A	C	207041836	3	2	434	1	0	0	0	0	1	0	0	0	6671	130	5	5	935	5	GPR1	2	207041836	Missense_Mutation	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09	70476892	207041836	36157537	5	42228										
LTF	0	genome.wustl.edu	37	chr3	46492156	46492156	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	tccctttcagcctcgtctgaCaggtcctctgcagggaaggt	11	13	3	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	3	46492156	46492156	C	T	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	silent	c.711	p.L237	0.989	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	85	0	0	61	10	14.08	-	-	-	T	46492156	C	T	46492156	2	4	434	1	0	0	0	0	0	0	0	1	9145	465	17	4		4	LTF	3	46492156	Silent	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09		46492156	151530274	6	42229										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	75	0	0	115	31	21.23	-	-	-	G	178952085	A	G	178952085	3	3	434	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09	132459929	178952085	19070345	7	42230										
MUC4	0	genome.wustl.edu	37	chr3	195497194	195497194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	catctttctaatccaagactCggcctgctggactagcaggc	9	13	2	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	3	195497194	195497194	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.13291	p.E4431K	0.989	smart_Nidogen_extracell_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	36	0	0	78	24	23.3	-	-	-	T	195497194	C	T	195497194	3	4	434	1	0	0	0	0	1	0	0	0	10050	893	31	1	3027	1	MUC4	3	195497194	Missense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09	16545109	195497194	2525236	8	42231										
MUC4	0	genome.wustl.edu	37	chr3	195510725	195510725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	agtgctggtgacaggaagagGggtggcgtgacctgtggatg	20	5	0	3			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	3	195510725	195510725	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.7726	p.P2576S	0.025	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	29	0	0	31	5	13.89	-	-	-	A	195510725	G	A	195510725	3	1	434	1	0	0	0	0	1	0	0	0	10050	1232	43	4		4	MUC4	3	195510725	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	13531	195510725	2511705	9	42232										
ADAMTS12	0	genome.wustl.edu	37	chr5	33576497	33576497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ttccattactgtgctgaaggGtggccaccaggactccctgc	11	13	0	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	5	33576497	33576497	G	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.3634	p.P1212S	0.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	268	1	0.37	268	32	10.67	-	-	-	A	33576497	G	A	33576497	3	1	434	1	0	0	0	0	1	0	0	0	257	1261	44	4	1174	4	ADAMTS12	5	33576497	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09		33576497	147338763	10	42233										
KIF2A	0	genome.wustl.edu	37	chr5	61668293	61668293	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	agtttggaattagtccatcaGacattcccttctcacagggt	8	10	2	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	5	61668293	61668293	G	C	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.1675	p.D559H	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	217	0	0	123	108	46.75	-	-	-	C	61668293	G	C	61668293	3	2	434	1	0	0	0	0	1	0	0	0	8349	942	33	2	1741	2	KIF2A	5	61668293	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	28091796	61668293	119246967	11	42234										
SKIV2L	0	genome.wustl.edu	37	chr6	31937382	31937383	+	Frame_Shift_Ins	INS	-	-	G													0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	tgagatgtgtcgctcactgcINSggggggcagcccgcctggta							TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	6	31937382	31937383	-	G	INS	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	frame_shift_ins	c.3631_3632	p.A1213fs	1.000:1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	19	0	0	16	3	15.79	-	-	-	G	31937383	-	G	31937382	7	5	434	1	0	1	1	0	0	0	0	0	14448	759	27	0	3741	0	SKIV2L	6	31937382	Frame_Shift_Ins	INS	-	TCGA-B6-A0IE-01A-11W-A050-09		31937382	139177685	12	42235										
ZNF3	0	genome.wustl.edu	37	chr7	99673193	99673193	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	tggcctttaggagcgcagccGccaacatctcatcccccagg	10	16	1	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	7	99673193	99673193	G	C	SNP	ZNF3	ENST00000299667	human	ensembl	69_37n	-1	known	missense	c.116	p.A39G	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526	341	0	0	300	123	29.08	-	-	-	C	99673193	G	C	99673193	3	2	434	1	0	0	0	0	1	0	0	0	17925	1087	38	3	1365	3	ZNF3	7	99673193	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09		99673193	59465470	13	42236										
ABRA	0	genome.wustl.edu	37	chr8	107782189	107782189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ggggtggcgactttggggcaCtctgagctttctggtgtgaa	17	7	2	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	8	107782189	107782189	C	A	SNP	ABRA	ENST00000311955	human	ensembl	69_37n	-1	known	missense	c.230	p.S77I	0.000	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	136	0	0	340	70	17.03	-	-	-	A	107782189	C	A	107782189	3	1	434	1	0	0	0	0	1	0	0	0	100	565	20	4	923	4	ABRA	8	107782189	Missense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09		107782189	38581833	14	42237										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18776871	18776871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ggcagaggaagctgcacttcGtggtggggggcttcgcctac	17	10	0	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	9	18776871	18776871	G	A	SNP	ADAMTSL1	ENST00000380548	human	ensembl	69_37n	1	novel	missense	c.2644	p.V882M	0.171	pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	16	0	0	10	13	56.52	-	-	-	A	18776871	G	A	18776871	3	1	434	1	0	0	0	0	1	0	0	0	274	1145	40	1	2722	1	ADAMTSL1	9	18776871	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09		18776871	122436560	15	42238										
DBC1	0	genome.wustl.edu	37	chr9	121930047	121930047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ccatgtggatgaagtccatgCggttcttgttgctcttgaga	12	8	2	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	9	121930047	121930047	C	T	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.1601	p.R534H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	111	0	0	68	55	44.72	-	-	-	T	121930047	C	T	121930047	3	4	434	1	0	0	0	0	1	0	0	0	4279	768	27	1	688	1	DBC1	9	121930047	Missense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09	103153176	121930047	19283384	16	42239										
RIC8A	0	genome.wustl.edu	37	chr11	212869	212869	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	tcaagtacacaggctatgggAatgctgctggccttctggct	12	10	2	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	11	212869	212869	A	G	SNP	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	missense	c.1261	p.N421D	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,prints_Synembryn	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	40	0	0	14	13	48.15	-	-	-	G	212869	A	G	212869	3	3	434	1	0	0	0	0	1	0	0	0	13439	246	9	5	1291	5	RIC8A	11	212869	Missense_Mutation	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09		212869	134793647	17	42240										
PRICKLE1	0	genome.wustl.edu	37	chr12	42853698	42853698	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	aactgaggggtgggaagtgcAgatggtggactagaaaggtc	18	4	0	3			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	12	42853698	42853698	A	T	SNP	PRICKLE1	ENST00000345127	human	ensembl	69_37n	-1	known	silent	c.2409	p.S803	0.043	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174	385	0	0	372	187	33.45	-	-	-	T	42853698	A	T	42853698	2	4	434	1	0	0	0	0	0	0	0	1	12567	175	7	5		5	PRICKLE1	12	42853698	Silent	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09		42853698	90998197	18	42241										
LRRC43	0	genome.wustl.edu	37	chr12	122685345	122685346	+	Frame_Shift_Ins	INS	-	-	C													0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	cccaaggagctccggcaggaINScccccccatcctccaggtgc							TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	12	122685345	122685346	-	C	INS	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	frame_shift_ins	c.1673_1674	p.I561fs	1.000:0.997	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	30	0	0	26	3	10.34	-	-	-	C	122685346	-	C	122685345	7	5	434	1	0	1	1	0	0	0	0	0	9067	275	10	0	1711	0	LRRC43	12	122685345	Frame_Shift_Ins	INS	-	TCGA-B6-A0IE-01A-11W-A050-09	79831647	122685345	11166550	19	42242										
VPS39	0	genome.wustl.edu	37	chr15	42458983	42458983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	cccacacctttctcgtggagCcccttcttctcatacaggat	6	16	3	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	15	42458983	42458983	C	T	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	silent	c.1539	p.G513	1.000	pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	122	0	0	112	56	33.14	-	-	-	T	42458983	C	T	42458983	2	4	434	1	0	0	0	0	0	0	0	1	17306	726	26	4		4	VPS39	15	42458983	Silent	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09		42458983	60072409	20	42243										
TBC1D2B	0	genome.wustl.edu	37	chr15	78316850	78316850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	acttgtcatactgggatgacCggactgtctgctggagcagt	13	9	2	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	15	78316850	78316850	C	T	SNP	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	missense	c.1118	p.R373Q	0.992	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	91	0	0	110	16	12.7	-	-	-	T	78316850	C	T	78316850	3	4	434	1	0	0	0	0	1	0	0	0	15711	652	23	1	1805	1	TBC1D2B	15	78316850	Missense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09	35857867	78316850	24214542	21	42244										
TP53	0	genome.wustl.edu	37	chr17	7577018	7577018	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	cttcttgtcctgcttgcttaCctcgcttagtgctccctggg	9	14	1	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	17	7577018	7577018	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.919+1	e7+1	0.976	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	347	0	0	170	143	45.69	-	-	-	T	7577018	C	T	7577018	5	4	434	1	0	0	0	0	0	0	1	0	16477	521	18	4	366	4	TP53	17	7577018	Splice_Site	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09		7577018	73618192	22	42245										
GUCY2D	0	genome.wustl.edu	37	chr17	7910008	7910008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	ctgacccctcgtgctggttcGatccaaacaacatctgcggt	9	14	1	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	17	7910008	7910008	G	A	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	missense	c.1354	p.D452N	0.981	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	31	0	0	22	4	15.38	-	-	-	A	7910008	G	A	7910008	3	1	434	1	0	0	0	0	1	0	0	0	6948	1058	37	1	1364	1	GUCY2D	17	7910008	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	332990	7910008	73285202	23	42246										
NLK	0	genome.wustl.edu	37	chr17	26495615	26495615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	atgctattgacatctggtctGtgggatgtatctttgcagaa	11	6	3	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	17	26495615	26495615	G	A	SNP	NLK	ENST00000407008	human	ensembl	69_37n	1	known	missense	c.979	p.V327M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NLK	HGNC	ENSG00000087095	117	0	0	78	36	31.58	-	-	-	A	26495615	G	A	26495615	3	1	434	1	0	0	0	0	1	0	0	0	10538	1377	48	4	1001	4	NLK	17	26495615	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	18585607	26495615	54699595	24	42247										
GJD3	0	genome.wustl.edu	37	chr17	38519722	38519722	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	gcactgggcctcgggcagtcCgggggcgcactgcgccgccg	18	16	0	0			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	17	38519722	38519722	C	A	SNP	GJD3	ENST00000337376	human	ensembl	69_37n	-1	known	nonsense	c.346	p.G116*	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD3	HGNC	ENSG00000183153	11	0	0	3	5	62.5	-	-	-	A	38519722	C	A	38519722	4	1	434	1	0	0	0	0	0	1	0	0	6470	661	23	3	542	3	GJD3	17	38519722	Nonsense_Mutation	SNP	C	TCGA-B6-A0IE-01A-11W-A050-09	12024107	38519722	42675488	25	42248										
DNAI2	0	genome.wustl.edu	37	chr17	72283239	72283239	+	Splice_Site	DEL	T	T	-													0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	aaaccatcaatgtgttcaggTagcgccatagccaggcaggt							TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	17	72283239	72283239	T	-	DEL	DNAI2	ENST00000311014	human	ensembl	69_37n	1	known	splice_site_del	c.467+2	e3+2	1.000	-	-	-	no_errors	DNAI2	HGNC	ENSG00000171595	60	0	0	121	465	75.61	-	-	-	-	72283239	T	-	72283239	8	5	434	1	0	1	0	1	0	0	1	0	4645	1652	57	0	479	0	DNAI2	17	72283239	Splice_Site	DEL	T	TCGA-B6-A0IE-01A-11W-A050-09	33763517	72283239	8911971	26	42249										
MYO5B	0	genome.wustl.edu	37	chr18	47352891	47352891	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	acacgctgggatgtggattgAgtccatggttagagaagatg	15	5	0	3			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	18	47352891	47352891	A	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.5497	p.S1833A	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	234	0	0	203	78	27.76	-	-	-	C	47352891	A	C	47352891	3	2	434	1	0	0	0	0	1	0	0	0	10151	304	11	5	53	5	MYO5B	18	47352891	Missense_Mutation	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09		47352891	30724357	27	42250										
RTTN	0	genome.wustl.edu	37	chr18	67863738	67863738	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	aacagataaaaataaataccGtgtttattggagaaaaaacc	6	5	0	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	18	67863738	67863738	G	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	silent	c.840	p.H280	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	127	0	0	138	44	24.18	-	-	-	A	67863738	G	A	67863738	2	1	434	1	0	0	0	0	0	0	0	1	13823	1159	40	1		1	RTTN	18	67863738	Silent	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09	20510847	67863738	10213510	28	42251										
ZNF439	0	genome.wustl.edu	37	chr19	11979022	11979022	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	aaaaaactcacagtggagagAaaccgtataaatgcaagcaa	8	7	1	1			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	19	11979022	11979022	A	T	SNP	ZNF439	ENST00000304030	human	ensembl	69_37n	1	known	nonsense	c.1138	p.K380*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291	125	0	0	104	51	32.9	-	-	-	T	11979022	A	T	11979022	4	4	434	1	0	0	0	0	0	1	0	0	18007	247	9	5	1148	5	ZNF439	19	11979022	Nonsense_Mutation	SNP	A	TCGA-B6-A0IE-01A-11W-A050-09		11979022	47149961	29	42252										
APOL5	0	genome.wustl.edu	37	chr22	36116635	36116635	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	2	0.913683819682119	0.927920463960232	2.62910798122066	0.563380281690141	1	1	0	gcttgggagaaggttgtaaaGaaatgtggcttcgaaaggta	15	3	0	2			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cb39f50-5031-4b08-baa3-1a366ada6514	513424ac-0f6a-498a-b610-34f825d7dc63	22	36116635	36116635	G	A	SNP	APOL5	ENST00000249044	human	ensembl	69_37n	1	known	missense	c.76	p.E26K	0.000	NULL	pfam_ApoL	-	no_errors	APOL5	HGNC	ENSG00000128313	98	0	0	145	46	24.08	-	-	-	A	36116635	G	A	36116635	3	1	434	1	0	0	0	0	1	0	0	0	811	943	33	2	82	2	APOL5	22	36116635	Missense_Mutation	SNP	G	TCGA-B6-A0IE-01A-11W-A050-09		36116635	15187931	30	42253										
PTGER3	0	genome.wustl.edu	37	chr1	71512366	71512366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	aaccctggaactacctaccaGgagcggagaccagcagaccg	11	14	0	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	1	71512366	71512366	G	C	SNP	PTGER3	ENST00000354608	human	ensembl	69_37n	-1	known	missense	c.895	p.L299V	0.881	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	24	0	0	10	8	44.44	-	-	-	C	71512366	G	C	71512366	3	2	435	1	0	0	0	0	1	0	0	0	12825	991	35	4	596	4	PTGER3	1	71512366	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		71512366	177738255	1	42254										
FLG	0	genome.wustl.edu	37	chr1	152285981	152285981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	agaccctgaacgtccagaccGttcccctgaccggccacgtg	10	17	0	4			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	1	152285981	152285981	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.1381	p.R461W	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	196	0	0	153	76	33.19	-	-	-	A	152285981	G	A	152285981	3	1	435	1	0	0	0	0	1	0	0	0	5968	1144	40	1	10808	1	FLG	1	152285981	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	80773615	152285981	96964640	2	42255										
GPR52	0	genome.wustl.edu	37	chr1	174417411	174417411	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gtgttgctgacatttctgatCattgctgggaatctaacagt	10	7	3	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	1	174417411	174417411	C	A	SNP	GPR52	ENST00000367685	human	ensembl	69_37n	1	known	silent	c.162	p.I54	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737	284	0	0	182	102	35.66	-	-	-	A	174417411	C	A	174417411	2	1	435	1	0	0	0	0	0	0	0	1	6748	816	29	2		2	GPR52	1	174417411	Silent	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	22131430	174417411	74833210	3	42256										
SLC35F3	0	genome.wustl.edu	37	chr1	234452419	234452419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gatggcttccacagccactcCgtcatcggcatcgcactggt	10	15	1	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	1	234452419	234452419	C	T	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	silent	c.900	p.S300	0.001	pfam_DUF914_euk	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	98	0	0	121	76	38.58	-	-	-	T	234452419	C	T	234452419	2	4	435	1	0	0	0	0	0	0	0	1	14679	639	23	1		1	SLC35F3	1	234452419	Silent	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	60035008	234452419	14798202	4	42257										
OR2T3	0	genome.wustl.edu	37	chr1	248636826	248636826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tcctcatccactcagagcccCgcctccacacccccatgtac	4	22	2	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	1	248636826	248636826	C	T	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	missense	c.175	p.R59C	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	367	1	0.27	393	99	20.12	-	-	-	T	248636826	C	T	248636826	3	4	435	1	0	0	0	0	1	0	0	0	11096	652	23	1	177	1	OR2T3	1	248636826	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	14184407	248636826	613795	5	42258										
C2orf29	0	genome.wustl.edu	37	chr2	101879132	101879132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tcacagaagctttagtcagcGgaccaaagccacctattgaa	8	11	2	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	2	101879132	101879132	G	A	SNP	C2orf29	ENST00000289382	human	ensembl	69_37n	1	known	missense	c.811	p.G271R	1.000	NULL	pfam_DUF2363	-	no_errors	C2orf29	HGNC	ENSG00000158435	188	0	0	73	27	27	-	-	-	A	101879132	G	A	101879132	3	1	435	1	0	0	0	0	1	0	0	0	2181	1117	39	1	821	1	C2orf29	2	101879132	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		101879132	141320241	6	42259										
ADAMTS9	0	genome.wustl.edu	37	chr3	64589940	64589940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	atcgccactgggttcttggtGcactgtatgtgcttctcctc	10	12	2	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	3	64589940	64589940	G	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.3542	p.A1181E	0.000	superfamily_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	167	0	0	215	55	20.37	-	-	-	T	64589940	G	T	64589940	3	4	435	1	0	0	0	0	1	0	0	0	273	1319	46	4	2329	4	ADAMTS9	3	64589940	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		64589940	133432490	7	42260										
SI	0	genome.wustl.edu	37	chr3	164781250	164781250	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ccattgcattgctattcattAaaaaaacaccgaatgacttt							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	3	164781250	164781250	A	-	DEL	SI	ENST00000264382	human	ensembl	69_37n	-1	known	frame_shift_del	c.887	p.L296fs	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	41	0	0	14	3	17.65	-	-	-	-	164781250	A	-	164781250	7	5	435	1	0	1	0	1	0	0	0	0	14386	372	13	0	4760	0	SI	3	164781250	Frame_Shift_Del	DEL	A	TCGA-B6-A0IG-01A-11W-A050-09	100191310	164781250	33241180	8	42261										
NPFFR2	0	genome.wustl.edu	37	chr4	72897694	72897694	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tctcatctgcaccggacaagGaggcggggagggagcgcaga	17	10	2	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	4	72897694	72897694	G	C	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.76	p.E26Q	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	65	0	0	53	19	26.39	-	-	-	C	72897694	G	C	72897694	3	2	435	1	0	0	0	0	1	0	0	0	10650	1175	41	2	78	2	NPFFR2	4	72897694	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		72897694	118256582	9	42262										
ANK2	0	genome.wustl.edu	37	chr4	114199618	114199618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	taaacacaccctttacagaaCggccttaccccgctccatgt	5	16	0	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	4	114199618	114199618	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.1785	p.N595	0.988	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	65	0	0	62	24	27.27	-	-	-	T	114199618	C	T	114199618	2	4	435	1	0	0	0	0	0	0	0	1	621	535	19	1		1	ANK2	4	114199618	Silent	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	41301924	114199618	76954658	10	42263										
ZNF76	0	genome.wustl.edu	37	chr6	35262385	35262386	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gaaaggggatcccacggccaINSgagaagtcaacaaggaataa							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	6	35262385	35262386	-	T	INS	ZNF76	ENST00000498555	human	ensembl	69_37n	1	putative	frame_shift_ins	c.245_246	p.Q82fs	0.000:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF76	HGNC	ENSG00000065029	73	0	0	49	11	18.33	-	-	-	T	35262386	-	T	35262385	7	5	435	1	0	1	1	0	0	0	0	0	18229	203	7	0		0	ZNF76	6	35262385	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09		35262385	135852682	11	42264										
PKD1L1	0	genome.wustl.edu	37	chr7	47872771	47872771	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	catgaacctgcagcttagggGctggacaagctgtgccattg	13	10	0	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	47872771	47872771	G	C	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.6254	p.A2085G	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	32	0	0	24	63	72.41	-	-	-	C	47872771	G	C	47872771	3	2	435	1	0	0	0	0	1	0	0	0	12038	1203	42	4	2363	4	PKD1L1	7	47872771	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		47872771	111265892	12	42265										
PKD1L1	0	genome.wustl.edu	37	chr7	47872839	47872841	+	In_Frame_Del	DEL	TGA	TGA	-													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ccactcccagagagaatggcTgatgcaggttgctagaatga							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	47872839	47872841	TGA	-	DEL	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	in_frame_del	c.6186_6184	p.S2062in_frame_del	0.002:0.002:0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	64	0	0	36	21	36.84	-	-	-	-	47872841	TGA	-	47872839	7	5	435	1	0	1	0	1	0	0	0	0	12038	1567	55	0	2431	0	PKD1L1	7	47872839	In_Frame_Del	DEL	TGA	TCGA-B6-A0IG-01A-11W-A050-09	68	47872839	111265824	13	42266	345	2								
PKD1L1	0	genome.wustl.edu	37	chr7	47872848	47872849	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	agagaatggctgatgcaggtINStgctagaatgacaaggtcat							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	47872848	47872849	-	C	INS	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6177_6176	p.P2060fs	0.000:0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	62	0	0	33	21	38.89	-	-	-	C	47872849	-	C	47872848	7	5	435	1	0	1	1	0	0	0	0	0	12038	1722	60	0	2440	0	PKD1L1	7	47872848	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09	9	47872848	111265815	14	42267	345	2								
NPTX2	0	genome.wustl.edu	37	chr7	98254285	98254285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	caaggtgtccctcccactccGcacaaactacctatacggca	6	17	0	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	98254285	98254285	G	A	SNP	NPTX2	ENST00000265634	human	ensembl	69_37n	1	known	missense	c.695	p.R232H	1.000	superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	15	0	0	11	9	45	-	-	-	A	98254285	G	A	98254285	3	1	435	1	0	0	0	0	1	0	0	0	10676	1087	38	1	705	1	NPTX2	7	98254285	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	50381437	98254285	60884378	15	42268										
ACTL6B	0	genome.wustl.edu	37	chr7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tctccttcttcttccagtttINSgggggggcaccctcccggac							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	21	0	0	25	5	16.67	-	-	-	G	100245131	-	G	100245130	7	5	435	1	0	1	1	0	0	0	0	0	199	1799	63	0	612	0	ACTL6B	7	100245130	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09	1990845	100245130	58893533	16	42269										
RELN	0	genome.wustl.edu	37	chr7	103276003	103276003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	cacgtgctcagaacagatttGctccccagtctcagtgtgaa	9	12	2	3			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	103276003	103276003	G	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.2334	p.S778R	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	124	0	0	70	47	40.17	-	-	-	T	103276003	G	T	103276003	3	4	435	1	0	0	0	0	1	0	0	0	13303	1310	46	4	8236	4	RELN	7	103276003	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	3030873	103276003	55862660	17	42270										
PTPRN2	0	genome.wustl.edu	37	chr7	157874006	157874007	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	cacctgtggccttctccacaINStcctcagtggtcacgttttg							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	7	157874006	157874007	-	G	INS	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1776_1775	p.V593fs	0.010:0.084	pfam_Receptor_IA-2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	78	0	0	104	43	29.25	-	-	-	G	157874007	-	G	157874006	7	5	435	1	0	1	1	0	0	0	0	0	12891	214	8	0	1392	0	PTPRN2	7	157874006	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09	54598003	157874006	1264657	18	42271										
C9orf153	0	genome.wustl.edu	37	chr9	88842313	88842313	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	cttgttcattttattgacacTgtataaagcaaacatattaa	4	6	1	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	9	88842313	88842313	T	A	SNP	C9orf153	ENST00000376001	human	ensembl	69_37n	-1	known	splice_site	c.243-2	e3-2	0.000	-	-	-	no_errors	C9orf153	HGNC	ENSG00000187753	53	0	0	35	14	28.57	-	-	-	A	88842313	T	A	88842313	5	1	435	1	0	0	0	0	0	0	1	0	2489	1594	55	5	68	5	C9orf153	9	88842313	Splice_Site	SNP	T	TCGA-B6-A0IG-01A-11W-A050-09		88842313	52371118	19	42272										
MRC1	0	genome.wustl.edu	37	chr10	18155491	18155491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	acttcatatatttaatgcagGgcgaaagccagggtgtgttg	12	6	1	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	10	18155491	18155491	G	A	SNP	MRC1	ENST00000239761	human	ensembl	69_37n	1	known	missense	c.1784	p.G595E	0.997	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586	60	0	0	16	54	77.14	-	-	-	A	18155491	G	A	18155491	3	1	435	1	0	0	0	0	1	0	0	0	9828	1246	43	4	6321	4	MRC1	10	18155491	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		18155491	117379256	20	42273										
MYO3A	0	genome.wustl.edu	37	chr10	26243889	26243889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gtcagattctatgggatataCtttaagaaggataaagtaaa	9	3	2	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	10	26243889	26243889	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.255	p.Y85	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	230	0	0	204	34	14.29	-	-	-	T	26243889	C	T	26243889	2	4	435	1	0	0	0	0	0	0	0	1	10148	576	20	4		4	MYO3A	10	26243889	Silent	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	8088398	26243889	109290858	21	42274										
NSMCE4A	0	genome.wustl.edu	37	chr10	123719061	123719062	+	Frame_Shift_Del	DEL	TT	TT	-													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ataattccttgatttctaacTtgtgtgttatgttcaaatcc							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	10	123719061	123719062	TT	-	DEL	NSMCE4A	ENST00000369023	human	ensembl	69_37n	-1	known	frame_shift_del	c.1038_1037	p.Q346fs	0.220:0.489	pfam_Nse4	pfam_Nse4	-	no_errors	NSMCE4A	HGNC	ENSG00000107672	567	0	0	329	119	25.43	-	-	-	-	123719062	TT	-	123719061	7	5	435	1	0	1	0	1	0	0	0	0	10750	1606	56	0	127	0	NSMCE4A	10	123719061	Frame_Shift_Del	DEL	TT	TCGA-B6-A0IG-01A-11W-A050-09	97475172	123719061	11815686	22	42275										
PRDX5	0	genome.wustl.edu	37	chr11	64089058	64089059	+	Frame_Shift_Del	DEL	GT	GT	-													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tgggcccctctttccggcagGttctccatggtggtacagga							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	11	64089058	64089059	GT	-	DEL	PRDX5	ENST00000265462	human	ensembl	69_37n	1	known	frame_shift_del	c.540_541	p.R180fs	1.000:1.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432	23	0	0	34	21	37.5	-	-	-	-	64089059	GT	-	64089058	7	5	435	1	0	1	0	1	0	0	0	0	12549	1275	44	0	562	0	PRDX5	11	64089058	Frame_Shift_Del	DEL	GT	TCGA-B6-A0IG-01A-11W-A050-09		64089058	70917458	23	42276										
ATG2A	0	genome.wustl.edu	37	chr11	64669591	64669591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gtgaagggggtggggccccaCtccgttcacctgggaatagg	17	10	1	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	11	64669591	64669591	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	missense	c.3968	p.S1323N	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	29	0	0	28	10	26.32	-	-	-	T	64669591	C	T	64669591	3	4	435	1	0	0	0	0	1	0	0	0	1097	565	20	4	1906	4	ATG2A	11	64669591	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	580533	64669591	70336925	24	42277										
ITGB7	0	genome.wustl.edu	37	chr12	53594062	53594063	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gcacagctggggtgtgagagINSgatgcacttctggcaggagg							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	12	53594062	53594063	-	C	INS	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	frame_shift_ins	c.166_165	p.L55fs	0.994:0.997	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	113	0	0	85	350	80.46	-	-	-	C	53594063	-	C	53594062	7	5	435	1	0	1	1	0	0	0	0	0	7954	1000	35	0	2286	0	ITGB7	12	53594062	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09		53594062	80257833	25	42278										
LRRC43	0	genome.wustl.edu	37	chr12	122669187	122669187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gctgggcctggtccgcagccGccactccccctgggctctgc	13	19	1	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	12	122669187	122669187	G	A	SNP	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	missense	c.272	p.R91H	0.836	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	98	0	0	80	38	32.2	-	-	-	A	122669187	G	A	122669187	3	1	435	1	0	0	0	0	1	0	0	0	9067	1087	38	1	278	1	LRRC43	12	122669187	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	69075125	122669187	11182708	26	42279										
PDS5B	0	genome.wustl.edu	37	chr13	33344430	33344430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ctgatgaacagcagtggcctGaggaaaagaggctcaaagaa	13	7	1	5			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	13	33344430	33344430	G	C	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.3796	p.E1266Q	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	145	0	0	64	26	28.89	-	-	-	C	33344430	G	C	33344430	3	2	435	1	0	0	0	0	1	0	0	0	11765	1291	45	2	3918	2	PDS5B	13	33344430	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		33344430	81825448	27	42280										
RB1	0	genome.wustl.edu	37	chr13	49050933	49050933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gcaaccctcctaaaccactgAaaaaactacgctttgatatt	4	12	0	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	13	49050933	49050933	A	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	missense	c.2617	p.K873E	1.000	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	192	0	0	76	36	32.14	-	-	-	G	49050933	A	G	49050933	3	3	435	1	0	0	0	0	1	0	0	0	13181	247	9	5	2715	5	RB1	13	49050933	Missense_Mutation	SNP	A	TCGA-B6-A0IG-01A-11W-A050-09	15706503	49050933	66118945	28	42281										
TM9SF1	0	genome.wustl.edu	37	chr14	24664018	24664018	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gcttttgtgacgtatcttctCagggcagcagactggaagct	12	9	2	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	14	24664018	24664018	C	T	SNP	TM9SF1	ENST00000556387	human	ensembl	69_37n	-1	known	missense	c.835	p.E279K	1.000	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	109	0	0	87	31	26.27	-	-	-	T	24664018	C	T	24664018	3	4	435	1	0	0	0	0	1	0	0	0	16072	835	29	2	1675	2	TM9SF1	14	24664018	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09		24664018	82685522	29	42282										
DAAM1	0	genome.wustl.edu	37	chr14	59792440	59792440	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	aactagaatttgccaaaagaTttgaactggtacgtatgctt	8	6	0	3			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	14	59792440	59792440	T	A	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.1048	p.F350I	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	288	0	0	145	74	33.79	-	-	-	A	59792440	T	A	59792440	3	1	435	1	0	0	0	0	1	0	0	0	4247	1493	52	5	1078	5	DAAM1	14	59792440	Missense_Mutation	SNP	T	TCGA-B6-A0IG-01A-11W-A050-09	35128422	59792440	47557100	30	42283										
DISP2	0	genome.wustl.edu	37	chr15	40660037	40660038	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	agcaagagccagctgccgtcINSgggggggctggcgcagcgcg							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	15	40660037	40660038	-	G	INS	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	frame_shift_ins	c.1724_1725	p.L578fs	0.288:0.002	pfscan_SSD	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	18	0	0	15	3	16.67	-	-	-	G	40660038	-	G	40660037	7	5	435	1	0	1	1	0	0	0	0	0	4576	893	31	0	1754	0	DISP2	15	40660037	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09		40660037	61871355	31	42284										
EEF2K	0	genome.wustl.edu	37	chr16	22268146	22268146	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ttccacctggagcactacatCgagggcaagtacatcaagta	9	11	1	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	16	22268146	22268146	C	T	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	silent	c.696	p.I232	0.984	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	64	0	0	56	14	20	-	-	-	T	22268146	C	T	22268146	2	4	435	1	0	0	0	0	0	0	0	1	4965	874	31	1		1	EEF2K	16	22268146	Silent	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09		22268146	68086607	32	42285										
C16orf78	0	genome.wustl.edu	37	chr16	49433130	49433130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tggatatccacccccacatgGtcgaagaggacatagatgct	10	11	0	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	16	49433130	49433130	G	A	SNP	C16orf78	ENST00000299191	human	ensembl	69_37n	1	known	missense	c.739	p.V247I	0.002	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152	110	0	0	132	24	15.38	-	-	-	A	49433130	G	A	49433130	3	1	435	1	0	0	0	0	1	0	0	0	1848	1261	44	4	757	4	C16orf78	16	49433130	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	27164984	49433130	40921623	33	42286										
BBS2	0	genome.wustl.edu	37	chr16	56536710	56536710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	cctccccagttcggtcacttCgagcatcaacctacaaataa	5	15	2	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	16	56536710	56536710	C	T	SNP	BBS2	ENST00000245157	human	ensembl	69_37n	-1	known	missense	c.815	p.R272Q	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124	104	1	0.95	94	29	23.58	-	-	-	T	56536710	C	T	56536710	3	4	435	1	0	0	0	0	1	0	0	0	1342	884	31	1	1390	1	BBS2	16	56536710	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	7103580	56536710	33818043	34	42287										
ASXL3	0	genome.wustl.edu	37	chr18	31325701	31325701	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gggtgtaatgcatttgccttCaacaggcatcttgaacagaa	10	8	2	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	18	31325701	31325701	C	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.5889	p.F1963L	0.998	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	58	0	0	33	15	31.25	-	-	-	A	31325701	C	A	31325701	3	1	435	1	0	0	0	0	1	0	0	0	1072	825	29	2	5935	2	ASXL3	18	31325701	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09		31325701	46751547	35	42288										
SYT4	0	genome.wustl.edu	37	chr18	40853841	40853841	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gtcagaggtcatcgactgctCatccatggctggcaagccac	11	13	3	1			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	18	40853841	40853841	C	T	SNP	SYT4	ENST00000255224	human	ensembl	69_37n	-1	known	missense	c.553	p.E185K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	186	0	0	85	33	27.97	-	-	-	T	40853841	C	T	40853841	3	4	435	1	0	0	0	0	1	0	0	0	15568	835	29	2	736	2	SYT4	18	40853841	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09	9528140	40853841	37223407	36	42289										
B3GNT8	0	genome.wustl.edu	37	chr19	41932386	41932387	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gggatctcggtggcggcggcINSggccccccaagcctggcagc							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	19	41932386	41932387	-	G	INS	B3GNT8	ENST00000321702	human	ensembl	69_37n	-1	known	frame_shift_ins	c.298_297	p.A99fs	0.133:0.128	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT8	HGNC	ENSG00000177191	8	0	0	4	2	33.33	-	-	-	G	41932387	-	G	41932386	7	5	435	1	0	1	1	0	0	0	0	0	1267	768	27	0	899	0	B3GNT8	19	41932386	Frame_Shift_Ins	INS	-	TCGA-B6-A0IG-01A-11W-A050-09		41932386	17196597	37	42290										
BLCAP	0	genome.wustl.edu	37	chr20	36147543	36147543	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gttgaggggcttggggatgaGgaggacgggcagcagccact	20	7	0	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	20	36147543	36147543	G	C	SNP	BLCAP	ENST00000373537	human	ensembl	69_37n	-1	known	missense	c.34	p.L12V	1.000	pfam_BC10-like	pfam_BC10-like	-	no_errors	BLCAP	HGNC	ENSG00000166619	40	0	0	31	8	20.51	-	-	-	C	36147543	G	C	36147543	3	2	435	1	0	0	0	0	1	0	0	0	1447	1000	35	4	233	4	BLCAP	20	36147543	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		36147543	26877977	38	42291										
BCL2L13	0	genome.wustl.edu	37	chr22	18209657	18209657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	aagcctgccagtgtcactagGccctgagtcctggcagcaga	12	13	1	2			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	22	18209657	18209657	G	T	SNP	BCL2L13	ENST00000317582	human	ensembl	69_37n	1	known	missense	c.815	p.G272V	1.000	NULL	pfam_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L13	HGNC	ENSG00000099968	58	0	0	18	29	61.7	-	-	-	T	18209657	G	T	18209657	3	4	435	1	0	0	0	0	1	0	0	0	1375	1203	42	4	837	4	BCL2L13	22	18209657	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09		18209657	33094909	39	42292										
TBC1D10A	0	genome.wustl.edu	37	chr22	30688471	30688471	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ggctgagtccttgggggctgAgtccttcgggggcacatgct							TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	22	30688471	30688471	A	-	DEL	TBC1D10A	ENST00000215790	human	ensembl	69_37n	-1	known	frame_shift_del	c.1420	p.S474fs	0.155	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992	12	0	0	3	2	40	-	-	-	-	30688471	A	-	30688471	7	5	435	1	0	1	0	1	0	0	0	0	15690	304	11	0	110	0	TBC1D10A	22	30688471	Frame_Shift_Del	DEL	A	TCGA-B6-A0IG-01A-11W-A050-09	12478814	30688471	20616095	40	42293										
MED12	0	genome.wustl.edu	37	chrX	70344907	70344907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	tcgagaaggaggtgaagcccCcacccaaggagaagattgaa	13	9	0	5			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	X	70344907	70344907	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.2137	p.P713S	0.162	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	267	0	0	246	127	33.96	-	-	-	T	70344907	C	T	70344907	3	4	435	1	0	0	0	0	1	0	0	0	9499	623	22	4	2195	4	MED12	23	70344907	Missense_Mutation	SNP	C	TCGA-B6-A0IG-01A-11W-A050-09		70344907	84925653	41	42294										
PGK1	0	genome.wustl.edu	37	chrX	77378339	77378339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	ctttctcttgtagagctaaaGttgcagacaagatccagctc	8	10	1	3			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	X	77378339	77378339	G	T	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.649	p.V217F	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	375	0	0	310	50	13.89	-	-	-	T	77378339	G	T	77378339	3	4	435	1	0	0	0	0	1	0	0	0	11864	1029	36	4	675	4	PGK1	23	77378339	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	7033432	77378339	77892221	42	42295										
ATP2B3	0	genome.wustl.edu	37	chrX	152807210	152807210	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.870092449132039	1.07005347593583	1.56941176470588	0.92318339100346	1	1	0	gggctgccatcctgctgtccGtcatctgtgtggtgctggtc	14	12	2	0			TCGA-B6-A0IG-01A-11W-A050-09	TCGA-B6-A0IG-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8046519-d928-4fd3-b3e2-84585aa4f022	aa1686ba-bc50-4b76-9a59-9971c176876e	X	152807210	152807210	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.490	p.V164I	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	40	0	0	26	18	40.91	-	-	-	A	152807210	G	A	152807210	3	1	435	1	0	0	0	0	1	0	0	0	1145	1145	40	1	500	1	ATP2B3	23	152807210	Missense_Mutation	SNP	G	TCGA-B6-A0IG-01A-11W-A050-09	75428871	152807210	2463350	43	42296										
LCT	0	genome.wustl.edu	37	chr2	136579662	136579662	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tggtgagcacttggtctttaTttatggctgtaagagaagaa	12	4	1	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	2	136579662	136579662	T	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.914	p.N305I	0.774	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	299	0	0	275	32	10.39	-	-	-	A	136579662	T	A	136579662	3	1	436	1	0	0	0	0	1	0	0	0	8747	1493	52	5	4921	5	LCT	2	136579662	Missense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09		136579662	106619711	1	42297										
SLC22A14	0	genome.wustl.edu	37	chr3	38347837	38347837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	cagctggatcctggcagtggGcccccacctgtccaaagctg	12	15	0	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	3	38347837	38347837	G	A	SNP	SLC22A14	ENST00000273173	human	ensembl	69_37n	1	known	missense	c.320	p.G107D	0.001	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	100	0	0	112	21	15.56	-	-	-	A	38347837	G	A	38347837	3	1	436	1	0	0	0	0	1	0	0	0	14534	1203	42	4	322	4	SLC22A14	3	38347837	Missense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09		38347837	159674593	2	42298										
GRB10	0	genome.wustl.edu	37	chr7	50663154	50663154	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	aggtaagatctggaaattttTaattttctggtgatgacaca	9	4	2	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	7	50663154	50663154	T	A	SNP	GRB10	ENST00000398812	human	ensembl	69_37n	-1	known	nonsense	c.1618	p.K540*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070	237	1	0.42	141	73	33.95	-	-	-	A	50663154	T	A	50663154	4	1	436	1	0	0	0	0	0	1	0	0	6807	1763	61	5	174	5	GRB10	7	50663154	Nonsense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09		50663154	108475509	3	42299										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74211389	74211389	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ccgcgattttgggaatgtagTtcaggccatcgctttcattt	10	9	2	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	7	74211389	74211389	T	G	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	missense	c.2462	p.N821T	0.998	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	149	0	0	148	77	34.22	-	-	-	G	74211389	T	G	74211389	3	3	436	1	0	0	0	0	1	0	0	0	6920	1725	60	5	391	5	GTF2IRD2	7	74211389	Missense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09	23548235	74211389	84927274	4	42300										
RFX3	0	genome.wustl.edu	37	chr9	3346744	3346745	+	Frame_Shift_Del	DEL	CA	CA	-													0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tagacatgttgtacctgctgCacagtctgtacctgctgtac							TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	9	3346744	3346745	CA	-	DEL	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	frame_shift_del	c.138_137	p.V46fs	0.999:1.000	pfam_RFX1_trans_act	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	187	0	0	208	26	11.02	-	-	-	-	3346745	CA	-	3346744	7	5	436	1	0	1	0	1	0	0	0	0	13347	697	25	0	2327	0	RFX3	9	3346744	Frame_Shift_Del	DEL	CA	TCGA-B6-A0IH-01A-11D-A10Y-09		3346744	137866687	5	42301										
ZDHHC21	0	genome.wustl.edu	37	chr9	14658806	14658806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	gcagaaagaaaacatcagtgCgtagcaagtaagaagttcag	11	6	2	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	9	14658806	14658806	C	T	SNP	ZDHHC21	ENST00000380916	human	ensembl	69_37n	-1	known	missense	c.445	p.A149T	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC21	HGNC	ENSG00000175893	128	0	0	80	50	38.46	-	-	-	T	14658806	C	T	14658806	3	4	436	1	0	0	0	0	1	0	0	0	17708	755	27	1	360	1	ZDHHC21	9	14658806	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09	11312062	14658806	126554625	6	42302										
RMI1	0	genome.wustl.edu	37	chr9	86617271	86617271	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tgtacagaaaaggaattcacAaatttctaatgaaaatgatt	6	4	2	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	9	86617271	86617271	A	G	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	missense	c.1370	p.Q457R	0.479	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	72	0	0	39	10	20.41	-	-	-	G	86617271	A	G	86617271	3	3	436	1	0	0	0	0	1	0	0	0	13481	130	5	5	1372	5	RMI1	9	86617271	Missense_Mutation	SNP	A	TCGA-B6-A0IH-01A-11D-A10Y-09	71958465	86617271	54596160	7	42303										
CYLC2	0	genome.wustl.edu	37	chr9	105767619	105767619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	attcagccatagaattacaaGctgtaaaagcagatgaaaag	8	6	1	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	9	105767619	105767619	G	T	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	missense	c.706	p.A236S	0.001	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	175	1	0.57	116	42	26.58	-	-	-	T	105767619	G	T	105767619	3	4	436	1	0	0	0	0	1	0	0	0	4173	971	34	4	724	4	CYLC2	9	105767619	Missense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09	19150348	105767619	35445812	8	42304										
OR1Q1	0	genome.wustl.edu	37	chr9	125377831	125377831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ctattcagtgaccaagggtcGcattataacagtcgtgtaca	9	9	1	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	9	125377831	125377831	G	A	SNP	OR1Q1	ENST00000297913	human	ensembl	69_37n	1	known	missense	c.815	p.R272H	0.092	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202	62	0	0	64	12	15.79	-	-	-	A	125377831	G	A	125377831	3	1	436	1	0	0	0	0	1	0	0	0	11044	1087	38	1	817	1	OR1Q1	9	125377831	Missense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09	19610212	125377831	15835600	9	42305										
DUSP13	0	genome.wustl.edu	37	chr10	76863684	76863684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	aagacagtggctgagaggggGtgtaggcgccaggaggagcc	20	7	0	2			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	10	76863684	76863684	G	A	SNP	DUSP13	ENST00000491677	human	ensembl	69_37n	-1	known	missense	c.259	p.P87S	0.002	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	42	0	0	44	7	13.73	-	-	-	A	76863684	G	A	76863684	3	1	436	1	0	0	0	0	1	0	0	0	4848	1261	44	4	744	4	DUSP13	10	76863684	Missense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09		76863684	58671063	10	42306										
C10orf12	0	genome.wustl.edu	37	chr10	98742433	98742433	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ggttgagtctggagacacccAggagctaaatgtcgacccac	12	11	1	2			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	10	98742433	98742433	A	T	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1286	p.Q429L	0.004	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	61	0	0	53	16	22.86	-	-	-	T	98742433	A	T	98742433	3	4	436	1	0	0	0	0	1	0	0	0	1599	188	7	5	1288	5	C10orf12	10	98742433	Missense_Mutation	SNP	A	TCGA-B6-A0IH-01A-11D-A10Y-09	21878749	98742433	36792314	11	42307										
DCHS1	0	genome.wustl.edu	37	chr11	6645151	6645151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tacagtgacagtgactggcaCgactgagctttggggtggct	15	8	0	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	11	6645151	6645151	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.7756	p.V2586M	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	30	0	0	68	9	11.69	-	-	-	T	6645151	C	T	6645151	3	4	436	1	0	0	0	0	1	0	0	0	4318	536	19	1	2144	1	DCHS1	11	6645151	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09		6645151	128361365	12	42308										
PFKM	0	genome.wustl.edu	37	chr12	48535119	48535119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ggaagctggctggagctatgTtgggggctggactggccaag	19	7	0	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	12	48535119	48535119	T	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.1367	p.V456A	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	125	0	0	87	37	29.6	-	-	-	C	48535119	T	C	48535119	3	2	436	1	0	0	0	0	1	0	0	0	11839	1725	60	5	1642	5	PFKM	12	48535119	Missense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09		48535119	85316776	13	42309										
DDX54	0	genome.wustl.edu	37	chr12	113599787	113599787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	cctgactgtcccacaaaccgCttcttcttacggtccctgca	6	17	2	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	12	113599787	113599787	C	T	SNP	DDX54	ENST00000546898	human	ensembl	69_37n	-1	putative	missense	c.418	p.A140T	1.000	pfam_DBP10CT	pfam_DBP10CT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX54	HGNC	ENSG00000123064	145	1	0.68	157	24	13.26	-	-	-	T	113599787	C	T	113599787	3	4	436	1	0	0	0	0	1	0	0	0	4403	796	28	4	449	4	DDX54	12	113599787	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09	65064668	113599787	20252108	14	42310										
HERC2	0	genome.wustl.edu	37	chr15	28357017	28357017	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	gctggctctcctgtaagtgcGatgcgagcgtagtcatctgt	13	10	3	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	15	28357017	28357017	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.14397	p.I4799	1.000	smart_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	144	0	0	116	49	29.7	-	-	-	A	28357017	G	A	28357017	2	1	436	1	0	0	0	0	0	0	0	1	7109	1048	37	1		1	HERC2	15	28357017	Silent	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09		28357017	74174375	15	42311										
KIAA1024	0	genome.wustl.edu	37	chr15	79760670	79760670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tagctgctctgatcgctgctGcggcatgcaccgtcatcctc	10	15	2	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	15	79760670	79760670	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	missense	c.2695	p.A899T	1.000	pfam_UPF0258	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	93	0	0	107	46	30.07	-	-	-	A	79760670	G	A	79760670	3	1	436	1	0	0	0	0	1	0	0	0	8257	1319	46	4	2705	4	KIAA1024	15	79760670	Missense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09	51403653	79760670	22770722	16	42312										
XPO6	0	genome.wustl.edu	37	chr16	28157469	28157469	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ttttaattttacttgtcagaTagtccaaaaacagcgtccag	6	8	1	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	16	28157469	28157469	T	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.1280	p.Y427C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	336	0	0	280	42	13	-	-	-	C	28157469	T	C	28157469	3	2	436	1	0	0	0	0	1	0	0	0	17545	1406	49	5	2161	5	XPO6	16	28157469	Missense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09		28157469	62197284	17	42313										
KRT9	0	genome.wustl.edu	37	chr17	39726220	39726220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ccagcacctgccgcaggccaTtgatgtcagcatccactcct	8	17	1	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	17	39726220	39726220	T	C	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	missense	c.773	p.N258S	0.913	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	84	0	0	96	20	17.24	-	-	-	C	39726220	T	C	39726220	3	2	436	1	0	0	0	0	1	0	0	0	8554	1493	52	5	1118	5	KRT9	17	39726220	Missense_Mutation	SNP	T	TCGA-B6-A0IH-01A-11D-A10Y-09		39726220	41468990	18	42314										
TANC2	0	genome.wustl.edu	37	chr17	61498693	61498693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	gtgtaggccttcgcttctctCcatctagcaatagtatctcc	7	13	3	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	17	61498693	61498693	C	T	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.5350	p.P1784S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	162	0	0	119	30	20.13	-	-	-	T	61498693	C	T	61498693	3	4	436	1	0	0	0	0	1	0	0	0	15637	855	30	2	5448	2	TANC2	17	61498693	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09	21772473	61498693	19696517	19	42315										
SDK2	0	genome.wustl.edu	37	chr17	71364597	71364597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	gctccgaggcccatccccagCggcgttgaaggcggccacgc	14	17	0	1			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	17	71364597	71364597	C	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.5116	p.A1706T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	33	0	0	61	9	12.86	-	-	-	T	71364597	C	T	71364597	3	4	436	1	0	0	0	0	1	0	0	0	14057	768	27	1	1438	1	SDK2	17	71364597	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09	9865904	71364597	9830613	20	42316										
RUNX1	0	genome.wustl.edu	37	chr21	36206716	36206716	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ctggtacttaccctgcatctGactctgaggctgagggttaa	11	10	2	3			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	21	36206716	36206716	G	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	nonsense	c.796	p.Q266*	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	158	0	0	263	84	24.21	-	-	-	A	36206716	G	A	36206716	4	1	436	1	0	0	0	0	0	1	0	0	13832	1299	45	2	691	2	RUNX1	21	36206716	Nonsense_Mutation	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09		36206716	11923179	21	42317										
MAGEC3	0	genome.wustl.edu	37	chrX	140983081	140983081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	tcagccttggcagggttcgcGgatgtgctttcccgacttgc	13	12	1	0			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	X	140983081	140983081	G	A	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	silent	c.936	p.A312	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	97	0	0	164	22	11.83	-	-	-	A	140983081	G	A	140983081	2	1	436	1	0	0	0	0	0	0	0	1	9253	1103	39	1		1	MAGEC3	23	140983081	Silent	SNP	G	TCGA-B6-A0IH-01A-11D-A10Y-09		140983081	14287479	22	42318										
MTM1	0	genome.wustl.edu	37	chrX	149814175	149814175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	1	0.559218559218559	NA	0.559218559218559	1	1	0	ggtgctgtcatggattcatcCagaaaataagacggtcattg	11	7	3	2			TCGA-B6-A0IH-01A-11D-A10Y-09	TCGA-B6-A0IH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a4488b9-74d9-4eb1-a7ef-c894c32db942	348ca096-ee86-4a96-9a09-a90b24e84060	X	149814175	149814175	C	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.698	p.P233L	0.997	pfam_Myotub-related	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	265	0	0	247	35	12.41	-	-	-	T	149814175	C	T	149814175	3	4	436	1	0	0	0	0	1	0	0	0	10009	594	21	4	728	4	MTM1	23	149814175	Missense_Mutation	SNP	C	TCGA-B6-A0IH-01A-11D-A10Y-09	8831094	149814175	5456385	23	42319										
AGRN	0	genome.wustl.edu	37	chr1	987119	987120	+	Frame_Shift_Ins	INS	-	-	T													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tctcacagggctggtggagaINSagtcagcgggggacgtggat							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	987119	987120	-	T	INS	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	frame_shift_ins	c.5575_5576	p.K1859fs	1.000:1.000	superfamily_ConA-like_lec_gl	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	9	0	0	7	3	30	-	-	-	T	987120	-	T	987119	7	5	437	1	0	1	1	0	0	0	0	0	397	247	9	0	5705	0	AGRN	1	987119	Frame_Shift_Ins	INS	-	TCGA-B6-A0IJ-01A-11W-A050-09		987119	248263502	1	42320										
EYA3	0	genome.wustl.edu	37	chr1	28339784	28339784	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctggtactgattctgaccaaGaatagtataggtgggataat	11	5	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	28339784	28339784	G	C	SNP	EYA3	ENST00000373871	human	ensembl	69_37n	-1	known	missense	c.607	p.L203V	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161	166	0	0	97	67	40.61	-	-	-	C	28339784	G	C	28339784	3	2	437	1	0	0	0	0	1	0	0	0	5367	942	33	2	1154	2	EYA3	1	28339784	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	27352665	28339784	220910837	2	42321										
PRKAA2	0	genome.wustl.edu	37	chr1	57159438	57159438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aacattacttttatttttagGattatctaatatgatgtcag	5	4	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	57159438	57159438	G	T	SNP	PRKAA2	ENST00000371244	human	ensembl	69_37n	1	known	missense	c.476	p.G159V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409	166	1	0.6	190	24	11.21	-	-	-	T	57159438	G	T	57159438	3	4	437	1	0	0	0	0	1	0	0	0	12575	1188	41	2	494	2	PRKAA2	1	57159438	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	28819654	57159438	192091183	3	42322										
HFM1	0	genome.wustl.edu	37	chr1	91788756	91788756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gcagccagctatcaatgtaaCctataacatttcagtagttg	7	9	2	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	91788756	91788756	C	A	SNP	HFM1	ENST00000370425	human	ensembl	69_37n	-1	known	missense	c.2428	p.V810F	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669	45	0	0	92	22	19.3	-	-	-	A	91788756	C	A	91788756	3	1	437	1	0	0	0	0	1	0	0	0	7134	521	18	4	1951	4	HFM1	1	91788756	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	34629318	91788756	157461865	4	42323										
APOBEC4	0	genome.wustl.edu	37	chr1	183616996	183616996	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctgggtttatttgggttttgGcccatatgcattggtggtaa	13	5	0	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	183616996	183616996	G	T	SNP	APOBEC4	ENST00000308641	human	ensembl	69_37n	-1	known	silent	c.921	p.G307	0.007	NULL	pfam_APOBEC_N	-	no_errors	APOBEC4	HGNC	ENSG00000173627	153	0	0	75	102	57.63	-	-	-	T	183616996	G	T	183616996	2	4	437	1	0	0	0	0	0	0	0	1	798	1190	42	4		4	APOBEC4	1	183616996	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	91828240	183616996	65633625	5	42324										
PPP1R15B	0	genome.wustl.edu	37	chr1	204379199	204379199	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tcctcagcttcctcatcccaAtcctcaccttctggatcaga	4	17	5	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	204379199	204379199	A	T	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	missense	c.1341	p.D447E	0.384	pfam_Prot_Pase1_reg-su15A/B_C	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	23	0	0	18	11	37.93	-	-	-	T	204379199	A	T	204379199	3	4	437	1	0	0	0	0	1	0	0	0	12441	98	4	5	808	5	PPP1R15B	1	204379199	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	20762203	204379199	44871422	6	42325										
C1orf186	0	genome.wustl.edu	37	chr1	206243207	206243207	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gaagcaggcctgcaggaagaGggacaccaccgcgatcacta	13	12	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	206243207	206243207	G	C	SNP	C1orf186	ENST00000331555	human	ensembl	69_37n	-1	known	missense	c.55	p.L19V	0.001	NULL	NULL	-	no_errors	C1orf186	HGNC	ENSG00000196533	194	0	0	77	89	53.61	-	-	-	C	206243207	G	C	206243207	3	2	437	1	0	0	0	0	1	0	0	0	2039	1000	35	4	479	4	C1orf186	1	206243207	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	1864008	206243207	43007414	7	42326										
PLXNA2	0	genome.wustl.edu	37	chr1	208390491	208390491	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	acaccctcaggggtctcgggCtggacagtgagaaagtagac	14	10	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	208390491	208390491	C	G	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.777	p.Q259H	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	116	0	0	93	11	10.58	-	-	-	G	208390491	C	G	208390491	3	3	437	1	0	0	0	0	1	0	0	0	12194	796	28	4	5031	4	PLXNA2	1	208390491	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	2147284	208390491	40860130	8	42327										
TAF5L	0	genome.wustl.edu	37	chr1	229738621	229738621	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gatggaggtagacaaagagaGgatagaggagaggcatcact	16	4	1	4			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	229738621	229738621	G	C	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	missense	c.293	p.P98R	1.000	pfam_TFIID-su_WD40-assoc_reg	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	41	0	0	43	6	12.24	-	-	-	C	229738621	G	C	229738621	3	2	437	1	0	0	0	0	1	0	0	0	15621	1000	35	4	1490	4	TAF5L	1	229738621	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	21348130	229738621	19512000	9	42328										
OR14I1	0	genome.wustl.edu	37	chr1	248844691	248844691	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tacttttgcagaaaatatatCttcacaaagagtctccacat	4	9	3	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	1	248844691	248844691	C	A	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	missense	c.915	p.K305N	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	82	0	0	82	29	26.13	-	-	-	A	248844691	C	A	248844691	3	1	437	1	0	0	0	0	1	0	0	0	11020	912	32	2	24	2	OR14I1	1	248844691	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	19106070	248844691	405930	10	42329										
BIRC6	0	genome.wustl.edu	37	chr2	32640645	32640645	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tccttgagtgcaataaatcaAgtagaggccttgaataattt	8	6	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	32640645	32640645	A	G	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	silent	c.2286	p.Q762	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	73	0	0	49	9	15.52	-	-	-	G	32640645	A	G	32640645	2	3	437	1	0	0	0	0	0	0	0	1	1443	69	3	5		5	BIRC6	2	32640645	Silent	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09		32640645	210558728	11	42330										
EML4	0	genome.wustl.edu	37	chr2	42557309	42557309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aggagcaggccaaagccaccCttctggaggaccagcaagac	12	13	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	42557309	42557309	C	A	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	missense	c.2908	p.L970I	0.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	44	0	0	21	7	25	-	-	-	A	42557309	C	A	42557309	3	1	437	1	0	0	0	0	1	0	0	0	5136	681	24	4	2998	4	EML4	2	42557309	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	9916664	42557309	200642064	12	42331										
NCKAP5	0	genome.wustl.edu	37	chr2	133887640	133887640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	accgcttctcgctttgaagaCgtaagtgtctctcctcttcc	7	14	3	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	133887640	133887640	C	G	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.251	p.R84P	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	179	0	0	107	57	34.76	-	-	-	G	133887640	C	G	133887640	3	3	437	1	0	0	0	0	1	0	0	0	10295	536	19	3	5538	3	NCKAP5	2	133887640	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	91330331	133887640	109311733	13	42332										
LRP2	0	genome.wustl.edu	37	chr2	170177303	170177303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttaccgcagccaatttcatcCgcgtcatctgaacagtcttt	6	13	4	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	170177303	170177303	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	silent	c.171	p.A57	0.002	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	181	0	0	80	56	41.18	-	-	-	A	170177303	C	A	170177303	2	1	437	1	0	0	0	0	0	0	0	1	9022	639	23	3		3	LRP2	2	170177303	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	36289663	170177303	73022070	14	42333										
TTN	0	genome.wustl.edu	37	chr2	179479664	179479664	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cttcacgcggtaggcataccAtttgccttcctcaagacctg	8	14	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	179479664	179479664	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.40966	p.W13656R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	181	0	0	131	59	31.05	-	-	-	G	179479664	A	G	179479664	3	3	437	1	0	0	0	0	1	0	0	0	16832	217	8	5	59435	5	TTN	2	179479664	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	9302361	179479664	63719709	15	42334										
TTN	0	genome.wustl.edu	37	chr2	179549456	179549456	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aacctttttttctggaactgGtttctttggctcttctggca	8	9	4	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	179549456	179549456	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.28843	p.P9615A	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	207	0	0	236	36	13.24	-	-	-	C	179549456	G	C	179549456	3	2	437	1	0	0	0	0	1	0	0	0	16832	1261	44	4	71882	4	TTN	2	179549456	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	69792	179549456	63649917	16	42335										
DNAH7	0	genome.wustl.edu	37	chr2	196889189	196889189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gaagttcatctgtcttcttaTcatctcctttctctcgagga	6	11	7	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	196889189	196889189	T	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.707	p.D236V	0.959	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	299	0	0	281	89	24.05	-	-	-	A	196889189	T	A	196889189	3	1	437	1	0	0	0	0	1	0	0	0	4641	1435	50	5	11599	5	DNAH7	2	196889189	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	17339733	196889189	46310184	17	42336										
BZW1	0	genome.wustl.edu	37	chr2	201682958	201682958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tcttttaggaactctttcctGccaataagcaaagtgttgaa	7	8	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	201682958	201682958	G	A	SNP	BZW1	ENST00000409600	human	ensembl	69_37n	1	known	missense	c.661	p.A221T	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153	91	0	0	58	33	36.26	-	-	-	A	201682958	G	A	201682958	3	1	437	1	0	0	0	0	1	0	0	0	1587	1319	46	4	687	4	BZW1	2	201682958	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	4793769	201682958	41516415	18	42337										
KLF7	0	genome.wustl.edu	37	chr2	207945962	207945962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tatgtctcttcatgtggaggGcaagatggtcagacctggaa	13	7	3	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	207945962	207945962	G	C	SNP	KLF7	ENST00000309446	human	ensembl	69_37n	-1	known	missense	c.884	p.A295G	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	307	0	0	222	30	11.9	-	-	-	C	207945962	G	C	207945962	3	2	437	1	0	0	0	0	1	0	0	0	8404	1203	42	4	28	4	KLF7	2	207945962	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	6263004	207945962	35253411	19	42338										
ABCA12	0	genome.wustl.edu	37	chr2	215843072	215843072	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgaaattgctgctgctcacaGataaatcgtcaggagttgag	11	7	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	215843072	215843072	G	T	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.5096	p.S1699Y	0.995	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	269	0	0	232	74	24.18	-	-	-	T	215843072	G	T	215843072	3	4	437	1	0	0	0	0	1	0	0	0	30	942	33	2	2775	2	ABCA12	2	215843072	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	7897110	215843072	27356301	20	42339										
HJURP	0	genome.wustl.edu	37	chr2	234750428	234750428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aatctcttaatgcccctgtcCctttcacaggctcagagcag	7	14	3	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	2	234750428	234750428	C	A	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.998	p.G333V	0.000	pfam_HJURP	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	117	0	0	59	10	14.49	-	-	-	A	234750428	C	A	234750428	3	1	437	1	0	0	0	0	1	0	0	0	7240	623	22	4	1256	4	HJURP	2	234750428	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	18907356	234750428	8448945	21	42340										
SCN10A	0	genome.wustl.edu	37	chr3	38764954	38764954	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gtcatctggttcttccaggtCatctgccagctcagggatct	10	12	7	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	3	38764954	38764954	C	G	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3319	p.D1107H	0.074	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	168	0	0	35	23	39.66	-	-	-	G	38764954	C	G	38764954	3	3	437	1	0	0	0	0	1	0	0	0	14000	826	29	2	2591	2	SCN10A	3	38764954	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		38764954	159257476	22	42341										
MORC1	0	genome.wustl.edu	37	chr3	108819288	108819288	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	taagaccattgccgtattgcCctatgaacttcaaggttgac	8	10	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	3	108819288	108819288	C	G	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.290	p.G97A	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	692	0	0	420	178	29.77	-	-	-	G	108819288	C	G	108819288	3	3	437	1	0	0	0	0	1	0	0	0	9773	623	22	4	2760	4	MORC1	3	108819288	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	70054334	108819288	89203142	23	42342										
WDR52	0	genome.wustl.edu	37	chr3	113063398	113063398	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgtcctttcttccaggtcccTctttttcaaacctgtccaat	4	14	3	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	3	113063398	113063398	T	G	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.3227	p.E1076A	0.977	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	439	0	0	335	46	12.07	-	-	-	G	113063398	T	G	113063398	3	3	437	1	0	0	0	0	1	0	0	0	17401	1551	54	5	2389	5	WDR52	3	113063398	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	4244110	113063398	84959032	24	42343										
HEG1	0	genome.wustl.edu	37	chr3	124732481	124732481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctcagcatcagtgtccagaaCaaccgaagtgttcggcatat	9	11	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	3	124732481	124732481	C	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1942	p.V648F	0.000	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	186	0	0	106	43	28.86	-	-	-	A	124732481	C	A	124732481	3	1	437	1	0	0	0	0	1	0	0	0	7095	478	17	4	2251	4	HEG1	3	124732481	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	11669083	124732481	73289949	25	42344										
FRAS1	0	genome.wustl.edu	37	chr4	79322001	79322001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gctcctggtgccagtgctgaAgaaatcatctacaagattac	9	10	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	4	79322001	79322001	A	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.4089	p.E1363D	0.967	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	243	0	0	205	37	15.29	-	-	-	C	79322001	A	C	79322001	3	2	437	1	0	0	0	0	1	0	0	0	6090	69	3	5	4207	5	FRAS1	4	79322001	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09		79322001	111832275	26	42345										
BANK1	0	genome.wustl.edu	37	chr4	102992432	102992432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgcttttttttgtcttccagAtaaactcaccattgtgcacc	5	11	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	4	102992432	102992432	A	G	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	missense	c.2213	p.N738S	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	228	1	0.43	200	77	27.8	-	-	-	G	102992432	A	G	102992432	3	3	437	1	0	0	0	0	1	0	0	0	1313	347	12	5	2267	5	BANK1	4	102992432	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	23670431	102992432	88161844	27	42346										
MYO10	0	genome.wustl.edu	37	chr5	16680191	16680191	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cggtaacagtgcttgcgcccGtacacggtgacgttccagta	12	12	0	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	16680191	16680191	G	C	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	nonsense	c.4407	p.Y1469*	0.990	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	68	0	0	57	13	18.57	-	-	-	C	16680191	G	C	16680191	4	2	437	1	0	0	0	0	0	1	0	0	10134	1140	40	3	1805	3	MYO10	5	16680191	Nonsense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09		16680191	164235069	28	42347										
SLC45A2	0	genome.wustl.edu	37	chr5	33982475	33982475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cgacacctatcatggtgacaCttatggcccaaaccagcttc	7	14	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	33982475	33982475	C	T	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.428	p.S143N	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	329	1	0.3	267	85	24.15	-	-	-	T	33982475	C	T	33982475	3	4	437	1	0	0	0	0	1	0	0	0	14730	565	20	4	1203	4	SLC45A2	5	33982475	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	17302284	33982475	146932785	29	42348										
HSPB3	0	genome.wustl.edu	37	chr5	53751624	53751624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgtttttgccttcactatggCaaaaatcattttgaggcacc	7	9	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	53751624	53751624	C	T	SNP	HSPB3	ENST00000302005	human	ensembl	69_37n	1	known	missense	c.5	p.A2V	1.000	NULL	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20,prints_Alpha-crystallin/HSP	-	no_errors	HSPB3	HGNC	ENSG00000169271	60	0	0	29	6	17.14	-	-	-	T	53751624	C	T	53751624	3	4	437	1	0	0	0	0	1	0	0	0	7474	710	25	4	7	4	HSPB3	5	53751624	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	19769149	53751624	127163636	30	42349										
TRPC7	0	genome.wustl.edu	37	chr5	135692811	135692811	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctccgtgacctctaggtgctCgttgcccacggccagctgca	11	16	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	135692811	135692811	C	A	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	nonsense	c.265	p.E89*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	53	0	0	8	5	38.46	-	-	-	A	135692811	C	A	135692811	4	1	437	1	0	0	0	0	0	1	0	0	16680	893	31	3	2367	3	TRPC7	5	135692811	Nonsense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	81941187	135692811	45222449	31	42350										
PSD2	0	genome.wustl.edu	37	chr5	139193032	139193032	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctgagcctcacggatgagagCgacagctgcgtcagcttcga	13	12	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	139193032	139193032	C	T	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	silent	c.510	p.S170	0.490	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	52	0	0	19	16	45.71	-	-	-	T	139193032	C	T	139193032	2	4	437	1	0	0	0	0	0	0	0	1	12727	767	27	1		1	PSD2	5	139193032	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	3500221	139193032	41722228	32	42351										
CDHR2	0	genome.wustl.edu	37	chr5	176017576	176017576	+	Missense_Mutation	SNP	A	A	G													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttctccagggctcccaggagAgccaggagtcagacctgtcg							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	176017576	176017576	A	G	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.3427	p.S1143G	0.092	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	155	0	0	34	40	54.05	-	-	-	G	176017576	A	G	176017576	3	3	437	1	0	0	0	0	1	0	0	0	3148	304	11	5	3533	5	CDHR2	5	176017576	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	36824544	176017576	4897684	33	42352	346	2								
CDHR2	0	genome.wustl.edu	37	chr5	176017577	176017577	+	Missense_Mutation	SNP	G	G	C													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tctccagggctcccaggagaGccaggagtcagacctgtcga							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	176017577	176017577	G	C	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.3428	p.S1143T	0.001	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	154	0	0	34	41	54.67	-	-	-	C	176017577	G	C	176017577	3	2	437	1	0	0	0	0	1	0	0	0	3148	971	34	4	3534	4	CDHR2	5	176017577	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	1	176017577	4897683	34	42353	346	2								
SQSTM1	0	genome.wustl.edu	37	chr5	179251050	179251050	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cttgcaccgggggcacaccaAgctcgcattccccagcccct	9	19	0	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	5	179251050	179251050	A	G	SNP	SQSTM1	ENST00000389805	human	ensembl	69_37n	1	known	missense	c.494	p.K165R	1.000	smart_Znf_ZZ,pfscan_Znf_ZZ	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011	29	0	0	4	6	60	-	-	-	G	179251050	A	G	179251050	3	3	437	1	0	0	0	0	1	0	0	0	15221	72	3	5	504	5	SQSTM1	5	179251050	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	3233473	179251050	1664210	35	42354										
HIVEP1	0	genome.wustl.edu	37	chr6	12122400	12122400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	atcatacatatttaaagattCtttccagtttgatttaaaac	3	6	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	12122400	12122400	C	G	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.2372	p.S791C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	96	0	0	67	30	30.93	-	-	-	G	12122400	C	G	12122400	3	3	437	1	0	0	0	0	1	0	0	0	7237	913	32	2	2382	2	HIVEP1	6	12122400	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		12122400	158992667	36	42355										
GPLD1	0	genome.wustl.edu	37	chr6	24476481	24476481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	agaaacggagtccagtgagtGctctcagacacatcatggaa	11	9	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	24476481	24476481	G	T	SNP	GPLD1	ENST00000230036	human	ensembl	69_37n	-1	known	missense	c.258	p.S86R	0.989	prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293	151	1	0.65	95	14	12.84	-	-	-	T	24476481	G	T	24476481	3	4	437	1	0	0	0	0	1	0	0	0	6664	1310	46	4	2393	4	GPLD1	6	24476481	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	12354081	24476481	146638586	37	42356										
KIAA0319	0	genome.wustl.edu	37	chr6	24596446	24596446	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tcatctgagtactcagacatCtcctctaggccccaatcttt	5	14	6	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	24596446	24596446	C	G	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.456	p.E152D	0.046	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	96	0	0	57	13	18.57	-	-	-	G	24596446	C	G	24596446	3	3	437	1	0	0	0	0	1	0	0	0	8220	912	32	2	2838	2	KIAA0319	6	24596446	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	119965	24596446	146518621	38	42357										
TCP11	0	genome.wustl.edu	37	chr6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggagccgctcttgtcttcctINSgggggggtcctgaggtttcg							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	33	0	0	20	4	16.67	-	-	-	G	35108560	-	G	35108559	7	5	437	1	0	1	1	0	0	0	0	0	15808	1580	55	0	1512	0	TCP11	6	35108559	Frame_Shift_Ins	INS	-	TCGA-B6-A0IJ-01A-11W-A050-09	10512113	35108559	136006508	39	42358										
FILIP1	0	genome.wustl.edu	37	chr6	76023420	76023420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tttagcttcttccaaccgaaAtctgtgtctcagttcagctt	6	11	4	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	76023420	76023420	A	G	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.2128	p.F710L	0.253	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	173	0	0	145	20	12.12	-	-	-	G	76023420	A	G	76023420	3	3	437	1	0	0	0	0	1	0	0	0	5940	101	4	5	1521	5	FILIP1	6	76023420	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	40914861	76023420	95091647	40	42359										
HTR1E	0	genome.wustl.edu	37	chr6	87725567	87725567	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cctaagccctccccctagtcAgtgcaccatccagcacgacc	6	20	1	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	87725567	87725567	A	T	SNP	HTR1E	ENST00000305344	human	ensembl	69_37n	1	known	missense	c.515	p.Q172L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HTR1E	HGNC	ENSG00000168830	89	0	0	28	13	31.71	-	-	-	T	87725567	A	T	87725567	3	4	437	1	0	0	0	0	1	0	0	0	7493	188	7	5	517	5	HTR1E	6	87725567	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	11702147	87725567	83389500	41	42360										
PM20D2	0	genome.wustl.edu	37	chr6	89859096	89859096	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tatggcccacccatcacaagAgaatgctgcttatctaccag	7	13	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	89859096	89859096	A	G	SNP	PM20D2	ENST00000275072	human	ensembl	69_37n	1	known	missense	c.578	p.E193G	1.000	pfam_Peptidase_M20,pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281	145	0	0	65	19	22.62	-	-	-	G	89859096	A	G	89859096	3	3	437	1	0	0	0	0	1	0	0	0	12203	304	11	5	584	5	PM20D2	6	89859096	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	2133529	89859096	81255971	42	42361										
ANKRD6	0	genome.wustl.edu	37	chr6	90337405	90337405	+	Frame_Shift_Del	DEL	A	A	-													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cacagagaagcatgagggggAgaaacgacaggtaggaacca							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	90337405	90337405	A	-	DEL	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	frame_shift_del	c.1475	p.E492fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	117	0	0	39	11	22	-	-	-	-	90337405	A	-	90337405	7	5	437	1	0	1	0	1	0	0	0	0	684	304	11	0	1525	0	ANKRD6	6	90337405	Frame_Shift_Del	DEL	A	TCGA-B6-A0IJ-01A-11W-A050-09	478309	90337405	80777662	43	42362										
UTRN	0	genome.wustl.edu	37	chr6	145167956	145167956	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttcagcaaatgttcccagcaGgccacaggtaagagttaatg	10	9	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	6	145167956	145167956	G	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.10286	p.R3429T	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	114	0	0	69	17	19.77	-	-	-	C	145167956	G	C	145167956	3	2	437	1	0	0	0	0	1	0	0	0	17200	1000	35	4	10576	4	UTRN	6	145167956	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	54830551	145167956	25947111	44	42363										
VSTM2A	0	genome.wustl.edu	37	chr7	54636842	54636842	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	agcaaagagcaaatcgcctgTaaaatctacggagcggacag	11	9	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	54636842	54636842	T	C	SNP	VSTM2A	ENST00000404951	human	ensembl	69_37n	1	putative	missense	c.860	p.V287A	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM2A	HGNC	ENSG00000170419	138	0	0	120	63	34.43	-	-	-	C	54636842	T	C	54636842	3	2	437	1	0	0	0	0	1	0	0	0	17326	1653	57	5		5	VSTM2A	7	54636842	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09		54636842	104501821	45	42364										
ABCB1	0	genome.wustl.edu	37	chr7	87178828	87178828	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tctctctccaaccagggtgtCaaatttctaccacagaaaac	5	13	4	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	87178828	87178828	C	G	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.1561	p.D521H	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	360	0	0	145	62	29.81	-	-	-	G	87178828	C	G	87178828	3	3	437	1	0	0	0	0	1	0	0	0	40	826	29	2	2341	2	ABCB1	7	87178828	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	32541986	87178828	71959835	46	42365										
STEAP4	0	genome.wustl.edu	37	chr7	87913447	87913447	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgggggtttcgacttccaaaAacaacagaataaccacactg	8	10	0	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	87913447	87913447	A	T	SNP	STEAP4	ENST00000380079	human	ensembl	69_37n	-1	known	silent	c.138	p.V46	0.642	pfam_NADP_OxRdtase_F420	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP4	HGNC	ENSG00000127954	73	0	0	54	28	34.15	-	-	-	T	87913447	A	T	87913447	2	4	437	1	0	0	0	0	0	0	0	1	15371	1	1	5		5	STEAP4	7	87913447	Silent	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	734619	87913447	71225216	47	42366										
LMTK2	0	genome.wustl.edu	37	chr7	97822389	97822389	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgtcccggttgaaattctctCaactgatgccagaacccaca	7	13	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	97822389	97822389	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	nonsense	c.2612	p.S871*	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	49	0	0	26	7	21.21	-	-	-	G	97822389	C	G	97822389	4	3	437	1	0	0	0	0	0	1	0	0	8915	838	29	2	2654	2	LMTK2	7	97822389	Nonsense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	9908942	97822389	61316274	48	42367										
ZCWPW1	0	genome.wustl.edu	37	chr7	100013966	100013966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgcttaaggtgagtctattgGatttcttcttagagggtgca	12	5	3	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	100013966	100013966	G	T	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.593	p.S198Y	0.000	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	84	0	0	103	28	21.37	-	-	-	T	100013966	G	T	100013966	3	4	437	1	0	0	0	0	1	0	0	0	17693	1174	41	2	1401	2	ZCWPW1	7	100013966	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	2191577	100013966	59124697	49	42368										
ASZ1	0	genome.wustl.edu	37	chr7	117066908	117066908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	accagaatctaggagctcctGgaccaatgaaacatctccga	8	12	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	117066908	117066908	G	T	SNP	ASZ1	ENST00000284629	human	ensembl	69_37n	-1	known	missense	c.187	p.Q63K	0.009	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ASZ1	HGNC	ENSG00000154438	92	0	0	90	11	10.89	-	-	-	T	117066908	G	T	117066908	3	4	437	1	0	0	0	0	1	0	0	0	1073	1357	47	4	1288	4	ASZ1	7	117066908	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	17052942	117066908	42071755	50	42369										
MLL3	0	genome.wustl.edu	37	chr7	152012412	152012412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ccccacagtaacaaaaagcgCagagctgttcactagtaaaa	7	11	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	7	152012412	152012412	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.401	p.C134Y	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	176	1	0.56	101	58	36.48	-	-	-	T	152012412	C	T	152012412	3	4	437	1	0	0	0	0	1	0	0	0	9693	710	25	4	14558	4	MLL3	7	152012412	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	34945504	152012412	7126251	51	42370										
LONRF1	0	genome.wustl.edu	37	chr8	12594303	12594303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	acatacagacttcattgggaGtttctattaaaacaaagaca	6	7	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	12594303	12594303	G	A	SNP	LONRF1	ENST00000398246	human	ensembl	69_37n	-1	known	missense	c.1358	p.T453I	0.566	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359	108	0	0	67	16	19.28	-	-	-	A	12594303	G	A	12594303	3	1	437	1	0	0	0	0	1	0	0	0	8960	1029	36	4	991	4	LONRF1	8	12594303	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09		12594303	133769719	52	42371										
DOCK5	0	genome.wustl.edu	37	chr8	25149578	25149578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttccgccagctgcagcagatGacgtacagcctgatcgagtg	12	12	0	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	25149578	25149578	G	A	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.360	p.M120I	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	151	0	0	70	30	30	-	-	-	A	25149578	G	A	25149578	3	1	437	1	0	0	0	0	1	0	0	0	4725	1290	45	2	382	2	DOCK5	8	25149578	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	12555275	25149578	121214444	53	42372										
PXDNL	0	genome.wustl.edu	37	chr8	52384808	52384808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cgcccggcaggtgaagtagaCggtatttcctgatggtacct	13	10	0	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	52384808	52384808	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.751	p.V251I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	198	0	0	108	36	25	-	-	-	T	52384808	C	T	52384808	3	4	437	1	0	0	0	0	1	0	0	0	12931	536	19	1	3704	1	PXDNL	8	52384808	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	27235230	52384808	93979214	54	42373										
PREX2	0	genome.wustl.edu	37	chr8	69033181	69033181	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	caacaggaaatggaaccaaaGctgagttgtccaaaaaggct	10	8	0	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	69033181	69033181	G	C	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.3621	p.K1207N	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	144	0	0	75	13	14.77	-	-	-	C	69033181	G	C	69033181	3	2	437	1	0	0	0	0	1	0	0	0	12558	962	34	4	3968	4	PREX2	8	69033181	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	16648373	69033181	77330841	55	42374										
ATP6V1C1	0	genome.wustl.edu	37	chr8	104063354	104063354	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aagcagtccctgaaaaatatTtctgaaataattgccaaggt	7	7	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	104063354	104063354	T	C	SNP	ATP6V1C1	ENST00000395862	human	ensembl	69_37n	1	known	silent	c.363	p.I121	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097	130	0	0	163	49	23.11	-	-	-	C	104063354	T	C	104063354	2	2	437	1	0	0	0	0	0	0	0	1	1184	1829	64	5		5	ATP6V1C1	8	104063354	Silent	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	35030173	104063354	42300668	56	42375										
ZFPM2	0	genome.wustl.edu	37	chr8	106646518	106646518	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gtgctgactgctggtcccaaGtggttgctggatgtgacttg	15	8	0	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	106646518	106646518	G	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.465	p.K155N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	207	0	0	113	41	26.62	-	-	-	T	106646518	G	T	106646518	3	4	437	1	0	0	0	0	1	0	0	0	17754	1020	36	4	483	4	ZFPM2	8	106646518	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	2583164	106646518	39717504	57	42376										
ASAP1	0	genome.wustl.edu	37	chr8	131172126	131172126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	atacccgtcacttttctttaGcaggtaccccttcttttcac	4	14	4	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	8	131172126	131172126	G	A	SNP	ASAP1	ENST00000524124	human	ensembl	69_37n	-1	novel	missense	c.455	p.A152V	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ASAP1	HGNC	ENSG00000153317	356	0	0	407	59	12.66	-	-	-	A	131172126	G	A	131172126	3	1	437	1	0	0	0	0	1	0	0	0	1014	962	34	4	2471	4	ASAP1	8	131172126	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	24525608	131172126	15191896	58	42377										
IFNA14	0	genome.wustl.edu	37	chr9	21239901	21239901	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgacttgcagctgagcaccaCcagggccatcattaaagcaa	9	12	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	21239901	21239901	C	A	SNP	IFNA14	ENST00000380222	human	ensembl	69_37n	-1	known	missense	c.34	p.V12L	0.096	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA14	HGNC	ENSG00000228083	149	0	0	95	15	13.64	-	-	-	A	21239901	C	A	21239901	3	1	437	1	0	0	0	0	1	0	0	0	7588	507	18	4	539	4	IFNA14	9	21239901	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		21239901	119973530	59	42378										
C9orf11	0	genome.wustl.edu	37	chr9	27289729	27289729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ccactgctgttccatttataGctgttaaaacaaattggggt	8	8	0	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	27289729	27289729	G	T	SNP	C9orf11	ENST00000380032	human	ensembl	69_37n	-1	known	missense	c.422	p.A141D	0.906	NULL	NULL	-	no_errors	C9orf11	HGNC	ENSG00000120160	228	0	0	108	51	32.08	-	-	-	T	27289729	G	T	27289729	3	4	437	1	0	0	0	0	1	0	0	0	2473	985	34	4	474	4	C9orf11	9	27289729	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	6049828	27289729	113923702	60	42379										
KIAA1045	0	genome.wustl.edu	37	chr9	34971433	34971433	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctgccagggtcccgccgtggCactgtagagggctccgtcca	14	15	0	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	34971433	34971433	C	G	SNP	KIAA1045	ENST00000242315	human	ensembl	69_37n	1	known	silent	c.138	p.G46	0.423	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733	114	0	0	57	12	17.39	-	-	-	G	34971433	C	G	34971433	2	3	437	1	0	0	0	0	0	0	0	1	8259	697	25	4		4	KIAA1045	9	34971433	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	7681704	34971433	106241998	61	42380										
XPA	0	genome.wustl.edu	37	chr9	100437634	100437634	+	RNA	DEL	T	T	-													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttcatctatgaagatgttgcTtttttttttgaattttgaaa							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936	21	0	0	20	3	13.04	-	-	-	-	100437634	T	-	100437634	6	5	437	0	1	1	0	1	0	0	0	0	17537	1624	56	0		0	XPA	9	100437634	RNA	DEL	T	TCGA-B6-A0IJ-01A-11W-A050-09	65466201	100437634	40775797	62	42381										
TNC	0	genome.wustl.edu	37	chr9	117825311	117825311	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	atttccatggaacgcaggctGccaggaaccgtgagattgtg	13	9	0	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	117825311	117825311	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.3918	p.G1306	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	116	0	0	59	8	11.94	-	-	-	A	117825311	G	A	117825311	2	1	437	1	0	0	0	0	0	0	0	1	16365	1306	46	4		4	TNC	9	117825311	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	17387677	117825311	23388120	63	42382										
TRAF1	0	genome.wustl.edu	37	chr9	123671534	123671534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ccggaagggccacggcagcaGcgcatcatactcccctctca	10	17	2	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	9	123671534	123671534	G	C	SNP	TRAF1	ENST00000373887	human	ensembl	69_37n	-1	known	missense	c.1006	p.L336V	0.997	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	-	no_errors	TRAF1	HGNC	ENSG00000056558	70	0	0	16	14	46.67	-	-	-	C	123671534	G	C	123671534	3	2	437	1	0	0	0	0	1	0	0	0	16533	962	34	4	252	4	TRAF1	9	123671534	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	5846223	123671534	17541897	64	42383										
EPC1	0	genome.wustl.edu	37	chr10	32576025	32576025	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	catagagaattgtatttgtaCctgggagagaggttcttcgt	12	5	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	10	32576025	32576025	C	A	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	splice_site	c.1152+1	e7+1	1.000	-	-	-	no_errors	EPC1	HGNC	ENSG00000120616	130	0	0	110	14	11.29	-	-	-	A	32576025	C	A	32576025	5	1	437	1	0	0	0	0	0	0	1	0	5197	521	18	4	1393	4	EPC1	10	32576025	Splice_Site	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		32576025	102958722	65	42384										
FAM21A	0	genome.wustl.edu	37	chr10	51887518	51887518	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggccggtgtgagttttgatcTtccagctcaggcagacacct	12	11	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	10	51887518	51887518	T	G	SNP	FAM21A	ENST00000282633	human	ensembl	69_37n	1	known	missense	c.3050	p.L1017R	0.785	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290	30	0	0	23	4	14.81	-	-	-	G	51887518	T	G	51887518	3	3	437	1	0	0	0	0	1	0	0	0	5582	1609	56	5	3160	5	FAM21A	10	51887518	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	19311493	51887518	83647229	66	42385										
HIF1AN	0	genome.wustl.edu	37	chr10	102296311	102296311	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttgtactatgatgagaagaaGatggccaatttccagaactt	9	6	0	5			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	10	102296311	102296311	G	A	SNP	HIF1AN	ENST00000299163	human	ensembl	69_37n	1	known	silent	c.321	p.K107	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HIF1AN	HGNC	ENSG00000166135	101	0	0	47	33	40.74	-	-	-	A	102296311	G	A	102296311	2	1	437	1	0	0	0	0	0	0	0	1	7155	933	33	2		2	HIF1AN	10	102296311	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	50408793	102296311	33238436	67	42386										
NRAP	0	genome.wustl.edu	37	chr10	115348779	115348779	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ttgacgtgcagaatctcagtGgcatctgggttcacctcccc	10	13	3	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	10	115348779	115348779	G	T	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	silent	c.5172	p.A1724	0.951	NULL	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	108	0	0	31	20	39.22	-	-	-	T	115348779	G	T	115348779	2	4	437	1	0	0	0	0	0	0	0	1	10711	1335	47	4		4	NRAP	10	115348779	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	13052468	115348779	20185968	68	42387										
DNHD1	0	genome.wustl.edu	37	chr11	6566067	6566067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	accagtatcgaaccctgatgCgcatctctgtagctgacccc	8	15	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	11	6566067	6566067	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.3898	p.R1300C	0.077	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	161	0	0	37	28	43.08	-	-	-	T	6566067	C	T	6566067	3	4	437	1	0	0	0	0	1	0	0	0	4703	768	27	1	3981	1	DNHD1	11	6566067	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		6566067	128440449	69	42388										
OR4X2	0	genome.wustl.edu	37	chr11	48266965	48266965	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	acttctttggtggcactgagAttttcctgctcactgtgatg	10	9	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	11	48266965	48266965	A	T	SNP	OR4X2	ENST00000302329	human	ensembl	69_37n	1	known	missense	c.310	p.I104F	0.268	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X2	HGNC	ENSG00000172208	126	1	0.79	97	25	20.49	-	-	-	T	48266965	A	T	48266965	3	4	437	1	0	0	0	0	1	0	0	0	11158	333	12	5	312	5	OR4X2	11	48266965	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	41700898	48266965	86739551	70	42389										
FADS2	0	genome.wustl.edu	37	chr11	61615738	61615738	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctgcacgtgtttgttctgggCgaatggcagcccatcgaggt	14	10	1	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	11	61615738	61615738	C	G	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	silent	c.726	p.G242	0.953	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	118	0	0	61	18	22.78	-	-	-	G	61615738	C	G	61615738	2	3	437	1	0	0	0	0	0	0	0	1	5406	755	27	3		3	FADS2	11	61615738	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	13348773	61615738	73390778	71	42390										
SLC22A25	0	genome.wustl.edu	37	chr11	62951206	62951206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cagcattcttcattccattcCtgtgtgcagcttttctaagt	6	11	3	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	11	62951206	62951206	C	T	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	missense	c.914	p.R305K	0.006	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	324	0	0	258	146	36.14	-	-	-	T	62951206	C	T	62951206	3	4	437	1	0	0	0	0	1	0	0	0	14543	681	24	4	749	4	SLC22A25	11	62951206	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	1335468	62951206	72055310	72	42391										
CHD4	0	genome.wustl.edu	37	chr12	6709817	6709817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	atcgaagtcagattccacatCtaagtcatcatcctcactct	4	13	6	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	6709817	6709817	C	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.946	p.D316H	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	105	0	0	70	45	39.13	-	-	-	G	6709817	C	G	6709817	3	3	437	1	0	0	0	0	1	0	0	0	3356	913	32	2	4924	2	CHD4	12	6709817	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		6709817	127142078	73	42392										
CLEC1A	0	genome.wustl.edu	37	chr12	10233932	10233932	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gacttgaagagattgcaactCttgggacgtatttcctaatc	9	8	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	10233932	10233932	C	G	SNP	CLEC1A	ENST00000315330	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	0.014	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048	224	1	0.44	277	32	10.36	-	-	-	G	10233932	C	G	10233932	3	3	437	1	0	0	0	0	1	0	0	0	3535	922	32	2	563	2	CLEC1A	12	10233932	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	3524115	10233932	123617963	74	42393										
PRB3	0	genome.wustl.edu	37	chr12	11420173	11420173	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tctgtgtggtctgcccccttGaggaggtggaggtggtccct	16	10	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	11420173	11420173	G	A	SNP	PRB3	ENST00000381842	human	ensembl	69_37n	-1	known	nonsense	c.883	p.Q295*	0.003	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	614	0	0	426	199	31.74	-	-	-	A	11420173	G	A	11420173	4	1	437	1	0	0	0	0	0	1	0	0	12525	1299	45	2	50	2	PRB3	12	11420173	Nonsense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	1186241	11420173	122431722	75	42394										
PLCZ1	0	genome.wustl.edu	37	chr12	18837202	18837202	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgtgaatgtttcattccatcTtggactaaaagctgaaatat	7	6	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	18837202	18837202	T	A	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	nonsense	c.1603	p.R535*	0.958	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	150	0	0	140	26	15.66	-	-	-	A	18837202	T	A	18837202	4	1	437	1	0	0	0	0	0	1	0	0	12118	1617	56	5	231	5	PLCZ1	12	18837202	Nonsense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	7417029	18837202	115014693	76	42395										
ST8SIA1	0	genome.wustl.edu	37	chr12	22440177	22440177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tccccataggggaattcattTtagtcatagcaaagagatgg	10	7	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	22440177	22440177	T	A	SNP	ST8SIA1	ENST00000396037	human	ensembl	69_37n	-1	known	missense	c.287	p.K96I	0.997	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728	120	0	0	64	27	29.67	-	-	-	A	22440177	T	A	22440177	3	1	437	1	0	0	0	0	1	0	0	0	15322	1841	64	5	799	5	ST8SIA1	12	22440177	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	3602975	22440177	111411718	77	42396										
SLC4A8	0	genome.wustl.edu	37	chr12	51851241	51851241	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	catcatcagaatgaaaagaaGagaaacaacctcattcccat	5	10	3	4			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	51851241	51851241	G	T	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	missense	c.681	p.K227N	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	256	0	0	169	51	23.18	-	-	-	T	51851241	G	T	51851241	3	4	437	1	0	0	0	0	1	0	0	0	14748	933	33	2	703	2	SLC4A8	12	51851241	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	29411064	51851241	82000654	78	42397										
RPL41	0	genome.wustl.edu	37	chr12	56511292	56511292	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gcgcaaaagaagaaagatgaGgcagaggtccaagtaaaccg	13	7	0	5			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	56511292	56511292	G	C	SNP	RPL41	ENST00000501597	human	ensembl	69_37n	1	known	missense	c.62	p.R21T	1.000	pfam_Ribosomal_L41	pfam_Ribosomal_L41	-	no_errors	RPL41	HGNC	ENSG00000229117	140	0	0	67	63	48.46	-	-	-	C	56511292	G	C	56511292	3	2	437	1	0	0	0	0	1	0	0	0	13682	1000	35	4	72	4	RPL41	12	56511292	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	4660051	56511292	77340603	79	42398										
SRGAP1	0	genome.wustl.edu	37	chr12	64502729	64502729	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	taggaatagataatctctatGagagggcgcttcacatccgc	10	9	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	12	64502729	64502729	G	C	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.1831	p.E611Q	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	219	0	0	101	71	41.28	-	-	-	C	64502729	G	C	64502729	3	2	437	1	0	0	0	0	1	0	0	0	15236	1291	45	2	1893	2	SRGAP1	12	64502729	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	7991437	64502729	69349166	80	42399										
SLC15A1	0	genome.wustl.edu	37	chr13	99339888	99339888	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gaagaccacttcgccacaggTgagaagaaaatactgcggga	12	9	0	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	13	99339888	99339888	T	A	SNP	SLC15A1	ENST00000376503	human	ensembl	69_37n	-1	known	missense	c.1774	p.T592S	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	111	0	0	66	42	38.53	-	-	-	A	99339888	T	A	99339888	3	1	437	1	0	0	0	0	1	0	0	0	14487	1696	59	5	364	5	SLC15A1	13	99339888	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09		99339888	15829990	81	42400										
MDP1	0	genome.wustl.edu	37	chr14	24683340	24683340	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aagattcattccattctggaTgtgaatgcaggtaacaccta	8	8	2	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	14	24683340	24683340	T	C	SNP	MDP1	ENST00000288087	human	ensembl	69_37n	-1	known	missense	c.421	p.I141V	0.135	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	-	no_errors	MDP1	HGNC	ENSG00000213920	64	0	0	32	28	46.67	-	-	-	C	24683340	T	C	24683340	3	2	437	1	0	0	0	0	1	0	0	0	9487	1464	51	5	113	5	MDP1	14	24683340	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09		24683340	82666200	82	42401										
WDHD1	0	genome.wustl.edu	37	chr14	55411098	55411098	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aatcgaatcattccttctttTattatgtctgcttcatctga	4	9	5	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	14	55411098	55411098	T	G	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	silent	c.3141	p.I1047	1.000	superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	253	1	0.39	205	36	14.94	-	-	-	G	55411098	T	G	55411098	2	3	437	1	0	0	0	0	0	0	0	1	17368	1744	61	5		5	WDHD1	14	55411098	Silent	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	30727758	55411098	51938442	83	42402										
C14orf105	0	genome.wustl.edu	37	chr14	57947351	57947351	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tttcatcaggcaacatggttAgaaggtcatggtcatcattc	9	8	5	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	14	57947351	57947351	A	G	SNP	C14orf105	ENST00000216445	human	ensembl	69_37n	-1	known	missense	c.617	p.L206P	0.002	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557	350	0	0	244	53	17.85	-	-	-	G	57947351	A	G	57947351	3	3	437	1	0	0	0	0	1	0	0	0	1749	420	15	5	281	5	C14orf105	14	57947351	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	2536253	57947351	49402189	84	42403										
GOLGA5	0	genome.wustl.edu	37	chr14	93275676	93275676	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gcaagagcaagagttgaaaaGtggaatgctgaccattcaaa	11	6	1	4			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	14	93275676	93275676	G	C	SNP	GOLGA5	ENST00000163416	human	ensembl	69_37n	1	known	missense	c.804	p.K268N	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455	40	0	0	20	12	37.5	-	-	-	C	93275676	G	C	93275676	3	2	437	1	0	0	0	0	1	0	0	0	6608	1020	36	4	814	4	GOLGA5	14	93275676	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	35328325	93275676	14073864	85	42404										
RAD51	0	genome.wustl.edu	37	chr15	41022086	41022086	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gtaatcactaatcaggtggtAgctcaagtggatggagcagc	13	7	3	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	15	41022086	41022086	A	G	SNP	RAD51	ENST00000382643	human	ensembl	69_37n	1	known	silent	c.813	p.V271	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180	95	0	0	43	26	37.68	-	-	-	G	41022086	A	G	41022086	2	3	437	1	0	0	0	0	0	0	0	1	13068	407	15	5		5	RAD51	15	41022086	Silent	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09		41022086	61509306	86	42405										
TGM7	0	genome.wustl.edu	37	chr15	43584967	43584967	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cgggtaagtcacactgtgacCttggccctgagagatctcta	11	11	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	15	43584967	43584967	C	A	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	missense	c.379	p.G127C	0.003	superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	29	0	0	26	7	21.21	-	-	-	A	43584967	C	A	43584967	3	1	437	1	0	0	0	0	1	0	0	0	15930	681	24	4	1797	4	TGM7	15	43584967	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	2562881	43584967	58946425	87	42406										
EDC3	0	genome.wustl.edu	37	chr15	74925172	74925172	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tctatgctgagtactggtgcCcggttctggttggcccaggc	14	11	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	15	74925172	74925172	C	G	SNP	EDC3	ENST00000315127	human	ensembl	69_37n	-1	known	silent	c.1308	p.R436	1.000	pfam_YjeF_N,superfamily_YjeF_N	pfam_YjeF_N,pfam_FDF_dom,superfamily_YjeF_N	-	no_errors	EDC3	HGNC	ENSG00000179151	107	0	0	28	27	49.09	-	-	-	G	74925172	C	G	74925172	2	3	437	1	0	0	0	0	0	0	0	1	4942	610	22	4		4	EDC3	15	74925172	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	31340205	74925172	27606220	88	42407										
TTLL13	0	genome.wustl.edu	37	chr15	90799441	90799441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tatctgcaagccagacagtgGctgtcagggacgtggcatct	13	10	3	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	15	90799441	90799441	G	A	SNP	TTLL13	ENST00000438251	human	ensembl	69_37n	1	known	missense	c.617	p.G206D	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL13	HGNC	ENSG00000213471	120	0	0	29	30	50.85	-	-	-	A	90799441	G	A	90799441	3	1	437	1	0	0	0	0	1	0	0	0	16823	1203	42	4	635	4	TTLL13	15	90799441	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	15874269	90799441	11731951	89	42408										
MCTP2	0	genome.wustl.edu	37	chr15	94882595	94882595	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aaagtcatatataagaacttGaacccagtatgggatgagat	9	5	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	15	94882595	94882595	G	C	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	missense	c.714	p.L238F	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	74	0	0	66	9	12	-	-	-	C	94882595	G	C	94882595	3	2	437	1	0	0	0	0	1	0	0	0	9472	1281	45	2	728	2	MCTP2	15	94882595	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	4083154	94882595	7648797	90	42409										
GRIN2A	0	genome.wustl.edu	37	chr16	10032157	10032157	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	agcaagatgacagaagagtgGatcttcttcagctggacttg	12	7	3	4			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	10032157	10032157	G	C	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.666	p.I222M	1.000	pfam_ANF_lig-bd_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	79	0	0	43	9	17.31	-	-	-	C	10032157	G	C	10032157	3	2	437	1	0	0	0	0	1	0	0	0	6830	1164	41	2	3772	2	GRIN2A	16	10032157	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09		10032157	80322596	91	42410										
SMG1	0	genome.wustl.edu	37	chr16	18863734	18863734	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aggtgcctgtactgaagacaGgtgatacaactgtcccaaaa	10	9	0	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	18863734	18863734	G	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.4819	p.L1607	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	181	0	0	90	21	18.92	-	-	-	A	18863734	G	A	18863734	2	1	437	1	0	0	0	0	0	0	0	1	14884	991	35	4		4	SMG1	16	18863734	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	8831577	18863734	71491019	92	42411										
IL4R	0	genome.wustl.edu	37	chr16	27367189	27367189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	cagcgtttcctgcattgtcaTcctggccgtctgcctgttgt	10	13	2	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	27367189	27367189	T	A	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.731	p.I244N	0.655	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	149	0	0	52	9	14.75	-	-	-	A	27367189	T	A	27367189	3	1	437	1	0	0	0	0	1	0	0	0	7752	1435	50	5	771	5	IL4R	16	27367189	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	8503455	27367189	62987564	93	42412										
ZNF646	0	genome.wustl.edu	37	chr16	31092572	31092572	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctggtcaagggaaagcccagGaggccccatcagaaaccccc	11	15	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	31092572	31092572	G	C	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.4927	p.E1643Q	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	70	0	0	21	16	43.24	-	-	-	C	31092572	G	C	31092572	3	2	437	1	0	0	0	0	1	0	0	0	18158	1175	41	2	4929	2	ZNF646	16	31092572	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	3725383	31092572	59262181	94	42413										
COG4	0	genome.wustl.edu	37	chr16	70516652	70516652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ctcctcgatgttgtgggagaCggagaaaaagctgttgatcc	13	8	0	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	70516652	70516652	C	T	SNP	COG4	ENST00000323786	human	ensembl	69_37n	-1	known	missense	c.1900	p.V634I	0.940	NULL	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051	81	0	0	29	6	16.67	-	-	-	T	70516652	C	T	70516652	3	4	437	1	0	0	0	0	1	0	0	0	3690	536	19	1	489	1	COG4	16	70516652	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	39424080	70516652	19838101	95	42414										
HYDIN	0	genome.wustl.edu	37	chr16	70969958	70969958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gctcatcctcttccttttgtCgctccagctcctgctgtagc	7	16	2	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	16	70969958	70969958	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.7052	p.R2351Q	0.893	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	27	0	0	15	6	28.57	-	-	-	T	70969958	C	T	70969958	3	4	437	1	0	0	0	0	1	0	0	0	7521	884	31	1	8478	1	HYDIN	16	70969958	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	453306	70969958	19384795	96	42415										
FAM64A	0	genome.wustl.edu	37	chr17	6348481	6348481	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tccgtgcgccggagatctctCcagcaccaggagcagctgga	13	14	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	6348481	6348481	C	G	SNP	FAM64A	ENST00000250056	human	ensembl	69_37n	1	known	silent	c.51	p.L17	0.001	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195	57	0	0	13	12	48	-	-	-	G	6348481	C	G	6348481	2	3	437	1	0	0	0	0	0	0	0	1	5643	842	30	2		2	FAM64A	17	6348481	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		6348481	74846729	97	42416										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	367	1	0.27	161	124	43.51	-	-	-	C	7578190	T	C	7578190	3	2	437	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	1229709	7578190	73617020	98	42417										
MYH4	0	genome.wustl.edu	37	chr17	10355263	10355263	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	caagttaatgaagaccttggCtttggagacagtctccatgt	10	8	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	10355263	10355263	C	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.3733	p.A1245S	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	91	0	0	50	13	20.31	-	-	-	A	10355263	C	A	10355263	3	1	437	1	0	0	0	0	1	0	0	0	10109	797	28	4	2142	4	MYH4	17	10355263	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	2777073	10355263	70839947	99	42418										
DNAH9	0	genome.wustl.edu	37	chr17	11687830	11687830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aattccactacatcttcaacCtcagagattttgccaacatt	3	12	3	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	11687830	11687830	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.8035	p.L2679F	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	177	1	0.56	53	32	37.65	-	-	-	T	11687830	C	T	11687830	3	4	437	1	0	0	0	0	1	0	0	0	4643	681	24	4	8197	4	DNAH9	17	11687830	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	1332567	11687830	69507380	100	42419										
SLFN5	0	genome.wustl.edu	37	chr17	33592271	33592271	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gatggcccaggagttctctgGatctttctggactactttca	10	10	4	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	33592271	33592271	G	C	SNP	SLFN5	ENST00000299977	human	ensembl	69_37n	1	known	missense	c.2040	p.W680C	1.000	pfam_DUF2075	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN5	HGNC	ENSG00000166750	131	0	0	63	36	36.36	-	-	-	C	33592271	G	C	33592271	3	2	437	1	0	0	0	0	1	0	0	0	14826	1183	41	2	2054	2	SLFN5	17	33592271	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	21904441	33592271	47602939	101	42420										
SDK2	0	genome.wustl.edu	37	chr17	71375645	71375645	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggcccctcacccacagcgttGtacacgctcatccgtatctc	7	18	3	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	17	71375645	71375645	G	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	nonsense	c.4806	p.Y1602*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	47	0	0	17	7	29.17	-	-	-	T	71375645	G	T	71375645	4	4	437	1	0	0	0	0	0	1	0	0	14057	1372	48	4	1756	4	SDK2	17	71375645	Nonsense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	37783374	71375645	9819565	102	42421										
NDC80	0	genome.wustl.edu	37	chr18	2601425	2601425	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aggaactcctgaatgaaactGaagaagaaattaataaagcc	8	6	0	5			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	18	2601425	2601425	G	C	SNP	NDC80	ENST00000261597	human	ensembl	69_37n	1	known	missense	c.1405	p.E469Q	1.000	superfamily_t-SNARE	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986	89	0	0	81	16	16.49	-	-	-	C	2601425	G	C	2601425	3	2	437	1	0	0	0	0	1	0	0	0	10314	1291	45	2	1451	2	NDC80	18	2601425	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09		2601425	75475823	103	42422										
MC2R	0	genome.wustl.edu	37	chr18	13885460	13885460	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	caaaaccacacgaggacagtCggaattatttcttgctgtgt	9	9	1	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	18	13885460	13885460	C	G	SNP	MC2R	ENST00000327606	human	ensembl	69_37n	-1	known	missense	c.58	p.D20H	0.997	prints_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231	149	0	0	111	28	20.14	-	-	-	G	13885460	C	G	13885460	3	3	437	1	0	0	0	0	1	0	0	0	9435	884	31	3	839	3	MC2R	18	13885460	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	11284035	13885460	64191788	104	42423										
SLC39A6	0	genome.wustl.edu	37	chr18	33691090	33691090	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tatccacatagaaacattttCagcataatgaccaatgaaaa	4	8	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	18	33691090	33691090	C	G	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	missense	c.2047	p.E683Q	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	125	0	0	58	39	39.8	-	-	-	G	33691090	C	G	33691090	3	3	437	1	0	0	0	0	1	0	0	0	14711	835	29	2	240	2	SLC39A6	18	33691090	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	19805630	33691090	44386158	105	42424										
FHOD3	0	genome.wustl.edu	37	chr18	34205515	34205516	+	Frame_Shift_Ins	INS	-	-	C													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gcgatgagaccacggagccaINSccccccagtgggtgccggga							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	18	34205515	34205516	-	C	INS	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	frame_shift_ins	c.999_1000	p.S335fs	0.121:0.999	superfamily_ARM-type_fold	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	32	0	0	11	2	15.38	-	-	-	C	34205516	-	C	34205515	7	5	437	1	0	1	1	0	0	0	0	0	5929	146	6	0	1037	0	FHOD3	18	34205515	Frame_Shift_Ins	INS	-	TCGA-B6-A0IJ-01A-11W-A050-09	514425	34205515	43871733	106	42425										
TLE6	0	genome.wustl.edu	37	chr19	2993572	2993572	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	catcctgagcgtcaagttctCcccctttggtaagcggctgg	11	13	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	2993572	2993572	C	G	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	missense	c.1529	p.S510C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	70	0	0	15	13	46.43	-	-	-	G	2993572	C	G	2993572	3	3	437	1	0	0	0	0	1	0	0	0	16037	855	30	2	1583	2	TLE6	19	2993572	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09		2993572	56135411	107	42426										
ILVBL	0	genome.wustl.edu	37	chr19	15228790	15228790	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tcttgctgctgtggctgaggAcacggccataggataggcgg	16	9	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	15228790	15228790	A	T	SNP	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	missense	c.1088	p.V363D	1.000	pfam_Thiamin_PyroP_enz_cen_dom	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	33	0	0	24	5	17.24	-	-	-	T	15228790	A	T	15228790	3	4	437	1	0	0	0	0	1	0	0	0	7769	275	10	5	838	5	ILVBL	19	15228790	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	12235218	15228790	43900193	108	42427										
NOTCH3	0	genome.wustl.edu	37	chr19	15276281	15276281	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gatcagtgccgttgagccatCtgccatgcgggcatccaagt	12	12	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	15276281	15276281	C	G	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.5713	p.D1905H	0.996	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	110	0	0	43	17	28.33	-	-	-	G	15276281	C	G	15276281	3	3	437	1	0	0	0	0	1	0	0	0	10622	913	32	2	1264	2	NOTCH3	19	15276281	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	47491	15276281	43852702	109	42428										
CYP4F11	0	genome.wustl.edu	37	chr19	16038102	16038102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gaaggcaggcgtcaacatccGacggtggcggctccacttgt	14	12	1	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	16038102	16038102	G	A	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.445	p.R149W	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	95	0	0	44	29	39.73	-	-	-	A	16038102	G	A	16038102	3	1	437	1	0	0	0	0	1	0	0	0	4217	1057	37	1	1165	1	CYP4F11	19	16038102	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	761821	16038102	43090881	110	42429										
ZNF101	0	genome.wustl.edu	37	chr19	19790898	19790898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tagtggagaaaagccatatgAatgtacaaggtgtggtaaag	13	3	0	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	19790898	19790898	A	T	SNP	ZNF101	ENST00000318110	human	ensembl	69_37n	1	known	missense	c.1100	p.E367V	0.031	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896	135	0	0	120	65	35.14	-	-	-	T	19790898	A	T	19790898	3	4	437	1	0	0	0	0	1	0	0	0	17810	246	9	5	1114	5	ZNF101	19	19790898	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09	3752796	19790898	39338085	111	42430										
ZNF208	0	genome.wustl.edu	37	chr19	22155945	22155945	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gtagggcttctctccagcatGaattgccttatgtgtagtaa	10	8	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	22155945	22155945	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.1891	p.H631Y	0.854	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	218	0	0	235	41	14.86	-	-	-	A	22155945	G	A	22155945	3	1	437	1	0	0	0	0	1	0	0	0	17862	1290	45	2	1955	2	ZNF208	19	22155945	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	2365047	22155945	36973038	112	42431										
THAP8	0	genome.wustl.edu	37	chr19	36526357	36526357	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gatccttatgcactggggatCcgagtgtccaggagctccgg	14	11	0	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	36526357	36526357	C	T	SNP	THAP8	ENST00000292894	human	ensembl	69_37n	-1	known	silent	c.810	p.R270	0.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP8	HGNC	ENSG00000161277	103	0	0	94	19	16.81	-	-	-	T	36526357	C	T	36526357	2	4	437	1	0	0	0	0	0	0	0	1	15945	842	30	2		2	THAP8	19	36526357	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	14370412	36526357	22602626	113	42432										
PLEKHG2	0	genome.wustl.edu	37	chr19	39914678	39914678	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgcacctccaggtgccggctCttacaactttctctgatcaa	7	14	3	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	39914678	39914678	C	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.2905	p.L969I	0.016	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	74	0	0	31	11	26.19	-	-	-	A	39914678	C	A	39914678	3	1	437	1	0	0	0	0	1	0	0	0	12143	913	32	2	2975	2	PLEKHG2	19	39914678	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	3388321	39914678	19214305	114	42433										
PSG11	0	genome.wustl.edu	37	chr19	43529167	43529167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tggctgggcttcaatcatgaCttgggcagtggtaggcaagt	15	7	2	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	43529167	43529167	C	A	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	missense	c.106	p.V36F	0.031	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	337	0	0	152	178	53.78	-	-	-	A	43529167	C	A	43529167	3	1	437	1	0	0	0	0	1	0	0	0	12734	565	20	4	917	4	PSG11	19	43529167	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	3614489	43529167	15599816	115	42434										
KLK1	0	genome.wustl.edu	37	chr19	51323272	51323272	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	attttgaggtccacacactgGagatcatctggaaatgagac	10	8	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	51323272	51323272	G	A	SNP	KLK1	ENST00000301420	human	ensembl	69_37n	-1	known	silent	c.516	p.L172	0.895	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK1	HGNC	ENSG00000167748	50	0	0	20	10	33.33	-	-	-	A	51323272	G	A	51323272	2	1	437	1	0	0	0	0	0	0	0	1	8450	1161	41	2		2	KLK1	19	51323272	Silent	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	7794105	51323272	7805711	116	42435										
ZNF841	0	genome.wustl.edu	37	chr19	52568812	52568812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tgcgaggcctgagcgataacGgaagaccttgccacattcat	11	11	1	2			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	19	52568812	52568812	G	A	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.2323	p.R775C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	56	0	0	31	16	34.04	-	-	-	A	52568812	G	A	52568812	3	1	437	1	0	0	0	0	1	0	0	0	18282	1116	39	1	455	1	ZNF841	19	52568812	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	1245540	52568812	6560171	117	42436										
SIK1	0	genome.wustl.edu	37	chr21	44839340	44839340	+	Frame_Shift_Del	DEL	A	A	-													0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	aggtcggaaagggtcggtggAaagaccttcctgaggcacct							TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	21	44839340	44839340	A	-	DEL	SIK1	ENST00000270162	human	ensembl	69_37n	-1	known	frame_shift_del	c.1138	p.S380fs	0.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178	34	0	0	10	2	16.67	-	-	-	-	44839340	A	-	44839340	7	5	437	1	0	1	0	1	0	0	0	0	14406	246	9	0	1233	0	SIK1	21	44839340	Frame_Shift_Del	DEL	A	TCGA-B6-A0IJ-01A-11W-A050-09		44839340	3290555	118	42437										
SMTN	0	genome.wustl.edu	37	chr22	31484908	31484908	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggcgtcccaacagtggctcaAgagaggacagcaaggggcta	15	10	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	22	31484908	31484908	A	G	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	missense	c.424	p.R142G	0.308	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	168	1	0.59	51	33	39.29	-	-	-	G	31484908	A	G	31484908	3	3	437	1	0	0	0	0	1	0	0	0	14903	64	3	5	442	5	SMTN	22	31484908	Missense_Mutation	SNP	A	TCGA-B6-A0IJ-01A-11W-A050-09		31484908	19819658	119	42438										
LDOC1L	0	genome.wustl.edu	37	chr22	44893163	44893163	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	tggaggtgtggtcatgggtcGagtcccgtttgaagtaattg	16	5	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	22	44893163	44893163	G	A	SNP	LDOC1L	ENST00000341255	human	ensembl	69_37n	-1	known	nonsense	c.274	p.R92*	0.084	NULL	NULL	-	no_errors	LDOC1L	HGNC	ENSG00000188636	164	1	0.6	46	12	20.69	-	-	-	A	44893163	G	A	44893163	4	1	437	1	0	0	0	0	0	1	0	0	8764	1066	37	1	449	1	LDOC1L	22	44893163	Nonsense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	13408255	44893163	6411403	120	42439										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722721	64722721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gcctctatgagagcaaccccGtgaggcaaagacgacctccc	10	15	1	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	X	64722721	64722721	G	A	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.2143	p.V715M	0.475	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	187	0	0	60	22	26.83	-	-	-	A	64722721	G	A	64722721	3	1	437	1	0	0	0	0	1	0	0	0	17658	1145	40	1	2161	1	ZC3H12B	23	64722721	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09		64722721	90547839	121	42440										
SATL1	0	genome.wustl.edu	37	chrX	84363426	84363426	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggactcatgtttggttgcctCaggactggttggctcagtcc	13	10	3	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	X	84363426	84363426	C	T	SNP	SATL1	ENST00000509231	human	ensembl	69_37n	-1	known	silent	c.549	p.L183	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	294	0	0	170	60	26.09	-	-	-	T	84363426	C	T	84363426	2	4	437	1	0	0	0	0	0	0	0	1	13942	813	29	2		2	SATL1	23	84363426	Silent	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	19640705	84363426	70907134	122	42441										
FAM127B	0	genome.wustl.edu	37	chrX	134186077	134186077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	gaatcgggttcctccagcgaCgcgccgcgggccggaggggc	18	14	0	0			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	X	134186077	134186077	C	T	SNP	FAM127B	ENST00000370775	human	ensembl	69_37n	-1	known	missense	c.62	p.R21H	0.491	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950	74	0	0	27	10	27.03	-	-	-	T	134186077	C	T	134186077	3	4	437	1	0	0	0	0	1	0	0	0	5472	536	19	1	347	1	FAM127B	23	134186077	Missense_Mutation	SNP	C	TCGA-B6-A0IJ-01A-11W-A050-09	49822651	134186077	21084483	123	42442										
ZNF75D	0	genome.wustl.edu	37	chrX	134427720	134427720	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ggaccagagcctgtttgacaTtctgtggatgatgcttctgc	12	9	2	3			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	X	134427720	134427720	T	G	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	missense	c.347	p.N116T	0.268	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	114	0	0	52	16	23.53	-	-	-	G	134427720	T	G	134427720	3	3	437	1	0	0	0	0	1	0	0	0	18228	1493	52	5	1205	5	ZNF75D	23	134427720	Missense_Mutation	SNP	T	TCGA-B6-A0IJ-01A-11W-A050-09	241643	134427720	20842840	124	42443										
MECP2	0	genome.wustl.edu	37	chrX	153297782	153297782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.145161290322581	18	0.0765184486798016	1.66270465994962	2.19582583663188	1.01928255016069	0.0305355360502663	0.259684819627482	0	ccggtcacggatgatggagcGccgctgtttgggggaggcag	19	9	1	1			TCGA-B6-A0IJ-01A-11W-A050-09	TCGA-B6-A0IJ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c63f9ddb-6301-400e-a0e8-197eea2efe75	aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737	X	153297782	153297782	G	A	SNP	MECP2	ENST00000303391	human	ensembl	69_37n	-1	known	missense	c.253	p.R85C	1.000	superfamily_DNA-bd_integrase-typ,pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057	62	0	0	21	8	25.81	-	-	-	A	153297782	G	A	153297782	3	1	437	1	0	0	0	0	1	0	0	0	9494	1087	38	1	1215	1	MECP2	23	153297782	Missense_Mutation	SNP	G	TCGA-B6-A0IJ-01A-11W-A050-09	18870062	153297782	1972778	125	42444										
PLCH2	0	genome.wustl.edu	37	chr1	2422690	2422690	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aggaaactggattccctcatCaaagagtcgaagattcggga	11	8	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	2422690	2422690	C	T	SNP	PLCH2	ENST00000378486	human	ensembl	69_37n	1	known	silent	c.1575	p.I525	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCH2	HGNC	ENSG00000149527	16	0	0	6	5	45.45	-	-	-	T	2422690	C	T	2422690	2	4	438	1	0	0	0	0	0	0	0	1	12112	816	29	2		2	PLCH2	1	2422690	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		2422690	246827931	1	42445										
KIF1B	0	genome.wustl.edu	37	chr1	10412697	10412697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cctttcttttaggtcgtattCggaataagcctgaggtggat	11	7	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	10412697	10412697	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.3820	p.R1274W	0.998	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	331	0	0	189	140	42.42	-	-	-	T	10412697	C	T	10412697	3	4	438	1	0	0	0	0	1	0	0	0	8336	875	31	1	5447	1	KIF1B	1	10412697	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7990007	10412697	238837924	2	42446										
FBXO42	0	genome.wustl.edu	37	chr1	16579650	16579650	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgcatcatctatgacaatctGaggaggggaagacattgaaa	11	6	3	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	16579650	16579650	G	A	SNP	FBXO42	ENST00000444116	human	ensembl	69_37n	-1	known	nonsense	c.16	p.Q6*	0.999	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	FBXO42	HGNC	ENSG00000037637	66	0	0	46	17	26.56	-	-	-	A	16579650	G	A	16579650	4	1	438	1	0	0	0	0	0	1	0	0	5797	1305	45	2		2	FBXO42	1	16579650	Nonsense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	6166953	16579650	232670971	3	42447										
MYOM3	0	genome.wustl.edu	37	chr1	24387551	24387551	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gaaatatcggccgacttactCttctcgatgatggccaaggt	10	10	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	24387551	24387551	C	G	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.4002	p.K1334N	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	125	0	0	55	10	15.38	-	-	-	G	24387551	C	G	24387551	3	3	438	1	0	0	0	0	1	0	0	0	10165	927	32	2	332	2	MYOM3	1	24387551	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7807901	24387551	224863070	4	42448										
HMGN2	0	genome.wustl.edu	37	chr1	26799995	26799995	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctgaaggggatgctaagggaGataaagcaaaggtgaaggac	16	4	0	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	26799995	26799995	G	A	SNP	HMGN2	ENST00000361427	human	ensembl	69_37n	1	known	missense	c.37	p.D13N	1.000	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN2	HGNC	ENSG00000198830	124	0	0	34	16	32	-	-	-	A	26799995	G	A	26799995	3	1	438	1	0	0	0	0	1	0	0	0	7286	942	33	2	43	2	HMGN2	1	26799995	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	2412444	26799995	222450626	5	42449										
HMGN2	0	genome.wustl.edu	37	chr1	26800201	26800201	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttgtctttaatagccacagaGaagatccgcgaggttgtctg	11	8	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	26800201	26800201	G	A	SNP	HMGN2	ENST00000361427	human	ensembl	69_37n	1	known	missense	c.68	p.R23K	1.000	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN2	HGNC	ENSG00000198830	139	0	0	43	19	30.65	-	-	-	A	26800201	G	A	26800201	3	1	438	1	0	0	0	0	1	0	0	0	7286	942	33	2	78	2	HMGN2	1	26800201	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	206	26800201	222450420	6	42450										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33116131	33116131	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcttcctcttcctgcgccatGactgcaggattagacactct	7	14	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	33116131	33116131	G	A	SNP	ZBTB8OS	ENST00000436661	human	ensembl	69_37n	-1	known	missense	c.31	p.H11Y	0.440	NULL	pfam_Archease_dom,superfamily_Archease_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZBTB8OS	HGNC	ENSG00000176261	164	0	0	106	34	24.29	-	-	-	A	33116131	G	A	33116131	3	1	438	1	0	0	0	0	1	0	0	0	17653	1277	45	2	531	2	ZBTB8OS	1	33116131	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	6315930	33116131	216134490	7	42451										
ZMYM4	0	genome.wustl.edu	37	chr1	35870691	35870691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aggagcctttcaaggctgctCagtgtccgggatgacactga	13	10	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	35870691	35870691	C	T	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.3596	p.S1199L	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	144	0	0	175	30	14.63	-	-	-	T	35870691	C	T	35870691	3	4	438	1	0	0	0	0	1	0	0	0	17798	838	29	2	3690	2	ZMYM4	1	35870691	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	2754560	35870691	213379930	8	42452										
RLF	0	genome.wustl.edu	37	chr1	40702638	40702638	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttgctatgctaggtttggatCagtaaatgaactacttaacc	8	7	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	40702638	40702638	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.2264	p.S755L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	245	0	0	295	37	11.14	-	-	-	T	40702638	C	T	40702638	3	4	438	1	0	0	0	0	1	0	0	0	13475	838	29	2	2294	2	RLF	1	40702638	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	4831947	40702638	208547983	9	42453										
SLC6A9	0	genome.wustl.edu	37	chr1	44468297	44468298	+	Frame_Shift_Del	DEL	AC	AC	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggtcagcaccacgtaggggaAcgtggccgtgaagtacacca							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	44468297	44468298	AC	-	DEL	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	frame_shift_del	c.964_963	p.F322fs	0.992:0.001	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	116	0	0	49	25	33.33	-	-	-	-	44468298	AC	-	44468297	7	5	438	1	0	1	0	1	0	0	0	0	14780	43	2	0	1188	0	SLC6A9	1	44468297	Frame_Shift_Del	DEL	AC	TCGA-B6-A0IK-01A-12W-A071-09	3765659	44468297	204782324	10	42454										
PLK3	0	genome.wustl.edu	37	chr1	45268477	45268477	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gtggctccagaagtgctgctGagacagggccacggccctga	15	12	0	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	45268477	45268477	G	A	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	1	known	silent	c.699	p.L233	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	60	0	0	26	13	33.33	-	-	-	A	45268477	G	A	45268477	2	1	438	1	0	0	0	0	0	0	0	1	12171	1277	45	2		2	PLK3	1	45268477	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	800180	45268477	203982144	11	42455										
ZCCHC11	0	genome.wustl.edu	37	chr1	52956444	52956444	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cacaacaggaactttagcgtGaaaatcagattccacatcta	6	10	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	52956444	52956444	G	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	missense	c.1348	p.H450N	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	102	0	0	62	23	27.06	-	-	-	T	52956444	G	T	52956444	3	4	438	1	0	0	0	0	1	0	0	0	17676	1290	45	2	3681	2	ZCCHC11	1	52956444	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	7687967	52956444	196294177	12	42456										
HOOK1	0	genome.wustl.edu	37	chr1	60324118	60324118	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agagactaattgagcagcgtGatactttgaaagaaacaaat	9	5	0	5			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	60324118	60324118	G	C	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.1261	p.D421H	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	68	0	0	80	29	26.61	-	-	-	C	60324118	G	C	60324118	3	2	438	1	0	0	0	0	1	0	0	0	7333	1290	45	2	1311	2	HOOK1	1	60324118	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	7367674	60324118	188926503	13	42457										
KANK4	0	genome.wustl.edu	37	chr1	62713143	62713144	+	Frame_Shift_Ins	INS	-	-	T													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	taattgcctgtaagtctcacINScttgtcagtcaggctgctgt							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	62713143	62713144	-	T	INS	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2884_2883	p.A961fs	1.000:1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	61	0	0	47	7	12.96	-	-	-	T	62713144	-	T	62713143	7	5	438	1	0	1	1	0	0	0	0	0	8033	521	18	0	111	0	KANK4	1	62713143	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	2389025	62713143	186537478	14	42458										
C1orf129	0	genome.wustl.edu	37	chr1	170916667	170916667	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aatctccttctttctggctaGagagtagtctccagattctg	8	10	5	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	170916667	170916667	G	A	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	splice_site	c.26-1	e2-1	0.019	-	-	-	no_errors	C1orf129	HGNC	ENSG00000117501	147	0	0	223	63	21.95	-	-	-	A	170916667	G	A	170916667	5	1	438	1	0	0	0	0	0	0	1	0	2015	956	33	2	31	2	C1orf129	1	170916667	Splice_Site	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	108203524	170916667	78333954	15	42459										
NMNAT2	0	genome.wustl.edu	37	chr1	183387389	183387389	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcaagataacgtgggtcttgGtggtctcggtcatggtgcag	16	7	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	183387389	183387389	G	T	SNP	NMNAT2	ENST00000287713	human	ensembl	69_37n	-1	known	missense	c.14	p.T5N	1.000	NULL	pfam_Cytidylyltransf	-	no_errors	NMNAT2	HGNC	ENSG00000157064	115	0	0	56	22	28.21	-	-	-	T	183387389	G	T	183387389	3	4	438	1	0	0	0	0	1	0	0	0	10571	1261	44	4	1027	4	NMNAT2	1	183387389	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	12470722	183387389	65863232	16	42460										
KCNT2	0	genome.wustl.edu	37	chr1	196274447	196274447	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gttggcggggtgagttagctCtgtgataatactgagactgg	16	5	1	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	196274447	196274447	C	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	nonsense	c.2512	p.E838*	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	84	0	0	125	37	22.84	-	-	-	A	196274447	C	A	196274447	4	1	438	1	0	0	0	0	0	1	0	0	8146	922	32	2	923	2	KCNT2	1	196274447	Nonsense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	12887058	196274447	52976174	17	42461										
CNTN2	0	genome.wustl.edu	37	chr1	205030995	205030995	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttttccgggctcccacagctCagcctgagtggctaaaagtg	11	12	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	205030995	205030995	C	T	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	nonsense	c.976	p.Q326*	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	89	0	0	75	19	20.21	-	-	-	T	205030995	C	T	205030995	4	4	438	1	0	0	0	0	0	1	0	0	3671	827	29	2	1006	2	CNTN2	1	205030995	Nonsense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	8756548	205030995	44219626	18	42462										
DSTYK	0	genome.wustl.edu	37	chr1	205132057	205132057	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gtaataatccctacctgtttGatttgctcccatagcatcct	5	12	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	205132057	205132057	G	A	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	silent	c.1635	p.I545	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	206	0	0	183	41	18.3	-	-	-	A	205132057	G	A	205132057	2	1	438	1	0	0	0	0	0	0	0	1	4820	1280	45	2		2	DSTYK	1	205132057	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	101062	205132057	44118564	19	42463										
ARID4B	0	genome.wustl.edu	37	chr1	235345181	235345181	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	taggaggggtatttagcactGaattactgccactacttgga	11	7	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	1	235345181	235345181	G	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	nonsense	c.3053	p.S1018*	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	286	0	0	202	63	23.68	-	-	-	C	235345181	G	C	235345181	4	2	438	1	0	0	0	0	0	1	0	0	922	1294	45	2	905	2	ARID4B	1	235345181	Nonsense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	30213124	235345181	13905440	20	42464										
TAF1B	0	genome.wustl.edu	37	chr2	10008483	10008483	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	atgtcagctgtcctccttttCttgaaagtggagcggagtct	11	9	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	10008483	10008483	C	T	SNP	TAF1B	ENST00000263663	human	ensembl	69_37n	1	known	missense	c.478	p.L160F	0.042	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	230	0	0	198	58	22.57	-	-	-	T	10008483	C	T	10008483	3	4	438	1	0	0	0	0	1	0	0	0	15612	913	32	2	500	2	TAF1B	2	10008483	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		10008483	233190890	21	42465										
ADRA2B	0	genome.wustl.edu	37	chr2	96781473	96781474	+	Frame_Shift_Ins	INS	-	-	C													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cagcgagatgacggcggcgaINStgagccacacagtgaggatg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	96781473	96781474	-	C	INS	ADRA2B	ENST00000409345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.416_415	p.I139fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2B,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2B	HGNC	ENSG00000222040	21	0	0	2	2	50	-	-	-	C	96781474	-	C	96781473	7	5	438	1	0	1	1	0	0	0	0	0	338	333	12	0	931	0	ADRA2B	2	96781473	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	86772990	96781473	146417900	22	42466										
VWA3B	0	genome.wustl.edu	37	chr2	98928506	98928507	+	Frame_Shift_Ins	INS	-	-	G													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gagcccagggtttgggtgatINSggggggggaacacaacatcg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	98928506	98928507	-	G	INS	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1977_1978	p.T662fs	0.000:0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	40	0	0	26	4	13.33	-	-	-	G	98928507	-	G	98928506	7	5	438	1	0	1	1	0	0	0	0	0	17338	1479	51	0		0	VWA3B	2	98928506	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	2147033	98928506	144270867	23	42467										
NPHP1	0	genome.wustl.edu	37	chr2	110917730	110917730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	accatcaaatagacagaggcGtacatgtctgctgagaacct	9	10	2	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	110917730	110917730	G	A	SNP	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	missense	c.1225	p.R409C	0.799	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	202	0	0	211	58	21.48	-	-	-	A	110917730	G	A	110917730	3	1	438	1	0	0	0	0	1	0	0	0	10651	1145	40	1	1016	1	NPHP1	2	110917730	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	11989224	110917730	132281643	24	42468										
SLC35F5	0	genome.wustl.edu	37	chr2	114512753	114512753	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggtacataccgaagtaagttCagaggaagcaacccatatca	9	9	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	114512753	114512753	C	T	SNP	SLC35F5	ENST00000245680	human	ensembl	69_37n	-1	known	missense	c.262	p.E88K	0.999	NULL	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084	98	0	0	48	12	20	-	-	-	T	114512753	C	T	114512753	3	4	438	1	0	0	0	0	1	0	0	0	14681	835	29	2	1361	2	SLC35F5	2	114512753	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	3595023	114512753	128686620	25	42469										
MYO7B	0	genome.wustl.edu	37	chr2	128384652	128384653	+	Frame_Shift_Del	DEL	GT	GT	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcttctcccggctcttcgaaGtcatcacactctcaggtaat							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	128384652	128384653	GT	-	DEL	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	frame_shift_del	c.4240_4241	p.V1414fs	1.000:1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	14	0	0	65	35	34.65	-	-	-	-	128384653	GT	-	128384652	7	5	438	1	0	1	0	1	0	0	0	0	10155	1029	36	0	4358	0	MYO7B	2	128384652	Frame_Shift_Del	DEL	GT	TCGA-B6-A0IK-01A-12W-A071-09	13871899	128384652	114814721	26	42470			1	71		2	2	12	N	GT_C	4.903502e-05
MYO7B	0	genome.wustl.edu	37	chr2	128384663	128384663	+	Frame_Shift_Del	DEL	C	C	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctcttcgaagtcatcacactCtcaggtaatggcatctgaca							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	128384663	128384663	C	-	DEL	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	frame_shift_del	c.4251	p.S1418fs	0.973	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	14	0	0	59	35	36.84	-	-	-	-	128384663	C	-	128384663	7	5	438	1	0	1	0	1	0	0	0	0	10155	900	32	0	4369	0	MYO7B	2	128384663	Frame_Shift_Del	DEL	C	TCGA-B6-A0IK-01A-12W-A071-09	11	128384663	114814710	27	42471			1	71		2	2	12	N	GT_C	4.903502e-05
LRP1B	0	genome.wustl.edu	37	chr2	141458082	141458082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	catgcctcaggcaagtaactCcatcttctgccaaatatcca	5	14	3	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	141458082	141458082	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.6536	p.G2179E	1.000	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	358	0	0	332	131	28.23	-	-	-	T	141458082	C	T	141458082	3	4	438	1	0	0	0	0	1	0	0	0	9021	855	30	2	7467	2	LRP1B	2	141458082	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	13073419	141458082	101741291	28	42472										
BAZ2B	0	genome.wustl.edu	37	chr2	160295068	160295068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctgctgtgacaaaacctgagGctgcttctgctgggattgga	13	9	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	160295068	160295068	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.1039	p.P347A	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	195	0	0	227	79	25.82	-	-	-	C	160295068	G	C	160295068	3	2	438	1	0	0	0	0	1	0	0	0	1336	1203	42	4	5587	4	BAZ2B	2	160295068	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	18836986	160295068	82904305	29	42473										
ITGB6	0	genome.wustl.edu	37	chr2	160993970	160993970	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cagagcagccctttgtgtctCacgcaggagaaattgtcaca	10	11	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	160993970	160993970	C	A	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	silent	c.1635	p.V545	1.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	132	1	0.75	139	45	24.32	-	-	-	A	160993970	C	A	160993970	2	1	438	1	0	0	0	0	0	0	0	1	7953	813	29	2		2	ITGB6	2	160993970	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	698902	160993970	82205403	30	42474										
NOP58	0	genome.wustl.edu	37	chr2	203162128	203162128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgaatgctggcagccaaaacCgttttggctatccgttatga	10	10	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	203162128	203162128	C	T	SNP	NOP58	ENST00000433543	human	ensembl	69_37n	1	known	missense	c.544	p.R182C	0.901	NULL	pfam_NOSIC,pfam_SnoRNA-bd_dom,smart_NOSIC	-	no_start_codon	NOP58	HGNC	ENSG00000055044	196	0	0	154	52	25.24	-	-	-	T	203162128	C	T	203162128	3	4	438	1	0	0	0	0	1	0	0	0	10612	639	23	1	1140	1	NOP58	2	203162128	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	42168158	203162128	40037245	31	42475										
CRYGC	0	genome.wustl.edu	37	chr2	208992995	208992995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggccccccagtcctggcaccGcctgtactcttggggcctca	11	18	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	2	208992995	208992995	G	A	SNP	CRYGC	ENST00000282141	human	ensembl	69_37n	-1	known	missense	c.457	p.R153W	0.113	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254	173	0	0	80	24	22.86	-	-	-	A	208992995	G	A	208992995	3	1	438	1	0	0	0	0	1	0	0	0	3946	1086	38	1	71	1	CRYGC	2	208992995	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	5830867	208992995	34206378	32	42476										
ZNF167	0	genome.wustl.edu	37	chr3	44612634	44612634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tattcagttatagctccagcCttatggtacatcagagaacc	7	10	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	44612634	44612634	C	T	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.2032	p.L678F	0.980	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	329	1	0.3	215	168	43.86	-	-	-	T	44612634	C	T	44612634	3	4	438	1	0	0	0	0	1	0	0	0	17837	681	24	4	2050	4	ZNF167	3	44612634	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		44612634	153409796	33	42477										
CDCP1	0	genome.wustl.edu	37	chr3	45152068	45152068	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgcagagagaggttgaagttCcccgccatgttcccaggctg	13	11	0	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	45152068	45152068	C	A	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	silent	c.921	p.G307	0.993	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	182	0	0	103	16	13.45	-	-	-	A	45152068	C	A	45152068	2	1	438	1	0	0	0	0	0	0	0	1	3122	842	30	2		2	CDCP1	3	45152068	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	539434	45152068	152870362	34	42478										
IMPG2	0	genome.wustl.edu	37	chr3	100949976	100949976	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcctcggtaccaccagttctCacccacccggcacctgcaac	7	20	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	100949976	100949976	C	T	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.3247	p.E1083K	1.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	184	0	0	291	64	17.98	-	-	-	T	100949976	C	T	100949976	3	4	438	1	0	0	0	0	1	0	0	0	7783	835	29	2	494	2	IMPG2	3	100949976	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	55797908	100949976	97072454	35	42479										
CBLB	0	genome.wustl.edu	37	chr3	105459369	105459369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gctgccatcaatcagggcttGaaataagggcttgttatgag	12	7	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	105459369	105459369	G	C	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.952	p.Q318E	1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	188	0	0	210	55	20.68	-	-	-	C	105459369	G	C	105459369	3	2	438	1	0	0	0	0	1	0	0	0	2726	1299	45	2	2048	2	CBLB	3	105459369	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	4509393	105459369	92563061	36	42480										
GOLGB1	0	genome.wustl.edu	37	chr3	121435775	121435775	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gctccaaagcactataccgaGactctagttcagcctgggct	9	13	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	121435775	121435775	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361F	0.066	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	255	0	0	204	56	21.46	-	-	-	A	121435775	G	A	121435775	3	1	438	1	0	0	0	0	1	0	0	0	6614	942	33	2	8753	2	GOLGB1	3	121435775	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	15976406	121435775	76586655	37	42481										
ALDH1L1	0	genome.wustl.edu	37	chr3	125855665	125855666	+	Frame_Shift_Ins	INS	-	-	C													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gccctcggcatccacgaactINScccccccaatgaagagctgg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	125855665	125855666	-	C	INS	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.E429fs	0.000:0.000	superfamily_Ald_DH/histidinol_DH,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	18	0	0	12	3	20	-	-	-	C	125855666	-	C	125855665	7	5	438	1	0	1	1	0	0	0	0	0	494	1551	54	0	1474	0	ALDH1L1	3	125855665	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	4419890	125855665	72166765	38	42482										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	168	0	0	230	122	34.46	-	-	-	G	178952085	A	G	178952085	3	3	438	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0IK-01A-12W-A071-09	53096420	178952085	19070345	39	42483										
KLF3	0	genome.wustl.edu	37	chr4	38690278	38690278	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tctactccacaccattgcctGagaagttctttcagacccca	5	15	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	4	38690278	38690278	G	A	SNP	KLF3	ENST00000261438	human	ensembl	69_37n	1	known	missense	c.130	p.E44K	0.261	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787	196	0	0	63	30	32.26	-	-	-	A	38690278	G	A	38690278	3	1	438	1	0	0	0	0	1	0	0	0	8400	1291	45	2	136	2	KLF3	4	38690278	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		38690278	152463998	40	42484										
RUFY3	0	genome.wustl.edu	37	chr4	71639285	71639285	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggaacagcagtaaaggtactGaagggtacgtacaaagaaaa	12	5	0	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	4	71639285	71639285	G	A	SNP	RUFY3	ENST00000417478	human	ensembl	69_37n	1	known	missense	c.934	p.E312K	1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	88	0	0	39	25	39.06	-	-	-	A	71639285	G	A	71639285	3	1	438	1	0	0	0	0	1	0	0	0	13826	1291	45	2	1138	2	RUFY3	4	71639285	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	32949007	71639285	119514991	41	42485										
PRKG2	0	genome.wustl.edu	37	chr4	82126025	82126025	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcaatggccacagtctgcttCgacagctgctcccgcagctc	10	16	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	4	82126025	82126025	C	T	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	silent	c.177	p.S59	0.000	pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	155	0	0	94	48	33.8	-	-	-	T	82126025	C	T	82126025	2	4	438	1	0	0	0	0	0	0	0	1	12604	871	31	1		1	PRKG2	4	82126025	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	10486740	82126025	109028251	42	42486										
ROPN1L	0	genome.wustl.edu	37	chr5	10464988	10464988	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggaagaacggcatgataggtCtttcagatttcttctttcca	9	8	4	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	10464988	10464988	C	G	SNP	ROPN1L	ENST00000274134	human	ensembl	69_37n	1	known	missense	c.622	p.L208V	0.996	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1L	HGNC	ENSG00000145491	59	0	0	53	6	10.17	-	-	-	G	10464988	C	G	10464988	3	3	438	1	0	0	0	0	1	0	0	0	13611	913	32	2	640	2	ROPN1L	5	10464988	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		10464988	170450272	43	42487										
LIFR	0	genome.wustl.edu	37	chr5	38504110	38504110	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgaattagatttcttaatttCaatttcacataaaaaattaa	2	4	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	38504110	38504110	C	T	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	missense	c.1405	p.E469K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	144	0	0	126	44	25.88	-	-	-	T	38504110	C	T	38504110	3	4	438	1	0	0	0	0	1	0	0	0	8835	835	29	2	1932	2	LIFR	5	38504110	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	28039122	38504110	142411150	44	42488										
HCN1	0	genome.wustl.edu	37	chr5	45645560	45645560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	acagtcccagtcctaaaattCatgatcaggtccaataggaa	7	10	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	45645560	45645560	C	G	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	missense	c.576	p.M192I	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	283	0	0	268	68	20.06	-	-	-	G	45645560	C	G	45645560	3	3	438	1	0	0	0	0	1	0	0	0	7047	826	29	2	2124	2	HCN1	5	45645560	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7141450	45645560	135269700	45	42489										
CDO1	0	genome.wustl.edu	37	chr5	115146915	115146915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttcagacttcttgaccatctCattggattttttgtcaggcc	7	10	4	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	115146915	115146915	C	G	SNP	CDO1	ENST00000250535	human	ensembl	69_37n	-1	known	missense	c.346	p.E116Q	0.999	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	-	no_errors	CDO1	HGNC	ENSG00000129596	542	0	0	462	126	21.28	-	-	-	G	115146915	C	G	115146915	3	3	438	1	0	0	0	0	1	0	0	0	3198	835	29	2	268	2	CDO1	5	115146915	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	69501355	115146915	65768345	46	42490										
PCDHA10	0	genome.wustl.edu	37	chr5	140237804	140237804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgcactgaggtgctcggcggCgcccaccgagggcgcatgtg	17	13	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	140237804	140237804	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.2171	p.A724V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	12	0	0	2	4	66.67	-	-	-	T	140237804	C	T	140237804	3	4	438	1	0	0	0	0	1	0	0	0	11593	768	27	1	2173	1	PCDHA10	5	140237804	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	25090889	140237804	40677456	47	42491										
CCDC99	0	genome.wustl.edu	37	chr5	169023706	169023706	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gaaatctggagaaatttaagGtatgtataacagttaaaaaa	8	2	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	169023706	169023706	G	A	SNP	CCDC99	ENST00000265295	human	ensembl	69_37n	1	known	splice_site	c.1032+1	e7+1	1.000	-	-	-	no_errors	CCDC99	HGNC	ENSG00000040275	127	0	0	120	53	30.46	-	-	-	A	169023706	G	A	169023706	5	1	438	1	0	0	0	0	0	0	1	0	2903	1275	44	4	1059	4	CCDC99	5	169023706	Splice_Site	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	28785902	169023706	11891554	48	42492										
B4GALT7	0	genome.wustl.edu	37	chr5	177031459	177031459	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgcttcgaggagctcctggtCttcgtgccccacatgcgccg	12	16	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	177031459	177031459	C	G	SNP	B4GALT7	ENST00000029410	human	ensembl	69_37n	1	known	silent	c.330	p.V110	0.998	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT7	HGNC	ENSG00000027847	81	0	0	69	14	16.87	-	-	-	G	177031459	C	G	177031459	2	3	438	1	0	0	0	0	0	0	0	1	1280	900	32	2		2	B4GALT7	5	177031459	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	8007753	177031459	3883801	49	42493										
FLT4	0	genome.wustl.edu	37	chr5	180030295	180030296	+	Frame_Shift_Ins	INS	-	-	CCTG													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctcgctgttgtaaaacacctINSggcctcctcgggccccccgc							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	5	180030295	180030296	-	CCTG	INS	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3989_3988	p.Q1330fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	36	0	0	55	42	43.3	-	-	-	CCTG	180030296	-	CCTG	180030295	7	5	438	1	0	1	1	0	0	0	0	0	5990	1580	55	0	106	0	FLT4	5	180030295	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	2998836	180030295	884965	50	42494										
C6orf62	0	genome.wustl.edu	37	chr6	24716531	24716531	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tggtataacctcagacacttCaaaaagtgctgactttttct	6	9	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	6	24716531	24716531	C	T	SNP	C6orf62	ENST00000378119	human	ensembl	69_37n	-1	known	missense	c.151	p.E51K	1.000	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308	102	0	0	81	25	23.36	-	-	-	T	24716531	C	T	24716531	3	4	438	1	0	0	0	0	1	0	0	0	2390	835	29	2	554	2	C6orf62	6	24716531	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		24716531	146398536	51	42495										
TNXB	0	genome.wustl.edu	37	chr6	32041678	32041678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcactgtcagctctcctaggCgtggctccagcggggactca	12	14	4	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	6	32041678	32041678	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.4427	p.R1476H	0.715	smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	40	0	0	32	8	20	-	-	-	T	32041678	C	T	32041678	3	4	438	1	0	0	0	0	1	0	0	0	16441	768	27	1	10418	1	TNXB	6	32041678	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7325147	32041678	139073389	52	42496										
SYNJ2	0	genome.wustl.edu	37	chr6	158516838	158516838	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aagccagcatcagacgaagcCcctcctggggcaggagcctc	12	15	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	6	158516838	158516838	C	G	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	silent	c.3933	p.A1311	0.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	86	0	0	88	14	13.73	-	-	-	G	158516838	C	G	158516838	2	3	438	1	0	0	0	0	0	0	0	1	15545	610	22	4		4	SYNJ2	6	158516838	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	126475160	158516838	12598229	53	42497										
FOXK1	0	genome.wustl.edu	37	chr7	4796811	4796812	+	Frame_Shift_Ins	INS	-	-	G													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cacccccttcgggcctctgtINScctcaaggtaaagttctctg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	4796811	4796812	-	G	INS	FOXK1	ENST00000328914	human	ensembl	69_37n	1	known	frame_shift_ins	c.1237_1238	p.S413fs	1.000:1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916	41	0	0	17	7	29.17	-	-	-	G	4796812	-	G	4796811	7	5	438	1	0	1	1	0	0	0	0	0	6062	1667	58	0	1255	0	FOXK1	7	4796811	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09		4796811	154341852	54	42498										
DNAH11	0	genome.wustl.edu	37	chr7	21882253	21882253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	caaatcctcactataagccgGaattacaagctcagacaact	5	12	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	21882253	21882253	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.10804	p.E3602K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	91	0	0	100	30	23.08	-	-	-	A	21882253	G	A	21882253	3	1	438	1	0	0	0	0	1	0	0	0	4635	1175	41	2	11067	2	DNAH11	7	21882253	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	17085442	21882253	137256410	55	42499										
ABCA13	0	genome.wustl.edu	37	chr7	48319443	48319443	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tatagtttcaaaccatttttCtgtttggagaaatacctggg	8	6	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	48319443	48319443	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.8652	p.F2884L	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	158	0	0	107	36	25	-	-	-	G	48319443	C	G	48319443	3	3	438	1	0	0	0	0	1	0	0	0	31	912	32	2	8551	2	ABCA13	7	48319443	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	26437190	48319443	110819220	56	42500										
ABCB4	0	genome.wustl.edu	37	chr7	87069530	87069530	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tttacctgtggtaatttcatGataaactcataggcgttggc	9	7	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	87069530	87069530	G	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	silent	c.1545	p.I515	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	125	0	0	83	28	25.23	-	-	-	T	87069530	G	T	87069530	2	4	438	1	0	0	0	0	0	0	0	1	43	1280	45	2		2	ABCB4	7	87069530	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	38750087	87069530	72069133	57	42501										
STEAP1	0	genome.wustl.edu	37	chr7	89789120	89789120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttaatggaaagcagaaaagaCatcacaaaccaagaagaact	7	7	1	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	89789120	89789120	C	T	SNP	STEAP1	ENST00000297205	human	ensembl	69_37n	1	known	silent	c.18	p.D6	0.317	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647	222	0	0	143	39	21.43	-	-	-	T	89789120	C	T	89789120	2	4	438	1	0	0	0	0	0	0	0	1	15368	477	17	4		4	STEAP1	7	89789120	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	2719590	89789120	69349543	58	42502										
MLL5	0	genome.wustl.edu	37	chr7	104752681	104752681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcaagttggaacacctcagcGagagcctcaaagaaactttt	8	10	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	104752681	104752681	G	A	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.4478	p.R1493Q	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	206	0	0	169	61	26.41	-	-	-	A	104752681	G	A	104752681	3	1	438	1	0	0	0	0	1	0	0	0	9695	1058	37	1	4576	1	MLL5	7	104752681	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	14963561	104752681	54385982	59	42503										
GPR85	0	genome.wustl.edu	37	chr7	112723971	112723971	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgtctaagaccaatagccttCttctgcctgtggtgtttgca	9	11	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	112723971	112723971	C	A	SNP	GPR85	ENST00000297146	human	ensembl	69_37n	-1	known	missense	c.806	p.R269I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604	296	0	0	167	50	23.04	-	-	-	A	112723971	C	A	112723971	3	1	438	1	0	0	0	0	1	0	0	0	6765	913	32	2	310	2	GPR85	7	112723971	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7971290	112723971	46414692	60	42504										
PPP1R3A	0	genome.wustl.edu	37	chr7	113558463	113558463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	actgccatctttttgataagGaggaaccaatacaatcttaa	6	8	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	113558463	113558463	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.589	p.P197S	1.000	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	193	0	0	188	50	20.92	-	-	-	A	113558463	G	A	113558463	3	1	438	1	0	0	0	0	1	0	0	0	12448	1174	41	2	2795	2	PPP1R3A	7	113558463	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	834492	113558463	45580200	61	42505										
SMO	0	genome.wustl.edu	37	chr7	128848650	128848650	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	accaccccgggctgctgagtGagaaggctgccagcaagatc	13	13	0	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	128848650	128848650	G	A	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	missense	c.1315	p.E439K	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	36	0	0	14	8	36.36	-	-	-	A	128848650	G	A	128848650	3	1	438	1	0	0	0	0	1	0	0	0	14889	1291	45	2	1341	2	SMO	7	128848650	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	15290187	128848650	30290013	62	42506										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138774481	138774481	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aagttctcttctgagagaacCtcatgagaatatttgcataa	7	7	3	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	138774481	138774481	C	T	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	silent	c.333	p.E111	0.003	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	104	0	0	77	31	28.7	-	-	-	T	138774481	C	T	138774481	2	4	438	1	0	0	0	0	0	0	0	1	17671	680	24	4		4	ZC3HAV1	7	138774481	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	9925831	138774481	20364182	63	42507										
MGAM	0	genome.wustl.edu	37	chr7	141795512	141795512	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttgtgcggcctctgctccatGagtgagtgtccagcagggat	14	10	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	141795512	141795512	G	C	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.4918	p.E1640Q	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	256	0	0	125	50	28.25	-	-	-	C	141795512	G	C	141795512	3	2	438	1	0	0	0	0	1	0	0	0	9612	1304	45	2	5076	2	MGAM	7	141795512	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	3021031	141795512	17343151	64	42508										
SSPO	0	genome.wustl.edu	37	chr7	149489165	149489165	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttctctcagagccttgccctCaggacggctgccccaatgcc	9	17	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	7	149489165	149489165	C	T	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	26	0	0	12	4	25	-	-	-	T	149489165	C	T	149489165	1	4	438	0	1	0	0	0	0	0	0	0	15280	827	29	2		2	SSPO	7	149489165	RNA	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7693653	149489165	9649498	65	42509										
LZTS1	0	genome.wustl.edu	37	chr8	20110307	20110307	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cctcacctcccactgggtctCctccagcgcggggccgaagc	11	19	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	8	20110307	20110307	C	G	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	missense	c.1135	p.E379Q	1.000	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	42	0	0	18	5	20.83	-	-	-	G	20110307	C	G	20110307	3	3	438	1	0	0	0	0	1	0	0	0	9205	864	30	2	663	2	LZTS1	8	20110307	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		20110307	126253715	66	42510										
ZFHX4	0	genome.wustl.edu	37	chr8	77767690	77767690	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctcccaaagagccaaaaactCtggatactctgccaaaacct	5	14	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	8	77767690	77767690	C	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.8533	p.L2845V	0.759	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	108	0	0	98	13	11.71	-	-	-	G	77767690	C	G	77767690	3	3	438	1	0	0	0	0	1	0	0	0	17731	912	32	2	8567	2	ZFHX4	8	77767690	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	57657383	77767690	68596332	67	42511										
RGS22	0	genome.wustl.edu	37	chr8	101052243	101052243	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gaagaatccagctctattttCtacatacaaagattgcaaca	5	9	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	8	101052243	101052243	C	T	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.2011	p.E671K	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	68	0	0	81	16	16.33	-	-	-	T	101052243	C	T	101052243	3	4	438	1	0	0	0	0	1	0	0	0	13389	922	32	2	1843	2	RGS22	8	101052243	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	23284553	101052243	45311779	68	42512										
KLHL38	0	genome.wustl.edu	37	chr8	124658251	124658251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggattgagggtcataagcaaGaatcctccttgtgtaacctg	11	8	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	8	124658251	124658251	G	C	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.1474	p.L492V	0.994	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	203	0	0	91	42	31.58	-	-	-	C	124658251	G	C	124658251	3	2	438	1	0	0	0	0	1	0	0	0	8443	942	33	2	275	2	KLHL38	8	124658251	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	23606008	124658251	21705771	69	42513										
PRUNE2	0	genome.wustl.edu	37	chr9	79239391	79239391	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gctgcctctgatgcttccctCagttcttcatccagtctgca	7	15	5	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	79239391	79239391	C	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	silent	c.8091	p.L2697	1.000	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	12	0	0	13	5	27.78	-	-	-	A	79239391	C	A	79239391	2	1	438	1	0	0	0	0	0	0	0	1	12721	813	29	2		2	PRUNE2	9	79239391	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		79239391	61974040	70	42514										
AGTPBP1	0	genome.wustl.edu	37	chr9	88233910	88233910	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgtcttaccataattaaactGactgttggacttttcacagt	6	8	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	88233910	88233910	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	nonsense	c.2359	p.Q787*	1.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	112	0	0	114	25	17.73	-	-	-	A	88233910	G	A	88233910	4	1	438	1	0	0	0	0	0	1	0	0	400	1299	45	2	1397	2	AGTPBP1	9	88233910	Nonsense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	8994519	88233910	52979521	71	42515										
ECM2	0	genome.wustl.edu	37	chr9	95277170	95277170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cctcctcctcccttccttggCgttgttgctggtgtgccagc	10	16	0	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	95277170	95277170	C	T	SNP	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	missense	c.797	p.R266H	0.000	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	320	0	0	343	104	23.21	-	-	-	T	95277170	C	T	95277170	3	4	438	1	0	0	0	0	1	0	0	0	4933	768	27	1	1330	1	ECM2	9	95277170	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	7043260	95277170	45936261	72	42516										
OR13C2	0	genome.wustl.edu	37	chr9	107367603	107367603	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gtccccatggccaagccgagGaacatctgcactgcacagcc	10	16	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	107367603	107367603	G	C	SNP	OR13C2	ENST00000542196	human	ensembl	69_37n	-1	known	missense	c.306	p.F102L	0.192	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019	316	0	0	442	94	17.54	-	-	-	C	107367603	G	C	107367603	3	2	438	1	0	0	0	0	1	0	0	0	11007	1165	41	2	653	2	OR13C2	9	107367603	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	12090433	107367603	33845828	73	42517										
ZNF483	0	genome.wustl.edu	37	chr9	114305214	114305214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	taaaaccttataaatgtaaaGaatgtgggaagtccttcagt	8	5	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	114305214	114305214	G	C	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	missense	c.1999	p.E667Q	0.837	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	246	0	0	284	77	21.27	-	-	-	C	114305214	G	C	114305214	3	2	438	1	0	0	0	0	1	0	0	0	18032	943	33	2	2017	2	ZNF483	9	114305214	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	6937611	114305214	26908217	74	42518										
TNFSF15	0	genome.wustl.edu	37	chr9	117552737	117552737	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	atatttgctctcctcctataGtaagaaggctccaaagaagg	8	9	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	117552737	117552737	G	A	SNP	TNFSF15	ENST00000374045	human	ensembl	69_37n	-1	known	silent	c.751	p.L251	0.996	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_a/b/c	-	no_errors	TNFSF15	HGNC	ENSG00000181634	225	0	0	209	49	18.99	-	-	-	A	117552737	G	A	117552737	2	1	438	1	0	0	0	0	0	0	0	1	16403	1020	36	4		4	TNFSF15	9	117552737	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	3247523	117552737	23660694	75	42519										
TNC	0	genome.wustl.edu	37	chr9	117848731	117848731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gtcctccccagtatagccctCatcacacacacactgcccat	4	19	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	117848731	117848731	C	T	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427K	0.995	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	164	0	0	146	29	16.48	-	-	-	T	117848731	C	T	117848731	3	4	438	1	0	0	0	0	1	0	0	0	16365	835	29	2	5430	2	TNC	9	117848731	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	295994	117848731	23364700	76	42520										
ODF2	0	genome.wustl.edu	37	chr9	131233592	131233592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggtccccctgctcaggtcaaGatgcaaaaaggtgagcgcca	12	12	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	131233592	131233592	G	C	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.426	p.K142N	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	51	0	0	59	8	11.94	-	-	-	C	131233592	G	C	131233592	3	2	438	1	0	0	0	0	1	0	0	0	10900	933	33	2	499	2	ODF2	9	131233592	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	13384861	131233592	9979839	77	42521										
SARDH	0	genome.wustl.edu	37	chr9	136550315	136550315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgtggccagctggaacctacCaggtgccctgcggctctcag	13	15	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	9	136550315	136550315	C	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.2163	p.L721	1.000	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	14	0	0	6	5	45.45	-	-	-	T	136550315	C	T	136550315	2	4	438	1	0	0	0	0	0	0	0	1	13928	608	21	4		4	SARDH	9	136550315	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	5316723	136550315	4663116	78	42522										
EPC1	0	genome.wustl.edu	37	chr10	32594768	32594768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tagactcatagtaagcaataTtactttctgcctctgggacc	7	10	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	10	32594768	32594768	T	C	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.245	p.N82S	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	178	0	0	106	52	32.91	-	-	-	C	32594768	T	C	32594768	3	2	438	1	0	0	0	0	1	0	0	0	5197	1493	52	5	2321	5	EPC1	10	32594768	Missense_Mutation	SNP	T	TCGA-B6-A0IK-01A-12W-A071-09		32594768	102939979	79	42523										
CSGALNACT2	0	genome.wustl.edu	37	chr10	43654238	43654238	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agcagaccttacggaatataGacatgtgaccctcttccgcc	8	13	1	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	10	43654238	43654238	G	C	SNP	CSGALNACT2	ENST00000374466	human	ensembl	69_37n	1	known	missense	c.737	p.R246T	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826	150	0	0	63	46	42.2	-	-	-	C	43654238	G	C	43654238	3	2	438	1	0	0	0	0	1	0	0	0	3971	942	33	2	743	2	CSGALNACT2	10	43654238	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	11059470	43654238	91880509	80	42524										
SUFU	0	genome.wustl.edu	37	chr10	104386944	104386944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cttcacagattctgttgaccGaagagtttgtagagaaaatg	10	6	2	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	10	104386944	104386944	G	A	SNP	SUFU	ENST00000369902	human	ensembl	69_37n	1	known	missense	c.1309	p.E437K	0.998	pfam_SUFU_C,pirsf_Suppressor_of_fused_protein	pfam_SUFU_C,pfam_SUFU_domain,pirsf_Suppressor_of_fused_protein	-	no_errors	SUFU	HGNC	ENSG00000107882	158	0	0	61	26	29.89	-	-	-	A	104386944	G	A	104386944	3	1	438	1	0	0	0	0	1	0	0	0	15459	1059	37	1	1361	1	SUFU	10	104386944	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	60732706	104386944	31147803	81	42525										
TUBGCP2	0	genome.wustl.edu	37	chr10	135103338	135103339	+	Frame_Shift_Ins	INS	-	-	C													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcgccgcacctgtgctgaggINSatcttgtccgccattttctg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	10	135103338	135103339	-	C	INS	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1434_1433	p.I478fs	0.998:1.000	pfam_Spc97_Spc98,superfamily_Ocr	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	25	0	0	10	7	41.18	-	-	-	C	135103339	-	C	135103338	7	5	438	1	0	1	1	0	0	0	0	0	16863	1164	41	0	1398	0	TUBGCP2	10	135103338	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	30716394	135103338	431409	82	42526										
ZNF143	0	genome.wustl.edu	37	chr11	9546958	9546958	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gtaccaaggcatactgtcctCagtcgacagcagtgctgctc	10	13	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	11	9546958	9546958	C	G	SNP	ZNF143	ENST00000447186	human	ensembl	69_37n	1	putative	nonsense	c.434	p.S145*	0.005	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF143	HGNC	ENSG00000166478	159	0	0	69	30	30.3	-	-	-	G	9546958	C	G	9546958	4	3	438	1	0	0	0	0	0	1	0	0	17828	841	29	2		2	ZNF143	11	9546958	Nonsense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		9546958	125459558	83	42527										
ADRBK1	0	genome.wustl.edu	37	chr11	67051773	67051774	+	Frame_Shift_Ins	INS	-	-	G													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcagagactgtcttcgacacINScatcaacgctgagacagacc							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	11	67051773	67051774	-	G	INS	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	frame_shift_ins	c.1583_1584	p.I529fs	1.000:1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	22	0	0	5	4	44.44	-	-	-	G	67051774	-	G	67051773	7	5	438	1	0	1	1	0	0	0	0	0	343	507	18	0	1653	0	ADRBK1	11	67051773	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	57504815	67051773	67954743	84	42528										
NOP2	0	genome.wustl.edu	37	chr12	6676997	6676997	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cttacctgcaggcaagaatcTgacgagttctgtctcggcac	10	12	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	6676997	6676997	T	C	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.88	p.R30G	0.002	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	55	0	0	29	4	12.12	-	-	-	C	6676997	T	C	6676997	3	2	438	1	0	0	0	0	1	0	0	0	10610	1588	55	5	2398	5	NOP2	12	6676997	Missense_Mutation	SNP	T	TCGA-B6-A0IK-01A-12W-A071-09		6676997	127174898	85	42529										
AMIGO2	0	genome.wustl.edu	37	chr12	47471790	47471790	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttttccatctctttatccggCtctagcagtctgttatctgg	7	11	4	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	47471790	47471790	C	T	SNP	AMIGO2	ENST00000266581	human	ensembl	69_37n	-1	known	silent	c.996	p.E332	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMIGO2	HGNC	ENSG00000139211	239	0	0	192	27	12.33	-	-	-	T	47471790	C	T	47471790	2	4	438	1	0	0	0	0	0	0	0	1	576	796	28	4		4	AMIGO2	12	47471790	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	40794793	47471790	86380105	86	42530										
PFKM	0	genome.wustl.edu	37	chr12	48528758	48528758	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggttctcgtctcaacatcatCattgtggctgagggtgcaat	11	9	4	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	48528758	48528758	C	T	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	silent	c.780	p.I260	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	224	0	0	161	54	25.12	-	-	-	T	48528758	C	T	48528758	2	4	438	1	0	0	0	0	0	0	0	1	11839	816	29	2		2	PFKM	12	48528758	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	1056968	48528758	85323137	87	42531										
METTL7B	0	genome.wustl.edu	37	chr12	56075783	56075783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggagctgggctgcggaaccgGagccaactttcagttctacc	13	12	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	56075783	56075783	G	A	SNP	METTL7B	ENST00000394252	human	ensembl	69_37n	1	known	missense	c.245	p.G82E	0.991	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	METTL7B	HGNC	ENSG00000170439	98	0	0	56	13	18.84	-	-	-	A	56075783	G	A	56075783	3	1	438	1	0	0	0	0	1	0	0	0	9577	1174	41	2	247	2	METTL7B	12	56075783	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	7547025	56075783	77776112	88	42532										
ERBB3	0	genome.wustl.edu	37	chr12	56482341	56482341	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ccctagataactttgtggtgGatcaaacatcctgtgtcagg	10	9	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	56482341	56482341	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.889	p.D297Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	338	0	0	261	72	21.56	-	-	-	T	56482341	G	T	56482341	3	4	438	1	0	0	0	0	1	0	0	0	5245	1174	41	2	1050	2	ERBB3	12	56482341	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	406558	56482341	77369554	89	42533										
BAZ2A	0	genome.wustl.edu	37	chr12	56992955	56992955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggtggttccgcatagagagtCgccgccgcttggagggggag	19	9	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	56992955	56992955	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.5366	p.R1789Q	1.000	superfamily_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	42	0	0	15	4	21.05	-	-	-	T	56992955	C	T	56992955	3	4	438	1	0	0	0	0	1	0	0	0	1335	884	31	1	363	1	BAZ2A	12	56992955	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	510614	56992955	76858940	90	42534										
TMEM194A	0	genome.wustl.edu	37	chr12	57464509	57464509	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttctctataatctcaactttGaggcaggtttttgtgctgta	8	7	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	57464509	57464509	G	A	SNP	TMEM194A	ENST00000300128	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	1.000	NULL	pfam_DUF2215	-	no_errors	TMEM194A	HGNC	ENSG00000166881	47	0	0	29	14	32.56	-	-	-	A	57464509	G	A	57464509	2	1	438	1	0	0	0	0	0	0	0	1	16211	1277	45	2		2	TMEM194A	12	57464509	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	471554	57464509	76387386	91	42535										
ARHGAP9	0	genome.wustl.edu	37	chr12	57871356	57871356	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgctcccaggcatccagcctCtgcagcagggggcatgcagg	14	14	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	12	57871356	57871356	C	G	SNP	ARHGAP9	ENST00000356411	human	ensembl	69_37n	-1	known	missense	c.642	p.Q214H	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	52	0	0	45	12	21.05	-	-	-	G	57871356	C	G	57871356	3	3	438	1	0	0	0	0	1	0	0	0	891	912	32	2	1613	2	ARHGAP9	12	57871356	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	406847	57871356	75980539	92	42536										
NBEA	0	genome.wustl.edu	37	chr13	35733166	35733166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcctaaggtcacttatgaagCtcataaggaatacctagcca	7	10	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	13	35733166	35733166	C	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.2858	p.A953V	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	162	0	0	171	43	20.09	-	-	-	T	35733166	C	T	35733166	3	4	438	1	0	0	0	0	1	0	0	0	10259	797	28	4	2944	4	NBEA	13	35733166	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		35733166	79436712	93	42537										
DCLK1	0	genome.wustl.edu	37	chr13	36686078	36686078	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	atggcatcggtgatatcggtGaggacctgctcaaaggaatg	14	7	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	13	36686078	36686078	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	silent	c.651	p.L217	1.000	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	138	0	0	110	34	23.61	-	-	-	A	36686078	G	A	36686078	2	1	438	1	0	0	0	0	0	0	0	1	4322	1277	45	2		2	DCLK1	13	36686078	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	952912	36686078	78483800	94	42538										
EML5	0	genome.wustl.edu	37	chr14	89212617	89212617	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tctttgaatcaagtccaactGaaaccaagcgctgatttatg	7	9	2	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	14	89212617	89212617	G	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	nonsense	c.368	p.S123*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	184	0	0	181	44	19.56	-	-	-	T	89212617	G	T	89212617	4	4	438	1	0	0	0	0	0	1	0	0	5137	1294	45	2	5729	2	EML5	14	89212617	Nonsense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		89212617	18136923	95	42539										
SERPINA10	0	genome.wustl.edu	37	chr14	94754811	94754811	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aacttgcctgcaccgtacatCatgggcaccttaatggtctt	8	12	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	14	94754811	94754811	C	A	SNP	SERPINA10	ENST00000261994	human	ensembl	69_37n	-1	known	missense	c.804	p.M268I	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093	132	0	0	66	14	17.5	-	-	-	A	94754811	C	A	94754811	3	1	438	1	0	0	0	0	1	0	0	0	14175	826	29	2	542	2	SERPINA10	14	94754811	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	5542194	94754811	12594729	96	42540										
SETD3	0	genome.wustl.edu	37	chr14	99865308	99865308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tctcttcatatttgggaagcGgagccttttcctccatctgt	8	11	3	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	14	99865308	99865308	G	A	SNP	SETD3	ENST00000331768	human	ensembl	69_37n	-1	known	missense	c.1493	p.P498L	0.936	superfamily_Rubisco_LSMT_subst-bd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576	302	0	0	179	77	30.08	-	-	-	A	99865308	G	A	99865308	3	1	438	1	0	0	0	0	1	0	0	0	14220	1116	39	1	295	1	SETD3	14	99865308	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	5110497	99865308	7484232	97	42541										
TLN2	0	genome.wustl.edu	37	chr15	63128260	63128260	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gaccaggattcagaggccatGaggcggctacaggtaatggt	15	8	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	15	63128260	63128260	G	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.7362	p.M2454I	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	21	0	0	8	4	33.33	-	-	-	T	63128260	G	T	63128260	3	4	438	1	0	0	0	0	1	0	0	0	16043	1290	45	2	7576	2	TLN2	15	63128260	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		63128260	39403132	98	42542										
ZWILCH	0	genome.wustl.edu	37	chr15	66807907	66807907	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcatattgaagaacttcaatCtgaagaaactgccatatctg	6	8	4	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	15	66807907	66807907	C	G	SNP	ZWILCH	ENST00000307897	human	ensembl	69_37n	1	known	missense	c.245	p.S82C	0.929	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442	124	0	0	83	20	19.42	-	-	-	G	66807907	C	G	66807907	3	3	438	1	0	0	0	0	1	0	0	0	18339	913	32	2	259	2	ZWILCH	15	66807907	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	3679647	66807907	35723485	99	42543										
HOMER2	0	genome.wustl.edu	37	chr15	83523513	83523513	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgtgcattgctctcccgaagGgtctgcagctcgatctccca	10	15	3	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	15	83523513	83523513	G	T	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	silent	c.567	p.T189	0.985	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	51	0	0	20	16	44.44	-	-	-	T	83523513	G	T	83523513	2	4	438	1	0	0	0	0	0	0	0	1	7330	1219	43	4		4	HOMER2	15	83523513	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	16715606	83523513	19007879	100	42544										
AKAP13	0	genome.wustl.edu	37	chr15	86123811	86123811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	attcgaatgagcctgatacgCggccactagaagacagggca	12	10	0	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	15	86123811	86123811	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.2512	p.R838W	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	287	0	0	145	42	22.34	-	-	-	T	86123811	C	T	86123811	3	4	438	1	0	0	0	0	1	0	0	0	449	759	27	1	2534	1	AKAP13	15	86123811	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	2600298	86123811	16407581	101	42545										
C16orf91	0	genome.wustl.edu	37	chr16	1470294	1470294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agtctcaggctcctcagaacGatcactgggctctggcacct	10	14	4	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	1470294	1470294	G	A	SNP	C16orf91	ENST00000442039	human	ensembl	69_37n	-1	known	missense	c.352	p.R118C	0.000	NULL	prints_CCSMST1	-	no_errors	C16orf91	HGNC	ENSG00000174109	103	0	0	56	17	23.29	-	-	-	A	1470294	G	A	1470294	3	1	438	1	0	0	0	0	1	0	0	0	1857	1073	37	1		1	C16orf91	16	1470294	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		1470294	88884459	102	42546										
ADCY9	0	genome.wustl.edu	37	chr16	4164421	4164421	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttcattaagtcatcggctatGattcttggcatcacggaatg	9	8	4	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	4164421	4164421	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	silent	c.1023	p.I341	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	89	0	0	41	10	19.61	-	-	-	A	4164421	G	A	4164421	2	1	438	1	0	0	0	0	0	0	0	1	301	1280	45	2		2	ADCY9	16	4164421	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	2694127	4164421	86190332	103	42547										
C16orf89	0	genome.wustl.edu	37	chr16	5097954	5097954	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aatagctttagataattcttCatcttcagcatctgggagaa	7	7	5	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	5097954	5097954	C	T	SNP	C16orf89	ENST00000350219	human	ensembl	69_37n	-1	known	missense	c.994	p.E332K	0.000	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446	31	0	0	44	11	20	-	-	-	T	5097954	C	T	5097954	3	4	438	1	0	0	0	0	1	0	0	0	1855	835	29	2	471	2	C16orf89	16	5097954	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	933533	5097954	85256799	104	42548										
RBBP6	0	genome.wustl.edu	37	chr16	24581246	24581246	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctaaatcatcatcttcctctCagaaggatgaaaaaatcact	4	10	5	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	24581246	24581246	C	G	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.3235	p.Q1079E	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	236	0	0	272	32	10.49	-	-	-	G	24581246	C	G	24581246	3	3	438	1	0	0	0	0	1	0	0	0	13186	827	29	2	3355	2	RBBP6	16	24581246	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	19483292	24581246	65773507	105	42549										
TAOK2	0	genome.wustl.edu	37	chr16	30002257	30002257	+	Frame_Shift_Del	DEL	C	C	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cgggagctggagcagagggtCgcgctgcggcgggcactgct							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	30002257	30002257	C	-	DEL	TAOK2	ENST00000279394	human	ensembl	69_37n	1	known	frame_shift_del	c.2598	p.A867fs	0.610	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	28	0	0	19	11	36.67	-	-	-	-	30002257	C	-	30002257	7	5	438	1	0	1	0	1	0	0	0	0	15640	871	31	0	4140	0	TAOK2	16	30002257	Frame_Shift_Del	DEL	C	TCGA-B6-A0IK-01A-12W-A071-09	5421011	30002257	60352496	106	42550										
CDH8	0	genome.wustl.edu	37	chr16	61689531	61689531	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctagtgctgctcagtggaggAtttccactatcactgattat	9	9	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	61689531	61689531	A	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	silent	c.1749	p.N583	0.092	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	113	0	0	125	28	18.3	-	-	-	G	61689531	A	G	61689531	2	3	438	1	0	0	0	0	0	0	0	1	3145	330	12	5		5	CDH8	16	61689531	Silent	SNP	A	TCGA-B6-A0IK-01A-12W-A071-09	31687274	61689531	28665222	107	42551										
AP1G1	0	genome.wustl.edu	37	chr16	71799443	71799443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tcatgttctggtgaatatccGgacatgatgaggttctttaa	10	6	3	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	16	71799443	71799443	G	A	SNP	AP1G1	ENST00000568327	human	ensembl	69_37n	-1	known	missense	c.691	p.R231W	0.997	NULL	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	-	no_errors	AP1G1	HGNC	ENSG00000166747	151	0	0	112	19	14.5	-	-	-	A	71799443	G	A	71799443	3	1	438	1	0	0	0	0	1	0	0	0	733	1103	39	1	1849	1	AP1G1	16	71799443	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	10109912	71799443	18555310	108	42552										
CTNS	0	genome.wustl.edu	37	chr17	3558297	3558298	+	Frame_Shift_Ins	INS	-	-	T													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agtcttcctaacaggttgtgINSgtgcctcctggagtgacaaa							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	3558297	3558298	-	T	INS	CTNS	ENST00000381870	human	ensembl	69_37n	1	known	frame_shift_ins	c.231_232	p.V77fs	0.954:0.972	NULL	smart_CTNS,tigrfam_LC_transporter	-	no_errors	CTNS	HGNC	ENSG00000040531	73	0	0	60	28	31.82	-	-	-	T	3558298	-	T	3558297	7	5	438	1	0	1	1	0	0	0	0	0	4053	1335	47	0	245	0	CTNS	17	3558297	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09		3558297	77636913	109	42553	347	2								
CTNS	0	genome.wustl.edu	37	chr17	3558301	3558303	+	In_Frame_Del	DEL	CCT	CCT	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	cttcctaacaggttgtggtgCctcctggagtgacaaactcc							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	3558301	3558303	CCT	-	DEL	CTNS	ENST00000381870	human	ensembl	69_37n	1	known	in_frame_del	c.235_237	p.P80in_frame_del	1.000:1.000:0.998	NULL	smart_CTNS,tigrfam_LC_transporter	-	no_errors	CTNS	HGNC	ENSG00000040531	74	0	0	61	28	31.46	-	-	-	-	3558303	CCT	-	3558301	7	5	438	1	0	1	0	1	0	0	0	0	4053	739	26	0	249	0	CTNS	17	3558301	In_Frame_Del	DEL	CCT	TCGA-B6-A0IK-01A-12W-A071-09	4	3558301	77636909	110	42554	347	2								
TP53	0	genome.wustl.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	148	0	0	61	18	22.78	-	-	-	C	7578268	A	C	7578268	3	2	438	1	0	0	0	0	1	0	0	0	16477	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-B6-A0IK-01A-12W-A071-09	4019967	7578268	73616942	111	42555										
CORO6	0	genome.wustl.edu	37	chr17	27946141	27946142	+	Frame_Shift_Del	DEL	GG	GG	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gatgcccacacgcttggagtGgccctcaagtgtgatgatag							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	27946141	27946142	GG	-	DEL	CORO6	ENST00000345068	human	ensembl	69_37n	-1	known	frame_shift_del	c.388_387	p.H130fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549	20	0	0	11	7	38.89	-	-	-	-	27946142	GG	-	27946141	7	5	438	1	0	1	0	1	0	0	0	0	3788	1348	47	0	1062	0	CORO6	17	27946141	Frame_Shift_Del	DEL	GG	TCGA-B6-A0IK-01A-12W-A071-09	20367873	27946141	53249069	112	42556										
NF1	0	genome.wustl.edu	37	chr17	29685607	29685608	+	Frame_Shift_Ins	INS	-	-	C													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgtggtgtaccatgaagaatINSccccaccacaataccaaaca							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	29685607	29685608	-	C	INS	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_ins	c.8080_8081	p.P2696fs	1.000:1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	151	0	0	110	47	29.94	-	-	-	C	29685608	-	C	29685607	7	5	438	1	0	1	1	0	0	0	0	0	10428	1435	50	0	8359	0	NF1	17	29685607	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	1739466	29685607	51509603	113	42557										
PLXDC1	0	genome.wustl.edu	37	chr17	37234233	37234233	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aggtctccatcataggggctGaaggaagtgtcaggggaggc	17	7	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	37234233	37234233	G	A	SNP	PLXDC1	ENST00000315392	human	ensembl	69_37n	-1	known	silent	c.1119	p.F373	0.244	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381	55	0	0	23	7	23.33	-	-	-	A	37234233	G	A	37234233	2	1	438	1	0	0	0	0	0	0	0	1	12191	1281	45	2		2	PLXDC1	17	37234233	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	7548626	37234233	43960977	114	42558										
KRTAP4-12	0	genome.wustl.edu	37	chr17	39280215	39280215	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gcaggtgggctgacagcacaCagactggcagcactggggcc	16	12	0	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	39280215	39280215	C	G	SNP	KRTAP4-12	ENST00000394014	human	ensembl	69_37n	-1	known	missense	c.160	p.V54L	0.002	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-12	HGNC	ENSG00000213416	92	0	0	50	18	26.47	-	-	-	G	39280215	C	G	39280215	3	3	438	1	0	0	0	0	1	0	0	0	8604	478	17	4	449	4	KRTAP4-12	17	39280215	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	2045982	39280215	41914995	115	42559										
CACNA1G	0	genome.wustl.edu	37	chr17	48669383	48669383	+	Frame_Shift_Del	DEL	T	T	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggccctttatttcattgcccTcatgaccttcggcaactacg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	48669383	48669383	T	-	DEL	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	frame_shift_del	c.2840	p.L947fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	72	0	0	39	19	32.2	-	-	-	-	48669383	T	-	48669383	7	5	438	1	0	1	0	1	0	0	0	0	2569	1551	54	0	2890	0	CACNA1G	17	48669383	Frame_Shift_Del	DEL	T	TCGA-B6-A0IK-01A-12W-A071-09	9389168	48669383	32525827	116	42560										
INTS2	0	genome.wustl.edu	37	chr17	59949625	59949625	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttttactttagcaaaatttaCctgagcggccagtaatgcat	7	8	0	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	59949625	59949625	C	A	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	splice_site	c.2802+1	e20+1	1.000	-	-	-	no_errors	INTS2	HGNC	ENSG00000108506	81	0	0	74	84	53.16	-	-	-	A	59949625	C	A	59949625	5	1	438	1	0	0	0	0	0	0	1	0	7832	521	18	4	835	4	INTS2	17	59949625	Splice_Site	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	11280242	59949625	21245585	117	42561										
GPR142	0	genome.wustl.edu	37	chr17	72368281	72368281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	actcacccagaacactggacGaggtcctcaagtgggctcac	10	14	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	72368281	72368281	G	A	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	missense	c.931	p.E311K	0.644	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	36	0	0	15	6	28.57	-	-	-	A	72368281	G	A	72368281	3	1	438	1	0	0	0	0	1	0	0	0	6700	1059	37	1	945	1	GPR142	17	72368281	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	12418656	72368281	8826929	118	42562										
C17orf77	0	genome.wustl.edu	37	chr17	72588620	72588620	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gggactggtcaggtttgcacGggagtgcacgtaggagccaa	17	8	1	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	17	72588620	72588620	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	69_37n	1	known	silent	c.435	p.T145	0.001	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352	137	0	0	168	35	17.24	-	-	-	A	72588620	G	A	72588620	2	1	438	1	0	0	0	0	0	0	0	1	1898	1103	39	1		1	C17orf77	17	72588620	Silent	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	220339	72588620	8606590	119	42563										
SMAD2	0	genome.wustl.edu	37	chr18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tgaagctttatgacatgcttGagcaacgcactgaaggggat	12	7	0	4			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	18	45368211	45368211	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	nonsense	c.1391	p.S464*	1.000	pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	104	0	0	48	17	26.15	-	-	-	C	45368211	G	C	45368211	4	2	438	1	0	0	0	0	0	1	0	0	14847	1294	45	2	16	2	SMAD2	18	45368211	Nonsense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		45368211	32709037	120	42564										
MUC16	0	genome.wustl.edu	37	chr19	9056568	9056568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctgagatggctcgtggaactCcagtggtggcaaatgaagtc	14	8	0	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	9056568	9056568	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.30878	p.G10293E	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	133	0	0	102	35	25.55	-	-	-	T	9056568	C	T	9056568	3	4	438	1	0	0	0	0	1	0	0	0	10045	855	30	2	12973	2	MUC16	19	9056568	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		9056568	50072415	121	42565										
CACNA1A	0	genome.wustl.edu	37	chr19	13370401	13370401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ggccagccttctcccgtggaCacggtgaagagggtcagcag	15	12	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	13370401	13370401	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	silent	c.4365	p.V1455	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	29	0	0	28	11	27.5	-	-	-	T	13370401	C	T	13370401	2	4	438	1	0	0	0	0	0	0	0	1	2563	465	17	4		4	CACNA1A	19	13370401	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	4313833	13370401	45758582	122	42566										
CC2D1A	0	genome.wustl.edu	37	chr19	14034266	14034266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agctcatacggcagcagcacGaggtgagggggaggccccca	16	12	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	14034266	14034266	G	A	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1762	p.E588K	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	63	0	0	55	15	21.43	-	-	-	A	14034266	G	A	14034266	3	1	438	1	0	0	0	0	1	0	0	0	2751	1059	37	1	1820	1	CC2D1A	19	14034266	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	663865	14034266	45094717	123	42567										
UPF1	0	genome.wustl.edu	37	chr19	18966900	18966900	+	Splice_Site	DEL	T	T	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	agatcaggaacatggacaggTgtgtgtcgagtccatccctc							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	18966900	18966900	T	-	DEL	UPF1	ENST00000262803	human	ensembl	69_37n	1	known	splice_site_del	c.1709+2	e12+2	0.998	-	-	-	no_errors	UPF1	HGNC	ENSG00000005007	30	0	0	11	9	40.91	-	-	-	-	18966900	T	-	18966900	8	5	438	1	0	1	0	1	0	0	1	0	17100	1710	59	0	1757	0	UPF1	19	18966900	Splice_Site	DEL	T	TCGA-B6-A0IK-01A-12W-A071-09	4932634	18966900	40162083	124	42568										
GATAD2A	0	genome.wustl.edu	37	chr19	19612071	19612071	+	Frame_Shift_Del	DEL	C	C	-													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	gacaaccaaccagaagaaggCgctcaaggtggagcacacca							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	19612071	19612071	C	-	DEL	GATAD2A	ENST00000404158	human	ensembl	69_37n	1	known	frame_shift_del	c.1349	p.A450fs	0.995	pfam_Znf_GATA	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2A	HGNC	ENSG00000167491	17	0	0	8	5	38.46	-	-	-	-	19612071	C	-	19612071	7	5	438	1	0	1	0	1	0	0	0	0	6310	768	27	0	1376	0	GATAD2A	19	19612071	Frame_Shift_Del	DEL	C	TCGA-B6-A0IK-01A-12W-A071-09	645171	19612071	39516912	125	42569										
ZNF506	0	genome.wustl.edu	37	chr19	19906419	19906419	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tatcactttttggaaagaatCttttatgctctgctctgacc	6	9	4	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	19906419	19906419	C	G	SNP	ZNF506	ENST00000443905	human	ensembl	69_37n	-1	known	missense	c.277	p.D93H	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665	176	0	0	131	44	25	-	-	-	G	19906419	C	G	19906419	3	3	438	1	0	0	0	0	1	0	0	0	18048	913	32	2	1061	2	ZNF506	19	19906419	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	294348	19906419	39222564	126	42570										
SIGLEC5	0	genome.wustl.edu	37	chr19	52130890	52130890	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctgttcccctccagcggcttCtcctcaagccgccagcacag	8	19	2	0			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	52130890	52130890	C	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	silent	c.1107	p.E369	0.002	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	47	0	0	35	4	10.26	-	-	-	T	52130890	C	T	52130890	2	4	438	1	0	0	0	0	0	0	0	1	14400	912	32	2		2	SIGLEC5	19	52130890	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	32224471	52130890	6998093	127	42571										
NLRP4	0	genome.wustl.edu	37	chr19	56379195	56379195	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttagacacaggcgtgcccctTttgtgtgaagccctgtgcag	12	11	0	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	56379195	56379195	T	A	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	silent	c.2307	p.L769	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	80	0	0	57	17	22.97	-	-	-	A	56379195	T	A	56379195	2	1	438	1	0	0	0	0	0	0	0	1	10551	1828	64	5		5	NLRP4	19	56379195	Silent	SNP	T	TCGA-B6-A0IK-01A-12W-A071-09	4248305	56379195	2749788	128	42572										
ZNF587	0	genome.wustl.edu	37	chr19	58371378	58371378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aaaatccttttctgaatgttCcagtctcattaaacacagga	5	9	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	19	58371378	58371378	C	G	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.1598	p.S533C	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	613	0	0	352	107	23.21	-	-	-	G	58371378	C	G	58371378	3	3	438	1	0	0	0	0	1	0	0	0	18116	855	30	2	1608	2	ZNF587	19	58371378	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	1992183	58371378	757605	129	42573										
TGM2	0	genome.wustl.edu	37	chr20	36766744	36766744	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tccttctcggccagtttgttCaggtggttcgcccttgtgaa	11	11	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	20	36766744	36766744	C	T	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	silent	c.1386	p.L462	0.991	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	138	0	0	65	18	21.69	-	-	-	T	36766744	C	T	36766744	2	4	438	1	0	0	0	0	0	0	0	1	15925	813	29	2		2	TGM2	20	36766744	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09		36766744	26258776	130	42574										
ADNP	0	genome.wustl.edu	37	chr20	49510210	49510210	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ttgccacctagacccagtctCattgactgaccaacactgta	6	14	1	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	20	49510210	49510210	C	T	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.1041	p.M347I	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	154	0	0	121	41	25.31	-	-	-	T	49510210	C	T	49510210	3	4	438	1	0	0	0	0	1	0	0	0	323	826	29	2	2271	2	ADNP	20	49510210	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	12743466	49510210	13515310	131	42575										
IL17RA	0	genome.wustl.edu	37	chr22	17579742	17579742	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aacgtttgtgcgtcaggtttGagtttctgtccaaactgagg	12	7	2	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	22	17579742	17579742	G	C	SNP	IL17RA	ENST00000319363	human	ensembl	69_37n	1	known	missense	c.388	p.E130Q	0.009	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663	61	0	0	28	14	33.33	-	-	-	C	17579742	G	C	17579742	3	2	438	1	0	0	0	0	1	0	0	0	7693	1291	45	2	402	2	IL17RA	22	17579742	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		17579742	33724824	132	42576										
SCML1	0	genome.wustl.edu	37	chrX	17768113	17768113	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	acgagacattctcctaccctGaaagttacagccccacttta	5	14	1	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	17768113	17768113	G	A	SNP	SCML1	ENST00000380041	human	ensembl	69_37n	1	known	missense	c.403	p.E135K	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634	346	0	0	228	58	20.28	-	-	-	A	17768113	G	A	17768113	3	1	438	1	0	0	0	0	1	0	0	0	13997	1291	45	2	424	2	SCML1	23	17768113	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09		17768113	137502447	133	42577										
MAGEB3	0	genome.wustl.edu	37	chrX	30254772	30254772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	acacttcatatttggggagcCcagaaagctcatcacccaag	8	12	3	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	30254772	30254772	C	T	SNP	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	missense	c.731	p.P244L	0.905	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	114	0	0	152	56	26.79	-	-	-	T	30254772	C	T	30254772	3	4	438	1	0	0	0	0	1	0	0	0	9248	623	22	4	733	4	MAGEB3	23	30254772	Missense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	12486659	30254772	125015788	134	42578										
MED12	0	genome.wustl.edu	37	chrX	70357674	70357674	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tccagccagccttaccagagCacccacccttctaccaatcc	4	20	1	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	70357674	70357674	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	silent	c.5934	p.S1978	0.944	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	105	0	0	64	18	21.95	-	-	-	T	70357674	C	T	70357674	2	4	438	1	0	0	0	0	0	0	0	1	9499	709	25	4		4	MED12	23	70357674	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	40102902	70357674	84912886	135	42579										
DRP2	0	genome.wustl.edu	37	chrX	100493982	100493982	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctttataggcctttatggaaGaagtcaagtctcggggcccc	11	10	2	1			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	100493982	100493982	G	A	SNP	DRP2	ENST00000395209	human	ensembl	69_37n	1	known	missense	c.451	p.E151K	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385	171	1	0.58	149	36	19.35	-	-	-	A	100493982	G	A	100493982	3	1	438	1	0	0	0	0	1	0	0	0	4799	943	33	2	465	2	DRP2	23	100493982	Missense_Mutation	SNP	G	TCGA-B6-A0IK-01A-12W-A071-09	30136308	100493982	54776578	136	42580										
GPRASP1	0	genome.wustl.edu	37	chrX	101912418	101912418	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	aatttacccgagatttcattCgagattcaggtgttgtctca	8	8	3	2			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	101912418	101912418	C	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	nonsense	c.3577	p.R1193*	0.347	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	487	0	0	264	99	27.27	-	-	-	T	101912418	C	T	101912418	4	4	438	1	0	0	0	0	0	1	0	0	6773	876	31	1	3579	1	GPRASP1	23	101912418	Nonsense_Mutation	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	1418436	101912418	53358142	137	42581										
SASH3	0	genome.wustl.edu	37	chrX	128926635	128926636	+	Frame_Shift_Ins	INS	-	-	G													0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	tccagatcattgaaaagccaINScctgtgggcacgtggctggg							TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	128926635	128926636	-	G	INS	SASH3	ENST00000356892	human	ensembl	69_37n	1	known	frame_shift_ins	c.624_625	p.P208fs	0.805:1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122	180	0	0	96	58	37.66	-	-	-	G	128926636	-	G	128926635	7	5	438	1	0	1	1	0	0	0	0	0	13936	146	6	0	646	0	SASH3	23	128926635	Frame_Shift_Ins	INS	-	TCGA-B6-A0IK-01A-12W-A071-09	27014217	128926635	26343925	138	42582										
SLITRK2	0	genome.wustl.edu	37	chrX	144904063	144904063	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	57	1.57262898712706e-17	3.40905349794239	4.65220458553792	2.9187967310033	0.0345530524795607	0.286380384110257	40	ctgtgcgaagaaaaggaaaaCgtactgaatatcaactgtga	10	6	1	3			TCGA-B6-A0IK-01A-12W-A071-09	TCGA-B6-A0IK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5b1f426-562e-44e4-bcce-ce2ff6d969c8	79f55c96-edea-4b81-a4de-5df5e55df162	X	144904063	144904063	C	T	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	silent	c.120	p.N40	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	114	0	0	41	31	42.47	-	-	-	T	144904063	C	T	144904063	2	4	438	1	0	0	0	0	0	0	0	1	14832	535	19	1		1	SLITRK2	23	144904063	Silent	SNP	C	TCGA-B6-A0IK-01A-12W-A071-09	15977428	144904063	10366497	139	42583										
KCNH1	0	genome.wustl.edu	37	chr1	210857470	210857470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gtttcacatcgctgatcttcCggaacacaatctggagagag	10	10	3	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	1	210857470	210857470	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.2123	p.R708Q	1.000	prints_K_chnl_volt-dep_EAG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	150	1	0.66	58	27	31.76	-	-	-	T	210857470	C	T	210857470	3	4	439	1	0	0	0	0	1	0	0	0	8085	652	23	1	850	1	KCNH1	1	210857470	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09		210857470	38393151	1	42584										
STK25	0	genome.wustl.edu	37	chr2	242440175	242440175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	caagtccagtgctgagccgcCgcccaggtactccatgatga	11	14	0	3			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	2	242440175	242440175	C	T	SNP	STK25	ENST00000316586	human	ensembl	69_37n	-1	known	missense	c.298	p.G100S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK25	HGNC	ENSG00000115694	33	0	0	11	10	47.62	-	-	-	T	242440175	C	T	242440175	3	4	439	1	0	0	0	0	1	0	0	0	15385	652	23	1	1018	1	STK25	2	242440175	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09		242440175	759198	2	42585										
EFHB	0	genome.wustl.edu	37	chr3	19975051	19975051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ctttcccactaattcctctaCcccttcagggccactagcca	4	18	2	0			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	19975051	19975051	C	T	SNP	EFHB	ENST00000295824	human	ensembl	69_37n	-1	known	missense	c.460	p.V154I	0.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHB	HGNC	ENSG00000163576	136	0	0	63	45	41.67	-	-	-	T	19975051	C	T	19975051	3	4	439	1	0	0	0	0	1	0	0	0	4980	507	18	4	2093	4	EFHB	3	19975051	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09		19975051	178047379	3	42586										
TRIM71	0	genome.wustl.edu	37	chr3	32933156	32933156	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	aggaaccatcgggtacagatGtttgaatccaacggcagctt	11	9	0	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	32933156	32933156	G	T	SNP	TRIM71	ENST00000383763	human	ensembl	69_37n	1	known	missense	c.2460	p.M820I	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557	36	0	0	26	8	23.53	-	-	-	T	32933156	G	T	32933156	3	4	439	1	0	0	0	0	1	0	0	0	16640	1377	48	4	2474	4	TRIM71	3	32933156	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09	12958105	32933156	165089274	4	42587										
ABLIM2	0	genome.wustl.edu	37	chr4	8089995	8089996	+	Frame_Shift_Ins	INS	-	-	G													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ttgaaggtcactcggtccccINSgggggggaagggcagcctga							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	4	8089995	8089996	-	G	INS	ABLIM2	ENST00000447017	human	ensembl	69_37n	-1	known	frame_shift_ins	c.355_354	p.G118fs	1.000:0.001	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	21	0	0	24	4	14.29	-	-	-	G	8089996	-	G	8089995	7	5	439	1	0	1	1	0	0	0	0	0	95	652	23	0	1708	0	ABLIM2	4	8089995	Frame_Shift_Ins	INS	-	TCGA-B6-A0IM-01A-11W-A050-09		8089995	183064281	5	42588										
C5orf42	0	genome.wustl.edu	37	chr5	37213798	37213798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ctgcctcaggatgaacaccgCccaccattccacactcaaaa	5	17	2	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	37213798	37213798	C	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2783	p.G928A	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	171	0	0	81	37	31.36	-	-	-	G	37213798	C	G	37213798	3	3	439	1	0	0	0	0	1	0	0	0	2322	739	26	4	6958	4	C5orf42	5	37213798	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09		37213798	143701462	6	42589										
NNT	0	genome.wustl.edu	37	chr5	43702838	43702838	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gaggtctggaaatcaaagcaGgtaaagtttcagacttgtat	11	5	3	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	43702838	43702838	G	C	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	missense	c.3111	p.Q1037H	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	77	0	0	51	26	33.77	-	-	-	C	43702838	G	C	43702838	3	2	439	1	0	0	0	0	1	0	0	0	10582	1014	35	4	3189	4	NNT	5	43702838	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09	6489040	43702838	137212422	7	42590										
MAP3K1	0	genome.wustl.edu	37	chr5	56176548	56176548	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ttgtttttagccgcacaagtCagctgtccatatcaacactg	7	11	2	0			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56176548	56176548	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.2098	p.Q700*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	215	1	0.46	120	51	29.82	-	-	-	T	56176548	C	T	56176548	4	4	439	1	0	0	0	0	0	1	0	0	9314	827	29	2	2144	2	MAP3K1	5	56176548	Nonsense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	12473710	56176548	124738712	8	42591										
MAP3K1	0	genome.wustl.edu	37	chr5	56189442	56189442	+	Frame_Shift_Del	DEL	C	C	-													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ctcttcgttgtttagaacttCaacctcaggacagacctcca							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56189442	56189442	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.4474	p.Q1492fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	131	0	0	64	26	27.37	-	-	-	-	56189442	C	-	56189442	7	5	439	1	0	1	0	1	0	0	0	0	9314	827	29	0	4552	0	MAP3K1	5	56189442	Frame_Shift_Del	DEL	C	TCGA-B6-A0IM-01A-11W-A050-09	12894	56189442	124725818	9	42592										
APC	0	genome.wustl.edu	37	chr5	112175144	112175144	+	Frame_Shift_Del	DEL	G	G	-													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	catctttgtcatcagctgaaGatgaaataggatgtaatcag							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	112175144	112175144	G	-	DEL	APC	ENST00000257430	human	ensembl	69_37n	1	known	frame_shift_del	c.3853	p.D1285fs	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	150	0	0	113	58	33.33	-	-	-	-	112175144	G	-	112175144	7	5	439	1	0	1	0	1	0	0	0	0	764	942	33	0	3911	0	APC	5	112175144	Frame_Shift_Del	DEL	G	TCGA-B6-A0IM-01A-11W-A050-09	55985702	112175144	68740116	10	42593										
RAD50	0	genome.wustl.edu	37	chr5	131926953	131926953	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ggctgagaaaaacagcaatgTagaaaccttaaaaatggaag	10	5	0	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	131926953	131926953	T	C	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	missense	c.1490	p.V497A	0.996	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	112	0	0	70	37	34.58	-	-	-	C	131926953	T	C	131926953	3	2	439	1	0	0	0	0	1	0	0	0	13067	1638	57	5	1528	5	RAD50	5	131926953	Missense_Mutation	SNP	T	TCGA-B6-A0IM-01A-11W-A050-09	19751809	131926953	48988307	11	42594										
USP42	0	genome.wustl.edu	37	chr7	6194543	6194546	+	Frame_Shift_Del	DEL	GGCG	GGCG	-													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gccccagcagcccccgcgcaGgcgcgccccacgccctcgcc							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	GGCG	GGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	6194543	6194546	GGCG	-	DEL	USP42	ENST00000306177	human	ensembl	69_37n	1	known	frame_shift_del	c.3358_3361	p.G1120fs	0.004:0.002:0.001:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP42	HGNC	ENSG00000106346	19	0	0	11	4	26.67	-	-	-	-	6194546	GGCG	-	6194543	7	5	439	1	0	1	0	1	0	0	0	0	17170	1000	35	0		0	USP42	7	6194543	Frame_Shift_Del	DEL	GGCG	TCGA-B6-A0IM-01A-11W-A050-09		6194543	152944120	12	42595										
GLI3	0	genome.wustl.edu	37	chr7	42007317	42007317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ctccatccatttggtccctgCcgggtttctcctggcttgca	9	15	1	0			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	42007317	42007317	C	G	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.2308	p.A770P	0.972	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	385	0	0	144	160	52.46	-	-	-	G	42007317	C	G	42007317	3	3	439	1	0	0	0	0	1	0	0	0	6491	739	26	4	2442	4	GLI3	7	42007317	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	35812774	42007317	117131346	13	42596										
SAMD9	0	genome.wustl.edu	37	chr7	92733180	92733180	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gaatgtgcatagccaaggtaGttcccccacagcctggatga	11	11	0	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	92733180	92733180	G	C	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2231	p.T744S	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	151	0	0	45	24	34.78	-	-	-	C	92733180	G	C	92733180	3	2	439	1	0	0	0	0	1	0	0	0	13912	1029	36	4	2542	4	SAMD9	7	92733180	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09	50725863	92733180	66405483	14	42597										
ZNF277	0	genome.wustl.edu	37	chr7	111982649	111982649	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	acctatgaaaatgacactctCctgtgtacactatctgacag	6	11	2	3			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	111982649	111982649	C	G	SNP	ZNF277	ENST00000361822	human	ensembl	69_37n	1	known	silent	c.1218	p.L406	0.983	NULL	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839	66	0	0	47	42	47.19	-	-	-	G	111982649	C	G	111982649	2	3	439	1	0	0	0	0	0	0	0	1	17908	842	30	2		2	ZNF277	7	111982649	Silent	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	19249469	111982649	47156014	15	42598										
OR2F1	0	genome.wustl.edu	37	chr7	143657386	143657386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	atttttctccctggccttggGtgggattgagtttgttctcc	11	9	2	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	143657386	143657386	G	A	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	missense	c.323	p.G108D	0.690	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	342	0	0	219	233	51.55	-	-	-	A	143657386	G	A	143657386	3	1	439	1	0	0	0	0	1	0	0	0	11069	1261	44	4	325	4	OR2F1	7	143657386	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09	31674737	143657386	15481277	16	42599										
LMBR1	0	genome.wustl.edu	37	chr7	156521383	156521383	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	acagcgggatacaccaaattTctttcccatgctgaagcctt	7	12	1	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	156521383	156521383	T	C	SNP	LMBR1	ENST00000354505	human	ensembl	69_37n	-1	known	silent	c.993	p.R331	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983	414	0	0	284	81	22.13	-	-	-	C	156521383	T	C	156521383	2	2	439	1	0	0	0	0	0	0	0	1	8896	1780	62	5		5	LMBR1	7	156521383	Silent	SNP	T	TCGA-B6-A0IM-01A-11W-A050-09	12863997	156521383	2617280	17	42600										
UNC13B	0	genome.wustl.edu	37	chr9	35376118	35376118	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	aggtctggacggccactaccCcaacctactgctatgagtgt	10	13	1	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	9	35376118	35376118	C	G	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.1498	p.P500A	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	56	0	0	26	9	25	-	-	-	G	35376118	C	G	35376118	3	3	439	1	0	0	0	0	1	0	0	0	17082	623	22	4	1516	4	UNC13B	9	35376118	Missense_Mutation	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09		35376118	105837313	18	42601										
GATA3	0	genome.wustl.edu	37	chr10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gtcctccctgagccacatctINScgcccttcagccactccagc							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	10	8115873	8115874	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	74	0	0	95	30	24	-	-	-	C	8115874	-	C	8115873	7	5	439	1	0	1	1	0	0	0	0	0	6305	1551	54	0	1240	0	GATA3	10	8115873	Frame_Shift_Ins	INS	-	TCGA-B6-A0IM-01A-11W-A050-09		8115873	127418874	19	42602										
C1QTNF4	0	genome.wustl.edu	37	chr11	47611487	47611487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ttgctgtaggcgccgtagccGtcgtggtcgtggctgagcag	17	10	0	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	47611487	47611487	G	A	SNP	C1QTNF4	ENST00000302514	human	ensembl	69_37n	-1	known	silent	c.876	p.D292	0.962	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247	54	0	0	32	14	30.43	-	-	-	A	47611487	G	A	47611487	2	1	439	1	0	0	0	0	0	0	0	1	1984	1136	40	1		1	C1QTNF4	11	47611487	Silent	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		47611487	87395029	20	42603										
RIN1	0	genome.wustl.edu	37	chr11	66100832	66100832	+	Frame_Shift_Del	DEL	C	C	-													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gggtgtgggcctgacccaggCcactcagcagggccaggctg							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	66100832	66100832	C	-	DEL	RIN1	ENST00000311320	human	ensembl	69_37n	-1	known	frame_shift_del	c.1772	p.G591fs	0.509	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791	12	0	0	15	14	46.67	-	-	-	-	66100832	C	-	66100832	7	5	439	1	0	1	0	1	0	0	0	0	13457	739	26	0	587	0	RIN1	11	66100832	Frame_Shift_Del	DEL	C	TCGA-B6-A0IM-01A-11W-A050-09	18489345	66100832	68905684	21	42604										
TRIP4	0	genome.wustl.edu	37	chr15	64701983	64701983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	accattgactttgcaggaagGaagatcctggaagaagaaaa	11	6	0	4			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	64701983	64701983	G	A	SNP	TRIP4	ENST00000560475	human	ensembl	69_37n	1	putative	missense	c.67	p.E23K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIP4	HGNC	ENSG00000103671	198	1	0.5	110	40	26.67	-	-	-	A	64701983	G	A	64701983	3	1	439	1	0	0	0	0	1	0	0	0	16654	1165	41	2	1025	2	TRIP4	15	64701983	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		64701983	37829409	22	42605										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1798259	1798259	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ccctaggcatgggcagcagtGacgagtggtctgatgttcaa	14	9	2	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	16	1798259	1798259	G	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.1006	p.D336Y	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	25	0	0	10	13	56.52	-	-	-	T	1798259	G	T	1798259	3	4	439	1	0	0	0	0	1	0	0	0	9357	1290	45	2	1032	2	MAPK8IP3	16	1798259	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		1798259	88556494	23	42606										
GPS2	0	genome.wustl.edu	37	chr17	7217398	7217398	+	Splice_Site	DEL	C	C	-													0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ggtggtttctttagtcctcaCcctgcatgctgaggagatga							TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	17	7217398	7217398	C	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	splice_site_del	c.397+1	e4+1	1.000	-	-	-	no_errors	GPS2	HGNC	ENSG00000132522	340	0	0	34	50	56.82	-	-	-	-	7217398	C	-	7217398	8	5	439	1	0	1	0	1	0	0	1	0	6784	521	18	0	613	0	GPS2	17	7217398	Splice_Site	DEL	C	TCGA-B6-A0IM-01A-11W-A050-09		7217398	73977812	24	42607										
NLRP5	0	genome.wustl.edu	37	chr19	56538873	56538873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gtcagaggtcgtgtctccccGttacctgttagttagaggaa	12	9	2	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	56538873	56538873	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	missense	c.1274	p.R425H	0.019	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	59	0	0	30	13	30.23	-	-	-	A	56538873	G	A	56538873	3	1	439	1	0	0	0	0	1	0	0	0	10552	1145	40	1	1300	1	NLRP5	19	56538873	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		56538873	2590110	25	42608										
ZNF416	0	genome.wustl.edu	37	chr19	58083540	58083540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	tccacatttgctgctgtcacGaggcctctccacagtgtgag	10	13	2	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	58083540	58083540	G	A	SNP	ZNF416	ENST00000196489	human	ensembl	69_37n	-1	known	missense	c.1732	p.R578C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817	165	0	0	67	30	30.93	-	-	-	A	58083540	G	A	58083540	3	1	439	1	0	0	0	0	1	0	0	0	17989	1058	37	1	56	1	ZNF416	19	58083540	Missense_Mutation	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09	1544667	58083540	1045443	26	42609										
PRND	0	genome.wustl.edu	37	chr20	4705266	4705266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	ctcttcagccacctctctgcGgtccagacgaggggcatcaa	10	15	4	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	20	4705266	4705266	G	A	SNP	PRND	ENST00000305817	human	ensembl	69_37n	1	known	silent	c.69	p.A23	0.000	pfam_Doppel	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864	35	0	0	29	13	30.95	-	-	-	A	4705266	G	A	4705266	2	1	439	1	0	0	0	0	0	0	0	1	12624	1103	39	1		1	PRND	20	4705266	Silent	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		4705266	58320254	27	42610										
SREBF2	0	genome.wustl.edu	37	chr22	42281016	42281016	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gcaagctgggcttcctggccGtgagtacccttcggttccct	12	14	0	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	42281016	42281016	G	A	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	splice_site	c.2208+1	e11+1	1.000	-	-	-	no_errors	SREBF2	HGNC	ENSG00000198911	292	0	0	149	97	39.43	-	-	-	A	42281016	G	A	42281016	5	1	439	1	0	0	0	0	0	0	1	0	15233	1159	40	1	2251	1	SREBF2	22	42281016	Splice_Site	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		42281016	9023550	28	42611										
CELSR1	0	genome.wustl.edu	37	chr22	46795613	46795613	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gaggtgcaggtgccagctcaCctggtccatcccatagtcca	11	14	1	0			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	46795613	46795613	C	A	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	splice_site	c.5412+1	e10+1	1.000	-	-	-	no_errors	CELSR1	HGNC	ENSG00000075275	119	0	0	43	22	33.85	-	-	-	A	46795613	C	A	46795613	5	1	439	1	0	0	0	0	0	0	1	0	3250	521	18	4	3735	4	CELSR1	22	46795613	Splice_Site	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	4514597	46795613	4508953	29	42612										
TRO	0	genome.wustl.edu	37	chrX	54955782	54955782	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	tttggcagtgcacccacaacGagcacagtcttcagtagtgc	10	12	2	0			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	54955782	54955782	G	A	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	silent	c.2625	p.T875	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	47	0	0	37	12	24.49	-	-	-	A	54955782	G	A	54955782	2	1	439	1	0	0	0	0	0	0	0	1	16670	1045	37	1		1	TRO	23	54955782	Silent	SNP	G	TCGA-B6-A0IM-01A-11W-A050-09		54955782	100314778	30	42613										
STARD8	0	genome.wustl.edu	37	chrX	67938433	67938433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	tcaatgccccgtgaacggcgCgattcaggtgttggggcctc	14	12	2	1			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	67938433	67938433	C	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	silent	c.1677	p.R559	0.259	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	87	0	0	43	19	30.65	-	-	-	T	67938433	C	T	67938433	2	4	439	1	0	0	0	0	0	0	0	1	15354	755	27	1		1	STARD8	23	67938433	Silent	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	12982651	67938433	87332127	31	42614										
PNCK	0	genome.wustl.edu	37	chrX	152937334	152937334	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	1	1	0.429693637077769	0	0.628013777267509	1	1	0	gcagaggccccagccaggcaCcttgaggtcccggtgcacga	14	15	0	2			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	152937334	152937334	C	A	SNP	PNCK	ENST00000447676	human	ensembl	69_37n	-1	known	splice_site	c.663+1	e5+1	1.000	-	-	-	no_errors	PNCK	HGNC	ENSG00000130822	29	0	0	38	14	26.92	-	-	-	A	152937334	C	A	152937334	5	1	439	1	0	0	0	0	0	0	1	0	12219	521	18	4	644	4	PNCK	23	152937334	Splice_Site	SNP	C	TCGA-B6-A0IM-01A-11W-A050-09	84998901	152937334	2333226	32	42615										
TCEB3	0	genome.wustl.edu	37	chr1	24078341	24078342	+	Frame_Shift_Del	DEL	CC	CC	-													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cctacctcagctatgaccagCcccggaagaaaaagaaaaag							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	24078341	24078342	CC	-	DEL	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	frame_shift_del	c.1324_1325	p.R443fs	1.000:1.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	32	0	0	49	122	71.35	-	-	-	-	24078342	CC	-	24078341	7	5	440	1	0	1	0	1	0	0	0	0	15776	739	26	0	1338	0	TCEB3	1	24078341	Frame_Shift_Del	DEL	CC	TCGA-B6-A0IN-01A-11W-A050-09		24078341	225172280	1	42616										
TIE1	0	genome.wustl.edu	37	chr1	43773137	43773137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cgttttgggcagagctgccaGgagcagtgcccaggcatatc	14	11	0	1			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	43773137	43773137	G	A	SNP	TIE1	ENST00000372476	human	ensembl	69_37n	1	known	silent	c.807	p.Q269	1.000	smart_EGF-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	102	0	0	41	11	21.15	-	-	-	A	43773137	G	A	43773137	2	1	440	1	0	0	0	0	0	0	0	1	15988	991	35	4		4	TIE1	1	43773137	Silent	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	19694796	43773137	205477484	2	42617										
CYB5R1	0	genome.wustl.edu	37	chr1	202935526	202935527	+	RNA	INS	-	-	GT													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ctcacagcttggaggatgcaINSgagccaagtgggggaagggg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	202935526	202935527	-	GT	INS	CYB5R1	ENST00000478009	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	26	0	0	9	3	25	-	-	-	GT	202935527	-	GT	202935526	6	5	440	0	1	1	1	0	0	0	0	0	4157	203	7	0		0	CYB5R1	1	202935526	RNA	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	159162389	202935526	46315095	3	42618										
MTR	0	genome.wustl.edu	37	chr1	236959013	236959013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gactcgacaacatgtcacccGcgctccaagacctgtcgcaa	8	16	1	1			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	236959013	236959013	G	A	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	missense	c.10	p.A4T	0.159	NULL	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	45	0	0	21	8	27.59	-	-	-	A	236959013	G	A	236959013	3	1	440	1	0	0	0	0	1	0	0	0	10030	1087	38	1	12	1	MTR	1	236959013	Missense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	34023487	236959013	12291608	4	42619										
EIF2AK3	0	genome.wustl.edu	37	chr2	88857363	88857364	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cactgtttttcctggaaagtINSccaagtcctcaaatacagca							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	88857363	88857364	-	C	INS	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3242_3241	p.D1081fs	1.000:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	430	0	0	227	62	21.45	-	-	-	C	88857364	-	C	88857363	7	5	440	1	0	1	1	0	0	0	0	0	5033	1667	58	0	112	0	EIF2AK3	2	88857363	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09		88857363	154342010	5	42620										
BIN1	0	genome.wustl.edu	37	chr2	127806177	127806177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tccttgtgctggttccagtcGctctccttcacgcccatgag	9	15	2	1			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	127806177	127806177	G	A	SNP	BIN1	ENST00000316724	human	ensembl	69_37n	-1	known	silent	c.1707	p.S569	0.075	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717	26	0	0	6	5	45.45	-	-	-	A	127806177	G	A	127806177	2	1	440	1	0	0	0	0	0	0	0	1	1437	1078	38	1		1	BIN1	2	127806177	Silent	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	38948814	127806177	115393196	6	42621										
CCNT2	0	genome.wustl.edu	37	chr2	135676546	135676547	+	Frame_Shift_Ins	INS	-	-	A													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tcgtgccgccagcaggcggcINScaacctcatccaggagatgg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	135676546	135676547	-	A	INS	CCNT2	ENST00000264157	human	ensembl	69_37n	1	known	frame_shift_ins	c.122_123	p.N42fs	1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258	137	0	0	61	20	24.69	-	-	-	A	135676547	-	A	135676546	7	5	440	1	0	1	1	0	0	0	0	0	2964	739	26	0	124	0	CCNT2	2	135676546	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	7870369	135676546	107522827	7	42622										
CDCA7	0	genome.wustl.edu	37	chr2	174230273	174230273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	aaattacagaggaggagttgGagaacgtctgcagcaattct	12	6	2	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	174230273	174230273	G	A	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	missense	c.988	p.E330K	0.998	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	94	0	0	49	8	14.04	-	-	-	A	174230273	G	A	174230273	3	1	440	1	0	0	0	0	1	0	0	0	3119	1175	41	2	1014	2	CDCA7	2	174230273	Missense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	38553727	174230273	68969100	8	42623										
SP3	0	genome.wustl.edu	37	chr2	174819671	174819674	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tctatagagttcactgtaacTgtttgtagatttggcaactg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	174819671	174819674	TGTT	-	DEL	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	frame_shift_del	c.1569_1566	p.T523fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	86	0	0	52	12	18.75	-	-	-	-	174819674	TGTT	-	174819671	7	5	440	1	0	1	0	1	0	0	0	0	15054	1567	55	0	792	0	SP3	2	174819671	Frame_Shift_Del	DEL	TGTT	TCGA-B6-A0IN-01A-11W-A050-09	589398	174819671	68379702	9	42624										
TTN	0	genome.wustl.edu	37	chr2	179425252	179425252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ttatagctacactctctaggGgctcaccaacaccatattta	5	12	2	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	179425252	179425252	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.77903	p.P25968H	0.992	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	103	0	0	35	15	30	-	-	-	T	179425252	G	T	179425252	3	4	440	1	0	0	0	0	1	0	0	0	16832	1232	43	4	22520	4	TTN	2	179425252	Missense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	4605581	179425252	63774121	10	42625										
RARB	0	genome.wustl.edu	37	chr3	25542800	25542800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ccagaagtgctttgaagtggGaatgtccaaagaatgtaagt	12	5	0	3			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	25542800	25542800	G	A	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	missense	c.455	p.G152E	1.000	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	162	0	0	73	35	31.82	-	-	-	A	25542800	G	A	25542800	3	1	440	1	0	0	0	0	1	0	0	0	13136	1174	41	2	444	2	RARB	3	25542800	Missense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09		25542800	172479630	11	42626										
MST1	0	genome.wustl.edu	37	chr3	49722497	49722498	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cactgctccttcactagagaINSccccccgcagaaatgctggc							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	49722497	49722498	-	C	INS	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1570_1569	p.S523fs	0.997:0.333	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	13	0	0	4	2	33.33	-	-	-	C	49722498	-	C	49722497	7	5	440	1	0	1	1	0	0	0	0	0	9962	275	10	0	627	0	MST1	3	49722497	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	24179697	49722497	148299933	12	42627										
PARP3	0	genome.wustl.edu	37	chr3	51981815	51981815	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tgttcctgggtgaggtggccCtgggcagagagcaccatatc	15	10	0	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	51981815	51981815	C	A	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	missense	c.1357	p.L453M	0.883	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	201	0	0	130	38	22.62	-	-	-	A	51981815	C	A	51981815	3	1	440	1	0	0	0	0	1	0	0	0	11535	680	24	4	1395	4	PARP3	3	51981815	Missense_Mutation	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09	2259318	51981815	146040615	13	42628										
LPHN3	0	genome.wustl.edu	37	chr4	62935938	62935938	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cgaatacctgagcaactgtgTgcaaatcatagaccgtggct	10	10	1	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	4	62935938	62935938	T	G	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.3899	p.V1300G	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	63	0	0	25	16	39.02	-	-	-	G	62935938	T	G	62935938	3	3	440	1	0	0	0	0	1	0	0	0	8983	1696	59	5	3812	5	LPHN3	4	62935938	Missense_Mutation	SNP	T	TCGA-B6-A0IN-01A-11W-A050-09		62935938	128218338	14	42629										
PRKG2	0	genome.wustl.edu	37	chr4	82074711	82074711	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tctgtccaaagtggaggaccTatgttgcaatgcaaagcata	10	8	1	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	4	82074711	82074711	T	A	SNP	PRKG2	ENST00000545647	human	ensembl	69_37n	-1	known	splice_site	c.1-2	e1-2	0.001	-	-	-	no_errors	PRKG2	HGNC	ENSG00000138669	35	0	0	25	10	28.57	-	-	-	A	82074711	T	A	82074711	5	1	440	1	0	0	0	0	0	0	1	0	12604	1537	53	5		5	PRKG2	4	82074711	Splice_Site	SNP	T	TCGA-B6-A0IN-01A-11W-A050-09	19138773	82074711	109079565	15	42630										
MAML3	0	genome.wustl.edu	37	chr4	140811111	140811111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tgctgctgctgctgctgctgCtgctgctgctgttgctgttg	14	11	0	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	4	140811111	140811111	C	T	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.1479	p.Q493	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	91	0	0	83	18	17.82	-	-	-	T	140811111	C	T	140811111	2	4	440	1	0	0	0	0	0	0	0	1	9278	796	28	4		4	MAML3	4	140811111	Silent	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09	58736400	140811111	50343165	16	42631										
ADAMTS6	0	genome.wustl.edu	37	chr5	64747993	64747993	+	Missense_Mutation	SNP	T	T	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	agaacaattaagcgggccacTataatattcacaacgtttcc							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	5	64747993	64747993	T	C	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.894	p.I298M	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	85	0	0	77	20	20.62	-	-	-	C	64747993	T	C	64747993	3	2	440	1	0	0	0	0	1	0	0	0	270	1512	53	5	2539	5	ADAMTS6	5	64747993	Missense_Mutation	SNP	T	TCGA-B6-A0IN-01A-11W-A050-09		64747993	116167267	17	42632	348	2								
ADAMTS6	0	genome.wustl.edu	37	chr5	64747994	64747994	+	Missense_Mutation	SNP	A	A	T													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gaacaattaagcgggccactAtaatattcacaacgtttcct							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	5	64747994	64747994	A	T	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.893	p.I298K	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	86	0	0	78	20	20.41	-	-	-	T	64747994	A	T	64747994	3	4	440	1	0	0	0	0	1	0	0	0	270	449	16	5	2540	5	ADAMTS6	5	64747994	Missense_Mutation	SNP	A	TCGA-B6-A0IN-01A-11W-A050-09	1	64747994	116167266	18	42633	348	2								
SNCAIP	0	genome.wustl.edu	37	chr5	121726839	121726839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	aaggaagaataatggaagccCctgaataccttgatttggat	10	6	0	3			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	5	121726839	121726839	C	T	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.10	p.P4S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	281	0	0	205	42	17	-	-	-	T	121726839	C	T	121726839	3	4	440	1	0	0	0	0	1	0	0	0	14930	623	22	4	12	4	SNCAIP	5	121726839	Missense_Mutation	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09	56978845	121726839	59188421	19	42634										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801563	140801564	+	In_Frame_Ins	INS	-	-	AGG													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gagtgttccagaaaacatcaINSgctccggaactcgggtgctg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	5	140801563	140801564	-	AGG	INS	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	in_frame_ins	c.769_770	p.S257in_frame_insKG	0.115:0.122	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	49	0	0	29	15	34.09	-	-	-	AGG	140801564	-	AGG	140801563	7	5	440	1	0	1	1	0	0	0	0	0	11625	188	7	0	771	0	PCDHGA11	5	140801563	In_Frame_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	19074724	140801563	40113697	20	42635										
SHPRH	0	genome.wustl.edu	37	chr6	146262775	146262776	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cacttttactgtgggacactINScaaccatctgagcttcatca							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	6	146262775	146262776	-	C	INS	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2474_2473	p.E825fs	1.000:1.000	pfam_SNF2_N,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	44	0	0	14	4	22.22	-	-	-	C	146262776	-	C	146262775	7	5	440	1	0	1	1	0	0	0	0	0	14380	1551	54	0	2705	0	SHPRH	6	146262775	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09		146262775	24852292	21	42636										
ZNF800	0	genome.wustl.edu	37	chr7	127026205	127026205	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ggatctccaggttccaggatAtaaactacatggaagacaaa	9	8	1	1			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	7	127026205	127026205	A	G	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	silent	c.66	p.Y22	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	160	0	0	60	31	34.07	-	-	-	G	127026205	A	G	127026205	2	3	440	1	0	0	0	0	0	0	0	1	18262	456	16	5		5	ZNF800	7	127026205	Silent	SNP	A	TCGA-B6-A0IN-01A-11W-A050-09		127026205	32112458	22	42637										
CCDC136	0	genome.wustl.edu	37	chr7	128434806	128434806	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gcagaggtgttcaccaagcaGatccagcagctccaaggtaa	11	11	1	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	7	128434806	128434806	G	A	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	silent	c.330	p.Q110	1.000	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	48	0	0	33	6	15.38	-	-	-	A	128434806	G	A	128434806	2	1	440	1	0	0	0	0	0	0	0	1	2795	933	33	2		2	CCDC136	7	128434806	Silent	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	1408601	128434806	30703857	23	42638										
SLC20A2	0	genome.wustl.edu	37	chr8	42297142	42297142	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gaggctttcgtcagatactcGtgataaagcaccttcttttt	8	9	2	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	8	42297142	42297142	G	A	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	nonsense	c.760	p.R254*	0.017	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	146	0	0	60	19	24.05	-	-	-	A	42297142	G	A	42297142	4	1	440	1	0	0	0	0	0	1	0	0	14528	1153	40	1	1218	1	SLC20A2	8	42297142	Nonsense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09		42297142	104066880	24	42639										
GATA3	0	genome.wustl.edu	37	chr10	8115960	8115961	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ctttggaccacaccacccctINSccagcatggtcaccgccatg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	10	8115960	8115961	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1309_1310	p.S438fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	72	0	0	37	23	38.33	-	-	-	C	8115961	-	C	8115960	7	5	440	1	0	1	1	0	0	0	0	0	6305	1551	54	0	1327	0	GATA3	10	8115960	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09		8115960	127418787	25	42640										
SVIL	0	genome.wustl.edu	37	chr10	29762771	29762772	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ctccccaggactcacctgggINScccccctttcctcgtccagc							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	10	29762771	29762772	-	C	INS	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5525_5524	p.A1842fs	1.000:0.998	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	41	0	0	20	3	13.04	-	-	-	C	29762772	-	C	29762771	7	5	440	1	0	1	1	0	0	0	0	0	15512	1203	42	0	1155	0	SVIL	10	29762771	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	21646811	29762771	105771976	26	42641										
KIAA0913	0	genome.wustl.edu	37	chr10	75545602	75545603	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ggcccaggccccggatccgcINSggggggggacccggccccgg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	10	75545602	75545603	-	G	INS	KIAA0913	ENST00000446546	human	ensembl	69_37n	1	known	frame_shift_ins	c.220_221	p.T77fs	1.000:1.000	NULL	pfscan_Znf_SWIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0913	HGNC	ENSG00000214655	11	0	0	4	3	42.86	-	-	-	G	75545603	-	G	75545602	7	5	440	1	0	1	1	0	0	0	0	0	8252	783	27	0		0	KIAA0913	10	75545602	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	45782831	75545602	59989145	27	42642										
DMBT1	0	genome.wustl.edu	37	chr10	124402882	124402883	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	gggtcccatccagctgcagaINScccccccacgccgagaagag							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	10	124402882	124402883	-	C	INS	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	frame_shift_ins	c.7597_7598	p.R2536fs	0.000:0.000	NULL	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	57	0	0	25	4	13.79	-	-	-	C	124402883	-	C	124402882	7	5	440	1	0	1	1	0	0	0	0	0	4613	275	10	0	7420	0	DMBT1	10	124402882	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	48857280	124402882	11131865	28	42643										
OR51A7	0	genome.wustl.edu	37	chr11	4929530	4929530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ggaagttgcttaatgtatgtGggagataagaacttgaacaa	12	3	0	3			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	11	4929530	4929530	G	T	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	1	known	missense	c.931	p.G311W	0.006	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	90	0	0	38	19	33.33	-	-	-	T	4929530	G	T	4929530	3	4	440	1	0	0	0	0	1	0	0	0	11161	1348	47	4	933	4	OR51A7	11	4929530	Missense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09		4929530	130076986	29	42644										
CORO1B	0	genome.wustl.edu	37	chr11	67207618	67207619	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cgcacttgctgacctccaggINSccccgcttgggcatgctgcc							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	11	67207618	67207619	-	C	INS	CORO1B	ENST00000341356	human	ensembl	69_37n	-1	known	frame_shift_ins	c.978_977	p.L327fs	0.996:1.000	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725	16	0	0	4	2	33.33	-	-	-	C	67207619	-	C	67207618	7	5	440	1	0	1	1	0	0	0	0	0	3784	1190	42	0	507	0	CORO1B	11	67207618	Frame_Shift_Ins	INS	-	TCGA-B6-A0IN-01A-11W-A050-09	62278088	67207618	67798898	30	42645										
ATP12A	0	genome.wustl.edu	37	chr13	25281421	25281421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	aaacctctctgcctaggtcgCctgatctttgacaacctcaa	6	14	3	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	13	25281421	25281421	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	silent	c.2361	p.R787	1.000	tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	153	0	0	51	16	23.88	-	-	-	T	25281421	C	T	25281421	2	4	440	1	0	0	0	0	0	0	0	1	1126	726	26	4		4	ATP12A	13	25281421	Silent	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09		25281421	89888457	31	42646										
GPC5	0	genome.wustl.edu	37	chr13	92345973	92345973	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ggctgcctggcgcacatggcGgagcttaatccacactggca	13	13	0	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	13	92345973	92345973	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	silent	c.858	p.A286	0.060	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	92	0	0	43	8	15.69	-	-	-	A	92345973	G	A	92345973	2	1	440	1	0	0	0	0	0	0	0	1	6651	1103	39	1		1	GPC5	13	92345973	Silent	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	67064552	92345973	22823905	32	42647										
AP1G2	0	genome.wustl.edu	37	chr14	24035346	24035346	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	agttcagggaccttccggatCatgtgcactgcagtcagaat	11	10	3	1			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	14	24035346	24035346	C	T	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.495	p.M165I	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	106	0	0	43	8	15.69	-	-	-	T	24035346	C	T	24035346	3	4	440	1	0	0	0	0	1	0	0	0	734	826	29	2	1934	2	AP1G2	14	24035346	Missense_Mutation	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09		24035346	83314194	33	42648										
BCMO1	0	genome.wustl.edu	37	chr16	81279117	81279117	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ctgcagggaaccctgctccgCaatgggcctgggatgcacac	13	14	0	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	16	81279117	81279117	C	T	SNP	BCMO1	ENST00000425577	human	ensembl	69_37n	1	known	nonsense	c.25	p.Q9*	0.852	NULL	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	104	0	0	45	28	38.36	-	-	-	T	81279117	C	T	81279117	4	4	440	1	0	0	0	0	0	1	0	0	1388	697	25	4	108	4	BCMO1	16	81279117	Nonsense_Mutation	SNP	C	TCGA-B6-A0IN-01A-11W-A050-09		81279117	9075636	34	42649										
FANCA	0	genome.wustl.edu	37	chr16	89836576	89836576	+	Frame_Shift_Del	DEL	G	G	-													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	catgaaggagagcctcacctGgtgacggagcagctggcaga							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	16	89836576	89836576	G	-	DEL	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	frame_shift_del	c.2314	p.Q772fs	1.000	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	45	0	0	14	2	12.5	-	-	-	-	89836576	G	-	89836576	7	5	440	1	0	1	0	1	0	0	0	0	5708	1357	47	0	2129	0	FANCA	16	89836576	Frame_Shift_Del	DEL	G	TCGA-B6-A0IN-01A-11W-A050-09	8557459	89836576	518177	35	42650										
ROCK1	0	genome.wustl.edu	37	chr18	18586384	18586384	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ttctaatatagcttgcagctGgtaataatctttgtctgttt	7	6	3	0			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	18	18586384	18586384	G	A	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	nonsense	c.1813	p.Q605*	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	536	0	0	269	195	41.94	-	-	-	A	18586384	G	A	18586384	4	1	440	1	0	0	0	0	0	1	0	0	13603	1357	47	4	2323	4	ROCK1	18	18586384	Nonsense_Mutation	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09		18586384	59490864	36	42651										
GIPC3	0	genome.wustl.edu	37	chr19	3590123	3590123	+	Frame_Shift_Del	DEL	T	T	-													0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	ccgtcttgggcgagttcgccTtccccgacgagtttgtggtg							TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	3590123	3590123	T	-	DEL	GIPC3	ENST00000322315	human	ensembl	69_37n	1	known	frame_shift_del	c.874	p.F292fs	1.000	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855	41	0	0	11	2	15.38	-	-	-	-	3590123	T	-	3590123	7	5	440	1	0	1	0	1	0	0	0	0	6446	1609	56	0	896	0	GIPC3	19	3590123	Frame_Shift_Del	DEL	T	TCGA-B6-A0IN-01A-11W-A050-09		3590123	55538860	37	42652										
ATP5SL	0	genome.wustl.edu	37	chr19	41939224	41939224	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	cgttcggagatgcgggggcaAccggccagcgagagctcctg	17	12	0	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	41939224	41939224	A	G	SNP	ATP5SL	ENST00000417807	human	ensembl	69_37n	-1	known	silent	c.567	p.G189	0.237	NULL	NULL	-	no_errors	ATP5SL	HGNC	ENSG00000105341	34	0	0	30	15	33.33	-	-	-	G	41939224	A	G	41939224	2	3	440	1	0	0	0	0	0	0	0	1	1168	30	2	5		5	ATP5SL	19	41939224	Silent	SNP	A	TCGA-B6-A0IN-01A-11W-A050-09	38349101	41939224	17189759	38	42653										
LRRC4B	0	genome.wustl.edu	37	chr19	51022088	51022088	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.855671264379963	1.1622641509434	NA	1.1622641509434	0.333333333333333	0.930327025915261	0	tgcaggggcgtgaagaggtcGtggggcagcgacatcaggtt	19	7	1	2			TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	51022088	51022088	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.882	p.H294	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	36	0	0	16	5	23.81	-	-	-	A	51022088	G	A	51022088	2	1	440	1	0	0	0	0	0	0	0	1	9073	1136	40	1		1	LRRC4B	19	51022088	Silent	SNP	G	TCGA-B6-A0IN-01A-11W-A050-09	9082864	51022088	8106895	39	42654										
HSPG2	0	genome.wustl.edu	37	chr1	22157965	22157965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agggggctcacctatgaagcCgctgctcagccccgccttgg	13	15	2	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	22157965	22157965	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.11443	p.G3815S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	66	0	0	53	22	29.33	-	-	-	T	22157965	C	T	22157965	3	4	441	1	0	0	0	0	1	0	0	0	7484	652	23	1	1792	1	HSPG2	1	22157965	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		22157965	227092656	1	42655										
RPS6KA1	0	genome.wustl.edu	37	chr1	26885310	26885311	+	Frame_Shift_Ins	INS	-	-	C													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cgtacagattccccaggcatINScccccccagcgctggggccc							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	26885310	26885311	-	C	INS	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	frame_shift_ins	c.1124_1125	p.S378fs	1.000:0.993	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	28	0	0	17	6	26.09	-	-	-	C	26885311	-	C	26885310	7	5	441	1	0	1	1	0	0	0	0	0	13736	1435	50	0	1290	0	RPS6KA1	1	26885310	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	4727345	26885310	222365311	2	42656										
FAM151A	0	genome.wustl.edu	37	chr1	55075435	55075435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cagcaaggccagggatggccGgagggctgcgggctccgcta	18	12	0	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	55075435	55075435	G	A	SNP	FAM151A	ENST00000302250	human	ensembl	69_37n	-1	known	missense	c.1264	p.R422W	1.000	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	60	0	0	32	4	11.11	-	-	-	A	55075435	G	A	55075435	3	1	441	1	0	0	0	0	1	0	0	0	5498	1115	39	1	497	1	FAM151A	1	55075435	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	28190125	55075435	194175186	3	42657										
ALX3	0	genome.wustl.edu	37	chr1	110603460	110603461	+	Frame_Shift_Ins	INS	-	-	C													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	aggaaggctcaaagctgtggINSccccccagggtggggggaaa							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	110603460	110603461	-	C	INS	ALX3	ENST00000369792	human	ensembl	69_37n	-1	known	frame_shift_ins	c.927_926	p.H310fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ALX3	HGNC	ENSG00000156150	31	0	0	12	2	14.29	-	-	-	C	110603461	-	C	110603460	7	5	441	1	0	1	1	0	0	0	0	0	557	1190	42	0	108	0	ALX3	1	110603460	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	55528025	110603460	138647161	4	42658										
FLG2	0	genome.wustl.edu	37	chr1	152328629	152328629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	acttgagccagaaccatgttGgccatagctagactgacgtg	11	10	0	4			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	152328629	152328629	G	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.1633	p.Q545K	0.079	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	268	1	0.37	165	27	14.06	-	-	-	T	152328629	G	T	152328629	3	4	441	1	0	0	0	0	1	0	0	0	5969	1357	47	4	5546	4	FLG2	1	152328629	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	41725169	152328629	96921992	5	42659										
RUSC1	0	genome.wustl.edu	37	chr1	155295022	155295023	+	RNA	INS	-	-	G													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ggagagtaatggagctccgcINSggggggtgcgggaatggttg							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	155295022	155295023	-	G	INS	RUSC1	ENST00000462780	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RUSC1	HGNC	ENSG00000160753	54	0	0	27	3	10	-	-	-	G	155295023	-	G	155295022	6	5	441	0	1	1	1	0	0	0	0	0	13836	783	27	0		0	RUSC1	1	155295022	RNA	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	2966393	155295022	93955599	6	42660										
HHAT	0	genome.wustl.edu	37	chr1	210847683	210847683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tcctgtactgctactcccacGtgggcattgcctgggcccag	11	15	0	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	210847683	210847683	G	T	SNP	HHAT	ENST00000545154	human	ensembl	69_37n	1	known	missense	c.1447	p.V483L	0.996	NULL	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392	79	0	0	60	17	22.08	-	-	-	T	210847683	G	T	210847683	3	4	441	1	0	0	0	0	1	0	0	0	7140	1145	40	3	1584	3	HHAT	1	210847683	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	55552661	210847683	38402938	7	42661										
ABCB10	0	genome.wustl.edu	37	chr1	229663041	229663041	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ctgacggatgtcatggccatCaagactaatagttccttgtt	9	9	2	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	1	229663041	229663041	C	G	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.1660	p.D554H	0.998	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	129	0	0	120	20	14.29	-	-	-	G	229663041	C	G	229663041	3	3	441	1	0	0	0	0	1	0	0	0	41	826	29	2	576	2	ABCB10	1	229663041	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	18815358	229663041	19587580	8	42662										
GCKR	0	genome.wustl.edu	37	chr2	27722054	27722054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	acagaagatagtgccttgcaCgggattgaggaactgaagaa	13	6	0	5			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	2	27722054	27722054	C	A	SNP	GCKR	ENST00000264717	human	ensembl	69_37n	1	known	missense	c.474	p.H158Q	0.016	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734	129	1	0.77	77	29	27.1	-	-	-	A	27722054	C	A	27722054	3	1	441	1	0	0	0	0	1	0	0	0	6344	535	19	3	496	3	GCKR	2	27722054	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		27722054	215477319	9	42663										
DHX57	0	genome.wustl.edu	37	chr2	39050359	39050359	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gtgtggaggttcaatgagccGagagaacacagactggagat	15	6	1	4			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	2	39050359	39050359	G	T	SNP	DHX57	ENST00000452978	human	ensembl	69_37n	-1	novel	nonsense	c.1037	p.S346*	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHX57	HGNC	ENSG00000163214	81	0	0	100	12	10.71	-	-	-	T	39050359	G	T	39050359	4	4	441	1	0	0	0	0	0	1	0	0	4549	1057	37	3	1125	3	DHX57	2	39050359	Nonsense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	11328305	39050359	204149014	10	42664										
RIF1	0	genome.wustl.edu	37	chr2	152285358	152285358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	aactagaagaacttggatttCgtagtggagcacccatgatt	10	7	0	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	2	152285358	152285358	C	T	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.847	p.R283C	1.000	pfam_Rif1_N,superfamily_ARM-type_fold	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	379	0	0	187	29	13.36	-	-	-	T	152285358	C	T	152285358	3	4	441	1	0	0	0	0	1	0	0	0	13443	884	31	1	877	1	RIF1	2	152285358	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	113234999	152285358	90914015	11	42665										
SP100	0	genome.wustl.edu	37	chr2	231367806	231367806	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	aaagccaacactagacctttGaaaagaagaagaaaaagagg	9	6	0	6			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	2	231367806	231367806	G	C	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	missense	c.1746	p.L582F	0.002	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	207	0	0	39	30	43.48	-	-	-	C	231367806	G	C	231367806	3	2	441	1	0	0	0	0	1	0	0	0	15049	1281	45	2	1824	2	SP100	2	231367806	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	79082448	231367806	11831567	12	42666										
RAD18	0	genome.wustl.edu	37	chr3	8932110	8932110	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ggcttcctcttcttctaaaaGatctcttatgatgtctgaac	6	10	5	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	3	8932110	8932110	G	A	SNP	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	missense	c.1348	p.L450F	0.059	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	262	0	0	104	46	30.67	-	-	-	A	8932110	G	A	8932110	3	1	441	1	0	0	0	0	1	0	0	0	13063	942	33	2	147	2	RAD18	3	8932110	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		8932110	189090320	13	42667										
AADACL2	0	genome.wustl.edu	37	chr3	151474973	151474973	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	acttccctgggcaatgagaaGaaaccaacacatgcctctgg	9	12	1	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	3	151474973	151474973	G	A	SNP	AADACL2	ENST00000356517	human	ensembl	69_37n	1	known	missense	c.797	p.R266K	0.009	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953	227	0	0	81	83	50.3	-	-	-	A	151474973	G	A	151474973	3	1	441	1	0	0	0	0	1	0	0	0	11	942	33	2	815	2	AADACL2	3	151474973	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	142542863	151474973	46547457	14	42668										
CLCN2	0	genome.wustl.edu	37	chr3	184070098	184070098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tacctcttcagggctcatctCgccttccaggtccgcgtcac	8	17	5	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	3	184070098	184070098	C	T	SNP	CLCN2	ENST00000265593	human	ensembl	69_37n	-1	known	missense	c.2293	p.E765K	0.958	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	49	0	0	21	8	26.67	-	-	-	T	184070098	C	T	184070098	3	4	441	1	0	0	0	0	1	0	0	0	3493	893	31	1	419	1	CLCN2	3	184070098	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	32595125	184070098	13952332	15	42669										
MUC4	0	genome.wustl.edu	37	chr3	195507062	195507062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tgtggatgctgaggaagtgtCggtgacaggaagaggggtgg	21	3	0	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	3	195507062	195507062	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11389	p.D3797N	0.860	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	11	0	0	21	9	30	-	-	-	T	195507062	C	T	195507062	3	4	441	1	0	0	0	0	1	0	0	0	10050	884	31	1		1	MUC4	3	195507062	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	11436964	195507062	2515368	16	42670										
MAP3K1	0	genome.wustl.edu	37	chr5	56168740	56168740	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agcagcctttggctggatcaCgaaggaatcaagagagcaat	12	8	2	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	5	56168740	56168740	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.1594	p.R532*	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	233	0	0	105	75	41.67	-	-	-	T	56168740	C	T	56168740	4	4	441	1	0	0	0	0	0	1	0	0	9314	528	19	1	1628	1	MAP3K1	5	56168740	Nonsense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		56168740	124746520	17	42671										
MAP3K1	0	genome.wustl.edu	37	chr5	56170880	56170880	+	Frame_Shift_Del	DEL	G	G	-													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tgtttggaatggaactcgttGgctgcttattttctagaaac							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	5	56170880	56170880	G	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1708	p.G570fs	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	206	0	0	124	46	26.44	-	-	-	-	56170880	G	-	56170880	7	5	441	1	0	1	0	1	0	0	0	0	9314	1348	47	0	1746	0	MAP3K1	5	56170880	Frame_Shift_Del	DEL	G	TCGA-B6-A0IO-01A-11W-A050-09	2140	56170880	124744380	18	42672										
CKMT2	0	genome.wustl.edu	37	chr5	80562003	80562003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	atggagtcaattacctggtgGattgtgaaaagaagttggag	14	3	1	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	5	80562003	80562003	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	missense	c.1186	p.D396N	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	308	0	0	138	117	45.7	-	-	-	A	80562003	G	A	80562003	3	1	441	1	0	0	0	0	1	0	0	0	3481	1174	41	2	1220	2	CKMT2	5	80562003	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	24391123	80562003	100353257	19	42673										
PCDHA9	0	genome.wustl.edu	37	chr5	140229589	140229589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cggcggttgggcgagcgctcGctgtcgagctacgtgtcagt	17	11	1	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	5	140229589	140229589	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	silent	c.1509	p.S503	0.770	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	23	0	0	5	12	70.59	-	-	-	A	140229589	G	A	140229589	2	1	441	1	0	0	0	0	0	0	0	1	11604	1074	38	1		1	PCDHA9	5	140229589	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	59667586	140229589	40685671	20	42674										
DHX16	0	genome.wustl.edu	37	chr6	30624026	30624026	+	Frame_Shift_Del	DEL	G	G	-													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tggggtccaccggcagctctGccatctttcgaccagactaa							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	6	30624026	30624026	G	-	DEL	DHX16	ENST00000376442	human	ensembl	69_37n	-1	known	frame_shift_del	c.2447	p.A816fs	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560	32	0	0	38	18	31.58	-	-	-	-	30624026	G	-	30624026	7	5	441	1	0	1	0	1	0	0	0	0	4538	1319	46	0	698	0	DHX16	6	30624026	Frame_Shift_Del	DEL	G	TCGA-B6-A0IO-01A-11W-A050-09		30624026	140491041	21	42675										
C6orf211	0	genome.wustl.edu	37	chr6	151789511	151789511	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gaaataagtgtgatctgtctCtctcaggtggagaaagtagt	12	5	3	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	6	151789511	151789511	C	A	SNP	C6orf211	ENST00000367294	human	ensembl	69_37n	1	known	missense	c.592	p.L198I	0.401	pfam_DUF89,superfamily_DUF89	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476	62	0	0	44	35	44.3	-	-	-	A	151789511	C	A	151789511	3	1	441	1	0	0	0	0	1	0	0	0	2375	913	32	2	610	2	C6orf211	6	151789511	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	121165485	151789511	19325556	22	42676										
IPCEF1	0	genome.wustl.edu	37	chr6	154521037	154521038	+	Frame_Shift_Del	DEL	TG	TG	-													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gcagcagacaaactgttaacTgtgtcaggcaaggattgtct							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	6	154521037	154521038	TG	-	DEL	IPCEF1	ENST00000367220	human	ensembl	69_37n	-1	known	frame_shift_del	c.675_674	p.T225fs	0.000:0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706	191	0	0	126	18	12.41	-	-	-	-	154521038	TG	-	154521037	7	5	441	1	0	1	0	1	0	0	0	0	7845	1567	55	0	653	0	IPCEF1	6	154521037	Frame_Shift_Del	DEL	TG	TCGA-B6-A0IO-01A-11W-A050-09	2731526	154521037	16594030	23	42677										
PLG	0	genome.wustl.edu	37	chr6	161173261	161173261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	atccaccgaactctgtgctgGgcatttggccggaggcactg	13	12	1	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	6	161173261	161173261	G	A	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.2240	p.G747E	0.004	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	143	0	0	138	22	13.66	-	-	-	A	161173261	G	A	161173261	3	1	441	1	0	0	0	0	1	0	0	0	12160	1232	43	4	2314	4	PLG	6	161173261	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	6652224	161173261	9941806	24	42678										
STK31	0	genome.wustl.edu	37	chr7	23871977	23871977	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gaaatggtgaagccaactttGattgttaaattattattgtt	8	3	0	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	7	23871977	23871977	G	C	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.3052	p.D1018H	0.045	pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	93	0	0	67	37	35.58	-	-	-	C	23871977	G	C	23871977	3	2	441	1	0	0	0	0	1	0	0	0	15387	1290	45	2	3146	2	STK31	7	23871977	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		23871977	135266686	25	42679										
ZAN	0	genome.wustl.edu	37	chr7	100365499	100365499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ctgtgtggcttgcacaaggcCgggtgaccataaggctcagc	14	11	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	7	100365499	100365499	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.4906	p.R1636W	0.683	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	65	0	0	137	23	14.29	-	-	-	T	100365499	C	T	100365499	3	4	441	1	0	0	0	0	1	0	0	0	17610	643	23	1	5004	1	ZAN	7	100365499	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	76493522	100365499	58773164	26	42680										
NEFM	0	genome.wustl.edu	37	chr8	24774763	24774763	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gaaaccaaagtggaggatgaGaagtcagaaatggaagaggc	15	4	1	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	8	24774763	24774763	G	C	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	missense	c.1395	p.E465D	0.998	NULL	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	121	0	0	58	62	51.67	-	-	-	C	24774763	G	C	24774763	3	2	441	1	0	0	0	0	1	0	0	0	10388	933	33	2	1405	2	NEFM	8	24774763	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		24774763	121589259	27	42681										
NEFM	0	genome.wustl.edu	37	chr8	24775733	24775733	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gaagtgaggaggaagggagtGataaaggtgccaagggatcc	18	4	0	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	8	24775733	24775733	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	missense	c.2365	p.D789N	0.163	NULL	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	224	0	0	89	99	52.66	-	-	-	A	24775733	G	A	24775733	3	1	441	1	0	0	0	0	1	0	0	0	10388	1290	45	2	2375	2	NEFM	8	24775733	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	970	24775733	121588289	28	42682										
WDR67	0	genome.wustl.edu	37	chr8	124162367	124162367	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gaaatggatccctcaacacaGagtaagttgataagcaagaa	9	7	1	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	8	124162367	124162367	G	A	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	silent	c.3066	p.Q1022	0.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	106	0	0	71	21	22.58	-	-	-	A	124162367	G	A	124162367	2	1	441	1	0	0	0	0	0	0	0	1	17415	956	33	2		2	WDR67	8	124162367	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	99386634	124162367	22201655	29	42683										
GATA3	0	genome.wustl.edu	37	chr10	8115955	8115955	+	Frame_Shift_Del	DEL	A	A	-													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cctgtcctttggaccacaccAcccctccagcatggtcaccg							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	10	8115955	8115955	A	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1304	p.H435fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	72	0	0	47	27	31.76	-	-	-	-	8115955	A	-	8115955	7	5	441	1	0	1	0	1	0	0	0	0	6305	159	6	0	1322	0	GATA3	10	8115955	Frame_Shift_Del	DEL	A	TCGA-B6-A0IO-01A-11W-A050-09		8115955	127418792	30	42684										
AP3M1	0	genome.wustl.edu	37	chr10	75884140	75884140	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agtcaaccttatccttacctGaaatagcaagctgctggatc	7	11	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	10	75884140	75884140	G	A	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.1154	p.S385L	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	327	2	0.61	136	169	55.41	-	-	-	A	75884140	G	A	75884140	3	1	441	1	0	0	0	0	1	0	0	0	748	1294	45	2	110	2	AP3M1	10	75884140	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	67768185	75884140	59650607	31	42685										
PTEN	0	genome.wustl.edu	37	chr10	89692794	89692794	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	acaatatccttttgaagaccAtaacccaccacagctagaac	4	13	0	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	10	89692794	89692794	A	T	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.278	p.H93L	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	271	0	0	44	69	61.06	-	-	-	T	89692794	A	T	89692794	3	4	441	1	0	0	0	0	1	0	0	0	12818	217	8	5	296	5	PTEN	10	89692794	Missense_Mutation	SNP	A	TCGA-B6-A0IO-01A-11W-A050-09	13808654	89692794	45841953	32	42686										
PAX2	0	genome.wustl.edu	37	chr10	102509528	102509529	+	Frame_Shift_Ins	INS	-	-	G													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	acgggggtgtgaaccagctcINSgggggggtgtttgtgaacgg							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	10	102509528	102509529	-	G	INS	PAX2	ENST00000370296	human	ensembl	69_37n	1	known	frame_shift_ins	c.69_70	p.V25fs	1.000:1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891	26	0	0	22	4	15.38	-	-	-	G	102509529	-	G	102509528	7	5	441	1	0	1	1	0	0	0	0	0	11552	871	31	0	75	0	PAX2	10	102509528	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	12816734	102509528	33025219	33	42687										
C10orf137	0	genome.wustl.edu	37	chr10	127429725	127429725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ttcattaccaaacaaaagaaGaccaggagatcctgcatagc	7	10	1	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	10	127429725	127429725	G	A	SNP	C10orf137	ENST00000356792	human	ensembl	69_37n	1	known	missense	c.2326	p.D776N	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938	156	0	0	108	44	28.76	-	-	-	A	127429725	G	A	127429725	3	1	441	1	0	0	0	0	1	0	0	0	1604	942	33	2	2286	2	C10orf137	10	127429725	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	24920197	127429725	8105022	34	42688										
DDB2	0	genome.wustl.edu	37	chr11	47259551	47259551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agaatcttctggcatcagttCggtgaggcttgggtcctcaa	12	9	4	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	11	47259551	47259551	C	T	SNP	DDB2	ENST00000256996	human	ensembl	69_37n	1	known	missense	c.1187	p.S396L	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574	76	0	0	48	9	15.52	-	-	-	T	47259551	C	T	47259551	3	4	441	1	0	0	0	0	1	0	0	0	4355	898	31	1	1217	1	DDB2	11	47259551	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		47259551	87746965	35	42689										
UBE4A	0	genome.wustl.edu	37	chr11	118239367	118239367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tgaactcccagctagcccagAtgactcggataatagcgtgt	10	11	0	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	11	118239367	118239367	A	G	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	missense	c.143	p.D48G	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	142	0	0	56	40	41.24	-	-	-	G	118239367	A	G	118239367	3	3	441	1	0	0	0	0	1	0	0	0	16979	333	12	5	149	5	UBE4A	11	118239367	Missense_Mutation	SNP	A	TCGA-B6-A0IO-01A-11W-A050-09	70979816	118239367	16767149	36	42690										
NFRKB	0	genome.wustl.edu	37	chr11	129762649	129762649	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ggcagactaactctggtgccTcccaggaggcaatcctccat	10	14	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	11	129762649	129762649	T	C	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	silent	c.135	p.G45	0.423	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	333	2	0.6	338	76	18.31	-	-	-	C	129762649	T	C	129762649	2	2	441	1	0	0	0	0	0	0	0	1	10456	1538	54	5		5	NFRKB	11	129762649	Silent	SNP	T	TCGA-B6-A0IO-01A-11W-A050-09	11523282	129762649	5243867	37	42691										
AMHR2	0	genome.wustl.edu	37	chr12	53819509	53819509	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gtcatgcagtggtttgggccGggcagctgcaaggaaaactg	16	8	1	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	12	53819509	53819509	G	C	SNP	AMHR2	ENST00000257863	human	ensembl	69_37n	1	known	missense	c.658	p.G220R	0.814	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	108	0	0	34	53	60.23	-	-	-	C	53819509	G	C	53819509	3	2	441	1	0	0	0	0	1	0	0	0	573	1116	39	3	680	3	AMHR2	12	53819509	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		53819509	80032386	38	42692										
TMTC2	0	genome.wustl.edu	37	chr12	83526091	83526091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ccctgcagctcaagccagacGatgtcatcacacagtccaat	7	15	3	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	12	83526091	83526091	G	C	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	missense	c.2434	p.D812H	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	89	0	0	71	19	21.11	-	-	-	C	83526091	G	C	83526091	3	2	441	1	0	0	0	0	1	0	0	0	16356	1058	37	3	2480	3	TMTC2	12	83526091	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	29706582	83526091	50325804	39	42693										
PEBP1	0	genome.wustl.edu	37	chr12	118574086	118574086	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gacgagcagccgcagcacccGctgcatgtcacctacgccgg	12	17	1	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	12	118574086	118574086	G	C	SNP	PEBP1	ENST00000261313	human	ensembl	69_37n	1	known	silent	c.72	p.P24	0.994	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	PEBP1	HGNC	ENSG00000089220	21	0	0	6	4	40	-	-	-	C	118574086	G	C	118574086	2	2	441	1	0	0	0	0	0	0	0	1	11786	1074	38	3		3	PEBP1	12	118574086	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	35047995	118574086	15277809	40	42694										
ANAPC5	0	genome.wustl.edu	37	chr12	121746366	121746366	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	catcgcacaccggttcctctCctgggtcttccccagggtat	9	16	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	12	121746366	121746366	C	A	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	nonsense	c.2185	p.E729*	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	101	0	0	59	48	44.86	-	-	-	A	121746366	C	A	121746366	4	1	441	1	0	0	0	0	0	1	0	0	605	864	30	2	86	2	ANAPC5	12	121746366	Nonsense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	3172280	121746366	12105529	41	42695										
NCOR2	0	genome.wustl.edu	37	chr12	124816874	124816874	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	aggccccttactgtattcagGctcattccggttgtgggtgt	12	10	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	12	124816874	124816874	G	C	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	missense	c.6916	p.P2306A	0.990	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	35	0	0	27	7	20.59	-	-	-	C	124816874	G	C	124816874	3	2	441	1	0	0	0	0	1	0	0	0	10308	1203	42	4	669	4	NCOR2	12	124816874	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	3070508	124816874	9035021	42	42696										
GTF2F2	0	genome.wustl.edu	37	chr13	45694817	45694817	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gagcgcggggaactcgacttGaccggcgccaaacagaacac	13	13	0	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	13	45694817	45694817	G	A	SNP	GTF2F2	ENST00000340473	human	ensembl	69_37n	1	known	silent	c.27	p.L9	1.000	pfam_TFIIF_beta,superfamily_TFIIF_interaction,pirsf_TFIIF-beta_subgr	pfam_TFIIF_beta,superfamily_TFIIF_interaction,pirsf_TFIIF-beta_subgr	-	no_errors	GTF2F2	HGNC	ENSG00000188342	70	0	0	37	26	41.27	-	-	-	A	45694817	G	A	45694817	2	1	441	1	0	0	0	0	0	0	0	1	6910	1281	45	2		2	GTF2F2	13	45694817	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		45694817	69475061	43	42697										
DOCK9	0	genome.wustl.edu	37	chr13	99460026	99460026	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gtgagtttgggttccttgtaAatatactcctttccatcttc	7	9	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	13	99460026	99460026	A	C	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.5406	p.I1802M	0.999	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	282	1	0.35	197	38	16.03	-	-	-	C	99460026	A	C	99460026	3	2	441	1	0	0	0	0	1	0	0	0	4729	10	1	5	789	5	DOCK9	13	99460026	Missense_Mutation	SNP	A	TCGA-B6-A0IO-01A-11W-A050-09	53765209	99460026	15709852	44	42698										
ISLR2	0	genome.wustl.edu	37	chr15	74426742	74426742	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tggtcccgcgtagaggaaggCgtcaacgcctactggttccg	14	12	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	15	74426742	74426742	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	silent	c.1647	p.G549	0.988	superfamily_Fibronectin_type3	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	13	0	0	8	8	50	-	-	-	T	74426742	C	T	74426742	2	4	441	1	0	0	0	0	0	0	0	1	7913	755	27	1		1	ISLR2	15	74426742	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		74426742	28104650	45	42699										
POLG	0	genome.wustl.edu	37	chr15	89870412	89870412	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ggctacctctctcctgagagCagctggcaggcatcattggc	12	13	2	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	15	89870412	89870412	C	T	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	silent	c.1419	p.L473	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	36	0	0	74	12	13.95	-	-	-	T	89870412	C	T	89870412	2	4	441	1	0	0	0	0	0	0	0	1	12274	697	25	4		4	POLG	15	89870412	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	15443670	89870412	12660980	46	42700										
COG8	0	genome.wustl.edu	37	chr16	69370510	69370510	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ttccggacacaggtgtccatGagctgaggaatctccagtat	11	10	1	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	16	69370510	69370510	G	A	SNP	COG8	ENST00000562595	human	ensembl	69_37n	-1	putative	missense	c.424	p.H142Y	0.838	pfam_Dor1	pfam_Dor1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COG8	HGNC	ENSG00000213380	118	0	0	109	24	18.05	-	-	-	A	69370510	G	A	69370510	3	1	441	1	0	0	0	0	1	0	0	0	3694	1277	45	2	1371	2	COG8	16	69370510	Missense_Mutation	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09		69370510	20984243	47	42701										
ZFHX3	0	genome.wustl.edu	37	chr16	72993144	72993144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cattcgatggtcatgcaccgCgtgggtcacaaacgaacgga	12	11	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	16	72993144	72993144	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.901	p.A301T	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	87	0	0	24	8	25	-	-	-	T	72993144	C	T	72993144	3	4	441	1	0	0	0	0	1	0	0	0	17730	768	27	1	10246	1	ZFHX3	16	72993144	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	3622634	72993144	17361609	48	42702										
PLCG2	0	genome.wustl.edu	37	chr16	81902858	81902858	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	aagaccatcttgcccctgatCaactttaaagtgagcagtgc	8	11	2	3			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	16	81902858	81902858	C	A	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	silent	c.519	p.I173	1.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	86	0	0	31	11	26.19	-	-	-	A	81902858	C	A	81902858	2	1	441	1	0	0	0	0	0	0	0	1	12110	816	29	2		2	PLCG2	16	81902858	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	8909714	81902858	8451895	49	42703										
KIF1C	0	genome.wustl.edu	37	chr17	4925966	4925966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agctgcaggccctgcgggacCgcatgctccgcatggagagg	16	13	0	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	4925966	4925966	C	T	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	missense	c.2590	p.R864C	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	84	0	0	13	23	63.89	-	-	-	T	4925966	C	T	4925966	3	4	441	1	0	0	0	0	1	0	0	0	8337	652	23	1	2668	1	KIF1C	17	4925966	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		4925966	76269244	50	42704										
SMCR8	0	genome.wustl.edu	37	chr17	18221216	18221216	+	Frame_Shift_Del	DEL	A	A	-													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cttccgataggcataaaaagAgggctggccagaacgcctta							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	18221216	18221216	A	-	DEL	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	frame_shift_del	c.2113	p.R705fs	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	50	0	0	32	21	36.84	-	-	-	-	18221216	A	-	18221216	7	5	441	1	0	1	0	1	0	0	0	0	14881	295	11	0	2115	0	SMCR8	17	18221216	Frame_Shift_Del	DEL	A	TCGA-B6-A0IO-01A-11W-A050-09	13295250	18221216	62973994	51	42705										
KCNJ12	0	genome.wustl.edu	37	chr17	21319341	21319341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	attgtggaggcccatgtgcgCgcgcagctcatcaagccgcg	14	13	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	21319341	21319341	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	silent	c.687	p.R229	0.231	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	37	0	0	20	10	33.33	-	-	-	T	21319341	C	T	21319341	2	4	441	1	0	0	0	0	0	0	0	1	8100	755	27	1		1	KCNJ12	17	21319341	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	3098125	21319341	59875869	52	42706										
COASY	0	genome.wustl.edu	37	chr17	40714751	40714752	+	Frame_Shift_Ins	INS	-	-	T													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ggctggtgaatcacacactcINStatgttcacctgcagccggg							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	40714751	40714752	-	T	INS	COASY	ENST00000590958	human	ensembl	69_37n	1	known	frame_shift_ins	c.198_199	p.Y66fs	0.915:1.000	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	22	0	0	18	3	14.29	-	-	-	T	40714752	-	T	40714751	7	5	441	1	0	1	1	0	0	0	0	0	3682	900	32	0	204	0	COASY	17	40714751	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	19395410	40714751	40480459	53	42707										
PRKAR1A	0	genome.wustl.edu	37	chr17	66521903	66521903	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cttgcactttaggtctatgtTaacaatgaatgggcaaccag	9	8	1	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	66521903	66521903	T	C	SNP	PRKAR1A	ENST00000588188	human	ensembl	69_37n	1	putative	nonstop	c.556	p.*186Q	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKAR1A	HGNC	ENSG00000108946	168	0	0	159	29	15.43	-	-	-	C	66521903	T	C	66521903	4	2	441	1	0	0	0	0	0	0	0	0	12584	1741	61	5	580	5	PRKAR1A	17	66521903	Nonstop_Mutation	SNP	T	TCGA-B6-A0IO-01A-11W-A050-09	25807152	66521903	14673307	54	42708										
SLC38A10	0	genome.wustl.edu	37	chr17	79226469	79226469	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	gtggcggtgggcctcgcccaCaggcacagcaatccctgcaa	13	15	0	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	17	79226469	79226469	C	A	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.1471	p.V491L	0.013	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	11	0	0	10	6	37.5	-	-	-	A	79226469	C	A	79226469	3	1	441	1	0	0	0	0	1	0	0	0	14691	478	17	4	2182	4	SLC38A10	17	79226469	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	12704566	79226469	1968741	55	42709										
BBC3	0	genome.wustl.edu	37	chr19	47725018	47725019	+	Frame_Shift_Ins	INS	-	-	C													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	caggaggtgggaggggcctgINSccccccgagtccctgacgtc							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	19	47725018	47725019	-	C	INS	BBC3	ENST00000449228	human	ensembl	69_37n	-1	known	frame_shift_ins	c.726_725	p.R243fs	1.000:1.000	NULL	NULL	-	no_errors	BBC3	HGNC	ENSG00000105327	23	0	0	15	2	11.76	-	-	-	C	47725019	-	C	47725018	7	5	441	1	0	1	1	0	0	0	0	0	1337	1306	46	0	63	0	BBC3	19	47725018	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09		47725018	11403965	56	42710										
LENG9	0	genome.wustl.edu	37	chr19	54973945	54973946	+	Frame_Shift_Ins	INS	-	-	C													0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ccagggcctgtgcttccttgINSccccccagcaatgtggtcct							TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	19	54973945	54973946	-	C	INS	LENG9	ENST00000333834	human	ensembl	69_37n	-1	known	frame_shift_ins	c.831_830	p.K278fs	0.000:0.000	NULL	superfamily_RNA_ligase/cNuc_Pdiesterase,smart_Znf_CCCH	-	no_errors	LENG9	HGNC	ENSG00000182909	8	0	0	8	2	20	-	-	-	C	54973946	-	C	54973945	7	5	441	1	0	1	1	0	0	0	0	0	8779	1306	46	0	678	0	LENG9	19	54973945	Frame_Shift_Ins	INS	-	TCGA-B6-A0IO-01A-11W-A050-09	7248927	54973945	4155038	57	42711										
NINL	0	genome.wustl.edu	37	chr20	25507207	25507207	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tgagctgcgagacatagtggTtctcttcttcatccatccca	8	12	3	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	20	25507207	25507207	T	G	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.17	p.N6T	0.048	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	100	1	0.99	69	31	31	-	-	-	G	25507207	T	G	25507207	3	3	441	1	0	0	0	0	1	0	0	0	10492	1725	60	5	4223	5	NINL	20	25507207	Missense_Mutation	SNP	T	TCGA-B6-A0IO-01A-11W-A050-09		25507207	37518313	58	42712										
TMPRSS6	0	genome.wustl.edu	37	chr22	37485669	37485669	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ccacgtcatacatggccagtCggtcccggcactctgccagc	10	17	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	22	37485669	37485669	C	G	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	missense	c.785	p.R262P	1.000	pirsf_Pept_S1A_matriptase-2,superfamily_CUB	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	21	0	0	14	7	33.33	-	-	-	G	37485669	C	G	37485669	3	3	441	1	0	0	0	0	1	0	0	0	16346	884	31	3	1671	3	TMPRSS6	22	37485669	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		37485669	13818897	59	42713										
CXorf38	0	genome.wustl.edu	37	chrX	40489945	40489945	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	agacagaggctgtctagcttCtgcatatcttctgtaaggcc	10	10	4	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	40489945	40489945	C	T	SNP	CXorf38	ENST00000327877	human	ensembl	69_37n	-1	known	silent	c.882	p.Q294	1.000	NULL	NULL	-	no_errors	CXorf38	HGNC	ENSG00000185753	294	0	0	160	46	22.22	-	-	-	T	40489945	C	T	40489945	2	4	441	1	0	0	0	0	0	0	0	1	4138	912	32	2		2	CXorf38	23	40489945	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09		40489945	114780615	60	42714										
RBM10	0	genome.wustl.edu	37	chrX	47044963	47044963	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	cagaagctggcctgtctgctCtgccgacgccagttccccag	11	16	2	1			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	47044963	47044963	C	T	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	silent	c.2289	p.L763	0.978	pfscan_Znf_C2H2	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	44	0	0	65	15	18.75	-	-	-	T	47044963	C	T	47044963	2	4	441	1	0	0	0	0	0	0	0	1	13194	900	32	2		2	RBM10	23	47044963	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	6555018	47044963	108225597	61	42715										
USP11	0	genome.wustl.edu	37	chrX	47092577	47092577	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tggcgccagatagaaaacggCgagagtgggcgagaacgtcc	16	9	0	4			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	47092577	47092577	C	T	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	silent	c.264	p.G88	0.234	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	27	0	0	27	6	18.18	-	-	-	T	47092577	C	T	47092577	2	4	441	1	0	0	0	0	0	0	0	1	17139	755	27	1		1	USP11	23	47092577	Silent	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	47614	47092577	108177983	62	42716										
WAS	0	genome.wustl.edu	37	chrX	48547798	48547798	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ctgatgcacgtgatgcagaaGagaagcagagccatccactc	11	11	0	5			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	48547798	48547798	G	A	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	silent	c.1428	p.K476	1.000	superfamily_WASP_C	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	159	0	0	328	73	18.2	-	-	-	A	48547798	G	A	48547798	2	1	441	1	0	0	0	0	0	0	0	1	17348	933	33	2		2	WAS	23	48547798	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	1455221	48547798	106722762	63	42717										
DACH2	0	genome.wustl.edu	37	chrX	85404051	85404051	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	ccatccagcccggggtaaacCgctgcaaactcatcaccagg	9	16	2	0			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	85404051	85404051	C	G	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	missense	c.427	p.R143G	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	189	0	0	116	87	42.86	-	-	-	G	85404051	C	G	85404051	3	3	441	1	0	0	0	0	1	0	0	0	4253	652	23	3	429	3	DACH2	23	85404051	Missense_Mutation	SNP	C	TCGA-B6-A0IO-01A-11W-A050-09	36856253	85404051	69866509	64	42718										
ZNF75D	0	genome.wustl.edu	37	chrX	134427818	134427818	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	15	0.00133037954918127	2.74893817838603	2.85889570552147	2.71102178971864	0.0366365204494528	0.291305016256625	10	tccaagatctgctcttttgaGtggatctctggcctcagcca	9	12	4	2			TCGA-B6-A0IO-01A-11W-A050-09	TCGA-B6-A0IO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	648cee86-f2e7-45a0-abf2-0ab0037e2eee	ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4	X	134427818	134427818	G	A	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	silent	c.249	p.H83	0.135	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	82	0	0	73	11	13.1	-	-	-	A	134427818	G	A	134427818	2	1	441	1	0	0	0	0	0	0	0	1	18228	1020	36	4		4	ZNF75D	23	134427818	Silent	SNP	G	TCGA-B6-A0IO-01A-11W-A050-09	49023767	134427818	20842742	65	42719										
USP34	0	genome.wustl.edu	37	chr2	61571086	61571087	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	NA	0	1	1	0	caccatcaaaatcagccataINStttttttctgattttgcact							TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	2	61571086	61571087	-	T	INS	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2364_2363	p.N788fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	90	0	0	187	41	17.98	-	-	-	T	61571087	-	T	61571086	7	5	442	1	0	1	1	0	0	0	0	0	17162	446	16	0	8536	0	USP34	2	61571086	Frame_Shift_Ins	INS	-	TCGA-B6-A0IP-01A-11D-A045-09		61571086	181628287	1	42720										
ACTR2	0	genome.wustl.edu	37	chr2	65480893	65480893	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggtgtagtggtagactctggAgatggtgtgactcacatttg	15	5	2	3			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	2	65480893	65480893	A	G	SNP	ACTR2	ENST00000377982	human	ensembl	69_37n	1	known	silent	c.495	p.G165	0.994	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR2	HGNC	ENSG00000138071	277	1	0.36	225	52	18.77	-	-	-	G	65480893	A	G	65480893	2	3	442	1	0	0	0	0	0	0	0	1	211	291	11	5		5	ACTR2	2	65480893	Silent	SNP	A	TCGA-B6-A0IP-01A-11D-A045-09	3909807	65480893	177718480	2	42721										
RETSAT	0	genome.wustl.edu	37	chr2	85571790	85571790	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caggtcttccttggtgcctcGcaggcagatgaaaacagagg	13	10	1	3			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	2	85571790	85571790	G	A	SNP	RETSAT	ENST00000295802	human	ensembl	69_37n	-1	known	nonsense	c.1183	p.R395*	0.003	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445	79	0	0	52	10	16.13	-	-	-	A	85571790	G	A	85571790	4	1	442	1	0	0	0	0	0	1	0	0	13321	1095	38	1	669	1	RETSAT	2	85571790	Nonsense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09	20090897	85571790	157627583	3	42722										
TTN	0	genome.wustl.edu	37	chr2	179436055	179436055	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caatgactctacttcctccaTcactgattggctcattccat	4	14	3	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	2	179436055	179436055	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.67100	p.D22367V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	52	0	0	119	41	25.62	-	-	-	A	179436055	T	A	179436055	3	1	442	1	0	0	0	0	1	0	0	0	16832	1435	50	5	33323	5	TTN	2	179436055	Missense_Mutation	SNP	T	TCGA-B6-A0IP-01A-11D-A045-09	93864265	179436055	63763318	4	42723										
SLC23A3	0	genome.wustl.edu	37	chr2	220034618	220034618	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccaagagtgggtggagggaTtctggggagcaggtggaggc	21	6	1	1			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	2	220034618	220034618	T	A	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.89	p.N30I	0.000	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	132	0	0	159	24	13.11	-	-	-	A	220034618	T	A	220034618	3	1	442	1	0	0	0	0	1	0	0	0	14553	1493	52	5	1815	5	SLC23A3	2	220034618	Missense_Mutation	SNP	T	TCGA-B6-A0IP-01A-11D-A045-09	40598563	220034618	23164755	5	42724										
PIK3CA	0	genome.wustl.edu	37	chr3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	attttttgatgaaacaagacGactttgtgaccttcggcttt	8	7	0	4			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	3	178916876	178916876	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.263	p.R88Q	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	90	0	0	149	21	12.35	-	-	-	A	178916876	G	A	178916876	3	1	442	1	0	0	0	0	1	0	0	0	11987	1058	37	1	265	1	PIK3CA	3	178916876	Missense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09		178916876	19105554	6	42725										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	82	0	0	143	59	29.21	-	-	-	G	178952085	A	G	178952085	3	3	442	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0IP-01A-11D-A045-09	35209	178952085	19070345	7	42726										
C4orf50	0	genome.wustl.edu	37	chr4	5982066	5982066	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcggcctctgagtcccggagCtgcggaaatcacagatttga	12	11	2	3			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	4	5982066	5982066	C	A	SNP	C4orf50	ENST00000531445	human	ensembl	69_37n	-1	known	splice_site	c.1426-1	e2-1	0.091	-	-	-	no_errors	C4orf50	HGNC	ENSG00000181215	62	0	0	16	7	30.43	-	-	-	A	5982066	C	A	5982066	5	1	442	1	0	0	0	0	0	0	1	0	2297	811	28	4	851	4	C4orf50	4	5982066	Splice_Site	SNP	C	TCGA-B6-A0IP-01A-11D-A045-09		5982066	185172210	8	42727										
TBC1D19	0	genome.wustl.edu	37	chr4	26750062	26750062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	atcatttaagtggatggttcGagctttctctggatacttag	10	6	2	0			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	4	26750062	26750062	G	A	SNP	TBC1D19	ENST00000264866	human	ensembl	69_37n	1	known	missense	c.1349	p.R450Q	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D19	HGNC	ENSG00000109680	162	0	0	178	64	26.45	-	-	-	A	26750062	G	A	26750062	3	1	442	1	0	0	0	0	1	0	0	0	15699	1058	37	1	1423	1	TBC1D19	4	26750062	Missense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09	20767996	26750062	164404214	9	42728										
N4BP2	0	genome.wustl.edu	37	chr4	40104198	40104198	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actacccggaagattctcttCtcagtagttctttaaatgta	6	9	3	1			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	4	40104198	40104198	C	A	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.733	p.L245I	0.123	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	64	0	0	62	36	36.73	-	-	-	A	40104198	C	A	40104198	3	1	442	1	0	0	0	0	1	0	0	0	10182	913	32	2	739	2	N4BP2	4	40104198	Missense_Mutation	SNP	C	TCGA-B6-A0IP-01A-11D-A045-09	13354136	40104198	151050078	10	42729										
AIM1	0	genome.wustl.edu	37	chr6	106968546	106968546	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tagaaaaggtgtttgatcccAaagtgtttacctttggtttg	10	5	0	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	6	106968546	106968546	A	T	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	nonsense	c.2239	p.K747*	0.652	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	45	0	0	73	12	14.12	-	-	-	T	106968546	A	T	106968546	4	4	442	1	0	0	0	0	0	1	0	0	430	131	5	5	2245	5	AIM1	6	106968546	Nonsense_Mutation	SNP	A	TCGA-B6-A0IP-01A-11D-A045-09		106968546	64146521	11	42730										
MLL3	0	genome.wustl.edu	37	chr7	151878506	151878506	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctagctgttcctgaagattGggaataagaatctacaacag	9	8	1	3			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	7	151878506	151878506	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.6439	p.Q2147*	0.997	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	403	0	0	239	55	18.71	-	-	-	A	151878506	G	A	151878506	4	1	442	1	0	0	0	0	0	1	0	0	9693	1357	47	4	8392	4	MLL3	7	151878506	Nonsense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09		151878506	7260157	12	42731										
FAM160B2	0	genome.wustl.edu	37	chr8	21957342	21957342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	accggcagcctgaagcccccGgggacaacccccacaccctg	10	20	0	1			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	8	21957342	21957342	G	A	SNP	FAM160B2	ENST00000289921	human	ensembl	69_37n	1	known	missense	c.1279	p.G427R	0.007	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B2	HGNC	ENSG00000158863	35	0	0	25	14	35	-	-	-	A	21957342	G	A	21957342	3	1	442	1	0	0	0	0	1	0	0	0	5511	1116	39	1	1116	1	FAM160B2	8	21957342	Missense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09		21957342	124406680	13	42732										
FCN1	0	genome.wustl.edu	37	chr9	137809681	137809681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaacaagactagcaggacagCgagcccccgggccatggtgg	15	12	0	1			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	9	137809681	137809681	C	T	SNP	FCN1	ENST00000371806	human	ensembl	69_37n	-1	known	missense	c.37	p.A13T	0.000	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN1	HGNC	ENSG00000085265	48	0	0	49	12	19.67	-	-	-	T	137809681	C	T	137809681	3	4	442	1	0	0	0	0	1	0	0	0	5837	768	27	1	979	1	FCN1	9	137809681	Missense_Mutation	SNP	C	TCGA-B6-A0IP-01A-11D-A045-09		137809681	3403750	14	42733										
TMEM132A	0	genome.wustl.edu	37	chr11	60699241	60699241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gggcgtagcggtcactcgccCcgtcacgtggcagctggagt	16	13	2	0			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	11	60699241	60699241	C	T	SNP	TMEM132A	ENST00000005286	human	ensembl	69_37n	1	known	missense	c.1100	p.P367L	0.942	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	52	0	0	81	21	20.59	-	-	-	T	60699241	C	T	60699241	3	4	442	1	0	0	0	0	1	0	0	0	16140	623	22	4	1122	4	TMEM132A	11	60699241	Missense_Mutation	SNP	C	TCGA-B6-A0IP-01A-11D-A045-09		60699241	74307275	15	42734										
FOLR3	0	genome.wustl.edu	37	chr11	71847146	71847146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	acaagacacagcccagccccGaggacgagctgtatggccag	12	14	0	1			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	11	71847146	71847146	G	A	SNP	FOLR3	ENST00000456237	human	ensembl	69_37n	1	known	missense	c.148	p.E50K	0.994	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	126	0	0	46	11	19.3	-	-	-	A	71847146	G	A	71847146	3	1	442	1	0	0	0	0	1	0	0	0	6029	1059	37	1	150	1	FOLR3	11	71847146	Missense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09	11147905	71847146	63159370	16	42735										
FICD	0	genome.wustl.edu	37	chr12	108913081	108913081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cggtccgactactaccacgtGttggaagctgccaacgaggg	13	12	0	0			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	12	108913081	108913081	G	A	SNP	FICD	ENST00000552695	human	ensembl	69_37n	1	known	silent	c.1206	p.V402	0.222	superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855	104	0	0	88	12	12	-	-	-	A	108913081	G	A	108913081	2	1	442	1	0	0	0	0	0	0	0	1	5933	1364	48	4		4	FICD	12	108913081	Silent	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09		108913081	24938814	17	42736										
SHF	0	genome.wustl.edu	37	chr15	45470457	45470457	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctcctgctgagccttcgccAgtctcctgaacatcaaacgg	9	15	2	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	15	45470457	45470457	A	G	SNP	SHF	ENST00000559566	human	ensembl	69_37n	-1	putative	missense	c.2	p.L1P	0.550	NULL	pfam_SH2,pfscan_SH2,prints_SH2	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SHF	HGNC	ENSG00000138606	89	0	0	92	33	26.4	-	-	-	G	45470457	A	G	45470457	3	3	442	1	0	0	0	0	1	0	0	0	14366	175	7	5	944	5	SHF	15	45470457	Missense_Mutation	SNP	A	TCGA-B6-A0IP-01A-11D-A045-09		45470457	57060935	18	42737										
MYO9A	0	genome.wustl.edu	37	chr15	72252308	72252308	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	catggctctgaaaaaagctcGgagaattgcccatcggaaaa	10	9	1	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	15	72252308	72252308	G	A	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	nonsense	c.2116	p.R706*	0.960	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	115	0	0	139	43	23.63	-	-	-	A	72252308	G	A	72252308	4	1	442	1	0	0	0	0	0	1	0	0	10156	1124	39	1	5646	1	MYO9A	15	72252308	Nonsense_Mutation	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09	26781851	72252308	30279084	19	42738										
CDH1	0	genome.wustl.edu	37	chr16	68844104	68844105	+	Frame_Shift_Del	DEL	TC	TC	-													0	0	1	0	NA	0	1	1	0	cacttggttctttcagctctTctctcacgctgtgtcatcca							TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	16	68844104	68844105	TC	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.692_693	p.H233fs	0.001:0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	150	0	0	55	50	46.3	-	-	-	-	68844105	TC	-	68844104	7	5	442	1	0	1	0	1	0	0	0	0	3124	1783	62	0	714	0	CDH1	16	68844104	Frame_Shift_Del	DEL	TC	TCGA-B6-A0IP-01A-11D-A045-09		68844104	21510649	20	42739										
PRAF2	0	genome.wustl.edu	37	chrX	48931491	48931491	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gcgagagcgaggccgatgccGaagcagagaaggtagttggt	18	7	0	2			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	X	48931491	48931491	G	A	SNP	PRAF2	ENST00000376390	human	ensembl	69_37n	-1	known	silent	c.156	p.F52	0.001	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	PRAF2	HGNC	ENSG00000243279	76	0	0	70	36	33.96	-	-	-	A	48931491	G	A	48931491	2	1	442	1	0	0	0	0	0	0	0	1	12499	1049	37	1		1	PRAF2	23	48931491	Silent	SNP	G	TCGA-B6-A0IP-01A-11D-A045-09		48931491	106339069	21	42740										
MAGIX	0	genome.wustl.edu	37	chrX	49021699	49021699	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	NA	0	1	1	0	gagagccccgaaaaggagttGgtgggtttcccaagggagag							TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	X	49021699	49021699	G	-	DEL	MAGIX	ENST00000412696	human	ensembl	69_37n	1	known	frame_shift_del	c.679	p.V227fs	0.009	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	37	0	0	11	2	15.38	-	-	-	-	49021699	G	-	49021699	7	5	442	1	0	1	0	1	0	0	0	0	9264	1362	47	0	737	0	MAGIX	23	49021699	Frame_Shift_Del	DEL	G	TCGA-B6-A0IP-01A-11D-A045-09	90208	49021699	106248861	22	42741										
MAGEA10	0	genome.wustl.edu	37	chrX	151303750	151303750	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgtagggtgcttggactctCctccttttggctgctggagc	13	11	1	0			TCGA-B6-A0IP-01A-11D-A045-09	TCGA-B6-A0IP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94250f1c-d514-4dd2-b488-a93fbf111784	bddb8485-8070-44ea-b360-acd8934b5a5d	X	151303750	151303750	C	A	SNP	MAGEA10	ENST00000244096	human	ensembl	69_37n	-1	known	nonsense	c.343	p.E115*	0.002	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260	123	0	0	196	75	27.68	-	-	-	A	151303750	C	A	151303750	4	1	442	1	0	0	0	0	0	1	0	0	9231	864	30	2	770	2	MAGEA10	23	151303750	Nonsense_Mutation	SNP	C	TCGA-B6-A0IP-01A-11D-A045-09	102282051	151303750	3966810	23	42742										
CATSPER4	0	genome.wustl.edu	37	chr1	26527420	26527420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tcctccaggaaccccttgcgGgaggccccctgtcgaacctc	10	18	0	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	26527420	26527420	G	A	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	missense	c.1087	p.G363R	0.003	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	127	0	0	79	15	15.96	-	-	-	A	26527420	G	A	26527420	3	1	443	1	0	0	0	0	1	0	0	0	2715	1233	43	4	1117	4	CATSPER4	1	26527420	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		26527420	222723201	1	42743										
FLG2	0	genome.wustl.edu	37	chr1	152323181	152323181	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gctgccaccagaaggcccatAcccagtgtgcccatagtcat	9	15	1	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	152323181	152323181	A	G	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.7081	p.Y2361H	0.876	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	194	0	0	301	56	15.6	-	-	-	G	152323181	A	G	152323181	3	3	443	1	0	0	0	0	1	0	0	0	5969	391	14	5	98	5	FLG2	1	152323181	Missense_Mutation	SNP	A	TCGA-B6-A0IQ-01A-11W-A050-09	125795761	152323181	96927440	2	42744										
OLFML2B	0	genome.wustl.edu	37	chr1	161953618	161953618	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tgtgtgttggtgtgggtgtcGaaagcgtaggagatgttggc	19	3	0	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	161953618	161953618	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	silent	c.2100	p.F700	0.992	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	522	0	0	184	291	61.26	-	-	-	A	161953618	G	A	161953618	2	1	443	1	0	0	0	0	0	0	0	1	10931	1049	37	1		1	OLFML2B	1	161953618	Silent	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	9630437	161953618	87297003	3	42745										
UCK2	0	genome.wustl.edu	37	chr1	165872483	165872483	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ttatctcagtacattacgttCgtcaagcctgcctttgagga	8	10	2	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	165872483	165872483	C	T	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.564	p.F188	1.000	pfam_PRK/URK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	432	1	0.23	379	63	14.25	-	-	-	T	165872483	C	T	165872483	2	4	443	1	0	0	0	0	0	0	0	1	17021	883	31	1		1	UCK2	1	165872483	Silent	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	3918865	165872483	83378138	4	42746										
SLC19A2	0	genome.wustl.edu	37	chr1	169446469	169446469	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	cccagccaggaaggtggttaGaagctggggtgtcagtaaca	15	8	1	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	169446469	169446469	G	T	SNP	SLC19A2	ENST00000236137	human	ensembl	69_37n	-1	known	missense	c.731	p.S244Y	0.004	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479	65	0	0	56	23	29.11	-	-	-	T	169446469	G	T	169446469	3	4	443	1	0	0	0	0	1	0	0	0	14518	942	33	2	782	2	SLC19A2	1	169446469	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	3573986	169446469	79804152	5	42747										
B3GALT2	0	genome.wustl.edu	37	chr1	193150454	193150454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ctgtttctttccaaatgttcCgaagggagctgtggtttgtc	11	8	1	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	193150454	193150454	C	T	SNP	B3GALT2	ENST00000367434	human	ensembl	69_37n	-1	known	missense	c.239	p.R80Q	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630	156	1	0.64	145	39	21.08	-	-	-	T	193150454	C	T	193150454	3	4	443	1	0	0	0	0	1	0	0	0	1252	652	23	1	1033	1	B3GALT2	1	193150454	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	23703985	193150454	56100167	6	42748										
MFSD4	0	genome.wustl.edu	37	chr1	205549057	205549057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tggtaaggatgtaccagaagGactcggccgtcttcctccag	12	11	1	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	1	205549057	205549057	G	A	SNP	MFSD4	ENST00000367147	human	ensembl	69_37n	1	known	missense	c.409	p.D137N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514	42	0	0	12	15	55.56	-	-	-	A	205549057	G	A	205549057	3	1	443	1	0	0	0	0	1	0	0	0	9604	1174	41	2	415	2	MFSD4	1	205549057	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	12398603	205549057	43701564	7	42749										
ZC3H15	0	genome.wustl.edu	37	chr2	187351168	187351170	+	In_Frame_Del	DEL	AGG	AGG	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	aaaggcggagcaaaaaaagaAggagaagattatcgaagtga							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	2	187351168	187351170	AGG	-	DEL	ZC3H15	ENST00000337859	human	ensembl	69_37n	1	known	in_frame_del	c.59_61	p.E21in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	75	0	0	83	10	10.75	-	-	-	-	187351170	AGG	-	187351168	7	5	443	1	0	1	0	1	0	0	0	0	17663	72	3	0	61	0	ZC3H15	2	187351168	In_Frame_Del	DEL	AGG	TCGA-B6-A0IQ-01A-11W-A050-09		187351168	55848205	8	42750										
PMS1	0	genome.wustl.edu	37	chr2	190682855	190682855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	aagatccaagatctcctcatGagctttggtatccttaaacc	6	11	2	3			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	2	190682855	190682855	G	C	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.531	p.M177I	0.988	superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	94	0	0	72	16	18.18	-	-	-	C	190682855	G	C	190682855	3	2	443	1	0	0	0	0	1	0	0	0	12216	1290	45	2	545	2	PMS1	2	190682855	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	3331687	190682855	52516518	9	42751										
VPRBP	0	genome.wustl.edu	37	chr3	51458151	51458151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ggcccactagggctttgcagGccagggcccggatttggtct	15	12	1	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	3	51458151	51458151	G	T	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.926	p.A309D	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	182	0	0	79	18	18.56	-	-	-	T	51458151	G	T	51458151	3	4	443	1	0	0	0	0	1	0	0	0	17282	1203	42	4	2294	4	VPRBP	3	51458151	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		51458151	146564279	10	42752										
DNAH1	0	genome.wustl.edu	37	chr3	52386030	52386030	+	Frame_Shift_Del	DEL	C	C	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ttgggcagatagagctggtgCagcagcagcatgtggaggat							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	3	52386030	52386030	C	-	DEL	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	frame_shift_del	c.2782	p.Q928fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	55	0	0	12	2	14.29	-	-	-	-	52386030	C	-	52386030	7	5	443	1	0	1	0	1	0	0	0	0	4633	711	25	0	2844	0	DNAH1	3	52386030	Frame_Shift_Del	DEL	C	TCGA-B6-A0IQ-01A-11W-A050-09	927879	52386030	145636400	11	42753										
NR1I2	0	genome.wustl.edu	37	chr3	119531721	119531721	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gacagtggcgggaaagagatCttctccctgctgccccacat	11	13	2	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	3	119531721	119531721	C	T	SNP	NR1I2	ENST00000337940	human	ensembl	69_37n	1	known	silent	c.825	p.I275	0.394	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852	79	0	0	23	10	30.3	-	-	-	T	119531721	C	T	119531721	2	4	443	1	0	0	0	0	0	0	0	1	10693	903	32	2		2	NR1I2	3	119531721	Silent	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	67145691	119531721	78490709	12	42754										
RNF13	0	genome.wustl.edu	37	chr3	149678699	149678699	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ctgagacctttagcttctgtCagtgcccagtcatttggggc	11	11	3	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	3	149678699	149678699	C	T	SNP	RNF13	ENST00000468289	human	ensembl	69_37n	1	novel	nonsense	c.358	p.Q120*	0.878	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF13	HGNC	ENSG00000082996	126	0	0	146	19	11.52	-	-	-	T	149678699	C	T	149678699	4	4	443	1	0	0	0	0	0	1	0	0	13523	813	29	2	988	2	RNF13	3	149678699	Nonsense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	30146978	149678699	48343731	13	42755										
LEKR1	0	genome.wustl.edu	37	chr3	156742606	156742606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tggttgaatttgaagagcaaGctcttctctttaaggaagaa	10	5	2	4			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	3	156742606	156742606	G	A	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	missense	c.1261	p.A421T	1.000	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	118	0	0	191	28	12.73	-	-	-	A	156742606	G	A	156742606	3	1	443	1	0	0	0	0	1	0	0	0	8771	971	34	4	1299	4	LEKR1	3	156742606	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	7063907	156742606	41279824	14	42756										
CTNND2	0	genome.wustl.edu	37	chr5	10981909	10981909	+	Frame_Shift_Del	DEL	G	G	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ttgtgtttgatgtcttcagcGggcgcaccataagaattcct							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	5	10981909	10981909	G	-	DEL	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	frame_shift_del	c.3393	p.A1132fs	0.985	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	370	0	0	289	132	30.99	-	-	-	-	10981909	G	-	10981909	7	5	443	1	0	1	0	1	0	0	0	0	4052	1103	39	0	292	0	CTNND2	5	10981909	Frame_Shift_Del	DEL	G	TCGA-B6-A0IQ-01A-11W-A050-09		10981909	169933351	15	42757										
TRPC7	0	genome.wustl.edu	37	chr5	135561796	135561796	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	cttagatttgcagagttttaTgaggcacatcttgattctca	8	7	2	4			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	5	135561796	135561796	T	G	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	missense	c.2188	p.I730L	1.000	prints_TRPC7_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	109	0	0	74	19	20.43	-	-	-	G	135561796	T	G	135561796	3	3	443	1	0	0	0	0	1	0	0	0	16680	1464	51	5	416	5	TRPC7	5	135561796	Missense_Mutation	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09	124579887	135561796	45353464	16	42758										
DOPEY1	0	genome.wustl.edu	37	chr6	83845441	83845441	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tacaaagacatgatattgcaCgagttttggaaccattgcta	8	7	0	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	6	83845441	83845441	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	nonsense	c.2974	p.R992*	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	98	0	0	59	51	46.36	-	-	-	T	83845441	C	T	83845441	4	4	443	1	0	0	0	0	0	1	0	0	4742	528	19	1	3044	1	DOPEY1	6	83845441	Nonsense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09		83845441	87269626	17	42759										
AIM1	0	genome.wustl.edu	37	chr6	107016426	107016426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	acacaagtgtgggaagccatGgtcctatatacctgaacaaa	9	9	0	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	6	107016426	107016426	G	A	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.5157	p.M1719I	1.000	pfscan_Ricin_B_lectin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	115	0	0	92	17	15.6	-	-	-	A	107016426	G	A	107016426	3	1	443	1	0	0	0	0	1	0	0	0	430	1348	47	4	5235	4	AIM1	6	107016426	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	23170985	107016426	64098641	18	42760										
PION	0	genome.wustl.edu	37	chr7	77006204	77006204	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tcagcataaaactggatacaTtttaagatactccttgattt	5	7	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	7	77006204	77006204	T	C	SNP	PION	ENST00000257626	human	ensembl	69_37n	-1	known	silent	c.702	p.K234	1.000	NULL	NULL	-	no_errors	PION	HGNC	ENSG00000186088	103	0	0	109	26	19.26	-	-	-	C	77006204	T	C	77006204	2	2	443	1	0	0	0	0	0	0	0	1	12008	1490	52	5		5	PION	7	77006204	Silent	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09		77006204	82132459	19	42761										
DGKI	0	genome.wustl.edu	37	chr7	137263039	137263039	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tgcatagaacattttatttcGaaaacgactgttgaatttct	6	6	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	7	137263039	137263039	G	A	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	nonsense	c.1675	p.R559*	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	48	0	0	97	15	13.39	-	-	-	A	137263039	G	A	137263039	4	1	443	1	0	0	0	0	0	1	0	0	4507	1066	37	1	1598	1	DGKI	7	137263039	Nonsense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	60256835	137263039	21875624	20	42762										
SFRP1	0	genome.wustl.edu	37	chr8	41166389	41166389	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tcttgttgagcaggggcaccCagctgctggcctgctgcttc	13	13	1	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	8	41166389	41166389	C	T	SNP	SFRP1	ENST00000220772	human	ensembl	69_37n	-1	known	nonsense	c.290	p.W97*	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332	43	0	0	19	4	17.39	-	-	-	T	41166389	C	T	41166389	4	4	443	1	0	0	0	0	0	1	0	0	14249	595	21	4	666	4	SFRP1	8	41166389	Nonsense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09		41166389	105197633	21	42763										
XKR9	0	genome.wustl.edu	37	chr8	71593433	71593433	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tagtgctttagcgttaagctTtatgctttttggaacacttg	9	6	0	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	8	71593433	71593433	T	G	SNP	XKR9	ENST00000408926	human	ensembl	69_37n	1	known	missense	c.140	p.F47C	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR9	HGNC	ENSG00000221947	241	0	0	231	87	27.36	-	-	-	G	71593433	T	G	71593433	3	3	443	1	0	0	0	0	1	0	0	0	17535	1841	64	5	142	5	XKR9	8	71593433	Missense_Mutation	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09	30427044	71593433	74770589	22	42764										
FER1L6	0	genome.wustl.edu	37	chr8	125033835	125033836	+	Frame_Shift_Del	DEL	AA	AA	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ggatcattcagcagcagaagAaaaagttatctgttgatgaa							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	8	125033835	125033836	AA	-	DEL	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	frame_shift_del	c.2059_2060	p.K688fs	1.000:1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	122	0	0	120	25	17.24	-	-	-	-	125033836	AA	-	125033835	7	5	443	1	0	1	0	1	0	0	0	0	5861	247	9	0	2121	0	FER1L6	8	125033835	Frame_Shift_Del	DEL	AA	TCGA-B6-A0IQ-01A-11W-A050-09	53440402	125033835	21330187	23	42765										
HAUS6	0	genome.wustl.edu	37	chr9	19096764	19096764	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	cggttcagcttgtcaaacatGttcctagtggttaaaaatga	9	7	2	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	9	19096764	19096764	G	C	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.132	p.N44K	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	59	0	0	60	15	20	-	-	-	C	19096764	G	C	19096764	3	2	443	1	0	0	0	0	1	0	0	0	7021	1368	48	4	2799	4	HAUS6	9	19096764	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		19096764	122116667	24	42766										
DENND4C	0	genome.wustl.edu	37	chr9	19372133	19372133	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ctccaccaagtgccagtgtcGagtggtgcaggaagtgtttt	13	9	0	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	9	19372133	19372133	G	C	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.4984	p.E1662Q	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	202	0	0	175	37	17.37	-	-	-	C	19372133	G	C	19372133	3	2	443	1	0	0	0	0	1	0	0	0	4471	1059	37	3	5094	3	DENND4C	9	19372133	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	275369	19372133	121841298	25	42767										
ZNF462	0	genome.wustl.edu	37	chr9	109685755	109685755	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	aggatgtccacacggcatttCtgcagccaactgatgttgct	10	11	1	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	9	109685755	109685755	C	G	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.91	p.L31V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	458	0	0	300	50	14.29	-	-	-	G	109685755	C	G	109685755	3	3	443	1	0	0	0	0	1	0	0	0	18022	912	32	2	93	2	ZNF462	9	109685755	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	90313622	109685755	31527676	26	42768										
PPP2R4	0	genome.wustl.edu	37	chr9	131897091	131897091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	cagggcatgaggcagccttcGctgctttcctctgctgtctc	11	14	2	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	9	131897091	131897091	G	T	SNP	PPP2R4	ENST00000452489	human	ensembl	69_37n	1	known	missense	c.583	p.A195S	1.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383	75	0	0	35	7	16.67	-	-	-	T	131897091	G	T	131897091	3	4	443	1	0	0	0	0	1	0	0	0	12468	1087	38	3	609	3	PPP2R4	9	131897091	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	22211336	131897091	9316340	27	42769										
IFITM1	0	genome.wustl.edu	37	chr11	314286	314286	+	Frame_Shift_Del	DEL	G	G	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	cgtgcccgaccatgtcgtctGgtccctgttcaacaccctct							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	314286	314286	G	-	DEL	IFITM1	ENST00000328221	human	ensembl	69_37n	1	known	frame_shift_del	c.116	p.W39fs	1.000	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM1	HGNC	ENSG00000185885	58	0	0	15	2	11.76	-	-	-	-	314286	G	-	314286	7	5	443	1	0	1	0	1	0	0	0	0	7580	1357	47	0	118	0	IFITM1	11	314286	Frame_Shift_Del	DEL	G	TCGA-B6-A0IQ-01A-11W-A050-09		314286	134692230	28	42770										
OR4A15	0	genome.wustl.edu	37	chr11	55135638	55135638	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	atgtacttttttctggcttcTttatcattcatagataccgt	5	8	4	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	55135638	55135638	T	C	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	silent	c.279	p.S93	0.001	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	122	0	0	131	27	17.09	-	-	-	C	55135638	T	C	55135638	2	2	443	1	0	0	0	0	0	0	0	1	11113	1596	56	5		5	OR4A15	11	55135638	Silent	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09	54821352	55135638	79870878	29	42771										
DDB1	0	genome.wustl.edu	37	chr11	61068352	61068352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	actctcaatcaagtcaccgtCgatgaaacctgtggctggtt	9	11	3	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	61068352	61068352	C	T	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.3268	p.D1090N	1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	330	0	0	140	43	23.5	-	-	-	T	61068352	C	T	61068352	3	4	443	1	0	0	0	0	1	0	0	0	4354	884	31	1	162	1	DDB1	11	61068352	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	5932714	61068352	73938164	30	42772										
GDPD4	0	genome.wustl.edu	37	chr11	76990360	76990360	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gcattactcaccaacagcaaTgaagagtaggcagtcaggat	10	9	2	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	76990360	76990360	T	A	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	silent	c.138	p.S46	0.417	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	254	0	0	236	132	35.87	-	-	-	A	76990360	T	A	76990360	2	1	443	1	0	0	0	0	0	0	0	1	6378	1451	51	5		5	GDPD4	11	76990360	Silent	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09	15922008	76990360	58016156	31	42773										
TRPC6	0	genome.wustl.edu	37	chr11	101344347	101344347	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	aatatgaccatgaacttgaaGatgtctttgactgttcttcc	7	8	2	5			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	101344347	101344347	G	T	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	silent	c.1902	p.I634	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	224	0	0	207	57	21.59	-	-	-	T	101344347	G	T	101344347	2	4	443	1	0	0	0	0	0	0	0	1	16679	932	33	2		2	TRPC6	11	101344347	Silent	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	24353987	101344347	33662169	32	42774										
CCDC84	0	genome.wustl.edu	37	chr11	118869807	118869807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gaagtttctggtcactccccAggattatgcgcggtgagtca	12	10	3	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	11	118869807	118869807	A	G	SNP	CCDC84	ENST00000334418	human	ensembl	69_37n	1	known	missense	c.371	p.Q124R	0.789	NULL	NULL	-	no_errors	CCDC84	HGNC	ENSG00000186166	264	1	0.38	167	35	17.33	-	-	-	G	118869807	A	G	118869807	3	3	443	1	0	0	0	0	1	0	0	0	2885	188	7	5	381	5	CCDC84	11	118869807	Missense_Mutation	SNP	A	TCGA-B6-A0IQ-01A-11W-A050-09	17525460	118869807	16136709	33	42775										
A2M	0	genome.wustl.edu	37	chr12	9256962	9256962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tgatgaatatgactttatttGgtatagggacgcctttccca	9	7	0	3			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	12	9256962	9256962	G	T	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	missense	c.1139	p.P380Q	0.957	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	234	0	0	197	49	19.84	-	-	-	T	9256962	G	T	9256962	3	4	443	1	0	0	0	0	1	0	0	0	4	1348	47	4	3389	4	A2M	12	9256962	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		9256962	124594933	34	42776										
TRIM9	0	genome.wustl.edu	37	chr14	51444032	51444032	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ggctattgatgctctgctggAgtagaagtcggggactggga	17	6	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	14	51444032	51444032	A	T	SNP	TRIM9	ENST00000298355	human	ensembl	69_37n	-1	known	missense	c.2110	p.S704T	1.000	NULL	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	226	0	0	72	8	10	-	-	-	T	51444032	A	T	51444032	3	4	443	1	0	0	0	0	1	0	0	0	16645	304	11	5	26	5	TRIM9	14	51444032	Missense_Mutation	SNP	A	TCGA-B6-A0IQ-01A-11W-A050-09		51444032	55905508	35	42777										
CDC42BPB	0	genome.wustl.edu	37	chr14	103416191	103416191	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	aagagcttgcagtcacagacGactgcatatgcgcgctgcca	11	12	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	14	103416191	103416191	G	T	SNP	CDC42BPB	ENST00000559043	human	ensembl	69_37n	-1	novel	nonsense	c.1103	p.S368*	0.890	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDC42BPB	HGNC	ENSG00000198752	13	0	0	2	4	66.67	-	-	-	T	103416191	G	T	103416191	4	4	443	1	0	0	0	0	0	1	0	0	3102	1045	37	3	1823	3	CDC42BPB	14	103416191	Nonsense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	51972159	103416191	3933349	36	42778										
CD2BP2	0	genome.wustl.edu	37	chr16	30365584	30365585	+	Frame_Shift_Del	DEL	AG	AG	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tcctcctcatcgctatccaaAgagtgtttgcctttaaagcg							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	16	30365584	30365585	AG	-	DEL	CD2BP2	ENST00000305596	human	ensembl	69_37n	-1	known	frame_shift_del	c.138_137	p.S46fs	0.998:1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217	156	0	0	137	21	13.29	-	-	-	-	30365585	AG	-	30365584	7	5	443	1	0	1	0	1	0	0	0	0	3024	59	3	0	907	0	CD2BP2	16	30365584	Frame_Shift_Del	DEL	AG	TCGA-B6-A0IQ-01A-11W-A050-09		30365584	59989169	37	42779										
MT1A	0	genome.wustl.edu	37	chr16	56673227	56673227	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	atgcaaagagtgcaaatgcaCctcctgcaagaagagtgagt	11	8	0	4			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	16	56673227	56673227	C	G	SNP	MT1A	ENST00000290705	human	ensembl	69_37n	1	known	missense	c.80	p.T27S	0.976	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1A	HGNC	ENSG00000205362	56	0	0	25	4	13.79	-	-	-	G	56673227	C	G	56673227	3	3	443	1	0	0	0	0	1	0	0	0	9969	507	18	4	86	4	MT1A	16	56673227	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	26307643	56673227	33681526	38	42780										
SLC12A4	0	genome.wustl.edu	37	chr16	67980499	67980500	+	Frame_Shift_Ins	INS	-	-	T													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	caccaccacctggcagaagcINSccttcaccttctcaatttcc							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	16	67980499	67980500	-	T	INS	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2285_2284	p.G762fs	1.000:1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	11	0	0	4	7	63.64	-	-	-	T	67980500	-	T	67980499	7	5	443	1	0	1	1	0	0	0	0	0	14474	739	26	0	1006	0	SLC12A4	16	67980499	Frame_Shift_Ins	INS	-	TCGA-B6-A0IQ-01A-11W-A050-09	11307272	67980499	22374254	39	42781										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	486	0	0	159	194	54.96	-	-	-	A	7578212	G	A	7578212	4	1	443	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		7578212	73616998	40	42782										
C17orf77	0	genome.wustl.edu	37	chr17	72588188	72588188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	taatgaatatgggcatggatGgatgaattggcgctgtcatt	13	4	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	17	72588188	72588188	G	T	SNP	C17orf77	ENST00000328023	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352	110	0	0	53	12	18.46	-	-	-	T	72588188	G	T	72588188	3	4	443	1	0	0	0	0	1	0	0	0	1898	1348	47	4	5	4	C17orf77	17	72588188	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	65009976	72588188	8607022	41	42783										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623252	74623252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gatgcaccggaggctcccagCggggaggctggccaggagca	18	12	0	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	17	74623252	74623252	C	T	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	missense	c.1069	p.A357T	0.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	33	0	0	8	23	74.19	-	-	-	T	74623252	C	T	74623252	3	4	443	1	0	0	0	0	1	0	0	0	15314	768	27	1	757	1	ST6GALNAC1	17	74623252	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	2035064	74623252	6571958	42	42784										
OR7D4	0	genome.wustl.edu	37	chr19	9324863	9324863	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gaggagacaatctgagagtaGgagaagaggatcccagctac	14	7	1	4			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	9324863	9324863	G	T	SNP	OR7D4	ENST00000308682	human	ensembl	69_37n	-1	known	silent	c.651	p.S217	0.934	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	123	0	0	80	28	25.93	-	-	-	T	9324863	G	T	9324863	2	4	443	1	0	0	0	0	0	0	0	1	11293	987	35	4		4	OR7D4	19	9324863	Silent	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		9324863	49804120	43	42785										
CD97	0	genome.wustl.edu	37	chr19	14508712	14508712	+	Frame_Shift_Del	DEL	T	T	-													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tccctacagatatgactttcTccacctggaccccgccccct							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	14508712	14508712	T	-	DEL	CD97	ENST00000242786	human	ensembl	69_37n	1	known	frame_shift_del	c.784	p.S262fs	0.011	prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	27	0	0	16	10	38.46	-	-	-	-	14508712	T	-	14508712	7	5	443	1	0	1	0	1	0	0	0	0	3078	1551	54	0	814	0	CD97	19	14508712	Frame_Shift_Del	DEL	T	TCGA-B6-A0IQ-01A-11W-A050-09	5183849	14508712	44620271	44	42786										
NOTCH3	0	genome.wustl.edu	37	chr19	15272363	15272363	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gctgcggggcccactgggttGatccagcaagcgcacgatgt	15	12	0	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	15272363	15272363	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	nonsense	c.6076	p.Q2026*	1.000	pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	47	0	0	29	65	69.15	-	-	-	A	15272363	G	A	15272363	4	1	443	1	0	0	0	0	0	1	0	0	10622	1299	45	2	893	2	NOTCH3	19	15272363	Nonsense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	763651	15272363	43856620	45	42787										
CYP2B6	0	genome.wustl.edu	37	chr19	41518287	41518287	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	agccaaaatgccatacacagAggcagtcatctatgagattc	8	10	2	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	41518287	41518287	A	G	SNP	CYP2B6	ENST00000324071	human	ensembl	69_37n	1	known	missense	c.1049	p.E350G	0.989	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408	458	1	0.22	321	98	23.39	-	-	-	G	41518287	A	G	41518287	3	3	443	1	0	0	0	0	1	0	0	0	4195	304	11	5	1075	5	CYP2B6	19	41518287	Missense_Mutation	SNP	A	TCGA-B6-A0IQ-01A-11W-A050-09	26245924	41518287	17610696	46	42788										
CEACAM6	0	genome.wustl.edu	37	chr19	42260867	42260867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ccggacagttccatgtatacCgtgagtatttccacatgacc	8	12	0	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	42260867	42260867	C	T	SNP	CEACAM6	ENST00000199764	human	ensembl	69_37n	1	known	missense	c.424	p.P142S	0.100	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM6	HGNC	ENSG00000086548	347	1	0.29	165	106	39.11	-	-	-	T	42260867	C	T	42260867	3	4	443	1	0	0	0	0	1	0	0	0	3225	666	23	1	430	1	CEACAM6	19	42260867	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	742580	42260867	16868116	47	42789										
MAMSTR	0	genome.wustl.edu	37	chr19	49218105	49218106	+	Frame_Shift_Ins	INS	-	-	G													0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tctgaagttccaacttgtgtINSggggggggcgaggggctagg							TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	49218105	49218106	-	G	INS	MAMSTR	ENST00000318083	human	ensembl	69_37n	-1	known	frame_shift_ins	c.486_485	p.H163fs	0.043:0.036	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	MAMSTR	HGNC	ENSG00000176909	61	0	0	27	4	12.9	-	-	-	G	49218106	-	G	49218105	7	5	443	1	0	1	1	0	0	0	0	0	9280	1683	59	0	781	0	MAMSTR	19	49218105	Frame_Shift_Ins	INS	-	TCGA-B6-A0IQ-01A-11W-A050-09	6957238	49218105	9910878	48	42790										
GPR32	0	genome.wustl.edu	37	chr19	51274647	51274647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tgctgctggtgctggtgagcGctttctttatcttctggtcc	12	10	3	1			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	51274647	51274647	G	A	SNP	GPR32	ENST00000270590	human	ensembl	69_37n	1	known	missense	c.790	p.A264T	0.416	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511	125	0	0	85	43	33.59	-	-	-	A	51274647	G	A	51274647	3	1	443	1	0	0	0	0	1	0	0	0	6738	1087	38	1	792	1	GPR32	19	51274647	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09	2056542	51274647	7854336	49	42791										
TMC4	0	genome.wustl.edu	37	chr19	54675769	54675769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	ctcctcctcctcctccagcgCcccccaaggcagcaccccag	6	24	0	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	19	54675769	54675769	C	T	SNP	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	missense	c.163	p.A55T	0.013	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	126	1	0.79	112	27	19.42	-	-	-	T	54675769	C	T	54675769	3	4	443	1	0	0	0	0	1	0	0	0	16082	739	26	4	2013	4	TMC4	19	54675769	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09	3401122	54675769	4453214	50	42792										
KCNQ2	0	genome.wustl.edu	37	chr20	62065225	62065225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tggagtgcaggtctgtgcgcGagaggttggtggcgtagaat	19	5	1	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	20	62065225	62065225	G	A	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.1055	p.S352L	0.833	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	51	0	0	40	5	11.11	-	-	-	A	62065225	G	A	62065225	3	1	443	1	0	0	0	0	1	0	0	0	8137	1059	37	1	1667	1	KCNQ2	20	62065225	Missense_Mutation	SNP	G	TCGA-B6-A0IQ-01A-11W-A050-09		62065225	960295	51	42793										
SMC1A	0	genome.wustl.edu	37	chrX	53423505	53423505	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	tcttgtagctgagccatggtCtcatctatgatcttcatgtg	9	9	5	2			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	X	53423505	53423505	C	A	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.2595	p.E865D	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	278	1	0.36	225	47	17.28	-	-	-	A	53423505	C	A	53423505	3	1	443	1	0	0	0	0	1	0	0	0	14870	912	32	2	1142	2	SMC1A	23	53423505	Missense_Mutation	SNP	C	TCGA-B6-A0IQ-01A-11W-A050-09		53423505	101847055	52	42794										
ODZ1	0	genome.wustl.edu	37	chrX	123779072	123779072	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0943396226415094	5	0.578279331443942	1.4336	2.8672	1.0752	1	1	0	gtgccgtggccaaagcatgtTggatcaatgcattgttcttc	11	9	2	0			TCGA-B6-A0IQ-01A-11W-A050-09	TCGA-B6-A0IQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	583964cf-84ad-4ef1-90d1-2f6bfbeb245a	3f199ef5-ce92-487f-bf42-e16e986dc62c	X	123779072	123779072	T	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.1797	p.P599	1.000	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	182	0	0	138	30	17.86	-	-	-	A	123779072	T	A	123779072	2	1	443	1	0	0	0	0	0	0	0	1	10907	1799	63	5		5	ODZ1	23	123779072	Silent	SNP	T	TCGA-B6-A0IQ-01A-11W-A050-09	70355567	123779072	31491488	53	42795										
HSPG2	0	genome.wustl.edu	37	chr1	22179535	22179535	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	acgtgtgaggaggagggctcGatgcggatgggccgggtgct	21	7	0	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	22179535	22179535	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.6468	p.I2156	1.000	pfam_Ig_I-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	12	0	0	5	8	61.54	-	-	-	T	22179535	G	T	22179535	2	4	444	1	0	0	0	0	0	0	0	1	7484	1048	37	3		3	HSPG2	1	22179535	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		22179535	227071086	1	42796										
HPDL	0	genome.wustl.edu	37	chr1	45793708	45793708	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cagccaggaaaggagaggcaGatccgagctgcagggcacga	16	10	0	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	45793708	45793708	G	C	SNP	HPDL	ENST00000334815	human	ensembl	69_37n	1	known	missense	c.888	p.Q296H	0.956	pirsf_4OHPhenylPyrv_dOase	pirsf_4OHPhenylPyrv_dOase	-	no_errors	HPDL	HGNC	ENSG00000186603	87	0	0	36	9	20	-	-	-	C	45793708	G	C	45793708	3	2	444	1	0	0	0	0	1	0	0	0	7384	933	33	2	890	2	HPDL	1	45793708	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	23614173	45793708	203456913	2	42797										
CYP4A11	0	genome.wustl.edu	37	chr1	47407052	47407052	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	agcagggaggccgcttggagGattccagagacatcacccag	14	11	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	47407052	47407052	G	T	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	silent	c.54	p.I18	0.981	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	167	0	0	160	18	10.11	-	-	-	T	47407052	G	T	47407052	2	4	444	1	0	0	0	0	0	0	0	1	4214	1164	41	2		2	CYP4A11	1	47407052	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	1613344	47407052	201843569	3	42798										
NOTCH2	0	genome.wustl.edu	37	chr1	120458455	120458455	+	Frame_Shift_Del	DEL	G	G	-													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tggggggcaagggctcccgaGgggtggttatgtgcttccct							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	120458455	120458455	G	-	DEL	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_del	c.6890	p.P2297fs	0.252	pirsf_Notch,prints_Notch_2	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	171	0	0	67	64	47.06	-	-	-	-	120458455	G	-	120458455	7	5	444	1	0	1	0	1	0	0	0	0	10620	1000	35	0	529	0	NOTCH2	1	120458455	Frame_Shift_Del	DEL	G	TCGA-B6-A0RE-01A-11W-A071-09	73051403	120458455	128792166	4	42799										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858596	149858596	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cgctcgtcccgcgctggcctCcagttcccggtagggcgagt	14	16	0	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	149858596	149858596	C	A	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	silent	c.72	p.L24	0.863	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	126	0	0	136	20	12.82	-	-	-	A	149858596	C	A	149858596	2	1	444	1	0	0	0	0	0	0	0	1	7229	842	30	2		2	HIST2H2AC	1	149858596	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	29400141	149858596	99392025	5	42800										
PGLYRP3	0	genome.wustl.edu	37	chr1	153271673	153271673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttggatgtgccatccaacccCttcatacacgccaccatcct	5	17	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	153271673	153271673	C	T	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	missense	c.763	p.G255R	1.000	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	347	0	0	308	109	26.08	-	-	-	T	153271673	C	T	153271673	3	4	444	1	0	0	0	0	1	0	0	0	11869	681	24	4	270	4	PGLYRP3	1	153271673	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	3413077	153271673	95978948	6	42801										
ADAM15	0	genome.wustl.edu	37	chr1	155029738	155029740	+	In_Frame_Del	DEL	GCT	GCT	-													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cctcctggatggaatgggcaGctgcctcttcgaacggctgc							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	155029738	155029740	GCT	-	DEL	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	in_frame_del	c.1223_1225	p.C409in_frame_del	1.000:1.000:1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	52	0	0	36	5	11.9	-	-	-	-	155029740	GCT	-	155029738	7	5	444	1	0	1	0	1	0	0	0	0	237	971	34	0	1269	0	ADAM15	1	155029738	In_Frame_Del	DEL	GCT	TCGA-B6-A0RE-01A-11W-A071-09	1758065	155029738	94220883	7	42802										
CENPF	0	genome.wustl.edu	37	chr1	214819500	214819500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	acaaatagaagagatggccaGaagcctgaaagtttttgaat	10	5	0	5			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	214819500	214819500	G	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.6587	p.R2196K	0.000	pfam_Centromere_CenpF_leu-rich_rpt	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	197	0	0	269	156	36.62	-	-	-	A	214819500	G	A	214819500	3	1	444	1	0	0	0	0	1	0	0	0	3260	942	33	2	6633	2	CENPF	1	214819500	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	59789762	214819500	34431121	8	42803										
TRIM67	0	genome.wustl.edu	37	chr1	231344720	231344720	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gttcacatttgaccccaactCtgggcatcgggacatcattt	8	12	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	1	231344720	231344720	C	G	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	missense	c.1847	p.S616C	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	150	0	0	75	37	33.04	-	-	-	G	231344720	C	G	231344720	3	3	444	1	0	0	0	0	1	0	0	0	16636	913	32	2	1877	2	TRIM67	1	231344720	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	16525220	231344720	17905901	9	42804										
APOB	0	genome.wustl.edu	37	chr2	21241873	21241873	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tgaatactcaccttctgcttGagttacaaacttcagggtat	7	9	3	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	2	21241873	21241873	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	nonsense	c.3112	p.Q1038*	0.983	pfam_Lipid_transpt_open_b-sht	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	260	0	0	144	130	47.45	-	-	-	A	21241873	G	A	21241873	4	1	444	1	0	0	0	0	0	1	0	0	787	1299	45	2	10619	2	APOB	2	21241873	Nonsense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		21241873	221957500	10	42805										
FANCD2	0	genome.wustl.edu	37	chr3	10107101	10107101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggtgtctccgctgtgcctggCtccgtatttccggttactga	12	12	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	10107101	10107101	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.2192	p.A731V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	202	0	0	101	62	38.04	-	-	-	T	10107101	C	T	10107101	3	4	444	1	0	0	0	0	1	0	0	0	5711	797	28	4	2282	4	FANCD2	3	10107101	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		10107101	187915329	11	42806										
UBA7	0	genome.wustl.edu	37	chr3	49845531	49845531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	accacaaagtccacatggaaGttgctgtcatcatcctgtaa	7	11	2	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	49845531	49845531	G	T	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.2445	p.N815K	1.000	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	28	0	0	20	4	16.67	-	-	-	T	49845531	G	T	49845531	3	4	444	1	0	0	0	0	1	0	0	0	16930	1020	36	4	613	4	UBA7	3	49845531	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	39738430	49845531	148176899	12	42807										
ALAS1	0	genome.wustl.edu	37	chr3	52239960	52239960	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gagctggcagacctccatggGaaagatgccgcactcttgtt	12	11	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	52239960	52239960	G	C	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	silent	c.906	p.G302	0.867	pfam_Aminotransferase_I/II,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	167	0	0	105	37	26.06	-	-	-	C	52239960	G	C	52239960	2	2	444	1	0	0	0	0	0	0	0	1	484	1161	41	2		2	ALAS1	3	52239960	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	2394429	52239960	145782470	13	42808										
CRYBG3	0	genome.wustl.edu	37	chr3	97598935	97598935	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tggagttctaataaaagttgTaaggggctggtaagaagttt	13	2	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	97598935	97598935	T	C	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1151	p.V384A	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	38	0	0	84	23	21.5	-	-	-	C	97598935	T	C	97598935	3	2	444	1	0	0	0	0	1	0	0	0	3943	1638	57	5	1161	5	CRYBG3	3	97598935	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	45358975	97598935	100423495	14	42809										
GABRR3	0	genome.wustl.edu	37	chr3	97731370	97731370	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctaggaaaggagagcctctcGtctttccagtaatgcctgag	11	10	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	97731370	97731370	G	C	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	missense	c.348	p.D116E	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	120	0	0	74	59	44.36	-	-	-	C	97731370	G	C	97731370	3	2	444	1	0	0	0	0	1	0	0	0	6227	1136	40	3	1078	3	GABRR3	3	97731370	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	132435	97731370	100291060	15	42810										
ALDH1L1	0	genome.wustl.edu	37	chr3	125877412	125877412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tattttgccaccacatcaggCaaagcctgtccttttgcacg	7	13	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	125877412	125877412	C	G	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	missense	c.198	p.L66F	0.998	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	89	0	0	28	11	28.21	-	-	-	G	125877412	C	G	125877412	3	3	444	1	0	0	0	0	1	0	0	0	494	709	25	4	2594	4	ALDH1L1	3	125877412	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	28146042	125877412	72145018	16	42811										
IFT122	0	genome.wustl.edu	37	chr3	129225321	129225321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gctcacaaacaatgccgtggCggagagcaggtttaatgatg	13	8	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	129225321	129225321	C	G	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	missense	c.2873	p.A958G	0.956	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	136	0	0	77	17	18.09	-	-	-	G	129225321	C	G	129225321	3	3	444	1	0	0	0	0	1	0	0	0	7609	768	27	3	2963	3	IFT122	3	129225321	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	3347909	129225321	68797109	17	42812										
SLCO2A1	0	genome.wustl.edu	37	chr3	133661572	133661572	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggcacgatcctgtctttgctGaagcggatcccccggtcaca	11	14	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	133661572	133661572	G	T	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	nonsense	c.1502	p.S501*	0.295	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	64	0	0	24	28	53.85	-	-	-	T	133661572	G	T	133661572	4	4	444	1	0	0	0	0	0	1	0	0	14815	1294	45	2	445	2	SLCO2A1	3	133661572	Nonsense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	4436251	133661572	64360858	18	42813										
SLCO2A1	0	genome.wustl.edu	37	chr3	133667494	133667494	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggtgcactgggccaggaccaCcaggacgaagagtgagttca	15	10	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	133667494	133667494	C	G	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.991	p.V331L	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	169	0	0	82	10	10.87	-	-	-	G	133667494	C	G	133667494	3	3	444	1	0	0	0	0	1	0	0	0	14815	507	18	4	968	4	SLCO2A1	3	133667494	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	5922	133667494	64354936	19	42814										
RAP2B	0	genome.wustl.edu	37	chr3	152880727	152880727	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ccagggcttcatcctggtctAcagcctcgtcaaccagcaga	9	15	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	152880727	152880727	A	G	SNP	RAP2B	ENST00000323534	human	ensembl	69_37n	1	known	missense	c.245	p.Y82C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2B	HGNC	ENSG00000181467	27	0	0	22	6	21.43	-	-	-	G	152880727	A	G	152880727	3	3	444	1	0	0	0	0	1	0	0	0	13124	391	14	5	247	5	RAP2B	3	152880727	Missense_Mutation	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	19213233	152880727	45141703	20	42815										
VPS8	0	genome.wustl.edu	37	chr3	184577834	184577834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aaagcatcttcacctatactAtgacctcatcaactttaccg	3	13	4	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	3	184577834	184577834	A	G	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	1	known	missense	c.1205	p.Y402C	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	66	0	0	59	34	36.56	-	-	-	G	184577834	A	G	184577834	3	3	444	1	0	0	0	0	1	0	0	0	17315	449	16	5	1255	5	VPS8	3	184577834	Missense_Mutation	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	31697107	184577834	13444596	21	42816										
MRPS30	0	genome.wustl.edu	37	chr5	44809572	44809573	+	Frame_Shift_Ins	INS	-	-	A													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gcaccgttacgaggagagcgINSaggtcatatctttgcccttc							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	5	44809572	44809573	-	A	INS	MRPS30	ENST00000507110	human	ensembl	69_37n	1	known	frame_shift_ins	c.508_509	p.V171fs	0.031:0.041	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996	10	0	0	16	15	48.39	-	-	-	A	44809573	-	A	44809572	7	5	444	1	0	1	1	0	0	0	0	0	9912	1059	37	0	510	0	MRPS30	5	44809572	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09		44809572	136105688	22	42817										
PLK2	0	genome.wustl.edu	37	chr5	57750425	57750425	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gtctttcagttacatctttgTaagagcatgttcagggcata	9	7	4	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	5	57750425	57750425	T	A	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	missense	c.2043	p.L681F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	101	0	0	54	24	30.77	-	-	-	A	57750425	T	A	57750425	3	1	444	1	0	0	0	0	1	0	0	0	12170	1635	57	5	18	5	PLK2	5	57750425	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	12940853	57750425	123164835	23	42818										
LARS	0	genome.wustl.edu	37	chr5	145539015	145539015	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atgcaaggctgtccatctttCggagagtaaattgtatacct	9	8	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	5	145539015	145539015	C	T	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	silent	c.726	p.P242	0.975	pfam_aa-tRNA-synth_Ia,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	77	0	0	68	14	17.07	-	-	-	T	145539015	C	T	145539015	2	4	444	1	0	0	0	0	0	0	0	1	8688	871	31	1		1	LARS	5	145539015	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	87788590	145539015	35376245	24	42819										
STK10	0	genome.wustl.edu	37	chr5	171520913	171520913	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctcgagaggcttgtcagcatTgaggcttggcggactcacct	13	11	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	5	171520913	171520913	T	A	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	missense	c.1057	p.N353Y	0.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	68	0	0	31	9	22.5	-	-	-	A	171520913	T	A	171520913	3	1	444	1	0	0	0	0	1	0	0	0	15377	1812	63	5	1893	5	STK10	5	171520913	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	25981898	171520913	9394347	25	42820										
CCHCR1	0	genome.wustl.edu	37	chr6	31117874	31117874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gctgcttaacagagtcactgTgttccagctcctgggccttt	10	12	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	31117874	31117874	T	C	SNP	CCHCR1	ENST00000396268	human	ensembl	69_37n	-1	known	missense	c.1331	p.H444R	0.590	pfam_HCR	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536	122	0	0	54	9	14.29	-	-	-	C	31117874	T	C	31117874	3	2	444	1	0	0	0	0	1	0	0	0	2904	1696	59	5	1328	5	CCHCR1	6	31117874	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09		31117874	139997193	26	42821										
IP6K3	0	genome.wustl.edu	37	chr6	33693353	33693353	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttcagatccaggacacagggAtgcgtgtactgtgacactac	11	10	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	33693353	33693353	A	T	SNP	IP6K3	ENST00000293756	human	ensembl	69_37n	-1	known	missense	c.630	p.H210Q	0.000	pfam_IPK	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896	96	0	0	59	21	26.25	-	-	-	T	33693353	A	T	33693353	3	4	444	1	0	0	0	0	1	0	0	0	7844	330	12	5	610	5	IP6K3	6	33693353	Missense_Mutation	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	2575479	33693353	137421714	27	42822										
RSPH9	0	genome.wustl.edu	37	chr6	43624412	43624412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tgcttgagaaggctgacctgGacccctccctggatttcatg	11	12	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	43624412	43624412	G	A	SNP	RSPH9	ENST00000372165	human	ensembl	69_37n	1	known	missense	c.577	p.D193N	1.000	NULL	NULL	-	no_errors	RSPH9	HGNC	ENSG00000172426	518	0	0	197	132	40.12	-	-	-	A	43624412	G	A	43624412	3	1	444	1	0	0	0	0	1	0	0	0	13794	1174	41	2	636	2	RSPH9	6	43624412	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	9931059	43624412	127490655	28	42823										
LAMA4	0	genome.wustl.edu	37	chr6	112437070	112437070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atttttcagacactacctgtCcatttttcatgtgaacattt	4	9	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	112437070	112437070	C	A	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.5108	p.G1703V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	285	0	0	467	56	10.69	-	-	-	A	112437070	C	A	112437070	3	1	444	1	0	0	0	0	1	0	0	0	8662	855	30	2	379	2	LAMA4	6	112437070	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	68812658	112437070	58677997	29	42824										
MYB	0	genome.wustl.edu	37	chr6	135520054	135520054	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctccatatttagttcttaaaCacttccagtaaccatgaaaa	3	10	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	135520054	135520054	C	G	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	missense	c.1575	p.N525K	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	61	0	0	60	12	16.67	-	-	-	G	135520054	C	G	135520054	3	3	444	1	0	0	0	0	1	0	0	0	10079	477	17	4	1617	4	MYB	6	135520054	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	23082984	135520054	35595013	30	42825										
UTRN	0	genome.wustl.edu	37	chr6	144837401	144837401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aaccattataccaatgtttgGtcaccactgaaacatttgaa	5	9	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	6	144837401	144837401	G	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.5281	p.V1761F	0.097	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	66	0	0	104	32	23.53	-	-	-	T	144837401	G	T	144837401	3	4	444	1	0	0	0	0	1	0	0	0	17200	1261	44	4	5427	4	UTRN	6	144837401	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	9317347	144837401	26277666	31	42826										
HECW1	0	genome.wustl.edu	37	chr7	43548589	43548589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctggactacagtggcccctcGcgggagttcttcttccttct	10	14	3	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	43548589	43548589	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.3888	p.S1296	0.585	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	180	0	0	203	32	13.56	-	-	-	A	43548589	G	A	43548589	2	1	444	1	0	0	0	0	0	0	0	1	7093	1074	38	1		1	HECW1	7	43548589	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		43548589	115590074	32	42827										
ABCA13	0	genome.wustl.edu	37	chr7	48285575	48285575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gggactgttgtgctattgtaActcctctgagacgagtgttt	12	7	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	48285575	48285575	A	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.1607	p.N536S	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	39	0	0	48	12	20	-	-	-	G	48285575	A	G	48285575	3	3	444	1	0	0	0	0	1	0	0	0	31	43	2	5	1486	5	ABCA13	7	48285575	Missense_Mutation	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	4736986	48285575	110853088	33	42828										
STEAP4	0	genome.wustl.edu	37	chr7	87910332	87910332	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aacccaagtattcccaaagcCacatatgaatcactgagcca	5	13	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	87910332	87910332	C	G	SNP	STEAP4	ENST00000380079	human	ensembl	69_37n	-1	known	silent	c.1047	p.V349	0.002	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP4	HGNC	ENSG00000127954	66	0	0	153	35	18.62	-	-	-	G	87910332	C	G	87910332	2	3	444	1	0	0	0	0	0	0	0	1	15371	581	21	4		4	STEAP4	7	87910332	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	39624757	87910332	71228331	34	42829										
TRRAP	0	genome.wustl.edu	37	chr7	98528369	98528369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tctattaagtttctcatggaGcggctgcctctcacttgggt	10	10	3	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	98528369	98528369	G	A	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.2651	p.S884N	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	200	0	0	67	80	54.05	-	-	-	A	98528369	G	A	98528369	3	1	444	1	0	0	0	0	1	0	0	0	16697	962	34	4	3601	4	TRRAP	7	98528369	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	10618037	98528369	60610294	35	42830										
SLC13A1	0	genome.wustl.edu	37	chr7	122759197	122759197	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	attgctggctacctcagttaAagatgtcaccatcaaagaag	8	9	3	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	122759197	122759197	A	T	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.1450	p.L484I	0.999	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	47	0	0	129	27	17.31	-	-	-	T	122759197	A	T	122759197	3	4	444	1	0	0	0	0	1	0	0	0	14480	11	1	5	349	5	SLC13A1	7	122759197	Missense_Mutation	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	24230828	122759197	36379466	36	42831										
ASB15	0	genome.wustl.edu	37	chr7	123256326	123256326	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cttgtggaggccataaaacaAggtaaatgggtgtactatct	11	6	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	123256326	123256326	A	G	SNP	ASB15	ENST00000275699	human	ensembl	69_37n	1	known	silent	c.159	p.Q53	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809	54	0	0	68	78	53.42	-	-	-	G	123256326	A	G	123256326	2	3	444	1	0	0	0	0	0	0	0	1	1023	86	3	5		5	ASB15	7	123256326	Silent	SNP	A	TCGA-B6-A0RE-01A-11W-A071-09	497129	123256326	35882337	37	42832										
ZC3HC1	0	genome.wustl.edu	37	chr7	129663533	129663533	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	agagtcccagctccgagttcGagagacaatgggaccagggc	14	11	0	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	129663533	129663533	G	A	SNP	ZC3HC1	ENST00000358303	human	ensembl	69_37n	-1	known	nonsense	c.1051	p.R351*	0.951	NULL	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	76	0	0	70	41	36.94	-	-	-	A	129663533	G	A	129663533	4	1	444	1	0	0	0	0	0	1	0	0	17673	1066	37	1	469	1	ZC3HC1	7	129663533	Nonsense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	6407207	129663533	29475130	38	42833										
TRPV6	0	genome.wustl.edu	37	chr7	142573589	142573589	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tcgatctctgtgaggtcataGagagtcgaggtcagtggtcc	14	8	3	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	142573589	142573589	G	C	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	silent	c.831	p.L277	0.901	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	198	0	0	114	36	24	-	-	-	C	142573589	G	C	142573589	2	2	444	1	0	0	0	0	0	0	0	1	16696	929	33	2		2	TRPV6	7	142573589	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	12910056	142573589	16565074	39	42834										
ABCF2	0	genome.wustl.edu	37	chr7	150913108	150913108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttcggatcatgccatctgtgGgtagtagctaggaagaaaaa	12	6	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	7	150913108	150913108	G	T	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	missense	c.1346	p.P449H	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	132	0	0	74	21	22.11	-	-	-	T	150913108	G	T	150913108	3	4	444	1	0	0	0	0	1	0	0	0	66	1232	43	4	582	4	ABCF2	7	150913108	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	8339519	150913108	8225555	40	42835										
BLK	0	genome.wustl.edu	37	chr8	11400751	11400752	+	Frame_Shift_Ins	INS	-	-	A													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggatggggctggtaagtagcINSaaaaagccggacaaggaaaa							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	11400751	11400752	-	A	INS	BLK	ENST00000259089	human	ensembl	69_37n	1	known	frame_shift_ins	c.18_19	p.P8fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	48	0	0	42	11	20.75	-	-	-	A	11400752	-	A	11400751	7	5	444	1	0	1	1	0	0	0	0	0	1449	709	25	0	20	0	BLK	8	11400751	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09		11400751	134963271	41	42836										
FZD3	0	genome.wustl.edu	37	chr8	28413307	28413307	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aacctgattttgctcagtctCtcctgagggatccaaatact	7	11	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	28413307	28413307	C	A	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	1	known	missense	c.1606	p.L536I	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	102	0	0	117	15	11.36	-	-	-	A	28413307	C	A	28413307	3	1	444	1	0	0	0	0	1	0	0	0	6180	913	32	2	1624	2	FZD3	8	28413307	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	17012556	28413307	117950715	42	42837										
EXTL3	0	genome.wustl.edu	37	chr8	28574385	28574386	+	Frame_Shift_Ins	INS	-	-	C													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ccacactggcggacggatggINSacacaaccatgtcatcatca							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	28574385	28574386	-	C	INS	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	frame_shift_ins	c.809_810	p.H271fs	1.000:0.986	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	92	0	0	138	134	49.26	-	-	-	C	28574386	-	C	28574385	7	5	444	1	0	1	1	0	0	0	0	0	5364	1174	41	0	811	0	EXTL3	8	28574385	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09	161078	28574385	117789637	43	42838										
MCM4	0	genome.wustl.edu	37	chr8	48887464	48887464	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cgcctccatcgggaagctctGaagcagtctgcaactgatcc	10	14	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	48887464	48887464	G	A	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	silent	c.2307	p.L769	0.262	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	201	0	0	163	36	18.09	-	-	-	A	48887464	G	A	48887464	2	1	444	1	0	0	0	0	0	0	0	1	9460	1277	45	2		2	MCM4	8	48887464	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	20313079	48887464	97476558	44	42839										
RP1	0	genome.wustl.edu	37	chr8	55537315	55537315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aataatgattgctacttagaCtattcttttgttcctgaaaa	5	6	1	3			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	55537315	55537315	C	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.873	p.D291E	0.051	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	71	0	0	69	20	22.47	-	-	-	A	55537315	C	A	55537315	3	1	444	1	0	0	0	0	1	0	0	0	13618	564	20	4	883	4	RP1	8	55537315	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	6649851	55537315	90826707	45	42840										
LAPTM4B	0	genome.wustl.edu	37	chr8	98817648	98817648	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tccggatcagtataacttttCaagttctgaactgggaggtg	11	7	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	98817648	98817648	C	G	SNP	LAPTM4B	ENST00000445593	human	ensembl	69_37n	1	known	nonsense	c.440	p.S147*	0.996	NULL	pfam_LAPTM4/5	-	no_errors	LAPTM4B	HGNC	ENSG00000104341	175	0	0	128	37	22.42	-	-	-	G	98817648	C	G	98817648	4	3	444	1	0	0	0	0	0	1	0	0	8679	838	29	2	446	2	LAPTM4B	8	98817648	Nonsense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	43280333	98817648	47546374	46	42841										
BAI1	0	genome.wustl.edu	37	chr8	143569787	143569787	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tcagcttccccatgaagggcTggcgggccacgggtgactgg	16	12	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	8	143569787	143569787	T	G	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.2371	p.W791G	1.000	pfam_DUF3497,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	14	0	0	15	14	48.28	-	-	-	G	143569787	T	G	143569787	3	3	444	1	0	0	0	0	1	0	0	0	1302	1580	55	5	2421	5	BAI1	8	143569787	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	44752139	143569787	2794235	47	42842										
HEMGN	0	genome.wustl.edu	37	chr9	100689708	100689708	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	acatcattttctggatgactCtcattcagaattgctggtat	7	8	4	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	9	100689708	100689708	C	G	SNP	HEMGN	ENST00000259456	human	ensembl	69_37n	-1	known	missense	c.1413	p.E471D	0.039	NULL	NULL	-	no_errors	HEMGN	HGNC	ENSG00000136929	46	0	0	25	53	67.95	-	-	-	G	100689708	C	G	100689708	3	3	444	1	0	0	0	0	1	0	0	0	7101	912	32	2	45	2	HEMGN	9	100689708	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		100689708	40523723	48	42843										
ZFP37	0	genome.wustl.edu	37	chr9	115818872	115818872	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gggctcggacacagccatctCcagtggtcgcccggcctctt	12	16	2	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	9	115818872	115818872	C	G	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.97	p.E33Q	0.716	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	200	0	0	91	11	10.78	-	-	-	G	115818872	C	G	115818872	3	3	444	1	0	0	0	0	1	0	0	0	17744	864	30	2	1811	2	ZFP37	9	115818872	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	15129164	115818872	25394559	49	42844										
CYP26A1	0	genome.wustl.edu	37	chr10	94834968	94834968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aacattcgcgccaagatctgCgggctgcgggcatccgaggc	14	13	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	10	94834968	94834968	C	T	SNP	CYP26A1	ENST00000224356	human	ensembl	69_37n	1	known	silent	c.768	p.C256	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596	15	0	0	5	23	82.14	-	-	-	T	94834968	C	T	94834968	2	4	444	1	0	0	0	0	0	0	0	1	4186	776	27	1		1	CYP26A1	10	94834968	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		94834968	40699779	50	42845										
WNT8B	0	genome.wustl.edu	37	chr10	102239712	102239712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	agtatcagtttgcctgggacCgctggaactgccctgagaga	13	10	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	10	102239712	102239712	C	T	SNP	WNT8B	ENST00000343737	human	ensembl	69_37n	1	known	missense	c.184	p.R62C	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8B	HGNC	ENSG00000075290	190	0	0	70	24	25.53	-	-	-	T	102239712	C	T	102239712	3	4	444	1	0	0	0	0	1	0	0	0	17494	652	23	1	194	1	WNT8B	10	102239712	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	7404744	102239712	33295035	51	42846										
EIF4G2	0	genome.wustl.edu	37	chr11	10827548	10827548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tcgtctagtgcttcgtgcagGaatccatttctgagcgtttt	10	9	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	11	10827548	10827548	G	A	SNP	EIF4G2	ENST00000339995	human	ensembl	69_37n	-1	known	missense	c.154	p.P52S	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_W2_domain,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_start_codon	EIF4G2	HGNC	ENSG00000110321	150	0	0	77	9	10.47	-	-	-	A	10827548	G	A	10827548	3	1	444	1	0	0	0	0	1	0	0	0	5074	1174	41	2	2645	2	EIF4G2	11	10827548	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		10827548	124178968	52	42847										
ACCS	0	genome.wustl.edu	37	chr11	44104793	44104793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	acacctatgtctcagaagagCttagggcattggggatcccc	11	11	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	11	44104793	44104793	C	T	SNP	ACCS	ENST00000263776	human	ensembl	69_37n	1	known	missense	c.1186	p.L396F	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCS	HGNC	ENSG00000110455	178	0	0	190	75	28.2	-	-	-	T	44104793	C	T	44104793	3	4	444	1	0	0	0	0	1	0	0	0	133	797	28	4	1232	4	ACCS	11	44104793	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	33277245	44104793	90901723	53	42848										
OR10V1	0	genome.wustl.edu	37	chr11	59481034	59481034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atctgggtgccacatcccgtGatggaaacaggagttttgcc	12	10	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	11	59481034	59481034	G	C	SNP	OR10V1	ENST00000307552	human	ensembl	69_37n	-1	known	missense	c.285	p.I95M	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10V1	HGNC	ENSG00000172289	141	0	0	157	47	23.04	-	-	-	C	59481034	G	C	59481034	3	2	444	1	0	0	0	0	1	0	0	0	10993	1280	45	2	648	2	OR10V1	11	59481034	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	15376241	59481034	75525482	54	42849										
CBL	0	genome.wustl.edu	37	chr11	119142562	119142562	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	attactaaagcagatgctgcGgaattttggagaaaagcttt	10	5	0	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	11	119142562	119142562	G	A	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	silent	c.561	p.A187	0.516	pfam_Adaptor_Cbl_EF_hand-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	165	1	0.6	211	60	22.14	-	-	-	A	119142562	G	A	119142562	2	1	444	1	0	0	0	0	0	0	0	1	2725	1103	39	1		1	CBL	11	119142562	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	59661528	119142562	15863954	55	42850										
KCNA5	0	genome.wustl.edu	37	chr12	5154568	5154568	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	agctctcccgccactccaagGggctgcagatcctgggcaag	12	15	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	12	5154568	5154568	G	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.1255	p.G419W	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	74	0	0	70	40	36.36	-	-	-	T	5154568	G	T	5154568	3	4	444	1	0	0	0	0	1	0	0	0	8060	1232	43	4	1257	4	KCNA5	12	5154568	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		5154568	128697327	56	42851										
SLC2A3	0	genome.wustl.edu	37	chr12	8077007	8077007	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tcacccaaagagcacctaccTttaataacaaagaaacagtc	4	12	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	12	8077007	8077007	T	C	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	missense	c.1067	p.K356R	0.994	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	245	0	0	282	59	17.3	-	-	-	C	8077007	T	C	8077007	3	2	444	1	0	0	0	0	1	0	0	0	14634	1623	56	5	435	5	SLC2A3	12	8077007	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	2922439	8077007	125774888	57	42852										
LRP1	0	genome.wustl.edu	37	chr12	57592310	57592310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ccgcatcggcatggatgggtCcagccgcagcgtcatcgtgg	15	13	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	12	57592310	57592310	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.9533	p.S3178F	0.996	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	12	0	0	1	6	85.71	-	-	-	T	57592310	C	T	57592310	3	4	444	1	0	0	0	0	1	0	0	0	9017	855	30	2	9771	2	LRP1	12	57592310	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	49515303	57592310	76259585	58	42853										
MMP17	0	genome.wustl.edu	37	chr12	132325312	132325313	+	Frame_Shift_Ins	INS	-	-	T													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttcgacggccccggcggcacINScgtggcccacgccttcttcc							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	12	132325312	132325313	-	T	INS	MMP17	ENST00000360564	human	ensembl	69_37n	1	known	frame_shift_ins	c.617_618	p.V207fs	0.994:0.372	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP17	HGNC	ENSG00000198598	10	0	0	5	30	85.71	-	-	-	T	132325313	-	T	132325312	7	5	444	1	0	1	1	0	0	0	0	0	9727	507	18	0	631	0	MMP17	12	132325312	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09	74733002	132325312	1526583	59	42854										
LCP1	0	genome.wustl.edu	37	chr13	46701779	46701779	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggcaaacacggtcatgaccaTtttggggttcacttcaacca	9	11	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	13	46701779	46701779	T	A	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	missense	c.1831	p.M611L	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	289	0	0	175	29	14.22	-	-	-	A	46701779	T	A	46701779	3	1	444	1	0	0	0	0	1	0	0	0	8745	1493	52	5	56	5	LCP1	13	46701779	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09		46701779	68468099	60	42855										
ERCC5	0	genome.wustl.edu	37	chr13	103506681	103506681	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cccaagttcgaagagaaaacGacctctatgttttgcctcct	7	12	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	13	103506681	103506681	G	C	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	missense	c.424	p.D142H	1.000	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	119	0	0	213	69	24.38	-	-	-	C	103506681	G	C	103506681	3	2	444	1	0	0	0	0	1	0	0	0	5253	1058	37	3	438	3	ERCC5	13	103506681	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	56804902	103506681	11663197	61	42856										
GAS6	0	genome.wustl.edu	37	chr13	114542717	114542718	+	Frame_Shift_Ins	INS	-	-	C													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tacctttgtcgcagagccggINScccccccagccagctttaca							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	13	114542717	114542718	-	C	INS	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	frame_shift_ins	c.450_449	p.R151fs	0.842:0.997	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	12	0	0	20	5	20	-	-	-	C	114542718	-	C	114542717	7	5	444	1	0	1	1	0	0	0	0	0	6299	1190	42	0	1630	0	GAS6	13	114542717	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09	11036036	114542717	627161	62	42857										
BAZ1A	0	genome.wustl.edu	37	chr14	35245596	35245596	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttggattttttctaagagctCtttctcttttcgttggtgtt	8	6	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	14	35245596	35245596	C	T	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.2362	p.E788K	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	158	0	0	68	81	54.36	-	-	-	T	35245596	C	T	35245596	3	4	444	1	0	0	0	0	1	0	0	0	1333	922	32	2	2348	2	BAZ1A	14	35245596	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		35245596	72103944	63	42858										
GNPNAT1	0	genome.wustl.edu	37	chr14	53251239	53251239	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atttaagtcagcagtacaaaGaggcctcaaaaccaagcctt	7	10	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	14	53251239	53251239	G	C	SNP	GNPNAT1	ENST00000216410	human	ensembl	69_37n	-1	known	missense	c.130	p.L44V	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	GNPNAT1	HGNC	ENSG00000100522	20	0	0	11	18	62.07	-	-	-	C	53251239	G	C	53251239	3	2	444	1	0	0	0	0	1	0	0	0	6596	942	33	2	444	2	GNPNAT1	14	53251239	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	18005643	53251239	54098301	64	42859										
ARID4A	0	genome.wustl.edu	37	chr14	58831916	58831916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atagtattgctgaagaatctCaagaaggtctctgtgagagg	12	5	2	4			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	14	58831916	58831916	C	G	SNP	ARID4A	ENST00000355431	human	ensembl	69_37n	1	known	missense	c.3109	p.Q1037E	0.997	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219	104	0	0	78	97	55.11	-	-	-	G	58831916	C	G	58831916	3	3	444	1	0	0	0	0	1	0	0	0	921	827	29	2	3183	2	ARID4A	14	58831916	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	5580677	58831916	48517624	65	42860										
TGFB3	0	genome.wustl.edu	37	chr14	76437505	76437505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctcacgcacagtgtcagtgaCatcaaaggacagccactcgg	10	13	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	14	76437505	76437505	C	T	SNP	TGFB3	ENST00000238682	human	ensembl	69_37n	-1	known	missense	c.610	p.V204I	1.000	pfam_TGF-b_N,pirsf_TGF-beta,prints_TGF-beta	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699	115	1	0.85	23	21	47.73	-	-	-	T	76437505	C	T	76437505	3	4	444	1	0	0	0	0	1	0	0	0	15914	478	17	4	648	4	TGFB3	14	76437505	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	17605589	76437505	30912035	66	42861										
PRTG	0	genome.wustl.edu	37	chr15	56032653	56032653	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gccaagcactgataaaatccTtcatcggactgctctcctcg	7	14	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	15	56032653	56032653	T	A	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.324	p.E108D	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	354	0	0	200	98	32.89	-	-	-	A	56032653	T	A	56032653	3	1	444	1	0	0	0	0	1	0	0	0	12718	1606	56	5	3204	5	PRTG	15	56032653	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09		56032653	46498739	67	42862										
NEDD4	0	genome.wustl.edu	37	chr15	56140722	56140723	+	Frame_Shift_Ins	INS	-	-	C													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atcgcactgcacatactgtgINSatttatgtagaagattcttc							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	15	56140722	56140723	-	C	INS	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2737_2736	p.H912fs	1.000:1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	103	0	0	140	133	48.72	-	-	-	C	56140723	-	C	56140722	7	5	444	1	0	1	1	0	0	0	0	0	10382	1290	45	0	1278	0	NEDD4	15	56140722	Frame_Shift_Ins	INS	-	TCGA-B6-A0RE-01A-11W-A071-09	108069	56140722	46390670	68	42863										
RPL4	0	genome.wustl.edu	37	chr15	66794137	66794137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tgaacggacctttttgatatCattccaggctttaagtttct	7	8	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	15	66794137	66794137	C	G	SNP	RPL4	ENST00000307961	human	ensembl	69_37n	-1	known	missense	c.535	p.D179H	1.000	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	-	no_errors	RPL4	HGNC	ENSG00000174444	120	0	0	47	63	57.27	-	-	-	G	66794137	C	G	66794137	3	3	444	1	0	0	0	0	1	0	0	0	13681	826	29	2	772	2	RPL4	15	66794137	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	10653415	66794137	35737255	69	42864										
ADAMTS17	0	genome.wustl.edu	37	chr15	100801809	100801809	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tgacagaagctctccagggaCcgctcaccatggtgcccaat	10	14	2	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	15	100801809	100801809	C	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	silent	c.906	p.R302	1.000	pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	31	0	0	23	5	17.86	-	-	-	A	100801809	C	A	100801809	2	1	444	1	0	0	0	0	0	0	0	1	262	494	18	4		4	ADAMTS17	15	100801809	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	34007672	100801809	1729583	70	42865										
SEC14L5	0	genome.wustl.edu	37	chr16	5009367	5009367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ctgtccgagtctacaagtacCcgtttgagctggtcatggcg	12	11	2	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	16	5009367	5009367	C	T	SNP	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	missense	c.43	p.P15S	0.999	pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	159	0	0	16	25	60.98	-	-	-	T	5009367	C	T	5009367	3	4	444	1	0	0	0	0	1	0	0	0	14073	623	22	4	45	4	SEC14L5	16	5009367	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		5009367	85345386	71	42866										
BCKDK	0	genome.wustl.edu	37	chr16	31122020	31122022	+	In_Frame_Del	DEL	CGG	CGG	-													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tccggccagcctgactttgtCggcatcatctgtactcgtct							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	16	31122020	31122022	CGG	-	DEL	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	in_frame_del	c.654_656	p.G219in_frame_del	0.970:1.000:1.000	pfam_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	54	0	0	26	3	10	-	-	-	-	31122022	CGG	-	31122020	7	5	444	1	0	1	0	1	0	0	0	0	1365	871	31	0	680	0	BCKDK	16	31122020	In_Frame_Del	DEL	CGG	TCGA-B6-A0RE-01A-11W-A071-09	26112653	31122020	59232733	72	42867										
DPEP3	0	genome.wustl.edu	37	chr16	68010014	68010014	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	accttttccacttgtctgaaGacccgcagcaggtttccacg	8	14	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	16	68010014	68010014	G	C	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	silent	c.1287	p.V429	1.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	267	0	0	26	66	71.74	-	-	-	C	68010014	G	C	68010014	2	2	444	1	0	0	0	0	0	0	0	1	4750	929	33	2		2	DPEP3	16	68010014	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	36887994	68010014	22344739	73	42868										
TP53	0	genome.wustl.edu	37	chr17	7577031	7577031	+	Frame_Shift_Del	DEL	T	T	-													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttgcttacctcgcttagtgcTccctgggggcagctcgtggt							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	17	7577031	7577031	T	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.907	p.S303fs	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	269	0	0	45	52	49.52	-	-	-	-	7577031	T	-	7577031	7	5	444	1	0	1	0	1	0	0	0	0	16477	1551	54	0	379	0	TP53	17	7577031	Frame_Shift_Del	DEL	T	TCGA-B6-A0RE-01A-11W-A071-09		7577031	73618179	74	42869										
PSMD3	0	genome.wustl.edu	37	chr17	38140605	38140605	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tcaggcaaggagccgagattCgtgctgcgggccctgcggat	16	11	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	17	38140605	38140605	C	T	SNP	PSMD3	ENST00000264639	human	ensembl	69_37n	1	known	silent	c.279	p.F93	0.835	NULL	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	111	0	0	42	7	14.29	-	-	-	T	38140605	C	T	38140605	2	4	444	1	0	0	0	0	0	0	0	1	12779	883	31	1		1	PSMD3	17	38140605	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	30563574	38140605	43054605	75	42870										
KRT222	0	genome.wustl.edu	37	chr17	38816255	38816255	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gtacctgatttcttctttttCtaggaggtggcgataagttg	11	6	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	17	38816255	38816255	C	G	SNP	KRT222	ENST00000394052	human	ensembl	69_37n	-1	known	missense	c.430	p.E144Q	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424	128	1	0.78	89	147	61.51	-	-	-	G	38816255	C	G	38816255	3	3	444	1	0	0	0	0	1	0	0	0	8512	922	32	2	473	2	KRT222	17	38816255	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	675650	38816255	42378955	76	42871										
SP6	0	genome.wustl.edu	37	chr17	45925604	45925604	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cctggcagctcatagccctgCgagaagtccacctccgggcc	11	17	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	17	45925604	45925604	C	G	SNP	SP6	ENST00000342234	human	ensembl	69_37n	-1	known	silent	c.192	p.S64	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120	14	0	0	6	5	45.45	-	-	-	G	45925604	C	G	45925604	2	3	444	1	0	0	0	0	0	0	0	1	15057	755	27	3		3	SP6	17	45925604	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	7109349	45925604	35269606	77	42872										
MYO5B	0	genome.wustl.edu	37	chr18	47500828	47500828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	actgggcatagatgtgcttcGccagggcgttgcgcgcattg	15	10	0	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	18	47500828	47500828	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.1214	p.A405V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	256	1	0.39	166	37	18.23	-	-	-	A	47500828	G	A	47500828	3	1	444	1	0	0	0	0	1	0	0	0	10151	1087	38	1	4456	1	MYO5B	18	47500828	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		47500828	30576420	78	42873										
CDH19	0	genome.wustl.edu	37	chr18	64197168	64197168	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	attgatgttaagaacttgcaCatacagtgggatcgaagaga	11	5	0	3			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	18	64197168	64197168	C	G	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	missense	c.1372	p.V458L	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	37	0	0	89	35	28.23	-	-	-	G	64197168	C	G	64197168	3	3	444	1	0	0	0	0	1	0	0	0	3133	478	17	4	962	4	CDH19	18	64197168	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	16696340	64197168	13880080	79	42874										
DOT1L	0	genome.wustl.edu	37	chr19	2220127	2220127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aggagcacccccagtcccgtGctgcagccccgtgacccctc	10	20	0	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	2220127	2220127	G	T	SNP	DOT1L	ENST00000440640	human	ensembl	69_37n	1	novel	missense	c.2072	p.C691F	0.714	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOT1L	HGNC	ENSG00000104885	15	0	0	3	5	62.5	-	-	-	T	2220127	G	T	2220127	3	4	444	1	0	0	0	0	1	0	0	0	4744	1306	46	4	2802	4	DOT1L	19	2220127	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		2220127	56908856	80	42875										
PIAS4	0	genome.wustl.edu	37	chr19	4013263	4013263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	acggactgggacggttgcccGccaagaccctcaagccagaa	12	14	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	4013263	4013263	G	A	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	1	known	missense	c.370	p.A124T	0.475	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	24	0	0	17	8	32	-	-	-	A	4013263	G	A	4013263	3	1	444	1	0	0	0	0	1	0	0	0	11952	1087	38	1	376	1	PIAS4	19	4013263	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	1793136	4013263	55115720	81	42876										
C19orf43	0	genome.wustl.edu	37	chr19	12841864	12841864	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	catgtacttggcccacgcgtCacctttacttgttaatacct	6	13	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	12841864	12841864	C	T	SNP	C19orf43	ENST00000242784	human	ensembl	69_37n	-1	known	missense	c.442	p.D148N	1.000	NULL	NULL	-	no_errors	C19orf43	HGNC	ENSG00000123144	184	0	0	33	16	32	-	-	-	T	12841864	C	T	12841864	3	4	444	1	0	0	0	0	1	0	0	0	1944	826	29	2	92	2	C19orf43	19	12841864	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	8828601	12841864	46287119	82	42877										
PDE4C	0	genome.wustl.edu	37	chr19	18322580	18322580	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cctgccaacctgggacttctCcactgaggccgtatgcttgt	10	14	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	18322580	18322580	C	G	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	missense	c.1780	p.E594Q	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	103	0	0	41	11	21.15	-	-	-	G	18322580	C	G	18322580	3	3	444	1	0	0	0	0	1	0	0	0	11714	864	30	2	366	2	PDE4C	19	18322580	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	5480716	18322580	40806403	83	42878										
LSM4	0	genome.wustl.edu	37	chr19	18426844	18426844	+	Frame_Shift_Del	DEL	T	T	-													0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gagtactcaccatggggtgaTtctgagccgtcttcagcagt							TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	18426844	18426844	T	-	DEL	LSM4	ENST00000252816	human	ensembl	69_37n	-1	known	frame_shift_del	c.35	p.N12fs	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM4	HGNC	ENSG00000130520	72	0	0	33	32	49.23	-	-	-	-	18426844	T	-	18426844	7	5	444	1	0	1	0	1	0	0	0	0	9124	1493	52	0	400	0	LSM4	19	18426844	Frame_Shift_Del	DEL	T	TCGA-B6-A0RE-01A-11W-A071-09	104264	18426844	40702139	84	42879										
ZNF714	0	genome.wustl.edu	37	chr19	21299680	21299680	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	aaagattcttttcaacaagtGatactgagaagacatggcaa	8	6	2	4			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	21299680	21299680	G	C	SNP	ZNF714	ENST00000291770	human	ensembl	69_37n	1	known	silent	c.210	p.V70	0.006	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352	143	0	0	111	89	44.5	-	-	-	C	21299680	G	C	21299680	2	2	444	1	0	0	0	0	0	0	0	1	18214	1277	45	2		2	ZNF714	19	21299680	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	2872836	21299680	37829303	85	42880										
ZNF526	0	genome.wustl.edu	37	chr19	42730170	42730170	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	actgtggcaagcgcttcacaCagagctccaacctgcagcag	10	14	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	42730170	42730170	C	G	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	missense	c.1615	p.Q539E	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	86	0	0	31	11	26.19	-	-	-	G	42730170	C	G	42730170	3	3	444	1	0	0	0	0	1	0	0	0	18063	479	17	4	1617	4	ZNF526	19	42730170	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	21430490	42730170	16398813	86	42881										
EHD2	0	genome.wustl.edu	37	chr19	48229232	48229232	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gtggtgctcaacaaggccgaCatggtggagacgcagcagct	15	10	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	48229232	48229232	C	G	SNP	EHD2	ENST00000263277	human	ensembl	69_37n	1	known	missense	c.666	p.D222E	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	155	0	0	43	12	21.82	-	-	-	G	48229232	C	G	48229232	3	3	444	1	0	0	0	0	1	0	0	0	5013	477	17	4	676	4	EHD2	19	48229232	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	5499062	48229232	10899751	87	42882										
FCAR	0	genome.wustl.edu	37	chr19	55399642	55399642	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	tggtccttccccagtaatgcCttggagcttgtggtcacagg	12	11	1	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	55399642	55399642	C	G	SNP	FCAR	ENST00000355524	human	ensembl	69_37n	1	known	silent	c.630	p.A210	0.543	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	61	0	0	26	4	13.33	-	-	-	G	55399642	C	G	55399642	2	3	444	1	0	0	0	0	0	0	0	1	5819	668	24	4		4	FCAR	19	55399642	Silent	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	7170410	55399642	3729341	88	42883										
EPS8L1	0	genome.wustl.edu	37	chr19	55598981	55598981	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ggtggaaatggaggtcatttGacctgccaggcgcccttcgc	14	11	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	55598981	55598981	G	C	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	nonstop	c.2171	p.*724S	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	106	0	0	39	10	20.41	-	-	-	C	55598981	G	C	55598981	4	2	444	1	0	0	0	0	0	0	0	0	5232	1285	45	2	2297	2	EPS8L1	19	55598981	Nonstop_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	199339	55598981	3530002	89	42884										
NLRP5	0	genome.wustl.edu	37	chr19	56565089	56565089	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	gacacctgaagagcctggatCtcacggacaatgccctgggt	12	12	1	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	19	56565089	56565089	C	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	missense	c.3214	p.L1072I	0.267	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	114	0	0	43	12	21.82	-	-	-	A	56565089	C	A	56565089	3	1	444	1	0	0	0	0	1	0	0	0	10552	913	32	2	3264	2	NLRP5	19	56565089	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09	966108	56565089	2563894	90	42885										
ENTPD6	0	genome.wustl.edu	37	chr20	25198181	25198181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	cggctacctgacggcactgcGgatgtttaacaggacctaca	11	12	0	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	20	25198181	25198181	G	A	SNP	ENTPD6	ENST00000376652	human	ensembl	69_37n	1	known	missense	c.842	p.R281Q	0.925	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586	100	0	0	28	16	36.36	-	-	-	A	25198181	G	A	25198181	3	1	444	1	0	0	0	0	1	0	0	0	5180	1116	39	1	879	1	ENTPD6	20	25198181	Missense_Mutation	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09		25198181	37827339	91	42886										
SLC2A10	0	genome.wustl.edu	37	chr20	45354529	45354529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	agtgaaggtggcagctacccTgaccgccatggggctggtgg	17	10	0	2			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	20	45354529	45354529	T	C	SNP	SLC2A10	ENST00000359271	human	ensembl	69_37n	1	known	missense	c.854	p.L285P	0.031	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496	167	0	0	67	12	15.19	-	-	-	C	45354529	T	C	45354529	3	2	444	1	0	0	0	0	1	0	0	0	14628	1580	55	5	860	5	SLC2A10	20	45354529	Missense_Mutation	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	20156348	45354529	17670991	92	42887										
GLA	0	genome.wustl.edu	37	chrX	100658891	100658891	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	ttggggagccatccaacagtCatcaatgcagaggtactcat	10	10	3	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	X	100658891	100658891	C	G	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.277	p.D93H	1.000	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	159	0	0	163	20	10.93	-	-	-	G	100658891	C	G	100658891	3	3	444	1	0	0	0	0	1	0	0	0	6478	826	29	2	1036	2	GLA	23	100658891	Missense_Mutation	SNP	C	TCGA-B6-A0RE-01A-11W-A071-09		100658891	54611669	93	42888										
LAMP2	0	genome.wustl.edu	37	chrX	119565295	119565295	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	atgggcacaaggaagttgtcGtcatctgcactgcagtcttg	12	9	3	0			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	X	119565295	119565295	G	A	SNP	LAMP2	ENST00000200639	human	ensembl	69_37n	-1	known	silent	c.1116	p.D372	0.631	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	156	0	0	184	80	30.3	-	-	-	A	119565295	G	A	119565295	2	1	444	1	0	0	0	0	0	0	0	1	8672	1136	40	1		1	LAMP2	23	119565295	Silent	SNP	G	TCGA-B6-A0RE-01A-11W-A071-09	18906404	119565295	35705265	94	42889										
AFF2	0	genome.wustl.edu	37	chrX	148037858	148037858	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	19	0.000591787626101517	2.57491582491582	3.53291536050157	1.46363636363636	0.0138973359448369	0.174251212231417	12	accctcagcaccttaatgagTagcagtggcagcaacaacaa	8	12	1	1			TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db2bd5cf-f0a7-4874-89eb-15029447dae1	21d6d4ec-23c7-470d-8654-59d20f56c9a6	X	148037858	148037858	T	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.2283	p.S761	0.961	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	246	0	0	149	44	22.68	-	-	-	C	148037858	T	C	148037858	2	2	444	1	0	0	0	0	0	0	0	1	357	1635	57	5		5	AFF2	23	148037858	Silent	SNP	T	TCGA-B6-A0RE-01A-11W-A071-09	28472563	148037858	7232702	95	42890										
SLC35E2	0	genome.wustl.edu	37	chr1	1670845	1670847	+	In_Frame_Del	DEL	TCA	TCA	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tggtgacggtcagtacgttcTcatctgtgccgccgtcgctc							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	1670845	1670847	TCA	-	DEL	SLC35E2	ENST00000246421	human	ensembl	69_37n	-1	known	in_frame_del	c.152_150	p.D50in_frame_del	1.000:1.000:0.988	NULL	pfam_DMT	-	no_errors	SLC35E2	HGNC	ENSG00000215790	8	0	0	4	2	33.33	-	-	-	-	1670847	TCA	-	1670845	7	5	445	1	0	1	0	1	0	0	0	0	14674	1551	54	0	1918	0	SLC35E2	1	1670845	In_Frame_Del	DEL	TCA	TCGA-B6-A0RG-01A-11W-A071-09		1670845	247579776	1	42891										
HSPG2	0	genome.wustl.edu	37	chr1	22199445	22199448	+	Frame_Shift_Del	DEL	CAGC	CAGC	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	atttccccgcagggtctgggCagcggggcagagcaggcccc							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	CAGC	CAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	22199445	22199448	CAGC	-	DEL	HSPG2	ENST00000427897	human	ensembl	69_37n	-1	known	frame_shift_del	c.496_493	p.A165fs	0.000:0.000:0.001:0.000	NULL	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HSPG2	HGNC	ENSG00000142798	63	0	0	11	16	57.14	-	-	-	-	22199448	CAGC	-	22199445	7	5	445	1	0	1	0	1	0	0	0	0	7484	725	25	0		0	HSPG2	1	22199445	Frame_Shift_Del	DEL	CAGC	TCGA-B6-A0RG-01A-11W-A071-09	20528600	22199445	227051176	2	42892										
ARID1A	0	genome.wustl.edu	37	chr1	27106498	27106498	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cttatgaaaaggaggaggaaCaggaccaaggggtgagctgc	16	6	0	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	27106498	27106498	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.6109	p.Q2037*	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	308	0	0	119	90	43.06	-	-	-	T	27106498	C	T	27106498	4	4	445	1	0	0	0	0	0	1	0	0	915	479	17	4	6187	4	ARID1A	1	27106498	Nonsense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	4907053	27106498	222144123	3	42893										
MARCKSL1	0	genome.wustl.edu	37	chr1	32800430	32800430	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gctcttcctctgtgggtgagGaggcagaagaatcaccccca	12	12	3	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	32800430	32800430	G	C	SNP	MARCKSL1	ENST00000329421	human	ensembl	69_37n	-1	known	missense	c.356	p.S119C	0.995	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKSL1	HGNC	ENSG00000175130	129	0	0	25	19	43.18	-	-	-	C	32800430	G	C	32800430	3	2	445	1	0	0	0	0	1	0	0	0	9381	1174	41	2	235	2	MARCKSL1	1	32800430	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	5693932	32800430	216450191	4	42894										
VANGL2	0	genome.wustl.edu	37	chr1	160390918	160390918	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cggaggcgggacaacagtcaCaatgagtactactatgagga	13	8	1	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	160390918	160390918	C	G	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.1014	p.H338Q	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	95	0	0	50	19	27.54	-	-	-	G	160390918	C	G	160390918	3	3	445	1	0	0	0	0	1	0	0	0	17217	477	17	4	1032	4	VANGL2	1	160390918	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	127590488	160390918	88859703	5	42895										
CDK18	0	genome.wustl.edu	37	chr1	205493367	205493367	+	Frame_Shift_Del	DEL	G	G	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cctgtcaccacaggacgtcaGcaagaggctctctctgccca							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	1	205493367	205493367	G	-	DEL	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	frame_shift_del	c.371	p.S124fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	187	0	0	75	87	53.37	-	-	-	-	205493367	G	-	205493367	7	5	445	1	0	1	0	1	0	0	0	0	3163	971	34	0	381	0	CDK18	1	205493367	Frame_Shift_Del	DEL	G	TCGA-B6-A0RG-01A-11W-A071-09	45102449	205493367	43757254	6	42896										
NEB	0	genome.wustl.edu	37	chr2	152381061	152381061	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tttggctgcctgtgtggcctTcttgatgtctggtcgatcag	13	9	3	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	2	152381061	152381061	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.22342	p.K7448E	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	235	0	0	180	37	17.05	-	-	-	C	152381061	T	C	152381061	3	2	445	1	0	0	0	0	1	0	0	0	10374	1792	62	5	3359	5	NEB	2	152381061	Missense_Mutation	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09		152381061	90818312	7	42897										
PDE1A	0	genome.wustl.edu	37	chr2	183051216	183051216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tgcttgccacataggaagaaGtttcggcttttgaggcttcc	11	9	0	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	2	183051216	183051216	G	A	SNP	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	missense	c.1355	p.T452I	0.006	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252	134	0	0	120	23	16.08	-	-	-	A	183051216	G	A	183051216	3	1	445	1	0	0	0	0	1	0	0	0	11706	1029	36	4	342	4	PDE1A	2	183051216	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	30670155	183051216	60148157	8	42898										
ERBB4	0	genome.wustl.edu	37	chr2	212488741	212488741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gttgagcttgattgggtgctGtgccactgggagttaatggt	16	5	0	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	2	212488741	212488741	G	T	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.2108	p.T703K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	112	0	0	128	16	11.11	-	-	-	T	212488741	G	T	212488741	3	4	445	1	0	0	0	0	1	0	0	0	5246	1377	48	4	1862	4	ERBB4	2	212488741	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	29437525	212488741	30710632	9	42899										
DCBLD2	0	genome.wustl.edu	37	chr3	98538119	98538119	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gtggcaaaagcagcccaaggCggtccaggttttttcagcct	12	11	1	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	3	98538119	98538119	C	A	SNP	DCBLD2	ENST00000326857	human	ensembl	69_37n	-1	known	silent	c.1014	p.P338	0.991	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_LCCL,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019	70	0	0	67	13	16.05	-	-	-	A	98538119	C	A	98538119	2	1	445	1	0	0	0	0	0	0	0	1	4312	755	27	3		3	DCBLD2	3	98538119	Silent	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		98538119	99484311	10	42900										
ATR	0	genome.wustl.edu	37	chr3	142231145	142231145	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tttgatttgctgtgtggacaTttctcagctttcagtgcctg	10	8	2	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	3	142231145	142231145	T	C	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	silent	c.4809	p.K1603	0.505	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	157	0	0	196	36	15.52	-	-	-	C	142231145	T	C	142231145	2	2	445	1	0	0	0	0	0	0	0	1	1208	1490	52	5		5	ATR	3	142231145	Silent	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09	43693026	142231145	55791285	11	42901										
PLCH1	0	genome.wustl.edu	37	chr3	155203418	155203418	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	atctccaatggatcgcttccGtacataatgggaattgtttt	8	8	1	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	3	155203418	155203418	G	T	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	silent	c.2725	p.R909	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	73	0	0	44	79	64.23	-	-	-	T	155203418	G	T	155203418	2	4	445	1	0	0	0	0	0	0	0	1	12111	1144	40	3		3	PLCH1	3	155203418	Silent	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	12972273	155203418	42819012	12	42902										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	124	0	0	212	103	32.7	-	-	-	G	178952085	A	G	178952085	3	3	445	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	23748667	178952085	19070345	13	42903										
DGKG	0	genome.wustl.edu	37	chr3	186015250	186015250	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tcgtctgctttggtggcattAtctgcattctgtatattagt	9	7	3	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	3	186015250	186015250	A	G	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	silent	c.333	p.D111	0.576	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	220	0	0	228	26	10.16	-	-	-	G	186015250	A	G	186015250	2	3	445	1	0	0	0	0	0	0	0	1	4505	446	16	5		5	DGKG	3	186015250	Silent	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	7063165	186015250	12007180	14	42904										
CAMK2D	0	genome.wustl.edu	37	chr4	114378512	114378512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tgatgggtactgttggtgacCccgagcgatgaaaatgaaca	13	7	0	4			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	4	114378512	114378512	C	T	SNP	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	missense	c.1487	p.G496E	1.000	pfam_Ca/CaM-dep_prot_kinase-assoc,superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	175	0	0	165	36	17.82	-	-	-	T	114378512	C	T	114378512	3	4	445	1	0	0	0	0	1	0	0	0	2626	623	22	4	107	4	CAMK2D	4	114378512	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		114378512	76775764	15	42905										
SPINK13	0	genome.wustl.edu	37	chr5	147661790	147661790	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	agtgtttcttttgtgttgaaCagaggtaagttcagaataaa	10	3	2	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	5	147661790	147661790	C	G	SNP	SPINK13	ENST00000398450	human	ensembl	69_37n	1	known	missense	c.232	p.Q78E	0.046	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	-	no_errors	SPINK13	HGNC	ENSG00000214510	227	0	0	181	33	15.42	-	-	-	G	147661790	C	G	147661790	3	3	445	1	0	0	0	0	1	0	0	0	15149	479	17	4	242	4	SPINK13	5	147661790	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		147661790	33253470	16	42906										
PPT2	0	genome.wustl.edu	37	chr6	32130348	32130348	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cccaaatctctttgtagcttCtttggtttctatgatgcaaa	6	9	3	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	6	32130348	32130348	C	G	SNP	PPT2	ENST00000361568	human	ensembl	69_37n	1	known	missense	c.732	p.F244L	1.000	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988	581	0	0	105	28	20.9	-	-	-	G	32130348	C	G	32130348	3	3	445	1	0	0	0	0	1	0	0	0	12489	912	32	2	762	2	PPT2	6	32130348	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		32130348	138984719	17	42907										
CUL9	0	genome.wustl.edu	37	chr6	43171720	43171720	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cctggtgcagaacatcacctCtcccggtaaccatgctgaca	8	15	2	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	6	43171720	43171720	C	G	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.4154	p.S1385C	0.018	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	237	0	0	164	47	22.27	-	-	-	G	43171720	C	G	43171720	3	3	445	1	0	0	0	0	1	0	0	0	4092	913	32	2	4228	2	CUL9	6	43171720	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	11041372	43171720	127943347	18	42908										
MYO6	0	genome.wustl.edu	37	chr6	76576288	76576288	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ttcataggaatatcagagacGacgaaggcttcattatcagg	10	7	4	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	6	76576288	76576288	G	C	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.1720	p.D574H	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	166	0	0	75	64	45.71	-	-	-	C	76576288	G	C	76576288	3	2	445	1	0	0	0	0	1	0	0	0	10153	1058	37	3	1782	3	MYO6	6	76576288	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	33404568	76576288	94538779	19	42909										
POU6F2	0	genome.wustl.edu	37	chr7	39247072	39247072	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cagccctcaaccagccaatcCtcattcccttcaacatggcg	5	18	3	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	7	39247072	39247072	C	G	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	missense	c.364	p.L122V	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	114	0	0	63	13	17.11	-	-	-	G	39247072	C	G	39247072	3	3	445	1	0	0	0	0	1	0	0	0	12358	681	24	4	378	4	POU6F2	7	39247072	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		39247072	119891591	20	42910										
CFTR	0	genome.wustl.edu	37	chr7	117188875	117188875	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ctggatccactggagcaggcAaggtagttcttttgttcttc	11	9	2	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	7	117188875	117188875	A	T	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	nonsense	c.1390	p.K464*	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	51	0	0	31	21	40.38	-	-	-	T	117188875	A	T	117188875	4	4	445	1	0	0	0	0	0	1	0	0	3323	131	5	5	1428	5	CFTR	7	117188875	Nonsense_Mutation	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	77941803	117188875	41949788	21	42911										
ADCY8	0	genome.wustl.edu	37	chr8	131793094	131793094	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tggtttcttagcgccgataaCgccagctaccactgagccgt	10	13	1	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	8	131793094	131793094	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.3298	p.V1100I	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	316	0	0	215	106	32.92	-	-	-	T	131793094	C	T	131793094	3	4	445	1	0	0	0	0	1	0	0	0	300	536	19	1	461	1	ADCY8	8	131793094	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		131793094	14570928	22	42912										
PTPRD	0	genome.wustl.edu	37	chr9	8341823	8341823	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ctgcttctaacagtgcatcaTggataaagatgtattggtct	9	7	3	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	9	8341823	8341823	T	G	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.4817	p.H1606P	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	331	0	0	253	268	51.34	-	-	-	G	8341823	T	G	8341823	3	3	445	1	0	0	0	0	1	0	0	0	12882	1464	51	5	949	5	PTPRD	9	8341823	Missense_Mutation	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09		8341823	132871608	23	42913										
ZCCHC6	0	genome.wustl.edu	37	chr9	88938364	88938364	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	acaacatgctctccacgtttCtgatcaacagtcaacagatg	6	12	4	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	9	88938364	88938364	C	G	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.2301	p.Q767H	0.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	196	1	0.51	157	136	46.42	-	-	-	G	88938364	C	G	88938364	3	3	445	1	0	0	0	0	1	0	0	0	17688	912	32	2	2246	2	ZCCHC6	9	88938364	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	80596541	88938364	52275067	24	42914										
GATA3	0	genome.wustl.edu	37	chr10	8111514	8111515	+	Frame_Shift_Del	DEL	GG	GG	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tctggaggaggaatgccaatGgggaccctgtctgcaatgcc							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	10	8111514	8111515	GG	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1003_1004	p.D336fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	61	0	0	29	21	42	-	-	-	-	8111515	GG	-	8111514	7	5	445	1	0	1	0	1	0	0	0	0	6305	1348	47	0	1017	0	GATA3	10	8111514	Frame_Shift_Del	DEL	GG	TCGA-B6-A0RG-01A-11W-A071-09		8111514	127423233	25	42915										
CUBN	0	genome.wustl.edu	37	chr10	16975114	16975114	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	atcacaaggctatcataggcAcacgttcggtgagattcaat	9	9	3	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	10	16975114	16975114	A	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.6096	p.C2032	0.048	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	134	0	0	90	86	48.59	-	-	-	G	16975114	A	G	16975114	2	3	445	1	0	0	0	0	0	0	0	1	4082	157	6	5		5	CUBN	10	16975114	Silent	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	8863600	16975114	118559633	26	42916										
ARHGAP12	0	genome.wustl.edu	37	chr10	32143011	32143011	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	taccttttcattagtatagtCactggtatataaggtatgcc	7	7	2	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	10	32143011	32143011	C	T	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.1072	p.D358N	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	62	0	0	67	13	16.05	-	-	-	T	32143011	C	T	32143011	3	4	445	1	0	0	0	0	1	0	0	0	867	826	29	2	1532	2	ARHGAP12	10	32143011	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	15167897	32143011	103391736	27	42917										
IRF7	0	genome.wustl.edu	37	chr11	612739	612739	+	Frame_Shift_Del	DEL	A	A	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ggctgaggctgctgctatccAgggaagacacaccctcacgc							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	11	612739	612739	A	-	DEL	IRF7	ENST00000330243	human	ensembl	69_37n	-1	known	frame_shift_del	c.1457	p.L486fs	1.000	superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF7	HGNC	ENSG00000185507	23	0	0	4	2	33.33	-	-	-	-	612739	A	-	612739	7	5	445	1	0	1	0	1	0	0	0	0	7889	188	7	0	97	0	IRF7	11	612739	Frame_Shift_Del	DEL	A	TCGA-B6-A0RG-01A-11W-A071-09		612739	134393777	28	42918										
TRIM21	0	genome.wustl.edu	37	chr11	4410964	4410964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tcttctcagttcccctaatgCcacctggagcttctcctgca	6	16	3	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	11	4410964	4410964	C	T	SNP	TRIM21	ENST00000254436	human	ensembl	69_37n	-1	known	missense	c.424	p.A142T	0.146	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109	235	0	0	94	13	12.15	-	-	-	T	4410964	C	T	4410964	3	4	445	1	0	0	0	0	1	0	0	0	16591	739	26	4	1023	4	TRIM21	11	4410964	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	3798225	4410964	130595552	29	42919										
RAG1	0	genome.wustl.edu	37	chr11	36595870	36595870	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	atatccatgcttccctactgAcctggagagtccagtgaagt	9	11	0	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	11	36595870	36595870	A	T	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.1016	p.D339V	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	143	0	0	120	34	21.94	-	-	-	T	36595870	A	T	36595870	3	4	445	1	0	0	0	0	1	0	0	0	13086	275	10	5	1018	5	RAG1	11	36595870	Missense_Mutation	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	32184906	36595870	98410646	30	42920										
B3GAT3	0	genome.wustl.edu	37	chr11	62383253	62383253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	catcttgggcttctctgtccGagtatgccacaccagtacct	8	14	2	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	11	62383253	62383253	G	A	SNP	B3GAT3	ENST00000265471	human	ensembl	69_37n	-1	known	missense	c.928	p.R310W	0.981	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT3	HGNC	ENSG00000149541	31	0	0	7	9	56.25	-	-	-	A	62383253	G	A	62383253	3	1	445	1	0	0	0	0	1	0	0	0	1259	1057	37	1	83	1	B3GAT3	11	62383253	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	25787383	62383253	72623263	31	42921										
PZP	0	genome.wustl.edu	37	chr12	9307416	9307416	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gccttgggtctctgagggcgCtcccaatggacgaggttgtc	15	11	1	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	12	9307416	9307416	C	G	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.3570	p.E1190D	0.011	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	49	0	0	35	27	42.86	-	-	-	G	9307416	C	G	9307416	3	3	445	1	0	0	0	0	1	0	0	0	12952	796	28	4	910	4	PZP	12	9307416	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		9307416	124544479	32	42922										
FAM71C	0	genome.wustl.edu	37	chr12	100042152	100042152	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tgacgtgcacaaccgtgcccGaatggtaacaatgggcatcg	12	11	0	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	12	100042152	100042152	G	A	SNP	FAM71C	ENST00000324341	human	ensembl	69_37n	1	known	missense	c.200	p.R67Q	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71C	HGNC	ENSG00000180219	161	0	0	148	20	11.9	-	-	-	A	100042152	G	A	100042152	3	1	445	1	0	0	0	0	1	0	0	0	5654	1058	37	1	202	1	FAM71C	12	100042152	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	90734736	100042152	33809743	33	42923										
UTP20	0	genome.wustl.edu	37	chr12	101748696	101748696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	agaaggaatatacatgcaagAgtttgtcagacaacggacaa	10	6	1	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	12	101748696	101748696	A	G	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.5194	p.S1732G	0.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	138	0	0	103	84	44.44	-	-	-	G	101748696	A	G	101748696	3	3	445	1	0	0	0	0	1	0	0	0	17196	304	11	5	5356	5	UTP20	12	101748696	Missense_Mutation	SNP	A	TCGA-B6-A0RG-01A-11W-A071-09	1706544	101748696	32103199	34	42924										
PARP4	0	genome.wustl.edu	37	chr13	25023909	25023909	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	aaaatattcaaatactccggCaccacactgggacaaaatcc	5	12	1	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	13	25023909	25023909	C	A	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3061	p.A1021S	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	183	0	0	57	15	20.83	-	-	-	A	25023909	C	A	25023909	3	1	445	1	0	0	0	0	1	0	0	0	11536	710	25	4	2153	4	PARP4	13	25023909	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		25023909	90145969	35	42925										
PARP4	0	genome.wustl.edu	37	chr13	25034250	25034250	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cttagccttagggggtaagtTtccaacacttacagtaaaaa	8	8	0	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	13	25034250	25034250	T	A	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.2158	p.N720Y	1.000	pfam_VIT,smart_VIT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	136	0	0	63	24	27.59	-	-	-	A	25034250	T	A	25034250	3	1	445	1	0	0	0	0	1	0	0	0	11536	1841	64	5	3084	5	PARP4	13	25034250	Missense_Mutation	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09	10341	25034250	90135628	36	42926										
CYSLTR2	0	genome.wustl.edu	37	chr13	49281046	49281046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	aataacaacagcaggaactgCacaattgaaaacttcaagag	7	8	1	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	13	49281046	49281046	C	T	SNP	CYSLTR2	ENST00000282018	human	ensembl	69_37n	1	known	silent	c.93	p.C31	0.090	prints_CLT2_recept,prints_Protea_act_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_CLT2_recept,prints_Cyst_leuk_rcpt,prints_P2_purnocptor,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR2	HGNC	ENSG00000152207	127	0	0	15	144	90.57	-	-	-	T	49281046	C	T	49281046	2	4	445	1	0	0	0	0	0	0	0	1	4233	718	25	4		4	CYSLTR2	13	49281046	Silent	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	24246796	49281046	65888832	37	42927										
HECTD1	0	genome.wustl.edu	37	chr14	31597881	31597881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	atcactgctgcttcggcttaGattcatgttgttcgtggcat	10	9	2	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	14	31597881	31597881	G	C	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.4696	p.L1566V	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	122	0	0	88	64	42.11	-	-	-	C	31597881	G	C	31597881	3	2	445	1	0	0	0	0	1	0	0	0	7090	933	33	2	3212	2	HECTD1	14	31597881	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09		31597881	75751659	38	42928										
SYNM	0	genome.wustl.edu	37	chr15	99671359	99671359	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	aagaaattaaaataccccacGaattccacacctccatgaag	4	12	0	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	15	99671359	99671359	G	T	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	nonsense	c.2791	p.E931*	0.617	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	27	0	0	22	5	18.52	-	-	-	T	99671359	G	T	99671359	4	4	445	1	0	0	0	0	0	1	0	0	15547	1059	37	3	2807	3	SYNM	15	99671359	Nonsense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09		99671359	2860033	39	42929										
KIAA0430	0	genome.wustl.edu	37	chr16	15727535	15727538	+	Frame_Shift_Del	DEL	ATGA	ATGA	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tactgatgtcacatacacagAtgaattctgcttctctgtgg							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	ATGA	ATGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	16	15727535	15727538	ATGA	-	DEL	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	frame_shift_del	c.1172_1169	p.F390fs	1.000:1.000:1.000:1.000	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	174	0	0	115	62	35.03	-	-	-	-	15727538	ATGA	-	15727535	7	5	445	1	0	1	0	1	0	0	0	0	8229	333	12	0	4151	0	KIAA0430	16	15727535	Frame_Shift_Del	DEL	ATGA	TCGA-B6-A0RG-01A-11W-A071-09		15727535	74627218	40	42930										
TNRC6A	0	genome.wustl.edu	37	chr16	24831678	24831678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	attctgacgccagatataccCcaggtaagatgcagtcgtaa	9	10	1	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	16	24831678	24831678	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	missense	c.5299	p.P1767S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	144	0	0	66	13	16.46	-	-	-	T	24831678	C	T	24831678	3	4	445	1	0	0	0	0	1	0	0	0	16435	623	22	4	5385	4	TNRC6A	16	24831678	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	9104143	24831678	65523075	41	42931										
CHD9	0	genome.wustl.edu	37	chr16	53308140	53308140	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tttagggttttgcttcgtgtGagaatgctgtattatctaaa	10	4	1	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	16	53308140	53308140	G	A	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	silent	c.4893	p.V1631	0.665	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	55	0	0	6	32	84.21	-	-	-	A	53308140	G	A	53308140	2	1	445	1	0	0	0	0	0	0	0	1	3361	1277	45	2		2	CHD9	16	53308140	Silent	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	28476462	53308140	37046613	42	42932										
ZFHX3	0	genome.wustl.edu	37	chr16	72832049	72832049	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ccgagtcttcttgtactgacCcagagtcactgcccgttggg	11	13	3	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	16	72832049	72832049	C	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.4532	p.G1511V	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	449	1	0.22	28	120	81.08	-	-	-	A	72832049	C	A	72832049	3	1	445	1	0	0	0	0	1	0	0	0	17730	623	22	4	6587	4	ZFHX3	16	72832049	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	19523909	72832049	17522704	43	42933										
MAP2K4	0	genome.wustl.edu	37	chr17	12016647	12016648	+	Frame_Shift_Del	DEL	AA	AA	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gtggactctattgccaagacAagagatgctggctgtaggcc							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	17	12016647	12016648	AA	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_del	c.816_817	p.D274fs	0.986:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	144	0	0	24	80	70.18	-	-	-	-	12016648	AA	-	12016647	7	5	445	1	0	1	0	1	0	0	0	0	9310	117	5	0	809	0	MAP2K4	17	12016647	Frame_Shift_Del	DEL	AA	TCGA-B6-A0RG-01A-11W-A071-09		12016647	69178563	44	42934										
HOXB3	0	genome.wustl.edu	37	chr17	46628038	46628038	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ggggtcggagggtacttctgCggggcgccgcagcctttgag	19	10	1	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	17	46628038	46628038	C	T	SNP	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	silent	c.954	p.P318	0.990	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	43	0	0	35	5	12.5	-	-	-	T	46628038	C	T	46628038	2	4	445	1	0	0	0	0	0	0	0	1	7353	755	27	1		1	HOXB3	17	46628038	Silent	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	34611391	46628038	34567172	45	42935										
PIAS2	0	genome.wustl.edu	37	chr18	44392457	44392457	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tggttatgacccctgtctcaCtcctgctgctggatgaacta	9	12	1	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	18	44392457	44392457	C	G	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.1805	p.S602T	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	68	0	0	67	11	14.1	-	-	-	G	44392457	C	G	44392457	3	3	445	1	0	0	0	0	1	0	0	0	11950	565	20	4	64	4	PIAS2	18	44392457	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09		44392457	33684791	46	42936										
FUT3	0	genome.wustl.edu	37	chr19	5843908	5843908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gcgaaagtagctcaggtagcGggcgtggtccttgtccagct	15	10	1	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	19	5843908	5843908	G	T	SNP	FUT3	ENST00000303225	human	ensembl	69_37n	-1	known	missense	c.943	p.R315S	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124	104	0	0	25	10	28.57	-	-	-	T	5843908	G	T	5843908	3	4	445	1	0	0	0	0	1	0	0	0	6154	1116	39	3	146	3	FUT3	19	5843908	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09		5843908	53285075	47	42937										
IL27RA	0	genome.wustl.edu	37	chr19	14143218	14143218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gcagcgccgggccactgcagTgctacggagttggacccttg	15	13	0	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	19	14143218	14143218	T	G	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.121	p.C41G	0.984	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	104	0	0	20	5	20	-	-	-	G	14143218	T	G	14143218	3	3	445	1	0	0	0	0	1	0	0	0	7735	1696	59	5	127	5	IL27RA	19	14143218	Missense_Mutation	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09	8299310	14143218	44985765	48	42938										
FKBP8	0	genome.wustl.edu	37	chr19	18652645	18652645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	cagctcactcaggtcatcctCttcctcctcttcctcctcct	3	20	5	0			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	19	18652645	18652645	C	G	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.223	p.E75Q	0.916	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	33	0	0	19	4	17.39	-	-	-	G	18652645	C	G	18652645	3	3	445	1	0	0	0	0	1	0	0	0	5960	922	32	2	1137	2	FKBP8	19	18652645	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	4509427	18652645	40476338	49	42939										
CCDC61	0	genome.wustl.edu	37	chr19	46509884	46509885	+	Frame_Shift_Ins	INS	-	-	G													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tccctgcggaaccgcaagatINSggggggccgcccaggctcct							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	19	46509884	46509885	-	G	INS	CCDC61	ENST00000263284	human	ensembl	69_37n	1	known	frame_shift_ins	c.470_471	p.R160fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983	34	0	0	27	4	12.9	-	-	-	G	46509885	-	G	46509884	7	5	445	1	0	1	1	0	0	0	0	0	2859	1464	51	0	488	0	CCDC61	19	46509884	Frame_Shift_Ins	INS	-	TCGA-B6-A0RG-01A-11W-A071-09	27857239	46509884	12619099	50	42940										
ZNF347	0	genome.wustl.edu	37	chr19	53645287	53645287	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gaggaaagaccatgccacatCcattagatttgtaagggctt	10	8	0	2			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	19	53645287	53645287	C	G	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	missense	c.797	p.G266A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	342	0	0	339	92	21.25	-	-	-	G	53645287	C	G	53645287	3	3	445	1	0	0	0	0	1	0	0	0	17957	855	30	2	1729	2	ZNF347	19	53645287	Missense_Mutation	SNP	C	TCGA-B6-A0RG-01A-11W-A071-09	7135403	53645287	5483696	51	42941										
DNMT3B	0	genome.wustl.edu	37	chr20	31393152	31393152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ggctgttcccaggcccgtgaTagcatcaaagaatgataaac	10	10	1	3			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	20	31393152	31393152	T	C	SNP	DNMT3B	ENST00000328111	human	ensembl	69_37n	1	known	missense	c.2240	p.I747T	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3B	HGNC	ENSG00000088305	235	0	0	119	95	44.19	-	-	-	C	31393152	T	C	31393152	3	2	445	1	0	0	0	0	1	0	0	0	4712	1406	49	5	2358	5	DNMT3B	20	31393152	Missense_Mutation	SNP	T	TCGA-B6-A0RG-01A-11W-A071-09		31393152	31632368	52	42942										
TSSK2	0	genome.wustl.edu	37	chr22	19119973	19119973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	catctccggagctgaggtggGgaaagcaagcacctagcatg	14	10	1	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	22	19119973	19119973	G	A	SNP	TSSK2	ENST00000399635	human	ensembl	69_37n	1	known	missense	c.1061	p.G354E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK2	HGNC	ENSG00000206203	70	0	0	1	18	94.74	-	-	-	A	19119973	G	A	19119973	3	1	445	1	0	0	0	0	1	0	0	0	16765	1232	43	4	1063	4	TSSK2	22	19119973	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09		19119973	32184593	53	42943										
LZTR1	0	genome.wustl.edu	37	chr22	21350992	21350992	+	Frame_Shift_Del	DEL	T	T	-													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	aaccaggccccagctacttgTttgcggccccctactactac							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	22	21350992	21350992	T	-	DEL	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	frame_shift_del	c.2227	p.F743fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	66	0	0	6	2	25	-	-	-	-	21350992	T	-	21350992	7	5	445	1	0	1	0	1	0	0	0	0	9204	1725	60	0	2301	0	LZTR1	22	21350992	Frame_Shift_Del	DEL	T	TCGA-B6-A0RG-01A-11W-A071-09	2231019	21350992	29953574	54	42944										
TCF20	0	genome.wustl.edu	37	chr22	42564715	42564716	+	Frame_Shift_Ins	INS	-	-	G													0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	ttcgcggtcttgttctgcaaINSgggggggagagggcacggaa							TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	22	42564715	42564716	-	G	INS	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5827_5826	p.Q1943fs	1.000:1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	18	0	0	9	4	30.77	-	-	-	G	42564716	-	G	42564715	7	5	445	1	0	1	1	0	0	0	0	0	15785	69	3	0	81	0	TCF20	22	42564715	Frame_Shift_Ins	INS	-	TCGA-B6-A0RG-01A-11W-A071-09	21213723	42564715	8739851	55	42945										
ACSL4	0	genome.wustl.edu	37	chrX	108921590	108921590	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	gtcggccagtagaaccactaGtatacataacaatggccatg	9	10	0	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	X	108921590	108921590	G	C	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	missense	c.833	p.T278S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	218	0	0	110	60	35.29	-	-	-	C	108921590	G	C	108921590	3	2	445	1	0	0	0	0	1	0	0	0	179	1029	36	4	1342	4	ACSL4	23	108921590	Missense_Mutation	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09		108921590	46348970	56	42946										
RNF113A	0	genome.wustl.edu	37	chrX	119005193	119005193	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.298292553168836	1.74813432835821	2.49733475479744	0.998933901918977	0.286130536130536	0.930327025915261	0	tcaaagatggcttgtgcatcGcgctctttctctgtgtccag	10	11	3	1			TCGA-B6-A0RG-01A-11W-A071-09	TCGA-B6-A0RG-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9431c642-610e-4325-97b8-8b4c5c81cacd	83830a90-9963-4aa2-8bc1-ae3a292de36a	X	119005193	119005193	G	A	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	silent	c.384	p.R128	0.598	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	347	0	0	379	125	24.61	-	-	-	A	119005193	G	A	119005193	2	1	445	1	0	0	0	0	0	0	0	1	13513	1074	38	1		1	RNF113A	23	119005193	Silent	SNP	G	TCGA-B6-A0RG-01A-11W-A071-09	10083603	119005193	36265367	57	42947										
EPHB2	0	genome.wustl.edu	37	chr1	23222000	23222000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	gcatccaggagaagttgccaCtcatcatcggctcctcggcc	10	15	2	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	23222000	23222000	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	missense	c.1627	p.L543F	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	153	0	0	114	52	31.33	-	-	-	T	23222000	C	T	23222000	3	4	446	1	0	0	0	0	1	0	0	0	5212	565	20	4	1657	4	EPHB2	1	23222000	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		23222000	226028621	1	42948										
TSPAN1	0	genome.wustl.edu	37	chr1	46650495	46650495	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttgctggtagtgcctgccatCaagaaagattatggttccca	10	9	1	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	46650495	46650495	C	G	SNP	TSPAN1	ENST00000372003	human	ensembl	69_37n	1	known	missense	c.378	p.I126M	0.997	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN1	HGNC	ENSG00000117472	96	0	0	78	34	30.36	-	-	-	G	46650495	C	G	46650495	3	3	446	1	0	0	0	0	1	0	0	0	16729	816	29	2	392	2	TSPAN1	1	46650495	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	23428495	46650495	202600126	2	42949										
PTPN22	0	genome.wustl.edu	37	chr1	114397570	114397570	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	acactgtcatcctcttggtaAcaacgtacatcccagatgag	7	12	2	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	114397570	114397570	A	C	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.642	p.C214W	0.978	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	169	0	0	85	40	32	-	-	-	C	114397570	A	C	114397570	3	2	446	1	0	0	0	0	1	0	0	0	12870	41	2	5	1860	5	PTPN22	1	114397570	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	67747075	114397570	134853051	3	42950										
TARS2	0	genome.wustl.edu	37	chr1	150479529	150479529	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	cgagggtcccaaatgccgaaGaaattttctgagcctttgta	10	9	1	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	150479529	150479529	G	A	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.2146	p.E716K	0.997	superfamily_Anticodon-bd	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	89	0	0	121	49	28.82	-	-	-	A	150479529	G	A	150479529	3	1	446	1	0	0	0	0	1	0	0	0	15652	943	33	2	2216	2	TARS2	1	150479529	Missense_Mutation	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09	36081959	150479529	98771092	4	42951										
MIA3	0	genome.wustl.edu	37	chr1	222801435	222801435	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	gcacttgtatctgatgatgaGacaaccagactcgttacttc	8	10	1	4			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	222801435	222801435	G	A	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	silent	c.873	p.E291	0.929	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	109	0	0	140	24	14.63	-	-	-	A	222801435	G	A	222801435	2	1	446	1	0	0	0	0	0	0	0	1	9636	933	33	2		2	MIA3	1	222801435	Silent	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09	72321906	222801435	26449186	5	42952										
PSEN2	0	genome.wustl.edu	37	chr1	227069706	227069706	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	cacgccgcgctcctgccaggAgggcaggcagggcccagagg	17	15	0	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	1	227069706	227069706	A	G	SNP	PSEN2	ENST00000391872	human	ensembl	69_37n	1	known	missense	c.197	p.E66G	0.998	NULL	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	19	0	0	14	27	64.29	-	-	-	G	227069706	A	G	227069706	3	3	446	1	0	0	0	0	1	0	0	0	12731	304	11	5	100	5	PSEN2	1	227069706	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	4268271	227069706	22180915	6	42953										
IP6K2	0	genome.wustl.edu	37	chr3	48732632	48732633	+	Frame_Shift_Ins	INS	-	-	C													0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	tctcattgaagcggagcacgINScatgagtgccccccgacctg							TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	48732632	48732633	-	C	INS	IP6K2	ENST00000328631	human	ensembl	69_37n	-1	known	frame_shift_ins	c.93_92	p.C31fs	0.631:1.000	NULL	pfam_IPK	-	no_errors	IP6K2	HGNC	ENSG00000068745	104	0	0	64	36	36	-	-	-	C	48732633	-	C	48732632	7	5	446	1	0	1	1	0	0	0	0	0	7843	1079	38	0	1560	0	IP6K2	3	48732632	Frame_Shift_Ins	INS	-	TCGA-B6-A0RH-01A-21D-A10Y-09		48732632	149289798	7	42954										
PARP14	0	genome.wustl.edu	37	chr3	122399872	122399872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	agtgtgaggtccgccaggatCccaggagcccatcccgcttc	12	15	0	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	122399872	122399872	C	T	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.142	p.P48S	0.104	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	22	0	0	17	8	32	-	-	-	T	122399872	C	T	122399872	3	4	446	1	0	0	0	0	1	0	0	0	11531	855	30	2	144	2	PARP14	3	122399872	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	73667240	122399872	75622558	8	42955										
SI	0	genome.wustl.edu	37	chr3	164716394	164716394	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	aagccagtgtcctccccatcGtccactagtaggatacgtgg	10	13	0	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	164716394	164716394	G	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	nonsense	c.4474	p.R1492*	0.728	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	362	0	0	160	81	33.61	-	-	-	A	164716394	G	A	164716394	4	1	446	1	0	0	0	0	0	1	0	0	14386	1153	40	1	1053	1	SI	3	164716394	Nonsense_Mutation	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09	42316522	164716394	33306036	9	42956										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	163	0	0	57	102	64.15	-	-	-	A	178936091	G	A	178936091	3	1	446	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09	14219697	178936091	19086339	10	42957										
GPR125	0	genome.wustl.edu	37	chr4	22390523	22390523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttacaaaagtgatgaagctgGctggcccatagaaggctccc	11	10	0	3			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	4	22390523	22390523	G	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2771	p.A924V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	57	0	0	35	4	10.26	-	-	-	A	22390523	G	A	22390523	3	1	446	1	0	0	0	0	1	0	0	0	6689	1203	42	4	1198	4	GPR125	4	22390523	Missense_Mutation	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09		22390523	168763753	11	42958										
SEC24A	0	genome.wustl.edu	37	chr5	134059307	134059307	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	tctgccagaataatagctttCatctcttggcttagagagca	8	9	3	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	134059307	134059307	C	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	silent	c.3114	p.F1038	0.973	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	286	0	0	110	47	29.75	-	-	-	T	134059307	C	T	134059307	2	4	446	1	0	0	0	0	0	0	0	1	14082	825	29	2		2	SEC24A	5	134059307	Silent	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		134059307	46855953	12	42959										
PDGFRB	0	genome.wustl.edu	37	chr5	149510159	149510159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	gctggggcatgccccggccaCgacagcggactgtctgttcc	14	15	1	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	149510159	149510159	C	T	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.1310	p.R437H	0.850	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	29	0	0	23	11	32.35	-	-	-	T	149510159	C	T	149510159	3	4	446	1	0	0	0	0	1	0	0	0	11735	536	19	1	2070	1	PDGFRB	5	149510159	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	15450852	149510159	31405101	13	42960										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171766429	171766429	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttggctggcatcatcggcaaAatcacgcccggaggcttggg	14	11	2	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	5	171766429	171766429	A	C	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.1680	p.I560M	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	25	0	0	30	16	34.78	-	-	-	C	171766429	A	C	171766429	3	2	446	1	0	0	0	0	1	0	0	0	14346	10	1	5	1059	5	SH3PXD2B	5	171766429	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	22256270	171766429	9148831	14	42961										
RIPK1	0	genome.wustl.edu	37	chr6	3077012	3077012	+	RNA	DEL	G	G	-													0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttacagggtacagctctgccGgggggggaaaaagtggtacc							TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	6	3077012	3077012	G	-	DEL	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	46	0	0	20	3	12.5	-	-	-	-	3077012	G	-	3077012	6	5	446	0	1	1	0	1	0	0	0	0	13466	1131	39	0		0	RIPK1	6	3077012	RNA	DEL	G	TCGA-B6-A0RH-01A-21D-A10Y-09		3077012	168038055	15	42962										
FAM71F2	0	genome.wustl.edu	37	chr7	128317709	128317709	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	tgaccgaaaagatctactatCtgaagctccacgaaaaacac	6	11	2	3			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	7	128317709	128317709	C	T	SNP	FAM71F2	ENST00000480462	human	ensembl	69_37n	1	known	silent	c.457	p.L153	1.000	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71F2	HGNC	ENSG00000205085	66	0	0	29	14	32.56	-	-	-	T	128317709	C	T	128317709	2	4	446	1	0	0	0	0	0	0	0	1	5658	912	32	2		2	FAM71F2	7	128317709	Silent	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		128317709	30820954	16	42963										
CSGALNACT1	0	genome.wustl.edu	37	chr8	19263493	19263493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	agagtcctcgcacaggcgtcCgtaccactatgaggttgctg	12	12	0	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	8	19263493	19263493	C	T	SNP	CSGALNACT1	ENST00000311540	human	ensembl	69_37n	-1	known	missense	c.1397	p.R466Q	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408	74	0	0	34	37	52.11	-	-	-	T	19263493	C	T	19263493	3	4	446	1	0	0	0	0	1	0	0	0	3970	652	23	1	205	1	CSGALNACT1	8	19263493	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		19263493	127100529	17	42964										
SMARCA2	0	genome.wustl.edu	37	chr9	2116045	2116045	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	cttggagcatgaggaggaaaAtgaggtattagagaaaaccc	13	5	0	3			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	2116045	2116045	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.3680	p.N1227S	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	34	0	0	21	11	34.38	-	-	-	G	2116045	A	G	2116045	3	3	446	1	0	0	0	0	1	0	0	0	14858	101	4	5	3774	5	SMARCA2	9	2116045	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09		2116045	139097386	18	42965										
CTSL2	0	genome.wustl.edu	37	chr9	99798887	99798887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	aggccctagccatgaagccaCcattgcagccctgattgcct	9	15	0	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	99798887	99798887	C	G	SNP	CTSL2	ENST00000259470	human	ensembl	69_37n	-1	known	missense	c.539	p.G180A	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL2	HGNC	ENSG00000136943	150	0	0	126	32	20.13	-	-	-	G	99798887	C	G	99798887	3	3	446	1	0	0	0	0	1	0	0	0	4071	507	18	4	481	4	CTSL2	9	99798887	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	97682842	99798887	41414544	19	42966										
SVEP1	0	genome.wustl.edu	37	chr9	113169979	113169979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	tcatgtcgtcttcttgctcaAaatatccctggtcatctttg	6	11	6	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	9	113169979	113169979	A	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.7901	p.F2634S	0.087	NULL	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	56	0	0	38	18	32.14	-	-	-	G	113169979	A	G	113169979	3	3	446	1	0	0	0	0	1	0	0	0	15511	14	1	5	2858	5	SVEP1	9	113169979	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	13371092	113169979	28043452	20	42967										
MLLT10	0	genome.wustl.edu	37	chr10	21827790	21827790	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ggcattgttcaagtacccacTggaccgtggttttgcaggaa	12	9	1	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	10	21827790	21827790	T	A	SNP	MLLT10	ENST00000430455	human	ensembl	69_37n	1	known	missense	c.85	p.W29R	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLLT10	HGNC	ENSG00000078403	252	0	0	91	57	38.51	-	-	-	A	21827790	T	A	21827790	3	1	446	1	0	0	0	0	1	0	0	0	9697	1567	55	5	195	5	MLLT10	10	21827790	Missense_Mutation	SNP	T	TCGA-B6-A0RH-01A-21D-A10Y-09		21827790	113706957	21	42968										
DEPDC7	0	genome.wustl.edu	37	chr11	33047294	33047294	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	cacaagtggaagtgaaaaaaCgaaggcaccgtttaaaacga	10	7	0	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	11	33047294	33047294	C	T	SNP	DEPDC7	ENST00000241051	human	ensembl	69_37n	1	known	nonsense	c.163	p.R55*	0.980	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690	214	0	0	103	49	32.24	-	-	-	T	33047294	C	T	33047294	4	4	446	1	0	0	0	0	0	1	0	0	4480	528	19	1	219	1	DEPDC7	11	33047294	Nonsense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		33047294	101959222	22	42969										
CLEC4E	0	genome.wustl.edu	37	chr12	8692538	8692539	+	Frame_Shift_Del	DEL	CT	CT	-													0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	catttgggaagagaagcatcCtctctctgtagaaagaaaga							TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	12	8692538	8692539	CT	-	DEL	CLEC4E	ENST00000299663	human	ensembl	69_37n	-1	known	frame_shift_del	c.43_42	p.G15fs	0.000:0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4E	HGNC	ENSG00000166523	106	0	0	53	8	12.5	-	-	-	-	8692539	CT	-	8692538	7	5	446	1	0	1	0	1	0	0	0	0	3545	690	24	0	636	0	CLEC4E	12	8692538	Frame_Shift_Del	DEL	CT	TCGA-B6-A0RH-01A-21D-A10Y-09		8692538	125159357	23	42970										
TBK1	0	genome.wustl.edu	37	chr12	64875760	64875760	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	attcatgttttttcgctacaAcaaatgacagctcataagat	5	8	2	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	12	64875760	64875760	A	G	SNP	TBK1	ENST00000331710	human	ensembl	69_37n	1	known	silent	c.951	p.Q317	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TBK1	HGNC	ENSG00000183735	184	1	0.54	120	37	23.57	-	-	-	G	64875760	A	G	64875760	2	3	446	1	0	0	0	0	0	0	0	1	15732	40	2	5		5	TBK1	12	64875760	Silent	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	56183222	64875760	68976135	24	42971										
SYNE2	0	genome.wustl.edu	37	chr14	64636985	64636985	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttctcaaagctgacggatcgGtggcagaatgctgtccaggg	14	9	1	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	14	64636985	64636985	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.17040	p.R5680	0.150	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	182	0	0	80	46	36.51	-	-	-	A	64636985	G	A	64636985	2	1	446	1	0	0	0	0	0	0	0	1	15538	1248	44	4		4	SYNE2	14	64636985	Silent	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09		64636985	42712555	25	42972										
RTL1	0	genome.wustl.edu	37	chr14	101348922	101348922	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	gactcattgagtagatcaggActtcctggccataagaaagc	10	9	2	3			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	14	101348922	101348922	A	G	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2204	p.V735A	0.956	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	103	0	0	86	41	32.28	-	-	-	G	101348922	A	G	101348922	3	3	446	1	0	0	0	0	1	0	0	0	13810	275	10	5	1876	5	RTL1	14	101348922	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09	36711937	101348922	6000618	26	42973										
TMC5	0	genome.wustl.edu	37	chr16	19451502	19451502	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ctctgaacaatccagactacCccggcaccaggagcaatcca	7	16	1	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	16	19451502	19451502	C	G	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.142	p.P48A	0.001	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	122	0	0	76	31	28.97	-	-	-	G	19451502	C	G	19451502	3	3	446	1	0	0	0	0	1	0	0	0	16083	623	22	4	144	4	TMC5	16	19451502	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		19451502	70903251	27	42974										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	7578190	7578190	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220S	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	210	0	0	68	67	49.63	-	-	-	G	7578190	T	G	7578190	3	3	446	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-B6-A0RH-01A-21D-A10Y-09		7578190	73617020	28	42975										
MAP2K4	0	genome.wustl.edu	37	chr17	12011227	12011228	+	Splice_Site	INS	-	-	T													0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	aggcaaaatcactttagcagINStaagtacctggtctttaaat							TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	12011227	12011228	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site_ins	c.666+1_666+1	e6+1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	222	0	0	73	11	13.1	-	-	-	T	12011228	-	T	12011227	8	5	446	1	0	1	1	0	0	0	1	0	9310	1043	36	0	652	0	MAP2K4	17	12011227	Splice_Site	INS	-	TCGA-B6-A0RH-01A-21D-A10Y-09	4433037	12011227	69183983	29	42976										
RNF135	0	genome.wustl.edu	37	chr17	29325839	29325839	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	atgttcccaggccctgtcttCtggaaagcattactgggaag	11	10	2	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	29325839	29325839	C	T	SNP	RNF135	ENST00000328381	human	ensembl	69_37n	1	known	missense	c.929	p.S310F	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF135	HGNC	ENSG00000181481	69	0	0	49	33	40.24	-	-	-	T	29325839	C	T	29325839	3	4	446	1	0	0	0	0	1	0	0	0	13526	913	32	2	1016	2	RNF135	17	29325839	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	17314612	29325839	51869371	30	42977										
KRT28	0	genome.wustl.edu	37	chr17	38954517	38954517	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ttctttttgagatatgtcatCtcctcactcagagactcata	5	10	6	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	38954517	38954517	C	G	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.660	p.E220D	0.999	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	196	0	0	207	39	15.85	-	-	-	G	38954517	C	G	38954517	3	3	446	1	0	0	0	0	1	0	0	0	8518	912	32	2	758	2	KRT28	17	38954517	Missense_Mutation	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09	9628678	38954517	42240693	31	42978										
BAHCC1	0	genome.wustl.edu	37	chr17	79422327	79422327	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	gcctgggtctgctgtgtgcgGagctgcgaggaggcagtggg	21	8	1	0			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	17	79422327	79422327	G	C	SNP	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	missense	c.4480	p.E1494Q	0.986	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	15	0	0	19	12	38.71	-	-	-	C	79422327	G	C	79422327	3	2	446	1	0	0	0	0	1	0	0	0	1300	1175	41	2	4369	2	BAHCC1	17	79422327	Missense_Mutation	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09	40467810	79422327	1772883	32	42979										
WDR7	0	genome.wustl.edu	37	chr18	54385232	54385232	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	catctgctctgtagccagtgAccactcagtaggacttctaa	8	12	4	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	18	54385232	54385232	A	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	missense	c.1616	p.D539V	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	213	1	0.47	35	48	57.83	-	-	-	T	54385232	A	T	54385232	3	4	446	1	0	0	0	0	1	0	0	0	17417	275	10	5	1662	5	WDR7	18	54385232	Missense_Mutation	SNP	A	TCGA-B6-A0RH-01A-21D-A10Y-09		54385232	23692016	33	42980										
C19orf40	0	genome.wustl.edu	37	chr19	33464469	33464469	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ggcttgttcgggttagaaatGtaagtattaggctgggtgct	15	4	0	1			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	19	33464469	33464469	G	A	SNP	C19orf40	ENST00000588258	human	ensembl	69_37n	1	known	splice_site	c.243+1	e2+1	1.000	-	-	-	no_errors	C19orf40	HGNC	ENSG00000131944	83	0	0	76	23	23.23	-	-	-	A	33464469	G	A	33464469	5	1	446	1	0	0	0	0	0	0	1	0	1941	1391	48	4	250	4	C19orf40	19	33464469	Splice_Site	SNP	G	TCGA-B6-A0RH-01A-21D-A10Y-09		33464469	25664514	34	42981										
VPREB1	0	genome.wustl.edu	37	chr22	22599458	22599458	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0408598563221837	2.57633775159548	2.70515463917526	2.5360824742268	0.131934731934732	0.62934362934363	5	ctgaggaacgaccatgacatCggtgtgtacagcgtctactg	12	10	1	2			TCGA-B6-A0RH-01A-21D-A10Y-09	TCGA-B6-A0RH-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e59b987-b4f0-4078-af2d-482c299103b6	6041e087-636b-4f3c-96d9-202e0d102899	22	22599458	22599458	C	T	SNP	VPREB1	ENST00000403807	human	ensembl	69_37n	1	known	silent	c.147	p.I49	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VPREB1	HGNC	ENSG00000169575	93	0	0	59	24	28.92	-	-	-	T	22599458	C	T	22599458	2	4	446	1	0	0	0	0	0	0	0	1	17283	874	31	1		1	VPREB1	22	22599458	Silent	SNP	C	TCGA-B6-A0RH-01A-21D-A10Y-09		22599458	28705108	35	42982										
SPEN	0	genome.wustl.edu	37	chr1	16263797	16263797	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	cagcaagatgcctcaagtgtCccaggaggcaaaggggaccc	13	12	1	1			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	16263797	16263797	C	G	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.10166	p.S3389C	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	55	0	0	38	6	13.64	-	-	-	G	16263797	C	G	16263797	3	3	447	1	0	0	0	0	1	0	0	0	15129	855	30	2	10212	2	SPEN	1	16263797	Missense_Mutation	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09		16263797	232986824	1	42983										
PKN2	0	genome.wustl.edu	37	chr1	89299057	89299057	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	cacctattctgactccacctCgagaaccaaggatactttcg	6	14	1	2			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	89299057	89299057	C	T	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	nonsense	c.2881	p.R961*	1.000	pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	154	0	0	104	40	27.78	-	-	-	T	89299057	C	T	89299057	4	4	447	1	0	0	0	0	0	1	0	0	12054	876	31	1	2967	1	PKN2	1	89299057	Nonsense_Mutation	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09	73035260	89299057	159951564	2	42984										
WNT2B	0	genome.wustl.edu	37	chr1	113057615	113057615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	ttcagtgggcgagggtgcccGagaatggatccgagagtgtc	17	8	1	2			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	113057615	113057615	G	A	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	missense	c.302	p.R101Q	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	52	0	0	22	33	60	-	-	-	A	113057615	G	A	113057615	3	1	447	1	0	0	0	0	1	0	0	0	17484	1058	37	1	441	1	WNT2B	1	113057615	Missense_Mutation	SNP	G	TCGA-B6-A0RI-01A-11W-A071-09	23758558	113057615	136193006	3	42985										
IL21	0	genome.wustl.edu	37	chr4	123536991	123536991	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	aagctgaccactcacagtttGtctgaaagataaacaatttg	7	8	2	3			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	123536991	123536991	G	T	SNP	IL21	ENST00000264497	human	ensembl	69_37n	-1	known	missense	c.206	p.T69K	0.772	pfam_Interleukin_15-like	pfam_Interleukin_15-like	-	no_errors	IL21	HGNC	ENSG00000138684	201	0	0	132	64	32.65	-	-	-	T	123536991	G	T	123536991	3	4	447	1	0	0	0	0	1	0	0	0	7724	1391	48	4	294	4	IL21	4	123536991	Missense_Mutation	SNP	G	TCGA-B6-A0RI-01A-11W-A071-09		123536991	67617285	4	42986										
LRBA	0	genome.wustl.edu	37	chr4	151392804	151392804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	gtgttgagaaacatcaagtaCtcaaaattagatatctctct	6	7	4	2			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	151392804	151392804	C	T	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.2597	p.S866N	0.992	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	190	0	0	177	76	30.04	-	-	-	T	151392804	C	T	151392804	3	4	447	1	0	0	0	0	1	0	0	0	8997	564	20	4	1979	4	LRBA	4	151392804	Missense_Mutation	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09	27855813	151392804	39761472	5	42987										
FTMT	0	genome.wustl.edu	37	chr5	121187814	121187814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	cgccgccccctggccgcagcCgcctcctcccgggaccctac	10	24	0	0			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	5	121187814	121187814	C	T	SNP	FTMT	ENST00000321339	human	ensembl	69_37n	1	known	silent	c.156	p.A52	0.000	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	21	0	0	15	6	28.57	-	-	-	T	121187814	C	T	121187814	2	4	447	1	0	0	0	0	0	0	0	1	6134	639	23	1		1	FTMT	5	121187814	Silent	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09		121187814	59727446	6	42988										
SLC26A4	0	genome.wustl.edu	37	chr7	107342369	107342370	+	Frame_Shift_Ins	INS	-	-	A													0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	gatatcccaaccaaggaaatINSagagattcaagtggattgga							TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	7	107342369	107342370	-	A	INS	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	frame_shift_ins	c.1901_1902	p.E635fs	1.000:0.980	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	125	0	0	102	51	33.33	-	-	-	A	107342370	-	A	107342369	7	5	447	1	0	1	1	0	0	0	0	0	14608	1406	49	0	1963	0	SLC26A4	7	107342369	Frame_Shift_Ins	INS	-	TCGA-B6-A0RI-01A-11W-A071-09		107342369	51796294	7	42989										
FAM49B	0	genome.wustl.edu	37	chr8	130891697	130891697	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	tgcatgtcaaaactttaagaAgattccccatgttaaggtac	7	8	1	2			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	8	130891697	130891697	A	C	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.11	p.L4R	1.000	NULL	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	229	0	0	127	88	40.93	-	-	-	C	130891697	A	C	130891697	3	2	447	1	0	0	0	0	1	0	0	0	5622	72	3	5	1003	5	FAM49B	8	130891697	Missense_Mutation	SNP	A	TCGA-B6-A0RI-01A-11W-A071-09		130891697	15472325	8	42990										
ABCA1	0	genome.wustl.edu	37	chr9	107550711	107550711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	caggtgcccacagtaccttgCcaacttctttctctgggact	8	14	2	0			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	9	107550711	107550711	C	G	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.6065	p.G2022A	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	291	0	0	203	109	34.94	-	-	-	G	107550711	C	G	107550711	3	3	447	1	0	0	0	0	1	0	0	0	28	739	26	4	744	4	ABCA1	9	107550711	Missense_Mutation	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09		107550711	33662720	9	42991										
OR56B4	0	genome.wustl.edu	37	chr11	6129525	6129526	+	In_Frame_Ins	INS	-	-	ACT													0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	tatactggctgcccagagacINSactactgttccaggaatgaa							TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	11	6129525	6129526	-	ACT	INS	OR56B4	ENST00000316529	human	ensembl	69_37n	1	known	in_frame_ins	c.517_518	p.175in_frame_insY	0.000:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56B4	HGNC	ENSG00000180919	341	0	0	289	98	25.32	-	-	-	ACT	6129526	-	ACT	6129525	7	5	447	1	0	1	1	0	0	0	0	0	11211	478	17	0	519	0	OR56B4	11	6129525	In_Frame_Ins	INS	-	TCGA-B6-A0RI-01A-11W-A071-09		6129525	128876991	10	42992										
UTP20	0	genome.wustl.edu	37	chr12	101723202	101723202	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	ctgtatgacagcaaccgtatCacacatccttgaccaacgag	7	13	1	2			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	101723202	101723202	C	T	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.3392	p.S1131L	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	138	0	0	72	42	36.84	-	-	-	T	101723202	C	T	101723202	3	4	447	1	0	0	0	0	1	0	0	0	17196	838	29	2	3498	2	UTP20	12	101723202	Missense_Mutation	SNP	C	TCGA-B6-A0RI-01A-11W-A071-09		101723202	32128693	11	42993										
TBX3	0	genome.wustl.edu	37	chr12	115117430	115117431	+	Frame_Shift_Ins	INS	-	-	T													0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	caatgtggaaccggggctggINStatttgtgcatggagttcaa							TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	115117430	115117431	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.744_743	p.Y248fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	293	0	0	106	55	34.16	-	-	-	T	115117431	-	T	115117430	7	5	447	1	0	1	1	0	0	0	0	0	15754	1256	44	0	1507	0	TBX3	12	115117430	Frame_Shift_Ins	INS	-	TCGA-B6-A0RI-01A-11W-A071-09	13394228	115117430	18734465	12	42994										
SPG20	0	genome.wustl.edu	37	chr13	36886475	36886475	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	ccttgaacactacttgctgcTacaaccatagcaccatccag	5	15	0	1			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	13	36886475	36886475	T	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	silent	c.1623	p.V541	0.998	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	485	0	0	326	153	31.87	-	-	-	G	36886475	T	G	36886475	2	3	447	1	0	0	0	0	0	0	0	1	15133	1509	53	5		5	SPG20	13	36886475	Silent	SNP	T	TCGA-B6-A0RI-01A-11W-A071-09		36886475	78283403	13	42995										
CTCF	0	genome.wustl.edu	37	chr16	67645518	67645518	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	acaaaaattaaaaagaaaggTaaaacgagtttatccatagt	6	4	0	1			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	67645518	67645518	T	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	splice_site	c.781+2	e1+2	1.000	-	-	-	no_errors	CTCF	HGNC	ENSG00000102974	155	0	0	26	60	69.77	-	-	-	G	67645518	T	G	67645518	5	3	447	1	0	0	0	0	0	0	1	0	4032	1652	57	5	785	5	CTCF	16	67645518	Splice_Site	SNP	T	TCGA-B6-A0RI-01A-11W-A071-09		67645518	22709235	14	42996										
ZC3H18	0	genome.wustl.edu	37	chr16	88690436	88690436	+	Frame_Shift_Del	DEL	A	A	-													0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	atagaccttccatcagaaccAagggagagccggccccgccg							TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	88690436	88690436	A	-	DEL	ZC3H18	ENST00000301011	human	ensembl	69_37n	1	known	frame_shift_del	c.1864	p.K622fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545	55	0	0	11	2	15.38	-	-	-	-	88690436	A	-	88690436	7	5	447	1	0	1	0	1	0	0	0	0	17664	131	5	0	1902	0	ZC3H18	16	88690436	Frame_Shift_Del	DEL	A	TCGA-B6-A0RI-01A-11W-A071-09	21044918	88690436	1664317	15	42997										
RHBDF2	0	genome.wustl.edu	37	chr17	74473336	74473337	+	Frame_Shift_Ins	INS	-	-	G													0.0625	1	0.904872247913239	1.07881773399015	0	1.51034482758621	1	1	0	ggaagtagctggcagagagtINSgggggggactcaaagacatc							TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	17	74473336	74473337	-	G	INS	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	frame_shift_ins	c.933_932	p.L312fs	0.581:1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	20	0	0	14	4	22.22	-	-	-	G	74473337	-	G	74473336	7	5	447	1	0	1	1	0	0	0	0	0	13404	1683	59	0	1685	0	RHBDF2	17	74473336	Frame_Shift_Ins	INS	-	TCGA-B6-A0RI-01A-11W-A071-09		74473336	6721874	16	42998										
PANK4	0	genome.wustl.edu	37	chr1	2453186	2453186	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gtggtcgaaagaccgcacctTggcgactttgtgctgtaccg	13	11	0	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	2453186	2453186	T	C	SNP	PANK4	ENST00000378466	human	ensembl	69_37n	-1	known	missense	c.178	p.K60E	0.987	pfam_Type_II_PanK,pirsf_PanK_long,tigrfam_Type_II_PanK	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	118	0	0	86	56	39.44	-	-	-	C	2453186	T	C	2453186	3	2	448	1	0	0	0	0	1	0	0	0	11492	1821	63	5	2215	5	PANK4	1	2453186	Missense_Mutation	SNP	T	TCGA-B6-A0RN-01A-12D-A099-09		2453186	246797435	1	42999										
JUN	0	genome.wustl.edu	37	chr1	59248498	59248498	+	Frame_Shift_Del	DEL	T	T	-													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tgatgtgcccgttgctggacTggattatcaggcgctccagc							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	59248498	59248498	T	-	DEL	JUN	ENST00000371222	human	ensembl	69_37n	-1	known	frame_shift_del	c.245	p.Q82fs	1.000	pfam_JNK	pfam_JNK,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUN	HGNC	ENSG00000177606	51	0	0	38	19	33.33	-	-	-	-	59248498	T	-	59248498	7	5	448	1	0	1	0	1	0	0	0	0	8023	1580	55	0	754	0	JUN	1	59248498	Frame_Shift_Del	DEL	T	TCGA-B6-A0RN-01A-12D-A099-09	56795312	59248498	190002123	2	43000										
GBP1	0	genome.wustl.edu	37	chr1	89521803	89521805	+	In_Frame_Del	DEL	CTT	CTT	-													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	cgaataaattcccgccttcaCttcttcttctagaggactga							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	89521803	89521805	CTT	-	DEL	GBP1	ENST00000370473	human	ensembl	69_37n	-1	known	in_frame_del	c.1264_1262	p.E421in_frame_del	0.012:0.000:0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP1	HGNC	ENSG00000117228	266	0	0	294	92	23.77	-	-	-	-	89521805	CTT	-	89521803	7	5	448	1	0	1	0	1	0	0	0	0	6323	565	20	0	530	0	GBP1	1	89521803	In_Frame_Del	DEL	CTT	TCGA-B6-A0RN-01A-12D-A099-09	30273305	89521803	159728818	3	43001										
HFM1	0	genome.wustl.edu	37	chr1	91727807	91727807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	agagttcttacctgaaatcaActtcctttttacattcactg	4	10	3	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	91727807	91727807	A	G	SNP	HFM1	ENST00000370425	human	ensembl	69_37n	-1	known	missense	c.4229	p.V1410A	0.832	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669	107	0	0	66	35	34.65	-	-	-	G	91727807	A	G	91727807	3	3	448	1	0	0	0	0	1	0	0	0	7134	43	2	5	86	5	HFM1	1	91727807	Missense_Mutation	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09	2206004	91727807	157522814	4	43002										
EVI5	0	genome.wustl.edu	37	chr1	93131496	93131496	+	Frame_Shift_Del	DEL	T	T	-													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ataagtagtcacttacttacTttttctaatgtctcgatgcg							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	93131496	93131496	T	-	DEL	EVI5	ENST00000543509	human	ensembl	69_37n	-1	known	frame_shift_del	c.1344	p.E449fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208	398	0	0	276	164	36.77	-	-	-	-	93131496	T	-	93131496	7	5	448	1	0	1	0	1	0	0	0	0	5326	1623	56	0	1120	0	EVI5	1	93131496	Frame_Shift_Del	DEL	T	TCGA-B6-A0RN-01A-12D-A099-09	1403689	93131496	156119125	5	43003										
ASPM	0	genome.wustl.edu	37	chr1	197059075	197059075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	actaccttagatacattaagCaagacttgcacagcatatct	5	10	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	197059075	197059075	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.9969	p.L3323	1.000	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	74	0	0	77	56	42.11	-	-	-	T	197059075	C	T	197059075	2	4	448	1	0	0	0	0	0	0	0	1	1060	709	25	4		4	ASPM	1	197059075	Silent	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	103927579	197059075	52191546	6	43004										
CEP170	0	genome.wustl.edu	37	chr1	243289876	243289876	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tgaaacagcagcaggatgaaGagccctagcttctggttggc	13	9	1	3			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	1	243289876	243289876	G	A	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.4630	p.L1544F	0.998	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	70	0	0	90	22	19.64	-	-	-	A	243289876	G	A	243289876	3	1	448	1	0	0	0	0	1	0	0	0	3279	942	33	2	128	2	CEP170	1	243289876	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	46230801	243289876	5960745	7	43005										
MLPH	0	genome.wustl.edu	37	chr2	238461047	238461047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ctgacacagagaaaccccaaCgcgaggaaaggaatggccag	12	11	0	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	2	238461047	238461047	C	T	SNP	MLPH	ENST00000432475	human	ensembl	69_37n	1	known	missense	c.538	p.R180C	0.857	NULL	pfam_Myelin-assoc_OBP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLPH	HGNC	ENSG00000115648	71	0	0	53	32	37.65	-	-	-	T	238461047	C	T	238461047	3	4	448	1	0	0	0	0	1	0	0	0	9704	535	19	1	1797	1	MLPH	2	238461047	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		238461047	4738326	8	43006										
FBXW12	0	genome.wustl.edu	37	chr3	48416853	48416853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tttccttctagcatttgagaCggagttggcttatctctcag	9	9	3	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	3	48416853	48416853	C	T	SNP	FBXW12	ENST00000296438	human	ensembl	69_37n	1	known	missense	c.296	p.T99M	0.000	superfamily_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXW12	HGNC	ENSG00000164049	191	0	0	227	55	19.5	-	-	-	T	48416853	C	T	48416853	3	4	448	1	0	0	0	0	1	0	0	0	5811	536	19	1	347	1	FBXW12	3	48416853	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		48416853	149605577	9	43007										
WWTR1	0	genome.wustl.edu	37	chr3	149243909	149243909	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tgctccctcgaatgatatggCcctctgcaaagcaaaagatg	9	11	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	3	149243909	149243909	C	A	SNP	WWTR1	ENST00000360632	human	ensembl	69_37n	-1	known	silent	c.909	p.G303	0.994	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWTR1	HGNC	ENSG00000018408	103	0	0	88	30	25.42	-	-	-	A	149243909	C	A	149243909	2	1	448	1	0	0	0	0	0	0	0	1	17514	726	26	4		4	WWTR1	3	149243909	Silent	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	100827056	149243909	48778521	10	43008										
TBL1XR1	0	genome.wustl.edu	37	chr3	176765098	176765098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gagcttttaccttgtctactCcagcacttaggatgaaattt	7	9	1	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	3	176765098	176765098	C	A	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	missense	c.854	p.G285V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	77	0	0	52	44	45.83	-	-	-	A	176765098	C	A	176765098	3	1	448	1	0	0	0	0	1	0	0	0	15735	855	30	2	722	2	TBL1XR1	3	176765098	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	27521189	176765098	21257332	11	43009										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	131	0	0	75	61	44.85	-	-	-	G	178952085	A	G	178952085	3	3	448	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09	2186987	178952085	19070345	12	43010										
SLC2A9	0	genome.wustl.edu	37	chr4	9836553	9836553	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gcaaagttggagagccagttGacggtgcctgcaatgatgaa	14	7	0	4			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	4	9836553	9836553	G	A	SNP	SLC2A9	ENST00000264784	human	ensembl	69_37n	-1	known	silent	c.1371	p.V457	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667	38	0	0	28	24	46.15	-	-	-	A	9836553	G	A	9836553	2	1	448	1	0	0	0	0	0	0	0	1	14641	1277	45	2		2	SLC2A9	4	9836553	Silent	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09		9836553	181317723	13	43011										
NEK1	0	genome.wustl.edu	37	chr4	170321765	170321765	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	aaatggttaaagacactatcGcattcacattcactagcaat	5	9	2	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	4	170321765	170321765	G	A	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	silent	c.3621	p.C1207	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	167	0	0	139	97	41.1	-	-	-	A	170321765	G	A	170321765	2	1	448	1	0	0	0	0	0	0	0	1	10393	1079	38	1		1	NEK1	4	170321765	Silent	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	160485212	170321765	20832511	14	43012										
PCDHGC3	0	genome.wustl.edu	37	chr5	140857180	140857180	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tctttctttctcttggagcaAggagctgaaaccgggctagt	11	9	3	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	5	140857180	140857180	A	G	SNP	PCDHGC3	ENST00000308177	human	ensembl	69_37n	1	known	silent	c.1497	p.Q499	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184	92	0	0	62	39	38.61	-	-	-	G	140857180	A	G	140857180	2	3	448	1	0	0	0	0	0	0	0	1	11642	69	3	5		5	PCDHGC3	5	140857180	Silent	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09		140857180	40058080	15	43013										
GABRG2	0	genome.wustl.edu	37	chr5	161522529	161522529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	acgttaattcacacagacatGtatgtgaatagcattggtcc	8	8	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	5	161522529	161522529	G	A	SNP	GABRG2	ENST00000356592	human	ensembl	69_37n	1	known	missense	c.288	p.M96I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	325	0	0	296	135	31.32	-	-	-	A	161522529	G	A	161522529	3	1	448	1	0	0	0	0	1	0	0	0	6221	1377	48	4	298	4	GABRG2	5	161522529	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	20665349	161522529	19392731	16	43014										
BTNL9	0	genome.wustl.edu	37	chr5	180486582	180486582	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ccgcgtcgcgctcaccctgcGcgtgcccccgcggcgcctgg	14	21	1	0			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	5	180486582	180486582	G	A	SNP	BTNL9	ENST00000376842	human	ensembl	69_37n	1	known	missense	c.1331	p.R444H	0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL9	HGNC	ENSG00000165810	16	0	0	17	7	29.17	-	-	-	A	180486582	G	A	180486582	3	1	448	1	0	0	0	0	1	0	0	0	1577	1087	38	1	1366	1	BTNL9	5	180486582	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	18964053	180486582	428678	17	43015										
PCOLCE	0	genome.wustl.edu	37	chr7	100203382	100203382	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gtcagcgtgttcaacggagcCgtgagcgacgactcccggag	15	12	2	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	7	100203382	100203382	C	G	SNP	PCOLCE	ENST00000223061	human	ensembl	69_37n	1	known	silent	c.672	p.A224	0.033	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Netrin_module_non-TIMP,superfamily_CUB,superfamily_TIMP-like_OB-fold,smart_CUB,smart_Netrin_module_non-TIMP,pfscan_CUB,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333	29	0	0	18	10	35.71	-	-	-	G	100203382	C	G	100203382	2	3	448	1	0	0	0	0	0	0	0	1	11667	639	23	3		3	PCOLCE	7	100203382	Silent	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		100203382	58935281	18	43016										
XKR6	0	genome.wustl.edu	37	chr8	10755750	10755750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tcctcctgttgttccgttacGgctctggtgggcgtaacctg	12	12	1	0			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	8	10755750	10755750	G	A	SNP	XKR6	ENST00000382461	human	ensembl	69_37n	-1	putative	missense	c.968	p.P323L	1.000	NULL	pfam_Transport_prot_XK	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	XKR6	HGNC	ENSG00000171044	23	0	0	15	6	28.57	-	-	-	A	10755750	G	A	10755750	3	1	448	1	0	0	0	0	1	0	0	0	17532	1103	39	1	291	1	XKR6	8	10755750	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09		10755750	135608272	19	43017										
RP1	0	genome.wustl.edu	37	chr8	55533670	55533670	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	aagagcggagacccccaattCggcggggtcagggtggtggt	18	9	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	8	55533670	55533670	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	silent	c.144	p.F48	0.008	superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	140	0	0	114	66	36.67	-	-	-	T	55533670	C	T	55533670	2	4	448	1	0	0	0	0	0	0	0	1	13618	883	31	1		1	RP1	8	55533670	Silent	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	44777920	55533670	90830352	20	43018										
IL33	0	genome.wustl.edu	37	chr9	6252949	6252949	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ttgctttggaggatgaaagtTatgagatatatgttgaagac	12	2	0	4			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	9	6252949	6252949	T	G	SNP	IL33	ENST00000381434	human	ensembl	69_37n	1	known	missense	c.427	p.Y143D	0.078	NULL	NULL	-	no_errors	IL33	HGNC	ENSG00000137033	159	0	0	93	77	45.29	-	-	-	G	6252949	T	G	6252949	3	3	448	1	0	0	0	0	1	0	0	0	7747	1754	61	5	441	5	IL33	9	6252949	Missense_Mutation	SNP	T	TCGA-B6-A0RN-01A-12D-A099-09		6252949	134960482	21	43019										
PTCH1	0	genome.wustl.edu	37	chr9	98215818	98215818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	cactcccagcagagtggacaCggcgccatccaggacgggtg	14	14	0	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	9	98215818	98215818	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3391	p.V1131M	0.997	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	31	0	0	24	14	36.84	-	-	-	T	98215818	C	T	98215818	3	4	448	1	0	0	0	0	1	0	0	0	12810	536	19	1	968	1	PTCH1	9	98215818	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	91962869	98215818	42997613	22	43020										
USP54	0	genome.wustl.edu	37	chr10	75276172	75276172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ccaggcggtatcctgctgccCccatccagaacagccagctt	9	17	0	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	10	75276172	75276172	C	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.4012	p.G1338R	0.998	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	147	0	0	88	59	40.14	-	-	-	G	75276172	C	G	75276172	3	3	448	1	0	0	0	0	1	0	0	0	17182	623	22	4	1062	4	USP54	10	75276172	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		75276172	60258575	23	43021										
CASC1	0	genome.wustl.edu	37	chr12	25307302	25307302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	cttcctcaaaagtctcatttGttttctctttccacaaacta	2	12	3	0			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	12	25307302	25307302	G	T	SNP	CASC1	ENST00000395987	human	ensembl	69_37n	-1	known	missense	c.389	p.T130K	0.791	NULL	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307	316	0	0	245	132	35.01	-	-	-	T	25307302	G	T	25307302	3	4	448	1	0	0	0	0	1	0	0	0	2685	1377	48	4	1823	4	CASC1	12	25307302	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09		25307302	108544593	24	43022										
THBS1	0	genome.wustl.edu	37	chr15	39883768	39883768	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tggaccagagagacactgatAtggatggggttggagatcag	16	5	1	4			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	15	39883768	39883768	A	G	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	missense	c.2476	p.M826V	0.937	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	195	0	0	139	98	41.18	-	-	-	G	39883768	A	G	39883768	3	3	448	1	0	0	0	0	1	0	0	0	15948	449	16	5	2534	5	THBS1	15	39883768	Missense_Mutation	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09		39883768	62647624	25	43023										
NEIL1	0	genome.wustl.edu	37	chr15	75647320	75647320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	cccaggccactgcagaccccGgaaggtcaaggctgacatcc	11	16	1	2			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	15	75647320	75647320	G	A	SNP	NEIL1	ENST00000355059	human	ensembl	69_37n	1	known	missense	c.1118	p.R373Q	0.000	NULL	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398	64	0	0	35	35	50	-	-	-	A	75647320	G	A	75647320	3	1	448	1	0	0	0	0	1	0	0	0	10390	1116	39	1	1152	1	NEIL1	15	75647320	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	35763552	75647320	26884072	26	43024										
ZNF592	0	genome.wustl.edu	37	chr15	85341673	85341673	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ctgagtgcccactcttgttcGtgcagaagccggagttgatg	13	10	1	3			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	15	85341673	85341673	G	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.2704	p.V902L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	66	0	0	41	30	42.25	-	-	-	T	85341673	G	T	85341673	3	4	448	1	0	0	0	0	1	0	0	0	18118	1145	40	3	2718	3	ZNF592	15	85341673	Missense_Mutation	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09	9694353	85341673	17189719	27	43025										
CBFB	0	genome.wustl.edu	37	chr16	67100598	67100598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	gtcttaggtatatttgaaggCtcccatgattctgaatggag	11	6	2	3			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	16	67100598	67100598	C	T	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.296	p.A99V	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	421	0	0	112	197	63.55	-	-	-	T	67100598	C	T	67100598	3	4	448	1	0	0	0	0	1	0	0	0	2724	797	28	4	310	4	CBFB	16	67100598	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		67100598	23254155	28	43026										
SCN4A	0	genome.wustl.edu	37	chr17	62018350	62018350	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	agcccctccttctcaggggcGtcatccccgctgccgtcgtg	11	18	2	0			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	17	62018350	62018350	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.5292	p.D1764	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	85	0	0	56	44	44	-	-	-	A	62018350	G	A	62018350	2	1	448	1	0	0	0	0	0	0	0	1	14008	1136	40	1		1	SCN4A	17	62018350	Silent	SNP	G	TCGA-B6-A0RN-01A-12D-A099-09		62018350	19176860	29	43027										
PNPLA6	0	genome.wustl.edu	37	chr19	7605077	7605077	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ccactcttcctggagctctgCcgccacatggtcttccagcg	9	17	3	0			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	19	7605077	7605077	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	69_37n	1	known	silent	c.624	p.C208	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	40	0	0	27	10	27.03	-	-	-	T	7605077	C	T	7605077	2	4	448	1	0	0	0	0	0	0	0	1	12243	747	26	4		4	PNPLA6	19	7605077	Silent	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09		7605077	51523906	30	43028										
LYPD4	0	genome.wustl.edu	37	chr19	42342215	42342215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ggttgttgcagagataagacCggcagacgcgactgtaggag	16	7	0	3			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	19	42342215	42342215	C	T	SNP	LYPD4	ENST00000330743	human	ensembl	69_37n	-1	known	missense	c.332	p.R111Q	0.824	NULL	pfam_LY6_UPAR	-	no_errors	LYPD4	HGNC	ENSG00000183103	116	0	0	62	63	50.4	-	-	-	T	42342215	C	T	42342215	3	4	448	1	0	0	0	0	1	0	0	0	9179	652	23	1	416	1	LYPD4	19	42342215	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	34737138	42342215	16786768	31	43029										
TMEM145	0	genome.wustl.edu	37	chr19	42820840	42820840	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tgctcttctcctccagcttcCtcatcttcctgctgatgctt	5	16	4	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	19	42820840	42820840	C	A	SNP	TMEM145	ENST00000301204	human	ensembl	69_37n	1	known	missense	c.754	p.L252I	1.000	pfam_Rhodopsin-like_GPCR_TM_domain	pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	TMEM145	HGNC	ENSG00000167619	93	0	0	63	41	39.42	-	-	-	A	42820840	C	A	42820840	3	1	448	1	0	0	0	0	1	0	0	0	16154	681	24	4	792	4	TMEM145	19	42820840	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	478625	42820840	16308143	32	43030										
MYH9	0	genome.wustl.edu	37	chr22	36697633	36697634	+	In_Frame_Ins	INS	-	-	GAG													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ttctccgcagccagctgcttINSctctctgaccttcaccagct							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	22	36697633	36697634	-	GAG	INS	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	in_frame_ins	c.2578_2577	p.859in_frame_insL	1.000:1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	169	0	0	50	53	51.46	-	-	-	GAG	36697634	-	GAG	36697633	7	5	448	1	0	1	1	0	0	0	0	0	10114	1792	62	0	3388	0	MYH9	22	36697633	In_Frame_Ins	INS	-	TCGA-B6-A0RN-01A-12D-A099-09		36697633	14606933	33	43031	349	3								
MYH9	0	genome.wustl.edu	37	chr22	36697634	36697634	+	Missense_Mutation	SNP	C	C	A													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ttctccgcagccagctgcttCtctctgaccttcaccagctc							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	22	36697634	36697634	C	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.2577	p.E859D	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	174	0	0	46	54	53.47	-	-	-	A	36697634	C	A	36697634	3	1	448	1	0	0	0	0	1	0	0	0	10114	912	32	2	3389	2	MYH9	22	36697634	Missense_Mutation	SNP	C	TCGA-B6-A0RN-01A-12D-A099-09	1	36697634	14606932	34	43032	349	3								
MYH9	0	genome.wustl.edu	37	chr22	36697635	36697635	+	Missense_Mutation	SNP	T	T	A													0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	tctccgcagccagctgcttcTctctgaccttcaccagctcc							TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	22	36697635	36697635	T	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.2576	p.E859V	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	173	0	0	46	55	54.46	-	-	-	A	36697635	T	A	36697635	3	1	448	1	0	0	0	0	1	0	0	0	10114	1551	54	5	3390	5	MYH9	22	36697635	Missense_Mutation	SNP	T	TCGA-B6-A0RN-01A-12D-A099-09	1	36697635	14606931	35	43033	349	3								
CCNB3	0	genome.wustl.edu	37	chrX	50094618	50094618	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ttttgcagggtcttctttgaAgtcgccaaaatccctgcctt	8	11	2	1			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	X	50094618	50094618	A	T	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.4104	p.E1368D	1.000	pfam_Cyclin_C,superfamily_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	290	0	0	227	167	42.39	-	-	-	T	50094618	A	T	50094618	3	4	448	1	0	0	0	0	1	0	0	0	2943	69	3	5	4146	5	CCNB3	23	50094618	Missense_Mutation	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09		50094618	105175942	36	43034										
GSPT2	0	genome.wustl.edu	37	chrX	51488514	51488514	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.98084598061592	0.757159221076747	0	0.85180412371134	0.333333333333333	0.930327025915261	0	ccatctgcctcgagacgttcAaagattttcctcagatgggt	9	11	3	3			TCGA-B6-A0RN-01A-12D-A099-09	TCGA-B6-A0RN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbbcb493-2937-4a7b-8454-0abbbb379927	5465e36a-97f7-4408-81c1-9f8e836c1279	X	51488514	51488514	A	G	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	missense	c.1792	p.K598E	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	127	1	0.78	87	43	33.08	-	-	-	G	51488514	A	G	51488514	3	3	448	1	0	0	0	0	1	0	0	0	6878	131	5	5	1794	5	GSPT2	23	51488514	Missense_Mutation	SNP	A	TCGA-B6-A0RN-01A-12D-A099-09	1393896	51488514	103782046	37	43035										
SPEN	0	genome.wustl.edu	37	chr1	16257012	16257012	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	tgaaagactctctagttcttTagaaaggaacaaattttact	6	6	2	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	1	16257012	16257012	T	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.4277	p.L1426*	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	62	0	0	37	86	69.92	-	-	-	A	16257012	T	A	16257012	4	1	449	1	0	0	0	0	0	1	0	0	15129	1764	61	5	4319	5	SPEN	1	16257012	Nonsense_Mutation	SNP	T	TCGA-B6-A0RO-01A-22D-A099-09		16257012	232993609	1	43036										
FAIM3	0	genome.wustl.edu	37	chr1	207086340	207086341	+	Frame_Shift_Ins	INS	-	-	T													0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	aaatagggcagatgaaaccaINSttttggagtctcaggcattg							TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	1	207086340	207086341	-	T	INS	FAIM3	ENST00000367091	human	ensembl	69_37n	-1	known	frame_shift_ins	c.421_420	p.W140fs	0.272:0.014	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	FAIM3	HGNC	ENSG00000162894	102	0	0	90	80	47.06	-	-	-	T	207086341	-	T	207086340	7	5	449	1	0	1	1	0	0	0	0	0	5417	217	8	0	775	0	FAIM3	1	207086340	Frame_Shift_Ins	INS	-	TCGA-B6-A0RO-01A-22D-A099-09	190829328	207086340	42164281	2	43037										
OR2C3	0	genome.wustl.edu	37	chr1	247695646	247695646	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	aagaagtacataggtgtgtgGaggtgcacatctgtatggga	15	4	1	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	1	247695646	247695646	G	A	SNP	OR2C3	ENST00000366487	human	ensembl	69_37n	-1	known	silent	c.168	p.L56	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2C3	HGNC	ENSG00000196242	76	0	0	104	109	51.17	-	-	-	A	247695646	G	A	247695646	2	1	449	1	0	0	0	0	0	0	0	1	11066	1161	41	2		2	OR2C3	1	247695646	Silent	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09	40609306	247695646	1554975	3	43038										
TTN	0	genome.wustl.edu	37	chr2	179585182	179585182	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gctttgcagtgatattccccGacatcggaggcttcaagatt	10	10	1	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	2	179585182	179585182	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.19575	p.V6525	0.069	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	170	0	0	160	52	24.41	-	-	-	A	179585182	G	A	179585182	2	1	449	1	0	0	0	0	0	0	0	1	16832	1045	37	1		1	TTN	2	179585182	Silent	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09		179585182	63614191	4	43039										
UBE2E3	0	genome.wustl.edu	37	chr2	181925537	181925537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ccttttgacagactgcaaccCtggtaagcaaatctttatta	6	10	1	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	2	181925537	181925537	C	T	SNP	UBE2E3	ENST00000392415	human	ensembl	69_37n	1	known	missense	c.524	p.P175L	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2E3	HGNC	ENSG00000170035	147	0	0	164	41	20	-	-	-	T	181925537	C	T	181925537	3	4	449	1	0	0	0	0	1	0	0	0	16951	681	24	4	538	4	UBE2E3	2	181925537	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	2340355	181925537	61273836	5	43040										
P2RY1	0	genome.wustl.edu	37	chr3	152554206	152554206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	cacctcagacgagtacctgcGaagttatttcatctacagca	7	12	3	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	3	152554206	152554206	G	A	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	missense	c.635	p.R212Q	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	118	0	0	136	34	20	-	-	-	A	152554206	G	A	152554206	3	1	449	1	0	0	0	0	1	0	0	0	11419	1058	37	1	637	1	P2RY1	3	152554206	Missense_Mutation	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09		152554206	45468224	6	43041										
PIK3CA	0	genome.wustl.edu	37	chr3	178936074	178936074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	agcaatttctacacgagatcCtctctctgaaatcactgagc	6	12	4	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	3	178936074	178936074	C	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1616	p.P539R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	126	0	0	98	75	43.1	-	-	-	G	178936074	C	G	178936074	3	3	449	1	0	0	0	0	1	0	0	0	11987	681	24	4	1650	4	PIK3CA	3	178936074	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	26381868	178936074	19086356	7	43042										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	100	0	0	60	25	29.41	-	-	-	G	178952085	A	G	178952085	3	3	449	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0RO-01A-22D-A099-09	16011	178952085	19070345	8	43043										
LGI2	0	genome.wustl.edu	37	chr4	25005663	25005663	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ccatttataaactgtggacaGaccagcctttgagctgtctg	9	10	1	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	4	25005663	25005663	G	A	SNP	LGI2	ENST00000382114	human	ensembl	69_37n	-1	known	silent	c.1048	p.L350	0.488	pfam_EPTP,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	61	0	0	135	37	21.51	-	-	-	A	25005663	G	A	25005663	2	1	449	1	0	0	0	0	0	0	0	1	8807	933	33	2		2	LGI2	4	25005663	Silent	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09		25005663	166148613	9	43044										
LSM11	0	genome.wustl.edu	37	chr5	157178496	157178496	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	tcaagggacttcggggcgtcTgtacaggcttccttgttgca	13	10	2	0			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	5	157178496	157178496	T	C	SNP	LSM11	ENST00000286307	human	ensembl	69_37n	1	known	missense	c.547	p.C183R	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM11	HGNC	ENSG00000155858	60	0	0	73	48	39.34	-	-	-	C	157178496	T	C	157178496	3	2	449	1	0	0	0	0	1	0	0	0	9118	1580	55	5	553	5	LSM11	5	157178496	Missense_Mutation	SNP	T	TCGA-B6-A0RO-01A-22D-A099-09		157178496	23736764	10	43045										
RARS	0	genome.wustl.edu	37	chr5	167927622	167927622	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	aagaagaggtttgatactgaGgaggaatttaagaagcgagc	14	3	0	5			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	5	167927622	167927622	G	C	SNP	RARS	ENST00000231572	human	ensembl	69_37n	1	known	missense	c.849	p.E283D	0.969	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS	HGNC	ENSG00000113643	144	0	0	113	63	35.59	-	-	-	C	167927622	G	C	167927622	3	2	449	1	0	0	0	0	1	0	0	0	13141	991	35	4	879	4	RARS	5	167927622	Missense_Mutation	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09	10749126	167927622	12987638	11	43046										
RHAG	0	genome.wustl.edu	37	chr6	49580246	49580246	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gggtggcattctgaatgtgaAcctgtgtgagcggcagaaac	15	7	1	4			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	6	49580246	49580246	A	G	SNP	RHAG	ENST00000371175	human	ensembl	69_37n	-1	known	missense	c.809	p.V270A	1.000	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077	32	0	0	35	25	41.67	-	-	-	G	49580246	A	G	49580246	3	3	449	1	0	0	0	0	1	0	0	0	13399	57	2	5	440	5	RHAG	6	49580246	Missense_Mutation	SNP	A	TCGA-B6-A0RO-01A-22D-A099-09		49580246	121534821	12	43047										
GIMAP8	0	genome.wustl.edu	37	chr7	150171600	150171634	+	Frame_Shift_Del	DEL	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	-													0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	tcatccagaagtgtaaaaacAgatatagtgccttcaactac							TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	7	150171600	150171634	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	-	DEL	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	frame_shift_del	c.1183_1217	p.Y396fs	0.000:0.004:0.000:0.016:0.012:0.003:0.000:0.000:0.000:0.000:0.001:0.464:0.880:0.952:0.961:0.967:0.968:0.973:0.969:0.901:0.861:0.133:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	38	0	0	97	13	11.82	-	-	-	-	150171634	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	-	150171600	7	5	449	1	0	1	0	1	0	0	0	0	6437	180	7	0	1193	0	GIMAP8	7	150171600	Frame_Shift_Del	DEL	AGATATAGTGCCTTCAACTACCGGGCAACAGGAGA	TCGA-B6-A0RO-01A-22D-A099-09		150171600	8967063	13	43048										
GRHL2	0	genome.wustl.edu	37	chr8	102570699	102570699	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	atttgagtggaggagaaaacCgagtgcaagtcctaaagact	12	6	0	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	8	102570699	102570699	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	nonsense	c.337	p.R113*	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	56	0	0	99	38	27.74	-	-	-	T	102570699	C	T	102570699	4	4	449	1	0	0	0	0	0	1	0	0	6815	644	23	1	351	1	GRHL2	8	102570699	Nonsense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09		102570699	43793323	14	43049										
CNTLN	0	genome.wustl.edu	37	chr9	17486986	17486986	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gtttttattttttttcttcaGgaaattgaaaaaacaaaaat	4	3	2	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	9	17486986	17486986	G	A	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	splice_site	c.4042-1	e25-1	1.000	-	-	-	no_errors	CNTLN	HGNC	ENSG00000044459	125	0	0	88	26	22.81	-	-	-	A	17486986	G	A	17486986	5	1	449	1	0	0	0	0	0	0	1	0	3669	1014	35	4	4169	4	CNTLN	9	17486986	Splice_Site	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09		17486986	123726445	15	43050										
ZNF658	0	genome.wustl.edu	37	chr9	40775035	40775035	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	atgtgatcaactttaaaataCcctaaaatgagaaaaattga	5	5	1	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	9	40775035	40775035	C	T	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	silent	c.240	p.G80	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	25	0	0	16	3	15.79	-	-	-	T	40775035	C	T	40775035	2	4	449	1	0	0	0	0	0	0	0	1	18165	521	18	4		4	ZNF658	9	40775035	Silent	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	23288049	40775035	100438396	16	43051										
HSDL2	0	genome.wustl.edu	37	chr9	115167969	115167969	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gagatgaacagcagatcagtGctgcagtggagaaagccatc	13	8	1	4			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	9	115167969	115167969	G	C	SNP	HSDL2	ENST00000398805	human	ensembl	69_37n	1	known	missense	c.247	p.A83P	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	132	0	0	85	26	23.42	-	-	-	C	115167969	G	C	115167969	3	2	449	1	0	0	0	0	1	0	0	0	7445	1319	46	4	257	4	HSDL2	9	115167969	Missense_Mutation	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09	74392934	115167969	26045462	17	43052										
RNLS	0	genome.wustl.edu	37	chr10	90332770	90332772	+	In_Frame_Del	DEL	TCT	TCT	-													0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	tggatacttcccatttgtcaTctcttaggttgatctgtgtc							TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	10	90332770	90332772	TCT	-	DEL	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	in_frame_del	c.416_414	p.RD138in_frame_delS	0.035:0.010:0.007	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	114	0	0	176	33	15.64	-	-	-	-	90332772	TCT	-	90332770	7	5	449	1	0	1	0	1	0	0	0	0	13591	1435	50	0	704	0	RNLS	10	90332770	In_Frame_Del	DEL	TCT	TCGA-B6-A0RO-01A-22D-A099-09		90332770	45201977	18	43053										
SORCS3	0	genome.wustl.edu	37	chr10	106974227	106974227	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	cggattgtgtccaacaactgCacagatgggctaagggagaa	13	8	0	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	10	106974227	106974227	C	T	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	silent	c.2403	p.C801	1.000	superfamily_PKD_dom,smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	49	0	0	83	18	17.82	-	-	-	T	106974227	C	T	106974227	2	4	449	1	0	0	0	0	0	0	0	1	15021	718	25	4		4	SORCS3	10	106974227	Silent	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	16641457	106974227	28560520	19	43054										
OR4A15	0	genome.wustl.edu	37	chr11	55136222	55136222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ctgtatcttcttgtatgcaaGgcccaattctacttttccca	5	12	3	0			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	11	55136222	55136222	G	T	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.863	p.R288M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	301	0	0	218	49	18.35	-	-	-	T	55136222	G	T	55136222	3	4	449	1	0	0	0	0	1	0	0	0	11113	1000	35	4	865	4	OR4A15	11	55136222	Missense_Mutation	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09		55136222	79870294	20	43055										
OR4D10	0	genome.wustl.edu	37	chr11	59245446	59245446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	acactttctactgtgatgtcCaccgggtcctcaaactggcc	8	14	2	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	11	59245446	59245446	C	T	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.544	p.H182Y	0.587	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	65	0	0	59	50	45.87	-	-	-	T	59245446	C	T	59245446	3	4	449	1	0	0	0	0	1	0	0	0	11127	594	21	4	546	4	OR4D10	11	59245446	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	4109224	59245446	75761070	21	43056										
DDB1	0	genome.wustl.edu	37	chr11	61093120	61093120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	caatagccaggtatttgtcaCcattgtgataggtgattgac	10	7	1	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	11	61093120	61093120	C	T	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.725	p.G242D	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	62	0	0	101	65	39.16	-	-	-	T	61093120	C	T	61093120	3	4	449	1	0	0	0	0	1	0	0	0	4354	507	18	4	2785	4	DDB1	11	61093120	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09	1847674	61093120	73913396	22	43057										
FOLR4	0	genome.wustl.edu	37	chr11	94040778	94040788	+	Frame_Shift_Del	DEL	CTCTTCGCCAG	CTCTTCGCCAG	-													0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ccaatgtggccgtggcccgcCtcttcgccagctctgcccca							TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	CTCTTCGCCAG	CTCTTCGCCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	11	94040778	94040788	CTCTTCGCCAG	-	DEL	FOLR4	ENST00000440961	human	ensembl	69_37n	1	novel	frame_shift_del	c.652_662	p.F219fs	0.003:0.002:0.014:0.018:0.012:0.007:0.288:0.315:0.009:0.006:0.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560	26	0	0	78	9	10.34	-	-	-	-	94040788	CTCTTCGCCAG	-	94040778	7	5	449	1	0	1	0	1	0	0	0	0	6030	681	24	0	666	0	FOLR4	11	94040778	Frame_Shift_Del	DEL	CTCTTCGCCAG	TCGA-B6-A0RO-01A-22D-A099-09	32947658	94040778	40965738	23	43058										
EP400	0	genome.wustl.edu	37	chr12	132498069	132498069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ttctgatcgactcgccgctgCacaataccttcctggagctc	8	15	1	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	12	132498069	132498069	C	T	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.3754	p.H1252Y	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	30	0	0	60	31	34.07	-	-	-	T	132498069	C	T	132498069	3	4	449	1	0	0	0	0	1	0	0	0	5186	710	25	4	3709	4	EP400	12	132498069	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09		132498069	1353826	24	43059										
SERPINE3	0	genome.wustl.edu	37	chr13	51922387	51922387	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	caggccatcaggtgggggtgCtggagcttccttacctggga	16	10	1	0			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	13	51922387	51922387	C	A	SNP	SERPINE3	ENST00000521255	human	ensembl	69_37n	1	known	missense	c.739	p.L247M	0.996	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309	28	0	0	134	28	17.28	-	-	-	A	51922387	C	A	51922387	3	1	449	1	0	0	0	0	1	0	0	0	14201	796	28	4	753	4	SERPINE3	13	51922387	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09		51922387	63247491	25	43060										
DCUN1D2	0	genome.wustl.edu	37	chr13	114138226	114138226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gcatggactccctgtggagcGagtctgggttttggaagaag	16	7	1	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	13	114138226	114138226	G	A	SNP	DCUN1D2	ENST00000478244	human	ensembl	69_37n	-1	known	missense	c.149	p.S50L	0.975	NULL	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D2	HGNC	ENSG00000150401	26	0	0	61	11	15.28	-	-	-	A	114138226	G	A	114138226	3	1	449	1	0	0	0	0	1	0	0	0	4345	1059	37	1	654	1	DCUN1D2	13	114138226	Missense_Mutation	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09	62215839	114138226	1031652	26	43061										
DCAF5	0	genome.wustl.edu	37	chr14	69520662	69520662	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	ttttgaggccactgtggccaTgaacagccctgctactatct	9	12	1	2			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	14	69520662	69520662	T	A	SNP	DCAF5	ENST00000341516	human	ensembl	69_37n	-1	known	missense	c.2741	p.H914L	0.992	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	40	0	0	124	44	26.19	-	-	-	A	69520662	T	A	69520662	3	1	449	1	0	0	0	0	1	0	0	0	4305	1464	51	5	91	5	DCAF5	14	69520662	Missense_Mutation	SNP	T	TCGA-B6-A0RO-01A-22D-A099-09		69520662	37828878	27	43062										
NCOR1	0	genome.wustl.edu	37	chr17	15983302	15983302	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	gtgatagagccccgtagggaTggaatgctctccactgaaat	12	9	1	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	17	15983302	15983302	T	A	SNP	NCOR1	ENST00000395849	human	ensembl	69_37n	-1	novel	missense	c.20	p.H7L	0.525	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCOR1	HGNC	ENSG00000141027	131	0	0	159	40	20.1	-	-	-	A	15983302	T	A	15983302	3	1	449	1	0	0	0	0	1	0	0	0	10307	1451	51	5	3929	5	NCOR1	17	15983302	Missense_Mutation	SNP	T	TCGA-B6-A0RO-01A-22D-A099-09		15983302	65211908	28	43063										
DMKN	0	genome.wustl.edu	37	chr19	35999142	35999142	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	aactccctgtcctctgaagcCctgcagggtgagacaaagaa	10	12	1	3			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	19	35999142	35999142	C	T	SNP	DMKN	ENST00000419602	human	ensembl	69_37n	-1	known	missense	c.856	p.G286S	0.003	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249	73	0	0	118	43	26.71	-	-	-	T	35999142	C	T	35999142	3	4	449	1	0	0	0	0	1	0	0	0	4618	637	22	4	683	4	DMKN	19	35999142	Missense_Mutation	SNP	C	TCGA-B6-A0RO-01A-22D-A099-09		35999142	23129841	29	43064										
FCGBP	0	genome.wustl.edu	37	chr19	40368619	40368619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.323643410852713	0	0.388372093023256	1	1	0	cctggggctcgccagctgccGccccagatgggtatggaggg	17	13	0	1			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05e12ff8-023b-4ac1-b35d-f97b42e3da7a	87703b5d-774a-4a75-9bbf-cb58f58adcc4	19	40368619	40368619	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12729	p.G4243	0.496	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	46	0	0	241	32	11.72	-	-	-	A	40368619	G	A	40368619	2	1	449	1	0	0	0	0	0	0	0	1	5824	1074	38	1		1	FCGBP	19	40368619	Silent	SNP	G	TCGA-B6-A0RO-01A-22D-A099-09	4369477	40368619	18760364	30	43065										
HDAC1	0	genome.wustl.edu	37	chr1	32768220	32768220	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgtcactctctcttcttcAggggatgttggaaattacta	9	9	5	0			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	1	32768220	32768220	A	G	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	splice_site	c.50-2	e2-2	1.000	-	-	-	no_errors	HDAC1	HGNC	ENSG00000116478	103	0	0	28	20	40.82	-	-	-	G	32768220	A	G	32768220	5	3	450	1	0	0	0	0	0	0	1	0	7055	202	7	5	54	5	HDAC1	1	32768220	Splice_Site	SNP	A	TCGA-B6-A0RP-01A-21D-A099-09		32768220	216482401	1	43066										
TTN	0	genome.wustl.edu	37	chr2	179435537	179435537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	atccatacttattcgtggtgGatctacctcatctctagctg	7	11	3	0			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	2	179435537	179435537	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.67618	p.P22540S	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	320	0	0	113	14	11.02	-	-	-	A	179435537	G	A	179435537	3	1	450	1	0	0	0	0	1	0	0	0	16832	1174	41	2	32805	2	TTN	2	179435537	Missense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09		179435537	63763836	2	43067										
CASP8	0	genome.wustl.edu	37	chr2	202141634	202141634	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaattttgcaaaagcacggGagaaagtgcccaaacttcac	8	10	1	1			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	2	202141634	202141634	G	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	nonsense	c.922	p.E308*	0.123	pfam_Pept_C14_cat,superfamily_DEATH-like,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	149	0	0	61	24	27.91	-	-	-	T	202141634	G	T	202141634	4	4	450	1	0	0	0	0	0	1	0	0	2702	1175	41	2	1048	2	CASP8	2	202141634	Nonsense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09	22706097	202141634	41057739	3	43068										
COL6A5	0	genome.wustl.edu	37	chr3	130159662	130159662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttaaagccatttttatactcGgtcaggcgtaagttattatt	7	6	1	0			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	3	130159662	130159662	G	A	SNP	COL6A5	ENST00000512836	human	ensembl	69_37n	1	putative	missense	c.1234	p.G412S	0.017	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL6A5	HGNC	ENSG00000172752	162	0	0	36	63	63.64	-	-	-	A	130159662	G	A	130159662	3	1	450	1	0	0	0	0	1	0	0	0	3732	1103	39	1	6614	1	COL6A5	3	130159662	Missense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09		130159662	67862768	4	43069										
ACOX3	0	genome.wustl.edu	37	chr4	8401327	8401327	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcgggggtgacgtctcccaTccggttcagaaggctctggc	14	13	3	2			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	4	8401327	8401327	T	A	SNP	ACOX3	ENST00000356406	human	ensembl	69_37n	-1	known	missense	c.829	p.M277L	0.005	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008	21	0	0	50	31	38.27	-	-	-	A	8401327	T	A	8401327	3	1	450	1	0	0	0	0	1	0	0	0	160	1435	50	5	1317	5	ACOX3	4	8401327	Missense_Mutation	SNP	T	TCGA-B6-A0RP-01A-21D-A099-09		8401327	182752949	5	43070										
MLL3	0	genome.wustl.edu	37	chr7	151845739	151845739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttcaagtggacccacagatCcaagtcaaggttgagtagcc	11	10	2	2			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	7	151845739	151845739	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.13444	p.D4482Y	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	76	0	0	42	19	31.15	-	-	-	A	151845739	C	A	151845739	3	1	450	1	0	0	0	0	1	0	0	0	9693	855	30	2	1494	2	MLL3	7	151845739	Missense_Mutation	SNP	C	TCGA-B6-A0RP-01A-21D-A099-09		151845739	7292924	6	43071										
DOCK8	0	genome.wustl.edu	37	chr9	377199	377199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgtgcagcccatggtcatcGctggccagacaggtatgaac	12	13	1	2			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	9	377199	377199	G	T	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.2428	p.A810S	0.999	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	8	0	0	14	11	44	-	-	-	T	377199	G	T	377199	3	4	450	1	0	0	0	0	1	0	0	0	4728	1087	38	3	2506	3	DOCK8	9	377199	Missense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09		377199	140836232	7	43072										
C9orf84	0	genome.wustl.edu	37	chr9	114518627	114518627	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttcaaaaagcttttccttTtcatctacatagtttattat	2	8	3	0			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	9	114518627	114518627	T	C	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	silent	c.648	p.E216	0.994	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	300	0	0	54	7	11.48	-	-	-	C	114518627	T	C	114518627	2	2	450	1	0	0	0	0	0	0	0	1	2525	1838	64	5		5	C9orf84	9	114518627	Silent	SNP	T	TCGA-B6-A0RP-01A-21D-A099-09	114141428	114518627	26694804	8	43073										
PRKRIR	0	genome.wustl.edu	37	chr11	76062566	76062566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttgaatatcaagtttggttGccaaatttgtggcttcctca	8	7	2	1			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	11	76062566	76062566	G	A	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1628	p.A543V	1.000	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	49	0	0	20	9	31.03	-	-	-	A	76062566	G	A	76062566	3	1	450	1	0	0	0	0	1	0	0	0	12607	1319	46	4	661	4	PRKRIR	11	76062566	Missense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09		76062566	58943950	9	43074										
PIP4K2C	0	genome.wustl.edu	37	chr12	57989795	57989795	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cattgctgacatgcatagcaAcctctccaactatcaccagg	6	14	2	1			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	12	57989795	57989795	A	G	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	missense	c.494	p.N165S	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	125	0	0	100	23	18.55	-	-	-	G	57989795	A	G	57989795	3	3	450	1	0	0	0	0	1	0	0	0	12012	43	2	5	508	5	PIP4K2C	12	57989795	Missense_Mutation	SNP	A	TCGA-B6-A0RP-01A-21D-A099-09		57989795	75862100	10	43075										
ZFC3H1	0	genome.wustl.edu	37	chr12	72008334	72008334	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctattatgaaattcatagTtggaccagtaatcagcactg	7	9	2	1			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	12	72008334	72008334	T	A	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	missense	c.5507	p.N1836I	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	151	0	0	60	16	21.05	-	-	-	A	72008334	T	A	72008334	3	1	450	1	0	0	0	0	1	0	0	0	17729	1725	60	5	486	5	ZFC3H1	12	72008334	Missense_Mutation	SNP	T	TCGA-B6-A0RP-01A-21D-A099-09	14018539	72008334	61843561	11	43076										
FREM2	0	genome.wustl.edu	37	chr13	39435627	39435627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccgttctcagctaaattgCgctacacaggccctgaggat	10	12	1	1			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	13	39435627	39435627	C	T	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.7579	p.R2527C	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	98	0	0	31	21	40.38	-	-	-	T	39435627	C	T	39435627	3	4	450	1	0	0	0	0	1	0	0	0	6094	768	27	1	7637	1	FREM2	13	39435627	Missense_Mutation	SNP	C	TCGA-B6-A0RP-01A-21D-A099-09		39435627	75734251	12	43077										
CES1	0	genome.wustl.edu	37	chr16	55857523	55857523	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccaccacgttttcatgggCagcaagggccagcccatcat	9	15	2	0			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	16	55857523	55857523	C	A	SNP	CES1	ENST00000360526	human	ensembl	69_37n	-1	known	missense	c.478	p.A160S	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848	128	0	0	110	18	13.95	-	-	-	A	55857523	C	A	55857523	3	1	450	1	0	0	0	0	1	0	0	0	3298	710	25	4	1272	4	CES1	16	55857523	Missense_Mutation	SNP	C	TCGA-B6-A0RP-01A-21D-A099-09		55857523	34497230	13	43078										
SRCIN1	0	genome.wustl.edu	37	chr17	36719585	36719585	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctccagctcgtagaagacGttgcgagcctcgtctttgat	10	12	1	3			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	17	36719585	36719585	G	C	SNP	SRCIN1	ENST00000264659	human	ensembl	69_37n	-1	known	missense	c.714	p.N238K	1.000	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373	10	0	0	36	25	40.32	-	-	-	C	36719585	G	C	36719585	3	2	450	1	0	0	0	0	1	0	0	0	15227	1136	40	3	2897	3	SRCIN1	17	36719585	Missense_Mutation	SNP	G	TCGA-B6-A0RP-01A-21D-A099-09		36719585	44475625	14	43079										
MUC16	0	genome.wustl.edu	37	chr19	9056515	9056515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagagtagcatccccagggcCtgactctgtcctagagaatg	11	12	1	3			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	19	9056515	9056515	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.30931	p.G10311S	0.022	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	71	0	0	68	24	26.09	-	-	-	T	9056515	C	T	9056515	3	4	450	1	0	0	0	0	1	0	0	0	10045	681	24	4	12920	4	MUC16	19	9056515	Missense_Mutation	SNP	C	TCGA-B6-A0RP-01A-21D-A099-09		9056515	50072468	15	43080										
TNNI3	0	genome.wustl.edu	37	chr19	55666131	55666131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgtgatgttcttggtgactTttgcctctatgtcgtatctc	9	10	3	2			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	19	55666131	55666131	T	C	SNP	TNNI3	ENST00000344887	human	ensembl	69_37n	-1	known	missense	c.350	p.K117R	1.000	pfam_Troponin	pfam_Troponin,pfam_Troponin-I_N	-	no_errors	TNNI3	HGNC	ENSG00000129991	129	1	0.77	90	41	31.06	-	-	-	C	55666131	T	C	55666131	3	2	450	1	0	0	0	0	1	0	0	0	16423	1841	64	5	294	5	TNNI3	19	55666131	Missense_Mutation	SNP	T	TCGA-B6-A0RP-01A-21D-A099-09	46609616	55666131	3462852	16	43081										
KCND1	0	genome.wustl.edu	37	chrX	48823411	48823411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagatgcggctaaagttggaCacaatgactggcacaggcag	13	8	0	2			TCGA-B6-A0RP-01A-21D-A099-09	TCGA-B6-A0RP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	efbdb449-b885-44bb-9054-9e97d6603cad	d989e1d9-e13d-4767-b907-b450b745a00e	X	48823411	48823411	C	T	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	silent	c.1224	p.V408	0.758	pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	53	0	0	55	57	50.89	-	-	-	T	48823411	C	T	48823411	2	4	450	1	0	0	0	0	0	0	0	1	8072	465	17	4		4	KCND1	23	48823411	Silent	SNP	C	TCGA-B6-A0RP-01A-21D-A099-09		48823411	106447149	17	43082										
DEPDC1	0	genome.wustl.edu	37	chr1	68954121	68954121	+	Frame_Shift_Del	DEL	T	T	-													0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	gccatgttgtacattatataTtggggaattacttgttttgg							TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	68954121	68954121	T	-	DEL	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	frame_shift_del	c.657	p.Q219fs	0.702	NULL	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	377	0	0	558	64	10.24	-	-	-	-	68954121	T	-	68954121	7	5	451	1	0	1	0	1	0	0	0	0	4475	1490	52	0	1810	0	DEPDC1	1	68954121	Frame_Shift_Del	DEL	T	TCGA-B6-A0RQ-01A-11D-A10Y-09		68954121	180296500	1	43083										
OBSCN	0	genome.wustl.edu	37	chr1	228559663	228559663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	catgccctcctggctccttcCctccaggatcttgcaaagag	8	16	1	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	228559663	228559663	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.21184	p.P7062S	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	66	0	0	51	9	15	-	-	-	T	228559663	C	T	228559663	3	4	451	1	0	0	0	0	1	0	0	0	10885	623	22	4	22764	4	OBSCN	1	228559663	Missense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09	159605542	228559663	20690958	2	43084										
KCNF1	0	genome.wustl.edu	37	chr2	11053551	11053551	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	ctgctcatgtacctggcagtGggtatcttcgtcttctctgc	10	12	4	0			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	2	11053551	11053551	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	silent	c.999	p.V333	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	137	0	0	89	10	10.1	-	-	-	A	11053551	G	A	11053551	2	1	451	1	0	0	0	0	0	0	0	1	8080	1335	47	4		4	KCNF1	2	11053551	Silent	SNP	G	TCGA-B6-A0RQ-01A-11D-A10Y-09		11053551	232145822	3	43085										
PIK3CA	0	genome.wustl.edu	37	chr3	178936083	178936083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	tacacgagatcctctctctgAaatcactgagcaggagaaag	9	10	3	4			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	3	178936083	178936083	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1625	p.E542G	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	125	0	0	136	19	12.26	-	-	-	G	178936083	A	G	178936083	3	3	451	1	0	0	0	0	1	0	0	0	11987	246	9	5	1659	5	PIK3CA	3	178936083	Missense_Mutation	SNP	A	TCGA-B6-A0RQ-01A-11D-A10Y-09		178936083	19086347	4	43086										
CCNI2	0	genome.wustl.edu	37	chr5	132084048	132084048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	cttcctagcaggatgaaatcTgcgacgccttcgaggaagtc	11	11	1	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	5	132084048	132084048	T	C	SNP	CCNI2	ENST00000378731	human	ensembl	69_37n	1	novel	missense	c.439	p.C147R	0.036	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNI2	HGNC	ENSG00000205089	113	0	0	126	17	11.81	-	-	-	C	132084048	T	C	132084048	3	2	451	1	0	0	0	0	1	0	0	0	2956	1580	55	5	445	5	CCNI2	5	132084048	Missense_Mutation	SNP	T	TCGA-B6-A0RQ-01A-11D-A10Y-09		132084048	48831212	5	43087										
RIPK1	0	genome.wustl.edu	37	chr6	3077012	3077012	+	RNA	DEL	G	G	-													0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	ttacagggtacagctctgccGgggggggaaaaagtggtacc							TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	6	3077012	3077012	G	-	DEL	RIPK1	ENST00000490396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	36	0	0	46	6	11.54	-	-	-	-	3077012	G	-	3077012	6	5	451	0	1	1	0	1	0	0	0	0	13466	1131	39	0		0	RIPK1	6	3077012	RNA	DEL	G	TCGA-B6-A0RQ-01A-11D-A10Y-09		3077012	168038055	6	43088										
PNMA2	0	genome.wustl.edu	37	chr8	26365666	26365666	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	ctttccgccagccaccttttCttttctgcctctgttactgg	6	15	3	0			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	8	26365666	26365666	C	G	SNP	PNMA2	ENST00000522362	human	ensembl	69_37n	-1	known	missense	c.606	p.K202N	1.000	NULL	pfam_Retrotrans_gag	-	no_errors	PNMA2	HGNC	ENSG00000240694	54	0	0	59	8	11.94	-	-	-	G	26365666	C	G	26365666	3	3	451	1	0	0	0	0	1	0	0	0	12228	912	32	2	492	2	PNMA2	8	26365666	Missense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09		26365666	119998356	7	43089										
MGMT	0	genome.wustl.edu	37	chr10	131565093	131565093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	cacagagtggtctgcagcagCggagccgtgggcaactactc	14	12	1	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	10	131565093	131565093	C	T	SNP	MGMT	ENST00000306010	human	ensembl	69_37n	1	known	silent	c.549	p.S183	0.984	pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430	58	0	0	55	11	16.42	-	-	-	T	131565093	C	T	131565093	2	4	451	1	0	0	0	0	0	0	0	1	9628	767	27	1		1	MGMT	10	131565093	Silent	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09		131565093	3969654	8	43090										
TAGLN	0	genome.wustl.edu	37	chr11	117075033	117075033	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	aacagaggggcctcccaggcCggcatgacaggctacggacg	15	13	0	2			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	11	117075033	117075033	C	A	SNP	TAGLN	ENST00000529622	human	ensembl	69_37n	1	putative	missense	c.413	p.P138Q	0.934	pfam_Calponin_repeat,pfscan_Calponin_repeat,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_Transgelin,prints_SM22_calponin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAGLN	HGNC	ENSG00000149591	84	0	0	116	16	11.94	-	-	-	A	117075033	C	A	117075033	3	1	451	1	0	0	0	0	1	0	0	0	15630	639	23	3	578	3	TAGLN	11	117075033	Missense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09		117075033	17931483	9	43091										
MYH7	0	genome.wustl.edu	37	chr14	23899017	23899017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	tggctccgcctgctcctcccGctgcttcagcttgaacttca	8	17	2	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	14	23899017	23899017	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.1105	p.R369W	0.995	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	241	0	0	209	27	11.34	-	-	-	A	23899017	G	A	23899017	3	1	451	1	0	0	0	0	1	0	0	0	10111	1086	38	1	4818	1	MYH7	14	23899017	Missense_Mutation	SNP	G	TCGA-B6-A0RQ-01A-11D-A10Y-09		23899017	83450523	10	43092										
TSC2	0	genome.wustl.edu	37	chr16	2134569	2134569	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	gggtcccttgccttccagctCcccccgctcgcccagtggcc	10	21	0	0			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	2134569	2134569	C	G	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	missense	c.4346	p.S1449C	0.007	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	19	0	0	27	7	20.59	-	-	-	G	2134569	C	G	2134569	3	3	451	1	0	0	0	0	1	0	0	0	16702	855	30	2	4476	2	TSC2	16	2134569	Missense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09		2134569	88220184	11	43093										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	42	0	0	34	4	10.53	-	-	-	T	68772218	C	T	68772218	4	4	451	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09	66637649	68772218	21582535	12	43094										
PITPNM3	0	genome.wustl.edu	37	chr17	6380354	6380354	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	acagggaggggctaccttgaGaggaaggcatggtgctgggt	19	6	0	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	17	6380354	6380354	G	A	SNP	PITPNM3	ENST00000262483	human	ensembl	69_37n	-1	known	silent	c.1080	p.L360	0.992	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	115	0	0	122	16	11.59	-	-	-	A	6380354	G	A	6380354	2	1	451	1	0	0	0	0	0	0	0	1	12026	929	33	2		2	PITPNM3	17	6380354	Silent	SNP	G	TCGA-B6-A0RQ-01A-11D-A10Y-09		6380354	74814856	13	43095										
KIR3DL2	0	genome.wustl.edu	37	chr19	55363677	55363677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	cctacagatgtcggggttcaCgcccacactccctcactggg	10	16	2	1			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	19	55363677	55363677	C	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	1	known	missense	c.295	p.R99C	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	58	0	0	74	23	23.71	-	-	-	T	55363677	C	T	55363677	3	4	451	1	0	0	0	0	1	0	0	0	8374	536	19	1	305	1	KIR3DL2	19	55363677	Missense_Mutation	SNP	C	TCGA-B6-A0RQ-01A-11D-A10Y-09		55363677	3765306	14	43096										
PPP1R16B	0	genome.wustl.edu	37	chr20	37546989	37546989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.572066951992368	2.05	5.125	1.28125	1	1	0	tggcctatggcaaccctggcGtggccgacgccaccccgccc	12	19	0	0			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	20	37546989	37546989	G	A	SNP	PPP1R16B	ENST00000299824	human	ensembl	69_37n	1	known	missense	c.1384	p.V462M	0.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445	73	0	0	64	11	14.67	-	-	-	A	37546989	G	A	37546989	3	1	451	1	0	0	0	0	1	0	0	0	12443	1145	40	1	1422	1	PPP1R16B	20	37546989	Missense_Mutation	SNP	G	TCGA-B6-A0RQ-01A-11D-A10Y-09		37546989	25478531	15	43097										
TMEM57	0	genome.wustl.edu	37	chr1	25785067	25785067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	acaatattctacaacctgtaGactctaaaatacaagagatt	4	8	2	2			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	1	25785067	25785067	G	C	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.838	p.D280H	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	142	0	0	63	7	10	-	-	-	C	25785067	G	C	25785067	3	2	452	1	0	0	0	0	1	0	0	0	16279	942	33	2	860	2	TMEM57	1	25785067	Missense_Mutation	SNP	G	TCGA-B6-A0RT-01A-21D-A099-09		25785067	223465554	1	43098										
WNT9A	0	genome.wustl.edu	37	chr1	228113112	228113112	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	tcccggcggcacatgcgccgCtgcttccgctccagcttcag	11	18	1	0			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	1	228113112	228113112	C	A	SNP	WNT9A	ENST00000272164	human	ensembl	69_37n	-1	known	missense	c.204	p.Q68H	0.999	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt14	-	no_errors	WNT9A	HGNC	ENSG00000143816	10	0	0	16	4	20	-	-	-	A	228113112	C	A	228113112	3	1	452	1	0	0	0	0	1	0	0	0	17495	796	28	4	905	4	WNT9A	1	228113112	Missense_Mutation	SNP	C	TCGA-B6-A0RT-01A-21D-A099-09	202328045	228113112	21137509	2	43099										
TARBP1	0	genome.wustl.edu	37	chr1	234565071	234565071	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	gattcagaggaagtcagaagCtggtaggaaaaaaaaaaata	11	3	2	2			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	1	234565071	234565071	C	A	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	splice_site	c.2872-1	e17-1	1.000	-	-	-	no_errors	TARBP1	HGNC	ENSG00000059588	77	0	0	25	5	16.67	-	-	-	A	234565071	C	A	234565071	5	1	452	1	0	0	0	0	0	0	1	0	15647	811	28	4	2050	4	TARBP1	1	234565071	Splice_Site	SNP	C	TCGA-B6-A0RT-01A-21D-A099-09	6451959	234565071	14685550	3	43100										
GYLTL1B	0	genome.wustl.edu	37	chr11	45945056	45945056	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	gccatcgtgtgtgcggggcaTaactccagccgagacgtcat	13	12	1	1			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	11	45945056	45945056	T	G	SNP	GYLTL1B	ENST00000325468	human	ensembl	69_37n	1	known	missense	c.318	p.H106Q	0.886	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905	64	0	0	74	11	12.94	-	-	-	G	45945056	T	G	45945056	3	3	452	1	0	0	0	0	1	0	0	0	6958	1403	49	5	324	5	GYLTL1B	11	45945056	Missense_Mutation	SNP	T	TCGA-B6-A0RT-01A-21D-A099-09		45945056	89061460	4	43101										
C11orf85	0	genome.wustl.edu	37	chr11	64715283	64715283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	cccaagaggactgtcacttaTtggtttccctacaataggaa	8	10	1	1			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	11	64715283	64715283	T	C	SNP	C11orf85	ENST00000301896	human	ensembl	69_37n	-1	known	missense	c.358	p.I120V	0.000	NULL	NULL	-	no_errors	C11orf85	HGNC	ENSG00000168070	88	0	0	44	5	10.2	-	-	-	C	64715283	T	C	64715283	3	2	452	1	0	0	0	0	1	0	0	0	1679	1493	52	5	308	5	C11orf85	11	64715283	Missense_Mutation	SNP	T	TCGA-B6-A0RT-01A-21D-A099-09	18770227	64715283	70291233	5	43102										
COL4A2	0	genome.wustl.edu	37	chr13	111132707	111132707	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	gccctggatttaaaggaattGatggaatgcctgggaccccc	12	10	0	1			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	13	111132707	111132707	G	C	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.2728	p.D910H	0.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	98	0	0	62	7	10.14	-	-	-	C	111132707	G	C	111132707	3	2	452	1	0	0	0	0	1	0	0	0	3720	1290	45	2	2846	2	COL4A2	13	111132707	Missense_Mutation	SNP	G	TCGA-B6-A0RT-01A-21D-A099-09		111132707	4037171	6	43103										
KCNH6	0	genome.wustl.edu	37	chr17	61619707	61619707	+	Frame_Shift_Del	DEL	G	G	-													0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	cgacctgcacaagatccagcGggcagatctgctggaggtgc							TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	17	61619707	61619707	G	-	DEL	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	frame_shift_del	c.2060	p.A688fs	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	77	0	0	90	18	16.67	-	-	-	-	61619707	G	-	61619707	7	5	452	1	0	1	0	1	0	0	0	0	8090	1116	39	0	2094	0	KCNH6	17	61619707	Frame_Shift_Del	DEL	G	TCGA-B6-A0RT-01A-21D-A099-09		61619707	19575503	7	43104										
NLRP13	0	genome.wustl.edu	37	chr19	56423854	56423854	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	tgagtgattgactggagatcGtaatacctcaccttcggctg	11	9	1	4			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	19	56423854	56423854	G	C	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	nonsense	c.1329	p.Y443*	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	79	0	0	82	10	10.87	-	-	-	C	56423854	G	C	56423854	4	2	452	1	0	0	0	0	0	1	0	0	10547	1140	40	3	1828	3	NLRP13	19	56423854	Nonsense_Mutation	SNP	G	TCGA-B6-A0RT-01A-21D-A099-09		56423854	2705129	8	43105										
HSPA12B	0	genome.wustl.edu	37	chr20	3721471	3721471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	cttctctgcaggctccagccCggagcggtccccagtgccta	11	17	1	0			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	20	3721471	3721471	C	T	SNP	HSPA12B	ENST00000254963	human	ensembl	69_37n	1	known	missense	c.53	p.P18L	0.883	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622	40	0	0	35	5	12.5	-	-	-	T	3721471	C	T	3721471	3	4	452	1	0	0	0	0	1	0	0	0	7458	652	23	1	59	1	HSPA12B	20	3721471	Missense_Mutation	SNP	C	TCGA-B6-A0RT-01A-21D-A099-09		3721471	59304049	9	43106										
MXRA5	0	genome.wustl.edu	37	chrX	3228364	3228364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	ccaccttcagggagaccagcCtctccgtgtggccagcggca	12	16	2	1			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	X	3228364	3228364	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.7880	p.R2627K	0.855	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	30	0	0	59	9	13.24	-	-	-	T	3228364	C	T	3228364	3	4	452	1	0	0	0	0	1	0	0	0	10075	681	24	4	610	4	MXRA5	23	3228364	Missense_Mutation	SNP	C	TCGA-B6-A0RT-01A-21D-A099-09		3228364	152042196	10	43107										
GPR173	0	genome.wustl.edu	37	chrX	53106370	53106370	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	gccaatgacacgctgggcttCatgcttatgttggctgtgct	12	10	1	1			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	X	53106370	53106370	C	T	SNP	GPR173	ENST00000332582	human	ensembl	69_37n	1	known	silent	c.567	p.F189	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194	40	0	0	73	9	10.98	-	-	-	T	53106370	C	T	53106370	2	4	452	1	0	0	0	0	0	0	0	1	6721	825	29	2		2	GPR173	23	53106370	Silent	SNP	C	TCGA-B6-A0RT-01A-21D-A099-09	49878006	53106370	102164190	11	43108										
FATE1	0	genome.wustl.edu	37	chrX	150890415	150890415	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	4	0.0329626695858162	4.70935960591133	6.18103448275862	2.74712643678161	0.485714285714286	1	3	tggcgcagactagcctggaaGagttcaatgtactggagatg	14	7	1	3			TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1a297ed-1951-4d97-978c-56b452111ba5	61f83071-b7fd-4037-aaf2-1db0349d8238	X	150890415	150890415	G	C	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	missense	c.382	p.E128Q	0.572	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	203	0	0	186	40	17.7	-	-	-	C	150890415	G	C	150890415	3	2	452	1	0	0	0	0	1	0	0	0	5739	943	33	2	396	2	FATE1	23	150890415	Missense_Mutation	SNP	G	TCGA-B6-A0RT-01A-21D-A099-09	97784045	150890415	4380145	12	43109										
TTC4	0	genome.wustl.edu	37	chr1	55188450	55188450	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gaagaagcttctggaaatgaGggctaaagcagacaagctga	13	6	1	4			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	55188450	55188450	G	C	SNP	TTC4	ENST00000371281	human	ensembl	69_37n	1	known	missense	c.572	p.R191T	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725	94	0	0	52	8	13.33	-	-	-	C	55188450	G	C	55188450	3	2	453	1	0	0	0	0	1	0	0	0	16807	1000	35	4	590	4	TTC4	1	55188450	Missense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		55188450	194062171	1	43110										
CACNA1E	0	genome.wustl.edu	37	chr1	181688931	181688931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gtggtctgggcaatcttcagAcctggtacgtcttttggaat	12	8	4	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	181688931	181688931	A	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1683	p.R561S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	191	0	0	107	13	10.83	-	-	-	C	181688931	A	C	181688931	3	2	453	1	0	0	0	0	1	0	0	0	2567	272	10	5	1733	5	CACNA1E	1	181688931	Missense_Mutation	SNP	A	TCGA-B6-A0RU-01A-11D-A099-09	126500481	181688931	67561690	2	43111										
MTR	0	genome.wustl.edu	37	chr1	237023140	237023140	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aatttcaattcagactcaagGcacaggagggaagaaagtca	10	7	4	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	237023140	237023140	G	C	SNP	MTR	ENST00000366577	human	ensembl	69_37n	1	known	missense	c.1961	p.G654A	0.831	pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	111	0	0	95	29	23.39	-	-	-	C	237023140	G	C	237023140	3	2	453	1	0	0	0	0	1	0	0	0	10030	1203	42	4	2035	4	MTR	1	237023140	Missense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09	55334209	237023140	12227481	3	43112										
CLASP1	0	genome.wustl.edu	37	chr2	122106150	122106152	+	In_Frame_Del	DEL	CGA	CGA	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	tgactcctttgcgatcctctCgacgactttggtctgcatct							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CGA	CGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	2	122106150	122106152	CGA	-	DEL	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	in_frame_del	c.4351_4349	p.V1450in_frame_del	1.000:0.564:0.985	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	111	0	0	16	2	11.11	-	-	-	-	122106152	CGA	-	122106150	7	5	453	1	0	1	0	1	0	0	0	0	3484	893	31	0	277	0	CLASP1	2	122106150	In_Frame_Del	DEL	CGA	TCGA-B6-A0RU-01A-11D-A099-09		122106150	121093223	4	43113										
ROBO2	0	genome.wustl.edu	37	chr3	77612343	77612343	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ggagcaacaatcagtaaaaaCtatgatttaagtgacctgcc	8	8	1	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	77612343	77612343	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	silent	c.1545	p.N515	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	72	0	0	45	25	35.71	-	-	-	T	77612343	C	T	77612343	2	4	453	1	0	0	0	0	0	0	0	1	13600	564	20	4		4	ROBO2	3	77612343	Silent	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		77612343	120410087	5	43114										
POLQ	0	genome.wustl.edu	37	chr3	121158894	121158894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ctggcaaatatctacgccttCccaaaatggtctgaacaaat	6	11	2	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	121158894	121158894	C	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.7334	p.G2445V	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	216	0	0	193	82	29.71	-	-	-	A	121158894	C	A	121158894	3	1	453	1	0	0	0	0	1	0	0	0	12282	855	30	2	454	2	POLQ	3	121158894	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09	43546551	121158894	76863536	6	43115										
HLTF	0	genome.wustl.edu	37	chr3	148793804	148793806	+	In_Frame_Del	DEL	GTT	GTT	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ataagggttattaggatctcGttgtaatgcaaccatttcat							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	148793804	148793806	GTT	-	DEL	HLTF	ENST00000310053	human	ensembl	69_37n	-1	known	in_frame_del	c.259_257	p.Q86in_frame_del	1.000:1.000:1.000	pfam_HIP116_Rad5p_N,smart_HIP116_Rad5p_N	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794	108	0	0	255	108	29.43	-	-	-	-	148793806	GTT	-	148793804	7	5	453	1	0	1	0	1	0	0	0	0	7266	1153	40	0	2862	0	HLTF	3	148793804	In_Frame_Del	DEL	GTT	TCGA-B6-A0RU-01A-11D-A099-09	27634910	148793804	49228626	7	43116										
C4orf21	0	genome.wustl.edu	37	chr4	113539671	113539671	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	atactattaagactttcattAtccattttactttcagaaat	2	7	2	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	4	113539671	113539671	A	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.1527	p.D509E	0.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	101	0	0	89	54	37.76	-	-	-	T	113539671	A	T	113539671	3	4	453	1	0	0	0	0	1	0	0	0	2275	446	16	5	4879	5	C4orf21	4	113539671	Missense_Mutation	SNP	A	TCGA-B6-A0RU-01A-11D-A099-09		113539671	77614605	8	43117										
PCDHA10	0	genome.wustl.edu	37	chr5	140235801	140235801	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gacctggggctggagctggcGgagctggtgcagcgcctgtt	19	10	0	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	140235801	140235801	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	silent	c.168	p.A56	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	79	0	0	7	10	58.82	-	-	-	A	140235801	G	A	140235801	2	1	453	1	0	0	0	0	0	0	0	1	11593	1103	39	1		1	PCDHA10	5	140235801	Silent	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		140235801	40679459	9	43118										
FABP6	0	genome.wustl.edu	37	chr5	159656619	159656619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	agaagaattatgatgagttcAtgaagctccttggtgagtga	12	4	1	7			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	159656619	159656619	A	C	SNP	FABP6	ENST00000393980	human	ensembl	69_37n	1	known	missense	c.202	p.M68L	0.999	superfamily_Calycin-like,prints_Fatty_acid-bd	superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP6	HGNC	ENSG00000170231	106	0	0	40	9	18.37	-	-	-	C	159656619	A	C	159656619	3	2	453	1	0	0	0	0	1	0	0	0	5401	217	8	5	212	5	FABP6	5	159656619	Missense_Mutation	SNP	A	TCGA-B6-A0RU-01A-11D-A099-09	19420818	159656619	21258641	10	43119										
THOC3	0	genome.wustl.edu	37	chr5	175388335	175388335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	cagaggctgaccaaagcatcTgcacttcctgtggcaaagta	10	11	1	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	175388335	175388335	T	C	SNP	THOC3	ENST00000505969	human	ensembl	69_37n	-1	putative	missense	c.82	p.R28G	0.366	pfam_WD40_repeat,superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THOC3	HGNC	ENSG00000051596	8	0	0	0	3	100	-	-	-	C	175388335	T	C	175388335	3	2	453	1	0	0	0	0	1	0	0	0	15961	1567	55	5	335	5	THOC3	5	175388335	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	15731716	175388335	5526925	11	43120										
UTRN	0	genome.wustl.edu	37	chr6	144768443	144768443	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aggaactaagtgtcagtgttCgacgtctggctgtaagtgat	13	6	2	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	6	144768443	144768443	C	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	nonsense	c.1711	p.R571*	0.999	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	207	0	0	78	71	47.65	-	-	-	T	144768443	C	T	144768443	4	4	453	1	0	0	0	0	0	1	0	0	17200	876	31	1	1765	1	UTRN	6	144768443	Nonsense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		144768443	26346624	12	43121										
SLC25A13	0	genome.wustl.edu	37	chr7	95751180	95751180	+	Frame_Shift_Del	DEL	C	C	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ccttccacagagcttttggtCcttcttcacgcagtatcttt							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	95751180	95751180	C	-	DEL	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	frame_shift_del	c.1724	p.G575fs	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	122	0	0	93	32	25.4	-	-	-	-	95751180	C	-	95751180	7	5	453	1	0	1	0	1	0	0	0	0	14564	855	30	0	318	0	SLC25A13	7	95751180	Frame_Shift_Del	DEL	C	TCGA-B6-A0RU-01A-11D-A099-09		95751180	63387483	13	43122										
ACTL6B	0	genome.wustl.edu	37	chr7	100246265	100246265	+	Frame_Shift_Del	DEL	C	C	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	catggagatgaagtcccctgCcagaggggacttgacgatgc							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	100246265	100246265	C	-	DEL	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_del	c.583	p.A195fs	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	98	0	0	9	2	18.18	-	-	-	-	100246265	C	-	100246265	7	5	453	1	0	1	0	1	0	0	0	0	199	739	26	0	729	0	ACTL6B	7	100246265	Frame_Shift_Del	DEL	C	TCGA-B6-A0RU-01A-11D-A099-09	4495085	100246265	58892398	14	43123										
MUC17	0	genome.wustl.edu	37	chr7	100686212	100686212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ccagcacactttcaacacctCctggtgataccagcacacct	5	17	1	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	100686212	100686212	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.11515	p.P3839S	0.029	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	94	0	0	45	17	27.42	-	-	-	T	100686212	C	T	100686212	3	4	453	1	0	0	0	0	1	0	0	0	10046	855	30	2	11525	2	MUC17	7	100686212	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09	439947	100686212	58452451	15	43124										
COG5	0	genome.wustl.edu	37	chr7	106877126	106877126	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	tcaggttttcctgagctggaTaatgacctgtaaaagaaaaa	9	6	1	3			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	106877126	106877126	T	A	SNP	COG5	ENST00000297135	human	ensembl	69_37n	-1	known	missense	c.1953	p.L651F	0.001	NULL	pfam_COG_su5,pfam_Vps51	-	no_errors	COG5	HGNC	ENSG00000164597	89	0	0	48	12	20	-	-	-	A	106877126	T	A	106877126	3	1	453	1	0	0	0	0	1	0	0	0	3691	1403	49	5	653	5	COG5	7	106877126	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	6190914	106877126	52261537	16	43125										
UNC5D	0	genome.wustl.edu	37	chr8	35608151	35608151	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	cctgttactgccttttggacCcctttgcgtgtcatgtgctc	9	13	1	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	8	35608151	35608151	C	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1987	p.P663T	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	168	0	0	49	31	38.75	-	-	-	A	35608151	C	A	35608151	3	1	453	1	0	0	0	0	1	0	0	0	17092	623	22	4	2037	4	UNC5D	8	35608151	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		35608151	110755871	17	43126										
CNBD1	0	genome.wustl.edu	37	chr8	88249321	88249321	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	tacacttgctgagatgtaccTaccttcatatgactcaatgg	7	10	2	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	8	88249321	88249321	T	A	SNP	CNBD1	ENST00000518476	human	ensembl	69_37n	1	known	missense	c.752	p.L251Q	0.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	88	0	0	46	74	61.16	-	-	-	A	88249321	T	A	88249321	3	1	453	1	0	0	0	0	1	0	0	0	3621	1522	53	5	774	5	CNBD1	8	88249321	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	52641170	88249321	58114701	18	43127										
PALM2	0	genome.wustl.edu	37	chr9	112705127	112705127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aggtgcgctcaggaggcaccGtagtagaaaatggagtgcac	15	8	1	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	9	112705127	112705127	G	A	SNP	PALM2	ENST00000448454	human	ensembl	69_37n	1	known	missense	c.664	p.V222I	0.289	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444	78	0	0	54	19	26.03	-	-	-	A	112705127	G	A	112705127	3	1	453	1	0	0	0	0	1	0	0	0	11482	1145	40	1	694	1	PALM2	9	112705127	Missense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		112705127	28508304	19	43128										
CNNM2	0	genome.wustl.edu	37	chr10	104816543	104816543	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gtaatatcaagttgtgtttaTatctatagaagtagaagcat	8	3	2	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	10	104816543	104816543	T	C	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	missense	c.1898	p.I633T	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	72	0	0	29	27	48.21	-	-	-	C	104816543	T	C	104816543	3	2	453	1	0	0	0	0	1	0	0	0	3643	1421	49	5		5	CNNM2	10	104816543	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09		104816543	30718204	20	43129										
TACC2	0	genome.wustl.edu	37	chr10	123988915	123988915	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ccctcctcagcaggctagctCaccccgtctctctctgtggt	8	18	4	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	10	123988915	123988915	C	T	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.7951	p.H2651Y	0.852	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	146	0	0	23	19	45.24	-	-	-	T	123988915	C	T	123988915	3	4	453	1	0	0	0	0	1	0	0	0	15594	826	29	2	8077	2	TACC2	10	123988915	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09	19172372	123988915	11545832	21	43130										
CD248	0	genome.wustl.edu	37	chr11	66082629	66082629	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ggtctggttagtggggctctGagagggcaggagggtgggga	23	4	2	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	66082629	66082629	G	A	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	nonsense	c.1870	p.Q624*	0.405	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	105	0	0	10	11	52.38	-	-	-	A	66082629	G	A	66082629	4	1	453	1	0	0	0	0	0	1	0	0	3018	1299	45	2	407	2	CD248	11	66082629	Nonsense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		66082629	68923887	22	43131										
CD3E	0	genome.wustl.edu	37	chr11	118185202	118185202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	accacctgttcccaacccagActatgaggtaacgtgggata	9	12	0	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	118185202	118185202	A	G	SNP	CD3E	ENST00000361763	human	ensembl	69_37n	1	known	missense	c.560	p.D187G	1.000	pfam_Phos_immunorcpt_sig_ITAM,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3E	HGNC	ENSG00000198851	62	0	0	7	11	61.11	-	-	-	G	118185202	A	G	118185202	3	3	453	1	0	0	0	0	1	0	0	0	3040	275	10	5	586	5	CD3E	11	118185202	Missense_Mutation	SNP	A	TCGA-B6-A0RU-01A-11D-A099-09	52102573	118185202	16821314	23	43132										
VPS11	0	genome.wustl.edu	37	chr11	118948934	118948934	+	RNA	DEL	A	A	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ccaataacccgcgagagctgAaagccttcctagagcacatg							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	118948934	118948934	A	-	DEL	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	111	0	0	12	2	14.29	-	-	-	-	118948934	A	-	118948934	6	5	453	0	1	1	0	1	0	0	0	0	17285	247	9	0		0	VPS11	11	118948934	RNA	DEL	A	TCGA-B6-A0RU-01A-11D-A099-09	763732	118948934	16057582	24	43133										
ARHGAP5	0	genome.wustl.edu	37	chr14	32560757	32560757	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gcaacttggaaaactgttagTaataaattaaaaaatcatcc	5	6	1	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	14	32560757	32560757	T	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.882	p.S294R	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	62	0	0	63	21	25	-	-	-	A	32560757	T	A	32560757	3	1	453	1	0	0	0	0	1	0	0	0	888	1635	57	5	884	5	ARHGAP5	14	32560757	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09		32560757	74788783	25	43134										
ABCC6	0	genome.wustl.edu	37	chr16	16315440	16315440	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ctactttaagacttcaccagGttccagcctgtcccctgcct	6	16	1	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	16	16315440	16315440	G	C	SNP	ABCC6	ENST00000575728	human	ensembl	69_37n	-1	putative	missense	c.285	p.N95K	0.005	NULL	NULL	-	no_errors	ABCC6	HGNC	ENSG00000091262	77	0	0	11	4	26.67	-	-	-	C	16315440	G	C	16315440	3	2	453	1	0	0	0	0	1	0	0	0	57	1252	44	4	4427	4	ABCC6	16	16315440	Missense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		16315440	74039313	26	43135										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	142	0	0	37	28	43.08	-	-	-	A	7578263	G	A	7578263	4	1	453	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		7578263	73616947	27	43136										
ACSF2	0	genome.wustl.edu	37	chr17	48548486	48548487	+	Frame_Shift_Del	DEL	CT	CT	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aagcgtgggcagaattatgcCtcacacggaggtgagcccct							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	48548486	48548487	CT	-	DEL	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	frame_shift_del	c.1313_1314	p.T440fs	0.987:0.969	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	75	0	0	14	2	12.5	-	-	-	-	48548487	CT	-	48548486	7	5	453	1	0	1	0	1	0	0	0	0	175	681	24	0	1355	0	ACSF2	17	48548486	Frame_Shift_Del	DEL	CT	TCGA-B6-A0RU-01A-11D-A099-09	40970223	48548486	32646724	28	43137										
TEX14	0	genome.wustl.edu	37	chr17	56679891	56679891	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	tgacatcagcttctaaataaTtccccgagactacggctttt	6	11	2	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	56679891	56679891	T	A	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	missense	c.1415	p.N472I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	95	0	0	44	30	40.54	-	-	-	A	56679891	T	A	56679891	3	1	453	1	0	0	0	0	1	0	0	0	15873	1493	52	5	3166	5	TEX14	17	56679891	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	8131405	56679891	24515319	29	43138										
DNAH17	0	genome.wustl.edu	37	chr17	76490785	76490785	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	cacaatcttggggatgttgaAgtctctcagcgcccgcatga	11	11	3	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	76490785	76490785	A	C	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.6118	p.F2040V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	60	0	0	2	4	66.67	-	-	-	C	76490785	A	C	76490785	3	2	453	1	0	0	0	0	1	0	0	0	4637	72	3	5	7396	5	DNAH17	17	76490785	Missense_Mutation	SNP	A	TCGA-B6-A0RU-01A-11D-A099-09	19810894	76490785	4704425	30	43139										
ZNF781	0	genome.wustl.edu	37	chr19	38160608	38160608	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	taaatgccttcccacattctGtacattcgtaaagtctctca	4	12	3	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	19	38160608	38160608	G	A	SNP	ZNF781	ENST00000358582	human	ensembl	69_37n	-1	known	nonsense	c.442	p.Q148*	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381	124	0	0	166	68	28.94	-	-	-	A	38160608	G	A	38160608	4	1	453	1	0	0	0	0	0	1	0	0	18247	1386	48	4	545	4	ZNF781	19	38160608	Nonsense_Mutation	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09		38160608	20968375	31	43140										
C20orf26	0	genome.wustl.edu	37	chr20	20269354	20269354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	cgacttgtgattgataccaaCttccacaccaacgacatagc	6	13	0	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	20	20269354	20269354	C	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.2898	p.N966K	0.030	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	70	0	0	37	16	30.19	-	-	-	A	20269354	C	A	20269354	3	1	453	1	0	0	0	0	1	0	0	0	2126	564	20	4	3016	4	C20orf26	20	20269354	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		20269354	42756166	32	43141										
IGSF5	0	genome.wustl.edu	37	chr21	41137704	41137704	+	Frame_Shift_Del	DEL	C	C	-													0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	tgatcatccacaatgtggagCccagtgattcggggaacatc							TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	21	41137704	41137704	C	-	DEL	IGSF5	ENST00000380588	human	ensembl	69_37n	1	novel	frame_shift_del	c.343	p.S116fs	0.002	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF5	HGNC	ENSG00000183067	114	0	0	15	2	11.76	-	-	-	-	41137704	C	-	41137704	7	5	453	1	0	1	0	1	0	0	0	0	7656	739	26	0	353	0	IGSF5	21	41137704	Frame_Shift_Del	DEL	C	TCGA-B6-A0RU-01A-11D-A099-09		41137704	6992191	33	43142										
HIRA	0	genome.wustl.edu	37	chr22	19349295	19349295	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	agacgagagtccttccgaggCcgccctttcttcttcttctc	8	15	4	2			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	19349295	19349295	C	T	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	silent	c.1935	p.R645	0.951	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	170	0	0	29	13	30.95	-	-	-	T	19349295	C	T	19349295	2	4	453	1	0	0	0	0	0	0	0	1	7171	726	26	4		4	HIRA	22	19349295	Silent	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		19349295	31955271	34	43143										
MORC2	0	genome.wustl.edu	37	chr22	31336819	31336819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aacggcttgacgtgtacttgTacatcctgatcagtagaaaa	9	8	1	3			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	31336819	31336819	T	C	SNP	MORC2	ENST00000397641	human	ensembl	69_37n	-1	known	missense	c.830	p.Y277C	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	-	no_errors	MORC2	HGNC	ENSG00000133422	89	0	0	33	8	19.51	-	-	-	C	31336819	T	C	31336819	3	2	453	1	0	0	0	0	1	0	0	0	9774	1638	57	5	2336	5	MORC2	22	31336819	Missense_Mutation	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	11987524	31336819	19967747	35	43144										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31867874	31867874	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	gaaggcctctgtttggaatgGgggagttcttttatatccaa	12	6	2	0			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	31867874	31867874	G	C	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	silent	c.126	p.P42	0.985	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	134	0	0	189	62	24.7	-	-	-	C	31867874	G	C	31867874	2	2	453	1	0	0	0	0	0	0	0	1	5072	1219	43	4		4	EIF4ENIF1	22	31867874	Silent	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09	531055	31867874	19436692	36	43145										
CSNK1E	0	genome.wustl.edu	37	chr22	38694855	38694855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	cctgccggtggaagaggttgCggaagagctgacgtaggtaa	17	7	0	3			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	38694855	38694855	C	T	SNP	CSNK1E	ENST00000359867	human	ensembl	69_37n	-1	known	missense	c.821	p.R274H	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923	124	1	0.79	17	10	37.04	-	-	-	T	38694855	C	T	38694855	3	4	453	1	0	0	0	0	1	0	0	0	3985	768	27	1	445	1	CSNK1E	22	38694855	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09	6826981	38694855	12609711	37	43146										
BMX	0	genome.wustl.edu	37	chrX	15568080	15568080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	ttaccggccccacctggcatCggacaccatctaccagatca	7	17	2	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	15568080	15568080	C	T	SNP	BMX	ENST00000342014	human	ensembl	69_37n	1	known	missense	c.1913	p.S638L	0.055	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	163	0	0	29	6	17.14	-	-	-	T	15568080	C	T	15568080	3	4	453	1	0	0	0	0	1	0	0	0	1478	893	31	1	1979	1	BMX	23	15568080	Missense_Mutation	SNP	C	TCGA-B6-A0RU-01A-11D-A099-09		15568080	139702480	38	43147										
TSC22D3	0	genome.wustl.edu	37	chrX	106959960	106959960	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aaccacatcccctccaagcaGagaagagaagaaggagatgg	11	10	0	4			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	106959960	106959960	G	A	SNP	TSC22D3	ENST00000372397	human	ensembl	69_37n	-1	known	silent	c.82	p.L28	0.999	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	108	0	0	31	19	38	-	-	-	A	106959960	G	A	106959960	2	1	453	1	0	0	0	0	0	0	0	1	16705	933	33	2		2	TSC22D3	23	106959960	Silent	SNP	G	TCGA-B6-A0RU-01A-11D-A099-09	91391880	106959960	48310600	39	43148										
SAGE1	0	genome.wustl.edu	37	chrX	134986704	134986704	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	3	0.884157066679131	1.0283422459893	0	1.34475524475524	0.1	0.5224358974359	0	aaccagtagctgataatgtcTtgtcaactgctccaccatgg	8	11	2	1			TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	134986704	134986704	T	C	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	silent	c.289	p.L97	0.023	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	121	0	0	45	20	30.77	-	-	-	C	134986704	T	C	134986704	2	2	453	1	0	0	0	0	0	0	0	1	13895	1606	56	5		5	SAGE1	23	134986704	Silent	SNP	T	TCGA-B6-A0RU-01A-11D-A099-09	28026744	134986704	20283856	40	43149										
DNALI1	0	genome.wustl.edu	37	chr1	38024964	38024964	+	Frame_Shift_Del	DEL	G	G	-													0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	acgcagctatggatccagcaGgtgtccagcacccctagcac							TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	1	38024964	38024964	G	-	DEL	DNALI1	ENST00000296218	human	ensembl	69_37n	1	known	frame_shift_del	c.330	p.V111fs	1.000	pfam_Axonemal_dynein_light_chain	pfam_Axonemal_dynein_light_chain	-	no_errors	DNALI1	HGNC	ENSG00000163879	35	0	0	9	2	18.18	-	-	-	-	38024964	G	-	38024964	7	5	454	1	0	1	0	1	0	0	0	0	4694	991	35	0	340	0	DNALI1	1	38024964	Frame_Shift_Del	DEL	G	TCGA-B6-A0RV-01A-11D-A099-09		38024964	211225657	1	43150										
HIPK1	0	genome.wustl.edu	37	chr1	114483438	114483438	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tcatagaagaacatccccctCtcatgctgcaaaacaggact	6	13	2	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	1	114483438	114483438	C	G	SNP	HIPK1	ENST00000369558	human	ensembl	69_37n	1	known	missense	c.433	p.L145V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349	28	0	0	14	7	33.33	-	-	-	G	114483438	C	G	114483438	3	3	454	1	0	0	0	0	1	0	0	0	7167	913	32	2	435	2	HIPK1	1	114483438	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	76458474	114483438	134767183	2	43151										
IKBKE	0	genome.wustl.edu	37	chr1	206658614	206658614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ctgaaccgggagctggtgaaGagccgggatcaggtacatga	16	8	1	4			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	1	206658614	206658614	G	A	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	silent	c.1587	p.K529	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	92	0	0	24	6	20	-	-	-	A	206658614	G	A	206658614	2	1	454	1	0	0	0	0	0	0	0	1	7666	933	33	2		2	IKBKE	1	206658614	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	92175176	206658614	42592007	3	43152										
RRM2	0	genome.wustl.edu	37	chr2	10269010	10269010	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tttgcttgcctgatgttcaaAcacctggtacacaaaccatc	6	12	1	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	2	10269010	10269010	A	G	SNP	RRM2	ENST00000360566	human	ensembl	69_37n	1	known	silent	c.1014	p.K338	0.998	pfam_Ribonucl_Rdtase_small,superfamily_Ferritin/RR-like	pfam_Ribonucl_Rdtase_small,superfamily_Ferritin/RR-like	-	no_errors	RRM2	HGNC	ENSG00000171848	229	0	0	229	63	21.58	-	-	-	G	10269010	A	G	10269010	2	3	454	1	0	0	0	0	0	0	0	1	13768	40	2	5		5	RRM2	2	10269010	Silent	SNP	A	TCGA-B6-A0RV-01A-11D-A099-09		10269010	232930363	4	43153										
RGPD3	0	genome.wustl.edu	37	chr2	107042506	107042506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	atactgggaattatatgctgGtgactgactataatatactg	9	5	0	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	2	107042506	107042506	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.2644	p.P882S	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	300	0	0	321	45	12.3	-	-	-	A	107042506	G	A	107042506	3	1	454	1	0	0	0	0	1	0	0	0	13370	1261	44	4	2652	4	RGPD3	2	107042506	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	96773496	107042506	136156867	5	43154										
NCKAP5	0	genome.wustl.edu	37	chr2	133541462	133541462	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	actggagcagaaattcctttCagcagcggggatttgaatgg	13	7	1	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	2	133541462	133541462	C	T	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.2922	p.L974	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	16	0	0	18	4	18.18	-	-	-	T	133541462	C	T	133541462	2	4	454	1	0	0	0	0	0	0	0	1	10295	813	29	2		2	NCKAP5	2	133541462	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	26498956	133541462	109657911	6	43155										
NEB	0	genome.wustl.edu	37	chr2	152406191	152406191	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gtccttgatgtgtttgaagtGaggagtgtcacctggaagtc	14	6	1	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	2	152406191	152406191	G	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.20008	p.H6670D	0.511	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	405	0	0	143	45	23.94	-	-	-	C	152406191	G	C	152406191	3	2	454	1	0	0	0	0	1	0	0	0	10374	1290	45	2	5890	2	NEB	2	152406191	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	18864729	152406191	90793182	7	43156										
IFIH1	0	genome.wustl.edu	37	chr2	163128799	163128799	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	atagctttatacatcatcttCtctcggaaatcattaactgt	4	9	4	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	2	163128799	163128799	C	G	SNP	IFIH1	ENST00000263642	human	ensembl	69_37n	-1	known	missense	c.2553	p.E851D	1.000	pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_DEATH-like,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267	247	0	0	163	31	15.98	-	-	-	G	163128799	C	G	163128799	3	3	454	1	0	0	0	0	1	0	0	0	7574	912	32	2	540	2	IFIH1	2	163128799	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	10722608	163128799	80070574	8	43157										
JAGN1	0	genome.wustl.edu	37	chr3	9934708	9934708	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tgaggctcttgtcacatgatCaggtggccatgccctatcag	11	11	4	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	3	9934708	9934708	C	T	SNP	JAGN1	ENST00000307768	human	ensembl	69_37n	1	known	nonsense	c.199	p.Q67*	0.986	pfam_DUF1352	pfam_DUF1352	-	no_errors	JAGN1	HGNC	ENSG00000171135	246	0	0	96	30	23.81	-	-	-	T	9934708	C	T	9934708	4	4	454	1	0	0	0	0	0	1	0	0	7990	827	29	2	205	2	JAGN1	3	9934708	Nonsense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		9934708	188087722	9	43158										
CACNA1D	0	genome.wustl.edu	37	chr3	53839094	53839094	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	taccatcatccccaaggattCttggaggacgatgactcgcc	9	13	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	3	53839094	53839094	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	silent	c.5730	p.F1910	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	87	0	0	39	5	11.36	-	-	-	T	53839094	C	T	53839094	2	4	454	1	0	0	0	0	0	0	0	1	2566	912	32	2		2	CACNA1D	3	53839094	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	43904386	53839094	144183336	10	43159										
ADD1	0	genome.wustl.edu	37	chr4	2930220	2930220	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ttccgtaccccgtcctttctGaagaagagcaagaagaagag	10	10	1	6			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	4	2930220	2930220	G	A	SNP	ADD1	ENST00000264758	human	ensembl	69_37n	1	known	silent	c.2277	p.L759	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	37	0	0	26	6	18.75	-	-	-	A	2930220	G	A	2930220	2	1	454	1	0	0	0	0	0	0	0	1	304	1277	45	2		2	ADD1	4	2930220	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		2930220	188224056	11	43160										
EXOC3	0	genome.wustl.edu	37	chr5	446329	446329	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	agctttttcaccatgaaggaGacagaccgggaggccgttgc	13	10	1	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	5	446329	446329	G	A	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	silent	c.9	p.E3	1.000	NULL	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	104	0	0	34	9	20.93	-	-	-	A	446329	G	A	446329	2	1	454	1	0	0	0	0	0	0	0	1	5339	933	33	2		2	EXOC3	5	446329	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		446329	180468931	12	43161										
ADCY2	0	genome.wustl.edu	37	chr5	7802447	7802447	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ggcttggaatgccttcggctCctgaacgagatcatcgctga	12	11	1	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	5	7802447	7802447	C	G	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.2745	p.L915	0.999	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	161	0	0	50	25	33.33	-	-	-	G	7802447	C	G	7802447	2	3	454	1	0	0	0	0	0	0	0	1	294	842	30	2		2	ADCY2	5	7802447	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	7356118	7802447	173112813	13	43162										
PDZD2	0	genome.wustl.edu	37	chr5	32101067	32101070	+	Splice_Site	DEL	TAAG	TAAG	-													0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	actgggctcaagtgctgttaTaagtaagtaagtgccccagg							TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	TAAG	TAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	5	32101067	32101070	TAAG	-	DEL	PDZD2	ENST00000397559	human	ensembl	69_37n	1	known	splice_site_del	c.NULL	NULL	0.001:0.002:0.002:0.001	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401	24	0	0	5	3	37.5	-	-	-	-	32101070	TAAG	-	32101067	8	5	454	1	0	1	0	1	0	0	1	0	11774	1421	49	0		0	PDZD2	5	32101067	Splice_Site	DEL	TAAG	TCGA-B6-A0RV-01A-11D-A099-09	24298620	32101067	148814193	14	43163										
GRIA1	0	genome.wustl.edu	37	chr5	153065794	153065794	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ttgttttccaggtgcgatttGaaggtttaacaggaaacgtg	12	5	0	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	5	153065794	153065794	G	C	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.1069	p.E357Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	131	0	0	90	17	15.89	-	-	-	C	153065794	G	C	153065794	3	2	454	1	0	0	0	0	1	0	0	0	6818	1291	45	2	1069	2	GRIA1	5	153065794	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	120964727	153065794	27849466	15	43164										
GMDS	0	genome.wustl.edu	37	chr6	2124947	2124947	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gcctttctccagcaggaactCagccaggtaggaaccatcct	9	14	2	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	6	2124947	2124947	C	G	SNP	GMDS	ENST00000380815	human	ensembl	69_37n	-1	known	missense	c.121	p.E41Q	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699	163	0	0	66	11	14.29	-	-	-	G	2124947	C	G	2124947	3	3	454	1	0	0	0	0	1	0	0	0	6538	835	29	2	1037	2	GMDS	6	2124947	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		2124947	168990120	16	43165										
VPS41	0	genome.wustl.edu	37	chr7	38796567	38796567	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tccagagcattgccatagttCttgtcataggtgtacctggt	10	9	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	7	38796567	38796567	C	G	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.1566	p.K522N	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	245	0	0	232	133	36.34	-	-	-	G	38796567	C	G	38796567	3	3	454	1	0	0	0	0	1	0	0	0	17307	912	32	2	1042	2	VPS41	7	38796567	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		38796567	120342096	17	43166										
AKAP9	0	genome.wustl.edu	37	chr7	91712715	91712715	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gcaatcagactccacaaattCttgttaaaaatgcaggaata	6	8	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	7	91712715	91712715	C	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.8428	p.L2810V	0.124	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	93	0	0	79	45	36.29	-	-	-	G	91712715	C	G	91712715	3	3	454	1	0	0	0	0	1	0	0	0	459	913	32	2	8522	2	AKAP9	7	91712715	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	52916148	91712715	67425948	18	43167										
C7orf66	0	genome.wustl.edu	37	chr7	108524578	108524578	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	agaccatcactgggtgtcatCacagccatcattttgcaagg	9	11	4	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	7	108524578	108524578	C	G	SNP	C7orf66	ENST00000379007	human	ensembl	69_37n	-1	putative	silent	c.12	p.V4	0.000	NULL	NULL	-	no_errors	C7orf66	HGNC	ENSG00000205174	200	0	0	107	74	40.88	-	-	-	G	108524578	C	G	108524578	2	3	454	1	0	0	0	0	0	0	0	1	2435	813	29	2		2	C7orf66	7	108524578	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	16811863	108524578	50614085	19	43168										
INTS8	0	genome.wustl.edu	37	chr8	95884207	95884207	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	aaataaccattcttggttaaTtatccaggcagatatttact	5	7	1	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	8	95884207	95884207	T	C	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	missense	c.2510	p.I837T	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	199	0	0	212	42	16.54	-	-	-	C	95884207	T	C	95884207	3	2	454	1	0	0	0	0	1	0	0	0	7838	1493	52	5	2592	5	INTS8	8	95884207	Missense_Mutation	SNP	T	TCGA-B6-A0RV-01A-11D-A099-09		95884207	50479815	20	43169										
VPS13B	0	genome.wustl.edu	37	chr8	100729551	100729551	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	acagcgggaatccaggcccaGaacaatccataccaaaaata	7	12	0	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	8	100729551	100729551	G	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.6682	p.E2228Q	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	122	0	0	125	32	20.38	-	-	-	C	100729551	G	C	100729551	3	2	454	1	0	0	0	0	1	0	0	0	17287	943	33	2	7018	2	VPS13B	8	100729551	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	4845344	100729551	45634471	21	43170										
ABL1	0	genome.wustl.edu	37	chr9	133750254	133750254	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gtgaacattttcctttcttaGagatcttgctgcccgaaact	7	10	2	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	9	133750254	133750254	G	C	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	splice_site	c.1143-1	e7-1	1.000	-	-	-	no_errors	ABL1	HGNC	ENSG00000097007	157	0	0	50	18	26.47	-	-	-	C	133750254	G	C	133750254	5	2	454	1	0	0	0	0	0	0	1	0	92	956	33	2	1251	2	ABL1	9	133750254	Splice_Site	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		133750254	7463177	22	43171										
FRMPD2	0	genome.wustl.edu	37	chr10	49379163	49379163	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	atcctcacaagatcacttttGagatggctgcagctctcttt	7	11	3	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	10	49379163	49379163	G	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	silent	c.3312	p.L1104	0.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	97	0	0	78	15	16.13	-	-	-	C	49379163	G	C	49379163	2	2	454	1	0	0	0	0	0	0	0	1	6107	1277	45	2		2	FRMPD2	10	49379163	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		49379163	86155584	23	43172										
CDK1	0	genome.wustl.edu	37	chr10	62553685	62553685	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	atttctggcaaaatggcactGaatcatccatattttaatga	6	7	2	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	10	62553685	62553685	G	A	SNP	CDK1	ENST00000395284	human	ensembl	69_37n	1	known	silent	c.846	p.L282	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK1	HGNC	ENSG00000170312	113	0	0	107	22	17.05	-	-	-	A	62553685	G	A	62553685	2	1	454	1	0	0	0	0	0	0	0	1	3153	1277	45	2		2	CDK1	10	62553685	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	13174522	62553685	72981062	24	43173										
STK33	0	genome.wustl.edu	37	chr11	8435219	8435219	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tctaatacattggttggtctCaccgaagaaagtttattgcc	8	8	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	11	8435219	8435219	C	T	SNP	STK33	ENST00000315204	human	ensembl	69_37n	-1	known	silent	c.1167	p.V389	0.220	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK33	HGNC	ENSG00000130413	304	0	0	310	83	21.12	-	-	-	T	8435219	C	T	8435219	2	4	454	1	0	0	0	0	0	0	0	1	15391	813	29	2		2	STK33	11	8435219	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		8435219	126571297	25	43174										
SWAP70	0	genome.wustl.edu	37	chr11	9735179	9735179	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gtatccattaattattgtgtCagaagaggtaaggtgtggct	12	4	1	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	11	9735179	9735179	C	T	SNP	SWAP70	ENST00000318950	human	ensembl	69_37n	1	known	missense	c.407	p.S136L	0.934	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_HAND_2,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789	120	0	0	126	39	23.49	-	-	-	T	9735179	C	T	9735179	3	4	454	1	0	0	0	0	1	0	0	0	15516	838	29	2	417	2	SWAP70	11	9735179	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	1299960	9735179	125271337	26	43175										
FAR1	0	genome.wustl.edu	37	chr11	13721953	13721953	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	acccaacctaaactggctctCagtgaagaagataaagaggt	9	9	1	4			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	11	13721953	13721953	C	T	SNP	FAR1	ENST00000354817	human	ensembl	69_37n	1	known	silent	c.279	p.L93	0.730	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase	pfam_Male_sterile_NAD-bd,pfam_Malesterile,pfam_Epimerase_deHydtase	-	no_errors	FAR1	HGNC	ENSG00000197601	144	1	0.69	89	16	15.24	-	-	-	T	13721953	C	T	13721953	2	4	454	1	0	0	0	0	0	0	0	1	5720	813	29	2		2	FAR1	11	13721953	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	3986774	13721953	121284563	27	43176										
ATM	0	genome.wustl.edu	37	chr11	108186737	108186737	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tttcacaatcttttcttataGactacgaacatatgaacacg	4	9	3	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	11	108186737	108186737	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	splice_site	c.6096-1	e41-1	1.000	-	-	-	no_errors	ATM	HGNC	ENSG00000149311	190	0	0	91	32	25.81	-	-	-	A	108186737	G	A	108186737	5	1	454	1	0	0	0	0	0	0	1	0	1113	956	33	2	6257	2	ATM	11	108186737	Splice_Site	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	94464784	108186737	26819779	28	43177										
ARID2	0	genome.wustl.edu	37	chr12	46211464	46211464	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ctttgttagattatctgcgtCaaagttatgggctgtccatg	10	7	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	12	46211464	46211464	C	T	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	nonsense	c.430	p.Q144*	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	123	0	0	92	36	28.12	-	-	-	T	46211464	C	T	46211464	4	4	454	1	0	0	0	0	0	1	0	0	917	827	29	2	448	2	ARID2	12	46211464	Nonsense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		46211464	87640431	29	43178										
ANAPC7	0	genome.wustl.edu	37	chr12	110832986	110832986	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ttttagcattgtataacattCagccattttgtatttcactt	4	7	2	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	12	110832986	110832986	C	T	SNP	ANAPC7	ENST00000455511	human	ensembl	69_37n	-1	known	missense	c.430	p.E144K	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510	298	0	0	270	67	19.88	-	-	-	T	110832986	C	T	110832986	3	4	454	1	0	0	0	0	1	0	0	0	606	835	29	2	1409	2	ANAPC7	12	110832986	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	64621522	110832986	23018909	30	43179										
USP12	0	genome.wustl.edu	37	chr13	27664021	27664021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	cataaagctctaaaattaccGtttgtgtgcttcctgtttgc	7	9	1	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	13	27664021	27664021	G	A	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.733	p.R245W	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	183	0	0	188	53	21.99	-	-	-	A	27664021	G	A	27664021	3	1	454	1	0	0	0	0	1	0	0	0	17140	1159	40	1	395	1	USP12	13	27664021	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		27664021	87505857	31	43180										
SALL2	0	genome.wustl.edu	37	chr14	21992915	21992915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	ttgggaatgccagatgaggcGaggcaatcagctgatctgtg	15	7	2	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	14	21992915	21992915	G	A	SNP	SALL2	ENST00000327430	human	ensembl	69_37n	-1	known	missense	c.947	p.S316L	0.047	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	69	0	0	23	10	30.3	-	-	-	A	21992915	G	A	21992915	3	1	454	1	0	0	0	0	1	0	0	0	13897	1059	37	1	2080	1	SALL2	14	21992915	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		21992915	85356625	32	43181										
NDNL2	0	genome.wustl.edu	37	chr15	29561355	29561355	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gtgttgcccttcataaagatGagccctaagacgatcatcag	9	10	3	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	15	29561355	29561355	G	A	SNP	NDNL2	ENST00000332303	human	ensembl	69_37n	-1	known	silent	c.555	p.L185	0.960	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDNL2	HGNC	ENSG00000185115	100	0	0	37	10	21.28	-	-	-	A	29561355	G	A	29561355	2	1	454	1	0	0	0	0	0	0	0	1	10320	1277	45	2		2	NDNL2	15	29561355	Silent	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		29561355	72970037	33	43182										
SEPT1	0	genome.wustl.edu	37	chr16	30393617	30393617	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tgccaccattagcgtgaagtCaaaccccttcttgacagact	7	13	2	3			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	16	30393617	30393617	C	G	SNP	SEPT1	ENST00000321367	human	ensembl	69_37n	-1	known	missense	c.88	p.D30H	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	138	0	0	28	16	36.36	-	-	-	G	30393617	C	G	30393617	3	3	454	1	0	0	0	0	1	0	0	0	14147	826	29	2	1070	2	SEPT1	16	30393617	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		30393617	59961136	34	43183										
ABCC12	0	genome.wustl.edu	37	chr16	48149418	48149418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	cttccccacgtgggcgtccaCggccgacagggggtcgtcca	14	16	0	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	16	48149418	48149418	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.1897	p.V633M	0.994	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	131	0	0	29	11	27.5	-	-	-	T	48149418	C	T	48149418	3	4	454	1	0	0	0	0	1	0	0	0	52	536	19	1	2250	1	ABCC12	16	48149418	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	17755801	48149418	42205335	35	43184										
ALOX12	0	genome.wustl.edu	37	chr17	6902773	6902773	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gagcttcaggctcaactggaGaaagaacttcaggtacctct	10	10	4	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	17	6902773	6902773	G	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.795	p.E265D	0.981	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	189	0	0	43	23	34.85	-	-	-	C	6902773	G	C	6902773	3	2	454	1	0	0	0	0	1	0	0	0	536	933	33	2	817	2	ALOX12	17	6902773	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		6902773	74292437	36	43185										
MAP2K4	0	genome.wustl.edu	37	chr17	12043202	12043202	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	caaagtataaagagcttctgGtgagtgtgggactgtgggga	16	4	1	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	17	12043202	12043202	G	A	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site	c.1119+1	e11+1	1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	209	0	0	119	33	21.71	-	-	-	A	12043202	G	A	12043202	5	1	454	1	0	0	0	0	0	0	1	0	9310	1275	44	4	1125	4	MAP2K4	17	12043202	Splice_Site	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	5140429	12043202	69152008	37	43186										
SLFN12L	0	genome.wustl.edu	37	chr17	33807200	33807200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	cagcagctaagccatttccaCgcagaaattcttttctgtaa	6	11	2	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	17	33807200	33807200	C	T	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	missense	c.122	p.R41H	0.078	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	93	0	0	47	12	20.34	-	-	-	T	33807200	C	T	33807200	3	4	454	1	0	0	0	0	1	0	0	0	14824	536	19	1	1749	1	SLFN12L	17	33807200	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	21763998	33807200	47388010	38	43187										
CACNA1G	0	genome.wustl.edu	37	chr17	48681624	48681624	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	tgtgccttcttcatcattttCggcatcttgggggtgcaggt	12	9	4	0			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	17	48681624	48681624	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	silent	c.4278	p.F1426	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	301	0	0	110	19	14.62	-	-	-	T	48681624	C	T	48681624	2	4	454	1	0	0	0	0	0	0	0	1	2569	883	31	1		1	CACNA1G	17	48681624	Silent	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09	14874424	48681624	32513586	39	43188										
ZNF610	0	genome.wustl.edu	37	chr19	52856956	52856956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gacgcttgacattcatggacGtggccatcgaattctctcag	10	11	3	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	19	52856956	52856956	G	A	SNP	ZNF610	ENST00000327920	human	ensembl	69_37n	1	known	missense	c.85	p.V29M	0.972	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	237	0	0	145	52	26.4	-	-	-	A	52856956	G	A	52856956	3	1	454	1	0	0	0	0	1	0	0	0	18132	1145	40	1	91	1	ZNF610	19	52856956	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09		52856956	6272027	40	43189										
CST5	0	genome.wustl.edu	37	chr20	23860130	23860130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	agggcggctgtagtactcatCcttattaatgaccttgttgt	10	8	1	1			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	20	23860130	23860130	C	T	SNP	CST5	ENST00000304710	human	ensembl	69_37n	-1	known	missense	c.184	p.D62N	0.001	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST5	HGNC	ENSG00000170367	144	0	0	34	11	24.44	-	-	-	T	23860130	C	T	23860130	3	4	454	1	0	0	0	0	1	0	0	0	4007	855	30	2	256	2	CST5	20	23860130	Missense_Mutation	SNP	C	TCGA-B6-A0RV-01A-11D-A099-09		23860130	39165390	41	43190										
TH1L	0	genome.wustl.edu	37	chr20	57564035	57564035	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	accttttttataaactggctGaagcccatccagactgtttg	7	10	0	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	20	57564035	57564035	G	A	SNP	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	missense	c.490	p.E164K	1.000	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	185	0	0	88	33	27.27	-	-	-	A	57564035	G	A	57564035	3	1	454	1	0	0	0	0	1	0	0	0	15934	1291	45	2	508	2	TH1L	20	57564035	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	33703905	57564035	5461485	42	43191										
KCNQ2	0	genome.wustl.edu	37	chr20	62078142	62078142	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674418604651163	29	8.629434093176e-12	3.92966524216524	4.93240740740741	3.30295138888889	1	1	22	gagctcttctcatactccttGatggtggaaaacacagacag	9	10	2	2			TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39b0b605-29ae-4e2c-81dc-319446c807dd	00bd0921-b765-4fbd-ab79-4d85aba0d1f6	20	62078142	62078142	G	C	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.345	p.I115M	1.000	prints_K_chnl_volt-dep_KCNQ2	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	61	0	0	18	5	21.74	-	-	-	C	62078142	G	C	62078142	3	2	454	1	0	0	0	0	1	0	0	0	8137	1280	45	2	2401	2	KCNQ2	20	62078142	Missense_Mutation	SNP	G	TCGA-B6-A0RV-01A-11D-A099-09	4514107	62078142	947378	43	43192										
CD1D	0	genome.wustl.edu	37	chr1	158150918	158150918	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	tgcctgctgtttctgctgctCtgggcgctcctccaggcttg	12	14	2	0			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	158150918	158150918	C	T	SNP	CD1D	ENST00000368171	human	ensembl	69_37n	1	known	silent	c.27	p.L9	0.003	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1D	HGNC	ENSG00000158473	8	0	0	42	14	25	-	-	-	T	158150918	C	T	158150918	2	4	455	1	0	0	0	0	0	0	0	1	3006	900	32	2		2	CD1D	1	158150918	Silent	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09		158150918	91099703	1	43193										
IKBKE	0	genome.wustl.edu	37	chr1	206648210	206648210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	tctctgtcccacccatagggCggaagccggcagaaggtact	12	13	1	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	206648210	206648210	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	silent	c.231	p.G77	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	26	0	0	118	35	22.73	-	-	-	T	206648210	C	T	206648210	2	4	455	1	0	0	0	0	0	0	0	1	7666	755	27	1		1	IKBKE	1	206648210	Silent	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09	48497292	206648210	42602411	2	43194										
ZDHHC3	0	genome.wustl.edu	37	chr3	44970893	44970893	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	aaagcacagcaggataaggaGaatcactgtggtgggtggag	16	5	1	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	44970893	44970893	G	T	SNP	ZDHHC3	ENST00000296127	human	ensembl	69_37n	-1	known	missense	c.730	p.L244I	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC3	HGNC	ENSG00000163812	53	0	0	93	25	21.19	-	-	-	T	44970893	G	T	44970893	3	4	455	1	0	0	0	0	1	0	0	0	17712	942	33	2	514	2	ZDHHC3	3	44970893	Missense_Mutation	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09		44970893	153051537	3	43195										
CCR2	0	genome.wustl.edu	37	chr3	46399915	46399915	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	cttgggatgactcactgctgCatcaatcccatcatctatgc	7	13	4	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	46399915	46399915	C	T	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	1	known	silent	c.897	p.C299	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	82	0	0	93	35	27.34	-	-	-	T	46399915	C	T	46399915	2	4	455	1	0	0	0	0	0	0	0	1	2970	718	25	4		4	CCR2	3	46399915	Silent	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09	1429022	46399915	151622515	4	43196										
FSTL5	0	genome.wustl.edu	37	chr4	162577518	162577518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	taaattatttagaataatatTgttccttttccagataatgg	5	4	0	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	4	162577518	162577518	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.856	p.N286D	0.978	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	174	0	0	77	21	21.43	-	-	-	C	162577518	T	C	162577518	3	2	455	1	0	0	0	0	1	0	0	0	6129	1812	63	5	1727	5	FSTL5	4	162577518	Missense_Mutation	SNP	T	TCGA-B6-A0WS-01A-11D-A10Y-09		162577518	28576758	5	43197										
ANKH	0	genome.wustl.edu	37	chr5	14716838	14716838	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	gaactgggaagaaggagaagAtccgcaaaggaacaacacag	13	7	0	3			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	5	14716838	14716838	A	T	SNP	ANKH	ENST00000284268	human	ensembl	69_37n	-1	known	missense	c.1118	p.I373N	1.000	NULL	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122	80	0	0	82	16	16	-	-	-	T	14716838	A	T	14716838	3	4	455	1	0	0	0	0	1	0	0	0	627	333	12	5	376	5	ANKH	5	14716838	Missense_Mutation	SNP	A	TCGA-B6-A0WS-01A-11D-A10Y-09		14716838	166198422	6	43198										
CAPN11	0	genome.wustl.edu	37	chr6	44150736	44150736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	cttgaactcctatgagatgcGcctggttattgagaaagcag	11	8	0	3			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	6	44150736	44150736	G	T	SNP	CAPN11	ENST00000398776	human	ensembl	69_37n	1	known	missense	c.1997	p.R666L	0.995	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	47	0	0	120	23	15.97	-	-	-	T	44150736	G	T	44150736	3	4	455	1	0	0	0	0	1	0	0	0	2649	1087	38	3	2075	3	CAPN11	6	44150736	Missense_Mutation	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09		44150736	126964331	7	43199										
EEF1A1	0	genome.wustl.edu	37	chr6	74228163	74228163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	acgaacatccttgacagacaCattcttgacattgaagccca	6	12	1	4			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	6	74228163	74228163	C	G	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.943	p.V315L	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	39	0	0	68	8	10.53	-	-	-	G	74228163	C	G	74228163	3	3	455	1	0	0	0	0	1	0	0	0	4958	478	17	4	457	4	EEF1A1	6	74228163	Missense_Mutation	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09	30077427	74228163	96886904	8	43200										
MCM4	0	genome.wustl.edu	37	chr8	48882407	48882407	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	aatccaagagtgagtaatgtGaagtctgtctacaaaaccca	8	8	2	3			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	48882407	48882407	G	A	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	silent	c.1224	p.V408	0.995	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	74	0	0	152	27	15	-	-	-	A	48882407	G	A	48882407	2	1	455	1	0	0	0	0	0	0	0	1	9460	1277	45	2		2	MCM4	8	48882407	Silent	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09		48882407	97481615	9	43201										
FAM91A1	0	genome.wustl.edu	37	chr8	124796718	124796718	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	tgtttgttttagttccacctCttgaaggttttgtaatgaat	8	5	1	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	124796718	124796718	C	T	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.712	p.L238F	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	298	0	0	83	45	35.16	-	-	-	T	124796718	C	T	124796718	3	4	455	1	0	0	0	0	1	0	0	0	5697	913	32	2	746	2	FAM91A1	8	124796718	Missense_Mutation	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09	75914311	124796718	21567304	10	43202										
RABEPK	0	genome.wustl.edu	37	chr9	127994885	127994885	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	ctcttggcaggtgacatgaaAtggcagaagctaaatcccac	10	10	1	3			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	9	127994885	127994885	A	G	SNP	RABEPK	ENST00000373538	human	ensembl	69_37n	1	known	silent	c.687	p.K229	0.887	pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933	23	0	0	56	25	30.86	-	-	-	G	127994885	A	G	127994885	2	3	455	1	0	0	0	0	0	0	0	1	13046	98	4	5		5	RABEPK	9	127994885	Silent	SNP	A	TCGA-B6-A0WS-01A-11D-A10Y-09		127994885	13218546	11	43203										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0	88	20	18.52	-	-	-	-	8111434	CA	-	8111433	8	5	455	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-B6-A0WS-01A-11D-A10Y-09		8111433	127423314	12	43204										
OR51V1	0	genome.wustl.edu	37	chr11	5221911	5221911	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	tagggcttactgaagtaatcAttctggaactgagaaacatg	10	6	2	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	5221911	5221911	A	G	SNP	OR51V1	ENST00000321255	human	ensembl	69_37n	-1	known	missense	c.20	p.M7T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	55	0	0	59	18	23.38	-	-	-	G	5221911	A	G	5221911	3	3	455	1	0	0	0	0	1	0	0	0	11180	217	8	5	948	5	OR51V1	11	5221911	Missense_Mutation	SNP	A	TCGA-B6-A0WS-01A-11D-A10Y-09		5221911	129784605	13	43205										
WDR74	0	genome.wustl.edu	37	chr11	62603453	62603453	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	tgggtcagaggatgtgtcctTgtccttgtcatgccagactc	12	10	2	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	62603453	62603453	T	A	SNP	WDR74	ENST00000278856	human	ensembl	69_37n	-1	known	nonsense	c.349	p.K117*	0.358	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316	76	0	0	154	44	22.22	-	-	-	A	62603453	T	A	62603453	4	1	455	1	0	0	0	0	0	1	0	0	17421	1821	63	5	840	5	WDR74	11	62603453	Nonsense_Mutation	SNP	T	TCGA-B6-A0WS-01A-11D-A10Y-09	57381542	62603453	72403063	14	43206										
KCTD10	0	genome.wustl.edu	37	chr12	109895450	109895450	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	cttacctggtatatgagtatTtgttgttacttctgttgtag	9	5	1	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	12	109895450	109895450	T	G	SNP	KCTD10	ENST00000228495	human	ensembl	69_37n	-1	known	missense	c.512	p.K171T	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	291	1	0.34	353	118	25.05	-	-	-	G	109895450	T	G	109895450	3	3	455	1	0	0	0	0	1	0	0	0	8151	1841	64	5	441	5	KCTD10	12	109895450	Missense_Mutation	SNP	T	TCGA-B6-A0WS-01A-11D-A10Y-09		109895450	23956445	15	43207										
ATAD5	0	genome.wustl.edu	37	chr17	29220890	29220890	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	agggaacaaaacaaatacggTagaaatgactttagttggac	10	5	0	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	29220890	29220890	T	C	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	silent	c.5019	p.G1673	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	292	0	0	187	42	18.34	-	-	-	C	29220890	T	C	29220890	2	2	455	1	0	0	0	0	0	0	0	1	1080	1625	57	5		5	ATAD5	17	29220890	Silent	SNP	T	TCGA-B6-A0WS-01A-11D-A10Y-09		29220890	51974320	16	43208										
SLFN13	0	genome.wustl.edu	37	chr17	33768827	33768827	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	ctcaagagagacctgaagccGagtaagacaatcacgaggga	12	9	2	4			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	33768827	33768827	G	A	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	silent	c.1677	p.L559	0.279	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	10	0	0	7	4	36.36	-	-	-	A	33768827	G	A	33768827	2	1	455	1	0	0	0	0	0	0	0	1	14825	1045	37	1		1	SLFN13	17	33768827	Silent	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09	4547937	33768827	47426383	17	43209										
TANC2	0	genome.wustl.edu	37	chr17	61489359	61489359	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	ctgcttgatccgtgtcctagGtccagttcctggtagatcat	10	11	1	2			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	61489359	61489359	G	A	SNP	TANC2	ENST00000583356	human	ensembl	69_37n	1	putative	nonsense	c.3330	p.W1110*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	50	0	0	84	28	25	-	-	-	A	61489359	G	A	61489359	4	1	455	1	0	0	0	0	0	1	0	0	15637	1275	44	4	3626	4	TANC2	17	61489359	Nonsense_Mutation	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09	27720532	61489359	19705851	18	43210										
CHAF1A	0	genome.wustl.edu	37	chr19	4428843	4428843	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	ggccggcagcccctgaggtcCggacccacgcacgtttccac	12	18	0	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	4428843	4428843	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	silent	c.1560	p.S520	0.103	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	18	0	0	23	13	36.11	-	-	-	T	4428843	C	T	4428843	2	4	455	1	0	0	0	0	0	0	0	1	3340	639	23	1		1	CHAF1A	19	4428843	Silent	SNP	C	TCGA-B6-A0WS-01A-11D-A10Y-09		4428843	54700140	19	43211										
FCGBP	0	genome.wustl.edu	37	chr19	40392719	40392719	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	40392719	40392719	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.7785	p.N2595	0.999	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	8	0	0	40	19	32.2	-	-	-	A	40392719	G	A	40392719	2	1	455	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40392719	Silent	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09	35963876	40392719	18736264	20	43212										
PDE9A	0	genome.wustl.edu	37	chr21	44106372	44106372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.53666834570571	1.82272727272727	0	2.005	0.142857142857143	0.62934362934363	0	catcgccaccggcctgcctcGgtgagtgcgcgctgcgggct	15	16	0	1			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	21	44106372	44106372	G	A	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	1	known	missense	c.140	p.R47Q	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	9	0	0	53	21	28.38	-	-	-	A	44106372	G	A	44106372	3	1	455	1	0	0	0	0	1	0	0	0	11728	1130	39	1	146	1	PDE9A	21	44106372	Missense_Mutation	SNP	G	TCGA-B6-A0WS-01A-11D-A10Y-09		44106372	4023523	21	43213										
ITGB3BP	0	genome.wustl.edu	37	chr1	63955841	63955841	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	acaagttccagttgttggagAataagttataacacttttct	7	6	1	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	1	63955841	63955841	A	T	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	missense	c.214	p.S72T	0.981	NULL	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	278	0	0	111	49	30.63	-	-	-	T	63955841	A	T	63955841	3	4	456	1	0	0	0	0	1	0	0	0	7950	246	9	5	460	5	ITGB3BP	1	63955841	Missense_Mutation	SNP	A	TCGA-B6-A0WT-01A-11D-A10G-09		63955841	185294780	1	43214										
GCC2	0	genome.wustl.edu	37	chr2	109099566	109099566	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	aagaacttcaggtacaacttCaaaagcaaaagaaacagctt	6	8	2	2			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	109099566	109099566	C	A	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.3394	p.Q1132K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	180	0	0	71	37	34.26	-	-	-	A	109099566	C	A	109099566	3	1	456	1	0	0	0	0	1	0	0	0	6336	827	29	2	3440	2	GCC2	2	109099566	Missense_Mutation	SNP	C	TCGA-B6-A0WT-01A-11D-A10G-09		109099566	134099807	2	43215										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	57	0	0	28	15	34.88	-	-	-	C	198266834	T	C	198266834	3	2	456	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-B6-A0WT-01A-11D-A10G-09	89167268	198266834	44932539	3	43216										
PLCD1	0	genome.wustl.edu	37	chr3	38061760	38061760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	ctcctgcaacttgtagaagcGctctctcctccatgagctgg	9	14	1	2			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	3	38061760	38061760	G	A	SNP	PLCD1	ENST00000463876	human	ensembl	69_37n	-1	known	missense	c.181	p.R61C	0.965	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	17	0	0	31	14	31.11	-	-	-	A	38061760	G	A	38061760	3	1	456	1	0	0	0	0	1	0	0	0	12105	1087	38	1	2208	1	PLCD1	3	38061760	Missense_Mutation	SNP	G	TCGA-B6-A0WT-01A-11D-A10G-09		38061760	159960670	4	43217										
APC	0	genome.wustl.edu	37	chr5	112177345	112177345	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	tttcatgttgaagataccccAgtttgtttctcaagaaacag	7	8	2	3			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	112177345	112177345	A	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	silent	c.6054	p.P2018	0.325	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	115	0	0	57	36	38.71	-	-	-	G	112177345	A	G	112177345	2	3	456	1	0	0	0	0	0	0	0	1	764	175	7	5		5	APC	5	112177345	Silent	SNP	A	TCGA-B6-A0WT-01A-11D-A10G-09		112177345	68737915	5	43218										
N4BP3	0	genome.wustl.edu	37	chr5	177548592	177548592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	agacacaacttcggggcagcCgggcacaagcccaggctcag	13	14	1	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	177548592	177548592	C	T	SNP	N4BP3	ENST00000274605	human	ensembl	69_37n	1	known	missense	c.1225	p.R409W	1.000	pfam_Fez1	pfam_Fez1	-	no_errors	N4BP3	HGNC	ENSG00000145911	10	0	0	14	12	46.15	-	-	-	T	177548592	C	T	177548592	3	4	456	1	0	0	0	0	1	0	0	0	10185	643	23	1	1239	1	N4BP3	5	177548592	Missense_Mutation	SNP	C	TCGA-B6-A0WT-01A-11D-A10G-09	65371247	177548592	3366668	6	43219										
ARID1B	0	genome.wustl.edu	37	chr6	157454190	157454190	+	Frame_Shift_Del	DEL	T	T	-													0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	gcaggcacacaaagaaacccTcagatggctcagtatggacc							TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	6	157454190	157454190	T	-	DEL	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	frame_shift_del	c.2361	p.Q788fs	0.997	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	73	0	0	31	22	40.74	-	-	-	-	157454190	T	-	157454190	7	5	456	1	0	1	0	1	0	0	0	0	916	1538	54	0	2430	0	ARID1B	6	157454190	Frame_Shift_Del	DEL	T	TCGA-B6-A0WT-01A-11D-A10G-09		157454190	13660877	7	43220										
NSUN5	0	genome.wustl.edu	37	chr7	72718330	72718330	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	tcctcagccagttcacagcaAgagacgccagcccgggccag	11	16	2	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	72718330	72718330	A	G	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.831	p.S277	0.005	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	11	0	0	27	8	22.86	-	-	-	G	72718330	A	G	72718330	2	3	456	1	0	0	0	0	0	0	0	1	10754	59	3	5		5	NSUN5	7	72718330	Silent	SNP	A	TCGA-B6-A0WT-01A-11D-A10G-09		72718330	86420333	8	43221										
IFRD1	0	genome.wustl.edu	37	chr7	112112289	112112289	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	gttaggaacgggattttccaAcagaaaccattaaatttggt	9	6	0	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	112112289	112112289	A	G	SNP	IFRD1	ENST00000005558	human	ensembl	69_37n	1	known	missense	c.1057	p.T353A	1.000	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652	195	0	0	90	55	37.93	-	-	-	G	112112289	A	G	112112289	3	3	456	1	0	0	0	0	1	0	0	0	7607	43	2	5	1095	5	IFRD1	7	112112289	Missense_Mutation	SNP	A	TCGA-B6-A0WT-01A-11D-A10G-09	39393959	112112289	47026374	9	43222										
COL14A1	0	genome.wustl.edu	37	chr8	121282319	121282319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	ggtatttatggtggatggatCctggagcattggagatgaaa	15	3	0	2			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	8	121282319	121282319	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.3119	p.S1040F	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	176	0	0	119	55	31.61	-	-	-	T	121282319	C	T	121282319	3	4	456	1	0	0	0	0	1	0	0	0	3701	855	30	2	3217	2	COL14A1	8	121282319	Missense_Mutation	SNP	C	TCGA-B6-A0WT-01A-11D-A10G-09		121282319	25081703	10	43223										
LRP4	0	genome.wustl.edu	37	chr11	46916348	46916348	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	cggatgtcgatgcgattggcGaacagcagcacaggctctgg	15	10	1	0			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	46916348	46916348	G	A	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	silent	c.1332	p.F444	1.000	superfamily_Growth_fac_rcpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	23	0	0	41	35	46.05	-	-	-	A	46916348	G	A	46916348	2	1	456	1	0	0	0	0	0	0	0	1	9025	1049	37	1		1	LRP4	11	46916348	Silent	SNP	G	TCGA-B6-A0WT-01A-11D-A10G-09		46916348	88090168	11	43224										
OR5W2	0	genome.wustl.edu	37	chr11	55681318	55681318	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	gttccctggaaaattgcaacCgcagataagtgggaagtgca	12	8	0	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	55681318	55681318	C	T	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	silent	c.741	p.A247	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	122	0	0	74	45	37.82	-	-	-	T	55681318	C	T	55681318	2	4	456	1	0	0	0	0	0	0	0	1	11258	639	23	1		1	OR5W2	11	55681318	Silent	SNP	C	TCGA-B6-A0WT-01A-11D-A10G-09	8764970	55681318	79325198	12	43225										
ALG10	0	genome.wustl.edu	37	chr12	34177061	34177061	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	ggcaacttctatttactataTttgcttttctgcaaggtaca	6	8	2	0			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	34177061	34177061	T	G	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	1	known	nonsense	c.336	p.Y112*	0.999	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	395	0	0	191	78	29	-	-	-	G	34177061	T	G	34177061	4	3	456	1	0	0	0	0	0	1	0	0	511	1500	52	5	342	5	ALG10	12	34177061	Nonsense_Mutation	SNP	T	TCGA-B6-A0WT-01A-11D-A10G-09		34177061	99674834	13	43226										
RHEBL1	0	genome.wustl.edu	37	chr12	49459216	49459216	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	ttcaactgcctgtacctctcTggaagcaaatttgggacata	8	10	2	0			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	49459216	49459216	T	C	SNP	RHEBL1	ENST00000301068	human	ensembl	69_37n	-1	known	splice_site	c.381-2	e7-2	0.997	-	-	-	no_errors	RHEBL1	HGNC	ENSG00000167550	27	0	0	38	32	45.71	-	-	-	C	49459216	T	C	49459216	5	2	456	1	0	0	0	0	0	0	1	0	13413	1594	55	5	180	5	RHEBL1	12	49459216	Splice_Site	SNP	T	TCGA-B6-A0WT-01A-11D-A10G-09	15282155	49459216	84392679	14	43227										
ESR2	0	genome.wustl.edu	37	chr14	64694310	64694310	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	cttcattccaaatgaggtgaGtgtttgagaggccttttctg	11	7	2	3			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	64694310	64694310	G	C	SNP	ESR2	ENST00000353772	human	ensembl	69_37n	-1	known	missense	c.1429	p.L477V	0.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	97	0	0	59	32	35.16	-	-	-	C	64694310	G	C	64694310	3	2	456	1	0	0	0	0	1	0	0	0	5294	1029	36	4	62	4	ESR2	14	64694310	Missense_Mutation	SNP	G	TCGA-B6-A0WT-01A-11D-A10G-09		64694310	42655230	15	43228										
ENTPD5	0	genome.wustl.edu	37	chr14	74436746	74436746	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	ctgtctgcaaagccaaagccAtcctttaacagggctgtgat	9	11	1	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	74436746	74436746	A	G	SNP	ENTPD5	ENST00000555829	human	ensembl	69_37n	-1	putative	missense	c.191	p.M64T	0.756	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ENTPD5	HGNC	ENSG00000187097	67	0	0	59	28	32.18	-	-	-	G	74436746	A	G	74436746	3	3	456	1	0	0	0	0	1	0	0	0	5179	214	8	5	127	5	ENTPD5	14	74436746	Missense_Mutation	SNP	A	TCGA-B6-A0WT-01A-11D-A10G-09	9742436	74436746	32912794	16	43229										
EXOC7	0	genome.wustl.edu	37	chr17	74084953	74084953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	gtgtcgcacaatggccttccGggcagcagacacgatgttct	12	12	1	1			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	17	74084953	74084953	G	A	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.1252	p.R418W	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	10	0	0	23	8	25.81	-	-	-	A	74084953	G	A	74084953	3	1	456	1	0	0	0	0	1	0	0	0	5346	1115	39	1	999	1	EXOC7	17	74084953	Missense_Mutation	SNP	G	TCGA-B6-A0WT-01A-11D-A10G-09		74084953	7110257	17	43230										
SUPT5H	0	genome.wustl.edu	37	chr19	39949655	39949655	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.929053217008367	0.954545454545455	0	1.09090909090909	1	1	0	cgtgctccagggaccagcgaGaagaagaactgggcgagtat	15	9	0	3			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	19	39949655	39949655	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.400	p.E134K	1.000	pfam_Spt5_N,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	35	0	0	50	9	15.25	-	-	-	A	39949655	G	A	39949655	3	1	456	1	0	0	0	0	1	0	0	0	15490	943	33	2	422	2	SUPT5H	19	39949655	Missense_Mutation	SNP	G	TCGA-B6-A0WT-01A-11D-A10G-09		39949655	19179328	18	43231										
VPS13D	0	genome.wustl.edu	37	chr1	12331106	12331106	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gctgaagctgcccgaagacaAtataacaagctgaagatgca	10	9	0	4			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	1	12331106	12331106	A	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	silent	c.2028	p.Q676	0.998	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	170	0	0	135	104	43.33	-	-	-	G	12331106	A	G	12331106	2	3	457	1	0	0	0	0	0	0	0	1	17289	98	4	5		5	VPS13D	1	12331106	Silent	SNP	A	TCGA-B6-A0WV-01A-11D-A10G-09		12331106	236919515	1	43232										
VSIG8	0	genome.wustl.edu	37	chr1	159827578	159827580	+	In_Frame_Del	DEL	TGA	TGA	-													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gactcctggtaggacagctcTgagtggtagctgtgctggga							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	1	159827578	159827580	TGA	-	DEL	VSIG8	ENST00000368100	human	ensembl	69_37n	-1	known	in_frame_del	c.609_607	p.S203in_frame_del	0.909:0.997:1.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG8	HGNC	ENSG00000243284	144	0	0	193	38	15.64	-	-	-	-	159827580	TGA	-	159827578	7	5	457	1	0	1	0	1	0	0	0	0	17323	1567	55	0	651	0	VSIG8	1	159827578	In_Frame_Del	DEL	TGA	TCGA-B6-A0WV-01A-11D-A10G-09	147496472	159827578	89423043	2	43233										
HADHA	0	genome.wustl.edu	37	chr2	26432729	26432729	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	agtcccatcaaggcctttgaTtctttggtcattacaagctc	7	11	3	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	2	26432729	26432729	T	C	SNP	HADHA	ENST00000380649	human	ensembl	69_37n	-1	known	silent	c.1005	p.E335	1.000	tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754	284	0	0	266	111	29.44	-	-	-	C	26432729	T	C	26432729	2	2	457	1	0	0	0	0	0	0	0	1	6994	1490	52	5		5	HADHA	2	26432729	Silent	SNP	T	TCGA-B6-A0WV-01A-11D-A10G-09		26432729	216766644	3	43234										
PHLDB2	0	genome.wustl.edu	37	chr3	111632538	111632538	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gcgagtcctcttatctaagtAtcctaccaaaggtaatgttg	8	9	2	0			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	3	111632538	111632538	A	G	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.1708	p.I570V	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	287	0	0	163	111	40.51	-	-	-	G	111632538	A	G	111632538	3	3	457	1	0	0	0	0	1	0	0	0	11926	449	16	5	1799	5	PHLDB2	3	111632538	Missense_Mutation	SNP	A	TCGA-B6-A0WV-01A-11D-A10G-09		111632538	86389892	4	43235										
CCDC14	0	genome.wustl.edu	37	chr3	123667564	123667564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	aacctttggagggcagggtgGccgctgaagtgaccagactg	16	9	0	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	3	123667564	123667564	G	A	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.802	p.P268S	0.040	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	348	0	0	183	89	32.36	-	-	-	A	123667564	G	A	123667564	3	1	457	1	0	0	0	0	1	0	0	0	2798	1203	42	4	2087	4	CCDC14	3	123667564	Missense_Mutation	SNP	G	TCGA-B6-A0WV-01A-11D-A10G-09	12035026	123667564	74354866	5	43236										
HERC6	0	genome.wustl.edu	37	chr4	89304502	89304502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	tgaagggcagctggggattgGagaattcaaggaaataagtt	15	3	1	2			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	4	89304502	89304502	G	A	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.329	p.G110E	0.824	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	327	0	0	161	123	43.16	-	-	-	A	89304502	G	A	89304502	3	1	457	1	0	0	0	0	1	0	0	0	7113	1174	41	2	132	2	HERC6	4	89304502	Missense_Mutation	SNP	G	TCGA-B6-A0WV-01A-11D-A10G-09		89304502	101849774	6	43237										
FRG1	0	genome.wustl.edu	37	chr4	190876224	190876224	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gtctggctatggaaaatatcTtggtataaattcagatggac	10	5	3	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	4	190876224	190876224	T	G	SNP	FRG1	ENST00000226798	human	ensembl	69_37n	1	known	missense	c.350	p.L117R	1.000	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536	291	0	0	361	61	14.45	-	-	-	G	190876224	T	G	190876224	3	3	457	1	0	0	0	0	1	0	0	0	6095	1609	56	5	368	5	FRG1	4	190876224	Missense_Mutation	SNP	T	TCGA-B6-A0WV-01A-11D-A10G-09	101571722	190876224	278052	7	43238										
PHACTR1	0	genome.wustl.edu	37	chr6	13206102	13206102	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gtgaaactgtcgcctccgctAcctccaaagaaagtcatgat	8	12	1	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	6	13206102	13206102	A	T	SNP	PHACTR1	ENST00000415087	human	ensembl	69_37n	1	known	missense	c.224	p.Y75F	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHACTR1	HGNC	ENSG00000112137	68	0	0	45	84	65.12	-	-	-	T	13206102	A	T	13206102	3	4	457	1	0	0	0	0	1	0	0	0	11883	378	14	5	742	5	PHACTR1	6	13206102	Missense_Mutation	SNP	A	TCGA-B6-A0WV-01A-11D-A10G-09		13206102	157908965	8	43239										
GTPBP2	0	genome.wustl.edu	37	chr6	43593250	43593250	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	aggactccaagcagagttgaCttcccagagtccacattccc	8	14	0	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	6	43593250	43593250	C	G	SNP	GTPBP2	ENST00000307126	human	ensembl	69_37n	-1	known	missense	c.555	p.K185N	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	GTPBP2	HGNC	ENSG00000172432	96	0	0	35	73	66.97	-	-	-	G	43593250	C	G	43593250	3	3	457	1	0	0	0	0	1	0	0	0	6931	564	20	4	1285	4	GTPBP2	6	43593250	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09	30387148	43593250	127521817	9	43240										
ZNF292	0	genome.wustl.edu	37	chr6	87964453	87964456	+	Frame_Shift_Del	DEL	TATC	TATC	-													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	agaaaatactgaagtgaaaaTatctatttgcaagaccattt							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	TATC	TATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	6	87964453	87964456	TATC	-	DEL	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	frame_shift_del	c.1106_1109	p.S370fs	1.000:0.995:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	276	0	0	113	133	52.57	-	-	-	-	87964456	TATC	-	87964453	7	5	457	1	0	1	0	1	0	0	0	0	17922	1406	49	0	1136	0	ZNF292	6	87964453	Frame_Shift_Del	DEL	TATC	TCGA-B6-A0WV-01A-11D-A10G-09	44371203	87964453	83150614	10	43241										
MLL3	0	genome.wustl.edu	37	chr7	151882645	151882646	+	Frame_Shift_Ins	INS	-	-	A													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	ggagtttcttaaaataccacINSatatggtgctctttcttgtg							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	7	151882645	151882646	-	A	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5080_5079	p.V1693fs	1.000:1.000	superfamily_HMG_superfamily,smart_HMG_superfamily	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	313	0	0	283	139	32.94	-	-	-	A	151882646	-	A	151882645	7	5	457	1	0	1	1	0	0	0	0	0	9693	478	17	0	9759	0	MLL3	7	151882645	Frame_Shift_Ins	INS	-	TCGA-B6-A0WV-01A-11D-A10G-09		151882645	7256018	11	43242										
GATA3	0	genome.wustl.edu	37	chr10	8111512	8111513	+	Frame_Shift_Ins	INS	-	-	T													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	ctctggaggaggaatgccaaINStggggaccctgtctgcaatg							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	10	8111512	8111513	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1001_1002	p.G335fs	1.000:0.859	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	215	0	0	279	67	19.36	-	-	-	T	8111513	-	T	8111512	7	5	457	1	0	1	1	0	0	0	0	0	6305	101	4	0	1015	0	GATA3	10	8111512	Frame_Shift_Ins	INS	-	TCGA-B6-A0WV-01A-11D-A10G-09		8111512	127423235	12	43243										
OR5J2	0	genome.wustl.edu	37	chr11	55944758	55944758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	catttcctacatcttcattgCttttgctagcctaaggatcc	5	12	2	0			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	11	55944758	55944758	C	T	SNP	OR5J2	ENST00000312298	human	ensembl	69_37n	1	known	missense	c.665	p.A222V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	174	0	0	216	157	41.98	-	-	-	T	55944758	C	T	55944758	3	4	457	1	0	0	0	0	1	0	0	0	11238	797	28	4	667	4	OR5J2	11	55944758	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09		55944758	79061758	13	43244										
PIWIL4	0	genome.wustl.edu	37	chr11	94308183	94308183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	agataaatatgggatatcttCtggtgatgctggaagtacct	11	5	2	2			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	11	94308183	94308183	C	G	SNP	PIWIL4	ENST00000299001	human	ensembl	69_37n	1	known	missense	c.185	p.S62C	0.973	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627	306	0	0	264	74	21.89	-	-	-	G	94308183	C	G	94308183	3	3	457	1	0	0	0	0	1	0	0	0	12034	913	32	2	195	2	PIWIL4	11	94308183	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09	38363425	94308183	40698333	14	43245										
KLRC1	0	genome.wustl.edu	37	chr12	10600155	10600155	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gtttgaaagccaaaccattcAttgtcacccatggatgatga	8	9	2	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	12	10600155	10600155	A	G	SNP	KLRC1	ENST00000359151	human	ensembl	69_37n	-1	known	missense	c.566	p.M189T	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC1	HGNC	ENSG00000134545	390	0	0	267	172	39.09	-	-	-	G	10600155	A	G	10600155	3	3	457	1	0	0	0	0	1	0	0	0	8468	217	8	5	143	5	KLRC1	12	10600155	Missense_Mutation	SNP	A	TCGA-B6-A0WV-01A-11D-A10G-09		10600155	123251740	15	43246										
STK38L	0	genome.wustl.edu	37	chr12	27470270	27470270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	acgagttgctcctttgtaggCatattccacagttgggacac	10	10	0	0			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	12	27470270	27470270	C	T	SNP	STK38L	ENST00000389032	human	ensembl	69_37n	1	known	missense	c.839	p.A280V	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38L	HGNC	ENSG00000211455	342	0	0	254	197	43.2	-	-	-	T	27470270	C	T	27470270	3	4	457	1	0	0	0	0	1	0	0	0	15395	724	25	4	873	4	STK38L	12	27470270	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09	16870115	27470270	106381625	16	43247										
PTPRB	0	genome.wustl.edu	37	chr12	70925884	70925884	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	ccataaatgtccacagagtcTttggagtctaactgctggag	10	9	2	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	12	70925884	70925884	T	C	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.6435	p.K2145	0.972	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	348	0	0	349	191	35.37	-	-	-	C	70925884	T	C	70925884	2	2	457	1	0	0	0	0	0	0	0	1	12879	1606	56	5		5	PTPRB	12	70925884	Silent	SNP	T	TCGA-B6-A0WV-01A-11D-A10G-09	43455614	70925884	62926011	17	43248										
TPCN1	0	genome.wustl.edu	37	chr12	113728784	113728784	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gtttgagctcacagttgtcaAcaactggtacatcatcatgg	9	9	4	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	12	113728784	113728784	A	T	SNP	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	missense	c.2156	p.N719I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	176	0	0	208	140	40.11	-	-	-	T	113728784	A	T	113728784	3	4	457	1	0	0	0	0	1	0	0	0	16491	43	2	5	2246	5	TPCN1	12	113728784	Missense_Mutation	SNP	A	TCGA-B6-A0WV-01A-11D-A10G-09	42802900	113728784	20123111	18	43249										
SMAD9	0	genome.wustl.edu	37	chr13	37453778	37453778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	gcctagcagtctcttcactgCggggctggtgaaggagaaga	15	9	2	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	13	37453778	37453778	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.49	p.A17T	1.000	superfamily_MAD_homology_MH1,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	85	0	0	28	72	72	-	-	-	T	37453778	C	T	37453778	3	4	457	1	0	0	0	0	1	0	0	0	14853	768	27	1	1378	1	SMAD9	13	37453778	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09		37453778	77716100	19	43250										
NALCN	0	genome.wustl.edu	37	chr13	101759935	101759935	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	atcgaagtatgggtggttctCtctgagttcctcttcttgca	10	9	4	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	13	101759935	101759935	C	G	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.2482	p.E828Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	507	1	0.2	156	332	67.89	-	-	-	G	101759935	C	G	101759935	3	3	457	1	0	0	0	0	1	0	0	0	10220	922	32	2	2826	2	NALCN	13	101759935	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09	64306157	101759935	13409943	20	43251										
ERO1L	0	genome.wustl.edu	37	chr14	53145184	53145184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	agatttaattccatcaggaaCttcatcctgaaaaagaaaaa	5	7	2	3			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	14	53145184	53145184	C	T	SNP	ERO1L	ENST00000395686	human	ensembl	69_37n	-1	known	missense	c.325	p.V109I	1.000	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	-	no_errors	ERO1L	HGNC	ENSG00000197930	154	0	0	120	75	38.46	-	-	-	T	53145184	C	T	53145184	3	4	457	1	0	0	0	0	1	0	0	0	5276	565	20	4	1133	4	ERO1L	14	53145184	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09		53145184	54204356	21	43252										
KCNJ16	0	genome.wustl.edu	37	chr17	68128759	68128759	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	aaaatggcaactgctcgaaaGagagcccaaaccattcgttt	8	10	0	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	17	68128759	68128759	G	A	SNP	KCNJ16	ENST00000283936	human	ensembl	69_37n	1	known	silent	c.531	p.K177	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ16	HGNC	ENSG00000153822	120	0	0	160	65	28.76	-	-	-	A	68128759	G	A	68128759	2	1	457	1	0	0	0	0	0	0	0	1	8104	933	33	2		2	KCNJ16	17	68128759	Silent	SNP	G	TCGA-B6-A0WV-01A-11D-A10G-09		68128759	13066451	22	43253										
CCDC159	0	genome.wustl.edu	37	chr19	11462767	11462768	+	Frame_Shift_Ins	INS	-	-	A													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	agatctcagagaacttggtgINSaacattcagaaaatgcagaa							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	19	11462767	11462768	-	A	INS	CCDC159	ENST00000458408	human	ensembl	69_37n	1	known	frame_shift_ins	c.525_526	p.N175fs	0.242:0.583	NULL	NULL	-	no_errors	CCDC159	HGNC	ENSG00000183401	253	0	0	203	109	34.94	-	-	-	A	11462768	-	A	11462767	7	5	457	1	0	1	1	0	0	0	0	0	2817	1277	45	0	551	0	CCDC159	19	11462767	Frame_Shift_Ins	INS	-	TCGA-B6-A0WV-01A-11D-A10G-09		11462767	47666216	23	43254										
KCNJ15	0	genome.wustl.edu	37	chr21	39671581	39671581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	aaccattggctatggagtccGttccatcacagaggaatgtc	10	10	1	1			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	21	39671581	39671581	G	A	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.398	p.R133H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	117	1	0.84	177	47	20.89	-	-	-	A	39671581	G	A	39671581	3	1	457	1	0	0	0	0	1	0	0	0	8103	1145	40	1	400	1	KCNJ15	21	39671581	Missense_Mutation	SNP	G	TCGA-B6-A0WV-01A-11D-A10G-09		39671581	8458314	24	43255										
SERPIND1	0	genome.wustl.edu	37	chr22	21138494	21138494	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	cctcgaagcgcaactgacacCccgggtggtggagagatggc	15	12	0	2			TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	22	21138494	21138494	C	G	SNP	SERPIND1	ENST00000215727	human	ensembl	69_37n	1	known	missense	c.1124	p.P375R	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPIND1	HGNC	ENSG00000099937	70	0	0	87	61	41.22	-	-	-	G	21138494	C	G	21138494	3	3	457	1	0	0	0	0	1	0	0	0	14198	623	22	4	1130	4	SERPIND1	22	21138494	Missense_Mutation	SNP	C	TCGA-B6-A0WV-01A-11D-A10G-09		21138494	30166072	25	43256										
KCND1	0	genome.wustl.edu	37	chrX	48826456	48826458	+	In_Frame_Del	DEL	AGA	AGA	-													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	ctcgcctgagtcagcatcgtAgaagaattccttctccgagc							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	X	48826456	48826458	AGA	-	DEL	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	in_frame_del	c.223_221	p.F74in_frame_del	1.000:1.000:1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	37	0	0	71	31	30.1	-	-	-	-	48826458	AGA	-	48826456	7	5	457	1	0	1	0	1	0	0	0	0	8072	420	15	0	1744	0	KCND1	23	48826456	In_Frame_Del	DEL	AGA	TCGA-B6-A0WV-01A-11D-A10G-09		48826456	106444104	26	43257										
UBE2A	0	genome.wustl.edu	37	chrX	118715485	118715485	+	Frame_Shift_Del	DEL	C	C	-													0.111111111111111	3	0.683080497494884	1.44318181818182	2.88636363636364	0.721590909090909	1	1	0	cacaggaacatttaaacttaCaatagaattcactgaagaat							TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b92107c5-c46f-4606-b4e9-2dab55ca4e9c	ea0de699-16b8-468d-ab85-223eb3880566	X	118715485	118715485	C	-	DEL	UBE2A	ENST00000371558	human	ensembl	69_37n	1	known	frame_shift_del	c.167	p.T56fs	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2A	HGNC	ENSG00000077721	212	0	0	155	107	38.91	-	-	-	-	118715485	C	-	118715485	7	5	457	1	0	1	0	1	0	0	0	0	16941	478	17	0	181	0	UBE2A	23	118715485	Frame_Shift_Del	DEL	C	TCGA-B6-A0WV-01A-11D-A10G-09	69889029	118715485	36555075	27	43258										
LBR	0	genome.wustl.edu	37	chr1	225600340	225600340	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gcagatgtcaggataaaagcAtagaatcctttaaaaaaaaa	7	5	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	1	225600340	225600340	A	G	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	silent	c.900	p.Y300	0.955	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	70	0	0	76	28	26.92	-	-	-	G	225600340	A	G	225600340	2	3	458	1	0	0	0	0	0	0	0	1	8706	224	8	5		5	LBR	1	225600340	Silent	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09		225600340	23650281	1	43259										
SMARCC1	0	genome.wustl.edu	37	chr3	47719705	47719705	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tacctcatcacagcacacacAtctccagtcaagttcctccg	4	17	4	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	47719705	47719705	A	G	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	silent	c.1554	p.D518	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	330	0	0	85	123	59.13	-	-	-	G	47719705	A	G	47719705	2	3	458	1	0	0	0	0	0	0	0	1	14864	214	8	5		5	SMARCC1	3	47719705	Silent	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09		47719705	150302725	2	43260										
KIAA1524	0	genome.wustl.edu	37	chr3	108276094	108276094	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	agttccatgtaggattttgtCagtatttcatgttcttcagc	8	7	4	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	108276094	108276094	C	T	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	silent	c.2181	p.L727	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	500	0	0	250	137	35.4	-	-	-	T	108276094	C	T	108276094	2	4	458	1	0	0	0	0	0	0	0	1	8291	813	29	2		2	KIAA1524	3	108276094	Silent	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	60556389	108276094	89746336	3	43261										
KIAA2018	0	genome.wustl.edu	37	chr3	113377798	113377798	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	ttgtagattaggggtagaatCtttggattttgctgcggcca	13	5	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	113377798	113377798	C	A	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.2731	p.D911Y	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	433	0	0	250	147	36.93	-	-	-	A	113377798	C	A	113377798	3	1	458	1	0	0	0	0	1	0	0	0	8320	913	32	2	4010	2	KIAA2018	3	113377798	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	5101704	113377798	84644632	4	43262										
KALRN	0	genome.wustl.edu	37	chr3	124017740	124017740	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	acctccagacgcagcacaatCactttgccatgaactccatg	6	15	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	124017740	124017740	C	A	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.1066	p.H356N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	400	1	0.25	219	123	35.96	-	-	-	A	124017740	C	A	124017740	3	1	458	1	0	0	0	0	1	0	0	0	8029	826	29	2	1088	2	KALRN	3	124017740	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	10639942	124017740	74004690	5	43263										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	236	0	0	139	69	33.17	-	-	-	G	178952085	A	G	178952085	3	3	458	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09	54934345	178952085	19070345	6	43264										
CASP6	0	genome.wustl.edu	37	chr4	110610590	110610590	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gtctttgcaaaagtccactcGgcgctgagaaactttcctgt	9	11	1	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	4	110610590	110610590	G	A	SNP	CASP6	ENST00000265164	human	ensembl	69_37n	-1	known	nonsense	c.778	p.R260*	0.997	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP6	HGNC	ENSG00000138794	195	0	0	115	70	37.84	-	-	-	A	110610590	G	A	110610590	4	1	458	1	0	0	0	0	0	1	0	0	2700	1124	39	1	107	1	CASP6	4	110610590	Nonsense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		110610590	80543686	7	43265										
RIOK2	0	genome.wustl.edu	37	chr5	96503665	96503668	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tcctttgtgtagccactggcAgaaacctccacatcaagagt							TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	AGAA	AGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	96503665	96503668	AGAA	-	DEL	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	frame_shift_del	c.903_900	p.S301fs	0.995:1.000:0.999:0.991	NULL	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	83	0	0	39	20	33.9	-	-	-	-	96503668	AGAA	-	96503665	7	5	458	1	0	1	0	1	0	0	0	0	13464	175	7	0	795	0	RIOK2	5	96503665	Frame_Shift_Del	DEL	AGAA	TCGA-B6-A0WW-01A-11D-A10G-09		96503665	84411595	8	43266										
KCNN2	0	genome.wustl.edu	37	chr5	113698868	113698868	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gccctgttcgaaaagcgcaaGcggctcagcgactacgcgct	12	14	1	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	113698868	113698868	G	C	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	1	known	missense	c.396	p.K132N	1.000	pfam_K_chnl_Ca-activ_SK,prints_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	33	0	0	13	14	51.85	-	-	-	C	113698868	G	C	113698868	3	2	458	1	0	0	0	0	1	0	0	0	8133	962	34	4	398	4	KCNN2	5	113698868	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	17195203	113698868	67216392	9	43267										
HSPA9	0	genome.wustl.edu	37	chr5	137892185	137892185	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cttcagtgatgcctgctgaaGagaggatgctgcctgtctaa	12	9	2	3			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	137892185	137892185	G	C	SNP	HSPA9	ENST00000297185	human	ensembl	69_37n	-1	known	missense	c.1918	p.L640V	1.000	pfam_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013	518	0	0	331	174	34.32	-	-	-	C	137892185	G	C	137892185	3	2	458	1	0	0	0	0	1	0	0	0	7470	942	33	2	129	2	HSPA9	5	137892185	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	24193317	137892185	43023075	10	43268										
PEX7	0	genome.wustl.edu	37	chr6	137147540	137147540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cacctgtagtggcgatggctCgctgcagctctgggacactg	14	12	1	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	6	137147540	137147540	C	G	SNP	PEX7	ENST00000318471	human	ensembl	69_37n	1	known	missense	c.272	p.S91W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357	210	0	0	153	90	37.04	-	-	-	G	137147540	C	G	137147540	3	3	458	1	0	0	0	0	1	0	0	0	11825	893	31	3	282	3	PEX7	6	137147540	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		137147540	33967527	11	43269										
C6orf118	0	genome.wustl.edu	37	chr6	165706931	165706931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cctttgcagactgcagcaatGccacctccatctccagttca	6	16	2	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	6	165706931	165706931	G	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.1091	p.A364E	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	409	1	0.24	206	114	35.62	-	-	-	T	165706931	G	T	165706931	3	4	458	1	0	0	0	0	1	0	0	0	2344	1319	46	4	334	4	C6orf118	6	165706931	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	28559391	165706931	5408136	12	43270										
UNCX	0	genome.wustl.edu	37	chr7	1273287	1273287	+	Missense_Mutation	SNP	G	G	A													0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	atcccgacgtgttcatgcgcGaggcgctggcgctgcgccta							TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	7	1273287	1273287	G	A	SNP	UNCX	ENST00000316333	human	ensembl	69_37n	1	known	missense	c.406	p.E136K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	UNCX	HGNC	ENSG00000164853	45	0	0	31	21	40.38	-	-	-	A	1273287	G	A	1273287	3	1	458	1	0	0	0	0	1	0	0	0	17095	1059	37	1	412	1	UNCX	7	1273287	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		1273287	157865376	13	43271	350	2								
UNCX	0	genome.wustl.edu	37	chr7	1273288	1273288	+	Missense_Mutation	SNP	A	A	C													0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tcccgacgtgttcatgcgcgAggcgctggcgctgcgcctag							TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	7	1273288	1273288	A	C	SNP	UNCX	ENST00000316333	human	ensembl	69_37n	1	known	missense	c.407	p.E136A	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	UNCX	HGNC	ENSG00000164853	47	0	0	32	21	39.62	-	-	-	C	1273288	A	C	1273288	3	2	458	1	0	0	0	0	1	0	0	0	17095	304	11	5	413	5	UNCX	7	1273288	Missense_Mutation	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09	1	1273288	157865375	14	43272	350	2								
CSMD3	0	genome.wustl.edu	37	chr8	113237127	113237127	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cattgttattttcatgaactGaacatcctgtatactgtgtt	6	7	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	8	113237127	113237127	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.10997	p.S3666L	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	1062	0	0	1579	285	15.27	-	-	-	A	113237127	G	A	113237127	3	1	458	1	0	0	0	0	1	0	0	0	3978	1294	45	2	130	2	CSMD3	8	113237127	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		113237127	33126895	15	43273										
PTEN	0	genome.wustl.edu	37	chr10	89653844	89653844	+	Frame_Shift_Del	DEL	A	A	-													0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gacttgaaggcgtatacaggAacaatattgatgatgtagta							TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	10	89653844	89653844	A	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.142	p.N48fs	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	301	0	0	212	111	34.15	-	-	-	-	89653844	A	-	89653844	7	5	458	1	0	1	0	1	0	0	0	0	12818	246	9	0	148	0	PTEN	10	89653844	Frame_Shift_Del	DEL	A	TCGA-B6-A0WW-01A-11D-A10G-09		89653844	45880903	16	43274										
MUC5B	0	genome.wustl.edu	37	chr11	1266823	1266823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	actccaacatccgtgcggccGgaggggccgtctgtgagcag	15	13	1	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	1266823	1266823	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8722	p.G2908R	0.431	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	177	0	0	35	44	55.7	-	-	-	A	1266823	G	A	1266823	3	1	458	1	0	0	0	0	1	0	0	0	10051	1117	39	1	8844	1	MUC5B	11	1266823	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		1266823	133739693	17	43275										
BRSK2	0	genome.wustl.edu	37	chr11	1471018	1471018	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	acctccaggtctcggtccatCagcggtgcctcctcaggcct	10	17	3	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	1471018	1471018	C	T	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	silent	c.1377	p.I459	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	78	0	0	11	21	65.62	-	-	-	T	1471018	C	T	1471018	2	4	458	1	0	0	0	0	0	0	0	1	1532	816	29	2		2	BRSK2	11	1471018	Silent	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	204195	1471018	133535498	18	43276										
OR5L2	0	genome.wustl.edu	37	chr11	55595297	55595297	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	aatgagacactgctgttcctGgtggccactttgaatgagag	12	8	0	3			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	55595297	55595297	G	T	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	silent	c.603	p.L201	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	632	0	0	338	190	35.98	-	-	-	T	55595297	G	T	55595297	2	4	458	1	0	0	0	0	0	0	0	1	11244	1335	47	4		4	OR5L2	11	55595297	Silent	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	54124279	55595297	79411219	19	43277										
TPI1	0	genome.wustl.edu	37	chr12	6976710	6976710	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tgcgcgcagacactgaccttCagcgcctcggctccagcgcc	11	18	1	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	6976710	6976710	C	T	SNP	TPI1	ENST00000229270	human	ensembl	69_37n	1	known	nonsense	c.91	p.Q31*	0.995	NULL	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669	11	0	0	19	9	32.14	-	-	-	T	6976710	C	T	6976710	4	4	458	1	0	0	0	0	0	1	0	0	16499	827	29	2	93	2	TPI1	12	6976710	Nonsense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		6976710	126875185	20	43278										
SLCO1B3	0	genome.wustl.edu	37	chr12	21028168	21028168	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tcttttaactgtttctcctaGgcactatcagaataactcct	4	11	3	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	21028168	21028168	G	A	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	splice_site	c.728-1	e7-1	0.906	-	-	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	777	0	0	524	260	33.16	-	-	-	A	21028168	G	A	21028168	5	1	458	1	0	0	0	0	0	0	1	0	14813	1014	35	4	753	4	SLCO1B3	12	21028168	Splice_Site	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	14051458	21028168	112823727	21	43279										
LHX5	0	genome.wustl.edu	37	chr12	113905144	113905144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gacgcatgcgccgcggactcCggaagaaggcgtgcctccgg	16	14	0	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	113905144	113905144	C	T	SNP	LHX5	ENST00000261731	human	ensembl	69_37n	-1	known	missense	c.758	p.R253Q	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX5	HGNC	ENSG00000089116	54	0	0	46	7	13.21	-	-	-	T	113905144	C	T	113905144	3	4	458	1	0	0	0	0	1	0	0	0	8829	652	23	1	458	1	LHX5	12	113905144	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	92876976	113905144	19946751	22	43280										
CDKL1	0	genome.wustl.edu	37	chr14	50862547	50862547	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	tttgaaaacaactccataggAtccttctccaattttcccaa	3	12	1	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	14	50862547	50862547	A	T	SNP	CDKL1	ENST00000395834	human	ensembl	69_37n	-1	known	missense	c.43	p.S15T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL1	HGNC	ENSG00000100490	232	0	0	161	111	40.81	-	-	-	T	50862547	A	T	50862547	3	4	458	1	0	0	0	0	1	0	0	0	3182	333	12	5	1069	5	CDKL1	14	50862547	Missense_Mutation	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09		50862547	56486993	23	43281										
GRAMD2	0	genome.wustl.edu	37	chr15	72456002	72456002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gaaactgtctgtggagtccaCggatgatggagggatacaag	15	6	1	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	15	72456002	72456002	C	T	SNP	GRAMD2	ENST00000309731	human	ensembl	69_37n	-1	known	missense	c.697	p.V233M	0.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318	226	0	0	119	89	42.79	-	-	-	T	72456002	C	T	72456002	3	4	458	1	0	0	0	0	1	0	0	0	6801	536	19	1	383	1	GRAMD2	15	72456002	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		72456002	30075390	24	43282										
HMG20A	0	genome.wustl.edu	37	chr15	77759649	77759649	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	ctgcctcctgaggaaaaacaGgtaattgttcctattcctga	8	10	0	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	15	77759649	77759649	G	A	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	1	known	silent	c.450	p.Q150	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20A	HGNC	ENSG00000140382	118	0	0	73	40	35.4	-	-	-	A	77759649	G	A	77759649	2	1	458	1	0	0	0	0	0	0	0	1	7272	1014	35	4		4	HMG20A	15	77759649	Silent	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	5303647	77759649	24771743	25	43283										
SNRNP25	0	genome.wustl.edu	37	chr16	105793	105793	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gcagccgtggttgtagtgcaGagtgccacagtcctggacct	14	11	0	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	16	105793	105793	G	A	SNP	SNRNP25	ENST00000493672	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SNRNP25	HGNC	ENSG00000161981	223	0	0	141	78	35.62	-	-	-	A	105793	G	A	105793	5	1	458	1	0	0	0	0	0	0	1	0	14942	933	33	2	187	2	SNRNP25	16	105793	Splice_Site	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		105793	90248960	26	43284										
HS3ST2	0	genome.wustl.edu	37	chr16	22926628	22926628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	ctcatcactgacccggccggCgagatggggcgagtccagga	15	13	2	2			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	16	22926628	22926628	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	silent	c.849	p.G283	0.962	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	108	0	0	66	31	31	-	-	-	T	22926628	C	T	22926628	2	4	458	1	0	0	0	0	0	0	0	1	7415	755	27	1		1	HS3ST2	16	22926628	Silent	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09	22820835	22926628	67428125	27	43285										
MRC2	0	genome.wustl.edu	37	chr17	60767630	60767630	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	ctttccacatggagctgctgCtgggccacaaggaggcgcga	14	12	0	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	17	60767630	60767630	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	silent	c.3856	p.L1286	0.987	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	74	0	0	52	20	27.78	-	-	-	T	60767630	C	T	60767630	2	4	458	1	0	0	0	0	0	0	0	1	9830	796	28	4		4	MRC2	17	60767630	Silent	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		60767630	20427580	28	43286										
PIAS4	0	genome.wustl.edu	37	chr19	4037695	4037695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cagcacgggtggcggcggccCggtgggcagcatggagaatg	20	10	0	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	19	4037695	4037695	C	T	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	1	known	missense	c.1355	p.P452L	0.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	13	0	0	11	7	38.89	-	-	-	T	4037695	C	T	4037695	3	4	458	1	0	0	0	0	1	0	0	0	11952	652	23	1	1397	1	PIAS4	19	4037695	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		4037695	55091288	29	43287										
SNRPB	0	genome.wustl.edu	37	chr20	2451335	2451336	+	Frame_Shift_Ins	INS	-	-	TG													0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	agcctgtgccctccttaccaINStggtggcggttctgatggct							TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	2451335	2451336	-	TG	INS	SNRPB	ENST00000438552	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	1.000:1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835	118	0	0	70	31	30.69	-	-	-	TG	2451336	-	TG	2451335	7	5	458	1	0	1	1	0	0	0	0	0	14950	231	8	0	763	0	SNRPB	20	2451335	Frame_Shift_Ins	INS	-	TCGA-B6-A0WW-01A-11D-A10G-09		2451335	60574185	30	43288										
SLC9A8	0	genome.wustl.edu	37	chr20	48466163	48466163	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	atcaccctgtttgctgttttTgggacggcaatctccgcttt	9	11	2	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	48466163	48466163	T	G	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.480	p.F160L	0.995	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	671	0	0	363	218	37.52	-	-	-	G	48466163	T	G	48466163	3	3	458	1	0	0	0	0	1	0	0	0	14809	1809	63	5	502	5	SLC9A8	20	48466163	Missense_Mutation	SNP	T	TCGA-B6-A0WW-01A-11D-A10G-09	46014828	48466163	14559357	31	43289										
RTEL1	0	genome.wustl.edu	37	chr20	62322279	62322279	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gagcacagcgaacagcgggcGgggagccctggcgaggagca	19	11	0	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	62322279	62322279	G	C	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	silent	c.2535	p.A845	0.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	27	0	0	17	11	39.29	-	-	-	C	62322279	G	C	62322279	2	2	458	1	0	0	0	0	0	0	0	1	13806	1103	39	3		3	RTEL1	20	62322279	Silent	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	13856116	62322279	703241	32	43290										
ICOSLG	0	genome.wustl.edu	37	chr21	45656914	45656914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gtgacatcagggctcggttcCggtagcggctgtccacgttt	14	11	1	1			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	21	45656914	45656914	C	T	SNP	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	missense	c.242	p.R81Q	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	317	1	0.31	169	125	42.37	-	-	-	T	45656914	C	T	45656914	3	4	458	1	0	0	0	0	1	0	0	0	7541	652	23	1	686	1	ICOSLG	21	45656914	Missense_Mutation	SNP	C	TCGA-B6-A0WW-01A-11D-A10G-09		45656914	2472981	33	43291										
PLA2G3	0	genome.wustl.edu	37	chr22	31532969	31532969	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	actcgatttcccggggcccaAtctggtgctcacactggtcc	10	15	2	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	22	31532969	31532969	A	G	SNP	PLA2G3	ENST00000215885	human	ensembl	69_37n	-1	known	missense	c.1124	p.I375T	0.705	pfam_PLipase_A2_euk,superfamily_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2	-	no_errors	PLA2G3	HGNC	ENSG00000100078	82	0	0	31	31	50	-	-	-	G	31532969	A	G	31532969	3	3	458	1	0	0	0	0	1	0	0	0	12074	101	4	5	417	5	PLA2G3	22	31532969	Missense_Mutation	SNP	A	TCGA-B6-A0WW-01A-11D-A10G-09		31532969	19771597	34	43292										
CSAG1	0	genome.wustl.edu	37	chrX	151908833	151908833	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	cggggagaccaggtggactgGagtagactgtacagagacac	16	8	0	3			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	X	151908833	151908833	G	C	SNP	CSAG1	ENST00000370287	human	ensembl	69_37n	1	known	missense	c.72	p.W24C	0.000	NULL	NULL	-	no_errors	CSAG1	HGNC	ENSG00000198930	756	0	0	412	259	38.6	-	-	-	C	151908833	G	C	151908833	3	2	458	1	0	0	0	0	1	0	0	0	3956	1183	41	2	78	2	CSAG1	23	151908833	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09		151908833	3361727	35	43293										
BGN	0	genome.wustl.edu	37	chrX	152771478	152771478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.171428571428571	6	0.0787015218195996	2.75793650793651	1.93055555555556	3.01649305555556	0.118881118881119	0.59018139221185	0	gctccgcatccacgacaaccGcatccgcaaggtgcccaagg	10	17	0	0			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	X	152771478	152771478	G	A	SNP	BGN	ENST00000331595	human	ensembl	69_37n	1	known	missense	c.509	p.R170H	0.857	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492	93	0	0	46	27	36.99	-	-	-	A	152771478	G	A	152771478	3	1	458	1	0	0	0	0	1	0	0	0	1423	1087	38	1	519	1	BGN	23	152771478	Missense_Mutation	SNP	G	TCGA-B6-A0WW-01A-11D-A10G-09	862645	152771478	2499082	36	43294										
RAB42	0	genome.wustl.edu	37	chr1	28920328	28920328	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	ggtcatggccactcagggccCggacaaggtcatcttcctgc	12	14	4	0			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	1	28920328	28920328	C	A	SNP	RAB42	ENST00000373826	human	ensembl	69_37n	1	known	missense	c.17	p.P6Q	0.027	smart_Small_GTPase_Rab_type	pfam_Small_GTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060	20	0	0	13	7	35	-	-	-	A	28920328	C	A	28920328	3	1	459	1	0	0	0	0	1	0	0	0	13027	652	23	3	19	3	RAB42	1	28920328	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09		28920328	220330293	1	43295										
VANGL2	0	genome.wustl.edu	37	chr1	160389364	160389364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	aaggtcgtgcgctccaccgaCggcgccagccgcttctacaa	11	16	1	0			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	1	160389364	160389364	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	silent	c.765	p.D255	0.799	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	67	0	0	106	22	16.92	-	-	-	T	160389364	C	T	160389364	2	4	459	1	0	0	0	0	0	0	0	1	17217	535	19	1		1	VANGL2	1	160389364	Silent	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09	131469036	160389364	88861257	2	43296										
ZNF512	0	genome.wustl.edu	37	chr2	27825429	27825429	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	agctcaggtgcatgcgtgagGtaagggcccaaggacagcaa	15	9	1	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	2	27825429	27825429	G	T	SNP	ZNF512	ENST00000355467	human	ensembl	69_37n	1	known	splice_site	c.768+1	e8+1	1.000	-	-	-	no_errors	ZNF512	HGNC	ENSG00000243943	131	0	0	93	19	16.96	-	-	-	T	27825429	G	T	27825429	5	4	459	1	0	0	0	0	0	0	1	0	18052	1275	44	4	799	4	ZNF512	2	27825429	Splice_Site	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		27825429	215373944	3	43297										
SOCS5	0	genome.wustl.edu	37	chr2	46985893	46985893	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	attaagcccttcgaagaattCttcaaggagaaatcaaaatt	6	7	3	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	2	46985893	46985893	C	A	SNP	SOCS5	ENST00000306503	human	ensembl	69_37n	1	known	missense	c.224	p.S75Y	1.000	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150	123	1	0.81	78	34	30.36	-	-	-	A	46985893	C	A	46985893	3	1	459	1	0	0	0	0	1	0	0	0	15006	913	32	2	226	2	SOCS5	2	46985893	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09	19160464	46985893	196213480	4	43298										
BCL11A	0	genome.wustl.edu	37	chr2	60688385	60688385	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gcctcgctgaagtgctgcatGgagctgagcaccatgccctg	13	13	0	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	2	60688385	60688385	G	T	SNP	BCL11A	ENST00000335712	human	ensembl	69_37n	-1	known	silent	c.1662	p.S554	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866	15	0	0	12	6	33.33	-	-	-	T	60688385	G	T	60688385	2	4	459	1	0	0	0	0	0	0	0	1	1367	1335	47	4		4	BCL11A	2	60688385	Silent	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	13702492	60688385	182510988	5	43299										
MTX2	0	genome.wustl.edu	37	chr2	177195335	177195335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	ttagaggatgtagaccagtgCtgtcaagctctctctcaaag	10	9	3	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	2	177195335	177195335	C	G	SNP	MTX2	ENST00000249442	human	ensembl	69_37n	1	known	missense	c.567	p.C189W	1.000	superfamily_Glutathione-S-Trfase_C-like	pfam_Tom37/metaxin,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	MTX2	HGNC	ENSG00000128654	162	0	0	109	17	13.49	-	-	-	G	177195335	C	G	177195335	3	3	459	1	0	0	0	0	1	0	0	0	10040	805	28	4	601	4	MTX2	2	177195335	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09	116506950	177195335	66004038	6	43300										
IL17RE	0	genome.wustl.edu	37	chr3	9948409	9948409	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gaggaagctgctgcctcgtcGtcacctgtctgagaagagcc	13	12	2	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	3	9948409	9948409	G	C	SNP	IL17RE	ENST00000421412	human	ensembl	69_37n	1	known	missense	c.485	p.R162P	0.000	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701	165	1	0.6	105	43	29.05	-	-	-	C	9948409	G	C	9948409	3	2	459	1	0	0	0	0	1	0	0	0	7697	1145	40	3	404	3	IL17RE	3	9948409	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		9948409	188074021	7	43301										
DPCR1	0	genome.wustl.edu	37	chr6	30918798	30918798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	aaagcacagccaatgagaagAccacaccattcccagcagag	8	13	0	3			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	6	30918798	30918798	A	G	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	missense	c.2557	p.T853A	0.796	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	237	0	0	202	58	22.22	-	-	-	G	30918798	A	G	30918798	3	3	459	1	0	0	0	0	1	0	0	0	4747	275	10	5	2563	5	DPCR1	6	30918798	Missense_Mutation	SNP	A	TCGA-B6-A0WX-01A-11D-A10G-09		30918798	140196269	8	43302										
WISP3	0	genome.wustl.edu	37	chr6	112382347	112382347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gccctcctggagtgagcctgGtgagagatggctgtggatgc	17	9	0	3			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	6	112382347	112382347	G	A	SNP	WISP3	ENST00000361714	human	ensembl	69_37n	1	known	missense	c.256	p.V86M	1.000	pfam_IGFBP-like,smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761	170	0	0	124	30	19.48	-	-	-	A	112382347	G	A	112382347	3	1	459	1	0	0	0	0	1	0	0	0	17471	1261	44	4	262	4	WISP3	6	112382347	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	81463549	112382347	58732720	9	43303										
THSD7A	0	genome.wustl.edu	37	chr7	11582644	11582644	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gtacaaggtccccaagctgaCcaaggtgaaacttcacattc	8	12	1	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	7	11582644	11582644	C	G	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.1554	p.W518C	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	203	1	0.49	136	36	20.93	-	-	-	G	11582644	C	G	11582644	3	3	459	1	0	0	0	0	1	0	0	0	15974	508	18	4	3511	4	THSD7A	7	11582644	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09		11582644	147556019	10	43304										
NRF1	0	genome.wustl.edu	37	chr7	129350354	129350354	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	agtatagctcatcttgtaccAtcacagactgtagtccagac	7	11	3	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	7	129350354	129350354	A	G	SNP	NRF1	ENST00000393231	human	ensembl	69_37n	1	known	silent	c.906	p.P302	0.997	NULL	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459	176	0	0	122	46	27.38	-	-	-	G	129350354	A	G	129350354	2	3	459	1	0	0	0	0	0	0	0	1	10719	204	8	5		5	NRF1	7	129350354	Silent	SNP	A	TCGA-B6-A0WX-01A-11D-A10G-09	117767710	129350354	29788309	11	43305										
NPDC1	0	genome.wustl.edu	37	chr9	139934483	139934483	+	Frame_Shift_Del	DEL	G	G	-													0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	tcctcattctcctcatccgaGgaggccgtgtccagctcctt							TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	9	139934483	139934483	G	-	DEL	NPDC1	ENST00000371600	human	ensembl	69_37n	-1	known	frame_shift_del	c.1059	p.S354fs	0.020	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281	81	0	0	43	5	10.42	-	-	-	-	139934483	G	-	139934483	7	5	459	1	0	1	0	1	0	0	0	0	10645	987	35	0	160	0	NPDC1	9	139934483	Frame_Shift_Del	DEL	G	TCGA-B6-A0WX-01A-11D-A10G-09		139934483	1278948	12	43306										
BMS1	0	genome.wustl.edu	37	chr10	43292558	43292558	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	aagctttcaaagccttctcaAgtgagcagtggtcagaaact	9	9	3	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	10	43292558	43292558	A	G	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	silent	c.1866	p.Q622	0.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	56	0	0	34	12	26.09	-	-	-	G	43292558	A	G	43292558	2	3	459	1	0	0	0	0	0	0	0	1	1477	69	3	5		5	BMS1	10	43292558	Silent	SNP	A	TCGA-B6-A0WX-01A-11D-A10G-09		43292558	92242189	13	43307										
NRXN2	0	genome.wustl.edu	37	chr11	64427860	64427860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gctccaggcgtagggtgtcgGcagactccctggaagtggtg	17	10	0	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	11	64427860	64427860	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.2333	p.A778V	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	146	0	0	100	39	27.86	-	-	-	A	64427860	G	A	64427860	3	1	459	1	0	0	0	0	1	0	0	0	10739	1203	42	4	3126	4	NRXN2	11	64427860	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		64427860	70578656	14	43308										
PHLDB1	0	genome.wustl.edu	37	chr11	118498282	118498282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	catgtctgtgggctccagctAtgagaacacctctccagcct	9	14	2	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	11	118498282	118498282	A	G	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.743	p.Y248C	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	69	0	0	56	14	20	-	-	-	G	118498282	A	G	118498282	3	3	459	1	0	0	0	0	1	0	0	0	11925	449	16	5	761	5	PHLDB1	11	118498282	Missense_Mutation	SNP	A	TCGA-B6-A0WX-01A-11D-A10G-09	54070422	118498282	16508234	15	43309										
SRGAP1	0	genome.wustl.edu	37	chr12	64536255	64536255	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	acgttgccctcaggagctccGagcctcagattcgacgtagc	11	14	2	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	12	64536255	64536255	G	C	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.3061	p.E1021Q	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	127	0	0	74	36	32.73	-	-	-	C	64536255	G	C	64536255	3	2	459	1	0	0	0	0	1	0	0	0	15236	1059	37	3	3147	3	SRGAP1	12	64536255	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		64536255	69315640	16	43310										
CACNA1H	0	genome.wustl.edu	37	chr16	1251909	1251909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	cccgctggcagagccgctggCgcaagaaggtggaccccagt	15	14	0	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	16	1251909	1251909	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.1459	p.R487C	0.991	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	21	0	0	17	8	32	-	-	-	T	1251909	C	T	1251909	3	4	459	1	0	0	0	0	1	0	0	0	2570	768	27	1	1489	1	CACNA1H	16	1251909	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09		1251909	89102844	17	43311										
SF3B3	0	genome.wustl.edu	37	chr16	70595640	70595640	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	tttgcatcgggttttgcctcGgaacagtgtcccgagggcat	13	10	0	0			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	16	70595640	70595640	G	T	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	silent	c.2241	p.S747	0.989	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	111	0	0	81	25	23.58	-	-	-	T	70595640	G	T	70595640	2	4	459	1	0	0	0	0	0	0	0	1	14240	1103	39	3		3	SF3B3	16	70595640	Silent	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	69343731	70595640	19759113	18	43312										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	115	0	0	72	48	40	-	-	-	A	7577539	G	A	7577539	3	1	459	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		7577539	73617671	19	43313										
TP53	0	genome.wustl.edu	37	chr17	7579346	7579346	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	acttggctgtcccagaatgcAagaagcccagacggaaaccg	11	12	0	3			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	17	7579346	7579346	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.341	p.L114*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	49	0	0	47	9	16.07	-	-	-	T	7579346	A	T	7579346	4	4	459	1	0	0	0	0	0	1	0	0	16477	131	5	5	961	5	TP53	17	7579346	Nonsense_Mutation	SNP	A	TCGA-B6-A0WX-01A-11D-A10G-09	1807	7579346	73615864	20	43314										
TNRC6C	0	genome.wustl.edu	37	chr17	76083023	76083023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	ctcgtgaagcagccaccaccGccaccgcccccgccgcacct	8	23	0	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	17	76083023	76083023	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	silent	c.3642	p.P1214	0.999	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	58	0	0	62	14	18.42	-	-	-	A	76083023	G	A	76083023	2	1	459	1	0	0	0	0	0	0	0	1	16437	1074	38	1		1	TNRC6C	17	76083023	Silent	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	68503677	76083023	5112187	21	43315										
TAF4B	0	genome.wustl.edu	37	chr18	23847534	23847534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	tgacacctgttaaaaaattgGcacaaataggaactactgtg	8	7	0	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	18	23847534	23847534	G	T	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	missense	c.544	p.A182S	0.231	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	159	0	0	104	18	14.75	-	-	-	T	23847534	G	T	23847534	3	4	459	1	0	0	0	0	1	0	0	0	15619	1203	42	4	554	4	TAF4B	18	23847534	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09		23847534	54229714	22	43316										
B4GALT6	0	genome.wustl.edu	37	chr18	29210933	29210933	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	actacttacatatacatgtaTttatccagctttgcagcaaa	4	9	0	0			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	18	29210933	29210933	T	G	SNP	B4GALT6	ENST00000306851	human	ensembl	69_37n	-1	known	missense	c.765	p.K255N	0.986	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT6	HGNC	ENSG00000118276	86	0	0	71	20	21.98	-	-	-	G	29210933	T	G	29210933	3	3	459	1	0	0	0	0	1	0	0	0	1279	1490	52	5	399	5	B4GALT6	18	29210933	Missense_Mutation	SNP	T	TCGA-B6-A0WX-01A-11D-A10G-09	5363399	29210933	48866315	23	43317										
ZNF43	0	genome.wustl.edu	37	chr19	21991152	21991152	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	ttcacacttgtagggtttctCtccagtatgaatcctcttat	6	10	3	1			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	19	21991152	21991152	C	G	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.1687	p.E563Q	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	76	0	0	57	20	25.97	-	-	-	G	21991152	C	G	21991152	3	3	459	1	0	0	0	0	1	0	0	0	17999	922	32	2	746	2	ZNF43	19	21991152	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09		21991152	37137831	24	43318										
ZNRF3	0	genome.wustl.edu	37	chr22	29445235	29445235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	tggagaccagcaacctctcaCgtggtcggcagcagagggtg	15	11	1	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	22	29445235	29445235	C	T	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	missense	c.1066	p.R356C	0.619	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	52	0	0	35	22	38.6	-	-	-	T	29445235	C	T	29445235	3	4	459	1	0	0	0	0	1	0	0	0	18306	536	19	1	792	1	ZNRF3	22	29445235	Missense_Mutation	SNP	C	TCGA-B6-A0WX-01A-11D-A10G-09		29445235	21859331	25	43319										
EFHC2	0	genome.wustl.edu	37	chrX	44101421	44101421	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	gatgaggtgtgggcttgaggTctatgcagttacggagagaa	17	4	1	3			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	X	44101421	44101421	T	G	SNP	EFHC2	ENST00000333807	human	ensembl	69_37n	-1	known	missense	c.1226	p.D409A	0.000	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC2	HGNC	ENSG00000183690	291	0	0	183	52	22.13	-	-	-	G	44101421	T	G	44101421	3	3	459	1	0	0	0	0	1	0	0	0	4982	1667	58	5	1055	5	EFHC2	23	44101421	Missense_Mutation	SNP	T	TCGA-B6-A0WX-01A-11D-A10G-09		44101421	111169139	26	43320										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722506	64722506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	aacacgagtgcagagctatgGcccagaggattctaagcaag	12	9	1	2			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	X	64722506	64722506	G	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.1928	p.G643V	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	148	0	0	95	40	29.63	-	-	-	T	64722506	G	T	64722506	3	4	459	1	0	0	0	0	1	0	0	0	17658	1203	42	4	1946	4	ZC3H12B	23	64722506	Missense_Mutation	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	20621085	64722506	90548054	27	43321										
TEX11	0	genome.wustl.edu	37	chrX	69890251	69890251	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.994628167771038	0.623700623700624	1.62162162162162	0	1	1	0	tcaagttgttgcaaattcagGtaacagcaagccatgttcct	8	9	2	0			TCGA-B6-A0WX-01A-11D-A10G-09	TCGA-B6-A0WX-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47b5d831-5287-4f62-b17a-6e5eff2e4184	57c92229-f196-429c-8c85-874e2906a3d4	X	69890251	69890251	G	A	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	silent	c.1401	p.Y467	1.000	smart_TPR_repeat	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	177	0	0	105	27	20.45	-	-	-	A	69890251	G	A	69890251	2	1	459	1	0	0	0	0	0	0	0	1	15869	1256	44	4		4	TEX11	23	69890251	Silent	SNP	G	TCGA-B6-A0WX-01A-11D-A10G-09	5167745	69890251	85380309	28	43322										
CHD1L	0	genome.wustl.edu	37	chr1	146747774	146747775	+	Frame_Shift_Ins	INS	-	-	A													0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	gacttatgtccaggtctgttINSaaagttattcggctgattgg							TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	146747774	146747775	-	A	INS	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	frame_shift_ins	c.1392_1393	p.V465fs	0.964:0.999	pfam_HDA_complex_subunit-2/3,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	39	0	0	116	15	11.45	-	-	-	A	146747775	-	A	146747774	7	5	460	1	0	1	1	0	0	0	0	0	3353	1741	61	0	1446	0	CHD1L	1	146747774	Frame_Shift_Ins	INS	-	TCGA-B6-A0WY-01A-11D-A10G-09		146747774	102502847	1	43323										
OR2T33	0	genome.wustl.edu	37	chr1	248436504	248436504	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	gagggaaaaggggaccaggaGcattaacacacagcagatgt	14	7	0	1			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	248436504	248436504	G	C	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.613	p.L205V	0.020	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	52	0	0	128	19	12.93	-	-	-	C	248436504	G	C	248436504	3	2	460	1	0	0	0	0	1	0	0	0	11097	971	34	4	352	4	OR2T33	1	248436504	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09	101688730	248436504	814117	2	43324										
MST1	0	genome.wustl.edu	37	chr3	49726070	49726070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	agtcagaagcagcaggagtgGgagccaccccatccttctgg	13	12	2	1			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	3	49726070	49726070	G	A	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.55	p.P19S	0.908	NULL	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	14	0	0	45	14	23.73	-	-	-	A	49726070	G	A	49726070	3	1	460	1	0	0	0	0	1	0	0	0	9962	1232	43	4	2194	4	MST1	3	49726070	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		49726070	148296360	3	43325										
KIAA2026	0	genome.wustl.edu	37	chr9	5922013	5922013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	gtgaaaaagcagaggaagaaGttgttgattttggcaccaga	13	4	0	5			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	9	5922013	5922013	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.3983	p.T1328I	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	118	0	0	152	53	25.73	-	-	-	A	5922013	G	A	5922013	3	1	460	1	0	0	0	0	1	0	0	0	8322	1029	36	4	2332	4	KIAA2026	9	5922013	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		5922013	135291418	4	43326										
NRAP	0	genome.wustl.edu	37	chr10	115370292	115370292	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	aatgacacatgcaacacctcGcataaagttcaggtctgacc	7	12	2	2			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	10	115370292	115370292	G	A	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	nonsense	c.3553	p.R1185*	1.000	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	75	0	0	192	24	11.11	-	-	-	A	115370292	G	A	115370292	4	1	460	1	0	0	0	0	0	1	0	0	10711	1095	38	1	1711	1	NRAP	10	115370292	Nonsense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		115370292	20164455	5	43327										
ERP27	0	genome.wustl.edu	37	chr12	15068440	15068440	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	taccaacaattttccacttaGgaatccatcacaaaagtttt	3	10	1	0			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	15068440	15068440	G	A	SNP	ERP27	ENST00000266397	human	ensembl	69_37n	-1	known	silent	c.757	p.L253	0.972	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055	69	0	0	171	34	16.59	-	-	-	A	15068440	G	A	15068440	2	1	460	1	0	0	0	0	0	0	0	1	5278	991	35	4		4	ERP27	12	15068440	Silent	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		15068440	118783455	6	43328										
ENDOU	0	genome.wustl.edu	37	chr12	48110712	48110712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	cttggtttctggtctctgacGgggagatgcagttttggcta	14	7	2	2			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	48110712	48110712	G	A	SNP	ENDOU	ENST00000229003	human	ensembl	69_37n	-1	known	missense	c.389	p.P130L	0.222	pfam_Endoribonuclease_XendoU	pfam_Endoribonuclease_XendoU,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENDOU	HGNC	ENSG00000111405	77	0	0	288	36	11.11	-	-	-	A	48110712	G	A	48110712	3	1	460	1	0	0	0	0	1	0	0	0	5153	1116	39	1	744	1	ENDOU	12	48110712	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09	33042272	48110712	85741183	7	43329										
UGGT2	0	genome.wustl.edu	37	chr13	96555290	96555290	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	tgtaggattataaataatccCcaaccgactatgaacacttg	6	9	0	1			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	13	96555290	96555290	C	A	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.2320	p.G774W	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	117	0	0	82	31	27.43	-	-	-	A	96555290	C	A	96555290	3	1	460	1	0	0	0	0	1	0	0	0	17039	623	22	4	2306	4	UGGT2	13	96555290	Missense_Mutation	SNP	C	TCGA-B6-A0WY-01A-11D-A10G-09		96555290	18614588	8	43330										
HERC2	0	genome.wustl.edu	37	chr15	28389261	28389261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	cacaagctgccagcgaggccGcaaggcgagggacgatgctt	15	12	0	0			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	28389261	28389261	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.11261	p.A3754V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	16	0	0	60	15	19.74	-	-	-	A	28389261	G	A	28389261	3	1	460	1	0	0	0	0	1	0	0	0	7109	1087	38	1	3327	1	HERC2	15	28389261	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		28389261	74142131	9	43331										
FBN1	0	genome.wustl.edu	37	chr15	48766481	48766481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	tgaagccatcacctgtgtatCcttccttgcacagacagcgg	9	13	1	2			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	48766481	48766481	C	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.4181	p.G1394V	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	36	0	0	162	29	15.18	-	-	-	A	48766481	C	A	48766481	3	1	460	1	0	0	0	0	1	0	0	0	5748	855	30	2	4566	2	FBN1	15	48766481	Missense_Mutation	SNP	C	TCGA-B6-A0WY-01A-11D-A10G-09	20377220	48766481	53764911	10	43332										
TERF2IP	0	genome.wustl.edu	37	chr16	75690148	75690148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	tgaaatacatataactatgtGtgatgatgatccacccacac	6	9	0	4			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	75690148	75690148	G	A	SNP	TERF2IP	ENST00000300086	human	ensembl	69_37n	1	putative	missense	c.839	p.C280Y	1.000	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848	35	0	0	89	24	21.24	-	-	-	A	75690148	G	A	75690148	3	1	460	1	0	0	0	0	1	0	0	0	15858	1377	48	4	849	4	TERF2IP	16	75690148	Missense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		75690148	14664605	11	43333										
NCOR1	0	genome.wustl.edu	37	chr17	16049835	16049835	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	ctcccatgcctccatgagctGatcataacgctggcagattt	8	13	1	3			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	17	16049835	16049835	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.937	p.Q313*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	219	1	0.45	179	71	28.4	-	-	-	A	16049835	G	A	16049835	4	1	460	1	0	0	0	0	0	1	0	0	10307	1299	45	2	6533	2	NCOR1	17	16049835	Nonsense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		16049835	65145375	12	43334										
MLL4	0	genome.wustl.edu	37	chr19	36220093	36220093	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	1	0.968086459607629	0.797979797979798	0	0.897727272727273	1	1	0	tcttgtacatcgggcagaacGagtggacacacgtcaactgt	11	10	2	1			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	19	36220093	36220093	G	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	nonsense	c.4813	p.E1605*	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	12	0	0	98	28	22.05	-	-	-	T	36220093	G	T	36220093	4	4	460	1	0	0	0	0	0	1	0	0	9694	1059	37	3	4899	3	MLL4	19	36220093	Nonsense_Mutation	SNP	G	TCGA-B6-A0WY-01A-11D-A10G-09		36220093	22908890	13	43335										
PRDM16	0	genome.wustl.edu	37	chr1	3313062	3313062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	ctctccatcctagatttactAtaaagtcattaaggacattg	5	9	2	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	3313062	3313062	A	G	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	missense	c.581	p.Y194C	1.000	smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	62	0	0	34	6	15	-	-	-	G	3313062	A	G	3313062	3	3	461	1	0	0	0	0	1	0	0	0	12538	449	16	5	599	5	PRDM16	1	3313062	Missense_Mutation	SNP	A	TCGA-B6-A0WZ-01A-11D-A10G-09		3313062	245937559	1	43336										
VANGL1	0	genome.wustl.edu	37	chr1	116233968	116233968	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	accccaaatctcacaaatttGtccttcgcttacagtctgag	5	13	2	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	116233968	116233968	G	T	SNP	VANGL1	ENST00000310260	human	ensembl	69_37n	1	known	missense	c.1543	p.V515F	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218	70	0	0	51	33	39.29	-	-	-	T	116233968	G	T	116233968	3	4	461	1	0	0	0	0	1	0	0	0	17216	1377	48	4	1569	4	VANGL1	1	116233968	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	112920906	116233968	133016653	2	43337										
SMCP	0	genome.wustl.edu	37	chr1	152857160	152857160	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	caccccttaacatggagtctGagcccaactcaccgcaaact	6	16	2	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	152857160	152857160	G	A	SNP	SMCP	ENST00000368765	human	ensembl	69_37n	1	known	missense	c.262	p.E88K	0.000	NULL	NULL	-	no_errors	SMCP	HGNC	ENSG00000163206	41	0	0	27	6	18.18	-	-	-	A	152857160	G	A	152857160	3	1	461	1	0	0	0	0	1	0	0	0	14878	1291	45	2	264	2	SMCP	1	152857160	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	36623192	152857160	96393461	3	43338										
QSOX1	0	genome.wustl.edu	37	chr1	180147983	180147983	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	aacgaagagtacctggctctGatctttgaaaagggaggctc	12	8	2	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	180147983	180147983	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	silent	c.570	p.L190	1.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	99	0	0	104	14	11.86	-	-	-	A	180147983	G	A	180147983	2	1	461	1	0	0	0	0	0	0	0	1	12966	1277	45	2		2	QSOX1	1	180147983	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	27290823	180147983	69102638	4	43339										
PTPN14	0	genome.wustl.edu	37	chr1	214557335	214557335	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	aggggctcgctcacctcctgGagagactgatgaaccaccgg	13	13	1	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	214557335	214557335	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	silent	c.1863	p.L621	0.919	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	14	0	0	8	9	52.94	-	-	-	A	214557335	G	A	214557335	2	1	461	1	0	0	0	0	0	0	0	1	12864	1161	41	2		2	PTPN14	1	214557335	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	34409352	214557335	34693286	5	43340										
NEB	0	genome.wustl.edu	37	chr2	152466574	152466574	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	cataatcttgggatcatcttCaatgctctgggctccaatgt	8	10	5	0			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	2	152466574	152466574	C	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	nonsense	c.12079	p.E4027*	0.990	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	203	0	0	212	32	13.01	-	-	-	A	152466574	C	A	152466574	4	1	461	1	0	0	0	0	0	1	0	0	10374	835	29	2	14015	2	NEB	2	152466574	Nonsense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		152466574	90732799	6	43341										
IQCB1	0	genome.wustl.edu	37	chr3	121526220	121526220	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tgtagtatattctgtagcatCatcatgactgcagatcctat	7	8	3	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	3	121526220	121526220	C	A	SNP	IQCB1	ENST00000310864	human	ensembl	69_37n	-1	known	missense	c.558	p.M186I	0.144	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	196	0	0	150	22	12.79	-	-	-	A	121526220	C	A	121526220	3	1	461	1	0	0	0	0	1	0	0	0	7857	826	29	2	1274	2	IQCB1	3	121526220	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		121526220	76496210	7	43342										
CHRD	0	genome.wustl.edu	37	chr3	184100846	184100846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tgcccaacctgacagtccagGagatggactggctggtgctg	14	11	0	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	3	184100846	184100846	G	A	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	1	known	missense	c.1108	p.E370K	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	17	0	0	12	7	36.84	-	-	-	A	184100846	G	A	184100846	3	1	461	1	0	0	0	0	1	0	0	0	3401	1175	41	2	1146	2	CHRD	3	184100846	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	62574626	184100846	13921584	8	43343										
GPR125	0	genome.wustl.edu	37	chr4	22415369	22415369	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	agagagtcatcagttggtctGagttctcttttttgctttgg	11	6	4	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	4	22415369	22415369	G	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	silent	c.1878	p.L626	0.908	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	104	0	0	80	11	12.09	-	-	-	C	22415369	G	C	22415369	2	2	461	1	0	0	0	0	0	0	0	1	6689	1277	45	2		2	GPR125	4	22415369	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		22415369	168738907	9	43344										
ITGA1	0	genome.wustl.edu	37	chr5	52193332	52193332	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tttgaaatggaaatgtctcaGactggcttcagtgctcatta	9	7	3	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	52193332	52193332	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	silent	c.1137	p.Q379	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	79	0	0	81	12	12.9	-	-	-	A	52193332	G	A	52193332	2	1	461	1	0	0	0	0	0	0	0	1	7926	933	33	2		2	ITGA1	5	52193332	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		52193332	128721928	10	43345										
ZFYVE16	0	genome.wustl.edu	37	chr5	79733498	79733498	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	aattacctgacttttcctttCaggaagataagactgttata	6	7	1	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	79733498	79733498	C	T	SNP	ZFYVE16	ENST00000338008	human	ensembl	69_37n	1	known	nonsense	c.994	p.Q332*	0.935	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319	114	0	0	98	15	13.27	-	-	-	T	79733498	C	T	79733498	4	4	461	1	0	0	0	0	0	1	0	0	17760	827	29	2	1000	2	ZFYVE16	5	79733498	Nonsense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09	27540166	79733498	101181762	11	43346										
GPR98	0	genome.wustl.edu	37	chr5	90001311	90001311	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gaaccacatggagttttaaaTtttgctctttcatcaagatt	6	7	3	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	90001311	90001311	T	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.8481	p.N2827K	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	169	0	0	115	41	26.11	-	-	-	A	90001311	T	A	90001311	3	1	461	1	0	0	0	0	1	0	0	0	6772	1490	52	5	8627	5	GPR98	5	90001311	Missense_Mutation	SNP	T	TCGA-B6-A0WZ-01A-11D-A10G-09	10267813	90001311	90913949	12	43347										
ODZ2	0	genome.wustl.edu	37	chr5	167517656	167517656	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	agggaacgccggagcatacaGaccttggttcagaatgaagc	13	9	1	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	167517656	167517656	G	C	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.1593	p.Q531H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	117	0	0	79	11	12.22	-	-	-	C	167517656	G	C	167517656	3	2	461	1	0	0	0	0	1	0	0	0	10908	933	33	2	1623	2	ODZ2	5	167517656	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	77516345	167517656	13397604	13	43348										
SHPRH	0	genome.wustl.edu	37	chr6	146242419	146242419	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tattgctttcatagatcgctCtgtctcacttattgcccaga	6	11	3	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	6	146242419	146242419	C	G	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.3904	p.E1302Q	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	147	0	0	110	15	11.9	-	-	-	G	146242419	C	G	146242419	3	3	461	1	0	0	0	0	1	0	0	0	14380	922	32	2	1216	2	SHPRH	6	146242419	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		146242419	24872648	14	43349										
SNX13	0	genome.wustl.edu	37	chr7	17873801	17873801	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	ttcatctcgtagcatcaattCatataccttggtgaaataaa	5	8	4	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	17873801	17873801	C	G	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.1471	p.E491Q	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	55	0	0	67	9	11.84	-	-	-	G	17873801	C	G	17873801	3	3	461	1	0	0	0	0	1	0	0	0	14973	835	29	2	1450	2	SNX13	7	17873801	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		17873801	141264862	15	43350										
TNS3	0	genome.wustl.edu	37	chr7	47344561	47344561	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	ccgatggggctctctgacatCcccacagcgtgagtgagcgt	13	13	1	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	47344561	47344561	C	T	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.2691	p.G897	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	49	0	0	40	10	20	-	-	-	T	47344561	C	T	47344561	2	4	461	1	0	0	0	0	0	0	0	1	16439	842	30	2		2	TNS3	7	47344561	Silent	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09	29470760	47344561	111794102	16	43351										
CPA5	0	genome.wustl.edu	37	chr7	130003343	130003343	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	aacaggaactggaagtcgggTtttggaggtatggcaacctg	15	6	0	0			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	130003343	130003343	T	G	SNP	CPA5	ENST00000479492	human	ensembl	69_37n	1	novel	missense	c.62	p.V21G	0.842	NULL	pfam_Peptidase_M14	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPA5	HGNC	ENSG00000158525	60	0	0	50	16	24.24	-	-	-	G	130003343	T	G	130003343	3	3	461	1	0	0	0	0	1	0	0	0	3823	1712	60	5	861	5	CPA5	7	130003343	Missense_Mutation	SNP	T	TCGA-B6-A0WZ-01A-11D-A10G-09	82658782	130003343	29135320	17	43352										
UNC5D	0	genome.wustl.edu	37	chr8	35616880	35616880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	atcaaggtggacagctcctgGaagaaccaaaattgctgcat	10	9	1	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	8	35616880	35616880	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.2206	p.E736K	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	185	0	0	124	18	12.68	-	-	-	A	35616880	G	A	35616880	3	1	461	1	0	0	0	0	1	0	0	0	17092	1175	41	2	2260	2	UNC5D	8	35616880	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		35616880	110747142	18	43353										
RPL7	0	genome.wustl.edu	37	chr8	74204479	74204479	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	taaaactgaacttaccctctGattctgatgacaaacgccaa	5	11	2	4			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	8	74204479	74204479	G	A	SNP	RPL7	ENST00000352983	human	ensembl	69_37n	-1	known	silent	c.285	p.I95	1.000	pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	pfam_Ribosomal_L30_N,pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	-	no_errors	RPL7	HGNC	ENSG00000147604	162	1	0.61	140	26	15.66	-	-	-	A	74204479	G	A	74204479	2	1	461	1	0	0	0	0	0	0	0	1	13685	1280	45	2		2	RPL7	8	74204479	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	38587599	74204479	72159543	19	43354										
SYK	0	genome.wustl.edu	37	chr9	93629418	93629418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	cgttgtggtttctagacttgGtcagcgggtggaataatctc	13	7	3	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	9	93629418	93629418	G	T	SNP	SYK	ENST00000375746	human	ensembl	69_37n	1	known	missense	c.852	p.W284C	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	204	0	0	161	56	25.81	-	-	-	T	93629418	G	T	93629418	3	4	461	1	0	0	0	0	1	0	0	0	15530	1270	44	4	874	4	SYK	9	93629418	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		93629418	47584013	20	43355										
SURF6	0	genome.wustl.edu	37	chr9	136199031	136199031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	cttcccctcatcctggccgcGcagctcgtccagccggctct	9	20	2	0			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	9	136199031	136199031	G	A	SNP	SURF6	ENST00000372022	human	ensembl	69_37n	-1	known	missense	c.760	p.R254C	1.000	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	12	0	0	2	7	77.78	-	-	-	A	136199031	G	A	136199031	3	1	461	1	0	0	0	0	1	0	0	0	15497	1087	38	1	329	1	SURF6	9	136199031	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	42569613	136199031	5014400	21	43356										
PDE3A	0	genome.wustl.edu	37	chr12	20787975	20787975	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tgcagcacctatgctcctgaGaccatgatgtttctggtagt	10	10	1	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	12	20787975	20787975	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.1986	p.E662	0.527	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	97	0	0	75	9	10.71	-	-	-	A	20787975	G	A	20787975	2	1	461	1	0	0	0	0	0	0	0	1	11710	933	33	2		2	PDE3A	12	20787975	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		20787975	113063920	22	43357										
UBC	0	genome.wustl.edu	37	chr12	125397950	125397950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gcccatcttccagctgctttCcggcaaagatcaacctctgc	7	16	3	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	12	125397950	125397950	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.368	p.G123A	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	112	0	0	87	12	12.12	-	-	-	G	125397950	C	G	125397950	3	3	461	1	0	0	0	0	1	0	0	0	16939	855	30	2	1693	2	UBC	12	125397950	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09	104609975	125397950	8453945	23	43358										
TSC22D1	0	genome.wustl.edu	37	chr13	45148990	45148990	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gaatctaacttcacaactctGaacctcgaagtgttaactgt	6	10	3	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	45148990	45148990	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	silent	c.1221	p.F407	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	99	0	0	87	13	12.87	-	-	-	A	45148990	G	A	45148990	2	1	461	1	0	0	0	0	0	0	0	1	16703	1281	45	2		2	TSC22D1	13	45148990	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		45148990	70020888	24	43359										
TSC22D1	0	genome.wustl.edu	37	chr13	45149901	45149901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gccacttttctttttcatttGagttccgcctggcgcaagag	9	11	2	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	45149901	45149901	G	C	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.310	p.Q104E	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	65	0	0	63	12	16	-	-	-	C	45149901	G	C	45149901	3	2	461	1	0	0	0	0	1	0	0	0	16703	1299	45	2	3052	2	TSC22D1	13	45149901	Missense_Mutation	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	911	45149901	70019977	25	43360										
PCDH9	0	genome.wustl.edu	37	chr13	67799842	67799842	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tcttcctatactttgctcctCcagttcagccggcaggctta	7	14	2	0			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	67799842	67799842	C	G	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.2731	p.E911Q	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	55	0	0	37	6	13.95	-	-	-	G	67799842	C	G	67799842	3	3	461	1	0	0	0	0	1	0	0	0	11591	864	30	2	998	2	PCDH9	13	67799842	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09	22649941	67799842	47370036	26	43361										
TTLL5	0	genome.wustl.edu	37	chr14	76249634	76249634	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tccagggccttgccaccattCttctttatctcaaattcctt	4	14	3	0			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	14	76249634	76249634	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.2747	p.S916F	0.051	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	82	0	0	94	20	17.39	-	-	-	T	76249634	C	T	76249634	3	4	461	1	0	0	0	0	1	0	0	0	16827	913	32	2	2845	2	TTLL5	14	76249634	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		76249634	31099906	27	43362										
AHNAK2	0	genome.wustl.edu	37	chr14	105412225	105412225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gctcaatgctgatgtcagtgTtcttcaggtccccctgcatg	10	12	4	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	14	105412225	105412225	T	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.9563	p.N3188T	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	95	0	0	104	14	11.86	-	-	-	G	105412225	T	G	105412225	3	3	461	1	0	0	0	0	1	0	0	0	415	1725	60	5	7828	5	AHNAK2	14	105412225	Missense_Mutation	SNP	T	TCGA-B6-A0WZ-01A-11D-A10G-09	29162591	105412225	1937315	28	43363										
RASGRF1	0	genome.wustl.edu	37	chr15	79296367	79296367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gtgatgatggggatgttcagGgagagcttccgccggcggct	18	8	1	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	15	79296367	79296367	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.2274	p.S758	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	15	0	0	10	6	37.5	-	-	-	A	79296367	G	A	79296367	2	1	461	1	0	0	0	0	0	0	0	1	13155	1219	43	4		4	RASGRF1	15	79296367	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		79296367	23235025	29	43364										
CBFB	0	genome.wustl.edu	37	chr16	67070634	67070634	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	acacctagccgagagtatgtCgacttagaaagagaagcagg	12	8	0	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	16	67070634	67070634	C	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	silent	c.258	p.V86	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	65	0	0	32	23	41.82	-	-	-	A	67070634	C	A	67070634	2	1	461	1	0	0	0	0	0	0	0	1	2724	871	31	3		3	CBFB	16	67070634	Silent	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		67070634	23284119	30	43365										
MAP2K4	0	genome.wustl.edu	37	chr17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	tatggaactcatgtctacctCgtttgataagttttacaaat	6	7	2	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	17	12011144	12011144	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.584	p.S195L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	308	1	0.32	123	92	42.59	-	-	-	T	12011144	C	T	12011144	3	4	461	1	0	0	0	0	1	0	0	0	9310	893	31	1	569	1	MAP2K4	17	12011144	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		12011144	69184066	31	43366										
CSH2	0	genome.wustl.edu	37	chr17	61950968	61950968	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	attttaggggcgcttacctgCagccattgccgctaggtgag	13	10	0	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	17	61950968	61950968	C	G	SNP	CSH2	ENST00000392886	human	ensembl	69_37n	-1	known	missense	c.7	p.A3P	0.998	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH2	HGNC	ENSG00000213218	59	0	0	24	13	35.14	-	-	-	G	61950968	C	G	61950968	3	3	461	1	0	0	0	0	1	0	0	0	3973	710	25	4	714	4	CSH2	17	61950968	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09	49939824	61950968	19244242	32	43367										
PRAM1	0	genome.wustl.edu	37	chr19	8564533	8564533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	ggggccttcttggggtgctcGcttagctcaggctgggagaa	17	9	2	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	19	8564533	8564533	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	silent	c.159	p.S53	0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	19	0	0	19	9	32.14	-	-	-	A	8564533	G	A	8564533	2	1	461	1	0	0	0	0	0	0	0	1	12500	1078	38	1		1	PRAM1	19	8564533	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09		8564533	50564450	33	43368										
FCGBP	0	genome.wustl.edu	37	chr19	40407987	40407987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	cattgctggatgggcacgcaGgcttggccattgtagaggaa	15	8	0	1			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	19	40407987	40407987	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.4734	p.A1578	0.119	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	43	0	0	20	10	33.33	-	-	-	A	40407987	G	A	40407987	2	1	461	1	0	0	0	0	0	0	0	1	5824	987	35	4		4	FCGBP	19	40407987	Silent	SNP	G	TCGA-B6-A0WZ-01A-11D-A10G-09	31843454	40407987	18720996	34	43369										
TOMM34	0	genome.wustl.edu	37	chr20	43585106	43585106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	gttggagtagagaacactttCttcttctgggtctgaagaac	11	7	4	3			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	20	43585106	43585106	C	T	SNP	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	missense	c.148	p.E50K	0.985	pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	69	0	0	50	8	13.79	-	-	-	T	43585106	C	T	43585106	3	4	461	1	0	0	0	0	1	0	0	0	16452	922	32	2	805	2	TOMM34	20	43585106	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		43585106	19440414	35	43370										
RIMBP3	0	genome.wustl.edu	37	chr22	20456978	20456978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.388888888888889	14	0.000908088620580713	2.83404014701725	3.41603053435115	2.58899156287666	0.285163190900305	0.930327025915261	9	cgtccccagctgttgggggcCacccctgggcatcttgatga	13	14	1	2			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	22	20456978	20456978	C	T	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	missense	c.4324	p.G1442S	0.000	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	21	0	0	4	2	33.33	-	-	-	T	20456978	C	T	20456978	3	4	461	1	0	0	0	0	1	0	0	0	13448	594	21	4	599	4	RIMBP3	22	20456978	Missense_Mutation	SNP	C	TCGA-B6-A0WZ-01A-11D-A10G-09		20456978	30847588	36	43371										
NOTCH2	0	genome.wustl.edu	37	chr1	120465265	120465265	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagtgccactcactgacgaCagacacaagagggtatgaca	10	12	1	4			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	1	120465265	120465265	C	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.4996	p.V1666F	0.999	pirsf_Notch,pfam_Notch_NODP_dom,prints_Notch_2	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	117	0	0	87	51	36.96	-	-	-	A	120465265	C	A	120465265	3	1	462	1	0	0	0	0	1	0	0	0	10620	478	17	4	2451	4	NOTCH2	1	120465265	Missense_Mutation	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09		120465265	128785356	1	43372										
CALM2	0	genome.wustl.edu	37	chr2	47403600	47403600	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catgctgcaagcgctaccggTttccgagacgcgaccacaca	10	15	0	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	47403600	47403600	T	A	SNP	CALM2	ENST00000456319	human	ensembl	69_37n	-1	putative	missense	c.51	p.K17N	0.994	NULL	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_start_codon	CALM2	HGNC	ENSG00000143933	70	0	0	41	28	40.58	-	-	-	A	47403600	T	A	47403600	3	1	462	1	0	0	0	0	1	0	0	0	2610	1740	60	5		5	CALM2	2	47403600	Missense_Mutation	SNP	T	TCGA-B6-A0X0-01A-21D-A10Y-09		47403600	195795773	2	43373										
LRP2	0	genome.wustl.edu	37	chr2	170135997	170135997	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcggttgaccttggtttccaCtagatagattttattattaa	8	6	0	3			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	170135997	170135997	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1450	p.V484L	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	80	0	0	75	37	33.04	-	-	-	A	170135997	C	A	170135997	3	1	462	1	0	0	0	0	1	0	0	0	9022	565	20	4	12789	4	LRP2	2	170135997	Missense_Mutation	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09	122732397	170135997	73063376	3	43374										
STAT4	0	genome.wustl.edu	37	chr2	191922752	191922752	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tgccaaacttaccaaatgtcGaaattctactgagagactcc	6	11	1	2			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	191922752	191922752	G	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.R400*	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	73	0	0	98	37	27.21	-	-	-	A	191922752	G	A	191922752	4	1	462	1	0	0	0	0	0	1	0	0	15358	1066	37	1	1096	1	STAT4	2	191922752	Nonsense_Mutation	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09	21786755	191922752	51276621	4	43375										
SH3D19	0	genome.wustl.edu	37	chr4	152096472	152096472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctcaaacactttaattctgGaaacaatactattttggctt	4	9	2	0			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	4	152096472	152096472	G	T	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.44	p.S15Y	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	119	1	0.83	99	55	35.71	-	-	-	T	152096472	G	T	152096472	3	4	462	1	0	0	0	0	1	0	0	0	14337	1174	41	2	2388	2	SH3D19	4	152096472	Missense_Mutation	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09		152096472	39057804	5	43376										
CDH6	0	genome.wustl.edu	37	chr5	31294263	31294263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagggagacccgtggagccCgagtctgaattcatcatcaa	11	11	4	2			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	5	31294263	31294263	C	T	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	silent	c.423	p.P141	0.039	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	60	0	0	53	41	43.62	-	-	-	T	31294263	C	T	31294263	2	4	462	1	0	0	0	0	0	0	0	1	3143	639	23	1		1	CDH6	5	31294263	Silent	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09		31294263	149620997	6	43377										
ZNF804B	0	genome.wustl.edu	37	chr7	88964843	88964843	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacctaattgccagggaacTcagcacgacagattggactc	9	13	1	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	7	88964843	88964843	T	C	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	silent	c.2547	p.T849	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	29	0	0	24	7	22.58	-	-	-	C	88964843	T	C	88964843	2	2	462	1	0	0	0	0	0	0	0	1	18264	1538	54	5		5	ZNF804B	7	88964843	Silent	SNP	T	TCGA-B6-A0X0-01A-21D-A10Y-09		88964843	70173820	7	43378										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0	0	1	0	0	0	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	110	0	0	106	34	24.11	-	-	-	-	8111434	CA	-	8111433	8	5	462	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-B6-A0X0-01A-21D-A10Y-09		8111433	127423314	8	43379										
GPRIN2	0	genome.wustl.edu	37	chr10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccgggaacagaggccagagCtccgcaagactgccagcagc	14	14	0	3			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	13	0	0	12	6	33.33	-	-	-	G	46998995	C	G	46998995	3	3	462	1	0	0	0	0	1	0	0	0	6781	797	28	4	117	4	GPRIN2	10	46998995	Missense_Mutation	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09	38887562	46998995	88535752	9	43380										
MYPN	0	genome.wustl.edu	37	chr10	69961611	69961611	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggtgaagaaagcacctgtGatcctggagaaactacagaa	12	7	0	5			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	69961611	69961611	G	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	silent	c.3519	p.V1173	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	36	0	0	42	23	35.38	-	-	-	T	69961611	G	T	69961611	2	4	462	1	0	0	0	0	0	0	0	1	10170	1277	45	2		2	MYPN	10	69961611	Silent	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09	22962616	69961611	65573136	10	43381										
LCP1	0	genome.wustl.edu	37	chr13	46732779	46732779	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catctgtgctttttaggccaTggaaaatctgcaaaaatata	7	7	2	0			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	13	46732779	46732779	T	C	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	missense	c.236	p.H79R	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	168	0	0	157	76	32.62	-	-	-	C	46732779	T	C	46732779	3	2	462	1	0	0	0	0	1	0	0	0	8745	1464	51	5	1699	5	LCP1	13	46732779	Missense_Mutation	SNP	T	TCGA-B6-A0X0-01A-21D-A10Y-09		46732779	68437099	11	43382										
MYO18A	0	genome.wustl.edu	37	chr17	27445423	27445423	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggcacaatcccaaacacaTtgttctctgccaagtggttg	9	11	1	0			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	27445423	27445423	T	C	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.1865	p.N622S	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	142	0	0	113	42	27.1	-	-	-	C	27445423	T	C	27445423	3	2	462	1	0	0	0	0	1	0	0	0	10137	1493	52	5	4435	5	MYO18A	17	27445423	Missense_Mutation	SNP	T	TCGA-B6-A0X0-01A-21D-A10Y-09		27445423	53749787	12	43383										
ITGB3	0	genome.wustl.edu	37	chr17	45367609	45367609	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgtccatggattccagcaAtgtcctccagctcattgttg	8	12	2	0			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	45367609	45367609	A	G	SNP	ITGB3	ENST00000262017	human	ensembl	69_37n	1	known	missense	c.1094	p.N365S	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	341	0	0	237	135	36.29	-	-	-	G	45367609	A	G	45367609	3	3	462	1	0	0	0	0	1	0	0	0	7949	101	4	5	1124	5	ITGB3	17	45367609	Missense_Mutation	SNP	A	TCGA-B6-A0X0-01A-21D-A10Y-09	17922186	45367609	35827601	13	43384										
SEH1L	0	genome.wustl.edu	37	chr18	12971157	12971157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctccccgtttctagctctcGtgctcattcccccatgatcg	6	17	4	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	18	12971157	12971157	G	A	SNP	SEH1L	ENST00000399892	human	ensembl	69_37n	1	known	missense	c.527	p.R176H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEH1L	HGNC	ENSG00000085415	131	0	0	117	70	37.43	-	-	-	A	12971157	G	A	12971157	3	1	462	1	0	0	0	0	1	0	0	0	14097	1145	40	1	545	1	SEH1L	18	12971157	Missense_Mutation	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09		12971157	65106091	14	43385										
FBN3	0	genome.wustl.edu	37	chr19	8191626	8191626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggtaccagaggggtccagcCggctgccagggccacatttg	15	12	0	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	19	8191626	8191626	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.2387	p.R796Q	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	32	0	0	21	15	41.67	-	-	-	T	8191626	C	T	8191626	3	4	462	1	0	0	0	0	1	0	0	0	5750	652	23	1	6226	1	FBN3	19	8191626	Missense_Mutation	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09		8191626	50937357	15	43386										
PHF20	0	genome.wustl.edu	37	chr20	34519315	34519315	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagcttcttggtgatgtgcAgagagtgattgaggttctgc	14	7	2	4			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	20	34519315	34519315	A	T	SNP	PHF20	ENST00000374012	human	ensembl	69_37n	1	known	missense	c.2249	p.Q750L	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	96	0	0	69	29	29.59	-	-	-	T	34519315	A	T	34519315	3	4	462	1	0	0	0	0	1	0	0	0	11905	188	7	5	2303	5	PHF20	20	34519315	Missense_Mutation	SNP	A	TCGA-B6-A0X0-01A-21D-A10Y-09		34519315	28506205	16	43387										
ASMTL	0	genome.wustl.edu	37	chrX	1522276	1522276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgatactcgcccaggctccgCtccttgccttcagtctgcac	8	17	2	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	1522276	1522276	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	silent	c.1752	p.E584	0.991	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	93	0	0	67	37	35.58	-	-	-	T	1522276	C	T	1522276	2	4	462	1	0	0	0	0	0	0	0	1	1050	796	28	4		4	ASMTL	23	1522276	Silent	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09		1522276	153748284	17	43388										
FRMPD4	0	genome.wustl.edu	37	chrX	12722503	12722503	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatggggattagagacttttCttccctctgctgtgctgcaa	10	9	2	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	12722503	12722503	C	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.1096	p.L366I	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	138	0	0	102	68	40	-	-	-	A	12722503	C	A	12722503	3	1	462	1	0	0	0	0	1	0	0	0	6108	913	32	2	1138	2	FRMPD4	23	12722503	Missense_Mutation	SNP	C	TCGA-B6-A0X0-01A-21D-A10Y-09	11200227	12722503	142548057	18	43389										
ALAS2	0	genome.wustl.edu	37	chrX	55042138	55042138	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcagggccccatactggtgGgacacatcacacaactcctc	9	15	2	0			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	55042138	55042138	G	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	silent	c.1041	p.S347	0.990	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	97	0	0	84	35	29.41	-	-	-	T	55042138	G	T	55042138	2	4	462	1	0	0	0	0	0	0	0	1	485	1219	43	4		4	ALAS2	23	55042138	Silent	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09	42319635	55042138	100228422	19	43390										
PCDH19	0	genome.wustl.edu	37	chrX	99663130	99663130	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	gccaaagcttcctgagtctgGatcgtaagcgctgtccagcg	12	12	1	1			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	99663130	99663130	G	C	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.466	p.P156A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	85	0	0	45	24	34.29	-	-	-	C	99663130	G	C	99663130	3	2	462	1	0	0	0	0	1	0	0	0	11587	1174	41	2	3004	2	PCDH19	23	99663130	Missense_Mutation	SNP	G	TCGA-B6-A0X0-01A-21D-A10Y-09	44620992	99663130	55607430	20	43391										
AKNAD1	0	genome.wustl.edu	37	chr1	109394956	109394956	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aagatgatgaagtaaaatatCagaaatgcttgacttagaag	9	3	1	6			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	109394956	109394956	C	G	SNP	AKNAD1	ENST00000370001	human	ensembl	69_37n	-1	known	missense	c.331	p.D111H	0.066	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	109	0	0	45	49	52.13	-	-	-	G	109394956	C	G	109394956	3	3	463	1	0	0	0	0	1	0	0	0	464	826	29	2	2239	2	AKNAD1	1	109394956	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		109394956	139855665	1	43392										
ATXN7L2	0	genome.wustl.edu	37	chr1	110031008	110031008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aagtgctttccccacagggaAggagtgcgacctcaacaggc	12	12	1	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	110031008	110031008	A	G	SNP	ATXN7L2	ENST00000369870	human	ensembl	69_37n	1	known	missense	c.704	p.K235R	1.000	pfam_SCA7_dom	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	51	0	0	28	32	53.33	-	-	-	G	110031008	A	G	110031008	3	3	463	1	0	0	0	0	1	0	0	0	1221	72	3	5	726	5	ATXN7L2	1	110031008	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	636052	110031008	139219613	2	43393										
FCRL5	0	genome.wustl.edu	37	chr1	157516898	157516898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tttctgtggtgagtagaagcGaaatcccttgcaagtgaggg	14	6	1	3			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	157516898	157516898	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.142	p.R48C	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	114	0	0	78	54	40.91	-	-	-	A	157516898	G	A	157516898	3	1	463	1	0	0	0	0	1	0	0	0	5844	1058	37	1	2851	1	FCRL5	1	157516898	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	47485890	157516898	91733723	3	43394										
CYB5R1	0	genome.wustl.edu	37	chr1	202931677	202931677	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	agtaggtgaatcgcatctttTgtgagtagcccagtttgtcc	11	8	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	202931677	202931677	T	A	SNP	CYB5R1	ENST00000367249	human	ensembl	69_37n	-1	known	missense	c.896	p.Q299L	0.998	NULL	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	-	no_errors	CYB5R1	HGNC	ENSG00000159348	22	0	0	26	13	33.33	-	-	-	A	202931677	T	A	202931677	3	1	463	1	0	0	0	0	1	0	0	0	4157	1812	63	5	25	5	CYB5R1	1	202931677	Missense_Mutation	SNP	T	TCGA-B6-A0X1-01A-11D-A10G-09	45414779	202931677	46318944	4	43395										
TRIM67	0	genome.wustl.edu	37	chr1	231344862	231344862	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gtggaccggtacgacaaccaCccagaccccgccttcggggt	12	16	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	231344862	231344862	C	G	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	missense	c.1989	p.H663Q	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	22	0	0	28	17	37.78	-	-	-	G	231344862	C	G	231344862	3	3	463	1	0	0	0	0	1	0	0	0	16636	506	18	4	2019	4	TRIM67	1	231344862	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	28413185	231344862	17905759	5	43396										
OR2T5	0	genome.wustl.edu	37	chr1	248652151	248652151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ctgtgcccaagatgctcctgGaccaggtcatgggtgtgaat	13	10	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	1	248652151	248652151	G	A	SNP	OR2T5	ENST00000366473	human	ensembl	69_37n	1	known	missense	c.262	p.D88N	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T5	HGNC	ENSG00000203661	44	0	0	55	10	15.38	-	-	-	A	248652151	G	A	248652151	3	1	463	1	0	0	0	0	1	0	0	0	11101	1174	41	2	264	2	OR2T5	1	248652151	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	17307289	248652151	598470	6	43397										
CAD	0	genome.wustl.edu	37	chr2	27454419	27454419	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	atgagaactgtgtgggctttGatcacacagtgaaaccagtc	11	8	1	3			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	2	27454419	27454419	G	C	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.2371	p.D791H	1.000	superfamily_CarbamoylP_synth_lsu_oligo,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	52	0	0	57	34	37.36	-	-	-	C	27454419	G	C	27454419	3	2	463	1	0	0	0	0	1	0	0	0	2590	1290	45	2	2433	2	CAD	2	27454419	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		27454419	215744954	7	43398										
DPP4	0	genome.wustl.edu	37	chr2	162849872	162849872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gtgctgtgctgctagctattCcatggtcttcatcagtatac	9	10	3	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	2	162849872	162849872	C	T	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.2222	p.G741E	0.861	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	380	0	0	105	132	55.7	-	-	-	T	162849872	C	T	162849872	3	4	463	1	0	0	0	0	1	0	0	0	4764	855	30	2	82	2	DPP4	2	162849872	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	135395453	162849872	80349501	8	43399										
TTN	0	genome.wustl.edu	37	chr2	179613845	179613845	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ttttgtattgtaactgtcagAaattctctcagagtgaatat	7	5	3	3			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	2	179613845	179613845	A	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.13282	p.S4428P	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	130	0	0	66	51	43.22	-	-	-	G	179613845	A	G	179613845	3	3	463	1	0	0	0	0	1	0	0	0	16832	246	9	5	97015	5	TTN	2	179613845	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	16763973	179613845	63585528	9	43400										
ALS2CR8	0	genome.wustl.edu	37	chr2	203826027	203826027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	agaaagtgtcctaacatttcAcaagcagcaaacacagagtg	8	9	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	2	203826027	203826027	A	G	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	missense	c.710	p.H237R	1.000	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	83	0	0	79	43	35.25	-	-	-	G	203826027	A	G	203826027	3	3	463	1	0	0	0	0	1	0	0	0	555	159	6	5	732	5	ALS2CR8	2	203826027	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	24212182	203826027	39373346	10	43401										
CACNA2D2	0	genome.wustl.edu	37	chr3	50402899	50402899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gcgcgtctcggggctcccctCggcctccgcggggtctgcga	16	17	2	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	50402899	50402899	C	T	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.3007	p.E1003K	1.000	NULL	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	14	0	0	6	9	60	-	-	-	T	50402899	C	T	50402899	3	4	463	1	0	0	0	0	1	0	0	0	2574	893	31	1	467	1	CACNA2D2	3	50402899	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		50402899	147619531	11	43402										
CCDC80	0	genome.wustl.edu	37	chr3	112358633	112358633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ctactgctgtccggagaaacCaaaggcactttccgtcctcc	8	15	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	112358633	112358633	C	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.120	p.L40F	0.002	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	17	0	0	16	10	37.04	-	-	-	A	112358633	C	A	112358633	3	1	463	1	0	0	0	0	1	0	0	0	2881	593	21	4	2760	4	CCDC80	3	112358633	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	61955734	112358633	85663797	12	43403										
MYLK	0	genome.wustl.edu	37	chr3	123337588	123337588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	atgaggcttttcctcagcaaCagcctcaaggaaagcttggg	11	10	2	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	123337588	123337588	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.5398	p.V1800I	0.933	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	102	0	0	63	50	44.25	-	-	-	T	123337588	C	T	123337588	3	4	463	1	0	0	0	0	1	0	0	0	10128	478	17	4	354	4	MYLK	3	123337588	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	10978955	123337588	74684842	13	43404										
ATP11B	0	genome.wustl.edu	37	chr3	182554293	182554293	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gtttgagtattgctcttggtGaacaaagtgtctttggatta	11	4	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	182554293	182554293	G	A	SNP	ATP11B	ENST00000493826	human	ensembl	69_37n	1	putative	silent	c.587	p.*196	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	101	0	0	68	46	40.35	-	-	-	A	182554293	G	A	182554293	2	1	463	1	0	0	0	0	0	0	0	1	1124	1305	45	2		2	ATP11B	3	182554293	Silent	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	59216705	182554293	15468137	14	43405										
EPHB3	0	genome.wustl.edu	37	chr3	184297496	184297496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ggaatttggggaagtgtgccGtggtcgactgaaacagcctg	16	7	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	184297496	184297496	G	C	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	missense	c.1946	p.R649P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	33	0	0	27	12	30.77	-	-	-	C	184297496	G	C	184297496	3	2	463	1	0	0	0	0	1	0	0	0	5213	1145	40	3	1988	3	EPHB3	3	184297496	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	1743203	184297496	13724934	15	43406										
MASP1	0	genome.wustl.edu	37	chr3	186953802	186953802	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ggcaccacgggtaacttgacAtactgcaggacatctgacaa	10	11	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	186953802	186953802	A	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	nonsense	c.1857	p.Y619*	0.816	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	22	0	0	23	8	25.81	-	-	-	T	186953802	A	T	186953802	4	4	463	1	0	0	0	0	0	1	0	0	9393	224	8	5	1154	5	MASP1	3	186953802	Nonsense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	2656306	186953802	11068628	16	43407										
MUC20	0	genome.wustl.edu	37	chr3	195451697	195451697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cctcaaccccagccggccccAttccagaagcagagaccagg	9	18	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	3	195451697	195451697	A	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.223	p.I75V	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	11	0	0	14	7	33.33	-	-	-	G	195451697	A	G	195451697	3	3	463	1	0	0	0	0	1	0	0	0	10048	217	8	5	229	5	MUC20	3	195451697	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	8497895	195451697	2570733	17	43408										
SCFD2	0	genome.wustl.edu	37	chr4	54011747	54011747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gacattgctgactccccaatGctctaaaataaaaaatgata	5	9	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	4	54011747	54011747	G	A	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	silent	c.1314	p.S438	0.974	superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	108	0	0	78	34	30.36	-	-	-	A	54011747	G	A	54011747	2	1	463	1	0	0	0	0	0	0	0	1	13977	1310	46	4		4	SCFD2	4	54011747	Silent	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		54011747	137142529	18	43409										
OSMR	0	genome.wustl.edu	37	chr5	38881757	38881757	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tggagctgggaatctgagctCcctttggaatgtgccacaca	12	10	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	5	38881757	38881757	C	G	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	silent	c.309	p.L103	0.128	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	113	0	0	75	47	38.52	-	-	-	G	38881757	C	G	38881757	2	3	463	1	0	0	0	0	0	0	0	1	11365	842	30	2		2	OSMR	5	38881757	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		38881757	142033503	19	43410										
PCDHB12	0	genome.wustl.edu	37	chr5	140588586	140588586	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aactgggaactttttggtgaTggaggaattgcagagcggga	16	4	0	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	5	140588586	140588586	T	C	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.107	p.M36T	0.007	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	152	0	0	38	57	60	-	-	-	C	140588586	T	C	140588586	3	2	463	1	0	0	0	0	1	0	0	0	11610	1464	51	5	109	5	PCDHB12	5	140588586	Missense_Mutation	SNP	T	TCGA-B6-A0X1-01A-11D-A10G-09	101706829	140588586	40326674	20	43411										
ARAP3	0	genome.wustl.edu	37	chr5	141059669	141059669	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aggccttgggctgggctctgGgctcctggacactcctggtc	15	13	1	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	5	141059669	141059669	G	C	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.385	p.P129A	0.998	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	23	0	0	26	5	16.13	-	-	-	C	141059669	G	C	141059669	3	2	463	1	0	0	0	0	1	0	0	0	842	1232	43	4	4377	4	ARAP3	5	141059669	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	471083	141059669	39855591	21	43412										
HK3	0	genome.wustl.edu	37	chr5	176308510	176308510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ccagatcctctaggatggctCggacctgccgcagggccagg	14	14	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	5	176308510	176308510	C	T	SNP	HK3	ENST00000292432	human	ensembl	69_37n	-1	known	missense	c.2420	p.R807Q	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	14	0	0	9	5	35.71	-	-	-	T	176308510	C	T	176308510	3	4	463	1	0	0	0	0	1	0	0	0	7243	884	31	1	359	1	HK3	5	176308510	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	35248841	176308510	4606750	22	43413										
MDN1	0	genome.wustl.edu	37	chr6	90402230	90402230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cttgcataacacgtgggagcGcaggtaaaggagagcattca	13	8	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	6	90402230	90402230	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.10519	p.R3507C	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	10	0	0	13	9	40.91	-	-	-	A	90402230	G	A	90402230	3	1	463	1	0	0	0	0	1	0	0	0	9486	1087	38	1	6431	1	MDN1	6	90402230	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		90402230	80712837	23	43414										
RSPH10B2	0	genome.wustl.edu	37	chr7	6820477	6820477	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcttcttgtgttttacaaaaCtgatgaccgagaacattcgt	7	8	2	3			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	7	6820477	6820477	C	T	SNP	RSPH10B2	ENST00000297186	human	ensembl	69_37n	1	known	silent	c.1567	p.L523	0.929	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B2	HGNC	ENSG00000169402	269	0	0	61	133	68.21	-	-	-	T	6820477	C	T	6820477	2	4	463	1	0	0	0	0	0	0	0	1	13790	564	20	4		4	RSPH10B2	7	6820477	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		6820477	152318186	24	43415										
CYP3A4	0	genome.wustl.edu	37	chr7	99366036	99366036	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aaagcttcttggtgttttccAcaaaggggtcttgtggattg	12	6	2	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	7	99366036	99366036	A	C	SNP	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	missense	c.611	p.V204G	0.989	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	270	0	0	188	92	32.86	-	-	-	C	99366036	A	C	99366036	3	2	463	1	0	0	0	0	1	0	0	0	4209	159	6	5	928	5	CYP3A4	7	99366036	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	92545559	99366036	59772627	25	43416										
UNC5D	0	genome.wustl.edu	37	chr8	35608205	35608205	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ggacctatgcgctcactggaGagccaatcacagactgtgcc	11	13	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	8	35608205	35608205	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	nonsense	c.2041	p.E681*	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	112	0	0	30	94	75.81	-	-	-	T	35608205	G	T	35608205	4	4	463	1	0	0	0	0	0	1	0	0	17092	943	33	2	2091	2	UNC5D	8	35608205	Nonsense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		35608205	110755817	26	43417										
SNAPC3	0	genome.wustl.edu	37	chr9	15451369	15451369	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aaggaacattttataatgatAaaagatacccagaatgcaga	7	5	0	4			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	9	15451369	15451369	A	G	SNP	SNAPC3	ENST00000380821	human	ensembl	69_37n	1	known	missense	c.784	p.K262E	1.000	pfam_snRNA-activating_su3	pfam_snRNA-activating_su3	-	no_errors	SNAPC3	HGNC	ENSG00000164975	230	0	0	176	123	41	-	-	-	G	15451369	A	G	15451369	3	3	463	1	0	0	0	0	1	0	0	0	14925	363	13	5	806	5	SNAPC3	9	15451369	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09		15451369	125762062	27	43418										
FOXB2	0	genome.wustl.edu	37	chr9	79634614	79634614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gtacagcgaccaaaaaccgcCctactcttacatctcgctga	6	15	2	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	9	79634614	79634614	C	T	SNP	FOXB2	ENST00000376708	human	ensembl	69_37n	1	known	missense	c.44	p.P15L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612	11	0	0	17	6	26.09	-	-	-	T	79634614	C	T	79634614	3	4	463	1	0	0	0	0	1	0	0	0	6039	623	22	4	46	4	FOXB2	9	79634614	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	64183245	79634614	61578817	28	43419										
ITIH2	0	genome.wustl.edu	37	chr10	7769038	7769038	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcagctacaaaaacacaggtTgcagatgccaagaggtatat	9	8	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	10	7769038	7769038	T	G	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	silent	c.1110	p.V370	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	127	0	0	143	48	25.13	-	-	-	G	7769038	T	G	7769038	2	3	463	1	0	0	0	0	0	0	0	1	7958	1799	63	5		5	ITIH2	10	7769038	Silent	SNP	T	TCGA-B6-A0X1-01A-11D-A10G-09		7769038	127765709	29	43420										
NSMCE4A	0	genome.wustl.edu	37	chr10	123727171	123727171	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	atttttaaaataatcttacaGaaagtggaatgtatgggttt	8	2	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	10	123727171	123727171	G	C	SNP	NSMCE4A	ENST00000369023	human	ensembl	69_37n	-1	known	missense	c.652	p.L218V	1.000	pfam_Nse4	pfam_Nse4	-	no_errors	NSMCE4A	HGNC	ENSG00000107672	425	0	0	249	150	37.59	-	-	-	C	123727171	G	C	123727171	3	2	463	1	0	0	0	0	1	0	0	0	10750	956	33	2	533	2	NSMCE4A	10	123727171	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	115958133	123727171	11807576	30	43421										
UROS	0	genome.wustl.edu	37	chr10	127505059	127505059	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cttcgcatccttcagtaaaaGaaccttcattattgcctggc	6	12	2	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	10	127505059	127505059	G	A	SNP	UROS	ENST00000368786	human	ensembl	69_37n	-1	known	missense	c.10	p.L4F	1.000	superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690	111	0	0	34	77	69.37	-	-	-	A	127505059	G	A	127505059	3	1	463	1	0	0	0	0	1	0	0	0	17127	942	33	2	823	2	UROS	10	127505059	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	3777888	127505059	8029688	31	43422										
RCN1	0	genome.wustl.edu	37	chr11	32119986	32119986	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aagattcaaagctgcagaccTcaatggtgacctgacagcta	9	10	2	4			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	11	32119986	32119986	T	A	SNP	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	missense	c.539	p.L180H	0.990	pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	134	0	0	98	63	39.13	-	-	-	A	32119986	T	A	32119986	3	1	463	1	0	0	0	0	1	0	0	0	13262	1551	54	5	549	5	RCN1	11	32119986	Missense_Mutation	SNP	T	TCGA-B6-A0X1-01A-11D-A10G-09		32119986	102886530	32	43423										
OR5AK2	0	genome.wustl.edu	37	chr11	56756447	56756447	+	Frame_Shift_Del	DEL	A	A	-													0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcttctgggatttggtgcccAgcatgagttttggtgtatcc							TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	11	56756447	56756447	A	-	DEL	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	frame_shift_del	c.59	p.Q20fs	0.028	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	166	0	0	109	76	39.58	-	-	-	-	56756447	A	-	56756447	7	5	463	1	0	1	0	1	0	0	0	0	11215	188	7	0	61	0	OR5AK2	11	56756447	Frame_Shift_Del	DEL	A	TCGA-B6-A0X1-01A-11D-A10G-09	24636461	56756447	78250069	33	43424	351	2								
OR5AK2	0	genome.wustl.edu	37	chr11	56756448	56756448	+	Missense_Mutation	SNP	G	G	C													0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cttctgggatttggtgcccaGcatgagttttggtgtatcct							TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	11	56756448	56756448	G	C	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.60	p.Q20H	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	171	0	0	109	81	42.63	-	-	-	C	56756448	G	C	56756448	3	2	463	1	0	0	0	0	1	0	0	0	11215	962	34	4	62	4	OR5AK2	11	56756448	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	1	56756448	78250068	34	43425	351	2								
PGM2L1	0	genome.wustl.edu	37	chr11	74058348	74058348	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gaccccatgaaaagatgtgtGcacaaatttcaaggtggtct	10	8	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	11	74058348	74058348	G	T	SNP	PGM2L1	ENST00000298198	human	ensembl	69_37n	-1	known	missense	c.784	p.H262N	1.000	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III	-	no_errors	PGM2L1	HGNC	ENSG00000165434	125	0	0	136	61	30.96	-	-	-	T	74058348	G	T	74058348	3	4	463	1	0	0	0	0	1	0	0	0	11873	1319	46	4	1116	4	PGM2L1	11	74058348	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	17301900	74058348	60948168	35	43426										
OR8B2	0	genome.wustl.edu	37	chr11	124252746	124252746	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tagcactgcagaaggtgagtCtaagcatgcacccggtgtgg	14	9	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	11	124252746	124252746	C	G	SNP	OR8B2	ENST00000375013	human	ensembl	69_37n	-1	known	missense	c.494	p.R165T	0.077	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293	45	0	0	13	23	63.89	-	-	-	G	124252746	C	G	124252746	3	3	463	1	0	0	0	0	1	0	0	0	11300	913	32	2	450	2	OR8B2	11	124252746	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	50194398	124252746	10753770	36	43427										
ATP12A	0	genome.wustl.edu	37	chr13	25265155	25265155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tggttatcaacacgggtgacCgcaccatcattggccatatt	9	11	2	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	13	25265155	25265155	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	missense	c.853	p.R285C	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	60	0	0	18	29	61.7	-	-	-	T	25265155	C	T	25265155	3	4	463	1	0	0	0	0	1	0	0	0	1126	652	23	1	883	1	ATP12A	13	25265155	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		25265155	89904723	37	43428										
AKAP11	0	genome.wustl.edu	37	chr13	42876522	42876522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tttctcttgcaactgaaatgGcagcttcccatttagataac	6	10	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	13	42876522	42876522	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.3640	p.A1214T	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	57	0	0	32	15	31.91	-	-	-	A	42876522	G	A	42876522	3	1	463	1	0	0	0	0	1	0	0	0	447	1203	42	4	3662	4	AKAP11	13	42876522	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	17611367	42876522	72293356	38	43429										
ATP4B	0	genome.wustl.edu	37	chr13	114303807	114303807	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cgacctcagcgttcctggggAtgttgaggagcttcgctgcc	14	12	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	13	114303807	114303807	A	C	SNP	ATP4B	ENST00000335288	human	ensembl	69_37n	-1	known	missense	c.758	p.I253S	0.560	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP4B	HGNC	ENSG00000186009	56	0	0	66	21	24.14	-	-	-	C	114303807	A	C	114303807	3	2	463	1	0	0	0	0	1	0	0	0	1150	333	12	5	121	5	ATP4B	13	114303807	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09	71427285	114303807	866071	39	43430										
TMC3	0	genome.wustl.edu	37	chr15	81625444	81625444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ggaccctgtgccagcaaagtCgaggcctgtggtccacggtg	15	12	0	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	15	81625444	81625444	C	G	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	silent	c.2619	p.S873	0.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	74	0	0	63	31	32.98	-	-	-	G	81625444	C	G	81625444	2	3	463	1	0	0	0	0	0	0	0	1	16081	871	31	3		3	TMC3	15	81625444	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		81625444	20905948	40	43431										
ABHD2	0	genome.wustl.edu	37	chr15	89731456	89731456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tggagaccatgttaagaaacCccagagcctggaagacacgg	12	10	0	4			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	15	89731456	89731456	C	T	SNP	ABHD2	ENST00000352732	human	ensembl	69_37n	1	known	missense	c.848	p.P283L	1.000	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526	111	1	0.89	109	18	14.17	-	-	-	T	89731456	C	T	89731456	3	4	463	1	0	0	0	0	1	0	0	0	82	623	22	4	870	4	ABHD2	15	89731456	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	8106012	89731456	12799936	41	43432										
C15orf38	0	genome.wustl.edu	37	chr15	90447196	90447196	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcgggcgtgagcctgtcagtGtcccccttggcttccacctc	11	16	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	15	90447196	90447196	G	A	SNP	C15orf38	ENST00000357484	human	ensembl	69_37n	-1	known	silent	c.321	p.D107	0.786	pfam_UPF0552	pfam_UPF0552	-	no_errors	C15orf38	HGNC	ENSG00000242498	10	0	0	6	12	66.67	-	-	-	A	90447196	G	A	90447196	2	1	463	1	0	0	0	0	0	0	0	1	1804	1368	48	4		4	C15orf38	15	90447196	Silent	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	715740	90447196	12084196	42	43433										
CORO7	0	genome.wustl.edu	37	chr16	4408084	4408084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	acagccgtgtctgggaacacGtcatcctggaagaactcttt	10	11	3	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	16	4408084	4408084	G	A	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	silent	c.2478	p.D826	0.980	pfam_DUF1900	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	10	0	0	11	5	31.25	-	-	-	A	4408084	G	A	4408084	2	1	463	1	0	0	0	0	0	0	0	1	3789	1136	40	1		1	CORO7	16	4408084	Silent	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		4408084	85946669	43	43434										
SEC14L5	0	genome.wustl.edu	37	chr16	5038173	5038173	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gcaggtgttgagcacgtggtCttcgtgcagacaaacatctt	12	9	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	16	5038173	5038173	C	T	SNP	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	silent	c.237	p.V79	1.000	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	10	0	0	6	5	45.45	-	-	-	T	5038173	C	T	5038173	2	4	463	1	0	0	0	0	0	0	0	1	14073	900	32	2		2	SEC14L5	16	5038173	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	630089	5038173	85316580	44	43435										
GRIN2A	0	genome.wustl.edu	37	chr16	9934882	9934883	+	Frame_Shift_Ins	INS	-	-	A													0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcgtaagtaaacttcacagtINStctggaaagcttcttcagaa							TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	16	9934882	9934883	-	A	INS	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1408_1407	p.T469fs	0.838:0.008	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	120	0	0	97	24	19.83	-	-	-	A	9934883	-	A	9934882	7	5	463	1	0	1	1	0	0	0	0	0	6830	1725	60	0	3018	0	GRIN2A	16	9934882	Frame_Shift_Ins	INS	-	TCGA-B6-A0X1-01A-11D-A10G-09	4896709	9934882	80419871	45	43436										
XPO6	0	genome.wustl.edu	37	chr16	28187312	28187312	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cagagcttgttccggataaaGtaaggtaaggttttatggtg	13	4	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	16	28187312	28187312	G	T	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	nonsense	c.312	p.Y104*	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	104	0	0	68	55	44.72	-	-	-	T	28187312	G	T	28187312	4	4	463	1	0	0	0	0	0	1	0	0	17545	1024	36	4	3149	4	XPO6	16	28187312	Nonsense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	18252430	28187312	62167441	46	43437										
POLR2C	0	genome.wustl.edu	37	chr16	57503883	57503883	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ctccctgcagacatcctcatCgtcaagttgagaaagggcca	9	13	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	16	57503883	57503883	C	T	SNP	POLR2C	ENST00000219252	human	ensembl	69_37n	1	known	silent	c.450	p.I150	0.852	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_insert,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_insert,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978	24	0	0	10	13	56.52	-	-	-	T	57503883	C	T	57503883	2	4	463	1	0	0	0	0	0	0	0	1	12290	874	31	1		1	POLR2C	16	57503883	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	29316571	57503883	32850870	47	43438										
TP53	0	genome.wustl.edu	37	chr17	7576852	7576852	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	agaggtcccaagacttagtaCctgaagggtgaaatattctc	10	8	1	4			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	17	7576852	7576852	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.993+1	e8+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	141	0	0	52	75	59.06	-	-	-	A	7576852	C	A	7576852	5	1	463	1	0	0	0	0	0	0	1	0	16477	521	18	4	288	4	TP53	17	7576852	Splice_Site	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		7576852	73618358	48	43439										
USP43	0	genome.wustl.edu	37	chr17	9586235	9586236	+	Frame_Shift_Del	DEL	CT	CT	-													0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	gtgagagcaaggtgctaatcCtcttctgtaacttggtgggg							TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	17	9586235	9586236	CT	-	DEL	USP43	ENST00000285199	human	ensembl	69_37n	1	known	frame_shift_del	c.1201_1202	p.F402fs	1.000:1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	101	0	0	34	49	58.33	-	-	-	-	9586236	CT	-	9586235	7	5	463	1	0	1	0	1	0	0	0	0	17171	681	24	0	1227	0	USP43	17	9586235	Frame_Shift_Del	DEL	CT	TCGA-B6-A0X1-01A-11D-A10G-09	2009383	9586235	71608975	49	43440										
GPATCH8	0	genome.wustl.edu	37	chr17	42476445	42476445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	ttcctggagcctgatctctgGgaagggctcctggtgctgcg	15	11	1	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	17	42476445	42476445	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	silent	c.3000	p.S1000	0.996	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	35	0	0	13	28	68.29	-	-	-	A	42476445	G	A	42476445	2	1	463	1	0	0	0	0	0	0	0	1	6644	1219	43	4		4	GPATCH8	17	42476445	Silent	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09	32890210	42476445	38718765	50	43441										
TLE2	0	genome.wustl.edu	37	chr19	3028349	3028349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tcgctgcatttccgtcttctCgctggccagcttctcacatt	7	15	3	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	19	3028349	3028349	C	T	SNP	TLE2	ENST00000262953	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	1.000	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	23	0	0	15	12	44.44	-	-	-	T	3028349	C	T	3028349	3	4	463	1	0	0	0	0	1	0	0	0	16034	893	31	1	2152	1	TLE2	19	3028349	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09		3028349	56100634	51	43442										
TM6SF2	0	genome.wustl.edu	37	chr19	19377377	19377377	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	aaggtgagagcataggcagcCaggccgcagaaaggcaggac	16	9	0	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	19	19377377	19377377	C	A	SNP	TM6SF2	ENST00000389363	human	ensembl	69_37n	-1	known	silent	c.846	p.L282	0.999	pfam_Transmembrane_6/97	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996	21	0	0	10	12	54.55	-	-	-	A	19377377	C	A	19377377	2	1	463	1	0	0	0	0	0	0	0	1	16068	581	21	4		4	TM6SF2	19	19377377	Silent	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	16349028	19377377	39751606	52	43443										
OSBP2	0	genome.wustl.edu	37	chr22	31302270	31302270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tggcctgtgtgtacaagggcGgctactgggaggccaaggag	18	8	0	0			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	22	31302270	31302270	G	A	SNP	OSBP2	ENST00000332585	human	ensembl	69_37n	1	known	missense	c.2695	p.G899S	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792	23	0	0	13	18	58.06	-	-	-	A	31302270	G	A	31302270	3	1	463	1	0	0	0	0	1	0	0	0	11347	1116	39	1	2749	1	OSBP2	22	31302270	Missense_Mutation	SNP	G	TCGA-B6-A0X1-01A-11D-A10G-09		31302270	20002296	53	43444										
PRKX	0	genome.wustl.edu	37	chrX	3592796	3592796	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	caccaggtgcacccgcccgaAcgtcccagtgcctggagaga	12	16	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	X	3592796	3592796	A	C	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.178	p.F60V	0.991	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	52	0	0	58	21	26.58	-	-	-	C	3592796	A	C	3592796	3	2	463	1	0	0	0	0	1	0	0	0	12608	43	2	5	926	5	PRKX	23	3592796	Missense_Mutation	SNP	A	TCGA-B6-A0X1-01A-11D-A10G-09		3592796	151677764	54	43445										
WDR45	0	genome.wustl.edu	37	chrX	48932526	48932526	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	cctctctgttgcagtttccaTcaggagtgaagacatatttg	9	9	2	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	X	48932526	48932526	T	C	SNP	WDR45	ENST00000322995	human	ensembl	69_37n	-1	known	missense	c.1052	p.D351G	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998	78	0	0	56	39	41.05	-	-	-	C	48932526	T	C	48932526	3	2	463	1	0	0	0	0	1	0	0	0	17394	1435	50	5	67	5	WDR45	23	48932526	Missense_Mutation	SNP	T	TCGA-B6-A0X1-01A-11D-A10G-09	45339730	48932526	106338034	55	43446										
GDPD2	0	genome.wustl.edu	37	chrX	69650939	69650939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tgagccactgcccccctcagCctcccggttataagcatgag	9	16	1	2			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	X	69650939	69650939	C	G	SNP	GDPD2	ENST00000453994	human	ensembl	69_37n	1	known	missense	c.1423	p.P475A	0.013	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	70	0	0	63	34	35.05	-	-	-	G	69650939	C	G	69650939	3	3	463	1	0	0	0	0	1	0	0	0	6376	739	26	4	1469	4	GDPD2	23	69650939	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	20718413	69650939	85619621	56	43447										
RBM41	0	genome.wustl.edu	37	chrX	106331858	106331858	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	7	0.415343219928482	1.56492073048364	2.68272125225768	1.00602046959663	1	1	0	tggagactggggcctttaccCtgtgctgcctgttttccctt	11	12	0	1			TCGA-B6-A0X1-01A-11D-A10G-09	TCGA-B6-A0X1-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a492abf9-0cd3-402c-89e2-c49d650ef540	8c39f4bf-c997-41a9-8b36-37e9e9e6124b	X	106331858	106331858	C	G	SNP	RBM41	ENST00000372479	human	ensembl	69_37n	-1	known	missense	c.735	p.Q245H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682	127	0	0	75	53	41.41	-	-	-	G	106331858	C	G	106331858	3	3	463	1	0	0	0	0	1	0	0	0	13218	680	24	4	527	4	RBM41	23	106331858	Missense_Mutation	SNP	C	TCGA-B6-A0X1-01A-11D-A10G-09	36680919	106331858	48938702	57	43448										
CYP4Z1	0	genome.wustl.edu	37	chr1	47533338	47533338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctggttctatggccacaaggAggtaagaggagaaaattagt	13	5	1	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	47533338	47533338	A	C	SNP	CYP4Z1	ENST00000334194	human	ensembl	69_37n	1	known	missense	c.176	p.E59A	0.060	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160	28	0	0	27	19	41.3	-	-	-	C	47533338	A	C	47533338	3	2	464	1	0	0	0	0	1	0	0	0	4225	318	11	5	178	5	CYP4Z1	1	47533338	Missense_Mutation	SNP	A	TCGA-B6-A0X4-01A-11D-A10G-09		47533338	201717283	1	43449										
WDR3	0	genome.wustl.edu	37	chr1	118491067	118491067	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgacttggcttcagggaatCtgctggagacaatagatgca	12	7	2	3			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	118491067	118491067	C	A	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	1	known	missense	c.1462	p.L488M	0.996	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	37	0	0	34	30	46.88	-	-	-	A	118491067	C	A	118491067	3	1	464	1	0	0	0	0	1	0	0	0	17382	912	32	2	1508	2	WDR3	1	118491067	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09	70957729	118491067	130759554	2	43450										
ATP8B2	0	genome.wustl.edu	37	chr1	154303935	154303935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ttcagttccgccacaagagcGataaccaggtgaataaccgc	9	12	1	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	154303935	154303935	G	A	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.418	p.D140N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	27	0	0	28	39	58.21	-	-	-	A	154303935	G	A	154303935	3	1	464	1	0	0	0	0	1	0	0	0	1199	1058	37	1	440	1	ATP8B2	1	154303935	Missense_Mutation	SNP	G	TCGA-B6-A0X4-01A-11D-A10G-09	35812868	154303935	94946686	3	43451										
FCGR2B	0	genome.wustl.edu	37	chr1	161641360	161641360	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agctacaggttcaaggccaaCaacaatgacagcggggagta	12	9	1	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	161641360	161641360	C	T	SNP	FCGR2B	ENST00000358671	human	ensembl	69_37n	1	known	silent	c.312	p.N104	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR2B	HGNC	ENSG00000072694	30	0	0	37	13	26	-	-	-	T	161641360	C	T	161641360	2	4	464	1	0	0	0	0	0	0	0	1	5828	477	17	4		4	FCGR2B	1	161641360	Silent	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09	7337425	161641360	87609261	4	43452										
KCTD3	0	genome.wustl.edu	37	chr1	215759936	215759936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgcaaaggtggttggagggcCacatggagacaaagacaaaa	14	6	0	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	215759936	215759936	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	missense	c.725	p.P242L	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	64	0	0	52	43	45.26	-	-	-	T	215759936	C	T	215759936	3	4	464	1	0	0	0	0	1	0	0	0	8164	594	21	4	759	4	KCTD3	1	215759936	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09	54118576	215759936	33490685	5	43453										
VIL1	0	genome.wustl.edu	37	chr2	219301940	219301940	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcaagacccatcccagcgggCgtgaccctgagacccccatc	9	18	1	3			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	2	219301940	219301940	C	A	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	missense	c.2065	p.R689S	1.000	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	18	0	0	16	7	30.43	-	-	-	A	219301940	C	A	219301940	3	1	464	1	0	0	0	0	1	0	0	0	17261	768	27	3	2127	3	VIL1	2	219301940	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		219301940	23897433	6	43454										
IFT80	0	genome.wustl.edu	37	chr3	160095282	160095282	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actgctccacagtgagcttcTacacttttttccactcttcc	4	15	2	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	3	160095282	160095282	T	A	SNP	IFT80	ENST00000326448	human	ensembl	69_37n	-1	known	silent	c.306	p.V102	0.850	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT80	HGNC	ENSG00000068885	94	0	0	114	60	34.48	-	-	-	A	160095282	T	A	160095282	2	1	464	1	0	0	0	0	0	0	0	1	7618	1509	53	5		5	IFT80	3	160095282	Silent	SNP	T	TCGA-B6-A0X4-01A-11D-A10G-09		160095282	37927148	7	43455										
AGXT2	0	genome.wustl.edu	37	chr5	35013131	35013131	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ttgaagtgctgcaggcatttCgccaaagatttggcaatctc	10	9	1	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	5	35013131	35013131	C	T	SNP	AGXT2	ENST00000231420	human	ensembl	69_37n	-1	known	silent	c.1116	p.A372	0.272	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2	HGNC	ENSG00000113492	22	0	0	12	13	52	-	-	-	T	35013131	C	T	35013131	2	4	464	1	0	0	0	0	0	0	0	1	405	871	31	1		1	AGXT2	5	35013131	Silent	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		35013131	145902129	8	43456										
GRIK2	0	genome.wustl.edu	37	chr6	102337557	102337557	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cactggctattacctatgttCgagagaaggtcatcgacttt	9	9	1	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	102337557	102337557	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	nonsense	c.1567	p.R523*	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	36	0	0	51	18	26.09	-	-	-	T	102337557	C	T	102337557	4	4	464	1	0	0	0	0	0	1	0	0	6825	876	31	1	1609	1	GRIK2	6	102337557	Nonsense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		102337557	68777510	9	43457										
RNF217	0	genome.wustl.edu	37	chr6	125397899	125397899	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgagagataccgccagctcCgattttttggagaccacaca	10	11	0	3			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	125397899	125397899	C	T	SNP	RNF217	ENST00000560949	human	ensembl	69_37n	1	known	nonsense	c.673	p.R225*	1.000	smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373	37	0	0	43	36	45.57	-	-	-	T	125397899	C	T	125397899	4	4	464	1	0	0	0	0	0	1	0	0	13567	644	23	1	516	1	RNF217	6	125397899	Nonsense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09	23060342	125397899	45717168	10	43458										
MLL3	0	genome.wustl.edu	37	chr7	151945601	151945601	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tttatcttcaatttgatcttCgccacaaatatgcttcactt	3	10	4	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	7	151945601	151945601	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.1918	p.E640*	0.108	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	31	0	0	49	32	39.51	-	-	-	A	151945601	C	A	151945601	4	1	464	1	0	0	0	0	0	1	0	0	9693	893	31	3	13001	3	MLL3	7	151945601	Nonsense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		151945601	7193062	11	43459										
GATA3	0	genome.wustl.edu	37	chr10	8115862	8115863	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	tccagacacatgtcctccctINSgagccacatctcgcccttca							TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	10	8115862	8115863	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1211_1212	p.S405fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	59	0	0	22	5	18.52	-	-	-	C	8115863	-	C	8115862	7	5	464	1	0	1	1	0	0	0	0	0	6305	1580	55	0	1229	0	GATA3	10	8115862	Frame_Shift_Ins	INS	-	TCGA-B6-A0X4-01A-11D-A10G-09		8115862	127418885	12	43460										
SLC22A25	0	genome.wustl.edu	37	chr11	62931501	62931501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tcatgagggaagccagggctCccccaatattagcaaagttt	10	10	1	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	11	62931501	62931501	C	T	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	missense	c.1439	p.G480E	0.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	40	0	0	46	22	32.35	-	-	-	T	62931501	C	T	62931501	3	4	464	1	0	0	0	0	1	0	0	0	14543	855	30	2	208	2	SLC22A25	11	62931501	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		62931501	72075015	13	43461										
SACS	0	genome.wustl.edu	37	chr13	23909753	23909753	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acatttagagctccagtactCttatctatttcacaaataga	4	9	3	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	13	23909753	23909753	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8262	p.K2754N	0.021	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	45	0	0	69	28	28.87	-	-	-	A	23909753	C	A	23909753	3	1	464	1	0	0	0	0	1	0	0	0	13890	912	32	2	5481	2	SACS	13	23909753	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		23909753	91260125	14	43462										
KIAA0182	0	genome.wustl.edu	37	chr16	85701963	85701963	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	NA	0	1	1	0	gaagatggagaagatgaggaGgaagtccccaagcgcaagtg							TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	16	85701963	85701963	G	-	DEL	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	frame_shift_del	c.3348	p.E1117fs	0.370	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	23	0	0	14	10	40	-	-	-	-	85701963	G	-	85701963	7	5	464	1	0	1	0	1	0	0	0	0	8211	991	35	0	3402	0	KIAA0182	16	85701963	Frame_Shift_Del	DEL	G	TCGA-B6-A0X4-01A-11D-A10G-09		85701963	4652790	15	43463										
MAP2K4	0	genome.wustl.edu	37	chr17	11998898	11998898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tcattcttttccagagaattCggtcaacagtggatgaaaaa	8	7	3	2			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	17	11998898	11998898	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.433	p.R145W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	118	0	0	97	64	39.75	-	-	-	T	11998898	C	T	11998898	3	4	464	1	0	0	0	0	1	0	0	0	9310	875	31	1	414	1	MAP2K4	17	11998898	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		11998898	69196312	16	43464										
MUC16	0	genome.wustl.edu	37	chr19	9005718	9005718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtccactctggtggctactcCatccttctcaggcctgggga	11	14	2	0			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	9005718	9005718	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.39688	p.G13230R	0.016	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	21	0	0	24	14	35.9	-	-	-	T	9005718	C	T	9005718	3	4	464	1	0	0	0	0	1	0	0	0	10045	603	21	4	3991	4	MUC16	19	9005718	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		9005718	50123265	17	43465										
ZNF229	0	genome.wustl.edu	37	chr19	44933794	44933794	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gacaagcaggtttgaacttcGaccaaatgccttcccacact	7	13	0	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	44933794	44933794	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	nonsense	c.1162	p.R388*	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	37	0	0	23	31	57.41	-	-	-	A	44933794	G	A	44933794	4	1	464	1	0	0	0	0	0	1	0	0	17878	1066	37	1	1319	1	ZNF229	19	44933794	Nonsense_Mutation	SNP	G	TCGA-B6-A0X4-01A-11D-A10G-09	35928076	44933794	14195189	18	43466										
SSR4	0	genome.wustl.edu	37	chrX	153063795	153063795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttttttcagggcacttggaaCgggccctgggtgtccactga	13	10	1	1			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	X	153063795	153063795	C	T	SNP	SSR4	ENST00000447375	human	ensembl	69_37n	1	known	missense	c.269	p.T90M	0.177	pfam_TRAP-delta	pfam_TRAP-delta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SSR4	HGNC	ENSG00000180879	25	0	0	17	20	54.05	-	-	-	T	153063795	C	T	153063795	3	4	464	1	0	0	0	0	1	0	0	0	15284	535	19	1	451	1	SSR4	23	153063795	Missense_Mutation	SNP	C	TCGA-B6-A0X4-01A-11D-A10G-09		153063795	2206765	19	43467										
PADI4	0	genome.wustl.edu	37	chr1	17668504	17668504	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	gccctctcactacctgatggTccccggtggaaagcacaaca	9	15	1	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	1	17668504	17668504	T	C	SNP	PADI4	ENST00000375448	human	ensembl	69_37n	1	known	missense	c.719	p.V240A	0.001	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339	15	0	0	5	7	58.33	-	-	-	C	17668504	T	C	17668504	3	2	465	1	0	0	0	0	1	0	0	0	11453	1667	58	5	745	5	PADI4	1	17668504	Missense_Mutation	SNP	T	TCGA-B6-A0X5-01A-21D-A10G-09		17668504	231582117	1	43468										
KCND3	0	genome.wustl.edu	37	chr1	112525097	112525097	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	aacacctcggggtcccggtcGaagaagtactccttggtgtc	12	12	0	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	1	112525097	112525097	G	A	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	silent	c.252	p.F84	0.747	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	11	0	0	4	7	63.64	-	-	-	A	112525097	G	A	112525097	2	1	465	1	0	0	0	0	0	0	0	1	8074	1049	37	1		1	KCND3	1	112525097	Silent	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	94856593	112525097	136725524	2	43469										
DENND2C	0	genome.wustl.edu	37	chr1	115168327	115168327	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	tgtttcttattttcattctcActttgatcatggcttttggt	6	7	4	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	1	115168327	115168327	A	G	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	silent	c.279	p.S93	0.805	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	147	0	0	141	17	10.76	-	-	-	G	115168327	A	G	115168327	2	3	465	1	0	0	0	0	0	0	0	1	4466	156	6	5		5	DENND2C	1	115168327	Silent	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	2643230	115168327	134082294	3	43470										
DENND4B	0	genome.wustl.edu	37	chr1	153912954	153912954	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	acacagatgacatcagcaggCgggtcatgcagatcaaagta	11	9	3	3			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	1	153912954	153912954	C	T	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	silent	c.1455	p.P485	0.008	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	15	0	0	17	15	46.88	-	-	-	T	153912954	C	T	153912954	2	4	465	1	0	0	0	0	0	0	0	1	4470	755	27	1		1	DENND4B	1	153912954	Silent	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09	38744627	153912954	95337667	4	43471										
CENPL	0	genome.wustl.edu	37	chr1	173780350	173780350	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	cttcctgaccgattctaatcGtttctgcagaggagtggcac	10	11	2	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	1	173780350	173780350	G	A	SNP	CENPL	ENST00000356198	human	ensembl	69_37n	-1	known	nonsense	c.88	p.R30*	0.973	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334	55	0	0	47	19	28.79	-	-	-	A	173780350	G	A	173780350	4	1	465	1	0	0	0	0	0	1	0	0	3265	1153	40	1	1104	1	CENPL	1	173780350	Nonsense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	19867396	173780350	75470271	5	43472										
MYT1L	0	genome.wustl.edu	37	chr2	2001120	2001120	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ctatgccttgatttctccatCtgtaaaatataaaaagcaat	4	8	2	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	2	2001120	2001120	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	MYT1L	HGNC	ENSG00000186487	20	0	0	19	14	42.42	-	-	-	T	2001120	C	T	2001120	5	4	465	1	0	0	0	0	0	0	1	0	10179	927	32	2		2	MYT1L	2	2001120	Splice_Site	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09		2001120	241198253	6	43473										
MAT2A	0	genome.wustl.edu	37	chr2	85769379	85769379	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	gaagaggtttgtcttgatgaAatgagggatgccctaaagga	14	4	1	4			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	2	85769379	85769379	A	G	SNP	MAT2A	ENST00000306434	human	ensembl	69_37n	1	known	silent	c.651	p.E217	0.975	pfam_S-AdoMet_synt_central,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906	26	0	0	22	19	46.34	-	-	-	G	85769379	A	G	85769379	2	3	465	1	0	0	0	0	0	0	0	1	9401	11	1	5		5	MAT2A	2	85769379	Silent	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	83768259	85769379	157429994	7	43474										
TTN	0	genome.wustl.edu	37	chr2	179427225	179427225	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	tcccacttaattgtagctgtAttacgggtcacatcaacaag	7	10	2	0			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	2	179427225	179427225	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.75930	p.N25310	0.981	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	66	0	0	47	43	47.78	-	-	-	G	179427225	A	G	179427225	2	3	465	1	0	0	0	0	0	0	0	1	16832	446	16	5		5	TTN	2	179427225	Silent	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	93657846	179427225	63772148	8	43475										
SPP2	0	genome.wustl.edu	37	chr2	234959682	234959682	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	agtgcctctgtggtaaaagtGaattcccagtcactgagtcc	10	10	2	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	2	234959682	234959682	G	T	SNP	SPP2	ENST00000168148	human	ensembl	69_37n	1	known	silent	c.153	p.V51	0.995	pfam_Prot_inh_cystat	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080	44	0	0	33	30	47.62	-	-	-	T	234959682	G	T	234959682	2	4	465	1	0	0	0	0	0	0	0	1	15178	1277	45	2		2	SPP2	2	234959682	Silent	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	55532457	234959682	8239691	9	43476										
SATB1	0	genome.wustl.edu	37	chr3	18390811	18390811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ttctttatattctgccacatCgacctctaaaccggaattgt	5	11	3	0			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	3	18390811	18390811	C	T	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.2143	p.D715N	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	77	0	0	79	13	14.13	-	-	-	T	18390811	C	T	18390811	3	4	465	1	0	0	0	0	1	0	0	0	13940	884	31	1	152	1	SATB1	3	18390811	Missense_Mutation	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09		18390811	179631619	10	43477										
MST1	0	genome.wustl.edu	37	chr3	49722303	49722303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ccaaccatacctcatagcccGtgagaggcatatggctggga	11	12	1	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	3	49722303	49722303	G	A	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.1637	p.T546M	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	17	0	0	19	5	20.83	-	-	-	A	49722303	G	A	49722303	3	1	465	1	0	0	0	0	1	0	0	0	9962	1145	40	1	556	1	MST1	3	49722303	Missense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	31331492	49722303	148300127	11	43478										
MYLK	0	genome.wustl.edu	37	chr3	123512533	123512533	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	acacttcttacccgcccttcGaacttggcggtggctccttc	8	16	1	0			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	3	123512533	123512533	G	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	silent	c.156	p.F52	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	13	0	0	19	9	32.14	-	-	-	A	123512533	G	A	123512533	2	1	465	1	0	0	0	0	0	0	0	1	10128	1049	37	1		1	MYLK	3	123512533	Silent	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	73790230	123512533	74509897	12	43479										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	49	0	0	35	22	38.6	-	-	-	G	178952085	A	G	178952085	3	3	465	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	55439552	178952085	19070345	13	43480										
RGS12	0	genome.wustl.edu	37	chr4	3318059	3318059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	atgagagggagccctgcggaTttcgtgggcctccgagctgg	17	10	0	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	4	3318059	3318059	T	G	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	missense	c.162	p.D54E	0.002	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	11	0	0	9	18	66.67	-	-	-	G	3318059	T	G	3318059	3	3	465	1	0	0	0	0	1	0	0	0	13379	1490	52	5	164	5	RGS12	4	3318059	Missense_Mutation	SNP	T	TCGA-B6-A0X5-01A-21D-A10G-09		3318059	187836217	14	43481										
FAT1	0	genome.wustl.edu	37	chr4	187539727	187539727	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ttatccacagctctaacaaaGaaagtgaagaattcattttc	5	8	2	3			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	4	187539727	187539727	G	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.8013	p.F2671L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	32	0	0	29	29	50	-	-	-	T	187539727	G	T	187539727	3	4	465	1	0	0	0	0	1	0	0	0	5735	933	33	2	5825	2	FAT1	4	187539727	Missense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	184221668	187539727	3614549	15	43482										
AP3B1	0	genome.wustl.edu	37	chr5	77523987	77523987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ccttcagagctcgctgaaaaGtgcttatggacaggagtgca	12	9	1	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	5	77523987	77523987	G	C	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.356	p.T119S	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	68	0	0	33	37	52.86	-	-	-	C	77523987	G	C	77523987	3	2	465	1	0	0	0	0	1	0	0	0	745	1029	36	4	3024	4	AP3B1	5	77523987	Missense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09		77523987	103391273	16	43483										
BHMT	0	genome.wustl.edu	37	chr5	78415130	78415130	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	agctggctcaaacgtcatgcAgaccttcaccttctatgcga	8	13	4	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	5	78415130	78415130	A	C	SNP	BHMT	ENST00000274353	human	ensembl	69_37n	1	known	missense	c.215	p.Q72P	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT	HGNC	ENSG00000145692	34	0	0	42	5	10.64	-	-	-	C	78415130	A	C	78415130	3	2	465	1	0	0	0	0	1	0	0	0	1430	188	7	5	225	5	BHMT	5	78415130	Missense_Mutation	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	891143	78415130	102500130	17	43484										
SMOC2	0	genome.wustl.edu	37	chr6	169053691	169053691	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	cgggtggtgcactggtacttCaaactactggataaaaactc	10	9	1	0			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	6	169053691	169053691	C	A	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.1101	p.F367L	1.000	pfam_SPARC/Testican_Ca-bd-dom,pfscan_EF_HAND_2	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	47	0	0	43	8	15.69	-	-	-	A	169053691	C	A	169053691	3	1	465	1	0	0	0	0	1	0	0	0	14891	825	29	2	1143	2	SMOC2	6	169053691	Missense_Mutation	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09		169053691	2061376	18	43485										
TAS2R16	0	genome.wustl.edu	37	chr7	122635425	122635425	+	Frame_Shift_Del	DEL	A	A	-													0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	aaccagaatgtaaggatattAaaaaattcccaggtgattgt							TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	7	122635425	122635425	A	-	DEL	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	frame_shift_del	c.264	p.F88fs	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	76	0	0	55	30	35.29	-	-	-	-	122635425	A	-	122635425	7	5	465	1	0	1	0	1	0	0	0	0	15661	359	13	0	615	0	TAS2R16	7	122635425	Frame_Shift_Del	DEL	A	TCGA-B6-A0X5-01A-21D-A10G-09		122635425	36503238	19	43486										
XPO7	0	genome.wustl.edu	37	chr8	21844661	21844661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	tcttcctccagggtgctccaGctgatgaacctaacagattc	8	13	1	3			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	8	21844661	21844661	G	T	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	missense	c.1614	p.Q538H	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	37	0	0	4	18	81.82	-	-	-	T	21844661	G	T	21844661	3	4	465	1	0	0	0	0	1	0	0	0	17546	962	34	4	1693	4	XPO7	8	21844661	Missense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09		21844661	124519361	20	43487										
RPS20	0	genome.wustl.edu	37	chr8	56985781	56985781	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ctcatctggaaacgatcccaCgtcttagaaccttcaccaca	5	15	4	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	8	56985781	56985781	C	G	SNP	RPS20	ENST00000009589	human	ensembl	69_37n	-1	known	silent	c.228	p.T76	0.579	pfam_Ribosomal_S10,superfamily_Ribosomal_S10,prints_Ribosomal_S10,tigrfam_Ribosomal_S10_euk/arc	pfam_Ribosomal_S10,superfamily_Ribosomal_S10,prints_Ribosomal_S10,tigrfam_Ribosomal_S10_euk/arc	-	no_errors	RPS20	HGNC	ENSG00000008988	96	0	0	47	61	55.96	-	-	-	G	56985781	C	G	56985781	2	3	465	1	0	0	0	0	0	0	0	1	13718	523	19	3		3	RPS20	8	56985781	Silent	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09	35141120	56985781	89378241	21	43488										
PHF20L1	0	genome.wustl.edu	37	chr8	133829783	133829784	+	Frame_Shift_Ins	INS	-	-	G													0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	atggaagaggagctccagcaINSgcagcaggtaaaagaaaaaa							TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	8	133829783	133829784	-	G	INS	PHF20L1	ENST00000315808	human	ensembl	69_37n	1	known	frame_shift_ins	c.1572_1573	p.A524fs	0.846:0.842	NULL	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	26	0	0	28	9	24.32	-	-	-	G	133829784	-	G	133829783	7	5	465	1	0	1	1	0	0	0	0	0	11906	175	7	0	1620	0	PHF20L1	8	133829783	Frame_Shift_Ins	INS	-	TCGA-B6-A0X5-01A-21D-A10G-09	76844002	133829783	12534239	22	43489										
SYVN1	0	genome.wustl.edu	37	chr11	64897543	64897543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	accaggggcagggccagcctCtggggcagagccagagcctg	17	13	1	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	11	64897543	64897543	C	G	SNP	SYVN1	ENST00000377190	human	ensembl	69_37n	-1	known	missense	c.1339	p.E447Q	0.043	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298	10	0	0	8	9	50	-	-	-	G	64897543	C	G	64897543	3	3	465	1	0	0	0	0	1	0	0	0	15579	922	32	2	530	2	SYVN1	11	64897543	Missense_Mutation	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09		64897543	70108973	23	43490										
NHLRC3	0	genome.wustl.edu	37	chr13	39616426	39616426	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ggaggattgaataacagattGatcaaactgtcccaaggtac	10	7	1	3			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	13	39616426	39616426	G	A	SNP	NHLRC3	ENST00000379600	human	ensembl	69_37n	1	known	silent	c.570	p.L190	0.994	NULL	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC3	HGNC	ENSG00000188811	190	1	0.52	24	85	77.98	-	-	-	A	39616426	G	A	39616426	2	1	465	1	0	0	0	0	0	0	0	1	10479	1281	45	2		2	NHLRC3	13	39616426	Silent	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09		39616426	75553452	24	43491										
NRXN3	0	genome.wustl.edu	37	chr14	80328256	80328256	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	aaggagaagcagcagagctcGaagagcggccacaagaaaca	13	9	0	4			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	14	80328256	80328256	G	A	SNP	NRXN3	ENST00000335750	human	ensembl	69_37n	1	known	silent	c.3135	p.S1045	0.092	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	28	0	0	12	13	52	-	-	-	A	80328256	G	A	80328256	2	1	465	1	0	0	0	0	0	0	0	1	10740	1045	37	1		1	NRXN3	14	80328256	Silent	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09		80328256	27021284	25	43492										
SLC13A5	0	genome.wustl.edu	37	chr17	6590917	6590918	+	Frame_Shift_Ins	INS	-	-	A													0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	gggtggccacaggcaacatgINSaaggcaaaggaggcactcag							TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	17	6590917	6590918	-	A	INS	SLC13A5	ENST00000433363	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1506_1505	p.M503fs	1.000:1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485	24	0	0	21	21	50	-	-	-	A	6590918	-	A	6590917	7	5	465	1	0	1	1	0	0	0	0	0	14484	1281	45	0	208	0	SLC13A5	17	6590917	Frame_Shift_Ins	INS	-	TCGA-B6-A0X5-01A-21D-A10G-09		6590917	74604293	26	43493										
ALOXE3	0	genome.wustl.edu	37	chr17	8011882	8011882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	agatgcgtcactgggataatAgtagcccacgatttctgaga	11	8	2	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	17	8011882	8011882	A	C	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	missense	c.1984	p.Y662D	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	14	0	0	17	7	29.17	-	-	-	C	8011882	A	C	8011882	3	2	465	1	0	0	0	0	1	0	0	0	542	420	15	5	563	5	ALOXE3	17	8011882	Missense_Mutation	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09	1420965	8011882	73183328	27	43494										
KHSRP	0	genome.wustl.edu	37	chr19	6416411	6416411	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	ggcctggtccaactgggcagAgaggaccctagaaggaagga	16	9	0	2			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	19	6416411	6416411	A	G	SNP	KHSRP	ENST00000398148	human	ensembl	69_37n	-1	known	missense	c.1496	p.L499P	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHSRP	HGNC	ENSG00000088247	9	0	0	3	5	62.5	-	-	-	G	6416411	A	G	6416411	3	3	465	1	0	0	0	0	1	0	0	0	8203	304	11	5	663	5	KHSRP	19	6416411	Missense_Mutation	SNP	A	TCGA-B6-A0X5-01A-21D-A10G-09		6416411	52712572	28	43495										
NAPA	0	genome.wustl.edu	37	chr19	47994082	47994082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	cccgggaatcagagaaagctGggaacagctcctcatacttt	10	11	2	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	19	47994082	47994082	G	A	SNP	NAPA	ENST00000263354	human	ensembl	69_37n	-1	known	missense	c.698	p.P233L	1.000	prints_NSF_attach	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402	19	0	0	9	19	67.86	-	-	-	A	47994082	G	A	47994082	3	1	465	1	0	0	0	0	1	0	0	0	10233	1348	47	4	201	4	NAPA	19	47994082	Missense_Mutation	SNP	G	TCGA-B6-A0X5-01A-21D-A10G-09	41577671	47994082	11134901	29	43496										
ATP11C	0	genome.wustl.edu	37	chrX	138845570	138845570	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	3	0.722627789076628	1.36923076923077	1.97777777777778	1.18666666666667	1	1	0	cttttaaattcttcaccattCtgacaatctaaatattaaat	1	8	4	1			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da42f10b-d515-4678-a038-ed9c92a8b56b	3ff1b637-7389-4e74-9e63-01642df895f4	X	138845570	138845570	C	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.2408	p.R803I	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	132	0	0	71	54	43.2	-	-	-	A	138845570	C	A	138845570	3	1	465	1	0	0	0	0	1	0	0	0	1125	913	32	2	1093	2	ATP11C	23	138845570	Missense_Mutation	SNP	C	TCGA-B6-A0X5-01A-21D-A10G-09		138845570	16424990	30	43497										
SH2D2A	0	genome.wustl.edu	37	chr1	156784870	156784870	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaccaggcaggggctgccccGtgctgcaggagccagtgggc	17	13	0	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	156784870	156784870	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	silent	c.267	p.H89	0.417	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	57	0	0	58	17	22.67	-	-	-	A	156784870	G	A	156784870	2	1	466	1	0	0	0	0	0	0	0	1	14320	1136	40	1		1	SH2D2A	1	156784870	Silent	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		156784870	92465751	1	43498										
USH2A	0	genome.wustl.edu	37	chr1	215820992	215820992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tggctttctgccccagccccGtgtactttgtttctatttgg	9	12	2	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	215820992	215820992	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.14663	p.T4888M	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	86	0	0	119	34	22.22	-	-	-	A	215820992	G	A	215820992	3	1	466	1	0	0	0	0	1	0	0	0	17133	1145	40	1	969	1	USH2A	1	215820992	Missense_Mutation	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09	59036122	215820992	33429629	2	43499										
CACNA2D2	0	genome.wustl.edu	37	chr3	50413608	50413608	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcaatggcaaacacatagccGttggctccaagctggaggca	11	11	1	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	50413608	50413608	G	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	silent	c.1638	p.N546	1.000	pfam_Cache_domain	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	78	0	0	81	33	28.95	-	-	-	A	50413608	G	A	50413608	2	1	466	1	0	0	0	0	0	0	0	1	2574	1136	40	1		1	CACNA2D2	3	50413608	Silent	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		50413608	147608822	3	43500										
CACNA1D	0	genome.wustl.edu	37	chr3	53765129	53765131	+	In_Frame_Del	DEL	AAC	AAC	-													0	0	1	0	NA	0	1	1	0	agagcctagaaaataaaaagAacaacaaaccagaagtcaac							TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	53765129	53765131	AAC	-	DEL	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	in_frame_del	c.2422_2424	p.N809in_frame_del	1.000:1.000:1.000	prints_LVDCC_a1dsu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	149	0	0	67	18	21.18	-	-	-	-	53765131	AAC	-	53765129	7	5	466	1	0	1	0	1	0	0	0	0	2566	246	9	0	2600	0	CACNA1D	3	53765129	In_Frame_Del	DEL	AAC	TCGA-B6-A0X7-01A-11D-A10M-09	3351521	53765129	144257301	4	43501										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	91	0	0	103	47	31.13	-	-	-	G	178952085	A	G	178952085	3	3	466	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-B6-A0X7-01A-11D-A10M-09	125186956	178952085	19070345	5	43502										
TLR10	0	genome.wustl.edu	37	chr4	38777170	38777172	+	In_Frame_Del	DEL	AAC	AAC	-													0	0	1	0	NA	0	1	1	0	gcatcaccctctgctgtcatAacaatactacaaaatatgta							TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	38777170	38777172	AAC	-	DEL	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	in_frame_del	c.42_40	p.V14in_frame_del	0.000:0.000:0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	110	0	0	89	20	18.35	-	-	-	-	38777172	AAC	-	38777170	7	5	466	1	0	1	0	1	0	0	0	0	16045	349	13	0	2397	0	TLR10	4	38777170	In_Frame_Del	DEL	AAC	TCGA-B6-A0X7-01A-11D-A10M-09		38777170	152377106	6	43503										
AASDH	0	genome.wustl.edu	37	chr4	57216157	57216157	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	ggatggactttaaggaatctCcaccactatttaagaagagt							TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	57216157	57216157	C	-	DEL	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	frame_shift_del	c.1760	p.G587fs	1.000	pfam_Acyl_carrier_prot-like,superfamily_Acyl_carrier_prot-like,pfscan_Acyl_carrier_prot-like	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	35	0	0	10	2	16.67	-	-	-	-	57216157	C	-	57216157	7	5	466	1	0	1	0	1	0	0	0	0	22	855	30	0	1556	0	AASDH	4	57216157	Frame_Shift_Del	DEL	C	TCGA-B6-A0X7-01A-11D-A10M-09	18438987	57216157	133938119	7	43504										
MLLT4	0	genome.wustl.edu	37	chr6	168312077	168312077	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gccggtatgtattgtccaacCagtacagacctgacatcagc	9	12	1	2			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	6	168312077	168312077	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	nonsense	c.1945	p.Q649*	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	158	0	0	250	44	14.97	-	-	-	T	168312077	C	T	168312077	4	4	466	1	0	0	0	0	0	1	0	0	9700	595	21	4	2003	4	MLLT4	6	168312077	Nonsense_Mutation	SNP	C	TCGA-B6-A0X7-01A-11D-A10M-09		168312077	2802990	8	43505										
ABCA13	0	genome.wustl.edu	37	chr7	48494768	48494768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcgccgacctgctgctgccaGtcctcttcgtggccttggcc	11	17	1	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	7	48494768	48494768	G	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.12700	p.V4234F	0.708	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	10	0	0	10	11	52.38	-	-	-	T	48494768	G	T	48494768	3	4	466	1	0	0	0	0	1	0	0	0	31	1029	36	4	12699	4	ABCA13	7	48494768	Missense_Mutation	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		48494768	110643895	9	43506										
CSMD3	0	genome.wustl.edu	37	chr8	113841931	113841931	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttacacttggagcactgtccTaggatctccaacttcgcccc	7	15	1	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	8	113841931	113841931	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.1843	p.R615	0.991	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	151	0	0	164	99	37.64	-	-	-	G	113841931	T	G	113841931	2	3	466	1	0	0	0	0	0	0	0	1	3978	1521	53	5		5	CSMD3	8	113841931	Silent	SNP	T	TCGA-B6-A0X7-01A-11D-A10M-09		113841931	32522091	10	43507										
FBXO18	0	genome.wustl.edu	37	chr10	5937117	5937117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggagatgccagaggacgagtGcccacttgctggtcttcaca	13	11	2	2			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	10	5937117	5937117	G	T	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	missense	c.121	p.A41S	0.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	27	0	0	37	9	19.57	-	-	-	T	5937117	G	T	5937117	3	4	466	1	0	0	0	0	1	0	0	0	5777	1319	46	4	132	4	FBXO18	10	5937117	Missense_Mutation	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		5937117	129597630	11	43508										
CEP290	0	genome.wustl.edu	37	chr12	88474172	88474172	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcttcatggttttcttgaagCctgatgtaaataaacatatg	7	6	3	2			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	12	88474172	88474172	C	T	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	silent	c.5019	p.Q1673	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	196	0	0	99	35	26.12	-	-	-	T	88474172	C	T	88474172	2	4	466	1	0	0	0	0	0	0	0	1	3282	753	26	4		4	CEP290	12	88474172	Silent	SNP	C	TCGA-B6-A0X7-01A-11D-A10M-09		88474172	45377723	12	43509										
WFIKKN1	0	genome.wustl.edu	37	chr16	683760	683760	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgctggaggagcccgaggcCgccggcggcatcgcccgcgt	18	15	0	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	16	683760	683760	C	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	69_37n	1	known	silent	c.1350	p.A450	0.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578	15	0	0	21	13	38.24	-	-	-	T	683760	C	T	683760	2	4	466	1	0	0	0	0	0	0	0	1	17455	639	23	1		1	WFIKKN1	16	683760	Silent	SNP	C	TCGA-B6-A0X7-01A-11D-A10M-09		683760	89670993	13	43510										
ARHGEF1	0	genome.wustl.edu	37	chr19	42410160	42410160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccccgagggccagctcgctgCcacggcccttcggaaaggta	13	16	0	0			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	19	42410160	42410160	C	T	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	missense	c.2420	p.A807V	0.992	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	44	0	0	39	18	31.58	-	-	-	T	42410160	C	T	42410160	3	4	466	1	0	0	0	0	1	0	0	0	895	739	26	4	2621	4	ARHGEF1	19	42410160	Missense_Mutation	SNP	C	TCGA-B6-A0X7-01A-11D-A10M-09		42410160	16718823	14	43511										
NTSR1	0	genome.wustl.edu	37	chr20	61340826	61340826	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgacggcgttcacgctggcGcggaagaagtcgctgcagag	17	10	1	3			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	61340826	61340826	G	A	SNP	NTSR1	ENST00000370501	human	ensembl	69_37n	1	known	silent	c.267	p.A89	0.987	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NT1_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_NT1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NT_rcpt,prints_P2_purnocptor	-	no_errors	NTSR1	HGNC	ENSG00000101188	32	0	0	56	23	29.11	-	-	-	A	61340826	G	A	61340826	2	1	466	1	0	0	0	0	0	0	0	1	10783	1074	38	1		1	NTSR1	20	61340826	Silent	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		61340826	1684694	15	43512										
KCNQ2	0	genome.wustl.edu	37	chr20	62038263	62038263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cgggatggagatggacgtgtCgctgtcccgcaggttcccct	15	12	0	1			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	62038263	62038263	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.2377	p.D793N	1.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	12	0	0	15	8	34.78	-	-	-	T	62038263	C	T	62038263	3	4	466	1	0	0	0	0	1	0	0	0	8137	884	31	1	269	1	KCNQ2	20	62038263	Missense_Mutation	SNP	C	TCGA-B6-A0X7-01A-11D-A10M-09	697437	62038263	987257	16	43513										
USP9X	0	genome.wustl.edu	37	chrX	41025364	41025364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tggaatgaagtgttttgagcGattcttcaaagctgtgaatt	11	4	2	3			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	X	41025364	41025364	G	A	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.2225	p.R742Q	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	187	0	0	106	39	26.71	-	-	-	A	41025364	G	A	41025364	3	1	466	1	0	0	0	0	1	0	0	0	17187	1058	37	1	2283	1	USP9X	23	41025364	Missense_Mutation	SNP	G	TCGA-B6-A0X7-01A-11D-A10M-09		41025364	114245196	17	43514										
ARID1A	0	genome.wustl.edu	37	chr1	27099031	27099031	+	Frame_Shift_Del	DEL	A	A	-													0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	gggccccagactccccagtcAaccagcagttccatggcaga							TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	27099031	27099031	A	-	DEL	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_del	c.3447	p.T1150fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	203	0	0	17	12	41.38	-	-	-	-	27099031	A	-	27099031	7	5	467	1	0	1	0	1	0	0	0	0	915	117	5	0	3497	0	ARID1A	1	27099031	Frame_Shift_Del	DEL	A	TCGA-B6-A1KC-01B-11D-A159-09		27099031	222151590	1	43515										
VCAM1	0	genome.wustl.edu	37	chr1	101190339	101190339	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	acagcacctttctggaaatgCaactctcaccttaattgcta	5	12	2	0			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	101190339	101190339	C	A	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	missense	c.821	p.A274E	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	162	0	0	86	18	17.31	-	-	-	A	101190339	C	A	101190339	3	1	467	1	0	0	0	0	1	0	0	0	17234	710	25	4	835	4	VCAM1	1	101190339	Missense_Mutation	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	74091308	101190339	148060282	2	43516										
AMPD1	0	genome.wustl.edu	37	chr1	115223011	115223011	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ggatagacgtaaactacaccGtccttcattttgaggtgata	9	8	1	3			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	115223011	115223011	G	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	silent	c.735	p.D245	0.460	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	98	0	0	25	77	75.49	-	-	-	A	115223011	G	A	115223011	2	1	467	1	0	0	0	0	0	0	0	1	585	1136	40	1		1	AMPD1	1	115223011	Silent	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	14032672	115223011	134027610	3	43517										
HRNR	0	genome.wustl.edu	37	chr1	152188526	152188526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	gacctgagccagacccatgtCggccactgctggaagaccaa	11	14	0	3			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	152188526	152188526	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5579	p.R1860Q	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	96	0	0	359	59	14.11	-	-	-	T	152188526	C	T	152188526	3	4	467	1	0	0	0	0	1	0	0	0	7410	884	31	1	2977	1	HRNR	1	152188526	Missense_Mutation	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	36965515	152188526	97062095	4	43518										
CRP	0	genome.wustl.edu	37	chr1	159683855	159683855	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	gtgaaggctttgagaggcttCgttaacggtgctttgaggga	16	5	0	3			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	159683855	159683855	C	A	SNP	CRP	ENST00000255030	human	ensembl	69_37n	-1	known	silent	c.135	p.T45	0.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693	89	0	0	49	9	15.52	-	-	-	A	159683855	C	A	159683855	2	1	467	1	0	0	0	0	0	0	0	1	3925	871	31	3		3	CRP	1	159683855	Silent	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	7495329	159683855	89566766	5	43519										
C1orf227	0	genome.wustl.edu	37	chr1	213009307	213009307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	tgggaacaggctctttggttGtggtatcagtaaaggactga	14	5	2	1			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	1	213009307	213009307	G	T	SNP	C1orf227	ENST00000332912	human	ensembl	69_37n	-1	known	missense	c.185	p.T62K	0.001	NULL	NULL	-	no_errors	C1orf227	HGNC	ENSG00000185523	103	0	0	71	16	18.39	-	-	-	T	213009307	G	T	213009307	3	4	467	1	0	0	0	0	1	0	0	0	2053	1377	48	4	119	4	C1orf227	1	213009307	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	53325452	213009307	36241314	6	43520										
ARPP21	0	genome.wustl.edu	37	chr3	35770832	35770832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	agtgcaggctcctcaggatcGctgtcccgcacccatccacc	9	18	1	0			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	3	35770832	35770832	G	A	SNP	ARPP21	ENST00000425289	human	ensembl	69_37n	1	putative	missense	c.580	p.A194T	0.001	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	ARPP21	HGNC	ENSG00000172995	29	0	0	5	23	82.14	-	-	-	A	35770832	G	A	35770832	3	1	467	1	0	0	0	0	1	0	0	0	982	1074	38	1	1326	1	ARPP21	3	35770832	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09		35770832	162251598	7	43521										
ZXDC	0	genome.wustl.edu	37	chr3	126160731	126160731	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	caactgttctggcttgcatgGaaatggggaggactcatttt	12	7	2	0			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	3	126160731	126160731	G	C	SNP	ZXDC	ENST00000389709	human	ensembl	69_37n	-1	known	missense	c.2271	p.F757L	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476	23	0	0	15	18	54.55	-	-	-	C	126160731	G	C	126160731	3	2	467	1	0	0	0	0	1	0	0	0	18343	1165	41	2	317	2	ZXDC	3	126160731	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	90389899	126160731	71861699	8	43522										
PLCH1	0	genome.wustl.edu	37	chr3	155201158	155201158	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	cttaagttgtttcctattcaGatttgtactacacagaagca	6	8	1	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	3	155201158	155201158	G	T	SNP	PLCH1	ENST00000447496	human	ensembl	69_37n	-1	known	silent	c.3006	p.I1002	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	75	0	0	69	16	18.82	-	-	-	T	155201158	G	T	155201158	2	4	467	1	0	0	0	0	0	0	0	1	12111	932	33	2		2	PLCH1	3	155201158	Silent	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	29040427	155201158	42821272	9	43523										
SEPP1	0	genome.wustl.edu	37	chr5	42808360	42808361	+	Frame_Shift_Ins	INS	-	-	TACA													0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	gatctcttatgctccaggctINSgggggttgcttacataagga							TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	5	42808360	42808361	-	TACA	INS	SEPP1	ENST00000506577	human	ensembl	69_37n	-1	known	frame_shift_ins	c.96_95	p.A33fs	0.491:0.988	pfam_Selenoprotein-P_N	pfam_Selenoprotein-P_N,pfam_SelP_C	-	pseudogene	SEPP1	HGNC	ENSG00000250722	71	0	0	23	3	11.54	-	-	-	TACA	42808361	-	TACA	42808360	7	5	467	1	0	1	1	0	0	0	0	0	14145	1567	55	0	1065	0	SEPP1	5	42808360	Frame_Shift_Ins	INS	-	TCGA-B6-A1KC-01B-11D-A159-09		42808360	138106900	10	43524										
EIF4E1B	0	genome.wustl.edu	37	chr5	176070219	176070220	+	In_Frame_Ins	INS	-	-	CCG													0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ctgagagggaaggcccggacINSggggggccccatggaagtca							TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	5	176070219	176070220	-	CCG	INS	EIF4E1B	ENST00000318682	human	ensembl	69_37n	1	known	in_frame_ins	c.152_153	p.52in_frame_insR	0.000:0.000	superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E1B	HGNC	ENSG00000175766	21	0	0	6	3	33.33	-	-	-	CCG	176070220	-	CCG	176070219	7	5	467	1	0	1	1	0	0	0	0	0	5066	536	19	0	158	0	EIF4E1B	5	176070219	In_Frame_Ins	INS	-	TCGA-B6-A1KC-01B-11D-A159-09	133261859	176070219	4845041	11	43525										
KIAA2026	0	genome.wustl.edu	37	chr9	5921685	5921685	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	taatctacttgttgctgtttAgttggagtatgaataatatt	8	3	1	1			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	9	5921685	5921685	A	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	silent	c.4311	p.T1437	0.979	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	303	0	0	136	35	20.23	-	-	-	G	5921685	A	G	5921685	2	3	467	1	0	0	0	0	0	0	0	1	8322	407	15	5		5	KIAA2026	9	5921685	Silent	SNP	A	TCGA-B6-A1KC-01B-11D-A159-09		5921685	135291746	12	43526										
FAM22G	0	genome.wustl.edu	37	chr9	99698810	99698810	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ccccgccgaggcttgaacctCgaggaccccctgcccctgag	11	19	0	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	9	99698810	99698810	C	A	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	silent	c.946	p.R316	0.009	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	16	0	0	9	10	52.63	-	-	-	A	99698810	C	A	99698810	2	1	467	1	0	0	0	0	0	0	0	1	5588	876	31	3		3	FAM22G	9	99698810	Silent	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	93777125	99698810	41514621	13	43527										
SEC16A	0	genome.wustl.edu	37	chr9	139369234	139369234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	gaagagcacttcctgccttaCgatccttttgactttctgga	8	11	1	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	9	139369234	139369234	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.2834	p.R945H	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	10	0	0	10	5	33.33	-	-	-	T	139369234	C	T	139369234	3	4	467	1	0	0	0	0	1	0	0	0	14074	536	19	1	4359	1	SEC16A	9	139369234	Missense_Mutation	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	39670424	139369234	1844197	14	43528										
MUC5B	0	genome.wustl.edu	37	chr11	1266537	1266537	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	cagcactcgactccagccctGtccagccctcaccctagcag	7	20	1	0			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	11	1266537	1266537	G	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.8436	p.L2812	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	11	0	0	3	4	57.14	-	-	-	T	1266537	G	T	1266537	2	4	467	1	0	0	0	0	0	0	0	1	10051	1364	48	4		4	MUC5B	11	1266537	Silent	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09		1266537	133739979	15	43529										
FLI1	0	genome.wustl.edu	37	chr11	128680620	128680620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	aatttgacttccacggcattGcccaggctctgcagccacat	8	14	1	1			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	11	128680620	128680620	G	A	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	missense	c.1096	p.A366T	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	69	0	0	5	39	84.78	-	-	-	A	128680620	G	A	128680620	3	1	467	1	0	0	0	0	1	0	0	0	5970	1319	46	4	1130	4	FLI1	11	128680620	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	127414083	128680620	6325896	16	43530										
ANKRD13A	0	genome.wustl.edu	37	chr12	110456273	110456273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ctggataagagggaggcgtaGttttatatttaagggagaag	15	2	0	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	12	110456273	110456273	G	T	SNP	ANKRD13A	ENST00000261739	human	ensembl	69_37n	1	known	missense	c.524	p.S175I	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13A	HGNC	ENSG00000076513	118	0	0	43	58	57.43	-	-	-	T	110456273	G	T	110456273	3	4	467	1	0	0	0	0	1	0	0	0	641	1029	36	4	542	4	ANKRD13A	12	110456273	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09		110456273	23395622	17	43531										
CEP152	0	genome.wustl.edu	37	chr15	49031351	49031351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	agctgccctcctcttgggagCttgttcgcacagagttctgg	12	12	2	1			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	15	49031351	49031351	C	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.4228	p.A1410T	0.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	170	0	0	26	43	62.32	-	-	-	T	49031351	C	T	49031351	3	4	467	1	0	0	0	0	1	0	0	0	3277	797	28	4	908	4	CEP152	15	49031351	Missense_Mutation	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09		49031351	53500041	18	43532										
HS3ST2	0	genome.wustl.edu	37	chr16	22926374	22926374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	tcaacatgtcccgagacaccAagctgatcgtggttgtgcgg	12	11	1	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	16	22926374	22926374	A	G	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	missense	c.595	p.K199E	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	107	0	0	26	5	16.13	-	-	-	G	22926374	A	G	22926374	3	3	467	1	0	0	0	0	1	0	0	0	7415	131	5	5	601	5	HS3ST2	16	22926374	Missense_Mutation	SNP	A	TCGA-B6-A1KC-01B-11D-A159-09		22926374	67428379	19	43533										
RALBP1	0	genome.wustl.edu	37	chr18	9525780	9525780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ataaaggatttgtctaaagaAgaaagattatgggaagtaca	10	2	1	3			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	18	9525780	9525780	A	C	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	missense	c.1278	p.E426D	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	173	0	0	96	46	32.17	-	-	-	C	9525780	A	C	9525780	3	2	467	1	0	0	0	0	1	0	0	0	13095	69	3	5	1296	5	RALBP1	18	9525780	Missense_Mutation	SNP	A	TCGA-B6-A1KC-01B-11D-A159-09		9525780	68551468	20	43534										
DOPEY2	0	genome.wustl.edu	37	chr21	37665770	37665770	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ctgcctgctgatagcccaggAactccattcttggactttcc	8	14	1	1			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	21	37665770	37665770	A	T	SNP	DOPEY2	ENST00000414001	human	ensembl	69_37n	1	known	missense	c.44	p.E15V	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOPEY2	HGNC	ENSG00000142197	85	0	0	13	16	53.33	-	-	-	T	37665770	A	T	37665770	3	4	467	1	0	0	0	0	1	0	0	0	4743	233	9	5	6940	5	DOPEY2	21	37665770	Missense_Mutation	SNP	A	TCGA-B6-A1KC-01B-11D-A159-09		37665770	10464125	21	43535										
FAM70A	0	genome.wustl.edu	37	chrX	119418990	119418990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	ctcaacacttacttgccacaGttgtagaggtcacagcagaa	8	11	2	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	X	119418990	119418990	G	T	SNP	FAM70A	ENST00000309720	human	ensembl	69_37n	-1	known	missense	c.576	p.N192K	1.000	NULL	NULL	-	no_errors	FAM70A	HGNC	ENSG00000125355	86	0	0	30	52	63.41	-	-	-	T	119418990	G	T	119418990	3	4	467	1	0	0	0	0	1	0	0	0	5650	1020	36	4	489	4	FAM70A	23	119418990	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09		119418990	35851570	22	43536										
MAGEC2	0	genome.wustl.edu	37	chrX	141291556	141291556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	taagatttggtatcacaccaGagggcacctcctcctcctca	7	14	2	2			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	X	141291556	141291556	G	C	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.218	p.S73C	0.003	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	155	0	0	53	19	26.39	-	-	-	C	141291556	G	C	141291556	3	2	467	1	0	0	0	0	1	0	0	0	9252	942	33	2	907	2	MAGEC2	23	141291556	Missense_Mutation	SNP	G	TCGA-B6-A1KC-01B-11D-A159-09	21872566	141291556	13979004	23	43537										
F8	0	genome.wustl.edu	37	chrX	154088864	154088864	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.929986159128921	0.948660714285714	3.79464285714286	0	1	1	0	tctggaagtccacttgcagcCactcttttggattattcacc	7	12	3	0			TCGA-B6-A1KC-01B-11D-A159-09	TCGA-B6-A1KC-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc3e822f-150d-47a7-a346-10919b42aa8c	1fd8eddb-6c79-4a27-917a-f710225a589d	X	154088864	154088864	C	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.6743	p.W2248L	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	231	0	0	71	16	18.39	-	-	-	A	154088864	C	A	154088864	3	1	467	1	0	0	0	0	1	0	0	0	5387	595	21	4	320	4	F8	23	154088864	Missense_Mutation	SNP	C	TCGA-B6-A1KC-01B-11D-A159-09	12797308	154088864	1181696	24	43538										
ARHGEF2	0	genome.wustl.edu	37	chr1	155921720	155921720	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gaggacctaccctctggctaGagtctgagtcagctctgcag	12	12	4	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	155921720	155921720	G	C	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2165	p.S722C	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	38	0	0	255	109	29.95	-	-	-	C	155921720	G	C	155921720	3	2	468	1	0	0	0	0	1	0	0	0	905	942	33	2	822	2	ARHGEF2	1	155921720	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		155921720	93328901	1	43539										
IQGAP3	0	genome.wustl.edu	37	chr1	156507048	156507048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ggaggttgcgtagggcgatgTccagtcgtctctggacctcg	16	10	1	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	156507048	156507048	T	C	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.3347	p.D1116G	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	133	0	0	348	42	10.74	-	-	-	C	156507048	T	C	156507048	3	2	468	1	0	0	0	0	1	0	0	0	7870	1667	58	5	1596	5	IQGAP3	1	156507048	Missense_Mutation	SNP	T	TCGA-B6-A1KF-01A-11D-A13L-09	585328	156507048	92743573	2	43540										
MYBPH	0	genome.wustl.edu	37	chr1	203144796	203144796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tgatactgccacttctccggGaggctctgctgtgggcacct	12	13	2	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	203144796	203144796	G	A	SNP	MYBPH	ENST00000255416	human	ensembl	69_37n	-1	known	missense	c.88	p.P30S	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPH	HGNC	ENSG00000133055	36	0	0	127	91	41.74	-	-	-	A	203144796	G	A	203144796	3	1	468	1	0	0	0	0	1	0	0	0	10086	1174	41	2	1385	2	MYBPH	1	203144796	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	46637748	203144796	46105825	3	43541										
NFASC	0	genome.wustl.edu	37	chr1	204942492	204942492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	agcagggctgtgtaccagtgCaacacctccaacgagcatgg	12	12	0	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	204942492	204942492	C	T	SNP	NFASC	ENST00000367173	human	ensembl	69_37n	1	novel	missense	c.1133	p.A378V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NFASC	HGNC	ENSG00000163531	116	0	0	472	126	21.07	-	-	-	T	204942492	C	T	204942492	3	4	468	1	0	0	0	0	1	0	0	0	10431	718	25	4	1317	4	NFASC	1	204942492	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	1797696	204942492	44308129	4	43542										
RYR2	0	genome.wustl.edu	37	chr1	237777445	237777445	+	Missense_Mutation	SNP	G	G	T													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ctcttgggaaccaccgggtgGcccatgccctgtgcagccat							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	237777445	237777445	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5011	p.A1671S	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	66	0	0	37	187	83.48	-	-	-	T	237777445	G	T	237777445	3	4	468	1	0	0	0	0	1	0	0	0	13855	1203	42	4	5163	4	RYR2	1	237777445	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	32834953	237777445	11473176	5	43543	352	2								
RYR2	0	genome.wustl.edu	37	chr1	237777446	237777446	+	Missense_Mutation	SNP	C	C	T													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tcttgggaaccaccgggtggCccatgccctgtgcagccatg							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	1	237777446	237777446	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5012	p.A1671V	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	65	0	0	39	187	82.74	-	-	-	T	237777446	C	T	237777446	3	4	468	1	0	0	0	0	1	0	0	0	13855	739	26	4	5164	4	RYR2	1	237777446	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	1	237777446	11473175	6	43544	352	2								
BAZ2B	0	genome.wustl.edu	37	chr2	160335202	160335202	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gtgtagtagaggaggctgctGaggatggtaaccgttctcca	15	7	1	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	2	160335202	160335202	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.29	p.S10L	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	95	0	0	102	27	20.93	-	-	-	A	160335202	G	A	160335202	3	1	468	1	0	0	0	0	1	0	0	0	1336	1294	45	2	6617	2	BAZ2B	2	160335202	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		160335202	82864171	7	43545										
ABI3BP	0	genome.wustl.edu	37	chr3	100515255	100515255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	atgaaataattaatttaccaGgttcgctctgagagacctca	7	8	2	3			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	3	100515255	100515255	G	A	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.1805	p.P602L	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	62	0	0	65	43	39.81	-	-	-	A	100515255	G	A	100515255	3	1	468	1	0	0	0	0	1	0	0	0	91	1000	35	4	1482	4	ABI3BP	3	100515255	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		100515255	97507175	8	43546										
XRN1	0	genome.wustl.edu	37	chr3	142031572	142031572	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ccccatggcattgagccaaaGagatgagacgacgaaggcat	12	10	0	3			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	3	142031572	142031572	G	T	SNP	XRN1	ENST00000498077	human	ensembl	69_37n	-1	known	missense	c.3046	p.L1016I	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	XRN1	HGNC	ENSG00000114127	32	0	0	42	35	45.45	-	-	-	T	142031572	G	T	142031572	3	4	468	1	0	0	0	0	1	0	0	0	17556	929	33	2	442	2	XRN1	3	142031572	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	41516317	142031572	55990858	9	43547										
KIAA0922	0	genome.wustl.edu	37	chr4	154478218	154478218	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tattaatacctcttcgtatgGagtcctttcctatcatgtga	6	9	2	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	4	154478218	154478218	G	C	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.533	p.G178A	1.000	pfam_DUF3651_TMEM131	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	130	0	0	53	57	51.82	-	-	-	C	154478218	G	C	154478218	3	2	468	1	0	0	0	0	1	0	0	0	8253	1174	41	2	555	2	KIAA0922	4	154478218	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		154478218	36676058	10	43548										
LIFR	0	genome.wustl.edu	37	chr5	38481792	38481792	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tttaggaggaatcaaaaattGtcgggaattaatggagcatg	12	3	1	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	5	38481792	38481792	G	T	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	missense	c.3199	p.Q1067K	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	86	0	0	144	31	17.71	-	-	-	T	38481792	G	T	38481792	3	4	468	1	0	0	0	0	1	0	0	0	8835	1386	48	4	98	4	LIFR	5	38481792	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		38481792	142433468	11	43549										
ARRDC3	0	genome.wustl.edu	37	chr5	90670942	90670943	+	Frame_Shift_Ins	INS	-	-	CA													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	taaatggctgcctttggcacINScaccattcgggaagagcagt							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	5	90670942	90670943	-	CA	INS	ARRDC3	ENST00000265138	human	ensembl	69_37n	-1	known	frame_shift_ins	c.667_666	p.V222fs	1.000:1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369	29	0	0	15	46	75.41	-	-	-	CA	90670943	-	CA	90670942	7	5	468	1	0	1	1	0	0	0	0	0	988	507	18	0	593	0	ARRDC3	5	90670942	Frame_Shift_Ins	INS	-	TCGA-B6-A1KF-01A-11D-A13L-09	52189150	90670942	90244318	12	43550										
HIP1	0	genome.wustl.edu	37	chr7	75197549	75197549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ccggtggccttgcagggtgtCagctgggaggcctggaagaa	18	9	1	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	7	75197549	75197549	C	T	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.757	p.D253N	1.000	pfam_ANTH,superfamily_ARM-type_fold	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	62	0	0	120	44	26.67	-	-	-	T	75197549	C	T	75197549	3	4	468	1	0	0	0	0	1	0	0	0	7165	826	29	2	2448	2	HIP1	7	75197549	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09		75197549	83941114	13	43551										
GPC2	0	genome.wustl.edu	37	chr7	99769764	99769764	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tacatcaaaccctccgagatCttcaccccaatggactcggc	6	16	3	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	7	99769764	99769764	C	T	SNP	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	silent	c.969	p.K323	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	34	0	0	66	32	32.65	-	-	-	T	99769764	C	T	99769764	2	4	468	1	0	0	0	0	0	0	0	1	6648	912	32	2		2	GPC2	7	99769764	Silent	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	24572215	99769764	59368899	14	43552										
SPAM1	0	genome.wustl.edu	37	chr7	123599783	123599783	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gaagacctggagcaattttcTgaaaaattttattgcagctg	9	6	1	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	7	123599783	123599783	T	A	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	silent	c.1290	p.S430	0.002	pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	100	0	0	145	55	27.36	-	-	-	A	123599783	T	A	123599783	2	1	468	1	0	0	0	0	0	0	0	1	15077	1567	55	5		5	SPAM1	7	123599783	Silent	SNP	T	TCGA-B6-A1KF-01A-11D-A13L-09	23830019	123599783	35538880	15	43553										
OR2A42	0	genome.wustl.edu	37	chr7	143929735	143929735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gcgggtgtaggcgatgtcgaCgacagccaggtgtgagagga	19	7	0	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	7	143929735	143929735	C	T	SNP	OR2A42	ENST00000391496	human	ensembl	69_37n	-1	known	missense	c.202	p.V68I	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A42	HGNC	ENSG00000212807	12	0	0	25	18	41.86	-	-	-	T	143929735	C	T	143929735	3	4	468	1	0	0	0	0	1	0	0	0	11053	536	19	1		1	OR2A42	7	143929735	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	20329952	143929735	15208928	16	43554										
ARHGEF5	0	genome.wustl.edu	37	chr7	144062632	144062632	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	taaggatgaagcaggggtctCagaacaccctgaggcccctg	13	11	1	3			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	7	144062632	144062632	C	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	nonsense	c.2870	p.S957*	0.005	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	8	0	0	1	2	66.67	-	-	-	G	144062632	C	G	144062632	4	3	468	1	0	0	0	0	0	1	0	0	911	838	29	2	2872	2	ARHGEF5	7	144062632	Nonsense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	132897	144062632	15076031	17	43555										
IKBKB	0	genome.wustl.edu	37	chr8	42174288	42174288	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	cctaccctgtgacagaggatGagagtctgcagagcttgaag	13	9	1	5			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	8	42174288	42174288	G	T	SNP	IKBKB	ENST00000520810	human	ensembl	69_37n	1	known	nonsense	c.991	p.E331*	1.000	superfamily_Kinase-like_dom,pfscan_Ubiquitin_supergroup	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	64	0	0	121	32	20.92	-	-	-	T	42174288	G	T	42174288	4	4	468	1	0	0	0	0	0	1	0	0	7665	1291	45	2	1029	2	IKBKB	8	42174288	Nonsense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		42174288	104189734	18	43556										
WWP1	0	genome.wustl.edu	37	chr8	87460602	87460602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tatatatttatttcacccagAgataacaacattgaagaatg	5	6	1	3			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	8	87460602	87460602	A	G	SNP	WWP1	ENST00000520453	human	ensembl	69_37n	1	novel	missense	c.634	p.R212G	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_start_codon:pseudogene:no_stop_codon	WWP1	HGNC	ENSG00000123124	112	0	0	254	37	12.63	-	-	-	G	87460602	A	G	87460602	3	3	468	1	0	0	0	0	1	0	0	0	17512	318	11	5	2203	5	WWP1	8	87460602	Missense_Mutation	SNP	A	TCGA-B6-A1KF-01A-11D-A13L-09	45286314	87460602	58903420	19	43557										
RANBP6	0	genome.wustl.edu	37	chr9	6012355	6012355	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	atcaagttgtgatacacattCcaaccataaatcttcagaag	5	9	3	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	9	6012355	6012355	C	G	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.3253	p.E1085Q	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	29	0	0	59	35	36.84	-	-	-	G	6012355	C	G	6012355	3	3	468	1	0	0	0	0	1	0	0	0	13114	864	30	2	68	2	RANBP6	9	6012355	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09		6012355	135201076	20	43558										
PGM5	0	genome.wustl.edu	37	chr9	71006498	71006498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gtgtgatgagctgggggcccCagccaattctgcaataaact	12	10	1	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	9	71006498	71006498	C	T	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.746	p.P249L	1.000	pfam_A-D-PHexomutase_a/b/a-II	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	82	0	0	42	56	57.14	-	-	-	T	71006498	C	T	71006498	3	4	468	1	0	0	0	0	1	0	0	0	11875	594	21	4	764	4	PGM5	9	71006498	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	64994143	71006498	70206933	21	43559										
DNM1	0	genome.wustl.edu	37	chr9	131010934	131010934	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	cacagctggaacggcaagtgGagaccatccggaatcttgtg	13	10	1	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	9	131010934	131010934	G	C	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.1978	p.E660Q	1.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	54	0	0	92	28	23.33	-	-	-	C	131010934	G	C	131010934	3	2	468	1	0	0	0	0	1	0	0	0	4705	1175	41	2	2047	2	DNM1	9	131010934	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	60004436	131010934	10202497	22	43560										
EPC1	0	genome.wustl.edu	37	chr10	32581994	32581995	+	Frame_Shift_Del	DEL	TT	TT	-													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ctggaaccatctcgcttctcTtgttttactgatggaataag							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	10	32581994	32581995	TT	-	DEL	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	frame_shift_del	c.588_587	p.Q196fs	1.000:1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	71	0	0	208	44	17.19	-	-	-	-	32581995	TT	-	32581994	7	5	468	1	0	1	0	1	0	0	0	0	5197	1606	56	0	1970	0	EPC1	10	32581994	Frame_Shift_Del	DEL	TT	TCGA-B6-A1KF-01A-11D-A13L-09		32581994	102952753	23	43561										
RNF169	0	genome.wustl.edu	37	chr11	74547205	74547207	+	In_Frame_Del	DEL	AAG	AAG	-													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gaacaggacagtgataataaAagtagcactgagatcccact							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	11	74547205	74547207	AAG	-	DEL	RNF169	ENST00000299563	human	ensembl	69_37n	1	known	in_frame_del	c.1557_1559	p.KS519in_frame_delN	0.182:0.212:0.209	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	25	0	0	21	18	45	-	-	-	-	74547207	AAG	-	74547205	7	5	468	1	0	1	0	1	0	0	0	0	13546	11	1	0	1579	0	RNF169	11	74547205	In_Frame_Del	DEL	AAG	TCGA-B6-A1KF-01A-11D-A13L-09		74547205	60459311	24	43562										
KRT77	0	genome.wustl.edu	37	chr12	53086216	53086216	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	cagacccacctgctctcctcGccctccagcagctggcggta	9	19	1	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	12	53086216	53086216	G	A	SNP	KRT77	ENST00000341809	human	ensembl	69_37n	-1	known	silent	c.1416	p.G472	0.841	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182	26	0	0	21	10	32.26	-	-	-	A	53086216	G	A	53086216	2	1	468	1	0	0	0	0	0	0	0	1	8543	1074	38	1		1	KRT77	12	53086216	Silent	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		53086216	80765679	25	43563										
METTL3	0	genome.wustl.edu	37	chr14	21967278	21967278	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tggtttatgactggtggaacGaacctaggaaataaaaacta	10	5	0	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	14	21967278	21967278	G	C	SNP	METTL3	ENST00000298717	human	ensembl	69_37n	-1	known	missense	c.1522	p.R508G	1.000	pfam_MT-A70-like,pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL3	HGNC	ENSG00000165819	106	0	0	24	90	78.95	-	-	-	C	21967278	G	C	21967278	3	2	468	1	0	0	0	0	1	0	0	0	9572	1058	37	3	228	3	METTL3	14	21967278	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		21967278	85382262	26	43564										
GLCE	0	genome.wustl.edu	37	chr15	69560895	69560895	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gttgattgcaaaaggtaaggGattcctcgacaacattacca	9	8	0	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	15	69560895	69560895	G	C	SNP	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	missense	c.1166	p.G389A	1.000	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	55	0	0	51	32	38.55	-	-	-	C	69560895	G	C	69560895	3	2	468	1	0	0	0	0	1	0	0	0	6484	1174	41	2	1176	2	GLCE	15	69560895	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		69560895	32970497	27	43565										
CREBBP	0	genome.wustl.edu	37	chr16	3781889	3781889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tgctgcttttgttcttgttgGttttcttgttgttcttcttc	8	7	4	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	16	3781889	3781889	G	T	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.4778	p.T1593N	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	490	1	0.2	568	416	42.11	-	-	-	T	3781889	G	T	3781889	3	4	468	1	0	0	0	0	1	0	0	0	3891	1261	44	4	2562	4	CREBBP	16	3781889	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		3781889	86572864	28	43566										
C16orf93	0	genome.wustl.edu	37	chr16	30768802	30768802	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ggaaaatgttgggggtcactTggtcttgctcttgcctttac	12	8	3	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	16	30768802	30768802	T	C	SNP	C16orf93	ENST00000543610	human	ensembl	69_37n	-1	known	missense	c.991	p.K331E	1.000	NULL	NULL	-	no_errors	C16orf93	HGNC	ENSG00000196118	46	0	0	166	43	20.57	-	-	-	C	30768802	T	C	30768802	3	2	468	1	0	0	0	0	1	0	0	0	1859	1821	63	5	8	5	C16orf93	16	30768802	Missense_Mutation	SNP	T	TCGA-B6-A1KF-01A-11D-A13L-09	26986913	30768802	59585951	29	43567										
TP53	0	genome.wustl.edu	37	chr17	7579311	7579311	+	Splice_Site	DEL	C	C	-													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	cagcccctcagggcaactgaCcgtgcaagtcacagacttgg							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	17	7579311	7579311	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site_del	c.375+1	e3+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	16	0	0	2	26	89.66	-	-	-	-	7579311	C	-	7579311	8	5	468	1	0	1	0	1	0	0	1	0	16477	521	18	0	926	0	TP53	17	7579311	Splice_Site	DEL	C	TCGA-B6-A1KF-01A-11D-A13L-09		7579311	73615899	30	43568										
LGALS9B	0	genome.wustl.edu	37	chr17	20356907	20356907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tgggagctgggttggcaggcCgcacgctgggaggctggagg	22	8	0	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	17	20356907	20356907	C	T	SNP	LGALS9B	ENST00000423676	human	ensembl	69_37n	-1	known	missense	c.554	p.R185Q	0.000	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS9B	HGNC	ENSG00000170298	10	0	0	14	10	41.67	-	-	-	T	20356907	C	T	20356907	3	4	468	1	0	0	0	0	1	0	0	0	8804	652	23	1	537	1	LGALS9B	17	20356907	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	12777596	20356907	60838303	31	43569										
MYO18A	0	genome.wustl.edu	37	chr17	27434125	27434125	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tcatccaccacgatgtagttAcgcccgtgtttcttggtcag	9	12	3	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	17	27434125	27434125	A	C	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	silent	c.3414	p.R1138	0.995	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	122	1	0.81	330	55	14.29	-	-	-	C	27434125	A	C	27434125	2	2	468	1	0	0	0	0	0	0	0	1	10137	378	14	5		5	MYO18A	17	27434125	Silent	SNP	A	TCGA-B6-A1KF-01A-11D-A13L-09	7077218	27434125	53761085	32	43570										
USP32	0	genome.wustl.edu	37	chr17	58260771	58260771	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tgacaattttctgtgattttAtccaccgaccatttacaaat	4	9	1	2			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	17	58260771	58260771	A	G	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.3878	p.I1293T	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	41	0	0	51	37	42.05	-	-	-	G	58260771	A	G	58260771	3	3	468	1	0	0	0	0	1	0	0	0	17160	449	16	5	952	5	USP32	17	58260771	Missense_Mutation	SNP	A	TCGA-B6-A1KF-01A-11D-A13L-09	30826646	58260771	22934439	33	43571										
FBN3	0	genome.wustl.edu	37	chr19	8155008	8155008	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ccctcctggggacacagttcGcaggggtctccccagccctc	11	18	1	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	19	8155008	8155008	G	A	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.6159	p.C2053	0.658	pfam_TB_dom,superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	41	0	0	27	11	28.95	-	-	-	A	8155008	G	A	8155008	2	1	468	1	0	0	0	0	0	0	0	1	5750	1079	38	1		1	FBN3	19	8155008	Silent	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09		8155008	50973975	34	43572										
C19orf66	0	genome.wustl.edu	37	chr19	10200684	10200684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	cagtttgcctgctcctcctgCgaccacgtctggtggcgccg	12	16	1	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	19	10200684	10200684	C	T	SNP	C19orf66	ENST00000593131	human	ensembl	69_37n	1	putative	missense	c.119	p.A40V	0.928	NULL	NULL	-	no_start_codon	C19orf66	HGNC	ENSG00000130813	71	0	0	33	25	43.1	-	-	-	T	10200684	C	T	10200684	3	4	468	1	0	0	0	0	1	0	0	0	1964	776	27	1	363	1	C19orf66	19	10200684	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	2045676	10200684	48928299	35	43573										
TECR	0	genome.wustl.edu	37	chr19	14674030	14674030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tcccccaggtggagccccacGccaccattgcggagatcaag	11	16	1	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	19	14674030	14674030	G	A	SNP	TECR	ENST00000436007	human	ensembl	69_37n	1	known	missense	c.124	p.A42T	1.000	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECR	HGNC	ENSG00000099797	25	0	0	7	54	88.52	-	-	-	A	14674030	G	A	14674030	3	1	468	1	0	0	0	0	1	0	0	0	15840	1087	38	1	89	1	TECR	19	14674030	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	4473346	14674030	44454953	36	43574										
ZNF749	0	genome.wustl.edu	37	chr19	57955449	57955449	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	aaggcctttcttacacaggcTcatctggttggtcaccagaa	9	11	4	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	19	57955449	57955449	T	G	SNP	ZNF749	ENST00000334181	human	ensembl	69_37n	1	known	silent	c.933	p.A311	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	81	0	0	21	8	27.59	-	-	-	G	57955449	T	G	57955449	2	3	468	1	0	0	0	0	0	0	0	1	18225	1538	54	5		5	ZNF749	19	57955449	Silent	SNP	T	TCGA-B6-A1KF-01A-11D-A13L-09	43281419	57955449	1173534	37	43575										
C20orf26	0	genome.wustl.edu	37	chr20	20051511	20051511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tctgcagagaaaaggccaacCttgctgttaccctctgcaat	8	12	2	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	20	20051511	20051511	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.157	p.L53F	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	47	0	0	68	20	22.73	-	-	-	T	20051511	C	T	20051511	3	4	468	1	0	0	0	0	1	0	0	0	2126	681	24	4	163	4	C20orf26	20	20051511	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09		20051511	42974009	38	43576										
SLC12A5	0	genome.wustl.edu	37	chr20	44664069	44664069	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	atggacaccagccctatggtGtcctccttgctcagtggcct	10	14	1	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	20	44664069	44664069	G	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	silent	c.243	p.V81	0.999	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	19	0	0	37	31	45.59	-	-	-	T	44664069	G	T	44664069	2	4	468	1	0	0	0	0	0	0	0	1	14475	1364	48	4		4	SLC12A5	20	44664069	Silent	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	24612558	44664069	18361451	39	43577										
C20orf43	0	genome.wustl.edu	37	chr20	55092227	55092227	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ccagccttgattctagagagAagaaaaccaacttggctccc	8	12	1	4			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	20	55092227	55092227	A	G	SNP	C20orf43	ENST00000357348	human	ensembl	69_37n	1	known	missense	c.802	p.K268E	1.000	NULL	NULL	-	no_errors	C20orf43	HGNC	ENSG00000022277	54	0	0	72	30	29.41	-	-	-	G	55092227	A	G	55092227	3	3	468	1	0	0	0	0	1	0	0	0	2132	247	9	5	742	5	C20orf43	20	55092227	Missense_Mutation	SNP	A	TCGA-B6-A1KF-01A-11D-A13L-09	10428158	55092227	7933293	40	43578										
PCK1	0	genome.wustl.edu	37	chr20	56137929	56137929	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	gtttgtcaaatgcctccattCtgtggggtgccctctgcctt	10	12	3	0			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	20	56137929	56137929	C	T	SNP	PCK1	ENST00000319441	human	ensembl	69_37n	1	known	missense	c.584	p.S195F	0.999	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253	23	0	0	38	22	36.67	-	-	-	T	56137929	C	T	56137929	3	4	468	1	0	0	0	0	1	0	0	0	11654	913	32	2	594	2	PCK1	20	56137929	Missense_Mutation	SNP	C	TCGA-B6-A1KF-01A-11D-A13L-09	1045702	56137929	6887591	41	43579										
CNKSR2	0	genome.wustl.edu	37	chrX	21450738	21450739	+	Frame_Shift_Ins	INS	-	-	T													0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ttataattcagaattatggcINSttggaaacagaaaatctaaa							TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	X	21450738	21450739	-	T	INS	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	frame_shift_ins	c.237_238	p.L79fs	1.000:1.000	superfamily_SAM/pointed	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	52	0	0	44	6	12	-	-	-	T	21450739	-	T	21450738	7	5	468	1	0	1	1	0	0	0	0	0	3637	784	28	0	247	0	CNKSR2	23	21450738	Frame_Shift_Ins	INS	-	TCGA-B6-A1KF-01A-11D-A13L-09		21450738	133819822	42	43580										
CACNA1F	0	genome.wustl.edu	37	chrX	49066793	49066793	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	tcttcagggatgtccggaccAgggcaaagagtgtggcgttg	16	8	2	1			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	X	49066793	49066793	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.4589	p.L1530Q	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	14	0	0	60	16	21.05	-	-	-	T	49066793	A	T	49066793	3	4	468	1	0	0	0	0	1	0	0	0	2568	188	7	5	1384	5	CACNA1F	23	49066793	Missense_Mutation	SNP	A	TCGA-B6-A1KF-01A-11D-A13L-09	27616055	49066793	106203767	43	43581										
UTP14A	0	genome.wustl.edu	37	chrX	129058938	129058938	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.162790697674419	7	0.104823740455966	2.30894648829431	2.16758241758242	2.37079326923077	0.334841628959276	0.930327025915261	0	ccctgttgctacagagaccaGagagagtacagacgctggaa	12	10	0	4			TCGA-B6-A1KF-01A-11D-A13L-09	TCGA-B6-A1KF-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbfbcb76-0524-4772-b918-1e8599a09d7f	74b38ebd-6e55-4bfa-93c5-29185138cb6e	X	129058938	129058938	G	A	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	missense	c.1516	p.E506K	0.324	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	44	0	0	53	28	34.57	-	-	-	A	129058938	G	A	129058938	3	1	468	1	0	0	0	0	1	0	0	0	17192	943	33	2	1562	2	UTP14A	23	129058938	Missense_Mutation	SNP	G	TCGA-B6-A1KF-01A-11D-A13L-09	79992145	129058938	26211622	44	43582										
EPB41	0	genome.wustl.edu	37	chr1	29344886	29344886	+	Frame_Shift_Del	DEL	T	T	-													0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	ggcgtggattatgttagtgaTtttaaactggccccgaatca							TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	29344886	29344886	T	-	DEL	EPB41	ENST00000343067	human	ensembl	69_37n	1	known	frame_shift_del	c.1056	p.F353fs	0.951	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	34	0	0	96	36	27.07	-	-	-	-	29344886	T	-	29344886	7	5	469	1	0	1	0	1	0	0	0	0	5188	1490	52	0	1078	0	EPB41	1	29344886	Frame_Shift_Del	DEL	T	TCGA-B6-A1KI-01A-11D-A14K-09		29344886	219905735	1	43583										
ANKRD35	0	genome.wustl.edu	37	chr1	145556634	145556634	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	gcctccaaaggcctgacagaAtgtctgactatcctgcttgc	9	13	1	3			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	145556634	145556634	A	G	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	1	known	silent	c.204	p.E68	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	41	0	0	86	12	12.24	-	-	-	G	145556634	A	G	145556634	2	3	469	1	0	0	0	0	0	0	0	1	663	98	4	5		5	ANKRD35	1	145556634	Silent	SNP	A	TCGA-B6-A1KI-01A-11D-A14K-09	116211748	145556634	103693987	2	43584										
ABHD1	0	genome.wustl.edu	37	chr2	27351965	27351965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	ggatacatacgtcttgcaccTagttaaccaagctctgaggg	10	10	2	1			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	2	27351965	27351965	T	C	SNP	ABHD1	ENST00000316470	human	ensembl	69_37n	1	known	missense	c.428	p.L143P	0.802	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD1	HGNC	ENSG00000143994	38	0	0	45	13	22.41	-	-	-	C	27351965	T	C	27351965	3	2	469	1	0	0	0	0	1	0	0	0	73	1522	53	5	438	5	ABHD1	2	27351965	Missense_Mutation	SNP	T	TCGA-B6-A1KI-01A-11D-A14K-09		27351965	215847408	3	43585										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	3	178936095	178936095	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546P	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	31	0	0	75	36	32.43	-	-	-	C	178936095	A	C	178936095	3	2	469	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-B6-A1KI-01A-11D-A14K-09		178936095	19086335	4	43586										
MAP3K1	0	genome.wustl.edu	37	chr5	56176938	56176938	+	Frame_Shift_Del	DEL	T	T	-													0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	ggtattggtggtgttgattaTgtcttaaattgtattcttgg							TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	56176938	56176938	T	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2208	p.Y736fs	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	99	0	0	178	81	30.57	-	-	-	-	56176938	T	-	56176938	7	5	469	1	0	1	0	1	0	0	0	0	9314	1471	51	0	2258	0	MAP3K1	5	56176938	Frame_Shift_Del	DEL	T	TCGA-B6-A1KI-01A-11D-A14K-09		56176938	124738322	5	43587										
CATSPER3	0	genome.wustl.edu	37	chr5	134347257	134347257	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	tgcatgtgctgagcctaatgCtggaagacttgccccaggag	13	10	0	2			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	134347257	134347257	C	G	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	missense	c.1141	p.L381V	0.970	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	20	0	0	106	50	31.85	-	-	-	G	134347257	C	G	134347257	3	3	469	1	0	0	0	0	1	0	0	0	2714	796	28	4	1171	4	CATSPER3	5	134347257	Missense_Mutation	SNP	C	TCGA-B6-A1KI-01A-11D-A14K-09	78170319	134347257	46568003	6	43588										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720953	140720953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	gaagaagaaagagaagaaacGttttctcaggtaatctatct	9	5	3	4			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	140720953	140720953	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	silent	c.2415	p.T805	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	42	0	0	82	19	18.81	-	-	-	A	140720953	G	A	140720953	2	1	469	1	0	0	0	0	0	0	0	1	11627	1132	40	1		1	PCDHGA2	5	140720953	Silent	SNP	G	TCGA-B6-A1KI-01A-11D-A14K-09	6373696	140720953	40194307	7	43589										
MAGI2	0	genome.wustl.edu	37	chr7	77789414	77789414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	gaagccctcattctctttgcGgtgaatgaccacatcactgg	9	12	3	2			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	7	77789414	77789414	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.2773	p.R925C	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	39	0	0	96	37	27.82	-	-	-	A	77789414	G	A	77789414	3	1	469	1	0	0	0	0	1	0	0	0	9262	1116	39	1	1622	1	MAGI2	7	77789414	Missense_Mutation	SNP	G	TCGA-B6-A1KI-01A-11D-A14K-09		77789414	81349249	8	43590										
KLF4	0	genome.wustl.edu	37	chr9	110249348	110249348	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	tgccttgagatgggaactctTtgtgtaggttttgccgcagc	13	8	1	1			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	9	110249348	110249348	T	G	SNP	KLF4	ENST00000374672	human	ensembl	69_37n	-1	known	missense	c.1225	p.K409Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826	91	0	0	195	234	54.55	-	-	-	G	110249348	T	G	110249348	3	3	469	1	0	0	0	0	1	0	0	0	8401	1850	64	5	222	5	KLF4	9	110249348	Missense_Mutation	SNP	T	TCGA-B6-A1KI-01A-11D-A14K-09		110249348	30964083	9	43591										
RET	0	genome.wustl.edu	37	chr10	43609956	43609956	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	tgcgacgagctgtgccgcacGgtgatcgcagccgctgtcct	14	14	0	1			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	10	43609956	43609956	G	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	silent	c.1908	p.T636	0.628	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	25	0	0	40	10	20	-	-	-	A	43609956	G	A	43609956	2	1	469	1	0	0	0	0	0	0	0	1	13318	1103	39	1		1	RET	10	43609956	Silent	SNP	G	TCGA-B6-A1KI-01A-11D-A14K-09		43609956	91924791	10	43592										
MUC5B	0	genome.wustl.edu	37	chr11	1268064	1268064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	acaaccacgggcttcacagcCaccccctcctccagcccagg	7	21	1	0			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	1268064	1268064	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.9963	p.A3321	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	9	0	0	100	48	32.43	-	-	-	T	1268064	C	T	1268064	2	4	469	1	0	0	0	0	0	0	0	1	10051	581	21	4		4	MUC5B	11	1268064	Silent	SNP	C	TCGA-B6-A1KI-01A-11D-A14K-09		1268064	133738452	11	43593										
OR8K3	0	genome.wustl.edu	37	chr11	56085814	56085814	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	caatctaacaacggtgaatgAattcattcttacgggaatca	7	8	4	2			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	56085814	56085814	A	T	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	1	known	missense	c.32	p.E11V	0.896	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	44	0	0	107	33	23.57	-	-	-	T	56085814	A	T	56085814	3	4	469	1	0	0	0	0	1	0	0	0	11317	246	9	5	34	5	OR8K3	11	56085814	Missense_Mutation	SNP	A	TCGA-B6-A1KI-01A-11D-A14K-09	54817750	56085814	78920702	12	43594										
ATP11A	0	genome.wustl.edu	37	chr13	113512469	113512469	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	cgtcttctaggtgtcatcggCaaggaaggccgccaggctgc	14	12	3	0			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	13	113512469	113512469	C	G	SNP	ATP11A	ENST00000471555	human	ensembl	69_37n	1	known	missense	c.794	p.A265G	0.958	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP11A	HGNC	ENSG00000068650	46	0	0	100	29	22.48	-	-	-	G	113512469	C	G	113512469	3	3	469	1	0	0	0	0	1	0	0	0	1123	697	25	4	2618	4	ATP11A	13	113512469	Missense_Mutation	SNP	C	TCGA-B6-A1KI-01A-11D-A14K-09		113512469	1657409	13	43595										
GPX2	0	genome.wustl.edu	37	chr14	65406536	65406536	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	tacttgagactgttcaggatCtcctcattctgacagttctc	7	11	5	2			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	14	65406536	65406536	C	G	SNP	GPX2	ENST00000389614	human	ensembl	69_37n	-1	known	missense	c.243	p.E81D	1.000	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	pseudogene	GPX2	HGNC	ENSG00000176153	37	0	0	37	7	15.91	-	-	-	G	65406536	C	G	65406536	3	3	469	1	0	0	0	0	1	0	0	0	6791	912	32	2	333	2	GPX2	14	65406536	Missense_Mutation	SNP	C	TCGA-B6-A1KI-01A-11D-A14K-09		65406536	41943004	14	43596										
TLE3	0	genome.wustl.edu	37	chr15	70347454	70347454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	atgtcccagatcttcacgcaGcccttgccacctgtgtagac	8	15	2	2			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	70347454	70347454	G	A	SNP	TLE3	ENST00000560525	human	ensembl	69_37n	-1	known	missense	c.1733	p.A578V	1.000	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,superfamily_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TLE3	HGNC	ENSG00000140332	68	0	0	39	18	31.58	-	-	-	A	70347454	G	A	70347454	3	1	469	1	0	0	0	0	1	0	0	0	16035	958	34	4	821	4	TLE3	15	70347454	Missense_Mutation	SNP	G	TCGA-B6-A1KI-01A-11D-A14K-09		70347454	32183938	15	43597										
C17orf104	0	genome.wustl.edu	37	chr17	42744021	42744021	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	gaagtgatcattctaactgtCacaatattcagacaaatgat	6	7	4	3			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	42744021	42744021	C	A	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.742	p.H248N	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	30	0	0	115	49	29.88	-	-	-	A	42744021	C	A	42744021	3	1	469	1	0	0	0	0	1	0	0	0	1864	826	29	2	760	2	C17orf104	17	42744021	Missense_Mutation	SNP	C	TCGA-B6-A1KI-01A-11D-A14K-09		42744021	38451189	16	43598										
ABCA5	0	genome.wustl.edu	37	chr17	67246096	67246096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	1	0.541218637992832	1.62365591397849	0	1	1	0	gggactgaacatcttccttaGgaattttataagccaaaata	7	7	1	1			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	67246096	67246096	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.4718	p.P1573L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	32	0	0	86	24	21.82	-	-	-	A	67246096	G	A	67246096	3	1	469	1	0	0	0	0	1	0	0	0	35	1000	35	4	225	4	ABCA5	17	67246096	Missense_Mutation	SNP	G	TCGA-B6-A1KI-01A-11D-A14K-09	24502075	67246096	13949114	17	43599										
BAI2	0	genome.wustl.edu	37	chr1	32202284	32202286	+	In_Frame_Del	DEL	AAG	AAG	-													0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cccagcaaaaggaggagagaAagaagaagtgcaggaaggca							TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	32202284	32202286	AAG	-	DEL	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	in_frame_del	c.3020_3018	p.F1007in_frame_del	1.000:1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	27	0	0	56	17	23.29	-	-	-	-	32202286	AAG	-	32202284	7	5	470	1	0	1	0	1	0	0	0	0	1303	14	1	0	1789	0	BAI2	1	32202284	In_Frame_Del	DEL	AAG	TCGA-B6-A1KN-01A-11D-A13L-09		32202284	217048337	1	43600										
SASS6	0	genome.wustl.edu	37	chr1	100573002	100573002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tccttttgtaatttttcctcCttctcagccaagagtttttc	4	11	1	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	100573002	100573002	C	A	SNP	SASS6	ENST00000287482	human	ensembl	69_37n	-1	known	missense	c.1254	p.K418N	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876	65	0	0	63	31	32.98	-	-	-	A	100573002	C	A	100573002	3	1	470	1	0	0	0	0	1	0	0	0	13937	680	24	4	747	4	SASS6	1	100573002	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	68370718	100573002	148677619	2	43601										
DENND2D	0	genome.wustl.edu	37	chr1	111739850	111739850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tgatgatgcagtacactttgGgaaggcgagggccagggccg	17	8	0	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	111739850	111739850	G	A	SNP	DENND2D	ENST00000357640	human	ensembl	69_37n	-1	known	missense	c.452	p.P151L	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777	32	0	0	21	29	58	-	-	-	A	111739850	G	A	111739850	3	1	470	1	0	0	0	0	1	0	0	0	4467	1232	43	4	995	4	DENND2D	1	111739850	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	11166848	111739850	137510771	3	43602										
SYT11	0	genome.wustl.edu	37	chr1	155851077	155851077	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	aagtgcactttgaaccccatCttcaatgaatctttcatcta	4	11	5	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	155851077	155851077	C	A	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	silent	c.1074	p.I358	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	53	0	0	201	44	17.96	-	-	-	A	155851077	C	A	155851077	2	1	470	1	0	0	0	0	0	0	0	1	15559	903	32	2		2	SYT11	1	155851077	Silent	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	44111227	155851077	93399544	4	43603										
RIT1	0	genome.wustl.edu	37	chr1	155874570	155874570	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	ttggcaggctcatcatcaatAcggatcctgatcttataagc	8	10	4	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	155874570	155874570	A	T	SNP	RIT1	ENST00000368323	human	ensembl	69_37n	-1	known	silent	c.189	p.R63	0.964	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT1	HGNC	ENSG00000143622	71	0	0	85	92	51.69	-	-	-	T	155874570	A	T	155874570	2	4	470	1	0	0	0	0	0	0	0	1	13472	378	14	5		5	RIT1	1	155874570	Silent	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	23493	155874570	93376051	5	43604										
NUAK2	0	genome.wustl.edu	37	chr1	205275345	205275345	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tgtgtagggcttcccattgaCaatctctggcgaggcataga	12	9	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	1	205275345	205275345	C	A	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	missense	c.661	p.V221F	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	48	0	0	133	15	10.14	-	-	-	A	205275345	C	A	205275345	3	1	470	1	0	0	0	0	1	0	0	0	10786	478	17	4	1237	4	NUAK2	1	205275345	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	49400775	205275345	43975276	6	43605										
KIAA1715	0	genome.wustl.edu	37	chr2	176812363	176812363	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cttgtggaggagggccctggTtagggcttgctggtgttgga	19	6	0	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	2	176812363	176812363	T	A	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	missense	c.551	p.N184I	0.940	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	58	0	0	116	33	21.85	-	-	-	A	176812363	T	A	176812363	3	1	470	1	0	0	0	0	1	0	0	0	8306	1725	60	5	755	5	KIAA1715	2	176812363	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09		176812363	66387010	7	43606										
STAT4	0	genome.wustl.edu	37	chr2	191895699	191895700	+	Frame_Shift_Del	DEL	GC	GC	-													0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gaaaataaagggaacatactGcagtttcaattgttgtggga							TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	2	191895699	191895700	GC	-	DEL	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	frame_shift_del	c.2219_2218	p.A740fs	1.000:1.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	51	0	0	140	35	19.77	-	-	-	-	191895700	GC	-	191895699	7	5	470	1	0	1	0	1	0	0	0	0	15358	1333	46	0	35	0	STAT4	2	191895699	Frame_Shift_Del	DEL	GC	TCGA-B6-A1KN-01A-11D-A13L-09	15083336	191895699	51303674	8	43607										
MTERFD2	0	genome.wustl.edu	37	chr2	242038987	242038987	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gaagactggcacctcgccgtAcactgagcaattcattaata	8	11	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	2	242038987	242038987	A	C	SNP	MTERFD2	ENST00000241527	human	ensembl	69_37n	-1	known	missense	c.344	p.V115G	0.001	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD2	HGNC	ENSG00000122085	33	0	0	113	31	21.53	-	-	-	C	242038987	A	C	242038987	3	2	470	1	0	0	0	0	1	0	0	0	9992	391	14	5	813	5	MTERFD2	2	242038987	Missense_Mutation	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	50143288	242038987	1160386	9	43608										
BRPF1	0	genome.wustl.edu	37	chr3	9783057	9783057	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tcctggcagcggctccggcaTgacttggagcgagctcggct	15	13	0	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	3	9783057	9783057	T	G	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	missense	c.1788	p.H596Q	0.640	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	40	0	0	56	9	13.85	-	-	-	G	9783057	T	G	9783057	3	3	470	1	0	0	0	0	1	0	0	0	1528	1461	51	5	1802	5	BRPF1	3	9783057	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09		9783057	188239373	10	43609										
ZBTB11	0	genome.wustl.edu	37	chr3	101375072	101375072	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	aattttagaccatgcttataGataaaagtctttccacagac	5	8	1	3			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	3	101375072	101375072	G	C	SNP	ZBTB11	ENST00000312938	human	ensembl	69_37n	-1	known	missense	c.2067	p.I689M	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422	34	0	0	78	49	38.58	-	-	-	C	101375072	G	C	101375072	3	2	470	1	0	0	0	0	1	0	0	0	17620	932	33	2	1114	2	ZBTB11	3	101375072	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	91592015	101375072	96647358	11	43610										
TBC1D1	0	genome.wustl.edu	37	chr4	38029467	38029467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cacctgacgacattaaccaaTcaggagcaggcgactatttt	8	11	1	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	4	38029467	38029467	T	C	SNP	TBC1D1	ENST00000510573	human	ensembl	69_37n	1	novel	missense	c.211	p.S71P	0.992	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TBC1D1	HGNC	ENSG00000065882	45	0	0	85	22	20.37	-	-	-	C	38029467	T	C	38029467	3	2	470	1	0	0	0	0	1	0	0	0	15689	1432	50	5	1291	5	TBC1D1	4	38029467	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09		38029467	153124809	12	43611										
MMAA	0	genome.wustl.edu	37	chr4	146576496	146576496	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cccacagtccgggaacagatTccacttctggaacaaaaggt	9	12	1	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	4	146576496	146576496	T	G	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	1	known	missense	c.1167	p.I389M	0.998	tigrfam_ArgK	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	16	0	0	46	24	34.29	-	-	-	G	146576496	T	G	146576496	3	3	470	1	0	0	0	0	1	0	0	0	9710	1771	62	5	1189	5	MMAA	4	146576496	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09	108547029	146576496	44577780	13	43612										
CYP4V2	0	genome.wustl.edu	37	chr4	187130348	187130348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	ccgaggagttccagcctgagCggttcttccccgagaatgca	12	13	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	4	187130348	187130348	C	T	SNP	CYP4V2	ENST00000378802	human	ensembl	69_37n	1	known	missense	c.1327	p.R443W	0.696	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4V2	HGNC	ENSG00000145476	18	0	0	63	53	45.69	-	-	-	T	187130348	C	T	187130348	3	4	470	1	0	0	0	0	1	0	0	0	4223	759	27	1	1365	1	CYP4V2	4	187130348	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	40553852	187130348	4023928	14	43613										
ZNF366	0	genome.wustl.edu	37	chr5	71739680	71739680	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	agtataagtaatcagaaaaaGaggggccccgccgggtactc	12	9	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	5	71739680	71739680	G	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.2138	p.S713Y	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	37	0	0	78	20	20.41	-	-	-	T	71739680	G	T	71739680	3	4	470	1	0	0	0	0	1	0	0	0	17966	942	33	2	100	2	ZNF366	5	71739680	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		71739680	109175580	15	43614										
TMCO6	0	genome.wustl.edu	37	chr5	140022616	140022616	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	ttgcctggtgccttcattacAtcatctgcaggtaacagggc	10	11	3	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	5	140022616	140022616	A	C	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	1	known	missense	c.814	p.I272L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	59	0	0	131	85	39.17	-	-	-	C	140022616	A	C	140022616	3	2	470	1	0	0	0	0	1	0	0	0	16095	217	8	5	822	5	TMCO6	5	140022616	Missense_Mutation	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	68282936	140022616	40892644	16	43615										
NT5E	0	genome.wustl.edu	37	chr6	86181085	86181085	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	atggataaactcatcgctcaGaaagtgaggggtgtggacgt	14	6	2	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	6	86181085	86181085	G	T	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	1	known	missense	c.693	p.Q231H	1.000	pfam_Metallo_PEstase_dom,prints_5_nucleotidase/apyrase	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	33	0	0	58	17	22.67	-	-	-	T	86181085	G	T	86181085	3	4	470	1	0	0	0	0	1	0	0	0	10766	933	33	2	703	2	NT5E	6	86181085	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		86181085	84933982	17	43616										
TMEM120A	0	genome.wustl.edu	37	chr7	75617758	75617758	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cctggagttgagcaggaagcGgcaagtgaaggagatgagga	18	5	0	4			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	7	75617758	75617758	G	A	SNP	TMEM120A	ENST00000338761	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMEM120A	HGNC	ENSG00000189077	25	0	0	81	33	28.95	-	-	-	A	75617758	G	A	75617758	1	1	470	0	1	0	0	0	0	0	0	0	16128	1116	39	1		1	TMEM120A	7	75617758	RNA	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		75617758	83520905	18	43617										
MUC17	0	genome.wustl.edu	37	chr7	100679631	100679631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cagcaccacgccggtggccaGtcctgaggctagcacccttt	11	16	0	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	7	100679631	100679631	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.4934	p.S1645N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	99	0	0	366	69	15.86	-	-	-	A	100679631	G	A	100679631	3	1	470	1	0	0	0	0	1	0	0	0	10046	1029	36	4	4944	4	MUC17	7	100679631	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	25061873	100679631	58459032	19	43618										
PPP1R3A	0	genome.wustl.edu	37	chr7	113558745	113558745	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cagtggggctaaaacatattCttctgtgtggaaaatgtccg	11	7	2	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	7	113558745	113558745	C	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	nonsense	c.307	p.E103*	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	41	0	0	79	28	26.17	-	-	-	A	113558745	C	A	113558745	4	1	470	1	0	0	0	0	0	1	0	0	12448	922	32	2	3077	2	PPP1R3A	7	113558745	Nonsense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	12879114	113558745	45579918	20	43619										
PRKDC	0	genome.wustl.edu	37	chr8	48697854	48697855	+	Frame_Shift_Ins	INS	-	-	T													0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gaacctcctttcccaaaatgINStttatcaaattcttttccaa							TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	8	48697854	48697855	-	T	INS	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	frame_shift_ins	c.10924_10923	p.H3641fs	0.979:0.107	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	58	0	0	117	44	27.33	-	-	-	T	48697855	-	T	48697854	7	5	470	1	0	1	1	0	0	0	0	0	12602	1377	48	0	1499	0	PRKDC	8	48697854	Frame_Shift_Ins	INS	-	TCGA-B6-A1KN-01A-11D-A13L-09		48697854	97666168	21	43620										
VCPIP1	0	genome.wustl.edu	37	chr8	67578547	67578547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	catgcaccaagcagtgtccaTccccgtccacatgcactgga	8	16	0	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	8	67578547	67578547	T	G	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.647	p.D216A	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	20	0	0	75	13	14.61	-	-	-	G	67578547	T	G	67578547	3	3	470	1	0	0	0	0	1	0	0	0	17238	1435	50	5	3033	5	VCPIP1	8	67578547	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09	18880693	67578547	78785475	22	43621										
CUBN	0	genome.wustl.edu	37	chr10	16916414	16916414	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tcactaacggtgatggtataCagacagtgcatatcatttgg	10	7	2	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	10	16916414	16916414	C	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.9195	p.L3065	0.045	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	69	0	0	107	115	51.8	-	-	-	G	16916414	C	G	16916414	2	3	470	1	0	0	0	0	0	0	0	1	4082	465	17	4		4	CUBN	10	16916414	Silent	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09		16916414	118618333	23	43622										
AMPD3	0	genome.wustl.edu	37	chr11	10500146	10500146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cacagcaagattggaagggcCccccggcagccagtccggcc	13	16	0	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	11	10500146	10500146	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	missense	c.295	p.P99S	0.005	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	36	0	0	74	44	37.29	-	-	-	T	10500146	C	T	10500146	3	4	470	1	0	0	0	0	1	0	0	0	587	623	22	4	352	4	AMPD3	11	10500146	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09		10500146	124506370	24	43623										
GALNTL4	0	genome.wustl.edu	37	chr11	11394113	11394113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tagacttccatgccttcgtcCagcaggccgatctcctggaa	9	14	1	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	11	11394113	11394113	C	T	SNP	GALNTL4	ENST00000227756	human	ensembl	69_37n	-1	known	silent	c.1041	p.L347	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL4	HGNC	ENSG00000110328	29	0	0	74	31	29.52	-	-	-	T	11394113	C	T	11394113	2	4	470	1	0	0	0	0	0	0	0	1	6273	581	21	4		4	GALNTL4	11	11394113	Silent	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	893967	11394113	123612403	25	43624										
C11orf24	0	genome.wustl.edu	37	chr11	68030078	68030078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	agtcgtgggagcactggaggCcacagtcatactggaggccg	16	10	1	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	11	68030078	68030078	C	T	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	missense	c.385	p.A129T	0.006	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	26	0	0	53	15	21.74	-	-	-	T	68030078	C	T	68030078	3	4	470	1	0	0	0	0	1	0	0	0	1646	739	26	4	968	4	C11orf24	11	68030078	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	56635965	68030078	66976438	26	43625										
TAS2R42	0	genome.wustl.edu	37	chr12	11338943	11338943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	caaggacagaaataaaaaaaGcaaggaggtcaggaacagag	12	5	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	12	11338943	11338943	G	T	SNP	TAS2R42	ENST00000334266	human	ensembl	69_37n	-1	known	missense	c.601	p.L201I	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R42	HGNC	ENSG00000186136	13	0	0	12	7	36.84	-	-	-	T	11338943	G	T	11338943	3	4	470	1	0	0	0	0	1	0	0	0	15672	971	34	4	347	4	TAS2R42	12	11338943	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		11338943	122512952	27	43626										
BCAT1	0	genome.wustl.edu	37	chr12	24989509	24989509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gaagaatgatgccatctagtGgaggagttgccagttcttct	12	7	3	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	12	24989509	24989509	G	A	SNP	BCAT1	ENST00000261192	human	ensembl	69_37n	-1	known	missense	c.839	p.P280L	1.000	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982	44	0	0	104	63	37.72	-	-	-	A	24989509	G	A	24989509	3	1	470	1	0	0	0	0	1	0	0	0	1358	1348	47	4	337	4	BCAT1	12	24989509	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	13650566	24989509	108862386	28	43627										
LRP1	0	genome.wustl.edu	37	chr12	57604136	57604136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cagtgcttcaacggtggcagCtgtttcctcaatgcacggag	12	11	2	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	12	57604136	57604136	C	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.12627	p.S4209R	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	15	0	0	37	8	17.78	-	-	-	A	57604136	C	A	57604136	3	1	470	1	0	0	0	0	1	0	0	0	9017	796	28	4	12953	4	LRP1	12	57604136	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	32614627	57604136	76247759	29	43628										
SCYL2	0	genome.wustl.edu	37	chr12	100732846	100732846	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	taggacaatctgcttttggtAtgcagggtaatcctttcttt	9	7	2	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	12	100732846	100732846	A	T	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.2686	p.M896L	0.993	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	50	0	0	134	31	18.79	-	-	-	T	100732846	A	T	100732846	3	4	470	1	0	0	0	0	1	0	0	0	14036	449	16	5	2752	5	SCYL2	12	100732846	Missense_Mutation	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	43128710	100732846	33119049	30	43629										
HSPH1	0	genome.wustl.edu	37	chr13	31714438	31714438	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tccaatttatcttgcattatCatcttaccctgtcaggaaac	4	11	4	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	13	31714438	31714438	C	A	SNP	HSPH1	ENST00000445273	human	ensembl	69_37n	-1	known	missense	c.1869	p.M623I	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694	102	0	0	228	115	33.43	-	-	-	A	31714438	C	A	31714438	3	1	470	1	0	0	0	0	1	0	0	0	7485	826	29	2	733	2	HSPH1	13	31714438	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09		31714438	83455440	31	43630										
TBC1D4	0	genome.wustl.edu	37	chr13	75880582	75880582	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tcatagtctaatttaactttTctggactggagttcatctct	6	8	5	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	13	75880582	75880582	T	G	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.2619	p.R873S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	57	0	0	42	109	72.19	-	-	-	G	75880582	T	G	75880582	3	3	470	1	0	0	0	0	1	0	0	0	15717	1780	62	5	1305	5	TBC1D4	13	75880582	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09	44166144	75880582	39289296	32	43631										
UBAC2	0	genome.wustl.edu	37	chr13	99890758	99890758	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tcgccctcctcctgcctcacTgccagaagctctttgtgtat	7	16	2	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	13	99890758	99890758	T	C	SNP	UBAC2	ENST00000403766	human	ensembl	69_37n	1	novel	missense	c.109	p.C37R	1.000	NULL	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC2	HGNC	ENSG00000134882	44	0	0	82	44	34.92	-	-	-	C	99890758	T	C	99890758	3	2	470	1	0	0	0	0	1	0	0	0	16932	1580	55	5	275	5	UBAC2	13	99890758	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09	24010176	99890758	15279120	33	43632										
MKRN3	0	genome.wustl.edu	37	chr15	23811029	23811029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tgtctgggccggaccttcccGtctgtgagccctccggggaa	14	14	2	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	15	23811029	23811029	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.100	p.V34I	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	11	0	0	21	10	32.26	-	-	-	A	23811029	G	A	23811029	3	1	470	1	0	0	0	0	1	0	0	0	9679	1145	40	1	102	1	MKRN3	15	23811029	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		23811029	78720363	34	43633										
MEF2A	0	genome.wustl.edu	37	chr15	100252738	100252738	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gcagcagcagcagcagcagcAgcagccgccgccaccaccgc	12	19	0	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	15	100252738	100252738	A	C	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	missense	c.1283	p.Q428P	0.928	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	14	0	0	14	5	26.32	-	-	-	C	100252738	A	C	100252738	3	2	470	1	0	0	0	0	1	0	0	0	9526	188	7	5	1460	5	MEF2A	15	100252738	Missense_Mutation	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	76441709	100252738	2278654	35	43634										
AQP8	0	genome.wustl.edu	37	chr16	25228619	25228619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cgaacggtttgtgcagccatGtctggtcgaactgctgggct	14	10	1	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	16	25228619	25228619	G	T	SNP	AQP8	ENST00000219660	human	ensembl	69_37n	1	known	missense	c.113	p.C38F	0.997	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375	76	0	0	161	110	40.59	-	-	-	T	25228619	G	T	25228619	3	4	470	1	0	0	0	0	1	0	0	0	834	1377	48	4	119	4	AQP8	16	25228619	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		25228619	65126134	36	43635										
PRSS53	0	genome.wustl.edu	37	chr16	31097783	31097783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tgtggggcgactgatgagacGcaggcgcagattgcgtaggg	19	7	0	3			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	16	31097783	31097783	G	A	SNP	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	missense	c.538	p.R180C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	41	0	0	48	32	40	-	-	-	A	31097783	G	A	31097783	3	1	470	1	0	0	0	0	1	0	0	0	12712	1087	38	1	1151	1	PRSS53	16	31097783	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	5869164	31097783	59256970	37	43636										
TP53	0	genome.wustl.edu	37	chr17	7577144	7577144	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cctcaaagctgttccgtcccAgtagattaccactactcagg	7	14	2	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	17	7577144	7577144	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.794	p.L265P	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	32	0	0	35	52	59.77	-	-	-	G	7577144	A	G	7577144	3	3	470	1	0	0	0	0	1	0	0	0	16477	188	7	5	492	5	TP53	17	7577144	Missense_Mutation	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09		7577144	73618066	38	43637										
C17orf75	0	genome.wustl.edu	37	chr17	30665245	30665245	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	atagctcaagtcctttttcaGaccctcctaaaaaacagacc	4	13	2	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	17	30665245	30665245	G	A	SNP	C17orf75	ENST00000225805	human	ensembl	69_37n	-1	known	missense	c.473	p.S158F	1.000	NULL	NULL	-	no_errors	C17orf75	HGNC	ENSG00000108666	44	0	0	189	44	18.88	-	-	-	A	30665245	G	A	30665245	3	1	470	1	0	0	0	0	1	0	0	0	1896	942	33	2	745	2	C17orf75	17	30665245	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	23088101	30665245	50529965	39	43638										
KRTAP4-9	0	genome.wustl.edu	37	chr17	39261786	39261786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cagctgttgtgtatccagctGctgcaggccccagtgctgcc	12	14	0	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	17	39261786	39261786	G	A	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	1	known	missense	c.146	p.C49Y	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	30	0	0	152	18	10.53	-	-	-	A	39261786	G	A	39261786	3	1	470	1	0	0	0	0	1	0	0	0	8611	1319	46	4	148	4	KRTAP4-9	17	39261786	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	8596541	39261786	41933424	40	43639										
ZNF562	0	genome.wustl.edu	37	chr19	9770066	9770066	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tctgtttacctggtaagaatTtgaccggtggtcctctacca	9	10	2	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	19	9770066	9770066	T	C	SNP	ZNF562	ENST00000448622	human	ensembl	69_37n	-1	known	missense	c.103	p.N35D	0.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466	55	0	0	45	73	61.86	-	-	-	C	9770066	T	C	9770066	3	2	470	1	0	0	0	0	1	0	0	0	18089	1841	64	5	1193	5	ZNF562	19	9770066	Missense_Mutation	SNP	T	TCGA-B6-A1KN-01A-11D-A13L-09		9770066	49358917	41	43640										
OLFM2	0	genome.wustl.edu	37	chr19	9967532	9967532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cagtcatccaggagccgaagCgggaccccatggcccgaacg	13	15	1	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	19	9967532	9967532	C	T	SNP	OLFM2	ENST00000264833	human	ensembl	69_37n	-1	known	missense	c.638	p.R213H	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088	11	0	0	14	5	26.32	-	-	-	T	9967532	C	T	9967532	3	4	470	1	0	0	0	0	1	0	0	0	10926	768	27	1	734	1	OLFM2	19	9967532	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	197466	9967532	49161451	42	43641										
ZNF607	0	genome.wustl.edu	37	chr19	38189031	38189031	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	ttaaagggtttctcaccagtAtgaactctatgatgtatact	7	7	2	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	19	38189031	38189031	A	G	SNP	ZNF607	ENST00000355202	human	ensembl	69_37n	-1	known	silent	c.2001	p.H667	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182	44	0	0	106	37	25.87	-	-	-	G	38189031	A	G	38189031	2	3	470	1	0	0	0	0	0	0	0	1	18129	446	16	5		5	ZNF607	19	38189031	Silent	SNP	A	TCGA-B6-A1KN-01A-11D-A13L-09	28221499	38189031	20939952	43	43642										
DSCR6	0	genome.wustl.edu	37	chr21	38390212	38390212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	aaagcgtcaagaatacctgcGgagttccggggagcaagtac	13	9	1	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	21	38390212	38390212	G	A	SNP	DSCR6	ENST00000329553	human	ensembl	69_37n	1	known	missense	c.278	p.R93Q	0.995	NULL	NULL	-	no_errors	DSCR6	HGNC	ENSG00000183145	14	0	0	40	8	16.67	-	-	-	A	38390212	G	A	38390212	3	1	470	1	0	0	0	0	1	0	0	0	4808	1116	39	1	292	1	DSCR6	21	38390212	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		38390212	9739683	44	43643										
B3GALT5	0	genome.wustl.edu	37	chr21	41032794	41032794	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cctggggaccaccagcagtgCagcggaaacgaaagaggtgg	16	10	0	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	21	41032794	41032794	C	T	SNP	B3GALT5	ENST00000343118	human	ensembl	69_37n	1	known	missense	c.308	p.A103V	0.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT5	HGNC	ENSG00000183778	31	0	0	41	19	31.67	-	-	-	T	41032794	C	T	41032794	3	4	470	1	0	0	0	0	1	0	0	0	1254	710	25	4	310	4	B3GALT5	21	41032794	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	2642582	41032794	7097101	45	43644										
NOL12	0	genome.wustl.edu	37	chr22	38083918	38083918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gccggcttccttcctgtaggGagtacctgacaggcttccac	11	14	0	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	22	38083918	38083918	G	A	SNP	NOL12	ENST00000359114	human	ensembl	69_37n	1	known	missense	c.85	p.E29K	1.000	pfam_Nucleolar_protein_12	pfam_Nucleolar_protein_12	-	no_errors	NOL12	HGNC	ENSG00000256872	19	0	0	12	17	58.62	-	-	-	A	38083918	G	A	38083918	3	1	470	1	0	0	0	0	1	0	0	0	10594	1188	41	2	91	2	NOL12	22	38083918	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		38083918	13220648	46	43645										
MLC1	0	genome.wustl.edu	37	chr22	50512644	50512644	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	cgggccagaggggttactcaCggccactaggatccaaaaga	13	11	1	2			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	22	50512644	50512644	C	T	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	splice_site	c.714+1	e7+1	1.000	-	-	-	no_errors	MLC1	HGNC	ENSG00000100427	26	0	0	15	23	60.53	-	-	-	T	50512644	C	T	50512644	5	4	470	1	0	0	0	0	0	0	1	0	9683	550	19	1	438	1	MLC1	22	50512644	Splice_Site	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	12428726	50512644	791922	47	43646										
PPEF1	0	genome.wustl.edu	37	chrX	18824526	18824526	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tttttctttaaccaggtggtGactatattttctgcttctaa	6	7	3	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	X	18824526	18824526	G	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	silent	c.1257	p.V419	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	45	0	0	88	36	29.03	-	-	-	A	18824526	G	A	18824526	2	1	470	1	0	0	0	0	0	0	0	1	12380	1277	45	2		2	PPEF1	23	18824526	Silent	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09		18824526	136446034	48	43647										
SHROOM4	0	genome.wustl.edu	37	chrX	50377358	50377358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	tcgagcggccccgggtccctCcacttcgcctaccacccatc	8	21	0	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	X	50377358	50377358	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.1715	p.G572E	0.024	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	32	0	0	68	13	16.05	-	-	-	T	50377358	C	T	50377358	3	4	470	1	0	0	0	0	1	0	0	0	14385	855	30	2	2790	2	SHROOM4	23	50377358	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	31552832	50377358	104893202	49	43648										
ARHGEF9	0	genome.wustl.edu	37	chrX	62917053	62917053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	ctgaggtgggggtcatcattGttatactgtttctccaggtc	12	8	3	1			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	X	62917053	62917053	G	A	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	silent	c.513	p.N171	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	87	0	0	293	60	17	-	-	-	A	62917053	G	A	62917053	2	1	470	1	0	0	0	0	0	0	0	1	914	1368	48	4		4	ARHGEF9	23	62917053	Silent	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	12539695	62917053	92353507	50	43649										
BCORL1	0	genome.wustl.edu	37	chrX	129155089	129155089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	agccgacaaagccggagtccCagtctccaggaaaacgagcc	11	14	1	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	X	129155089	129155089	C	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.3571	p.Q1191K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	31	0	0	41	23	35.94	-	-	-	A	129155089	C	A	129155089	3	1	470	1	0	0	0	0	1	0	0	0	1391	595	21	4	3585	4	BCORL1	23	129155089	Missense_Mutation	SNP	C	TCGA-B6-A1KN-01A-11D-A13L-09	66238036	129155089	26115471	51	43650										
L1CAM	0	genome.wustl.edu	37	chrX	153130895	153130895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.845715245555727	1.11500701262272	4.2741935483871	0.814132104454685	1	1	0	gttggcgggcaccaccacatGgtctttgtggatatgtctct	12	10	2	0			TCGA-B6-A1KN-01A-11D-A13L-09	TCGA-B6-A1KN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c1ad09c8-4237-48f0-b04c-7ee8ccaf8cf1	2a8d9494-2d88-4577-bb21-05a62a07d8f9	X	153130895	153130895	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.2614	p.H872Y	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	26	0	0	139	32	18.6	-	-	-	A	153130895	G	A	153130895	3	1	470	1	0	0	0	0	1	0	0	0	8642	1348	47	4	1201	4	L1CAM	23	153130895	Missense_Mutation	SNP	G	TCGA-B6-A1KN-01A-11D-A13L-09	23975806	153130895	2139665	52	43651										
SYCP1	0	genome.wustl.edu	37	chr1	115419390	115419390	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	atgaaaaaatccaacaccttGaacaagaatacaagaaggaa	6	7	0	4			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	1	115419390	115419390	G	A	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.760	p.E254K	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	31	0	0	43	21	32.81	-	-	-	A	115419390	G	A	115419390	3	1	471	1	0	0	0	0	1	0	0	0	15523	1291	45	2	798	2	SYCP1	1	115419390	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		115419390	133831231	1	43652										
NT5DC2	0	genome.wustl.edu	37	chr3	52568585	52568585	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tcccggcgcacgcccctcgtGagatgctgtggtcttttcta	11	14	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	3	52568585	52568585	G	A	SNP	NT5DC2	ENST00000307076	human	ensembl	69_37n	-1	known	missense	c.85	p.H29Y	0.002	pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC2	HGNC	ENSG00000168268	46	0	0	36	16	30.77	-	-	-	A	52568585	G	A	52568585	3	1	471	1	0	0	0	0	1	0	0	0	10764	1290	45	2	1769	2	NT5DC2	3	52568585	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		52568585	145453845	2	43653										
PPARGC1B	0	genome.wustl.edu	37	chr5	149212395	149212395	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gacaaggagccgggtgaggaCtgcccgagcccccagccagc	15	15	0	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	5	149212395	149212395	C	G	SNP	PPARGC1B	ENST00000309241	human	ensembl	69_37n	1	known	missense	c.759	p.D253E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	21	0	0	15	6	27.27	-	-	-	G	149212395	C	G	149212395	3	3	471	1	0	0	0	0	1	0	0	0	12374	564	20	4	784	4	PPARGC1B	5	149212395	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		149212395	31702865	3	43654										
SYNE1	0	genome.wustl.edu	37	chr6	152529115	152529115	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tttgcatcttacctgcacttCatcaaagagggtccttgctt	7	11	3	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	6	152529115	152529115	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.22816	p.E7606*	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	91	0	0	50	7	12.28	-	-	-	A	152529115	C	A	152529115	4	1	471	1	0	0	0	0	0	1	0	0	15537	835	29	2	3738	2	SYNE1	6	152529115	Nonsense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		152529115	18585952	4	43655										
C1GALT1	0	genome.wustl.edu	37	chr7	7283157	7283157	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tttccactacttttttagggTcctggttgctgctctgatct	8	10	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	7	7283157	7283157	T	G	SNP	C1GALT1	ENST00000223122	human	ensembl	69_37n	1	known	silent	c.891	p.G297	1.000	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392	170	0	0	74	41	35.65	-	-	-	G	7283157	T	G	7283157	2	3	471	1	0	0	0	0	0	0	0	1	1971	1654	58	5		5	C1GALT1	7	7283157	Silent	SNP	T	TCGA-B6-A2IU-01A-32D-A19T-09		7283157	151855506	5	43656										
TGS1	0	genome.wustl.edu	37	chr8	56686187	56686187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gaagtggtaaaatgtgctgcGagaagtggagccgcgtggcg	18	6	0	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	8	56686187	56686187	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.10	p.E4K	1.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	69	0	0	74	10	11.9	-	-	-	A	56686187	G	A	56686187	3	1	471	1	0	0	0	0	1	0	0	0	15932	1059	37	1	12	1	TGS1	8	56686187	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		56686187	89677835	6	43657										
TBC1D2	0	genome.wustl.edu	37	chr9	100962632	100962632	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	cttctcgttgtacttgaaaaTggccaaggcatagcgaaaca	9	9	1	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	9	100962632	100962632	T	C	SNP	TBC1D2	ENST00000375064	human	ensembl	69_37n	-1	known	missense	c.2482	p.I828V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	66	0	0	41	24	36.92	-	-	-	C	100962632	T	C	100962632	3	2	471	1	0	0	0	0	1	0	0	0	15700	1479	51	5		5	TBC1D2	9	100962632	Missense_Mutation	SNP	T	TCGA-B6-A2IU-01A-32D-A19T-09		100962632	40250799	7	43658										
ZNF438	0	genome.wustl.edu	37	chr10	31134088	31134088	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	aagagaaacgtgtggaggccAggacactcagggccctggca	15	10	1	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	10	31134088	31134088	A	G	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	silent	c.2289	p.P763	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	94	0	0	54	8	12.9	-	-	-	G	31134088	A	G	31134088	2	3	471	1	0	0	0	0	0	0	0	1	18006	175	7	5		5	ZNF438	10	31134088	Silent	SNP	A	TCGA-B6-A2IU-01A-32D-A19T-09		31134088	104400659	8	43659										
KRTAP5-10	0	genome.wustl.edu	37	chr11	71276951	71276951	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tccaaggggggctgtggttcTtgtgggggctccaagggggg	21	7	1	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	11	71276951	71276951	T	C	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	1	known	silent	c.318	p.S106	0.000	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	27	0	0	46	9	16.36	-	-	-	C	71276951	T	C	71276951	2	2	471	1	0	0	0	0	0	0	0	1	8613	1596	56	5		5	KRTAP5-10	11	71276951	Silent	SNP	T	TCGA-B6-A2IU-01A-32D-A19T-09		71276951	63729565	9	43660										
GUCY1A2	0	genome.wustl.edu	37	chr11	106810212	106810212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tttattttcagagccagaagCctcaggcttggttctaatca	8	9	4	2			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	11	106810212	106810212	C	T	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	missense	c.1180	p.A394T	1.000	pfam_Haem_no_assoc-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	24	0	0	16	7	30.43	-	-	-	T	106810212	C	T	106810212	3	4	471	1	0	0	0	0	1	0	0	0	6944	739	26	4	1038	4	GUCY1A2	11	106810212	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	35533261	106810212	28196304	10	43661										
SIDT2	0	genome.wustl.edu	37	chr11	117063014	117063014	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ttctggatcgtcttctccatCattcacatcatcgccaccct	4	16	6	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	11	117063014	117063014	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.1980	p.I660	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	58	0	0	29	11	27.5	-	-	-	T	117063014	C	T	117063014	2	4	471	1	0	0	0	0	0	0	0	1	14392	816	29	2		2	SIDT2	11	117063014	Silent	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	10252802	117063014	17943502	11	43662										
CDKN1B	0	genome.wustl.edu	37	chr12	12871244	12871244	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ataaggaagcgacctgcaacCgacggtaatgaccctttccc	9	13	0	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	12	12871244	12871244	C	T	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	silent	c.471	p.T157	0.090	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	12	0	0	11	6	35.29	-	-	-	T	12871244	C	T	12871244	2	4	471	1	0	0	0	0	0	0	0	1	3188	639	23	1		1	CDKN1B	12	12871244	Silent	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		12871244	120980651	12	43663										
ATP2A2	0	genome.wustl.edu	37	chr12	110778473	110778473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tcttattttagaccaatctgAccttcgttggctgcgtgggc	10	10	2	2			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	12	110778473	110778473	A	G	SNP	ATP2A2	ENST00000539276	human	ensembl	69_37n	1	known	missense	c.1771	p.T591A	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A2	HGNC	ENSG00000174437	63	0	0	23	14	36.84	-	-	-	G	110778473	A	G	110778473	3	3	471	1	0	0	0	0	1	0	0	0	1141	275	10	5	1825	5	ATP2A2	12	110778473	Missense_Mutation	SNP	A	TCGA-B6-A2IU-01A-32D-A19T-09	97907229	110778473	23073422	13	43664										
BRAP	0	genome.wustl.edu	37	chr12	112096541	112096541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	aactcattaaatctcttaccTctaactgtaaggcatctatt	3	10	4	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	12	112096541	112096541	T	G	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.1220	p.E407A	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	155	0	0	76	35	31.53	-	-	-	G	112096541	T	G	112096541	3	3	471	1	0	0	0	0	1	0	0	0	1505	1565	54	5	574	5	BRAP	12	112096541	Missense_Mutation	SNP	T	TCGA-B6-A2IU-01A-32D-A19T-09	1318068	112096541	21755354	14	43665										
RILPL1	0	genome.wustl.edu	37	chr12	124008165	124008165	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gaggtcctgcgcctcccctcGccacacatcctccaccagct	7	21	0	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	12	124008165	124008165	G	A	SNP	RILPL1	ENST00000376874	human	ensembl	69_37n	-1	known	nonsense	c.337	p.R113*	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026	58	0	0	26	15	35.71	-	-	-	A	124008165	G	A	124008165	4	1	471	1	0	0	0	0	0	1	0	0	13445	1095	38	1	898	1	RILPL1	12	124008165	Nonsense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	11911624	124008165	9843730	15	43666										
UGGT2	0	genome.wustl.edu	37	chr13	96506620	96506620	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	atgcccagtatcctgttttcCagaaacgatatccatccatt	5	12	0	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	13	96506620	96506620	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	nonsense	c.4118	p.W1373*	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	75	0	0	29	9	23.68	-	-	-	T	96506620	C	T	96506620	4	4	471	1	0	0	0	0	0	1	0	0	17039	595	21	4	452	4	UGGT2	13	96506620	Nonsense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		96506620	18663258	16	43667										
RYR3	0	genome.wustl.edu	37	chr15	33855084	33855084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tcacaagcgagacatagaagGcatgggagttccagaaatca	11	8	2	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	15	33855084	33855084	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.1019	p.G340D	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	63	0	0	24	15	38.46	-	-	-	A	33855084	G	A	33855084	3	1	471	1	0	0	0	0	1	0	0	0	13856	1203	42	4	1061	4	RYR3	15	33855084	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		33855084	68676308	17	43668										
GALK2	0	genome.wustl.edu	37	chr15	49611904	49611904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gaagcacctgaaaacatggtCcagctgctgggagagttgat	13	8	0	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	15	49611904	49611904	C	T	SNP	GALK2	ENST00000558399	human	ensembl	69_37n	1	putative	missense	c.328	p.P110S	0.987	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GALK2	HGNC	ENSG00000156958	107	0	0	52	26	33.33	-	-	-	T	49611904	C	T	49611904	3	4	471	1	0	0	0	0	1	0	0	0	6254	842	30	2	1129	2	GALK2	15	49611904	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	15756820	49611904	52919488	18	43669										
CDH1	0	genome.wustl.edu	37	chr16	68842647	68842647	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ttttctacagcatcactggcCaaggagctgacacaccccct	7	15	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	16	68842647	68842647	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	61	0	0	20	10	33.33	-	-	-	T	68842647	C	T	68842647	4	4	471	1	0	0	0	0	0	1	0	0	3124	595	21	4	601	4	CDH1	16	68842647	Nonsense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		68842647	21512106	19	43670										
RHBDL3	0	genome.wustl.edu	37	chr17	30625209	30625209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	aattgggcttgtctacgtggCcggtgttgtggcaggtaggc	17	7	1	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	17	30625209	30625209	C	T	SNP	RHBDL3	ENST00000269051	human	ensembl	69_37n	1	known	missense	c.767	p.A256V	0.998	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_HAND_2	-	no_errors	RHBDL3	HGNC	ENSG00000141314	97	0	0	65	32	32.99	-	-	-	T	30625209	C	T	30625209	3	4	471	1	0	0	0	0	1	0	0	0	13407	739	26	4	789	4	RHBDL3	17	30625209	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09		30625209	50570001	20	43671										
ACACA	0	genome.wustl.edu	37	chr17	35506834	35506834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gaattaagtgagaattctcaAcctggatggttctctgtccc	9	9	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	17	35506834	35506834	A	G	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.5633	p.V1878A	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	71	0	0	42	12	22.22	-	-	-	G	35506834	A	G	35506834	3	3	471	1	0	0	0	0	1	0	0	0	106	43	2	5	1566	5	ACACA	17	35506834	Missense_Mutation	SNP	A	TCGA-B6-A2IU-01A-32D-A19T-09	4881625	35506834	45688376	21	43672										
NT5C3L	0	genome.wustl.edu	37	chr17	39988648	39988648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	caccaccatcactcaccattCcaccatatgaggtagcttct	4	16	3	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	17	39988648	39988648	C	T	SNP	NT5C3L	ENST00000269534	human	ensembl	69_37n	-1	known	missense	c.286	p.E96K	1.000	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3L	HGNC	ENSG00000141698	165	0	0	94	51	35.17	-	-	-	T	39988648	C	T	39988648	3	4	471	1	0	0	0	0	1	0	0	0	10762	864	30	2	612	2	NT5C3L	17	39988648	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	4481814	39988648	41206562	22	43673										
AZI1	0	genome.wustl.edu	37	chr17	79180952	79180952	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ttccaggtggctcccttctcGctgggggctgtgctcaggct	14	13	2	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	17	79180952	79180952	G	A	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	silent	c.360	p.S120	0.000	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	98	0	0	78	27	25.71	-	-	-	A	79180952	G	A	79180952	2	1	471	1	0	0	0	0	0	0	0	1	1244	1078	38	1		1	AZI1	17	79180952	Silent	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	39192304	79180952	2014258	23	43674										
FN3K	0	genome.wustl.edu	37	chr17	80708405	80708405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ggggcccattatttacgaccCggcttccttctatggccatt	9	13	1	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	17	80708405	80708405	C	T	SNP	FN3K	ENST00000300784	human	ensembl	69_37n	1	known	missense	c.704	p.P235L	1.000	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3K	HGNC	ENSG00000167363	44	0	0	68	16	19.05	-	-	-	T	80708405	C	T	80708405	3	4	471	1	0	0	0	0	1	0	0	0	6009	652	23	1	726	1	FN3K	17	80708405	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	1527453	80708405	486805	24	43675										
EMILIN2	0	genome.wustl.edu	37	chr18	2913121	2913121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tcacggccaccctcacccccGagagagacgcctacgtggaa	10	17	2	2			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	18	2913121	2913121	G	A	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.2881	p.E961K	0.998	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	32	0	0	34	5	12.82	-	-	-	A	2913121	G	A	2913121	3	1	471	1	0	0	0	0	1	0	0	0	5131	1059	37	1	2911	1	EMILIN2	18	2913121	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		2913121	75164127	25	43676										
SMAD4	0	genome.wustl.edu	37	chr18	48591919	48591919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ggacccttctggaggagatcGcttttgtttgggtcaactct	12	9	3	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	18	48591919	48591919	G	A	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	missense	c.1082	p.R361H	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	112	0	0	41	24	36.92	-	-	-	A	48591919	G	A	48591919	3	1	471	1	0	0	0	0	1	0	0	0	14849	1087	38	1	1112	1	SMAD4	18	48591919	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	45678798	48591919	29485329	26	43677										
APC2	0	genome.wustl.edu	37	chr19	1465789	1465789	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ccgaggcggcaaggaggcagAgaaggacaccagtggggagg	20	8	0	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	19	1465789	1465789	A	C	SNP	APC2	ENST00000233607	human	ensembl	69_37n	1	known	missense	c.2489	p.E830A	1.000	NULL	pfam_APC_basic_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	14	0	0	19	10	34.48	-	-	-	C	1465789	A	C	1465789	3	2	471	1	0	0	0	0	1	0	0	0	765	304	11	5	2543	5	APC2	19	1465789	Missense_Mutation	SNP	A	TCGA-B6-A2IU-01A-32D-A19T-09		1465789	57663194	27	43678										
UNC13A	0	genome.wustl.edu	37	chr19	17756912	17756912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ctttgcctgcaagccctgggCgcagaccactggaagacaca	11	14	0	2			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	19	17756912	17756912	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.2317	p.A773T	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	62	0	0	30	18	37.5	-	-	-	T	17756912	C	T	17756912	3	4	471	1	0	0	0	0	1	0	0	0	17081	768	27	1	3162	1	UNC13A	19	17756912	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	16291123	17756912	41372071	28	43679										
CD22	0	genome.wustl.edu	37	chr19	35828818	35828818	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	aagaagcagaatacattcacGctaaacctgcgcgaagtgac	9	10	1	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	19	35828818	35828818	G	A	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	silent	c.879	p.T293	0.000	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	58	0	0	41	18	29.03	-	-	-	A	35828818	G	A	35828818	2	1	471	1	0	0	0	0	0	0	0	1	3014	1074	38	1		1	CD22	19	35828818	Silent	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	18071906	35828818	23300165	29	43680										
ZNF665	0	genome.wustl.edu	37	chr19	53668566	53668566	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ttctccggtatggatgatctGatgcttagttaagtttgaat	10	5	2	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	19	53668566	53668566	G	A	SNP	ZNF665	ENST00000396424	human	ensembl	69_37n	-1	known	nonsense	c.1177	p.Q393*	0.621	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497	103	0	0	53	29	35.37	-	-	-	A	53668566	G	A	53668566	4	1	471	1	0	0	0	0	0	1	0	0	18169	1299	45	2	863	2	ZNF665	19	53668566	Nonsense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	17839748	53668566	5460417	30	43681										
MXRA5	0	genome.wustl.edu	37	chrX	3248432	3248432	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gtgatcactctcagcttgttGtagctgaacttgaaaacctg	9	9	2	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	3248432	3248432	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.336	p.Y112	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	48	0	0	44	10	18.18	-	-	-	A	3248432	G	A	3248432	2	1	471	1	0	0	0	0	0	0	0	1	10075	1372	48	4		4	MXRA5	23	3248432	Silent	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09		3248432	152022128	31	43682										
DCAF8L1	0	genome.wustl.edu	37	chrX	27999269	27999269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tgattttctgtgctggcatcGttcaggaaaccaccatccct	8	12	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	27999269	27999269	G	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.183	p.N61K	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	172	0	0	85	43	33.59	-	-	-	T	27999269	G	T	27999269	3	4	471	1	0	0	0	0	1	0	0	0	4309	1136	40	3	1623	3	DCAF8L1	23	27999269	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	24750837	27999269	127271291	32	43683										
PCDH11X	0	genome.wustl.edu	37	chrX	91131969	91131969	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	tgagtgttactgatacaaatGacaaccacccagtctttaag	7	9	1	3			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	91131969	91131969	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.730	p.D244N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	92	0	0	83	16	16.16	-	-	-	A	91131969	G	A	91131969	3	1	471	1	0	0	0	0	1	0	0	0	11581	1290	45	2	736	2	PCDH11X	23	91131969	Missense_Mutation	SNP	G	TCGA-B6-A2IU-01A-32D-A19T-09	63132700	91131969	64138591	33	43684										
NRK	0	genome.wustl.edu	37	chrX	105153759	105153759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	gaggttcagggcaaagtcatCatggagacctgaaaagcttg	13	7	3	2			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	105153759	105153759	C	T	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.2129	p.S710L	0.137	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	36	0	0	32	7	17.95	-	-	-	T	105153759	C	T	105153759	3	4	471	1	0	0	0	0	1	0	0	0	10728	838	29	2	2176	2	NRK	23	105153759	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	14021790	105153759	50116801	34	43685										
ZNF75D	0	genome.wustl.edu	37	chrX	134427658	134427658	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ggcaatctttcttcttacctCattctttgttccatcaggct	5	12	6	0			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	134427658	134427658	C	T	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	missense	c.409	p.E137K	0.019	pfam_Tscrpt_reg_SCAN,smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	56	0	0	26	6	18.75	-	-	-	T	134427658	C	T	134427658	3	4	471	1	0	0	0	0	1	0	0	0	18228	835	29	2	1143	2	ZNF75D	23	134427658	Missense_Mutation	SNP	C	TCGA-B6-A2IU-01A-32D-A19T-09	29273899	134427658	20842902	35	43686										
PNMA5	0	genome.wustl.edu	37	chrX	152159358	152159358	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.22166911584178	1.91207207207207	0	1.99174174174174	0.0013986013986014	0.0333617601910285	0	ggggctctaagcgcagcaggAaagtggagactttctctcca	13	10	2	1			TCGA-B6-A2IU-01A-32D-A19T-09	TCGA-B6-A2IU-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	90c8e3e4-644f-4275-9812-39fbce0aebe4	3956afe0-b1e4-4a21-ad52-7de27823ad88	X	152159358	152159358	A	G	SNP	PNMA5	ENST00000361887	human	ensembl	69_37n	-1	known	missense	c.785	p.F262S	0.002	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883	24	0	0	12	7	36.84	-	-	-	G	152159358	A	G	152159358	3	3	471	1	0	0	0	0	1	0	0	0	12230	246	9	5	565	5	PNMA5	23	152159358	Missense_Mutation	SNP	A	TCGA-B6-A2IU-01A-32D-A19T-09	17731700	152159358	3111202	36	43687										
ALDH4A1	0	genome.wustl.edu	37	chr1	19201887	19201887	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gccactcacttatcctgggaGaacactgcccccgtgaggcc	10	16	1	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	19201887	19201887	G	T	SNP	ALDH4A1	ENST00000290597	human	ensembl	69_37n	-1	known	missense	c.1449	p.F483L	0.999	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	-	no_errors	ALDH4A1	HGNC	ENSG00000159423	66	0	0	61	10	14.08	-	-	-	T	19201887	G	T	19201887	3	4	472	1	0	0	0	0	1	0	0	0	501	933	33	2	254	2	ALDH4A1	1	19201887	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		19201887	230048734	1	43688										
CATSPER4	0	genome.wustl.edu	37	chr1	26517279	26517279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	taccattcacgagtcctacgGtcggccagaggagcaagtgc	12	12	1	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	26517279	26517279	G	T	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	missense	c.161	p.G54V	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	35	0	0	33	4	10.81	-	-	-	T	26517279	G	T	26517279	3	4	472	1	0	0	0	0	1	0	0	0	2715	1261	44	4	163	4	CATSPER4	1	26517279	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	7315392	26517279	222733342	2	43689										
PTPRU	0	genome.wustl.edu	37	chr1	29630448	29630448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tccctgtggccggaagggctCcccataccacacggggcagc	13	16	0	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	29630448	29630448	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.2588	p.S863F	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	34	0	0	32	4	11.11	-	-	-	T	29630448	C	T	29630448	3	4	472	1	0	0	0	0	1	0	0	0	12896	855	30	2	2654	2	PTPRU	1	29630448	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	3113169	29630448	219620173	3	43690										
AHCYL1	0	genome.wustl.edu	37	chr1	110561019	110561019	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	taagaatgtagtgacacgggAgcacttggatcgcatgaaaa	12	6	0	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	110561019	110561019	A	T	SNP	AHCYL1	ENST00000369799	human	ensembl	69_37n	1	known	missense	c.1148	p.E383V	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710	73	0	0	36	8	18.18	-	-	-	T	110561019	A	T	110561019	3	4	472	1	0	0	0	0	1	0	0	0	410	304	11	5	1194	5	AHCYL1	1	110561019	Missense_Mutation	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09	80930571	110561019	138689602	4	43691										
NOTCH2	0	genome.wustl.edu	37	chr1	120458941	120458942	+	Frame_Shift_Del	DEL	AG	AG	-													0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	acagttggaccttctcactcAgagacttcttcctcctacta							TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	120458941	120458942	AG	-	DEL	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_del	c.6404_6403	p.L2135fs	0.769:0.670	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	42	0	0	24	7	21.21	-	-	-	-	120458942	AG	-	120458941	7	5	472	1	0	1	0	1	0	0	0	0	10620	188	7	0	1015	0	NOTCH2	1	120458941	Frame_Shift_Del	DEL	AG	TCGA-B6-A3ZX-01A-11D-A23C-09	9897922	120458941	128791680	5	43692										
SETDB1	0	genome.wustl.edu	37	chr1	150913841	150913841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ctgccttaagaaagtcagctCaagatgttcagaagttcatg	9	8	4	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	150913841	150913841	C	G	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.484	p.Q162E	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	83	0	0	68	11	13.92	-	-	-	G	150913841	C	G	150913841	3	3	472	1	0	0	0	0	1	0	0	0	14226	827	29	2	498	2	SETDB1	1	150913841	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	30454900	150913841	98336780	6	43693										
PIGM	0	genome.wustl.edu	37	chr1	160001318	160001318	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gggtgtaacggtacgtggctCtcaggtaaggcgagcgcccc	16	11	1	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	160001318	160001318	C	G	SNP	PIGM	ENST00000368090	human	ensembl	69_37n	-1	known	missense	c.212	p.R71T	0.935	NULL	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315	30	0	0	39	5	11.36	-	-	-	G	160001318	C	G	160001318	3	3	472	1	0	0	0	0	1	0	0	0	11966	913	32	2	1063	2	PIGM	1	160001318	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	9087477	160001318	89249303	7	43694										
ATP1A2	0	genome.wustl.edu	37	chr1	160106729	160106729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gtggtggagttcacgtgccaCacggcattctttgccagcat	12	11	2	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	160106729	160106729	C	T	SNP	ATP1A2	ENST00000447527	human	ensembl	69_37n	1	known	missense	c.1829	p.T610I	1.000	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP1A2	HGNC	ENSG00000018625	48	0	0	26	10	27.78	-	-	-	T	160106729	C	T	160106729	3	4	472	1	0	0	0	0	1	0	0	0	1133	477	17	4	2826	4	ATP1A2	1	160106729	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	105411	160106729	89143892	8	43695										
RCOR3	0	genome.wustl.edu	37	chr1	211452614	211452614	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	aagaaacacatccaatggatGggaatgatagtgattatgat	10	4	0	4			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	211452614	211452614	G	A	SNP	RCOR3	ENST00000534460	human	ensembl	69_37n	1	novel	nonsense	c.35	p.W12*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RCOR3	HGNC	ENSG00000117625	38	0	0	24	4	14.29	-	-	-	A	211452614	G	A	211452614	4	1	472	1	0	0	0	0	0	1	0	0	13267	1348	47	4	702	4	RCOR3	1	211452614	Nonsense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	51345885	211452614	37798007	9	43696										
AHCTF1	0	genome.wustl.edu	37	chr1	247076643	247076643	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gccactccaaaaagccatcgCagacttggatgtaaatgctg	9	11	0	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	247076643	247076643	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.474	p.L158	0.937	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	63	0	0	44	7	13.73	-	-	-	T	247076643	C	T	247076643	2	4	472	1	0	0	0	0	0	0	0	1	408	697	25	4		4	AHCTF1	1	247076643	Silent	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	35624029	247076643	2173978	10	43697										
SNX17	0	genome.wustl.edu	37	chr2	27598552	27598552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tccttccgggtcacccgcatGcgatgctggcgggtcacctc	12	16	2	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	27598552	27598552	G	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	missense	c.954	p.M318I	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	28	0	0	37	16	30.19	-	-	-	A	27598552	G	A	27598552	3	1	472	1	0	0	0	0	1	0	0	0	14977	1319	46	4	992	4	SNX17	2	27598552	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		27598552	215600821	11	43698										
PTCD3	0	genome.wustl.edu	37	chr2	86364662	86364662	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gcagcagtgacagcgacagtGacaccagtgaaggcaaatga	13	9	0	4			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	86364662	86364662	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	69_37n	1	known	missense	c.2050	p.D684N	0.998	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	72	0	0	46	7	13.21	-	-	-	A	86364662	G	A	86364662	3	1	472	1	0	0	0	0	1	0	0	0	12809	1290	45	2	2144	2	PTCD3	2	86364662	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	58766110	86364662	156834711	12	43699										
PASK	0	genome.wustl.edu	37	chr2	242080104	242080104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tcaggggcagcagggcagtgCagtttacttgtacaaatatt	12	7	1	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	242080104	242080104	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	silent	c.261	p.L87	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	38	0	0	29	5	14.71	-	-	-	T	242080104	C	T	242080104	2	4	472	1	0	0	0	0	0	0	0	1	11545	697	25	4		4	PASK	2	242080104	Silent	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	155715442	242080104	1119269	13	43700										
SYN2	0	genome.wustl.edu	37	chr3	12226673	12226673	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	atatttgcacttccagatggGttgcataagaatcaggtcct	9	8	1	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	3	12226673	12226673	G	T	SNP	SYN2	ENST00000425297	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	23	0	0	16	3	15.79	-	-	-	T	12226673	G	T	12226673	1	4	472	0	1	0	0	0	0	0	0	0	15533	1276	44	4		4	SYN2	3	12226673	RNA	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		12226673	185795757	14	43701										
CD200	0	genome.wustl.edu	37	chr3	112052068	112052068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ccaggagcaaggatggagagGctggtgagcggggccggggc	22	8	0	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	3	112052068	112052068	G	T	SNP	CD200	ENST00000473539	human	ensembl	69_37n	1	known	missense	c.9	p.R3S	0.003	NULL	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD200	HGNC	ENSG00000091972	8	0	0	10	4	28.57	-	-	-	T	112052068	G	T	112052068	3	4	472	1	0	0	0	0	1	0	0	0	3009	1194	42	4	11	4	CD200	3	112052068	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	99825395	112052068	85970362	15	43702										
SFRP2	0	genome.wustl.edu	37	chr4	154702642	154702642	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	atgctgcgggagatgcgcttGaactctctctgccccttctg	11	13	3	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	4	154702642	154702642	G	C	SNP	SFRP2	ENST00000274063	human	ensembl	69_37n	-1	known	missense	c.849	p.F283L	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP2	HGNC	ENSG00000145423	73	0	0	48	14	22.58	-	-	-	C	154702642	G	C	154702642	3	2	472	1	0	0	0	0	1	0	0	0	14250	1281	45	2	42	2	SFRP2	4	154702642	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		154702642	36451634	16	43703										
MYO10	0	genome.wustl.edu	37	chr5	16764477	16764477	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	agcagcacgcatacagagccAtggccagggagtccctgctg	13	13	0	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	16764477	16764477	A	G	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.1208	p.M403T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	53	0	0	54	9	14.29	-	-	-	G	16764477	A	G	16764477	3	3	472	1	0	0	0	0	1	0	0	0	10134	217	8	5	5088	5	MYO10	5	16764477	Missense_Mutation	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09		16764477	164150783	17	43704										
CARD6	0	genome.wustl.edu	37	chr5	40852755	40852756	+	Frame_Shift_Ins	INS	-	-	A													0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gttttcaggggggcctacagINSaggatacagaaaagtttctg							TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	40852755	40852756	-	A	INS	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	frame_shift_ins	c.1321_1322	p.D442fs	0.000:0.000	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	34	0	0	39	8	17.02	-	-	-	A	40852756	-	A	40852755	7	5	472	1	0	1	1	0	0	0	0	0	2675	943	33	0	1331	0	CARD6	5	40852755	Frame_Shift_Ins	INS	-	TCGA-B6-A3ZX-01A-11D-A23C-09	24088278	40852755	140062505	18	43705										
WNT8A	0	genome.wustl.edu	37	chr5	137426285	137426285	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gggagctgcagcatacagacAtgctggctgcagctggctga	15	10	0	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	137426285	137426285	A	G	SNP	WNT8A	ENST00000361560	human	ensembl	69_37n	1	known	silent	c.579	p.T193	0.214	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492	46	0	0	33	4	10.81	-	-	-	G	137426285	A	G	137426285	2	3	472	1	0	0	0	0	0	0	0	1	17493	204	8	5		5	WNT8A	5	137426285	Silent	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09	96573530	137426285	43488975	19	43706										
SKIV2L	0	genome.wustl.edu	37	chr6	31927109	31927109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	atcccctggacctaccccttCgggccgtggagctcggatgc	12	16	0	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	31927109	31927109	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	missense	c.58	p.R20W	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	29	0	0	26	6	18.75	-	-	-	T	31927109	C	T	31927109	3	4	472	1	0	0	0	0	1	0	0	0	14448	875	31	1	64	1	SKIV2L	6	31927109	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09		31927109	139187958	20	43707										
HLA-DMA	0	genome.wustl.edu	37	chr6	32917497	32917497	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gaaaaggcctggaagctgagTccatcgacagctgagacaaa	12	9	0	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	32917497	32917497	T	C	SNP	HLA-DMA	ENST00000374843	human	ensembl	69_37n	-1	known	silent	c.543	p.G181	0.999	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DMA	HGNC	ENSG00000204257	37	0	0	31	5	13.89	-	-	-	C	32917497	T	C	32917497	2	2	472	1	0	0	0	0	0	0	0	1	7249	1654	58	5		5	HLA-DMA	6	32917497	Silent	SNP	T	TCGA-B6-A3ZX-01A-11D-A23C-09	990388	32917497	138197570	21	43708										
PLAGL1	0	genome.wustl.edu	37	chr6	144262571	144262571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	taaaaatcaattatctgaatGcatgatggaaatgaggcagg	10	4	2	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	144262571	144262571	G	T	SNP	PLAGL1	ENST00000354765	human	ensembl	69_37n	-1	known	missense	c.1382	p.A461E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL1	HGNC	ENSG00000118495	27	0	0	11	4	26.67	-	-	-	T	144262571	G	T	144262571	3	4	472	1	0	0	0	0	1	0	0	0	12093	1319	46	4	13	4	PLAGL1	6	144262571	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	111345074	144262571	26852496	22	43709										
HOXA10	0	genome.wustl.edu	37	chr7	27213491	27213491	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ggcgctggctggggtggttgCggcgggggcggcggctgctg	25	9	0	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	27213491	27213491	C	A	SNP	HOXA10	ENST00000283921	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA10	HGNC	ENSG00000253293	12	0	0	10	7	41.18	-	-	-	A	27213491	C	A	27213491	2	1	472	1	0	0	0	0	0	0	0	1	7340	755	27	3		3	HOXA10	7	27213491	Silent	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09		27213491	131925172	23	43710										
ZNF680	0	genome.wustl.edu	37	chr7	64004794	64004794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	agaattctatggccacatccCtaaatgtcagtggtccctga	8	11	2	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	64004794	64004794	C	A	SNP	ZNF680	ENST00000309683	human	ensembl	69_37n	-1	known	missense	c.47	p.R16M	0.141	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041	34	0	0	27	4	12.9	-	-	-	A	64004794	C	A	64004794	3	1	472	1	0	0	0	0	1	0	0	0	18183	681	24	4	1680	4	ZNF680	7	64004794	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	36791303	64004794	95133869	24	43711										
SAMD9	0	genome.wustl.edu	37	chr7	92732838	92732838	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	aagctctctgttctttgggaGagagttgctgtattacggca	12	7	2	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	92732838	92732838	G	T	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2573	p.S858Y	0.994	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	40	0	0	17	3	15	-	-	-	T	92732838	G	T	92732838	3	4	472	1	0	0	0	0	1	0	0	0	13912	942	33	2	2200	2	SAMD9	7	92732838	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	28728044	92732838	66405825	25	43712										
TAF1L	0	genome.wustl.edu	37	chr9	32634453	32634453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tcaaacccactgccatcttcGgagacacccagcatatcata	5	15	3	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	9	32634453	32634453	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.1125	p.S375	0.998	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	148	0	0	105	18	14.63	-	-	-	A	32634453	G	A	32634453	2	1	472	1	0	0	0	0	0	0	0	1	15615	1103	39	1		1	TAF1L	9	32634453	Silent	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		32634453	108578978	26	43713										
CYLC2	0	genome.wustl.edu	37	chr9	105767034	105767034	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	aaccattatggatgtaccgtTctttaatgagaatttctgag	8	6	2	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	9	105767034	105767034	T	A	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	missense	c.238	p.S80T	1.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	65	0	0	35	5	12.5	-	-	-	A	105767034	T	A	105767034	3	1	472	1	0	0	0	0	1	0	0	0	4173	1783	62	5	252	5	CYLC2	9	105767034	Missense_Mutation	SNP	T	TCGA-B6-A3ZX-01A-11D-A23C-09	73132581	105767034	35446397	27	43714										
API5	0	genome.wustl.edu	37	chr11	43349344	43349344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	aattgtgtgttttaggtattGaaattgttggcggagatgag	14	1	0	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	43349344	43349344	G	C	SNP	API5	ENST00000531273	human	ensembl	69_37n	1	known	missense	c.861	p.L287F	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	65	0	0	59	14	19.18	-	-	-	C	43349344	G	C	43349344	3	2	472	1	0	0	0	0	1	0	0	0	774	1281	45	2	891	2	API5	11	43349344	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		43349344	91657172	28	43715										
MCAM	0	genome.wustl.edu	37	chr11	119182273	119182273	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ttccaggagatggtgggccgGgggtgccctgacgcttcaca	16	11	1	2			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	119182273	119182273	G	C	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	silent	c.1374	p.P458	0.076	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	29	0	0	15	8	34.78	-	-	-	C	119182273	G	C	119182273	2	2	472	1	0	0	0	0	0	0	0	1	9439	1219	43	4		4	MCAM	11	119182273	Silent	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	75832929	119182273	15824243	29	43716										
ABCC9	0	genome.wustl.edu	37	chr12	21970180	21970180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	aactgttcaccttcttcactGcacccatctggacctccagg	6	16	4	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	21970180	21970180	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.3833	p.A1278V	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	45	0	0	31	6	16.22	-	-	-	A	21970180	G	A	21970180	3	1	472	1	0	0	0	0	1	0	0	0	59	1319	46	4	990	4	ABCC9	12	21970180	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		21970180	111881715	30	43717										
LRRC10	0	genome.wustl.edu	37	chr12	70004049	70004049	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	acatcaatcacctccaggaaGggcatgtgaagcagcacagt	10	11	2	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	70004049	70004049	G	T	SNP	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.131	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	28	0	0	24	4	14.29	-	-	-	T	70004049	G	T	70004049	2	4	472	1	0	0	0	0	0	0	0	1	9033	987	35	4		4	LRRC10	12	70004049	Silent	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	48033869	70004049	63847846	31	43718										
EEA1	0	genome.wustl.edu	37	chr12	93244971	93244971	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tcacgttccaaggtcatgttAtccattagtgtttgaacttg	8	8	2	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	93244971	93244971	A	G	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.714	p.D238	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	105	0	0	97	11	10.19	-	-	-	G	93244971	A	G	93244971	2	3	472	1	0	0	0	0	0	0	0	1	4956	446	16	5		5	EEA1	12	93244971	Silent	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09	23240922	93244971	40606924	32	43719										
ZNF280D	0	genome.wustl.edu	37	chr15	56959000	56959000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tacttccattaggcttacttGtattaggtttacttgcgttg	8	7	0	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	15	56959000	56959000	G	A	SNP	ZNF280D	ENST00000267807	human	ensembl	69_37n	-1	known	missense	c.1730	p.T577I	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871	95	0	0	52	7	11.86	-	-	-	A	56959000	G	A	56959000	3	1	472	1	0	0	0	0	1	0	0	0	17913	1377	48	4	1241	4	ZNF280D	15	56959000	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		56959000	45572392	33	43720										
E2F4	0	genome.wustl.edu	37	chr16	67226205	67226205	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gaaaagagcctgggactgctCaccaccaagttcgtgtccct	10	13	1	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	16	67226205	67226205	C	T	SNP	E2F4	ENST00000379378	human	ensembl	69_37n	1	known	silent	c.75	p.L25	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	32	0	0	32	5	13.51	-	-	-	T	67226205	C	T	67226205	2	4	472	1	0	0	0	0	0	0	0	1	4904	813	29	2		2	E2F4	16	67226205	Silent	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09		67226205	23128548	34	43721										
TP53	0	genome.wustl.edu	37	chr17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	cggctcatagggcaccaccaCactatgtcgaaaagtgtttc	9	12	1	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	7578203	7578203	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0	37	7	15.91	-	-	-	T	7578203	C	T	7578203	3	4	472	1	0	0	0	0	1	0	0	0	16477	478	17	4	648	4	TP53	17	7578203	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09		7578203	73617007	35	43722										
PER1	0	genome.wustl.edu	37	chr17	8053091	8053091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	acctggttctgaagtgtgtaCtcagacgtgatgtgctccag	12	9	2	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	8053091	8053091	C	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.633	p.E211D	1.000	smart_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	42	0	0	34	7	17.07	-	-	-	A	8053091	C	A	8053091	3	1	472	1	0	0	0	0	1	0	0	0	11802	564	20	4	3315	4	PER1	17	8053091	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	474888	8053091	73142119	36	43723										
SPAG5	0	genome.wustl.edu	37	chr17	26905539	26905539	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	taaggtgggtcacctcctctCtaaggctctgggaatgagaa	12	9	3	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	26905539	26905539	C	T	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.3206	p.R1069K	0.731	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	40	0	0	31	4	11.43	-	-	-	T	26905539	C	T	26905539	3	4	472	1	0	0	0	0	1	0	0	0	15072	913	32	2	391	2	SPAG5	17	26905539	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	18852448	26905539	54289671	37	43724										
GGNBP2	0	genome.wustl.edu	37	chr17	34942557	34942557	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ttgaatgttgggcaaattctGaagagaacgacacaaaagga	11	5	1	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	34942557	34942557	G	T	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	1	known	nonsense	c.1570	p.E524*	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	37	0	0	18	3	14.29	-	-	-	T	34942557	G	T	34942557	4	4	472	1	0	0	0	0	0	1	0	0	6411	1291	45	2	1612	2	GGNBP2	17	34942557	Nonsense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	8037018	34942557	46252653	38	43725										
TBC1D3	0	genome.wustl.edu	37	chr17	36339584	36339584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	actggagcccacctgggggtGgcaggtccccctgctttctt	13	14	1	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	36339584	36339584	G	T	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	missense	c.1073	p.P358Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	14	0	0	6	5	45.45	-	-	-	T	36339584	G	T	36339584	3	4	472	1	0	0	0	0	1	0	0	0	15712	1348	47	4	2286	4	TBC1D3	17	36339584	Missense_Mutation	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09	1397027	36339584	44855626	39	43726										
LRRC37A3	0	genome.wustl.edu	37	chr17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	agattcgacctccctagaagActcagaaggctgaactggct	10	11	1	5			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	69	0	0	39	5	11.36	-	-	-	T	62892271	A	T	62892271	3	4	472	1	0	0	0	0	1	0	0	0	9059	275	10	5	3847	5	LRRC37A3	17	62892271	Missense_Mutation	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09	26552687	62892271	18302939	40	43727										
OTOP2	0	genome.wustl.edu	37	chr17	72923826	72923826	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gcggccgtggtggatgaatcTgtgcaccaatcccactccta	11	13	1	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	72923826	72923826	T	G	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	silent	c.576	p.S192	0.004	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	93	0	0	64	18	21.95	-	-	-	G	72923826	T	G	72923826	2	3	472	1	0	0	0	0	0	0	0	1	11379	1567	55	5		5	OTOP2	17	72923826	Silent	SNP	T	TCGA-B6-A3ZX-01A-11D-A23C-09	10031555	72923826	8271384	41	43728										
ACTL9	0	genome.wustl.edu	37	chr19	8808020	8808020	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	tcgaagccggtgaagagcgaGgacccaccgcagagaagcac	14	12	0	3			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	19	8808020	8808020	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	silent	c.1032	p.S344	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	45	0	0	36	4	10	-	-	-	A	8808020	G	A	8808020	2	1	472	1	0	0	0	0	0	0	0	1	203	987	35	4		4	ACTL9	19	8808020	Silent	SNP	G	TCGA-B6-A3ZX-01A-11D-A23C-09		8808020	50320963	42	43729										
GYS1	0	genome.wustl.edu	37	chr19	49490506	49490506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	ggacagcgtcgttggcctcgCggtcgtaccacggcactccg	14	15	0	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	19	49490506	49490506	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.437	p.R146H	0.997	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	79	0	0	67	10	12.99	-	-	-	T	49490506	C	T	49490506	3	4	472	1	0	0	0	0	1	0	0	0	6963	768	27	1	1832	1	GYS1	19	49490506	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09	40682486	49490506	9638477	43	43730										
PIGT	0	genome.wustl.edu	37	chr20	44044826	44044826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gctatgccgcttgctctgctCgtcctgttgctcctggggcc	12	15	1	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	20	44044826	44044826	C	T	SNP	PIGT	ENST00000432270	human	ensembl	69_37n	1	putative	missense	c.4	p.R2C	0.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	PIGT	HGNC	ENSG00000124155	34	0	0	39	6	13.33	-	-	-	T	44044826	C	T	44044826	3	4	472	1	0	0	0	0	1	0	0	0	11973	871	31	1	32	1	PIGT	20	44044826	Missense_Mutation	SNP	C	TCGA-B6-A3ZX-01A-11D-A23C-09		44044826	18980694	44	43731										
GPKOW	0	genome.wustl.edu	37	chrX	48980041	48980041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	gggcagtggaagcagccgtcAgcggcaaaacaccctctttg	13	12	2	0			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	X	48980041	48980041	A	T	SNP	GPKOW	ENST00000156109	human	ensembl	69_37n	-1	known	missense	c.32	p.L11Q	0.044	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	88	0	0	69	14	16.87	-	-	-	T	48980041	A	T	48980041	3	4	472	1	0	0	0	0	1	0	0	0	6663	188	7	5	1442	5	GPKOW	23	48980041	Missense_Mutation	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09		48980041	106290519	45	43732										
ABCB7	0	genome.wustl.edu	37	chrX	74318816	74318816	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152173913043478	7	0.0519087071050446	2.70592885375494	6.80347826086957	1.50076726342711	1	1	0	cccagcgaaatggcaactctAgctcgtagatctggcctgtc	10	13	2	1			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	X	74318816	74318816	A	G	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	silent	c.417	p.A139	0.888	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	59	0	0	43	8	15.69	-	-	-	G	74318816	A	G	74318816	2	3	472	1	0	0	0	0	0	0	0	1	46	407	15	5		5	ABCB7	23	74318816	Silent	SNP	A	TCGA-B6-A3ZX-01A-11D-A23C-09	25338775	74318816	80951744	46	43733										
PLCH2	0	genome.wustl.edu	37	chr1	2418615	2418615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gccacgccgtcctgcaggctTcaccaactacaccaggagcc	9	18	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	2418615	2418615	T	C	SNP	PLCH2	ENST00000378486	human	ensembl	69_37n	1	known	missense	c.914	p.F305S	1.000	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCH2	HGNC	ENSG00000149527	60	0	0	100	18	15.25	-	-	-	C	2418615	T	C	2418615	3	2	473	1	0	0	0	0	1	0	0	0	12112	1783	62	5	940	5	PLCH2	1	2418615	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		2418615	246832006	1	43734										
SLC25A34	0	genome.wustl.edu	37	chr1	16063204	16063204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cctgcagaaggggctggctgCcggccttctgtaccaaggcc	14	14	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	16063204	16063204	C	A	SNP	SLC25A34	ENST00000294454	human	ensembl	69_37n	1	known	missense	c.224	p.A75D	0.734	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A34	HGNC	ENSG00000162461	51	0	0	41	15	26.79	-	-	-	A	16063204	C	A	16063204	3	1	473	1	0	0	0	0	1	0	0	0	14587	739	26	4	226	4	SLC25A34	1	16063204	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	13644589	16063204	233187417	2	43735										
SPEN	0	genome.wustl.edu	37	chr1	16254874	16254874	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gaaagatttgagtctgaccgGgacagagaccatgagaggag	15	6	1	5			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	16254874	16254874	G	C	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.2139	p.R713	0.960	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	18	0	0	14	10	41.67	-	-	-	C	16254874	G	C	16254874	2	2	473	1	0	0	0	0	0	0	0	1	15129	1219	43	4		4	SPEN	1	16254874	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	191670	16254874	232995747	3	43736										
ARHGEF19	0	genome.wustl.edu	37	chr1	16532255	16532255	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggggtcctcagggggcttctCagcacatccttactgccctt	11	14	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	16532255	16532255	C	G	SNP	ARHGEF19	ENST00000471928	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	28	0	0	15	12	44.44	-	-	-	G	16532255	C	G	16532255	1	3	473	0	1	0	0	0	0	0	0	0	904	841	29	2		2	ARHGEF19	1	16532255	RNA	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	277381	16532255	232718366	4	43737										
COL16A1	0	genome.wustl.edu	37	chr1	32165447	32165447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tcacgggggccgcccccaggCgcaggatgagaggccccttg	16	15	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	32165447	32165447	C	T	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.233	p.R78H	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	61	0	0	37	14	27.45	-	-	-	T	32165447	C	T	32165447	3	4	473	1	0	0	0	0	1	0	0	0	3703	768	27	1	4853	1	COL16A1	1	32165447	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	15633192	32165447	217085174	5	43738										
C1orf141	0	genome.wustl.edu	37	chr1	67568957	67568957	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gtctttttcctttttatgagCattagactgaatgttgaaca	7	6	1	4			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	67568957	67568957	C	T	SNP	C1orf141	ENST00000448166	human	ensembl	69_37n	-1	known	missense	c.523	p.A175T	0.013	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	C1orf141	HGNC	ENSG00000203963	50	0	0	35	7	16.67	-	-	-	T	67568957	C	T	67568957	3	4	473	1	0	0	0	0	1	0	0	0	2020	725	25	4		4	C1orf141	1	67568957	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	35403510	67568957	181681664	6	43739										
BCAS2	0	genome.wustl.edu	37	chr1	115123985	115123985	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cttagtaggtcggtatctgcGagtttcctcctccaccagcg	10	13	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	115123985	115123985	G	C	SNP	BCAS2	ENST00000369541	human	ensembl	69_37n	-1	known	missense	c.121	p.R41G	0.995	pfam_BCAS2	pfam_BCAS2	-	no_errors	BCAS2	HGNC	ENSG00000116752	43	0	0	43	9	17.31	-	-	-	C	115123985	G	C	115123985	3	2	473	1	0	0	0	0	1	0	0	0	1355	1058	37	3	580	3	BCAS2	1	115123985	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	47555028	115123985	134126636	7	43740										
TTF2	0	genome.wustl.edu	37	chr1	117634446	117634446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tccctcttggaagtggcactGgagtttgggtctgaggagcc	15	9	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	117634446	117634446	G	A	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	1	known	silent	c.2679	p.L893	0.569	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	64	0	0	71	15	17.44	-	-	-	A	117634446	G	A	117634446	2	1	473	1	0	0	0	0	0	0	0	1	16816	1335	47	4		4	TTF2	1	117634446	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	2510461	117634446	131616175	8	43741										
HSD3B1	0	genome.wustl.edu	37	chr1	120050204	120050204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctgaaggagatcagggtcttGgacaaggccttcggaccaga	14	9	2	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	120050204	120050204	G	C	SNP	HSD3B1	ENST00000235547	human	ensembl	69_37n	1	known	missense	c.111	p.L37F	0.974	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857	117	0	0	61	32	34.41	-	-	-	C	120050204	G	C	120050204	3	2	473	1	0	0	0	0	1	0	0	0	7441	1339	47	4	107	4	HSD3B1	1	120050204	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	2415758	120050204	129200417	9	43742										
NOTCH2	0	genome.wustl.edu	37	chr1	120491104	120491104	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cctggtggacattcacacatGtagctgccctgggtgttatg	12	10	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	120491104	120491104	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	silent	c.2685	p.Y895	1.000	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	79	0	0	133	18	11.92	-	-	-	A	120491104	G	A	120491104	2	1	473	1	0	0	0	0	0	0	0	1	10620	1372	48	4		4	NOTCH2	1	120491104	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	440900	120491104	128759517	10	43743										
OTUD7B	0	genome.wustl.edu	37	chr1	149915938	149915938	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tccagcccatccatctggctCagggggctctctgtagccat	10	15	3	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	149915938	149915938	C	T	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.2350	p.E784K	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	87	0	0	162	19	10.5	-	-	-	T	149915938	C	T	149915938	3	4	473	1	0	0	0	0	1	0	0	0	11392	835	29	2	185	2	OTUD7B	1	149915938	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	29424834	149915938	99334683	11	43744										
SELENBP1	0	genome.wustl.edu	37	chr1	151338791	151338791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggatggtggagctgagtgcgCagcccacaaagccttgggca	16	10	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	151338791	151338791	C	T	SNP	SELENBP1	ENST00000368868	human	ensembl	69_37n	-1	known	missense	c.803	p.C268Y	1.000	pfam_Se-bd	pfam_Se-bd	-	no_errors	SELENBP1	HGNC	ENSG00000143416	65	0	0	111	30	21.28	-	-	-	T	151338791	C	T	151338791	3	4	473	1	0	0	0	0	1	0	0	0	14102	710	25	4	639	4	SELENBP1	1	151338791	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	1422853	151338791	97911830	12	43745										
IVL	0	genome.wustl.edu	37	chr1	152882825	152882825	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cagcaggaggggcagctggaGctcccagagcagcaggaggg	19	10	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	152882825	152882825	G	C	SNP	IVL	ENST00000368764	human	ensembl	69_37n	1	known	missense	c.552	p.E184D	0.000	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207	33	0	0	48	14	22.58	-	-	-	C	152882825	G	C	152882825	3	2	473	1	0	0	0	0	1	0	0	0	7983	962	34	4	554	4	IVL	1	152882825	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	1544034	152882825	96367796	13	43746										
PYHIN1	0	genome.wustl.edu	37	chr1	158913631	158913631	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aaattcaggataaaacaggaAgtatggctgtagtaggaaaa	11	3	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	158913631	158913631	A	C	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.1054	p.S352R	0.365	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	32	0	0	47	6	11.32	-	-	-	C	158913631	A	C	158913631	3	2	473	1	0	0	0	0	1	0	0	0	12948	72	3	5	1072	5	PYHIN1	1	158913631	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	6030806	158913631	90336990	14	43747										
MPZL1	0	genome.wustl.edu	37	chr1	167734870	167734870	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atacgccaaaagaaatcttcGtggcaaatggtacacaaggg	10	8	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	167734870	167734870	G	C	SNP	MPZL1	ENST00000359523	human	ensembl	69_37n	1	known	missense	c.142	p.V48L	0.998	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL1	HGNC	ENSG00000197965	33	0	0	27	23	46	-	-	-	C	167734870	G	C	167734870	3	2	473	1	0	0	0	0	1	0	0	0	9821	1145	40	3	148	3	MPZL1	1	167734870	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	8821239	167734870	81515751	15	43748										
AVPR1B	0	genome.wustl.edu	37	chr1	206224466	206224466	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttctgggcctctgtgggatgCcaaccccacccctcggggca	12	16	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	206224466	206224466	C	A	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	missense	c.26	p.A9D	0.004	prints_Vprs_rcpt_V1B	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	91	0	0	93	20	17.7	-	-	-	A	206224466	C	A	206224466	3	1	473	1	0	0	0	0	1	0	0	0	1236	739	26	4	28	4	AVPR1B	1	206224466	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	38489596	206224466	43026155	16	43749										
USH2A	0	genome.wustl.edu	37	chr1	215933099	215933099	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	actcaattgatattgagaaaCgaggccattgggcttttctg	10	7	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	215933099	215933099	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11134	p.V3712I	0.996	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	48	0	0	35	37	51.39	-	-	-	T	215933099	C	T	215933099	3	4	473	1	0	0	0	0	1	0	0	0	17133	536	19	1	4538	1	USH2A	1	215933099	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	9708633	215933099	33317522	17	43750										
MIA3	0	genome.wustl.edu	37	chr1	222835811	222835811	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttaaaaaagcaaactgttctCcaagagcctgaagtcccctc	6	12	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	222835811	222835811	C	T	SNP	MIA3	ENST00000479370	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.989	-	-	-	no_errors	MIA3	HGNC	ENSG00000154305	10	0	0	8	8	50	-	-	-	T	222835811	C	T	222835811	1	4	473	0	1	0	0	0	0	0	0	0	9636	870	30	2		2	MIA3	1	222835811	RNA	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	6902712	222835811	26414810	18	43751										
OR2T8	0	genome.wustl.edu	37	chr1	248084798	248084798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cgggctcctgcaggctgttgCtaccctgagcttcccatatt	10	14	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	248084798	248084798	C	T	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.479	p.A160V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	12	0	0	16	8	33.33	-	-	-	T	248084798	C	T	248084798	3	4	473	1	0	0	0	0	1	0	0	0	11103	797	28	4	481	4	OR2T8	1	248084798	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	25248987	248084798	1165823	19	43752										
OR2M7	0	genome.wustl.edu	37	chr1	248487708	248487708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gaagtacatgggggtgtggaGctgggtatccaggtagatga	18	4	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	1	248487708	248487708	G	T	SNP	OR2M7	ENST00000317965	human	ensembl	69_37n	-1	known	missense	c.163	p.L55I	0.336	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186	120	0	0	197	36	15.45	-	-	-	T	248487708	G	T	248487708	3	4	473	1	0	0	0	0	1	0	0	0	11087	971	34	4	778	4	OR2M7	1	248487708	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	402910	248487708	762913	20	43753										
SH3YL1	0	genome.wustl.edu	37	chr2	247593	247593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctatcccaatggctgagggtGcagaccattctaataaaaaa	8	9	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	247593	247593	G	T	SNP	SH3YL1	ENST00000356150	human	ensembl	69_37n	-1	known	missense	c.236	p.A79E	1.000	NULL	pfam_Ysc84_actin-binding,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3YL1	HGNC	ENSG00000035115	34	0	0	36	4	10	-	-	-	T	247593	G	T	247593	3	4	473	1	0	0	0	0	1	0	0	0	14352	1319	46	4	820	4	SH3YL1	2	247593	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		247593	242951780	21	43754										
MCFD2	0	genome.wustl.edu	37	chr2	47132590	47132590	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttgtatataaccaggagatgGccaaataacatctactgcag	8	8	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	47132590	47132590	G	A	SNP	MCFD2	ENST00000470873	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MCFD2	HGNC	ENSG00000180398	54	0	0	95	23	19.49	-	-	-	A	47132590	G	A	47132590	1	1	473	0	1	0	0	0	0	0	0	0	9452	1218	42	4		4	MCFD2	2	47132590	RNA	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	46884997	47132590	196066783	22	43755										
SPTBN1	0	genome.wustl.edu	37	chr2	54872550	54872550	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gcataacctgctggcctccaAagagatccatcagttcaaca	7	13	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	54872550	54872550	A	G	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.4454	p.K1485R	1.000	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	30	0	0	44	6	12	-	-	-	G	54872550	A	G	54872550	3	3	473	1	0	0	0	0	1	0	0	0	15210	14	1	5	4645	5	SPTBN1	2	54872550	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	7739960	54872550	188326823	23	43756										
CD8B	0	genome.wustl.edu	37	chr2	87085339	87085339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctcctgttccacctcttcacCgtggatagtcccttttgcgg	8	15	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	87085339	87085339	C	T	SNP	CD8B	ENST00000331469	human	ensembl	69_37n	-1	known	missense	c.244	p.G82S	0.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8B	HGNC	ENSG00000172116	109	0	0	115	70	37.84	-	-	-	T	87085339	C	T	87085339	3	4	473	1	0	0	0	0	1	0	0	0	3074	652	23	1	682	1	CD8B	2	87085339	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	32212789	87085339	156114034	24	43757										
IL1RL1	0	genome.wustl.edu	37	chr2	102955408	102955408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	acaaacaaacaaaagtattcCcactcaggaaagaaatcgtg	6	9	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	102955408	102955408	C	A	SNP	IL1RL1	ENST00000233954	human	ensembl	69_37n	1	known	missense	c.173	p.P58H	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RL1	HGNC	ENSG00000115602	51	0	0	30	18	37.5	-	-	-	A	102955408	C	A	102955408	3	1	473	1	0	0	0	0	1	0	0	0	7717	623	22	4	179	4	IL1RL1	2	102955408	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	15870069	102955408	140243965	25	43758										
IL1RL1	0	genome.wustl.edu	37	chr2	102965550	102965550	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cattttcagatggaaagctcTatgatgcttatgttgtctac	8	7	3	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	102965550	102965550	T	A	SNP	IL1RL1	ENST00000233954	human	ensembl	69_37n	1	known	missense	c.1129	p.Y377N	1.000	superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RL1	HGNC	ENSG00000115602	78	0	0	91	18	16.51	-	-	-	A	102965550	T	A	102965550	3	1	473	1	0	0	0	0	1	0	0	0	7717	1522	53	5	1180	5	IL1RL1	2	102965550	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	10142	102965550	140233823	26	43759										
LIMS1	0	genome.wustl.edu	37	chr2	109292433	109292433	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atctgtggtgcttgccgacgGcccatcgaagggcgcgtggt	16	11	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	109292433	109292433	G	T	SNP	LIMS1	ENST00000542845	human	ensembl	69_37n	1	known	silent	c.780	p.R260	0.998	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756	144	0	0	156	46	22.77	-	-	-	T	109292433	G	T	109292433	2	4	473	1	0	0	0	0	0	0	0	1	8858	1190	42	4		4	LIMS1	2	109292433	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	6326883	109292433	133906940	27	43760										
CCDC74A	0	genome.wustl.edu	37	chr2	132287905	132287905	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgactggtggatggagccagCctgggaacatcgcagctggg	17	9	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	132287905	132287905	C	A	SNP	CCDC74A	ENST00000467992	human	ensembl	69_37n	1	known	missense	c.355	p.P119T	0.015	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	68	0	0	73	11	13.1	-	-	-	A	132287905	C	A	132287905	3	1	473	1	0	0	0	0	1	0	0	0	2874	754	26	4		4	CCDC74A	2	132287905	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	22995472	132287905	110911468	28	43761										
LCT	0	genome.wustl.edu	37	chr2	136567233	136567233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tcccgtggtagaacaaatctCtttcgaacttgggttggctg	11	9	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	136567233	136567233	C	G	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2684	p.R895T	1.000	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	55	0	0	51	30	36.59	-	-	-	G	136567233	C	G	136567233	3	3	473	1	0	0	0	0	1	0	0	0	8747	913	32	2	3139	2	LCT	2	136567233	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	4279328	136567233	106632140	29	43762										
ANKAR	0	genome.wustl.edu	37	chr2	190561055	190561055	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgtcaactgtgcaatgctaaCttcaaggtcaaccagaggcg	10	10	3	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	190561055	190561055	C	A	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.1668	p.N556K	0.151	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	78	0	0	50	49	49.49	-	-	-	A	190561055	C	A	190561055	3	1	473	1	0	0	0	0	1	0	0	0	623	564	20	4	1690	4	ANKAR	2	190561055	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	53993822	190561055	52638318	30	43763										
ALS2	0	genome.wustl.edu	37	chr2	202619363	202619363	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	accactgtcctcgttttcacCcgtgcagcctttcttaagag	7	14	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	2	202619363	202619363	C	T	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	silent	c.1503	p.R501	0.966	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	45	0	0	19	8	29.63	-	-	-	T	202619363	C	T	202619363	2	4	473	1	0	0	0	0	0	0	0	1	550	610	22	4		4	ALS2	2	202619363	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	12058308	202619363	40580010	31	43764										
HRH1	0	genome.wustl.edu	37	chr3	11301811	11301811	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atccttctctcgaacggactCagataccaccacagagacag	7	14	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	11301811	11301811	C	A	SNP	HRH1	ENST00000397056	human	ensembl	69_37n	1	known	nonsense	c.1088	p.S363*	0.035	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H1_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH1	HGNC	ENSG00000196639	29	0	0	11	18	62.07	-	-	-	A	11301811	C	A	11301811	4	1	473	1	0	0	0	0	0	1	0	0	7406	838	29	2	1090	2	HRH1	3	11301811	Nonsense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		11301811	186720619	32	43765										
SUSD5	0	genome.wustl.edu	37	chr3	33194613	33194613	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggatgtggttaggtgtctgcTtgacagtgttcactgttaat	13	5	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	33194613	33194613	T	G	SNP	SUSD5	ENST00000309558	human	ensembl	69_37n	-1	known	missense	c.1511	p.K504T	0.000	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705	180	0	0	178	63	26.14	-	-	-	G	33194613	T	G	33194613	3	3	473	1	0	0	0	0	1	0	0	0	15502	1609	56	5	382	5	SUSD5	3	33194613	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	21892802	33194613	164827817	33	43766										
ITIH1	0	genome.wustl.edu	37	chr3	52818385	52818385	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aggttcccgctctacaacctGggtttcggccacaatgtgga	11	12	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	52818385	52818385	G	C	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	silent	c.1299	p.L433	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	64	0	0	48	12	20	-	-	-	C	52818385	G	C	52818385	2	2	473	1	0	0	0	0	0	0	0	1	7957	1335	47	4		4	ITIH1	3	52818385	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	19623772	52818385	145204045	34	43767										
MORC1	0	genome.wustl.edu	37	chr3	108723919	108723919	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aagaaacaataataatacctGggatctctcagctagtttga	7	7	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	108723919	108723919	G	A	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	nonsense	c.2011	p.Q671*	0.966	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	37	0	0	28	8	22.22	-	-	-	A	108723919	G	A	108723919	4	1	473	1	0	0	0	0	0	1	0	0	9773	1357	47	4	983	4	MORC1	3	108723919	Nonsense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	55905534	108723919	89298511	35	43768										
CCDC37	0	genome.wustl.edu	37	chr3	126135159	126135159	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	acttggcccgacgcccccagGaacggcagcagcagaagacg	13	15	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	126135159	126135159	G	C	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	missense	c.226	p.E76Q	0.973	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	123	0	0	103	32	23.7	-	-	-	C	126135159	G	C	126135159	3	2	473	1	0	0	0	0	1	0	0	0	2835	1188	41	2	240	2	CCDC37	3	126135159	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	17411240	126135159	71887271	36	43769										
PIK3R4	0	genome.wustl.edu	37	chr3	130427331	130427331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttgtcttcctcttcctctgtCattccctaaaaccaaataaa	2	13	4	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	130427331	130427331	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.2337	p.M779I	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	53	0	0	46	16	25.81	-	-	-	T	130427331	C	T	130427331	3	4	473	1	0	0	0	0	1	0	0	0	11995	826	29	2	1783	2	PIK3R4	3	130427331	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	4292172	130427331	67595099	37	43770										
EPHB3	0	genome.wustl.edu	37	chr3	184294819	184294819	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	caacgtggagtttgtgcctcGgcagctgggcctgacggagc	16	11	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	3	184294819	184294819	G	C	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	missense	c.1202	p.R401P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	68	0	0	46	69	60	-	-	-	C	184294819	G	C	184294819	3	2	473	1	0	0	0	0	1	0	0	0	5213	1116	39	3	1220	3	EPHB3	3	184294819	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	53867488	184294819	13727611	38	43771										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68780427	68780427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgattttcactctggcttctCggagatcattttgggattcc	9	9	4	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	4	68780427	68780427	C	A	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	missense	c.983	p.R328L	0.991	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	43	0	0	37	19	33.93	-	-	-	A	68780427	C	A	68780427	3	1	473	1	0	0	0	0	1	0	0	0	16334	884	31	3	290	3	TMPRSS11A	4	68780427	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		68780427	122373849	39	43772										
ELF2	0	genome.wustl.edu	37	chr4	139980596	139980596	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttttcagtagaagctggcatCacagtagggattgtctgaat	11	6	3	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	4	139980596	139980596	C	A	SNP	ELF2	ENST00000379550	human	ensembl	69_37n	-1	known	silent	c.1323	p.V441	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF2	HGNC	ENSG00000109381	126	0	0	93	81	46.55	-	-	-	A	139980596	C	A	139980596	2	1	473	1	0	0	0	0	0	0	0	1	5091	813	29	2		2	ELF2	4	139980596	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	71200169	139980596	51173680	40	43773										
SEMA6A	0	genome.wustl.edu	37	chr5	115782397	115782397	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccggctttagcgagggcgtaCgcttcagccccgaccttgtc	12	15	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	5	115782397	115782397	C	A	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.3056	p.R1019L	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	76	0	0	79	9	10.23	-	-	-	A	115782397	C	A	115782397	3	1	473	1	0	0	0	0	1	0	0	0	14127	536	19	3	91	3	SEMA6A	5	115782397	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		115782397	65132863	41	43774										
ABCC10	0	genome.wustl.edu	37	chr6	43409631	43409631	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tggagaccagacagaggtggGggagaagggtgtcaccctta	17	7	1	4			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	43409631	43409631	G	C	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.2159	p.G720A	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	94	0	0	98	21	17.5	-	-	-	C	43409631	G	C	43409631	3	2	473	1	0	0	0	0	1	0	0	0	50	1232	43	4	2101	4	ABCC10	6	43409631	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		43409631	127705436	42	43775										
RIMS1	0	genome.wustl.edu	37	chr6	73110263	73110263	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atgggtgtggctcagatcttGttggaagaactcgacctgtc	13	8	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	73110263	73110263	G	C	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.4926	p.L1642F	0.439	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	134	0	0	94	18	15.93	-	-	-	C	73110263	G	C	73110263	3	2	473	1	0	0	0	0	1	0	0	0	13453	1368	48	4	5223	4	RIMS1	6	73110263	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	29700632	73110263	98004804	43	43776										
UTRN	0	genome.wustl.edu	37	chr6	144999560	144999560	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aggacatccaggcagaaattGatgcccacaatgacatattt	8	9	0	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	144999560	144999560	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.7498	p.D2500N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	37	0	0	18	3	14.29	-	-	-	A	144999560	G	A	144999560	3	1	473	1	0	0	0	0	1	0	0	0	17200	1290	45	2	7700	2	UTRN	6	144999560	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	71889297	144999560	26115507	44	43777										
GRM1	0	genome.wustl.edu	37	chr6	146350685	146350685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccttttgttttttttcccagCgatctttttggaggtgtccc	8	10	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	146350685	146350685	C	T	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.32	p.A11V	0.005	prints_GPCR_3_mtglu_rcpt_1	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	79	0	0	56	14	20	-	-	-	T	146350685	C	T	146350685	3	4	473	1	0	0	0	0	1	0	0	0	6847	768	27	1	34	1	GRM1	6	146350685	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	1351125	146350685	24764382	45	43778										
GRM1	0	genome.wustl.edu	37	chr6	146720677	146720677	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gggtgcatgttcactcccaaGatgtacatcattattgccaa	8	10	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	146720677	146720677	G	C	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.2502	p.K834N	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	92	0	0	66	15	18.52	-	-	-	C	146720677	G	C	146720677	3	2	473	1	0	0	0	0	1	0	0	0	6847	933	33	2	2528	2	GRM1	6	146720677	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	369992	146720677	24394390	46	43779										
DLL1	0	genome.wustl.edu	37	chr6	170597503	170597503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgaggtccgtgcggccgctgCtgtgcaggtcctgggaccac	16	13	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	6	170597503	170597503	C	T	SNP	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	missense	c.494	p.S165N	0.995	pfam_DSL,smart_DSL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	90	0	0	68	18	20.93	-	-	-	T	170597503	C	T	170597503	3	4	473	1	0	0	0	0	1	0	0	0	4602	797	28	4	1709	4	DLL1	6	170597503	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	23876826	170597503	517564	47	43780										
TWISTNB	0	genome.wustl.edu	37	chr7	19748564	19748564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cggcaactctaggcaaggcaGgacgccagcctgccctacca	11	16	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	7	19748564	19748564	G	T	SNP	TWISTNB	ENST00000222567	human	ensembl	69_37n	-1	known	missense	c.76	p.L26M	0.001	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849	51	0	0	40	10	20	-	-	-	T	19748564	G	T	19748564	3	4	473	1	0	0	0	0	1	0	0	0	16881	991	35	4	956	4	TWISTNB	7	19748564	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		19748564	139390099	48	43781										
CROT	0	genome.wustl.edu	37	chr7	87011757	87011757	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tctacagattgcggcttatgCctttacatcttttggcaaaa	7	9	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	7	87011757	87011757	C	A	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	missense	c.1199	p.A400D	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	101	0	0	60	53	46.9	-	-	-	A	87011757	C	A	87011757	3	1	473	1	0	0	0	0	1	0	0	0	3924	739	26	4	1329	4	CROT	7	87011757	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	67263193	87011757	72126906	49	43782										
PILRB	0	genome.wustl.edu	37	chr7	99933732	99933732	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttttccgaacgccagcagcaGggtcagaagggaggtagtcg	15	9	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	7	99933732	99933732	G	C	SNP	PILRB	ENST00000470714	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	PILRB	HGNC	ENSG00000121716	140	0	0	117	49	29.52	-	-	-	C	99933732	G	C	99933732	1	2	473	0	1	0	0	0	0	0	0	0	12000	1015	35	4		4	PILRB	7	99933732	RNA	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	12921975	99933732	59204931	50	43783										
SLC26A5	0	genome.wustl.edu	37	chr7	103033383	103033383	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tacctgattgccgtcaacctGgtagccatgtttatttgcta	8	10	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	7	103033383	103033383	G	C	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	missense	c.1102	p.Q368E	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	110	0	0	77	24	23.76	-	-	-	C	103033383	G	C	103033383	3	2	473	1	0	0	0	0	1	0	0	0	14609	1357	47	4	1217	4	SLC26A5	7	103033383	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	3099651	103033383	56105280	51	43784										
LRRC4	0	genome.wustl.edu	37	chr7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctccagggtgttgaggctggCcaggccgttgaaggccccca	15	13	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	101	0	0	46	25	35.21	-	-	-	G	127670327	C	G	127670327	3	3	473	1	0	0	0	0	1	0	0	0	9063	739	26	4	1598	4	LRRC4	7	127670327	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	24636944	127670327	31468336	52	43785										
SLC7A2	0	genome.wustl.edu	37	chr8	17412146	17412146	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gttgcttttcaaatgtctagCtcaaatcaattccaaaacga	5	9	4	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	17412146	17412146	C	A	SNP	SLC7A2	ENST00000004531	human	ensembl	69_37n	1	known	missense	c.1253	p.A418D	1.000	pfam_AA-permease_dom,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989	95	0	0	82	40	32.79	-	-	-	A	17412146	C	A	17412146	3	1	473	1	0	0	0	0	1	0	0	0	14786	797	28	4	1279	4	SLC7A2	8	17412146	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		17412146	128951876	53	43786										
NEFM	0	genome.wustl.edu	37	chr8	24771591	24771591	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggacccggcggcgactacaaGctgtcccgctccaacgagaa	12	15	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	24771591	24771591	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	silent	c.285	p.K95	1.000	pfam_Intermed_filament_DNA-bd	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	33	0	0	29	4	12.12	-	-	-	A	24771591	G	A	24771591	2	1	473	1	0	0	0	0	0	0	0	1	10388	962	34	4		4	NEFM	8	24771591	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	7359445	24771591	121592431	54	43787										
PXDNL	0	genome.wustl.edu	37	chr8	52366254	52366254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctggtccaagtgataagaggGtgtgggtggcctgtggccat	17	7	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	52366254	52366254	G	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1074	p.H358Q	0.119	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	113	0	0	153	36	18.95	-	-	-	T	52366254	G	T	52366254	3	4	473	1	0	0	0	0	1	0	0	0	12931	1252	44	4	3373	4	PXDNL	8	52366254	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	27594663	52366254	93997768	55	43788										
RP1	0	genome.wustl.edu	37	chr8	55538327	55538327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctgacaaaaatatttctgagGctccagcttcagaagcatcc	7	11	2	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	55538327	55538327	G	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.1885	p.A629S	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	35	0	0	47	14	22.95	-	-	-	T	55538327	G	T	55538327	3	4	473	1	0	0	0	0	1	0	0	0	13618	1203	42	4	1895	4	RP1	8	55538327	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	3172073	55538327	90825695	56	43789										
CYP7A1	0	genome.wustl.edu	37	chr8	59407086	59407086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	taatactggcaggtcattcaGttctgcttgactcaaacaaa	7	9	4	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	59407086	59407086	G	T	SNP	CYP7A1	ENST00000301645	human	ensembl	69_37n	-1	known	missense	c.1018	p.L340M	0.985	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910	54	0	0	54	6	10	-	-	-	T	59407086	G	T	59407086	3	4	473	1	0	0	0	0	1	0	0	0	4227	1020	36	4	508	4	CYP7A1	8	59407086	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	3868759	59407086	86956936	57	43790										
MMP16	0	genome.wustl.edu	37	chr8	89131087	89131087	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctgctacaagaaataagtcaTttcctgtgtgaacaagaaga	8	7	1	4			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	8	89131087	89131087	T	A	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.713	p.N238I	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	82	0	0	129	26	16.77	-	-	-	A	89131087	T	A	89131087	3	1	473	1	0	0	0	0	1	0	0	0	9726	1493	52	5	1290	5	MMP16	8	89131087	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	29724001	89131087	57232935	58	43791										
FREM1	0	genome.wustl.edu	37	chr9	14857742	14857742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tggacacttcagttttgctcTcagttctagaatgtacagca	8	9	3	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	9	14857742	14857742	T	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.637	p.R213G	0.261	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	66	0	0	45	12	21.05	-	-	-	C	14857742	T	C	14857742	3	2	473	1	0	0	0	0	1	0	0	0	6093	1559	54	5	6084	5	FREM1	9	14857742	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		14857742	126355689	59	43792										
ST6GALNAC6	0	genome.wustl.edu	37	chr9	130653249	130653249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	actcagcccgctcgatctcaGggcccagcttggtgcccagc	11	17	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	9	130653249	130653249	G	A	SNP	ST6GALNAC6	ENST00000291839	human	ensembl	69_37n	-1	known	missense	c.371	p.P124L	0.009	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	59	0	0	46	17	26.98	-	-	-	A	130653249	G	A	130653249	3	1	473	1	0	0	0	0	1	0	0	0	15319	1000	35	4	642	4	ST6GALNAC6	9	130653249	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	115795507	130653249	10560182	60	43793										
MPP7	0	genome.wustl.edu	37	chr10	28409186	28409186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tggcatcagcttcgtgtttcGcttgccaccaagttgcatca	9	12	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	10	28409186	28409186	G	C	SNP	MPP7	ENST00000337532	human	ensembl	69_37n	-1	known	missense	c.824	p.A275G	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP7	HGNC	ENSG00000150054	49	0	0	38	15	28.3	-	-	-	C	28409186	G	C	28409186	3	2	473	1	0	0	0	0	1	0	0	0	9811	1087	38	3	938	3	MPP7	10	28409186	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		28409186	107125561	61	43794										
HRAS	0	genome.wustl.edu	37	chr11	533874	533874	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gcatggcgctgtactcctccTggccggcggtatccaggatg	14	13	0	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	533874	533874	T	A	SNP	HRAS	ENST00000311189	human	ensembl	69_37n	-1	known	missense	c.182	p.Q61L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	HRAS	HGNC	ENSG00000174775	62	0	0	66	13	16.46	-	-	-	A	533874	T	A	533874	3	1	473	1	0	0	0	0	1	0	0	0	7399	1580	55	5	466	5	HRAS	11	533874	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		533874	134472642	62	43795										
KRTAP5-6	0	genome.wustl.edu	37	chr11	1718781	1718781	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgttcctcaggctgtgggtcAtcctgctgccagtccagctg	12	13	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	1718781	1718781	A	G	SNP	KRTAP5-6	ENST00000382160	human	ensembl	69_37n	1	known	silent	c.306	p.S102	0.000	NULL	NULL	-	no_errors	KRTAP5-6	HGNC	ENSG00000205864	156	1	0.64	126	37	22.56	-	-	-	G	1718781	A	G	1718781	2	3	473	1	0	0	0	0	0	0	0	1	8619	204	8	5		5	KRTAP5-6	11	1718781	Silent	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	1184907	1718781	133287735	63	43796										
UBQLNL	0	genome.wustl.edu	37	chr11	5537479	5537479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cactagttggtccatctggcAttggaagtgagccaatagca	11	9	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	5537479	5537479	A	G	SNP	UBQLNL	ENST00000380184	human	ensembl	69_37n	-1	putative	missense	c.193	p.C65R	0.939	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518	82	0	0	75	27	26.47	-	-	-	G	5537479	A	G	5537479	3	3	473	1	0	0	0	0	1	0	0	0	16997	217	8	5	1238	5	UBQLNL	11	5537479	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	3818698	5537479	129469037	64	43797										
DKK3	0	genome.wustl.edu	37	chr11	11987491	11987491	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cgccctccacgggcaggggtGtgcacacagggaacagcagg	16	13	0	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	11987491	11987491	G	T	SNP	DKK3	ENST00000326932	human	ensembl	69_37n	-1	known	missense	c.695	p.T232K	1.000	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165	89	0	0	59	17	22.37	-	-	-	T	11987491	G	T	11987491	3	4	473	1	0	0	0	0	1	0	0	0	4582	1377	48	4	365	4	DKK3	11	11987491	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	6450012	11987491	123019025	65	43798										
C11orf49	0	genome.wustl.edu	37	chr11	47178757	47178757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tctggaaaacctgtgtgatcGgcacaagtacaggtgaggaa	13	7	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	47178757	47178757	G	A	SNP	C11orf49	ENST00000378615	human	ensembl	69_37n	1	known	missense	c.635	p.R212Q	1.000	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	43	0	0	53	10	15.87	-	-	-	A	47178757	G	A	47178757	3	1	473	1	0	0	0	0	1	0	0	0	1656	1116	39	1	657	1	C11orf49	11	47178757	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	35191266	47178757	87827759	66	43799										
RTN4RL2	0	genome.wustl.edu	37	chr11	57236242	57236242	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aaacctgtcatctcaatgcaGgggaagaaagaaaagggtaa	11	6	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	57236242	57236242	G	A	SNP	RTN4RL2	ENST00000533205	human	ensembl	69_37n	1	putative	splice_site	c.514-1	e3-1	0.000	-	-	-	no_errors	RTN4RL2	HGNC	ENSG00000186907	23	0	0	25	6	19.35	-	-	-	A	57236242	G	A	57236242	5	1	473	1	0	0	0	0	0	0	1	0	13818	1015	35	4		4	RTN4RL2	11	57236242	Splice_Site	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	10057485	57236242	77770274	67	43800										
CCDC87	0	genome.wustl.edu	37	chr11	66358623	66358623	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggcaggggccacaatctccaCaggaacctcttcttcatgca	9	14	4	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	66358623	66358623	C	A	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.1864	p.V622L	0.002	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	46	0	0	41	6	12.77	-	-	-	A	66358623	C	A	66358623	3	1	473	1	0	0	0	0	1	0	0	0	2889	478	17	4	689	4	CCDC87	11	66358623	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	9122381	66358623	68647893	68	43801										
CCS	0	genome.wustl.edu	37	chr11	66366699	66366699	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	acggggcggcaggcggtactCaagggcatgggcagcggcca	19	11	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	66366699	66366699	C	G	SNP	CCS	ENST00000533244	human	ensembl	69_37n	1	known	silent	c.225	p.L75	1.000	superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA	pfam_SOD_Cu_Zn_dom,pfam_HeavyMe-assoc_HMA,superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_SOD_Cu_Zn_dom	-	no_errors	CCS	HGNC	ENSG00000173992	67	0	0	47	15	24.19	-	-	-	G	66366699	C	G	66366699	2	3	473	1	0	0	0	0	0	0	0	1	2981	813	29	2		2	CCS	11	66366699	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	8076	66366699	68639817	69	43802										
FOLH1B	0	genome.wustl.edu	37	chr11	89405157	89405157	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgaaactgtgaggagctttgGaacactgaaaaaggaaggta	13	4	0	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	89405157	89405157	G	C	SNP	FOLH1B	ENST00000525540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	82	0	0	51	39	43.33	-	-	-	C	89405157	G	C	89405157	1	2	473	0	1	0	0	0	0	0	0	0	6026	1174	41	2		2	FOLH1B	11	89405157	RNA	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	23038458	89405157	45601359	70	43803										
FAT3	0	genome.wustl.edu	37	chr11	92086868	92086868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tttacaggtgttattagcacAactgaagaactggattttga	9	5	0	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	92086868	92086868	A	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.1590	p.T530	0.821	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	40	0	0	36	7	16.28	-	-	-	G	92086868	A	G	92086868	2	3	473	1	0	0	0	0	0	0	0	1	5737	117	5	5		5	FAT3	11	92086868	Silent	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	2681711	92086868	42919648	71	43804										
TRIM29	0	genome.wustl.edu	37	chr11	119999152	119999153	+	Frame_Shift_Ins	INS	-	-	A													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cacttctcagcttcatcctcINSaatctcaatgatcttgagct							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	119999152	119999153	-	A	INS	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	frame_shift_ins	c.856_855	p.E285fs	0.994:0.349	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	33	0	0	28	16	36.36	-	-	-	A	119999153	-	A	119999152	7	5	473	1	0	1	1	0	0	0	0	0	16599	835	29	0	942	0	TRIM29	11	119999152	Frame_Shift_Ins	INS	-	TCGA-B6-A400-01A-11D-A23C-09	27912284	119999152	15007364	72	43805										
ESAM	0	genome.wustl.edu	37	chr11	124628362	124628362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggaagcaccacttcccctccCtccaccgcctgcaaccggtt	7	20	0	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	11	124628362	124628362	C	A	SNP	ESAM	ENST00000278927	human	ensembl	69_37n	-1	known	missense	c.132	p.E44D	0.999	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ESAM	HGNC	ENSG00000149564	29	0	0	25	11	30.56	-	-	-	A	124628362	C	A	124628362	3	1	473	1	0	0	0	0	1	0	0	0	5284	680	24	4	1064	4	ESAM	11	124628362	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	4629210	124628362	10378154	73	43806										
CACNA1C	0	genome.wustl.edu	37	chr12	2705149	2705149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctgctgaggacccggtccagCacacctccttcaggaaccat	9	16	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	2705149	2705149	C	G	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.2773	p.H925D	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	47	0	0	55	14	20.29	-	-	-	G	2705149	C	G	2705149	3	3	473	1	0	0	0	0	1	0	0	0	2565	710	25	4	2959	4	CACNA1C	12	2705149	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		2705149	131146746	74	43807										
LRP1	0	genome.wustl.edu	37	chr12	57600403	57600403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgtccatgtcaaggctggccGtgtctattggaccaactggc	12	11	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	57600403	57600403	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.11738	p.R3913H	0.994	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	111	0	0	73	25	25.25	-	-	-	A	57600403	G	A	57600403	3	1	473	1	0	0	0	0	1	0	0	0	9017	1145	40	1	12040	1	LRP1	12	57600403	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	54895254	57600403	76251492	75	43808										
CPSF6	0	genome.wustl.edu	37	chr12	69656294	69656294	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	caccgggatcgtgaccgagaCcgtgaccgagagcgtgaccg	15	13	0	5			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	69656294	69656294	C	G	SNP	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	missense	c.1722	p.D574E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	33	0	0	31	4	10.53	-	-	-	G	69656294	C	G	69656294	3	3	473	1	0	0	0	0	1	0	0	0	3859	506	18	4	1645	4	CPSF6	12	69656294	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	12055891	69656294	64195601	76	43809										
PTPRB	0	genome.wustl.edu	37	chr12	70925902	70925902	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tctttggagtctaactgctgGaggattcggtccaatgcaat	11	8	2	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	70925902	70925902	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.6417	p.L2139	0.766	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	45	0	0	25	39	60.94	-	-	-	A	70925902	G	A	70925902	2	1	473	1	0	0	0	0	0	0	0	1	12879	1161	41	2		2	PTPRB	12	70925902	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	1269608	70925902	62925993	77	43810										
LGR5	0	genome.wustl.edu	37	chr12	71978452	71978452	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctcccagttccgtgccatcaCcagcttatccagtgactgag	8	15	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	71978452	71978452	C	A	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	missense	c.2662	p.P888T	0.070	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	41	0	0	37	22	37.29	-	-	-	A	71978452	C	A	71978452	3	1	473	1	0	0	0	0	1	0	0	0	8812	507	18	4	2732	4	LGR5	12	71978452	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	1052550	71978452	61873443	78	43811										
TRHDE	0	genome.wustl.edu	37	chr12	72680617	72680617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gtggaaacttccgtgtttgaGgaagatggatgggttacgga	16	4	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	72680617	72680617	G	A	SNP	TRHDE	ENST00000547300	human	ensembl	69_37n	1	novel	missense	c.232	p.G78R	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_start_codon:pseudogene:no_stop_codon	TRHDE	HGNC	ENSG00000072657	40	0	0	21	24	53.33	-	-	-	A	72680617	G	A	72680617	3	1	473	1	0	0	0	0	1	0	0	0	16575	991	35	4	942	4	TRHDE	12	72680617	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	702165	72680617	61171278	79	43812										
UBE3B	0	genome.wustl.edu	37	chr12	109967700	109967700	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccttgttggcaacagaattaGctacatccatctgatggcac	8	11	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	12	109967700	109967700	G	C	SNP	UBE3B	ENST00000449510	human	ensembl	69_37n	1	known	splice_site	c.2127-1	e19-1	1.000	-	-	-	no_errors	UBE3B	HGNC	ENSG00000151148	49	0	0	32	12	27.27	-	-	-	C	109967700	G	C	109967700	5	2	473	1	0	0	0	0	0	0	1	0	16977	971	34	4	2723	4	UBE3B	12	109967700	Splice_Site	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	37287083	109967700	23884195	80	43813										
RTL1	0	genome.wustl.edu	37	chr14	101350112	101350112	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tccggctgagggacccggaaTagatagtgcctgatctcctc	12	12	1	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	14	101350112	101350112	T	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	0.997	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	37	0	0	33	16	32.65	-	-	-	A	101350112	T	A	101350112	2	1	473	1	0	0	0	0	0	0	0	1	13810	1393	49	5		5	RTL1	14	101350112	Silent	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		101350112	5999428	81	43814										
ATP10A	0	genome.wustl.edu	37	chr15	26026270	26026270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gtcggggtcactggaggagaGcagcagaatgtccgcaggga	18	8	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	15	26026270	26026270	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.550	p.L184F	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	102	0	0	62	35	36.08	-	-	-	A	26026270	G	A	26026270	3	1	473	1	0	0	0	0	1	0	0	0	1120	971	34	4	4029	4	ATP10A	15	26026270	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		26026270	76505122	82	43815										
JMJD7-PLA2G4B	0	genome.wustl.edu	37	chr15	42127178	42127178	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	attcctctagagccacagtgGgctccacagaggtgagtgtg	13	10	1	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	15	42127178	42127178	G	C	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	69_37n	1	known	missense	c.229	p.G77R	1.000	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_JmjC_dom,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970	65	0	0	43	18	29.03	-	-	-	C	42127178	G	C	42127178	3	2	473	1	0	0	0	0	1	0	0	0	8009	1232	43	4	239	4	JMJD7-PLA2G4B	15	42127178	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	16100908	42127178	60404214	83	43816										
TBC1D21	0	genome.wustl.edu	37	chr15	74177162	74177162	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tatgacaaagatcccctgggCaacgtcctcatcgacaagaa	8	12	1	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	15	74177162	74177162	C	A	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	silent	c.408	p.G136	0.999	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	64	0	0	38	19	33.33	-	-	-	A	74177162	C	A	74177162	2	1	473	1	0	0	0	0	0	0	0	1	15702	697	25	4		4	TBC1D21	15	74177162	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	32049984	74177162	28354230	84	43817										
PRC1	0	genome.wustl.edu	37	chr15	91537757	91537757	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cactccgcgtagccgctccgCgagccgttgagccccgcaaa	11	18	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	15	91537757	91537757	C	G	SNP	PRC1	ENST00000555745	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	PRC1	HGNC	ENSG00000198901	101	0	0	59	33	35.48	-	-	-	G	91537757	C	G	91537757	1	3	473	0	1	0	0	0	0	0	0	0	12527	783	27	3		3	PRC1	15	91537757	RNA	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	17360595	91537757	10993635	85	43818										
CASKIN1	0	genome.wustl.edu	37	chr16	2239096	2239096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gtgccgttggggtcggtggcGtctcccggccggggctccag	19	13	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	16	2239096	2239096	G	T	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	missense	c.549	p.D183E	0.980	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	77	0	0	65	10	13.33	-	-	-	T	2239096	G	T	2239096	3	4	473	1	0	0	0	0	1	0	0	0	2691	1136	40	3	3806	3	CASKIN1	16	2239096	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09		2239096	88115657	86	43819										
CLUAP1	0	genome.wustl.edu	37	chr16	3580649	3580649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aaggcggctgcccaagccacAgacagccatggagatgctca	12	13	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	16	3580649	3580649	A	C	SNP	CLUAP1	ENST00000576634	human	ensembl	69_37n	1	known	missense	c.1010	p.Q337P	0.317	NULL	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351	24	0	0	38	9	19.15	-	-	-	C	3580649	A	C	3580649	3	2	473	1	0	0	0	0	1	0	0	0	3599	188	7	5	1048	5	CLUAP1	16	3580649	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	1341553	3580649	86774104	87	43820										
FAM65A	0	genome.wustl.edu	37	chr16	67578919	67578919	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctgggaccagtgcacagagaGactcagctgcttcctctgcc	11	14	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	16	67578919	67578919	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.2990	p.R997K	0.986	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	64	0	0	62	25	28.74	-	-	-	A	67578919	G	A	67578919	3	1	473	1	0	0	0	0	1	0	0	0	5644	942	33	2	2992	2	FAM65A	16	67578919	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	63998270	67578919	22775834	88	43821										
TAF1C	0	genome.wustl.edu	37	chr16	84214789	84214789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	caacagaccacagcccggcgGgccctggaagataaacacag	11	14	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	16	84214789	84214789	G	A	SNP	TAF1C	ENST00000378541	human	ensembl	69_37n	-1	known	missense	c.1246	p.P416S	0.961	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168	58	0	0	47	6	11.32	-	-	-	A	84214789	G	A	84214789	3	1	473	1	0	0	0	0	1	0	0	0	15613	1232	43	4	1379	4	TAF1C	16	84214789	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	16635870	84214789	6139964	89	43822										
TP53	0	genome.wustl.edu	37	chr17	7579363	7579364	+	Frame_Shift_Ins	INS	-	-	C													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gcaagaagcccagacggaaaINSccgtagctgccctggtaggt							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	7579363	7579364	-	C	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.324_323	p.R110fs	0.873:0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	79	0	0	36	41	53.25	-	-	-	C	7579364	-	C	7579363	7	5	473	1	0	1	1	0	0	0	0	0	16477	30	2	0	978	0	TP53	17	7579363	Frame_Shift_Ins	INS	-	TCGA-B6-A400-01A-11D-A23C-09		7579363	73615847	90	43823										
MYH8	0	genome.wustl.edu	37	chr17	10300034	10300034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tctgcttccattctgataggAcctgaaaagcaataaatcat	6	9	3	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	10300034	10300034	A	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4364	p.V1455D	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	37	0	0	34	10	22.73	-	-	-	T	10300034	A	T	10300034	3	4	473	1	0	0	0	0	1	0	0	0	10113	289	10	5	1485	5	MYH8	17	10300034	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	2720671	10300034	70895176	91	43824										
ZNF624	0	genome.wustl.edu	37	chr17	16525927	16525927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aacccctcctgaaggcttttCcacagacatcacacttatag	5	14	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	16525927	16525927	C	T	SNP	ZNF624	ENST00000311331	human	ensembl	69_37n	-1	known	missense	c.2273	p.G758E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566	34	0	0	49	12	19.67	-	-	-	T	16525927	C	T	16525927	3	4	473	1	0	0	0	0	1	0	0	0	18144	855	30	2	328	2	ZNF624	17	16525927	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	6225893	16525927	64669283	92	43825										
GRB7	0	genome.wustl.edu	37	chr17	37899449	37899449	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccagagcggggtttggaggaCcacgagtccgtggtggaagt	18	8	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	37899449	37899449	C	A	SNP	GRB7	ENST00000445327	human	ensembl	69_37n	1	known	missense	c.549	p.D183E	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738	60	0	0	54	10	15.62	-	-	-	A	37899449	C	A	37899449	3	1	473	1	0	0	0	0	1	0	0	0	6810	506	18	4	494	4	GRB7	17	37899449	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	21373522	37899449	43295761	93	43826										
FZD2	0	genome.wustl.edu	37	chr17	42636406	42636408	+	In_Frame_Del	DEL	CAA	CAA	-													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atcatgaagcacgacggcacCaagaccgaaaagctggagcg							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	42636406	42636408	CAA	-	DEL	FZD2	ENST00000315323	human	ensembl	69_37n	1	known	in_frame_del	c.1350_1352	p.K451in_frame_del	1.000:1.000:1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD2	HGNC	ENSG00000180340	48	0	0	41	10	18.87	-	-	-	-	42636408	CAA	-	42636406	7	5	473	1	0	1	0	1	0	0	0	0	6179	581	21	0	1352	0	FZD2	17	42636406	In_Frame_Del	DEL	CAA	TCGA-B6-A400-01A-11D-A23C-09	4736957	42636406	38558804	94	43827	353	2								
FZD2	0	genome.wustl.edu	37	chr17	42636411	42636411	+	Frame_Shift_Del	DEL	C	C	-													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gaagcacgacggcaccaagaCcgaaaagctggagcggctca							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	42636411	42636411	C	-	DEL	FZD2	ENST00000315323	human	ensembl	69_37n	1	known	frame_shift_del	c.1355	p.E453fs	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD2	HGNC	ENSG00000180340	52	0	0	41	11	20.75	-	-	-	-	42636411	C	-	42636411	7	5	473	1	0	1	0	1	0	0	0	0	6179	507	18	0	1357	0	FZD2	17	42636411	Frame_Shift_Del	DEL	C	TCGA-B6-A400-01A-11D-A23C-09	5	42636411	38558799	95	43828	353	2								
MAPT	0	genome.wustl.edu	37	chr17	44055647	44055647	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgtgactttcctgaatgtttAagggaaaatgcccgaaggta	11	6	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	44055647	44055647	A	T	SNP	MAPT	ENST00000576518	human	ensembl	69_37n	1	putative	nonsense	c.7	p.K3*	0.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	29	0	0	33	4	10.81	-	-	-	T	44055647	A	T	44055647	4	4	473	1	0	0	0	0	0	1	0	0	9368	377	13	5		5	MAPT	17	44055647	Nonsense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	1419236	44055647	37139563	96	43829										
DNAH17	0	genome.wustl.edu	37	chr17	76471536	76471536	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cctgcagatgtgagccacggCgtcctcaaacagcacctgca	10	15	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	17	76471536	76471536	C	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.8293	p.A2765P	0.682	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	42	0	0	87	20	18.69	-	-	-	G	76471536	C	G	76471536	3	3	473	1	0	0	0	0	1	0	0	0	4637	768	27	3	5165	3	DNAH17	17	76471536	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	32415889	76471536	4723674	97	43830										
SKA1	0	genome.wustl.edu	37	chr18	47917634	47917634	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cagaaatctctatcacagatTtattgatgaagaaacgaagg	8	6	2	5			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	18	47917634	47917634	T	G	SNP	SKA1	ENST00000285116	human	ensembl	69_37n	1	known	missense	c.590	p.F197C	1.000	pfam_DUF1395	pfam_DUF1395	-	no_errors	SKA1	HGNC	ENSG00000154839	39	0	0	38	10	20.83	-	-	-	G	47917634	T	G	47917634	3	3	473	1	0	0	0	0	1	0	0	0	14441	1841	64	5	608	5	SKA1	18	47917634	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		47917634	30159614	98	43831										
WDR7	0	genome.wustl.edu	37	chr18	54348616	54348616	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ttagcttgcacacatactggCatacaggttagtttctattt	7	8	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	18	54348616	54348616	C	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	silent	c.339	p.G113	1.000	superfamily_Quinonprotein_ADH-like	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	81	0	0	46	47	50.54	-	-	-	T	54348616	C	T	54348616	2	4	473	1	0	0	0	0	0	0	0	1	17417	697	25	4		4	WDR7	18	54348616	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	6430982	54348616	23728632	99	43832										
ZNF236	0	genome.wustl.edu	37	chr18	74583726	74583726	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	acgtattcgtgtccgcactgTggaaagacgtttcaaaagcc	10	10	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	18	74583726	74583726	T	C	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	silent	c.606	p.C202	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	50	0	0	51	6	10.53	-	-	-	C	74583726	T	C	74583726	2	2	473	1	0	0	0	0	0	0	0	1	17885	1702	59	5		5	ZNF236	18	74583726	Silent	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	20235110	74583726	3493522	100	43833										
PLIN5	0	genome.wustl.edu	37	chr19	4529581	4529582	+	Frame_Shift_Del	DEL	TA	TA	-													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tatacatatatacttatacgTatatatacatatatacacta							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	4529581	4529582	TA	-	DEL	PLIN5	ENST00000588887	human	ensembl	69_37n	-1	putative	frame_shift_del	c.357_356	p.I119fs	0.001:0.002	NULL	pfam_Perilipin	-	no_stop_codon	PLIN5	HGNC	ENSG00000214456	27	0	0	15	3	16.67	-	-	-	-	4529582	TA	-	4529581	7	5	473	1	0	1	0	1	0	0	0	0	12167	1653	57	0		0	PLIN5	19	4529581	Frame_Shift_Del	DEL	TA	TCGA-B6-A400-01A-11D-A23C-09		4529581	54599402	101	43834										
UHRF1	0	genome.wustl.edu	37	chr19	4930847	4930847	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tgcagctccacgtccaggccGgcgctggaggaggacgtcat	15	13	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	4930847	4930847	G	A	SNP	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	104	0	0	63	11	14.86	-	-	-	A	4930847	G	A	4930847	1	1	473	0	1	0	0	0	0	0	0	0	17064	1103	39	1		1	UHRF1	19	4930847	RNA	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	401266	4930847	54198136	102	43835										
KDM4B	0	genome.wustl.edu	37	chr19	5150386	5150386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	caggtggagtttgaggacggGtcccagctgacggtgaagcg	18	8	0	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	5150386	5150386	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	silent	c.3039	p.G1013	0.947	smart_Tudor	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	109	0	0	68	31	31.31	-	-	-	A	5150386	G	A	5150386	2	1	473	1	0	0	0	0	0	0	0	1	8183	1248	44	4		4	KDM4B	19	5150386	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	219539	5150386	53978597	103	43836										
EVI5L	0	genome.wustl.edu	37	chr19	7928149	7928149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gcgagctcaaggaccagatcGaggagctgaaggccgaggtg	17	9	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	7928149	7928149	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	69_37n	1	known	missense	c.2122	p.E708K	0.997	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459	14	0	0	9	4	30.77	-	-	-	A	7928149	G	A	7928149	3	1	473	1	0	0	0	0	1	0	0	0	5327	1059	37	1	2192	1	EVI5L	19	7928149	Missense_Mutation	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	2777763	7928149	51200834	104	43837										
NWD1	0	genome.wustl.edu	37	chr19	16923622	16923622	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	acaagtatgtgtacgtgggcTtaaaggatcgctctatactt	10	7	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	16923622	16923622	T	A	SNP	NWD1	ENST00000339803	human	ensembl	69_37n	1	known	missense	c.3949	p.L1317I	0.990	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	167	0	0	115	46	28.57	-	-	-	A	16923622	T	A	16923622	3	1	473	1	0	0	0	0	1	0	0	0	10854	1606	56	5	4007	5	NWD1	19	16923622	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	8995473	16923622	42205361	105	43838										
ACTN4	0	genome.wustl.edu	37	chr19	39220042	39220042	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctcgactacaagtccttctcCacggccttgtatggcgagag	10	13	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	39220042	39220042	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	silent	c.2706	p.S902	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	36	0	0	102	23	18.4	-	-	-	T	39220042	C	T	39220042	2	4	473	1	0	0	0	0	0	0	0	1	207	581	21	4		4	ACTN4	19	39220042	Silent	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	22296420	39220042	19908941	106	43839										
CAPN12	0	genome.wustl.edu	37	chr19	39234799	39234799	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggtgaccctcccactgctggAtgccatctggacactggcct	11	15	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	39234799	39234799	A	T	SNP	CAPN12	ENST00000328867	human	ensembl	69_37n	-1	known	missense	c.7	p.S3T	0.022	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472	48	0	0	39	60	60.61	-	-	-	T	39234799	A	T	39234799	3	4	473	1	0	0	0	0	1	0	0	0	2650	333	12	5	2236	5	CAPN12	19	39234799	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	14757	39234799	19894184	107	43840										
CBLC	0	genome.wustl.edu	37	chr19	45284307	45284307	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggagggaaagttgcggagccCggtgagtaagcccttgtcct	16	9	0	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	45284307	45284307	C	G	SNP	CBLC	ENST00000270279	human	ensembl	69_37n	1	known	missense	c.499	p.R167G	0.983	pfam_Adaptor_Cbl_EF_hand-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273	49	0	0	47	39	45.35	-	-	-	G	45284307	C	G	45284307	3	3	473	1	0	0	0	0	1	0	0	0	2727	666	23	3	505	3	CBLC	19	45284307	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	6049508	45284307	13844676	108	43841										
DHX34	0	genome.wustl.edu	37	chr19	47879196	47879196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	cccaggatgtgaagttcaagCttcggcatgacctggcgcag	13	11	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	47879196	47879196	C	T	SNP	DHX34	ENST00000328771	human	ensembl	69_37n	1	known	missense	c.2323	p.L775F	1.000	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815	51	0	0	51	11	17.74	-	-	-	T	47879196	C	T	47879196	3	4	473	1	0	0	0	0	1	0	0	0	4543	797	28	4	2361	4	DHX34	19	47879196	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	2594889	47879196	11249787	109	43842										
CCDC155	0	genome.wustl.edu	37	chr19	49913126	49913126	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccatctgaagccccagctggGggacaggtgagcacaggaaa	14	11	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	49913126	49913126	G	T	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	silent	c.1263	p.G421	0.000	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	41	0	0	41	8	16	-	-	-	T	49913126	G	T	49913126	2	4	473	1	0	0	0	0	0	0	0	1	2814	1219	43	4		4	CCDC155	19	49913126	Silent	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	2033930	49913126	9215857	110	43843										
NLRP2	0	genome.wustl.edu	37	chr19	55481613	55481613	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ggcgagcctccaggtctttgAaaagatgcaccgaatggatc	12	10	1	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	55481613	55481613	A	T	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	missense	c.230	p.E77V	0.002	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	43	0	0	30	7	18.92	-	-	-	T	55481613	A	T	55481613	3	4	473	1	0	0	0	0	1	0	0	0	10549	246	9	5	232	5	NLRP2	19	55481613	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	5568487	55481613	3647370	111	43844										
ZNF135	0	genome.wustl.edu	37	chr19	58571336	58571336	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ctcacctcccctttcccacaGagcagggccagccgttcctg	8	19	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	58571336	58571336	G	A	SNP	ZNF135	ENST00000313434	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	0.980	-	-	-	no_errors	ZNF135	HGNC	ENSG00000176293	185	0	0	154	41	21.03	-	-	-	A	58571336	G	A	58571336	5	1	473	1	0	0	0	0	0	0	1	0	17821	957	33	2		2	ZNF135	19	58571336	Splice_Site	SNP	G	TCGA-B6-A400-01A-11D-A23C-09	3089723	58571336	557647	112	43845										
ZNF324	0	genome.wustl.edu	37	chr19	58981143	58981144	+	In_Frame_Ins	INS	-	-	ACT													0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	atccaactggagcgtggcgaINSggagccctgggttcccagtg							TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	19	58981143	58981144	-	ACT	INS	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	in_frame_ins	c.170_171	p.58in_frame_insL	0.853:0.901	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	64	0	0	63	7	10	-	-	-	ACT	58981144	-	ACT	58981143	7	5	473	1	0	1	1	0	0	0	0	0	17940	304	11	0	176	0	ZNF324	19	58981143	In_Frame_Ins	INS	-	TCGA-B6-A400-01A-11D-A23C-09	409807	58981143	147840	113	43846										
SLC12A5	0	genome.wustl.edu	37	chr20	44681599	44681599	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tccttggcctccctcagagcTggtccgggaaaccacagctg	11	15	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	20	44681599	44681599	T	A	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2450	p.L817Q	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	94	0	0	48	36	42.86	-	-	-	A	44681599	T	A	44681599	3	1	473	1	0	0	0	0	1	0	0	0	14475	1580	55	5	2580	5	SLC12A5	20	44681599	Missense_Mutation	SNP	T	TCGA-B6-A400-01A-11D-A23C-09		44681599	18343921	114	43847										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45993819	45993819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tggtctgcaccccagtgagcCgtgtgtccagcccctgctgc	12	16	1	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	21	45993819	45993819	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	missense	c.184	p.R62C	0.975	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	39	0	0	33	5	13.16	-	-	-	T	45993819	C	T	45993819	3	4	473	1	0	0	0	0	1	0	0	0	8564	652	23	1	186	1	KRTAP10-4	21	45993819	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		45993819	2136076	115	43848										
MYO18B	0	genome.wustl.edu	37	chr22	26422417	26422417	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tcttcttggcacaggataaaCgaagaggctggggacactga	13	8	2	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	22	26422417	26422417	C	G	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.6477	p.N2159K	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	29	0	0	47	12	20.34	-	-	-	G	26422417	C	G	26422417	3	3	473	1	0	0	0	0	1	0	0	0	10138	535	19	3	6643	3	MYO18B	22	26422417	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09		26422417	24882149	116	43849										
GYG2	0	genome.wustl.edu	37	chrX	2795452	2795452	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	gctgttaatttttcagcctcAtttaacaaaaaataagaatc	4	7	2	1			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	2795452	2795452	A	C	SNP	GYG2	ENST00000453106	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GYG2	HGNC	ENSG00000056998	73	0	0	46	27	36.99	-	-	-	C	2795452	A	C	2795452	1	2	473	0	1	0	0	0	0	0	0	0	6957	232	8	5		5	GYG2	23	2795452	RNA	SNP	A	TCGA-B6-A400-01A-11D-A23C-09		2795452	152475108	117	43850										
AMELX	0	genome.wustl.edu	37	chrX	11316684	11316684	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	ccagtacccttcctatggttAcgagcccatgggtggatggc	12	12	0	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	11316684	11316684	A	T	SNP	AMELX	ENST00000380712	human	ensembl	69_37n	1	known	missense	c.203	p.Y68F	1.000	pfam_Amelogenin,smart_Amelogenin	pfam_Amelogenin,smart_Amelogenin,prints_Amelogenin	-	no_errors	AMELX	HGNC	ENSG00000125363	109	0	0	120	29	19.46	-	-	-	T	11316684	A	T	11316684	3	4	473	1	0	0	0	0	1	0	0	0	569	391	14	5	221	5	AMELX	23	11316684	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	8521232	11316684	143953876	118	43851										
SH3KBP1	0	genome.wustl.edu	37	chrX	19758883	19758883	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tactaaggacatacttctttCcatcctttgttaacagtttc	4	10	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	19758883	19758883	C	A	SNP	SH3KBP1	ENST00000431164	human	ensembl	69_37n	-1	known	nonsense	c.4	p.E2*	0.018	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_stop_codon:bad_bp_length_for_coding_region	SH3KBP1	HGNC	ENSG00000147010	39	0	0	101	19	15.83	-	-	-	A	19758883	C	A	19758883	4	1	473	1	0	0	0	0	0	1	0	0	14344	870	30	2		2	SH3KBP1	23	19758883	Nonsense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	8442199	19758883	135511677	119	43852										
PHEX	0	genome.wustl.edu	37	chrX	22132593	22132593	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	caggtaatccaggggaccacAactttgctgcctcaatggga	11	11	1	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	22132593	22132593	A	C	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	silent	c.1191	p.T397	0.990	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	102	0	0	73	26	26.26	-	-	-	C	22132593	A	C	22132593	2	2	473	1	0	0	0	0	0	0	0	1	11893	117	5	5		5	PHEX	23	22132593	Silent	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	2373710	22132593	133137967	120	43853										
RPGR	0	genome.wustl.edu	37	chrX	38145735	38145735	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tcctcctcttccccctccccTtcctcctcttccccctcacc	0	27	3	0			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	38145735	38145735	T	C	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	silent	c.2517	p.E839	0.005	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	9	0	0	14	6	30	-	-	-	C	38145735	T	C	38145735	2	2	473	1	0	0	0	0	0	0	0	1	13634	1606	56	5		5	RPGR	23	38145735	Silent	SNP	T	TCGA-B6-A400-01A-11D-A23C-09	16013142	38145735	117124825	121	43854										
MAOB	0	genome.wustl.edu	37	chrX	43656376	43656376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	aagaatggatgggtacctgtCctccatttgttgtcgagatg	12	7	0	2			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	43656376	43656376	C	A	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	missense	c.614	p.G205V	1.000	pfam_Amino_oxidase,prints_Flavin_amine_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	55	0	0	105	23	17.97	-	-	-	A	43656376	C	A	43656376	3	1	473	1	0	0	0	0	1	0	0	0	9297	855	30	2	988	2	MAOB	23	43656376	Missense_Mutation	SNP	C	TCGA-B6-A400-01A-11D-A23C-09	5510641	43656376	111614184	122	43855										
UTP14A	0	genome.wustl.edu	37	chrX	129042696	129042696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0737704918032787	9	0.656262759423648	1.20374707259953	1.24833029751063	1.17030965391621	1	1	0	tctgaaggtgtcagagttcaAtgtcagttctgaaggtaagt	12	5	5	3			TCGA-B6-A400-01A-11D-A23C-09	TCGA-B6-A400-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c4a3f5f1-86c6-444d-96ed-4865a65e1803	14691103-0cf4-47d2-ad99-f72c5f3de295	X	129042696	129042696	A	G	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	missense	c.224	p.N75S	0.820	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	78	0	0	41	32	43.84	-	-	-	G	129042696	A	G	129042696	3	3	473	1	0	0	0	0	1	0	0	0	17192	101	4	5	238	5	UTP14A	23	129042696	Missense_Mutation	SNP	A	TCGA-B6-A400-01A-11D-A23C-09	85386320	129042696	26227864	123	43856										
C1orf123	0	genome.wustl.edu	37	chr1	53685853	53685853	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	tgcctggttaaatattttctCatactgccggagagaaggct	10	8	1	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	1	53685853	53685853	C	A	SNP	C1orf123	ENST00000474227	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	C1orf123	HGNC	ENSG00000162384	121	0	0	83	14	14.43	-	-	-	A	53685853	C	A	53685853	1	1	474	0	1	0	0	0	0	0	0	0	2010	841	29	2		2	C1orf123	1	53685853	RNA	SNP	C	TCGA-B6-A401-01A-11D-A23C-09		53685853	195564768	1	43857										
CLK1	0	genome.wustl.edu	37	chr2	201718659	201718659	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	cagcgtcttgaaacatatctGccggcagaactgtgttcatc	9	11	3	2			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	2	201718659	201718659	G	T	SNP	CLK1	ENST00000321356	human	ensembl	69_37n	-1	known	silent	c.1278	p.G426	0.826	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK1	HGNC	ENSG00000013441	40	0	0	40	5	11.11	-	-	-	T	201718659	G	T	201718659	2	4	474	1	0	0	0	0	0	0	0	1	3566	1306	46	4		4	CLK1	2	201718659	Silent	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		201718659	41480714	2	43858										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	28	21	42.86	-	-	-	A	178921553	T	A	178921553	3	1	474	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-B6-A401-01A-11D-A23C-09		178921553	19100877	3	43859										
KCNK5	0	genome.wustl.edu	37	chr6	39159450	39159450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	ccttccagttgacaaaaaggGacagccaggccagccccaag	10	14	0	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	6	39159450	39159450	G	A	SNP	KCNK5	ENST00000359534	human	ensembl	69_37n	-1	known	missense	c.716	p.S239F	1.000	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TASK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626	44	0	0	26	6	18.75	-	-	-	A	39159450	G	A	39159450	3	1	474	1	0	0	0	0	1	0	0	0	8123	1174	41	2	787	2	KCNK5	6	39159450	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		39159450	131955617	4	43860										
TMEM30A	0	genome.wustl.edu	37	chr6	75965874	75965874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	atatttatgattaattactaGcagtacaactcccagaagga	6	7	0	2			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	6	75965874	75965874	G	T	SNP	TMEM30A	ENST00000230461	human	ensembl	69_37n	-1	known	missense	c.1030	p.L344I	1.000	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	-	no_errors	TMEM30A	HGNC	ENSG00000112697	42	0	0	25	3	10.71	-	-	-	T	75965874	G	T	75965874	3	4	474	1	0	0	0	0	1	0	0	0	16248	962	34	4	59	4	TMEM30A	6	75965874	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09	36806424	75965874	95149193	5	43861										
MEPCE	0	genome.wustl.edu	37	chr7	100030663	100030663	+	Frame_Shift_Del	DEL	G	G	-													0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	gggagacgagggcctgaagcGcatgtttcgccggatctacc							TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	7	100030663	100030663	G	-	DEL	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	frame_shift_del	c.1793	p.R598fs	1.000	pfam_Bin3	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	44	0	0	39	8	16.67	-	-	-	-	100030663	G	-	100030663	7	5	474	1	0	1	0	1	0	0	0	0	9548	1087	38	0	1799	0	MEPCE	7	100030663	Frame_Shift_Del	DEL	G	TCGA-B6-A401-01A-11D-A23C-09		100030663	59108000	6	43862										
IFNA21	0	genome.wustl.edu	37	chr9	21166406	21166406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	cttgagccttctggaactggTtgccatcaaactcctcctgg	9	13	2	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	9	21166406	21166406	T	G	SNP	IFNA21	ENST00000380225	human	ensembl	69_37n	-1	known	missense	c.206	p.N69T	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA21	HGNC	ENSG00000137080	188	0	0	92	43	31.85	-	-	-	G	21166406	T	G	21166406	3	3	474	1	0	0	0	0	1	0	0	0	7592	1725	60	5	367	5	IFNA21	9	21166406	Missense_Mutation	SNP	T	TCGA-B6-A401-01A-11D-A23C-09		21166406	120047025	7	43863										
CEP57	0	genome.wustl.edu	37	chr11	95564204	95564204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	gtatagctggagaaacagaaGttagagaagcagaagaagga	14	3	0	5			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	11	95564204	95564204	G	T	SNP	CEP57	ENST00000325542	human	ensembl	69_37n	1	known	missense	c.1287	p.K429N	0.919	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	33	0	0	35	4	10.26	-	-	-	T	95564204	G	T	95564204	3	4	474	1	0	0	0	0	1	0	0	0	3285	1020	36	4	1329	4	CEP57	11	95564204	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		95564204	39442312	8	43864										
R3HDM2	0	genome.wustl.edu	37	chr12	57674194	57674194	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	ttgctgaggcgtgggtgggaGagcaggaagttgctgctgct	19	6	0	2			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	12	57674194	57674194	G	C	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.1249	p.L417V	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	46	0	0	41	7	14.58	-	-	-	C	57674194	G	C	57674194	3	2	474	1	0	0	0	0	1	0	0	0	12971	942	33	2	1725	2	R3HDM2	12	57674194	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		57674194	76177701	9	43865										
PAX9	0	genome.wustl.edu	37	chr14	37135796	37135796	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	agccctggagcaggaagccaAgtacggtcaggtgaggaggc	17	9	1	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	14	37135796	37135796	A	G	SNP	PAX9	ENST00000361487	human	ensembl	69_37n	1	known	missense	c.761	p.K254R	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807	99	0	0	58	19	24.68	-	-	-	G	37135796	A	G	37135796	3	3	474	1	0	0	0	0	1	0	0	0	11559	72	3	5	771	5	PAX9	14	37135796	Missense_Mutation	SNP	A	TCGA-B6-A401-01A-11D-A23C-09		37135796	70213744	10	43866										
DCAF5	0	genome.wustl.edu	37	chr14	69521489	69521489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	cttggttgaatctctagcgtGgaagtgctccgctcagggga	14	9	2	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	14	69521489	69521489	G	A	SNP	DCAF5	ENST00000341516	human	ensembl	69_37n	-1	known	silent	c.1914	p.S638	0.411	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	54	0	0	41	7	14.58	-	-	-	A	69521489	G	A	69521489	2	1	474	1	0	0	0	0	0	0	0	1	4305	1335	47	4		4	DCAF5	14	69521489	Silent	SNP	G	TCGA-B6-A401-01A-11D-A23C-09	32385693	69521489	37828051	11	43867										
ZNRF1	0	genome.wustl.edu	37	chr16	75033986	75033986	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	gcacccaggtggttcagctcGcatagtggtgagtccgcggg	16	11	1	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	16	75033986	75033986	G	A	SNP	ZNRF1	ENST00000320619	human	ensembl	69_37n	1	known	silent	c.417	p.S139	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF1	HGNC	ENSG00000186187	74	0	0	26	24	48	-	-	-	A	75033986	G	A	75033986	2	1	474	1	0	0	0	0	0	0	0	1	18304	1074	38	1		1	ZNRF1	16	75033986	Silent	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		75033986	15320767	12	43868										
CDH15	0	genome.wustl.edu	37	chr16	89256807	89256807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	cccccgtgttccaggagaacCcacttcggaccagcctagca	9	17	0	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	16	89256807	89256807	C	T	SNP	CDH15	ENST00000289746	human	ensembl	69_37n	1	known	missense	c.1135	p.P379S	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	93	0	0	71	18	20	-	-	-	T	89256807	C	T	89256807	3	4	474	1	0	0	0	0	1	0	0	0	3129	623	22	4	1165	4	CDH15	16	89256807	Missense_Mutation	SNP	C	TCGA-B6-A401-01A-11D-A23C-09	14222821	89256807	1097946	13	43869										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	36	0	0	16	24	60	-	-	-	T	7578406	C	T	7578406	3	4	474	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-B6-A401-01A-11D-A23C-09		7578406	73616804	14	43870										
GCDH	0	genome.wustl.edu	37	chr19	13010643	13010643	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	tcttgagaggagagtgacatGgaagcaactccgtctgctgc	13	9	2	3			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	19	13010643	13010643	G	T	SNP	GCDH	ENST00000588242	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCDH	HGNC	ENSG00000105607	30	0	0	20	3	13.04	-	-	-	T	13010643	G	T	13010643	1	4	474	0	1	0	0	0	0	0	0	0	6337	1363	47	4		4	GCDH	19	13010643	RNA	SNP	G	TCGA-B6-A401-01A-11D-A23C-09		13010643	46118340	15	43871										
CIC	0	genome.wustl.edu	37	chr19	42793200	42793200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	agcggggtacacagcctggaCggcggagaagtagacagtca	16	9	1	2			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	19	42793200	42793200	C	T	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	silent	c.1092	p.D364	0.423	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	19	0	0	22	14	38.89	-	-	-	T	42793200	C	T	42793200	2	4	474	1	0	0	0	0	0	0	0	1	3453	535	19	1		1	CIC	19	42793200	Silent	SNP	C	TCGA-B6-A401-01A-11D-A23C-09	29782557	42793200	16335783	16	43872										
TPRX1	0	genome.wustl.edu	37	chr19	48306222	48306222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	ccgagctagtttggcgcggcGattcttgaaccacacctggg	13	12	1	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	19	48306222	48306222	G	A	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.337	p.R113C	0.665	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	90	0	0	65	9	12.16	-	-	-	A	48306222	G	A	48306222	3	1	474	1	0	0	0	0	1	0	0	0	16518	1058	37	1	1193	1	TPRX1	19	48306222	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09	5513022	48306222	10822761	17	43873										
SHROOM2	0	genome.wustl.edu	37	chrX	9864212	9864212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	cggaggccggagacggttcaCagctgagcagaaattgaagt	15	8	1	4			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	X	9864212	9864212	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2264	p.T755I	0.999	pfam_ASD1	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	79	0	0	75	9	10.71	-	-	-	T	9864212	C	T	9864212	3	4	474	1	0	0	0	0	1	0	0	0	14383	478	17	4	2278	4	SHROOM2	23	9864212	Missense_Mutation	SNP	C	TCGA-B6-A401-01A-11D-A23C-09		9864212	145406348	18	43874										
HTATSF1	0	genome.wustl.edu	37	chrX	135586549	135586549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	ggattggagacctgagaggcGagccggaccatcccggatgc	16	11	0	2			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	X	135586549	135586549	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.761	p.R254Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	45	0	0	51	10	16.39	-	-	-	A	135586549	G	A	135586549	3	1	474	1	0	0	0	0	1	0	0	0	7487	1058	37	1	783	1	HTATSF1	23	135586549	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09	125722337	135586549	19684011	19	43875										
SLITRK2	0	genome.wustl.edu	37	chrX	144906243	144906243	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	tgagcgagtcaaggaacttcCcagcgcaggcctagtccact	11	13	1	1			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	X	144906243	144906243	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.2300	p.P767H	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	30	0	0	36	13	26.53	-	-	-	A	144906243	C	A	144906243	3	1	474	1	0	0	0	0	1	0	0	0	14832	623	22	4	2302	4	SLITRK2	23	144906243	Missense_Mutation	SNP	C	TCGA-B6-A401-01A-11D-A23C-09	9319694	144906243	10364317	20	43876										
FMR1	0	genome.wustl.edu	37	chrX	147026497	147026497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.98427669967513	0.728867623604466	8.01754385964912	0	1	1	0	agagagggagagcttcctgcGcagaggagacggacggcggc	19	9	0	4			TCGA-B6-A401-01A-11D-A23C-09	TCGA-B6-A401-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c4c02c3-179f-4833-850a-131a002cf99a	43e7f97e-c87c-4f11-94fd-98b925fc45bc	X	147026497	147026497	G	A	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.1580	p.R527H	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	32	0	0	23	9	28.12	-	-	-	A	147026497	G	A	147026497	3	1	474	1	0	0	0	0	1	0	0	0	6006	1087	38	1	1638	1	FMR1	23	147026497	Missense_Mutation	SNP	G	TCGA-B6-A401-01A-11D-A23C-09	2120254	147026497	8244063	21	43877										
AGMAT	0	genome.wustl.edu	37	chr1	15901273	15901273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	agaaagatcatacggtggtgAaacttcgacaagatcacagc	10	8	2	4			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	1	15901273	15901273	A	G	SNP	AGMAT	ENST00000375826	human	ensembl	69_37n	-1	known	missense	c.964	p.S322P	0.589	pfam_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771	72	0	0	82	26	24.07	-	-	-	G	15901273	A	G	15901273	3	3	475	1	0	0	0	0	1	0	0	0	385	246	9	5	102	5	AGMAT	1	15901273	Missense_Mutation	SNP	A	TCGA-B6-A402-01A-11D-A23C-09		15901273	233349348	1	43878										
MFAP2	0	genome.wustl.edu	37	chr1	17301448	17301448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cagctcctggcacaggaggcCgccacggattggcacaggcc	14	15	0	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	1	17301448	17301448	C	T	SNP	MFAP2	ENST00000375535	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.520	pfam_ShK_toxin	pfam_MAGP,pfam_ShK_toxin	-	no_errors	MFAP2	HGNC	ENSG00000117122	36	0	0	34	4	10.53	-	-	-	T	17301448	C	T	17301448	2	4	475	1	0	0	0	0	0	0	0	1	9585	639	23	1		1	MFAP2	1	17301448	Silent	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	1400175	17301448	231949173	2	43879										
YTHDF2	0	genome.wustl.edu	37	chr1	29064036	29064036	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ctcccattttcagcctcttcCtcactaccattcctgacgcc	3	19	3	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	1	29064036	29064036	C	T	SNP	YTHDF2	ENST00000478283	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.801	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	75	0	0	37	5	11.9	-	-	-	T	29064036	C	T	29064036	1	4	475	0	1	0	0	0	0	0	0	0	17596	696	24	4		4	YTHDF2	1	29064036	RNA	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	11762588	29064036	220186585	3	43880										
CYP4A22	0	genome.wustl.edu	37	chr1	47603231	47603231	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cctccaagtgacctccctgcTcattctgcttctgctgctga	7	16	3	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	1	47603231	47603231	T	G	SNP	CYP4A22	ENST00000371891	human	ensembl	69_37n	1	known	missense	c.74	p.L25R	0.795	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365	88	0	0	37	14	27.45	-	-	-	G	47603231	T	G	47603231	3	3	475	1	0	0	0	0	1	0	0	0	4215	1551	54	5	76	5	CYP4A22	1	47603231	Missense_Mutation	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	18539195	47603231	201647390	4	43881										
CNTN2	0	genome.wustl.edu	37	chr1	205039136	205039136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	caagatccgcagctacaaccGccgcggggatgggcccgaga	14	14	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	1	205039136	205039136	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.2378	p.R793H	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	105	0	0	229	41	15.07	-	-	-	A	205039136	G	A	205039136	3	1	475	1	0	0	0	0	1	0	0	0	3671	1087	38	1	2444	1	CNTN2	1	205039136	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	157435905	205039136	44211485	5	43882										
TRIM54	0	genome.wustl.edu	37	chr2	27529175	27529175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	taagggtggagcacgtggccGaaatgctgcggaccatcgac	15	10	0	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	2	27529175	27529175	G	A	SNP	TRIM54	ENST00000296098	human	ensembl	69_37n	1	known	missense	c.1087	p.E363K	0.961	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100	119	0	0	78	42	35	-	-	-	A	27529175	G	A	27529175	3	1	475	1	0	0	0	0	1	0	0	0	16624	1059	37	1	1117	1	TRIM54	2	27529175	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09		27529175	215670198	6	43883										
DPPA4	0	genome.wustl.edu	37	chr3	109056310	109056310	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	atccactaaaactgtactgaCctccttgccttttgccttct	4	14	1	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	3	109056310	109056310	C	T	SNP	DPPA4	ENST00000335658	human	ensembl	69_37n	-1	known	splice_site	c.54+1	e1+1	0.995	-	-	-	no_errors	DPPA4	HGNC	ENSG00000121570	34	0	0	31	18	36.73	-	-	-	T	109056310	C	T	109056310	5	4	475	1	0	0	0	0	0	0	1	0	4771	521	18	4	887	4	DPPA4	3	109056310	Splice_Site	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		109056310	88966120	7	43884										
DHX36	0	genome.wustl.edu	37	chr3	153998628	153998628	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ccaagaagatgctcagcaaaCtgtcctttcatgttatgcag	8	10	2	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	3	153998628	153998628	C	G	SNP	DHX36	ENST00000496811	human	ensembl	69_37n	-1	known	missense	c.2400	p.Q800H	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953	25	0	0	27	8	22.86	-	-	-	G	153998628	C	G	153998628	3	3	475	1	0	0	0	0	1	0	0	0	4545	564	20	4	646	4	DHX36	3	153998628	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	44942318	153998628	44023802	8	43885										
ABCE1	0	genome.wustl.edu	37	chr4	146044698	146044698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	catcatggccacctatctagCggatcgcgtcatcgtttttg	9	12	3	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	4	146044698	146044698	C	T	SNP	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	missense	c.1586	p.A529V	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	33	0	0	43	13	23.21	-	-	-	T	146044698	C	T	146044698	3	4	475	1	0	0	0	0	1	0	0	0	64	768	27	1	1644	1	ABCE1	4	146044698	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		146044698	45109578	9	43886										
PCDHB10	0	genome.wustl.edu	37	chr5	140574062	140574062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gctcgtggtgcttgtcaaggAcaatggcgagcctcctcgct	13	12	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	5	140574062	140574062	A	G	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	missense	c.1937	p.D646G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	124	0	0	57	16	21.92	-	-	-	G	140574062	A	G	140574062	3	3	475	1	0	0	0	0	1	0	0	0	11608	275	10	5	1939	5	PCDHB10	5	140574062	Missense_Mutation	SNP	A	TCGA-B6-A402-01A-11D-A23C-09		140574062	40341198	10	43887										
FKBP5	0	genome.wustl.edu	37	chr6	35544895	35544895	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ttgcagccttattctgggggTttacttccagcactttctca	8	11	2	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	6	35544895	35544895	T	C	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	missense	c.1142	p.N381S	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	74	0	0	80	23	22.12	-	-	-	C	35544895	T	C	35544895	3	2	475	1	0	0	0	0	1	0	0	0	5957	1725	60	5	239	5	FKBP5	6	35544895	Missense_Mutation	SNP	T	TCGA-B6-A402-01A-11D-A23C-09		35544895	135570172	11	43888										
PLG	0	genome.wustl.edu	37	chr6	161132417	161132417	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	taatataatgtaaatgctatTtaatcgttgttatactgtat	5	3	0	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	6	161132417	161132417	T	G	SNP	PLG	ENST00000494325	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PLG	HGNC	ENSG00000122194	50	0	0	68	9	11.69	-	-	-	G	161132417	T	G	161132417	1	3	475	0	1	0	0	0	0	0	0	0	12160	1856	64	5		5	PLG	6	161132417	RNA	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	125587522	161132417	9982650	12	43889										
CCR6	0	genome.wustl.edu	37	chr6	167550465	167550465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	caagctcagaattctaaaagGcacaaagccatccgtgtaat	7	10	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	6	167550465	167550465	G	A	SNP	CCR6	ENST00000341935	human	ensembl	69_37n	1	known	silent	c.747	p.R249	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXC/IL8_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR6,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CXC/IL8_rcpt	-	no_errors	CCR6	HGNC	ENSG00000112486	98	0	0	116	40	25.64	-	-	-	A	167550465	G	A	167550465	2	1	475	1	0	0	0	0	0	0	0	1	2974	1194	42	4		4	CCR6	6	167550465	Silent	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	6418048	167550465	3564602	13	43890										
TNRC18	0	genome.wustl.edu	37	chr7	5352791	5352793	+	In_Frame_Del	DEL	GCT	GCT	-													0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	tccccttctgtctccgagccGctgctgctgctgctgctgct							TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	7	5352791	5352793	GCT	-	DEL	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	in_frame_del	c.7731_7729	p.S2577in_frame_del	0.989:0.990:0.991	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	47	0	0	24	3	11.11	-	-	-	-	5352793	GCT	-	5352791	7	5	475	1	0	1	0	1	0	0	0	0	16434	1078	38	0	1191	0	TNRC18	7	5352791	In_Frame_Del	DEL	GCT	TCGA-B6-A402-01A-11D-A23C-09		5352791	153785872	14	43891										
PREX2	0	genome.wustl.edu	37	chr8	69069648	69069648	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gcagcctcactggaaaaggtCaaacagtacaaccagaagct	9	11	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	8	69069648	69069648	C	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	silent	c.4323	p.V1441	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	55	0	0	125	45	26.47	-	-	-	T	69069648	C	T	69069648	2	4	475	1	0	0	0	0	0	0	0	1	12558	813	29	2		2	PREX2	8	69069648	Silent	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		69069648	77294374	15	43892										
SLC7A13	0	genome.wustl.edu	37	chr8	87242151	87242151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	tgggaaaaaaaggctggatgCtgtactcagcaaggagcaga	14	6	1	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	8	87242151	87242151	C	T	SNP	SLC7A13	ENST00000297524	human	ensembl	69_37n	-1	known	missense	c.356	p.S119N	0.045	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893	32	0	0	89	14	13.59	-	-	-	T	87242151	C	T	87242151	3	4	475	1	0	0	0	0	1	0	0	0	14784	797	28	4	1072	4	SLC7A13	8	87242151	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	18172503	87242151	59121871	16	43893										
FAM73B	0	genome.wustl.edu	37	chr9	131822821	131822821	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ccccgctttctctcactgctCttcccagagaggaccctcat	6	18	4	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	9	131822821	131822821	C	T	SNP	FAM73B	ENST00000474639	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM73B	HGNC	ENSG00000148343	89	0	0	47	18	27.69	-	-	-	T	131822821	C	T	131822821	1	4	475	0	1	0	0	0	0	0	0	0	5663	928	32	2		2	FAM73B	9	131822821	RNA	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		131822821	9390610	17	43894										
AKR1C1	0	genome.wustl.edu	37	chr10	5019960	5019960	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	agggcattgcatgaggtctgCcagaaggccctgcgtgtgga	16	9	1	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	10	5019960	5019960	C	T	SNP	AKR1C1	ENST00000477661	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AKR1C1	HGNC	ENSG00000187134	35	0	0	35	10	22.22	-	-	-	T	5019960	C	T	5019960	1	4	475	0	1	0	0	0	0	0	0	0	469	754	26	4		4	AKR1C1	10	5019960	RNA	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		5019960	130514787	18	43895										
UPF2	0	genome.wustl.edu	37	chr10	12046629	12046629	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ttcaaatcaatgaggttctcAtaaaaattccgagcatcttc	5	9	4	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	10	12046629	12046629	A	G	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	silent	c.1404	p.Y468	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	54	0	0	87	23	20.91	-	-	-	G	12046629	A	G	12046629	2	3	475	1	0	0	0	0	0	0	0	1	17101	224	8	5		5	UPF2	10	12046629	Silent	SNP	A	TCGA-B6-A402-01A-11D-A23C-09	7026669	12046629	123488118	19	43896										
CCNJ	0	genome.wustl.edu	37	chr10	97820339	97820339	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ggggggtgggggaacattgtGtgggttttgttttgtttaat	18	1	0	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	10	97820339	97820339	G	T	SNP	CCNJ	ENST00000471424	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.956	-	-	-	no_errors	CCNJ	HGNC	ENSG00000107443	27	0	0	18	3	14.29	-	-	-	T	97820339	G	T	97820339	1	4	475	0	1	0	0	0	0	0	0	0	2957	1392	48	4		4	CCNJ	10	97820339	RNA	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	85773710	97820339	37714408	20	43897										
C10orf90	0	genome.wustl.edu	37	chr10	128193182	128193182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	agctgtttctggagaactctGtgcaggcaaaagatctctga	11	8	3	3			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	10	128193182	128193182	G	A	SNP	C10orf90	ENST00000544758	human	ensembl	69_37n	-1	known	missense	c.878	p.T293I	0.001	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493	37	0	0	36	4	10	-	-	-	A	128193182	G	A	128193182	3	1	475	1	0	0	0	0	1	0	0	0	1633	1377	48	4	1540	4	C10orf90	10	128193182	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	30372843	128193182	7341565	21	43898										
AP2A2	0	genome.wustl.edu	37	chr11	1010694	1010694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gtgccgtttgtcttcgtggcCatcctgcagatgagcaccgt	12	12	1	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	11	1010694	1010694	C	T	SNP	AP2A2	ENST00000534328	human	ensembl	69_37n	1	putative	missense	c.1124	p.P375L	0.003	NULL	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold	-	no_errors	AP2A2	HGNC	ENSG00000183020	52	0	0	24	5	17.24	-	-	-	T	1010694	C	T	1010694	3	4	475	1	0	0	0	0	1	0	0	0	741	609	21	4		4	AP2A2	11	1010694	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		1010694	133995822	22	43899										
INTS5	0	genome.wustl.edu	37	chr11	62416636	62416636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ctcccgtcggatgctatctcCgtggcgggaggccaggtgac	15	13	1	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	11	62416636	62416636	C	T	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.916	p.G306R	1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	64	0	0	47	12	20.34	-	-	-	T	62416636	C	T	62416636	3	4	475	1	0	0	0	0	1	0	0	0	7835	661	23	1	2147	1	INTS5	11	62416636	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	61405942	62416636	72589880	23	43900										
KLC2	0	genome.wustl.edu	37	chr11	66034679	66034679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ggttcgggccagcaggaggtGccggctggagtctccaccat	16	12	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	11	66034679	66034679	G	T	SNP	KLC2	ENST00000394078	human	ensembl	69_37n	1	putative	missense	c.772	p.A258S	0.001	NULL	pfam_Rabaptin_Rab5-bd_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	50	0	0	12	42	77.78	-	-	-	T	66034679	G	T	66034679	3	4	475	1	0	0	0	0	1	0	0	0	8387	1334	46	4		4	KLC2	11	66034679	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	3618043	66034679	68971837	24	43901										
KRT85	0	genome.wustl.edu	37	chr12	52756655	52756655	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cacctggcacttggcattctCaatctcggccgtcagcctct	8	16	4	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	12	52756655	52756655	C	G	SNP	KRT85	ENST00000257901	human	ensembl	69_37n	-1	known	missense	c.1060	p.E354Q	0.999	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443	80	0	0	45	21	31.82	-	-	-	G	52756655	C	G	52756655	3	3	475	1	0	0	0	0	1	0	0	0	8552	835	29	2	479	2	KRT85	12	52756655	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		52756655	81095240	25	43902										
PDE1B	0	genome.wustl.edu	37	chr12	54955324	54955324	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cttgggggccctggggctccTggggtcaggattttgatact	16	9	1	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	12	54955324	54955324	T	C	SNP	PDE1B	ENST00000394277	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE1B	HGNC	ENSG00000123360	72	0	0	49	6	10.91	-	-	-	C	54955324	T	C	54955324	1	2	475	0	1	0	0	0	0	0	0	0	11707	1595	55	5		5	PDE1B	12	54955324	RNA	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	2198669	54955324	78896571	26	43903										
TPP2	0	genome.wustl.edu	37	chr13	103301463	103301463	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ttgacattaccacccaaataTaaccagccattctttgttac	3	12	1	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	13	103301463	103301463	T	G	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	nonsense	c.2835	p.Y945*	0.465	pfam_Peptidase_S8A_TPPII	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	67	0	0	29	16	35.56	-	-	-	G	103301463	T	G	103301463	4	3	475	1	0	0	0	0	0	1	0	0	16508	1413	49	5	2921	5	TPP2	13	103301463	Nonsense_Mutation	SNP	T	TCGA-B6-A402-01A-11D-A23C-09		103301463	11868415	27	43904										
HEATR5A	0	genome.wustl.edu	37	chr14	31762674	31762674	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ccactaaacttttaaaaacaGatgaatactgaggtccaatt	5	8	0	3			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	31762674	31762674	G	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.5960	p.S1987Y	0.768	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	33	0	0	55	11	16.67	-	-	-	T	31762674	G	T	31762674	3	4	475	1	0	0	0	0	1	0	0	0	7082	942	33	2	166	2	HEATR5A	14	31762674	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09		31762674	75586866	28	43905			1	72		4	4	586	G		1.57221e-10
HEATR5A	0	genome.wustl.edu	37	chr14	31762749	31762749	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ttctcattatggaagttgctGatcccagagaattttcatcc	7	9	2	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	31762749	31762749	G	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	nonsense	c.5885	p.S1962*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	32	0	0	43	10	18.87	-	-	-	T	31762749	G	T	31762749	4	4	475	1	0	0	0	0	0	1	0	0	7082	1294	45	2	241	2	HEATR5A	14	31762749	Nonsense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	75	31762749	75586791	29	43906			1	72		4	4	586	G		1.57221e-10
HEATR5A	0	genome.wustl.edu	37	chr14	31763215	31763215	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	atttcctgcagtttttccatGatacaggatgctaaagagta	8	7	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	31763215	31763215	G	A	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.4373	p.S1458L	0.872	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	52	0	0	95	17	15.18	-	-	-	A	31763215	G	A	31763215	3	1	475	1	0	0	0	0	1	0	0	0	7082	1280	45	2	433	2	HEATR5A	14	31763215	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	466	31763215	75586325	30	43907			1	72		4	4	586	G		1.57221e-10
HEATR5A	0	genome.wustl.edu	37	chr14	31763259	31763259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gtatgggtaggaaacagctgGatttggatactgaaagatgg	15	3	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	31763259	31763259	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.5653	p.P1885S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	36	0	0	73	18	19.78	-	-	-	A	31763259	G	A	31763259	3	1	475	1	0	0	0	0	1	0	0	0	7082	1174	41	2	477	2	HEATR5A	14	31763259	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	44	31763259	75586281	31	43908			1	72		4	4	586	G		1.57221e-10
SAV1	0	genome.wustl.edu	37	chr14	51111508	51111508	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ggccttcttatttgtgtgatCtacataataggttccaaatt	7	7	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	51111508	51111508	C	G	SNP	SAV1	ENST00000324679	human	ensembl	69_37n	-1	known	missense	c.760	p.D254H	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_SARAH,pfscan_WW_Rsp5_WWP	-	no_errors	SAV1	HGNC	ENSG00000151748	42	0	0	38	11	22.45	-	-	-	G	51111508	C	G	51111508	3	3	475	1	0	0	0	0	1	0	0	0	13943	913	32	2	403	2	SAV1	14	51111508	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	19348249	51111508	56238032	32	43909										
CATSPERB	0	genome.wustl.edu	37	chr14	92102918	92102918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gcagtctcaaagcccatatcTggaggctggaaacagagaaa	11	9	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	92102918	92102918	T	C	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	silent	c.1593	p.P531	0.203	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	14	0	0	13	9	40.91	-	-	-	C	92102918	T	C	92102918	2	2	475	1	0	0	0	0	0	0	0	1	2716	1567	55	5		5	CATSPERB	14	92102918	Silent	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	40991410	92102918	15246622	33	43910										
CATSPERB	0	genome.wustl.edu	37	chr14	92189493	92189493	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	acacacttagcattgcttttGatgcaatttcattttcagtt	5	8	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	92189493	92189493	G	C	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	nonsense	c.209	p.S70*	0.001	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	31	0	0	54	6	10	-	-	-	C	92189493	G	C	92189493	4	2	475	1	0	0	0	0	0	1	0	0	2716	1294	45	2	3237	2	CATSPERB	14	92189493	Nonsense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	86575	92189493	15160047	34	43911			2	73	60426234	2	2	23	G		3.69541e-05
CATSPERB	0	genome.wustl.edu	37	chr14	92189515	92189515	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	tgcaatttcattttcagtttGgaagaaacactggattttct	7	6	3	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	14	92189515	92189515	G	C	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	missense	c.187	p.Q63E	0.126	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	26	0	0	39	7	15.22	-	-	-	C	92189515	G	C	92189515	3	2	475	1	0	0	0	0	1	0	0	0	2716	1357	47	4	3259	4	CATSPERB	14	92189515	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	22	92189515	15160025	35	43912			2	73	60426234	2	2	23	G		3.69541e-05
ZNF205	0	genome.wustl.edu	37	chr16	3169359	3169359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gagagtccagtggggcgtccCgcagtgcgcgcaggaagcag	18	11	0	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	16	3169359	3169359	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	69_37n	1	known	missense	c.698	p.P233L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386	32	0	0	7	31	81.58	-	-	-	T	3169359	C	T	3169359	3	4	475	1	0	0	0	0	1	0	0	0	17860	652	23	1	720	1	ZNF205	16	3169359	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		3169359	87185394	36	43913										
ADAMTS18	0	genome.wustl.edu	37	chr16	77353958	77353958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ctggatttcgatgcttcgggCgccagctggaatgaggacca	14	10	0	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	16	77353958	77353958	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	missense	c.2320	p.A774T	1.000	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	19	0	0	27	12	30.77	-	-	-	T	77353958	C	T	77353958	3	4	475	1	0	0	0	0	1	0	0	0	263	768	27	1	1377	1	ADAMTS18	16	77353958	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	74184599	77353958	13000795	37	43914										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	49	0	0	17	37	68.52	-	-	-	A	7578263	G	A	7578263	4	1	475	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09		7578263	73616947	38	43915										
KRT40	0	genome.wustl.edu	37	chr17	39135122	39135122	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cctccagccgggccttcacgTccaggagcacctggtactcc	10	18	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	17	39135122	39135122	T	G	SNP	KRT40	ENST00000377755	human	ensembl	69_37n	-1	known	missense	c.1130	p.D377A	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT40	HGNC	ENSG00000204889	98	0	0	65	14	17.72	-	-	-	G	39135122	T	G	39135122	3	3	475	1	0	0	0	0	1	0	0	0	8531	1667	58	5	173	5	KRT40	17	39135122	Missense_Mutation	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	31556859	39135122	42060088	39	43916										
HOXB1	0	genome.wustl.edu	37	chr17	46608135	46608135	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cccccaccgtagcggccctcGcttgcatagctgtcaaccgc	9	19	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	17	46608135	46608135	G	A	SNP	HOXB1	ENST00000239174	human	ensembl	69_37n	-1	known	silent	c.132	p.S44	0.847	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094	98	0	0	45	55	54.46	-	-	-	A	46608135	G	A	46608135	2	1	475	1	0	0	0	0	0	0	0	1	7350	1078	38	1		1	HOXB1	17	46608135	Silent	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	7473013	46608135	34587075	40	43917										
CIDEA	0	genome.wustl.edu	37	chr18	12254819	12254819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cgagcaaagcttccgcgatgCgaggggaccgggcttctggg	17	11	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	18	12254819	12254819	C	T	SNP	CIDEA	ENST00000522713	human	ensembl	69_37n	1	known	missense	c.437	p.A146V	0.000	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	48	0	0	12	25	67.57	-	-	-	T	12254819	C	T	12254819	3	4	475	1	0	0	0	0	1	0	0	0	3454	760	27	1	48	1	CIDEA	18	12254819	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		12254819	65822429	41	43918										
CDC34	0	genome.wustl.edu	37	chr19	532054	532054	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gagggcgatctatacaactgGgaggtggccatcttcgggcc	15	10	2	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	532054	532054	G	A	SNP	CDC34	ENST00000215574	human	ensembl	69_37n	1	known	nonsense	c.123	p.W41*	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	CDC34	HGNC	ENSG00000099804	90	0	0	56	9	13.85	-	-	-	A	532054	G	A	532054	4	1	475	1	0	0	0	0	0	1	0	0	3096	1241	43	4	125	4	CDC34	19	532054	Nonsense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09		532054	58596929	42	43919										
ACTL9	0	genome.wustl.edu	37	chr19	8807972	8807972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	tgggtctcggctggcagagcGcgcagcagctctgcccggaa	16	13	2	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	8807972	8807972	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	silent	c.1080	p.R360	0.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	58	0	0	28	8	22.22	-	-	-	A	8807972	G	A	8807972	2	1	475	1	0	0	0	0	0	0	0	1	203	1074	38	1		1	ACTL9	19	8807972	Silent	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	8275918	8807972	50321011	43	43920										
HKR1	0	genome.wustl.edu	37	chr19	37853116	37853116	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	tcatctctctcagctgttttCaagtttatgggcaggaaatc	8	9	4	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	37853116	37853116	C	A	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	nonsense	c.419	p.S140*	0.559	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	75	0	0	102	12	10.53	-	-	-	A	37853116	C	A	37853116	4	1	475	1	0	0	0	0	0	1	0	0	7245	838	29	2	433	2	HKR1	19	37853116	Nonsense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	29045144	37853116	21275867	44	43921										
LTBP4	0	genome.wustl.edu	37	chr19	41133733	41133733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ccgttgcttcgacggctaccGcctggacatgacccgcatgg	12	15	0	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	41133733	41133733	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.4688	p.R1563H	1.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	112	0	0	74	36	32.73	-	-	-	A	41133733	G	A	41133733	3	1	475	1	0	0	0	0	1	0	0	0	9142	1087	38	1	5109	1	LTBP4	19	41133733	Missense_Mutation	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	3280617	41133733	17995250	45	43922										
PHLDB3	0	genome.wustl.edu	37	chr19	44001403	44001403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	actccaggtcctcataggcaCgttgggccacatccagttgt	10	13	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	44001403	44001403	C	T	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	missense	c.692	p.R231H	0.918	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	39	0	0	28	8	22.22	-	-	-	T	44001403	C	T	44001403	3	4	475	1	0	0	0	0	1	0	0	0	11927	536	19	1	1274	1	PHLDB3	19	44001403	Missense_Mutation	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	2867670	44001403	15127580	46	43923										
ZNF114	0	genome.wustl.edu	37	chr19	48789742	48789742	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	actggggcaacctctgccaaCgctccaaattccggttcaca	8	15	2	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	48789742	48789742	C	T	SNP	ZNF114	ENST00000315849	human	ensembl	69_37n	1	known	silent	c.861	p.N287	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	25	0	0	8	8	50	-	-	-	T	48789742	C	T	48789742	2	4	475	1	0	0	0	0	0	0	0	1	17812	535	19	1		1	ZNF114	19	48789742	Silent	SNP	C	TCGA-B6-A402-01A-11D-A23C-09	4788339	48789742	10339241	47	43924										
FUT1	0	genome.wustl.edu	37	chr19	49254065	49254065	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	gagagcttcaggaaaggatcTctcaagtccgcgtactcctc	10	12	3	1			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	19	49254065	49254065	T	C	SNP	FUT1	ENST00000310160	human	ensembl	69_37n	-1	known	silent	c.474	p.R158	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	64	0	0	39	20	33.9	-	-	-	C	49254065	T	C	49254065	2	2	475	1	0	0	0	0	0	0	0	1	6150	1548	54	5		5	FUT1	19	49254065	Silent	SNP	T	TCGA-B6-A402-01A-11D-A23C-09	464323	49254065	9874918	48	43925										
C20orf26	0	genome.wustl.edu	37	chr20	20269357	20269357	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cttgtgattgataccaacttCcacaccaacgacatagccat	5	13	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	20	20269357	20269357	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	silent	c.2901	p.F967	0.998	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	54	0	0	66	19	22.35	-	-	-	T	20269357	C	T	20269357	2	4	475	1	0	0	0	0	0	0	0	1	2126	854	30	2		2	C20orf26	20	20269357	Silent	SNP	C	TCGA-B6-A402-01A-11D-A23C-09		20269357	42756163	49	43926										
ERGIC3	0	genome.wustl.edu	37	chr20	34136682	34136682	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	cttcttggtgagcttgagtgGtcctcttctgcctgctgctc	11	12	3	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	20	34136682	34136682	G	T	SNP	ERGIC3	ENST00000489071	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERGIC3	HGNC	ENSG00000125991	15	0	0	18	12	40	-	-	-	T	34136682	G	T	34136682	1	4	475	0	1	0	0	0	0	0	0	0	5262	1276	44	4		4	ERGIC3	20	34136682	RNA	SNP	G	TCGA-B6-A402-01A-11D-A23C-09	13867325	34136682	28888838	50	43927										
CACNA1I	0	genome.wustl.edu	37	chr22	40057234	40057234	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	ccccgactctcactgcagccGgaccccatgctggtggccct	10	19	1	0			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	22	40057234	40057234	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	silent	c.2838	p.P946	0.259	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	56	0	0	51	11	17.74	-	-	-	A	40057234	G	A	40057234	2	1	475	1	0	0	0	0	0	0	0	1	2571	1103	39	1		1	CACNA1I	22	40057234	Silent	SNP	G	TCGA-B6-A402-01A-11D-A23C-09		40057234	11247332	51	43928										
DDX3X	0	genome.wustl.edu	37	chrX	41202082	41202082	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	6	0.479717513739179	1.54403409090909	5.0953125	0.909877232142857	1	1	0	caacaactgtcctccacataTtgaaagtgtgagtatttttg	7	8	0	2			TCGA-B6-A402-01A-11D-A23C-09	TCGA-B6-A402-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d7db268b-d2b0-48f6-8a1f-c7fa1c12b5fd	49d02ca7-0a88-4936-8f0d-aec9b9b888a4	X	41202082	41202082	T	C	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.536	p.I179T	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	48	0	0	16	18	52.94	-	-	-	C	41202082	T	C	41202082	3	2	475	1	0	0	0	0	1	0	0	0	4389	1493	52	5	558	5	DDX3X	23	41202082	Missense_Mutation	SNP	T	TCGA-B6-A402-01A-11D-A23C-09		41202082	114068478	52	43929										
HNRNPR	0	genome.wustl.edu	37	chr1	23640179	23640182	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ccgtagtagccaagtttctcAcaaacaaaacttttacctag							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	1	23640179	23640182	ACAA	-	DEL	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	frame_shift_del	c.1043_1040	p.F347fs	1.000:1.000:1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	53	0	0	48	6	10.91	-	-	-	-	23640182	ACAA	-	23640179	7	5	476	1	0	1	0	1	0	0	0	0	7323	159	6	0	879	0	HNRNPR	1	23640179	Frame_Shift_Del	DEL	ACAA	TCGA-B6-A408-01A-12D-A243-09		23640179	225610442	1	43930										
SIPA1L2	0	genome.wustl.edu	37	chr1	232650900	232650900	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ggggtaccattagccggaccAccaccgccagtctcattgga	11	14	1	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	1	232650900	232650900	A	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	silent	c.186	p.G62	0.056	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	75	0	0	15	13	46.43	-	-	-	C	232650900	A	C	232650900	2	2	476	1	0	0	0	0	0	0	0	1	14419	146	6	5		5	SIPA1L2	1	232650900	Silent	SNP	A	TCGA-B6-A408-01A-12D-A243-09	209010721	232650900	16599721	2	43931										
CTNNA2	0	genome.wustl.edu	37	chr2	80085281	80085281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gcggacatggcagatgtcatGagacttttatcccatctgaa	10	9	2	3			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	2	80085281	80085281	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.543	p.M181I	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	49	0	0	14	7	33.33	-	-	-	A	80085281	G	A	80085281	3	1	476	1	0	0	0	0	1	0	0	0	4045	1290	45	2	451	2	CTNNA2	2	80085281	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09		80085281	163114092	3	43932										
ADAMTS9	0	genome.wustl.edu	37	chr3	64547294	64547294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tccaagtgtagaggggacacCgtgggccttggcagtcgcgt	16	10	0	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	3	64547294	64547294	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4658	p.R1553Q	0.056	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	57	0	0	25	12	32.43	-	-	-	T	64547294	C	T	64547294	3	4	476	1	0	0	0	0	1	0	0	0	273	652	23	1	1189	1	ADAMTS9	3	64547294	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09		64547294	133475136	4	43933										
FOXP1	0	genome.wustl.edu	37	chr3	71096185	71096185	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	acaggaggtgctgctgctgtAactgctgcatctgtaaaagc	12	9	1	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	3	71096185	71096185	A	T	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	nonsense	c.572	p.L191*	0.873	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	39	0	0	21	10	32.26	-	-	-	T	71096185	A	T	71096185	4	4	476	1	0	0	0	0	0	1	0	0	6074	372	13	5	1509	5	FOXP1	3	71096185	Nonsense_Mutation	SNP	A	TCGA-B6-A408-01A-12D-A243-09	6548891	71096185	126926245	5	43934										
PPP2R3A	0	genome.wustl.edu	37	chr3	135745748	135745748	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tctccaagtagtccccgaccTctctccccggttccccatgt	6	19	2	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	3	135745748	135745748	T	G	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	silent	c.2070	p.P690	0.829	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	53	0	0	25	8	24.24	-	-	-	G	135745748	T	G	135745748	2	3	476	1	0	0	0	0	0	0	0	1	12465	1538	54	5		5	PPP2R3A	3	135745748	Silent	SNP	T	TCGA-B6-A408-01A-12D-A243-09	64649563	135745748	62276682	6	43935										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0	33	13	28.26	-	-	-	A	178936082	G	A	178936082	3	1	476	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	43190334	178936082	19086348	7	43936										
ETV5	0	genome.wustl.edu	37	chr3	185797727	185797727	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ctctggaagcgaatggggggCgggggcggggcccacacctt	19	11	1	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	3	185797727	185797727	C	G	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.655	p.A219P	0.799	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	40	0	0	20	24	54.55	-	-	-	G	185797727	C	G	185797727	3	3	476	1	0	0	0	0	1	0	0	0	5319	768	27	3	1031	3	ETV5	3	185797727	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09	6861645	185797727	12224703	8	43937										
ANK2	0	genome.wustl.edu	37	chr4	114223960	114223960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	caaactaaatgtacctgagaCgatgactgaggttcttgatg	10	7	1	4			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	4	114223960	114223960	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2513	p.T838M	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	74	0	0	60	12	16.67	-	-	-	T	114223960	C	T	114223960	3	4	476	1	0	0	0	0	1	0	0	0	621	536	19	1	2628	1	ANK2	4	114223960	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09		114223960	76930316	9	43938										
MAD2L1	0	genome.wustl.edu	37	chr4	120986906	120986906	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	agcaaggtgagtccgtatttCtgcactcgagtaaaggtttc	11	8	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	4	120986906	120986906	C	T	SNP	MAD2L1	ENST00000296509	human	ensembl	69_37n	-1	known	silent	c.141	p.Q47	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109	70	0	0	41	12	22.64	-	-	-	T	120986906	C	T	120986906	2	4	476	1	0	0	0	0	0	0	0	1	9215	912	32	2		2	MAD2L1	4	120986906	Silent	SNP	C	TCGA-B6-A408-01A-12D-A243-09	6762946	120986906	70167370	10	43939										
FAT1	0	genome.wustl.edu	37	chr4	187521114	187521114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ggttgctggcgcagtcttccGtggccgtcaggaagcagcct	15	12	2	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	4	187521114	187521114	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.12041	p.T4014M	0.042	pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	74	0	0	53	7	11.67	-	-	-	A	187521114	G	A	187521114	3	1	476	1	0	0	0	0	1	0	0	0	5735	1145	40	1	1749	1	FAT1	4	187521114	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	66534208	187521114	3633162	11	43940										
SERPINB6	0	genome.wustl.edu	37	chr6	2955875	2955875	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	aagccctggtggatgtctccAccaccgccacttttattgaa	8	13	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	6	2955875	2955875	A	C	SNP	SERPINB6	ENST00000380500	human	ensembl	69_37n	-1	known	missense	c.161	p.V54G	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SERPINB6	HGNC	ENSG00000124570	37	0	0	9	13	59.09	-	-	-	C	2955875	A	C	2955875	3	2	476	1	0	0	0	0	1	0	0	0	14193	146	6	5	955	5	SERPINB6	6	2955875	Missense_Mutation	SNP	A	TCGA-B6-A408-01A-12D-A243-09		2955875	168159192	12	43941										
BTN3A1	0	genome.wustl.edu	37	chr6	26406424	26406424	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	cctctgacagtggaaagtacTtgtgttatttccaagatggt	10	7	1	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	6	26406424	26406424	T	C	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	silent	c.373	p.L125	0.234	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	10	0	0	9	6	40	-	-	-	C	26406424	T	C	26406424	2	2	476	1	0	0	0	0	0	0	0	1	1571	1606	56	5		5	BTN3A1	6	26406424	Silent	SNP	T	TCGA-B6-A408-01A-12D-A243-09	23450549	26406424	144708643	13	43942										
URGCP	0	genome.wustl.edu	37	chr7	43916996	43916996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	acagaaccaccagccttgacCgtctctccagtcggacgtgc	9	16	1	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	43916996	43916996	C	T	SNP	URGCP	ENST00000453200	human	ensembl	69_37n	-1	known	missense	c.2066	p.R689Q	0.006	NULL	prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608	66	0	0	37	10	21.28	-	-	-	T	43916996	C	T	43916996	3	4	476	1	0	0	0	0	1	0	0	0	17123	652	23	1	733	1	URGCP	7	43916996	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09		43916996	115221667	14	43943										
ZNF479	0	genome.wustl.edu	37	chr7	57187740	57187740	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	cacatgtgtagggtctctctCcagtatgaattctcttgtgg	10	9	3	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	57187740	57187740	C	A	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.1382	p.G461V	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	75	0	0	38	9	19.15	-	-	-	A	57187740	C	A	57187740	3	1	476	1	0	0	0	0	1	0	0	0	18029	855	30	2	196	2	ZNF479	7	57187740	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09	13270744	57187740	101950923	15	43944										
AKAP9	0	genome.wustl.edu	37	chr7	91667987	91667987	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ggaaaggaaattttattatcAaatagtgatccccatgatat	7	5	1	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	91667987	91667987	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	silent	c.4629	p.S1543	0.009	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	13	0	0	7	7	50	-	-	-	G	91667987	A	G	91667987	2	3	476	1	0	0	0	0	0	0	0	1	459	117	5	5		5	AKAP9	7	91667987	Silent	SNP	A	TCGA-B6-A408-01A-12D-A243-09	34480247	91667987	67470676	16	43945										
ZAN	0	genome.wustl.edu	37	chr7	100349919	100349919	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ccaccatccccacagaaaaaTccaccatctccccagaaaaa	2	18	1	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	100349919	100349919	T	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.2191	p.S731P	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	38	0	0	34	13	27.66	-	-	-	C	100349919	T	C	100349919	3	2	476	1	0	0	0	0	1	0	0	0	17610	1435	50	5	2241	5	ZAN	7	100349919	Missense_Mutation	SNP	T	TCGA-B6-A408-01A-12D-A243-09	8681932	100349919	58788744	17	43946										
TRPV5	0	genome.wustl.edu	37	chr7	142622659	142622659	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ctggaggatggtgatgtctcGagaatgagtgcggttgccac	16	7	1	3			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	142622659	142622659	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	69_37n	-1	known	nonsense	c.1087	p.R363*	0.229	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV5_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412	102	0	0	48	8	14.29	-	-	-	A	142622659	G	A	142622659	4	1	476	1	0	0	0	0	0	1	0	0	16695	1066	37	1	1134	1	TRPV5	7	142622659	Nonsense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	42272740	142622659	16516004	18	43947										
MLL3	0	genome.wustl.edu	37	chr7	151868358	151868358	+	Frame_Shift_Del	DEL	G	G	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ggcagtgttacctgaggaatGgcctgtggtccaaggttctg							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	151868358	151868358	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.9444	p.I3149fs	0.003	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	48	0	0	26	14	35	-	-	-	-	151868358	G	-	151868358	7	5	476	1	0	1	0	1	0	0	0	0	9693	1335	47	0	5371	0	MLL3	7	151868358	Frame_Shift_Del	DEL	G	TCGA-B6-A408-01A-12D-A243-09	9245699	151868358	7270305	19	43948	354	2								
MLL3	0	genome.wustl.edu	37	chr7	151868360	151868360	+	Missense_Mutation	SNP	C	C	A													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	cagtgttacctgaggaatggCctgtggtccaaggttctgtc							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	7	151868360	151868360	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.9442	p.A3148S	0.950	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	51	0	0	25	14	35.9	-	-	-	A	151868360	C	A	151868360	3	1	476	1	0	0	0	0	1	0	0	0	9693	739	26	4	5373	4	MLL3	7	151868360	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09	2	151868360	7270303	20	43949	354	2								
CSMD1	0	genome.wustl.edu	37	chr8	3265427	3265427	+	Frame_Shift_Del	DEL	A	A	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gtgggcgtacttactggtgtAagtgatgttgaaccctctgc							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	8	3265427	3265427	A	-	DEL	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	frame_shift_del	c.2068	p.Y690fs	0.993	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	19	0	0	2	2	50	-	-	-	-	3265427	A	-	3265427	7	5	476	1	0	1	0	1	0	0	0	0	3976	362	13	0	8857	0	CSMD1	8	3265427	Frame_Shift_Del	DEL	A	TCGA-B6-A408-01A-12D-A243-09		3265427	143098595	21	43950										
FAM86B1	0	genome.wustl.edu	37	chr8	12040822	12040822	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gtccacgttgggggaacgtcAtccttgatacacacgttttt	10	10	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	8	12040822	12040822	A	G	SNP	FAM86B1	ENST00000529146	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM86B1	HGNC	ENSG00000186523	29	0	0	14	3	17.65	-	-	-	G	12040822	A	G	12040822	1	3	476	0	1	0	0	0	0	0	0	0	5689	232	8	5		5	FAM86B1	8	12040822	RNA	SNP	A	TCGA-B6-A408-01A-12D-A243-09	8775395	12040822	134323200	22	43951										
MSR1	0	genome.wustl.edu	37	chr8	16043667	16043667	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	atgaaagttgttcatgctcaCggttttttgttgagaagaga	11	4	2	3			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	8	16043667	16043667	C	T	SNP	MSR1	ENST00000445506	human	ensembl	69_37n	-1	putative	splice_site	c.50+1	e1+1	0.001	-	-	-	no_errors	MSR1	HGNC	ENSG00000038945	64	0	0	18	4	18.18	-	-	-	T	16043667	C	T	16043667	5	4	476	1	0	0	0	0	0	0	1	0	9958	551	19	1		1	MSR1	8	16043667	Splice_Site	SNP	C	TCGA-B6-A408-01A-12D-A243-09	4002845	16043667	130320355	23	43952										
ENG	0	genome.wustl.edu	37	chr9	130580444	130580444	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	cgcagggctaccgtgcagctGagggtgccggttttgggtat	17	9	0	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	9	130580444	130580444	G	A	SNP	ENG	ENST00000373203	human	ensembl	69_37n	-1	known	silent	c.1641	p.L547	0.995	pfam_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	88	0	0	48	21	30.43	-	-	-	A	130580444	G	A	130580444	2	1	476	1	0	0	0	0	0	0	0	1	5154	1277	45	2		2	ENG	9	130580444	Silent	SNP	G	TCGA-B6-A408-01A-12D-A243-09		130580444	10632987	24	43953										
MTPAP	0	genome.wustl.edu	37	chr10	30653864	30653864	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ctcacacccaccccacccccAcccccacagaggtgctgcaa	5	23	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	10	30653864	30653864	A	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	0.011	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	66	0	0	17	18	50	-	-	-	C	30653864	A	C	30653864	2	2	476	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653864	Silent	SNP	A	TCGA-B6-A408-01A-12D-A243-09		30653864	104880883	25	43954										
GPRIN2	0	genome.wustl.edu	37	chr10	46999484	46999484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	cagtgccaccactagacctgGgggacacaactgcccacagc	10	16	0	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	10	46999484	46999484	G	T	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.604	p.G202W	0.015	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	86	0	0	35	4	10.26	-	-	-	T	46999484	G	T	46999484	3	4	476	1	0	0	0	0	1	0	0	0	6781	1232	43	4	606	4	GPRIN2	10	46999484	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	16345620	46999484	88535263	26	43955										
MRE11A	0	genome.wustl.edu	37	chr11	94163112	94163112	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	atcaacccctttcgatacttGactctgggacatgattttgc	7	11	2	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	11	94163112	94163112	G	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.2035	p.Q679K	0.943	pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	61	0	0	33	4	10.81	-	-	-	T	94163112	G	T	94163112	3	4	476	1	0	0	0	0	1	0	0	0	9831	1299	45	2	99	2	MRE11A	11	94163112	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09		94163112	40843404	27	43956										
PTMS	0	genome.wustl.edu	37	chr12	6879662	6879662	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tctgggcctggaggtgggggTgggggcagccaagtccagcc	20	10	1	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	12	6879662	6879662	T	G	SNP	PTMS	ENST00000538057	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	PTMS	HGNC	ENSG00000159335	43	0	0	25	14	35.9	-	-	-	G	6879662	T	G	6879662	1	3	476	0	1	0	0	0	0	0	0	0	12848	1711	59	5		5	PTMS	12	6879662	RNA	SNP	T	TCGA-B6-A408-01A-12D-A243-09		6879662	126972233	28	43957										
CD163L1	0	genome.wustl.edu	37	chr12	7586027	7586027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gttatggcttccccattcccGgtgttgacattcccagagag	10	12	0	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	12	7586027	7586027	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.388	p.R130W	0.002	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	80	0	0	35	18	33.96	-	-	-	A	7586027	G	A	7586027	3	1	476	1	0	0	0	0	1	0	0	0	2997	1115	39	1	4041	1	CD163L1	12	7586027	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	706365	7586027	126265868	29	43958										
N4BP2L1	0	genome.wustl.edu	37	chr13	32976872	32976872	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	aagagactgtttactcaaatCtgcagaattcccagcatcag	7	10	3	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	13	32976872	32976872	C	T	SNP	N4BP2L1	ENST00000459716	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	N4BP2L1	HGNC	ENSG00000139597	49	0	0	71	14	16.47	-	-	-	T	32976872	C	T	32976872	1	4	476	0	1	0	0	0	0	0	0	0	10183	928	32	2		2	N4BP2L1	13	32976872	RNA	SNP	C	TCGA-B6-A408-01A-12D-A243-09		32976872	82193006	30	43959										
LMO7	0	genome.wustl.edu	37	chr13	76409442	76409442	+	Frame_Shift_Del	DEL	A	A	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	aaatcttcaaatctatctgtAacaactgatttctccgaaag							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	13	76409442	76409442	A	-	DEL	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	frame_shift_del	c.3456	p.T1153fs	0.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	37	0	0	10	2	16.67	-	-	-	-	76409442	A	-	76409442	7	5	476	1	0	1	0	1	0	0	0	0	8911	349	13	0	3530	0	LMO7	13	76409442	Frame_Shift_Del	DEL	A	TCGA-B6-A408-01A-12D-A243-09	43432570	76409442	38760436	31	43960										
TMCO3	0	genome.wustl.edu	37	chr13	114188430	114188430	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tttcactagcggcggtttttCttttatgtcttgttataaag	8	6	3	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	13	114188430	114188430	C	T	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	missense	c.1414	p.L472F	0.986	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	73	0	0	24	12	33.33	-	-	-	T	114188430	C	T	114188430	3	4	476	1	0	0	0	0	1	0	0	0	16092	913	32	2	1444	2	TMCO3	13	114188430	Missense_Mutation	SNP	C	TCGA-B6-A408-01A-12D-A243-09	37778988	114188430	981448	32	43961										
FBXO33	0	genome.wustl.edu	37	chr14	39900893	39900893	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ccagtcccggtgtccgcgccAcctccgtcccctgggccacc	10	22	0	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	14	39900893	39900893	A	C	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	silent	c.474	p.G158	0.805	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	60	0	0	18	14	43.75	-	-	-	C	39900893	A	C	39900893	2	2	476	1	0	0	0	0	0	0	0	1	5789	146	6	5		5	FBXO33	14	39900893	Silent	SNP	A	TCGA-B6-A408-01A-12D-A243-09		39900893	67448647	33	43962										
CTSH	0	genome.wustl.edu	37	chr15	79229660	79229661	+	Frame_Shift_Del	DEL	TT	TT	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	aaggaaggcgttccacgtacTtttaaatgtgtggttcccat							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	15	79229660	79229661	TT	-	DEL	CTSH	ENST00000220166	human	ensembl	69_37n	-1	known	frame_shift_del	c.229_228	p.K76fs	0.995:0.935	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811	63	0	0	37	5	11.36	-	-	-	-	79229661	TT	-	79229660	7	5	476	1	0	1	0	1	0	0	0	0	4068	1623	56	0	818	0	CTSH	15	79229660	Frame_Shift_Del	DEL	TT	TCGA-B6-A408-01A-12D-A243-09		79229660	23301732	34	43963										
XYLT1	0	genome.wustl.edu	37	chr16	17292094	17292094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ggggtagtcggccgcactcaGgttgatgaagaagtcccagg	16	9	1	3			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	16	17292094	17292094	G	A	SNP	XYLT1	ENST00000261381	human	ensembl	69_37n	-1	known	silent	c.1264	p.L422	1.000	pfam_Glyco_trans_14	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	39	0	0	35	5	12.5	-	-	-	A	17292094	G	A	17292094	2	1	476	1	0	0	0	0	0	0	0	1	17560	991	35	4		4	XYLT1	16	17292094	Silent	SNP	G	TCGA-B6-A408-01A-12D-A243-09		17292094	73062659	35	43964										
CX3CL1	0	genome.wustl.edu	37	chr16	57413657	57413657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ccaggcatcatgcggcaaacGcgcaatcatgtaggtactgc	11	12	2	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	16	57413657	57413657	G	T	SNP	CX3CL1	ENST00000006053	human	ensembl	69_37n	1	known	missense	c.182	p.R61L	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210	64	0	0	16	12	42.86	-	-	-	T	57413657	G	T	57413657	3	4	476	1	0	0	0	0	1	0	0	0	4105	1087	38	3	188	3	CX3CL1	16	57413657	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	40121563	57413657	32941096	36	43965										
KCNH4	0	genome.wustl.edu	37	chr17	40322248	40322248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tgccgcgatgtaggcgctgcGccgtgatgggccgcccaccg	16	15	0	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	17	40322248	40322248	G	A	SNP	KCNH4	ENST00000264661	human	ensembl	69_37n	-1	known	missense	c.1267	p.R423C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558	53	0	0	22	9	29.03	-	-	-	A	40322248	G	A	40322248	3	1	476	1	0	0	0	0	1	0	0	0	8088	1087	38	1	1822	1	KCNH4	17	40322248	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09		40322248	40872962	37	43966										
RECQL5	0	genome.wustl.edu	37	chr17	73661205	73661205	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	agcagggagctgatagcataGggattttcctgcccctgtgg	14	9	0	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	17	73661205	73661205	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	silent	c.178	p.L60	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	47	0	0	26	13	33.33	-	-	-	A	73661205	G	A	73661205	2	1	476	1	0	0	0	0	0	0	0	1	13286	991	35	4		4	RECQL5	17	73661205	Silent	SNP	G	TCGA-B6-A408-01A-12D-A243-09	33338957	73661205	7534005	38	43967										
QRICH2	0	genome.wustl.edu	37	chr17	74300977	74300977	+	Frame_Shift_Del	DEL	G	G	-													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	tattaccaggaattgctcccGatctttgaatagcttctcta							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	17	74300977	74300977	G	-	DEL	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	frame_shift_del	c.82	p.R28fs	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	44	0	0	31	8	20.51	-	-	-	-	74300977	G	-	74300977	7	5	476	1	0	1	0	1	0	0	0	0	12963	1057	37	0	4981	0	QRICH2	17	74300977	Frame_Shift_Del	DEL	G	TCGA-B6-A408-01A-12D-A243-09	639772	74300977	6894233	39	43968										
PMEPA1	0	genome.wustl.edu	37	chr20	56284592	56284593	+	In_Frame_Ins	INS	-	-	CGG													0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gcaggagacattgggctgccINScggcggcggcggcggcggtg							TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	20	56284592	56284593	-	CGG	INS	PMEPA1	ENST00000341744	human	ensembl	69_37n	-1	known	in_frame_ins	c.47_46	p.16in_frame_insA	0.998:0.994	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225	8	0	0	3	3	50	-	-	-	CGG	56284593	-	CGG	56284592	7	5	476	1	0	1	1	0	0	0	0	0	12206	623	22	0	832	0	PMEPA1	20	56284592	In_Frame_Ins	INS	-	TCGA-B6-A408-01A-12D-A243-09		56284592	6740928	40	43969										
BRD1	0	genome.wustl.edu	37	chr22	50191767	50191767	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	gatccaaataatctggtaccTaattttagggaggaaaaaga	9	5	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	22	50191767	50191767	T	C	SNP	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	splice_site	c.1786-2	e5-2	1.000	-	-	-	no_errors	BRD1	HGNC	ENSG00000100425	62	0	0	27	3	10	-	-	-	C	50191767	T	C	50191767	5	2	476	1	0	0	0	0	0	0	1	0	1509	1536	53	5	1424	5	BRD1	22	50191767	Splice_Site	SNP	T	TCGA-B6-A408-01A-12D-A243-09		50191767	1112799	41	43970										
NHS	0	genome.wustl.edu	37	chrX	17705940	17705940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ccagcagcgcaacatcttccTcccagccacaaggccaccct	6	20	1	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	X	17705940	17705940	T	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.644	p.L215P	0.994	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	236	2	0.84	116	32	21.62	-	-	-	C	17705940	T	C	17705940	3	2	476	1	0	0	0	0	1	0	0	0	10483	1551	54	5	688	5	NHS	23	17705940	Missense_Mutation	SNP	T	TCGA-B6-A408-01A-12D-A243-09		17705940	137564620	42	43971			1	74		2	2	17	N	T_A	2.274115e-05
NHS	0	genome.wustl.edu	37	chrX	17705956	17705956	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	ttcctcccagccacaaggccAccctgcgtggaggagctgca	11	16	0	0			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	X	17705956	17705956	A	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.660	p.P220	0.039	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	217	1	0.46	94	40	29.85	-	-	-	C	17705956	A	C	17705956	2	2	476	1	0	0	0	0	0	0	0	1	10483	146	6	5		5	NHS	23	17705956	Silent	SNP	A	TCGA-B6-A408-01A-12D-A243-09	16	17705956	137564604	43	43972			1	74		2	2	17	N	T_A	2.274115e-05
MAP7D2	0	genome.wustl.edu	37	chrX	20043896	20043896	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	agggcttcctctccttgcggGccagcagcctgctgagccaa	12	15	1	1			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	X	20043896	20043896	G	A	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	silent	c.1182	p.G394	0.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	118	0	0	67	13	16.25	-	-	-	A	20043896	G	A	20043896	2	1	476	1	0	0	0	0	0	0	0	1	9339	1190	42	4		4	MAP7D2	23	20043896	Silent	SNP	G	TCGA-B6-A408-01A-12D-A243-09	2337940	20043896	135226664	44	43973										
AMOT	0	genome.wustl.edu	37	chrX	112058873	112058873	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.159090909090909	7	0.0173421864736646	3.37246963562753	4.57692307692308	3.23076923076923	0.0405594405594406	0.314818514818515	5	actcaggccaggttgggagaGacggtaatgatccccctggt	14	10	1	2			TCGA-B6-A408-01A-12D-A243-09	TCGA-B6-A408-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55539a81-a4a3-48d0-86d0-bc3a348762b0	4de56ac4-62c7-4512-8608-7888a58fb4cc	X	112058873	112058873	G	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1105	p.L369V	0.576	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	81	0	0	36	5	12.2	-	-	-	C	112058873	G	C	112058873	3	2	476	1	0	0	0	0	1	0	0	0	582	942	33	2	2189	2	AMOT	23	112058873	Missense_Mutation	SNP	G	TCGA-B6-A408-01A-12D-A243-09	92014977	112058873	43211687	45	43974										
CKS1B	0	genome.wustl.edu	37	chr1	154950513	154950513	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gctggtccctaaaacccatcTgatgtctgaatctgaatgga	9	10	3	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	1	154950513	154950513	T	G	SNP	CKS1B	ENST00000308987	human	ensembl	69_37n	1	known	missense	c.110	p.L37R	1.000	pfam_Cyclin-dep_kinase_reg-sub,superfamily_Cyclin-dep_kinase_reg-sub	pfam_Cyclin-dep_kinase_reg-sub,superfamily_Cyclin-dep_kinase_reg-sub,prints_Cyclin-dep_kinase_reg-sub	-	no_errors	CKS1B	HGNC	ENSG00000173207	118	0	0	170	32	15.84	-	-	-	G	154950513	T	G	154950513	3	3	477	1	0	0	0	0	1	0	0	0	3482	1580	55	5	116	5	CKS1B	1	154950513	Missense_Mutation	SNP	T	TCGA-B6-A409-01A-11D-A243-09		154950513	94300108	1	43975										
EFNA1	0	genome.wustl.edu	37	chr1	155103837	155103837	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tccggaatgaggactacaccAtacatgtgcagctgaatgac	10	10	0	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	1	155103837	155103837	A	G	SNP	EFNA1	ENST00000368407	human	ensembl	69_37n	1	known	missense	c.115	p.I39V	0.843	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA1	HGNC	ENSG00000169242	27	0	0	39	6	13.33	-	-	-	G	155103837	A	G	155103837	3	3	477	1	0	0	0	0	1	0	0	0	4985	217	8	5	121	5	EFNA1	1	155103837	Missense_Mutation	SNP	A	TCGA-B6-A409-01A-11D-A243-09	153324	155103837	94146784	2	43976										
PLA2R1	0	genome.wustl.edu	37	chr2	160901625	160901625	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	accgatttacctgcttgaatGcatttcttgagactctcact	6	11	2	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	2	160901625	160901625	G	T	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	nonsense	c.153	p.C51*	1.000	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	28	0	0	22	4	15.38	-	-	-	T	160901625	G	T	160901625	4	4	477	1	0	0	0	0	0	1	0	0	12084	1311	46	4	4362	4	PLA2R1	2	160901625	Nonsense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		160901625	82297748	3	43977										
DYTN	0	genome.wustl.edu	37	chr2	207530593	207530593	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	agtgtccctcacattttataCctgtaggtcccgtcttatct	6	12	3	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	2	207530593	207530593	C	A	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	splice_site	c.1140+1	e10+1	1.000	-	-	-	no_errors	DYTN	HGNC	ENSG00000232125	77	0	0	91	20	18.02	-	-	-	A	207530593	C	A	207530593	5	1	477	1	0	0	0	0	0	0	1	0	4896	521	18	4	607	4	DYTN	2	207530593	Splice_Site	SNP	C	TCGA-B6-A409-01A-11D-A243-09	46628968	207530593	35668780	4	43978										
VGLL4	0	genome.wustl.edu	37	chr3	11600885	11600885	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gggcagtgcgagaggttgcaGttgcgggcgccagccgaggc	20	10	0	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	3	11600885	11600885	G	C	SNP	VGLL4	ENST00000430365	human	ensembl	69_37n	-1	known	missense	c.540	p.N180K	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560	75	0	0	44	9	16.98	-	-	-	C	11600885	G	C	11600885	3	2	477	1	0	0	0	0	1	0	0	0	17258	1020	36	4	358	4	VGLL4	3	11600885	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		11600885	186421545	5	43979										
GABRG1	0	genome.wustl.edu	37	chr4	46066490	46066490	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	ccagtggacaggaatgttcaTccatgggaaagttatgaagc	12	7	1	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	4	46066490	46066490	T	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.593	p.D198G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	61	0	0	42	8	15.69	-	-	-	C	46066490	T	C	46066490	3	2	477	1	0	0	0	0	1	0	0	0	6220	1435	50	5	824	5	GABRG1	4	46066490	Missense_Mutation	SNP	T	TCGA-B6-A409-01A-11D-A243-09		46066490	145087786	6	43980										
HRH2	0	genome.wustl.edu	37	chr5	175111006	175111006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	cttcaccgcgtttgtgtaccGtgggctgagaggggatgatg	16	8	1	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	5	175111006	175111006	G	A	SNP	HRH2	ENST00000377291	human	ensembl	69_37n	1	known	missense	c.770	p.R257H	0.890	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,prints_7TM_GPCR_Rhodpsn,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH2	HGNC	ENSG00000113749	22	0	0	23	12	34.29	-	-	-	A	175111006	G	A	175111006	3	1	477	1	0	0	0	0	1	0	0	0	7407	1145	40	1	772	1	HRH2	5	175111006	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		175111006	5804254	7	43981										
MYLK4	0	genome.wustl.edu	37	chr6	2685633	2685633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gacgctgatctcgttcttcaCctcctcctgagaagcaggaa	9	13	3	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	6	2685633	2685633	C	T	SNP	MYLK4	ENST00000268446	human	ensembl	69_37n	-1	known	missense	c.442	p.V148M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949	40	0	0	49	11	18.33	-	-	-	T	2685633	C	T	2685633	3	4	477	1	0	0	0	0	1	0	0	0	10131	507	18	4	752	4	MYLK4	6	2685633	Missense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09		2685633	168429434	8	43982										
F13A1	0	genome.wustl.edu	37	chr6	6182294	6182294	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tgtttggtcacaattaatttCccaatgtgggtggcatccac	9	9	1	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	6	6182294	6182294	C	A	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	silent	c.1386	p.G462	0.998	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	45	0	0	51	24	32	-	-	-	A	6182294	C	A	6182294	2	1	477	1	0	0	0	0	0	0	0	1	5377	842	30	2		2	F13A1	6	6182294	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09	3496661	6182294	164932773	9	43983										
SOX4	0	genome.wustl.edu	37	chr6	21594936	21594936	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tggtgcaagaccccgagtggGcacatcaagcgacccatgaa	12	12	1	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	6	21594936	21594936	G	T	SNP	SOX4	ENST00000244745	human	ensembl	69_37n	1	known	silent	c.171	p.G57	1.000	superfamily_HMG_superfamily,pirsf_SOX-12/11/4a	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pirsf_SOX-12/11/4a,pfscan_HMG_superfamily	-	no_errors	SOX4	HGNC	ENSG00000124766	15	0	0	26	6	18.75	-	-	-	T	21594936	G	T	21594936	2	4	477	1	0	0	0	0	0	0	0	1	15042	1190	42	4		4	SOX4	6	21594936	Silent	SNP	G	TCGA-B6-A409-01A-11D-A243-09	15412642	21594936	149520131	10	43984										
MDN1	0	genome.wustl.edu	37	chr6	90388353	90388353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gtttaaagaggtctgacaaaGctcgctgtttttgcatgaga	11	6	1	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	6	90388353	90388353	G	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.12377	p.A4126D	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	52	0	0	48	7	12.73	-	-	-	T	90388353	G	T	90388353	3	4	477	1	0	0	0	0	1	0	0	0	9486	971	34	4	4525	4	MDN1	6	90388353	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09	68793417	90388353	80726714	11	43985										
FLNC	0	genome.wustl.edu	37	chr7	128495365	128495365	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	cgtctcactgtcaccagcctCcaggtttgtgcccagggtgg	12	14	2	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	7	128495365	128495365	C	T	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	silent	c.7248	p.L2416	0.998	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	24	0	0	25	6	19.35	-	-	-	T	128495365	C	T	128495365	2	4	477	1	0	0	0	0	0	0	0	1	5981	842	30	2		2	FLNC	7	128495365	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09		128495365	30643298	12	43986										
FRMD3	0	genome.wustl.edu	37	chr9	85881994	85881994	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	aacacattactgttgcagtgGttcaccatgtgcaattggag	10	8	1	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	9	85881994	85881994	G	C	SNP	FRMD3	ENST00000328788	human	ensembl	69_37n	-1	known	missense	c.99	p.N33K	1.000	NULL	NULL	-	no_errors	FRMD3	HGNC	ENSG00000172159	50	0	0	64	14	17.95	-	-	-	C	85881994	G	C	85881994	3	2	477	1	0	0	0	0	1	0	0	0	6099	1276	44	4		4	FRMD3	9	85881994	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		85881994	55331437	13	43987										
CUBN	0	genome.wustl.edu	37	chr10	16960643	16960643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	atagaatacttggccttgaaTcccacatgtgtggggctgtt	11	8	0	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	10	16960643	16960643	T	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.6978	p.G2326	0.842	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	32	0	0	28	20	41.67	-	-	-	C	16960643	T	C	16960643	2	2	477	1	0	0	0	0	0	0	0	1	4082	1422	50	5		5	CUBN	10	16960643	Silent	SNP	T	TCGA-B6-A409-01A-11D-A243-09		16960643	118574104	14	43988										
PGBD3	0	genome.wustl.edu	37	chr10	50724809	50724809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tacgggttgtacagttaggtCggcttttttccatttgcaaa	10	7	0	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	10	50724809	50724809	C	T	SNP	PGBD3	ENST00000374127	human	ensembl	69_37n	-1	known	missense	c.352	p.D118N	0.334	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251	86	0	0	58	63	52.07	-	-	-	T	50724809	C	T	50724809	3	4	477	1	0	0	0	0	1	0	0	0	11856	884	31	1	1433	1	PGBD3	10	50724809	Missense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09	33764166	50724809	84809938	15	43989										
KITLG	0	genome.wustl.edu	37	chr12	88928486	88928486	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	acctgagctgccagacatgaCggcatttttgttcatttatt	8	9	1	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	12	88928486	88928486	C	T	SNP	KITLG	ENST00000378535	human	ensembl	69_37n	-1	putative	silent	c.6	p.P2	0.002	superfamily_4_helix_cytokine-like_core	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130	58	0	0	36	27	42.86	-	-	-	T	88928486	C	T	88928486	2	4	477	1	0	0	0	0	0	0	0	1	8383	551	19	1		1	KITLG	12	88928486	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09		88928486	44923409	16	43990										
FGD6	0	genome.wustl.edu	37	chr12	95602823	95602823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	ggcgtatattttcatactccGgtgcacagaggcttgtaaca	10	9	1	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	12	95602823	95602823	G	A	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.2237	p.P746L	0.981	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	32	0	0	25	9	26.47	-	-	-	A	95602823	G	A	95602823	3	1	477	1	0	0	0	0	1	0	0	0	5883	1116	39	1	2135	1	FGD6	12	95602823	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09	6674337	95602823	38249072	17	43991										
COG3	0	genome.wustl.edu	37	chr13	46065553	46065553	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	ttgctttctgtcagataccaAcaactgctaaatgatatcca	5	10	2	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	13	46065553	46065553	A	G	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	silent	c.975	p.Q325	0.888	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	88	0	0	46	22	32.35	-	-	-	G	46065553	A	G	46065553	2	3	477	1	0	0	0	0	0	0	0	1	3689	40	2	5		5	COG3	13	46065553	Silent	SNP	A	TCGA-B6-A409-01A-11D-A243-09		46065553	69104325	18	43992										
OR10G2	0	genome.wustl.edu	37	chr14	22102916	22102916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	agaccaggaagaggaggcttCttagatttggggggtgagac	17	5	1	4			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	14	22102916	22102916	C	G	SNP	OR10G2	ENST00000542433	human	ensembl	69_37n	-1	known	missense	c.83	p.R28T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582	17	0	0	10	5	33.33	-	-	-	G	22102916	C	G	22102916	3	3	477	1	0	0	0	0	1	0	0	0	10972	913	32	2	852	2	OR10G2	14	22102916	Missense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09		22102916	85246624	19	43993										
OTX2	0	genome.wustl.edu	37	chr14	57270978	57270978	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	aagatgtctgggtaccgggtCttggcaaacagtgcttccag	13	9	2	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	14	57270978	57270978	C	T	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	silent	c.201	p.K67	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	18	0	0	22	6	21.43	-	-	-	T	57270978	C	T	57270978	2	4	477	1	0	0	0	0	0	0	0	1	11394	912	32	2		2	OTX2	14	57270978	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09	35168062	57270978	50078562	20	43994										
HOMER2	0	genome.wustl.edu	37	chr15	83561570	83561570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	caatctggaagacatgcgctCgggtggtgaagatgggctgt	16	7	1	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	15	83561570	83561570	C	T	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	missense	c.29	p.R10Q	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	57	0	0	38	6	13.64	-	-	-	T	83561570	C	T	83561570	3	4	477	1	0	0	0	0	1	0	0	0	7330	884	31	1	1067	1	HOMER2	15	83561570	Missense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09		83561570	18969822	21	43995										
CACNA1H	0	genome.wustl.edu	37	chr16	1251677	1251677	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tcacaggtgggctccttcttCatgatcaacctgtgcctggt	10	12	4	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	16	1251677	1251677	C	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.1227	p.F409L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	25	0	0	35	4	10.26	-	-	-	A	1251677	C	A	1251677	3	1	477	1	0	0	0	0	1	0	0	0	2570	825	29	2	1257	2	CACNA1H	16	1251677	Missense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09		1251677	89103076	22	43996										
TP53	0	genome.wustl.edu	37	chr17	7577525	7577526	+	Frame_Shift_Ins	INS	-	-	A													0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	cttccagtgtgatgatggtgINSaggatgggcctccggttcat							TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	17	7577525	7577526	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.756_755	p.T253fs	1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	48	0	0	28	15	34.88	-	-	-	A	7577526	-	A	7577525	7	5	477	1	0	1	1	0	0	0	0	0	16477	1277	45	0	534	0	TP53	17	7577525	Frame_Shift_Ins	INS	-	TCGA-B6-A409-01A-11D-A243-09		7577525	73617685	23	43997										
NMT1	0	genome.wustl.edu	37	chr17	43138787	43138787	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gggaacggccatgagcactgCagcgattgcgagaatgagga	16	8	0	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	17	43138787	43138787	C	A	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	nonsense	c.90	p.C30*	1.000	pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	42	0	0	12	10	45.45	-	-	-	A	43138787	C	A	43138787	4	1	477	1	0	0	0	0	0	1	0	0	10575	718	25	4	92	4	NMT1	17	43138787	Nonsense_Mutation	SNP	C	TCGA-B6-A409-01A-11D-A243-09	35561262	43138787	38056423	24	43998										
RYR1	0	genome.wustl.edu	37	chr19	38954140	38954140	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gagctctgggcgctaacccgCatcgagcagggctggaccta	14	13	1	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	19	38954140	38954140	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.2655	p.R885	0.986	pfam_Ryanodine_rcpt,prints_Ryan_recept	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	56	0	0	41	21	33.87	-	-	-	T	38954140	C	T	38954140	2	4	477	1	0	0	0	0	0	0	0	1	13854	697	25	4		4	RYR1	19	38954140	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09		38954140	20174843	25	43999										
RRBP1	0	genome.wustl.edu	37	chr20	17594817	17594817	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	aacagtaacttctttttccaAagaggaaactcagacagagg	8	8	2	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	20	17594817	17594817	A	G	SNP	RRBP1	ENST00000468428	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRBP1	HGNC	ENSG00000125844	19	0	0	13	8	38.1	-	-	-	G	17594817	A	G	17594817	1	3	477	0	1	0	0	0	0	0	0	0	13764	29	1	5		5	RRBP1	20	17594817	RNA	SNP	A	TCGA-B6-A409-01A-11D-A243-09		17594817	45430703	26	44000										
NKX2-2	0	genome.wustl.edu	37	chr20	21492969	21492969	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	cgctccagctcgtaggtctgCgccttggagaaaagcactcg	12	13	1	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	20	21492969	21492969	C	T	SNP	NKX2-2	ENST00000377142	human	ensembl	69_37n	-1	known	silent	c.414	p.A138	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820	87	0	0	76	9	10.59	-	-	-	T	21492969	C	T	21492969	2	4	477	1	0	0	0	0	0	0	0	1	10522	755	27	1		1	NKX2-2	20	21492969	Silent	SNP	C	TCGA-B6-A409-01A-11D-A243-09	3898152	21492969	41532551	27	44001										
ZSWIM3	0	genome.wustl.edu	37	chr20	44506183	44506183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	agcaaatccatcctttaaaaGgctcatgaaggaagccctgc	8	11	1	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	20	44506183	44506183	G	A	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	1	known	missense	c.986	p.R329K	0.007	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	27	0	0	27	12	30	-	-	-	A	44506183	G	A	44506183	3	1	477	1	0	0	0	0	1	0	0	0	18333	1000	35	4	992	4	ZSWIM3	20	44506183	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09	23013214	44506183	18519337	28	44002										
ZNF295	0	genome.wustl.edu	37	chr21	43413758	43413758	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tttctactttgacaaacaatGacacttctcttttgagaact	4	9	2	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	21	43413758	43413758	G	A	SNP	ZNF295	ENST00000310826	human	ensembl	69_37n	-1	known	silent	c.447	p.V149	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF295	HGNC	ENSG00000173276	55	0	0	48	24	33.33	-	-	-	A	43413758	G	A	43413758	2	1	477	1	0	0	0	0	0	0	0	1	17923	1277	45	2		2	ZNF295	21	43413758	Silent	SNP	G	TCGA-B6-A409-01A-11D-A243-09		43413758	4716137	29	44003										
SEPT5	0	genome.wustl.edu	37	chr22	19708174	19708174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	cttgtccccagtgagatccgGaagctgaaggagcgggtgag	16	9	0	3			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	22	19708174	19708174	G	A	SNP	SEPT5	ENST00000413258	human	ensembl	69_37n	1	novel	missense	c.196	p.E66K	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_start_codon:pseudogene:no_stop_codon	SEPT5	HGNC	ENSG00000184702	38	0	0	38	24	38.71	-	-	-	A	19708174	G	A	19708174	3	1	477	1	0	0	0	0	1	0	0	0	14155	1161	41	2	626	2	SEPT5	22	19708174	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		19708174	31596392	30	44004										
BCOR	0	genome.wustl.edu	37	chrX	39937175	39937175	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	tcccatacaggggggttgctGagagcatgtcgtcttctggg	15	9	2	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	X	39937175	39937175	G	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	nonsense	c.8	p.S3*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	35	0	0	21	13	38.24	-	-	-	C	39937175	G	C	39937175	4	2	477	1	0	0	0	0	0	1	0	0	1390	1294	45	2	5315	2	BCOR	23	39937175	Nonsense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09		39937175	115333385	31	44005										
ARHGEF9	0	genome.wustl.edu	37	chrX	62894024	62894024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	catttctcatgacagccaaaGcagctgccacatacctgtag	7	13	1	1			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	X	62894024	62894024	G	A	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.818	p.A273V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	31	0	0	35	24	40.68	-	-	-	A	62894024	G	A	62894024	3	1	477	1	0	0	0	0	1	0	0	0	914	971	34	4	752	4	ARHGEF9	23	62894024	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09	22956849	62894024	92376536	32	44006										
IGSF1	0	genome.wustl.edu	37	chrX	130409566	130409566	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	accagatatattggtgatggGgaatgccccgtcattactgg	12	8	1	2			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	X	130409566	130409566	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3085	p.P1029T	0.081	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	71	0	0	50	24	32.43	-	-	-	T	130409566	G	T	130409566	3	4	477	1	0	0	0	0	1	0	0	0	7650	1232	43	4	960	4	IGSF1	23	130409566	Missense_Mutation	SNP	G	TCGA-B6-A409-01A-11D-A243-09	67515542	130409566	24860994	33	44007										
CXorf40B	0	genome.wustl.edu	37	chrX	149100974	149100974	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.563863862959083	1.55784650630011	3.50515463917526	1.00147275405007	1	1	0	gcattgcaaagtttccccaaTgtcaacgagtcctgtacaca	7	12	1	0			TCGA-B6-A409-01A-11D-A243-09	TCGA-B6-A409-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61f61966-d139-4a02-9c5c-5598d5322407	d061e421-1f2b-4e80-8765-38016a91cbda	X	149100974	149100974	T	A	SNP	CXorf40B	ENST00000355203	human	ensembl	69_37n	-1	known	missense	c.265	p.I89F	0.990	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40B	HGNC	ENSG00000197021	62	0	0	46	16	25.81	-	-	-	A	149100974	T	A	149100974	3	1	477	1	0	0	0	0	1	0	0	0	4140	1464	51	5	215	5	CXorf40B	23	149100974	Missense_Mutation	SNP	T	TCGA-B6-A409-01A-11D-A243-09	18691408	149100974	6169586	34	44008										
POMGNT1	0	genome.wustl.edu	37	chr1	46659149	46659149	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cttcacatttcacagcccttGcctgggcggtctcccttgcc	8	17	3	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	1	46659149	46659149	G	T	SNP	POMGNT1	ENST00000477114	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998	65	0	0	30	4	11.76	-	-	-	T	46659149	G	T	46659149	1	4	478	0	1	0	0	0	0	0	0	0	12317	1334	46	4		4	POMGNT1	1	46659149	RNA	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		46659149	202591472	1	44009										
COL24A1	0	genome.wustl.edu	37	chr1	86210401	86210401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tctttgcagattcgtgctggGttatctcgtgtgccaagagg	13	8	2	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	1	86210401	86210401	G	T	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.4620	p.N1540K	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	68	0	0	32	4	11.11	-	-	-	T	86210401	G	T	86210401	3	4	478	1	0	0	0	0	1	0	0	0	3713	1252	44	4	540	4	COL24A1	1	86210401	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	39551252	86210401	163040220	2	44010										
HMGCS2	0	genome.wustl.edu	37	chr1	120301760	120301760	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ccttgcttccactgattctgGatttttttacggtatgatgt	8	8	1	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	1	120301760	120301760	G	T	SNP	HMGCS2	ENST00000369406	human	ensembl	69_37n	-1	known	silent	c.831	p.I277	0.999	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240	44	0	0	28	24	46.15	-	-	-	T	120301760	G	T	120301760	2	4	478	1	0	0	0	0	0	0	0	1	7284	1164	41	2		2	HMGCS2	1	120301760	Silent	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	34091359	120301760	128948861	3	44011										
HSD17B7	0	genome.wustl.edu	37	chr1	162767619	162767619	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	attcatatgttctccacagcTgaaggcctgctgacccaggg	10	12	2	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	1	162767619	162767619	T	C	SNP	HSD17B7	ENST00000367913	human	ensembl	69_37n	1	known	nonstop	c.334	p.*112R	0.997	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196	143	0	0	118	78	39.59	-	-	-	C	162767619	T	C	162767619	4	2	478	1	0	0	0	0	0	0	0	0	7439	1567	55	5	374	5	HSD17B7	1	162767619	Nonstop_Mutation	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	42465859	162767619	86483002	4	44012										
TP53I3	0	genome.wustl.edu	37	chr2	24303884	24303884	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgcatggattagcacatagtCtccagcctgaacatttcctg	8	11	1	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	2	24303884	24303884	C	G	SNP	TP53I3	ENST00000238721	human	ensembl	69_37n	-1	known	missense	c.424	p.D142H	0.783	superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129	63	0	0	38	12	24	-	-	-	G	24303884	C	G	24303884	3	3	478	1	0	0	0	0	1	0	0	0	16483	913	32	2	586	2	TP53I3	2	24303884	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		24303884	218895489	5	44013										
ACOXL	0	genome.wustl.edu	37	chr2	111744695	111744695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ctttgcacaggttgtggggcGggaactgctggcccaataca	14	10	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	2	111744695	111744695	G	A	SNP	ACOXL	ENST00000439055	human	ensembl	69_37n	1	known	missense	c.1070	p.R357Q	0.679	pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	95	0	0	64	19	22.89	-	-	-	A	111744695	G	A	111744695	3	1	478	1	0	0	0	0	1	0	0	0	161	1116	39	1	1116	1	ACOXL	2	111744695	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	87440811	111744695	131454678	6	44014										
SCN2A	0	genome.wustl.edu	37	chr2	166246184	166246184	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ctcattgataaactgaatgaGaattcaactccagagaaaac	6	8	2	4			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	2	166246184	166246184	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	silent	c.5868	p.E1956	0.990	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	44	0	0	27	15	35.71	-	-	-	A	166246184	G	A	166246184	2	1	478	1	0	0	0	0	0	0	0	1	14004	933	33	2		2	SCN2A	2	166246184	Silent	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	54501489	166246184	76953189	7	44015										
CPS1	0	genome.wustl.edu	37	chr2	211521327	211521327	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ccactctgatgctgcccacaCaaaccatcagccaaggggcc	8	17	2	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	2	211521327	211521327	C	A	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.3655	p.Q1219K	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	64	0	0	40	14	25.93	-	-	-	A	211521327	C	A	211521327	3	1	478	1	0	0	0	0	1	0	0	0	3853	479	17	4	3777	4	CPS1	2	211521327	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	45275143	211521327	31678046	8	44016										
OSBPL10	0	genome.wustl.edu	37	chr3	31871637	31871637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	acaccgggggcccccacactGaggtgtctctggctacaggg	14	14	1	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	3	31871637	31871637	G	A	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	silent	c.624	p.L208	0.970	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	80	0	0	52	21	28.77	-	-	-	A	31871637	G	A	31871637	2	1	478	1	0	0	0	0	0	0	0	1	11348	1277	45	2		2	OSBPL10	3	31871637	Silent	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		31871637	166150793	9	44017										
ZMYND10	0	genome.wustl.edu	37	chr3	50380800	50380800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gccaccacagccactctgggCcaccagcagggtcagtttgc	11	16	2	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	3	50380800	50380800	C	T	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	missense	c.448	p.A150T	0.998	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	61	0	0	35	10	22.22	-	-	-	T	50380800	C	T	50380800	3	4	478	1	0	0	0	0	1	0	0	0	17801	739	26	4	906	4	ZMYND10	3	50380800	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	18509163	50380800	147641630	10	44018										
MRPS22	0	genome.wustl.edu	37	chr3	139062975	139062975	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ccagccctggcacggtggccTgctccaaccgctaccttgct	10	18	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	3	139062975	139062975	T	C	SNP	MRPS22	ENST00000310776	human	ensembl	69_37n	1	known	missense	c.107	p.L36P	0.002	NULL	pfam_Ribosomal_S22_mit	-	no_errors	MRPS22	HGNC	ENSG00000175110	67	0	0	49	18	26.87	-	-	-	C	139062975	T	C	139062975	3	2	478	1	0	0	0	0	1	0	0	0	9905	1580	55	5	109	5	MRPS22	3	139062975	Missense_Mutation	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	88682175	139062975	58959455	11	44019										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	53	0	0	50	40	44.44	-	-	-	A	178936082	G	A	178936082	3	1	478	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	39873107	178936082	19086348	12	44020										
CPEB2	0	genome.wustl.edu	37	chr4	15004655	15004655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cggccacggagaaactccccGaccaccaccccggcggcggc	12	20	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	4	15004655	15004655	G	A	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	missense	c.358	p.D120N	0.997	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	8	0	0	3	5	62.5	-	-	-	A	15004655	G	A	15004655	3	1	478	1	0	0	0	0	1	0	0	0	3831	1058	37	1	360	1	CPEB2	4	15004655	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		15004655	176149621	13	44021										
ANK2	0	genome.wustl.edu	37	chr4	114209638	114209638	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	agcaaatgttaacgcaaaaaCcaaggtaaagtacttgtggt	9	6	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	4	114209638	114209638	C	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2273	p.T758N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	59	0	0	40	18	31.03	-	-	-	A	114209638	C	A	114209638	3	1	478	1	0	0	0	0	1	0	0	0	621	507	18	4	2376	4	ANK2	4	114209638	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	99204983	114209638	76944638	14	44022										
SLC45A2	0	genome.wustl.edu	37	chr5	33964088	33964088	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ccagatgggcccagtctataGcacccaaaaggtaacccagg	10	13	1	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	5	33964088	33964088	G	C	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.596	p.A199G	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	32	0	0	44	10	18.52	-	-	-	C	33964088	G	C	33964088	3	2	478	1	0	0	0	0	1	0	0	0	14730	971	34	4	1031	4	SLC45A2	5	33964088	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		33964088	146951172	15	44023										
ERBB2IP	0	genome.wustl.edu	37	chr5	65342343	65342343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ctgagaacttgaagcatattGttaaccatgatgatgttttt	8	5	0	4			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	5	65342343	65342343	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.1765	p.V589I	0.875	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	42	0	0	20	20	50	-	-	-	A	65342343	G	A	65342343	3	1	478	1	0	0	0	0	1	0	0	0	5244	1377	48	4	1827	4	ERBB2IP	5	65342343	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	31378255	65342343	115572917	16	44024										
FAM81B	0	genome.wustl.edu	37	chr5	94784045	94784045	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tagagaatttcattaacacaCagaaacaggaaacacaacta	5	8	1	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	5	94784045	94784045	C	G	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.1102	p.Q368E	0.017	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	18	0	0	18	9	33.33	-	-	-	G	94784045	C	G	94784045	3	3	478	1	0	0	0	0	1	0	0	0	5674	479	17	4	1136	4	FAM81B	5	94784045	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	29441702	94784045	86131215	17	44025										
ZNF608	0	genome.wustl.edu	37	chr5	123983690	123983690	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ggttcacggtgatgggctctCccataattgtgggctttggt	14	8	2	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	5	123983690	123983690	C	A	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.2387	p.G796V	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	156	0	0	133	41	23.56	-	-	-	A	123983690	C	A	123983690	3	1	478	1	0	0	0	0	1	0	0	0	18130	855	30	2	2175	2	ZNF608	5	123983690	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	29199645	123983690	56931570	18	44026										
SHROOM1	0	genome.wustl.edu	37	chr5	132159145	132159145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cctggcccacgcttgtgcctCcccctgcagccgctcctgct	9	21	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	5	132159145	132159145	C	T	SNP	SHROOM1	ENST00000378679	human	ensembl	69_37n	-1	known	missense	c.2023	p.E675K	0.000	pfam_ASD2	pfam_ASD2,pfam_ASD1	-	no_errors	SHROOM1	HGNC	ENSG00000164403	37	0	0	27	7	20.59	-	-	-	T	132159145	C	T	132159145	3	4	478	1	0	0	0	0	1	0	0	0	14382	864	30	2	543	2	SHROOM1	5	132159145	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	8175455	132159145	48756115	19	44027										
GUCA1A	0	genome.wustl.edu	37	chr6	42146547	42146547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tcttccctcccaggccattcGcgccattaacccctgcagcg	7	19	1	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	6	42146547	42146547	G	A	SNP	GUCA1A	ENST00000053469	human	ensembl	69_37n	1	known	missense	c.359	p.R120H	1.000	pfam_SPARC/Testican_Ca-bd-dom,pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1A	HGNC	ENSG00000048545	56	0	0	42	15	26.32	-	-	-	A	42146547	G	A	42146547	3	1	478	1	0	0	0	0	1	0	0	0	6939	1087	38	1	369	1	GUCA1A	6	42146547	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		42146547	128968520	20	44028										
FNDC1	0	genome.wustl.edu	37	chr6	159653589	159653589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gtccccgtccagcgttctccGcgacagaagctctgtgcacc	10	17	2	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	6	159653589	159653589	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.2045	p.R682H	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	38	0	0	34	6	15	-	-	-	A	159653589	G	A	159653589	3	1	478	1	0	0	0	0	1	0	0	0	6014	1087	38	1	2087	1	FNDC1	6	159653589	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	117507042	159653589	11461478	21	44029										
FLNC	0	genome.wustl.edu	37	chr7	128496900	128496900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gaagtcccttcaagatccgcGttggggagcagagccaggct	14	11	1	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	7	128496900	128496900	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.7486	p.V2496I	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	67	0	0	43	30	40.54	-	-	-	A	128496900	G	A	128496900	3	1	478	1	0	0	0	0	1	0	0	0	5981	1145	40	1	7664	1	FLNC	7	128496900	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		128496900	30641763	22	44030										
COL14A1	0	genome.wustl.edu	37	chr8	121259909	121259909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ggaatggtataaccggttgcGcattacgtgggaccccccat	12	11	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	8	121259909	121259909	G	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.2537	p.R846L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	60	0	0	44	16	26.67	-	-	-	T	121259909	G	T	121259909	3	4	478	1	0	0	0	0	1	0	0	0	3701	1087	38	3	2615	3	COL14A1	8	121259909	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		121259909	25104113	23	44031										
SLC35D2	0	genome.wustl.edu	37	chr9	99083270	99083270	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ccctagaagagcagctggggCtccacctaccgagtcccagt	11	15	0	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	9	99083270	99083270	C	G	SNP	SLC35D2	ENST00000490599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SLC35D2	HGNC	ENSG00000130958	29	0	0	5	18	78.26	-	-	-	G	99083270	C	G	99083270	1	3	478	0	1	0	0	0	0	0	0	0	14671	812	28	4		4	SLC35D2	9	99083270	RNA	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		99083270	42130161	24	44032										
GPAM	0	genome.wustl.edu	37	chr10	113921450	113921450	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgtgtctgtagaggagcaggCaagccacaatgtgtgtggac	15	7	1	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	10	113921450	113921450	C	A	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.1469	p.C490F	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	54	0	0	22	18	45	-	-	-	A	113921450	C	A	113921450	3	1	478	1	0	0	0	0	1	0	0	0	6638	710	25	4	1049	4	GPAM	10	113921450	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		113921450	21613297	25	44033										
BAG3	0	genome.wustl.edu	37	chr10	121431832	121431832	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tcggccagcctgccttcctcCggcaggagcagcctgggcag	14	16	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	10	121431832	121431832	C	T	SNP	BAG3	ENST00000369085	human	ensembl	69_37n	1	known	silent	c.573	p.S191	0.000	NULL	pfam_BAG_domain,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_Rsp5_WWP	-	no_errors	BAG3	HGNC	ENSG00000151929	68	0	0	51	26	33.77	-	-	-	T	121431832	C	T	121431832	2	4	478	1	0	0	0	0	0	0	0	1	1292	639	23	1		1	BAG3	10	121431832	Silent	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	7510382	121431832	14102915	26	44034										
WNK1	0	genome.wustl.edu	37	chr12	1009694	1009694	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ttgcacccccagcagaccctCcaccctcctggcaacatccc	5	22	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	12	1009694	1009694	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.7995	p.L2665	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	38	0	0	34	10	22.73	-	-	-	T	1009694	C	T	1009694	2	4	478	1	0	0	0	0	0	0	0	1	17474	842	30	2		2	WNK1	12	1009694	Silent	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		1009694	132842201	27	44035										
GUCY2C	0	genome.wustl.edu	37	chr12	14839128	14839128	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tggagtatgtacatgagggcCctatgaggacacagcccatc	12	10	0	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	12	14839128	14839128	C	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.362	p.G121V	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	47	0	0	47	18	27.69	-	-	-	A	14839128	C	A	14839128	3	1	478	1	0	0	0	0	1	0	0	0	6947	623	22	4	2959	4	GUCY2C	12	14839128	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	13829434	14839128	119012767	28	44036										
LTA4H	0	genome.wustl.edu	37	chr12	96421311	96421311	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	agaagattttggagaggtctCaaaagaaatttctataacaa	8	4	2	4			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	12	96421311	96421311	C	T	SNP	LTA4H	ENST00000228740	human	ensembl	69_37n	-1	known	missense	c.322	p.E108K	1.000	pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	-	no_errors	LTA4H	HGNC	ENSG00000111144	56	0	0	28	15	34.88	-	-	-	T	96421311	C	T	96421311	3	4	478	1	0	0	0	0	1	0	0	0	9135	835	29	2	1581	2	LTA4H	12	96421311	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	81582183	96421311	37430584	29	44037										
TDG	0	genome.wustl.edu	37	chr12	104380594	104380594	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gatcactcaagcccaggagtTtgaggctgcaaagagctgtg	13	9	2	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	12	104380594	104380594	T	C	SNP	TDG	ENST00000536395	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.827	-	-	-	no_errors	TDG	HGNC	ENSG00000139372	8	0	0	3	7	70	-	-	-	C	104380594	T	C	104380594	1	2	478	0	1	0	0	0	0	0	0	0	15820	1856	64	5		5	TDG	12	104380594	RNA	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	7959283	104380594	29471301	30	44038										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20244477	20244477	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tacaagctgtagttctgaatGataaatttcagcttcctgtt	7	7	2	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	13	20244477	20244477	G	A	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.2431	p.D811N	1.000	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	154	0	0	92	38	29.23	-	-	-	A	20244477	G	A	20244477	3	1	478	1	0	0	0	0	1	0	0	0	9799	1290	45	2	2477	2	MPHOSPH8	13	20244477	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		20244477	94925401	31	44039										
EBPL	0	genome.wustl.edu	37	chr13	50235136	50235136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cttcactgaactggtttcttTctgatgcattttcttgagtt	7	8	4	3			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	13	50235136	50235136	T	C	SNP	EBPL	ENST00000242827	human	ensembl	69_37n	-1	known	missense	c.589	p.K197E	0.000	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179	54	0	0	46	11	19.3	-	-	-	C	50235136	T	C	50235136	3	2	478	1	0	0	0	0	1	0	0	0	4922	1792	62	5	35	5	EBPL	13	50235136	Missense_Mutation	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	29990659	50235136	64934742	32	44040										
OR4K15	0	genome.wustl.edu	37	chr14	20444046	20444046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tcttttgatgcctgcctggcCcagattttctttgttcatct	7	11	4	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	14	20444046	20444046	C	T	SNP	OR4K15	ENST00000305051	human	ensembl	69_37n	1	known	silent	c.369	p.A123	0.011	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488	143	0	0	112	60	34.88	-	-	-	T	20444046	C	T	20444046	2	4	478	1	0	0	0	0	0	0	0	1	11143	610	22	4		4	OR4K15	14	20444046	Silent	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		20444046	86905494	33	44041										
BNC1	0	genome.wustl.edu	37	chr15	83935703	83935703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ggtccagtaggatttttaggCgaacggggatggcctgggtc	17	7	0	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	15	83935703	83935703	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.320	p.R107H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	92	0	0	71	27	27.55	-	-	-	T	83935703	C	T	83935703	3	4	478	1	0	0	0	0	1	0	0	0	1479	768	27	1	2676	1	BNC1	15	83935703	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		83935703	18595689	34	44042										
FURIN	0	genome.wustl.edu	37	chr15	91424679	91424679	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gcctcatgtgccacatgccaGgggccggccctgacagactg	13	15	1	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	15	91424679	91424679	G	C	SNP	FURIN	ENST00000268171	human	ensembl	69_37n	1	known	missense	c.1956	p.Q652H	0.998	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	23	0	0	27	11	28.95	-	-	-	C	91424679	G	C	91424679	3	2	478	1	0	0	0	0	1	0	0	0	6148	991	35	4	2014	4	FURIN	15	91424679	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	7488976	91424679	11106713	35	44043										
PAQR4	0	genome.wustl.edu	37	chr16	3021843	3021843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	ctttgactactggggcaactCccaccagatcatgcacctgc	8	15	1	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	16	3021843	3021843	C	T	SNP	PAQR4	ENST00000318782	human	ensembl	69_37n	1	known	missense	c.716	p.S239F	0.998	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR4	HGNC	ENSG00000162073	21	0	0	27	7	20.59	-	-	-	T	3021843	C	T	3021843	3	4	478	1	0	0	0	0	1	0	0	0	11510	855	30	2	726	2	PAQR4	16	3021843	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		3021843	87332910	36	44044										
SRL	0	genome.wustl.edu	37	chr16	4257368	4257368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	agctgggccgggctccccctGgtcctcggtgccctcactgg	14	17	1	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	16	4257368	4257368	G	T	SNP	SRL	ENST00000572111	human	ensembl	69_37n	-1	known	missense	c.799	p.Q267K	0.000	NULL	NULL	-	no_errors	SRL	HGNC	ENSG00000185739	97	0	0	180	24	11.76	-	-	-	T	4257368	G	T	4257368	3	4	478	1	0	0	0	0	1	0	0	0	15241	1363	47	4		4	SRL	16	4257368	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	1235525	4257368	86097385	37	44045										
CDH1	0	genome.wustl.edu	37	chr16	68849577	68849577	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgcctcctgaaaagagagtgGaagtgtccgaggactttggc	14	8	0	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	16	68849577	68849577	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1480	p.E494*	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	98	0	0	38	26	40.62	-	-	-	T	68849577	G	T	68849577	4	4	478	1	0	0	0	0	0	1	0	0	3124	1175	41	2	1518	2	CDH1	16	68849577	Nonsense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	64592209	68849577	21505176	38	44046										
OR1E2	0	genome.wustl.edu	37	chr17	3336292	3336292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	agtgtacatcatagccatgaCagtgtcctttagagtagaac	9	8	1	3			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	3336292	3336292	C	A	SNP	OR1E2	ENST00000248384	human	ensembl	69_37n	-1	known	missense	c.844	p.V282F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1E2	HGNC	ENSG00000127780	80	0	0	52	18	25.71	-	-	-	A	3336292	C	A	3336292	3	1	478	1	0	0	0	0	1	0	0	0	11028	478	17	4	130	4	OR1E2	17	3336292	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		3336292	77858918	39	44047										
CORO6	0	genome.wustl.edu	37	chr17	27949760	27949760	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cgaatcctctgcggaaggggCccgagtgcgtagggggccga	18	11	1	0			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	27949760	27949760	C	T	SNP	CORO6	ENST00000577909	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CORO6	HGNC	ENSG00000167549	18	0	0	12	5	29.41	-	-	-	T	27949760	C	T	27949760	1	4	478	0	1	0	0	0	0	0	0	0	3788	754	26	4		4	CORO6	17	27949760	RNA	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	24613468	27949760	53245450	40	44048										
ABCA10	0	genome.wustl.edu	37	chr17	67151207	67151207	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgatggctattttcttctttCttgttgaaaagcaacttttc	6	7	3	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	67151207	67151207	C	G	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.3647	p.R1216T	0.042	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	78	0	0	64	20	23.81	-	-	-	G	67151207	C	G	67151207	3	3	478	1	0	0	0	0	1	0	0	0	29	913	32	2	1024	2	ABCA10	17	67151207	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	39201447	67151207	14044003	41	44049										
SEPT9	0	genome.wustl.edu	37	chr17	75494630	75494630	+	Missense_Mutation	SNP	A	A	G													0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	acatgcagaacatcaaggacAtcaccagcagcatccacttc							TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	75494630	75494630	A	G	SNP	SEPT9	ENST00000427177	human	ensembl	69_37n	1	known	missense	c.1651	p.I551V	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	-	no_errors	SEPT9	HGNC	ENSG00000184640	25	0	0	15	5	25	-	-	-	G	75494630	A	G	75494630	3	3	478	1	0	0	0	0	1	0	0	0	14159	217	8	5	2171	5	SEPT9	17	75494630	Missense_Mutation	SNP	A	TCGA-B6-A40B-01A-11D-A23C-09	8343423	75494630	5700580	42	44050	355	3								
SEPT9	0	genome.wustl.edu	37	chr17	75494631	75494631	+	Missense_Mutation	SNP	T	T	A													0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	catgcagaacatcaaggacaTcaccagcagcatccacttcg							TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	75494631	75494631	T	A	SNP	SEPT9	ENST00000427177	human	ensembl	69_37n	1	known	missense	c.1652	p.I551N	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	-	no_errors	SEPT9	HGNC	ENSG00000184640	26	0	0	15	5	25	-	-	-	A	75494631	T	A	75494631	3	1	478	1	0	0	0	0	1	0	0	0	14159	1435	50	5	2172	5	SEPT9	17	75494631	Missense_Mutation	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	1	75494631	5700579	43	44051	355	3								
SEPT9	0	genome.wustl.edu	37	chr17	75494634	75494634	+	Missense_Mutation	SNP	C	C	T													0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gcagaacatcaaggacatcaCcagcagcatccacttcgagg							TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	75494634	75494634	C	T	SNP	SEPT9	ENST00000427177	human	ensembl	69_37n	1	known	missense	c.1655	p.T552I	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1	-	no_errors	SEPT9	HGNC	ENSG00000184640	28	0	0	17	6	26.09	-	-	-	T	75494634	C	T	75494634	3	4	478	1	0	0	0	0	1	0	0	0	14159	507	18	4	2175	4	SEPT9	17	75494634	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	3	75494634	5700576	44	44052	355	3								
BAHCC1	0	genome.wustl.edu	37	chr17	79414864	79414864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	cagcggcagaggagtgagagGactgtgccaggtaagcccgg	18	9	0	2			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	17	79414864	79414864	G	A	SNP	BAHCC1	ENST00000571813	human	ensembl	69_37n	1	putative	missense	c.3701	p.G1234E	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BAHCC1	HGNC	ENSG00000171282	56	0	0	43	16	27.12	-	-	-	A	79414864	G	A	79414864	3	1	478	1	0	0	0	0	1	0	0	0	1300	1165	41	2	3839	2	BAHCC1	17	79414864	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	3920230	79414864	1780346	45	44053										
S1PR4	0	genome.wustl.edu	37	chr19	3179502	3179502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	aggccagcgggcagaaggccCcacgcccagcggcccgccgc	15	19	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	19	3179502	3179502	C	T	SNP	S1PR4	ENST00000246115	human	ensembl	69_37n	1	known	missense	c.712	p.P238S	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG6_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_EDG6_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	S1PR4	HGNC	ENSG00000125910	125	0	0	88	33	27.27	-	-	-	T	3179502	C	T	3179502	3	4	478	1	0	0	0	0	1	0	0	0	13882	623	22	4	714	4	S1PR4	19	3179502	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		3179502	55949481	46	44054										
CCDC97	0	genome.wustl.edu	37	chr19	41822480	41822480	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	gccgcctgcctgtttgcagcCagcagcagggtgaacccgac	13	15	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	19	41822480	41822480	C	G	SNP	CCDC97	ENST00000269967	human	ensembl	69_37n	1	known	missense	c.238	p.Q80E	1.000	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039	40	0	0	36	10	21.74	-	-	-	G	41822480	C	G	41822480	3	3	478	1	0	0	0	0	1	0	0	0	2902	595	21	4	244	4	CCDC97	19	41822480	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	38642978	41822480	17306503	47	44055										
ASXL1	0	genome.wustl.edu	37	chr20	30954253	30954253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgcaggtcatagaggcagaaGgactaaaggaaatgaggttt	14	4	1	3			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	20	30954253	30954253	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.124	p.G42R	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	106	0	0	80	39	32.77	-	-	-	A	30954253	G	A	30954253	3	1	478	1	0	0	0	0	1	0	0	0	1070	1001	35	4	130	4	ASXL1	20	30954253	Missense_Mutation	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09		30954253	32071267	48	44056										
SLC13A3	0	genome.wustl.edu	37	chr20	45192149	45192149	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	aaggagcagccgactgtgccCggaatcatcagatacagggg	14	10	2	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	20	45192149	45192149	C	T	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	silent	c.1536	p.P512	0.167	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	23	0	0	30	15	33.33	-	-	-	T	45192149	C	T	45192149	2	4	478	1	0	0	0	0	0	0	0	1	14482	639	23	1		1	SLC13A3	20	45192149	Silent	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09	14237896	45192149	17833371	49	44057										
MID1	0	genome.wustl.edu	37	chrX	10535364	10535364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	tgttctgtagggtgacgttgCgcttgagcccgtctagacct	13	10	2	3			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	X	10535364	10535364	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.224	p.R75H	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	91	0	0	69	33	32.35	-	-	-	T	10535364	C	T	10535364	3	4	478	1	0	0	0	0	1	0	0	0	9647	768	27	1	1815	1	MID1	23	10535364	Missense_Mutation	SNP	C	TCGA-B6-A40B-01A-11D-A23C-09		10535364	144735196	50	44058										
HSD17B10	0	genome.wustl.edu	37	chrX	53461167	53461167	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	taccaggcctacataagcatGaccctttccctcgaaaccga	6	15	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	X	53461167	53461167	G	T	SNP	HSD17B10	ENST00000495986	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B10	HGNC	ENSG00000072506	33	0	0	32	18	36	-	-	-	T	53461167	G	T	53461167	1	4	478	0	1	0	0	0	0	0	0	0	7430	1305	45	2		2	HSD17B10	23	53461167	RNA	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	42925803	53461167	101809393	51	44059										
NLGN3	0	genome.wustl.edu	37	chrX	70389455	70389455	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	agcaacgagaatgcccagggGtcctggaacggggaccagga	16	10	0	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	X	70389455	70389455	G	T	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	silent	c.2055	p.G685	0.911	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	48	0	0	37	19	33.93	-	-	-	T	70389455	G	T	70389455	2	4	478	1	0	0	0	0	0	0	0	1	10535	1248	44	4		4	NLGN3	23	70389455	Silent	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	16928288	70389455	84881105	52	44060										
NKRF	0	genome.wustl.edu	37	chrX	118723826	118723826	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	caacagctcctttcttcaagTtgttaatgacagttggctgg	9	9	2	1			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	X	118723826	118723826	T	A	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	missense	c.1607	p.N536I	1.000	NULL	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	40	0	0	32	9	21.95	-	-	-	A	118723826	T	A	118723826	3	1	478	1	0	0	0	0	1	0	0	0	10519	1725	60	5	514	5	NKRF	23	118723826	Missense_Mutation	SNP	T	TCGA-B6-A40B-01A-11D-A23C-09	48334371	118723826	36546734	53	44061										
FAM50A	0	genome.wustl.edu	37	chrX	153678580	153678580	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	8	0.107646161578917	2.16917293233083	2.47905477980666	2.08240601503759	0.153434800493624	0.661053898161957	0	catgcaggcaaggtggtgctGaggagctggtacgagaagaa	17	6	0	3			TCGA-B6-A40B-01A-11D-A23C-09	TCGA-B6-A40B-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4879bc18-31b9-4cd6-967c-2891a1fd416e	dc05c74e-86e4-4b00-9824-a7c8c69acf7c	X	153678580	153678580	G	A	SNP	FAM50A	ENST00000393600	human	ensembl	69_37n	1	known	silent	c.924	p.L308	0.998	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50A	HGNC	ENSG00000071859	92	0	0	67	43	39.09	-	-	-	A	153678580	G	A	153678580	2	1	478	1	0	0	0	0	0	0	0	1	5623	1277	45	2		2	FAM50A	23	153678580	Silent	SNP	G	TCGA-B6-A40B-01A-11D-A23C-09	34954754	153678580	1591980	54	44062										
SPTA1	0	genome.wustl.edu	37	chr1	158585119	158585119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ttgatatcaaggatcagagcGtcttccaagttgtcccccag	9	11	3	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	158585119	158585119	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.6675	p.D2225	0.988	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	72	0	0	164	29	15.03	-	-	-	A	158585119	G	A	158585119	2	1	479	1	0	0	0	0	0	0	0	1	15207	1136	40	1		1	SPTA1	1	158585119	Silent	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		158585119	90665502	1	44063										
GPR161	0	genome.wustl.edu	37	chr1	168056825	168056825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tcagtcacagaagccaacctTtgatttgttccacttcatcc	5	13	3	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	168056825	168056825	T	C	SNP	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	missense	c.1382	p.K461R	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	49	0	0	129	28	17.83	-	-	-	C	168056825	T	C	168056825	3	2	479	1	0	0	0	0	1	0	0	0	6715	1841	64	5	275	5	GPR161	1	168056825	Missense_Mutation	SNP	T	TCGA-B6-A40C-01A-11D-A23C-09	9471706	168056825	81193796	2	44064										
LAMB3	0	genome.wustl.edu	37	chr1	209800885	209800885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gcccactctcctcgtcacacGgcatgtccctccgggacccc	8	21	2	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	209800885	209800885	G	A	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.1328	p.P443L	0.991	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	57	0	0	60	43	41.75	-	-	-	A	209800885	G	A	209800885	3	1	479	1	0	0	0	0	1	0	0	0	8666	1116	39	1	2238	1	LAMB3	1	209800885	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	41744060	209800885	39449736	3	44065										
LIN9	0	genome.wustl.edu	37	chr1	226475491	226475491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ctggtgttgacattgttgctGtaaatttctatacaataaaa	7	5	1	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	226475491	226475491	G	C	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	missense	c.320	p.T107R	1.000	NULL	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	30	0	0	31	31	50	-	-	-	C	226475491	G	C	226475491	3	2	479	1	0	0	0	0	1	0	0	0	8869	1377	48	4	1400	4	LIN9	1	226475491	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	16674606	226475491	22775130	4	44066										
NID1	0	genome.wustl.edu	37	chr1	236157061	236157061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tgggcgcgtagtgcccgtgcGcatcgcactcaggaacgaac	14	13	1	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	236157061	236157061	G	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.2639	p.A880E	0.277	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	49	0	0	85	91	51.7	-	-	-	T	236157061	G	T	236157061	3	4	479	1	0	0	0	0	1	0	0	0	10486	1087	38	3	1136	3	NID1	1	236157061	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	9681570	236157061	13093560	5	44067										
RGS7	0	genome.wustl.edu	37	chr1	240975339	240975339	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	taccctctgctggctcggttCtttgctatagaagataaaac	8	10	2	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	1	240975339	240975339	C	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	nonsense	c.961	p.E321*	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	32	0	0	55	15	21.43	-	-	-	A	240975339	C	A	240975339	4	1	479	1	0	0	0	0	0	1	0	0	13394	922	32	2	522	2	RGS7	1	240975339	Nonsense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	4818278	240975339	8275282	6	44068										
SLC8A1	0	genome.wustl.edu	37	chr2	40657293	40657293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tacattcaccagtttcatttCcttctccttccatttctgtc	2	14	4	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	2	40657293	40657293	C	T	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.128	p.G43E	0.992	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	18	0	0	25	9	26.47	-	-	-	T	40657293	C	T	40657293	3	4	479	1	0	0	0	0	1	0	0	0	14795	855	30	2	2941	2	SLC8A1	2	40657293	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		40657293	202542080	7	44069										
CLASP2	0	genome.wustl.edu	37	chr3	33552254	33552254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gcttcctcagcagatctcacCacctaaaaaaaataggaaat	5	11	2	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	3	33552254	33552254	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	silent	c.4134	p.V1378	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	31	0	0	27	18	40	-	-	-	T	33552254	C	T	33552254	2	4	479	1	0	0	0	0	0	0	0	1	3485	581	21	4		4	CLASP2	3	33552254	Silent	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		33552254	164470176	8	44070										
WDFY3	0	genome.wustl.edu	37	chr4	85645723	85645723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ctctttactgtcataacttaCggctcttctatatcgagcag	6	11	4	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	4	85645723	85645723	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.7297	p.V2433I	0.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	29	0	0	17	7	29.17	-	-	-	T	85645723	C	T	85645723	3	4	479	1	0	0	0	0	1	0	0	0	17367	536	19	1	3375	1	WDFY3	4	85645723	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		85645723	105508553	9	44071										
SORBS2	0	genome.wustl.edu	37	chr4	186544315	186544315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	cggtgcaggatgctgttgtcCggcaagctcccccttttctt	11	13	1	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	4	186544315	186544315	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	silent	c.2256	p.P752	0.066	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	16	0	0	16	16	50	-	-	-	T	186544315	C	T	186544315	2	4	479	1	0	0	0	0	0	0	0	1	15017	639	23	1		1	SORBS2	4	186544315	Silent	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	100898592	186544315	4609961	10	44072										
LIX1	0	genome.wustl.edu	37	chr5	96460224	96460224	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gtcacgtaactcacaaagggAggcccaggagctggcagtga	14	10	2	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	5	96460224	96460224	A	G	SNP	LIX1	ENST00000274382	human	ensembl	69_37n	-1	known	silent	c.192	p.P64	0.498	NULL	NULL	-	no_errors	LIX1	HGNC	ENSG00000145721	36	0	0	31	21	40.38	-	-	-	G	96460224	A	G	96460224	2	3	479	1	0	0	0	0	0	0	0	1	8887	291	11	5		5	LIX1	5	96460224	Silent	SNP	A	TCGA-B6-A40C-01A-11D-A23C-09		96460224	84455036	11	44073										
TBC1D9B	0	genome.wustl.edu	37	chr5	179302039	179302039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	cagtcgacgatgaccacggcGctctcgaagggcatgacgct	13	13	1	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	5	179302039	179302039	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	silent	c.2049	p.S683	0.989	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	20	0	0	24	10	29.41	-	-	-	A	179302039	G	A	179302039	2	1	479	1	0	0	0	0	0	0	0	1	15723	1078	38	1		1	TBC1D9B	5	179302039	Silent	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	82841815	179302039	1613221	12	44074										
BTNL8	0	genome.wustl.edu	37	chr5	180374624	180374624	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	attttcttctccaaattccaGtgtaagcgagagagagaagc	9	8	2	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	5	180374624	180374624	G	T	SNP	BTNL8	ENST00000503543	human	ensembl	69_37n	1	known	splice_site	c.122-1	e2-1	0.000	-	-	-	no_errors	BTNL8	HGNC	ENSG00000113303	21	0	0	32	12	27.27	-	-	-	T	180374624	G	T	180374624	5	4	479	1	0	0	0	0	0	0	1	0	1576	1043	36	4	826	4	BTNL8	5	180374624	Splice_Site	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	1072585	180374624	540636	13	44075										
CDKAL1	0	genome.wustl.edu	37	chr6	21065365	21065365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tcaagaaacagtgaaacttgTtgaagagtacaaattcccaa	7	7	1	4			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	6	21065365	21065365	T	C	SNP	CDKAL1	ENST00000274695	human	ensembl	69_37n	1	known	missense	c.1142	p.V381A	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	49	0	0	55	17	23.61	-	-	-	C	21065365	T	C	21065365	3	2	479	1	0	0	0	0	1	0	0	0	3181	1725	60	5	1180	5	CDKAL1	6	21065365	Missense_Mutation	SNP	T	TCGA-B6-A40C-01A-11D-A23C-09		21065365	150049702	14	44076										
MUC17	0	genome.wustl.edu	37	chr7	100677258	100677258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tacacctgctgaaggtaccaGcatgccaacctcaacttata	6	13	1	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	7	100677258	100677258	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.2561	p.S854N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	54	0	0	88	38	30.16	-	-	-	A	100677258	G	A	100677258	3	1	479	1	0	0	0	0	1	0	0	0	10046	971	34	4	2571	4	MUC17	7	100677258	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		100677258	58461405	15	44077										
TEX15	0	genome.wustl.edu	37	chr8	30703515	30703516	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gtgtgaactcttctatgagcINStttttttaagtgaacaactg							TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	8	30703515	30703516	-	T	INS	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3019_3018	p.A1006fs	1.000:1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	62	0	0	38	22	36.67	-	-	-	T	30703516	-	T	30703515	7	5	479	1	0	1	1	0	0	0	0	0	15874	797	28	0	5366	0	TEX15	8	30703515	Frame_Shift_Ins	INS	-	TCGA-B6-A40C-01A-11D-A23C-09		30703515	115660507	16	44078										
TYRP1	0	genome.wustl.edu	37	chr9	12702411	12702414	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ctcctttttattccaactctAcaaacagtttccgaaacaca							TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	9	12702411	12702414	ACAA	-	DEL	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	frame_shift_del	c.1054_1057	p.N353fs	1.000:1.000:0.997:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	46	0	0	48	11	18.64	-	-	-	-	12702414	ACAA	-	12702411	7	5	479	1	0	1	0	1	0	0	0	0	16913	391	14	0	1068	0	TYRP1	9	12702411	Frame_Shift_Del	DEL	ACAA	TCGA-B6-A40C-01A-11D-A23C-09		12702411	128511020	17	44079										
ABCA1	0	genome.wustl.edu	37	chr9	107584791	107584791	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tcttacatggtggtcgtcttCcccgctccattgtggcccag	10	14	2	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	9	107584791	107584791	C	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	silent	c.2814	p.G938	0.990	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	56	0	0	47	32	40.51	-	-	-	A	107584791	C	A	107584791	2	1	479	1	0	0	0	0	0	0	0	1	28	842	30	2		2	ABCA1	9	107584791	Silent	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	94882380	107584791	33628640	18	44080										
GATA3	0	genome.wustl.edu	37	chr10	8111500	8111500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	caccacaaccacactctggaGgaggaatgccaatggggacc	11	13	1	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	10	8111500	8111500	G	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.989	p.R330K	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	84	0	0	76	29	27.62	-	-	-	A	8111500	G	A	8111500	3	1	479	1	0	0	0	0	1	0	0	0	6305	1000	35	4	1003	4	GATA3	10	8111500	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		8111500	127423247	19	44081										
OR5L2	0	genome.wustl.edu	37	chr11	55595104	55595104	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gctgtacatggtgaccatgtCtcagaagctgcgtgtggagc	14	9	1	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	11	55595104	55595104	C	A	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.410	p.S137Y	0.991	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	70	0	0	63	34	35.05	-	-	-	A	55595104	C	A	55595104	3	1	479	1	0	0	0	0	1	0	0	0	11244	913	32	2	412	2	OR5L2	11	55595104	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		55595104	79411412	20	44082										
R3HDM2	0	genome.wustl.edu	37	chr12	57660607	57660607	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	agggggttgcagaaaccctaCagaagggctgggaagacaga	16	7	0	4			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	12	57660607	57660607	C	A	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.1996	p.V666L	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	29	0	0	28	12	30	-	-	-	A	57660607	C	A	57660607	3	1	479	1	0	0	0	0	1	0	0	0	12971	478	17	4	958	4	R3HDM2	12	57660607	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		57660607	76191288	21	44083										
WDR66	0	genome.wustl.edu	37	chr12	122359392	122359392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	agaggaaaacgggcgaggagGaaggggaggaggaggggaag	24	2	0	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	12	122359392	122359392	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.181	p.E61K	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	17	0	0	17	4	19.05	-	-	-	A	122359392	G	A	122359392	3	1	479	1	0	0	0	0	1	0	0	0	17414	1175	41	2	183	2	WDR66	12	122359392	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	64698785	122359392	11492503	22	44084										
SACS	0	genome.wustl.edu	37	chr13	23915403	23915403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gcaaaacagcacttggtaatGgtgaatgaatatatttttta	8	4	0	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	13	23915403	23915403	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.2612	p.P871L	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	50	0	0	56	29	34.12	-	-	-	A	23915403	G	A	23915403	3	1	479	1	0	0	0	0	1	0	0	0	13890	1348	47	4	11131	4	SACS	13	23915403	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		23915403	91254475	23	44085										
TRIM13	0	genome.wustl.edu	37	chr13	50586375	50586375	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	atgcaaaggacacttggggcAgcctctcaacattttctgcc	9	12	2	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	13	50586375	50586375	A	G	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	missense	c.308	p.Q103R	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	34	0	0	44	15	25.42	-	-	-	G	50586375	A	G	50586375	3	3	479	1	0	0	0	0	1	0	0	0	16584	188	7	5	314	5	TRIM13	13	50586375	Missense_Mutation	SNP	A	TCGA-B6-A40C-01A-11D-A23C-09	26670972	50586375	64583503	24	44086										
GPR139	0	genome.wustl.edu	37	chr16	20043437	20043437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ggtaatggtgaacaagatggCggtggtcttccccgtggagt	16	7	1	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	16	20043437	20043437	C	T	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	missense	c.682	p.A228T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	32	0	0	57	21	26.92	-	-	-	T	20043437	C	T	20043437	3	4	479	1	0	0	0	0	1	0	0	0	6698	768	27	1	383	1	GPR139	16	20043437	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		20043437	70311316	25	44087										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	96	0	0	43	46	51.69	-	-	-	T	68772218	C	T	68772218	4	4	479	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	48728781	68772218	21582535	26	44088										
KRT14	0	genome.wustl.edu	37	chr17	39740115	39740115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ggctcaggtccacgccaggtGcagcgtccatctccacattg	11	15	2	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	17	39740115	39740115	G	A	SNP	KRT14	ENST00000167586	human	ensembl	69_37n	-1	known	missense	c.824	p.A275V	0.979	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	64	0	0	64	24	27.27	-	-	-	A	39740115	G	A	39740115	3	1	479	1	0	0	0	0	1	0	0	0	8504	1319	46	4	614	4	KRT14	17	39740115	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		39740115	41455095	27	44089										
HOXB2	0	genome.wustl.edu	37	chr17	46622246	46622247	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ggctggctgtttataaacccINSaatctccctctcaaattcaa							TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	17	46622246	46622247	-	A	INS	HOXB2	ENST00000330070	human	ensembl	69_37n	-1	known	frame_shift_ins	c.28_27	p.G9fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXB2	HGNC	ENSG00000173917	59	0	0	62	29	31.87	-	-	-	A	46622247	-	A	46622246	7	5	479	1	0	1	1	0	0	0	0	0	7352	594	21	0	1050	0	HOXB2	17	46622246	Frame_Shift_Ins	INS	-	TCGA-B6-A40C-01A-11D-A23C-09	6882131	46622246	34572964	28	44090										
PMAIP1	0	genome.wustl.edu	37	chr18	57567684	57567684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ggcgggtacggcgggtacggCgagggaccaagccggatttg	20	9	0	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	18	57567684	57567684	C	T	SNP	PMAIP1	ENST00000269518	human	ensembl	69_37n	1	novel	missense	c.83	p.A28V	0.003	NULL	NULL	-	no_errors	PMAIP1	HGNC	ENSG00000141682	47	0	0	31	21	39.62	-	-	-	T	57567684	C	T	57567684	3	4	479	1	0	0	0	0	1	0	0	0	12204	783	27	1		1	PMAIP1	18	57567684	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		57567684	20509564	29	44091										
KCNG2	0	genome.wustl.edu	37	chr18	77624283	77624283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	tgccggacatccgcgccgagGaggagcgggtgagcgcggcc	19	13	0	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	18	77624283	77624283	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	69_37n	1	known	missense	c.616	p.E206K	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342	11	0	0	9	6	40	-	-	-	A	77624283	G	A	77624283	3	1	479	1	0	0	0	0	1	0	0	0	8082	1175	41	2	618	2	KCNG2	18	77624283	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	20056599	77624283	452965	30	44092										
ADNP2	0	genome.wustl.edu	37	chr18	77894253	77894253	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	cagggtgcccctggaagcctCactcattccccccctgctgc	9	19	2	0			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	18	77894253	77894253	C	A	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	silent	c.957	p.L319	0.001	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	62	0	0	58	32	35.56	-	-	-	A	77894253	C	A	77894253	2	1	479	1	0	0	0	0	0	0	0	1	324	813	29	2		2	ADNP2	18	77894253	Silent	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	269970	77894253	182995	31	44093										
PIH1D1	0	genome.wustl.edu	37	chr19	49952762	49952762	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ttctgcatgaggctctcccaGactcatggggatgcgaaacc	11	12	3	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	19	49952762	49952762	G	C	SNP	PIH1D1	ENST00000262265	human	ensembl	69_37n	-1	known	missense	c.307	p.L103V	1.000	NULL	NULL	-	no_errors	PIH1D1	HGNC	ENSG00000104872	57	0	0	28	20	41.67	-	-	-	C	49952762	G	C	49952762	3	2	479	1	0	0	0	0	1	0	0	0	11980	933	33	2	593	2	PIH1D1	19	49952762	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		49952762	9176221	32	44094										
SIM2	0	genome.wustl.edu	37	chr21	38103360	38103360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	ccacagggtgaccgaggtgaCggggtacgagccgcaggacc	17	12	0	2			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	21	38103360	38103360	C	T	SNP	SIM2	ENST00000290399	human	ensembl	69_37n	1	known	missense	c.758	p.T253M	1.000	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM2	HGNC	ENSG00000159263	61	0	0	81	9	10	-	-	-	T	38103360	C	T	38103360	3	4	479	1	0	0	0	0	1	0	0	0	14413	536	19	1	784	1	SIM2	21	38103360	Missense_Mutation	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09		38103360	10026535	33	44095										
TTC3	0	genome.wustl.edu	37	chr21	38569977	38569977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	gagtgacagaacacattctaGatgaacagaaaaagaaaaag	9	5	1	6			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	21	38569977	38569977	G	A	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.5686	p.D1896N	0.742	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	17	0	0	27	10	27.03	-	-	-	A	38569977	G	A	38569977	3	1	479	1	0	0	0	0	1	0	0	0	16794	942	33	2	5852	2	TTC3	21	38569977	Missense_Mutation	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09	466617	38569977	9559918	34	44096										
GPR101	0	genome.wustl.edu	37	chrX	136113330	136113330	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	aaggcagcctggccccagccGtagagtggaggagtgctctg	16	11	1	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	X	136113330	136113330	G	A	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	silent	c.504	p.Y168	0.882	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	39	0	0	39	23	37.1	-	-	-	A	136113330	G	A	136113330	2	1	479	1	0	0	0	0	0	0	0	1	6672	1140	40	1		1	GPR101	23	136113330	Silent	SNP	G	TCGA-B6-A40C-01A-11D-A23C-09		136113330	19157230	35	44097										
SLITRK4	0	genome.wustl.edu	37	chrX	142717848	142717848	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	3	0.871886716160037	1.05029013539652	3.85106382978723	0.770212765957447	1	1	0	atatttttctcttggcagttCacacttagtcccaaatctga	5	10	3	1			TCGA-B6-A40C-01A-11D-A23C-09	TCGA-B6-A40C-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	837881ec-621e-4a49-972f-4a161a24ba24	9da5cb06-5902-4204-b1c3-2c1ba5e85564	X	142717848	142717848	C	T	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	silent	c.1077	p.V359	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	51	0	0	66	10	12.99	-	-	-	T	142717848	C	T	142717848	2	4	479	1	0	0	0	0	0	0	0	1	14834	813	29	2		2	SLITRK4	23	142717848	Silent	SNP	C	TCGA-B6-A40C-01A-11D-A23C-09	6604518	142717848	12552712	36	44098										
ARNT	0	genome.wustl.edu	37	chr1	150807078	150807078	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	catggaagactgctgaccttCctttttcactgttccagtct	7	12	2	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	1	150807078	150807078	C	A	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	nonsense	c.739	p.E247*	1.000	pfam_PAS_fold	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	322	0	0	248	32	11.43	-	-	-	A	150807078	C	A	150807078	4	1	480	1	0	0	0	0	0	1	0	0	969	864	30	2	1690	2	ARNT	1	150807078	Nonsense_Mutation	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09		150807078	98443543	1	44099										
MAP2	0	genome.wustl.edu	37	chr2	210557446	210557446	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	aaggaaaaggagtcagagaaGcaaagtaagcctggtgaaga	14	4	1	3			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	2	210557446	210557446	G	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.552	p.K184N	0.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	89	0	0	47	26	35.14	-	-	-	T	210557446	G	T	210557446	3	4	480	1	0	0	0	0	1	0	0	0	9306	962	34	4	566	4	MAP2	2	210557446	Missense_Mutation	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09		210557446	32641927	2	44100										
HDAC11	0	genome.wustl.edu	37	chr3	13545616	13545616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	gccatcaggcggaaggtggaGctggagtggggcacagagga	20	7	1	1			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	3	13545616	13545616	G	T	SNP	HDAC11	ENST00000295757	human	ensembl	69_37n	1	known	missense	c.672	p.E224D	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	249	0	0	164	74	31.09	-	-	-	T	13545616	G	T	13545616	3	4	480	1	0	0	0	0	1	0	0	0	7057	962	34	4	706	4	HDAC11	3	13545616	Missense_Mutation	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09		13545616	184476814	3	44101										
IFT122	0	genome.wustl.edu	37	chr3	129207207	129207207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	cgtgaactggccatggaagcGctagaaggtttagattttga	13	6	0	4			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	3	129207207	129207207	G	A	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	silent	c.2112	p.A704	0.517	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	160	0	0	140	31	18.13	-	-	-	A	129207207	G	A	129207207	2	1	480	1	0	0	0	0	0	0	0	1	7609	1074	38	1		1	IFT122	3	129207207	Silent	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09	115661591	129207207	68815223	4	44102										
CCNG2	0	genome.wustl.edu	37	chr4	78082828	78082828	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	gtattagccttgtgccttctCaatttggaagtggaaacttt	9	7	1	0			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	4	78082828	78082828	C	G	SNP	CCNG2	ENST00000316355	human	ensembl	69_37n	1	known	silent	c.633	p.L211	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNG2	HGNC	ENSG00000138764	280	1	0.36	153	47	23.38	-	-	-	G	78082828	C	G	78082828	2	3	480	1	0	0	0	0	0	0	0	1	2953	813	29	2		2	CCNG2	4	78082828	Silent	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09		78082828	113071448	5	44103										
PCDHA4	0	genome.wustl.edu	37	chr5	140188734	140188734	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	ctggtactggtgaaggaccaCggcgagcccgcgctgacggc	16	13	0	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	5	140188734	140188734	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.1962	p.H654	0.983	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	37	0	0	25	21	43.75	-	-	-	T	140188734	C	T	140188734	2	4	480	1	0	0	0	0	0	0	0	1	11599	535	19	1		1	PCDHA4	5	140188734	Silent	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09		140188734	40726526	6	44104										
TSC1	0	genome.wustl.edu	37	chr9	135798857	135798857	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	acaccaagacgcctgttgtgAggacaacgacgtcagtgtcc	11	12	1	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	9	135798857	135798857	A	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.386	p.L129H	1.000	pfam_Hamartin,superfamily_ARM-type_fold	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	154	0	0	52	51	49.04	-	-	-	T	135798857	A	T	135798857	3	4	480	1	0	0	0	0	1	0	0	0	16701	304	11	5	3180	5	TSC1	9	135798857	Missense_Mutation	SNP	A	TCGA-BH-A0AU-01A-11D-A12Q-09		135798857	5414574	7	44105										
KCNMA1	0	genome.wustl.edu	37	chr10	79397263	79397264	+	In_Frame_Ins	INS	-	-	GAG													0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	aggaagaagaagaagaggaaINSgaggaggaggaggaggagga							TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	10	79397263	79397264	-	GAG	INS	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	in_frame_ins	c.138_137	p.50in_frame_insS	0.506:0.437	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	16	0	0	34	10	22.73	-	-	-	GAG	79397264	-	GAG	79397263	7	5	480	1	0	1	1	0	0	0	0	0	8127	59	3	0	3856	0	KCNMA1	10	79397263	In_Frame_Ins	INS	-	TCGA-BH-A0AU-01A-11D-A12Q-09		79397263	56137484	8	44106										
ARCN1	0	genome.wustl.edu	37	chr11	118468587	118468587	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	aatgacttcttccctgttcaAgtttcctttgtctccaagaa	5	11	3	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	11	118468587	118468587	A	G	SNP	ARCN1	ENST00000264028	human	ensembl	69_37n	1	known	silent	c.1407	p.Q469	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139	277	0	0	94	100	51.55	-	-	-	G	118468587	A	G	118468587	2	3	480	1	0	0	0	0	0	0	0	1	844	69	3	5		5	ARCN1	11	118468587	Silent	SNP	A	TCGA-BH-A0AU-01A-11D-A12Q-09		118468587	16537929	9	44107										
TIMELESS	0	genome.wustl.edu	37	chr12	56817648	56817648	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	tctggagaaatgtcttgagaGccaaacacatctccttcagg	9	10	4	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	12	56817648	56817648	G	A	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	silent	c.1899	p.G633	0.986	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	308	0	0	182	88	32.47	-	-	-	A	56817648	G	A	56817648	2	1	480	1	0	0	0	0	0	0	0	1	15999	958	34	4		4	TIMELESS	12	56817648	Silent	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09		56817648	77034247	10	44108										
RFX4	0	genome.wustl.edu	37	chr12	107141268	107141268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	acacagtgacgacggctgctGggtccccagctgagaactcc	12	14	0	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	12	107141268	107141268	G	T	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.1714	p.G572W	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	73	0	0	65	32	32.99	-	-	-	T	107141268	G	T	107141268	3	4	480	1	0	0	0	0	1	0	0	0	13348	1348	47	4	1954	4	RFX4	12	107141268	Missense_Mutation	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09	50323620	107141268	26710627	11	44109										
PCDH9	0	genome.wustl.edu	37	chr13	67802338	67802338	+	Frame_Shift_Del	DEL	A	A	-													0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	aatttccccagtgctgctggAaactttcaccaaaggggcat							TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	13	67802338	67802338	A	-	DEL	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	frame_shift_del	c.235	p.S79fs	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	140	0	0	82	17	17.17	-	-	-	-	67802338	A	-	67802338	7	5	480	1	0	1	0	1	0	0	0	0	11591	246	9	0	3494	0	PCDH9	13	67802338	Frame_Shift_Del	DEL	A	TCGA-BH-A0AU-01A-11D-A12Q-09		67802338	47367540	12	44110										
ZNF207	0	genome.wustl.edu	37	chr17	30678929	30678929	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	gcttagctattcattgcatgCaggtaaggatttttcttctg	9	7	3	0			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	30678929	30678929	C	T	SNP	ZNF207	ENST00000394670	human	ensembl	69_37n	1	known	nonsense	c.166	p.Q56*	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244	254	0	0	161	63	28.12	-	-	-	T	30678929	C	T	30678929	4	4	480	1	0	0	0	0	0	1	0	0	17861	711	25	4	172	4	ZNF207	17	30678929	Nonsense_Mutation	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09		30678929	50516281	13	44111										
ACE	0	genome.wustl.edu	37	chr17	61570872	61570872	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	atgggccacatccagtatttCatgcagtacaaagacttacc	7	11	1	1			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	61570872	61570872	C	T	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	silent	c.2988	p.F996	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	118	0	0	79	32	28.83	-	-	-	T	61570872	C	T	61570872	2	4	480	1	0	0	0	0	0	0	0	1	136	825	29	2		2	ACE	17	61570872	Silent	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09	30891943	61570872	19624338	14	44112										
ITGB4	0	genome.wustl.edu	37	chr17	73745040	73745040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	cctgcggggccgccaggtccGccgtttccacgtccagctca	12	18	1	0			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	73745040	73745040	G	A	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.3230	p.R1077H	1.000	pirsf_Integrin_bsu-4,pfam_Calx_beta,smart_Calx_beta	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	44	0	0	55	22	28.21	-	-	-	A	73745040	G	A	73745040	3	1	480	1	0	0	0	0	1	0	0	0	7951	1087	38	1	3332	1	ITGB4	17	73745040	Missense_Mutation	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09	12174168	73745040	7450170	15	44113										
CNN2	0	genome.wustl.edu	37	chr19	1032430	1032430	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	ccgggctccgtccccaagatCaaccgctccatgcagaactg	9	17	1	2			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	19	1032430	1032430	C	G	SNP	CNN2	ENST00000263097	human	ensembl	69_37n	1	known	missense	c.225	p.I75M	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_Calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN2	HGNC	ENSG00000064666	138	0	0	97	46	32.17	-	-	-	G	1032430	C	G	1032430	3	3	480	1	0	0	0	0	1	0	0	0	3640	816	29	2	235	2	CNN2	19	1032430	Missense_Mutation	SNP	C	TCGA-BH-A0AU-01A-11D-A12Q-09		1032430	58096553	16	44114										
CNTD2	0	genome.wustl.edu	37	chr19	40729202	40729202	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	tccaggaagtaggtggcaagTaacatcacctgcaagtgagg	13	8	1	1			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	19	40729202	40729202	T	A	SNP	CNTD2	ENST00000430325	human	ensembl	69_37n	-1	known	missense	c.681	p.L227F	0.000	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CNTD2	HGNC	ENSG00000105219	10	0	0	9	8	47.06	-	-	-	A	40729202	T	A	40729202	3	1	480	1	0	0	0	0	1	0	0	0	3666	1635	57	5	246	5	CNTD2	19	40729202	Missense_Mutation	SNP	T	TCGA-BH-A0AU-01A-11D-A12Q-09	39696772	40729202	18399781	17	44115										
MICAL3	0	genome.wustl.edu	37	chr22	18300541	18300541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	acgccttgcggggcctggggGcgcctgaggccagctccatc	16	15	0	1			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	22	18300541	18300541	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.4886	p.A1629V	0.949	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	11	0	0	2	9	81.82	-	-	-	A	18300541	G	A	18300541	3	1	480	1	0	0	0	0	1	0	0	0	9642	1203	42	4	1150	4	MICAL3	22	18300541	Missense_Mutation	SNP	G	TCGA-BH-A0AU-01A-11D-A12Q-09		18300541	33004025	18	44116										
FRMPD4	0	genome.wustl.edu	37	chrX	12736089	12736089	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.271143190851425	2.77777777777778	8.33333333333333	1.19047619047619	1	1	0	gggaacacaacaggaaaaaaAcagcaggggaccaaaacggc	12	9	0	0			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	X	12736089	12736089	A	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3144	p.K1048N	0.998	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	159	0	0	106	37	25.87	-	-	-	T	12736089	A	T	12736089	3	4	480	1	0	0	0	0	1	0	0	0	6108	40	2	5	3206	5	FRMPD4	23	12736089	Missense_Mutation	SNP	A	TCGA-BH-A0AU-01A-11D-A12Q-09		12736089	142534471	19	44117										
EPHA2	0	genome.wustl.edu	37	chr1	16475071	16475071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gatggtctcagggaagtgggCcaggccctgcagcagctcgg	17	11	1	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	16475071	16475071	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	missense	c.625	p.A209T	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	41	0	0	23	11	32.35	-	-	-	T	16475071	C	T	16475071	3	4	481	1	0	0	0	0	1	0	0	0	5204	739	26	4	2365	4	EPHA2	1	16475071	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		16475071	232775550	1	44118										
HIVEP3	0	genome.wustl.edu	37	chr1	41978910	41978910	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cgggccggggagcatcgctgGggagatgagtcgtttttggt	19	7	0	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	41978910	41978910	G	C	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	silent	c.5982	p.P1994	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	29	0	0	18	14	43.75	-	-	-	C	41978910	G	C	41978910	2	2	481	1	0	0	0	0	0	0	0	1	7239	1219	43	4		4	HIVEP3	1	41978910	Silent	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	25503839	41978910	207271711	2	44119										
LRRIQ3	0	genome.wustl.edu	37	chr1	74507371	74507371	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cactaaatgttcggagtttcAtaccagctctttgtggtgca	9	9	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	74507371	74507371	A	C	SNP	LRRIQ3	ENST00000354431	human	ensembl	69_37n	-1	known	missense	c.1244	p.M415R	0.410	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620	266	0	0	168	66	28.21	-	-	-	C	74507371	A	C	74507371	3	2	481	1	0	0	0	0	1	0	0	0	9096	217	8	5	638	5	LRRIQ3	1	74507371	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	32528461	74507371	174743250	3	44120										
POGZ	0	genome.wustl.edu	37	chr1	151403234	151403234	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	aacaggcctcaatactggttGagtaaccattgtgcccagac	9	11	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	151403234	151403234	G	C	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.367	p.Q123E	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	133	0	0	176	29	14.15	-	-	-	C	151403234	G	C	151403234	3	2	481	1	0	0	0	0	1	0	0	0	12260	1299	45	2	3943	2	POGZ	1	151403234	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	76895863	151403234	97847387	4	44121										
PPFIA4	0	genome.wustl.edu	37	chr1	203040821	203040821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cctgctctatggactgcaggCacgccaagtgatggaaagag	13	10	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	203040821	203040821	C	T	SNP	PPFIA4	ENST00000367240	human	ensembl	69_37n	1	known	missense	c.3263	p.A1088V	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_Prefoldin,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847	93	0	0	68	28	29.17	-	-	-	T	203040821	C	T	203040821	3	4	481	1	0	0	0	0	1	0	0	0	12385	724	25	4	1866	4	PPFIA4	1	203040821	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	51637587	203040821	46209800	5	44122										
ZNF670	0	genome.wustl.edu	37	chr1	247201519	247201519	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tataacttctctggacattcCtcacactcaaatagtttgtt	4	10	3	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	1	247201519	247201519	C	G	SNP	ZNF670	ENST00000366503	human	ensembl	69_37n	-1	known	missense	c.402	p.E134D	0.984	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF670	HGNC	ENSG00000135747	131	0	0	164	30	15.46	-	-	-	G	247201519	C	G	247201519	3	3	481	1	0	0	0	0	1	0	0	0	18173	680	24	4	771	4	ZNF670	1	247201519	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	44160698	247201519	2049102	6	44123										
MTA3	0	genome.wustl.edu	37	chr2	42931438	42931438	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tcagaatcctctcttagggaGagcctgtgagagctgctatg	12	9	2	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	2	42931438	42931438	G	A	SNP	MTA3	ENST00000405094	human	ensembl	69_37n	1	known	missense	c.1130	p.R377K	0.995	smart_Znf_GATA	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	108	0	0	82	22	21.15	-	-	-	A	42931438	G	A	42931438	3	1	481	1	0	0	0	0	1	0	0	0	9982	942	33	2	1176	2	MTA3	2	42931438	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		42931438	200267935	7	44124										
ZEB2	0	genome.wustl.edu	37	chr2	145157550	145157550	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cccgtgtgtagccataagaaCtttatagtcattgaagtcta	8	8	2	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	2	145157550	145157550	C	G	SNP	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	missense	c.1204	p.V402L	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	132	0	0	90	33	26.61	-	-	-	G	145157550	C	G	145157550	3	3	481	1	0	0	0	0	1	0	0	0	17720	565	20	4	2452	4	ZEB2	2	145157550	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	102226112	145157550	98041823	8	44125										
SCN3A	0	genome.wustl.edu	37	chr2	166020192	166020192	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gttctcaacgctgagacattGcccaggtccacaaactctgt	8	13	2	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	2	166020192	166020192	G	T	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	silent	c.630	p.G210	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	248	0	0	198	61	23.55	-	-	-	T	166020192	G	T	166020192	2	4	481	1	0	0	0	0	0	0	0	1	14006	1306	46	4		4	SCN3A	2	166020192	Silent	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	20862642	166020192	77179181	9	44126										
KLHL23	0	genome.wustl.edu	37	chr2	170592167	170592167	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ctgctcatgatgtagaaaatCgaattgaatgcctctataat	7	7	2	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	2	170592167	170592167	C	G	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	1	known	missense	c.643	p.R215G	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	54	0	0	47	9	16.07	-	-	-	G	170592167	C	G	170592167	3	3	481	1	0	0	0	0	1	0	0	0	8431	876	31	3	645	3	KLHL23	2	170592167	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	4571975	170592167	72607206	10	44127										
TMPPE	0	genome.wustl.edu	37	chr3	33135493	33135493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cagaggttgctcactgtgctGcgccaaatgtagagggagcc	14	10	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	3	33135493	33135493	G	A	SNP	TMPPE	ENST00000342462	human	ensembl	69_37n	-1	known	silent	c.195	p.R65	0.065	NULL	pfam_Metallo_PEstase_dom	-	no_errors	TMPPE	HGNC	ENSG00000188167	27	0	0	16	8	33.33	-	-	-	A	33135493	G	A	33135493	2	1	481	1	0	0	0	0	0	0	0	1	16333	1306	46	4		4	TMPPE	3	33135493	Silent	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		33135493	164886937	11	44128										
CBLB	0	genome.wustl.edu	37	chr3	105421211	105421211	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ttgtctggtgggattggtggAggtctttcaggtggcggtgg	20	4	3	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	3	105421211	105421211	A	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	silent	c.1686	p.P562	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	134	0	0	91	42	31.34	-	-	-	T	105421211	A	T	105421211	2	4	481	1	0	0	0	0	0	0	0	1	2726	291	11	5		5	CBLB	3	105421211	Silent	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	72285718	105421211	92601219	12	44129										
MME	0	genome.wustl.edu	37	chr3	154889935	154889935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	aattatattaaaaagaatggCgaagaaaaattacttcctgg	7	4	0	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	3	154889935	154889935	C	T	SNP	MME	ENST00000360490	human	ensembl	69_37n	1	known	silent	c.2010	p.G670	0.008	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549	154	1	0.65	148	96	39.34	-	-	-	T	154889935	C	T	154889935	2	4	481	1	0	0	0	0	0	0	0	1	9716	755	27	1		1	MME	3	154889935	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	49468724	154889935	43132495	13	44130										
APBB2	0	genome.wustl.edu	37	chr4	41015638	41015638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tgggtgaggcactgtcttggGacaacgttgtccagctggac	15	9	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	4	41015638	41015638	G	A	SNP	APBB2	ENST00000295974	human	ensembl	69_37n	-1	known	missense	c.797	p.S266F	1.000	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB2	HGNC	ENSG00000163697	146	0	0	103	39	27.46	-	-	-	A	41015638	G	A	41015638	3	1	481	1	0	0	0	0	1	0	0	0	762	1174	41	2	1534	2	APBB2	4	41015638	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		41015638	150138638	14	44131										
SEMA5A	0	genome.wustl.edu	37	chr5	9202316	9202316	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ctcggaaaaagaagtaggtaAaatttccgatgtcataagat	9	5	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	5	9202316	9202316	A	C	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.683	p.F228C	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	78	0	0	109	26	19.26	-	-	-	C	9202316	A	C	9202316	3	2	481	1	0	0	0	0	1	0	0	0	14125	14	1	5	2601	5	SEMA5A	5	9202316	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09		9202316	171712944	15	44132										
HSD17B4	0	genome.wustl.edu	37	chr5	118862855	118862855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ttgcaaaaccagtatatccaGgacaaactctacaaactgag	6	10	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	5	118862855	118862855	G	A	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.1708	p.G570R	1.000	pfam_MaoC_deHydtase	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	126	0	0	67	38	36.19	-	-	-	A	118862855	G	A	118862855	3	1	481	1	0	0	0	0	1	0	0	0	7437	1001	35	4	1786	4	HSD17B4	5	118862855	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	109660539	118862855	62052405	16	44133										
SLC17A3	0	genome.wustl.edu	37	chr6	25862627	25862627	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tcgttgtgaaattgcagaaaTgtaagacgagggctattcca	11	6	0	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	25862627	25862627	T	C	SNP	SLC17A3	ENST00000397060	human	ensembl	69_37n	-1	known	missense	c.137	p.H46R	0.014	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564	191	0	0	186	53	22.18	-	-	-	C	25862627	T	C	25862627	3	2	481	1	0	0	0	0	1	0	0	0	14507	1464	51	5	1399	5	SLC17A3	6	25862627	Missense_Mutation	SNP	T	TCGA-BH-A0AV-01A-31D-A10Y-09		25862627	145252440	17	44134										
DHX16	0	genome.wustl.edu	37	chr6	30623036	30623036	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ccttccagctgttcccgcacAtcccgggctcggcgcatcga	10	18	0	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	30623036	30623036	A	G	SNP	DHX16	ENST00000376442	human	ensembl	69_37n	-1	known	silent	c.2739	p.D913	0.998	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560	76	0	0	90	27	23.08	-	-	-	G	30623036	A	G	30623036	2	3	481	1	0	0	0	0	0	0	0	1	4538	214	8	5		5	DHX16	6	30623036	Silent	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	4760409	30623036	140492031	18	44135										
ZBTB22	0	genome.wustl.edu	37	chr6	33282945	33282945	+	Frame_Shift_Del	DEL	C	C	-													0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ctcttggacggcaaggatggCcccgtgggagtcccaggccc							TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	33282945	33282945	C	-	DEL	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	frame_shift_del	c.1749	p.P584fs	0.003	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	23	0	0	37	15	28.3	-	-	-	-	33282945	C	-	33282945	7	5	481	1	0	1	0	1	0	0	0	0	17626	726	26	0	159	0	ZBTB22	6	33282945	Frame_Shift_Del	DEL	C	TCGA-BH-A0AV-01A-31D-A10Y-09	2659909	33282945	137832122	19	44136										
PTCRA	0	genome.wustl.edu	37	chr6	42891993	42891993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cttctacagccaggacctgcCcccaggagcctctcaggggt	11	16	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	42891993	42891993	C	T	SNP	PTCRA	ENST00000304672	human	ensembl	69_37n	1	known	missense	c.406	p.P136S	0.015	NULL	NULL	-	no_errors	PTCRA	HGNC	ENSG00000171611	45	0	0	45	13	22.03	-	-	-	T	42891993	C	T	42891993	3	4	481	1	0	0	0	0	1	0	0	0	12815	623	22	4	416	4	PTCRA	6	42891993	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	9609048	42891993	128223074	20	44137										
CUL9	0	genome.wustl.edu	37	chr6	43191035	43191035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gcggtgcagagacctggcctCctccctgcgcctcctgcggg	14	17	0	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	43191035	43191035	C	T	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.7184	p.S2395F	0.999	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	33	0	0	17	13	41.94	-	-	-	T	43191035	C	T	43191035	3	4	481	1	0	0	0	0	1	0	0	0	4092	855	30	2	7334	2	CUL9	6	43191035	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	299042	43191035	127924032	21	44138										
TCTE1	0	genome.wustl.edu	37	chr6	44253808	44253808	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gccgcagtccttgacatcgtAcaccaggtccagctcctcca	8	17	0	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	44253808	44253808	A	T	SNP	TCTE1	ENST00000371505	human	ensembl	69_37n	-1	known	missense	c.739	p.Y247N	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221	80	0	0	108	26	19.26	-	-	-	T	44253808	A	T	44253808	3	4	481	1	0	0	0	0	1	0	0	0	15812	391	14	5	778	5	TCTE1	6	44253808	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	1062773	44253808	126861259	22	44139										
FHL5	0	genome.wustl.edu	37	chr6	97051596	97051596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tgttacatgttatgatcgtgTattttctaactattgcgagg	9	5	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	97051596	97051596	T	C	SNP	FHL5	ENST00000326771	human	ensembl	69_37n	1	known	missense	c.107	p.V36A	0.777	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214	131	0	0	92	43	31.85	-	-	-	C	97051596	T	C	97051596	3	2	481	1	0	0	0	0	1	0	0	0	5927	1638	57	5	109	5	FHL5	6	97051596	Missense_Mutation	SNP	T	TCGA-BH-A0AV-01A-31D-A10Y-09	52797788	97051596	74063471	23	44140										
KIF25	0	genome.wustl.edu	37	chr6	168439275	168439275	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	agaagcccaaaggttgaagtCtccatagtggaagtttacaa	10	7	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	6	168439275	168439275	C	G	SNP	KIF25	ENST00000354419	human	ensembl	69_37n	1	known	silent	c.360	p.V120	0.444	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337	145	0	0	51	83	61.94	-	-	-	G	168439275	C	G	168439275	2	3	481	1	0	0	0	0	0	0	0	1	8345	900	32	2		2	KIF25	6	168439275	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	71387679	168439275	2675792	24	44141										
INTS1	0	genome.wustl.edu	37	chr7	1525118	1525118	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gacaaaccctgtggcagacaCtcatgagctgggccggcttt	12	12	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	7	1525118	1525118	C	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.3450	p.E1150	0.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	31	0	0	18	26	59.09	-	-	-	T	1525118	C	T	1525118	2	4	481	1	0	0	0	0	0	0	0	1	7829	580	20	4		4	INTS1	7	1525118	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		1525118	157613545	25	44142										
TMEM106B	0	genome.wustl.edu	37	chr7	12258129	12258129	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gattccatatagtgatcagaGattaaggccaagaagaacgt	10	6	1	4			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	7	12258129	12258129	G	C	SNP	TMEM106B	ENST00000396667	human	ensembl	69_37n	1	known	missense	c.263	p.R88T	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460	202	0	0	154	42	21.43	-	-	-	C	12258129	G	C	12258129	3	2	481	1	0	0	0	0	1	0	0	0	16116	942	33	2	269	2	TMEM106B	7	12258129	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	10733011	12258129	146880534	26	44143										
DNAH11	0	genome.wustl.edu	37	chr7	21639693	21639693	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	atagttttagaatgtctgccCagatgaaccgaatagcaaca	8	8	1	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	7	21639693	21639693	C	G	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.2956	p.Q986E	0.991	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	39	0	0	50	20	28.57	-	-	-	G	21639693	C	G	21639693	3	3	481	1	0	0	0	0	1	0	0	0	4635	595	21	4	3014	4	DNAH11	7	21639693	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	9381564	21639693	137498970	27	44144										
CADPS2	0	genome.wustl.edu	37	chr7	122153323	122153323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ctgaactagaacaaagtaacGttttttccatcttttccaaa	4	9	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	7	122153323	122153323	G	A	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.1522	p.R508C	1.000	pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	161	0	0	82	44	34.92	-	-	-	A	122153323	G	A	122153323	3	1	481	1	0	0	0	0	1	0	0	0	2596	1145	40	1	2500	1	CADPS2	7	122153323	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	100513630	122153323	36985340	28	44145										
PIWIL2	0	genome.wustl.edu	37	chr8	22172647	22172647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gtggtgagctctggggagtgGatattcctctggtgagtgat	17	5	2	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	8	22172647	22172647	G	A	SNP	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	missense	c.2197	p.D733N	0.997	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	195	0	0	138	28	16.77	-	-	-	A	22172647	G	A	22172647	3	1	481	1	0	0	0	0	1	0	0	0	12032	1174	41	2	2263	2	PIWIL2	8	22172647	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		22172647	124191375	29	44146										
LYNX1	0	genome.wustl.edu	37	chr8	143856615	143856615	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ccccagagggtggccaggagGatgggggccagggccagggt	21	10	0	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	8	143856615	143856615	G	A	SNP	LYNX1	ENST00000345173	human	ensembl	69_37n	-1	known	silent	c.321	p.I107	0.000	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYNX1	HGNC	ENSG00000180155	47	0	0	38	16	29.63	-	-	-	A	143856615	G	A	143856615	2	1	481	1	0	0	0	0	0	0	0	1	9175	1164	41	2		2	LYNX1	8	143856615	Silent	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	121683968	143856615	2507407	30	44147										
APTX	0	genome.wustl.edu	37	chr9	32987552	32987552	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ctaccctcacctttttgataGgtgcatcttttcccttcttt	4	13	3	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	9	32987552	32987552	G	C	SNP	APTX	ENST00000379819	human	ensembl	69_37n	-1	known	missense	c.515	p.P172R	0.006	NULL	pfam_Histidine_triad_HIT,superfamily_HIT-like,superfamily_SMAD_FHA_domain,pfscan_Histidine_triad_HIT	-	no_errors	APTX	HGNC	ENSG00000137074	192	0	0	119	38	24.2	-	-	-	C	32987552	G	C	32987552	3	2	481	1	0	0	0	0	1	0	0	0	822	1000	35	4	584	4	APTX	9	32987552	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		32987552	108225879	31	44148										
VPS13A	0	genome.wustl.edu	37	chr9	79955388	79955388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	acatttacccctttttatatGattaaaaacaaaagcaaata	2	7	0	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	9	79955388	79955388	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.6948	p.M2316I	1.000	pfam_VPSAP	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	122	1	0.81	101	39	27.46	-	-	-	C	79955388	G	C	79955388	3	2	481	1	0	0	0	0	1	0	0	0	17286	1290	45	2	7146	2	VPS13A	9	79955388	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	46967836	79955388	61258043	32	44149										
DENND1A	0	genome.wustl.edu	37	chr9	126520095	126520095	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ttctggccaacttggctaacTgtgaggctgcagcaaaggca	12	10	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	9	126520095	126520095	T	A	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	silent	c.93	p.T31	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	81	0	0	49	29	37.18	-	-	-	A	126520095	T	A	126520095	2	1	481	1	0	0	0	0	0	0	0	1	4462	1567	55	5		5	DENND1A	9	126520095	Silent	SNP	T	TCGA-BH-A0AV-01A-31D-A10Y-09	46564707	126520095	14693336	33	44150										
CDH23	0	genome.wustl.edu	37	chr10	73553149	73553149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ccggggcaccgttcctctctCgggcacagccattgtcacca	10	17	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	10	73553149	73553149	C	T	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.6473	p.S2158L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	33	0	0	25	22	46.81	-	-	-	T	73553149	C	T	73553149	3	4	481	1	0	0	0	0	1	0	0	0	3137	893	31	1	6995	1	CDH23	10	73553149	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		73553149	61981598	34	44151										
DNHD1	0	genome.wustl.edu	37	chr11	6592506	6592506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cacctgtcagcctttcgccaCccgcgccgcctgctgctggc	10	20	1	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	11	6592506	6592506	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.13764	p.H4588	0.986	pfam_Dynein_heavy	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	59	0	0	28	12	30	-	-	-	T	6592506	C	T	6592506	2	4	481	1	0	0	0	0	0	0	0	1	4703	506	18	4		4	DNHD1	11	6592506	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		6592506	128414010	35	44152										
A2ML1	0	genome.wustl.edu	37	chr12	8998791	8998791	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gtagctgacaaaattcagttCtcagtcgagatgtgctttga	10	7	2	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	12	8998791	8998791	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	silent	c.1656	p.F552	0.669	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	254	0	0	236	94	28.48	-	-	-	T	8998791	C	T	8998791	2	4	481	1	0	0	0	0	0	0	0	1	5	912	32	2		2	A2ML1	12	8998791	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		8998791	124853104	36	44153										
PZP	0	genome.wustl.edu	37	chr12	9312950	9312950	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gccttggccttgatctcctgCgtcagctgctgggtttcatt	11	12	3	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	12	9312950	9312950	C	T	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	silent	c.3009	p.T1003	0.000	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	200	0	0	130	108	45.38	-	-	-	T	9312950	C	T	9312950	2	4	481	1	0	0	0	0	0	0	0	1	12952	755	27	1		1	PZP	12	9312950	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	314159	9312950	124538945	37	44154										
C12orf36	0	genome.wustl.edu	37	chr12	13526168	13526168	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tcacatgtcgtctgctggcaTtgatgcctcacatcttcctc	7	14	4	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	12	13526168	13526168	T	G	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	missense	c.387	p.Q129H	0.000	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	265	0	0	264	99	27.27	-	-	-	G	13526168	T	G	13526168	3	3	481	1	0	0	0	0	1	0	0	0	1695	1490	52	5	33	5	C12orf36	12	13526168	Missense_Mutation	SNP	T	TCGA-BH-A0AV-01A-31D-A10Y-09	4213218	13526168	120325727	38	44155										
PTPRR	0	genome.wustl.edu	37	chr12	71054738	71054738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	acctgcagtggacaaccacaGgccctcggccctgggaagca	12	15	0	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	12	71054738	71054738	G	T	SNP	PTPRR	ENST00000283228	human	ensembl	69_37n	-1	known	missense	c.1748	p.P583H	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	108	0	0	70	35	33.33	-	-	-	T	71054738	G	T	71054738	3	4	481	1	0	0	0	0	1	0	0	0	12893	1000	35	4	237	4	PTPRR	12	71054738	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	57528570	71054738	62797157	39	44156										
N4BP2L2	0	genome.wustl.edu	37	chr13	33109915	33109915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cctttacttaccgagacaatGttgttttcccagaaccaggc	7	12	0	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	13	33109915	33109915	G	A	SNP	N4BP2L2	ENST00000267068	human	ensembl	69_37n	-1	known	missense	c.1250	p.T417I	0.997	pfam_Zeta_toxin_domain	pfam_Zeta_toxin_domain	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	61	0	0	28	24	45.28	-	-	-	A	33109915	G	A	33109915	3	1	481	1	0	0	0	0	1	0	0	0	10184	1377	48	4	2382	4	N4BP2L2	13	33109915	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		33109915	82059963	40	44157										
ALG11	0	genome.wustl.edu	37	chr13	52598472	52598472	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tatgttcattatcctactatCagcaccgacatgctctctgt	5	12	3	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	13	52598472	52598472	C	G	SNP	ALG11	ENST00000521508	human	ensembl	69_37n	1	known	missense	c.606	p.I202M	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710	130	0	0	79	65	45.14	-	-	-	G	52598472	C	G	52598472	3	3	481	1	0	0	0	0	1	0	0	0	513	816	29	2	616	2	ALG11	13	52598472	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	19488557	52598472	62571406	41	44158										
NEK5	0	genome.wustl.edu	37	chr13	52701581	52701581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	agtatgctttcccgaaggcaCcttgcccgatggccttaatc	9	13	0	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	13	52701581	52701581	C	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.38	p.G13V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	221	0	0	115	57	33.14	-	-	-	A	52701581	C	A	52701581	3	1	481	1	0	0	0	0	1	0	0	0	10399	507	18	4	2168	4	NEK5	13	52701581	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	103109	52701581	62468297	42	44159										
MGA	0	genome.wustl.edu	37	chr15	42058547	42058547	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tgatatgagagggattcagtAtaaatggaaagagagtgaat	13	1	1	4			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	15	42058547	42058547	A	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.8267	p.Y2756C	0.218	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	70	0	0	29	21	42	-	-	-	G	42058547	A	G	42058547	3	3	481	1	0	0	0	0	1	0	0	0	9611	449	16	5	8357	5	MGA	15	42058547	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09		42058547	60472845	43	44160										
WDR76	0	genome.wustl.edu	37	chr15	44134845	44134845	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gccaagtagtaagaacactgAgaagggattatctagcatta	10	6	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	15	44134845	44134845	A	C	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	missense	c.854	p.E285A	0.013	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	139	0	0	64	28	30.43	-	-	-	C	44134845	A	C	44134845	3	2	481	1	0	0	0	0	1	0	0	0	17423	304	11	5	880	5	WDR76	15	44134845	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	2076298	44134845	58396547	44	44161										
SPG11	0	genome.wustl.edu	37	chr15	44905735	44905735	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gacaattttcaggactaagtCtgtatataaaacaaacaaaa	5	6	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	15	44905735	44905735	C	A	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	splice_site	c.3039-1	e17-1	1.000	-	-	-	no_errors	SPG11	HGNC	ENSG00000104133	146	0	0	89	14	13.59	-	-	-	A	44905735	C	A	44905735	5	1	481	1	0	0	0	0	0	0	1	0	15132	927	32	2	4389	2	SPG11	15	44905735	Splice_Site	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	770890	44905735	57625657	45	44162										
FAH	0	genome.wustl.edu	37	chr15	80454634	80454634	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cggcagcatgctaccaacgtCggaatcatgttcagggacaa	11	11	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	15	80454634	80454634	C	G	SNP	FAH	ENST00000261755	human	ensembl	69_37n	1	known	silent	c.411	p.V137	0.032	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876	183	0	0	177	38	17.67	-	-	-	G	80454634	C	G	80454634	2	3	481	1	0	0	0	0	0	0	0	1	5411	871	31	3		3	FAH	15	80454634	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	35548899	80454634	22076758	46	44163										
TRAF7	0	genome.wustl.edu	37	chr16	2222552	2222552	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gctcaggatgaacctggaggCccacctcaaggagtgcgagc	14	12	2	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	16	2222552	2222552	C	A	SNP	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	missense	c.746	p.A249D	1.000	superfamily_TRAF-like,pfscan_Znf_TRAF	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	11	0	0	6	7	53.85	-	-	-	A	2222552	C	A	2222552	3	1	481	1	0	0	0	0	1	0	0	0	16542	739	26	4	776	4	TRAF7	16	2222552	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09		2222552	88132201	47	44164										
ATXN2L	0	genome.wustl.edu	37	chr16	28845927	28845927	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ccgcctctggtggctgccacGccctattcttcctacatccc	7	19	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	16	28845927	28845927	G	C	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	silent	c.2346	p.T782	0.674	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	63	0	0	68	9	11.54	-	-	-	C	28845927	G	C	28845927	2	2	481	1	0	0	0	0	0	0	0	1	1216	1074	38	3		3	ATXN2L	16	28845927	Silent	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	26623375	28845927	61508826	48	44165										
NLRC5	0	genome.wustl.edu	37	chr16	57092939	57092940	+	Frame_Shift_Ins	INS	-	-	TGTA													0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gtacctgctggagacactgcINScctcctgcccacgtgtccgg							TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	16	57092939	57092940	-	TGTA	INS	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	frame_shift_ins	c.3886_3887	p.P1296fs	0.779:0.769	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	148	0	0	65	40	38.1	-	-	-	TGTA	57092940	-	TGTA	57092939	7	5	481	1	0	1	1	0	0	0	0	0	10542	739	26	0	3992	0	NLRC5	16	57092939	Frame_Shift_Ins	INS	-	TCGA-BH-A0AV-01A-31D-A10Y-09	28247012	57092939	33261814	49	44166	356	2								
NLRC5	0	genome.wustl.edu	37	chr16	57092943	57092943	+	Missense_Mutation	SNP	C	C	G													0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cctgctggagacactgccctCctgcccacgtgtccgggagg							TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	16	57092943	57092943	C	G	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.3890	p.S1297C	0.383	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	144	0	0	62	42	40	-	-	-	G	57092943	C	G	57092943	3	3	481	1	0	0	0	0	1	0	0	0	10542	855	30	2	3996	2	NLRC5	16	57092943	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	4	57092943	33261810	50	44167	356	2								
CCDC103	0	genome.wustl.edu	37	chr17	42978466	42978466	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	aacgggagaatgctgccaagTtacgggcagtggaacagagg	16	7	0	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	17	42978466	42978466	T	A	SNP	CCDC103	ENST00000410006	human	ensembl	69_37n	1	known	missense	c.100	p.L34I	0.993	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131	125	0	0	62	30	32.61	-	-	-	A	42978466	T	A	42978466	3	1	481	1	0	0	0	0	1	0	0	0	2763	1722	60	5	102	5	CCDC103	17	42978466	Missense_Mutation	SNP	T	TCGA-BH-A0AV-01A-31D-A10Y-09		42978466	38216744	51	44168										
PCYT2	0	genome.wustl.edu	37	chr17	79864664	79864664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tcgaaggcaccagccacataGatgactgtctcccctggctg	10	14	1	2			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	17	79864664	79864664	G	C	SNP	PCYT2	ENST00000538721	human	ensembl	69_37n	-1	known	missense	c.702	p.I234M	1.000	tigrfam_Cyt_trans-rel	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT2	HGNC	ENSG00000185813	57	0	0	54	15	21.74	-	-	-	C	79864664	G	C	79864664	3	2	481	1	0	0	0	0	1	0	0	0	11685	932	33	2	549	2	PCYT2	17	79864664	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	36886198	79864664	1330546	52	44169										
PNMAL1	0	genome.wustl.edu	37	chr19	46973872	46973872	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tgcccagttctctgggggctGatgctggttctgggacaggg	17	9	2	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	46973872	46973872	G	A	SNP	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	nonsense	c.421	p.Q141*	0.008	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	42	0	0	37	13	26	-	-	-	A	46973872	G	A	46973872	4	1	481	1	0	0	0	0	0	1	0	0	12231	1299	45	2	928	2	PNMAL1	19	46973872	Nonsense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		46973872	12155111	53	44170										
PTH2	0	genome.wustl.edu	37	chr19	49926530	49926531	+	In_Frame_Ins	INS	-	-	CAG													0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	cggacgccccagggcaccacINScagcagcagcagcagcagca							TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	49926530	49926531	-	CAG	INS	PTH2	ENST00000270631	human	ensembl	69_37n	-1	known	in_frame_ins	c.67_66	p.22in_frame_insL	0.016:0.016	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538	15	0	0	13	3	18.75	-	-	-	CAG	49926531	-	CAG	49926530	7	5	481	1	0	1	1	0	0	0	0	0	12840	507	18	0	243	0	PTH2	19	49926530	In_Frame_Ins	INS	-	TCGA-BH-A0AV-01A-31D-A10Y-09	2952658	49926530	9202453	54	44171										
LRRC4B	0	genome.wustl.edu	37	chr19	51021954	51021954	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ggccggcgggcgcatgacagCgggcgcagcacgtcgtgttg	19	12	0	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	51021954	51021954	C	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.1016	p.R339L	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	70	0	0	43	19	30.16	-	-	-	A	51021954	C	A	51021954	3	1	481	1	0	0	0	0	1	0	0	0	9073	768	27	3	1129	3	LRRC4B	19	51021954	Missense_Mutation	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	1095424	51021954	8107029	55	44172										
ZNF578	0	genome.wustl.edu	37	chr19	53014843	53014843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	aaaccttacaagtgtaatgaAtgtggcaaggcttttaatca	8	6	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	53014843	53014843	A	C	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.1209	p.E403D	0.049	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	135	0	0	105	40	27.59	-	-	-	C	53014843	A	C	53014843	3	2	481	1	0	0	0	0	1	0	0	0	18106	98	4	5	1219	5	ZNF578	19	53014843	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09	1992889	53014843	6114140	56	44173										
DPRX	0	genome.wustl.edu	37	chr19	54139920	54139920	+	Frame_Shift_Del	DEL	C	C	-													0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tattcatcaaaaacaagaaaCtccacaaccgccaataccag							TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	54139920	54139920	C	-	DEL	DPRX	ENST00000376650	human	ensembl	69_37n	1	known	frame_shift_del	c.254	p.T85fs	0.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DPRX	HGNC	ENSG00000204595	65	0	0	64	12	15.38	-	-	-	-	54139920	C	-	54139920	7	5	481	1	0	1	0	1	0	0	0	0	4773	565	20	0	264	0	DPRX	19	54139920	Frame_Shift_Del	DEL	C	TCGA-BH-A0AV-01A-31D-A10Y-09	1125077	54139920	4989063	57	44174										
ZNF8	0	genome.wustl.edu	37	chr19	58790466	58790466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gcatggaccccgaggacgaaGgggtagcgggagtgatgtct	18	8	1	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	19	58790466	58790466	G	A	SNP	ZNF8	ENST00000196548	human	ensembl	69_37n	1	known	missense	c.19	p.G7R	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	HGNC	ENSG00000083842	57	0	0	41	5	10.87	-	-	-	A	58790466	G	A	58790466	3	1	481	1	0	0	0	0	1	0	0	0	18260	1000	35	4	21	4	ZNF8	19	58790466	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09	4650546	58790466	338517	58	44175										
COL20A1	0	genome.wustl.edu	37	chr20	61942976	61942976	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tgggacgtcatgtctctgcaGgtgcaggtcgggcggcccga	17	11	2	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	20	61942976	61942976	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	splice_site	c.1540-1	e12-1	0.999	-	-	-	no_errors	COL20A1	HGNC	ENSG00000101203	25	0	0	13	10	43.48	-	-	-	A	61942976	G	A	61942976	5	1	481	1	0	0	0	0	0	0	1	0	3709	1014	35	4	1585	4	COL20A1	20	61942976	Splice_Site	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		61942976	1082544	59	44176										
PRIC285	0	genome.wustl.edu	37	chr20	62197238	62197238	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	tcggccaggtcccctactggCtctggggcagcctcccagtt	12	16	1	0			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	20	62197238	62197238	C	T	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	silent	c.2937	p.E979	0.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	8	0	0	7	4	36.36	-	-	-	T	62197238	C	T	62197238	2	4	481	1	0	0	0	0	0	0	0	1	12566	796	28	4		4	PRIC285	20	62197238	Silent	SNP	C	TCGA-BH-A0AV-01A-31D-A10Y-09	254262	62197238	828282	60	44177										
CHEK2	0	genome.wustl.edu	37	chr22	29115457	29115457	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	gactgatcatctacagtcagAtcaaaaaagacaaaaactaa	5	8	4	3			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	22	29115457	29115457	A	C	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.738	p.D246E	1.000	superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	70	0	0	72	20	21.74	-	-	-	C	29115457	A	C	29115457	3	2	481	1	0	0	0	0	1	0	0	0	3364	330	12	5	1066	5	CHEK2	22	29115457	Missense_Mutation	SNP	A	TCGA-BH-A0AV-01A-31D-A10Y-09		29115457	22189109	61	44178										
KLHL13	0	genome.wustl.edu	37	chrX	117033310	117033310	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.147540983606557	9	0.153204122760375	1.91073968705548	3.14210526315789	1.07117224880383	0.369849964277209	0.990584086731441	0	ggatccatttgtcagtatcaGggtcaaagcacatgagctcc	10	10	3	1			TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9032b7fe-e38a-4641-a45e-67041668adc4	3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94	X	117033310	117033310	G	C	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.1538	p.P513R	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	143	0	0	119	45	27.44	-	-	-	C	117033310	G	C	117033310	3	2	481	1	0	0	0	0	1	0	0	0	8422	1000	35	4	442	4	KLHL13	23	117033310	Missense_Mutation	SNP	G	TCGA-BH-A0AV-01A-31D-A10Y-09		117033310	38237250	62	44179										
TMEM50A	0	genome.wustl.edu	37	chr1	25667009	25667009	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctagagggcttgagatgctCagaatgcattgactgggggg	16	6	2	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	25667009	25667009	C	T	SNP	TMEM50A	ENST00000374358	human	ensembl	69_37n	1	known	missense	c.32	p.S11L	1.000	pfam_UPF0220	pfam_UPF0220	-	no_errors	TMEM50A	HGNC	ENSG00000183726	72	0	0	80	18	18.37	-	-	-	T	25667009	C	T	25667009	3	4	482	1	0	0	0	0	1	0	0	0	16270	838	29	2	34	2	TMEM50A	1	25667009	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		25667009	223583612	1	44180										
CCDC28B	0	genome.wustl.edu	37	chr1	32669526	32669526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcctggctggaggtggaagcGgctctgcaggcacgcccctg	16	13	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	32669526	32669526	G	T	SNP	CCDC28B	ENST00000373602	human	ensembl	69_37n	1	known	missense	c.211	p.G71C	0.989	NULL	NULL	-	no_errors	CCDC28B	HGNC	ENSG00000160050	45	0	0	21	9	30	-	-	-	T	32669526	G	T	32669526	3	4	482	1	0	0	0	0	1	0	0	0	2829	1116	39	3	217	3	CCDC28B	1	32669526	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	7002517	32669526	216581095	2	44181										
ERMAP	0	genome.wustl.edu	37	chr1	43296636	43296636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aagatctgatgccggaatatAaggggaggacggtgctagtg	16	5	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	43296636	43296636	A	G	SNP	ERMAP	ENST00000372514	human	ensembl	69_37n	1	known	missense	c.283	p.K95E	0.280	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010	48	0	0	34	15	30.61	-	-	-	G	43296636	A	G	43296636	3	3	482	1	0	0	0	0	1	0	0	0	5271	363	13	5	289	5	ERMAP	1	43296636	Missense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09	10627110	43296636	205953985	3	44182										
CPT2	0	genome.wustl.edu	37	chr1	53676541	53676541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcagacccctgccgtcactCcacagagccagccagctacc	7	20	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	53676541	53676541	C	T	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	1	known	missense	c.1195	p.P399S	0.995	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	104	0	0	56	23	29.11	-	-	-	T	53676541	C	T	53676541	3	4	482	1	0	0	0	0	1	0	0	0	3864	855	30	2	1209	2	CPT2	1	53676541	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	10379905	53676541	195574080	4	44183										
TCHH	0	genome.wustl.edu	37	chr1	152082392	152082392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcccgctcctggcgccttcTcttctccggttcctctctca	6	20	4	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	152082392	152082392	T	C	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3301	p.R1101G	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	333	0	0	437	110	20.11	-	-	-	C	152082392	T	C	152082392	3	2	482	1	0	0	0	0	1	0	0	0	15795	1559	54	5	2534	5	TCHH	1	152082392	Missense_Mutation	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09	98405851	152082392	97168229	5	44184										
S100A6	0	genome.wustl.edu	37	chr1	153507273	153507273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cttgttccggtccaagtcttCcatcagccttgcaatttcag	7	13	3	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	153507273	153507273	C	T	SNP	S100A6	ENST00000368719	human	ensembl	69_37n	-1	known	missense	c.172	p.E58K	0.971	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100A6	HGNC	ENSG00000197956	175	0	0	86	21	19.63	-	-	-	T	153507273	C	T	153507273	3	4	482	1	0	0	0	0	1	0	0	0	13868	864	30	2	104	2	S100A6	1	153507273	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	1424881	153507273	95743348	6	44185										
RXFP4	0	genome.wustl.edu	37	chr1	155912498	155912498	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctgcggttgaggctgtggcCccagggcggaggctgggtgc	20	10	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	155912498	155912498	C	A	SNP	RXFP4	ENST00000368318	human	ensembl	69_37n	1	known	missense	c.998	p.P333H	0.007	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080	26	0	0	28	7	20	-	-	-	A	155912498	C	A	155912498	3	1	482	1	0	0	0	0	1	0	0	0	13848	623	22	4	1000	4	RXFP4	1	155912498	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	2405225	155912498	93338123	7	44186										
OR6K2	0	genome.wustl.edu	37	chr1	158670357	158670357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	catagatgaagagcagtggaAcaaagcagacaacagactta	10	7	0	5			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	158670357	158670357	A	G	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	missense	c.86	p.V29A	0.767	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	445	0	0	491	58	10.56	-	-	-	G	158670357	A	G	158670357	3	3	482	1	0	0	0	0	1	0	0	0	11275	43	2	5	892	5	OR6K2	1	158670357	Missense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09	2757859	158670357	90580264	8	44187										
IFI16	0	genome.wustl.edu	37	chr1	159021525	159021525	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tccatagaagacagtgcccaGagtgacctcaaagaagtgat	10	9	1	6			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	159021525	159021525	G	A	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	silent	c.1722	p.Q574	0.000	pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	62	0	0	108	17	13.6	-	-	-	A	159021525	G	A	159021525	2	1	482	1	0	0	0	0	0	0	0	1	7565	933	33	2		2	IFI16	1	159021525	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	351168	159021525	90229096	9	44188										
DDR2	0	genome.wustl.edu	37	chr1	162724596	162724596	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	catgtacaagatcaattacaGtcgggatggcactcgctgga	11	9	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	162724596	162724596	G	T	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.368	p.S123I	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	101	0	0	135	38	21.97	-	-	-	T	162724596	G	T	162724596	3	4	482	1	0	0	0	0	1	0	0	0	4368	1029	36	4	378	4	DDR2	1	162724596	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	3703071	162724596	86526025	10	44189										
PAPPA2	0	genome.wustl.edu	37	chr1	176811528	176811528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcccctaggtcattccatttGctgctgactgtgacctggat	9	12	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	176811528	176811528	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.5314	p.A1772T	1.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	78	0	0	62	21	24.71	-	-	-	A	176811528	G	A	176811528	3	1	482	1	0	0	0	0	1	0	0	0	11506	1319	46	4	5453	4	PAPPA2	1	176811528	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	14086932	176811528	72439093	11	44190										
CEP350	0	genome.wustl.edu	37	chr1	179989393	179989393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctggatcgtattgaagccttGaaagcaacagctgcttcttt	9	9	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	179989393	179989393	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.2484	p.L828F	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	396	0	0	339	46	11.86	-	-	-	C	179989393	G	C	179989393	3	2	482	1	0	0	0	0	1	0	0	0	3283	1281	45	2	2526	2	CEP350	1	179989393	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	3177865	179989393	69261228	12	44191										
CACNA1E	0	genome.wustl.edu	37	chr1	181726188	181726188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcttctttgtcaatatctttGtggctctcatcatcatcacc	4	12	8	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	181726188	181726188	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.4255	p.V1419L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	132	1	0.75	197	24	10.86	-	-	-	T	181726188	G	T	181726188	3	4	482	1	0	0	0	0	1	0	0	0	2567	1377	48	4	4373	4	CACNA1E	1	181726188	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	1736795	181726188	67524433	13	44192										
EXO1	0	genome.wustl.edu	37	chr1	242016718	242016718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ttcgtgaggggaaagtctcgGaagctcgagagtgtttcacc	14	8	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	1	242016718	242016718	G	A	SNP	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	missense	c.340	p.E114K	1.000	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	120	0	0	91	13	12.5	-	-	-	A	242016718	G	A	242016718	3	1	482	1	0	0	0	0	1	0	0	0	5336	1175	41	2	350	2	EXO1	1	242016718	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	60290530	242016718	7233903	14	44193										
ASAP2	0	genome.wustl.edu	37	chr2	9531255	9531255	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gtaagtgtggacggtggaagCcggcagcgatcttcgtcaga	16	8	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	9531255	9531255	C	T	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	silent	c.2448	p.S816	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	139	0	0	128	61	32.28	-	-	-	T	9531255	C	T	9531255	2	4	482	1	0	0	0	0	0	0	0	1	1015	738	26	4		4	ASAP2	2	9531255	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		9531255	233668118	15	44194										
SDC1	0	genome.wustl.edu	37	chr2	20403830	20403831	+	Frame_Shift_Ins	INS	-	-	G													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgtgtggtctccctgggtcINSggggggtggcctcctgctcc							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	20403830	20403831	-	G	INS	SDC1	ENST00000254351	human	ensembl	69_37n	-1	known	frame_shift_ins	c.371_370	p.R124fs	0.001:0.001	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884	33	0	0	23	4	14.81	-	-	-	G	20403831	-	G	20403830	7	5	482	1	0	1	1	0	0	0	0	0	14039	884	31	0	573	0	SDC1	2	20403830	Frame_Shift_Ins	INS	-	TCGA-BH-A0AW-01A-11W-A071-09	10872575	20403830	222795543	16	44195										
ITSN2	0	genome.wustl.edu	37	chr2	24469072	24469072	+	Frame_Shift_Del	DEL	T	T	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gaccagtcaccccgttgatcTctccttgccaccaatcagga							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	24469072	24469072	T	-	DEL	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	frame_shift_del	c.3503	p.E1168fs	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	181	0	0	153	22	12.36	-	-	-	-	24469072	T	-	24469072	7	5	482	1	0	1	0	1	0	0	0	0	7981	1551	54	0	1689	0	ITSN2	2	24469072	Frame_Shift_Del	DEL	T	TCGA-BH-A0AW-01A-11W-A071-09	4065242	24469072	218730301	17	44196										
DNAJC27	0	genome.wustl.edu	37	chr2	25180735	25180735	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gtttccatgaggtccaagctCttgcttcatttctgccagcc	8	13	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	25180735	25180735	C	A	SNP	DNAJC27	ENST00000264711	human	ensembl	69_37n	-1	known	nonsense	c.349	p.E117*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_DnaJ_N,pfam_ProtSyn_GTP-bd,superfamily_DnaJ_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_DnaJ_N,pfscan_DnaJ_N,prints_Small_GTPase,prints_Hsp_DnaJ,tigrfam_Small_GTP-bd_dom	-	no_errors	DNAJC27	HGNC	ENSG00000115137	175	0	0	198	41	17.08	-	-	-	A	25180735	C	A	25180735	4	1	482	1	0	0	0	0	0	1	0	0	4680	922	32	2	488	2	DNAJC27	2	25180735	Nonsense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	711663	25180735	218018638	18	44197										
RGPD4	0	genome.wustl.edu	37	chr2	108487659	108487659	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtattcacagggggtaaaaCtatttagatttgatgctgag	11	4	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	108487659	108487659	C	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	silent	c.3199	p.L1067	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	615	0	0	405	184	31.24	-	-	-	T	108487659	C	T	108487659	2	4	482	1	0	0	0	0	0	0	0	1	13371	564	20	4		4	RGPD4	2	108487659	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	83306924	108487659	134711714	19	44198										
ANAPC1	0	genome.wustl.edu	37	chr2	112619981	112619981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caaaccttatattagtaatcGtttctgtccacaaatggtca	5	9	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	112619981	112619981	G	A	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.1247	p.T416M	0.027	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	37	0	0	34	5	12.82	-	-	-	A	112619981	G	A	112619981	3	1	482	1	0	0	0	0	1	0	0	0	598	1145	40	1	4743	1	ANAPC1	2	112619981	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4132322	112619981	130579392	20	44199										
TTN	0	genome.wustl.edu	37	chr2	179612700	179612700	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	acatcacctctgtggtcttcCaaagtggcatctgtatattc	7	11	4	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	179612700	179612700	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	silent	c.14427	p.L4809	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	122	0	0	88	40	31.25	-	-	-	T	179612700	C	T	179612700	2	4	482	1	0	0	0	0	0	0	0	1	16832	593	21	4		4	TTN	2	179612700	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	66992719	179612700	63586673	21	44200										
COL5A2	0	genome.wustl.edu	37	chr2	189950468	189950468	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tggtccaggatcaccaggttCaccaggaggtcctgtaggtc	13	11	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	189950468	189950468	C	T	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.721	p.E241K	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	89	0	0	86	28	24.56	-	-	-	T	189950468	C	T	189950468	3	4	482	1	0	0	0	0	1	0	0	0	3727	835	29	2	3958	2	COL5A2	2	189950468	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	10337768	189950468	53248905	22	44201										
ANKAR	0	genome.wustl.edu	37	chr2	190569785	190569785	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccttgctgcacaggcttgctCattagaaacaacagtttgtc	8	11	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	190569785	190569785	C	G	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	nonsense	c.1745	p.S582*	0.997	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	237	0	0	222	37	14.29	-	-	-	G	190569785	C	G	190569785	4	3	482	1	0	0	0	0	0	1	0	0	623	838	29	2	1771	2	ANKAR	2	190569785	Nonsense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	619317	190569785	52629588	23	44202										
CTLA4	0	genome.wustl.edu	37	chr2	204737449	204737449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agctaaagaaaagaagccctCttacaacaggggtctatgtg	10	8	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	204737449	204737449	C	G	SNP	CTLA4	ENST00000302823	human	ensembl	69_37n	1	known	missense	c.586	p.L196V	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,prints_CTLA4	-	no_errors	CTLA4	HGNC	ENSG00000163599	234	0	0	275	37	11.82	-	-	-	G	204737449	C	G	204737449	3	3	482	1	0	0	0	0	1	0	0	0	4043	913	32	2	600	2	CTLA4	2	204737449	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	14167664	204737449	38461924	24	44203										
SH3BP4	0	genome.wustl.edu	37	chr2	235951351	235951351	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gccaccactacaaagtacccGactttccaggaccgcccggt	8	17	0	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	2	235951351	235951351	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	silent	c.1938	p.P646	0.003	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	126	0	0	31	22	41.51	-	-	-	A	235951351	G	A	235951351	2	1	482	1	0	0	0	0	0	0	0	1	14334	1045	37	1		1	SH3BP4	2	235951351	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	31213902	235951351	7248022	25	44204										
GOLGA4	0	genome.wustl.edu	37	chr3	37357021	37357021	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aaactatcgaaaaaacaagtGaggaggaacgcatcagtctt	9	7	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	37357021	37357021	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.1345	p.E449K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	183	0	0	161	30	15.71	-	-	-	A	37357021	G	A	37357021	3	1	482	1	0	0	0	0	1	0	0	0	6607	1291	45	2	1457	2	GOLGA4	3	37357021	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		37357021	160665409	26	44205										
GBE1	0	genome.wustl.edu	37	chr3	81584455	81584455	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agcaatgatcttattgccttCatgtttttcactcacgtagg	7	9	4	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	81584455	81584455	C	T	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.1825	p.E609K	1.000	pfam_A-amylase_b_C	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	70	0	0	44	9	16.98	-	-	-	T	81584455	C	T	81584455	3	4	482	1	0	0	0	0	1	0	0	0	6320	835	29	2	295	2	GBE1	3	81584455	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	44227434	81584455	116437975	27	44206										
DCBLD2	0	genome.wustl.edu	37	chr3	98518306	98518306	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggcacctggtacaccaattcGtctggggcaggtagacctgg	14	11	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	98518306	98518306	G	A	SNP	DCBLD2	ENST00000326857	human	ensembl	69_37n	-1	known	silent	c.2280	p.D760	0.035	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_LCCL,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019	487	0	0	445	97	17.9	-	-	-	A	98518306	G	A	98518306	2	1	482	1	0	0	0	0	0	0	0	1	4312	1136	40	1		1	DCBLD2	3	98518306	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	16933851	98518306	99504124	28	44207										
SLC12A8	0	genome.wustl.edu	37	chr3	124826851	124826851	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tagtccactgcaacgtatgtCagcatgaagttgatggtgac	11	8	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	124826851	124826851	C	T	SNP	SLC12A8	ENST00000423114	human	ensembl	69_37n	-1	known	silent	c.1266	p.L422	1.000	pfam_AA-permease_dom	pfam_AA-permease_dom,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SLC12A8	HGNC	ENSG00000221955	174	0	0	117	21	15.22	-	-	-	T	124826851	C	T	124826851	2	4	482	1	0	0	0	0	0	0	0	1	14478	813	29	2		2	SLC12A8	3	124826851	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	26308545	124826851	73195579	29	44208										
TMCC1	0	genome.wustl.edu	37	chr3	129389511	129389511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	acttgcccttcctctaaagaGtccttcaggttggggatgtt	10	10	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	129389511	129389511	G	C	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1173	p.D391E	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	157	0	0	106	18	14.52	-	-	-	C	129389511	G	C	129389511	3	2	482	1	0	0	0	0	1	0	0	0	16087	1020	36	4	800	4	TMCC1	3	129389511	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4562660	129389511	68632919	30	44209										
HPS3	0	genome.wustl.edu	37	chr3	148871407	148871407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cagaacctgaagccattccaGagagaagacagtcacccaag	9	12	1	5			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	148871407	148871407	G	C	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.1372	p.E458Q	1.000	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	221	0	0	160	27	14.44	-	-	-	C	148871407	G	C	148871407	3	2	482	1	0	0	0	0	1	0	0	0	7391	943	33	2	1398	2	HPS3	3	148871407	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	19481896	148871407	49151023	31	44210										
B3GALNT1	0	genome.wustl.edu	37	chr3	160804170	160804170	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caatgccaacattttgtcttCcttttcagcctcttggccta	5	13	3	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	160804170	160804170	C	G	SNP	B3GALNT1	ENST00000320474	human	ensembl	69_37n	-1	known	missense	c.373	p.E125Q	0.717	pfam_Glyco_trans_31	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GALNT1	HGNC	ENSG00000169255	271	1	0.37	215	30	12.24	-	-	-	G	160804170	C	G	160804170	3	3	482	1	0	0	0	0	1	0	0	0	1249	864	30	2	626	2	B3GALNT1	3	160804170	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	11932763	160804170	37218260	32	44211										
WDR49	0	genome.wustl.edu	37	chr3	167277905	167277905	+	Frame_Shift_Del	DEL	G	G	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccgagtctcatttgcatcaaGggccatagtgctgatttctg							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	167277905	167277905	G	-	DEL	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	frame_shift_del	c.598	p.D201fs	0.992	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	151	0	0	86	15	14.71	-	-	-	-	167277905	G	-	167277905	7	5	482	1	0	1	0	1	0	0	0	0	17399	1000	35	0	1539	0	WDR49	3	167277905	Frame_Shift_Del	DEL	G	TCGA-BH-A0AW-01A-11W-A071-09	6473735	167277905	30744525	33	44212										
LRRIQ4	0	genome.wustl.edu	37	chr3	169539922	169539922	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caggagattcagcgtttaaaGaacatcagggtcctctacct	9	10	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	169539922	169539922	G	C	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	missense	c.213	p.K71N	0.005	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	159	0	0	191	36	15.86	-	-	-	C	169539922	G	C	169539922	3	2	482	1	0	0	0	0	1	0	0	0	9097	933	33	2	215	2	LRRIQ4	3	169539922	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	2262017	169539922	28482508	34	44213										
ECT2	0	genome.wustl.edu	37	chr3	172534566	172534566	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccacggctcagtggagggaaGaagtccttccagcaatgata	12	10	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	3	172534566	172534566	G	A	SNP	ECT2	ENST00000427830	human	ensembl	69_37n	1	known	missense	c.2501	p.R834K	0.997	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	91	0	0	94	15	13.76	-	-	-	A	172534566	G	A	172534566	3	1	482	1	0	0	0	0	1	0	0	0	4936	942	33	2	2587	2	ECT2	3	172534566	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	2994644	172534566	25487864	35	44214										
ZNF718	0	genome.wustl.edu	37	chr4	155296	155296	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcaacccttaatttacataAgagaattcattctgcacaaa	3	10	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	4	155296	155296	A	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.829	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	147	0	0	94	33	25.98	-	-	-	T	155296	A	T	155296	1	4	482	0	1	0	0	0	0	0	0	0	18216	72	3	5		5	ZNF718	4	155296	RNA	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09		155296	190998980	36	44215										
MTTP	0	genome.wustl.edu	37	chr4	100521863	100521863	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtggatttgcttctcatccCaatgaagaactcctgagagc	9	10	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	4	100521863	100521863	C	G	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	silent	c.1209	p.P403	0.465	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	192	0	0	95	34	26.36	-	-	-	G	100521863	C	G	100521863	2	3	482	1	0	0	0	0	0	0	0	1	10036	581	21	4		4	MTTP	4	100521863	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	100366567	100521863	90632413	37	44216										
TRIP13	0	genome.wustl.edu	37	chr5	914588	914588	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgtctccccagtgtcagatCatataccctcgccagcagct	7	16	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	914588	914588	C	G	SNP	TRIP13	ENST00000166345	human	ensembl	69_37n	1	known	missense	c.1029	p.I343M	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase,prints_Chaprnin_ClpA/B	-	no_errors	TRIP13	HGNC	ENSG00000071539	309	0	0	194	30	13.39	-	-	-	G	914588	C	G	914588	3	3	482	1	0	0	0	0	1	0	0	0	16653	816	29	2	1075	2	TRIP13	5	914588	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		914588	180000672	38	44217										
CCT5	0	genome.wustl.edu	37	chr5	10261724	10261724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccccaggttctcagagctcaCagccgagaagctgggctttg	12	13	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	10261724	10261724	C	T	SNP	CCT5	ENST00000280326	human	ensembl	69_37n	1	known	missense	c.1046	p.T349I	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_epsi	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_epsi	-	no_errors	CCT5	HGNC	ENSG00000150753	419	0	0	452	68	13.08	-	-	-	T	10261724	C	T	10261724	3	4	482	1	0	0	0	0	1	0	0	0	2985	478	17	4	1076	4	CCT5	5	10261724	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	9347136	10261724	170653536	39	44218										
TRIO	0	genome.wustl.edu	37	chr5	14399176	14399176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tacctttataaaagcaaattGtttgtaagtataggcgttca	7	5	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	14399176	14399176	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.4611	p.L1537	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	150	0	0	180	35	16.28	-	-	-	A	14399176	G	A	14399176	2	1	482	1	0	0	0	0	0	0	0	1	16648	1368	48	4		4	TRIO	5	14399176	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4137452	14399176	166516084	40	44219										
PAM	0	genome.wustl.edu	37	chr5	102237088	102237088	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	atacttctgcatgtctatgcGaataccagtggatgaggaag	11	7	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	102237088	102237088	G	C	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	missense	c.239	p.R80P	0.987	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	35	0	0	32	4	11.11	-	-	-	C	102237088	G	C	102237088	3	2	482	1	0	0	0	0	1	0	0	0	11485	1058	37	3	249	3	PAM	5	102237088	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	87837912	102237088	78678172	41	44220										
HSD17B4	0	genome.wustl.edu	37	chr5	118835111	118835111	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgggagcgtcaatcaaggatCcaaaagatttgaaatttatt	9	5	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	118835111	118835111	C	G	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.1072	p.P358A	1.000	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	167	0	0	149	25	14.37	-	-	-	G	118835111	C	G	118835111	3	3	482	1	0	0	0	0	1	0	0	0	7437	855	30	2	1122	2	HSD17B4	5	118835111	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	16598023	118835111	62080149	42	44221										
PHF15	0	genome.wustl.edu	37	chr5	133901983	133901983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agcccacggaacccagccagGctggcgaggacctggaaaag	14	13	0	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	133901983	133901983	G	A	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.1195	p.A399T	0.934	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	55	0	0	52	9	14.75	-	-	-	A	133901983	G	A	133901983	3	1	482	1	0	0	0	0	1	0	0	0	11900	1203	42	4	1177	4	PHF15	5	133901983	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	15066872	133901983	47013277	43	44222										
NDUFA2	0	genome.wustl.edu	37	chr5	140025248	140025248	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agttgttcaaagggacattcGtctcttggccaaatgctgaa	10	8	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	140025248	140025248	G	C	SNP	NDUFA2	ENST00000252102	human	ensembl	69_37n	-1	known	missense	c.224	p.T75R	1.000	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH,pirsf_NADH_Ub_cplx-1_asu_su-2	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH,pirsf_NADH_Ub_cplx-1_asu_su-2	-	no_errors	NDUFA2	HGNC	ENSG00000131495	135	0	0	94	22	18.97	-	-	-	C	140025248	G	C	140025248	3	2	482	1	0	0	0	0	1	0	0	0	10336	1145	40	3	79	3	NDUFA2	5	140025248	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	6123265	140025248	40890012	44	44223										
COL23A1	0	genome.wustl.edu	37	chr5	177695751	177695751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cttttcccctttcgggcctgGaagtccctggaaaaggaaag	11	11	0	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	5	177695751	177695751	G	A	SNP	COL23A1	ENST00000390654	human	ensembl	69_37n	-1	known	missense	c.475	p.P159S	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767	34	0	0	26	11	29.73	-	-	-	A	177695751	G	A	177695751	3	1	482	1	0	0	0	0	1	0	0	0	3712	1174	41	2	1239	2	COL23A1	5	177695751	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	37670503	177695751	3219509	45	44224										
MAK	0	genome.wustl.edu	37	chr6	10802211	10802211	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	attactggcattgggaataaGagtttttaagtttataggaa	10	2	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	10802211	10802211	G	C	SNP	MAK	ENST00000313243	human	ensembl	69_37n	-1	known	missense	c.745	p.L249V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAK	HGNC	ENSG00000111837	129	0	0	126	22	14.86	-	-	-	C	10802211	G	C	10802211	3	2	482	1	0	0	0	0	1	0	0	0	9268	942	33	2	1154	2	MAK	6	10802211	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		10802211	160312856	46	44225										
HIVEP1	0	genome.wustl.edu	37	chr6	12121958	12121958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcacgtaggaacggtacacGcccagctacaaaggcagcag	11	13	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	12121958	12121958	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.1930	p.A644T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	151	1	0.66	146	22	13.1	-	-	-	A	12121958	G	A	12121958	3	1	482	1	0	0	0	0	1	0	0	0	7237	1087	38	1	1940	1	HIVEP1	6	12121958	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	1319747	12121958	158993109	47	44226										
OR12D3	0	genome.wustl.edu	37	chr6	29342398	29342398	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggacctgttcttaaacagaaGgaagccaattacatagaagc	9	8	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	29342398	29342398	G	C	SNP	OR12D3	ENST00000377143	human	ensembl	69_37n	-1	known	missense	c.667	p.L223V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462	315	0	0	251	30	10.68	-	-	-	C	29342398	G	C	29342398	3	2	482	1	0	0	0	0	1	0	0	0	11005	1000	35	4	287	4	OR12D3	6	29342398	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	17220440	29342398	141772669	48	44227										
TRIM10	0	genome.wustl.edu	37	chr6	30124770	30124770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggcctgctggggaaagtcccGaatcctctggcccagctctg	13	14	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	30124770	30124770	G	A	SNP	TRIM10	ENST00000449742	human	ensembl	69_37n	-1	known	missense	c.841	p.R281W	0.999	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613	139	0	0	96	27	21.95	-	-	-	A	30124770	G	A	30124770	3	1	482	1	0	0	0	0	1	0	0	0	16582	1057	37	1	704	1	TRIM10	6	30124770	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	782372	30124770	140990297	49	44228										
COL12A1	0	genome.wustl.edu	37	chr6	75833788	75833788	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctggtttctgatccacgcacTgtaatttcttgtccccttgt	7	12	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	75833788	75833788	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.6747	p.T2249	0.944	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	213	0	0	163	27	14.21	-	-	-	C	75833788	T	C	75833788	2	2	482	1	0	0	0	0	0	0	0	1	3699	1567	55	5		5	COL12A1	6	75833788	Silent	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09	45709018	75833788	95281279	50	44229										
COL12A1	0	genome.wustl.edu	37	chr6	75893166	75893166	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	attatatcttcaactttggtGaattttttcaaagtgaactc	5	6	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	75893166	75893166	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.1491	p.F497	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	321	0	0	192	46	19.33	-	-	-	A	75893166	G	A	75893166	2	1	482	1	0	0	0	0	0	0	0	1	3699	1281	45	2		2	COL12A1	6	75893166	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	59378	75893166	95221901	51	44230										
SYNE1	0	genome.wustl.edu	37	chr6	152655294	152655294	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caaatcgagccactgatcatTtaaatgatttatttccttgt	5	8	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	6	152655294	152655294	T	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.12643	p.N4215Y	0.892	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	305	0	0	217	228	51.24	-	-	-	A	152655294	T	A	152655294	3	1	482	1	0	0	0	0	1	0	0	0	15537	1841	64	5	14103	5	SYNE1	6	152655294	Missense_Mutation	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09	76762128	152655294	18459773	52	44231										
CARD11	0	genome.wustl.edu	37	chr7	2979469	2979469	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aacctgctccttcttgggccGattttcaatgtcattcttca	6	12	5	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	2979469	2979469	G	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.778	p.R260	1.000	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	134	1	0.74	118	29	19.73	-	-	-	T	2979469	G	T	2979469	2	4	482	1	0	0	0	0	0	0	0	1	2670	1057	37	3		3	CARD11	7	2979469	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		2979469	156159194	53	44232										
PKD1L1	0	genome.wustl.edu	37	chr7	47897385	47897385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gttgtaatgaagaagggtccGgaactccatctgcccagtgc	12	10	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	47897385	47897385	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.4408	p.R1470W	0.330	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	90	0	0	121	22	15.38	-	-	-	A	47897385	G	A	47897385	3	1	482	1	0	0	0	0	1	0	0	0	12038	1115	39	1	4261	1	PKD1L1	7	47897385	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	44917916	47897385	111241278	54	44233										
SBDS	0	genome.wustl.edu	37	chr7	66453378	66453380	+	In_Frame_Del	DEL	CTT	CTT	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcattcaaatttctcatctcCttcttctacatctttcagat							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	66453378	66453380	CTT	-	DEL	SBDS	ENST00000246868	human	ensembl	69_37n	-1	known	in_frame_del	c.733_731	p.E244in_frame_del	1.000:1.000:1.000	NULL	pfam_Ribosome_mat_SBDS_C,pfam_Ribosome_mat_SBDS_N,superfamily_Ribosome_mat_SBDS_N,tigrfam_Ribosome_maturation_pr_SBDS	-	no_errors	SBDS	HGNC	ENSG00000126524	108	0	0	119	17	12.5	-	-	-	-	66453380	CTT	-	66453378	7	5	482	1	0	1	0	1	0	0	0	0	13944	690	24	0	23	0	SBDS	7	66453378	In_Frame_Del	DEL	CTT	TCGA-BH-A0AW-01A-11W-A071-09	18555993	66453378	92685285	55	44234										
ABCB4	0	genome.wustl.edu	37	chr7	87051523	87051523	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cttctgctgcttcactgcatCatcgcctggtccaaaaatct	6	14	4	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	87051523	87051523	C	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.2230	p.D744N	0.398	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	92	0	0	158	27	14.59	-	-	-	T	87051523	C	T	87051523	3	4	482	1	0	0	0	0	1	0	0	0	43	826	29	2	1674	2	ABCB4	7	87051523	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	20598145	87051523	72087140	56	44235										
TNPO3	0	genome.wustl.edu	37	chr7	128658066	128658066	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctggatatgggttagcaatGagtcccgtaaagaggcatga	13	6	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	128658066	128658066	G	A	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.266	p.S89L	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	145	0	0	175	40	18.6	-	-	-	A	128658066	G	A	128658066	3	1	482	1	0	0	0	0	1	0	0	0	16432	1294	45	2	2589	2	TNPO3	7	128658066	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	41606543	128658066	30480597	57	44236										
CPA1	0	genome.wustl.edu	37	chr7	130023271	130023271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agcgtccagccatctggatcGacacgggcatccattcccgg	11	15	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	130023271	130023271	G	A	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.523	p.D175N	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	30	0	0	32	8	20	-	-	-	A	130023271	G	A	130023271	3	1	482	1	0	0	0	0	1	0	0	0	3819	1058	37	1	541	1	CPA1	7	130023271	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	1365205	130023271	29115392	58	44237										
TRPV6	0	genome.wustl.edu	37	chr7	142573242	142573242	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgaagtagcttctgctgtaaGagggtgttgtcccgggggct	16	7	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	7	142573242	142573242	G	C	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	silent	c.1101	p.L367	0.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	90	0	0	69	10	12.66	-	-	-	C	142573242	G	C	142573242	2	2	482	1	0	0	0	0	0	0	0	1	16696	929	33	2		2	TRPV6	7	142573242	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	12549971	142573242	16565421	59	44238										
EBF2	0	genome.wustl.edu	37	chr8	25715895	25715895	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tggtgaacctggaacacccaAgttggccatggggacattgc	13	10	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	25715895	25715895	A	C	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.1468	p.L490V	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	120	0	0	88	15	14.56	-	-	-	C	25715895	A	C	25715895	3	2	482	1	0	0	0	0	1	0	0	0	4916	69	3	5	271	5	EBF2	8	25715895	Missense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09		25715895	120648127	60	44239										
TEX15	0	genome.wustl.edu	37	chr8	30700081	30700081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agcaaatgaatagcatatgaGcaattaacagcttcattata	6	6	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	30700081	30700081	G	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.6453	p.C2151	0.007	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	142	0	0	103	15	12.71	-	-	-	A	30700081	G	A	30700081	2	1	482	1	0	0	0	0	0	0	0	1	15874	963	34	4		4	TEX15	8	30700081	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4984186	30700081	115663941	61	44240										
HGSNAT	0	genome.wustl.edu	37	chr8	43047544	43047544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	accgcctgctgctgggagacGatcacctttaccagcaccca	9	16	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	43047544	43047544	G	A	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1432	p.D478N	0.000	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	37	0	0	24	4	14.29	-	-	-	A	43047544	G	A	43047544	3	1	482	1	0	0	0	0	1	0	0	0	7139	1058	37	1	1398	1	HGSNAT	8	43047544	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	12347463	43047544	103316478	62	44241										
ZFHX4	0	genome.wustl.edu	37	chr8	77764171	77764174	+	Frame_Shift_Del	DEL	AAAA	AAAA	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tagatgccaaagaattaaatAaaaagcaaactcctgattta							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	77764171	77764174	AAAA	-	DEL	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	frame_shift_del	c.5014_5017	p.K1672fs	1.000:1.000:1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	424	0	0	354	147	29.34	-	-	-	-	77764174	AAAA	-	77764171	7	5	482	1	0	1	0	1	0	0	0	0	17731	363	13	0	5048	0	ZFHX4	8	77764171	Frame_Shift_Del	DEL	AAAA	TCGA-BH-A0AW-01A-11W-A071-09	34716627	77764171	68599851	63	44242										
PAG1	0	genome.wustl.edu	37	chr8	81897162	81897162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aatttccaaggatactctctAcattaacactttgacgacat	4	10	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	81897162	81897162	A	G	SNP	PAG1	ENST00000220597	human	ensembl	69_37n	-1	known	missense	c.725	p.V242A	0.015	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641	191	1	0.52	132	142	51.82	-	-	-	G	81897162	A	G	81897162	3	3	482	1	0	0	0	0	1	0	0	0	11461	391	14	5	585	5	PAG1	8	81897162	Missense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09	4132991	81897162	64466860	64	44243										
DECR1	0	genome.wustl.edu	37	chr8	91029554	91029554	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcagtgcgtgatagccagccGgtaagtcccttacatcaagc	10	12	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	91029554	91029554	G	C	SNP	DECR1	ENST00000220764	human	ensembl	69_37n	1	known	missense	c.272	p.R91P	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325	162	0	0	151	20	11.7	-	-	-	C	91029554	G	C	91029554	3	2	482	1	0	0	0	0	1	0	0	0	4413	1130	39	3	278	3	DECR1	8	91029554	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	9132392	91029554	55334468	65	44244										
PDP1	0	genome.wustl.edu	37	chr8	94934414	94934414	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	catcgtacattcctcagagtCgactgagatacacacctcat	6	13	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	94934414	94934414	C	T	SNP	PDP1	ENST00000396200	human	ensembl	69_37n	1	known	nonsense	c.202	p.R68*	0.678	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PDP1	HGNC	ENSG00000164951	124	0	0	111	23	17.16	-	-	-	T	94934414	C	T	94934414	4	4	482	1	0	0	0	0	0	1	0	0	11758	876	31	1	310	1	PDP1	8	94934414	Nonsense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	3904860	94934414	51429608	66	44245										
TG	0	genome.wustl.edu	37	chr8	133899016	133899016	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ttaccaccaacccaaagagaCtccagcaaaacctttttgga	5	13	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	133899016	133899016	C	G	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.1399	p.L467V	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	309	0	0	258	42	14	-	-	-	G	133899016	C	G	133899016	3	3	482	1	0	0	0	0	1	0	0	0	15908	565	20	4	1433	4	TG	8	133899016	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	38964602	133899016	12465006	67	44246										
SLC45A4	0	genome.wustl.edu	37	chr8	142221699	142221700	+	Frame_Shift_Ins	INS	-	-	T													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccacattgtggaaaagaaaaINSttttttttctaaaataatca							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	8	142221699	142221700	-	T	INS	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2399_2398	p.I800fs	0.000:0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	48	0	0	18	3	14.29	-	-	-	T	142221700	-	T	142221699	7	5	482	1	0	1	1	0	0	0	0	0	14732	101	4	0	161	0	SLC45A4	8	142221699	Frame_Shift_Ins	INS	-	TCGA-BH-A0AW-01A-11W-A071-09	8322683	142221699	4142323	68	44247										
DOCK8	0	genome.wustl.edu	37	chr9	434905	434905	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gtgcctggtgcacgccgctgCgttagtggctgagtatctga	15	10	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	434905	434905	C	G	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.5009	p.A1670G	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	61	0	0	37	14	27.45	-	-	-	G	434905	C	G	434905	3	3	482	1	0	0	0	0	1	0	0	0	4728	768	27	3	5163	3	DOCK8	9	434905	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		434905	140778526	69	44248										
JAK2	0	genome.wustl.edu	37	chr9	5029900	5029900	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caggcataatgtactctacaGaataaggtactttcttcagt	7	8	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	5029900	5029900	G	T	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	missense	c.344	p.R115I	1.000	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	272	0	0	157	26	14.21	-	-	-	T	5029900	G	T	5029900	3	4	482	1	0	0	0	0	1	0	0	0	7992	942	33	2	350	2	JAK2	9	5029900	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4594995	5029900	136183531	70	44249										
ZNF658	0	genome.wustl.edu	37	chr9	40774338	40774338	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aatagttctctgagattgagTgaggggtgacttcctactga	12	6	1	5			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	40774338	40774338	T	A	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.937	p.T313S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	345	0	0	197	45	18.6	-	-	-	A	40774338	T	A	40774338	3	1	482	1	0	0	0	0	1	0	0	0	18165	1696	59	5	2246	5	ZNF658	9	40774338	Missense_Mutation	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09	35744438	40774338	100439093	71	44250										
ZNF510	0	genome.wustl.edu	37	chr9	99521783	99521783	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgagtactgaggtgtgacttCtgggagaaagtttttccaca	12	6	1	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	99521783	99521783	C	T	SNP	ZNF510	ENST00000223428	human	ensembl	69_37n	-1	known	silent	c.1329	p.Q443	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386	421	0	0	269	48	15.09	-	-	-	T	99521783	C	T	99521783	2	4	482	1	0	0	0	0	0	0	0	1	18050	912	32	2		2	ZNF510	9	99521783	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	58747445	99521783	41691648	72	44251										
STX17	0	genome.wustl.edu	37	chr9	102713416	102713416	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gatgacctagtacttctgaaGagaatgatagatcctgttaa	9	6	1	5			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	102713416	102713416	G	A	SNP	STX17	ENST00000259400	human	ensembl	69_37n	1	known	silent	c.264	p.K88	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874	116	0	0	131	20	13.25	-	-	-	A	102713416	G	A	102713416	2	1	482	1	0	0	0	0	0	0	0	1	15431	933	33	2		2	STX17	9	102713416	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	3191633	102713416	38500015	73	44252										
DAB2IP	0	genome.wustl.edu	37	chr9	124522313	124522313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcaagacggacaatgttttCtggggcgagcacttcgagtt	12	9	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	124522313	124522313	C	G	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.765	p.F255L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	75	0	0	27	4	12.9	-	-	-	G	124522313	C	G	124522313	3	3	482	1	0	0	0	0	1	0	0	0	4251	912	32	2	703	2	DAB2IP	9	124522313	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	21808897	124522313	16691118	74	44253										
STXBP1	0	genome.wustl.edu	37	chr9	130423461	130423461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctctgacggaaatcaatattGcatttctcccgtatgaatcc	6	11	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	9	130423461	130423461	G	A	SNP	STXBP1	ENST00000373299	human	ensembl	69_37n	1	known	missense	c.406	p.A136T	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	154	0	0	101	21	17.21	-	-	-	A	130423461	G	A	130423461	3	1	482	1	0	0	0	0	1	0	0	0	15443	1319	46	4	428	4	STXBP1	9	130423461	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	5901148	130423461	10789970	75	44254										
CELF2	0	genome.wustl.edu	37	chr10	11299809	11299809	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gatagaagaatgccggatccTccggggacctgatgggctga	15	9	0	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	11299809	11299809	T	C	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	missense	c.512	p.L171P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	67	0	0	55	11	16.67	-	-	-	C	11299809	T	C	11299809	3	2	482	1	0	0	0	0	1	0	0	0	3245	1551	54	5	587	5	CELF2	10	11299809	Missense_Mutation	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09		11299809	124234938	76	44255										
ERCC6	0	genome.wustl.edu	37	chr10	50667204	50667204	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aggaagcgaggggcccggatGaagagtctgcatcttctgct	15	9	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	50667204	50667204	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.4139	p.S1380L	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	265	0	0	209	29	12.18	-	-	-	A	50667204	G	A	50667204	3	1	482	1	0	0	0	0	1	0	0	0	5254	1294	45	2	346	2	ERCC6	10	50667204	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	39367395	50667204	84867543	77	44256										
C10orf12	0	genome.wustl.edu	37	chr10	98743922	98743922	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcactacaggctgagcgcttGaaaaagcacttgaagaaatt	9	8	1	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	98743922	98743922	G	C	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.2775	p.L925F	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	232	0	0	171	35	16.99	-	-	-	C	98743922	G	C	98743922	3	2	482	1	0	0	0	0	1	0	0	0	1599	1281	45	2	2777	2	C10orf12	10	98743922	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	48076718	98743922	36790825	78	44257										
UBTD1	0	genome.wustl.edu	37	chr10	99330208	99330208	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctcacagaccgcacacggctCcaggagaccaagatccagaa	9	15	1	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	99330208	99330208	C	T	SNP	UBTD1	ENST00000370664	human	ensembl	69_37n	1	known	silent	c.612	p.L204	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBTD1	HGNC	ENSG00000165886	48	0	0	23	6	20.69	-	-	-	T	99330208	C	T	99330208	2	4	482	1	0	0	0	0	0	0	0	1	17004	842	30	2		2	UBTD1	10	99330208	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	586286	99330208	36204539	79	44258										
EIF3A	0	genome.wustl.edu	37	chr10	120797885	120797885	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtcccattcacgttcttctGatggccttgattctcgaggt	9	11	4	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	120797885	120797885	G	A	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.3593	p.S1198L	0.015	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	189	0	0	215	41	16.02	-	-	-	A	120797885	G	A	120797885	3	1	482	1	0	0	0	0	1	0	0	0	5047	1294	45	2	567	2	EIF3A	10	120797885	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	21467677	120797885	14736862	80	44259										
FANK1	0	genome.wustl.edu	37	chr10	127697019	127697019	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aggatggaccccactcatgaGagtctctgcggtgtcgggaa	14	10	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	10	127697019	127697019	G	C	SNP	FANK1	ENST00000368693	human	ensembl	69_37n	1	known	missense	c.749	p.R250T	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	109	0	0	94	23	19.66	-	-	-	C	127697019	G	C	127697019	3	2	482	1	0	0	0	0	1	0	0	0	5718	942	33	2	779	2	FANK1	10	127697019	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	6899134	127697019	7837728	81	44260										
SBF2	0	genome.wustl.edu	37	chr11	10024173	10024173	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	taagtctctggaaacttgcaGaatggaagagaaccttattt	9	6	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	10024173	10024173	G	A	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.683	p.S228F	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	222	0	0	154	32	17.2	-	-	-	A	10024173	G	A	10024173	3	1	482	1	0	0	0	0	1	0	0	0	13946	942	33	2	5002	2	SBF2	11	10024173	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		10024173	124982343	82	44261										
SLC17A6	0	genome.wustl.edu	37	chr11	22397543	22397543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgaaggttttggcatggaagCcacactgctcctggtcgttg	13	9	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	22397543	22397543	C	T	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	missense	c.1190	p.A397V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	112	1	0.88	85	18	17.48	-	-	-	T	22397543	C	T	22397543	3	4	482	1	0	0	0	0	1	0	0	0	14510	739	26	4	1228	4	SLC17A6	11	22397543	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	12373370	22397543	112608973	83	44262										
QSER1	0	genome.wustl.edu	37	chr11	32976846	32976846	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	attctggttattacaggaggCtttaaaaacaggaaaagaac	9	5	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	32976846	32976846	C	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.4118	p.A1373D	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	53	0	0	41	9	18	-	-	-	A	32976846	C	A	32976846	3	1	482	1	0	0	0	0	1	0	0	0	12965	797	28	4	4132	4	QSER1	11	32976846	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	10579303	32976846	102029670	84	44263										
OR5M3	0	genome.wustl.edu	37	chr11	56237193	56237193	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctccacagactcctctgtggGacgtctgagatacatgaaga	10	11	2	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	56237193	56237193	G	C	SNP	OR5M3	ENST00000312240	human	ensembl	69_37n	-1	known	missense	c.781	p.P261A	0.422	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M3	HGNC	ENSG00000174937	152	0	0	113	20	15.04	-	-	-	C	56237193	G	C	56237193	3	2	482	1	0	0	0	0	1	0	0	0	11248	1174	41	2	144	2	OR5M3	11	56237193	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	23260347	56237193	78769323	85	44264										
OR10V1	0	genome.wustl.edu	37	chr11	59480614	59480614	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	caggtagagtaggcttgctgGcgcccttctgctgaccggat	14	11	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	59480614	59480614	G	A	SNP	OR10V1	ENST00000307552	human	ensembl	69_37n	-1	known	silent	c.705	p.R235	0.063	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10V1	HGNC	ENSG00000172289	157	0	0	122	31	20.26	-	-	-	A	59480614	G	A	59480614	2	1	482	1	0	0	0	0	0	0	0	1	10993	1190	42	4		4	OR10V1	11	59480614	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	3243421	59480614	75525902	86	44265										
KRTAP5-10	0	genome.wustl.edu	37	chr11	71276947	71276947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gggctccaaggggggctgtgGttcttgtgggggctccaagg	20	8	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	71276947	71276947	G	A	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	1	known	missense	c.314	p.G105D	0.904	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	93	0	0	106	23	17.56	-	-	-	A	71276947	G	A	71276947	3	1	482	1	0	0	0	0	1	0	0	0	8613	1261	44	4	316	4	KRTAP5-10	11	71276947	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	11796333	71276947	63729569	87	44266										
LAYN	0	genome.wustl.edu	37	chr11	111414805	111414805	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctgaagatgaacagaaactGatagaaaagttcattgaaaa	8	4	2	7			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	111414805	111414805	G	C	SNP	LAYN	ENST00000375615	human	ensembl	69_37n	1	known	silent	c.267	p.L89	0.992	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381	95	0	0	46	16	25.81	-	-	-	C	111414805	G	C	111414805	2	2	482	1	0	0	0	0	0	0	0	1	8703	1277	45	2		2	LAYN	11	111414805	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	40137858	111414805	23591711	88	44267										
NCAM1	0	genome.wustl.edu	37	chr11	113140962	113140962	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggggccatcgtgggcatcctCatcgtcatcttcgtcctgct	11	14	3	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	113140962	113140962	C	A	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	silent	c.2154	p.L718	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	85	0	0	60	20	25	-	-	-	A	113140962	C	A	113140962	2	1	482	1	0	0	0	0	0	0	0	1	10274	813	29	2		2	NCAM1	11	113140962	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	1726157	113140962	21865554	89	44268										
PHLDB1	0	genome.wustl.edu	37	chr11	118520793	118520793	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgctcccaggcacgacccctGacccgctacctgccaatccg	8	20	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	11	118520793	118520793	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	silent	c.3666	p.L1222	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	102	0	0	85	13	13.27	-	-	-	A	118520793	G	A	118520793	2	1	482	1	0	0	0	0	0	0	0	1	11925	1277	45	2		2	PHLDB1	11	118520793	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	5379831	118520793	16485723	90	44269										
KLRC3	0	genome.wustl.edu	37	chr12	10570980	10570980	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctatacaaagcagactagaaGagttctttgaagcacaggcc	9	9	1	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	12	10570980	10570980	G	C	SNP	KLRC3	ENST00000381903	human	ensembl	69_37n	-1	known	missense	c.449	p.S150C	0.006	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC3	HGNC	ENSG00000205810	265	0	0	205	71	25.63	-	-	-	C	10570980	G	C	10570980	3	2	482	1	0	0	0	0	1	0	0	0	8470	942	33	2	385	2	KLRC3	12	10570980	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		10570980	123280915	91	44270										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100452800	100452800	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gatcactagattcactttgtGatgtatttagagatacctga	8	6	2	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	12	100452800	100452800	G	A	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.2255	p.S752L	0.997	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	344	0	0	160	50	23.81	-	-	-	A	100452800	G	A	100452800	3	1	482	1	0	0	0	0	1	0	0	0	17066	1294	45	2	2171	2	UHRF1BP1L	12	100452800	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	89881820	100452800	33399095	92	44271										
CCDC53	0	genome.wustl.edu	37	chr12	102437882	102437882	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cgtttcttagaactcacttaCctgtggttgctctgaagtgg	10	9	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	12	102437882	102437882	C	A	SNP	CCDC53	ENST00000240079	human	ensembl	69_37n	-1	known	splice_site	c.324+1	e4+1	1.000	-	-	-	no_errors	CCDC53	HGNC	ENSG00000120860	29	0	0	22	6	21.43	-	-	-	A	102437882	C	A	102437882	5	1	482	1	0	0	0	0	0	0	1	0	2850	521	18	4	206	4	CCDC53	12	102437882	Splice_Site	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	1985082	102437882	31414013	93	44272										
CIT	0	genome.wustl.edu	37	chr12	120295450	120295450	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cctacaagacttctgacttcGaagtcctttgccgaaggctg	9	12	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	12	120295450	120295450	G	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	silent	c.291	p.F97	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Citron_Rho-interacting_kinase,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	387	0	0	289	68	19.05	-	-	-	A	120295450	G	A	120295450	2	1	482	1	0	0	0	0	0	0	0	1	3468	1049	37	1		1	CIT	12	120295450	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	17857568	120295450	13556445	94	44273										
GOLGA3	0	genome.wustl.edu	37	chr12	133367817	133367817	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tttaccttttgttggagaaaCtgttcctttattttttgcat	6	6	0	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	12	133367817	133367817	C	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.2532	p.Q844H	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	66	0	0	34	14	29.17	-	-	-	A	133367817	C	A	133367817	3	1	482	1	0	0	0	0	1	0	0	0	6606	564	20	4	2154	4	GOLGA3	12	133367817	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	13072367	133367817	484078	95	44274										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20233249	20233249	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gaattttgctgcaacagatgCaattccaagtagtgagtagt	10	6	0	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	13	20233249	20233249	C	A	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.1691	p.A564E	0.008	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	211	0	0	126	37	22.7	-	-	-	A	20233249	C	A	20233249	3	1	482	1	0	0	0	0	1	0	0	0	9799	710	25	4	1713	4	MPHOSPH8	13	20233249	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		20233249	94936629	96	44275										
LRCH1	0	genome.wustl.edu	37	chr13	47262104	47262104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggccacatttacaccagcacGtggaagatgggtgagtcatg	13	9	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	13	47262104	47262104	G	A	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.940	p.V314M	0.630	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	140	0	0	95	15	13.64	-	-	-	A	47262104	G	A	47262104	3	1	482	1	0	0	0	0	1	0	0	0	8998	1145	40	1	962	1	LRCH1	13	47262104	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	27028855	47262104	67907774	97	44276										
RCBTB1	0	genome.wustl.edu	37	chr13	50141327	50141327	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cgtacagtgcttcactggctGaggtgccgaagacacacgcc	12	13	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	13	50141327	50141327	G	A	SNP	RCBTB1	ENST00000258646	human	ensembl	69_37n	-1	known	missense	c.89	p.S30L	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_Reg_chr_condens,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	98	0	0	66	19	22.35	-	-	-	A	50141327	G	A	50141327	3	1	482	1	0	0	0	0	1	0	0	0	13254	1294	45	2	1550	2	RCBTB1	13	50141327	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	2879223	50141327	65028551	98	44277										
TRIM13	0	genome.wustl.edu	37	chr13	50587274	50587275	+	Frame_Shift_Del	DEL	TT	TT	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tactgaacaatgtggcagaaTttgtgtgcaaatataaacta							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	13	50587274	50587275	TT	-	DEL	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	frame_shift_del	c.1207_1208	p.F403fs	1.000:1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	169	0	0	83	21	20	-	-	-	-	50587275	TT	-	50587274	7	5	482	1	0	1	0	1	0	0	0	0	16584	1493	52	0	1213	0	TRIM13	13	50587274	Frame_Shift_Del	DEL	TT	TCGA-BH-A0AW-01A-11W-A071-09	445947	50587274	64582604	99	44278										
ABCC4	0	genome.wustl.edu	37	chr13	95715010	95715010	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cgtgaagtccaatttcagttGtcaagatcttatcaatccaa	6	9	4	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	13	95715010	95715010	G	T	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.3314	p.T1105K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	200	0	0	199	26	11.5	-	-	-	T	95715010	G	T	95715010	3	4	482	1	0	0	0	0	1	0	0	0	55	1377	48	4	687	4	ABCC4	13	95715010	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	45127736	95715010	19454868	100	44279										
CAPN3	0	genome.wustl.edu	37	chr15	42646653	42646653	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aactacccaacagaaaaatgTaagtataatctttcagagtg	6	7	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	15	42646653	42646653	T	A	SNP	CAPN3	ENST00000356316	human	ensembl	69_37n	1	known	splice_site	c.48+2	e1+2	0.000	-	-	-	no_errors	CAPN3	HGNC	ENSG00000092529	50	0	0	45	7	13.46	-	-	-	A	42646653	T	A	42646653	5	1	482	1	0	0	0	0	0	0	1	0	2653	1652	57	5	52	5	CAPN3	15	42646653	Splice_Site	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09		42646653	59884739	101	44280										
ATF7IP2	0	genome.wustl.edu	37	chr16	10524750	10524750	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcagagaaaagtaaagtattCtctcagaattgcataaaacc	6	7	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	16	10524750	10524750	C	T	SNP	ATF7IP2	ENST00000356427	human	ensembl	69_37n	1	known	silent	c.273	p.F91	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	ATF7IP2	HGNC	ENSG00000166669	163	0	0	153	21	12.07	-	-	-	T	10524750	C	T	10524750	2	4	482	1	0	0	0	0	0	0	0	1	1092	912	32	2		2	ATF7IP2	16	10524750	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		10524750	79830003	102	44281										
SMYD4	0	genome.wustl.edu	37	chr17	1703215	1703215	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtaacatgtgtctcagcatCgccactccccaaatagtcac	6	14	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	17	1703215	1703215	C	T	SNP	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	silent	c.1473	p.A491	0.983	pfam_SET_dom	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	119	0	0	54	12	18.18	-	-	-	T	1703215	C	T	1703215	2	4	482	1	0	0	0	0	0	0	0	1	14913	871	31	1		1	SMYD4	17	1703215	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		1703215	79491995	103	44282										
TP53	0	genome.wustl.edu	37	chr17	7577129	7577129	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aggcacaaacacgcacctcaAagctgttccgtcccagtaga	8	14	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	17	7577129	7577129	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.809	p.F270S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	110	0	0	41	40	48.78	-	-	-	G	7577129	A	G	7577129	3	3	482	1	0	0	0	0	1	0	0	0	16477	14	1	5	477	5	TP53	17	7577129	Missense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09	5873914	7577129	73618081	104	44283										
DNAH9	0	genome.wustl.edu	37	chr17	11672535	11672535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tcatgctggtgggcacggctGgcactggcaagtcggtgctg	17	10	1	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	17	11672535	11672535	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.7441	p.G2481S	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	38	0	0	23	13	36.11	-	-	-	A	11672535	G	A	11672535	3	1	482	1	0	0	0	0	1	0	0	0	4643	1348	47	4	7591	4	DNAH9	17	11672535	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	4095406	11672535	69522675	105	44284										
RAB11FIP4	0	genome.wustl.edu	37	chr17	29858682	29858682	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agatcaacttccggctgaggCagtacatggacaagattatc	10	9	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	17	29858682	29858682	C	T	SNP	RAB11FIP4	ENST00000325874	human	ensembl	69_37n	1	known	nonsense	c.1846	p.Q616*	1.000	pfam_Rab-bd_FIP-RBD	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242	48	0	0	18	5	21.74	-	-	-	T	29858682	C	T	29858682	4	4	482	1	0	0	0	0	0	1	0	0	12979	711	25	4	1904	4	RAB11FIP4	17	29858682	Nonsense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	18186147	29858682	51336528	106	44285										
LPO	0	genome.wustl.edu	37	chr17	56329630	56329630	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctgccccactccaccctacAagtccctggcccgagagcag	8	19	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	17	56329630	56329630	A	T	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	nonsense	c.868	p.K290*	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	88	0	0	105	12	10.17	-	-	-	T	56329630	A	T	56329630	4	4	482	1	0	0	0	0	0	1	0	0	8988	131	5	5	894	5	LPO	17	56329630	Nonsense_Mutation	SNP	A	TCGA-BH-A0AW-01A-11W-A071-09	26470948	56329630	24865580	107	44286										
RALBP1	0	genome.wustl.edu	37	chr18	9533749	9533749	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gaggagtactcctccgagagCgagagcgagagtgaggatga	17	7	0	5			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	18	9533749	9533749	C	T	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	silent	c.1626	p.S542	0.378	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	186	0	0	186	27	12.68	-	-	-	T	9533749	C	T	9533749	2	4	482	1	0	0	0	0	0	0	0	1	13095	767	27	1		1	RALBP1	18	9533749	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		9533749	68543499	108	44287										
RNF138	0	genome.wustl.edu	37	chr18	29691779	29691779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	agcacattgtcccctatgtcGtggaaatgtgactagaagag	11	8	0	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	18	29691779	29691779	G	A	SNP	RNF138	ENST00000261593	human	ensembl	69_37n	1	known	missense	c.173	p.R58H	1.000	pfam_Znf_MIZ,pfscan_Znf_RING	pfam_Znf_MIZ,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF138	HGNC	ENSG00000134758	74	0	0	46	14	23.33	-	-	-	A	29691779	G	A	29691779	3	1	482	1	0	0	0	0	1	0	0	0	13527	1145	40	1	179	1	RNF138	18	29691779	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	20158030	29691779	48385469	109	44288										
ZNF236	0	genome.wustl.edu	37	chr18	74625817	74625817	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtggacgcggctttgtttcCtctggggtcctcaagtccca	12	12	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	18	74625817	74625817	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	silent	c.3018	p.S1006	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	188	0	0	246	41	14.29	-	-	-	T	74625817	C	T	74625817	2	4	482	1	0	0	0	0	0	0	0	1	17885	668	24	4		4	ZNF236	18	74625817	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	44934038	74625817	3451431	110	44289										
MUC16	0	genome.wustl.edu	37	chr19	9067623	9067623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgagtaggctgggacagacGaataagattccttttcagaa	11	7	1	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	9067623	9067623	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.19823	p.S6608L	0.004	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	463	1	0.22	441	96	17.88	-	-	-	A	9067623	G	A	9067623	3	1	482	1	0	0	0	0	1	0	0	0	10045	1059	37	1	24028	1	MUC16	19	9067623	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		9067623	50061360	111	44290										
ZNF562	0	genome.wustl.edu	37	chr19	9764242	9764242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tccaatgtggattcccatgtGattatcaaggcttgcaaaat	8	8	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	9764242	9764242	G	C	SNP	ZNF562	ENST00000448622	human	ensembl	69_37n	-1	known	missense	c.664	p.H222D	0.064	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466	299	0	0	172	35	16.91	-	-	-	C	9764242	G	C	9764242	3	2	482	1	0	0	0	0	1	0	0	0	18089	1290	45	2	620	2	ZNF562	19	9764242	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	696619	9764242	49364741	112	44291										
ZNF440	0	genome.wustl.edu	37	chr19	11943231	11943231	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgcctcacaccttcgagtgCatggtaggactcacactgga	10	13	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	11943231	11943231	C	G	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	1	known	missense	c.1240	p.H414D	0.776	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	247	0	0	258	41	13.71	-	-	-	G	11943231	C	G	11943231	3	3	482	1	0	0	0	0	1	0	0	0	18009	710	25	4	1254	4	ZNF440	19	11943231	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	2178989	11943231	47185752	113	44292										
PRKACA	0	genome.wustl.edu	37	chr19	14213652	14213652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aaggagaactcgagtttgacGaggaacggaaagttgacagc	14	6	0	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	14213652	14213652	G	A	SNP	PRKACA	ENST00000587372	human	ensembl	69_37n	-1	novel	missense	c.176	p.S59L	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKACA	HGNC	ENSG00000072062	67	0	0	46	29	38.67	-	-	-	A	14213652	G	A	14213652	3	1	482	1	0	0	0	0	1	0	0	0	12578	1045	37	1	771	1	PRKACA	19	14213652	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	2270421	14213652	44915331	114	44293										
ZNF253	0	genome.wustl.edu	37	chr19	20002371	20002371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgagaagatatgaagaatgCagacatgacaatttacagtt	9	5	0	6			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	20002371	20002371	C	T	SNP	ZNF253	ENST00000589717	human	ensembl	69_37n	1	known	silent	c.315	p.C105	0.033	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771	170	0	0	172	23	11.79	-	-	-	T	20002371	C	T	20002371	2	4	482	1	0	0	0	0	0	0	0	1	17893	718	25	4		4	ZNF253	19	20002371	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	5788719	20002371	39126612	115	44294										
ZNF429	0	genome.wustl.edu	37	chr19	21719844	21719844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ccggtcctcaacccttactaGccataagagaatacatactg	6	13	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	21719844	21719844	G	A	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.989	p.S330N	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	207	0	0	226	61	21.25	-	-	-	A	21719844	G	A	21719844	3	1	482	1	0	0	0	0	1	0	0	0	17998	971	34	4	1003	4	ZNF429	19	21719844	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	1717473	21719844	37409139	116	44295										
CYP2S1	0	genome.wustl.edu	37	chr19	41703830	41703830	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tggagacattccaggggacaGaaggtcagcatggcggggtc	17	8	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	41703830	41703830	G	A	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	missense	c.490	p.E164K	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	157	0	0	113	16	12.4	-	-	-	A	41703830	G	A	41703830	3	1	482	1	0	0	0	0	1	0	0	0	4205	943	33	2	500	2	CYP2S1	19	41703830	Missense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	19983986	41703830	17425153	117	44296										
PLEKHA4	0	genome.wustl.edu	37	chr19	49364911	49364911	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aggcaatggccggagaggacGaaccagcggcgtttccagag	16	10	0	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	49364911	49364911	G	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	69_37n	-1	known	silent	c.231	p.F77	0.995	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559	59	0	0	77	9	10.47	-	-	-	A	49364911	G	A	49364911	2	1	482	1	0	0	0	0	0	0	0	1	12132	1049	37	1		1	PLEKHA4	19	49364911	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	7661081	49364911	9764072	118	44297										
ETFB	0	genome.wustl.edu	37	chr19	51848506	51848506	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cagcttggccaccaggtcctCagtggtctccaccttgacgc	10	16	2	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	51848506	51848506	C	T	SNP	ETFB	ENST00000354232	human	ensembl	69_37n	-1	known	missense	c.1000	p.E334K	0.988	NULL	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379	107	0	0	46	9	16.36	-	-	-	T	51848506	C	T	51848506	3	4	482	1	0	0	0	0	1	0	0	0	5307	835	29	2	44	2	ETFB	19	51848506	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	2483595	51848506	7280477	119	44298										
ZNF578	0	genome.wustl.edu	37	chr19	53014007	53014007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aaaaagatgaaagaaatggcCatgaagcatccatgccaaaa	8	7	0	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	53014007	53014007	C	A	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.373	p.H125N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	498	0	0	440	82	15.71	-	-	-	A	53014007	C	A	53014007	3	1	482	1	0	0	0	0	1	0	0	0	18106	594	21	4	383	4	ZNF578	19	53014007	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	1165501	53014007	6114976	120	44299										
ZNF776	0	genome.wustl.edu	37	chr19	58265573	58265573	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aatgtgggaaatcgtttaatCacaagtgcaacctcattcag	8	8	3	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	19	58265573	58265573	C	T	SNP	ZNF776	ENST00000317178	human	ensembl	69_37n	1	known	missense	c.1075	p.H359Y	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	380	0	0	318	43	11.88	-	-	-	T	58265573	C	T	58265573	3	4	482	1	0	0	0	0	1	0	0	0	18242	826	29	2	1085	2	ZNF776	19	58265573	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	5251566	58265573	863410	121	44300										
PLCB1	0	genome.wustl.edu	37	chr20	8769095	8769095	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	actgacattttctttttccaGcttattcaaaagttgacgga	6	8	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	20	8769095	8769095	G	C	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	splice_site	c.3112-1	e28-1	1.000	-	-	-	no_errors	PLCB1	HGNC	ENSG00000182621	77	0	0	64	16	20	-	-	-	C	8769095	G	C	8769095	5	2	482	1	0	0	0	0	0	0	1	0	12101	985	34	4	3221	4	PLCB1	20	8769095	Splice_Site	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		8769095	54256425	122	44301										
CSE1L	0	genome.wustl.edu	37	chr20	47691354	47691356	+	In_Frame_Del	DEL	GAG	GAG	-													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	aagcatttgaagataattctGaggagtacataaggagagat							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	20	47691354	47691356	GAG	-	DEL	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	in_frame_del	c.1099_1101	p.E368in_frame_del	1.000:1.000:1.000	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	72	0	0	52	13	20	-	-	-	-	47691356	GAG	-	47691354	7	5	482	1	0	1	0	1	0	0	0	0	3962	1291	45	0	1137	0	CSE1L	20	47691354	In_Frame_Del	DEL	GAG	TCGA-BH-A0AW-01A-11W-A071-09	38922259	47691354	15334166	123	44302										
SPATA2	0	genome.wustl.edu	37	chr20	48523073	48523073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cgtcaggtgctcccggccctCtgcccgccgccgcagggcgt	14	19	2	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	20	48523073	48523073	C	G	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	missense	c.646	p.E216Q	0.995	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	48	0	0	44	10	18.52	-	-	-	G	48523073	C	G	48523073	3	3	482	1	0	0	0	0	1	0	0	0	15096	922	32	2	920	2	SPATA2	20	48523073	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	831719	48523073	14502447	124	44303										
APP	0	genome.wustl.edu	37	chr21	27354686	27354686	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctctctcggtgcttggcctCaagcctctctttggctttct	8	14	5	0			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	21	27354686	27354686	C	G	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.1195	p.E399Q	1.000	superfamily_Amyloid_glyco_E2_domain,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	191	0	0	173	22	11.28	-	-	-	G	27354686	C	G	27354686	3	3	482	1	0	0	0	0	1	0	0	0	817	835	29	2	1157	2	APP	21	27354686	Missense_Mutation	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09		27354686	20775209	125	44304										
TIAM1	0	genome.wustl.edu	37	chr21	32492859	32492859	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tttccggcctctttcccgctGactgatggaggtggcctgaa	12	12	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	21	32492859	32492859	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	nonsense	c.4603	p.Q1535*	0.992	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	86	0	0	64	17	20.99	-	-	-	A	32492859	G	A	32492859	4	1	482	1	0	0	0	0	0	1	0	0	15985	1299	45	2	176	2	TIAM1	21	32492859	Nonsense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	5138173	32492859	15637036	126	44305										
DSCAM	0	genome.wustl.edu	37	chr21	41710062	41710062	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tggacgctctggctggtggaGagttgtggttgaaccaacac	15	8	1	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	21	41710062	41710062	G	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.1749	p.L583	0.998	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	145	0	0	81	12	12.9	-	-	-	C	41710062	G	C	41710062	2	2	482	1	0	0	0	0	0	0	0	1	4803	929	33	2		2	DSCAM	21	41710062	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	9217203	41710062	6419833	127	44306										
CECR5	0	genome.wustl.edu	37	chr22	17619469	17619469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tagagcttccggatgggggcGgcccagccccgcctctccgc	14	17	1	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	22	17619469	17619469	G	A	SNP	CECR5	ENST00000336737	human	ensembl	69_37n	-1	known	silent	c.906	p.A302	0.000	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998	228	0	0	195	26	11.71	-	-	-	A	17619469	G	A	17619469	2	1	482	1	0	0	0	0	0	0	0	1	3236	1103	39	1		1	CECR5	22	17619469	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09		17619469	33685097	128	44307										
PRAME	0	genome.wustl.edu	37	chr22	22892667	22892667	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ctgcttctggctctggaaatGagtacagactggccctgttt	11	10	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	22	22892667	22892667	G	C	SNP	PRAME	ENST00000398741	human	ensembl	69_37n	-1	known	nonsense	c.434	p.S145*	0.002	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	110	0	0	109	13	10.66	-	-	-	C	22892667	G	C	22892667	4	2	482	1	0	0	0	0	0	1	0	0	12501	1294	45	2	1103	2	PRAME	22	22892667	Nonsense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	5273198	22892667	28411899	129	44308										
GTPBP1	0	genome.wustl.edu	37	chr22	39111931	39111931	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gatgggactgagtatgggctGagtgaagctgacatggaggc	18	5	0	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	22	39111931	39111931	G	C	SNP	GTPBP1	ENST00000418601	human	ensembl	69_37n	1	known	nonstop	c.212	p.*71S	1.000	NULL	NULL	-	no_errors	GTPBP1	HGNC	ENSG00000100226	152	0	0	86	17	16.5	-	-	-	C	39111931	G	C	39111931	4	2	482	1	0	0	0	0	0	0	0	0	6929	1277	45	2	334	2	GTPBP1	22	39111931	Nonstop_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	16219264	39111931	12192635	130	44309										
RAI2	0	genome.wustl.edu	37	chrX	17818739	17818739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tctcttttgaaggagaagttTttggtggacacccctgagag	12	7	1	3			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	17818739	17818739	T	G	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.1392	p.K464N	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	558	1	0.18	315	63	16.67	-	-	-	G	17818739	T	G	17818739	3	3	482	1	0	0	0	0	1	0	0	0	13092	1838	64	5	204	5	RAI2	23	17818739	Missense_Mutation	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09		17818739	137451821	131	44310										
MAP3K15	0	genome.wustl.edu	37	chrX	19410533	19410534	+	Frame_Shift_Ins	INS	-	-	T													0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ggatctgtttggtgtaaaacINSttgattgtcggttccttcat							TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	19410533	19410534	-	T	INS	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2253_2252	p.F752fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	401	0	0	217	33	13.2	-	-	-	T	19410534	-	T	19410533	7	5	482	1	0	1	1	0	0	0	0	0	9320	564	20	0	1740	0	MAP3K15	23	19410533	Frame_Shift_Ins	INS	-	TCGA-BH-A0AW-01A-11W-A071-09	1591794	19410533	135860027	132	44311										
MAP7D2	0	genome.wustl.edu	37	chrX	20030640	20030640	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	ttaacttcctggcaggtgttCaatccattgatttctgatcg	8	9	2	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	20030640	20030640	C	T	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	silent	c.1899	p.L633	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	434	0	0	331	71	17.62	-	-	-	T	20030640	C	T	20030640	2	4	482	1	0	0	0	0	0	0	0	1	9339	825	29	2		2	MAP7D2	23	20030640	Silent	SNP	C	TCGA-BH-A0AW-01A-11W-A071-09	620107	20030640	135239920	133	44312										
PHF8	0	genome.wustl.edu	37	chrX	54069105	54069105	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	cacatgtcacactcgatcatGaagcgggtcacatcgtaagg	10	11	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	54069105	54069105	G	A	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	silent	c.165	p.F55	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	24	0	0	16	7	30.43	-	-	-	A	54069105	G	A	54069105	2	1	482	1	0	0	0	0	0	0	0	1	11914	1281	45	2		2	PHF8	23	54069105	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	34038465	54069105	101201455	134	44313										
ZCCHC13	0	genome.wustl.edu	37	chrX	73524431	73524431	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	tgtgatcgtcagaaagagcaGaaatgctactcttgcggcaa	11	8	2	4			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	73524431	73524431	G	A	SNP	ZCCHC13	ENST00000339534	human	ensembl	69_37n	1	known	silent	c.330	p.Q110	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969	106	0	0	107	31	22.46	-	-	-	A	73524431	G	A	73524431	2	1	482	1	0	0	0	0	0	0	0	1	17678	933	33	2		2	ZCCHC13	23	73524431	Silent	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	19455326	73524431	81746129	135	44314										
SERPINA7	0	genome.wustl.edu	37	chrX	105278294	105278294	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	attttcagaataggcatgctGaatgcccatcttcaaaagtg	8	8	3	2			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	105278294	105278294	G	A	SNP	SERPINA7	ENST00000327674	human	ensembl	69_37n	-1	known	nonsense	c.976	p.Q326*	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA7	HGNC	ENSG00000123561	187	0	0	140	25	15.15	-	-	-	A	105278294	G	A	105278294	4	1	482	1	0	0	0	0	0	1	0	0	14182	1299	45	2	279	2	SERPINA7	23	105278294	Nonsense_Mutation	SNP	G	TCGA-BH-A0AW-01A-11W-A071-09	31753863	105278294	49992266	136	44315										
PASD1	0	genome.wustl.edu	37	chrX	150780207	150780207	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.335766423357664	46	4.43471240662992e-10	2.73377611733776	3.4933647260274	2.37098752811286	0.156184193595412	0.667022451250275	29	gtggctgaaaacatctcttcTcttcttggacatttaccagt	7	10	3	1			TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82057159-dd32-49fd-9ee7-82b4668f39c3	959f61e0-33ba-4464-a04a-efd0372eedb5	X	150780207	150780207	T	A	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	silent	c.189	p.S63	0.001	smart_PAS,pfscan_PAS	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	252	0	0	324	65	16.71	-	-	-	A	150780207	T	A	150780207	2	1	482	1	0	0	0	0	0	0	0	1	11544	1538	54	5		5	PASD1	23	150780207	Silent	SNP	T	TCGA-BH-A0AW-01A-11W-A071-09	45501913	150780207	4490353	137	44316										
RPS6KA1	0	genome.wustl.edu	37	chr1	26885381	26885381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ccaccggcctgatggaagacGacggcaagcctcgtgccccg	13	16	0	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	26885381	26885381	G	A	SNP	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	missense	c.1195	p.D399N	0.986	pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	71	0	0	14	8	36.36	-	-	-	A	26885381	G	A	26885381	3	1	483	1	0	0	0	0	1	0	0	0	13736	1058	37	1	1361	1	RPS6KA1	1	26885381	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		26885381	222365240	1	44317										
WLS	0	genome.wustl.edu	37	chr1	68624838	68624838	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gaaggtgcatttgagtttccGtggtactctttcatgggcca	12	8	2	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	68624838	68624838	G	C	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.472	p.R158G	0.915	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	152	0	0	89	22	19.82	-	-	-	C	68624838	G	C	68624838	3	2	483	1	0	0	0	0	1	0	0	0	17473	1144	40	3	1319	3	WLS	1	68624838	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	41739457	68624838	180625783	2	44318										
C1orf52	0	genome.wustl.edu	37	chr1	85718266	85718266	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	caacttaatctgtccaaagaAacatttcaacaagtttagca	4	9	2	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	85718266	85718266	A	T	SNP	C1orf52	ENST00000294661	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf52	HGNC	ENSG00000162642	55	0	0	41	9	18	-	-	-	T	85718266	A	T	85718266	1	4	483	0	1	0	0	0	0	0	0	0	2064	29	1	5		5	C1orf52	1	85718266	RNA	SNP	A	TCGA-BH-A0AY-01A-21W-A019-09	17093428	85718266	163532355	3	44319										
PDE4DIP	0	genome.wustl.edu	37	chr1	144904729	144904729	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tctactagtccttctagcatCagcagcaactgagtaaagaa	7	10	3	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	144904729	144904729	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	silent	c.2583	p.L861	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	548	0	0	381	118	23.6	-	-	-	T	144904729	C	T	144904729	2	4	483	1	0	0	0	0	0	0	0	1	11716	813	29	2		2	PDE4DIP	1	144904729	Silent	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	59186463	144904729	104345892	4	44320										
POGK	0	genome.wustl.edu	37	chr1	166819226	166819226	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cagcgagggatgctgatcttGaatggcttccggggccatgc	15	10	1	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	166819226	166819226	G	A	SNP	POGK	ENST00000367875	human	ensembl	69_37n	1	known	silent	c.1410	p.L470	0.220	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157	80	0	0	35	41	53.95	-	-	-	A	166819226	G	A	166819226	2	1	483	1	0	0	0	0	0	0	0	1	12259	1281	45	2		2	POGK	1	166819226	Silent	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	21914497	166819226	82431395	5	44321										
HMCN1	0	genome.wustl.edu	37	chr1	185833711	185833711	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tgatgctcggtccaaagattAccggctcacccatgaggtgc	11	12	1	3			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	185833711	185833711	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.449	p.Y150S	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	176	0	0	170	23	11.86	-	-	-	C	185833711	A	C	185833711	3	2	483	1	0	0	0	0	1	0	0	0	7271	391	14	5	459	5	HMCN1	1	185833711	Missense_Mutation	SNP	A	TCGA-BH-A0AY-01A-21W-A019-09	19014485	185833711	63416910	6	44322										
OR2T2	0	genome.wustl.edu	37	chr1	248616883	248616883	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	agccttctacaccaacgtgcTgccccactcctaccacactc	4	20	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	1	248616883	248616883	T	A	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	missense	c.785	p.L262Q	0.339	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	71	0	0	38	13	25.49	-	-	-	A	248616883	T	A	248616883	3	1	483	1	0	0	0	0	1	0	0	0	11093	1580	55	5	787	5	OR2T2	1	248616883	Missense_Mutation	SNP	T	TCGA-BH-A0AY-01A-21W-A019-09	62783172	248616883	633738	7	44323										
DPYSL5	0	genome.wustl.edu	37	chr2	27167565	27167565	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gaccgcactccctacctgggGgatgtcgctgttgtcgtgca	13	13	0	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	2	27167565	27167565	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	silent	c.1482	p.G494	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	171	1	0.58	66	39	37.14	-	-	-	A	27167565	G	A	27167565	2	1	483	1	0	0	0	0	0	0	0	1	4785	1219	43	4		4	DPYSL5	2	27167565	Silent	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		27167565	216031808	8	44324										
C2orf71	0	genome.wustl.edu	37	chr2	29293783	29293783	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	atggaatgtgtgttcccagaCactttggctatgactgcttg	11	8	0	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	2	29293783	29293783	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.3345	p.V1115	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	34	0	0	15	8	34.78	-	-	-	T	29293783	C	T	29293783	2	4	483	1	0	0	0	0	0	0	0	1	2211	465	17	4		4	C2orf71	2	29293783	Silent	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	2126218	29293783	213905590	9	44325										
ZNF142	0	genome.wustl.edu	37	chr2	219507935	219507935	+	Frame_Shift_Del	DEL	C	C	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tgtagggcaggagaagcgagCccccttctgcttttgaacca							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	2	219507935	219507935	C	-	DEL	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	frame_shift_del	c.3304	p.A1102fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	60	0	0	35	23	35.38	-	-	-	-	219507935	C	-	219507935	7	5	483	1	0	1	0	1	0	0	0	0	17827	739	26	0	1771	0	ZNF142	2	219507935	Frame_Shift_Del	DEL	C	TCGA-BH-A0AY-01A-21W-A019-09	190214152	219507935	23691438	10	44326										
SPP2	0	genome.wustl.edu	37	chr2	234959496	234959496	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	attatgtttgctcttggaatGaactactggtcttgctcagg	10	7	3	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	2	234959496	234959496	G	T	SNP	SPP2	ENST00000168148	human	ensembl	69_37n	1	known	missense	c.66	p.M22I	0.000	NULL	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080	384	1	0.26	128	65	33.68	-	-	-	T	234959496	G	T	234959496	3	4	483	1	0	0	0	0	1	0	0	0	15178	1290	45	2	68	2	SPP2	2	234959496	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	15451561	234959496	8239877	11	44327										
ABHD6	0	genome.wustl.edu	37	chr3	58253048	58253048	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cacggattctctgcccacaaGgatatgtggctcagtgtggt	12	10	2	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	3	58253048	58253048	G	C	SNP	ABHD6	ENST00000295962	human	ensembl	69_37n	1	known	missense	c.252	p.K84N	1.000	prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686	273	0	0	141	23	14.02	-	-	-	C	58253048	G	C	58253048	3	2	483	1	0	0	0	0	1	0	0	0	86	991	35	4	258	4	ABHD6	3	58253048	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		58253048	139769382	12	44328										
POLQ	0	genome.wustl.edu	37	chr3	121207015	121207015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cacttagttctaatgctctaGgagatactacagtatgattc	7	8	2	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	3	121207015	121207015	G	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.4763	p.P1588L	0.001	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	324	0	0	276	51	15.6	-	-	-	A	121207015	G	A	121207015	3	1	483	1	0	0	0	0	1	0	0	0	12282	1000	35	4	3069	4	POLQ	3	121207015	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	62953967	121207015	76815415	13	44329										
PDZD2	0	genome.wustl.edu	37	chr5	32088295	32088295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gggacggctggtcccctcctCgttcccgtgtgtctttgcac	12	15	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	5	32088295	32088295	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.4741	p.R1581C	0.808	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	135	1	0.74	95	16	14.41	-	-	-	T	32088295	C	T	32088295	3	4	483	1	0	0	0	0	1	0	0	0	11774	884	31	1	4815	1	PDZD2	5	32088295	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09		32088295	148826965	14	44330										
PCDHA8	0	genome.wustl.edu	37	chr5	140222893	140222893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	aacctgcgctgaccgccacgGccacggttctggtgtcgctg	13	15	1	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	5	140222893	140222893	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.1987	p.A663T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	111	0	0	21	10	32.26	-	-	-	A	140222893	G	A	140222893	3	1	483	1	0	0	0	0	1	0	0	0	11603	1203	42	4	1989	4	PCDHA8	5	140222893	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	108134598	140222893	40692367	15	44331										
CD74	0	genome.wustl.edu	37	chr5	149784647	149784647	+	Splice_Site	DEL	C	C	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	catgcagggaaacctgctgaCcttccagtctatggtctcca							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	5	149784647	149784647	C	-	DEL	CD74	ENST00000009530	human	ensembl	69_37n	-1	known	splice_site_del	c.537+1	e5+1	1.000	-	-	-	no_errors	CD74	HGNC	ENSG00000019582	120	0	0	57	49	44.55	-	-	-	-	149784647	C	-	149784647	8	5	483	1	0	1	0	1	0	0	1	0	3064	521	18	0	372	0	CD74	5	149784647	Splice_Site	DEL	C	TCGA-BH-A0AY-01A-21W-A019-09	9561754	149784647	31130613	16	44332										
GRIA1	0	genome.wustl.edu	37	chr5	153149914	153149914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	aaccctgtgacaccatgaagGtgggaggtaacttggattcc	12	9	0	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	5	153149914	153149914	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.2239	p.V747M	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	312	0	0	145	28	16.18	-	-	-	A	153149914	G	A	153149914	3	1	483	1	0	0	0	0	1	0	0	0	6818	1261	44	4	2259	4	GRIA1	5	153149914	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	3365267	153149914	27765346	17	44333										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32489822	32489822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gccccagctccgtcaccgccCggtactcccccacgtcgctg	9	22	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	6	32489822	32489822	C	T	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	missense	c.230	p.R77Q	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	20	0	0	17	8	32	-	-	-	T	32489822	C	T	32489822	3	4	483	1	0	0	0	0	1	0	0	0	7260	652	23	1	590	1	HLA-DRB5	6	32489822	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09		32489822	138625245	18	44334										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32557461	32557461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ccagtggggagctcagcaccAtcagtgtcactgtcagcgct	12	13	4	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	6	32557461	32557461	A	G	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.59	p.M20T	0.430	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	221	2	0.9	163	24	12.83	-	-	-	G	32557461	A	G	32557461	3	3	483	1	0	0	0	0	1	0	0	0	7259	217	8	5	765	5	HLA-DRB1	6	32557461	Missense_Mutation	SNP	A	TCGA-BH-A0AY-01A-21W-A019-09	67639	32557461	138557606	19	44335										
IPCEF1	0	genome.wustl.edu	37	chr6	154481152	154481152	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tcatccagcaactggttaatCatggccagatcatgttcttt	7	10	4	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	6	154481152	154481152	C	G	SNP	IPCEF1	ENST00000367220	human	ensembl	69_37n	-1	known	missense	c.1128	p.M376I	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706	235	0	0	141	25	15.06	-	-	-	G	154481152	C	G	154481152	3	3	483	1	0	0	0	0	1	0	0	0	7845	826	29	2	192	2	IPCEF1	6	154481152	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	121923691	154481152	16633915	20	44336										
BAZ1B	0	genome.wustl.edu	37	chr7	72925144	72925144	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cagtactcttgcacgtccaaAtgcgctcactgtacctttcc	6	15	2	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	7	72925144	72925144	A	T	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.146	p.I49N	1.000	pfam_WSTF_Acf1_Cbp146,pfscan_WSTF_Acf1_Cbp146	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	339	0	0	207	46	18.18	-	-	-	T	72925144	A	T	72925144	3	4	483	1	0	0	0	0	1	0	0	0	1334	101	4	5	4377	5	BAZ1B	7	72925144	Missense_Mutation	SNP	A	TCGA-BH-A0AY-01A-21W-A019-09		72925144	86213519	21	44337										
FGL2	0	genome.wustl.edu	37	chr7	76825930	76825930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tatagttaccaacgtgtaaaCgatatttgagaaactcatta	6	6	1	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	7	76825930	76825930	C	T	SNP	FGL2	ENST00000248598	human	ensembl	69_37n	-1	known	missense	c.986	p.R329H	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGL2	HGNC	ENSG00000127951	194	0	0	263	79	23.1	-	-	-	T	76825930	C	T	76825930	3	4	483	1	0	0	0	0	1	0	0	0	5919	536	19	1	337	1	FGL2	7	76825930	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	3900786	76825930	82312733	22	44338										
PILRB	0	genome.wustl.edu	37	chr7	99956647	99956647	+	Frame_Shift_Del	DEL	A	A	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gtcgagctggacacccggagAtcagggaggcagcagttgca							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	7	99956647	99956647	A	-	DEL	PILRB	ENST00000448382	human	ensembl	69_37n	1	known	frame_shift_del	c.556	p.I186fs	0.000	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716	134	0	0	59	31	34.44	-	-	-	-	99956647	A	-	99956647	7	5	483	1	0	1	0	1	0	0	0	0	12000	333	12	0	405	0	PILRB	7	99956647	Frame_Shift_Del	DEL	A	TCGA-BH-A0AY-01A-21W-A019-09	23130717	99956647	59182016	23	44339										
TRIM24	0	genome.wustl.edu	37	chr7	138189074	138189074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	agtttgcagccaagaatgtgCagagagacacatcatagata	10	7	1	4			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	7	138189074	138189074	C	G	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	missense	c.404	p.A135G	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	250	0	0	257	79	23.51	-	-	-	G	138189074	C	G	138189074	3	3	483	1	0	0	0	0	1	0	0	0	16594	710	25	4	410	4	TRIM24	7	138189074	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	38232427	138189074	20949589	24	44340										
WDYHV1	0	genome.wustl.edu	37	chr8	124448694	124448694	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cagcaacttttacttttaggAttaccatgttgttttgcttc	6	8	0	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	8	124448694	124448694	A	T	SNP	WDYHV1	ENST00000287387	human	ensembl	69_37n	1	known	missense	c.236	p.D79V	1.000	pfam_Prot_N_Gln_amidohydro_ab_roll	pfam_Prot_N_Gln_amidohydro_ab_roll	-	no_errors	WDYHV1	HGNC	ENSG00000156795	153	0	0	131	15	10.27	-	-	-	T	124448694	A	T	124448694	3	4	483	1	0	0	0	0	1	0	0	0	17440	347	12	5	250	5	WDYHV1	8	124448694	Missense_Mutation	SNP	A	TCGA-BH-A0AY-01A-21W-A019-09		124448694	21915328	25	44341										
PTPRD	0	genome.wustl.edu	37	chr9	8341726	8341726	+	Silent	SNP	T	T	G													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tccattcctgtgacattctcTcccgtttctatttgtgtcag							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	9	8341726	8341726	T	G	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	silent	c.4914	p.G1638	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	593	0	0	316	77	19.54	-	-	-	G	8341726	T	G	8341726	2	3	483	1	0	0	0	0	0	0	0	1	12882	1538	54	5		5	PTPRD	9	8341726	Silent	SNP	T	TCGA-BH-A0AY-01A-21W-A019-09		8341726	132871705	26	44342	357	2								
PTPRD	0	genome.wustl.edu	37	chr9	8341727	8341727	+	Missense_Mutation	SNP	C	C	G													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ccattcctgtgacattctctCccgtttctatttgtgtcagc							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	9	8341727	8341727	C	G	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.4913	p.G1638A	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	591	1	0.17	315	78	19.85	-	-	-	G	8341727	C	G	8341727	3	3	483	1	0	0	0	0	1	0	0	0	12882	855	30	2	853	2	PTPRD	9	8341727	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	1	8341727	132871704	27	44343	357	2								
DHTKD1	0	genome.wustl.edu	37	chr10	12129635	12129635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ttccacgagctgctgaaaatGtcggcctacagcgggatcac	11	12	1	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	10	12129635	12129635	G	A	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	missense	c.624	p.M208I	0.186	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	188	0	0	141	32	18.5	-	-	-	A	12129635	G	A	12129635	3	1	483	1	0	0	0	0	1	0	0	0	4536	1377	48	4	638	4	DHTKD1	10	12129635	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		12129635	123405112	28	44344										
COL13A1	0	genome.wustl.edu	37	chr10	71562273	71562273	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cggtggctctggtggcggcgCgggcggagcgcggcgcacgg	23	12	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	10	71562273	71562273	C	A	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	silent	c.94	p.R32	0.274	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	9	0	0	5	5	50	-	-	-	A	71562273	C	A	71562273	2	1	483	1	0	0	0	0	0	0	0	1	3700	759	27	3		3	COL13A1	10	71562273	Silent	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	59432638	71562273	63972474	29	44345										
PPP3CB	0	genome.wustl.edu	37	chr10	75204476	75204476	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gcacagcaagttgcataacaTcattaccactttgcagggtc	8	11	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	10	75204476	75204476	T	A	SNP	PPP3CB	ENST00000394822	human	ensembl	69_37n	-1	known	missense	c.1427	p.D476V	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758	71	0	0	34	17	33.33	-	-	-	A	75204476	T	A	75204476	3	1	483	1	0	0	0	0	1	0	0	0	12475	1450	50	5		5	PPP3CB	10	75204476	Missense_Mutation	SNP	T	TCGA-BH-A0AY-01A-21W-A019-09	3642203	75204476	60330271	30	44346										
BSX	0	genome.wustl.edu	37	chr11	122850010	122850010	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ggccgtggccagctccactcGttctggcgtggacaggtagc	15	13	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	11	122850010	122850010	G	A	SNP	BSX	ENST00000343035	human	ensembl	69_37n	-1	known	nonsense	c.418	p.R140*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	BSX	HGNC	ENSG00000188909	219	1	0.45	39	14	26.42	-	-	-	A	122850010	G	A	122850010	4	1	483	1	0	0	0	0	0	1	0	0	1543	1153	40	1	290	1	BSX	11	122850010	Nonsense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		122850010	12156506	31	44347										
PTHLH	0	genome.wustl.edu	37	chr12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gtgttcttctgttgttttccTttttttttttcaaaccccac							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	35	0	0	32	4	10.81	-	-	-	-	28114898	T	-	28114898	7	5	483	1	0	1	0	1	0	0	0	0	12842	1624	56	0		0	PTHLH	12	28114898	Frame_Shift_Del	DEL	T	TCGA-BH-A0AY-01A-21W-A019-09		28114898	105736997	32	44348										
KRT6C	0	genome.wustl.edu	37	chr12	52867105	52867105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gtcaggagactctggttgacGgtgacctcttggatgcctcc	13	11	3	3			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	12	52867105	52867105	G	A	SNP	KRT6C	ENST00000252250	human	ensembl	69_37n	-1	known	silent	c.417	p.T139	0.045	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465	62	0	0	26	3	10.34	-	-	-	A	52867105	G	A	52867105	2	1	483	1	0	0	0	0	0	0	0	1	8535	1103	39	1		1	KRT6C	12	52867105	Silent	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	24752207	52867105	80984790	33	44349										
KRT78	0	genome.wustl.edu	37	chr12	53242469	53242470	+	Frame_Shift_Ins	INS	-	-	C													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tgatggtcacttcttggatgINSccccccggagggcacaggga							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	12	53242469	53242470	-	C	INS	KRT78	ENST00000304620	human	ensembl	69_37n	-1	known	frame_shift_ins	c.246_245	p.I83fs	1.000:1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423	65	0	0	31	4	11.43	-	-	-	C	53242470	-	C	53242469	7	5	483	1	0	1	1	0	0	0	0	0	8544	1306	46	0	1352	0	KRT78	12	53242469	Frame_Shift_Ins	INS	-	TCGA-BH-A0AY-01A-21W-A019-09	375364	53242469	80609426	34	44350										
LRP1	0	genome.wustl.edu	37	chr12	57560722	57560723	+	Frame_Shift_Ins	INS	-	-	C													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tgccccccagcccgcacctgINScccccccaaccagttctcct							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-11A-23W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	b19708f5-7d3a-499f-90fd-3918aaff30c0	12	57560722	57560723	-	C	INS	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_ins	c.2807_2808	p.N939fs	1.000:1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	47	0	0	25	3	10.71	-	-	-	C	57560723	-	C	57560722	7	5	483	1	0	1	1	0	0	0	0	0	9017	1319	46	0	2877	0	LRP1	12	57560722	Frame_Shift_Ins	INS	-	TCGA-BH-A0AY-01A-21W-A019-09	4318253	57560722	76291173	35	44351										
SSH1	0	genome.wustl.edu	37	chr12	109182866	109182867	+	Frame_Shift_Del	DEL	AG	AG	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gggaggacgtgatgtggggtAggaaggctggctgggtgcag							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	12	109182866	109182867	AG	-	DEL	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	frame_shift_del	c.2048_2047	p.L683fs	1.000:1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	48	0	0	11	12	48	-	-	-	-	109182867	AG	-	109182866	7	5	483	1	0	1	0	1	0	0	0	0	15275	420	15	0	1105	0	SSH1	12	109182866	Frame_Shift_Del	DEL	AG	TCGA-BH-A0AY-01A-21W-A019-09	51622144	109182866	24669029	36	44352										
PIWIL1	0	genome.wustl.edu	37	chr12	130833872	130833872	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	acgttagccataaagtccttCgaagtgagactgttttggat	10	7	0	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	12	130833872	130833872	C	T	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	nonsense	c.823	p.R275*	0.975	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	96	0	0	60	9	13.04	-	-	-	T	130833872	C	T	130833872	4	4	483	1	0	0	0	0	0	1	0	0	12031	876	31	1	849	1	PIWIL1	12	130833872	Nonsense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	21651006	130833872	3018023	37	44353										
LRRC16B	0	genome.wustl.edu	37	chr14	24534217	24534218	+	Frame_Shift_Ins	INS	-	-	C													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ggactctcggaggcaccgctINSgcctccactccagaagaaga							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	14	24534217	24534218	-	C	INS	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	frame_shift_ins	c.3131_3132	p.P1045fs	1.000:1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	62	0	0	25	15	37.5	-	-	-	C	24534218	-	C	24534217	7	5	483	1	0	1	1	0	0	0	0	0	9038	1580	55	0	3261	0	LRRC16B	14	24534217	Frame_Shift_Ins	INS	-	TCGA-BH-A0AY-01A-21W-A019-09		24534217	82815323	38	44354										
C14orf43	0	genome.wustl.edu	37	chr14	74188061	74188061	+	Frame_Shift_Del	DEL	C	C	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ctgcccgcctgctgcgctctCgcccctcttcctgctcctcc							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	14	74188061	74188061	C	-	DEL	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	frame_shift_del	c.2876	p.R959fs	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	C14orf43	HGNC	ENSG00000156030	69	0	0	23	23	50	-	-	-	-	74188061	C	-	74188061	7	5	483	1	0	1	0	1	0	0	0	0	1786	884	31	0	269	0	C14orf43	14	74188061	Frame_Shift_Del	DEL	C	TCGA-BH-A0AY-01A-21W-A019-09	49653844	74188061	33161479	39	44355										
MEIS2	0	genome.wustl.edu	37	chr15	37184562	37184562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tccatgtcttaattgagtagGgtgtggggtcatctggggag	16	5	3	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	15	37184562	37184562	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.1246	p.P416S	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	415	0	0	264	55	17.24	-	-	-	A	37184562	G	A	37184562	3	1	483	1	0	0	0	0	1	0	0	0	9539	1232	43	4	191	4	MEIS2	15	37184562	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09		37184562	65346830	40	44356										
VPS18	0	genome.wustl.edu	37	chr15	41192326	41192326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cgatttctgctttcgccagcGtcgctacctggagagcgcac	11	14	1	1			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	15	41192326	41192326	G	A	SNP	VPS18	ENST00000220509	human	ensembl	69_37n	1	known	missense	c.1310	p.R437H	0.968	superfamily_ARM-type_fold	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	83	0	0	26	13	33.33	-	-	-	A	41192326	G	A	41192326	3	1	483	1	0	0	0	0	1	0	0	0	17291	1145	40	1	1324	1	VPS18	15	41192326	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	4007764	41192326	61339066	41	44357										
CAPN3	0	genome.wustl.edu	37	chr15	42652165	42652165	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	agccgcaattttcctattatCggagtgaaagagaagacatt	9	7	0	3			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	15	42652165	42652165	C	T	SNP	CAPN3	ENST00000397163	human	ensembl	69_37n	1	known	silent	c.162	p.I54	0.016	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN3	HGNC	ENSG00000092529	203	0	0	306	66	17.6	-	-	-	T	42652165	C	T	42652165	2	4	483	1	0	0	0	0	0	0	0	1	2653	874	31	1		1	CAPN3	15	42652165	Silent	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	1459839	42652165	59879227	42	44358										
IQCH	0	genome.wustl.edu	37	chr15	67652219	67652219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gtcaagaggacatcatgataGgaaggtctgtaatttgtgtg	13	4	3	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	15	67652219	67652219	G	A	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	1	known	missense	c.749	p.R250K	0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	223	0	0	153	25	14.04	-	-	-	A	67652219	G	A	67652219	3	1	483	1	0	0	0	0	1	0	0	0	7865	1000	35	4	907	4	IQCH	15	67652219	Missense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	25000054	67652219	34879173	43	44359										
IFT140	0	genome.wustl.edu	37	chr16	1616239	1616240	+	Frame_Shift_Del	DEL	TG	TG	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ttgaagtcaaagacggtcacTgtgtccatttcaacatcgta							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	16	1616239	1616240	TG	-	DEL	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	frame_shift_del	c.1824_1823	p.T608fs	0.006:0.882	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	359	0	0	295	39	11.64	-	-	-	-	1616240	TG	-	1616239	7	5	483	1	0	1	0	1	0	0	0	0	7610	1567	55	0	2628	0	IFT140	16	1616239	Frame_Shift_Del	DEL	TG	TCGA-BH-A0AY-01A-21W-A019-09		1616239	88738514	44	44360										
EEF2K	0	genome.wustl.edu	37	chr16	22291592	22291592	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	cggactgtgatgagggcggtGagtacgacggaatgcaggac	18	7	0	3			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	16	22291592	22291592	G	T	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	nonsense	c.1963	p.E655*	1.000	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	90	0	0	37	18	32.73	-	-	-	T	22291592	G	T	22291592	4	4	483	1	0	0	0	0	0	1	0	0	4965	1291	45	2	2025	2	EEF2K	16	22291592	Nonsense_Mutation	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	20675353	22291592	68063161	45	44361										
TRADD	0	genome.wustl.edu	37	chr16	67190457	67190458	+	Frame_Shift_Ins	INS	-	-	G													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	gtacactgccaccttctgctINSgggggtgcgcgtaggcatcc							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	16	67190457	67190458	-	G	INS	TRADD	ENST00000345057	human	ensembl	69_37n	-1	known	frame_shift_ins	c.107_106	p.Q36fs	0.953:0.685	superfamily_TRADD_N	pfam_TRADD_N,pfam_Death,superfamily_TRADD_N,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	TRADD	HGNC	ENSG00000102871	168	0	0	15	2	11.76	-	-	-	G	67190458	-	G	67190457	7	5	483	1	0	1	1	0	0	0	0	0	16532	1580	55	0	847	0	TRADD	16	67190457	Frame_Shift_Ins	INS	-	TCGA-BH-A0AY-01A-21W-A019-09	44898865	67190457	23164296	46	44362										
FUK	0	genome.wustl.edu	37	chr16	70504321	70504322	+	Frame_Shift_Ins	INS	-	-	TG													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ggcccagattgtgcactcccINSaggtggaggtgagacctccc							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	16	70504321	70504322	-	TG	INS	FUK	ENST00000378912	human	ensembl	69_37n	1	known	frame_shift_ins	c.1156_1157	p.Q386fs	0.999:1.000	pfam_Fucokinase,superfamily_Trimer_LpxA-like	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	45	0	0	39	173	81.6	-	-	-	TG	70504322	-	TG	70504321	7	5	483	1	0	1	1	0	0	0	0	0	6145	595	21	0	1098	0	FUK	16	70504321	Frame_Shift_Ins	INS	-	TCGA-BH-A0AY-01A-21W-A019-09	3313864	70504321	19850432	47	44363										
ZNF296	0	genome.wustl.edu	37	chr19	45575384	45575384	+	Frame_Shift_Del	DEL	T	T	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	acagccggctccggaggggcTgcagaggcctgctcctggct							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-11A-23W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	b19708f5-7d3a-499f-90fd-3918aaff30c0	19	45575384	45575384	T	-	DEL	ZNF296	ENST00000303809	human	ensembl	69_37n	-1	known	frame_shift_del	c.903	p.A302fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF296	HGNC	ENSG00000170684	14	0	0	4	3	42.86	-	-	-	-	45575384	T	-	45575384	7	5	483	1	0	1	0	1	0	0	0	0	17924	1567	55	0	528	0	ZNF296	19	45575384	Frame_Shift_Del	DEL	T	TCGA-BH-A0AY-01A-21W-A019-09		45575384	13553599	48	44364	358	2								
ZNF296	0	genome.wustl.edu	37	chr19	45575390	45575391	+	Frame_Shift_Del	DEL	GG	GG	-													0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ggctccggaggggctgcagaGgcctgctcctggctggtgtc							TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-11A-23W-A100-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	b19708f5-7d3a-499f-90fd-3918aaff30c0	19	45575390	45575391	GG	-	DEL	ZNF296	ENST00000303809	human	ensembl	69_37n	-1	known	frame_shift_del	c.897_896	p.A299fs	0.350:0.773	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF296	HGNC	ENSG00000170684	10	0	0	4	3	42.86	-	-	-	-	45575391	GG	-	45575390	7	5	483	1	0	1	0	1	0	0	0	0	17924	987	35	0	534	0	ZNF296	19	45575390	Frame_Shift_Del	DEL	GG	TCGA-BH-A0AY-01A-21W-A019-09	6	45575390	13553593	49	44365	358	2								
GPR32	0	genome.wustl.edu	37	chr19	51273962	51273962	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	atgaactcttccggatgcctGtctgaggaggtggggtccct	14	10	2	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	19	51273962	51273962	G	T	SNP	GPR32	ENST00000270590	human	ensembl	69_37n	1	known	silent	c.105	p.L35	0.004	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511	163	0	0	88	12	12	-	-	-	T	51273962	G	T	51273962	2	4	483	1	0	0	0	0	0	0	0	1	6738	1364	48	4		4	GPR32	19	51273962	Silent	SNP	G	TCGA-BH-A0AY-01A-21W-A019-09	5698572	51273962	7855021	50	44366										
MCAT	0	genome.wustl.edu	37	chr22	43533197	43533197	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ttcccgggcttccaaacaggCgaagttgaacttggactgag	12	10	0	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	22	43533197	43533197	C	A	SNP	MCAT	ENST00000290429	human	ensembl	69_37n	-1	known	missense	c.619	p.A207S	1.000	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	-	no_errors	MCAT	HGNC	ENSG00000100294	193	0	0	39	30	43.48	-	-	-	A	43533197	C	A	43533197	3	1	483	1	0	0	0	0	1	0	0	0	9443	768	27	3	561	3	MCAT	22	43533197	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09		43533197	7771369	51	44367										
EDA2R	0	genome.wustl.edu	37	chrX	65819449	65819449	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ctggaaaacttttgcaggtcCagctctgtgcattcgatggg	12	9	1	0			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	X	65819449	65819449	C	T	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	silent	c.834	p.L278	1.000	prints_TNFR_27	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	60	0	0	19	8	29.63	-	-	-	T	65819449	C	T	65819449	2	4	483	1	0	0	0	0	0	0	0	1	4939	581	21	4		4	EDA2R	23	65819449	Silent	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09		65819449	89451111	52	44368										
OGT	0	genome.wustl.edu	37	chrX	70767782	70767782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	ttatttgaaagcaattgagaCgcaaccgaactttgcagtag	9	7	0	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	X	70767782	70767782	C	T	SNP	OGT	ENST00000373719	human	ensembl	69_37n	1	known	missense	c.557	p.T186M	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	327	0	0	194	120	38.22	-	-	-	T	70767782	C	T	70767782	3	4	483	1	0	0	0	0	1	0	0	0	10920	536	19	1	575	1	OGT	23	70767782	Missense_Mutation	SNP	C	TCGA-BH-A0AY-01A-21W-A019-09	4948333	70767782	84502778	53	44369										
DIAPH2	0	genome.wustl.edu	37	chrX	95993637	95993637	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0576923076923077	3	0.904872247913239	0.9684	2.0175	0.768571428571429	1	1	0	tgtcaaaaaagaaaaacctcTtattcaacatcctattgatt	3	8	3	2			TCGA-BH-A0AY-01A-21W-A019-09	TCGA-BH-A0AY-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac	635d1b45-ef87-457e-9ea9-bd97f6ee70c0	X	95993637	95993637	T	G	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.218	p.L73R	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	130	0	0	203	88	30.24	-	-	-	G	95993637	T	G	95993637	3	3	483	1	0	0	0	0	1	0	0	0	4555	1609	56	5	228	5	DIAPH2	23	95993637	Missense_Mutation	SNP	T	TCGA-BH-A0AY-01A-21W-A019-09	25225855	95993637	59276923	54	44370										
PTPRU	0	genome.wustl.edu	37	chr1	29652166	29652166	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gtacttggaggggctggagtCaagatagcggggccctggcc	18	9	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	29652166	29652166	C	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	nonsense	c.4334	p.S1445*	0.974	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	148	0	0	92	38	29.23	-	-	-	A	29652166	C	A	29652166	4	1	484	1	0	0	0	0	0	1	0	0	12896	838	29	2	4478	2	PTPRU	1	29652166	Nonsense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09		29652166	219598455	1	44371										
RPAP2	0	genome.wustl.edu	37	chr1	92789908	92789908	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tatgttttgggtgaagaaacCaccaaatcacaagactcaga	8	8	2	4			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	92789908	92789908	C	T	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	1	known	silent	c.1431	p.T477	0.034	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	57	0	0	24	21	46.67	-	-	-	T	92789908	C	T	92789908	2	4	484	1	0	0	0	0	0	0	0	1	13628	581	21	4		4	RPAP2	1	92789908	Silent	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	63137742	92789908	156460713	2	44372										
PDE4DIP	0	genome.wustl.edu	37	chr1	144882723	144882723	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggagctttctgaactcagccTgaaggctactctcactcaga	9	12	4	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	144882723	144882723	T	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.3296	p.Q1099P	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	713	0	0	580	72	11.04	-	-	-	G	144882723	T	G	144882723	3	3	484	1	0	0	0	0	1	0	0	0	11716	1580	55	5	3828	5	PDE4DIP	1	144882723	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	52092815	144882723	104367898	3	44373										
IGSF8	0	genome.wustl.edu	37	chr1	160064882	160064882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ctgacaatgcccagtgcagtAtctggggcctcgggcctata	12	12	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	160064882	160064882	A	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	missense	c.219	p.D73E	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	68	0	0	50	15	23.08	-	-	-	C	160064882	A	C	160064882	3	2	484	1	0	0	0	0	1	0	0	0	7658	446	16	5	1642	5	IGSF8	1	160064882	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09	15182159	160064882	89185739	4	44374										
RXRG	0	genome.wustl.edu	37	chr1	165398094	165398094	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cccactgcactcagagtccgTggggcactcactggggtatc	12	14	2	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	165398094	165398094	T	G	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.159	p.P53	0.287	pfam_DUF3345	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	71	0	0	64	17	20.99	-	-	-	G	165398094	T	G	165398094	2	3	484	1	0	0	0	0	0	0	0	1	13851	1683	59	5		5	RXRG	1	165398094	Silent	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	5333212	165398094	83852527	5	44375										
EDEM3	0	genome.wustl.edu	37	chr1	184681731	184681731	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agccaagaagaaagaatccaTtctaaaataaaaagtcacaa	5	7	2	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	184681731	184681731	T	G	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.1372	p.M458L	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	206	0	0	259	53	16.99	-	-	-	G	184681731	T	G	184681731	3	3	484	1	0	0	0	0	1	0	0	0	4948	1507	52	5	1454	5	EDEM3	1	184681731	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	19283637	184681731	64568890	6	44376										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220355687	220355687	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	catgcaaacacttccaaaaaAagaaactacctggtagaaga	6	9	0	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	220355687	220355687	A	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.2222	p.F741C	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	137	0	0	197	36	15.45	-	-	-	C	220355687	A	C	220355687	3	2	484	1	0	0	0	0	1	0	0	0	13019	14	1	5	2019	5	RAB3GAP2	1	220355687	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09	35673956	220355687	28894934	7	44377										
ANAPC1	0	genome.wustl.edu	37	chr2	112566736	112566736	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cagaaacaccaagtagcagtCcaatgcttgtcatttcatgg	8	10	2	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	112566736	112566736	C	T	SNP	ANAPC1	ENST00000427997	human	ensembl	69_37n	-1	novel	nonsense	c.2223	p.W741*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC1	HGNC	ENSG00000153107	124	0	0	99	20	16.81	-	-	-	T	112566736	C	T	112566736	4	4	484	1	0	0	0	0	0	1	0	0	598	855	30	2	2294	2	ANAPC1	2	112566736	Nonsense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09		112566736	130632637	8	44378										
RIF1	0	genome.wustl.edu	37	chr2	152299782	152299782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ttctccttcagggaactccaGctttgttcttaattcaatta	5	10	4	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	152299782	152299782	G	A	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.1744	p.A582T	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	346	0	0	208	67	24.36	-	-	-	A	152299782	G	A	152299782	3	1	484	1	0	0	0	0	1	0	0	0	13443	971	34	4	1806	4	RIF1	2	152299782	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	39733046	152299782	90899591	9	44379										
DCAF17	0	genome.wustl.edu	37	chr2	172336674	172336674	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	aatatggaactttacttaaaAgcattccactagtggagtca	7	7	1	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	172336674	172336674	A	C	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	1	known	missense	c.1393	p.S465R	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	373	0	0	266	76	22.22	-	-	-	C	172336674	A	C	172336674	3	2	484	1	0	0	0	0	1	0	0	0	4301	72	3	5	1443	5	DCAF17	2	172336674	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09	20036892	172336674	70862699	10	44380										
NR2C2	0	genome.wustl.edu	37	chr3	15065706	15065706	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggtacagttctcctggccacGgattctaaggtgacgttctc	11	11	3	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	15065706	15065706	G	A	SNP	NR2C2	ENST00000323373	human	ensembl	69_37n	1	known	silent	c.846	p.T282	0.230	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463	143	0	0	81	26	24.3	-	-	-	A	15065706	G	A	15065706	2	1	484	1	0	0	0	0	0	0	0	1	10696	1103	39	1		1	NR2C2	3	15065706	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09		15065706	182956724	11	44381										
VIPR1	0	genome.wustl.edu	37	chr3	42567473	42567473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggtttggatgacaaggcagcGagtttggatgaggtgggtct	18	4	1	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	42567473	42567473	G	T	SNP	VIPR1	ENST00000438259	human	ensembl	69_37n	1	known	missense	c.14	p.R5L	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	VIPR1	HGNC	ENSG00000114812	46	0	0	28	10	26.32	-	-	-	T	42567473	G	T	42567473	3	4	484	1	0	0	0	0	1	0	0	0	17266	1045	37	3	401	3	VIPR1	3	42567473	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	27501767	42567473	155454957	12	44382										
DLG1	0	genome.wustl.edu	37	chr3	196857476	196857476	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cactttcaaataaacaaaatCagatgtgttctttaaggcag	6	7	3	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	196857476	196857476	C	A	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396Y	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	330	0	0	222	62	21.83	-	-	-	A	196857476	C	A	196857476	3	1	484	1	0	0	0	0	1	0	0	0	4590	826	29	2	1692	2	DLG1	3	196857476	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	154290003	196857476	1164954	13	44383										
SEC31A	0	genome.wustl.edu	37	chr4	83795849	83795849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggccactgggactggctgatGctaaaatatgctgaacttgt	12	8	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	83795849	83795849	G	A	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.554	p.A185V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	166	0	0	107	28	20.59	-	-	-	A	83795849	G	A	83795849	3	1	484	1	0	0	0	0	1	0	0	0	14086	1319	46	4	3196	4	SEC31A	4	83795849	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09		83795849	107358427	14	44384										
ALPK1	0	genome.wustl.edu	37	chr4	113362126	113362126	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	acctcacagatccccagattCactccgttgatcagaaagtt	6	13	3	4			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	113362126	113362126	C	G	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	1	known	missense	c.3592	p.H1198D	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	193	0	0	139	34	19.65	-	-	-	G	113362126	C	G	113362126	3	3	484	1	0	0	0	0	1	0	0	0	544	826	29	2	3642	2	ALPK1	4	113362126	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	29566277	113362126	77792150	15	44385										
BBS7	0	genome.wustl.edu	37	chr4	122776652	122776652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	aatcctgattaccgccatttCcattgtgtagtgctaagaca	7	10	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	122776652	122776652	C	A	SNP	BBS7	ENST00000264499	human	ensembl	69_37n	-1	known	missense	c.593	p.G198V	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686	185	0	0	140	44	23.91	-	-	-	A	122776652	C	A	122776652	3	1	484	1	0	0	0	0	1	0	0	0	1345	855	30	2	1615	2	BBS7	4	122776652	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	9414526	122776652	68377624	16	44386										
MMAA	0	genome.wustl.edu	37	chr4	146560633	146560633	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gtagaatcaactcacagcagGaaaaaggagttagcccaggt	11	8	2	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	146560633	146560633	G	T	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	1	known	missense	c.342	p.R114S	1.000	pfam_ArgK,tigrfam_ArgK	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	125	0	0	84	31	26.96	-	-	-	T	146560633	G	T	146560633	3	4	484	1	0	0	0	0	1	0	0	0	9710	1165	41	2	344	2	MMAA	4	146560633	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	23783981	146560633	44593643	17	44387										
ERBB2IP	0	genome.wustl.edu	37	chr5	65372231	65372231	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gaaacccattcagacctgatGatgatgtaagttttctttgt	8	7	2	4			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	65372231	65372231	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.4051	p.D1351N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	421	0	0	286	88	23.53	-	-	-	A	65372231	G	A	65372231	3	1	484	1	0	0	0	0	1	0	0	0	5244	1290	45	2	4010	2	ERBB2IP	5	65372231	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09		65372231	115543029	18	44388										
NIPAL4	0	genome.wustl.edu	37	chr5	156899862	156899862	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cccttctcccgccccggaacCcactgttattagactggaag	8	16	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	156899862	156899862	C	A	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	1	known	missense	c.1295	p.P432H	0.991	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	42	0	0	33	18	34.62	-	-	-	A	156899862	C	A	156899862	3	1	484	1	0	0	0	0	1	0	0	0	10499	623	22	4	1317	4	NIPAL4	5	156899862	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	91527631	156899862	24015398	19	44389										
JARID2	0	genome.wustl.edu	37	chr6	15374373	15374373	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cagtgatgggattccgtggtCagaagaacgggtggtacgta	16	6	1	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	15374373	15374373	C	T	SNP	JARID2	ENST00000341776	human	ensembl	69_37n	1	known	missense	c.71	p.S24L	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	362	0	0	250	76	23.31	-	-	-	T	15374373	C	T	15374373	3	4	484	1	0	0	0	0	1	0	0	0	7999	838	29	2	77	2	JARID2	6	15374373	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09		15374373	155740694	20	44390										
TRIM38	0	genome.wustl.edu	37	chr6	25973465	25973465	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	aacttcatactatgtgcaatGtttccaagctttacttcgat	5	9	1	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	25973465	25973465	G	T	SNP	TRIM38	ENST00000349458	human	ensembl	69_37n	1	known	missense	c.826	p.V276F	0.350	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343	262	0	0	162	61	27.35	-	-	-	T	25973465	G	T	25973465	3	4	484	1	0	0	0	0	1	0	0	0	16608	1377	48	4	844	4	TRIM38	6	25973465	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	10599092	25973465	145141602	21	44391										
KIAA1919	0	genome.wustl.edu	37	chr6	111587599	111587599	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tccatcttctgggggacattTgcagcctgcaggggcctggc	14	12	2	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	111587599	111587599	T	G	SNP	KIAA1919	ENST00000368847	human	ensembl	69_37n	1	known	missense	c.834	p.F278L	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	239	2	0.83	172	56	24.56	-	-	-	G	111587599	T	G	111587599	3	3	484	1	0	0	0	0	1	0	0	0	8314	1809	63	5	848	5	KIAA1919	6	111587599	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	85614134	111587599	59527468	22	44392										
SASH1	0	genome.wustl.edu	37	chr6	148867225	148867225	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gatcagcccgagcgggacgtCgccgccaacatggaccagat	13	14	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	148867225	148867225	C	T	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	silent	c.3423	p.V1141	0.102	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	51	0	0	26	10	27.03	-	-	-	T	148867225	C	T	148867225	2	4	484	1	0	0	0	0	0	0	0	1	13935	871	31	1		1	SASH1	6	148867225	Silent	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	37279626	148867225	22247842	23	44393										
IGF2R	0	genome.wustl.edu	37	chr6	160500677	160500677	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gcagtcgggccagaacaaggAggctgtaaggacggaggagt	18	7	0	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	160500677	160500677	A	G	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.5544	p.G1848	0.973	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	160	0	0	114	33	22.45	-	-	-	G	160500677	A	G	160500677	2	3	484	1	0	0	0	0	0	0	0	1	7630	291	11	5		5	IGF2R	6	160500677	Silent	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09	11633452	160500677	10614390	24	44394										
MCM4	0	genome.wustl.edu	37	chr8	48878885	48878885	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggaccgcggccgcattgcagAgcccagtgtgtgcgggcgct	17	13	0	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	48878885	48878885	A	T	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	missense	c.971	p.E324V	1.000	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	19	0	0	15	5	25	-	-	-	T	48878885	A	T	48878885	3	4	484	1	0	0	0	0	1	0	0	0	9460	304	11	5	1001	5	MCM4	8	48878885	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09		48878885	97485137	25	44395										
SLCO5A1	0	genome.wustl.edu	37	chr8	70585135	70585135	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gctccaaggcagcggggctcTcttccagccccgggtccgca	13	17	1	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	70585135	70585135	T	C	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.2516	p.E839G	0.998	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	89	0	0	59	20	25.32	-	-	-	C	70585135	T	C	70585135	3	2	484	1	0	0	0	0	1	0	0	0	14820	1551	54	5	34	5	SLCO5A1	8	70585135	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	21706250	70585135	75778887	26	44396										
OR13C8	0	genome.wustl.edu	37	chr9	107331596	107331596	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gagtccttatctcagttatcAtctttgattctcacctgcac	5	12	4	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107331596	107331596	A	G	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.148	p.I50V	0.046	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	589	1	0.17	408	167	28.94	-	-	-	G	107331596	A	G	107331596	3	3	484	1	0	0	0	0	1	0	0	0	11011	217	8	5	150	5	OR13C8	9	107331596	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09		107331596	33881835	27	44397										
OR13C8	0	genome.wustl.edu	37	chr9	107332384	107332384	+	Nonsense_Mutation	SNP	T	T	A													0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gctgtcaaaaacatactgtgTaggaaaaacttttctgatgg							TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107332384	107332384	T	A	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	nonsense	c.936	p.C312*	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	51	0	0	44	18	29.03	-	-	-	A	107332384	T	A	107332384	4	1	484	1	0	0	0	0	0	1	0	0	11011	1644	57	5	938	5	OR13C8	9	107332384	Nonsense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09	788	107332384	33881047	28	44398	359	2								
OR13C8	0	genome.wustl.edu	37	chr9	107332385	107332385	+	Missense_Mutation	SNP	A	A	G													0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ctgtcaaaaacatactgtgtAggaaaaacttttctgatgga							TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107332385	107332385	A	G	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.937	p.R313G	0.126	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	51	0	0	45	18	28.57	-	-	-	G	107332385	A	G	107332385	3	3	484	1	0	0	0	0	1	0	0	0	11011	411	15	5	939	5	OR13C8	9	107332385	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09	1	107332385	33881046	29	44399	359	2								
GATA3	0	genome.wustl.edu	37	chr10	8115982	8115983	+	Frame_Shift_Ins	INS	-	-	T													0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agcatggtcaccgccatgggINSttagagccctgctcgatgct							TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	8115982	8115983	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1331_1332	p.*445fs	1.000:0.913	NULL	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	89	0	0	57	12	17.39	-	-	-	T	8115983	-	T	8115982	7	5	484	1	0	1	1	0	0	0	0	0	6305	1261	44	0	1349	0	GATA3	10	8115982	Frame_Shift_Ins	INS	-	TCGA-BH-A0AZ-01A-21D-A12Q-09		8115982	127418765	30	44400										
CUBN	0	genome.wustl.edu	37	chr10	16893319	16893322	+	Frame_Shift_Del	DEL	ACAG	ACAG	-													0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tgaggtgaattactttgtttAcaggtgcaattatgatccat							TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	16893319	16893322	ACAG	-	DEL	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	frame_shift_del	c.9578_9575	p.P3192fs	0.575:0.554:0.546:0.993	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	232	0	0	164	39	18.93	-	-	-	-	16893322	ACAG	-	16893319	7	5	484	1	0	1	0	1	0	0	0	0	4082	391	14	0	1325	0	CUBN	10	16893319	Frame_Shift_Del	DEL	ACAG	TCGA-BH-A0AZ-01A-21D-A12Q-09	8777337	16893319	118641428	31	44401										
OR8H2	0	genome.wustl.edu	37	chr11	55872586	55872586	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gggactgacactttctgaagAgatccagatggctctgttta	11	8	2	4			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	11	55872586	55872586	A	G	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.68	p.E23G	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	402	1	0.25	319	91	22.2	-	-	-	G	55872586	A	G	55872586	3	3	484	1	0	0	0	0	1	0	0	0	11311	304	11	5	70	5	OR8H2	11	55872586	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09		55872586	79133930	32	44402										
DDX11	0	genome.wustl.edu	37	chr12	31256888	31256888	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	aaaggtgaaacccaggaggaGagtgtggagtccagagtgct	16	6	0	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	31256888	31256888	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.2834	p.R945K	0.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	121	0	0	73	31	29.81	-	-	-	A	31256888	G	A	31256888	3	1	484	1	0	0	0	0	1	0	0	0	4374	942	33	2	2941	2	DDX11	12	31256888	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09		31256888	102595007	33	44403										
LRIG3	0	genome.wustl.edu	37	chr12	59283825	59283825	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	atcttgggtgggatagctgaGattcggttcctgttcagctt	13	7	2	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	59283825	59283825	G	C	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.612	p.I204M	0.976	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	450	1	0.22	364	129	26.17	-	-	-	C	59283825	G	C	59283825	3	2	484	1	0	0	0	0	1	0	0	0	9012	932	33	2	2807	2	LRIG3	12	59283825	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	28026937	59283825	74568070	34	44404										
CHD8	0	genome.wustl.edu	37	chr14	21862192	21862192	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gaacaggctcccaccatttgGgcaattcaggaccaggaggc	12	12	1	0			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	21862192	21862192	G	T	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.5762	p.P1921H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	42	0	0	21	4	16	-	-	-	T	21862192	G	T	21862192	3	4	484	1	0	0	0	0	1	0	0	0	3360	1232	43	4	2011	4	CHD8	14	21862192	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09		21862192	85487348	35	44405										
LRRC16B	0	genome.wustl.edu	37	chr14	24538364	24538364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agggccccctgatccaggccGgcggactgcccccctgaagc	13	18	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	24538364	24538364	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.4001	p.R1334Q	0.968	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	24	0	0	18	6	25	-	-	-	A	24538364	G	A	24538364	3	1	484	1	0	0	0	0	1	0	0	0	9038	1116	39	1	4155	1	LRRC16B	14	24538364	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	2676172	24538364	82811176	36	44406										
HERC1	0	genome.wustl.edu	37	chr15	64017562	64017562	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tccaatatgcagtgtcctgtTcctctggagacacaggggag	12	10	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	15	64017562	64017562	T	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3497	p.E1166V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	113	0	0	131	35	20.83	-	-	-	A	64017562	T	A	64017562	3	1	484	1	0	0	0	0	1	0	0	0	7108	1783	62	5	11332	5	HERC1	15	64017562	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09		64017562	38513830	37	44407										
CLEC10A	0	genome.wustl.edu	37	chr17	6978532	6978532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cagtcgtctggctggcctggCttccagttcctgagaggaaa	13	11	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	6978532	6978532	C	A	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	missense	c.792	p.K264N	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC10A	HGNC	ENSG00000132514	33	0	0	11	6	33.33	-	-	-	A	6978532	C	A	6978532	3	1	484	1	0	0	0	0	1	0	0	0	3525	796	28	4	162	4	CLEC10A	17	6978532	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09		6978532	74216678	38	44408										
ULK2	0	genome.wustl.edu	37	chr17	19700727	19700727	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	accttagtaggagagccaatGattgttggcaaaggagtttt	12	5	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	19700727	19700727	G	A	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	silent	c.1791	p.I597	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	41	0	0	33	9	21.43	-	-	-	A	19700727	G	A	19700727	2	1	484	1	0	0	0	0	0	0	0	1	17073	1280	45	2		2	ULK2	17	19700727	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	12722195	19700727	61494483	39	44409										
KPNB1	0	genome.wustl.edu	37	chr17	45754386	45754386	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	atttccttgattcttggcagGtttgtttggcagctgtgggc	13	7	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	45754386	45754386	G	C	SNP	KPNB1	ENST00000290158	human	ensembl	69_37n	1	known	missense	c.1996	p.V666L	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	355	0	0	303	94	23.68	-	-	-	C	45754386	G	C	45754386	3	2	484	1	0	0	0	0	1	0	0	0	8488	1275	44	4	2062	4	KPNB1	17	45754386	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	26053659	45754386	35440824	40	44410										
CACNA1G	0	genome.wustl.edu	37	chr17	48668853	48668853	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tcggtgctgcggaccttccgCctgatgcgtgtgctgaagct	14	12	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	48668853	48668853	C	A	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	silent	c.2511	p.R837	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	67	0	0	38	9	19.15	-	-	-	A	48668853	C	A	48668853	2	1	484	1	0	0	0	0	0	0	0	1	2569	726	26	4		4	CACNA1G	17	48668853	Silent	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	2914467	48668853	32526357	41	44411										
MUC16	0	genome.wustl.edu	37	chr19	9091544	9091544	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	ggagtgtgtcattcctctagAggttgactcagggagagcag	15	7	3	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	9091544	9091544	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.271	p.S91P	0.002	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	164	0	0	105	34	24.46	-	-	-	G	9091544	A	G	9091544	3	3	484	1	0	0	0	0	1	0	0	0	10045	304	11	5	43588	5	MUC16	19	9091544	Missense_Mutation	SNP	A	TCGA-BH-A0AZ-01A-21D-A12Q-09		9091544	50037439	42	44412										
MAN2B1	0	genome.wustl.edu	37	chr19	12768878	12768878	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tcttgggcccgacacttactGaggggtgcactgtctccgga	13	12	2	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12768878	12768878	G	C	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	silent	c.1308	p.L436	0.998	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	14	0	0	12	6	33.33	-	-	-	C	12768878	G	C	12768878	2	2	484	1	0	0	0	0	0	0	0	1	9287	1304	45	2		2	MAN2B1	19	12768878	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	3677334	12768878	46360105	43	44413			1	75		3	3	370	G		1.914966e-07
MAN2B1	0	genome.wustl.edu	37	chr19	12769137	12769137	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gggccatccgcgtaagggaaGaagtcgtcatgtttcactga	13	9	2	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769137	12769137	G	C	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	missense	c.1131	p.F377L	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	60	0	0	40	12	23.08	-	-	-	C	12769137	G	C	12769137	3	2	484	1	0	0	0	0	1	0	0	0	9287	933	33	2	1968	2	MAN2B1	19	12769137	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	259	12769137	46359846	44	44414			1	75		3	3	370	G		1.914966e-07
MAN2B1	0	genome.wustl.edu	37	chr19	12769247	12769247	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agtttccccaaataccaggtGaggttggccttgttcagctc	10	11	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769247	12769247	G	A	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	silent	c.1104	p.L368	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	80	0	0	60	24	28.57	-	-	-	A	12769247	G	A	12769247	2	1	484	1	0	0	0	0	0	0	0	1	9287	1277	45	2		2	MAN2B1	19	12769247	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	110	12769247	46359736	45	44415			1	75		3	3	370	G		1.914966e-07
PGLS	0	genome.wustl.edu	37	chr19	17627089	17627089	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tacgccaagaagctgagacaGgtgagccccgaggagcggcc	15	12	0	3			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	17627089	17627089	G	A	SNP	PGLS	ENST00000252603	human	ensembl	69_37n	1	known	silent	c.396	p.Q132	1.000	tigrfam_6-phosphogluconolactonase_DevB	tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	PGLS	HGNC	ENSG00000130313	49	0	0	39	12	23.53	-	-	-	A	17627089	G	A	17627089	2	1	484	1	0	0	0	0	0	0	0	1	11866	1014	35	4		4	PGLS	19	17627089	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	4857842	17627089	41501894	46	44416										
ZNF526	0	genome.wustl.edu	37	chr19	42728940	42728940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agctcctggcccaccaggatGcccacctccgagagtctgca	10	17	1	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42728940	42728940	G	A	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	missense	c.385	p.A129T	0.057	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	30	0	0	25	7	21.88	-	-	-	A	42728940	G	A	42728940	3	1	484	1	0	0	0	0	1	0	0	0	18063	1319	46	4	387	4	ZNF526	19	42728940	Missense_Mutation	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	25101851	42728940	16400043	47	44417										
ERF	0	genome.wustl.edu	37	chr19	42753286	42753286	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tgcaggaaggcgcgggggctGaggtggtagttgtagacgct	20	6	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42753286	42753286	G	A	SNP	ERF	ENST00000222329	human	ensembl	69_37n	-1	known	silent	c.978	p.L326	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERF	HGNC	ENSG00000105722	78	0	0	41	19	31.67	-	-	-	A	42753286	G	A	42753286	2	1	484	1	0	0	0	0	0	0	0	1	5258	1277	45	2		2	ERF	19	42753286	Silent	SNP	G	TCGA-BH-A0AZ-01A-21D-A12Q-09	24346	42753286	16375697	48	44418										
BCAT2	0	genome.wustl.edu	37	chr19	49310293	49310293	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	gcatatcttctgggaccacaCagaagccaagggacagagag	12	10	2	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	49310293	49310293	C	G	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	silent	c.63	p.L21	0.739	NULL	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	77	0	0	67	25	27.17	-	-	-	G	49310293	C	G	49310293	2	3	484	1	0	0	0	0	0	0	0	1	1359	465	17	4		4	BCAT2	19	49310293	Silent	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	6557007	49310293	9818690	49	44419										
PRDM15	0	genome.wustl.edu	37	chr21	43291676	43291676	+	Frame_Shift_Del	DEL	C	C	-													0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	tcagtgtcggacacctcattCcctagagatgtttccaagag							TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	21	43291676	43291676	C	-	DEL	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	frame_shift_del	c.468	p.N157fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	85	0	0	55	19	25.33	-	-	-	-	43291676	C	-	43291676	7	5	484	1	0	1	0	1	0	0	0	0	12537	842	30	0	4167	0	PRDM15	21	43291676	Frame_Shift_Del	DEL	C	TCGA-BH-A0AZ-01A-21D-A12Q-09		43291676	4838219	50	44420										
ARFGAP3	0	genome.wustl.edu	37	chr22	43227644	43227644	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cccacgctgtgtcactcaccTgaaacaaggcgagaaaagtc	9	13	2	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	22	43227644	43227644	T	G	SNP	ARFGAP3	ENST00000263245	human	ensembl	69_37n	-1	known	splice_site	c.478-2	e6-2	0.984	-	-	-	no_errors	ARFGAP3	HGNC	ENSG00000242247	123	0	0	86	38	30.65	-	-	-	G	43227644	T	G	43227644	5	3	484	1	0	0	0	0	0	0	1	0	853	1594	55	5	1118	5	ARFGAP3	22	43227644	Splice_Site	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09		43227644	8076922	51	44421										
LAS1L	0	genome.wustl.edu	37	chrX	64734716	64734716	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	cactcactcagtcttgcatgTtgagggttccagccgctgct	10	13	3	1			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	64734716	64734716	T	A	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.2065	p.T689S	0.000	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	80	0	0	46	18	28.12	-	-	-	A	64734716	T	A	64734716	3	1	484	1	0	0	0	0	1	0	0	0	8690	1725	60	5	147	5	LAS1L	23	64734716	Missense_Mutation	SNP	T	TCGA-BH-A0AZ-01A-21D-A12Q-09		64734716	90535844	52	44422										
ODZ1	0	genome.wustl.edu	37	chrX	123630873	123630873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192307692307692	10	0.00350635758590907	3.17254174397032	4.6530612244898	2.61734693877551	0.680172297752053	1	7	agagaagacttaccttaattCcaaaatactaacggagtttc	6	8	0	2			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	123630873	123630873	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.3688	p.E1230K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	92	0	0	56	24	30	-	-	-	T	123630873	C	T	123630873	3	4	484	1	0	0	0	0	1	0	0	0	10907	864	30	2	4562	2	ODZ1	23	123630873	Missense_Mutation	SNP	C	TCGA-BH-A0AZ-01A-21D-A12Q-09	58896157	123630873	31639687	53	44423										
FOXD3	0	genome.wustl.edu	37	chr1	63788817	63788817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tggacatcgatgtggtgggcGagggcgacgacgggctggaa	20	7	0	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	1	63788817	63788817	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	69_37n	1	known	missense	c.88	p.E30K	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140	9	0	0	14	4	22.22	-	-	-	A	63788817	G	A	63788817	3	1	485	1	0	0	0	0	1	0	0	0	6044	1059	37	1	90	1	FOXD3	1	63788817	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		63788817	185461804	1	44424										
SFT2D2	0	genome.wustl.edu	37	chr1	168204351	168204351	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ccttttagtaccatcttcctCatgggaccagtgaaacagct	7	12	2	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	1	168204351	168204351	C	T	SNP	SFT2D2	ENST00000271375	human	ensembl	69_37n	1	known	silent	c.249	p.L83	1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	SFT2D2	HGNC	ENSG00000213064	330	0	0	315	78	19.85	-	-	-	T	168204351	C	T	168204351	2	4	485	1	0	0	0	0	0	0	0	1	14274	813	29	2		2	SFT2D2	1	168204351	Silent	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	104415534	168204351	81046270	2	44425										
HSD11B1	0	genome.wustl.edu	37	chr1	209880330	209880330	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	caaccacatcaccaacacttCtttgaatctttttcatgatg	3	12	4	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	1	209880330	209880330	C	G	SNP	HSD11B1	ENST00000261465	human	ensembl	69_37n	1	known	missense	c.374	p.S125C	0.001	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD11B1	HGNC	ENSG00000117594	150	0	0	103	30	22.56	-	-	-	G	209880330	C	G	209880330	3	3	485	1	0	0	0	0	1	0	0	0	7426	913	32	2	388	2	HSD11B1	1	209880330	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	41675979	209880330	39370291	3	44426										
GPATCH2	0	genome.wustl.edu	37	chr1	217688186	217688186	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	atggtgatgagaatccggggAaaaatgaaccattctcttgt	11	6	1	3			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	1	217688186	217688186	A	T	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	missense	c.1144	p.S382T	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	89	0	0	87	18	17.14	-	-	-	T	217688186	A	T	217688186	3	4	485	1	0	0	0	0	1	0	0	0	6641	246	9	5	462	5	GPATCH2	1	217688186	Missense_Mutation	SNP	A	TCGA-BH-A0B0-01A-21D-A10Y-09	7807856	217688186	31562435	4	44427										
TTLL4	0	genome.wustl.edu	37	chr2	219619083	219619083	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cctccactttccagtcaatcAgtgactccctcctggctgtg	7	16	2	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	2	219619083	219619083	A	T	SNP	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	missense	c.3571	p.S1191C	0.064	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	43	0	0	34	23	40.35	-	-	-	T	219619083	A	T	219619083	3	4	485	1	0	0	0	0	1	0	0	0	16826	188	7	5	3641	5	TTLL4	2	219619083	Missense_Mutation	SNP	A	TCGA-BH-A0B0-01A-21D-A10Y-09		219619083	23580290	5	44428										
ZNF589	0	genome.wustl.edu	37	chr3	48309446	48309446	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	atacctgcccttcttgccctCtggcctttggcagtcagcag	9	15	3	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	3	48309446	48309446	C	T	SNP	ZNF589	ENST00000354698	human	ensembl	69_37n	1	known	silent	c.265	p.L89	0.112	smart_Znf_C2H2-like,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048	88	0	0	73	21	22.34	-	-	-	T	48309446	C	T	48309446	2	4	485	1	0	0	0	0	0	0	0	1	18117	912	32	2		2	ZNF589	3	48309446	Silent	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		48309446	149712984	6	44429										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	181	0	0	57	15	20.83	-	-	-	A	178936091	G	A	178936091	3	1	485	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	130626645	178936091	19086339	7	44430										
EIF2B5	0	genome.wustl.edu	37	chr3	183856022	183856022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ctggattgtcatatcagcatCtgttctcctcaggtgagctc	9	11	5	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	3	183856022	183856022	C	T	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	silent	c.753	p.I251	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	184	0	0	161	49	23.33	-	-	-	T	183856022	C	T	183856022	2	4	485	1	0	0	0	0	0	0	0	1	5039	903	32	2		2	EIF2B5	3	183856022	Silent	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	4919931	183856022	14166408	8	44431										
ADAMTS16	0	genome.wustl.edu	37	chr5	5262783	5262783	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cctgcaggacagatgaccgtGagagagggctgctacagaga	15	9	0	5			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	5	5262783	5262783	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.2676	p.V892	0.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	87	0	0	64	34	34.69	-	-	-	A	5262783	G	A	5262783	2	1	485	1	0	0	0	0	0	0	0	1	261	1277	45	2		2	ADAMTS16	5	5262783	Silent	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		5262783	175652477	9	44432										
BRIX1	0	genome.wustl.edu	37	chr5	34915891	34915891	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ggaggctttgcagttcaggcGaagaagccaaaaagaaacga	13	7	1	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	5	34915891	34915891	G	A	SNP	BRIX1	ENST00000336767	human	ensembl	69_37n	1	known	silent	c.48	p.A16	0.992	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	83	0	0	96	33	25.58	-	-	-	A	34915891	G	A	34915891	2	1	485	1	0	0	0	0	0	0	0	1	1523	1045	37	1		1	BRIX1	5	34915891	Silent	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	29653108	34915891	145999369	10	44433										
TGFBI	0	genome.wustl.edu	37	chr5	135389690	135389690	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tccacagccattgaccttttCagacaagccggcctcggcaa	8	15	1	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	5	135389690	135389690	C	T	SNP	TGFBI	ENST00000514554	human	ensembl	69_37n	1	novel	nonsense	c.337	p.Q113*	0.111	pfam_FAS1_domain,superfamily_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TGFBI	HGNC	ENSG00000120708	105	0	0	113	36	24.16	-	-	-	T	135389690	C	T	135389690	4	4	485	1	0	0	0	0	0	1	0	0	15915	825	29	2	1219	2	TGFBI	5	135389690	Nonsense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	100473799	135389690	45525570	11	44434										
KIAA0141	0	genome.wustl.edu	37	chr5	141309823	141309823	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ttccagctcagtgtttccatCgctttcaacttcctgggtaa	7	12	2	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	5	141309823	141309823	C	T	SNP	KIAA0141	ENST00000194118	human	ensembl	69_37n	1	known	silent	c.738	p.I246	0.996	smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791	168	0	0	129	52	28.73	-	-	-	T	141309823	C	T	141309823	2	4	485	1	0	0	0	0	0	0	0	1	8208	874	31	1		1	KIAA0141	5	141309823	Silent	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	5920133	141309823	39605437	12	44435										
HIST1H2AG	0	genome.wustl.edu	37	chr6	27100867	27100867	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cgctatgtctggacgtggcaAgcagggaggcaaagcccgcg	16	11	1	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	6	27100867	27100867	A	G	SNP	HIST1H2AG	ENST00000359193	human	ensembl	69_37n	1	known	missense	c.17	p.K6R	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787	45	0	0	36	13	26.53	-	-	-	G	27100867	A	G	27100867	3	3	485	1	0	0	0	0	1	0	0	0	7184	72	3	5	19	5	HIST1H2AG	6	27100867	Missense_Mutation	SNP	A	TCGA-BH-A0B0-01A-21D-A10Y-09		27100867	144014200	13	44436										
IGF2R	0	genome.wustl.edu	37	chr6	160494353	160494353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ggatgggtccccttgtccctCcaaatccggcctgagctata	10	14	0	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	6	160494353	160494353	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.4799	p.S1600F	0.995	superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	149	0	0	109	34	23.78	-	-	-	T	160494353	C	T	160494353	3	4	485	1	0	0	0	0	1	0	0	0	7630	855	30	2	4933	2	IGF2R	6	160494353	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	133393486	160494353	10620714	14	44437										
FBXL13	0	genome.wustl.edu	37	chr7	102453790	102453790	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tcctgcttgaggctgaaggtCacgctgcttggtcttcactg	12	11	3	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	7	102453790	102453790	C	G	SNP	FBXL13	ENST00000313221	human	ensembl	69_37n	-1	known	nonstop	c.2207	p.*736S	0.000	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL13	HGNC	ENSG00000161040	347	0	0	243	76	23.82	-	-	-	G	102453790	C	G	102453790	4	3	485	1	0	0	0	0	0	0	0	0	5755	837	29	2	4	2	FBXL13	7	102453790	Nonstop_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		102453790	56684873	15	44438										
KIF13B	0	genome.wustl.edu	37	chr8	28999688	28999688	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	acttactgggttatcttcttCacactctttccactcctgat	4	13	4	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	8	28999688	28999688	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.2320	p.E774K	1.000	pfam_KIF1B	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	371	1	0.27	235	53	18.4	-	-	-	T	28999688	C	T	28999688	3	4	485	1	0	0	0	0	1	0	0	0	8327	835	29	2	3248	2	KIF13B	8	28999688	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		28999688	117364334	16	44439										
XKR4	0	genome.wustl.edu	37	chr8	56436760	56436760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	atgatgcccttattcaggagCggttggagtacgaaaccact	11	9	1	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	8	56436760	56436760	C	T	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1927	p.R643W	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	122	0	0	126	49	28	-	-	-	T	56436760	C	T	56436760	3	4	485	1	0	0	0	0	1	0	0	0	17530	759	27	1	1937	1	XKR4	8	56436760	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	27437072	56436760	89927262	17	44440										
IL33	0	genome.wustl.edu	37	chr9	6252967	6252967	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	gttatgagatatatgttgaaGacttgaaaaaagatgaaaag	10	1	0	6			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	9	6252967	6252967	G	A	SNP	IL33	ENST00000381434	human	ensembl	69_37n	1	known	missense	c.445	p.D149N	0.826	NULL	NULL	-	no_errors	IL33	HGNC	ENSG00000137033	138	0	0	67	21	23.86	-	-	-	A	6252967	G	A	6252967	3	1	485	1	0	0	0	0	1	0	0	0	7747	942	33	2	459	2	IL33	9	6252967	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		6252967	134960464	18	44441										
TMEM38B	0	genome.wustl.edu	37	chr9	108483865	108483865	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cctagtttcccagggctattCatatctacctgttcaactac	5	13	3	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	9	108483865	108483865	C	T	SNP	TMEM38B	ENST00000374692	human	ensembl	69_37n	1	known	missense	c.317	p.S106L	0.792	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209	243	0	0	143	50	25.91	-	-	-	T	108483865	C	T	108483865	3	4	485	1	0	0	0	0	1	0	0	0	16255	838	29	2	327	2	TMEM38B	9	108483865	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	102230898	108483865	32729566	19	44442										
SVEP1	0	genome.wustl.edu	37	chr9	113166798	113166798	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tttctgacaggtgaatgtatCtgtatctgtatccatcgtat	8	7	3	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	9	113166798	113166798	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.9475	p.D3159H	0.982	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	201	0	0	135	40	22.86	-	-	-	G	113166798	C	G	113166798	3	3	485	1	0	0	0	0	1	0	0	0	15511	913	32	2	1280	2	SVEP1	9	113166798	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	4682933	113166798	28046633	20	44443										
CYP2C9	0	genome.wustl.edu	37	chr10	96740960	96740960	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ctaaagtccaggaagagattGaacgtgtgattggcagaaac	12	6	0	4			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	10	96740960	96740960	G	A	SNP	CYP2C9	ENST00000260682	human	ensembl	69_37n	1	known	missense	c.982	p.E328K	0.976	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C9	HGNC	ENSG00000138109	254	0	0	141	37	20.79	-	-	-	A	96740960	G	A	96740960	3	1	485	1	0	0	0	0	1	0	0	0	4199	1291	45	2	1008	2	CYP2C9	10	96740960	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		96740960	38793787	21	44444										
AASDHPPT	0	genome.wustl.edu	37	chr11	105962115	105962115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tgcagcggcttgaatttgatCtatctccattaaacttggat	8	8	2	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	11	105962115	105962115	C	G	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	1	known	missense	c.604	p.L202V	0.996	superfamily_4-PPantetheinyl_Trfase	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	299	0	0	115	32	21.77	-	-	-	G	105962115	C	G	105962115	3	3	485	1	0	0	0	0	1	0	0	0	23	912	32	2	618	2	AASDHPPT	11	105962115	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		105962115	29044401	22	44445										
VWF	0	genome.wustl.edu	37	chr12	6125319	6125319	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	gagacgtccgtgaccaggatGaccaccgcctttgaggctcc	12	14	0	4			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	12	6125319	6125319	G	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.5391	p.V1797	0.443	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	65	0	0	64	28	30.43	-	-	-	T	6125319	G	T	6125319	2	4	485	1	0	0	0	0	0	0	0	1	17343	1277	45	2		2	VWF	12	6125319	Silent	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		6125319	127726576	23	44446										
DNAJC14	0	genome.wustl.edu	37	chr12	56221997	56221997	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ggtggcaaaagttgctagaaGaaccatttcctccctcagag	10	10	1	3			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	12	56221997	56221997	G	A	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	missense	c.446	p.S149F	0.314	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	124	0	0	86	25	22.52	-	-	-	A	56221997	G	A	56221997	3	1	485	1	0	0	0	0	1	0	0	0	4668	942	33	2	1686	2	DNAJC14	12	56221997	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	50096678	56221997	77629898	24	44447										
LRRIQ1	0	genome.wustl.edu	37	chr12	85449856	85449856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tagccaaaaatctagtggatGaaaattcaaagaagcaggaa	9	5	2	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	12	85449856	85449856	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.1285	p.E429K	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	102	0	0	55	19	25.68	-	-	-	A	85449856	G	A	85449856	3	1	485	1	0	0	0	0	1	0	0	0	9095	1291	45	2	1311	2	LRRIQ1	12	85449856	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	29227859	85449856	48402039	25	44448										
TOX4	0	genome.wustl.edu	37	chr14	21955713	21955713	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	agatgtggttggccactttgAtgacctggcagacccttcct	11	11	0	4			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	14	21955713	21955713	A	T	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	missense	c.179	p.D60V	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	177	0	0	112	38	25.17	-	-	-	T	21955713	A	T	21955713	3	4	485	1	0	0	0	0	1	0	0	0	16476	333	12	5	189	5	TOX4	14	21955713	Missense_Mutation	SNP	A	TCGA-BH-A0B0-01A-21D-A10Y-09		21955713	85393827	26	44449										
NR2E3	0	genome.wustl.edu	37	chr15	72109942	72109942	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ctttgaggtttatcactgcgGaacgcatcgagctcctcttt	9	11	2	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	15	72109942	72109942	G	C	SNP	NR2E3	ENST00000326995	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NR2E3	HGNC	ENSG00000031544	111	0	0	102	33	24.44	-	-	-	C	72109942	G	C	72109942	1	2	485	0	1	0	0	0	0	0	0	0	10699	1175	41	2		2	NR2E3	15	72109942	RNA	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		72109942	30421450	27	44450										
ADAMTS7	0	genome.wustl.edu	37	chr15	79090438	79090438	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	atgaagtagtcctcgttggaGagctggaacacacctttctg	11	9	1	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	15	79090438	79090438	G	A	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	silent	c.474	p.L158	0.518	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	101	0	0	114	35	23.49	-	-	-	A	79090438	G	A	79090438	2	1	485	1	0	0	0	0	0	0	0	1	271	929	33	2		2	ADAMTS7	15	79090438	Silent	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	6980496	79090438	23440954	28	44451										
RASGRF1	0	genome.wustl.edu	37	chr15	79317805	79317805	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cttttcagacatgggcacctGaatgagggaacctgtgggtg	14	8	1	3			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	15	79317805	79317805	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	nonsense	c.1393	p.Q465*	1.000	smart_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	46	0	0	45	22	32.84	-	-	-	A	79317805	G	A	79317805	4	1	485	1	0	0	0	0	0	1	0	0	13155	1299	45	2	2504	2	RASGRF1	15	79317805	Nonsense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	227367	79317805	23213587	29	44452										
CRAMP1L	0	genome.wustl.edu	37	chr16	1712794	1712794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ttcttcctgccaaagccccgGaagctgcggaaccggcacct	10	16	1	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	16	1712794	1712794	G	A	SNP	CRAMP1L	ENST00000415022	human	ensembl	69_37n	1	novel	missense	c.100	p.E34K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRAMP1L	HGNC	ENSG00000007545	46	0	0	47	12	20.34	-	-	-	A	1712794	G	A	1712794	3	1	485	1	0	0	0	0	1	0	0	0	3876	1161	41	2	2674	2	CRAMP1L	16	1712794	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		1712794	88641959	30	44453										
C16orf59	0	genome.wustl.edu	37	chr16	2510938	2510938	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	agagacaaggcccccagcctGaaatctaggtccattgtcac	9	13	2	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	16	2510938	2510938	G	A	SNP	C16orf59	ENST00000565716	human	ensembl	69_37n	1	known	missense	c.1	p.E1K	0.082	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C16orf59	HGNC	ENSG00000162062	82	0	0	81	20	19.8	-	-	-	A	2510938	G	A	2510938	3	1	485	1	0	0	0	0	1	0	0	0	1836	1277	45	2	332	2	C16orf59	16	2510938	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	798144	2510938	87843815	31	44454										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	77	0	0	57	26	31.33	-	-	-	T	7578406	C	T	7578406	3	4	485	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		7578406	73616804	32	44455										
MYH10	0	genome.wustl.edu	37	chr17	8397132	8397132	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tgctgctcctgaagactgttCttctcctcttccagctgccg	8	15	3	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	17	8397132	8397132	C	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.4098	p.K1366N	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	193	0	0	128	61	32.28	-	-	-	A	8397132	C	A	8397132	3	1	485	1	0	0	0	0	1	0	0	0	10102	912	32	2	1943	2	MYH10	17	8397132	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	818726	8397132	72798078	33	44456										
STAT3	0	genome.wustl.edu	37	chr17	40481441	40481441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	aacttacatcacaattggctCggcccccattcccacatctc	4	17	2	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	17	40481441	40481441	C	T	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	missense	c.1268	p.R423Q	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	182	1	0.54	78	49	38.28	-	-	-	T	40481441	C	T	40481441	3	4	485	1	0	0	0	0	1	0	0	0	15357	884	31	1	1088	1	STAT3	17	40481441	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	32084309	40481441	40713769	34	44457										
MUC16	0	genome.wustl.edu	37	chr19	9091474	9091474	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ttgtagcagggtagttcctaGagggagttccattgacctgg	14	7	0	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	19	9091474	9091474	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.341	p.S114C	0.004	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	132	0	0	112	38	25.33	-	-	-	C	9091474	G	C	9091474	3	2	485	1	0	0	0	0	1	0	0	0	10045	942	33	2	43518	2	MUC16	19	9091474	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		9091474	50037509	35	44458										
NOP56	0	genome.wustl.edu	37	chr20	2636074	2636074	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	gaaaccgaagggaactgaatGaggacaagctggagaagctg	15	6	0	3			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	20	2636074	2636074	G	A	SNP	NOP56	ENST00000329276	human	ensembl	69_37n	1	known	missense	c.673	p.E225K	1.000	NULL	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP56	HGNC	ENSG00000101361	206	0	0	214	59	21.61	-	-	-	A	2636074	G	A	2636074	3	1	485	1	0	0	0	0	1	0	0	0	10611	1291	45	2	695	2	NOP56	20	2636074	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		2636074	60389446	36	44459										
FITM2	0	genome.wustl.edu	37	chr20	42935837	42935837	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ggtgagggcaatgaaaggcaGaaggagacagaacgtccagg	17	6	0	5			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	20	42935837	42935837	G	A	SNP	FITM2	ENST00000396825	human	ensembl	69_37n	-1	known	silent	c.217	p.L73	0.986	pfam_FIT	pfam_FIT	-	no_errors	FITM2	HGNC	ENSG00000197296	47	0	0	45	16	26.23	-	-	-	A	42935837	G	A	42935837	2	1	485	1	0	0	0	0	0	0	0	1	5945	933	33	2		2	FITM2	20	42935837	Silent	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	40299763	42935837	20089683	37	44460										
LARGE	0	genome.wustl.edu	37	chr22	33670562	33670562	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	aatgtcgaagctgggggcatGaggcatgtggatcatgtagg	17	5	1	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	22	33670562	33670562	G	A	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.2122	p.H708Y	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	185	0	0	104	74	41.57	-	-	-	A	33670562	G	A	33670562	3	1	485	1	0	0	0	0	1	0	0	0	8681	1290	45	2	152	2	LARGE	22	33670562	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09		33670562	17634004	38	44461										
HUWE1	0	genome.wustl.edu	37	chrX	53589797	53589797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	cctcggcactctcaccttctCggttggcctgcaaggtggaa	11	14	2	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	X	53589797	53589797	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.7199	p.R2400Q	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	132	0	0	97	30	23.62	-	-	-	T	53589797	C	T	53589797	3	4	485	1	0	0	0	0	1	0	0	0	7515	884	31	1	6053	1	HUWE1	23	53589797	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09		53589797	101680763	39	44462										
ATRX	0	genome.wustl.edu	37	chrX	76813032	76813032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ctcattcatagtaaaatgacGctccacctgctgctgatcaa	6	12	3	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	X	76813032	76813032	G	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.6589	p.R2197C	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	260	0	0	144	52	26.53	-	-	-	A	76813032	G	A	76813032	3	1	485	1	0	0	0	0	1	0	0	0	1212	1087	38	1	913	1	ATRX	23	76813032	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	23223235	76813032	78457528	40	44463										
NXF5	0	genome.wustl.edu	37	chrX	101097746	101097746	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	ccatttcctcatgttttcatCttgtgtgttccgcctcattt	5	12	4	0			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	X	101097746	101097746	C	G	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.19	p.D7H	0.000	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	616	1	0.16	384	137	26.3	-	-	-	G	101097746	C	G	101097746	3	3	485	1	0	0	0	0	1	0	0	0	10859	913	32	2	1134	2	NXF5	23	101097746	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	24284714	101097746	54172814	41	44464										
RAB33A	0	genome.wustl.edu	37	chrX	129318409	129318409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	tgtggatccaagaatgcaatGggcatgctgtgcccccacta	11	11	0	1			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	X	129318409	129318409	G	A	SNP	RAB33A	ENST00000257017	human	ensembl	69_37n	1	known	missense	c.409	p.G137R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594	96	0	0	99	26	20.8	-	-	-	A	129318409	G	A	129318409	3	1	485	1	0	0	0	0	1	0	0	0	13005	1348	47	4	415	4	RAB33A	23	129318409	Missense_Mutation	SNP	G	TCGA-BH-A0B0-01A-21D-A10Y-09	28220663	129318409	25952151	42	44465										
RAB39B	0	genome.wustl.edu	37	chrX	154490356	154490356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.558139534883721	24	4.93009666102842e-09	3.82316090925362	5.05203405865658	3.5364238410596	0.00190705849201035	0.0414467378930249	18	gcctctgtgtatccaggtcaCacttgtgacccaccagaaca	8	14	2	2			TCGA-BH-A0B0-01A-21D-A10Y-09	TCGA-BH-A0B0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4680fd93-33c8-4aee-942b-5c616acd02cf	fc9e6937-9af0-4ecb-983c-510ce060bb0e	X	154490356	154490356	C	T	SNP	RAB39B	ENST00000369454	human	ensembl	69_37n	-1	known	missense	c.374	p.C125Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961	150	0	0	111	48	30.19	-	-	-	T	154490356	C	T	154490356	3	4	485	1	0	0	0	0	1	0	0	0	13013	478	17	4	271	4	RAB39B	23	154490356	Missense_Mutation	SNP	C	TCGA-BH-A0B0-01A-21D-A10Y-09	25171947	154490356	780204	43	44466										
TMEM48	0	genome.wustl.edu	37	chr1	54293701	54293701	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ccagtgcagggaaccacaagAaagctgtactggccctgggt	13	11	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	54293701	54293701	A	C	SNP	TMEM48	ENST00000371429	human	ensembl	69_37n	-1	known	missense	c.426	p.F142L	0.166	pfam_Nucleoporin_prot_Ndc1/Nup	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	TMEM48	HGNC	ENSG00000058804	176	0	0	79	20	20.2	-	-	-	C	54293701	A	C	54293701	3	2	486	1	0	0	0	0	1	0	0	0	16267	243	9	5	1658	5	TMEM48	1	54293701	Missense_Mutation	SNP	A	TCGA-BH-A0B1-01A-12W-A071-09		54293701	194956920	1	44467										
KIAA0907	0	genome.wustl.edu	37	chr1	155886454	155886454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ttgcctgaggaacttgctggCttcgatcctgcaccttcaat	9	12	1	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	155886454	155886454	C	T	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	silent	c.1515	p.K505	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	260	0	0	201	82	28.87	-	-	-	T	155886454	C	T	155886454	2	4	486	1	0	0	0	0	0	0	0	1	8251	796	28	4		4	KIAA0907	1	155886454	Silent	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	101592753	155886454	93364167	2	44468										
RAB25	0	genome.wustl.edu	37	chr1	156038083	156038083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	actatcgtggtgcagtggggGccctcctggtgtttgaccta	14	10	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	156038083	156038083	G	A	SNP	RAB25	ENST00000361084	human	ensembl	69_37n	1	known	missense	c.262	p.A88T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB25	HGNC	ENSG00000132698	213	0	0	357	59	14.15	-	-	-	A	156038083	G	A	156038083	3	1	486	1	0	0	0	0	1	0	0	0	12995	1203	42	4	272	4	RAB25	1	156038083	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	151629	156038083	93212538	3	44469										
POLR1A	0	genome.wustl.edu	37	chr2	86258493	86258493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cggtgtcgtactggtagtcaTctatgaacgggtggatctca	13	8	3	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	86258493	86258493	T	C	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.4538	p.D1513G	0.983	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	281	1	0.35	153	39	20.31	-	-	-	C	86258493	T	C	86258493	3	2	486	1	0	0	0	0	1	0	0	0	12283	1435	50	5	644	5	POLR1A	2	86258493	Missense_Mutation	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09		86258493	156940880	4	44470										
HSPD1	0	genome.wustl.edu	37	chr2	198352668	198352668	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	aacttctgaggaactttgcaTaattttctcaactatcaaag	5	8	3	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	198352668	198352668	T	G	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	missense	c.1483	p.M495L	0.632	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	57	0	0	46	10	17.86	-	-	-	G	198352668	T	G	198352668	3	3	486	1	0	0	0	0	1	0	0	0	7482	1406	49	5	246	5	HSPD1	2	198352668	Missense_Mutation	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09	112094175	198352668	44846705	5	44471										
ABCA12	0	genome.wustl.edu	37	chr2	215813332	215813332	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gtactcacttctttaatatcCttttctggaattccatgtac	4	10	3	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	215813332	215813332	C	G	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.7092	p.K2364N	0.823	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	233	0	0	108	25	18.8	-	-	-	G	215813332	C	G	215813332	3	3	486	1	0	0	0	0	1	0	0	0	30	680	24	4	723	4	ABCA12	2	215813332	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	17460664	215813332	27386041	6	44472										
SPEG	0	genome.wustl.edu	37	chr2	220312900	220312901	+	Frame_Shift_Ins	INS	-	-	C													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cgccccaccgtcgcactcagINSgagcctgtgctgcccgagga							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	220312900	220312901	-	C	INS	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1020_1021	p.E340fs	0.813:0.864	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	14	0	0	1	2	66.67	-	-	-	C	220312901	-	C	220312900	7	5	486	1	0	1	1	0	0	0	0	0	15127	991	35	0	1034	0	SPEG	2	220312900	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	4499568	220312900	22886473	7	44473										
TATDN2	0	genome.wustl.edu	37	chr3	10301826	10301826	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ttttttttttcccaggttgaTtccaaagatagttctcataa	5	7	1	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	3	10301826	10301826	T	C	SNP	TATDN2	ENST00000287652	human	ensembl	69_37n	1	known	silent	c.420	p.D140	1.000	NULL	pfam_TatD_superfamily	-	no_errors	TATDN2	HGNC	ENSG00000157014	196	1	0.51	110	87	44.16	-	-	-	C	10301826	T	C	10301826	2	2	486	1	0	0	0	0	0	0	0	1	15684	1490	52	5		5	TATDN2	3	10301826	Silent	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09		10301826	187720604	8	44474										
OR5K2	0	genome.wustl.edu	37	chr3	98216663	98216663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tggggaatattagtttggtgGcactgatatttacacactgt	11	5	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	3	98216663	98216663	G	A	SNP	OR5K2	ENST00000427338	human	ensembl	69_37n	1	known	missense	c.139	p.A47T	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861	476	0	0	216	100	31.55	-	-	-	A	98216663	G	A	98216663	3	1	486	1	0	0	0	0	1	0	0	0	11240	1203	42	4	141	4	OR5K2	3	98216663	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	87914837	98216663	99805767	9	44475										
GPR125	0	genome.wustl.edu	37	chr4	22390729	22390729	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	actagggtgcgtttggccgaCtgccgtaattcttaatgttc	11	9	1	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	22390729	22390729	C	A	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2705	p.S902I	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	829	0	0	417	88	17.39	-	-	-	A	22390729	C	A	22390729	3	1	486	1	0	0	0	0	1	0	0	0	6689	565	20	4	1268	4	GPR125	4	22390729	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09		22390729	168763547	10	44476										
FIP1L1	0	genome.wustl.edu	37	chr4	54319224	54319224	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	acagagagcgagaccgtgatCgggacagagaaagagaacgc	15	8	0	5			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	54319224	54319224	C	A	SNP	FIP1L1	ENST00000337488	human	ensembl	69_37n	1	known	silent	c.1423	p.R475	0.990	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	202	0	0	99	42	29.79	-	-	-	A	54319224	C	A	54319224	2	1	486	1	0	0	0	0	0	0	0	1	5942	875	31	3		3	FIP1L1	4	54319224	Silent	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	31928495	54319224	136835052	11	44477										
TIGD2	0	genome.wustl.edu	37	chr4	90035623	90035623	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	aacaacaagatgacatgcttCtgtctgataaattggtatta	7	6	2	3			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	90035623	90035623	C	A	SNP	TIGD2	ENST00000317005	human	ensembl	69_37n	1	known	missense	c.1498	p.L500M	0.998	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD2	HGNC	ENSG00000180346	216	0	0	125	16	11.35	-	-	-	A	90035623	C	A	90035623	3	1	486	1	0	0	0	0	1	0	0	0	15991	912	32	2	1500	2	TIGD2	4	90035623	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	35716399	90035623	101118653	12	44478										
SEC24B	0	genome.wustl.edu	37	chr4	110442693	110442693	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	taatgtctccaacaggtggcCgtgtgtctgtatttcagaca	10	9	3	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	110442693	110442693	C	G	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.2419	p.R807G	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	81	0	0	54	12	18.18	-	-	-	G	110442693	C	G	110442693	3	3	486	1	0	0	0	0	1	0	0	0	14083	652	23	3	2473	3	SEC24B	4	110442693	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	20407070	110442693	80711583	13	44479										
GUCY1A3	0	genome.wustl.edu	37	chr4	156618138	156618138	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	agcaggaagctcagagagctGcaaagcaaccgtgcccatct	11	12	2	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	156618138	156618138	G	T	SNP	GUCY1A3	ENST00000296518	human	ensembl	69_37n	1	known	missense	c.119	p.C40F	0.000	NULL	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116	167	0	0	82	18	18	-	-	-	T	156618138	G	T	156618138	3	4	486	1	0	0	0	0	1	0	0	0	6945	1319	46	4	121	4	GUCY1A3	4	156618138	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	46175445	156618138	34536138	14	44480										
ITGA2	0	genome.wustl.edu	37	chr5	52382807	52382807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gttccagacagtacagctaaCggcagctgcagaaatcaaca	9	11	1	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	52382807	52382807	C	T	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	missense	c.3284	p.T1095M	0.380	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	88	0	0	39	8	17.02	-	-	-	T	52382807	C	T	52382807	3	4	486	1	0	0	0	0	1	0	0	0	7929	536	19	1	3394	1	ITGA2	5	52382807	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09		52382807	128532453	15	44481										
PCDHA5	0	genome.wustl.edu	37	chr5	140202966	140202966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tgctgcagttccaggtgagcGcgcgcgacgcgggcgtgccg	18	13	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	140202966	140202966	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.1606	p.A536T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	67	0	0	41	13	24.07	-	-	-	A	140202966	G	A	140202966	3	1	486	1	0	0	0	0	1	0	0	0	11600	1087	38	1	1608	1	PCDHA5	5	140202966	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	87820159	140202966	40712294	16	44482										
GABRA1	0	genome.wustl.edu	37	chr5	161281210	161281210	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	aacttaaagacaataccactGtcttcaccaggattttggac	6	10	2	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	161281210	161281210	G	A	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	missense	c.121	p.V41I	1.000	superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	158	0	0	123	16	11.51	-	-	-	A	161281210	G	A	161281210	3	1	486	1	0	0	0	0	1	0	0	0	6209	1377	48	4	127	4	GABRA1	5	161281210	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	21078244	161281210	19634050	17	44483										
C6orf10	0	genome.wustl.edu	37	chr6	32298378	32298378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gtacttaccattggatccagGatattgtactaaaaaataga	7	6	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	6	32298378	32298378	G	T	SNP	C6orf10	ENST00000447241	human	ensembl	69_37n	-1	known	missense	c.502	p.P168T	0.979	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	94	0	0	61	12	16.44	-	-	-	T	32298378	G	T	32298378	3	4	486	1	0	0	0	0	1	0	0	0	2338	1189	41	2		2	C6orf10	6	32298378	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		32298378	138816689	18	44484										
HEATR2	0	genome.wustl.edu	37	chr7	810169	810169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ctgagggcctgtctgcagccCtcccaagacccgcagatgcg	12	16	1	3			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	810169	810169	C	T	SNP	HEATR2	ENST00000440747	human	ensembl	69_37n	1	novel	missense	c.1249	p.L417F	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR2	HGNC	ENSG00000164818	25	0	0	16	11	40.74	-	-	-	T	810169	C	T	810169	3	4	486	1	0	0	0	0	1	0	0	0	7079	668	24	4	1879	4	HEATR2	7	810169	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09		810169	158328494	19	44485										
LIMK1	0	genome.wustl.edu	37	chr7	73520549	73520549	+	Missense_Mutation	SNP	G	G	T													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tcccagcggggaggcgggcaGctctgcccggcagaaacctg							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	73520549	73520549	G	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	missense	c.857	p.S286I	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	73	0	0	48	16	25	-	-	-	T	73520549	G	T	73520549	3	4	486	1	0	0	0	0	1	0	0	0	8856	971	34	4	883	4	LIMK1	7	73520549	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	72710380	73520549	85618114	20	44486	360	2								
LIMK1	0	genome.wustl.edu	37	chr7	73520550	73520550	+	Missense_Mutation	SNP	C	C	G													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cccagcggggaggcgggcagCtctgcccggcagaaacctgt							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	73520550	73520550	C	G	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	missense	c.858	p.S286R	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	74	0	0	49	12	19.35	-	-	-	G	73520550	C	G	73520550	3	3	486	1	0	0	0	0	1	0	0	0	8856	796	28	4	884	4	LIMK1	7	73520550	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	1	73520550	85618113	21	44487	360	2								
TFPI2	0	genome.wustl.edu	37	chr7	93518420	93518420	+	Frame_Shift_Del	DEL	C	C	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tcaatccggttccggtgacaCccaccggaaaagaatttttc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	93518420	93518420	C	-	DEL	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	frame_shift_del	c.387	p.C130fs	0.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	297	0	0	131	28	17.61	-	-	-	-	93518420	C	-	93518420	7	5	486	1	0	1	0	1	0	0	0	0	15904	494	18	0	332	0	TFPI2	7	93518420	Frame_Shift_Del	DEL	C	TCGA-BH-A0B1-01A-12W-A071-09	19997870	93518420	65620243	22	44488										
RBM33	0	genome.wustl.edu	37	chr7	155493674	155493674	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gtctcccatcctcctttactCtcatttcaacttcctccata	1	17	3	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	155493674	155493674	C	G	SNP	RBM33	ENST00000287912	human	ensembl	69_37n	1	known	missense	c.775	p.L259V	0.001	NULL	NULL	-	no_errors	RBM33	HGNC	ENSG00000184863	48	0	0	28	6	17.65	-	-	-	G	155493674	C	G	155493674	3	3	486	1	0	0	0	0	1	0	0	0	13213	928	32	2		2	RBM33	7	155493674	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	61975254	155493674	3644989	23	44489										
DENND3	0	genome.wustl.edu	37	chr8	142161880	142161880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	agatgctggatttcgtcatgGcccccacgtccttcctgatg	10	13	1	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	8	142161880	142161880	G	A	SNP	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	missense	c.778	p.A260T	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	198	0	0	214	60	21.74	-	-	-	A	142161880	G	A	142161880	3	1	486	1	0	0	0	0	1	0	0	0	4468	1203	42	4	800	4	DENND3	8	142161880	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		142161880	4202142	24	44490										
IFNA7	0	genome.wustl.edu	37	chr9	21201826	21201826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tccaggtcattcagttgctgGtaaagttcagtggaaaattt	10	6	3	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	21201826	21201826	G	T	SNP	IFNA7	ENST00000239347	human	ensembl	69_37n	-1	known	nonsense	c.339	p.Y113*	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA7	HGNC	ENSG00000214042	718	0	0	474	75	13.66	-	-	-	T	21201826	G	T	21201826	4	4	486	1	0	0	0	0	0	1	0	0	7596	1256	44	4	234	4	IFNA7	9	21201826	Nonsense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		21201826	120011605	25	44491										
TRPM6	0	genome.wustl.edu	37	chr9	77423061	77423061	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	actaatccaatgtcaatcaaGgttattcggtagcctgaaag	8	8	2	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	77423061	77423061	G	T	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	silent	c.1527	p.T509	0.013	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	175	0	0	54	28	34.15	-	-	-	T	77423061	G	T	77423061	2	4	486	1	0	0	0	0	0	0	0	1	16686	987	35	4		4	TRPM6	9	77423061	Silent	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	56221235	77423061	63790370	26	44492										
STRBP	0	genome.wustl.edu	37	chr9	125923337	125923337	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	aagtccggaggatctttcatCgaaacattttctaacagtaa	7	8	3	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	125923337	125923337	C	T	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	silent	c.546	p.S182	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	81	0	0	19	14	42.42	-	-	-	T	125923337	C	T	125923337	2	4	486	1	0	0	0	0	0	0	0	1	15418	871	31	1		1	STRBP	9	125923337	Silent	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	48500276	125923337	15290094	27	44493										
SARDH	0	genome.wustl.edu	37	chr9	136594964	136594964	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gaccttgactccagccatccGgcccacagcacttgcccaca	7	19	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	136594964	136594964	G	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.838	p.R280	0.661	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	89	0	0	79	14	15.05	-	-	-	T	136594964	G	T	136594964	2	4	486	1	0	0	0	0	0	0	0	1	13928	1115	39	3		3	SARDH	9	136594964	Silent	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	10671627	136594964	4618467	28	44494										
PRKCQ	0	genome.wustl.edu	37	chr10	6557003	6557004	+	In_Frame_Ins	INS	-	-	TTT													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ttcgacatactctttgacgaINSgcacagcacagtaagggtta							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	10	6557003	6557004	-	TTT	INS	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	in_frame_ins	c.95_94	p.L32in_frame_insQI	0.985:0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	268	0	0	107	50	31.85	-	-	-	TTT	6557004	-	TTT	6557003	7	5	486	1	0	1	1	0	0	0	0	0	12596	304	11	0	2093	0	PRKCQ	10	6557003	In_Frame_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09		6557003	128977744	29	44495	361	3								
PRKCQ	0	genome.wustl.edu	37	chr10	6557004	6557005	+	Frame_Shift_Ins	INS	-	-	C													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tcgacatactctttgacgagINScacagcacagtaagggttaa							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	10	6557004	6557005	-	C	INS	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	frame_shift_ins	c.94_93	p.L31fs	0.997:1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	263	0	0	96	50	34.25	-	-	-	C	6557005	-	C	6557004	7	5	486	1	0	1	1	0	0	0	0	0	12596	971	34	0	2094	0	PRKCQ	10	6557004	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	1	6557004	128977743	30	44496	361	3								
PRKCQ	0	genome.wustl.edu	37	chr10	6557011	6557012	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	actctttgacgagcacagcaINScagtaagggttaacagcctc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	10	6557011	6557012	-	G	INS	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	frame_shift_ins	c.87_86	p.A30fs	0.661:1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	258	0	0	95	50	34.48	-	-	-	G	6557012	-	G	6557011	7	5	486	1	0	1	1	0	0	0	0	0	12596	157	6	0	2101	0	PRKCQ	10	6557011	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	7	6557011	128977736	31	44497	361	3								
ITGB1	0	genome.wustl.edu	37	chr10	33217124	33217124	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cattgagtaagacaggtccaTaaggtagtagaggtcaatgg	13	5	1	3			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	10	33217124	33217124	T	G	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	missense	c.445	p.M149L	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	347	0	0	137	55	28.65	-	-	-	G	33217124	T	G	33217124	3	3	486	1	0	0	0	0	1	0	0	0	7944	1406	49	5	2237	5	ITGB1	10	33217124	Missense_Mutation	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09	26660113	33217124	102317623	32	44498										
ART5	0	genome.wustl.edu	37	chr11	3661041	3661043	+	In_Frame_Del	DEL	AAA	AAA	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	aaggcctgtataggggccccAaagcaagttgttagagagaa							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	3661041	3661043	AAA	-	DEL	ART5	ENST00000359918	human	ensembl	69_37n	-1	known	in_frame_del	c.618_616	p.F206in_frame_del	1.000:1.000:1.000	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311	161	0	0	81	42	34.15	-	-	-	-	3661043	AAA	-	3661041	7	5	486	1	0	1	0	1	0	0	0	0	1004	127	5	0	269	0	ART5	11	3661041	In_Frame_Del	DEL	AAA	TCGA-BH-A0B1-01A-12W-A071-09		3661041	131345475	33	44499										
TRAF6	0	genome.wustl.edu	37	chr11	36518753	36518753	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gtgaatattaatatggaattTttggaagggacgctggcatt	12	3	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	36518753	36518753	T	C	SNP	TRAF6	ENST00000348124	human	ensembl	69_37n	-1	known	missense	c.511	p.K171E	0.987	pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104	108	0	0	86	34	28.33	-	-	-	C	36518753	T	C	36518753	3	2	486	1	0	0	0	0	1	0	0	0	16541	1850	64	5	1073	5	TRAF6	11	36518753	Missense_Mutation	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09	32857712	36518753	98487763	34	44500										
OR4C12	0	genome.wustl.edu	37	chr11	50003457	50003457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tgttcacagcaacaaagagaCcaagggtatgagtgtctatg	11	7	2	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	50003457	50003457	C	T	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	missense	c.581	p.G194D	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	625	0	0	194	58	23.02	-	-	-	T	50003457	C	T	50003457	3	4	486	1	0	0	0	0	1	0	0	0	11119	507	18	4	352	4	OR4C12	11	50003457	Missense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	13484704	50003457	85003059	35	44501										
ARHGEF17	0	genome.wustl.edu	37	chr11	73064010	73064010	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	agcaggttcggcactgcatgCagacctggcatgcccagcag	13	13	0	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	73064010	73064010	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	nonsense	c.3406	p.Q1136*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	43	0	0	21	5	19.23	-	-	-	T	73064010	C	T	73064010	4	4	486	1	0	0	0	0	0	1	0	0	902	711	25	4	3416	4	ARHGEF17	11	73064010	Nonsense_Mutation	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09	23060553	73064010	61942506	36	44502										
GRIN2B	0	genome.wustl.edu	37	chr12	13722814	13722814	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ccacctggcgcttccacccaGaatctttttggatggcaatg	9	13	1	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	12	13722814	13722814	G	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.2309	p.S770F	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	135	0	0	124	27	17.76	-	-	-	A	13722814	G	A	13722814	3	1	486	1	0	0	0	0	1	0	0	0	6831	942	33	2	2157	2	GRIN2B	12	13722814	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		13722814	120129081	37	44503										
RPH3A	0	genome.wustl.edu	37	chr12	113314581	113314581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gaccctattcccaagcatctGcagctgccccccagcctgct	7	19	1	0			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	12	113314581	113314581	G	T	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.1081	p.A361S	0.920	NULL	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	50	0	0	33	5	13.16	-	-	-	T	113314581	G	T	113314581	3	4	486	1	0	0	0	0	1	0	0	0	13637	1319	46	4	1123	4	RPH3A	12	113314581	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	99591767	113314581	20537314	38	44504										
KCNK13	0	genome.wustl.edu	37	chr14	90651284	90651285	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cccgggacaatgaattctcaINSgggggggtgggagcctttgc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	14	90651284	90651285	-	G	INS	KCNK13	ENST00000282146	human	ensembl	69_37n	1	known	frame_shift_ins	c.1164_1165	p.V390fs	0.587:1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315	57	0	0	36	4	10	-	-	-	G	90651285	-	G	90651284	7	5	486	1	0	1	1	0	0	0	0	0	8115	175	7	0	1170	0	KCNK13	14	90651284	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09		90651284	16698256	39	44505										
RASGRP1	0	genome.wustl.edu	37	chr15	38805032	38805032	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	acttctgctcggagctgcggCgtggggcggctgagaaccat	16	11	1	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	38805032	38805032	C	T	SNP	RASGRP1	ENST00000310803	human	ensembl	69_37n	-1	known	silent	c.801	p.T267	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP1	HGNC	ENSG00000172575	49	0	0	46	8	14.81	-	-	-	T	38805032	C	T	38805032	2	4	486	1	0	0	0	0	0	0	0	1	13157	755	27	1		1	RASGRP1	15	38805032	Silent	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09		38805032	63726360	40	44506										
MAP1A	0	genome.wustl.edu	37	chr15	43818899	43818899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tgagcaagaagtacccctgcGggaacacgcaacccggagcc	12	14	0	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	43818899	43818899	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.5228	p.R1743Q	0.478	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	156	0	0	125	46	26.9	-	-	-	A	43818899	G	A	43818899	3	1	486	1	0	0	0	0	1	0	0	0	9298	1116	39	1	5230	1	MAP1A	15	43818899	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	5013867	43818899	58712493	41	44507										
TPM1	0	genome.wustl.edu	37	chr15	63336291	63336291	+	Frame_Shift_Del	DEL	C	C	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gaagatgaactggacaaataCtctgaggctctcaaagatgc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	63336291	63336291	C	-	DEL	TPM1	ENST00000288398	human	ensembl	69_37n	1	known	frame_shift_del	c.180	p.S61fs	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416	72	0	0	23	10	29.41	-	-	-	-	63336291	C	-	63336291	7	5	486	1	0	1	0	1	0	0	0	0	16501	576	20	0	316	0	TPM1	15	63336291	Frame_Shift_Del	DEL	C	TCGA-BH-A0B1-01A-12W-A071-09	19517392	63336291	39195101	42	44508										
VAC14	0	genome.wustl.edu	37	chr16	70834801	70834802	+	Frame_Shift_Del	DEL	CA	CA	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gcgaaatccttctcggggttCatggtggcagctgggggaac							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	16	70834801	70834802	CA	-	DEL	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	frame_shift_del	c.3_2	p.M1fs	1.000:1.000	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	18	0	0	5	6	50	-	-	-	-	70834802	CA	-	70834801	7	5	486	1	0	1	0	1	0	0	0	0	17208	826	29	0	2421	0	VAC14	16	70834801	Frame_Shift_Del	DEL	CA	TCGA-BH-A0B1-01A-12W-A071-09		70834801	19519952	43	44509										
BCAR1	0	genome.wustl.edu	37	chr16	75263772	75263773	+	Frame_Shift_Ins	INS	-	-	T													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tggtcaggttggcctcacacINStgctccaggtagaagagcag							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	16	75263772	75263773	-	T	INS	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2388_2387	p.C797fs	1.000:1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	27	0	0	4	2	33.33	-	-	-	T	75263773	-	T	75263772	7	5	486	1	0	1	1	0	0	0	0	0	1352	564	20	0	366	0	BCAR1	16	75263772	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	4428971	75263772	15090981	44	44510	362	2								
BCAR1	0	genome.wustl.edu	37	chr16	75263776	75263776	+	Frame_Shift_Del	DEL	T	T	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tcaggttggcctcacactgcTccaggtagaagagcagcagc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	16	75263776	75263776	T	-	DEL	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	frame_shift_del	c.2384	p.E795fs	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	26	0	0	4	2	33.33	-	-	-	-	75263776	T	-	75263776	7	5	486	1	0	1	0	1	0	0	0	0	1352	1551	54	0	370	0	BCAR1	16	75263776	Frame_Shift_Del	DEL	T	TCGA-BH-A0B1-01A-12W-A071-09	4	75263776	15090977	45	44511	362	2								
B4GALNT2	0	genome.wustl.edu	37	chr17	47236488	47236488	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	agaggccagaagcagctgatCatttctaccagtgaccggaa	11	10	2	4			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	17	47236488	47236488	C	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	silent	c.768	p.I256	0.917	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	492	1	0.2	431	89	17.08	-	-	-	A	47236488	C	A	47236488	2	1	486	1	0	0	0	0	0	0	0	1	1271	816	29	2		2	B4GALNT2	17	47236488	Silent	SNP	C	TCGA-BH-A0B1-01A-12W-A071-09		47236488	33958722	46	44512										
MAPK4	0	genome.wustl.edu	37	chr18	48190626	48190626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gtgagctgttcaagttcagcGtggcgtacatcgtccaggag	14	9	2	1			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	18	48190626	48190626	G	A	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.298	p.V100M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	200	0	0	57	68	53.97	-	-	-	A	48190626	G	A	48190626	3	1	486	1	0	0	0	0	1	0	0	0	9351	1145	40	1	300	1	MAPK4	18	48190626	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		48190626	29886622	47	44513										
SERPINB7	0	genome.wustl.edu	37	chr18	61463607	61463607	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	attaataagtgggttgaaaaTgaaacacatggtgagtattg	11	2	0	3			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	18	61463607	61463607	T	C	SNP	SERPINB7	ENST00000336429	human	ensembl	69_37n	1	known	silent	c.444	p.N148	0.085	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396	163	0	0	67	9	11.84	-	-	-	C	61463607	T	C	61463607	2	2	486	1	0	0	0	0	0	0	0	1	14194	1461	51	5		5	SERPINB7	18	61463607	Silent	SNP	T	TCGA-BH-A0B1-01A-12W-A071-09	13272981	61463607	16613641	48	44514										
ABCA7	0	genome.wustl.edu	37	chr19	1043354	1043356	+	In_Frame_Del	DEL	TTG	TTG	-													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	ccccgcctgctcggagctgaTtggagccctggacagccacc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	1043354	1043356	TTG	-	DEL	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	in_frame_del	c.812_814	p.IG271in_frame_delR	0.338:0.041:0.030	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	30	0	0	15	22	59.46	-	-	-	-	1043356	TTG	-	1043354	7	5	486	1	0	1	0	1	0	0	0	0	37	1493	52	0	842	0	ABCA7	19	1043354	In_Frame_Del	DEL	TTG	TCGA-BH-A0B1-01A-12W-A071-09		1043354	58085629	49	44515										
LMNB2	0	genome.wustl.edu	37	chr19	2431861	2431862	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cccttccacaccagcgtcgaINSgggggggctgtgggccaccc							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	2431861	2431862	-	G	INS	LMNB2	ENST00000325327	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1630_1629	p.S543fs	0.018:0.000	pfam_Lamin_tail_dom	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	25	0	0	5	3	37.5	-	-	-	G	2431862	-	G	2431861	7	5	486	1	0	1	1	0	0	0	0	0	8906	304	11	0	244	0	LMNB2	19	2431861	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	1388507	2431861	56697122	50	44516										
FBN3	0	genome.wustl.edu	37	chr19	8188382	8188383	+	Frame_Shift_Ins	INS	-	-	C													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	cctgggcatccagggcgaagINSccccccgcacaggcgcagtg							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	8188382	8188383	-	C	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3048_3047	p.F1017fs	1.000:1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	42	0	0	16	3	15.79	-	-	-	C	8188383	-	C	8188382	7	5	486	1	0	1	1	0	0	0	0	0	5750	958	34	0	5545	0	FBN3	19	8188382	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	5756521	8188382	50940601	51	44517										
WDR62	0	genome.wustl.edu	37	chr19	36584983	36584983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gattcactccctgagccctgGagagcaaacagaggatgatc	11	11	1	4			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	36584983	36584983	G	A	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.2384	p.G795E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	165	0	0	97	112	53.59	-	-	-	A	36584983	G	A	36584983	3	1	486	1	0	0	0	0	1	0	0	0	17410	1174	41	2	2462	2	WDR62	19	36584983	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	28396601	36584983	22544000	52	44518										
ZNF227	0	genome.wustl.edu	37	chr19	44738970	44738970	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gttgcaagtgaattaaccagGtgtcttcaggggaagagttc	13	6	2	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	44738970	44738970	G	A	SNP	ZNF227	ENST00000313040	human	ensembl	69_37n	1	known	silent	c.387	p.R129	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115	200	0	0	236	39	14.18	-	-	-	A	44738970	G	A	44738970	2	1	486	1	0	0	0	0	0	0	0	1	17877	1252	44	4		4	ZNF227	19	44738970	Silent	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09	8153987	44738970	14390013	53	44519										
ZC3H4	0	genome.wustl.edu	37	chr19	47570533	47570534	+	Frame_Shift_Ins	INS	-	-	G													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	gattgcagggccgcgggcacINSggggggcactgcgtcctgct							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	47570533	47570534	-	G	INS	ZC3H4	ENST00000253048	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2992_2991	p.V997fs	0.128:0.006	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749	63	0	0	16	2	11.11	-	-	-	G	47570534	-	G	47570533	7	5	486	1	0	1	1	0	0	0	0	0	17666	536	19	0	923	0	ZC3H4	19	47570533	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	2831563	47570533	11558450	54	44520										
PCNT	0	genome.wustl.edu	37	chr21	47754627	47754627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tgaccacacaccagaacagcGtgggatcttcacaatcagtg	9	12	3	2			TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	21	47754627	47754627	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.584	p.R195H	0.008	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	431	1	0.23	221	148	40.11	-	-	-	A	47754627	G	A	47754627	3	1	486	1	0	0	0	0	1	0	0	0	11663	1145	40	1	594	1	PCNT	21	47754627	Missense_Mutation	SNP	G	TCGA-BH-A0B1-01A-12W-A071-09		47754627	375268	55	44521										
CPT1B	0	genome.wustl.edu	37	chr22	51014673	51014674	+	Frame_Shift_Ins	INS	-	-	T													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	caccaggtatttctgcagccINStgggggcagtcttgtcctgg							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	22	51014673	51014674	-	T	INS	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	frame_shift_ins	c.653_652	p.R218fs	0.989:0.743	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	46	0	0	7	7	50	-	-	-	T	51014674	-	T	51014673	7	5	486	1	0	1	1	0	0	0	0	0	3862	681	24	0	1721	0	CPT1B	22	51014673	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09		51014673	289893	56	44522	363	2								
CPT1B	0	genome.wustl.edu	37	chr22	51014680	51014681	+	Frame_Shift_Ins	INS	-	-	T													0.0384615384615385	2	0.994628167771038	0.671957671957672	2.35185185185185	0.391975308641975	1	1	0	tatttctgcagcctgggggcINSagtcttgtcctggaattctt							TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	22	51014680	51014681	-	T	INS	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	frame_shift_ins	c.646_645	p.A215fs	1.000:0.970	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	47	0	0	8	7	46.67	-	-	-	T	51014681	-	T	51014680	7	5	486	1	0	1	1	0	0	0	0	0	3862	710	25	0	1728	0	CPT1B	22	51014680	Frame_Shift_Ins	INS	-	TCGA-BH-A0B1-01A-12W-A071-09	7	51014680	289886	57	44523	363	2								
CSMD2	0	genome.wustl.edu	37	chr1	34042946	34042946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ggtggtagccctgggggtgcCgggtacagatggccatgctg	19	9	0	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	bcb878fe-26c0-462a-83db-a6a586a25534	1	34042946	34042946	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.7526	p.R2509Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	107	0	0	45	36	44.44	-	-	-	T	34042946	C	T	34042946	3	4	487	1	0	0	0	0	1	0	0	0	3977	652	23	1	3011	1	CSMD2	1	34042946	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		34042946	215207675	1	44524										
RLF	0	genome.wustl.edu	37	chr1	40654738	40654738	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	attttgtagaccttattgcaAtatgcaagcaacaagaatgc	7	7	0	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	1	40654738	40654738	A	G	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	silent	c.249	p.Q83	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	40	0	0	65	20	23.53	-	-	-	G	40654738	A	G	40654738	2	3	487	1	0	0	0	0	0	0	0	1	13475	98	4	5		5	RLF	1	40654738	Silent	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	6611792	40654738	208595883	2	44525										
ZEB2	0	genome.wustl.edu	37	chr2	145147116	145147116	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ggagtgatctccagtctcttCttcatctcgtatcgtttcgg	9	11	5	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	2	145147116	145147116	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	missense	c.3547	p.E1183K	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	356	1	0.28	358	85	19.19	-	-	-	T	145147116	C	T	145147116	3	4	487	1	0	0	0	0	1	0	0	0	17720	922	32	2	101	2	ZEB2	2	145147116	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		145147116	98052257	3	44526										
SCN2A	0	genome.wustl.edu	37	chr2	166246050	166246050	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	aggaggtgtctgctattattAtccagagggcttacagacgc	12	8	1	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	2	166246050	166246050	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.5734	p.I1912F	1.000	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	309	0	0	235	64	21.4	-	-	-	T	166246050	A	T	166246050	3	4	487	1	0	0	0	0	1	0	0	0	14004	449	16	5	5932	5	SCN2A	2	166246050	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	21098934	166246050	76953323	4	44527										
SCN7A	0	genome.wustl.edu	37	chr2	167298131	167298131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ttaccaaacagcttcatgccGaatgcagcagaaaagaagat	8	9	1	3			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	2	167298131	167298131	G	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.1932	p.F644L	0.987	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	278	0	0	310	104	25.12	-	-	-	T	167298131	G	T	167298131	3	4	487	1	0	0	0	0	1	0	0	0	14011	1049	37	3	3164	3	SCN7A	2	167298131	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	1052081	167298131	75901242	5	44528										
PRKRA	0	genome.wustl.edu	37	chr2	179300974	179300974	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	aaggaggcttcttttcagtaAgttgatcttttcaccaggag	10	7	4	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	2	179300974	179300974	A	T	SNP	PRKRA	ENST00000325748	human	ensembl	69_37n	-1	known	missense	c.682	p.L228I	0.998	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	PRKRA	HGNC	ENSG00000180228	219	0	0	184	42	18.58	-	-	-	T	179300974	A	T	179300974	3	4	487	1	0	0	0	0	1	0	0	0	12605	69	3	5	267	5	PRKRA	2	179300974	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	12002843	179300974	63898399	6	44529										
SHROOM3	0	genome.wustl.edu	37	chr4	77662080	77662081	+	Frame_Shift_Ins	INS	-	-	T													0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	aatcgcccctgctggatgccINScccttcagccgcgcctaccg							TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	4	77662080	77662081	-	T	INS	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	frame_shift_ins	c.2754_2755	p.P918fs	0.000:0.457	pfam_ASD1	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	24	0	0	6	5	45.45	-	-	-	T	77662081	-	T	77662080	7	5	487	1	0	1	1	0	0	0	0	0	14384	610	22	0	2772	0	SHROOM3	4	77662080	Frame_Shift_Ins	INS	-	TCGA-BH-A0B3-01A-11W-A071-09		77662080	113492196	7	44530										
SNCAIP	0	genome.wustl.edu	37	chr5	121786792	121786792	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gatggccacagcccatctccCacctcagagagcagcgaacc	9	17	2	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	5	121786792	121786792	C	A	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	silent	c.2391	p.P797	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	250	0	0	73	49	40.16	-	-	-	A	121786792	C	A	121786792	2	1	487	1	0	0	0	0	0	0	0	1	14930	581	21	4		4	SNCAIP	5	121786792	Silent	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		121786792	59128468	8	44531										
PCDHGB3	0	genome.wustl.edu	37	chr5	140750987	140750987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gatatttcagatgaaaatgaCaatgccccggagataaccct	8	9	1	4			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	5	140750987	140750987	C	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	missense	c.1026	p.D342E	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	74	0	0	168	35	17.24	-	-	-	A	140750987	C	A	140750987	3	1	487	1	0	0	0	0	1	0	0	0	11637	477	17	4	1028	4	PCDHGB3	5	140750987	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09	18964195	140750987	40164273	9	44532										
PCDHGB3	0	genome.wustl.edu	37	chr5	140751317	140751317	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	aacgacaacgttcccgttttCcaccaggcctcctacaccgt	6	17	0	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	5	140751317	140751317	C	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	silent	c.1356	p.F452	0.913	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	134	0	0	308	55	15.15	-	-	-	T	140751317	C	T	140751317	2	4	487	1	0	0	0	0	0	0	0	1	11637	854	30	2		2	PCDHGB3	5	140751317	Silent	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09	330	140751317	40163943	10	44533										
OR2V2	0	genome.wustl.edu	37	chr5	180582416	180582416	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tttgggataatcgatggcttGatccagatggtggtagtaat	13	4	0	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	5	180582416	180582416	G	C	SNP	OR2V2	ENST00000328275	human	ensembl	69_37n	1	known	missense	c.474	p.L158F	0.347	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2V2	HGNC	ENSG00000182613	304	0	0	263	181	40.77	-	-	-	C	180582416	G	C	180582416	3	2	487	1	0	0	0	0	1	0	0	0	11104	1281	45	2	476	2	OR2V2	5	180582416	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	39831099	180582416	332844	11	44534										
ATXN1	0	genome.wustl.edu	37	chr6	16328222	16328222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gggtccctggctgcggggtgGcgtacgcggcaggcagcgtg	21	11	0	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	6	16328222	16328222	G	A	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.320	p.A107V	0.998	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	34	0	0	68	13	16.05	-	-	-	A	16328222	G	A	16328222	3	1	487	1	0	0	0	0	1	0	0	0	1213	1203	42	4	2135	4	ATXN1	6	16328222	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09		16328222	154786845	12	44535										
HIST1H2AD	0	genome.wustl.edu	37	chr6	26199318	26199318	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gtactccaacaccgccgccaGatacactggcgcgccggccc	10	19	0	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	6	26199318	26199318	G	A	SNP	HIST1H2AD	ENST00000341023	human	ensembl	69_37n	-1	known	silent	c.154	p.L52	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866	58	0	0	70	8	10.26	-	-	-	A	26199318	G	A	26199318	2	1	487	1	0	0	0	0	0	0	0	1	7182	933	33	2		2	HIST1H2AD	6	26199318	Silent	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	9871096	26199318	144915749	13	44536										
HSPA1A	0	genome.wustl.edu	37	chr6	31783755	31783755	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tttgacgcgaagcggctgatTggccgcaagttcggcgaccc	14	12	0	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	6	31783755	31783755	T	C	SNP	HSPA1A	ENST00000375651	human	ensembl	69_37n	1	known	silent	c.222	p.I74	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1A	HGNC	ENSG00000204389	9	0	0	11	9	45	-	-	-	C	31783755	T	C	31783755	2	2	487	1	0	0	0	0	0	0	0	1	7461	1800	63	5		5	HSPA1A	6	31783755	Silent	SNP	T	TCGA-BH-A0B3-01A-11W-A071-09	5584437	31783755	139331312	14	44537										
TMEM106B	0	genome.wustl.edu	37	chr7	12258148	12258148	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	agattaaggccaagaagaacGtaagtgattctaagaatatg	10	4	1	5			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	7	12258148	12258148	G	A	SNP	TMEM106B	ENST00000396667	human	ensembl	69_37n	1	known	splice_site	c.281+1	e2+1	1.000	-	-	-	no_errors	TMEM106B	HGNC	ENSG00000106460	101	0	0	123	14	10.22	-	-	-	A	12258148	G	A	12258148	5	1	487	1	0	0	0	0	0	0	1	0	16116	1159	40	1	288	1	TMEM106B	7	12258148	Splice_Site	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09		12258148	146880515	15	44538										
GIMAP8	0	genome.wustl.edu	37	chr7	150164402	150164402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	cctatcatgtgaacttcaaaActgaaggcagcaggtttcaa	8	9	3	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	7	150164402	150164402	A	G	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.616	p.T206A	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	240	1	0.41	189	68	26.46	-	-	-	G	150164402	A	G	150164402	3	3	487	1	0	0	0	0	1	0	0	0	6437	43	2	5	618	5	GIMAP8	7	150164402	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	137906254	150164402	8974261	16	44539										
ABL1	0	genome.wustl.edu	37	chr9	133755477	133755477	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tggcagtggaatccctctgaCcggccctcctttgctgaaat	10	13	1	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	9	133755477	133755477	C	A	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.1503	p.D501E	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	69	0	0	45	34	43.04	-	-	-	A	133755477	C	A	133755477	3	1	487	1	0	0	0	0	1	0	0	0	92	506	18	4	1620	4	ABL1	9	133755477	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		133755477	7457954	17	44540										
SEPHS1	0	genome.wustl.edu	37	chr10	13386865	13386865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	cttggggcactttgcagcctGtgcccttcagttcagtgaat	11	11	2	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	10	13386865	13386865	G	A	SNP	SEPHS1	ENST00000327347	human	ensembl	69_37n	-1	known	missense	c.86	p.T29I	1.000	pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475	118	0	0	56	125	69.06	-	-	-	A	13386865	G	A	13386865	3	1	487	1	0	0	0	0	1	0	0	0	14142	1377	48	4	1124	4	SEPHS1	10	13386865	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09		13386865	122147882	18	44541										
FAT3	0	genome.wustl.edu	37	chr11	92531859	92531859	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tgtttgagactatcttacttCtacctacctatgttggagtg	8	8	2	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	11	92531859	92531859	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.5680	p.L1894	0.833	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	98	0	0	77	14	15.38	-	-	-	T	92531859	C	T	92531859	2	4	487	1	0	0	0	0	0	0	0	1	5737	912	32	2		2	FAT3	11	92531859	Silent	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		92531859	42474657	19	44542										
MMP27	0	genome.wustl.edu	37	chr11	102575447	102575447	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tcatctatgagactcctattCttgctttgaacaagatgatt	6	8	3	4			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	11	102575447	102575447	C	G	SNP	MMP27	ENST00000260229	human	ensembl	69_37n	-1	known	missense	c.162	p.K54N	0.006	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP27	HGNC	ENSG00000137675	169	0	0	101	62	38.04	-	-	-	G	102575447	C	G	102575447	3	3	487	1	0	0	0	0	1	0	0	0	9736	912	32	2	1415	2	MMP27	11	102575447	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09	10043588	102575447	32431069	20	44543										
VWF	0	genome.wustl.edu	37	chr12	6134806	6134806	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ctacaggaggaatccaccatCgtctgcttcatgatgttgtt	9	10	2	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	12	6134806	6134806	C	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.3162	p.T1054	0.587	pirsf_VWF,smart_Unchr_dom_Cys-rich	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	45	0	0	63	10	13.7	-	-	-	A	6134806	C	A	6134806	2	1	487	1	0	0	0	0	0	0	0	1	17343	871	31	3		3	VWF	12	6134806	Silent	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		6134806	127717089	21	44544										
NOS1	0	genome.wustl.edu	37	chr12	117723956	117723956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	cacacagcgcgaggcattccGccaggcgtgcttggccccat	12	16	0	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	bcb878fe-26c0-462a-83db-a6a586a25534	12	117723956	117723956	G	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.1243	p.R415W	0.997	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	80	0	0	47	47	50	-	-	-	A	117723956	G	A	117723956	3	1	487	1	0	0	0	0	1	0	0	0	10613	1086	38	1	3157	1	NOS1	12	117723956	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	111589150	117723956	16127939	22	44545										
MKRN3	0	genome.wustl.edu	37	chr15	23811294	23811294	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	tcgctattcgcacgacctttCtggtcggaagatggccactg	11	12	1	1			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	15	23811294	23811294	C	T	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.365	p.S122F	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	40	0	0	36	26	41.94	-	-	-	T	23811294	C	T	23811294	3	4	487	1	0	0	0	0	1	0	0	0	9679	913	32	2	367	2	MKRN3	15	23811294	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		23811294	78720098	23	44546										
UNC13C	0	genome.wustl.edu	37	chr15	54306670	54306670	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	cagatatcttggaaaagcaaAccacaacccattatgcagat	6	10	1	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	15	54306670	54306670	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.1570	p.T524A	0.934	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	166	0	0	168	26	13.4	-	-	-	G	54306670	A	G	54306670	3	3	487	1	0	0	0	0	1	0	0	0	17083	43	2	5	1572	5	UNC13C	15	54306670	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	30495376	54306670	48224722	24	44547										
TP53	0	genome.wustl.edu	37	chr17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	cggctcatagggcaccaccaCactatgtcgaaaagtgtttc	9	12	1	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	17	7578203	7578203	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	135	1	0.74	56	54	49.09	-	-	-	T	7578203	C	T	7578203	3	4	487	1	0	0	0	0	1	0	0	0	16477	478	17	4	648	4	TP53	17	7578203	Missense_Mutation	SNP	C	TCGA-BH-A0B3-01A-11W-A071-09		7578203	73617007	25	44548										
GPI	0	genome.wustl.edu	37	chr19	34870465	34870465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ttgttgccctgtctactaacAcagtaagtgcccccgtggtc	9	13	1	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	19	34870465	34870465	A	G	SNP	GPI	ENST00000415930	human	ensembl	69_37n	1	known	missense	c.781	p.T261A	1.000	pfam_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220	107	1	0.93	99	15	13.16	-	-	-	G	34870465	A	G	34870465	3	3	487	1	0	0	0	0	1	0	0	0	6661	159	6	5	899	5	GPI	19	34870465	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09		34870465	24258518	26	44549										
LTBP4	0	genome.wustl.edu	37	chr19	41133200	41133201	+	Frame_Shift_Ins	INS	-	-	G													0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ccgctggccctatcggtcccINSgggacacccgccgctccttc							TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	bcb878fe-26c0-462a-83db-a6a586a25534	19	41133200	41133201	-	G	INS	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	frame_shift_ins	c.4504_4505	p.D1503fs	0.993:0.784	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	11	0	0	4	2	33.33	-	-	-	G	41133201	-	G	41133200	7	5	487	1	0	1	1	0	0	0	0	0	9142	643	23	0	4921	0	LTBP4	19	41133200	Frame_Shift_Ins	INS	-	TCGA-BH-A0B3-01A-11W-A071-09	6262735	41133200	17995783	27	44550										
NLRP7	0	genome.wustl.edu	37	chr19	55450913	55450913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ggtggaacacggacatctgcGcccacaggccctgcgcggcc	14	16	1	0			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	19	55450913	55450913	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1358	p.A453V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	38	0	0	61	18	22.5	-	-	-	A	55450913	G	A	55450913	3	1	487	1	0	0	0	0	1	0	0	0	10554	1087	38	1	1871	1	NLRP7	19	55450913	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	14317713	55450913	3678070	28	44551										
TFAP2C	0	genome.wustl.edu	37	chr20	55208476	55208476	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gagctggtgggggccgtaatGaaccccactgaggtcttctg	15	10	2	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	20	55208476	55208476	G	A	SNP	TFAP2C	ENST00000201031	human	ensembl	69_37n	1	known	missense	c.654	p.M218I	0.994	prints_TF_AP2_gamma	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510	70	0	0	65	10	13.33	-	-	-	A	55208476	G	A	55208476	3	1	487	1	0	0	0	0	1	0	0	0	15884	1290	45	2	668	2	TFAP2C	20	55208476	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09		55208476	7817044	29	44552										
DMD	0	genome.wustl.edu	37	chrX	32662397	32662397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	ttgtagaatattaccaacccGgccctgatgggctgtcaaat	9	10	1	2			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	X	32662397	32662397	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.1183	p.R395W	0.989	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	360	1	0.28	88	51	36.69	-	-	-	A	32662397	G	A	32662397	3	1	487	1	0	0	0	0	1	0	0	0	4616	1115	39	1	10393	1	DMD	23	32662397	Missense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09		32662397	122608163	30	44553										
KIF4A	0	genome.wustl.edu	37	chrX	69623828	69623828	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	aacgaaatcattttgccgagAtagagacagagttacaagct	9	7	1	3			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	X	69623828	69623828	A	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.2734	p.I912L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	54	0	0	34	26	43.33	-	-	-	T	69623828	A	T	69623828	3	4	487	1	0	0	0	0	1	0	0	0	8355	333	12	5	2824	5	KIF4A	23	69623828	Missense_Mutation	SNP	A	TCGA-BH-A0B3-01A-11W-A071-09	36961431	69623828	85646732	31	44554										
ZMYM3	0	genome.wustl.edu	37	chrX	70472853	70472854	+	Frame_Shift_Ins	INS	-	-	C													0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gagggggctttatagagcagINScccccccagccccagcaact							TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-11B-21W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	bcb878fe-26c0-462a-83db-a6a586a25534	X	70472853	70472854	-	C	INS	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_ins	c.253_252	p.L84fs	1.000:1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	45	0	0	27	3	10	-	-	-	C	70472854	-	C	70472853	7	5	487	1	0	1	1	0	0	0	0	0	17797	962	34	0	3973	0	ZMYM3	23	70472853	Frame_Shift_Ins	INS	-	TCGA-BH-A0B3-01A-11W-A071-09	849025	70472853	84797707	32	44555										
AFF2	0	genome.wustl.edu	37	chrX	147743942	147743942	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.212121212121212	7	0.0252725350608731	3.03819444444444	6.94444444444444	2.48015873015873	0.314685314685315	0.930327025915261	5	gtggagaagatgctttcaaaGaaatctttcaatccaattca	7	7	4	3			TCGA-BH-A0B3-01A-11W-A071-09	TCGA-BH-A0B3-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8f4504db-45d9-4873-9532-69ad466fdf2f	14a2a9bb-b4d3-4402-81b7-34d2bd314e4b	X	147743942	147743942	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	nonsense	c.694	p.E232*	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	878	0	0	539	89	14.17	-	-	-	T	147743942	G	T	147743942	4	4	487	1	0	0	0	0	0	1	0	0	357	943	33	2	704	2	AFF2	23	147743942	Nonsense_Mutation	SNP	G	TCGA-BH-A0B3-01A-11W-A071-09	77271089	147743942	7526618	33	44556										
SPOCD1	0	genome.wustl.edu	37	chr1	32279706	32279706	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tctgctccatgaatgggcctGagcaggccctgctggcttca	12	13	2	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	1	32279706	32279706	G	A	SNP	SPOCD1	ENST00000360482	human	ensembl	69_37n	-1	known	missense	c.1229	p.S410L	0.314	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668	27	0	0	27	13	32.5	-	-	-	A	32279706	G	A	32279706	3	1	488	1	0	0	0	0	1	0	0	0	15169	1294	45	2	2481	2	SPOCD1	1	32279706	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		32279706	216970915	1	44557										
PTPN22	0	genome.wustl.edu	37	chr1	114372309	114372309	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	atagctagtagaatatgtttCtatagattgggcctgcatac	9	6	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	1	114372309	114372309	C	G	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.2155	p.E719Q	0.042	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	187	0	0	264	37	12.25	-	-	-	G	114372309	C	G	114372309	3	3	488	1	0	0	0	0	1	0	0	0	12870	922	32	2	284	2	PTPN22	1	114372309	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	82092603	114372309	134878312	2	44558										
TCHHL1	0	genome.wustl.edu	37	chr1	152058657	152058657	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cttctcaagtggtgctaaatCttgtgttctttctcttgccc	7	11	4	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	1	152058657	152058657	C	A	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.1501	p.D501Y	0.010	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	657	1	0.15	550	169	23.47	-	-	-	A	152058657	C	A	152058657	3	1	488	1	0	0	0	0	1	0	0	0	15796	913	32	2	1217	2	TCHHL1	1	152058657	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	37686348	152058657	97191964	3	44559										
PEAR1	0	genome.wustl.edu	37	chr1	156874586	156874586	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	actcccgccccttcagcctgCtcccctcagagccctgcgag	8	21	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	1	156874586	156874586	C	G	SNP	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	missense	c.148	p.L50V	0.147	superfamily_Growth_fac_rcpt,pfscan_EMI_domain	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	125	0	0	96	25	20.66	-	-	-	G	156874586	C	G	156874586	3	3	488	1	0	0	0	0	1	0	0	0	11785	797	28	4	154	4	PEAR1	1	156874586	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	4815929	156874586	92376035	4	44560										
ARHGEF4	0	genome.wustl.edu	37	chr2	131688585	131688585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gttgctctcacagtcagaagGcgttccacatggagcctgcc	11	13	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	2	131688585	131688585	G	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	1	known	missense	c.55	p.A19S	0.003	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	142	0	0	102	24	19.05	-	-	-	T	131688585	G	T	131688585	3	4	488	1	0	0	0	0	1	0	0	0	910	1203	42	4	57	4	ARHGEF4	2	131688585	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		131688585	111510788	5	44561										
ICA1L	0	genome.wustl.edu	37	chr2	203653586	203653586	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	agccacatgaaagccaaggtCaaagagttgtgaaggaagga	13	6	1	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	2	203653586	203653586	C	G	SNP	ICA1L	ENST00000358299	human	ensembl	69_37n	-1	known	missense	c.1210	p.D404H	1.000	pfam_Islet_autoAg_Ica1_C	pfam_Islet_autoAg_Ica1_C,pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596	150	1	0.66	162	36	18.18	-	-	-	G	203653586	C	G	203653586	3	3	488	1	0	0	0	0	1	0	0	0	7532	826	29	2	250	2	ICA1L	2	203653586	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	71965001	203653586	39545787	6	44562										
SCN5A	0	genome.wustl.edu	37	chr3	38655318	38655318	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gcccaggtccacaaattcagTtgtgtatctgtaacaaggga	10	9	2	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	38655318	38655318	T	C	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.619	p.T207A	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	23	0	0	12	5	29.41	-	-	-	C	38655318	T	C	38655318	3	2	488	1	0	0	0	0	1	0	0	0	14010	1725	60	5	5523	5	SCN5A	3	38655318	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09		38655318	159367112	7	44563										
CX3CR1	0	genome.wustl.edu	37	chr3	39323136	39323136	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cacccagaagccagagagctCttcctgaaatccaagtctgc	8	14	2	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	39323136	39323136	C	A	SNP	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	missense	c.51	p.K17N	0.245	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	53	0	0	37	6	13.95	-	-	-	A	39323136	C	A	39323136	3	1	488	1	0	0	0	0	1	0	0	0	4106	912	32	2	1120	2	CX3CR1	3	39323136	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	667818	39323136	158699294	8	44564										
KLHL18	0	genome.wustl.edu	37	chr3	47382093	47382093	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cagtcgtgctggatgggcagAtctacgtctgtgggggctac	16	9	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	47382093	47382093	A	T	SNP	KLHL18	ENST00000232766	human	ensembl	69_37n	1	known	missense	c.1153	p.I385F	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648	151	0	0	55	17	23.61	-	-	-	T	47382093	A	T	47382093	3	4	488	1	0	0	0	0	1	0	0	0	8426	333	12	5	1183	5	KLHL18	3	47382093	Missense_Mutation	SNP	A	TCGA-BH-A0B4-01A-11W-A019-09	8058957	47382093	150640337	9	44565										
PLCH1	0	genome.wustl.edu	37	chr3	155199904	155199904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gactttttggtaaccagccaCgagaagtattaggggatcca	11	8	0	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	155199904	155199904	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.3935	p.R1312H	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	166	0	0	119	28	19.05	-	-	-	T	155199904	C	T	155199904	3	4	488	1	0	0	0	0	1	0	0	0	12111	536	19	1	1150	1	PLCH1	3	155199904	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	107817811	155199904	42822526	10	44566										
SI	0	genome.wustl.edu	37	chr3	164764723	164764723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgtctcctaaccaatgcgcaGcatgtcttccagatccagca	7	14	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	164764723	164764723	G	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.1793	p.A598V	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	164	0	0	126	30	19.23	-	-	-	A	164764723	G	A	164764723	3	1	488	1	0	0	0	0	1	0	0	0	14386	971	34	4	3822	4	SI	3	164764723	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	9564819	164764723	33257707	11	44567										
LRRIQ4	0	genome.wustl.edu	37	chr3	169540420	169540420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgccagtgtagccaactgtcGgtgctcgatttatcccacaa	9	12	0	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	3	169540420	169540420	G	A	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	silent	c.711	p.S237	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	106	0	0	180	25	12.14	-	-	-	A	169540420	G	A	169540420	2	1	488	1	0	0	0	0	0	0	0	1	9097	1103	39	1		1	LRRIQ4	3	169540420	Silent	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	4775697	169540420	28482010	12	44568										
SEC31A	0	genome.wustl.edu	37	chr4	83793139	83793139	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gaagtggagaggaagcaaatCgaagatcccacatctggatc	12	8	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	4	83793139	83793139	C	A	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.740	p.R247L	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	96	0	0	85	65	43.33	-	-	-	A	83793139	C	A	83793139	3	1	488	1	0	0	0	0	1	0	0	0	14086	884	31	3	3006	3	SEC31A	4	83793139	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		83793139	107361137	13	44569										
KIAA1109	0	genome.wustl.edu	37	chr4	123159399	123159399	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	acagtagttctagtgctgcaCagcctttgttggctggtgaa	12	8	1	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	4	123159399	123159399	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	nonsense	c.3727	p.Q1243*	0.997	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	151	0	0	178	70	28.23	-	-	-	T	123159399	C	T	123159399	4	4	488	1	0	0	0	0	0	1	0	0	8260	479	17	4	3829	4	KIAA1109	4	123159399	Nonsense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	39366260	123159399	67994877	14	44570										
C5orf42	0	genome.wustl.edu	37	chr5	37157925	37157925	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cacaggtaattcctgtagaaGatcattagcttcaatgtcaa	7	8	3	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	5	37157925	37157925	G	C	SNP	C5orf42	ENST00000274258	human	ensembl	69_37n	-1	known	missense	c.4498	p.L1500V	0.939	NULL	NULL	-	no_errors	C5orf42	HGNC	ENSG00000197603	65	0	0	54	23	29.87	-	-	-	C	37157925	G	C	37157925	3	2	488	1	0	0	0	0	1	0	0	0	2322	957	33	2		2	C5orf42	5	37157925	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		37157925	143757335	15	44571										
ARAP3	0	genome.wustl.edu	37	chr5	141052414	141052415	+	Frame_Shift_Ins	INS	-	-	G													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gcggaggggtcggggtggttINSgggggggccgggggtggccc							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	5	141052414	141052415	-	G	INS	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1172_1171	p.Q391fs	0.039:0.035	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	28	0	0	27	3	10	-	-	-	G	141052415	-	G	141052414	7	5	488	1	0	1	1	0	0	0	0	0	842	1812	63	0	3566	0	ARAP3	5	141052414	Frame_Shift_Ins	INS	-	TCGA-BH-A0B4-01A-11W-A019-09	103894489	141052414	39862846	16	44572										
GEMIN5	0	genome.wustl.edu	37	chr5	154284974	154284974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	taaaatgactttgttattaaTggtgacttttgacttttcaa	6	4	1	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	5	154284974	154284974	T	C	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	missense	c.2458	p.I820V	0.052	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	132	0	0	80	42	34.43	-	-	-	C	154284974	T	C	154284974	3	2	488	1	0	0	0	0	1	0	0	0	6383	1464	51	5	2116	5	GEMIN5	5	154284974	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	13232560	154284974	26630286	17	44573										
FAM153C	0	genome.wustl.edu	37	chr5	177457620	177457620	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgtgcttatagttgttgcctCgaaggtatgtatgttcattt	10	5	1	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	5	177457620	177457620	C	T	SNP	FAM153C	ENST00000511189	human	ensembl	69_37n	1	novel	silent	c.27	p.L9	0.000	NULL	prints_FAM153	-	no_errors	FAM153C	HGNC	ENSG00000204677	75	0	0	85	10	10.53	-	-	-	T	177457620	C	T	177457620	2	4	488	1	0	0	0	0	0	0	0	1	5502	899	31	1		1	FAM153C	5	177457620	Silent	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	23172646	177457620	3457640	18	44574										
HIST1H2BJ	0	genome.wustl.edu	37	chr6	27100194	27100194	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	acggccttagtaccctcggaCacggcgtgcttggccaactc	11	15	0	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	6	27100194	27100194	C	A	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	69_37n	-1	known	silent	c.336	p.V112	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635	128	0	0	93	18	16.22	-	-	-	A	27100194	C	A	27100194	2	1	488	1	0	0	0	0	0	0	0	1	7200	465	17	4		4	HIST1H2BJ	6	27100194	Silent	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		27100194	144014873	19	44575										
SYNE1	0	genome.wustl.edu	37	chr6	152763222	152763222	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gctcctacctggatgcggcgTtcctgcctctcccggctgcg	12	17	1	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	6	152763222	152763222	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.3996	p.E1332	0.933	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	89	0	0	63	23	26.74	-	-	-	C	152763222	T	C	152763222	2	2	488	1	0	0	0	0	0	0	0	1	15537	1722	60	5		5	SYNE1	6	152763222	Silent	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	125663028	152763222	18351845	20	44576										
NFE2L3	0	genome.wustl.edu	37	chr7	26224166	26224167	+	Frame_Shift_Del	DEL	GA	GA	-													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ttttcagggcatctcattggGagatattcctcttccaggca							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	7	26224166	26224167	GA	-	DEL	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	frame_shift_del	c.848_849	p.D284fs	0.960:0.971	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	385	0	0	317	100	23.98	-	-	-	-	26224167	GA	-	26224166	7	5	488	1	0	1	0	1	0	0	0	0	10441	1174	41	0	862	0	NFE2L3	7	26224166	Frame_Shift_Del	DEL	GA	TCGA-BH-A0B4-01A-11W-A019-09		26224166	132914497	21	44577										
TAS2R60	0	genome.wustl.edu	37	chr7	143141397	143141397	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ttctgggtgtgggagtcagtGatttatctgtgtgcagcagt	15	5	3	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	7	143141397	143141397	G	A	SNP	TAS2R60	ENST00000332690	human	ensembl	69_37n	1	known	silent	c.852	p.V284	0.023	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R60	HGNC	ENSG00000185899	427	0	0	365	215	36.94	-	-	-	A	143141397	G	A	143141397	2	1	488	1	0	0	0	0	0	0	0	1	15677	1277	45	2		2	TAS2R60	7	143141397	Silent	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	116917231	143141397	15997266	22	44578										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24259508	24259508	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	atctcagaaaccaaagtgccTgctgcaagcacctattccta	6	13	1	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	8	24259508	24259508	T	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	missense	c.1223	p.L408Q	0.771	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	102	0	0	133	27	16.88	-	-	-	A	24259508	T	A	24259508	3	1	488	1	0	0	0	0	1	0	0	0	254	1580	55	5	1269	5	ADAMDEC1	8	24259508	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09		24259508	122104514	23	44579										
UNC13B	0	genome.wustl.edu	37	chr9	35403592	35403592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ccaagtacaatgagacattcCacttgtaagttacggggggg	12	8	0	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	35403592	35403592	C	T	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.4579	p.H1527Y	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	87	0	0	27	9	25	-	-	-	T	35403592	C	T	35403592	3	4	488	1	0	0	0	0	1	0	0	0	17082	594	21	4	4636	4	UNC13B	9	35403592	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		35403592	105809839	24	44580										
VPS13A	0	genome.wustl.edu	37	chr9	79955428	79955428	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	accatatatcagtggctgaaGaaggaaatgataaatggctc	10	6	1	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	79955428	79955428	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.6988	p.E2330K	1.000	pfam_VPSAP	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	291	0	0	225	33	12.74	-	-	-	A	79955428	G	A	79955428	3	1	488	1	0	0	0	0	1	0	0	0	17286	943	33	2	7186	2	VPS13A	9	79955428	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	44551836	79955428	61258003	25	44581										
FAM22F	0	genome.wustl.edu	37	chr9	97087707	97087707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	agccccttgtggccatggccTagcgttccctggggacacga	13	14	0	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	97087707	97087707	T	C	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.526	p.R176G	0.000	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	33	0	0	22	3	12	-	-	-	C	97087707	T	C	97087707	3	2	488	1	0	0	0	0	1	0	0	0	5587	1521	53	5	1768	5	FAM22F	9	97087707	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	17132279	97087707	44125724	26	44582										
C9orf3	0	genome.wustl.edu	37	chr9	97522520	97522520	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gttggactgctgtgatttatCtgtgttaaaagtcgaggagg	14	4	1	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	97522520	97522520	C	T	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.455	p.S152F	0.998	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	503	0	0	509	108	17.48	-	-	-	T	97522520	C	T	97522520	3	4	488	1	0	0	0	0	1	0	0	0	2502	913	32	2	457	2	C9orf3	9	97522520	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	434813	97522520	43690911	27	44583										
COL15A1	0	genome.wustl.edu	37	chr9	101765816	101765816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	aggccagcagtgtgcccaccGggggaccaaccctctctatg	12	15	1	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	101765816	101765816	G	T	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	missense	c.1147	p.G383W	0.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	60	0	0	61	9	12.86	-	-	-	T	101765816	G	T	101765816	3	4	488	1	0	0	0	0	1	0	0	0	3702	1116	39	3	1177	3	COL15A1	9	101765816	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	4243296	101765816	39447615	28	44584										
AKNA	0	genome.wustl.edu	37	chr9	117120245	117120245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gtgcaaaggcttctgtggaaGgcgctcagagatgccgcttc	14	10	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	9	117120245	117120245	G	A	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.2695	p.L899F	0.145	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	86	0	0	65	17	20.73	-	-	-	A	117120245	G	A	117120245	3	1	488	1	0	0	0	0	1	0	0	0	463	1000	35	4	1668	4	AKNA	9	117120245	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	15354429	117120245	24093186	29	44585										
ZNF25	0	genome.wustl.edu	37	chr10	38241444	38241444	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tcgctgatgtactgtgagggCtgacttctggtagaagcatt	13	7	1	4			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	10	38241444	38241444	C	G	SNP	ZNF25	ENST00000302609	human	ensembl	69_37n	-1	known	missense	c.982	p.A328P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395	131	0	0	199	100	33.33	-	-	-	G	38241444	C	G	38241444	3	3	488	1	0	0	0	0	1	0	0	0	17890	797	28	4	392	4	ZNF25	10	38241444	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		38241444	97293303	30	44586										
SORBS1	0	genome.wustl.edu	37	chr10	97141537	97141537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tcttgtgtctactttcttatCtgggggttcccagtcatttc	8	10	5	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	10	97141537	97141537	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.1558	p.D520N	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	138	0	0	158	55	25.82	-	-	-	T	97141537	C	T	97141537	3	4	488	1	0	0	0	0	1	0	0	0	15016	913	32	2	2448	2	SORBS1	10	97141537	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	58900093	97141537	38393210	31	44587										
USP5	0	genome.wustl.edu	37	chr12	6971685	6971685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ctggtcatccagatcaagaaGttcaccttcggcttagactg	9	11	3	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	6971685	6971685	G	T	SNP	USP5	ENST00000229268	human	ensembl	69_37n	1	known	missense	c.1725	p.K575N	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	123	0	0	84	22	20.75	-	-	-	T	6971685	G	T	6971685	3	4	488	1	0	0	0	0	1	0	0	0	17178	1020	36	4	1779	4	USP5	12	6971685	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		6971685	126880210	32	44588										
LRRC23	0	genome.wustl.edu	37	chr12	7019120	7019120	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	atctcaccaccttgcatcttCgagacaaccagattgacacc	5	15	2	3			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	7019120	7019120	C	T	SNP	LRRC23	ENST00000007969	human	ensembl	69_37n	1	known	nonsense	c.688	p.R230*	0.999	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC23	HGNC	ENSG00000010626	134	1	0.74	106	42	28.38	-	-	-	T	7019120	C	T	7019120	4	4	488	1	0	0	0	0	0	1	0	0	9044	876	31	1	706	1	LRRC23	12	7019120	Nonsense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	47435	7019120	126832775	33	44589										
C12orf57	0	genome.wustl.edu	37	chr12	7053758	7053761	+	Frame_Shift_Del	DEL	GCCA	GCCA	-													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgcaattcgtgctgcccgtgGccacgcagatccagcaggag							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	GCCA	GCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	7053758	7053761	GCCA	-	DEL	C12orf57	ENST00000229281	human	ensembl	69_37n	1	known	frame_shift_del	c.172_175	p.A58fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	C12orf57	HGNC	ENSG00000111678	26	0	0	21	4	16	-	-	-	-	7053761	GCCA	-	7053758	7	5	488	1	0	1	0	1	0	0	0	0	1713	1203	42	0	178	0	C12orf57	12	7053758	Frame_Shift_Del	DEL	GCCA	TCGA-BH-A0B4-01A-11W-A019-09	34638	7053758	126798137	34	44590	364	2								
C12orf57	0	genome.wustl.edu	37	chr12	7053762	7053763	+	Frame_Shift_Ins	INS	-	-	T													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ttcgtgctgcccgtggccacINSgcagatccagcaggaggtta							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	7053762	7053763	-	T	INS	C12orf57	ENST00000229281	human	ensembl	69_37n	1	known	frame_shift_ins	c.176_177	p.Q60fs	1.000:1.000	NULL	NULL	-	no_errors	C12orf57	HGNC	ENSG00000111678	26	0	0	21	4	16	-	-	-	T	7053763	-	T	7053762	7	5	488	1	0	1	1	0	0	0	0	0	1713	536	19	0	182	0	C12orf57	12	7053762	Frame_Shift_Ins	INS	-	TCGA-BH-A0B4-01A-11W-A019-09	4	7053762	126798133	35	44591	364	2								
DENND5B	0	genome.wustl.edu	37	chr12	31542280	31542280	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgttccaaggcaaactaaaaTctggaatttgccatccttcc	6	11	1	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	31542280	31542280	T	A	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.3724	p.I1242F	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	35	0	0	43	9	17.31	-	-	-	A	31542280	T	A	31542280	3	1	488	1	0	0	0	0	1	0	0	0	4473	1435	50	5	213	5	DENND5B	12	31542280	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	24488518	31542280	102309615	36	44592										
ADAMTS20	0	genome.wustl.edu	37	chr12	43837653	43837653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gacgaatgtcaacgtttgttGctcctgcgggaatctttaca	10	9	2	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	43837653	43837653	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.2231	p.A744V	1.000	pfam_ADAM_spacer1	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	220	0	0	154	41	21.03	-	-	-	A	43837653	G	A	43837653	3	1	488	1	0	0	0	0	1	0	0	0	266	1319	46	4	3596	4	ADAMTS20	12	43837653	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	12295373	43837653	90014242	37	44593										
ASB8	0	genome.wustl.edu	37	chr12	48543359	48543359	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	atggtgccatttttcctcaaTtcaaagtgtccaacagctct	6	11	3	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	48543359	48543359	T	G	SNP	ASB8	ENST00000317697	human	ensembl	69_37n	-1	known	missense	c.657	p.E219D	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB8	HGNC	ENSG00000177981	77	0	0	126	16	11.27	-	-	-	G	48543359	T	G	48543359	3	3	488	1	0	0	0	0	1	0	0	0	1033	1490	52	5	213	5	ASB8	12	48543359	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	4705706	48543359	85308536	38	44594										
SP7	0	genome.wustl.edu	37	chr12	53722555	53722555	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gtttatagacatcttggggcAagacatgctggggccctggt	14	8	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	53722555	53722555	A	G	SNP	SP7	ENST00000303846	human	ensembl	69_37n	-1	known	missense	c.671	p.L224S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374	37	0	0	34	9	20.93	-	-	-	G	53722555	A	G	53722555	3	3	488	1	0	0	0	0	1	0	0	0	15058	131	5	5	628	5	SP7	12	53722555	Missense_Mutation	SNP	A	TCGA-BH-A0B4-01A-11W-A019-09	5179196	53722555	80129340	39	44595										
SLC39A5	0	genome.wustl.edu	37	chr12	56625119	56625119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gtgtgtgggtcgtcttgggcTgggtagggggctcagtcccc	19	9	2	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	56625119	56625119	T	C	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	missense	c.61	p.W21R	0.899	NULL	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	81	0	0	80	23	22.33	-	-	-	C	56625119	T	C	56625119	3	2	488	1	0	0	0	0	1	0	0	0	14710	1580	55	5	63	5	SLC39A5	12	56625119	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09	2902564	56625119	77226776	40	44596										
TRAFD1	0	genome.wustl.edu	37	chr12	112580087	112580087	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	atggcggtcccaggtctctcAgtgacataaagggtaggctt	13	9	2	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	12	112580087	112580087	A	T	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.838	p.S280C	0.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	90	0	0	108	32	22.86	-	-	-	T	112580087	A	T	112580087	3	4	488	1	0	0	0	0	1	0	0	0	16543	188	7	5	856	5	TRAFD1	12	112580087	Missense_Mutation	SNP	A	TCGA-BH-A0B4-01A-11W-A019-09	55954968	112580087	21271808	41	44597										
ELF1	0	genome.wustl.edu	37	chr13	41533074	41533074	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gggctcttccacacaggctaGaccggcataactattgagaa	10	11	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	13	41533074	41533074	G	C	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	missense	c.151	p.L51V	0.542	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	102	0	0	47	22	31.43	-	-	-	C	41533074	G	C	41533074	3	2	488	1	0	0	0	0	1	0	0	0	5090	933	33	2	1736	2	ELF1	13	41533074	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		41533074	73636804	42	44598										
SLITRK6	0	genome.wustl.edu	37	chr13	86370546	86370546	+	Missense_Mutation	SNP	G	G	A													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tttcctcacaattgcaaagaGaatcacaagagcctctggat							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	13	86370546	86370546	G	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.98	p.S33F	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	235	1	0.42	191	63	24.8	-	-	-	A	86370546	G	A	86370546	3	1	488	1	0	0	0	0	1	0	0	0	14836	942	33	2	2431	2	SLITRK6	13	86370546	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	44837472	86370546	28799332	43	44599	365	2								
SLITRK6	0	genome.wustl.edu	37	chr13	86370547	86370547	+	Missense_Mutation	SNP	A	A	G													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ttcctcacaattgcaaagagAatcacaagagcctctggatg							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	13	86370547	86370547	A	G	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.97	p.S33P	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	233	0	0	193	61	24.02	-	-	-	G	86370547	A	G	86370547	3	3	488	1	0	0	0	0	1	0	0	0	14836	246	9	5	2432	5	SLITRK6	13	86370547	Missense_Mutation	SNP	A	TCGA-BH-A0B4-01A-11W-A019-09	1	86370547	28799331	44	44600	365	2								
MRPL52	0	genome.wustl.edu	37	chr14	23299300	23299300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gcagcgtagccgcttgggcgGgcggccagtggcgactacag	18	12	0	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	14	23299300	23299300	G	A	SNP	MRPL52	ENST00000355151	human	ensembl	69_37n	1	known	missense	c.70	p.G24S	0.565	NULL	NULL	-	no_errors	MRPL52	HGNC	ENSG00000172590	21	0	0	33	13	28.26	-	-	-	A	23299300	G	A	23299300	3	1	488	1	0	0	0	0	1	0	0	0	9888	1232	43	4	76	4	MRPL52	14	23299300	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		23299300	84050240	45	44601										
BAZ1A	0	genome.wustl.edu	37	chr14	35231037	35231037	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gttttgaagcaatatttacaGatcttgactgttcacttgac	7	7	2	4			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	14	35231037	35231037	G	A	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.4169	p.S1390F	0.002	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	253	0	0	398	84	17.39	-	-	-	A	35231037	G	A	35231037	3	1	488	1	0	0	0	0	1	0	0	0	1333	942	33	2	517	2	BAZ1A	14	35231037	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	11931737	35231037	72118503	46	44602										
UACA	0	genome.wustl.edu	37	chr15	70971994	70971994	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgacttcacatttacttcatCttgcatgtgtgtcaaatttc	5	9	4	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	15	70971994	70971994	C	A	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.844	p.D282Y	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	79	0	0	54	17	23.94	-	-	-	A	70971994	C	A	70971994	3	1	488	1	0	0	0	0	1	0	0	0	16921	913	32	2	3446	2	UACA	15	70971994	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		70971994	31559398	47	44603										
CD19	0	genome.wustl.edu	37	chr16	28944363	28944363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tgtatgtgtgggccaaagacCgccctgagatctgggaggga	16	8	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	16	28944363	28944363	C	T	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	missense	c.487	p.R163C	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	77	0	0	83	13	13.54	-	-	-	T	28944363	C	T	28944363	3	4	488	1	0	0	0	0	1	0	0	0	3002	652	23	1	497	1	CD19	16	28944363	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		28944363	61410390	48	44604										
OVCA2	0	genome.wustl.edu	37	chr17	1946346	1946346	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tggccacttcattccagcagCtgcaccccagcgtcaggcct	9	17	2	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	17	1946346	1946346	C	G	SNP	OVCA2	ENST00000263084	human	ensembl	69_37n	1	known	missense	c.632	p.A211G	0.170	pfam_Serine_hydrolase_FSH	pfam_Serine_hydrolase_FSH,pfam_PLipase/COase/thioEstase	-	no_errors	OVCA2	HGNC	ENSG00000214014	39	0	0	19	19	50	-	-	-	G	1946346	C	G	1946346	3	3	488	1	0	0	0	0	1	0	0	0	11395	797	28	4	638	4	OVCA2	17	1946346	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09		1946346	79248864	49	44605										
CCT6B	0	genome.wustl.edu	37	chr17	33266704	33266704	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gagatcttcaaaagaattcaCggccattccaccacaagcaa	6	12	3	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	17	33266704	33266704	C	G	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.997	p.V333L	0.995	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	188	0	0	203	36	15.06	-	-	-	G	33266704	C	G	33266704	3	3	488	1	0	0	0	0	1	0	0	0	2987	536	19	3	619	3	CCT6B	17	33266704	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	31320358	33266704	47928506	50	44606										
AOC2	0	genome.wustl.edu	37	chr17	41002222	41002222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cctataacttctttgatgagGacccctccatcttctcccct	4	16	3	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	17	41002222	41002222	G	T	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.2128	p.D710Y	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	550	0	0	380	122	24.3	-	-	-	T	41002222	G	T	41002222	3	4	488	1	0	0	0	0	1	0	0	0	728	1174	41	2	2142	2	AOC2	17	41002222	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	7735518	41002222	40192988	51	44607										
AFG3L2	0	genome.wustl.edu	37	chr18	12337422	12337422	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	taagtattcgtacttcatcaTctatcaatcttgcagtggct	6	9	5	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	18	12337422	12337422	T	C	SNP	AFG3L2	ENST00000269143	human	ensembl	69_37n	-1	known	missense	c.2093	p.D698G	1.000	pfam_Peptidase_M41,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385	158	0	0	78	31	28.44	-	-	-	C	12337422	T	C	12337422	3	2	488	1	0	0	0	0	1	0	0	0	360	1435	50	5	308	5	AFG3L2	18	12337422	Missense_Mutation	SNP	T	TCGA-BH-A0B4-01A-11W-A019-09		12337422	65739826	52	44608										
ZNF554	0	genome.wustl.edu	37	chr19	2834359	2834359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gccatctgagaactcatactGgagagaagccctacgggtgc	12	11	2	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	19	2834359	2834359	G	A	SNP	ZNF554	ENST00000317243	human	ensembl	69_37n	1	known	missense	c.1126	p.G376R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006	50	0	0	63	9	12.5	-	-	-	A	2834359	G	A	2834359	3	1	488	1	0	0	0	0	1	0	0	0	18081	1349	47	4	1144	4	ZNF554	19	2834359	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		2834359	56294624	53	44609										
MUC16	0	genome.wustl.edu	37	chr19	9008211	9008211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	tccggtccagggtgtaggggCccagctctttgatgccattg	14	11	1	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	19	9008211	9008211	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.39341	p.G13114D	0.019	smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	974	0	0	813	218	21.1	-	-	-	T	9008211	C	T	9008211	3	4	488	1	0	0	0	0	1	0	0	0	10045	739	26	4	4358	4	MUC16	19	9008211	Missense_Mutation	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	6173852	9008211	50120772	54	44610										
EMR3	0	genome.wustl.edu	37	chr19	14774246	14774246	+	Frame_Shift_Del	DEL	G	G	-													0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ttaccgttacatgtctccaaGgggaatgtgaatagtttctg							TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	19	14774246	14774246	G	-	DEL	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	frame_shift_del	c.183	p.L62fs	0.000	smart_EGF-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	61	0	0	89	17	15.89	-	-	-	-	14774246	G	-	14774246	7	5	488	1	0	1	0	1	0	0	0	0	5143	987	35	0	1831	0	EMR3	19	14774246	Frame_Shift_Del	DEL	G	TCGA-BH-A0B4-01A-11W-A019-09	5766035	14774246	44354737	55	44611										
CYP2S1	0	genome.wustl.edu	37	chr19	41709354	41709354	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	ctgccctcctcttgcttgcaGagtgggtacgtgaggagctg	14	11	1	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	19	41709354	41709354	G	C	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	splice_site	c.977-1	e7-1	0.999	-	-	-	no_errors	CYP2S1	HGNC	ENSG00000167600	46	0	0	26	7	21.21	-	-	-	C	41709354	G	C	41709354	5	2	488	1	0	0	0	0	0	0	1	0	4205	956	33	2	1002	2	CYP2S1	19	41709354	Splice_Site	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	26935108	41709354	17419629	56	44612										
CCDC155	0	genome.wustl.edu	37	chr19	49898468	49898468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	caacagcctggaccccaatgGggagggccctaaggccactg	13	14	0	0			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	19	49898468	49898468	G	T	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.254	p.G85V	0.114	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	142	0	0	99	44	30.77	-	-	-	T	49898468	G	T	49898468	3	4	488	1	0	0	0	0	1	0	0	0	2814	1232	43	4	264	4	CCDC155	19	49898468	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	8189114	49898468	9230515	57	44613										
SLC12A5	0	genome.wustl.edu	37	chr20	44665392	44665392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	cctcacagacgatgctcacgGccatctccatgagtgcaatt	8	14	3	2			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	20	44665392	44665392	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.508	p.A170T	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	34	0	0	51	7	12.07	-	-	-	A	44665392	G	A	44665392	3	1	488	1	0	0	0	0	1	0	0	0	14475	1203	42	4	582	4	SLC12A5	20	44665392	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		44665392	18360128	58	44614										
PRPS2	0	genome.wustl.edu	37	chrX	12837706	12837706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gaaggcgaatgaagtggaccGgatggtcctggtgggcgacg	19	7	0	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	X	12837706	12837706	G	A	SNP	PRPS2	ENST00000398491	human	ensembl	69_37n	1	known	missense	c.620	p.R207Q	1.000	pfam_PRibTrfase,tigrfam_Rib-P_diPkinase	pfam_PRibTrfase,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS2	HGNC	ENSG00000101911	132	0	0	60	49	44.95	-	-	-	A	12837706	G	A	12837706	3	1	488	1	0	0	0	0	1	0	0	0	12661	1116	39	1	638	1	PRPS2	23	12837706	Missense_Mutation	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09		12837706	142432854	59	44615										
TXLNG	0	genome.wustl.edu	37	chrX	16859739	16859739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	gcaacacctgtgatgcagccCtgtactgccctggattctca	9	14	1	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	X	16859739	16859739	C	T	SNP	TXLNG	ENST00000380122	human	ensembl	69_37n	1	known	silent	c.1437	p.P479	0.000	NULL	pfam_Taxilin	-	no_errors	TXLNG	HGNC	ENSG00000086712	131	0	0	60	50	45.45	-	-	-	T	16859739	C	T	16859739	2	4	488	1	0	0	0	0	0	0	0	1	16886	668	24	4		4	TXLNG	23	16859739	Silent	SNP	C	TCGA-BH-A0B4-01A-11W-A019-09	4022033	16859739	138410821	60	44616										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685704	125685704	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186440677966102	11	0.011416951899596	2.61893860561915	4.10035842293907	2.01290322580645	1	1	7	agcctgatggacagcagcctGgatagtgcgctcccggcttt	13	12	0	1			TCGA-BH-A0B4-01A-11W-A019-09	TCGA-BH-A0B4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	83bee702-eb97-4216-a47e-d4e4eece279a	cf1209cc-b0f9-40d1-9f55-f04a74981a96	X	125685704	125685704	G	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	silent	c.888	p.S296	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	23	0	0	9	8	44.44	-	-	-	T	125685704	G	T	125685704	2	4	488	1	0	0	0	0	0	0	0	1	4296	1335	47	4		4	DCAF12L1	23	125685704	Silent	SNP	G	TCGA-BH-A0B4-01A-11W-A019-09	108825965	125685704	29584856	61	44617										
PLD5	0	genome.wustl.edu	37	chr1	242277235	242277235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	aggcaggtagtccatgacagCgatgtacacatactgcttgg	12	9	0	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	1	242277235	242277235	C	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.1027	p.A343T	0.979	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	249	0	0	264	42	13.68	-	-	-	T	242277235	C	T	242277235	3	4	489	1	0	0	0	0	1	0	0	0	12123	768	27	1	599	1	PLD5	1	242277235	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		242277235	6973386	1	44618										
RIF1	0	genome.wustl.edu	37	chr2	152320040	152320040	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctggtttgcttaatcaaacaGaatgtgtgtcagataatcag	9	6	3	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	2	152320040	152320040	G	A	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.4006	p.E1336K	0.934	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	84	0	0	176	87	33.08	-	-	-	A	152320040	G	A	152320040	3	1	489	1	0	0	0	0	1	0	0	0	13443	943	33	2	4120	2	RIF1	2	152320040	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		152320040	90879333	2	44619										
PSMD1	0	genome.wustl.edu	37	chr2	232035376	232035376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	atggcccaaaaatcgaggagGaggaacaagagccagaaccc	12	10	0	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	2	232035376	232035376	G	A	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.2812	p.E938K	1.000	pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	422	0	0	207	74	26.24	-	-	-	A	232035376	G	A	232035376	3	1	489	1	0	0	0	0	1	0	0	0	12772	1175	41	2	2906	2	PSMD1	2	232035376	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	79715336	232035376	11163997	3	44620										
CNTN6	0	genome.wustl.edu	37	chr3	1424982	1424982	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ttctctggatggtagaacctCaactggccccaaggggaact	11	11	2	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	1424982	1424982	C	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	nonsense	c.2407	p.Q803*	0.994	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	215	0	0	199	96	32.54	-	-	-	T	1424982	C	T	1424982	4	4	489	1	0	0	0	0	0	1	0	0	3675	827	29	2	2477	2	CNTN6	3	1424982	Nonsense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		1424982	196597448	4	44621										
RARB	0	genome.wustl.edu	37	chr3	25622090	25622090	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctgggcctctgggacaaattCagtgaactggccaccaagtg	12	11	2	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	25622090	25622090	C	T	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	silent	c.684	p.F228	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	217	0	0	159	33	17.19	-	-	-	T	25622090	C	T	25622090	2	4	489	1	0	0	0	0	0	0	0	1	13136	825	29	2		2	RARB	3	25622090	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	24197108	25622090	172400340	5	44622										
TGFBR2	0	genome.wustl.edu	37	chr3	30691805	30691805	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cactagagacagtttgccatGaccccaagctcccctaccat	6	16	0	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	30691805	30691805	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	1	known	missense	c.382	p.D128N	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	264	0	0	173	68	28.22	-	-	-	A	30691805	G	A	30691805	3	1	489	1	0	0	0	0	1	0	0	0	15917	1290	45	2	396	2	TGFBR2	3	30691805	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	5069715	30691805	167330625	6	44623										
CBLB	0	genome.wustl.edu	37	chr3	105439088	105439088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gaaagggcagccctgaccatCcgactcctaaacaaatagaa	8	12	0	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	105439088	105439088	C	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.1210	p.D404N	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	115	0	0	92	16	14.81	-	-	-	T	105439088	C	T	105439088	3	4	489	1	0	0	0	0	1	0	0	0	2726	855	30	2	1778	2	CBLB	3	105439088	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	74747283	105439088	92583342	7	44624										
PIK3CA	0	genome.wustl.edu	37	chr3	178916944	178916946	+	In_Frame_Del	DEL	AAG	AAG	-													0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cagtaggcaaccgtgaagaaAagatcctcaatcgagaaatt							TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	178916944	178916946	AAG	-	DEL	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	in_frame_del	c.331_333	p.K111in_frame_del	1.000:1.000:1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	61	0	0	87	61	40.94	-	-	-	-	178916946	AAG	-	178916944	7	5	489	1	0	1	0	1	0	0	0	0	11987	15	1	0	333	0	PIK3CA	3	178916944	In_Frame_Del	DEL	AAG	TCGA-BH-A0B5-01A-11D-A12Q-09	73477856	178916944	19105486	8	44625										
ACTL6A	0	genome.wustl.edu	37	chr3	179291212	179291212	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	catacctacaaaatgcatgtCaaatcagaagccagtctcca	5	12	3	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	179291212	179291212	C	G	SNP	ACTL6A	ENST00000487978	human	ensembl	69_37n	1	known	nonsense	c.317	p.S106*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACTL6A	HGNC	ENSG00000136518	209	0	0	215	48	17.91	-	-	-	G	179291212	C	G	179291212	4	3	489	1	0	0	0	0	0	1	0	0	198	813	29	2	347	2	ACTL6A	3	179291212	Nonsense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	374268	179291212	18731218	9	44626										
CWH43	0	genome.wustl.edu	37	chr4	49030718	49030718	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	acaatgaagggtggtctagtCtagaaagatcagctcacctg	11	8	4	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	4	49030718	49030718	C	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.1339	p.L447V	0.939	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	265	0	0	166	47	21.96	-	-	-	G	49030718	C	G	49030718	3	3	489	1	0	0	0	0	1	0	0	0	4104	912	32	2	1377	2	CWH43	4	49030718	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		49030718	142123558	10	44627										
PF4	0	genome.wustl.edu	37	chr4	74847580	74847580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	agcctggcttctgctctcacCgctggcgaaggcgaccacaa	11	15	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	4	74847580	74847580	C	T	SNP	PF4	ENST00000296029	human	ensembl	69_37n	-1	known	missense	c.91	p.A31T	0.380	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	PF4	HGNC	ENSG00000163737	30	0	0	17	5	22.73	-	-	-	T	74847580	C	T	74847580	3	4	489	1	0	0	0	0	1	0	0	0	11826	666	23	1	226	1	PF4	4	74847580	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	25816862	74847580	116306696	11	44628										
ZNF131	0	genome.wustl.edu	37	chr5	43175143	43175143	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctgccagggaagatcacgaaGatgctgaggatttagagacc	13	8	1	4			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	43175143	43175143	G	C	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	missense	c.1780	p.D594H	0.003	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	107	0	0	84	68	44.74	-	-	-	C	43175143	G	C	43175143	3	2	489	1	0	0	0	0	1	0	0	0	17817	942	33	2	1704	2	ZNF131	5	43175143	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		43175143	137740117	12	44629										
SLC12A2	0	genome.wustl.edu	37	chr5	127474341	127474341	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tttcgagaggaagagactttCttttctgtatttgccatctt	8	7	3	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	127474341	127474341	C	G	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	1	known	missense	c.1461	p.F487L	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	253	0	0	695	110	13.65	-	-	-	G	127474341	C	G	127474341	3	3	489	1	0	0	0	0	1	0	0	0	14472	912	32	2	1491	2	SLC12A2	5	127474341	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	84299198	127474341	53440919	13	44630										
PCDHB1	0	genome.wustl.edu	37	chr5	140431164	140431164	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctatccgctattcagtggcaGaggaaatggagagcggctcg	14	9	1	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	140431164	140431164	G	C	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.109	p.E37Q	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	156	0	0	177	61	25.52	-	-	-	C	140431164	G	C	140431164	3	2	489	1	0	0	0	0	1	0	0	0	11607	943	33	2	111	2	PCDHB1	5	140431164	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	12956823	140431164	40484096	14	44631										
GPR110	0	genome.wustl.edu	37	chr6	46977528	46977528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tttcattcactaggtggcagCctgcatcgttccactgcaaa	8	12	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	6	46977528	46977528	C	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.1643	p.G548V	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	266	0	0	85	74	46.54	-	-	-	A	46977528	C	A	46977528	3	1	489	1	0	0	0	0	1	0	0	0	6677	739	26	4	1109	4	GPR110	6	46977528	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		46977528	124137539	15	44632										
EGFR	0	genome.wustl.edu	37	chr7	55223635	55223635	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	aagtgcgaagggccttgccgCaaaggtaggaagcccgccgg	16	11	0	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	55223635	55223635	C	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	silent	c.1002	p.R334	0.993	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	37	0	0	16	6	27.27	-	-	-	A	55223635	C	A	55223635	2	1	489	1	0	0	0	0	0	0	0	1	5002	697	25	4		4	EGFR	7	55223635	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		55223635	103915028	16	44633										
RELN	0	genome.wustl.edu	37	chr7	103301856	103301856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	aaacctcaggttcccataacCggtagtgtccatggatggag	11	10	1	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	103301856	103301856	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.1408	p.G470S	0.971	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	284	0	0	156	69	30.67	-	-	-	T	103301856	C	T	103301856	3	4	489	1	0	0	0	0	1	0	0	0	13303	652	23	1	9190	1	RELN	7	103301856	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	48078221	103301856	55836807	17	44634										
IQUB	0	genome.wustl.edu	37	chr7	123152129	123152129	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	catgatgttgcggagtatatGaaacttgtcttggtgatata	11	4	1	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	123152129	123152129	G	A	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	missense	c.266	p.S89L	0.000	NULL	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	358	0	0	280	56	16.67	-	-	-	A	123152129	G	A	123152129	3	1	489	1	0	0	0	0	1	0	0	0	7874	1294	45	2	2157	2	IQUB	7	123152129	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	19850273	123152129	35986534	18	44635										
SNTG1	0	genome.wustl.edu	37	chr8	51363125	51363125	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ttcattcacagcggaactttCaggactactttttattggag	8	8	3	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	8	51363125	51363125	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	1	known	missense	c.287	p.S96L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	444	0	0	551	97	14.97	-	-	-	T	51363125	C	T	51363125	3	4	489	1	0	0	0	0	1	0	0	0	14963	838	29	2	305	2	SNTG1	8	51363125	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		51363125	95000897	19	44636										
KCNB2	0	genome.wustl.edu	37	chr8	73849283	73849283	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cagactgccaagaaaagcctGagaggccatctgcatatgaa	10	10	1	4			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	8	73849283	73849283	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	missense	c.1693	p.E565K	0.597	pfam_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv2.2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	167	1	0.6	123	26	17.45	-	-	-	A	73849283	G	A	73849283	3	1	489	1	0	0	0	0	1	0	0	0	8067	1291	45	2	1699	2	KCNB2	8	73849283	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	22486158	73849283	72514739	20	44637										
ZNF484	0	genome.wustl.edu	37	chr9	95608938	95608938	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctctcctgtatgaattctctGatgcataattagtgttgatt	7	7	2	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95608938	95608938	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.2137	p.Q713E	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	87	0	0	128	70	35.18	-	-	-	C	95608938	G	C	95608938	3	2	489	1	0	0	0	0	1	0	0	0	18033	1299	45	2	431	2	ZNF484	9	95608938	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		95608938	45604493	21	44638			1	76		3	3	1530	G		3.952985e-06
ZNF484	0	genome.wustl.edu	37	chr9	95609116	95609116	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tgaattttctggtgtgtaaaGagatttgatctgtcagtaaa	10	3	3	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95609116	95609116	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	silent	c.1959	p.L653	0.036	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	111	0	0	132	73	35.44	-	-	-	C	95609116	G	C	95609116	2	2	489	1	0	0	0	0	0	0	0	1	18033	929	33	2		2	ZNF484	9	95609116	Silent	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	178	95609116	45604315	22	44639			1	76		3	3	1530	G		3.952985e-06
ZNF484	0	genome.wustl.edu	37	chr9	95610467	95610467	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	catctccaatagtcttatcaGaattttctgttgcattgttt	5	8	4	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95610467	95610467	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.608	p.S203C	0.039	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	118	0	0	160	107	39.93	-	-	-	C	95610467	G	C	95610467	3	2	489	1	0	0	0	0	1	0	0	0	18033	942	33	2	1960	2	ZNF484	9	95610467	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	1351	95610467	45602964	23	44640			1	76		3	3	1530	G		3.952985e-06
TGFBR1	0	genome.wustl.edu	37	chr9	101908824	101908824	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	atgaaacattttgaatccttCaaacgtgctgacatctatgc	6	9	2	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	101908824	101908824	C	G	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	1	known	missense	c.1188	p.F396L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	286	0	0	252	173	40.71	-	-	-	G	101908824	C	G	101908824	3	3	489	1	0	0	0	0	1	0	0	0	15916	825	29	2	1214	2	TGFBR1	9	101908824	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	6298357	101908824	39304607	24	44641										
C9orf43	0	genome.wustl.edu	37	chr9	116175869	116175869	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gcaactatccgccgcattgaGaggggccatcctcgaatcct	10	14	0	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	116175869	116175869	G	C	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	missense	c.96	p.E32D	0.972	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	175	0	0	81	20	19.8	-	-	-	C	116175869	G	C	116175869	3	2	489	1	0	0	0	0	1	0	0	0	2508	933	33	2	98	2	C9orf43	9	116175869	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	14267045	116175869	25037562	25	44642										
PAPPA	0	genome.wustl.edu	37	chr9	119097272	119097272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ggtcgccatctcgggggtggCcctccgttccttcgacaact	12	15	1	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	119097272	119097272	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.3530	p.A1177V	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	116	0	0	20	17	45.95	-	-	-	T	119097272	C	T	119097272	3	4	489	1	0	0	0	0	1	0	0	0	11505	739	26	4	3580	4	PAPPA	9	119097272	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	2921403	119097272	22116159	26	44643										
C5	0	genome.wustl.edu	37	chr9	123722615	123722615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cctgcatttgcccacaatcaGctggattttgtgaaaattgg	9	9	1	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	123722615	123722615	G	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.4589	p.A1530V	1.000	superfamily_TIMP-like_OB-fold	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	179	0	0	187	63	25.1	-	-	-	A	123722615	G	A	123722615	3	1	489	1	0	0	0	0	1	0	0	0	2301	985	34	4	457	4	C5	9	123722615	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	4625343	123722615	17490816	27	44644										
DNAJC9	0	genome.wustl.edu	37	chr10	75003169	75003169	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	aaaattccattatttcttttCtttcttgagagcagattttt	4	6	3	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	10	75003169	75003169	C	G	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.772	p.E258Q	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	102	0	0	190	110	36.67	-	-	-	G	75003169	C	G	75003169	3	3	489	1	0	0	0	0	1	0	0	0	4691	922	32	2	14	2	DNAJC9	10	75003169	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		75003169	60531578	28	44645										
TRIM5	0	genome.wustl.edu	37	chr11	5686469	5686469	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tccctgatgtgatactttgaGagcccaggatgccagtacaa	10	10	0	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	5686469	5686469	G	C	SNP	TRIM5	ENST00000305836	human	ensembl	69_37n	-1	known	missense	c.1052	p.S351C	0.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM5	HGNC	ENSG00000132256	410	0	0	107	87	44.62	-	-	-	C	5686469	G	C	5686469	3	2	489	1	0	0	0	0	1	0	0	0	16621	942	33	2	523	2	TRIM5	11	5686469	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		5686469	129320047	29	44646										
MUS81	0	genome.wustl.edu	37	chr11	65629461	65629461	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	aggctctggcagctactggcCagctcggcactcaggagccc	13	15	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	65629461	65629461	C	T	SNP	MUS81	ENST00000524647	human	ensembl	69_37n	1	known	nonsense	c.289	p.Q97*	0.994	NULL	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_ERCC4_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MUS81	HGNC	ENSG00000172732	10	0	0	45	10	17.86	-	-	-	T	65629461	C	T	65629461	4	4	489	1	0	0	0	0	0	1	0	0	10060	594	21	4	409	4	MUS81	11	65629461	Nonsense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	59942992	65629461	69377055	30	44647										
SPATA19	0	genome.wustl.edu	37	chr11	133712412	133712412	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tgctctattcgatctcgcatGatgtcctctgtcatctcact	6	13	5	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	133712412	133712412	G	A	SNP	SPATA19	ENST00000299140	human	ensembl	69_37n	-1	known	silent	c.405	p.I135	0.022	NULL	NULL	-	no_errors	SPATA19	HGNC	ENSG00000166118	324	1	0.31	177	42	19.18	-	-	-	A	133712412	G	A	133712412	2	1	489	1	0	0	0	0	0	0	0	1	15095	1280	45	2		2	SPATA19	11	133712412	Silent	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	68082951	133712412	1294104	31	44648										
ANO2	0	genome.wustl.edu	37	chr12	5936967	5936967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tggctcgggagcaggctgtgCgcttcaggatctcgtgcacc	15	12	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	5936967	5936967	C	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.851	p.R284H	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	45	0	0	66	8	10.81	-	-	-	T	5936967	C	T	5936967	3	4	489	1	0	0	0	0	1	0	0	0	696	768	27	1	2228	1	ANO2	12	5936967	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		5936967	127914928	32	44649										
CDKN1B	0	genome.wustl.edu	37	chr12	12870853	12870853	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ggcggagcaccccaagccctCggcctgcaggaacctcttcg	12	17	1	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	12870853	12870853	C	A	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	nonsense	c.80	p.S27*	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	37	0	0	58	24	29.27	-	-	-	A	12870853	C	A	12870853	4	1	489	1	0	0	0	0	0	1	0	0	3188	893	31	3	82	3	CDKN1B	12	12870853	Nonsense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	6933886	12870853	120981042	33	44650										
BBS10	0	genome.wustl.edu	37	chr12	76740150	76740150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ggaattgttcttgagtaatgGttcataataatcagttagcc	9	5	3	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	76740150	76740150	G	A	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.1615	p.P539S	0.001	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	191	0	0	253	225	47.07	-	-	-	A	76740150	G	A	76740150	3	1	489	1	0	0	0	0	1	0	0	0	1340	1261	44	4	560	4	BBS10	12	76740150	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	63869297	76740150	57111745	34	44651										
CHPT1	0	genome.wustl.edu	37	chr12	102117533	102117533	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ccaaaagtgaactatatcttCaagacactgtctttttgggg	8	8	3	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	102117533	102117533	C	T	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	1	known	nonsense	c.973	p.Q325*	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	102	0	0	301	134	30.8	-	-	-	T	102117533	C	T	102117533	4	4	489	1	0	0	0	0	0	1	0	0	3399	827	29	2	999	2	CHPT1	12	102117533	Nonsense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	25377383	102117533	31734362	35	44652										
C12orf42	0	genome.wustl.edu	37	chr12	103695971	103695971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gggttgggcgggggggtgctGaggagcaaacctttattaac	18	6	0	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	103695971	103695971	G	A	SNP	C12orf42	ENST00000378113	human	ensembl	69_37n	-1	known	missense	c.998	p.S333L	0.000	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	14	0	0	17	6	26.09	-	-	-	A	103695971	G	A	103695971	3	1	489	1	0	0	0	0	1	0	0	0	1700	1294	45	2	88	2	C12orf42	12	103695971	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	1578438	103695971	30155924	36	44653										
ZNF268	0	genome.wustl.edu	37	chr12	133779637	133779637	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tgtggaaaagcctttacattCaagtcacagctcattgtaca	7	9	3	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	133779637	133779637	C	T	SNP	ZNF268	ENST00000228289	human	ensembl	69_37n	1	known	silent	c.1365	p.F455	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	158	0	0	274	49	15.12	-	-	-	T	133779637	C	T	133779637	2	4	489	1	0	0	0	0	0	0	0	1	17903	825	29	2		2	ZNF268	12	133779637	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	30083666	133779637	72258	37	44654										
GRK1	0	genome.wustl.edu	37	chr13	114324090	114324093	+	Frame_Shift_Del	DEL	TCTG	TCTG	-													0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gtttgaaaccaaagccgaccTctgtctggtgatgaccatca							TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	TCTG	TCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	13	114324090	114324093	TCTG	-	DEL	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	frame_shift_del	c.788_791	p.C264fs	1.000:1.000:1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	127	0	0	152	49	24.14	-	-	-	-	114324093	TCTG	-	114324090	7	5	489	1	0	1	0	1	0	0	0	0	6841	1551	54	0	794	0	GRK1	13	114324090	Frame_Shift_Del	DEL	TCTG	TCGA-BH-A0B5-01A-11D-A12Q-09		114324090	845788	38	44655										
PPP2R5E	0	genome.wustl.edu	37	chr14	63842801	63842801	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	caattttttccacaattcttCacgctccttttctttctttt	1	12	4	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	63842801	63842801	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444K	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001	632	0	0	484	119	19.73	-	-	-	T	63842801	C	T	63842801	3	4	489	1	0	0	0	0	1	0	0	0	12473	835	29	2	77	2	PPP2R5E	14	63842801	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		63842801	43506739	39	44656										
C14orf102	0	genome.wustl.edu	37	chr14	90756754	90756754	+	Frame_Shift_Del	DEL	G	G	-													0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gccccagaaaacaaagggttGaaaaaagtcaagggcttttc							TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	90756754	90756754	G	-	DEL	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	frame_shift_del	c.2040	p.F680fs	0.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	118	0	0	69	39	34.82	-	-	-	-	90756754	G	-	90756754	7	5	489	1	0	1	0	1	0	0	0	0	1747	1281	45	0	1474	0	C14orf102	14	90756754	Frame_Shift_Del	DEL	G	TCGA-BH-A0B5-01A-11D-A12Q-09	26913953	90756754	16592786	40	44657	366	2								
C14orf102	0	genome.wustl.edu	37	chr14	90756755	90756755	+	Missense_Mutation	SNP	A	A	T													0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ccccagaaaacaaagggttgAaaaaagtcaagggcttttca							TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	90756755	90756755	A	T	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.2039	p.F680Y	0.002	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	120	0	0	71	40	36.04	-	-	-	T	90756755	A	T	90756755	3	4	489	1	0	0	0	0	1	0	0	0	1747	246	9	5	1475	5	C14orf102	14	90756755	Missense_Mutation	SNP	A	TCGA-BH-A0B5-01A-11D-A12Q-09	1	90756755	16592785	41	44658	366	2								
CEMP1	0	genome.wustl.edu	37	chr16	2580833	2580833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gggcagcccaggaaagcaggCgacggatgtggatcctgacc	16	11	0	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	16	2580833	2580833	C	G	SNP	CEMP1	ENST00000382350	human	ensembl	69_37n	-1	known	missense	c.242	p.R81P	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923	33	0	0	32	17	34.69	-	-	-	G	2580833	C	G	2580833	3	3	489	1	0	0	0	0	1	0	0	0	3253	768	27	3	505	3	CEMP1	16	2580833	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		2580833	87773920	42	44659										
WSCD1	0	genome.wustl.edu	37	chr17	6021367	6021367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ccatctgtgtcaaaacccacGagagtggcaggagggagatt	13	9	2	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	6021367	6021367	G	A	SNP	WSCD1	ENST00000317744	human	ensembl	69_37n	1	known	missense	c.1234	p.E412K	1.000	NULL	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314	80	0	0	48	50	51.02	-	-	-	A	6021367	G	A	6021367	3	1	489	1	0	0	0	0	1	0	0	0	17503	1059	37	1	1260	1	WSCD1	17	6021367	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		6021367	75173843	43	44660										
ALOXE3	0	genome.wustl.edu	37	chr17	8000125	8000125	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gggtaggtgcccaggggcctCtgggaggacatcaggtaaga	18	8	2	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	8000125	8000125	C	G	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	splice_site	c.2353-1	e16-1	1.000	-	-	-	no_errors	ALOXE3	HGNC	ENSG00000179148	436	1	0.23	47	42	47.19	-	-	-	G	8000125	C	G	8000125	5	3	489	1	0	0	0	0	0	0	1	0	542	927	32	2	183	2	ALOXE3	17	8000125	Splice_Site	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	1978758	8000125	73195085	44	44661										
LYZL6	0	genome.wustl.edu	37	chr17	34264771	34264771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cctggccagaccttgacagtCtacgtggcaaaggttttccg	11	12	1	2			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	34264771	34264771	C	G	SNP	LYZL6	ENST00000293274	human	ensembl	69_37n	-1	known	missense	c.289	p.D97H	0.009	pfam_Glyco_hydro_22,pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL6	HGNC	ENSG00000161572	153	1	0.65	147	29	16.48	-	-	-	G	34264771	C	G	34264771	3	3	489	1	0	0	0	0	1	0	0	0	9201	913	32	2	169	2	LYZL6	17	34264771	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	26264646	34264771	46930439	45	44662										
MRPL45	0	genome.wustl.edu	37	chr17	36478038	36478038	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	atctatgaccggtttggccgGttgatgtatggacaggaaga	14	6	1	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	36478038	36478038	G	A	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	silent	c.690	p.R230	0.986	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	279	0	0	123	88	41.51	-	-	-	A	36478038	G	A	36478038	2	1	489	1	0	0	0	0	0	0	0	1	9881	1248	44	4		4	MRPL45	17	36478038	Silent	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	2213267	36478038	44717172	46	44663										
ZNF521	0	genome.wustl.edu	37	chr18	22806691	22806691	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gtaacttttgcttgtttactCgagggaccagtcatgtcagg	11	8	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	18	22806691	22806691	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.1191	p.S397	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	98	0	0	137	34	19.88	-	-	-	T	22806691	C	T	22806691	2	4	489	1	0	0	0	0	0	0	0	1	18061	871	31	1		1	ZNF521	18	22806691	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		22806691	55270557	47	44664										
CYP4F11	0	genome.wustl.edu	37	chr19	16034795	16034795	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gcgctgcccatcaggagtgaGataatacaggaagtccgtgt	13	9	1	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	19	16034795	16034795	G	C	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.745	p.L249V	0.820	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	189	0	0	103	23	18.25	-	-	-	C	16034795	G	C	16034795	3	2	489	1	0	0	0	0	1	0	0	0	4217	942	33	2	857	2	CYP4F11	19	16034795	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09		16034795	43094188	48	44665										
ZNF737	0	genome.wustl.edu	37	chr19	20728657	20728657	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	cttacactcatctacactttCacagccctttttaaactgta	2	13	3	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	19	20728657	20728657	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	0.716	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	467	0	0	498	104	17.28	-	-	-	T	20728657	C	T	20728657	3	4	489	1	0	0	0	0	1	0	0	0	18220	835	29	2	1262	2	ZNF737	19	20728657	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	4693862	20728657	38400326	49	44666										
LCA5L	0	genome.wustl.edu	37	chr21	40783710	40783710	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	actatagatgtttttaatttCaagctcacgatccttttcct	4	9	2	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	21	40783710	40783710	C	G	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.994	p.E332Q	0.986	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	72	0	0	221	42	15.79	-	-	-	G	40783710	C	G	40783710	3	3	489	1	0	0	0	0	1	0	0	0	8711	835	29	2	1034	2	LCA5L	21	40783710	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		40783710	7346185	50	44667										
MAPK1	0	genome.wustl.edu	37	chr22	22162014	22162014	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	attgattccaatgatgttctCatgtctgaagcgcagtaaga	9	7	2	4			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	22	22162014	22162014	C	T	SNP	MAPK1	ENST00000215832	human	ensembl	69_37n	-1	known	missense	c.241	p.E81K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK1	HGNC	ENSG00000100030	402	0	0	266	99	27.12	-	-	-	T	22162014	C	T	22162014	3	4	489	1	0	0	0	0	1	0	0	0	9342	835	29	2	869	2	MAPK1	22	22162014	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		22162014	29142552	51	44668										
FRMPD4	0	genome.wustl.edu	37	chrX	12734858	12734858	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gtgagctgcgaggaggacctCgtggtgggggagatgaacca	19	7	0	3			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	12734858	12734858	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	silent	c.2280	p.L760	0.972	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	228	0	0	110	19	14.62	-	-	-	T	12734858	C	T	12734858	2	4	489	1	0	0	0	0	0	0	0	1	6108	871	31	1		1	FRMPD4	23	12734858	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09		12734858	142535702	52	44669										
MAGEB2	0	genome.wustl.edu	37	chrX	30237091	30237091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	agtataaaataaaaaagtccGttacaaagggagaaatgctg	9	4	0	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	30237091	30237091	G	A	SNP	MAGEB2	ENST00000378988	human	ensembl	69_37n	1	known	missense	c.394	p.V132I	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399	139	0	0	165	75	31.25	-	-	-	A	30237091	G	A	30237091	3	1	489	1	0	0	0	0	1	0	0	0	9247	1145	40	1	396	1	MAGEB2	23	30237091	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	17502233	30237091	125033469	53	44670										
APEX2	0	genome.wustl.edu	37	chrX	55033173	55033173	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	gggacaggaccctggtcataGacacctttcaggcctctttc	10	13	3	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	55033173	55033173	G	A	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	1	known	missense	c.862	p.D288N	0.048	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	155	1	0.64	50	18	26.47	-	-	-	A	55033173	G	A	55033173	3	1	489	1	0	0	0	0	1	0	0	0	771	942	33	2	884	2	APEX2	23	55033173	Missense_Mutation	SNP	G	TCGA-BH-A0B5-01A-11D-A12Q-09	24796082	55033173	100237387	54	44671										
ATRX	0	genome.wustl.edu	37	chrX	76890106	76890106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tgtaaagtcttaccaaggccCatacagtgggcaagaatgca	10	9	1	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	76890106	76890106	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.4788	p.M1596I	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	231	0	0	332	84	20.19	-	-	-	T	76890106	C	T	76890106	3	4	489	1	0	0	0	0	1	0	0	0	1212	594	21	4	2766	4	ATRX	23	76890106	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	21856933	76890106	78380454	55	44672										
ATRX	0	genome.wustl.edu	37	chrX	76940061	76940061	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tggcaaaagtcacaacaaatCaagtttccaccttccgcaca	5	13	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	76940061	76940061	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	silent	c.687	p.L229	1.000	superfamily_Znf_FYVE_PHD	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	52	0	0	51	12	19.05	-	-	-	T	76940061	C	T	76940061	2	4	489	1	0	0	0	0	0	0	0	1	1212	825	29	2		2	ATRX	23	76940061	Silent	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	49955	76940061	78330499	56	44673										
BTK	0	genome.wustl.edu	37	chrX	100614283	100614283	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	tagtggttccacacttacctCttgctttagcagttgctcag	8	11	2	0			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	100614283	100614283	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.892	p.E298K	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	198	0	0	120	40	25	-	-	-	T	100614283	C	T	100614283	3	4	489	1	0	0	0	0	1	0	0	0	1566	922	32	2	1127	2	BTK	23	100614283	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	23674222	100614283	54656277	57	44674										
KIAA1210	0	genome.wustl.edu	37	chrX	118223589	118223589	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.596491228070175	34	1.08910728636824e-13	4.16862745098039	5.90555555555556	3.22121212121212	1	1	26	ctccttttcttctccatcttCttccatatgctgctgacatt	3	14	4	1			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	118223589	118223589	C	G	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1604	p.R535T	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	885	0	0	568	266	31.86	-	-	-	G	118223589	C	G	118223589	3	3	489	1	0	0	0	0	1	0	0	0	8266	913	32	2	3541	2	KIAA1210	23	118223589	Missense_Mutation	SNP	C	TCGA-BH-A0B5-01A-11D-A12Q-09	17609306	118223589	37046971	58	44675										
AGRN	0	genome.wustl.edu	37	chr1	981250	981250	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctgggccccgcgggctgtGaagctggtgagtgagggcca	18	12	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	981250	981250	G	A	SNP	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	missense	c.2674	p.E892K	1.000	smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	61	0	0	58	17	22.67	-	-	-	A	981250	G	A	981250	3	1	490	1	0	0	0	0	1	0	0	0	397	1291	45	2	2732	2	AGRN	1	981250	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		981250	248269371	1	44676										
CCNL2	0	genome.wustl.edu	37	chr1	1322688	1322688	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcatacgacctcgagcgctCtcgtcgctgatctctgtagt	9	13	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	1322688	1322688	C	T	SNP	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	missense	c.1486	p.E496K	1.000	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	39	0	0	38	13	25.49	-	-	-	T	1322688	C	T	1322688	3	4	490	1	0	0	0	0	1	0	0	0	2961	922	32	2	80	2	CCNL2	1	1322688	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	341438	1322688	247927933	2	44677										
SKI	0	genome.wustl.edu	37	chr1	2236018	2236018	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgcaggccaagcgcagcctCcaccaggtgagcggggcgag	16	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	2236018	2236018	C	T	SNP	SKI	ENST00000378536	human	ensembl	69_37n	1	known	silent	c.1761	p.L587	0.004	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933	52	0	0	52	10	16.13	-	-	-	T	2236018	C	T	2236018	2	4	490	1	0	0	0	0	0	0	0	1	14446	842	30	2		2	SKI	1	2236018	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	913330	2236018	247014603	3	44678										
LRRC47	0	genome.wustl.edu	37	chr1	3703586	3703586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcagccggccggcatctcCcacgtcctgctcctccccat	8	21	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	3703586	3703586	C	T	SNP	LRRC47	ENST00000378251	human	ensembl	69_37n	-1	known	missense	c.904	p.G302R	0.937	NULL	pfam_Leu-rich_rpt,pfam_B3/B4_tRNA-bd,smart_Leu-rich_rpt_typical-subtyp,smart_B3/B4_tRNA-bd	-	no_errors	LRRC47	HGNC	ENSG00000130764	51	0	0	59	7	10.61	-	-	-	T	3703586	C	T	3703586	3	4	490	1	0	0	0	0	1	0	0	0	9070	632	22	4	871	4	LRRC47	1	3703586	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1467568	3703586	245547035	4	44679										
CHD5	0	genome.wustl.edu	37	chr1	6194863	6194863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagcgatacttggttcccgCcccccttggagttcagtgcc	11	15	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	6194863	6194863	C	T	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.2927	p.G976D	1.000	pfam_SNF2_N	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	92	0	0	89	32	26.45	-	-	-	T	6194863	C	T	6194863	3	4	490	1	0	0	0	0	1	0	0	0	3357	739	26	4	3029	4	CHD5	1	6194863	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2491277	6194863	243055758	5	44680										
KIF1B	0	genome.wustl.edu	37	chr1	10363814	10363814	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgctcaaaatggaaaaagtCttgccactgatcggatctca	8	9	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	10363814	10363814	C	G	SNP	KIF1B	ENST00000377083	human	ensembl	69_37n	1	known	silent	c.2571	p.V857	0.978	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	26	0	0	24	5	17.24	-	-	-	G	10363814	C	G	10363814	2	3	490	1	0	0	0	0	0	0	0	1	8336	900	32	2		2	KIF1B	1	10363814	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4168951	10363814	238886807	6	44681										
MTOR	0	genome.wustl.edu	37	chr1	11175548	11175548	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgagaaacagaagacagatCagggagggatcaacagagat	13	5	2	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	11175548	11175548	C	G	SNP	MTOR	ENST00000490931	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MTOR	HGNC	ENSG00000198793	39	0	0	29	4	12.12	-	-	-	G	11175548	C	G	11175548	1	3	490	0	1	0	0	0	0	0	0	0	10026	841	29	2		2	MTOR	1	11175548	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	811734	11175548	238075073	7	44682										
VPS13D	0	genome.wustl.edu	37	chr1	12294403	12294403	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctgaacactgaccagctctCagttgcacttctcaaaggtg	8	13	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	12294403	12294403	C	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	nonsense	c.80	p.S27*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	51	0	0	50	12	19.35	-	-	-	G	12294403	C	G	12294403	4	3	490	1	0	0	0	0	0	1	0	0	17289	838	29	2	82	2	VPS13D	1	12294403	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1118855	12294403	236956218	8	44683										
VPS13D	0	genome.wustl.edu	37	chr1	12408918	12408918	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgcgggtggtctttgcagtGactatggaaggcagtgcacg	17	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	12408918	12408918	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	silent	c.9108	p.V3036	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	42	0	0	43	5	10.42	-	-	-	A	12408918	G	A	12408918	2	1	490	1	0	0	0	0	0	0	0	1	17289	1277	45	2		2	VPS13D	1	12408918	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	114515	12408918	236841703	9	44684										
PRAMEF18	0	genome.wustl.edu	37	chr1	13474917	13474917	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtttccaggctcaaattgctCagcctgcctgtgtggcgcag	12	12	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	13474917	13474917	C	T	SNP	PRAMEF18	ENST00000376126	human	ensembl	69_37n	-1	known	silent	c.1212	p.L404	0.002	NULL	NULL	-	no_errors	PRAMEF18	HGNC	ENSG00000204491	52	0	0	60	8	11.76	-	-	-	T	13474917	C	T	13474917	2	4	490	1	0	0	0	0	0	0	0	1	12511	813	29	2		2	PRAMEF18	1	13474917	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1065999	13474917	235775704	10	44685										
SPEN	0	genome.wustl.edu	37	chr1	16254693	16254693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggcgggactatccagctcGagggagagagttttattcag	14	8	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	16254693	16254693	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.1958	p.R653Q	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	22	0	0	22	4	15.38	-	-	-	A	16254693	G	A	16254693	3	1	490	1	0	0	0	0	1	0	0	0	15129	1058	37	1	2000	1	SPEN	1	16254693	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2779776	16254693	232995928	11	44686										
SPEN	0	genome.wustl.edu	37	chr1	16259369	16259369	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcctgcacaccaagcaagtGaaacagagctggctgcggcc	12	13	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	16259369	16259369	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.6634	p.E2212K	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	25	0	0	39	12	23.53	-	-	-	A	16259369	G	A	16259369	3	1	490	1	0	0	0	0	1	0	0	0	15129	1291	45	2	6676	2	SPEN	1	16259369	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4676	16259369	232991252	12	44687										
CROCC	0	genome.wustl.edu	37	chr1	17282565	17282565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cacggacagctgtgggcaagGaggccggggagctgcgaact	18	10	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	17282565	17282565	G	A	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.3778	p.E1260K	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	38	0	0	33	6	15.38	-	-	-	A	17282565	G	A	17282565	3	1	490	1	0	0	0	0	1	0	0	0	3923	1175	41	2	3876	2	CROCC	1	17282565	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1023196	17282565	231968056	13	44688										
UBR4	0	genome.wustl.edu	37	chr1	19454188	19454188	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggagtctcattactaccaGatggacttcattcagggcgc	10	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	19454188	19454188	G	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.9157	p.L3053V	0.923	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	37	0	0	29	5	14.71	-	-	-	C	19454188	G	C	19454188	3	2	490	1	0	0	0	0	1	0	0	0	17001	933	33	2	6570	2	UBR4	1	19454188	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2171623	19454188	229796433	14	44689										
EIF4G3	0	genome.wustl.edu	37	chr1	21190980	21190980	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatttttacctttgctttttCaaagtccaagtctttgccaa	5	9	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	21190980	21190980	C	G	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	missense	c.2845	p.E949Q	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	35	0	0	28	4	12.5	-	-	-	G	21190980	C	G	21190980	3	3	490	1	0	0	0	0	1	0	0	0	5075	835	29	2	1994	2	EIF4G3	1	21190980	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1736792	21190980	228059641	15	44690										
ECE1	0	genome.wustl.edu	37	chr1	21586797	21586797	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccattagaggtttggccctGagctcctcgatcctggtctc	10	13	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	21586797	21586797	G	A	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	silent	c.582	p.L194	0.894	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	27	0	0	46	6	11.54	-	-	-	A	21586797	G	A	21586797	2	1	490	1	0	0	0	0	0	0	0	1	4924	1277	45	2		2	ECE1	1	21586797	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	395817	21586797	227663824	16	44691										
EPHB2	0	genome.wustl.edu	37	chr1	23111289	23111289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgcagcggcttctacctggcCttccaggactatggcggctg	13	14	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	23111289	23111289	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	silent	c.531	p.A177	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	59	0	0	50	20	28.17	-	-	-	T	23111289	C	T	23111289	2	4	490	1	0	0	0	0	0	0	0	1	5212	668	24	4		4	EPHB2	1	23111289	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1524492	23111289	226139332	17	44692										
SRRM1	0	genome.wustl.edu	37	chr1	24977977	24977977	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagcgcagtcattctcgatCtccccgtcacagaaccaaga	7	14	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	24977977	24977977	C	G	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	missense	c.599	p.S200C	1.000	NULL	pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	31	0	0	28	8	22.22	-	-	-	G	24977977	C	G	24977977	3	3	490	1	0	0	0	0	1	0	0	0	15259	913	32	2	621	2	SRRM1	1	24977977	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1866688	24977977	224272644	18	44693										
SRRM1	0	genome.wustl.edu	37	chr1	24981345	24981345	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tatgaatactttattccacaGaagaagacgttcgtcagcat	7	8	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	24981345	24981345	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	splice_site	c.1041-1	e9-1	1.000	-	-	-	no_errors	SRRM1	HGNC	ENSG00000133226	45	0	0	27	6	18.18	-	-	-	A	24981345	G	A	24981345	5	1	490	1	0	0	0	0	0	0	1	0	15259	956	33	2	1074	2	SRRM1	1	24981345	Splice_Site	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3368	24981345	224269276	19	44694										
SERINC2	0	genome.wustl.edu	37	chr1	31896623	31896623	+	Missense_Mutation	SNP	C	C	G													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccaccgtgagccgcctcatCttcacgttcttcctcttcct							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	31896623	31896623	C	G	SNP	SERINC2	ENST00000373710	human	ensembl	69_37n	1	known	missense	c.150	p.I50M	0.996	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC2	HGNC	ENSG00000168528	39	0	0	53	11	17.19	-	-	-	G	31896623	C	G	31896623	3	3	490	1	0	0	0	0	1	0	0	0	14168	903	32	2	129	2	SERINC2	1	31896623	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6915278	31896623	217353998	20	44695	367	2								
SERINC2	0	genome.wustl.edu	37	chr1	31896632	31896632	+	Silent	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agccgcctcatcttcacgttCttcctcttcctgggggtgct							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	31896632	31896632	C	T	SNP	SERINC2	ENST00000373710	human	ensembl	69_37n	1	known	silent	c.159	p.F53	0.974	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC2	HGNC	ENSG00000168528	42	0	0	56	10	15.15	-	-	-	T	31896632	C	T	31896632	2	4	490	1	0	0	0	0	0	0	0	1	14168	912	32	2		2	SERINC2	1	31896632	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9	31896632	217353989	21	44696	367	2								
S100PBP	0	genome.wustl.edu	37	chr1	33321706	33321706	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggagcagcatttcatgttCttttgctgttttgtgctttg	10	6	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	33321706	33321706	C	G	SNP	S100PBP	ENST00000527692	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.875	-	-	-	no_errors	S100PBP	HGNC	ENSG00000116497	26	0	0	23	10	30.3	-	-	-	G	33321706	C	G	33321706	1	3	490	0	1	0	0	0	0	0	0	0	13877	928	32	2		2	S100PBP	1	33321706	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1425074	33321706	215928915	22	44697										
GJB4	0	genome.wustl.edu	37	chr1	35227498	35227498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggtgggcaagaggtgcatgGagatcttcggccccaggcac	16	10	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	35227498	35227498	G	A	SNP	GJB4	ENST00000339480	human	ensembl	69_37n	1	known	missense	c.643	p.E215K	0.874	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433	48	0	0	49	8	14.04	-	-	-	A	35227498	G	A	35227498	3	1	490	1	0	0	0	0	1	0	0	0	6462	1175	41	2	645	2	GJB4	1	35227498	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1905792	35227498	214023123	23	44698										
ZMYM4	0	genome.wustl.edu	37	chr1	35863124	35863124	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgattgcagaagatgaagaGaagaagactctatctcaggg	12	5	2	7			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	35863124	35863124	G	A	SNP	ZMYM4	ENST00000457946	human	ensembl	69_37n	1	known	missense	c.2152	p.E718K	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZMYM4	HGNC	ENSG00000146463	29	0	0	18	4	18.18	-	-	-	A	35863124	G	A	35863124	3	1	490	1	0	0	0	0	1	0	0	0	17798	933	33	2	3255	2	ZMYM4	1	35863124	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	635626	35863124	213387497	24	44699										
CDCA8	0	genome.wustl.edu	37	chr1	38171204	38171204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccctcttgctgacagcaaaGagatcttcctcactgtgcca	8	14	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	38171204	38171204	G	C	SNP	CDCA8	ENST00000327331	human	ensembl	69_37n	1	known	missense	c.676	p.E226Q	1.000	pfam_Cell_div_borealin	pfam_Cell_div_borealin,pfam_Borealin-like_N	-	no_errors	CDCA8	HGNC	ENSG00000134690	52	0	0	41	6	12.77	-	-	-	C	38171204	G	C	38171204	3	2	490	1	0	0	0	0	1	0	0	0	3121	943	33	2	706	2	CDCA8	1	38171204	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2308080	38171204	211079417	25	44700										
RRAGC	0	genome.wustl.edu	37	chr1	39311645	39311645	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctttcttcccttagaatgcaGaccagtgccaaaaatttagt	6	10	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	39311645	39311645	G	C	SNP	RRAGC	ENST00000373001	human	ensembl	69_37n	-1	known	silent	c.1014	p.V338	0.997	NULL	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGC	HGNC	ENSG00000116954	50	0	0	41	8	16.33	-	-	-	C	39311645	G	C	39311645	2	2	490	1	0	0	0	0	0	0	0	1	13760	929	33	2		2	RRAGC	1	39311645	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1140441	39311645	209938976	26	44701										
MACF1	0	genome.wustl.edu	37	chr1	39823290	39823290	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcaggatcataaagagtttGaaagctggttggaacgatcc	12	6	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	39823290	39823290	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.5482	p.E1828Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	28	0	0	35	7	16.67	-	-	-	C	39823290	G	C	39823290	3	2	490	1	0	0	0	0	1	0	0	0	9211	1291	45	2	11791	2	MACF1	1	39823290	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	511645	39823290	209427331	27	44702										
HIVEP3	0	genome.wustl.edu	37	chr1	42047350	42047350	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcaccaagaagcattttcttCtctctggcggggccacccgc	9	15	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	42047350	42047350	C	G	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.3119	p.R1040T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	31	0	0	29	6	17.14	-	-	-	G	42047350	C	G	42047350	3	3	490	1	0	0	0	0	1	0	0	0	7239	913	32	2	4125	2	HIVEP3	1	42047350	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2224060	42047350	207203271	28	44703										
BEST4	0	genome.wustl.edu	37	chr1	45250338	45250338	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccaggaatgagggccgcaGagactcggccgccgtggcca	16	14	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	45250338	45250338	G	A	SNP	BEST4	ENST00000372207	human	ensembl	69_37n	-1	known	silent	c.1111	p.L371	0.304	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST4	HGNC	ENSG00000142959	20	0	0	16	4	20	-	-	-	A	45250338	G	A	45250338	2	1	490	1	0	0	0	0	0	0	0	1	1411	933	33	2		2	BEST4	1	45250338	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3202988	45250338	204000283	29	44704										
PTCH2	0	genome.wustl.edu	37	chr1	45289025	45289025	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcaagggcatgggcggcccgCaggttccggctgccctgggt	17	13	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	45289025	45289025	C	T	SNP	PTCH2	ENST00000372192	human	ensembl	69_37n	-1	known	silent	c.3147	p.L1049	0.994	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425	35	0	0	27	5	15.62	-	-	-	T	45289025	C	T	45289025	2	4	490	1	0	0	0	0	0	0	0	1	12811	697	25	4		4	PTCH2	1	45289025	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	38687	45289025	203961596	30	44705										
NSUN4	0	genome.wustl.edu	37	chr1	46807666	46807666	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgagcccagtgacctcccctCagctcactcatgtacccttg	7	18	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	46807666	46807666	C	T	SNP	NSUN4	ENST00000498008	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	59	0	0	34	5	12.82	-	-	-	T	46807666	C	T	46807666	1	4	490	0	1	0	0	0	0	0	0	0	10753	841	29	2		2	NSUN4	1	46807666	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1518641	46807666	202442955	31	44706										
NSUN4	0	genome.wustl.edu	37	chr1	46808426	46808426	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cactccagtttccccccaacCgaagtcccctaagtccccag	5	20	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	46808426	46808426	C	T	SNP	NSUN4	ENST00000498008	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NSUN4	HGNC	ENSG00000117481	42	0	0	45	5	10	-	-	-	T	46808426	C	T	46808426	1	4	490	0	1	0	0	0	0	0	0	0	10753	667	23	1		1	NSUN4	1	46808426	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	760	46808426	202442195	32	44707										
CYP4B1	0	genome.wustl.edu	37	chr1	47284405	47284405	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacccctcacggctgcccatCaagatgccccagcttgtcct	8	18	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	47284405	47284405	C	G	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	missense	c.1458	p.I486M	0.247	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	23	0	0	42	10	19.23	-	-	-	G	47284405	C	G	47284405	3	3	490	1	0	0	0	0	1	0	0	0	4216	816	29	2	1504	2	CYP4B1	1	47284405	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	475979	47284405	201966216	33	44708										
STIL	0	genome.wustl.edu	37	chr1	47746630	47746630	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtcttactttgcagtgtctCaaaagagctggtttatcctg	9	8	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	47746630	47746630	C	T	SNP	STIL	ENST00000436811	human	ensembl	69_37n	-1	novel	missense	c.100	p.E34K	0.119	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	STIL	HGNC	ENSG00000123473	54	0	0	38	11	22.45	-	-	-	T	47746630	C	T	47746630	3	4	490	1	0	0	0	0	1	0	0	0	15373	825	29	2	2390	2	STIL	1	47746630	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	462225	47746630	201503991	34	44709										
BEND5	0	genome.wustl.edu	37	chr1	49201913	49201913	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccactcagtgacctacctCtgacgatgcttagtttgtga	8	11	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	49201913	49201913	C	G	SNP	BEND5	ENST00000371833	human	ensembl	69_37n	-1	known	missense	c.1106	p.R369T	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	85	0	0	88	12	12	-	-	-	G	49201913	C	G	49201913	3	3	490	1	0	0	0	0	1	0	0	0	1405	913	32	2	167	2	BEND5	1	49201913	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1455283	49201913	200048708	35	44710										
ELAVL4	0	genome.wustl.edu	37	chr1	50661270	50661270	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggattcatccgctttgataaGaggattgaggcagaagaagc	13	6	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	50661270	50661270	G	C	SNP	ELAVL4	ENST00000371821	human	ensembl	69_37n	1	known	missense	c.561	p.K187N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL4	HGNC	ENSG00000162374	55	0	0	44	5	10.2	-	-	-	C	50661270	G	C	50661270	3	2	490	1	0	0	0	0	1	0	0	0	5089	933	33	2	663	2	ELAVL4	1	50661270	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1459357	50661270	198589351	36	44711										
C1orf123	0	genome.wustl.edu	37	chr1	53686159	53686159	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcgcgcacccactcgcttCatctcctcctggcgcgagct	9	19	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	53686159	53686159	C	T	SNP	C1orf123	ENST00000470385	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf123	HGNC	ENSG00000162384	49	0	0	57	19	25	-	-	-	T	53686159	C	T	53686159	1	4	490	0	1	0	0	0	0	0	0	0	2010	841	29	2		2	C1orf123	1	53686159	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3024889	53686159	195564462	37	44712										
MYSM1	0	genome.wustl.edu	37	chr1	59142677	59142677	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttaacatctccacagttcttCaggccaggacgtactgaggt	9	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	59142677	59142677	C	T	SNP	MYSM1	ENST00000472487	human	ensembl	69_37n	-1	known	silent	c.1311	p.L437	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_JAB1_Mov34_MPN_PAD1,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB1_Mov34_MPN_PAD1,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601	82	0	0	61	9	12.86	-	-	-	T	59142677	C	T	59142677	2	4	490	1	0	0	0	0	0	0	0	1	10173	813	29	2		2	MYSM1	1	59142677	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5456518	59142677	190107944	38	44713										
PDE4B	0	genome.wustl.edu	37	chr1	66829094	66829094	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccattttacaacacaggaaaGagacctcctaaagacattca	5	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	66829094	66829094	G	C	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.1124	p.R375T	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	34	0	0	34	5	12.82	-	-	-	C	66829094	G	C	66829094	3	2	490	1	0	0	0	0	1	0	0	0	11713	942	33	2	1524	2	PDE4B	1	66829094	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7686417	66829094	182421527	39	44714										
LPHN2	0	genome.wustl.edu	37	chr1	82456098	82456098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attcactgaacaatgccaggGatacaagtgccatggatact	9	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	82456098	82456098	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.3694	p.D1232N	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	30	0	0	23	6	20.69	-	-	-	A	82456098	G	A	82456098	3	1	490	1	0	0	0	0	1	0	0	0	8982	1174	41	2	3555	2	LPHN2	1	82456098	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	15627004	82456098	166794523	40	44715										
SSX2IP	0	genome.wustl.edu	37	chr1	85121255	85121255	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atttcttgtgtaaaacacttAgcaggagaaagccaatctga	8	7	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	85121255	85121255	A	G	SNP	SSX2IP	ENST00000459708	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSX2IP	HGNC	ENSG00000117155	24	0	0	25	5	16.67	-	-	-	G	85121255	A	G	85121255	1	3	490	0	1	0	0	0	0	0	0	0	15295	435	15	5		5	SSX2IP	1	85121255	RNA	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	2665157	85121255	164129366	41	44716										
DDAH1	0	genome.wustl.edu	37	chr1	85784437	85784437	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acaaagactgacatgcaactCtttaccttacattattcatc	3	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	85784437	85784437	C	G	SNP	DDAH1	ENST00000474200	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	DDAH1	HGNC	ENSG00000153904	32	0	0	16	6	27.27	-	-	-	G	85784437	C	G	85784437	1	3	490	0	1	0	0	0	0	0	0	0	4352	928	32	2		2	DDAH1	1	85784437	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	663182	85784437	163466184	42	44717										
AMY2B	0	genome.wustl.edu	37	chr1	104114773	104114773	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttgcaattcacaaccctttCagaccttggtgggaaagata	9	9	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	104114773	104114773	C	T	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	silent	c.210	p.F70	0.336	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	198	0	0	184	29	13.62	-	-	-	T	104114773	C	T	104114773	2	4	490	1	0	0	0	0	0	0	0	1	595	825	29	2		2	AMY2B	1	104114773	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	18330336	104114773	145135848	43	44718										
ADORA3	0	genome.wustl.edu	37	chr1	112043256	112043256	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatggagctggtaaaggagaGagagagaggtgagataaggc	19	2	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	112043256	112043256	G	C	SNP	ADORA3	ENST00000486342	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	ADORA3	HGNC	ENSG00000121933	17	0	0	14	4	22.22	-	-	-	C	112043256	G	C	112043256	1	2	490	0	1	0	0	0	0	0	0	0	329	957	33	2		2	ADORA3	1	112043256	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7928483	112043256	137207365	44	44719										
RAP1A	0	genome.wustl.edu	37	chr1	112234037	112234037	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaggcgttgggaagtctgctCtggtaagttagccacctaac	13	9	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	112234037	112234037	C	G	SNP	RAP1A	ENST00000356415	human	ensembl	69_37n	1	known	missense	c.55	p.L19V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1A	HGNC	ENSG00000116473	45	0	0	51	11	17.74	-	-	-	G	112234037	C	G	112234037	3	3	490	1	0	0	0	0	1	0	0	0	13118	912	32	2	57	2	RAP1A	1	112234037	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	190781	112234037	137016584	45	44720										
RSBN1	0	genome.wustl.edu	37	chr1	114308679	114308679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actttccacttttaaaactgGaataggctgagtcttctgat	7	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	114308679	114308679	G	A	SNP	RSBN1	ENST00000261441	human	ensembl	69_37n	-1	known	missense	c.2332	p.P778S	0.999	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019	48	0	0	73	11	13.1	-	-	-	A	114308679	G	A	114308679	3	1	490	1	0	0	0	0	1	0	0	0	13782	1174	41	2	80	2	RSBN1	1	114308679	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2074642	114308679	134941942	46	44721										
CSDE1	0	genome.wustl.edu	37	chr1	115267858	115267858	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttacctgagtgtgttttgttCactttttctgcactgacttt	7	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	115267858	115267858	C	T	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	silent	c.1782	p.V594	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	66	0	0	63	8	11.27	-	-	-	T	115267858	C	T	115267858	2	4	490	1	0	0	0	0	0	0	0	1	3961	813	29	2		2	CSDE1	1	115267858	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	959179	115267858	133982763	47	44722										
ATP1A1	0	genome.wustl.edu	37	chr1	116936219	116936219	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggtgatgaagggcgccccaGaaaggatcctagaccgttgc	14	10	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	116936219	116936219	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.1534	p.E512K	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	67	0	0	50	9	15.25	-	-	-	A	116936219	G	A	116936219	3	1	490	1	0	0	0	0	1	0	0	0	1132	943	33	2	1596	2	ATP1A1	1	116936219	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1668361	116936219	132314402	48	44723										
WDR3	0	genome.wustl.edu	37	chr1	118492688	118492688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgtcagttactctcccaatCaaaagctattggctgtgtct	8	10	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	118492688	118492688	C	G	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	1	known	missense	c.1681	p.Q561E	1.000	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	115	0	0	140	17	10.76	-	-	-	G	118492688	C	G	118492688	3	3	490	1	0	0	0	0	1	0	0	0	17382	827	29	2	1735	2	WDR3	1	118492688	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1556469	118492688	130757933	49	44724										
GPR89A	0	genome.wustl.edu	37	chr1	145791155	145791155	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccttctggaacattgttctCcgtgccattgccatcctgaa	7	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	145791155	145791155	C	G	SNP	GPR89A	ENST00000313835	human	ensembl	69_37n	-1	known	silent	c.633	p.R211	1.000	NULL	pfam_ABA_GPCR_dom,pfam_Golgi_pH-regulator_cons_dom	-	no_errors	GPR89A	HGNC	ENSG00000117262	11	0	0	9	5	35.71	-	-	-	G	145791155	C	G	145791155	2	3	490	1	0	0	0	0	0	0	0	1	6768	842	30	2		2	GPR89A	1	145791155	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	27298467	145791155	103459466	50	44725										
TPM3	0	genome.wustl.edu	37	chr1	154155529	154155529	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcagctcgctcctctgcatCatctgcctgctgctgcagaa	8	16	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	154155529	154155529	C	T	SNP	TPM3	ENST00000330188	human	ensembl	69_37n	-1	known	missense	c.67	p.D23N	0.994	pfam_Tropomyosin	pfam_Tropomyosin,superfamily_HR1_rho-bd,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	44	0	0	34	19	35.85	-	-	-	T	154155529	C	T	154155529	3	4	490	1	0	0	0	0	1	0	0	0	16503	826	29	2	966	2	TPM3	1	154155529	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8364374	154155529	95095092	51	44726										
HCN3	0	genome.wustl.edu	37	chr1	155258262	155258262	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgccaacatgtaaaacctttGagtacatccagccttagttc	6	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	155258262	155258262	G	C	SNP	HCN3	ENST00000496230	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HCN3	HGNC	ENSG00000143630	24	0	0	27	12	30.77	-	-	-	C	155258262	G	C	155258262	1	2	490	0	1	0	0	0	0	0	0	0	7049	1305	45	2		2	HCN3	1	155258262	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1102733	155258262	93992359	52	44727										
GON4L	0	genome.wustl.edu	37	chr1	155733174	155733174	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagtaggaggcttctcagcaGagtctccaactgcttcatcc	9	12	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	155733174	155733174	G	C	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.4655	p.S1552C	0.003	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	97	0	0	71	29	28.71	-	-	-	C	155733174	G	C	155733174	3	2	490	1	0	0	0	0	1	0	0	0	6621	942	33	2	2111	2	GON4L	1	155733174	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	474912	155733174	93517447	53	44728										
GON4L	0	genome.wustl.edu	37	chr1	155823271	155823271	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaaggtagggtgattccctGagagatggccacatcaacac	13	9	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	155823271	155823271	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	nonsense	c.301	p.Q101*	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	67	0	0	69	8	10.39	-	-	-	A	155823271	G	A	155823271	4	1	490	1	0	0	0	0	0	1	0	0	6621	1299	45	2	6662	2	GON4L	1	155823271	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	90097	155823271	93427350	54	44729										
FCRL3	0	genome.wustl.edu	37	chr1	157646545	157646545	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aatcttgaactttgttctttCttgggttcagaatctagaaa	7	6	5	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	157646545	157646545	C	T	SNP	FCRL3	ENST00000292392	human	ensembl	69_37n	-1	known	splice_site	c.2089-1	e15-1	0.000	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856	40	0	0	17	20	54.05	-	-	-	T	157646545	C	T	157646545	5	4	490	1	0	0	0	0	0	0	1	0	5842	928	32	2		2	FCRL3	1	157646545	Splice_Site	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1823274	157646545	91604076	55	44730										
OR10J5	0	genome.wustl.edu	37	chr1	159505112	159505112	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcttcttccggccctcagctGaggcaatttgaaggatggaa	11	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	159505112	159505112	G	C	SNP	OR10J5	ENST00000334857	human	ensembl	69_37n	-1	known	nonsense	c.686	p.S229*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10J5	HGNC	ENSG00000184155	31	0	0	43	5	10.42	-	-	-	C	159505112	G	C	159505112	4	2	490	1	0	0	0	0	0	1	0	0	10985	1294	45	2	245	2	OR10J5	1	159505112	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1858567	159505112	89745509	56	44731										
TAGLN2	0	genome.wustl.edu	37	chr1	159888757	159888757	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgacaagggagtggtggttaGaggagatcacaggctgccct	16	7	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	159888757	159888757	G	C	SNP	TAGLN2	ENST00000478033	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.098	-	-	-	no_errors	TAGLN2	HGNC	ENSG00000158710	25	0	0	23	14	37.84	-	-	-	C	159888757	G	C	159888757	1	2	490	0	1	0	0	0	0	0	0	0	15631	957	33	2		2	TAGLN2	1	159888757	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	383645	159888757	89361864	57	44732										
C1orf226	0	genome.wustl.edu	37	chr1	162351998	162351998	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggctccagaggcttggctaGaggatgaaaggtgagcccct	15	10	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	162351998	162351998	G	C	SNP	C1orf226	ENST00000426197	human	ensembl	69_37n	1	known	missense	c.436	p.E146Q	0.957	NULL	NULL	-	no_errors	C1orf226	HGNC	ENSG00000239887	30	0	0	23	12	34.29	-	-	-	C	162351998	G	C	162351998	3	2	490	1	0	0	0	0	1	0	0	0	2052	943	33	2	442	2	C1orf226	1	162351998	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2463241	162351998	86898623	58	44733										
GORAB	0	genome.wustl.edu	37	chr1	170508668	170508668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acaatgttgagattctacctCcaaagccagattgcaaattg	7	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	170508668	170508668	C	T	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.454	p.P152S	0.999	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	51	0	0	56	11	16.42	-	-	-	T	170508668	C	T	170508668	3	4	490	1	0	0	0	0	1	0	0	0	6623	855	30	2	460	2	GORAB	1	170508668	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8156670	170508668	78741953	59	44734										
TNR	0	genome.wustl.edu	37	chr1	175372702	175372702	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagatgcagccacaggactCaaagctaaagttgccgtggc	12	11	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	175372702	175372702	C	G	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.550	p.E184Q	0.998	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	49	0	0	51	7	12.07	-	-	-	G	175372702	C	G	175372702	3	3	490	1	0	0	0	0	1	0	0	0	16433	835	29	2	3606	2	TNR	1	175372702	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4864034	175372702	73877919	60	44735										
CEP350	0	genome.wustl.edu	37	chr1	180010347	180010347	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caagaggctctggagagtcaGagacaattagaagaaacccg	12	8	2	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	180010347	180010347	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.4185	p.Q1395H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	42	0	0	34	18	34.62	-	-	-	C	180010347	G	C	180010347	3	2	490	1	0	0	0	0	1	0	0	0	3283	933	33	2	4251	2	CEP350	1	180010347	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4637645	180010347	69240274	61	44736										
DHX9	0	genome.wustl.edu	37	chr1	182847159	182847159	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cactttttcctatgtaggcaGaaagtgaaactcttcactgc	7	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	182847159	182847159	G	C	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.2202	p.Q734H	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	61	0	0	55	10	15.38	-	-	-	C	182847159	G	C	182847159	3	2	490	1	0	0	0	0	1	0	0	0	4552	933	33	2	2276	2	DHX9	1	182847159	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2836812	182847159	66403462	62	44737										
SMG7	0	genome.wustl.edu	37	chr1	183522252	183522252	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccactttcagagtgaaattCaaggcagcacggacatgtgc	10	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	183522252	183522252	C	G	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.3453	p.F1151L	0.012	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	22	0	0	11	8	42.11	-	-	-	G	183522252	C	G	183522252	3	3	490	1	0	0	0	0	1	0	0	0	14887	825	29	2	3799	2	SMG7	1	183522252	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	675093	183522252	65728369	63	44738										
TPR	0	genome.wustl.edu	37	chr1	186325574	186325574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcaagtttgagctgaagctCagtgattctgtagaaaaagt	10	6	3	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	186325574	186325574	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.1732	p.E578Q	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	29	0	0	34	11	24.44	-	-	-	G	186325574	C	G	186325574	3	3	490	1	0	0	0	0	1	0	0	0	16512	835	29	2	5507	2	TPR	1	186325574	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2803322	186325574	62925047	64	44739										
CFH	0	genome.wustl.edu	37	chr1	196709772	196709772	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccttgtaaatctccacctGagatttctcatggtgttgta	7	9	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	196709772	196709772	G	A	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.2806	p.E936K	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	60	0	0	42	35	45.45	-	-	-	A	196709772	G	A	196709772	3	1	490	1	0	0	0	0	1	0	0	0	3312	1291	45	2	2894	2	CFH	1	196709772	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10384198	196709772	52540849	65	44740										
DENND1B	0	genome.wustl.edu	37	chr1	197621422	197621422	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggtggttatacagtgatctGagagtttcattcaaatcatt	10	5	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	197621422	197621422	G	A	SNP	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	0.914	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	34	0	0	33	5	13.16	-	-	-	A	197621422	G	A	197621422	2	1	490	1	0	0	0	0	0	0	0	1	4463	1277	45	2		2	DENND1B	1	197621422	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	911650	197621422	51629199	66	44741										
SYT2	0	genome.wustl.edu	37	chr1	202573742	202573742	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaatggcgatcagtgcccaGggtggtactgcccacacaga	13	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	202573742	202573742	G	A	SNP	SYT2	ENST00000367267	human	ensembl	69_37n	-1	known	silent	c.186	p.P62	0.999	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT2	HGNC	ENSG00000143858	22	0	0	25	10	28.57	-	-	-	A	202573742	G	A	202573742	2	1	490	1	0	0	0	0	0	0	0	1	15566	987	35	4		4	SYT2	1	202573742	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4952320	202573742	46676879	67	44742										
PLEKHA6	0	genome.wustl.edu	37	chr1	204228735	204228735	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggcctctcaggccttctctCtgccttctcacagcctcggc	8	18	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	204228735	204228735	C	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	nonsense	c.658	p.E220*	0.991	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	50	0	0	46	26	36.11	-	-	-	A	204228735	C	A	204228735	4	1	490	1	0	0	0	0	0	1	0	0	12134	922	32	2	2548	2	PLEKHA6	1	204228735	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1654993	204228735	45021886	68	44743										
SLC45A3	0	genome.wustl.edu	37	chr1	205627918	205627918	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcctagaaactcccatgcaaGagctacattaaacgaagctg	7	11	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	205627918	205627918	G	C	SNP	SLC45A3	ENST00000460934	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	SLC45A3	HGNC	ENSG00000158715	44	0	0	60	27	31.03	-	-	-	C	205627918	G	C	205627918	1	2	490	0	1	0	0	0	0	0	0	0	14731	957	33	2		2	SLC45A3	1	205627918	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1399183	205627918	43622703	69	44744										
C4BPA	0	genome.wustl.edu	37	chr1	207286436	207286436	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaatggcagcctggcccttCtccaggctgtggaaagtctc	11	12	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	207286436	207286436	C	T	SNP	C4BPA	ENST00000367070	human	ensembl	69_37n	1	known	silent	c.66	p.F22	0.002	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838	21	0	0	10	11	52.38	-	-	-	T	207286436	C	T	207286436	2	4	490	1	0	0	0	0	0	0	0	1	2270	912	32	2		2	C4BPA	1	207286436	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1658518	207286436	41964185	70	44745										
CR2	0	genome.wustl.edu	37	chr1	207648450	207648450	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attctgcatattcccacaatGacatagtgtatgttgactgc	7	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	207648450	207648450	G	C	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	missense	c.2605	p.D869H	0.565	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	51	0	0	37	23	38.33	-	-	-	C	207648450	G	C	207648450	3	2	490	1	0	0	0	0	1	0	0	0	3872	1290	45	2	2659	2	CR2	1	207648450	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	362014	207648450	41602171	71	44746										
USH2A	0	genome.wustl.edu	37	chr1	215963505	215963505	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctttggaataagttcagtctCacagcattttactggcaccg	8	10	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	215963505	215963505	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10078	p.E3360K	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	41	0	0	26	30	53.57	-	-	-	T	215963505	C	T	215963505	3	4	490	1	0	0	0	0	1	0	0	0	17133	835	29	2	5618	2	USH2A	1	215963505	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8315055	215963505	33287116	72	44747										
ESRRG	0	genome.wustl.edu	37	chr1	216680404	216680404	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcaggagtggcagtgtcatCagcatcttgccagctcgacg	12	12	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	216680404	216680404	C	T	SNP	ESRRG	ENST00000408911	human	ensembl	69_37n	-1	known	silent	c.1254	p.L418	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	35	0	0	20	9	31.03	-	-	-	T	216680404	C	T	216680404	2	4	490	1	0	0	0	0	0	0	0	1	5299	813	29	2		2	ESRRG	1	216680404	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	716899	216680404	32570217	73	44748										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220335565	220335565	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccattaagtatgtagcagcaGaaaatcttttaactaagaac	6	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	220335565	220335565	G	A	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.3200	p.S1067F	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	34	0	0	37	13	26	-	-	-	A	220335565	G	A	220335565	3	1	490	1	0	0	0	0	1	0	0	0	13019	942	33	2	1013	2	RAB3GAP2	1	220335565	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3655161	220335565	28915056	74	44749										
CAPN2	0	genome.wustl.edu	37	chr1	223949411	223949411	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caagagtttttggacttcacGaacaaagcctgaaactaagg	9	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	223949411	223949411	G	A	SNP	CAPN2	ENST00000492565	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CAPN2	HGNC	ENSG00000162909	22	0	0	26	4	13.33	-	-	-	A	223949411	G	A	223949411	1	1	490	0	1	0	0	0	0	0	0	0	2652	1073	37	1		1	CAPN2	1	223949411	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3613846	223949411	25301210	75	44750										
COG2	0	genome.wustl.edu	37	chr1	230804672	230804672	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttaattttttgggcgccaGcttcctaagtgtcacacatt	7	9	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	230804672	230804672	G	A	SNP	COG2	ENST00000494371	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.002	-	-	-	no_errors	COG2	HGNC	ENSG00000135775	10	0	0	2	5	71.43	-	-	-	A	230804672	G	A	230804672	5	1	490	1	0	0	0	0	0	0	1	0	3688	986	34	4		4	COG2	1	230804672	Splice_Site	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6855261	230804672	18445949	76	44751										
KIAA1804	0	genome.wustl.edu	37	chr1	233507943	233507943	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccacgggggctcctgtgttGacttctctcctttcacttga	10	13	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	233507943	233507943	G	A	SNP	KIAA1804	ENST00000366623	human	ensembl	69_37n	1	known	silent	c.1712	p.*571	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	52	0	0	56	35	38.46	-	-	-	A	233507943	G	A	233507943	2	1	490	1	0	0	0	0	0	0	0	1	8311	1305	45	2		2	KIAA1804	1	233507943	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2703271	233507943	15742678	77	44752										
LYST	0	genome.wustl.edu	37	chr1	235909789	235909789	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cactgaacgcattttcatcaGaagcgattcagtttgagcaa	8	9	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	235909789	235909789	G	A	SNP	LYST	ENST00000487530	human	ensembl	69_37n	-1	novel	missense	c.521	p.S174F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LYST	HGNC	ENSG00000143669	57	0	0	43	30	41.1	-	-	-	A	235909789	G	A	235909789	3	1	490	1	0	0	0	0	1	0	0	0	9195	933	33	2	3686	2	LYST	1	235909789	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2401846	235909789	13340832	78	44753										
ZNF496	0	genome.wustl.edu	37	chr1	247464343	247464343	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagttgaccctccagcggaaGattttcccacagttcggaca	9	12	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	247464343	247464343	G	T	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	silent	c.1350	p.I450	0.981	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	55	0	0	70	16	18.6	-	-	-	T	247464343	G	T	247464343	2	4	490	1	0	0	0	0	0	0	0	1	18041	932	33	2		2	ZNF496	1	247464343	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11554554	247464343	1786278	79	44754										
OR2G6	0	genome.wustl.edu	37	chr1	248685614	248685614	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctcctatggctttatcactCaagctgtgttaaggataaaa	7	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	1	248685614	248685614	C	G	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	missense	c.667	p.Q223E	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	63	0	0	86	13	13.13	-	-	-	G	248685614	C	G	248685614	3	3	490	1	0	0	0	0	1	0	0	0	11073	827	29	2	669	2	OR2G6	1	248685614	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1221271	248685614	565007	80	44755										
GEN1	0	genome.wustl.edu	37	chr2	17962027	17962027	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggatttcccctgatcctacAttaccacaggaatctatttc	6	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	17962027	17962027	A	C	SNP	GEN1	ENST00000317402	human	ensembl	69_37n	1	known	silent	c.1548	p.T516	0.000	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	GEN1	HGNC	ENSG00000178295	42	0	0	30	11	26.83	-	-	-	C	17962027	A	C	17962027	2	2	490	1	0	0	0	0	0	0	0	1	6387	204	8	5		5	GEN1	2	17962027	Silent	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09		17962027	225237346	81	44756										
CENPO	0	genome.wustl.edu	37	chr2	25042510	25042510	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agctctgccaccctcctgctCacagtggtcagggcccctca	9	18	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	25042510	25042510	C	T	SNP	CENPO	ENST00000395845	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	CENPO	HGNC	ENSG00000138092	25	0	0	31	6	16.22	-	-	-	T	25042510	C	T	25042510	1	4	490	0	1	0	0	0	0	0	0	0	3268	841	29	2		2	CENPO	2	25042510	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7080483	25042510	218156863	82	44757										
ADCY3	0	genome.wustl.edu	37	chr2	25044484	25044484	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccaggtcagccaggtgctgcCagcgctctctctcggacttg	12	15	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	25044484	25044484	C	G	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	missense	c.3029	p.W1010S	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	30	0	0	32	13	28.89	-	-	-	G	25044484	C	G	25044484	3	3	490	1	0	0	0	0	1	0	0	0	295	595	21	4	417	4	ADCY3	2	25044484	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1974	25044484	218154889	83	44758										
ASXL2	0	genome.wustl.edu	37	chr2	25990551	25990551	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagctggagtttgagttttGagggctgcctgtctgtccat	13	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	25990551	25990551	G	C	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.676	p.Q226E	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	70	0	0	78	10	11.36	-	-	-	C	25990551	G	C	25990551	3	2	490	1	0	0	0	0	1	0	0	0	1071	1299	45	2	3655	2	ASXL2	2	25990551	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	946067	25990551	217208822	84	44759										
EMILIN1	0	genome.wustl.edu	37	chr2	27303691	27303691	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcagggttatgggggcgatGactgtgctgagagtcccgct	17	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	27303691	27303691	G	C	SNP	EMILIN1	ENST00000380320	human	ensembl	69_37n	1	known	missense	c.382	p.D128H	1.000	pfscan_EMI_domain	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080	77	0	0	82	13	13.68	-	-	-	C	27303691	G	C	27303691	3	2	490	1	0	0	0	0	1	0	0	0	5130	1290	45	2	392	2	EMILIN1	2	27303691	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1313140	27303691	215895682	85	44760										
GALNT14	0	genome.wustl.edu	37	chr2	31165121	31165121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcatatttccccaggtaatCaaaccaagctttgtcgatca	5	11	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	31165121	31165121	C	G	SNP	GALNT14	ENST00000349752	human	ensembl	69_37n	-1	known	missense	c.877	p.D293H	0.958	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089	43	0	0	34	8	19.05	-	-	-	G	31165121	C	G	31165121	3	3	490	1	0	0	0	0	1	0	0	0	6262	826	29	2	809	2	GALNT14	2	31165121	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3861430	31165121	212034252	86	44761										
HEATR5B	0	genome.wustl.edu	37	chr2	37247806	37247806	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaaaatctcacattagcctGatactgctccagtatcacat	5	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	37247806	37247806	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	nonsense	c.4027	p.Q1343*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	36	0	0	23	11	32.35	-	-	-	A	37247806	G	A	37247806	4	1	490	1	0	0	0	0	0	1	0	0	7083	1299	45	2	2236	2	HEATR5B	2	37247806	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6082685	37247806	205951567	87	44762										
PLEKHH2	0	genome.wustl.edu	37	chr2	43926827	43926827	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgttgataaccaagttctaGaaaacaacagaggccagaga	9	8	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	43926827	43926827	G	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.730	p.E244K	0.992	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	20	0	0	27	6	18.18	-	-	-	A	43926827	G	A	43926827	3	1	490	1	0	0	0	0	1	0	0	0	12151	943	33	2	756	2	PLEKHH2	2	43926827	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6679021	43926827	199272546	88	44763										
SRBD1	0	genome.wustl.edu	37	chr2	45645601	45645601	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttcactttcttcagctgttCtcggttgataaagggtccat	8	9	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	45645601	45645601	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.2236	p.E746K	1.000	superfamily_RuvA_2-like	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	56	0	0	53	6	10.17	-	-	-	T	45645601	C	T	45645601	3	4	490	1	0	0	0	0	1	0	0	0	15224	922	32	2	767	2	SRBD1	2	45645601	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1718774	45645601	197553772	89	44764										
MSH6	0	genome.wustl.edu	37	chr2	48028099	48028099	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccactcgcaatttgccagaaGaatacgagttgaaatctacc	7	11	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	48028099	48028099	G	A	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.2977	p.E993K	1.000	pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	17	0	0	17	5	22.73	-	-	-	A	48028099	G	A	48028099	3	1	490	1	0	0	0	0	1	0	0	0	9946	943	33	2	2991	2	MSH6	2	48028099	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2382498	48028099	195171274	90	44765										
NRXN1	0	genome.wustl.edu	37	chr2	51254725	51254725	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acggagcacacacctccgttGaggcacaccccgccctcgcc	9	20	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	51254725	51254725	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	silent	c.687	p.L229	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	8	0	0	3	5	62.5	-	-	-	A	51254725	G	A	51254725	2	1	490	1	0	0	0	0	0	0	0	1	10738	1277	45	2		2	NRXN1	2	51254725	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3226626	51254725	191944648	91	44766										
ASB3	0	genome.wustl.edu	37	chr2	53831796	53831796	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatgtcaacatagagaaggaGaagtggttgacgggaattac	14	4	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	53831796	53831796	G	C	SNP	ASB3	ENST00000490794	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB3	HGNC	ENSG00000115239	15	0	0	16	5	23.81	-	-	-	C	53831796	G	C	53831796	1	2	490	0	1	0	0	0	0	0	0	0	1028	957	33	2		2	ASB3	2	53831796	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2577071	53831796	189367577	92	44767										
ASB3	0	genome.wustl.edu	37	chr2	53831842	53831842	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacgaacagccccaggaacaGaaaccagccatggaggaagg	13	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	53831842	53831842	G	A	SNP	ASB3	ENST00000490794	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB3	HGNC	ENSG00000115239	24	0	0	18	3	14.29	-	-	-	A	53831842	G	A	53831842	1	1	490	0	1	0	0	0	0	0	0	0	1028	957	33	2		2	ASB3	2	53831842	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	46	53831842	189367531	93	44768										
FAM136A	0	genome.wustl.edu	37	chr2	70524439	70524439	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttattttccaattgataaGagagcctccttcatcttctt	4	9	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	70524439	70524439	G	C	SNP	FAM136A	ENST00000037869	human	ensembl	69_37n	-1	known	silent	c.399	p.L133	0.812	pfam_DUF842_euk	pfam_DUF842_euk	-	no_errors	FAM136A	HGNC	ENSG00000035141	45	0	0	60	7	10.45	-	-	-	C	70524439	G	C	70524439	2	2	490	1	0	0	0	0	0	0	0	1	5490	929	33	2		2	FAM136A	2	70524439	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	16692597	70524439	172674934	94	44769										
RMND5A	0	genome.wustl.edu	37	chr2	86993036	86993036	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagacaagggattgagaactCaccatatgttcacctacttg	9	9	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	86993036	86993036	C	T	SNP	RMND5A	ENST00000283632	human	ensembl	69_37n	1	known	missense	c.743	p.S248L	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5A	HGNC	ENSG00000153561	67	0	0	84	14	14.29	-	-	-	T	86993036	C	T	86993036	3	4	490	1	0	0	0	0	1	0	0	0	13483	838	29	2	765	2	RMND5A	2	86993036	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	16468597	86993036	156206337	95	44770										
KCNIP3	0	genome.wustl.edu	37	chr2	96051535	96051535	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccctggctcagggatcttCtccctcccctcacccgctgc	7	20	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	96051535	96051535	C	G	SNP	KCNIP3	ENST00000377181	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KCNIP3	HGNC	ENSG00000115041	41	0	0	44	13	22.81	-	-	-	G	96051535	C	G	96051535	1	3	490	0	1	0	0	0	0	0	0	0	8095	928	32	2		2	KCNIP3	2	96051535	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9058499	96051535	147147838	96	44771										
NCAPH	0	genome.wustl.edu	37	chr2	97035233	97035233	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtctcctacatttagccaatGaaaaggtaggtaattaaggt	9	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	97035233	97035233	G	A	SNP	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	missense	c.2161	p.E721K	1.000	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	61	0	0	56	10	15.15	-	-	-	A	97035233	G	A	97035233	3	1	490	1	0	0	0	0	1	0	0	0	10281	1291	45	2	2227	2	NCAPH	2	97035233	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	983698	97035233	146164140	97	44772										
ZAP70	0	genome.wustl.edu	37	chr2	98340802	98340802	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctgcaacctgcgcaagccGtgcaaccggccgtcgggcct	12	18	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	98340802	98340802	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	silent	c.303	p.P101	0.529	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	18	0	0	19	4	17.39	-	-	-	A	98340802	G	A	98340802	2	1	490	1	0	0	0	0	0	0	0	1	17611	1132	40	1		1	ZAP70	2	98340802	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1305569	98340802	144858571	98	44773										
VWA3B	0	genome.wustl.edu	37	chr2	98737772	98737772	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccttttcagggtttctcaaGagcctgtgaagtggcaggaa	12	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	98737772	98737772	G	C	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	missense	c.553	p.E185Q	0.723	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	38	0	0	52	10	16.13	-	-	-	C	98737772	G	C	98737772	3	2	490	1	0	0	0	0	1	0	0	0	17338	943	33	2	567	2	VWA3B	2	98737772	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	396970	98737772	144461601	99	44774										
MAP4K4	0	genome.wustl.edu	37	chr2	102450874	102450874	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgttttatttttgcagagtGatctttggtcttgtggcatt	10	5	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	102450874	102450874	G	A	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.643	p.D215N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	39	0	0	54	6	10	-	-	-	A	102450874	G	A	102450874	3	1	490	1	0	0	0	0	1	0	0	0	9333	1290	45	2	673	2	MAP4K4	2	102450874	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3713102	102450874	140748499	100	44775										
IL1RL2	0	genome.wustl.edu	37	chr2	102851551	102851551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgaggactacacagtcatgCcagagtcaattcagtacatc	8	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	102851551	102851551	C	T	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.1492	p.P498S	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	50	0	0	59	10	14.49	-	-	-	T	102851551	C	T	102851551	3	4	490	1	0	0	0	0	1	0	0	0	7718	739	26	4	1530	4	IL1RL2	2	102851551	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	400677	102851551	140347822	101	44776										
UXS1	0	genome.wustl.edu	37	chr2	106713195	106713195	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acgggctcccaccccagcatCagctttgcttttttgatgtc	8	14	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	106713195	106713195	C	T	SNP	UXS1	ENST00000283148	human	ensembl	69_37n	-1	known	silent	c.1125	p.L375	1.000	NULL	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	51	0	0	40	10	20	-	-	-	T	106713195	C	T	106713195	2	4	490	1	0	0	0	0	0	0	0	1	17206	813	29	2		2	UXS1	2	106713195	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3861644	106713195	136486178	102	44777										
MKI67IP	0	genome.wustl.edu	37	chr2	122493199	122493199	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaatcttacccttttacttCtggacagcctgaaccgtgtc	6	12	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	122493199	122493199	C	G	SNP	MKI67IP	ENST00000285814	human	ensembl	69_37n	-1	known	missense	c.233	p.R78T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_hNIFK_FHA_Ki67_binding,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MKI67IP	HGNC	ENSG00000155438	34	0	0	25	12	32.43	-	-	-	G	122493199	C	G	122493199	3	3	490	1	0	0	0	0	1	0	0	0	9670	913	32	2	672	2	MKI67IP	2	122493199	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	15780004	122493199	120706174	103	44778										
ERCC3	0	genome.wustl.edu	37	chr2	128047295	128047295	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttgtgaaagtctctgtgatGagctcagtggcctccccttc	10	12	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	128047295	128047295	G	T	SNP	ERCC3	ENST00000456257	human	ensembl	69_37n	-1	novel	nonsense	c.158	p.S53*	1.000	NULL	prints_XPGB_DNA_repair	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERCC3	HGNC	ENSG00000163161	27	0	0	32	10	23.81	-	-	-	T	128047295	G	T	128047295	4	4	490	1	0	0	0	0	0	1	0	0	5251	1277	45	2	1765	2	ERCC3	2	128047295	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5554096	128047295	115152078	104	44779										
DARS	0	genome.wustl.edu	37	chr2	136700965	136700965	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taccttctgaacatgtaactCaacgtcttgctgtgtacagc	7	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	136700965	136700965	C	G	SNP	DARS	ENST00000264161	human	ensembl	69_37n	-1	known	missense	c.406	p.E136Q	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,tigrfam_Asp-tRNA-synth_arc/euk	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	-	no_errors	DARS	HGNC	ENSG00000115866	45	0	0	47	17	26.56	-	-	-	G	136700965	C	G	136700965	3	3	490	1	0	0	0	0	1	0	0	0	4273	835	29	2	1147	2	DARS	2	136700965	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8653670	136700965	106498408	105	44780										
KCNH7	0	genome.wustl.edu	37	chr2	163241399	163241399	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagtgtctcttggaactctGataatgtcttatggtatctg	9	6	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	163241399	163241399	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	nonsense	c.2761	p.Q921*	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	56	0	0	49	6	10.91	-	-	-	A	163241399	G	A	163241399	4	1	490	1	0	0	0	0	0	1	0	0	8091	1299	45	2	845	2	KCNH7	2	163241399	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	26540434	163241399	79957974	106	44781										
SCN7A	0	genome.wustl.edu	37	chr2	167266302	167266302	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataacaaaaattgagttaatCcagtagagagcaatggacat	8	5	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	167266302	167266302	C	G	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.3855	p.W1285C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	36	0	0	20	8	28.57	-	-	-	G	167266302	C	G	167266302	3	3	490	1	0	0	0	0	1	0	0	0	14011	856	30	2	1201	2	SCN7A	2	167266302	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4024903	167266302	75933071	107	44782										
STK39	0	genome.wustl.edu	37	chr2	168994617	168994617	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccttttggaaggatctttctGaagacacagtgaaagtaatt	9	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	168994617	168994617	G	A	SNP	STK39	ENST00000355999	human	ensembl	69_37n	-1	known	nonsense	c.955	p.Q319*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648	89	0	0	73	18	19.78	-	-	-	A	168994617	G	A	168994617	4	1	490	1	0	0	0	0	0	1	0	0	15396	1299	45	2	726	2	STK39	2	168994617	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1728315	168994617	74204756	108	44783										
STK39	0	genome.wustl.edu	37	chr2	169020359	169020359	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcttgtgttctcctcggttGacaatgtattttatgatatc	7	7	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	169020359	169020359	G	C	SNP	STK39	ENST00000355999	human	ensembl	69_37n	-1	known	silent	c.462	p.V154	0.993	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648	58	0	0	56	16	22.22	-	-	-	C	169020359	G	C	169020359	2	2	490	1	0	0	0	0	0	0	0	1	15396	1277	45	2		2	STK39	2	169020359	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25742	169020359	74179014	109	44784										
LRP2	0	genome.wustl.edu	37	chr2	170147508	170147508	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aacatcatgaggaccgctttCtgtggggggaaaaagagaga	14	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	170147508	170147508	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	splice_site	c.770-1	e8-1	1.000	-	-	-	no_errors	LRP2	HGNC	ENSG00000081479	26	0	0	23	4	14.81	-	-	-	T	170147508	C	T	170147508	5	4	490	1	0	0	0	0	0	0	1	0	9022	927	32	2	13486	2	LRP2	2	170147508	Splice_Site	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1127149	170147508	73051865	110	44785										
SLC25A12	0	genome.wustl.edu	37	chr2	172641902	172641902	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaacgtggctgtggcgagtCtgtatccaccgatgtgatca	12	10	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	172641902	172641902	C	T	SNP	SLC25A12	ENST00000422440	human	ensembl	69_37n	-1	known	missense	c.1919	p.R640K	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840	68	0	0	64	28	30.43	-	-	-	T	172641902	C	T	172641902	3	4	490	1	0	0	0	0	1	0	0	0	14563	913	32	2	121	2	SLC25A12	2	172641902	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2494394	172641902	70557471	111	44786										
ITGA6	0	genome.wustl.edu	37	chr2	173335758	173335758	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgacatgaacatctttgaaGatgggccttatgaagttggt	11	5	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	173335758	173335758	G	A	SNP	ITGA6	ENST00000264106	human	ensembl	69_37n	1	known	missense	c.700	p.D234N	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	65	0	0	59	9	13.24	-	-	-	A	173335758	G	A	173335758	3	1	490	1	0	0	0	0	1	0	0	0	7934	942	33	2	718	2	ITGA6	2	173335758	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	693856	173335758	69863615	112	44787										
CHN1	0	genome.wustl.edu	37	chr2	175664667	175664667	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaaccagaaagcgtgtgttCactgttttacaagacagctg	10	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	175664667	175664667	C	T	SNP	CHN1	ENST00000488080	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHN1	HGNC	ENSG00000128656	27	0	0	13	6	31.58	-	-	-	T	175664667	C	T	175664667	1	4	490	0	1	0	0	0	0	0	0	0	3391	841	29	2		2	CHN1	2	175664667	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2328909	175664667	67534706	113	44788										
TTN	0	genome.wustl.edu	37	chr2	179560075	179560075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaatatttctaattacttacCtttaggaggtggtggtgctt	9	5	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	179560075	179560075	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.27538	p.V9180I	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	67	9	11.84	-	-	-	T	179560075	C	T	179560075	3	4	490	1	0	0	0	0	1	0	0	0	16832	695	24	4	73251	4	TTN	2	179560075	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3895408	179560075	63639298	114	44789										
TTN	0	genome.wustl.edu	37	chr2	179605520	179605520	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctgcagctgtaggttgggaGatggttccttgagaggctga	16	6	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	179605520	179605520	G	A	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11927	p.S3976F	0.009	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	20	0	0	25	8	24.24	-	-	-	A	179605520	G	A	179605520	3	1	490	1	0	0	0	0	1	0	0	0	16832	942	33	2	92349	2	TTN	2	179605520	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	45445	179605520	63593853	115	44790										
TTN	0	genome.wustl.edu	37	chr2	179612117	179612117	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgaaggattaaaatataagtCaggggactttggagattcaa	11	3	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	179612117	179612117	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.15010	p.D5004N	0.964	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	27	0	0	34	10	22.73	-	-	-	T	179612117	C	T	179612117	3	4	490	1	0	0	0	0	1	0	0	0	16832	826	29	2	95287	2	TTN	2	179612117	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6597	179612117	63587256	116	44791										
TTN	0	genome.wustl.edu	37	chr2	179612529	179612529	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtggagaaagaagcttcattCtgaacttgaacttcttcata	8	7	4	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	179612529	179612529	C	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.14598	p.Q4866H	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	32	0	0	35	9	20.45	-	-	-	G	179612529	C	G	179612529	3	3	490	1	0	0	0	0	1	0	0	0	16832	912	32	2	95699	2	TTN	2	179612529	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	412	179612529	63586844	117	44792										
TFPI	0	genome.wustl.edu	37	chr2	188361632	188361632	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtacacatttttttgcactCttccagactttcaaatcgat	4	10	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	188361632	188361632	C	G	SNP	TFPI	ENST00000233156	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	1.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436	41	0	0	29	7	19.44	-	-	-	G	188361632	C	G	188361632	3	3	490	1	0	0	0	0	1	0	0	0	15903	922	32	2	775	2	TFPI	2	188361632	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8749103	188361632	54837741	118	44793										
SDPR	0	genome.wustl.edu	37	chr2	192711414	192711414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaactgatctgtcgctgctCcatcttgtgctggttctcct	8	13	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	192711414	192711414	C	T	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	missense	c.238	p.E80K	1.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	102	0	0	93	40	30.08	-	-	-	T	192711414	C	T	192711414	3	4	490	1	0	0	0	0	1	0	0	0	14058	864	30	2	1047	2	SDPR	2	192711414	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4349782	192711414	50487959	119	44794										
SDPR	0	genome.wustl.edu	37	chr2	192711603	192711603	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggcttttcctgccgcatgtCagacccagggtgctggaact	13	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	192711603	192711603	C	G	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	missense	c.49	p.D17H	0.016	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	88	0	0	96	40	29.2	-	-	-	G	192711603	C	G	192711603	3	3	490	1	0	0	0	0	1	0	0	0	14058	826	29	2	1236	2	SDPR	2	192711603	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	189	192711603	50487770	120	44795										
DNAH7	0	genome.wustl.edu	37	chr2	196642548	196642548	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccagaaggaggaacaaaataGatgccacttgagtcgaactt	10	8	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	196642548	196642548	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.11040	p.I3680	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	52	0	0	34	8	19.05	-	-	-	A	196642548	G	A	196642548	2	1	490	1	0	0	0	0	0	0	0	1	4641	932	33	2		2	DNAH7	2	196642548	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3930945	196642548	46556825	121	44796										
DNAH7	0	genome.wustl.edu	37	chr2	196834702	196834702	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctaaatccaactttccattCagtatttgagccttttttag	5	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	196834702	196834702	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.2175	p.L725	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	48	0	0	42	12	22.22	-	-	-	T	196834702	C	T	196834702	2	4	490	1	0	0	0	0	0	0	0	1	4641	813	29	2		2	DNAH7	2	196834702	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	192154	196834702	46364671	122	44797										
TRAK2	0	genome.wustl.edu	37	chr2	202265750	202265750	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatattcctacctctgccagGagatgtgtaaccatgtcgat	9	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	202265750	202265750	G	A	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	silent	c.354	p.L118	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	44	0	0	42	6	12.5	-	-	-	A	202265750	G	A	202265750	2	1	490	1	0	0	0	0	0	0	0	1	16546	1161	41	2		2	TRAK2	2	202265750	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5431048	202265750	40933623	123	44798										
FZD7	0	genome.wustl.edu	37	chr2	202899454	202899454	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgctgggcgcactgtccgcGggcgccggggcgcagccgta	18	15	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	202899454	202899454	G	A	SNP	FZD7	ENST00000286201	human	ensembl	69_37n	1	known	silent	c.84	p.A28	0.087	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760	18	0	0	20	8	28.57	-	-	-	A	202899454	G	A	202899454	2	1	490	1	0	0	0	0	0	0	0	1	6184	1103	39	1		1	FZD7	2	202899454	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	633704	202899454	40299919	124	44799										
FZD7	0	genome.wustl.edu	37	chr2	202899764	202899764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcgcgcccgccagggctgcGaggcgctcatgaacaagttc	14	14	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	202899764	202899764	G	A	SNP	FZD7	ENST00000286201	human	ensembl	69_37n	1	known	missense	c.394	p.E132K	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760	39	0	0	62	7	10.14	-	-	-	A	202899764	G	A	202899764	3	1	490	1	0	0	0	0	1	0	0	0	6184	1059	37	1	396	1	FZD7	2	202899764	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	310	202899764	40299609	125	44800										
MDH1B	0	genome.wustl.edu	37	chr2	207619836	207619836	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaatgcgtggggcatatctCatgagtaaaactgtcttcag	11	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	207619836	207619836	C	T	SNP	MDH1B	ENST00000374412	human	ensembl	69_37n	-1	known	missense	c.807	p.M269I	0.004	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400	48	0	0	51	9	15	-	-	-	T	207619836	C	T	207619836	3	4	490	1	0	0	0	0	1	0	0	0	9480	826	29	2	781	2	MDH1B	2	207619836	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4720072	207619836	35579537	126	44801										
C2orf62	0	genome.wustl.edu	37	chr2	219227619	219227619	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagggcaaactctgctatttGacctatgtaaggggtcccct	11	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	219227619	219227619	G	A	SNP	C2orf62	ENST00000289388	human	ensembl	69_37n	1	known	silent	c.624	p.L208	0.876	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428	39	0	0	65	10	13.33	-	-	-	A	219227619	G	A	219227619	2	1	490	1	0	0	0	0	0	0	0	1	2201	1281	45	2		2	C2orf62	2	219227619	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11607783	219227619	23971754	127	44802										
EPHA4	0	genome.wustl.edu	37	chr2	222307703	222307703	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctctcttgccaggcactttGagacgcccactgcatacctc	7	16	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	222307703	222307703	G	C	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	silent	c.1920	p.L640	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	40	0	0	51	11	17.74	-	-	-	C	222307703	G	C	222307703	2	2	490	1	0	0	0	0	0	0	0	1	5206	1277	45	2		2	EPHA4	2	222307703	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3080084	222307703	20891670	128	44803										
CUL3	0	genome.wustl.edu	37	chr2	225346783	225346783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctttcagggatatctgtctCttgctgaatttcctgaaatt	7	8	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	225346783	225346783	C	G	SNP	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	missense	c.1855	p.E619Q	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	59	0	0	38	13	25.49	-	-	-	G	225346783	C	G	225346783	3	3	490	1	0	0	0	0	1	0	0	0	4087	922	32	2	463	2	CUL3	2	225346783	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3039080	225346783	17852590	129	44804										
WDR69	0	genome.wustl.edu	37	chr2	228767739	228767739	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtgtttatcatttaaccctCaaagcacattggtggcgact	8	9	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	228767739	228767739	C	T	SNP	WDR69	ENST00000309931	human	ensembl	69_37n	1	known	nonsense	c.562	p.Q188*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR69	HGNC	ENSG00000123977	48	0	0	63	14	18.18	-	-	-	T	228767739	C	T	228767739	4	4	490	1	0	0	0	0	0	1	0	0	17416	827	29	2	588	2	WDR69	2	228767739	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3420956	228767739	14431634	130	44805										
COL6A3	0	genome.wustl.edu	37	chr2	238290024	238290024	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acctggataagatcctgtccGatttccagcctctggatgac	9	12	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	238290024	238290024	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.1431	p.I477	0.987	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	41	0	0	34	7	17.07	-	-	-	A	238290024	G	A	238290024	2	1	490	1	0	0	0	0	0	0	0	1	3731	1048	37	1		1	COL6A3	2	238290024	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9522285	238290024	4909349	131	44806										
KLHL30	0	genome.wustl.edu	37	chr2	239059479	239059479	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agtcacagcacagcctgcatGagaatggcgcgctggtgcca	13	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	239059479	239059479	G	A	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	1	known	missense	c.1510	p.E504K	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427	90	0	0	96	16	14.29	-	-	-	A	239059479	G	A	239059479	3	1	490	1	0	0	0	0	1	0	0	0	8437	1291	45	2	1536	2	KLHL30	2	239059479	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	769455	239059479	4139894	132	44807										
HDLBP	0	genome.wustl.edu	37	chr2	242176096	242176096	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgatgatgatgtcacacctCcttggagagccggggtcaca	12	10	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	242176096	242176096	C	A	SNP	HDLBP	ENST00000373292	human	ensembl	69_37n	-1	novel	nonsense	c.2263	p.E755*	0.257	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDLBP	HGNC	ENSG00000115677	63	0	0	76	15	16.48	-	-	-	A	242176096	C	A	242176096	4	1	490	1	0	0	0	0	0	1	0	0	7076	854	30	2	1000	2	HDLBP	2	242176096	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3116617	242176096	1023277	133	44808										
THAP4	0	genome.wustl.edu	37	chr2	242541339	242541339	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgtggggctccttggcgaagGagatcctggcgatggagtgg	19	8	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	2	242541339	242541339	G	C	SNP	THAP4	ENST00000407315	human	ensembl	69_37n	-1	known	missense	c.1586	p.S529C	1.000	pfam_DUF1794,superfamily_Calycin-like	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946	35	0	0	36	4	10	-	-	-	C	242541339	G	C	242541339	3	2	490	1	0	0	0	0	1	0	0	0	15941	1174	41	2	155	2	THAP4	2	242541339	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	365243	242541339	658034	134	44809										
BHLHE40	0	genome.wustl.edu	37	chr3	5021412	5021412	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctcgccgcgccatggagcgGatccccagcgcgcaaccacc	12	19	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	5021412	5021412	G	A	SNP	BHLHE40	ENST00000256495	human	ensembl	69_37n	1	known	silent	c.9	p.R3	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	BHLHE40	HGNC	ENSG00000134107	41	0	0	36	18	33.33	-	-	-	A	5021412	G	A	5021412	2	1	490	1	0	0	0	0	0	0	0	1	1428	1161	41	2		2	BHLHE40	3	5021412	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		5021412	193001018	135	44810										
EDEM1	0	genome.wustl.edu	37	chr3	5248877	5248877	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggagaaggagaccctccactCtatgtcaacgtgaacatgtt	10	10	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	5248877	5248877	C	T	SNP	EDEM1	ENST00000256497	human	ensembl	69_37n	1	known	silent	c.1257	p.L419	0.864	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109	32	0	0	39	12	23.53	-	-	-	T	5248877	C	T	5248877	2	4	490	1	0	0	0	0	0	0	0	1	4946	900	32	2		2	EDEM1	3	5248877	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	227465	5248877	192773553	136	44811										
TTLL3	0	genome.wustl.edu	37	chr3	9854937	9854937	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctctgcatccacagaggatGaagatgaggacgaggagttc	14	8	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	9854937	9854937	G	A	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	missense	c.652	p.E218K	0.984	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	57	0	0	53	11	17.19	-	-	-	A	9854937	G	A	9854937	3	1	490	1	0	0	0	0	1	0	0	0	16825	1291	45	2	233	2	TTLL3	3	9854937	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4606060	9854937	188167493	137	44812										
CRELD1	0	genome.wustl.edu	37	chr3	9984832	9984832	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaagtgtagccctggctatCagcaggtgggctccaagtgt	14	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	9984832	9984832	C	G	SNP	CRELD1	ENST00000435417	human	ensembl	69_37n	1	putative	nonsense	c.176	p.S59*	1.000	superfamily_Growth_fac_rcpt	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRELD1	HGNC	ENSG00000163703	35	0	0	36	4	10	-	-	-	G	9984832	C	G	9984832	4	3	490	1	0	0	0	0	0	1	0	0	3896	827	29	2	919	2	CRELD1	3	9984832	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	129895	9984832	188037598	138	44813										
ANKRD28	0	genome.wustl.edu	37	chr3	15749438	15749438	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctatggtacttacttgccatCtgtgtctgatgtagctgcat	9	9	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	15749438	15749438	C	A	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1549	p.D517Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	67	0	0	56	10	15.15	-	-	-	A	15749438	C	A	15749438	3	1	490	1	0	0	0	0	1	0	0	0	656	913	32	2	1771	2	ANKRD28	3	15749438	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5764606	15749438	182272992	139	44814										
SATB1	0	genome.wustl.edu	37	chr3	18390766	18390766	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atttttatcttggacactctCttccaaatccttcagcagct	4	12	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	18390766	18390766	C	T	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.2188	p.E730K	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	31	0	0	33	5	13.16	-	-	-	T	18390766	C	T	18390766	3	4	490	1	0	0	0	0	1	0	0	0	13940	922	32	2	107	2	SATB1	3	18390766	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2641328	18390766	179631664	140	44815										
NEK10	0	genome.wustl.edu	37	chr3	27215993	27215993	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttatccgaaatgtccaattCatcatctacctctgaatatg	5	10	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	27215993	27215993	C	T	SNP	NEK10	ENST00000383771	human	ensembl	69_37n	-1	known	missense	c.649	p.E217K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	39	0	0	33	6	15.38	-	-	-	T	27215993	C	T	27215993	3	4	490	1	0	0	0	0	1	0	0	0	10394	841	29	2		2	NEK10	3	27215993	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8825227	27215993	170806437	141	44816										
SCN5A	0	genome.wustl.edu	37	chr3	38601833	38601833	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaaagaggttcacgcccatGatgctgaagatgagccagaa	12	9	1	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	38601833	38601833	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.4050	p.I1350	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	34	0	0	42	8	16	-	-	-	A	38601833	G	A	38601833	2	1	490	1	0	0	0	0	0	0	0	1	14010	1280	45	2		2	SCN5A	3	38601833	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11385840	38601833	159420597	142	44817										
SCN5A	0	genome.wustl.edu	37	chr3	38647444	38647444	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtggcactgctcacccacctCgtgttctttcttgagcattt	8	13	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	38647444	38647444	C	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	nonsense	c.1336	p.E446*	0.999	prints_Na_channel_a5su	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	60	0	0	78	10	11.36	-	-	-	A	38647444	C	A	38647444	4	1	490	1	0	0	0	0	0	1	0	0	14010	893	31	3	4790	3	SCN5A	3	38647444	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	45611	38647444	159374986	143	44818										
SCN10A	0	genome.wustl.edu	37	chr3	38783794	38783794	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcactcacgatgttgcctatCtggagcatggcttcgaaggt	12	10	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	38783794	38783794	C	G	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.2094	p.Q698H	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	24	0	0	17	5	22.73	-	-	-	G	38783794	C	G	38783794	3	3	490	1	0	0	0	0	1	0	0	0	14000	912	32	2	3836	2	SCN10A	3	38783794	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	136350	38783794	159238636	144	44819										
NKTR	0	genome.wustl.edu	37	chr3	42660574	42660574	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataaaggttctacgttccatCgtgtggttaaaaactttatg	8	6	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	42660574	42660574	C	T	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.196	p.R66C	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	86	0	0	50	27	35.06	-	-	-	T	42660574	C	T	42660574	3	4	490	1	0	0	0	0	1	0	0	0	10520	884	31	1	206	1	NKTR	3	42660574	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3876780	42660574	155361856	145	44820										
SETD2	0	genome.wustl.edu	37	chr3	47122395	47122395	+	RNA	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agtgagttaaccacctctgtCctcttttcacctattatatt							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	47122395	47122395	C	T	SNP	SETD2	ENST00000492397	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SETD2	HGNC	ENSG00000181555	31	0	0	32	7	17.95	-	-	-	T	47122395	C	T	47122395	1	4	490	0	1	0	0	0	0	0	0	0	14219	870	30	2		2	SETD2	3	47122395	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4461821	47122395	150900035	146	44821	368	2								
SETD2	0	genome.wustl.edu	37	chr3	47122398	47122398	+	RNA	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagttaaccacctctgtcctCttttcacctattatattttt							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	47122398	47122398	C	T	SNP	SETD2	ENST00000492397	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SETD2	HGNC	ENSG00000181555	30	0	0	32	7	17.95	-	-	-	T	47122398	C	T	47122398	1	4	490	0	1	0	0	0	0	0	0	0	14219	928	32	2		2	SETD2	3	47122398	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3	47122398	150900032	147	44822	368	2								
SETD2	0	genome.wustl.edu	37	chr3	47122419	47122419	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttcacctattatatttttCatgcatcatccaacttccca	1	12	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	47122419	47122419	C	T	SNP	SETD2	ENST00000492397	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SETD2	HGNC	ENSG00000181555	33	0	0	34	7	17.07	-	-	-	T	47122419	C	T	47122419	1	4	490	0	1	0	0	0	0	0	0	0	14219	841	29	2		2	SETD2	3	47122419	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	21	47122419	150900011	148	44823										
MAP4	0	genome.wustl.edu	37	chr3	47953733	47953733	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggaggatgaaccagagacCcaacctgactcagacaaaga	10	11	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	47953733	47953733	C	A	SNP	MAP4	ENST00000426837	human	ensembl	69_37n	-1	putative	missense	c.2229	p.W743C	1.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	36	0	0	31	4	11.43	-	-	-	A	47953733	C	A	47953733	3	1	490	1	0	0	0	0	1	0	0	0	9329	638	22	4		4	MAP4	3	47953733	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	831314	47953733	150068697	149	44824										
P4HTM	0	genome.wustl.edu	37	chr3	49041556	49041556	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgagtctgcaggagttctcCaacatggaccttcgggactt	11	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	49041556	49041556	C	T	SNP	P4HTM	ENST00000444213	human	ensembl	69_37n	1	putative	nonsense	c.538	p.Q180*	0.964	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	P4HTM	HGNC	ENSG00000178467	34	0	0	26	12	31.58	-	-	-	T	49041556	C	T	49041556	4	4	490	1	0	0	0	0	0	1	0	0	11433	581	21	4	768	4	P4HTM	3	49041556	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1087823	49041556	148980874	150	44825										
DALRD3	0	genome.wustl.edu	37	chr3	49055212	49055212	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agggtgtgggaggaagctctCtccgaggcagcgggccagtc	18	10	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	49055212	49055212	C	G	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.552	p.E184D	0.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	86	0	0	60	12	16.44	-	-	-	G	49055212	C	G	49055212	3	3	490	1	0	0	0	0	1	0	0	0	4261	912	32	2	1119	2	DALRD3	3	49055212	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	13656	49055212	148967218	151	44826										
USP4	0	genome.wustl.edu	37	chr3	49348123	49348123	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agagcccaggttgtatatgaGaggatggtggctcctgacaa	14	7	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	49348123	49348123	G	C	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.884	p.S295C	0.997	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	37	0	0	50	8	13.79	-	-	-	C	49348123	G	C	49348123	3	2	490	1	0	0	0	0	1	0	0	0	17168	942	33	2	2067	2	USP4	3	49348123	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	292911	49348123	148674307	152	44827										
RNF123	0	genome.wustl.edu	37	chr3	49736493	49736493	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttcccagccatcagcctctCtttcaaggagtccgtggcct	8	16	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	49736493	49736493	C	G	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.719	p.S240C	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	41	0	0	40	6	13.04	-	-	-	G	49736493	C	G	49736493	3	3	490	1	0	0	0	0	1	0	0	0	13519	913	32	2	753	2	RNF123	3	49736493	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	388370	49736493	148285937	153	44828										
RBM15B	0	genome.wustl.edu	37	chr3	51430965	51430965	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaaaagctgaagaatctttCagagtacgctcagacactac	7	10	3	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	51430965	51430965	C	T	SNP	RBM15B	ENST00000323686	human	ensembl	69_37n	1	novel	missense	c.2135	p.S712L	0.881	superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837	47	0	0	31	9	22.5	-	-	-	T	51430965	C	T	51430965	3	4	490	1	0	0	0	0	1	0	0	0	13200	838	29	2	2137	2	RBM15B	3	51430965	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1694472	51430965	146591465	154	44829										
CACNA2D3	0	genome.wustl.edu	37	chr3	55002509	55002509	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agatgaaacttgaatttttcCaaaggaagttctggactgcc	9	7	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	55002509	55002509	C	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.2482	p.Q828K	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	49	0	0	35	5	12.5	-	-	-	A	55002509	C	A	55002509	3	1	490	1	0	0	0	0	1	0	0	0	2575	595	21	4	2592	4	CACNA2D3	3	55002509	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3571544	55002509	143019921	155	44830										
CADPS	0	genome.wustl.edu	37	chr3	62452976	62452976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaggaaaatgcacttacccaCattttagcaaactttcagaa	5	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	62452976	62452976	C	T	SNP	CADPS	ENST00000473635	human	ensembl	69_37n	-1	known	missense	c.449	p.C150Y	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CADPS	HGNC	ENSG00000163618	36	0	0	26	5	16.13	-	-	-	T	62452976	C	T	62452976	3	4	490	1	0	0	0	0	1	0	0	0	2595	493	17	4		4	CADPS	3	62452976	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7450467	62452976	135569454	156	44831										
MAGI1	0	genome.wustl.edu	37	chr3	65344789	65344789	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaagcctccccgagcttttCatttctcatacatgcagcga	7	14	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	65344789	65344789	C	T	SNP	MAGI1	ENST00000330909	human	ensembl	69_37n	-1	known	missense	c.3757	p.E1253K	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	34	0	0	33	4	10.81	-	-	-	T	65344789	C	T	65344789	3	4	490	1	0	0	0	0	1	0	0	0	9261	835	29	2	812	2	MAGI1	3	65344789	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2891813	65344789	132677641	157	44832										
ROBO1	0	genome.wustl.edu	37	chr3	78700970	78700970	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgaagaccatgaggatgatCcaacaggctgctccaatacc	9	12	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	78700970	78700970	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	nonsense	c.2724	p.W908*	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	62	0	0	42	17	28.81	-	-	-	T	78700970	C	T	78700970	4	4	490	1	0	0	0	0	0	1	0	0	13599	856	30	2	2283	2	ROBO1	3	78700970	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	13356181	78700970	119321460	158	44833										
POU1F1	0	genome.wustl.edu	37	chr3	87309196	87309196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agccatcctcatgatctcttGagaagaaggtttattctgtt	8	8	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	87309196	87309196	G	C	SNP	POU1F1	ENST00000344265	human	ensembl	69_37n	-1	known	missense	c.802	p.Q268E	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU1F1	HGNC	ENSG00000064835	41	0	0	29	10	25.64	-	-	-	C	87309196	G	C	87309196	3	2	490	1	0	0	0	0	1	0	0	0	12342	1299	45	2	155	2	POU1F1	3	87309196	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8608226	87309196	110713234	159	44834										
IMPG2	0	genome.wustl.edu	37	chr3	100949878	100949878	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagtagatgatagcagaaaaGatgacaagaagtccaaccac	9	7	0	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	100949878	100949878	G	C	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.3345	p.I1115M	0.898	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	53	0	0	55	7	11.11	-	-	-	C	100949878	G	C	100949878	3	2	490	1	0	0	0	0	1	0	0	0	7783	932	33	2	396	2	IMPG2	3	100949878	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13640682	100949878	97072552	160	44835										
HHLA2	0	genome.wustl.edu	37	chr3	108081291	108081291	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggagcgtaaaatgttgcaGaggtaatagaagaatttggg	14	2	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	108081291	108081291	G	C	SNP	HHLA2	ENST00000357759	human	ensembl	69_37n	1	known	missense	c.1106	p.R369T	0.001	NULL	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	HHLA2	HGNC	ENSG00000114455	33	0	0	33	9	21.43	-	-	-	C	108081291	G	C	108081291	3	2	490	1	0	0	0	0	1	0	0	0	7146	942	33	2	1124	2	HHLA2	3	108081291	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7131413	108081291	89941139	161	44836										
TMPRSS7	0	genome.wustl.edu	37	chr3	111785247	111785247	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttttattctagtgagccctCaacctgcctgcaataccagc	6	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	111785247	111785247	C	T	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	nonsense	c.1186	p.Q396*	0.000	superfamily_LDrepeatLR_classA_rpt	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	30	0	0	21	10	32.26	-	-	-	T	111785247	C	T	111785247	4	4	490	1	0	0	0	0	0	1	0	0	16347	827	29	2	1224	2	TMPRSS7	3	111785247	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3703956	111785247	86237183	162	44837										
B4GALT4	0	genome.wustl.edu	37	chr3	118937545	118937545	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccatccccagtagttgttaGagaatccattcaccttgaaa	6	12	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	118937545	118937545	G	C	SNP	B4GALT4	ENST00000359213	human	ensembl	69_37n	-1	known	missense	c.749	p.S250C	1.000	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT4	HGNC	ENSG00000121578	30	0	0	30	12	28.57	-	-	-	C	118937545	G	C	118937545	3	2	490	1	0	0	0	0	1	0	0	0	1277	942	33	2	297	2	B4GALT4	3	118937545	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7152298	118937545	79084885	163	44838										
NR1I2	0	genome.wustl.edu	37	chr3	119535970	119535970	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agctccgcagcatcaatgctCagcacacccagcggctgctg	10	16	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	119535970	119535970	C	T	SNP	NR1I2	ENST00000337940	human	ensembl	69_37n	1	known	nonsense	c.1333	p.Q445*	0.998	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852	40	0	0	33	9	21.43	-	-	-	T	119535970	C	T	119535970	4	4	490	1	0	0	0	0	0	1	0	0	10693	827	29	2	1367	2	NR1I2	3	119535970	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	598425	119535970	78486460	164	44839										
POLQ	0	genome.wustl.edu	37	chr3	121217467	121217467	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcaacttctcccataaacaGaaaaatcgataccaatcaat	4	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	121217467	121217467	G	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	silent	c.2010	p.F670	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	66	0	0	63	13	17.11	-	-	-	A	121217467	G	A	121217467	2	1	490	1	0	0	0	0	0	0	0	1	12282	933	33	2		2	POLQ	3	121217467	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1681497	121217467	76804963	165	44840										
ARGFX	0	genome.wustl.edu	37	chr3	121304892	121304892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggttcaggaaccggcgattCaaattgaagaagcagcagca	12	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	121304892	121304892	C	G	SNP	ARGFX	ENST00000334384	human	ensembl	69_37n	1	known	missense	c.393	p.F131L	0.641	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ARGFX	HGNC	ENSG00000186103	42	0	0	32	9	21.95	-	-	-	G	121304892	C	G	121304892	3	3	490	1	0	0	0	0	1	0	0	0	861	825	29	2	407	2	ARGFX	3	121304892	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	87425	121304892	76717538	166	44841										
EAF2	0	genome.wustl.edu	37	chr3	121555595	121555595	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttatctggtttttccatgcCtttttctcaaatagtatcta	4	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	121555595	121555595	C	G	SNP	EAF2	ENST00000465664	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	EAF2	HGNC	ENSG00000145088	69	0	0	50	28	35.9	-	-	-	G	121555595	C	G	121555595	1	3	490	0	1	0	0	0	0	0	0	0	4911	696	24	4		4	EAF2	3	121555595	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	250703	121555595	76466835	167	44842										
PLXNA1	0	genome.wustl.edu	37	chr3	126722189	126722189	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagatcctggtggacctctCaaaccccggtggccggcctg	13	15	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	126722189	126722189	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.1394	p.S465L	0.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	74	0	0	77	22	22.22	-	-	-	T	126722189	C	T	126722189	3	4	490	1	0	0	0	0	1	0	0	0	12193	838	29	2	1404	2	PLXNA1	3	126722189	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5166594	126722189	71300241	168	44843										
RAB43	0	genome.wustl.edu	37	chr3	128810100	128810100	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgagtccttggcagacgtctCaatggcacacaggatgtcat	11	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	128810100	128810100	C	G	SNP	RAB43	ENST00000315150	human	ensembl	69_37n	-1	known	missense	c.478	p.E160Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB43	HGNC	ENSG00000172780	35	0	0	42	8	16	-	-	-	G	128810100	C	G	128810100	3	3	490	1	0	0	0	0	1	0	0	0	13028	835	29	2	164	2	RAB43	3	128810100	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2087911	128810100	69212330	169	44844										
CLDN18	0	genome.wustl.edu	37	chr3	137729229	137729229	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggctctggaggagctgcgtGaggcagagttcaggcttcac	17	9	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	137729229	137729229	G	A	SNP	CLDN18	ENST00000183605	human	ensembl	69_37n	1	known	silent	c.162	p.V54	0.149	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405	60	0	0	50	15	23.08	-	-	-	A	137729229	G	A	137729229	2	1	490	1	0	0	0	0	0	0	0	1	3509	1277	45	2		2	CLDN18	3	137729229	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8919129	137729229	60293201	170	44845										
DZIP1L	0	genome.wustl.edu	37	chr3	137783497	137783497	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccttcctggtgtggcagcCctctgtggcccagcattggg	13	13	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	137783497	137783497	C	A	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	missense	c.2115	p.R705S	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	37	0	0	38	5	11.63	-	-	-	A	137783497	C	A	137783497	3	1	490	1	0	0	0	0	1	0	0	0	4899	622	22	4	196	4	DZIP1L	3	137783497	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	54268	137783497	60238933	171	44846										
ATR	0	genome.wustl.edu	37	chr3	142231157	142231157	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtggacatttctcagctttCagtgcctgaaatttgtgcct	9	9	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	142231157	142231157	C	G	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	silent	c.4797	p.L1599	0.978	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	82	0	0	78	15	16.13	-	-	-	G	142231157	C	G	142231157	2	3	490	1	0	0	0	0	0	0	0	1	1208	813	29	2		2	ATR	3	142231157	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4447660	142231157	55791273	172	44847										
DHX36	0	genome.wustl.edu	37	chr3	154042066	154042066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatgccggcccctgccgcctCgaccaccccctccgccgccg	10	24	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	154042066	154042066	C	T	SNP	DHX36	ENST00000496811	human	ensembl	69_37n	-1	known	missense	c.140	p.R47Q	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953	40	0	0	40	12	23.08	-	-	-	T	154042066	C	T	154042066	3	4	490	1	0	0	0	0	1	0	0	0	4545	884	31	1	2986	1	DHX36	3	154042066	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11810909	154042066	43980364	173	44848										
WDR49	0	genome.wustl.edu	37	chr3	167293918	167293918	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctggatggacagctggtgttGaatatcccagagtctcaaaa	11	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	167293918	167293918	G	A	SNP	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	nonsense	c.274	p.Q92*	0.998	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	22	0	0	13	3	18.75	-	-	-	A	167293918	G	A	167293918	4	1	490	1	0	0	0	0	0	1	0	0	17399	1299	45	2	1867	2	WDR49	3	167293918	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13251852	167293918	30728512	174	44849										
LRRIQ4	0	genome.wustl.edu	37	chr3	169539937	169539937	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttaaagaacatcagggtcctCtacctggataagaacaacct	7	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	169539937	169539937	C	G	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	silent	c.228	p.L76	0.992	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	24	0	0	28	6	17.65	-	-	-	G	169539937	C	G	169539937	2	3	490	1	0	0	0	0	0	0	0	1	9097	900	32	2		2	LRRIQ4	3	169539937	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2246019	169539937	28482493	175	44850			1	77		4	3	421	N	C	5.048477e-05
LRRIQ4	0	genome.wustl.edu	37	chr3	169540268	169540268	+	Missense_Mutation	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcccccaggagctctgtgttCtctacaccctggaaatcatt							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	169540268	169540268	C	T	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	missense	c.559	p.L187F	0.177	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	27	0	0	56	11	16.42	-	-	-	T	169540268	C	T	169540268	3	4	490	1	0	0	0	0	1	0	0	0	9097	913	32	2	561	2	LRRIQ4	3	169540268	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	331	169540268	28482162	176	44851	369	2	1	77		4	3	421	N	C	5.048477e-05
LRRIQ4	0	genome.wustl.edu	37	chr3	169540270	169540270	+	Silent	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccccaggagctctgtgttctCtacaccctggaaatcattga							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	169540270	169540270	C	T	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	silent	c.561	p.L187	0.001	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	27	0	0	55	10	15.38	-	-	-	T	169540270	C	T	169540270	2	4	490	1	0	0	0	0	0	0	0	1	9097	900	32	2		2	LRRIQ4	3	169540270	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2	169540270	28482160	177	44852	369	2	1	77		4	3	421	N	C	5.048477e-05
LRRIQ4	0	genome.wustl.edu	37	chr3	169540357	169540357	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgacggggctgcagaagttCtatatggcttctaacaacct	10	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	169540357	169540357	C	G	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	missense	c.648	p.F216L	0.994	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	49	0	0	50	10	16.67	-	-	-	G	169540357	C	G	169540357	3	3	490	1	0	0	0	0	1	0	0	0	9097	912	32	2	650	2	LRRIQ4	3	169540357	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	87	169540357	28482073	178	44853			1	77		4	3	421	N	C	5.048477e-05
LRRC31	0	genome.wustl.edu	37	chr3	169569529	169569529	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcccatctttttgttggctGataaatccaattcttgaaga	7	8	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	169569529	169569529	G	A	SNP	LRRC31	ENST00000316428	human	ensembl	69_37n	-1	known	missense	c.1037	p.S346L	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248	31	0	0	39	8	17.02	-	-	-	A	169569529	G	A	169569529	3	1	490	1	0	0	0	0	1	0	0	0	9052	1294	45	2	633	2	LRRC31	3	169569529	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	29172	169569529	28452901	179	44854										
RPL22L1	0	genome.wustl.edu	37	chr3	170584177	170584177	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggagcctttgcctagtcctCcgactctgattcatcttcat	8	13	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	170584177	170584177	C	G	SNP	RPL22L1	ENST00000295830	human	ensembl	69_37n	-1	known	missense	c.361	p.E121Q	1.000	NULL	pfam_Ribosomal_L22e	-	no_errors	RPL22L1	HGNC	ENSG00000163584	27	0	0	21	9	30	-	-	-	G	170584177	C	G	170584177	3	3	490	1	0	0	0	0	1	0	0	0	13655	864	30	2	11	2	RPL22L1	3	170584177	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1014648	170584177	27438253	180	44855										
ECT2	0	genome.wustl.edu	37	chr3	172478015	172478015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actttaattcaaaagttacaCatttggtggcaaattgtaca	6	6	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	172478015	172478015	C	G	SNP	ECT2	ENST00000427830	human	ensembl	69_37n	1	known	missense	c.553	p.H185D	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	37	0	0	53	9	14.52	-	-	-	G	172478015	C	G	172478015	3	3	490	1	0	0	0	0	1	0	0	0	4936	478	17	4	571	4	ECT2	3	172478015	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1893838	172478015	25544415	181	44856										
NAALADL2	0	genome.wustl.edu	37	chr3	174581815	174581815	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctggaaagtctcataatctCaaaacaaaatcaagcaaatt	5	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	174581815	174581815	C	G	SNP	NAALADL2	ENST00000473253	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAALADL2	HGNC	ENSG00000177694	21	0	0	20	9	31.03	-	-	-	G	174581815	C	G	174581815	1	3	490	0	1	0	0	0	0	0	0	0	10202	841	29	2		2	NAALADL2	3	174581815	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2103800	174581815	23440615	182	44857										
PIK3CA	0	genome.wustl.edu	37	chr3	178916854	178916854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcaagaagcagaaagggaaGaattttttgatgaaacaaga	10	4	1	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	178916854	178916854	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	52	19	26.76	-	-	-	A	178916854	G	A	178916854	3	1	490	1	0	0	0	0	1	0	0	0	11987	943	33	2	243	2	PIK3CA	3	178916854	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4335039	178916854	19105576	183	44858										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	19	0	0	21	6	22.22	-	-	-	A	178928079	G	A	178928079	3	1	490	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11225	178928079	19094351	184	44859										
SOX2	0	genome.wustl.edu	37	chr3	181430271	181430271	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaaacagcccggaccgcgtCaagcggcccatgaatgcctt	10	14	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	181430271	181430271	C	G	SNP	SOX2	ENST00000325404	human	ensembl	69_37n	1	known	silent	c.123	p.V41	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_TF_SOX,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX2	HGNC	ENSG00000181449	39	0	0	44	11	20	-	-	-	G	181430271	C	G	181430271	2	3	490	1	0	0	0	0	0	0	0	1	15038	813	29	2		2	SOX2	3	181430271	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2502192	181430271	16592159	185	44860										
C3orf70	0	genome.wustl.edu	37	chr3	184870595	184870595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaccccgctccgacgccggcGaggccgccgcactcatttcc	10	20	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	184870595	184870595	G	A	SNP	C3orf70	ENST00000335012	human	ensembl	69_37n	-1	known	missense	c.17	p.S6L	0.804	NULL	NULL	-	no_errors	C3orf70	HGNC	ENSG00000187068	25	0	0	27	9	25	-	-	-	A	184870595	G	A	184870595	3	1	490	1	0	0	0	0	1	0	0	0	2262	1059	37	1	743	1	C3orf70	3	184870595	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3440324	184870595	13151835	186	44861										
EIF4A2	0	genome.wustl.edu	37	chr3	186504030	186504030	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttttaaggatcaaatctatGagattttccaaaaactaaac	5	6	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	186504030	186504030	G	A	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.598	p.E200K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	12	0	0	11	5	31.25	-	-	-	A	186504030	G	A	186504030	3	1	490	1	0	0	0	0	1	0	0	0	5062	1291	45	2	617	2	EIF4A2	3	186504030	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1633435	186504030	11518400	187	44862										
ATP13A5	0	genome.wustl.edu	37	chr3	193042777	193042777	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccatggcacagcctggcctGaggcaaagctgtgggcttcc	13	13	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	193042777	193042777	G	A	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	missense	c.1550	p.S517L	0.016	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	19	0	0	22	7	24.14	-	-	-	A	193042777	G	A	193042777	3	1	490	1	0	0	0	0	1	0	0	0	1131	1294	45	2	2172	2	ATP13A5	3	193042777	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6538747	193042777	4979653	188	44863										
RNF168	0	genome.wustl.edu	37	chr3	196199119	196199119	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agtagatgctccaaatctatCagtttttgggtaaagtttat	8	5	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	196199119	196199119	C	T	SNP	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	silent	c.1287	p.L429	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	20	0	0	16	7	30.43	-	-	-	T	196199119	C	T	196199119	2	4	490	1	0	0	0	0	0	0	0	1	13545	813	29	2		2	RNF168	3	196199119	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3156342	196199119	1823311	189	44864										
RNF168	0	genome.wustl.edu	37	chr3	196199266	196199266	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggaaatctccttactgatCagtaggcacgactcttcatt	7	10	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	3	196199266	196199266	C	T	SNP	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	silent	c.1140	p.L380	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	45	0	0	39	11	22	-	-	-	T	196199266	C	T	196199266	2	4	490	1	0	0	0	0	0	0	0	1	13545	813	29	2		2	RNF168	3	196199266	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	147	196199266	1823164	190	44865										
ZNF718	0	genome.wustl.edu	37	chr4	124673	124673	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcagccctctgtcctcagtCccctccggtgagggacccgc	10	19	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	124673	124673	C	T	SNP	ZNF718	ENST00000511079	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	43	0	0	55	17	23.29	-	-	-	T	124673	C	T	124673	1	4	490	0	1	0	0	0	0	0	0	0	18216	870	30	2		2	ZNF718	4	124673	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		124673	191029603	191	44866										
GAK	0	genome.wustl.edu	37	chr4	860255	860255	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaattgagaaattcgccgaaGagatcaggattggagcaggg	15	5	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	860255	860255	G	C	SNP	GAK	ENST00000511980	human	ensembl	69_37n	-1	novel	missense	c.275	p.S92C	0.971	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GAK	HGNC	ENSG00000178950	40	0	0	35	4	10.26	-	-	-	C	860255	G	C	860255	3	2	490	1	0	0	0	0	1	0	0	0	6245	929	33	2	1023	2	GAK	4	860255	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	735582	860255	190294021	192	44867										
CRIPAK	0	genome.wustl.edu	37	chr4	1388324	1388324	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgagccctcgctttgtgccAatgtggagtgcccgcctgct	12	13	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	1388324	1388324	A	C	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	missense	c.25	p.N9H	0.039	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	115	1	0.86	210	29	12.13	-	-	-	C	1388324	A	C	1388324	3	2	490	1	0	0	0	0	1	0	0	0	3907	130	5	5	27	5	CRIPAK	4	1388324	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	528069	1388324	189765952	193	44868										
LETM1	0	genome.wustl.edu	37	chr4	1838207	1838207	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aacatgttggggaagagcttCacagcaacaggcagcagaaa	12	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	1838207	1838207	C	A	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	silent	c.687	p.V229	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	85	0	0	104	14	11.86	-	-	-	A	1838207	C	A	1838207	2	1	490	1	0	0	0	0	0	0	0	1	8788	813	29	2		2	LETM1	4	1838207	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	449883	1838207	189316069	194	44869			2	78		3	3	85	C		2.010904e-06
LETM1	0	genome.wustl.edu	37	chr4	1838230	1838230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcaacaggcagcagaaactCcatgaacggcaccaccacga	9	14	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	1838230	1838230	C	G	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.664	p.E222Q	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	94	0	0	108	17	13.6	-	-	-	G	1838230	C	G	1838230	3	3	490	1	0	0	0	0	1	0	0	0	8788	864	30	2	1599	2	LETM1	4	1838230	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	23	1838230	189316046	195	44870			2	78		3	3	85	C		2.010904e-06
LETM1	0	genome.wustl.edu	37	chr4	1838291	1838291	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggaagaggtcagcgcagatCcggagaaactggaaggggcg	18	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	1838291	1838291	C	G	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	silent	c.603	p.R201	0.992	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	87	0	0	104	14	11.86	-	-	-	G	1838291	C	G	1838291	2	3	490	1	0	0	0	0	0	0	0	1	8788	842	30	2		2	LETM1	4	1838291	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	61	1838291	189315985	196	44871			2	78		3	3	85	C		2.010904e-06
CC2D2A	0	genome.wustl.edu	37	chr4	15516354	15516354	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggaagaactgcttaatggtGatgatgccgaggacttccta	12	7	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	15516354	15516354	G	A	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.742	p.D248N	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	77	0	0	62	20	24.39	-	-	-	A	15516354	G	A	15516354	3	1	490	1	0	0	0	0	1	0	0	0	2753	1290	45	2	975	2	CC2D2A	4	15516354	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13678063	15516354	175637922	197	44872										
PROM1	0	genome.wustl.edu	37	chr4	15995622	15995622	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctaattacctcattaatgttGagatgttcactgatattgaa	6	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	15995622	15995622	G	A	SNP	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	silent	c.1755	p.L585	0.974	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	37	0	0	37	6	13.95	-	-	-	A	15995622	G	A	15995622	2	1	490	1	0	0	0	0	0	0	0	1	12636	1277	45	2		2	PROM1	4	15995622	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	479268	15995622	175158654	198	44873										
LGI2	0	genome.wustl.edu	37	chr4	25005573	25005573	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgcgattttccatcgatatCaacaaactccgcatccgtgt	6	12	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	25005573	25005573	C	T	SNP	LGI2	ENST00000382114	human	ensembl	69_37n	-1	known	missense	c.1138	p.D380N	0.987	pfam_EPTP,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	64	0	0	70	14	16.67	-	-	-	T	25005573	C	T	25005573	3	4	490	1	0	0	0	0	1	0	0	0	8807	826	29	2	503	2	LGI2	4	25005573	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9009951	25005573	166148703	199	44874										
PAICS	0	genome.wustl.edu	37	chr4	57314710	57314710	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgctacacaggctatatttGaaatactggagaaatcctgg	9	7	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	57314710	57314710	G	C	SNP	PAICS	ENST00000264221	human	ensembl	69_37n	1	known	missense	c.520	p.E174Q	1.000	pfam_SAICAR_synth	pfam_SAICAR_synth,pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050	40	0	0	33	5	13.16	-	-	-	C	57314710	G	C	57314710	3	2	490	1	0	0	0	0	1	0	0	0	11468	1291	45	2	559	2	PAICS	4	57314710	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	32309137	57314710	133839566	200	44875										
TMPRSS11E	0	genome.wustl.edu	37	chr4	69343230	69343230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tatttctcttgcagagctttCtagccctgttccctacacaa	5	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	69343230	69343230	C	G	SNP	TMPRSS11E	ENST00000305363	human	ensembl	69_37n	1	known	missense	c.851	p.S284C	0.793	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11E	HGNC	ENSG00000087128	44	0	0	61	7	10.29	-	-	-	G	69343230	C	G	69343230	3	3	490	1	0	0	0	0	1	0	0	0	16337	913	32	2	881	2	TMPRSS11E	4	69343230	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	12028520	69343230	121811046	201	44876										
C4orf40	0	genome.wustl.edu	37	chr4	71024528	71024528	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagaggcacctgttggagtgGagccagctgcagaggaacct	15	10	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	71024528	71024528	G	C	SNP	C4orf40	ENST00000344526	human	ensembl	69_37n	1	known	missense	c.559	p.E187Q	0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	51	0	0	78	11	12.36	-	-	-	C	71024528	G	C	71024528	3	2	490	1	0	0	0	0	1	0	0	0	2290	1175	41	2	569	2	C4orf40	4	71024528	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1681298	71024528	120129748	202	44877										
CXCL6	0	genome.wustl.edu	37	chr4	74702511	74702511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcccgtgtcccgggtccttCgggctccttgtgcgcgctgc	15	16	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	74702511	74702511	C	T	SNP	CXCL6	ENST00000226317	human	ensembl	69_37n	1	known	missense	c.44	p.S15L	0.000	prints_Chemokine_CXCL8/IL8	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	CXCL6	HGNC	ENSG00000124875	41	0	0	45	23	33.82	-	-	-	T	74702511	C	T	74702511	3	4	490	1	0	0	0	0	1	0	0	0	4119	893	31	1	46	1	CXCL6	4	74702511	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3677983	74702511	116451765	203	44878										
NUP54	0	genome.wustl.edu	37	chr4	77069334	77069334	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgccgccgcccgcccttttCcaatgcctctaaagtctccg	7	19	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	77069334	77069334	C	G	SNP	NUP54	ENST00000510884	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NUP54	HGNC	ENSG00000138750	25	0	0	21	6	22.22	-	-	-	G	77069334	C	G	77069334	1	3	490	0	1	0	0	0	0	0	0	0	10840	870	30	2		2	NUP54	4	77069334	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2366823	77069334	114084942	204	44879										
HNRPDL	0	genome.wustl.edu	37	chr4	83346751	83346751	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctggtgtatgccttgcgctCtgcccgcaacgtgcgacccc	11	16	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	83346751	83346751	C	G	SNP	HNRPDL	ENST00000514511	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HNRPDL	HGNC	ENSG00000152795	26	0	0	32	5	13.51	-	-	-	G	83346751	C	G	83346751	1	3	490	0	1	0	0	0	0	0	0	0	7327	928	32	2		2	HNRPDL	4	83346751	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6277417	83346751	107807525	205	44880										
SLC10A6	0	genome.wustl.edu	37	chr4	87745030	87745030	+	Silent	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttttccatgtttgttcttCaatctcctcttgtacgtctg							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	87745030	87745030	C	T	SNP	SLC10A6	ENST00000273905	human	ensembl	69_37n	-1	known	silent	c.945	p.L315	0.797	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283	78	0	0	88	21	19.27	-	-	-	T	87745030	C	T	87745030	2	4	490	1	0	0	0	0	0	0	0	1	14467	825	29	2		2	SLC10A6	4	87745030	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4398279	87745030	103409246	206	44881	370	2								
SLC10A6	0	genome.wustl.edu	37	chr4	87745039	87745039	+	Missense_Mutation	SNP	C	C	G													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtttgttcttcaatctcctCttgtacgtctgatatgctag							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	87745039	87745039	C	G	SNP	SLC10A6	ENST00000273905	human	ensembl	69_37n	-1	known	missense	c.936	p.K312N	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283	75	0	0	90	21	18.92	-	-	-	G	87745039	C	G	87745039	3	3	490	1	0	0	0	0	1	0	0	0	14467	912	32	2	201	2	SLC10A6	4	87745039	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9	87745039	103409237	207	44882	370	2								
CENPE	0	genome.wustl.edu	37	chr4	104116339	104116339	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagtaaatctgtaatggtttCattgtatatttccatgtaag	8	4	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	104116339	104116339	C	T	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.409	p.E137K	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	53	0	0	33	5	13.16	-	-	-	T	104116339	C	T	104116339	3	4	490	1	0	0	0	0	1	0	0	0	3259	835	29	2	7876	2	CENPE	4	104116339	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	16371300	104116339	87037937	208	44883										
ARHGEF38	0	genome.wustl.edu	37	chr4	106569819	106569819	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgacaaatcatctgaagattCtgaccagaggagaatcacag	9	8	4	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	106569819	106569819	C	T	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	1	putative	silent	c.988	p.L330	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	50	0	0	23	5	17.86	-	-	-	T	106569819	C	T	106569819	2	4	490	1	0	0	0	0	0	0	0	1	909	928	32	2		2	ARHGEF38	4	106569819	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2453480	106569819	84584457	209	44884										
PAPSS1	0	genome.wustl.edu	37	chr4	108641343	108641343	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggggatctccatgaccgcgGagcgcgctgagcagccgggg	18	13	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	108641343	108641343	G	A	SNP	PAPSS1	ENST00000504987	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PAPSS1	HGNC	ENSG00000138801	59	0	0	58	18	23.68	-	-	-	A	108641343	G	A	108641343	1	1	490	0	1	0	0	0	0	0	0	0	11507	1189	41	2		2	PAPSS1	4	108641343	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2071524	108641343	82512933	210	44885										
LARP7	0	genome.wustl.edu	37	chr4	113568856	113568856	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttatttcaagatatagaaatCtctactgaagaggaaaagga	8	4	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	113568856	113568856	C	T	SNP	LARP7	ENST00000511529	human	ensembl	69_37n	1	novel	missense	c.389	p.S130F	0.937	NULL	pfam_RRM_3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LARP7	HGNC	ENSG00000174720	74	0	0	21	7	25	-	-	-	T	113568856	C	T	113568856	3	4	490	1	0	0	0	0	1	0	0	0	8687	903	32	2	1034	2	LARP7	4	113568856	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4927513	113568856	77585420	211	44886										
ANK2	0	genome.wustl.edu	37	chr4	114278026	114278026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgaagaccgtcatgctgtttCcactgaggctgaagacaggt	12	9	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	114278026	114278026	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.8252	p.S2751F	0.001	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	17	0	0	8	3	27.27	-	-	-	T	114278026	C	T	114278026	3	4	490	1	0	0	0	0	1	0	0	0	621	855	30	2	8467	2	ANK2	4	114278026	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	709170	114278026	76876250	212	44887										
NDST3	0	genome.wustl.edu	37	chr4	119154241	119154241	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccccagcccaaaaacctttGaggaggtacagttctttaat	7	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	119154241	119154241	G	C	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	missense	c.1894	p.E632Q	1.000	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	44	0	0	54	8	12.9	-	-	-	C	119154241	G	C	119154241	3	2	490	1	0	0	0	0	1	0	0	0	10329	1291	45	2	1924	2	NDST3	4	119154241	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4876215	119154241	72000035	213	44888										
SEC24D	0	genome.wustl.edu	37	chr4	119649793	119649793	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agagtatgggtttcccacttCaggcagcaatgtcttagatt	10	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	119649793	119649793	C	T	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.2884	p.E962K	1.000	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	42	0	0	36	4	10	-	-	-	T	119649793	C	T	119649793	3	4	490	1	0	0	0	0	1	0	0	0	14085	835	29	2	225	2	SEC24D	4	119649793	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	495552	119649793	71504483	214	44889										
ABCE1	0	genome.wustl.edu	37	chr4	146025645	146025645	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtcgacaggaatgcaaaaaGagttgtcctgtagttcgaat	11	6	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	146025645	146025645	G	C	SNP	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	missense	c.81	p.K27N	1.000	pfam_RNaseL-inhib_metal-bd_dom,prints_ABC_E	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	31	0	0	33	6	15.38	-	-	-	C	146025645	G	C	146025645	3	2	490	1	0	0	0	0	1	0	0	0	64	933	33	2	83	2	ABCE1	4	146025645	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	26375852	146025645	45128631	215	44890										
POU4F2	0	genome.wustl.edu	37	chr4	147561215	147561215	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcttcatcggtgcccatctCgcacccttccgcgttggcgg	10	16	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	147561215	147561215	C	G	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.485	p.S162W	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	36	0	0	52	10	16.13	-	-	-	G	147561215	C	G	147561215	3	3	490	1	0	0	0	0	1	0	0	0	12352	893	31	3	491	3	POU4F2	4	147561215	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1535570	147561215	43593061	216	44891										
EDNRA	0	genome.wustl.edu	37	chr4	148453722	148453722	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcctttggtaactgccattGaaattgtctccatctggatc	7	10	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	148453722	148453722	G	T	SNP	EDNRA	ENST00000324300	human	ensembl	69_37n	1	known	nonsense	c.613	p.E205*	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ETA_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	EDNRA	HGNC	ENSG00000151617	52	0	0	45	13	22.41	-	-	-	T	148453722	G	T	148453722	4	4	490	1	0	0	0	0	0	1	0	0	4954	1291	45	2	623	2	EDNRA	4	148453722	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	892507	148453722	42700554	217	44892										
GRIA2	0	genome.wustl.edu	37	chr4	158262534	158262534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaggatggtgtctcccatcGaaagtgctgaggatctttct	12	8	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	158262534	158262534	G	A	SNP	GRIA2	ENST00000264426	human	ensembl	69_37n	1	known	missense	c.1963	p.E655K	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	57	0	0	45	7	13.46	-	-	-	A	158262534	G	A	158262534	3	1	490	1	0	0	0	0	1	0	0	0	6819	1059	37	1	2009	1	GRIA2	4	158262534	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9808812	158262534	32891742	218	44893										
SH3RF1	0	genome.wustl.edu	37	chr4	170037744	170037744	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttctgtacctggatgggtgtCactgctgccgtggggcgttc	15	10	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	170037744	170037744	C	T	SNP	SH3RF1	ENST00000284637	human	ensembl	69_37n	-1	known	silent	c.1815	p.V605	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447	49	0	0	28	14	33.33	-	-	-	T	170037744	C	T	170037744	2	4	490	1	0	0	0	0	0	0	0	1	14347	813	29	2		2	SH3RF1	4	170037744	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11775210	170037744	21116532	219	44894										
SORBS2	0	genome.wustl.edu	37	chr4	186544246	186544246	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggctcctcctcagcgctctCagggatgagttcctctcggg	13	14	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	186544246	186544246	C	G	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	silent	c.2325	p.L775	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	29	0	0	28	6	17.14	-	-	-	G	186544246	C	G	186544246	2	3	490	1	0	0	0	0	0	0	0	1	15017	813	29	2		2	SORBS2	4	186544246	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	16506502	186544246	4610030	220	44895										
FRG1	0	genome.wustl.edu	37	chr4	190882150	190882150	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaggattgtttgagcccagGagttcaaggctgcagtgagc	16	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	4	190882150	190882150	G	A	SNP	FRG1	ENST00000514482	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1	HGNC	ENSG00000109536	13	0	0	7	5	41.67	-	-	-	A	190882150	G	A	190882150	1	1	490	0	1	0	0	0	0	0	0	0	6095	1189	41	2		2	FRG1	4	190882150	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4337904	190882150	272126	221	44896										
AHRR	0	genome.wustl.edu	37	chr5	353864	353864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaggcccgccgtgggggcaGagaagtccaacccctccaag	15	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	353864	353864	G	C	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	missense	c.94	p.E32Q	0.982	pfscan_HLH_DNA-bd	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	53	0	0	53	7	11.67	-	-	-	C	353864	G	C	353864	3	2	490	1	0	0	0	0	1	0	0	0	417	943	33	2	104	2	AHRR	5	353864	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		353864	180561396	222	44897										
CLPTM1L	0	genome.wustl.edu	37	chr5	1320765	1320765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtagaccagaaacaccacgtCgtcccggaagcaggccagcc	11	15	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	1320765	1320765	C	T	SNP	CLPTM1L	ENST00000320895	human	ensembl	69_37n	-1	known	missense	c.1498	p.D500N	1.000	NULL	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656	28	0	0	34	5	12.82	-	-	-	T	1320765	C	T	1320765	3	4	490	1	0	0	0	0	1	0	0	0	3585	884	31	1	126	1	CLPTM1L	5	1320765	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	966901	1320765	179594495	223	44898										
ADCY2	0	genome.wustl.edu	37	chr5	7690768	7690768	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtcatcccccgaggtgtctGagagacatttgttcctcctt	10	12	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	7690768	7690768	G	C	SNP	ADCY2	ENST00000513693	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ADCY2	HGNC	ENSG00000078295	35	0	0	33	10	22.73	-	-	-	C	7690768	G	C	7690768	1	2	490	0	1	0	0	0	0	0	0	0	294	1305	45	2		2	ADCY2	5	7690768	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6370003	7690768	173224492	224	44899										
DNAH5	0	genome.wustl.edu	37	chr5	13737381	13737381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggtctgtattcctcccggGctgagttaatttgaacttct	9	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	13737381	13737381	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.11435	p.A3812V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	56	0	0	49	32	39.51	-	-	-	A	13737381	G	A	13737381	3	1	490	1	0	0	0	0	1	0	0	0	4640	1203	42	4	2495	4	DNAH5	5	13737381	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6046613	13737381	167177879	225	44900										
CDH10	0	genome.wustl.edu	37	chr5	24535355	24535355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtattgctctctgttttctCtgttcatgttcggtaaagca	9	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	24535355	24535355	C	T	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	missense	c.680	p.R227K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	70	0	0	89	11	11	-	-	-	T	24535355	C	T	24535355	3	4	490	1	0	0	0	0	1	0	0	0	3125	913	32	2	1718	2	CDH10	5	24535355	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	10797974	24535355	156379905	226	44901										
PDZD2	0	genome.wustl.edu	37	chr5	32087471	32087471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctgactacagcaagactcGatcagcatcggaaaccagca	8	14	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	32087471	32087471	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.3917	p.R1306Q	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	20	0	0	10	11	52.38	-	-	-	A	32087471	G	A	32087471	3	1	490	1	0	0	0	0	1	0	0	0	11774	1058	37	1	3991	1	PDZD2	5	32087471	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7552116	32087471	148827789	227	44902										
PDZD2	0	genome.wustl.edu	37	chr5	32109108	32109108	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcttgataagtgcttgaattCaagactggtcagtccaagag	10	7	3	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	32109108	32109108	C	T	SNP	PDZD2	ENST00000513490	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401	36	0	0	33	10	23.26	-	-	-	T	32109108	C	T	32109108	1	4	490	0	1	0	0	0	0	0	0	0	11774	841	29	2		2	PDZD2	5	32109108	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	21637	32109108	148806152	228	44903										
TTC23L	0	genome.wustl.edu	37	chr5	34864560	34864560	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actggcagagaagcctatttCaacctgcagaaggcagagag	12	9	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	34864560	34864560	C	A	SNP	TTC23L	ENST00000505624	human	ensembl	69_37n	1	known	missense	c.555	p.F185L	0.998	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	63	0	0	54	6	10	-	-	-	A	34864560	C	A	34864560	3	1	490	1	0	0	0	0	1	0	0	0	16788	825	29	2	573	2	TTC23L	5	34864560	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2755452	34864560	146050700	229	44904										
UGT3A2	0	genome.wustl.edu	37	chr5	36049116	36049116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caactctgctttcagtagaaGatgagacaaaactggcctag	9	9	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	36049116	36049116	G	A	SNP	UGT3A2	ENST00000282507	human	ensembl	69_37n	-1	known	missense	c.718	p.L240F	0.529	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671	64	0	0	80	28	25.93	-	-	-	A	36049116	G	A	36049116	3	1	490	1	0	0	0	0	1	0	0	0	17061	942	33	2	869	2	UGT3A2	5	36049116	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1184556	36049116	144866144	230	44905										
C5orf42	0	genome.wustl.edu	37	chr5	37180995	37180995	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagatttattctgaccatttCtttcctcagttccacctgga	5	11	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	37180995	37180995	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.5534	p.R1845K	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	34	0	0	41	13	24.07	-	-	-	T	37180995	C	T	37180995	3	4	490	1	0	0	0	0	1	0	0	0	2322	913	32	2	4163	2	C5orf42	5	37180995	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1131879	37180995	143734265	231	44906										
C5orf42	0	genome.wustl.edu	37	chr5	37187656	37187656	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgctcaatcatacaagaatCaaactccacttcaaggtcct	5	12	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	37187656	37187656	C	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.3940	p.D1314H	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	38	0	0	39	13	25	-	-	-	G	37187656	C	G	37187656	3	3	490	1	0	0	0	0	1	0	0	0	2322	826	29	2	5773	2	C5orf42	5	37187656	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6661	37187656	143727604	232	44907										
C6	0	genome.wustl.edu	37	chr5	41153970	41153970	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggaattcccctggcatgtGtaccttgatggcccagcaac	10	13	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	41153970	41153970	G	A	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	silent	c.2232	p.Y744	0.991	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	54	0	0	53	6	10.17	-	-	-	A	41153970	G	A	41153970	2	1	490	1	0	0	0	0	0	0	0	1	2336	1372	48	4		4	C6	5	41153970	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3966314	41153970	139761290	233	44908										
CD180	0	genome.wustl.edu	37	chr5	66478815	66478815	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cacaggaaagcttgacatcaGatagcttaactccccttaga	7	11	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	66478815	66478815	G	C	SNP	CD180	ENST00000256447	human	ensembl	69_37n	-1	known	missense	c.1856	p.S619C	0.002	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061	53	0	0	41	9	18	-	-	-	C	66478815	G	C	66478815	3	2	490	1	0	0	0	0	1	0	0	0	3001	942	33	2	133	2	CD180	5	66478815	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25324845	66478815	114436445	234	44909										
CD180	0	genome.wustl.edu	37	chr5	66479281	66479281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aactggtaggcctgctagaaGatgctgattgctggtatcaa	12	7	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	66479281	66479281	G	A	SNP	CD180	ENST00000256447	human	ensembl	69_37n	-1	known	missense	c.1390	p.L464F	0.245	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061	44	0	0	45	8	15.09	-	-	-	A	66479281	G	A	66479281	3	1	490	1	0	0	0	0	1	0	0	0	3001	942	33	2	599	2	CD180	5	66479281	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	466	66479281	114435979	235	44910										
MRPS36	0	genome.wustl.edu	37	chr5	68513905	68513905	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgggtccggcgccgagggttCgagccttgcggcaaccgtgc	17	13	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	68513905	68513905	C	T	SNP	MRPS36	ENST00000503793	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPS36	HGNC	ENSG00000134056	12	0	0	10	4	28.57	-	-	-	T	68513905	C	T	68513905	1	4	490	0	1	0	0	0	0	0	0	0	9917	899	31	1		1	MRPS36	5	68513905	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2034624	68513905	112401355	236	44911										
MAP1B	0	genome.wustl.edu	37	chr5	71492254	71492254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaggaggctgatgaggaggaCaaagctgaagatgccagaga	17	5	0	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	71492254	71492254	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	silent	c.3072	p.D1024	0.956	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	34	0	0	32	7	17.95	-	-	-	T	71492254	C	T	71492254	2	4	490	1	0	0	0	0	0	0	0	1	9299	477	17	4		4	MAP1B	5	71492254	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2978349	71492254	109423006	237	44912										
AGGF1	0	genome.wustl.edu	37	chr5	76342394	76342394	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgagaaaatcatggagactGatagtgaaccagaggaaggt	13	4	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	76342394	76342394	G	C	SNP	AGGF1	ENST00000312916	human	ensembl	69_37n	1	known	missense	c.1093	p.D365H	1.000	NULL	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252	13	0	0	15	7	31.82	-	-	-	C	76342394	G	C	76342394	3	2	490	1	0	0	0	0	1	0	0	0	382	1290	45	2	1115	2	AGGF1	5	76342394	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4850140	76342394	104572866	238	44913										
SCAMP1	0	genome.wustl.edu	37	chr5	77714654	77714654	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttcctgtcggaccttgtttCtatcaggatttttctgtaga	8	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	77714654	77714654	C	G	SNP	SCAMP1	ENST00000320280	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCAMP1	HGNC	ENSG00000085365	43	0	0	43	5	10.42	-	-	-	G	77714654	C	G	77714654	1	3	490	0	1	0	0	0	0	0	0	0	13957	912	32	2		2	SCAMP1	5	77714654	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1372260	77714654	103200606	239	44914										
POU5F2	0	genome.wustl.edu	37	chr5	93076634	93076634	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgctctctgcttgcccgtctCcacttcccagactgttgcag	8	17	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	93076634	93076634	C	G	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.636	p.W212C	0.993	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	47	0	0	54	6	10	-	-	-	G	93076634	C	G	93076634	3	3	490	1	0	0	0	0	1	0	0	0	12356	856	30	2	354	2	POU5F2	5	93076634	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	15361980	93076634	87838626	240	44915										
DTWD2	0	genome.wustl.edu	37	chr5	118264307	118264307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	catgtaccatcaatgatgatGattgtagaaggataaacagg	10	5	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	118264307	118264307	G	A	SNP	DTWD2	ENST00000510708	human	ensembl	69_37n	-1	known	silent	c.522	p.I174	0.989	pfam_DTW	pfam_DTW	-	no_errors	DTWD2	HGNC	ENSG00000169570	39	0	0	34	8	19.05	-	-	-	A	118264307	G	A	118264307	2	1	490	1	0	0	0	0	0	0	0	1	4827	1280	45	2		2	DTWD2	5	118264307	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25187673	118264307	62650953	241	44916										
AFF4	0	genome.wustl.edu	37	chr5	132270373	132270373	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgctggctactatgtccactCtgtaagcctgaggaccgttt	10	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	132270373	132270373	C	T	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	silent	c.384	p.Q128	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	35	0	0	46	6	11.54	-	-	-	T	132270373	C	T	132270373	2	4	490	1	0	0	0	0	0	0	0	1	359	912	32	2		2	AFF4	5	132270373	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	14006066	132270373	48644887	242	44917										
PHF15	0	genome.wustl.edu	37	chr5	133898055	133898055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctgtgccctatggattcctGaggtgggtgagcgtggaggt	18	7	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	133898055	133898055	G	C	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.898	p.E300Q	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	53	0	0	55	9	14.06	-	-	-	C	133898055	G	C	133898055	3	2	490	1	0	0	0	0	1	0	0	0	11900	1291	45	2	872	2	PHF15	5	133898055	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1627682	133898055	47017205	243	44918										
TGFBI	0	genome.wustl.edu	37	chr5	135383098	135383098	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgagatcgaggacacctttGagacccttcgggtaagggac	13	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	135383098	135383098	G	C	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.760	p.E254Q	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	54	0	0	46	10	17.86	-	-	-	C	135383098	G	C	135383098	3	2	490	1	0	0	0	0	1	0	0	0	15915	1291	45	2	782	2	TGFBI	5	135383098	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1485043	135383098	45532162	244	44919										
KDM3B	0	genome.wustl.edu	37	chr5	137722119	137722119	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcagacacctttggccccaGaggtgggtggagccgaaaac	14	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	137722119	137722119	G	C	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.1189	p.E397Q	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	38	0	0	26	6	18.75	-	-	-	C	137722119	G	C	137722119	3	2	490	1	0	0	0	0	1	0	0	0	8181	943	33	2	1215	2	KDM3B	5	137722119	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2339021	137722119	43193141	245	44920										
PCDHA8	0	genome.wustl.edu	37	chr5	140221572	140221572	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatgggggcaaacctgagctCacaggcactgttcagctgct	13	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	140221572	140221572	C	G	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	silent	c.666	p.L222	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	38	0	0	38	6	13.64	-	-	-	G	140221572	C	G	140221572	2	3	490	1	0	0	0	0	0	0	0	1	11603	813	29	2		2	PCDHA8	5	140221572	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2499453	140221572	40693688	246	44921										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712607	140712607	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcatcagccaggagagctgtGagaaaaagggttttctatca	11	7	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	140712607	140712607	G	C	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.2356	p.E786Q	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	46	0	0	49	7	12.5	-	-	-	C	140712607	G	C	140712607	3	2	490	1	0	0	0	0	1	0	0	0	11623	1291	45	2	2358	2	PCDHGA1	5	140712607	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	491035	140712607	40202653	247	44922										
C5orf54	0	genome.wustl.edu	37	chr5	159821587	159821587	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataggcgatgatttggagctCtccctttgatgaaatttatt	9	6	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	159821587	159821587	C	T	SNP	C5orf54	ENST00000408953	human	ensembl	69_37n	-1	known	missense	c.911	p.R304K	0.960	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	C5orf54	HGNC	ENSG00000221886	25	0	0	23	9	28.12	-	-	-	T	159821587	C	T	159821587	3	4	490	1	0	0	0	0	1	0	0	0	2331	913	32	2	877	2	C5orf54	5	159821587	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	19108980	159821587	21093673	248	44923										
BNIP1	0	genome.wustl.edu	37	chr5	172581376	172581376	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagaatcagagaaacaacttCtactccaggaagtggagaat	9	7	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	172581376	172581376	C	G	SNP	BNIP1	ENST00000231668	human	ensembl	69_37n	1	known	missense	c.358	p.L120V	0.974	NULL	pfam_Sec20	-	no_errors	BNIP1	HGNC	ENSG00000113734	49	0	0	40	5	11.11	-	-	-	G	172581376	C	G	172581376	3	3	490	1	0	0	0	0	1	0	0	0	1481	912	32	2	372	2	BNIP1	5	172581376	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	12759789	172581376	8333884	249	44924										
NOP16	0	genome.wustl.edu	37	chr5	175813933	175813933	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagagaacagagcccttgaGaccagaaggatctttgatga	12	8	1	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	175813933	175813933	G	A	SNP	NOP16	ENST00000502663	human	ensembl	69_37n	-1	known	silent	c.228	p.V76	0.309	NULL	pfam_Ribosome_biogenesis_Nop16	-	no_errors	NOP16	HGNC	ENSG00000048162	49	0	0	54	6	10	-	-	-	A	175813933	G	A	175813933	2	1	490	1	0	0	0	0	0	0	0	1	10609	957	33	2		2	NOP16	5	175813933	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3232557	175813933	5101327	250	44925										
F12	0	genome.wustl.edu	37	chr5	176832169	176832169	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtggaaaaaccggagaagctGaggctcaaagcacttctctg	12	9	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	5	176832169	176832169	G	A	SNP	F12	ENST00000253496	human	ensembl	69_37n	-1	known	nonsense	c.415	p.Q139*	1.000	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_EGF-like_dom,pfam_Fibronectin_type1,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	F12	HGNC	ENSG00000131187	46	0	0	48	6	11.11	-	-	-	A	176832169	G	A	176832169	4	1	490	1	0	0	0	0	0	1	0	0	5376	1299	45	2	1468	2	F12	5	176832169	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1018236	176832169	4083091	251	44926										
FOXF2	0	genome.wustl.edu	37	chr6	1390509	1390509	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tactcgtacatcgcgctcatCgtcatggccatccagagctc	8	15	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	1390509	1390509	C	T	SNP	FOXF2	ENST00000259806	human	ensembl	69_37n	1	known	silent	c.327	p.I109	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273	31	0	0	51	7	12.07	-	-	-	T	1390509	C	T	1390509	2	4	490	1	0	0	0	0	0	0	0	1	6054	874	31	1		1	FOXF2	6	1390509	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		1390509	169724558	252	44927										
SERPINB9	0	genome.wustl.edu	37	chr6	2890790	2890790	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctgtgagtttctcaaaagtGagacttttttccacctgaaa	8	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	2890790	2890790	G	A	SNP	SERPINB9	ENST00000380698	human	ensembl	69_37n	-1	known	silent	c.738	p.L246	0.991	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB9	HGNC	ENSG00000170542	25	0	0	30	9	23.08	-	-	-	A	2890790	G	A	2890790	2	1	490	1	0	0	0	0	0	0	0	1	14196	1277	45	2		2	SERPINB9	6	2890790	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1500281	2890790	168224277	253	44928										
RPP40	0	genome.wustl.edu	37	chr6	4996298	4996298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggacagcaataggttgatatGaaattattaggctcattatt	9	4	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	4996298	4996298	G	C	SNP	RPP40	ENST00000380051	human	ensembl	69_37n	-1	known	missense	c.780	p.F260L	0.986	pfam_RNase_P_Rpp40	pfam_RNase_P_Rpp40	-	no_errors	RPP40	HGNC	ENSG00000124787	26	0	0	25	7	21.88	-	-	-	C	4996298	G	C	4996298	3	2	490	1	0	0	0	0	1	0	0	0	13700	1281	45	2	319	2	RPP40	6	4996298	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2105508	4996298	166118769	254	44929										
TFAP2A	0	genome.wustl.edu	37	chr6	10419816	10419816	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acatctcacctggtcataaaGagctgggttgctacctgccg	10	12	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	10419816	10419816	G	A	SNP	TFAP2A	ENST00000473652	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TFAP2A	HGNC	ENSG00000137203	21	0	0	37	10	21.28	-	-	-	A	10419816	G	A	10419816	1	1	490	0	1	0	0	0	0	0	0	0	15882	957	33	2		2	TFAP2A	6	10419816	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5423518	10419816	160695251	255	44930										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056117	26056117	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggcagctttcttgggcttCgcaaccttggccttctttgg	11	11	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	26056117	26056117	C	A	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	43	0	0	46	8	14.81	-	-	-	A	26056117	C	A	26056117	2	1	490	1	0	0	0	0	0	0	0	1	7175	871	31	3		3	HIST1H1C	6	26056117	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	15636301	26056117	145058950	256	44931										
ZKSCAN4	0	genome.wustl.edu	37	chr6	28219392	28219392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctccaatagcaccaccacctCctccccgctctctggatgct	5	20	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	28219392	28219392	C	G	SNP	ZKSCAN4	ENST00000377294	human	ensembl	69_37n	-1	known	missense	c.367	p.E123Q	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626	34	0	0	52	6	10.34	-	-	-	G	28219392	C	G	28219392	3	3	490	1	0	0	0	0	1	0	0	0	17785	864	30	2	1290	2	ZKSCAN4	6	28219392	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2163275	28219392	142895675	257	44932										
MAS1L	0	genome.wustl.edu	37	chr6	29454735	29454735	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttctgaggctccccacaaaGaaataaatgatagggttggc	10	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	29454735	29454735	G	C	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.945	p.F315L	0.983	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	42	0	0	27	7	20.59	-	-	-	C	29454735	G	C	29454735	3	2	490	1	0	0	0	0	1	0	0	0	9392	933	33	2	193	2	MAS1L	6	29454735	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1235343	29454735	141660332	258	44933										
ABCF1	0	genome.wustl.edu	37	chr6	30553699	30553699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagaagcagaaagaactgctGaaacagtatgagaagcaaga	11	6	0	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	30553699	30553699	G	A	SNP	ABCF1	ENST00000475993	human	ensembl	69_37n	1	known	missense	c.895	p.E299K	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCF1	HGNC	ENSG00000204574	30	0	0	15	13	46.43	-	-	-	A	30553699	G	A	30553699	3	1	490	1	0	0	0	0	1	0	0	0	65	1277	45	2	1710	2	ABCF1	6	30553699	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1098964	30553699	140561368	259	44934										
DDR1	0	genome.wustl.edu	37	chr6	30861152	30861152	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcctgctcctgctgctcatCattgccctcatgctctggcg	8	16	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	30861152	30861152	C	A	SNP	DDR1	ENST00000376575	human	ensembl	69_37n	1	known	silent	c.1299	p.I433	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	72	0	0	103	17	14.17	-	-	-	A	30861152	C	A	30861152	2	1	490	1	0	0	0	0	0	0	0	1	4367	816	29	2		2	DDR1	6	30861152	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	307453	30861152	140253915	260	44935										
TNXB	0	genome.wustl.edu	37	chr6	32039828	32039828	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcctggatcccaaagagcagGaacttgtacttgcgggaggg	14	9	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	32039828	32039828	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.4929	p.F1643	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	43	0	0	41	9	18	-	-	-	A	32039828	G	A	32039828	2	1	490	1	0	0	0	0	0	0	0	1	16441	1165	41	2		2	TNXB	6	32039828	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1178676	32039828	139075239	261	44936										
HLA-DQA1	0	genome.wustl.edu	37	chr6	32609762	32609762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accacagaggttcctgaggtCacagtgttttccaagtctcc	9	12	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	32609762	32609762	C	T	SNP	HLA-DQA1	ENST00000486548	human	ensembl	69_37n	1	putative	missense	c.263	p.S88L	0.930	pfscan_Ig-like	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-DQA1	HGNC	ENSG00000196735	73	0	0	73	17	18.89	-	-	-	T	32609762	C	T	32609762	3	4	490	1	0	0	0	0	1	0	0	0	7255	813	29	2	355	2	HLA-DQA1	6	32609762	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	569934	32609762	138505305	262	44937										
ZBTB22	0	genome.wustl.edu	37	chr6	33283446	33283446	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctgcatgtccaagggaagGagcggtcgaggagggtggga	19	8	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	33283446	33283446	G	C	SNP	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	silent	c.1248	p.L416	0.992	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	60	0	0	61	21	25.61	-	-	-	C	33283446	G	C	33283446	2	2	490	1	0	0	0	0	0	0	0	1	17626	1161	41	2		2	ZBTB22	6	33283446	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	673684	33283446	137831621	263	44938										
ZBTB22	0	genome.wustl.edu	37	chr6	33284490	33284490	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggacagcccgatgagcccgGaactcccggccctgcactct	11	17	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	33284490	33284490	G	A	SNP	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	silent	c.204	p.F68	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	49	0	0	37	6	13.95	-	-	-	A	33284490	G	A	33284490	2	1	490	1	0	0	0	0	0	0	0	1	17626	1165	41	2		2	ZBTB22	6	33284490	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1044	33284490	137830577	264	44939										
SPDEF	0	genome.wustl.edu	37	chr6	34511944	34511944	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccgctggggcttggctgtCaatgaccgggcactgctcag	15	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	34511944	34511944	C	G	SNP	SPDEF	ENST00000374037	human	ensembl	69_37n	-1	known	missense	c.289	p.D97H	0.996	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPDEF	HGNC	ENSG00000124664	50	0	0	47	10	17.54	-	-	-	G	34511944	C	G	34511944	3	3	490	1	0	0	0	0	1	0	0	0	15117	826	29	2	738	2	SPDEF	6	34511944	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1227454	34511944	136603123	265	44940										
ANKS1A	0	genome.wustl.edu	37	chr6	34985612	34985612	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctccgcaccctggtggtgctGaggaaggagaccggagtggg	18	10	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	34985612	34985612	G	A	SNP	ANKS1A	ENST00000360359	human	ensembl	69_37n	1	known	missense	c.1786	p.E596K	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999	31	0	0	41	9	18	-	-	-	A	34985612	G	A	34985612	3	1	490	1	0	0	0	0	1	0	0	0	687	1291	45	2	1828	2	ANKS1A	6	34985612	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	473668	34985612	136129455	266	44941										
STK38	0	genome.wustl.edu	37	chr6	36464500	36464500	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtgttacctgttggcttaaGaatatcagattctggaaact	10	6	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	36464500	36464500	G	C	SNP	STK38	ENST00000229812	human	ensembl	69_37n	-1	known	missense	c.1255	p.L419V	1.000	pfam_Pkinase_C,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38	HGNC	ENSG00000112079	38	0	0	51	7	12.07	-	-	-	C	36464500	G	C	36464500	3	2	490	1	0	0	0	0	1	0	0	0	15394	942	33	2	150	2	STK38	6	36464500	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1478888	36464500	134650567	267	44942										
LRFN2	0	genome.wustl.edu	37	chr6	40400499	40400499	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgaccaggccccggagggtGtcctccccaaggcttggcag	14	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	40400499	40400499	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	silent	c.354	p.D118	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	26	0	0	30	5	14.29	-	-	-	A	40400499	G	A	40400499	2	1	490	1	0	0	0	0	0	0	0	1	9004	1368	48	4		4	LRFN2	6	40400499	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3935999	40400499	130714568	268	44943										
GUCA1B	0	genome.wustl.edu	37	chr6	42156389	42156389	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttatcatagatcttgaatgtCcacttcagcttgtgctccag	7	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	42156389	42156389	C	G	SNP	GUCA1B	ENST00000230361	human	ensembl	69_37n	-1	known	missense	c.288	p.W96C	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1B	HGNC	ENSG00000112599	42	0	0	45	12	21.05	-	-	-	G	42156389	C	G	42156389	3	3	490	1	0	0	0	0	1	0	0	0	6940	856	30	2	326	2	GUCA1B	6	42156389	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1755890	42156389	128958678	269	44944										
UBR2	0	genome.wustl.edu	37	chr6	42626034	42626034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctaccagtcccgtggcagaGacagaaggaaccataatgga	11	11	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	42626034	42626034	G	C	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.3039	p.E1013D	0.419	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	35	0	0	32	4	11.11	-	-	-	C	42626034	G	C	42626034	3	2	490	1	0	0	0	0	1	0	0	0	16999	933	33	2	3295	2	UBR2	6	42626034	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	469645	42626034	128489033	270	44945										
CNPY3	0	genome.wustl.edu	37	chr6	42905863	42905863	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaagagtttgaggaggtgatCgaggactggtacaggaacca	16	5	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	42905863	42905863	C	A	SNP	CNPY3	ENST00000372836	human	ensembl	69_37n	1	known	silent	c.531	p.I177	0.997	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	41	0	0	56	15	21.13	-	-	-	A	42905863	C	A	42905863	2	1	490	1	0	0	0	0	0	0	0	1	3659	874	31	3		3	CNPY3	6	42905863	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	279829	42905863	128209204	271	44946										
ZNF318	0	genome.wustl.edu	37	chr6	43305941	43305941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgagacttctgtacctagaaGttctagaagctgattctgga	10	7	3	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	43305941	43305941	G	A	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.5795	p.T1932I	0.004	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	28	0	0	21	5	19.23	-	-	-	A	43305941	G	A	43305941	3	1	490	1	0	0	0	0	1	0	0	0	17932	1029	36	4	1048	4	ZNF318	6	43305941	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	400078	43305941	127809126	272	44947										
XPO5	0	genome.wustl.edu	37	chr6	43494463	43494463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcactactgtggtcagcaccCttctttgaaacacagcaaac	7	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	43494463	43494463	C	T	SNP	XPO5	ENST00000486936	human	ensembl	69_37n	-1	known	missense	c.130	p.G44R	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	XPO5	HGNC	ENSG00000124571	42	0	0	34	13	27.66	-	-	-	T	43494463	C	T	43494463	3	4	490	1	0	0	0	0	1	0	0	0	17544	680	24	4	695	4	XPO5	6	43494463	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	188522	43494463	127620604	273	44948										
BMP5	0	genome.wustl.edu	37	chr6	55739250	55739250	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggctggctagaggaggactCtgggtggtcagaggagtcgt	19	6	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	55739250	55739250	C	G	SNP	BMP5	ENST00000370830	human	ensembl	69_37n	-1	known	missense	c.414	p.Q138H	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175	66	0	0	50	16	24.24	-	-	-	G	55739250	C	G	55739250	3	3	490	1	0	0	0	0	1	0	0	0	1468	912	32	2	978	2	BMP5	6	55739250	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	12244787	55739250	115375817	274	44949										
DST	0	genome.wustl.edu	37	chr6	56362839	56362839	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggactgatgggctaatacatCattttggagcacctgaaaat	10	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	56362839	56362839	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.19816	p.D6606H	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	52	0	0	43	14	24.56	-	-	-	G	56362839	C	G	56362839	3	3	490	1	0	0	0	0	1	0	0	0	4818	826	29	2	3567	2	DST	6	56362839	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	623589	56362839	114752228	275	44950										
DST	0	genome.wustl.edu	37	chr6	56462600	56462600	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccaacttgcccatcaacatCagtctccaacaggttaccat	4	15	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	56462600	56462600	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.12040	p.D4014H	0.961	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	77	0	0	87	22	20	-	-	-	G	56462600	C	G	56462600	3	3	490	1	0	0	0	0	1	0	0	0	4818	826	29	2	11479	2	DST	6	56462600	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	99761	56462600	114652467	276	44951										
EYS	0	genome.wustl.edu	37	chr6	65301429	65301429	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taagcaggaatccacgggagAgtaatgactgcctgtttagc	12	8	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	65301429	65301429	A	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.4331	p.L1444H	0.998	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	19	0	0	17	8	32	-	-	-	T	65301429	A	T	65301429	3	4	490	1	0	0	0	0	1	0	0	0	5369	304	11	5	5020	5	EYS	6	65301429	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	8838829	65301429	105813638	277	44952										
SENP6	0	genome.wustl.edu	37	chr6	76385692	76385692	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagcaattccagcagtttatCaaaagctgagcatccaactg	7	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	76385692	76385692	C	G	SNP	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	missense	c.1543	p.Q515E	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	41	0	0	26	13	33.33	-	-	-	G	76385692	C	G	76385692	3	3	490	1	0	0	0	0	1	0	0	0	14138	827	29	2	1593	2	SENP6	6	76385692	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11084263	76385692	94729375	278	44953										
SYNCRIP	0	genome.wustl.edu	37	chr6	86332351	86332351	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attcaagaaagcaaaagcctCtgttttttttcttgtcatcc	5	9	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	86332351	86332351	C	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	missense	c.857	p.R286K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	50	0	0	52	13	20	-	-	-	T	86332351	C	T	86332351	3	4	490	1	0	0	0	0	1	0	0	0	15536	913	32	2	1076	2	SYNCRIP	6	86332351	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9946659	86332351	84782716	279	44954										
ZNF292	0	genome.wustl.edu	37	chr6	87928331	87928331	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taggtagctcatgaaaagctGatggagaatggcagctgtga	14	5	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	87928331	87928331	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	silent	c.420	p.L140	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	50	0	0	29	13	30.95	-	-	-	A	87928331	G	A	87928331	2	1	490	1	0	0	0	0	0	0	0	1	17922	1277	45	2		2	ZNF292	6	87928331	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1595980	87928331	83186736	280	44955										
RARS2	0	genome.wustl.edu	37	chr6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctggcaagcaatagcgcggcGaaagccgcacgccatgtcca	12	14	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	88299660	88299660	G	A	SNP	RARS2	ENST00000369536	human	ensembl	69_37n	-1	known	missense	c.16	p.R6C	0.853	superfamily_Arg-tRNA-synth_N	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS2	HGNC	ENSG00000146282	66	0	0	91	41	31.06	-	-	-	A	88299660	G	A	88299660	3	1	490	1	0	0	0	0	1	0	0	0	13142	1058	37	1	1800	1	RARS2	6	88299660	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	371329	88299660	82815407	281	44956										
USP45	0	genome.wustl.edu	37	chr6	99887703	99887703	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taagtggaaaatctacatgtCtgtttactttacgaagactc	7	7	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	99887703	99887703	C	T	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.2102	p.R701K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	48	0	0	21	15	41.67	-	-	-	T	99887703	C	T	99887703	3	4	490	1	0	0	0	0	1	0	0	0	17173	913	32	2	354	2	USP45	6	99887703	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11588043	99887703	71227364	282	44957										
SIM1	0	genome.wustl.edu	37	chr6	100896443	100896443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatctccgtgacggcgctggGaggcagcgagtggcccacgg	18	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	100896443	100896443	G	C	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.655	p.P219A	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	57	0	0	49	22	30.99	-	-	-	C	100896443	G	C	100896443	3	2	490	1	0	0	0	0	1	0	0	0	14412	1174	41	2	1669	2	SIM1	6	100896443	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1008740	100896443	70218624	283	44958										
ASCC3	0	genome.wustl.edu	37	chr6	100957291	100957291	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgccaggtcagtcagggaatCagagaccttggtgttgacct	13	9	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	100957291	100957291	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.6580	p.D2194N	0.998	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	40	0	0	54	11	16.92	-	-	-	T	100957291	C	T	100957291	3	4	490	1	0	0	0	0	1	0	0	0	1037	826	29	2	32	2	ASCC3	6	100957291	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	60848	100957291	70157776	284	44959										
LIN28B	0	genome.wustl.edu	37	chr6	105406098	105406098	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgcgcatgggatttggattCatctccatgataaaccgaga	11	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	105406098	105406098	C	A	SNP	LIN28B	ENST00000345080	human	ensembl	69_37n	1	known	missense	c.135	p.F45L	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,prints_CSP_DNA-bd,pfscan_Znf_CCHC	-	no_errors	LIN28B	HGNC	ENSG00000187772	88	0	0	68	13	16.05	-	-	-	A	105406098	C	A	105406098	3	1	490	1	0	0	0	0	1	0	0	0	8862	825	29	2	141	2	LIN28B	6	105406098	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4448807	105406098	65708969	285	44960										
OSTM1	0	genome.wustl.edu	37	chr6	108395499	108395499	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcttgctgacgacctgttgGaagagggggtagcaggtctg	16	7	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	108395499	108395499	G	A	SNP	OSTM1	ENST00000193322	human	ensembl	69_37n	-1	known	silent	c.357	p.F119	1.000	pfam_Osteopetrosis-assoc_TM_1	pfam_Osteopetrosis-assoc_TM_1	-	no_errors	OSTM1	HGNC	ENSG00000081087	12	0	0	13	5	27.78	-	-	-	A	108395499	G	A	108395499	2	1	490	1	0	0	0	0	0	0	0	1	11371	1165	41	2		2	OSTM1	6	108395499	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2989401	108395499	62719568	286	44961										
PPIL6	0	genome.wustl.edu	37	chr6	109757394	109757394	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aatttggatggatgattattCttcagattctggatttcgaa	9	4	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	109757394	109757394	C	G	SNP	PPIL6	ENST00000521072	human	ensembl	69_37n	-1	known	missense	c.144	p.K48N	0.851	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250	45	0	0	37	17	31.48	-	-	-	G	109757394	C	G	109757394	3	3	490	1	0	0	0	0	1	0	0	0	12408	912	32	2	901	2	PPIL6	6	109757394	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1361895	109757394	61357673	287	44962										
CDC40	0	genome.wustl.edu	37	chr6	110501679	110501679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gattgcagctctggccgcttCctatggttcgggttcagggt	14	10	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	110501679	110501679	C	T	SNP	CDC40	ENST00000307731	human	ensembl	69_37n	1	known	missense	c.32	p.S11F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	35	0	0	34	15	30.61	-	-	-	T	110501679	C	T	110501679	3	4	490	1	0	0	0	0	1	0	0	0	3099	855	30	2	34	2	CDC40	6	110501679	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	744285	110501679	60613388	288	44963										
CDK19	0	genome.wustl.edu	37	chr6	111136325	111136325	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccgccgccagcttcgccttGaaatcataatccattgtctg	7	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	111136325	111136325	G	C	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.15	p.F5L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	81	0	0	108	26	19.4	-	-	-	C	111136325	G	C	111136325	3	2	490	1	0	0	0	0	1	0	0	0	3164	1281	45	2	1545	2	CDK19	6	111136325	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	634646	111136325	59978742	289	44964										
LAMA4	0	genome.wustl.edu	37	chr6	112450216	112450216	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcaatgggacactcataaaGagaagtgtggaccttttcag	10	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	112450216	112450216	G	C	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.4195	p.L1399V	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	58	0	0	39	18	31.58	-	-	-	C	112450216	G	C	112450216	3	2	490	1	0	0	0	0	1	0	0	0	8662	942	33	2	1312	2	LAMA4	6	112450216	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1313891	112450216	58664851	290	44965										
DCBLD1	0	genome.wustl.edu	37	chr6	117869086	117869086	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcagattaccagcagcccctCatgattggcaccgggacagt	10	13	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	117869086	117869086	C	T	SNP	DCBLD1	ENST00000338728	human	ensembl	69_37n	1	known	silent	c.1632	p.L544	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465	28	0	0	36	13	26.53	-	-	-	T	117869086	C	T	117869086	2	4	490	1	0	0	0	0	0	0	0	1	4311	841	29	2		2	DCBLD1	6	117869086	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5418870	117869086	53245981	291	44966										
SLC35F1	0	genome.wustl.edu	37	chr6	118596740	118596740	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgagtggaattcctgggaatGattggtctctttggagcatt	13	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	118596740	118596740	G	A	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	missense	c.756	p.M252I	1.000	pfam_DUF914_euk,pfam_DMT	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	90	0	0	83	15	15.31	-	-	-	A	118596740	G	A	118596740	3	1	490	1	0	0	0	0	1	0	0	0	14677	1290	45	2	774	2	SLC35F1	6	118596740	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	727654	118596740	52518327	292	44967										
C6orf58	0	genome.wustl.edu	37	chr6	127901510	127901510	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggcttttgcccccacccaaGaatgagaggaagttttgtta	10	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	127901510	127901510	G	A	SNP	C6orf58	ENST00000329722	human	ensembl	69_37n	1	known	silent	c.489	p.K163	0.002	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530	48	0	0	46	21	31.34	-	-	-	A	127901510	G	A	127901510	2	1	490	1	0	0	0	0	0	0	0	1	2389	933	33	2		2	C6orf58	6	127901510	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9304770	127901510	43213557	293	44968										
LAMA2	0	genome.wustl.edu	37	chr6	129608999	129608999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttcttgccttaggtgtgcaGaaggctattttggacaaccc	10	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	129608999	129608999	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.2545	p.E849K	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	42	0	0	41	5	10.87	-	-	-	A	129608999	G	A	129608999	3	1	490	1	0	0	0	0	1	0	0	0	8660	943	33	2	2619	2	LAMA2	6	129608999	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1707489	129608999	41506068	294	44969										
VNN2	0	genome.wustl.edu	37	chr6	133072459	133072459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgaagttgaacccatccctgGaaataaatcccctgaaagtg	8	10	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	133072459	133072459	G	A	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.1025	p.S342F	0.000	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	39	0	0	31	4	11.43	-	-	-	A	133072459	G	A	133072459	3	1	490	1	0	0	0	0	1	0	0	0	17280	1174	41	2	549	2	VNN2	6	133072459	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3463460	133072459	38042608	295	44970										
UTRN	0	genome.wustl.edu	37	chr6	144783990	144783990	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaggaaattgctctcacactCagagcttttgaggtaaatcc	9	9	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	144783990	144783990	C	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.3054	p.L1018	0.945	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	51	0	0	39	10	20.41	-	-	-	T	144783990	C	T	144783990	2	4	490	1	0	0	0	0	0	0	0	1	17200	813	29	2		2	UTRN	6	144783990	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11711531	144783990	26331077	296	44971										
SYNE1	0	genome.wustl.edu	37	chr6	152510425	152510425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccactgcctttgcagaagctCtacgcgttcattaagaatgg	9	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	152510425	152510425	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.23263	p.E7755Q	0.996	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	68	0	0	44	12	21.43	-	-	-	G	152510425	C	G	152510425	3	3	490	1	0	0	0	0	1	0	0	0	15537	922	32	2	3279	2	SYNE1	6	152510425	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7726435	152510425	18604642	297	44972										
ARID1B	0	genome.wustl.edu	37	chr6	157528715	157528715	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggggacgcactagcagcaaGggccatagctgtgcagaaag	15	9	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	157528715	157528715	G	C	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.6560	p.R2187T	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	36	0	0	35	6	14.63	-	-	-	C	157528715	G	C	157528715	3	2	490	1	0	0	0	0	1	0	0	0	916	1000	35	4	6518	4	ARID1B	6	157528715	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5018290	157528715	13586352	298	44973										
RSPH3	0	genome.wustl.edu	37	chr6	159420602	159420602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtccgggggctgactgcctCgctttcggtggagcttggct	16	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	159420602	159420602	C	T	SNP	RSPH3	ENST00000252655	human	ensembl	69_37n	-1	known	missense	c.407	p.R136Q	0.000	NULL	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363	61	0	0	84	14	14.29	-	-	-	T	159420602	C	T	159420602	3	4	490	1	0	0	0	0	1	0	0	0	13791	884	31	1	1307	1	RSPH3	6	159420602	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1891887	159420602	11694465	299	44974										
WDR27	0	genome.wustl.edu	37	chr6	170052035	170052035	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agttcactcactgtggtgctGacgcataaccagatgaccta	9	11	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	6	170052035	170052035	G	A	SNP	WDR27	ENST00000441385	human	ensembl	69_37n	-1	putative	nonsense	c.373	p.Q125*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR27	HGNC	ENSG00000184465	41	0	0	37	12	24.49	-	-	-	A	170052035	G	A	170052035	4	1	490	1	0	0	0	0	0	1	0	0	17381	1294	45	2	1149	2	WDR27	6	170052035	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10631433	170052035	1063032	300	44975										
MICALL2	0	genome.wustl.edu	37	chr7	1474033	1474033	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtttctttattgagaccacaGacggtagcgcaggtccctgc	11	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	1474033	1474033	G	A	SNP	MICALL2	ENST00000471899	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MICALL2	HGNC	ENSG00000164877	36	0	0	41	11	21.15	-	-	-	A	1474033	G	A	1474033	1	1	490	0	1	0	0	0	0	0	0	0	9645	957	33	2		2	MICALL2	7	1474033	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		1474033	157664630	301	44976										
INTS1	0	genome.wustl.edu	37	chr7	1539236	1539236	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagtgagggctgtccacccaGatccgctcccccagggagtc	12	16	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	1539236	1539236	G	A	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.1101	p.I367	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	56	0	0	83	12	12.63	-	-	-	A	1539236	G	A	1539236	2	1	490	1	0	0	0	0	0	0	0	1	7829	932	33	2		2	INTS1	7	1539236	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	65203	1539236	157599427	302	44977										
SDK1	0	genome.wustl.edu	37	chr7	4213923	4213923	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actacagggagctggagtatGaagccgggtcaggcactgag	16	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	4213923	4213923	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.4870	p.E1624K	0.956	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	29	0	0	45	9	16.67	-	-	-	A	4213923	G	A	4213923	3	1	490	1	0	0	0	0	1	0	0	0	14056	1291	45	2	5000	2	SDK1	7	4213923	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2674687	4213923	154924740	303	44978										
ZNF12	0	genome.wustl.edu	37	chr7	6731349	6731349	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccacattcactacacttgtaGagtttcacacctgtgtgaat	6	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	6731349	6731349	G	C	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	silent	c.1224	p.L408	0.034	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	21	0	0	26	8	23.53	-	-	-	C	6731349	G	C	6731349	2	2	490	1	0	0	0	0	0	0	0	1	17814	929	33	2		2	ZNF12	7	6731349	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2517426	6731349	152407314	304	44979										
COL28A1	0	genome.wustl.edu	37	chr7	7410430	7410430	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgacatcccaaatccaggttGaggtgacgatgaaccaaaaa	9	9	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	7410430	7410430	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	nonsense	c.2992	p.Q998*	0.621	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	37	0	0	41	7	14.58	-	-	-	A	7410430	G	A	7410430	4	1	490	1	0	0	0	0	0	1	0	0	3716	1299	45	2	397	2	COL28A1	7	7410430	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	679081	7410430	151728233	305	44980										
HOXA10	0	genome.wustl.edu	37	chr7	27211758	27211758	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccgaccactctttgccgtGagccagttggctgcgttttc	10	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	27211758	27211758	G	A	SNP	HOXA10	ENST00000283921	human	ensembl	69_37n	-1	known	silent	c.993	p.L331	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA10	HGNC	ENSG00000253293	23	0	0	26	9	25.71	-	-	-	A	27211758	G	A	27211758	2	1	490	1	0	0	0	0	0	0	0	1	7340	1277	45	2		2	HOXA10	7	27211758	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	19801328	27211758	131926905	306	44981										
AVL9	0	genome.wustl.edu	37	chr7	32535327	32535327	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccgcggcggccgcccatggaGaaggccaggagaggcgggga	20	12	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	32535327	32535327	G	A	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	silent	c.6	p.E2	0.993	NULL	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	22	0	0	15	10	40	-	-	-	A	32535327	G	A	32535327	2	1	490	1	0	0	0	0	0	0	0	1	1232	933	33	2		2	AVL9	7	32535327	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5323569	32535327	126603336	307	44982										
ANLN	0	genome.wustl.edu	37	chr7	36446159	36446159	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcgtctttggttaatgcctCaatttccagctctgtggtaa	9	9	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	36446159	36446159	C	G	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	nonsense	c.857	p.S286*	0.013	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	91	0	0	112	14	11.11	-	-	-	G	36446159	C	G	36446159	4	3	490	1	0	0	0	0	0	1	0	0	693	838	29	2	871	2	ANLN	7	36446159	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3910832	36446159	122692504	308	44983										
POU6F2	0	genome.wustl.edu	37	chr7	39503959	39503959	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcttgagcggtggatggctGaggctgaggcccgccatcga	17	10	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	39503959	39503959	G	A	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	missense	c.1750	p.E584K	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	32	0	0	38	14	26.92	-	-	-	A	39503959	G	A	39503959	3	1	490	1	0	0	0	0	1	0	0	0	12358	1291	45	2	1788	2	POU6F2	7	39503959	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3057800	39503959	119634704	309	44984										
NPC1L1	0	genome.wustl.edu	37	chr7	44573386	44573386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctgcacaacagcatgctggGagccaccctgcctagggctc	12	15	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	44573386	44573386	G	A	SNP	NPC1L1	ENST00000289547	human	ensembl	69_37n	-1	known	missense	c.2233	p.P745S	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	28	0	0	28	8	22.22	-	-	-	A	44573386	G	A	44573386	3	1	490	1	0	0	0	0	1	0	0	0	10643	1174	41	2	1902	2	NPC1L1	7	44573386	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5069427	44573386	114565277	310	44985										
TNS3	0	genome.wustl.edu	37	chr7	47408074	47408074	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagccattggcctggctaccGagggcgttcatgtgggtagg	17	9	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	47408074	47408074	G	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.2169	p.L723	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	65	0	0	99	11	10	-	-	-	A	47408074	G	A	47408074	2	1	490	1	0	0	0	0	0	0	0	1	16439	1045	37	1		1	TNS3	7	47408074	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2834688	47408074	111730589	311	44986										
TRIM50	0	genome.wustl.edu	37	chr7	72738405	72738405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accttcatgcggctgtagacGgtggagacgggcgtgaccgg	17	10	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	72738405	72738405	G	A	SNP	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	silent	c.381	p.T127	0.984	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	111	0	0	108	27	20	-	-	-	A	72738405	G	A	72738405	2	1	490	1	0	0	0	0	0	0	0	1	16622	1103	39	1		1	TRIM50	7	72738405	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25330331	72738405	86400258	312	44987										
CLIP2	0	genome.wustl.edu	37	chr7	73800910	73800910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagccttgacctcccagaccGagatgctcagggcccaagta	10	15	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	73800910	73800910	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.2539	p.E847K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	28	0	0	33	13	28.26	-	-	-	A	73800910	G	A	73800910	3	1	490	1	0	0	0	0	1	0	0	0	3563	1059	37	1	2581	1	CLIP2	7	73800910	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1062505	73800910	85337753	313	44988										
NCF1	0	genome.wustl.edu	37	chr7	74202954	74202954	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcggtcgcggaagcgcctCagccaggacgcctatcgccg	14	16	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	74202954	74202954	C	T	SNP	NCF1	ENST00000289473	human	ensembl	69_37n	1	known	silent	c.957	p.L319	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_NADPH_oxidase_p47Phox_C,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_P47PHOX,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF1	HGNC	ENSG00000158517	63	0	0	66	9	12	-	-	-	T	74202954	C	T	74202954	2	4	490	1	0	0	0	0	0	0	0	1	10288	813	29	2		2	NCF1	7	74202954	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	402044	74202954	84935709	314	44989										
ADAM22	0	genome.wustl.edu	37	chr7	87743932	87743932	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacgggaaccacacatatctCattgagccagaagaaaatga	9	9	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	87743932	87743932	C	G	SNP	ADAM22	ENST00000265727	human	ensembl	69_37n	1	known	silent	c.507	p.L169	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM22	HGNC	ENSG00000008277	42	0	0	41	9	18	-	-	-	G	87743932	C	G	87743932	2	3	490	1	0	0	0	0	0	0	0	1	244	813	29	2		2	ADAM22	7	87743932	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	13540978	87743932	71394731	315	44990										
GTPBP10	0	genome.wustl.edu	37	chr7	90014312	90014312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaaggaatcgaagaattaaaGaattgtataagaaagtcact	9	3	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	90014312	90014312	G	C	SNP	GTPBP10	ENST00000222511	human	ensembl	69_37n	1	known	missense	c.1008	p.K336N	0.340	pfam_ProtSyn_GTP-bd,pirsf_GTP-bd_Obg/CgtA	pfam_GTP_binding_domain,pfam_GTP1_OBG_dom,pfam_Fe2_transport_prot_B_N,pfam_ProtSyn_GTP-bd,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain	-	no_errors	GTPBP10	HGNC	ENSG00000105793	29	0	0	35	4	10.26	-	-	-	C	90014312	G	C	90014312	3	2	490	1	0	0	0	0	1	0	0	0	6930	933	33	2	1046	2	GTPBP10	7	90014312	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2270380	90014312	69124351	316	44991										
FZD1	0	genome.wustl.edu	37	chr7	90895958	90895958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctcacctccaggcgggcgGaggcgccccgccgcacccgc	13	22	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	90895958	90895958	G	A	SNP	FZD1	ENST00000287934	human	ensembl	69_37n	1	known	missense	c.1763	p.G588E	0.839	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240	37	0	0	37	7	15.91	-	-	-	A	90895958	G	A	90895958	3	1	490	1	0	0	0	0	1	0	0	0	6177	1174	41	2	1765	2	FZD1	7	90895958	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	881646	90895958	68242705	317	44992										
ZKSCAN5	0	genome.wustl.edu	37	chr7	99103904	99103904	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgctctgctgtgagtggctGaggcccgagctgcacacgaa	15	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	99103904	99103904	G	A	SNP	ZKSCAN5	ENST00000326775	human	ensembl	69_37n	1	known	silent	c.237	p.L79	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652	40	0	0	53	6	10.17	-	-	-	A	99103904	G	A	99103904	2	1	490	1	0	0	0	0	0	0	0	1	17786	1277	45	2		2	ZKSCAN5	7	99103904	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8207946	99103904	60034759	318	44993										
AZGP1	0	genome.wustl.edu	37	chr7	99565725	99565725	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttgcctgagctcctagcctGagatcgtcttttattctggg	11	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	99565725	99565725	G	C	SNP	AZGP1	ENST00000411734	human	ensembl	69_37n	-1	putative	silent	c.657	p.L219	0.007	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_errors	AZGP1	HGNC	ENSG00000160862	120	0	0	100	21	17.21	-	-	-	C	99565725	G	C	99565725	2	2	490	1	0	0	0	0	0	0	0	1	1243	1305	45	2		2	AZGP1	7	99565725	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	461821	99565725	59572938	319	44994										
MBLAC1	0	genome.wustl.edu	37	chr7	99725743	99725743	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgagtgttaagggaagcctCgcagcccgagacggagggtg	17	9	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	99725743	99725743	C	G	SNP	MBLAC1	ENST00000398075	human	ensembl	69_37n	1	known	missense	c.725	p.S242W	0.000	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	MBLAC1	HGNC	ENSG00000214309	42	0	0	46	9	16.36	-	-	-	G	99725743	C	G	99725743	3	3	490	1	0	0	0	0	1	0	0	0	9422	893	31	3	727	3	MBLAC1	7	99725743	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	160018	99725743	59412920	320	44995										
SRRT	0	genome.wustl.edu	37	chr7	100479731	100479731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccgcccgtgatgaagaccttCaaggagtttctcctctccct	8	15	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	100479731	100479731	C	G	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.456	p.F152L	1.000	pfam_DUF3546	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	60	0	0	62	11	15.07	-	-	-	G	100479731	C	G	100479731	3	3	490	1	0	0	0	0	1	0	0	0	15263	825	29	2	470	2	SRRT	7	100479731	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	753988	100479731	58658932	321	44996										
MUC17	0	genome.wustl.edu	37	chr7	100683067	100683067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acttctactgaagccagttcCtctcctacaactgctgaagt	6	13	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	100683067	100683067	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.8370	p.S2790	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	69	0	0	75	15	16.67	-	-	-	T	100683067	C	T	100683067	2	4	490	1	0	0	0	0	0	0	0	1	10046	668	24	4		4	MUC17	7	100683067	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	203336	100683067	58455596	322	44997										
SERPINE1	0	genome.wustl.edu	37	chr7	100773724	100773724	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagggcatggcccccgccctCcggcatctgtacaaggagct	12	15	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	100773724	100773724	C	T	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	silent	c.294	p.L98	0.961	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	51	0	0	49	8	14.04	-	-	-	T	100773724	C	T	100773724	2	4	490	1	0	0	0	0	0	0	0	1	14199	842	30	2		2	SERPINE1	7	100773724	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	90657	100773724	58364939	323	44998										
SH2B2	0	genome.wustl.edu	37	chr7	101943912	101943912	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcccggactggcggcagttCtgcgagctgcatgcgcaggc	16	13	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	101943912	101943912	C	T	SNP	SH2B2	ENST00000536178	human	ensembl	69_37n	1	known	silent	c.207	p.F69	1.000	pfam_Phe_ZIP,superfamily_Phe_ZIP	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH2B2	HGNC	ENSG00000160999	11	0	0	11	7	38.89	-	-	-	T	101943912	C	T	101943912	2	4	490	1	0	0	0	0	0	0	0	1	14316	912	32	2		2	SH2B2	7	101943912	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1170188	101943912	57194751	324	44999										
DNAJC2	0	genome.wustl.edu	37	chr7	102956214	102956214	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaaaagcaaaatttaccttCaaatcgttctgaaggcgttg	8	7	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	102956214	102956214	C	G	SNP	DNAJC2	ENST00000379263	human	ensembl	69_37n	-1	known	missense	c.1633	p.E545Q	1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N	-	no_errors	DNAJC2	HGNC	ENSG00000105821	77	0	0	50	10	16.67	-	-	-	G	102956214	C	G	102956214	3	3	490	1	0	0	0	0	1	0	0	0	4674	835	29	2	244	2	DNAJC2	7	102956214	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1012302	102956214	56182449	325	45000										
MLL5	0	genome.wustl.edu	37	chr7	104748225	104748225	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataagtgagtcaaagtgcctGatgcaggatgatactagagg	13	5	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	104748225	104748225	G	A	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	silent	c.3321	p.L1107	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	75	0	0	66	9	12	-	-	-	A	104748225	G	A	104748225	2	1	490	1	0	0	0	0	0	0	0	1	9695	1277	45	2		2	MLL5	7	104748225	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1792011	104748225	54390438	326	45001										
PIK3CG	0	genome.wustl.edu	37	chr7	106526648	106526648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtttcctgggcattaataaaGagagagtgccatttgtgcta	11	6	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	106526648	106526648	G	C	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	missense	c.2941	p.E981Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	19	0	0	19	4	17.39	-	-	-	C	106526648	G	C	106526648	3	2	490	1	0	0	0	0	1	0	0	0	11990	943	33	2	2975	2	PIK3CG	7	106526648	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1778423	106526648	52612015	327	45002										
SLC26A4	0	genome.wustl.edu	37	chr7	107329554	107329554	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcggagatgctggctgcatCattttccatcgctgtggtgg	13	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	107329554	107329554	C	G	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	nonsense	c.1058	p.S353*	0.923	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	65	0	0	60	10	14.29	-	-	-	G	107329554	C	G	107329554	4	3	490	1	0	0	0	0	0	1	0	0	14608	838	29	2	1088	2	SLC26A4	7	107329554	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	802906	107329554	51809109	328	45003										
CPA1	0	genome.wustl.edu	37	chr7	130021575	130021575	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttctggagtcccacggcatCagctatgagaccatgatcga	10	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	130021575	130021575	C	A	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	silent	c.252	p.I84	0.025	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	52	0	0	54	8	12.9	-	-	-	A	130021575	C	A	130021575	2	1	490	1	0	0	0	0	0	0	0	1	3819	816	29	2		2	CPA1	7	130021575	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	22692021	130021575	29117088	329	45004										
TRIM24	0	genome.wustl.edu	37	chr7	138269544	138269544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaattattttgaagaacttCtaaagaacctctatccagaa	4	7	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	138269544	138269544	C	G	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	missense	c.3001	p.L1001V	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	45	0	0	25	4	13.79	-	-	-	G	138269544	C	G	138269544	3	3	490	1	0	0	0	0	1	0	0	0	16594	912	32	2	3075	2	TRIM24	7	138269544	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8247969	138269544	20869119	330	45005										
MGAM	0	genome.wustl.edu	37	chr7	141781887	141781887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accttcaatgacatgtttatCcgcatctccacccgccttcc	4	17	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	141781887	141781887	C	G	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	missense	c.6051	p.I2017M	0.909	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	32	0	0	34	6	15	-	-	-	G	141781887	C	G	141781887	3	3	490	1	0	0	0	0	1	0	0	0	9612	870	30	2		2	MGAM	7	141781887	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3512343	141781887	17356776	331	45006										
DNAJB6	0	genome.wustl.edu	37	chr7	157208808	157208808	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actagaccggacttgaggcaCgcggtgcacccccagacgct	12	15	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	157208808	157208808	C	T	SNP	DNAJB6	ENST00000494267	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	DNAJB6	HGNC	ENSG00000105993	31	0	0	31	6	16.22	-	-	-	T	157208808	C	T	157208808	1	4	490	0	1	0	0	0	0	0	0	0	4659	551	19	1		1	DNAJB6	7	157208808	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	15426921	157208808	1929855	332	45007										
WDR60	0	genome.wustl.edu	37	chr7	158719112	158719112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaaatgtcaggtttgtccttCcacatcgcttccttggatga	9	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	7	158719112	158719112	C	T	SNP	WDR60	ENST00000444851	human	ensembl	69_37n	1	known	missense	c.1549	p.P517S	1.000	NULL	NULL	-	no_start_codon	WDR60	HGNC	ENSG00000126870	58	0	0	41	7	14.58	-	-	-	T	158719112	C	T	158719112	3	4	490	1	0	0	0	0	1	0	0	0	17408	854	30	2	2465	2	WDR60	7	158719112	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1510304	158719112	419551	333	45008										
LPL	0	genome.wustl.edu	37	chr8	19797005	19797005	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccgtgtggctccagagtctGaccgcctcccgcggaggggt	16	14	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	19797005	19797005	G	A	SNP	LPL	ENST00000311322	human	ensembl	69_37n	1	known	silent	c.54	p.L18	0.967	pirsf_Lipoprotein_lipase_LIPH	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_Lipo_Lipase,prints_Lipase,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445	17	0	0	20	5	20	-	-	-	A	19797005	G	A	19797005	2	1	490	1	0	0	0	0	0	0	0	1	8987	1277	45	2		2	LPL	8	19797005	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		19797005	126567017	334	45009										
GFRA2	0	genome.wustl.edu	37	chr8	21560387	21560387	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cactgaggtcatctggcaaaGaaggcgtcttctccacccga	10	13	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	21560387	21560387	G	C	SNP	GFRA2	ENST00000517328	human	ensembl	69_37n	-1	known	missense	c.1148	p.S383C	0.999	pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt_a2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546	74	0	0	54	11	16.92	-	-	-	C	21560387	G	C	21560387	3	2	490	1	0	0	0	0	1	0	0	0	6400	942	33	2	258	2	GFRA2	8	21560387	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1763382	21560387	124803635	335	45010										
DOCK5	0	genome.wustl.edu	37	chr8	25237860	25237860	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agctgagcaaagagttggctGagacttacgaaagcaaagta	12	6	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	25237860	25237860	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	nonsense	c.3976	p.E1326*	0.994	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	46	0	0	28	8	21.62	-	-	-	T	25237860	G	T	25237860	4	4	490	1	0	0	0	0	0	1	0	0	4725	1291	45	2	4130	2	DOCK5	8	25237860	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3677473	25237860	121126162	336	45011										
GTF2E2	0	genome.wustl.edu	37	chr8	30492575	30492575	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtaattcacaatcttagcaaGaacaccaaacttatatccag	4	10	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	30492575	30492575	G	C	SNP	GTF2E2	ENST00000355904	human	ensembl	69_37n	-1	known	missense	c.232	p.L78V	1.000	pfam_TFIIE_bsu_DNA-bd,pirsf_TFIIE-bsu	pfam_TFIIE_bsu_DNA-bd,pirsf_TFIIE-bsu	-	no_errors	GTF2E2	HGNC	ENSG00000197265	20	0	0	24	4	14.29	-	-	-	C	30492575	G	C	30492575	3	2	490	1	0	0	0	0	1	0	0	0	6908	942	33	2	667	2	GTF2E2	8	30492575	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5254715	30492575	115871447	337	45012										
GSR	0	genome.wustl.edu	37	chr8	30553915	30553915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accttatcatgccgtatcatCagtgatgtcttagaacccag	7	11	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	30553915	30553915	C	G	SNP	GSR	ENST00000520888	human	ensembl	69_37n	-1	novel	missense	c.637	p.D213H	0.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Hg_reductase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase	-	pseudogene:no_stop_codon	GSR	HGNC	ENSG00000104687	30	0	0	19	7	26.92	-	-	-	G	30553915	C	G	30553915	3	3	490	1	0	0	0	0	1	0	0	0	6879	813	29	2	819	2	GSR	8	30553915	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	61340	30553915	115810107	338	45013										
NRG1	0	genome.wustl.edu	37	chr8	32621719	32621719	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcccagagcagtaactcagaGagtgaaacagaagatgaaag	11	7	1	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	32621719	32621719	G	A	SNP	NRG1	ENST00000338921	human	ensembl	69_37n	1	known	silent	c.1746	p.E582	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EGF-like,pfscan_EG-like_dom,pfscan_Ig-like,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168	32	0	0	18	5	21.74	-	-	-	A	32621719	G	A	32621719	2	1	490	1	0	0	0	0	0	0	0	1	10720	933	33	2		2	NRG1	8	32621719	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2067804	32621719	113742303	339	45014										
KCNU1	0	genome.wustl.edu	37	chr8	36666298	36666298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tacctggttcacagctgcggGattcattcacctggtaagca	10	11	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	36666298	36666298	G	A	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.719	p.G240E	1.000	pfam_Ion_trans_2	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	83	0	0	71	8	10.13	-	-	-	A	36666298	G	A	36666298	3	1	490	1	0	0	0	0	1	0	0	0	8147	1174	41	2	745	2	KCNU1	8	36666298	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4044579	36666298	109697724	340	45015										
GPR124	0	genome.wustl.edu	37	chr8	37690590	37690590	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctgcagtatcccttcacctCagtgcccctgggcgggggtg	13	15	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	37690590	37690590	C	T	SNP	GPR124	ENST00000412232	human	ensembl	69_37n	1	known	missense	c.1160	p.S387L	0.998	pfam_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR124	HGNC	ENSG00000020181	49	0	0	65	11	14.47	-	-	-	T	37690590	C	T	37690590	3	4	490	1	0	0	0	0	1	0	0	0	6688	838	29	2	1173	2	GPR124	8	37690590	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1024292	37690590	108673432	341	45016										
ADRB3	0	genome.wustl.edu	37	chr8	37823802	37823802	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggagtctcggagtccaggcGatggccacgatgaccagcag	15	11	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	37823802	37823802	G	C	SNP	ADRB3	ENST00000345060	human	ensembl	69_37n	-1	known	missense	c.186	p.I62M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Adrgc_rcpt_B3,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	ADRB3	HGNC	ENSG00000188778	62	0	0	93	15	13.76	-	-	-	C	37823802	G	C	37823802	3	2	490	1	0	0	0	0	1	0	0	0	342	1048	37	3	1048	3	ADRB3	8	37823802	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	133212	37823802	108540220	342	45017										
LSM1	0	genome.wustl.edu	37	chr8	38029500	38029500	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taccaaattgatcaatgcttCttaaaaagcctataagtgtc	5	8	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	38029500	38029500	C	T	SNP	LSM1	ENST00000311351	human	ensembl	69_37n	-1	known	missense	c.98	p.R33K	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM1	HGNC	ENSG00000175324	15	0	0	8	4	33.33	-	-	-	T	38029500	C	T	38029500	3	4	490	1	0	0	0	0	1	0	0	0	9116	913	32	2	315	2	LSM1	8	38029500	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	205698	38029500	108334522	343	45018										
RP1	0	genome.wustl.edu	37	chr8	55539243	55539243	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aactttaaagcctataaaatCagctccagtatgtagaaatg	6	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	55539243	55539243	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.2801	p.S934L	0.214	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	29	0	0	36	6	14.29	-	-	-	T	55539243	C	T	55539243	3	4	490	1	0	0	0	0	1	0	0	0	13618	838	29	2	2811	2	RP1	8	55539243	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17509743	55539243	90824779	344	45019										
NSMAF	0	genome.wustl.edu	37	chr8	59500239	59500239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcttttggtgcctggcatctCtgcaggaacaccagaccaca	9	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	59500239	59500239	C	G	SNP	NSMAF	ENST00000427130	human	ensembl	69_37n	-1	known	missense	c.2326	p.E776Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	32	0	0	28	11	28.21	-	-	-	G	59500239	C	G	59500239	3	3	490	1	0	0	0	0	1	0	0	0	10747	922	32	2	540	2	NSMAF	8	59500239	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3960996	59500239	86863783	345	45020										
VCPIP1	0	genome.wustl.edu	37	chr8	67563703	67563703	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttaactatacccatggttttCttcataatactgtagaatac	4	8	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	67563703	67563703	C	T	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	silent	c.2787	p.K929	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	69	0	0	52	8	13.33	-	-	-	T	67563703	C	T	67563703	2	4	490	1	0	0	0	0	0	0	0	1	17238	912	32	2		2	VCPIP1	8	67563703	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8063464	67563703	78800319	346	45021										
ZFHX4	0	genome.wustl.edu	37	chr8	77619987	77619987	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgagcgctctctccctgaaGaggaatggagggcagtaatt	14	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	77619987	77619987	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2797	p.E933K	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	27	0	0	34	5	12.82	-	-	-	A	77619987	G	A	77619987	3	1	490	1	0	0	0	0	1	0	0	0	17731	943	33	2	2803	2	ZFHX4	8	77619987	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10056284	77619987	68744035	347	45022										
CNBD1	0	genome.wustl.edu	37	chr8	88365898	88365898	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acttgtttatatggggaaacTtaaggagaaggagtcctttg	12	4	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	88365898	88365898	T	G	SNP	CNBD1	ENST00000518476	human	ensembl	69_37n	1	known	missense	c.1187	p.L396R	0.229	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	60	0	0	58	7	10.77	-	-	-	G	88365898	T	G	88365898	3	3	490	1	0	0	0	0	1	0	0	0	3621	1609	56	5	1225	5	CNBD1	8	88365898	Missense_Mutation	SNP	T	TCGA-BH-A0B6-01A-11D-A19Y-09	10745911	88365898	57998124	348	45023										
KIAA1429	0	genome.wustl.edu	37	chr8	95504881	95504881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcagtggaataaattttaccTtgacgttataaaggtctcat	7	6	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	95504881	95504881	T	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.4807	p.S1603R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	29	0	0	38	5	11.63	-	-	-	G	95504881	T	G	95504881	3	3	490	1	0	0	0	0	1	0	0	0	8283	1623	56	5	647	5	KIAA1429	8	95504881	Missense_Mutation	SNP	T	TCGA-BH-A0B6-01A-11D-A19Y-09	7138983	95504881	50859141	349	45024										
INTS8	0	genome.wustl.edu	37	chr8	95892416	95892416	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttacagctggcagcgcagaGaaggaaaaaaaagtttctcc	11	8	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	95892416	95892416	G	A	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	missense	c.2942	p.R981K	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	26	0	0	28	9	24.32	-	-	-	A	95892416	G	A	95892416	3	1	490	1	0	0	0	0	1	0	0	0	7838	942	33	2	3048	2	INTS8	8	95892416	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	387535	95892416	50471606	350	45025										
SPAG1	0	genome.wustl.edu	37	chr8	101271477	101271477	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccatactgttgccttctctGaaatataagagtaacaaata	5	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	101271477	101271477	G	T	SNP	SPAG1	ENST00000519409	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SPAG1	HGNC	ENSG00000104450	75	0	0	81	15	15.62	-	-	-	T	101271477	G	T	101271477	1	4	490	0	1	0	0	0	0	0	0	0	15066	1305	45	2		2	SPAG1	8	101271477	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5379061	101271477	45092545	351	45026										
EXT1	0	genome.wustl.edu	37	chr8	118830770	118830770	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caattccatagaactatgatCtgaaagggatggggctcatt	10	7	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	118830770	118830770	C	G	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	splice_site	c.1537-1	e7-1	1.000	-	-	-	no_errors	EXT1	HGNC	ENSG00000182197	34	0	0	47	10	17.54	-	-	-	G	118830770	C	G	118830770	5	3	490	1	0	0	0	0	0	0	1	0	5360	927	32	2	724	2	EXT1	8	118830770	Splice_Site	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17559293	118830770	27533252	352	45027										
FAM91A1	0	genome.wustl.edu	37	chr8	124818463	124818463	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aactcagtgatgcttctgatGagagaggttagccaatagtt	11	6	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	124818463	124818463	G	T	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	nonsense	c.2026	p.E676*	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	75	0	0	71	28	28.28	-	-	-	T	124818463	G	T	124818463	4	4	490	1	0	0	0	0	0	1	0	0	5697	1291	45	2	2104	2	FAM91A1	8	124818463	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5987693	124818463	21545559	353	45028										
PHF20L1	0	genome.wustl.edu	37	chr8	133823350	133823350	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaaaaaggaagactacaatGaaacagctccaatgctggag	9	7	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	133823350	133823350	G	A	SNP	PHF20L1	ENST00000315808	human	ensembl	69_37n	1	known	missense	c.907	p.E303K	0.995	pfam_DUF3776	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	58	0	0	41	10	19.61	-	-	-	A	133823350	G	A	133823350	3	1	490	1	0	0	0	0	1	0	0	0	11906	1291	45	2	937	2	PHF20L1	8	133823350	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9004887	133823350	12540672	354	45029										
TRAPPC9	0	genome.wustl.edu	37	chr8	140743268	140743268	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaggccaggcagggtcacctCtggccctgcagaaagaggga	16	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	140743268	140743268	C	G	SNP	TRAPPC9	ENST00000521667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	21	0	0	33	9	21.43	-	-	-	G	140743268	C	G	140743268	1	3	490	0	1	0	0	0	0	0	0	0	16561	928	32	2		2	TRAPPC9	8	140743268	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6919918	140743268	5620754	355	45030										
BAI1	0	genome.wustl.edu	37	chr8	143569763	143569763	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcccagccagcggagccactGacatcagcttccccatgaag	9	16	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	143569763	143569763	G	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.2347	p.D783N	0.994	pfam_DUF3497,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	94	0	0	91	24	20.87	-	-	-	A	143569763	G	A	143569763	3	1	490	1	0	0	0	0	1	0	0	0	1302	1290	45	2	2397	2	BAI1	8	143569763	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2826495	143569763	2794259	356	45031										
CPSF1	0	genome.wustl.edu	37	chr8	145624842	145624842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agccctggaccggccctcacCtgaccagccggccgtcgcat	11	19	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	8	145624842	145624842	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.1294	p.A432T	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	45	0	0	77	20	20.62	-	-	-	T	145624842	C	T	145624842	3	4	490	1	0	0	0	0	1	0	0	0	3854	695	24	4	3141	4	CPSF1	8	145624842	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2055079	145624842	739180	357	45032										
SMARCA2	0	genome.wustl.edu	37	chr9	2039490	2039490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tatgtcaccacacccatctcCattaggagccccagagcacg	7	16	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	2039490	2039490	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.380	p.P127L	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	34	0	0	50	9	15.25	-	-	-	T	2039490	C	T	2039490	3	4	490	1	0	0	0	0	1	0	0	0	14858	594	21	4	390	4	SMARCA2	9	2039490	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		2039490	139173941	358	45033										
PPAPDC2	0	genome.wustl.edu	37	chr9	4662873	4662873	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgggccgggcgcgaggtgctGatgaacctgctcttcgccct	15	13	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	4662873	4662873	G	C	SNP	PPAPDC2	ENST00000381883	human	ensembl	69_37n	1	known	silent	c.498	p.L166	0.990	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC2	HGNC	ENSG00000205808	37	0	0	58	13	18.31	-	-	-	C	4662873	G	C	4662873	2	2	490	1	0	0	0	0	0	0	0	1	12368	1277	45	2		2	PPAPDC2	9	4662873	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2623383	4662873	136550558	359	45034										
TAF1L	0	genome.wustl.edu	37	chr9	32631258	32631258	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtaggtccattggccgagtGatgattttgtagtagtcctt	12	6	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	32631258	32631258	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.4320	p.I1440	1.000	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	77	0	0	68	9	11.69	-	-	-	A	32631258	G	A	32631258	2	1	490	1	0	0	0	0	0	0	0	1	15615	1280	45	2		2	TAF1L	9	32631258	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	27968385	32631258	108582173	360	45035										
DNAI1	0	genome.wustl.edu	37	chr9	34483462	34483462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttagagcatcagcataggcaGaggaaccaggaagagagtaa	13	6	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	34483462	34483462	G	C	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	missense	c.65	p.R22T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	80	0	0	89	15	14.42	-	-	-	C	34483462	G	C	34483462	3	2	490	1	0	0	0	0	1	0	0	0	4644	942	33	2	71	2	DNAI1	9	34483462	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1852204	34483462	106729969	361	45036										
CNTFR	0	genome.wustl.edu	37	chr9	34568931	34568931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgggcgtagacaactgcggCggcggcggcaagcacagcac	16	13	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	34568931	34568931	C	T	SNP	CNTFR	ENST00000351266	human	ensembl	69_37n	-1	known	missense	c.49	p.A17T	0.328	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTFR	HGNC	ENSG00000122756	116	0	0	98	28	22.22	-	-	-	T	34568931	C	T	34568931	3	4	490	1	0	0	0	0	1	0	0	0	3668	768	27	1	1101	1	CNTFR	9	34568931	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	85469	34568931	106644500	362	45037										
DCTN3	0	genome.wustl.edu	37	chr9	34614690	34614690	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctccatcttcgcttctagtCatctcccctcccatacctgc	3	20	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	34614690	34614690	C	T	SNP	DCTN3	ENST00000479399	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	DCTN3	HGNC	ENSG00000137100	33	0	0	26	11	29.73	-	-	-	T	34614690	C	T	34614690	1	4	490	0	1	0	0	0	0	0	0	0	4339	841	29	2		2	DCTN3	9	34614690	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	45759	34614690	106598741	363	45038										
NPR2	0	genome.wustl.edu	37	chr9	35800478	35800478	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acctggattctggggactttCaggtgatggaggaggaggca	17	6	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	35800478	35800478	C	G	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.1216	p.Q406E	1.000	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	33	0	0	26	8	23.53	-	-	-	G	35800478	C	G	35800478	3	3	490	1	0	0	0	0	1	0	0	0	10668	827	29	2	1234	2	NPR2	9	35800478	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1185788	35800478	105412953	364	45039										
RECK	0	genome.wustl.edu	37	chr9	36085236	36085236	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaagtcataacaatgagaaGagagcctgatatcttttaaa	7	5	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	36085236	36085236	G	A	SNP	RECK	ENST00000479053	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RECK	HGNC	ENSG00000122707	48	0	0	47	10	17.54	-	-	-	A	36085236	G	A	36085236	1	1	490	0	1	0	0	0	0	0	0	0	13283	957	33	2		2	RECK	9	36085236	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	284758	36085236	105128195	365	45040										
FAM75A3	0	genome.wustl.edu	37	chr9	40704366	40704366	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccacatctggggcaaattCtgggtgagaccccacaaaat	10	12	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	40704366	40704366	C	G	SNP	FAM75A3	ENST00000356699	human	ensembl	69_37n	1	known	missense	c.2023	p.L675V	0.002	NULL	NULL	-	no_errors	FAM75A3	HGNC	ENSG00000147926	14	0	0	20	9	31.03	-	-	-	G	40704366	C	G	40704366	3	3	490	1	0	0	0	0	1	0	0	0	5666	912	32	2	2037	2	FAM75A3	9	40704366	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4619130	40704366	100509065	366	45041										
PCSK5	0	genome.wustl.edu	37	chr9	78804114	78804114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attactttgaccactcttcaGagaatggatacaaatcctgc	6	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	78804114	78804114	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.2485	p.E829K	0.988	superfamily_Growth_fac_rcpt	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	49	0	0	50	11	18.03	-	-	-	A	78804114	G	A	78804114	3	1	490	1	0	0	0	0	1	0	0	0	11676	943	33	2	2559	2	PCSK5	9	78804114	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	38099748	78804114	62409317	367	45042										
PRUNE2	0	genome.wustl.edu	37	chr9	79322053	79322053	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgaatcccaagctctggattCatcctcagcaacgtggcagt	9	12	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	79322053	79322053	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.4060	p.E1354K	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	38	0	0	42	7	14.29	-	-	-	T	79322053	C	T	79322053	3	4	490	1	0	0	0	0	1	0	0	0	12721	835	29	2	4177	2	PRUNE2	9	79322053	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	517939	79322053	61891378	368	45043										
VPS13A	0	genome.wustl.edu	37	chr9	79930212	79930212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgacaaaaaagacatgatgGatataaagtacaggaaagtc	9	4	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	79930212	79930212	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.4456	p.D1486N	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	43	0	0	42	9	17.65	-	-	-	A	79930212	G	A	79930212	3	1	490	1	0	0	0	0	1	0	0	0	17286	1174	41	2	4606	2	VPS13A	9	79930212	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	608159	79930212	61283219	369	45044										
VPS13A	0	genome.wustl.edu	37	chr9	79936536	79936536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttttagtgtactcaacattCctatggcaaaatcatatgta	5	8	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	79936536	79936536	C	T	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.5704	p.P1902S	0.021	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	54	0	0	27	9	25	-	-	-	T	79936536	C	T	79936536	3	4	490	1	0	0	0	0	1	0	0	0	17286	855	30	2	5878	2	VPS13A	9	79936536	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6324	79936536	61276895	370	45045										
CEP78	0	genome.wustl.edu	37	chr9	80868264	80868264	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaagatcattctctgtgctCtttaaattgaatagagtcgt	9	6	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	80868264	80868264	C	T	SNP	CEP78	ENST00000487108	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CEP78	HGNC	ENSG00000148019	38	0	0	38	12	24	-	-	-	T	80868264	C	T	80868264	1	4	490	0	1	0	0	0	0	0	0	0	3291	928	32	2		2	CEP78	9	80868264	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	931728	80868264	60345167	371	45046										
TLE4	0	genome.wustl.edu	37	chr9	82322052	82322052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggatagaagagggatatgggGaaattgagtgaaacacgtct	15	3	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	82322052	82322052	G	A	SNP	TLE4	ENST00000417836	human	ensembl	69_37n	1	novel	missense	c.149	p.G50E	0.009	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TLE4	HGNC	ENSG00000106829	99	0	0	81	12	12.9	-	-	-	A	82322052	G	A	82322052	3	1	490	1	0	0	0	0	1	0	0	0	16036	1189	41	2		2	TLE4	9	82322052	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1453788	82322052	58891379	372	45047										
GAS1	0	genome.wustl.edu	37	chr9	89560990	89560990	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggcgggccatgttctccttGaccgactcgcagatgggccg	14	13	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	89560990	89560990	G	C	SNP	GAS1	ENST00000298743	human	ensembl	69_37n	-1	known	silent	c.705	p.V235	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GAS1	HGNC	ENSG00000180447	19	0	0	20	4	16.67	-	-	-	C	89560990	G	C	89560990	2	2	490	1	0	0	0	0	0	0	0	1	6294	1277	45	2		2	GAS1	9	89560990	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7238938	89560990	51652441	373	45048										
ROR2	0	genome.wustl.edu	37	chr9	94495670	94495670	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggatgggatggcgaactgtGagcactggtccgacaggtgc	17	8	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	94495670	94495670	G	A	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	missense	c.671	p.S224L	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	45	0	0	67	9	11.84	-	-	-	A	94495670	G	A	94495670	3	1	490	1	0	0	0	0	1	0	0	0	13613	1294	45	2	2176	2	ROR2	9	94495670	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4934680	94495670	46717761	374	45049										
SMC2	0	genome.wustl.edu	37	chr9	106889684	106889684	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aacacaaggagcaaaacaatGattctcagcttaaaattaag	6	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	106889684	106889684	G	A	SNP	SMC2	ENST00000286398	human	ensembl	69_37n	1	known	missense	c.2713	p.D905N	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	42	0	0	36	5	12.2	-	-	-	A	106889684	G	A	106889684	3	1	490	1	0	0	0	0	1	0	0	0	14872	1290	45	2	2787	2	SMC2	9	106889684	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	12394014	106889684	34323747	375	45050										
SVEP1	0	genome.wustl.edu	37	chr9	113168453	113168453	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcttacctgagtttcacttCactttcataggtgtgtgcct	7	10	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	113168453	113168453	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.9427	p.E3143K	0.996	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	62	0	0	58	14	19.44	-	-	-	T	113168453	C	T	113168453	3	4	490	1	0	0	0	0	1	0	0	0	15511	835	29	2	1332	2	SVEP1	9	113168453	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6278769	113168453	28044978	376	45051										
SVEP1	0	genome.wustl.edu	37	chr9	113169051	113169051	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccacagttgactggtttacaGagaggaatctctgcatccca	9	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	113169051	113169051	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.8829	p.L2943	0.983	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	45	0	0	31	9	22.5	-	-	-	A	113169051	G	A	113169051	2	1	490	1	0	0	0	0	0	0	0	1	15511	929	33	2		2	SVEP1	9	113169051	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	598	113169051	28044380	377	45052										
KIAA0368	0	genome.wustl.edu	37	chr9	114172339	114172339	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accttatttgtttctttactGgaaggtattctacttagtaa	6	6	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	114172339	114172339	G	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	silent	c.3066	p.S1022	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	51	0	0	43	13	23.21	-	-	-	A	114172339	G	A	114172339	2	1	490	1	0	0	0	0	0	0	0	1	8223	1335	47	4		4	KIAA0368	9	114172339	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1003288	114172339	27041092	378	45053										
OR5C1	0	genome.wustl.edu	37	chr9	125551947	125551947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcgagcagcctccaccggtGgttcccacctcacagccgtg	12	17	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	125551947	125551947	G	A	SNP	OR5C1	ENST00000373680	human	ensembl	69_37n	1	known	missense	c.736	p.G246S	0.971	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215	23	0	0	21	11	34.38	-	-	-	A	125551947	G	A	125551947	3	1	490	1	0	0	0	0	1	0	0	0	11226	1348	47	4	738	4	OR5C1	9	125551947	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11379608	125551947	15661484	379	45054										
ZBTB6	0	genome.wustl.edu	37	chr9	125673814	125673814	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaagcattgctttcctcttCtttaacatggaaatctatgt	5	9	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	125673814	125673814	C	A	SNP	ZBTB6	ENST00000373659	human	ensembl	69_37n	-1	known	nonsense	c.538	p.E180*	0.999	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130	29	0	0	28	8	22.22	-	-	-	A	125673814	C	A	125673814	4	1	490	1	0	0	0	0	0	1	0	0	17648	922	32	2	740	2	ZBTB6	9	125673814	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	121867	125673814	15539617	380	45055										
GOLGA1	0	genome.wustl.edu	37	chr9	127689006	127689006	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accttttcaagctgatccatCttttctgaccattcctaaaa	3	12	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	127689006	127689006	C	T	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	silent	c.414	p.K138	0.744	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	20	0	0	11	4	26.67	-	-	-	T	127689006	C	T	127689006	2	4	490	1	0	0	0	0	0	0	0	1	6603	912	32	2		2	GOLGA1	9	127689006	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2015192	127689006	13524425	381	45056										
GLE1	0	genome.wustl.edu	37	chr9	131296228	131296228	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggctttggaagactatcaGaggtaaagttgtttttctcc	10	6	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	131296228	131296228	G	A	SNP	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	silent	c.1644	p.Q548	1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	56	0	0	51	9	15	-	-	-	A	131296228	G	A	131296228	2	1	490	1	0	0	0	0	0	0	0	1	6487	933	33	2		2	GLE1	9	131296228	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3607222	131296228	9917203	382	45057										
PKN3	0	genome.wustl.edu	37	chr9	131482032	131482032	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcctggctcccgaggtgctGacccaggaggcatacacacg	12	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	131482032	131482032	G	A	SNP	PKN3	ENST00000291906	human	ensembl	69_37n	1	known	silent	c.2193	p.L731	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN3	HGNC	ENSG00000160447	54	0	0	47	13	21.67	-	-	-	A	131482032	G	A	131482032	2	1	490	1	0	0	0	0	0	0	0	1	12055	1277	45	2		2	PKN3	9	131482032	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	185804	131482032	9731399	383	45058										
PPP2R4	0	genome.wustl.edu	37	chr9	131898844	131898844	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggatgacttccagtttctgCccttcatctggggcagttcg	11	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	131898844	131898844	C	T	SNP	PPP2R4	ENST00000452489	human	ensembl	69_37n	1	known	missense	c.760	p.P254S	1.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383	68	0	0	58	9	13.43	-	-	-	T	131898844	C	T	131898844	3	4	490	1	0	0	0	0	1	0	0	0	12468	739	26	4	790	4	PPP2R4	9	131898844	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	416812	131898844	9314587	384	45059										
NTNG2	0	genome.wustl.edu	37	chr9	135106788	135106788	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcagaccccaaatctcagaGatgcttctggggtgcaccgt	11	12	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	135106788	135106788	G	A	SNP	NTNG2	ENST00000372179	human	ensembl	69_37n	1	known	silent	c.1161	p.E387	0.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	60	0	0	60	8	11.59	-	-	-	A	135106788	G	A	135106788	2	1	490	1	0	0	0	0	0	0	0	1	10778	957	33	2		2	NTNG2	9	135106788	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3207944	135106788	6106643	385	45060										
C9orf171	0	genome.wustl.edu	37	chr9	135285786	135285786	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaccgtggcggacatccgttCcggcatggagaacgagcggc	16	12	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	135285786	135285786	C	G	SNP	C9orf171	ENST00000343036	human	ensembl	69_37n	1	known	missense	c.128	p.S43C	0.216	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523	14	0	0	16	5	23.81	-	-	-	G	135285786	C	G	135285786	3	3	490	1	0	0	0	0	1	0	0	0	2495	855	30	2	130	2	C9orf171	9	135285786	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	178998	135285786	5927645	386	45061										
ABCA2	0	genome.wustl.edu	37	chr9	139912043	139912043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcacctggccgtacttcagGatggcggtgagtgctgtcac	14	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	9	139912043	139912043	G	A	SNP	ABCA2	ENST00000479446	human	ensembl	69_37n	-1	known	missense	c.362	p.S121F	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA2	HGNC	ENSG00000107331	25	0	0	37	6	13.95	-	-	-	A	139912043	G	A	139912043	3	1	490	1	0	0	0	0	1	0	0	0	32	1164	41	2	5129	2	ABCA2	9	139912043	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4626257	139912043	1301388	387	45062										
CUBN	0	genome.wustl.edu	37	chr10	16957944	16957944	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctggagatgccactcacaGaataagttgtctctgtatgg	10	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	16957944	16957944	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.7086	p.F2362	0.081	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	57	0	0	86	15	14.85	-	-	-	A	16957944	G	A	16957944	2	1	490	1	0	0	0	0	0	0	0	1	4082	933	33	2		2	CUBN	10	16957944	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		16957944	118576803	388	45063										
SLC39A12	0	genome.wustl.edu	37	chr10	18254617	18254617	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tacgaataccctccgcctatCaggtaaggatgttttcacga	8	11	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	18254617	18254617	C	G	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	nonsense	c.749	p.S250*	0.350	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	37	0	0	38	6	13.64	-	-	-	G	18254617	C	G	18254617	4	3	490	1	0	0	0	0	0	1	0	0	14704	838	29	2	759	2	SLC39A12	10	18254617	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1296673	18254617	117280130	389	45064										
MASTL	0	genome.wustl.edu	37	chr10	27459563	27459563	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttttctatgttctgatgatGatagagcttctaaaaatatt	7	4	3	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	27459563	27459563	G	T	SNP	MASTL	ENST00000375940	human	ensembl	69_37n	1	known	missense	c.1675	p.D559Y	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MASTL	HGNC	ENSG00000120539	34	0	0	29	5	14.71	-	-	-	T	27459563	G	T	27459563	3	4	490	1	0	0	0	0	1	0	0	0	9399	1290	45	2	1705	2	MASTL	10	27459563	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9204946	27459563	108075184	390	45065										
WAC	0	genome.wustl.edu	37	chr10	28905246	28905246	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcacacttcagtgaaaatctCataaaacacgttcaaggatg	7	9	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	28905246	28905246	C	T	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	silent	c.1701	p.L567	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	37	0	0	45	12	21.05	-	-	-	T	28905246	C	T	28905246	2	4	490	1	0	0	0	0	0	0	0	1	17344	813	29	2		2	WAC	10	28905246	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1445683	28905246	106629501	391	45066										
SVIL	0	genome.wustl.edu	37	chr10	29822248	29822248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgccttgctggggaccctatCaaaggctgagtgctcagact	12	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	29822248	29822248	C	G	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.1048	p.D350H	0.426	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	67	0	0	58	11	15.71	-	-	-	G	29822248	C	G	29822248	3	3	490	1	0	0	0	0	1	0	0	0	15512	826	29	2	5720	2	SVIL	10	29822248	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	917002	29822248	105712499	392	45067										
PPYR1	0	genome.wustl.edu	37	chr10	47087782	47087782	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accaacttcaagaaggagatCaaggccctggtgctgacttg	11	10	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	47087782	47087782	C	G	SNP	PPYR1	ENST00000374312	human	ensembl	69_37n	1	known	missense	c.999	p.I333M	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_NPY4_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_NPY4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PPYR1	HGNC	ENSG00000204174	112	0	0	136	16	10.53	-	-	-	G	47087782	C	G	47087782	3	3	490	1	0	0	0	0	1	0	0	0	12493	816	29	2	1001	2	PPYR1	10	47087782	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17265534	47087782	88446965	393	45068										
RBP3	0	genome.wustl.edu	37	chr10	48388468	48388468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atacaggtgctggcggggctCtgcctcaaagaagtaggagc	15	9	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	48388468	48388468	C	G	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.2410	p.E804Q	0.948	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	53	0	0	65	31	32.29	-	-	-	G	48388468	C	G	48388468	3	3	490	1	0	0	0	0	1	0	0	0	13240	922	32	2	1349	2	RBP3	10	48388468	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1300686	48388468	87146279	394	45069										
CHAT	0	genome.wustl.edu	37	chr10	50835753	50835753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaatggcttccaacgaggacGagcgtttgcctccaattggc	11	11	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	50835753	50835753	G	A	SNP	CHAT	ENST00000337653	human	ensembl	69_37n	1	known	missense	c.1033	p.E345K	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748	65	0	0	94	13	12.15	-	-	-	A	50835753	G	A	50835753	3	1	490	1	0	0	0	0	1	0	0	0	3342	1059	37	1	1103	1	CHAT	10	50835753	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2447285	50835753	84698994	395	45070										
CSTF2T	0	genome.wustl.edu	37	chr10	53458881	53458881	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagagcttcatctgcttcatCagctcaaacatctgctccgg	7	14	6	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	53458881	53458881	C	G	SNP	CSTF2T	ENST00000331173	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	0.992	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	57	0	0	46	18	28.12	-	-	-	G	53458881	C	G	53458881	2	3	490	1	0	0	0	0	0	0	0	1	4017	813	29	2		2	CSTF2T	10	53458881	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2623128	53458881	82075866	396	45071										
SGPL1	0	genome.wustl.edu	37	chr10	72604358	72604358	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agtgtcgtgtggaccctgctGatagtctggggatatgagtt	15	6	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	72604358	72604358	G	C	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	1	known	silent	c.156	p.L52	0.914	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	51	0	0	72	9	11.11	-	-	-	C	72604358	G	C	72604358	2	2	490	1	0	0	0	0	0	0	0	1	14306	1277	45	2		2	SGPL1	10	72604358	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	19145477	72604358	62930389	397	45072										
DDIT4	0	genome.wustl.edu	37	chr10	74034581	74034581	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccaggcgcggctgggctctCgacgccctgcgcgcctgctg	15	18	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	74034581	74034581	C	T	SNP	DDIT4	ENST00000307365	human	ensembl	69_37n	1	known	nonsense	c.334	p.R112*	0.994	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4	HGNC	ENSG00000168209	18	0	0	24	10	29.41	-	-	-	T	74034581	C	T	74034581	4	4	490	1	0	0	0	0	0	1	0	0	4362	876	31	1	340	1	DDIT4	10	74034581	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1430223	74034581	61500166	398	45073										
LDB3	0	genome.wustl.edu	37	chr10	88476470	88476470	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggggaccgtccagagggctGagcgattcccagccagcagc	16	13	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	88476470	88476470	G	T	SNP	LDB3	ENST00000429277	human	ensembl	69_37n	1	known	nonsense	c.1633	p.E545*	1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367	28	0	0	32	8	20	-	-	-	T	88476470	G	T	88476470	4	4	490	1	0	0	0	0	0	1	0	0	8751	1291	45	2	1988	2	LDB3	10	88476470	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	14441889	88476470	47058277	399	45074										
KIF20B	0	genome.wustl.edu	37	chr10	91492679	91492679	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggacaaggctgatacatcttCtttaataataaacaataaat	5	6	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	91492679	91492679	C	G	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	missense	c.2411	p.S804C	0.944	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	43	0	0	49	7	12.5	-	-	-	G	91492679	C	G	91492679	3	3	490	1	0	0	0	0	1	0	0	0	8339	913	32	2	2361	2	KIF20B	10	91492679	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3016209	91492679	44042068	400	45075										
CYP2C18	0	genome.wustl.edu	37	chr10	96495282	96495282	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cattggcctctcccttctctCtgtgagggatattttctctg	8	12	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	96495282	96495282	C	G	SNP	CYP2C18	ENST00000476630	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP2C18	HGNC	ENSG00000108242	43	0	0	38	6	13.64	-	-	-	G	96495282	C	G	96495282	1	3	490	0	1	0	0	0	0	0	0	0	4196	928	32	2		2	CYP2C18	10	96495282	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5002603	96495282	39039465	401	45076										
PKD2L1	0	genome.wustl.edu	37	chr10	102056047	102056047	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagcccacagccacaatggaGagctgtcacacaggggtcat	11	12	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	102056047	102056047	G	C	SNP	PKD2L1	ENST00000318222	human	ensembl	69_37n	-1	known	silent	c.1188	p.L396	0.997	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593	36	0	0	43	10	18.87	-	-	-	C	102056047	G	C	102056047	2	2	490	1	0	0	0	0	0	0	0	1	12041	929	33	2		2	PKD2L1	10	102056047	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5560765	102056047	33478700	402	45077										
GBF1	0	genome.wustl.edu	37	chr10	104129471	104129471	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgacttacttttccaggtaGaagatttcgtggatcccaat	8	8	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	104129471	104129471	G	A	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.3151	p.E1051K	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	30	0	0	25	8	24.24	-	-	-	A	104129471	G	A	104129471	3	1	490	1	0	0	0	0	1	0	0	0	6321	943	33	2	3245	2	GBF1	10	104129471	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2073424	104129471	31405276	403	45078										
VWA2	0	genome.wustl.edu	37	chr10	116014797	116014797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgtgacggtctggacatcaGccccgagagggtgagtgcaa	15	10	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	116014797	116014797	G	A	SNP	VWA2	ENST00000392982	human	ensembl	69_37n	1	known	missense	c.251	p.S84N	0.031	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816	70	0	0	100	15	13.04	-	-	-	A	116014797	G	A	116014797	3	1	490	1	0	0	0	0	1	0	0	0	17336	971	34	4	261	4	VWA2	10	116014797	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11885326	116014797	19519950	404	45079										
CHST15	0	genome.wustl.edu	37	chr10	125804103	125804103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acccagcactcaccaaagcgCttccgggtccaccagtgtgg	10	16	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	125804103	125804103	C	T	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	silent	c.879	p.K293	0.998	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	21	0	0	22	5	18.52	-	-	-	T	125804103	C	T	125804103	2	4	490	1	0	0	0	0	0	0	0	1	3432	796	28	4		4	CHST15	10	125804103	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9789306	125804103	9730644	405	45080										
JAKMIP3	0	genome.wustl.edu	37	chr10	133978209	133978209	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaagaaagaatagaagctcaGaagagacaaataaaggaact	10	4	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	10	133978209	133978209	G	C	SNP	JAKMIP3	ENST00000298622	human	ensembl	69_37n	1	known	missense	c.2454	p.Q818H	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	12	0	0	16	6	27.27	-	-	-	C	133978209	G	C	133978209	3	2	490	1	0	0	0	0	1	0	0	0	7996	933	33	2	2532	2	JAKMIP3	10	133978209	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8174106	133978209	1556538	406	45081										
PKP3	0	genome.wustl.edu	37	chr11	397562	397562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgatgacattgacctgccctCagcagtcaagtacctcatgg	9	12	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	397562	397562	C	T	SNP	PKP3	ENST00000331563	human	ensembl	69_37n	1	known	missense	c.968	p.S323L	0.766	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363	55	0	0	62	11	15.07	-	-	-	T	397562	C	T	397562	3	4	490	1	0	0	0	0	1	0	0	0	12060	838	29	2	982	2	PKP3	11	397562	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		397562	134608954	407	45082										
PHRF1	0	genome.wustl.edu	37	chr11	591405	591405	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgccaattcctgtccagttGatcgaactctatttaagtgc	7	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	591405	591405	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	missense	c.442	p.D148N	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	68	0	0	69	8	10.39	-	-	-	A	591405	G	A	591405	3	1	490	1	0	0	0	0	1	0	0	0	11935	1290	45	2	456	2	PHRF1	11	591405	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	193843	591405	134415111	408	45083										
CHID1	0	genome.wustl.edu	37	chr11	900964	900964	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggcccttggcatgcttcctGacagctcgcatccaccctgt	9	16	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	900964	900964	G	C	SNP	CHID1	ENST00000534254	human	ensembl	69_37n	-1	known	nonsense	c.461	p.S154*	0.230	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	CHID1	HGNC	ENSG00000177830	21	0	0	23	4	14.81	-	-	-	C	900964	G	C	900964	4	2	490	1	0	0	0	0	0	1	0	0	3374	1277	45	2	806	2	CHID1	11	900964	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	309559	900964	134105552	409	45084										
MUC6	0	genome.wustl.edu	37	chr11	1025239	1025239	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcctgttccagatgagcgtCaggttgtacctcccggggat	13	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	1025239	1025239	C	T	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	silent	c.2928	p.L976	0.997	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	25	0	0	42	6	12.5	-	-	-	T	1025239	C	T	1025239	2	4	490	1	0	0	0	0	0	0	0	1	10052	813	29	2		2	MUC6	11	1025239	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	124275	1025239	133981277	410	45085										
RRM1	0	genome.wustl.edu	37	chr11	4133204	4133204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagacattgatgcagcaattGaaacatataatcttctttct	5	7	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	4133204	4133204	G	C	SNP	RRM1	ENST00000300738	human	ensembl	69_37n	1	known	missense	c.562	p.E188Q	1.000	pfam_Ribncl_Rdtase_lsu_N,superfamily_Ribnucl_Rdtase_R1-su_N,tigrfam_NrdE_NrdA	pfam_Ribncl_red_lg_C,pfam_Ribncl_Rdtase_lsu_N,pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone,prints_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	41	0	0	31	7	18.42	-	-	-	C	4133204	G	C	4133204	3	2	490	1	0	0	0	0	1	0	0	0	13767	1291	45	2	588	2	RRM1	11	4133204	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3107965	4133204	130873312	411	45086										
OR56A4	0	genome.wustl.edu	37	chr11	6024172	6024172	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggaagttggggaagcagatGaggaggaattcagagactgg	18	3	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	6024172	6024172	G	A	SNP	OR56A4	ENST00000330728	human	ensembl	69_37n	-1	known	silent	c.207	p.L69	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389	21	0	0	22	14	38.89	-	-	-	A	6024172	G	A	6024172	2	1	490	1	0	0	0	0	0	0	0	1	11208	1277	45	2		2	OR56A4	11	6024172	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1890968	6024172	128982344	412	45087										
DCHS1	0	genome.wustl.edu	37	chr11	6651433	6651433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccgtgacgaagacgcgcgctGaaacgcgcgctgcacgacgg	15	14	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	6651433	6651433	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.4592	p.S1531L	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	26	0	0	24	6	20	-	-	-	A	6651433	G	A	6651433	3	1	490	1	0	0	0	0	1	0	0	0	4318	1294	45	2	5352	2	DCHS1	11	6651433	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	627261	6651433	128355083	413	45088										
USP47	0	genome.wustl.edu	37	chr11	11895388	11895388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaaatatctttgatgaaatGaagaagaaatttttacaggt	7	3	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	11895388	11895388	G	C	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	missense	c.81	p.M27I	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	47	0	0	34	13	27.66	-	-	-	C	11895388	G	C	11895388	3	2	490	1	0	0	0	0	1	0	0	0	17175	1305	45	2		2	USP47	11	11895388	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5243955	11895388	123111128	414	45089										
DKK3	0	genome.wustl.edu	37	chr11	11985983	11985983	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataaattagctatttctattGcacatctacccacagcctgg	5	11	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	11985983	11985983	G	A	SNP	DKK3	ENST00000527132	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DKK3	HGNC	ENSG00000050165	39	0	0	42	12	22.22	-	-	-	A	11985983	G	A	11985983	1	1	490	0	1	0	0	0	0	0	0	0	4582	1334	46	4		4	DKK3	11	11985983	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	90595	11985983	123020533	415	45090										
FAR1	0	genome.wustl.edu	37	chr11	13716450	13716450	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtatatgttttggtgaggcaGaaagctggacagacaccaca	12	7	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	13716450	13716450	G	A	SNP	FAR1	ENST00000354817	human	ensembl	69_37n	1	known	silent	c.138	p.Q46	0.999	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase	pfam_Male_sterile_NAD-bd,pfam_Malesterile,pfam_Epimerase_deHydtase	-	no_errors	FAR1	HGNC	ENSG00000197601	39	0	0	34	7	17.07	-	-	-	A	13716450	G	A	13716450	2	1	490	1	0	0	0	0	0	0	0	1	5720	933	33	2		2	FAR1	11	13716450	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1730467	13716450	121290066	416	45091										
SOX6	0	genome.wustl.edu	37	chr11	16068182	16068182	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgcatcttccgcgcctcctGaatggctttcatcactgtat	7	14	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	16068182	16068182	G	C	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.1501	p.Q501E	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	71	0	0	35	17	32.69	-	-	-	C	16068182	G	C	16068182	3	2	490	1	0	0	0	0	1	0	0	0	15044	1299	45	2	1005	2	SOX6	11	16068182	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2351732	16068182	118938334	417	45092										
HPS5	0	genome.wustl.edu	37	chr11	18332956	18332956	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtagctacagcaacataatCatcatcatgtaaacaacagg	7	9	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	18332956	18332956	C	A	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	missense	c.262	p.D88Y	1.000	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	22	0	0	18	4	18.18	-	-	-	A	18332956	C	A	18332956	3	1	490	1	0	0	0	0	1	0	0	0	7393	826	29	2	3207	2	HPS5	11	18332956	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2264774	18332956	116673560	418	45093										
KCNA4	0	genome.wustl.edu	37	chr11	30033478	30033478	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cacctcctcagtgaagatatCaaaggggacattgactggcc	10	11	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	30033478	30033478	C	G	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.748	p.D250H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	27	0	0	16	10	38.46	-	-	-	G	30033478	C	G	30033478	3	3	490	1	0	0	0	0	1	0	0	0	8059	826	29	2	1217	2	KCNA4	11	30033478	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11700522	30033478	104973038	419	45094										
DEPDC7	0	genome.wustl.edu	37	chr11	33047337	33047337	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taatgactgctttgttggttCagaagctgtggatgtcattt	11	5	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	33047337	33047337	C	T	SNP	DEPDC7	ENST00000241051	human	ensembl	69_37n	1	known	missense	c.206	p.S69L	0.999	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690	53	0	0	44	11	20	-	-	-	T	33047337	C	T	33047337	3	4	490	1	0	0	0	0	1	0	0	0	4480	838	29	2	262	2	DEPDC7	11	33047337	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3013859	33047337	101959179	420	45095										
CD44	0	genome.wustl.edu	37	chr11	35198253	35198253	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcccacaatggcccagatgGagaaagctctgagcatcgga	12	11	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	35198253	35198253	G	T	SNP	CD44	ENST00000428726	human	ensembl	69_37n	1	known	nonsense	c.199	p.E67*	0.465	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_CD44_antigen,prints_Link	-	no_errors	CD44	HGNC	ENSG00000026508	23	0	0	15	7	31.82	-	-	-	T	35198253	G	T	35198253	4	4	490	1	0	0	0	0	0	1	0	0	3046	1175	41	2	205	2	CD44	11	35198253	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2150916	35198253	99808263	421	45096										
RAG1	0	genome.wustl.edu	37	chr11	36595236	36595236	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgagcacaacaggagatatCcagtccatggtcctgtggat	11	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	36595236	36595236	C	G	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.382	p.P128A	0.996	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	47	0	0	28	17	37.78	-	-	-	G	36595236	C	G	36595236	3	3	490	1	0	0	0	0	1	0	0	0	13086	855	30	2	384	2	RAG1	11	36595236	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1396983	36595236	98411280	422	45097										
ACCSL	0	genome.wustl.edu	37	chr11	44072129	44072129	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagtgacatgaactgcattGaggacaccttgcttcagtac	9	9	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	44072129	44072129	G	A	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	0.617	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	72	0	0	59	26	30.59	-	-	-	A	44072129	G	A	44072129	3	1	490	1	0	0	0	0	1	0	0	0	134	1291	45	2	602	2	ACCSL	11	44072129	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7476893	44072129	90934387	423	45098										
ACCS	0	genome.wustl.edu	37	chr11	44089193	44089193	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcagatgttcacccttcctCaaaaggacttcagggctccc	8	14	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	44089193	44089193	C	G	SNP	ACCS	ENST00000263776	human	ensembl	69_37n	1	known	missense	c.16	p.Q6E	0.002	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCS	HGNC	ENSG00000110455	111	0	0	89	22	19.82	-	-	-	G	44089193	C	G	44089193	3	3	490	1	0	0	0	0	1	0	0	0	133	827	29	2	18	2	ACCS	11	44089193	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17064	44089193	90917323	424	45099										
ARFGAP2	0	genome.wustl.edu	37	chr11	47193262	47193262	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcggctgcctgctgctcacgGagcttctctgccacctgagc	11	16	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	47193262	47193262	G	C	SNP	ARFGAP2	ENST00000524782	human	ensembl	69_37n	-1	known	silent	c.762	p.L254	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	73	0	0	48	19	28.36	-	-	-	C	47193262	G	C	47193262	2	2	490	1	0	0	0	0	0	0	0	1	852	1161	41	2		2	ARFGAP2	11	47193262	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3104069	47193262	87813254	425	45100										
ACP2	0	genome.wustl.edu	37	chr11	47269662	47269662	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgggatatgtcttcactggtGaacggtctccatggcggtac	13	9	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	47269662	47269662	G	C	SNP	ACP2	ENST00000256997	human	ensembl	69_37n	-1	known	nonsense	c.137	p.S46*	0.907	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP2	HGNC	ENSG00000134575	63	0	0	51	6	10.53	-	-	-	C	47269662	G	C	47269662	4	2	490	1	0	0	0	0	0	1	0	0	163	1294	45	2	1207	2	ACP2	11	47269662	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	76400	47269662	87736854	426	45101										
MYBPC3	0	genome.wustl.edu	37	chr11	47365084	47365084	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggccattcttgagccatttGacctcagcgtcatggtcagc	10	12	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	47365084	47365084	G	C	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	silent	c.1182	p.V394	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	45	0	0	49	9	15.52	-	-	-	C	47365084	G	C	47365084	2	2	490	1	0	0	0	0	0	0	0	1	10085	1277	45	2		2	MYBPC3	11	47365084	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	95422	47365084	87641432	427	45102										
OR5D16	0	genome.wustl.edu	37	chr11	55606808	55606808	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcactctcttaccctgactCttatctcagccagttgcttc	4	15	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	55606808	55606808	C	G	SNP	OR5D16	ENST00000378396	human	ensembl	69_37n	1	known	missense	c.581	p.S194C	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5D16	HGNC	ENSG00000205029	88	0	0	63	9	12.5	-	-	-	G	55606808	C	G	55606808	3	3	490	1	0	0	0	0	1	0	0	0	11229	913	32	2	583	2	OR5D16	11	55606808	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8241724	55606808	79399708	428	45103										
OR8K5	0	genome.wustl.edu	37	chr11	55927282	55927282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaaatgactgatgacattaGagccacagaaggtcaatgta	9	6	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	55927282	55927282	G	C	SNP	OR8K5	ENST00000313447	human	ensembl	69_37n	-1	known	missense	c.512	p.S171C	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752	29	0	0	27	4	12.9	-	-	-	C	55927282	G	C	55927282	3	2	490	1	0	0	0	0	1	0	0	0	11318	942	33	2	414	2	OR8K5	11	55927282	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	320474	55927282	79079234	429	45104										
OR10W1	0	genome.wustl.edu	37	chr11	58034944	58034944	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accaagtggacacaaagagtCaatgtcatgaggagagggta	13	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	58034944	58034944	C	A	SNP	OR10W1	ENST00000395079	human	ensembl	69_37n	-1	known	missense	c.387	p.L129F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10W1	HGNC	ENSG00000172772	32	0	0	26	5	16.13	-	-	-	A	58034944	C	A	58034944	3	1	490	1	0	0	0	0	1	0	0	0	10994	825	29	2	534	2	OR10W1	11	58034944	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2107662	58034944	76971572	430	45105										
PRPF19	0	genome.wustl.edu	37	chr11	60668823	60668823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttctggcttcaccagctcctCaggcacagtcttccctctct	6	17	5	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	60668823	60668823	C	G	SNP	PRPF19	ENST00000227524	human	ensembl	69_37n	-1	known	missense	c.586	p.E196Q	1.000	NULL	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107	83	0	0	50	6	10.71	-	-	-	G	60668823	C	G	60668823	3	3	490	1	0	0	0	0	1	0	0	0	12645	835	29	2	964	2	PRPF19	11	60668823	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2633879	60668823	74337693	431	45106										
FADS1	0	genome.wustl.edu	37	chr11	61583518	61583518	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcccgtttcagccccatcctCgagaatgggctcctttcctg	8	16	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	61583518	61583518	C	G	SNP	FADS1	ENST00000541683	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FADS1	HGNC	ENSG00000149485	10	0	0	11	8	42.11	-	-	-	G	61583518	C	G	61583518	1	3	490	0	1	0	0	0	0	0	0	0	5405	899	31	3		3	FADS1	11	61583518	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	914695	61583518	73422998	432	45107										
GANAB	0	genome.wustl.edu	37	chr11	62397082	62397082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagcgctgggagccagcgaaGaaggccctggccaggacaaa	15	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	62397082	62397082	G	C	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.1878	p.F626L	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	34	0	0	34	13	27.66	-	-	-	C	62397082	G	C	62397082	3	2	490	1	0	0	0	0	1	0	0	0	6283	933	33	2	1062	2	GANAB	11	62397082	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	813564	62397082	72609434	433	45108										
SLC22A10	0	genome.wustl.edu	37	chr11	63064904	63064904	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaggtttttcttccatgatCattatatcaaataattcttt	4	7	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	63064904	63064904	C	T	SNP	SLC22A10	ENST00000332793	human	ensembl	69_37n	1	known	silent	c.636	p.I212	0.002	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	42	0	0	39	13	25	-	-	-	T	63064904	C	T	63064904	2	4	490	1	0	0	0	0	0	0	0	1	14530	816	29	2		2	SLC22A10	11	63064904	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	667822	63064904	71941612	434	45109										
RARRES3	0	genome.wustl.edu	37	chr11	63312301	63312301	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagatgaagtacagtattgtGagcaggaactgtgagcactt	12	5	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	63312301	63312301	G	A	SNP	RARRES3	ENST00000255688	human	ensembl	69_37n	1	known	silent	c.327	p.V109	0.000	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321	43	0	0	72	17	19.1	-	-	-	A	63312301	G	A	63312301	2	1	490	1	0	0	0	0	0	0	0	1	13140	1277	45	2		2	RARRES3	11	63312301	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	247397	63312301	71694215	435	45110										
TRMT112	0	genome.wustl.edu	37	chr11	64084384	64084384	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgttggggatcccgcggctGatggggaacatacgtccaga	15	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	64084384	64084384	G	A	SNP	TRMT112	ENST00000544844	human	ensembl	69_37n	-1	known	silent	c.327	p.I109	1.000	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	TRMT112	HGNC	ENSG00000173113	36	0	0	44	5	10.2	-	-	-	A	64084384	G	A	64084384	2	1	490	1	0	0	0	0	0	0	0	1	16659	1280	45	2		2	TRMT112	11	64084384	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	772083	64084384	70922132	436	45111										
EHBP1L1	0	genome.wustl.edu	37	chr11	65351030	65351030	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagcagagatgaaggttttaGagtctccagagaacaaatct	10	6	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	65351030	65351030	G	C	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.2887	p.E963Q	0.026	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	21	0	0	21	5	19.23	-	-	-	C	65351030	G	C	65351030	3	2	490	1	0	0	0	0	1	0	0	0	5011	943	33	2	2921	2	EHBP1L1	11	65351030	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1266646	65351030	69655486	437	45112										
SPTBN2	0	genome.wustl.edu	37	chr11	66461725	66461725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acttctcctccacggccctcGaggttctctccacctcccct	5	21	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	66461725	66461725	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.4388	p.S1463L	0.856	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	63	0	0	53	13	19.7	-	-	-	A	66461725	G	A	66461725	3	1	490	1	0	0	0	0	1	0	0	0	15211	1059	37	1	2852	1	SPTBN2	11	66461725	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1110695	66461725	68544791	438	45113										
PPP1CA	0	genome.wustl.edu	37	chr11	67168587	67168587	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagaagaatgggctggctcaGaaaaatctcccgggatttca	11	9	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	67168587	67168587	G	A	SNP	PPP1CA	ENST00000312989	human	ensembl	69_37n	-1	known	silent	c.172	p.L58	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CA	HGNC	ENSG00000172531	26	0	0	29	13	30.95	-	-	-	A	67168587	G	A	67168587	2	1	490	1	0	0	0	0	0	0	0	1	12426	933	33	2		2	PPP1CA	11	67168587	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	706862	67168587	67837929	439	45114										
ATG16L2	0	genome.wustl.edu	37	chr11	72525563	72525563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgtgcggcagctgcggcttCgggaccgtacgcaaaaggcg	16	12	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	72525563	72525563	C	T	SNP	ATG16L2	ENST00000321297	human	ensembl	69_37n	1	known	missense	c.73	p.R25W	1.000	pfam_Autophagy-rel_prot_16	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	10	0	0	26	8	23.53	-	-	-	T	72525563	C	T	72525563	3	4	490	1	0	0	0	0	1	0	0	0	1096	875	31	1	75	1	ATG16L2	11	72525563	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5356976	72525563	62480953	440	45115										
NEU3	0	genome.wustl.edu	37	chr11	74717362	74717362	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgtgggccctgtggctactCtgatctggctgctctggagg	15	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	74717362	74717362	C	T	SNP	NEU3	ENST00000294064	human	ensembl	69_37n	1	known	missense	c.1211	p.S404F	1.000	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU3	HGNC	ENSG00000162139	69	0	0	93	16	14.68	-	-	-	T	74717362	C	T	74717362	3	4	490	1	0	0	0	0	1	0	0	0	10415	913	32	2	1221	2	NEU3	11	74717362	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2191799	74717362	60289154	441	45116										
INTS4	0	genome.wustl.edu	37	chr11	77671428	77671428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taatttcagtcctctttcatGgagctgcaactagataataa	6	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	77671428	77671428	G	T	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	missense	c.667	p.H223N	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	64	0	0	61	9	12.86	-	-	-	T	77671428	G	T	77671428	3	4	490	1	0	0	0	0	1	0	0	0	7834	1348	47	4	2296	4	INTS4	11	77671428	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2954066	77671428	57335088	442	45117										
INTS4	0	genome.wustl.edu	37	chr11	77672127	77672127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acttttctccaaagagccaaGattgccaagtaactgcaggc	8	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	77672127	77672127	G	C	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	missense	c.529	p.L177V	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	46	0	0	36	6	14.29	-	-	-	C	77672127	G	C	77672127	3	2	490	1	0	0	0	0	1	0	0	0	7834	942	33	2	2438	2	INTS4	11	77672127	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	699	77672127	57334389	443	45118										
CREBZF	0	genome.wustl.edu	37	chr11	85371453	85371453	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttcaaggattccagagaatCttttcatatctccatttctg	5	9	5	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	85371453	85371453	C	G	SNP	CREBZF	ENST00000531515	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CREBZF	HGNC	ENSG00000137504	28	0	0	37	10	21.28	-	-	-	G	85371453	C	G	85371453	1	3	490	0	1	0	0	0	0	0	0	0	3893	928	32	2		2	CREBZF	11	85371453	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7699326	85371453	49635063	444	45119										
PICALM	0	genome.wustl.edu	37	chr11	85692951	85692951	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taaagatgaatccaagtcatCagatactaacttgctaggtg	8	7	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	85692951	85692951	C	T	SNP	PICALM	ENST00000393346	human	ensembl	69_37n	-1	known	missense	c.1612	p.D538N	1.000	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	PICALM	HGNC	ENSG00000073921	76	0	0	46	20	30.3	-	-	-	T	85692951	C	T	85692951	3	4	490	1	0	0	0	0	1	0	0	0	11954	826	29	2	398	2	PICALM	11	85692951	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	321498	85692951	49313565	445	45120										
ANKRD49	0	genome.wustl.edu	37	chr11	94230086	94230086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aatggaaaaagacccaagcaGattgcttctttgggctgctg	11	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	94230086	94230086	G	A	SNP	ANKRD49	ENST00000302755	human	ensembl	69_37n	1	known	missense	c.227	p.R76K	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD49	HGNC	ENSG00000168876	19	0	0	16	6	27.27	-	-	-	A	94230086	G	A	94230086	3	1	490	1	0	0	0	0	1	0	0	0	674	942	33	2	229	2	ANKRD49	11	94230086	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8537135	94230086	40776430	446	45121										
ACAT1	0	genome.wustl.edu	37	chr11	108009651	108009651	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggtggcaggtgggatggaGagcatgtccaatgttccata	15	6	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	108009651	108009651	G	A	SNP	ACAT1	ENST00000531813	human	ensembl	69_37n	1	known	missense	c.361	p.E121K	1.000	superfamily_Thiolase-like	pfam_Thiolase_N,superfamily_Thiolase-like	-	no_errors	ACAT1	HGNC	ENSG00000075239	97	0	0	86	10	10.42	-	-	-	A	108009651	G	A	108009651	3	1	490	1	0	0	0	0	1	0	0	0	121	933	33	2	484	2	ACAT1	11	108009651	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13779565	108009651	26996865	447	45122										
ATM	0	genome.wustl.edu	37	chr11	108183212	108183212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaaaagtaaagaagaaactgGaataagtttacaggtaaata	8	2	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	108183212	108183212	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.5993	p.G1998E	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	22	0	0	10	9	47.37	-	-	-	A	108183212	G	A	108183212	3	1	490	1	0	0	0	0	1	0	0	0	1113	1174	41	2	6147	2	ATM	11	108183212	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	173561	108183212	26823304	448	45123										
CEP164	0	genome.wustl.edu	37	chr11	117280452	117280452	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacagcctcaaccctcagtcGccgccgccgctcctcgcctc	8	22	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	117280452	117280452	G	A	SNP	CEP164	ENST00000278935	human	ensembl	69_37n	1	known	silent	c.3867	p.S1289	0.000	NULL	superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	CEP164	HGNC	ENSG00000110274	65	0	0	53	12	18.46	-	-	-	A	117280452	G	A	117280452	2	1	490	1	0	0	0	0	0	0	0	1	3278	1074	38	1		1	CEP164	11	117280452	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9097240	117280452	17726064	449	45124										
ARHGEF12	0	genome.wustl.edu	37	chr11	120346078	120346078	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgttgctgctggaagacattCttgtattgttacaaaagcag	10	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	120346078	120346078	C	G	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.3082	p.L1028V	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	65	0	0	38	19	32.76	-	-	-	G	120346078	C	G	120346078	3	3	490	1	0	0	0	0	1	0	0	0	899	913	32	2	3269	2	ARHGEF12	11	120346078	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3065626	120346078	14660438	450	45125										
VWA5A	0	genome.wustl.edu	37	chr11	124007909	124007909	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggttcaggggcctctggctCatagggacgtcccaaggcca	14	13	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	124007909	124007909	C	T	SNP	VWA5A	ENST00000392748	human	ensembl	69_37n	1	known	missense	c.1813	p.H605Y	0.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002	37	0	0	31	9	22.5	-	-	-	T	124007909	C	T	124007909	3	4	490	1	0	0	0	0	1	0	0	0	17339	826	29	2	1867	2	VWA5A	11	124007909	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3661831	124007909	10998607	451	45126										
OR8D1	0	genome.wustl.edu	37	chr11	124180216	124180216	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagagagaaagcccaagaaGaaggcagccagcactagcag	13	10	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	124180216	124180216	G	A	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	silent	c.447	p.F149	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	33	0	0	38	7	15.56	-	-	-	A	124180216	G	A	124180216	2	1	490	1	0	0	0	0	0	0	0	1	11304	933	33	2		2	OR8D1	11	124180216	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	172307	124180216	10826300	452	45127										
NCAPD3	0	genome.wustl.edu	37	chr11	134048630	134048630	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctcactgctgccttgagatGatggtgctgcaaagaaggga	13	9	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	11	134048630	134048630	G	A	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	missense	c.2681	p.S894L	0.001	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	41	0	0	28	8	22.22	-	-	-	A	134048630	G	A	134048630	3	1	490	1	0	0	0	0	1	0	0	0	10278	1294	45	2	1871	2	NCAPD3	11	134048630	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9868414	134048630	957886	453	45128										
AKAP3	0	genome.wustl.edu	37	chr12	4737352	4737352	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acacttccttatagaagaaaGacttcttagaaggaggcttg	9	7	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	4737352	4737352	G	C	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	missense	c.716	p.S239C	1.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	49	0	0	62	22	26.19	-	-	-	C	4737352	G	C	4737352	3	2	490	1	0	0	0	0	1	0	0	0	452	942	33	2	1853	2	AKAP3	12	4737352	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		4737352	129114543	454	45129										
TNFRSF1A	0	genome.wustl.edu	37	chr12	6439172	6439172	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagggtgggggtgaagcctgGagtgggactgaagcttgggt	21	5	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	6439172	6439172	G	C	SNP	TNFRSF1A	ENST00000162749	human	ensembl	69_37n	-1	known	missense	c.829	p.P277A	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182	31	0	0	33	4	10.81	-	-	-	C	6439172	G	C	6439172	3	2	490	1	0	0	0	0	1	0	0	0	16388	1174	41	2	546	2	TNFRSF1A	12	6439172	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1701820	6439172	127412723	455	45130										
TNFRSF1A	0	genome.wustl.edu	37	chr12	6443376	6443376	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaccagtccaataacccctGaggggtatattcccaccaac	8	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	6443376	6443376	G	C	SNP	TNFRSF1A	ENST00000162749	human	ensembl	69_37n	-1	known	nonsense	c.74	p.S25*	0.000	prints_TNFR_1A	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182	53	0	0	44	15	25.42	-	-	-	C	6443376	G	C	6443376	4	2	490	1	0	0	0	0	0	1	0	0	16388	1294	45	2	1329	2	TNFRSF1A	12	6443376	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4204	6443376	127408519	456	45131										
ACRBP	0	genome.wustl.edu	37	chr12	6756134	6756134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctgcctggagtggaggcctGagtcgaatcctgggctgcgg	18	10	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	6756134	6756134	G	C	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	missense	c.88	p.Q30E	0.000	pfam_Proacrosin-bd	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	58	0	0	41	12	22.64	-	-	-	C	6756134	G	C	6756134	3	2	490	1	0	0	0	0	1	0	0	0	170	1299	45	2	1579	2	ACRBP	12	6756134	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	312758	6756134	127095761	457	45132										
C12orf57	0	genome.wustl.edu	37	chr12	7052663	7052663	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacaaggcctttaggaaactGcgacaacggcttttgctctg	11	10	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	7052663	7052663	G	A	SNP	C12orf57	ENST00000542222	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C12orf57	HGNC	ENSG00000111678	25	0	0	26	5	16.13	-	-	-	A	7052663	G	A	7052663	1	1	490	0	1	0	0	0	0	0	0	0	1713	1334	46	4		4	C12orf57	12	7052663	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	296529	7052663	126799232	458	45133										
CLEC4D	0	genome.wustl.edu	37	chr12	8673751	8673751	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaatgaacccgacaactctCagggagaaaactgtgttgtt	10	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	8673751	8673751	C	G	SNP	CLEC4D	ENST00000299665	human	ensembl	69_37n	1	known	missense	c.532	p.Q178E	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527	15	0	0	21	7	25	-	-	-	G	8673751	C	G	8673751	3	3	490	1	0	0	0	0	1	0	0	0	3544	827	29	2	554	2	CLEC4D	12	8673751	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1621088	8673751	125178144	459	45134										
KLRD1	0	genome.wustl.edu	37	chr12	10462017	10462017	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cactctgtggaggttaatttCtgggaccttagggataatat	11	6	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	10462017	10462017	C	G	SNP	KLRD1	ENST00000381908	human	ensembl	69_37n	1	known	missense	c.38	p.S13C	0.578	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRD1	HGNC	ENSG00000134539	53	0	0	45	7	13.46	-	-	-	G	10462017	C	G	10462017	3	3	490	1	0	0	0	0	1	0	0	0	8472	913	32	2	44	2	KLRD1	12	10462017	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1788266	10462017	123389878	460	45135										
MAGOHB	0	genome.wustl.edu	37	chr12	10758913	10758913	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagtgtaatccaataagactGaaaactaaacatttcaagtc	5	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	10758913	10758913	G	A	SNP	MAGOHB	ENST00000320756	human	ensembl	69_37n	-1	known	silent	c.408	p.F136	1.000	pfam_Mago_nashi,superfamily_Mago_nashi	pfam_Mago_nashi,superfamily_Mago_nashi	-	no_errors	MAGOHB	HGNC	ENSG00000111196	51	0	0	36	8	18.18	-	-	-	A	10758913	G	A	10758913	2	1	490	1	0	0	0	0	0	0	0	1	9266	1281	45	2		2	MAGOHB	12	10758913	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	296896	10758913	123092982	461	45136										
TAS2R8	0	genome.wustl.edu	37	chr12	10959018	10959018	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaatgggacaattgcaaacaGgttaaagagagtcaagggtt	12	4	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	10959018	10959018	G	C	SNP	TAS2R8	ENST00000240615	human	ensembl	69_37n	-1	known	missense	c.562	p.L188V	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R8	HGNC	ENSG00000121314	19	0	0	18	6	25	-	-	-	C	10959018	G	C	10959018	3	2	490	1	0	0	0	0	1	0	0	0	15679	991	35	4	370	4	TAS2R8	12	10959018	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	200105	10959018	122892877	462	45137										
CDKN1B	0	genome.wustl.edu	37	chr12	12871086	12871086	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctgcaaggtgccggcgcagGagagccaggatgtcagcggg	18	11	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	12871086	12871086	G	T	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	nonsense	c.313	p.E105*	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	24	0	0	22	9	29.03	-	-	-	T	12871086	G	T	12871086	4	4	490	1	0	0	0	0	0	1	0	0	3188	1175	41	2	315	2	CDKN1B	12	12871086	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1912068	12871086	120980809	463	45138										
DERA	0	genome.wustl.edu	37	chr12	16189254	16189254	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaggagcttggagatgagtGgctgaagccagaactctttc	15	7	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	16189254	16189254	G	A	SNP	DERA	ENST00000428559	human	ensembl	69_37n	1	known	nonsense	c.839	p.W280*	1.000	pfam_DeoC/AroFGH_arch,pirsf_DeoC,tigrfam_DeoC	pfam_DeoC/AroFGH_arch,pirsf_DeoC,tigrfam_DeoC	-	no_errors	DERA	HGNC	ENSG00000023697	41	0	0	40	7	14.89	-	-	-	A	16189254	G	A	16189254	4	1	490	1	0	0	0	0	0	1	0	0	4481	1357	47	4	869	4	DERA	12	16189254	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3318168	16189254	117662641	464	45139										
PIK3C2G	0	genome.wustl.edu	37	chr12	18793483	18793483	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtacggaccccacttacaatGaaattgtaagtataagtcac	7	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	18793483	18793483	G	A	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	missense	c.4303	p.E1435K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	32	0	0	42	12	22.22	-	-	-	A	18793483	G	A	18793483	3	1	490	1	0	0	0	0	1	0	0	0	11985	1291	45	2	4298	2	PIK3C2G	12	18793483	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2604229	18793483	115058412	465	45140										
PDE3A	0	genome.wustl.edu	37	chr12	20709646	20709646	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agggccaagaggatcacaggTaagtttcttttccttttctt	9	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	20709646	20709646	T	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	splice_site	c.1011+2	e2+2	0.998	-	-	-	no_errors	PDE3A	HGNC	ENSG00000172572	26	0	0	20	4	16.67	-	-	-	A	20709646	T	A	20709646	5	1	490	1	0	0	0	0	0	0	1	0	11710	1652	57	5	1019	5	PDE3A	12	20709646	Splice_Site	SNP	T	TCGA-BH-A0B6-01A-11D-A19Y-09	1916163	20709646	113142249	466	45141										
DENND5B	0	genome.wustl.edu	37	chr12	31632842	31632842	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcatgaatggtaacggtgtGatcaagcatatactttttga	10	5	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	31632842	31632842	G	A	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	silent	c.690	p.I230	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	35	0	0	33	7	17.5	-	-	-	A	31632842	G	A	31632842	2	1	490	1	0	0	0	0	0	0	0	1	4473	1280	45	2		2	DENND5B	12	31632842	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10923196	31632842	102219053	467	45142										
NELL2	0	genome.wustl.edu	37	chr12	45000974	45000974	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtttcacagctgggtccagtGaagccttgtgggcaggcaca	14	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	45000974	45000974	G	A	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	silent	c.1791	p.F597	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	43	0	0	32	9	21.95	-	-	-	A	45000974	G	A	45000974	2	1	490	1	0	0	0	0	0	0	0	1	10406	1281	45	2		2	NELL2	12	45000974	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13368132	45000974	88850921	468	45143										
HDAC7	0	genome.wustl.edu	37	chr12	48184201	48184201	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatggggagatggggagggcGaggcagaccaagagaggcga	22	5	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	48184201	48184201	G	A	SNP	HDAC7	ENST00000477937	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HDAC7	HGNC	ENSG00000061273	12	0	0	8	5	38.46	-	-	-	A	48184201	G	A	48184201	1	1	490	0	1	0	0	0	0	0	0	0	7063	1073	37	1		1	HDAC7	12	48184201	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3183227	48184201	85667694	469	45144										
DDX23	0	genome.wustl.edu	37	chr12	49239453	49239453	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttctatctttagatggggaaGacttccggtcccggtctcta	10	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	49239453	49239453	G	C	SNP	DDX23	ENST00000308025	human	ensembl	69_37n	-1	known	missense	c.113	p.S38C	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	47	0	0	37	12	24.49	-	-	-	C	49239453	G	C	49239453	3	2	490	1	0	0	0	0	1	0	0	0	4381	942	33	2	2413	2	DDX23	12	49239453	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1055252	49239453	84612442	470	45145										
BCDIN3D	0	genome.wustl.edu	37	chr12	50232712	50232712	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actggatctatgtcgcagcaGaggagacggaattctcttga	12	8	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	50232712	50232712	G	C	SNP	BCDIN3D	ENST00000333924	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	1.000	NULL	pfam_Bin3	-	no_errors	BCDIN3D	HGNC	ENSG00000186666	46	0	0	27	9	25	-	-	-	C	50232712	G	C	50232712	2	2	490	1	0	0	0	0	0	0	0	1	1361	929	33	2		2	BCDIN3D	12	50232712	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	993259	50232712	83619183	471	45146										
POU6F1	0	genome.wustl.edu	37	chr12	51591678	51591678	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaggatggcaggtgtggtctGcagcagcggctgggtctgga	20	7	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	51591678	51591678	G	T	SNP	POU6F1	ENST00000552305	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	POU6F1	HGNC	ENSG00000184271	39	0	0	37	7	15.91	-	-	-	T	51591678	G	T	51591678	1	4	490	0	1	0	0	0	0	0	0	0	12357	1334	46	4		4	POU6F1	12	51591678	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1358966	51591678	82260217	472	45147										
HOXC5	0	genome.wustl.edu	37	chr12	54427141	54427141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accgccccgcctgcagcgccGcggccgctccgggacacgct	13	21	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	54427141	54427141	G	T	SNP	HOXC5	ENST00000312492	human	ensembl	69_37n	1	known	missense	c.235	p.A79S	0.997	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia,pfscan_Homeodomain	-	no_errors	HOXC5	HGNC	ENSG00000172789	41	0	0	54	7	11.48	-	-	-	T	54427141	G	T	54427141	3	4	490	1	0	0	0	0	1	0	0	0	7365	1087	38	3	237	3	HOXC5	12	54427141	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2835463	54427141	79424754	473	45148										
ERBB3	0	genome.wustl.edu	37	chr12	56490388	56490388	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagtgcttggctcgggtgtCtttggaactgtgcacaaagt	13	7	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	56490388	56490388	C	A	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	silent	c.2157	p.V719	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	49	0	0	69	10	12.66	-	-	-	A	56490388	C	A	56490388	2	1	490	1	0	0	0	0	0	0	0	1	5245	900	32	2		2	ERBB3	12	56490388	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2063247	56490388	77361507	474	45149										
SLC39A5	0	genome.wustl.edu	37	chr12	56629024	56629024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgctgcggctcctgggacctCgtctactacggcccttgctg	12	15	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	56629024	56629024	C	T	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	missense	c.718	p.R240C	0.542	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	53	0	0	63	11	14.86	-	-	-	T	56629024	C	T	56629024	3	4	490	1	0	0	0	0	1	0	0	0	14710	884	31	1	732	1	SLC39A5	12	56629024	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	138636	56629024	77222871	475	45150										
NAB2	0	genome.wustl.edu	37	chr12	57485732	57485732	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaatacagcatcatctatgGccgtttcgactctaagcggc	8	12	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57485732	57485732	G	C	SNP	NAB2	ENST00000300131	human	ensembl	69_37n	1	known	missense	c.908	p.G303A	1.000	pfam_NAB_co-repressor_dom	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886	37	0	0	46	16	25.81	-	-	-	C	57485732	G	C	57485732	3	2	490	1	0	0	0	0	1	0	0	0	10204	1203	42	4	914	4	NAB2	12	57485732	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	856708	57485732	76366163	476	45151			3	79		6	6	15739	G		4.711492e-05
NAB2	0	genome.wustl.edu	37	chr12	57486867	57486867	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggagaacagagtcaccctGaaatccagcagcctccccca	8	15	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57486867	57486867	G	A	SNP	NAB2	ENST00000300131	human	ensembl	69_37n	1	known	missense	c.1165	p.E389K	0.998	NULL	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886	34	0	0	46	16	25.81	-	-	-	A	57486867	G	A	57486867	3	1	490	1	0	0	0	0	1	0	0	0	10204	1291	45	2	1183	2	NAB2	12	57486867	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1135	57486867	76365028	477	45152			3	79		6	6	15739	G		4.711492e-05
STAT6	0	genome.wustl.edu	37	chr12	57493638	57493638	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaggttccgtcgggctcattGagaagaaggctagtaacgta	13	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57493638	57493638	G	A	SNP	STAT6	ENST00000553533	human	ensembl	69_37n	-1	putative	nonsense	c.811	p.Q271*	0.844	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_SH2,superfamily_p53-like_TF_DNA-bd,pfscan_SH2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STAT6	HGNC	ENSG00000166888	42	0	0	57	8	12.31	-	-	-	A	57493638	G	A	57493638	4	1	490	1	0	0	0	0	0	1	0	0	15361	1277	45	2	919	2	STAT6	12	57493638	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6771	57493638	76358257	478	45153			3	79		6	6	15739	G		4.711492e-05
STAT6	0	genome.wustl.edu	37	chr12	57496109	57496109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggacacagaacggtgctgGaaggcctccatactgaggct	13	11	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57496109	57496109	G	A	SNP	STAT6	ENST00000553533	human	ensembl	69_37n	-1	putative	missense	c.577	p.P193S	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_SH2,superfamily_p53-like_TF_DNA-bd,pfscan_SH2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STAT6	HGNC	ENSG00000166888	25	0	0	41	15	26.79	-	-	-	A	57496109	G	A	57496109	3	1	490	1	0	0	0	0	1	0	0	0	15361	1165	41	2	1107	2	STAT6	12	57496109	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2471	57496109	76355786	479	45154			3	79		6	6	15739	G		4.711492e-05
STAT6	0	genome.wustl.edu	37	chr12	57498953	57498953	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgctccagccccaggaccctGaggcacactcagctcccgcg	10	20	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57498953	57498953	G	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	nonsense	c.982	p.Q328*	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	48	0	0	45	13	22.41	-	-	-	A	57498953	G	A	57498953	4	1	490	1	0	0	0	0	0	1	0	0	15361	1299	45	2	1617	2	STAT6	12	57498953	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2844	57498953	76352942	480	45155			3	79		6	6	15739	G		4.711492e-05
STAT6	0	genome.wustl.edu	37	chr12	57501470	57501470	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaaggtgctggacagtgtctGaaagtagggcactagccaag	15	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	57501470	57501470	G	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.173	p.S58L	0.974	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	18	0	0	31	10	24.39	-	-	-	A	57501470	G	A	57501470	3	1	490	1	0	0	0	0	1	0	0	0	15361	1294	45	2	2450	2	STAT6	12	57501470	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2517	57501470	76350425	481	45156			3	79		6	6	15739	G		4.711492e-05
CAND1	0	genome.wustl.edu	37	chr12	67691215	67691215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacttcttgttaatttccatCcttcaattctgacctgtcta	4	11	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	67691215	67691215	C	T	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.520	p.P174S	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	46	0	0	45	11	19.64	-	-	-	T	67691215	C	T	67691215	3	4	490	1	0	0	0	0	1	0	0	0	2640	855	30	2	538	2	CAND1	12	67691215	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	10189745	67691215	66160680	482	45157										
PTPRB	0	genome.wustl.edu	37	chr12	71029497	71029497	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accagttttccctccttgttGacatctattttcatccagct	4	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	71029497	71029497	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.405	p.V135	0.998	superfamily_Ricin_B_lectin	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	37	0	0	46	15	24.59	-	-	-	A	71029497	G	A	71029497	2	1	490	1	0	0	0	0	0	0	0	1	12879	1277	45	2		2	PTPRB	12	71029497	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3338282	71029497	62822398	483	45158										
TMCC3	0	genome.wustl.edu	37	chr12	94975969	94975969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggctccattctgctcgatctCtctgagctttcgatgatact	8	12	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	94975969	94975969	C	G	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.424	p.E142Q	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	42	0	0	36	6	14.29	-	-	-	G	94975969	C	G	94975969	3	3	490	1	0	0	0	0	1	0	0	0	16089	922	32	2	1021	2	TMCC3	12	94975969	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	23946472	94975969	38875926	484	45159										
VEZT	0	genome.wustl.edu	37	chr12	95688097	95688097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cattgtacagtagtacctttGaagcagcctactctacacat	6	11	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	95688097	95688097	G	A	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	silent	c.1572	p.L524	0.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	39	0	0	49	11	18.33	-	-	-	A	95688097	G	A	95688097	2	1	490	1	0	0	0	0	0	0	0	1	17253	1281	45	2		2	VEZT	12	95688097	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	712128	95688097	38163798	485	45160										
LTA4H	0	genome.wustl.edu	37	chr12	96412987	96412987	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttttccacctgctctttctCagaccacaccaaagttcttg	4	15	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	96412987	96412987	C	G	SNP	LTA4H	ENST00000228740	human	ensembl	69_37n	-1	known	missense	c.670	p.E224Q	1.000	pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	-	no_errors	LTA4H	HGNC	ENSG00000111144	40	0	0	33	6	15.38	-	-	-	G	96412987	C	G	96412987	3	3	490	1	0	0	0	0	1	0	0	0	9135	835	29	2	1217	2	LTA4H	12	96412987	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	724890	96412987	37438908	486	45161										
APAF1	0	genome.wustl.edu	37	chr12	99043451	99043451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaagctgttagagatcattCccttttagaaggtaagtgtc	10	6	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	99043451	99043451	C	G	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.515	p.S172C	0.000	pfam_NB-ARC,pirsf_Apoptotic_pept-activating_1	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	43	0	0	29	11	27.5	-	-	-	G	99043451	C	G	99043451	3	3	490	1	0	0	0	0	1	0	0	0	756	855	30	2	525	2	APAF1	12	99043451	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2630464	99043451	34808444	487	45162										
SCYL2	0	genome.wustl.edu	37	chr12	100704969	100704969	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caaccaatccttctgaacaaGaggtaatgaaagttttagtc	7	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	100704969	100704969	G	C	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.628	p.E210Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	70	0	0	51	10	16.39	-	-	-	C	100704969	G	C	100704969	3	2	490	1	0	0	0	0	1	0	0	0	14036	943	33	2	642	2	SCYL2	12	100704969	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1661518	100704969	33146926	488	45163										
ANO4	0	genome.wustl.edu	37	chr12	101504219	101504219	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acaactatctttgtggcagcTtttcccctagcaccacttct	5	14	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	101504219	101504219	T	C	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	silent	c.2187	p.A729	0.986	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	37	0	0	61	9	12.86	-	-	-	C	101504219	T	C	101504219	2	2	490	1	0	0	0	0	0	0	0	1	698	1596	56	5		5	ANO4	12	101504219	Silent	SNP	T	TCGA-BH-A0B6-01A-11D-A19Y-09	799250	101504219	32347676	489	45164										
TXNRD1	0	genome.wustl.edu	37	chr12	104720128	104720128	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tattaataatttttcaggtgAtgctggcaataggaagagat	10	3	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	104720128	104720128	A	G	SNP	TXNRD1	ENST00000429002	human	ensembl	69_37n	1	known	missense	c.1312	p.M438V	0.287	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	78	0	0	69	9	11.54	-	-	-	G	104720128	A	G	104720128	3	3	490	1	0	0	0	0	1	0	0	0	16904	333	12	5	1372	5	TXNRD1	12	104720128	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	3215909	104720128	29131767	490	45165										
ATXN2	0	genome.wustl.edu	37	chr12	111923576	111923576	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggtgcaaaacaaacaggctGagtataaactggagttggct	12	6	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	111923576	111923576	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	nonsense	c.2878	p.Q960*	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	29	0	0	32	10	23.81	-	-	-	A	111923576	G	A	111923576	4	1	490	1	0	0	0	0	0	1	0	0	1215	1299	45	2	1099	2	ATXN2	12	111923576	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7203448	111923576	21928319	491	45166										
NAA25	0	genome.wustl.edu	37	chr12	112492334	112492334	+	Missense_Mutation	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctatgggttaatccctcttCcagcaaagtcagggcctgcc							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	112492334	112492334	C	T	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	missense	c.1486	p.E496K	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	38	0	0	24	6	20	-	-	-	T	112492334	C	T	112492334	3	4	490	1	0	0	0	0	1	0	0	0	10193	864	30	2	1476	2	NAA25	12	112492334	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	568758	112492334	21359561	492	45167	371	2								
NAA25	0	genome.wustl.edu	37	chr12	112492344	112492344	+	Silent	SNP	C	C	G													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aatccctcttccagcaaagtCagggcctgccacacagtggt							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	112492344	112492344	C	G	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	silent	c.1476	p.L492	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	38	0	0	24	5	17.24	-	-	-	G	112492344	C	G	112492344	2	3	490	1	0	0	0	0	0	0	0	1	10193	813	29	2		2	NAA25	12	112492344	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	10	112492344	21359551	493	45168	371	2								
TRAFD1	0	genome.wustl.edu	37	chr12	112572675	112572675	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acatggctgcagaacactgtCaggtgagccaccaagtactc	10	12	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	112572675	112572675	C	G	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.181	p.Q61E	1.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	48	0	0	52	14	21.21	-	-	-	G	112572675	C	G	112572675	3	3	490	1	0	0	0	0	1	0	0	0	16543	827	29	2	187	2	TRAFD1	12	112572675	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	80331	112572675	21279220	494	45169										
IQCD	0	genome.wustl.edu	37	chr12	113633544	113633544	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccgtaccatgcgcaccatctCctgctctgcctccatccttt	5	19	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	113633544	113633544	C	G	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	missense	c.1186	p.E396Q	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	83	0	0	98	18	15.52	-	-	-	G	113633544	C	G	113633544	3	3	490	1	0	0	0	0	1	0	0	0	7859	864	30	2	167	2	IQCD	12	113633544	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1060869	113633544	20218351	495	45170										
PLBD2	0	genome.wustl.edu	37	chr12	113824889	113824889	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggactccatggtcaggctGatgaggtaggtgccagttgg	16	7	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	113824889	113824889	G	A	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	silent	c.1434	p.L478	0.003	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	32	0	0	30	6	16.67	-	-	-	A	113824889	G	A	113824889	2	1	490	1	0	0	0	0	0	0	0	1	12100	1277	45	2		2	PLBD2	12	113824889	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	191345	113824889	20027006	496	45171										
NOS1	0	genome.wustl.edu	37	chr12	117718580	117718580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagggtggagccgtcaggctGcttgtagccagcgtagcgga	17	10	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	12	117718580	117718580	G	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.1474	p.Q492K	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	62	0	0	86	10	10.42	-	-	-	T	117718580	G	T	117718580	3	4	490	1	0	0	0	0	1	0	0	0	10613	1328	46	4	2918	4	NOS1	12	117718580	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3893691	117718580	16133315	497	45172										
POLR1D	0	genome.wustl.edu	37	chr13	28196057	28196057	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctgcttcgcctccgcgcctCgcgctatgggacagagcccc	11	19	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	28196057	28196057	C	G	SNP	POLR1D	ENST00000465887	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR1D	HGNC	ENSG00000186184	68	0	0	44	24	35.29	-	-	-	G	28196057	C	G	28196057	1	3	490	0	1	0	0	0	0	0	0	0	12286	899	31	3		3	POLR1D	13	28196057	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		28196057	86973821	498	45173										
PAN3	0	genome.wustl.edu	37	chr13	28855481	28855481	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aatggaagactgtttaggctCctagcaaaattgggaacaat	10	6	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	28855481	28855481	C	G	SNP	PAN3	ENST00000380958	human	ensembl	69_37n	1	known	silent	c.2349	p.L783	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_cat_dom	-	no_errors	PAN3	HGNC	ENSG00000152520	25	0	0	20	6	23.08	-	-	-	G	28855481	C	G	28855481	2	3	490	1	0	0	0	0	0	0	0	1	11488	842	30	2		2	PAN3	13	28855481	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	659424	28855481	86314397	499	45174										
B3GALTL	0	genome.wustl.edu	37	chr13	31903641	31903641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctctatttttcctgcaggctCggccggtggattaccctaag	10	12	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	31903641	31903641	C	T	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	missense	c.1333	p.R445W	0.998	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	74	0	0	54	7	11.48	-	-	-	T	31903641	C	T	31903641	3	4	490	1	0	0	0	0	1	0	0	0	1256	875	31	1	1391	1	B3GALTL	13	31903641	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3048160	31903641	83266237	500	45175										
DCLK1	0	genome.wustl.edu	37	chr13	36410237	36410237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcttccgactttatatcgttCtgttattgtagctggaatct	7	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	36410237	36410237	C	G	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	missense	c.1162	p.E388Q	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	72	0	0	61	23	27.38	-	-	-	G	36410237	C	G	36410237	3	3	490	1	0	0	0	0	1	0	0	0	4322	922	32	2	1071	2	DCLK1	13	36410237	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4506596	36410237	78759641	501	45176										
ELF1	0	genome.wustl.edu	37	chr13	41517240	41517240	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggacaagtagccttgtcctgGagcagtgccagtaaaaactc	11	10	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	41517240	41517240	G	T	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	silent	c.654	p.L218	0.494	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	39	0	0	43	9	17.31	-	-	-	T	41517240	G	T	41517240	2	4	490	1	0	0	0	0	0	0	0	1	5090	1161	41	2		2	ELF1	13	41517240	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5107003	41517240	73652638	502	45177										
NAA16	0	genome.wustl.edu	37	chr13	41946442	41946442	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcatttgaaatatattttaGaaaaggtaataaatagtttg	7	1	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	41946442	41946442	G	C	SNP	NAA16	ENST00000379406	human	ensembl	69_37n	1	known	missense	c.2051	p.R684T	1.000	smart_TPR_repeat,pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR-1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766	37	0	0	31	10	24.39	-	-	-	C	41946442	G	C	41946442	3	2	490	1	0	0	0	0	1	0	0	0	10191	942	33	2	2146	2	NAA16	13	41946442	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	429202	41946442	73223436	503	45178										
AKAP11	0	genome.wustl.edu	37	chr13	42873670	42873670	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggacataaagaactaccttCtgtgaaaacttcagtcacaa	7	9	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	42873670	42873670	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.788	p.S263F	0.997	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	22	0	0	23	4	14.81	-	-	-	T	42873670	C	T	42873670	3	4	490	1	0	0	0	0	1	0	0	0	447	913	32	2	810	2	AKAP11	13	42873670	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	927228	42873670	72296208	504	45179										
TSC22D1	0	genome.wustl.edu	37	chr13	45010711	45010711	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaagaaattgaaaaatgtctCagttggtaaactcctagatc	7	6	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	45010711	45010711	C	T	SNP	TSC22D1	ENST00000261489	human	ensembl	69_37n	-1	known	silent	c.54	p.L18	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	24	0	0	26	4	13.33	-	-	-	T	45010711	C	T	45010711	2	4	490	1	0	0	0	0	0	0	0	1	16703	813	29	2		2	TSC22D1	13	45010711	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2137041	45010711	70159167	505	45180										
TSC22D1	0	genome.wustl.edu	37	chr13	45010762	45010762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtctacaccattgggatttCatgcaattgcagccaaaaac	8	10	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	45010762	45010762	C	T	SNP	TSC22D1	ENST00000261489	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	22	0	0	28	6	17.65	-	-	-	T	45010762	C	T	45010762	3	4	490	1	0	0	0	0	1	0	0	0	16703	826	29	2	443	2	TSC22D1	13	45010762	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	51	45010762	70159116	506	45181										
WDFY2	0	genome.wustl.edu	37	chr13	52158851	52158851	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggagatccagcccaagcctCtgacccgcaagccgatcctg	10	17	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	52158851	52158851	C	G	SNP	WDFY2	ENST00000298125	human	ensembl	69_37n	1	known	missense	c.28	p.L10V	0.998	NULL	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY2	HGNC	ENSG00000139668	51	0	0	36	19	34.55	-	-	-	G	52158851	C	G	52158851	3	3	490	1	0	0	0	0	1	0	0	0	17366	912	32	2	30	2	WDFY2	13	52158851	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7148089	52158851	63011027	507	45182										
PCDH9	0	genome.wustl.edu	37	chr13	67205531	67205531	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcagggagatgaaacgtaaCacggcgctgcgactacaaag	12	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	67205531	67205531	C	A	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.3151	p.V1051F	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	38	0	0	27	20	42.55	-	-	-	A	67205531	C	A	67205531	3	1	490	1	0	0	0	0	1	0	0	0	11591	478	17	4	570	4	PCDH9	13	67205531	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	15046680	67205531	47964347	508	45183										
UCHL3	0	genome.wustl.edu	37	chr13	76141388	76141388	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggatcaaccttgaaaaaattCctggaggaatctgtgtcaat	9	7	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	76141388	76141388	C	A	SNP	UCHL3	ENST00000377595	human	ensembl	69_37n	1	known	missense	c.366	p.F122L	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL3	HGNC	ENSG00000118939	71	0	0	42	14	25	-	-	-	A	76141388	C	A	76141388	3	1	490	1	0	0	0	0	1	0	0	0	17018	854	30	2	384	2	UCHL3	13	76141388	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8935857	76141388	39028490	509	45184										
DNAJC3	0	genome.wustl.edu	37	chr13	96329521	96329521	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctcggacatggtggccccCggctccgtgaccagccggct	13	18	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	96329521	96329521	C	T	SNP	DNAJC3	ENST00000376795	human	ensembl	69_37n	1	known	silent	c.12	p.P4	0.994	NULL	pfam_TPR-1,pfam_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC3	HGNC	ENSG00000102580	35	0	0	43	11	20.37	-	-	-	T	96329521	C	T	96329521	2	4	490	1	0	0	0	0	0	0	0	1	4682	639	23	1		1	DNAJC3	13	96329521	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	20188133	96329521	18840357	510	45185										
ING1	0	genome.wustl.edu	37	chr13	111371686	111371686	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcgcgctgatccgcagccagGagctgggcgacgagaagatc	16	12	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	111371686	111371686	G	C	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	missense	c.676	p.E226Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	52	0	0	66	12	15.38	-	-	-	C	111371686	G	C	111371686	3	2	490	1	0	0	0	0	1	0	0	0	7789	1175	41	2	830	2	ING1	13	111371686	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	15042165	111371686	3798192	511	45186										
ARHGEF7	0	genome.wustl.edu	37	chr13	111955427	111955427	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggaaagtcctgaagaacatGaatgatcctgcctgggatga	12	7	0	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	13	111955427	111955427	G	A	SNP	ARHGEF7	ENST00000370623	human	ensembl	69_37n	1	known	missense	c.2163	p.M721I	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CH-domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	28	0	0	14	7	33.33	-	-	-	A	111955427	G	A	111955427	3	1	490	1	0	0	0	0	1	0	0	0	913	1290	45	2	2747	2	ARHGEF7	13	111955427	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	583741	111955427	3214451	512	45187										
ACIN1	0	genome.wustl.edu	37	chr14	23564243	23564243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttggctaggcctcgctgctCcagtgcggccttcaggtcgg	14	14	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	23564243	23564243	C	T	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.253	p.E85K	1.000	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	62	0	0	63	7	10	-	-	-	T	23564243	C	T	23564243	3	4	490	1	0	0	0	0	1	0	0	0	142	864	30	2	3995	2	ACIN1	14	23564243	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		23564243	83785297	513	45188										
DHRS4	0	genome.wustl.edu	37	chr14	24423024	24423024	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaggcggggctgctaggcctCtgtgcccgggcttggaattc	16	11	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	24423024	24423024	C	G	SNP	DHRS4	ENST00000313250	human	ensembl	69_37n	1	known	silent	c.27	p.L9	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS4	HGNC	ENSG00000157326	84	0	0	74	22	22.92	-	-	-	G	24423024	C	G	24423024	2	3	490	1	0	0	0	0	0	0	0	1	4528	900	32	2		2	DHRS4	14	24423024	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	858781	24423024	82926516	514	45189										
RNF31	0	genome.wustl.edu	37	chr14	24617260	24617260	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccgcaaccttctcagccctCagcggcctcggtactggcgt	11	17	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	24617260	24617260	C	T	SNP	RNF31	ENST00000324103	human	ensembl	69_37n	1	known	nonsense	c.268	p.Q90*	0.991	pfam_PUB_domain	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098	63	0	0	69	11	13.75	-	-	-	T	24617260	C	T	24617260	4	4	490	1	0	0	0	0	0	1	0	0	13573	827	29	2	274	2	RNF31	14	24617260	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	194236	24617260	82732280	515	45190										
STRN3	0	genome.wustl.edu	37	chr14	31364699	31364699	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaaagcaacatcataaattGattcatccaatttctttctg	5	8	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	31364699	31364699	G	C	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	nonsense	c.2312	p.S771*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	50	0	0	20	11	35.48	-	-	-	C	31364699	G	C	31364699	4	2	490	1	0	0	0	0	0	1	0	0	15421	1294	45	2	85	2	STRN3	14	31364699	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6747439	31364699	75984841	516	45191										
HEATR5A	0	genome.wustl.edu	37	chr14	31777119	31777119	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgatcactgccaatttttgAtctgggccaaggtacatcta	8	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	31777119	31777119	A	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.4780	p.S1594T	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	41	0	0	47	6	11.32	-	-	-	T	31777119	A	T	31777119	3	4	490	1	0	0	0	0	1	0	0	0	7082	333	12	5	1370	5	HEATR5A	14	31777119	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	412420	31777119	75572421	517	45192										
CFL2	0	genome.wustl.edu	37	chr14	35182735	35182735	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcatatcattaaaaactttGatgacttcatcattcactgt	3	8	5	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	35182735	35182735	G	A	SNP	CFL2	ENST00000298159	human	ensembl	69_37n	-1	known	silent	c.36	p.I12	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	CFL2	HGNC	ENSG00000165410	28	0	0	17	4	19.05	-	-	-	A	35182735	G	A	35182735	2	1	490	1	0	0	0	0	0	0	0	1	3320	1280	45	2		2	CFL2	14	35182735	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3405616	35182735	72166805	518	45193										
KIAA0391	0	genome.wustl.edu	37	chr14	35596720	35596720	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgtggaaaaaccatagagtCtattcagctgagtccagaag	10	8	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	35596720	35596720	C	T	SNP	KIAA0391	ENST00000534898	human	ensembl	69_37n	1	known	missense	c.1070	p.S357F	1.000	NULL	NULL	-	no_errors	RP11-173D9.3	Clone_based_vega_gene	ENSG00000100890	73	0	0	59	7	10.45	-	-	-	T	35596720	C	T	35596720	3	4	490	1	0	0	0	0	1	0	0	0	8224	913	32	2	1080	2	KIAA0391	14	35596720	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	413985	35596720	71752820	519	45194										
PSMA6	0	genome.wustl.edu	37	chr14	35782079	35782079	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atttaattagggtcttttctCtttttaggtatgattttaat	6	3	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	35782079	35782079	C	G	SNP	PSMA6	ENST00000553809	human	ensembl	69_37n	1	novel	silent	c.420	p.L140	0.014	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902	34	0	0	37	8	17.78	-	-	-	G	35782079	C	G	35782079	2	3	490	1	0	0	0	0	0	0	0	1	12751	928	32	2		2	PSMA6	14	35782079	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	185359	35782079	71567461	520	45195										
C14orf183	0	genome.wustl.edu	37	chr14	50550436	50550436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgttggtctgcgttcctggaGgggtgtgggaggagactggc	20	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	50550436	50550436	G	A	SNP	C14orf183	ENST00000305273	human	ensembl	69_37n	-1	novel	missense	c.908	p.P303L	0.015	NULL	NULL	-	no_errors	C14orf183	HGNC	ENSG00000168260	40	0	0	45	21	31.82	-	-	-	A	50550436	G	A	50550436	3	1	490	1	0	0	0	0	1	0	0	0	1778	1000	35	4	69	4	C14orf183	14	50550436	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	14768357	50550436	56799104	521	45196										
FRMD6	0	genome.wustl.edu	37	chr14	52169259	52169259	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caatttgggcctcctatgatCatccacttccgtgtgcagta	8	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	52169259	52169259	C	T	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	silent	c.324	p.I108	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	48	0	0	42	7	14.29	-	-	-	T	52169259	C	T	52169259	2	4	490	1	0	0	0	0	0	0	0	1	6103	816	29	2		2	FRMD6	14	52169259	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1618823	52169259	55180281	522	45197										
HIF1A	0	genome.wustl.edu	37	chr14	62162402	62162402	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcacgaggggtttcccgcctCgcacccccacctctggactt	9	18	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	62162402	62162402	C	T	SNP	HIF1A	ENST00000553999	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	HIF1A	HGNC	ENSG00000100644	22	0	0	20	9	31.03	-	-	-	T	62162402	C	T	62162402	1	4	490	0	1	0	0	0	0	0	0	0	7154	899	31	1		1	HIF1A	14	62162402	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9993143	62162402	45187138	523	45198										
SYNE2	0	genome.wustl.edu	37	chr14	64604687	64604687	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cacaggctgcaagctcttctCaagcatctgctcaggtcagc	9	14	5	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	64604687	64604687	C	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.14829	p.L4943	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	36	0	0	30	9	23.08	-	-	-	G	64604687	C	G	64604687	2	3	490	1	0	0	0	0	0	0	0	1	15538	813	29	2		2	SYNE2	14	64604687	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2442285	64604687	42744853	524	45199										
MTHFD1	0	genome.wustl.edu	37	chr14	64924931	64924931	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taatgcttttttacatcctaGatgagcacaatgcctggact	7	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	64924931	64924931	G	A	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	splice_site	c.2887-1	e27-1	1.000	-	-	-	no_errors	MTHFD1	HGNC	ENSG00000100714	40	0	0	25	9	26.47	-	-	-	A	64924931	G	A	64924931	5	1	490	1	0	0	0	0	0	0	1	0	9999	956	33	2	2824	2	MTHFD1	14	64924931	Splice_Site	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	320244	64924931	42424609	525	45200										
TTC9	0	genome.wustl.edu	37	chr14	71137836	71137836	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagctgacggagatgaaactCagccgatgctcccagagaga	12	11	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	71137836	71137836	C	G	SNP	TTC9	ENST00000256367	human	ensembl	69_37n	1	known	silent	c.633	p.L211	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9	HGNC	ENSG00000133985	31	0	0	44	15	25.42	-	-	-	G	71137836	C	G	71137836	2	3	490	1	0	0	0	0	0	0	0	1	16812	813	29	2		2	TTC9	14	71137836	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6212905	71137836	36211704	526	45201										
ACOT4	0	genome.wustl.edu	37	chr14	74058884	74058884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctgggcggcagcttcgcggGactcgagcccatggggctgc	18	13	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	74058884	74058884	G	A	SNP	ACOT4	ENST00000326303	human	ensembl	69_37n	1	known	missense	c.221	p.G74E	1.000	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465	38	0	0	44	6	12	-	-	-	A	74058884	G	A	74058884	3	1	490	1	0	0	0	0	1	0	0	0	153	1174	41	2	223	2	ACOT4	14	74058884	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2921048	74058884	33290656	527	45202										
MLH3	0	genome.wustl.edu	37	chr14	75509098	75509098	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttacctctgttatcctgtctCatcacagtcctctctgctcg	5	15	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	75509098	75509098	C	T	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.3363	p.M1121I	0.976	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	62	0	0	61	12	16.44	-	-	-	T	75509098	C	T	75509098	3	4	490	1	0	0	0	0	1	0	0	0	9689	826	29	2	1042	2	MLH3	14	75509098	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1450214	75509098	31840442	528	45203										
CCDC88C	0	genome.wustl.edu	37	chr14	91770047	91770047	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tccttccccaggccctacctCtccccgagctccttgtgctc	6	21	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	91770047	91770047	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	silent	c.3633	p.E1211	0.993	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	50	0	0	36	6	14.29	-	-	-	T	91770047	C	T	91770047	2	4	490	1	0	0	0	0	0	0	0	1	2892	912	32	2		2	CCDC88C	14	91770047	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	16260949	91770047	15579493	529	45204										
PPP2R5C	0	genome.wustl.edu	37	chr14	102349833	102349833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcttaaaaccacccttcacaGaatctatgggaaattcctag	5	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	102349833	102349833	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	69_37n	1	known	missense	c.656	p.R219K	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	65	0	0	42	12	22.22	-	-	-	A	102349833	G	A	102349833	3	1	490	1	0	0	0	0	1	0	0	0	12471	942	33	2	950	2	PPP2R5C	14	102349833	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10579786	102349833	4999707	530	45205										
TECPR2	0	genome.wustl.edu	37	chr14	102881013	102881013	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtgttggaggagccatcttCcattgtgcagctggattata	13	7	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	102881013	102881013	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	69_37n	1	known	missense	c.521	p.S174F	0.999	superfamily_WD40_repeat_dom	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	48	0	0	38	5	11.63	-	-	-	T	102881013	C	T	102881013	3	4	490	1	0	0	0	0	1	0	0	0	15839	855	30	2	535	2	TECPR2	14	102881013	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	531180	102881013	4468527	531	45206										
TECPR2	0	genome.wustl.edu	37	chr14	102898394	102898394	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagattcaacgccatcagctCagaggactttgaccaggagc	11	11	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	102898394	102898394	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	69_37n	1	known	missense	c.1346	p.S449L	0.899	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	28	0	0	32	11	25.58	-	-	-	T	102898394	C	T	102898394	3	4	490	1	0	0	0	0	1	0	0	0	15839	838	29	2	1372	2	TECPR2	14	102898394	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17381	102898394	4451146	532	45207										
TRMT61A	0	genome.wustl.edu	37	chr14	103999138	103999138	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgtcttcctggacatcccatCaccctgggaggccgtgggcc	12	16	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	103999138	103999138	C	T	SNP	TRMT61A	ENST00000389749	human	ensembl	69_37n	1	known	missense	c.551	p.S184L	0.997	pfam_tRNA_MeTrfase_GCD14,pirsf_tRNA_MeTrfase_GCD14	pfam_tRNA_MeTrfase_GCD14,pirsf_tRNA_MeTrfase_GCD14	-	no_errors	TRMT61A	HGNC	ENSG00000166166	58	0	0	48	17	26.15	-	-	-	T	103999138	C	T	103999138	3	4	490	1	0	0	0	0	1	0	0	0	16665	838	29	2	557	2	TRMT61A	14	103999138	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1100744	103999138	3350402	533	45208										
AHNAK2	0	genome.wustl.edu	37	chr14	105414834	105414834	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcttgaacttgggcattttGaacttgctgtctttggcagt	10	7	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	14	105414834	105414834	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.6954	p.F2318L	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	77	0	0	93	28	23.14	-	-	-	C	105414834	G	C	105414834	3	2	490	1	0	0	0	0	1	0	0	0	415	1281	45	2	10437	2	AHNAK2	14	105414834	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1415696	105414834	1934706	534	45209										
HERC2	0	genome.wustl.edu	37	chr15	28436126	28436126	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttacctctgtgcagtcattCagaaggggcactgtggtgtc	12	10	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	28436126	28436126	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.8634	p.L2878	0.628	superfamily_Galactose-bd-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	79	0	0	53	9	14.52	-	-	-	T	28436126	C	T	28436126	2	4	490	1	0	0	0	0	0	0	0	1	7109	813	29	2		2	HERC2	15	28436126	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		28436126	74095266	535	45210										
RYR3	0	genome.wustl.edu	37	chr15	34113753	34113753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccccatggtggttgagacgCtgaagctggggatcgccatt	15	10	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	34113753	34113753	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.10945	p.L3649	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	32	0	0	29	8	21.62	-	-	-	T	34113753	C	T	34113753	2	4	490	1	0	0	0	0	0	0	0	1	13856	796	28	4		4	RYR3	15	34113753	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5677627	34113753	68417639	536	45211										
AQR	0	genome.wustl.edu	37	chr15	35210546	35210546	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggcatctggttcaactgctGaatctgagaaattcgacgtt	10	8	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	35210546	35210546	G	A	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	nonsense	c.1255	p.Q419*	1.000	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	36	0	0	18	9	33.33	-	-	-	A	35210546	G	A	35210546	4	1	490	1	0	0	0	0	0	1	0	0	837	1299	45	2	3286	2	AQR	15	35210546	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1096793	35210546	67320846	537	45212										
BAHD1	0	genome.wustl.edu	37	chr15	40750963	40750963	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctgacctgcccaagcccccCagcccggccccatccagtga	8	22	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	40750963	40750963	C	G	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	silent	c.300	p.P100	0.671	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	81	0	0	50	9	15.25	-	-	-	G	40750963	C	G	40750963	2	3	490	1	0	0	0	0	0	0	0	1	1301	581	21	4		4	BAHD1	15	40750963	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5540417	40750963	61780429	538	45213										
INO80	0	genome.wustl.edu	37	chr15	41319819	41319819	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gactggccacacacaaaaaaGatggcagctcagtgagcagg	12	10	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	41319819	41319819	G	C	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.3023	p.S1008C	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	41	0	0	26	4	13.33	-	-	-	C	41319819	G	C	41319819	3	2	490	1	0	0	0	0	1	0	0	0	7800	942	33	2	1695	2	INO80	15	41319819	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	568856	41319819	61211573	539	45214										
MGA	0	genome.wustl.edu	37	chr15	41961442	41961442	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggataacaggtttagattCaaatttgaagtatattcttg	8	3	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	41961442	41961442	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	nonsense	c.350	p.S117*	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	110	0	0	78	13	14.29	-	-	-	G	41961442	C	G	41961442	4	3	490	1	0	0	0	0	0	1	0	0	9611	838	29	2	352	2	MGA	15	41961442	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	641623	41961442	60569950	540	45215										
TMEM62	0	genome.wustl.edu	37	chr15	43473405	43473405	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggttttttggtgaaatcattGatggcaaatttggttgctgc	12	4	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	43473405	43473405	G	C	SNP	TMEM62	ENST00000260403	human	ensembl	69_37n	1	known	missense	c.1513	p.D505H	1.000	NULL	superfamily_Cadherin-like	-	no_errors	TMEM62	HGNC	ENSG00000137842	113	0	0	86	13	13.13	-	-	-	C	43473405	G	C	43473405	3	2	490	1	0	0	0	0	1	0	0	0	16284	1290	45	2	1563	2	TMEM62	15	43473405	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1511963	43473405	59057987	541	45216										
SERF2	0	genome.wustl.edu	37	chr15	44091854	44091854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttccagccatttgggattgcCgcccactgacaacttagtag	9	12	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	44091854	44091854	C	T	SNP	SERF2	ENST00000409291	human	ensembl	69_37n	1	putative	missense	c.112	p.R38C	0.000	NULL	NULL	-	no_errors	SERF2	HGNC	ENSG00000140264	40	0	0	36	8	18.18	-	-	-	T	44091854	C	T	44091854	3	4	490	1	0	0	0	0	1	0	0	0	14164	667	23	1		1	SERF2	15	44091854	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	618449	44091854	58439538	542	45217										
SPG11	0	genome.wustl.edu	37	chr15	44859755	44859755	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctccaggacggcagcgtttGatgtagtccagcagggctgt	14	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	44859755	44859755	G	C	SNP	SPG11	ENST00000559511	human	ensembl	69_37n	-1	novel	nonsense	c.992	p.S331*	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPG11	HGNC	ENSG00000104133	48	0	0	60	10	14.29	-	-	-	C	44859755	G	C	44859755	4	2	490	1	0	0	0	0	0	1	0	0	15132	1280	45	2	730	2	SPG11	15	44859755	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	767901	44859755	57671637	543	45218										
MAPK6	0	genome.wustl.edu	37	chr15	52338064	52338064	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggacggtagctttgattgtGattgtggtgagctggagcca	16	5	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	52338064	52338064	G	C	SNP	MAPK6	ENST00000558063	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	MAPK6	HGNC	ENSG00000069956	50	0	0	39	5	11.36	-	-	-	C	52338064	G	C	52338064	1	2	490	0	1	0	0	0	0	0	0	0	9352	1305	45	2		2	MAPK6	15	52338064	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7478309	52338064	50193328	544	45219										
MYO5C	0	genome.wustl.edu	37	chr15	52556402	52556402	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcacactaactgaggacctCtcgttgcccaccgcggtgat	9	15	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	52556402	52556402	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	silent	c.1032	p.E344	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	35	0	0	30	6	16.67	-	-	-	T	52556402	C	T	52556402	2	4	490	1	0	0	0	0	0	0	0	1	10152	912	32	2		2	MYO5C	15	52556402	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	218338	52556402	49974990	545	45220										
LCTL	0	genome.wustl.edu	37	chr15	66844149	66844149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttctcccattcaaacttatCcaacagagaccaggaagtat	5	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	66844149	66844149	C	G	SNP	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	missense	c.1375	p.D459H	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	34	0	0	19	8	29.63	-	-	-	G	66844149	C	G	66844149	3	3	490	1	0	0	0	0	1	0	0	0	8748	855	30	2	340	2	LCTL	15	66844149	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	14287747	66844149	35687243	546	45221										
CORO2B	0	genome.wustl.edu	37	chr15	69003908	69003908	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctggaacctggatgtgggtGagccggtgaagatgattgac	16	6	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	69003908	69003908	G	A	SNP	CORO2B	ENST00000566799	human	ensembl	69_37n	1	known	missense	c.511	p.E171K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2B	HGNC	ENSG00000103647	39	0	0	37	8	17.78	-	-	-	A	69003908	G	A	69003908	3	1	490	1	0	0	0	0	1	0	0	0	3787	1291	45	2	529	2	CORO2B	15	69003908	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2159759	69003908	33527484	547	45222										
CLK3	0	genome.wustl.edu	37	chr15	74919701	74919701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgctaccttagttctgcatGagaatcagctgacccataca	7	12	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	74919701	74919701	G	A	SNP	CLK3	ENST00000395066	human	ensembl	69_37n	1	known	missense	c.1270	p.E424K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK3	HGNC	ENSG00000179335	44	0	0	35	5	12.5	-	-	-	A	74919701	G	A	74919701	3	1	490	1	0	0	0	0	1	0	0	0	3568	1291	45	2	1300	2	CLK3	15	74919701	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5915793	74919701	27611691	548	45223										
HMG20A	0	genome.wustl.edu	37	chr15	77771569	77771569	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cattgactcatatatgaacaGactgcacagtattattttag	6	7	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	77771569	77771569	G	A	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	1	known	missense	c.956	p.R319K	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20A	HGNC	ENSG00000140382	39	0	0	21	4	16	-	-	-	A	77771569	G	A	77771569	3	1	490	1	0	0	0	0	1	0	0	0	7272	942	33	2	986	2	HMG20A	15	77771569	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2851868	77771569	24759823	549	45224										
IREB2	0	genome.wustl.edu	37	chr15	78765656	78765656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tactttaccagaggtggttgGatgtgagttaactgggtcat	13	5	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	78765656	78765656	G	A	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.956	p.G319E	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	87	0	0	78	14	15.22	-	-	-	A	78765656	G	A	78765656	3	1	490	1	0	0	0	0	1	0	0	0	7880	1174	41	2	986	2	IREB2	15	78765656	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	994087	78765656	23765736	550	45225										
IL16	0	genome.wustl.edu	37	chr15	81592433	81592433	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacccaggtgtgtctgagtcCcctcccccagggcggcagcc	13	17	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	81592433	81592433	C	A	SNP	IL16	ENST00000558332	human	ensembl	69_37n	1	putative	missense	c.677	p.P226H	0.282	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,prints_Interleukin-16,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IL16	HGNC	ENSG00000172349	34	0	0	28	7	20	-	-	-	A	81592433	C	A	81592433	3	1	490	1	0	0	0	0	1	0	0	0	7687	610	22	4	2816	4	IL16	15	81592433	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2826777	81592433	20938959	551	45226										
ALDH1A3	0	genome.wustl.edu	37	chr15	101447368	101447368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tactgaagttcaaaagtatcGaagaagtgataaaaagagcg	10	4	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	101447368	101447368	G	A	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	missense	c.1276	p.E426K	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	39	0	0	34	5	12.82	-	-	-	A	101447368	G	A	101447368	3	1	490	1	0	0	0	0	1	0	0	0	492	1059	37	1	1318	1	ALDH1A3	15	101447368	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	19854935	101447368	1084024	552	45227										
LRRK1	0	genome.wustl.edu	37	chr15	101555579	101555579	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attgcctttttcaccaccagAggtcgccagcgctccgggac	10	15	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	15	101555579	101555579	A	G	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	silent	c.1581	p.R527	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	41	0	0	31	8	20.51	-	-	-	G	101555579	A	G	101555579	2	3	490	1	0	0	0	0	0	0	0	1	9098	301	11	5		5	LRRK1	15	101555579	Silent	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	108211	101555579	975813	553	45228										
MPG	0	genome.wustl.edu	37	chr16	135462	135462	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaggtctggagaccatgcgtCagcttcgcagcaccctccgg	12	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	135462	135462	C	T	SNP	MPG	ENST00000219431	human	ensembl	69_37n	1	known	nonsense	c.583	p.Q195*	0.998	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	-	no_errors	MPG	HGNC	ENSG00000103152	73	0	0	93	12	11.43	-	-	-	T	135462	C	T	135462	4	4	490	1	0	0	0	0	0	1	0	0	9796	827	29	2	625	2	MPG	16	135462	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		135462	90219291	554	45229										
LUC7L	0	genome.wustl.edu	37	chr16	278904	278904	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttcccaaggagcctcggaaGagttctgccacccggctgcc	11	16	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	278904	278904	G	C	SNP	LUC7L	ENST00000494366	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	LUC7L	HGNC	ENSG00000007392	22	0	0	23	4	14.81	-	-	-	C	278904	G	C	278904	1	2	490	0	1	0	0	0	0	0	0	0	9148	957	33	2		2	LUC7L	16	278904	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	143442	278904	90075849	555	45230										
SOLH	0	genome.wustl.edu	37	chr16	599151	599151	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agggccacgtggtctgtgttCcacacactgcggccctcaga	12	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	599151	599151	C	T	SNP	SOLH	ENST00000219611	human	ensembl	69_37n	1	known	silent	c.1608	p.F536	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	SOLH	HGNC	ENSG00000103326	49	0	0	39	15	27.78	-	-	-	T	599151	C	T	599151	2	4	490	1	0	0	0	0	0	0	0	1	15014	854	30	2		2	SOLH	16	599151	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	320247	599151	89755602	556	45231										
STUB1	0	genome.wustl.edu	37	chr16	731457	731457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcttacagcctggccaaggaGcagcggctgaacttcgggga	15	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	731457	731457	G	A	SNP	STUB1	ENST00000566408	human	ensembl	69_37n	1	putative	missense	c.95	p.S32N	1.000	pfscan_TPR-contain_dom	pfam_Ubox_domain,smart_Ubox_domain,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STUB1	HGNC	ENSG00000103266	28	0	0	34	8	19.05	-	-	-	A	731457	G	A	731457	3	1	490	1	0	0	0	0	1	0	0	0	15426	962	34	4	388	4	STUB1	16	731457	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	132306	731457	89623296	557	45232										
CHTF18	0	genome.wustl.edu	37	chr16	845741	845741	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagacgctggtgtccggcatCgcgccagccacgcgcagccg	14	17	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	845741	845741	C	A	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	silent	c.2859	p.I953	0.001	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	31	0	0	40	11	21.57	-	-	-	A	845741	C	A	845741	2	1	490	1	0	0	0	0	0	0	0	1	3443	874	31	3		3	CHTF18	16	845741	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	114284	845741	89509012	558	45233										
CLCN7	0	genome.wustl.edu	37	chr16	1511649	1511649	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgttgtgtgggatctccttGgggaagggatgtggagggtc	19	5	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	1511649	1511649	G	A	SNP	CLCN7	ENST00000382745	human	ensembl	69_37n	-1	known	silent	c.240	p.P80	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	47	0	0	51	13	20.31	-	-	-	A	1511649	G	A	1511649	2	1	490	1	0	0	0	0	0	0	0	1	3498	1335	47	4		4	CLCN7	16	1511649	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	665908	1511649	88843104	559	45234										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1818302	1818302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcggccagcagcttcatccCctactgctccatggcccagg	11	17	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	1818302	1818302	C	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.3662	p.P1221L	0.997	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	36	0	0	27	13	32.5	-	-	-	T	1818302	C	T	1818302	3	4	490	1	0	0	0	0	1	0	0	0	9357	623	22	4	3796	4	MAPK8IP3	16	1818302	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	306653	1818302	88536451	560	45235										
MEFV	0	genome.wustl.edu	37	chr16	3294475	3294475	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctcccaagcccatctacctGagaagtactttgtgctcttc	6	14	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	3294475	3294475	G	A	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.1724	p.S575L	0.784	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	94	0	0	97	47	32.64	-	-	-	A	3294475	G	A	3294475	3	1	490	1	0	0	0	0	1	0	0	0	9530	1294	45	2	637	2	MEFV	16	3294475	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1476173	3294475	87060278	561	45236										
MEFV	0	genome.wustl.edu	37	chr16	3294548	3294548	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatcttttgttttatctcttGaggagtggtccacttttcag	9	7	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	3294548	3294548	G	A	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	nonsense	c.1651	p.Q551*	0.001	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	72	0	0	70	38	35.19	-	-	-	A	3294548	G	A	3294548	4	1	490	1	0	0	0	0	0	1	0	0	9530	1299	45	2	710	2	MEFV	16	3294548	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	73	3294548	87060205	562	45237										
MEFV	0	genome.wustl.edu	37	chr16	3299509	3299509	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcagactgcagatgaggcaGatgggctcatcgtgatcctc	12	11	2	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	3299509	3299509	G	T	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	silent	c.1182	p.I394	0.047	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	23	0	0	32	20	38.46	-	-	-	T	3299509	G	T	3299509	2	4	490	1	0	0	0	0	0	0	0	1	9530	932	33	2		2	MEFV	16	3299509	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4961	3299509	87055244	563	45238										
CORO7	0	genome.wustl.edu	37	chr16	4390379	4390379	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcctggattttgagttcctCatccaggcgctcctttgcgc	11	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	4390379	4390379	C	A	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	nonsense	c.3088	p.E1030*	0.992	pfam_Protein_transpt	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	68	0	0	90	23	20.35	-	-	-	A	4390379	C	A	4390379	4	1	490	1	0	0	0	0	0	1	0	0	3789	835	29	2		2	CORO7	16	4390379	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1090870	4390379	85964374	564	45239										
GLYR1	0	genome.wustl.edu	37	chr16	4882060	4882060	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggggatttggagcctctctCtgaagagcctgaagacaccc	12	11	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	4882060	4882060	C	T	SNP	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	missense	c.457	p.E153K	1.000	NULL	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	61	0	0	52	21	28.77	-	-	-	T	4882060	C	T	4882060	3	4	490	1	0	0	0	0	1	0	0	0	6535	922	32	2	1252	2	GLYR1	16	4882060	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	491681	4882060	85472693	565	45240										
PPL	0	genome.wustl.edu	37	chr16	4934664	4934664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggcgatctgctcttcctggGaagctctttccctctccaga	10	14	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	4934664	4934664	G	A	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	missense	c.3992	p.S1331F	0.065	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	51	0	0	43	26	37.68	-	-	-	A	4934664	G	A	4934664	3	1	490	1	0	0	0	0	1	0	0	0	12411	1174	41	2	1282	2	PPL	16	4934664	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	52604	4934664	85420089	566	45241										
MKL2	0	genome.wustl.edu	37	chr16	14345861	14345861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcttccatccctgcaaaatgGacctaacacacccaacaagg	6	15	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	14345861	14345861	G	A	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.2513	p.G838E	0.989	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	37	0	0	30	11	26.83	-	-	-	A	14345861	G	A	14345861	3	1	490	1	0	0	0	0	1	0	0	0	9673	1174	41	2	2442	2	MKL2	16	14345861	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9411197	14345861	76008892	567	45242										
BFAR	0	genome.wustl.edu	37	chr16	14761577	14761577	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgttctggcccctcatccctCagtttgtttgcaactgtttg	8	12	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	14761577	14761577	C	T	SNP	BFAR	ENST00000261658	human	ensembl	69_37n	1	known	nonsense	c.1246	p.Q416*	1.000	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429	73	0	0	82	16	16.33	-	-	-	T	14761577	C	T	14761577	4	4	490	1	0	0	0	0	0	1	0	0	1419	827	29	2	1272	2	BFAR	16	14761577	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	415716	14761577	75593176	568	45243										
MPV17L	0	genome.wustl.edu	37	chr16	15494712	15494712	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaaattctggaatacctatCtggtaagataggcgtttgaa	10	5	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	15494712	15494712	C	T	SNP	MPV17L	ENST00000396385	human	ensembl	69_37n	1	known	silent	c.379	p.L127	0.997	pfam_Mpv17_PMP22	pfam_Mpv17_PMP22	-	no_errors	MPV17L	HGNC	ENSG00000156968	56	0	0	46	10	17.86	-	-	-	T	15494712	C	T	15494712	2	4	490	1	0	0	0	0	0	0	0	1	9818	912	32	2		2	MPV17L	16	15494712	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	733135	15494712	74860041	569	45244										
SYT17	0	genome.wustl.edu	37	chr16	19194943	19194943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gaaggagcccatccaaccttCggtgctcagacggacctata	10	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	19194943	19194943	C	T	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	missense	c.425	p.S142L	0.968	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	45	0	0	47	12	20.34	-	-	-	T	19194943	C	T	19194943	3	4	490	1	0	0	0	0	1	0	0	0	15565	893	31	1	443	1	SYT17	16	19194943	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3700231	19194943	71159810	570	45245										
ALDOA	0	genome.wustl.edu	37	chr16	30077131	30077131	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taaatcggctgcgttcctctCggaacgcgccgcagaagggg	14	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	30077131	30077131	C	T	SNP	ALDOA	ENST00000566012	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.791	-	-	-	no_errors	ALDOA	HGNC	ENSG00000149925	50	0	0	33	17	34	-	-	-	T	30077131	C	T	30077131	1	4	490	0	1	0	0	0	0	0	0	0	507	899	31	1		1	ALDOA	16	30077131	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	10882188	30077131	60277622	571	45246										
ZNF48	0	genome.wustl.edu	37	chr16	30410298	30410298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccatacaagtgtgcagagtGtggcaagggttttggtgaca	15	6	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	30410298	30410298	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	missense	c.1727	p.C576Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	38	0	0	43	5	10.42	-	-	-	A	30410298	G	A	30410298	3	1	490	1	0	0	0	0	1	0	0	0	18030	1377	48	4	1733	4	ZNF48	16	30410298	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	333167	30410298	59944455	572	45247										
PRR14	0	genome.wustl.edu	37	chr16	30663158	30663158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgccgccagcctctgactcGagcattatggggagccagga	14	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	30663158	30663158	G	A	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	missense	c.65	p.R22Q	0.506	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	89	0	0	88	34	27.64	-	-	-	A	30663158	G	A	30663158	3	1	490	1	0	0	0	0	1	0	0	0	12667	1058	37	1	71	1	PRR14	16	30663158	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	252860	30663158	59691595	573	45248										
PHKB	0	genome.wustl.edu	37	chr16	47730305	47730305	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttcagcaaccaaccctgtCagatatgaccatgtatgaga	7	10	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	47730305	47730305	C	T	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	1	known	missense	c.2909	p.S970L	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	63	0	0	41	22	34.92	-	-	-	T	47730305	C	T	47730305	3	4	490	1	0	0	0	0	1	0	0	0	11919	838	29	2	3177	2	PHKB	16	47730305	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	17067147	47730305	42624448	574	45249										
CHD9	0	genome.wustl.edu	37	chr16	53261490	53261490	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagtgatgattgatacagaaGaattttttgtaaaatacaag	9	2	0	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	53261490	53261490	G	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.2143	p.E715Q	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	54	0	0	41	17	29.31	-	-	-	C	53261490	G	C	53261490	3	2	490	1	0	0	0	0	1	0	0	0	3361	943	33	2	2165	2	CHD9	16	53261490	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5531185	53261490	37093263	575	45250										
NLRC5	0	genome.wustl.edu	37	chr16	57095611	57095611	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccgcagggctgttcagcctCaggtacctcctcccccgctg	10	19	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	57095611	57095611	C	G	SNP	NLRC5	ENST00000540182	human	ensembl	69_37n	1	known	nonsense	c.1157	p.S386*	0.999	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	43	0	0	37	10	21.28	-	-	-	G	57095611	C	G	57095611	4	3	490	1	0	0	0	0	0	1	0	0	10542	813	29	2	4270	2	NLRC5	16	57095611	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3834121	57095611	33259142	576	45251										
RRAD	0	genome.wustl.edu	37	chr16	66958816	66958816	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcagcaccttgtaaacgctCtcgtctgagtcgctgccccc	9	16	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	66958816	66958816	C	G	SNP	RRAD	ENST00000299759	human	ensembl	69_37n	-1	known	missense	c.267	p.E89D	0.484	smart_Small_GTPase_Ras,pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAD	HGNC	ENSG00000166592	12	0	0	12	15	55.56	-	-	-	G	66958816	C	G	66958816	3	3	490	1	0	0	0	0	1	0	0	0	13757	912	32	2	675	2	RRAD	16	66958816	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9863205	66958816	23395937	577	45252										
SLC9A5	0	genome.wustl.edu	37	chr16	67298294	67298294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccacttcatctcagaggatGcgcaggagcggcaggacaag	14	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	67298294	67298294	G	A	SNP	SLC9A5	ENST00000299798	human	ensembl	69_37n	1	known	missense	c.1882	p.A628T	0.653	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A5	HGNC	ENSG00000135740	44	0	0	40	22	34.92	-	-	-	A	67298294	G	A	67298294	3	1	490	1	0	0	0	0	1	0	0	0	14806	1319	46	4	1932	4	SLC9A5	16	67298294	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	339478	67298294	23056459	578	45253										
RANBP10	0	genome.wustl.edu	37	chr16	67839359	67839359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcctttgctgacaatcttcaCttcaaagtaataaatgccac	4	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	67839359	67839359	C	T	SNP	RANBP10	ENST00000317506	human	ensembl	69_37n	-1	known	missense	c.319	p.V107M	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084	50	0	0	42	7	14.29	-	-	-	T	67839359	C	T	67839359	3	4	490	1	0	0	0	0	1	0	0	0	13109	565	20	4	1595	4	RANBP10	16	67839359	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	541065	67839359	22515394	579	45254										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67865146	67865146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agccagggaagtatctcgcaGatcccgcaaaaaggcaccca	10	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	67865146	67865146	G	A	SNP	TSNAXIP1	ENST00000565558	human	ensembl	69_37n	1	known	missense	c.295	p.D99N	0.950	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSNAXIP1	HGNC	ENSG00000102904	34	0	0	31	5	13.89	-	-	-	A	67865146	G	A	67865146	3	1	490	1	0	0	0	0	1	0	0	0	16728	933	33	2		2	TSNAXIP1	16	67865146	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25787	67865146	22489607	580	45255										
CMIP	0	genome.wustl.edu	37	chr16	81679139	81679139	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggctctgctttccctggcctGagaaccctggcatatgtgct	11	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	81679139	81679139	G	A	SNP	CMIP	ENST00000564666	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CMIP	HGNC	ENSG00000153815	20	0	0	17	11	39.29	-	-	-	A	81679139	G	A	81679139	1	1	490	0	1	0	0	0	0	0	0	0	3608	1305	45	2		2	CMIP	16	81679139	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	13813993	81679139	8675614	581	45256										
IRF8	0	genome.wustl.edu	37	chr16	85936785	85936785	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taatcaggaagtggatgcctCcatttttaaggtaaagagcc	10	7	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	85936785	85936785	C	A	SNP	IRF8	ENST00000268638	human	ensembl	69_37n	1	known	missense	c.164	p.S55Y	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	31	0	0	21	12	36.36	-	-	-	A	85936785	C	A	85936785	3	1	490	1	0	0	0	0	1	0	0	0	7890	855	30	2	166	2	IRF8	16	85936785	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4257646	85936785	4417968	582	45257										
SPG7	0	genome.wustl.edu	37	chr16	89614411	89614411	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtggctgtttgtgttgacagGggctgacatcgccaacatct	13	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	16	89614411	89614411	G	T	SNP	SPG7	ENST00000268704	human	ensembl	69_37n	1	known	missense	c.1553	p.G518V	1.000	tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912	30	0	0	23	16	41.03	-	-	-	T	89614411	G	T	89614411	3	4	490	1	0	0	0	0	1	0	0	0	15135	1246	43	4	1749	4	SPG7	16	89614411	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3677626	89614411	740342	583	45258										
PELP1	0	genome.wustl.edu	37	chr17	4576547	4576547	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggcccatcacagttacctCaaggctatcttctcgctggc	8	14	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	4576547	4576547	C	G	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.2275	p.E759Q	0.994	pfam_Uncharacterised_NUC202	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	33	0	0	23	12	34.29	-	-	-	G	4576547	C	G	4576547	3	3	490	1	0	0	0	0	1	0	0	0	11798	835	29	2	1561	2	PELP1	17	4576547	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		4576547	76618663	584	45259										
USP6	0	genome.wustl.edu	37	chr17	5039177	5039177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgcctgaggaggacgcattCtgggcactggtgcagctgct	15	11	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	5039177	5039177	C	G	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	missense	c.618	p.F206L	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	106	0	0	82	13	13.68	-	-	-	G	5039177	C	G	5039177	3	3	490	1	0	0	0	0	1	0	0	0	17183	912	32	2	648	2	USP6	17	5039177	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	462630	5039177	76156033	585	45260										
MAP2K4	0	genome.wustl.edu	37	chr17	11958295	11958295	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atcccaatcctacaggagttCaaaacccacacatgtgagta	6	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	11958295	11958295	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	nonsense	c.238	p.Q80*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	22	0	0	9	6	40	-	-	-	T	11958295	C	T	11958295	4	4	490	1	0	0	0	0	0	1	0	0	9310	827	29	2	211	2	MAP2K4	17	11958295	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6919118	11958295	69236915	586	45261										
NCOR1	0	genome.wustl.edu	37	chr17	15965063	15965063	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcttctaacctggcagcttCatgcttactctcttttgttt	5	11	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	15965063	15965063	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5533	p.E1845K	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	35	0	0	23	4	14.81	-	-	-	T	15965063	C	T	15965063	3	4	490	1	0	0	0	0	1	0	0	0	10307	835	29	2	1829	2	NCOR1	17	15965063	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4006768	15965063	65230147	587	45262										
ERAL1	0	genome.wustl.edu	37	chr17	27187544	27187544	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcctctgcgatgttgacatCcgcctctctgtgaagctcct	8	14	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	27187544	27187544	C	T	SNP	ERAL1	ENST00000254928	human	ensembl	69_37n	1	known	silent	c.1287	p.I429	0.730	superfamily_KH_prok-type	pfam_GTP_binding_domain,pfam_MIRO-like,pfam_Dynamin_GTPase,pfam_AIG1,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,superfamily_KH_prok-type,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	ERAL1	HGNC	ENSG00000132591	53	0	0	50	7	12.28	-	-	-	T	27187544	C	T	27187544	2	4	490	1	0	0	0	0	0	0	0	1	5239	845	30	2		2	ERAL1	17	27187544	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11222481	27187544	54007666	588	45263										
PHF12	0	genome.wustl.edu	37	chr17	27239657	27239657	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cctatctgtgattggacagtCtttctttgcaaagtgctggt	10	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	27239657	27239657	C	T	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	silent	c.1932	p.K644	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	68	0	0	59	12	16.67	-	-	-	T	27239657	C	T	27239657	2	4	490	1	0	0	0	0	0	0	0	1	11897	912	32	2		2	PHF12	17	27239657	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	52113	27239657	53955553	589	45264										
CPD	0	genome.wustl.edu	37	chr17	28791716	28791716	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggctcaggcagcatcatgatGagtatgaagatgaaattcgc	12	7	2	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	28791716	28791716	G	A	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	missense	c.4027	p.E1343K	0.999	NULL	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	25	0	0	10	4	28.57	-	-	-	A	28791716	G	A	28791716	3	1	490	1	0	0	0	0	1	0	0	0	3828	1291	45	2	4109	2	CPD	17	28791716	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1552059	28791716	52403494	590	45265										
CCL15	0	genome.wustl.edu	37	chr17	34324830	34324830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagtagggcttcagctttttCatgcaatcctgaactcccgg	10	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	34324830	34324830	C	T	SNP	CCL15	ENST00000354059	human	ensembl	69_37n	-1	known	missense	c.315	p.M105I	0.035	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL15	Clone_based_vega_gene	ENSG00000267596	46	0	0	36	11	23.4	-	-	-	T	34324830	C	T	34324830	3	4	490	1	0	0	0	0	1	0	0	0	2913	826	29	2	30	2	CCL15	17	34324830	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5533114	34324830	46870380	591	45266										
ACACA	0	genome.wustl.edu	37	chr17	35444078	35444078	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggtgggctggagggggattCtgtgatcttacatcccagga	16	7	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	35444078	35444078	C	T	SNP	ACACA	ENST00000586821	human	ensembl	69_37n	-1	putative	missense	c.200	p.R67K	0.287	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACACA	HGNC	ENSG00000132142	58	0	0	46	10	17.86	-	-	-	T	35444078	C	T	35444078	3	4	490	1	0	0	0	0	1	0	0	0	106	928	32	2		2	ACACA	17	35444078	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1119248	35444078	45751132	592	45267										
COASY	0	genome.wustl.edu	37	chr17	40714751	40714751	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggctggtgaatcacacactCtatgttcacctgcagccggg	11	13	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	40714751	40714751	C	T	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	silent	c.198	p.L66	0.915	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	75	0	0	60	24	28.57	-	-	-	T	40714751	C	T	40714751	2	4	490	1	0	0	0	0	0	0	0	1	3682	900	32	2		2	COASY	17	40714751	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5270673	40714751	40480459	593	45268										
PLEKHH3	0	genome.wustl.edu	37	chr17	40826403	40826403	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggcccgctcctcactggctGagtcagcgtcacttccaggg	12	15	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	40826403	40826403	G	A	SNP	PLEKHH3	ENST00000591022	human	ensembl	69_37n	-1	known	nonsense	c.187	p.Q63*	0.997	NULL	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137	63	0	0	53	12	18.46	-	-	-	A	40826403	G	A	40826403	4	1	490	1	0	0	0	0	0	1	0	0	12152	1299	45	2	2242	2	PLEKHH3	17	40826403	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	111652	40826403	40368807	594	45269										
HDAC5	0	genome.wustl.edu	37	chr17	42170727	42170727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggatgagcagctgctgctCcagccgctgcttctccagct	11	15	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	42170727	42170727	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	missense	c.484	p.E162K	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	79	0	0	79	17	17.71	-	-	-	T	42170727	C	T	42170727	3	4	490	1	0	0	0	0	1	0	0	0	7061	864	30	2	2979	2	HDAC5	17	42170727	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1344324	42170727	39024483	595	45270										
HDAC5	0	genome.wustl.edu	37	chr17	42170740	42170740	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgctgctccagccgctgcttCtccagctcttcctgccgctg	9	18	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	42170740	42170740	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	silent	c.471	p.E157	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	80	0	0	91	16	14.95	-	-	-	T	42170740	C	T	42170740	2	4	490	1	0	0	0	0	0	0	0	1	7061	912	32	2		2	HDAC5	17	42170740	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	13	42170740	39024470	596	45271										
TTLL6	0	genome.wustl.edu	37	chr17	46863571	46863571	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgtctttctgctgttgtttCtgttgccagcccctcatgcc	8	13	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	46863571	46863571	C	A	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	missense	c.1716	p.Q572H	0.001	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	156	0	0	169	26	13.33	-	-	-	A	46863571	C	A	46863571	3	1	490	1	0	0	0	0	1	0	0	0	16828	912	32	2	975	2	TTLL6	17	46863571	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4692831	46863571	34331639	597	45272										
DLX4	0	genome.wustl.edu	37	chr17	48050219	48050219	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtgggagctccctgggagcaGaactgcgtcttgtatcacct	13	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	48050219	48050219	G	C	SNP	DLX4	ENST00000503410	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLX4	HGNC	ENSG00000108813	15	0	0	13	5	27.78	-	-	-	C	48050219	G	C	48050219	1	2	490	0	1	0	0	0	0	0	0	0	4609	957	33	2		2	DLX4	17	48050219	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1186648	48050219	33144991	598	45273										
LUC7L3	0	genome.wustl.edu	37	chr17	48828520	48828520	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aactgctagtatttctttgtCaaggatgtttctagtttttt	7	5	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	48828520	48828520	C	T	SNP	LUC7L3	ENST00000503798	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	LUC7L3	HGNC	ENSG00000108848	75	0	0	82	18	18	-	-	-	T	48828520	C	T	48828520	1	4	490	0	1	0	0	0	0	0	0	0	9150	841	29	2		2	LUC7L3	17	48828520	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	778301	48828520	32366690	599	45274										
INTS2	0	genome.wustl.edu	37	chr17	59984890	59984890	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctccatatccacatcagcttCttccacaattcgggtgcttc	5	15	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	59984890	59984890	C	T	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	missense	c.1084	p.E362K	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	69	0	0	64	9	12.33	-	-	-	T	59984890	C	T	59984890	3	4	490	1	0	0	0	0	1	0	0	0	7832	922	32	2	2602	2	INTS2	17	59984890	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11156370	59984890	21210320	600	45275										
INTS2	0	genome.wustl.edu	37	chr17	59984941	59984941	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagaatgcccatcaactccaGaagaagctgccttctcatct	6	13	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	59984941	59984941	G	A	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	silent	c.1033	p.L345	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	53	0	0	45	15	25	-	-	-	A	59984941	G	A	59984941	2	1	490	1	0	0	0	0	0	0	0	1	7832	933	33	2		2	INTS2	17	59984941	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	51	59984941	21210269	601	45276										
TANC2	0	genome.wustl.edu	37	chr17	61497523	61497523	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcagcagcagttgccggaaGaagcagaacctgagccacag	12	12	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	61497523	61497523	G	A	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.4180	p.E1394K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	36	0	0	40	8	16.67	-	-	-	A	61497523	G	A	61497523	3	1	490	1	0	0	0	0	1	0	0	0	15637	943	33	2	4278	2	TANC2	17	61497523	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1512582	61497523	19697687	602	45277										
LRRC37A3	0	genome.wustl.edu	37	chr17	62856114	62856114	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcttttgtattattgttttCtataaaatgttctgaaggag	8	3	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	62856114	62856114	C	G	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.4150	p.E1384Q	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	81	0	0	88	16	15.24	-	-	-	G	62856114	C	G	62856114	3	3	490	1	0	0	0	0	1	0	0	0	9059	922	32	2	770	2	LRRC37A3	17	62856114	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1358591	62856114	18339096	603	45278										
COG1	0	genome.wustl.edu	37	chr17	71197491	71197491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcctctccatgaaagcacaaGccatcagcccttgtgtacag	8	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	71197491	71197491	G	C	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.1525	p.A509P	0.998	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	55	0	0	33	4	10.81	-	-	-	C	71197491	G	C	71197491	3	2	490	1	0	0	0	0	1	0	0	0	3687	971	34	4	1551	4	COG1	17	71197491	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	8341377	71197491	9997719	604	45279										
TTYH2	0	genome.wustl.edu	37	chr17	72227061	72227061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggtttctatggaaacagcGagaccaacgatggggcgtac	13	8	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	72227061	72227061	G	A	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	missense	c.337	p.E113K	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	43	0	0	26	13	33.33	-	-	-	A	72227061	G	A	72227061	3	1	490	1	0	0	0	0	1	0	0	0	16837	1059	37	1	347	1	TTYH2	17	72227061	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1029570	72227061	8968149	605	45280										
KIF19	0	genome.wustl.edu	37	chr17	72349061	72349061	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctgatgcccagcacctgcaGaacagcgccctccctcccct	7	20	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	72349061	72349061	G	A	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	silent	c.2082	p.Q694	0.001	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	21	0	0	12	4	25	-	-	-	A	72349061	G	A	72349061	2	1	490	1	0	0	0	0	0	0	0	1	8334	933	33	2		2	KIF19	17	72349061	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	122000	72349061	8846149	606	45281										
C17orf28	0	genome.wustl.edu	37	chr17	72960609	72960609	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggtggccaagttggagggtGactcttcccgcacggcccgg	17	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	72960609	72960609	G	A	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	missense	c.185	p.S62L	1.000	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	38	0	0	37	17	31.48	-	-	-	A	72960609	G	A	72960609	3	1	490	1	0	0	0	0	1	0	0	0	1868	1294	45	2	2253	2	C17orf28	17	72960609	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	611548	72960609	8234601	607	45282										
TNRC6C	0	genome.wustl.edu	37	chr17	76047316	76047316	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcgccgcaaaatggaaattGatgatggtacctcagcttgg	11	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	76047316	76047316	G	C	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.2173	p.D725H	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	41	0	0	29	13	30.95	-	-	-	C	76047316	G	C	76047316	3	2	490	1	0	0	0	0	1	0	0	0	16437	1290	45	2	2175	2	TNRC6C	17	76047316	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3086707	76047316	5147894	608	45283										
DNAH17	0	genome.wustl.edu	37	chr17	76523036	76523036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgccacggtcagcttcacctGaatggccagtttcttggtat	10	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	76523036	76523036	G	C	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.3550	p.Q1184E	0.606	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	39	0	0	32	8	20	-	-	-	C	76523036	G	C	76523036	3	2	490	1	0	0	0	0	1	0	0	0	4637	1299	45	2	10074	2	DNAH17	17	76523036	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	475720	76523036	4672174	609	45284										
RNF213	0	genome.wustl.edu	37	chr17	78320002	78320002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagaagtcctctgcgcctctCagggtttcatgaggaaaaca	10	11	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	78320002	78320002	C	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.7867	p.Q2623E	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	37	0	0	42	5	10.64	-	-	-	G	78320002	C	G	78320002	3	3	490	1	0	0	0	0	1	0	0	0	13563	827	29	2	8296	2	RNF213	17	78320002	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1796966	78320002	2875208	610	45285										
AATK	0	genome.wustl.edu	37	chr17	79139785	79139785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agctggggttgaagaaggacGacgacatggccgggccagcg	18	9	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	79139785	79139785	G	A	SNP	AATK	ENST00000326724	human	ensembl	69_37n	-1	known	missense	c.8	p.S3L	0.996	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409	34	0	0	22	11	33.33	-	-	-	A	79139785	G	A	79139785	3	1	490	1	0	0	0	0	1	0	0	0	26	1059	37	1	4172	1	AATK	17	79139785	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	819783	79139785	2055425	611	45286										
SIRT7	0	genome.wustl.edu	37	chr17	79875438	79875438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttaaaggcgagtttttcgcGattactggagctcatactcc	9	9	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	17	79875438	79875438	G	A	SNP	SIRT7	ENST00000576004	human	ensembl	69_37n	-1	putative	missense	c.16	p.R6C	0.000	NULL	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT7	HGNC	ENSG00000187531	43	0	0	56	28	33.33	-	-	-	A	79875438	G	A	79875438	3	1	490	1	0	0	0	0	1	0	0	0	14432	1073	37	1		1	SIRT7	17	79875438	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	735653	79875438	1319772	612	45287										
CTAGE1	0	genome.wustl.edu	37	chr18	19997759	19997759	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccatggaaaaccataaggatGagaatcgggtctcatacctt	9	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	19997759	19997759	G	A	SNP	CTAGE1	ENST00000391403	human	ensembl	69_37n	-1	known	missense	c.16	p.H6Y	0.000	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710	46	0	0	48	12	20	-	-	-	A	19997759	G	A	19997759	3	1	490	1	0	0	0	0	1	0	0	0	4024	1290	45	2	2225	2	CTAGE1	18	19997759	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		19997759	58079489	613	45288										
ZNF521	0	genome.wustl.edu	37	chr18	22806869	22806869	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagggctgttgctgtgattgCatgactccggttgctggtga	15	7	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	22806869	22806869	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	missense	c.1013	p.C338Y	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	48	0	0	56	9	13.85	-	-	-	T	22806869	C	T	22806869	3	4	490	1	0	0	0	0	1	0	0	0	18061	710	25	4	2942	4	ZNF521	18	22806869	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2809110	22806869	55270379	614	45289										
C18orf25	0	genome.wustl.edu	37	chr18	43820137	43820137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accagcgggcttctagaggaGctgaatgcagaggcaggttg	16	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	43820137	43820137	G	A	SNP	C18orf25	ENST00000282059	human	ensembl	69_37n	1	putative	silent	c.882	p.E294	1.000	NULL	NULL	-	no_errors	C18orf25	HGNC	ENSG00000152242	78	0	0	85	12	12.37	-	-	-	A	43820137	G	A	43820137	2	1	490	1	0	0	0	0	0	0	0	1	1916	962	34	4		4	C18orf25	18	43820137	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	21013268	43820137	34257111	615	45290										
ATP8B1	0	genome.wustl.edu	37	chr18	55398952	55398952	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctggtcatcaagttcatcttCtgtttcatcatcactgtagg	7	10	8	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	55398952	55398952	C	T	SNP	ATP8B1	ENST00000283684	human	ensembl	69_37n	-1	known	missense	c.88	p.E30K	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B1	HGNC	ENSG00000081923	116	1	0.85	102	34	25	-	-	-	T	55398952	C	T	55398952	3	4	490	1	0	0	0	0	1	0	0	0	1198	922	32	2	3775	2	ATP8B1	18	55398952	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	11578815	55398952	22678296	616	45291										
SERPINB10	0	genome.wustl.edu	37	chr18	61585256	61585256	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atttccaaacacttatctcaGaaatcctcaagcccaacgat	3	13	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	61585256	61585256	G	C	SNP	SERPINB10	ENST00000238508	human	ensembl	69_37n	1	known	missense	c.292	p.E98Q	0.999	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550	49	0	0	39	6	13.33	-	-	-	C	61585256	G	C	61585256	3	2	490	1	0	0	0	0	1	0	0	0	14185	943	33	2	302	2	SERPINB10	18	61585256	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6186304	61585256	16491992	617	45292										
SERPINB10	0	genome.wustl.edu	37	chr18	61602231	61602231	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggatgagtgatgccttcagcCaaagcaaagctgatttctca	10	9	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	61602231	61602231	C	T	SNP	SERPINB10	ENST00000238508	human	ensembl	69_37n	1	known	nonsense	c.949	p.Q317*	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550	50	0	0	41	15	26.79	-	-	-	T	61602231	C	T	61602231	4	4	490	1	0	0	0	0	0	1	0	0	14185	595	21	4	975	4	SERPINB10	18	61602231	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	16975	61602231	16475017	618	45293										
ZNF407	0	genome.wustl.edu	37	chr18	72343220	72343220	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caggaaattagatgaggcagAgccccttaaatctggaaagc	11	8	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	18	72343220	72343220	A	T	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.245	p.E82V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	25	0	0	31	4	11.43	-	-	-	T	72343220	A	T	72343220	3	4	490	1	0	0	0	0	1	0	0	0	17983	304	11	5	247	5	ZNF407	18	72343220	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	10740989	72343220	5734028	619	45294										
LMNB2	0	genome.wustl.edu	37	chr19	2434442	2434442	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgctccttggcgtccagcatCttccggaacttgtcccgctc	9	16	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	2434442	2434442	C	G	SNP	LMNB2	ENST00000325327	human	ensembl	69_37n	-1	known	missense	c.1053	p.K351N	0.085	pfam_F	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	44	0	0	42	11	20.75	-	-	-	G	2434442	C	G	2434442	3	3	490	1	0	0	0	0	1	0	0	0	8906	912	32	2	833	2	LMNB2	19	2434442	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		2434442	56694541	620	45295										
TMIGD2	0	genome.wustl.edu	37	chr19	4292732	4292732	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcgggctggggcagggtcttGacgccaggtgcggctggcgg	21	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	4292732	4292732	G	C	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	nonsense	c.713	p.S238*	0.006	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	50	0	0	41	10	19.61	-	-	-	C	4292732	G	C	4292732	4	2	490	1	0	0	0	0	0	1	0	0	16326	1294	45	2	139	2	TMIGD2	19	4292732	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1858290	4292732	54836251	621	45296										
KDM4B	0	genome.wustl.edu	37	chr19	5077436	5077436	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgcggcataagatgaccctCatctcgcccatcatcctgaa	7	15	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	5077436	5077436	C	T	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	silent	c.735	p.L245	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	50	0	0	63	18	22.22	-	-	-	T	5077436	C	T	5077436	2	4	490	1	0	0	0	0	0	0	0	1	8183	813	29	2		2	KDM4B	19	5077436	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	784704	5077436	54051547	622	45297										
KDM4B	0	genome.wustl.edu	37	chr19	5131263	5131263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccaggccctgcagccatgGaggagagccccctgccggca	14	17	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	5131263	5131263	G	A	SNP	KDM4B	ENST00000588361	human	ensembl	69_37n	1	putative	nonsense	c.729	p.W243*	0.788	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KDM4B	HGNC	ENSG00000127663	21	0	0	17	4	19.05	-	-	-	A	5131263	G	A	5131263	4	1	490	1	0	0	0	0	0	1	0	0	8183	1175	41	2	1530	2	KDM4B	19	5131263	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	53827	5131263	53997720	623	45298										
INSR	0	genome.wustl.edu	37	chr19	7172440	7172440	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcttctagctcagctgccaGattgtctaaggaaaggagag	13	8	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	7172440	7172440	G	C	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.1129	p.L377V	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	43	0	0	34	13	27.66	-	-	-	C	7172440	G	C	7172440	3	2	490	1	0	0	0	0	1	0	0	0	7827	933	33	2	3091	2	INSR	19	7172440	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2041177	7172440	51956543	624	45299										
XAB2	0	genome.wustl.edu	37	chr19	7692692	7692692	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcggtcacacagcgatgcttCacctgtgcccgacgcgcctt	10	16	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	7692692	7692692	C	T	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	silent	c.246	p.V82	1.000	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	41	0	0	32	14	29.79	-	-	-	T	7692692	C	T	7692692	2	4	490	1	0	0	0	0	0	0	0	1	17515	813	29	2		2	XAB2	19	7692692	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	520252	7692692	51436291	625	45300										
FCER2	0	genome.wustl.edu	37	chr19	7755420	7755420	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggaaattgatccacttttCagggcacgtgttgcacacaa	9	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	7755420	7755420	C	G	SNP	FCER2	ENST00000346664	human	ensembl	69_37n	-1	known	missense	c.493	p.E165Q	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	FCER2	HGNC	ENSG00000104921	49	0	0	71	14	16.28	-	-	-	G	7755420	C	G	7755420	3	3	490	1	0	0	0	0	1	0	0	0	5822	835	29	2	484	2	FCER2	19	7755420	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	62728	7755420	51373563	626	45301										
ZNF414	0	genome.wustl.edu	37	chr19	8575609	8575609	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acactggaagctccccctctGacagcagcggcgacaccttg	10	16	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	8575609	8575609	G	A	SNP	ZNF414	ENST00000393927	human	ensembl	69_37n	-1	known	missense	c.1139	p.S380L	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF414	HGNC	ENSG00000133250	42	0	0	48	10	17.24	-	-	-	A	8575609	G	A	8575609	3	1	490	1	0	0	0	0	1	0	0	0	17987	1294	45	2	37	2	ZNF414	19	8575609	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	820189	8575609	50553374	627	45302										
ZNF177	0	genome.wustl.edu	37	chr19	9491524	9491524	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgtgagcattcacattggaGagaaaactcttgaatttact	8	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	9491524	9491524	G	C	SNP	ZNF177	ENST00000434737	human	ensembl	69_37n	1	known	missense	c.517	p.E173Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629	41	0	0	45	5	10	-	-	-	C	9491524	G	C	9491524	3	2	490	1	0	0	0	0	1	0	0	0	17842	943	33	2	535	2	ZNF177	19	9491524	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	915915	9491524	49637459	628	45303										
TSPAN16	0	genome.wustl.edu	37	chr19	11422853	11422853	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctaaaaatcaccaagactcaGagcttcaccctgagtgggag	9	11	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	11422853	11422853	G	T	SNP	TSPAN16	ENST00000316737	human	ensembl	69_37n	1	known	missense	c.642	p.Q214H	0.985	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN16	HGNC	ENSG00000130167	70	0	0	64	10	13.51	-	-	-	T	11422853	G	T	11422853	3	4	490	1	0	0	0	0	1	0	0	0	16736	933	33	2	664	2	TSPAN16	19	11422853	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1931329	11422853	47706130	629	45304										
RAB3D	0	genome.wustl.edu	37	chr19	11446153	11446153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcgagcctccggccatcctCagcaggcacaacacgttcgt	11	16	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	11446153	11446153	C	T	SNP	RAB3D	ENST00000222120	human	ensembl	69_37n	-1	known	missense	c.442	p.E148K	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3D	HGNC	ENSG00000105514	40	0	0	67	8	10.67	-	-	-	T	11446153	C	T	11446153	3	4	490	1	0	0	0	0	1	0	0	0	13017	835	29	2	225	2	RAB3D	19	11446153	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	23300	11446153	47682830	630	45305										
ZNF443	0	genome.wustl.edu	37	chr19	12542336	12542336	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtttctctccagtgtgcgttCtttcatgcatatgtaataaa	7	8	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	12542336	12542336	C	G	SNP	ZNF443	ENST00000301547	human	ensembl	69_37n	-1	known	missense	c.650	p.R217T	0.527	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	82	0	0	88	16	15.24	-	-	-	G	12542336	C	G	12542336	3	3	490	1	0	0	0	0	1	0	0	0	18012	913	32	2	1369	2	ZNF443	19	12542336	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1096183	12542336	46586647	631	45306										
RAD23A	0	genome.wustl.edu	37	chr19	13059579	13059579	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gagcgggtcgtggccgccctGagagccagctacaacaaccc	13	15	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	13059579	13059579	G	C	SNP	RAD23A	ENST00000586375	human	ensembl	69_37n	1	known	nonstop	c.77	p.*26S	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RAD23A	HGNC	ENSG00000179262	26	0	0	39	5	11.36	-	-	-	C	13059579	G	C	13059579	4	2	490	1	0	0	0	0	0	0	0	0	13065	1277	45	2	570	2	RAD23A	19	13059579	Nonstop_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	517243	13059579	46069404	632	45307										
NANOS3	0	genome.wustl.edu	37	chr19	13991286	13991286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgccgggaagtctgagccttCgccctcctgctctccctcca	9	18	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	13991286	13991286	C	T	SNP	NANOS3	ENST00000339133	human	ensembl	69_37n	1	known	missense	c.548	p.S183L	0.018	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556	38	0	0	50	15	23.08	-	-	-	T	13991286	C	T	13991286	3	4	490	1	0	0	0	0	1	0	0	0	10225	893	31	1	554	1	NANOS3	19	13991286	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	931707	13991286	45137697	633	45308										
CYP4F8	0	genome.wustl.edu	37	chr19	15730300	15730300	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatggtcctcattcatgtcaGatgccattacagacaaggac	9	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	15730300	15730300	G	C	SNP	CYP4F8	ENST00000441682	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CYP4F8	HGNC	ENSG00000186526	67	0	0	70	19	20.88	-	-	-	C	15730300	G	C	15730300	5	2	490	1	0	0	0	0	0	0	1	0	4222	956	33	2	353	2	CYP4F8	19	15730300	Splice_Site	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1739014	15730300	43398683	634	45309										
OR10H4	0	genome.wustl.edu	37	chr19	16060034	16060034	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccctctccgtctctgagattCtgttcactgttgccatcacc	6	16	5	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	16060034	16060034	C	T	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	silent	c.217	p.L73	0.110	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	127	0	0	176	24	12	-	-	-	T	16060034	C	T	16060034	2	4	490	1	0	0	0	0	0	0	0	1	10981	912	32	2		2	OR10H4	19	16060034	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	329734	16060034	43068949	635	45310										
FAM32A	0	genome.wustl.edu	37	chr19	16301698	16301698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttctactccacctccccagGacttcaacagacacctggac	5	18	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	16301698	16301698	G	A	SNP	FAM32A	ENST00000263384	human	ensembl	69_37n	1	known	missense	c.271	p.D91N	1.000	NULL	pfam_DUF1754_euk	-	no_errors	FAM32A	HGNC	ENSG00000105058	30	0	0	37	7	15.91	-	-	-	A	16301698	G	A	16301698	3	1	490	1	0	0	0	0	1	0	0	0	5598	1188	41	2	285	2	FAM32A	19	16301698	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	241664	16301698	42827285	636	45311										
MYO9B	0	genome.wustl.edu	37	chr19	17212891	17212891	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggaaccatcaagtacgtgCatatgcagctggtggcgcag	13	9	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	17212891	17212891	C	G	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.364	p.H122D	0.383	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	36	0	0	41	14	25.45	-	-	-	G	17212891	C	G	17212891	3	3	490	1	0	0	0	0	1	0	0	0	10157	710	25	4	366	4	MYO9B	19	17212891	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	911193	17212891	41916092	637	45312										
FAM129C	0	genome.wustl.edu	37	chr19	17641688	17641688	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accggaagccagttgctacgCagcaaagtgggtgttgtggg	16	8	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	17641688	17641688	C	A	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	silent	c.273	p.R91	0.009	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	26	0	0	20	10	33.33	-	-	-	A	17641688	C	A	17641688	2	1	490	1	0	0	0	0	0	0	0	1	5478	697	25	4		4	FAM129C	19	17641688	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	428797	17641688	41487295	638	45313										
ZNF14	0	genome.wustl.edu	37	chr19	19822265	19822265	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataaggtttctctccagtgtGagacctttcatgaattcgaa	8	8	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	19822265	19822265	G	A	SNP	ZNF14	ENST00000344099	human	ensembl	69_37n	-1	known	missense	c.1825	p.H609Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	44	0	0	34	8	19.05	-	-	-	A	19822265	G	A	19822265	3	1	490	1	0	0	0	0	1	0	0	0	17824	1290	45	2	107	2	ZNF14	19	19822265	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2180577	19822265	39306718	639	45314										
ZNF430	0	genome.wustl.edu	37	chr19	21216270	21216270	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtgtttttcaggggccattGacatttagggatgtggccat	13	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	21216270	21216270	G	A	SNP	ZNF430	ENST00000261560	human	ensembl	69_37n	1	known	silent	c.105	p.L35	0.125	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620	103	0	0	82	27	24.77	-	-	-	A	21216270	G	A	21216270	2	1	490	1	0	0	0	0	0	0	0	1	18000	1281	45	2		2	ZNF430	19	21216270	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1394005	21216270	37912713	640	45315										
ANKRD27	0	genome.wustl.edu	37	chr19	33131255	33131255	+	Nonsense_Mutation	SNP	G	G	C													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caagcaagtataacaggactGatagcagatcatcagcacac							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	33131255	33131255	G	C	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	nonsense	c.941	p.S314*	0.932	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	29	0	0	37	8	17.78	-	-	-	C	33131255	G	C	33131255	4	2	490	1	0	0	0	0	0	1	0	0	655	1294	45	2	2287	2	ANKRD27	19	33131255	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	11914985	33131255	25997728	641	45316	372	2								
ANKRD27	0	genome.wustl.edu	37	chr19	33131262	33131262	+	Silent	SNP	G	G	A													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtataacaggactgatagcaGatcatcagcacacatggtct							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	33131262	33131262	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.934	p.L312	1.000	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	31	0	0	35	7	16.67	-	-	-	A	33131262	G	A	33131262	2	1	490	1	0	0	0	0	0	0	0	1	655	933	33	2		2	ANKRD27	19	33131262	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7	33131262	25997721	642	45317	372	2								
ARHGAP33	0	genome.wustl.edu	37	chr19	36268731	36268731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcccctgtctcccaggctctCagctcctcgaggccccttcc	7	21	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	36268731	36268731	C	T	SNP	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	missense	c.110	p.S37L	0.998	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	37	0	0	36	11	23.4	-	-	-	T	36268731	C	T	36268731	3	4	490	1	0	0	0	0	1	0	0	0	884	838	29	2	120	2	ARHGAP33	19	36268731	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3137469	36268731	22860252	643	45318										
ZNF790	0	genome.wustl.edu	37	chr19	37310934	37310934	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgtggtttttacaaattctCattatttccaattgggctat	6	7	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	37310934	37310934	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.312	p.M104I	0.028	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	57	0	0	53	6	10.17	-	-	-	T	37310934	C	T	37310934	3	4	490	1	0	0	0	0	1	0	0	0	18255	826	29	2	1602	2	ZNF790	19	37310934	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1042203	37310934	21818049	644	45319										
ZNF540	0	genome.wustl.edu	37	chr19	38102737	38102737	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaaaatagattctgatgtgAaacatgattgtaaagaatgt	10	2	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	38102737	38102737	A	G	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.556	p.K186E	0.432	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	22	0	0	23	10	30.3	-	-	-	G	38102737	A	G	38102737	3	3	490	1	0	0	0	0	1	0	0	0	18071	247	9	5	570	5	ZNF540	19	38102737	Missense_Mutation	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	791803	38102737	21026246	645	45320										
ZFP36	0	genome.wustl.edu	37	chr19	39898893	39898893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggcggccccgggccaccctCctgtgcttcgccagagcatc	12	18	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	39898893	39898893	C	T	SNP	ZFP36	ENST00000248673	human	ensembl	69_37n	1	known	missense	c.535	p.P179S	0.902	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016	69	0	0	95	11	10.38	-	-	-	T	39898893	C	T	39898893	3	4	490	1	0	0	0	0	1	0	0	0	17741	855	30	2	541	2	ZFP36	19	39898893	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1796156	39898893	19230090	646	45321										
FCGBP	0	genome.wustl.edu	37	chr19	40354354	40354354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtccccgtcaaagtttccaCaggccccacacagtttccca	7	17	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	40354354	40354354	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.16115	p.C5372Y	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	79	0	0	56	13	18.84	-	-	-	T	40354354	C	T	40354354	3	4	490	1	0	0	0	0	1	0	0	0	5824	478	17	4	110	4	FCGBP	19	40354354	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	455461	40354354	18774629	647	45322										
EXOSC5	0	genome.wustl.edu	37	chr19	41897847	41897847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgtgttcctgatcagccgctCccggctcttctctgcaacac	8	17	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	41897847	41897847	C	T	SNP	EXOSC5	ENST00000221233	human	ensembl	69_37n	-1	known	missense	c.283	p.E95K	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC5	HGNC	ENSG00000077348	42	0	0	45	6	11.76	-	-	-	T	41897847	C	T	41897847	3	4	490	1	0	0	0	0	1	0	0	0	5354	864	30	2	440	2	EXOSC5	19	41897847	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1543493	41897847	17231136	648	45323										
ARHGEF1	0	genome.wustl.edu	37	chr19	42392332	42392332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gggctgaggatgaggattttGagaacgagctggagacagtg	18	4	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	42392332	42392332	G	C	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	missense	c.139	p.E47Q	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	44	0	0	28	5	15.15	-	-	-	C	42392332	G	C	42392332	3	2	490	1	0	0	0	0	1	0	0	0	895	1291	45	2	149	2	ARHGEF1	19	42392332	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	494485	42392332	16736651	649	45324										
MEGF8	0	genome.wustl.edu	37	chr19	42848852	42848852	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgccgaggggagcagatctCaggcactgtgggctggtggg	19	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	42848852	42848852	C	G	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	nonsense	c.1964	p.S655*	1.000	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	57	0	0	57	17	22.97	-	-	-	G	42848852	C	G	42848852	4	3	490	1	0	0	0	0	0	1	0	0	9534	838	29	2	2010	2	MEGF8	19	42848852	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	456520	42848852	16280131	650	45325										
ZNF226	0	genome.wustl.edu	37	chr19	44680727	44680727	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gctcaaatctttacattcatCagagagtccacacaggagaa	7	10	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	44680727	44680727	C	T	SNP	ZNF226	ENST00000337433	human	ensembl	69_37n	1	known	nonsense	c.1312	p.Q438*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380	33	0	0	22	11	33.33	-	-	-	T	44680727	C	T	44680727	4	4	490	1	0	0	0	0	0	1	0	0	17876	827	29	2	1380	2	ZNF226	19	44680727	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1831875	44680727	14448256	651	45326										
ZFP112	0	genome.wustl.edu	37	chr19	44832181	44832181	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atatatatggtctttctccaGaatggacactctgatgactc	7	9	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	44832181	44832181	G	A	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	missense	c.2198	p.S733F	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	74	0	0	73	15	17.05	-	-	-	A	44832181	G	A	44832181	3	1	490	1	0	0	0	0	1	0	0	0	17734	942	33	2	598	2	ZFP112	19	44832181	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	151454	44832181	14296802	652	45327										
ZNF229	0	genome.wustl.edu	37	chr19	44934557	44934557	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tggggagcagcatcttctgaGaactggaagtcttttccttg	12	8	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	44934557	44934557	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	silent	c.399	p.F133	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	105	0	0	86	30	25.86	-	-	-	A	44934557	G	A	44934557	2	1	490	1	0	0	0	0	0	0	0	1	17878	933	33	2		2	ZNF229	19	44934557	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	102376	44934557	14194426	653	45328										
MARK4	0	genome.wustl.edu	37	chr19	45762346	45762346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actccatcgcctcctgtcccGaggagcagccccacgtgggc	11	18	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	45762346	45762346	G	A	SNP	MARK4	ENST00000262891	human	ensembl	69_37n	1	known	missense	c.151	p.E51K	0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK4	HGNC	ENSG00000007047	52	0	0	44	9	16.98	-	-	-	A	45762346	G	A	45762346	3	1	490	1	0	0	0	0	1	0	0	0	9386	1059	37	1	157	1	MARK4	19	45762346	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	827789	45762346	13366637	654	45329										
PPP5C	0	genome.wustl.edu	37	chr19	46878932	46878932	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcaacaagatcgtgaagcaGaaggcctttgagcgggccat	13	9	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	46878932	46878932	G	C	SNP	PPP5C	ENST00000012443	human	ensembl	69_37n	1	known	missense	c.435	p.Q145H	1.000	pfam_PPP_dom,pirsf_Ser/Thr_PPase_5	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485	43	0	0	40	6	13.04	-	-	-	C	46878932	G	C	46878932	3	2	490	1	0	0	0	0	1	0	0	0	12483	933	33	2	445	2	PPP5C	19	46878932	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1116586	46878932	12250051	655	45330										
EHD2	0	genome.wustl.edu	37	chr19	48244171	48244171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgcacgacttcaccaagtttCactcgctgaagccgaagctg	9	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	48244171	48244171	C	T	SNP	EHD2	ENST00000263277	human	ensembl	69_37n	1	known	missense	c.1114	p.H372Y	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	26	0	0	35	6	14.63	-	-	-	T	48244171	C	T	48244171	3	4	490	1	0	0	0	0	1	0	0	0	5013	826	29	2	1132	2	EHD2	19	48244171	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1365239	48244171	10884812	656	45331										
LIG1	0	genome.wustl.edu	37	chr19	48640981	48640981	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cgggtgggggtgtcgagggtGacagttgtggctgcgtgtct	21	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	48640981	48640981	G	A	SNP	LIG1	ENST00000542460	human	ensembl	69_37n	-1	known	missense	c.1027	p.H343Y	0.000	NULL	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	-	no_errors	LIG1	HGNC	ENSG00000105486	129	0	0	138	28	16.77	-	-	-	A	48640981	G	A	48640981	3	1	490	1	0	0	0	0	1	0	0	0	8836	1305	45	2		2	LIG1	19	48640981	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	396810	48640981	10488002	657	45332										
GRIN2D	0	genome.wustl.edu	37	chr19	48945552	48945552	+	Silent	SNP	C	C	G													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgggcctgtccctgctggtCttcgcctgggagcacctggt							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	48945552	48945552	C	G	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	silent	c.2586	p.V862	1.000	prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	29	0	0	51	11	17.74	-	-	-	G	48945552	C	G	48945552	2	3	490	1	0	0	0	0	0	0	0	1	6833	900	32	2		2	GRIN2D	19	48945552	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	304571	48945552	10183431	658	45333	373	2								
GRIN2D	0	genome.wustl.edu	37	chr19	48945555	48945555	+	Silent	SNP	C	C	T													0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggcctgtccctgctggtcttCgcctgggagcacctggtgta							TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	48945555	48945555	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	silent	c.2589	p.F863	1.000	prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	31	0	0	50	11	18.03	-	-	-	T	48945555	C	T	48945555	2	4	490	1	0	0	0	0	0	0	0	1	6833	883	31	1		1	GRIN2D	19	48945555	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3	48945555	10183428	659	45334	373	2								
BCAT2	0	genome.wustl.edu	37	chr19	49309945	49309945	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccaggcttcttatgaggcttCtgtgtcatttccagctgcag	10	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	49309945	49309945	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	silent	c.129	p.Q43	0.002	superfamily_Aminotrans_IV,pirsf_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	33	0	0	55	7	11.29	-	-	-	T	49309945	C	T	49309945	2	4	490	1	0	0	0	0	0	0	0	1	1359	912	32	2		2	BCAT2	19	49309945	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	364390	49309945	9819038	660	45335										
PPFIA3	0	genome.wustl.edu	37	chr19	49652821	49652821	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taggacagcgccaagtctttCagccgctccccatcctggcg	10	16	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	49652821	49652821	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	silent	c.3372	p.F1124	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	51	0	0	34	17	33.33	-	-	-	T	49652821	C	T	49652821	2	4	490	1	0	0	0	0	0	0	0	1	12384	825	29	2		2	PPFIA3	19	49652821	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	342876	49652821	9476162	661	45336										
HRC	0	genome.wustl.edu	37	chr19	49657684	49657684	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccgtggccttggtgcctgtGagcctggtgtctatattcaa	12	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	49657684	49657684	G	A	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.811	p.H271Y	0.007	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	53	0	0	63	14	18.18	-	-	-	A	49657684	G	A	49657684	3	1	490	1	0	0	0	0	1	0	0	0	7403	1290	45	2	1312	2	HRC	19	49657684	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	4863	49657684	9471299	662	45337										
PIH1D1	0	genome.wustl.edu	37	chr19	49952758	49952758	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccagttctgcatgaggctctCccagactcatggggatgcga	12	12	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	49952758	49952758	C	A	SNP	PIH1D1	ENST00000262265	human	ensembl	69_37n	-1	known	missense	c.311	p.G104V	1.000	NULL	NULL	-	no_errors	PIH1D1	HGNC	ENSG00000104872	41	0	0	43	12	21.82	-	-	-	A	49952758	C	A	49952758	3	1	490	1	0	0	0	0	1	0	0	0	11980	855	30	2	589	2	PIH1D1	19	49952758	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	295074	49952758	9176225	663	45338										
PIH1D1	0	genome.wustl.edu	37	chr19	49954100	49954100	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgggcttgctggagctccttCgaggcctgtataaaggaaaa	13	8	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	49954100	49954100	C	T	SNP	PIH1D1	ENST00000262265	human	ensembl	69_37n	-1	known	silent	c.96	p.S32	0.989	NULL	NULL	-	no_errors	PIH1D1	HGNC	ENSG00000104872	47	0	0	52	29	35.37	-	-	-	T	49954100	C	T	49954100	2	4	490	1	0	0	0	0	0	0	0	1	11980	871	31	1		1	PIH1D1	19	49954100	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1342	49954100	9174883	664	45339										
SIGLEC11	0	genome.wustl.edu	37	chr19	50463852	50463852	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttgctcaggaaactatgtctCacacggcttcctctctccac	6	15	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	50463852	50463852	C	T	SNP	SIGLEC11	ENST00000447370	human	ensembl	69_37n	-1	known	silent	c.417	p.V139	0.001	smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC11	HGNC	ENSG00000161640	64	0	0	72	8	10	-	-	-	T	50463852	C	T	50463852	2	4	490	1	0	0	0	0	0	0	0	1	14396	813	29	2		2	SIGLEC11	19	50463852	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	509752	50463852	8665131	665	45340										
KLK11	0	genome.wustl.edu	37	chr19	51526440	51526440	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gttctcacacttctggtgctCaatgatggtgatgttggcgc	12	9	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	51526440	51526440	C	G	SNP	KLK11	ENST00000319756	human	ensembl	69_37n	-1	known	missense	c.604	p.E202Q	0.006	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757	48	0	0	64	8	11.11	-	-	-	G	51526440	C	G	51526440	3	3	490	1	0	0	0	0	1	0	0	0	8452	835	29	2	252	2	KLK11	19	51526440	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1062588	51526440	7602543	666	45341										
ZNF432	0	genome.wustl.edu	37	chr19	52538020	52538020	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgatttcgctgatgtacaatGagattacgcttgcctgggaa	11	7	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	52538020	52538020	G	A	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	silent	c.912	p.L304	0.987	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	64	0	0	49	9	15.52	-	-	-	A	52538020	G	A	52538020	2	1	490	1	0	0	0	0	0	0	0	1	18002	1277	45	2		2	ZNF432	19	52538020	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1011580	52538020	6590963	667	45342										
KIR3DL3	0	genome.wustl.edu	37	chr19	55246797	55246797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctatcctcctcttctttctcCttcatcgctggtgtgccaac	5	16	4	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	55246797	55246797	C	T	SNP	KIR3DL3	ENST00000291860	human	ensembl	69_37n	1	known	missense	c.1027	p.L343F	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2	-	no_errors	KIR3DL3	HGNC	ENSG00000242019	40	0	0	69	11	13.75	-	-	-	T	55246797	C	T	55246797	3	4	490	1	0	0	0	0	1	0	0	0	8375	681	24	4	1049	4	KIR3DL3	19	55246797	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2708777	55246797	3882186	668	45343										
SUV420H2	0	genome.wustl.edu	37	chr19	55857665	55857665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggtgacatgcttctacggcGagggcttcttcggcgagaag	15	9	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	55857665	55857665	G	A	SNP	SUV420H2	ENST00000255613	human	ensembl	69_37n	1	known	missense	c.655	p.E219K	0.772	smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247	78	0	0	87	20	18.69	-	-	-	A	55857665	G	A	55857665	3	1	490	1	0	0	0	0	1	0	0	0	15506	1059	37	1	677	1	SUV420H2	19	55857665	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	610868	55857665	3271318	669	45344										
NLRP8	0	genome.wustl.edu	37	chr19	56466955	56466955	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctttaccctcgtgacttttCaggaattttttgcggccttg	8	10	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	56466955	56466955	C	A	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.1531	p.Q511K	1.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	104	0	0	99	19	16.1	-	-	-	A	56466955	C	A	56466955	3	1	490	1	0	0	0	0	1	0	0	0	10555	827	29	2	1541	2	NLRP8	19	56466955	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	609290	56466955	2662028	670	45345										
USP29	0	genome.wustl.edu	37	chr19	57641328	57641328	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccctgttgttgctaattttGagtttgaattgcagctctcc	9	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	57641328	57641328	G	C	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	missense	c.1285	p.E429Q	0.993	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	37	0	0	32	5	13.51	-	-	-	C	57641328	G	C	57641328	3	2	490	1	0	0	0	0	1	0	0	0	17156	1291	45	2	1287	2	USP29	19	57641328	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1174373	57641328	1487655	671	45346										
ZNF17	0	genome.wustl.edu	37	chr19	57931119	57931119	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccagaaggcccagccctgtGagacatgtagctcacttctg	10	14	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	57931119	57931119	G	C	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.259	p.E87Q	0.132	smart_Znf_C2H2-like,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	46	0	0	56	17	23.29	-	-	-	C	57931119	G	C	57931119	3	2	490	1	0	0	0	0	1	0	0	0	17839	1291	45	2	269	2	ZNF17	19	57931119	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	289791	57931119	1197864	672	45347										
ZNF772	0	genome.wustl.edu	37	chr19	57985229	57985229	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tttcccacattcaccgcactCataaggcctttctccagtgt	5	15	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	57985229	57985229	C	T	SNP	ZNF772	ENST00000343280	human	ensembl	69_37n	-1	known	missense	c.883	p.E295K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128	83	0	0	73	21	22.34	-	-	-	T	57985229	C	T	57985229	3	4	490	1	0	0	0	0	1	0	0	0	18238	835	29	2	590	2	ZNF772	19	57985229	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	54110	57985229	1143754	673	45348										
ZNF586	0	genome.wustl.edu	37	chr19	58287980	58287980	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggagtcttcttaatgaggctCagagatgcctgtaccgtgac	12	9	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	58287980	58287980	C	T	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	nonsense	c.106	p.Q36*	0.410	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	137	0	0	173	56	24.45	-	-	-	T	58287980	C	T	58287980	4	4	490	1	0	0	0	0	0	1	0	0	18115	827	29	2	112	2	ZNF586	19	58287980	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	302751	58287980	841003	674	45349										
ZNF497	0	genome.wustl.edu	37	chr19	58868303	58868303	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcacgcgccggtgctccagGaaattggagttccagctgaa	13	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	19	58868303	58868303	G	A	SNP	ZNF497	ENST00000311044	human	ensembl	69_37n	-1	known	silent	c.699	p.F233	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586	26	0	0	36	8	18.18	-	-	-	A	58868303	G	A	58868303	2	1	490	1	0	0	0	0	0	0	0	1	18042	1165	41	2		2	ZNF497	19	58868303	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	580323	58868303	260680	675	45350										
SIGLEC1	0	genome.wustl.edu	37	chr20	3686615	3686615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaggcatacgtagggagtgGagcagttgaagtccacctct	14	9	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	3686615	3686615	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	missense	c.482	p.S161F	1.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	46	0	0	46	10	17.86	-	-	-	A	3686615	G	A	3686615	3	1	490	1	0	0	0	0	1	0	0	0	14394	1174	41	2	4723	2	SIGLEC1	20	3686615	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09		3686615	59338905	676	45351										
SEL1L2	0	genome.wustl.edu	37	chr20	13830022	13830022	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctgtttcccatcacagccctGagcgggaaactgcagcggac	11	14	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	13830022	13830022	G	C	SNP	SEL1L2	ENST00000482196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEL1L2	HGNC	ENSG00000101251	49	0	0	41	11	21.15	-	-	-	C	13830022	G	C	13830022	1	2	490	0	1	0	0	0	0	0	0	0	14099	1305	45	2		2	SEL1L2	20	13830022	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10143407	13830022	49195498	677	45352										
SEL1L2	0	genome.wustl.edu	37	chr20	13830047	13830047	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaaactgcagcggactcttGatttggatgggaaactgttt	13	6	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	13830047	13830047	G	C	SNP	SEL1L2	ENST00000482196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.271	-	-	-	no_errors	SEL1L2	HGNC	ENSG00000101251	60	0	0	55	15	21.43	-	-	-	C	13830047	G	C	13830047	1	2	490	0	1	0	0	0	0	0	0	0	14099	1305	45	2		2	SEL1L2	20	13830047	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	25	13830047	49195473	678	45353										
ZNF133	0	genome.wustl.edu	37	chr20	18297346	18297346	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtgggcggggcttcagcctCaagtctcacctcagcagaca	12	13	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	18297346	18297346	C	G	SNP	ZNF133	ENST00000396026	human	ensembl	69_37n	1	known	silent	c.1860	p.L620	0.099	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	27	0	0	31	11	26.19	-	-	-	G	18297346	C	G	18297346	2	3	490	1	0	0	0	0	0	0	0	1	17819	813	29	2		2	ZNF133	20	18297346	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4467299	18297346	44728174	679	45354										
CRNKL1	0	genome.wustl.edu	37	chr20	20026011	20026011	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aaggtgctcatccatatgttCatctccaaagaattccacag	6	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	20026011	20026011	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1225	p.E409K	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	45	0	0	31	6	16.22	-	-	-	T	20026011	C	T	20026011	3	4	490	1	0	0	0	0	1	0	0	0	3921	835	29	2	1357	2	CRNKL1	20	20026011	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1728665	20026011	42999509	680	45355										
NINL	0	genome.wustl.edu	37	chr20	25448084	25448084	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cttgtctttctttaaaacctCaatttccttcctgttgaaga	4	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	25448084	25448084	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.3364	p.E1122K	0.010	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	37	0	0	50	6	10.71	-	-	-	T	25448084	C	T	25448084	3	4	490	1	0	0	0	0	1	0	0	0	10492	835	29	2	808	2	NINL	20	25448084	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5422073	25448084	37577436	681	45356										
ITCH	0	genome.wustl.edu	37	chr20	33037238	33037238	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcaagatttatttgctacatCacaaagtaaagaatttgatc	5	6	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	33037238	33037238	C	T	SNP	ITCH	ENST00000262650	human	ensembl	69_37n	1	known	missense	c.1286	p.S429L	1.000	superfamily_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	ITCH	HGNC	ENSG00000078747	92	0	0	78	11	12.22	-	-	-	T	33037238	C	T	33037238	3	4	490	1	0	0	0	0	1	0	0	0	7922	838	29	2	1201	2	ITCH	20	33037238	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	7589154	33037238	29988282	682	45357										
NCOA6	0	genome.wustl.edu	37	chr20	33329790	33329790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggaattctggcaatcactgtCctgaggcacattcaagctct	9	11	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	33329790	33329790	C	T	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.4270	p.D1424N	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	55	0	0	47	16	25.4	-	-	-	T	33329790	C	T	33329790	3	4	490	1	0	0	0	0	1	0	0	0	10305	855	30	2	1941	2	NCOA6	20	33329790	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	292552	33329790	29695730	683	45358										
FAM83C	0	genome.wustl.edu	37	chr20	33875226	33875226	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaccccgatggaactggagGaggggccgggagcgaggaag	20	9	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	33875226	33875226	G	A	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	silent	c.1356	p.L452	0.139	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	27	0	0	24	6	20	-	-	-	A	33875226	G	A	33875226	2	1	490	1	0	0	0	0	0	0	0	1	5680	1161	41	2		2	FAM83C	20	33875226	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	545436	33875226	29150294	684	45359										
SRC	0	genome.wustl.edu	37	chr20	36032156	36032156	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actgaactccttccccacttCtgtgccacccccggtctatg	6	18	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	36032156	36032156	C	T	SNP	SRC	ENST00000477066	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	83	0	0	103	13	11.21	-	-	-	T	36032156	C	T	36032156	1	4	490	0	1	0	0	0	0	0	0	0	15225	928	32	2		2	SRC	20	36032156	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2156930	36032156	26993364	685	45360										
CTNNBL1	0	genome.wustl.edu	37	chr20	36431299	36431299	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atctcccggagcagtgccctGaaagtgctggaccatgccat	11	13	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	36431299	36431299	G	T	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	silent	c.981	p.L327	1.000	superfamily_ARM-type_fold	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	20	0	0	18	8	30.77	-	-	-	T	36431299	G	T	36431299	2	4	490	1	0	0	0	0	0	0	0	1	4050	1277	45	2		2	CTNNBL1	20	36431299	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	399143	36431299	26594221	686	45361										
RALGAPB	0	genome.wustl.edu	37	chr20	37150316	37150316	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtagcaagaagactggagaaGagattctgccagcttattta	11	6	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	37150316	37150316	G	A	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.1594	p.E532K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	30	0	0	24	6	20	-	-	-	A	37150316	G	A	37150316	3	1	490	1	0	0	0	0	1	0	0	0	13098	943	33	2	1628	2	RALGAPB	20	37150316	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	719017	37150316	25875204	687	45362										
ADA	0	genome.wustl.edu	37	chr20	43249486	43249486	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tcaaaaacctggtcctaggtCaggacgtcaacacaaagatg	9	10	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	43249486	43249486	C	G	SNP	ADA	ENST00000464097	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ADA	HGNC	ENSG00000196839	17	0	0	26	10	27.78	-	-	-	G	43249486	C	G	43249486	1	3	490	0	1	0	0	0	0	0	0	0	230	841	29	2		2	ADA	20	43249486	RNA	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6099170	43249486	19776034	688	45363										
PABPC1L	0	genome.wustl.edu	37	chr20	43559250	43559250	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccagcgcaaagaggagcgGaaggccatcttgaccaacca	12	13	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	43559250	43559250	G	A	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	silent	c.1122	p.R374	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	44	0	0	42	8	16	-	-	-	A	43559250	G	A	43559250	2	1	490	1	0	0	0	0	0	0	0	1	11437	1161	41	2		2	PABPC1L	20	43559250	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	309764	43559250	19466270	689	45364										
NCOA5	0	genome.wustl.edu	37	chr20	44695740	44695740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agaacaatcaacgggcctttCggcatcaaagcgtctctgga	10	11	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	44695740	44695740	C	T	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.583	p.E195K	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	47	0	0	51	9	15	-	-	-	T	44695740	C	T	44695740	3	4	490	1	0	0	0	0	1	0	0	0	10304	893	31	1	1172	1	NCOA5	20	44695740	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1136490	44695740	18329780	690	45365										
NFATC2	0	genome.wustl.edu	37	chr20	50140431	50140431	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctggatcagttcgtgggacgGagtgatctcgatccgagggc	16	9	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	50140431	50140431	G	C	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	missense	c.349	p.P117A	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	33	0	0	44	6	12	-	-	-	C	50140431	G	C	50140431	3	2	490	1	0	0	0	0	1	0	0	0	10434	1174	41	2	2512	2	NFATC2	20	50140431	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5444691	50140431	12885089	691	45366										
ZFP64	0	genome.wustl.edu	37	chr20	50713636	50713636	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcaggtcttatttctcttctCagcagctggctgccctaaaa	8	12	3	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	50713636	50713636	C	G	SNP	ZFP64	ENST00000395979	human	ensembl	69_37n	-1	putative	nonstop	c.395	p.*132S	0.003	NULL	NULL	-	no_errors	ZFP64	HGNC	ENSG00000020256	74	0	0	92	12	11.43	-	-	-	G	50713636	C	G	50713636	4	3	490	1	0	0	0	0	0	0	0	0	17748	841	29	2		2	ZFP64	20	50713636	Nonstop_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	573205	50713636	12311884	692	45367										
LAMA5	0	genome.wustl.edu	37	chr20	60892512	60892512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctgcatcctctgcagcagtGgggtccgagccccatccagg	12	15	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	60892512	60892512	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.7400	p.P2467L	0.812	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	62	0	0	65	24	26.97	-	-	-	A	60892512	G	A	60892512	3	1	490	1	0	0	0	0	1	0	0	0	8663	1348	47	4	3791	4	LAMA5	20	60892512	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10178876	60892512	2133008	693	45368										
ZBTB46	0	genome.wustl.edu	37	chr20	62421190	62421190	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttacttgagtctcggctgctGaacggccaccccgacgtcgg	12	14	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	20	62421190	62421190	G	A	SNP	ZBTB46	ENST00000245663	human	ensembl	69_37n	-1	known	silent	c.921	p.F307	0.999	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584	40	0	0	41	11	20.75	-	-	-	A	62421190	G	A	62421190	2	1	490	1	0	0	0	0	0	0	0	1	17643	1281	45	2		2	ZBTB46	20	62421190	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1528678	62421190	604330	694	45369										
DONSON	0	genome.wustl.edu	37	chr21	34954336	34954336	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccaggaaaaactttcctcttCatcctcatcactgatggctt	5	13	4	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	34954336	34954336	C	T	SNP	DONSON	ENST00000303071	human	ensembl	69_37n	-1	known	missense	c.1072	p.E358K	1.000	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147	68	0	0	71	11	13.41	-	-	-	T	34954336	C	T	34954336	3	4	490	1	0	0	0	0	1	0	0	0	4741	835	29	2	644	2	DONSON	21	34954336	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		34954336	13175559	695	45370										
ITSN1	0	genome.wustl.edu	37	chr21	35172111	35172111	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccacctttttttgtaaacaGaaaaaggtccacttaccatt	4	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	35172111	35172111	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	splice_site	c.2183-1	e18-1	1.000	-	-	-	no_errors	ITSN1	HGNC	ENSG00000205726	55	0	0	48	13	21.31	-	-	-	A	35172111	G	A	35172111	5	1	490	1	0	0	0	0	0	0	1	0	7980	956	33	2	2252	2	ITSN1	21	35172111	Splice_Site	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	217775	35172111	12957784	696	45371										
DOPEY2	0	genome.wustl.edu	37	chr21	37571491	37571491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	taaaagctctggaaacctacGagattatctttaaaatcgtg	7	7	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	37571491	37571491	G	C	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.262	p.E88Q	1.000	pfam_Dopey_N	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	73	0	0	64	13	16.88	-	-	-	C	37571491	G	C	37571491	3	2	490	1	0	0	0	0	1	0	0	0	4743	1059	37	3	268	3	DOPEY2	21	37571491	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2399380	37571491	10558404	697	45372										
HMGN1	0	genome.wustl.edu	37	chr21	40720491	40720491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcttccttggcggcgccttCggcggagctgacctgcggag	15	14	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	40720491	40720491	C	T	SNP	HMGN1	ENST00000380749	human	ensembl	69_37n	-1	known	missense	c.28	p.E10K	0.909	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN1	HGNC	ENSG00000205581	14	0	0	9	9	50	-	-	-	T	40720491	C	T	40720491	3	4	490	1	0	0	0	0	1	0	0	0	7285	893	31	1	294	1	HMGN1	21	40720491	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3149000	40720491	7409404	698	45373										
DSCAM	0	genome.wustl.edu	37	chr21	41496179	41496179	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cggatgatgccgttcagcttGagagggggaagccaggacac	16	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	41496179	41496179	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.3639	p.L1213	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	47	0	0	41	9	18	-	-	-	A	41496179	G	A	41496179	2	1	490	1	0	0	0	0	0	0	0	1	4803	1277	45	2		2	DSCAM	21	41496179	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	775688	41496179	6633716	699	45374										
MX1	0	genome.wustl.edu	37	chr21	42812922	42812922	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggctctcagcatggcccagGaggtggaccccgagggagac	16	12	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	42812922	42812922	G	T	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	nonsense	c.700	p.E234*	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	23	0	0	30	5	14.29	-	-	-	T	42812922	G	T	42812922	4	4	490	1	0	0	0	0	0	1	0	0	10069	1175	41	2	718	2	MX1	21	42812922	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1316743	42812922	5316973	700	45375										
ABCG1	0	genome.wustl.edu	37	chr21	43714663	43714663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	caactccaggtggccactttCgtgggcccagtgacagccat	11	14	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	43714663	43714663	C	T	SNP	ABCG1	ENST00000489035	human	ensembl	69_37n	1	putative	missense	c.907	p.R303C	0.984	pfam_ABC_2_trans	pfam_ABC_2_trans	-	no_start_codon:pseudogene:no_stop_codon	ABCG1	HGNC	ENSG00000160179	44	0	0	49	16	24.62	-	-	-	T	43714663	C	T	43714663	3	4	490	1	0	0	0	0	1	0	0	0	68	883	31	1	1923	1	ABCG1	21	43714663	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	901741	43714663	4415232	701	45376										
TRPM2	0	genome.wustl.edu	37	chr21	45825917	45825917	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagatcatcattgtgaagcgGatggtaagggggcgggggca	18	5	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	45825917	45825917	G	C	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.2787	p.R929	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	31	0	0	43	13	23.21	-	-	-	C	45825917	G	C	45825917	2	2	490	1	0	0	0	0	0	0	0	1	16682	1161	41	2		2	TRPM2	21	45825917	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2111254	45825917	2303978	702	45377										
KRTAP10-5	0	genome.wustl.edu	37	chr21	45999959	45999959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	agcaggactgctggcaggggGaggaggtgcagcaagtcggc	20	8	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	45999959	45999959	G	A	SNP	KRTAP10-5	ENST00000400372	human	ensembl	69_37n	-1	known	missense	c.497	p.S166F	0.000	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	115	1	0.86	119	30	20.13	-	-	-	A	45999959	G	A	45999959	3	1	490	1	0	0	0	0	1	0	0	0	8565	1174	41	2	322	2	KRTAP10-5	21	45999959	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	174042	45999959	2129936	703	45378										
MCM3AP	0	genome.wustl.edu	37	chr21	47686981	47686981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcatgcgcaccacaccatCcaggggaaagatggtagatc	11	12	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	47686981	47686981	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.2704	p.D902N	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	25	0	0	25	12	31.58	-	-	-	T	47686981	C	T	47686981	3	4	490	1	0	0	0	0	1	0	0	0	9459	855	30	2	3314	2	MCM3AP	21	47686981	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1687022	47686981	442914	704	45379										
MCM3AP	0	genome.wustl.edu	37	chr21	47687012	47687012	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggtagatcgctgtgtgctCaccgtgtacgcaaagttgag	13	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	47687012	47687012	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	silent	c.2673	p.V891	0.998	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	34	0	0	31	12	27.91	-	-	-	T	47687012	C	T	47687012	2	4	490	1	0	0	0	0	0	0	0	1	9459	813	29	2		2	MCM3AP	21	47687012	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	31	47687012	442883	705	45380										
PCNT	0	genome.wustl.edu	37	chr21	47766851	47766851	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcagcacgagctggagctCctcagggagcagcacgcacg	14	14	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	47766851	47766851	C	T	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	silent	c.915	p.L305	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	31	0	0	21	4	16	-	-	-	T	47766851	C	T	47766851	2	4	490	1	0	0	0	0	0	0	0	1	11663	842	30	2		2	PCNT	21	47766851	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	79839	47766851	363044	706	45381										
PRMT2	0	genome.wustl.edu	37	chr21	48071892	48071892	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ctcagccctcaggccttcatCtctcctggcccatcttccta	5	19	5	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	21	48071892	48071892	C	G	SNP	PRMT2	ENST00000334494	human	ensembl	69_37n	1	novel	missense	c.829	p.L277V	0.004	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	57	0	0	63	19	22.89	-	-	-	G	48071892	C	G	48071892	3	3	490	1	0	0	0	0	1	0	0	0	12618	928	32	2		2	PRMT2	21	48071892	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	305041	48071892	58003	707	45382										
MICAL3	0	genome.wustl.edu	37	chr22	18301756	18301756	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagggtcactggctgtgatCggatgggagagtgcacagct	17	8	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	18301756	18301756	C	G	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.3671	p.R1224P	0.686	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	78	0	0	71	13	15.48	-	-	-	G	18301756	C	G	18301756	3	3	490	1	0	0	0	0	1	0	0	0	9642	884	31	3	2365	3	MICAL3	22	18301756	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		18301756	33002810	708	45383										
P2RX6	0	genome.wustl.edu	37	chr22	21380774	21380774	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcccttgcatcccaagcccgActggccgagtgcctcagacg	11	17	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	21380774	21380774	A	T	SNP	P2RX6	ENST00000413302	human	ensembl	69_37n	1	known	silent	c.1194	p.R398	0.000	NULL	pfam_P2X_purnocptor,prints_P2X6_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX6	HGNC	ENSG00000099957	49	0	0	66	11	14.29	-	-	-	T	21380774	A	T	21380774	2	4	490	1	0	0	0	0	0	0	0	1	11417	262	10	5		5	P2RX6	22	21380774	Silent	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	3079018	21380774	29923792	709	45384										
NEFH	0	genome.wustl.edu	37	chr22	29885286	29885286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cccctgagaaggccaagtctCcagcaaaggaagaggcaaag	12	11	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	29885286	29885286	C	T	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.1657	p.P553S	1.000	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	26	0	0	13	10	43.48	-	-	-	T	29885286	C	T	29885286	3	4	490	1	0	0	0	0	1	0	0	0	10386	855	30	2	1671	2	NEFH	22	29885286	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	8504512	29885286	21419280	710	45385										
UQCR10	0	genome.wustl.edu	37	chr22	30163496	30163496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgttcttcgagcgcgccttcGatcaaggcgcggacgctatc	12	13	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	30163496	30163496	G	A	SNP	UQCR10	ENST00000330029	human	ensembl	69_37n	1	known	missense	c.109	p.D37N	1.000	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	pfam_Ubiquinol_cyt_c_Rdtase_QCR9,superfamily_Ubiquinol_cyt_c_Rdtase_QCR9	-	no_errors	UQCR10	HGNC	ENSG00000184076	26	0	0	22	10	31.25	-	-	-	A	30163496	G	A	30163496	3	1	490	1	0	0	0	0	1	0	0	0	17113	1058	37	1	111	1	UQCR10	22	30163496	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	278210	30163496	21141070	711	45386										
SYN3	0	genome.wustl.edu	37	chr22	33260985	33260985	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atggaagatcttaatgagctGagagaactaggatagaagag	13	3	1	6			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	33260985	33260985	G	A	SNP	SYN3	ENST00000332840	human	ensembl	69_37n	-1	known	nonsense	c.628	p.Q210*	1.000	pfam_Synapsin_ATP-bd_dom	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666	29	0	0	19	11	36.67	-	-	-	A	33260985	G	A	33260985	4	1	490	1	0	0	0	0	0	1	0	0	15534	1299	45	2	1150	2	SYN3	22	33260985	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3097489	33260985	18043581	712	45387										
TRIOBP	0	genome.wustl.edu	37	chr22	38122318	38122318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	accgggcagctctgggggctCccggggctcagcgcctcccg	16	17	2	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	38122318	38122318	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	missense	c.3755	p.S1252F	0.938	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	61	0	0	49	7	12.5	-	-	-	T	38122318	C	T	38122318	3	4	490	1	0	0	0	0	1	0	0	0	16649	855	30	2	3773	2	TRIOBP	22	38122318	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	4861333	38122318	13182248	713	45388										
SCUBE1	0	genome.wustl.edu	37	chr22	43623467	43623467	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ggtgttgacgcagccctggtCacagctcccgttgctcatgc	12	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	43623467	43623467	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	69_37n	-1	known	missense	c.1120	p.D374N	0.999	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	46	0	0	66	15	18.52	-	-	-	T	43623467	C	T	43623467	3	4	490	1	0	0	0	0	1	0	0	0	14032	826	29	2	1898	2	SCUBE1	22	43623467	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	5501149	43623467	7681099	714	45389										
TRMU	0	genome.wustl.edu	37	chr22	46742358	46742358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggtcactatgcaagaacttCcctggaagatgaagaagtct	10	8	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	46742358	46742358	C	T	SNP	TRMU	ENST00000290846	human	ensembl	69_37n	1	known	missense	c.395	p.S132F	0.980	pfam_tRNA-specific_2-thiouridylase,tigrfam_tRNA-specific_2-thiouridylase	pfam_tRNA-specific_2-thiouridylase,pfam_ThiI_C_dom,pfam_NAD/GMP_synthase,tigrfam_tRNA-specific_2-thiouridylase	-	no_errors	TRMU	HGNC	ENSG00000100416	28	0	0	19	6	24	-	-	-	T	46742358	C	T	46742358	3	4	490	1	0	0	0	0	1	0	0	0	16667	855	30	2	409	2	TRMU	22	46742358	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3118891	46742358	4562208	715	45390										
TRMU	0	genome.wustl.edu	37	chr22	46746201	46746201	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttggcagcggtaaaactcctCcaggcagctgacagctttaa	10	11	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	46746201	46746201	C	T	SNP	TRMU	ENST00000290846	human	ensembl	69_37n	1	known	silent	c.492	p.L164	0.944	pfam_tRNA-specific_2-thiouridylase,tigrfam_tRNA-specific_2-thiouridylase	pfam_tRNA-specific_2-thiouridylase,pfam_ThiI_C_dom,pfam_NAD/GMP_synthase,tigrfam_tRNA-specific_2-thiouridylase	-	no_errors	TRMU	HGNC	ENSG00000100416	78	0	0	71	13	15.48	-	-	-	T	46746201	C	T	46746201	2	4	490	1	0	0	0	0	0	0	0	1	16667	842	30	2		2	TRMU	22	46746201	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	3843	46746201	4558365	716	45391										
HDAC10	0	genome.wustl.edu	37	chr22	50684419	50684419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgcagcgtgggggccctgcaGgccatggccaggccccagcg	17	15	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	22	50684419	50684419	G	C	SNP	HDAC10	ENST00000216271	human	ensembl	69_37n	-1	known	missense	c.1753	p.L585V	0.883	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC10	HGNC	ENSG00000100429	29	0	0	11	5	31.25	-	-	-	C	50684419	G	C	50684419	3	2	490	1	0	0	0	0	1	0	0	0	7056	991	35	4	268	4	HDAC10	22	50684419	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3938218	50684419	620147	717	45392										
SLC25A6	0	genome.wustl.edu	37	chrX	1510815	1510815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagcagcagcttgacccgctCgatcggagccacggccgtct	12	16	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	1510815	1510815	C	G	SNP	SLC25A6	ENST00000381401	human	ensembl	69_37n	-1	known	missense	c.88	p.E30Q	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100	58	0	0	74	21	22.11	-	-	-	G	1510815	C	G	1510815	3	3	490	1	0	0	0	0	1	0	0	0	14602	893	31	3	824	3	SLC25A6	23	1510815	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09		1510815	153759745	718	45393										
VCX	0	genome.wustl.edu	37	chrX	7811638	7811638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ccgtgacggcacctgaggcgGagagcgcgccagcggcaccc	16	16	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	7811638	7811638	G	A	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	missense	c.202	p.E68K	0.871	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	34	0	0	45	8	15.09	-	-	-	A	7811638	G	A	7811638	3	1	490	1	0	0	0	0	1	0	0	0	17239	1175	41	2	208	2	VCX	23	7811638	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	6300823	7811638	147458922	719	45394										
FAM9A	0	genome.wustl.edu	37	chrX	8763154	8763154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcctcttcttcttcttcctCttcctcttcttctgtttctt	1	15	9	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	8763154	8763154	C	G	SNP	FAM9A	ENST00000381003	human	ensembl	69_37n	-1	known	missense	c.796	p.E266Q	0.018	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304	44	0	0	33	6	15.38	-	-	-	G	8763154	C	G	8763154	3	3	490	1	0	0	0	0	1	0	0	0	5705	922	32	2	214	2	FAM9A	23	8763154	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	951516	8763154	146507406	720	45395										
MID1	0	genome.wustl.edu	37	chrX	10535385	10535385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcttgagcccgtctagacctCgctggctgagggtgatgaca	14	11	1	5			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	10535385	10535385	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.203	p.R68Q	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	38	0	0	53	13	19.7	-	-	-	T	10535385	C	T	10535385	3	4	490	1	0	0	0	0	1	0	0	0	9647	884	31	1	1836	1	MID1	23	10535385	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1772231	10535385	144735175	721	45396										
PRPS2	0	genome.wustl.edu	37	chrX	12840921	12840921	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	catgtcccgctataaatccaGaatgggaagtgtccagcaag	10	10	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	12840921	12840921	G	A	SNP	PRPS2	ENST00000460102	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRPS2	HGNC	ENSG00000101911	47	0	0	48	8	14.29	-	-	-	A	12840921	G	A	12840921	1	1	490	0	1	0	0	0	0	0	0	0	12661	957	33	2		2	PRPS2	23	12840921	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2305536	12840921	142429639	722	45397										
MBTPS2	0	genome.wustl.edu	37	chrX	21863500	21863500	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	atgaacaggtgttacaagttGtggtaagtatcgtcttttcg	11	5	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	21863500	21863500	G	C	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	missense	c.436	p.V146L	1.000	prints_Pept_M50_SREBP	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	62	0	0	45	6	11.76	-	-	-	C	21863500	G	C	21863500	3	2	490	1	0	0	0	0	1	0	0	0	9433	1377	48	4	446	4	MBTPS2	23	21863500	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	9022579	21863500	133407060	723	45398										
POLA1	0	genome.wustl.edu	37	chrX	24717574	24717574	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cagggagttttgtatcttctCgagcccggcgagaaaaaaaa	11	8	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	24717574	24717574	C	G	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.76	p.R26G	1.000	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	88	0	0	75	9	10.71	-	-	-	G	24717574	C	G	24717574	3	3	490	1	0	0	0	0	1	0	0	0	12261	876	31	3	64	3	POLA1	23	24717574	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2854074	24717574	130552986	724	45399										
MAGEB3	0	genome.wustl.edu	37	chrX	30254805	30254805	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	cacccaagatttggtgaagcTtaaatacctggagtaccgac	9	10	0	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	30254805	30254805	T	C	SNP	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	missense	c.764	p.L255P	0.030	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	48	0	0	42	6	12.5	-	-	-	C	30254805	T	C	30254805	3	2	490	1	0	0	0	0	1	0	0	0	9248	1609	56	5	766	5	MAGEB3	23	30254805	Missense_Mutation	SNP	T	TCGA-BH-A0B6-01A-11D-A19Y-09	5537231	30254805	125015755	725	45400										
LANCL3	0	genome.wustl.edu	37	chrX	37515015	37515015	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aagcagtatgccataaagaaGaggaaaccattccccctgat	8	10	0	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	37515015	37515015	G	A	SNP	LANCL3	ENST00000378619	human	ensembl	69_37n	1	known	silent	c.648	p.K216	1.000	pfam_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036	41	0	0	40	10	20	-	-	-	A	37515015	G	A	37515015	2	1	490	1	0	0	0	0	0	0	0	1	8676	933	33	2		2	LANCL3	23	37515015	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	7260210	37515015	117755545	726	45401										
ZNF157	0	genome.wustl.edu	37	chrX	47272097	47272097	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatcatacctcattgctcatCagaaaactcacacaggggag	8	11	5	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	47272097	47272097	C	G	SNP	ZNF157	ENST00000377073	human	ensembl	69_37n	1	known	missense	c.625	p.Q209E	0.934	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117	41	0	0	36	4	10	-	-	-	G	47272097	C	G	47272097	3	3	490	1	0	0	0	0	1	0	0	0	17833	827	29	2	639	2	ZNF157	23	47272097	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9757082	47272097	107998463	727	45402										
WDR45	0	genome.wustl.edu	37	chrX	48934351	48934351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	actggcttggtgaaggtgaaCtccagcaccagcttctcctt	10	12	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	48934351	48934351	C	T	SNP	WDR45	ENST00000367375	human	ensembl	69_37n	-1	novel	missense	c.163	p.V55I	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR45	HGNC	ENSG00000196998	52	0	0	29	6	17.14	-	-	-	T	48934351	C	T	48934351	3	4	490	1	0	0	0	0	1	0	0	0	17394	564	20	4	816	4	WDR45	23	48934351	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1662254	48934351	106336209	728	45403										
WNK3	0	genome.wustl.edu	37	chrX	54275292	54275292	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tctttaattccacagtgactGatggctatgacttctgtcac	7	10	3	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	54275292	54275292	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	silent	c.3489	p.I1163	0.758	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	63	0	0	55	9	14.06	-	-	-	A	54275292	G	A	54275292	2	1	490	1	0	0	0	0	0	0	0	1	17476	1280	45	2		2	WNK3	23	54275292	Silent	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5340941	54275292	100995268	729	45404										
AR	0	genome.wustl.edu	37	chrX	66937361	66937361	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acgaccagatggctgtcattCagtactcctggatggggctc	12	11	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	66937361	66937361	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	nonsense	c.2215	p.Q739*	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	83	0	0	75	21	21.88	-	-	-	T	66937361	C	T	66937361	4	4	490	1	0	0	0	0	0	1	0	0	838	827	29	2	2257	2	AR	23	66937361	Nonsense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	12662069	66937361	88333199	730	45405										
PJA1	0	genome.wustl.edu	37	chrX	68381728	68381728	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcttccagggatgcctgctCttcctgaagagatggttctc	10	11	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	68381728	68381728	C	G	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.1354	p.E452Q	0.428	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	79	0	0	98	19	16.24	-	-	-	G	68381728	C	G	68381728	3	3	490	1	0	0	0	0	1	0	0	0	12035	922	32	2	581	2	PJA1	23	68381728	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1444367	68381728	86888832	731	45406										
OTUD6A	0	genome.wustl.edu	37	chrX	69282995	69282995	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gacgacttcatgatctactgCgacaacatcgtgcgcaccac	8	14	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	69282995	69282995	C	T	SNP	OTUD6A	ENST00000338352	human	ensembl	69_37n	1	known	silent	c.621	p.C207	0.459	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401	31	0	0	27	9	25	-	-	-	T	69282995	C	T	69282995	2	4	490	1	0	0	0	0	0	0	0	1	11389	776	27	1		1	OTUD6A	23	69282995	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	901267	69282995	85987565	732	45407										
TAF1	0	genome.wustl.edu	37	chrX	70749751	70749751	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgagctctcacatctttaaaGactgttggtgctgagagaaa	10	7	2	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	70749751	70749751	G	A	SNP	TAF1	ENST00000461764	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.712	-	-	-	no_errors	TAF1	HGNC	ENSG00000147133	10	0	0	11	4	26.67	-	-	-	A	70749751	G	A	70749751	1	1	490	0	1	0	0	0	0	0	0	0	15605	957	33	2		2	TAF1	23	70749751	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1466756	70749751	84520809	733	45408										
ATRX	0	genome.wustl.edu	37	chrX	76937961	76937961	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	acttccaaagaagtaaaactCtgctctttcccagaaagctt	5	11	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	76937961	76937961	C	G	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.2787	p.Q929H	0.018	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	54	0	0	35	8	18.6	-	-	-	G	76937961	C	G	76937961	3	3	490	1	0	0	0	0	1	0	0	0	1212	912	32	2	4799	2	ATRX	23	76937961	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	6188210	76937961	78332599	734	45409										
PGK1	0	genome.wustl.edu	37	chrX	77359848	77359848	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tatttccaaaatgtcgctttCtaacaagctgacgctggaca	7	10	1	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	77359848	77359848	C	G	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.11	p.S4C	1.000	NULL	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	47	0	0	38	5	11.63	-	-	-	G	77359848	C	G	77359848	3	3	490	1	0	0	0	0	1	0	0	0	11864	913	32	2	13	2	PGK1	23	77359848	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	421887	77359848	77910712	735	45410										
BRWD3	0	genome.wustl.edu	37	chrX	79959038	79959038	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tatagtatccaagatccactGaggggcaaaccattcttcat	7	10	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	79959038	79959038	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	nonsense	c.2776	p.Q926*	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	76	0	0	55	7	11.29	-	-	-	A	79959038	G	A	79959038	4	1	490	1	0	0	0	0	0	1	0	0	1534	1299	45	2	2704	2	BRWD3	23	79959038	Nonsense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	2599190	79959038	75311522	736	45411										
TIMM8A	0	genome.wustl.edu	37	chrX	100603691	100603691	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcagagacgaactccgcaccGaccttcacgtgtctccgcga	10	16	2	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	100603691	100603691	G	T	SNP	TIMM8A	ENST00000480575	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TIMM8A	HGNC	ENSG00000126953	59	0	0	57	15	20.83	-	-	-	T	100603691	G	T	100603691	1	4	490	0	1	0	0	0	0	0	0	0	16009	1073	37	3		3	TIMM8A	23	100603691	RNA	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	20644653	100603691	54666869	737	45412										
GPRASP2	0	genome.wustl.edu	37	chrX	101971235	101971235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ataggttcagagatgcagctGaggagcttaatgcatcctcc	11	9	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	101971235	101971235	G	A	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1438	p.E480K	0.937	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	62	0	0	43	6	12.24	-	-	-	A	101971235	G	A	101971235	3	1	490	1	0	0	0	0	1	0	0	0	6774	1291	45	2	1440	2	GPRASP2	23	101971235	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	1367544	101971235	53299325	738	45413										
NRK	0	genome.wustl.edu	37	chrX	105144612	105144612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcatctttgtctttgcagaGtgatgtgtggtctgtgggaa	14	5	4	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	105144612	105144612	G	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.713	p.S238N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	79	0	0	56	7	11.11	-	-	-	A	105144612	G	A	105144612	3	1	490	1	0	0	0	0	1	0	0	0	10728	1043	36	4	747	4	NRK	23	105144612	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	3173377	105144612	50125948	739	45414										
CXorf57	0	genome.wustl.edu	37	chrX	105868386	105868386	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtggaatgccctgtgtcctGagtggtataaaagtttgcgg	14	6	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	105868386	105868386	G	C	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.853	p.E285Q	1.000	superfamily_NA-bd_OB-fold-like	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	97	0	0	75	19	20.21	-	-	-	C	105868386	G	C	105868386	3	2	490	1	0	0	0	0	1	0	0	0	4144	1291	45	2	863	2	CXorf57	23	105868386	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	723774	105868386	49402174	740	45415										
TBC1D8B	0	genome.wustl.edu	37	chrX	106082596	106082596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttttgaggtgcaatctttgaCaagtcagagggaatgcagta	12	5	2	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	106082596	106082596	C	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.1262	p.T421I	0.109	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	43	0	0	47	7	12.96	-	-	-	T	106082596	C	T	106082596	3	4	490	1	0	0	0	0	1	0	0	0	15721	478	17	4	1292	4	TBC1D8B	23	106082596	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	214210	106082596	49187964	741	45416										
IRS4	0	genome.wustl.edu	37	chrX	107979343	107979343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtagccgcgtttgcagacttCctccccgacgggcaggtcct	12	15	0	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	107979343	107979343	C	T	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.232	p.E78K	1.000	pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	78	0	0	74	23	23.71	-	-	-	T	107979343	C	T	107979343	3	4	490	1	0	0	0	0	1	0	0	0	7896	864	30	2	3545	2	IRS4	23	107979343	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	1896747	107979343	47291217	742	45417										
DCX	0	genome.wustl.edu	37	chrX	110574018	110574018	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttagtccctgaattgatagaAtagggtttcatggagacaca	10	6	1	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	110574018	110574018	A	T	SNP	DCX	ENST00000496551	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DCX	HGNC	ENSG00000077279	49	0	0	49	12	19.67	-	-	-	T	110574018	A	T	110574018	1	4	490	0	1	0	0	0	0	0	0	0	4349	116	4	5		5	DCX	23	110574018	RNA	SNP	A	TCGA-BH-A0B6-01A-11D-A19Y-09	2594675	110574018	44696542	743	45418										
SLC6A14	0	genome.wustl.edu	37	chrX	115585533	115585533	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gatttatttcccaaagtgatGaagaaaatgagggttcccat	9	6	0	4			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	115585533	115585533	G	A	SNP	SLC6A14	ENST00000371900	human	ensembl	69_37n	1	known	missense	c.1329	p.M443I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916	68	0	0	71	11	13.41	-	-	-	A	115585533	G	A	115585533	3	1	490	1	0	0	0	0	1	0	0	0	14766	1290	45	2	1367	2	SLC6A14	23	115585533	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	5011515	115585533	39685027	744	45419										
DCAF12L1	0	genome.wustl.edu	37	chrX	125685957	125685957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gcgccacagtgccgtcgcggGagccgctcacggctacggtg	16	15	1	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	125685957	125685957	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	missense	c.635	p.S212F	0.977	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	111	0	0	159	19	10.61	-	-	-	A	125685957	G	A	125685957	3	1	490	1	0	0	0	0	1	0	0	0	4296	1174	41	2	760	2	DCAF12L1	23	125685957	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	10100424	125685957	29584603	745	45420										
GPR112	0	genome.wustl.edu	37	chrX	135429149	135429149	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	ttcagaggccacggtaatctCtgtcaggaagacatccatgg	11	10	3	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	135429149	135429149	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.3284	p.S1095F	0.006	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	43	0	0	45	15	25	-	-	-	T	135429149	C	T	135429149	3	4	490	1	0	0	0	0	1	0	0	0	6679	913	32	2	3294	2	GPR112	23	135429149	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	9743192	135429149	19841411	746	45421										
RBMX	0	genome.wustl.edu	37	chrX	135956543	135956543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gtcacgtgagctgctgtaatCatcatagcgactgcttccac	9	12	3	1			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	135956543	135956543	C	T	SNP	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	missense	c.934	p.D312N	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	91	0	0	96	15	13.51	-	-	-	T	135956543	C	T	135956543	3	4	490	1	0	0	0	0	1	0	0	0	13234	826	29	2	300	2	RBMX	23	135956543	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	527394	135956543	19314017	747	45422										
HMGB3	0	genome.wustl.edu	37	chrX	150156382	150156382	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	aggaggaggaggaggaggatGaataaagaaactgtttatct	15	2	1	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	150156382	150156382	G	A	SNP	HMGB3	ENST00000325307	human	ensembl	69_37n	1	known	missense	c.598	p.E200K	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB3	HGNC	ENSG00000029993	34	0	0	19	3	13.64	-	-	-	A	150156382	G	A	150156382	3	1	490	1	0	0	0	0	1	0	0	0	7278	1291	45	2	612	2	HMGB3	23	150156382	Missense_Mutation	SNP	G	TCGA-BH-A0B6-01A-11D-A19Y-09	14199839	150156382	5114178	748	45423										
PRRG3	0	genome.wustl.edu	37	chrX	150873749	150873749	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	attctgtaaagcagatgcttCgctgtcagactggccgctcc	10	12	2	2			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	150873749	150873749	C	T	SNP	PRRG3	ENST00000448324	human	ensembl	69_37n	1	known	silent	c.153	p.F51	0.000	NULL	NULL	-	no_start_codon	PRRG3	HGNC	ENSG00000130032	66	0	0	51	7	12.07	-	-	-	T	150873749	C	T	150873749	2	4	490	1	0	0	0	0	0	0	0	1	12687	899	31	1		1	PRRG3	23	150873749	Silent	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	717367	150873749	4396811	749	45424										
GABRA3	0	genome.wustl.edu	37	chrX	151366132	151366132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	tgtacgggcaggaacagactCtctgttgagccagaacgaca	12	10	1	3			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	151366132	151366132	C	G	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.904	p.E302Q	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	29	0	0	40	8	16.67	-	-	-	G	151366132	C	G	151366132	3	3	490	1	0	0	0	0	1	0	0	0	6211	922	32	2	586	2	GABRA3	23	151366132	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	492383	151366132	3904428	750	45425										
FLNA	0	genome.wustl.edu	37	chrX	153595102	153595102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.633064516129032	471	1.09392719084056e-204	4.52677077106993	5.30066512193902	4.06537532672756	0.000222802354297918	0.00640884419127541	367	gccagcagctggccctacctCctcctggtgtccggccgggt	13	17	0	0			TCGA-BH-A0B6-01A-11D-A19Y-09	TCGA-BH-A0B6-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e575ee5-731c-49fd-80fc-944b861e0ea7	7b99568d-3c2e-41a9-b8b8-0ba296a21aaf	X	153595102	153595102	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	31	0	0	41	5	10.87	-	-	-	T	153595102	C	T	153595102	3	4	490	1	0	0	0	0	1	0	0	0	5979	864	30	2	7130	2	FLNA	23	153595102	Missense_Mutation	SNP	C	TCGA-BH-A0B6-01A-11D-A19Y-09	2228970	153595102	1675458	751	45426										
ROR1	0	genome.wustl.edu	37	chr1	64624790	64624790	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	ctgtcggaataaccagaagtCatcgtcggcaccagtccaga	10	12	1	2			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	1	64624790	64624790	C	T	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	missense	c.1301	p.S434L	1.000	pirsf_Tyr_kinase_rcpt_ROR	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	226	0	0	209	25	10.68	-	-	-	T	64624790	C	T	64624790	3	4	491	1	0	0	0	0	1	0	0	0	13612	838	29	2	1339	2	ROR1	1	64624790	Missense_Mutation	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09		64624790	184625831	1	45427										
HRNR	0	genome.wustl.edu	37	chr1	152191571	152191571	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	atgactgccctgacgtagatCcatgtcgtccctggctagag	11	12	0	4			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	1	152191571	152191571	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.2534	p.G845A	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	298	0	0	194	30	13.39	-	-	-	G	152191571	C	G	152191571	3	3	491	1	0	0	0	0	1	0	0	0	7410	855	30	2	6022	2	HRNR	1	152191571	Missense_Mutation	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09	87566781	152191571	97059050	2	45428										
WNT7A	0	genome.wustl.edu	37	chr3	13860453	13860453	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	cacggggctcacttgcacgtGtacatctccgtgcgctcgct	11	15	2	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-11A-34D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	5fcc5f15-40eb-496a-9224-b945b471c43e	3	13860453	13860453	G	T	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	nonsense	c.1038	p.Y346*	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	53	0	0	36	4	10	-	-	-	T	13860453	G	T	13860453	4	4	491	1	0	0	0	0	0	1	0	0	17491	1372	48	4	15	4	WNT7A	3	13860453	Nonsense_Mutation	SNP	G	TCGA-BH-A0B7-01A-12D-A10Y-09		13860453	184161977	3	45429										
IGSF10	0	genome.wustl.edu	37	chr3	151161292	151161292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	cacacatttgtaaaagccacGgtcataaatactgagattgt	7	8	1	1			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	3	151161292	151161292	G	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.5443	p.R1815C	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	87	0	0	73	11	13.1	-	-	-	A	151161292	G	A	151161292	3	1	491	1	0	0	0	0	1	0	0	0	7651	1116	39	1	2484	1	IGSF10	3	151161292	Missense_Mutation	SNP	G	TCGA-BH-A0B7-01A-12D-A10Y-09	137300839	151161292	46861138	4	45430										
PCDHGA12	0	genome.wustl.edu	37	chr5	140810665	140810665	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	gacattctgatggaggataaAgtgaaaatatatggagtaga	12	2	1	3			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	5	140810665	140810665	A	C	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	missense	c.339	p.K113N	0.910	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	77	0	0	56	14	20	-	-	-	C	140810665	A	C	140810665	3	2	491	1	0	0	0	0	1	0	0	0	11626	69	3	5	341	5	PCDHGA12	5	140810665	Missense_Mutation	SNP	A	TCGA-BH-A0B7-01A-12D-A10Y-09		140810665	40104595	5	45431										
TPST1	0	genome.wustl.edu	37	chr7	65705728	65705728	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	aggaaaccagggtcattcccCgaatcctggccctgaagcag	11	13	1	1			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	7	65705728	65705728	C	T	SNP	TPST1	ENST00000304842	human	ensembl	69_37n	1	known	nonsense	c.316	p.R106*	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	TPST1	HGNC	ENSG00000169902	93	0	0	120	22	15.49	-	-	-	T	65705728	C	T	65705728	4	4	491	1	0	0	0	0	0	1	0	0	16523	644	23	1	318	1	TPST1	7	65705728	Nonsense_Mutation	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09		65705728	93432935	6	45432										
CALN1	0	genome.wustl.edu	37	chr7	71743768	71743768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	cccttgtacaacaagccggcGgtcacatggtggaacggcat	12	12	1	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	7	71743768	71743768	G	A	SNP	CALN1	ENST00000433253	human	ensembl	69_37n	-1	known	missense	c.151	p.R51C	0.609	NULL	NULL	-	no_errors	CALN1	HGNC	ENSG00000183166	42	0	0	79	12	13.19	-	-	-	A	71743768	G	A	71743768	3	1	491	1	0	0	0	0	1	0	0	0	2616	1103	39	1	658	1	CALN1	7	71743768	Missense_Mutation	SNP	G	TCGA-BH-A0B7-01A-12D-A10Y-09	6038040	71743768	87394895	7	45433										
CDK20	0	genome.wustl.edu	37	chr9	90582257	90582257	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	gcaagggctaaggggcagggTgtggtgtgggcccactgtgg	21	7	0	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-11A-34D-A10Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	5fcc5f15-40eb-496a-9224-b945b471c43e	9	90582257	90582257	T	G	SNP	CDK20	ENST00000459720	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDK20	HGNC	ENSG00000156345	53	0	0	36	6	13.64	-	-	-	G	90582257	T	G	90582257	1	3	491	0	1	0	0	0	0	0	0	0	3166	1711	59	5		5	CDK20	9	90582257	RNA	SNP	T	TCGA-BH-A0B7-01A-12D-A10Y-09		90582257	50631174	8	45434										
COL17A1	0	genome.wustl.edu	37	chr10	105796340	105796340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	ggctcctggtggccctggcgGaccccgagggcccatcaagt	15	15	1	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-11A-34D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	5fcc5f15-40eb-496a-9224-b945b471c43e	10	105796340	105796340	G	T	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.3328	p.P1110T	0.214	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	38	0	0	37	6	13.95	-	-	-	T	105796340	G	T	105796340	3	4	491	1	0	0	0	0	1	0	0	0	3704	1174	41	2	1201	2	COL17A1	10	105796340	Missense_Mutation	SNP	G	TCGA-BH-A0B7-01A-12D-A10Y-09		105796340	29738407	9	45435										
SACS	0	genome.wustl.edu	37	chr13	23910597	23910597	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	tggtatcctttacttttatcCaagggcaatcattgtagcat	7	8	1	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	13	23910597	23910597	C	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.7418	p.W2473S	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	221	0	0	116	18	13.33	-	-	-	G	23910597	C	G	23910597	3	3	491	1	0	0	0	0	1	0	0	0	13890	595	21	4	6325	4	SACS	13	23910597	Missense_Mutation	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09		23910597	91259281	10	45436										
VPS53	0	genome.wustl.edu	37	chr17	505056	505056	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	tgatctaaatctcctttctcCgttgccagttcctccatctc	4	15	4	1			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	17	505056	505056	C	T	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	silent	c.1197	p.T399	0.005	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	350	0	0	315	43	12.01	-	-	-	T	505056	C	T	505056	2	4	491	1	0	0	0	0	0	0	0	1	17312	639	23	1		1	VPS53	17	505056	Silent	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09		505056	80690154	11	45437										
TP53	0	genome.wustl.edu	37	chr17	7578290	7578290	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	atgctgaggaggggccagacCtaagagcaatcagtgaggaa	15	7	1	4			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	17	7578290	7578290	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	136	0	0	95	44	31.65	-	-	-	T	7578290	C	T	7578290	5	4	491	1	0	0	0	0	0	0	1	0	16477	695	24	4	735	4	TP53	17	7578290	Splice_Site	SNP	C	TCGA-BH-A0B7-01A-12D-A10Y-09	7073234	7578290	73616920	12	45438										
TCF4	0	genome.wustl.edu	37	chr18	52928746	52928746	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	cagtctgggagctgccggctGccccgcttcctctatttgct	11	15	2	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	18	52928746	52928746	G	A	SNP	TCF4	ENST00000570146	human	ensembl	69_37n	-1	putative	nonsense	c.205	p.Q69*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF4	HGNC	ENSG00000196628	47	0	0	57	9	13.64	-	-	-	A	52928746	G	A	52928746	4	1	491	1	0	0	0	0	0	1	0	0	15790	1319	46	4	1106	4	TCF4	18	52928746	Nonsense_Mutation	SNP	G	TCGA-BH-A0B7-01A-12D-A10Y-09		52928746	25148502	13	45439										
ADAMTS10	0	genome.wustl.edu	37	chr19	8651269	8651269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.904872247913239	1.09375	0	1.40625	1	1	0	acttggtccagggcgcatagTgccaggagtaggggggcagc	18	9	0	0			TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	19	8651269	8651269	T	G	SNP	ADAMTS10	ENST00000270328	human	ensembl	69_37n	-1	known	missense	c.2489	p.H830P	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303	22	0	0	36	9	20	-	-	-	G	8651269	T	G	8651269	3	3	491	1	0	0	0	0	1	0	0	0	256	1696	59	5	846	5	ADAMTS10	19	8651269	Missense_Mutation	SNP	T	TCGA-BH-A0B7-01A-12D-A10Y-09		8651269	50477714	14	45440										
RSC1A1	0	genome.wustl.edu	37	chr1	15987818	15987818	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	aaaacatccaatcagttacaCtgcaccttaggtgtagaaat	6	9	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	15987818	15987818	C	T	SNP	RSC1A1	ENST00000345034	human	ensembl	69_37n	1	known	silent	c.1455	p.H485	0.009	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695	119	0	0	120	14	10.45	-	-	-	T	15987818	C	T	15987818	2	4	492	1	0	0	0	0	0	0	0	1	13784	564	20	4		4	RSC1A1	1	15987818	Silent	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09		15987818	233262803	1	45441										
SPEN	0	genome.wustl.edu	37	chr1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tcccgccctgtgagttctctGagagtcacctgtcccgcctg							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	16265833	16265834	GA	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	136	0	0	75	13	14.77	-	-	-	-	16265834	GA	-	16265833	7	5	492	1	0	1	0	1	0	0	0	0	15129	1291	45	0	10964	0	SPEN	1	16265833	Frame_Shift_Del	DEL	GA	TCGA-BH-A0B8-01A-21W-A071-09	278015	16265833	232984788	2	45442										
AIM1L	0	genome.wustl.edu	37	chr1	26658066	26658067	+	Frame_Shift_Ins	INS	-	-	A													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	aactcgccctcagagagaatINSgtgctggtcaccctcgaagt							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	26658066	26658067	-	A	INS	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1606_1605	p.I535fs	0.994:0.993	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	37	0	0	49	129	72.47	-	-	-	A	26658067	-	A	26658066	7	5	492	1	0	1	1	0	0	0	0	0	431	1464	51	0	781	0	AIM1L	1	26658066	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09	10392233	26658066	222592555	3	45443										
USH2A	0	genome.wustl.edu	37	chr1	215955505	215955505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ttccccgaaaacgttcaattCcatttcgaagaaggatgtag	8	9	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	215955505	215955505	C	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10619	p.G3540V	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	118	0	0	145	111	43.36	-	-	-	A	215955505	C	A	215955505	3	1	492	1	0	0	0	0	1	0	0	0	17133	855	30	2	5065	2	USH2A	1	215955505	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	189297439	215955505	33295116	4	45444										
OR2G6	0	genome.wustl.edu	37	chr1	248685620	248685620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	atggctttatcactcaagctGtgttaaggataaaatcagct	8	7	3	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	248685620	248685620	G	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	missense	c.673	p.V225L	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	305	0	0	289	174	37.5	-	-	-	T	248685620	G	T	248685620	3	4	492	1	0	0	0	0	1	0	0	0	11073	1377	48	4	675	4	OR2G6	1	248685620	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09	32730115	248685620	565001	5	45445										
ZNF672	0	genome.wustl.edu	37	chr1	249141669	249141669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	cgcacaggcgcacgcatgctGgccagaccctctacatctgc	10	17	2	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	249141669	249141669	G	A	SNP	ZNF672	ENST00000306562	human	ensembl	69_37n	1	known	missense	c.196	p.G66S	0.662	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161	11	0	0	17	11	39.29	-	-	-	A	249141669	G	A	249141669	3	1	492	1	0	0	0	0	1	0	0	0	18175	1348	47	4	198	4	ZNF672	1	249141669	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09	456049	249141669	108952	6	45446										
SDPR	0	genome.wustl.edu	37	chr2	192700907	192700907	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	accagagcgctggcgagggaCgcttcggaatgaccctctgc	14	13	1	2			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	2	192700907	192700907	C	T	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	silent	c.1020	p.A340	0.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	223	0	0	164	78	32.23	-	-	-	T	192700907	C	T	192700907	2	4	492	1	0	0	0	0	0	0	0	1	14058	523	19	1		1	SDPR	2	192700907	Silent	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09		192700907	50498466	7	45447										
HNRNPD	0	genome.wustl.edu	37	chr4	83277695	83277695	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	aagtatagtacttactgctaTaatcaccatatccatagtag	5	8	1	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	4	83277695	83277695	T	C	SNP	HNRNPD	ENST00000313899	human	ensembl	69_37n	-1	known	missense	c.995	p.Y332C	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	163	0	0	46	117	71.78	-	-	-	C	83277695	T	C	83277695	3	2	492	1	0	0	0	0	1	0	0	0	7315	1406	49	5	80	5	HNRNPD	4	83277695	Missense_Mutation	SNP	T	TCGA-BH-A0B8-01A-21W-A071-09		83277695	107876581	8	45448										
MYO10	0	genome.wustl.edu	37	chr5	16675085	16675085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	cggggtggggcactttgttgGtctgtttgataagctggcag	17	6	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	16675085	16675085	G	C	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.4841	p.T1614S	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	120	0	0	147	23	13.53	-	-	-	C	16675085	G	C	16675085	3	2	492	1	0	0	0	0	1	0	0	0	10134	1261	44	4	1363	4	MYO10	5	16675085	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09		16675085	164240175	9	45449										
PHF15	0	genome.wustl.edu	37	chr5	133896481	133896481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	attagagcgtgtgctggaggAgctggagaccctgtgccacc	15	10	0	2			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	133896481	133896481	A	G	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.566	p.E189G	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	29	0	0	12	13	52	-	-	-	G	133896481	A	G	133896481	3	3	492	1	0	0	0	0	1	0	0	0	11900	304	11	5	536	5	PHF15	5	133896481	Missense_Mutation	SNP	A	TCGA-BH-A0B8-01A-21W-A071-09	117221396	133896481	47018779	10	45450										
PCDHA1	0	genome.wustl.edu	37	chr5	140167742	140167742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gcggcgcgcgcatcccgttcCgcgtggggctgtacacgggc	17	15	0	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	140167742	140167742	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.1867	p.R623C	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	19	0	0	59	20	25.32	-	-	-	T	140167742	C	T	140167742	3	4	492	1	0	0	0	0	1	0	0	0	11592	652	23	1	1869	1	PCDHA1	5	140167742	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	6271261	140167742	40747518	11	45451										
BTNL3	0	genome.wustl.edu	37	chr5	180420116	180420116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gtatgggtgctggttcagttCccagatttacgatgaggagg	15	6	1	2			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	180420116	180420116	C	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	missense	c.353	p.S118Y	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	43	0	0	82	21	20.39	-	-	-	A	180420116	C	A	180420116	3	1	492	1	0	0	0	0	1	0	0	0	1575	855	30	2	359	2	BTNL3	5	180420116	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	40252374	180420116	495144	12	45452										
SYNE1	0	genome.wustl.edu	37	chr6	152652194	152652194	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ttttgtaaaacactgtcataGacactctgcaattcctgaag	6	9	2	2			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	6	152652194	152652194	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.13626	p.V4542	0.970	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	308	0	0	362	46	11.25	-	-	-	A	152652194	G	A	152652194	2	1	492	1	0	0	0	0	0	0	0	1	15537	929	33	2		2	SYNE1	6	152652194	Silent	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09		152652194	18462873	13	45453										
FNDC1	0	genome.wustl.edu	37	chr6	159670105	159670105	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	acgtcaaggccaccaaccacCactgagccttcgaccactgc	7	18	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	6	159670105	159670105	C	A	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	1	novel	missense	c.4411	p.H1471N	0.985	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	26	0	0	7	16	69.57	-	-	-	A	159670105	C	A	159670105	3	1	492	1	0	0	0	0	1	0	0	0	6014	581	21	4	4787	4	FNDC1	6	159670105	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	7017911	159670105	11444962	14	45454										
CDK14	0	genome.wustl.edu	37	chr7	90233551	90233551	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gctttgaagaaagatgacacCacctttgatgaggtaggtta	11	6	0	6			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	7	90233551	90233551	C	T	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	silent	c.111	p.T37	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	25	0	0	24	4	14.29	-	-	-	T	90233551	C	T	90233551	2	4	492	1	0	0	0	0	0	0	0	1	3159	609	21	4		4	CDK14	7	90233551	Silent	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09		90233551	68905112	15	45455										
SMO	0	genome.wustl.edu	37	chr7	128852230	128852230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gccgccgacagggcctggggCctattcactcccgcaccaac	11	18	1	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	7	128852230	128852230	C	T	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	missense	c.2302	p.P768S	0.996	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	58	0	0	71	18	20	-	-	-	T	128852230	C	T	128852230	3	4	492	1	0	0	0	0	1	0	0	0	14889	739	26	4	2348	4	SMO	7	128852230	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	38618679	128852230	30286433	16	45456										
ANXA13	0	genome.wustl.edu	37	chr8	124693590	124693590	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gaactttgctttgatcccctGaaggtccacctgtagaaaaa	8	10	0	3			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	8	124693590	124693590	G	A	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	nonsense	c.964	p.Q322*	0.471	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	248	0	0	431	150	25.82	-	-	-	A	124693590	G	A	124693590	4	1	492	1	0	0	0	0	0	1	0	0	716	1299	45	2	113	2	ANXA13	8	124693590	Nonsense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09		124693590	21670432	17	45457										
PRUNE2	0	genome.wustl.edu	37	chr9	79324439	79324439	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tcctcaaaaaggttccaggaAtctaccttttcatatacctt	4	11	3	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	9	79324439	79324439	A	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1674	p.D558E	0.276	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	226	0	0	73	184	71.6	-	-	-	T	79324439	A	T	79324439	3	4	492	1	0	0	0	0	1	0	0	0	12721	98	4	5	6563	5	PRUNE2	9	79324439	Missense_Mutation	SNP	A	TCGA-BH-A0B8-01A-21W-A071-09		79324439	61888992	18	45458										
DHX32	0	genome.wustl.edu	37	chr10	127530357	127530357	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	cacttcatctacacagtcaaAttcacaggacgctaagatag	6	11	4	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	10	127530357	127530357	A	T	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	missense	c.1498	p.F500I	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	63	0	0	65	43	39.81	-	-	-	T	127530357	A	T	127530357	3	4	492	1	0	0	0	0	1	0	0	0	4541	101	4	5	753	5	DHX32	10	127530357	Missense_Mutation	SNP	A	TCGA-BH-A0B8-01A-21W-A071-09		127530357	8004390	19	45459										
MUC5B	0	genome.wustl.edu	37	chr11	1268931	1268931	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	atccgtgcggccggaggggcAgtctgtgagcagcccctggg	18	12	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	11	1268931	1268931	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10830	p.A3610	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	9	0	0	1	4	80	-	-	-	C	1268931	A	C	1268931	2	2	492	1	0	0	0	0	0	0	0	1	10051	175	7	5		5	MUC5B	11	1268931	Silent	SNP	A	TCGA-BH-A0B8-01A-21W-A071-09		1268931	133737585	20	45460										
MUC5B	0	genome.wustl.edu	37	chr11	1270250	1270250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	catcacagagccttccacggGgacttcccacaccccagcag	8	18	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	11	1270250	1270250	G	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.12149	p.G4050V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0	5	3	37.5	-	-	-	T	1270250	G	T	1270250	3	4	492	1	0	0	0	0	1	0	0	0	10051	1232	43	4	12271	4	MUC5B	11	1270250	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09	1319	1270250	133736266	21	45461										
ST14	0	genome.wustl.edu	37	chr11	130078396	130078396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tgcaggagcgcaggctcaagCgcatcatctcccaccccttc	9	17	3	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	11	130078396	130078396	C	T	SNP	ST14	ENST00000278742	human	ensembl	69_37n	1	known	missense	c.2086	p.R696C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_CUB,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ST14	HGNC	ENSG00000149418	32	0	0	24	5	17.24	-	-	-	T	130078396	C	T	130078396	3	4	492	1	0	0	0	0	1	0	0	0	15302	768	27	1	2152	1	ST14	11	130078396	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	128808146	130078396	4928120	22	45462										
STAT2	0	genome.wustl.edu	37	chr12	56750353	56750353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tgcagcatttcccactgcgcCatttgggctctgcgtcagaa	10	13	2	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	56750353	56750353	C	T	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	superfamily_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	130	0	0	192	32	14.29	-	-	-	T	56750353	C	T	56750353	3	4	492	1	0	0	0	0	1	0	0	0	15356	594	21	4	2644	4	STAT2	12	56750353	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09		56750353	77101542	23	45463										
STAT6	0	genome.wustl.edu	37	chr12	57499326	57499326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tcttgggctcaagctccccaCcagccgcccctacctcctgc	7	21	2	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	57499326	57499326	C	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.737	p.G246D	0.993	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	26	0	0	51	8	13.56	-	-	-	T	57499326	C	T	57499326	3	4	492	1	0	0	0	0	1	0	0	0	15361	507	18	4	1866	4	STAT6	12	57499326	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	748973	57499326	76352569	24	45464										
SRGAP1	0	genome.wustl.edu	37	chr12	64474111	64474111	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gtaatctcatcacaaaacttCaagccaaacatgacttgctg	5	11	3	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	64474111	64474111	C	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.1369	p.Q457K	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	105	0	0	102	69	40.35	-	-	-	A	64474111	C	A	64474111	3	1	492	1	0	0	0	0	1	0	0	0	15236	827	29	2	1407	2	SRGAP1	12	64474111	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	6974785	64474111	69377784	25	45465										
POP5	0	genome.wustl.edu	37	chr12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ggcggctgcgccgaaagttcCgtgcaccctggcgatcgtgt	15	13	0	0			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	121018957	121018957	C	A	SNP	POP5	ENST00000357500	human	ensembl	69_37n	-1	known	nonsense	c.124	p.G42*	1.000	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	39	0	0	41	21	33.87	-	-	-	A	121018957	C	A	121018957	4	1	492	1	0	0	0	0	0	1	0	0	12327	661	23	3	383	3	POP5	12	121018957	Nonsense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	56544846	121018957	12832938	26	45466										
CLN3	0	genome.wustl.edu	37	chr16	28498857	28498858	+	Frame_Shift_Ins	INS	-	-	G													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	aatcccactgacgagaacccINSgggggctgagggggtgagaa							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	16	28498857	28498858	-	G	INS	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	frame_shift_ins	c.380_379	p.R127fs	1.000:1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	31	0	0	27	8	22.86	-	-	-	G	28498858	-	G	28498857	7	5	492	1	0	1	1	0	0	0	0	0	3573	652	23	0	976	0	CLN3	16	28498857	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09		28498857	61855896	27	45467										
CBLN1	0	genome.wustl.edu	37	chr16	49315311	49315312	+	Frame_Shift_Ins	INS	-	-	A													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	cgatgggctccgtctcattcINStgcccgcgggccgggcccgc							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	16	49315311	49315312	-	A	INS	CBLN1	ENST00000219197	human	ensembl	69_37n	-1	known	frame_shift_ins	c.66_65	p.Q22fs	1.000:1.000	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924	12	0	0	9	11	55	-	-	-	A	49315312	-	A	49315311	7	5	492	1	0	1	1	0	0	0	0	0	2729	912	32	0	527	0	CBLN1	16	49315311	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09	20816454	49315311	41039442	28	45468										
STAT5B	0	genome.wustl.edu	37	chr17	40371806	40371806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	cctgcttctgctggagggccGtctcccggctcagacgctcc	12	17	3	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	17	40371806	40371806	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.605	p.T202M	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	27	0	0	17	15	46.88	-	-	-	A	40371806	G	A	40371806	3	1	492	1	0	0	0	0	1	0	0	0	15360	1145	40	1	1814	1	STAT5B	17	40371806	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09		40371806	40823404	29	45469										
KIAA0195	0	genome.wustl.edu	37	chr17	73490997	73490997	+	Frame_Shift_Del	DEL	C	C	-													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	gtgtttgcagaaaaaatgggCctggagacaggctggaactg							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	17	73490997	73490997	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	frame_shift_del	c.2610	p.L871fs	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	36	0	0	66	56	45.9	-	-	-	-	73490997	C	-	73490997	7	5	492	1	0	1	0	1	0	0	0	0	8212	726	26	0	2684	0	KIAA0195	17	73490997	Frame_Shift_Del	DEL	C	TCGA-BH-A0B8-01A-21W-A071-09	33119191	73490997	7704213	30	45470										
HDGFRP2	0	genome.wustl.edu	37	chr19	4499592	4499594	+	In_Frame_Del	DEL	AGT	AGT	-													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	aagatcgaggcggtgcagaaAgtgaacaaggctgggatgga							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	4499592	4499594	AGT	-	DEL	HDGFRP2	ENST00000301284	human	ensembl	69_37n	1	known	in_frame_del	c.1680_1682	p.V561in_frame_del	0.727:0.733:0.021	pfam_LEDGF	pfam_LEDGF,pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	CTB-50L17.10	Clone_based_vega_gene	ENSG00000167674	15	0	0	10	8	44.44	-	-	-	-	4499594	AGT	-	4499592	7	5	492	1	0	1	0	1	0	0	0	0	7071	69	3	0	1734	0	HDGFRP2	19	4499592	In_Frame_Del	DEL	AGT	TCGA-BH-A0B8-01A-21W-A071-09		4499592	54629391	31	45471										
SMARCA4	0	genome.wustl.edu	37	chr19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	atcctggagcacgaggagcaGgatgaggtgagcccagcacc							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	11144187	11144188	GG	-	DEL	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	45	0	0	35	45	56.25	-	-	-	-	11144188	GG	-	11144187	7	5	492	1	0	1	0	1	0	0	0	0	14859	991	35	0	3866	0	SMARCA4	19	11144187	Frame_Shift_Del	DEL	GG	TCGA-BH-A0B8-01A-21W-A071-09	6644595	11144187	47984796	32	45472	374	2								
SMARCA4	0	genome.wustl.edu	37	chr19	11144189	11144190	+	Frame_Shift_Ins	INS	-	-	C													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ctggagcacgaggagcaggaINStgaggtgagcccagcaccgg							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	11144189	11144190	-	C	INS	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	frame_shift_ins	c.3770_3771	p.E1258fs	1.000:0.906	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	44	0	0	37	45	54.88	-	-	-	C	11144190	-	C	11144189	7	5	492	1	0	1	1	0	0	0	0	0	14859	333	12	0	3868	0	SMARCA4	19	11144189	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09	2	11144189	47984794	33	45473	374	2								
ZNF527	0	genome.wustl.edu	37	chr19	37879753	37879753	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ttactcaacatcagaccactCattttggaaaattaccccat	3	12	3	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	37879753	37879753	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.802	p.H268Y	0.948	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	397	0	0	398	260	39.51	-	-	-	T	37879753	C	T	37879753	3	4	492	1	0	0	0	0	1	0	0	0	18064	826	29	2	816	2	ZNF527	19	37879753	Missense_Mutation	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	26735564	37879753	21249230	34	45474										
DEDD2	0	genome.wustl.edu	37	chr19	42713899	42713900	+	Frame_Shift_Ins	INS	-	-	GC													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tctggcgggctctgactgctINSgctggggtgcggctggggcc							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	42713899	42713900	-	GC	INS	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.542_541	p.Q181fs	1.000:1.000	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	91	0	0	103	79	43.41	-	-	-	GC	42713900	-	GC	42713899	7	5	492	1	0	1	1	0	0	0	0	0	4416	1580	55	0	446	0	DEDD2	19	42713899	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09	4834146	42713899	16415084	35	45475	375	2								
DEDD2	0	genome.wustl.edu	37	chr19	42713903	42713903	+	Frame_Shift_Del	DEL	G	G	-													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ggcgggctctgactgctgctGgggtgcggctggggcccctc							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	42713903	42713903	G	-	DEL	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_del	c.538	p.Q180fs	0.998	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	86	0	0	86	76	46.91	-	-	-	-	42713903	G	-	42713903	7	5	492	1	0	1	0	1	0	0	0	0	4416	1357	47	0	450	0	DEDD2	19	42713903	Frame_Shift_Del	DEL	G	TCGA-BH-A0B8-01A-21W-A071-09	4	42713903	16415080	36	45476	375	2								
ZFP112	0	genome.wustl.edu	37	chr19	44834085	44834085	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tccatcttttgttgattcttCcttcctataaggataaagag	6	8	2	2			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	44834085	44834085	C	T	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	silent	c.294	p.R98	0.875	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	42	0	0	59	45	43.27	-	-	-	T	44834085	C	T	44834085	2	4	492	1	0	0	0	0	0	0	0	1	17734	854	30	2		2	ZFP112	19	44834085	Silent	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	2120182	44834085	14294898	37	45477										
EPN1	0	genome.wustl.edu	37	chr19	56203361	56203361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	accctcagttgacccttgggGtgggaccccagcccctgcag	12	16	1	1			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	56203361	56203361	G	A	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	missense	c.1262	p.G421D	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	10	0	0	7	9	56.25	-	-	-	A	56203361	G	A	56203361	3	1	492	1	0	0	0	0	1	0	0	0	5222	1261	44	4	1367	4	EPN1	19	56203361	Missense_Mutation	SNP	G	TCGA-BH-A0B8-01A-21W-A071-09	11369276	56203361	2925622	38	45478										
ESX1	0	genome.wustl.edu	37	chrX	103494943	103494944	+	Frame_Shift_Ins	INS	-	-	T													0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	tgcataataactgttgatgaINScaggggcccatgtgatgtgt							TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	X	103494943	103494944	-	T	INS	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1187_1186	p.V396fs	0.004:0.104	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	59	0	0	46	6	11.54	-	-	-	T	103494944	-	T	103494943	7	5	492	1	0	1	1	0	0	0	0	0	5300	275	10	0	37	0	ESX1	23	103494943	Frame_Shift_Ins	INS	-	TCGA-BH-A0B8-01A-21W-A071-09		103494943	51775617	39	45479										
RHOXF2	0	genome.wustl.edu	37	chrX	119293081	119293081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0789473684210526	3	0.682452312550565	1.45022624434389	0	1.54086538461538	0.142857142857143	0.62934362934363	0	ggcggagaagaaaaagatggCggcggcgccggagttcctgg	19	8	0	3			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	X	119293081	119293081	C	T	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	1	known	silent	c.240	p.G80	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	80	0	0	63	11	14.67	-	-	-	T	119293081	C	T	119293081	2	4	492	1	0	0	0	0	0	0	0	1	13432	755	27	1		1	RHOXF2	23	119293081	Silent	SNP	C	TCGA-BH-A0B8-01A-21W-A071-09	15798138	119293081	35977479	40	45480										
CC2D1B	0	genome.wustl.edu	37	chr1	52824769	52824769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gggcctggatgcccgcctcgCggtacttgttcagcctctgc	13	15	2	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	1	52824769	52824769	C	T	SNP	CC2D1B	ENST00000371586	human	ensembl	69_37n	-1	known	missense	c.1187	p.R396H	0.248	smart_DM14	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1B	HGNC	ENSG00000154222	28	0	0	50	8	13.79	-	-	-	T	52824769	C	T	52824769	3	4	493	1	0	0	0	0	1	0	0	0	2752	768	27	1	1445	1	CC2D1B	1	52824769	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09		52824769	196425852	1	45481										
KANK4	0	genome.wustl.edu	37	chr1	62740107	62740107	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tcctggaccagctctggaatCcgagttgatgctcgtgggct	13	11	1	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	1	62740107	62740107	C	T	SNP	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	silent	c.669	p.R223	0.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	37	0	0	45	13	22.41	-	-	-	T	62740107	C	T	62740107	2	4	493	1	0	0	0	0	0	0	0	1	8033	842	30	2		2	KANK4	1	62740107	Silent	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	9915338	62740107	186510514	2	45482										
LRIG2	0	genome.wustl.edu	37	chr1	113616247	113616248	+	Frame_Shift_Ins	INS	-	-	C													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gggcgctgtcgggcttgctgINSccccccgacaccgctatcct							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	1	113616247	113616248	-	C	INS	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	frame_shift_ins	c.219_220	p.D75fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	21	0	0	29	4	12.12	-	-	-	C	113616248	-	C	113616247	7	5	493	1	0	1	1	0	0	0	0	0	9011	1306	46	0	221	0	LRIG2	1	113616247	Frame_Shift_Ins	INS	-	TCGA-BH-A0B9-01A-11W-A071-09	50876140	113616247	135634374	3	45483										
ECM1	0	genome.wustl.edu	37	chr1	150485271	150485271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tgccatttccagaacaggccTgctgtgcagaggaggaggtg	15	9	0	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	1	150485271	150485271	T	C	SNP	ECM1	ENST00000369049	human	ensembl	69_37n	1	known	missense	c.1456	p.C486R	1.000	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369	160	0	0	269	81	23.14	-	-	-	C	150485271	T	C	150485271	3	2	493	1	0	0	0	0	1	0	0	0	4932	1580	55	5	1409	5	ECM1	1	150485271	Missense_Mutation	SNP	T	TCGA-BH-A0B9-01A-11W-A071-09	36869024	150485271	98765350	4	45484										
CYP26B1	0	genome.wustl.edu	37	chr2	72371201	72371201	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gcgggtgctgcgaggccactCggtgctcacgaggtggtgct	18	11	1	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	2	72371201	72371201	C	A	SNP	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	nonsense	c.346	p.E116*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	16	0	0	7	7	50	-	-	-	A	72371201	C	A	72371201	4	1	493	1	0	0	0	0	0	1	0	0	4187	893	31	3	1212	3	CYP26B1	2	72371201	Nonsense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09		72371201	170828172	5	45485										
SLC22A14	0	genome.wustl.edu	37	chr3	38348770	38348771	+	Frame_Shift_Del	DEL	CG	CG	-													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cttggtatgtggcatggagaCgaagaaggacactgcacaga							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	3	38348770	38348771	CG	-	DEL	SLC22A14	ENST00000273173	human	ensembl	69_37n	1	known	frame_shift_del	c.542_543	p.T181fs	0.000:0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	54	0	0	48	7	12.73	-	-	-	-	38348771	CG	-	38348770	7	5	493	1	0	1	0	1	0	0	0	0	14534	536	19	0	548	0	SLC22A14	3	38348770	Frame_Shift_Del	DEL	CG	TCGA-BH-A0B9-01A-11W-A071-09		38348770	159673660	6	45486										
SGCD	0	genome.wustl.edu	37	chr5	156074477	156074477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ttctgttttgtttacaggagCggagggcacagtgttcccta	12	8	1	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	5	156074477	156074477	C	T	SNP	SGCD	ENST00000337851	human	ensembl	69_37n	1	known	missense	c.506	p.A169V	0.999	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	14	0	0	15	7	31.82	-	-	-	T	156074477	C	T	156074477	3	4	493	1	0	0	0	0	1	0	0	0	14289	768	27	1	528	1	SGCD	5	156074477	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09		156074477	24840783	7	45487										
NOTCH4	0	genome.wustl.edu	37	chr6	32180644	32180644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cagtggggcagaggcagcggGgaccctgagggctgtcctgg	20	10	0	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	6	32180644	32180644	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.2483	p.P828L	0.936	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	22	0	0	22	19	46.34	-	-	-	A	32180644	G	A	32180644	3	1	493	1	0	0	0	0	1	0	0	0	10623	1232	43	4	3588	4	NOTCH4	6	32180644	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		32180644	138934423	8	45488										
LPA	0	genome.wustl.edu	37	chr6	161022000	161022000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cagaataacattcggagggaCgaaggcagtccattctgcat	11	9	1	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	6	161022000	161022000	C	G	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.3076	p.V1026L	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	224	0	0	171	69	28.75	-	-	-	G	161022000	C	G	161022000	3	3	493	1	0	0	0	0	1	0	0	0	8969	536	19	3	3130	3	LPA	6	161022000	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	128841356	161022000	10093067	9	45489										
KIAA0895	0	genome.wustl.edu	37	chr7	36366445	36366445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ctaagtgttccatatatcggCcatggtcctgcaggaaatga	10	9	0	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	7	36366445	36366445	C	T	SNP	KIAA0895	ENST00000297063	human	ensembl	69_37n	-1	known	missense	c.1487	p.G496D	0.003	pfam_DUF1704	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	151	0	0	153	51	25	-	-	-	T	36366445	C	T	36366445	3	4	493	1	0	0	0	0	1	0	0	0	8249	739	26	4	79	4	KIAA0895	7	36366445	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09		36366445	122772218	10	45490										
ZNF655	0	genome.wustl.edu	37	chr7	99158245	99158245	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gtccagtttcagtctttggaGacccagtctgagtgtctgtc	11	10	4	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	7	99158245	99158245	G	A	SNP	ZNF655	ENST00000424881	human	ensembl	69_37n	1	known	silent	c.63	p.E21	0.315	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343	52	0	0	67	33	33	-	-	-	A	99158245	G	A	99158245	2	1	493	1	0	0	0	0	0	0	0	1	18164	933	33	2		2	ZNF655	7	99158245	Silent	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	62791800	99158245	59980418	11	45491										
XKR4	0	genome.wustl.edu	37	chr8	56435863	56435863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tcacagcggcagcttccctcGtgtccctggcctgggccttg	12	16	1	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	8	56435863	56435863	G	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1030	p.V344M	0.999	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	86	0	0	119	45	27.44	-	-	-	A	56435863	G	A	56435863	3	1	493	1	0	0	0	0	1	0	0	0	17530	1145	40	1	1040	1	XKR4	8	56435863	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		56435863	89928159	12	45492										
ZFPM2	0	genome.wustl.edu	37	chr8	106814408	106814408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	acattaccttcagccggcacGaaacatacatggtccacaaa	6	13	1	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	8	106814408	106814408	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.2098	p.E700K	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	88	0	0	91	33	26.61	-	-	-	A	106814408	G	A	106814408	3	1	493	1	0	0	0	0	1	0	0	0	17754	1059	37	1	2128	1	ZFPM2	8	106814408	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	50378545	106814408	39549614	13	45493										
RABGAP1	0	genome.wustl.edu	37	chr9	125863868	125863868	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	aaagtggatgactgtgagcgGtgccgggaatttttcaacaa	13	6	1	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	9	125863868	125863868	G	A	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	silent	c.2913	p.R971	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	78	0	0	67	14	17.28	-	-	-	A	125863868	G	A	125863868	2	1	493	1	0	0	0	0	0	0	0	1	13047	1248	44	4		4	RABGAP1	9	125863868	Silent	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		125863868	15349563	14	45494										
SIPA1	0	genome.wustl.edu	37	chr11	65413699	65413701	+	In_Frame_Del	DEL	GGA	GGA	-													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	atccaacccctagctcctccGgaagcgccacattggcaacg							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	11	65413699	65413701	GGA	-	DEL	SIPA1	ENST00000394224	human	ensembl	69_37n	1	known	in_frame_del	c.1271_1273	p.RK424in_frame_delQ	1.000:1.000:1.000	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1	HGNC	ENSG00000213445	68	0	0	67	30	29.7	-	-	-	-	65413701	GGA	-	65413699	7	5	493	1	0	1	0	1	0	0	0	0	14417	1116	39	0	1293	0	SIPA1	11	65413699	In_Frame_Del	DEL	GGA	TCGA-BH-A0B9-01A-11W-A071-09		65413699	69592817	15	45495										
REXO2	0	genome.wustl.edu	37	chr11	114320615	114320615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	caaagagcttcagttttaccGaaataacatcttcaagaaaa	5	8	3	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	11	114320615	114320615	G	A	SNP	REXO2	ENST00000265881	human	ensembl	69_37n	1	known	missense	c.632	p.R211Q	1.000	superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO2	HGNC	ENSG00000076043	207	0	0	197	86	30.39	-	-	-	A	114320615	G	A	114320615	3	1	493	1	0	0	0	0	1	0	0	0	13325	1058	37	1	658	1	REXO2	11	114320615	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	48906916	114320615	20685901	16	45496										
TAS2R43	0	genome.wustl.edu	37	chr12	11244488	11244488	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	agtgaagaaaaataaagttgGagaaattggcaatcttgagc	11	3	1	4			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	12	11244488	11244488	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	missense	c.341	p.S114C	0.139	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	337	0	0	601	216	26.37	-	-	-	C	11244488	G	C	11244488	3	2	493	1	0	0	0	0	1	0	0	0	15673	1174	41	2	592	2	TAS2R43	12	11244488	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		11244488	122607407	17	45497										
MLL2	0	genome.wustl.edu	37	chr12	49436351	49436351	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cagagacaccaacctagaatCcaggaacggggactggcaga	12	11	0	3			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	12	49436351	49436351	C	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.5860	p.D1954H	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	57	0	0	80	26	24.53	-	-	-	G	49436351	C	G	49436351	3	3	493	1	0	0	0	0	1	0	0	0	9692	855	30	2	10865	2	MLL2	12	49436351	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	38191863	49436351	84415544	18	45498										
USP12	0	genome.wustl.edu	37	chr13	27679970	27679970	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gagatctgctaagcatgtaaGaaggctctcctttttcctag	9	9	2	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	13	27679970	27679970	G	T	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.241	p.L81I	0.998	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	138	0	0	233	57	19.66	-	-	-	T	27679970	G	T	27679970	3	4	493	1	0	0	0	0	1	0	0	0	17140	942	33	2	899	2	USP12	13	27679970	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		27679970	87489908	19	45499										
SCAMP2	0	genome.wustl.edu	37	chr15	75146427	75146427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tggctgtgaggacccagggaGttgggtgacaggaactgttg	18	6	0	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	15	75146427	75146427	G	A	SNP	SCAMP2	ENST00000268099	human	ensembl	69_37n	-1	known	missense	c.160	p.L54F	0.334	NULL	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497	14	0	0	13	12	48	-	-	-	A	75146427	G	A	75146427	3	1	493	1	0	0	0	0	1	0	0	0	13958	1029	36	4	857	4	SCAMP2	15	75146427	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		75146427	27384965	20	45500										
IQGAP1	0	genome.wustl.edu	37	chr15	91019954	91019954	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	aaggaacagttgtctgatatGatgatgataaataaacagaa	9	3	1	5			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	15	91019954	91019954	G	T	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	missense	c.2844	p.M948I	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	282	0	0	93	139	59.91	-	-	-	T	91019954	G	T	91019954	3	4	493	1	0	0	0	0	1	0	0	0	7868	1290	45	2	2938	2	IQGAP1	15	91019954	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	15873527	91019954	11511438	21	45501										
TP53	0	genome.wustl.edu	37	chr17	7577106	7577106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tgtgcgccggtctctcccagGacaggcacaaacacgcacct	10	16	1	0			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	17	7577106	7577106	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.832	p.P278T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	55	0	0	40	39	49.37	-	-	-	T	7577106	G	T	7577106	3	4	493	1	0	0	0	0	1	0	0	0	16477	1174	41	2	454	2	TP53	17	7577106	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		7577106	73618104	22	45502										
USP36	0	genome.wustl.edu	37	chr17	76799860	76799861	+	Frame_Shift_Ins	INS	-	-	G													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cctcttctcagaggggctctINSgggggggctcactggcctct							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	17	76799860	76799861	-	G	INS	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2417_2416	p.Q806fs	0.000:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	14	0	0	29	5	14.71	-	-	-	G	76799861	-	G	76799860	7	5	493	1	0	1	1	0	0	0	0	0	17164	1580	55	0	974	0	USP36	17	76799860	Frame_Shift_Ins	INS	-	TCGA-BH-A0B9-01A-11W-A071-09	69222754	76799860	4395350	23	45503										
RNF213	0	genome.wustl.edu	37	chr17	78321232	78321232	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ctcagaaggtgccgggtggaGagcaggaagatgctgagtcc	17	8	1	4			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	17	78321232	78321232	G	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.9097	p.E3033Q	0.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	43	0	0	26	32	55.17	-	-	-	C	78321232	G	C	78321232	3	2	493	1	0	0	0	0	1	0	0	0	13563	943	33	2	9526	2	RNF213	17	78321232	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	1521372	78321232	2873978	24	45504										
MYO5B	0	genome.wustl.edu	37	chr18	47463624	47463624	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ccggggctgacctggtggccAacggttttcttgtgctcctt	13	12	1	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	18	47463624	47463624	A	G	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	silent	c.1896	p.V632	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	191	0	0	231	59	20.27	-	-	-	G	47463624	A	G	47463624	2	3	493	1	0	0	0	0	0	0	0	1	10151	117	5	5		5	MYO5B	18	47463624	Silent	SNP	A	TCGA-BH-A0B9-01A-11W-A071-09		47463624	30613624	25	45505										
NEDD4L	0	genome.wustl.edu	37	chr18	56010162	56010162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ccaaggactcacccgtacgtCgggctgtgaaagacaccctt	10	14	1	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	18	56010162	56010162	C	G	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.1402	p.R468G	0.997	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	127	0	0	123	28	18.54	-	-	-	G	56010162	C	G	56010162	3	3	493	1	0	0	0	0	1	0	0	0	10383	875	31	3	1492	3	NEDD4L	18	56010162	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	8546538	56010162	22067086	26	45506										
NOTCH3	0	genome.wustl.edu	37	chr19	15271757	15271758	+	Frame_Shift_Del	DEL	TG	TG	-													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gcgggcctttggggggctgcTgtgtgccccagccgccgggt							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	19	15271757	15271758	TG	-	DEL	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	frame_shift_del	c.6682_6681	p.H2227fs	0.005:0.002	pfam_DUF3454_notch,pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	14	0	0	11	4	26.67	-	-	-	-	15271758	TG	-	15271757	7	5	493	1	0	1	0	1	0	0	0	0	10622	1580	55	0	287	0	NOTCH3	19	15271757	Frame_Shift_Del	DEL	TG	TCGA-BH-A0B9-01A-11W-A071-09		15271757	43857226	27	45507										
RYR1	0	genome.wustl.edu	37	chr19	39018962	39018962	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ccagaccgagcacccttacaAgtctaagaaggccgtgtggc	11	13	1	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	19	39018962	39018962	A	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.10841	p.K3614R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	46	0	0	37	23	38.33	-	-	-	G	39018962	A	G	39018962	3	3	493	1	0	0	0	0	1	0	0	0	13854	72	3	5	11135	5	RYR1	19	39018962	Missense_Mutation	SNP	A	TCGA-BH-A0B9-01A-11W-A071-09	23747205	39018962	20110021	28	45508										
GYS1	0	genome.wustl.edu	37	chr19	49489210	49489210	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ctacaggcagtcgccgggcaCgacacaggcagagtccaacg	13	14	0	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	19	49489210	49489210	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.575	p.R192H	0.994	pfam_Glycogen_synth,pfam_Starch_synth_cat_dom	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	30	0	0	28	15	34.88	-	-	-	T	49489210	C	T	49489210	3	4	493	1	0	0	0	0	1	0	0	0	6963	536	19	1	1690	1	GYS1	19	49489210	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	10470248	49489210	9639773	29	45509										
MYH14	0	genome.wustl.edu	37	chr19	50750310	50750310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ctgggggtgacggatttctcCcgagccttgctcacccctcg	12	15	2	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	19	50750310	50750310	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	silent	c.1260	p.S420	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	13	0	0	11	12	52.17	-	-	-	T	50750310	C	T	50750310	2	4	493	1	0	0	0	0	0	0	0	1	10105	610	22	4		4	MYH14	19	50750310	Silent	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	1261100	50750310	8378673	30	45510										
ASXL1	0	genome.wustl.edu	37	chr20	31023102	31023102	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	gcctgcagaacagagcatttGatgacgaattagggcttggt	13	7	0	4			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	20	31023102	31023102	G	C	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.2587	p.D863H	0.035	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	178	0	0	486	70	12.57	-	-	-	C	31023102	G	C	31023102	3	2	493	1	0	0	0	0	1	0	0	0	1070	1290	45	2	2643	2	ASXL1	20	31023102	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		31023102	32002418	31	45511			1	80		3	3	1007	G		6.831084e-07
ASXL1	0	genome.wustl.edu	37	chr20	31023531	31023531	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	cggatacagcctctgactttGaaggtcacctcacggaggac	11	12	3	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	20	31023531	31023531	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.3016	p.E1006K	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	92	0	0	221	37	14.34	-	-	-	A	31023531	G	A	31023531	3	1	493	1	0	0	0	0	1	0	0	0	1070	1291	45	2	3072	2	ASXL1	20	31023531	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	429	31023531	32001989	32	45512			1	80		3	3	1007	G		6.831084e-07
ASXL1	0	genome.wustl.edu	37	chr20	31024108	31024108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tgaggccacccaggctcctgGagcaccccaaaagaattgca	10	14	0	2			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	20	31024108	31024108	G	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.3593	p.G1198V	0.056	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	92	0	0	145	20	12.12	-	-	-	T	31024108	G	T	31024108	3	4	493	1	0	0	0	0	1	0	0	0	1070	1174	41	2	3649	2	ASXL1	20	31024108	Missense_Mutation	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09	577	31024108	32001412	33	45513			1	80		3	3	1007	G		6.831084e-07
PSMA7	0	genome.wustl.edu	37	chr20	60714888	60714888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	tactccacagtgaccgggtcCtccacagtcagccggtggct	11	15	1	1			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	20	60714888	60714888	C	T	SNP	PSMA7	ENST00000442551	human	ensembl	69_37n	-1	known	missense	c.74	p.R25K	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMA7	HGNC	ENSG00000101182	13	0	0	20	10	33.33	-	-	-	T	60714888	C	T	60714888	3	4	493	1	0	0	0	0	1	0	0	0	12752	680	24	4	469	4	PSMA7	20	60714888	Missense_Mutation	SNP	C	TCGA-BH-A0B9-01A-11W-A071-09	29690780	60714888	2310632	34	45514										
TMPRSS15	0	genome.wustl.edu	37	chr21	19666646	19666646	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ctgacgagagatgcgccgcaGagcagtcggccgccataata	13	12	0	3			TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	21	19666646	19666646	G	C	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	silent	c.2427	p.L809	0.102	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	80	0	0	68	36	34.62	-	-	-	C	19666646	G	C	19666646	2	2	493	1	0	0	0	0	0	0	0	1	16341	929	33	2		2	TMPRSS15	21	19666646	Silent	SNP	G	TCGA-BH-A0B9-01A-11W-A071-09		19666646	28463249	35	45515										
WWC3	0	genome.wustl.edu	37	chrX	10102551	10102551	+	Frame_Shift_Del	DEL	C	C	-													0.138888888888889	5	0.356030377341679	1.86473165388828	3.51635111876076	1.09397590361446	1	1	0	ggagcggcccagccgccgggCccgagggtcgccttttgttc							TCGA-BH-A0B9-01A-11W-A071-09	TCGA-BH-A0B9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57595bb-7953-4611-b0d1-3c2c40feb3b9	02613b8d-b01c-401a-a0be-71f258dea92a	X	10102551	10102551	C	-	DEL	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	frame_shift_del	c.2678	p.R894fs	0.075	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	176	0	0	109	71	36.41	-	-	-	-	10102551	C	-	10102551	7	5	493	1	0	1	0	1	0	0	0	0	17510	739	26	0	2748	0	WWC3	23	10102551	Frame_Shift_Del	DEL	C	TCGA-BH-A0B9-01A-11W-A071-09		10102551	145168009	36	45516										
POGZ	0	genome.wustl.edu	37	chr1	151377585	151377585	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gacagtccccaatgacacctAgcacttcacccagccagaca	6	17	1	2			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	1	151377585	151377585	A	G	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.3926	p.L1309P	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	329	0	0	312	115	26.87	-	-	-	G	151377585	A	G	151377585	3	3	494	1	0	0	0	0	1	0	0	0	12260	420	15	5	310	5	POGZ	1	151377585	Missense_Mutation	SNP	A	TCGA-BH-A0BA-01A-11W-A071-09		151377585	97873036	1	45517										
LCE2B	0	genome.wustl.edu	37	chr1	152659368	152659368	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gccagccccctcccaagtgtCctcccaagtgtaccccaaaa	6	19	0	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	1	152659368	152659368	C	A	SNP	LCE2B	ENST00000368780	human	ensembl	69_37n	1	known	missense	c.49	p.P17T	0.996	NULL	NULL	-	no_errors	LCE2B	HGNC	ENSG00000159455	394	0	0	444	468	51.2	-	-	-	A	152659368	C	A	152659368	3	1	494	1	0	0	0	0	1	0	0	0	8720	855	30	2	51	2	LCE2B	1	152659368	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	1281783	152659368	96591253	2	45518										
KIF21B	0	genome.wustl.edu	37	chr1	200969636	200969636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gctgcccccgaaggccggggCggctggagaagcacccaggg	18	14	0	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	1	200969636	200969636	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.1567	p.A523T	0.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	47	0	0	35	23	38.98	-	-	-	T	200969636	C	T	200969636	3	4	494	1	0	0	0	0	1	0	0	0	8341	768	27	1	3403	1	KIF21B	1	200969636	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	48310268	200969636	48280985	3	45519										
AVPR1B	0	genome.wustl.edu	37	chr1	206224520	206224520	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	caatgccacaacaccctggcTgggccgggatgaggagctgg	15	12	0	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	1	206224520	206224520	T	A	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	missense	c.80	p.L27Q	0.963	prints_Vprs_rcpt_V1B	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	203	0	0	206	76	26.76	-	-	-	A	206224520	T	A	206224520	3	1	494	1	0	0	0	0	1	0	0	0	1236	1580	55	5	82	5	AVPR1B	1	206224520	Missense_Mutation	SNP	T	TCGA-BH-A0BA-01A-11W-A071-09	5254884	206224520	43026101	4	45520										
RGS7	0	genome.wustl.edu	37	chr1	240975222	240975222	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	aagcaatgtgttttaccttaAattttccgagctgaattctg	7	7	1	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	1	240975222	240975222	A	C	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	missense	c.1078	p.L360V	0.999	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	120	0	0	222	84	27.45	-	-	-	C	240975222	A	C	240975222	3	2	494	1	0	0	0	0	1	0	0	0	13394	11	1	5	405	5	RGS7	1	240975222	Missense_Mutation	SNP	A	TCGA-BH-A0BA-01A-11W-A071-09	34750702	240975222	8275399	5	45521										
POTEF	0	genome.wustl.edu	37	chr2	130831831	130831831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gtccacctacaagcatttgcGgtggacaatggaggggcctg	14	10	0	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	2	130831831	130831831	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.3214	p.R1072C	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	134	0	0	82	90	52.33	-	-	-	A	130831831	G	A	130831831	3	1	494	1	0	0	0	0	1	0	0	0	12339	1116	39	1	17	1	POTEF	2	130831831	Missense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		130831831	112367542	6	45522										
GPR39	0	genome.wustl.edu	37	chr2	133175212	133175212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cgctccagcacccgccaccaCgagcagcccgagacctccaa	8	21	0	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	931205be-0a3e-4a3a-a77b-0583f104173f	2	133175212	133175212	C	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	silent	c.597	p.H199	0.223	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	50	0	0	43	10	18.87	-	-	-	T	133175212	C	T	133175212	2	4	494	1	0	0	0	0	0	0	0	1	6743	535	19	1		1	GPR39	2	133175212	Silent	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	2343381	133175212	110024161	7	45523										
SESTD1	0	genome.wustl.edu	37	chr2	180047811	180047811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	acacctttagagtcaccttgGaatgctgagtaggtagtcta	10	8	2	2			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	2	180047811	180047811	G	A	SNP	SESTD1	ENST00000428443	human	ensembl	69_37n	-1	known	missense	c.160	p.P54S	1.000	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231	84	0	0	60	66	51.56	-	-	-	A	180047811	G	A	180047811	3	1	494	1	0	0	0	0	1	0	0	0	14215	1174	41	2	1994	2	SESTD1	2	180047811	Missense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09	46872599	180047811	63151562	8	45524										
VILL	0	genome.wustl.edu	37	chr3	38039827	38039827	+	Frame_Shift_Del	DEL	A	A	-													0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	acgcatgtctagcctccaggAgagaaaggctgccttcagcc							TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	3	38039827	38039827	A	-	DEL	VILL	ENST00000283713	human	ensembl	69_37n	1	known	frame_shift_del	c.914	p.E305fs	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	35	0	0	8	2	20	-	-	-	-	38039827	A	-	38039827	7	5	494	1	0	1	0	1	0	0	0	0	17262	304	11	0	944	0	VILL	3	38039827	Frame_Shift_Del	DEL	A	TCGA-BH-A0BA-01A-11W-A071-09		38039827	159982603	9	45525										
ACAD9	0	genome.wustl.edu	37	chr3	128631355	128631355	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	ccttttccttcccagatgctCcagaaaacctagatgagcag	7	13	0	4			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	3	128631355	128631355	C	G	SNP	ACAD9	ENST00000308982	human	ensembl	69_37n	1	known	missense	c.1771	p.P591A	1.000	NULL	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646	59	0	0	22	20	47.62	-	-	-	G	128631355	C	G	128631355	3	3	494	1	0	0	0	0	1	0	0	0	111	855	30	2	1841	2	ACAD9	3	128631355	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	90591528	128631355	69391075	10	45526										
EPHB1	0	genome.wustl.edu	37	chr3	134920392	134920392	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	tgctggcatgaagtacctggCtgagatgaattatgtgcatc	12	7	0	3			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	3	134920392	134920392	C	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.2207	p.A736D	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	472	0	0	351	246	41.07	-	-	-	A	134920392	C	A	134920392	3	1	494	1	0	0	0	0	1	0	0	0	5211	797	28	4	2253	4	EPHB1	3	134920392	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	6289037	134920392	63102038	11	45527										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	158	0	0	120	73	37.82	-	-	-	G	178952085	A	G	178952085	3	3	494	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0BA-01A-11W-A071-09	44031693	178952085	19070345	12	45528										
WDFY3	0	genome.wustl.edu	37	chr4	85708711	85708711	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gtagtaacatttgaagaaggTaaaacttcttctagaaaatg	8	4	2	3			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	4	85708711	85708711	T	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.3825	p.L1275F	0.969	superfamily_ConA-like_lec_gl	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	81	0	0	43	43	50	-	-	-	G	85708711	T	G	85708711	3	3	494	1	0	0	0	0	1	0	0	0	17367	1635	57	5	6939	5	WDFY3	4	85708711	Missense_Mutation	SNP	T	TCGA-BH-A0BA-01A-11W-A071-09		85708711	105445565	13	45529										
MMRN1	0	genome.wustl.edu	37	chr4	90816310	90816310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	aaccactcgggtcatgtcggCggagatagctacaactccag	11	12	1	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	4	90816310	90816310	C	T	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.188	p.A63V	0.093	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	119	0	0	78	50	39.06	-	-	-	T	90816310	C	T	90816310	3	4	494	1	0	0	0	0	1	0	0	0	9742	768	27	1	190	1	MMRN1	4	90816310	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	5107599	90816310	100337966	14	45530										
PCDHB6	0	genome.wustl.edu	37	chr5	140530408	140530408	+	Frame_Shift_Del	DEL	C	C	-													0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cgcagcgaaggcaggaagttCccggagctggtgctagacaa							TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	5	140530408	140530408	C	-	DEL	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	frame_shift_del	c.570	p.P191fs	0.025	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	225	0	0	225	75	24.75	-	-	-	-	140530408	C	-	140530408	7	5	494	1	0	1	0	1	0	0	0	0	11619	854	30	0	572	0	PCDHB6	5	140530408	Frame_Shift_Del	DEL	C	TCGA-BH-A0BA-01A-11W-A071-09		140530408	40384852	15	45531										
NT5DC1	0	genome.wustl.edu	37	chr6	116544201	116544201	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	attgtgttgcttttaggaatGattttacagacctttttgac	8	5	0	3			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	6	116544201	116544201	G	A	SNP	NT5DC1	ENST00000319550	human	ensembl	69_37n	1	known	missense	c.709	p.D237N	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_errors	NT5DC1	HGNC	ENSG00000178425	115	0	0	70	54	43.55	-	-	-	A	116544201	G	A	116544201	3	1	494	1	0	0	0	0	1	0	0	0	10763	1290	45	2	739	2	NT5DC1	6	116544201	Missense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		116544201	54570866	16	45532										
ABCA13	0	genome.wustl.edu	37	chr7	48352730	48352730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	atatagtttccagcctcagcGccttgcttgccaaagcccag	8	14	1	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	7	48352730	48352730	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.9583	p.A3195T	0.055	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	30	0	0	33	15	30.61	-	-	-	A	48352730	G	A	48352730	3	1	494	1	0	0	0	0	1	0	0	0	31	1087	38	1	9510	1	ABCA13	7	48352730	Missense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		48352730	110785933	17	45533										
GSDMC	0	genome.wustl.edu	37	chr8	130777949	130777949	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	tcgtacagcacagtattgttGatcagttcaacagcctctgt	8	10	3	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	8	130777949	130777949	G	A	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	silent	c.495	p.I165	0.001	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	142	0	0	177	75	29.64	-	-	-	A	130777949	G	A	130777949	2	1	494	1	0	0	0	0	0	0	0	1	6869	1280	45	2		2	GSDMC	8	130777949	Silent	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		130777949	15586073	18	45534										
KIAA0430	0	genome.wustl.edu	37	chr16	15692757	15692757	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	aactgaatgagatcagcagaTtggaggataacggggtctgg	15	5	2	3			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	931205be-0a3e-4a3a-a77b-0583f104173f	16	15692757	15692757	T	C	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	silent	c.4938	p.Q1646	0.191	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	25	0	0	33	43	56.58	-	-	-	C	15692757	T	C	15692757	2	2	494	1	0	0	0	0	0	0	0	1	8229	1490	52	5		5	KIAA0430	16	15692757	Silent	SNP	T	TCGA-BH-A0BA-01A-11W-A071-09		15692757	74661996	19	45535										
HS3ST4	0	genome.wustl.edu	37	chr16	26147359	26147359	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	gtgactgagaagcatttctaTttcaacaaaaccaaggggtt	9	7	2	2			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	16	26147359	26147359	T	C	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	silent	c.1161	p.Y387	0.999	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	155	0	0	109	84	43.3	-	-	-	C	26147359	T	C	26147359	2	2	494	1	0	0	0	0	0	0	0	1	7418	1500	52	5		5	HS3ST4	16	26147359	Silent	SNP	T	TCGA-BH-A0BA-01A-11W-A071-09	10454602	26147359	64207394	20	45536										
CDH1	0	genome.wustl.edu	37	chr16	68844191	68844191	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cgatcagaatgacaacaagcCcgaattcacccaggaggtct	9	12	3	2			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	16	68844191	68844191	C	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.779	p.P260H	0.996	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	223	0	0	86	84	49.41	-	-	-	A	68844191	C	A	68844191	3	1	494	1	0	0	0	0	1	0	0	0	3124	623	22	4	801	4	CDH1	16	68844191	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	42696832	68844191	21510562	21	45537										
PHF12	0	genome.wustl.edu	37	chr17	27238154	27238154	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	attgacatccataaatgctcGaagtgagttggtgaggtcca	11	7	0	3			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	17	27238154	27238154	G	A	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	nonsense	c.2191	p.R731*	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	44	0	0	10	24	70.59	-	-	-	A	27238154	G	A	27238154	4	1	494	1	0	0	0	0	0	1	0	0	11897	1066	37	1	847	1	PHF12	17	27238154	Nonsense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		27238154	53957056	22	45538										
ZNF841	0	genome.wustl.edu	37	chr19	52570087	52570087	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	tttactaaaggacttgccacAttcattacatatgtagggtt	7	7	1	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	19	52570087	52570087	A	C	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.1048	p.C350G	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	74	0	0	75	29	27.88	-	-	-	C	52570087	A	C	52570087	3	2	494	1	0	0	0	0	1	0	0	0	18282	217	8	5	1730	5	ZNF841	19	52570087	Missense_Mutation	SNP	A	TCGA-BH-A0BA-01A-11W-A071-09		52570087	6558896	23	45539										
ACOT8	0	genome.wustl.edu	37	chr20	44485923	44485923	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cgccgcggtcgccacagcccTgcccatcttctggggcctgc	12	19	2	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	20	44485923	44485923	T	G	SNP	ACOT8	ENST00000217455	human	ensembl	69_37n	-1	known	missense	c.32	p.Q11P	0.612	NULL	pfam_Acyl_CoA_thio_II_dom,tigrfam_Acyl_CoA_thio	-	no_errors	ACOT8	HGNC	ENSG00000101473	8	0	0	6	4	40	-	-	-	G	44485923	T	G	44485923	3	3	494	1	0	0	0	0	1	0	0	0	156	1580	55	5	951	5	ACOT8	20	44485923	Missense_Mutation	SNP	T	TCGA-BH-A0BA-01A-11W-A071-09		44485923	18539597	24	45540										
DYRK1A	0	genome.wustl.edu	37	chr21	38884543	38884543	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	tcaacgacttcttcctcgacAtcttcctcctctactggtaa	4	15	4	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	21	38884543	38884543	A	G	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	silent	c.2001	p.T667	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	156	0	0	144	39	21.31	-	-	-	G	38884543	A	G	38884543	2	3	494	1	0	0	0	0	0	0	0	1	4889	204	8	5		5	DYRK1A	21	38884543	Silent	SNP	A	TCGA-BH-A0BA-01A-11W-A071-09		38884543	9245352	25	45541										
KRTAP10-5	0	genome.wustl.edu	37	chr21	46000198	46000198	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cagacgggcacgcagcaggcCtgctggcagggggaggaggc	20	11	0	1			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	21	46000198	46000198	C	G	SNP	KRTAP10-5	ENST00000400372	human	ensembl	69_37n	-1	known	missense	c.258	p.Q86H	0.000	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	333	0	0	147	91	38.08	-	-	-	G	46000198	C	G	46000198	3	3	494	1	0	0	0	0	1	0	0	0	8565	680	24	4	561	4	KRTAP10-5	21	46000198	Missense_Mutation	SNP	C	TCGA-BH-A0BA-01A-11W-A071-09	7115655	46000198	2129697	26	45542										
FAM123B	0	genome.wustl.edu	37	chrX	63412049	63412049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.819183045846003	1.31840796019901	0	1.58208955223881	0.333333333333333	0.930327025915261	0	cgtcatcatcatctggcaagGccatctcctccccacctcct	5	19	5	0			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	897874e6-cf93-4b4b-8b66-8914d13036aa	eb7e283b-158b-4b73-8460-4d89aad28b76	X	63412049	63412049	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.1118	p.A373V	1.000	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	385	0	0	87	118	57.28	-	-	-	A	63412049	G	A	63412049	3	1	494	1	0	0	0	0	1	0	0	0	5463	1203	42	4	2293	4	FAM123B	23	63412049	Missense_Mutation	SNP	G	TCGA-BH-A0BA-01A-11W-A071-09		63412049	91858511	27	45543										
UBR4	0	genome.wustl.edu	37	chr1	19464532	19464532	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gtggacatctccttcagtttCtccttctccttctccctcgg	6	16	5	0			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	1	19464532	19464532	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.8875	p.E2959Q	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	102	0	0	91	11	10.78	-	-	-	G	19464532	C	G	19464532	3	3	495	1	0	0	0	0	1	0	0	0	17001	922	32	2	6864	2	UBR4	1	19464532	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		19464532	229786089	1	45544										
SFPQ	0	genome.wustl.edu	37	chr1	35656463	35656463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	aggcttcttccaacagttcaTtggaaacataaggtgaaaga	9	7	2	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	1	35656463	35656463	T	C	SNP	SFPQ	ENST00000357214	human	ensembl	69_37n	-1	known	missense	c.1151	p.N384S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560	139	0	0	120	48	28.57	-	-	-	C	35656463	T	C	35656463	3	2	495	1	0	0	0	0	1	0	0	0	14248	1493	52	5	1004	5	SFPQ	1	35656463	Missense_Mutation	SNP	T	TCGA-BH-A0BC-01A-22D-A099-09	16191931	35656463	213594158	2	45545										
CEPT1	0	genome.wustl.edu	37	chr1	111724830	111724830	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ttccagtgctgaatattcaaAtgaaaatttttcctgcactt	5	8	1	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	1	111724830	111724830	A	T	SNP	CEPT1	ENST00000357172	human	ensembl	69_37n	1	known	missense	c.736	p.M246L	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CEPT1	HGNC	ENSG00000134255	118	0	0	197	69	25.94	-	-	-	T	111724830	A	T	111724830	3	4	495	1	0	0	0	0	1	0	0	0	3293	101	4	5	754	5	CEPT1	1	111724830	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09	76068367	111724830	137525791	3	45546										
FCGR2A	0	genome.wustl.edu	37	chr1	161475284	161475284	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	atggagacccaaatgtctcaGaatgtatgtcccagaaacct	8	10	1	3			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	1	161475284	161475284	G	A	SNP	FCGR2A	ENST00000271450	human	ensembl	69_37n	1	known	silent	c.27	p.Q9	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR2A	HGNC	ENSG00000143226	192	0	0	135	38	21.97	-	-	-	A	161475284	G	A	161475284	2	1	495	1	0	0	0	0	0	0	0	1	5827	933	33	2		2	FCGR2A	1	161475284	Silent	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09	49750454	161475284	87775337	4	45547										
AHCTF1	0	genome.wustl.edu	37	chr1	247079596	247079596	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	taaaactacaggaggctgttCattgactccactgaatctgt	8	9	2	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	1	247079596	247079596	C	A	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	nonsense	c.250	p.E84*	0.999	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	50	0	0	105	28	21.05	-	-	-	A	247079596	C	A	247079596	4	1	495	1	0	0	0	0	0	1	0	0	408	835	29	2	6713	2	AHCTF1	1	247079596	Nonsense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09	85604312	247079596	2171025	5	45548										
SMYD1	0	genome.wustl.edu	37	chr2	88390554	88390554	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	aactgcaacggttttactctCagtgatcagagaggcctgca	10	10	2	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	2	88390554	88390554	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	silent	c.552	p.L184	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	186	1	0.53	137	64	31.84	-	-	-	T	88390554	C	T	88390554	2	4	495	1	0	0	0	0	0	0	0	1	14910	813	29	2		2	SMYD1	2	88390554	Silent	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		88390554	154808819	6	45549										
DPP10	0	genome.wustl.edu	37	chr2	116572515	116572515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gaaaattttgcaggagattcAtcgaagattaggttcagtag	11	4	2	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	2	116572515	116572515	A	T	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.1859	p.H620L	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	169	0	0	202	57	22.01	-	-	-	T	116572515	A	T	116572515	3	4	495	1	0	0	0	0	1	0	0	0	4762	217	8	5	2096	5	DPP10	2	116572515	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09	28181961	116572515	126626858	7	45550										
WDR48	0	genome.wustl.edu	37	chr3	39136217	39136217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gagacctcaccctccattacCgtcagaagtccacgtgaagg	9	14	2	3			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	39136217	39136217	C	T	SNP	WDR48	ENST00000302313	human	ensembl	69_37n	1	known	missense	c.2017	p.R673C	1.000	pfam_DUF3337	pfam_DUF3337,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR48	HGNC	ENSG00000114742	75	0	0	62	22	25.88	-	-	-	T	39136217	C	T	39136217	3	4	495	1	0	0	0	0	1	0	0	0	17398	652	23	1	2091	1	WDR48	3	39136217	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		39136217	158886213	8	45551										
STAG1	0	genome.wustl.edu	37	chr3	136136813	136136813	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ccattttgtgagatcatgtgCactgaaataaacaaaaatgc	7	7	1	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	136136813	136136813	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.2110	p.A704P	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	199	0	0	228	73	24.25	-	-	-	G	136136813	C	G	136136813	3	3	495	1	0	0	0	0	1	0	0	0	15333	724	25	4	1722	4	STAG1	3	136136813	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09	97000596	136136813	61885617	9	45552										
COPB2	0	genome.wustl.edu	37	chr3	139077630	139077630	+	Frame_Shift_Del	DEL	C	C	-													0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ctgaaagtcttttccctcttCcatgacatttctctcttcat							TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	139077630	139077630	C	-	DEL	COPB2	ENST00000333188	human	ensembl	69_37n	-1	known	frame_shift_del	c.2509	p.E837fs	1.000	pirsf_Coatomer_b'su	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	227	0	0	300	70	18.52	-	-	-	-	139077630	C	-	139077630	7	5	495	1	0	1	0	1	0	0	0	0	3759	864	30	0	223	0	COPB2	3	139077630	Frame_Shift_Del	DEL	C	TCGA-BH-A0BC-01A-22D-A099-09	2940817	139077630	58944800	10	45553	376	3								
COPB2	0	genome.wustl.edu	37	chr3	139077631	139077631	+	Missense_Mutation	SNP	C	C	T													0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	tgaaagtcttttccctcttcCatgacatttctctcttcatt							TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	139077631	139077631	C	T	SNP	COPB2	ENST00000333188	human	ensembl	69_37n	-1	known	missense	c.2508	p.M836I	1.000	pirsf_Coatomer_b'su	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	228	0	0	304	73	19.16	-	-	-	T	139077631	C	T	139077631	3	4	495	1	0	0	0	0	1	0	0	0	3759	594	21	4	224	4	COPB2	3	139077631	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09	1	139077631	58944799	11	45554	376	3								
COPB2	0	genome.wustl.edu	37	chr3	139077632	139077632	+	Missense_Mutation	SNP	A	A	G													0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gaaagtcttttccctcttccAtgacatttctctcttcattt							TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	139077632	139077632	A	G	SNP	COPB2	ENST00000333188	human	ensembl	69_37n	-1	known	missense	c.2507	p.M836T	1.000	pirsf_Coatomer_b'su	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	227	0	0	299	74	19.68	-	-	-	G	139077632	A	G	139077632	3	3	495	1	0	0	0	0	1	0	0	0	3759	217	8	5	225	5	COPB2	3	139077632	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09	1	139077632	58944798	12	45555	376	3								
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	138	0	0	130	99	43.23	-	-	-	T	178952085	A	T	178952085	3	4	495	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09	39874453	178952085	19070345	13	45556										
PCDH7	0	genome.wustl.edu	37	chr4	30725361	30725361	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	tgttggcaacagacagtgatGatggcatcaatgcagacctg	12	8	1	4			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	4	30725361	30725361	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	69_37n	1	known	missense	c.2317	p.D773N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	41	0	0	38	10	20.83	-	-	-	A	30725361	G	A	30725361	3	1	495	1	0	0	0	0	1	0	0	0	11589	1290	45	2	2319	2	PCDH7	4	30725361	Missense_Mutation	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		30725361	160428915	14	45557										
MEF2C	0	genome.wustl.edu	37	chr5	88018447	88018447	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	tgcccatccttcagaaagtcGcatgcgcttgactgagggac	11	12	1	3			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	5	88018447	88018447	G	A	SNP	MEF2C	ENST00000437473	human	ensembl	69_37n	-1	known	nonsense	c.1396	p.R466*	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	68	0	0	37	18	32.73	-	-	-	A	88018447	G	A	88018447	4	1	495	1	0	0	0	0	0	1	0	0	9528	1095	38	1	29	1	MEF2C	5	88018447	Nonsense_Mutation	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		88018447	92896813	15	45558										
PCDHGB1	0	genome.wustl.edu	37	chr5	140731309	140731309	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ctggccagtgacctggagccGcgggagctgttgtcctacgt	15	12	0	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	5	140731309	140731309	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.1482	p.P494	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	17	0	0	6	5	45.45	-	-	-	A	140731309	G	A	140731309	2	1	495	1	0	0	0	0	0	0	0	1	11635	1074	38	1		1	PCDHGB1	5	140731309	Silent	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09	52712862	140731309	40183951	16	45559										
TDRD6	0	genome.wustl.edu	37	chr6	46657115	46657115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	attttattgctcctttgagcAtgtgtattatgtcagcctgt	8	7	1	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	6	46657115	46657115	A	G	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.1250	p.H417R	0.982	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	48	0	0	34	11	23.91	-	-	-	G	46657115	A	G	46657115	3	3	495	1	0	0	0	0	1	0	0	0	15829	217	8	5	1252	5	TDRD6	6	46657115	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09		46657115	124457952	17	45560										
DPYSL2	0	genome.wustl.edu	37	chr8	26484190	26484190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	tcgcttccagctaacggattGccaggtaagaaagtcggctt	11	10	0	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	8	26484190	26484190	G	A	SNP	DPYSL2	ENST00000311151	human	ensembl	69_37n	1	known	missense	c.536	p.C179Y	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964	204	0	0	174	57	24.68	-	-	-	A	26484190	G	A	26484190	3	1	495	1	0	0	0	0	1	0	0	0	4782	1319	46	4	554	4	DPYSL2	8	26484190	Missense_Mutation	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		26484190	119879832	18	45561										
ZFPM2	0	genome.wustl.edu	37	chr8	106431410	106431410	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ttgaagatgaggaagaagaaTgtccatcagaggaaacagac	12	5	1	7			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	8	106431410	106431410	T	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.79	p.C27S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	117	0	0	97	55	36.18	-	-	-	A	106431410	T	A	106431410	3	1	495	1	0	0	0	0	1	0	0	0	17754	1464	51	5	85	5	ZFPM2	8	106431410	Missense_Mutation	SNP	T	TCGA-BH-A0BC-01A-22D-A099-09	79947220	106431410	39932612	19	45562										
FAM22G	0	genome.wustl.edu	37	chr9	99701178	99701178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	cccaggagggagaggaccccAgggagctcttcaatctccat	12	13	3	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	9	99701178	99701178	A	C	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	missense	c.1973	p.Q658P	0.009	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	157	0	0	113	18	13.64	-	-	-	C	99701178	A	C	99701178	3	2	495	1	0	0	0	0	1	0	0	0	5588	188	7	5	1999	5	FAM22G	9	99701178	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09		99701178	41512253	20	45563										
HKDC1	0	genome.wustl.edu	37	chr10	71007230	71007230	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	accatcgtctccttccgctcGgccaatctctgtgcagcagc	8	17	2	0			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	10	71007230	71007230	G	T	SNP	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	silent	c.1146	p.S382	0.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	70	0	0	32	4	11.11	-	-	-	T	71007230	G	T	71007230	2	4	495	1	0	0	0	0	0	0	0	1	7244	1103	39	3		3	HKDC1	10	71007230	Silent	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		71007230	64527517	21	45564										
AMOTL1	0	genome.wustl.edu	37	chr11	94532836	94532836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	cagtcagcacgccaagaaccGcagggtcaagaacaccaggt	11	13	2	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	11	94532836	94532836	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	silent	c.480	p.P160	0.997	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	80	0	0	25	6	19.35	-	-	-	A	94532836	G	A	94532836	2	1	495	1	0	0	0	0	0	0	0	1	583	1074	38	1		1	AMOTL1	11	94532836	Silent	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		94532836	40473680	22	45565										
ACSS3	0	genome.wustl.edu	37	chr12	81545639	81545639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ttagggtgtgattaggcccaCtgggggatacgctgtcatgc	15	8	1	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	12	81545639	81545639	C	T	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.938	p.T313I	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	261	0	0	335	136	28.87	-	-	-	T	81545639	C	T	81545639	3	4	495	1	0	0	0	0	1	0	0	0	190	565	20	4	960	4	ACSS3	12	81545639	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		81545639	52306256	23	45566										
SRRM4	0	genome.wustl.edu	37	chr12	119583290	119583290	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gactcaggaaatgacacgtcCtcgccaccctccacgcaaac	7	17	1	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	12	119583290	119583290	C	T	SNP	SRRM4	ENST00000267260	human	ensembl	69_37n	1	known	silent	c.876	p.S292	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	50	0	0	18	11	37.93	-	-	-	T	119583290	C	T	119583290	2	4	495	1	0	0	0	0	0	0	0	1	15262	668	24	4		4	SRRM4	12	119583290	Silent	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09	38037651	119583290	14268605	24	45567										
MYO5A	0	genome.wustl.edu	37	chr15	52620094	52620094	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	attgttgatgttagcaacgaCcttactttctgatcatcatt	6	8	3	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	15	52620094	52620094	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	silent	c.4665	p.R1555	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	214	0	0	258	82	24.12	-	-	-	T	52620094	C	T	52620094	2	4	495	1	0	0	0	0	0	0	0	1	10150	506	18	4		4	MYO5A	15	52620094	Silent	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		52620094	49911298	25	45568										
UNC13C	0	genome.wustl.edu	37	chr15	54556502	54556502	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	atccaggaaatgtttcagatTtctaaagaagattttgtgca	8	5	2	3			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	15	54556502	54556502	T	A	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.3585	p.I1195	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	107	0	0	174	68	27.87	-	-	-	A	54556502	T	A	54556502	2	1	495	1	0	0	0	0	0	0	0	1	17083	1829	64	5		5	UNC13C	15	54556502	Silent	SNP	T	TCGA-BH-A0BC-01A-22D-A099-09	1936408	54556502	47974890	26	45569										
ANPEP	0	genome.wustl.edu	37	chr15	90349393	90349393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	ggggctgggagcctcccacaCcacgcaggaccaccctgtgc	13	17	0	0			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	15	90349393	90349393	C	T	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	missense	c.422	p.G141D	0.024	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	112	0	0	33	9	20.93	-	-	-	T	90349393	C	T	90349393	3	4	495	1	0	0	0	0	1	0	0	0	709	507	18	4	2561	4	ANPEP	15	90349393	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09	35792891	90349393	12181999	27	45570										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	116	0	0	20	12	37.5	-	-	-	A	7577539	G	A	7577539	3	1	495	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09		7577539	73617671	28	45571										
LYZL6	0	genome.wustl.edu	37	chr17	34264775	34264775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	gccagaccttgacagtctacGtggcaaaggttttccgagta	11	10	1	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	17	34264775	34264775	G	A	SNP	LYZL6	ENST00000492340	human	ensembl	69_37n	-1	known	missense	c.191	p.T64M	0.078	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LYZL6	HGNC	ENSG00000161572	126	0	0	52	39	42.86	-	-	-	A	34264775	G	A	34264775	3	1	495	1	0	0	0	0	1	0	0	0	9201	1136	40	1	173	1	LYZL6	17	34264775	Missense_Mutation	SNP	G	TCGA-BH-A0BC-01A-22D-A099-09	26687236	34264775	46930435	29	45572										
ZNF415	0	genome.wustl.edu	37	chr19	53612661	53612661	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	aatatatctgtaaggtttttCcctaatgcatgatttctgtt	6	6	2	1			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	19	53612661	53612661	C	A	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	nonsense	c.781	p.E261*	0.907	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	129	0	0	150	44	22.68	-	-	-	A	53612661	C	A	53612661	4	1	495	1	0	0	0	0	0	1	0	0	17988	864	30	2	1034	2	ZNF415	19	53612661	Nonsense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		53612661	5516322	30	45573										
GAB4	0	genome.wustl.edu	37	chr22	17450868	17450868	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	cagagcctgtgaggctgcctCtggtgtggccatgggaggcc	17	11	1	2			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	22	17450868	17450868	C	G	SNP	GAB4	ENST00000400588	human	ensembl	69_37n	-1	known	missense	c.902	p.R301T	0.989	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568	122	0	0	29	16	35.56	-	-	-	G	17450868	C	G	17450868	3	3	495	1	0	0	0	0	1	0	0	0	6200	913	32	2	850	2	GAB4	22	17450868	Missense_Mutation	SNP	C	TCGA-BH-A0BC-01A-22D-A099-09		17450868	33853698	31	45574										
GTSE1	0	genome.wustl.edu	37	chr22	46712235	46712235	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.433027716955335	1.6919044845661	3.83498349834983	1.23267326732673	1	1	0	tagaagtatcagacggcgagAttcctgtctaaattccaaga	9	8	2	4			TCGA-BH-A0BC-01A-22D-A099-09	TCGA-BH-A0BC-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc	b1d4c4f2-a008-4a03-9885-33058dd170e7	22	46712235	46712235	A	T	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1358	p.D453V	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	44	0	0	43	21	32.81	-	-	-	T	46712235	A	T	46712235	3	4	495	1	0	0	0	0	1	0	0	0	6936	333	12	5	1380	5	GTSE1	22	46712235	Missense_Mutation	SNP	A	TCGA-BH-A0BC-01A-22D-A099-09	29261367	46712235	4592331	32	45575										
GNL2	0	genome.wustl.edu	37	chr1	38034775	38034775	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atctctgtgttagcatcacaGtgactgttctcttctgtttc	7	10	4	1			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	38034775	38034775	G	C	SNP	GNL2	ENST00000373062	human	ensembl	69_37n	-1	known	missense	c.1545	p.H515Q	0.000	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697	169	0	0	113	48	29.81	-	-	-	C	38034775	G	C	38034775	3	2	496	1	0	0	0	0	1	0	0	0	6588	1020	36	4	666	4	GNL2	1	38034775	Missense_Mutation	SNP	G	TCGA-BH-A0BD-01A-11W-A050-09		38034775	211215846	1	45576										
KCNT2	0	genome.wustl.edu	37	chr1	196300389	196300389	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaggtgggtaacctttagcaTacctgtaaaataatacaaaa	7	6	0	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	196300389	196300389	T	C	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.2000	p.Y667C	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	134	0	0	97	227	70.06	-	-	-	C	196300389	T	C	196300389	3	2	496	1	0	0	0	0	1	0	0	0	8146	1406	49	5	1451	5	KCNT2	1	196300389	Missense_Mutation	SNP	T	TCGA-BH-A0BD-01A-11W-A050-09	158265614	196300389	52950232	2	45577										
RYR2	0	genome.wustl.edu	37	chr1	237955580	237955580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatcttagctattctgcacaCggtcatttctttcttctgca	5	11	6	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	237955580	237955580	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.13757	p.T4586M	1.000	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	80	0	0	99	25	20.16	-	-	-	T	237955580	C	T	237955580	3	4	496	1	0	0	0	0	1	0	0	0	13855	536	19	1	14113	1	RYR2	1	237955580	Missense_Mutation	SNP	C	TCGA-BH-A0BD-01A-11W-A050-09	41655191	237955580	11295041	3	45578										
CADM2	0	genome.wustl.edu	37	chr3	85008572	85008572	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcgataccccattctgcggGtgctttgccgctgccgcttc	11	16	1	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	85008572	85008572	G	T	SNP	CADM2	ENST00000473523	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CADM2	HGNC	ENSG00000175161	61	0	0	27	12	30	-	-	-	T	85008572	G	T	85008572	1	4	496	0	1	0	0	0	0	0	0	0	2592	1276	44	4		4	CADM2	3	85008572	RNA	SNP	G	TCGA-BH-A0BD-01A-11W-A050-09		85008572	113013858	4	45579										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	111	46	29.3	-	-	-	G	178952085	A	G	178952085	3	3	496	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0BD-01A-11W-A050-09	93943513	178952085	19070345	5	45580										
HCN1	0	genome.wustl.edu	37	chr5	45396610	45396610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttaccttctcttgatactgcCgcctcgaagaatccagagac	7	13	1	3			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	5	45396610	45396610	C	T	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	missense	c.1214	p.R405Q	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	102	0	0	89	44	33.08	-	-	-	T	45396610	C	T	45396610	3	4	496	1	0	0	0	0	1	0	0	0	7047	652	23	1	1478	1	HCN1	5	45396610	Missense_Mutation	SNP	C	TCGA-BH-A0BD-01A-11W-A050-09		45396610	135518650	6	45581										
MRPL2	0	genome.wustl.edu	37	chr6	43022206	43022206	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggatactcggcctactgttgCtacgcacgtttccagcacct	9	14	0	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	6	43022206	43022206	C	A	SNP	MRPL2	ENST00000388752	human	ensembl	69_37n	-1	known	missense	c.724	p.A242S	1.000	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like	-	no_errors	MRPL2	HGNC	ENSG00000112651	44	0	0	33	29	46.77	-	-	-	A	43022206	C	A	43022206	3	1	496	1	0	0	0	0	1	0	0	0	9857	797	28	4	197	4	MRPL2	6	43022206	Missense_Mutation	SNP	C	TCGA-BH-A0BD-01A-11W-A050-09		43022206	128092861	7	45582										
UBR5	0	genome.wustl.edu	37	chr8	103298799	103298799	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagaatcacttgagtcattCgattgagaatcatcttcaga	7	8	6	4			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	8	103298799	103298799	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.5004	p.S1668	0.976	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	220	2	0.9	169	130	43.33	-	-	-	A	103298799	C	A	103298799	2	1	496	1	0	0	0	0	0	0	0	1	17002	871	31	3		3	UBR5	8	103298799	Silent	SNP	C	TCGA-BH-A0BD-01A-11W-A050-09		103298799	43065223	8	45583										
C9orf43	0	genome.wustl.edu	37	chr9	116186580	116186580	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taagatgtttctatctatacAccgcctcaccctggaagtaa	6	11	3	1			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	9	116186580	116186580	A	G	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	1	known	missense	c.791	p.H264R	0.870	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	199	0	0	152	75	32.89	-	-	-	G	116186580	A	G	116186580	3	3	496	1	0	0	0	0	1	0	0	0	2508	159	6	5	817	5	C9orf43	9	116186580	Missense_Mutation	SNP	A	TCGA-BH-A0BD-01A-11W-A050-09		116186580	25026851	9	45584										
FAM73B	0	genome.wustl.edu	37	chr9	131812165	131812166	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	ggcactaagcgtgggccagcINSggggggacagcggcagcacc							TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	9	131812165	131812166	-	G	INS	FAM73B	ENST00000358369	human	ensembl	69_37n	1	known	frame_shift_ins	c.598_599	p.D202fs	0.991:0.981	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343	34	0	0	17	2	10.53	-	-	-	G	131812166	-	G	131812165	7	5	496	1	0	1	1	0	0	0	0	0	5663	759	27	0	616	0	FAM73B	9	131812165	Frame_Shift_Ins	INS	-	TCGA-BH-A0BD-01A-11W-A050-09	15625585	131812165	9401266	10	45585										
SORCS1	0	genome.wustl.edu	37	chr10	108337210	108337210	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgtgccccagcagatccccGctttggcgttgaaggcggag	14	13	0	2			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	10	108337210	108337210	G	A	SNP	SORCS1	ENST00000263054	human	ensembl	69_37n	-1	known	missense	c.3475	p.R1159W	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	222	0	0	176	79	30.86	-	-	-	A	108337210	G	A	108337210	3	1	496	1	0	0	0	0	1	0	0	0	15019	1086	38	1	104	1	SORCS1	10	108337210	Missense_Mutation	SNP	G	TCGA-BH-A0BD-01A-11W-A050-09		108337210	27197537	11	45586										
SHANK2	0	genome.wustl.edu	37	chr11	70332515	70332515	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcgatcagcatgttcttctTgtcatcgcctttccggtctc	8	13	5	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	11	70332515	70332515	T	C	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.3886	p.K1296E	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	51	0	0	301	38	11.21	-	-	-	C	70332515	T	C	70332515	3	2	496	1	0	0	0	0	1	0	0	0	14354	1821	63	5	1674	5	SHANK2	11	70332515	Missense_Mutation	SNP	T	TCGA-BH-A0BD-01A-11W-A050-09		70332515	64674001	12	45587										
AAAS	0	genome.wustl.edu	37	chr12	53714438	53714438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccttccaggggtctttagGggatcctttgtcagttgtag	13	8	2	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	12	53714438	53714438	G	A	SNP	AAAS	ENST00000209873	human	ensembl	69_37n	-1	known	silent	c.162	p.P54	0.915	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914	143	0	0	112	65	36.72	-	-	-	A	53714438	G	A	53714438	2	1	496	1	0	0	0	0	0	0	0	1	8	1219	43	4		4	AAAS	12	53714438	Silent	SNP	G	TCGA-BH-A0BD-01A-11W-A050-09		53714438	80137457	13	45588										
KIAA1704	0	genome.wustl.edu	37	chr13	45580344	45580344	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actatgttttcagaaaacagAggaaaaatcaggatgatgac	9	5	2	4			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	13	45580344	45580344	A	G	SNP	KIAA1704	ENST00000361121	human	ensembl	69_37n	1	known	missense	c.229	p.R77G	0.982	NULL	pfam_DUF3752	-	no_errors	KIAA1704	HGNC	ENSG00000133114	83	0	0	87	47	35.07	-	-	-	G	45580344	A	G	45580344	3	3	496	1	0	0	0	0	1	0	0	0	8304	295	11	5	239	5	KIAA1704	13	45580344	Missense_Mutation	SNP	A	TCGA-BH-A0BD-01A-11W-A050-09		45580344	69589534	14	45589										
LCTL	0	genome.wustl.edu	37	chr15	66853388	66853388	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtacaggccggtgccgcggaGcttcaggcccggcgcatggt	17	13	1	0			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	15	66853388	66853388	G	C	SNP	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	missense	c.661	p.L221V	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	117	0	0	44	31	41.33	-	-	-	C	66853388	G	C	66853388	3	2	496	1	0	0	0	0	1	0	0	0	8748	971	34	4	1074	4	LCTL	15	66853388	Missense_Mutation	SNP	G	TCGA-BH-A0BD-01A-11W-A050-09		66853388	35678004	15	45590										
ADCY7	0	genome.wustl.edu	37	chr16	50334752	50334753	+	Frame_Shift_Del	DEL	GG	GG	-													0	0	1	0	0	0	1	1	0	tggtcccacgacgtgtccctGgccaaccggatggaggcagc							TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	16	50334752	50334753	GG	-	DEL	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	frame_shift_del	c.1203_1204	p.A402fs	0.999:1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	109	0	0	62	46	42.59	-	-	-	-	50334753	GG	-	50334752	7	5	496	1	0	1	0	1	0	0	0	0	299	1335	47	0	1233	0	ADCY7	16	50334752	Frame_Shift_Del	DEL	GG	TCGA-BH-A0BD-01A-11W-A050-09		50334752	40020001	16	45591										
CCDC94	0	genome.wustl.edu	37	chr19	4247167	4247167	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	tcggagcgaaaagtattaaaCgtaagtgttgggcgactggg							TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	19	4247167	4247167	C	-	DEL	CCDC94	ENST00000262962	human	ensembl	69_37n	1	known	frame_shift_del	c.24	p.N8fs	1.000	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC94	HGNC	ENSG00000105248	148	0	0	218	121	35.17	-	-	-	-	4247167	C	-	4247167	7	5	496	1	0	1	0	1	0	0	0	0	2900	550	19	0	26	0	CCDC94	19	4247167	Frame_Shift_Del	DEL	C	TCGA-BH-A0BD-01A-11W-A050-09		4247167	54881816	17	45592										
PINK1	0	genome.wustl.edu	37	chr1	20964471	20964471	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tgctgtgtatgaagccaccaTgcctacattgccccagaacc	8	14	0	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	1	20964471	20964471	T	C	SNP	PINK1	ENST00000321556	human	ensembl	69_37n	1	known	missense	c.524	p.M175T	0.297	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PINK1	HGNC	ENSG00000158828	86	0	0	71	15	17.44	-	-	-	C	20964471	T	C	20964471	3	2	497	1	0	0	0	0	1	0	0	0	12006	1464	51	5	530	5	PINK1	1	20964471	Missense_Mutation	SNP	T	TCGA-BH-A0BF-01A-21D-A12Q-09		20964471	228286150	1	45593										
L1TD1	0	genome.wustl.edu	37	chr1	62673212	62673212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	agccttagaaaatttgccagCcaaaaatcttctgtgaaaga	7	8	2	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	1	62673212	62673212	C	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	silent	c.912	p.S304	0.024	pfam_Transposase_22	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	189	1	0.53	97	24	19.83	-	-	-	T	62673212	C	T	62673212	2	4	497	1	0	0	0	0	0	0	0	1	8643	738	26	4		4	L1TD1	1	62673212	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	41708741	62673212	186577409	2	45594										
ARHGAP15	0	genome.wustl.edu	37	chr2	144525681	144525681	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	atccacatggtctaccagaaCcagatagctgagctcatgct	8	12	2	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	144525681	144525681	C	T	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	silent	c.1368	p.N456	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	170	0	0	78	19	19.59	-	-	-	T	144525681	C	T	144525681	2	4	497	1	0	0	0	0	0	0	0	1	868	506	18	4		4	ARHGAP15	2	144525681	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		144525681	98673692	3	45595										
TTN	0	genome.wustl.edu	37	chr2	179647587	179647587	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tccagcctcatttacagcacTgcaagtaaatcgcccgctgt	7	14	1	0			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	179647587	179647587	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.3046	p.S1016G	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	87	0	0	49	15	23.44	-	-	-	C	179647587	T	C	179647587	3	2	497	1	0	0	0	0	1	0	0	0	16832	1580	55	5	108322	5	TTN	2	179647587	Missense_Mutation	SNP	T	TCGA-BH-A0BF-01A-21D-A12Q-09	35121906	179647587	63551786	4	45596										
KLHL30	0	genome.wustl.edu	37	chr2	239057685	239057685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	gcctcgcccttcctgcccaaGtacctgtcctcgcctcgctg	8	20	0	0			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	239057685	239057685	G	T	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	1	known	missense	c.1377	p.K459N	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427	62	0	0	29	9	23.68	-	-	-	T	239057685	G	T	239057685	3	4	497	1	0	0	0	0	1	0	0	0	8437	1020	36	4	1399	4	KLHL30	2	239057685	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	59410098	239057685	4141688	5	45597										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0	64	17	20.73	-	-	-	A	178921553	T	A	178921553	3	1	497	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-BH-A0BF-01A-21D-A12Q-09		178921553	19100877	6	45598										
ERCC8	0	genome.wustl.edu	37	chr5	60199504	60199504	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tgtgagaacaggatccagacTtcaagtcacaaagttgtact	9	8	2	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	5	60199504	60199504	T	C	SNP	ERCC8	ENST00000265038	human	ensembl	69_37n	-1	known	missense	c.521	p.K174R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167	150	0	0	100	19	15.97	-	-	-	C	60199504	T	C	60199504	3	2	497	1	0	0	0	0	1	0	0	0	5256	1609	56	5	697	5	ERCC8	5	60199504	Missense_Mutation	SNP	T	TCGA-BH-A0BF-01A-21D-A12Q-09		60199504	120715756	7	45599										
BPHL	0	genome.wustl.edu	37	chr6	3119540	3119540	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	aatcagcctgagcctgagtaCcgctaaggctttaatcacgg	10	11	2	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	3119540	3119540	C	A	SNP	BPHL	ENST00000424847	human	ensembl	69_37n	1	known	nonsense	c.129	p.Y43*	0.001	NULL	NULL	-	no_errors	BPHL	HGNC	ENSG00000137274	43	0	0	36	5	11.9	-	-	-	A	3119540	C	A	3119540	4	1	497	1	0	0	0	0	0	1	0	0	1497	522	18	4		4	BPHL	6	3119540	Nonsense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		3119540	167995527	8	45600										
NUP153	0	genome.wustl.edu	37	chr6	17669532	17669532	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	atctcaacttacagaattcaGaggagaagaaacaatggatg	9	6	2	4			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	17669532	17669532	G	C	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.1006	p.L336V	0.038	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	148	0	0	87	23	20.91	-	-	-	C	17669532	G	C	17669532	3	2	497	1	0	0	0	0	1	0	0	0	10828	933	33	2	3485	2	NUP153	6	17669532	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	14549992	17669532	153445535	9	45601										
PPP2R5D	0	genome.wustl.edu	37	chr6	42976144	42976144	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	ctgccccttaaagaagagcaCaagatgttcctcatccgtgt	8	12	1	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	42976144	42976144	C	T	SNP	PPP2R5D	ENST00000470467	human	ensembl	69_37n	1	novel	nonsense	c.715	p.Q239*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R5D	HGNC	ENSG00000112640	116	0	0	75	25	25	-	-	-	T	42976144	C	T	42976144	4	4	497	1	0	0	0	0	0	1	0	0	12472	477	17	4	991	4	PPP2R5D	6	42976144	Nonsense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	25306612	42976144	128138923	10	45602										
SRF	0	genome.wustl.edu	37	chr6	43141698	43141698	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	cagcccatgatcaccagtgaGaccggcaaggcactgattca	10	13	2	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	43141698	43141698	G	C	SNP	SRF	ENST00000265354	human	ensembl	69_37n	1	known	missense	c.627	p.E209D	1.000	superfamily_TF_MADSbox	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658	154	0	0	102	23	18.4	-	-	-	C	43141698	G	C	43141698	3	2	497	1	0	0	0	0	1	0	0	0	15234	933	33	2	633	2	SRF	6	43141698	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	165554	43141698	127973369	11	45603										
FSCN1	0	genome.wustl.edu	37	chr7	5644991	5644991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	gacttcttcttcgagttctgCgactataacaaggtggccat	9	10	3	0			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	5644991	5644991	C	T	SNP	FSCN1	ENST00000382361	human	ensembl	69_37n	1	known	silent	c.1368	p.C456	0.999	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618	55	0	0	25	6	19.35	-	-	-	T	5644991	C	T	5644991	2	4	497	1	0	0	0	0	0	0	0	1	6116	776	27	1		1	FSCN1	7	5644991	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		5644991	153493672	12	45604										
HGF	0	genome.wustl.edu	37	chr7	81392029	81392029	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	atgaagtaacttacttgcaaGtgaatggaagtcctttattc	8	6	0	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	81392029	81392029	G	C	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.248	p.T83S	1.000	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	550	0	0	272	51	15.79	-	-	-	C	81392029	G	C	81392029	3	2	497	1	0	0	0	0	1	0	0	0	7136	1029	36	4	2026	4	HGF	7	81392029	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	75747038	81392029	77746634	13	45605										
MTERF	0	genome.wustl.edu	37	chr7	91503433	91503433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tctgcgggatcattgtgaccCaatgacaaaccggctgcctg	11	12	2	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	91503433	91503433	C	G	SNP	MTERF	ENST00000351870	human	ensembl	69_37n	-1	known	missense	c.675	p.L225F	0.947	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989	139	0	0	65	18	21.69	-	-	-	G	91503433	C	G	91503433	3	3	497	1	0	0	0	0	1	0	0	0	9990	593	21	4	528	4	MTERF	7	91503433	Missense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	10111404	91503433	67635230	14	45606										
ABO	0	genome.wustl.edu	37	chr9	136131416	136131416	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	cggctgcttccgtagaagccGgggtgcagggtgccgaacag	17	11	0	1			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	9	136131416	136131416	G	A	SNP	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	15	0	0	8	9	52.94	-	-	-	A	136131416	G	A	136131416	1	1	497	0	1	0	0	0	0	0	0	0	97	1103	39	1		1	ABO	9	136131416	RNA	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09		136131416	5082015	15	45607										
TRPM5	0	genome.wustl.edu	37	chr11	2434145	2434145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	gttccccaggaacacagtcaCgggagcgccccagaatttcc	10	15	1	1			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	2434145	2434145	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2200	p.V734M	0.998	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	15	0	0	16	5	22.73	-	-	-	T	2434145	C	T	2434145	3	4	497	1	0	0	0	0	1	0	0	0	16685	536	19	1	1343	1	TRPM5	11	2434145	Missense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		2434145	132572371	16	45608										
MAML2	0	genome.wustl.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	196	1	0.51	189	45	19.15	-	-	-	T	95825407	C	T	95825407	2	4	497	1	0	0	0	0	0	0	0	1	9277	796	28	4		4	MAML2	11	95825407	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	93391262	95825407	39181109	17	45609										
PHLDB1	0	genome.wustl.edu	37	chr11	118486917	118486917	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	ctgtccggcagcctacccggCtcactcagggtaaggctgga	13	14	2	0			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	118486917	118486917	C	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.346	p.L116I	1.000	superfamily_SMAD_FHA_domain	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	24	0	0	18	8	29.63	-	-	-	A	118486917	C	A	118486917	3	1	497	1	0	0	0	0	1	0	0	0	11925	797	28	4	356	4	PHLDB1	11	118486917	Missense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	22661510	118486917	16519599	18	45610										
PAN2	0	genome.wustl.edu	37	chr12	56721335	56721335	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	gcagctagcaggttgccatgCacatcaaagtctgacagact	10	11	2	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	12	56721335	56721335	C	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	silent	c.732	p.V244	0.998	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	97	0	0	65	18	21.69	-	-	-	A	56721335	C	A	56721335	2	1	497	1	0	0	0	0	0	0	0	1	11487	697	25	4		4	PAN2	12	56721335	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		56721335	77130560	19	45611										
HSP90AA1	0	genome.wustl.edu	37	chr14	102551267	102551269	+	In_Frame_Del	DEL	TTC	TTC	-													0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tctttctcttctttttctttTtcttcttctttgtcttcctt							TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	14	102551267	102551269	TTC	-	DEL	HSP90AA1	ENST00000334701	human	ensembl	69_37n	-1	known	in_frame_del	c.1098_1096	p.E366in_frame_del	0.047:0.981:0.982	pirsf_Hsp90,pfam_Hsp90	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824	463	0	0	190	27	12.39	-	-	-	-	102551269	TTC	-	102551267	7	5	497	1	0	1	0	1	0	0	0	0	7454	1838	64	0	1494	0	HSP90AA1	14	102551267	In_Frame_Del	DEL	TTC	TCGA-BH-A0BF-01A-21D-A12Q-09		102551267	4798273	20	45612										
CHRNA3	0	genome.wustl.edu	37	chr15	78894311	78894311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	gatgtcggggtagatctcctCgcagcagttgtacttgatgt	13	8	1	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	15	78894311	78894311	C	T	SNP	CHRNA3	ENST00000326828	human	ensembl	69_37n	-1	known	missense	c.673	p.E225K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644	476	0	0	258	54	17.25	-	-	-	T	78894311	C	T	78894311	3	4	497	1	0	0	0	0	1	0	0	0	3413	893	31	1	937	1	CHRNA3	15	78894311	Missense_Mutation	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		78894311	23637081	21	45613										
POLDIP2	0	genome.wustl.edu	37	chr17	26680331	26680331	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	aaggtcacagcttctgtctgAgatctctgagactaaggcaa	10	9	4	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	17	26680331	26680331	A	C	SNP	POLDIP2	ENST00000003607	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	122	0	0	84	23	21.5	-	-	-	C	26680331	A	C	26680331	1	2	497	0	1	0	0	0	0	0	0	0	12268	291	11	5		5	POLDIP2	17	26680331	RNA	SNP	A	TCGA-BH-A0BF-01A-21D-A12Q-09		26680331	54514879	22	45614										
KRT27	0	genome.wustl.edu	37	chr17	38935976	38935976	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tcgttgaaccaggcctccgcGtccctgcggttctgctctgc	11	16	2	1			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	17	38935976	38935976	G	A	SNP	KRT27	ENST00000301656	human	ensembl	69_37n	-1	known	silent	c.822	p.D274	0.018	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	88	0	0	43	14	24.56	-	-	-	A	38935976	G	A	38935976	2	1	497	1	0	0	0	0	0	0	0	1	8517	1136	40	1		1	KRT27	17	38935976	Silent	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	12255645	38935976	42259234	23	45615										
ZNF208	0	genome.wustl.edu	37	chr19	22170078	22170078	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	ggactcttttccttcctccaGaaaaatgatcaggtctggct	8	11	3	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	19	22170078	22170078	G	C	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.166	p.L56V	0.007	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	637	0	0	184	43	18.94	-	-	-	C	22170078	G	C	22170078	3	2	497	1	0	0	0	0	1	0	0	0	17862	933	33	2	3684	2	ZNF208	19	22170078	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09		22170078	36958905	24	45616										
RTN2	0	genome.wustl.edu	37	chr19	45997923	45997923	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	agatggtccaaccgaagcctCaggtcttccagagggcgctc	12	13	2	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	19	45997923	45997923	C	T	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	0.983	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	98	0	0	61	15	19.74	-	-	-	T	45997923	C	T	45997923	2	4	497	1	0	0	0	0	0	0	0	1	13812	813	29	2		2	RTN2	19	45997923	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09	23827845	45997923	13131060	25	45617										
MYH7B	0	genome.wustl.edu	37	chr20	33581196	33581196	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	ctccgtgaccagcgcctggcCaaggtgctgacgctgctgca	13	15	0	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	20	33581196	33581196	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	silent	c.2493	p.A831	0.989	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	51	0	0	40	14	25.45	-	-	-	T	33581196	C	T	33581196	2	4	497	1	0	0	0	0	0	0	0	1	10112	581	21	4		4	MYH7B	20	33581196	Silent	SNP	C	TCGA-BH-A0BF-01A-21D-A12Q-09		33581196	29444324	26	45618										
MYBL2	0	genome.wustl.edu	37	chr20	42311462	42311462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	tgaccagcaatgccagtacaGgtggctgagagttttgaatc	12	8	0	3			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	20	42311462	42311462	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	1	known	missense	c.215	p.R72K	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	159	0	0	86	42	32.81	-	-	-	A	42311462	G	A	42311462	3	1	497	1	0	0	0	0	1	0	0	0	10082	1000	35	4	229	4	MYBL2	20	42311462	Missense_Mutation	SNP	G	TCGA-BH-A0BF-01A-21D-A12Q-09	8730266	42311462	20714058	27	45619										
RPGR	0	genome.wustl.edu	37	chrX	38145532	38145534	+	In_Frame_Del	DEL	TCC	TCC	-													0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	cttctccctccccttctcctTcctcttctccctccccttct							TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	38145532	38145534	TCC	-	DEL	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_del	c.2720_2718	p.E907in_frame_del	0.994:0.977:0.978	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	12	0	0	5	4	44.44	-	-	-	-	38145534	TCC	-	38145532	7	5	497	1	0	1	0	1	0	0	0	0	13634	1783	62	0	1301	0	RPGR	23	38145532	In_Frame_Del	DEL	TCC	TCGA-BH-A0BF-01A-21D-A12Q-09		38145532	117125028	28	45620										
FUNDC1	0	genome.wustl.edu	37	chrX	44386496	44386498	+	In_Frame_Del	DEL	TTG	TTG	-													0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	atcttacttcttcaattaaaTtgttgatttcaggtgctgct							TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	44386496	44386498	TTG	-	DEL	FUNDC1	ENST00000378045	human	ensembl	69_37n	-1	known	in_frame_del	c.377_375	p.N126in_frame_del	0.997:1.000:1.000	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC1	HGNC	ENSG00000069509	642	0	0	192	62	24.12	-	-	-	-	44386498	TTG	-	44386496	7	5	497	1	0	1	0	1	0	0	0	0	6146	1493	52	0	98	0	FUNDC1	23	44386496	In_Frame_Del	DEL	TTG	TCGA-BH-A0BF-01A-21D-A12Q-09	6240964	44386496	110884064	29	45621										
PHKA1	0	genome.wustl.edu	37	chrX	71813106	71813106	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	4	0.554547847860328	1.58139534883721	4.03255813953488	0.560077519379845	0.485714285714286	1	0	aaaggacccactacttggagTcatagaggttccaggtgact	11	9	1	2			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	71813106	71813106	T	A	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.3142	p.T1048S	0.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	282	0	0	102	40	28.17	-	-	-	A	71813106	T	A	71813106	3	1	497	1	0	0	0	0	1	0	0	0	11917	1667	58	5	596	5	PHKA1	23	71813106	Missense_Mutation	SNP	T	TCGA-BH-A0BF-01A-21D-A12Q-09	27426610	71813106	83457454	30	45622										
PLEKHM2	0	genome.wustl.edu	37	chr1	16043237	16043237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	ctctggctactgggtgctcgTggtgcattttactcggagag	14	9	1	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	16043237	16043237	T	C	SNP	PLEKHM2	ENST00000375799	human	ensembl	69_37n	1	known	missense	c.203	p.V68A	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786	139	0	0	25	7	21.88	-	-	-	C	16043237	T	C	16043237	3	2	498	1	0	0	0	0	1	0	0	0	12155	1696	59	5	213	5	PLEKHM2	1	16043237	Missense_Mutation	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09		16043237	233207384	1	45623										
HSPG2	0	genome.wustl.edu	37	chr1	22176924	22176924	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	gaggcacggagctgcccaacActcggcacacgtactcgccc	11	17	0	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	22176924	22176924	A	C	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.7226	p.V2409G	0.751	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	25	0	0	7	7	50	-	-	-	C	22176924	A	C	22176924	3	2	498	1	0	0	0	0	1	0	0	0	7484	159	6	5	6117	5	HSPG2	1	22176924	Missense_Mutation	SNP	A	TCGA-BH-A0BG-01A-11D-A10Y-09	6133687	22176924	227073697	2	45624										
ZNF644	0	genome.wustl.edu	37	chr1	91406655	91406655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	agactggcctccacttaaggCgttttcagatttgtcctttg	9	10	1	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	91406655	91406655	C	T	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.256	p.A86T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	108	0	0	158	47	22.93	-	-	-	T	91406655	C	T	91406655	3	4	498	1	0	0	0	0	1	0	0	0	18156	768	27	1	3743	1	ZNF644	1	91406655	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09	69229731	91406655	157843966	3	45625										
CENPF	0	genome.wustl.edu	37	chr1	214794222	214794222	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	caaatagggaaaagagatgcTaatagcagtttctttgacaa	9	5	1	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	214794222	214794222	T	C	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	silent	c.798	p.A266	0.000	pfam_Centromere_CenpF_N	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	40	0	0	69	76	52.41	-	-	-	C	214794222	T	C	214794222	2	2	498	1	0	0	0	0	0	0	0	1	3260	1509	53	5		5	CENPF	1	214794222	Silent	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	123387567	214794222	34456399	4	45626										
PCNXL2	0	genome.wustl.edu	37	chr1	233397811	233397811	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	caatggcccagaagagtgatGagaggttatgctttgccctc	12	9	0	4			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	233397811	233397811	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.460	p.H154Y	0.322	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	183	0	0	120	21	14.89	-	-	-	A	233397811	G	A	233397811	3	1	498	1	0	0	0	0	1	0	0	0	11665	1290	45	2	6081	2	PCNXL2	1	233397811	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	18603589	233397811	15852810	5	45627										
ACTN2	0	genome.wustl.edu	37	chr1	236918367	236918367	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	caggagccctggaagaccagAtgaaccagctgaagcagtat	12	10	0	4			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	1	236918367	236918367	A	C	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.2023	p.M675L	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	172	0	0	49	10	16.95	-	-	-	C	236918367	A	C	236918367	3	2	498	1	0	0	0	0	1	0	0	0	205	333	12	5	2089	5	ACTN2	1	236918367	Missense_Mutation	SNP	A	TCGA-BH-A0BG-01A-11D-A10Y-09	3520556	236918367	12332254	6	45628										
TTN	0	genome.wustl.edu	37	chr2	179443676	179443676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	ttttctggacagctgaggcgCacgtcacccacttgttgttc	10	12	2	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	2	179443676	179443676	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60377	p.C20126Y	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	101	0	0	54	29	34.52	-	-	-	T	179443676	C	T	179443676	3	4	498	1	0	0	0	0	1	0	0	0	16832	710	25	4	40070	4	TTN	2	179443676	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		179443676	63755697	7	45629										
MYRIP	0	genome.wustl.edu	37	chr3	40291713	40291713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tgtctttctgttgctttaagAtttcagatattgagagccgg	10	6	3	3			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	3	40291713	40291713	A	G	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.2263	p.I755V	1.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	157	0	0	44	53	54.64	-	-	-	G	40291713	A	G	40291713	3	3	498	1	0	0	0	0	1	0	0	0	10172	347	12	5	2313	5	MYRIP	3	40291713	Missense_Mutation	SNP	A	TCGA-BH-A0BG-01A-11D-A10Y-09		40291713	157730717	8	45630										
KLHDC8B	0	genome.wustl.edu	37	chr3	49211701	49211701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tgtatgctctggggggaatgGgccctgacacggccccccag	15	13	1	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	3	49211701	49211701	G	A	SNP	KLHDC8B	ENST00000332780	human	ensembl	69_37n	1	known	missense	c.406	p.G136S	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8B	HGNC	ENSG00000185909	37	0	0	17	19	52.78	-	-	-	A	49211701	G	A	49211701	3	1	498	1	0	0	0	0	1	0	0	0	8416	1232	43	4	412	4	KLHDC8B	3	49211701	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	8919988	49211701	148810729	9	45631										
GTPBP8	0	genome.wustl.edu	37	chr3	112710242	112710242	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	cacagcgctaaccgcttcccTggccgtccggctcgcgggtg	13	17	0	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	3	112710242	112710242	T	C	SNP	GTPBP8	ENST00000471627	human	ensembl	69_37n	1	known	silent	c.396	p.P132	0.000	NULL	NULL	-	no_errors	GTPBP8	HGNC	ENSG00000163607	11	0	0	0	6	100	-	-	-	C	112710242	T	C	112710242	2	2	498	1	0	0	0	0	0	0	0	1	6935	1595	55	5		5	GTPBP8	3	112710242	Silent	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	63498541	112710242	85312188	10	45632										
CDKN2AIP	0	genome.wustl.edu	37	chr4	184367676	184367676	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tttggaaggctcttcagcctCagcttctcaaagcagctcag	9	12	5	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	4	184367676	184367676	C	T	SNP	CDKN2AIP	ENST00000504169	human	ensembl	69_37n	1	known	missense	c.839	p.S280L	0.000	NULL	pfam_DUF3469,pfscan_Ds-RNA-bd	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564	111	0	0	67	17	20.24	-	-	-	T	184367676	C	T	184367676	3	4	498	1	0	0	0	0	1	0	0	0	3191	838	29	2	849	2	CDKN2AIP	4	184367676	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		184367676	6786600	11	45633										
CHSY3	0	genome.wustl.edu	37	chr5	129520027	129520027	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	taacacttcatcccaacaaaAggcctgcataccaatacagg	5	13	1	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	5	129520027	129520027	A	T	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	missense	c.1192	p.R398W	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	107	0	0	18	29	60.42	-	-	-	T	129520027	A	T	129520027	3	4	498	1	0	0	0	0	1	0	0	0	3442	63	3	5	1202	5	CHSY3	5	129520027	Missense_Mutation	SNP	A	TCGA-BH-A0BG-01A-11D-A10Y-09		129520027	51395233	12	45634										
SAP25	0	genome.wustl.edu	37	chr7	100170027	100170027	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tctggggggccaaccgcggaGgagctgggcctaggctcccc	17	14	1	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	7	100170027	100170027	G	C	SNP	SAP25	ENST00000538735	human	ensembl	69_37n	-1	known	silent	c.483	p.S161	0.000	NULL	NULL	-	no_errors	SAP25	HGNC	ENSG00000205307	22	0	0	14	4	22.22	-	-	-	C	100170027	G	C	100170027	2	2	498	1	0	0	0	0	0	0	0	1	13919	987	35	4		4	SAP25	7	100170027	Silent	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09		100170027	58968636	13	45635										
LAMB4	0	genome.wustl.edu	37	chr7	107732103	107732103	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tccttggagtgttgtggcttCctctgcctcgtagagataga	12	9	1	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	7	107732103	107732103	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.1669	p.E557K	1.000	smart_EGF_laminin,pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	64	0	0	46	12	20.69	-	-	-	T	107732103	C	T	107732103	3	4	498	1	0	0	0	0	1	0	0	0	8667	864	30	2	3700	2	LAMB4	7	107732103	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09	7562076	107732103	51406560	14	45636										
FAM3C	0	genome.wustl.edu	37	chr7	121018965	121018965	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	ggaaaaaaataaaacttaccAaatagatttcctaaacttgc	4	7	0	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	7	121018965	121018965	A	C	SNP	FAM3C	ENST00000359943	human	ensembl	69_37n	-1	known	missense	c.117	p.F39L	1.000	NULL	NULL	-	no_errors	FAM3C	HGNC	ENSG00000196937	28	0	0	62	25	28.74	-	-	-	C	121018965	A	C	121018965	3	2	498	1	0	0	0	0	1	0	0	0	5604	144	5	5	598	5	FAM3C	7	121018965	Missense_Mutation	SNP	A	TCGA-BH-A0BG-01A-11D-A10Y-09	13286862	121018965	38119698	15	45637										
XKR4	0	genome.wustl.edu	37	chr8	56435907	56435907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tcctaccagaaggccctccgGgactctcgagatgacaagaa	10	13	1	4			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	8	56435907	56435907	G	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	silent	c.1074	p.R358	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	297	1	0.33	43	26	37.68	-	-	-	A	56435907	G	A	56435907	2	1	498	1	0	0	0	0	0	0	0	1	17530	1219	43	4		4	XKR4	8	56435907	Silent	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09		56435907	89928115	16	45638										
KHDRBS3	0	genome.wustl.edu	37	chr8	136619254	136619254	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	cagagttatgattcctatgaTaacagctatagcaccccagc	7	11	0	3			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	8	136619254	136619254	T	A	SNP	KHDRBS3	ENST00000355849	human	ensembl	69_37n	1	known	missense	c.864	p.D288E	1.000	NULL	smart_KH_dom	-	no_errors	KHDRBS3	HGNC	ENSG00000131773	158	0	0	440	57	11.45	-	-	-	A	136619254	T	A	136619254	3	1	498	1	0	0	0	0	1	0	0	0	8200	1403	49	5	890	5	KHDRBS3	8	136619254	Missense_Mutation	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	80183347	136619254	9744768	17	45639										
KDM4C	0	genome.wustl.edu	37	chr9	7011799	7011799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	cgaagtcccctaacttcgcaGctgagcaagagtataatgca	9	11	0	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	9	7011799	7011799	G	T	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.1888	p.A630S	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	83	0	0	18	32	64	-	-	-	T	7011799	G	T	7011799	3	4	498	1	0	0	0	0	1	0	0	0	8184	971	34	4	2004	4	KDM4C	9	7011799	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09		7011799	134201632	18	45640										
CEL	0	genome.wustl.edu	37	chr9	135944195	135944195	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	aacatggacggccacatcttCgccagcatcgacatgcctgc	9	15	1	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	9	135944195	135944195	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	silent	c.1041	p.F347	0.979	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	97	0	0	11	3	21.43	-	-	-	T	135944195	C	T	135944195	2	4	498	1	0	0	0	0	0	0	0	1	3238	883	31	1		1	CEL	9	135944195	Silent	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09	128932396	135944195	5269236	19	45641										
FAM171A1	0	genome.wustl.edu	37	chr10	15256057	15256057	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tcctgaatggtgagtttgctTcccgtggaggctggaccttc	13	10	0	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	10	15256057	15256057	T	C	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	silent	c.1530	p.G510	0.959	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	53	0	0	37	17	31.48	-	-	-	C	15256057	T	C	15256057	2	2	498	1	0	0	0	0	0	0	0	1	5530	1770	62	5		5	FAM171A1	10	15256057	Silent	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09		15256057	120278690	20	45642										
FAM22D	0	genome.wustl.edu	37	chr10	89124862	89124862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	agaaacaacgggaagagggcGaagtgaagcagccacaggaa	15	7	0	3			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	10	89124862	89124862	G	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1420	p.E474K	0.000	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	10	0	0	2	6	75	-	-	-	A	89124862	G	A	89124862	3	1	498	1	0	0	0	0	1	0	0	0	5586	1059	37	1	1438	1	FAM22D	10	89124862	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	73868805	89124862	46409885	21	45643										
C11orf16	0	genome.wustl.edu	37	chr11	8950998	8950998	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tgctaggacccatgtgttggCagcatctccagctcttccca	9	14	2	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	11	8950998	8950998	C	A	SNP	C11orf16	ENST00000326053	human	ensembl	69_37n	-1	known	missense	c.250	p.A84S	0.020	NULL	NULL	-	no_errors	C11orf16	HGNC	ENSG00000176029	203	0	0	67	16	19.28	-	-	-	A	8950998	C	A	8950998	3	1	498	1	0	0	0	0	1	0	0	0	1641	710	25	4	1169	4	C11orf16	11	8950998	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		8950998	126055518	22	45644										
OR4P4	0	genome.wustl.edu	37	chr11	55406228	55406228	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	caagcccctgcactacaccaTtattatgagcaggcaaaagt	7	12	0	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	11	55406228	55406228	T	A	SNP	OR4P4	ENST00000314612	human	ensembl	69_37n	1	known	missense	c.395	p.I132N	0.035	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4P4	HGNC	ENSG00000181927	117	0	0	114	19	14.29	-	-	-	A	55406228	T	A	55406228	3	1	498	1	0	0	0	0	1	0	0	0	11153	1493	52	5	397	5	OR4P4	11	55406228	Missense_Mutation	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	46455230	55406228	79600288	23	45645										
CHRM1	0	genome.wustl.edu	37	chr11	62677587	62677587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	gatcacgccctttcttagtcGgcctcttgactgtatttggg	10	11	3	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	11	62677587	62677587	G	C	SNP	CHRM1	ENST00000306960	human	ensembl	69_37n	-1	known	missense	c.986	p.P329R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Musac_M1_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CHRM1	HGNC	ENSG00000168539	27	0	0	18	4	18.18	-	-	-	C	62677587	G	C	62677587	3	2	498	1	0	0	0	0	1	0	0	0	3405	1116	39	3	400	3	CHRM1	11	62677587	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	7271359	62677587	72328929	24	45646										
SLC37A2	0	genome.wustl.edu	37	chr11	124947362	124947362	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tcagacaaggacaactataaGgagttactagggggcgtgga	14	6	1	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	11	124947362	124947362	G	C	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	missense	c.252	p.K84N	0.998	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	92	0	0	21	26	55.32	-	-	-	C	124947362	G	C	124947362	3	2	498	1	0	0	0	0	1	0	0	0	14687	991	35	4	266	4	SLC37A2	11	124947362	Missense_Mutation	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	62269775	124947362	10059154	25	45647										
XPO4	0	genome.wustl.edu	37	chr13	21382693	21382693	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tgtcgttgtaactgaccatgGagtcttgttactctttcttc	8	9	3	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	13	21382693	21382693	G	C	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	silent	c.1521	p.L507	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	82	0	0	91	49	35	-	-	-	C	21382693	G	C	21382693	2	2	498	1	0	0	0	0	0	0	0	1	17543	1161	41	2		2	XPO4	13	21382693	Silent	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09		21382693	93787185	26	45648										
DIAPH3	0	genome.wustl.edu	37	chr13	60240935	60240935	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	ttgttgagttgcaattgataTtgtagtgtgaacgtgaccct	11	5	0	4			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	13	60240935	60240935	T	C	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	missense	c.3365	p.N1122S	0.933	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	89	0	0	96	62	39.24	-	-	-	C	60240935	T	C	60240935	3	2	498	1	0	0	0	0	1	0	0	0	4556	1493	52	5	220	5	DIAPH3	13	60240935	Missense_Mutation	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	38858242	60240935	54928943	27	45649										
SMG1	0	genome.wustl.edu	37	chr16	18872050	18872050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tctcctggtaacaattctaaCtgctcggtacattcaacaaa	5	11	3	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	16	18872050	18872050	C	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	silent	c.3744	p.Q1248	0.981	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	12	0	0	98	92	48.42	-	-	-	T	18872050	C	T	18872050	2	4	498	1	0	0	0	0	0	0	0	1	14884	564	20	4		4	SMG1	16	18872050	Silent	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		18872050	71482703	28	45650										
FBXO39	0	genome.wustl.edu	37	chr17	6684022	6684022	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	cctgggccaagctggccaggCaggccaccaatctgaaggtg	14	13	1	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	17	6684022	6684022	C	A	SNP	FBXO39	ENST00000321535	human	ensembl	69_37n	1	known	missense	c.835	p.Q279K	0.997	NULL	NULL	-	no_errors	FBXO39	HGNC	ENSG00000177294	78	0	0	25	7	21.88	-	-	-	A	6684022	C	A	6684022	3	1	498	1	0	0	0	0	1	0	0	0	5793	711	25	4	837	4	FBXO39	17	6684022	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		6684022	74511188	29	45651										
TP53	0	genome.wustl.edu	37	chr17	7578246	7578247	+	Frame_Shift_Ins	INS	-	-	A													0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	catccaaatactccacacgcINSaaatttccttccactcggat							TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	17	7578246	7578247	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.603_602	p.L201fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	181	0	0	56	76	57.58	-	-	-	A	7578247	-	A	7578246	7	5	498	1	0	1	1	0	0	0	0	0	16477	709	25	0	691	0	TP53	17	7578246	Frame_Shift_Ins	INS	-	TCGA-BH-A0BG-01A-11D-A10Y-09	894224	7578246	73616964	30	45652										
PMP22	0	genome.wustl.edu	37	chr17	15134333	15134333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	gcgaaaccgtaggagtaatcCgagttgagatgccactccgg	13	10	0	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	17	15134333	15134333	C	T	SNP	PMP22	ENST00000494511	human	ensembl	69_37n	-1	novel	missense	c.205	p.G69R	0.000	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099	34	0	0	5	16	76.19	-	-	-	T	15134333	C	T	15134333	3	4	498	1	0	0	0	0	1	0	0	0	12213	639	23	1	102	1	PMP22	17	15134333	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09	7556087	15134333	66060877	31	45653										
MED24	0	genome.wustl.edu	37	chr17	38187823	38187823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tcagctttgtccaacaagggGgtgagcttcagcaggaactc	12	10	2	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	17	38187823	38187823	G	A	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	silent	c.1035	p.T345	0.018	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	42	0	0	14	27	65.85	-	-	-	A	38187823	G	A	38187823	2	1	498	1	0	0	0	0	0	0	0	1	9513	1219	43	4		4	MED24	17	38187823	Silent	SNP	G	TCGA-BH-A0BG-01A-11D-A10Y-09	23053490	38187823	43007387	32	45654										
ZNF254	0	genome.wustl.edu	37	chr19	24310770	24310770	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	ataactcattggagagaaatCttacaagtatgaataatgtg	8	4	2	2			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	19	24310770	24310770	C	G	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.1968	p.I656M	0.134	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	25	0	0	20	13	39.39	-	-	-	G	24310770	C	G	24310770	3	3	498	1	0	0	0	0	1	0	0	0	17894	903	32	2	1982	2	ZNF254	19	24310770	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		24310770	34818213	33	45655										
CGB7	0	genome.wustl.edu	37	chr19	49557572	49557572	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	tgtgggaggatcggggtgtcTgagggccccgggagtcggga	22	7	1	1			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	19	49557572	49557572	T	C	SNP	CGB7	ENST00000377280	human	ensembl	69_37n	-1	known	silent	c.474	p.S158	0.123	NULL	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB7	HGNC	ENSG00000196337	17	0	0	37	10	21.28	-	-	-	C	49557572	T	C	49557572	2	2	498	1	0	0	0	0	0	0	0	1	3329	1567	55	5		5	CGB7	19	49557572	Silent	SNP	T	TCGA-BH-A0BG-01A-11D-A10Y-09	25246802	49557572	9571411	34	45656										
TRAPPC10	0	genome.wustl.edu	37	chr21	45479068	45479068	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	aactggacgccctcttctctCagtatgtggtcaacttcggg	10	12	4	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	21	45479068	45479068	C	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	nonsense	c.763	p.Q255*	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	62	0	0	16	8	33.33	-	-	-	T	45479068	C	T	45479068	4	4	498	1	0	0	0	0	0	1	0	0	16553	827	29	2	785	2	TRAPPC10	21	45479068	Nonsense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		45479068	2650827	35	45657										
FAM120C	0	genome.wustl.edu	37	chrX	54099576	54099576	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	attattacactcattgctgtCtctggataaggcacattgtg	8	8	2	0			TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	X	54099576	54099576	C	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.3181	p.D1061H	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	126	0	0	69	70	50.36	-	-	-	G	54099576	C	G	54099576	3	3	498	1	0	0	0	0	1	0	0	0	5458	913	32	2	113	2	FAM120C	23	54099576	Missense_Mutation	SNP	C	TCGA-BH-A0BG-01A-11D-A10Y-09		54099576	101170984	36	45658										
RBMX	0	genome.wustl.edu	37	chrX	135956571	135956572	+	Frame_Shift_Ins	INS	-	-	GG													0.135135135135135	5	0.258372157000222	2.11098398169336	2.67391304347826	1.85117056856187	1	1	0	gactgcttccaccataagatINSggcgggggccctcgtgtagg							TCGA-BH-A0BG-01A-11D-A10Y-09	TCGA-BH-A0BG-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	923ee16a-2c42-46ee-b2cb-82075f2dd603	483a4feb-931f-40f8-964d-29104030ebe7	X	135956571	135956572	-	GG	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.906_905	p.S303fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	66	0	0	26	4	13.33	-	-	-	GG	135956572	-	GG	135956571	7	5	498	1	0	1	1	0	0	0	0	0	13234	1451	51	0	328	0	RBMX	23	135956571	Frame_Shift_Ins	INS	-	TCGA-BH-A0BG-01A-11D-A10Y-09	81856995	135956571	19313989	37	45659										
CLCA2	0	genome.wustl.edu	37	chr1	86904570	86904570	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gggacataggctgacagactCcttcaactacaacaagccgc	9	13	1	2			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	1	86904570	86904570	C	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	silent	c.984	p.L328	0.788	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	254	0	0	199	33	14.22	-	-	-	A	86904570	C	A	86904570	2	1	499	1	0	0	0	0	0	0	0	1	3488	842	30	2		2	CLCA2	1	86904570	Silent	SNP	C	TCGA-BH-A0BJ-01A-11W-A071-09		86904570	162346051	1	45660										
MYCN	0	genome.wustl.edu	37	chr2	16082313	16082314	+	Frame_Shift_Ins	INS	-	-	C													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cttcggcggccccgactcgaINScccccccgggggaggacatc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	2	16082313	16082314	-	C	INS	MYCN	ENST00000281043	human	ensembl	69_37n	1	known	frame_shift_ins	c.127_128	p.G47fs	1.000:1.000	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323	19	0	0	4	2	33.33	-	-	-	C	16082314	-	C	16082313	7	5	499	1	0	1	1	0	0	0	0	0	10093	275	10	0	129	0	MYCN	2	16082313	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		16082313	227117060	2	45661										
TET3	0	genome.wustl.edu	37	chr2	74328777	74328777	+	Frame_Shift_Del	DEL	C	C	-													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ggagccccccagcaagggagCggtgaaggaggagaagggcg							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	2	74328777	74328777	C	-	DEL	TET3	ENST00000409262	human	ensembl	69_37n	1	known	frame_shift_del	c.4457	p.A1486fs	0.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	52	0	0	23	16	40	-	-	-	-	74328777	C	-	74328777	7	5	499	1	0	1	0	1	0	0	0	0	15866	768	27	0	4491	0	TET3	2	74328777	Frame_Shift_Del	DEL	C	TCGA-BH-A0BJ-01A-11W-A071-09	58246464	74328777	168870596	3	45662										
DNAJB3	0	genome.wustl.edu	37	chr2	234652187	234652188	+	RNA	INS	-	-	C													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ttccccagcagttcctctgaINScccccccaaaatattctcca							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	2	234652187	234652188	-	C	INS	DNAJB3	ENST00000449667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.050:0.014	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	66	0	0	44	5	10.2	-	-	-	C	234652188	-	C	234652187	6	5	499	0	1	1	1	0	0	0	0	0	4656	275	10	0		0	DNAJB3	2	234652187	RNA	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09	160323410	234652187	8547186	4	45663										
CNTN4	0	genome.wustl.edu	37	chr3	3084016	3084016	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cccaccaaaccaccagccagTatctttgccagaagtctttc	5	16	2	1			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	3	3084016	3084016	T	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	silent	c.2421	p.S807	0.929	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	151	0	0	114	21	15.56	-	-	-	C	3084016	T	C	3084016	2	2	499	1	0	0	0	0	0	0	0	1	3673	1635	57	5		5	CNTN4	3	3084016	Silent	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09		3084016	194938414	5	45664										
BHLHE40	0	genome.wustl.edu	37	chr3	5022090	5022091	+	Frame_Shift_Ins	INS	-	-	A													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	tacccgaacatctcaaacttINSacagtaagtgagaagctggc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	3	5022090	5022091	-	A	INS	BHLHE40	ENST00000256495	human	ensembl	69_37n	1	known	frame_shift_ins	c.255_256	p.T85fs	1.000:1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	BHLHE40	HGNC	ENSG00000134107	47	0	0	12	3	20	-	-	-	A	5022091	-	A	5022090	7	5	499	1	0	1	1	0	0	0	0	0	1428	1741	61	0	265	0	BHLHE40	3	5022090	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09	1938074	5022090	193000340	6	45665										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	117	0	0	104	14	11.86	-	-	-	A	178921553	T	A	178921553	3	1	499	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09	173899463	178921553	19100877	7	45666										
STARD4	0	genome.wustl.edu	37	chr5	110835685	110835685	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cccacgcagatctgtctgaaTatatcctgtcaaaagactct	6	12	4	3			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	5	110835685	110835685	T	C	SNP	STARD4	ENST00000296632	human	ensembl	69_37n	-1	known	missense	c.517	p.I173V	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD4	HGNC	ENSG00000164211	152	0	0	89	38	29.92	-	-	-	C	110835685	T	C	110835685	3	2	499	1	0	0	0	0	1	0	0	0	15350	1406	49	5	104	5	STARD4	5	110835685	Missense_Mutation	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09		110835685	70079575	8	45667										
ACTR3B	0	genome.wustl.edu	37	chr7	152550654	152550654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ggttcggaggctccatgctgGcctcgactgtaagtccctct	12	13	1	0			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	7	152550654	152550654	G	A	SNP	ACTR3B	ENST00000256001	human	ensembl	69_37n	1	known	missense	c.1153	p.A385T	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR3B	HGNC	ENSG00000133627	24	0	0	12	5	29.41	-	-	-	A	152550654	G	A	152550654	3	1	499	1	0	0	0	0	1	0	0	0	213	1203	42	4	1195	4	ACTR3B	7	152550654	Missense_Mutation	SNP	G	TCGA-BH-A0BJ-01A-11W-A071-09		152550654	6588009	9	45668										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69421946	69421946	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gaaaggaaagagaaacaataTaagaaagaagttgaagcaaa	10	2	0	4			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-11A-23W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	9fb162fe-879e-454a-a2ce-f1471ecaf3f7	9	69421946	69421946	T	C	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	silent	c.1410	p.Y470	0.129	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	8	0	0	11	7	38.89	-	-	-	C	69421946	T	C	69421946	2	2	499	1	0	0	0	0	0	0	0	1	650	1413	49	5		5	ANKRD20A4	9	69421946	Silent	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09		69421946	71791485	10	45669										
CREM	0	genome.wustl.edu	37	chr10	35500300	35500300	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	aggaactcaaggccctcaaaGatctttattgccataaagta	7	9	3	1			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	10	35500300	35500300	G	T	SNP	CREM	ENST00000333809	human	ensembl	69_37n	1	known	missense	c.1021	p.D341Y	1.000	pfam_bZIP_1,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREM	HGNC	ENSG00000095794	79	0	0	73	10	12.05	-	-	-	T	35500300	G	T	35500300	3	4	499	1	0	0	0	0	1	0	0	0	3898	942	33	2	1152	2	CREM	10	35500300	Missense_Mutation	SNP	G	TCGA-BH-A0BJ-01A-11W-A071-09		35500300	100034447	11	45670										
LZTS2	0	genome.wustl.edu	37	chr10	102766351	102766352	+	Frame_Shift_Ins	INS	-	-	T													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gctctgcgggtggcgctgcgINSggaggcccgtgctacgctgc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	10	102766351	102766352	-	T	INS	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	frame_shift_ins	c.1436_1437	p.E480fs	0.992:0.983	pfam_Fez1	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	10	0	0	4	2	33.33	-	-	-	T	102766352	-	T	102766351	7	5	499	1	0	1	1	0	0	0	0	0	9206	1116	39	0	1450	0	LZTS2	10	102766351	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09	67266051	102766351	32768396	12	45671										
SLC5A12	0	genome.wustl.edu	37	chr11	26720081	26720081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cagcaagttaaaatacaaggCactagaaaagagcacatggg	10	7	0	2			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	26720081	26720081	C	T	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.823	p.A275T	0.999	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	196	1	0.51	161	24	12.9	-	-	-	T	26720081	C	T	26720081	3	4	499	1	0	0	0	0	1	0	0	0	14753	724	25	4	1069	4	SLC5A12	11	26720081	Missense_Mutation	SNP	C	TCGA-BH-A0BJ-01A-11W-A071-09		26720081	108286435	13	45672										
APOA5	0	genome.wustl.edu	37	chr11	116660880	116660881	+	In_Frame_Ins	INS	-	-	AGG													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ggctgtggccctggtcatgaINSaggctgtgagtgatgtcttc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	116660880	116660881	-	AGG	INS	APOA5	ENST00000227665	human	ensembl	69_37n	-1	known	in_frame_ins	c.1065_1064	p.356in_frame_insL	0.726:0.838	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243	17	0	0	22	6	21.43	-	-	-	AGG	116660881	-	AGG	116660880	7	5	499	1	0	1	1	0	0	0	0	0	786	233	9	0	39	0	APOA5	11	116660880	In_Frame_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09	89940799	116660880	18345636	14	45673										
OR10G9	0	genome.wustl.edu	37	chr11	123894588	123894588	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	ccctgttgtgtacaccctgaGaaacaaggaggtgaagaaag	12	8	0	3			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	123894588	123894588	G	A	SNP	OR10G9	ENST00000375024	human	ensembl	69_37n	1	known	missense	c.869	p.R290K	1.000	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981	212	0	0	196	58	22.83	-	-	-	A	123894588	G	A	123894588	3	1	499	1	0	0	0	0	1	0	0	0	10977	942	33	2	871	2	OR10G9	11	123894588	Missense_Mutation	SNP	G	TCGA-BH-A0BJ-01A-11W-A071-09	7233708	123894588	11111928	15	45674										
NACA	0	genome.wustl.edu	37	chr12	57111533	57111534	+	Frame_Shift_Ins	INS	-	-	G													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gggggagtgggggcccctttINSggggggtggggtagctgggc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	12	57111533	57111534	-	G	INS	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3781_3780	p.K1260fs	0.000:0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	10	0	0	4	2	33.33	-	-	-	G	57111534	-	G	57111533	7	5	499	1	0	1	1	0	0	0	0	0	10205	1821	63	0	2483	0	NACA	12	57111533	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		57111533	76740362	16	45675										
FREM2	0	genome.wustl.edu	37	chr13	39266380	39266380	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gacttctatgtttttcctgaTacggtgtttgaaacaaggag	10	6	1	2			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	13	39266380	39266380	T	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.4899	p.D1633E	0.986	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	159	0	0	79	41	34.17	-	-	-	A	39266380	T	A	39266380	3	1	499	1	0	0	0	0	1	0	0	0	6094	1403	49	5	4901	5	FREM2	13	39266380	Missense_Mutation	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09		39266380	75903498	17	45676										
TAOK2	0	genome.wustl.edu	37	chr16	29998787	29998788	+	Frame_Shift_Ins	INS	-	-	G													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cctctggtggctatggcagcINSggggggcagatgggtgcggc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	16	29998787	29998788	-	G	INS	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	frame_shift_ins	c.3194_3195	p.R1068fs	1.000:0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	39	0	0	26	4	13.33	-	-	-	G	29998788	-	G	29998787	7	5	499	1	0	1	1	0	0	0	0	0	15640	768	27	0	3252	0	TAOK2	16	29998787	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		29998787	60355966	18	45677										
CBX1	0	genome.wustl.edu	37	chr17	46152423	46152423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	tgtagctccaataatccgctCcggctccaaacctcgagcaa	7	15	0	0			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	17	46152423	46152423	C	T	SNP	CBX1	ENST00000225603	human	ensembl	69_37n	-1	known	missense	c.358	p.E120K	1.000	pfam_Chromo_shadow_dom,superfamily_Chromodomain-like,smart_Chromo_shadow_dom,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX1	HGNC	ENSG00000108468	320	0	0	348	44	11.2	-	-	-	T	46152423	C	T	46152423	3	4	499	1	0	0	0	0	1	0	0	0	2742	864	30	2	207	2	CBX1	17	46152423	Missense_Mutation	SNP	C	TCGA-BH-A0BJ-01A-11W-A071-09		46152423	35042787	19	45678										
SLC35B1	0	genome.wustl.edu	37	chr17	47780313	47780313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	aattgtgaagaactttcgagTtgtagtgatgatggagcagg	14	3	0	4			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	17	47780313	47780313	T	C	SNP	SLC35B1	ENST00000415270	human	ensembl	69_37n	-1	known	missense	c.934	p.T312A	1.000	pfam_UAA,pfam_DMT,pfam_DUF250	pfam_UAA,pfam_DMT,pfam_DUF250	-	no_errors	SLC35B1	HGNC	ENSG00000121073	115	0	0	90	15	14.29	-	-	-	C	47780313	T	C	47780313	3	2	499	1	0	0	0	0	1	0	0	0	14664	1725	60	5	153	5	SLC35B1	17	47780313	Missense_Mutation	SNP	T	TCGA-BH-A0BJ-01A-11W-A071-09	1627890	47780313	33414897	20	45679										
FBN3	0	genome.wustl.edu	37	chr19	8193948	8193949	+	Frame_Shift_Ins	INS	-	-	G													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	tcctgccagaagtggaagccINSgggggggcaggagcagctgt							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	19	8193948	8193949	-	G	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2260_2259	p.G753fs	1.000:0.646	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	20	0	0	24	3	11.11	-	-	-	G	8193949	-	G	8193948	7	5	499	1	0	1	1	0	0	0	0	0	5750	652	23	0	6357	0	FBN3	19	8193948	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		8193948	50935035	21	45680										
C19orf57	0	genome.wustl.edu	37	chr19	14000926	14000926	+	Frame_Shift_Del	DEL	T	T	-													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cctcctggggggctcctctgTctggcttctccccttcagaa							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	19	14000926	14000926	T	-	DEL	C19orf57	ENST00000454313	human	ensembl	69_37n	-1	known	frame_shift_del	c.743	p.D248fs	0.022	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016	41	0	0	35	202	82.45	-	-	-	-	14000926	T	-	14000926	7	5	499	1	0	1	0	1	0	0	0	0	1957	1667	58	0	1182	0	C19orf57	19	14000926	Frame_Shift_Del	DEL	T	TCGA-BH-A0BJ-01A-11W-A071-09	5806978	14000926	45128057	22	45681										
IL27RA	0	genome.wustl.edu	37	chr19	14162703	14162704	+	Frame_Shift_Ins	INS	-	-	GC													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cttgccaggtgctaccacctINSaaggcacaaagtgctgcccc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	19	14162703	14162704	-	GC	INS	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	frame_shift_ins	c.1634_1635	p.R546fs	0.083:0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	43	0	0	33	13	28.26	-	-	-	GC	14162704	-	GC	14162703	7	5	499	1	0	1	1	0	0	0	0	0	7735	1522	53	0	1684	0	IL27RA	19	14162703	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09	161777	14162703	44966280	23	45682										
CEP250	0	genome.wustl.edu	37	chr20	34078523	34078524	+	Frame_Shift_Ins	INS	-	-	A													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	tctggagagcttagaaagggINSaaaaaatggagctggaaatg							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	20	34078523	34078524	-	A	INS	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	frame_shift_ins	c.2647_2648	p.M885fs	0.960:0.967	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	41	0	0	54	7	11.48	-	-	-	A	34078524	-	A	34078523	7	5	499	1	0	1	1	0	0	0	0	0	3281	1175	41	0	2717	0	CEP250	20	34078523	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		34078523	28946997	24	45683										
DIP2A	0	genome.wustl.edu	37	chr21	47978305	47978306	+	Frame_Shift_Ins	INS	-	-	G													0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	aacgtggccatctgcctccaINSggtgaggtgcctggggctgc							TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	21	47978305	47978306	-	G	INS	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	frame_shift_ins	c.3971_3972	p.T1326fs	1.000:1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	8	0	0	5	3	37.5	-	-	-	G	47978306	-	G	47978305	7	5	499	1	0	1	1	0	0	0	0	0	4563	202	7	0	4207	0	DIP2A	21	47978305	Frame_Shift_Ins	INS	-	TCGA-BH-A0BJ-01A-11W-A071-09		47978305	151590	25	45684										
HPS4	0	genome.wustl.edu	37	chr22	26860722	26860722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	agtggcgttttctttcagggCagatgtgctcccaccctttg	11	11	2	1			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	22	26860722	26860722	C	A	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	missense	c.913	p.A305S	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	64	0	0	43	12	21.82	-	-	-	A	26860722	C	A	26860722	3	1	499	1	0	0	0	0	1	0	0	0	7392	710	25	4	1268	4	HPS4	22	26860722	Missense_Mutation	SNP	C	TCGA-BH-A0BJ-01A-11W-A071-09		26860722	24443844	26	45685										
PTCHD1	0	genome.wustl.edu	37	chrX	23398006	23398006	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	gctcacctactacctgcagtCaatcaacagtctcaatgaca	5	14	4	1			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	X	23398006	23398006	C	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	nonsense	c.650	p.S217*	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	275	0	0	237	37	13.5	-	-	-	A	23398006	C	A	23398006	4	1	499	1	0	0	0	0	0	1	0	0	12812	838	29	2	656	2	PTCHD1	23	23398006	Nonsense_Mutation	SNP	C	TCGA-BH-A0BJ-01A-11W-A071-09		23398006	131872554	27	45686										
OPN1LW	0	genome.wustl.edu	37	chrX	153421964	153421964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0357142857142857	1	0.886570581706557	1.2304347826087	NA	1.2304347826087	1	1	0	cggcctactttgccaaaagtGccactatctacaaccccgtt	6	15	1	0			TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	X	153421964	153421964	G	A	SNP	OPN1LW	ENST00000369951	human	ensembl	69_37n	1	known	missense	c.940	p.A314T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076	228	0	0	238	34	12.5	-	-	-	A	153421964	G	A	153421964	3	1	499	1	0	0	0	0	1	0	0	0	10950	1319	46	4	958	4	OPN1LW	23	153421964	Missense_Mutation	SNP	G	TCGA-BH-A0BJ-01A-11W-A071-09	130023958	153421964	1848596	28	45687										
FBXO44	0	genome.wustl.edu	37	chr1	11718332	11718332	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttttccatcagaggggttcGagttctggagcctggatgtg	14	8	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	11718332	11718332	G	T	SNP	FBXO44	ENST00000376768	human	ensembl	69_37n	1	known	nonsense	c.274	p.E92*	0.867	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879	305	0	0	117	51	30.36	-	-	-	T	11718332	G	T	11718332	4	4	500	1	0	0	0	0	0	1	0	0	5799	1059	37	3	280	3	FBXO44	1	11718332	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		11718332	237532289	1	45688										
PLA2G2E	0	genome.wustl.edu	37	chr1	20250034	20250034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggaggcaaaggaacaccaGcacgtggggagatttcatcc	13	10	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	20250034	20250034	G	T	SNP	PLA2G2E	ENST00000375116	human	ensembl	69_37n	-1	known	missense	c.19	p.L7M	0.000	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2E	HGNC	ENSG00000188784	227	0	0	79	27	25.47	-	-	-	T	20250034	G	T	20250034	3	4	500	1	0	0	0	0	1	0	0	0	12072	962	34	4	425	4	PLA2G2E	1	20250034	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	8531702	20250034	229000587	2	45689										
TCTEX1D1	0	genome.wustl.edu	37	chr1	67242936	67242936	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttttttaaatttctaggtTattaaagcccaggtcaagga	7	6	2	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	67242936	67242936	T	G	SNP	TCTEX1D1	ENST00000282670	human	ensembl	69_37n	1	known	silent	c.339	p.V113	0.969	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D1	HGNC	ENSG00000152760	150	0	0	116	16	12.12	-	-	-	G	67242936	T	G	67242936	2	3	500	1	0	0	0	0	0	0	0	1	15814	1741	61	5		5	TCTEX1D1	1	67242936	Silent	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	46992902	67242936	182007685	3	45690										
PRPF3	0	genome.wustl.edu	37	chr1	150325444	150325444	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgagtgaatctgtgttagagTccactgattgagactactgc	11	7	1	5			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	150325444	150325444	T	A	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	missense	c.2041	p.S681T	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	PRPF3	HGNC	ENSG00000117360	217	0	0	126	33	20.75	-	-	-	A	150325444	T	A	150325444	3	1	500	1	0	0	0	0	1	0	0	0	12646	1667	58	5	2099	5	PRPF3	1	150325444	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	83082508	150325444	98925177	4	45691										
FLVCR1	0	genome.wustl.edu	37	chr1	213058714	213058714	+	Nonsense_Mutation	SNP	G	G	A													0	0	1	0	0	0	1	1	0	ctctattctttgtggcttatGgctggattatactaaaacat							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	213058714	213058714	G	A	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	1	known	nonsense	c.1172	p.W391*	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	573	0	0	351	99	22	-	-	-	A	213058714	G	A	213058714	4	1	500	1	0	0	0	0	0	1	0	0	5991	1357	47	4	1190	4	FLVCR1	1	213058714	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	62733270	213058714	36191907	5	45692	377	2								
FLVCR1	0	genome.wustl.edu	37	chr1	213058715	213058715	+	Missense_Mutation	SNP	G	G	T													0	0	1	0	0	0	1	1	0	tctattctttgtggcttatgGctggattatactaaaacata							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	213058715	213058715	G	T	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	1	known	missense	c.1173	p.W391C	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	566	0	0	345	98	22.12	-	-	-	T	213058715	G	T	213058715	3	4	500	1	0	0	0	0	1	0	0	0	5991	1212	42	4	1191	4	FLVCR1	1	213058715	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	1	213058715	36191906	6	45693	377	2								
RYR2	0	genome.wustl.edu	37	chr1	237889592	237889592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagtctaaacgtgtgggtcGgagacattactgtctgggaa	14	6	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	1	237889592	237889592	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.10703	p.R3568Q	0.019	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	255	2	0.78	218	151	40.92	-	-	-	A	237889592	G	A	237889592	3	1	500	1	0	0	0	0	1	0	0	0	13855	1116	39	1	11007	1	RYR2	1	237889592	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	24830877	237889592	11361029	7	45694										
SEMA4F	0	genome.wustl.edu	37	chr2	74884993	74884993	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccccaggacgaatgtcacaAttttgtccagattctcgcca	7	14	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	2	74884993	74884993	A	G	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.371	p.N124S	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	574	0	0	191	31	13.96	-	-	-	G	74884993	A	G	74884993	3	3	500	1	0	0	0	0	1	0	0	0	14123	101	4	5	385	5	SEMA4F	2	74884993	Missense_Mutation	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09		74884993	168314380	8	45695										
RGPD4	0	genome.wustl.edu	37	chr2	108479240	108479240	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctataaaaatggttctttgCgaaatgcggattcagaaata	8	5	3	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	2	108479240	108479240	C	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	nonsense	c.2308	p.R770*	0.592	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	262	0	0	207	172	45.38	-	-	-	T	108479240	C	T	108479240	4	4	500	1	0	0	0	0	0	1	0	0	13371	760	27	1	2370	1	RGPD4	2	108479240	Nonsense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	33594247	108479240	134720133	9	45696										
MYO1B	0	genome.wustl.edu	37	chr2	192225417	192225417	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgaaagaaacttccatgtgtTctatcagctgctctctggtg	9	9	3	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	2	192225417	192225417	T	G	SNP	MYO1B	ENST00000304164	human	ensembl	69_37n	1	known	missense	c.623	p.F208C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	552	1	0.18	293	81	21.66	-	-	-	G	192225417	T	G	192225417	3	3	500	1	0	0	0	0	1	0	0	0	10141	1783	62	5	649	5	MYO1B	2	192225417	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	83746177	192225417	50973956	10	45697										
ACSL3	0	genome.wustl.edu	37	chr2	223806218	223806218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttttaatcatcttagcaaGtctggaaaagtttgaaattc	6	5	3	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	2	223806218	223806218	G	A	SNP	ACSL3	ENST00000357430	human	ensembl	69_37n	1	known	missense	c.2009	p.S670N	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983	109	0	0	69	24	25.81	-	-	-	A	223806218	G	A	223806218	3	1	500	1	0	0	0	0	1	0	0	0	178	1029	36	4	2063	4	ACSL3	2	223806218	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	31580801	223806218	19393155	11	45698										
ALS2CL	0	genome.wustl.edu	37	chr3	46717150	46717150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctccagggcctggcccttgCgctctaaggcaactcgcagc	11	17	1	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	3	46717150	46717150	C	A	SNP	ALS2CL	ENST00000318962	human	ensembl	69_37n	-1	known	missense	c.2213	p.R738L	0.675	NULL	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038	103	0	0	13	5	27.78	-	-	-	A	46717150	C	A	46717150	3	1	500	1	0	0	0	0	1	0	0	0	551	768	27	3	676	3	ALS2CL	3	46717150	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09		46717150	151305280	12	45699										
GOLGB1	0	genome.wustl.edu	37	chr3	121409630	121409630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cttcccttcctctgactttcGaaatttctccagctcattcc	3	16	3	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	3	121409630	121409630	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	nonsense	c.8566	p.R2856*	0.994	superfamily_STAT_TF_coiled-coil	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	207	0	0	109	23	17.42	-	-	-	A	121409630	G	A	121409630	4	1	500	1	0	0	0	0	0	1	0	0	6614	1066	37	1	1249	1	GOLGB1	3	121409630	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	74692480	121409630	76612800	13	45700										
TOPBP1	0	genome.wustl.edu	37	chr3	133379890	133379890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gatgttttcaactcttacctCgagagctttaaaaaaacatt	5	8	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	3	133379890	133379890	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	157	0	0	218	48	18.05	-	-	-	T	133379890	C	T	133379890	3	4	500	1	0	0	0	0	1	0	0	0	16465	893	31	1	4594	1	TOPBP1	3	133379890	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	11970260	133379890	64642540	14	45701										
CNGA1	0	genome.wustl.edu	37	chr4	47939288	47939288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caattcttgcttgaaattctGctctggctgcattcatgttg	8	9	4	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	4	47939288	47939288	G	T	SNP	CNGA1	ENST00000402813	human	ensembl	69_37n	-1	known	missense	c.1430	p.A477E	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	135	0	0	76	24	24	-	-	-	T	47939288	G	T	47939288	3	4	500	1	0	0	0	0	1	0	0	0	3626	1319	46	4	853	4	CNGA1	4	47939288	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		47939288	143214988	15	45702										
MMAA	0	genome.wustl.edu	37	chr4	146560483	146560483	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagatggcttaaagagaaaAttatgtgtacaaacaacctt	7	6	1	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	4	146560483	146560483	A	C	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	1	known	missense	c.192	p.K64N	0.971	NULL	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	330	0	0	143	42	22.7	-	-	-	C	146560483	A	C	146560483	3	2	500	1	0	0	0	0	1	0	0	0	9710	98	4	5	194	5	MMAA	4	146560483	Missense_Mutation	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09	98621195	146560483	44593793	16	45703										
FYB	0	genome.wustl.edu	37	chr5	39202164	39202164	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgaggccaactcttcctgaTttattttgctctggaaggtg	10	9	2	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	5	39202164	39202164	T	C	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	missense	c.929	p.N310S	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	422	0	0	267	76	22.16	-	-	-	C	39202164	T	C	39202164	3	2	500	1	0	0	0	0	1	0	0	0	6173	1493	52	5	1662	5	FYB	5	39202164	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09		39202164	141713096	17	45704										
KCNQ5	0	genome.wustl.edu	37	chr6	73904812	73904812	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgtcccatggtgccgaaggActtgggcaaatctttgtctg	12	10	2	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	6	73904812	73904812	A	G	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.2504	p.D835G	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	214	0	0	86	25	22.52	-	-	-	G	73904812	A	G	73904812	3	3	500	1	0	0	0	0	1	0	0	0	8140	275	10	5	2589	5	KCNQ5	6	73904812	Missense_Mutation	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09		73904812	97210255	18	45705										
ENPP3	0	genome.wustl.edu	37	chr6	132041440	132041440	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attatgacctaggctatcttTctggcacatggacccagttt	8	10	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	6	132041440	132041440	T	C	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	silent	c.1488	p.F496	0.295	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	270	0	0	267	90	25.21	-	-	-	C	132041440	T	C	132041440	2	2	500	1	0	0	0	0	0	0	0	1	5168	1780	62	5		5	ENPP3	6	132041440	Silent	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	58136628	132041440	39073627	19	45706										
DLX5	0	genome.wustl.edu	37	chr7	96653899	96653899	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcttggaagtcgccggatcGgatgctggggacccttctgt	15	10	1	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	7	96653899	96653899	G	A	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	nonsense	c.37	p.R13*	1.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	52	0	0	23	4	14.81	-	-	-	A	96653899	G	A	96653899	4	1	500	1	0	0	0	0	0	1	0	0	4610	1124	39	1	844	1	DLX5	7	96653899	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		96653899	62484764	20	45707										
ZAN	0	genome.wustl.edu	37	chr7	100349832	100349832	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aacccaccatctccatggaaGagactatcatctccacagaa	5	14	3	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	7	100349832	100349832	G	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	nonsense	c.2104	p.E702*	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	668	0	0	956	328	25.55	-	-	-	T	100349832	G	T	100349832	4	4	500	1	0	0	0	0	0	1	0	0	17610	943	33	2	2154	2	ZAN	7	100349832	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	3695933	100349832	58788831	21	45708										
NAMPT	0	genome.wustl.edu	37	chr7	105915391	105915391	+	Splice_Site	SNP	C	C	A													0	0	1	0	0	0	1	1	0	aaagatgaaaccatcttttaCctcaagaatgtagttccatc							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	7	105915391	105915391	C	A	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	splice_site	c.318+1	e3+1	1.000	-	-	-	no_errors	NAMPT	HGNC	ENSG00000105835	557	0	0	470	182	27.91	-	-	-	A	105915391	C	A	105915391	5	1	500	1	0	0	0	0	0	0	1	0	10221	521	18	4	1192	4	NAMPT	7	105915391	Splice_Site	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	5565559	105915391	53223272	22	45709	378	2								
NAMPT	0	genome.wustl.edu	37	chr7	105915392	105915392	+	Missense_Mutation	SNP	C	C	G													0	0	1	0	0	0	1	1	0	aagatgaaaccatcttttacCtcaagaatgtagttccatcc							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	7	105915392	105915392	C	G	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	missense	c.318	p.E106D	1.000	pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835	565	0	0	480	180	27.27	-	-	-	G	105915392	C	G	105915392	3	3	500	1	0	0	0	0	1	0	0	0	10221	695	24	4	1193	4	NAMPT	7	105915392	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	1	105915392	53223271	23	45710	378	2								
SLC39A14	0	genome.wustl.edu	37	chr8	22262288	22262288	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gctgaccctgcttggcttatGgagaaccacccctgaggctc							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	8	22262288	22262288	G	-	DEL	SLC39A14	ENST00000359741	human	ensembl	69_37n	1	known	frame_shift_del	c.65	p.W22fs	0.232	NULL	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635	58	0	0	16	2	11.11	-	-	-	-	22262288	G	-	22262288	7	5	500	1	0	1	0	1	0	0	0	0	14706	1357	47	0	67	0	SLC39A14	8	22262288	Frame_Shift_Del	DEL	G	TCGA-BH-A0BL-01A-11D-A10Y-09		22262288	124101734	24	45711										
CSMD3	0	genome.wustl.edu	37	chr8	113504808	113504808	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ataaccttgaagaacataacCagcatcacagtaataggtga	7	8	1	3			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	8	113504808	113504808	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.5188	p.G1730C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	399	0	0	198	83	29.54	-	-	-	A	113504808	C	A	113504808	3	1	500	1	0	0	0	0	1	0	0	0	3978	594	21	4	6099	4	CSMD3	8	113504808	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	91242520	113504808	32859214	25	45712										
ZNF251	0	genome.wustl.edu	37	chr8	145948698	145948698	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gtcttcttgatacaaattctGgggtttttacttcttcggaa							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	8	145948698	145948698	G	-	DEL	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	frame_shift_del	c.347	p.P116fs	0.130	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	45	0	0	49	8	13.79	-	-	-	-	145948698	G	-	145948698	7	5	500	1	0	1	0	1	0	0	0	0	17892	1348	47	0	1672	0	ZNF251	8	145948698	Frame_Shift_Del	DEL	G	TCGA-BH-A0BL-01A-11D-A10Y-09	32443890	145948698	415324	26	45713										
SLC25A25	0	genome.wustl.edu	37	chr9	130863453	130863453	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccattatctccaagatcatGagaagaagctgaggctggtg	11	8	2	4			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	9	130863453	130863453	G	T	SNP	SLC25A25	ENST00000373069	human	ensembl	69_37n	1	known	nonsense	c.340	p.E114*	1.000	pfscan_EF_HAND_2	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,prints_Mit_carrier,prints_Graves_DC,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A25	HGNC	ENSG00000148339	305	0	0	165	19	10.33	-	-	-	T	130863453	G	T	130863453	4	4	500	1	0	0	0	0	0	1	0	0	14577	1291	45	2	732	2	SLC25A25	9	130863453	Nonsense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		130863453	10349978	27	45714										
USP54	0	genome.wustl.edu	37	chr10	75264684	75264684	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gactgcgtgagatgcgacgtAaattctctgcactgtactgc	11	10	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	10	75264684	75264684	A	G	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.4235	p.L1412S	0.920	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	261	0	0	108	39	26.53	-	-	-	G	75264684	A	G	75264684	3	3	500	1	0	0	0	0	1	0	0	0	17182	372	13	5	831	5	USP54	10	75264684	Missense_Mutation	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09		75264684	60270063	28	45715										
MUC5B	0	genome.wustl.edu	37	chr11	1253327	1253327	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgccaacacctggaaggccCaggctgcctgtgccaatgcc	11	16	0	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	11	1253327	1253327	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.1789	p.Q597E	0.997	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	109	0	0	23	5	17.86	-	-	-	G	1253327	C	G	1253327	3	3	500	1	0	0	0	0	1	0	0	0	10051	595	21	4	1847	4	MUC5B	11	1253327	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09		1253327	133753189	29	45716										
ZNF215	0	genome.wustl.edu	37	chr11	6977547	6977547	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggaaaggccttcagtaaaAgtgaagacagtaataatcca	10	6	1	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	11	6977547	6977547	A	T	SNP	ZNF215	ENST00000278319	human	ensembl	69_37n	1	known	missense	c.1339	p.S447C	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054	204	0	0	143	17	10.62	-	-	-	T	6977547	A	T	6977547	3	4	500	1	0	0	0	0	1	0	0	0	17867	72	3	5	1357	5	ZNF215	11	6977547	Missense_Mutation	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09	5724220	6977547	128028969	30	45717										
RIMKLB	0	genome.wustl.edu	37	chr12	8904625	8904625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccaatggtagtaaagaataCgcggggtcacagaggtatgt	13	7	1	2			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	12	8904625	8904625	C	T	SNP	RIMKLB	ENST00000357529	human	ensembl	69_37n	1	known	missense	c.479	p.T160M	1.000	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLB	HGNC	ENSG00000166532	523	0	0	446	112	20.07	-	-	-	T	8904625	C	T	8904625	3	4	500	1	0	0	0	0	1	0	0	0	13452	536	19	1	489	1	RIMKLB	12	8904625	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09		8904625	124947270	31	45718										
SUOX	0	genome.wustl.edu	37	chr12	56397550	56397550	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggggggccttcaaagctgaTgctagcagctgggggtcccc	16	11	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	12	56397550	56397550	T	G	SNP	SUOX	ENST00000266971	human	ensembl	69_37n	1	known	missense	c.377	p.M126R	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Cyt_B5	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5	-	no_errors	SUOX	HGNC	ENSG00000139531	139	0	0	38	16	29.63	-	-	-	G	56397550	T	G	56397550	3	3	500	1	0	0	0	0	1	0	0	0	15486	1464	51	5	387	5	SUOX	12	56397550	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	47492925	56397550	77454345	32	45719										
NARG2	0	genome.wustl.edu	37	chr15	60741135	60741135	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacaattgctcagaaacagaAggctgtttagaattttctaa	8	6	2	3			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	15	60741135	60741135	A	G	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	silent	c.2031	p.P677	0.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	120	0	0	93	51	35.42	-	-	-	G	60741135	A	G	60741135	2	3	500	1	0	0	0	0	0	0	0	1	10241	59	3	5		5	NARG2	15	60741135	Silent	SNP	A	TCGA-BH-A0BL-01A-11D-A10Y-09		60741135	41790257	33	45720										
SSTR5	0	genome.wustl.edu	37	chr16	1129206	1129206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttcggccccgtcctgtgccGcctggtcatgacgctggacg	13	16	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	1129206	1129206	G	A	SNP	SSTR5	ENST00000293897	human	ensembl	69_37n	1	known	missense	c.338	p.R113H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Somatstn_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	SSTR5	HGNC	ENSG00000162009	65	0	0	13	5	26.32	-	-	-	A	1129206	G	A	1129206	3	1	500	1	0	0	0	0	1	0	0	0	15292	1087	38	1	340	1	SSTR5	16	1129206	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		1129206	89225547	34	45721										
PDILT	0	genome.wustl.edu	37	chr16	20396021	20396021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaaaacagcttcaactccgGggccttggtaatcccaaact	7	12	1	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	20396021	20396021	G	T	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.355	p.P119T	0.478	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	370	2	0.54	153	35	18.62	-	-	-	T	20396021	G	T	20396021	3	4	500	1	0	0	0	0	1	0	0	0	11747	1232	43	4	1439	4	PDILT	16	20396021	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	19266815	20396021	69958732	35	45722										
C16orf80	0	genome.wustl.edu	37	chr16	58149339	58149339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tacttgcccgaaagcgacgaCgcacattcttgtcatctagt	8	12	3	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	58149339	58149339	C	T	SNP	C16orf80	ENST00000262498	human	ensembl	69_37n	-1	known	missense	c.299	p.R100H	1.000	pfam_DUF667	pfam_DUF667	-	no_errors	C16orf80	HGNC	ENSG00000070761	385	0	0	86	37	30.08	-	-	-	T	58149339	C	T	58149339	3	4	500	1	0	0	0	0	1	0	0	0	1850	536	19	1	294	1	C16orf80	16	58149339	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	37753318	58149339	32205414	36	45723										
VAC14	0	genome.wustl.edu	37	chr16	70818087	70818087	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgcaacaaggggatgaagcTcaccaggtcaaacttgttgc	11	10	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	70818087	70818087	T	G	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.523	p.S175R	0.939	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	117	0	0	44	6	12	-	-	-	G	70818087	T	G	70818087	3	3	500	1	0	0	0	0	1	0	0	0	17208	1551	54	5	1885	5	VAC14	16	70818087	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	12668748	70818087	19536666	37	45724										
HYDIN	0	genome.wustl.edu	37	chr16	70900083	70900083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgactcactcaaacactcgGgtctggtaaaccaaggtttc	8	11	3	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	70900083	70900083	G	T	SNP	HYDIN	ENST00000378856	human	ensembl	69_37n	-1	known	missense	c.118	p.P40T	0.989	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HYDIN	HGNC	ENSG00000157423	348	0	0	118	41	25.62	-	-	-	T	70900083	G	T	70900083	3	4	500	1	0	0	0	0	1	0	0	0	7521	1219	43	4	3985	4	HYDIN	16	70900083	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	81996	70900083	19454670	38	45725										
HYDIN	0	genome.wustl.edu	37	chr16	70954676	70954676	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggctcgcagcttctccaggcGctcccgctccgccttctccc	9	21	2	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	16	70954676	70954676	G	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.7600	p.R2534G	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	171	0	0	82	18	18	-	-	-	C	70954676	G	C	70954676	3	2	500	1	0	0	0	0	1	0	0	0	7521	1087	38	3	7926	3	HYDIN	16	70954676	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	54593	70954676	19400077	39	45726										
WDR81	0	genome.wustl.edu	37	chr17	1630714	1630714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccctgtgtctttgcagcccGtgctggacacactcctgcag	10	15	1	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	17	1630714	1630714	G	A	SNP	WDR81	ENST00000409644	human	ensembl	69_37n	1	known	missense	c.2461	p.V821M	0.982	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	24	0	0	7	4	36.36	-	-	-	A	1630714	G	A	1630714	3	1	500	1	0	0	0	0	1	0	0	0	17427	1145	40	1	2525	1	WDR81	17	1630714	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09		1630714	79564496	40	45727										
TP53	0	genome.wustl.edu	37	chr17	7578478	7578478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggacgcgggtgccgggcgggGgtgtggaatcaacccacagc	19	11	1	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	17	7578478	7578478	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.452	p.P151H	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	106	0	0	30	12	28.57	-	-	-	T	7578478	G	T	7578478	3	4	500	1	0	0	0	0	1	0	0	0	16477	1232	43	4	846	4	TP53	17	7578478	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	5947764	7578478	73616732	41	45728										
KRTAP4-7	0	genome.wustl.edu	37	chr17	39240791	39240791	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgccagcccacctgctgccgCcccagctgctgccgcccctg	10	22	0	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	c02df4df-aa5a-4e13-b0a6-5a4d46e4f474	17	39240791	39240791	C	T	SNP	KRTAP4-7	ENST00000391417	human	ensembl	69_37n	1	known	silent	c.333	p.R111	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871	126	1	0.79	22	4	15.38	-	-	-	T	39240791	C	T	39240791	2	4	500	1	0	0	0	0	0	0	0	1	8609	726	26	4		4	KRTAP4-7	17	39240791	Silent	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	31662313	39240791	41954419	42	45729										
HLF	0	genome.wustl.edu	37	chr17	53398125	53398125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccagatcgccatccgggcctCgttcctggagaaggagaact	12	13	0	3			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	17	53398125	53398125	C	T	SNP	HLF	ENST00000226067	human	ensembl	69_37n	1	known	missense	c.773	p.S258L	0.999	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	79	0	0	19	11	36.67	-	-	-	T	53398125	C	T	53398125	3	4	500	1	0	0	0	0	1	0	0	0	7265	893	31	1	787	1	HLF	17	53398125	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09	14157334	53398125	27797085	43	45730										
VPS4B	0	genome.wustl.edu	37	chr18	61064481	61064481	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agggaatataaattcgtttcTcaaatcttaaaagagaaatt	6	4	2	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	18	61064481	61064481	T	G	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.878	p.E293A	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	150	0	0	118	27	18.62	-	-	-	G	61064481	T	G	61064481	3	3	500	1	0	0	0	0	1	0	0	0	17310	1551	54	5	468	5	VPS4B	18	61064481	Missense_Mutation	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09		61064481	17012767	44	45731										
HMHA1	0	genome.wustl.edu	37	chr19	1084238	1084238	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	ttccgttctgcacttgcaggAcgagtcatccaaccagcgag							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	19	1084238	1084238	A	-	DEL	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	frame_shift_del	c.2957	p.D986fs	0.113	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	28	0	0	3	2	40	-	-	-	-	1084238	A	-	1084238	7	5	500	1	0	1	0	1	0	0	0	0	7291	289	10	0	3043	0	HMHA1	19	1084238	Frame_Shift_Del	DEL	A	TCGA-BH-A0BL-01A-11D-A10Y-09		1084238	58044745	45	45732										
FBL	0	genome.wustl.edu	37	chr19	40331123	40331123	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	tctttttcctccccgaccacGaccccggttgccaccagaat	6	18	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	19	40331123	40331123	G	C	SNP	FBL	ENST00000221801	human	ensembl	69_37n	-1	known	missense	c.214	p.R72G	1.000	pirsf_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202	336	1	0.3	129	21	14	-	-	-	C	40331123	G	C	40331123	3	2	500	1	0	0	0	0	1	0	0	0	5742	1058	37	3	779	3	FBL	19	40331123	Missense_Mutation	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	39246885	40331123	18797860	46	45733										
CNOT3	0	genome.wustl.edu	37	chr19	54655991	54655991	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	gcctctgagctccttgaagtCcatggcggaacgggcagcca							TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	19	54655991	54655991	C	-	DEL	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	frame_shift_del	c.1634	p.M546fs	1.000	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	68	0	0	16	2	11.11	-	-	-	-	54655991	C	-	54655991	7	5	500	1	0	1	0	1	0	0	0	0	3650	855	30	0	1684	0	CNOT3	19	54655991	Frame_Shift_Del	DEL	C	TCGA-BH-A0BL-01A-11D-A10Y-09	14324868	54655991	4472992	47	45734										
FCAR	0	genome.wustl.edu	37	chr19	55399555	55399555	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccggccaacttctctttgggTcctgtggacctcaatgtctc	9	14	3	0			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	19	55399555	55399555	T	C	SNP	FCAR	ENST00000355524	human	ensembl	69_37n	1	known	silent	c.543	p.G181	0.191	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	171	0	0	63	9	12.5	-	-	-	C	55399555	T	C	55399555	2	2	500	1	0	0	0	0	0	0	0	1	5819	1654	58	5		5	FCAR	19	55399555	Silent	SNP	T	TCGA-BH-A0BL-01A-11D-A10Y-09	743564	55399555	3729428	48	45735										
LZTR1	0	genome.wustl.edu	37	chr22	21351225	21351225	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggacatgaagcggcactgCctgcacatcattgtgcacca	10	13	1	1			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	22	21351225	21351225	C	A	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	nonsense	c.2376	p.C792*	1.000	superfamily_BTB/POZ_fold	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	95	0	0	3	7	70	-	-	-	A	21351225	C	A	21351225	4	1	500	1	0	0	0	0	0	1	0	0	9204	747	26	4	2454	4	LZTR1	22	21351225	Nonsense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09		21351225	29953341	49	45736										
RPS6KA3	0	genome.wustl.edu	37	chrX	20185730	20185730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtgcgtgaagatattcaaCggttttagttatagtgaaca	10	4	1	3			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	X	20185730	20185730	C	T	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	missense	c.1579	p.V527I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	415	0	0	298	74	19.89	-	-	-	T	20185730	C	T	20185730	3	4	500	1	0	0	0	0	1	0	0	0	13738	536	19	1	667	1	RPS6KA3	23	20185730	Missense_Mutation	SNP	C	TCGA-BH-A0BL-01A-11D-A10Y-09		20185730	135084830	50	45737										
PDK3	0	genome.wustl.edu	37	chrX	24552117	24552117	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggcgccattacaagaccacGcctgaagccgatgattggag	12	11	0	3			TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1eb22fbe-6108-46c9-b51b-814861c3e104	10add567-cef4-464f-98a7-23a153bc1c40	X	24552117	24552117	G	T	SNP	PDK3	ENST00000441463	human	ensembl	69_37n	1	known	silent	c.1149	p.T383	0.642	NULL	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK3	HGNC	ENSG00000067992	211	0	0	117	46	27.88	-	-	-	T	24552117	G	T	24552117	2	4	500	1	0	0	0	0	0	0	0	1	11750	1074	38	3		3	PDK3	23	24552117	Silent	SNP	G	TCGA-BH-A0BL-01A-11D-A10Y-09	4366387	24552117	130718443	51	45738										
HRNR	0	genome.wustl.edu	37	chr1	152188277	152188277	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tagggctaggagactggccaGatccagacccatgttggccg	14	11	0	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	1	152188277	152188277	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5828	p.S1943Y	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	73	0	0	34	9	20.93	-	-	-	T	152188277	G	T	152188277	3	4	501	1	0	0	0	0	1	0	0	0	7410	942	33	2	2728	2	HRNR	1	152188277	Missense_Mutation	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09		152188277	97062344	1	45739										
ETAA1	0	genome.wustl.edu	37	chr2	67631500	67631500	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ctaggcagtaaaaccagtgtTagtaacccaaatcagactag	8	9	1	1			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	67631500	67631500	T	C	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	1	known	silent	c.1686	p.V562	0.000	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	158	0	0	93	39	29.55	-	-	-	C	67631500	T	C	67631500	2	2	501	1	0	0	0	0	0	0	0	1	5304	1741	61	5		5	ETAA1	2	67631500	Silent	SNP	T	TCGA-BH-A0BM-01A-11W-A071-09		67631500	175567873	2	45740										
CLASP1	0	genome.wustl.edu	37	chr2	122125357	122125358	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ggcctccttctacttcactaINScccccccggccctcagtggc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	122125357	122125358	-	C	INS	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3693_3692	p.S1232fs	0.024:0.316	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	25	0	0	16	3	15.79	-	-	-	C	122125358	-	C	122125357	7	5	501	1	0	1	1	0	0	0	0	0	3484	378	14	0	947	0	CLASP1	2	122125357	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	54493857	122125357	121074016	3	45741										
TANC1	0	genome.wustl.edu	37	chr2	160031601	160031601	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	cttctgataaaggagccccaActacagagcatgctgagcct	9	12	1	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	160031601	160031601	A	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.1641	p.Q547	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	384	0	0	80	28	25.69	-	-	-	G	160031601	A	G	160031601	2	3	501	1	0	0	0	0	0	0	0	1	15636	40	2	5		5	TANC1	2	160031601	Silent	SNP	A	TCGA-BH-A0BM-01A-11W-A071-09	37906244	160031601	83167772	4	45742										
HDAC11	0	genome.wustl.edu	37	chr3	13538267	13538268	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gttgctaccatcacagaaatINScccccccgttatcttcctcc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	13538267	13538268	-	C	INS	HDAC11	ENST00000295757	human	ensembl	69_37n	1	known	frame_shift_ins	c.284_285	p.V98fs	1.000:1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	32	0	0	17	2	10.53	-	-	-	C	13538268	-	C	13538267	7	5	501	1	0	1	1	0	0	0	0	0	7057	1435	50	0	298	0	HDAC11	3	13538267	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		13538267	184484163	5	45743										
DOCK3	0	genome.wustl.edu	37	chr3	51417603	51417604	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ccaccaccctctgggtgataINScccccccagccctccctgcc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	51417603	51417604	-	C	INS	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	frame_shift_ins	c.5548_5549	p.A1853fs	0.453:0.115	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	13	0	0	6	3	33.33	-	-	-	C	51417604	-	C	51417603	7	5	501	1	0	1	1	0	0	0	0	0	4723	391	14	0	5754	0	DOCK3	3	51417603	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	37879336	51417603	146604827	6	45744										
ADAMTS9	0	genome.wustl.edu	37	chr3	64554073	64554073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	agcgccagctttccatttggGgcatcttcctcctcggcact	9	15	1	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	64554073	64554073	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4495	p.P1499S	1.000	smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	351	0	0	35	16	31.37	-	-	-	A	64554073	G	A	64554073	3	1	501	1	0	0	0	0	1	0	0	0	273	1232	43	4	1356	4	ADAMTS9	3	64554073	Missense_Mutation	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09	13136470	64554073	133468357	7	45745										
ALDH1L1	0	genome.wustl.edu	37	chr3	125855665	125855666	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gccctcggcatccacgaactINScccccccaatgaagagctgg							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	125855665	125855666	-	C	INS	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.E429fs	0.000:0.000	superfamily_Ald_DH/histidinol_DH,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	10	0	0	0	2	100	-	-	-	C	125855666	-	C	125855665	7	5	501	1	0	1	1	0	0	0	0	0	494	1551	54	0	1474	0	ALDH1L1	3	125855665	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	61301592	125855665	72166765	8	45746										
RPN1	0	genome.wustl.edu	37	chr3	128356884	128356884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	atgggtgtagactgtttccaCaatgactgaaatcttggccc	10	9	1	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	128356884	128356884	C	T	SNP	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	missense	c.391	p.V131M	0.825	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	84	0	0	39	26	40	-	-	-	T	128356884	C	T	128356884	3	4	501	1	0	0	0	0	1	0	0	0	13693	478	17	4	1464	4	RPN1	3	128356884	Missense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09	2501219	128356884	69665546	9	45747										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	139	0	0	60	38	38.78	-	-	-	A	178921553	T	A	178921553	3	1	501	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-BH-A0BM-01A-11W-A071-09	50564669	178921553	19100877	10	45748										
ENPEP	0	genome.wustl.edu	37	chr4	111469355	111469355	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tcaacttctagattataaggTggctttgaacttgaccaagt	8	7	2	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	4	111469355	111469355	T	G	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.2024	p.V675G	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	22	0	0	20	5	20	-	-	-	G	111469355	T	G	111469355	3	3	501	1	0	0	0	0	1	0	0	0	5165	1696	59	5	2078	5	ENPEP	4	111469355	Missense_Mutation	SNP	T	TCGA-BH-A0BM-01A-11W-A071-09		111469355	79684921	11	45749										
PRKAA1	0	genome.wustl.edu	37	chr5	40798188	40798189	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	cactttgccgaaggtgccgaINScccccagcgtgtcacccaga							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	5	40798188	40798189	-	C	INS	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	frame_shift_ins	c.104_103	p.V35fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	11	0	0	4	2	33.33	-	-	-	C	40798189	-	C	40798188	7	5	501	1	0	1	1	0	0	0	0	0	12574	275	10	0	1660	0	PRKAA1	5	40798188	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		40798188	140117072	12	45750										
PCDHAC2	0	genome.wustl.edu	37	chr5	140347311	140347312	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ccggggaagtgcgagtaattINSggggggctggattatgagga							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	5	140347311	140347312	-	G	INS	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	frame_shift_ins	c.960_961	p.L322fs	0.611:0.832	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	43	0	0	23	3	11.54	-	-	-	G	140347312	-	G	140347311	7	5	501	1	0	1	1	0	0	0	0	0	11606	1800	63	0	962	0	PCDHAC2	5	140347311	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	99549123	140347311	40567949	13	45751										
RGL2	0	genome.wustl.edu	37	chr6	33260312	33260312	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gacacttggagccttgtcctGgcttgtcacctggcagaaca	11	12	1	1			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	6	33260312	33260312	G	C	SNP	RGL2	ENST00000497454	human	ensembl	69_37n	-1	known	missense	c.2017	p.Q673E	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441	120	0	0	32	10	23.81	-	-	-	C	33260312	G	C	33260312	3	2	501	1	0	0	0	0	1	0	0	0	13360	1357	47	4	324	4	RGL2	6	33260312	Missense_Mutation	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09		33260312	137854755	14	45752										
AARS2	0	genome.wustl.edu	37	chr6	44269188	44269189	+	Frame_Shift_Ins	INS	-	-	T													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ccgctccagcagctcctgagINSttttctttgcagcctatggg							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	6	44269188	44269189	-	T	INS	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2612_2611	p.T871fs	0.989:0.336	tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	38	0	0	26	3	10.34	-	-	-	T	44269189	-	T	44269188	7	5	501	1	0	1	1	0	0	0	0	0	20	1029	36	0	357	0	AARS2	6	44269188	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	11008876	44269188	126845879	15	45753										
CSMD1	0	genome.wustl.edu	37	chr8	2830770	2830770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tcttaaagtcatcaccaagcCgagacccatgtgctggggtc	10	12	3	1			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	2830770	2830770	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.8795	p.R2932Q	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	165	0	0	92	44	32.35	-	-	-	T	2830770	C	T	2830770	3	4	501	1	0	0	0	0	1	0	0	0	3976	652	23	1	1958	1	CSMD1	8	2830770	Missense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09		2830770	143533252	16	45754										
HR	0	genome.wustl.edu	37	chr8	21984854	21984855	+	Frame_Shift_Ins	INS	-	-	CT													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tggggggacaggccctggggINSccagaggccttgttcacttc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	21984854	21984855	-	CT	INS	HR	ENST00000381418	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1101_1100	p.P368fs	0.000:0.001	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453	10	0	0	8	4	33.33	-	-	-	CT	21984855	-	CT	21984854	7	5	501	1	0	1	1	0	0	0	0	0	7398	1190	42	0	2536	0	HR	8	21984854	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	19154084	21984854	124379168	17	45755										
RAD54B	0	genome.wustl.edu	37	chr8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	agacaatgaatttttccaacGaatcacctgtaataagtaaa	5	7	1	2			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	95384609	95384609	G	T	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	nonsense	c.2522	p.S841*	0.992	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	73	0	0	48	22	31.43	-	-	-	T	95384609	G	T	95384609	4	4	501	1	0	0	0	0	0	1	0	0	13075	1059	37	3	214	3	RAD54B	8	95384609	Nonsense_Mutation	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09	73399755	95384609	50979413	18	45756										
SPATC1	0	genome.wustl.edu	37	chr8	145095485	145095486	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tagtcccactctccactgagINScccccccagtcgacccagga							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	8	145095485	145095486	-	C	INS	SPATC1	ENST00000377470	human	ensembl	69_37n	1	known	frame_shift_ins	c.783_784	p.Q263fs	0.013:0.003	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583	21	0	0	13	2	13.33	-	-	-	C	145095486	-	C	145095485	7	5	501	1	0	1	1	0	0	0	0	0	15108	962	34	0	793	0	SPATC1	8	145095485	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	49710876	145095485	1268537	19	45757										
TSC1	0	genome.wustl.edu	37	chr9	135797350	135797350	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	agatggacgagatagacttcCgccacgtggcctagaaaagg	13	9	0	4			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	9	135797350	135797350	C	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.856	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	259	0	0	106	42	28.38	-	-	-	T	135797350	C	T	135797350	2	4	501	1	0	0	0	0	0	0	0	1	16701	639	23	1		1	TSC1	9	135797350	Silent	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09		135797350	5416081	20	45758										
CACNA1B	0	genome.wustl.edu	37	chr9	140866030	140866030	+	Frame_Shift_Del	DEL	T	T	-													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ttacaaccagccgcggcggcTtaccacgaccctgtgtacgt							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	9	140866030	140866030	T	-	DEL	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	frame_shift_del	c.1532	p.T512fs	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	12	0	0	2	2	50	-	-	-	-	140866030	T	-	140866030	7	5	501	1	0	1	0	1	0	0	0	0	2564	1609	56	0	1571	0	CACNA1B	9	140866030	Frame_Shift_Del	DEL	T	TCGA-BH-A0BM-01A-11W-A071-09	5068680	140866030	347401	21	45759										
COL13A1	0	genome.wustl.edu	37	chr10	71690202	71690203	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ggccctcctggtccccaaggINSccccccaggaaaggatggac							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	10	71690202	71690203	-	C	INS	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	frame_shift_ins	c.1544_1545	p.G518fs	1.000:0.979	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	12	0	0	13	2	13.33	-	-	-	C	71690203	-	C	71690202	7	5	501	1	0	1	1	0	0	0	0	0	3700	1203	42	0	1658	0	COL13A1	10	71690202	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		71690202	63844545	22	45760										
DEAF1	0	genome.wustl.edu	37	chr11	678769	678770	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ctgtcctgatagccggggtaINSgtgaggctcagggtggctgg							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	11	678769	678770	-	C	INS	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1180_1179	p.Y393fs	1.000:1.000	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	58	0	0	28	8	22.22	-	-	-	C	678770	-	C	678769	7	5	501	1	0	1	1	0	0	0	0	0	4411	420	15	0	533	0	DEAF1	11	678769	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		678769	134327747	23	45761										
DSCAML1	0	genome.wustl.edu	37	chr11	117651408	117651408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ccaggtaccatcgaagggccGcgctgggggagcccgcggcc	17	15	0	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	11	117651408	117651408	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	39	0	0	9	6	40	-	-	-	A	117651408	G	A	117651408	3	1	501	1	0	0	0	0	1	0	0	0	4804	1087	38	1	6125	1	DSCAML1	11	117651408	Missense_Mutation	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09	116972639	117651408	17355108	24	45762										
OSBPL8	0	genome.wustl.edu	37	chr12	76793679	76793679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ccaatcagccataacaataaCagaaggatctgtgattgtac	7	9	2	2			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	12	76793679	76793679	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.442	p.V148I	1.000	pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	103	0	0	60	13	17.81	-	-	-	T	76793679	C	T	76793679	3	4	501	1	0	0	0	0	1	0	0	0	11356	478	17	4	2299	4	OSBPL8	12	76793679	Missense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09		76793679	57058216	25	45763										
TESC	0	genome.wustl.edu	37	chr12	117494613	117494613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tcaggggaaaacgcccacctGttgtcgaagaaggcacgaac	12	11	1	1			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	12	117494613	117494613	G	A	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	silent	c.366	p.N122	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	21	0	0	27	9	25	-	-	-	A	117494613	G	A	117494613	2	1	501	1	0	0	0	0	0	0	0	1	15861	1368	48	4		4	TESC	12	117494613	Silent	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09	40700934	117494613	16357282	26	45764										
CSPG4	0	genome.wustl.edu	37	chr15	75983021	75983021	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gactgctgaggaggcgttcaGaaacccatcgactgacaacg	12	11	1	3			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	15	75983021	75983021	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.385	p.L129	0.431	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	11	0	0	5	6	54.55	-	-	-	A	75983021	G	A	75983021	2	1	501	1	0	0	0	0	0	0	0	1	3992	933	33	2		2	CSPG4	15	75983021	Silent	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09		75983021	26548371	27	45765										
ZFHX3	0	genome.wustl.edu	37	chr16	72821959	72821960	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ttgtctggggaaggagccccINSgggggggactggggtttggc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	16	72821959	72821960	-	G	INS	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	frame_shift_ins	c.10216_10215	p.G3405fs	1.000:0.977	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	55	0	0	23	3	11.54	-	-	-	G	72821960	-	G	72821959	7	5	501	1	0	1	1	0	0	0	0	0	17730	652	23	0	899	0	ZFHX3	16	72821959	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		72821959	17532794	28	45766										
PKD1L2	0	genome.wustl.edu	37	chr16	81155268	81155269	+	In_Frame_Ins	INS	-	-	TTG													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	aaggggtgccagccgtcggtINSgaaggggtacaggcggaggc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	16	81155268	81155269	-	TTG	INS	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	in_frame_ins	c.6534_6533	p.2179in_frame_insK	1.000:1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	19	0	0	4	2	33.33	-	-	-	TTG	81155269	-	TTG	81155268	7	5	501	1	0	1	1	0	0	0	0	0	12039	1696	59	0	868	0	PKD1L2	16	81155268	In_Frame_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09	8333309	81155268	9199485	29	45767										
NLE1	0	genome.wustl.edu	37	chr17	33463230	33463230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	agagccctctccttcaactcCtgcactgtgaccaggtaccg	8	16	2	2			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	33463230	33463230	C	T	SNP	NLE1	ENST00000588019	human	ensembl	69_37n	-1	novel	missense	c.308	p.R103K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLE1	HGNC	ENSG00000073536	272	0	0	69	28	28.57	-	-	-	T	33463230	C	T	33463230	3	4	501	1	0	0	0	0	1	0	0	0	10532	680	24	4	508	4	NLE1	17	33463230	Missense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09		33463230	47731980	30	45768										
KRT36	0	genome.wustl.edu	37	chr17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gatctgaaactcgtaccactCctggatgcggctctccagct	9	14	2	1			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	39645738	39645738	C	A	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	nonsense	c.379	p.E127*	0.939	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	151	0	0	49	25	33.78	-	-	-	A	39645738	C	A	39645738	4	1	501	1	0	0	0	0	0	1	0	0	8526	864	30	2	1052	2	KRT36	17	39645738	Nonsense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09	6182508	39645738	41549472	31	45769										
DDX5	0	genome.wustl.edu	37	chr17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	cttccaaagctcccattggtGtaatttgcagcactgtaaac							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	62496266	62496266	G	-	DEL	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	347	0	0	180	58	23.48	-	-	-	-	62496266	G	-	62496266	7	5	501	1	0	1	0	1	0	0	0	0	4398	1372	48	0	228	0	DDX5	17	62496266	Frame_Shift_Del	DEL	G	TCGA-BH-A0BM-01A-11W-A071-09	22850528	62496266	18698944	32	45770										
FCGBP	0	genome.wustl.edu	37	chr19	40370471	40370471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tcatagttgggcaggcacacGccctggccaccctgctcctt	10	16	1	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	19	40370471	40370471	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12195	p.G4065	0.017	smart_Fol_N,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	8	0	0	2	4	66.67	-	-	-	A	40370471	G	A	40370471	2	1	501	1	0	0	0	0	0	0	0	1	5824	1074	38	1		1	FCGBP	19	40370471	Silent	SNP	G	TCGA-BH-A0BM-01A-11W-A071-09		40370471	18758512	33	45771										
FCGBP	0	genome.wustl.edu	37	chr19	40383695	40383695	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ttctcagcccccaagggtggTccgtggcagggtgcactcag	14	13	2	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	19	40383695	40383695	T	C	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9915	p.G3305	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	27	0	0	12	4	25	-	-	-	C	40383695	T	C	40383695	2	2	501	1	0	0	0	0	0	0	0	1	5824	1654	58	5		5	FCGBP	19	40383695	Silent	SNP	T	TCGA-BH-A0BM-01A-11W-A071-09	13224	40383695	18745288	34	45772										
RUNX1	0	genome.wustl.edu	37	chr21	36171704	36171705	+	Frame_Shift_Ins	INS	-	-	TA													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	gagaggcaatggatcccaggINStattggtaggactgatcgta							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	21	36171704	36171705	-	TA	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.861_860	p.L288fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	139	0	0	39	30	43.48	-	-	-	TA	36171705	-	TA	36171704	7	5	501	1	0	1	1	0	0	0	0	0	13832	1256	44	0	589	0	RUNX1	21	36171704	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		36171704	11958191	35	45773										
CDC42EP1	0	genome.wustl.edu	37	chr22	37962638	37962639	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tggtgcggagggtgggggcgINScccccccggaggatggcatc							TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	22	37962638	37962639	-	C	INS	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	frame_shift_ins	c.282_283	p.R96fs	0.000:0.001	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	24	0	0	15	3	16.67	-	-	-	C	37962639	-	C	37962638	7	5	501	1	0	1	1	0	0	0	0	0	3104	1074	38	0	284	0	CDC42EP1	22	37962638	Frame_Shift_Ins	INS	-	TCGA-BH-A0BM-01A-11W-A071-09		37962638	13341928	36	45774										
KDM5C	0	genome.wustl.edu	37	chrX	53247017	53247017	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	tggtacatttcatagggataAacaatgcgttcgtagtggga	12	5	1	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	53247017	53247017	A	C	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.483	p.V161	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	216	1	0.46	70	23	24.73	-	-	-	C	53247017	A	C	53247017	2	2	501	1	0	0	0	0	0	0	0	1	8188	1	1	5		5	KDM5C	23	53247017	Silent	SNP	A	TCGA-BH-A0BM-01A-11W-A071-09		53247017	102023543	37	45775										
PCDH11X	0	genome.wustl.edu	37	chrX	91873568	91873568	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0526315789473684	2	0.827962560261875	1.29022988505747	3.87068965517241	0.774137931034483	1	1	0	ctctccaccacagtcctcctCtagtgcaggctactgcactt	6	17	2	0			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	91873568	91873568	C	G	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3673	p.L1225V	0.822	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	333	0	0	175	58	24.89	-	-	-	G	91873568	C	G	91873568	3	3	501	1	0	0	0	0	1	0	0	0	11581	912	32	2	3821	2	PCDH11X	23	91873568	Missense_Mutation	SNP	C	TCGA-BH-A0BM-01A-11W-A071-09	38626551	91873568	63396992	38	45776										
LTBP1	0	genome.wustl.edu	37	chr2	33540311	33540311	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tgccagcagggtttctcaatCtctgcagatggccgtacgtg	12	11	2	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	2	33540311	33540311	C	G	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.3708	p.I1236M	0.964	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	226	0	0	168	33	16.34	-	-	-	G	33540311	C	G	33540311	3	3	502	1	0	0	0	0	1	0	0	0	9139	903	32	2	3854	2	LTBP1	2	33540311	Missense_Mutation	SNP	C	TCGA-BH-A0BO-01A-23D-A12B-09		33540311	209659062	1	45777										
ZNF619	0	genome.wustl.edu	37	chr3	40529529	40529529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	ctctgcctccccaacataccTgctctgccctagccccacca	4	22	2	0			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	3	40529529	40529529	T	C	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	missense	c.1648	p.C550R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	411	0	0	316	48	13.01	-	-	-	C	40529529	T	C	40529529	3	2	502	1	0	0	0	0	1	0	0	0	18139	1580	55	5	1688	5	ZNF619	3	40529529	Missense_Mutation	SNP	T	TCGA-BH-A0BO-01A-23D-A12B-09		40529529	157492901	2	45778										
CD86	0	genome.wustl.edu	37	chr3	121825056	121825056	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tgctttcagctaacttcagtCaacctgaaatagtaccaatt	5	10	3	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	3	121825056	121825056	C	G	SNP	CD86	ENST00000478741	human	ensembl	69_37n	1	novel	nonsense	c.398	p.S133*	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD86	HGNC	ENSG00000114013	114	0	0	84	19	18.45	-	-	-	G	121825056	C	G	121825056	4	3	502	1	0	0	0	0	0	1	0	0	3072	827	29	2	426	2	CD86	3	121825056	Nonsense_Mutation	SNP	C	TCGA-BH-A0BO-01A-23D-A12B-09	81295527	121825056	76197374	3	45779										
TMCC1	0	genome.wustl.edu	37	chr3	129370451	129370451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tgcgagtcttcatgagggggAccacacagttggctacagtg	14	9	2	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	3	129370451	129370451	A	C	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1835	p.V612G	0.995	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	217	1	0.46	141	25	15.06	-	-	-	C	129370451	A	C	129370451	3	2	502	1	0	0	0	0	1	0	0	0	16087	275	10	5	130	5	TMCC1	3	129370451	Missense_Mutation	SNP	A	TCGA-BH-A0BO-01A-23D-A12B-09	7545395	129370451	68651979	4	45780										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	229	0	0	204	28	12.07	-	-	-	G	178952085	A	G	178952085	3	3	502	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0BO-01A-23D-A12B-09	49581634	178952085	19070345	5	45781										
HTT	0	genome.wustl.edu	37	chr4	3148607	3148607	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	gattctgaccctgctctcgtCagcttggttcccattggatc	9	13	3	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	4	3148607	3148607	C	G	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	nonsense	c.3227	p.S1076*	0.998	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	312	0	0	273	61	18.26	-	-	-	G	3148607	C	G	3148607	4	3	502	1	0	0	0	0	0	1	0	0	7511	838	29	2	3325	2	HTT	4	3148607	Nonsense_Mutation	SNP	C	TCGA-BH-A0BO-01A-23D-A12B-09		3148607	188005669	6	45782										
PPP3CA	0	genome.wustl.edu	37	chr4	101950343	101950343	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	cttcatcagcctcaatagccTcaacagtagctgaagagaag	8	11	4	2			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	4	101950343	101950343	T	C	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.1349	p.E450G	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	154	0	0	126	17	11.89	-	-	-	C	101950343	T	C	101950343	3	2	502	1	0	0	0	0	1	0	0	0	12474	1551	54	5	224	5	PPP3CA	4	101950343	Missense_Mutation	SNP	T	TCGA-BH-A0BO-01A-23D-A12B-09	98801736	101950343	89203933	7	45783										
LIFR	0	genome.wustl.edu	37	chr5	38506735	38506735	+	Splice_Site	DEL	C	C	-													0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	ttgaggagtatctggtggatCtaacagaaaaaaaatgcagg							TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	5	38506735	38506735	C	-	DEL	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	splice_site_del	c.992-1	e7-1	1.000	-	-	-	no_errors	LIFR	HGNC	ENSG00000113594	150	0	0	111	19	14.39	-	-	-	-	38506735	C	-	38506735	8	5	502	1	0	1	0	1	0	0	1	0	8835	927	32	0	2354	0	LIFR	5	38506735	Splice_Site	DEL	C	TCGA-BH-A0BO-01A-23D-A12B-09		38506735	142408525	8	45784										
MAP3K1	0	genome.wustl.edu	37	chr5	56183240	56183241	+	Frame_Shift_Ins	INS	-	-	T													0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tgacagcactggtcagagacINStaagaattgcagattttgga							TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	5	56183240	56183241	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.4150_4151	p.R1385fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	417	0	0	305	46	13.11	-	-	-	T	56183241	-	T	56183240	7	5	502	1	0	1	1	0	0	0	0	0	9314	564	20	0	4220	0	MAP3K1	5	56183240	Frame_Shift_Ins	INS	-	TCGA-BH-A0BO-01A-23D-A12B-09	17676505	56183240	124732020	9	45785			1	81		2	2	57	N	-	3.979665e-05
MAP3K1	0	genome.wustl.edu	37	chr5	56183296	56183297	+	Frame_Shift_Ins	INS	-	-	G													0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	catcaaaaggaactggtgcaINSggagagtttcagggacaatt							TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	5	56183296	56183297	-	G	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.4206_4207	p.E1403fs	0.930:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	498	0	0	389	60	13.36	-	-	-	G	56183297	-	G	56183296	7	5	502	1	0	1	1	0	0	0	0	0	9314	175	7	0	4276	0	MAP3K1	5	56183296	Frame_Shift_Ins	INS	-	TCGA-BH-A0BO-01A-23D-A12B-09	56	56183296	124731964	10	45786			1	81		2	2	57	N	-	3.979665e-05
ADAMTS6	0	genome.wustl.edu	37	chr5	64747324	64747324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	agtaataagaactgcattatCgtggtgggcaatcccatttt	9	7	0	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	5	64747324	64747324	C	T	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.1051	p.D351N	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	522	0	0	385	76	16.41	-	-	-	T	64747324	C	T	64747324	3	4	502	1	0	0	0	0	1	0	0	0	270	884	31	1	2378	1	ADAMTS6	5	64747324	Missense_Mutation	SNP	C	TCGA-BH-A0BO-01A-23D-A12B-09	8564028	64747324	116167936	11	45787										
SPINK5	0	genome.wustl.edu	37	chr5	147484520	147484520	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	ttcggtttcttaaagtcaacAagaagaaagagcaagagcaa	9	6	2	4			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	5	147484520	147484520	A	T	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	missense	c.1436	p.Q479L	0.801	pfam_Kazal-type_dom,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	362	0	0	289	53	15.5	-	-	-	T	147484520	A	T	147484520	3	4	502	1	0	0	0	0	1	0	0	0	15153	130	5	5	1498	5	SPINK5	5	147484520	Missense_Mutation	SNP	A	TCGA-BH-A0BO-01A-23D-A12B-09	82737196	147484520	33430740	12	45788										
CPNE5	0	genome.wustl.edu	37	chr6	36713227	36713227	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tacagctgcacagtgcgcagGctgcggtggtaggcctccag	15	12	0	0			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	6	36713227	36713227	G	A	SNP	CPNE5	ENST00000244751	human	ensembl	69_37n	-1	known	silent	c.1266	p.S422	1.000	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772	24	0	0	32	7	17.5	-	-	-	A	36713227	G	A	36713227	2	1	502	1	0	0	0	0	0	0	0	1	3845	1194	42	4		4	CPNE5	6	36713227	Silent	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09		36713227	134401840	13	45789										
EFHA2	0	genome.wustl.edu	37	chr8	16944529	16944529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	gaaattaaaggagatgaagaAaagcgtgcaatgctggtaag	13	3	0	3			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	8	16944529	16944529	A	G	SNP	EFHA2	ENST00000519044	human	ensembl	69_37n	1	novel	missense	c.407	p.K136R	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EFHA2	HGNC	ENSG00000155970	529	0	0	375	65	14.77	-	-	-	G	16944529	A	G	16944529	3	3	502	1	0	0	0	0	1	0	0	0	4979	11	1	5	860	5	EFHA2	8	16944529	Missense_Mutation	SNP	A	TCGA-BH-A0BO-01A-23D-A12B-09		16944529	129419493	14	45790										
FAM171A1	0	genome.wustl.edu	37	chr10	15290661	15290661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	gcttctggtcaaaccgccacGccgcgacataggcattgtgc	11	14	2	0			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	10	15290661	15290661	G	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.731	p.A244V	0.966	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	47	0	0	51	13	20.31	-	-	-	A	15290661	G	A	15290661	3	1	502	1	0	0	0	0	1	0	0	0	5530	1087	38	1	1957	1	FAM171A1	10	15290661	Missense_Mutation	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09		15290661	120244086	15	45791										
TTC17	0	genome.wustl.edu	37	chr11	43428954	43428954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	aagctggactatactggagaGcagtaggaaatagcactttt	11	6	0	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	11	43428954	43428954	G	A	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.1891	p.A631T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	324	0	0	249	40	13.84	-	-	-	A	43428954	G	A	43428954	3	1	502	1	0	0	0	0	1	0	0	0	16781	971	34	4	1949	4	TTC17	11	43428954	Missense_Mutation	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09		43428954	91577562	16	45792										
LRRIQ1	0	genome.wustl.edu	37	chr12	85460647	85460647	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tactaatattcagtgtcttgAactttcatataataaaatta	3	5	3	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	12	85460647	85460647	A	C	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.2666	p.E889A	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	254	1	0.39	178	45	20.18	-	-	-	C	85460647	A	C	85460647	3	2	502	1	0	0	0	0	1	0	0	0	9095	246	9	5	2700	5	LRRIQ1	12	85460647	Missense_Mutation	SNP	A	TCGA-BH-A0BO-01A-23D-A12B-09		85460647	48391248	17	45793										
HCFC2	0	genome.wustl.edu	37	chr12	104461732	104461732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tttttttttttaggcaagtcGttggttatggaaaaaagtga	10	2	0	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	12	104461732	104461732	G	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.320	p.R107H	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	420	0	0	306	53	14.64	-	-	-	A	104461732	G	A	104461732	3	1	502	1	0	0	0	0	1	0	0	0	7044	1145	40	1	330	1	HCFC2	12	104461732	Missense_Mutation	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09	19001085	104461732	29390163	18	45794										
GTF2F2	0	genome.wustl.edu	37	chr13	45694797	45694797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	ccggctgcagacccatggccGagcgcggggaactcgacttg	15	14	0	1			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	13	45694797	45694797	G	A	SNP	GTF2F2	ENST00000340473	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	1.000	superfamily_TFIIF_interaction,pirsf_TFIIF-beta_subgr	pfam_TFIIF_beta,superfamily_TFIIF_interaction,pirsf_TFIIF-beta_subgr	-	no_errors	GTF2F2	HGNC	ENSG00000188342	30	0	0	22	4	15.38	-	-	-	A	45694797	G	A	45694797	3	1	502	1	0	0	0	0	1	0	0	0	6910	1059	37	1	9	1	GTF2F2	13	45694797	Missense_Mutation	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09		45694797	69475081	19	45795										
ADAMTSL5	0	genome.wustl.edu	37	chr19	1507614	1507614	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	ctggcgccctcggggatcagGgtcacgttccagtacccagc	13	15	2	0			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	19	1507614	1507614	G	A	SNP	ADAMTSL5	ENST00000413997	human	ensembl	69_37n	-1	known	silent	c.660	p.T220	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Netrin_module_non-TIMP,pfam_Thrombospondin_1_rpt,superfamily_TIMP-like_OB-fold,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL5	HGNC	ENSG00000185761	53	0	0	47	9	15.79	-	-	-	A	1507614	G	A	1507614	2	1	502	1	0	0	0	0	0	0	0	1	278	1219	43	4		4	ADAMTSL5	19	1507614	Silent	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09		1507614	57621369	20	45796										
RFX2	0	genome.wustl.edu	37	chr19	6001886	6001886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	tggggaagctggggctgccgGcatgctgcttcaggacctgg	18	10	1	0			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	19	6001886	6001886	G	T	SNP	RFX2	ENST00000303657	human	ensembl	69_37n	-1	known	missense	c.1799	p.A600D	0.573	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903	42	0	0	28	5	15.15	-	-	-	T	6001886	G	T	6001886	3	4	502	1	0	0	0	0	1	0	0	0	13346	1203	42	4	388	4	RFX2	19	6001886	Missense_Mutation	SNP	G	TCGA-BH-A0BO-01A-23D-A12B-09	4494272	6001886	53127097	21	45797										
ZCCHC12	0	genome.wustl.edu	37	chrX	117960412	117960412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.369610523384465	2.334	7.78	0	0.1	0.5224358974359	0	caatgacttctctgagccacTgtaagggaccacccccaggt	9	14	1	2			TCGA-BH-A0BO-01A-23D-A12B-09	TCGA-BH-A0BO-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63af8579-99b1-4f81-92a6-4e3a31715be1	42ae8faa-3a1c-4068-a71e-612c411bf102	X	117960412	117960412	T	C	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	1	known	missense	c.1205	p.L402P	0.000	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	58	0	0	53	8	13.11	-	-	-	C	117960412	T	C	117960412	3	2	502	1	0	0	0	0	1	0	0	0	17677	1580	55	5	1207	5	ZCCHC12	23	117960412	Missense_Mutation	SNP	T	TCGA-BH-A0BO-01A-23D-A12B-09		117960412	37310148	22	45798										
OR4F5	0	genome.wustl.edu	37	chr1	69523	69523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tggctgtcacatggggaattGgctttctccattcggtgagc	13	9	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	69523	69523	G	T	SNP	OR4F5	ENST00000335137	human	ensembl	69_37n	1	known	missense	c.433	p.G145C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F5	HGNC	ENSG00000186092	581	2	0.34	527	81	13.32	-	-	-	T	69523	G	T	69523	3	4	503	1	0	0	0	0	1	0	0	0	11138	1348	47	4	435	4	OR4F5	1	69523	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		69523	249181098	1	45799										
FAM167B	0	genome.wustl.edu	37	chr1	32713189	32713189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggtccagagccaggcctggcGcagggcccaagccaaacctg	14	15	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	32713189	32713189	G	A	SNP	FAM167B	ENST00000373582	human	ensembl	69_37n	1	known	missense	c.167	p.R56H	0.000	NULL	pfam_FAM167	-	no_errors	FAM167B	HGNC	ENSG00000183615	56	0	0	42	9	17.65	-	-	-	A	32713189	G	A	32713189	3	1	503	1	0	0	0	0	1	0	0	0	5524	1087	38	1	169	1	FAM167B	1	32713189	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	32643666	32713189	216537432	2	45800										
SPTA1	0	genome.wustl.edu	37	chr1	158648298	158648298	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	acctcattttgcttagactgAattaagggtaggtcaggatg	11	6	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	158648298	158648298	A	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.705	p.I235	0.023	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	103	0	0	95	21	18.1	-	-	-	T	158648298	A	T	158648298	2	4	503	1	0	0	0	0	0	0	0	1	15207	242	9	5		5	SPTA1	1	158648298	Silent	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09	125935109	158648298	90602323	3	45801										
RASAL2	0	genome.wustl.edu	37	chr1	178435229	178435229	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaagacagcaggaagaaaaaGatagccagatgaaaagcatc	11	6	0	5			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	178435229	178435229	G	T	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.3562	p.D1188Y	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	83	0	0	85	14	14.14	-	-	-	T	178435229	G	T	178435229	3	4	503	1	0	0	0	0	1	0	0	0	13147	942	33	2	3662	2	RASAL2	1	178435229	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	19786931	178435229	70815392	4	45802										
OBSCN	0	genome.wustl.edu	37	chr1	228432172	228432172	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggcatggaggtcaaagggtgCacacggaggctggtgctgcc	18	9	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	228432172	228432172	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.3381	p.C1127	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	390	0	0	179	37	17.13	-	-	-	T	228432172	C	T	228432172	2	4	503	1	0	0	0	0	0	0	0	1	10885	718	25	4		4	OBSCN	1	228432172	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	49996943	228432172	20818449	5	45803										
ACTN2	0	genome.wustl.edu	37	chr1	236914954	236914954	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccggaccaagtgggacaaggTgggtggctgagggcctggtg	20	8	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	236914954	236914954	T	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	splice_site	c.1839+2	e15+2	1.000	-	-	-	no_errors	ACTN2	HGNC	ENSG00000077522	341	0	0	144	49	25.26	-	-	-	A	236914954	T	A	236914954	5	1	503	1	0	0	0	0	0	0	1	0	205	1710	59	5	1899	5	ACTN2	1	236914954	Splice_Site	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	8482782	236914954	12335667	6	45804										
TRIM58	0	genome.wustl.edu	37	chr1	248039226	248039226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgtaaagctggatcccgccaCggcgcacccgagtctgctct	11	15	2	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	1	248039226	248039226	C	T	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	missense	c.896	p.T299M	0.999	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	121	0	0	107	27	20.15	-	-	-	T	248039226	C	T	248039226	3	4	503	1	0	0	0	0	1	0	0	0	16627	536	19	1	918	1	TRIM58	1	248039226	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	11124272	248039226	1211395	7	45805										
NLRC4	0	genome.wustl.edu	37	chr2	32476391	32476391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agccccagagcatggcaattCgctgcagcagagtggacttg	13	11	0	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	32476391	32476391	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.542	p.R181Q	0.989	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	117	0	0	104	16	13.33	-	-	-	T	32476391	C	T	32476391	3	4	503	1	0	0	0	0	1	0	0	0	10541	884	31	1	2556	1	NLRC4	2	32476391	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		32476391	210722982	8	45806										
STRN	0	genome.wustl.edu	37	chr2	37111155	37111155	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aacccacagatggctgcaatGaaggaagttcatcaacatct	8	10	3	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	37111155	37111155	G	A	SNP	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	missense	c.1106	p.S369L	1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	232	0	0	193	35	15.35	-	-	-	A	37111155	G	A	37111155	3	1	503	1	0	0	0	0	1	0	0	0	15420	1294	45	2	1276	2	STRN	2	37111155	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	4634764	37111155	206088218	9	45807										
MTIF2	0	genome.wustl.edu	37	chr2	55463924	55463924	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cgttttgacaattgaaatgtCatctttatggtgtttcaatg	8	5	3	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	55463924	55463924	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	69_37n	-1	known	missense	c.2044	p.D682N	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	314	1	0.32	187	77	29.17	-	-	-	T	55463924	C	T	55463924	3	4	503	1	0	0	0	0	1	0	0	0	10006	826	29	2	143	2	MTIF2	2	55463924	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	18352769	55463924	187735449	10	45808										
CTNNA2	0	genome.wustl.edu	37	chr2	80620360	80620360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaaggaaagaaaaaggagatCctctcaacattgcgattgat	10	6	1	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	80620360	80620360	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1183	p.P395S	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	81	0	0	96	15	13.51	-	-	-	T	80620360	C	T	80620360	3	4	503	1	0	0	0	0	1	0	0	0	4045	855	30	2	899	2	CTNNA2	2	80620360	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	25156436	80620360	162579013	11	45809										
MAP4K4	0	genome.wustl.edu	37	chr2	102476239	102476239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccgcagcactcgcagcagccGccaccaccgcagcaggaaag	11	18	0	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	102476239	102476239	G	A	SNP	MAP4K4	ENST00000421882	human	ensembl	69_37n	1	novel	missense	c.835	p.A279T	0.047	superfamily_Kinase-like_dom	pfam_Citron,superfamily_Kinase-like_dom,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K4	HGNC	ENSG00000071054	105	0	0	57	13	18.57	-	-	-	A	102476239	G	A	102476239	3	1	503	1	0	0	0	0	1	0	0	0	9333	1074	38	1	1675	1	MAP4K4	2	102476239	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	21855879	102476239	140723134	12	45810										
LRP1B	0	genome.wustl.edu	37	chr2	141253162	141253162	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gatttgcagccatttgggttAtcaggttgtatttcataccc	9	8	2	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	141253162	141253162	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.9006	p.D3002E	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	422	0	0	214	100	31.85	-	-	-	T	141253162	A	T	141253162	3	4	503	1	0	0	0	0	1	0	0	0	9021	446	16	5	4937	5	LRP1B	2	141253162	Missense_Mutation	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09	38776923	141253162	101946211	13	45811										
KCNH7	0	genome.wustl.edu	37	chr2	163302698	163302698	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tattaaaatatctatgataaAcataatatccacaatcaagt	2	6	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	163302698	163302698	A	T	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	missense	c.1384	p.F462I	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	169	0	0	124	29	18.83	-	-	-	T	163302698	A	T	163302698	3	4	503	1	0	0	0	0	1	0	0	0	8091	43	2	5	2312	5	KCNH7	2	163302698	Missense_Mutation	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09	22049536	163302698	79896675	14	45812										
FIGN	0	genome.wustl.edu	37	chr2	164467143	164467143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagtactgtaggaaggagggGtcagagccctactggactgg	16	8	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	164467143	164467143	G	A	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.1199	p.T400I	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	190	0	0	116	36	23.53	-	-	-	A	164467143	G	A	164467143	3	1	503	1	0	0	0	0	1	0	0	0	5937	1261	44	4	1084	4	FIGN	2	164467143	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	1164445	164467143	78732230	15	45813										
CHN1	0	genome.wustl.edu	37	chr2	175673727	175673727	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agtgcaccagtgataatgttGatatcttcatacatgttcac	7	8	3	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	175673727	175673727	G	A	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	silent	c.1008	p.I336	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	353	0	0	188	31	14.16	-	-	-	A	175673727	G	A	175673727	2	1	503	1	0	0	0	0	0	0	0	1	3391	1280	45	2		2	CHN1	2	175673727	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	11206584	175673727	67525646	16	45814										
TTN	0	genome.wustl.edu	37	chr2	179479066	179479066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgtcaaaggcagctggtggtCcgggtttatctgtgtatggc	15	7	2	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	179479066	179479066	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41354	p.G13785V	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	91	0	0	75	18	19.35	-	-	-	A	179479066	C	A	179479066	3	1	503	1	0	0	0	0	1	0	0	0	16832	855	30	2	59039	2	TTN	2	179479066	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	3805339	179479066	63720307	17	45815										
NEUROD1	0	genome.wustl.edu	37	chr2	182542944	182542944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggtaggagtaggggtgtacaGggaaggaagcgctggccgtc	20	6	0	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	2	182542944	182542944	G	A	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	missense	c.644	p.P215L	0.910	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	82	0	0	40	36	47.37	-	-	-	A	182542944	G	A	182542944	3	1	503	1	0	0	0	0	1	0	0	0	10420	1000	35	4	430	4	NEUROD1	2	182542944	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	3063878	182542944	60656429	18	45816										
C3orf35	0	genome.wustl.edu	37	chr3	37476359	37476359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaaaactgaagttcagaaaaGggaggggactgactcaatcc	12	7	2	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	37476359	37476359	G	A	SNP	C3orf35	ENST00000328376	human	ensembl	69_37n	1	known	missense	c.251	p.R84K	0.001	NULL	NULL	-	no_errors	C3orf35	HGNC	ENSG00000198590	82	0	0	67	17	20.24	-	-	-	A	37476359	G	A	37476359	3	1	503	1	0	0	0	0	1	0	0	0	2245	1000	35	4	391	4	C3orf35	3	37476359	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		37476359	160546071	19	45817										
CCDC13	0	genome.wustl.edu	37	chr3	42754772	42754772	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cgctcctcctgcagcttcctCtctgactccaggagcttgct	8	17	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	42754772	42754772	C	G	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	missense	c.1755	p.E585D	0.949	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	155	0	0	73	11	13.1	-	-	-	G	42754772	C	G	42754772	3	3	503	1	0	0	0	0	1	0	0	0	2790	912	32	2	404	2	CCDC13	3	42754772	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	5278413	42754772	155267658	20	45818										
EPHA3	0	genome.wustl.edu	37	chr3	89176423	89176423	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	atctcttatccatcacatggGgtgagttcaataaactatca	6	9	4	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	89176423	89176423	G	T	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	silent	c.153	p.G51	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	183	0	0	153	41	21.13	-	-	-	T	89176423	G	T	89176423	2	4	503	1	0	0	0	0	0	0	0	1	5205	1246	43	4		4	EPHA3	3	89176423	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	46421651	89176423	108846007	21	45819										
COL6A5	0	genome.wustl.edu	37	chr3	130119918	130119918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tcccttaacacaactgctcaTcatgagttttctagctttga	5	11	3	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	130119918	130119918	T	C	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.4035	p.H1345	0.002	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	306	0	0	124	61	32.97	-	-	-	C	130119918	T	C	130119918	2	2	503	1	0	0	0	0	0	0	0	1	3732	1432	50	5		5	COL6A5	3	130119918	Silent	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	40943495	130119918	67902512	22	45820										
GYG1	0	genome.wustl.edu	37	chr3	148744285	148744285	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tttctcttgtggcttctgtaGaaaggtatgcagaacttaaa	9	6	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	148744285	148744285	G	C	SNP	GYG1	ENST00000345003	human	ensembl	69_37n	1	known	missense	c.875	p.R292T	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754	311	1	0.32	288	36	11.11	-	-	-	C	148744285	G	C	148744285	3	2	503	1	0	0	0	0	1	0	0	0	6956	942	33	2	901	2	GYG1	3	148744285	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	18624367	148744285	49278145	23	45821										
KNG1	0	genome.wustl.edu	37	chr3	186459855	186459855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cctagccaagccaggtgtaaCagttaccttttctgactttc	7	12	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	3	186459855	186459855	C	T	SNP	KNG1	ENST00000265023	human	ensembl	69_37n	1	known	missense	c.1670	p.T557I	0.001	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889	257	0	0	114	32	21.62	-	-	-	T	186459855	C	T	186459855	3	4	503	1	0	0	0	0	1	0	0	0	8480	478	17	4	1708	4	KNG1	3	186459855	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	37715570	186459855	11562575	24	45822										
WHSC2	0	genome.wustl.edu	37	chr4	1986593	1986593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggaaccacgctgggcgtggaGggaaggtagctcgtggaggg	21	7	0	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	4	1986593	1986593	G	C	SNP	WHSC2	ENST00000453740	human	ensembl	69_37n	-1	novel	missense	c.680	p.P227R	0.067	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	WHSC2	HGNC	ENSG00000185049	391	0	0	518	79	13.21	-	-	-	C	1986593	G	C	1986593	3	2	503	1	0	0	0	0	1	0	0	0	17461	987	35	4	624	4	WHSC2	4	1986593	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		1986593	189167683	25	45823										
HPSE	0	genome.wustl.edu	37	chr4	84216541	84216542	+	Frame_Shift_Del	DEL	TA	TA	-													0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	atttcttatcacaaaaaaacTatatgagaaagctggcaagc							TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	4	84216541	84216542	TA	-	DEL	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	frame_shift_del	c.1588_1587	p.Y529fs	0.412:0.338	NULL	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083	117	0	0	105	192	62.54	-	-	-	-	84216542	TA	-	84216541	7	5	503	1	0	1	0	1	0	0	0	0	7395	1522	53	0	47	0	HPSE	4	84216541	Frame_Shift_Del	DEL	TA	TCGA-BH-A0BP-01A-11D-A10Y-09	82229948	84216541	106937735	26	45824										
DCHS2	0	genome.wustl.edu	37	chr4	155410719	155410719	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tccacactctgcggtgtggaCcatctttgattgcagggagc	12	11	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	4	155410719	155410719	C	A	SNP	DCHS2	ENST00000339452	human	ensembl	69_37n	-1	known	missense	c.1789	p.V597F	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	46	0	0	31	8	20.51	-	-	-	A	155410719	C	A	155410719	3	1	503	1	0	0	0	0	1	0	0	0	4319	507	18	4	9295	4	DCHS2	4	155410719	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	71194178	155410719	35743557	27	45825										
LPCAT1	0	genome.wustl.edu	37	chr5	1463771	1463771	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccgcaaccctgggtcctaatCcagcttcttgcgaacaggct	9	15	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	5	1463771	1463771	C	G	SNP	LPCAT1	ENST00000283415	human	ensembl	69_37n	-1	known	missense	c.1600	p.D534H	0.788	NULL	pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	LPCAT1	HGNC	ENSG00000153395	127	0	0	156	31	16.49	-	-	-	G	1463771	C	G	1463771	3	3	503	1	0	0	0	0	1	0	0	0	8976	855	30	2	8	2	LPCAT1	5	1463771	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		1463771	179451489	28	45826										
EGFLAM	0	genome.wustl.edu	37	chr5	38407076	38407076	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	accacggtggctccccagccCattcccatacagagaaaggg	10	15	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	5	38407076	38407076	C	A	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	silent	c.975	p.P325	0.998	NULL	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	552	1	0.18	352	59	14.36	-	-	-	A	38407076	C	A	38407076	2	1	503	1	0	0	0	0	0	0	0	1	5001	581	21	4		4	EGFLAM	5	38407076	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	36943305	38407076	142508184	29	45827										
PDE4D	0	genome.wustl.edu	37	chr5	58334711	58334711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tggaggccatctcactgacgGagtgcctggtctgtagggtc	15	10	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	5	58334711	58334711	G	T	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.896	p.S299Y	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	230	1	0.43	83	29	25.89	-	-	-	T	58334711	G	T	58334711	3	4	503	1	0	0	0	0	1	0	0	0	11715	1174	41	2	1573	2	PDE4D	5	58334711	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	19927635	58334711	122580549	30	45828										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725012	140725012	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	caaccccagaggagcctccaTcttctcagtgacagcccagg	9	16	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	5	140725012	140725012	T	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.1412	p.I471N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	200	0	0	179	28	13.53	-	-	-	A	140725012	T	A	140725012	3	1	503	1	0	0	0	0	1	0	0	0	11628	1435	50	5	1414	5	PCDHGA3	5	140725012	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	82390301	140725012	40190248	31	45829										
HIST1H1E	0	genome.wustl.edu	37	chr6	26156800	26156800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagcggcgtatctttggccgCtctcaagaaagcgctggcag	13	12	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	26156800	26156800	C	T	SNP	HIST1H1E	ENST00000304218	human	ensembl	69_37n	1	known	missense	c.182	p.A61V	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	79	0	0	64	30	31.91	-	-	-	T	26156800	C	T	26156800	3	4	503	1	0	0	0	0	1	0	0	0	7177	797	28	4	184	4	HIST1H1E	6	26156800	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		26156800	144958267	32	45830										
TULP1	0	genome.wustl.edu	37	chr6	35477415	35477415	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agcccttgccatccacctttCttcttcagggctttcttgtc	6	15	4	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	35477415	35477415	C	A	SNP	TULP1	ENST00000229771	human	ensembl	69_37n	-1	known	missense	c.714	p.K238N	1.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041	375	0	0	156	48	23.53	-	-	-	A	35477415	C	A	35477415	3	1	503	1	0	0	0	0	1	0	0	0	16870	912	32	2	950	2	TULP1	6	35477415	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	9320615	35477415	135637652	33	45831										
BRPF3	0	genome.wustl.edu	37	chr6	36177594	36177594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agcaggctgccatggagctgGagctgatgccattcaatgtt	13	9	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	36177594	36177594	G	C	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.1768	p.E590Q	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	258	0	0	79	22	21.78	-	-	-	C	36177594	G	C	36177594	3	2	503	1	0	0	0	0	1	0	0	0	1529	1175	41	2	1782	2	BRPF3	6	36177594	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	700179	36177594	134937473	34	45832										
ENPP4	0	genome.wustl.edu	37	chr6	46108029	46108029	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ttaatgtgatcattacaagtGatcatgggatgacccagtgt	10	6	2	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	46108029	46108029	G	T	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.709	p.D237Y	1.000	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	195	0	0	44	27	38.03	-	-	-	T	46108029	G	T	46108029	3	4	503	1	0	0	0	0	1	0	0	0	5169	1290	45	2	711	2	ENPP4	6	46108029	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	9930435	46108029	125007038	35	45833										
DOPEY1	0	genome.wustl.edu	37	chr6	83847715	83847715	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aaatcttcaaatgaaaaactCaaacaaaccagtgtattctt	3	8	4	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	83847715	83847715	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	silent	c.3954	p.L1318	0.991	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	56	0	0	37	18	32.73	-	-	-	T	83847715	C	T	83847715	2	4	503	1	0	0	0	0	0	0	0	1	4742	813	29	2		2	DOPEY1	6	83847715	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	37739686	83847715	87267352	36	45834										
PLG	0	genome.wustl.edu	37	chr6	161137755	161137755	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccttggtgtttcaccaccgaCcccaacaagcgctgggaact	9	15	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	161137755	161137755	C	A	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.747	p.D249E	0.966	pirsf_Pept_S1A_plasmin,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	99	0	0	48	18	27.27	-	-	-	A	161137755	C	A	161137755	3	1	503	1	0	0	0	0	1	0	0	0	12160	506	18	4	777	4	PLG	6	161137755	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	77290040	161137755	9977312	37	45835										
MAP3K4	0	genome.wustl.edu	37	chr6	161470713	161470713	+	Frame_Shift_Del	DEL	G	G	-													0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agaacaaatctctgatcctaGggtaccggaaatcagacagc							TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	6	161470713	161470713	G	-	DEL	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	frame_shift_del	c.1409	p.V471fs	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	109	0	0	32	24	42.86	-	-	-	-	161470713	G	-	161470713	7	5	503	1	0	1	0	1	0	0	0	0	9323	1000	35	0	1419	0	MAP3K4	6	161470713	Frame_Shift_Del	DEL	G	TCGA-BH-A0BP-01A-11D-A10Y-09	332958	161470713	9644354	38	45836										
HOXA3	0	genome.wustl.edu	37	chr7	27148069	27148069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctccggggggcacggggctgCgacttggagactggcccccc	17	15	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	27148069	27148069	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	69_37n	-1	known	missense	c.797	p.R266H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997	252	0	0	153	63	29.17	-	-	-	T	27148069	C	T	27148069	3	4	503	1	0	0	0	0	1	0	0	0	7344	768	27	1	538	1	HOXA3	7	27148069	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		27148069	131990594	39	45837										
TAX1BP1	0	genome.wustl.edu	37	chr7	27856569	27856569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gccacctgtcagagtcccctCttggggactggaagacaatg	12	12	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	27856569	27856569	C	G	SNP	TAX1BP1	ENST00000396319	human	ensembl	69_37n	1	known	missense	c.1997	p.S666C	0.004	NULL	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	63	0	0	78	32	29.09	-	-	-	G	27856569	C	G	27856569	3	3	503	1	0	0	0	0	1	0	0	0	15686	913	32	2	2051	2	TAX1BP1	7	27856569	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	708500	27856569	131282094	40	45838										
GCK	0	genome.wustl.edu	37	chr7	44189394	44189394	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cctcgcactgatggtcttcgTagtagcaggagatcatcgtg	12	10	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	44189394	44189394	T	A	SNP	GCK	ENST00000345378	human	ensembl	69_37n	-1	known	missense	c.647	p.Y216F	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633	390	0	0	154	41	21.03	-	-	-	A	44189394	T	A	44189394	3	1	503	1	0	0	0	0	1	0	0	0	6343	1638	57	5	773	5	GCK	7	44189394	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	16332825	44189394	114949269	41	45839										
PCLO	0	genome.wustl.edu	37	chr7	82764214	82764214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gtggggacagtttggccagcGgtaggtcgtgggccaggggg	22	7	0	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	82764214	82764214	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.2652	p.T884	0.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	202	0	0	157	30	16.04	-	-	-	A	82764214	G	A	82764214	2	1	503	1	0	0	0	0	0	0	0	1	11656	1103	39	1		1	PCLO	7	82764214	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	38574820	82764214	76374449	42	45840										
PEX1	0	genome.wustl.edu	37	chr7	92143236	92143236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cactggagttatcctgactaCggcatgcatttctatattta	7	9	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	92143236	92143236	C	T	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.1285	p.V429I	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	76	0	0	84	28	25	-	-	-	T	92143236	C	T	92143236	3	4	503	1	0	0	0	0	1	0	0	0	11809	536	19	1	2642	1	PEX1	7	92143236	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	9379022	92143236	66995427	43	45841										
CADPS2	0	genome.wustl.edu	37	chr7	122114548	122114548	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agaaataaactcatccatacCatgtttctgaaaacgatctg	5	9	3	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	122114548	122114548	C	G	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	missense	c.1885	p.G629R	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	225	0	0	137	46	25.14	-	-	-	G	122114548	C	G	122114548	3	3	503	1	0	0	0	0	1	0	0	0	2596	594	21	4	2121	4	CADPS2	7	122114548	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	29971312	122114548	37024115	44	45842										
ZNF467	0	genome.wustl.edu	37	chr7	149463318	149463318	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	accttcaccttccgaatcatCcactcctctcctggaaagtc	4	17	3	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	149463318	149463318	C	G	SNP	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	missense	c.273	p.W91C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	123	1	0.81	63	10	13.7	-	-	-	G	149463318	C	G	149463318	3	3	503	1	0	0	0	0	1	0	0	0	18023	856	30	2	1518	2	ZNF467	7	149463318	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	27348770	149463318	9675345	45	45843										
SSPO	0	genome.wustl.edu	37	chr7	149475874	149475874	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctctttctgtgcccagggctGagcctgcaatggctggggga	15	11	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	149475874	149475874	G	A	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	179	0	0	101	33	24.63	-	-	-	A	149475874	G	A	149475874	1	1	503	0	1	0	0	0	0	0	0	0	15280	1277	45	2		2	SSPO	7	149475874	RNA	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	12556	149475874	9662789	46	45844										
GIMAP1	0	genome.wustl.edu	37	chr7	150417441	150417441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccggaccccacgcgctgctcCtggtgacccagttgggtcgg	14	16	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	7	150417441	150417441	C	T	SNP	GIMAP1	ENST00000307194	human	ensembl	69_37n	1	known	silent	c.349	p.L117	0.998	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP1	HGNC	ENSG00000213203	97	0	0	36	9	20	-	-	-	T	150417441	C	T	150417441	2	4	503	1	0	0	0	0	0	0	0	1	6431	680	24	4		4	GIMAP1	7	150417441	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	941567	150417441	8721222	47	45845										
CSMD1	0	genome.wustl.edu	37	chr8	3216706	3216706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gcagaggtgcactccacacaCggcggcccccacccaggcag	12	18	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	8	3216706	3216706	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.3275	p.R1092H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	108	0	0	33	6	15.38	-	-	-	T	3216706	C	T	3216706	3	4	503	1	0	0	0	0	1	0	0	0	3976	536	19	1	7622	1	CSMD1	8	3216706	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		3216706	143147316	48	45846										
UNC5D	0	genome.wustl.edu	37	chr8	35583857	35583857	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gtttccctgggagtgtctgaGagagctgagtaccacggcaa	14	9	1	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	8	35583857	35583857	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	silent	c.1491	p.E497	0.572	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	154	0	0	122	24	16.44	-	-	-	A	35583857	G	A	35583857	2	1	503	1	0	0	0	0	0	0	0	1	17092	933	33	2		2	UNC5D	8	35583857	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	32367151	35583857	110780165	49	45847										
ZFHX4	0	genome.wustl.edu	37	chr8	77766362	77766362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	caaaccagaacctgagaagaCttctccaaaacctgaatatc	5	12	1	4			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	8	77766362	77766362	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.7205	p.T2402I	0.856	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	119	0	0	148	21	12.35	-	-	-	T	77766362	C	T	77766362	3	4	503	1	0	0	0	0	1	0	0	0	17731	565	20	4	7239	4	ZFHX4	8	77766362	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	42182505	77766362	68597660	50	45848										
ATAD2	0	genome.wustl.edu	37	chr8	124359355	124359355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agtctaatgttttatttgttCtgaattctgcatgtggaaat	8	4	3	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	8	124359355	124359355	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.2189	p.R730K	0.013	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	214	0	0	281	38	11.91	-	-	-	T	124359355	C	T	124359355	3	4	503	1	0	0	0	0	1	0	0	0	1075	913	32	2	2035	2	ATAD2	8	124359355	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	46592993	124359355	22004667	51	45849										
PARP10	0	genome.wustl.edu	37	chr8	145057946	145057946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cctccccgtctaggtctaggCcctccagggtggccagcagt	12	16	2	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	8	145057946	145057946	C	G	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.1811	p.G604A	0.750	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	54	0	0	21	14	40	-	-	-	G	145057946	C	G	145057946	3	3	503	1	0	0	0	0	1	0	0	0	11528	739	26	4	1282	4	PARP10	8	145057946	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	20698591	145057946	1306076	52	45850										
PTPLAD2	0	genome.wustl.edu	37	chr9	21011668	21011668	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	agacagcataggatattcctAtgactgataacatgctataa	7	7	0	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	21011668	21011668	A	G	SNP	PTPLAD2	ENST00000495827	human	ensembl	69_37n	-1	known	missense	c.410	p.I137T	0.958	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921	201	0	0	51	21	29.17	-	-	-	G	21011668	A	G	21011668	3	3	503	1	0	0	0	0	1	0	0	0	12857	449	16	5	300	5	PTPLAD2	9	21011668	Missense_Mutation	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09		21011668	120201763	53	45851										
IFNA4	0	genome.wustl.edu	37	chr9	21187338	21187338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaactggtggccatcaaactCctcctcggggaatccgaaat	10	12	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	21187338	21187338	C	T	SNP	IFNA4	ENST00000421715	human	ensembl	69_37n	-1	known	missense	c.193	p.E65K	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA4	HGNC	ENSG00000236637	275	0	0	195	30	13.33	-	-	-	T	21187338	C	T	21187338	3	4	503	1	0	0	0	0	1	0	0	0	7593	864	30	2	380	2	IFNA4	9	21187338	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	175670	21187338	120026093	54	45852										
UNC13B	0	genome.wustl.edu	37	chr9	35399191	35399191	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gccactgtgtgtgagaagacGgttctgaagcgtgtactgaa	14	7	1	4			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	35399191	35399191	G	A	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	silent	c.3897	p.T1299	0.126	pfam_Munc13_subgr_dom-2	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	485	0	0	137	42	23.46	-	-	-	A	35399191	G	A	35399191	2	1	503	1	0	0	0	0	0	0	0	1	17082	1103	39	1		1	UNC13B	9	35399191	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	14211853	35399191	105814240	55	45853										
MSMP	0	genome.wustl.edu	37	chr9	35754070	35754070	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gacatcaccaagcagatgatCccccagcctcctaggatccc	7	17	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	35754070	35754070	C	A	SNP	MSMP	ENST00000436428	human	ensembl	69_37n	-1	known	silent	c.57	p.G19	0.024	NULL	pfam_PSP94	-	no_errors	MSMP	HGNC	ENSG00000215183	206	0	0	63	9	12.5	-	-	-	A	35754070	C	A	35754070	2	1	503	1	0	0	0	0	0	0	0	1	9956	842	30	2		2	MSMP	9	35754070	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	354879	35754070	105459361	56	45854										
C9orf41	0	genome.wustl.edu	37	chr9	77613613	77613613	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	atcagggaaaaagatgggtcGaatctgatcagctgatctcc	11	8	4	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	77613613	77613613	G	A	SNP	C9orf41	ENST00000376834	human	ensembl	69_37n	-1	known	nonsense	c.811	p.R271*	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	119	1	0.83	66	23	25.84	-	-	-	A	77613613	G	A	77613613	4	1	503	1	0	0	0	0	0	1	0	0	2507	1066	37	1	434	1	C9orf41	9	77613613	Nonsense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	41859543	77613613	63599818	57	45855										
OLFML2A	0	genome.wustl.edu	37	chr9	127570099	127570100	+	Frame_Shift_Ins	INS	-	-	C													0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggcaccctccgggctgtggaINScccccctgtgaggcaccaca							TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	9	127570099	127570100	-	C	INS	OLFML2A	ENST00000373580	human	ensembl	69_37n	1	known	frame_shift_ins	c.1208_1209	p.V406fs	1.000:0.871	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	96	0	0	40	11	21.57	-	-	-	C	127570100	-	C	127570099	7	5	503	1	0	1	1	0	0	0	0	0	10930	275	10	0	1234	0	OLFML2A	9	127570099	Frame_Shift_Ins	INS	-	TCGA-BH-A0BP-01A-11D-A10Y-09	49956486	127570099	13643332	58	45856										
CAMK1D	0	genome.wustl.edu	37	chr10	12595305	12595305	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aagtgtatccctaagaaggcGctgaagggcaaggaaagcag	14	7	0	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	12595305	12595305	G	A	SNP	CAMK1D	ENST00000378847	human	ensembl	69_37n	1	known	silent	c.174	p.A58	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049	245	0	0	166	74	30.83	-	-	-	A	12595305	G	A	12595305	2	1	503	1	0	0	0	0	0	0	0	1	2622	1074	38	1		1	CAMK1D	10	12595305	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		12595305	122939442	59	45857										
NEBL	0	genome.wustl.edu	37	chr10	21157693	21157693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cttgtcctttcttgtattctGcctaaaatgaataaataaga	5	7	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	21157693	21157693	G	T	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	missense	c.584	p.A195E	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	138	0	0	100	26	20.63	-	-	-	T	21157693	G	T	21157693	3	4	503	1	0	0	0	0	1	0	0	0	10375	1333	46	4	2548	4	NEBL	10	21157693	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	8562388	21157693	114377054	60	45858										
SVIL	0	genome.wustl.edu	37	chr10	29839670	29839670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gcccagagaaagagaaggtcGaggaactctcggctgctggg	16	9	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	29839670	29839670	G	A	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.683	p.S228L	0.112	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	137	0	0	73	29	28.43	-	-	-	A	29839670	G	A	29839670	3	1	503	1	0	0	0	0	1	0	0	0	15512	1059	37	1	6093	1	SVIL	10	29839670	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	8681977	29839670	105695077	61	45859										
RTKN2	0	genome.wustl.edu	37	chr10	64000922	64000922	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ttctttattgctgaagtgatCagagtctttccacattagtg	8	7	3	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	64000922	64000922	C	G	SNP	RTKN2	ENST00000373789	human	ensembl	69_37n	-1	known	missense	c.349	p.D117H	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	95	0	0	74	23	23.71	-	-	-	G	64000922	C	G	64000922	3	3	503	1	0	0	0	0	1	0	0	0	13809	826	29	2	1516	2	RTKN2	10	64000922	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	34161252	64000922	71533825	62	45860										
ASCC1	0	genome.wustl.edu	37	chr10	73912678	73912678	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cgtaaagaacatccaccatgCcaggatcatcattcatgtat	6	11	3	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	73912678	73912678	C	T	SNP	ASCC1	ENST00000486689	human	ensembl	69_37n	-1	putative	nonsense	c.489	p.W163*	0.995	pfam_Kinase-A_anchor_nucl_local_sig,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_Euk_LigT	pfam_Kinase-A_anchor_nucl_local_sig,pfam_KH_dom_type_1,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_Euk_LigT,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ASCC1	HGNC	ENSG00000138303	242	0	0	156	36	18.75	-	-	-	T	73912678	C	T	73912678	4	4	503	1	0	0	0	0	0	1	0	0	1035	739	26	4	394	4	ASCC1	10	73912678	Nonsense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	9911756	73912678	61622069	63	45861										
SEC24C	0	genome.wustl.edu	37	chr10	75520490	75520490	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggttccttcggaccagcccgGggccctcagtctaattatgg	12	13	2	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	75520490	75520490	G	C	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	silent	c.870	p.R290	0.958	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	69	0	0	44	15	25.42	-	-	-	C	75520490	G	C	75520490	2	2	503	1	0	0	0	0	0	0	0	1	14084	1219	43	4		4	SEC24C	10	75520490	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	1607812	75520490	60014257	64	45862										
PLAU	0	genome.wustl.edu	37	chr10	75675049	75675049	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagctgaaaatgactgttgtGaagctgatttcccaccggga	11	9	0	4			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	75675049	75675049	G	A	SNP	PLAU	ENST00000372764	human	ensembl	69_37n	1	known	silent	c.1011	p.V337	0.929	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861	180	1	0.55	59	43	42.16	-	-	-	A	75675049	G	A	75675049	2	1	503	1	0	0	0	0	0	0	0	1	12096	1277	45	2		2	PLAU	10	75675049	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	154559	75675049	59859698	65	45863										
GRID1	0	genome.wustl.edu	37	chr10	87362343	87362343	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tctgggtgggagccaggcccCccatctccagggccgagagc	15	15	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	87362343	87362343	C	A	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.2717	p.G906V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	131	0	0	72	14	16.28	-	-	-	A	87362343	C	A	87362343	3	1	503	1	0	0	0	0	1	0	0	0	6822	623	22	4	316	4	GRID1	10	87362343	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	11687294	87362343	48172404	66	45864										
OBFC1	0	genome.wustl.edu	37	chr10	105658674	105658674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctagggctgagctgtgaaaaGgctggtcataaactttcctg	12	8	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	10	105658674	105658674	G	T	SNP	OBFC1	ENST00000224950	human	ensembl	69_37n	-1	known	missense	c.542	p.P181H	1.000	pfam_DUF1879_CST_STN1,pirsf_CST_STN1	pfam_DUF1879_CST_STN1,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960	348	1	0.29	171	23	11.86	-	-	-	T	105658674	G	T	105658674	3	4	503	1	0	0	0	0	1	0	0	0	10880	1000	35	4	584	4	OBFC1	10	105658674	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	18296331	105658674	29876073	67	45865										
MUC6	0	genome.wustl.edu	37	chr11	1016361	1016361	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tctggggagaggagtgggagGagggcacataagaagaaaca	18	4	1	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	1016361	1016361	G	T	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.6440	p.S2147Y	0.004	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	373	0	0	249	35	12.32	-	-	-	T	1016361	G	T	1016361	3	4	503	1	0	0	0	0	1	0	0	0	10052	1174	41	2	891	2	MUC6	11	1016361	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		1016361	133990155	68	45866										
OR51V1	0	genome.wustl.edu	37	chr11	5221089	5221089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgttgccaatgagaacgtggGccacgggggaaaggtgcttg	17	7	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	5221089	5221089	G	A	SNP	OR51V1	ENST00000321255	human	ensembl	69_37n	-1	known	missense	c.842	p.A281V	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	315	0	0	96	29	23.2	-	-	-	A	5221089	G	A	5221089	3	1	503	1	0	0	0	0	1	0	0	0	11180	1203	42	4	126	4	OR51V1	11	5221089	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	4204728	5221089	129785427	69	45867										
TRIM6	0	genome.wustl.edu	37	chr11	5632304	5632304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	caggtatcagcctcagagtgGatactgggtgattgggttac	14	7	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	5632304	5632304	G	A	SNP	TRIM6	ENST00000380097	human	ensembl	69_37n	1	known	missense	c.1283	p.G428E	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6	HGNC	ENSG00000121236	224	0	0	126	34	21.25	-	-	-	A	5632304	G	A	5632304	3	1	503	1	0	0	0	0	1	0	0	0	16629	1174	41	2	1313	2	TRIM6	11	5632304	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	411215	5632304	129374212	70	45868										
NUP160	0	genome.wustl.edu	37	chr11	47833723	47833723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tctgcacacaatataccctgCtgtgttactaccatagagct	6	12	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	47833723	47833723	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.2134	p.A712T	0.818	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	327	0	0	108	47	30.32	-	-	-	T	47833723	C	T	47833723	3	4	503	1	0	0	0	0	1	0	0	0	10830	797	28	4	2256	4	NUP160	11	47833723	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	42201419	47833723	87172793	71	45869										
OR8H2	0	genome.wustl.edu	37	chr11	55872841	55872841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gttcttttttgccttcttggGtactgctgaatgttaccttc	8	9	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	55872841	55872841	G	T	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.323	p.G108V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	378	0	0	258	63	19.63	-	-	-	T	55872841	G	T	55872841	3	4	503	1	0	0	0	0	1	0	0	0	11311	1261	44	4	325	4	OR8H2	11	55872841	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	8039118	55872841	79133675	72	45870										
CCND1	0	genome.wustl.edu	37	chr11	69465940	69465940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccctgctggagtcaagcctgCgccaggcccagcagaacatg	12	15	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	69465940	69465940	C	T	SNP	CCND1	ENST00000227507	human	ensembl	69_37n	1	known	missense	c.778	p.R260C	1.000	pfam_Cyclin_C,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND1	HGNC	ENSG00000110092	111	1	0.88	28	4	12.5	-	-	-	T	69465940	C	T	69465940	3	4	503	1	0	0	0	0	1	0	0	0	2945	768	27	1	796	1	CCND1	11	69465940	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	13593099	69465940	65540576	73	45871										
XRRA1	0	genome.wustl.edu	37	chr11	74632307	74632307	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gggaggtaaggccattgcctGtgaggagcaggacacggagg	19	7	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	11	74632307	74632307	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	missense	c.584	p.T195I	0.999	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	213	1	0.47	63	26	29.21	-	-	-	A	74632307	G	A	74632307	3	1	503	1	0	0	0	0	1	0	0	0	17558	1377	48	4	1842	4	XRRA1	11	74632307	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	5166367	74632307	60374209	74	45872										
IAPP	0	genome.wustl.edu	37	chr12	21526336	21526336	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	attgtgctctctgttgcattGaaccatctgaaagctacacc	7	11	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	12	21526336	21526336	G	T	SNP	IAPP	ENST00000240652	human	ensembl	69_37n	1	known	missense	c.51	p.L17F	0.000	prints_Pro-islet_amyloid_polypep	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Pro-islet_amyloid_polypep	-	no_errors	IAPP	HGNC	ENSG00000121351	232	2	0.85	121	17	12.32	-	-	-	T	21526336	G	T	21526336	3	4	503	1	0	0	0	0	1	0	0	0	7526	1281	45	2	53	2	IAPP	12	21526336	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		21526336	112325559	75	45873										
NELL2	0	genome.wustl.edu	37	chr12	44926499	44926499	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aaaaccatcagagcattcatCaatgtctggcaaaaaaagag	7	8	4	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	12	44926499	44926499	C	T	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	missense	c.1819	p.D607N	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	167	0	0	85	38	30.89	-	-	-	T	44926499	C	T	44926499	3	4	503	1	0	0	0	0	1	0	0	0	10406	826	29	2	801	2	NELL2	12	44926499	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	23400163	44926499	88925396	76	45874										
VSIG10	0	genome.wustl.edu	37	chr12	118511558	118511558	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccctacagggctgtcagctcGgcagatgtagtagccctcat	11	13	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	12	118511558	118511558	G	A	SNP	VSIG10	ENST00000359236	human	ensembl	69_37n	-1	known	nonsense	c.1165	p.R389*	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG10	HGNC	ENSG00000176834	567	0	0	159	39	19.7	-	-	-	A	118511558	G	A	118511558	4	1	503	1	0	0	0	0	0	1	0	0	17320	1124	39	1	477	1	VSIG10	12	118511558	Nonsense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	73585059	118511558	15340337	77	45875										
TCTN2	0	genome.wustl.edu	37	chr12	124191321	124191321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgtgggcttacctgtgagcaCaaggccgaccttctccctat	10	13	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	12	124191321	124191321	C	G	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	missense	c.1818	p.H606Q	0.001	NULL	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	347	0	0	108	49	31.21	-	-	-	G	124191321	C	G	124191321	3	3	503	1	0	0	0	0	1	0	0	0	15818	477	17	4	1880	4	TCTN2	12	124191321	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	5679763	124191321	9660574	78	45876										
DNAH10	0	genome.wustl.edu	37	chr12	124417966	124417966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gctggtgcaggccacctgccGgaagaacggctggccactgg	16	13	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	12	124417966	124417966	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.13031	p.R4344Q	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	69	0	0	4	8	66.67	-	-	-	A	124417966	G	A	124417966	3	1	503	1	0	0	0	0	1	0	0	0	4634	1116	39	1	13333	1	DNAH10	12	124417966	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	226645	124417966	9433929	79	45877										
SLC15A1	0	genome.wustl.edu	37	chr13	99364112	99364112	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagagtttcacattacctgcTggtcaaacaaggcccagaac	8	12	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	13	99364112	99364112	T	A	SNP	SLC15A1	ENST00000376503	human	ensembl	69_37n	-1	known	missense	c.896	p.Q299L	1.000	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	340	0	0	80	66	45.21	-	-	-	A	99364112	T	A	99364112	3	1	503	1	0	0	0	0	1	0	0	0	14487	1580	55	5	1282	5	SLC15A1	13	99364112	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09		99364112	15805766	80	45878										
GAS6	0	genome.wustl.edu	37	chr13	114530000	114530000	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctgtagaaggcgaagccgctCccggggtagaaagagcctct	14	11	1	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	13	114530000	114530000	C	T	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	silent	c.1575	p.G525	0.070	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	205	0	0	60	11	15.49	-	-	-	T	114530000	C	T	114530000	2	4	503	1	0	0	0	0	0	0	0	1	6299	842	30	2		2	GAS6	13	114530000	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	15165888	114530000	639878	81	45879										
OR6S1	0	genome.wustl.edu	37	chr14	21109676	21109676	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagaaagaagtacataggggTctgtagtcgagtatcagccc	12	8	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	14	21109676	21109676	T	A	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	missense	c.175	p.T59S	0.575	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	122	0	0	67	11	14.1	-	-	-	A	21109676	T	A	21109676	3	1	503	1	0	0	0	0	1	0	0	0	11282	1667	58	5	824	5	OR6S1	14	21109676	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09		21109676	86239864	82	45880										
STRN3	0	genome.wustl.edu	37	chr14	31381308	31381308	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tctacaggatgaaaagctaaTgcccgtactccatcaaaatg	7	10	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	14	31381308	31381308	T	C	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	silent	c.1455	p.A485	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	194	0	0	93	32	25.6	-	-	-	C	31381308	T	C	31381308	2	2	503	1	0	0	0	0	0	0	0	1	15421	1451	51	5		5	STRN3	14	31381308	Silent	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	10271632	31381308	75968232	83	45881										
MYO5C	0	genome.wustl.edu	37	chr15	52497096	52497096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ttttctgcaggagcacatgtCcttgcgcaggaagaggctgt	13	9	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	15	52497096	52497096	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	missense	c.4786	p.D1596N	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	175	0	0	63	10	13.7	-	-	-	T	52497096	C	T	52497096	3	4	503	1	0	0	0	0	1	0	0	0	10152	855	30	2	458	2	MYO5C	15	52497096	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		52497096	50034296	84	45882										
CLPX	0	genome.wustl.edu	37	chr15	65456441	65456441	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctgggatattattatatattCtcttataatgattgtacaca	5	5	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	15	65456441	65456441	C	G	SNP	CLPX	ENST00000300107	human	ensembl	69_37n	-1	known	missense	c.599	p.R200T	1.000	NULL	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	160	0	0	204	29	12.45	-	-	-	G	65456441	C	G	65456441	3	3	503	1	0	0	0	0	1	0	0	0	3586	913	32	2	1342	2	CLPX	15	65456441	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	12959345	65456441	37074951	85	45883										
MYO9A	0	genome.wustl.edu	37	chr15	72144513	72144513	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tcatagagttcaaaggtcatGagaggattgggcaaatctcg	12	6	4	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	15	72144513	72144513	G	C	SNP	MYO9A	ENST00000561618	human	ensembl	69_37n	-1	putative	nonsense	c.2984	p.S995*	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYO9A	HGNC	ENSG00000066933	150	0	0	125	17	11.97	-	-	-	C	72144513	G	C	72144513	4	2	503	1	0	0	0	0	0	1	0	0	10156	1277	45	2	1239	2	MYO9A	15	72144513	Nonsense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	6688072	72144513	30386879	86	45884										
EFTUD1	0	genome.wustl.edu	37	chr15	82533624	82533624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccattacctgtggacagactCcttccacagcatctaccaca	5	16	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	15	82533624	82533624	C	T	SNP	EFTUD1	ENST00000268206	human	ensembl	69_37n	-1	known	missense	c.365	p.G122E	1.000	pfam_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598	248	0	0	139	29	17.26	-	-	-	T	82533624	C	T	82533624	3	4	503	1	0	0	0	0	1	0	0	0	4995	855	30	2	3061	2	EFTUD1	15	82533624	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	10389111	82533624	19997768	87	45885										
MEFV	0	genome.wustl.edu	37	chr16	3293384	3293384	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cgggtcgggggaacgctggaCgcctggtactcattttcctt	14	11	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	3293384	3293384	C	T	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	silent	c.2103	p.A701	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	183	0	0	227	46	16.85	-	-	-	T	3293384	C	T	3293384	2	4	503	1	0	0	0	0	0	0	0	1	9530	523	19	1		1	MEFV	16	3293384	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		3293384	87061369	88	45886										
PRRT2	0	genome.wustl.edu	37	chr16	29824982	29824982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagcccctgagcctcactcaCcaccctcaaaaaaatccccc	3	21	3	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	29824982	29824982	C	T	SNP	PRRT2	ENST00000567659	human	ensembl	69_37n	1	known	missense	c.607	p.P203S	0.339	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	PRRT2	HGNC	ENSG00000167371	12	0	0	24	5	17.24	-	-	-	T	29824982	C	T	29824982	3	4	503	1	0	0	0	0	1	0	0	0	12690	507	18	4	609	4	PRRT2	16	29824982	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	26531598	29824982	60529771	89	45887										
CCDC113	0	genome.wustl.edu	37	chr16	58287992	58287992	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aacttgagctggtacaaaaaGaggttgcggacatgaaggat	13	5	0	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	58287992	58287992	G	T	SNP	CCDC113	ENST00000219299	human	ensembl	69_37n	1	known	nonsense	c.319	p.E107*	0.995	NULL	NULL	-	no_errors	CCDC113	HGNC	ENSG00000103021	294	0	0	98	32	24.43	-	-	-	T	58287992	G	T	58287992	4	4	503	1	0	0	0	0	0	1	0	0	2775	943	33	2	329	2	CCDC113	16	58287992	Nonsense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	28463010	58287992	32066761	90	45888										
CTCF	0	genome.wustl.edu	37	chr16	67644837	67644837	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cgccgggaagggggccaggaAgaagatgcctgccacttacc	15	12	0	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	67644837	67644837	A	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	silent	c.102	p.E34	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	58	0	0	39	11	22	-	-	-	G	67644837	A	G	67644837	2	3	503	1	0	0	0	0	0	0	0	1	4032	69	3	5		5	CTCF	16	67644837	Silent	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09	9356845	67644837	22709916	91	45889										
COG4	0	genome.wustl.edu	37	chr16	70542309	70542309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaagagagaaggattattacCttggttcgattttttctgtt	10	4	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	70542309	70542309	C	T	SNP	COG4	ENST00000323786	human	ensembl	69_37n	-1	known	missense	c.1061	p.R354K	1.000	pfam_COG_su4,smart_COG_su4	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051	412	0	0	223	65	22.57	-	-	-	T	70542309	C	T	70542309	3	4	503	1	0	0	0	0	1	0	0	0	3690	695	24	4	1356	4	COG4	16	70542309	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	2897472	70542309	19812444	92	45890										
CBFA2T3	0	genome.wustl.edu	37	chr16	88952427	88952427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cagtagcagctctgaggagtCgatgggggaggaggcgctgg	20	7	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	16	88952427	88952427	C	T	SNP	CBFA2T3	ENST00000268679	human	ensembl	69_37n	-1	known	missense	c.835	p.D279N	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993	126	0	0	32	13	28.89	-	-	-	T	88952427	C	T	88952427	3	4	503	1	0	0	0	0	1	0	0	0	2723	884	31	1	1154	1	CBFA2T3	16	88952427	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	18410118	88952427	1402326	93	45891										
TP53	0	genome.wustl.edu	37	chr17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ttggccagttggcaaaacatCttgttgagggcaggggagta	15	6	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	17	7578534	7578534	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.396	p.K132N	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	222	0	0	43	16	27.12	-	-	-	G	7578534	C	G	7578534	3	3	503	1	0	0	0	0	1	0	0	0	16477	912	32	2	902	2	TP53	17	7578534	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		7578534	73616676	94	45892										
CHD3	0	genome.wustl.edu	37	chr17	7798780	7798780	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tcccacccccccgtcctcttCaaggcagatcagagcgagag	9	17	3	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	17	7798780	7798780	C	T	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	nonsense	c.1627	p.Q543*	1.000	superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	238	0	0	45	26	36.11	-	-	-	T	7798780	C	T	7798780	4	4	503	1	0	0	0	0	0	1	0	0	3355	827	29	2	1946	2	CHD3	17	7798780	Nonsense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	220246	7798780	73396430	95	45893										
MYH1	0	genome.wustl.edu	37	chr17	10408797	10408797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gctatcgatgaattgtccttCagggatagcacttgcattta	9	8	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	17	10408797	10408797	C	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.2206	p.E736K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	191	0	0	53	40	43.01	-	-	-	T	10408797	C	T	10408797	3	4	503	1	0	0	0	0	1	0	0	0	10101	835	29	2	3697	2	MYH1	17	10408797	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	2610017	10408797	70786413	96	45894										
MRC2	0	genome.wustl.edu	37	chr17	60758213	60758213	+	Frame_Shift_Del	DEL	C	C	-													0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gagtacaagttctttgagcaCcactccacgtgggcgcaggc							TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	17	60758213	60758213	C	-	DEL	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	frame_shift_del	c.2526	p.H843fs	0.994	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	49	0	0	17	2	10.53	-	-	-	-	60758213	C	-	60758213	7	5	503	1	0	1	0	1	0	0	0	0	9830	506	18	0	2592	0	MRC2	17	60758213	Frame_Shift_Del	DEL	C	TCGA-BH-A0BP-01A-11D-A10Y-09	50349416	60758213	20436997	97	45895										
ABCA8	0	genome.wustl.edu	37	chr17	66925207	66925207	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cacctgggccattccaagcaTgaaggcaaagggactaagca	11	11	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	17	66925207	66925207	T	G	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.1108	p.M370L	0.561	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	110	1	0.9	57	16	21.92	-	-	-	G	66925207	T	G	66925207	3	3	503	1	0	0	0	0	1	0	0	0	38	1464	51	5	3761	5	ABCA8	17	66925207	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	6166994	66925207	14270003	98	45896										
LMAN1	0	genome.wustl.edu	37	chr18	57016441	57016441	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aaattcataatcatttttatCtggtgtaaagccattattga	5	5	3	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	18	57016441	57016441	C	T	SNP	LMAN1	ENST00000251047	human	ensembl	69_37n	-1	known	missense	c.667	p.D223N	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl,superfamily_HMG_superfamily	-	no_errors	LMAN1	HGNC	ENSG00000074695	185	0	0	115	24	17.27	-	-	-	T	57016441	C	T	57016441	3	4	503	1	0	0	0	0	1	0	0	0	8892	913	32	2	897	2	LMAN1	18	57016441	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		57016441	21060807	99	45897										
SHC2	0	genome.wustl.edu	37	chr19	438818	438818	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgctcttgcccaggacggacGccagggccttgttgggggcc	16	13	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	438818	438818	G	T	SNP	SHC2	ENST00000264554	human	ensembl	69_37n	-1	known	missense	c.620	p.A207E	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC2	HGNC	ENSG00000129946	222	0	0	80	13	13.98	-	-	-	T	438818	G	T	438818	3	4	503	1	0	0	0	0	1	0	0	0	14360	1087	38	3	1164	3	SHC2	19	438818	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		438818	58690165	100	45898										
ATP8B3	0	genome.wustl.edu	37	chr19	1783122	1783122	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gacccctggtcccctccgcaGaattgtgccctgagtgatga	11	14	0	4			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	1783122	1783122	G	C	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.3838	p.L1280V	0.849	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	385	0	0	101	50	33.11	-	-	-	C	1783122	G	C	1783122	3	2	503	1	0	0	0	0	1	0	0	0	1200	933	33	2	98	2	ATP8B3	19	1783122	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	1344304	1783122	57345861	101	45899										
SHD	0	genome.wustl.edu	37	chr19	4290544	4290544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tccccagcgtgcccgagctcGtcctccactacagttcacgc	8	19	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	4290544	4290544	G	A	SNP	SHD	ENST00000543264	human	ensembl	69_37n	1	known	missense	c.937	p.V313I	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHD	HGNC	ENSG00000105251	72	0	0	32	15	31.91	-	-	-	A	4290544	G	A	4290544	3	1	503	1	0	0	0	0	1	0	0	0	14364	1145	40	1	959	1	SHD	19	4290544	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	2507422	4290544	54838439	102	45900										
KDM4B	0	genome.wustl.edu	37	chr19	5131979	5131979	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gccggccgcccacccggtccCcactgtcggtggtgaagcag	14	17	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	5131979	5131979	C	A	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	missense	c.1867	p.P623T	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	75	0	0	54	10	15.62	-	-	-	A	5131979	C	A	5131979	3	1	503	1	0	0	0	0	1	0	0	0	8183	623	22	4	1909	4	KDM4B	19	5131979	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	841435	5131979	53997004	103	45901										
MUC16	0	genome.wustl.edu	37	chr19	9085910	9085910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggtccatacaattgttggtgGggtgatgggagaatgtgtca	16	4	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	9085910	9085910	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.5905	p.P1969T	0.345	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	936	1	0.11	642	82	11.31	-	-	-	T	9085910	G	T	9085910	3	4	503	1	0	0	0	0	1	0	0	0	10045	1232	43	4	37954	4	MUC16	19	9085910	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	3953931	9085910	50043073	104	45902										
MUC16	0	genome.wustl.edu	37	chr19	9090329	9090329	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gctcccgtgggcagctgtgcTggaactctgcctcccagagg	14	14	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	9090329	9090329	T	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.1486	p.S496C	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	276	1	0.36	275	49	15.12	-	-	-	A	9090329	T	A	9090329	3	1	503	1	0	0	0	0	1	0	0	0	10045	1580	55	5	42373	5	MUC16	19	9090329	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	4419	9090329	50038654	105	45903										
CACNA1A	0	genome.wustl.edu	37	chr19	13335577	13335577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgcgacgggcaggtccatccGcagaagccgctacagaaaac	12	13	0	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	13335577	13335577	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.5635	p.R1879W	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	112	0	0	145	22	13.17	-	-	-	A	13335577	G	A	13335577	3	1	503	1	0	0	0	0	1	0	0	0	2563	1086	38	1	1925	1	CACNA1A	19	13335577	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	4245248	13335577	45793406	106	45904										
SCN1B	0	genome.wustl.edu	37	chr19	35530584	35530584	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaaagcaaagagaactgcacGggcgtccaggtggccgaata	14	9	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	35530584	35530584	G	A	SNP	SCN1B	ENST00000262631	human	ensembl	69_37n	1	known	silent	c.636	p.T212	0.879	NULL	pfam_Immunoglobulin,pfam_Ig_V-set	-	no_errors	SCN1B	HGNC	ENSG00000105711	170	0	0	61	12	16.44	-	-	-	A	35530584	G	A	35530584	2	1	503	1	0	0	0	0	0	0	0	1	14003	1103	39	1		1	SCN1B	19	35530584	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	22195007	35530584	23598399	107	45905										
HKR1	0	genome.wustl.edu	37	chr19	37853010	37853010	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aaaatgttctttcttcagcaGaatcgaagccagaaattcaa	6	8	4	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	37853010	37853010	G	A	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	splice_site	c.314-1	e4-1	0.981	-	-	-	no_errors	HKR1	HGNC	ENSG00000181666	152	0	0	82	25	23.36	-	-	-	A	37853010	G	A	37853010	5	1	503	1	0	0	0	0	0	0	1	0	7245	956	33	2	327	2	HKR1	19	37853010	Splice_Site	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	2322426	37853010	21275973	108	45906										
FCGBP	0	genome.wustl.edu	37	chr19	40376946	40376946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cggcaggcagggagagtcggGcaccacctcctcccaggagt	15	14	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	40376946	40376946	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.11476	p.P3826S	0.036	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	52	0	0	33	4	10.81	-	-	-	A	40376946	G	A	40376946	3	1	503	1	0	0	0	0	1	0	0	0	5824	1203	42	4	4793	4	FCGBP	19	40376946	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	2523936	40376946	18752037	109	45907										
CEACAM18	0	genome.wustl.edu	37	chr19	51986358	51986358	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cggctcccaagtggaaatggAgtgtatctgctattccttcc	10	11	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	51986358	51986358	A	G	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	missense	c.944	p.E315G	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	273	1	0.36	99	166	62.41	-	-	-	G	51986358	A	G	51986358	3	3	503	1	0	0	0	0	1	0	0	0	3218	304	11	5	962	5	CEACAM18	19	51986358	Missense_Mutation	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09	11609412	51986358	7142625	110	45908										
ZNF614	0	genome.wustl.edu	37	chr19	52521663	52521663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gttctccaccatcacatcccGgtacaggttcttctgagcag	8	14	4	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	52521663	52521663	G	A	SNP	ZNF614	ENST00000270649	human	ensembl	69_37n	-1	known	missense	c.100	p.R34W	0.053	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556	199	0	0	161	19	10.56	-	-	-	A	52521663	G	A	52521663	3	1	503	1	0	0	0	0	1	0	0	0	18135	1115	39	1	1669	1	ZNF614	19	52521663	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	535305	52521663	6607320	111	45909										
ZNF841	0	genome.wustl.edu	37	chr19	52569672	52569672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tgaagaccttgccacattcaTtacatttgtagggtttctct	7	9	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	52569672	52569672	T	C	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.1463	p.N488S	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	122	0	0	212	24	10.17	-	-	-	C	52569672	T	C	52569672	3	2	503	1	0	0	0	0	1	0	0	0	18282	1493	52	5	1315	5	ZNF841	19	52569672	Missense_Mutation	SNP	T	TCGA-BH-A0BP-01A-11D-A10Y-09	48009	52569672	6559311	112	45910										
CCDC106	0	genome.wustl.edu	37	chr19	56164049	56164049	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctggacgacgagacgctcaaGaaggtgcaggcgctcaagaa	14	10	2	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	56164049	56164049	G	C	SNP	CCDC106	ENST00000308964	human	ensembl	69_37n	1	known	missense	c.780	p.K260N	1.000	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581	46	0	0	45	11	19.64	-	-	-	C	56164049	G	C	56164049	3	2	503	1	0	0	0	0	1	0	0	0	2766	933	33	2	798	2	CCDC106	19	56164049	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	3594377	56164049	2964934	113	45911										
ZNF835	0	genome.wustl.edu	37	chr19	57175732	57175732	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cttggcgcactggccgcagcGgtagggcttctcctccgtgt	14	14	1	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	57175732	57175732	G	C	SNP	ZNF835	ENST00000537055	human	ensembl	69_37n	-1	known	missense	c.835	p.R279G	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	140	0	0	94	12	11.32	-	-	-	C	57175732	G	C	57175732	3	2	503	1	0	0	0	0	1	0	0	0	18279	1116	39	3	780	3	ZNF835	19	57175732	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	1011683	57175732	1953251	114	45912										
ZNF418	0	genome.wustl.edu	37	chr19	58439287	58439287	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	aatgtctcccaagatcgcgcCacacatttcacaagagtggg	9	12	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	19	58439287	58439287	C	G	SNP	ZNF418	ENST00000425570	human	ensembl	69_37n	-1	known	missense	c.325	p.G109R	0.001	smart_Znf_C2H2-like,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	171	0	0	188	27	12.56	-	-	-	G	58439287	C	G	58439287	3	3	503	1	0	0	0	0	1	0	0	0	17991	594	21	4	1772	4	ZNF418	19	58439287	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	1263555	58439287	689696	115	45913										
TGM6	0	genome.wustl.edu	37	chr20	2380303	2380303	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	actggcgcggcagcgtggccAttctgcagaagtggctcaag	15	11	2	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	20	2380303	2380303	A	T	SNP	TGM6	ENST00000202625	human	ensembl	69_37n	1	known	missense	c.769	p.I257F	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948	77	0	0	41	6	12.77	-	-	-	T	2380303	A	T	2380303	3	4	503	1	0	0	0	0	1	0	0	0	15929	217	8	5	791	5	TGM6	20	2380303	Missense_Mutation	SNP	A	TCGA-BH-A0BP-01A-11D-A10Y-09		2380303	60645217	116	45914										
CD93	0	genome.wustl.edu	37	chr20	23065739	23065739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cccagcattcgcagcggaagCccccaggggtgttgacacac	12	15	0	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	20	23065739	23065739	C	A	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	missense	c.1091	p.G364V	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_CD93/CD141,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	79	0	0	43	24	35.82	-	-	-	A	23065739	C	A	23065739	3	1	503	1	0	0	0	0	1	0	0	0	3076	739	26	4	875	4	CD93	20	23065739	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	20685436	23065739	39959781	117	45915										
PPP1R16B	0	genome.wustl.edu	37	chr20	37529305	37529305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	gaacccaccctggatgtcatCgagacctgcatggcatacca	9	14	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	20	37529305	37529305	C	T	SNP	PPP1R16B	ENST00000438192	human	ensembl	69_37n	1	novel	missense	c.377	p.S126L	0.978	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP1R16B	HGNC	ENSG00000101445	267	0	0	75	40	34.78	-	-	-	T	37529305	C	T	37529305	3	4	503	1	0	0	0	0	1	0	0	0	12443	874	31	1	563	1	PPP1R16B	20	37529305	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	14463566	37529305	25496215	118	45916										
DBNDD2	0	genome.wustl.edu	37	chr20	44037247	44037248	+	Splice_Site	INS	-	-	T													0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	catctcgagtcgcagagacgINStaagtcccaagtcctgagaa							TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	20	44037247	44037248	-	T	INS	DBNDD2	ENST00000372720	human	ensembl	69_37n	1	known	splice_site_ins	c.433+1_433+1	e2+1	1.000:1.000	-	-	-	no_errors	DBNDD2	HGNC	ENSG00000244274	122	0	0	78	24	23.53	-	-	-	T	44037248	-	T	44037247	8	5	503	1	0	1	1	0	0	0	1	0	4286	1159	40	0	142	0	DBNDD2	20	44037247	Splice_Site	INS	-	TCGA-BH-A0BP-01A-11D-A10Y-09	6507942	44037247	18988273	119	45917										
SFI1	0	genome.wustl.edu	37	chr22	32009792	32009792	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ggccacaggcttctcggcctCtgggagctctgggccgcctg	15	15	3	0			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	22	32009792	32009792	C	T	SNP	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	silent	c.2947	p.L983	0.000	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	41	0	0	12	4	25	-	-	-	T	32009792	C	T	32009792	2	4	503	1	0	0	0	0	0	0	0	1	14244	912	32	2		2	SFI1	22	32009792	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09		32009792	19294774	120	45918										
APOBEC3B	0	genome.wustl.edu	37	chr22	39382037	39382037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ctactgggaaagagattaccGaagggcgctctgcaggctga	14	9	1	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	22	39382037	39382037	G	A	SNP	APOBEC3B	ENST00000333467	human	ensembl	69_37n	1	known	missense	c.395	p.R132Q	0.000	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750	277	0	0	149	36	19.46	-	-	-	A	39382037	G	A	39382037	3	1	503	1	0	0	0	0	1	0	0	0	792	1058	37	1	405	1	APOBEC3B	22	39382037	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	7372245	39382037	11922529	121	45919										
ZFX	0	genome.wustl.edu	37	chrX	24228434	24228434	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	catcccgaacaccttgccaaGaagaaataccgctgtactga	7	13	0	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	X	24228434	24228434	G	A	SNP	ZFX	ENST00000540034	human	ensembl	69_37n	1	known	silent	c.1476	p.K492	1.000	pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	334	0	0	238	34	12.5	-	-	-	A	24228434	G	A	24228434	2	1	503	1	0	0	0	0	0	0	0	1	17757	933	33	2		2	ZFX	23	24228434	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09		24228434	131042126	122	45920										
ZNF182	0	genome.wustl.edu	37	chrX	47836619	47836619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccacattcaggacactcaaaGggtctctctcctgtatgagt	8	12	4	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	X	47836619	47836619	G	A	SNP	ZNF182	ENST00000305127	human	ensembl	69_37n	-1	known	silent	c.867	p.P289	0.368	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118	160	0	0	93	36	27.91	-	-	-	A	47836619	G	A	47836619	2	1	503	1	0	0	0	0	0	0	0	1	17846	987	35	4		4	ZNF182	23	47836619	Silent	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	23608185	47836619	107433941	123	45921										
WAS	0	genome.wustl.edu	37	chrX	48546700	48546700	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	cctgggcaggtgaacaacctCgacccagatctgcggagtct	12	13	2	2			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	X	48546700	48546700	C	T	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	silent	c.789	p.L263	0.832	pfam_PAK_box_Rho-bd,superfamily_WASP_C,smart_PAK_box_Rho-bd	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	113	0	0	45	15	25	-	-	-	T	48546700	C	T	48546700	2	4	503	1	0	0	0	0	0	0	0	1	17348	871	31	1		1	WAS	23	48546700	Silent	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	710081	48546700	106723860	124	45922										
ATP11C	0	genome.wustl.edu	37	chrX	138886719	138886719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	tagaagaataagatcacaggGaaaggtttcatctgcctgta	10	6	3	3			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	X	138886719	138886719	G	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.475	p.P159S	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	265	0	0	103	32	23.7	-	-	-	A	138886719	G	A	138886719	3	1	503	1	0	0	0	0	1	0	0	0	1125	1174	41	2	3086	2	ATP11C	23	138886719	Missense_Mutation	SNP	G	TCGA-BH-A0BP-01A-11D-A10Y-09	90340019	138886719	16383841	125	45923										
SLITRK4	0	genome.wustl.edu	37	chrX	142718314	142718314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.19047619047619	24	0.00116861674559138	2.19259259259259	3.50526315789474	1.79032258064516	0.182057327024131	0.738198193588003	13	ccagttgcaattcaacgacaCggccaatgtgttccagaacc	8	13	1	1			TCGA-BH-A0BP-01A-11D-A10Y-09	TCGA-BH-A0BP-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51405cf1-e844-4316-be17-85e8ad1de4a3	f1b6fe69-8f67-4fc8-8650-664ab02d7cfb	X	142718314	142718314	C	A	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.611	p.R204L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	160	0	0	52	17	24.29	-	-	-	A	142718314	C	A	142718314	3	1	503	1	0	0	0	0	1	0	0	0	14834	536	19	3	1906	3	SLITRK4	23	142718314	Missense_Mutation	SNP	C	TCGA-BH-A0BP-01A-11D-A10Y-09	3831595	142718314	12552246	126	45924										
SLC45A1	0	genome.wustl.edu	37	chr1	8390663	8390663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ttcgcctcatcctttggcacGgccaacatagacagcgtcct	8	15	1	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	8390663	8390663	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	1	known	silent	c.1212	p.T404	0.941	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	28	0	0	45	7	13.46	-	-	-	A	8390663	G	A	8390663	2	1	504	1	0	0	0	0	0	0	0	1	14729	1103	39	1		1	SLC45A1	1	8390663	Silent	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09		8390663	240859958	1	45925										
VPS13D	0	genome.wustl.edu	37	chr1	12405462	12405462	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	acctccggattcatcaactgCaagtgagagtaaatggctgg	11	9	2	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	12405462	12405462	C	A	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	nonsense	c.5382	p.C1794*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	224	0	0	192	46	19.33	-	-	-	A	12405462	C	A	12405462	4	1	504	1	0	0	0	0	0	1	0	0	17289	711	25	4	9083	4	VPS13D	1	12405462	Nonsense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	4014799	12405462	236845159	2	45926										
NTNG1	0	genome.wustl.edu	37	chr1	107691296	107691296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	cagccctaccctttggtttgGggacattatgatttgtgtaa	10	8	0	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	107691296	107691296	G	T	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	1	known	missense	c.81	p.W27C	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	279	0	0	254	58	18.59	-	-	-	T	107691296	G	T	107691296	3	4	504	1	0	0	0	0	1	0	0	0	10777	1241	43	4	83	4	NTNG1	1	107691296	Missense_Mutation	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09	95285834	107691296	141559325	3	45927										
CR2	0	genome.wustl.edu	37	chr1	207644142	207644142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ggaagatagacacatggtccGctttgaccctggaacatcta	10	10	1	3			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	207644142	207644142	G	C	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	missense	c.1283	p.R428P	0.142	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	182	0	0	205	24	10.43	-	-	-	C	207644142	G	C	207644142	3	2	504	1	0	0	0	0	1	0	0	0	3872	1087	38	3	1309	3	CR2	1	207644142	Missense_Mutation	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09	99952846	207644142	41606479	4	45928										
SUSD4	0	genome.wustl.edu	37	chr1	223400952	223400952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	tgacctggggggaaagtgggCcttgaacttggtctggaaca	16	7	1	2			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	223400952	223400952	C	T	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.1045	p.A349T	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	93	0	0	120	16	11.51	-	-	-	T	223400952	C	T	223400952	3	4	504	1	0	0	0	0	1	0	0	0	15501	739	26	4	439	4	SUSD4	1	223400952	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	15756810	223400952	25849669	5	45929										
IFT172	0	genome.wustl.edu	37	chr2	27667302	27667302	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ttcctcagctctaccaactaCtgaaaggaaaagctggtgct	8	11	2	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	27667302	27667302	C	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.5247	p.Q1749H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	70	0	0	49	9	15.52	-	-	-	A	27667302	C	A	27667302	3	1	504	1	0	0	0	0	1	0	0	0	7611	564	20	4	6	4	IFT172	2	27667302	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09		27667302	215532071	6	45930										
DNAH1	0	genome.wustl.edu	37	chr3	52402833	52402833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	acaagaagtggtacatgttcGatgggccggtggatgccatc	14	8	0	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	3	52402833	52402833	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.5842	p.D1948N	1.000	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	79	0	0	65	19	22.62	-	-	-	A	52402833	G	A	52402833	3	1	504	1	0	0	0	0	1	0	0	0	4633	1058	37	1	5984	1	DNAH1	3	52402833	Missense_Mutation	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09		52402833	145619597	7	45931										
ALCAM	0	genome.wustl.edu	37	chr3	105253613	105253613	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	gctgacatacaaatgccattCacctgctcggtgacatatta	7	11	1	2			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	3	105253613	105253613	C	T	SNP	ALCAM	ENST00000465413	human	ensembl	69_37n	1	novel	missense	c.196	p.H66Y	0.998	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALCAM	HGNC	ENSG00000170017	138	0	0	123	19	13.38	-	-	-	T	105253613	C	T	105253613	3	4	504	1	0	0	0	0	1	0	0	0	487	825	29	2	676	2	ALCAM	3	105253613	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	52850780	105253613	92768817	8	45932										
BMPER	0	genome.wustl.edu	37	chr7	34125684	34125684	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	cagacctgccactcgactgtGgactacgccactttctaccg	8	16	1	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	7	34125684	34125684	G	A	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	silent	c.1725	p.V575	0.997	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	115	0	0	103	35	25.18	-	-	-	A	34125684	G	A	34125684	2	1	504	1	0	0	0	0	0	0	0	1	1473	1335	47	4		4	BMPER	7	34125684	Silent	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09		34125684	125012979	9	45933										
DSCAML1	0	genome.wustl.edu	37	chr11	117351189	117351189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ttgtattcaatgtcgaagccCgtgatgatgctgttcccgtc	10	10	1	2			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	117351189	117351189	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.2934	p.T978	0.738	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	89	0	0	80	19	19.19	-	-	-	T	117351189	C	T	117351189	2	4	504	1	0	0	0	0	0	0	0	1	4804	639	23	1		1	DSCAML1	11	117351189	Silent	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09		117351189	17655327	10	45934										
PKNOX2	0	genome.wustl.edu	37	chr11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	cccagctggaggctgacaagCgagctgtatacaggtaggag	15	9	0	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	125237868	125237868	C	T	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	1	known	nonsense	c.214	p.R72*	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	78	0	0	62	21	25.3	-	-	-	T	125237868	C	T	125237868	4	4	504	1	0	0	0	0	0	1	0	0	12057	760	27	1	220	1	PKNOX2	11	125237868	Nonsense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	7886679	125237868	9768648	11	45935										
GRIN2B	0	genome.wustl.edu	37	chr12	13716941	13716941	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	tgctgcttacgcctcttggcGgcattgccctcgatgttccc	10	15	1	0			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	12	13716941	13716941	G	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.3231	p.A1077	0.015	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	147	0	0	101	29	22.31	-	-	-	A	13716941	G	A	13716941	2	1	504	1	0	0	0	0	0	0	0	1	6831	1103	39	1		1	GRIN2B	12	13716941	Silent	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09		13716941	120134954	12	45936										
TCTN1	0	genome.wustl.edu	37	chr12	111064227	111064227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	tcattgaattttacagcaaaCccacctcaaagagtatttga	5	9	2	3			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	12	111064227	111064227	C	A	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	1	known	missense	c.402	p.N134K	0.967	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	230	0	0	94	16	14.55	-	-	-	A	111064227	C	A	111064227	3	1	504	1	0	0	0	0	1	0	0	0	15817	506	18	4	512	4	TCTN1	12	111064227	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	97347286	111064227	22787668	13	45937										
ZFHX3	0	genome.wustl.edu	37	chr16	72923665	72923665	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ggcacctgcggatggtgaagAtctgccccaggtcctcgtcc	13	14	1	2			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	16	72923665	72923665	A	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.3413	p.I1138N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	93	0	0	44	11	20	-	-	-	T	72923665	A	T	72923665	3	4	504	1	0	0	0	0	1	0	0	0	17730	333	12	5	7726	5	ZFHX3	16	72923665	Missense_Mutation	SNP	A	TCGA-BH-A0BQ-01A-21D-A10Y-09		72923665	17431088	14	45938										
DSG3	0	genome.wustl.edu	37	chr18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	agtattcagcacgtattgaaGaaaatattttaagttctgaa	7	4	2	3			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	29041208	29041208	G	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	nonsense	c.832	p.E278*	0.950	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	137	0	0	74	15	16.85	-	-	-	T	29041208	G	T	29041208	4	4	504	1	0	0	0	0	0	1	0	0	4813	943	33	2	862	2	DSG3	18	29041208	Nonsense_Mutation	SNP	G	TCGA-BH-A0BQ-01A-21D-A10Y-09		29041208	49036040	15	45939										
VPS4B	0	genome.wustl.edu	37	chr18	61067316	61067316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ggaactccgtcttaattctaCgtgcggcttcactttcattt	7	11	4	0			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	61067316	61067316	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.755	p.R252H	0.980	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	139	0	0	67	14	17.28	-	-	-	T	61067316	C	T	61067316	3	4	504	1	0	0	0	0	1	0	0	0	17310	536	19	1	599	1	VPS4B	18	61067316	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	32026108	61067316	17009932	16	45940										
FBN3	0	genome.wustl.edu	37	chr19	8201277	8201277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ctggccgcggctcaccaatgCactcgccgcgcacgtcctgg	12	18	1	0			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	8201277	8201277	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.1340	p.C447Y	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	43	0	0	46	7	13.21	-	-	-	T	8201277	C	T	8201277	3	4	504	1	0	0	0	0	1	0	0	0	5750	710	25	4	7305	4	FBN3	19	8201277	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09		8201277	50927706	17	45941										
HSPBP1	0	genome.wustl.edu	37	chr19	55790902	55790902	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	gaggagccgccgccgccgccCcctgaagagcaaccctggga	14	17	0	2			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	55790902	55790902	C	G	SNP	HSPBP1	ENST00000255631	human	ensembl	69_37n	-1	known	silent	c.75	p.G25	0.327	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265	10	0	0	5	4	44.44	-	-	-	G	55790902	C	G	55790902	2	3	504	1	0	0	0	0	0	0	0	1	7480	610	22	4		4	HSPBP1	19	55790902	Silent	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	47589625	55790902	3338081	18	45942										
SLC27A5	0	genome.wustl.edu	37	chr19	59010502	59010502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ctccgcacctggcacgcacaCgccatacacgttaacctgtt	7	17	0	0			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	59010502	59010502	C	T	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	missense	c.1753	p.V585M	0.988	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	57	0	0	35	11	23.91	-	-	-	T	59010502	C	T	59010502	3	4	504	1	0	0	0	0	1	0	0	0	14618	536	19	1	331	1	SLC27A5	19	59010502	Missense_Mutation	SNP	C	TCGA-BH-A0BQ-01A-21D-A10Y-09	3219600	59010502	118481	19	45943										
ZMYND8	0	genome.wustl.edu	37	chr20	45867613	45867613	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.993476777398216	0.663076923076923	0	0.783636363636364	1	1	0	ctgcatcttctgcatgtgccActtttgggaggacgtttgaa	11	9	2	1			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	20	45867613	45867613	A	C	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.2575	p.W859G	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	19	0	0	15	5	25	-	-	-	C	45867613	A	C	45867613	3	2	504	1	0	0	0	0	1	0	0	0	17807	174	6	5		5	ZMYND8	20	45867613	Missense_Mutation	SNP	A	TCGA-BH-A0BQ-01A-21D-A10Y-09		45867613	17157907	20	45944										
LIN28A	0	genome.wustl.edu	37	chr1	26737895	26737895	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aggtggctgcgccaaggcggCagaagaggcgcccgaggagg	20	10	0	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	26737895	26737895	C	A	SNP	LIN28A	ENST00000254231	human	ensembl	69_37n	1	known	missense	c.50	p.A17E	1.000	NULL	pfam_CSP_DNA-bd,pfam_Znf_CCHC,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,pfscan_Znf_CCHC,prints_CSP_DNA-bd	-	no_errors	LIN28A	HGNC	ENSG00000131914	12	0	0	12	5	29.41	-	-	-	A	26737895	C	A	26737895	3	1	505	1	0	0	0	0	1	0	0	0	8861	710	25	4	56	4	LIN28A	1	26737895	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		26737895	222512726	1	45945										
KIAA1522	0	genome.wustl.edu	37	chr1	33236015	33236015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cagccgccacccatcctcctCcagtgacacctggagccact	7	20	0	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	33236015	33236015	C	G	SNP	KIAA1522	ENST00000401073	human	ensembl	69_37n	1	known	missense	c.1235	p.S412C	1.000	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522	23	0	0	60	12	16.67	-	-	-	G	33236015	C	G	33236015	3	3	505	1	0	0	0	0	1	0	0	0	8290	855	30	2	1257	2	KIAA1522	1	33236015	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	6498120	33236015	216014606	2	45946										
ZNF362	0	genome.wustl.edu	37	chr1	33745932	33745933	+	Frame_Shift_Ins	INS	-	-	C													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cagggccacggcctgcttggINScccccccaagtccgaacgcg							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	33745932	33745933	-	C	INS	ZNF362	ENST00000373428	human	ensembl	69_37n	1	known	frame_shift_ins	c.557_558	p.K189fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	32	0	0	34	5	12.82	-	-	-	C	33745933	-	C	33745932	7	5	505	1	0	1	1	0	0	0	0	0	17964	1203	42	0	571	0	ZNF362	1	33745932	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09	509917	33745932	215504689	3	45947										
KPRP	0	genome.wustl.edu	37	chr1	152733184	152733184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gccctgagctgaggccacacGtagagccacgtccactccca	10	17	0	3			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	152733184	152733184	G	A	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	missense	c.1120	p.V374I	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	54	0	0	218	81	27.09	-	-	-	A	152733184	G	A	152733184	3	1	505	1	0	0	0	0	1	0	0	0	8489	1145	40	1	1122	1	KPRP	1	152733184	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	118987252	152733184	96517437	4	45948										
SERPINC1	0	genome.wustl.edu	37	chr1	173883952	173883952	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cggtaaatgcacatgggattCatgggaatgtcccgcggctt	13	9	1	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	173883952	173883952	C	T	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.147	p.M49I	1.000	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	71	0	0	124	41	24.85	-	-	-	T	173883952	C	T	173883952	3	4	505	1	0	0	0	0	1	0	0	0	14197	826	29	2	1271	2	SERPINC1	1	173883952	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	21150768	173883952	75366669	5	45949										
SLC35F3	0	genome.wustl.edu	37	chr1	234454539	234454539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gcagtgctaagtttggagaaGccgccttatttttgtccatc	10	9	0	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	234454539	234454539	G	T	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	missense	c.997	p.A333S	1.000	pfam_DUF914_euk	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	211	0	0	497	130	20.73	-	-	-	T	234454539	G	T	234454539	3	4	505	1	0	0	0	0	1	0	0	0	14679	971	34	4	1019	4	SLC35F3	1	234454539	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	60570587	234454539	14796082	6	45950										
FMN2	0	genome.wustl.edu	37	chr1	240256070	240256070	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	agctccagctccagcaacagCagcagcagcagcagctccag	10	16	0	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	240256070	240256070	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	nonsense	c.661	p.Q221*	0.991	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	9	0	0	11	8	42.11	-	-	-	T	240256070	C	T	240256070	4	4	505	1	0	0	0	0	0	1	0	0	5996	711	25	4	663	4	FMN2	1	240256070	Nonsense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	5801531	240256070	8994551	7	45951										
ZNF238	0	genome.wustl.edu	37	chr1	244218261	244218261	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cccagcccccacatcctgcaGatccacctgagcacgcactt	6	20	0	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	1	244218261	244218261	G	A	SNP	ZNF238	ENST00000358704	human	ensembl	69_37n	1	known	silent	c.1185	p.Q395	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF238	HGNC	ENSG00000179456	34	0	0	67	24	26.37	-	-	-	A	244218261	G	A	244218261	2	1	505	1	0	0	0	0	0	0	0	1	17886	933	33	2		2	ZNF238	1	244218261	Silent	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	3962191	244218261	5032360	8	45952										
RASGRP3	0	genome.wustl.edu	37	chr2	33749576	33749576	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	catagttccatttcacgcctCaaagagacccattctcatct	4	14	4	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	2	33749576	33749576	C	G	SNP	RASGRP3	ENST00000402538	human	ensembl	69_37n	1	known	silent	c.768	p.L256	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	140	0	0	184	56	23.33	-	-	-	G	33749576	C	G	33749576	2	3	505	1	0	0	0	0	0	0	0	1	13159	813	29	2		2	RASGRP3	2	33749576	Silent	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		33749576	209449797	9	45953										
XIRP2	0	genome.wustl.edu	37	chr2	168099578	168099578	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ttctcaaaaagatctgaactCagaaagagaatacttggaat	7	6	3	4			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	2	168099578	168099578	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.1676	p.S559L	0.996	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	39	0	0	45	10	18.18	-	-	-	T	168099578	C	T	168099578	3	4	505	1	0	0	0	0	1	0	0	0	17527	838	29	2	1706	2	XIRP2	2	168099578	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	134350002	168099578	75099795	10	45954										
SPHKAP	0	genome.wustl.edu	37	chr2	228884721	228884721	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aggttttctggagatcgttcTgttttaatcaatggtgtggg	13	4	3	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	2	228884721	228884721	T	C	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	silent	c.849	p.T283	0.001	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	238	0	0	235	86	26.79	-	-	-	C	228884721	T	C	228884721	2	2	505	1	0	0	0	0	0	0	0	1	15139	1567	55	5		5	SPHKAP	2	228884721	Silent	SNP	T	TCGA-BH-A0BR-01A-21W-A12T-09	60785143	228884721	14314652	11	45955										
CAND2	0	genome.wustl.edu	37	chr3	12845079	12845080	+	Frame_Shift_Ins	INS	-	-	G													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aaggtggtgaagatgctgctINSccggctcctggaggacaaga							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	3	12845079	12845080	-	G	INS	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	frame_shift_ins	c.161_162	p.R55fs	0.997:0.545	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	59	0	0	13	6	31.58	-	-	-	G	12845080	-	G	12845079	7	5	505	1	0	1	1	0	0	0	0	0	2641	1551	54	0	167	0	CAND2	3	12845079	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09		12845079	185177351	12	45956										
SGOL1	0	genome.wustl.edu	37	chr3	20216373	20216373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cgaattcaaaagacttccctGccaaatgactggtttcaaaa	6	10	2	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	3	20216373	20216373	G	A	SNP	SGOL1	ENST00000263753	human	ensembl	69_37n	-1	known	missense	c.650	p.A217V	0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810	189	0	0	144	67	31.75	-	-	-	A	20216373	G	A	20216373	3	1	505	1	0	0	0	0	1	0	0	0	14304	1319	46	4	1071	4	SGOL1	3	20216373	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	7371294	20216373	177806057	13	45957										
HRG	0	genome.wustl.edu	37	chr3	186395388	186395388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gtcactgttgccatggccacGgcccaccacctgggcactta	10	16	1	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	3	186395388	186395388	G	A	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	missense	c.1294	p.G432S	0.110	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	81	0	0	591	109	15.57	-	-	-	A	186395388	G	A	186395388	3	1	505	1	0	0	0	0	1	0	0	0	7405	1116	39	1	1320	1	HRG	3	186395388	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	166179015	186395388	11627042	14	45958										
C4orf40	0	genome.wustl.edu	37	chr4	71024261	71024261	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gtggttttcccttagctactCagttgaatgttcctcctctc	7	12	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	4	71024261	71024261	C	T	SNP	C4orf40	ENST00000344526	human	ensembl	69_37n	1	known	nonsense	c.292	p.Q98*	0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	285	0	0	363	202	35.75	-	-	-	T	71024261	C	T	71024261	4	4	505	1	0	0	0	0	0	1	0	0	2290	827	29	2	302	2	C4orf40	4	71024261	Nonsense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		71024261	120130015	15	45959										
UCP1	0	genome.wustl.edu	37	chr4	141484632	141484632	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aatactgccactcctccagtCgttagaccagctaaaatctt	5	13	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	4	141484632	141484632	C	T	SNP	UCP1	ENST00000262999	human	ensembl	69_37n	-1	known	silent	c.366	p.T122	0.096	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP1	HGNC	ENSG00000109424	126	0	0	177	96	35.16	-	-	-	T	141484632	C	T	141484632	2	4	505	1	0	0	0	0	0	0	0	1	17027	871	31	1		1	UCP1	4	141484632	Silent	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	70460371	141484632	49669644	16	45960										
ANKRD55	0	genome.wustl.edu	37	chr5	55407411	55407411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tcttggcagttggtacccacGatgctatcaaaggtggtgat	12	8	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	5	55407411	55407411	G	A	SNP	ANKRD55	ENST00000505970	human	ensembl	69_37n	-1	putative	missense	c.398	p.S133L	0.945	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_stop_codon:bad_bp_length_for_coding_region	ANKRD55	HGNC	ENSG00000164512	198	0	0	338	88	20.56	-	-	-	A	55407411	G	A	55407411	3	1	505	1	0	0	0	0	1	0	0	0	680	1048	37	1	692	1	ANKRD55	5	55407411	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09		55407411	125507849	17	45961										
RNF14	0	genome.wustl.edu	37	chr5	141362978	141362978	+	Frame_Shift_Del	DEL	A	A	-													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cttacgaaatgaatacctgcAagcggatgaggctaataaaa							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	5	141362978	141362978	A	-	DEL	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	frame_shift_del	c.1097	p.A367fs	1.000	NULL	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	112	0	0	145	34	18.89	-	-	-	-	141362978	A	-	141362978	7	5	505	1	0	1	0	1	0	0	0	0	13529	130	5	0	1115	0	RNF14	5	141362978	Frame_Shift_Del	DEL	A	TCGA-BH-A0BR-01A-21W-A12T-09	85955567	141362978	39552282	18	45962										
FAM114A2	0	genome.wustl.edu	37	chr5	153372571	153372571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aggtttctggccctgcagctCatgtctgtgtgattcaatct	10	10	5	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	5	153372571	153372571	C	T	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.1483	p.E495K	0.441	NULL	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	201	0	0	450	146	24.5	-	-	-	T	153372571	C	T	153372571	3	4	505	1	0	0	0	0	1	0	0	0	5444	835	29	2	38	2	FAM114A2	5	153372571	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	12009593	153372571	27542689	19	45963										
HDAC2	0	genome.wustl.edu	37	chr6	114274557	114274557	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	accatgatgaatatctatatCaatatataagactctctgat	4	7	3	4			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	6	114274557	114274557	C	T	SNP	HDAC2	ENST00000398283	human	ensembl	69_37n	-1	known	missense	c.805	p.D269N	1.000	pfam_His_deacetylse_dom,prints_His_deacetylse	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591	147	0	0	162	33	16.92	-	-	-	T	114274557	C	T	114274557	3	4	505	1	0	0	0	0	1	0	0	0	7058	826	29	2	979	2	HDAC2	6	114274557	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		114274557	56840510	20	45964										
TRDN	0	genome.wustl.edu	37	chr6	123869608	123869608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gttctttgtacctttatcagTatcttcgtcaccatcatcat	4	11	6	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	6	123869608	123869608	T	C	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.382	p.T128A	0.882	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	129	0	0	124	127	50.6	-	-	-	C	123869608	T	C	123869608	3	2	505	1	0	0	0	0	1	0	0	0	16564	1638	57	5	1963	5	TRDN	6	123869608	Missense_Mutation	SNP	T	TCGA-BH-A0BR-01A-21W-A12T-09	9595051	123869608	47245459	21	45965										
ENPP1	0	genome.wustl.edu	37	chr6	132207790	132207790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gtaaagatacatctcagacgCctttgcactgtgaaaaccta	7	10	1	3			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	6	132207790	132207790	C	T	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.2533	p.P845S	0.986	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	115	0	0	276	70	20.23	-	-	-	T	132207790	C	T	132207790	3	4	505	1	0	0	0	0	1	0	0	0	5166	739	26	4	2627	4	ENPP1	6	132207790	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	8338182	132207790	38907277	22	45966										
POLD2	0	genome.wustl.edu	37	chr7	44161448	44161448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cttaccccagtgctgctgggCccggttctccaggaagggtc	13	14	1	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	7	44161448	44161448	C	A	SNP	POLD2	ENST00000406581	human	ensembl	69_37n	-1	known	missense	c.205	p.A69S	1.000	NULL	pfam_DNA_pol_alpha/epsilon_bsu	-	no_errors	POLD2	HGNC	ENSG00000106628	70	0	0	155	62	28.31	-	-	-	A	44161448	C	A	44161448	3	1	505	1	0	0	0	0	1	0	0	0	12265	739	26	4	1244	4	POLD2	7	44161448	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		44161448	114977215	23	45967										
SAMD9	0	genome.wustl.edu	37	chr7	92734890	92734890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gactaaaatccaacttgtaaCgatatggattactgaattca	6	7	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	7	92734890	92734890	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.521	p.R174H	0.666	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	172	0	0	343	94	21.51	-	-	-	T	92734890	C	T	92734890	3	4	505	1	0	0	0	0	1	0	0	0	13912	536	19	1	4252	1	SAMD9	7	92734890	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	48573442	92734890	66403773	24	45968										
ACTL6B	0	genome.wustl.edu	37	chr7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tctccttcttcttccagtttINSgggggggcaccctcccggac							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	43	0	0	28	4	12.5	-	-	-	G	100245131	-	G	100245130	7	5	505	1	0	1	1	0	0	0	0	0	199	1799	63	0	612	0	ACTL6B	7	100245130	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09	7510240	100245130	58893533	25	45969										
CTTNBP2	0	genome.wustl.edu	37	chr7	117420559	117420559	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	taatacattctttatttccaTttttacaggccaggtataga	5	7	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	7	117420559	117420559	T	C	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.2459	p.N820S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	278	0	0	354	57	13.87	-	-	-	C	117420559	T	C	117420559	3	2	505	1	0	0	0	0	1	0	0	0	4077	1493	52	5	2600	5	CTTNBP2	7	117420559	Missense_Mutation	SNP	T	TCGA-BH-A0BR-01A-21W-A12T-09	17175429	117420559	41718104	26	45970										
FAM83A	0	genome.wustl.edu	37	chr8	124195351	124195351	+	Frame_Shift_Del	DEL	G	G	-													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ccgtgtcccccagacaccctGggaggggcggaagcaggccc							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	8	124195351	124195351	G	-	DEL	FAM83A	ENST00000318462	human	ensembl	69_37n	1	known	frame_shift_del	c.255	p.G86fs	0.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689	18	0	0	17	3	14.29	-	-	-	-	124195351	G	-	124195351	7	5	505	1	0	1	0	1	0	0	0	0	5678	1335	47	0	257	0	FAM83A	8	124195351	Frame_Shift_Del	DEL	G	TCGA-BH-A0BR-01A-21W-A12T-09		124195351	22168671	27	45971										
PTPRD	0	genome.wustl.edu	37	chr9	8518366	8518366	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cagggttcccagagtcccacGtcagtgtgatgcttgtagct	12	11	1	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	9	8518366	8518366	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.1025	p.T342M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	80	0	0	47	29	38.16	-	-	-	A	8518366	G	A	8518366	3	1	505	1	0	0	0	0	1	0	0	0	12882	1145	40	1	4885	1	PTPRD	9	8518366	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09		8518366	132695065	28	45972										
GNE	0	genome.wustl.edu	37	chr9	36217505	36217505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gacgtctttgacaatgtggaTatagtgactggccaggactc	12	8	1	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	9	36217505	36217505	T	C	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.2119	p.I707V	0.996	NULL	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	91	0	0	231	91	28.26	-	-	-	C	36217505	T	C	36217505	3	2	505	1	0	0	0	0	1	0	0	0	6574	1406	49	5	146	5	GNE	9	36217505	Missense_Mutation	SNP	T	TCGA-BH-A0BR-01A-21W-A12T-09	27699139	36217505	104995926	29	45973										
SPTLC1	0	genome.wustl.edu	37	chr9	94817703	94817703	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ttaccaattctggaagaggaCaaatagttccagtattcata	7	7	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	9	94817703	94817703	C	A	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	missense	c.764	p.C255F	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	87	0	0	190	64	25.2	-	-	-	A	94817703	C	A	94817703	3	1	505	1	0	0	0	0	1	0	0	0	15214	478	17	4	689	4	SPTLC1	9	94817703	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	58600198	94817703	46395728	30	45974										
RNF20	0	genome.wustl.edu	37	chr9	104302598	104302598	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cacattgaaaaactggaacgAcgacaggccactgatgatgc	10	10	0	3			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	9	104302598	104302598	A	C	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	silent	c.243	p.R81	0.988	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	115	0	0	310	88	22.11	-	-	-	C	104302598	A	C	104302598	2	2	505	1	0	0	0	0	0	0	0	1	13559	262	10	5		5	RNF20	9	104302598	Silent	SNP	A	TCGA-BH-A0BR-01A-21W-A12T-09	9484895	104302598	36910833	31	45975										
PAX2	0	genome.wustl.edu	37	chr10	102509528	102509529	+	Frame_Shift_Ins	INS	-	-	G													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	acgggggtgtgaaccagctcINSgggggggtgtttgtgaacgg							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	10	102509528	102509529	-	G	INS	PAX2	ENST00000370296	human	ensembl	69_37n	1	known	frame_shift_ins	c.69_70	p.V25fs	1.000:1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891	22	0	0	14	2	12.5	-	-	-	G	102509529	-	G	102509528	7	5	505	1	0	1	1	0	0	0	0	0	11552	871	31	0	75	0	PAX2	10	102509528	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09		102509528	33025219	32	45976										
C10orf32	0	genome.wustl.edu	37	chr10	104614108	104614108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gtccgtgaaggggcttctcaCggagaaggtgaccacctgtg	15	10	1	3			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	10	104614108	104614108	C	T	SNP	C10orf32	ENST00000299353	human	ensembl	69_37n	1	known	missense	c.65	p.T22M	1.000	NULL	NULL	-	no_errors	C10orf32	HGNC	ENSG00000166275	27	0	0	47	15	24.19	-	-	-	T	104614108	C	T	104614108	3	4	505	1	0	0	0	0	1	0	0	0	1612	536	19	1	67	1	C10orf32	10	104614108	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	2104580	104614108	30920639	33	45977										
SORCS3	0	genome.wustl.edu	37	chr10	107007042	107007042	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	accacaatcctgacattcctGagtggagaaaagatattggc	9	9	0	4			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	10	107007042	107007042	G	C	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.3058	p.E1020Q	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	286	0	0	307	77	20.05	-	-	-	C	107007042	G	C	107007042	3	2	505	1	0	0	0	0	1	0	0	0	15021	1291	45	2	3144	2	SORCS3	10	107007042	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	2392934	107007042	28527705	34	45978										
TDRD1	0	genome.wustl.edu	37	chr10	115981122	115981122	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ttgtatgtttccagctacctCttcagctgagcaatggaaga	9	9	2	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	10	115981122	115981122	C	G	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	missense	c.2777	p.S926C	0.614	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	136	0	0	165	42	20.29	-	-	-	G	115981122	C	G	115981122	3	3	505	1	0	0	0	0	1	0	0	0	15825	913	32	2	2851	2	TDRD1	10	115981122	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	8974080	115981122	19553625	35	45979										
DUSP6	0	genome.wustl.edu	37	chr12	89745744	89745744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gttgcccagctccagctgctCgttgagccacgccaccgtct	10	17	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	12	89745744	89745744	C	T	SNP	DUSP6	ENST00000279488	human	ensembl	69_37n	-1	known	missense	c.73	p.E25K	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP6	HGNC	ENSG00000139318	9	0	0	7	4	36.36	-	-	-	T	89745744	C	T	89745744	3	4	505	1	0	0	0	0	1	0	0	0	4864	893	31	1	1084	1	DUSP6	12	89745744	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		89745744	44106151	36	45980										
EEA1	0	genome.wustl.edu	37	chr12	93205078	93205078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	aatttgaccttctagctcttCggttttctgttctaaagaga	7	8	4	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	12	93205078	93205078	C	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.2176	p.E726K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	63	0	0	87	35	28.69	-	-	-	T	93205078	C	T	93205078	3	4	505	1	0	0	0	0	1	0	0	0	4956	893	31	1	2111	1	EEA1	12	93205078	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	3459334	93205078	40646817	37	45981										
SART3	0	genome.wustl.edu	37	chr12	108954695	108954695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cccactcgtactccccggggGagctctccgcggaggaagcc	13	17	1	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	12	108954695	108954695	G	A	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.236	p.S79F	1.000	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	110	0	0	118	94	44.34	-	-	-	A	108954695	G	A	108954695	3	1	505	1	0	0	0	0	1	0	0	0	13934	1174	41	2	2731	2	SART3	12	108954695	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	15749617	108954695	24897200	38	45982										
TMEM132D	0	genome.wustl.edu	37	chr12	129566471	129566471	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tcccccagggccggccgcctCagccacaaactgcgtcagga	11	18	2	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	12	129566471	129566471	C	T	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.1756	p.E586K	0.976	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	23	0	0	38	15	28.3	-	-	-	T	129566471	C	T	129566471	3	4	505	1	0	0	0	0	1	0	0	0	16142	835	29	2	1555	2	TMEM132D	12	129566471	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	20611776	129566471	4285424	39	45983										
CTAGE5	0	genome.wustl.edu	37	chr14	39777695	39777695	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tgaacaagcatctttgcagtCagaaaacacacattttgaaa	6	8	2	3			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	14	39777695	39777695	C	T	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	missense	c.1112	p.S371L	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	62	0	0	121	19	13.57	-	-	-	T	39777695	C	T	39777695	3	4	505	1	0	0	0	0	1	0	0	0	4026	838	29	2	1178	2	CTAGE5	14	39777695	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		39777695	67571845	40	45984										
LTBP2	0	genome.wustl.edu	37	chr14	75017969	75017969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gggcctcctccaccccgcccCgcacctgggccacctggtgg	12	21	0	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	14	75017969	75017969	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.1484	p.R495Q	0.994	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	17	0	0	3	5	62.5	-	-	-	T	75017969	C	T	75017969	3	4	505	1	0	0	0	0	1	0	0	0	9140	652	23	1	4101	1	LTBP2	14	75017969	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	35240274	75017969	32331571	41	45985										
TSHR	0	genome.wustl.edu	37	chr14	81610007	81610007	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ctggaccggaagatccgcctCaggcacgcatgtgccatcat	11	14	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	14	81610007	81610007	C	T	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	silent	c.1605	p.L535	0.619	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	498	0	0	1235	466	27.4	-	-	-	T	81610007	C	T	81610007	2	4	505	1	0	0	0	0	0	0	0	1	16718	813	29	2		2	TSHR	14	81610007	Silent	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	6592038	81610007	25739533	42	45986										
PAK6	0	genome.wustl.edu	37	chr15	40557093	40557094	+	Frame_Shift_Ins	INS	-	-	C													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gaaggcaagtttgtgggcctINSccccccacaatggcagaaca							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	15	40557093	40557094	-	C	INS	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	frame_shift_ins	c.107_108	p.Q39fs	1.000:0.997	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	63	0	0	15	2	11.76	-	-	-	C	40557094	-	C	40557093	7	5	505	1	0	1	1	0	0	0	0	0	11477	1551	54	0	109	0	PAK6	15	40557093	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09		40557093	61974299	43	45987										
FAM174B	0	genome.wustl.edu	37	chr15	93198621	93198621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	cgatcacggctgccttgaggGtgggtaggtcgcggaggagg	20	8	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	15	93198621	93198621	G	A	SNP	FAM174B	ENST00000327355	human	ensembl	69_37n	-1	known	missense	c.269	p.T90I	1.000	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174B	HGNC	ENSG00000185442	16	0	0	10	6	37.5	-	-	-	A	93198621	G	A	93198621	3	1	505	1	0	0	0	0	1	0	0	0	5536	1261	44	4	222	4	FAM174B	15	93198621	Missense_Mutation	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	52641528	93198621	9332771	44	45988										
PRSS53	0	genome.wustl.edu	37	chr16	31098991	31098992	+	Frame_Shift_Ins	INS	-	-	G													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gtgttgccctcctgaggcttINSgggggggccggggccacgct							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	16	31098991	31098992	-	G	INS	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	frame_shift_ins	c.109_108	p.K36fs	0.015:0.001	superfamily_Pept_cys/ser_Trypsin-like,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	44	0	0	42	5	10.64	-	-	-	G	31098992	-	G	31098991	7	5	505	1	0	1	1	0	0	0	0	0	12712	1821	63	0	1588	0	PRSS53	16	31098991	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09		31098991	59255762	45	45989										
TP53	0	genome.wustl.edu	37	chr17	7577118	7577118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tctcccaggacaggcacaaaCacgcacctcaaagctgttcc	7	16	2	0			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	17	7577118	7577118	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.820	p.V274F	0.074	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	123	0	0	212	119	35.95	-	-	-	A	7577118	C	A	7577118	3	1	505	1	0	0	0	0	1	0	0	0	16477	478	17	4	466	4	TP53	17	7577118	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		7577118	73618092	46	45990										
WIPI1	0	genome.wustl.edu	37	chr17	66430737	66430737	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	ctcatagagcttttgcccatCagggacagagaacacccgga	10	12	2	2			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	17	66430737	66430737	C	T	SNP	WIPI1	ENST00000262139	human	ensembl	69_37n	-1	known	missense	c.652	p.D218N	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540	167	0	0	126	59	31.89	-	-	-	T	66430737	C	T	66430737	3	4	505	1	0	0	0	0	1	0	0	0	17467	826	29	2	716	2	WIPI1	17	66430737	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	58853619	66430737	14764473	47	45991										
EEF2	0	genome.wustl.edu	37	chr19	3982347	3982347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gaacttggccacatacatctCggcaaactgcttcagggtga	10	11	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	19	3982347	3982347	C	T	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	88	0	0	39	20	33.9	-	-	-	T	3982347	C	T	3982347	3	4	505	1	0	0	0	0	1	0	0	0	4964	893	31	1	1932	1	EEF2	19	3982347	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09		3982347	55146636	48	45992										
SLC23A2	0	genome.wustl.edu	37	chr20	4850568	4850569	+	Frame_Shift_Ins	INS	-	-	G													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tacctgtttattgcgtggatINSgggggggggtggggcacagg							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	20	4850568	4850569	-	G	INS	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1234_1233	p.I411fs	1.000:0.974	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	43	0	0	35	4	10.26	-	-	-	G	4850569	-	G	4850568	7	5	505	1	0	1	1	0	0	0	0	0	14552	1464	51	0	742	0	SLC23A2	20	4850568	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09		4850568	58174952	49	45993										
JAG1	0	genome.wustl.edu	37	chr20	10627609	10627609	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tcatggcagtatgttcccgtGaagcctttgttacagtcaca	9	10	2	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	20	10627609	10627609	G	A	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	silent	c.1863	p.F621	1.000	pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	116	0	0	70	49	41.18	-	-	-	A	10627609	G	A	10627609	2	1	505	1	0	0	0	0	0	0	0	1	7988	1281	45	2		2	JAG1	20	10627609	Silent	SNP	G	TCGA-BH-A0BR-01A-21W-A12T-09	5777041	10627609	52397911	50	45994										
RIN2	0	genome.wustl.edu	37	chr20	19955585	19955586	+	Frame_Shift_Ins	INS	-	-	C													0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	tggcacggagcggactcggtINScccccccacccaggcccccg							TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	20	19955585	19955586	-	C	INS	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	frame_shift_ins	c.1063_1064	p.P358fs	1.000:0.999	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	37	0	0	32	4	11.11	-	-	-	C	19955586	-	C	19955585	7	5	505	1	0	1	1	0	0	0	0	0	13458	1667	58	0	942	0	RIN2	20	19955585	Frame_Shift_Ins	INS	-	TCGA-BH-A0BR-01A-21W-A12T-09	9327976	19955585	43069935	51	45995										
CHD6	0	genome.wustl.edu	37	chr20	40179966	40179966	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	gcttctcttttttctgtattTtcattttcatctattgaagg	5	7	5	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	20	40179966	40179966	T	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.11	p.K4T	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	238	0	0	222	76	25.5	-	-	-	G	40179966	T	G	40179966	3	3	505	1	0	0	0	0	1	0	0	0	3358	1841	64	5	8280	5	CHD6	20	40179966	Missense_Mutation	SNP	T	TCGA-BH-A0BR-01A-21W-A12T-09	20224381	40179966	22845554	52	45996										
RBPJL	0	genome.wustl.edu	37	chr20	43942234	43942234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.264150943396226	14	0.000798003245043679	2.97964015151515	5.10795454545455	2.67559523809524	0.00702821275980517	0.110864388372411	9	acgacagtgggctgccttcaCgctccacctgggtaatgaca	11	13	1	1			TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df82226e-2242-418b-9f5f-0a5e531826a4	9a94cf94-c89a-4460-83de-0574acf85969	20	43942234	43942234	C	T	SNP	RBPJL	ENST00000343694	human	ensembl	69_37n	1	known	missense	c.746	p.T249M	0.984	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232	72	0	0	280	91	24.53	-	-	-	T	43942234	C	T	43942234	3	4	505	1	0	0	0	0	1	0	0	0	13245	536	19	1	772	1	RBPJL	20	43942234	Missense_Mutation	SNP	C	TCGA-BH-A0BR-01A-21W-A12T-09	3762268	43942234	19083286	53	45997										
CKAP2L	0	genome.wustl.edu	37	chr2	113509932	113509932	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	tcttttcttcctcttcttttTcaatgctcttccagaatgaa	3	11	6	2			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	2	113509932	113509932	T	G	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.1514	p.E505A	0.999	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	472	0	0	422	242	36.45	-	-	-	G	113509932	T	G	113509932	3	3	506	1	0	0	0	0	1	0	0	0	3473	1783	62	5	743	5	CKAP2L	2	113509932	Missense_Mutation	SNP	T	TCGA-BH-A0BS-01A-11D-A12Q-09		113509932	129689441	1	45998										
PDCD6IP	0	genome.wustl.edu	37	chr3	33896710	33896711	+	Frame_Shift_Del	DEL	AT	AT	-													0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	gttccagaacaaatgcagtgAtatagtttttgcacggaaga							TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	3	33896710	33896711	AT	-	DEL	PDCD6IP	ENST00000457054	human	ensembl	69_37n	1	known	frame_shift_del	c.2093_2094	p.I699fs	1.000:1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	318	0	0	373	149	28.01	-	-	-	-	33896711	AT	-	33896710	7	5	506	1	0	1	0	1	0	0	0	0	11697	333	12	0	2151	0	PDCD6IP	3	33896710	Frame_Shift_Del	DEL	AT	TCGA-BH-A0BS-01A-11D-A12Q-09		33896710	164125720	2	45999										
TFAP2A	0	genome.wustl.edu	37	chr6	10398931	10398931	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	caggtcggtgaactctttgcAtatctgtctgcagcacaagt	10	10	3	1			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	10398931	10398931	A	G	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.1033	p.C345R	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	73	0	0	75	39	34.21	-	-	-	G	10398931	A	G	10398931	3	3	506	1	0	0	0	0	1	0	0	0	15882	217	8	5	284	5	TFAP2A	6	10398931	Missense_Mutation	SNP	A	TCGA-BH-A0BS-01A-11D-A12Q-09		10398931	160716136	3	46000										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32634373	32634373	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	ccggggatccgcaaagccttCttccaagacataactgagac	9	13	1	2			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	32634373	32634373	C	T	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	silent	c.12	p.K4	0.001	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	32	0	0	49	10	16.95	-	-	-	T	32634373	C	T	32634373	2	4	506	1	0	0	0	0	0	0	0	1	7257	912	32	2		2	HLA-DQB1	6	32634373	Silent	SNP	C	TCGA-BH-A0BS-01A-11D-A12Q-09	22235442	32634373	138480694	4	46001										
RTN4IP1	0	genome.wustl.edu	37	chr6	107070840	107070840	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	tttaaagctgtagctccataAccacctgtaaaatacaattt	4	9	0	0			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	107070840	107070840	A	G	SNP	RTN4IP1	ENST00000369063	human	ensembl	69_37n	-1	known	silent	c.279	p.G93	0.634	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347	97	0	0	102	66	39.29	-	-	-	G	107070840	A	G	107070840	2	3	506	1	0	0	0	0	0	0	0	1	13815	30	2	5		5	RTN4IP1	6	107070840	Silent	SNP	A	TCGA-BH-A0BS-01A-11D-A12Q-09	74436467	107070840	64044227	5	46002										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	75	0	0	101	55	35.03	-	-	-	-	8111434	CA	-	8111433	8	5	506	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-BH-A0BS-01A-11D-A12Q-09		8111433	127423314	6	46003										
PPP1CC	0	genome.wustl.edu	37	chr12	111160057	111160057	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	tgcctctttgcaaaaaattcAtatccatcttcaaccacctt	2	13	4	0			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	12	111160057	111160057	A	G	SNP	PPP1CC	ENST00000340766	human	ensembl	69_37n	-1	known	silent	c.765	p.Y255	1.000	smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298	154	0	0	161	80	33.2	-	-	-	G	111160057	A	G	111160057	2	3	506	1	0	0	0	0	0	0	0	1	12428	224	8	5		5	PPP1CC	12	111160057	Silent	SNP	A	TCGA-BH-A0BS-01A-11D-A12Q-09		111160057	22691838	7	46004										
RNF6	0	genome.wustl.edu	37	chr13	26793710	26793710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	gctcttgctgccatcttctcTcattttcatgatgattatgg	7	10	5	2			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	13	26793710	26793710	T	C	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	missense	c.77	p.E26G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	304	0	0	302	191	38.74	-	-	-	C	26793710	T	C	26793710	3	2	506	1	0	0	0	0	1	0	0	0	13584	1551	54	5	1992	5	RNF6	13	26793710	Missense_Mutation	SNP	T	TCGA-BH-A0BS-01A-11D-A12Q-09		26793710	88376168	8	46005										
SERPINA5	0	genome.wustl.edu	37	chr14	95058404	95058404	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	tcccctgcagatggtgcacaAagctgtggtggaggtggacg	16	9	0	1			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	14	95058404	95058404	A	T	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	1	known	missense	c.1049	p.K350I	0.946	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	62	0	0	56	26	31.71	-	-	-	T	95058404	A	T	95058404	3	4	506	1	0	0	0	0	1	0	0	0	14180	14	1	5	1063	5	SERPINA5	14	95058404	Missense_Mutation	SNP	A	TCGA-BH-A0BS-01A-11D-A12Q-09		95058404	12291136	9	46006										
RAB5C	0	genome.wustl.edu	37	chr17	40280336	40280336	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	ttgttacccgcgagtgcaatGacgatgttggggctggcctg	15	9	0	1			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	17	40280336	40280336	G	A	SNP	RAB5C	ENST00000346213	human	ensembl	69_37n	-1	known	silent	c.384	p.V128	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774	108	0	0	77	50	39.37	-	-	-	A	40280336	G	A	40280336	2	1	506	1	0	0	0	0	0	0	0	1	13033	1277	45	2		2	RAB5C	17	40280336	Silent	SNP	G	TCGA-BH-A0BS-01A-11D-A12Q-09		40280336	40914874	10	46007										
FBXW9	0	genome.wustl.edu	37	chr19	12802058	12802058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	caggtaggagaggcacagcaCggctgagctggccctaggga	17	10	0	2			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	19	12802058	12802058	C	T	SNP	FBXW9	ENST00000380339	human	ensembl	69_37n	-1	known	missense	c.805	p.V269M	0.993	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004	62	0	0	51	41	43.62	-	-	-	T	12802058	C	T	12802058	3	4	506	1	0	0	0	0	1	0	0	0	5817	536	19	1	595	1	FBXW9	19	12802058	Missense_Mutation	SNP	C	TCGA-BH-A0BS-01A-11D-A12Q-09		12802058	46326925	11	46008										
TMEM27	0	genome.wustl.edu	37	chrX	15682471	15682471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	tccacttactgctttatctcCcagagctgttctgatactaa	5	12	2	2			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	15682471	15682471	C	T	SNP	TMEM27	ENST00000380342	human	ensembl	69_37n	-1	known	missense	c.106	p.G36R	1.000	NULL	NULL	-	no_errors	TMEM27	HGNC	ENSG00000147003	339	0	0	293	171	36.85	-	-	-	T	15682471	C	T	15682471	3	4	506	1	0	0	0	0	1	0	0	0	16247	632	22	4	582	4	TMEM27	23	15682471	Missense_Mutation	SNP	C	TCGA-BH-A0BS-01A-11D-A12Q-09		15682471	139588089	12	46009										
CD40LG	0	genome.wustl.edu	37	chrX	135732438	135732438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.590809797609151	1.95238095238095	NA	1.95238095238095	0.333333333333333	0.930327025915261	0	aaaatagatagaagatgaaaGgaatcttcatgaagattttg	9	2	2	6			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	135732438	135732438	G	A	SNP	CD40LG	ENST00000370629	human	ensembl	69_37n	1	known	missense	c.170	p.R57K	0.999	pirsf_TNF_ligand_5	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_ligand_5,pfscan_TNF,prints_TNF_ligand_5	-	no_errors	CD40LG	HGNC	ENSG00000102245	134	0	0	139	76	35.35	-	-	-	A	135732438	G	A	135732438	3	1	506	1	0	0	0	0	1	0	0	0	3045	1000	35	4	176	4	CD40LG	23	135732438	Missense_Mutation	SNP	G	TCGA-BH-A0BS-01A-11D-A12Q-09	120049967	135732438	19538122	13	46010										
PPP1R12B	0	genome.wustl.edu	37	chr1	202318211	202318211	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ccgacgaggtgagaaagcttCtggcaagaggtgctgatatc	14	8	1	3			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	202318211	202318211	C	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	silent	c.232	p.L78	0.965	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	19	0	0	11	7	38.89	-	-	-	T	202318211	C	T	202318211	2	4	507	1	0	0	0	0	0	0	0	1	12432	912	32	2		2	PPP1R12B	1	202318211	Silent	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09		202318211	46932410	1	46011										
SLC30A10	0	genome.wustl.edu	37	chr1	220089131	220089131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tggtcacattgtggattcccGcatggtggaagatttctcga	12	8	2	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	220089131	220089131	G	A	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.1118	p.A373V	0.048	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	104	1	0.94	75	43	36.44	-	-	-	A	220089131	G	A	220089131	3	1	507	1	0	0	0	0	1	0	0	0	14643	1087	38	1	343	1	SLC30A10	1	220089131	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09	17770920	220089131	29161490	2	46012										
RYR2	0	genome.wustl.edu	37	chr1	237656376	237656376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ttgcagacacgtcttgtgaaCcatgtcagcaggtaaattca	9	9	3	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	237656376	237656376	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1944	p.N648K	1.000	pfam_Ca-rel_channel,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	260	0	0	125	122	49.39	-	-	-	A	237656376	C	A	237656376	3	1	507	1	0	0	0	0	1	0	0	0	13855	506	18	4	2024	4	RYR2	1	237656376	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	17567245	237656376	11594245	3	46013										
SLC25A36	0	genome.wustl.edu	37	chr3	140695183	140695183	+	Missense_Mutation	SNP	A	A	G													0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	atctttgcttgttcaagaagAaggttatgggtctctttatc							TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	140695183	140695183	A	G	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	1	known	missense	c.824	p.E275G	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	450	0	0	295	213	41.85	-	-	-	G	140695183	A	G	140695183	3	3	507	1	0	0	0	0	1	0	0	0	14589	246	9	5	850	5	SLC25A36	3	140695183	Missense_Mutation	SNP	A	TCGA-BH-A0BT-01A-11D-A12Q-09		140695183	57327247	4	46014	379	2								
SLC25A36	0	genome.wustl.edu	37	chr3	140695184	140695184	+	Missense_Mutation	SNP	A	A	T													0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tctttgcttgttcaagaagaAggttatgggtctctttatcg							TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	140695184	140695184	A	T	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	1	known	missense	c.825	p.E275D	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	449	0	0	292	213	42.01	-	-	-	T	140695184	A	T	140695184	3	4	507	1	0	0	0	0	1	0	0	0	14589	69	3	5	851	5	SLC25A36	3	140695184	Missense_Mutation	SNP	A	TCGA-BH-A0BT-01A-11D-A12Q-09	1	140695184	57327246	5	46015	379	2								
PIK3CA	0	genome.wustl.edu	37	chr3	178922328	178922328	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tatctaccatggaggagaacCcttatgtgacaatgtgaaca	9	8	1	3			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	178922328	178922328	C	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1097	p.P366R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	375	0	0	317	199	38.57	-	-	-	G	178922328	C	G	178922328	3	3	507	1	0	0	0	0	1	0	0	0	11987	623	22	4	1115	4	PIK3CA	3	178922328	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	38227144	178922328	19100102	6	46016										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	232	0	0	124	86	40.95	-	-	-	G	178952085	A	G	178952085	3	3	507	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0BT-01A-11D-A12Q-09	29757	178952085	19070345	7	46017										
FTMT	0	genome.wustl.edu	37	chr5	121187842	121187842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	cccgggaccctaccgggcccGccgccggcccctctcgggtg	14	21	1	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	5	121187842	121187842	G	A	SNP	FTMT	ENST00000321339	human	ensembl	69_37n	1	known	missense	c.184	p.A62T	0.000	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	18	0	0	3	5	62.5	-	-	-	A	121187842	G	A	121187842	3	1	507	1	0	0	0	0	1	0	0	0	6134	1087	38	1	186	1	FTMT	5	121187842	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09		121187842	59727418	8	46018										
FAT2	0	genome.wustl.edu	37	chr5	150948446	150948446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ctagaggcttctcacaggtcGcacaatggagcaagaatatg	11	9	1	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	5	150948446	150948446	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.47	p.A16V	0.000	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	142	0	0	25	53	67.95	-	-	-	A	150948446	G	A	150948446	3	1	507	1	0	0	0	0	1	0	0	0	5736	1087	38	1	13094	1	FAT2	5	150948446	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09	29760604	150948446	29966814	9	46019										
NEDD9	0	genome.wustl.edu	37	chr6	11193886	11193886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ttggtatctggatgggtactCgtatacgtagccatggcctg	13	8	1	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	6	11193886	11193886	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.499	p.E167K	1.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	201	0	0	212	84	28.38	-	-	-	T	11193886	C	T	11193886	3	4	507	1	0	0	0	0	1	0	0	0	10385	893	31	1	2025	1	NEDD9	6	11193886	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09		11193886	159921181	10	46020										
AKD1	0	genome.wustl.edu	37	chr6	109820402	109820402	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tcccaggcgagaaagcagctCttgaggtgtgatacataact	11	9	1	3			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	6	109820402	109820402	C	G	SNP	AKD1	ENST00000490722	human	ensembl	69_37n	-1	novel	splice_site	c.93-1	e2-1	0.999	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AKD1	HGNC	ENSG00000155085	150	0	0	21	72	77.42	-	-	-	G	109820402	C	G	109820402	5	3	507	1	0	0	0	0	0	0	1	0	460	922	32	2	868	2	AKD1	6	109820402	Splice_Site	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	98626516	109820402	61294665	11	46021										
ZAN	0	genome.wustl.edu	37	chr7	100344246	100344249	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	cccgtgagcctgtcctctggCtgtctgagcttttccttcca							TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	7	100344246	100344249	CTGT	-	DEL	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	frame_shift_del	c.852_855	p.C285fs	0.998:1.000:1.000:0.988	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	156	0	0	79	28	25.93	-	-	-	-	100344249	CTGT	-	100344246	7	5	507	1	0	1	0	1	0	0	0	0	17610	784	28	0	878	0	ZAN	7	100344246	Frame_Shift_Del	DEL	CTGT	TCGA-BH-A0BT-01A-11D-A12Q-09		100344246	58794417	12	46022										
PLXNA4	0	genome.wustl.edu	37	chr7	131870086	131870086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gctccattctggctcaatccGcacgatggtggggtcttcca	11	13	3	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	7	131870086	131870086	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.3130	p.R1044W	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	183	0	0	78	50	39.06	-	-	-	A	131870086	G	A	131870086	3	1	507	1	0	0	0	0	1	0	0	0	12196	1086	38	1	2622	1	PLXNA4	7	131870086	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09	31525840	131870086	27268577	13	46023										
CYP17A1	0	genome.wustl.edu	37	chr10	104590523	104590523	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ccttgatcttcactttgaaaGagtcgatcagaaagaccacc	7	11	3	5			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	104590523	104590523	G	T	SNP	CYP17A1	ENST00000369887	human	ensembl	69_37n	-1	known	missense	c.1463	p.S488Y	0.892	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795	62	0	0	25	10	28.57	-	-	-	T	104590523	G	T	104590523	3	4	507	1	0	0	0	0	1	0	0	0	4178	942	33	2	67	2	CYP17A1	10	104590523	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09		104590523	30944224	14	46024										
FGFR2	0	genome.wustl.edu	37	chr10	123239386	123239386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gtcattcatgttttaacactGccgtttatgtgtggatactg	9	7	2	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	123239386	123239386	G	A	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	silent	c.2454	p.G818	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	461	0	0	160	157	49.53	-	-	-	A	123239386	G	A	123239386	2	1	507	1	0	0	0	0	0	0	0	1	5912	1306	46	4		4	FGFR2	10	123239386	Silent	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09	18648863	123239386	12295361	15	46025										
FAM175B	0	genome.wustl.edu	37	chr10	126523295	126523295	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gtgtctttatgcctcgacctCaagctgtgggctcttccaat	9	12	3	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	126523295	126523295	C	T	SNP	FAM175B	ENST00000298492	human	ensembl	69_37n	1	known	nonsense	c.1003	p.Q335*	1.000	NULL	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660	258	0	0	104	32	23.53	-	-	-	T	126523295	C	T	126523295	4	4	507	1	0	0	0	0	0	1	0	0	5538	827	29	2	1037	2	FAM175B	10	126523295	Nonsense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	3283909	126523295	9011452	16	46026										
ATHL1	0	genome.wustl.edu	37	chr11	289924	289924	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tacctgggcacacgagtgttTcacgacacgctgcacgtgag	12	12	1	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	289924	289924	T	A	SNP	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	missense	c.108	p.F36L	0.753	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	38	0	0	18	10	35.71	-	-	-	A	289924	T	A	289924	3	1	507	1	0	0	0	0	1	0	0	0	1108	1780	62	5	110	5	ATHL1	11	289924	Missense_Mutation	SNP	T	TCGA-BH-A0BT-01A-11D-A12Q-09		289924	134716592	17	46027										
TMEM80	0	genome.wustl.edu	37	chr11	700143	700143	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	atccttaaccactcaccagcTctcttcagttccccttcaaa	2	17	4	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	700143	700143	T	C	SNP	TMEM80	ENST00000397510	human	ensembl	69_37n	1	known	missense	c.116	p.L39P	1.000	NULL	pfam_Uncharacterised_TM-17	-	no_errors	TMEM80	HGNC	ENSG00000177042	184	0	0	84	54	39.13	-	-	-	C	700143	T	C	700143	3	2	507	1	0	0	0	0	1	0	0	0	16299	1565	54	5	126	5	TMEM80	11	700143	Missense_Mutation	SNP	T	TCGA-BH-A0BT-01A-11D-A12Q-09	410219	700143	134306373	18	46028										
SLC17A6	0	genome.wustl.edu	37	chr11	22360147	22360147	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	aaagaattttgctggaaaatCactcggccagatctacaggt	9	8	2	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	22360147	22360147	C	T	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	missense	c.68	p.S23L	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	174	0	0	183	58	24.07	-	-	-	T	22360147	C	T	22360147	3	4	507	1	0	0	0	0	1	0	0	0	14510	838	29	2	70	2	SLC17A6	11	22360147	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	21660004	22360147	112646369	19	46029										
ANKRD13D	0	genome.wustl.edu	37	chr11	67057824	67057824	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gcagtcagcactggagacccCgagatggtgcagctggtgct	15	11	1	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	67057824	67057824	C	T	SNP	ANKRD13D	ENST00000511455	human	ensembl	69_37n	1	known	silent	c.258	p.P86	0.001	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932	53	0	0	25	8	24.24	-	-	-	T	67057824	C	T	67057824	2	4	507	1	0	0	0	0	0	0	0	1	644	639	23	1		1	ANKRD13D	11	67057824	Silent	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	44697677	67057824	67948692	20	46030										
NAV3	0	genome.wustl.edu	37	chr12	78388624	78388624	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tcagtctaatcacagtggaaTtgcaaccagtcaaaaaaagc	7	9	4	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	12	78388624	78388624	T	C	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.713	p.I238T	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	551	0	0	315	200	38.83	-	-	-	C	78388624	T	C	78388624	3	2	507	1	0	0	0	0	1	0	0	0	10257	1493	52	5	735	5	NAV3	12	78388624	Missense_Mutation	SNP	T	TCGA-BH-A0BT-01A-11D-A12Q-09		78388624	55463271	21	46031										
SNX1	0	genome.wustl.edu	37	chr15	64428587	64428587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gaggatttcaacagtggtccGaaaagaagtgatacggtttg	13	5	1	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	64428587	64428587	G	A	SNP	SNX1	ENST00000559844	human	ensembl	69_37n	1	known	missense	c.1424	p.R475Q	1.000	pfam_Vps5_C	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX1	HGNC	ENSG00000028528	338	1	0.29	73	127	63.5	-	-	-	A	64428587	G	A	64428587	3	1	507	1	0	0	0	0	1	0	0	0	14969	1058	37	1	1474	1	SNX1	15	64428587	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09		64428587	38102805	22	46032										
C15orf39	0	genome.wustl.edu	37	chr15	75501096	75501096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tgctgaagttactggcgctgCgccagctgccggacatttac	12	12	0	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	75501096	75501096	C	T	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	missense	c.2707	p.R903C	1.000	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	25	0	0	2	5	71.43	-	-	-	T	75501096	C	T	75501096	3	4	507	1	0	0	0	0	1	0	0	0	1805	768	27	1	2709	1	C15orf39	15	75501096	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09	11072509	75501096	27030296	23	46033										
ABHD2	0	genome.wustl.edu	37	chr15	89698616	89698616	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	agatgatatcaccatggtcaTctgccctggaattgccaatc	8	11	3	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	89698616	89698616	T	A	SNP	ABHD2	ENST00000352732	human	ensembl	69_37n	1	known	missense	c.389	p.I130N	1.000	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526	210	0	0	32	62	65.96	-	-	-	A	89698616	T	A	89698616	3	1	507	1	0	0	0	0	1	0	0	0	82	1435	50	5	399	5	ABHD2	15	89698616	Missense_Mutation	SNP	T	TCGA-BH-A0BT-01A-11D-A12Q-09	14197520	89698616	12832776	24	46034										
TP53	0	genome.wustl.edu	37	chr17	7578458	7578458	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	cttgtagatggccatggcgcGgacgcgggtgccgggcgggg	21	10	0	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	17	7578458	7578458	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.472	p.R158G	0.981	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	72	0	0	12	63	82.89	-	-	-	C	7578458	G	C	7578458	3	2	507	1	0	0	0	0	1	0	0	0	16477	1116	39	3	826	3	TP53	17	7578458	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09		7578458	73616752	25	46035										
GPR142	0	genome.wustl.edu	37	chr17	72368642	72368642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	tgtccgacaggtcatccacgAtgcctacctgccctgcactt	8	16	1	0			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	17	72368642	72368642	A	G	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	missense	c.1292	p.D431G	0.059	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	25	0	0	5	7	58.33	-	-	-	G	72368642	A	G	72368642	3	3	507	1	0	0	0	0	1	0	0	0	6700	333	12	5	1306	5	GPR142	17	72368642	Missense_Mutation	SNP	A	TCGA-BH-A0BT-01A-11D-A12Q-09	64790184	72368642	8826568	26	46036										
SOCS6	0	genome.wustl.edu	37	chr18	67992682	67992682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ttcctcctcaagtgggagggCgcgctttccccgaggatgag	14	12	1	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	18	67992682	67992682	C	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.778	p.R260C	0.000	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	128	0	0	40	37	47.44	-	-	-	T	67992682	C	T	67992682	3	4	507	1	0	0	0	0	1	0	0	0	15007	768	27	1	780	1	SOCS6	18	67992682	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09		67992682	10084566	27	46037										
NDUFS7	0	genome.wustl.edu	37	chr19	1387829	1387829	+	Frame_Shift_Del	DEL	C	C	-													0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	gctcctggcctgcgcggcttCcggatccttggtctgcggtg							TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	19	1387829	1387829	C	-	DEL	NDUFS7	ENST00000233627	human	ensembl	69_37n	1	known	frame_shift_del	c.36	p.R13fs	0.000	NULL	pfam_NADH_UbQ_OxRdtase-like_20kDa,tigrfam_NADH_UQ_OxRdtase_20Kd_su	-	no_errors	NDUFS7	HGNC	ENSG00000115286	38	0	0	11	2	15.38	-	-	-	-	1387829	C	-	1387829	7	5	507	1	0	1	0	1	0	0	0	0	10369	854	30	0	42	0	NDUFS7	19	1387829	Frame_Shift_Del	DEL	C	TCGA-BH-A0BT-01A-11D-A12Q-09		1387829	57741154	28	46038										
PPEF1	0	genome.wustl.edu	37	chrX	18824537	18824537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ccaggtggtgactatattttCtgcttctaattattatgaag	8	6	2	2			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	18824537	18824537	C	T	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1268	p.S423F	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	217	0	0	202	79	28.11	-	-	-	T	18824537	C	T	18824537	3	4	507	1	0	0	0	0	1	0	0	0	12380	913	32	2	1314	2	PPEF1	23	18824537	Missense_Mutation	SNP	C	TCGA-BH-A0BT-01A-11D-A12Q-09		18824537	136446023	29	46039										
SHROOM4	0	genome.wustl.edu	37	chrX	50350796	50350796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	cttctgctgctgggctgcacGaaagagcctgtacttctccc	10	14	2	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	50350796	50350796	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.3346	p.R1116C	0.256	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	29	0	0	35	7	16.67	-	-	-	A	50350796	G	A	50350796	3	1	507	1	0	0	0	0	1	0	0	0	14385	1058	37	1	1151	1	SHROOM4	23	50350796	Missense_Mutation	SNP	G	TCGA-BH-A0BT-01A-11D-A12Q-09	31526259	50350796	104919764	30	46040										
NOX1	0	genome.wustl.edu	37	chrX	100103700	100103700	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	5	0.369610523384465	1.81992337164751	2.18390804597701	1.74712643678161	0.242424242424242	0.862148760330577	0	ttttctgtttcagacctgtcAcgatgtcagtggccttgtca	9	10	5	1			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	100103700	100103700	A	C	SNP	NOX1	ENST00000372966	human	ensembl	69_37n	-1	known	missense	c.1487	p.V496G	0.975	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952	398	1	0.25	208	147	41.29	-	-	-	C	100103700	A	C	100103700	3	2	507	1	0	0	0	0	1	0	0	0	10628	159	6	5	215	5	NOX1	23	100103700	Missense_Mutation	SNP	A	TCGA-BH-A0BT-01A-11D-A12Q-09	49752904	100103700	55166860	31	46041										
INTS7	0	genome.wustl.edu	37	chr1	212148582	212148582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	aagtgctgaactataattttCctcttgcaacccagtgagac	7	10	1	2			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	1	212148582	212148582	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.1741	p.E581K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	173	0	0	223	61	21.4	-	-	-	T	212148582	C	T	212148582	3	4	508	1	0	0	0	0	1	0	0	0	7837	864	30	2	1179	2	INTS7	1	212148582	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09		212148582	37102039	1	46042										
ABCB11	0	genome.wustl.edu	37	chr2	169869945	169869945	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	aatgagtagcacgcctggctGggctattccatggagaaatg	13	8	0	2			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	2	169869945	169869945	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.226	p.Q76*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	650	0	0	329	201	37.92	-	-	-	A	169869945	G	A	169869945	4	1	508	1	0	0	0	0	0	1	0	0	42	1357	47	4	3835	4	ABCB11	2	169869945	Nonsense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		169869945	73329428	2	46043										
SEC13	0	genome.wustl.edu	37	chr3	10354287	10354287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	ggagtcgtgtcccgcatgctCgtggctcttctcccaggtgc	13	14	2	0			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	10354287	10354287	C	T	SNP	SEC13	ENST00000350697	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020	85	0	0	40	20	33.33	-	-	-	T	10354287	C	T	10354287	3	4	508	1	0	0	0	0	1	0	0	0	14068	893	31	1	700	1	SEC13	3	10354287	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09		10354287	187668143	3	46044										
NKIRAS1	0	genome.wustl.edu	37	chr3	23934723	23934723	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	ccgatctgtaacagtcacctCccacagtcttactttctcac	4	16	4	0			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	23934723	23934723	C	G	SNP	NKIRAS1	ENST00000388759	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS1	HGNC	ENSG00000197885	421	0	0	249	124	33.24	-	-	-	G	23934723	C	G	23934723	3	3	508	1	0	0	0	0	1	0	0	0	10516	864	30	2	140	2	NKIRAS1	3	23934723	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09	13580436	23934723	174087707	4	46045										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	101	0	0	62	41	39.81	-	-	-	A	178936091	G	A	178936091	3	1	508	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09	155001368	178936091	19086339	5	46046										
ABCC5	0	genome.wustl.edu	37	chr3	183665211	183665211	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gtggtgatgagggcgatgctGatgaggtccagccgcacagc	17	9	0	4			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	183665211	183665211	G	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.3315	p.I1105M	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	34	0	0	21	6	18.75	-	-	-	C	183665211	G	C	183665211	3	2	508	1	0	0	0	0	1	0	0	0	56	1280	45	2	1030	2	ABCC5	3	183665211	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09	4729120	183665211	14357219	6	46047										
SNX25	0	genome.wustl.edu	37	chr4	186188284	186188284	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	agctcattaacagcaactctGatgtggagttcttgaagcaa	9	8	3	2			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	4	186188284	186188284	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	missense	c.574	p.D192N	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	264	0	0	126	32	20.25	-	-	-	A	186188284	G	A	186188284	3	1	508	1	0	0	0	0	1	0	0	0	14985	1290	45	2	588	2	SNX25	4	186188284	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		186188284	4965992	7	46048										
ARL10	0	genome.wustl.edu	37	chr5	175798850	175798850	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gcaggacccacctttgaagaGcctggcaccgtgcacatctg	11	14	1	2			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	5	175798850	175798850	G	A	SNP	ARL10	ENST00000310389	human	ensembl	69_37n	1	known	silent	c.687	p.E229	0.001	smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414	32	0	0	15	7	31.82	-	-	-	A	175798850	G	A	175798850	2	1	508	1	0	0	0	0	0	0	0	1	928	962	34	4		4	ARL10	5	175798850	Silent	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		175798850	5116410	8	46049										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123793	26123793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	ggtgacggccttggtgccctCcgacacggcgtgcttggcca	15	14	0	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	6	26123793	26123793	C	T	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	265	0	0	139	26	15.76	-	-	-	T	26123793	C	T	26123793	3	4	508	1	0	0	0	0	1	0	0	0	7193	864	30	2	44	2	HIST1H2BC	6	26123793	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09		26123793	144991274	9	46050										
ADCYAP1R1	0	genome.wustl.edu	37	chr7	31104525	31104525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	agatccagagggccaatgagCtgatgggcttcaatgattcc	12	9	1	5			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	7	31104525	31104525	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	1	known	silent	c.130	p.L44	0.843	pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	25	0	0	11	11	50	-	-	-	T	31104525	C	T	31104525	2	4	508	1	0	0	0	0	0	0	0	1	303	796	28	4		4	ADCYAP1R1	7	31104525	Silent	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09		31104525	128034138	10	46051										
SSPO	0	genome.wustl.edu	37	chr7	149481940	149481940	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	tgccaggaaaggggcctctgGaattgcacggctcgccactg	14	12	1	0			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	7	149481940	149481940	G	T	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	32	0	0	11	4	26.67	-	-	-	T	149481940	G	T	149481940	1	4	508	0	1	0	0	0	0	0	0	0	15280	1183	41	2		2	SSPO	7	149481940	RNA	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09	118377415	149481940	9656723	11	46052										
CSMD1	0	genome.wustl.edu	37	chr8	2975975	2975975	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gttgatcccatgctgacaagTgaggacaggatggcctatta	12	8	0	3			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	2975975	2975975	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6379	p.T2127A	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	122	0	0	35	31	46.97	-	-	-	C	2975975	T	C	2975975	3	2	508	1	0	0	0	0	1	0	0	0	3976	1696	59	5	4434	5	CSMD1	8	2975975	Missense_Mutation	SNP	T	TCGA-BH-A0BV-01A-11W-A019-09		2975975	143388047	12	46053										
RP1L1	0	genome.wustl.edu	37	chr8	10465798	10465798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	ctgcctcttgggcctctgcaCcttctgactctggctcgtcc	9	17	4	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	10465798	10465798	C	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.5810	p.G1937V	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	312	1	0.32	156	162	50.47	-	-	-	A	10465798	C	A	10465798	3	1	508	1	0	0	0	0	1	0	0	0	13619	507	18	4	1396	4	RP1L1	8	10465798	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09	7489823	10465798	135898224	13	46054										
ZFHX4	0	genome.wustl.edu	37	chr8	77766283	77766283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	aaacggatgcagctaaaaacGctgctgcccctgcagcaagt	10	12	0	0			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	77766283	77766283	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.7126	p.A2376T	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	390	0	0	204	98	32.45	-	-	-	A	77766283	G	A	77766283	3	1	508	1	0	0	0	0	1	0	0	0	17731	1087	38	1	7160	1	ZFHX4	8	77766283	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09	67300485	77766283	68597739	14	46055										
SH2D4B	0	genome.wustl.edu	37	chr10	82369254	82369254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gtttaaggaggagcagctgcCtcgccgagctggcttcgaga	15	10	0	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	10	82369254	82369254	C	T	SNP	SH2D4B	ENST00000470604	human	ensembl	69_37n	1	known	missense	c.929	p.P310L	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217	176	0	0	66	38	36.54	-	-	-	T	82369254	C	T	82369254	3	4	508	1	0	0	0	0	1	0	0	0	14324	681	24	4	998	4	SH2D4B	10	82369254	Missense_Mutation	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09		82369254	53165493	15	46056										
PSMD13	0	genome.wustl.edu	37	chr11	244466	244466	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	tttctggaaaagactcgtgaGaaggtaaatgtggcatgtgg	14	4	1	2			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	11	244466	244466	G	A	SNP	PSMD13	ENST00000526783	human	ensembl	69_37n	1	novel	missense	c.38	p.R13K	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMD13	HGNC	ENSG00000185627	162	0	0	83	16	16.16	-	-	-	A	244466	G	A	244466	3	1	508	1	0	0	0	0	1	0	0	0	12776	933	33	2	405	2	PSMD13	11	244466	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		244466	134762050	16	46057										
FOLH1	0	genome.wustl.edu	37	chr11	49175784	49175784	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	aggaagggtaacataccaaaTgatacactgtatgtcttcat	8	7	2	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	11	49175784	49175784	T	C	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.1884	p.S628	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	258	0	0	72	105	59.32	-	-	-	C	49175784	T	C	49175784	2	2	508	1	0	0	0	0	0	0	0	1	6025	1451	51	5		5	FOLH1	11	49175784	Silent	SNP	T	TCGA-BH-A0BV-01A-11W-A019-09	48931318	49175784	85830732	17	46058										
PPHLN1	0	genome.wustl.edu	37	chr12	42835228	42835228	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	tgaggcagaatttacatgaaAtaggtgagcggtgtgttgaa	14	3	0	5			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	12	42835228	42835228	A	C	SNP	PPHLN1	ENST00000395568	human	ensembl	69_37n	1	known	missense	c.1021	p.I341L	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	141	0	0	115	57	32.95	-	-	-	C	42835228	A	C	42835228	3	2	508	1	0	0	0	0	1	0	0	0	12388	101	4	5	1092	5	PPHLN1	12	42835228	Missense_Mutation	SNP	A	TCGA-BH-A0BV-01A-11W-A019-09		42835228	91016667	18	46059										
TMEM132D	0	genome.wustl.edu	37	chr12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	G													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	ctcctcccggcaaccaccgtINSgggggggctgaaccagctgg							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	12	130184704	130184705	-	G	INS	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	22	0	0	15	4	21.05	-	-	-	G	130184705	-	G	130184704	7	5	508	1	0	1	1	0	0	0	0	0	16142	1696	59	0	2712	0	TMEM132D	12	130184704	Frame_Shift_Ins	INS	-	TCGA-BH-A0BV-01A-11W-A019-09	87349476	130184704	3667191	19	46060										
UBL3	0	genome.wustl.edu	37	chr13	30351391	30351391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	tccgcttaccaaaatgaggcGcaaatttatctgaaagaaga	8	8	1	4			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	13	30351391	30351391	G	A	SNP	UBL3	ENST00000380680	human	ensembl	69_37n	-1	known	missense	c.37	p.R13C	1.000	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	-	no_errors	UBL3	HGNC	ENSG00000122042	119	0	0	39	15	27.78	-	-	-	A	30351391	G	A	30351391	3	1	508	1	0	0	0	0	1	0	0	0	16983	1087	38	1	332	1	UBL3	13	30351391	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		30351391	84818487	20	46061										
OR4M1	0	genome.wustl.edu	37	chr14	20248544	20248544	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	actggcctatcccagactcgGgaggtccaactagtcctatt	9	13	0	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	14	20248544	20248544	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	silent	c.63	p.R21	0.575	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	705	0	0	740	165	18.23	-	-	-	A	20248544	G	A	20248544	2	1	508	1	0	0	0	0	0	0	0	1	11148	1219	43	4		4	OR4M1	14	20248544	Silent	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		20248544	87100996	21	46062										
CALM1	0	genome.wustl.edu	37	chr14	90870228	90870228	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	aatggcaccattgacttcccCgaatttttgactatgatggc	8	10	0	3			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	14	90870228	90870228	C	T	SNP	CALM1	ENST00000356978	human	ensembl	69_37n	1	known	silent	c.201	p.P67	0.184	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	CALM1	HGNC	ENSG00000198668	135	0	0	52	27	34.18	-	-	-	T	90870228	C	T	90870228	2	4	508	1	0	0	0	0	0	0	0	1	2609	639	23	1		1	CALM1	14	90870228	Silent	SNP	C	TCGA-BH-A0BV-01A-11W-A019-09	70621684	90870228	16479312	22	46063										
IGDCC4	0	genome.wustl.edu	37	chr15	65681239	65681240	+	Frame_Shift_Ins	INS	-	-	G													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	atctccccgttgggctctgtINSgggggggcaccagtgcagcc							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	15	65681239	65681240	-	G	INS	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.2614_2613	p.T871fs	0.007:0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	25	0	0	16	2	11.11	-	-	-	G	65681240	-	G	65681239	7	5	508	1	0	1	1	0	0	0	0	0	7623	1696	59	0	1162	0	IGDCC4	15	65681239	Frame_Shift_Ins	INS	-	TCGA-BH-A0BV-01A-11W-A019-09		65681239	36850153	23	46064										
ARRDC4	0	genome.wustl.edu	37	chr15	98512383	98512383	+	Frame_Shift_Del	DEL	A	A	-													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	tccaatctatgcagaaatagAaaattgttcctctcgtctga							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	15	98512383	98512383	A	-	DEL	ARRDC4	ENST00000268042	human	ensembl	69_37n	1	known	frame_shift_del	c.656	p.N220fs	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450	123	0	0	55	28	33.33	-	-	-	-	98512383	A	-	98512383	7	5	508	1	0	1	0	1	0	0	0	0	989	246	9	0	674	0	ARRDC4	15	98512383	Frame_Shift_Del	DEL	A	TCGA-BH-A0BV-01A-11W-A019-09	32831144	98512383	4019009	24	46065										
NLRP1	0	genome.wustl.edu	37	chr17	5462379	5462379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gtagacagagggttgtggtgGtcttggaagtcagtgtgagt	18	3	2	3			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	5462379	5462379	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.1637	p.T546I	0.814	pfscan_NACHT_NTPase	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	188	0	0	124	54	30.34	-	-	-	A	5462379	G	A	5462379	3	1	508	1	0	0	0	0	1	0	0	0	10543	1261	44	4	2915	4	NLRP1	17	5462379	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		5462379	75732831	25	46066										
COX10	0	genome.wustl.edu	37	chr17	14110164	14110165	+	Frame_Shift_Ins	INS	-	-	T													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gaatcctctactcctggcagINStttcctcatttcaacgccct							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	14110164	14110165	-	T	INS	COX10	ENST00000261643	human	ensembl	69_37n	1	known	frame_shift_ins	c.966_967	p.P323fs	1.000:1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	158	0	0	81	19	19	-	-	-	T	14110165	-	T	14110164	7	5	508	1	0	1	1	0	0	0	0	0	3792	1020	36	0	992	0	COX10	17	14110164	Frame_Shift_Ins	INS	-	TCGA-BH-A0BV-01A-11W-A019-09	8647785	14110164	67085046	26	46067										
CD300A	0	genome.wustl.edu	37	chr17	72469816	72469816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gattttcctatgtgacaagaTtgtggagaccaaagggtcag	12	6	1	3			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	72469816	72469816	T	C	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	1	known	missense	c.182	p.I61T	0.018	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	165	0	0	103	58	36.02	-	-	-	C	72469816	T	C	72469816	3	2	508	1	0	0	0	0	1	0	0	0	3025	1493	52	5	188	5	CD300A	17	72469816	Missense_Mutation	SNP	T	TCGA-BH-A0BV-01A-11W-A019-09	58359652	72469816	8725394	27	46068										
USP36	0	genome.wustl.edu	37	chr17	76799860	76799861	+	Frame_Shift_Ins	INS	-	-	G													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	cctcttctcagaggggctctINSgggggggctcactggcctct							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	76799860	76799861	-	G	INS	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2417_2416	p.Q806fs	0.000:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	30	0	0	5	2	28.57	-	-	-	G	76799861	-	G	76799860	7	5	508	1	0	1	1	0	0	0	0	0	17164	1580	55	0	974	0	USP36	17	76799860	Frame_Shift_Ins	INS	-	TCGA-BH-A0BV-01A-11W-A019-09	4330044	76799860	4395350	28	46069										
GSK3A	0	genome.wustl.edu	37	chr19	42738787	42738787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	cgcggtgacacacgccctggGagtggatgtaggccaagctg	16	11	0	1			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	19	42738787	42738787	G	A	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.710	p.S237F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	48	0	0	26	19	42.22	-	-	-	A	42738787	G	A	42738787	3	1	508	1	0	0	0	0	1	0	0	0	6874	1174	41	2	769	2	GSK3A	19	42738787	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09		42738787	16390196	29	46070										
PORCN	0	genome.wustl.edu	37	chrX	48370989	48370990	+	Frame_Shift_Ins	INS	-	-	T													0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	cctacagagctgccggtggcINStgcagaaggtggcccggagc							TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	X	48370989	48370990	-	T	INS	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	frame_shift_ins	c.568_569	p.Q191fs	1.000:1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	13	0	0	5	5	50	-	-	-	T	48370990	-	T	48370989	7	5	508	1	0	1	1	0	0	0	0	0	12332	796	28	0	586	0	PORCN	23	48370989	Frame_Shift_Ins	INS	-	TCGA-BH-A0BV-01A-11W-A019-09		48370989	106899571	30	46071										
HEPH	0	genome.wustl.edu	37	chrX	65418840	65418840	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.436146804027472	1.69768934531451	3.22560975609756	1.51793400286944	0.206349206349206	0.776190476190475	0	gactgctttcagaggatattGagggcttccaagactccaat	10	9	1	3			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	X	65418840	65418840	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.1996	p.E666K	0.070	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	314	0	0	240	38	13.67	-	-	-	A	65418840	G	A	65418840	3	1	508	1	0	0	0	0	1	0	0	0	7105	1291	45	2	2038	2	HEPH	23	65418840	Missense_Mutation	SNP	G	TCGA-BH-A0BV-01A-11W-A019-09	17047851	65418840	89851720	31	46072										
AHDC1	0	genome.wustl.edu	37	chr1	27876098	27876098	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gaggagtcatccgaatcgagCagcgagcgaaagtagccggt	15	9	1	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	1	27876098	27876098	C	A	SNP	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	silent	c.2529	p.L843	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	9	0	0	13	7	35	-	-	-	A	27876098	C	A	27876098	2	1	509	1	0	0	0	0	0	0	0	1	412	697	25	4		4	AHDC1	1	27876098	Silent	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		27876098	221374523	1	46073										
PHC2	0	genome.wustl.edu	37	chr1	33797024	33797024	+	Missense_Mutation	SNP	T	T	G													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agtccacccggccacagagcTcacacttgagtttgagggga							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	33797024	33797024	T	G	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.1931	p.E644A	1.000	pfscan_Znf_FCS	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	119	0	0	82	44	34.92	-	-	-	G	33797024	T	G	33797024	3	3	509	1	0	0	0	0	1	0	0	0	11891	1551	54	5	664	5	PHC2	1	33797024	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	5920926	33797024	215453597	2	46074	380	2								
PHC2	0	genome.wustl.edu	37	chr1	33797025	33797025	+	Missense_Mutation	SNP	C	C	T													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gtccacccggccacagagctCacacttgagtttgaggggag							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	33797025	33797025	C	T	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.1930	p.E644K	1.000	pfscan_Znf_FCS	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	121	0	0	81	44	35.2	-	-	-	T	33797025	C	T	33797025	3	4	509	1	0	0	0	0	1	0	0	0	11891	835	29	2	665	2	PHC2	1	33797025	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	1	33797025	215453596	3	46075	380	2								
CSMD2	0	genome.wustl.edu	37	chr1	34276437	34276437	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gaggtgatgatgcccgagggGcctcgaaggtgggcatcaca	17	9	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	34276437	34276437	G	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.1353	p.G451	0.980	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	55	0	0	55	31	36.05	-	-	-	T	34276437	G	T	34276437	2	4	509	1	0	0	0	0	0	0	0	1	3977	1190	42	4		4	CSMD2	1	34276437	Silent	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	479412	34276437	214974184	4	46076										
PPM1J	0	genome.wustl.edu	37	chr1	113253093	113253093	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agcccctacctgctgtggtcAttaggctcataggccgacag	11	13	2	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	113253093	113253093	A	G	SNP	PPM1J	ENST00000309276	human	ensembl	69_37n	-1	known	silent	c.1359	p.N453	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1J	HGNC	ENSG00000155367	124	0	0	130	46	26.14	-	-	-	G	113253093	A	G	113253093	2	3	509	1	0	0	0	0	0	0	0	1	12419	214	8	5		5	PPM1J	1	113253093	Silent	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	78976656	113253093	135997528	5	46077										
BCL9	0	genome.wustl.edu	37	chr1	147092549	147092550	+	Frame_Shift_Del	DEL	TG	TG	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ttccccaggcattaaccctcTgaagtctcccacgatgcacc							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	147092549	147092550	TG	-	DEL	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	frame_shift_del	c.2588_2589	p.L863fs	1.000:1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	49	0	0	92	13	12.38	-	-	-	-	147092550	TG	-	147092549	7	5	509	1	0	1	0	1	0	0	0	0	1385	1580	55	0	2606	0	BCL9	1	147092549	Frame_Shift_Del	DEL	TG	TCGA-BH-A0BW-01A-11D-A10Y-09	33839456	147092549	102158072	6	46078										
CRTC2	0	genome.wustl.edu	37	chr1	153923850	153923850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aaactcagggggctgaggggCacacggcggtggtgggggga	22	7	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	153923850	153923850	C	T	SNP	CRTC2	ENST00000461638	human	ensembl	69_37n	-1	known	missense	c.1036	p.A346T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRTC2	HGNC	ENSG00000160741	26	0	0	50	11	17.74	-	-	-	T	153923850	C	T	153923850	3	4	509	1	0	0	0	0	1	0	0	0	3930	697	25	4	807	4	CRTC2	1	153923850	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	6831301	153923850	95326771	7	46079										
NTRK1	0	genome.wustl.edu	37	chr1	156843434	156843434	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ctggcccacagtcccggccaGtgtgcagctgcacacggcgg	14	16	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	156843434	156843434	G	T	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.860	p.S287I	0.217	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	8	0	0	26	12	31.58	-	-	-	T	156843434	G	T	156843434	3	4	509	1	0	0	0	0	1	0	0	0	10779	1029	36	4	1020	4	NTRK1	1	156843434	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	2919584	156843434	92407187	8	46080										
GORAB	0	genome.wustl.edu	37	chr1	170521402	170521402	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gaagtagaatcaaggagaccAgtggttcgtttagagaggcc	14	6	1	3			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	170521402	170521402	A	T	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	silent	c.984	p.P328	0.105	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	190	0	0	118	34	22.37	-	-	-	T	170521402	A	T	170521402	2	4	509	1	0	0	0	0	0	0	0	1	6623	175	7	5		5	GORAB	1	170521402	Silent	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	13677968	170521402	78729219	9	46081										
PPFIA4	0	genome.wustl.edu	37	chr1	203030799	203030799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ggacagtgaggagggcagctGggctcaggtaagactcccta	16	9	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	203030799	203030799	G	T	SNP	PPFIA4	ENST00000367240	human	ensembl	69_37n	1	known	missense	c.2804	p.W935L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_Prefoldin,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847	152	1	0.65	120	94	43.93	-	-	-	T	203030799	G	T	203030799	3	4	509	1	0	0	0	0	1	0	0	0	12385	1357	47	4	1391	4	PPFIA4	1	203030799	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	32509397	203030799	46219822	10	46082										
FAM177B	0	genome.wustl.edu	37	chr1	222920385	222920385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ttcctgggggccctacctacGattttgggcaggacgaatag	13	10	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	222920385	222920385	G	A	SNP	FAM177B	ENST00000360827	human	ensembl	69_37n	1	known	missense	c.203	p.R68Q	0.530	NULL	NULL	-	no_errors	FAM177B	HGNC	ENSG00000197520	496	0	0	115	126	52.28	-	-	-	A	222920385	G	A	222920385	3	1	509	1	0	0	0	0	1	0	0	0	5542	1058	37	1	209	1	FAM177B	1	222920385	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	19889586	222920385	26330236	11	46083										
OR2T29	0	genome.wustl.edu	37	chr1	248722428	248722429	+	Frame_Shift_Ins	INS	-	-	CG													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cacgtagcggtcataggccaINStggtggctagaaggaaaaat							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	1	248722428	248722429	-	CG	INS	OR2T29	ENST00000328570	human	ensembl	69_37n	-1	known	frame_shift_ins	c.365_364	p.M122fs	1.000:0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T29	HGNC	ENSG00000182783	13	0	0	18	7	28	-	-	-	CG	248722429	-	CG	248722428	7	5	509	1	0	1	1	0	0	0	0	0	11095	217	8	0	586	0	OR2T29	1	248722428	Frame_Shift_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09	25802043	248722428	528193	12	46084										
TPO	0	genome.wustl.edu	37	chr2	1426879	1426879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gcaagcgcctggtggacaccGccatgtacgccacgatgcag	13	14	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	1426879	1426879	G	A	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	missense	c.157	p.A53T	0.006	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	36	0	0	55	13	19.12	-	-	-	A	1426879	G	A	1426879	3	1	509	1	0	0	0	0	1	0	0	0	16506	1087	38	1	163	1	TPO	2	1426879	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		1426879	241772494	13	46085										
PXDN	0	genome.wustl.edu	37	chr2	1667407	1667407	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cacagtcaggtgggccacgaCcttctgggagccgatgatgt	14	11	2	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	1667407	1667407	C	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.1537	p.V513F	0.991	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	14	0	0	38	15	27.78	-	-	-	A	1667407	C	A	1667407	3	1	509	1	0	0	0	0	1	0	0	0	12930	507	18	4	2950	4	PXDN	2	1667407	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	240528	1667407	241531966	14	46086										
NT5C1B	0	genome.wustl.edu	37	chr2	18765450	18765450	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agaccctcttgctcgtagatTttcctgccgtccaccatgtt	7	14	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	18765450	18765450	T	A	SNP	NT5C1B	ENST00000359846	human	ensembl	69_37n	-1	known	missense	c.975	p.K325N	1.000	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013	67	0	0	171	31	15.35	-	-	-	A	18765450	T	A	18765450	3	1	509	1	0	0	0	0	1	0	0	0	10759	1838	64	5	877	5	NT5C1B	2	18765450	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	17098043	18765450	224433923	15	46087										
RIF1	0	genome.wustl.edu	37	chr2	152324648	152324648	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agtgttaaaacttctcctacTacacaatctaaggtaagcta	5	9	2	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	152324648	152324648	T	G	SNP	RIF1	ENST00000454583	human	ensembl	69_37n	1	known	missense	c.1556	p.L519R	0.259	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIF1	HGNC	ENSG00000080345	242	1	0.41	92	32	25.81	-	-	-	G	152324648	T	G	152324648	3	3	509	1	0	0	0	0	1	0	0	0	13443	1509	53	5	6853	5	RIF1	2	152324648	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	133559198	152324648	90874725	16	46088										
TTN	0	genome.wustl.edu	37	chr2	179498292	179498292	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aagggacaatctcttcaccaTctttgaaccatttcactggt	6	11	4	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	179498292	179498292	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.35090	p.D11697V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	248	0	0	140	54	27.69	-	-	-	A	179498292	T	A	179498292	3	1	509	1	0	0	0	0	1	0	0	0	16832	1435	50	5	65423	5	TTN	2	179498292	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	27173644	179498292	63701081	17	46089										
ANKAR	0	genome.wustl.edu	37	chr2	190611205	190611206	+	Frame_Shift_Ins	INS	-	-	A													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	atgggactcttcaaagcaacINSaaaaaagaccaaggattccc							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	190611205	190611206	-	A	INS	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	frame_shift_ins	c.4157_4158	p.T1389fs	0.056:0.047	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	196	0	0	64	27	29.67	-	-	-	A	190611206	-	A	190611205	7	5	509	1	0	1	1	0	0	0	0	0	623	478	17	0	4243	0	ANKAR	2	190611205	Frame_Shift_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09	11112913	190611205	52588168	18	46090										
PMS1	0	genome.wustl.edu	37	chr2	190718672	190718672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	catgtatttctagttaatccGacatcattacaatctgaaat	4	8	3	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	190718672	190718672	G	A	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.830	p.R277Q	1.000	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	344	0	0	94	37	28.24	-	-	-	A	190718672	G	A	190718672	3	1	509	1	0	0	0	0	1	0	0	0	12216	1058	37	1	856	1	PMS1	2	190718672	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	107467	190718672	52480701	19	46091										
DNAH12	0	genome.wustl.edu	37	chr3	57401248	57401248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cattagcttatccttcacatAcacagattttcctgtacccg	4	13	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	3	57401248	57401248	A	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.5701	p.Y1901H	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	264	0	0	76	49	39.2	-	-	-	G	57401248	A	G	57401248	3	3	509	1	0	0	0	0	1	0	0	0	4636	391	14	5	3665	5	DNAH12	3	57401248	Missense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09		57401248	140621182	20	46092										
POLQ	0	genome.wustl.edu	37	chr3	121207554	121207554	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gggctttctggagtcaggatAtcaaccccatgtgaatcact	10	10	4	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	3	121207554	121207554	A	G	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	silent	c.4224	p.D1408	0.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	200	0	0	98	44	30.99	-	-	-	G	121207554	A	G	121207554	2	3	509	1	0	0	0	0	0	0	0	1	12282	446	16	5		5	POLQ	3	121207554	Silent	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	63806306	121207554	76814876	21	46093										
SLC34A2	0	genome.wustl.edu	37	chr4	25678181	25678181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ctgccgcgtgtgctgccgcgCgtgctgcttgctgtgtgact	15	13	0	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	25678181	25678181	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	1	known	missense	c.1883	p.A628V	0.030	NULL	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	8	0	0	27	11	28.95	-	-	-	T	25678181	C	T	25678181	3	4	509	1	0	0	0	0	1	0	0	0	14657	768	27	1	1929	1	SLC34A2	4	25678181	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		25678181	165476095	22	46094										
FRAS1	0	genome.wustl.edu	37	chr4	79236807	79236807	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ccaggtgtcttacctgtactGagaagacagtgctgcatgat	11	9	1	3			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	79236807	79236807	G	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	nonsense	c.1738	p.E580*	0.002	superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_EGF-like	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	220	0	0	270	70	20.53	-	-	-	T	79236807	G	T	79236807	4	4	509	1	0	0	0	0	0	1	0	0	6090	1291	45	2	1800	2	FRAS1	4	79236807	Nonsense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	53558626	79236807	111917469	23	46095										
WDFY3	0	genome.wustl.edu	37	chr4	85748077	85748077	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tatgttgttagggaagttatCagattaaccagatctttcaa	8	5	3	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	85748077	85748077	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	370	0	0	244	49	16.72	-	-	-	G	85748077	C	G	85748077	2	3	509	1	0	0	0	0	0	0	0	1	17367	813	29	2		2	WDFY3	4	85748077	Silent	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	6511270	85748077	105406199	24	46096										
TBCK	0	genome.wustl.edu	37	chr4	107230071	107230071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	catcatgtggcagagccgagGcaaagaaggtaaaggctccc	13	10	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	107230071	107230071	G	A	SNP	TBCK	ENST00000273980	human	ensembl	69_37n	-1	known	missense	c.47	p.A16V	1.000	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_cat_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348	329	1	0.3	237	142	37.47	-	-	-	A	107230071	G	A	107230071	3	1	509	1	0	0	0	0	1	0	0	0	15731	1203	42	4	2734	4	TBCK	4	107230071	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	21481994	107230071	83924205	25	46097										
TTC29	0	genome.wustl.edu	37	chr4	147741361	147741361	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tttcttgcaattttcacaaaTtttttcaagtatttaattgc	3	6	3	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	147741361	147741361	T	A	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	missense	c.1095	p.K365N	0.624	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	435	0	0	152	53	25.85	-	-	-	A	147741361	T	A	147741361	3	1	509	1	0	0	0	0	1	0	0	0	16793	1490	52	5	426	5	TTC29	4	147741361	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	40511290	147741361	43412915	26	46098										
ODZ3	0	genome.wustl.edu	37	chr4	183696086	183696086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tttagatcagttaagaaacaGctaccagattggttatgacg	9	6	1	4			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	183696086	183696086	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.5084	p.S1695N	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	67	0	0	44	14	24.14	-	-	-	A	183696086	G	A	183696086	3	1	509	1	0	0	0	0	1	0	0	0	10909	971	34	4	5174	4	ODZ3	4	183696086	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	35954725	183696086	7458190	27	46099										
PTGER4	0	genome.wustl.edu	37	chr5	40681725	40681725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gtgcttgtgtgcggcgcgctGctccgcatgcaccgccagtt	14	14	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	5	40681725	40681725	G	A	SNP	PTGER4	ENST00000302472	human	ensembl	69_37n	1	known	silent	c.630	p.L210	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prost_EP4_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522	9	0	0	4	5	55.56	-	-	-	A	40681725	G	A	40681725	2	1	509	1	0	0	0	0	0	0	0	1	12826	1306	46	4		4	PTGER4	5	40681725	Silent	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		40681725	140233535	28	46100										
MSH3	0	genome.wustl.edu	37	chr5	80064756	80064756	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	attgacgagatccgaatgcaTttgcaagaaatacgaaaaat	8	6	0	3			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	5	80064756	80064756	T	A	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.2187	p.H729Q	1.000	pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	318	0	0	55	48	46.6	-	-	-	A	80064756	T	A	80064756	3	1	509	1	0	0	0	0	1	0	0	0	9943	1490	52	5	2245	5	MSH3	5	80064756	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	39383031	80064756	100850504	29	46101										
GRPEL2	0	genome.wustl.edu	37	chr5	148730786	148730786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aagatggctacaaacttcatGgccgcaccattaggcttgcc	9	12	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	5	148730786	148730786	G	A	SNP	GRPEL2	ENST00000329271	human	ensembl	69_37n	1	known	missense	c.619	p.G207S	1.000	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL2	HGNC	ENSG00000164284	47	0	0	25	15	37.5	-	-	-	A	148730786	G	A	148730786	3	1	509	1	0	0	0	0	1	0	0	0	6858	1348	47	4	633	4	GRPEL2	5	148730786	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	68666030	148730786	32184474	30	46102										
JARID2	0	genome.wustl.edu	37	chr6	15496730	15496730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cactaaggaggtgggggggcGgcagctgcgggagggcctgc	22	9	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	6	15496730	15496730	G	A	SNP	JARID2	ENST00000341776	human	ensembl	69_37n	1	known	missense	c.1274	p.R425Q	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	14	0	0	14	7	33.33	-	-	-	A	15496730	G	A	15496730	3	1	509	1	0	0	0	0	1	0	0	0	7999	1116	39	1	1300	1	JARID2	6	15496730	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		15496730	155618337	31	46103										
APOBEC2	0	genome.wustl.edu	37	chr6	41029073	41029073	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tccttgacctacagagaacgGctgcctgccaacttctttaa	7	13	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	41029073	41029073	G	T	SNP	APOBEC2	ENST00000244669	human	ensembl	69_37n	1	known	silent	c.138	p.R46	0.998	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC2	HGNC	ENSG00000124701	103	0	0	64	45	41.28	-	-	-	T	41029073	G	T	41029073	2	4	509	1	0	0	0	0	0	0	0	1	790	1190	42	4		4	APOBEC2	6	41029073	Silent	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	25532343	41029073	130085994	32	46104										
CUL7	0	genome.wustl.edu	37	chr6	43016268	43016268	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cataaccctccaccagacgcTgcaggggagtgttgggactc	12	13	0	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	43016268	43016268	T	A	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.2117	p.Q706L	0.276	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	66	0	0	74	33	30.56	-	-	-	A	43016268	T	A	43016268	3	1	509	1	0	0	0	0	1	0	0	0	4091	1580	55	5	3307	5	CUL7	6	43016268	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	1987195	43016268	128098799	33	46105										
POLR1C	0	genome.wustl.edu	37	chr6	43487161	43487161	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ccattgccaatgcttttcgaCgaattctgctagctgaggta	9	10	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	43487161	43487161	C	T	SNP	POLR1C	ENST00000372389	human	ensembl	69_37n	1	known	nonsense	c.232	p.R78*	0.105	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,superfamily_DNA-dir_RNA_pol_insert,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR1C	HGNC	ENSG00000171453	225	0	0	151	52	25.62	-	-	-	T	43487161	C	T	43487161	4	4	509	1	0	0	0	0	0	1	0	0	12285	528	19	1	242	1	POLR1C	6	43487161	Nonsense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	470893	43487161	127627906	34	46106										
PKHD1	0	genome.wustl.edu	37	chr6	51484286	51484286	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	caactggtgggggcactggtTcaccttgcccagcatgacct	12	13	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	51484286	51484286	T	A	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.11818	p.N3940Y	0.001	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	23	0	0	31	23	42.59	-	-	-	A	51484286	T	A	51484286	3	1	509	1	0	0	0	0	1	0	0	0	12045	1783	62	5	410	5	PKHD1	6	51484286	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	7997125	51484286	119630781	35	46107										
TNRC18	0	genome.wustl.edu	37	chr7	5355696	5355696	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tccccatcgtcctccaggtcCagtaaccctgtgggaagagg	11	14	0	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	5355696	5355696	C	A	SNP	TNRC18	ENST00000328270	human	ensembl	69_37n	-1	putative	nonsense	c.193	p.G65*	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNRC18	HGNC	ENSG00000182095	53	0	0	43	28	39.44	-	-	-	A	5355696	C	A	5355696	4	1	509	1	0	0	0	0	0	1	0	0	16434	581	21	4	2177	4	TNRC18	7	5355696	Nonsense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		5355696	153782967	36	46108										
CLDN15	0	genome.wustl.edu	37	chr7	100876136	100876136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ggttccggggtacaaggggtCgaagaagtcccgggtgatgt	18	7	0	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	100876136	100876136	C	G	SNP	CLDN15	ENST00000308344	human	ensembl	69_37n	-1	known	missense	c.442	p.D148H	0.994	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin15	-	no_errors	CLDN15	HGNC	ENSG00000106404	28	0	0	18	5	21.74	-	-	-	G	100876136	C	G	100876136	3	3	509	1	0	0	0	0	1	0	0	0	3506	884	31	3	256	3	CLDN15	7	100876136	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	95520440	100876136	58262527	37	46109										
MLL3	0	genome.wustl.edu	37	chr7	151871273	151871273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gtgccatcactttatttataCctttaagggccaccattttg	6	10	1	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	151871273	151871273	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.9317	p.G3106D	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	446	0	0	146	59	28.78	-	-	-	T	151871273	C	T	151871273	3	4	509	1	0	0	0	0	1	0	0	0	9693	507	18	4	5502	4	MLL3	7	151871273	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	50995137	151871273	7267390	38	46110										
AGPAT5	0	genome.wustl.edu	37	chr8	6590094	6590097	+	Frame_Shift_Del	DEL	TATG	TATG	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tgtggcagcatggaggaatcTatgtaaagcgcagtgccaaa							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TATG	TATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	6590094	6590097	TATG	-	DEL	AGPAT5	ENST00000285518	human	ensembl	69_37n	1	known	frame_shift_del	c.418_421	p.Y140fs	1.000:1.000:0.996:1.000	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT5	HGNC	ENSG00000155189	114	0	0	52	37	41.11	-	-	-	-	6590097	TATG	-	6590094	7	5	509	1	0	1	0	1	0	0	0	0	390	1522	53	0	432	0	AGPAT5	8	6590094	Frame_Shift_Del	DEL	TATG	TCGA-BH-A0BW-01A-11D-A10Y-09		6590094	139773928	39	46111										
PKHD1L1	0	genome.wustl.edu	37	chr8	110519976	110519976	+	Frame_Shift_Del	DEL	G	G	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gacatagatggctcctttctGgggaatgctggttctgtgat							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	110519976	110519976	G	-	DEL	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	frame_shift_del	c.11079	p.N3695fs	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	275	0	0	115	42	26.58	-	-	-	-	110519976	G	-	110519976	7	5	509	1	0	1	0	1	0	0	0	0	12046	1335	47	0	11353	0	PKHD1L1	8	110519976	Frame_Shift_Del	DEL	G	TCGA-BH-A0BW-01A-11D-A10Y-09	103929882	110519976	35844046	40	46112										
TRPS1	0	genome.wustl.edu	37	chr8	116430602	116430602	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	acacgcgttgcatacatatcCgccatttgcattctttcgcc	6	14	1	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	116430602	116430602	C	G	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	missense	c.2779	p.G927R	1.000	pfam_Znf_GATA,smart_Znf_GATA,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	164	0	0	215	24	10.04	-	-	-	G	116430602	C	G	116430602	3	3	509	1	0	0	0	0	1	0	0	0	16689	661	23	3	1113	3	TRPS1	8	116430602	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	5910626	116430602	29933420	41	46113										
ENPP2	0	genome.wustl.edu	37	chr8	120569768	120569768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gatgctcagaaagttaaatcTcgctctcatatgtatgcagg	9	8	3	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	120569768	120569768	T	C	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.2741	p.E914G	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	260	0	0	197	209	51.48	-	-	-	C	120569768	T	C	120569768	3	2	509	1	0	0	0	0	1	0	0	0	5167	1551	54	5	10	5	ENPP2	8	120569768	Missense_Mutation	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	4139166	120569768	25794254	42	46114										
OR1J1	0	genome.wustl.edu	37	chr9	125239431	125239431	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gctggatgggggaagaaaatAgagaccaataattgtccgat	13	5	0	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	125239431	125239431	A	G	SNP	OR1J1	ENST00000259357	human	ensembl	69_37n	-1	known	missense	c.775	p.Y259H	0.147	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1J1	HGNC	ENSG00000136834	272	0	0	186	55	22.82	-	-	-	G	125239431	A	G	125239431	3	3	509	1	0	0	0	0	1	0	0	0	11032	420	15	5	196	5	OR1J1	9	125239431	Missense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09		125239431	15974000	43	46115										
SPTAN1	0	genome.wustl.edu	37	chr9	131378115	131378115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tggatgacgaggagtcctggAtcaagtatgtcttctcagcc	12	9	3	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	131378115	131378115	A	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.5353	p.I1785V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	51	0	0	54	22	28.95	-	-	-	G	131378115	A	G	131378115	3	3	509	1	0	0	0	0	1	0	0	0	15208	333	12	5	5511	5	SPTAN1	9	131378115	Missense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	6138684	131378115	9835316	44	46116										
CACNA1B	0	genome.wustl.edu	37	chr9	141012420	141012420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aaaaccaagagagtggcatcAaagagtctgtctcctggggc	12	9	3	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	141012420	141012420	A	G	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.5803	p.K1935E	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	24	0	0	25	7	21.88	-	-	-	G	141012420	A	G	141012420	3	3	509	1	0	0	0	0	1	0	0	0	2564	131	5	5	5966	5	CACNA1B	9	141012420	Missense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	9634305	141012420	201011	45	46117										
LGALS12	0	genome.wustl.edu	37	chr11	63276064	63276064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cgatttttggaggcctgcatGcaggcaagatggtcatgctg	14	8	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	11	63276064	63276064	G	A	SNP	LGALS12	ENST00000340246	human	ensembl	69_37n	1	known	missense	c.175	p.A59T	0.507	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS12	HGNC	ENSG00000133317	164	0	0	143	42	22.7	-	-	-	A	63276064	G	A	63276064	3	1	509	1	0	0	0	0	1	0	0	0	8793	1319	46	4	181	4	LGALS12	11	63276064	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		63276064	71730452	46	46118										
WNK1	0	genome.wustl.edu	37	chr12	862832	862832	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tggctccagctccgattcctCcgtgggggagaaactgggag	15	11	0	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	12	862832	862832	C	G	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.101	p.S34C	0.981	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	14	0	0	11	8	42.11	-	-	-	G	862832	C	G	862832	3	3	509	1	0	0	0	0	1	0	0	0	17474	855	30	2	103	2	WNK1	12	862832	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		862832	132989063	47	46119										
ACRBP	0	genome.wustl.edu	37	chr12	6753326	6753326	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ccagggttttggtttctccaGtaggagttctcatcatatat	9	8	3	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	6753326	6753326	G	T	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	nonsense	c.921	p.Y307*	0.893	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	62	0	0	30	25	45.45	-	-	-	T	6753326	G	T	6753326	4	4	509	1	0	0	0	0	0	1	0	0	170	1024	36	4	734	4	ACRBP	12	6753326	Nonsense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	5890494	6753326	127098569	48	46120										
ZNF384	0	genome.wustl.edu	37	chr12	6788134	6788134	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gcagtcatcagtcctgtagaCggcacagggaccaccgtgat	12	12	2	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	6788134	6788134	C	T	SNP	ZNF384	ENST00000361959	human	ensembl	69_37n	-1	known	silent	c.282	p.P94	0.886	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746	49	0	0	29	51	63.75	-	-	-	T	6788134	C	T	6788134	2	4	509	1	0	0	0	0	0	0	0	1	17971	523	19	1		1	ZNF384	12	6788134	Silent	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	34808	6788134	127063761	49	46121										
DDX55	0	genome.wustl.edu	37	chr12	124103295	124103295	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gtccatggccctggctgacaGagctgtgtttgaaaagggca	14	9	0	3			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	124103295	124103295	G	C	SNP	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	missense	c.1244	p.R415T	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	156	0	0	117	52	30.77	-	-	-	C	124103295	G	C	124103295	3	2	509	1	0	0	0	0	1	0	0	0	4404	942	33	2	1290	2	DDX55	12	124103295	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	117315161	124103295	9748600	50	46122										
TMEM132D	0	genome.wustl.edu	37	chr12	129558688	129558689	+	Frame_Shift_Ins	INS	-	-	T													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gaacagctgcccattgatgcINSttttttgggagtttgtgctg							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	129558688	129558689	-	T	INS	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3032_3031	p.S1011fs	0.003:0.002	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	218	0	0	94	73	43.71	-	-	-	T	129558689	-	T	129558688	7	5	509	1	0	1	1	0	0	0	0	0	16142	797	28	0	271	0	TMEM132D	12	129558688	Frame_Shift_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09	5455393	129558688	4293207	51	46123										
RB1	0	genome.wustl.edu	37	chr13	48881488	48881489	+	Frame_Shift_Ins	INS	-	-	AG													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	taaagataccagatcatgtcINSagagagagagcttggttaac							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	13	48881488	48881489	-	AG	INS	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_ins	c.210_211	p.A73fs	1.000:1.000	superfamily_FH2_actin-bd,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	644	0	0	172	87	33.59	-	-	-	AG	48881489	-	AG	48881488	7	5	509	1	0	1	1	0	0	0	0	0	13181	813	29	0	216	0	RB1	13	48881488	Frame_Shift_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09		48881488	66288390	52	46124										
ATP11A	0	genome.wustl.edu	37	chr13	113512489	113512489	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	caaggaaggccgccaggctgCcaggaacagcgactatgcaa	13	12	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	13	113512489	113512489	C	A	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.2552	p.A851D	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	220	0	0	108	102	48.57	-	-	-	A	113512489	C	A	113512489	3	1	509	1	0	0	0	0	1	0	0	0	1123	739	26	4	2638	4	ATP11A	13	113512489	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	64631001	113512489	1657389	53	46125										
BAZ1A	0	genome.wustl.edu	37	chr14	35245193	35245193	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ttctgcttttctcttgtaacAaagtttcttttaaggcactt	5	8	3	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	14	35245193	35245193	A	T	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	nonsense	c.2765	p.L922*	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	190	0	0	39	24	38.1	-	-	-	T	35245193	A	T	35245193	4	4	509	1	0	0	0	0	0	1	0	0	1333	131	5	5	1945	5	BAZ1A	14	35245193	Nonsense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09		35245193	72104347	54	46126										
DUOX1	0	genome.wustl.edu	37	chr15	45428084	45428084	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agaggctggcccgccagcacCcagactgggaggacgaggag	17	12	0	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	15	45428084	45428084	C	G	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.802	p.P268A	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	41	0	0	24	7	22.58	-	-	-	G	45428084	C	G	45428084	3	3	509	1	0	0	0	0	1	0	0	0	4835	623	22	4	824	4	DUOX1	15	45428084	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		45428084	57103308	55	46127										
BAIAP3	0	genome.wustl.edu	37	chr16	1394620	1394620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agccaggaccacagcgcctgCctgggctggttgtgctggct	15	13	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	16	1394620	1394620	C	T	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	missense	c.1783	p.P595S	0.000	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	35	0	0	93	39	29.55	-	-	-	T	1394620	C	T	1394620	3	4	509	1	0	0	0	0	1	0	0	0	1308	739	26	4	1857	4	BAIAP3	16	1394620	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		1394620	88960133	56	46128										
DNASE1L2	0	genome.wustl.edu	37	chr16	2287303	2287303	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	atgtacctgttcgtgtacagGtgaggggcgggccgcaggga	18	8	0	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	16	2287303	2287303	G	A	SNP	DNASE1L2	ENST00000320700	human	ensembl	69_37n	1	known	splice_site	c.317+1	e3+1	1.000	-	-	-	no_errors	DNASE1L2	HGNC	ENSG00000167968	10	0	0	30	6	16.67	-	-	-	A	2287303	G	A	2287303	5	1	509	1	0	0	0	0	0	0	1	0	4697	1275	44	4	328	4	DNASE1L2	16	2287303	Splice_Site	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	892683	2287303	88067450	57	46129										
TP53	0	genome.wustl.edu	37	chr17	7579312	7579312	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agcccctcagggcaactgacCgtgcaagtcacagacttggc	11	14	2	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	7579312	7579312	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	silent	c.375	p.T125	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	20	0	0	21	13	38.24	-	-	-	G	7579312	C	G	7579312	2	3	509	1	0	0	0	0	0	0	0	1	16477	666	23	3		3	TP53	17	7579312	Silent	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		7579312	73615898	58	46130										
DNAH9	0	genome.wustl.edu	37	chr17	11701070	11701070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	accacaatgaagtcaacacaGtgatggacctagttctcttt	7	10	2	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	11701070	11701070	G	C	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.8380	p.V2794L	0.989	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	192	0	0	121	61	33.52	-	-	-	C	11701070	G	C	11701070	3	2	509	1	0	0	0	0	1	0	0	0	4643	1029	36	4	8550	4	DNAH9	17	11701070	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	4121758	11701070	69494140	59	46131										
SARM1	0	genome.wustl.edu	37	chr17	26723044	26723044	+	Frame_Shift_Del	DEL	A	A	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tgcttactttcaacggtatcAagtgagccccagggccctgg							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	26723044	26723044	A	-	DEL	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	frame_shift_del	c.1942	p.K648fs	1.000	smart_TIR_dom	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	41	0	0	82	26	24.07	-	-	-	-	26723044	A	-	26723044	7	5	509	1	0	1	0	1	0	0	0	0	13929	144	5	0	2072	0	SARM1	17	26723044	Frame_Shift_Del	DEL	A	TCGA-BH-A0BW-01A-11D-A10Y-09	15021974	26723044	54472166	60	46132										
ERN1	0	genome.wustl.edu	37	chr17	62133220	62133221	+	In_Frame_Ins	INS	-	-	GCT													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tccaggtgggtggaagggcaINSgctgctgctgctgctgctgc							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	62133220	62133221	-	GCT	INS	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	in_frame_ins	c.1487_1486	p.496in_frame_insQ	1.000:0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	17	0	0	25	14	35.9	-	-	-	GCT	62133221	-	GCT	62133220	7	5	509	1	0	1	1	0	0	0	0	0	5274	188	7	0	1486	0	ERN1	17	62133220	In_Frame_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09	35410176	62133220	19061990	61	46133										
BTBD17	0	genome.wustl.edu	37	chr17	72357932	72357932	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cagaagctgccccaggacccAggcttggagtagcctctcct	11	15	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	72357932	72357932	A	C	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	silent	c.27	p.P9	0.012	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	14	0	0	47	11	18.64	-	-	-	C	72357932	A	C	72357932	2	2	509	1	0	0	0	0	0	0	0	1	1550	175	7	5		5	BTBD17	17	72357932	Silent	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	10224712	72357932	8837278	62	46134										
QRICH2	0	genome.wustl.edu	37	chr17	74289101	74289101	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aatctgccagactggatcaaAtcatgctgctctgtgccagg	10	11	4	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	74289101	74289101	A	C	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.1209	p.D403E	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	98	0	0	149	39	20.42	-	-	-	C	74289101	A	C	74289101	3	2	509	1	0	0	0	0	1	0	0	0	12963	98	4	5	3846	5	QRICH2	17	74289101	Missense_Mutation	SNP	A	TCGA-BH-A0BW-01A-11D-A10Y-09	1931169	74289101	6906109	63	46135										
SIRT7	0	genome.wustl.edu	37	chr17	79872286	79872286	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cccaaagtgcacaatggtgtCccgcagctgggtcccacact	10	15	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	79872286	79872286	C	A	SNP	SIRT7	ENST00000328666	human	ensembl	69_37n	-1	known	missense	c.700	p.D234Y	1.000	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT7	HGNC	ENSG00000187531	14	0	0	63	13	17.11	-	-	-	A	79872286	C	A	79872286	3	1	509	1	0	0	0	0	1	0	0	0	14432	855	30	2	518	2	SIRT7	17	79872286	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	5583185	79872286	1322924	64	46136										
LAMA1	0	genome.wustl.edu	37	chr18	7049147	7049147	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tcatgagatctgcattgagcGttctaatgcgttgcaagcga	11	8	3	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	18	7049147	7049147	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.698	p.T233M	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	125	0	0	87	25	22.32	-	-	-	A	7049147	G	A	7049147	3	1	509	1	0	0	0	0	1	0	0	0	8659	1145	40	1	8765	1	LAMA1	18	7049147	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		7049147	71028101	65	46137										
ABCA7	0	genome.wustl.edu	37	chr19	1041509	1041509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tcccacctattctcccccagGtccagctcctggtcgaattg	7	17	1	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	1041509	1041509	G	A	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.67	p.V23I	0.679	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	100	0	0	79	51	39.23	-	-	-	A	1041509	G	A	1041509	3	1	509	1	0	0	0	0	1	0	0	0	37	1275	44	4	73	4	ABCA7	19	1041509	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		1041509	58087474	66	46138										
DPY19L3	0	genome.wustl.edu	37	chr19	32928151	32928151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	acaccttatttgggctccagGcgatctatgtcacagctctc	8	13	3	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	32928151	32928151	G	A	SNP	DPY19L3	ENST00000342179	human	ensembl	69_37n	1	known	missense	c.502	p.A168T	0.979	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	507	0	0	310	82	20.87	-	-	-	A	32928151	G	A	32928151	3	1	509	1	0	0	0	0	1	0	0	0	4777	1203	42	4	520	4	DPY19L3	19	32928151	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	31886642	32928151	26200832	67	46139										
ZNF585A	0	genome.wustl.edu	37	chr19	37643174	37643174	+	Frame_Shift_Del	DEL	T	T	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ctgtctctctccagtgtgaaTtttctgatgtatattgaggt							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	37643174	37643174	T	-	DEL	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	frame_shift_del	c.1627	p.I543fs	0.977	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	333	0	0	188	66	25.48	-	-	-	-	37643174	T	-	37643174	7	5	509	1	0	1	0	1	0	0	0	0	18113	1493	52	0	686	0	ZNF585A	19	37643174	Frame_Shift_Del	DEL	T	TCGA-BH-A0BW-01A-11D-A10Y-09	4715023	37643174	21485809	68	46140										
LGALS4	0	genome.wustl.edu	37	chr19	39299504	39299504	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tgcaacgtgttgaagaccacCttgtcccagccgtcaaaccg	9	14	1	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	39299504	39299504	C	A	SNP	LGALS4	ENST00000307751	human	ensembl	69_37n	-1	known	missense	c.219	p.K73N	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS4	HGNC	ENSG00000171747	66	0	0	127	47	26.86	-	-	-	A	39299504	C	A	39299504	3	1	509	1	0	0	0	0	1	0	0	0	8799	680	24	4	784	4	LGALS4	19	39299504	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	1656330	39299504	19829479	69	46141										
ZNF780B	0	genome.wustl.edu	37	chr19	40541342	40541342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aggcctttccacattctttaCattcaaagggtttcccacca	5	13	2	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	40541342	40541342	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	missense	c.1424	p.C475Y	0.931	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	430	1	0.23	163	78	32.37	-	-	-	T	40541342	C	T	40541342	3	4	509	1	0	0	0	0	1	0	0	0	18246	478	17	4	1081	4	ZNF780B	19	40541342	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	1241838	40541342	18587641	70	46142										
PEG3	0	genome.wustl.edu	37	chr19	57335971	57335971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tgtctagctcatacagatttGgggcccaggacttcttaggt	11	9	3	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	57335971	57335971	G	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.53	p.P18Q	0.540	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	160	0	0	112	44	28.21	-	-	-	T	57335971	G	T	57335971	3	4	509	1	0	0	0	0	1	0	0	0	11793	1348	47	4		4	PEG3	19	57335971	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	16794629	57335971	1793012	71	46143										
SEC23B	0	genome.wustl.edu	37	chr20	18507096	18507096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agggcctggcatggtggttgGagatgaattaaagattccta	14	5	0	3			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	20	18507096	18507096	G	C	SNP	SEC23B	ENST00000262544	human	ensembl	69_37n	1	known	missense	c.914	p.G305A	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310	192	0	0	133	42	24	-	-	-	C	18507096	G	C	18507096	3	2	509	1	0	0	0	0	1	0	0	0	14080	1174	41	2	940	2	SEC23B	20	18507096	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		18507096	44518424	72	46144										
CACNA1I	0	genome.wustl.edu	37	chr22	40066845	40066845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tactatgccacctattgtcaCacccggctgctcatccactc	5	17	2	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	40066845	40066845	C	G	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	missense	c.4443	p.H1481Q	0.759	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	51	0	0	109	33	23.24	-	-	-	G	40066845	C	G	40066845	3	3	509	1	0	0	0	0	1	0	0	0	2571	477	17	4	4527	4	CACNA1I	22	40066845	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09		40066845	11237721	73	46145										
PNPLA3	0	genome.wustl.edu	37	chr22	44340638	44340639	+	Frame_Shift_Del	DEL	TT	TT	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	agtgggtgacctcacaggtgTtcactcgagtgctgatgtgt							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	44340638	44340639	TT	-	DEL	PNPLA3	ENST00000216180	human	ensembl	69_37n	1	known	frame_shift_del	c.1180_1181	p.F394fs	0.000:0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	132	0	0	219	46	17.23	-	-	-	-	44340639	TT	-	44340638	7	5	509	1	0	1	0	1	0	0	0	0	12240	1725	60	0	1210	0	PNPLA3	22	44340638	Frame_Shift_Del	DEL	TT	TCGA-BH-A0BW-01A-11D-A10Y-09	4273793	44340638	6963928	74	46146	381	2								
PNPLA3	0	genome.wustl.edu	37	chr22	44340640	44340641	+	Frame_Shift_Ins	INS	-	-	A													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	gggtgacctcacaggtgttcINSactcgagtgctgatgtgtct							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	44340640	44340641	-	A	INS	PNPLA3	ENST00000216180	human	ensembl	69_37n	1	known	frame_shift_ins	c.1182_1183	p.T394fs	0.000:0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	130	0	0	223	48	17.71	-	-	-	A	44340641	-	A	44340640	7	5	509	1	0	1	1	0	0	0	0	0	12240	825	29	0	1212	0	PNPLA3	22	44340640	Frame_Shift_Ins	INS	-	TCGA-BH-A0BW-01A-11D-A10Y-09	2	44340640	6963926	75	46147	381	2								
RPS6KA3	0	genome.wustl.edu	37	chrX	20195139	20195139	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ctgtttgcaggatttcgcttGaaaagcattcgtaaaagact	9	7	0	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	20195139	20195139	G	C	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	missense	c.909	p.F303L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	237	0	0	80	14	14.89	-	-	-	C	20195139	G	C	20195139	3	2	509	1	0	0	0	0	1	0	0	0	13738	1281	45	2	1361	2	RPS6KA3	23	20195139	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09		20195139	135075421	76	46148										
RPGR	0	genome.wustl.edu	37	chrX	38145532	38145534	+	In_Frame_Del	DEL	TCC	TCC	-													0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	cttctccctccccttctcctTcctcttctccctccccttct							TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	38145532	38145534	TCC	-	DEL	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_del	c.2720_2718	p.E907in_frame_del	0.994:0.977:0.978	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	21	0	0	15	8	34.78	-	-	-	-	38145534	TCC	-	38145532	7	5	509	1	0	1	0	1	0	0	0	0	13634	1783	62	0	1301	0	RPGR	23	38145532	In_Frame_Del	DEL	TCC	TCGA-BH-A0BW-01A-11D-A10Y-09	17950393	38145532	117125028	77	46149										
NLGN3	0	genome.wustl.edu	37	chrX	70386913	70386913	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	tctgctctgtccagctgggcTgtgaactaccaaccagtgaa	10	12	2	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	70386913	70386913	T	G	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	silent	c.966	p.A322	0.995	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	42	0	0	62	15	19.48	-	-	-	G	70386913	T	G	70386913	2	3	509	1	0	0	0	0	0	0	0	1	10535	1567	55	5		5	NLGN3	23	70386913	Silent	SNP	T	TCGA-BH-A0BW-01A-11D-A10Y-09	32241381	70386913	84883647	78	46150										
TSC22D3	0	genome.wustl.edu	37	chrX	107018552	107018552	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ggttgttgttctccccgctgCtgcctcgctggagcccactc	11	16	1	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	107018552	107018552	C	G	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	missense	c.98	p.S33T	0.140	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	37	0	0	63	20	24.1	-	-	-	G	107018552	C	G	107018552	3	3	509	1	0	0	0	0	1	0	0	0	16705	797	28	4	642	4	TSC22D3	23	107018552	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	36631639	107018552	48252008	79	46151										
CAPN6	0	genome.wustl.edu	37	chrX	110496378	110496378	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aaaatgccagaaacgaaagtGaaatatcccagcgtattttt	7	7	0	2			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	110496378	110496378	G	A	SNP	CAPN6	ENST00000324068	human	ensembl	69_37n	-1	known	missense	c.364	p.H122Y	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_Ca-dep,superfamily_Calpain_domain_III,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_Ca-dep,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	297	0	0	152	39	20.42	-	-	-	A	110496378	G	A	110496378	3	1	509	1	0	0	0	0	1	0	0	0	2655	1290	45	2	1601	2	CAPN6	23	110496378	Missense_Mutation	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	3477826	110496378	44774182	80	46152										
DOCK11	0	genome.wustl.edu	37	chrX	117782984	117782984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	ggttttaaagtgctgcacatCgaagattagctcaaccagga	10	8	1	1			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	117782984	117782984	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.4475	p.S1492L	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	350	0	0	175	74	29.72	-	-	-	T	117782984	C	T	117782984	3	4	509	1	0	0	0	0	1	0	0	0	4721	893	31	1	4637	1	DOCK11	23	117782984	Missense_Mutation	SNP	C	TCGA-BH-A0BW-01A-11D-A10Y-09	7286606	117782984	37487576	81	46153										
PLXNB3	0	genome.wustl.edu	37	chrX	153032801	153032801	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	4	0.871886716160037	1.02573203194321	2.24378881987578	0.390224142587092	0.523809523809524	1	0	aataccccgggagtggcaacGgtggggctggtggtgccctt	17	10	0	0			TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	153032801	153032801	G	A	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	silent	c.588	p.T196	0.081	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	8	0	0	40	13	24.53	-	-	-	A	153032801	G	A	153032801	2	1	509	1	0	0	0	0	0	0	0	1	12199	1103	39	1		1	PLXNB3	23	153032801	Silent	SNP	G	TCGA-BH-A0BW-01A-11D-A10Y-09	35249817	153032801	2237759	82	46154										
CDK11B	0	genome.wustl.edu	37	chr1	1573246	1573246	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctttagagccacaatttcatCtgtgaagaaaatacagacgg	8	8	2	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	1573246	1573246	C	A	SNP	CDK11B	ENST00000407249	human	ensembl	69_37n	-1	known	splice_site	c.1352-1	e14-1	1.000	-	-	-	no_errors	CDK11B	HGNC	ENSG00000248333	578	0	0	339	78	18.71	-	-	-	A	1573246	C	A	1573246	5	1	510	1	0	0	0	0	0	0	1	0	3156	927	32	2	1038	2	CDK11B	1	1573246	Splice_Site	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		1573246	247677375	1	46155										
TMEM201	0	genome.wustl.edu	37	chr1	9656053	9656053	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgtccccactgcgagcagtaCaacggcttccaggaggtgtg	13	12	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	9656053	9656053	C	G	SNP	TMEM201	ENST00000340381	human	ensembl	69_37n	1	known	nonsense	c.219	p.Y73*	1.000	pfam_DUF2349	pfam_DUF2448,pfam_DUF2349	-	no_errors	TMEM201	HGNC	ENSG00000188807	153	0	0	66	20	23.26	-	-	-	G	9656053	C	G	9656053	4	3	510	1	0	0	0	0	0	1	0	0	16221	489	17	4	225	4	TMEM201	1	9656053	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	8082807	9656053	239594568	2	46156										
AHDC1	0	genome.wustl.edu	37	chr1	27874450	27874451	+	Frame_Shift_Ins	INS	-	-	G													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagtatgccttctgcaggccINSggcgtcaaacaccgtgggtg							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	27874450	27874451	-	G	INS	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4177_4176	p.G1392fs	1.000:0.017	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	59	0	0	19	6	24	-	-	-	G	27874451	-	G	27874450	7	5	510	1	0	1	1	0	0	0	0	0	412	652	23	0	638	0	AHDC1	1	27874450	Frame_Shift_Ins	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	18218397	27874450	221376171	3	46157										
CSMD2	0	genome.wustl.edu	37	chr1	33990553	33990553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgctgttggcaacttggaagCcagtcactctgagcatggct	12	10	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	33990553	33990553	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.10325	p.G3442D	0.996	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	479	0	0	301	80	21	-	-	-	T	33990553	C	T	33990553	3	4	510	1	0	0	0	0	1	0	0	0	3977	739	26	4	590	4	CSMD2	1	33990553	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	6116103	33990553	215260068	4	46158										
ZMYM6	0	genome.wustl.edu	37	chr1	35453751	35453751	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgcagccccatcggtacagaGaccaacacaatgtttccaat	7	13	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	35453751	35453751	G	C	SNP	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	missense	c.2932	p.L978V	0.997	superfamily_RNaseH-like_dom	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	35	0	0	29	10	25.64	-	-	-	C	35453751	G	C	35453751	3	2	510	1	0	0	0	0	1	0	0	0	17800	942	33	2	1049	2	ZMYM6	1	35453751	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	1463198	35453751	213796870	5	46159										
GNL2	0	genome.wustl.edu	37	chr1	38040001	38040001	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acaaagaaaggaatccggccCctctgccagtcattgaggac	10	12	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	38040001	38040001	C	A	SNP	GNL2	ENST00000373062	human	ensembl	69_37n	-1	known	missense	c.1359	p.R453S	1.000	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697	144	1	0.69	103	38	26.95	-	-	-	A	38040001	C	A	38040001	3	1	510	1	0	0	0	0	1	0	0	0	6588	622	22	4	856	4	GNL2	1	38040001	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2586250	38040001	211210620	6	46160										
SPATA1	0	genome.wustl.edu	37	chr1	85018771	85018772	+	RNA	INS	-	-	A													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgaaaactgaactggcacagINSaaaaaaaaaataatacatct							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	85018771	85018772	-	A	INS	SPATA1	ENST00000460286	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	18	0	0	13	3	18.75	-	-	-	A	85018772	-	A	85018771	6	5	510	0	1	1	1	0	0	0	0	0	15089	933	33	0		0	SPATA1	1	85018771	RNA	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	46978770	85018771	164231850	7	46161										
BRDT	0	genome.wustl.edu	37	chr1	92446610	92446610	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cataatacaatcaagagagcCttctctgagcaattccaatc	5	11	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	92446610	92446610	C	G	SNP	BRDT	ENST00000362005	human	ensembl	69_37n	1	known	missense	c.1625	p.P542R	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	160	0	0	202	83	29.12	-	-	-	G	92446610	C	G	92446610	3	3	510	1	0	0	0	0	1	0	0	0	1516	681	24	4	1659	4	BRDT	1	92446610	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	7427839	92446610	156804011	8	46162										
PALMD	0	genome.wustl.edu	37	chr1	100154988	100154988	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttcacccacttgtcaggaggAcgaggaagatgtcagatata	11	8	3	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	100154988	100154988	A	T	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	1	known	missense	c.1172	p.D391V	0.998	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	107	0	0	78	14	15.05	-	-	-	T	100154988	A	T	100154988	3	4	510	1	0	0	0	0	1	0	0	0	11484	275	10	5	1198	5	PALMD	1	100154988	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	7708378	100154988	149095633	9	46163										
MAN1A2	0	genome.wustl.edu	37	chr1	118003225	118003225	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttgacaggggacctgacttaCtacaaaaaggtttgttttct	9	7	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	118003225	118003225	C	G	SNP	MAN1A2	ENST00000356554	human	ensembl	69_37n	1	known	nonsense	c.1065	p.Y355*	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162	432	0	0	365	48	11.62	-	-	-	G	118003225	C	G	118003225	4	3	510	1	0	0	0	0	0	1	0	0	9282	576	20	4	1091	4	MAN1A2	1	118003225	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	17848237	118003225	131247396	10	46164										
SPAG17	0	genome.wustl.edu	37	chr1	118550690	118550690	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gtatgttccctgtggctttgCaataatagttgttccatctc	8	9	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	118550690	118550690	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.4564	p.A1522S	0.998	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	342	0	0	280	46	14.11	-	-	-	A	118550690	C	A	118550690	3	1	510	1	0	0	0	0	1	0	0	0	15070	710	25	4	2179	4	SPAG17	1	118550690	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	547465	118550690	130699931	11	46165										
FCGR1A	0	genome.wustl.edu	37	chr1	149755809	149755809	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cccatacagctggaaatccaCagaggtaattatgacttgga	9	9	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	149755809	149755809	C	G	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	missense	c.303	p.H101Q	0.652	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	272	0	0	214	57	21.03	-	-	-	G	149755809	C	G	149755809	3	3	510	1	0	0	0	0	1	0	0	0	5825	477	17	4	313	4	FCGR1A	1	149755809	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	31205119	149755809	99494812	12	46166										
FLG2	0	genome.wustl.edu	37	chr1	152328814	152328814	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aggactgacctgagccagacCcatgttgtccaaagccagat	10	12	0	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	152328814	152328814	C	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.1448	p.G483V	0.009	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	678	1	0.15	387	127	24.71	-	-	-	A	152328814	C	A	152328814	3	1	510	1	0	0	0	0	1	0	0	0	5969	623	22	4	5731	4	FLG2	1	152328814	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2573005	152328814	96921807	13	46167										
FCRL6	0	genome.wustl.edu	37	chr1	159785371	159785371	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgagatgcctgcagcccagtGaggtttcatccacggaggtg	14	10	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	159785371	159785371	G	A	SNP	FCRL6	ENST00000368106	human	ensembl	69_37n	1	known	missense	c.1225	p.E409K	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL6	HGNC	ENSG00000181036	415	0	0	500	61	10.85	-	-	-	A	159785371	G	A	159785371	3	1	510	1	0	0	0	0	1	0	0	0	5845	1291	45	2	1263	2	FCRL6	1	159785371	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7456557	159785371	89465250	14	46168										
UCK2	0	genome.wustl.edu	37	chr1	165865490	165865490	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tttgaagggatcctggccttCtactcccaggaggtacgaga	12	10	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	165865490	165865490	C	T	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.420	p.F140	1.000	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_PRK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	241	0	0	232	36	13.38	-	-	-	T	165865490	C	T	165865490	2	4	510	1	0	0	0	0	0	0	0	1	17021	912	32	2		2	UCK2	1	165865490	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	6080119	165865490	83385131	15	46169										
BLZF1	0	genome.wustl.edu	37	chr1	169351347	169351347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcaatggggaagagagcaaaCttactcccctagtgtacaac	10	10	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	169351347	169351347	C	G	SNP	BLZF1	ENST00000329281	human	ensembl	69_37n	1	known	missense	c.845	p.T282S	0.998	NULL	pfam_DUF1721_fun	-	no_errors	BLZF1	HGNC	ENSG00000117475	293	0	0	421	115	21.46	-	-	-	G	169351347	C	G	169351347	3	3	510	1	0	0	0	0	1	0	0	0	1458	565	20	4	863	4	BLZF1	1	169351347	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3485857	169351347	79899274	16	46170										
SELP	0	genome.wustl.edu	37	chr1	169581541	169581541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctaatgcaaatccctcttcaCaactgaagctgcagctagac	6	13	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	169581541	169581541	C	T	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.875	p.C292Y	0.880	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	310	0	0	291	43	12.87	-	-	-	T	169581541	C	T	169581541	3	4	510	1	0	0	0	0	1	0	0	0	14107	478	17	4	1661	4	SELP	1	169581541	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	230194	169581541	79669080	17	46171										
SELL	0	genome.wustl.edu	37	chr1	169672428	169672428	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gactaggatttgaccagattCcagatgattcacaaatggtt	9	7	1	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	169672428	169672428	C	G	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.959	p.G320A	0.992	pirsf_L-selectin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	286	0	0	339	101	22.95	-	-	-	G	169672428	C	G	169672428	3	3	510	1	0	0	0	0	1	0	0	0	14104	855	30	2	214	2	SELL	1	169672428	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	90887	169672428	79578193	18	46172										
CEP350	0	genome.wustl.edu	37	chr1	180000592	180000592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttgagcagactcttgatacaGatagcactttggaggatctt	10	7	2	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	180000592	180000592	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.3688	p.D1230H	0.945	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	60	0	0	87	13	13	-	-	-	C	180000592	G	C	180000592	3	2	510	1	0	0	0	0	1	0	0	0	3283	942	33	2	3742	2	CEP350	1	180000592	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	10328164	180000592	69250029	19	46173										
KIAA1614	0	genome.wustl.edu	37	chr1	180885366	180885366	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agtggagtggtcctgagccaCagctggataacggacacccc	13	12	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	180885366	180885366	C	G	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.127	p.Q43E	0.182	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	68	0	0	51	9	15	-	-	-	G	180885366	C	G	180885366	3	3	510	1	0	0	0	0	1	0	0	0	8300	479	17	4	133	4	KIAA1614	1	180885366	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	884774	180885366	68365255	20	46174										
HMCN1	0	genome.wustl.edu	37	chr1	186014823	186014823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acccatctttcatgtagttcCgccaaatattatgggagaag	8	9	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	186014823	186014823	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.6308	p.P2103L	1.000	smart_Ig_V-set_subgr	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	298	2	0.67	325	72	18.14	-	-	-	T	186014823	C	T	186014823	3	4	510	1	0	0	0	0	1	0	0	0	7271	652	23	1	6470	1	HMCN1	1	186014823	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	5129457	186014823	63235798	21	46175										
ZC3H11A	0	genome.wustl.edu	37	chr1	203821334	203821334	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggaggtgtctggcccttcctCatcccaaatgagcatgaaaa	10	11	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	203821334	203821334	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.2240	p.S747L	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	174	1	0.57	142	64	30.77	-	-	-	T	203821334	C	T	203821334	3	4	510	1	0	0	0	0	1	0	0	0	17656	838	29	2	2302	2	ZC3H11A	1	203821334	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	17806511	203821334	45429287	22	46176										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220345979	220345979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagcaacaaactttgtttacCtttcatcttgctcaggaggg	9	9	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	220345979	220345979	C	T	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.2416	p.V806M	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	291	1	0.34	260	74	22.16	-	-	-	T	220345979	C	T	220345979	3	4	510	1	0	0	0	0	1	0	0	0	13019	695	24	4	1821	4	RAB3GAP2	1	220345979	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	16524645	220345979	28904642	23	46177										
WNT3A	0	genome.wustl.edu	37	chr1	228246812	228246812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gacttcctcaaggacaagtaCgacagcgcctcggagatggt	12	11	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	228246812	228246812	C	T	SNP	WNT3A	ENST00000366753	human	ensembl	69_37n	1	known	silent	c.705	p.Y235	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342	131	0	0	86	39	31.2	-	-	-	T	228246812	C	T	228246812	2	4	510	1	0	0	0	0	0	0	0	1	17486	547	19	1		1	WNT3A	1	228246812	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	7900833	228246812	21003809	24	46178										
TRIM67	0	genome.wustl.edu	37	chr1	231334915	231334915	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagagggaacacaagttgaaGgtaggtacctgggggactga	17	5	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	231334915	231334915	G	A	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	silent	c.1263	p.K421	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	222	0	0	227	28	10.98	-	-	-	A	231334915	G	A	231334915	2	1	510	1	0	0	0	0	0	0	0	1	16636	1014	35	4		4	TRIM67	1	231334915	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3088103	231334915	17915706	25	46179										
RYR2	0	genome.wustl.edu	37	chr1	237693803	237693803	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aggtgaaaaaaatgaagctaCccaagaagtaagttgaatga	10	4	0	5			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	237693803	237693803	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2893	p.P965T	0.373	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	356	0	0	278	95	25.4	-	-	-	A	237693803	C	A	237693803	3	1	510	1	0	0	0	0	1	0	0	0	13855	507	18	4	2997	4	RYR2	1	237693803	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	6358888	237693803	11556818	26	46180										
OR2L2	0	genome.wustl.edu	37	chr1	248201729	248201729	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tcatctttttggacatccatCtccacacacctatgtatttc	3	13	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	1	248201729	248201729	C	A	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	1	known	missense	c.160	p.L54I	0.996	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	743	0	0	595	126	17.45	-	-	-	A	248201729	C	A	248201729	3	1	510	1	0	0	0	0	1	0	0	0	11080	913	32	2	162	2	OR2L2	1	248201729	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	10507926	248201729	1048892	27	46181										
LPIN1	0	genome.wustl.edu	37	chr2	11911547	11911547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccccatcctgtcagaaggagCttcgagaatggaatgccagc	11	12	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	11911547	11911547	C	T	SNP	LPIN1	ENST00000449576	human	ensembl	69_37n	1	known	missense	c.485	p.A162V	0.041	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	166	0	0	128	34	20.99	-	-	-	T	11911547	C	T	11911547	3	4	510	1	0	0	0	0	1	0	0	0	8984	797	28	4	348	4	LPIN1	2	11911547	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		11911547	231287826	28	46182										
APOB	0	genome.wustl.edu	37	chr2	21230517	21230517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	actgggactcagaaacagtgCatagttattcaggaagtcta	10	7	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	21230517	21230517	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.9223	p.A3075T	0.083	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	186	0	0	137	31	18.45	-	-	-	T	21230517	C	T	21230517	3	4	510	1	0	0	0	0	1	0	0	0	787	710	25	4	4484	4	APOB	2	21230517	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	9318970	21230517	221968856	29	46183										
APOB	0	genome.wustl.edu	37	chr2	21239435	21239435	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gattgttccgaggtcaacatCaaaatccggaatttggactt	9	8	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	21239435	21239435	C	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.3208	p.D1070H	0.977	pfam_Lipid_transpt_open_b-sht	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	339	0	0	249	61	19.61	-	-	-	G	21239435	C	G	21239435	3	3	510	1	0	0	0	0	1	0	0	0	787	826	29	2	10519	2	APOB	2	21239435	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	8918	21239435	221959938	30	46184										
KCNK3	0	genome.wustl.edu	37	chr2	26950777	26950777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcacgctgtgcatcggcgccGccgccttctcccactacgag	11	18	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	26950777	26950777	G	A	SNP	KCNK3	ENST00000302909	human	ensembl	69_37n	1	known	missense	c.526	p.A176T	0.991	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK1,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303	109	0	0	63	11	14.67	-	-	-	A	26950777	G	A	26950777	3	1	510	1	0	0	0	0	1	0	0	0	8121	1087	38	1	532	1	KCNK3	2	26950777	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	5711342	26950777	216248596	31	46185										
CCDC121	0	genome.wustl.edu	37	chr2	27851347	27851347	+	Frame_Shift_Del	DEL	G	G	-													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aggaatgagcgctagcatcaGgaacctgcgtctgcaactcg							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	27851347	27851347	G	-	DEL	CCDC121	ENST00000394775	human	ensembl	69_37n	-1	known	frame_shift_del	c.284	p.P95fs	0.002	NULL	NULL	-	no_errors	CCDC121	HGNC	ENSG00000176714	105	0	0	83	13	13	-	-	-	-	27851347	G	-	27851347	7	5	510	1	0	1	0	1	0	0	0	0	2782	1000	35	0	1046	0	CCDC121	2	27851347	Frame_Shift_Del	DEL	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	900570	27851347	215348026	32	46186										
BRE	0	genome.wustl.edu	37	chr2	28521317	28521317	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcccaaaaaaattatccgtaCagccccagatgggatggaaa	9	10	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	28521317	28521317	C	G	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	nonsense	c.1047	p.Y349*	1.000	NULL	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	341	0	0	283	63	18.16	-	-	-	G	28521317	C	G	28521317	4	3	510	1	0	0	0	0	0	1	0	0	1517	489	17	4	1085	4	BRE	2	28521317	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	669970	28521317	214678056	33	46187										
PRKD3	0	genome.wustl.edu	37	chr2	37501724	37501724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctgtccccattgttctcaccAacgaagtataccatagtatc	5	13	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	37501724	37501724	A	G	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	silent	c.1491	p.V497	0.995	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	319	0	0	173	103	37.05	-	-	-	G	37501724	A	G	37501724	2	3	510	1	0	0	0	0	0	0	0	1	12601	117	5	5		5	PRKD3	2	37501724	Silent	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	8980407	37501724	205697649	34	46188										
PLEKHH2	0	genome.wustl.edu	37	chr2	43937232	43937232	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccagagcagaagctcccaaaAacttgctcatcttccagtga	7	13	2	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	43937232	43937232	A	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.2070	p.K690N	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	338	1	0.29	234	94	28.57	-	-	-	T	43937232	A	T	43937232	3	4	510	1	0	0	0	0	1	0	0	0	12151	11	1	5	2112	5	PLEKHH2	2	43937232	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	6435508	43937232	199262141	35	46189										
PREPL	0	genome.wustl.edu	37	chr2	44559718	44559718	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taatattttgggggacgtatTggagagcaaagttgaaaggg	15	2	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	44559718	44559718	T	A	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	silent	c.1233	p.P411	1.000	pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	537	0	0	554	109	16.42	-	-	-	A	44559718	T	A	44559718	2	1	510	1	0	0	0	0	0	0	0	1	12556	1799	63	5		5	PREPL	2	44559718	Silent	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	622486	44559718	198639655	36	46190										
MSH2	0	genome.wustl.edu	37	chr2	47657032	47657032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	attgttaccgactctatcagGgtataaatcaactacctaat	5	9	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	47657032	47657032	G	A	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	missense	c.1228	p.G410S	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	174	0	0	202	29	12.55	-	-	-	A	47657032	G	A	47657032	3	1	510	1	0	0	0	0	1	0	0	0	9942	1232	43	4	1254	4	MSH2	2	47657032	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3097314	47657032	195542341	37	46191										
C2orf73	0	genome.wustl.edu	37	chr2	54562103	54562103	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taaattcattaacacaaatgCaagaacatacaatgaaccat	3	8	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	54562103	54562103	C	A	SNP	C2orf73	ENST00000398634	human	ensembl	69_37n	1	known	missense	c.176	p.A59E	0.994	NULL	NULL	-	no_errors	C2orf73	HGNC	ENSG00000177994	217	0	0	301	42	12.21	-	-	-	A	54562103	C	A	54562103	3	1	510	1	0	0	0	0	1	0	0	0	2212	710	25	4	182	4	C2orf73	2	54562103	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	6905071	54562103	188637270	38	46192										
PLEK	0	genome.wustl.edu	37	chr2	68621250	68621250	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cttctttaggcagaagatccCctgggagcaattcacttgag	10	10	2	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	68621250	68621250	C	T	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	1	known	silent	c.858	p.P286	0.820	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	244	1	0.41	232	39	14.39	-	-	-	T	68621250	C	T	68621250	2	4	510	1	0	0	0	0	0	0	0	1	12127	610	22	4		4	PLEK	2	68621250	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	14059147	68621250	174578123	39	46193										
MPHOSPH10	0	genome.wustl.edu	37	chr2	71360505	71360505	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagagcaaggtgcaaaacaaAggacagggaaaaccaagaga	12	7	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	71360505	71360505	A	C	SNP	MPHOSPH10	ENST00000244230	human	ensembl	69_37n	1	known	missense	c.567	p.K189N	0.000	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383	223	0	0	215	94	30.42	-	-	-	C	71360505	A	C	71360505	3	2	510	1	0	0	0	0	1	0	0	0	9797	69	3	5	573	5	MPHOSPH10	2	71360505	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	2739255	71360505	171838868	40	46194										
TMEM131	0	genome.wustl.edu	37	chr2	98409038	98409038	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gggggcgggagacagcctttCaggctgcggctcctggggct	19	11	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	98409038	98409038	C	A	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	nonsense	c.3955	p.E1319*	0.036	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	215	0	0	156	26	14.29	-	-	-	A	98409038	C	A	98409038	4	1	510	1	0	0	0	0	0	1	0	0	16139	835	29	2	1740	2	TMEM131	2	98409038	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	27048533	98409038	144790335	41	46195										
CNGA3	0	genome.wustl.edu	37	chr2	98994171	98994171	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcccactcgtcaagtgaggaGacatcgtcagtgctgcagcc	12	13	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	98994171	98994171	G	C	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	missense	c.123	p.E41D	0.738	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	66	0	0	45	19	29.69	-	-	-	C	98994171	G	C	98994171	3	2	510	1	0	0	0	0	1	0	0	0	3628	933	33	2	129	2	CNGA3	2	98994171	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	585133	98994171	144205202	42	46196										
GALNT3	0	genome.wustl.edu	37	chr2	166611534	166611534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atttttacactgaaggcggtGttttatttcaaatctttttg	7	5	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	166611534	166611534	G	A	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	missense	c.1432	p.H478Y	0.993	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	146	1	0.68	87	36	29.27	-	-	-	A	166611534	G	A	166611534	3	1	510	1	0	0	0	0	1	0	0	0	6264	1377	48	4	485	4	GALNT3	2	166611534	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	67617363	166611534	76587839	43	46197										
FASTKD1	0	genome.wustl.edu	37	chr2	170394566	170394566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cggtcatgaaaccatggaatCtgaaactcagggcattccaa	9	10	3	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	170394566	170394566	C	G	SNP	FASTKD1	ENST00000453153	human	ensembl	69_37n	-1	known	missense	c.2031	p.Q677H	0.998	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399	155	0	0	226	28	10.98	-	-	-	G	170394566	C	G	170394566	3	3	510	1	0	0	0	0	1	0	0	0	5731	912	32	2	532	2	FASTKD1	2	170394566	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3783032	170394566	72804807	44	46198										
TTN	0	genome.wustl.edu	37	chr2	179645892	179645892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagaagtttctccatgcttaTtgcgaacaacaatagtgtat	7	8	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	179645892	179645892	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.3479	p.N1160S	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	658	0	0	385	71	15.54	-	-	-	C	179645892	T	C	179645892	3	2	510	1	0	0	0	0	1	0	0	0	16832	1493	52	5	107877	5	TTN	2	179645892	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	9251326	179645892	63553481	45	46199										
COQ10B	0	genome.wustl.edu	37	chr2	198334804	198334804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tttgttgtaggcatcttgtaCtgatgggagacttttcaatc	10	6	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	198334804	198334804	C	G	SNP	COQ10B	ENST00000263960	human	ensembl	69_37n	1	known	missense	c.458	p.T153S	1.000	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10B	HGNC	ENSG00000115520	424	0	0	465	118	20.24	-	-	-	G	198334804	C	G	198334804	3	3	510	1	0	0	0	0	1	0	0	0	3774	565	20	4	472	4	COQ10B	2	198334804	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	18688912	198334804	44864569	46	46200										
SP100	0	genome.wustl.edu	37	chr2	231331031	231331031	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tacagagcccatggatttcaGaaaattatctacattcagag	7	8	3	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	231331031	231331031	G	A	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	missense	c.1157	p.R386K	0.002	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	78	0	0	119	22	15.6	-	-	-	A	231331031	G	A	231331031	3	1	510	1	0	0	0	0	1	0	0	0	15049	942	33	2	1203	2	SP100	2	231331031	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	32996227	231331031	11868342	47	46201										
ANKMY1	0	genome.wustl.edu	37	chr2	241463462	241463462	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcacacacacacgttggactCaaatttcgtctcagcactgc	7	14	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	2	241463462	241463462	C	A	SNP	ANKMY1	ENST00000272972	human	ensembl	69_37n	-1	known	nonsense	c.1405	p.E469*	0.906	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504	143	0	0	72	20	21.74	-	-	-	A	241463462	C	A	241463462	4	1	510	1	0	0	0	0	0	1	0	0	634	835	29	2	1464	2	ANKMY1	2	241463462	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	10132431	241463462	1735911	48	46202										
ITGA9	0	genome.wustl.edu	37	chr3	37778446	37778446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acctgtctggggaagaggaaGttctcagcttcattgttact	11	8	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	37778446	37778446	G	A	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	missense	c.2206	p.V736I	0.003	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	434	0	0	329	65	16.5	-	-	-	A	37778446	G	A	37778446	3	1	510	1	0	0	0	0	1	0	0	0	7937	1029	36	4	2284	4	ITGA9	3	37778446	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		37778446	160243984	49	46203										
FYCO1	0	genome.wustl.edu	37	chr3	46008278	46008278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctgcagtgccccttcacgctCcgagcattgcagcagctcct	9	17	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	46008278	46008278	C	G	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.2548	p.E850Q	0.949	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	177	0	0	117	18	13.33	-	-	-	G	46008278	C	G	46008278	3	3	510	1	0	0	0	0	1	0	0	0	6174	864	30	2	1932	2	FYCO1	3	46008278	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	8229832	46008278	152014152	50	46204										
LAMB2	0	genome.wustl.edu	37	chr3	49166019	49166019	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tctgcccattgctcagggacCtgggaaaacgggatgatgga	14	9	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	49166019	49166019	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	splice_site	c.1891-1	e15-1	1.000	-	-	-	no_errors	LAMB2	HGNC	ENSG00000172037	134	0	0	38	18	32.14	-	-	-	T	49166019	C	T	49166019	5	4	510	1	0	0	0	0	0	0	1	0	8665	695	24	4	3578	4	LAMB2	3	49166019	Splice_Site	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3157741	49166019	148856411	51	46205										
HEG1	0	genome.wustl.edu	37	chr3	124731512	124731512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggtgactgtgtgctgctctGaacagcaaaggtggcagatt	14	7	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	124731512	124731512	G	A	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	nonsense	c.2911	p.Q971*	0.007	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	446	1	0.22	250	60	19.35	-	-	-	A	124731512	G	A	124731512	4	1	510	1	0	0	0	0	0	1	0	0	7095	1299	45	2	1282	2	HEG1	3	124731512	Nonsense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	75565493	124731512	73290918	52	46206										
PIK3R4	0	genome.wustl.edu	37	chr3	130463374	130463374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tcttcaactctcctcttgttCtctgattgctatttaagtct	4	11	6	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	130463374	130463374	C	G	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.689	p.R230T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	261	0	0	193	38	16.45	-	-	-	G	130463374	C	G	130463374	3	3	510	1	0	0	0	0	1	0	0	0	11995	913	32	2	3463	2	PIK3R4	3	130463374	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	5731862	130463374	67559056	53	46207										
CDV3	0	genome.wustl.edu	37	chr3	133306840	133306840	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttaaacttcagctagacaacCaatatgctgtgcttgaaaat	6	8	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	133306840	133306840	C	T	SNP	CDV3	ENST00000264993	human	ensembl	69_37n	1	known	nonsense	c.727	p.Q243*	1.000	NULL	NULL	-	no_errors	CDV3	HGNC	ENSG00000091527	157	0	0	133	21	13.55	-	-	-	T	133306840	C	T	133306840	4	4	510	1	0	0	0	0	0	1	0	0	3210	595	21	4	765	4	CDV3	3	133306840	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2843466	133306840	64715590	54	46208										
LEKR1	0	genome.wustl.edu	37	chr3	156547155	156547155	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccatgcatgcgttgcctgaaGaaatccaaaaggtatgatat	9	8	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	3	156547155	156547155	G	C	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	missense	c.37	p.E13Q	1.000	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	336	0	0	258	50	16.18	-	-	-	C	156547155	G	C	156547155	3	2	510	1	0	0	0	0	1	0	0	0	8771	943	33	2	39	2	LEKR1	3	156547155	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	23240315	156547155	41475275	55	46209										
CPEB2	0	genome.wustl.edu	37	chr4	15054069	15054069	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctctttccaatagatgatggCttgcttgatgatggtcacag	10	8	2	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	4	15054069	15054069	C	G	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	silent	c.2232	p.G744	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	701	0	0	681	95	12.23	-	-	-	G	15054069	C	G	15054069	2	3	510	1	0	0	0	0	0	0	0	1	3831	784	28	4		4	CPEB2	4	15054069	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		15054069	176100207	56	46210										
WDFY3	0	genome.wustl.edu	37	chr4	85672736	85672736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agtcaaaaacgaactttttaGccgggtgattggtcagatat	10	6	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	4	85672736	85672736	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.5873	p.A1958V	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	316	0	0	201	52	20.55	-	-	-	A	85672736	G	A	85672736	3	1	510	1	0	0	0	0	1	0	0	0	17367	971	34	4	4839	4	WDFY3	4	85672736	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	70618667	85672736	105481540	57	46211										
ANXA5	0	genome.wustl.edu	37	chr4	122590856	122590856	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaaaccatgactctgatgagGgtatgatcatctgtcccagc	10	10	3	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	4	122590856	122590856	G	C	SNP	ANXA5	ENST00000296511	human	ensembl	69_37n	-1	known	silent	c.804	p.T268	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinV,prints_AnnexinIV	-	no_errors	ANXA5	HGNC	ENSG00000164111	137	0	0	146	24	14.12	-	-	-	C	122590856	G	C	122590856	2	2	510	1	0	0	0	0	0	0	0	1	720	1219	43	4		4	ANXA5	4	122590856	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	36918120	122590856	68563420	58	46212										
LSM6	0	genome.wustl.edu	37	chr4	147104112	147104112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acccctagtgacttcttaaaGcaaatcatcggacgaccagt	7	12	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	4	147104112	147104112	G	A	SNP	LSM6	ENST00000296581	human	ensembl	69_37n	1	known	silent	c.39	p.K13	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM6	HGNC	ENSG00000164167	248	0	0	221	38	14.67	-	-	-	A	147104112	G	A	147104112	2	1	510	1	0	0	0	0	0	0	0	1	9126	962	34	4		4	LSM6	4	147104112	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	24513256	147104112	44050164	59	46213										
TRIM2	0	genome.wustl.edu	37	chr4	154243810	154243810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tttcaaacagacaaaaattgGatcaggaaagctgatgggac	10	6	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	4	154243810	154243810	G	T	SNP	TRIM2	ENST00000338700	human	ensembl	69_37n	1	known	missense	c.1793	p.G598V	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654	147	0	0	111	37	24.83	-	-	-	T	154243810	G	T	154243810	3	4	510	1	0	0	0	0	1	0	0	0	16590	1174	41	2	1827	2	TRIM2	4	154243810	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7139698	154243810	36910466	60	46214										
SLC12A7	0	genome.wustl.edu	37	chr5	1073784	1073784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcctccatgtgcttgtccagGtacgtcccctccagcaccga	9	17	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	1073784	1073784	G	A	SNP	SLC12A7	ENST00000513223	human	ensembl	69_37n	-1	putative	missense	c.277	p.P93S	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	SLC12A7	HGNC	ENSG00000113504	50	0	0	21	7	25	-	-	-	A	1073784	G	A	1073784	3	1	510	1	0	0	0	0	1	0	0	0	14477	1256	44	4	1078	4	SLC12A7	5	1073784	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		1073784	179841476	61	46215										
DMGDH	0	genome.wustl.edu	37	chr5	78338282	78338282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atgattcgatctagatcagaCtcaaagagttcctttccaaa	6	9	3	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	78338282	78338282	C	A	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	missense	c.1017	p.E339D	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	229	0	0	157	31	16.49	-	-	-	A	78338282	C	A	78338282	3	1	510	1	0	0	0	0	1	0	0	0	4617	564	20	4	1623	4	DMGDH	5	78338282	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	77264498	78338282	102576978	62	46216										
KIF3A	0	genome.wustl.edu	37	chr5	132038596	132038596	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cctctttttcctcaagttctCtgcgaagttgctctgctctt	6	13	5	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	132038596	132038596	C	A	SNP	KIF3A	ENST00000378735	human	ensembl	69_37n	-1	known	missense	c.1556	p.R519I	0.997	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	564	0	0	431	84	16.31	-	-	-	A	132038596	C	A	132038596	3	1	510	1	0	0	0	0	1	0	0	0	8352	913	32	2	580	2	KIF3A	5	132038596	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	53700314	132038596	48876664	63	46217										
ZCCHC10	0	genome.wustl.edu	37	chr5	132335893	132335893	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acacgagggggaaaaaagctCctgttaatagagtgattata	11	5	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	132335893	132335893	C	T	SNP	ZCCHC10	ENST00000513541	human	ensembl	69_37n	-1	putative	silent	c.270	p.R90	0.529	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC10	HGNC	ENSG00000155329	433	0	0	329	66	16.71	-	-	-	T	132335893	C	T	132335893	2	4	510	1	0	0	0	0	0	0	0	1	17675	870	30	2		2	ZCCHC10	5	132335893	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	297297	132335893	48579367	64	46218										
FSTL4	0	genome.wustl.edu	37	chr5	132535018	132535018	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atgcccaccttccccgtggaCagctccaggaacagcaggtc	10	16	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	132535018	132535018	C	T	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	silent	c.2298	p.L766	0.996	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	244	2	0.81	138	34	19.77	-	-	-	T	132535018	C	T	132535018	2	4	510	1	0	0	0	0	0	0	0	1	6128	465	17	4		4	FSTL4	5	132535018	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	199125	132535018	48380242	65	46219										
TGFBI	0	genome.wustl.edu	37	chr5	135388753	135388753	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atcatctccaataaagacatCctagccaccaacggggtgat	7	12	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	135388753	135388753	C	G	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.1071	p.I357M	0.166	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	152	0	0	109	22	16.67	-	-	-	G	135388753	C	G	135388753	3	3	510	1	0	0	0	0	1	0	0	0	15915	845	30	2	1101	2	TGFBI	5	135388753	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2853735	135388753	45526507	66	46220										
PCDHB3	0	genome.wustl.edu	37	chr5	140480788	140480788	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacgtactcactcgcagtcgTagggacggaaggaagtaccc	12	12	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	140480788	140480788	T	C	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	silent	c.555	p.R185	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	118	0	0	120	21	14.79	-	-	-	C	140480788	T	C	140480788	2	2	510	1	0	0	0	0	0	0	0	1	11616	1625	57	5		5	PCDHB3	5	140480788	Silent	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	5092035	140480788	40434472	67	46221										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789181	140789181	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	caacccgccaggagcctccaTtgcgcaagtgagcgcctctg	11	16	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	140789181	140789181	T	G	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.1412	p.I471S	0.900	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	94	0	0	52	9	14.75	-	-	-	G	140789181	T	G	140789181	3	3	510	1	0	0	0	0	1	0	0	0	11640	1493	52	5	1414	5	PCDHGB6	5	140789181	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	308393	140789181	40126079	68	46222										
PCDHGC4	0	genome.wustl.edu	37	chr5	140867095	140867096	+	In_Frame_Ins	INS	-	-	ATG													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccactcggagtgatagcttcINSatgatggtgaagtcacccag							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	140867095	140867096	-	ATG	INS	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	in_frame_ins	c.2355_2356	p.787in_frame_insM	1.000:1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	166	0	0	68	14	17.07	-	-	-	ATG	140867096	-	ATG	140867095	7	5	510	1	0	1	1	0	0	0	0	0	11643	825	29	0	2357	0	PCDHGC4	5	140867095	In_Frame_Ins	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	77914	140867095	40048165	69	46223										
SLIT3	0	genome.wustl.edu	37	chr5	168199824	168199824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgctcttgatctggctgatgCgcttgttggcgagtcggcgc	15	10	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	168199824	168199824	C	T	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	missense	c.1421	p.R474H	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	123	0	0	59	10	14.29	-	-	-	T	168199824	C	T	168199824	3	4	510	1	0	0	0	0	1	0	0	0	14830	768	27	1	3242	1	SLIT3	5	168199824	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	27332729	168199824	12715436	70	46224										
HRH2	0	genome.wustl.edu	37	chr5	175110861	175110861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	actaccgcatcttcaaggtcGcccgggatcaggccaagagg	12	13	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	5	175110861	175110861	G	A	SNP	HRH2	ENST00000377291	human	ensembl	69_37n	1	known	missense	c.625	p.A209T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H2_recept,prints_7TM_GPCR_Rhodpsn,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH2	HGNC	ENSG00000113749	158	1	0.62	181	30	14.22	-	-	-	A	175110861	G	A	175110861	3	1	510	1	0	0	0	0	1	0	0	0	7407	1087	38	1	627	1	HRH2	5	175110861	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	6911037	175110861	5804399	71	46225										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123825	26123825	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcttggccagctctccgggaAgcagcaggcgcacggccgtc	15	15	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	26123825	26123825	A	G	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.308	p.L103P	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	380	0	0	289	43	12.87	-	-	-	G	26123825	A	G	26123825	3	3	510	1	0	0	0	0	1	0	0	0	7193	72	3	5	76	5	HIST1H2BC	6	26123825	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09		26123825	144991242	72	46226										
HLA-A	0	genome.wustl.edu	37	chr6	29910336	29910336	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccccagacgccgaggatggcCgtcatggcgccccgaaccct	12	18	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	29910336	29910336	C	T	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	silent	c.6	p.A2	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	40	0	0	29	7	18.92	-	-	-	T	29910336	C	T	29910336	2	4	510	1	0	0	0	0	0	0	0	1	7246	639	23	1		1	HLA-A	6	29910336	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3786511	29910336	141204731	73	46227										
WDR46	0	genome.wustl.edu	37	chr6	33248475	33248475	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaccagcatgctggtgatgcCcccagtgtgccccaccccca	10	18	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	33248475	33248475	C	G	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	missense	c.1405	p.G469R	1.000	pfam_BING4_C_dom,superfamily_WD40_repeat_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	148	0	0	119	26	17.45	-	-	-	G	33248475	C	G	33248475	3	3	510	1	0	0	0	0	1	0	0	0	17396	623	22	4	447	4	WDR46	6	33248475	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3338139	33248475	137866592	74	46228										
KIFC1	0	genome.wustl.edu	37	chr6	33371093	33371093	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctcccatctcctgggcagctCaaaaagtttccaagaagaca	7	13	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	33371093	33371093	C	G	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.253	p.Q85E	0.998	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	199	0	0	243	34	12.27	-	-	-	G	33371093	C	G	33371093	3	3	510	1	0	0	0	0	1	0	0	0	8364	827	29	2	267	2	KIFC1	6	33371093	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	122618	33371093	137743974	75	46229										
UBR2	0	genome.wustl.edu	37	chr6	42652568	42652568	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aacaaattaataaaccttccAgaggattacagcagcctcat	5	10	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	42652568	42652568	A	G	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	silent	c.4812	p.P1604	0.186	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	129	0	0	143	74	33.94	-	-	-	G	42652568	A	G	42652568	2	3	510	1	0	0	0	0	0	0	0	1	16999	175	7	5		5	UBR2	6	42652568	Silent	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	9281475	42652568	128462499	76	46230										
GSTA2	0	genome.wustl.edu	37	chr6	52616434	52616434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctcttccacgtagtagagaaGttccaccaggtgaatgtcag	10	10	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	52616434	52616434	G	A	SNP	GSTA2	ENST00000493422	human	ensembl	69_37n	-1	known	missense	c.487	p.L163F	0.906	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA2	HGNC	ENSG00000244067	492	0	0	455	77	14.42	-	-	-	A	52616434	G	A	52616434	3	1	510	1	0	0	0	0	1	0	0	0	6882	1029	36	4	189	4	GSTA2	6	52616434	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	9963866	52616434	118498633	77	46231										
MRPL18	0	genome.wustl.edu	37	chr6	160212096	160212096	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccccggaacctggagcttttAtctgtagccaggaaagagcg	12	11	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	6	160212096	160212096	A	T	SNP	MRPL18	ENST00000367034	human	ensembl	69_37n	1	known	missense	c.177	p.L59F	0.031	NULL	pfam_Ribosomal_L18/L5	-	no_errors	MRPL18	HGNC	ENSG00000112110	104	0	0	100	16	13.79	-	-	-	T	160212096	A	T	160212096	3	4	510	1	0	0	0	0	1	0	0	0	9855	446	16	5	183	5	MRPL18	6	160212096	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	107595662	160212096	10902971	78	46232										
INTS1	0	genome.wustl.edu	37	chr7	1527563	1527563	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tccgtccgggtctcctcatcCgtcagggtgcacggtgggta	14	13	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	1527563	1527563	C	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.2733	p.T911	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	198	0	0	146	19	11.45	-	-	-	T	1527563	C	T	1527563	2	4	510	1	0	0	0	0	0	0	0	1	7829	639	23	1		1	INTS1	7	1527563	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		1527563	157611100	79	46233										
LSM5	0	genome.wustl.edu	37	chr7	32528913	32528913	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acaatttccttatcactcttCatcacgatgtgaattcttga	4	10	5	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	32528913	32528913	C	T	SNP	LSM5	ENST00000450169	human	ensembl	69_37n	-1	known	missense	c.90	p.M30I	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM5	HGNC	ENSG00000106355	183	0	0	252	44	14.81	-	-	-	T	32528913	C	T	32528913	3	4	510	1	0	0	0	0	1	0	0	0	9125	826	29	2	201	2	LSM5	7	32528913	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	31001350	32528913	126609750	80	46234										
OGDH	0	genome.wustl.edu	37	chr7	44737330	44737330	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgcccgggacaagccaagtgGgtgcggcagaatggcatcgt	16	10	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	44737330	44737330	G	T	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.2307	p.W769C	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	305	0	0	136	24	15	-	-	-	T	44737330	G	T	44737330	3	4	510	1	0	0	0	0	1	0	0	0	10912	1241	43	4	2542	4	OGDH	7	44737330	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	12208417	44737330	114401333	81	46235										
CACNA2D1	0	genome.wustl.edu	37	chr7	81598259	81598259	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctacagctttgcttaccataAtgcccgattcataggcacca	6	13	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	81598259	81598259	A	G	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.2375	p.I792T	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	134	0	0	114	71	38.38	-	-	-	G	81598259	A	G	81598259	3	3	510	1	0	0	0	0	1	0	0	0	2573	101	4	5	980	5	CACNA2D1	7	81598259	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	36860929	81598259	77540404	82	46236										
COL1A2	0	genome.wustl.edu	37	chr7	94043009	94043009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taaatatttttagggtgctcCaggtcctgatggaaacaatg	10	6	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	94043009	94043009	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.1565	p.P522L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	271	0	0	248	45	15.36	-	-	-	T	94043009	C	T	94043009	3	4	510	1	0	0	0	0	1	0	0	0	3708	594	21	4	1671	4	COL1A2	7	94043009	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	12444750	94043009	65095654	83	46237										
PDIA4	0	genome.wustl.edu	37	chr7	148718210	148718210	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctcctcctcctcctcttcatCctcaatggcattttctctgt	3	17	4	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	148718210	148718210	C	T	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.118	p.D40N	1.000	pirsf_Protein_diS-isomerase_A4	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	529	0	0	427	74	14.77	-	-	-	T	148718210	C	T	148718210	3	4	510	1	0	0	0	0	1	0	0	0	11743	855	30	2	1855	2	PDIA4	7	148718210	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	54675201	148718210	10420453	84	46238										
SLC4A2	0	genome.wustl.edu	37	chr7	150769218	150769218	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atgagaccttctacaagctgGtgaaggtgggcaggcccctg	14	10	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	7	150769218	150769218	G	C	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.2530	p.V844L	0.100	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	294	0	0	215	33	13.31	-	-	-	C	150769218	G	C	150769218	3	2	510	1	0	0	0	0	1	0	0	0	14743	1261	44	4	2588	4	SLC4A2	7	150769218	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	2051008	150769218	8369445	85	46239										
MYOM2	0	genome.wustl.edu	37	chr8	2026951	2026951	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgaacagtgcgggcatcagcCgaccctccagggtctctgat	12	13	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	2026951	2026951	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.1399	p.R467G	0.982	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	100	0	0	123	19	13.19	-	-	-	G	2026951	C	G	2026951	3	3	510	1	0	0	0	0	1	0	0	0	10164	644	23	3	1441	3	MYOM2	8	2026951	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		2026951	144337071	86	46240										
NKX3-1	0	genome.wustl.edu	37	chr8	23538848	23538848	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcctcctctttcagggccggCaaagaggagtgcttctccaa	11	13	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	23538848	23538848	C	G	SNP	NKX3-1	ENST00000380871	human	ensembl	69_37n	-1	known	missense	c.591	p.L197F	0.967	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX3-1	HGNC	ENSG00000167034	222	0	0	169	27	13.78	-	-	-	G	23538848	C	G	23538848	3	3	510	1	0	0	0	0	1	0	0	0	10527	709	25	4	117	4	NKX3-1	8	23538848	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	21511897	23538848	122825174	87	46241										
TEX15	0	genome.wustl.edu	37	chr8	30705392	30705392	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgtcttttggtttcgggaaaGcttcagttataatgctagca	10	6	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	30705392	30705392	G	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1142	p.A381D	0.125	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	492	2	0.4	424	112	20.9	-	-	-	T	30705392	G	T	30705392	3	4	510	1	0	0	0	0	1	0	0	0	15874	971	34	4	7243	4	TEX15	8	30705392	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7166544	30705392	115658630	88	46242										
IKBKB	0	genome.wustl.edu	37	chr8	42171889	42171889	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggacattgttgttagcgaaGacttgaatggaacggtgaag	14	4	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	42171889	42171889	G	T	SNP	IKBKB	ENST00000520810	human	ensembl	69_37n	1	known	missense	c.742	p.D248Y	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	673	0	0	661	99	13.01	-	-	-	T	42171889	G	T	42171889	3	4	510	1	0	0	0	0	1	0	0	0	7665	942	33	2	772	2	IKBKB	8	42171889	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	11466497	42171889	104192133	89	46243										
MTFR1	0	genome.wustl.edu	37	chr8	66619371	66619371	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgatctgattaaagaacgaaGagagaaaagagccaatgctg	11	5	1	6			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	66619371	66619371	G	C	SNP	MTFR1	ENST00000262146	human	ensembl	69_37n	1	known	missense	c.644	p.R215T	0.971	pfam_Mtfr1	pfam_Mtfr1	-	no_errors	MTFR1	HGNC	ENSG00000066855	94	0	0	121	25	17.12	-	-	-	C	66619371	G	C	66619371	3	2	510	1	0	0	0	0	1	0	0	0	9997	942	33	2	662	2	MTFR1	8	66619371	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	24447482	66619371	79744651	90	46244										
MYBL1	0	genome.wustl.edu	37	chr8	67484779	67484779	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cgcattcttaaaaggagtagGagttcttggtgtggtaccca	12	7	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	67484779	67484779	G	C	SNP	MYBL1	ENST00000522677	human	ensembl	69_37n	-1	known	missense	c.1666	p.P556A	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697	276	0	0	593	81	12.02	-	-	-	C	67484779	G	C	67484779	3	2	510	1	0	0	0	0	1	0	0	0	10081	1174	41	2	612	2	MYBL1	8	67484779	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	865408	67484779	78879243	91	46245										
TG	0	genome.wustl.edu	37	chr8	134034236	134034236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgtttctccaatacccacagGcccctaacgcgtctgtgctg	8	15	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	8	134034236	134034236	G	A	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.6877	p.A2293T	0.957	pfam_CarbesteraseB,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	240	0	0	313	45	12.53	-	-	-	A	134034236	G	A	134034236	3	1	510	1	0	0	0	0	1	0	0	0	15908	1217	42	4	7035	4	TG	8	134034236	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	66549457	134034236	12329786	92	46246										
IFNB1	0	genome.wustl.edu	37	chr9	21077514	21077514	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttcttccaggactgtcttcaGatggtttatctgatgataga	9	7	4	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	21077514	21077514	G	A	SNP	IFNB1	ENST00000380232	human	ensembl	69_37n	-1	known	silent	c.355	p.L119	0.966	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNB1	HGNC	ENSG00000171855	410	0	0	242	36	12.95	-	-	-	A	21077514	G	A	21077514	2	1	510	1	0	0	0	0	0	0	0	1	7600	933	33	2		2	IFNB1	9	21077514	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		21077514	120135917	93	46247										
SIT1	0	genome.wustl.edu	37	chr9	35650368	35650368	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccctacctgtctgtagataaTgcaggttcccatacagcggg	10	12	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	35650368	35650368	T	A	SNP	SIT1	ENST00000259608	human	ensembl	69_37n	-1	known	missense	c.281	p.H94L	0.995	NULL	NULL	-	no_errors	SIT1	HGNC	ENSG00000137078	201	0	0	121	62	33.7	-	-	-	A	35650368	T	A	35650368	3	1	510	1	0	0	0	0	1	0	0	0	14433	1464	51	5	321	5	SIT1	9	35650368	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	14572854	35650368	105563063	94	46248										
OR13J1	0	genome.wustl.edu	37	chr9	35869718	35869718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacctggcggccgagggcacCctcaggatggtggccaggat	16	13	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	35869718	35869718	C	T	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	silent	c.681	p.R227	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	123	0	0	80	36	31.03	-	-	-	T	35869718	C	T	35869718	2	4	510	1	0	0	0	0	0	0	0	1	11017	622	22	4		4	OR13J1	9	35869718	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	219350	35869718	105343713	95	46249										
GABBR2	0	genome.wustl.edu	37	chr9	101470750	101470750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taggggcgcaggagtgactcGttgcggatctgctcgatggc	17	9	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	101470750	101470750	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	silent	c.270	p.N90	0.999	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	49	0	0	32	6	15.79	-	-	-	A	101470750	G	A	101470750	2	1	510	1	0	0	0	0	0	0	0	1	6205	1136	40	1		1	GABBR2	9	101470750	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	65601032	101470750	39742681	96	46250										
TLR4	0	genome.wustl.edu	37	chr9	120475509	120475509	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	caaaggtgggaatgctttttCagaagttgatctaccaagcc	10	8	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	120475509	120475509	C	A	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	nonsense	c.1103	p.S368*	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	126	0	0	117	15	11.36	-	-	-	A	120475509	C	A	120475509	4	1	510	1	0	0	0	0	0	1	0	0	16048	838	29	2	1113	2	TLR4	9	120475509	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	19004759	120475509	20737922	97	46251										
TLR4	0	genome.wustl.edu	37	chr9	120476776	120476776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagctgtaccgccttctcagCaggaacacttacctggagtg	11	12	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	120476776	120476776	C	A	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.2370	p.S790R	0.614	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	133	0	0	83	21	20.19	-	-	-	A	120476776	C	A	120476776	3	1	510	1	0	0	0	0	1	0	0	0	16048	709	25	4	2380	4	TLR4	9	120476776	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	1267	120476776	20736655	98	46252										
DBC1	0	genome.wustl.edu	37	chr9	122000956	122000956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaaggtgcagtttgctctccGtgctttgcagaaggacggaa	14	8	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	122000956	122000956	G	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.662	p.T221M	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	214	0	0	173	34	16.43	-	-	-	A	122000956	G	A	122000956	3	1	510	1	0	0	0	0	1	0	0	0	4279	1145	40	1	1639	1	DBC1	9	122000956	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	1524180	122000956	19212475	99	46253										
LHX2	0	genome.wustl.edu	37	chr9	126776287	126776288	+	Frame_Shift_Ins	INS	-	-	A													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccgcgctgtgcgccggctgcINSgggggcaagatctcggaccg							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	9	126776287	126776288	-	A	INS	LHX2	ENST00000373615	human	ensembl	69_37n	1	known	frame_shift_ins	c.168_169	p.G56fs	0.995:1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX2	HGNC	ENSG00000106689	42	0	0	25	7	21.88	-	-	-	A	126776288	-	A	126776287	7	5	510	1	0	1	1	0	0	0	0	0	8826	776	27	0	174	0	LHX2	9	126776287	Frame_Shift_Ins	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	4775331	126776287	14437144	100	46254										
YME1L1	0	genome.wustl.edu	37	chr10	27434428	27434428	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gggaagaaatgtttttgcctTtacaaaatccaggaagtaga	10	5	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	27434428	27434428	T	G	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	missense	c.431	p.K144T	0.994	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	207	0	0	160	54	25.23	-	-	-	G	27434428	T	G	27434428	3	3	510	1	0	0	0	0	1	0	0	0	17584	1841	64	5	1958	5	YME1L1	10	27434428	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09		27434428	108100319	101	46255										
ZNF438	0	genome.wustl.edu	37	chr10	31137957	31137957	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgtcctaggcccccaagcatCtgggactgtagtgtagttgg	13	10	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	31137957	31137957	C	A	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.1377	p.Q459H	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	141	0	0	68	26	27.66	-	-	-	A	31137957	C	A	31137957	3	1	510	1	0	0	0	0	1	0	0	0	18006	912	32	2	1117	2	ZNF438	10	31137957	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3703529	31137957	104396790	102	46256										
CREM	0	genome.wustl.edu	37	chr10	35500663	35500663	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagttgcagtgctggaagtcCagaacaagaagcttatagag	13	6	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	35500663	35500663	C	G	SNP	CREM	ENST00000395895	human	ensembl	69_37n	1	known	missense	c.1018	p.Q340E	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREM	HGNC	ENSG00000095794	160	0	0	136	35	20.47	-	-	-	G	35500663	C	G	35500663	3	3	510	1	0	0	0	0	1	0	0	0	3898	595	21	4	1262	4	CREM	10	35500663	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	4362706	35500663	100034084	103	46257										
ERCC6	0	genome.wustl.edu	37	chr10	50681546	50681546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	attgtatctcgtaatcagtgGctgtcttgaagctattgtag	10	6	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	50681546	50681546	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2686	p.P896S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	768	0	0	490	83	14.41	-	-	-	A	50681546	G	A	50681546	3	1	510	1	0	0	0	0	1	0	0	0	5254	1203	42	4	1827	4	ERCC6	10	50681546	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	15180883	50681546	84853201	104	46258										
MBL2	0	genome.wustl.edu	37	chr10	54528028	54528028	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttcaccctcgttccagtttgTgtaggtcagtctatttcctg	8	11	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	54528028	54528028	T	G	SNP	MBL2	ENST00000373968	human	ensembl	69_37n	-1	known	missense	c.616	p.T206P	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471	498	1	0.2	308	71	18.73	-	-	-	G	54528028	T	G	54528028	3	3	510	1	0	0	0	0	1	0	0	0	9421	1696	59	5	134	5	MBL2	10	54528028	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	3846482	54528028	81006719	105	46259										
ECD	0	genome.wustl.edu	37	chr10	74923668	74923668	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gtactccactgtgtcttccaTcgtagcaagcttcatggttt	8	11	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	74923668	74923668	T	G	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	missense	c.28	p.M10L	0.017	NULL	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882	296	0	0	243	45	15.62	-	-	-	G	74923668	T	G	74923668	3	3	510	1	0	0	0	0	1	0	0	0	4923	1435	50	5	2061	5	ECD	10	74923668	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	20395640	74923668	60611079	106	46260										
KIAA0913	0	genome.wustl.edu	37	chr10	75561184	75561184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acgcccatgggcatgatgcaGttcaacgacatcctacagaa	9	12	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	75561184	75561184	G	A	SNP	KIAA0913	ENST00000412198	human	ensembl	69_37n	1	known	missense	c.3245	p.S1082N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0913	HGNC	ENSG00000214655	201	0	0	142	38	20.99	-	-	-	A	75561184	G	A	75561184	3	1	510	1	0	0	0	0	1	0	0	0	8252	1020	36	4	5538	4	KIAA0913	10	75561184	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	637516	75561184	59973563	107	46261										
LRIT2	0	genome.wustl.edu	37	chr10	85982013	85982013	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacactggccctggtgtggaGgctggccctctaggctgagg	16	12	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	85982013	85982013	G	T	SNP	LRIT2	ENST00000538192	human	ensembl	69_37n	-1	known	missense	c.1346	p.P449H	0.904	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT2	HGNC	ENSG00000204033	134	1	0.74	91	17	15.74	-	-	-	T	85982013	G	T	85982013	3	4	510	1	0	0	0	0	1	0	0	0	9014	1000	35	4	340	4	LRIT2	10	85982013	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	10420829	85982013	49552734	108	46262										
LIPA	0	genome.wustl.edu	37	chr10	90986702	90986702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aatacacttgttcttggccaGttttattcagaatgaagtta	7	6	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	90986702	90986702	G	A	SNP	LIPA	ENST00000425287	human	ensembl	69_37n	-1	known	missense	c.494	p.T165I	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_AB_hydrolase_lipase	-	no_errors	LIPA	HGNC	ENSG00000107798	404	0	0	335	62	15.62	-	-	-	A	90986702	G	A	90986702	3	1	510	1	0	0	0	0	1	0	0	0	8875	1029	36	4	735	4	LIPA	10	90986702	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	5004689	90986702	44548045	109	46263										
KIF20B	0	genome.wustl.edu	37	chr10	91498778	91498779	+	Frame_Shift_Ins	INS	-	-	A													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgaaagcagatcttcagaggINSaaggaagaagattatgctga							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	91498778	91498779	-	A	INS	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	frame_shift_ins	c.3930_3931	p.E1311fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	215	0	0	323	70	17.81	-	-	-	A	91498779	-	A	91498778	7	5	510	1	0	1	1	0	0	0	0	0	8339	1165	41	0	3798	0	KIF20B	10	91498778	Frame_Shift_Ins	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	512076	91498778	44035969	110	46264										
CYP2C9	0	genome.wustl.edu	37	chr10	96748684	96748684	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccattttacagaactttaacCtgaaatctctggttgaccca	5	11	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	96748684	96748684	C	G	SNP	CYP2C9	ENST00000260682	human	ensembl	69_37n	1	known	missense	c.1372	p.L458V	0.003	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C9	HGNC	ENSG00000138109	539	0	0	302	63	17.26	-	-	-	G	96748684	C	G	96748684	3	3	510	1	0	0	0	0	1	0	0	0	4199	680	24	4	1406	4	CYP2C9	10	96748684	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	5249906	96748684	38786063	111	46265										
XPNPEP1	0	genome.wustl.edu	37	chr10	111646073	111646073	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agccattttcaaccgaaggtCtgcaaccttgtccttccagg	8	13	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	10	111646073	111646073	C	T	SNP	XPNPEP1	ENST00000502935	human	ensembl	69_37n	-1	known	missense	c.679	p.D227N	1.000	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP1	HGNC	ENSG00000108039	286	0	0	262	49	15.76	-	-	-	T	111646073	C	T	111646073	3	4	510	1	0	0	0	0	1	0	0	0	17539	913	32	2	1377	2	XPNPEP1	10	111646073	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	14897389	111646073	23888674	112	46266										
OR52N2	0	genome.wustl.edu	37	chr11	5842494	5842494	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggaaggtgtaattaaattttTacttggagacaaggttagtt	11	2	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	5842494	5842494	T	G	SNP	OR52N2	ENST00000317037	human	ensembl	69_37n	1	known	nonsense	c.929	p.L310*	0.166	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988	215	0	0	95	18	15.93	-	-	-	G	5842494	T	G	5842494	4	3	510	1	0	0	0	0	0	1	0	0	11201	1764	61	5	931	5	OR52N2	11	5842494	Nonsense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09		5842494	129164022	113	46267										
TPP1	0	genome.wustl.edu	37	chr11	6638925	6638925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacttctgggctccggctgcCaagagccatttttgcaccgt	10	14	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	6638925	6638925	C	A	SNP	TPP1	ENST00000299427	human	ensembl	69_37n	-1	known	missense	c.312	p.L104F	0.258	pfam_Peptidase_S53_propep,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340	474	1	0.21	171	110	39.15	-	-	-	A	6638925	C	A	6638925	3	1	510	1	0	0	0	0	1	0	0	0	16507	593	21	4	1419	4	TPP1	11	6638925	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	796431	6638925	128367591	114	46268										
BDNF	0	genome.wustl.edu	37	chr11	27695705	27695705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggatgcacagtcatgccataCagaagcgtgtgggtagacgc	14	9	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	27695705	27695705	C	G	SNP	BDNF	ENST00000438929	human	ensembl	69_37n	-1	known	missense	c.127	p.V43L	0.045	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697	208	0	0	162	37	18.59	-	-	-	G	27695705	C	G	27695705	3	3	510	1	0	0	0	0	1	0	0	0	1398	478	17	4	870	4	BDNF	11	27695705	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	21056780	27695705	107310811	115	46269										
OR5L1	0	genome.wustl.edu	37	chr11	55579684	55579684	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gtgcttcccacctcacagctAtcactgtcttccatggaaca	6	15	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	55579684	55579684	A	T	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.742	p.I248F	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	431	0	0	320	40	11.05	-	-	-	T	55579684	A	T	55579684	3	4	510	1	0	0	0	0	1	0	0	0	11243	449	16	5	744	5	OR5L1	11	55579684	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	27883979	55579684	79426832	116	46270										
OR5AS1	0	genome.wustl.edu	37	chr11	55798071	55798071	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tcaagccttcaaattcccatGtattattttcttagcaactt	3	10	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	55798071	55798071	G	C	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	missense	c.177	p.M59I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	156	0	0	118	21	15.11	-	-	-	C	55798071	G	C	55798071	3	2	510	1	0	0	0	0	1	0	0	0	11219	1377	48	4	179	4	OR5AS1	11	55798071	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	218387	55798071	79208445	117	46271										
OR9G4	0	genome.wustl.edu	37	chr11	56510423	56510423	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacggtgtagaacagagcagCtactttgtccctctctaggg	11	11	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	56510423	56510423	C	G	SNP	OR9G4	ENST00000302957	human	ensembl	69_37n	-1	known	missense	c.865	p.A289P	0.463	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9G4	HGNC	ENSG00000172457	593	0	0	467	87	15.7	-	-	-	G	56510423	C	G	56510423	3	3	510	1	0	0	0	0	1	0	0	0	11324	797	28	4	121	4	OR9G4	11	56510423	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	712352	56510423	78496093	118	46272										
CD5	0	genome.wustl.edu	37	chr11	60890420	60890423	+	Frame_Shift_Del	DEL	GCAA	GCAA	-													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcctggccgcaggcacggtgGcaagcatcatcctggccctg							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	GCAA	GCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	60890420	60890423	GCAA	-	DEL	CD5	ENST00000347785	human	ensembl	69_37n	1	known	frame_shift_del	c.1141_1144	p.I383fs	0.043:0.005:0.003:0.959	prints_Tcell_CD5	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	281	0	0	182	64	26.02	-	-	-	-	60890423	GCAA	-	60890420	7	5	510	1	0	1	0	1	0	0	0	0	3050	1203	42	0	1167	0	CD5	11	60890420	Frame_Shift_Del	DEL	GCAA	TCGA-BH-A0BZ-01A-31D-A12Q-09	4379997	60890420	74116096	119	46273										
STIP1	0	genome.wustl.edu	37	chr11	63960739	63960739	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atggctgcaagactgtcgacCtaaagcctgactggggcaag	13	10	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	63960739	63960739	C	G	SNP	STIP1	ENST00000305218	human	ensembl	69_37n	1	known	missense	c.199	p.L67V	0.648	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439	158	0	0	162	31	16.06	-	-	-	G	63960739	C	G	63960739	3	3	510	1	0	0	0	0	1	0	0	0	15376	680	24	4	205	4	STIP1	11	63960739	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3070319	63960739	71045777	120	46274										
PITPNM1	0	genome.wustl.edu	37	chr11	67270037	67270037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acctgcagggcagccttgggCagcagtgcccggaaccagcc	14	15	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	67270037	67270037	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	silent	c.231	p.L77	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	166	0	0	103	21	16.94	-	-	-	T	67270037	C	T	67270037	2	4	510	1	0	0	0	0	0	0	0	1	12024	697	25	4		4	PITPNM1	11	67270037	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	3309298	67270037	67736479	121	46275										
ARRB1	0	genome.wustl.edu	37	chr11	74995294	74995294	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cctacctctccgctctttgaGatactcaggatccaccagga	7	15	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	74995294	74995294	G	A	SNP	ARRB1	ENST00000393505	human	ensembl	69_37n	-1	known	missense	c.142	p.L48F	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARRB1	HGNC	ENSG00000137486	69	0	0	119	21	15	-	-	-	A	74995294	G	A	74995294	3	1	510	1	0	0	0	0	1	0	0	0	984	942	33	2	1166	2	ARRB1	11	74995294	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7725257	74995294	60011222	122	46276										
MYO7A	0	genome.wustl.edu	37	chr11	76918405	76918405	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccaccaggctgctcctcaaGtcctcagagggattcagcct	10	15	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	76918405	76918405	G	C	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.5814	p.K1938N	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	161	0	0	144	25	14.79	-	-	-	C	76918405	G	C	76918405	3	2	510	1	0	0	0	0	1	0	0	0	10154	1020	36	4	6010	4	MYO7A	11	76918405	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	1923111	76918405	58088111	123	46277										
KCTD21	0	genome.wustl.edu	37	chr11	77885303	77885303	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggccttggagagctccacttCcttctcctgcagggcctcaa	10	15	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	77885303	77885303	C	A	SNP	KCTD21	ENST00000340067	human	ensembl	69_37n	-1	known	nonsense	c.298	p.E100*	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997	287	1	0.35	252	39	13.4	-	-	-	A	77885303	C	A	77885303	4	1	510	1	0	0	0	0	0	1	0	0	8163	864	30	2	488	2	KCTD21	11	77885303	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	966898	77885303	57121213	124	46278										
ZC3H12C	0	genome.wustl.edu	37	chr11	110034079	110034079	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aagaaacctattgttcctgaAcacaaaaagcagccttgtcc	6	11	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	110034079	110034079	A	C	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	missense	c.1230	p.E410D	0.997	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	169	0	0	113	40	26.14	-	-	-	C	110034079	A	C	110034079	3	2	510	1	0	0	0	0	1	0	0	0	17659	40	2	5	1248	5	ZC3H12C	11	110034079	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	32148776	110034079	24972437	125	46279										
SIDT2	0	genome.wustl.edu	37	chr11	117054809	117054809	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gatgaaccggtcgatcaaggGcaccgccagaaaaccctgtc	11	13	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	117054809	117054809	G	C	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.822	p.G274	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	219	0	0	85	94	52.51	-	-	-	C	117054809	G	C	117054809	2	2	510	1	0	0	0	0	0	0	0	1	14392	1190	42	4		4	SIDT2	11	117054809	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7020730	117054809	17951707	126	46280										
GRAMD1B	0	genome.wustl.edu	37	chr11	123476187	123476187	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcagtgaggcccccgtctcgGtatgggcagtcagcctttga	14	12	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	11	123476187	123476187	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	splice_site	c.894+1	e9+1	1.000	-	-	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	404	0	0	290	88	23.16	-	-	-	A	123476187	G	A	123476187	5	1	510	1	0	0	0	0	0	0	1	0	6799	1275	44	4	929	4	GRAMD1B	11	123476187	Splice_Site	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	6421378	123476187	11530329	127	46281										
LPAR5	0	genome.wustl.edu	37	chr12	6730247	6730247	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttacacatgtacacgctcacCaccgagtgcacgcgcagcgc	9	16	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	6730247	6730247	C	T	SNP	LPAR5	ENST00000329858	human	ensembl	69_37n	-1	known	silent	c.168	p.V56	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	LPAR5	HGNC	ENSG00000184574	260	0	0	190	30	13.64	-	-	-	T	6730247	C	T	6730247	2	4	510	1	0	0	0	0	0	0	0	1	8974	581	21	4		4	LPAR5	12	6730247	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		6730247	127121648	128	46282										
MLL2	0	genome.wustl.edu	37	chr12	49424516	49424516	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aagaggctaaaattggcggtGatagcaggctccgttagggg	16	6	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	49424516	49424516	G	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.13707	p.I4569	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	37	0	0	58	8	12.12	-	-	-	T	49424516	G	T	49424516	2	4	510	1	0	0	0	0	0	0	0	1	9692	1280	45	2		2	MLL2	12	49424516	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	42694269	49424516	84427379	129	46283										
KRT82	0	genome.wustl.edu	37	chr12	52800015	52800016	+	Frame_Shift_Del	DEL	CT	CT	-													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagccgagtatgagctgaaaCtctgactgccacacctggag							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	52800015	52800016	CT	-	DEL	KRT82	ENST00000257974	human	ensembl	69_37n	-1	known	frame_shift_del	c.47_46	p.S16fs	0.355:0.086	NULL	pfam_F,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850	74	0	0	74	30	28.57	-	-	-	-	52800016	CT	-	52800015	7	5	510	1	0	1	0	1	0	0	0	0	8549	565	20	0	1530	0	KRT82	12	52800015	Frame_Shift_Del	DEL	CT	TCGA-BH-A0BZ-01A-31D-A12Q-09	3375499	52800015	81051880	130	46284										
ZC3H10	0	genome.wustl.edu	37	chr12	56515095	56515095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaatgccatgctcaggaagcGggtagaggagttaaagaagc	15	6	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	56515095	56515095	G	T	SNP	ZC3H10	ENST00000257940	human	ensembl	69_37n	1	known	missense	c.749	p.R250L	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H10	HGNC	ENSG00000135482	99	0	0	73	19	20.65	-	-	-	T	56515095	G	T	56515095	3	4	510	1	0	0	0	0	1	0	0	0	17655	1116	39	3	751	3	ZC3H10	12	56515095	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3715080	56515095	77336800	131	46285										
ATP5B	0	genome.wustl.edu	37	chr12	57036286	57036286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cttggtagtggtaattctttCctgcatagtacccatgtcag	9	9	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	57036286	57036286	C	G	SNP	ATP5B	ENST00000262030	human	ensembl	69_37n	-1	known	missense	c.1030	p.E344Q	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,smart_AAA+_ATPase,tigrfam_ATPase_F1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,smart_AAA+_ATPase,tigrfam_ATPase_F1-cplx_bsu	-	no_errors	ATP5B	HGNC	ENSG00000110955	393	0	0	373	52	12.24	-	-	-	G	57036286	C	G	57036286	3	3	510	1	0	0	0	0	1	0	0	0	1152	864	30	2	575	2	ATP5B	12	57036286	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	521191	57036286	76815609	132	46286										
SRGAP1	0	genome.wustl.edu	37	chr12	64456793	64456793	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cctccagacatgagggcttaGacattattgagaatgcagtt	10	8	0	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	64456793	64456793	G	T	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.898	p.D300Y	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	294	1	0.34	258	45	14.85	-	-	-	T	64456793	G	T	64456793	3	4	510	1	0	0	0	0	1	0	0	0	15236	942	33	2	924	2	SRGAP1	12	64456793	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7420507	64456793	69395102	133	46287										
UTP20	0	genome.wustl.edu	37	chr12	101699822	101699822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tttcccaagttacaagcaaaCatttcaactggtgtatccaa	5	10	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	101699822	101699822	C	T	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	silent	c.1911	p.N637	0.997	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	365	0	0	310	46	12.89	-	-	-	T	101699822	C	T	101699822	2	4	510	1	0	0	0	0	0	0	0	1	17196	477	17	4		4	UTP20	12	101699822	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	37243029	101699822	32152073	134	46288										
PAH	0	genome.wustl.edu	37	chr12	103234267	103234267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggtcgtagcgaactgagaagGgccgaggtattgtggcagca	17	7	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	103234267	103234267	G	T	SNP	PAH	ENST00000553106	human	ensembl	69_37n	-1	known	missense	c.1226	p.P409H	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759	360	0	0	297	66	18.18	-	-	-	T	103234267	G	T	103234267	3	4	510	1	0	0	0	0	1	0	0	0	11467	1232	43	4	140	4	PAH	12	103234267	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	1534445	103234267	30617628	135	46289										
ALDH1L2	0	genome.wustl.edu	37	chr12	105456710	105456710	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aacaagtccatttttggtaaCgagaccaggcttcttggcac	9	10	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	105456710	105456710	C	A	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.877	p.V293F	0.989	pfam_Formyl_trans_C,superfamily_Formyl_transferase_C-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	232	1	0.43	187	24	11.32	-	-	-	A	105456710	C	A	105456710	3	1	510	1	0	0	0	0	1	0	0	0	495	536	19	3	1962	3	ALDH1L2	12	105456710	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2222443	105456710	28395185	136	46290										
PRDM4	0	genome.wustl.edu	37	chr12	108133303	108133303	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgggtgaaagacttgtcacaCaaggtacacctgtagttctt	10	8	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	108133303	108133303	C	G	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	missense	c.1950	p.L650F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	189	0	0	134	25	15.72	-	-	-	G	108133303	C	G	108133303	3	3	510	1	0	0	0	0	1	0	0	0	12540	477	17	4	463	4	PRDM4	12	108133303	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	2676593	108133303	25718592	137	46291										
TCHP	0	genome.wustl.edu	37	chr12	110352416	110352416	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gctgaaatcggccaggaagcAggagctggaagcccaggtag	16	9	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	12	110352416	110352416	A	C	SNP	TCHP	ENST00000312777	human	ensembl	69_37n	1	known	missense	c.1304	p.Q435P	0.989	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437	133	0	0	147	27	15.52	-	-	-	C	110352416	A	C	110352416	3	2	510	1	0	0	0	0	1	0	0	0	15797	188	7	5	1342	5	TCHP	12	110352416	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	2219113	110352416	23499479	138	46292										
SGCG	0	genome.wustl.edu	37	chr13	23808841	23808841	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	attgtatgccaaagaaatacActccagagtggtaagaaaat	8	6	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	13	23808841	23808841	A	C	SNP	SGCG	ENST00000218867	human	ensembl	69_37n	1	known	missense	c.287	p.H96P	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683	157	1	0.63	151	19	11.11	-	-	-	C	23808841	A	C	23808841	3	2	510	1	0	0	0	0	1	0	0	0	14291	159	6	5	293	5	SGCG	13	23808841	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09		23808841	91361037	139	46293										
CPB2	0	genome.wustl.edu	37	chr13	46627925	46627925	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccaatcgtccccacctccagGagctaggtctaaaagaagaa	8	13	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	13	46627925	46627925	G	C	SNP	CPB2	ENST00000181383	human	ensembl	69_37n	-1	known	missense	c.1096	p.P366A	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618	165	1	0.6	129	35	21.34	-	-	-	C	46627925	G	C	46627925	3	2	510	1	0	0	0	0	1	0	0	0	3827	1174	41	2	179	2	CPB2	13	46627925	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	22819084	46627925	68541953	140	46294										
PCDH17	0	genome.wustl.edu	37	chr13	58240645	58240645	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	caattacatgggcagcaggcAgcagtttgttcaaaggtaag	12	7	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	13	58240645	58240645	A	C	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	missense	c.2609	p.Q870P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	350	0	0	145	114	44.02	-	-	-	C	58240645	A	C	58240645	3	2	510	1	0	0	0	0	1	0	0	0	11585	188	7	5	2615	5	PCDH17	13	58240645	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	11612720	58240645	56929233	141	46295										
PCDH17	0	genome.wustl.edu	37	chr13	58298937	58298937	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgaatcccactgggaaaaagActttttgtacatttggaaaa	8	6	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	13	58298937	58298937	A	C	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	missense	c.2989	p.T997P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	282	1	0.35	175	43	19.63	-	-	-	C	58298937	A	C	58298937	3	2	510	1	0	0	0	0	1	0	0	0	11585	275	10	5	3003	5	PCDH17	13	58298937	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	58292	58298937	56870941	142	46296										
TEP1	0	genome.wustl.edu	37	chr14	20837883	20837883	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttagggtcctactaggattcTctaagtttatatcaaagttc	7	7	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	20837883	20837883	T	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.7373	p.E2458V	0.988	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	392	0	0	382	76	16.59	-	-	-	A	20837883	T	A	20837883	3	1	510	1	0	0	0	0	1	0	0	0	15854	1551	54	5	526	5	TEP1	14	20837883	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09		20837883	86511657	143	46297										
OR6S1	0	genome.wustl.edu	37	chr14	21109448	21109448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agccccactcatgagcaaggGgtagcgcagaggatgacaga	14	10	1	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	21109448	21109448	G	T	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	missense	c.403	p.P135T	0.976	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	182	1	0.55	157	63	28.51	-	-	-	T	21109448	G	T	21109448	3	4	510	1	0	0	0	0	1	0	0	0	11282	1232	43	4	596	4	OR6S1	14	21109448	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	271565	21109448	86240092	144	46298										
TM9SF1	0	genome.wustl.edu	37	chr14	24658635	24658635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagaactcagtccatcttgaGgttaacatagatataccgga	8	9	2	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	24658635	24658635	G	C	SNP	TM9SF1	ENST00000556387	human	ensembl	69_37n	-1	known	missense	c.2434	p.L812V	1.000	NULL	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	89	0	0	125	25	16.67	-	-	-	C	24658635	G	C	24658635	3	2	510	1	0	0	0	0	1	0	0	0	16072	1000	35	4	17	4	TM9SF1	14	24658635	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3549187	24658635	82690905	145	46299										
NYNRIN	0	genome.wustl.edu	37	chr14	24886547	24886547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctgtcactctataggatatgGggcttcccaaccccagagaa	9	12	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	24886547	24886547	G	C	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.5592	p.W1864C	1.000	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	74	0	0	88	17	16.04	-	-	-	C	24886547	G	C	24886547	3	2	510	1	0	0	0	0	1	0	0	0	10869	1241	43	4	5622	4	NYNRIN	14	24886547	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	227912	24886547	82462993	146	46300										
SAMD4A	0	genome.wustl.edu	37	chr14	55231251	55231251	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gctcatagacaagtgtctaaTtcatgaggtgagtagtgaca	11	6	3	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	55231251	55231251	T	C	SNP	SAMD4A	ENST00000392067	human	ensembl	69_37n	1	known	missense	c.1589	p.I530T	0.975	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	273	0	0	114	84	42.42	-	-	-	C	55231251	T	C	55231251	3	2	510	1	0	0	0	0	1	0	0	0	13907	1493	52	5	1612	5	SAMD4A	14	55231251	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	30344704	55231251	52118289	147	46301										
PRKCH	0	genome.wustl.edu	37	chr14	62014470	62014470	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctctcactcagttcatgaccAagaaccccaccatgcgcttg	6	16	3	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	62014470	62014470	A	G	SNP	PRKCH	ENST00000332981	human	ensembl	69_37n	1	known	missense	c.1771	p.K591E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075	138	0	0	65	11	14.29	-	-	-	G	62014470	A	G	62014470	3	3	510	1	0	0	0	0	1	0	0	0	12594	131	5	5	1821	5	PRKCH	14	62014470	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	6783219	62014470	45335070	148	46302										
NRXN3	0	genome.wustl.edu	37	chr14	79175993	79175993	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggacattcagcgagatggcaGatcaggtaggaagaggcagg	17	6	2	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	79175993	79175993	G	T	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.1649	p.R550I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	175	0	0	42	38	47.5	-	-	-	T	79175993	G	T	79175993	3	4	510	1	0	0	0	0	1	0	0	0	10740	942	33	2	542	2	NRXN3	14	79175993	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	17161523	79175993	28173547	149	46303										
EML5	0	genome.wustl.edu	37	chr14	89091378	89091378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggtgtacatggcaaacacagGcccgttgtgagctctcgcca	12	12	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	14	89091378	89091378	G	A	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.4834	p.P1612S	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	140	0	0	66	40	37.74	-	-	-	A	89091378	G	A	89091378	3	1	510	1	0	0	0	0	1	0	0	0	5137	1203	42	4	1135	4	EML5	14	89091378	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	9915385	89091378	18258162	150	46304										
APBA2	0	genome.wustl.edu	37	chr15	29397678	29397678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	accccgaagacttgagccagAaggaatacagcgacatcatc	9	12	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	15	29397678	29397678	A	G	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.1621	p.K541E	1.000	superfamily_PDZ,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	318	0	0	137	58	29.74	-	-	-	G	29397678	A	G	29397678	3	3	510	1	0	0	0	0	1	0	0	0	758	247	9	5	1651	5	APBA2	15	29397678	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09		29397678	73133714	151	46305										
PPIP5K1	0	genome.wustl.edu	37	chr15	43873233	43873233	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacagtcatcgtagtatttcAtcgagttcttgacaaaacta	6	9	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	15	43873233	43873233	A	T	SNP	PPIP5K1	ENST00000420765	human	ensembl	69_37n	-1	known	missense	c.1028	p.M343K	1.000	NULL	pfam_His_Pase_superF_clade-2,superfamily_MTCP1	-	no_errors	PPIP5K1	HGNC	ENSG00000168781	53	0	0	35	10	22.22	-	-	-	T	43873233	A	T	43873233	3	4	510	1	0	0	0	0	1	0	0	0	12409	217	8	5	3485	5	PPIP5K1	15	43873233	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	14475555	43873233	58658159	152	46306										
SQRDL	0	genome.wustl.edu	37	chr15	45951281	45951281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggtgctgggtgggggcagtGgcggaatcaccatggctgcc	19	9	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	15	45951281	45951281	G	A	SNP	SQRDL	ENST00000260324	human	ensembl	69_37n	1	known	missense	c.160	p.G54S	0.998	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	SQRDL	HGNC	ENSG00000137767	214	0	0	110	34	23.61	-	-	-	A	45951281	G	A	45951281	3	1	510	1	0	0	0	0	1	0	0	0	15220	1348	47	4	162	4	SQRDL	15	45951281	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	2078048	45951281	56580111	153	46307										
MYO5C	0	genome.wustl.edu	37	chr15	52517715	52517715	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agtagttctatctctttttcGaactcagagattgtctgaat	7	7	4	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	15	52517715	52517715	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	silent	c.3222	p.F1074	0.952	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	737	0	0	438	92	17.36	-	-	-	A	52517715	G	A	52517715	2	1	510	1	0	0	0	0	0	0	0	1	10152	1049	37	1		1	MYO5C	15	52517715	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	6566434	52517715	50013677	154	46308										
TLE3	0	genome.wustl.edu	37	chr15	70346800	70346800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	accagggtctggttgtgcagGtcccagacagcaatgttccc	12	12	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	15	70346800	70346800	G	C	SNP	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	missense	c.1812	p.D604E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	154	0	0	87	21	19.44	-	-	-	C	70346800	G	C	70346800	3	2	510	1	0	0	0	0	1	0	0	0	16035	1252	44	4	526	4	TLE3	15	70346800	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	17829085	70346800	32184592	155	46309										
SRRM2	0	genome.wustl.edu	37	chr16	2815562	2815562	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttccaggtcatcaccagagcCcaagaccaagtctcgtacac	7	15	3	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	2815562	2815562	C	G	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.5033	p.P1678R	0.952	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	167	0	0	174	29	14.29	-	-	-	G	2815562	C	G	2815562	3	3	510	1	0	0	0	0	1	0	0	0	15260	623	22	4	5071	4	SRRM2	16	2815562	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		2815562	87539191	156	46310										
GRIN2A	0	genome.wustl.edu	37	chr16	9862753	9862753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggccggtcggagcacacgccCgtgaaacagaagcgcagctt	14	13	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	9862753	9862753	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	silent	c.2550	p.T850	0.082	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	187	0	0	82	42	33.6	-	-	-	T	9862753	C	T	9862753	2	4	510	1	0	0	0	0	0	0	0	1	6830	639	23	1		1	GRIN2A	16	9862753	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	7047191	9862753	80492000	157	46311										
EEF2K	0	genome.wustl.edu	37	chr16	22260122	22260122	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggatgatgaagttctgatcAagatggcatctcaggtgagc	13	6	3	5			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	22260122	22260122	A	C	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	missense	c.394	p.K132Q	1.000	superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	181	0	0	188	34	15.32	-	-	-	C	22260122	A	C	22260122	3	2	510	1	0	0	0	0	1	0	0	0	4965	131	5	5	404	5	EEF2K	16	22260122	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	12397369	22260122	68094631	158	46312										
ALDOA	0	genome.wustl.edu	37	chr16	30079970	30079970	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taccctgaccccaacaggtaGacaagggcgtggtccccctg	11	15	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	30079970	30079970	G	C	SNP	ALDOA	ENST00000338110	human	ensembl	69_37n	1	known	missense	c.328	p.D110H	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	348	0	0	303	47	13.43	-	-	-	C	30079970	G	C	30079970	3	2	510	1	0	0	0	0	1	0	0	0	507	942	33	2	338	2	ALDOA	16	30079970	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7819848	30079970	60274783	159	46313										
ZNF423	0	genome.wustl.edu	37	chr16	49669760	49669760	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccaggccacccacctgtccGttggcgctgcgggccatgca	13	17	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	49669760	49669760	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	silent	c.3303	p.N1101	0.192	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	32	0	0	13	7	35	-	-	-	A	49669760	G	A	49669760	2	1	510	1	0	0	0	0	0	0	0	1	17994	1136	40	1		1	ZNF423	16	49669760	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	19589790	49669760	40684993	160	46314										
CPNE2	0	genome.wustl.edu	37	chr16	57153125	57153125	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aggacctctttgggaagtcaGacccctttctggagttttat	10	9	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	57153125	57153125	G	C	SNP	CPNE2	ENST00000290776	human	ensembl	69_37n	1	known	missense	c.526	p.D176H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE2	HGNC	ENSG00000140848	245	0	0	163	36	18.09	-	-	-	C	57153125	G	C	57153125	3	2	510	1	0	0	0	0	1	0	0	0	3842	942	33	2	544	2	CPNE2	16	57153125	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	7483365	57153125	33201628	161	46315										
CDH8	0	genome.wustl.edu	37	chr16	61854993	61854993	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagtgccaagaaccacatctTccggtactgagaagtgatac	9	11	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	61854993	61854993	T	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.860	p.E287A	1.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	221	1	0.45	143	35	19.66	-	-	-	G	61854993	T	G	61854993	3	3	510	1	0	0	0	0	1	0	0	0	3145	1783	62	5	1567	5	CDH8	16	61854993	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	4701868	61854993	28499760	162	46316										
ZDHHC1	0	genome.wustl.edu	37	chr16	67428930	67428930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccggatccgaggtctcagaCgttcgcactttatacacgcg	11	13	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	16	67428930	67428930	C	G	SNP	ZDHHC1	ENST00000348579	human	ensembl	69_37n	-1	known	missense	c.1205	p.R402P	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714	45	0	0	24	9	27.27	-	-	-	G	67428930	C	G	67428930	3	3	510	1	0	0	0	0	1	0	0	0	17696	536	19	3	260	3	ZDHHC1	16	67428930	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	5573937	67428930	22925823	163	46317										
ZZEF1	0	genome.wustl.edu	37	chr17	3980054	3980054	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aagtccagcaggaagataacCtaatggaagatggatgaagc	12	6	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	3980054	3980054	C	G	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	splice_site	c.3112-1	e21-1	1.000	-	-	-	no_errors	ZZEF1	HGNC	ENSG00000074755	202	0	0	107	42	28	-	-	-	G	3980054	C	G	3980054	5	3	510	1	0	0	0	0	0	0	1	0	18346	695	24	4	5914	4	ZZEF1	17	3980054	Splice_Site	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		3980054	77215156	164	46318										
SAT2	0	genome.wustl.edu	37	chr17	7530899	7530899	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agtcttcacccgaatcagccTcaggatatctccacagtctc	6	15	6	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	7530899	7530899	T	A	SNP	SAT2	ENST00000269298	human	ensembl	69_37n	-1	known	missense	c.55	p.R19W	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SAT2	HGNC	ENSG00000141504	95	0	0	53	15	21.74	-	-	-	A	7530899	T	A	7530899	3	1	510	1	0	0	0	0	1	0	0	0	13939	1550	54	5	481	5	SAT2	17	7530899	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	3550845	7530899	73664311	165	46319										
MYH1	0	genome.wustl.edu	37	chr17	10405125	10405125	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gttgtttgtcattttctataTccattgtggattcttgagcc	8	7	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	10405125	10405125	T	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.3215	p.D1072V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	434	0	0	256	86	25.07	-	-	-	A	10405125	T	A	10405125	3	1	510	1	0	0	0	0	1	0	0	0	10101	1435	50	5	2668	5	MYH1	17	10405125	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	2874226	10405125	70790085	166	46320										
COX10	0	genome.wustl.edu	37	chr17	13980191	13980191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gagacctctctcaccgcccaGcctatctttgtccagaaagc	7	16	3	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	13980191	13980191	G	A	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	missense	c.317	p.S106N	0.000	pirsf_Protohaem_IX_farnesylTrfase_mt	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	287	0	0	152	47	23.5	-	-	-	A	13980191	G	A	13980191	3	1	510	1	0	0	0	0	1	0	0	0	3792	971	34	4	327	4	COX10	17	13980191	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3575066	13980191	67215019	167	46321										
TOM1L2	0	genome.wustl.edu	37	chr17	17786172	17786172	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcagctggatccacttcaggGacactctggcatggcaacaa	11	12	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	17786172	17786172	G	A	SNP	TOM1L2	ENST00000379504	human	ensembl	69_37n	-1	known	silent	c.507	p.V169	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662	210	0	0	134	33	19.64	-	-	-	A	17786172	G	A	17786172	2	1	510	1	0	0	0	0	0	0	0	1	16448	1161	41	2		2	TOM1L2	17	17786172	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3805981	17786172	63409038	168	46322										
NEK8	0	genome.wustl.edu	37	chr17	27067531	27067531	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	acagctgcccccagcaggtgCccatgcccccaggacaggaa	11	17	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	27067531	27067531	C	A	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.1468	p.P490T	0.963	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	131	1	0.76	92	19	17.12	-	-	-	A	27067531	C	A	27067531	3	1	510	1	0	0	0	0	1	0	0	0	10402	739	26	4	1510	4	NEK8	17	27067531	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	9281359	27067531	54127679	169	46323										
ANKRD13B	0	genome.wustl.edu	37	chr17	27934851	27934851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gtgtgcccgtgtgctcctggCgcacggcgcagacgtgggca	17	13	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	27934851	27934851	C	T	SNP	ANKRD13B	ENST00000394859	human	ensembl	69_37n	1	known	missense	c.206	p.A69V	0.915	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13B	HGNC	ENSG00000198720	24	0	0	9	5	35.71	-	-	-	T	27934851	C	T	27934851	3	4	510	1	0	0	0	0	1	0	0	0	642	768	27	1	212	1	ANKRD13B	17	27934851	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	867320	27934851	53260359	170	46324										
GPR179	0	genome.wustl.edu	37	chr17	36487341	36487341	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agctgcctcgcttcttgggcAggtgggggttgtttgcggcc	17	10	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	36487341	36487341	A	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.2111	p.L704Q	1.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	208	0	0	147	22	13.02	-	-	-	T	36487341	A	T	36487341	3	4	510	1	0	0	0	0	1	0	0	0	6724	188	7	5	4996	5	GPR179	17	36487341	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	8552490	36487341	44707869	171	46325										
KRTAP17-1	0	genome.wustl.edu	37	chr17	39471833	39471833	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccacagcagcccggctgacAgcagcactcttcacagcagt	10	16	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	39471833	39471833	A	G	SNP	KRTAP17-1	ENST00000334202	human	ensembl	69_37n	-1	known	missense	c.70	p.C24R	1.000	NULL	NULL	-	no_errors	KRTAP17-1	HGNC	ENSG00000186860	58	0	0	25	8	24.24	-	-	-	G	39471833	A	G	39471833	3	3	510	1	0	0	0	0	1	0	0	0	8580	188	7	5	251	5	KRTAP17-1	17	39471833	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	2984492	39471833	41723377	172	46326										
HAP1	0	genome.wustl.edu	37	chr17	39889034	39889034	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	atctttttgactggcggaggTaggttaggacacagtgctgc	14	7	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	39889034	39889034	T	C	SNP	HAP1	ENST00000310778	human	ensembl	69_37n	-1	known	silent	c.486	p.L162	0.019	pfam_HAP1_N	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805	248	0	0	238	53	16.51	-	-	-	C	39889034	T	C	39889034	2	2	510	1	0	0	0	0	0	0	0	1	7004	1625	57	5		5	HAP1	17	39889034	Silent	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	417201	39889034	41306176	173	46327										
COASY	0	genome.wustl.edu	37	chr17	40715169	40715169	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taccctccacgatcaggccaGcttcccccgtggccgggtct	10	18	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	40715169	40715169	G	C	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	missense	c.616	p.A206P	0.845	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	126	0	0	96	13	11.82	-	-	-	C	40715169	G	C	40715169	3	2	510	1	0	0	0	0	1	0	0	0	3682	971	34	4	622	4	COASY	17	40715169	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	826135	40715169	40480041	174	46328										
ABCC3	0	genome.wustl.edu	37	chr17	48746861	48746861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgacctggagatgctgcctgGtggggatcagacagagattg	16	7	1	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	48746861	48746861	G	T	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.2213	p.G738V	0.993	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	132	0	0	102	23	18.11	-	-	-	T	48746861	G	T	48746861	3	4	510	1	0	0	0	0	1	0	0	0	54	1261	44	4	2363	4	ABCC3	17	48746861	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	8031692	48746861	32448349	175	46329										
OR4D2	0	genome.wustl.edu	37	chr17	56247852	56247852	+	Frame_Shift_Del	DEL	C	C	-													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	catcggccacacagtcatgaCccccatgctcaaccccatga							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	56247852	56247852	C	-	DEL	OR4D2	ENST00000545221	human	ensembl	69_37n	1	known	frame_shift_del	c.836	p.M281fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713	234	0	0	167	28	14.21	-	-	-	-	56247852	C	-	56247852	7	5	510	1	0	1	0	1	0	0	0	0	11129	507	18	0	838	0	OR4D2	17	56247852	Frame_Shift_Del	DEL	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	7500991	56247852	24947358	176	46330										
BZRAP1	0	genome.wustl.edu	37	chr17	56389025	56389025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	actgggagccaactgatgatCaagatcccaggggagggccc	14	11	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	56389025	56389025	C	G	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	missense	c.2988	p.L996F	0.996	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	71	0	0	84	11	11.58	-	-	-	G	56389025	C	G	56389025	3	3	510	1	0	0	0	0	1	0	0	0	1586	825	29	2	2641	2	BZRAP1	17	56389025	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	141173	56389025	24806185	177	46331										
CLTC	0	genome.wustl.edu	37	chr17	57738819	57738819	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	taaagggaattcttcgtactCcagacactatccgtcggttc	8	11	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	57738819	57738819	C	A	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	missense	c.1183	p.P395T	1.000	superfamily_ARM-type_fold,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	222	1	0.45	225	32	12.45	-	-	-	A	57738819	C	A	57738819	3	1	510	1	0	0	0	0	1	0	0	0	3596	855	30	2	1213	2	CLTC	17	57738819	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	1349794	57738819	23456391	178	46332										
C17orf80	0	genome.wustl.edu	37	chr17	71232219	71232219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tacctaatgatgtacaaactAcctctggtgatctcaaattg	6	9	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	71232219	71232219	A	G	SNP	C17orf80	ENST00000359042	human	ensembl	69_37n	1	known	missense	c.598	p.T200A	0.034	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219	129	0	0	221	66	23	-	-	-	G	71232219	A	G	71232219	3	3	510	1	0	0	0	0	1	0	0	0	1901	391	14	5	600	5	C17orf80	17	71232219	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	13493400	71232219	9962991	179	46333										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74639652	74639652	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gcgaagagaaagaagaccagGacagccagaagcaaggacca	13	9	0	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	17	74639652	74639652	G	C	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	silent	c.69	p.V23	0.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	170	1	0.58	326	42	11.41	-	-	-	C	74639652	G	C	74639652	2	2	510	1	0	0	0	0	0	0	0	1	15314	1161	41	2		2	ST6GALNAC1	17	74639652	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	3407433	74639652	6555558	180	46334										
PTPRM	0	genome.wustl.edu	37	chr18	8076452	8076452	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tttcctcccaccctcctttaGtcccaggtgctgttcccact	5	18	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	18	8076452	8076452	G	T	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	splice_site	c.1442-1	e9-1	1.000	-	-	-	no_errors	PTPRM	HGNC	ENSG00000173482	178	0	0	202	29	12.55	-	-	-	T	8076452	G	T	8076452	5	4	510	1	0	0	0	0	0	0	1	0	12889	1043	36	4	1475	4	PTPRM	18	8076452	Splice_Site	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		8076452	70000796	181	46335										
CEP192	0	genome.wustl.edu	37	chr18	13087076	13087076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggaaggcgttaaaaaattaTctgacagttacatggtaaca	9	5	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	18	13087076	13087076	T	C	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.5677	p.S1893P	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	142	0	0	181	83	31.32	-	-	-	C	13087076	T	C	13087076	3	2	510	1	0	0	0	0	1	0	0	0	3280	1435	50	5	5795	5	CEP192	18	13087076	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	5010624	13087076	64990172	182	46336										
HRH4	0	genome.wustl.edu	37	chr18	22056805	22056805	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cttagtgaatgggccaatgaTtctagtttcagagtcttgga	11	6	3	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	18	22056805	22056805	T	C	SNP	HRH4	ENST00000256906	human	ensembl	69_37n	1	known	missense	c.452	p.I151T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Histamine_H4_recept,prints_7TM_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489	679	0	0	520	196	27.34	-	-	-	C	22056805	T	C	22056805	3	2	510	1	0	0	0	0	1	0	0	0	7409	1493	52	5	462	5	HRH4	18	22056805	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	8969729	22056805	56020443	183	46337										
ATP8B3	0	genome.wustl.edu	37	chr19	1799950	1799950	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggtgtcggggccgcaccataGacgcggccgctgatgcagca	16	13	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	1799950	1799950	G	T	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	silent	c.1548	p.V516	0.639	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	126	0	0	98	18	15.52	-	-	-	T	1799950	G	T	1799950	2	4	510	1	0	0	0	0	0	0	0	1	1200	929	33	2		2	ATP8B3	19	1799950	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		1799950	57329033	184	46338										
GIPC1	0	genome.wustl.edu	37	chr19	14589304	14589304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cgtcagggaaggcaaagtcaCccagccgttcgtccagggcc	13	14	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	14589304	14589304	C	T	SNP	GIPC1	ENST00000345425	human	ensembl	69_37n	-1	known	missense	c.926	p.G309D	0.998	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159	96	0	0	52	14	20.9	-	-	-	T	14589304	C	T	14589304	3	4	510	1	0	0	0	0	1	0	0	0	6444	507	18	4	79	4	GIPC1	19	14589304	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	12789354	14589304	44539679	185	46339										
NWD1	0	genome.wustl.edu	37	chr19	16874756	16874756	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agctgaaacaggaggttctgGgtaagggctgccccccatct	13	11	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	16874756	16874756	G	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.2251	p.G751R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	98	0	0	45	13	22.41	-	-	-	C	16874756	G	C	16874756	3	2	510	1	0	0	0	0	1	0	0	0	10854	1246	43	4	1864	4	NWD1	19	16874756	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	2285452	16874756	42254227	186	46340										
PDE4C	0	genome.wustl.edu	37	chr19	18322000	18322000	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cactctcgattgtcctccagCgtgtccagcaggtcctgtgc	10	15	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	18322000	18322000	C	T	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	silent	c.1878	p.T626	0.080	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	308	1	0.32	194	49	20.08	-	-	-	T	18322000	C	T	18322000	2	4	510	1	0	0	0	0	0	0	0	1	11714	755	27	1		1	PDE4C	19	18322000	Silent	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	1447244	18322000	40806983	187	46341										
ZNF676	0	genome.wustl.edu	37	chr19	22362986	22362986	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaggaccagctgaaggctttGccacattcttcacatttgta	9	10	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	22362986	22362986	G	T	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	silent	c.1533	p.G511	0.970	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	127	0	0	61	26	29.55	-	-	-	T	22362986	G	T	22362986	2	4	510	1	0	0	0	0	0	0	0	1	18179	1306	46	4		4	ZNF676	19	22362986	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	4040986	22362986	36765997	188	46342										
LGALS13	0	genome.wustl.edu	37	chr19	40095264	40095264	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccatacaaactgcctgtgtCtttgtctgttggttcctgcg	10	11	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	40095264	40095264	C	G	SNP	LGALS13	ENST00000221797	human	ensembl	69_37n	1	known	missense	c.38	p.S13C	0.065	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS13	HGNC	ENSG00000105198	506	0	0	391	77	16.45	-	-	-	G	40095264	C	G	40095264	3	3	510	1	0	0	0	0	1	0	0	0	8794	913	32	2	44	2	LGALS13	19	40095264	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	17732278	40095264	19033719	189	46343										
CYP2A7	0	genome.wustl.edu	37	chr19	41383175	41383175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ggggatcacgtctccaaatcTttggatctcgtggatcactg	11	10	5	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	41383175	41383175	T	C	SNP	CYP2A7	ENST00000301146	human	ensembl	69_37n	-1	known	missense	c.1081	p.R361G	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077	389	0	0	299	53	15.06	-	-	-	C	41383175	T	C	41383175	3	2	510	1	0	0	0	0	1	0	0	0	4194	1617	56	5	415	5	CYP2A7	19	41383175	Missense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	1287911	41383175	17745808	190	46344										
SYMPK	0	genome.wustl.edu	37	chr19	46341763	46341763	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagcagaggctgcaggaactCagctgtgatgtccgtgtctg	14	10	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	46341763	46341763	C	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.E400*	1.000	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	123	0	0	101	23	18.55	-	-	-	A	46341763	C	A	46341763	4	1	510	1	0	0	0	0	0	1	0	0	15531	835	29	2	2698	2	SYMPK	19	46341763	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	4958588	46341763	12787220	191	46345										
FUT2	0	genome.wustl.edu	37	chr19	49206873	49206873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aagggggtggtggccgaccgGcgatacctacagcaggccct	16	12	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	49206873	49206873	G	A	SNP	FUT2	ENST00000391876	human	ensembl	69_37n	1	known	silent	c.660	p.R220	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT2	HGNC	ENSG00000176920	146	0	0	73	13	15.12	-	-	-	A	49206873	G	A	49206873	2	1	510	1	0	0	0	0	0	0	0	1	6153	1190	42	4		4	FUT2	19	49206873	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	2865110	49206873	9922110	192	46346										
SIGLEC10	0	genome.wustl.edu	37	chr19	51920020	51920020	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggtcctggggtctgggcgtGaagctgagcactgagaagtg	18	7	1	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	51920020	51920020	G	T	SNP	SIGLEC10	ENST00000339313	human	ensembl	69_37n	-1	known	missense	c.606	p.F202L	0.067	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC10	HGNC	ENSG00000142512	677	1	0.15	415	190	31.4	-	-	-	T	51920020	G	T	51920020	3	4	510	1	0	0	0	0	1	0	0	0	14395	1281	45	2	1523	2	SIGLEC10	19	51920020	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	2713147	51920020	7208963	193	46347										
ZNF350	0	genome.wustl.edu	37	chr19	52472379	52472379	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccacatcctccagtgttatGgattcctgtaataacagtcc	7	12	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	52472379	52472379	G	C	SNP	ZNF350	ENST00000243644	human	ensembl	69_37n	-1	known	silent	c.21	p.S7	0.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683	465	0	0	174	114	39.45	-	-	-	C	52472379	G	C	52472379	2	2	510	1	0	0	0	0	0	0	0	1	17959	1335	47	4		4	ZNF350	19	52472379	Silent	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	552359	52472379	6656604	194	46348										
ZSCAN5B	0	genome.wustl.edu	37	chr19	56704353	56704353	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tctggggacgccacagaccgTggagtgtctgacccagggct	15	12	2	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	56704353	56704353	T	G	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	silent	c.69	p.P23	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	204	0	0	156	31	16.58	-	-	-	G	56704353	T	G	56704353	2	3	510	1	0	0	0	0	0	0	0	1	18330	1683	59	5		5	ZSCAN5B	19	56704353	Silent	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	4231974	56704353	2424630	195	46349										
ZNF419	0	genome.wustl.edu	37	chr19	58005131	58005131	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gaaaagccttttaagtgcaaTgaatgtgggagattctttag	11	4	1	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	58005131	58005131	T	C	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	1	known	silent	c.1209	p.N403	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	290	0	0	220	48	17.91	-	-	-	C	58005131	T	C	58005131	2	2	510	1	0	0	0	0	0	0	0	1	17992	1461	51	5		5	ZNF419	19	58005131	Silent	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	1300778	58005131	1123852	196	46350										
ZNF552	0	genome.wustl.edu	37	chr19	58319602	58319602	+	Nonsense_Mutation	SNP	T	T	A													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cttctgaccagtgtgaactcTcttatgaacacggaatgtag							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	58319602	58319602	T	A	SNP	ZNF552	ENST00000391701	human	ensembl	69_37n	-1	known	nonsense	c.1030	p.R344*	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935	470	0	0	227	44	16.24	-	-	-	A	58319602	T	A	58319602	4	1	510	1	0	0	0	0	0	1	0	0	18080	1559	54	5	197	5	ZNF552	19	58319602	Nonsense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	314471	58319602	809381	197	46351	382	2								
ZNF552	0	genome.wustl.edu	37	chr19	58319607	58319608	+	Frame_Shift_Ins	INS	-	-	GA													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	accagtgtgaactctcttatINSgaacacggaatgtagagctg							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	58319607	58319608	-	GA	INS	ZNF552	ENST00000391701	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1025_1024	p.H342fs	0.647:0.658	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935	476	0	0	236	38	13.87	-	-	-	GA	58319608	-	GA	58319607	7	5	510	1	0	1	1	0	0	0	0	0	18080	1464	51	0	202	0	ZNF552	19	58319607	Frame_Shift_Ins	INS	-	TCGA-BH-A0BZ-01A-31D-A12Q-09	5	58319607	809376	198	46352	382	2								
ZNF587	0	genome.wustl.edu	37	chr19	58352673	58352673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tgtctccctttcagtgtgggGgagctcactatagccatgga	12	10	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	19	58352673	58352673	G	A	SNP	ZNF587	ENST00000442832	human	ensembl	69_37n	1	known	missense	c.631	p.G211R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	388	0	0	166	39	18.93	-	-	-	A	58352673	G	A	58352673	3	1	510	1	0	0	0	0	1	0	0	0	18116	1247	43	4		4	ZNF587	19	58352673	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	33066	58352673	776310	199	46353										
SDCBP2	0	genome.wustl.edu	37	chr20	1300251	1300251	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cacctggtggtggggaaatgGctgttgcctggactggcagg	18	8	0	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	1300251	1300251	G	C	SNP	SDCBP2	ENST00000339987	human	ensembl	69_37n	-1	known	missense	c.107	p.A36G	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775	101	0	0	53	11	17.19	-	-	-	C	1300251	G	C	1300251	3	2	510	1	0	0	0	0	1	0	0	0	14044	1203	42	4	799	4	SDCBP2	20	1300251	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		1300251	61725269	200	46354										
SLC4A11	0	genome.wustl.edu	37	chr20	3208935	3208935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tcatggcgatcatgatgaggGgaaagatcatcttcatgtag	12	6	5	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	3208935	3208935	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.2657	p.P886L	1.000	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	92	0	0	63	14	18.18	-	-	-	A	3208935	G	A	3208935	3	1	510	1	0	0	0	0	1	0	0	0	14741	1232	43	4	107	4	SLC4A11	20	3208935	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	1908684	3208935	59816585	201	46355										
RALY	0	genome.wustl.edu	37	chr20	32663708	32663708	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	actaccggggccgtctgtcgCccgtgccagtgcccagggcg	15	16	1	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	32663708	32663708	C	A	SNP	RALY	ENST00000246194	human	ensembl	69_37n	1	known	missense	c.406	p.P136T	0.994	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	90	0	0	65	8	10.96	-	-	-	A	32663708	C	A	32663708	3	1	510	1	0	0	0	0	1	0	0	0	13102	739	26	4	420	4	RALY	20	32663708	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	29454773	32663708	30361812	202	46356										
NFS1	0	genome.wustl.edu	37	chr20	34278343	34278343	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	agccactcctacctttaggtCaatgatcccactcttctgca	5	15	3	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	34278343	34278343	C	A	SNP	NFS1	ENST00000374092	human	ensembl	69_37n	-1	known	missense	c.553	p.D185Y	0.967	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	-	no_errors	NFS1	HGNC	ENSG00000244005	285	0	0	302	37	10.91	-	-	-	A	34278343	C	A	34278343	3	1	510	1	0	0	0	0	1	0	0	0	10457	826	29	2	856	2	NFS1	20	34278343	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	1614635	34278343	28747177	203	46357										
C20orf152	0	genome.wustl.edu	37	chr20	34618474	34618474	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aagacgactaaacctcgttaTcctatttttatggcacccca	5	12	0	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	34618474	34618474	T	G	SNP	C20orf152	ENST00000373973	human	ensembl	69_37n	1	known	nonsense	c.1635	p.Y545*	0.791	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	C20orf152	HGNC	ENSG00000149646	304	0	0	456	53	10.39	-	-	-	G	34618474	T	G	34618474	4	3	510	1	0	0	0	0	0	1	0	0	2112	1442	50	5	1669	5	C20orf152	20	34618474	Nonsense_Mutation	SNP	T	TCGA-BH-A0BZ-01A-31D-A12Q-09	340131	34618474	28407046	204	46358										
PLTP	0	genome.wustl.edu	37	chr20	44527701	44527701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cagccccgatggtgaggaatCcctgtgttggggagagggga	18	8	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	44527701	44527701	C	T	SNP	PLTP	ENST00000542937	human	ensembl	69_37n	-1	known	missense	c.1421	p.G474E	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	180	0	0	136	35	20.35	-	-	-	T	44527701	C	T	44527701	3	4	510	1	0	0	0	0	1	0	0	0	12188	869	30	2	124	2	PLTP	20	44527701	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	9909227	44527701	18497819	205	46359										
KCNQ2	0	genome.wustl.edu	37	chr20	62070997	62070997	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	cgatgagggtgaaggttgccGcaaggagcctgccgttccag	16	10	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	20	62070997	62070997	G	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.881	p.A294E	0.989	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	132	1	0.75	124	85	40.48	-	-	-	T	62070997	G	T	62070997	3	4	510	1	0	0	0	0	1	0	0	0	8137	1087	38	3	1849	3	KCNQ2	20	62070997	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	17543296	62070997	954523	206	46360										
APP	0	genome.wustl.edu	37	chr21	27347382	27347382	+	Splice_Site	DEL	C	C	-													0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctcggctgcagcgagacctaCccgaggaggaacagcctgca							TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	21	27347382	27347382	C	-	DEL	APP	ENST00000346798	human	ensembl	69_37n	-1	known	splice_site_del	c.1458+1	e11+1	1.000	-	-	-	no_errors	APP	HGNC	ENSG00000142192	210	0	0	120	31	20.13	-	-	-	-	27347382	C	-	27347382	8	5	510	1	0	1	0	1	0	0	1	0	817	521	18	0	885	0	APP	21	27347382	Splice_Site	DEL	C	TCGA-BH-A0BZ-01A-31D-A12Q-09		27347382	20782513	207	46361										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45993856	45993856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ctgcccagtgacctgcgagcCcagcccctgccaatcaggct	10	18	1	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	21	45993856	45993856	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	missense	c.221	p.P74L	0.124	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	187	0	0	77	16	17.2	-	-	-	T	45993856	C	T	45993856	3	4	510	1	0	0	0	0	1	0	0	0	8564	623	22	4	223	4	KRTAP10-4	21	45993856	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	18646474	45993856	2136039	208	46362										
EMID1	0	genome.wustl.edu	37	chr22	29611547	29611547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggtgagacccacatacaagGtgatgtacaagatagtgacc	11	8	0	4			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	22	29611547	29611547	G	T	SNP	EMID1	ENST00000334018	human	ensembl	69_37n	1	known	missense	c.247	p.V83L	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_Collagen,pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMID1	HGNC	ENSG00000186998	145	0	0	113	22	16.3	-	-	-	T	29611547	G	T	29611547	3	4	510	1	0	0	0	0	1	0	0	0	5128	1261	44	4	257	4	EMID1	22	29611547	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		29611547	21693019	209	46363										
MBTPS2	0	genome.wustl.edu	37	chrX	21886678	21886678	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	attttactacactggagttgGggtgctcatcactgaagttg	11	7	2	1			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	21886678	21886678	G	C	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	missense	c.764	p.G255A	0.999	pfam_Peptidase_M50,superfamily_PDZ	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	897	0	0	434	206	32.19	-	-	-	C	21886678	G	C	21886678	3	2	510	1	0	0	0	0	1	0	0	0	9433	1232	43	4	786	4	MBTPS2	23	21886678	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09		21886678	133383882	210	46364										
DMD	0	genome.wustl.edu	37	chrX	32503137	32503137	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ccaggaacatgggtccttgtCctttctctttcagggctatg	10	11	2	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	32503137	32503137	C	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.2702	p.G901V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	715	0	0	346	180	34.22	-	-	-	A	32503137	C	A	32503137	3	1	510	1	0	0	0	0	1	0	0	0	4616	855	30	2	8834	2	DMD	23	32503137	Missense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	10616459	32503137	122767423	211	46365										
HDAC6	0	genome.wustl.edu	37	chrX	48661392	48661392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	tggaagaagacctaatcgtgGgactgcaagggatggtgagc	16	6	0	3			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	48661392	48661392	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.250	p.G84R	0.196	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	203	1	0.49	221	33	12.94	-	-	-	A	48661392	G	A	48661392	3	1	510	1	0	0	0	0	1	0	0	0	7062	1233	43	4	214	4	HDAC6	23	48661392	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	16158255	48661392	106609168	212	46366										
HUWE1	0	genome.wustl.edu	37	chrX	53617397	53617397	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	gccctttgatccattggaatAtcctgtcccagagacatagc	8	12	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	53617397	53617397	A	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.4158	p.D1386E	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	483	0	0	363	82	18.39	-	-	-	T	53617397	A	T	53617397	3	4	510	1	0	0	0	0	1	0	0	0	7515	446	16	5	9166	5	HUWE1	23	53617397	Missense_Mutation	SNP	A	TCGA-BH-A0BZ-01A-31D-A12Q-09	4956005	53617397	101653163	213	46367										
NLGN3	0	genome.wustl.edu	37	chrX	70384048	70384048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	aactatgggctccttgaccaGatccaggccctccgctgggt	11	14	0	2			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	70384048	70384048	G	C	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.783	p.Q261H	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	282	0	0	180	43	19.28	-	-	-	C	70384048	G	C	70384048	3	2	510	1	0	0	0	0	1	0	0	0	10535	933	33	2	801	2	NLGN3	23	70384048	Missense_Mutation	SNP	G	TCGA-BH-A0BZ-01A-31D-A12Q-09	16766651	70384048	84886512	214	46368										
ITM2A	0	genome.wustl.edu	37	chrX	78616643	78616643	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107476635514019	23	0.250745699741526	1.35871064843848	1.78941655359566	0.98857276119403	0.318004070968039	0.930327025915261	0	ttggggaagtgtctaatcttCcagcatttatcaatggcacg	10	8	3	0			TCGA-BH-A0BZ-01A-31D-A12Q-09	TCGA-BH-A0BZ-11A-61D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f07765a-3f2b-4b6f-88ef-0d7aab17a758	be00304b-7a7a-464c-b5f7-d784d0c2c0ab	X	78616643	78616643	C	T	SNP	ITM2A	ENST00000373298	human	ensembl	69_37n	-1	known	nonsense	c.735	p.W245*	0.995	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2A	HGNC	ENSG00000078596	142	0	0	120	16	11.76	-	-	-	T	78616643	C	T	78616643	4	4	510	1	0	0	0	0	0	1	0	0	7966	856	30	2	60	2	ITM2A	23	78616643	Nonsense_Mutation	SNP	C	TCGA-BH-A0BZ-01A-31D-A12Q-09	8232595	78616643	76653917	215	46369										
CCDC27	0	genome.wustl.edu	37	chr1	3672038	3672038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	caggttcacccactgaggccGatttgtccggagagattgac	12	11	1	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	3672038	3672038	G	A	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	missense	c.460	p.D154N	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	101	0	0	121	41	25.15	-	-	-	A	3672038	G	A	3672038	3	1	511	1	0	0	0	0	1	0	0	0	2827	1058	37	1	470	1	CCDC27	1	3672038	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		3672038	245578583	1	46370										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	38	0	0	12	4	25	-	-	-	A	12980232	G	A	12980232	2	1	511	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	9308194	12980232	236270389	2	46371										
GRIK3	0	genome.wustl.edu	37	chr1	37307422	37307422	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cgtcctccaccagccggatcTcataggagaaaccaaggatg	10	13	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	37307422	37307422	T	A	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	missense	c.1445	p.E482V	1.000	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	104	0	0	105	12	10.17	-	-	-	A	37307422	T	A	37307422	3	1	511	1	0	0	0	0	1	0	0	0	6826	1551	54	5	1342	5	GRIK3	1	37307422	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09	24327190	37307422	211943199	3	46372										
USP1	0	genome.wustl.edu	37	chr1	62916175	62916175	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ataggtaagccagaaccattGaatgaggaggaagcaagggg	15	5	0	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	62916175	62916175	G	T	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	missense	c.1881	p.L627F	0.762	pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	184	0	0	152	25	14.12	-	-	-	T	62916175	G	T	62916175	3	4	511	1	0	0	0	0	1	0	0	0	17137	1281	45	2	1911	2	USP1	1	62916175	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	25608753	62916175	186334446	4	46373										
UBQLN4	0	genome.wustl.edu	37	chr1	156011319	156011319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aaagctggatcatctgctgcAtgagttgctgctgggcgctg	14	9	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	156011319	156011319	A	G	SNP	UBQLN4	ENST00000368309	human	ensembl	69_37n	-1	known	missense	c.1610	p.M537T	1.000	NULL	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803	70	0	0	23	11	32.35	-	-	-	G	156011319	A	G	156011319	3	3	511	1	0	0	0	0	1	0	0	0	16996	217	8	5	203	5	UBQLN4	1	156011319	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	93095144	156011319	93239302	5	46374										
RGS4	0	genome.wustl.edu	37	chr1	163044344	163044344	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gcttccctggtccctcagtgTgcctaattctcacctgaagg	9	14	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	163044344	163044344	T	A	SNP	RGS4	ENST00000421743	human	ensembl	69_37n	1	known	nonsense	c.903	p.C301*	0.987	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS4	HGNC	ENSG00000117152	529	0	0	252	76	23.1	-	-	-	A	163044344	T	A	163044344	4	1	511	1	0	0	0	0	0	1	0	0	13391	1702	59	5	925	5	RGS4	1	163044344	Nonsense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09	7033025	163044344	86206277	6	46375										
POU2F1	0	genome.wustl.edu	37	chr1	167382293	167382293	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ctcagtctgaatccagggacCctgagcggtgctctcagccc	11	15	3	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	167382293	167382293	C	A	SNP	POU2F1	ENST00000367866	human	ensembl	69_37n	1	known	silent	c.1932	p.T644	0.990	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	130	0	0	157	36	18.65	-	-	-	A	167382293	C	A	167382293	2	1	511	1	0	0	0	0	0	0	0	1	12344	610	22	4		4	POU2F1	1	167382293	Silent	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	4337949	167382293	81868328	7	46376										
LAMC2	0	genome.wustl.edu	37	chr1	183177174	183177174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	accggcacagagaaagggacCgctgtttgccctgcaattgt	12	11	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	183177174	183177174	C	T	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.238	p.R80C	0.991	superfamily_Growth_fac_rcpt,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	562	1	0.18	665	138	17.16	-	-	-	T	183177174	C	T	183177174	3	4	511	1	0	0	0	0	1	0	0	0	8669	652	23	1	244	1	LAMC2	1	183177174	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	15794881	183177174	66073447	8	46377										
HHAT	0	genome.wustl.edu	37	chr1	210573999	210573999	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gaggctgcagggtgtggaagAagttaaggtaagtgttttcc	16	4	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	210573999	210573999	A	C	SNP	HHAT	ENST00000391905	human	ensembl	69_37n	1	known	missense	c.461	p.E154A	0.994	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392	55	0	0	72	21	22.58	-	-	-	C	210573999	A	C	210573999	3	2	511	1	0	0	0	0	1	0	0	0	7140	246	9	5	573	5	HHAT	1	210573999	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	27396825	210573999	38676622	9	46378										
NSL1	0	genome.wustl.edu	37	chr1	212911865	212911865	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ttttcctggaagcagtctctGttggtgtggtttctatctgt	11	7	3	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	1	212911865	212911865	G	C	SNP	NSL1	ENST00000366977	human	ensembl	69_37n	-1	known	missense	c.731	p.T244R	0.976	NULL	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697	165	0	0	200	49	19.68	-	-	-	C	212911865	G	C	212911865	3	2	511	1	0	0	0	0	1	0	0	0	10746	1377	48	4	118	4	NSL1	1	212911865	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	2337866	212911865	36338756	10	46379										
VIT	0	genome.wustl.edu	37	chr2	36994370	36994370	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ccaaggccatccccttctgcTgcttctaccaccagcatccc	5	20	2	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	2	36994370	36994370	T	C	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	silent	c.621	p.A207	0.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	38	0	0	75	10	11.76	-	-	-	C	36994370	T	C	36994370	2	2	511	1	0	0	0	0	0	0	0	1	17268	1567	55	5		5	VIT	2	36994370	Silent	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		36994370	206205003	11	46380										
LIMS1	0	genome.wustl.edu	37	chr2	109293130	109293130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tatgagaggaaaggcctggcAtattgtgaaactcactataa	10	6	1	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	2	109293130	109293130	A	G	SNP	LIMS1	ENST00000542845	human	ensembl	69_37n	1	known	silent	c.900	p.A300	0.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756	37	0	0	34	10	22.73	-	-	-	G	109293130	A	G	109293130	2	3	511	1	0	0	0	0	0	0	0	1	8858	204	8	5		5	LIMS1	2	109293130	Silent	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	72298760	109293130	133906243	12	46381										
POTEF	0	genome.wustl.edu	37	chr2	130832165	130832165	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aggaagcaaggctggaagagCgcctcggggcagcggaaccg	18	10	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	2	130832165	130832165	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2880	p.A960	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	28	0	0	32	12	27.27	-	-	-	T	130832165	C	T	130832165	2	4	511	1	0	0	0	0	0	0	0	1	12339	755	27	1		1	POTEF	2	130832165	Silent	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	21539035	130832165	112367208	13	46382										
FBXO40	0	genome.wustl.edu	37	chr3	121340395	121340395	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cctggtaataagctgccaccTgctctgtggtgccaccttcc	9	15	1	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	3	121340395	121340395	T	G	SNP	FBXO40	ENST00000338040	human	ensembl	69_37n	1	known	missense	c.119	p.L40R	0.780	superfamily_TRAF-like	superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833	183	0	0	80	15	15.62	-	-	-	G	121340395	T	G	121340395	3	3	511	1	0	0	0	0	1	0	0	0	5795	1580	55	5	125	5	FBXO40	3	121340395	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		121340395	76682035	14	46383										
ATOH1	0	genome.wustl.edu	37	chr4	94750648	94750648	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	atgttatcccgtcgttcaacAacgacaagaagctgtccaaa	7	11	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	4	94750648	94750648	A	C	SNP	ATOH1	ENST00000306011	human	ensembl	69_37n	1	known	missense	c.571	p.N191H	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH1	HGNC	ENSG00000172238	50	0	0	45	9	16.67	-	-	-	C	94750648	A	C	94750648	3	2	511	1	0	0	0	0	1	0	0	0	1116	130	5	5	573	5	ATOH1	4	94750648	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09		94750648	96403628	15	46384										
CAMK2D	0	genome.wustl.edu	37	chr4	114438800	114438800	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ggataccccacaagtagaatAtagagaatgacacctggagg	11	8	0	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	4	114438800	114438800	A	T	SNP	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	nonsense	c.615	p.Y205*	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	131	0	0	196	42	17.65	-	-	-	T	114438800	A	T	114438800	4	4	511	1	0	0	0	0	0	1	0	0	2626	456	16	5	1019	5	CAMK2D	4	114438800	Nonsense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	19688152	114438800	76715476	16	46385										
CCDC110	0	genome.wustl.edu	37	chr4	186379415	186379415	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	atgctgattacaaattttatCacttaaacttaaatattctc	2	7	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	4	186379415	186379415	C	T	SNP	CCDC110	ENST00000307588	human	ensembl	69_37n	-1	known	missense	c.2326	p.D776N	0.801	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491	125	0	0	60	18	23.08	-	-	-	T	186379415	C	T	186379415	3	4	511	1	0	0	0	0	1	0	0	0	2772	826	29	2	183	2	CCDC110	4	186379415	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	71940615	186379415	4774861	17	46386										
SEMA5A	0	genome.wustl.edu	37	chr5	9197331	9197331	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	agccaggccgagcgcgagttTtcttggtacttgaagggccc	14	11	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	5	9197331	9197331	T	A	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.1017	p.E339D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	30	0	0	54	20	27.03	-	-	-	A	9197331	T	A	9197331	3	1	511	1	0	0	0	0	1	0	0	0	14125	1838	64	5	2263	5	SEMA5A	5	9197331	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		9197331	171717929	18	46387										
C5orf54	0	genome.wustl.edu	37	chr5	159822112	159822112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gctttttttgtgcatctggtCccaaaactatttgtgctatt	7	8	1	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	5	159822112	159822112	C	T	SNP	C5orf54	ENST00000408953	human	ensembl	69_37n	-1	known	missense	c.386	p.G129E	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	C5orf54	HGNC	ENSG00000221886	111	0	0	134	35	20.71	-	-	-	T	159822112	C	T	159822112	3	4	511	1	0	0	0	0	1	0	0	0	2331	855	30	2	1402	2	C5orf54	5	159822112	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	150624781	159822112	21093148	19	46388										
RANBP17	0	genome.wustl.edu	37	chr5	170380678	170380678	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ataccagtacagatgagcatGatgctatggatggagaatta	11	5	0	4			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	5	170380678	170380678	G	A	SNP	RANBP17	ENST00000523189	human	ensembl	69_37n	1	known	missense	c.1546	p.D516N	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	82	0	0	159	42	20.9	-	-	-	A	170380678	G	A	170380678	3	1	511	1	0	0	0	0	1	0	0	0	13110	1290	45	2	1596	2	RANBP17	5	170380678	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	10558566	170380678	10534582	20	46389										
OR10C1	0	genome.wustl.edu	37	chr6	29407949	29407949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tgctggtctccactgatgctGccctccagtcccctatgtac	8	16	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	6	29407949	29407949	G	A	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	missense	c.157	p.A53T	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	395	1	0.25	364	51	12.23	-	-	-	A	29407949	G	A	29407949	3	1	511	1	0	0	0	0	1	0	0	0	10971	1319	46	4	159	4	OR10C1	6	29407949	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		29407949	141707118	21	46390										
C6orf170	0	genome.wustl.edu	37	chr6	121481215	121481215	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	agcagtttggcaatggatatGatgaaaacattggccaagga	12	5	0	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	6	121481215	121481215	G	A	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	missense	c.2837	p.S946L	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	99	0	0	148	25	14.37	-	-	-	A	121481215	G	A	121481215	3	1	511	1	0	0	0	0	1	0	0	0	2365	1294	45	2	1095	2	C6orf170	6	121481215	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	92073266	121481215	49633852	22	46391										
EYA4	0	genome.wustl.edu	37	chr6	133777745	133777745	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gaacagcagtgaaaccacagCcacgactggagatggagcgc	13	11	0	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	6	133777745	133777745	C	T	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	missense	c.329	p.A110V	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	223	0	0	276	49	15.08	-	-	-	T	133777745	C	T	133777745	3	4	511	1	0	0	0	0	1	0	0	0	5368	739	26	4	347	4	EYA4	6	133777745	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	12296530	133777745	37337322	23	46392										
STX11	0	genome.wustl.edu	37	chr6	144507849	144507849	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gggacgatgagtttgactcgCcccacgaggacatcgtgttc	13	11	0	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	6	144507849	144507849	C	A	SNP	STX11	ENST00000367568	human	ensembl	69_37n	1	known	missense	c.85	p.P29T	0.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604	20	0	0	68	27	28.12	-	-	-	A	144507849	C	A	144507849	3	1	511	1	0	0	0	0	1	0	0	0	15428	739	26	4	87	4	STX11	6	144507849	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	10730104	144507849	26607218	24	46393										
FBXO5	0	genome.wustl.edu	37	chr6	153293436	153293436	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ttcattgtgtcgactataagTagaacctttctgatcacctt	6	9	3	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	6	153293436	153293436	T	G	SNP	FBXO5	ENST00000229758	human	ensembl	69_37n	-1	known	missense	c.1063	p.T355P	0.058	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO5	HGNC	ENSG00000112029	83	0	0	119	15	11.03	-	-	-	G	153293436	T	G	153293436	3	3	511	1	0	0	0	0	1	0	0	0	5804	1638	57	5	288	5	FBXO5	6	153293436	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09	8785587	153293436	17821631	25	46394										
FERD3L	0	genome.wustl.edu	37	chr7	19184943	19184943	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ggacaggtctgcgacgaagtCcagcaccgtagtgtccacgc	13	13	1	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	7	19184943	19184943	C	G	SNP	FERD3L	ENST00000275461	human	ensembl	69_37n	-1	known	missense	c.43	p.D15H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FERD3L	HGNC	ENSG00000146618	17	0	0	32	16	33.33	-	-	-	G	19184943	C	G	19184943	3	3	511	1	0	0	0	0	1	0	0	0	5862	855	30	2	461	2	FERD3L	7	19184943	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09		19184943	139953720	26	46395										
PLOD3	0	genome.wustl.edu	37	chr7	100856125	100856126	+	Frame_Shift_Ins	INS	-	-	C													0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tggcacccccacctcacctgINScccccccgggagtgtcctcc							TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	7	100856125	100856126	-	C	INS	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	frame_shift_ins	c.877_876	p.Q292fs	1.000:1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	14	0	0	9	3	25	-	-	-	C	100856126	-	C	100856125	7	5	511	1	0	1	1	0	0	0	0	0	12177	1328	46	0	1387	0	PLOD3	7	100856125	Frame_Shift_Ins	INS	-	TCGA-BH-A0C0-01A-21W-A071-09	81671182	100856125	58282538	27	46396										
CREB3L2	0	genome.wustl.edu	37	chr7	137600703	137600703	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tctgtaactggctctgtcttGatggatgttgaagggaagtc	13	6	3	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	7	137600703	137600703	G	C	SNP	CREB3L2	ENST00000330387	human	ensembl	69_37n	-1	known	missense	c.375	p.I125M	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158	63	0	0	65	8	10.96	-	-	-	C	137600703	G	C	137600703	3	2	511	1	0	0	0	0	1	0	0	0	3887	1280	45	2	1227	2	CREB3L2	7	137600703	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	36744578	137600703	21537960	28	46397										
SORBS3	0	genome.wustl.edu	37	chr8	22419432	22419432	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ccacaggcccggcccggcaaCatcttccagtgggtgagcac	12	16	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	8	22419432	22419432	C	A	SNP	SORBS3	ENST00000240123	human	ensembl	69_37n	1	known	missense	c.572	p.T191K	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896	11	0	0	5	4	44.44	-	-	-	A	22419432	C	A	22419432	3	1	511	1	0	0	0	0	1	0	0	0	15018	478	17	4	594	4	SORBS3	8	22419432	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09		22419432	123944590	29	46398										
TACC1	0	genome.wustl.edu	37	chr8	38677317	38677317	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tcaggcaaggctctgccttcCagcccgccagacgccctcca	9	19	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	8	38677317	38677317	C	A	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	silent	c.555	p.S185	0.001	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	43	0	0	70	22	23.91	-	-	-	A	38677317	C	A	38677317	2	1	511	1	0	0	0	0	0	0	0	1	15593	581	21	4		4	TACC1	8	38677317	Silent	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	16257885	38677317	107686705	30	46399										
TAF1L	0	genome.wustl.edu	37	chr9	32633233	32633233	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cctgtcttgtccgaatgatcAgaaaatcagtttctggcatc	8	10	4	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	9	32633233	32633233	A	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2345	p.L782Q	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	242	0	0	214	38	15.08	-	-	-	T	32633233	A	T	32633233	3	4	511	1	0	0	0	0	1	0	0	0	15615	188	7	5	3139	5	TAF1L	9	32633233	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09		32633233	108580198	31	46400										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69385951	69385951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gcgccaatccaaaccttaagGatatctacggcaacactgct	7	13	1	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	9	69385951	69385951	G	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.388	p.D130N	0.161	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	40	0	0	51	20	28.17	-	-	-	A	69385951	G	A	69385951	3	1	511	1	0	0	0	0	1	0	0	0	650	1174	41	2	398	2	ANKRD20A4	9	69385951	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	36752718	69385951	71827480	32	46401										
OR1L8	0	genome.wustl.edu	37	chr9	125329851	125329851	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gatctcttgctcataagcttCctcaggccctgtttcaggtc	8	13	4	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	9	125329851	125329851	C	A	SNP	OR1L8	ENST00000304865	human	ensembl	69_37n	-1	known	missense	c.906	p.R302S	0.147	pfam_7TM_GPCR_olfarory/Srsx	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1L8	HGNC	ENSG00000171496	135	0	0	161	64	28.44	-	-	-	A	125329851	C	A	125329851	3	1	511	1	0	0	0	0	1	0	0	0	11040	854	30	2	27	2	OR1L8	9	125329851	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	55943900	125329851	15883580	33	46402										
FRMD4A	0	genome.wustl.edu	37	chr10	13804668	13804668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aaacaccacttcgctgtcaaCgtcaataagctcctgaaagg	7	12	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	10	13804668	13804668	C	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.397	p.V133F	0.985	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	178	1	0.56	55	10	15.38	-	-	-	A	13804668	C	A	13804668	3	1	511	1	0	0	0	0	1	0	0	0	6100	536	19	3	2794	3	FRMD4A	10	13804668	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09		13804668	121730079	34	46403										
RET	0	genome.wustl.edu	37	chr10	43597801	43597801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tctctgcagaccgcggctttCccctgctcaccgtctacctc	7	19	3	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	10	43597801	43597801	C	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.349	p.P117T	0.993	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	64	0	0	41	6	12.5	-	-	-	A	43597801	C	A	43597801	3	1	511	1	0	0	0	0	1	0	0	0	13318	855	30	2	359	2	RET	10	43597801	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	29793133	43597801	91936946	35	46404										
GPAM	0	genome.wustl.edu	37	chr10	113915699	113915699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gatactcaggttctggaacaGgaccactgaagttgtgaaca	11	8	2	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	10	113915699	113915699	G	T	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.2234	p.P745H	0.989	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	134	0	0	137	40	22.6	-	-	-	T	113915699	G	T	113915699	3	4	511	1	0	0	0	0	1	0	0	0	6638	1000	35	4	264	4	GPAM	10	113915699	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	70317898	113915699	21619048	36	46405										
ODZ4	0	genome.wustl.edu	37	chr11	78423693	78423693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aagacccgccggctgttgctGtcagaaaggaagacggcccc	13	13	1	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	11	78423693	78423693	G	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.3888	p.D1296E	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	155	0	0	111	39	26	-	-	-	T	78423693	G	T	78423693	3	4	511	1	0	0	0	0	1	0	0	0	10910	1368	48	4	4457	4	ODZ4	11	78423693	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		78423693	56582823	37	46406										
MMP8	0	genome.wustl.edu	37	chr11	102589268	102589268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gtgagcgagccccaaagaatGgccaaattcatgagcagcaa	11	10	1	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	11	102589268	102589268	G	T	SNP	MMP8	ENST00000236826	human	ensembl	69_37n	-1	known	missense	c.661	p.H221N	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP8	HGNC	ENSG00000118113	103	0	0	69	16	18.82	-	-	-	T	102589268	G	T	102589268	3	4	511	1	0	0	0	0	1	0	0	0	9740	1348	47	4	766	4	MMP8	11	102589268	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	24165575	102589268	32417248	38	46407										
BCL9L	0	genome.wustl.edu	37	chr11	118770742	118770742	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ggtagagcggggtggagctgGgcatggcgtacttggacatc	19	7	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	11	118770742	118770742	G	C	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.3290	p.P1097R	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	26	0	0	19	5	20.83	-	-	-	C	118770742	G	C	118770742	3	2	511	1	0	0	0	0	1	0	0	0	1386	1232	43	4	1217	4	BCL9L	11	118770742	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	16181474	118770742	16235774	39	46408										
AKAP3	0	genome.wustl.edu	37	chr12	4747364	4747364	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	agtcaaccttttctgacatcTggaagcaggggaaaaaaatg	10	7	3	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	4747364	4747364	T	G	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	splice_site	c.1-2	e1-2	0.985	-	-	-	no_errors	AKAP3	HGNC	ENSG00000111254	189	0	0	252	69	21.5	-	-	-	G	4747364	T	G	4747364	5	3	511	1	0	0	0	0	0	0	1	0	452	1594	55	5	2574	5	AKAP3	12	4747364	Splice_Site	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		4747364	129104531	40	46409										
KCNA1	0	genome.wustl.edu	37	chr12	5021590	5021590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tgcagtgtactttgccgaggCggaagaagctgagtcgcact	14	9	0	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	5021590	5021590	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.1046	p.A349V	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	286	0	0	162	40	19.8	-	-	-	T	5021590	C	T	5021590	3	4	511	1	0	0	0	0	1	0	0	0	8055	768	27	1	1048	1	KCNA1	12	5021590	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	274226	5021590	128830305	41	46410										
NUAK1	0	genome.wustl.edu	37	chr12	106461617	106461617	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	agagtcatggagggcatcacAgtcacacacgctgctcttat	10	11	4	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	106461617	106461617	A	T	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.949	p.C317S	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	41	0	0	51	29	36.25	-	-	-	T	106461617	A	T	106461617	3	4	511	1	0	0	0	0	1	0	0	0	10785	188	7	5	1040	5	NUAK1	12	106461617	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	101440027	106461617	27390278	42	46411										
RASAL1	0	genome.wustl.edu	37	chr12	113552621	113552621	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tcaccgggtgcggcccaggtCcatcttgcagggatccagct	13	14	2	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	113552621	113552621	C	G	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.1165	p.D389H	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	73	0	0	67	36	34.95	-	-	-	G	113552621	C	G	113552621	3	3	511	1	0	0	0	0	1	0	0	0	13146	855	30	2	1289	2	RASAL1	12	113552621	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	7091004	113552621	20299274	43	46412										
SPPL3	0	genome.wustl.edu	37	chr12	121248611	121248611	+	Splice_Site	SNP	C	C	A													0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ccccatttgagaatatcttaCctgaaactaccatagactat							TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	121248611	121248611	C	A	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	splice_site	c.101+1	e2+1	1.000	-	-	-	no_errors	SPPL3	HGNC	ENSG00000157837	167	0	0	168	53	23.98	-	-	-	A	121248611	C	A	121248611	5	1	511	1	0	0	0	0	0	0	1	0	15181	521	18	4	1092	4	SPPL3	12	121248611	Splice_Site	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	7695990	121248611	12603284	44	46413	383	2								
SPPL3	0	genome.wustl.edu	37	chr12	121248612	121248612	+	Missense_Mutation	SNP	C	C	A													0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cccatttgagaatatcttacCtgaaactaccatagactata							TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	12	121248612	121248612	C	A	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	missense	c.101	p.R34M	1.000	NULL	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	166	0	0	169	54	24.22	-	-	-	A	121248612	C	A	121248612	3	1	511	1	0	0	0	0	1	0	0	0	15181	695	24	4	1093	4	SPPL3	12	121248612	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	1	121248612	12603283	45	46414	383	2								
ALG5	0	genome.wustl.edu	37	chr13	37569662	37569662	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ttctggcctttggcatttaaGaagaatttctcttcttcatg	7	8	4	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	13	37569662	37569662	G	T	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.138	p.F46L	0.974	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	102	0	0	55	20	26.67	-	-	-	T	37569662	G	T	37569662	3	4	511	1	0	0	0	0	1	0	0	0	521	933	33	2	872	2	ALG5	13	37569662	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		37569662	77600216	46	46415										
CKAP2	0	genome.wustl.edu	37	chr13	53035596	53035596	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gaaactttcagccactatacCtaaagccacaaaacctcagc	4	14	2	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	13	53035596	53035596	C	A	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	missense	c.638	p.P213H	0.024	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	167	0	0	73	11	13.1	-	-	-	A	53035596	C	A	53035596	3	1	511	1	0	0	0	0	1	0	0	0	3472	681	24	4	652	4	CKAP2	13	53035596	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	15465934	53035596	62134282	47	46416										
COL4A1	0	genome.wustl.edu	37	chr13	110847369	110847369	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aaaaaaatcaaaatttcttaCctttctctccaatttcgcct	1	11	3	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	13	110847369	110847369	C	A	SNP	COL4A1	ENST00000375820	human	ensembl	69_37n	-1	known	splice_site	c.1381+1	e22+1	1.000	-	-	-	no_errors	COL4A1	HGNC	ENSG00000187498	61	0	0	48	10	16.95	-	-	-	A	110847369	C	A	110847369	5	1	511	1	0	0	0	0	0	0	1	0	3719	521	18	4	3751	4	COL4A1	13	110847369	Splice_Site	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	57811773	110847369	4322509	48	46417										
OR4N2	0	genome.wustl.edu	37	chr14	20296167	20296167	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tgtcccacaggtcatcaagcTggcctgcaccgacacatttg	9	14	2	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	14	20296167	20296167	T	A	SNP	OR4N2	ENST00000315947	human	ensembl	69_37n	1	known	missense	c.560	p.L187Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	441	0	0	689	95	12.09	-	-	-	A	20296167	T	A	20296167	3	1	511	1	0	0	0	0	1	0	0	0	11150	1580	55	5	562	5	OR4N2	14	20296167	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		20296167	87053373	49	46418										
ERO1L	0	genome.wustl.edu	37	chr14	53119001	53119001	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	atccccagcaaaaaatgaatTctcatcaaaatgcaaaggaa	5	9	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	14	53119001	53119001	T	C	SNP	ERO1L	ENST00000395686	human	ensembl	69_37n	-1	known	missense	c.1081	p.N361D	1.000	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	-	no_errors	ERO1L	HGNC	ENSG00000197930	72	0	0	102	13	11.3	-	-	-	C	53119001	T	C	53119001	3	2	511	1	0	0	0	0	1	0	0	0	5276	1783	62	5	341	5	ERO1L	14	53119001	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09	32822834	53119001	54230539	50	46419										
UBE3A	0	genome.wustl.edu	37	chr15	25601182	25601182	+	Frame_Shift_Del	DEL	C	C	-													0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cccttcatactccaataaatCttttaaactctgatatagaa							TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	15	25601182	25601182	C	-	DEL	UBE3A	ENST00000397954	human	ensembl	69_37n	-1	known	frame_shift_del	c.1990	p.D664fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	126	0	0	190	27	12.33	-	-	-	-	25601182	C	-	25601182	7	5	511	1	0	1	0	1	0	0	0	0	16976	913	32	0	657	0	UBE3A	15	25601182	Frame_Shift_Del	DEL	C	TCGA-BH-A0C0-01A-21W-A071-09		25601182	76930210	51	46420										
ITGA11	0	genome.wustl.edu	37	chr15	68643690	68643690	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	actccccatctgtgatgacaAtcatcaccttcttggctcct	5	15	4	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	15	68643690	68643690	A	G	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.800	p.I267T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	49	0	0	55	12	17.65	-	-	-	G	68643690	A	G	68643690	3	3	511	1	0	0	0	0	1	0	0	0	7928	101	4	5	2858	5	ITGA11	15	68643690	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	43042508	68643690	33887702	52	46421										
ACSM3	0	genome.wustl.edu	37	chr16	20788842	20788842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	caaatgtgaaaatctgcactCcaagctgattgtatcagaga	8	8	2	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	16	20788842	20788842	C	T	SNP	ACSM3	ENST00000289416	human	ensembl	69_37n	1	known	missense	c.578	p.S193F	0.750	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187	53	0	0	91	18	16.51	-	-	-	T	20788842	C	T	20788842	3	4	511	1	0	0	0	0	1	0	0	0	185	855	30	2	588	2	ACSM3	16	20788842	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09		20788842	69565911	53	46422										
MBTPS1	0	genome.wustl.edu	37	chr16	84088111	84088111	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	atgagctgcgggcgcttcacCctgggcttcctccgcttcgg	13	15	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	16	84088111	84088111	C	A	SNP	MBTPS1	ENST00000343411	human	ensembl	69_37n	-1	known	missense	c.3102	p.R1034S	0.994	NULL	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943	33	0	0	14	6	30	-	-	-	A	84088111	C	A	84088111	3	1	511	1	0	0	0	0	1	0	0	0	9432	622	22	4	60	4	MBTPS1	16	84088111	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09	63299269	84088111	6266642	54	46423										
SMYD4	0	genome.wustl.edu	37	chr17	1703856	1703856	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tttgctgtctaggccgtgatGcggtggtggcagttctcctg	15	9	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	17	1703856	1703856	G	C	SNP	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	missense	c.832	p.H278D	0.000	pfam_SET_dom	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	145	0	0	99	11	10	-	-	-	C	1703856	G	C	1703856	3	2	511	1	0	0	0	0	1	0	0	0	14913	1319	46	4	1610	4	SMYD4	17	1703856	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		1703856	79491354	55	46424										
TP53	0	genome.wustl.edu	37	chr17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-													0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	agaatgcaagaagcccagacGgaaaccgtagctgccctggt							TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	17	7579359	7579359	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.328	p.R110fs	0.028	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	200	0	0	146	67	31.31	-	-	-	-	7579359	G	-	7579359	7	5	511	1	0	1	0	1	0	0	0	0	16477	1116	39	0	974	0	TP53	17	7579359	Frame_Shift_Del	DEL	G	TCGA-BH-A0C0-01A-21W-A071-09	5875503	7579359	73615851	56	46425										
ARL17B	0	genome.wustl.edu	37	chr17	44430254	44430254	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ggctgccaacatcccagacaGcgaaggtgttatttttatat	9	9	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	17	44430254	44430254	G	C	SNP	ARL17B	ENST00000450673	human	ensembl	69_37n	-1	known	missense	c.191	p.A64G	1.000	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL17B	HGNC	ENSG00000228696	9	0	0	51	25	32.89	-	-	-	C	44430254	G	C	44430254	3	2	511	1	0	0	0	0	1	0	0	0	936	971	34	4	472	4	ARL17B	17	44430254	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	36850895	44430254	36764956	57	46426										
TTLL6	0	genome.wustl.edu	37	chr17	46862448	46862448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gcttggggaaaacagagctgGcctcctccgtgggagcctcc	14	13	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	17	46862448	46862448	G	T	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	missense	c.1877	p.A626D	0.001	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	177	0	0	193	33	14.6	-	-	-	T	46862448	G	T	46862448	3	4	511	1	0	0	0	0	1	0	0	0	16828	1203	42	4	810	4	TTLL6	17	46862448	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	2432194	46862448	34332762	58	46427										
AMZ2	0	genome.wustl.edu	37	chr17	66246405	66246405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cccagtgcttgtatcacagtAtgagaaattaaatgctgggg	11	7	1	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	17	66246405	66246405	A	G	SNP	AMZ2	ENST00000359904	human	ensembl	69_37n	1	known	missense	c.77	p.Y26C	0.993	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ2	HGNC	ENSG00000196704	257	0	0	179	24	11.82	-	-	-	G	66246405	A	G	66246405	3	3	511	1	0	0	0	0	1	0	0	0	597	449	16	5	79	5	AMZ2	17	66246405	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	19383957	66246405	14948805	59	46428										
ABCA9	0	genome.wustl.edu	37	chr17	66982401	66982401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tcaggttgggccacagcgcaTtctcctgagggcagtacccc	12	14	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	17	66982401	66982401	T	C	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.4112	p.N1371S	0.985	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	205	0	0	247	137	35.68	-	-	-	C	66982401	T	C	66982401	3	2	511	1	0	0	0	0	1	0	0	0	39	1493	52	5	794	5	ABCA9	17	66982401	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09	735996	66982401	14212809	60	46429										
ZNF397	0	genome.wustl.edu	37	chr18	32822449	32822449	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ccaagaatggctgtggaatcTggagtgatttcaaccctgat	11	8	2	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	18	32822449	32822449	T	A	SNP	ZNF397	ENST00000588119	human	ensembl	69_37n	1	putative	missense	c.13	p.W5R	0.440	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF397	HGNC	ENSG00000186812	62	0	0	88	14	13.73	-	-	-	A	32822449	T	A	32822449	3	1	511	1	0	0	0	0	1	0	0	0	17979	1567	55	5	17	5	ZNF397	18	32822449	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		32822449	45254799	61	46430										
MUC16	0	genome.wustl.edu	37	chr19	9019327	9019327	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	gaggttccaaggtccactgtGgaggtcccaggagctgagaa	15	9	0	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	19	9019327	9019327	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.37560	p.S12520	0.091	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	232	0	0	217	26	10.7	-	-	-	C	9019327	G	C	9019327	2	2	511	1	0	0	0	0	0	0	0	1	10045	1335	47	4		4	MUC16	19	9019327	Silent	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		9019327	50109656	62	46431										
FCGBP	0	genome.wustl.edu	37	chr19	40377034	40377034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-11A-21W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	c300b8f1-4a58-4c24-87ed-07654388f249	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	19	0	0	12	9	40.91	-	-	-	A	40377034	G	A	40377034	2	1	511	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40377034	Silent	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09	31357707	40377034	18751949	63	46432										
TRPC4AP	0	genome.wustl.edu	37	chr20	33600860	33600860	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cctcaaaaactgtatcttcaAggtgatgtcctgaaacacat	6	10	3	2			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	20	33600860	33600860	A	T	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	missense	c.1360	p.L454M	1.000	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	44	0	0	46	10	17.86	-	-	-	T	33600860	A	T	33600860	3	4	511	1	0	0	0	0	1	0	0	0	16677	69	3	5	1069	5	TRPC4AP	20	33600860	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09		33600860	29424660	64	46433										
TRAPPC10	0	genome.wustl.edu	37	chr21	45499985	45499985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	ccaggagatacttgactttgCcagccagccgtcagacagcc	10	14	1	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	21	45499985	45499985	C	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.1700	p.A567V	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	39	0	0	87	12	12	-	-	-	T	45499985	C	T	45499985	3	4	511	1	0	0	0	0	1	0	0	0	16553	739	26	4	1750	4	TRAPPC10	21	45499985	Missense_Mutation	SNP	C	TCGA-BH-A0C0-01A-21W-A071-09		45499985	2629910	65	46434										
THOC5	0	genome.wustl.edu	37	chr22	29945112	29945112	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	tcggatcactttgggcttccGttttttgctcgattctgatg	10	9	2	1			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	22	29945112	29945112	G	C	SNP	THOC5	ENST00000397871	human	ensembl	69_37n	-1	known	missense	c.25	p.R9G	1.000	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	75	0	0	52	14	21.21	-	-	-	C	29945112	G	C	29945112	3	2	511	1	0	0	0	0	1	0	0	0	15963	1144	40	3	2102	3	THOC5	22	29945112	Missense_Mutation	SNP	G	TCGA-BH-A0C0-01A-21W-A071-09		29945112	21359454	66	46435										
PTCHD1	0	genome.wustl.edu	37	chrX	23411647	23411647	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cttggaaaccctgaggagacTttctgtcacctccaaggtga	10	11	2	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	X	23411647	23411647	T	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.2012	p.L671H	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	236	0	0	96	35	26.72	-	-	-	A	23411647	T	A	23411647	3	1	511	1	0	0	0	0	1	0	0	0	12812	1609	56	5	2022	5	PTCHD1	23	23411647	Missense_Mutation	SNP	T	TCGA-BH-A0C0-01A-21W-A071-09		23411647	131858913	67	46436										
GLUD2	0	genome.wustl.edu	37	chrX	120182736	120182736	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0746268656716418	5	0.553235724720845	1.48618538324421	0.79263220439691	1.90231729055258	0.265734265734266	0.921589049248625	0	cacccagagtcaaagccaagAtcattgctgaaggtgccaat	9	11	2	3			TCGA-BH-A0C0-01A-21W-A071-09	TCGA-BH-A0C0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9d68dd-d159-4a7e-b914-18d2498b19d6	58a1d50c-1674-4db6-8ed7-d2aa04826142	X	120182736	120182736	A	G	SNP	GLUD2	ENST00000328078	human	ensembl	69_37n	1	known	missense	c.1198	p.I400V	1.000	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890	261	0	0	110	52	32.1	-	-	-	G	120182736	A	G	120182736	3	3	511	1	0	0	0	0	1	0	0	0	6529	333	12	5	1200	5	GLUD2	23	120182736	Missense_Mutation	SNP	A	TCGA-BH-A0C0-01A-21W-A071-09	96771089	120182736	35087824	68	46437										
CASZ1	0	genome.wustl.edu	37	chr1	10714168	10714168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	acttgcactcctcgtacttgTagaacttcttgaagccgtcc	7	13	1	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	1	10714168	10714168	T	C	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.1946	p.Y649C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	191	1	0.52	89	72	44.72	-	-	-	C	10714168	T	C	10714168	3	2	512	1	0	0	0	0	1	0	0	0	2710	1638	57	5	3381	5	CASZ1	1	10714168	Missense_Mutation	SNP	T	TCGA-BH-A0C1-01B-11D-A12B-09		10714168	238536453	1	46438										
PODN	0	genome.wustl.edu	37	chr1	53537273	53537273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	accggctggagacgctgaacCtgcaaaacaaccgcctgact	10	14	0	3			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	1	53537273	53537273	C	T	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	silent	c.523	p.L175	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	70	0	0	56	15	21.13	-	-	-	T	53537273	C	T	53537273	2	4	512	1	0	0	0	0	0	0	0	1	12252	680	24	4		4	PODN	1	53537273	Silent	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09	42823105	53537273	195713348	2	46439										
CACHD1	0	genome.wustl.edu	37	chr1	65120486	65120486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gttagctatgcctggaagatGgtgagtgagaggaagttgtg	17	3	0	3			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	1	65120486	65120486	G	A	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.1782	p.M594I	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	284	0	0	126	110	46.41	-	-	-	A	65120486	G	A	65120486	3	1	512	1	0	0	0	0	1	0	0	0	2562	1362	47	4	1675	4	CACHD1	1	65120486	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	11583213	65120486	184130135	3	46440										
HIST2H2BE	0	genome.wustl.edu	37	chr1	149858180	149858180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gggccggagcggattttgccGgttcaggcatggtaagacac	16	9	1	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	1	149858180	149858180	G	A	SNP	HIST2H2BE	ENST00000369155	human	ensembl	69_37n	-1	known	missense	c.11	p.P4L	0.997	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	287	0	0	231	348	60	-	-	-	A	149858180	G	A	149858180	3	1	512	1	0	0	0	0	1	0	0	0	7230	1116	39	1	373	1	HIST2H2BE	1	149858180	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	84737694	149858180	99392441	4	46441										
ATG16L1	0	genome.wustl.edu	37	chr2	234201936	234201936	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	acgtggcggcaggctctgctGagggctctctgtatatctgg	15	10	3	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	2	234201936	234201936	G	A	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.1663	p.E555K	0.994	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	211	1	0.47	124	133	51.75	-	-	-	A	234201936	G	A	234201936	3	1	512	1	0	0	0	0	1	0	0	0	1095	1291	45	2	1729	2	ATG16L1	2	234201936	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		234201936	8997437	5	46442										
SCAP	0	genome.wustl.edu	37	chr3	47467065	47467065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ctgtgaccacggcagccaggGccagcccccacttggacttg	12	16	0	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	3	47467065	47467065	G	A	SNP	SCAP	ENST00000265565	human	ensembl	69_37n	-1	known	missense	c.947	p.A316V	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650	53	0	0	58	11	15.71	-	-	-	A	47467065	G	A	47467065	3	1	512	1	0	0	0	0	1	0	0	0	13964	1203	42	4	2956	4	SCAP	3	47467065	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		47467065	150555365	6	46443										
CBLB	0	genome.wustl.edu	37	chr3	105397361	105397361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gttcaatgagactatgccttGcaggaggtgggggaggtggg	19	5	1	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	3	105397361	105397361	G	A	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.2483	p.A828V	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	330	0	0	229	39	14.39	-	-	-	A	105397361	G	A	105397361	3	1	512	1	0	0	0	0	1	0	0	0	2726	1319	46	4	477	4	CBLB	3	105397361	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	57930296	105397361	92625069	7	46444										
PRMT10	0	genome.wustl.edu	37	chr4	148575485	148575485	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	agcaaagcaatttctgtagaTtccaatatacatgtctgctc	6	9	2	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	4	148575485	148575485	T	C	SNP	PRMT10	ENST00000322396	human	ensembl	69_37n	-1	known	silent	c.1563	p.E521	0.899	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169	303	0	0	213	113	34.56	-	-	-	C	148575485	T	C	148575485	2	2	512	1	0	0	0	0	0	0	0	1	12617	1490	52	5		5	PRMT10	4	148575485	Silent	SNP	T	TCGA-BH-A0C1-01B-11D-A12B-09		148575485	42578791	8	46445										
MAN2A1	0	genome.wustl.edu	37	chr5	109183450	109183450	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ataacaagattacagctaatCtatttcgaatactactagaa	4	7	1	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	5	109183450	109183450	C	T	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	silent	c.2935	p.L979	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	276	0	0	260	107	28.76	-	-	-	T	109183450	C	T	109183450	2	4	512	1	0	0	0	0	0	0	0	1	9285	912	32	2		2	MAN2A1	5	109183450	Silent	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09		109183450	71731810	9	46446										
HECW1	0	genome.wustl.edu	37	chr7	43484146	43484146	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	cccccagtgcagaagagctgGccgagcagctggacctgggt	15	13	0	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	7	43484146	43484146	G	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.1375	p.A459S	0.073	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	38	0	0	35	15	30	-	-	-	T	43484146	G	T	43484146	3	4	512	1	0	0	0	0	1	0	0	0	7093	1203	42	4	1409	4	HECW1	7	43484146	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		43484146	115654517	10	46447										
EEF1D	0	genome.wustl.edu	37	chr8	144662795	144662795	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	cgcctccttgtcctcctcctCattgtcactgccaaacaggt	6	17	2	0			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	8	144662795	144662795	C	T	SNP	EEF1D	ENST00000423316	human	ensembl	69_37n	-1	known	missense	c.1591	p.E531K	1.000	pfam_EF-1_beta_acid_region_euk	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1D	HGNC	ENSG00000104529	138	0	0	86	49	35.77	-	-	-	T	144662795	C	T	144662795	3	4	512	1	0	0	0	0	1	0	0	0	4961	835	29	2	364	2	EEF1D	8	144662795	Missense_Mutation	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09		144662795	1701227	11	46448										
IARS	0	genome.wustl.edu	37	chr9	95027830	95027830	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	tccgccactgacccaatgcaTaccacctgtcaaaaacaaag	5	15	1	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	9	95027830	95027830	T	A	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	silent	c.1437	p.V479	0.628	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	224	0	0	267	66	19.82	-	-	-	A	95027830	T	A	95027830	2	1	512	1	0	0	0	0	0	0	0	1	7527	1393	49	5		5	IARS	9	95027830	Silent	SNP	T	TCGA-BH-A0C1-01B-11D-A12B-09		95027830	46185601	12	46449										
FBXO18	0	genome.wustl.edu	37	chr10	5945053	5945053	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gctcggagtcacttggctgtGacccagcccttcggtcaaag	12	13	2	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	10	5945053	5945053	G	A	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	silent	c.225	p.V75	0.989	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	107	0	0	108	23	17.42	-	-	-	A	5945053	G	A	5945053	2	1	512	1	0	0	0	0	0	0	0	1	5777	1277	45	2		2	FBXO18	10	5945053	Silent	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		5945053	129589694	13	46450										
YME1L1	0	genome.wustl.edu	37	chr10	27436575	27436575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ttgaaacaatgttaagcttcGtcaggaagtcactgaacata	8	7	2	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	10	27436575	27436575	G	A	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	missense	c.191	p.T64M	0.039	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	277	0	0	172	116	40	-	-	-	A	27436575	G	A	27436575	3	1	512	1	0	0	0	0	1	0	0	0	17584	1145	40	1	2202	1	YME1L1	10	27436575	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	21491522	27436575	108098172	14	46451										
COL17A1	0	genome.wustl.edu	37	chr10	105801282	105801282	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gggtgggcctgggggaccttGtaaattaagaacttctatag	14	6	1	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	10	105801282	105801282	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	nonsense	c.2566	p.Q856*	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	82	0	0	70	13	15.66	-	-	-	A	105801282	G	A	105801282	4	1	512	1	0	0	0	0	0	1	0	0	3704	1386	48	4	2007	4	COL17A1	10	105801282	Nonsense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	78364707	105801282	29733465	15	46452										
OR4S2	0	genome.wustl.edu	37	chr11	55418854	55418854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	tacactccattatccaagtgGctctggtagtccaactaccc	6	14	1	0			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	11	55418854	55418854	G	A	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.475	p.A159T	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	254	0	0	159	96	37.65	-	-	-	A	55418854	G	A	55418854	3	1	512	1	0	0	0	0	1	0	0	0	11156	1203	42	4	477	4	OR4S2	11	55418854	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		55418854	79587662	16	46453										
YAP1	0	genome.wustl.edu	37	chr11	102100570	102100570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	tagaaggagaggagctgatgCcaagtctgcaggaagctttg	15	6	1	3			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	11	102100570	102100570	C	T	SNP	YAP1	ENST00000282441	human	ensembl	69_37n	1	known	missense	c.1414	p.P472S	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	YAP1	HGNC	ENSG00000137693	284	0	0	236	49	17.07	-	-	-	T	102100570	C	T	102100570	3	4	512	1	0	0	0	0	1	0	0	0	17563	739	26	4	1460	4	YAP1	11	102100570	Missense_Mutation	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09	46681716	102100570	32905946	17	46454										
VPS35	0	genome.wustl.edu	37	chr16	46695632	46695632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ctttactaattcacttaccgCatcattttccttttcataaa	1	11	3	0			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	16	46695632	46695632	C	T	SNP	VPS35	ENST00000299138	human	ensembl	69_37n	-1	known	missense	c.2209	p.A737T	1.000	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329	122	0	0	99	35	26.12	-	-	-	T	46695632	C	T	46695632	3	4	512	1	0	0	0	0	1	0	0	0	17300	710	25	4	189	4	VPS35	16	46695632	Missense_Mutation	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09		46695632	43659121	18	46455										
TRADD	0	genome.wustl.edu	37	chr16	67190466	67190466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ccaccttctgctgggggtgcGcgtaggcatccgacaggacc	14	14	1	0			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	16	67190466	67190466	G	A	SNP	TRADD	ENST00000345057	human	ensembl	69_37n	-1	known	missense	c.98	p.A33V	0.032	superfamily_TRADD_N	pfam_TRADD_N,pfam_Death,superfamily_TRADD_N,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	TRADD	HGNC	ENSG00000102871	79	0	0	47	10	17.24	-	-	-	A	67190466	G	A	67190466	3	1	512	1	0	0	0	0	1	0	0	0	16532	1087	38	1	856	1	TRADD	16	67190466	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	20494834	67190466	23164287	19	46456										
CDH1	0	genome.wustl.edu	37	chr16	68842414	68842414	+	Frame_Shift_Del	DEL	C	C	-													0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	agaagagagactgggttattCctcccatcagctgcccagaa							TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	16	68842414	68842414	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.475	p.P159fs	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	190	0	0	137	66	31.88	-	-	-	-	68842414	C	-	68842414	7	5	512	1	0	1	0	1	0	0	0	0	3124	855	30	0	489	0	CDH1	16	68842414	Frame_Shift_Del	DEL	C	TCGA-BH-A0C1-01B-11D-A12B-09	1651948	68842414	21512339	20	46457										
ERBB2	0	genome.wustl.edu	37	chr17	37881000	37881000	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	aagcatacgtgatggctggtGtgggctccccatatgtctcc	12	11	1	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	17	37881000	37881000	G	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2329	p.V777L	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	118	0	0	77	46	37.4	-	-	-	C	37881000	G	C	37881000	3	2	512	1	0	0	0	0	1	0	0	0	5243	1377	48	4	2407	4	ERBB2	17	37881000	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09		37881000	43314210	21	46458										
ZNF841	0	genome.wustl.edu	37	chr19	52569331	52569331	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gtcaatgaagaccttgccacAcacattacatttgtaaggtt	7	9	1	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	19	52569331	52569331	A	C	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.1804	p.C602G	0.835	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	230	0	0	273	48	14.86	-	-	-	C	52569331	A	C	52569331	3	2	512	1	0	0	0	0	1	0	0	0	18282	159	6	5	974	5	ZNF841	19	52569331	Missense_Mutation	SNP	A	TCGA-BH-A0C1-01B-11D-A12B-09		52569331	6559652	22	46459										
RUNX1	0	genome.wustl.edu	37	chr21	36252958	36252958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ccgagtagttttcatcattgCcagccatcacagtgaccaga	8	12	3	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	21	36252958	36252958	C	T	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.404	p.G135D	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	197	0	0	168	85	33.33	-	-	-	T	36252958	C	T	36252958	3	4	512	1	0	0	0	0	1	0	0	0	13832	739	26	4	1091	4	RUNX1	21	36252958	Missense_Mutation	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09		36252958	11876937	23	46460										
PCNT	0	genome.wustl.edu	37	chr21	47836277	47836277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	tcaaaaatcaggccatagacGcgtgtgatgccaatacaacc	8	11	2	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	21	47836277	47836277	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.6445	p.A2149T	0.002	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	130	0	0	131	23	14.84	-	-	-	A	47836277	G	A	47836277	3	1	512	1	0	0	0	0	1	0	0	0	11663	1087	38	1	6563	1	PCNT	21	47836277	Missense_Mutation	SNP	G	TCGA-BH-A0C1-01B-11D-A12B-09	11583319	47836277	293618	24	46461										
MID1	0	genome.wustl.edu	37	chrX	10534972	10534972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	caaagctgccacctgatgatCgcggtgccgcccaaccagtt	10	15	0	2			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	X	10534972	10534972	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.616	p.D206N	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	151	0	0	144	38	20.88	-	-	-	T	10534972	C	T	10534972	3	4	512	1	0	0	0	0	1	0	0	0	9647	884	31	1	1423	1	MID1	23	10534972	Missense_Mutation	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09		10534972	144735588	25	46462										
STARD8	0	genome.wustl.edu	37	chrX	67940160	67940160	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	ccagattaccggggacagcaCgtatttggggtgccacccct	12	13	0	1			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	X	67940160	67940160	C	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	silent	c.1944	p.H648	0.914	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	66	0	0	62	12	16.22	-	-	-	T	67940160	C	T	67940160	2	4	512	1	0	0	0	0	0	0	0	1	15354	535	19	1		1	STARD8	23	67940160	Silent	SNP	C	TCGA-BH-A0C1-01B-11D-A12B-09	57405188	67940160	87330400	26	46463										
MAGEA12	0	genome.wustl.edu	37	chrX	151899975	151899975	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.520806845883191	1.68787878787879	0	1.77671451355662	0.0285714285714286	0.251737451737452	0	gctggtttcaacgagggcccTtggaccccacaggaactcgt	12	13	1	0			TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	adebc709-8059-43c3-ad0e-a102fa1536ff	5298995d-f21e-48f8-8696-0fb2e192693a	X	151899975	151899975	T	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.826	p.R276	0.401	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	386	0	0	366	66	15.21	-	-	-	G	151899975	T	G	151899975	2	3	512	1	0	0	0	0	0	0	0	1	9233	1608	56	5		5	MAGEA12	23	151899975	Silent	SNP	T	TCGA-BH-A0C1-01B-11D-A12B-09	83959815	151899975	3370585	27	46464										
HNRNPR	0	genome.wustl.edu	37	chr1	23650213	23650213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atataaatcccttggtatttTgcctacaaatacctgaaata	4	8	0	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	23650213	23650213	T	G	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.511	p.K171Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	165	0	0	145	28	16.18	-	-	-	G	23650213	T	G	23650213	3	3	513	1	0	0	0	0	1	0	0	0	7323	1821	63	5	1423	5	HNRNPR	1	23650213	Missense_Mutation	SNP	T	TCGA-BH-A0C3-01A-21D-A12Q-09		23650213	225600408	1	46465										
KIRREL	0	genome.wustl.edu	37	chr1	158059318	158059318	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtaacagcaaccagctgctGctgaagtcggtgactcaggc	12	11	1	2			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	158059318	158059318	G	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	silent	c.1119	p.L373	0.993	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	25	0	0	45	13	22.41	-	-	-	T	158059318	G	T	158059318	2	4	513	1	0	0	0	0	0	0	0	1	8377	1306	46	4		4	KIRREL	1	158059318	Silent	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09	134409105	158059318	91191303	2	46466										
UCK2	0	genome.wustl.edu	37	chr1	165872480	165872480	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attttatctcagtacattacGttcgtcaagcctgcctttga	6	10	2	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	165872480	165872480	G	C	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.561	p.T187	0.000	pfam_PRK/URK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	389	1	0.26	565	121	17.64	-	-	-	C	165872480	G	C	165872480	2	2	513	1	0	0	0	0	0	0	0	1	17021	1132	40	3		3	UCK2	1	165872480	Silent	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09	7813162	165872480	83378141	3	46467										
ITPR1	0	genome.wustl.edu	37	chr3	4856841	4856841	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttatcattgacacttttgcTgacctgaggagtgagaagca	11	7	1	4			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	3	4856841	4856841	T	C	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	silent	c.7761	p.A2587	0.047	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	307	0	0	282	70	19.89	-	-	-	C	4856841	T	C	4856841	2	2	513	1	0	0	0	0	0	0	0	1	7974	1567	55	5		5	ITPR1	3	4856841	Silent	SNP	T	TCGA-BH-A0C3-01A-21D-A12Q-09		4856841	193165589	4	46468										
RPS6KA2	0	genome.wustl.edu	37	chr6	166912078	166912078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgggcgccatgtactcgatcGtcccgcagaaggagtacgct	13	13	0	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	6	166912078	166912078	G	A	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	missense	c.740	p.T247M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	45	0	0	48	17	26.15	-	-	-	A	166912078	G	A	166912078	3	1	513	1	0	0	0	0	1	0	0	0	13737	1145	40	1	1592	1	RPS6KA2	6	166912078	Missense_Mutation	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09		166912078	4202989	5	46469										
TNFRSF10C	0	genome.wustl.edu	37	chr8	22973124	22973124	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagagatgtgccggaagtgTagcaggtgagacagcagtca	15	8	1	2			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	8	22973124	22973124	T	C	SNP	TNFRSF10C	ENST00000356864	human	ensembl	69_37n	1	known	silent	c.384	p.C128	0.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10C	HGNC	ENSG00000173535	71	0	0	106	20	15.87	-	-	-	C	22973124	T	C	22973124	2	2	513	1	0	0	0	0	0	0	0	1	16377	1644	57	5		5	TNFRSF10C	8	22973124	Silent	SNP	T	TCGA-BH-A0C3-01A-21D-A12Q-09		22973124	123390898	6	46470										
ZNF462	0	genome.wustl.edu	37	chr9	109771874	109771874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctcttaacactgagaagcGttttccatgtgaattttgtg	9	7	1	2			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	9	109771874	109771874	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.7418	p.R2473H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	289	0	0	254	70	21.6	-	-	-	A	109771874	G	A	109771874	3	1	513	1	0	0	0	0	1	0	0	0	18022	1145	40	1	7280	1	ZNF462	9	109771874	Missense_Mutation	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09		109771874	31441557	7	46471										
GOLGA8A	0	genome.wustl.edu	37	chr15	34677517	34677517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatttagtttctttttctctGtgttcaatctctggatttga	6	6	4	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	15	34677517	34677517	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.485	p.T162I	0.001	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	8	0	0	5	4	44.44	-	-	-	A	34677517	G	A	34677517	3	1	513	1	0	0	0	0	1	0	0	0	6613	1377	48	4	1460	4	GOLGA8A	15	34677517	Missense_Mutation	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09		34677517	67853875	8	46472										
IGF1R	0	genome.wustl.edu	37	chr15	99456511	99456511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acattcgcaccaatgcttcaGgtatccatgcctagacaagc	7	13	1	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	15	99456511	99456511	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.1828	p.V610I	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	36	0	0	47	9	16.07	-	-	-	A	99456511	G	A	99456511	3	1	513	1	0	0	0	0	1	0	0	0	7625	1014	35	4	1858	4	IGF1R	15	99456511	Missense_Mutation	SNP	G	TCGA-BH-A0C3-01A-21D-A12Q-09	64778994	99456511	3074881	9	46473										
TP53	0	genome.wustl.edu	37	chr17	7578371	7578371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccagccccagctgctcacCatcgctatctgagcagcgct	8	18	2	1			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	17	7578371	7578371	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.559	p.G187S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	63	0	0	57	18	24	-	-	-	T	7578371	C	T	7578371	3	4	513	1	0	0	0	0	1	0	0	0	16477	608	21	4	739	4	TP53	17	7578371	Missense_Mutation	SNP	C	TCGA-BH-A0C3-01A-21D-A12Q-09		7578371	73616839	10	46474										
RUNX1	0	genome.wustl.edu	37	chr21	36231791	36231791	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcgaggttctcggggcccaTccactgtgattttgatggct	12	10	1	2			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	21	36231791	36231791	T	C	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.593	p.D198G	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	434	1	0.23	485	116	19.27	-	-	-	C	36231791	T	C	36231791	3	2	513	1	0	0	0	0	1	0	0	0	13832	1435	50	5	898	5	RUNX1	21	36231791	Missense_Mutation	SNP	T	TCGA-BH-A0C3-01A-21D-A12Q-09		36231791	11898104	11	46475										
AMELX	0	genome.wustl.edu	37	chrX	11316986	11316986	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccatgcagcccctgccgccaCagccacctctgcctccgatg	8	21	1	0			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	11316986	11316986	C	T	SNP	AMELX	ENST00000380712	human	ensembl	69_37n	1	known	nonsense	c.505	p.Q169*	1.000	pfam_Amelogenin,smart_Amelogenin	pfam_Amelogenin,smart_Amelogenin,prints_Amelogenin	-	no_errors	AMELX	HGNC	ENSG00000125363	137	0	0	171	43	20.09	-	-	-	T	11316986	C	T	11316986	4	4	513	1	0	0	0	0	0	1	0	0	569	479	17	4	523	4	AMELX	23	11316986	Nonsense_Mutation	SNP	C	TCGA-BH-A0C3-01A-21D-A12Q-09		11316986	143953574	12	46476										
NHS	0	genome.wustl.edu	37	chrX	17745442	17745443	+	Frame_Shift_Del	DEL	TA	TA	-													0	0	1	0	0	0	1	1	0	ccctctttaaaagatggaacTatatcactgagtaaagacct							TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	17745442	17745443	TA	-	DEL	NHS	ENST00000380060	human	ensembl	69_37n	1	known	frame_shift_del	c.3153_3154	p.S1053fs	0.007:0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	324	0	0	378	75	16.52	-	-	-	-	17745443	TA	-	17745442	7	5	513	1	0	1	0	1	0	0	0	0	10483	1509	53	0	3280	0	NHS	23	17745442	Frame_Shift_Del	DEL	TA	TCGA-BH-A0C3-01A-21D-A12Q-09	6428456	17745442	137525118	13	46477										
SPEN	0	genome.wustl.edu	37	chr1	16261573	16261573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	cctgtgctggttcacaaccaGctggtcctcaccccaagcat	8	16	2	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	16261573	16261573	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.8838	p.Q2946	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	46	0	0	41	12	22.64	-	-	-	A	16261573	G	A	16261573	2	1	514	1	0	0	0	0	0	0	0	1	15129	962	34	4		4	SPEN	1	16261573	Silent	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09		16261573	232989048	1	46478										
BSND	0	genome.wustl.edu	37	chr1	55474123	55474123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	ggggcagcagtgggaaatagCcctgcccaacaactggcagc	14	12	0	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	55474123	55474123	C	T	SNP	BSND	ENST00000371265	human	ensembl	69_37n	1	known	missense	c.785	p.A262V	0.010	NULL	NULL	-	no_errors	BSND	HGNC	ENSG00000162399	53	0	0	78	26	25	-	-	-	T	55474123	C	T	55474123	3	4	514	1	0	0	0	0	1	0	0	0	1539	739	26	4	799	4	BSND	1	55474123	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09	39212550	55474123	193776498	2	46479										
C1orf112	0	genome.wustl.edu	37	chr1	169770035	169770035	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gctttacagaaattttgaaaAttattgtagaaatgttttta	6	2	0	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	169770035	169770035	A	T	SNP	C1orf112	ENST00000456684	human	ensembl	69_37n	1	known	missense	c.163	p.I55F	0.828	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	39	0	0	40	6	13.04	-	-	-	T	169770035	A	T	169770035	3	4	514	1	0	0	0	0	1	0	0	0	2004	116	4	5		5	C1orf112	1	169770035	Missense_Mutation	SNP	A	TCGA-BH-A0C7-01B-11D-A10Y-09	114295912	169770035	79480586	3	46480										
CEP170	0	genome.wustl.edu	37	chr1	243289814	243289814	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	aatctattgaaatgtatactGaaatcagcctcagattcagc	6	8	4	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	243289814	243289814	G	A	SNP	CEP170	ENST00000336415	human	ensembl	69_37n	-1	novel	missense	c.4613	p.S1538L	1.000	NULL	superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP170	HGNC	ENSG00000143702	61	0	0	34	62	64.58	-	-	-	A	243289814	G	A	243289814	3	1	514	1	0	0	0	0	1	0	0	0	3279	1281	45	2	66	2	CEP170	1	243289814	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	73519779	243289814	5960807	4	46481										
SCN1A	0	genome.wustl.edu	37	chr2	166900252	166900252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	caggcgatgtaggaactgaaGgtccaccaaccaaggaaacc	11	11	0	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	2	166900252	166900252	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.1970	p.P657H	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	76	0	0	118	70	37.23	-	-	-	T	166900252	G	T	166900252	3	4	514	1	0	0	0	0	1	0	0	0	14002	1000	35	4	4123	4	SCN1A	2	166900252	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09		166900252	76299121	5	46482										
COL6A5	0	genome.wustl.edu	37	chr3	130095337	130095337	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	agttcattggcgggtccctgCagataggaaaggctcttcag	13	9	3	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	3	130095337	130095337	C	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.325	p.Q109K	0.166	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	71	0	0	77	12	13.48	-	-	-	A	130095337	C	A	130095337	3	1	514	1	0	0	0	0	1	0	0	0	3732	711	25	4	331	4	COL6A5	3	130095337	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		130095337	67927093	6	46483										
KCNMB2	0	genome.wustl.edu	37	chr3	178560678	178560678	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	ttgccatggtgaaacttacaCagtacctctccctactatgt	6	12	1	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	3	178560678	178560678	C	T	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	1	known	nonsense	c.661	p.Q221*	1.000	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	59	0	0	68	39	36.11	-	-	-	T	178560678	C	T	178560678	4	4	514	1	0	0	0	0	0	1	0	0	8129	479	17	4	675	4	KCNMB2	3	178560678	Nonsense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09	48465341	178560678	19461752	7	46484										
SULT1E1	0	genome.wustl.edu	37	chr4	70707775	70707775	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tgctcataatgtttatcaaaTttttcattcagggctactgt	6	7	4	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	4	70707775	70707775	T	C	SNP	SULT1E1	ENST00000506796	human	ensembl	69_37n	-1	known	missense	c.320	p.N107S	0.663	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SULT1E1	HGNC	ENSG00000109193	285	0	0	52	55	51.4	-	-	-	C	70707775	T	C	70707775	3	2	514	1	0	0	0	0	1	0	0	0	15471	1490	52	5	66	5	SULT1E1	4	70707775	Missense_Mutation	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09		70707775	120446501	8	46485										
CDC5L	0	genome.wustl.edu	37	chr6	44413549	44413549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	acaggctcacttggagttacGcacttttgaagaactcaaga	9	9	2	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	44413549	44413549	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	missense	c.2249	p.R750H	0.976	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	174	0	0	162	34	17.26	-	-	-	A	44413549	G	A	44413549	3	1	514	1	0	0	0	0	1	0	0	0	3111	1087	38	1	2307	1	CDC5L	6	44413549	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09		44413549	126701518	9	46486										
GPR116	0	genome.wustl.edu	37	chr6	46826804	46826804	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	cgtttcgccgcctgaagggcTattgttcttaaaagtcattg	10	9	2	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	46826804	46826804	T	C	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.2836	p.S946G	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	131	0	0	159	20	11.11	-	-	-	C	46826804	T	C	46826804	3	2	514	1	0	0	0	0	1	0	0	0	6683	1522	53	5	1224	5	GPR116	6	46826804	Missense_Mutation	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09	2413255	46826804	124288263	10	46487										
EFHC1	0	genome.wustl.edu	37	chr6	52285258	52285258	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	ctttcttccgggcacgtcctTtaaggactctacggtgagca	10	12	2	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	52285258	52285258	T	G	SNP	EFHC1	ENST00000371068	human	ensembl	69_37n	1	known	missense	c.50	p.F17C	0.944	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC1	HGNC	ENSG00000096093	18	0	0	74	47	38.84	-	-	-	G	52285258	T	G	52285258	3	3	514	1	0	0	0	0	1	0	0	0	4981	1841	64	5	52	5	EFHC1	6	52285258	Missense_Mutation	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09	5458454	52285258	118829809	11	46488										
DDX43	0	genome.wustl.edu	37	chr6	74123768	74123768	+	Frame_Shift_Del	DEL	A	A	-													0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	catggagatagagaacagagAgatcgggagaaagcattaga							TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	74123768	74123768	A	-	DEL	DDX43	ENST00000370336	human	ensembl	69_37n	1	known	frame_shift_del	c.1572	p.D525fs	0.796	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007	65	0	0	46	7	13.21	-	-	-	-	74123768	A	-	74123768	7	5	514	1	0	1	0	1	0	0	0	0	4394	301	11	0	1622	0	DDX43	6	74123768	Frame_Shift_Del	DEL	A	TCGA-BH-A0C7-01B-11D-A10Y-09	21838510	74123768	96991299	12	46489										
ANKRD6	0	genome.wustl.edu	37	chr6	90276715	90276715	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	catgagccagcaagatgcggTcgctgcactttcagagcgcc	12	13	1	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	90276715	90276715	T	C	SNP	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	missense	c.20	p.V7A	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	61	0	0	116	45	27.95	-	-	-	C	90276715	T	C	90276715	3	2	514	1	0	0	0	0	1	0	0	0	684	1667	58	5	22	5	ANKRD6	6	90276715	Missense_Mutation	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09	16152947	90276715	80838352	13	46490										
TRRAP	0	genome.wustl.edu	37	chr7	98507951	98507951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	aaggaagacaagcagacattCcaagtcacagactgtcgaag	10	9	1	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	7	98507951	98507951	C	T	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.767	p.S256F	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	47	0	0	43	12	21.82	-	-	-	T	98507951	C	T	98507951	3	4	514	1	0	0	0	0	1	0	0	0	16697	854	30	2	1677	2	TRRAP	7	98507951	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		98507951	60630712	14	46491										
TRRAP	0	genome.wustl.edu	37	chr7	98529083	98529083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gctggagcagcttctgatgcGgtgcgcaacgcctttaaaag	13	10	1	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	7	98529083	98529083	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.3647	p.R1216Q	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	18	0	0	51	15	22.73	-	-	-	A	98529083	G	A	98529083	3	1	514	1	0	0	0	0	1	0	0	0	16697	1116	39	1	3745	1	TRRAP	7	98529083	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	21132	98529083	60609580	15	46492										
KCNB2	0	genome.wustl.edu	37	chr8	73480344	73480344	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tttggccaagaacttgattaCtgggggattgatgagatcta	12	5	1	4			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	8	73480344	73480344	C	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	nonsense	c.375	p.Y125*	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	103	0	0	126	15	10.64	-	-	-	A	73480344	C	A	73480344	4	1	514	1	0	0	0	0	0	1	0	0	8067	576	20	4	377	4	KCNB2	8	73480344	Nonsense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		73480344	72883678	16	46493										
GATA3	0	genome.wustl.edu	37	chr10	8111506	8111507	+	Frame_Shift_Del	DEL	AT	AT	-													0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	aaccacactctggaggaggaAtgccaatggggaccctgtct							TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	10	8111506	8111507	AT	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.995_996	p.N332fs	1.000:0.872	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	58	0	0	112	26	18.57	-	-	-	-	8111507	AT	-	8111506	7	5	514	1	0	1	0	1	0	0	0	0	6305	101	4	0	1009	0	GATA3	10	8111506	Frame_Shift_Del	DEL	AT	TCGA-BH-A0C7-01B-11D-A10Y-09		8111506	127423241	17	46494										
SETD8	0	genome.wustl.edu	37	chr12	123892232	123892232	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	aaggcttccattgaagcccaCccgtggctgaagcattaacc	9	13	0	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	12	123892232	123892232	C	A	SNP	SETD8	ENST00000330479	human	ensembl	69_37n	1	known	missense	c.1041	p.H347Q	1.000	pirsf_Hist_H4-K20_MeTrfase	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_errors	SETD8	HGNC	ENSG00000183955	11	0	0	22	12	35.29	-	-	-	A	123892232	C	A	123892232	3	1	514	1	0	0	0	0	1	0	0	0	14225	506	18	4	1071	4	SETD8	12	123892232	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		123892232	9959663	18	46495										
RB1	0	genome.wustl.edu	37	chr13	48936989	48936989	+	Frame_Shift_Del	DEL	C	C	-													0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	ttaatggttcacctcgaacaCccaggcgaggtcagaacagg							TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	13	48936989	48936989	C	-	DEL	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_del	c.757	p.R254fs	1.000	NULL	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	142	0	0	46	47	48.96	-	-	-	-	48936989	C	-	48936989	7	5	514	1	0	1	0	1	0	0	0	0	13181	507	18	0	787	0	RB1	13	48936989	Frame_Shift_Del	DEL	C	TCGA-BH-A0C7-01B-11D-A10Y-09		48936989	66232889	19	46496										
ABCC4	0	genome.wustl.edu	37	chr13	95696580	95696580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tctgatttttcctgagaattGccctggcaaggcacaccagt	9	11	1	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	13	95696580	95696580	G	T	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.3569	p.A1190E	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	90	0	0	206	29	12.29	-	-	-	T	95696580	G	T	95696580	3	4	514	1	0	0	0	0	1	0	0	0	55	1319	46	4	424	4	ABCC4	13	95696580	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	46759591	95696580	19473298	20	46497										
DCAF11	0	genome.wustl.edu	37	chr14	24586235	24586235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	cttgggatggtcgtcttgggGatcgatacaacccacctggt	13	10	1	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	14	24586235	24586235	G	T	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.265	p.D89Y	1.000	pirsf_WD_repeat_p23	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	82	0	0	107	19	15.08	-	-	-	T	24586235	G	T	24586235	3	4	514	1	0	0	0	0	1	0	0	0	4294	1174	41	2	271	2	DCAF11	14	24586235	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09		24586235	82763305	21	46498										
CCDC135	0	genome.wustl.edu	37	chr16	57760088	57760088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tccagctgcgctaccactgcCgtgaggaccacatcacggcc	10	17	1	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	57760088	57760088	C	T	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1867	p.R623C	0.993	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	14	0	0	37	7	15.91	-	-	-	T	57760088	C	T	57760088	3	4	514	1	0	0	0	0	1	0	0	0	2794	652	23	1	1913	1	CCDC135	16	57760088	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		57760088	32594665	22	46499										
CNGB1	0	genome.wustl.edu	37	chr16	57994814	57994814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gccacagaagcagccgcagcCcaggcctgcagaggggccag	15	15	0	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	57994814	57994814	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	missense	c.464	p.G155E	0.001	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	29	0	0	50	8	13.79	-	-	-	T	57994814	C	T	57994814	3	4	514	1	0	0	0	0	1	0	0	0	3630	623	22	4	3425	4	CNGB1	16	57994814	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09	234726	57994814	32359939	23	46500										
ADAMTS18	0	genome.wustl.edu	37	chr16	77353947	77353947	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	acctgcagctcctggatttcGatgcttcgggcgccagctgg	13	13	0	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	77353947	77353947	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.2331	p.I777	0.842	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	22	0	0	39	11	22	-	-	-	A	77353947	G	A	77353947	2	1	514	1	0	0	0	0	0	0	0	1	263	1048	37	1		1	ADAMTS18	16	77353947	Silent	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	19359133	77353947	13000806	24	46501										
DPEP1	0	genome.wustl.edu	37	chr16	89696849	89696849	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gatggtggctgtggccccttGtggccgtctgcactgcagac	15	12	1	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	89696849	89696849	G	T	SNP	DPEP1	ENST00000261615	human	ensembl	69_37n	1	known	missense	c.31	p.V11L	0.949	NULL	pfam_Peptidase_M19	-	no_errors	DPEP1	HGNC	ENSG00000015413	15	0	0	47	13	21.67	-	-	-	T	89696849	G	T	89696849	3	4	514	1	0	0	0	0	1	0	0	0	4748	1377	48	4	33	4	DPEP1	16	89696849	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	12342902	89696849	657904	25	46502										
ERN1	0	genome.wustl.edu	37	chr17	62130285	62130285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	agatcatggccttgatcttgCcgtgtgcattgggcatggat	13	8	2	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	17	62130285	62130285	C	T	SNP	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	missense	c.2108	p.G703D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	47	0	0	139	50	26.46	-	-	-	T	62130285	C	T	62130285	3	4	514	1	0	0	0	0	1	0	0	0	5274	739	26	4	849	4	ERN1	17	62130285	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		62130285	19064925	26	46503										
ZNF414	0	genome.wustl.edu	37	chr19	8577297	8577297	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tagcgattgggtttgtagtgCagtttgctgtgagccaccag	14	7	0	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	19	8577297	8577297	C	A	SNP	ZNF414	ENST00000393927	human	ensembl	69_37n	-1	known	silent	c.504	p.L168	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF414	HGNC	ENSG00000133250	78	0	0	273	38	12.22	-	-	-	A	8577297	C	A	8577297	2	1	514	1	0	0	0	0	0	0	0	1	17987	697	25	4		4	ZNF414	19	8577297	Silent	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		8577297	50551686	27	46504										
ARRDC2	0	genome.wustl.edu	37	chr19	18119536	18119536	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gcagataccggggagaccacGacgctgcctcctgggcgcca	14	15	0	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	19	18119536	18119536	G	A	SNP	ARRDC2	ENST00000222250	human	ensembl	69_37n	1	known	silent	c.291	p.T97	0.319	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643	26	0	0	38	11	22.45	-	-	-	A	18119536	G	A	18119536	2	1	514	1	0	0	0	0	0	0	0	1	987	1045	37	1		1	ARRDC2	19	18119536	Silent	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	9542239	18119536	41009447	28	46505										
SSTR4	0	genome.wustl.edu	37	chr20	23016498	23016498	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	cgcgcggtgctcagcgtcgaCggcctcaacatgttcaccag	12	15	3	0			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	20	23016498	23016498	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.378	p.D126	0.981	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	17	0	0	36	36	50	-	-	-	T	23016498	C	T	23016498	2	4	514	1	0	0	0	0	0	0	0	1	15291	535	19	1		1	SSTR4	20	23016498	Silent	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		23016498	40009022	29	46506										
MRAP	0	genome.wustl.edu	37	chr21	33686921	33686921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	gcctcaaactcgagctatttCctgtgatgagctccaagccc	8	14	1	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	21	33686921	33686921	C	G	SNP	MRAP	ENST00000339944	human	ensembl	69_37n	1	known	missense	c.266	p.S89C	0.000	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262	61	0	0	76	19	20	-	-	-	G	33686921	C	G	33686921	3	3	514	1	0	0	0	0	1	0	0	0	9825	855	30	2	593	2	MRAP	21	33686921	Missense_Mutation	SNP	C	TCGA-BH-A0C7-01B-11D-A10Y-09		33686921	14442974	30	46507										
NF2	0	genome.wustl.edu	37	chr22	30054223	30054223	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	aagatagctcaggacctggaGatgtacggtgtgaactactt	12	7	1	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	22	30054223	30054223	G	C	SNP	NF2	ENST00000338641	human	ensembl	69_37n	1	known	missense	c.645	p.E215D	1.000	pirsf_ERM,pfam_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,prints_Tropomyosin,pfscan_FERM_domain	-	no_errors	NF2	HGNC	ENSG00000186575	179	0	0	194	80	29.2	-	-	-	C	30054223	G	C	30054223	3	2	514	1	0	0	0	0	1	0	0	0	10429	933	33	2	671	2	NF2	22	30054223	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09		30054223	21250343	31	46508										
ZNF41	0	genome.wustl.edu	37	chrX	47307013	47307013	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tcccacatttactacattcaTagtgtctttctccagtatga	4	11	3	1			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	47307013	47307013	T	C	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.2186	p.Y729C	0.600	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	231	0	0	121	62	33.88	-	-	-	C	47307013	T	C	47307013	3	2	514	1	0	0	0	0	1	0	0	0	17985	1406	49	5	187	5	ZNF41	23	47307013	Missense_Mutation	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09		47307013	107963547	32	46509										
SLC9A6	0	genome.wustl.edu	37	chrX	135112303	135112303	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	tcctttagggttggtgttgaTtcagaccaagaacacttggt	11	7	1	3			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	135112303	135112303	T	C	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	silent	c.1629	p.D543	1.000	prints_Na/H_exchanger_6,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	595	0	0	426	81	15.98	-	-	-	C	135112303	T	C	135112303	2	2	514	1	0	0	0	0	0	0	0	1	14807	1490	52	5		5	SLC9A6	23	135112303	Silent	SNP	T	TCGA-BH-A0C7-01B-11D-A10Y-09	87805290	135112303	20158257	33	46510										
MAMLD1	0	genome.wustl.edu	37	chrX	149638801	149638802	+	Frame_Shift_Ins	INS	-	-	AAAG													0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	agcaagcaggggtctgctacINSaaagcagcaagggcccaccc							TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	149638801	149638802	-	AAAG	INS	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	frame_shift_ins	c.881_882	p.Q296fs	0.001:0.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	26	0	0	31	4	11.43	-	-	-	AAAG	149638802	-	AAAG	149638801	7	5	514	1	0	1	1	0	0	0	0	0	9279	478	17	0	966	0	MAMLD1	23	149638801	Frame_Shift_Ins	INS	-	TCGA-BH-A0C7-01B-11D-A10Y-09	14526498	149638801	5631759	34	46511										
L1CAM	0	genome.wustl.edu	37	chrX	153134145	153134145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.91292693902657	0.934659090909091	3.73863636363636	0.534090909090909	1	1	0	attggcataggggaagaagcGttcgtcctgaagcactgttg	14	7	0	2			TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	153134145	153134145	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.1423	p.R475C	0.741	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	52	0	0	164	35	17.59	-	-	-	A	153134145	G	A	153134145	3	1	514	1	0	0	0	0	1	0	0	0	8642	1145	40	1	2424	1	L1CAM	23	153134145	Missense_Mutation	SNP	G	TCGA-BH-A0C7-01B-11D-A10Y-09	3495344	153134145	2136415	35	46512										
HSPG2	0	genome.wustl.edu	37	chr1	22167762	22167762	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	acggggccctcggggagcacGgacactgtagggggccctgt	18	12	0	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	1	22167762	22167762	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.9345	p.S3115	0.622	smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	36	0	0	30	6	16.67	-	-	-	A	22167762	G	A	22167762	2	1	515	1	0	0	0	0	0	0	0	1	7484	1103	39	1		1	HSPG2	1	22167762	Silent	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09		22167762	227082859	1	46513										
NOSTRIN	0	genome.wustl.edu	37	chr2	169711935	169711936	+	Frame_Shift_Del	DEL	AG	AG	-													0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	accaaaattattgagactgcAgagagacattgaaaaagcct							TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	2	169711935	169711936	AG	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	69_37n	1	known	frame_shift_del	c.1100_1101	p.D369fs	0.993:0.663	superfamily_HR1_rho-bd	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072	137	1	0.72	79	43	34.96	-	-	-	-	169711936	AG	-	169711935	7	5	515	1	0	1	0	1	0	0	0	0	10618	188	7	0	1146	0	NOSTRIN	2	169711935	Frame_Shift_Del	DEL	AG	TCGA-BH-A0DD-01A-31D-A12Q-09		169711935	73487438	2	46514										
IDH1	0	genome.wustl.edu	37	chr2	209106864	209106864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	gagcttcaaactgggacttgTactgcctgggaaacaaaagg	12	8	1	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	2	209106864	209106864	T	C	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.704	p.Y235C	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	120	1	0.83	100	27	21.26	-	-	-	C	209106864	T	C	209106864	3	2	515	1	0	0	0	0	1	0	0	0	7548	1638	57	5	556	5	IDH1	2	209106864	Missense_Mutation	SNP	T	TCGA-BH-A0DD-01A-31D-A12Q-09	39394929	209106864	34092509	3	46515										
ZNF366	0	genome.wustl.edu	37	chr5	71739899	71739899	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	cctcgggtgtgcagagctgcTggctctggggggccaggcca	18	12	1	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	71739899	71739899	T	A	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.1919	p.Q640L	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	59	0	0	60	28	31.46	-	-	-	A	71739899	T	A	71739899	3	1	515	1	0	0	0	0	1	0	0	0	17966	1580	55	5	319	5	ZNF366	5	71739899	Missense_Mutation	SNP	T	TCGA-BH-A0DD-01A-31D-A12Q-09		71739899	109175361	4	46516										
PCDHGA9	0	genome.wustl.edu	37	chr5	140782907	140782907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	taactgatattaacgacagcGccccaaagttccaggccgaa	8	12	0	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	140782907	140782907	G	A	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	missense	c.388	p.A130T	0.342	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	54	0	0	27	11	28.95	-	-	-	A	140782907	G	A	140782907	3	1	515	1	0	0	0	0	1	0	0	0	11634	1087	38	1	390	1	PCDHGA9	5	140782907	Missense_Mutation	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09	69043008	140782907	40132353	5	46517										
EBF1	0	genome.wustl.edu	37	chr5	158523388	158523388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	tgaagccggtagtgaattccGttattggtcttttcgctgtt	11	7	1	2			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	158523388	158523388	G	A	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	silent	c.318	p.N106	0.968	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	209	2	0.94	132	47	26.11	-	-	-	A	158523388	G	A	158523388	2	1	515	1	0	0	0	0	0	0	0	1	4915	1136	40	1		1	EBF1	5	158523388	Silent	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09	17740481	158523388	22391872	6	46518										
RPS6	0	genome.wustl.edu	37	chr9	19380191	19380191	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	tcgccaccatcacctaccttCatcttgaagcagctgaacgc	6	16	3	2			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	9	19380191	19380191	C	T	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	133	1	0.75	150	67	30.88	-	-	-	T	19380191	C	T	19380191	3	4	515	1	0	0	0	0	1	0	0	0	13735	826	29	2	770	2	RPS6	9	19380191	Missense_Mutation	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09		19380191	121833240	7	46519										
LAMC3	0	genome.wustl.edu	37	chr9	133945108	133945108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	tcggcccagtgccacgagaaCggcacatgcgtgtgcaggcc	14	14	0	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	9	133945108	133945108	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	1	known	silent	c.2940	p.N980	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	16	0	0	22	8	26.67	-	-	-	T	133945108	C	T	133945108	2	4	515	1	0	0	0	0	0	0	0	1	8670	535	19	1		1	LAMC3	9	133945108	Silent	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09	114564917	133945108	7268323	8	46520										
IFITM3	0	genome.wustl.edu	37	chr11	319874	319874	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	aagatcagcactgggatgacGatgagcagaatggtcatgag	14	6	2	5			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	11	319874	319874	G	A	SNP	IFITM3	ENST00000399808	human	ensembl	69_37n	-1	known	silent	c.366	p.I122	0.000	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM3	HGNC	ENSG00000142089	121	1	0.82	191	42	18.03	-	-	-	A	319874	G	A	319874	2	1	515	1	0	0	0	0	0	0	0	1	7582	1048	37	1		1	IFITM3	11	319874	Silent	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09		319874	134686642	9	46521										
CACNA1C	0	genome.wustl.edu	37	chr12	2602428	2602428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	gcggcagtgccagaacggcaCggtgtgcaagcccggctggg	18	12	0	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	12	2602428	2602428	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.989	p.T330M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	84	0	0	94	24	20.17	-	-	-	T	2602428	C	T	2602428	3	4	515	1	0	0	0	0	1	0	0	0	2565	536	19	1	1015	1	CACNA1C	12	2602428	Missense_Mutation	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09		2602428	131249467	10	46522										
PTPRR	0	genome.wustl.edu	37	chr12	71286478	71286478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	ccaccacaattacatttgctGctgggattgggagattttcc	9	10	0	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	12	71286478	71286478	G	A	SNP	PTPRR	ENST00000283228	human	ensembl	69_37n	-1	known	missense	c.338	p.A113V	0.987	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	375	3	0.79	370	134	26.33	-	-	-	A	71286478	G	A	71286478	3	1	515	1	0	0	0	0	1	0	0	0	12893	1319	46	4	1687	4	PTPRR	12	71286478	Missense_Mutation	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09	68684050	71286478	62565417	11	46523										
DISP2	0	genome.wustl.edu	37	chr15	40660863	40660863	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	tggatggagagccccagctgCgcccgcctggggcctgacct	15	15	0	2			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	15	40660863	40660863	C	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	silent	c.2550	p.C850	0.198	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	11	0	0	9	4	30.77	-	-	-	T	40660863	C	T	40660863	2	4	515	1	0	0	0	0	0	0	0	1	4576	776	27	1		1	DISP2	15	40660863	Silent	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09		40660863	61870529	12	46524										
BTBD17	0	genome.wustl.edu	37	chr17	72352897	72352897	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	ggagttgcgccgctgcaggtCggcgtgcgccaggaagtcgc	18	12	0	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	17	72352897	72352897	C	A	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	missense	c.1336	p.D446Y	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	99	1	0.99	105	29	21.48	-	-	-	A	72352897	C	A	72352897	3	1	515	1	0	0	0	0	1	0	0	0	1550	884	31	3	104	3	BTBD17	17	72352897	Missense_Mutation	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09		72352897	8842313	13	46525			1	82		2	2	104	C		5.988819e-05
BTBD17	0	genome.wustl.edu	37	chr17	72353000	72353000	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	cgcgcccccaccagcaccgtCttctggaagctcacgcccgc	9	21	3	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	17	72353000	72353000	C	T	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	silent	c.1233	p.K411	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	19	0	0	21	7	25	-	-	-	T	72353000	C	T	72353000	2	4	515	1	0	0	0	0	0	0	0	1	1550	912	32	2		2	BTBD17	17	72353000	Silent	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09	103	72353000	8842210	14	46526			1	82		2	2	104	C		5.988819e-05
PKN1	0	genome.wustl.edu	37	chr19	14581448	14581448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	catcgtcaacgacgaggttcGctacccccgcttcctgtcgg	10	16	1	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	14581448	14581448	G	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	1	known	missense	c.2516	p.R839H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	29	0	0	48	13	20.97	-	-	-	A	14581448	G	A	14581448	3	1	515	1	0	0	0	0	1	0	0	0	12053	1087	38	1	2619	1	PKN1	19	14581448	Missense_Mutation	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09		14581448	44547535	15	46527										
SIN3B	0	genome.wustl.edu	37	chr19	16965008	16965008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	aaaacttcctccgctgcatcGcactcttcaaccaggagctg	7	15	2	0			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	16965008	16965008	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	missense	c.994	p.A332T	0.987	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	77	0	0	92	17	15.6	-	-	-	A	16965008	G	A	16965008	3	1	515	1	0	0	0	0	1	0	0	0	14415	1087	38	1	1024	1	SIN3B	19	16965008	Missense_Mutation	SNP	G	TCGA-BH-A0DD-01A-31D-A12Q-09	2383560	16965008	42163975	16	46528										
FCGRT	0	genome.wustl.edu	37	chr19	50017150	50017150	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	tgtctgcagaaagccacctcTccctcctgtaccaccttacc	5	18	2	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	50017150	50017150	T	A	SNP	FCGRT	ENST00000221466	human	ensembl	69_37n	1	known	missense	c.85	p.S29T	0.151	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	FCGRT	HGNC	ENSG00000104870	205	2	0.95	212	51	19.1	-	-	-	A	50017150	T	A	50017150	3	1	515	1	0	0	0	0	1	0	0	0	5832	1551	54	5	91	5	FCGRT	19	50017150	Missense_Mutation	SNP	T	TCGA-BH-A0DD-01A-31D-A12Q-09	33052142	50017150	9111833	17	46529										
MYL9	0	genome.wustl.edu	37	chr20	35177631	35177631	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	2	0.621766258859831	1.84175824175824	NA	1.84175824175824	0.333333333333333	0.930327025915261	0	acccgcatcctcaaacatggCgccaaggataaagacgacta	8	13	1	1			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	20	35177631	35177631	C	T	SNP	MYL9	ENST00000279022	human	ensembl	69_37n	1	known	silent	c.498	p.G166	0.611	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL9	HGNC	ENSG00000101335	74	0	0	99	23	18.85	-	-	-	T	35177631	C	T	35177631	2	4	515	1	0	0	0	0	0	0	0	1	10126	755	27	1		1	MYL9	20	35177631	Silent	SNP	C	TCGA-BH-A0DD-01A-31D-A12Q-09		35177631	27847889	18	46530										
DENND4B	0	genome.wustl.edu	37	chr1	153916788	153916788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tcctcagggatgggtgctccGttccctgcaagcccagctac	11	15	1	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-11A-23D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	ef386867-86e0-4f34-9dd4-1e008bf0d26b	1	153916788	153916788	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	silent	c.63	p.N21	0.954	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	42	0	0	22	10	30.3	-	-	-	A	153916788	G	A	153916788	2	1	516	1	0	0	0	0	0	0	0	1	4470	1136	40	1		1	DENND4B	1	153916788	Silent	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09		153916788	95333833	1	46531										
OR10J5	0	genome.wustl.edu	37	chr1	159505444	159505444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gccacatagcggtcatacccCattgcagtaagcaggaagca	10	12	1	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	1	159505444	159505444	C	T	SNP	OR10J5	ENST00000334857	human	ensembl	69_37n	-1	known	missense	c.354	p.M118I	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10J5	HGNC	ENSG00000184155	51	0	0	104	41	28.28	-	-	-	T	159505444	C	T	159505444	3	4	516	1	0	0	0	0	1	0	0	0	10985	594	21	4	577	4	OR10J5	1	159505444	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09	5588656	159505444	89745177	2	46532										
THSD7B	0	genome.wustl.edu	37	chr2	138425422	138425422	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tttcctaatatttacttcctAccttgtttggtaagtactaa	4	8	0	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	2	138425422	138425422	A	G	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.4739	p.Y1580C	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	392	0	0	244	51	17.29	-	-	-	G	138425422	A	G	138425422	3	3	516	1	0	0	0	0	1	0	0	0	15975	391	14	5	4744	5	THSD7B	2	138425422	Missense_Mutation	SNP	A	TCGA-BH-A0DE-01A-11D-A10Y-09		138425422	104773951	3	46533										
CSRNP1	0	genome.wustl.edu	37	chr3	39184985	39184985	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	atgtgaagctacagccagaaTagctgtgggtccagctggcc	13	10	0	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-11A-23D-A10Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	ef386867-86e0-4f34-9dd4-1e008bf0d26b	3	39184985	39184985	T	C	SNP	CSRNP1	ENST00000273153	human	ensembl	69_37n	-1	known	missense	c.1331	p.Y444C	0.019	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655	117	0	0	52	23	30.67	-	-	-	C	39184985	T	C	39184985	3	2	516	1	0	0	0	0	1	0	0	0	3995	1406	49	5	442	5	CSRNP1	3	39184985	Missense_Mutation	SNP	T	TCGA-BH-A0DE-01A-11D-A10Y-09		39184985	158837445	4	46534										
PXK	0	genome.wustl.edu	37	chr3	58398643	58398643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	cttagcaggatctggggccaGctcacctctcacgtccccgt	10	16	3	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	3	58398643	58398643	G	A	SNP	PXK	ENST00000356151	human	ensembl	69_37n	1	known	missense	c.1481	p.S494N	1.000	NULL	pfam_Phox,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PXK	HGNC	ENSG00000168297	52	0	0	127	56	30.6	-	-	-	A	58398643	G	A	58398643	3	1	516	1	0	0	0	0	1	0	0	0	12932	971	34	4	1547	4	PXK	3	58398643	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	19213658	58398643	139623787	5	46535										
EIF2A	0	genome.wustl.edu	37	chr3	150301029	150301029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tgaaagaacaagcagcaactGgaaaacagctagaaaaaaat	8	6	0	3			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	3	150301029	150301029	G	A	SNP	EIF2A	ENST00000460851	human	ensembl	69_37n	1	known	missense	c.1669	p.G557R	0.996	pirsf_TIF2A	pfam_TIF2A_beta_prop-like,pirsf_TIF2A	-	no_errors	EIF2A	HGNC	ENSG00000144895	186	0	0	138	28	16.87	-	-	-	A	150301029	G	A	150301029	3	1	516	1	0	0	0	0	1	0	0	0	5030	1349	47	4	1719	4	EIF2A	3	150301029	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	91902386	150301029	47721401	6	46536										
PIK3CA	0	genome.wustl.edu	37	chr3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tcctctctctgaaatcactgAgcaggagaaagattttctat	7	9	4	4			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	3	178936092	178936092	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1634	p.E545A	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	113	0	0	125	35	21.88	-	-	-	C	178936092	A	C	178936092	3	2	516	1	0	0	0	0	1	0	0	0	11987	304	11	5	1668	5	PIK3CA	3	178936092	Missense_Mutation	SNP	A	TCGA-BH-A0DE-01A-11D-A10Y-09	28635063	178936092	19086338	7	46537										
AFF1	0	genome.wustl.edu	37	chr4	87968539	87968539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tctcagacatttccacctccCtccctcccctcaaaaagtgt	3	18	2	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	4	87968539	87968539	C	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	silent	c.852	p.P284	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	42	0	0	52	11	17.46	-	-	-	T	87968539	C	T	87968539	2	4	516	1	0	0	0	0	0	0	0	1	356	668	24	4		4	AFF1	4	87968539	Silent	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		87968539	103185737	8	46538										
PCDHGC3	0	genome.wustl.edu	37	chr5	140856115	140856115	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	caggaaatgaaattggagatTagcgaggccgtggctccggg	16	7	0	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	5	140856115	140856115	T	G	SNP	PCDHGC3	ENST00000308177	human	ensembl	69_37n	1	known	missense	c.432	p.I144M	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184	25	0	0	41	19	31.67	-	-	-	G	140856115	T	G	140856115	3	3	516	1	0	0	0	0	1	0	0	0	11642	1742	61	5	434	5	PCDHGC3	5	140856115	Missense_Mutation	SNP	T	TCGA-BH-A0DE-01A-11D-A10Y-09		140856115	40059145	9	46539										
MAGI2	0	genome.wustl.edu	37	chr7	78636505	78636505	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gttgaggtagtgacgaaggtCtttatcaacaattcctccta	9	8	2	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	7	78636505	78636505	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.319	p.D107N	1.000	superfamily_PDZ,smart_Guanylate_kin/L-typ_Ca_channel	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	91	0	0	128	44	25.58	-	-	-	T	78636505	C	T	78636505	3	4	516	1	0	0	0	0	1	0	0	0	9262	913	32	2	4132	2	MAGI2	7	78636505	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		78636505	80502158	10	46540										
OR2A7	0	genome.wustl.edu	37	chr7	143956461	143956461	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gcaaaggagatgggcttggcTggatgcaggaggttcaccag	17	7	1	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	7	143956461	143956461	T	C	SNP	OR2A7	ENST00000493325	human	ensembl	69_37n	-1	known	silent	c.261	p.P87	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896	13	0	0	46	12	20.69	-	-	-	C	143956461	T	C	143956461	2	2	516	1	0	0	0	0	0	0	0	1	11055	1567	55	5		5	OR2A7	7	143956461	Silent	SNP	T	TCGA-BH-A0DE-01A-11D-A10Y-09	65319956	143956461	15182202	11	46541										
MLL3	0	genome.wustl.edu	37	chr7	151878893	151878894	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	tcaggtatcctttgtctttgINSaaacacatctgccctaggag							TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	7	151878893	151878894	-	A	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6052_6051	p.Q2017fs	1.000:0.997	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	50	0	0	90	33	26.83	-	-	-	A	151878894	-	A	151878893	7	5	516	1	0	1	1	0	0	0	0	0	9693	1299	45	0	8779	0	MLL3	7	151878893	Frame_Shift_Ins	INS	-	TCGA-BH-A0DE-01A-11D-A10Y-09	7922432	151878893	7259770	12	46542										
NFKB2	0	genome.wustl.edu	37	chr10	104158032	104158032	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gcaggcctttggggacttctCtcccacagatgtgcataaac	10	12	1	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	10	104158032	104158032	C	T	SNP	NFKB2	ENST00000189444	human	ensembl	69_37n	1	known	missense	c.830	p.S277F	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NF_Rel_dor	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	60	0	0	186	64	25.6	-	-	-	T	104158032	C	T	104158032	3	4	516	1	0	0	0	0	1	0	0	0	10448	913	32	2	864	2	NFKB2	10	104158032	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		104158032	31376715	13	46543										
MLL	0	genome.wustl.edu	37	chr11	118371701	118371701	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ttcccaaatctgtttacccaGgtgttccagggtatactgga	9	10	1	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	11	118371701	118371701	G	A	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	splice_site	c.6150-1	e25-1	1.000	-	-	-	no_errors	MLL	HGNC	ENSG00000118058	29	0	0	31	20	39.22	-	-	-	A	118371701	G	A	118371701	5	1	516	1	0	0	0	0	0	0	1	0	9691	1014	35	4	6247	4	MLL	11	118371701	Splice_Site	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09		118371701	16634815	14	46544										
BCL9L	0	genome.wustl.edu	37	chr11	118778200	118778200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	acaggcactcactgtgggtgGccccaatgggcttgtcgtcc	13	13	1	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	11	118778200	118778200	G	T	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.524	p.A175D	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	13	0	0	47	31	39.74	-	-	-	T	118778200	G	T	118778200	3	4	516	1	0	0	0	0	1	0	0	0	1386	1203	42	4	3999	4	BCL9L	11	118778200	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	406499	118778200	16228316	15	46545										
TSC22D1	0	genome.wustl.edu	37	chr13	45148301	45148301	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ggcctggggccatctgtgtaGaaaccattggttgctgttgt	14	8	1	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	13	45148301	45148301	G	T	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.1910	p.S637Y	0.509	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	21	0	0	74	27	26.73	-	-	-	T	45148301	G	T	45148301	3	4	516	1	0	0	0	0	1	0	0	0	16703	942	33	2	1452	2	TSC22D1	13	45148301	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09		45148301	70021577	16	46546										
FAM98B	0	genome.wustl.edu	37	chr15	38776827	38776827	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ggtggtggtggtggtggtggTggtggtggaggaggtggata	26	0	0	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	15	38776827	38776827	T	A	SNP	FAM98B	ENST00000559431	human	ensembl	69_37n	1	putative	missense	c.293	p.V98E	0.478	NULL	pfam_Uncharacterised_FAM98	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	FAM98B	HGNC	ENSG00000171262	33	0	0	85	20	19.05	-	-	-	A	38776827	T	A	38776827	3	1	516	1	0	0	0	0	1	0	0	0	5703	1683	59	5	1395	5	FAM98B	15	38776827	Missense_Mutation	SNP	T	TCGA-BH-A0DE-01A-11D-A10Y-09		38776827	63754565	17	46547										
LINGO1	0	genome.wustl.edu	37	chr15	77907723	77907723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gatgtagacgaggtcattgtCgccaacctccagtgacttga	11	10	1	3			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	15	77907723	77907723	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.526	p.D176N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	19	0	0	60	12	16.67	-	-	-	T	77907723	C	T	77907723	3	4	516	1	0	0	0	0	1	0	0	0	8870	884	31	1	1340	1	LINGO1	15	77907723	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09	39130896	77907723	24623669	18	46548										
GRIN2A	0	genome.wustl.edu	37	chr16	9923469	9923469	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	aacaccaggccccaaagaagCcatatagcttttccaattgt	6	12	0	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	16	9923469	9923469	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	nonsense	c.1818	p.W606*	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	49	0	0	70	29	29.29	-	-	-	T	9923469	C	T	9923469	4	4	516	1	0	0	0	0	0	1	0	0	6830	740	26	4	2596	4	GRIN2A	16	9923469	Nonsense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		9923469	80431284	19	46549										
ZCCHC14	0	genome.wustl.edu	37	chr16	87446722	87446722	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gcctgtacccccatggggctGgaggaggagctggagtactc	16	11	0	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	16	87446722	87446722	G	A	SNP	ZCCHC14	ENST00000561928	human	ensembl	69_37n	-1	known	nonsense	c.922	p.Q308*	0.964	NULL	pfam_Znf_CCHC,pfam_SAM_type1,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC14	HGNC	ENSG00000140948	11	0	0	31	23	42.59	-	-	-	A	87446722	G	A	87446722	4	1	516	1	0	0	0	0	0	1	0	0	17679	1335	47	4	1589	4	ZCCHC14	16	87446722	Nonsense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	77523253	87446722	2908031	20	46550										
CCDC144A	0	genome.wustl.edu	37	chr17	16665800	16665800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	gaaagatataaggaactctaCctagaagaagtgaaagttag	10	4	1	4			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	17	16665800	16665800	C	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	silent	c.3840	p.Y1280	0.580	pfam_DUF3496	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	120	0	0	55	13	19.12	-	-	-	T	16665800	C	T	16665800	2	4	516	1	0	0	0	0	0	0	0	1	2802	518	18	4		4	CCDC144A	17	16665800	Silent	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		16665800	64529410	21	46551										
TUBD1	0	genome.wustl.edu	37	chr17	57958454	57958454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ttatagattcttcatgcctgGgtccatgaacagagtaacta	8	8	2	3			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	17	57958454	57958454	G	A	SNP	TUBD1	ENST00000325752	human	ensembl	69_37n	-1	known	missense	c.338	p.P113L	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423	68	0	0	122	33	21.29	-	-	-	A	57958454	G	A	57958454	3	1	516	1	0	0	0	0	1	0	0	0	16859	1232	43	4	1047	4	TUBD1	17	57958454	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	41292654	57958454	23236756	22	46552										
WIZ	0	genome.wustl.edu	37	chr19	15559037	15559037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ggccccaccctcgatgttctCccttggcgccgggccaggca	12	18	1	0			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	19	15559037	15559037	C	T	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	0.354	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	8	0	0	33	13	28.26	-	-	-	T	15559037	C	T	15559037	3	4	516	1	0	0	0	0	1	0	0	0	17472	864	30	2	2330	2	WIZ	19	15559037	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		15559037	43569946	23	46553										
YJEFN3	0	genome.wustl.edu	37	chr19	19645891	19645891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	agcagaggacggtgctggtcGtgtgtggcccggagcagaac	18	9	0	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	19	19645891	19645891	G	A	SNP	YJEFN3	ENST00000514277	human	ensembl	69_37n	1	known	missense	c.367	p.V123M	0.962	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	-	no_errors	YJEFN3	HGNC	ENSG00000250067	23	0	0	58	25	30.12	-	-	-	A	19645891	G	A	19645891	3	1	516	1	0	0	0	0	1	0	0	0	17581	1145	40	1	381	1	YJEFN3	19	19645891	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	4086854	19645891	39483092	24	46554										
ARHGAP35	0	genome.wustl.edu	37	chr19	47492898	47492898	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ctgcctgaccccctggtcccGtataacatgcagatcgactt	8	15	0	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	19	47492898	47492898	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	silent	c.4002	p.P1334	0.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	33	0	0	123	36	22.64	-	-	-	A	47492898	G	A	47492898	2	1	516	1	0	0	0	0	0	0	0	1	6846	1132	40	1		1	ARHGAP35	19	47492898	Silent	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09	27847007	47492898	11636085	25	46555										
PLCB4	0	genome.wustl.edu	37	chr20	9417740	9417740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	aaatgtgacccctcagagtaGctctgagctcagaccaacca	8	13	3	4			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	20	9417740	9417740	G	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2669	p.S890I	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	37	0	0	83	14	14.29	-	-	-	T	9417740	G	T	9417740	3	4	516	1	0	0	0	0	1	0	0	0	12104	971	34	4	2811	4	PLCB4	20	9417740	Missense_Mutation	SNP	G	TCGA-BH-A0DE-01A-11D-A10Y-09		9417740	53607780	26	46556										
GPR50	0	genome.wustl.edu	37	chrX	150349052	150349052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	ttcgtgagatgcaggaggccCgtaccctggcccgcgcccgt	14	15	0	1			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	4128dbf9-bf2a-4ff9-9b71-195541e453ac	X	150349052	150349052	C	T	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	1	known	missense	c.997	p.R333C	0.043	prints_Mel_rcpt_1X	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	27	0	0	70	38	35.19	-	-	-	T	150349052	C	T	150349052	3	4	516	1	0	0	0	0	1	0	0	0	6747	652	23	1	1003	1	GPR50	23	150349052	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09		150349052	4921508	27	46557										
PLXNB3	0	genome.wustl.edu	37	chrX	153041490	153041490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.898172300455129	1.01367521367521	NA	1.01367521367521	0.4	0.991179622791967	0	cgtggagttccagcccctgaCgctgatggtgctggtggggc	17	11	0	2			TCGA-BH-A0DE-01A-11D-A10Y-09	TCGA-BH-A0DE-11A-23D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bddc0994-a57b-4fd0-9b62-bf7f9f4ba403	ef386867-86e0-4f34-9dd4-1e008bf0d26b	X	153041490	153041490	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	missense	c.4619	p.T1540M	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	77	0	0	34	15	30.61	-	-	-	T	153041490	C	T	153041490	3	4	516	1	0	0	0	0	1	0	0	0	12199	536	19	1	4770	1	PLXNB3	23	153041490	Missense_Mutation	SNP	C	TCGA-BH-A0DE-01A-11D-A10Y-09	2692438	153041490	2229070	28	46558										
RNF207	0	genome.wustl.edu	37	chr1	6272428	6272428	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	ctgcaactggacgtgcagatCgcctcggagcacgcctcctt	11	15	0	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	1	6272428	6272428	C	T	SNP	RNF207	ENST00000377939	human	ensembl	69_37n	1	novel	silent	c.1434	p.I478	0.310	NULL	pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	RNF207	HGNC	ENSG00000158286	39	0	0	22	8	26.67	-	-	-	T	6272428	C	T	6272428	2	4	517	1	0	0	0	0	0	0	0	1	13560	874	31	1		1	RNF207	1	6272428	Silent	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		6272428	242978193	1	46559										
KDM4A	0	genome.wustl.edu	37	chr1	44126037	44126037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	ctggaaaaatcttacattcaAtcctccaatctatggtgcag	6	10	3	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	1	44126037	44126037	A	G	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.383	p.N128S	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	293	0	0	242	61	20.13	-	-	-	G	44126037	A	G	44126037	3	3	517	1	0	0	0	0	1	0	0	0	8182	101	4	5	393	5	KDM4A	1	44126037	Missense_Mutation	SNP	A	TCGA-BH-A0DG-01A-21D-A12Q-09	37853609	44126037	205124584	2	46560										
CRNN	0	genome.wustl.edu	37	chr1	152382164	152382164	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	catcctggccctgtgctgagGaaacactggtatgcaagttg	12	10	0	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	1	152382164	152382164	G	T	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	missense	c.1394	p.S465Y	0.002	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	142	0	0	261	46	14.98	-	-	-	T	152382164	G	T	152382164	3	4	517	1	0	0	0	0	1	0	0	0	3922	1174	41	2	97	2	CRNN	1	152382164	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	108256127	152382164	96868457	3	46561										
DNM3	0	genome.wustl.edu	37	chr1	172277938	172277938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	aggatgtcgacagctggaagGcatctctactaagagctggg	14	8	1	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	1	172277938	172277938	G	A	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.1840	p.A614T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	132	0	0	111	62	35.84	-	-	-	A	172277938	G	A	172277938	3	1	517	1	0	0	0	0	1	0	0	0	4708	1203	42	4	1902	4	DNM3	1	172277938	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	19895774	172277938	76972683	4	46562										
AIDA	0	genome.wustl.edu	37	chr1	222843570	222843570	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tttttaggcttgtagtgtttGaattcaaagaagatagctgc	10	4	1	3			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	1	222843570	222843570	G	C	SNP	AIDA	ENST00000340020	human	ensembl	69_37n	-1	known	missense	c.729	p.F243L	1.000	pfam_AIDA	pfam_AIDA,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063	277	0	0	353	59	14.25	-	-	-	C	222843570	G	C	222843570	3	2	517	1	0	0	0	0	1	0	0	0	423	1281	45	2	199	2	AIDA	1	222843570	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	50565632	222843570	26407051	5	46563										
ZDBF2	0	genome.wustl.edu	37	chr2	207175935	207175935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tatcattagaaagtatatttCgaaatactctgtctttttac	4	6	3	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	2	207175935	207175935	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.6683	p.S2228L	0.006	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	100	0	0	96	17	14.91	-	-	-	T	207175935	C	T	207175935	3	4	517	1	0	0	0	0	1	0	0	0	17695	893	31	1	6693	1	ZDBF2	2	207175935	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		207175935	36023438	6	46564										
SRD5A1	0	genome.wustl.edu	37	chr5	6663054	6663054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tcttcacgttttgttttttaTctggtagagcaaaagagcat	8	6	3	2			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	5	6663054	6663054	T	C	SNP	SRD5A1	ENST00000274192	human	ensembl	69_37n	1	known	missense	c.688	p.S230P	0.000	pfam_3-oxo-5_a-steroid_4-DH_C,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545	415	0	0	377	88	18.92	-	-	-	C	6663054	T	C	6663054	3	2	517	1	0	0	0	0	1	0	0	0	15229	1435	50	5	702	5	SRD5A1	5	6663054	Missense_Mutation	SNP	T	TCGA-BH-A0DG-01A-21D-A12Q-09		6663054	174252206	7	46565										
CYFIP2	0	genome.wustl.edu	37	chr5	156760407	156760407	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	ccgccatgtataaatccttgGaccaagctatcagccgcttt	7	13	1	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	5	156760407	156760407	G	T	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.2413	p.D805Y	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	216	0	0	226	69	23.39	-	-	-	T	156760407	G	T	156760407	3	4	517	1	0	0	0	0	1	0	0	0	4169	1174	41	2	2416	2	CYFIP2	5	156760407	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	150097353	156760407	24154853	8	46566										
PKHD1	0	genome.wustl.edu	37	chr6	51512917	51512917	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	agggactctactcttcgattCtagaaatgggaataggagga	12	6	3	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	6	51512917	51512917	C	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	splice_site	c.11311-1	e62-1	1.000	-	-	-	no_errors	PKHD1	HGNC	ENSG00000170927	190	0	0	116	33	22.15	-	-	-	G	51512917	C	G	51512917	5	3	517	1	0	0	0	0	0	0	1	0	12045	927	32	2	934	2	PKHD1	6	51512917	Splice_Site	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		51512917	119602150	9	46567										
GOLGA2	0	genome.wustl.edu	37	chr9	131038206	131038206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	cggccaatttgctctgtcggGtttcttccgacatcgcgggg	13	12	2	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	9	131038206	131038206	G	A	SNP	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	missense	c.50	p.T17I	1.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	35	0	0	37	17	31.48	-	-	-	A	131038206	G	A	131038206	3	1	517	1	0	0	0	0	1	0	0	0	6604	1261	44	4	3062	4	GOLGA2	9	131038206	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09		131038206	10175225	10	46568										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	96	0	0	104	21	16.8	-	-	-	G	8115875	-	G	8115874	7	5	517	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-BH-A0DG-01A-21D-A12Q-09		8115874	127418873	11	46569										
SCD	0	genome.wustl.edu	37	chr10	102108102	102108102	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	aagttctacacctggctttgGggtaagcagcctccctgtcc	10	13	1	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	10	102108102	102108102	G	C	SNP	SCD	ENST00000370355	human	ensembl	69_37n	1	known	missense	c.309	p.W103C	1.000	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD	HGNC	ENSG00000099194	185	0	0	182	30	14.15	-	-	-	C	102108102	G	C	102108102	3	2	517	1	0	0	0	0	1	0	0	0	13973	1246	43	4	315	4	SCD	10	102108102	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	93992228	102108102	33426645	12	46570										
TNNT3	0	genome.wustl.edu	37	chr11	1954967	1954967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	acaggacatccagaagaagcGtcagaacaaagacctaatgg	10	9	1	4			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	11	1954967	1954967	G	A	SNP	TNNT3	ENST00000397301	human	ensembl	69_37n	1	known	missense	c.221	p.R74H	1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT3	HGNC	ENSG00000130595	43	0	0	53	13	19.7	-	-	-	A	1954967	G	A	1954967	3	1	517	1	0	0	0	0	1	0	0	0	16427	1145	40	1	263	1	TNNT3	11	1954967	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09		1954967	133051549	13	46571										
ME3	0	genome.wustl.edu	37	chr11	86382866	86382866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	cttcaggggcacagggcgcgCcgggccaggcttggagtggc	19	12	1	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	11	86382866	86382866	C	T	SNP	ME3	ENST00000359636	human	ensembl	69_37n	-1	known	missense	c.121	p.A41T	0.000	NULL	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376	18	0	0	40	13	24.53	-	-	-	T	86382866	C	T	86382866	3	4	517	1	0	0	0	0	1	0	0	0	9490	739	26	4	1749	4	ME3	11	86382866	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09	84427899	86382866	48623650	14	46572										
KIAA1033	0	genome.wustl.edu	37	chr12	105521054	105521054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	cttttctacaacagaaagctCaatcacttaccaagtaggtt	5	10	3	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	12	105521054	105521054	C	G	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.1186	p.Q396E	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	218	0	0	177	30	14.49	-	-	-	G	105521054	C	G	105521054	3	3	517	1	0	0	0	0	1	0	0	0	8258	827	29	2	1236	2	KIAA1033	12	105521054	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		105521054	28330841	15	46573										
POLE	0	genome.wustl.edu	37	chr12	133249314	133249314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	gtccagcacgtgtccgtcgtCcgtcagcttattgaactcct	9	14	1	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	12	133249314	133249314	C	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.1618	p.D540Y	0.140	smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	224	0	0	249	64	20.45	-	-	-	A	133249314	C	A	133249314	3	1	517	1	0	0	0	0	1	0	0	0	12270	855	30	2	5415	2	POLE	12	133249314	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09	27728260	133249314	602581	16	46574										
YES1	0	genome.wustl.edu	37	chr18	743380	743380	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	aggtttcacagttggacacaCagttgtcaacttgtggcata	10	8	2	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	18	743380	743380	C	G	SNP	YES1	ENST00000314574	human	ensembl	69_37n	-1	known	missense	c.760	p.V254L	1.000	pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	YES1	HGNC	ENSG00000176105	126	0	0	84	46	35.38	-	-	-	G	743380	C	G	743380	3	3	517	1	0	0	0	0	1	0	0	0	17571	478	17	4	895	4	YES1	18	743380	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		743380	77333868	17	46575										
C3	0	genome.wustl.edu	37	chr19	6697369	6697369	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	actcaccacgaccttcagggActtcctgacaccgtcactga	7	16	3	2			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	19	6697369	6697369	A	C	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.2782	p.S928A	0.067	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	65	0	0	50	13	20.63	-	-	-	C	6697369	A	C	6697369	3	2	517	1	0	0	0	0	1	0	0	0	2224	275	10	5	2293	5	C3	19	6697369	Missense_Mutation	SNP	A	TCGA-BH-A0DG-01A-21D-A12Q-09		6697369	52431614	18	46576										
STXBP2	0	genome.wustl.edu	37	chr19	7704692	7704692	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tttgctgagccccacggagaAggtgcctacatgagtgagcg	14	10	0	4			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	19	7704692	7704692	A	C	SNP	STXBP2	ENST00000441779	human	ensembl	69_37n	1	known	missense	c.245	p.K82T	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	122	0	0	162	39	19.4	-	-	-	C	7704692	A	C	7704692	3	2	517	1	0	0	0	0	1	0	0	0	15444	86	3	5	259	5	STXBP2	19	7704692	Missense_Mutation	SNP	A	TCGA-BH-A0DG-01A-21D-A12Q-09	1007323	7704692	51424291	19	46577										
SHANK1	0	genome.wustl.edu	37	chr19	51207386	51207386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	ctgtcactcacccacatcctGttctcggtggtttcggatca	8	14	4	0			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	19	51207386	51207386	G	T	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.1213	p.Q405K	0.987	smart_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	150	0	0	207	49	19.14	-	-	-	T	51207386	G	T	51207386	3	4	517	1	0	0	0	0	1	0	0	0	14353	1386	48	4	5332	4	SHANK1	19	51207386	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09	43502694	51207386	7921597	20	46578										
KRTAP24-1	0	genome.wustl.edu	37	chr21	31655201	31655201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	agtgagttctgtatgatgtgGtactgcagacaccaggatag	13	6	1	3			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	21	31655201	31655201	G	A	SNP	KRTAP24-1	ENST00000340345	human	ensembl	69_37n	-1	known	missense	c.50	p.T17I	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694	40	0	0	50	8	13.56	-	-	-	A	31655201	G	A	31655201	3	1	517	1	0	0	0	0	1	0	0	0	8596	1261	44	4	718	4	KRTAP24-1	21	31655201	Missense_Mutation	SNP	G	TCGA-BH-A0DG-01A-21D-A12Q-09		31655201	16474694	21	46579										
GPR143	0	genome.wustl.edu	37	chrX	9707633	9707633	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	tggggatgggtgagccccctCagcagccgaggtggtcagtg	18	10	2	1			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	X	9707633	9707633	C	T	SNP	GPR143	ENST00000380929	human	ensembl	69_37n	-1	known	missense	c.1072	p.E358K	0.311	pfam_Ocular_alb1	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850	98	0	0	88	12	12	-	-	-	T	9707633	C	T	9707633	3	4	517	1	0	0	0	0	1	0	0	0	6701	835	29	2	210	2	GPR143	23	9707633	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09		9707633	145562927	22	46580										
MAGEH1	0	genome.wustl.edu	37	chrX	55478908	55478908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.321225887420631	2.13986013986014	4.17272727272727	0.869318181818182	0.485714285714286	1	0	ctcagaggcctccgagacccCtatggccgcctctgtggtag	12	15	2	2			TCGA-BH-A0DG-01A-21D-A12Q-09	TCGA-BH-A0DG-11A-43D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec4d4cbc-d5d1-418d-a292-cad9576624fd	d0d81468-73f6-4a8a-8f00-b99bd127c228	X	55478908	55478908	C	A	SNP	MAGEH1	ENST00000342972	human	ensembl	69_37n	1	known	missense	c.101	p.P34H	0.004	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEH1	HGNC	ENSG00000187601	18	0	0	19	5	20.83	-	-	-	A	55478908	C	A	55478908	3	1	517	1	0	0	0	0	1	0	0	0	9259	681	24	4	103	4	MAGEH1	23	55478908	Missense_Mutation	SNP	C	TCGA-BH-A0DG-01A-21D-A12Q-09	45771275	55478908	99791652	23	46581										
RAD54L	0	genome.wustl.edu	37	chr1	46738424	46738424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	agaattgcttgagggcaagaTgagtgtgtcttccctttctt	11	7	2	4			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	46738424	46738424	T	C	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	1	known	missense	c.1325	p.M442T	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	189	0	0	117	57	32.76	-	-	-	C	46738424	T	C	46738424	3	2	518	1	0	0	0	0	1	0	0	0	13076	1464	51	5	1371	5	RAD54L	1	46738424	Missense_Mutation	SNP	T	TCGA-BH-A0DH-01A-11D-A099-09		46738424	202512197	1	46582										
HMCN1	0	genome.wustl.edu	37	chr1	186072719	186072719	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gcccctaaaatgacctggatGaaagatggccggccccttcc	10	14	0	3			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	186072719	186072719	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.10689	p.M3563I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	118	0	0	56	29	34.12	-	-	-	A	186072719	G	A	186072719	3	1	518	1	0	0	0	0	1	0	0	0	7271	1290	45	2	10963	2	HMCN1	1	186072719	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	139334295	186072719	63177902	2	46583										
PTPN4	0	genome.wustl.edu	37	chr2	120702704	120702704	+	Missense_Mutation	SNP	A	A	C													0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gcctccagctttaccacccaAacagtcaaagaaaaacagtt							TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	120702704	120702704	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.1403	p.K468T	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	95	0	0	50	37	42.53	-	-	-	C	120702704	A	C	120702704	3	2	518	1	0	0	0	0	1	0	0	0	12873	14	1	5	1461	5	PTPN4	2	120702704	Missense_Mutation	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09		120702704	122496669	3	46584	384	2								
PTPN4	0	genome.wustl.edu	37	chr2	120702705	120702705	+	Missense_Mutation	SNP	A	A	C													0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	cctccagctttaccacccaaAcagtcaaagaaaaacagttg							TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	120702705	120702705	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.1404	p.K468N	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	95	0	0	50	38	43.18	-	-	-	C	120702705	A	C	120702705	3	2	518	1	0	0	0	0	1	0	0	0	12873	40	2	5	1462	5	PTPN4	2	120702705	Missense_Mutation	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09	1	120702705	122496668	4	46585	384	2								
UBR3	0	genome.wustl.edu	37	chr2	170897490	170897490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	aatgatgccacaacccttacGcaaaggtatgtctttataat	6	9	1	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	170897490	170897490	G	A	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.4655	p.R1552H	0.956	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	99	0	0	50	30	37.5	-	-	-	A	170897490	G	A	170897490	3	1	518	1	0	0	0	0	1	0	0	0	17000	1087	38	1	4781	1	UBR3	2	170897490	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	50194785	170897490	72301883	5	46586										
CERKL	0	genome.wustl.edu	37	chr2	182438569	182438569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	cttcttttttgtgactttggGggttaaggagtatttttaat	10	3	1	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	182438569	182438569	G	T	SNP	CERKL	ENST00000339098	human	ensembl	69_37n	-1	known	missense	c.524	p.P175H	1.000	pfam_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452	273	0	0	112	67	37.22	-	-	-	T	182438569	G	T	182438569	3	4	518	1	0	0	0	0	1	0	0	0	3297	1232	43	4	1200	4	CERKL	2	182438569	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	11541079	182438569	60760804	6	46587										
MUC4	0	genome.wustl.edu	37	chr3	195506117	195506117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	agtgtcggtgacaggaagagGcgtggtgtcacctgtggata	17	6	1	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	3	195506117	195506117	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12334	p.P4112T	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	17	0	0	64	24	27.27	-	-	-	T	195506117	G	T	195506117	3	4	518	1	0	0	0	0	1	0	0	0	10050	1203	42	4		4	MUC4	3	195506117	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		195506117	2516313	7	46588										
MUC4	0	genome.wustl.edu	37	chr3	195513168	195513168	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gaggaagtgtcggtgacaggAagaggggtggcctgacctgt	19	6	0	3			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	3	195513168	195513168	A	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5283	p.L1761	0.008	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	565	0	0	714	104	12.64	-	-	-	T	195513168	A	T	195513168	2	4	518	1	0	0	0	0	0	0	0	1	10050	233	9	5		5	MUC4	3	195513168	Silent	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09	7051	195513168	2509262	8	46589										
LETM1	0	genome.wustl.edu	37	chr4	1838164	1838164	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tgctgcccttaccttgagtgActgagtctcaaatgtggatg	11	9	1	3			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	1838164	1838164	A	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.730	p.S244T	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	102	0	0	78	31	28.44	-	-	-	T	1838164	A	T	1838164	3	4	518	1	0	0	0	0	1	0	0	0	8788	275	10	5	1533	5	LETM1	4	1838164	Missense_Mutation	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09		1838164	189316112	9	46590										
FAT4	0	genome.wustl.edu	37	chr4	126239428	126239428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	caacggaacagtgcgcttctCcttacaagaggcagagactg	11	11	1	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	126239428	126239428	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.1862	p.S621F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	59	0	0	49	23	31.94	-	-	-	T	126239428	C	T	126239428	3	4	518	1	0	0	0	0	1	0	0	0	5738	855	30	2	1864	2	FAT4	4	126239428	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09	124401264	126239428	64914848	10	46591										
NEK1	0	genome.wustl.edu	37	chr4	170476976	170476976	+	Frame_Shift_Del	DEL	C	C	-													0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ctgcagccccataaggaaatCctggacgaactccaggcaga							TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	170476976	170476976	C	-	DEL	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	frame_shift_del	c.1457	p.G486fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	134	0	0	89	35	28.23	-	-	-	-	170476976	C	-	170476976	7	5	518	1	0	1	0	1	0	0	0	0	10393	855	30	0	2391	0	NEK1	4	170476976	Frame_Shift_Del	DEL	C	TCGA-BH-A0DH-01A-11D-A099-09	44237548	170476976	20677300	11	46592										
TMCO6	0	genome.wustl.edu	37	chr5	140023514	140023514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ttccagaaacagcccagtctGctccctgagggcctttggct	10	14	1	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	5	140023514	140023514	G	A	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	1	known	silent	c.1086	p.L362	0.983	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	145	0	0	96	64	39.75	-	-	-	A	140023514	G	A	140023514	2	1	518	1	0	0	0	0	0	0	0	1	16095	1306	46	4		4	TMCO6	5	140023514	Silent	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		140023514	40891746	12	46593										
REV3L	0	genome.wustl.edu	37	chr6	111697571	111697571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	aacagatggaatatcttcttCataatcaaaaatactacttt	3	7	4	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	111697571	111697571	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663K	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	97	0	0	42	6	12.5	-	-	-	T	111697571	C	T	111697571	3	4	518	1	0	0	0	0	1	0	0	0	13323	835	29	2	7485	2	REV3L	6	111697571	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09		111697571	59417496	13	46594										
LPA	0	genome.wustl.edu	37	chr6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tgtcatagaggaccaagactGacatgtccttcctgtgacag	10	10	1	4			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	161015051	161015051	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	nonsense	c.3568	p.Q1190*	0.402	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	240	0	0	71	55	43.65	-	-	-	A	161015051	G	A	161015051	4	1	518	1	0	0	0	0	0	1	0	0	8969	1299	45	2	2626	2	LPA	6	161015051	Nonsense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	49317480	161015051	10100016	14	46595										
HECW1	0	genome.wustl.edu	37	chr7	43548644	43548645	+	Frame_Shift_Del	DEL	TT	TT	-													0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tcaacccttactatggactcTttgagtactcggcaaatgat							TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	43548644	43548645	TT	-	DEL	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	frame_shift_del	c.3943_3944	p.F1315fs	1.000:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	157	0	0	101	47	31.76	-	-	-	-	43548645	TT	-	43548644	7	5	518	1	0	1	0	1	0	0	0	0	7093	1609	56	0	4029	0	HECW1	7	43548644	Frame_Shift_Del	DEL	TT	TCGA-BH-A0DH-01A-11D-A099-09		43548644	115590019	15	46596										
AUTS2	0	genome.wustl.edu	37	chr7	70252221	70252221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	actcaatgttcggccacaagGatggccccagtgtgcagaac	11	12	1	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	70252221	70252221	G	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	missense	c.2335	p.D779Y	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	59	0	0	30	20	39.22	-	-	-	T	70252221	G	T	70252221	3	4	518	1	0	0	0	0	1	0	0	0	1229	1174	41	2	2550	2	AUTS2	7	70252221	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	26703577	70252221	88886442	16	46597										
MELK	0	genome.wustl.edu	37	chr9	36651752	36651752	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ttttcctttagtggcagtatGatcacctcacggctacctat	7	11	2	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	36651752	36651752	G	A	SNP	MELK	ENST00000298048	human	ensembl	69_37n	1	known	missense	c.931	p.D311N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304	160	0	0	99	54	35.29	-	-	-	A	36651752	G	A	36651752	3	1	518	1	0	0	0	0	1	0	0	0	9541	1290	45	2	973	2	MELK	9	36651752	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		36651752	104561679	17	46598										
ODF2	0	genome.wustl.edu	37	chr9	131256860	131256860	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	atcctgaagatcacggaggcGaagctggctgagtgccaaga	14	9	1	4			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	131256860	131256860	G	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	silent	c.1824	p.A608	0.657	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	64	0	0	39	20	33.9	-	-	-	A	131256860	G	A	131256860	2	1	518	1	0	0	0	0	0	0	0	1	10900	1045	37	1		1	ODF2	9	131256860	Silent	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	94605108	131256860	9956571	18	46599										
SEC24C	0	genome.wustl.edu	37	chr10	75527697	75527697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tcttccctaaccagtatgtgGatgtggccacactctctgtt	8	12	2	0			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	10	75527697	75527697	G	A	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	missense	c.2113	p.D705N	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	125	0	0	61	37	37.76	-	-	-	A	75527697	G	A	75527697	3	1	518	1	0	0	0	0	1	0	0	0	14084	1174	41	2	2167	2	SEC24C	10	75527697	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		75527697	60007050	19	46600										
PGAP2	0	genome.wustl.edu	37	chr11	3819319	3819319	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ccacgtgcggagcctgagggCcctcttggaaggtctgtctg	15	12	3	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	3819319	3819319	C	T	SNP	PGAP2	ENST00000489571	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGAP2	HGNC	ENSG00000148985	33	0	0	16	8	33.33	-	-	-	T	3819319	C	T	3819319	1	4	518	0	1	0	0	0	0	0	0	0	11852	754	26	4		4	PGAP2	11	3819319	RNA	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09		3819319	131187197	20	46601										
RASGRP2	0	genome.wustl.edu	37	chr11	64497587	64497587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gctctcctggaagttgtgtaCgaagcccatgcgccccccca	10	16	1	0			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	64497587	64497587	C	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.1492	p.V498I	1.000	pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	31	0	0	15	16	51.61	-	-	-	T	64497587	C	T	64497587	3	4	518	1	0	0	0	0	1	0	0	0	13158	536	19	1	353	1	RASGRP2	11	64497587	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09	60678268	64497587	70508929	21	46602										
TDRD3	0	genome.wustl.edu	37	chr13	61083925	61083925	+	Frame_Shift_Del	DEL	C	C	-													0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gaaagctctgaagcacataaCggaaatgggcttcagtaagg							TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	13	61083925	61083925	C	-	DEL	TDRD3	ENST00000535286	human	ensembl	69_37n	1	known	frame_shift_del	c.887	p.T296fs	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	114	0	0	22	41	61.19	-	-	-	-	61083925	C	-	61083925	7	5	518	1	0	1	0	1	0	0	0	0	15827	536	19	0	921	0	TDRD3	13	61083925	Frame_Shift_Del	DEL	C	TCGA-BH-A0DH-01A-11D-A099-09		61083925	54085953	22	46603										
IGDCC3	0	genome.wustl.edu	37	chr15	65621396	65621396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ggcctctgtggtcttcgcctCcgtcgtcttcccctccatca	8	18	4	0			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	15	65621396	65621396	C	T	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.2296	p.E766K	0.002	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	30	0	0	13	11	45.83	-	-	-	T	65621396	C	T	65621396	3	4	518	1	0	0	0	0	1	0	0	0	7622	864	30	2	152	2	IGDCC3	15	65621396	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09		65621396	36909996	23	46604										
CTCF	0	genome.wustl.edu	37	chr16	67645922	67645922	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ggcgttcaaatttggatcgtCacatgaaaagccacactgat	9	9	2	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	16	67645922	67645922	C	A	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.850	p.H284N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	112	0	0	28	37	56.92	-	-	-	A	67645922	C	A	67645922	3	1	518	1	0	0	0	0	1	0	0	0	4032	826	29	2	856	2	CTCF	16	67645922	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09		67645922	22708831	24	46605										
ALOX12	0	genome.wustl.edu	37	chr17	6900318	6900318	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	taccgctgggtgcagggcgaGgacatcctgagcctgcccga	15	13	0	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	6900318	6900318	G	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	missense	c.309	p.E103D	0.010	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	16	0	0	17	7	28	-	-	-	C	6900318	G	C	6900318	3	2	518	1	0	0	0	0	1	0	0	0	536	991	35	4	315	4	ALOX12	17	6900318	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		6900318	74294892	25	46606										
DNAH9	0	genome.wustl.edu	37	chr17	11597194	11597194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tttatttgcaggattctaaaAggtttgaaggcatcgacatt	9	5	1	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	11597194	11597194	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.4624	p.R1542G	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	82	0	0	59	21	26.25	-	-	-	G	11597194	A	G	11597194	3	3	518	1	0	0	0	0	1	0	0	0	4643	63	3	5	4706	5	DNAH9	17	11597194	Missense_Mutation	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09	4696876	11597194	69598016	26	46607										
LASP1	0	genome.wustl.edu	37	chr17	37074895	37074895	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gtatgactacagcgccgccgAcgaggacgaggtctccttcc	12	14	1	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	17	37074895	37074895	A	C	SNP	LASP1	ENST00000318008	human	ensembl	69_37n	1	known	missense	c.650	p.D217A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	LASP1	HGNC	ENSG00000002834	30	0	0	34	18	33.96	-	-	-	C	37074895	A	C	37074895	3	2	518	1	0	0	0	0	1	0	0	0	8691	275	10	5	676	5	LASP1	17	37074895	Missense_Mutation	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09	25477701	37074895	44120315	27	46608										
CBX2	0	genome.wustl.edu	37	chr17	77758181	77758181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	aaaatcccgaaggcccccagCggtggggctgtggagcagaa	15	11	0	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77758181	77758181	C	T	SNP	CBX2	ENST00000310942	human	ensembl	69_37n	1	known	silent	c.939	p.S313	0.013	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	40	0	0	13	14	51.85	-	-	-	T	77758181	C	T	77758181	2	4	518	1	0	0	0	0	0	0	0	1	2743	767	27	1		1	CBX2	17	77758181	Silent	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09	40683286	77758181	3437029	28	46609										
CBX8	0	genome.wustl.edu	37	chr17	77768660	77768660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	ggtacaggccccccccagagCtgggggggcctgagccatgt	16	14	0	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77768660	77768660	C	T	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.944	p.S315N	0.060	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	27	0	0	13	14	51.85	-	-	-	T	77768660	C	T	77768660	3	4	518	1	0	0	0	0	1	0	0	0	2749	796	28	4	204	4	CBX8	17	77768660	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09	10479	77768660	3426550	29	46610										
TBCD	0	genome.wustl.edu	37	chr17	80878479	80878479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tttccaaaatgccctttagaGgtgacaccgtaattggtaag	9	8	0	2			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	80878479	80878479	G	A	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.2086	p.G696S	0.984	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	234	0	0	175	67	27.69	-	-	-	A	80878479	G	A	80878479	3	1	518	1	0	0	0	0	1	0	0	0	15728	1000	35	4	2180	4	TBCD	17	80878479	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09	3109819	80878479	316731	30	46611										
PLCG1	0	genome.wustl.edu	37	chr20	39796490	39796490	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	tcccattgtgtcctgtttccAggagcctgactacggggccc	11	14	0	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	39796490	39796490	A	G	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	splice_site	c.2302-2	e20-2	1.000	-	-	-	no_errors	PLCG1	HGNC	ENSG00000124181	99	0	0	63	38	37.62	-	-	-	G	39796490	A	G	39796490	5	3	518	1	0	0	0	0	0	0	1	0	12109	202	7	5	2378	5	PLCG1	20	39796490	Splice_Site	SNP	A	TCGA-BH-A0DH-01A-11D-A099-09		39796490	23229030	31	46612										
STAU1	0	genome.wustl.edu	37	chr20	47736592	47736592	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	aaccaaggatctccagcatgTtctcggctgcattgcgcttg	10	12	2	0			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	47736592	47736592	T	G	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.1040	p.N347T	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	73	0	0	54	19	25.68	-	-	-	G	47736592	T	G	47736592	3	3	518	1	0	0	0	0	1	0	0	0	15363	1725	60	5	717	5	STAU1	20	47736592	Missense_Mutation	SNP	T	TCGA-BH-A0DH-01A-11D-A099-09	7940102	47736592	15288928	32	46613										
PLXNB2	0	genome.wustl.edu	37	chr22	50720382	50720382	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	aaggccccggcctctgttctGagcagggcacggtgcccgtc	14	15	2	1			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	22	50720382	50720382	G	A	SNP	PLXNB2	ENST00000427829	human	ensembl	69_37n	-1	putative	missense	c.299	p.S100L	0.270	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	PLXNB2	HGNC	ENSG00000196576	40	0	0	17	13	41.94	-	-	-	A	50720382	G	A	50720382	3	1	518	1	0	0	0	0	1	0	0	0	12198	1277	45	2	2342	2	PLXNB2	22	50720382	Missense_Mutation	SNP	G	TCGA-BH-A0DH-01A-11D-A099-09		50720382	584184	33	46614										
MAGEC1	0	genome.wustl.edu	37	chrX	140995480	140995480	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	agagtttccctgagagtcctCagagtcctcctgaggggcct	12	12	1	4			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	140995480	140995480	C	G	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.2290	p.Q764E	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	115	0	0	76	30	28.3	-	-	-	G	140995480	C	G	140995480	3	3	518	1	0	0	0	0	1	0	0	0	9251	827	29	2	2296	2	MAGEC1	23	140995480	Missense_Mutation	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09		140995480	14275080	34	46615										
GPR50	0	genome.wustl.edu	37	chrX	150349192	150349192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	6	0.117206104672024	2.44553243574051	3.87209302325581	2.27770177838577	0.102564102564103	0.5224358974359	0	gatgctgcagctggccacccCgaccgtgcctctggccaccc	11	19	1	0			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	150349192	150349192	C	T	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	1	known	silent	c.1137	p.P379	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	114	0	0	90	47	34.31	-	-	-	T	150349192	C	T	150349192	2	4	518	1	0	0	0	0	0	0	0	1	6747	639	23	1		1	GPR50	23	150349192	Silent	SNP	C	TCGA-BH-A0DH-01A-11D-A099-09	9353712	150349192	4921368	35	46616										
INPP5B	0	genome.wustl.edu	37	chr1	38354001	38354001	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gactgcccatttacattgtaTgttcccgcaaaaaacctgtc	6	12	0	0			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	1	38354001	38354001	T	C	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	silent	c.1053	p.T351	0.685	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	119	0	0	93	17	15.45	-	-	-	C	38354001	T	C	38354001	2	2	519	1	0	0	0	0	0	0	0	1	7809	1451	51	5		5	INPP5B	1	38354001	Silent	SNP	T	TCGA-BH-A0DI-01A-21D-A12Q-09		38354001	210896620	1	46617										
GPSM2	0	genome.wustl.edu	37	chr1	109440722	109440722	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	aggcagccgtggatttttatGagtgagtaggggctgatatg	16	4	0	3			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	1	109440722	109440722	G	T	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	nonsense	c.556	p.E186*	1.000	smart_TPR_repeat	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	167	0	0	142	21	12.88	-	-	-	T	109440722	G	T	109440722	4	4	519	1	0	0	0	0	0	1	0	0	6786	1304	45	2	570	2	GPSM2	1	109440722	Nonsense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	71086721	109440722	139809899	2	46618										
HMCN1	0	genome.wustl.edu	37	chr1	186024579	186024579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	tactgaaattattgtgacccGagggaagagtatctccttgg	11	7	1	3			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	1	186024579	186024579	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.6917	p.R2306P	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	108	0	0	85	11	11.46	-	-	-	C	186024579	G	C	186024579	3	2	519	1	0	0	0	0	1	0	0	0	7271	1058	37	3	7095	3	HMCN1	1	186024579	Missense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	76583857	186024579	63226042	3	46619										
P2RY13	0	genome.wustl.edu	37	chr3	151047297	151047297	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ggatactcagttctctctgtCttcttatggcggcagtcatt	9	10	6	0			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	3	151047297	151047297	C	G	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	missense	c.20	p.R7T	0.285	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	385	0	0	275	51	15.64	-	-	-	G	151047297	C	G	151047297	3	3	519	1	0	0	0	0	1	0	0	0	11423	913	32	2	1052	2	P2RY13	3	151047297	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		151047297	46975133	4	46620										
PDCL2	0	genome.wustl.edu	37	chr4	56428697	56428697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gtgttgaatacagctattcaCgatggctttaacaaatttag	8	6	1	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	4	56428697	56428697	C	T	SNP	PDCL2	ENST00000295645	human	ensembl	69_37n	-1	known	missense	c.445	p.V149M	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	-	no_errors	PDCL2	HGNC	ENSG00000163440	189	0	0	124	23	15.65	-	-	-	T	56428697	C	T	56428697	3	4	519	1	0	0	0	0	1	0	0	0	11700	536	19	1	288	1	PDCL2	4	56428697	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		56428697	134725579	5	46621										
EGF	0	genome.wustl.edu	37	chr4	110882135	110882135	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gttctgcttcctgatgggaaAcgatgtcatcgtaagttata	10	7	2	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	4	110882135	110882135	A	G	SNP	EGF	ENST00000265171	human	ensembl	69_37n	1	known	silent	c.1179	p.K393	1.000	pirsf_Pro-epidermal_GF,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	581	0	0	469	94	16.64	-	-	-	G	110882135	A	G	110882135	2	3	519	1	0	0	0	0	0	0	0	1	4997	40	2	5		5	EGF	4	110882135	Silent	SNP	A	TCGA-BH-A0DI-01A-21D-A12Q-09	54453438	110882135	80272141	6	46622										
SLC6A3	0	genome.wustl.edu	37	chr5	1414821	1414821	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ctcaccgtccttggccacgtCcccgatgggcacactgtgct	10	17	1	0			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	5	1414821	1414821	C	A	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	missense	c.1141	p.D381Y	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	52	0	0	34	7	17.07	-	-	-	A	1414821	C	A	1414821	3	1	519	1	0	0	0	0	1	0	0	0	14774	855	30	2	753	2	SLC6A3	5	1414821	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		1414821	179500439	7	46623										
CDK7	0	genome.wustl.edu	37	chr5	68565064	68565064	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	tgccaggagattcagaccttGatcagctaacaagaatattt	8	8	2	4			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	5	68565064	68565064	G	C	SNP	CDK7	ENST00000256443	human	ensembl	69_37n	1	known	missense	c.658	p.D220H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK7	HGNC	ENSG00000134058	301	0	0	250	31	11.03	-	-	-	C	68565064	G	C	68565064	3	2	519	1	0	0	0	0	1	0	0	0	3178	1290	45	2	692	2	CDK7	5	68565064	Missense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	67150243	68565064	112350196	8	46624										
ANXA6	0	genome.wustl.edu	37	chr5	150483207	150483207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	tgagcaggtcaatctcactgCgggataccatgatcctggtc	11	11	2	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	5	150483207	150483207	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	69_37n	-1	known	missense	c.1886	p.R629H	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043	140	0	0	117	22	15.83	-	-	-	T	150483207	C	T	150483207	3	4	519	1	0	0	0	0	1	0	0	0	721	768	27	1	143	1	ANXA6	5	150483207	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09	81918143	150483207	30432053	9	46625										
HMMR	0	genome.wustl.edu	37	chr5	162910044	162910044	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	aggatgcttctagatctgcaGaccaagtcagcactaaagga	10	9	3	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	5	162910044	162910044	G	A	SNP	HMMR	ENST00000393915	human	ensembl	69_37n	1	known	silent	c.1551	p.Q517	0.988	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571	41	0	0	38	12	24	-	-	-	A	162910044	G	A	162910044	2	1	519	1	0	0	0	0	0	0	0	1	7293	933	33	2		2	HMMR	5	162910044	Silent	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	12426837	162910044	18005216	10	46626										
PHTF2	0	genome.wustl.edu	37	chr7	77569914	77569914	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ctcgaaaatctgaggttcctCatttccggttgaagaaagta	9	8	2	3			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	7	77569914	77569914	C	T	SNP	PHTF2	ENST00000248550	human	ensembl	69_37n	1	known	missense	c.1810	p.H604Y	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576	373	0	0	259	39	13.09	-	-	-	T	77569914	C	T	77569914	3	4	519	1	0	0	0	0	1	0	0	0	11937	826	29	2	1812	2	PHTF2	7	77569914	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		77569914	81568749	11	46627										
ANKS6	0	genome.wustl.edu	37	chr9	101546367	101546367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ctgctagcatcagtggcgtcGccccgtccccattgaccaag	10	16	1	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	9	101546367	101546367	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	missense	c.980	p.A327V	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	98	0	0	54	14	20.29	-	-	-	A	101546367	G	A	101546367	3	1	519	1	0	0	0	0	1	0	0	0	691	1087	38	1	1683	1	ANKS6	9	101546367	Missense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09		101546367	39667064	12	46628										
ZNF483	0	genome.wustl.edu	37	chr9	114305275	114305275	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gcaccaccgaattcatacagGagagaaaccctatgagtgta	9	10	1	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	9	114305275	114305275	G	C	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	missense	c.2060	p.G687A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	159	1	0.62	122	23	15.86	-	-	-	C	114305275	G	C	114305275	3	2	519	1	0	0	0	0	1	0	0	0	18032	1174	41	2	2078	2	ZNF483	9	114305275	Missense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	12758908	114305275	26908156	13	46629										
PDCD11	0	genome.wustl.edu	37	chr10	105181309	105181309	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	agctgcagggcgtgcgcagcCttatgagcaaccgaggtggg	17	10	0	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	10	105181309	105181309	C	G	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.2482	p.L828V	1.000	superfamily_NA-bd_OB-fold-like	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	43	0	0	32	12	27.27	-	-	-	G	105181309	C	G	105181309	3	3	519	1	0	0	0	0	1	0	0	0	11690	681	24	4	2544	4	PDCD11	10	105181309	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		105181309	30353438	14	46630										
CCDC147	0	genome.wustl.edu	37	chr10	106166473	106166473	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gaccccaatgcatatgagctGatacagaaaattcacaccct	6	12	1	3			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	10	106166473	106166473	G	T	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	silent	c.2178	p.L726	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	169	1	0.59	121	25	17.01	-	-	-	T	106166473	G	T	106166473	2	4	519	1	0	0	0	0	0	0	0	1	2806	1277	45	2		2	CCDC147	10	106166473	Silent	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	985164	106166473	29368274	15	46631										
OR8K1	0	genome.wustl.edu	37	chr11	56114328	56114328	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	acttgcaacccaagtccagtCatactttggctattgataaa	6	10	1	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	11	56114328	56114328	C	T	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.814	p.H272Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	183	0	0	180	106	36.93	-	-	-	T	56114328	C	T	56114328	3	4	519	1	0	0	0	0	1	0	0	0	11316	826	29	2	816	2	OR8K1	11	56114328	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		56114328	78892188	16	46632										
FGF3	0	genome.wustl.edu	37	chr11	69625120	69625120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gcccagtctcgaagcctgaaCgtgagagggctccaggttat	13	11	1	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	11	69625120	69625120	C	T	SNP	FGF3	ENST00000334134	human	ensembl	69_37n	-1	known	missense	c.673	p.V225I	0.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF3	HGNC	ENSG00000186895	9	0	0	3	28	90.32	-	-	-	T	69625120	C	T	69625120	3	4	519	1	0	0	0	0	1	0	0	0	5899	536	19	1	50	1	FGF3	11	69625120	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09	13510792	69625120	65381396	17	46633										
PRMT8	0	genome.wustl.edu	37	chr12	3702343	3702343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	tatctaatgactacaaaatgCgttagcacacgtgggaagct	9	8	1	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	12	3702343	3702343	C	T	SNP	PRMT8	ENST00000382622	human	ensembl	69_37n	1	known	missense	c.1180	p.R394C	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218	145	0	0	129	17	11.49	-	-	-	T	3702343	C	T	3702343	3	4	519	1	0	0	0	0	1	0	0	0	12623	768	27	1	1218	1	PRMT8	12	3702343	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		3702343	130149552	18	46634										
FGD4	0	genome.wustl.edu	37	chr12	32791747	32791747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	caggtatctaaaccacatctGtctgaagggacagatgccct	9	11	3	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	12	32791747	32791747	G	A	SNP	FGD4	ENST00000266482	human	ensembl	69_37n	1	known	silent	c.1317	p.L439	0.000	NULL	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	227	0	0	168	34	16.83	-	-	-	A	32791747	G	A	32791747	2	1	519	1	0	0	0	0	0	0	0	1	5881	1392	48	4		4	FGD4	12	32791747	Silent	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09	29089404	32791747	101060148	19	46635										
CNTN1	0	genome.wustl.edu	37	chr12	41337803	41337803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ttaaaaatatatagatcctaCgcgaattatattggccccaa	5	8	0	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	12	41337803	41337803	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.1514	p.T505M	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	217	0	0	157	24	13.26	-	-	-	T	41337803	C	T	41337803	3	4	519	1	0	0	0	0	1	0	0	0	3670	536	19	1	1564	1	CNTN1	12	41337803	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09	8546056	41337803	92514092	20	46636										
GALNTL1	0	genome.wustl.edu	37	chr14	69813893	69813893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ctgccaagaacccgcagcccGcccaggtaaggacctcgggt	12	16	0	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	14	69813893	69813893	G	A	SNP	GALNTL1	ENST00000337827	human	ensembl	69_37n	1	known	missense	c.1408	p.A470T	0.007	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL1	HGNC	ENSG00000100626	51	0	0	40	11	21.57	-	-	-	A	69813893	G	A	69813893	3	1	519	1	0	0	0	0	1	0	0	0	6271	1087	38	1	1458	1	GALNTL1	14	69813893	Missense_Mutation	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09		69813893	37535647	21	46637										
CDH8	0	genome.wustl.edu	37	chr16	61687928	61687928	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	atcgtagcgaatgatgttttCtcgaacgtcttcatcatctt	7	9	5	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	16	61687928	61687928	C	T	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662K	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	74	0	0	69	17	19.54	-	-	-	T	61687928	C	T	61687928	3	4	519	1	0	0	0	0	1	0	0	0	3145	922	32	2	419	2	CDH8	16	61687928	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		61687928	28666825	22	46638										
TP53	0	genome.wustl.edu	37	chr17	7577517	7577517	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	acctggagtcttccagtgtgAtgatggtgaggatgggcctc	15	8	1	3			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	17	7577517	7577517	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.764	p.I255N	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	118	0	0	71	20	21.74	-	-	-	T	7577517	A	T	7577517	3	4	519	1	0	0	0	0	1	0	0	0	16477	333	12	5	526	5	TP53	17	7577517	Missense_Mutation	SNP	A	TCGA-BH-A0DI-01A-21D-A12Q-09		7577517	73617693	23	46639										
MYO19	0	genome.wustl.edu	37	chr17	34863744	34863744	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	ttgtcaggaaatgattcaaaTccatacacatccagcaggcc	7	11	2	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	17	34863744	34863744	T	C	SNP	MYO19	ENST00000431794	human	ensembl	69_37n	-1	known	silent	c.1251	p.G417	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO19	HGNC	ENSG00000141140	128	0	0	109	33	23.24	-	-	-	C	34863744	T	C	34863744	2	2	519	1	0	0	0	0	0	0	0	1	10139	1422	50	5		5	MYO19	17	34863744	Silent	SNP	T	TCGA-BH-A0DI-01A-21D-A12Q-09	27286227	34863744	46331466	24	46640										
LDLR	0	genome.wustl.edu	37	chr19	11221353	11221353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	aacgaatgcttggacaacaaCggcggctgttcccacgtctg	11	12	1	0			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	19	11221353	11221353	C	T	SNP	LDLR	ENST00000252444	human	ensembl	69_37n	1	putative	missense	c.1220	p.T407M	0.266	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LDLR	HGNC	ENSG00000130164	68	0	0	39	7	15.22	-	-	-	T	11221353	C	T	11221353	3	4	519	1	0	0	0	0	1	0	0	0	8758	535	19	1	992	1	LDLR	19	11221353	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		11221353	47907630	25	46641										
ZNF93	0	genome.wustl.edu	37	chr19	20045077	20045077	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	caaagcctttgttgcatcctCaacccttagtaaacatgaga	6	11	1	1			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	19	20045077	20045077	C	G	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	nonsense	c.1313	p.S438*	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	121	0	0	110	20	15.38	-	-	-	G	20045077	C	G	20045077	4	3	519	1	0	0	0	0	0	1	0	0	18295	838	29	2	1327	2	ZNF93	19	20045077	Nonsense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09	8823724	20045077	39083906	26	46642										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41811663	41811663	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	gcctccacctccaccaccacCtgcctacaactatgggagct	6	19	0	0			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	19	41811663	41811663	C	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.2345	p.P782H	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	172	0	0	132	31	19.02	-	-	-	A	41811663	C	A	41811663	3	1	519	1	0	0	0	0	1	0	0	0	7325	681	24	4	2399	4	HNRNPUL1	19	41811663	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09	21766586	41811663	17317320	27	46643										
PIK3IP1	0	genome.wustl.edu	37	chr22	31685334	31685334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	agcccaagatgatgccagctCcgatggcaatgatgatcacc	10	12	1	4			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	22	31685334	31685334	C	T	SNP	PIK3IP1	ENST00000215912	human	ensembl	69_37n	-1	known	missense	c.554	p.G185E	1.000	NULL	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	-	no_errors	PIK3IP1	HGNC	ENSG00000100100	66	0	0	34	9	20.93	-	-	-	T	31685334	C	T	31685334	3	4	519	1	0	0	0	0	1	0	0	0	11991	855	30	2	245	2	PIK3IP1	22	31685334	Missense_Mutation	SNP	C	TCGA-BH-A0DI-01A-21D-A12Q-09		31685334	19619232	28	46644										
TRO	0	genome.wustl.edu	37	chrX	54950989	54950989	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.241379310344828	7	0.0947123909223371	2.34418604651163	3.34883720930233	1.91362126245847	1	1	0	tggccattttacaagaaaggGtaagaatccaatgctgtcca	9	8	0	2			TCGA-BH-A0DI-01A-21D-A12Q-09	TCGA-BH-A0DI-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3777748c-5614-4826-8cde-eb7ecefb8101	505bcff2-103a-4183-80cd-203ae6a5a31c	X	54950989	54950989	G	T	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	splice_site	c.1341+1	e3+1	0.998	-	-	-	no_errors	TRO	HGNC	ENSG00000067445	261	0	0	170	28	14.14	-	-	-	T	54950989	G	T	54950989	5	4	519	1	0	0	0	0	0	0	1	0	16670	1275	44	4	1352	4	TRO	23	54950989	Splice_Site	SNP	G	TCGA-BH-A0DI-01A-21D-A12Q-09		54950989	100319571	29	46645										
SPATA21	0	genome.wustl.edu	37	chr1	16735620	16735620	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tccctgccctcaccttcctcTtgcttcagggtcagttgctc	7	17	4	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	16735620	16735620	T	C	SNP	SPATA21	ENST00000335496	human	ensembl	69_37n	-1	known	silent	c.666	p.Q222	0.951	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SPATA21	HGNC	ENSG00000187144	73	0	0	46	19	29.23	-	-	-	C	16735620	T	C	16735620	2	2	520	1	0	0	0	0	0	0	0	1	15098	1606	56	5		5	SPATA21	1	16735620	Silent	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09		16735620	232515001	1	46646										
DOCK7	0	genome.wustl.edu	37	chr1	63005436	63005436	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tcattaccttctgaaatcgtGaaactatatcactagcaatc	4	10	3	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	63005436	63005436	G	T	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	nonsense	c.3173	p.S1058*	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	170	0	0	132	50	27.32	-	-	-	T	63005436	G	T	63005436	4	4	520	1	0	0	0	0	0	1	0	0	4727	1294	45	2	3349	2	DOCK7	1	63005436	Nonsense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	46269816	63005436	186245185	2	46647										
PKN2	0	genome.wustl.edu	37	chr1	89298781	89298781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tgttaagaagaaatcctgaaCggcgccttggggctagcgag	14	8	0	3			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	89298781	89298781	C	T	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	missense	c.2692	p.R898W	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	40	0	0	62	21	25.3	-	-	-	T	89298781	C	T	89298781	3	4	520	1	0	0	0	0	1	0	0	0	12054	527	19	1	2774	1	PKN2	1	89298781	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	26293345	89298781	159951840	3	46648										
TMEM167B	0	genome.wustl.edu	37	chr1	109637064	109637064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtgattggaaccaggctgcaTgctgctgtggcaattgcttg	14	8	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	109637064	109637064	T	G	SNP	TMEM167B	ENST00000338272	human	ensembl	69_37n	1	known	missense	c.168	p.H56Q	1.000	NULL	pfam_DUF1242	-	no_errors	TMEM167B	HGNC	ENSG00000215717	127	1	0.78	105	24	18.6	-	-	-	G	109637064	T	G	109637064	3	3	520	1	0	0	0	0	1	0	0	0	16177	1461	51	5	178	5	TMEM167B	1	109637064	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	20338283	109637064	139613557	4	46649										
OLFML3	0	genome.wustl.edu	37	chr1	114523891	114523891	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agatggagaacactttgcagCtaatcaaattccacctggca	8	10	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	114523891	114523891	C	G	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	missense	c.721	p.L241V	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	160	0	0	128	41	24.26	-	-	-	G	114523891	C	G	114523891	3	3	520	1	0	0	0	0	1	0	0	0	10932	796	28	4	731	4	OLFML3	1	114523891	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	4886827	114523891	134726730	5	46650										
ILF2	0	genome.wustl.edu	37	chr1	153635021	153635021	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tccatcccaggtagatatttCagaagcaagatctaggaaag	9	8	2	3			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	153635021	153635021	C	A	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.E342*	1.000	NULL	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	360	0	0	199	40	16.74	-	-	-	A	153635021	C	A	153635021	4	1	520	1	0	0	0	0	0	1	0	0	7765	835	29	2	152	2	ILF2	1	153635021	Nonsense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	39111130	153635021	95615600	6	46651										
DCST1	0	genome.wustl.edu	37	chr1	155014231	155014231	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tcagctgccgtcgttggtttGaccgcaagcatgaacagtgc	12	11	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	155014231	155014231	G	T	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	missense	c.790	p.D264Y	0.591	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	98	0	0	62	18	22.5	-	-	-	T	155014231	G	T	155014231	3	4	520	1	0	0	0	0	1	0	0	0	4333	1290	45	2	816	2	DCST1	1	155014231	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	1379210	155014231	94236390	7	46652										
TNR	0	genome.wustl.edu	37	chr1	175334374	175334374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agtgatgttcacactggaggAggtcacatgagaaaagtgca	13	6	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	175334374	175334374	A	G	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.2359	p.S787P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	97	0	0	80	16	16.67	-	-	-	G	175334374	A	G	175334374	3	3	520	1	0	0	0	0	1	0	0	0	16433	304	11	5	1765	5	TNR	1	175334374	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	20320143	175334374	73916247	8	46653										
SLC26A9	0	genome.wustl.edu	37	chr1	205897041	205897041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cagagctacctggttcgaatCcacgtcgtagccgtgcttgt	11	12	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	205897041	205897041	C	G	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.1090	p.D364H	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	57	0	0	92	13	12.38	-	-	-	G	205897041	C	G	205897041	3	3	520	1	0	0	0	0	1	0	0	0	14613	855	30	2	1633	2	SLC26A9	1	205897041	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	30562667	205897041	43353580	9	46654										
NSL1	0	genome.wustl.edu	37	chr1	212911824	212911824	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gcagtctttagtttgctttcTtttcagtaccatgtcagagg	9	8	4	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	212911824	212911824	T	C	SNP	NSL1	ENST00000366977	human	ensembl	69_37n	-1	known	missense	c.772	p.R258G	0.990	NULL	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697	138	0	0	190	135	41.54	-	-	-	C	212911824	T	C	212911824	3	2	520	1	0	0	0	0	1	0	0	0	10746	1617	56	5	77	5	NSL1	1	212911824	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	7014783	212911824	36338797	10	46655										
HLX	0	genome.wustl.edu	37	chr1	221055680	221055680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ggcggcgatgctgggcctcaCggacgcacaggtaaggcagt	17	11	1	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	221055680	221055680	C	T	SNP	HLX	ENST00000366903	human	ensembl	69_37n	1	known	missense	c.947	p.T316M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630	27	0	0	35	6	14.63	-	-	-	T	221055680	C	T	221055680	3	4	520	1	0	0	0	0	1	0	0	0	7267	536	19	1	957	1	HLX	1	221055680	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	8143856	221055680	28194941	11	46656										
PSEN2	0	genome.wustl.edu	37	chr1	227076718	227076718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtacctcccagagtggtccgCgtgggtcatcctgggcgcca	14	14	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	1	227076718	227076718	C	T	SNP	PSEN2	ENST00000391872	human	ensembl	69_37n	1	known	missense	c.854	p.A285V	1.000	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Peptidase_A22A	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	67	0	0	19	21	52.5	-	-	-	T	227076718	C	T	227076718	3	4	520	1	0	0	0	0	1	0	0	0	12731	768	27	1	773	1	PSEN2	1	227076718	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	6021038	227076718	22173903	12	46657										
ATAD2B	0	genome.wustl.edu	37	chr2	24011446	24011446	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	atcaattcttgaaaaaatttTcttctgtcttcttcaatagg	4	7	7	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	24011446	24011446	T	C	SNP	ATAD2B	ENST00000381024	human	ensembl	69_37n	-1	novel	missense	c.554	p.E185G	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATAD2B	HGNC	ENSG00000119778	146	0	0	149	60	28.57	-	-	-	C	24011446	T	C	24011446	3	2	520	1	0	0	0	0	1	0	0	0	1076	1780	62	5	1700	5	ATAD2B	2	24011446	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09		24011446	219187927	13	46658										
CTNNA2	0	genome.wustl.edu	37	chr2	80540719	80540719	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agaaggccactccagtcagtAggcaaagtctgtgaaaaaaa	10	8	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	80540719	80540719	A	G	SNP	CTNNA2	ENST00000343114	human	ensembl	69_37n	1	putative	silent	c.33	p.V11	0.010	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	97	0	0	45	18	28.57	-	-	-	G	80540719	A	G	80540719	2	3	520	1	0	0	0	0	0	0	0	1	4045	435	15	5		5	CTNNA2	2	80540719	Silent	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	56529273	80540719	162658654	14	46659										
LONRF2	0	genome.wustl.edu	37	chr2	100903408	100903408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ttctctgtctggcattacccCaaaatgacttaaaatttgtt	5	9	2	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	100903408	100903408	C	A	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	missense	c.2038	p.G680W	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	380	1	0.26	187	61	24.6	-	-	-	A	100903408	C	A	100903408	3	1	520	1	0	0	0	0	1	0	0	0	8961	594	21	4	234	4	LONRF2	2	100903408	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	20362689	100903408	142295965	15	46660										
EPB41L5	0	genome.wustl.edu	37	chr2	120918514	120918514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gagtctcttgagactctgatGcttatcacacctgccgacag	9	12	3	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	120918514	120918514	G	T	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	missense	c.1851	p.M617I	0.000	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	224	1	0.44	283	56	16.52	-	-	-	T	120918514	G	T	120918514	3	4	520	1	0	0	0	0	1	0	0	0	5194	1319	46	4	2114	4	EPB41L5	2	120918514	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	20015106	120918514	122280859	16	46661										
COBLL1	0	genome.wustl.edu	37	chr2	165550903	165550903	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtgactcggtgcgctctttaCtgaaagactgtgaccttttc	10	10	1	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	165550903	165550903	C	A	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.3314	p.S1105I	1.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	157	1	0.63	113	36	24.16	-	-	-	A	165550903	C	A	165550903	3	1	520	1	0	0	0	0	1	0	0	0	3684	565	20	4	399	4	COBLL1	2	165550903	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	44632389	165550903	77648470	17	46662										
LRP2	0	genome.wustl.edu	37	chr2	170022539	170022539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ttgttgtcacaccggaaacgGtttggtgaattacagggaac	12	7	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	170022539	170022539	G	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.11661	p.N3887K	0.017	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	337	2	0.59	314	97	23.54	-	-	-	T	170022539	G	T	170022539	3	4	520	1	0	0	0	0	1	0	0	0	9022	1252	44	4	2378	4	LRP2	2	170022539	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	4471636	170022539	73176834	18	46663										
CYP20A1	0	genome.wustl.edu	37	chr2	204154590	204154590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aaaattgaccgatttattatTcctagagaggtagaaaacct	7	6	0	3			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	204154590	204154590	T	C	SNP	CYP20A1	ENST00000356079	human	ensembl	69_37n	1	known	silent	c.1074	p.I358	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004	72	0	0	84	34	28.57	-	-	-	C	204154590	T	C	204154590	2	2	520	1	0	0	0	0	0	0	0	1	4183	1771	62	5		5	CYP20A1	2	204154590	Silent	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	34132051	204154590	39044783	19	46664										
NRP2	0	genome.wustl.edu	37	chr2	206617652	206617652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tgaccatgccaagtggctccGgaccacctgggccagcagct	12	15	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	206617652	206617652	G	A	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.1997	p.R666Q	0.002	pirsf_Neuropilin,pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	77	0	0	47	19	27.94	-	-	-	A	206617652	G	A	206617652	3	1	520	1	0	0	0	0	1	0	0	0	10734	1116	39	1	2070	1	NRP2	2	206617652	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	2463062	206617652	36581721	20	46665										
SPHKAP	0	genome.wustl.edu	37	chr2	228881884	228881884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtctgtggcacactggggatCgcagagaaggagacagcagg	17	8	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	2	228881884	228881884	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.3686	p.R1229Q	0.953	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	128	0	0	83	26	23.85	-	-	-	T	228881884	C	T	228881884	3	4	520	1	0	0	0	0	1	0	0	0	15139	884	31	1	1440	1	SPHKAP	2	228881884	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	22264232	228881884	14317489	21	46666										
CBLB	0	genome.wustl.edu	37	chr3	105452983	105452983	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cacaatataattcatattgtTcctggaatttggggaggagg	11	5	1	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	3	105452983	105452983	T	C	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.1073	p.E358G	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	105	0	0	106	26	19.55	-	-	-	C	105452983	T	C	105452983	3	2	520	1	0	0	0	0	1	0	0	0	2726	1797	62	5	1919	5	CBLB	3	105452983	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09		105452983	92569447	22	46667										
KIAA1524	0	genome.wustl.edu	37	chr3	108287044	108287044	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ggcaatcctttcacatttttTtcttgttaaagcctcatcta	4	10	4	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	3	108287044	108287044	T	A	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	nonsense	c.1231	p.K411*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	134	0	0	153	54	25.96	-	-	-	A	108287044	T	A	108287044	4	1	520	1	0	0	0	0	0	1	0	0	8291	1850	64	5	1534	5	KIAA1524	3	108287044	Nonsense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	2834061	108287044	89735386	23	46668										
P2RY1	0	genome.wustl.edu	37	chr3	152554217	152554217	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agtacctgcgaagttatttcAtctacagcatgtgcacgacc	8	11	2	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	3	152554217	152554217	A	T	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	missense	c.646	p.I216F	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	112	0	0	73	33	31.13	-	-	-	T	152554217	A	T	152554217	3	4	520	1	0	0	0	0	1	0	0	0	11419	217	8	5	648	5	P2RY1	3	152554217	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	44267173	152554217	45468213	24	46669										
PIK3CA	0	genome.wustl.edu	37	chr3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctttgttttttaaggaacacTgtccattggcatggggaaat	10	6	0	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	3	178927980	178927980	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1258	p.C420R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	89	0	0	100	67	39.88	-	-	-	C	178927980	T	C	178927980	3	2	520	1	0	0	0	0	1	0	0	0	11987	1580	55	5	1284	5	PIK3CA	3	178927980	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	26373763	178927980	19094450	25	46670										
PI4K2B	0	genome.wustl.edu	37	chr4	25258269	25258269	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtgccaaaagtgggtagaaaGtttcataggataggactccc	12	7	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	4	25258269	25258269	G	C	SNP	PI4K2B	ENST00000264864	human	ensembl	69_37n	1	known	missense	c.729	p.K243N	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210	111	0	0	123	54	30.51	-	-	-	C	25258269	G	C	25258269	3	2	520	1	0	0	0	0	1	0	0	0	11946	1020	36	4	743	4	PI4K2B	4	25258269	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		25258269	165896007	26	46671										
ODAM	0	genome.wustl.edu	37	chr4	71062264	71062264	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agatatatcatacgaaaatgAaaattataattcttcttgga	5	4	3	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	4	71062264	71062264	A	G	SNP	ODAM	ENST00000396094	human	ensembl	69_37n	1	known	missense	c.4	p.K2E	0.909	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205	61	0	0	96	26	21.31	-	-	-	G	71062264	A	G	71062264	3	3	520	1	0	0	0	0	1	0	0	0	10897	247	9	5	6	5	ODAM	4	71062264	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	45803995	71062264	120092012	27	46672										
FHDC1	0	genome.wustl.edu	37	chr4	153893569	153893570	+	Frame_Shift_Del	DEL	AA	AA	-													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ggaactggaatgctggaaacAagagctccaggatgaggcct							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	4	153893569	153893570	AA	-	DEL	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	frame_shift_del	c.1259_1260	p.Q420fs	0.105:0.098	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	82	0	0	75	15	16.67	-	-	-	-	153893570	AA	-	153893569	7	5	520	1	0	1	0	1	0	0	0	0	5922	130	5	0	1297	0	FHDC1	4	153893569	Frame_Shift_Del	DEL	AA	TCGA-BH-A0DK-01A-21W-A071-09	82831305	153893569	37260707	28	46673										
CEP72	0	genome.wustl.edu	37	chr5	620293	620293	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aaccgagctcgtggatgtggActtccggctgaaccccgtgg	14	12	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	620293	620293	A	G	SNP	CEP72	ENST00000264935	human	ensembl	69_37n	1	known	missense	c.320	p.D107G	1.000	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877	73	0	0	54	15	21.74	-	-	-	G	620293	A	G	620293	3	3	520	1	0	0	0	0	1	0	0	0	3289	275	10	5	330	5	CEP72	5	620293	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09		620293	180294967	29	46674										
HEATR7B2	0	genome.wustl.edu	37	chr5	41058279	41058279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agcagcaagctcaccgtgggCccgtgggccttaacgatgct	13	13	1	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	41058279	41058279	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.642	p.G214	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	65	0	0	68	20	22.73	-	-	-	T	41058279	C	T	41058279	2	4	520	1	0	0	0	0	0	0	0	1	7086	726	26	4		4	HEATR7B2	5	41058279	Silent	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	40437986	41058279	139856981	30	46675										
AP3B1	0	genome.wustl.edu	37	chr5	77423976	77423976	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	taaggtgccaagctggaaatGatctctatctattaaaaata	7	6	2	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	77423976	77423976	G	A	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.1846	p.H616Y	1.000	superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	79	0	0	135	44	24.58	-	-	-	A	77423976	G	A	77423976	3	1	520	1	0	0	0	0	1	0	0	0	745	1290	45	2	1482	2	AP3B1	5	77423976	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	36365697	77423976	103491284	31	46676										
ZFYVE16	0	genome.wustl.edu	37	chr5	79734566	79734566	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cagataccgttgttccaatcActtgtgctatagattctaca	6	10	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	79734566	79734566	A	C	SNP	ZFYVE16	ENST00000338008	human	ensembl	69_37n	1	known	missense	c.2062	p.T688P	0.000	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319	213	0	0	225	73	24.5	-	-	-	C	79734566	A	C	79734566	3	2	520	1	0	0	0	0	1	0	0	0	17760	159	6	5	2068	5	ZFYVE16	5	79734566	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	2310590	79734566	101180694	32	46677										
LIX1	0	genome.wustl.edu	37	chr5	96430596	96430596	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agttcttgtcctgctttcctGgcttcctccaactgcctcag	7	15	2	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	96430596	96430596	G	T	SNP	LIX1	ENST00000274382	human	ensembl	69_37n	-1	known	silent	c.705	p.A235	1.000	NULL	NULL	-	no_errors	LIX1	HGNC	ENSG00000145721	168	0	0	192	73	27.44	-	-	-	T	96430596	G	T	96430596	2	4	520	1	0	0	0	0	0	0	0	1	8887	1335	47	4		4	LIX1	5	96430596	Silent	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	16696030	96430596	84484664	33	46678										
ANKHD1	0	genome.wustl.edu	37	chr5	139889608	139889608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tatgccttgtttacaggggaGcccacattgatgttcgtaac	10	9	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	5	139889608	139889608	G	T	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.3946	p.A1316S	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	186	0	0	163	58	26.24	-	-	-	T	139889608	G	T	139889608	3	4	520	1	0	0	0	0	1	0	0	0	628	971	34	4	4138	4	ANKHD1	5	139889608	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	43459012	139889608	41025652	34	46679										
C6orf136	0	genome.wustl.edu	37	chr6	30617375	30617375	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tctaccattcccacccctttGgccccactccacgacaacca	3	21	1	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	6	30617375	30617375	G	A	SNP	C6orf136	ENST00000293604	human	ensembl	69_37n	1	known	nonsense	c.656	p.W219*	0.993	NULL	pfam_DUF2358	-	no_errors	C6orf136	HGNC	ENSG00000204564	311	0	0	173	36	17.22	-	-	-	A	30617375	G	A	30617375	4	1	520	1	0	0	0	0	0	1	0	0	2352	1357	47	4	662	4	C6orf136	6	30617375	Nonsense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		30617375	140497692	35	46680										
ZBTB24	0	genome.wustl.edu	37	chr6	109787472	109787472	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tgaaattgatgttatgtacaGaatcggttacgagaagctga	11	4	0	5			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	6	109787472	109787472	G	T	SNP	ZBTB24	ENST00000230122	human	ensembl	69_37n	-1	known	missense	c.1676	p.S559Y	0.997	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365	309	0	0	220	94	29.94	-	-	-	T	109787472	G	T	109787472	3	4	520	1	0	0	0	0	1	0	0	0	17627	942	33	2	421	2	ZBTB24	6	109787472	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	79170097	109787472	61327595	36	46681										
PKD1L1	0	genome.wustl.edu	37	chr7	47847972	47847972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	catagtaggtgaggctcactCcaaccacggagagctggaac	12	11	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	7	47847972	47847972	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.7700	p.G2567E	0.085	pfam_PKD1_2_channel	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	67	0	0	47	26	35.62	-	-	-	T	47847972	C	T	47847972	3	4	520	1	0	0	0	0	1	0	0	0	12038	855	30	2	873	2	PKD1L1	7	47847972	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09		47847972	111290691	37	46682										
DDC	0	genome.wustl.edu	37	chr7	50611610	50611610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	atgattatcttctcaacgtcGttgatgatgtcctcaaacgt	7	9	3	3			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	7	50611610	50611610	G	A	SNP	DDC	ENST00000430300	human	ensembl	69_37n	-1	novel	missense	c.71	p.T24M	0.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDC	HGNC	ENSG00000132437	99	0	0	64	26	28.89	-	-	-	A	50611610	G	A	50611610	3	1	520	1	0	0	0	0	1	0	0	0	4356	1136	40	1	1320	1	DDC	7	50611610	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	2763638	50611610	108527053	38	46683										
PTPN12	0	genome.wustl.edu	37	chr7	77256423	77256423	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ttgtatagctgataaaatctCtaagccacaggaattaagtt	7	6	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	7	77256423	77256423	C	G	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	missense	c.1427	p.S476C	0.000	pirsf_Tyr_Pase_non-rcpt_typ-12	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	203	0	0	202	53	20.78	-	-	-	G	77256423	C	G	77256423	3	3	520	1	0	0	0	0	1	0	0	0	12862	913	32	2	1477	2	PTPN12	7	77256423	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	26644813	77256423	81882240	39	46684										
PHTF2	0	genome.wustl.edu	37	chr7	77469618	77469619	+	Splice_Site	INS	-	-	T													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agtctggtatcaaaagaaggINStaagttgatagtcaaaactt							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	7	77469618	77469619	-	T	INS	PHTF2	ENST00000248550	human	ensembl	69_37n	1	known	splice_site_ins	c.45+1_45+1	e1+1	1.000:1.000	-	-	-	no_errors	PHTF2	HGNC	ENSG00000006576	147	0	0	263	44	14.33	-	-	-	T	77469619	-	T	77469618	8	5	520	1	0	1	1	0	0	0	1	0	11937	1275	44	0	48	0	PHTF2	7	77469618	Splice_Site	INS	-	TCGA-BH-A0DK-01A-21W-A071-09	213195	77469618	81669045	40	46685										
METTL2B	0	genome.wustl.edu	37	chr7	128119302	128119302	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ggatagacattggctttttaCcgaattccctgagctggcac	10	10	0	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	7	128119302	128119302	C	G	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	missense	c.293	p.T98S	0.991	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	136	0	0	149	23	13.37	-	-	-	G	128119302	C	G	128119302	3	3	520	1	0	0	0	0	1	0	0	0	9571	507	18	4	303	4	METTL2B	7	128119302	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	50649684	128119302	31019361	41	46686										
POP1	0	genome.wustl.edu	37	chr8	99135672	99135672	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cagaggtgtaaagcaccacaGtggaggtgaaaaacctttcc	11	9	0	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	8	99135672	99135672	G	C	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	missense	c.107	p.S36T	0.364	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	170	0	0	185	40	17.78	-	-	-	C	99135672	G	C	99135672	3	2	520	1	0	0	0	0	1	0	0	0	12325	1029	36	4	109	4	POP1	8	99135672	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		99135672	47228350	42	46687										
TATDN1	0	genome.wustl.edu	37	chr8	125528004	125528004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tacttgagttgagtatctttGggacaaaactgcagtcggtc	11	7	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	8	125528004	125528004	G	T	SNP	TATDN1	ENST00000519232	human	ensembl	69_37n	-1	putative	missense	c.460	p.Q154K	0.991	pfam_TatD_superfamily,pirsf_DNase_TatD	pfam_TatD_superfamily,pirsf_DNase_TatD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TATDN1	HGNC	ENSG00000147687	89	0	0	89	22	19.82	-	-	-	T	125528004	G	T	125528004	3	4	520	1	0	0	0	0	1	0	0	0	15683	1335	47	4	549	4	TATDN1	8	125528004	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	26392332	125528004	20836018	43	46688										
GPR107	0	genome.wustl.edu	37	chr9	132863474	132863474	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cctttctgataaagacaaaaAgatcttcatgattgtcattc	5	8	4	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	9	132863474	132863474	A	T	SNP	GPR107	ENST00000372406	human	ensembl	69_37n	1	known	missense	c.1103	p.K368M	1.000	pfam_TM_rcpt_euk,pfam_Rhodopsin-like_GPCR_TM_domain	pfam_TM_rcpt_euk,pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	GPR107	HGNC	ENSG00000148358	122	1	0.81	139	52	27.23	-	-	-	T	132863474	A	T	132863474	3	4	520	1	0	0	0	0	1	0	0	0	6673	72	3	5	1149	5	GPR107	9	132863474	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09		132863474	8349957	44	46689										
ADAMTS13	0	genome.wustl.edu	37	chr9	136323154	136323154	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctccgcacgcacggattgccAtccatgccctggccaccaac	8	19	0	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-11A-13W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	7ed0e2a4-53ff-456f-8772-e49db779b612	9	136323154	136323154	A	G	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.4015	p.I1339V	1.000	superfamily_CUB	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	8	0	0	13	5	27.78	-	-	-	G	136323154	A	G	136323154	3	3	520	1	0	0	0	0	1	0	0	0	258	217	8	5	4125	5	ADAMTS13	9	136323154	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	3459680	136323154	4890277	45	46690										
SEC16A	0	genome.wustl.edu	37	chr9	139357554	139357554	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tgttctgtggtctcgtaacaGaagctccgcaatgtcggtcc	11	11	2	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	9	139357554	139357554	G	T	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.4678	p.L1560M	0.015	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	137	0	0	57	9	13.64	-	-	-	T	139357554	G	T	139357554	3	4	520	1	0	0	0	0	1	0	0	0	14074	933	33	2	2479	2	SEC16A	9	139357554	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	3034400	139357554	1855877	46	46691										
GATA3	0	genome.wustl.edu	37	chr10	8115941	8115942	+	Frame_Shift_Ins	INS	-	-	T													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	acccgccatccagcctgtccINStttggaccacaccacccctc							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	10	8115941	8115942	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1290_1291	p.G431fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	84	0	0	108	30	21.74	-	-	-	T	8115942	-	T	8115941	7	5	520	1	0	1	1	0	0	0	0	0	6305	668	24	0	1308	0	GATA3	10	8115941	Frame_Shift_Ins	INS	-	TCGA-BH-A0DK-01A-21W-A071-09		8115941	127418806	47	46692										
SLC25A16	0	genome.wustl.edu	37	chr10	70243321	70243321	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	attccatggtgtccatagacAtacttcatagtatcccgcat	6	11	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	10	70243321	70243321	A	C	SNP	SLC25A16	ENST00000265870	human	ensembl	69_37n	-1	known	nonsense	c.867	p.Y289*	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Graves_DC,prints_Mit_carrier	-	no_errors	SLC25A16	HGNC	ENSG00000122912	143	1	0.69	118	40	25.32	-	-	-	C	70243321	A	C	70243321	4	2	520	1	0	0	0	0	0	1	0	0	14567	224	8	5	135	5	SLC25A16	10	70243321	Nonsense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	62127380	70243321	65291426	48	46693										
GRID1	0	genome.wustl.edu	37	chr10	87898775	87898775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ccagaaagctttgaagcccaCggatatctgagcagtgagag	12	9	1	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	10	87898775	87898775	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.527	p.R176H	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	133	0	0	109	32	22.7	-	-	-	T	87898775	C	T	87898775	3	4	520	1	0	0	0	0	1	0	0	0	6822	536	19	1	2554	1	GRID1	10	87898775	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	17655454	87898775	47635972	49	46694										
CALHM2	0	genome.wustl.edu	37	chr10	105209118	105209118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cagccaccactagggaagagGagcttccctttgcacagctc	10	14	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	10	105209118	105209118	G	A	SNP	CALHM2	ENST00000393235	human	ensembl	69_37n	-1	known	missense	c.581	p.S194F	0.000	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172	34	0	0	38	12	24	-	-	-	A	105209118	G	A	105209118	3	1	520	1	0	0	0	0	1	0	0	0	2608	1189	41	2		2	CALHM2	10	105209118	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	17310343	105209118	30325629	50	46695										
SLK	0	genome.wustl.edu	37	chr10	105762296	105762296	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tcagtgaaggaaaagagaatAatataatgataaccttagaa	8	3	1	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	10	105762296	105762296	A	T	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	missense	c.1360	p.N454Y	0.002	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	209	0	0	213	66	23.66	-	-	-	T	105762296	A	T	105762296	3	4	520	1	0	0	0	0	1	0	0	0	14837	362	13	5	1394	5	SLK	10	105762296	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	553178	105762296	29772451	51	46696										
MUC5B	0	genome.wustl.edu	37	chr11	1268931	1268931	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	atccgtgcggccggaggggcAgtctgtgagcagcccctggg	18	12	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-11A-13W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	7ed0e2a4-53ff-456f-8772-e49db779b612	11	1268931	1268931	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10830	p.A3610	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	9	0	0	6	4	40	-	-	-	C	1268931	A	C	1268931	2	2	520	1	0	0	0	0	0	0	0	1	10051	175	7	5		5	MUC5B	11	1268931	Silent	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09		1268931	133737585	52	46697										
OR52E4	0	genome.wustl.edu	37	chr11	5906297	5906298	+	Frame_Shift_Del	DEL	TC	TC	-													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tttacacaccagcattttttTcttttatgacacatcgtttt							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	11	5906297	5906298	TC	-	DEL	OR52E4	ENST00000316987	human	ensembl	69_37n	1	known	frame_shift_del	c.775_776	p.S259fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52E4	HGNC	ENSG00000180974	421	0	0	238	81	25.39	-	-	-	-	5906298	TC	-	5906297	7	5	520	1	0	1	0	1	0	0	0	0	11189	1783	62	0	777	0	OR52E4	11	5906297	Frame_Shift_Del	DEL	TC	TCGA-BH-A0DK-01A-21W-A071-09	4637366	5906297	129100219	53	46698										
BSCL2	0	genome.wustl.edu	37	chr11	62458135	62458135	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tccgctcaggggctgctgatCtggtttctcctcctcggaca	11	14	3	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	11	62458135	62458135	C	T	SNP	BSCL2	ENST00000360796	human	ensembl	69_37n	-1	known	missense	c.1183	p.D395N	0.019	NULL	pfam_Adipose-reg_protein_Seipin	-	no_errors	BSCL2	HGNC	ENSG00000168000	71	0	0	81	22	21.36	-	-	-	T	62458135	C	T	62458135	3	4	520	1	0	0	0	0	1	0	0	0	1535	913	32	2	213	2	BSCL2	11	62458135	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	56551838	62458135	72548381	54	46699										
BSCL2	0	genome.wustl.edu	37	chr11	62458334	62458334	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	agttgactcctcctggccttCaggccctgcacctccaaaga	8	16	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	11	62458334	62458334	C	T	SNP	BSCL2	ENST00000360796	human	ensembl	69_37n	-1	known	missense	c.1078	p.E360K	0.308	NULL	pfam_Adipose-reg_protein_Seipin	-	no_errors	BSCL2	HGNC	ENSG00000168000	108	0	0	57	18	24	-	-	-	T	62458334	C	T	62458334	3	4	520	1	0	0	0	0	1	0	0	0	1535	835	29	2	322	2	BSCL2	11	62458334	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	199	62458334	72548182	55	46700										
RNF214	0	genome.wustl.edu	37	chr11	117152922	117152922	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctgctgaaactccccggcccCaaccagtagacaaactggag	9	15	0	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	11	117152922	117152922	C	A	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	missense	c.1648	p.Q550K	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257	213	0	0	144	55	27.64	-	-	-	A	117152922	C	A	117152922	3	1	520	1	0	0	0	0	1	0	0	0	13564	595	21	4	1686	4	RNF214	11	117152922	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	54694588	117152922	17853594	56	46701										
ITGB7	0	genome.wustl.edu	37	chr12	53587622	53587622	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctctgagaagccaagggcccGgagcctcaggagatggggct	16	11	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	12	53587622	53587622	G	T	SNP	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	silent	c.1372	p.R458	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	43	0	0	42	7	14.29	-	-	-	T	53587622	G	T	53587622	2	4	520	1	0	0	0	0	0	0	0	1	7954	1115	39	3		3	ITGB7	12	53587622	Silent	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		53587622	80264273	57	46702										
CAND1	0	genome.wustl.edu	37	chr12	67699121	67699121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tcctttagatcagccttcctCgtttgatgcaactccttata	5	12	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	12	67699121	67699121	C	T	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.1673	p.S558L	0.994	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	374	0	0	415	139	25.05	-	-	-	T	67699121	C	T	67699121	3	4	520	1	0	0	0	0	1	0	0	0	2640	893	31	1	1711	1	CAND1	12	67699121	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	14111499	67699121	66152774	58	46703										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123687511	123687511	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gggactagacatactaggctCtagaacagagtccggggaaa	13	8	1	3			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	12	123687511	123687511	C	G	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	missense	c.985	p.E329Q	0.977	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	211	1	0.47	250	64	20.38	-	-	-	G	123687511	C	G	123687511	3	3	520	1	0	0	0	0	1	0	0	0	9800	922	32	2	2170	2	MPHOSPH9	12	123687511	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	55988390	123687511	10164384	59	46704										
SCFD1	0	genome.wustl.edu	37	chr14	31119774	31119774	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aaaattttatttttcagaaaCtagacaagaaacttcgagaa	5	5	1	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	14	31119774	31119774	C	A	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	1	known	missense	c.673	p.L225I	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	23	0	0	51	13	20.31	-	-	-	A	31119774	C	A	31119774	3	1	520	1	0	0	0	0	1	0	0	0	13976	564	20	4	707	4	SCFD1	14	31119774	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09		31119774	76229766	60	46705										
STRN3	0	genome.wustl.edu	37	chr14	31381224	31381224	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aatacttgctttttggcaggAactgttttttgcaggttcca	9	7	0	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	14	31381224	31381224	A	C	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	silent	c.1539	p.V513	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	285	1	0.35	209	84	28.47	-	-	-	C	31381224	A	C	31381224	2	2	520	1	0	0	0	0	0	0	0	1	15421	233	9	5		5	STRN3	14	31381224	Silent	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09	261450	31381224	75968316	61	46706										
TRPM7	0	genome.wustl.edu	37	chr15	50884259	50884259	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ggtggggatgacagatgtggTatgctagtagatgaactgcc	16	5	0	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	15	50884259	50884259	T	C	SNP	TRPM7	ENST00000313478	human	ensembl	69_37n	-1	known	missense	c.4173	p.I1391M	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	80	0	0	108	30	21.74	-	-	-	C	50884259	T	C	50884259	3	2	520	1	0	0	0	0	1	0	0	0	16687	1628	57	5	1480	5	TRPM7	15	50884259	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09		50884259	51647133	62	46707										
CYP11A1	0	genome.wustl.edu	37	chr15	74631030	74631030	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tcttgtctttgctcagccatCgggttgggtcaaaattttcc	9	10	4	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	15	74631030	74631030	C	A	SNP	CYP11A1	ENST00000268053	human	ensembl	69_37n	-1	known	missense	c.1316	p.R439L	0.353	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459	105	0	0	74	27	26.73	-	-	-	A	74631030	C	A	74631030	3	1	520	1	0	0	0	0	1	0	0	0	4175	884	31	3	257	3	CYP11A1	15	74631030	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	23746771	74631030	27900362	63	46708										
SRRM2	0	genome.wustl.edu	37	chr16	2817327	2817327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cgaacgccagctgcagcagcGgccatgaacttggccagccc	12	16	0	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	16	2817327	2817327	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.6798	p.A2266	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	130	1	0.76	164	45	21.53	-	-	-	A	2817327	G	A	2817327	2	1	520	1	0	0	0	0	0	0	0	1	15260	1103	39	1		1	SRRM2	16	2817327	Silent	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		2817327	87537426	64	46709										
DOC2A	0	genome.wustl.edu	37	chr16	30017763	30017763	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	cattggatttgccaatgtcaTagtcccagacggtgacttcc	9	11	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	16	30017763	30017763	T	C	SNP	DOC2A	ENST00000350119	human	ensembl	69_37n	-1	known	missense	c.1028	p.Y343C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Doc2,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Doc2,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927	72	0	0	66	27	29.03	-	-	-	C	30017763	T	C	30017763	3	2	520	1	0	0	0	0	1	0	0	0	4718	1406	49	5	182	5	DOC2A	16	30017763	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	27200436	30017763	60336990	65	46710										
PRSS53	0	genome.wustl.edu	37	chr16	31098970	31098971	+	Frame_Shift_Del	DEL	CT	CT	-													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ccagggccactcgccagggaCtgtgttgccctcctgaggct							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	16	31098970	31098971	CT	-	DEL	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	frame_shift_del	c.130_129	p.V44fs	0.000:0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	14	0	0	9	5	33.33	-	-	-	-	31098971	CT	-	31098970	7	5	520	1	0	1	0	1	0	0	0	0	12712	565	20	0	1567	0	PRSS53	16	31098970	Frame_Shift_Del	DEL	CT	TCGA-BH-A0DK-01A-21W-A071-09	1081207	31098970	59255783	66	46711										
AARS	0	genome.wustl.edu	37	chr16	70299461	70299461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctgggccagtttcctctcctCttcaaagccatccatgtcta	6	15	4	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	16	70299461	70299461	C	T	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1327	p.E443K	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-synth_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	65	0	0	44	15	25.42	-	-	-	T	70299461	C	T	70299461	3	4	520	1	0	0	0	0	1	0	0	0	19	922	32	2	1627	2	AARS	16	70299461	Missense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	39200491	70299461	20055292	67	46712										
ANKRD11	0	genome.wustl.edu	37	chr16	89351746	89351747	+	Frame_Shift_Ins	INS	-	-	T													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gacaggatacgatgggacgcINStttctttggtgcaatcgtgt							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	16	89351746	89351747	-	T	INS	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1204_1203	p.A401fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	69	0	0	35	7	16.67	-	-	-	T	89351747	-	T	89351746	7	5	520	1	0	1	1	0	0	0	0	0	639	797	28	0	6807	0	ANKRD11	16	89351746	Frame_Shift_Ins	INS	-	TCGA-BH-A0DK-01A-21W-A071-09	19052285	89351746	1003007	68	46713										
KIF1C	0	genome.wustl.edu	37	chr17	4906970	4906970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ccgactcctcaggggcccggGgcatgcgcctgaaggtgagg	17	13	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	17	4906970	4906970	G	A	SNP	KIF1C	ENST00000320785	human	ensembl	69_37n	1	known	missense	c.784	p.G262S	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	24	0	0	8	6	42.86	-	-	-	A	4906970	G	A	4906970	3	1	520	1	0	0	0	0	1	0	0	0	8337	1232	43	4	810	4	KIF1C	17	4906970	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		4906970	76288240	69	46714										
NGFR	0	genome.wustl.edu	37	chr17	47589366	47589366	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gtggcatctccgtggacagcCagagcctgcatgaccagcag	13	13	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	17	47589366	47589366	C	T	SNP	NGFR	ENST00000172229	human	ensembl	69_37n	1	known	nonsense	c.934	p.Q312*	1.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300	12	0	0	9	7	43.75	-	-	-	T	47589366	C	T	47589366	4	4	520	1	0	0	0	0	0	1	0	0	10468	595	21	4	952	4	NGFR	17	47589366	Nonsense_Mutation	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09	42682396	47589366	33605844	70	46715										
ANKRD12	0	genome.wustl.edu	37	chr18	9255963	9255964	+	Frame_Shift_Del	DEL	AG	AG	-													0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ctattaaaaaaactgacgacAgagagaaaagtagagaaaag							TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	18	9255963	9255964	AG	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.2698_2699	p.S903fs	0.991:0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	87	0	0	121	33	21.43	-	-	-	-	9255964	AG	-	9255963	7	5	520	1	0	1	0	1	0	0	0	0	640	180	7	0	2728	0	ANKRD12	18	9255963	Frame_Shift_Del	DEL	AG	TCGA-BH-A0DK-01A-21W-A071-09		9255963	68821285	71	46716										
DSC2	0	genome.wustl.edu	37	chr18	28659860	28659860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tatatatgccatttttgatgGtctctgcctctctatccagg	7	10	2	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	18	28659860	28659860	G	A	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.1616	p.T539I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	174	0	0	269	110	29.02	-	-	-	A	28659860	G	A	28659860	3	1	520	1	0	0	0	0	1	0	0	0	4801	1261	44	4	1153	4	DSC2	18	28659860	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	19403897	28659860	49417388	72	46717										
ABCA7	0	genome.wustl.edu	37	chr19	1043431	1043431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tgatcctcgggaagctactcTttgcaccagatacacctttt	7	12	1	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	19	1043431	1043431	T	A	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.889	p.F297I	0.983	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	10	0	0	14	6	30	-	-	-	A	1043431	T	A	1043431	3	1	520	1	0	0	0	0	1	0	0	0	37	1609	56	5	919	5	ABCA7	19	1043431	Missense_Mutation	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09		1043431	58085552	73	46718										
MUC16	0	genome.wustl.edu	37	chr19	9091401	9091401	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gatgcttctttggtaaaattTccttctgtggaactggtcct	9	8	2	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	19	9091401	9091401	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.414	p.G138	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	405	0	0	253	94	27.01	-	-	-	C	9091401	T	C	9091401	2	2	520	1	0	0	0	0	0	0	0	1	10045	1770	62	5		5	MUC16	19	9091401	Silent	SNP	T	TCGA-BH-A0DK-01A-21W-A071-09	8047970	9091401	50037582	74	46719										
SPRED3	0	genome.wustl.edu	37	chr19	38882594	38882594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tctgcccctcagacaaccttGgagtgtacactgaagccagg	10	13	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	19	38882594	38882594	G	T	SNP	SPRED3	ENST00000338502	human	ensembl	69_37n	1	known	missense	c.186	p.L62F	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED3	HGNC	ENSG00000188766	402	1	0.25	249	71	22.19	-	-	-	T	38882594	G	T	38882594	3	4	520	1	0	0	0	0	1	0	0	0	15185	1339	47	4	192	4	SPRED3	19	38882594	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	29791193	38882594	20246389	75	46720										
PRKD2	0	genome.wustl.edu	37	chr19	47181714	47181714	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aaggcggcgttctggatctgGtcattgatgtcctcatcctc	11	11	4	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	19	47181714	47181714	G	C	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.2277	p.D759E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	25	0	0	21	10	32.26	-	-	-	C	47181714	G	C	47181714	3	2	520	1	0	0	0	0	1	0	0	0	12600	1252	44	4	371	4	PRKD2	19	47181714	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	8299120	47181714	11947269	76	46721										
CPXM1	0	genome.wustl.edu	37	chr20	2774881	2774881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tccaggcgcctgcgaaggtcCgggggcaccttggccccagc	15	16	0	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	20	2774881	2774881	C	T	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	silent	c.2160	p.P720	0.109	superfamily_CarboxyPept-like_regulatory	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	33	0	0	45	13	22.41	-	-	-	T	2774881	C	T	2774881	2	4	520	1	0	0	0	0	0	0	0	1	3867	639	23	1		1	CPXM1	20	2774881	Silent	SNP	C	TCGA-BH-A0DK-01A-21W-A071-09		2774881	60250639	77	46722										
RPRD1B	0	genome.wustl.edu	37	chr20	36676792	36676792	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	aaacctttagaaagattgctGaacatctggcaagaacgaag	9	7	1	4			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	20	36676792	36676792	G	A	SNP	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	silent	c.324	p.L108	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	166	0	0	204	41	16.73	-	-	-	A	36676792	G	A	36676792	2	1	520	1	0	0	0	0	0	0	0	1	13702	1277	45	2		2	RPRD1B	20	36676792	Silent	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	33901911	36676792	26348728	78	46723										
PWP2	0	genome.wustl.edu	37	chr21	45540528	45540528	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gcaggtaccgaaacttccgcAccttcacctctccacgcccc	6	20	2	0			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	21	45540528	45540528	A	T	SNP	PWP2	ENST00000291576	human	ensembl	69_37n	1	known	missense	c.1354	p.T452S	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945	42	0	0	27	6	17.65	-	-	-	T	45540528	A	T	45540528	3	4	520	1	0	0	0	0	1	0	0	0	12927	159	6	5	1400	5	PWP2	21	45540528	Missense_Mutation	SNP	A	TCGA-BH-A0DK-01A-21W-A071-09		45540528	2589367	79	46724										
ADSL	0	genome.wustl.edu	37	chr22	40760339	40760339	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	gccacagagaacatcatcatGgccatggtcaaagctggagg	12	10	3	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	22	40760339	40760339	G	C	SNP	ADSL	ENST00000454266	human	ensembl	69_37n	1	known	missense	c.1203	p.M401I	1.000	pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Lyase1_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,prints_D_crystallin,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900	48	0	0	34	17	33.33	-	-	-	C	40760339	G	C	40760339	3	2	520	1	0	0	0	0	1	0	0	0	346	1348	47	4	1203	4	ADSL	22	40760339	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		40760339	10544227	80	46725										
COL4A5	0	genome.wustl.edu	37	chrX	107924151	107924151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	tggagtacctggatcagctgGccctgagggggaaccgggac	17	10	1	1			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	X	107924151	107924151	G	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.4052	p.G1351V	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	280	2	0.71	150	60	28.57	-	-	-	T	107924151	G	T	107924151	3	4	520	1	0	0	0	0	1	0	0	0	3724	1203	42	4	4219	4	COL4A5	23	107924151	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09		107924151	47346409	81	46726										
DOCK11	0	genome.wustl.edu	37	chrX	117749569	117749569	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.495373335870302	1.45257675438596	1.3280701754386	1.5091706539075	0.37070938215103	0.990584086731441	0	ttctttccatttaggttctgGctgaatacaagtttgaattt	7	6	2	2			TCGA-BH-A0DK-01A-21W-A071-09	TCGA-BH-A0DK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24973c7f-21be-48c6-9a24-636cbf7e39dd	0d68bf71-2788-4cda-a04d-ddf7de2fa8c9	X	117749569	117749569	G	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.3187	p.A1063P	0.991	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	121	0	0	89	39	30.47	-	-	-	C	117749569	G	C	117749569	3	2	520	1	0	0	0	0	1	0	0	0	4721	1203	42	4	3305	4	DOCK11	23	117749569	Missense_Mutation	SNP	G	TCGA-BH-A0DK-01A-21W-A071-09	9825418	117749569	37520991	82	46727										
HRNR	0	genome.wustl.edu	37	chr1	152185679	152185679	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ctcctttgcaataagaatacCcatcttgccctgagccactt	5	14	1	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	1	152185679	152185679	C	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.8426	p.G2809V	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	111	0	0	180	21	10.45	-	-	-	A	152185679	C	A	152185679	3	1	521	1	0	0	0	0	1	0	0	0	7410	623	22	4	130	4	HRNR	1	152185679	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		152185679	97064942	1	46728										
LTBP1	0	genome.wustl.edu	37	chr2	33500981	33500981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	accgcatgactcagagaggcCgttgtgagggtgagtcagct	15	9	2	4			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	2	33500981	33500981	C	G	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.2986	p.R996G	0.116	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	193	0	0	204	63	23.6	-	-	-	G	33500981	C	G	33500981	3	3	521	1	0	0	0	0	1	0	0	0	9139	652	23	3	3108	3	LTBP1	2	33500981	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		33500981	209698392	2	46729										
TTN	0	genome.wustl.edu	37	chr2	179463325	179463325	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tagtgggggagaccactccaGatctgcagatgatttagtcc	12	9	1	4			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	2	179463325	179463325	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.49315	p.L16439M	0.548	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	153	0	0	151	78	34.06	-	-	-	T	179463325	G	T	179463325	3	4	521	1	0	0	0	0	1	0	0	0	16832	933	33	2	50958	2	TTN	2	179463325	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	145962344	179463325	63736048	3	46730										
CCR1	0	genome.wustl.edu	37	chr3	46244889	46244889	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	caggtacttccggaacctctCaccaacgaaggcgtagatca	9	13	2	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	3	46244889	46244889	C	T	SNP	CCR1	ENST00000296140	human	ensembl	69_37n	-1	known	missense	c.916	p.E306K	0.988	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_P2_purnocptor,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	142	0	0	99	45	31.25	-	-	-	T	46244889	C	T	46244889	3	4	521	1	0	0	0	0	1	0	0	0	2968	835	29	2	155	2	CCR1	3	46244889	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		46244889	151777541	4	46731										
GNAI2	0	genome.wustl.edu	37	chr3	50273876	50273876	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	cggcgcgggaggtgaagttgCtgctgttgggtgaggccgcg	21	8	0	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	3	50273876	50273876	C	A	SNP	GNAI2	ENST00000313601	human	ensembl	69_37n	1	known	missense	c.109	p.L37M	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_GproteinA	-	no_errors	GNAI2	HGNC	ENSG00000114353	139	0	0	70	46	39.66	-	-	-	A	50273876	C	A	50273876	3	1	521	1	0	0	0	0	1	0	0	0	6557	796	28	4	111	4	GNAI2	3	50273876	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	4028987	50273876	147748554	5	46732										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	123	0	0	129	211	62.06	-	-	-	G	178952085	A	G	178952085	3	3	521	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09	128678209	178952085	19070345	6	46733										
ANKRD50	0	genome.wustl.edu	37	chr4	125593120	125593120	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ggcttgacaggtataactcaTagccaacattctgtgtcctt	8	10	2	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	4	125593120	125593120	T	C	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	missense	c.1312	p.M438V	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	172	0	0	142	19	11.8	-	-	-	C	125593120	T	C	125593120	3	2	521	1	0	0	0	0	1	0	0	0	676	1406	49	5	2981	5	ANKRD50	4	125593120	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		125593120	65561156	7	46734										
CHD1	0	genome.wustl.edu	37	chr5	98235337	98235337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	actgaatctctcctggttctTtgtttttttcaaagcctgca	6	10	3	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	5	98235337	98235337	T	C	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.932	p.K311R	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	177	0	0	133	24	15.29	-	-	-	C	98235337	T	C	98235337	3	2	521	1	0	0	0	0	1	0	0	0	3352	1841	64	5	4316	5	CHD1	5	98235337	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		98235337	82679923	8	46735										
FAM153B	0	genome.wustl.edu	37	chr5	175511989	175511989	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ggatgtgcttatagttgttgCctcgaaggtatgtatgttca	12	5	1	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	5	175511989	175511989	C	A	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	nonsense	c.24	p.C8*	0.000	NULL	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	303	0	0	326	45	12.13	-	-	-	A	175511989	C	A	175511989	4	1	521	1	0	0	0	0	0	1	0	0	5501	747	26	4	26	4	FAM153B	5	175511989	Nonsense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	77276652	175511989	5403271	9	46736										
KCNQ5	0	genome.wustl.edu	37	chr6	73787062	73787062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	cagataccattgttcttatcGcttcaatagcagttgtttct	6	9	3	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	6	73787062	73787062	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.634	p.A212T	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	151	0	0	119	23	16.2	-	-	-	A	73787062	G	A	73787062	3	1	521	1	0	0	0	0	1	0	0	0	8140	1087	38	1	648	1	KCNQ5	6	73787062	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09		73787062	97328005	10	46737										
COL12A1	0	genome.wustl.edu	37	chr6	75834939	75834939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gctgggattgagattgtgtaAggtatatgatgtcatttctc	12	4	2	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	6	75834939	75834939	A	C	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.6511	p.L2171V	0.268	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	236	1	0.42	201	43	17.62	-	-	-	C	75834939	A	C	75834939	3	2	521	1	0	0	0	0	1	0	0	0	3699	69	3	5	2788	5	COL12A1	6	75834939	Missense_Mutation	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09	2047877	75834939	95280128	11	46738										
LAMB4	0	genome.wustl.edu	37	chr7	107688451	107688451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	cgttgagagggtcagggagcCgtgacagccgggacccctac	16	12	1	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	7	107688451	107688451	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.4228	p.G1410S	0.214	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	165	0	0	140	29	16.96	-	-	-	T	107688451	C	T	107688451	3	4	521	1	0	0	0	0	1	0	0	0	8667	652	23	1	1085	1	LAMB4	7	107688451	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		107688451	51450212	12	46739										
SNTB1	0	genome.wustl.edu	37	chr8	121823729	121823729	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gatccccagcccgcccagctCctgcttcagcaccttcacgc	7	21	2	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	8	121823729	121823729	C	G	SNP	SNTB1	ENST00000395601	human	ensembl	69_37n	-1	known	missense	c.355	p.E119Q	1.000	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164	67	0	0	154	41	20.92	-	-	-	G	121823729	C	G	121823729	3	3	521	1	0	0	0	0	1	0	0	0	14961	864	30	2	1289	2	SNTB1	8	121823729	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		121823729	24540293	13	46740										
ADCY8	0	genome.wustl.edu	37	chr8	131826458	131826458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tcgccaaaggaagtccaggcGggctgtgtactccagctgca	13	12	0	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	8	131826458	131826458	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.2770	p.R924C	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	265	0	0	254	254	50	-	-	-	A	131826458	G	A	131826458	3	1	521	1	0	0	0	0	1	0	0	0	300	1116	39	1	1005	1	ADCY8	8	131826458	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	10002729	131826458	14537564	14	46741										
CDC37L1	0	genome.wustl.edu	37	chr9	4697194	4697194	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	atcttattttatggtgttttCacctggaagctgagaaggta	10	5	2	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	9	4697194	4697194	C	T	SNP	CDC37L1	ENST00000381854	human	ensembl	69_37n	1	known	missense	c.607	p.H203Y	1.000	pfam_Cdc37_Hsp90-bd	pfam_Cdc37_Hsp90-bd	-	no_errors	CDC37L1	HGNC	ENSG00000106993	298	0	0	185	57	23.55	-	-	-	T	4697194	C	T	4697194	3	4	521	1	0	0	0	0	1	0	0	0	3098	826	29	2	621	2	CDC37L1	9	4697194	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		4697194	136516237	15	46742										
CARD9	0	genome.wustl.edu	37	chr9	139266463	139266463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tgcgtgaggggtcgatgaccGaggtgagcgtcacccggaag	18	9	1	3			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	9	139266463	139266463	G	A	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	missense	c.68	p.S23L	0.765	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	49	0	0	87	16	15.53	-	-	-	A	139266463	G	A	139266463	3	1	521	1	0	0	0	0	1	0	0	0	2677	1059	37	1	1643	1	CARD9	9	139266463	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	134569269	139266463	1946968	16	46743										
GHITM	0	genome.wustl.edu	37	chr10	85902493	85902493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ggcagcattggaaccatcgaTggaaaaaatatttaaaagta	9	5	0	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	10	85902493	85902493	T	C	SNP	GHITM	ENST00000372134	human	ensembl	69_37n	1	known	missense	c.212	p.M71T	0.103	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678	148	0	0	109	20	15.5	-	-	-	C	85902493	T	C	85902493	3	2	521	1	0	0	0	0	1	0	0	0	6422	1464	51	5	218	5	GHITM	10	85902493	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		85902493	49632254	17	46744										
OR4C15	0	genome.wustl.edu	37	chr11	55322145	55322145	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ttcttgggcttcctgtccttCctggatgcgtgcttctcatc	9	13	2	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	11	55322145	55322145	C	T	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	silent	c.363	p.F121	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	87	0	0	78	18	18.75	-	-	-	T	55322145	C	T	55322145	2	4	521	1	0	0	0	0	0	0	0	1	11121	854	30	2		2	OR4C15	11	55322145	Silent	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09		55322145	79684371	18	46745										
ANAPC5	0	genome.wustl.edu	37	chr12	121775176	121775176	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gagtgagggccttagtctcaTcattctttagcaaagaagcc	10	9	3	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	12	121775176	121775176	T	A	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	missense	c.677	p.D226V	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	96	0	0	66	21	24.14	-	-	-	A	121775176	T	A	121775176	3	1	521	1	0	0	0	0	1	0	0	0	605	1435	50	5	1638	5	ANAPC5	12	121775176	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		121775176	12076719	19	46746										
POLE	0	genome.wustl.edu	37	chr12	133253205	133253205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gaaacttgaggggcagtttgGtcgtctcaatgtcaaatgcc	12	8	2	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	12	133253205	133253205	G	T	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.869	p.T290N	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	137	0	0	142	33	18.86	-	-	-	T	133253205	G	T	133253205	3	4	521	1	0	0	0	0	1	0	0	0	12270	1261	44	4	6188	4	POLE	12	133253205	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	11478029	133253205	598690	20	46747										
PCDH17	0	genome.wustl.edu	37	chr13	58208939	58208939	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tacagccacccgcagctgggTgggggcaagggcaagaagaa	16	10	0	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	13	58208939	58208939	T	A	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	silent	c.2259	p.G753	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	81	0	0	110	33	22.92	-	-	-	A	58208939	T	A	58208939	2	1	521	1	0	0	0	0	0	0	0	1	11585	1683	59	5		5	PCDH17	13	58208939	Silent	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		58208939	56960939	21	46748										
SLITRK6	0	genome.wustl.edu	37	chr13	86369908	86369908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	aaatggagggctgttgcagaCaacatcaccaattatagact	9	8	1	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	13	86369908	86369908	C	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.736	p.V246F	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	57	0	0	41	12	22.64	-	-	-	A	86369908	C	A	86369908	3	1	521	1	0	0	0	0	1	0	0	0	14836	478	17	4	1793	4	SLITRK6	13	86369908	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	28160969	86369908	28799970	22	46749										
SPTLC2	0	genome.wustl.edu	37	chr14	78043232	78043232	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tgtaggaacccatgtttataAcaccctttattatattccct	4	10	0	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	14	78043232	78043232	A	C	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.509	p.V170G	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	146	0	0	166	21	11.17	-	-	-	C	78043232	A	C	78043232	3	2	521	1	0	0	0	0	1	0	0	0	15215	43	2	5	1215	5	SPTLC2	14	78043232	Missense_Mutation	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09		78043232	29306308	23	46750										
PDXDC1	0	genome.wustl.edu	37	chr16	15100357	15100357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	aagacttcgtagtggatggcTtcaatgtgttatataacaag	10	5	1	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	16	15100357	15100357	T	C	SNP	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	missense	c.496	p.F166L	0.998	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	234	1	0.43	229	52	18.51	-	-	-	C	15100357	T	C	15100357	3	2	521	1	0	0	0	0	1	0	0	0	11769	1609	56	5	518	5	PDXDC1	16	15100357	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		15100357	75254396	24	46751										
CNOT1	0	genome.wustl.edu	37	chr16	58577315	58577316	+	Frame_Shift_Ins	INS	-	-	A													0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tcgtgttgagaatataacagINSaaaaaaaaaaaaacacacag							TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	16	58577315	58577316	-	A	INS	CNOT1	ENST00000441024	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4630_4629	p.L1543fs	0.004:0.000	NULL	superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	35	0	0	25	3	10.71	-	-	-	A	58577316	-	A	58577315	7	5	521	1	0	1	1	0	0	0	0	0	3647	933	33	0	2798	0	CNOT1	16	58577315	Frame_Shift_Ins	INS	-	TCGA-BH-A0DL-01A-11D-A10Y-09	43476958	58577315	31777438	25	46752										
NUDT7	0	genome.wustl.edu	37	chr16	77759477	77759477	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gttgttcaccgtccggtcagAgaaggtaggtggacaaaaaa	13	7	2	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	16	77759477	77759477	A	G	SNP	NUDT7	ENST00000268533	human	ensembl	69_37n	1	known	missense	c.185	p.E62G	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876	135	0	0	135	25	15.62	-	-	-	G	77759477	A	G	77759477	3	3	521	1	0	0	0	0	1	0	0	0	10817	304	11	5	191	5	NUDT7	16	77759477	Missense_Mutation	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09	19182162	77759477	12595276	26	46753										
TP53	0	genome.wustl.edu	37	chr17	7577081	7577081	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ctttcttgcggagattctctTcctctgtgcgccggtctctc	9	14	4	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	17	7577081	7577081	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.857	p.E286A	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	268	0	0	128	83	39.15	-	-	-	G	7577081	T	G	7577081	3	3	521	1	0	0	0	0	1	0	0	0	16477	1783	62	5	429	5	TP53	17	7577081	Missense_Mutation	SNP	T	TCGA-BH-A0DL-01A-11D-A10Y-09		7577081	73618129	27	46754										
MYL12A	0	genome.wustl.edu	37	chr18	3253901	3253901	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	atttagggaagaatccaactGatgagtatctagatgccatg	10	6	1	4			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	18	3253901	3253901	G	A	SNP	MYL12A	ENST00000217652	human	ensembl	69_37n	1	known	missense	c.196	p.D66N	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL12A	HGNC	ENSG00000101608	96	0	0	118	20	14.39	-	-	-	A	3253901	G	A	3253901	3	1	521	1	0	0	0	0	1	0	0	0	10117	1290	45	2	202	2	MYL12A	18	3253901	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09		3253901	74823347	28	46755										
MYL12A	0	genome.wustl.edu	37	chr18	3254033	3254033	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gaaatgcctttgcttgctttGatgaagaagcaactggtaag	11	6	0	3			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	18	3254033	3254033	G	C	SNP	MYL12A	ENST00000217652	human	ensembl	69_37n	1	known	missense	c.328	p.D110H	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL12A	HGNC	ENSG00000101608	138	0	0	155	29	15.76	-	-	-	C	3254033	G	C	3254033	3	2	521	1	0	0	0	0	1	0	0	0	10117	1290	45	2	334	2	MYL12A	18	3254033	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	132	3254033	74823215	29	46756										
ILVBL	0	genome.wustl.edu	37	chr19	15227121	15227121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ggtgctgggccacaggcatcGctgccttctccctgcgacag	13	15	1	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	19	15227121	15227121	G	A	SNP	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	missense	c.1313	p.A438V	0.000	NULL	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	80	0	0	110	17	13.39	-	-	-	A	15227121	G	A	15227121	3	1	521	1	0	0	0	0	1	0	0	0	7769	1087	38	1	605	1	ILVBL	19	15227121	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09		15227121	43901862	30	46757										
ZNF320	0	genome.wustl.edu	37	chr19	53384563	53384563	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ccacactcattacatttgtaAggtttctctccagtatgcag	6	11	2	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	19	53384563	53384563	A	G	SNP	ZNF320	ENST00000391781	human	ensembl	69_37n	-1	known	silent	c.816	p.P272	0.441	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	194	0	0	178	38	17.59	-	-	-	G	53384563	A	G	53384563	2	3	521	1	0	0	0	0	0	0	0	1	17935	59	3	5		5	ZNF320	19	53384563	Silent	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09	38157442	53384563	5744420	31	46758										
CLDN5	0	genome.wustl.edu	37	chr22	19511619	19511619	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	cccggtgctctgcaccacgcAcgacatccacagccccttcc	7	21	1	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	96629b51-8ce6-4a2d-add3-3cd5c1a5c9dc	22	19511619	19511619	A	G	SNP	CLDN5	ENST00000403084	human	ensembl	69_37n	-1	known	missense	c.415	p.C139R	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin5	-	no_errors	CLDN5	HGNC	ENSG00000184113	36	0	0	50	8	13.79	-	-	-	G	19511619	A	G	19511619	3	3	521	1	0	0	0	0	1	0	0	0	3518	159	6	5	500	5	CLDN5	22	19511619	Missense_Mutation	SNP	A	TCGA-BH-A0DL-01A-11D-A10Y-09		19511619	31792947	32	46759										
L3MBTL2	0	genome.wustl.edu	37	chr22	41605850	41605850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gtgaagcagaaaatgaggatCgggaagcaggggaactgccg	17	6	0	3			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	22	41605850	41605850	C	T	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	missense	c.175	p.R59W	0.973	NULL	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	153	0	0	188	28	12.96	-	-	-	T	41605850	C	T	41605850	3	4	521	1	0	0	0	0	1	0	0	0	8646	875	31	1	181	1	L3MBTL2	22	41605850	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	22094231	41605850	9698716	33	46760										
ARHGAP6	0	genome.wustl.edu	37	chrX	11162155	11162155	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gactttgacgacgacaagtgGcccaccagcataaactgccc	9	14	0	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	11162155	11162155	G	A	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	silent	c.2121	p.G707	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	142	0	0	80	30	27.27	-	-	-	A	11162155	G	A	11162155	2	1	521	1	0	0	0	0	0	0	0	1	889	1190	42	4		4	ARHGAP6	23	11162155	Silent	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09		11162155	144108405	34	46761										
PTCHD1	0	genome.wustl.edu	37	chrX	23353126	23353126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gctcggcgccagcttcagccGctaccaggtcgaggagagcg	15	14	1	1			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	23353126	23353126	G	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.134	p.R45H	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	85	0	0	87	32	26.89	-	-	-	A	23353126	G	A	23353126	3	1	521	1	0	0	0	0	1	0	0	0	12812	1087	38	1	136	1	PTCHD1	23	23353126	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	12190971	23353126	131917434	35	46762										
KDM6A	0	genome.wustl.edu	37	chrX	44894229	44894232	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	tgcactttgtccaatgctgaAagtaagtattattaagtact							TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	44894229	44894232	AAGT	-	DEL	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_del	c.618_619	p.E206fs	1.000:1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	537	0	0	449	55	10.87	-	-	-	-	44894232	AAGT	-	44894229	7	5	521	1	0	1	0	1	0	0	0	0	8190	28	1	0	644	0	KDM6A	23	44894229	Frame_Shift_Del	DEL	AAGT	TCGA-BH-A0DL-01A-11D-A10Y-09	21541103	44894229	110376331	36	46763										
ARHGEF9	0	genome.wustl.edu	37	chrX	62917109	62917109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	ctgaaatctgtagatatcttCaatgttcccaaagattacct	5	9	3	3			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	62917109	62917109	C	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.457	p.E153K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	282	0	0	198	70	26.12	-	-	-	T	62917109	C	T	62917109	3	4	521	1	0	0	0	0	1	0	0	0	914	835	29	2	1121	2	ARHGEF9	23	62917109	Missense_Mutation	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	18022880	62917109	92353451	37	46764										
ABCB7	0	genome.wustl.edu	37	chrX	74296386	74296386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gaactgctgttgccatggttGcaactgtatttggtgcatca	11	8	1	0			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	74296386	74296386	G	A	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.560	p.A187V	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	204	0	0	268	36	11.8	-	-	-	A	74296386	G	A	74296386	3	1	521	1	0	0	0	0	1	0	0	0	46	1319	46	4	1749	4	ABCB7	23	74296386	Missense_Mutation	SNP	G	TCGA-BH-A0DL-01A-11D-A10Y-09	11379277	74296386	80974174	38	46765										
NDUFA1	0	genome.wustl.edu	37	chrX	119005892	119005892	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.128205128205128	5	0.284157523808243	2.02380952380952	2.42857142857143	1.94285714285714	0.242424242424242	0.862148760330577	0	gagatgtggttcgagattctCcccggactctccgtcatggg	13	11	3	2			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f	261ed647-077d-4071-978f-ca030947436b	X	119005892	119005892	C	T	SNP	NDUFA1	ENST00000371437	human	ensembl	69_37n	1	known	silent	c.18	p.L6	0.799	pirsf_NADH_Ub_cplx-1_asu_su-1	pirsf_NADH_Ub_cplx-1_asu_su-1	-	no_errors	NDUFA1	HGNC	ENSG00000125356	162	0	0	213	33	13.25	-	-	-	T	119005892	C	T	119005892	2	4	521	1	0	0	0	0	0	0	0	1	10331	842	30	2		2	NDUFA1	23	119005892	Silent	SNP	C	TCGA-BH-A0DL-01A-11D-A10Y-09	44709506	119005892	36264668	39	46766										
TCHH	0	genome.wustl.edu	37	chr1	152079924	152079924	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	agagggctggagcgcactggGacactggcaaactgatgagt	16	8	0	3			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	1	152079924	152079924	G	A	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	silent	c.5769	p.V1923	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	200	0	0	231	46	16.49	-	-	-	A	152079924	G	A	152079924	2	1	522	1	0	0	0	0	0	0	0	1	15795	1161	41	2		2	TCHH	1	152079924	Silent	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09		152079924	97170697	1	46767										
FMO3	0	genome.wustl.edu	37	chr1	171077313	171077313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	tgtcctggtggttggcctggGgaattcgggctgtgatattg	17	6	0	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	1	171077313	171077313	G	T	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	missense	c.578	p.G193V	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	361	0	0	433	75	14.73	-	-	-	T	171077313	G	T	171077313	3	4	522	1	0	0	0	0	1	0	0	0	6002	1232	43	4	592	4	FMO3	1	171077313	Missense_Mutation	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09	18997389	171077313	78173308	2	46768										
STAM2	0	genome.wustl.edu	37	chr2	152988657	152988657	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	tcttcaagtttttcatctatCattggacccatctgttggca	6	10	6	0			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	152988657	152988657	C	T	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	missense	c.996	p.M332I	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	362	1	0.27	307	70	18.52	-	-	-	T	152988657	C	T	152988657	3	4	522	1	0	0	0	0	1	0	0	0	15340	826	29	2	597	2	STAM2	2	152988657	Missense_Mutation	SNP	C	TCGA-BH-A0DO-01B-11D-A12B-09		152988657	90210716	3	46769										
TTN	0	genome.wustl.edu	37	chr2	179449667	179449667	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	gcgtctatatcagaaatgtcAaatggaggctgaggggggcc	15	7	3	2			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	179449667	179449667	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.56997	p.F18999	0.975	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	47	0	0	34	4	10.53	-	-	-	G	179449667	A	G	179449667	2	3	522	1	0	0	0	0	0	0	0	1	16832	127	5	5		5	TTN	2	179449667	Silent	SNP	A	TCGA-BH-A0DO-01B-11D-A12B-09	26461010	179449667	63749706	4	46770										
PASK	0	genome.wustl.edu	37	chr2	242051776	242051776	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	cagcttgattgtgaagtcctCggcgatcacgatgttctcat	10	10	2	2			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	242051776	242051776	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.3433	p.E1145K	0.956	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	149	1	0.67	102	29	22.14	-	-	-	T	242051776	C	T	242051776	3	4	522	1	0	0	0	0	1	0	0	0	11545	893	31	1	575	1	PASK	2	242051776	Missense_Mutation	SNP	C	TCGA-BH-A0DO-01B-11D-A12B-09	62602109	242051776	1147597	5	46771										
CACNA1D	0	genome.wustl.edu	37	chr3	53779689	53779689	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ttcgtggccatccggaccatCggcaacatcatgatcgtcac	9	14	2	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	3	53779689	53779689	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	silent	c.3105	p.I1035	0.890	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	297	0	0	261	69	20.91	-	-	-	T	53779689	C	T	53779689	2	4	522	1	0	0	0	0	0	0	0	1	2566	874	31	1		1	CACNA1D	3	53779689	Silent	SNP	C	TCGA-BH-A0DO-01B-11D-A12B-09		53779689	144242741	6	46772										
PIK3CA	0	genome.wustl.edu	37	chr3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	gagtatttcatgaaacaaatGaatgatgcacatcatggtgg	10	5	2	3			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	3	178952074	178952074	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3129	p.M1043I	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	183	0	0	198	43	17.77	-	-	-	A	178952074	G	A	178952074	3	1	522	1	0	0	0	0	1	0	0	0	11987	1290	45	2	3207	2	PIK3CA	3	178952074	Missense_Mutation	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09	125172385	178952074	19070356	7	46773										
S100P	0	genome.wustl.edu	37	chr4	6698746	6698746	+	Frame_Shift_Del	DEL	T	T	-													0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	cgtctgcctgtcacaagtacTttgagaaggcaggactcaaa							TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	4	6698746	6698746	T	-	DEL	S100P	ENST00000296370	human	ensembl	69_37n	1	known	frame_shift_del	c.265	p.F89fs	0.056	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100P	HGNC	ENSG00000163993	141	0	0	148	30	16.76	-	-	-	-	6698746	T	-	6698746	7	5	522	1	0	1	0	1	0	0	0	0	13876	1609	56	0	271	0	S100P	4	6698746	Frame_Shift_Del	DEL	T	TCGA-BH-A0DO-01B-11D-A12B-09		6698746	184455530	8	46774										
HIVEP2	0	genome.wustl.edu	37	chr6	143074830	143074830	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	cctccattggcaggggcaatGtgggtgaaggatgtaaactg							TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	6	143074830	143074830	G	-	DEL	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	frame_shift_del	c.6755	p.T2252fs	0.878	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	206	0	0	174	32	15.31	-	-	-	-	143074830	G	-	143074830	7	5	522	1	0	1	0	1	0	0	0	0	7238	1377	48	0	589	0	HIVEP2	6	143074830	Frame_Shift_Del	DEL	G	TCGA-BH-A0DO-01B-11D-A12B-09		143074830	28040237	9	46775										
CSMD1	0	genome.wustl.edu	37	chr8	4494943	4494943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ttcttcaagagcaaaggtatGgaaggacaactgtatcctat	9	7	2	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	8	4494943	4494943	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.223	p.H75Y	0.932	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	166	1	0.6	129	34	20.86	-	-	-	A	4494943	G	A	4494943	3	1	522	1	0	0	0	0	1	0	0	0	3976	1348	47	4	10560	4	CSMD1	8	4494943	Missense_Mutation	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09		4494943	141869079	10	46776										
SETX	0	genome.wustl.edu	37	chr9	135153491	135153491	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	gtttctgttataaacataatTagaagggaagaggcatatgt	10	3	1	2			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	9	135153491	135153491	T	G	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.6808	p.N2270H	0.093	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	227	0	0	167	48	22.33	-	-	-	G	135153491	T	G	135153491	3	3	522	1	0	0	0	0	1	0	0	0	14229	1754	61	5	1249	5	SETX	9	135153491	Missense_Mutation	SNP	T	TCGA-BH-A0DO-01B-11D-A12B-09		135153491	6059940	11	46777										
MMP12	0	genome.wustl.edu	37	chr11	102743804	102743804	+	RNA	DEL	T	T	-													0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ttcatttttgtcactggaagTttgtttatctcaaggccata							TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	11	102743804	102743804	T	-	DEL	MMP12	ENST00000326227	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347	89	0	0	89	17	15.6	-	-	-	-	102743804	T	-	102743804	6	5	522	0	1	1	0	1	0	0	0	0	9722	1722	60	0		0	MMP12	11	102743804	RNA	DEL	T	TCGA-BH-A0DO-01B-11D-A12B-09		102743804	32262712	12	46778										
SLITRK1	0	genome.wustl.edu	37	chr13	84454919	84454919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ctgcagtctggtgggggcttCgcagaccactcggccgatca	14	13	2	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	13	84454919	84454919	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.724	p.E242K	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	149	0	0	138	36	20.69	-	-	-	T	84454919	C	T	84454919	3	4	522	1	0	0	0	0	1	0	0	0	14831	893	31	1	1370	1	SLITRK1	13	84454919	Missense_Mutation	SNP	C	TCGA-BH-A0DO-01B-11D-A12B-09		84454919	30714959	13	46779										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1793389	1793389	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	cctggctgacggcacggtacGtgcacagatcgggggcaagc	16	12	0	2			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	16	1793389	1793389	G	C	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.656	p.R219P	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	46	0	0	51	6	10.53	-	-	-	C	1793389	G	C	1793389	3	2	522	1	0	0	0	0	1	0	0	0	9357	1145	40	3	674	3	MAPK8IP3	16	1793389	Missense_Mutation	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09		1793389	88561364	14	46780										
TP53I13	0	genome.wustl.edu	37	chr17	27899472	27899472	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ctcaggtgcccaacgggcaaGgcagcccagggggctgtgtc							TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	17	27899472	27899472	G	-	DEL	TP53I13	ENST00000301057	human	ensembl	69_37n	1	known	frame_shift_del	c.826	p.G276fs	0.748	NULL	NULL	-	no_errors	TP53I13	HGNC	ENSG00000167543	11	0	0	4	2	33.33	-	-	-	-	27899472	G	-	27899472	7	5	522	1	0	1	0	1	0	0	0	0	16482	1000	35	0	848	0	TP53I13	17	27899472	Frame_Shift_Del	DEL	G	TCGA-BH-A0DO-01B-11D-A12B-09		27899472	53295738	15	46781										
ZNF568	0	genome.wustl.edu	37	chr19	37441513	37441513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	gggaaagcttttattcagatGtcaaacctcattcgacacca	7	10	3	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	19	37441513	37441513	G	A	SNP	ZNF568	ENST00000333987	human	ensembl	69_37n	1	known	missense	c.1458	p.M486I	0.489	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	166	0	0	150	24	13.79	-	-	-	A	37441513	G	A	37441513	3	1	522	1	0	0	0	0	1	0	0	0	18095	1377	48	4	1476	4	ZNF568	19	37441513	Missense_Mutation	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09		37441513	21687470	16	46782										
SIGLEC6	0	genome.wustl.edu	37	chr19	52033695	52033695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	actggctggttcctacctgcGctgtttccttggaagatgct	11	11	0	1			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	19	52033695	52033695	G	A	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	silent	c.750	p.S250	0.069	pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	121	0	0	120	21	14.89	-	-	-	A	52033695	G	A	52033695	2	1	522	1	0	0	0	0	0	0	0	1	14401	1078	38	1		1	SIGLEC6	19	52033695	Silent	SNP	G	TCGA-BH-A0DO-01B-11D-A12B-09	14592182	52033695	7095288	17	46783										
MX1	0	genome.wustl.edu	37	chr21	42823096	42823096	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	ttttctctctttgattagatAtggtccggcttgctttcaca	7	9	3	2			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	21	42823096	42823096	A	G	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	missense	c.1435	p.M479V	0.271	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	401	1	0.25	340	80	19.05	-	-	-	G	42823096	A	G	42823096	3	3	522	1	0	0	0	0	1	0	0	0	10069	449	16	5	1477	5	MX1	21	42823096	Missense_Mutation	SNP	A	TCGA-BH-A0DO-01B-11D-A12B-09		42823096	5306799	18	46784										
PTCHD1	0	genome.wustl.edu	37	chrX	23411483	23411483	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.90236484052489	1.02572898799314	0	1.12830188679245	0.333333333333333	0.930327025915261	0	acagacatgttgaggaattcCtttctgaaagcccctcaatt	7	10	2	3			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	X	23411483	23411483	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	silent	c.1848	p.S616	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	81	0	0	67	11	14.1	-	-	-	T	23411483	C	T	23411483	2	4	522	1	0	0	0	0	0	0	0	1	12812	668	24	4		4	PTCHD1	23	23411483	Silent	SNP	C	TCGA-BH-A0DO-01B-11D-A12B-09		23411483	131859077	19	46785										
FLG	0	genome.wustl.edu	37	chr1	152282524	152282524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	cataatggtttctggaagccGactcagaccgcctctcagag	10	12	3	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	1	152282524	152282524	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.4838	p.S1613L	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	121	0	0	189	24	11.27	-	-	-	A	152282524	G	A	152282524	3	1	523	1	0	0	0	0	1	0	0	0	5968	1059	37	1	7351	1	FLG	1	152282524	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		152282524	96968097	1	46786										
HPCAL1	0	genome.wustl.edu	37	chr2	10559956	10559956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	agaacacggagttcaccgacCacgagctgcaggagtggtac	13	11	1	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	2	10559956	10559956	C	T	SNP	HPCAL1	ENST00000307845	human	ensembl	69_37n	1	known	missense	c.73	p.H25Y	1.000	prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756	25	0	0	16	9	36	-	-	-	T	10559956	C	T	10559956	3	4	523	1	0	0	0	0	1	0	0	0	7381	594	21	4	75	4	HPCAL1	2	10559956	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09		10559956	232639417	2	46787										
PLB1	0	genome.wustl.edu	37	chr2	28812939	28812940	+	Frame_Shift_Del	DEL	AC	AC	-													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gatcaatatcacatgtccgaAccaggtagagtggaaagcac							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	2	28812939	28812940	AC	-	DEL	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	frame_shift_del	c.2051_2052	p.N684fs	0.000:0.003	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	69	0	0	59	35	35	-	-	-	-	28812940	AC	-	28812939	7	5	523	1	0	1	0	1	0	0	0	0	12098	43	2	0	2231	0	PLB1	2	28812939	Frame_Shift_Del	DEL	AC	TCGA-BH-A0DP-01A-21W-A071-09	18252983	28812939	214386434	3	46788										
ITGB5	0	genome.wustl.edu	37	chr3	124540269	124540269	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	atgcgatgtggggcacatcaTctgttgtgaacaccagcaaa	11	9	2	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	124540269	124540269	T	C	SNP	ITGB5	ENST00000296181	human	ensembl	69_37n	-1	known	missense	c.833	p.D278G	0.986	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781	80	0	0	95	21	18.1	-	-	-	C	124540269	T	C	124540269	3	2	523	1	0	0	0	0	1	0	0	0	7952	1435	50	5	1606	5	ITGB5	3	124540269	Missense_Mutation	SNP	T	TCGA-BH-A0DP-01A-21W-A071-09		124540269	73482161	4	46789										
PIK3R4	0	genome.wustl.edu	37	chr3	130452677	130452677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tttggaatcacagtatttaaGggtctgtaggcaggatgtta	12	4	2	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	130452677	130452677	G	C	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.1165	p.L389V	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	560	0	0	336	65	16.09	-	-	-	C	130452677	G	C	130452677	3	2	523	1	0	0	0	0	1	0	0	0	11995	1000	35	4	2979	4	PIK3R4	3	130452677	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09	5912408	130452677	67569753	5	46790										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	84	0	0	68	16	19.05	-	-	-	A	178936082	G	A	178936082	3	1	523	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09	48483405	178936082	19086348	6	46791										
CLRN2	0	genome.wustl.edu	37	chr4	17517100	17517100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	ggctcttccgagggtgtaaaGtgcggcagtgtgggcttggg	19	7	1	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	4	17517100	17517100	G	A	SNP	CLRN2	ENST00000511148	human	ensembl	69_37n	1	known	missense	c.211	p.V71M	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLRN2	HGNC	ENSG00000249581	67	0	0	26	11	29.73	-	-	-	A	17517100	G	A	17517100	3	1	523	1	0	0	0	0	1	0	0	0	3588	1029	36	4	213	4	CLRN2	4	17517100	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		17517100	173637176	7	46792										
NPY1R	0	genome.wustl.edu	37	chr4	164247685	164247685	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gactgaatgattttcaacctGggaaaataatgttgaattca	8	5	2	3			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	4	164247685	164247685	G	A	SNP	NPY1R	ENST00000296533	human	ensembl	69_37n	-1	known	nonsense	c.22	p.Q8*	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	167	1	0.6	165	20	10.75	-	-	-	A	164247685	G	A	164247685	4	1	523	1	0	0	0	0	0	1	0	0	10681	1357	47	4	1140	4	NPY1R	4	164247685	Nonsense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09	146730585	164247685	26906591	8	46793										
EXOC3	0	genome.wustl.edu	37	chr5	453697	453697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	agctggctaagcagctgtggAtggtgctgcagaggtcactg	16	8	1	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	5	453697	453697	A	G	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	missense	c.577	p.M193V	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	41	0	0	65	54	45.38	-	-	-	G	453697	A	G	453697	3	3	523	1	0	0	0	0	1	0	0	0	5339	333	12	5	587	5	EXOC3	5	453697	Missense_Mutation	SNP	A	TCGA-BH-A0DP-01A-21W-A071-09		453697	180461563	9	46794										
PCDHB12	0	genome.wustl.edu	37	chr5	140590267	140590267	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gtggcggtggacggtgactcGggccagaacgcctggctgtc	18	11	0	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	5	140590267	140590267	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	silent	c.1788	p.S596	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	66	0	0	69	18	20.69	-	-	-	A	140590267	G	A	140590267	2	1	523	1	0	0	0	0	0	0	0	1	11610	1103	39	1		1	PCDHB12	5	140590267	Silent	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09	140136570	140590267	40324993	10	46795										
RNGTT	0	genome.wustl.edu	37	chr6	89600290	89600290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	attttgcttgtccatggaaaCaggctgtgctccagggaatc	11	9	0	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	6	89600290	89600290	C	T	SNP	RNGTT	ENST00000369485	human	ensembl	69_37n	-1	known	missense	c.820	p.V274I	1.000	pfam_mRNA_cap_enzyme,pirsf_mRNA_cap_enz_bifunc	pfam_mRNA_cap_enzyme,pfam_mRNA_cap_enzyme_C,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_NA-bd_OB-fold-like,pirsf_mRNA_cap_enz_bifunc,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	RNGTT	HGNC	ENSG00000111880	84	0	0	68	9	11.69	-	-	-	T	89600290	C	T	89600290	3	4	523	1	0	0	0	0	1	0	0	0	13589	478	17	4	1009	4	RNGTT	6	89600290	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09		89600290	81514777	11	46796										
ERICH1	0	genome.wustl.edu	37	chr8	642576	642576	+	Frame_Shift_Del	DEL	T	T	-													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	caggaggcccgctggcagtgTagagccgtcgggcagtcggg							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	8	642576	642576	T	-	DEL	ERICH1	ENST00000262109	human	ensembl	69_37n	-1	known	frame_shift_del	c.206	p.Y69fs	0.246	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714	58	0	0	25	26	50.98	-	-	-	-	642576	T	-	642576	7	5	523	1	0	1	0	1	0	0	0	0	5267	1638	57	0	1141	0	ERICH1	8	642576	Frame_Shift_Del	DEL	T	TCGA-BH-A0DP-01A-21W-A071-09		642576	145721446	12	46797										
EBF2	0	genome.wustl.edu	37	chr8	25897605	25897605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	cggattcttattctgtccctCgtaagcgatgggctgtgaag	12	9	2	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	8	25897605	25897605	C	T	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.421	p.E141K	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	69	0	0	42	11	20.75	-	-	-	T	25897605	C	T	25897605	3	4	523	1	0	0	0	0	1	0	0	0	4916	893	31	1	1354	1	EBF2	8	25897605	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09	25255029	25897605	120466417	13	46798										
PTK2B	0	genome.wustl.edu	37	chr8	27289870	27289871	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tcagctgggcattgaaggtgINSccccccaggtgagtgtctct							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	8	27289870	27289871	-	C	INS	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	frame_shift_ins	c.979_980	p.Q329fs	0.999:1.000	pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	29	0	0	15	3	16.67	-	-	-	C	27289871	-	C	27289870	7	5	523	1	0	1	1	0	0	0	0	0	12844	1319	46	0	1013	0	PTK2B	8	27289870	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	1392265	27289870	119074152	14	46799										
CEL	0	genome.wustl.edu	37	chr9	135941981	135941982	+	Frame_Shift_Ins	INS	-	-	G													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	agaggaatatcgcggccttcINSgggggggaccccaacaacat							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	9	135941981	135941982	-	G	INS	CEL	ENST00000372080	human	ensembl	69_37n	1	known	frame_shift_ins	c.612_613	p.D206fs	0.798:1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	18	0	0	20	3	13.04	-	-	-	G	135941982	-	G	135941981	7	5	523	1	0	1	1	0	0	0	0	0	3238	883	31	0	630	0	CEL	9	135941981	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09		135941981	5271450	15	46800										
ATE1	0	genome.wustl.edu	37	chr10	123549742	123549742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	ttttcaagtgaaggcaggcaTtgctcaatgggtacccaaac	10	9	2	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	10	123549742	123549742	T	C	SNP	ATE1	ENST00000423243	human	ensembl	69_37n	-1	known	missense	c.1309	p.M437V	1.000	pirsf_Arg-tRNA-P_Trfase_1_euk	pfam_Arg-tRNA-P_Trfase_C,pfam_Arg_tRNA_PTrfase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Arg-tRNA-P_Trfase_1_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATE1	HGNC	ENSG00000107669	168	0	0	136	23	14.47	-	-	-	C	123549742	T	C	123549742	3	2	523	1	0	0	0	0	1	0	0	0	1082	1490	52	5	244	5	ATE1	10	123549742	Missense_Mutation	SNP	T	TCGA-BH-A0DP-01A-21W-A071-09		123549742	11985005	16	46801										
TRIM21	0	genome.wustl.edu	37	chr11	4409560	4409560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tccagtgctgagctgtggcaCcttcgatctagctctgagat	11	11	2	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	11	4409560	4409560	C	T	SNP	TRIM21	ENST00000254436	human	ensembl	69_37n	-1	known	silent	c.705	p.R235	0.444	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109	373	0	0	392	45	10.23	-	-	-	T	4409560	C	T	4409560	2	4	523	1	0	0	0	0	0	0	0	1	16591	506	18	4		4	TRIM21	11	4409560	Silent	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09		4409560	130596956	17	46802										
NUP160	0	genome.wustl.edu	37	chr11	47814420	47814420	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tgagagcagccagataacagTtgccttgtttctcaagtccc	9	11	1	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	11	47814420	47814420	T	C	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.3368	p.N1123S	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	269	0	0	194	47	19.5	-	-	-	C	47814420	T	C	47814420	3	2	523	1	0	0	0	0	1	0	0	0	10830	1725	60	5	978	5	NUP160	11	47814420	Missense_Mutation	SNP	T	TCGA-BH-A0DP-01A-21W-A071-09	43404860	47814420	87192096	18	46803										
TAF6L	0	genome.wustl.edu	37	chr11	62554100	62554100	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	acctgccatgggacagccttCtctttcaagagtcgtcctcc	8	15	2	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	11	62554100	62554100	C	T	SNP	TAF6L	ENST00000294168	human	ensembl	69_37n	1	known	missense	c.1201	p.L401F	0.999	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227	28	0	0	10	4	28.57	-	-	-	T	62554100	C	T	62554100	3	4	523	1	0	0	0	0	1	0	0	0	15623	913	32	2	1239	2	TAF6L	11	62554100	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09	14739680	62554100	72452416	19	46804										
GPR182	0	genome.wustl.edu	37	chr12	57389644	57389644	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tacagcacctgggccctggcGgtggccctgtccaccaccat	11	17	0	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	12	57389644	57389644	G	A	SNP	GPR182	ENST00000300098	human	ensembl	69_37n	1	known	silent	c.651	p.A217	0.002	pfam_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_G10D_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR182	HGNC	ENSG00000166856	110	0	0	87	43	33.08	-	-	-	A	57389644	G	A	57389644	2	1	523	1	0	0	0	0	0	0	0	1	6727	1103	39	1		1	GPR182	12	57389644	Silent	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		57389644	76462251	20	46805										
RAD9B	0	genome.wustl.edu	37	chr12	110943484	110943485	+	Frame_Shift_Ins	INS	-	-	T													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gtgtcctgttctctcctgtgINSttttttcagcattatcaatg							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	12	110943484	110943485	-	T	INS	RAD9B	ENST00000392672	human	ensembl	69_37n	1	known	frame_shift_ins	c.180_181	p.Q62fs	0.690:0.996	pfam_Rad9,pirsf_Cell_cycle_RAD9	pfam_Rad9,pirsf_Cell_cycle_RAD9	-	no_errors	RAD9B	HGNC	ENSG00000151164	39	0	0	27	3	10	-	-	-	T	110943485	-	T	110943484	7	5	523	1	0	1	1	0	0	0	0	0	13079	1364	48	0	190	0	RAD9B	12	110943484	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	53553840	110943484	22908411	21	46806										
DCLK1	0	genome.wustl.edu	37	chr13	36700119	36700119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	actttcttggccttcttctcGgagctgagcgtctgcagcgt	11	12	4	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	13	36700119	36700119	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	silent	c.156	p.S52	0.889	superfamily_Doublecortin_dom,smart_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	86	0	0	38	6	13.64	-	-	-	A	36700119	G	A	36700119	2	1	523	1	0	0	0	0	0	0	0	1	4322	1103	39	1		1	DCLK1	13	36700119	Silent	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		36700119	78469759	22	46807										
GAS6	0	genome.wustl.edu	37	chr13	114542717	114542718	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tacctttgtcgcagagccggINScccccccagccagctttaca							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	13	114542717	114542718	-	C	INS	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	frame_shift_ins	c.450_449	p.R151fs	0.842:0.997	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	29	0	0	31	4	11.43	-	-	-	C	114542718	-	C	114542717	7	5	523	1	0	1	1	0	0	0	0	0	6299	1190	42	0	1630	0	GAS6	13	114542717	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	77842598	114542717	627161	23	46808										
ATP2C2	0	genome.wustl.edu	37	chr16	84497267	84497267	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	catccgtcttcattttgtcaGagctcctcaaactatgtgaa	6	11	4	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	16	84497267	84497267	G	A	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.2770	p.E924K	0.999	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	86	0	0	72	64	46.72	-	-	-	A	84497267	G	A	84497267	3	1	523	1	0	0	0	0	1	0	0	0	1148	943	33	2	2876	2	ATP2C2	16	84497267	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		84497267	5857486	24	46809										
MAP2K4	0	genome.wustl.edu	37	chr17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tatggaactcatgtctacctCgtttgataagttttacaaat	6	7	2	1			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	17	12011144	12011144	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.584	p.S195L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	282	0	0	101	94	47.96	-	-	-	T	12011144	C	T	12011144	3	4	523	1	0	0	0	0	1	0	0	0	9310	893	31	1	569	1	MAP2K4	17	12011144	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09		12011144	69184066	25	46810										
GRN	0	genome.wustl.edu	37	chr17	42427851	42427851	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gtgcactgctgtccgcacggTgccttctgcgacctggttca	12	14	2	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	17	42427851	42427851	T	G	SNP	GRN	ENST00000586782	human	ensembl	69_37n	1	known	missense	c.484	p.C162G	0.001	smart_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582	52	0	0	28	4	12.5	-	-	-	G	42427851	T	G	42427851	3	3	523	1	0	0	0	0	1	0	0	0	6855	1683	59	5	522	5	GRN	17	42427851	Missense_Mutation	SNP	T	TCGA-BH-A0DP-01A-21W-A071-09	30416707	42427851	38767359	26	46811										
NXPH3	0	genome.wustl.edu	37	chr17	47656146	47656147	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	cttggggcattcttgggcagINSccccccaaccgcccgaacca							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	17	47656146	47656147	-	C	INS	NXPH3	ENST00000328741	human	ensembl	69_37n	1	known	frame_shift_ins	c.243_244	p.N83fs	0.998:0.995	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH3	HGNC	ENSG00000182575	27	0	0	16	2	11.11	-	-	-	C	47656147	-	C	47656146	7	5	523	1	0	1	1	0	0	0	0	0	10865	962	34	0	249	0	NXPH3	17	47656146	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	5228295	47656146	33539064	27	46812										
CCDC11	0	genome.wustl.edu	37	chr18	47777321	47777321	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gcatatcctgttcattctcaTgtttaatctgtgcgttgtta	7	8	3	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	18	47777321	47777321	T	C	SNP	CCDC11	ENST00000398545	human	ensembl	69_37n	-1	known	missense	c.803	p.H268R	0.896	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361	623	0	0	417	140	25	-	-	-	C	47777321	T	C	47777321	3	2	523	1	0	0	0	0	1	0	0	0	2771	1464	51	5	757	5	CCDC11	18	47777321	Missense_Mutation	SNP	T	TCGA-BH-A0DP-01A-21W-A071-09		47777321	30299927	28	46813										
RPL18A	0	genome.wustl.edu	37	chr19	17972210	17972211	+	Frame_Shift_Ins	INS	-	-	CT													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tcatgtcgtcgccaagtcccINSgcttctggtactttgtatct							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	19	17972210	17972211	-	CT	INS	RPL18A	ENST00000222247	human	ensembl	69_37n	1	known	frame_shift_ins	c.127_128	p.R43fs	1.000:1.000	pfam_Ribosomal_L18a/LX	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640	12	0	0	20	9	31.03	-	-	-	CT	17972211	-	CT	17972210	7	5	523	1	0	1	1	0	0	0	0	0	13651	652	23	0	133	0	RPL18A	19	17972210	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09		17972210	41156773	29	46814										
ZC3H4	0	genome.wustl.edu	37	chr19	47570533	47570534	+	Frame_Shift_Ins	INS	-	-	G													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	gattgcagggccgcgggcacINSggggggcactgcgtcctgct							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	19	47570533	47570534	-	G	INS	ZC3H4	ENST00000253048	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2992_2991	p.V997fs	0.128:0.006	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749	14	0	0	13	2	13.33	-	-	-	G	47570534	-	G	47570533	7	5	523	1	0	1	1	0	0	0	0	0	17666	536	19	0	923	0	ZC3H4	19	47570533	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	29598323	47570533	11558450	30	46815										
NINL	0	genome.wustl.edu	37	chr20	25459629	25459629	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	ctgggtgcagcagggtgccaGgcccatctgctcaggctcgg	16	13	2	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	20	25459629	25459629	G	C	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.2131	p.L711V	0.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	30	0	0	10	7	41.18	-	-	-	C	25459629	G	C	25459629	3	2	523	1	0	0	0	0	1	0	0	0	10492	991	35	4	2053	4	NINL	20	25459629	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09		25459629	37565891	31	46816										
SUSD2	0	genome.wustl.edu	37	chr22	24583622	24583622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tgtaccaacccaagcacgacCccaccttcgagcccctcttc	5	20	1	0			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	22	24583622	24583622	C	G	SNP	SUSD2	ENST00000358321	human	ensembl	69_37n	1	known	missense	c.1975	p.P659A	0.734	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Complement_control_module,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994	17	0	0	22	56	71.79	-	-	-	G	24583622	C	G	24583622	3	3	523	1	0	0	0	0	1	0	0	0	15499	623	22	4	2021	4	SUSD2	22	24583622	Missense_Mutation	SNP	C	TCGA-BH-A0DP-01A-21W-A071-09		24583622	26720944	32	46817										
SGSM1	0	genome.wustl.edu	37	chr22	25308612	25308612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	tctgtgatgctttctcagagGcccttgccttcagctgcttc	9	13	3	2			TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	22	25308612	25308612	G	T	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.2986	p.A996S	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	51	0	0	43	26	37.68	-	-	-	T	25308612	G	T	25308612	3	4	523	1	0	0	0	0	1	0	0	0	14310	1203	42	4	3076	4	SGSM1	22	25308612	Missense_Mutation	SNP	G	TCGA-BH-A0DP-01A-21W-A071-09	724990	25308612	25995954	33	46818										
SBF1	0	genome.wustl.edu	37	chr22	50900046	50900047	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	atgctggtcccccagcactgINSccccccgcgccctcctcacg							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	22	50900046	50900047	-	C	INS	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2745_2744	p.S916fs	0.064:0.930	pfam_GRAM,smart_GRAM	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	10	0	0	8	2	20	-	-	-	C	50900047	-	C	50900046	7	5	523	1	0	1	1	0	0	0	0	0	13945	1306	46	0	3016	0	SBF1	22	50900046	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09	25591434	50900046	404520	34	46819										
FLNA	0	genome.wustl.edu	37	chrX	153578025	153578026	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.79133532817198	1.26470588235294	0	1.53571428571429	0.1	0.5224358974359	0	cccaggctcacctgtgacttINStggccttgaaggggctgccc							TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	X	153578025	153578026	-	C	INS	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7544_7543	p.K2515fs	0.991:1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	14	0	0	6	17	73.91	-	-	-	C	153578026	-	C	153578025	7	5	523	1	0	1	1	0	0	0	0	0	5979	1841	64	0	411	0	FLNA	23	153578025	Frame_Shift_Ins	INS	-	TCGA-BH-A0DP-01A-21W-A071-09		153578025	1692535	35	46820										
COL16A1	0	genome.wustl.edu	37	chr1	32127285	32127285	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ggtcccatgagtccagggggGccagcaggaccagggtcccc	16	14	0	1			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	1	32127285	32127285	G	A	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	silent	c.3702	p.G1234	0.922	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	105	0	0	54	20	27.03	-	-	-	A	32127285	G	A	32127285	2	1	524	1	0	0	0	0	0	0	0	1	3703	1190	42	4		4	COL16A1	1	32127285	Silent	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09		32127285	217123336	1	46821										
SMYD2	0	genome.wustl.edu	37	chr1	214504346	214504346	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gatcccccaaaggcagaagcCatccgagacatggtcagata	10	12	1	3			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	1	214504346	214504346	C	T	SNP	SMYD2	ENST00000366957	human	ensembl	69_37n	1	known	silent	c.870	p.A290	0.928	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499	131	0	0	117	13	10	-	-	-	T	214504346	C	T	214504346	2	4	524	1	0	0	0	0	0	0	0	1	14911	581	21	4		4	SMYD2	1	214504346	Silent	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09	182377061	214504346	34746275	2	46822										
TSGA10	0	genome.wustl.edu	37	chr2	99634761	99634761	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ttcattgtagaactcatatgAtaagcattacttgaataatt	5	5	2	3			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	2	99634761	99634761	A	T	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	nonsense	c.1974	p.Y658*	0.995	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	136	0	0	158	79	33.33	-	-	-	T	99634761	A	T	99634761	4	4	524	1	0	0	0	0	0	1	0	0	16713	340	12	5	130	5	TSGA10	2	99634761	Nonsense_Mutation	SNP	A	TCGA-BH-A0DQ-01A-11D-A099-09		99634761	143564612	3	46823										
PGAP1	0	genome.wustl.edu	37	chr2	197709249	197709249	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ttttgaaaataaaacttaccAcaggctggctattcttaaaa	5	7	1	1			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	2	197709249	197709249	A	G	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.2336	p.V779A	0.986	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	32	0	0	15	16	51.61	-	-	-	G	197709249	A	G	197709249	3	3	524	1	0	0	0	0	1	0	0	0	11851	173	6	5	448	5	PGAP1	2	197709249	Missense_Mutation	SNP	A	TCGA-BH-A0DQ-01A-11D-A099-09	98074488	197709249	45490124	4	46824										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	50	0	0	32	21	39.62	-	-	-	C	198266834	T	C	198266834	3	2	524	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-BH-A0DQ-01A-11D-A099-09	557585	198266834	44932539	5	46825										
NRP2	0	genome.wustl.edu	37	chr2	206610543	206610543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	cattccggcacagtatgtgcGggtatacccggagaggtggt	15	9	0	1			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	2	206610543	206610543	G	A	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.1715	p.R572Q	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	176	0	0	91	63	40.13	-	-	-	A	206610543	G	A	206610543	3	1	524	1	0	0	0	0	1	0	0	0	10734	1116	39	1	1780	1	NRP2	2	206610543	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09	8343709	206610543	36588830	6	46826										
INPP4B	0	genome.wustl.edu	37	chr4	143067052	143067052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ccttttctccatcattgttgCcgccactgccttcactgcca	5	17	3	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	4	143067052	143067052	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.1661	p.G554D	0.216	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	99	0	0	169	21	11.05	-	-	-	T	143067052	C	T	143067052	3	4	524	1	0	0	0	0	1	0	0	0	7807	739	26	4	1149	4	INPP4B	4	143067052	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		143067052	48087224	7	46827										
AP3B1	0	genome.wustl.edu	37	chr5	77385315	77385315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	aagtgcaactggagtggataCtgggttaactgtaagaaaag	13	4	0	1			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	5	77385315	77385315	C	A	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.2479	p.V827L	0.982	pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	149	0	0	104	68	39.31	-	-	-	A	77385315	C	A	77385315	3	1	524	1	0	0	0	0	1	0	0	0	745	565	20	4	829	4	AP3B1	5	77385315	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		77385315	103529945	8	46828										
RNF44	0	genome.wustl.edu	37	chr5	175957174	175957174	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ctgcaggcggtatctctgggTgctcagtctccgtggcatca	13	12	4	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-11A-12D-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	aa3710e7-1b27-4a66-996d-d716171d7f6d	5	175957174	175957174	T	G	SNP	RNF44	ENST00000274811	human	ensembl	69_37n	-1	known	missense	c.835	p.T279P	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF44	HGNC	ENSG00000146083	25	0	0	21	6	22.22	-	-	-	G	175957174	T	G	175957174	3	3	524	1	0	0	0	0	1	0	0	0	13582	1696	59	5	483	5	RNF44	5	175957174	Missense_Mutation	SNP	T	TCGA-BH-A0DQ-01A-11D-A099-09	98571859	175957174	4958086	9	46829										
CDYL	0	genome.wustl.edu	37	chr6	4892446	4892446	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	cgtcgagcagggtcaggaggAcacagtggcacccgaagtgg	17	10	1	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	6	4892446	4892446	A	G	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	missense	c.686	p.D229G	1.000	NULL	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	133	0	0	52	39	42.39	-	-	-	G	4892446	A	G	4892446	3	3	524	1	0	0	0	0	1	0	0	0	3214	275	10	5	530	5	CDYL	6	4892446	Missense_Mutation	SNP	A	TCGA-BH-A0DQ-01A-11D-A099-09		4892446	166222621	10	46830										
NOD1	0	genome.wustl.edu	37	chr7	30491714	30491714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gtgtgttccgctgcaccaggCtgctgggctgcatcctgttc	13	13	0	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	7	30491714	30491714	C	T	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.1319	p.S440N	1.000	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	33	0	0	29	15	34.09	-	-	-	T	30491714	C	T	30491714	3	4	524	1	0	0	0	0	1	0	0	0	10588	797	28	4	1578	4	NOD1	7	30491714	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		30491714	128646949	11	46831										
CSMD3	0	genome.wustl.edu	37	chr8	113564901	113564901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	atggaaaaggatagccaggaGataagattcttcctgatgat	11	5	1	4			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	8	113564901	113564901	G	C	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.4283	p.S1428C	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	95	0	0	80	45	36	-	-	-	C	113564901	G	C	113564901	3	2	524	1	0	0	0	0	1	0	0	0	3978	942	33	2	7024	2	CSMD3	8	113564901	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09		113564901	32799121	12	46832										
KIAA0913	0	genome.wustl.edu	37	chr10	75560085	75560085	+	Frame_Shift_Del	DEL	A	A	-													0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	catccagcatccacgtttccAgccatccaaggtgcctcact							TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	10	75560085	75560085	A	-	DEL	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	frame_shift_del	c.4881	p.A1628fs	0.990	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	53	0	0	38	18	30	-	-	-	-	75560085	A	-	75560085	7	5	524	1	0	1	0	1	0	0	0	0	8252	175	7	0	4971	0	KIAA0913	10	75560085	Frame_Shift_Del	DEL	A	TCGA-BH-A0DQ-01A-11D-A099-09		75560085	59974662	13	46833										
ACSL5	0	genome.wustl.edu	37	chr10	114168281	114168281	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gtacatattgtcaacaagggTaaaattttgctgttacatta	7	5	1	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	10	114168281	114168281	T	C	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	splice_site	c.700+2	e6+2	1.000	-	-	-	no_errors	ACSL5	HGNC	ENSG00000197142	100	0	0	116	43	26.88	-	-	-	C	114168281	T	C	114168281	5	2	524	1	0	0	0	0	0	0	1	0	180	1652	57	5	724	5	ACSL5	10	114168281	Splice_Site	SNP	T	TCGA-BH-A0DQ-01A-11D-A099-09	38608196	114168281	21366466	14	46834										
SBF2	0	genome.wustl.edu	37	chr11	9853808	9853808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	tgagatttgaaaagaccaacGactcccttcccatggaatcc	7	12	0	3			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	11	9853808	9853808	G	A	SNP	SBF2	ENST00000530741	human	ensembl	69_37n	-1	novel	missense	c.266	p.S89L	0.859	NULL	pfam_Myotub-related	-	no_start_codon:pseudogene:no_stop_codon	SBF2	HGNC	ENSG00000133812	126	0	0	112	50	30.67	-	-	-	A	9853808	G	A	9853808	3	1	524	1	0	0	0	0	1	0	0	0	13946	1045	37	1	1990	1	SBF2	11	9853808	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09		9853808	125152708	15	46835										
TECTA	0	genome.wustl.edu	37	chr11	121030932	121030933	+	Frame_Shift_Ins	INS	-	-	C													0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	tttctggtgattgacaccagINScccagacatccagatatact							TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	11	121030932	121030933	-	C	INS	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	frame_shift_ins	c.4778_4779	p.D1595fs	1.000:1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	73	0	0	51	35	40.7	-	-	-	C	121030933	-	C	121030932	7	5	524	1	0	1	1	0	0	0	0	0	15842	971	34	0	4832	0	TECTA	11	121030932	Frame_Shift_Ins	INS	-	TCGA-BH-A0DQ-01A-11D-A099-09	111177124	121030932	13975584	16	46836										
SLC24A6	0	genome.wustl.edu	37	chr12	113737727	113737727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	agaccagggagaagacgaggCtgagccccagggcgcctgcc	16	13	0	4			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	12	113737727	113737727	C	T	SNP	SLC24A6	ENST00000202831	human	ensembl	69_37n	-1	known	missense	c.1610	p.S537N	1.000	pfam_NaCa_Exmemb	pfam_NaCa_Exmemb	-	no_errors	SLC24A6	HGNC	ENSG00000089060	95	0	0	67	21	23.86	-	-	-	T	113737727	C	T	113737727	3	4	524	1	0	0	0	0	1	0	0	0	14559	797	28	4	148	4	SLC24A6	12	113737727	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		113737727	20114168	17	46837										
GTF2H3	0	genome.wustl.edu	37	chr12	124144342	124144342	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	tttgtttgtttgttttacagTgggtgtttcttcccgatcaa	9	6	2	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	12	124144342	124144342	T	A	SNP	GTF2H3	ENST00000543341	human	ensembl	69_37n	1	known	missense	c.685	p.W229R	1.000	pfam_TF_Tfb4,tigrfam_TF_Tfb4	pfam_TF_Tfb4,tigrfam_TF_Tfb4	-	no_errors	GTF2H3	HGNC	ENSG00000111358	154	0	0	72	51	41.13	-	-	-	A	124144342	T	A	124144342	3	1	524	1	0	0	0	0	1	0	0	0	6915	1710	59	5	727	5	GTF2H3	12	124144342	Missense_Mutation	SNP	T	TCGA-BH-A0DQ-01A-11D-A099-09	10406615	124144342	9707553	18	46838										
MINK1	0	genome.wustl.edu	37	chr17	4796018	4796018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gcgtccttccagcctctcacGggcacctcccccaggctggc	10	20	1	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	17	4796018	4796018	G	A	SNP	MINK1	ENST00000355280	human	ensembl	69_37n	1	known	missense	c.2266	p.G756R	0.107	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MINK1	HGNC	ENSG00000141503	38	0	0	19	4	17.39	-	-	-	A	4796018	G	A	4796018	3	1	524	1	0	0	0	0	1	0	0	0	9658	1116	39	1	2079	1	MINK1	17	4796018	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09		4796018	76399192	19	46839										
LAMA1	0	genome.wustl.edu	37	chr18	7040119	7040119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gggctcatcactggcactgcCcactgggttgcacccacagg	12	15	2	0			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	18	7040119	7040119	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.1378	p.G460S	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	149	0	0	201	55	21.48	-	-	-	T	7040119	C	T	7040119	3	4	524	1	0	0	0	0	1	0	0	0	8659	623	22	4	8065	4	LAMA1	18	7040119	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		7040119	71037129	20	46840										
MAP2K7	0	genome.wustl.edu	37	chr19	7974955	7974956	+	Frame_Shift_Ins	INS	-	-	TT													0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	ccatgtccccagcattgagaINSttgaccagaagctgcaggag							TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	19	7974955	7974956	-	TT	INS	MAP2K7	ENST00000545011	human	ensembl	69_37n	1	known	frame_shift_ins	c.274_275	p.D93fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984	52	0	0	15	8	34.78	-	-	-	TT	7974956	-	TT	7974955	7	5	524	1	0	1	1	0	0	0	0	0	9313	333	12	0	284	0	MAP2K7	19	7974955	Frame_Shift_Ins	INS	-	TCGA-BH-A0DQ-01A-11D-A099-09		7974955	51154028	21	46841										
ZNF460	0	genome.wustl.edu	37	chr19	57802202	57802202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gcaggccatggatcaagatgGgccatctgaaatgcaggaat	13	8	2	2			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	19	57802202	57802202	G	A	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.293	p.G98E	0.002	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	72	0	0	44	17	27.87	-	-	-	A	57802202	G	A	57802202	3	1	524	1	0	0	0	0	1	0	0	0	18020	1232	43	4	303	4	ZNF460	19	57802202	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09	49827247	57802202	1326781	22	46842										
WNK3	0	genome.wustl.edu	37	chrX	54335680	54335680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	tagtgtgcaagaactgcaacCcctttaaaatttgcctgcac	7	11	0	1			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	X	54335680	54335680	C	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.779	p.G260E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	144	0	0	96	36	27.27	-	-	-	T	54335680	C	T	54335680	3	4	524	1	0	0	0	0	1	0	0	0	17476	623	22	4	4707	4	WNK3	23	54335680	Missense_Mutation	SNP	C	TCGA-BH-A0DQ-01A-11D-A099-09		54335680	100934880	23	46843										
VSIG4	0	genome.wustl.edu	37	chrX	65244946	65244946	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	cacaaggagatgatgaggatGatggcaaagacaggcaggct	15	6	0	5			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	X	65244946	65244946	G	A	SNP	VSIG4	ENST00000427538	human	ensembl	69_37n	-1	known	missense	c.640	p.H214Y	0.862	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VSIG4	HGNC	ENSG00000155659	151	0	0	126	50	28.25	-	-	-	A	65244946	G	A	65244946	3	1	524	1	0	0	0	0	1	0	0	0	17322	1280	45	2	354	2	VSIG4	23	65244946	Missense_Mutation	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09	10909266	65244946	90025614	24	46844										
FAM127C	0	genome.wustl.edu	37	chrX	134156265	134156265	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.848714113012736	1.18796992481203	8.31578947368421	0.639676113360324	1	1	0	gggatcacccactgcagggcGggccccgtgaggcgggtgat	18	12	1	2			TCGA-BH-A0DQ-01A-11D-A099-09	TCGA-BH-A0DQ-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50da0300-124c-429e-8627-47b8ff640ea5	05825f2e-ce2f-45b6-a04a-a0c144120407	X	134156265	134156265	G	A	SNP	FAM127C	ENST00000391440	human	ensembl	69_37n	-1	known	silent	c.225	p.P75	0.394	NULL	NULL	-	no_errors	FAM127C	HGNC	ENSG00000212747	142	0	0	102	30	22.73	-	-	-	A	134156265	G	A	134156265	2	1	524	1	0	0	0	0	0	0	0	1	5473	1103	39	1		1	FAM127C	23	134156265	Silent	SNP	G	TCGA-BH-A0DQ-01A-11D-A099-09	68911319	134156265	21114295	25	46845										
ZNF644	0	genome.wustl.edu	37	chr1	91405737	91405737	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgactcagaatcactctcttCacatttcttttttaaggtat	4	9	5	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	91405737	91405737	C	A	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	nonsense	c.1174	p.E392*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	136	0	0	147	83	36.09	-	-	-	A	91405737	C	A	91405737	4	1	525	1	0	0	0	0	0	1	0	0	18156	835	29	2	2825	2	ZNF644	1	91405737	Nonsense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09		91405737	157844884	1	46846										
PIK3C2B	0	genome.wustl.edu	37	chr1	204394861	204394861	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tcagggtcatttccatcctgGagcagttgctacaatagaat	9	9	2	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	204394861	204394861	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.4596	p.L1532	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	78	0	0	175	43	19.72	-	-	-	A	204394861	G	A	204394861	2	1	525	1	0	0	0	0	0	0	0	1	11984	1161	41	2		2	PIK3C2B	1	204394861	Silent	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09	112989124	204394861	44855760	2	46847										
MIA3	0	genome.wustl.edu	37	chr1	222803199	222803199	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggagaactctcaaaagaggaCcatgagaacacagagaagta	11	7	1	4			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	222803199	222803199	C	T	SNP	MIA3	ENST00000354906	human	ensembl	69_37n	1	known	missense	c.1384	p.P462S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	MIA3	HGNC	ENSG00000154305	45	0	0	190	35	15.56	-	-	-	T	222803199	C	T	222803199	3	4	525	1	0	0	0	0	1	0	0	0	9636	506	18	4	2651	4	MIA3	1	222803199	Missense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09	18408338	222803199	26447422	3	46848										
GGPS1	0	genome.wustl.edu	37	chr1	235505826	235505826	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgacagagggaaagttctcAtttcctactattcatgctat	7	9	2	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	235505826	235505826	A	G	SNP	GGPS1	ENST00000282841	human	ensembl	69_37n	1	known	silent	c.642	p.S214	0.976	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904	106	0	0	358	46	11.39	-	-	-	G	235505826	A	G	235505826	2	3	525	1	0	0	0	0	0	0	0	1	6412	204	8	5		5	GGPS1	1	235505826	Silent	SNP	A	TCGA-BH-A0DS-01A-11W-A071-09	12702627	235505826	13744795	4	46849										
TRPM8	0	genome.wustl.edu	37	chr2	234878392	234878392	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tcccgagacaccaagaactgGaagattatcctgtgtctgtt	9	10	1	3			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	2	234878392	234878392	G	A	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	nonsense	c.2079	p.W693*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	42	0	0	55	36	39.56	-	-	-	A	234878392	G	A	234878392	4	1	525	1	0	0	0	0	0	1	0	0	16688	1183	41	2	2137	2	TRPM8	2	234878392	Nonsense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		234878392	8320981	5	46850										
IQCF1	0	genome.wustl.edu	37	chr3	51929268	51929268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ggctgcgtgcaacagtgcccGacgcaccagggtgccccgcc	14	17	0	0			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	51929268	51929268	G	A	SNP	IQCF1	ENST00000310914	human	ensembl	69_37n	-1	known	missense	c.256	p.R86W	0.067	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF1	HGNC	ENSG00000173389	95	0	0	83	67	44.67	-	-	-	A	51929268	G	A	51929268	3	1	525	1	0	0	0	0	1	0	0	0	7861	1057	37	1	365	1	IQCF1	3	51929268	Missense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		51929268	146093162	6	46851										
DNAH1	0	genome.wustl.edu	37	chr3	52417430	52417430	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgaatccttcctggaagataTcaacaacgtcctaaactctg	6	12	2	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	52417430	52417430	T	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.7970	p.I2657N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	18	0	0	13	19	59.38	-	-	-	A	52417430	T	A	52417430	3	1	525	1	0	0	0	0	1	0	0	0	4633	1435	50	5	8168	5	DNAH1	3	52417430	Missense_Mutation	SNP	T	TCGA-BH-A0DS-01A-11W-A071-09	488162	52417430	145605000	7	46852										
CORIN	0	genome.wustl.edu	37	chr4	47839941	47839941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctctgcggcagcgctcttccGgagcgagggcaggagactgt	16	12	2	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	4	47839941	47839941	G	A	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.26	p.P9L	0.004	pirsf_Peptidase_S1A_corin	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	56	0	0	48	22	31.43	-	-	-	A	47839941	G	A	47839941	3	1	525	1	0	0	0	0	1	0	0	0	3782	1116	39	1	3190	1	CORIN	4	47839941	Missense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		47839941	143314335	8	46853										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043672	26043672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	agcctcgcccgcgatgcgctCgaagatgtcgttgacgaagg	14	12	0	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	26043672	26043672	C	T	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	83	0	0	80	47	37.01	-	-	-	T	26043672	C	T	26043672	3	4	525	1	0	0	0	0	1	0	0	0	7192	893	31	1	170	1	HIST1H2BB	6	26043672	Missense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09		26043672	145071395	9	46854										
EHMT2	0	genome.wustl.edu	37	chr6	31864886	31864887	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	ctacctcttcctctgtggggINSccccccccttccgcggcctc							TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	31864886	31864887	-	C	INS	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	frame_shift_ins	c.94_93	p.P31fs	0.000:0.001	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	13	0	0	17	4	19.05	-	-	-	C	31864887	-	C	31864886	7	5	525	1	0	1	1	0	0	0	0	0	5019	1218	42	0		0	EHMT2	6	31864886	Frame_Shift_Ins	INS	-	TCGA-BH-A0DS-01A-11W-A071-09	5821214	31864886	139250181	10	46855										
ESR1	0	genome.wustl.edu	37	chr6	152201810	152201810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gacataacgactatatgtgtCcagccaccaaccagtgcacc	7	14	0	0			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	152201810	152201810	C	T	SNP	ESR1	ENST00000206249	human	ensembl	69_37n	1	known	missense	c.664	p.P222S	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	68	0	0	83	44	34.65	-	-	-	T	152201810	C	T	152201810	3	4	525	1	0	0	0	0	1	0	0	0	5293	855	30	2	674	2	ESR1	6	152201810	Missense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09	120336924	152201810	18913257	11	46856										
CREB5	0	genome.wustl.edu	37	chr7	28848830	28848830	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccagcaacacaacagatgcaGccaacccagacaatacagcc	6	16	0	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	7	28848830	28848830	G	A	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	silent	c.1053	p.Q351	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	55	0	0	66	10	13.16	-	-	-	A	28848830	G	A	28848830	2	1	525	1	0	0	0	0	0	0	0	1	3890	962	34	4		4	CREB5	7	28848830	Silent	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		28848830	130289833	12	46857										
STAU2	0	genome.wustl.edu	37	chr8	74585370	74585370	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	gtacatgccccgaaagttgtAattagctctataatttggga							TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	74585370	74585370	A	-	DEL	STAU2	ENST00000524300	human	ensembl	69_37n	-1	known	frame_shift_del	c.382	p.Y128fs	1.000	smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU2	HGNC	ENSG00000040341	143	0	0	446	134	22.87	-	-	-	-	74585370	A	-	74585370	7	5	525	1	0	1	0	1	0	0	0	0	15364	362	13	0	1494	0	STAU2	8	74585370	Frame_Shift_Del	DEL	A	TCGA-BH-A0DS-01A-11W-A071-09		74585370	71778652	13	46858										
RIMS2	0	genome.wustl.edu	37	chr8	104933950	104933950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atcgtccttctatttctgttAcctctcccatgagtcctgga	6	13	3	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	104933950	104933950	A	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2134	p.T712A	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	100	0	0	321	66	17.05	-	-	-	G	104933950	A	G	104933950	3	3	525	1	0	0	0	0	1	0	0	0	13454	391	14	5	2298	5	RIMS2	8	104933950	Missense_Mutation	SNP	A	TCGA-BH-A0DS-01A-11W-A071-09	30348580	104933950	41430072	14	46859										
ROR2	0	genome.wustl.edu	37	chr9	94493291	94493292	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	NA	0	1	1	0	gggttccggcagtaggcgtgINScccccctccaagctcaggga							TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	94493291	94493292	-	C	INS	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1084_1083	p.H361fs	1.000:0.825	pirsf_Tyr_kinase_rcpt_ROR,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	26	0	0	26	3	10.34	-	-	-	C	94493292	-	C	94493291	7	5	525	1	0	1	1	0	0	0	0	0	13613	1319	46	0	1759	0	ROR2	9	94493291	Frame_Shift_Ins	INS	-	TCGA-BH-A0DS-01A-11W-A071-09		94493291	46720140	15	46860										
PTCH1	0	genome.wustl.edu	37	chr9	98218641	98218641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cacggcactgagcttgattcCgatgaggcccatcatgccga	11	13	1	3			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	98218641	98218641	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3223	p.G1075R	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	21	0	0	21	12	36.36	-	-	-	T	98218641	C	T	98218641	3	4	525	1	0	0	0	0	1	0	0	0	12810	661	23	1	1140	1	PTCH1	9	98218641	Missense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09	3725350	98218641	42994790	16	46861										
DCLRE1C	0	genome.wustl.edu	37	chr10	14961809	14961809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctttggctccgtactttgggAagaccggcataaaggcttta	11	9	0	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	14961809	14961809	A	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.1084	p.S362P	0.915	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	99	0	0	121	27	18.24	-	-	-	G	14961809	A	G	14961809	3	3	525	1	0	0	0	0	1	0	0	0	4327	246	9	5	1002	5	DCLRE1C	10	14961809	Missense_Mutation	SNP	A	TCGA-BH-A0DS-01A-11W-A071-09		14961809	120572938	17	46862										
LRIT1	0	genome.wustl.edu	37	chr10	85991725	85991725	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcctgccccctttgactccAaaggcctgaaagtccacact	6	17	0	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	85991725	85991725	A	G	SNP	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	silent	c.1830	p.F610	0.003	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	10	0	0	14	7	33.33	-	-	-	G	85991725	A	G	85991725	2	3	525	1	0	0	0	0	0	0	0	1	9013	127	5	5		5	LRIT1	10	85991725	Silent	SNP	A	TCGA-BH-A0DS-01A-11W-A071-09	71029916	85991725	49543022	18	46863										
NCKAP1L	0	genome.wustl.edu	37	chr12	54925050	54925050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taactctgttccagagatgcGggccttggcagaactcctgg	12	11	1	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	54925050	54925050	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.2513	p.R838Q	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	163	0	0	219	29	11.69	-	-	-	A	54925050	G	A	54925050	3	1	525	1	0	0	0	0	1	0	0	0	10294	1116	39	1	2603	1	NCKAP1L	12	54925050	Missense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		54925050	78926845	19	46864										
SH2B3	0	genome.wustl.edu	37	chr12	111885304	111885304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgcggcagagcgagacgcggCgtggggaatacgtgctcact	17	10	1	2			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	111885304	111885304	C	T	SNP	SH2B3	ENST00000538307	human	ensembl	69_37n	1	known	missense	c.586	p.R196C	0.984	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252	53	0	0	51	25	32.89	-	-	-	T	111885304	C	T	111885304	3	4	525	1	0	0	0	0	1	0	0	0	14317	768	27	1	1210	1	SH2B3	12	111885304	Missense_Mutation	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09	56960254	111885304	21966591	20	46865										
TMEM132D	0	genome.wustl.edu	37	chr12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	NA	0	1	1	0	ctcctcccggcaaccaccgtINSgggggggctgaaccagctgg							TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	130184704	130184705	-	G	INS	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	17	0	0	16	2	11.11	-	-	-	G	130184705	-	G	130184704	7	5	525	1	0	1	1	0	0	0	0	0	16142	1696	59	0	2712	0	TMEM132D	12	130184704	Frame_Shift_Ins	INS	-	TCGA-BH-A0DS-01A-11W-A071-09	18299400	130184704	3667191	21	46866										
TTLL5	0	genome.wustl.edu	37	chr14	76232419	76232419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atttagtgattacccaaccaGctgaaatgaatgttaaaact	6	7	0	3			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	76232419	76232419	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	missense	c.1723	p.A575T	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	90	0	0	91	85	48.3	-	-	-	A	76232419	G	A	76232419	3	1	525	1	0	0	0	0	1	0	0	0	16827	971	34	4	1797	4	TTLL5	14	76232419	Missense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		76232419	31117121	22	46867										
SMCHD1	0	genome.wustl.edu	37	chr18	2722567	2722567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttctggatcttccttttcgtGttggagttccatttaatatc	7	8	2	0			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	18	2722567	2722567	G	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.2509	p.V837F	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	125	0	0	179	30	14.29	-	-	-	T	2722567	G	T	2722567	3	4	525	1	0	0	0	0	1	0	0	0	14877	1377	48	4	2587	4	SMCHD1	18	2722567	Missense_Mutation	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		2722567	75354681	23	46868										
MYH14	0	genome.wustl.edu	37	chr19	50753926	50753926	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggatcaggccgacttcagtgTtctccactacgcgggcaagg	13	12	3	0			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	50753926	50753926	T	C	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.1811	p.V604A	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	13	0	0	24	10	29.41	-	-	-	C	50753926	T	C	50753926	3	2	525	1	0	0	0	0	1	0	0	0	10105	1725	60	5	1865	5	MYH14	19	50753926	Missense_Mutation	SNP	T	TCGA-BH-A0DS-01A-11W-A071-09		50753926	8375057	24	46869										
HNF4A	0	genome.wustl.edu	37	chr20	43031282	43031282	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ggtggacagttctccacaggGaggtaggggaaaagaggagg	19	5	1	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	20	43031282	43031282	G	A	SNP	HNF4A	ENST00000372920	human	ensembl	69_37n	1	known	silent	c.204	p.G68	0.000	NULL	NULL	-	no_errors	HNF4A	HGNC	ENSG00000101076	11	0	0	17	9	34.62	-	-	-	A	43031282	G	A	43031282	2	1	525	1	0	0	0	0	0	0	0	1	7304	1189	41	2		2	HNF4A	20	43031282	Silent	SNP	G	TCGA-BH-A0DS-01A-11W-A071-09		43031282	19994238	25	46870										
AKAP14	0	genome.wustl.edu	37	chrX	119037537	119037537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aagggtcttaaacaaattgaCgaatatttttcggtaagtta	8	4	1	1			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	X	119037537	119037537	C	T	SNP	AKAP14	ENST00000371431	human	ensembl	69_37n	1	known	silent	c.249	p.D83	0.000	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471	36	0	0	82	23	21.9	-	-	-	T	119037537	C	T	119037537	2	4	525	1	0	0	0	0	0	0	0	1	450	535	19	1		1	AKAP14	23	119037537	Silent	SNP	C	TCGA-BH-A0DS-01A-11W-A071-09		119037537	36233023	26	46871										
SH2D5	0	genome.wustl.edu	37	chr1	21048381	21048381	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	ggcccacagtcctgctcctcGtaggtggggttcaggcggcc	15	14	1	0			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	1	21048381	21048381	G	A	SNP	SH2D5	ENST00000444387	human	ensembl	69_37n	-1	known	silent	c.1176	p.Y392	0.571	pfscan_SH2	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SH2D5	HGNC	ENSG00000189410	29	0	0	25	4	13.79	-	-	-	A	21048381	G	A	21048381	2	1	526	1	0	0	0	0	0	0	0	1	14325	1140	40	1		1	SH2D5	1	21048381	Silent	SNP	G	TCGA-BH-A0DT-01A-21D-A12B-09		21048381	228202240	1	46872										
NOL10	0	genome.wustl.edu	37	chr2	10729809	10729809	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	ctaaattcttcactctcttcAtctacttggaagtcagggtt	6	10	6	0			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	2	10729809	10729809	A	T	SNP	NOL10	ENST00000381685	human	ensembl	69_37n	-1	known	missense	c.1491	p.D497E	0.982	pfam_NUC153	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	296	0	0	184	64	25.6	-	-	-	T	10729809	A	T	10729809	3	4	526	1	0	0	0	0	1	0	0	0	10592	214	8	5	591	5	NOL10	2	10729809	Missense_Mutation	SNP	A	TCGA-BH-A0DT-01A-21D-A12B-09		10729809	232469564	2	46873										
MTA3	0	genome.wustl.edu	37	chr2	42909567	42909567	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	gctatggatacattgtatagAcacagctatgatttgagcag	10	6	0	3			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	2	42909567	42909567	A	C	SNP	MTA3	ENST00000405094	human	ensembl	69_37n	1	known	missense	c.729	p.R243S	0.960	pfscan_ELM2_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	375	0	0	216	72	25	-	-	-	C	42909567	A	C	42909567	3	2	526	1	0	0	0	0	1	0	0	0	9982	272	10	5	763	5	MTA3	2	42909567	Missense_Mutation	SNP	A	TCGA-BH-A0DT-01A-21D-A12B-09	32179758	42909567	200289806	3	46874										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	220	0	0	155	60	27.91	-	-	-	A	178936091	G	A	178936091	3	1	526	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0DT-01A-21D-A12B-09		178936091	19086339	4	46875										
BMPR1B	0	genome.wustl.edu	37	chr4	96045009	96045012	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	ggctttacttatatctgtgaCtgtctgtagtttgctcttgg							TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	4	96045009	96045012	CTGT	-	DEL	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	frame_shift_del	c.488_491	p.C165fs	0.999:0.839:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	557	0	0	244	131	34.38	-	-	-	-	96045012	CTGT	-	96045009	7	5	526	1	0	1	0	1	0	0	0	0	1475	565	20	0	412	0	BMPR1B	4	96045009	Frame_Shift_Del	DEL	CTGT	TCGA-BH-A0DT-01A-21D-A12B-09		96045009	95109267	5	46876										
NUP155	0	genome.wustl.edu	37	chr5	37314414	37314414	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	attgcctgaagtgaaatcttTtcacttagttgagcctctaa	7	8	3	3			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	37314414	37314414	T	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2322	p.E774D	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	144	0	0	92	34	26.98	-	-	-	G	37314414	T	G	37314414	3	3	526	1	0	0	0	0	1	0	0	0	10829	1838	64	5	1909	5	NUP155	5	37314414	Missense_Mutation	SNP	T	TCGA-BH-A0DT-01A-21D-A12B-09		37314414	143600846	6	46877										
MAP3K1	0	genome.wustl.edu	37	chr5	56160697	56160700	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	cttactgcagcagatagggcCtaactctttcctgattggag							TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTAA	CTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	56160697	56160700	CTAA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.971_974	p.N325fs	1.000:1.000:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	286	0	0	210	33	13.47	-	-	-	-	56160700	CTAA	-	56160697	7	5	526	1	0	1	0	1	0	0	0	0	9314	681	24	0	985	0	MAP3K1	5	56160697	Frame_Shift_Del	DEL	CTAA	TCGA-BH-A0DT-01A-21D-A12B-09	18846283	56160697	124754563	7	46878										
MAP3K1	0	genome.wustl.edu	37	chr5	56161690	56161691	+	Frame_Shift_Ins	INS	-	-	T													0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	cagaaatatcacagtaggcgINStagctcaaggatcaaagctc							TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	56161690	56161691	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1187_1188	p.S397fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	325	0	0	198	69	25.84	-	-	-	T	56161691	-	T	56161690	7	5	526	1	0	1	1	0	0	0	0	0	9314	1145	40	0	1209	0	MAP3K1	5	56161690	Frame_Shift_Ins	INS	-	TCGA-BH-A0DT-01A-21D-A12B-09	993	56161690	124753570	8	46879										
RNF180	0	genome.wustl.edu	37	chr5	63510190	63510190	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	caggagcatgccggaggcctCagaccaggaagagcacctct	13	13	2	2			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	63510190	63510190	C	T	SNP	RNF180	ENST00000389100	human	ensembl	69_37n	1	known	missense	c.1037	p.S346L	0.003	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197	138	0	0	95	29	23.39	-	-	-	T	63510190	C	T	63510190	3	4	526	1	0	0	0	0	1	0	0	0	13550	838	29	2	1047	2	RNF180	5	63510190	Missense_Mutation	SNP	C	TCGA-BH-A0DT-01A-21D-A12B-09	7348500	63510190	117405070	9	46880										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	214	0	0	151	36	19.15	-	-	-	-	8111434	CA	-	8111433	8	5	526	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-BH-A0DT-01A-21D-A12B-09		8111433	127423314	10	46881										
CACNA1C	0	genome.wustl.edu	37	chr12	2800326	2800326	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	cggggtcgaccgagtgaggaGgagctccaggacagcagggt	19	9	0	1			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	12	2800326	2800326	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.6591	p.E2197	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	62	0	0	33	6	15	-	-	-	A	2800326	G	A	2800326	2	1	526	1	0	0	0	0	0	0	0	1	2565	991	35	4		4	CACNA1C	12	2800326	Silent	SNP	G	TCGA-BH-A0DT-01A-21D-A12B-09		2800326	131051569	11	46882										
RPAP3	0	genome.wustl.edu	37	chr12	48091472	48091472	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	cagagactcatgggtactatCgtctttgtcaagctcatcaa	8	10	5	1			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	12	48091472	48091472	C	A	SNP	RPAP3	ENST00000005386	human	ensembl	69_37n	-1	known	missense	c.325	p.D109Y	0.981	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175	267	0	0	206	59	22.26	-	-	-	A	48091472	C	A	48091472	3	1	526	1	0	0	0	0	1	0	0	0	13629	884	31	3	1728	3	RPAP3	12	48091472	Missense_Mutation	SNP	C	TCGA-BH-A0DT-01A-21D-A12B-09	45291146	48091472	85760423	12	46883										
CBFB	0	genome.wustl.edu	37	chr16	67063313	67063313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	2	0.559980683787	2.10810810810811	NA	2.10810810810811	0.333333333333333	0.930327025915261	0	cggcctcagggcgggaagatGccgcgcgtcgtgcccgacca	16	15	1	1			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	16	67063313	67063313	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	pfam_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	13	0	0	10	7	41.18	-	-	-	A	67063313	G	A	67063313	3	1	526	1	0	0	0	0	1	0	0	0	2724	1319	46	4	5	4	CBFB	16	67063313	Missense_Mutation	SNP	G	TCGA-BH-A0DT-01A-21D-A12B-09		67063313	23291440	13	46884										
NUAK2	0	genome.wustl.edu	37	chr1	205274440	205274440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	1	0.596635775389339	3.39285714285714	NA	3.39285714285714	1	1	0	ccaggatgtagaggagaacaCccagggaccagctgtccacc	12	13	0	2			TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	1	205274440	205274440	C	A	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	missense	c.710	p.G237V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	81	0	0	80	11	12.09	-	-	-	A	205274440	C	A	205274440	3	1	527	1	0	0	0	0	1	0	0	0	10786	507	18	4	1184	4	NUAK2	1	205274440	Missense_Mutation	SNP	C	TCGA-BH-A0DV-01A-21D-A12Q-09		205274440	43976181	1	46885										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	1	0.596635775389339	3.39285714285714	NA	3.39285714285714	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	266	0	0	124	31	20	-	-	-	A	178936091	G	A	178936091	3	1	527	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0DV-01A-21D-A12Q-09		178936091	19086339	2	46886										
MAP3K1	0	genome.wustl.edu	37	chr5	56155725	56155726	+	Frame_Shift_Del	DEL	AG	AG	-													0.2	1	0.596635775389339	3.39285714285714	NA	3.39285714285714	1	1	0	ctccaggagtaaggagaaaaAgagtttccccagtgcctgta							TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	5	56155725	56155726	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.817_818	p.R273fs	0.959:0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	71	0	0	57	9	13.64	-	-	-	-	56155726	AG	-	56155725	7	5	527	1	0	1	0	1	0	0	0	0	9314	64	3	0	827	0	MAP3K1	5	56155725	Frame_Shift_Del	DEL	AG	TCGA-BH-A0DV-01A-21D-A12Q-09		56155725	124759535	3	46887										
RSAD1	0	genome.wustl.edu	37	chr17	48557115	48557115	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	1	0.596635775389339	3.39285714285714	NA	3.39285714285714	1	1	0	acgctgctgcggctcagcggGgtgcaacggtgggtagtggg	20	9	1	0			TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	17	48557115	48557115	G	A	SNP	RSAD1	ENST00000258955	human	ensembl	69_37n	1	known	silent	c.261	p.G87	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	pfam_HemN_C_dom,pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	-	no_errors	RSAD1	HGNC	ENSG00000136444	57	0	0	50	11	18.03	-	-	-	A	48557115	G	A	48557115	2	1	527	1	0	0	0	0	0	0	0	1	13780	1219	43	4		4	RSAD1	17	48557115	Silent	SNP	G	TCGA-BH-A0DV-01A-21D-A12Q-09		48557115	32638095	4	46888										
SHANK1	0	genome.wustl.edu	37	chr19	51165616	51165616	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	1	0.596635775389339	3.39285714285714	NA	3.39285714285714	1	1	0	agccacggatgtcaaagaggCctgggtagaggggtccggaa	17	8	1	2			TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	19	51165616	51165616	C	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.6116	p.G2039V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	76	0	0	49	11	18.33	-	-	-	A	51165616	C	A	51165616	3	1	527	1	0	0	0	0	1	0	0	0	14353	739	26	4	397	4	SHANK1	19	51165616	Missense_Mutation	SNP	C	TCGA-BH-A0DV-01A-21D-A12Q-09		51165616	7963367	5	46889										
CROCC	0	genome.wustl.edu	37	chr1	17273343	17273343	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gggaagagcaggaacggctaGaggagctgcggttggagcag	20	6	0	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	17273343	17273343	G	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.2371	p.E791Q	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	65	0	0	38	7	15.56	-	-	-	C	17273343	G	C	17273343	3	2	528	1	0	0	0	0	1	0	0	0	3923	943	33	2	2437	2	CROCC	1	17273343	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		17273343	231977278	1	46890										
DHDDS	0	genome.wustl.edu	37	chr1	26784375	26784375	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	acttctggagaagtgcggctGagtgacttcttgctatggca	13	8	2	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	26784375	26784375	G	A	SNP	DHDDS	ENST00000416052	human	ensembl	69_37n	1	putative	missense	c.265	p.E89K	1.000	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHDDS	HGNC	ENSG00000117682	403	0	0	216	60	21.66	-	-	-	A	26784375	G	A	26784375	3	1	528	1	0	0	0	0	1	0	0	0	4514	1277	45	2	658	2	DHDDS	1	26784375	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	9511032	26784375	222466246	2	46891										
CSF3R	0	genome.wustl.edu	37	chr1	36933504	36933504	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	catgaggtggatgtgatacaGactggcgggctccaggccat	15	9	0	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	36933504	36933504	G	C	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.1783	p.L595V	0.057	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	217	1	0.46	120	24	16.67	-	-	-	C	36933504	G	C	36933504	3	2	528	1	0	0	0	0	1	0	0	0	3969	933	33	2	933	2	CSF3R	1	36933504	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	10149129	36933504	212317117	3	46892										
WDR63	0	genome.wustl.edu	37	chr1	85560164	85560164	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tttcttttgaagacagagttCacttttctggtaaattattg	7	5	3	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	85560164	85560164	C	A	SNP	WDR63	ENST00000294664	human	ensembl	69_37n	1	known	missense	c.1099	p.H367N	0.072	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643	396	0	0	167	57	25.45	-	-	-	A	85560164	C	A	85560164	3	1	528	1	0	0	0	0	1	0	0	0	17411	826	29	2	1133	2	WDR63	1	85560164	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	48626660	85560164	163690457	4	46893										
SCAMP3	0	genome.wustl.edu	37	chr1	155228722	155228722	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aactggacaaaaagaaggtaGagggggccaattgttctgtc	13	6	1	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	155228722	155228722	G	C	SNP	SCAMP3	ENST00000302631	human	ensembl	69_37n	-1	known	missense	c.412	p.L138V	0.864	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP3	HGNC	ENSG00000116521	103	0	0	80	20	20	-	-	-	C	155228722	G	C	155228722	3	2	528	1	0	0	0	0	1	0	0	0	13959	933	33	2	651	2	SCAMP3	1	155228722	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	69668558	155228722	94021899	5	46894										
KIRREL	0	genome.wustl.edu	37	chr1	158058164	158058164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aacccacaaccacagacattGgctctgatgtgacccttacc	6	15	1	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	158058164	158058164	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.964	p.G322S	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	249	0	0	152	29	16.02	-	-	-	A	158058164	G	A	158058164	3	1	528	1	0	0	0	0	1	0	0	0	8377	1348	47	4	994	4	KIRREL	1	158058164	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	2829442	158058164	91192457	6	46895										
NUCKS1	0	genome.wustl.edu	37	chr1	205689755	205689755	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ttgttggcgcacatttttatGatcttctttttcatcttcac	5	9	5	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	1	205689755	205689755	G	A	SNP	NUCKS1	ENST00000367142	human	ensembl	69_37n	-1	known	missense	c.256	p.H86Y	1.000	NULL	NULL	-	no_errors	NUCKS1	HGNC	ENSG00000069275	398	0	0	211	92	30.36	-	-	-	A	205689755	G	A	205689755	3	1	528	1	0	0	0	0	1	0	0	0	10793	1290	45	2	487	2	NUCKS1	1	205689755	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	47631591	205689755	43560866	7	46896										
EPAS1	0	genome.wustl.edu	37	chr2	46574149	46574149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ctcccatctggacaaggcctCcatcatgcgactggcaatca	8	15	3	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	46574149	46574149	C	T	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	missense	c.164	p.S55F	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,prints_Nuc_translocat,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	146	0	0	73	17	18.89	-	-	-	T	46574149	C	T	46574149	3	4	528	1	0	0	0	0	1	0	0	0	5187	855	30	2	170	2	EPAS1	2	46574149	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		46574149	196625224	8	46897										
NRXN1	0	genome.wustl.edu	37	chr2	51254720	51254720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ccaccacggagcacacacctCcgttgaggcacaccccgccc	8	21	0	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	51254720	51254720	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.692	p.G231E	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	20	0	0	15	9	37.5	-	-	-	T	51254720	C	T	51254720	3	4	528	1	0	0	0	0	1	0	0	0	10738	855	30	2	4306	2	NRXN1	2	51254720	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	4680571	51254720	191944653	9	46898										
IL18R1	0	genome.wustl.edu	37	chr2	102988423	102988423	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tattccatagaaattatactCagaaatggaaattaaatgtc	5	5	1	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	102988423	102988423	C	G	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	1	known	missense	c.313	p.Q105E	0.000	smart_Ig_sub,prints_IL1_rcpt_I/II	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	32	0	0	38	14	26.92	-	-	-	G	102988423	C	G	102988423	3	3	528	1	0	0	0	0	1	0	0	0	7701	827	29	2	323	2	IL18R1	2	102988423	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	51733703	102988423	140210950	10	46899										
DPP4	0	genome.wustl.edu	37	chr2	162890159	162890159	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ttacagttggattcacagctCctgcctaggaaaaaataatc	7	9	1	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	162890159	162890159	C	G	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.779	p.G260A	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	140	0	0	98	28	22.22	-	-	-	G	162890159	C	G	162890159	3	3	528	1	0	0	0	0	1	0	0	0	4764	855	30	2	1589	2	DPP4	2	162890159	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	59901736	162890159	80309214	11	46900										
TTN	0	genome.wustl.edu	37	chr2	179471955	179471955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gcctgttatttcacttcctcCatcatcttctggatcagacc	5	14	5	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	179471955	179471955	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.45670	p.G15224R	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	278	0	0	165	43	20.67	-	-	-	T	179471955	C	T	179471955	3	4	528	1	0	0	0	0	1	0	0	0	16832	603	21	4	54659	4	TTN	2	179471955	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	16581796	179471955	63727418	12	46901										
TTN	0	genome.wustl.edu	37	chr2	179615735	179615735	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	agtctggaaaatttcttcatCaacaatagtttgaaagcttg	7	6	4	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	179615735	179615735	C	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.11392	p.D3798H	0.800	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	122	0	0	99	20	16.81	-	-	-	G	179615735	C	G	179615735	3	3	528	1	0	0	0	0	1	0	0	0	16832	826	29	2	98905	2	TTN	2	179615735	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	143780	179615735	63583638	13	46902										
CYP20A1	0	genome.wustl.edu	37	chr2	204116801	204116801	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tgaaaatggtgtgactgattCtctgaagagtaactttgccc	10	7	1	5			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	2	204116801	204116801	C	T	SNP	CYP20A1	ENST00000356079	human	ensembl	69_37n	1	known	missense	c.401	p.S134F	0.903	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004	247	0	0	131	28	17.61	-	-	-	T	204116801	C	T	204116801	3	4	528	1	0	0	0	0	1	0	0	0	4183	913	32	2	415	2	CYP20A1	2	204116801	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	24501066	204116801	39082572	14	46903										
SCN11A	0	genome.wustl.edu	37	chr3	38962717	38962717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gaccagcttcttcacagagcGtagcaaggcccccacgatga	10	14	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	38962717	38962717	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.742	p.R248C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	106	0	0	72	13	15.29	-	-	-	A	38962717	G	A	38962717	3	1	528	1	0	0	0	0	1	0	0	0	14001	1145	40	1	4717	1	SCN11A	3	38962717	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		38962717	159059713	15	46904										
ZNF621	0	genome.wustl.edu	37	chr3	40573701	40573701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aaatctgatacttcgaggtgGaatgaagttctatgaatgta	10	4	2	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	40573701	40573701	G	A	SNP	ZNF621	ENST00000339296	human	ensembl	69_37n	1	known	missense	c.440	p.G147E	0.998	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF621	HGNC	ENSG00000172888	105	0	0	76	13	14.61	-	-	-	A	40573701	G	A	40573701	3	1	528	1	0	0	0	0	1	0	0	0	18141	1174	41	2	454	2	ZNF621	3	40573701	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	1610984	40573701	157448729	16	46905										
ZNF445	0	genome.wustl.edu	37	chr3	44489889	44489889	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tcttgtagtcatagtggtgtGaactcattctgaagtgtttg	11	5	4	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	44489889	44489889	G	A	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.1274	p.S425L	0.997	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	295	0	0	158	22	12.22	-	-	-	A	44489889	G	A	44489889	3	1	528	1	0	0	0	0	1	0	0	0	18014	1294	45	2	1825	2	ZNF445	3	44489889	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	3916188	44489889	153532541	17	46906										
KIF15	0	genome.wustl.edu	37	chr3	44893829	44893829	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aggaaaatgtcaggcttgctGaggtaaacctaaaaattatt	9	5	1	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	44893829	44893829	G	A	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	missense	c.4102	p.E1368K	0.989	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	146	1	0.68	99	19	16.1	-	-	-	A	44893829	G	A	44893829	3	1	528	1	0	0	0	0	1	0	0	0	8329	1291	45	2	4236	2	KIF15	3	44893829	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	403940	44893829	153128601	18	46907										
DNAH1	0	genome.wustl.edu	37	chr3	52396484	52396484	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	atcaccatgaacccgggctaCgctggccgcacggagctgcc	12	16	1	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	52396484	52396484	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.5061	p.Y1687	0.421	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	118	0	0	53	19	26.39	-	-	-	T	52396484	C	T	52396484	2	4	528	1	0	0	0	0	0	0	0	1	4633	547	19	1		1	DNAH1	3	52396484	Silent	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	7502655	52396484	145625946	19	46908										
RUVBL1	0	genome.wustl.edu	37	chr3	127816231	127816231	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gtgcaggtaggtgaagcactCaatgtccagcatgtggacct	13	9	1	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	127816231	127816231	C	T	SNP	RUVBL1	ENST00000322623	human	ensembl	69_37n	-1	known	missense	c.928	p.E310K	1.000	pfam_TIP49_C,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792	321	1	0.31	162	30	15.62	-	-	-	T	127816231	C	T	127816231	3	4	528	1	0	0	0	0	1	0	0	0	13838	835	29	2	458	2	RUVBL1	3	127816231	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	75419747	127816231	70206199	20	46909										
TOPBP1	0	genome.wustl.edu	37	chr3	133335748	133335748	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ctgtttttttaattcttcatGagtctcctctatcgttataa	4	8	4	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	133335748	133335748	G	A	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.3781	p.H1261Y	0.000	pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	149	0	0	97	19	16.38	-	-	-	A	133335748	G	A	133335748	3	1	528	1	0	0	0	0	1	0	0	0	16465	1290	45	2	811	2	TOPBP1	3	133335748	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	5519517	133335748	64686682	21	46910										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	128	0	0	75	19	20.21	-	-	-	A	178936091	G	A	178936091	3	1	528	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	45600343	178936091	19086339	22	46911										
MAP3K13	0	genome.wustl.edu	37	chr3	185198193	185198193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	agacgacctgctgtcccagaCgccagagattcccattgaca	9	14	0	4			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	3	185198193	185198193	C	T	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	missense	c.2675	p.T892M	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	127	0	0	77	15	16.3	-	-	-	T	185198193	C	T	185198193	3	4	528	1	0	0	0	0	1	0	0	0	9318	536	19	1	2721	1	MAP3K13	3	185198193	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	6262102	185198193	12824237	23	46912										
TBC1D9	0	genome.wustl.edu	37	chr4	141598222	141598222	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ggcagccggaaaagtgcacgGtatctctcactctttgccct	10	13	3	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	4	141598222	141598222	G	T	SNP	TBC1D9	ENST00000442267	human	ensembl	69_37n	-1	known	nonsense	c.885	p.Y295*	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436	241	0	0	126	35	21.74	-	-	-	T	141598222	G	T	141598222	4	4	528	1	0	0	0	0	0	1	0	0	15722	1256	44	4	2979	4	TBC1D9	4	141598222	Nonsense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		141598222	49556054	24	46913										
FAT1	0	genome.wustl.edu	37	chr4	187519128	187519128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	taagaaaaatacacatacctCtgaccagtatataatcctct	3	10	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	4	187519128	187519128	C	G	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.12255	p.Q4085H	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	44	0	0	29	6	17.14	-	-	-	G	187519128	C	G	187519128	3	3	528	1	0	0	0	0	1	0	0	0	5735	912	32	2	1531	2	FAT1	4	187519128	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	45920906	187519128	3635148	25	46914										
PCDHA10	0	genome.wustl.edu	37	chr5	140236913	140236913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tgagctggtggtgaccgcgcGggacgggggctcgcctccgc	19	13	0	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	5	140236913	140236913	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1280	p.R427Q	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	200	0	0	89	53	37.32	-	-	-	A	140236913	G	A	140236913	3	1	528	1	0	0	0	0	1	0	0	0	11593	1116	39	1	1282	1	PCDHA10	5	140236913	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		140236913	40678347	26	46915										
PARK2	0	genome.wustl.edu	37	chr6	161969999	161969999	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	cacgccccccatctgcaggaCacactcctctgcaccatact	5	20	2	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	6	161969999	161969999	C	A	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	missense	c.970	p.V324F	0.623	smart_Znf_C6HC,pirsf_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	51	0	0	31	11	26.19	-	-	-	A	161969999	C	A	161969999	3	1	528	1	0	0	0	0	1	0	0	0	11522	478	17	4	443	4	PARK2	6	161969999	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		161969999	9145068	27	46916										
THBS2	0	genome.wustl.edu	37	chr6	169626349	169626349	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	accatccgtgtccctctggtCagtgttgtagacgtagggac	12	11	2	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	6	169626349	169626349	C	T	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	missense	c.2464	p.D822N	1.000	NULL	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	257	0	0	121	53	30.46	-	-	-	T	169626349	C	T	169626349	3	4	528	1	0	0	0	0	1	0	0	0	15949	826	29	2	1082	2	THBS2	6	169626349	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	7656350	169626349	1488718	28	46917										
ADRA1A	0	genome.wustl.edu	37	chr8	26623598	26623598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gaaccctttctccacggtggCatcataaaattcacatgctt	6	12	3	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	8	26623598	26623598	C	A	SNP	ADRA1A	ENST00000354550	human	ensembl	69_37n	-1	known	missense	c.1338	p.M446I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	210	0	0	102	19	15.7	-	-	-	A	26623598	C	A	26623598	3	1	528	1	0	0	0	0	1	0	0	0	334	710	25	4	221	4	ADRA1A	8	26623598	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		26623598	119740424	29	46918										
NXNL2	0	genome.wustl.edu	37	chr9	91159324	91159324	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aagaggtacaacgtcacagcCatccccaagcttgtgattgt	9	11	1	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	9	91159324	91159324	C	G	SNP	NXNL2	ENST00000375854	human	ensembl	69_37n	1	known	silent	c.333	p.A111	0.998	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	NXNL2	HGNC	ENSG00000130045	121	0	0	66	16	19.51	-	-	-	G	91159324	C	G	91159324	2	3	528	1	0	0	0	0	0	0	0	1	10862	581	21	4		4	NXNL2	9	91159324	Silent	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		91159324	50054107	30	46919										
GRIN3A	0	genome.wustl.edu	37	chr9	104499768	104499768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gcgaactaggggaggagaagGgcaaaagtggcagatcgccc	17	8	0	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	9	104499768	104499768	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.494	p.P165L	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	170	1	0.58	71	9	11.25	-	-	-	A	104499768	G	A	104499768	3	1	528	1	0	0	0	0	1	0	0	0	6834	1232	43	4	2889	4	GRIN3A	9	104499768	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	13340444	104499768	36713663	31	46920										
DDX31	0	genome.wustl.edu	37	chr9	135537878	135537878	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aaacagtgatgaagtcttaaTgcactgtctctcctcctggt	8	10	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	9	135537878	135537878	T	G	SNP	DDX31	ENST00000372159	human	ensembl	69_37n	-1	known	missense	c.595	p.I199L	0.001	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	478	0	0	257	46	15.18	-	-	-	G	135537878	T	G	135537878	3	3	528	1	0	0	0	0	1	0	0	0	4387	1464	51	5	2043	5	DDX31	9	135537878	Missense_Mutation	SNP	T	TCGA-BH-A0DX-01A-11D-A10Y-09	31038110	135537878	5675553	32	46921										
ANO5	0	genome.wustl.edu	37	chr11	22272388	22272388	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aaatagtacgtgtttggcttCaaaggtatgtatgcattgta	10	4	1	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	22272388	22272388	C	T	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.1115	p.S372L	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	474	0	0	276	77	21.75	-	-	-	T	22272388	C	T	22272388	3	4	528	1	0	0	0	0	1	0	0	0	699	838	29	2	1157	2	ANO5	11	22272388	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		22272388	112734128	33	46922										
EXT2	0	genome.wustl.edu	37	chr11	44228348	44228348	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	tttctctttttccagattctCtctggcccaaaatccgggtt	6	12	3	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	44228348	44228348	C	T	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.1600	p.L534F	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	257	0	0	176	33	15.79	-	-	-	T	44228348	C	T	44228348	3	4	528	1	0	0	0	0	1	0	0	0	5361	913	32	2	1735	2	EXT2	11	44228348	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	21955960	44228348	90778168	34	46923										
CCDC87	0	genome.wustl.edu	37	chr11	66358631	66358633	+	In_Frame_Del	DEL	TCT	TCT	-													0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ccacaatctccacaggaaccTcttcttcatgcatttgaaag							TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	66358631	66358633	TCT	-	DEL	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	in_frame_del	c.1856_1854	p.E619in_frame_del	0.736:0.765:0.754	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	184	0	0	120	27	18.37	-	-	-	-	66358633	TCT	-	66358631	7	5	528	1	0	1	0	1	0	0	0	0	2889	1551	54	0	697	0	CCDC87	11	66358631	In_Frame_Del	DEL	TCT	TCGA-BH-A0DX-01A-11D-A10Y-09	22130283	66358631	68647885	35	46924										
GUCY1A2	0	genome.wustl.edu	37	chr11	106680934	106680934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	agggaaaatagaatatagaaGatccactgtcttctttttct	7	6	3	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	106680934	106680934	G	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	missense	c.1477	p.L493F	1.000	pfam_Haem_no_assoc-bd,smart_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	296	0	0	203	45	18.15	-	-	-	A	106680934	G	A	106680934	3	1	528	1	0	0	0	0	1	0	0	0	6944	942	33	2	737	2	GUCY1A2	11	106680934	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	40322303	106680934	28325582	36	46925										
BCL9L	0	genome.wustl.edu	37	chr11	118772067	118772067	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ccccgcatcttctgcgacatCagcatctgctgctgcggggt	11	15	4	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	118772067	118772067	C	T	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	silent	c.2385	p.L795	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	169	0	0	95	24	20.17	-	-	-	T	118772067	C	T	118772067	2	4	528	1	0	0	0	0	0	0	0	1	1386	813	29	2		2	BCL9L	11	118772067	Silent	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	12091133	118772067	16234449	37	46926										
CCDC15	0	genome.wustl.edu	37	chr11	124856675	124856675	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	acctgactatgaggaatcttCatctcttgtaactgatgaga	8	8	3	4			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	11	124856675	124856675	C	T	SNP	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	missense	c.791	p.S264L	0.011	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	112	0	0	69	11	13.75	-	-	-	T	124856675	C	T	124856675	3	4	528	1	0	0	0	0	1	0	0	0	2809	838	29	2	813	2	CCDC15	11	124856675	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	6084608	124856675	10149841	38	46927										
MTUS2	0	genome.wustl.edu	37	chr13	29933532	29933532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	cagcagaccagacagctgggCgttgcgcaaggggagctgaa	16	10	0	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	13	29933532	29933532	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.3069	p.G1023	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	33	0	0	30	8	20.51	-	-	-	T	29933532	C	T	29933532	2	4	528	1	0	0	0	0	0	0	0	1	10038	755	27	1		1	MTUS2	13	29933532	Silent	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		29933532	85236346	39	46928										
NEK5	0	genome.wustl.edu	37	chr13	52667302	52667302	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ggctctcctcctcagcatatCaagttgagcataataataat	6	10	3	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	13	52667302	52667302	C	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366Y	0.992	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	308	0	0	186	41	18.06	-	-	-	A	52667302	C	A	52667302	3	1	528	1	0	0	0	0	1	0	0	0	10399	826	29	2	1070	2	NEK5	13	52667302	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	22733770	52667302	62502576	40	46929										
DIS3	0	genome.wustl.edu	37	chr13	73348184	73348184	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gcttcaacattttctcgcttAcagcagtcttaagctgagat	7	10	3	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	13	73348184	73348184	A	G	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	missense	c.1001	p.V334A	0.839	NULL	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	151	0	0	100	31	23.66	-	-	-	G	73348184	A	G	73348184	3	3	528	1	0	0	0	0	1	0	0	0	4571	391	14	5	1935	5	DIS3	13	73348184	Missense_Mutation	SNP	A	TCGA-BH-A0DX-01A-11D-A10Y-09	20680882	73348184	41821694	41	46930										
TTC5	0	genome.wustl.edu	37	chr14	20757805	20757805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gtcattcacactgtggtcgcGatgccactgtggcaacagcc	11	13	2	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	14	20757805	20757805	G	A	SNP	TTC5	ENST00000258821	human	ensembl	69_37n	-1	known	missense	c.1304	p.S435L	0.738	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC5	HGNC	ENSG00000136319	141	0	0	53	11	17.19	-	-	-	A	20757805	G	A	20757805	3	1	528	1	0	0	0	0	1	0	0	0	16808	1059	37	1	22	1	TTC5	14	20757805	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		20757805	86591735	42	46931										
MBIP	0	genome.wustl.edu	37	chr14	36781172	36781172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ggtggttacttaccttttacGtgacttttaaatccggggta	10	7	0	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	14	36781172	36781172	G	A	SNP	MBIP	ENST00000553977	human	ensembl	69_37n	-1	putative	missense	c.619	p.R207C	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MBIP	HGNC	ENSG00000151332	59	0	0	34	9	20.93	-	-	-	A	36781172	G	A	36781172	3	1	528	1	0	0	0	0	1	0	0	0	9420	1136	40	1	424	1	MBIP	14	36781172	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	16023367	36781172	70568368	43	46932										
PACS2	0	genome.wustl.edu	37	chr14	105843115	105843115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	acccgtgcaggtcctggactCggagcaggaccctgcggagc	15	14	0	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	14	105843115	105843115	C	T	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	missense	c.812	p.S271L	0.992	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	24	0	0	14	11	44	-	-	-	T	105843115	C	T	105843115	3	4	528	1	0	0	0	0	1	0	0	0	11446	893	31	1	846	1	PACS2	14	105843115	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	69061943	105843115	1506425	44	46933										
RYR3	0	genome.wustl.edu	37	chr15	34032055	34032055	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	atatgacccagatcttttccGaatggccctgccttgtctca	7	13	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	15	34032055	34032055	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.7679	p.R2560P	0.995	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	253	0	0	112	35	23.81	-	-	-	C	34032055	G	C	34032055	3	2	528	1	0	0	0	0	1	0	0	0	13856	1058	37	3	7881	3	RYR3	15	34032055	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		34032055	68499337	45	46934										
UBN1	0	genome.wustl.edu	37	chr16	4923065	4923065	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gttatggccccttctaaaatCaaggtgaaggtgagtcagtt	11	7	3	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	16	4923065	4923065	C	T	SNP	UBN1	ENST00000586716	human	ensembl	69_37n	1	novel	missense	c.170	p.S57L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN1	HGNC	ENSG00000118900	398	0	0	251	44	14.92	-	-	-	T	4923065	C	T	4923065	3	4	528	1	0	0	0	0	1	0	0	0	16989	816	29	2	1841	2	UBN1	16	4923065	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		4923065	85431688	46	46935										
ADCY7	0	genome.wustl.edu	37	chr16	50345963	50345963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gcagattgactattactgccGcttggactgcctatggaaga	11	9	0	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	16	50345963	50345963	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.2465	p.R822H	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	202	0	0	141	22	13.5	-	-	-	A	50345963	G	A	50345963	3	1	528	1	0	0	0	0	1	0	0	0	299	1087	38	1	2543	1	ADCY7	16	50345963	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	45422898	50345963	40008790	47	46936										
NLRC5	0	genome.wustl.edu	37	chr16	57060870	57060870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ccacctggattttgatggctGtcccctggagccccactgcc	10	16	0	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	16	57060870	57060870	G	A	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.2015	p.C672Y	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	75	0	0	70	11	13.58	-	-	-	A	57060870	G	A	57060870	3	1	528	1	0	0	0	0	1	0	0	0	10542	1377	48	4	2029	4	NLRC5	16	57060870	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	6714907	57060870	33293883	48	46937										
DUS3L	0	genome.wustl.edu	37	chr19	5787632	5787632	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gaggtcgatggggcagccgaCgttgatgtccacaaagtcca	14	10	0	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	19	5787632	5787632	C	A	SNP	DUS3L	ENST00000309061	human	ensembl	69_37n	-1	known	missense	c.1180	p.V394F	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994	152	0	0	77	23	23	-	-	-	A	5787632	C	A	5787632	3	1	528	1	0	0	0	0	1	0	0	0	4842	536	19	3	804	3	DUS3L	19	5787632	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		5787632	53341351	49	46938										
IL28B	0	genome.wustl.edu	37	chr19	39734315	39734315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	caacacaattcaggtctcgcGtgaggaggcggaagaggttg	15	8	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	19	39734315	39734315	G	A	SNP	IL28B	ENST00000413851	human	ensembl	69_37n	-1	known	missense	c.548	p.T183M	0.000	NULL	NULL	-	no_errors	IL28B	HGNC	ENSG00000197110	274	0	0	104	25	19.23	-	-	-	A	39734315	G	A	39734315	3	1	528	1	0	0	0	0	1	0	0	0	7737	1145	40	1	45	1	IL28B	19	39734315	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	33946683	39734315	19394668	50	46939										
NLRP2	0	genome.wustl.edu	37	chr19	55505775	55505775	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	aagttcctgtgtgaggctttGaggaaaccactgtgcaactt	11	8	0	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	19	55505775	55505775	G	C	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	missense	c.2847	p.L949F	0.021	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	362	0	0	177	35	16.51	-	-	-	C	55505775	G	C	55505775	3	2	528	1	0	0	0	0	1	0	0	0	10549	1281	45	2	2885	2	NLRP2	19	55505775	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09	15771460	55505775	3623208	51	46940										
PDYN	0	genome.wustl.edu	37	chr20	1961312	1961312	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	ccctcatcagctcagactctGctccctccctaaacccgtca	4	20	5	1			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	20	1961312	1961312	G	T	SNP	PDYN	ENST00000217305	human	ensembl	69_37n	-1	known	missense	c.422	p.A141E	0.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327	211	0	0	124	22	15.07	-	-	-	T	1961312	G	T	1961312	3	4	528	1	0	0	0	0	1	0	0	0	11772	1319	46	4	346	4	PDYN	20	1961312	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		1961312	61064208	52	46941										
ITGB2	0	genome.wustl.edu	37	chr21	46319038	46319038	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	gatgggctggatgttgttttCagccagcttgtgcgccagct	14	9	1	0			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	21	46319038	46319038	C	A	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	nonsense	c.937	p.E313*	0.996	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	246	0	0	97	26	21.14	-	-	-	A	46319038	C	A	46319038	4	1	528	1	0	0	0	0	0	1	0	0	7948	835	29	2	1408	2	ITGB2	21	46319038	Nonsense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09		46319038	1810857	53	46942										
SPIN2B	0	genome.wustl.edu	37	chrX	57146372	57146372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	agagggtttggcttccacttGgtgaatgaccatgccgatcc	12	10	0	3			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	X	57146372	57146372	G	C	SNP	SPIN2B	ENST00000275988	human	ensembl	69_37n	-1	known	missense	c.691	p.Q231E	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN2B	HGNC	ENSG00000186787	339	0	0	205	42	17	-	-	-	C	57146372	G	C	57146372	3	2	528	1	0	0	0	0	1	0	0	0	15145	1357	47	4	89	4	SPIN2B	23	57146372	Missense_Mutation	SNP	G	TCGA-BH-A0DX-01A-11D-A10Y-09		57146372	98124188	54	46943										
AFF2	0	genome.wustl.edu	37	chrX	148037760	148037760	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	22	7.8753455546599e-06	2.95818901533894	3.6794003868472	2.71027260638298	0.0450045404792314	0.346570398336128	15	cagatcaggaagagaccctgCaaatcaaagtcctgcctccg	9	13	2	2			TCGA-BH-A0DX-01A-11D-A10Y-09	TCGA-BH-A0DX-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bca403d9-48ff-4534-ba33-94b8fb9fee0f	edc2ac11-3828-41d0-abf8-976ea7c5b348	X	148037760	148037760	C	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.2185	p.Q729K	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	89	0	0	64	27	29.35	-	-	-	A	148037760	C	A	148037760	3	1	528	1	0	0	0	0	1	0	0	0	357	711	25	4	2282	4	AFF2	23	148037760	Missense_Mutation	SNP	C	TCGA-BH-A0DX-01A-11D-A10Y-09	90891388	148037760	7232800	55	46944										
CHD5	0	genome.wustl.edu	37	chr1	6214772	6214773	+	Frame_Shift_Ins	INS	-	-	G													0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcacaggctggggcacctgcINSggggggctgacggctagcgg							TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	6214772	6214773	-	G	INS	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.693_692	p.Q232fs	0.987:0.981	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	14	0	0	4	2	33.33	-	-	-	G	6214773	-	G	6214772	7	5	529	1	0	1	1	0	0	0	0	0	3357	755	27	0	5319	0	CHD5	1	6214772	Frame_Shift_Ins	INS	-	TCGA-BH-A0DZ-01A-11W-A019-09		6214772	243035849	1	46945										
MTOR	0	genome.wustl.edu	37	chr1	11317097	11317097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agtgtcccctgccatggcaaGacggccaatggccttggatg	13	12	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	11317097	11317097	G	C	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.397	p.L133V	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	62	0	0	8	10	55.56	-	-	-	C	11317097	G	C	11317097	3	2	529	1	0	0	0	0	1	0	0	0	10026	942	33	2	7472	2	MTOR	1	11317097	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	5102325	11317097	237933524	2	46946										
SPEN	0	genome.wustl.edu	37	chr1	16260889	16260889	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aacgccacggtgggcacagtGaatgccgccccaggcacagt	13	14	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	16260889	16260889	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.8154	p.V2718	0.904	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	207	1	0.48	109	45	29.22	-	-	-	A	16260889	G	A	16260889	2	1	529	1	0	0	0	0	0	0	0	1	15129	1277	45	2		2	SPEN	1	16260889	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	4943792	16260889	232989732	3	46947										
CROCC	0	genome.wustl.edu	37	chr1	17292567	17292567	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggctgagagggacagcgcaaCctcgagggccaggcagctgc	17	12	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	1	17292567	17292567	C	A	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.4649	p.T1550N	0.000	superfamily_t-SNARE	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	20	0	0	10	4	28.57	-	-	-	A	17292567	C	A	17292567	3	1	529	1	0	0	0	0	1	0	0	0	3923	507	18	4	4763	4	CROCC	1	17292567	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1031678	17292567	231958054	4	46948										
INPP5B	0	genome.wustl.edu	37	chr1	38345821	38345821	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctggaatgtgagctcaccctCtgtgaagccttcaaagacag	10	11	3	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	38345821	38345821	C	G	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	missense	c.1717	p.E573Q	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	128	0	0	65	52	44.44	-	-	-	G	38345821	C	G	38345821	3	3	529	1	0	0	0	0	1	0	0	0	7809	922	32	2	1304	2	INPP5B	1	38345821	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	21053254	38345821	210904800	5	46949										
NFYC	0	genome.wustl.edu	37	chr1	41213269	41213269	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agattatgaaactggatgaaGatgtgaaggtgaattcacat	11	3	1	6			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	41213269	41213269	G	A	SNP	NFYC	ENST00000308733	human	ensembl	69_37n	1	known	missense	c.169	p.D57N	1.000	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136	127	0	0	44	28	38.89	-	-	-	A	41213269	G	A	41213269	3	1	529	1	0	0	0	0	1	0	0	0	10463	942	33	2	175	2	NFYC	1	41213269	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2867448	41213269	208037352	6	46950										
LRRC41	0	genome.wustl.edu	37	chr1	46763977	46763977	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tttcttgagggcagtttcctCaatcctctccaagtaatata	6	10	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	46763977	46763977	C	T	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.265	p.E89K	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	176	0	0	85	18	17.48	-	-	-	T	46763977	C	T	46763977	3	4	529	1	0	0	0	0	1	0	0	0	9065	835	29	2	2209	2	LRRC41	1	46763977	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	5550708	46763977	202486644	7	46951										
CYP4X1	0	genome.wustl.edu	37	chr1	47501739	47501739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgaactcagcaaaatcatatTtcaccgcttgtacagtttgt	6	9	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	47501739	47501739	T	G	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	1	known	missense	c.671	p.F224C	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	279	0	0	99	68	40.72	-	-	-	G	47501739	T	G	47501739	3	3	529	1	0	0	0	0	1	0	0	0	4224	1841	64	5	693	5	CYP4X1	1	47501739	Missense_Mutation	SNP	T	TCGA-BH-A0DZ-01A-11W-A019-09	737762	47501739	201748882	8	46952										
HOOK1	0	genome.wustl.edu	37	chr1	60336717	60336717	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcatatcttttttccagagtGaatgcaaagtagcaaaattc	6	7	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	60336717	60336717	G	A	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.1951	p.E651K	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	27	0	0	14	16	53.33	-	-	-	A	60336717	G	A	60336717	3	1	529	1	0	0	0	0	1	0	0	0	7333	1291	45	2	2033	2	HOOK1	1	60336717	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	12834978	60336717	188913904	9	46953										
FAM46C	0	genome.wustl.edu	37	chr1	118166486	118166486	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cgcaggcagactctgaacctCatctccctcctggccttgcg	9	17	3	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	118166486	118166486	C	T	SNP	FAM46C	ENST00000369448	human	ensembl	69_37n	1	known	silent	c.996	p.L332	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46C	HGNC	ENSG00000183508	200	0	0	71	54	43.2	-	-	-	T	118166486	C	T	118166486	2	4	529	1	0	0	0	0	0	0	0	1	5613	813	29	2		2	FAM46C	1	118166486	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	57829769	118166486	131084135	10	46954										
NOTCH2	0	genome.wustl.edu	37	chr1	120484367	120484367	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tccatacaggaacctccattCtggcaaggatctaagccatt	7	12	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	120484367	120484367	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	silent	c.2763	p.Q921	1.000	pirsf_Notch,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	93	0	0	72	28	28	-	-	-	T	120484367	C	T	120484367	2	4	529	1	0	0	0	0	0	0	0	1	10620	912	32	2		2	NOTCH2	1	120484367	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2317881	120484367	128766254	11	46955										
FLG	0	genome.wustl.edu	37	chr1	152279083	152279083	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggcgggatccttgtcttcctCtagtgctgggccccgtccat	12	14	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	152279083	152279083	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8279	p.R2760T	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	153	0	0	196	38	16.24	-	-	-	G	152279083	C	G	152279083	3	3	529	1	0	0	0	0	1	0	0	0	5968	913	32	2	3910	2	FLG	1	152279083	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	31794716	152279083	96971538	12	46956										
FCRL3	0	genome.wustl.edu	37	chr1	157659599	157659599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gacacccacctggtttccttCgggccctggcgtaatgcagc	11	15	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	157659599	157659599	C	T	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	missense	c.1799	p.R600Q	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	99	0	0	72	35	32.71	-	-	-	T	157659599	C	T	157659599	3	4	529	1	0	0	0	0	1	0	0	0	5842	884	31	1	429	1	FCRL3	1	157659599	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	5380516	157659599	91591022	13	46957										
ATP1A4	0	genome.wustl.edu	37	chr1	160136489	160136489	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggtttgatatgaccgtgtatGaggccgacaccactgaagaa	12	8	0	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	160136489	160136489	G	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.1219	p.E407Q	0.973	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	176	0	0	79	62	43.97	-	-	-	C	160136489	G	C	160136489	3	2	529	1	0	0	0	0	1	0	0	0	1135	1291	45	2	1249	2	ATP1A4	1	160136489	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2476890	160136489	89114132	14	46958										
ARHGAP30	0	genome.wustl.edu	37	chr1	161026205	161026205	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttgtcatagagccggtaagtGagcaggggatccggcagttc	15	8	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	161026205	161026205	G	C	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	silent	c.318	p.L106	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	50	0	0	19	6	24	-	-	-	C	161026205	G	C	161026205	2	2	529	1	0	0	0	0	0	0	0	1	881	1277	45	2		2	ARHGAP30	1	161026205	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	889716	161026205	88224416	15	46959										
OLFML2B	0	genome.wustl.edu	37	chr1	161970068	161970068	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agccaggggtcgcgtctgcaGaagttcgatggagttgatct	15	8	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	161970068	161970068	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	silent	c.784	p.L262	0.981	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	186	0	0	122	49	28.65	-	-	-	A	161970068	G	A	161970068	2	1	529	1	0	0	0	0	0	0	0	1	10931	933	33	2		2	OLFML2B	1	161970068	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	943863	161970068	87280553	16	46960										
GORAB	0	genome.wustl.edu	37	chr1	170501403	170501403	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggattctctgaggaggaactGaggagactaaagcagactaa	13	6	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	170501403	170501403	G	C	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	silent	c.114	p.L38	1.000	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	106	0	0	66	19	22.35	-	-	-	C	170501403	G	C	170501403	2	2	529	1	0	0	0	0	0	0	0	1	6623	1277	45	2		2	GORAB	1	170501403	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8531335	170501403	78749218	17	46961										
FMO2	0	genome.wustl.edu	37	chr1	171154948	171154948	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cttgagcccacttgctttgaGagaactgaagatattggagg	12	7	0	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	171154948	171154948	G	C	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	missense	c.96	p.E32D	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	244	0	0	198	68	25.47	-	-	-	C	171154948	G	C	171154948	3	2	529	1	0	0	0	0	1	0	0	0	6001	933	33	2	98	2	FMO2	1	171154948	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	653545	171154948	78095673	18	46962										
CEP350	0	genome.wustl.edu	37	chr1	180034352	180034352	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccatttcaatctccagcagtGaaactagcagcattatgcag	7	11	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	180034352	180034352	G	A	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.5512	p.E1838K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	58	0	0	44	44	50	-	-	-	A	180034352	G	A	180034352	3	1	529	1	0	0	0	0	1	0	0	0	3283	1291	45	2	5614	2	CEP350	1	180034352	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8879404	180034352	69216269	19	46963										
DENND1B	0	genome.wustl.edu	37	chr1	197479960	197479960	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gagaatctgtcaaaccactaGaggaaacccgcttcctagga	9	11	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	197479960	197479960	G	C	SNP	DENND1B	ENST00000391979	human	ensembl	69_37n	-1	putative	missense	c.878	p.S293C	0.841	NULL	NULL	-	no_start_codon	DENND1B	HGNC	ENSG00000213047	106	0	0	178	75	29.64	-	-	-	C	197479960	G	C	197479960	3	2	529	1	0	0	0	0	1	0	0	0	4463	942	33	2	373	2	DENND1B	1	197479960	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	17445608	197479960	51770661	20	46964										
KIF14	0	genome.wustl.edu	37	chr1	200586951	200586951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tctattcttcagtattgatgGagctgggctcttaagctgag	11	7	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	200586951	200586951	G	C	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.901	p.P301A	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	268	0	0	201	74	26.91	-	-	-	C	200586951	G	C	200586951	3	2	529	1	0	0	0	0	1	0	0	0	8328	1174	41	2	4161	2	KIF14	1	200586951	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3106991	200586951	48663670	21	46965										
PKP1	0	genome.wustl.edu	37	chr1	201292174	201292174	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actgccccctgcctgaggaaGagaccaaccccaagggcagc	11	16	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	201292174	201292174	G	C	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	missense	c.1600	p.E534Q	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	89	0	0	51	29	36.25	-	-	-	C	201292174	G	C	201292174	3	2	529	1	0	0	0	0	1	0	0	0	12058	943	33	2	1638	2	PKP1	1	201292174	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	705223	201292174	47958447	22	46966										
NAV1	0	genome.wustl.edu	37	chr1	201751591	201751591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggcgcaagactagcttagatGtttccaacagtgcagagcca	11	10	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	201751591	201751591	G	A	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.1951	p.V651I	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	235	0	0	266	129	32.66	-	-	-	A	201751591	G	A	201751591	3	1	529	1	0	0	0	0	1	0	0	0	10255	1377	48	4	2030	4	NAV1	1	201751591	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	459417	201751591	47499030	23	46967										
USH2A	0	genome.wustl.edu	37	chr1	216373262	216373262	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctatgggaccagattgatttGagagtgttgtccaggtaagt	13	5	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	216373262	216373262	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3518	p.S1173L	0.818	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	283	0	0	243	100	29.15	-	-	-	A	216373262	G	A	216373262	3	1	529	1	0	0	0	0	1	0	0	0	17133	1294	45	2	12328	2	USH2A	1	216373262	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	14621671	216373262	32877359	24	46968										
CAPN2	0	genome.wustl.edu	37	chr1	223940585	223940585	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctcaccagcgatacctacaaGaagtggaaactcaccaaaat	6	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	223940585	223940585	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	silent	c.1062	p.K354	1.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	142	0	0	37	16	30.19	-	-	-	A	223940585	G	A	223940585	2	1	529	1	0	0	0	0	0	0	0	1	2652	933	33	2		2	CAPN2	1	223940585	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	7567323	223940585	25310036	25	46969										
OR14I1	0	genome.wustl.edu	37	chr1	248845114	248845114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acactggatctgcaaacgtgCtcccgaaacatgttgccagt	9	12	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	1	248845114	248845114	C	T	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	silent	c.492	p.E164	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	118	0	0	78	30	27.78	-	-	-	T	248845114	C	T	248845114	2	4	529	1	0	0	0	0	0	0	0	1	11020	796	28	4		4	OR14I1	1	248845114	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	24904529	248845114	405507	26	46970										
ASXL2	0	genome.wustl.edu	37	chr2	25972681	25972681	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agtgacacgtggcctcttctCccagctcacaggggcctctt	10	15	4	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	25972681	25972681	C	G	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1744	p.E582Q	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	121	0	0	132	47	26.26	-	-	-	G	25972681	C	G	25972681	3	3	529	1	0	0	0	0	1	0	0	0	1071	864	30	2	2571	2	ASXL2	2	25972681	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		25972681	217226692	27	46971										
C2orf16	0	genome.wustl.edu	37	chr2	27801094	27801094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actgcaatatgtgagaccttCagagcaccacacagggccat	9	12	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	27801094	27801094	C	T	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.1655	p.S552L	0.007	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	213	0	0	151	58	27.75	-	-	-	T	27801094	C	T	27801094	3	4	529	1	0	0	0	0	1	0	0	0	2177	838	29	2	1657	2	C2orf16	2	27801094	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1828413	27801094	215398279	28	46972										
CCDC88A	0	genome.wustl.edu	37	chr2	55522603	55522603	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaaaatgtgaccttcctgttCttgagtttctagcctgggca	10	9	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	55522603	55522603	C	T	SNP	CCDC88A	ENST00000426576	human	ensembl	69_37n	-1	putative	missense	c.3206	p.R1069K	0.555	NULL	NULL	-	no_start_codon	CCDC88A	HGNC	ENSG00000115355	43	0	0	35	21	37.5	-	-	-	T	55522603	C	T	55522603	3	4	529	1	0	0	0	0	1	0	0	0	2890	928	32	2		2	CCDC88A	2	55522603	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	27721509	55522603	187676770	29	46973										
SMYD5	0	genome.wustl.edu	37	chr2	73447268	73447268	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gccaggttctgcctcacccaGagctgtgcactgtgcgcaaa	11	14	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	73447268	73447268	G	C	SNP	SMYD5	ENST00000389501	human	ensembl	69_37n	1	known	missense	c.295	p.E99Q	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632	77	0	0	30	16	34.78	-	-	-	C	73447268	G	C	73447268	3	2	529	1	0	0	0	0	1	0	0	0	14914	943	33	2	305	2	SMYD5	2	73447268	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	17924665	73447268	169752105	30	46974										
SNRNP200	0	genome.wustl.edu	37	chr2	96944592	96944592	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctgtgtcatgcggcggtacaGaaaggtccaggtgaggtagt	16	7	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	96944592	96944592	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.5278	p.L1760	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	169	0	0	77	31	28.7	-	-	-	A	96944592	G	A	96944592	2	1	529	1	0	0	0	0	0	0	0	1	14941	933	33	2		2	SNRNP200	2	96944592	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	23497324	96944592	146254781	31	46975										
ANKRD36	0	genome.wustl.edu	37	chr2	97783882	97783882	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agaagatgtgagcttaacctCtgcgaccgtgaagacaggac	12	9	1	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	97783882	97783882	C	T	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	silent	c.279	p.L93	0.990	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	23	0	0	14	8	36.36	-	-	-	T	97783882	C	T	97783882	2	4	529	1	0	0	0	0	0	0	0	1	664	900	32	2		2	ANKRD36	2	97783882	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	839290	97783882	145415491	32	46976										
REV1	0	genome.wustl.edu	37	chr2	100065947	100065947	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgcaacatcattagttttctCaattcctcagcggaaggatc	7	10	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	100065947	100065947	C	T	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	silent	c.201	p.L67	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	114	0	0	108	46	29.87	-	-	-	T	100065947	C	T	100065947	2	4	529	1	0	0	0	0	0	0	0	1	13322	825	29	2		2	REV1	2	100065947	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2282065	100065947	143133426	33	46977										
GPR17	0	genome.wustl.edu	37	chr2	128409206	128409206	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaccccatcatgtatttcttCgtggctgagaagttccgcca	9	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	128409206	128409206	C	T	SNP	GPR17	ENST00000272644	human	ensembl	69_37n	1	known	silent	c.981	p.F327	0.547	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230	26	0	0	10	11	52.38	-	-	-	T	128409206	C	T	128409206	2	4	529	1	0	0	0	0	0	0	0	1	6717	883	31	1		1	GPR17	2	128409206	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	28343259	128409206	114790167	34	46978										
CCDC74B	0	genome.wustl.edu	37	chr2	130898813	130898813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttccaggtccgccttctgggGgacgtcagcttttgaatctt	11	11	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	130898813	130898813	G	A	SNP	CCDC74B	ENST00000392984	human	ensembl	69_37n	-1	known	missense	c.907	p.P303S	0.003	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	27	0	0	13	3	18.75	-	-	-	A	130898813	G	A	130898813	3	1	529	1	0	0	0	0	1	0	0	0	2875	1232	43	4	561	4	CCDC74B	2	130898813	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2489607	130898813	112300560	35	46979										
KIF5C	0	genome.wustl.edu	37	chr2	149806935	149806935	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgctgttctccttctgtcttCaatgaggctgagaccaagtc	9	11	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	149806935	149806935	C	T	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	silent	c.927	p.F309	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	87	0	0	57	32	35.96	-	-	-	T	149806935	C	T	149806935	2	4	529	1	0	0	0	0	0	0	0	1	8359	825	29	2		2	KIF5C	2	149806935	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	18908122	149806935	93392438	36	46980										
PKP4	0	genome.wustl.edu	37	chr2	159488403	159488403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtaccgcagcccaaaccatgGaactgtggagctccaaggat	11	12	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	159488403	159488403	G	A	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.1292	p.G431E	0.995	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	117	0	0	87	34	28.1	-	-	-	A	159488403	G	A	159488403	3	1	529	1	0	0	0	0	1	0	0	0	12061	1174	41	2	1318	2	PKP4	2	159488403	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	9681468	159488403	83710970	37	46981										
ITGB6	0	genome.wustl.edu	37	chr2	160994606	160994606	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actttcatgtgagagcatttCttttggtgttggaagagggt	13	4	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	160994606	160994606	C	G	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	missense	c.1212	p.K404N	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	231	0	0	144	74	33.94	-	-	-	G	160994606	C	G	160994606	3	3	529	1	0	0	0	0	1	0	0	0	7953	912	32	2	1182	2	ITGB6	2	160994606	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1506203	160994606	82204767	38	46982										
COL3A1	0	genome.wustl.edu	37	chr2	189875538	189875538	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtaaagaaggccctgaagctGatggggtcaaatgaaggtga	15	5	1	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	189875538	189875538	G	C	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	silent	c.4176	p.L1392	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	147	0	0	92	39	29.77	-	-	-	C	189875538	G	C	189875538	2	2	529	1	0	0	0	0	0	0	0	1	3718	1277	45	2		2	COL3A1	2	189875538	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	28880932	189875538	53323835	39	46983										
SPHKAP	0	genome.wustl.edu	37	chr2	228884261	228884261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgaccgagaaaccactgtatCttttgtggaatagcaactgg	10	8	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	2	228884261	228884261	C	G	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.1309	p.D437H	0.917	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	177	0	0	78	31	28.44	-	-	-	G	228884261	C	G	228884261	3	3	529	1	0	0	0	0	1	0	0	0	15139	913	32	2	3817	2	SPHKAP	2	228884261	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	39008723	228884261	14315112	40	46984										
GOLGA4	0	genome.wustl.edu	37	chr3	37367848	37367848	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgaaggaagagcttgatcagCaaaataaaagatttgattgt	10	3	1	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	37367848	37367848	C	T	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	nonsense	c.4471	p.Q1491*	0.397	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	291	0	0	307	143	31.78	-	-	-	T	37367848	C	T	37367848	4	4	529	1	0	0	0	0	0	1	0	0	6607	711	25	4	4595	4	GOLGA4	3	37367848	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		37367848	160654582	41	46985										
GOLGA4	0	genome.wustl.edu	37	chr3	37368485	37368485	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtcagtggaaagttcacagtCagaaacattaattgtaccca	8	8	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	37368485	37368485	C	G	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	nonsense	c.5108	p.S1703*	0.279	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	595	0	0	543	260	32.34	-	-	-	G	37368485	C	G	37368485	4	3	529	1	0	0	0	0	0	1	0	0	6607	838	29	2	5232	2	GOLGA4	3	37368485	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	637	37368485	160653945	42	46986										
SCN5A	0	genome.wustl.edu	37	chr3	38655497	38655497	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaaatagtttttagagctctCaggactctgaaagttcgaag	10	6	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	38655497	38655497	C	T	SNP	SCN5A	ENST00000413689	human	ensembl	69_37n	-1	known	silent	c.672	p.L224	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	31	0	0	14	8	36.36	-	-	-	T	38655497	C	T	38655497	2	4	529	1	0	0	0	0	0	0	0	1	14010	813	29	2		2	SCN5A	3	38655497	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1287012	38655497	159366933	43	46987										
CDCP1	0	genome.wustl.edu	37	chr3	45134773	45134773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gggagaccccccttacctttGaaataaggtataaaggacac	9	10	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	45134773	45134773	G	A	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	silent	c.1623	p.F541	0.973	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	94	0	0	60	36	37.5	-	-	-	A	45134773	G	A	45134773	2	1	529	1	0	0	0	0	0	0	0	1	3122	1281	45	2		2	CDCP1	3	45134773	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	6479276	45134773	152887657	44	46988										
FOXP1	0	genome.wustl.edu	37	chr3	71247211	71247211	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctagagggctgatggtttatGagatgccactgacagacaga	13	7	0	6			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	71247211	71247211	G	C	SNP	FOXP1	ENST00000318779	human	ensembl	69_37n	-1	putative	silent	c.189	p.L63	0.000	NULL	NULL	-	no_errors	FOXP1	HGNC	ENSG00000114861	275	0	0	35	11	23.91	-	-	-	C	71247211	G	C	71247211	2	2	529	1	0	0	0	0	0	0	0	1	6074	1277	45	2		2	FOXP1	3	71247211	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	26112438	71247211	126775219	45	46989										
MYH15	0	genome.wustl.edu	37	chr3	108107918	108107918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagttcaccttccagttcacGaacctgcaaccaaaacgtga	6	14	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	108107918	108107918	G	A	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.5494	p.R1832C	0.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	167	0	0	84	41	32.8	-	-	-	A	108107918	G	A	108107918	3	1	529	1	0	0	0	0	1	0	0	0	10106	1058	37	1	362	1	MYH15	3	108107918	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	36860707	108107918	89914512	46	46990										
ARHGAP31	0	genome.wustl.edu	37	chr3	119134755	119134755	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	accttctttcttcaaaactaGagcgaccatctgggggttct	8	11	5	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	119134755	119134755	G	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.3979	p.E1327Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	154	0	0	272	123	31.14	-	-	-	C	119134755	G	C	119134755	3	2	529	1	0	0	0	0	1	0	0	0	882	943	33	2	4025	2	ARHGAP31	3	119134755	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	11026837	119134755	78887675	47	46991										
POLQ	0	genome.wustl.edu	37	chr3	121238843	121238843	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtgcaggtaaattcaccccaGaagaaagagtagaagttgcc	11	8	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	121238843	121238843	G	T	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.1343	p.S448Y	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	276	1	0.36	178	92	33.7	-	-	-	T	121238843	G	T	121238843	3	4	529	1	0	0	0	0	1	0	0	0	12282	942	33	2	6517	2	POLQ	3	121238843	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2104088	121238843	76783587	48	46992										
ILDR1	0	genome.wustl.edu	37	chr3	121720279	121720279	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aggaggagggctcccaggatGatgaagatcactgtcagcca	14	9	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	121720279	121720279	G	A	SNP	ILDR1	ENST00000344209	human	ensembl	69_37n	-1	known	silent	c.522	p.I174	0.999	pfam_LISCH7	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103	146	0	0	50	27	35.06	-	-	-	A	121720279	G	A	121720279	2	1	529	1	0	0	0	0	0	0	0	1	7763	1280	45	2		2	ILDR1	3	121720279	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	481436	121720279	76302151	49	46993										
ZXDC	0	genome.wustl.edu	37	chr3	126185056	126185056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atgctgtgcttggaggtgaaGagtctgttgcaggtagaaac	15	5	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	126185056	126185056	G	C	SNP	ZXDC	ENST00000515545	human	ensembl	69_37n	-1	known	missense	c.505	p.L169V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZXDC	HGNC	ENSG00000070476	101	0	0	33	26	44.07	-	-	-	C	126185056	G	C	126185056	3	2	529	1	0	0	0	0	1	0	0	0	18343	929	33	2	1223	2	ZXDC	3	126185056	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	4464777	126185056	71837374	50	46994										
VPS8	0	genome.wustl.edu	37	chr3	184543993	184543993	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttcctcaagttgatactcctCcaacactggaaagcatacta	5	12	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	184543993	184543993	C	G	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	1	known	missense	c.196	p.P66A	1.000	NULL	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	134	0	0	87	27	23.68	-	-	-	G	184543993	C	G	184543993	3	3	529	1	0	0	0	0	1	0	0	0	17315	855	30	2	202	2	VPS8	3	184543993	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	58358937	184543993	13478437	51	46995										
MAP3K13	0	genome.wustl.edu	37	chr3	185165697	185165697	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcatggatggcgccagaggtGatacggaatgaacctgtctc	14	9	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	3	185165697	185165697	G	C	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	silent	c.972	p.V324	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	76	0	0	42	16	27.59	-	-	-	C	185165697	G	C	185165697	2	2	529	1	0	0	0	0	0	0	0	1	9318	1277	45	2		2	MAP3K13	3	185165697	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	621704	185165697	12856733	52	46996										
ZNF721	0	genome.wustl.edu	37	chr4	437193	437193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtaaggtttctctccagtatGaattctcctatgtacgtaaa	7	8	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	437193	437193	G	C	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.1063	p.H355D	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	367	0	0	220	92	29.49	-	-	-	C	437193	G	C	437193	3	2	529	1	0	0	0	0	1	0	0	0	18218	1290	45	2	1712	2	ZNF721	4	437193	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		437193	190717083	53	46997										
TBC1D14	0	genome.wustl.edu	37	chr4	7026815	7026815	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgtcgcgatggggaagagttCctgttccgcacggccctggg	16	11	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	7026815	7026815	C	T	SNP	TBC1D14	ENST00000409757	human	ensembl	69_37n	1	known	silent	c.1842	p.F614	0.914	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D14	HGNC	ENSG00000132405	246	0	0	238	109	31.41	-	-	-	T	7026815	C	T	7026815	2	4	529	1	0	0	0	0	0	0	0	1	15695	854	30	2		2	TBC1D14	4	7026815	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6589622	7026815	184127461	54	46998										
CLRN2	0	genome.wustl.edu	37	chr4	17528651	17528651	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agtcaaattcccctccctgaGattaagaccaaaatcgaaga	6	11	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	17528651	17528651	G	A	SNP	CLRN2	ENST00000511148	human	ensembl	69_37n	1	known	silent	c.645	p.E215	0.997	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLRN2	HGNC	ENSG00000249581	204	0	0	126	64	33.68	-	-	-	A	17528651	G	A	17528651	2	1	529	1	0	0	0	0	0	0	0	1	3588	933	33	2		2	CLRN2	4	17528651	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	10501836	17528651	173625625	55	46999										
PTTG2	0	genome.wustl.edu	37	chr4	37962331	37962331	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccaagcttttctgccaaaaaGatgaccgagaagactgttaa	8	9	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	37962331	37962331	G	C	SNP	PTTG2	ENST00000504686	human	ensembl	69_37n	1	known	missense	c.276	p.K92N	0.015	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG2	HGNC	ENSG00000250254	339	0	0	290	131	31.12	-	-	-	C	37962331	G	C	37962331	3	2	529	1	0	0	0	0	1	0	0	0	12904	933	33	2	278	2	PTTG2	4	37962331	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	20433680	37962331	153191945	56	47000										
FAM114A1	0	genome.wustl.edu	37	chr4	38879718	38879718	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaatgtctgatgatgctggtGacaccttagccactggagac	11	9	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	38879718	38879718	G	A	SNP	FAM114A1	ENST00000358869	human	ensembl	69_37n	1	known	missense	c.19	p.D7N	0.663	NULL	pfam_DUF719	-	no_errors	FAM114A1	HGNC	ENSG00000197712	91	0	0	65	31	32.29	-	-	-	A	38879718	G	A	38879718	3	1	529	1	0	0	0	0	1	0	0	0	5443	1290	45	2	21	2	FAM114A1	4	38879718	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	917387	38879718	152274558	57	47001										
RFC1	0	genome.wustl.edu	37	chr4	39310356	39310356	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgctgtccaattatggtcttGagcgaggttggcttatattt	11	6	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	39310356	39310356	G	C	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	silent	c.1785	p.L595	1.000	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	507	0	0	325	135	29.35	-	-	-	C	39310356	G	C	39310356	2	2	529	1	0	0	0	0	0	0	0	1	13327	1277	45	2		2	RFC1	4	39310356	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	430638	39310356	151843920	58	47002										
TXK	0	genome.wustl.edu	37	chr4	48081956	48081956	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctatgaatatagccattcctCtccagatattccattccttc	3	13	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	48081956	48081956	C	T	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	silent	c.1146	p.E382	0.983	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	486	1	0.21	472	156	24.8	-	-	-	T	48081956	C	T	48081956	2	4	529	1	0	0	0	0	0	0	0	1	16883	912	32	2		2	TXK	4	48081956	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	8771600	48081956	143072320	59	47003										
PAICS	0	genome.wustl.edu	37	chr4	57314891	57314891	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tccagattgaatttggtgttGatgtaaccaccaaagaaatt	8	6	0	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	57314891	57314891	G	C	SNP	PAICS	ENST00000264221	human	ensembl	69_37n	1	known	missense	c.589	p.D197H	1.000	pfam_SAICAR_synth	pfam_SAICAR_synth,pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050	62	0	0	43	15	25.42	-	-	-	C	57314891	G	C	57314891	3	2	529	1	0	0	0	0	1	0	0	0	11468	1290	45	2	632	2	PAICS	4	57314891	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	9232935	57314891	133839385	60	47004										
UGT2B4	0	genome.wustl.edu	37	chr4	70346610	70346610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgatgaattcttgataatttCatagcattctctttatatct	4	6	4	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	70346610	70346610	C	G	SNP	UGT2B4	ENST00000305107	human	ensembl	69_37n	-1	known	missense	c.1329	p.M443I	0.960	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	273	0	0	224	86	27.74	-	-	-	G	70346610	C	G	70346610	3	3	529	1	0	0	0	0	1	0	0	0	17058	826	29	2	261	2	UGT2B4	4	70346610	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	13031719	70346610	120807666	61	47005										
SHROOM3	0	genome.wustl.edu	37	chr4	77357221	77357221	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttggcatgatgaggaccactGaagacttccacaagcctagt	10	10	0	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	77357221	77357221	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.16	p.E6K	0.748	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	205	0	0	152	72	32.14	-	-	-	A	77357221	G	A	77357221	3	1	529	1	0	0	0	0	1	0	0	0	14384	1291	45	2	18	2	SHROOM3	4	77357221	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	7010611	77357221	113797055	62	47006										
FRAS1	0	genome.wustl.edu	37	chr4	79188530	79188530	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cctgtgagttctgcatgtgtGatcatggccaagtgacctgc	12	10	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	79188530	79188530	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.925	p.D309N	0.012	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	39	0	0	13	6	30	-	-	-	A	79188530	G	A	79188530	3	1	529	1	0	0	0	0	1	0	0	0	6090	1290	45	2	959	2	FRAS1	4	79188530	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1831309	79188530	111965746	63	47007										
WDFY3	0	genome.wustl.edu	37	chr4	85762417	85762417	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tatggcccgacttgcagcctCtataaaaccaaagggaaagc	9	11	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	85762417	85762417	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	splice_site	c.305-1	e3-1	1.000	-	-	-	no_errors	WDFY3	HGNC	ENSG00000163625	77	0	0	72	44	37.93	-	-	-	A	85762417	C	A	85762417	5	1	529	1	0	0	0	0	0	0	1	0	17367	927	32	2	10571	2	WDFY3	4	85762417	Splice_Site	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6573887	85762417	105391859	64	47008										
HERC5	0	genome.wustl.edu	37	chr4	89388332	89388332	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gccgcttccagtgaaagtatCatcaagtgaagaactcaaac	8	10	3	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	89388332	89388332	C	A	SNP	HERC5	ENST00000264350	human	ensembl	69_37n	1	known	nonsense	c.1034	p.S345*	0.324	pfam_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646	294	0	0	137	48	25.95	-	-	-	A	89388332	C	A	89388332	4	1	529	1	0	0	0	0	0	1	0	0	7112	838	29	2	1060	2	HERC5	4	89388332	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3625915	89388332	101765944	65	47009										
KIAA1109	0	genome.wustl.edu	37	chr4	123239318	123239318	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccagaaaattaggtgcaagtGaaggaaccataaaccaggaa	10	7	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	123239318	123239318	G	C	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.10687	p.E3563Q	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	154	0	0	184	96	34.29	-	-	-	C	123239318	G	C	123239318	3	2	529	1	0	0	0	0	1	0	0	0	8260	1291	45	2	10929	2	KIAA1109	4	123239318	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	33850986	123239318	67914958	66	47010										
TTC29	0	genome.wustl.edu	37	chr4	147724765	147724765	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aacttttgtctcatccatcaGaggcatgctcattagctcta	6	11	4	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	147724765	147724765	G	A	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	silent	c.1252	p.L418	0.469	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	21	0	0	36	14	28	-	-	-	A	147724765	G	A	147724765	2	1	529	1	0	0	0	0	0	0	0	1	16793	933	33	2		2	TTC29	4	147724765	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	24485447	147724765	43429511	67	47011										
FGA	0	genome.wustl.edu	37	chr4	155507703	155507703	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agctcccagagttccagcttCcagcactgctagggttcctg	10	14	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	155507703	155507703	C	A	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.878	p.G293V	0.903	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	245	0	0	161	75	31.78	-	-	-	A	155507703	C	A	155507703	3	1	529	1	0	0	0	0	1	0	0	0	5876	855	30	2	1774	2	FGA	4	155507703	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	7782938	155507703	35646573	68	47012										
SORBS2	0	genome.wustl.edu	37	chr4	186510869	186510869	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atcacacttttccatgacatCaatgacatcactttctctga	3	12	4	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	4	186510869	186510869	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.3205	p.D1069N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	382	0	0	117	76	39.38	-	-	-	T	186510869	C	T	186510869	3	4	529	1	0	0	0	0	1	0	0	0	15017	826	29	2	105	2	SORBS2	4	186510869	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	31003166	186510869	4643407	69	47013										
SLC38A9	0	genome.wustl.edu	37	chr5	54923793	54923793	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acaataattagattaagaatCagcacatggaaaatgctaga	7	5	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	5	54923793	54923793	C	G	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	silent	c.1446	p.L482	0.477	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	81	0	0	54	28	34.15	-	-	-	G	54923793	C	G	54923793	2	3	529	1	0	0	0	0	0	0	0	1	14700	813	29	2		2	SLC38A9	5	54923793	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		54923793	125991467	70	47014										
MAP3K1	0	genome.wustl.edu	37	chr5	56171088	56171088	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggaggcatgctgcagcgttcTgtcaatggtctgtgctgacc	14	10	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	5	56171088	56171088	T	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.1916	p.L639P	0.991	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	156	0	0	145	41	22.04	-	-	-	C	56171088	T	C	56171088	3	2	529	1	0	0	0	0	1	0	0	0	9314	1580	55	5	1954	5	MAP3K1	5	56171088	Missense_Mutation	SNP	T	TCGA-BH-A0DZ-01A-11W-A019-09	1247295	56171088	124744172	71	47015										
DEPDC1B	0	genome.wustl.edu	37	chr5	59941334	59941334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	catactatgataatgtcataGacttccatatctcttctaca	3	10	3	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	5	59941334	59941334	G	A	SNP	DEPDC1B	ENST00000265036	human	ensembl	69_37n	-1	known	missense	c.563	p.S188F	1.000	NULL	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499	124	0	0	103	19	15.57	-	-	-	A	59941334	G	A	59941334	3	1	529	1	0	0	0	0	1	0	0	0	4476	942	33	2	1058	2	DEPDC1B	5	59941334	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3770246	59941334	120973926	72	47016										
ARSB	0	genome.wustl.edu	37	chr5	78181569	78181569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttgccacaaagcccacccctCggacgcctccttcccacagg	7	20	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	5	78181569	78181569	C	T	SNP	ARSB	ENST00000264914	human	ensembl	69_37n	-1	known	missense	c.980	p.R327Q	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSB	HGNC	ENSG00000113273	176	0	0	147	64	30.19	-	-	-	T	78181569	C	T	78181569	3	4	529	1	0	0	0	0	1	0	0	0	992	884	31	1	670	1	ARSB	5	78181569	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	18240235	78181569	102733691	73	47017										
CAMK2A	0	genome.wustl.edu	37	chr5	149636190	149636190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagtgcagcacagcctccagGatctgctggatacagtgact	11	12	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	5	149636190	149636190	G	C	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	missense	c.357	p.I119M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	34	0	0	13	5	27.78	-	-	-	C	149636190	G	C	149636190	3	2	529	1	0	0	0	0	1	0	0	0	2624	1164	41	2	1168	2	CAMK2A	5	149636190	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	71454621	149636190	31279070	74	47018										
NUP153	0	genome.wustl.edu	37	chr6	17637546	17637546	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agatgaagcagtcatagtctCagcactttccgaaaccactg	8	11	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	17637546	17637546	C	G	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.2395	p.E799Q	0.002	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	395	0	0	420	63	13.04	-	-	-	G	17637546	C	G	17637546	3	3	529	1	0	0	0	0	1	0	0	0	10828	835	29	2	2153	2	NUP153	6	17637546	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		17637546	153477521	75	47019										
KIF13A	0	genome.wustl.edu	37	chr6	17797021	17797021	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tccatctgaaatgaactccaGaaattcttctgttacattca	4	10	4	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	17797021	17797021	G	A	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	silent	c.2821	p.L941	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	214	0	0	144	65	30.95	-	-	-	A	17797021	G	A	17797021	2	1	529	1	0	0	0	0	0	0	0	1	8326	933	33	2		2	KIF13A	6	17797021	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	159475	17797021	153318046	76	47020										
KIAA0319	0	genome.wustl.edu	37	chr6	24596268	24596268	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caggtaatggagctcagggtCctgctgcgtctccgctggca	14	12	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	24596268	24596268	C	G	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.634	p.D212H	0.169	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	194	0	0	96	45	31.91	-	-	-	G	24596268	C	G	24596268	3	3	529	1	0	0	0	0	1	0	0	0	8220	855	30	2	2660	2	KIAA0319	6	24596268	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6799247	24596268	146518799	77	47021										
C6orf62	0	genome.wustl.edu	37	chr6	24706365	24706365	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccattttgctggtcagtactCtactctggcatataaggacg	9	10	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	24706365	24706365	C	G	SNP	C6orf62	ENST00000378119	human	ensembl	69_37n	-1	known	nonstop	c.690	p.*230Y	0.991	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308	59	0	0	41	24	36.92	-	-	-	G	24706365	C	G	24706365	4	3	529	1	0	0	0	0	0	0	0	0	2390	924	32	2	3	2	C6orf62	6	24706365	Nonstop_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	110097	24706365	146408702	78	47022										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056039	26056039	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttcttcttgggcgccgccttCttaggcttgacaaccttggg	11	12	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	26056039	26056039	C	A	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	missense	c.618	p.K206N	1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	55	0	0	58	28	32.56	-	-	-	A	26056039	C	A	26056039	3	1	529	1	0	0	0	0	1	0	0	0	7175	912	32	2	27	2	HIST1H1C	6	26056039	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1349674	26056039	145059028	79	47023										
MAS1L	0	genome.wustl.edu	37	chr6	29455047	29455047	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acatgtttccagtaagttagGaaaagtgattttactatgtt	8	4	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	29455047	29455047	G	A	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	silent	c.633	p.F211	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	179	0	0	95	50	34.48	-	-	-	A	29455047	G	A	29455047	2	1	529	1	0	0	0	0	0	0	0	1	9392	1165	41	2		2	MAS1L	6	29455047	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3399008	29455047	141660020	80	47024										
MAS1L	0	genome.wustl.edu	37	chr6	29455193	29455193	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgtgctgatggccaccaggaGacagagacacacctcaaagg	12	11	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	29455193	29455193	G	A	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.487	p.L163F	0.017	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	181	0	0	68	35	33.98	-	-	-	A	29455193	G	A	29455193	3	1	529	1	0	0	0	0	1	0	0	0	9392	942	33	2	651	2	MAS1L	6	29455193	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	146	29455193	141659874	81	47025										
PRRT1	0	genome.wustl.edu	37	chr6	32117479	32117479	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaggtcactcctgttcccccCggggtcccgcctgcatatgg	12	16	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	32117479	32117479	C	T	SNP	PRRT1	ENST00000211413	human	ensembl	69_37n	-1	known	silent	c.579	p.P193	0.563	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	PRRT1	HGNC	ENSG00000204314	20	0	0	9	6	37.5	-	-	-	T	32117479	C	T	32117479	2	4	529	1	0	0	0	0	0	0	0	1	12689	639	23	1		1	PRRT1	6	32117479	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2662286	32117479	138997588	82	47026										
C6orf10	0	genome.wustl.edu	37	chr6	32261367	32261367	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acctgggcttcctgtcctttCagtacaaccaacccactctt	5	16	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	32261367	32261367	C	T	SNP	C6orf10	ENST00000447241	human	ensembl	69_37n	-1	known	silent	c.1083	p.L361	0.002	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	570	0	0	437	201	31.5	-	-	-	T	32261367	C	T	32261367	2	4	529	1	0	0	0	0	0	0	0	1	2338	813	29	2		2	C6orf10	6	32261367	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	143888	32261367	138853700	83	47027										
DNAH8	0	genome.wustl.edu	37	chr6	38891783	38891783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acagacttgtaggtgatattCtgctgtgcacgggattcctt	11	8	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	38891783	38891783	C	G	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.10156	p.L3386V	0.702	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	336	0	0	270	115	29.87	-	-	-	G	38891783	C	G	38891783	3	3	529	1	0	0	0	0	1	0	0	0	4642	912	32	2	10430	2	DNAH8	6	38891783	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6630416	38891783	132223284	84	47028										
CUL7	0	genome.wustl.edu	37	chr6	43010724	43010724	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aggtcagaaaattgttcaccTggaaggaaggggcaggagca	15	6	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	43010724	43010724	T	G	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	splice_site	c.3715-2	e19-2	1.000	-	-	-	no_errors	CUL7	HGNC	ENSG00000044090	172	0	0	70	28	28.57	-	-	-	G	43010724	T	G	43010724	5	3	529	1	0	0	0	0	0	0	1	0	4091	1594	55	5	1667	5	CUL7	6	43010724	Splice_Site	SNP	T	TCGA-BH-A0DZ-01A-11W-A019-09	4118941	43010724	128104343	85	47029										
MEP1A	0	genome.wustl.edu	37	chr6	46806828	46806828	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acggctggcgtgatcttcttGaccttctccatcatcgccat	8	14	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	46806828	46806828	G	C	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	missense	c.2196	p.L732F	0.979	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	63	0	0	35	22	38.6	-	-	-	C	46806828	G	C	46806828	3	2	529	1	0	0	0	0	1	0	0	0	9546	1281	45	2	2250	2	MEP1A	6	46806828	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3796104	46806828	124308239	86	47030										
PKHD1	0	genome.wustl.edu	37	chr6	51503731	51503731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtagaagctaacataaccatCttgagtttctgcctgggtgc	10	9	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	51503731	51503731	C	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.11422	p.D3808H	0.995	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	418	0	0	472	224	32.18	-	-	-	G	51503731	C	G	51503731	3	3	529	1	0	0	0	0	1	0	0	0	12045	913	32	2	818	2	PKHD1	6	51503731	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4696903	51503731	119611336	87	47031										
PKHD1	0	genome.wustl.edu	37	chr6	51890550	51890550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccagactgtgaagagggatgGagcatccagacaggctcacg	14	10	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	51890550	51890550	G	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.4058	p.S1353C	0.726	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	216	0	0	148	71	32.42	-	-	-	C	51890550	G	C	51890550	3	2	529	1	0	0	0	0	1	0	0	0	12045	1174	41	2	8349	2	PKHD1	6	51890550	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	386819	51890550	119224517	88	47032										
FAM83B	0	genome.wustl.edu	37	chr6	54806423	54806423	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggaaagggcaggagatgcctCtgccccaagatttaacactg	12	10	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	54806423	54806423	C	T	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.2654	p.S885F	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	363	0	0	199	79	28.42	-	-	-	T	54806423	C	T	54806423	3	4	529	1	0	0	0	0	1	0	0	0	5679	913	32	2	2668	2	FAM83B	6	54806423	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2915873	54806423	116308644	89	47033										
MAP3K7	0	genome.wustl.edu	37	chr6	91260217	91260217	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggcagagttgctctgtccttCatctgaatactgacaaggat	10	9	3	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	91260217	91260217	C	T	SNP	MAP3K7	ENST00000369329	human	ensembl	69_37n	-1	known	missense	c.919	p.E307K	1.000	pirsf_MAPKKK7,superfamily_Kinase-like_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341	76	0	0	126	46	26.74	-	-	-	T	91260217	C	T	91260217	3	4	529	1	0	0	0	0	1	0	0	0	9326	835	29	2	937	2	MAP3K7	6	91260217	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	36453794	91260217	79854850	90	47034										
COQ3	0	genome.wustl.edu	37	chr6	99817588	99817588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctgggtgttcctggaccctgGatttcacagcataagctgca	11	11	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	99817588	99817588	G	A	SNP	COQ3	ENST00000254759	human	ensembl	69_37n	-1	known	missense	c.998	p.S333F	0.911	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_Mycolic_cyclopropane_synthase,pfam_UbiE/COQ5_MeTrFase,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_SAM-MeTfrase_NodS-related,tigrfam_UbiG_MeTrfase	-	no_errors	COQ3	HGNC	ENSG00000132423	180	0	0	221	104	32	-	-	-	A	99817588	G	A	99817588	3	1	529	1	0	0	0	0	1	0	0	0	3776	1174	41	2	115	2	COQ3	6	99817588	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8557371	99817588	71297479	91	47035										
HS3ST5	0	genome.wustl.edu	37	chr6	114379009	114379009	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gctgggctcttttcaattgtGatttgctgagggtaggaaaa	13	5	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	114379009	114379009	G	A	SNP	HS3ST5	ENST00000312719	human	ensembl	69_37n	-1	known	silent	c.453	p.I151	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST5	HGNC	ENSG00000249853	599	0	0	287	242	45.75	-	-	-	A	114379009	G	A	114379009	2	1	529	1	0	0	0	0	0	0	0	1	7419	1280	45	2		2	HS3ST5	6	114379009	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	14561421	114379009	56736058	92	47036										
ECHDC1	0	genome.wustl.edu	37	chr6	127648195	127648195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttcagatcagatcctgaagaGaaagtattttttgccccacg	8	9	2	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	127648195	127648195	G	C	SNP	ECHDC1	ENST00000531967	human	ensembl	69_37n	-1	known	missense	c.333	p.F111L	0.997	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC1	HGNC	ENSG00000093144	216	0	0	218	88	28.66	-	-	-	C	127648195	G	C	127648195	3	2	529	1	0	0	0	0	1	0	0	0	4928	933	33	2	606	2	ECHDC1	6	127648195	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	13269186	127648195	43466872	93	47037										
KIAA0408	0	genome.wustl.edu	37	chr6	127771455	127771455	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atcaatgatcttagcactttCattgatattgattttcctcc	4	9	3	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	127771455	127771455	C	T	SNP	KIAA0408	ENST00000483725	human	ensembl	69_37n	-1	novel	missense	c.178	p.E60K	0.204	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367	125	0	0	138	59	29.95	-	-	-	T	127771455	C	T	127771455	3	4	529	1	0	0	0	0	1	0	0	0	8226	835	29	2	1922	2	KIAA0408	6	127771455	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	123260	127771455	43343612	94	47038										
MAP3K5	0	genome.wustl.edu	37	chr6	136990511	136990511	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcctgactgtagtgttggctCagattcaaatgcctttttga	9	8	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	136990511	136990511	C	T	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.1276	p.E426K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	144	0	0	144	59	28.92	-	-	-	T	136990511	C	T	136990511	3	4	529	1	0	0	0	0	1	0	0	0	9324	835	29	2	2940	2	MAP3K5	6	136990511	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	9219056	136990511	34124556	95	47039										
SYNE1	0	genome.wustl.edu	37	chr6	152642474	152642474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtacttctccttctgttcttCtgccattttttcaatgttct	4	11	6	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	152642474	152642474	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.16135	p.E5379Q	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	75	0	0	54	23	29.87	-	-	-	G	152642474	C	G	152642474	3	3	529	1	0	0	0	0	1	0	0	0	15537	922	32	2	10583	2	SYNE1	6	152642474	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	15651963	152642474	18472593	96	47040										
FNDC1	0	genome.wustl.edu	37	chr6	159650875	159650875	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctttcatacgccccggctctCaaaccatttggagcaaagtc	7	14	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	159650875	159650875	C	G	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	silent	c.1209	p.L403	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	289	1	0.34	213	97	31.09	-	-	-	G	159650875	C	G	159650875	2	3	529	1	0	0	0	0	0	0	0	1	6014	813	29	2		2	FNDC1	6	159650875	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	7008401	159650875	11464192	97	47041										
MLLT4	0	genome.wustl.edu	37	chr6	168352759	168352759	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctggagtggcagttccagaaGagactccaggagtcgaagca	14	9	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	6	168352759	168352759	G	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.4704	p.K1568N	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	39	0	0	68	21	23.6	-	-	-	C	168352759	G	C	168352759	3	2	529	1	0	0	0	0	1	0	0	0	9700	933	33	2	4818	2	MLLT4	6	168352759	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8701884	168352759	2762308	98	47042										
FERD3L	0	genome.wustl.edu	37	chr7	19184707	19184707	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	taggtgatcacccttttcctCttggggcggcctaataggga	12	10	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	19184707	19184707	C	T	SNP	FERD3L	ENST00000275461	human	ensembl	69_37n	-1	known	silent	c.279	p.K93	1.000	pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FERD3L	HGNC	ENSG00000146618	77	0	0	52	23	30.67	-	-	-	T	19184707	C	T	19184707	2	4	529	1	0	0	0	0	0	0	0	1	5862	912	32	2		2	FERD3L	7	19184707	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		19184707	139953956	99	47043										
DNAH11	0	genome.wustl.edu	37	chr7	21813441	21813441	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atgttcacaccactgtaaatGaaatgagtaccagatattac	6	8	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	21813441	21813441	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.9181	p.E3061Q	0.760	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	50	0	0	34	19	35.19	-	-	-	C	21813441	G	C	21813441	3	2	529	1	0	0	0	0	1	0	0	0	4635	1291	45	2	9404	2	DNAH11	7	21813441	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2628734	21813441	137325222	100	47044										
TAX1BP1	0	genome.wustl.edu	37	chr7	27839637	27839637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaacttgcaaaaatggagctGaaatggaaagaacaagtgaa	11	4	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	27839637	27839637	G	A	SNP	TAX1BP1	ENST00000396319	human	ensembl	69_37n	1	known	silent	c.1692	p.L564	1.000	NULL	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	98	0	0	63	26	29.21	-	-	-	A	27839637	G	A	27839637	2	1	529	1	0	0	0	0	0	0	0	1	15686	1277	45	2		2	TAX1BP1	7	27839637	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	6026196	27839637	131299026	101	47045										
BBS9	0	genome.wustl.edu	37	chr7	33545131	33545131	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggcaatctgttccagtcattCaccaggctgaagagtgccac	10	12	3	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	33545131	33545131	C	T	SNP	BBS9	ENST00000434373	human	ensembl	69_37n	1	known	missense	c.871	p.H291Y	0.397	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BBS9	HGNC	ENSG00000122507	193	0	0	155	64	29.09	-	-	-	T	33545131	C	T	33545131	3	4	529	1	0	0	0	0	1	0	0	0	1346	825	29	2	2246	2	BBS9	7	33545131	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	5705494	33545131	125593532	102	47046										
C7orf10	0	genome.wustl.edu	37	chr7	40220545	40220545	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atgttttctctgttttgccaGatatgaacaatataaagcca	6	7	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	40220545	40220545	G	C	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	1	known	splice_site	c.122-1	e2-1	0.995	-	-	-	no_errors	C7orf10	HGNC	ENSG00000175600	278	0	0	316	126	28.44	-	-	-	C	40220545	G	C	40220545	5	2	529	1	0	0	0	0	0	0	1	0	2399	956	33	2	127	2	C7orf10	7	40220545	Splice_Site	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	6675414	40220545	118918118	103	47047										
POM121	0	genome.wustl.edu	37	chr7	72397433	72397433	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtactgagtgccctcaaagaGaaggagaagaaaaggacagt	13	6	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	72397433	72397433	G	C	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.954	p.E318D	1.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	223	0	0	81	42	34.15	-	-	-	C	72397433	G	C	72397433	3	2	529	1	0	0	0	0	1	0	0	0	12313	933	33	2	165	2	POM121	7	72397433	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	32176888	72397433	86741230	104	47048										
RELN	0	genome.wustl.edu	37	chr7	103322585	103322585	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgtaggctggctctcaaattCttctgaccattgctcttgaa	8	10	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	103322585	103322585	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.1267	p.E423K	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	263	0	0	166	126	43.15	-	-	-	T	103322585	C	T	103322585	3	4	529	1	0	0	0	0	1	0	0	0	13303	922	32	2	9335	2	RELN	7	103322585	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	30925152	103322585	55816078	105	47049										
DOCK4	0	genome.wustl.edu	37	chr7	111575671	111575671	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tggatttggtaccactcactCtctgtgttacacctatgaaa	7	10	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	7	111575671	111575671	C	T	SNP	DOCK4	ENST00000445943	human	ensembl	69_37n	-1	novel	missense	c.953	p.R318K	1.000	NULL	pfam_DOCK,superfamily_SH3_domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK4	HGNC	ENSG00000128512	305	0	0	144	26	15.29	-	-	-	T	111575671	C	T	111575671	3	4	529	1	0	0	0	0	1	0	0	0	4724	912	32	2	5074	2	DOCK4	7	111575671	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	8253086	111575671	47562992	106	47050										
CHPF2	0	genome.wustl.edu	37	chr7	150932659	150932659	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gagtggcttggacgctgcctCattgactctctgggcgtcgg	15	11	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	7	150932659	150932659	C	T	SNP	CHPF2	ENST00000035307	human	ensembl	69_37n	1	known	silent	c.789	p.L263	1.000	pfam_Chond_GalNAc,pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100	36	0	0	6	12	66.67	-	-	-	T	150932659	C	T	150932659	2	4	529	1	0	0	0	0	0	0	0	1	3398	813	29	2		2	CHPF2	7	150932659	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	39356988	150932659	8206004	107	47051										
PHYHIP	0	genome.wustl.edu	37	chr8	22084524	22084524	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggcactgccttggccacgagCttggtggggacgtcctgaga	16	11	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	22084524	22084524	C	A	SNP	PHYHIP	ENST00000454243	human	ensembl	69_37n	-1	known	missense	c.180	p.K60N	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490	100	0	0	30	8	21.05	-	-	-	A	22084524	C	A	22084524	3	1	529	1	0	0	0	0	1	0	0	0	11940	796	28	4	824	4	PHYHIP	8	22084524	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		22084524	124279498	108	47052										
EGR3	0	genome.wustl.edu	37	chr8	22548021	22548022	+	Frame_Shift_Ins	INS	-	-	G													0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	accacgggggccagcgacacINSggggggcgccgaggatgcag							TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	22548021	22548022	-	G	INS	EGR3	ENST00000317216	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1129_1128	p.V376fs	0.964:0.017	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388	27	0	0	13	3	18.75	-	-	-	G	22548022	-	G	22548021	7	5	529	1	0	1	1	0	0	0	0	0	5008	536	19	0	38	0	EGR3	8	22548021	Frame_Shift_Ins	INS	-	TCGA-BH-A0DZ-01A-11W-A019-09	463497	22548021	123816001	109	47053										
WRN	0	genome.wustl.edu	37	chr8	30982427	30982427	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aattttgtcttgggtagaatCatcttgtctcattttgagga	9	5	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	30982427	30982427	C	T	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	silent	c.2736	p.I912	1.000	tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	178	1	0.56	189	90	32.26	-	-	-	T	30982427	C	T	30982427	2	4	529	1	0	0	0	0	0	0	0	1	17499	816	29	2		2	WRN	8	30982427	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	8434406	30982427	115381595	110	47054										
UNC5D	0	genome.wustl.edu	37	chr8	35542203	35542203	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgcaccaacccagctcctctCaatggtggggccttttgtga	10	13	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	35542203	35542203	C	G	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	silent	c.855	p.L285	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	303	0	0	106	43	28.67	-	-	-	G	35542203	C	G	35542203	2	3	529	1	0	0	0	0	0	0	0	1	17092	813	29	2		2	UNC5D	8	35542203	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4559776	35542203	110821819	111	47055										
CHD7	0	genome.wustl.edu	37	chr8	61654206	61654206	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gctgacacattttgatcactAtaatcagtatgaacaacaaa	5	8	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	8	61654206	61654206	A	G	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.215	p.Y72C	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	60	0	0	57	17	22.97	-	-	-	G	61654206	A	G	61654206	3	3	529	1	0	0	0	0	1	0	0	0	3359	449	16	5	217	5	CHD7	8	61654206	Missense_Mutation	SNP	A	TCGA-BH-A0DZ-01A-11W-A019-09	26112003	61654206	84709816	112	47056										
VPS13B	0	genome.wustl.edu	37	chr8	100866400	100866400	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctctctccttctcggtgtttGaaagaggacccatcttcacc	7	14	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	100866400	100866400	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.10858	p.E3620K	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	128	0	0	126	93	42.47	-	-	-	A	100866400	G	A	100866400	3	1	529	1	0	0	0	0	1	0	0	0	17287	1291	45	2	11270	2	VPS13B	8	100866400	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	39212194	100866400	45497622	113	47057										
ABRA	0	genome.wustl.edu	37	chr8	107781891	107781891	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtgggctcctcctgctccatCactctccagcccttggttag	9	16	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	107781891	107781891	C	T	SNP	ABRA	ENST00000311955	human	ensembl	69_37n	-1	known	silent	c.528	p.V176	0.999	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	501	0	0	276	108	28.12	-	-	-	T	107781891	C	T	107781891	2	4	529	1	0	0	0	0	0	0	0	1	100	813	29	2		2	ABRA	8	107781891	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6915491	107781891	38582131	114	47058										
COL22A1	0	genome.wustl.edu	37	chr8	139606409	139606409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gagatgacttcatgtacgccGggggcatctgggccaggagg	17	9	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	8	139606409	139606409	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.4466	p.P1489L	0.998	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	58	0	0	34	48	58.54	-	-	-	A	139606409	G	A	139606409	3	1	529	1	0	0	0	0	1	0	0	0	3711	1116	39	1	426	1	COL22A1	8	139606409	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	31824518	139606409	6757613	115	47059										
RANBP6	0	genome.wustl.edu	37	chr9	6015088	6015088	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gatatccaaatcatgccgctCttgggtcccaaaaatcccag	7	13	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	6015088	6015088	C	G	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.520	p.E174Q	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	86	0	0	47	25	34.72	-	-	-	G	6015088	C	G	6015088	3	3	529	1	0	0	0	0	1	0	0	0	13114	922	32	2	2801	2	RANBP6	9	6015088	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		6015088	135198343	116	47060										
IFNA1	0	genome.wustl.edu	37	chr9	21441024	21441024	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgtcagagcagaaatcatgaGatccctctctttatcaacaa	6	10	4	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	21441024	21441024	G	A	SNP	IFNA1	ENST00000276927	human	ensembl	69_37n	1	known	missense	c.518	p.R173K	0.008	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA1	HGNC	ENSG00000197919	492	0	0	395	151	27.66	-	-	-	A	21441024	G	A	21441024	3	1	529	1	0	0	0	0	1	0	0	0	7585	942	33	2	520	2	IFNA1	9	21441024	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	15425936	21441024	119772407	117	47061										
CCL21	0	genome.wustl.edu	37	chr9	34709557	34709557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tggaggcccccctgtccttcCtgcagccctgggctggtttc	12	16	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	34709557	34709557	C	T	SNP	CCL21	ENST00000259607	human	ensembl	69_37n	-1	known	missense	c.311	p.R104K	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL21	HGNC	ENSG00000137077	109	0	0	97	36	26.87	-	-	-	T	34709557	C	T	34709557	3	4	529	1	0	0	0	0	1	0	0	0	2920	681	24	4	101	4	CCL21	9	34709557	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	13268533	34709557	106503874	118	47062										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69421946	69421946	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaaaggaaagagaaacaataTaagaaagaagttgaagcaaa	10	2	0	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	9	69421946	69421946	T	C	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	silent	c.1410	p.Y470	0.129	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	22	0	0	23	5	17.86	-	-	-	C	69421946	T	C	69421946	2	2	529	1	0	0	0	0	0	0	0	1	650	1413	49	5		5	ANKRD20A4	9	69421946	Silent	SNP	T	TCGA-BH-A0DZ-01A-11W-A019-09	34712389	69421946	71791485	119	47063										
PCSK5	0	genome.wustl.edu	37	chr9	78804645	78804645	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cttaggaatgtgtcaaatggGagccatttgcaaggatggtg	14	5	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	78804645	78804645	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.2609	p.G870A	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	146	0	0	87	30	25.64	-	-	-	C	78804645	G	C	78804645	3	2	529	1	0	0	0	0	1	0	0	0	11676	1174	41	2	2687	2	PCSK5	9	78804645	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	9382699	78804645	62408786	120	47064										
RNF20	0	genome.wustl.edu	37	chr9	104313984	104313984	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agcgagatgaggttagtcttCataagaagctgaggactgaa	13	5	2	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	104313984	104313984	C	T	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.1291	p.H431Y	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	156	0	0	138	57	29.23	-	-	-	T	104313984	C	T	104313984	3	4	529	1	0	0	0	0	1	0	0	0	13559	826	29	2	1329	2	RNF20	9	104313984	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	25509339	104313984	36899447	121	47065										
CERCAM	0	genome.wustl.edu	37	chr9	131196437	131196437	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gaggatgacgtgcgctttgaGagcaacttcagggggcggct	17	8	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	131196437	131196437	G	A	SNP	CERCAM	ENST00000372838	human	ensembl	69_37n	1	known	silent	c.1260	p.E420	1.000	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123	43	0	0	23	10	30.3	-	-	-	A	131196437	G	A	131196437	2	1	529	1	0	0	0	0	0	0	0	1	3295	933	33	2		2	CERCAM	9	131196437	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	26882453	131196437	10016994	122	47066										
PTGDS	0	genome.wustl.edu	37	chr9	139873688	139873688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cctacaggaaaaaccagtgtGagacccgaaccatgctgctg	10	12	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	9	139873688	139873688	G	A	SNP	PTGDS	ENST00000224167	human	ensembl	69_37n	1	known	missense	c.268	p.E90K	0.977	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth	-	no_errors	PTGDS	HGNC	ENSG00000107317	19	0	0	4	5	55.56	-	-	-	A	139873688	G	A	139873688	3	1	529	1	0	0	0	0	1	0	0	0	12822	1291	45	2	278	2	PTGDS	9	139873688	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8677251	139873688	1339743	123	47067										
ASAH2	0	genome.wustl.edu	37	chr10	52003088	52003088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtgaggatgccctgtgcattCtggccggatttgccatagcc	13	11	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	52003088	52003088	C	T	SNP	ASAH2	ENST00000395526	human	ensembl	69_37n	-1	known	silent	c.384	p.Q128	0.999	pfam_Ceramidase_alk	pfam_Ceramidase_alk	-	no_errors	ASAH2	HGNC	ENSG00000188611	380	0	0	202	80	28.37	-	-	-	T	52003088	C	T	52003088	2	4	529	1	0	0	0	0	0	0	0	1	1011	912	32	2		2	ASAH2	10	52003088	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		52003088	83531659	124	47068										
NUDT13	0	genome.wustl.edu	37	chr10	74874153	74874153	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tattgtggaatagcttgcagGagaaaatttttttggtgcta	11	3	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	74874153	74874153	G	C	SNP	NUDT13	ENST00000357321	human	ensembl	69_37n	1	known	missense	c.30	p.R10S	0.823	NULL	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321	44	0	0	42	17	28.81	-	-	-	C	74874153	G	C	74874153	3	2	529	1	0	0	0	0	1	0	0	0	10802	1165	41	2	32	2	NUDT13	10	74874153	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	22871065	74874153	60660594	125	47069										
FUT11	0	genome.wustl.edu	37	chr10	75532727	75532727	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cgcggctacgcgccgctgctCtatctgcagtcacactgcga	11	16	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	75532727	75532727	C	G	SNP	FUT11	ENST00000372841	human	ensembl	69_37n	1	known	silent	c.636	p.L212	0.994	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT11	HGNC	ENSG00000196968	38	0	0	16	8	33.33	-	-	-	G	75532727	C	G	75532727	2	3	529	1	0	0	0	0	0	0	0	1	6152	900	32	2		2	FUT11	10	75532727	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	658574	75532727	60002020	126	47070										
IFIT2	0	genome.wustl.edu	37	chr10	91066299	91066299	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caccatctcagaacgccattGaccctctgaggcaagccatt	7	15	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	91066299	91066299	G	A	SNP	IFIT2	ENST00000371826	human	ensembl	69_37n	1	known	missense	c.586	p.D196N	0.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922	205	1	0.48	194	86	30.6	-	-	-	A	91066299	G	A	91066299	3	1	529	1	0	0	0	0	1	0	0	0	7577	1290	45	2	592	2	IFIT2	10	91066299	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	15533572	91066299	44468448	127	47071										
KIF11	0	genome.wustl.edu	37	chr10	94366119	94366119	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tacgaactggaggattggctGacaagagctcaaggaaaaca	12	7	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	94366119	94366119	G	A	SNP	KIF11	ENST00000260731	human	ensembl	69_37n	1	known	missense	c.175	p.D59N	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160	69	0	0	73	34	31.78	-	-	-	A	94366119	G	A	94366119	3	1	529	1	0	0	0	0	1	0	0	0	8324	1290	45	2	181	2	KIF11	10	94366119	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3299820	94366119	41168628	128	47072										
AVPI1	0	genome.wustl.edu	37	chr10	99439583	99439583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cgtcctggaagatgttggccGaggcctgcttgcggccccgg	16	13	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	99439583	99439583	G	A	SNP	AVPI1	ENST00000370626	human	ensembl	69_37n	-1	known	missense	c.80	p.S27L	0.764	NULL	NULL	-	no_errors	AVPI1	HGNC	ENSG00000119986	14	0	0	13	8	38.1	-	-	-	A	99439583	G	A	99439583	3	1	529	1	0	0	0	0	1	0	0	0	1234	1059	37	1	371	1	AVPI1	10	99439583	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	5073464	99439583	36095164	129	47073										
SFXN2	0	genome.wustl.edu	37	chr10	104486423	104486423	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gacctgtctggctttaacatCgatgccccccgttgggacca	10	14	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	104486423	104486423	C	T	SNP	SFXN2	ENST00000369893	human	ensembl	69_37n	1	known	silent	c.30	p.I10	0.987	tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398	145	0	0	79	33	29.46	-	-	-	T	104486423	C	T	104486423	2	4	529	1	0	0	0	0	0	0	0	1	14283	874	31	1		1	SFXN2	10	104486423	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	5046840	104486423	31048324	130	47074										
FAM160B1	0	genome.wustl.edu	37	chr10	116593004	116593004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttgtttagatgataaagcccCagtgaccgatacaaatattc	7	8	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	10	116593004	116593004	C	T	SNP	FAM160B1	ENST00000369248	human	ensembl	69_37n	1	known	missense	c.137	p.P46L	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553	108	0	0	104	40	27.78	-	-	-	T	116593004	C	T	116593004	3	4	529	1	0	0	0	0	1	0	0	0	5510	594	21	4	147	4	FAM160B1	10	116593004	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	12106581	116593004	18941743	131	47075										
OR56A1	0	genome.wustl.edu	37	chr11	6048366	6048366	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cacaggagagcctggacacaGacaagttggcacagatgcag	13	10	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	6048366	6048366	G	C	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	missense	c.569	p.S190C	0.128	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	378	0	0	187	147	44.01	-	-	-	C	6048366	G	C	6048366	3	2	529	1	0	0	0	0	1	0	0	0	11206	942	33	2	391	2	OR56A1	11	6048366	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		6048366	128958150	132	47076										
FADS2	0	genome.wustl.edu	37	chr11	61583860	61583860	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aggcctctctcccgccttttCatcccgcatccgcaggacac	7	19	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	61583860	61583860	C	T	SNP	FADS2	ENST00000257261	human	ensembl	69_37n	1	known	missense	c.103	p.H35Y	0.001	pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	-	no_errors	FADS2	HGNC	ENSG00000134824	30	0	0	8	10	55.56	-	-	-	T	61583860	C	T	61583860	3	4	529	1	0	0	0	0	1	0	0	0	5406	841	29	2		2	FADS2	11	61583860	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	55535494	61583860	73422656	133	47077										
CABP2	0	genome.wustl.edu	37	chr11	67287358	67287358	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cgctcccccagcagggccttGagggccgcccggagctcgcc	14	19	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	67287358	67287358	G	A	SNP	CABP2	ENST00000294288	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CABP2	HGNC	ENSG00000167791	60	0	0	38	10	20.83	-	-	-	A	67287358	G	A	67287358	2	1	529	1	0	0	0	0	0	0	0	1	2557	1277	45	2		2	CABP2	11	67287358	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	5703498	67287358	67719158	134	47078										
ALDH3B2	0	genome.wustl.edu	37	chr11	67431978	67431978	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atgggcaggatgggcccgaaGatctcctcctgcatcacagg	13	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	67431978	67431978	G	C	SNP	ALDH3B2	ENST00000349015	human	ensembl	69_37n	-1	known	missense	c.762	p.I254M	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746	70	0	0	33	11	25	-	-	-	C	67431978	G	C	67431978	3	2	529	1	0	0	0	0	1	0	0	0	500	932	33	2	407	2	ALDH3B2	11	67431978	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	144620	67431978	67574538	135	47079										
ARHGAP20	0	genome.wustl.edu	37	chr11	110450435	110450435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgagttggcttctggaacacCagaagcatgtgggggtggct	16	7	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	110450435	110450435	C	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	69_37n	-1	known	missense	c.3235	p.G1079S	0.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727	108	0	0	36	54	59.34	-	-	-	T	110450435	C	T	110450435	3	4	529	1	0	0	0	0	1	0	0	0	872	594	21	4	344	4	ARHGAP20	11	110450435	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	43018457	110450435	24556081	136	47080										
OR8D1	0	genome.wustl.edu	37	chr11	124180243	124180243	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gccagcactagcagtgagcaGacccatgaggacatgatcgc	12	12	0	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	124180243	124180243	G	C	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	silent	c.420	p.V140	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	201	0	0	106	56	34.57	-	-	-	C	124180243	G	C	124180243	2	2	529	1	0	0	0	0	0	0	0	1	11304	929	33	2		2	OR8D1	11	124180243	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	13729808	124180243	10826273	137	47081										
SRPR	0	genome.wustl.edu	37	chr11	126136689	126136689	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	catacccctcccatgcttctGaatgaactcctcgcgcttcc	5	18	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	126136689	126136689	G	A	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	nonsense	c.655	p.Q219*	1.000	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	246	0	0	170	54	24.11	-	-	-	A	126136689	G	A	126136689	4	1	529	1	0	0	0	0	0	1	0	0	15253	1299	45	2	1301	2	SRPR	11	126136689	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1956446	126136689	8869827	138	47082			1	83		3	3	1236	N	G_C	4.936725e-05
SRPR	0	genome.wustl.edu	37	chr11	126137590	126137590	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tctacatatgtcagtgtcagGatcttctgaaaaccaacctg	7	10	5	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	126137590	126137590	G	C	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.219	p.I73M	1.000	pfam_Sig_recog_particle_rcpt_asu_N,superfamily_Longin-like_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	127	0	0	42	18	30	-	-	-	C	126137590	G	C	126137590	3	2	529	1	0	0	0	0	1	0	0	0	15253	1164	41	2	1745	2	SRPR	11	126137590	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	901	126137590	8868926	139	47083			1	83		3	3	1236	N	G_C	4.936725e-05
SRPR	0	genome.wustl.edu	37	chr11	126137924	126137924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caccagctcaaactggttgtCcagtttatacttgagtgtga	9	9	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	11	126137924	126137924	C	T	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.175	p.D59N	1.000	pfam_Sig_recog_particle_rcpt_asu_N,superfamily_Longin-like_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	110	0	0	50	12	19.35	-	-	-	T	126137924	C	T	126137924	3	4	529	1	0	0	0	0	1	0	0	0	15253	855	30	2	1793	2	SRPR	11	126137924	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	334	126137924	8868592	140	47084			1	83		3	3	1236	N	G_C	4.936725e-05
CLSTN3	0	genome.wustl.edu	37	chr12	7294698	7294698	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccagaggagaagaacaaagaGaaggaaaagggagacaacag	14	5	0	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	7294698	7294698	G	C	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	missense	c.1503	p.E501D	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	401	0	0	279	113	28.46	-	-	-	C	7294698	G	C	7294698	3	2	529	1	0	0	0	0	1	0	0	0	3593	933	33	2	1541	2	CLSTN3	12	7294698	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		7294698	126557197	141	47085										
C12orf36	0	genome.wustl.edu	37	chr12	13529169	13529169	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cccactcacctccacagcctCtgagtccctccaagcaggtc	6	20	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	13529169	13529169	C	G	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	missense	c.171	p.Q57H	0.001	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	231	0	0	116	82	41.41	-	-	-	G	13529169	C	G	13529169	3	3	529	1	0	0	0	0	1	0	0	0	1695	912	32	2	253	2	C12orf36	12	13529169	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	6234471	13529169	120322726	142	47086										
DDX11	0	genome.wustl.edu	37	chr12	31244703	31244703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	catgcggccactcggcaggcCgcgggcatccggctgcagga	16	15	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	12	31244703	31244703	C	T	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	silent	c.1140	p.A380	0.617	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	26	0	0	12	4	25	-	-	-	T	31244703	C	T	31244703	2	4	529	1	0	0	0	0	0	0	0	1	4374	639	23	1		1	DDX11	12	31244703	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	17715534	31244703	102607192	143	47087										
PFKM	0	genome.wustl.edu	37	chr12	48539433	48539433	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cgagattgacttggacacttCagaccatgcccacctggagc	10	13	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	48539433	48539433	C	A	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	nonsense	c.2285	p.S762*	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	141	1	0.7	86	15	14.85	-	-	-	A	48539433	C	A	48539433	4	1	529	1	0	0	0	0	0	1	0	0	11839	838	29	2	2592	2	PFKM	12	48539433	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	17294730	48539433	85312462	144	47088										
C12orf66	0	genome.wustl.edu	37	chr12	64609478	64609478	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctggagctgtattttttcatGatggcatccaaaaggccaac	9	9	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	64609478	64609478	G	A	SNP	C12orf66	ENST00000398055	human	ensembl	69_37n	-1	known	silent	c.501	p.I167	1.000	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206	75	0	0	66	28	29.79	-	-	-	A	64609478	G	A	64609478	2	1	529	1	0	0	0	0	0	0	0	1	1721	1280	45	2		2	C12orf66	12	64609478	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	16070045	64609478	69242417	145	47089										
NAV3	0	genome.wustl.edu	37	chr12	78598796	78598796	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggagctcagcaactctgcctCaggagagcccagccttactt	10	14	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	78598796	78598796	C	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	nonsense	c.6916	p.Q2306*	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	100	0	0	70	30	30	-	-	-	T	78598796	C	T	78598796	4	4	529	1	0	0	0	0	0	1	0	0	10257	827	29	2	7000	2	NAV3	12	78598796	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	13989318	78598796	55253099	146	47090										
NR1H4	0	genome.wustl.edu	37	chr12	100928777	100928777	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggtcgtgacttgcgacaagtGacctcgacaacaaagtcatg	11	10	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	100928777	100928777	G	C	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	silent	c.738	p.V246	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	114	0	0	62	20	24.39	-	-	-	C	100928777	G	C	100928777	2	2	529	1	0	0	0	0	0	0	0	1	10692	1277	45	2		2	NR1H4	12	100928777	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	22329981	100928777	32923118	147	47091										
NFYB	0	genome.wustl.edu	37	chr12	104517031	104517031	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aatttctgaaggtataatttCagaggttccacataactgtc	7	7	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	104517031	104517031	C	A	SNP	NFYB	ENST00000240055	human	ensembl	69_37n	-1	known	silent	c.402	p.L134	1.000	superfamily_Histone-fold,prints_Transcrpt_fac_CBFA/NFYB_topo	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	NFYB	HGNC	ENSG00000120837	139	0	0	72	38	34.55	-	-	-	A	104517031	C	A	104517031	2	1	529	1	0	0	0	0	0	0	0	1	10462	813	29	2		2	NFYB	12	104517031	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3588254	104517031	29334864	148	47092										
DTX1	0	genome.wustl.edu	37	chr12	113515419	113515419	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcgctaggcttctgctacctCatctacttcaacagcatgtc	6	14	4	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	12	113515419	113515419	C	T	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	silent	c.450	p.L150	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	31	0	0	9	7	41.18	-	-	-	T	113515419	C	T	113515419	2	4	529	1	0	0	0	0	0	0	0	1	4828	813	29	2		2	DTX1	12	113515419	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	8998388	113515419	20336476	149	47093										
PDS5B	0	genome.wustl.edu	37	chr13	33252979	33252979	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tatattttatcaggtttaatGatatccatgtaccaatccgc	5	8	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	33252979	33252979	G	A	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.970	p.D324N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	133	0	0	159	73	31.47	-	-	-	A	33252979	G	A	33252979	3	1	529	1	0	0	0	0	1	0	0	0	11765	1290	45	2	1004	2	PDS5B	13	33252979	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		33252979	81916899	150	47094										
ELF1	0	genome.wustl.edu	37	chr13	41515065	41515065	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tggttttctcacctaatactCtgaacggaagaatttaatgt	7	7	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	41515065	41515065	C	G	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	missense	c.1248	p.Q416H	0.995	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	122	0	0	119	60	33.52	-	-	-	G	41515065	C	G	41515065	3	3	529	1	0	0	0	0	1	0	0	0	5090	912	32	2	619	2	ELF1	13	41515065	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	8262086	41515065	73654813	151	47095										
ELF1	0	genome.wustl.edu	37	chr13	41515219	41515219	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcactgtcctcaaaacttctGatggttgtgcaacttccaca	7	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	41515219	41515219	G	C	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	nonsense	c.1094	p.S365*	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	203	0	0	239	72	23.15	-	-	-	C	41515219	G	C	41515219	4	2	529	1	0	0	0	0	0	1	0	0	5090	1294	45	2	773	2	ELF1	13	41515219	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	154	41515219	73654659	152	47096										
MYCBP2	0	genome.wustl.edu	37	chr13	77692650	77692650	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cctgcagtgggtaaaacagtCaaaactacaactcgttattc	7	10	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	77692650	77692650	C	G	SNP	MYCBP2	ENST00000360084	human	ensembl	69_37n	-1	known	missense	c.420	p.L140F	1.000	NULL	NULL	-	no_stop_codon	MYCBP2	HGNC	ENSG00000005810	28	0	0	28	12	30	-	-	-	G	77692650	C	G	77692650	3	3	529	1	0	0	0	0	1	0	0	0	10090	841	29	2		2	MYCBP2	13	77692650	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	36177431	77692650	37477228	153	47097										
UGGT2	0	genome.wustl.edu	37	chr13	96589256	96589256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atttttagttctttaatattCatctcttcatgtttaaaggg	5	5	4	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	96589256	96589256	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.1899	p.M633I	0.457	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	174	0	0	196	74	27.41	-	-	-	T	96589256	C	T	96589256	3	4	529	1	0	0	0	0	1	0	0	0	17039	826	29	2	2743	2	UGGT2	13	96589256	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	18896606	96589256	18580622	154	47098										
OXGR1	0	genome.wustl.edu	37	chr13	97639086	97639086	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgttgagcagacagcctgctGaaagttgtcgctgaccacca	11	11	0	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	97639086	97639086	G	A	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	nonsense	c.928	p.Q310*	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	225	1	0.44	176	78	30.71	-	-	-	A	97639086	G	A	97639086	4	1	529	1	0	0	0	0	0	1	0	0	11405	1299	45	2	89	2	OXGR1	13	97639086	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1049830	97639086	17530792	155	47099										
NALCN	0	genome.wustl.edu	37	chr13	101910796	101910796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cggtggagagctgcttacctCcgccaggtagaactcgtcgt	13	12	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	13	101910796	101910796	C	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.1264	p.E422K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	78	0	0	47	29	38.16	-	-	-	T	101910796	C	T	101910796	3	4	529	1	0	0	0	0	1	0	0	0	10220	864	30	2	4088	2	NALCN	13	101910796	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4271710	101910796	13259082	156	47100										
TPPP2	0	genome.wustl.edu	37	chr14	21499252	21499252	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagaagcgcttcaaagggaaGagtccagatgaagtcctgga	13	8	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	21499252	21499252	G	A	SNP	TPPP2	ENST00000495665	human	ensembl	69_37n	1	known	missense	c.230	p.R77K	0.974	pfam_P25-alpha	pfam_P25-alpha	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TPPP2	HGNC	ENSG00000179636	445	0	0	174	67	27.8	-	-	-	A	21499252	G	A	21499252	3	1	529	1	0	0	0	0	1	0	0	0	16510	933	33	2	261	2	TPPP2	14	21499252	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		21499252	85850288	157	47101										
PSMB11	0	genome.wustl.edu	37	chr14	23512055	23512055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcctacgccctggctcgctgCgccgtggcccacgccaccca	11	21	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	23512055	23512055	C	T	SNP	PSMB11	ENST00000408907	human	ensembl	69_37n	1	known	silent	c.621	p.C207	0.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028	58	0	0	20	10	33.33	-	-	-	T	23512055	C	T	23512055	2	4	529	1	0	0	0	0	0	0	0	1	12756	776	27	1		1	PSMB11	14	23512055	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2012803	23512055	83837485	158	47102										
RABGGTA	0	genome.wustl.edu	37	chr14	24740088	24740088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gactggtatagcttcagcttCtgctctcgctctagcctttt	8	12	4	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	24740088	24740088	C	T	SNP	RABGGTA	ENST00000216840	human	ensembl	69_37n	-1	known	silent	c.69	p.Q23	1.000	NULL	pfam_Prenyl_trans_a,pfam_RabGGT_asu_insert-domain,pfam_Leu-rich_rpt,superfamily_RabGGT_asu_insert-domain,pfscan_Prenyl_trans_a	-	no_errors	RABGGTA	HGNC	ENSG00000100949	19	0	0	13	10	43.48	-	-	-	T	24740088	C	T	24740088	2	4	529	1	0	0	0	0	0	0	0	1	13050	912	32	2		2	RABGGTA	14	24740088	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1228033	24740088	82609452	159	47103										
SOS2	0	genome.wustl.edu	37	chr14	50623790	50623790	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gattggctgctcgcctttctCtattgccaatttgtctgcgt	9	11	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	50623790	50623790	C	G	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	missense	c.1984	p.E662Q	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	34	0	0	26	17	39.53	-	-	-	G	50623790	C	G	50623790	3	3	529	1	0	0	0	0	1	0	0	0	15026	922	32	2	2062	2	SOS2	14	50623790	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	25883702	50623790	56725750	160	47104										
ZFYVE26	0	genome.wustl.edu	37	chr14	68229412	68229412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aacgcccagttggtagtactCggcttccaaaagctggttcc	10	12	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	68229412	68229412	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.6136	p.E2046K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	133	0	0	86	43	33.33	-	-	-	T	68229412	C	T	68229412	3	4	529	1	0	0	0	0	1	0	0	0	17764	893	31	1	1523	1	ZFYVE26	14	68229412	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	17605622	68229412	39120128	161	47105										
SIPA1L1	0	genome.wustl.edu	37	chr14	72176230	72176230	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtgaagtaatctccatggcaGatcggactttggagacagag	13	7	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	72176230	72176230	G	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	missense	c.4120	p.D1374H	0.999	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	96	0	0	49	25	33.78	-	-	-	C	72176230	G	C	72176230	3	2	529	1	0	0	0	0	1	0	0	0	14418	942	33	2	4174	2	SIPA1L1	14	72176230	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3946818	72176230	35173310	162	47106										
MLH3	0	genome.wustl.edu	37	chr14	75515335	75515335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	taaaaacattttcactccttCctgaatgcaaaacaagagag	5	9	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	75515335	75515335	C	T	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.1024	p.E342K	1.000	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	166	0	0	127	57	30.98	-	-	-	T	75515335	C	T	75515335	3	4	529	1	0	0	0	0	1	0	0	0	9689	864	30	2	3385	2	MLH3	14	75515335	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3339105	75515335	31834205	163	47107										
SPTLC2	0	genome.wustl.edu	37	chr14	77987865	77987865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atagatgatgaagcccatctCtttcaggcgtctcctgaaat	8	10	3	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	77987865	77987865	C	G	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.1363	p.E455Q	0.988	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	151	0	0	87	32	26.67	-	-	-	G	77987865	C	G	77987865	3	3	529	1	0	0	0	0	1	0	0	0	15215	922	32	2	337	2	SPTLC2	14	77987865	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2472530	77987865	29361675	164	47108										
SNW1	0	genome.wustl.edu	37	chr14	78198836	78198836	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	taacaaaccaaccttccgatCagcaatgtagagggcttctg	8	11	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	78198836	78198836	C	A	SNP	SNW1	ENST00000261531	human	ensembl	69_37n	-1	known	missense	c.883	p.D295Y	1.000	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603	208	1	0.48	130	48	26.97	-	-	-	A	78198836	C	A	78198836	3	1	529	1	0	0	0	0	1	0	0	0	14968	826	29	2	751	2	SNW1	14	78198836	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	210971	78198836	29150704	165	47109										
TRIP11	0	genome.wustl.edu	37	chr14	92471025	92471025	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caaaacagcaaataccttttCtctttccatagcataagcct	3	12	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	14	92471025	92471025	C	T	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.3295	p.E1099K	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	150	0	0	181	57	23.95	-	-	-	T	92471025	C	T	92471025	3	4	529	1	0	0	0	0	1	0	0	0	16651	922	32	2	2688	2	TRIP11	14	92471025	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	14272189	92471025	14878515	166	47110										
ATP10A	0	genome.wustl.edu	37	chr15	25928589	25928589	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcaatcatggtagatgcagaGaagccacagaaaaactggaa	10	7	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	15	25928589	25928589	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	silent	c.3336	p.F1112	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	45	0	0	50	24	32.43	-	-	-	A	25928589	G	A	25928589	2	1	529	1	0	0	0	0	0	0	0	1	1120	933	33	2		2	ATP10A	15	25928589	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		25928589	76602803	167	47111										
MYEF2	0	genome.wustl.edu	37	chr15	48443305	48443305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atttaaacctacttattccaGatcctactggacccatgtta	4	11	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	15	48443305	48443305	G	C	SNP	MYEF2	ENST00000324324	human	ensembl	69_37n	-1	known	missense	c.1370	p.S457C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177	157	0	0	196	93	32.07	-	-	-	C	48443305	G	C	48443305	3	2	529	1	0	0	0	0	1	0	0	0	10096	942	33	2	448	2	MYEF2	15	48443305	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	22514716	48443305	54088087	168	47112										
BBS4	0	genome.wustl.edu	37	chr15	73024024	73024024	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cattttctcagtgcggccatCaacttccagccaaagatggg	9	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	15	73024024	73024024	C	T	SNP	BBS4	ENST00000566197	human	ensembl	69_37n	1	novel	missense	c.2	p.S1L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BBS4	HGNC	ENSG00000140463	200	0	0	129	52	28.73	-	-	-	T	73024024	C	T	73024024	3	4	529	1	0	0	0	0	1	0	0	0	1343	816	29	2	1039	2	BBS4	15	73024024	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	24580719	73024024	29507368	169	47113										
ZNF592	0	genome.wustl.edu	37	chr15	85326354	85326354	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caatctccagcccagaacctGaggatcccatcaaagataac	6	14	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	15	85326354	85326354	G	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	nonsense	c.448	p.E150*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	295	0	0	210	89	29.77	-	-	-	T	85326354	G	T	85326354	4	4	529	1	0	0	0	0	0	1	0	0	18118	1291	45	2	450	2	ZNF592	15	85326354	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	12302330	85326354	17205038	170	47114										
NTRK3	0	genome.wustl.edu	37	chr15	88472506	88472506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttcgctccaaccaggcagttCctggtggccaggtctcggtg	13	13	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	15	88472506	88472506	C	G	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	missense	c.2049	p.R683S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	267	0	0	75	34	31.19	-	-	-	G	88472506	C	G	88472506	3	3	529	1	0	0	0	0	1	0	0	0	10781	854	30	2	486	2	NTRK3	15	88472506	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3146152	88472506	14058886	171	47115										
CACNA1H	0	genome.wustl.edu	37	chr16	1270974	1270974	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccacccctgccccagggggtGgtgcagatgaccccgtgtag	14	15	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	1270974	1270974	G	A	SNP	CACNA1H	ENST00000569107	human	ensembl	69_37n	1	novel	nonsense	c.3281	p.W1094*	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_PKD_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CACNA1H	HGNC	ENSG00000196557	8	0	0	5	4	44.44	-	-	-	A	1270974	G	A	1270974	4	1	529	1	0	0	0	0	0	1	0	0	2570	1348	47	4	7176	4	CACNA1H	16	1270974	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		1270974	89083779	172	47116										
SRRM2	0	genome.wustl.edu	37	chr16	2815760	2815760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaaatcgaggtcttcacgccGacggcgctcagcttcatctc	9	14	5	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	2815760	2815760	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.5231	p.R1744Q	0.232	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	127	0	0	86	66	43.14	-	-	-	A	2815760	G	A	2815760	3	1	529	1	0	0	0	0	1	0	0	0	15260	1058	37	1	5269	1	SRRM2	16	2815760	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1544786	2815760	87538993	173	47117										
GSPT1	0	genome.wustl.edu	37	chr16	11971338	11971338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaaccctggaagaatctcctCttcttcaattcctttcagtc	4	13	5	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	11971338	11971338	C	G	SNP	GSPT1	ENST00000434724	human	ensembl	69_37n	-1	known	missense	c.1528	p.E510Q	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT1	HGNC	ENSG00000103342	98	0	0	97	32	24.81	-	-	-	G	11971338	C	G	11971338	3	3	529	1	0	0	0	0	1	0	0	0	6877	922	32	2	401	2	GSPT1	16	11971338	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	9155578	11971338	78383415	174	47118										
ARHGAP17	0	genome.wustl.edu	37	chr16	24965944	24965944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctcctccttcatgcctgtctCcagaagcagcatgacacagg	8	15	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	24965944	24965944	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.832	p.E278K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	130	0	0	58	38	39.58	-	-	-	T	24965944	C	T	24965944	3	4	529	1	0	0	0	0	1	0	0	0	869	864	30	2	1857	2	ARHGAP17	16	24965944	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	12994606	24965944	65388809	175	47119										
MAZ	0	genome.wustl.edu	37	chr16	29819563	29819563	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtccccaggccggatcacctCaacagtcacgtcagacaagt	9	15	4	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	29819563	29819563	C	G	SNP	MAZ	ENST00000561855	human	ensembl	69_37n	1	known	missense	c.205	p.Q69E	1.000	NULL	NULL	-	no_errors	MAZ	HGNC	ENSG00000103495	23	0	0	4	5	55.56	-	-	-	G	29819563	C	G	29819563	3	3	529	1	0	0	0	0	1	0	0	0	9411	813	29	2	1066	2	MAZ	16	29819563	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4853619	29819563	60535190	176	47120										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53639477	53639477	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cacgccaatgtcctcacactCcaggtcctgctcgtcctctg	7	18	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	53639477	53639477	C	G	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	missense	c.3751	p.E1251Q	1.000	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	171	0	0	45	46	50.55	-	-	-	G	53639477	C	G	53639477	3	3	529	1	0	0	0	0	1	0	0	0	13636	864	30	2	204	2	RPGRIP1L	16	53639477	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	23819914	53639477	36715276	177	47121										
DPEP3	0	genome.wustl.edu	37	chr16	68014005	68014005	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcacctacatacccgtccacGagtgggaaactccgcatcag	9	15	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	68014005	68014005	G	A	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	silent	c.354	p.L118	0.029	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	70	0	0	10	7	41.18	-	-	-	A	68014005	G	A	68014005	2	1	529	1	0	0	0	0	0	0	0	1	4750	1045	37	1		1	DPEP3	16	68014005	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	14374528	68014005	22340748	178	47122										
NFATC3	0	genome.wustl.edu	37	chr16	68224697	68224697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgaagcaagaacacagagaaGagattgatttgtcttcagtt	10	5	2	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	68224697	68224697	G	C	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.2125	p.E709Q	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	648	0	0	103	90	46.63	-	-	-	C	68224697	G	C	68224697	3	2	529	1	0	0	0	0	1	0	0	0	10436	943	33	2	2159	2	NFATC3	16	68224697	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	210692	68224697	22130056	179	47123										
NFATC3	0	genome.wustl.edu	37	chr16	68224886	68224886	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cacagttgcagtgtagagatGagagtgttagtaaagaacag	13	4	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	68224886	68224886	G	A	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.2314	p.E772K	0.974	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	887	3	0.34	146	99	40.41	-	-	-	A	68224886	G	A	68224886	3	1	529	1	0	0	0	0	1	0	0	0	10436	1291	45	2	2348	2	NFATC3	16	68224886	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	189	68224886	22129867	180	47124										
FTSJD1	0	genome.wustl.edu	37	chr16	71319082	71319082	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caaagaagaaactaaagcttCttgttcacctgggtttcctt	7	9	2	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	16	71319082	71319082	C	G	SNP	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	missense	c.742	p.E248Q	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	233	0	0	98	78	44.32	-	-	-	G	71319082	C	G	71319082	3	3	529	1	0	0	0	0	1	0	0	0	6139	922	32	2	1574	2	FTSJD1	16	71319082	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3094196	71319082	19035671	181	47125										
KIAA0753	0	genome.wustl.edu	37	chr17	6515265	6515265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcttgctggcgccagagtatCtttcttcctaaacggcacat	8	12	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	6515265	6515265	C	G	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.1519	p.D507H	0.958	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	377	1	0.26	179	137	43.35	-	-	-	G	6515265	C	G	6515265	3	3	529	1	0	0	0	0	1	0	0	0	8243	913	32	2	1432	2	KIAA0753	17	6515265	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		6515265	74679945	182	47126										
FBXO39	0	genome.wustl.edu	37	chr17	6690652	6690652	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caaacagatatgagacgaatGaagaggacaagaccctgcag	11	8	0	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	6690652	6690652	G	A	SNP	FBXO39	ENST00000321535	human	ensembl	69_37n	1	known	missense	c.1234	p.E412K	0.986	NULL	NULL	-	no_errors	FBXO39	HGNC	ENSG00000177294	251	0	0	97	69	41.57	-	-	-	A	6690652	G	A	6690652	3	1	529	1	0	0	0	0	1	0	0	0	5793	1291	45	2	1244	2	FBXO39	17	6690652	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	175387	6690652	74504558	183	47127										
TP53	0	genome.wustl.edu	37	chr17	7577509	7577509	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggctcctgacctggagtcttCcagtgtgatgatggtgagga	15	8	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	7577509	7577509	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.772	p.E258Q	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	98	0	0	28	20	41.67	-	-	-	G	7577509	C	G	7577509	3	3	529	1	0	0	0	0	1	0	0	0	16477	864	30	2	518	2	TP53	17	7577509	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	886857	7577509	73617701	184	47128										
PER1	0	genome.wustl.edu	37	chr17	8051337	8051337	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttcttgtggatagccagcatGaggggtcggtcctcaggatg	15	8	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	8051337	8051337	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	silent	c.1212	p.L404	0.996	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	38	0	0	6	9	60	-	-	-	A	8051337	G	A	8051337	2	1	529	1	0	0	0	0	0	0	0	1	11802	1277	45	2		2	PER1	17	8051337	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	473828	8051337	73143873	185	47129										
CCDC42	0	genome.wustl.edu	37	chr17	8647906	8647906	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtactcggccaggtcttcctCttccatgatgcccagactca	8	15	3	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	8647906	8647906	C	G	SNP	CCDC42	ENST00000293845	human	ensembl	69_37n	-1	known	missense	c.22	p.E8Q	1.000	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973	37	0	0	22	12	35.29	-	-	-	G	8647906	C	G	8647906	3	3	529	1	0	0	0	0	1	0	0	0	2840	922	32	2	956	2	CCDC42	17	8647906	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	596569	8647906	72547304	186	47130										
ZNF286B	0	genome.wustl.edu	37	chr17	18566541	18566541	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgctcaacaaaaaggcagttCtgtaataggtaagagttaat	9	5	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	18566541	18566541	C	T	SNP	ZNF286B	ENST00000285274	human	ensembl	69_37n	-1	putative	splice_site	c.127-1	e3-1	0.843	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	ZNF286B	HGNC	ENSG00000249459	115	0	0	68	23	25.27	-	-	-	T	18566541	C	T	18566541	5	4	529	1	0	0	0	0	0	0	1	0	17920	913	32	2	1294	2	ZNF286B	17	18566541	Splice_Site	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	9918635	18566541	62628669	187	47131										
KRT9	0	genome.wustl.edu	37	chr17	39723875	39723875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcccctggacccacttcctcCaccatagccacctccacttc	3	22	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	17	39723875	39723875	C	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	missense	c.1522	p.G508R	0.886	NULL	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	73	0	0	60	115	65.71	-	-	-	T	39723875	C	T	39723875	3	4	529	1	0	0	0	0	1	0	0	0	8554	603	21	4	353	4	KRT9	17	39723875	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	21157334	39723875	41471335	188	47132			2	84		3	3	949	C		2.912633e-05
KRT9	0	genome.wustl.edu	37	chr17	39724602	39724602	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agctggccacagtagcggttCttcgtgtcttccaagctctt	10	12	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	17	39724602	39724602	C	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	silent	c.1206	p.K402	0.736	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	144	0	0	106	250	70.22	-	-	-	T	39724602	C	T	39724602	2	4	529	1	0	0	0	0	0	0	0	1	8554	912	32	2		2	KRT9	17	39724602	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	727	39724602	41470608	189	47133			2	84		3	3	949	C		2.912633e-05
KRT9	0	genome.wustl.edu	37	chr17	39724823	39724823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccgtgccggagctgggtcacCtccttggcactggactgcac	13	15	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	17	39724823	39724823	C	T	SNP	KRT9	ENST00000246662	human	ensembl	69_37n	-1	known	silent	c.1107	p.E369	0.871	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	259	0	0	168	487	74.35	-	-	-	T	39724823	C	T	39724823	2	4	529	1	0	0	0	0	0	0	0	1	8554	680	24	4		4	KRT9	17	39724823	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	221	39724823	41470387	190	47134			2	84		3	3	949	C		2.912633e-05
JUP	0	genome.wustl.edu	37	chr17	39919553	39919553	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agctgattcaccagaatcttCagcacactctccaggccctc	6	16	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	39919553	39919553	C	T	SNP	JUP	ENST00000310706	human	ensembl	69_37n	-1	known	silent	c.1179	p.L393	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	JUP	HGNC	ENSG00000173801	145	0	0	133	21	13.64	-	-	-	T	39919553	C	T	39919553	2	4	529	1	0	0	0	0	0	0	0	1	8026	813	29	2		2	JUP	17	39919553	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	194730	39919553	41275657	191	47135										
EFTUD2	0	genome.wustl.edu	37	chr17	42929858	42929858	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtctcaaagccaaaagagtcGatggccgggataaaagcttt	11	8	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	42929858	42929858	G	A	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	silent	c.2634	p.I878	0.806	pfam_Transl_elong_EFG/EF2_C,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	78	0	0	41	36	46.75	-	-	-	A	42929858	G	A	42929858	2	1	529	1	0	0	0	0	0	0	0	1	4996	1048	37	1		1	EFTUD2	17	42929858	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3010305	42929858	38265352	192	47136										
TRIM37	0	genome.wustl.edu	37	chr17	57139966	57139966	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccagcaaagtcctgaaacttGaagaggtggactgtaaacag	11	8	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	57139966	57139966	G	C	SNP	TRIM37	ENST00000262294	human	ensembl	69_37n	-1	known	missense	c.904	p.Q302E	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395	121	0	0	315	49	13.42	-	-	-	C	57139966	G	C	57139966	3	2	529	1	0	0	0	0	1	0	0	0	16607	1299	45	2	2054	2	TRIM37	17	57139966	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	14210108	57139966	24055244	193	47137										
MED13	0	genome.wustl.edu	37	chr17	60023893	60023893	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	caaaatgaattgggagacatGagcgtctgtcctgggttgca	13	7	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	60023893	60023893	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.6461	p.S2154L	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	106	0	0	89	78	46.71	-	-	-	A	60023893	G	A	60023893	3	1	529	1	0	0	0	0	1	0	0	0	9501	1294	45	2	67	2	MED13	17	60023893	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2883927	60023893	21171317	194	47138										
MARCH10	0	genome.wustl.edu	37	chr17	60802440	60802440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gatgcgacacaagtctccctCctcctcggagtcctcctcca	7	18	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	60802440	60802440	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	missense	c.1963	p.E655K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	151	0	0	233	40	14.6	-	-	-	T	60802440	C	T	60802440	3	4	529	1	0	0	0	0	1	0	0	0	9370	864	30	2	483	2	MARCH10	17	60802440	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	778547	60802440	20392770	195	47139										
MARCH10	0	genome.wustl.edu	37	chr17	60821843	60821843	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gggctgactgtaaatctcctCaggtttggcttcctctttct	9	11	4	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	60821843	60821843	C	G	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	155	0	0	276	103	27.11	-	-	-	G	60821843	C	G	60821843	2	3	529	1	0	0	0	0	0	0	0	1	9370	813	29	2		2	MARCH10	17	60821843	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	19403	60821843	20373367	196	47140										
TEX2	0	genome.wustl.edu	37	chr17	62272330	62272330	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ggttcattgtagctggccctCctggatatatttttattggg	11	7	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	62272330	62272330	C	G	SNP	TEX2	ENST00000258991	human	ensembl	69_37n	-1	known	missense	c.1770	p.R590S	0.999	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478	198	0	0	266	40	13.07	-	-	-	G	62272330	C	G	62272330	3	3	529	1	0	0	0	0	1	0	0	0	15876	854	30	2	1674	2	TEX2	17	62272330	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1450487	62272330	18922880	197	47141										
BPTF	0	genome.wustl.edu	37	chr17	65916216	65916216	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	attcgatctgaatattgtatCaggaaaatcatttgtcccat	6	7	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	65916216	65916216	C	G	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.5892	p.I1964M	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	203	0	0	309	67	17.82	-	-	-	G	65916216	C	G	65916216	3	3	529	1	0	0	0	0	1	0	0	0	1503	816	29	2	5950	2	BPTF	17	65916216	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3643886	65916216	15278994	198	47142										
ABCA8	0	genome.wustl.edu	37	chr17	66881408	66881408	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agtgaagataaatggaatatCactttcgaagatactgaacg	9	5	1	4			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	66881408	66881408	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.3478	p.D1160N	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	79	0	0	163	42	20.49	-	-	-	T	66881408	C	T	66881408	3	4	529	1	0	0	0	0	1	0	0	0	38	826	29	2	1443	2	ABCA8	17	66881408	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	965192	66881408	14313802	199	47143										
ABCA5	0	genome.wustl.edu	37	chr17	67260917	67260917	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ataaaaatataatccataatGaaatgccaataagcttccta	3	7	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	67260917	67260917	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.3277	p.H1093Y	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	124	0	0	110	32	22.54	-	-	-	A	67260917	G	A	67260917	3	1	529	1	0	0	0	0	1	0	0	0	35	1290	45	2	1718	2	ABCA5	17	67260917	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	379509	67260917	13934293	200	47144										
ABCA5	0	genome.wustl.edu	37	chr17	67260950	67260950	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcttcctagcatcaaaataaGaatgataaaaaataagggga	8	5	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	67260950	67260950	G	C	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.3244	p.L1082V	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	130	0	0	107	34	24.11	-	-	-	C	67260950	G	C	67260950	3	2	529	1	0	0	0	0	1	0	0	0	35	942	33	2	1751	2	ABCA5	17	67260950	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	33	67260950	13934260	201	47145										
KCNJ2	0	genome.wustl.edu	37	chr17	68171693	68171693	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcaatcgtgggctgcatcatCgatgctttcatcattggcgc	10	11	4	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	17	68171693	68171693	C	G	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.513	p.I171M	0.060	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	269	0	0	85	38	30.65	-	-	-	G	68171693	C	G	68171693	3	3	529	1	0	0	0	0	1	0	0	0	8105	874	31	3	515	3	KCNJ2	17	68171693	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	910743	68171693	13023517	202	47146										
ATP8B3	0	genome.wustl.edu	37	chr19	1783049	1783049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actgtgactcttttgggctcGaagctgcctcttcatcagat	9	11	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	1783049	1783049	G	A	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.3911	p.S1304L	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	9	0	0	4	7	63.64	-	-	-	A	1783049	G	A	1783049	3	1	529	1	0	0	0	0	1	0	0	0	1200	1059	37	1	25	1	ATP8B3	19	1783049	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		1783049	57345934	203	47147										
ZNF554	0	genome.wustl.edu	37	chr19	2832427	2832427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttttcaaccagtggcttcttCccacttggagcaaagagaag	9	10	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	2832427	2832427	C	A	SNP	ZNF554	ENST00000317243	human	ensembl	69_37n	1	known	missense	c.380	p.S127Y	0.024	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006	279	0	0	127	50	28.25	-	-	-	A	2832427	C	A	2832427	3	1	529	1	0	0	0	0	1	0	0	0	18081	855	30	2	394	2	ZNF554	19	2832427	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1049378	2832427	56296556	204	47148										
LRG1	0	genome.wustl.edu	37	chr19	4538658	4538658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccctcagctgcggcactggcCgcaggaattcgggcgagagg	16	13	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	4538658	4538658	C	T	SNP	LRG1	ENST00000306390	human	ensembl	69_37n	-1	known	missense	c.338	p.R113Q	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	29	0	0	15	14	48.28	-	-	-	T	4538658	C	T	4538658	3	4	529	1	0	0	0	0	1	0	0	0	9008	652	23	1	709	1	LRG1	19	4538658	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1706231	4538658	54590325	205	47149										
ZNF439	0	genome.wustl.edu	37	chr19	11978285	11978285	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agttggcctaggtaactcatCttctaatatgaacatcagag	8	8	4	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	11978285	11978285	C	T	SNP	ZNF439	ENST00000304030	human	ensembl	69_37n	1	known	missense	c.401	p.S134F	0.053	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291	729	0	0	382	173	31.12	-	-	-	T	11978285	C	T	11978285	3	4	529	1	0	0	0	0	1	0	0	0	18007	913	32	2	411	2	ZNF439	19	11978285	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	7439627	11978285	47150698	206	47150										
C19orf53	0	genome.wustl.edu	37	chr19	13888907	13888907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aagaagatcgaacatgacgtGgtgatgaaagccagcagcag	13	7	0	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	13888907	13888907	G	A	SNP	C19orf53	ENST00000588234	human	ensembl	69_37n	1	known	silent	c.195	p.V65	0.140	pfam_UPF0390	pfam_UPF0390	-	no_errors	C19orf53	HGNC	ENSG00000104979	283	1	0.35	98	47	32.41	-	-	-	A	13888907	G	A	13888907	2	1	529	1	0	0	0	0	0	0	0	1	1953	1335	47	4		4	C19orf53	19	13888907	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1910622	13888907	45240076	207	47151										
CC2D1A	0	genome.wustl.edu	37	chr19	14029787	14029787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agcggatggagcggtaccagGtggccgcagcccaggccaag	17	12	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	14029787	14029787	G	C	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1081	p.V361L	0.001	smart_DM14	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	21	0	0	14	8	36.36	-	-	-	C	14029787	G	C	14029787	3	2	529	1	0	0	0	0	1	0	0	0	2751	1261	44	4	1119	4	CC2D1A	19	14029787	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	140880	14029787	45099196	208	47152										
TMEM59L	0	genome.wustl.edu	37	chr19	18731260	18731260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agggcttcatgatggagcccGattggcccctgtacccgccg	13	14	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	18731260	18731260	G	A	SNP	TMEM59L	ENST00000262817	human	ensembl	69_37n	1	known	missense	c.943	p.D315N	0.524	NULL	pfam_Uncharacterised_TMEM59	-	no_errors	TMEM59L	HGNC	ENSG00000105696	43	0	0	24	13	35.14	-	-	-	A	18731260	G	A	18731260	3	1	529	1	0	0	0	0	1	0	0	0	16281	1058	37	1	973	1	TMEM59L	19	18731260	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	4701473	18731260	40397723	209	47153										
ZNF492	0	genome.wustl.edu	37	chr19	22847268	22847268	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagagcttttagccagtcctCaacccttactgcacataaga	6	13	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	22847268	22847268	C	G	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	nonsense	c.797	p.S266*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	177	0	0	120	50	29.41	-	-	-	G	22847268	C	G	22847268	4	3	529	1	0	0	0	0	0	1	0	0	18039	838	29	2	807	2	ZNF492	19	22847268	Nonsense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4116008	22847268	36281715	210	47154										
TIMM50	0	genome.wustl.edu	37	chr19	39971368	39971368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcgcctgcggcaatccgcccGatgcctttggtctctctcgg	12	16	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	39971368	39971368	G	C	SNP	TIMM50	ENST00000314349	human	ensembl	69_37n	1	known	missense	c.184	p.D62H	0.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197	57	0	0	23	10	30.3	-	-	-	C	39971368	G	C	39971368	3	2	529	1	0	0	0	0	1	0	0	0	16008	1058	37	3	186	3	TIMM50	19	39971368	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	17124100	39971368	19157615	211	47155										
FCGBP	0	genome.wustl.edu	37	chr19	40377034	40377034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aagtcatccttggggtcgccGttgtagttcccacacaggcc	11	13	1	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	43	0	0	19	7	26.92	-	-	-	A	40377034	G	A	40377034	2	1	529	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40377034	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	405666	40377034	18751949	212	47156										
ZNF780A	0	genome.wustl.edu	37	chr19	40581547	40581547	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tacaccagaatgaatactctGatgttgaacaaggtttgagc	9	7	1	5			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	40581547	40581547	G	C	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	missense	c.805	p.Q269E	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	524	0	0	522	224	29.99	-	-	-	C	40581547	G	C	40581547	3	2	529	1	0	0	0	0	1	0	0	0	18245	1299	45	2	1254	2	ZNF780A	19	40581547	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	204513	40581547	18547436	213	47157										
PSG9	0	genome.wustl.edu	37	chr19	43763165	43763165	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gggactgacggggaggctctGaccgtttagccaccaaatgt	14	10	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	43763165	43763165	G	C	SNP	PSG9	ENST00000270077	human	ensembl	69_37n	-1	known	missense	c.832	p.Q278E	0.001	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG9	HGNC	ENSG00000183668	498	0	0	385	157	28.97	-	-	-	C	43763165	G	C	43763165	3	2	529	1	0	0	0	0	1	0	0	0	12742	1299	45	2	460	2	PSG9	19	43763165	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3181618	43763165	15365818	214	47158										
IRF2BP1	0	genome.wustl.edu	37	chr19	46388255	46388255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tggaggacgggcagtagcatCgaaggcgaacactcgcccca	14	12	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	46388255	46388255	C	T	SNP	IRF2BP1	ENST00000302165	human	ensembl	69_37n	-1	known	missense	c.778	p.D260N	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP1	HGNC	ENSG00000170604	14	0	0	11	5	31.25	-	-	-	T	46388255	C	T	46388255	3	4	529	1	0	0	0	0	1	0	0	0	7883	884	31	1	980	1	IRF2BP1	19	46388255	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2625090	46388255	12740728	215	47159										
KLK9	0	genome.wustl.edu	37	chr19	51509731	51509732	+	Frame_Shift_Ins	INS	-	-	C													0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	acccttggggctggacacggINSccccccagcctgagatgaga							TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-11A-22W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	4144f1ac-bfb3-48f2-bb03-1e82640b5a1f	19	51509731	51509732	-	C	INS	KLK9	ENST00000250366	human	ensembl	69_37n	-1	known	frame_shift_ins	c.449_448	p.A150fs	0.982:0.966	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK9	HGNC	ENSG00000213022	21	0	0	45	8	15.09	-	-	-	C	51509732	-	C	51509731	7	5	529	1	0	1	1	0	0	0	0	0	8464	1203	42	0	315	0	KLK9	19	51509731	Frame_Shift_Ins	INS	-	TCGA-BH-A0DZ-01A-11W-A019-09	5121476	51509731	7619252	216	47160										
TRIM28	0	genome.wustl.edu	37	chr19	59059687	59059687	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttccagctgcaccgggccctCaagatgattgtggatcccgt	11	13	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	59059687	59059687	C	G	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	silent	c.1128	p.L376	0.999	smart_Bbox_C	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	112	0	0	36	18	33.33	-	-	-	G	59059687	C	G	59059687	2	3	529	1	0	0	0	0	0	0	0	1	16598	813	29	2		2	TRIM28	19	59059687	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	7549956	59059687	69296	217	47161										
TRIM28	0	genome.wustl.edu	37	chr19	59059946	59059946	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gcccctgagcaagcagggctCtggcagcagccaggtgagca	15	13	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	19	59059946	59059946	C	G	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	missense	c.1310	p.S437C	0.981	NULL	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	51	0	0	16	5	23.81	-	-	-	G	59059946	C	G	59059946	3	3	529	1	0	0	0	0	1	0	0	0	16598	913	32	2	1344	2	TRIM28	19	59059946	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	259	59059946	69037	218	47162										
ZNF337	0	genome.wustl.edu	37	chr20	25656844	25656844	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tggtgtgtgataaggtgtgaCttattgctaaagcctcggcc	13	7	0	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	20	25656844	25656844	C	A	SNP	ZNF337	ENST00000252979	human	ensembl	69_37n	-1	known	missense	c.1080	p.K360N	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	290	0	0	221	110	33.23	-	-	-	A	25656844	C	A	25656844	3	1	529	1	0	0	0	0	1	0	0	0	17949	564	20	4	1179	4	ZNF337	20	25656844	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		25656844	37368676	219	47163										
PDRG1	0	genome.wustl.edu	37	chr20	30534327	30534327	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcaaaaaggcggttgaccttCactttaagttgcttccgcag	9	10	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	20	30534327	30534327	C	A	SNP	PDRG1	ENST00000202017	human	ensembl	69_37n	-1	known	silent	c.291	p.V97	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356	308	0	0	81	26	24.3	-	-	-	A	30534327	C	A	30534327	2	1	529	1	0	0	0	0	0	0	0	1	11763	813	29	2		2	PDRG1	20	30534327	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4877483	30534327	32491193	220	47164										
TNNC2	0	genome.wustl.edu	37	chr20	44452972	44452972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcggccagctcctcctcgctCttccctttcgcgtcctcttt	6	19	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	20	44452972	44452972	C	G	SNP	TNNC2	ENST00000372555	human	ensembl	69_37n	-1	known	missense	c.273	p.K91N	1.000	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TNNC2	HGNC	ENSG00000101470	132	0	0	77	40	34.19	-	-	-	G	44452972	C	G	44452972	3	3	529	1	0	0	0	0	1	0	0	0	16420	912	32	2	221	2	TNNC2	20	44452972	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	13918645	44452972	18572548	221	47165										
ARFGEF2	0	genome.wustl.edu	37	chr20	47601269	47601269	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	atctctgcttgaaacaggttCaacaagaaacccaagagggg	10	9	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	20	47601269	47601269	C	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.1962	p.F654L	1.000	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	220	0	0	186	75	28.74	-	-	-	G	47601269	C	G	47601269	3	3	529	1	0	0	0	0	1	0	0	0	855	825	29	2	2020	2	ARFGEF2	20	47601269	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3148297	47601269	15424251	222	47166										
BRWD1	0	genome.wustl.edu	37	chr21	40571393	40571393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aacagacactttcagagctaGaattctcttctacatcactc	4	12	4	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	21	40571393	40571393	G	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.4949	p.S1650C	0.730	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	212	0	0	183	109	37.33	-	-	-	C	40571393	G	C	40571393	3	2	529	1	0	0	0	0	1	0	0	0	1533	942	33	2	2264	2	BRWD1	21	40571393	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		40571393	7558502	223	47167										
PDE9A	0	genome.wustl.edu	37	chr21	44153465	44153465	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcttttctttttcattcctaGagcattcaaaatcaatgaac	3	9	5	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	21	44153465	44153465	G	A	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	1	known	splice_site	c.498-1	e7-1	1.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191	98	0	0	56	27	32.53	-	-	-	A	44153465	G	A	44153465	5	1	529	1	0	0	0	0	0	0	1	0	11728	956	33	2	603	2	PDE9A	21	44153465	Splice_Site	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3582072	44153465	3976430	224	47168										
ARVCF	0	genome.wustl.edu	37	chr22	19959495	19959495	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gtccaccgtggagtatccgtCtgtagatggggtaaggtggg	17	7	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	19959495	19959495	C	G	SNP	ARVCF	ENST00000263207	human	ensembl	69_37n	-1	known	splice_site	c.2696-1	e16-1	1.000	-	-	-	no_errors	ARVCF	HGNC	ENSG00000099889	26	0	0	9	5	35.71	-	-	-	G	19959495	C	G	19959495	5	3	529	1	0	0	0	0	0	0	1	0	1007	927	32	2	201	2	ARVCF	22	19959495	Splice_Site	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09		19959495	31345071	225	47169										
CABIN1	0	genome.wustl.edu	37	chr22	24481034	24481034	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actacctcctggctgattatCatttcaaaaacaaggagcag	7	10	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	24481034	24481034	C	G	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	missense	c.3193	p.H1065D	1.000	smart_TPR_repeat	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	130	0	0	60	32	34.41	-	-	-	G	24481034	C	G	24481034	3	3	529	1	0	0	0	0	1	0	0	0	2553	826	29	2	3275	2	CABIN1	22	24481034	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4521539	24481034	26823532	226	47170										
HPS4	0	genome.wustl.edu	37	chr22	26868878	26868878	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaaccgcttgcagctgacatCagggagctccacagcacagc	10	14	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	26868878	26868878	C	G	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	missense	c.289	p.D97H	0.898	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	207	0	0	120	53	30.64	-	-	-	G	26868878	C	G	26868878	3	3	529	1	0	0	0	0	1	0	0	0	7392	826	29	2	1862	2	HPS4	22	26868878	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2387844	26868878	24435688	227	47171										
DUSP18	0	genome.wustl.edu	37	chr22	31059955	31059955	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccgctgactgagggctgccgGaactgaactgggaaggcaca	15	11	0	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	31059955	31059955	G	A	SNP	DUSP18	ENST00000334679	human	ensembl	69_37n	-1	known	silent	c.36	p.F12	0.017	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP18	HGNC	ENSG00000167065	132	0	0	68	22	24.44	-	-	-	A	31059955	G	A	31059955	2	1	529	1	0	0	0	0	0	0	0	1	4852	1165	41	2		2	DUSP18	22	31059955	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	4191077	31059955	20244611	228	47172										
EP300	0	genome.wustl.edu	37	chr22	41573738	41573738	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tcagccccagcaactacagtCtgggatgccaaggccagcca	10	15	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	41573738	41573738	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.6023	p.S2008F	0.684	pfam_Nuc_rcpt_coact_CREBbp	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	168	1	0.59	137	51	27.13	-	-	-	T	41573738	C	T	41573738	3	4	529	1	0	0	0	0	1	0	0	0	5185	913	32	2	6145	2	EP300	22	41573738	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	10513783	41573738	9730828	229	47173										
RANGAP1	0	genome.wustl.edu	37	chr22	41677000	41677000	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagctgtcccccggccacctGagtcttggcaagtgtctctg	11	15	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	41677000	41677000	G	C	SNP	RANGAP1	ENST00000356244	human	ensembl	69_37n	-1	known	missense	c.49	p.Q17E	1.000	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401	109	0	0	58	18	23.68	-	-	-	C	41677000	G	C	41677000	3	2	529	1	0	0	0	0	1	0	0	0	13116	1299	45	2	1774	2	RANGAP1	22	41677000	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	103262	41677000	9627566	230	47174										
ATXN10	0	genome.wustl.edu	37	chr22	46136266	46136266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tagatcttttgcgggtgattCatgtagctggaaaagaaacc	11	6	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	22	46136266	46136266	C	T	SNP	ATXN10	ENST00000252934	human	ensembl	69_37n	1	known	missense	c.1021	p.H341Y	1.000	superfamily_ARM-type_fold	pfam_Ataxin-10_domain,superfamily_ARM-type_fold	-	no_errors	ATXN10	HGNC	ENSG00000130638	135	0	0	98	40	28.99	-	-	-	T	46136266	C	T	46136266	3	4	529	1	0	0	0	0	1	0	0	0	1214	826	29	2	1055	2	ATXN10	22	46136266	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4459266	46136266	5168300	231	47175										
CSF2RA	0	genome.wustl.edu	37	chrX	1407734	1407734	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	tgtacctgggcgaggggtccGacggccccccgtgacgtcca	15	15	0	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	1407734	1407734	G	A	SNP	CSF2RA	ENST00000417535	human	ensembl	69_37n	1	known	silent	c.426	p.P142	0.000	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223	496	1	0.2	265	131	33	-	-	-	A	1407734	G	A	1407734	2	1	529	1	0	0	0	0	0	0	0	1	3966	1045	37	1		1	CSF2RA	23	1407734	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09		1407734	153862826	232	47176										
MSL3	0	genome.wustl.edu	37	chrX	11779010	11779010	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ttgcctggtgtggactctgtCttaaaaggcctccccactga	10	12	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	11779010	11779010	C	G	SNP	MSL3	ENST00000487782	human	ensembl	69_37n	1	known	missense	c.79	p.L27V	0.996	NULL	pfam_MRG	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MSL3	HGNC	ENSG00000005302	11	0	0	15	4	21.05	-	-	-	G	11779010	C	G	11779010	3	3	529	1	0	0	0	0	1	0	0	0	9951	900	32	2	350	2	MSL3	23	11779010	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	10371276	11779010	143491550	233	47177										
KLHL34	0	genome.wustl.edu	37	chrX	21675045	21675046	+	Frame_Shift_Ins	INS	-	-	C													0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	accacctcccgtgccctgcgINScccccccaccaacaagatgc							TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	21675045	21675046	-	C	INS	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	frame_shift_ins	c.862_861	p.R287fs	0.005:0.005	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	9	0	0	4	2	33.33	-	-	-	C	21675046	-	C	21675045	7	5	529	1	0	1	1	0	0	0	0	0	8440	1087	38	0	1076	0	KLHL34	23	21675045	Frame_Shift_Ins	INS	-	TCGA-BH-A0DZ-01A-11W-A019-09	9896035	21675045	133595515	234	47178										
PCYT1B	0	genome.wustl.edu	37	chrX	24580566	24580566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gttgggctgctcacagggctCtgcttcggggataaggcctg	16	10	2	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	24580566	24580566	C	G	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.954	p.Q318H	1.000	NULL	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	61	0	0	14	8	36.36	-	-	-	G	24580566	C	G	24580566	3	3	529	1	0	0	0	0	1	0	0	0	11684	912	32	2	196	2	PCYT1B	23	24580566	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2905521	24580566	130689994	235	47179										
FAM47B	0	genome.wustl.edu	37	chrX	34961041	34961041	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ccgccttccaagtacttcgcGaagcgcaagcacaggcgcct	10	16	0	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	34961041	34961041	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	silent	c.93	p.A31	0.000	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	83	0	0	71	42	37.17	-	-	-	A	34961041	G	A	34961041	2	1	529	1	0	0	0	0	0	0	0	1	5616	1045	37	1		1	FAM47B	23	34961041	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	10380475	34961041	120309519	236	47180										
MED14	0	genome.wustl.edu	37	chrX	40569291	40569291	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaaggaggatcgtgaaaaatCtgtaaaggcttggagacatc	12	5	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	40569291	40569291	C	T	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	silent	c.1113	p.Q371	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	67	0	0	74	24	24.49	-	-	-	T	40569291	C	T	40569291	2	4	529	1	0	0	0	0	0	0	0	1	9503	912	32	2		2	MED14	23	40569291	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	5608250	40569291	114701269	237	47181										
USP51	0	genome.wustl.edu	37	chrX	55514740	55514740	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aaacgctggtagatcaacctCaggttcttctgccagttctt	8	11	5	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	55514740	55514740	C	G	SNP	USP51	ENST00000500968	human	ensembl	69_37n	-1	known	silent	c.633	p.L211	0.984	NULL	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP51	HGNC	ENSG00000247746	53	0	0	34	6	15	-	-	-	G	55514740	C	G	55514740	2	3	529	1	0	0	0	0	0	0	0	1	17180	813	29	2		2	USP51	23	55514740	Silent	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	14945449	55514740	99755820	238	47182										
MTMR8	0	genome.wustl.edu	37	chrX	63548723	63548723	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cctttatagagagggttcctGaagtctggtttcctctgaac	10	9	2	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	63548723	63548723	G	A	SNP	MTMR8	ENST00000442913	human	ensembl	69_37n	-1	known	nonsense	c.820	p.Q274*	0.998	NULL	smart_Tyr_Pase_cat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTMR8	HGNC	ENSG00000102043	146	0	0	182	76	29.46	-	-	-	A	63548723	G	A	63548723	4	1	529	1	0	0	0	0	0	1	0	0	10021	1281	45	2	716	2	MTMR8	23	63548723	Nonsense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	8033983	63548723	91721837	239	47183										
PJA1	0	genome.wustl.edu	37	chrX	68382802	68382802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cggatacctggaatagtcctCattatcaatattcaggttgg	9	8	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	68382802	68382802	C	T	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.280	p.E94K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	133	0	0	47	24	33.8	-	-	-	T	68382802	C	T	68382802	3	4	529	1	0	0	0	0	1	0	0	0	12035	835	29	2	1655	2	PJA1	23	68382802	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	4834079	68382802	86887758	240	47184										
TAF1	0	genome.wustl.edu	37	chrX	70683834	70683834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	aggtccacctgtcagaggacGaggaggacagtgaggatttc	15	8	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	70683834	70683834	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.5659	p.E1887K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	66	0	0	40	14	25.93	-	-	-	A	70683834	G	A	70683834	3	1	529	1	0	0	0	0	1	0	0	0	15605	1059	37	1	5770	1	TAF1	23	70683834	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	2301032	70683834	84586726	241	47185										
ERCC6L	0	genome.wustl.edu	37	chrX	71426743	71426743	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cctcgattgtaaagagctctCttaattcttgtttactaaaa	5	8	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	71426743	71426743	C	G	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.1874	p.R625T	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	184	0	0	246	84	25.45	-	-	-	G	71426743	C	G	71426743	3	3	529	1	0	0	0	0	1	0	0	0	5255	913	32	2	1882	2	ERCC6L	23	71426743	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	742909	71426743	83843817	242	47186										
KIAA2022	0	genome.wustl.edu	37	chrX	73960911	73960911	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actaatttgaccagatggatCattaaatgttgacaggcaag	9	6	1	3			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	73960911	73960911	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3481	p.D1161N	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	222	0	0	281	160	36.2	-	-	-	T	73960911	C	T	73960911	3	4	529	1	0	0	0	0	1	0	0	0	8321	826	29	2	1077	2	KIAA2022	23	73960911	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	2534168	73960911	81309649	243	47187										
MAGEE2	0	genome.wustl.edu	37	chrX	75004401	75004401	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gctatcctatcggtgatctgGaaaccccgtttgctgactaa	9	11	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	75004401	75004401	G	C	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.486	p.F162L	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	137	0	0	99	37	27.01	-	-	-	C	75004401	G	C	75004401	3	2	529	1	0	0	0	0	1	0	0	0	9257	1165	41	2	1089	2	MAGEE2	23	75004401	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	1043490	75004401	80266159	244	47188										
KLHL4	0	genome.wustl.edu	37	chrX	86869457	86869457	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	gttggttctcagcgcagtgtCtgattattttgctgcaatgt	11	7	2	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	86869457	86869457	C	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.611	p.S204Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	95	0	0	79	38	32.48	-	-	-	A	86869457	C	A	86869457	3	1	529	1	0	0	0	0	1	0	0	0	8444	913	32	2	621	2	KLHL4	23	86869457	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	11865056	86869457	68401103	245	47189										
LUZP4	0	genome.wustl.edu	37	chrX	114524374	114524374	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctgaaaaagtgccgccaaatCatcccagtcggaaaaaggtt	9	10	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	114524374	114524374	C	T	SNP	LUZP4	ENST00000371920	human	ensembl	69_37n	1	known	missense	c.49	p.H17Y	0.000	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021	123	0	0	52	21	28.77	-	-	-	T	114524374	C	T	114524374	3	4	529	1	0	0	0	0	1	0	0	0	9154	826	29	2	51	2	LUZP4	23	114524374	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	27654917	114524374	40746186	246	47190										
IL13RA1	0	genome.wustl.edu	37	chrX	117895249	117895249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	actgagacacataatgttttCtacgtaaggttttaaaatta	6	5	1	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	117895249	117895249	C	G	SNP	IL13RA1	ENST00000371666	human	ensembl	69_37n	1	known	missense	c.825	p.F275L	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA1	HGNC	ENSG00000131724	279	0	0	257	103	28.61	-	-	-	G	117895249	C	G	117895249	3	3	529	1	0	0	0	0	1	0	0	0	7683	912	32	2	847	2	IL13RA1	23	117895249	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	3370875	117895249	37375311	247	47191										
RNF113A	0	genome.wustl.edu	37	chrX	119005192	119005192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	ctcaaagatggcttgtgcatCgcgctctttctctgtgtcca	9	12	3	1			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	119005192	119005192	C	T	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.385	p.D129N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	511	0	0	246	135	35.43	-	-	-	T	119005192	C	T	119005192	3	4	529	1	0	0	0	0	1	0	0	0	13513	884	31	1	650	1	RNF113A	23	119005192	Missense_Mutation	SNP	C	TCGA-BH-A0DZ-01A-11W-A019-09	1109943	119005192	36265368	248	47192										
GRIA3	0	genome.wustl.edu	37	chrX	122528932	122528932	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	cagttcatacagcgctgggtGaggctggatgaaagggaatt	15	6	1	2			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	122528932	122528932	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	silent	c.864	p.V288	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	231	0	0	281	125	30.79	-	-	-	A	122528932	G	A	122528932	2	1	529	1	0	0	0	0	0	0	0	1	6820	1277	45	2		2	GRIA3	23	122528932	Silent	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	3523740	122528932	32741628	249	47193										
MAGEC1	0	genome.wustl.edu	37	chrX	140995393	140995393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.656	164	3.5246029441315e-70	4.3409620188847	4.93365560104573	3.89529320129075	0.74738108761959	1	126	agtttcctcctcagggggagGacttccagtcttctctccag	10	13	3	0			TCGA-BH-A0DZ-01A-11W-A019-09	TCGA-BH-A0DZ-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6418b7f-96b4-424a-8737-d382ece37afe	dfd32478-8fa8-42a1-b5f7-329c02aa8f87	X	140995393	140995393	G	A	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.2203	p.D735N	0.013	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	363	1	0.27	434	162	27.09	-	-	-	A	140995393	G	A	140995393	3	1	529	1	0	0	0	0	1	0	0	0	9251	1174	41	2	2209	2	MAGEC1	23	140995393	Missense_Mutation	SNP	G	TCGA-BH-A0DZ-01A-11W-A019-09	18466461	140995393	14275167	250	47194										
C1orf122	0	genome.wustl.edu	37	chr1	38274781	38274781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ataccctgacttctctccctCcccagggccggtggctggac	10	17	1	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	1	38274781	38274781	C	A	SNP	C1orf122	ENST00000446260	human	ensembl	69_37n	1	known	missense	c.455	p.S152Y	0.997	NULL	NULL	-	no_errors	C1orf122	HGNC	ENSG00000197982	61	0	0	17	5	22.73	-	-	-	A	38274781	C	A	38274781	3	1	530	1	0	0	0	0	1	0	0	0	2009	870	30	2		2	C1orf122	1	38274781	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09		38274781	210975840	1	47195										
EPRS	0	genome.wustl.edu	37	chr1	220162120	220162121	+	In_Frame_Ins	INS	-	-	ATC													0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ccagttttttctttatactgINSagccttcagggacagtaagc							TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-11A-13W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	f587a6a2-4476-4aa2-9a3d-eb131df46c0d	1	220162120	220162121	-	ATC	INS	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	in_frame_ins	c.2587_2586	p.862in_frame_insD	1.000:0.995	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	143	0	0	82	75	47.77	-	-	-	ATC	220162121	-	ATC	220162120	7	5	530	1	0	1	1	0	0	0	0	0	5228	1299	45	0	2007	0	EPRS	1	220162120	In_Frame_Ins	INS	-	TCGA-BH-A0E0-01A-11W-A071-09	181887339	220162120	29088501	2	47196										
ALK	0	genome.wustl.edu	37	chr2	29432665	29432665	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	tactcacctgtagatgtctcGggccatcccgaagtctccaa	8	14	3	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	2	29432665	29432665	G	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	nonsense	c.3823	p.R1275*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	69	0	0	32	7	17.95	-	-	-	A	29432665	G	A	29432665	4	1	530	1	0	0	0	0	0	1	0	0	525	1124	39	1	1059	1	ALK	2	29432665	Nonsense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09		29432665	213766708	3	47197										
NEB	0	genome.wustl.edu	37	chr2	152501038	152501038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gattggtatggcatcaacagGaagatcgtaaccttttctct	9	8	2	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	2	152501038	152501038	G	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.7588	p.P2530S	0.992	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	59	0	0	52	15	22.39	-	-	-	A	152501038	G	A	152501038	3	1	530	1	0	0	0	0	1	0	0	0	10374	1174	41	2	18606	2	NEB	2	152501038	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09	123068373	152501038	90698335	4	47198										
SCN11A	0	genome.wustl.edu	37	chr3	38941399	38941399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ccttaccactctgaaggaacGcaagaatggccagcttctct	8	13	2	2			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-11A-13W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	f587a6a2-4476-4aa2-9a3d-eb131df46c0d	3	38941399	38941399	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.2008	p.R670C	0.239	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	123	1	0.79	47	43	47.78	-	-	-	A	38941399	G	A	38941399	3	1	530	1	0	0	0	0	1	0	0	0	14001	1087	38	1	3423	1	SCN11A	3	38941399	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09		38941399	159081031	5	47199										
RHOA	0	genome.wustl.edu	37	chr3	49413010	49413010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	aacaatcaccagtttcttccGgatggcagccattgctgaaa	8	11	2	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	3	49413010	49413010	G	A	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.13	p.R5W	0.997	tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	150	1	0.66	79	32	28.83	-	-	-	A	49413010	G	A	49413010	3	1	530	1	0	0	0	0	1	0	0	0	13415	1115	39	1	584	1	RHOA	3	49413010	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09	10471611	49413010	148609420	6	47200										
ARSB	0	genome.wustl.edu	37	chr5	78181573	78181573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	cacaaagcccacccctcggaCgcctccttcccacaggctcc	6	22	0	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	5	78181573	78181573	C	T	SNP	ARSB	ENST00000264914	human	ensembl	69_37n	-1	known	missense	c.976	p.V326I	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSB	HGNC	ENSG00000113273	304	0	0	129	41	24.12	-	-	-	T	78181573	C	T	78181573	3	4	530	1	0	0	0	0	1	0	0	0	992	536	19	1	674	1	ARSB	5	78181573	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09		78181573	102733687	7	47201										
FGD2	0	genome.wustl.edu	37	chr6	36976680	36976680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gccctgagtgcaggcctcccGagtccccaggaccacgggag	14	16	0	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	6	36976680	36976680	G	A	SNP	FGD2	ENST00000274963	human	ensembl	69_37n	1	known	missense	c.139	p.E47K	0.000	NULL	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	70	0	0	37	21	36.21	-	-	-	A	36976680	G	A	36976680	3	1	530	1	0	0	0	0	1	0	0	0	5879	1059	37	1	145	1	FGD2	6	36976680	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09		36976680	134138387	8	47202										
TNFRSF21	0	genome.wustl.edu	37	chr6	47221133	47221133	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	agagctgcgtaggcccgctcGtggtcggctgtgtacccatt	14	12	0	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	6	47221133	47221133	G	A	SNP	TNFRSF21	ENST00000296861	human	ensembl	69_37n	-1	known	silent	c.1368	p.H456	0.233	pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_21,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	34	0	0	31	6	16.22	-	-	-	A	47221133	G	A	47221133	2	1	530	1	0	0	0	0	0	0	0	1	16390	1136	40	1		1	TNFRSF21	6	47221133	Silent	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09	10244453	47221133	123893934	9	47203										
SYNE1	0	genome.wustl.edu	37	chr6	152472809	152472809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gcgcagtctcaaactcctcaCgctggccaataaaatgctgg	9	13	2	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	6	152472809	152472809	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.24329	p.R8110H	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	90	0	0	73	20	21.28	-	-	-	T	152472809	C	T	152472809	3	4	530	1	0	0	0	0	1	0	0	0	15537	536	19	1	2185	1	SYNE1	6	152472809	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09	105251676	152472809	18642258	10	47204										
SDK1	0	genome.wustl.edu	37	chr7	4285428	4285428	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gagaagtcggcagatgcatcAgaatctgaggtcagtgtcgg	15	7	3	4			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	7	4285428	4285428	A	C	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.6372	p.S2124	0.002	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	48	0	0	43	5	10.42	-	-	-	C	4285428	A	C	4285428	2	2	530	1	0	0	0	0	0	0	0	1	14056	175	7	5		5	SDK1	7	4285428	Silent	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09		4285428	154853235	11	47205										
MUC17	0	genome.wustl.edu	37	chr7	100683830	100683830	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	tctcaactcctagtgaaggaAgtactccattaacaagtata	6	9	1	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	7	100683830	100683830	A	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.9133	p.S3045C	0.003	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	361	1	0.28	265	55	17.19	-	-	-	T	100683830	A	T	100683830	3	4	530	1	0	0	0	0	1	0	0	0	10046	72	3	5	9143	5	MUC17	7	100683830	Missense_Mutation	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09	96398402	100683830	58454833	12	47206										
RABGAP1	0	genome.wustl.edu	37	chr9	125746848	125746848	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	caatggacgaccagccagggGaaaaggagcttgtgaaaagg	15	7	0	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	9	125746848	125746848	G	T	SNP	RABGAP1	ENST00000373647	human	ensembl	69_37n	1	known	nonsense	c.235	p.E79*	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	78	0	0	41	15	26.79	-	-	-	T	125746848	G	T	125746848	4	4	530	1	0	0	0	0	0	1	0	0	13047	1175	41	2	241	2	RABGAP1	9	125746848	Nonsense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09		125746848	15466583	13	47207										
WAC	0	genome.wustl.edu	37	chr10	28905131	28905131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	aagtccatcacctggtcccaAtcatacttctaatagtagta	5	11	3	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	10	28905131	28905131	A	G	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.1586	p.N529S	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	139	1	0.71	129	35	21.34	-	-	-	G	28905131	A	G	28905131	3	3	530	1	0	0	0	0	1	0	0	0	17344	101	4	5	1632	5	WAC	10	28905131	Missense_Mutation	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09		28905131	106629616	14	47208										
TUBGCP2	0	genome.wustl.edu	37	chr10	135106688	135106688	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	accagggtgcgcatggcggcCgccagggcgtggttcacctg	17	13	1	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	10	135106688	135106688	C	T	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	silent	c.963	p.A321	0.273	pfam_Spc97_Spc98	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	38	0	0	22	4	15.38	-	-	-	T	135106688	C	T	135106688	2	4	530	1	0	0	0	0	0	0	0	1	16863	639	23	1		1	TUBGCP2	10	135106688	Silent	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09	106201557	135106688	428059	15	47209										
ODZ4	0	genome.wustl.edu	37	chr11	78437179	78437179	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ctccatcctccaagcttggaCgcgtcaatttcatagccctg	7	15	2	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	11	78437179	78437179	C	A	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.3495	p.A1165	0.971	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	246	0	0	326	46	12.37	-	-	-	A	78437179	C	A	78437179	2	1	530	1	0	0	0	0	0	0	0	1	10910	523	19	3		3	ODZ4	11	78437179	Silent	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09		78437179	56569337	16	47210										
TUFM	0	genome.wustl.edu	37	chr16	28855746	28855746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gacagagtcctcaccagggaCggagtacaccgcctccacag	11	15	1	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	16	28855746	28855746	C	T	SNP	TUFM	ENST00000313511	human	ensembl	69_37n	-1	known	missense	c.811	p.V271I	0.732	superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952	112	0	0	32	9	21.95	-	-	-	T	28855746	C	T	28855746	3	4	530	1	0	0	0	0	1	0	0	0	16868	536	19	1	576	1	TUFM	16	28855746	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09		28855746	61499007	17	47211										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	144	0	0	34	38	52.78	-	-	-	T	7578406	C	T	7578406	3	4	530	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09		7578406	73616804	18	47212										
ACE	0	genome.wustl.edu	37	chr17	61557164	61557164	+	Frame_Shift_Del	DEL	C	C	-													0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ctggcttcctcgcgaagctaCgccatgctcctgtttgcctg							TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	17	61557164	61557164	C	-	DEL	ACE	ENST00000290866	human	ensembl	69_37n	1	known	frame_shift_del	c.546	p.Y182fs	0.117	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	25	0	0	4	3	42.86	-	-	-	-	61557164	C	-	61557164	7	5	530	1	0	1	0	1	0	0	0	0	136	547	19	0	560	0	ACE	17	61557164	Frame_Shift_Del	DEL	C	TCGA-BH-A0E0-01A-11W-A071-09	53978758	61557164	19638046	19	47213										
LAMA1	0	genome.wustl.edu	37	chr18	7050726	7050726	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	agtggcaccaatctggaataAtaggaggtgcagatcacttc	11	8	2	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	18	7050726	7050726	A	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	nonsense	c.555	p.Y185*	0.998	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	149	0	0	105	23	17.69	-	-	-	C	7050726	A	C	7050726	4	2	530	1	0	0	0	0	0	1	0	0	8659	108	4	5	8912	5	LAMA1	18	7050726	Nonsense_Mutation	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09		7050726	71026522	20	47214										
ZNF516	0	genome.wustl.edu	37	chr18	74091656	74091656	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gggaaaggaaaaccaaattgCttctgatgcttttgtaacca	9	7	1	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	18	74091656	74091656	C	A	SNP	ZNF516	ENST00000443185	human	ensembl	69_37n	-1	known	missense	c.2414	p.S805I	0.082	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493	30	0	0	49	10	16.95	-	-	-	A	74091656	C	A	74091656	3	1	530	1	0	0	0	0	1	0	0	0	18056	797	28	4	1094	4	ZNF516	18	74091656	Missense_Mutation	SNP	C	TCGA-BH-A0E0-01A-11W-A071-09	67040930	74091656	3985592	21	47215										
ZNF808	0	genome.wustl.edu	37	chr19	53056786	53056786	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gccccaaatccatatttctaAtaactatgggaataatcccc	4	12	1	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	19	53056786	53056786	A	G	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	missense	c.410	p.N137S	0.545	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	431	0	0	385	87	18.39	-	-	-	G	53056786	A	G	53056786	3	3	530	1	0	0	0	0	1	0	0	0	18266	101	4	5	627	5	ZNF808	19	53056786	Missense_Mutation	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09		53056786	6072197	22	47216										
ZNF470	0	genome.wustl.edu	37	chr19	57089741	57089741	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	attcatacaggagagaaaccTtatgagtgtaaggaatgtag	11	4	1	2			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	19	57089741	57089741	T	C	SNP	ZNF470	ENST00000330619	human	ensembl	69_37n	1	known	silent	c.1944	p.P648	0.960	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	171	0	0	64	27	29.67	-	-	-	C	57089741	T	C	57089741	2	2	530	1	0	0	0	0	0	0	0	1	18025	1596	56	5		5	ZNF470	19	57089741	Silent	SNP	T	TCGA-BH-A0E0-01A-11W-A071-09	4032955	57089741	2039242	23	47217										
ZNF548	0	genome.wustl.edu	37	chr19	57910907	57910907	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	accagagagtccacacgggaGaaaggccttatgagtgcagc	13	10	0	3			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	19	57910907	57910907	G	C	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	missense	c.1288	p.E430Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	666	2	0.3	336	88	20.75	-	-	-	C	57910907	G	C	57910907	3	2	530	1	0	0	0	0	1	0	0	0	18076	943	33	2	1302	2	ZNF548	19	57910907	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09	821166	57910907	1218076	24	47218										
MXRA5	0	genome.wustl.edu	37	chrX	3238686	3238686	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	aacttactaggaatgctgggTttggacatgtgcaatgggag	14	5	0	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	X	3238686	3238686	T	G	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5040	p.K1680N	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	669	2	0.3	326	68	17.26	-	-	-	G	3238686	T	G	3238686	3	3	530	1	0	0	0	0	1	0	0	0	10075	1722	60	5	3458	5	MXRA5	23	3238686	Missense_Mutation	SNP	T	TCGA-BH-A0E0-01A-11W-A071-09		3238686	152031874	25	47219										
MXRA5	0	genome.wustl.edu	37	chrX	3239606	3239606	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	ccaggttggagttcctggaaAgcctacaggagaggattctt	13	8	1	1			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	bf8ee52e-4c02-4228-a357-0617a13a73bf	X	3239606	3239606	A	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.4120	p.F1374I	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	174	0	0	95	25	20.83	-	-	-	T	3239606	A	T	3239606	3	4	530	1	0	0	0	0	1	0	0	0	10075	72	3	5	4378	5	MXRA5	23	3239606	Missense_Mutation	SNP	A	TCGA-BH-A0E0-01A-11W-A071-09	920	3239606	152030954	26	47220										
SLC16A2	0	genome.wustl.edu	37	chrX	73744298	73744298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.98084598061592	0.738191632928475	9.59649122807017	0	1	1	0	gggccactactttcaacgccGcctgggtctggccaatggtg	13	13	2	0			TCGA-BH-A0E0-01A-11W-A071-09	TCGA-BH-A0E0-11A-13W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4a0943c-0124-4474-b7cf-2d87164056db	f587a6a2-4476-4aa2-9a3d-eb131df46c0d	X	73744298	73744298	G	A	SNP	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	missense	c.902	p.R301H	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	76	0	0	49	15	23.44	-	-	-	A	73744298	G	A	73744298	3	1	530	1	0	0	0	0	1	0	0	0	14497	1087	38	1	912	1	SLC16A2	23	73744298	Missense_Mutation	SNP	G	TCGA-BH-A0E0-01A-11W-A071-09	70504692	73744298	81526262	27	47221										
UBR4	0	genome.wustl.edu	37	chr1	19468234	19468234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	atccctgatgactgcattttCtcatctgcatcatcatcgtc	5	13	4	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	19468234	19468234	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.8217	p.E2739D	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	104	0	0	96	53	35.57	-	-	-	G	19468234	C	G	19468234	3	3	531	1	0	0	0	0	1	0	0	0	17001	912	32	2	7538	2	UBR4	1	19468234	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		19468234	229782387	1	47222										
OSCP1	0	genome.wustl.edu	37	chr1	36915874	36915874	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ctcacctttgcgggccttgtCtcccgggatgttctgggccc	12	15	3	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	36915874	36915874	C	G	SNP	OSCP1	ENST00000235532	human	ensembl	69_37n	-1	known	missense	c.97	p.D33H	1.000	pfam_OSCP1	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	68	0	0	24	16	39.02	-	-	-	G	36915874	C	G	36915874	3	3	531	1	0	0	0	0	1	0	0	0	11359	913	32	2	1242	2	OSCP1	1	36915874	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09	17447640	36915874	212334747	2	47223										
HRNR	0	genome.wustl.edu	37	chr1	152186699	152186699	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gttgaccgtagccagaggacTgtcctgagcgagactctcgg	14	11	1	4			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	11397279-b38a-4ec6-b121-21fda5625386	1	152186699	152186699	T	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.7406	p.Q2469L	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	32	0	0	24	5	17.24	-	-	-	A	152186699	T	A	152186699	3	1	531	1	0	0	0	0	1	0	0	0	7410	1580	55	5	1150	5	HRNR	1	152186699	Missense_Mutation	SNP	T	TCGA-BH-A0E1-01A-11W-A071-09	115270825	152186699	97063922	3	47224										
UFC1	0	genome.wustl.edu	37	chr1	161127913	161127913	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ttcatgtccctctcatagggGtggcaaaatatgcctgacgg	11	10	2	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	161127913	161127913	G	C	SNP	UFC1	ENST00000368003	human	ensembl	69_37n	1	known	missense	c.335	p.G112A	1.000	pfam_Ufc1,superfamily_UBQ-conjugating_enzyme/RWD,pirsf_Ufc1	pfam_Ufc1,superfamily_UBQ-conjugating_enzyme/RWD,pirsf_Ufc1	-	no_errors	UFC1	HGNC	ENSG00000143222	78	0	0	93	16	14.68	-	-	-	C	161127913	G	C	161127913	3	2	531	1	0	0	0	0	1	0	0	0	17031	1261	44	4	353	4	UFC1	1	161127913	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	8941214	161127913	88122708	4	47225										
DDR2	0	genome.wustl.edu	37	chr1	162731228	162731228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	acctggatgatgttcagtgaGatcaccttccaatcaggtag	10	9	3	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	162731228	162731228	G	C	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.1083	p.E361D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	70	0	0	183	40	17.94	-	-	-	C	162731228	G	C	162731228	3	2	531	1	0	0	0	0	1	0	0	0	4368	933	33	2	1109	2	DDR2	1	162731228	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	1603315	162731228	86519393	5	47226										
SERPINC1	0	genome.wustl.edu	37	chr1	173886366	173886366	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	acccctcttacctttttccaGaggttacagttcctatcaca	4	14	2	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	173886366	173886366	G	A	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.32	p.S11F	0.001	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	78	0	0	120	25	17.24	-	-	-	A	173886366	G	A	173886366	3	1	531	1	0	0	0	0	1	0	0	0	14197	942	33	2	1390	2	SERPINC1	1	173886366	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	11155138	173886366	75364255	6	47227										
IL24	0	genome.wustl.edu	37	chr1	207076353	207076354	+	Frame_Shift_Ins	INS	-	-	G													0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	cagctctgaccaaagcccttINSggggaagtggacattcttct							TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	207076353	207076354	-	G	INS	IL24	ENST00000294984	human	ensembl	69_37n	1	known	frame_shift_ins	c.570_571	p.E191fs	0.996:1.000	superfamily_4_helix_cytokine-like_core,prints_Interleukin-24	superfamily_4_helix_cytokine-like_core,prints_Interleukin-24	-	no_errors	IL24	HGNC	ENSG00000162892	93	0	0	184	23	11.11	-	-	-	G	207076354	-	G	207076353	7	5	531	1	0	1	1	0	0	0	0	0	7731	1799	63	0	595	0	IL24	1	207076353	Frame_Shift_Ins	INS	-	TCGA-BH-A0E1-01A-11W-A071-09	33189987	207076353	42174268	7	47228										
PCNXL2	0	genome.wustl.edu	37	chr1	233344363	233344363	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	cctggctttggcccctgtatCaagaagcaaaataaggccac	9	12	1	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	1	233344363	233344363	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.2764	p.D922H	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	90	0	0	217	62	22.22	-	-	-	G	233344363	C	G	233344363	3	3	531	1	0	0	0	0	1	0	0	0	11665	826	29	2	3737	2	PCNXL2	1	233344363	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09	26268010	233344363	15906258	8	47229										
APOB	0	genome.wustl.edu	37	chr2	21236250	21236250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	aagtagggacttggaactctCgagatggcagatggaatccc	13	8	1	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	2	21236250	21236250	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.3998	p.R1333Q	0.007	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	213	0	0	198	105	34.54	-	-	-	T	21236250	C	T	21236250	3	4	531	1	0	0	0	0	1	0	0	0	787	884	31	1	9713	1	APOB	2	21236250	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		21236250	221963123	9	47230										
ZNF513	0	genome.wustl.edu	37	chr2	27601436	27601437	+	Frame_Shift_Ins	INS	-	-	G													0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	caggtcgggcagggaggagtINSggggggccctgcgtgggtac							TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	2	27601436	27601437	-	G	INS	ZNF513	ENST00000323703	human	ensembl	69_37n	-1	known	frame_shift_ins	c.697_696	p.T232fs	0.997:0.998	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795	23	0	0	11	2	15.38	-	-	-	G	27601437	-	G	27601436	7	5	531	1	0	1	1	0	0	0	0	0	18054	1696	59	0	936	0	ZNF513	2	27601436	Frame_Shift_Ins	INS	-	TCGA-BH-A0E1-01A-11W-A071-09	6365186	27601436	215597937	10	47231										
ALK	0	genome.wustl.edu	37	chr2	29917810	29917810	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	atgcggcgccaggaccagctCtggttcctgaggtcatgcag	14	12	2	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	2	29917810	29917810	C	T	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	silent	c.858	p.Q286	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,pfscan_MAM_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	98	0	0	99	34	25.56	-	-	-	T	29917810	C	T	29917810	2	4	531	1	0	0	0	0	0	0	0	1	525	912	32	2		2	ALK	2	29917810	Silent	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09	2316374	29917810	213281563	11	47232										
DGKG	0	genome.wustl.edu	37	chr3	185985540	185985540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	agttccccaccgtcacacaaCgttgataattcacatttgcg	6	13	2	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	3	185985540	185985540	C	T	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	silent	c.1143	p.T381	0.005	smart_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	106	0	0	69	29	29.29	-	-	-	T	185985540	C	T	185985540	2	4	531	1	0	0	0	0	0	0	0	1	4505	523	19	1		1	DGKG	3	185985540	Silent	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		185985540	12036890	12	47233										
PPARGC1A	0	genome.wustl.edu	37	chr4	23814725	23814725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gcgtgcggtgtctgtagtggCttgactcatagtaatagcag	14	7	2	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	4	23814725	23814725	C	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	missense	c.1817	p.S606N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	156	0	0	159	79	33.19	-	-	-	T	23814725	C	T	23814725	3	4	531	1	0	0	0	0	1	0	0	0	12373	797	28	4	599	4	PPARGC1A	4	23814725	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		23814725	167339551	13	47234										
TMEM167A	0	genome.wustl.edu	37	chr5	82352947	82352947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ggccattactatacagcataCtgcaacataaggactcttcc	6	12	1	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	5	82352947	82352947	C	T	SNP	TMEM167A	ENST00000502346	human	ensembl	69_37n	-1	known	missense	c.175	p.V59I	0.023	NULL	pfam_DUF1242	-	no_errors	TMEM167A	HGNC	ENSG00000174695	75	0	0	100	28	21.88	-	-	-	T	82352947	C	T	82352947	3	4	531	1	0	0	0	0	1	0	0	0	16176	565	20	4	47	4	TMEM167A	5	82352947	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		82352947	98562313	14	47235										
ZBTB22	0	genome.wustl.edu	37	chr6	33284027	33284027	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	tgcagaagctgcaaatgcctCttgggaggaagatgagaaat	13	6	1	3			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	6	33284027	33284027	C	T	SNP	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	missense	c.667	p.E223K	0.990	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	50	0	0	22	15	40.54	-	-	-	T	33284027	C	T	33284027	3	4	531	1	0	0	0	0	1	0	0	0	17626	922	32	2	1241	2	ZBTB22	6	33284027	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		33284027	137831040	15	47236										
SIM1	0	genome.wustl.edu	37	chr6	100897266	100897266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ccgccacaggtgaggccggcGttacgcttggccaagacgca	14	14	0	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	6	100897266	100897266	G	A	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	silent	c.516	p.N172	0.816	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	29	0	0	17	13	43.33	-	-	-	A	100897266	G	A	100897266	2	1	531	1	0	0	0	0	0	0	0	1	14412	1136	40	1		1	SIM1	6	100897266	Silent	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	67613239	100897266	70217801	16	47237										
MTHFD1L	0	genome.wustl.edu	37	chr6	151247259	151247259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gtattgtctttcccctcagtGacattgagatttcaagagga	9	8	3	3			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	6	151247259	151247259	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	missense	c.1084	p.D362N	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	115	0	0	112	42	27.27	-	-	-	A	151247259	G	A	151247259	3	1	531	1	0	0	0	0	1	0	0	0	10000	1304	45	2	1126	2	MTHFD1L	6	151247259	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	50349993	151247259	19867808	17	47238										
ESYT2	0	genome.wustl.edu	37	chr7	158552764	158552764	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	agcaccttgtcgaggtttgaCgcatttggcattaacgtgag	12	8	0	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	7	158552764	158552764	C	T	SNP	ESYT2	ENST00000251527	human	ensembl	69_37n	-1	known	silent	c.1452	p.A484	0.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	ESYT2	HGNC	ENSG00000117868	107	0	0	108	44	28.95	-	-	-	T	158552764	C	T	158552764	2	4	531	1	0	0	0	0	0	0	0	1	5302	523	19	1		1	ESYT2	7	158552764	Silent	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		158552764	585899	18	47239										
VPS13B	0	genome.wustl.edu	37	chr8	100520093	100520093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	caccttgttggttcgacccaTcagcaagcaggaccctttca	8	14	2	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	8	100520093	100520093	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.4253	p.I1418T	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	89	0	0	184	25	11.96	-	-	-	C	100520093	T	C	100520093	3	2	531	1	0	0	0	0	1	0	0	0	17287	1435	50	5	4553	5	VPS13B	8	100520093	Missense_Mutation	SNP	T	TCGA-BH-A0E1-01A-11W-A071-09		100520093	45843929	19	47240										
ARHGAP1	0	genome.wustl.edu	37	chr11	46709754	46709755	+	Frame_Shift_Ins	INS	-	-	G													0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ctgtggtcgagctggtggctINSggggggcattcgacaggcac							TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	11	46709754	46709755	-	G	INS	ARHGAP1	ENST00000311956	human	ensembl	69_37n	-1	known	frame_shift_ins	c.286_285	p.S95fs	0.881:0.320	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220	19	0	0	13	3	18.75	-	-	-	G	46709755	-	G	46709754	7	5	531	1	0	1	1	0	0	0	0	0	863	1580	55	0	1073	0	ARHGAP1	11	46709754	Frame_Shift_Ins	INS	-	TCGA-BH-A0E1-01A-11W-A071-09		46709754	88296762	20	47241										
OR8H2	0	genome.wustl.edu	37	chr11	55872938	55872938	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gttattatgtccaaaaggctCtgcctcgctctcatcactgg	8	12	3	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	11	55872938	55872938	C	T	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	silent	c.420	p.L140	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	258	0	0	327	155	32.16	-	-	-	T	55872938	C	T	55872938	2	4	531	1	0	0	0	0	0	0	0	1	11311	900	32	2		2	OR8H2	11	55872938	Silent	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09	9163184	55872938	79133578	21	47242										
NCAPD2	0	genome.wustl.edu	37	chr12	6630248	6630248	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gagtcagaggagaccaggctCttgaatatcttaggacttat	11	7	3	3			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	12	6630248	6630248	C	G	SNP	NCAPD2	ENST00000315579	human	ensembl	69_37n	1	known	silent	c.1686	p.L562	0.649	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	66	0	0	48	17	26.15	-	-	-	G	6630248	C	G	6630248	2	3	531	1	0	0	0	0	0	0	0	1	10277	900	32	2		2	NCAPD2	12	6630248	Silent	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		6630248	127221647	22	47243										
CHD4	0	genome.wustl.edu	37	chr12	6702280	6702280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	agactgattgttcttcagccGatgggcttcatccacgatga	10	10	3	3			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	12	6702280	6702280	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2629	p.R877W	0.999	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	198	1	0.5	184	81	30.57	-	-	-	A	6702280	G	A	6702280	3	1	531	1	0	0	0	0	1	0	0	0	3356	1057	37	1	3205	1	CHD4	12	6702280	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	72032	6702280	127149615	23	47244										
TAS2R10	0	genome.wustl.edu	37	chr12	10978407	10978407	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	actgtgtcattcttcgttttAtaatcattaagaatcttcgc	5	8	4	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	12	10978407	10978407	A	C	SNP	TAS2R10	ENST00000240619	human	ensembl	69_37n	-1	known	nonsense	c.462	p.Y154*	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R10	HGNC	ENSG00000121318	124	0	0	189	31	13.96	-	-	-	C	10978407	A	C	10978407	4	2	531	1	0	0	0	0	0	1	0	0	15658	456	16	5	465	5	TAS2R10	12	10978407	Nonsense_Mutation	SNP	A	TCGA-BH-A0E1-01A-11W-A071-09	4276127	10978407	122873488	24	47245										
KRT71	0	genome.wustl.edu	37	chr12	52940265	52940265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ctccccgctgctcagcatcaGcgatggctgtctccaggttg	11	15	3	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	12	52940265	52940265	G	A	SNP	KRT71	ENST00000267119	human	ensembl	69_37n	-1	known	missense	c.1130	p.A377V	0.026	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648	43	0	0	18	15	45.45	-	-	-	A	52940265	G	A	52940265	3	1	531	1	0	0	0	0	1	0	0	0	8537	971	34	4	453	4	KRT71	12	52940265	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09	41961858	52940265	80911630	25	47246										
ISM2	0	genome.wustl.edu	37	chr14	77948868	77948868	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	cccctggggccctgtcttttTcctctcctttgtagtctccc	7	17	3	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	14	77948868	77948868	T	C	SNP	ISM2	ENST00000342219	human	ensembl	69_37n	-1	known	missense	c.770	p.E257G	0.964	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593	61	0	0	51	10	16.39	-	-	-	C	77948868	T	C	77948868	3	2	531	1	0	0	0	0	1	0	0	0	7915	1783	62	5	961	5	ISM2	14	77948868	Missense_Mutation	SNP	T	TCGA-BH-A0E1-01A-11W-A071-09		77948868	29400672	26	47247										
ITGA11	0	genome.wustl.edu	37	chr15	68631959	68631959	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ccattccagtcataggcaccGacggctcccagcagaacccc	8	18	1	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	15	68631959	68631959	G	T	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.1155	p.V385	0.014	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	50	0	0	22	11	33.33	-	-	-	T	68631959	G	T	68631959	2	4	531	1	0	0	0	0	0	0	0	1	7928	1045	37	3		3	ITGA11	15	68631959	Silent	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09		68631959	33899433	27	47248										
MAPK3	0	genome.wustl.edu	37	chr16	30129759	30129759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gtggatgtacttgaggccccGcaggatctggtagaggaagt	16	7	1	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	16	30129759	30129759	G	A	SNP	MAPK3	ENST00000263025	human	ensembl	69_37n	-1	known	missense	c.454	p.R152W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK3	HGNC	ENSG00000102882	52	0	0	24	14	36.84	-	-	-	A	30129759	G	A	30129759	3	1	531	1	0	0	0	0	1	0	0	0	9350	1086	38	1	766	1	MAPK3	16	30129759	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09		30129759	60224994	28	47249										
VAMP2	0	genome.wustl.edu	37	chr17	8064834	8064834	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	gcgcaaatcactcccaagatGatcatcatctgggggtgaga	11	10	4	3			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	17	8064834	8064834	G	A	SNP	VAMP2	ENST00000316509	human	ensembl	69_37n	-1	known	silent	c.291	p.I97	0.998	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP2	HGNC	ENSG00000220205	67	0	0	28	16	36.36	-	-	-	A	8064834	G	A	8064834	2	1	531	1	0	0	0	0	0	0	0	1	17210	1280	45	2		2	VAMP2	17	8064834	Silent	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09		8064834	73130376	29	47250										
TMEM106A	0	genome.wustl.edu	37	chr17	41368593	41368593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	cttctcctacacattggcccTttggccagtgaacaggtgac	9	13	1	2			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	17	41368593	41368593	T	C	SNP	TMEM106A	ENST00000331615	human	ensembl	69_37n	1	known	silent	c.555	p.P185	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988	232	1	0.43	124	77	38.31	-	-	-	C	41368593	T	C	41368593	2	2	531	1	0	0	0	0	0	0	0	1	16115	1596	56	5		5	TMEM106A	17	41368593	Silent	SNP	T	TCGA-BH-A0E1-01A-11W-A071-09	33303759	41368593	39826617	30	47251										
DDX49	0	genome.wustl.edu	37	chr19	19031392	19031392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ctttgtccccaacccaggtcGagactgcttgggctgtgcta	11	13	0	1			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	19	19031392	19031392	G	A	SNP	DDX49	ENST00000247003	human	ensembl	69_37n	1	known	missense	c.119	p.R40Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX49	HGNC	ENSG00000105671	24	0	0	18	8	29.63	-	-	-	A	19031392	G	A	19031392	3	1	531	1	0	0	0	0	1	0	0	0	4397	1058	37	1	125	1	DDX49	19	19031392	Missense_Mutation	SNP	G	TCGA-BH-A0E1-01A-11W-A071-09		19031392	40097591	31	47252										
ZNF880	0	genome.wustl.edu	37	chr19	52888437	52888438	+	Frame_Shift_Ins	INS	-	-	A													0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ttcagccacaagttatacctINSaaaaaaacatgagagaattc							TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-11A-13W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	11397279-b38a-4ec6-b121-21fda5625386	19	52888437	52888438	-	A	INS	ZNF880	ENST00000422689	human	ensembl	69_37n	1	known	frame_shift_ins	c.1604_1605	p.H538fs	0.005:0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	73	0	0	17	2	10.53	-	-	-	A	52888438	-	A	52888437	7	5	531	1	0	1	1	0	0	0	0	0	18290	1522	53	0	1618	0	ZNF880	19	52888437	Frame_Shift_Ins	INS	-	TCGA-BH-A0E1-01A-11W-A071-09	33857045	52888437	6240546	32	47253										
TLR7	0	genome.wustl.edu	37	chrX	12903835	12903835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	11	0.00350635758590907	2.9604347826087	5.15833333333333	2.18470588235294	1	1	7	ttcccacgaacaccacgaacCtcaccctcaccattaaccac	2	20	2	0			TCGA-BH-A0E1-01A-11W-A071-09	TCGA-BH-A0E1-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48706085-54be-4ea7-922e-46757a0b2979	e1bc14b6-02fc-4f82-89c6-c08d7482449f	X	12903835	12903835	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.208	p.L70F	1.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	402	0	0	383	183	32.28	-	-	-	T	12903835	C	T	12903835	3	4	531	1	0	0	0	0	1	0	0	0	16051	681	24	4	214	4	TLR7	23	12903835	Missense_Mutation	SNP	C	TCGA-BH-A0E1-01A-11W-A071-09		12903835	142366725	33	47254										
SELP	0	genome.wustl.edu	37	chr1	169588391	169588391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gatcagggcactgaagcaaaGgagttgggaaattccaaaga	13	6	1	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	1	169588391	169588391	G	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.70	p.L24F	0.235	NULL	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	116	0	0	112	54	32.53	-	-	-	A	169588391	G	A	169588391	3	1	532	1	0	0	0	0	1	0	0	0	14107	1000	35	4	2482	4	SELP	1	169588391	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		169588391	79662230	1	47255										
NEB	0	genome.wustl.edu	37	chr2	152499685	152499686	+	Frame_Shift_Ins	INS	-	-	T													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gattcatggtaatagcattgINSttttttgccaaaaccattgg							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	152499685	152499686	-	T	INS	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8139_8138	p.N2713fs	0.998:1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	233	0	0	136	26	16.05	-	-	-	T	152499686	-	T	152499685	7	5	532	1	0	1	1	0	0	0	0	0	10374	1368	48	0	18047	0	NEB	2	152499685	Frame_Shift_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09		152499685	90699688	2	47256										
DCAF17	0	genome.wustl.edu	37	chr2	172291597	172291597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tctttatgtcttttaggaaaGtactaaatttaagaatgtct	6	4	3	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	172291597	172291597	G	A	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	1	known	missense	c.131	p.S44N	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	109	0	0	29	26	46.43	-	-	-	A	172291597	G	A	172291597	3	1	532	1	0	0	0	0	1	0	0	0	4301	1029	36	4	137	4	DCAF17	2	172291597	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	19791912	172291597	70907776	3	47257										
SP140	0	genome.wustl.edu	37	chr2	231176276	231176276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	ggggtttgtacaagacatgcGcctcatcttccagaaccaca	9	12	2	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	2	231176276	231176276	G	A	SNP	SP140	ENST00000392045	human	ensembl	69_37n	1	known	missense	c.2471	p.R824H	0.655	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	213	0	0	47	36	43.37	-	-	-	A	231176276	G	A	231176276	3	1	532	1	0	0	0	0	1	0	0	0	15051	1087	38	1	2690	1	SP140	2	231176276	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	58884679	231176276	12023097	4	47258										
GLT8D1	0	genome.wustl.edu	37	chr3	52728920	52728920	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gttgaatttgcctgttgggtCtggaatataccatttttccc	9	8	1	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	3	52728920	52728920	C	A	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	missense	c.1057	p.D353Y	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	122	0	0	82	40	32.79	-	-	-	A	52728920	C	A	52728920	3	1	532	1	0	0	0	0	1	0	0	0	6521	913	32	2	62	2	GLT8D1	3	52728920	Missense_Mutation	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09		52728920	145293510	5	47259										
PLXNA1	0	genome.wustl.edu	37	chr3	126735390	126735391	+	Frame_Shift_Ins	INS	-	-	C													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gtgagatccggtgcctgacaINSccccccgggcagagccctgg							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	3	126735390	126735391	-	C	INS	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	frame_shift_ins	c.3045_3046	p.G1017fs	0.554:0.981	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	16	0	0	25	4	13.79	-	-	-	C	126735391	-	C	126735390	7	5	532	1	0	1	1	0	0	0	0	0	12193	146	6	0	3103	0	PLXNA1	3	126735390	Frame_Shift_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09	74006470	126735390	71287040	6	47260										
LETM1	0	genome.wustl.edu	37	chr4	1836578	1836578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	acgtatcacagcaccttctgGaaaaacacagagaagtcttt	7	10	3	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	4	1836578	1836578	G	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.870	p.F290L	0.999	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	53	0	0	26	9	25.71	-	-	-	T	1836578	G	T	1836578	3	4	532	1	0	0	0	0	1	0	0	0	8788	1165	41	2	1389	2	LETM1	4	1836578	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		1836578	189317698	7	47261										
MAML3	0	genome.wustl.edu	37	chr4	140811265	140811265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cggccactgtcactgctgccGgattcaggagataaccattt	10	12	2	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	4	140811265	140811265	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.1325	p.P442L	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	196	0	0	89	79	46.75	-	-	-	A	140811265	G	A	140811265	3	1	532	1	0	0	0	0	1	0	0	0	9278	1116	39	1	2099	1	MAML3	4	140811265	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	138974687	140811265	50343011	8	47262										
OTP	0	genome.wustl.edu	37	chr5	76932789	76932789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	ccggtggcgcttctgcttctGttggccctgctgctggccgg	15	14	2	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	5	76932789	76932789	G	T	SNP	OTP	ENST00000306422	human	ensembl	69_37n	-1	known	missense	c.304	p.Q102K	1.000	superfamily_Homeodomain-like,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	OTP	HGNC	ENSG00000171540	82	0	0	34	13	27.66	-	-	-	T	76932789	G	T	76932789	3	4	532	1	0	0	0	0	1	0	0	0	11383	1386	48	4	681	4	OTP	5	76932789	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		76932789	103982471	9	47263										
REV3L	0	genome.wustl.edu	37	chr6	111695272	111695272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	actgttccgctatgcacacaAtctgctgctgactgtctttg	8	12	2	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	6	111695272	111695272	A	G	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.4286	p.I1429T	0.958	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	384	0	0	275	83	23.18	-	-	-	G	111695272	A	G	111695272	3	3	532	1	0	0	0	0	1	0	0	0	13323	101	4	5	5186	5	REV3L	6	111695272	Missense_Mutation	SNP	A	TCGA-BH-A0E2-01A-11W-A071-09		111695272	59419795	10	47264										
KPNA5	0	genome.wustl.edu	37	chr6	117050794	117050794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tgttatggactccaaaatagTccaagtggctttaaatggac	9	7	0	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	6	117050794	117050794	T	C	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	missense	c.1322	p.V441A	0.999	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	200	0	0	166	113	40.5	-	-	-	C	117050794	T	C	117050794	3	2	532	1	0	0	0	0	1	0	0	0	8486	1667	58	5	1372	5	KPNA5	6	117050794	Missense_Mutation	SNP	T	TCGA-BH-A0E2-01A-11W-A071-09	5355522	117050794	54064273	11	47265										
FAM188B	0	genome.wustl.edu	37	chr7	30818062	30818062	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cctcagggcttaaagaagacAtgtgtgaccatggaccagga	12	9	1	3			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	7	30818062	30818062	A	C	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	silent	c.78	p.T26	0.166	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	76	0	0	62	26	29.55	-	-	-	C	30818062	A	C	30818062	2	2	532	1	0	0	0	0	0	0	0	1	5556	204	8	5		5	FAM188B	7	30818062	Silent	SNP	A	TCGA-BH-A0E2-01A-11W-A071-09		30818062	128320601	12	47266										
RB1CC1	0	genome.wustl.edu	37	chr8	53558327	53558327	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	attctttcttttttcttgctCttcaagttgttctagaaact	4	8	6	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	8	53558327	53558327	C	T	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.3922	p.E1308K	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	142	0	0	102	37	26.62	-	-	-	T	53558327	C	T	53558327	3	4	532	1	0	0	0	0	1	0	0	0	13182	922	32	2	898	2	RB1CC1	8	53558327	Missense_Mutation	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09		53558327	92805695	13	47267										
TSNARE1	0	genome.wustl.edu	37	chr8	143425597	143425597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gctccacacgcggtacctgcGagtgggctcggccttcagca	13	15	1	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	8	143425597	143425597	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	69_37n	-1	known	missense	c.475	p.R159C	0.017	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	46	0	0	25	4	13.79	-	-	-	A	143425597	G	A	143425597	3	1	532	1	0	0	0	0	1	0	0	0	16726	1058	37	1	1106	1	TSNARE1	8	143425597	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	89867270	143425597	2938425	14	47268										
APTX	0	genome.wustl.edu	37	chr9	32987555	32987555	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	ccctcacctttttgataggtGcatcttttcccttctttagg	6	12	3	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	9	32987555	32987555	G	C	SNP	APTX	ENST00000379819	human	ensembl	69_37n	-1	known	missense	c.512	p.A171G	0.000	NULL	pfam_Histidine_triad_HIT,superfamily_HIT-like,superfamily_SMAD_FHA_domain,pfscan_Histidine_triad_HIT	-	no_errors	APTX	HGNC	ENSG00000137074	277	0	0	240	124	34.07	-	-	-	C	32987555	G	C	32987555	3	2	532	1	0	0	0	0	1	0	0	0	822	1319	46	4	587	4	APTX	9	32987555	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		32987555	108225876	15	47269										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	49	0	0	57	24	29.63	-	-	-	G	8111514	-	G	8111513	7	5	532	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09		8111513	127423234	16	47270										
MLLT10	0	genome.wustl.edu	37	chr10	21884363	21884363	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tctgttccgcatgatcgttaTaataaggtacagtggatatt	9	6	1	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	21884363	21884363	T	A	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	nonsense	c.399	p.Y133*	0.985	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	162	0	0	105	57	35.19	-	-	-	A	21884363	T	A	21884363	4	1	532	1	0	0	0	0	0	1	0	0	9697	1413	49	5	413	5	MLLT10	10	21884363	Nonsense_Mutation	SNP	T	TCGA-BH-A0E2-01A-11W-A071-09	13772850	21884363	113650384	17	47271										
TET1	0	genome.wustl.edu	37	chr10	70406122	70406122	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tttcctactgtatttgggaaAatttcttcctcgaccaaaat	5	9	1	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	70406122	70406122	A	G	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.3636	p.K1212	0.912	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	223	0	0	136	56	29.17	-	-	-	G	70406122	A	G	70406122	2	3	532	1	0	0	0	0	0	0	0	1	15864	11	1	5		5	TET1	10	70406122	Silent	SNP	A	TCGA-BH-A0E2-01A-11W-A071-09	48521759	70406122	65128625	18	47272										
DLG5	0	genome.wustl.edu	37	chr10	79570872	79570873	+	Frame_Shift_Ins	INS	-	-	G													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tggagctgctctgcttggctINSgggggggtgctaggcccctc							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	79570872	79570873	-	G	INS	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4443_4442	p.A1482fs	0.852:0.901	superfamily_PDZ	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	28	0	0	27	3	10	-	-	-	G	79570873	-	G	79570872	7	5	532	1	0	1	1	0	0	0	0	0	4594	1567	55	0	1356	0	DLG5	10	79570872	Frame_Shift_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09	9164750	79570872	55963875	19	47273										
SLIT1	0	genome.wustl.edu	37	chr10	98763830	98763830	+	Frame_Shift_Del	DEL	A	A	-													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gggccaggtcctcacctcccAcatagagtggcgcctcgctg							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	10	98763830	98763830	A	-	DEL	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	frame_shift_del	c.3860	p.V1287fs	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	108	0	0	76	43	36.13	-	-	-	-	98763830	A	-	98763830	7	5	532	1	0	1	0	1	0	0	0	0	14828	159	6	0	760	0	SLIT1	10	98763830	Frame_Shift_Del	DEL	A	TCGA-BH-A0E2-01A-11W-A071-09	19192958	98763830	36770917	20	47274										
ATN1	0	genome.wustl.edu	37	chr12	7047646	7047646	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tttccctgtatcccacagaaGttggctcaggagggccgtgc	12	12	1	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	7047646	7047646	G	A	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	silent	c.2520	p.K840	0.994	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	65	0	0	23	18	43.9	-	-	-	A	7047646	G	A	7047646	2	1	532	1	0	0	0	0	0	0	0	1	1115	1020	36	4		4	ATN1	12	7047646	Silent	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		7047646	126804249	21	47275										
SCN8A	0	genome.wustl.edu	37	chr12	52145348	52145348	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	accatcctatgacaccacaaTttgaacatgtcttggctgta	6	11	1	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	52145348	52145348	T	G	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.2341	p.F781V	0.998	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	248	0	0	101	129	56.09	-	-	-	G	52145348	T	G	52145348	3	3	532	1	0	0	0	0	1	0	0	0	14012	1493	52	5	2391	5	SCN8A	12	52145348	Missense_Mutation	SNP	T	TCGA-BH-A0E2-01A-11W-A071-09	45097702	52145348	81706547	22	47276										
TPH2	0	genome.wustl.edu	37	chr12	72388322	72388322	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cgtctctgggagcatcagatGaagatgttcagaaactagcc	11	9	3	4			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	72388322	72388322	G	A	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	missense	c.1045	p.E349K	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	138	0	0	579	172	22.9	-	-	-	A	72388322	G	A	72388322	3	1	532	1	0	0	0	0	1	0	0	0	16498	1291	45	2	1075	2	TPH2	12	72388322	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	20242974	72388322	61463573	23	47277										
KCNC2	0	genome.wustl.edu	37	chr12	75444552	75444552	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tgctcactagctgaagggtcGttaggttgagctcccactct	11	11	2	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	12	75444552	75444552	G	A	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	silent	c.1233	p.N411	0.996	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	165	0	0	129	205	61.38	-	-	-	A	75444552	G	A	75444552	2	1	532	1	0	0	0	0	0	0	0	1	8069	1136	40	1		1	KCNC2	12	75444552	Silent	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	3056230	75444552	58407343	24	47278										
PCK2	0	genome.wustl.edu	37	chr14	24568928	24568928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tggatgaggtttgacagtgaAggtgagggactctcagatca	15	5	2	5			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	24568928	24568928	A	C	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	missense	c.1014	p.E338D	0.901	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	143	0	0	62	43	40.57	-	-	-	C	24568928	A	C	24568928	3	2	532	1	0	0	0	0	1	0	0	0	11655	86	3	5	1036	5	PCK2	14	24568928	Missense_Mutation	SNP	A	TCGA-BH-A0E2-01A-11W-A071-09		24568928	82780612	25	47279										
FANCM	0	genome.wustl.edu	37	chr14	45644374	45644375	+	Frame_Shift_Ins	INS	-	-	T													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gaatctaataatcttgccagINStgacacctttatcactcaca							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	45644374	45644375	-	T	INS	FANCM	ENST00000267430	human	ensembl	69_37n	1	known	frame_shift_ins	c.2417_2418	p.D807fs	0.000:0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	143	0	0	100	65	39.39	-	-	-	T	45644375	-	T	45644374	7	5	532	1	0	1	1	0	0	0	0	0	5717	1029	36	0	2471	0	FANCM	14	45644374	Frame_Shift_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09	21075446	45644374	61705166	26	47280										
CGRRF1	0	genome.wustl.edu	37	chr14	54996904	54996904	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gcactccccaagcattagaaGatgctctgtatagtgaatat	8	9	1	3			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	14	54996904	54996904	G	T	SNP	CGRRF1	ENST00000216420	human	ensembl	69_37n	1	known	missense	c.382	p.D128Y	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CGRRF1	HGNC	ENSG00000100532	147	0	0	270	36	11.76	-	-	-	T	54996904	G	T	54996904	3	4	532	1	0	0	0	0	1	0	0	0	3335	942	33	2	392	2	CGRRF1	14	54996904	Missense_Mutation	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09	9352530	54996904	52352636	27	47281										
SMYD4	0	genome.wustl.edu	37	chr17	1690265	1690266	+	In_Frame_Ins	INS	-	-	TTT													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cccatccggctcttgtgaggINSccctggagggagatcaccgt							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	17	1690265	1690266	-	TTT	INS	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	in_frame_ins	c.1723_1722	p.574in_frame_insK	1.000:0.977	pfam_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	52	0	0	31	37	54.41	-	-	-	TTT	1690266	-	TTT	1690265	7	5	532	1	0	1	1	0	0	0	0	0	14913	1203	42	0	711	0	SMYD4	17	1690265	In_Frame_Ins	INS	-	TCGA-BH-A0E2-01A-11W-A071-09		1690265	79504945	28	47282										
MED24	0	genome.wustl.edu	37	chr17	38182541	38182541	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	caagccaagccacagcacacAccgccagactgcataccttc	6	18	0	1			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	17	38182541	38182541	A	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	missense	c.1853	p.V618E	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	177	0	0	35	45	55.56	-	-	-	T	38182541	A	T	38182541	3	4	532	1	0	0	0	0	1	0	0	0	9513	159	6	5	1148	5	MED24	17	38182541	Missense_Mutation	SNP	A	TCGA-BH-A0E2-01A-11W-A071-09	36492276	38182541	43012669	29	47283										
EMILIN2	0	genome.wustl.edu	37	chr18	2909695	2909695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	tttctctgctccaggagctcCggtgccttctctggtgtctt	10	13	3	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	18	2909695	2909695	C	T	SNP	EMILIN2	ENST00000254528	human	ensembl	69_37n	1	known	missense	c.2702	p.P901L	0.000	smart_C1q,pfscan_C1q	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205	63	0	0	21	6	22.22	-	-	-	T	2909695	C	T	2909695	3	4	532	1	0	0	0	0	1	0	0	0	5131	652	23	1	2728	1	EMILIN2	18	2909695	Missense_Mutation	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09		2909695	75167553	30	47284										
MYOM1	0	genome.wustl.edu	37	chr18	3090726	3090726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	agctggaaagtgtacgttccCtcatcctcatcctgtagctt	8	12	2	0			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	18	3090726	3090726	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	silent	c.3939	p.E1313	1.000	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	147	0	0	42	47	52.81	-	-	-	T	3090726	C	T	3090726	2	4	532	1	0	0	0	0	0	0	0	1	10163	680	24	4		4	MYOM1	18	3090726	Silent	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09	181031	3090726	74986522	31	47285										
LONP1	0	genome.wustl.edu	37	chr19	5708352	5708352	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	gctgcccgcacagaggcccaCctgtagagagggttcaaggc	14	13	1	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	19	5708352	5708352	C	T	SNP	LONP1	ENST00000360614	human	ensembl	69_37n	-1	known	splice_site	c.932+1	e5+1	1.000	-	-	-	no_errors	LONP1	HGNC	ENSG00000196365	14	0	0	3	8	72.73	-	-	-	T	5708352	C	T	5708352	5	4	532	1	0	0	0	0	0	0	1	0	8958	521	18	4	2002	4	LONP1	19	5708352	Splice_Site	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09		5708352	53420631	32	47286										
SHANK1	0	genome.wustl.edu	37	chr19	51165806	51165806	+	Frame_Shift_Del	DEL	C	C	-													0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	ggaggctgagggtgaggtggCccctggggccgcagcggctg							TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	19	51165806	51165806	C	-	DEL	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	frame_shift_del	c.5926	p.A1976fs	0.455	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	19	0	0	9	2	18.18	-	-	-	-	51165806	C	-	51165806	7	5	532	1	0	1	0	1	0	0	0	0	14353	739	26	0	587	0	SHANK1	19	51165806	Frame_Shift_Del	DEL	C	TCGA-BH-A0E2-01A-11W-A071-09	45457454	51165806	7963177	33	47287										
BPI	0	genome.wustl.edu	37	chr20	36962894	36962894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cttgtgctgcccagggttaaCggtaaggaactttgaagaaa	12	7	0	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	20	36962894	36962894	C	T	SNP	BPI	ENST00000417318	human	ensembl	69_37n	1	novel	missense	c.824	p.T275M	0.017	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BPI	HGNC	ENSG00000101425	312	2	0.63	291	160	35.48	-	-	-	T	36962894	C	T	36962894	3	4	532	1	0	0	0	0	1	0	0	0	1498	550	19	1	1397	1	BPI	20	36962894	Missense_Mutation	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09		36962894	26062626	34	47288										
VCX	0	genome.wustl.edu	37	chrX	7811259	7811259	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	cggaagatgagtccaaagccGagagcctcgggacctccggc	14	13	0	3			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	X	7811259	7811259	G	C	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	silent	c.15	p.P5	0.001	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	35	0	0	23	14	37.84	-	-	-	C	7811259	G	C	7811259	2	2	532	1	0	0	0	0	0	0	0	1	17239	1045	37	3		3	VCX	23	7811259	Silent	SNP	G	TCGA-BH-A0E2-01A-11W-A071-09		7811259	147459301	35	47289										
GDI1	0	genome.wustl.edu	37	chrX	153668416	153668416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	2	0.968620996923403	0.790730337078652	0	0.903691813804173	0.428571428571429	1	0	ccagcatgcgtgacgtctacCggaagtttgatctgggccag	13	11	2	2			TCGA-BH-A0E2-01A-11W-A071-09	TCGA-BH-A0E2-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2703ce22-3ffa-4094-b3f1-1f573b5204a9	ff7d656e-eef3-42eb-84e8-545536c8aec0	X	153668416	153668416	C	T	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	1	known	missense	c.517	p.R173W	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	162	0	0	41	11	21.15	-	-	-	T	153668416	C	T	153668416	3	4	532	1	0	0	0	0	1	0	0	0	6372	643	23	1	535	1	GDI1	23	153668416	Missense_Mutation	SNP	C	TCGA-BH-A0E2-01A-11W-A071-09	145857157	153668416	1602144	36	47290										
MTOR	0	genome.wustl.edu	37	chr1	11313969	11313969	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	catggatccgatcatcccgaTtcatgcccttctctttggcc	7	15	3	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	11313969	11313969	T	C	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.767	p.N256S	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	189	1	0.53	139	40	22.35	-	-	-	C	11313969	T	C	11313969	3	2	533	1	0	0	0	0	1	0	0	0	10026	1493	52	5	7094	5	MTOR	1	11313969	Missense_Mutation	SNP	T	TCGA-BH-A0E6-01A-11W-A050-09		11313969	237936652	1	47291										
UBR4	0	genome.wustl.edu	37	chr1	19404496	19404496	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	catgttgtaaatgagatcgaCgagggcccaaaagagaaggg	14	6	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	19404496	19404496	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.15298	p.V5100L	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	102	0	0	97	28	22.4	-	-	-	G	19404496	C	G	19404496	3	3	533	1	0	0	0	0	1	0	0	0	17001	536	19	3	265	3	UBR4	1	19404496	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	8090527	19404496	229846125	2	47292										
RAB42	0	genome.wustl.edu	37	chr1	28920546	28920547	+	Frame_Shift_Ins	INS	-	-	G													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	catcaagctagaagagggctINSgggggggtgtccggctcatc							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	28920546	28920547	-	G	INS	RAB42	ENST00000373826	human	ensembl	69_37n	1	known	frame_shift_ins	c.235_236	p.V82fs	1.000:1.000	NULL	pfam_Small_GTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060	71	0	0	65	9	12.16	-	-	-	G	28920547	-	G	28920546	7	5	533	1	0	1	1	0	0	0	0	0	13027	1580	55	0	237	0	RAB42	1	28920546	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09	9516050	28920546	220330075	3	47293										
EIF2C1	0	genome.wustl.edu	37	chr1	36372581	36372581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	atttccaaggatgcggggatGcctatccagggtcaaccttg	12	10	1	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	36372581	36372581	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.1443	p.M481I	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	287	0	0	211	40	15.87	-	-	-	A	36372581	G	A	36372581	3	1	533	1	0	0	0	0	1	0	0	0	5040	1319	46	4	1489	4	EIF2C1	1	36372581	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	7452035	36372581	212878040	4	47294										
NOTCH2	0	genome.wustl.edu	37	chr1	120484229	120484229	+	Frame_Shift_Del	DEL	G	G	-													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ttgcaagtgtaactgttgacGtagtcagagcaggtccctcc							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	120484229	120484229	G	-	DEL	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_del	c.2901	p.Y967fs	0.844	pirsf_Notch,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	118	0	0	113	42	26.42	-	-	-	-	120484229	G	-	120484229	7	5	533	1	0	1	0	1	0	0	0	0	10620	1140	40	0	4582	0	NOTCH2	1	120484229	Frame_Shift_Del	DEL	G	TCGA-BH-A0E6-01A-11W-A050-09	84111648	120484229	128766392	5	47295										
OR2T12	0	genome.wustl.edu	37	chr1	248458340	248458340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	acaagccaaacgcaccaacaCgggggcctcgcagaagaagt	11	13	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	248458340	248458340	C	T	SNP	OR2T12	ENST00000317996	human	ensembl	69_37n	-1	known	missense	c.541	p.V181M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201	401	0	0	490	100	16.86	-	-	-	T	248458340	C	T	248458340	3	4	533	1	0	0	0	0	1	0	0	0	11092	536	19	1	424	1	OR2T12	1	248458340	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	127974111	248458340	792281	6	47296										
ASXL2	0	genome.wustl.edu	37	chr2	25973203	25973203	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	cacaggcatggattttggttGttcagctggggttttcttta	12	6	2	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	2	25973203	25973203	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	nonsense	c.1222	p.Q408*	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	321	0	0	342	50	12.72	-	-	-	A	25973203	G	A	25973203	4	1	533	1	0	0	0	0	0	1	0	0	1071	1386	48	4	3093	4	ASXL2	2	25973203	Nonsense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		25973203	217226170	7	47297										
MYL1	0	genome.wustl.edu	37	chr2	211159027	211159027	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	actgtgccattgccttccttGtcaaagacacgcagaccctc	7	15	1	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	2	211159027	211159027	G	C	SNP	MYL1	ENST00000352451	human	ensembl	69_37n	-1	known	missense	c.420	p.D140E	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL1	HGNC	ENSG00000168530	292	0	0	336	53	13.62	-	-	-	C	211159027	G	C	211159027	3	2	533	1	0	0	0	0	1	0	0	0	10115	1368	48	4	176	4	MYL1	2	211159027	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	185185824	211159027	32040346	8	47298										
GBE1	0	genome.wustl.edu	37	chr3	81695559	81695559	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ttacctggaagctgcaaagaAgcttgtgatttggtaaccaa	10	7	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	3	81695559	81695559	A	C	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.766	p.F256V	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	217	0	0	173	56	24.45	-	-	-	C	81695559	A	C	81695559	3	2	533	1	0	0	0	0	1	0	0	0	6320	72	3	5	1386	5	GBE1	3	81695559	Missense_Mutation	SNP	A	TCGA-BH-A0E6-01A-11W-A050-09		81695559	116326871	9	47299										
TMCC1	0	genome.wustl.edu	37	chr3	129546708	129546708	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	agcagcagcagcagcacaagCtatttccatcatagcagagc	9	12	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	3	129546708	129546708	C	G	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.514	p.A172P	1.000	NULL	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	108	0	0	79	18	18.56	-	-	-	G	129546708	C	G	129546708	3	3	533	1	0	0	0	0	1	0	0	0	16087	797	28	4	1463	4	TMCC1	3	129546708	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	47851149	129546708	68475722	10	47300										
C3orf58	0	genome.wustl.edu	37	chr3	143708575	143708575	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	attgccaaagatggccggctCgaggccttgctggatgagtg	15	9	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	3	143708575	143708575	C	G	SNP	C3orf58	ENST00000315691	human	ensembl	69_37n	1	known	silent	c.1185	p.L395	0.015	NULL	NULL	-	no_errors	C3orf58	HGNC	ENSG00000181744	93	0	0	94	22	18.97	-	-	-	G	143708575	C	G	143708575	2	3	533	1	0	0	0	0	0	0	0	1	2256	871	31	3		3	C3orf58	3	143708575	Silent	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	14161867	143708575	54313855	11	47301										
LNX1	0	genome.wustl.edu	37	chr4	54364837	54364837	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	gatgtctcctggcagtagccGgccgtctctggcgatcaccc	12	15	3	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	54364837	54364837	G	T	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	silent	c.949	p.R317	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	87	0	0	83	15	15.31	-	-	-	T	54364837	G	T	54364837	2	4	533	1	0	0	0	0	0	0	0	1	8921	1115	39	3		3	LNX1	4	54364837	Silent	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		54364837	136789439	12	47302										
PRDM8	0	genome.wustl.edu	37	chr4	81124519	81124519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ccaagtgcaatgcctccttcCgcatgacctccgacctggtg	9	16	0	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	81124519	81124519	C	T	SNP	PRDM8	ENST00000339711	human	ensembl	69_37n	1	known	missense	c.1903	p.R635C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784	49	0	0	37	8	17.78	-	-	-	T	81124519	C	T	81124519	3	4	533	1	0	0	0	0	1	0	0	0	12543	652	23	1	1913	1	PRDM8	4	81124519	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	26759682	81124519	110029757	13	47303										
GALNT7	0	genome.wustl.edu	37	chr4	174216642	174216642	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	gggaaggtttaattcaagcaCgaagtattggtgctcagaag	13	5	2	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	174216642	174216642	C	T	SNP	GALNT7	ENST00000265000	human	ensembl	69_37n	1	known	nonsense	c.850	p.R284*	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586	149	0	0	119	21	15	-	-	-	T	174216642	C	T	174216642	4	4	533	1	0	0	0	0	0	1	0	0	6268	528	19	1	864	1	GALNT7	4	174216642	Nonsense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	93092123	174216642	16937634	14	47304										
ZFR	0	genome.wustl.edu	37	chr5	32397416	32397416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	cgcataatttacaatggaacCgaattacttttccttcatca	4	10	2	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	5	32397416	32397416	C	T	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.1742	p.R581Q	1.000	pfam_Znf_C2H2_jaz,smart_Znf_U1	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	103	0	0	115	21	15.44	-	-	-	T	32397416	C	T	32397416	3	4	533	1	0	0	0	0	1	0	0	0	17755	652	23	1	1526	1	ZFR	5	32397416	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		32397416	148517844	15	47305										
TNPO1	0	genome.wustl.edu	37	chr5	72187661	72187661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	atattcagatgctaatgcctCcactgatccagaaatggaac	7	10	1	3			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	5	72187661	72187661	C	T	SNP	TNPO1	ENST00000337273	human	ensembl	69_37n	1	known	missense	c.1726	p.P576S	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312	180	0	0	158	32	16.84	-	-	-	T	72187661	C	T	72187661	3	4	533	1	0	0	0	0	1	0	0	0	16430	855	30	2	1784	2	TNPO1	5	72187661	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	39790245	72187661	108727599	16	47306										
TCF19	0	genome.wustl.edu	37	chr6	31127319	31127320	+	Frame_Shift_Ins	INS	-	-	C													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ctacaccttccacccccccgINSccggggctggctgcacctat							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	31127319	31127320	-	C	INS	TCF19	ENST00000376255	human	ensembl	69_37n	1	known	frame_shift_ins	c.73_74	p.G26fs	0.000:0.000	superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310	13	0	0	7	3	30	-	-	-	C	31127320	-	C	31127319	7	5	533	1	0	1	1	0	0	0	0	0	15784	1087	38	0	75	0	TCF19	6	31127319	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09		31127319	139987748	17	47307										
OPRM1	0	genome.wustl.edu	37	chr6	154414532	154414532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ccttcactcgtcctgccttcGtggaaatactgctcccagcc	7	17	1	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	154414532	154414532	G	A	SNP	OPRM1	ENST00000229768	human	ensembl	69_37n	1	known	missense	c.1292	p.R431H	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	157	0	0	181	24	11.71	-	-	-	A	154414532	G	A	154414532	3	1	533	1	0	0	0	0	1	0	0	0	10960	1145	40	1	1655	1	OPRM1	6	154414532	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	123287213	154414532	16700535	18	47308										
TIAM2	0	genome.wustl.edu	37	chr6	155450938	155450938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tgcagaggactgcagtgagcCggtgcagctgctgaggtact	16	9	0	3			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	155450938	155450938	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.581	p.P194L	0.994	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	28	0	0	24	6	20	-	-	-	T	155450938	C	T	155450938	3	4	533	1	0	0	0	0	1	0	0	0	15986	652	23	1	583	1	TIAM2	6	155450938	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	1036406	155450938	15664129	19	47309										
INTS1	0	genome.wustl.edu	37	chr7	1527532	1527532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ctgggcggtctgcagctcacGgttcagcatctccgtccggg	14	14	4	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	1527532	1527532	G	A	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.2764	p.R922C	0.996	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	22	0	0	14	8	34.78	-	-	-	A	1527532	G	A	1527532	3	1	533	1	0	0	0	0	1	0	0	0	7829	1116	39	1	4312	1	INTS1	7	1527532	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		1527532	157611131	20	47310										
TSPAN13	0	genome.wustl.edu	37	chr7	16816717	16816717	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	gttcagttttctgtatcttgCgcttgtttagccctgaacca	8	10	3	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	16816717	16816717	C	T	SNP	TSPAN13	ENST00000262067	human	ensembl	69_37n	1	known	silent	c.282	p.C94	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN13	HGNC	ENSG00000106537	225	0	0	179	30	14.35	-	-	-	T	16816717	C	T	16816717	2	4	533	1	0	0	0	0	0	0	0	1	16733	776	27	1		1	TSPAN13	7	16816717	Silent	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	15289185	16816717	142321946	21	47311										
LANCL2	0	genome.wustl.edu	37	chr7	55492947	55492947	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tttgtttttaatttgcccagGtctttaaggaggagaagtac	10	5	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	55492947	55492947	G	T	SNP	LANCL2	ENST00000254770	human	ensembl	69_37n	1	known	missense	c.1009	p.V337F	0.562	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434	147	0	0	131	29	18.12	-	-	-	T	55492947	G	T	55492947	3	4	533	1	0	0	0	0	1	0	0	0	8675	1275	44	4	1035	4	LANCL2	7	55492947	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	38676230	55492947	103645716	22	47312										
SLCO5A1	0	genome.wustl.edu	37	chr8	70585447	70585447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ccaaaccaaaatacacaaaaCgaaacgacgtcacgttgtac	5	12	1	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	8	70585447	70585447	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.2204	p.R735H	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	104	0	0	102	26	20.31	-	-	-	T	70585447	C	T	70585447	3	4	533	1	0	0	0	0	1	0	0	0	14820	536	19	1	346	1	SLCO5A1	8	70585447	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		70585447	75778575	23	47313										
LRP12	0	genome.wustl.edu	37	chr8	105503549	105503552	+	Frame_Shift_Del	DEL	GTGA	GTGA	-													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tccacggaaaacaaacttctGtgagtatgatttctctcagg							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	8	105503549	105503552	GTGA	-	DEL	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	frame_shift_del	c.1875_1872	p.H625fs	1.000:1.000:1.000:0.954	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	125	0	0	96	26	21.31	-	-	-	-	105503552	GTGA	-	105503549	7	5	533	1	0	1	0	1	0	0	0	0	9020	1368	48	0	651	0	LRP12	8	105503549	Frame_Shift_Del	DEL	GTGA	TCGA-BH-A0E6-01A-11W-A050-09	34918102	105503549	40860473	24	47314										
FAM83H	0	genome.wustl.edu	37	chr8	144812359	144812360	+	Frame_Shift_Ins	INS	-	-	G													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tccttgatactggggctgtcINSggggggcggtggctgcacca							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	8	144812359	144812360	-	G	INS	FAM83H	ENST00000388913	human	ensembl	69_37n	-1	known	frame_shift_ins	c.394_393	p.D131fs	1.000:0.007	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921	19	0	0	18	3	14.29	-	-	-	G	144812360	-	G	144812359	7	5	533	1	0	1	1	0	0	0	0	0	5685	884	31	0	3161	0	FAM83H	8	144812359	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09	39308810	144812359	1551663	25	47315										
PRPF4	0	genome.wustl.edu	37	chr9	116038854	116038854	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	aaaactaaagcacccgacgaCttagttgctccggtcgtgaa	9	11	0	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	9	116038854	116038854	C	T	SNP	PRPF4	ENST00000374198	human	ensembl	69_37n	1	known	silent	c.57	p.D19	0.926	NULL	pfam_WD40_repeat,pfam_PRP4,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875	264	0	0	140	46	24.73	-	-	-	T	116038854	C	T	116038854	2	4	533	1	0	0	0	0	0	0	0	1	12651	564	20	4		4	PRPF4	9	116038854	Silent	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		116038854	25174577	26	47316										
SVIL	0	genome.wustl.edu	37	chr10	29756715	29756715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tcctgtctctccttcctaagGcatcccagaatccgagtggc	8	15	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	29756715	29756715	G	A	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.5933	p.A1978V	1.000	smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	116	0	0	172	28	13.93	-	-	-	A	29756715	G	A	29756715	3	1	533	1	0	0	0	0	1	0	0	0	15512	1203	42	4	735	4	SVIL	10	29756715	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		29756715	105778032	27	47317										
LRIT2	0	genome.wustl.edu	37	chr10	85984158	85984158	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tgaggggctggcctgtgccaAgcatcgcagggtcacattct	14	11	2	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	85984158	85984158	A	T	SNP	LRIT2	ENST00000538192	human	ensembl	69_37n	-1	known	missense	c.823	p.L275M	0.982	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT2	HGNC	ENSG00000204033	64	0	0	83	11	11.7	-	-	-	T	85984158	A	T	85984158	3	4	533	1	0	0	0	0	1	0	0	0	9014	69	3	5	837	5	LRIT2	10	85984158	Missense_Mutation	SNP	A	TCGA-BH-A0E6-01A-11W-A050-09	56227443	85984158	49550589	28	47318										
POLL	0	genome.wustl.edu	37	chr10	103339232	103339232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	accagtcccgctcagcaggtTctcggtaggggaggcctaag	14	12	2	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	103339232	103339232	T	C	SNP	POLL	ENST00000299206	human	ensembl	69_37n	-1	known	missense	c.1706	p.E569G	1.000	smart_DNA-dir_DNA_pol_X,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLL	HGNC	ENSG00000166169	44	0	0	31	7	18.42	-	-	-	C	103339232	T	C	103339232	3	2	533	1	0	0	0	0	1	0	0	0	12279	1783	62	5	25	5	POLL	10	103339232	Missense_Mutation	SNP	T	TCGA-BH-A0E6-01A-11W-A050-09	17355074	103339232	32195515	29	47319										
API5	0	genome.wustl.edu	37	chr11	43364082	43364082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	taagacatcagcattcttcaGcattgtcatgagcttaatat	6	8	4	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	43364082	43364082	G	A	SNP	API5	ENST00000534695	human	ensembl	69_37n	1	putative	missense	c.251	p.S84N	0.992	NULL	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	295	0	0	329	40	10.84	-	-	-	A	43364082	G	A	43364082	3	1	533	1	0	0	0	0	1	0	0	0	774	986	34	4		4	API5	11	43364082	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		43364082	91642434	30	47320										
RASGRP2	0	genome.wustl.edu	37	chr11	64508387	64508388	+	Frame_Shift_Ins	INS	-	-	C													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	atggtataggatactgagtgINScccccccagccctctgtgct							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	64508387	64508388	-	C	INS	RASGRP2	ENST00000377486	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.404_403	p.A135fs	0.000:0.001	NULL	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	30	0	0	22	4	15.38	-	-	-	C	64508388	-	C	64508387	7	5	533	1	0	1	1	0	0	0	0	0	13158	1334	46	0		0	RASGRP2	11	64508387	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09	21144305	64508387	70498129	31	47321										
RELA	0	genome.wustl.edu	37	chr11	65427261	65427261	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tagtccccacgctgctcttcTataggaactgccaagaaaac	7	13	2	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	65427261	65427261	T	C	SNP	RELA	ENST00000308639	human	ensembl	69_37n	-1	known	splice_site	c.428-2	e6-2	0.911	-	-	-	no_errors	RELA	HGNC	ENSG00000173039	42	0	0	31	5	13.89	-	-	-	C	65427261	T	C	65427261	5	2	533	1	0	0	0	0	0	0	1	0	13299	1536	53	5	1244	5	RELA	11	65427261	Splice_Site	SNP	T	TCGA-BH-A0E6-01A-11W-A050-09	918874	65427261	69579255	32	47322										
ADRBK1	0	genome.wustl.edu	37	chr11	67051331	67051331	+	Frame_Shift_Del	DEL	C	C	-													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ctgttctgctgcagtaccctCccccgctgatccccccacga							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	67051331	67051331	C	-	DEL	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	frame_shift_del	c.1402	p.P469fs	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	16	0	0	13	5	26.32	-	-	-	-	67051331	C	-	67051331	7	5	533	1	0	1	0	1	0	0	0	0	343	855	30	0	1468	0	ADRBK1	11	67051331	Frame_Shift_Del	DEL	C	TCGA-BH-A0E6-01A-11W-A050-09	1624070	67051331	67955185	33	47323										
NOX4	0	genome.wustl.edu	37	chr11	89166019	89166019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	catgcagacccctgtcaggcCaggaactataaaaatgtata	8	10	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	89166019	89166019	C	T	SNP	NOX4	ENST00000413594	human	ensembl	69_37n	-1	known	missense	c.544	p.G182S	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	230	0	0	299	50	14.33	-	-	-	T	89166019	C	T	89166019	3	4	533	1	0	0	0	0	1	0	0	0	10630	594	21	4	1303	4	NOX4	11	89166019	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	22114688	89166019	45840497	34	47324										
KIAA1377	0	genome.wustl.edu	37	chr11	101833078	101833078	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	tggctacatttccagaccaaGagaaatattctgaattaaat	6	7	1	3			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	101833078	101833078	G	A	SNP	KIAA1377	ENST00000263468	human	ensembl	69_37n	1	known	missense	c.1312	p.E438K	0.144	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318	82	0	0	111	15	11.9	-	-	-	A	101833078	G	A	101833078	3	1	533	1	0	0	0	0	1	0	0	0	8279	943	33	2	1334	2	KIAA1377	11	101833078	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	12667059	101833078	33173438	35	47325										
DRD2	0	genome.wustl.edu	37	chr11	113286299	113286299	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	acgatggaggagtagaccacGaaggccgggttggcaatgat	16	7	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	113286299	113286299	G	A	SNP	DRD2	ENST00000355319	human	ensembl	69_37n	-1	known	silent	c.567	p.F189	0.903	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	502	0	0	608	92	13.11	-	-	-	A	113286299	G	A	113286299	2	1	533	1	0	0	0	0	0	0	0	1	4792	1049	37	1		1	DRD2	11	113286299	Silent	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	11453221	113286299	21720217	36	47326										
SLC6A12	0	genome.wustl.edu	37	chr12	306621	306621	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ggagaagacaacaaacccagCcacaaagctggtggcactgt	11	11	0	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	306621	306621	C	A	SNP	SLC6A12	ENST00000359674	human	ensembl	69_37n	-1	known	missense	c.997	p.A333S	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_betaine	-	no_errors	SLC6A12	HGNC	ENSG00000111181	86	0	0	53	9	14.52	-	-	-	A	306621	C	A	306621	3	1	533	1	0	0	0	0	1	0	0	0	14764	739	26	4	875	4	SLC6A12	12	306621	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		306621	133545274	37	47327										
ADCY6	0	genome.wustl.edu	37	chr12	49176644	49176644	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	acacaccaccatgagccccaCgaacagggcggcggcacagg	12	16	0	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	49176644	49176644	C	G	SNP	ADCY6	ENST00000307885	human	ensembl	69_37n	-1	known	missense	c.574	p.V192L	0.188	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233	43	0	0	31	10	24.39	-	-	-	G	49176644	C	G	49176644	3	3	533	1	0	0	0	0	1	0	0	0	298	536	19	3	3016	3	ADCY6	12	49176644	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	48870023	49176644	84675251	38	47328										
NCOR2	0	genome.wustl.edu	37	chr12	124846815	124846816	+	Frame_Shift_Ins	INS	-	-	G													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ggtgggagctgcgtcctcccINSgggggggctcatggactttg							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	124846815	124846816	-	G	INS	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2954_2953	p.R985fs	0.999:0.990	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	17	0	0	11	3	21.43	-	-	-	G	124846816	-	G	124846815	7	5	533	1	0	1	1	0	0	0	0	0	10308	652	23	0	4715	0	NCOR2	12	124846815	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09	75670171	124846815	9005080	39	47329										
NHLRC3	0	genome.wustl.edu	37	chr13	39612843	39612843	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	catttttggttttgcattcgCgtttttgtggctctccagtg	10	8	1	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	13	39612843	39612843	C	G	SNP	NHLRC3	ENST00000379600	human	ensembl	69_37n	1	known	missense	c.67	p.R23G	0.002	NULL	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC3	HGNC	ENSG00000188811	172	0	0	91	14	13.21	-	-	-	G	39612843	C	G	39612843	3	3	533	1	0	0	0	0	1	0	0	0	10479	768	27	3	69	3	NHLRC3	13	39612843	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		39612843	75557035	40	47330										
RASA3	0	genome.wustl.edu	37	chr13	114806570	114806570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ccttctggatggccaccttcCctgcaacacaagcagagaag	9	14	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	13	114806570	114806570	C	G	SNP	RASA3	ENST00000334062	human	ensembl	69_37n	-1	known	missense	c.278	p.G93A	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,prints_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASA3	HGNC	ENSG00000185989	23	0	0	18	11	37.93	-	-	-	G	114806570	C	G	114806570	3	3	533	1	0	0	0	0	1	0	0	0	13145	637	22	4	2310	4	RASA3	13	114806570	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	75193727	114806570	363308	41	47331										
NEK9	0	genome.wustl.edu	37	chr14	75580953	75580953	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	gatcaattccaaagagtactGgctagagtcaacttccatgg	9	9	2	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	14	75580953	75580953	G	A	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	nonsense	c.826	p.Q276*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	190	0	0	223	42	15.85	-	-	-	A	75580953	G	A	75580953	4	1	533	1	0	0	0	0	0	1	0	0	10403	1357	47	4	2177	4	NEK9	14	75580953	Nonsense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		75580953	31768587	42	47332										
WDR76	0	genome.wustl.edu	37	chr15	44149283	44149283	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	aacttcttatgagaaacttaCcagttcttctatgggaaaaa	6	7	3	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	15	44149283	44149283	C	A	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	missense	c.1331	p.T444N	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	148	0	0	139	29	17.26	-	-	-	A	44149283	C	A	44149283	3	1	533	1	0	0	0	0	1	0	0	0	17423	507	18	4	1369	4	WDR76	15	44149283	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09		44149283	58382109	43	47333										
SLC16A11	0	genome.wustl.edu	37	chr17	6946356	6946357	+	Frame_Shift_Ins	INS	-	-	C													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	aaccatcaccacggggcgggINSccccccagcgcgtgctcagg							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	6946356	6946357	-	C	INS	SLC16A11	ENST00000308009	human	ensembl	69_37n	-1	known	frame_shift_ins	c.311_310	p.A104fs	1.000:0.993	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326	34	0	0	13	3	18.75	-	-	-	C	6946357	-	C	6946356	7	5	533	1	0	1	1	0	0	0	0	0	14493	1203	42	0	1116	0	SLC16A11	17	6946356	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09		6946356	74248854	44	47334										
TP53	0	genome.wustl.edu	37	chr17	7577566	7577567	+	Frame_Shift_Ins	INS	-	-	A													0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ccgcccatgcaggaactgttINSacacatgtagttgtagtgga							TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	7577566	7577567	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.715_714	p.N238fs	1.000:0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	195	0	0	156	80	33.9	-	-	-	A	7577567	-	A	7577566	7	5	533	1	0	1	1	0	0	0	0	0	16477	1754	61	0	575	0	TP53	17	7577566	Frame_Shift_Ins	INS	-	TCGA-BH-A0E6-01A-11W-A050-09	631210	7577566	73617644	45	47335										
TMEM101	0	genome.wustl.edu	37	chr17	42092199	42092199	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ctcaccggcgtgcctcagccCtctcagcgtacagcatgagc	10	17	3	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	42092199	42092199	C	T	SNP	TMEM101	ENST00000206380	human	ensembl	69_37n	-1	known	missense	c.122	p.R41K	1.000	NULL	NULL	-	no_errors	TMEM101	HGNC	ENSG00000091947	25	0	0	24	12	33.33	-	-	-	T	42092199	C	T	42092199	3	4	533	1	0	0	0	0	1	0	0	0	16111	681	24	4	667	4	TMEM101	17	42092199	Missense_Mutation	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	34514633	42092199	39103011	46	47336										
ABCA9	0	genome.wustl.edu	37	chr17	66981200	66981200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	agccctgcccgtacctttcgCtttattccctctgacaaggt	7	15	1	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	66981200	66981200	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	silent	c.4278	p.K1426	0.991	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	604	0	0	436	135	23.64	-	-	-	T	66981200	C	T	66981200	2	4	533	1	0	0	0	0	0	0	0	1	39	796	28	4		4	ABCA9	17	66981200	Silent	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	24889001	66981200	14214010	47	47337										
VAPA	0	genome.wustl.edu	37	chr18	9931897	9931897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	agtgaagactacagcacctcGccggtactgtgtgaggccca	12	12	0	3			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	18	9931897	9931897	G	C	SNP	VAPA	ENST00000340541	human	ensembl	69_37n	1	known	missense	c.170	p.R57P	1.000	pfam_Major_sperm,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_Major_sperm	pfam_Major_sperm,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_Major_sperm	-	no_errors	VAPA	HGNC	ENSG00000101558	143	0	0	151	31	17.03	-	-	-	C	9931897	G	C	9931897	3	2	533	1	0	0	0	0	1	0	0	0	17218	1087	38	3	176	3	VAPA	18	9931897	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		9931897	68145351	48	47338										
TIMM44	0	genome.wustl.edu	37	chr19	8006002	8006002	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	ctcaccagtggcagctctccGcccggccggcgcatctgata	11	17	3	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	8006002	8006002	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	silent	c.126	p.G42	0.000	pirsf_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	76	0	0	77	14	14.58	-	-	-	A	8006002	G	A	8006002	2	1	533	1	0	0	0	0	0	0	0	1	16007	1074	38	1		1	TIMM44	19	8006002	Silent	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		8006002	51122981	49	47339										
MYO1F	0	genome.wustl.edu	37	chr19	8592341	8592341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	atcacatacacacacttgggCgtcaggatcaagtcccgctt	8	13	3	0			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	8592341	8592341	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	silent	c.2355	p.T785	0.554	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	84	0	0	125	17	11.89	-	-	-	T	8592341	C	T	8592341	2	4	533	1	0	0	0	0	0	0	0	1	10145	755	27	1		1	MYO1F	19	8592341	Silent	SNP	C	TCGA-BH-A0E6-01A-11W-A050-09	586339	8592341	50536642	50	47340										
RPS5	0	genome.wustl.edu	37	chr19	58904744	58904744	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	agaaccctctgcaggtcctgGtgaacgccatcatcaacagt	9	13	3	2			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	58904744	58904744	G	C	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.337	p.V113L	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	35	0	0	35	9	20.45	-	-	-	C	58904744	G	C	58904744	3	2	533	1	0	0	0	0	1	0	0	0	13734	1261	44	4	347	4	RPS5	19	58904744	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09	50312403	58904744	224239	51	47341										
ZBED1	0	genome.wustl.edu	37	chrX	2406918	2406918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.246831955922865	0	0.339393939393939	1	1	0	gagacgctcaggggcgacgcGcgtggccgtcacgcaccagt	16	14	2	1			TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	X	2406918	2406918	G	A	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	missense	c.1843	p.R615C	0.806	pfam_HATC,superfamily_RNaseH-like_dom	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	97	0	0	38	37	48.68	-	-	-	A	2406918	G	A	2406918	3	1	533	1	0	0	0	0	1	0	0	0	17614	1087	38	1	245	1	ZBED1	23	2406918	Missense_Mutation	SNP	G	TCGA-BH-A0E6-01A-11W-A050-09		2406918	152863642	52	47342										
ARID1A	0	genome.wustl.edu	37	chr1	27099478	27099478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cttatggcagcatgaggaaaGgtgactgatctgattgctat	12	6	1	4			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	27099478	27099478	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.3715	p.A1239T	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	338	0	0	222	121	35.28	-	-	-	A	27099478	G	A	27099478	3	1	534	1	0	0	0	0	1	0	0	0	915	1014	35	4	3769	4	ARID1A	1	27099478	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09		27099478	222151143	1	47343										
MTF1	0	genome.wustl.edu	37	chr1	38289483	38289483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tgctgaggtcctggccctggGtctgatggagagagacaaag	16	8	1	4			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	38289483	38289483	G	A	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.1070	p.T357I	0.073	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	130	0	0	95	52	35.37	-	-	-	A	38289483	G	A	38289483	3	1	534	1	0	0	0	0	1	0	0	0	9994	1275	44	4	1207	4	MTF1	1	38289483	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	11190005	38289483	210961138	2	47344										
KIRREL	0	genome.wustl.edu	37	chr1	158061187	158061187	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	acttcttggaggtggggaccCtggaacgctatacagtggag	15	8	1	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	158061187	158061187	C	A	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.1360	p.L454M	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	102	0	0	88	41	31.78	-	-	-	A	158061187	C	A	158061187	3	1	534	1	0	0	0	0	1	0	0	0	8377	680	24	4	1354	4	KIRREL	1	158061187	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09	119771704	158061187	91189434	3	47345										
DYSF	0	genome.wustl.edu	37	chr2	71744138	71744138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ggtggtagactctcgttctcTcaggacagatgctctcctcg	11	12	4	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	71744138	71744138	T	C	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.968	p.L323P	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	264	0	0	156	99	38.82	-	-	-	C	71744138	T	C	71744138	3	2	534	1	0	0	0	0	1	0	0	0	4894	1551	54	5	1101	5	DYSF	2	71744138	Missense_Mutation	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09		71744138	171455235	4	47346										
UXS1	0	genome.wustl.edu	37	chr2	106761718	106761718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	atgtccgatccagtgctccaCgtttctcttcctgcccgtga	8	15	1	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	106761718	106761718	C	T	SNP	UXS1	ENST00000283148	human	ensembl	69_37n	-1	known	missense	c.400	p.V134M	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_3Beta_OHSteriod_DH/Estase	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	112	0	0	77	35	31.25	-	-	-	T	106761718	C	T	106761718	3	4	534	1	0	0	0	0	1	0	0	0	17206	536	19	1	917	1	UXS1	2	106761718	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09	35017580	106761718	136437655	5	47347										
CYP20A1	0	genome.wustl.edu	37	chr2	204137424	204137424	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gattggaaaaggctttctagAtgggtcacttgataaaaaca	10	5	2	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	204137424	204137424	A	G	SNP	CYP20A1	ENST00000356079	human	ensembl	69_37n	1	known	missense	c.632	p.D211G	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004	33	0	0	23	13	36.11	-	-	-	G	204137424	A	G	204137424	3	3	534	1	0	0	0	0	1	0	0	0	4183	333	12	5	654	5	CYP20A1	2	204137424	Missense_Mutation	SNP	A	TCGA-BH-A0E7-01A-11W-A050-09	97375706	204137424	39061949	6	47348										
CCDC108	0	genome.wustl.edu	37	chr2	219888747	219888748	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gcctcctaccttgagatactINSggggggaagcattgcactgc							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	219888747	219888748	-	G	INS	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2585_2584	p.Q862fs	0.093:0.055	superfamily_PapD-like	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	28	0	0	24	3	11.11	-	-	-	G	219888748	-	G	219888747	7	5	534	1	0	1	1	0	0	0	0	0	2768	1580	55	0	3276	0	CCDC108	2	219888747	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09	15751323	219888747	23310626	7	47349										
IRS1	0	genome.wustl.edu	37	chr2	227661663	227661664	+	Frame_Shift_Ins	INS	-	-	C													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gagctgtctgggcggtggtgINSccccccccgacgctccaagg							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	227661663	227661664	-	C	INS	IRS1	ENST00000305123	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1792_1791	p.H597fs	1.000:0.995	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	12	0	0	6	3	33.33	-	-	-	C	227661664	-	C	227661663	7	5	534	1	0	1	1	0	0	0	0	0	7894	1319	46	0	1940	0	IRS1	2	227661663	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09	7772916	227661663	15537710	8	47350										
CISH	0	genome.wustl.edu	37	chr3	50645371	50645371	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tccggaaaggccaggatgcgTggcctggacaagcagttgga	16	9	0	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	3	50645371	50645371	T	C	SNP	CISH	ENST00000443053	human	ensembl	69_37n	-1	known	silent	c.495	p.P165	0.053	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	19	0	0	11	5	31.25	-	-	-	C	50645371	T	C	50645371	2	2	534	1	0	0	0	0	0	0	0	1	3467	1683	59	5		5	CISH	3	50645371	Silent	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09		50645371	147377059	9	47351										
EPHB1	0	genome.wustl.edu	37	chr3	134880927	134880927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	agcaaggattgatgggctgcGgcctggcatggtatatgtgg	17	6	0	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	3	134880927	134880927	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.1490	p.R497Q	0.998	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	184	0	0	106	61	36.53	-	-	-	A	134880927	G	A	134880927	3	1	534	1	0	0	0	0	1	0	0	0	5211	1116	39	1	1516	1	EPHB1	3	134880927	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	84235556	134880927	63141503	10	47352										
TLR2	0	genome.wustl.edu	37	chr4	154624747	154624747	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ccgtggaatgtttggaactgCgagatactgatttggacact	12	7	0	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	4	154624747	154624747	C	T	SNP	TLR2	ENST00000260010	human	ensembl	69_37n	1	known	nonsense	c.688	p.R230*	0.683	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	93	0	0	56	18	24.32	-	-	-	T	154624747	C	T	154624747	4	4	534	1	0	0	0	0	0	1	0	0	16046	760	27	1	690	1	TLR2	4	154624747	Nonsense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09		154624747	36529529	11	47353										
ZNF131	0	genome.wustl.edu	37	chr5	43174806	43174806	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gttgggaaggtgcatgtgctAccattgcttcaggttcaggt	14	7	2	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	5	43174806	43174806	A	G	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	1	known	silent	c.1443	p.L481	0.477	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	43	0	0	22	16	42.11	-	-	-	G	43174806	A	G	43174806	2	3	534	1	0	0	0	0	0	0	0	1	17817	378	14	5		5	ZNF131	5	43174806	Silent	SNP	A	TCGA-BH-A0E7-01A-11W-A050-09		43174806	137740454	12	47354										
MAP3K1	0	genome.wustl.edu	37	chr5	56155572	56155572	+	Frame_Shift_Del	DEL	G	G	-													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	caatcccagttaaaggagatGgatctgaaatgaatcactta							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	5	56155572	56155572	G	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.664	p.G222fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	91	0	0	27	20	42.55	-	-	-	-	56155572	G	-	56155572	7	5	534	1	0	1	0	1	0	0	0	0	9314	1349	47	0	674	0	MAP3K1	5	56155572	Frame_Shift_Del	DEL	G	TCGA-BH-A0E7-01A-11W-A050-09	12980766	56155572	124759688	13	47355										
SLC35B2	0	genome.wustl.edu	37	chr6	44223035	44223035	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ctgtcaggtactcccagtgtTcgtagctgcgccgagacaca	11	13	1	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	6	44223035	44223035	T	G	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.707	p.E236A	1.000	pfam_UAA	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	137	0	0	51	57	52.78	-	-	-	G	44223035	T	G	44223035	3	3	534	1	0	0	0	0	1	0	0	0	14665	1783	62	5	595	5	SLC35B2	6	44223035	Missense_Mutation	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09		44223035	126892032	14	47356										
MYB	0	genome.wustl.edu	37	chr6	135521223	135521223	+	Frame_Shift_Del	DEL	T	T	-													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tgcttgttttctttttaaagTtttagaaccccagctatcaa							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	6	135521223	135521223	T	-	DEL	MYB	ENST00000341911	human	ensembl	69_37n	1	known	frame_shift_del	c.1710	p.F571fs	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	52	0	0	23	10	30.3	-	-	-	-	135521223	T	-	135521223	7	5	534	1	0	1	0	1	0	0	0	0	10079	1739	60	0	1756	0	MYB	6	135521223	Frame_Shift_Del	DEL	T	TCGA-BH-A0E7-01A-11W-A050-09	91298188	135521223	35593844	15	47357										
CD36	0	genome.wustl.edu	37	chr7	80285857	80285857	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cttattttctttttcatagcAagttgtcctcgaagaaggta	7	7	2	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	7	80285857	80285857	A	T	SNP	CD36	ENST00000309881	human	ensembl	69_37n	1	known	missense	c.122	p.Q41L	1.000	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	230	0	0	79	45	36	-	-	-	T	80285857	A	T	80285857	3	4	534	1	0	0	0	0	1	0	0	0	3036	144	5	5	128	5	CD36	7	80285857	Missense_Mutation	SNP	A	TCGA-BH-A0E7-01A-11W-A050-09		80285857	78852806	16	47358										
MTMR9	0	genome.wustl.edu	37	chr8	11180161	11180162	+	Frame_Shift_Ins	INS	-	-	TT													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ctacgttggaatagatcctcINStaagtatttggatgaagcat							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	8	11180161	11180162	-	TT	INS	MTMR9	ENST00000221086	human	ensembl	69_37n	1	known	frame_shift_ins	c.1514_1515	p.K506fs	1.000:0.993	NULL	pfam_Myotub-related	-	no_errors	MTMR9	HGNC	ENSG00000104643	69	0	0	6	23	79.31	-	-	-	TT	11180162	-	TT	11180161	7	5	534	1	0	1	1	0	0	0	0	0	10022	913	32	0	1552	0	MTMR9	8	11180161	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09		11180161	135183861	17	47359										
COL22A1	0	genome.wustl.edu	37	chr8	139890151	139890151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	caaagatgcggatgccagcgCggtgggctgccgccgcggcg	18	13	0	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	8	139890151	139890151	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	59	0	0	37	14	27.45	-	-	-	T	139890151	C	T	139890151	3	4	534	1	0	0	0	0	1	0	0	0	3711	768	27	1	4632	1	COL22A1	8	139890151	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09	128709990	139890151	6473871	18	47360										
TMOD1	0	genome.wustl.edu	37	chr9	100308545	100308545	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gcccctttaaaagagaggagCtcttggatcacttggaaaag	11	8	2	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	9	100308545	100308545	C	A	SNP	TMOD1	ENST00000259365	human	ensembl	69_37n	1	known	missense	c.199	p.L67I	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD1	HGNC	ENSG00000136842	113	0	0	84	37	30.58	-	-	-	A	100308545	C	A	100308545	3	1	534	1	0	0	0	0	1	0	0	0	16328	797	28	4	205	4	TMOD1	9	100308545	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09		100308545	40904886	19	47361										
PRF1	0	genome.wustl.edu	37	chr10	72358324	72358324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gtctcgggggctcttctgccGccctggtgggcacggccggc	17	15	3	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	72358324	72358324	G	A	SNP	PRF1	ENST00000318971	human	ensembl	69_37n	-1	known	missense	c.1153	p.R385W	0.039	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_MACPF,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_MACPF,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	PRF1	HGNC	ENSG00000180644	30	0	0	10	7	38.89	-	-	-	A	72358324	G	A	72358324	3	1	534	1	0	0	0	0	1	0	0	0	12559	1086	38	1	518	1	PRF1	10	72358324	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09		72358324	63176423	20	47362										
FAM22A	0	genome.wustl.edu	37	chr10	88988115	88988115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ccacacccgctcccggcccaGcacacgggccgctccttgtg	10	21	0	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	88988115	88988115	G	A	SNP	FAM22A	ENST00000381707	human	ensembl	69_37n	1	known	missense	c.478	p.A160T	0.003	NULL	NULL	-	no_errors	FAM22A	HGNC	ENSG00000184923	18	0	0	19	7	26.92	-	-	-	A	88988115	G	A	88988115	3	1	534	1	0	0	0	0	1	0	0	0	5585	971	34	4	484	4	FAM22A	10	88988115	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	16629791	88988115	46546632	21	47363										
PAX2	0	genome.wustl.edu	37	chr10	102509528	102509529	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	acgggggtgtgaaccagctcINSgggggggtgtttgtgaacgg							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	102509528	102509529	-	G	INS	PAX2	ENST00000370296	human	ensembl	69_37n	1	known	frame_shift_ins	c.69_70	p.V25fs	1.000:1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891	28	0	0	22	3	12	-	-	-	G	102509529	-	G	102509528	7	5	534	1	0	1	1	0	0	0	0	0	11552	871	31	0	75	0	PAX2	10	102509528	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09	13521413	102509528	33025219	22	47364										
ADAM12	0	genome.wustl.edu	37	chr10	127708377	127708377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ggcagaggcttctgagggggGtttggcttacaggtcccctg	17	9	1	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	127708377	127708377	G	T	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.2556	p.N852K	0.505	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	106	0	0	53	35	39.77	-	-	-	T	127708377	G	T	127708377	3	4	534	1	0	0	0	0	1	0	0	0	236	1252	44	4	181	4	ADAM12	10	127708377	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	25198849	127708377	7826370	23	47365										
SLC22A11	0	genome.wustl.edu	37	chr11	64323714	64323714	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ccgccaggccccaaccagggGccccaccagtgccgccgctt	11	21	0	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	64323714	64323714	G	T	SNP	SLC22A11	ENST00000301891	human	ensembl	69_37n	1	known	silent	c.243	p.G81	0.011	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	28	0	0	17	13	39.39	-	-	-	T	64323714	G	T	64323714	2	4	534	1	0	0	0	0	0	0	0	1	14531	1190	42	4		4	SLC22A11	11	64323714	Silent	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09		64323714	70682802	24	47366										
DPF2	0	genome.wustl.edu	37	chr11	65116380	65116380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cacatgtactgtctcaccccGtccatgtctgagccccctga	7	17	2	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	65116380	65116380	G	A	SNP	DPF2	ENST00000528416	human	ensembl	69_37n	1	known	silent	c.1077	p.P359	0.489	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884	174	1	0.57	152	74	32.74	-	-	-	A	65116380	G	A	65116380	2	1	534	1	0	0	0	0	0	0	0	1	4752	1132	40	1		1	DPF2	11	65116380	Silent	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	792666	65116380	69890136	25	47367										
SCYL1	0	genome.wustl.edu	37	chr11	65305349	65305349	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gccaagtgagccgtgctagtCaggtgagctgggtctggtgg	18	8	2	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	65305349	65305349	C	T	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	nonsense	c.2029	p.Q677*	0.067	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	364	0	0	168	101	37.55	-	-	-	T	65305349	C	T	65305349	4	4	534	1	0	0	0	0	0	1	0	0	14035	827	29	2	2087	2	SCYL1	11	65305349	Nonsense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09	188969	65305349	69701167	26	47368										
XPOT	0	genome.wustl.edu	37	chr12	64818467	64818467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	agtttcaccagagttactacTggcctctgttcgcagagttt	9	10	2	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	12	64818467	64818467	T	C	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	missense	c.1271	p.L424P	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	166	0	0	93	36	27.91	-	-	-	C	64818467	T	C	64818467	3	2	534	1	0	0	0	0	1	0	0	0	17547	1580	55	5	1313	5	XPOT	12	64818467	Missense_Mutation	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09		64818467	69033428	27	47369										
TBX3	0	genome.wustl.edu	37	chr12	115109800	115109800	+	Frame_Shift_Del	DEL	T	T	-													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	agagcgtggaggagcggctgTtgagttcagagcccgagtcc							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	12	115109800	115109800	T	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.2078	p.N693fs	1.000	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	44	0	0	18	12	36.36	-	-	-	-	115109800	T	-	115109800	7	5	534	1	0	1	0	1	0	0	0	0	15754	1725	60	0	157	0	TBX3	12	115109800	Frame_Shift_Del	DEL	T	TCGA-BH-A0E7-01A-11W-A050-09	50291333	115109800	18742095	28	47370										
TRPC4	0	genome.wustl.edu	37	chr13	38237581	38237581	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tgcattattctgcttttcacAtcttatgcctttgcaggtta	6	9	3	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	13	38237581	38237581	A	T	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.1660	p.C554S	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	203	0	0	79	54	40.6	-	-	-	T	38237581	A	T	38237581	3	4	534	1	0	0	0	0	1	0	0	0	16676	217	8	5	1312	5	TRPC4	13	38237581	Missense_Mutation	SNP	A	TCGA-BH-A0E7-01A-11W-A050-09		38237581	76932297	29	47371										
C14orf39	0	genome.wustl.edu	37	chr14	60938273	60938273	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	aacaaaaatattaatacctcGaaatttcataaaaattgttt	2	5	1	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	14	60938273	60938273	G	A	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	nonsense	c.508	p.R170*	0.993	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	119	0	0	49	33	40.24	-	-	-	A	60938273	G	A	60938273	4	1	534	1	0	0	0	0	0	1	0	0	1784	1066	37	1	1307	1	C14orf39	14	60938273	Nonsense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09		60938273	46411267	30	47372										
TRIP11	0	genome.wustl.edu	37	chr14	92436128	92436128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ggtttcagaagaagatgcccGggcccaccaggtccaagtcc	12	13	1	3			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	14	92436128	92436128	G	A	SNP	TRIP11	ENST00000554357	human	ensembl	69_37n	-1	novel	missense	c.4975	p.R1659W	0.940	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIP11	HGNC	ENSG00000100815	174	0	0	129	39	23.21	-	-	-	A	92436128	G	A	92436128	3	1	534	1	0	0	0	0	1	0	0	0	16651	1103	39	1	114	1	TRIP11	14	92436128	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	31497855	92436128	14913412	31	47373										
CHRNA7	0	genome.wustl.edu	37	chr15	32460485	32460485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gaggtccgctacattgccaaCcgcttccgctgccaggacga	11	15	0	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	15	32460485	32460485	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	1	known	silent	c.1422	p.N474	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	14	0	0	5	4	44.44	-	-	-	T	32460485	C	T	32460485	2	4	534	1	0	0	0	0	0	0	0	1	3417	506	18	4		4	CHRNA7	15	32460485	Silent	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09		32460485	70070907	32	47374										
LYSMD4	0	genome.wustl.edu	37	chr15	100271565	100271565	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cgagaaaagcaagcataccaTagaaatccggaattaaattc	7	8	0	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	15	100271565	100271565	T	C	SNP	LYSMD4	ENST00000344791	human	ensembl	69_37n	-1	known	missense	c.257	p.Y86C	0.023	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060	93	0	0	34	28	45.16	-	-	-	C	100271565	T	C	100271565	3	2	534	1	0	0	0	0	1	0	0	0	9194	1406	49	5	648	5	LYSMD4	15	100271565	Missense_Mutation	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09	67811080	100271565	2259827	33	47375										
EEF2K	0	genome.wustl.edu	37	chr16	22237102	22237103	+	Frame_Shift_Ins	INS	-	-	C													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	aggcgttgatggcggccagtINSccccccgagctggccatgat							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	16	22237102	22237103	-	C	INS	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	frame_shift_ins	c.52_53	p.R20fs	0.000:0.001	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	46	0	0	85	14	14.14	-	-	-	C	22237103	-	C	22237102	7	5	534	1	0	1	1	0	0	0	0	0	4965	1667	58	0	54	0	EEF2K	16	22237102	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09		22237102	68117651	34	47376										
CDC27	0	genome.wustl.edu	37	chr17	45219239	45219239	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ttgcatgtactctgaaagttCaaaataggcccttccaattt	6	9	2	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	17	45219239	45219239	C	T	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	missense	c.1549	p.E517K	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	34	0	0	26	15	36.59	-	-	-	T	45219239	C	T	45219239	3	4	534	1	0	0	0	0	1	0	0	0	3095	835	29	2	975	2	CDC27	17	45219239	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09		45219239	35975971	35	47377										
CBX2	0	genome.wustl.edu	37	chr17	77758219	77758220	+	Frame_Shift_Ins	INS	-	-	C													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	aaagtggggaacacagggggINSccccccgcacacccatggtg							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	17	77758219	77758220	-	C	INS	CBX2	ENST00000310942	human	ensembl	69_37n	1	known	frame_shift_ins	c.977_978	p.H329fs	0.033:0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	8	0	0	4	2	33.33	-	-	-	C	77758220	-	C	77758219	7	5	534	1	0	1	1	0	0	0	0	0	2743	1203	42	0	1343	0	CBX2	17	77758219	Frame_Shift_Ins	INS	-	TCGA-BH-A0E7-01A-11W-A050-09	32538980	77758219	3436991	36	47378										
ZNF98	0	genome.wustl.edu	37	chr19	22586248	22586248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cctatataaattctgctgtgCggtgtccaggcattgccact	9	11	1	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	19	22586248	22586248	C	T	SNP	ZNF98	ENST00000357774	human	ensembl	69_37n	-1	known	missense	c.97	p.A33T	0.004	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360	203	0	0	86	63	42.28	-	-	-	T	22586248	C	T	22586248	3	4	534	1	0	0	0	0	1	0	0	0	18296	768	27	1	1633	1	ZNF98	19	22586248	Missense_Mutation	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09		22586248	36542735	37	47379										
UQCRFS1	0	genome.wustl.edu	37	chr19	29698494	29698494	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tcgtcactggtgaactcataCgtggggacttcaaggttgag	13	8	3	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	19	29698494	29698494	C	T	SNP	UQCRFS1	ENST00000304863	human	ensembl	69_37n	-1	known	silent	c.786	p.T262	0.000	pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	pfam_Ubiqinol_cyt_c_Rdtase_N,pfam_Ubiquinol_cyt_Rdtase_TM,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_Ubiquinol_cyt_Rdtase_TM,superfamily_Globular_prot_asu/bsu,prints_Rieske_Fe-S_prot_C,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	-	no_errors	UQCRFS1	HGNC	ENSG00000169021	197	0	0	85	48	36.09	-	-	-	T	29698494	C	T	29698494	2	4	534	1	0	0	0	0	0	0	0	1	17118	523	19	1		1	UQCRFS1	19	29698494	Silent	SNP	C	TCGA-BH-A0E7-01A-11W-A050-09	7112246	29698494	29430489	38	47380										
HIRA	0	genome.wustl.edu	37	chr22	19349345	19349345	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tacctcaagctcaagttttcGcttggacagtgaggaagcct	10	10	2	1			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	22	19349345	19349345	G	A	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	nonsense	c.1885	p.R629*	1.000	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	140	0	0	74	55	42.31	-	-	-	A	19349345	G	A	19349345	4	1	534	1	0	0	0	0	0	1	0	0	7171	1095	38	1	1208	1	HIRA	22	19349345	Nonsense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09		19349345	31955221	39	47381										
RGL4	0	genome.wustl.edu	37	chr22	24040406	24040406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	cctctgtctctaggaggtccGagttctgcaggaaatgcagc	12	11	3	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	22	24040406	24040406	G	A	SNP	RGL4	ENST00000290691	human	ensembl	69_37n	1	known	missense	c.1268	p.R423Q	0.068	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RGL4	HGNC	ENSG00000159496	81	0	0	20	26	56.52	-	-	-	A	24040406	G	A	24040406	3	1	534	1	0	0	0	0	1	0	0	0	13362	1058	37	1	1306	1	RGL4	22	24040406	Missense_Mutation	SNP	G	TCGA-BH-A0E7-01A-11W-A050-09	4691061	24040406	27264160	40	47382										
PHEX	0	genome.wustl.edu	37	chrX	22245690	22245690	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	ctcttctaccaggcatcacaTtcaccaacaaccagctcttc	3	17	5	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	22245690	22245690	T	A	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	missense	c.2032	p.F678I	0.936	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	316	0	0	159	72	31.17	-	-	-	A	22245690	T	A	22245690	3	1	534	1	0	0	0	0	1	0	0	0	11893	1493	52	5	2110	5	PHEX	23	22245690	Missense_Mutation	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09		22245690	133024870	41	47383										
ZMYM3	0	genome.wustl.edu	37	chrX	70467688	70467691	+	Frame_Shift_Del	DEL	AGTA	AGTA	-													0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	gcgctggcaggtctgggagcAgtaagtacaagtgatacagc							TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	AGTA	AGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	70467688	70467691	AGTA	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.2050_2047	p.Y683fs	1.000:1.000:1.000:1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	107	0	0	48	37	43.53	-	-	-	-	70467691	AGTA	-	70467688	7	5	534	1	0	1	0	1	0	0	0	0	17797	188	7	0	2124	0	ZMYM3	23	70467688	Frame_Shift_Del	DEL	AGTA	TCGA-BH-A0E7-01A-11W-A050-09	48221998	70467688	84802872	42	47384										
ARHGEF6	0	genome.wustl.edu	37	chrX	135772826	135772826	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tatttctccagtcgcatgaaTggtttgctgaggtttgttgt	11	6	1	2			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	135772826	135772826	T	C	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	silent	c.1128	p.P376	0.943	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	254	0	0	166	107	39.19	-	-	-	C	135772826	T	C	135772826	2	2	534	1	0	0	0	0	0	0	0	1	912	1451	51	5		5	ARHGEF6	23	135772826	Silent	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09	65305138	135772826	19497734	43	47385										
F8	0	genome.wustl.edu	37	chrX	154194350	154194350	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	2	0.923792109678705	0.902469135802469	NA	0.902469135802469	0.333333333333333	0.930327025915261	0	tcatctgtgtatgccataaaTcggacttttttgtacttcct	6	9	2	0			TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	154194350	154194350	T	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.1338	p.R446	0.086	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	335	0	0	147	93	38.75	-	-	-	A	154194350	T	A	154194350	2	1	534	1	0	0	0	0	0	0	0	1	5387	1422	50	5		5	F8	23	154194350	Silent	SNP	T	TCGA-BH-A0E7-01A-11W-A050-09	18421524	154194350	1076210	44	47386										
LMO4	0	genome.wustl.edu	37	chr1	87805767	87805767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgccggaatcgcctggtccCgggagatcggtttcactaca	12	13	1	1			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	1	87805767	87805767	C	T	SNP	LMO4	ENST00000370542	human	ensembl	69_37n	1	known	missense	c.371	p.P124L	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO4	HGNC	ENSG00000143013	293	0	0	184	71	27.84	-	-	-	T	87805767	C	T	87805767	3	4	535	1	0	0	0	0	1	0	0	0	8910	652	23	1	381	1	LMO4	1	87805767	Missense_Mutation	SNP	C	TCGA-BH-A0E9-01B-11D-A10Y-09		87805767	161444854	1	47387										
RBM5	0	genome.wustl.edu	37	chr3	50151449	50151449	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	aagaaaactttaaaaatagcTttcagcctgtcaattccttg							TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	50151449	50151449	T	-	DEL	RBM5	ENST00000347869	human	ensembl	69_37n	1	known	frame_shift_del	c.1684	p.Q563fs	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	81	0	0	72	19	20.65	-	-	-	-	50151449	T	-	50151449	7	5	535	1	0	1	0	1	0	0	0	0	13226	1609	56	0	1754	0	RBM5	3	50151449	Frame_Shift_Del	DEL	T	TCGA-BH-A0E9-01B-11D-A10Y-09		50151449	147870981	2	47388										
KLHL6	0	genome.wustl.edu	37	chr3	183209733	183209733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtcagacagacactgctccGggcacgatcctgcggatgtg	13	13	1	2			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	183209733	183209733	G	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.1848	p.P616	0.005	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	16	0	0	38	7	15.56	-	-	-	A	183209733	G	A	183209733	2	1	535	1	0	0	0	0	0	0	0	1	8446	1103	39	1		1	KLHL6	3	183209733	Silent	SNP	G	TCGA-BH-A0E9-01B-11D-A10Y-09	133058284	183209733	14812697	3	47389										
ZNF595	0	genome.wustl.edu	37	chr4	86243	86243	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attcatactggagagaaaccCtacaaatgtaaagaatgtgg	9	6	1	2			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	4	86243	86243	C	A	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.667	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	35	0	0	35	7	16.67	-	-	-	A	86243	C	A	86243	1	1	535	0	1	0	0	0	0	0	0	0	18121	681	24	4		4	ZNF595	4	86243	RNA	SNP	C	TCGA-BH-A0E9-01B-11D-A10Y-09		86243	191068033	4	47390										
CNBD1	0	genome.wustl.edu	37	chr8	88365988	88365988	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caaaaaagaagttgagatggCaatcattgaagataaggacc	10	5	1	4			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	8	88365988	88365988	C	T	SNP	CNBD1	ENST00000521593	human	ensembl	69_37n	1	putative	nonsense	c.187	p.Q63*	0.872	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNBD1	HGNC	ENSG00000176571	136	0	0	107	21	16.41	-	-	-	T	88365988	C	T	88365988	4	4	535	1	0	0	0	0	0	1	0	0	3621	710	25	4	1315	4	CNBD1	8	88365988	Nonsense_Mutation	SNP	C	TCGA-BH-A0E9-01B-11D-A10Y-09		88365988	57998034	5	47391										
KCNV2	0	genome.wustl.edu	37	chr9	2729502	2729503	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	cagagacccacctgggcaggINSttttttgccttcctctgcat							TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	9	2729502	2729503	-	T	INS	KCNV2	ENST00000382082	human	ensembl	69_37n	1	known	frame_shift_ins	c.1413_1414	p.A473fs	0.998:0.999	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	141	0	0	137	16	10.46	-	-	-	T	2729503	-	T	2729502	7	5	535	1	0	1	1	0	0	0	0	0	8149	1252	44	0	1419	0	KCNV2	9	2729502	Frame_Shift_Ins	INS	-	TCGA-BH-A0E9-01B-11D-A10Y-09		2729502	138483929	6	47392										
PTEN	0	genome.wustl.edu	37	chr10	89685316	89685316	+	Splice_Site	DEL	T	T	-													0	0	1	0	0	0	1	1	0	attacaagatatacaatctgTaagtatgttttcttatttgt							TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	10	89685316	89685316	T	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	splice_site_del	c.209+2	e3+2	1.000	-	-	-	no_errors	PTEN	HGNC	ENSG00000171862	133	0	0	71	26	26.26	-	-	-	-	89685316	T	-	89685316	8	5	535	1	0	1	0	1	0	0	1	0	12818	1652	57	0	221	0	PTEN	10	89685316	Splice_Site	DEL	T	TCGA-BH-A0E9-01B-11D-A10Y-09		89685316	45849431	7	47393										
INTS4	0	genome.wustl.edu	37	chr11	77702264	77702265	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	gcatctgctggggaggtagcINStttacacagatctatgtgga							TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	11	77702264	77702265	-	T	INS	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	frame_shift_ins	c.136_135	p.A45fs	1.000:0.998	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	329	0	0	320	47	12.81	-	-	-	T	77702265	-	T	77702264	7	5	535	1	0	1	1	0	0	0	0	0	7834	797	28	0	2843	0	INTS4	11	77702264	Frame_Shift_Ins	INS	-	TCGA-BH-A0E9-01B-11D-A10Y-09		77702264	57304252	8	47394										
ESPL1	0	genome.wustl.edu	37	chr12	53663662	53663662	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaggacctcaggcagtggcCaagcttctgatcaaggcatc	12	11	3	1			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	53663662	53663662	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	silent	c.936	p.A312	0.012	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	82	0	0	115	18	13.53	-	-	-	A	53663662	C	A	53663662	2	1	535	1	0	0	0	0	0	0	0	1	5290	581	21	4		4	ESPL1	12	53663662	Silent	SNP	C	TCGA-BH-A0E9-01B-11D-A10Y-09		53663662	80188233	9	47395										
ACACB	0	genome.wustl.edu	37	chr12	109617027	109617027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtcgcgactgctccatccaGcggcggcatcagaagatcgt	13	13	1	2			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	109617027	109617027	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.1572	p.Q524H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	52	0	0	83	13	13.54	-	-	-	T	109617027	G	T	109617027	3	4	535	1	0	0	0	0	1	0	0	0	107	962	34	4	1606	4	ACACB	12	109617027	Missense_Mutation	SNP	G	TCGA-BH-A0E9-01B-11D-A10Y-09	55953365	109617027	24234868	10	47396										
CDH1	0	genome.wustl.edu	37	chr16	68862178	68862179	+	Frame_Shift_Ins	INS	-	-	AT													0	0	1	0	0	0	1	1	0	ggacaacgtttattactatgINSatgaagaaggaggcggagaa							TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	16	68862178	68862179	-	AT	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2266_2267	p.E757fs	1.000:1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	152	0	0	162	28	14.74	-	-	-	AT	68862179	-	AT	68862178	7	5	535	1	0	1	1	0	0	0	0	0	3124	1290	45	0	2320	0	CDH1	16	68862178	Frame_Shift_Ins	INS	-	TCGA-BH-A0E9-01B-11D-A10Y-09		68862178	21492575	11	47397										
CAMTA2	0	genome.wustl.edu	37	chr17	4883016	4883016	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggggagaagtctgtgatgGtgctaagagcaggagacagc	17	6	1	4			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	17	4883016	4883016	G	C	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.1670	p.T557S	0.266	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	78	0	0	60	15	20	-	-	-	C	4883016	G	C	4883016	3	2	535	1	0	0	0	0	1	0	0	0	2639	1261	44	4	2117	4	CAMTA2	17	4883016	Missense_Mutation	SNP	G	TCGA-BH-A0E9-01B-11D-A10Y-09		4883016	76312194	12	47398										
PTPRU	0	genome.wustl.edu	37	chr1	29630376	29630376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tctgactgcaggagaccagcGcagcggtggggtcactgagg	17	10	2	3			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	1	29630376	29630376	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.2516	p.R839H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	87	0	0	45	19	29.69	-	-	-	A	29630376	G	A	29630376	3	1	536	1	0	0	0	0	1	0	0	0	12896	1087	38	1	2582	1	PTPRU	1	29630376	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		29630376	219620245	1	47399										
PTPN4	0	genome.wustl.edu	37	chr2	120725478	120725478	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	catgtgtctcattgaatgcaAtcagccagtttatccactag	7	10	2	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	2	120725478	120725478	A	G	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	1	known	missense	c.2624	p.N875S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	354	0	0	118	23	16.31	-	-	-	G	120725478	A	G	120725478	3	3	536	1	0	0	0	0	1	0	0	0	12873	101	4	5	2722	5	PTPN4	2	120725478	Missense_Mutation	SNP	A	TCGA-BH-A0EA-01A-11D-A10Y-09		120725478	122473895	2	47400										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	224	0	0	87	36	29.27	-	-	-	G	178952085	A	G	178952085	3	3	536	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0EA-01A-11D-A10Y-09		178952085	19070345	3	47401										
PDZD2	0	genome.wustl.edu	37	chr5	31799548	31799548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	cacctgatcacagcccccccGaaatggagatctgtactgtg	9	14	2	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	5	31799548	31799548	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.193	p.E65K	0.856	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	200	0	0	100	25	20	-	-	-	A	31799548	G	A	31799548	3	1	536	1	0	0	0	0	1	0	0	0	11774	1059	37	1	195	1	PDZD2	5	31799548	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		31799548	149115712	4	47402										
TXNDC15	0	genome.wustl.edu	37	chr5	134210139	134210139	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tggtcccggctgccggtcgaCgaccgccccgcgtcatgcgg	15	17	1	0			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	5	134210139	134210139	C	T	SNP	TXNDC15	ENST00000358387	human	ensembl	69_37n	1	known	nonsense	c.22	p.R8*	0.001	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC15	HGNC	ENSG00000113621	104	0	0	64	14	17.95	-	-	-	T	134210139	C	T	134210139	4	4	536	1	0	0	0	0	0	1	0	0	16891	528	19	1	24	1	TXNDC15	5	134210139	Nonsense_Mutation	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09	102410591	134210139	46705121	5	47403										
XPO5	0	genome.wustl.edu	37	chr6	43538686	43538686	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	ttccactacaattcgagacaGagcatctttaatatggttct	6	9	2	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	6	43538686	43538686	G	C	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.346	p.L116V	0.508	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	315	0	0	126	23	15.44	-	-	-	C	43538686	G	C	43538686	3	2	536	1	0	0	0	0	1	0	0	0	17544	933	33	2	3384	2	XPO5	6	43538686	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		43538686	127576381	6	47404										
EIF2AK1	0	genome.wustl.edu	37	chr7	6085747	6085747	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	cccttaatcaggatttttttTattgcataatactgaccatc	4	9	1	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	7	6085747	6085747	T	A	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	silent	c.585	p.I195	0.999	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	312	0	0	154	58	27.36	-	-	-	A	6085747	T	A	6085747	2	1	536	1	0	0	0	0	0	0	0	1	5031	1744	61	5		5	EIF2AK1	7	6085747	Silent	SNP	T	TCGA-BH-A0EA-01A-11D-A10Y-09		6085747	153052916	7	47405										
ZNF425	0	genome.wustl.edu	37	chr7	148801590	148801590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tgtgcaggcgctggtgggcgCgcatggcgttcctccagaag	17	11	0	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	7	148801590	148801590	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.1373	p.R458H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	29	0	0	14	12	46.15	-	-	-	T	148801590	C	T	148801590	3	4	536	1	0	0	0	0	1	0	0	0	17995	768	27	1	889	1	ZNF425	7	148801590	Missense_Mutation	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09	142715843	148801590	10337073	8	47406										
PRKDC	0	genome.wustl.edu	37	chr8	48839867	48839867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	attcttctagagcattcaggCctacttctgccaagggggta	10	10	4	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	8	48839867	48839867	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.2306	p.G769D	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	290	0	0	138	35	20.23	-	-	-	T	48839867	C	T	48839867	3	4	536	1	0	0	0	0	1	0	0	0	12602	739	26	4	10343	4	PRKDC	8	48839867	Missense_Mutation	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09		48839867	97524155	9	47407										
COL14A1	0	genome.wustl.edu	37	chr8	121238949	121238949	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	cctggcatcccctctcagctGatgaagggctacacaaattg	9	13	1	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	8	121238949	121238949	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.1948	p.D650N	0.968	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	314	0	0	135	29	17.68	-	-	-	A	121238949	G	A	121238949	3	1	536	1	0	0	0	0	1	0	0	0	3701	1290	45	2	2006	2	COL14A1	8	121238949	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09	72399082	121238949	25125073	10	47408										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	246	0	0	107	23	17.56	-	-	-	-	8111434	CA	-	8111433	8	5	536	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-BH-A0EA-01A-11D-A10Y-09		8111433	127423314	11	47409										
CLEC4C	0	genome.wustl.edu	37	chr12	7890152	7890152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	actgaaatgaagtccaagggGttgggcagcagctccaatct	12	9	1	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	12	7890152	7890152	G	T	SNP	CLEC4C	ENST00000360345	human	ensembl	69_37n	-1	known	missense	c.254	p.T85N	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4C	HGNC	ENSG00000198178	108	0	0	54	16	22.86	-	-	-	T	7890152	G	T	7890152	3	4	536	1	0	0	0	0	1	0	0	0	3543	1261	44	4	399	4	CLEC4C	12	7890152	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		7890152	125961743	12	47410										
CLEC4A	0	genome.wustl.edu	37	chr12	8290866	8290866	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	aaaggtcagtttgtgagatgAtgaagatccacttatgaact	10	5	1	5			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	12	8290866	8290866	A	T	SNP	CLEC4A	ENST00000229332	human	ensembl	69_37n	1	known	missense	c.697	p.M233L	0.169	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729	463	0	0	186	77	29.28	-	-	-	T	8290866	A	T	8290866	3	4	536	1	0	0	0	0	1	0	0	0	3542	333	12	5	719	5	CLEC4A	12	8290866	Missense_Mutation	SNP	A	TCGA-BH-A0EA-01A-11D-A10Y-09	400714	8290866	125561029	13	47411										
TC2N	0	genome.wustl.edu	37	chr14	92278710	92278710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tgtcctgggttgaatgtaagAtaacttaaacttgggcacca	10	7	0	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	14	92278710	92278710	A	G	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.247	p.S83P	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	451	0	0	178	44	19.82	-	-	-	G	92278710	A	G	92278710	3	3	536	1	0	0	0	0	1	0	0	0	15760	333	12	5	1265	5	TC2N	14	92278710	Missense_Mutation	SNP	A	TCGA-BH-A0EA-01A-11D-A10Y-09		92278710	15070830	14	47412										
RABEP2	0	genome.wustl.edu	37	chr16	28935782	28935782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	cactgccgctgcaccgcagcCacagcctcggccttcgtgct	10	19	0	0			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	16	28935782	28935782	C	T	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	silent	c.216	p.V72	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	63	0	0	27	8	22.86	-	-	-	T	28935782	C	T	28935782	2	4	536	1	0	0	0	0	0	0	0	1	13045	581	21	4		4	RABEP2	16	28935782	Silent	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09		28935782	61418971	15	47413										
CBFB	0	genome.wustl.edu	37	chr16	67100613	67100613	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	gaaggctcccatgattctgaAtggagtctgtgttatctgga	12	7	3	2			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	16	67100613	67100613	A	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.311	p.N104S	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	692	0	0	206	95	31.56	-	-	-	G	67100613	A	G	67100613	3	3	536	1	0	0	0	0	1	0	0	0	2724	101	4	5	325	5	CBFB	16	67100613	Missense_Mutation	SNP	A	TCGA-BH-A0EA-01A-11D-A10Y-09	38164831	67100613	23254140	16	47414										
SDK2	0	genome.wustl.edu	37	chr17	71394498	71394498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tgaggtcgggcacctccatgGagcgggcatcgggctcattg	16	11	1	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	17	71394498	71394498	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.3164	p.S1055F	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	181	0	0	58	29	33.33	-	-	-	A	71394498	G	A	71394498	3	1	536	1	0	0	0	0	1	0	0	0	14057	1174	41	2	3446	2	SDK2	17	71394498	Missense_Mutation	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		71394498	9800712	17	47415										
RTTN	0	genome.wustl.edu	37	chr18	67727270	67727270	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tggccgtggtgatgtactttCctggtgacctattattgaaa	11	7	0	3			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	18	67727270	67727270	C	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	nonsense	c.4756	p.E1586*	0.286	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	475	0	0	180	62	25.62	-	-	-	A	67727270	C	A	67727270	4	1	536	1	0	0	0	0	0	1	0	0	13823	864	30	2	1980	2	RTTN	18	67727270	Nonsense_Mutation	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09		67727270	10349978	18	47416										
TSHZ3	0	genome.wustl.edu	37	chr19	31767562	31767562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	tgctggcaaaggtccgattgCaaagtttgcactgataggaa	12	7	0	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	19	31767562	31767562	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.3137	p.C1046Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	526	0	0	273	69	20.18	-	-	-	T	31767562	C	T	31767562	3	4	536	1	0	0	0	0	1	0	0	0	16721	710	25	4	112	4	TSHZ3	19	31767562	Missense_Mutation	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09		31767562	27361421	19	47417										
CD93	0	genome.wustl.edu	37	chr20	23066476	23066476	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	taaggcgtgtcctcccccccGcccacccagctgaagccctt	8	20	0	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	20	23066476	23066476	G	A	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	0.557	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pirsf_CD93/CD141,pfscan_C-type_lectin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	53	0	0	27	4	12.9	-	-	-	A	23066476	G	A	23066476	2	1	536	1	0	0	0	0	0	0	0	1	3076	1074	38	1		1	CD93	20	23066476	Silent	SNP	G	TCGA-BH-A0EA-01A-11D-A10Y-09		23066476	39959044	20	47418										
CXorf65	0	genome.wustl.edu	37	chrX	70324091	70324091	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	3	0.501110577686776	1.92857142857143	7.71428571428571	1.4025974025974	1	1	0	ggctggggtgtaggaacattCagtcggctggtagggagagg	20	5	1	1			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	X	70324091	70324091	C	T	SNP	CXorf65	ENST00000438526	human	ensembl	69_37n	-1	known	silent	c.483	p.L161	0.001	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	CXorf65	HGNC	ENSG00000204165	130	0	0	48	34	41.46	-	-	-	T	70324091	C	T	70324091	2	4	536	1	0	0	0	0	0	0	0	1	4148	841	29	2		2	CXorf65	23	70324091	Silent	SNP	C	TCGA-BH-A0EA-01A-11D-A10Y-09		70324091	84946469	21	47419										
SPEN	0	genome.wustl.edu	37	chr1	16254679	16254679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tatcctgaggattccaggcgGgactatccagctcgagggag	14	10	0	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	1	16254679	16254679	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.1944	p.R648	0.952	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	84	0	0	82	18	18	-	-	-	A	16254679	G	A	16254679	2	1	537	1	0	0	0	0	0	0	0	1	15129	1219	43	4		4	SPEN	1	16254679	Silent	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09		16254679	232995942	1	47420										
NTRK1	0	genome.wustl.edu	37	chr1	156843599	156843599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ggcagccaatgagaccgtgcGgcacgggtgtctgcgcctca	15	13	2	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	1	156843599	156843599	G	A	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.1025	p.R342Q	0.019	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	48	0	0	32	12	27.27	-	-	-	A	156843599	G	A	156843599	3	1	537	1	0	0	0	0	1	0	0	0	10779	1116	39	1	1185	1	NTRK1	1	156843599	Missense_Mutation	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09	140588920	156843599	92407022	2	47421										
USP39	0	genome.wustl.edu	37	chr2	85857864	85857864	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gctctatctaatgttcctccTctccggaactactttctgga	6	13	4	0			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	2	85857864	85857864	T	G	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	silent	c.744	p.P248	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	81	0	0	72	12	14.29	-	-	-	G	85857864	T	G	85857864	2	3	537	1	0	0	0	0	0	0	0	1	17167	1538	54	5		5	USP39	2	85857864	Silent	SNP	T	TCGA-BH-A0EB-01A-11W-A050-09		85857864	157341509	3	47422										
IL1RL2	0	genome.wustl.edu	37	chr2	102804317	102804317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tcttctcccttccttgcagcCcggtttggggatgtggtcct	11	13	2	0			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	2	102804317	102804317	C	G	SNP	IL1RL2	ENST00000441515	human	ensembl	69_37n	1	known	missense	c.70	p.P24A	0.057	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RL2	HGNC	ENSG00000115598	174	0	0	75	11	12.64	-	-	-	G	102804317	C	G	102804317	3	3	537	1	0	0	0	0	1	0	0	0	7718	637	22	4		4	IL1RL2	2	102804317	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	16946453	102804317	140395056	4	47423										
PDE11A	0	genome.wustl.edu	37	chr2	178565928	178565928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ttccatagagttgggccaggGcagagccactcctgaaagag	13	10	0	4			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	2	178565928	178565928	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.2165	p.A722V	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	133	0	0	79	16	16.84	-	-	-	A	178565928	G	A	178565928	3	1	537	1	0	0	0	0	1	0	0	0	11704	1203	42	4	664	4	PDE11A	2	178565928	Missense_Mutation	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09	75761611	178565928	64633445	5	47424										
CNTN4	0	genome.wustl.edu	37	chr3	3085276	3085276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	atatcttaatttttttatagCaccaagtcaaccccccggaa	4	11	2	0			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	3	3085276	3085276	C	T	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.2699	p.P900L	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	93	0	0	113	31	21.38	-	-	-	T	3085276	C	T	3085276	3	4	537	1	0	0	0	0	1	0	0	0	3673	724	25	4	2777	4	CNTN4	3	3085276	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		3085276	194937154	6	47425										
GHRL	0	genome.wustl.edu	37	chr3	10331484	10331484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ctctgccccttctgcttgacCtccatcttccgggcggagcc	9	18	3	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	3	10331484	10331484	C	T	SNP	GHRL	ENST00000335542	human	ensembl	69_37n	-1	known	missense	c.187	p.G63S	0.000	pfam_Motilin_assoc	pfam_Motilin_assoc,pfam_Motilin_ghrelin,prints_Preproghrelin	-	no_errors	GHRL	HGNC	ENSG00000157017	173	0	0	65	44	40.37	-	-	-	T	10331484	C	T	10331484	3	4	537	1	0	0	0	0	1	0	0	0	6426	681	24	4	178	4	GHRL	3	10331484	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	7246208	10331484	187690946	7	47426										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	95	33	25.78	-	-	-	G	178952085	A	G	178952085	3	3	537	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0EB-01A-11W-A050-09	168620601	178952085	19070345	8	47427										
PRDM8	0	genome.wustl.edu	37	chr4	81124648	81124648	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gcaatgagtccttcagggagCgccaccacctctccaggcac	10	16	2	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	4	81124648	81124648	C	G	SNP	PRDM8	ENST00000339711	human	ensembl	69_37n	1	known	missense	c.2032	p.R678G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784	63	0	0	19	10	34.48	-	-	-	G	81124648	C	G	81124648	3	3	537	1	0	0	0	0	1	0	0	0	12543	768	27	3	2042	3	PRDM8	4	81124648	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		81124648	110029628	9	47428										
IMPG1	0	genome.wustl.edu	37	chr6	76751758	76751758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ctcatagttgacattttgtaCattttttcagtactttcagt	5	7	3	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	6	76751758	76751758	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.153	p.M51I	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	306	1	0.33	310	42	11.86	-	-	-	T	76751758	C	T	76751758	3	4	537	1	0	0	0	0	1	0	0	0	7782	478	17	4	2304	4	IMPG1	6	76751758	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		76751758	94363309	10	47429										
MLLT4	0	genome.wustl.edu	37	chr6	168312082	168312082	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tatgtattgtccaaccagtaCagacctgacatcagccctac	6	13	1	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	6	168312082	168312082	C	G	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	nonsense	c.1950	p.Y650*	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	160	0	0	115	41	26.28	-	-	-	G	168312082	C	G	168312082	4	3	537	1	0	0	0	0	0	1	0	0	9700	489	17	4	2008	4	MLLT4	6	168312082	Nonsense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	91560324	168312082	2802985	11	47430										
ZSCAN21	0	genome.wustl.edu	37	chr7	99654841	99654841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ccaactccgggtgctctgctGtgagtggctgaggcccgaga	15	12	1	3			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	7	99654841	99654841	G	A	SNP	ZSCAN21	ENST00000292450	human	ensembl	69_37n	1	known	missense	c.212	p.C71Y	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	43	0	0	22	10	31.25	-	-	-	A	99654841	G	A	99654841	3	1	537	1	0	0	0	0	1	0	0	0	18325	1377	48	4	214	4	ZSCAN21	7	99654841	Missense_Mutation	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09		99654841	59483822	12	47431										
C8orf4	0	genome.wustl.edu	37	chr8	40011156	40011156	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	acagcctctcgtaagaaagcCgtgggcaacatctttgaaaa	9	10	2	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	8	40011156	40011156	C	T	SNP	C8orf4	ENST00000315792	human	ensembl	69_37n	1	known	silent	c.105	p.A35	0.001	NULL	NULL	-	no_errors	C8orf4	HGNC	ENSG00000176907	144	0	0	135	61	31.12	-	-	-	T	40011156	C	T	40011156	2	4	537	1	0	0	0	0	0	0	0	1	2449	639	23	1		1	C8orf4	8	40011156	Silent	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		40011156	106352866	13	47432										
ANK1	0	genome.wustl.edu	37	chr8	41591581	41591581	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	agccagatgcaagccattcaAcccattctgtaaagagcaga	8	11	2	3			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	8	41591581	41591581	A	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.136	p.L46M	0.979	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	126	0	0	103	14	11.97	-	-	-	T	41591581	A	T	41591581	3	4	537	1	0	0	0	0	1	0	0	0	620	40	2	5	6023	5	ANK1	8	41591581	Missense_Mutation	SNP	A	TCGA-BH-A0EB-01A-11W-A050-09	1580425	41591581	104772441	14	47433										
ZFHX4	0	genome.wustl.edu	37	chr8	77768353	77768353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tggcacagcaagaacttgatCgtataaagaaagcttcagac	9	8	1	4			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	8	77768353	77768353	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.9196	p.R3066C	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	63	0	0	54	17	23.94	-	-	-	T	77768353	C	T	77768353	3	4	537	1	0	0	0	0	1	0	0	0	17731	884	31	1	9230	1	ZFHX4	8	77768353	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	36176772	77768353	68595669	15	47434										
TOPORS	0	genome.wustl.edu	37	chr9	32541997	32541997	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gatgatcggctgtctgaaaaGgtatcactctcatttttgta	9	7	3	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	9	32541997	32541997	G	T	SNP	TOPORS	ENST00000360538	human	ensembl	69_37n	-1	known	silent	c.2526	p.T842	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579	132	0	0	105	23	17.97	-	-	-	T	32541997	G	T	32541997	2	4	537	1	0	0	0	0	0	0	0	1	16466	987	35	4		4	TOPORS	9	32541997	Silent	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09		32541997	108671434	16	47435										
NUP214	0	genome.wustl.edu	37	chr9	134003062	134003062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gcagatttttcctactaaaaAtcttcttattcaaaataaac	2	8	3	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	9	134003062	134003062	A	G	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.197	p.N66S	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	73	0	0	58	17	22.67	-	-	-	G	134003062	A	G	134003062	3	3	537	1	0	0	0	0	1	0	0	0	10835	101	4	5	203	5	NUP214	9	134003062	Missense_Mutation	SNP	A	TCGA-BH-A0EB-01A-11W-A050-09	101461065	134003062	7210369	17	47436										
LRIT1	0	genome.wustl.edu	37	chr10	85997061	85997062	+	Frame_Shift_Del	DEL	CA	CA	-													0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	atgagctcctgcgggagcctCatcagctggttgctggagag							TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	10	85997061	85997062	CA	-	DEL	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	frame_shift_del	c.504_503	p.M168fs	0.995:0.993	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	23	0	0	18	18	50	-	-	-	-	85997062	CA	-	85997061	7	5	537	1	0	1	0	1	0	0	0	0	9013	826	29	0	1379	0	LRIT1	10	85997061	Frame_Shift_Del	DEL	CA	TCGA-BH-A0EB-01A-11W-A050-09		85997061	49537686	18	47437										
SORCS1	0	genome.wustl.edu	37	chr10	108412155	108412155	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	cctacctcttctaattgcacCatgagagtgacgttgtgtcc	8	12	2	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	10	108412155	108412155	C	G	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	missense	c.2460	p.M820I	1.000	pfam_PKD_dom,superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	133	0	0	121	26	17.69	-	-	-	G	108412155	C	G	108412155	3	3	537	1	0	0	0	0	1	0	0	0	15019	594	21	4	1316	4	SORCS1	10	108412155	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	22415094	108412155	27122592	19	47438										
FJX1	0	genome.wustl.edu	37	chr11	35641314	35641315	+	Frame_Shift_Ins	INS	-	-	T													0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	accgcgcggcgcgtcctggaINSgctgcaccgcggacaggacg							TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	11	35641314	35641315	-	T	INS	FJX1	ENST00000317811	human	ensembl	69_37n	1	known	frame_shift_ins	c.1130_1131	p.E377fs	1.000:1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FJX1	HGNC	ENSG00000179431	17	0	0	5	5	50	-	-	-	T	35641315	-	T	35641314	7	5	537	1	0	1	1	0	0	0	0	0	5947	304	11	0	1132	0	FJX1	11	35641314	Frame_Shift_Ins	INS	-	TCGA-BH-A0EB-01A-11W-A050-09		35641314	99365202	20	47439										
DNAH10	0	genome.wustl.edu	37	chr12	124387592	124387592	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gagacgaccctggcagaggtCatgcccatcctggaggccgc	14	14	1	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	12	124387592	124387592	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.9393	p.V3131	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	85	0	0	118	17	12.59	-	-	-	T	124387592	C	T	124387592	2	4	537	1	0	0	0	0	0	0	0	1	4634	813	29	2		2	DNAH10	12	124387592	Silent	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		124387592	9464303	21	47440										
ABCC6	0	genome.wustl.edu	37	chr16	16315544	16315544	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tggggacatccggaggtagcCccggccatggtggtggatga	18	9	0	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	16	16315544	16315544	C	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.181	p.G61C	0.509	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	133	0	0	95	32	24.81	-	-	-	A	16315544	C	A	16315544	3	1	537	1	0	0	0	0	1	0	0	0	57	623	22	4	4531	4	ABCC6	16	16315544	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09		16315544	74039209	22	47441										
ATP2A1	0	genome.wustl.edu	37	chr16	28909329	28909329	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tctcctctccaggtgatccgCcagctaatgaagaaggaatt	9	11	2	3			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	16	28909329	28909329	C	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	silent	c.1428	p.R476	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	55	0	0	45	22	32.84	-	-	-	A	28909329	C	A	28909329	2	1	537	1	0	0	0	0	0	0	0	1	1140	726	26	4		4	ATP2A1	16	28909329	Silent	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	12593785	28909329	61445424	23	47442										
TCF3	0	genome.wustl.edu	37	chr19	1612215	1612216	+	Frame_Shift_Ins	INS	-	-	TA													0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gggagcctacctcgcacctgINSctgctccagccccaggatga							TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	19	1612215	1612216	-	TA	INS	TCF3	ENST00000344749	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1804_1803	p.Q601fs	1.000:1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF3	HGNC	ENSG00000071564	14	0	0	9	5	35.71	-	-	-	TA	1612216	-	TA	1612215	7	5	537	1	0	1	1	0	0	0	0	0	15789	1328	46	0	159	0	TCF3	19	1612215	Frame_Shift_Ins	INS	-	TCGA-BH-A0EB-01A-11W-A050-09		1612215	57516768	24	47443										
RAVER1	0	genome.wustl.edu	37	chr19	10434107	10434107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	gcggccggggggcccaggggCgcagaaggagactcgcaggt	21	11	0	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	19	10434107	10434107	C	T	SNP	RAVER1	ENST00000293677	human	ensembl	69_37n	-1	known	missense	c.943	p.A315T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER1	HGNC	ENSG00000161847	24	0	0	8	5	35.71	-	-	-	T	10434107	C	T	10434107	3	4	537	1	0	0	0	0	1	0	0	0	13177	768	27	1	1367	1	RAVER1	19	10434107	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	8821892	10434107	48694876	25	47444										
MYO9B	0	genome.wustl.edu	37	chr19	17313112	17313112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	aacgacttcgagccagtgaaGgtgggcagcccagcatgcca	13	12	0	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	19	17313112	17313112	G	T	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.4836	p.K1612N	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	36	0	0	31	5	13.89	-	-	-	T	17313112	G	T	17313112	3	4	537	1	0	0	0	0	1	0	0	0	10157	1014	35	4	4942	4	MYO9B	19	17313112	Missense_Mutation	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09	6879005	17313112	41815871	26	47445										
MEGF8	0	genome.wustl.edu	37	chr19	42840407	42840407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	aggtgattccggcaggcggaCggccccctgctgccactggc	15	15	0	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	19	42840407	42840407	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.1153	p.R385W	0.999	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	38	0	0	25	7	21.88	-	-	-	T	42840407	C	T	42840407	3	4	537	1	0	0	0	0	1	0	0	0	9534	527	19	1	1175	1	MEGF8	19	42840407	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	25527295	42840407	16288576	27	47446										
ZNF765	0	genome.wustl.edu	37	chr19	53911368	53911368	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	ttcttgtaggcctgaaacccAtatttctaatgactatggga	8	8	2	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	19	53911368	53911368	A	G	SNP	ZNF765	ENST00000396408	human	ensembl	69_37n	1	known	missense	c.560	p.H187R	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417	76	0	0	106	21	16.41	-	-	-	G	53911368	A	G	53911368	3	3	537	1	0	0	0	0	1	0	0	0	18233	217	8	5	570	5	ZNF765	19	53911368	Missense_Mutation	SNP	A	TCGA-BH-A0EB-01A-11W-A050-09	11070961	53911368	5217615	28	47447										
MOSPD2	0	genome.wustl.edu	37	chrX	14910870	14910870	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tcagataaatatgatgcacgTgatgttgaaaggctacaaca	9	6	1	4			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	X	14910870	14910870	T	A	SNP	MOSPD2	ENST00000380492	human	ensembl	69_37n	1	known	silent	c.105	p.R35	1.000	superfamily_CRAL/TRIO_N_dom	pfam_CRAL-TRIO_dom,pfam_Major_sperm,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_Major_sperm	-	no_errors	MOSPD2	HGNC	ENSG00000130150	213	0	0	204	56	21.46	-	-	-	A	14910870	T	A	14910870	2	1	537	1	0	0	0	0	0	0	0	1	9788	1683	59	5		5	MOSPD2	23	14910870	Silent	SNP	T	TCGA-BH-A0EB-01A-11W-A050-09		14910870	140359690	29	47448										
PHKA2	0	genome.wustl.edu	37	chrX	18943843	18943843	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	tatagtttagaggttccaagGacaccaatatgtcgatacgg	10	7	0	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	X	18943843	18943843	G	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	silent	c.1512	p.V504	0.914	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	194	0	0	161	38	19.1	-	-	-	T	18943843	G	T	18943843	2	4	537	1	0	0	0	0	0	0	0	1	11918	1161	41	2		2	PHKA2	23	18943843	Silent	SNP	G	TCGA-BH-A0EB-01A-11W-A050-09	4032973	18943843	136326717	30	47449										
XK	0	genome.wustl.edu	37	chrX	37553705	37553705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	cccaccgatcagcgttcagcCgggcgtcggtgatccaggct	13	15	2	1			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	X	37553705	37553705	C	T	SNP	XK	ENST00000378616	human	ensembl	69_37n	1	known	missense	c.412	p.R138W	0.998	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597	151	0	0	199	26	11.56	-	-	-	T	37553705	C	T	37553705	3	4	537	1	0	0	0	0	1	0	0	0	17528	643	23	1	418	1	XK	23	37553705	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	18609862	37553705	117716855	31	47450										
UPF3B	0	genome.wustl.edu	37	chrX	118968924	118968924	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	2	0.989410657549952	0.727485380116959	0	0.935338345864662	0.333333333333333	0.930327025915261	0	atctccagacttggtgctgtCatcagggggacagagtcgat	13	9	3	2			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3861ca01-bcc3-42a9-835d-1ef9f1a053bd	991496de-9acd-43e0-b853-2c19c155254e	X	118968924	118968924	C	T	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	missense	c.1369	p.D457N	0.996	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	174	0	0	155	66	29.86	-	-	-	T	118968924	C	T	118968924	3	4	537	1	0	0	0	0	1	0	0	0	17103	826	29	2	86	2	UPF3B	23	118968924	Missense_Mutation	SNP	C	TCGA-BH-A0EB-01A-11W-A050-09	81415219	118968924	36301636	32	47451										
MTOR	0	genome.wustl.edu	37	chr1	11204742	11204742	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	agatctggcggatgatctctCgtcgctcggggacaagtttg	14	9	2	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	11204742	11204742	C	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.4835	p.R1612P	0.995	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	92	0	0	83	23	21.7	-	-	-	G	11204742	C	G	11204742	3	3	538	1	0	0	0	0	1	0	0	0	10026	884	31	3	2914	3	MTOR	1	11204742	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		11204742	238045879	1	47452										
ARID1A	0	genome.wustl.edu	37	chr1	27089586	27089586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgcatggacagcctggcatcCcaccttatggcacactccct	8	16	0	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	27089586	27089586	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.2542	p.P848S	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	59	0	0	57	14	19.72	-	-	-	T	27089586	C	T	27089586	3	4	538	1	0	0	0	0	1	0	0	0	915	623	22	4	2572	4	ARID1A	1	27089586	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	15884844	27089586	222161035	2	47453										
SNX7	0	genome.wustl.edu	37	chr1	99164273	99164273	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tttttttagaatattttgatGaaatgaaagaatatggccca	7	3	0	5			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	99164273	99164273	G	A	SNP	SNX7	ENST00000306121	human	ensembl	69_37n	1	known	missense	c.850	p.E284K	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	92	0	0	96	14	12.73	-	-	-	A	99164273	G	A	99164273	3	1	538	1	0	0	0	0	1	0	0	0	14996	1291	45	2	872	2	SNX7	1	99164273	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	72074687	99164273	150086348	3	47454										
RBM15	0	genome.wustl.edu	37	chr1	110884723	110884723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gtcctatttaaagcaaaagcAggcagccggggtgatcagcc	12	10	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	110884723	110884723	A	G	SNP	RBM15	ENST00000369784	human	ensembl	69_37n	1	known	missense	c.2696	p.Q899R	1.000	pfam_SPOC_C,superfamily_SPOC-like,pfscan_SPOC_met	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	102	0	0	80	9	10.11	-	-	-	G	110884723	A	G	110884723	3	3	538	1	0	0	0	0	1	0	0	0	13199	188	7	5	2698	5	RBM15	1	110884723	Missense_Mutation	SNP	A	TCGA-BH-A0EE-01A-11W-A050-09	11720450	110884723	138365898	4	47455										
OLFML3	0	genome.wustl.edu	37	chr1	114523758	114523758	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	acccttgccatggctgcccgGaaagcttcccgagtccgggt	12	15	0	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	114523758	114523758	G	A	SNP	OLFML3	ENST00000320334	human	ensembl	69_37n	1	known	silent	c.588	p.R196	0.553	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774	100	0	0	113	66	36.87	-	-	-	A	114523758	G	A	114523758	2	1	538	1	0	0	0	0	0	0	0	1	10932	1161	41	2		2	OLFML3	1	114523758	Silent	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	3639035	114523758	134726863	5	47456										
PTGFRN	0	genome.wustl.edu	37	chr1	117527304	117527304	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tggcttggtaatccgtagatGacatggcctttgatgtgtcc	12	8	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	117527304	117527304	G	C	SNP	PTGFRN	ENST00000393203	human	ensembl	69_37n	1	known	missense	c.2170	p.D724H	0.892	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PTGFRN	HGNC	ENSG00000134247	285	0	0	352	51	12.59	-	-	-	C	117527304	G	C	117527304	3	2	538	1	0	0	0	0	1	0	0	0	12831	1290	45	2	2200	2	PTGFRN	1	117527304	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	3003546	117527304	131723317	6	47457										
GPA33	0	genome.wustl.edu	37	chr1	167024317	167024317	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gctgcaaccacgcccaccgcGatgcccacatacagggccac	9	19	0	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	167024317	167024317	G	A	SNP	GPA33	ENST00000367868	human	ensembl	69_37n	-1	known	silent	c.723	p.I241	0.167	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	GPA33	HGNC	ENSG00000143167	111	0	0	180	22	10.89	-	-	-	A	167024317	G	A	167024317	2	1	538	1	0	0	0	0	0	0	0	1	6636	1048	37	1		1	GPA33	1	167024317	Silent	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	49497013	167024317	82226304	7	47458										
TNR	0	genome.wustl.edu	37	chr1	175365873	175365873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	acatattccgtcactgccatCggcccgtcccattccagctc	6	18	1	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	1	175365873	175365873	C	T	SNP	TNR	ENST00000422274	human	ensembl	69_37n	-1	known	missense	c.220	p.D74N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNR	HGNC	ENSG00000116147	53	0	0	53	10	15.87	-	-	-	T	175365873	C	T	175365873	3	4	538	1	0	0	0	0	1	0	0	0	16433	871	31	1	3105	1	TNR	1	175365873	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	8341556	175365873	73884748	8	47459										
BIRC6	0	genome.wustl.edu	37	chr2	32673930	32673930	+	Frame_Shift_Del	DEL	A	A	-													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	agatgagtggctcttcttgtAaaaatgtttataacagcagc							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	2	32673930	32673930	A	-	DEL	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	frame_shift_del	c.4552	p.N1519fs	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	290	0	0	71	43	37.39	-	-	-	-	32673930	A	-	32673930	7	5	538	1	0	1	0	1	0	0	0	0	1443	363	13	0	4638	0	BIRC6	2	32673930	Frame_Shift_Del	DEL	A	TCGA-BH-A0EE-01A-11W-A050-09		32673930	210525443	9	47460										
LHCGR	0	genome.wustl.edu	37	chr2	48982717	48982717	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gggcacgcagttgcagggctCagggcagagcgcctcgcgca	17	13	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	2	48982717	48982717	C	T	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.94	p.E32K	0.955	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	8	0	0	7	4	36.36	-	-	-	T	48982717	C	T	48982717	3	4	538	1	0	0	0	0	1	0	0	0	8817	835	29	2	2049	2	LHCGR	2	48982717	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	16308787	48982717	194216656	10	47461										
TTC21B	0	genome.wustl.edu	37	chr2	166771856	166771856	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttcaatatctccttgggctaGagcaaggtctgcattagcaa	9	9	3	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	2	166771856	166771856	G	T	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	missense	c.1993	p.L665I	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	177	0	0	126	23	15.44	-	-	-	T	166771856	G	T	166771856	3	4	538	1	0	0	0	0	1	0	0	0	16785	933	33	2	2017	2	TTC21B	2	166771856	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	117789139	166771856	76427517	11	47462										
ERBB4	0	genome.wustl.edu	37	chr2	212652791	212652791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	acacaagagtcaagttggaaGgccatgggttccgaacaata	11	8	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	2	212652791	212652791	G	C	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.515	p.P172R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	130	0	0	93	13	12.26	-	-	-	C	212652791	G	C	212652791	3	2	538	1	0	0	0	0	1	0	0	0	5246	1000	35	4	3511	4	ERBB4	2	212652791	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	45880935	212652791	30546582	12	47463										
CUL3	0	genome.wustl.edu	37	chr2	225368461	225368461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gtgttgtttataataacgttCaaatacatctttttcttgca	5	6	3	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	2	225368461	225368461	C	T	SNP	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	missense	c.1285	p.E429K	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	202	0	0	75	58	43.61	-	-	-	T	225368461	C	T	225368461	3	4	538	1	0	0	0	0	1	0	0	0	4087	835	29	2	1053	2	CUL3	2	225368461	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	12715670	225368461	17830912	13	47464										
ATG7	0	genome.wustl.edu	37	chr3	11596291	11596291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ccttctccatgcagatctggGacatgagcgatgatgagacc	11	11	2	4			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	11596291	11596291	G	A	SNP	ATG7	ENST00000354449	human	ensembl	69_37n	1	known	missense	c.2086	p.D696N	1.000	tigrfam_E1-like_Apg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	-	no_errors	ATG7	HGNC	ENSG00000197548	73	0	0	39	9	18.37	-	-	-	A	11596291	G	A	11596291	3	1	538	1	0	0	0	0	1	0	0	0	1105	1174	41	2	2156	2	ATG7	3	11596291	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		11596291	186426139	14	47465										
TWF2	0	genome.wustl.edu	37	chr3	52265976	52265976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tcacgggggagttatcaggcGaccaggcgaggaagagccat	16	9	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	52265976	52265976	G	A	SNP	TWF2	ENST00000305533	human	ensembl	69_37n	-1	known	missense	c.266	p.S89L	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF2	HGNC	ENSG00000247596	42	0	0	25	10	28.57	-	-	-	A	52265976	G	A	52265976	3	1	538	1	0	0	0	0	1	0	0	0	16879	1059	37	1	811	1	TWF2	3	52265976	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	40669685	52265976	145756454	15	47466										
CACNA2D3	0	genome.wustl.edu	37	chr3	54603876	54603876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgccttcgactgcaggaaccGaaaatggtaggcagtggtca	13	9	1	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	54603876	54603876	G	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.731	p.R244Q	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	144	0	0	117	42	26.42	-	-	-	A	54603876	G	A	54603876	3	1	538	1	0	0	0	0	1	0	0	0	2575	1058	37	1	757	1	CACNA2D3	3	54603876	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	2337900	54603876	143418554	16	47467										
ADCY5	0	genome.wustl.edu	37	chr3	123166519	123166519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	catgtggtcctggtggaaggCggcgcggttgcaaagcacag	17	9	0	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	123166519	123166519	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.874	p.A292T	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	16	0	0	9	5	35.71	-	-	-	T	123166519	C	T	123166519	3	4	538	1	0	0	0	0	1	0	0	0	297	768	27	1	2995	1	ADCY5	3	123166519	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	68562643	123166519	74855911	17	47468										
ASTE1	0	genome.wustl.edu	37	chr3	130743358	130743358	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttcggtagggttggcaaaatGagacaaccaattcagaagtc	11	7	1	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	130743358	130743358	G	T	SNP	ASTE1	ENST00000264992	human	ensembl	69_37n	-1	known	missense	c.793	p.H265N	0.946	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	85	0	0	67	12	15	-	-	-	T	130743358	G	T	130743358	3	4	538	1	0	0	0	0	1	0	0	0	1066	1290	45	2	1262	2	ASTE1	3	130743358	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	7576839	130743358	67279072	18	47469										
HPS3	0	genome.wustl.edu	37	chr3	148871407	148871407	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cagaacctgaagccattccaGagagaagacagtcacccaag	9	12	1	5			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	148871407	148871407	G	A	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.1372	p.E458K	1.000	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	200	0	0	202	26	11.35	-	-	-	A	148871407	G	A	148871407	3	1	538	1	0	0	0	0	1	0	0	0	7391	943	33	2	1398	2	HPS3	3	148871407	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	18128049	148871407	49151023	19	47470										
PIK3CA	0	genome.wustl.edu	37	chr3	178942489	178942489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gtttttaactattttaaaggCttgaagagtgtcgaattatg	9	3	0	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	3	178942489	178942489	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2296	p.L766F	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	76	0	0	84	14	14.29	-	-	-	T	178942489	C	T	178942489	3	4	538	1	0	0	0	0	1	0	0	0	11987	811	28	4	2354	4	PIK3CA	3	178942489	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	30071082	178942489	19079941	20	47471										
MRFAP1	0	genome.wustl.edu	37	chr4	6642662	6642662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tggagcccgaggaggatttcGagcagtttctgctcccggtc	14	11	1	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	4	6642662	6642662	G	A	SNP	MRFAP1	ENST00000320912	human	ensembl	69_37n	1	known	missense	c.73	p.E25K	0.997	NULL	NULL	-	no_errors	MRFAP1	HGNC	ENSG00000179010	46	0	0	38	7	15.56	-	-	-	A	6642662	G	A	6642662	3	1	538	1	0	0	0	0	1	0	0	0	9833	1059	37	1	75	1	MRFAP1	4	6642662	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		6642662	184511614	21	47472										
KIAA0232	0	genome.wustl.edu	37	chr4	6865866	6865866	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gcaaagcaggttgtcagtttCctgcttatgaagataatcca	9	8	1	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	4	6865866	6865866	C	G	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.3757	p.P1253A	0.998	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	77	0	0	73	24	24.49	-	-	-	G	6865866	C	G	6865866	3	3	538	1	0	0	0	0	1	0	0	0	8215	855	30	2	3775	2	KIAA0232	4	6865866	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	223204	6865866	184288410	22	47473										
ELF2	0	genome.wustl.edu	37	chr4	139980483	139980483	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgttaatgcttcctgatccaGtcagatttgactttgtctgc	8	9	2	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	4	139980483	139980483	G	C	SNP	ELF2	ENST00000379550	human	ensembl	69_37n	-1	known	missense	c.1436	p.T479S	0.994	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF2	HGNC	ENSG00000109381	160	0	0	142	62	30.39	-	-	-	C	139980483	G	C	139980483	3	2	538	1	0	0	0	0	1	0	0	0	5091	1029	36	4	349	4	ELF2	4	139980483	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	133114617	139980483	51173793	23	47474										
VCAN	0	genome.wustl.edu	37	chr5	82837218	82837218	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aacagaggtgcctgatgtgaTggaaggatccaatcccccat	11	10	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	5	82837218	82837218	T	C	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.8396	p.M2799T	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	80	0	0	187	31	14.09	-	-	-	C	82837218	T	C	82837218	3	2	538	1	0	0	0	0	1	0	0	0	17235	1464	51	5	8422	5	VCAN	5	82837218	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09		82837218	98078042	24	47475										
SEMA6A	0	genome.wustl.edu	37	chr5	115782654	115782654	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttcgtggggtagctcctcttAtagtcaaccccgtaggaaga	11	10	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	5	115782654	115782654	A	G	SNP	SEMA6A	ENST00000515129	human	ensembl	69_37n	-1	putative	missense	c.1292	p.I431T	1.000	NULL	pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEMA6A	HGNC	ENSG00000092421	102	0	0	75	28	27.18	-	-	-	G	115782654	A	G	115782654	3	3	538	1	0	0	0	0	1	0	0	0	14127	456	16	5	348	5	SEMA6A	5	115782654	Missense_Mutation	SNP	A	TCGA-BH-A0EE-01A-11W-A050-09	32945436	115782654	65132606	25	47476										
PPP2R2B	0	genome.wustl.edu	37	chr5	145969747	145969747	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tcacgcttggtgtttctgtcGaacatcctgaagaagttgtt	10	8	2	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	5	145969747	145969747	G	A	SNP	PPP2R2B	ENST00000394414	human	ensembl	69_37n	-1	known	silent	c.1293	p.F431	0.995	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475	127	0	0	150	23	13.29	-	-	-	A	145969747	G	A	145969747	2	1	538	1	0	0	0	0	0	0	0	1	12462	1049	37	1		1	PPP2R2B	5	145969747	Silent	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	30187093	145969747	34945513	26	47477										
ERGIC1	0	genome.wustl.edu	37	chr5	172359501	172359502	+	Frame_Shift_Ins	INS	-	-	CT													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttatgaggacaagagtggcaINSagcagcggtactcctaccag							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	5	172359501	172359502	-	CT	INS	ERGIC1	ENST00000393784	human	ensembl	69_37n	1	known	frame_shift_ins	c.604_605	p.K202fs	1.000:1.000	pfam_DUF1692	pfam_DUF1692	-	no_errors	ERGIC1	HGNC	ENSG00000113719	61	0	0	52	12	18.75	-	-	-	CT	172359502	-	CT	172359501	7	5	538	1	0	1	1	0	0	0	0	0	5260	131	5	0	634	0	ERGIC1	5	172359501	Frame_Shift_Ins	INS	-	TCGA-BH-A0EE-01A-11W-A050-09	26389754	172359501	8555759	27	47478										
EPHA7	0	genome.wustl.edu	37	chr6	93969111	93969111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aattttaatacaggaggcatCtagctccttggcgaattgat	9	7	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	6	93969111	93969111	C	G	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	missense	c.1885	p.D629H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	122	0	0	163	24	12.83	-	-	-	G	93969111	C	G	93969111	3	3	538	1	0	0	0	0	1	0	0	0	5209	913	32	2	1143	2	EPHA7	6	93969111	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		93969111	77145956	28	47479										
SEMA3C	0	genome.wustl.edu	37	chr7	80434993	80434993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tatgttgatcagttctgaccGcattcctcttggttaaactt	7	9	3	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	7	80434993	80434993	G	A	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	missense	c.674	p.A225V	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	103	0	0	68	24	26.09	-	-	-	A	80434993	G	A	80434993	3	1	538	1	0	0	0	0	1	0	0	0	14114	1087	38	1	1683	1	SEMA3C	7	80434993	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		80434993	78703670	29	47480										
ZNF3	0	genome.wustl.edu	37	chr7	99662422	99662422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aggaggtcctcagaaggtgtCaggaggttccacactcgcca	13	11	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	7	99662422	99662422	C	T	SNP	ZNF3	ENST00000413658	human	ensembl	69_37n	-1	known	missense	c.385	p.D129N	0.000	pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526	121	0	0	115	16	12.21	-	-	-	T	99662422	C	T	99662422	3	4	538	1	0	0	0	0	1	0	0	0	17925	826	29	2	14	2	ZNF3	7	99662422	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	19227429	99662422	59476241	30	47481										
KCND2	0	genome.wustl.edu	37	chr7	119915571	119915571	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tttgtcacactccgagtcttCcgggtcttcaggatctttaa	8	11	5	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	7	119915571	119915571	C	T	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	silent	c.885	p.F295	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	47	0	0	24	4	14.29	-	-	-	T	119915571	C	T	119915571	2	4	538	1	0	0	0	0	0	0	0	1	8073	854	30	2		2	KCND2	7	119915571	Silent	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	20253149	119915571	39223092	31	47482										
WDR67	0	genome.wustl.edu	37	chr8	124141389	124141389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ccagaaacaggagctgcttcGtaaagctgaagaaacaagaa	10	8	0	4			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	8	124141389	124141389	G	A	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.2201	p.R734H	0.922	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	220	0	0	281	78	21.73	-	-	-	A	124141389	G	A	124141389	3	1	538	1	0	0	0	0	1	0	0	0	17415	1145	40	1	2259	1	WDR67	8	124141389	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		124141389	22222633	32	47483										
JRK	0	genome.wustl.edu	37	chr8	143746086	143746086	+	RNA	DEL	T	T	-													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttttggagtcttttctgaacTccacacacaacctctgctgg							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	8	143746086	143746086	T	-	DEL	JRK	ENST00000422119	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	9	0	0	4	2	33.33	-	-	-	-	143746086	T	-	143746086	6	5	538	0	1	1	0	1	0	0	0	0	8018	1538	54	0		0	JRK	8	143746086	RNA	DEL	T	TCGA-BH-A0EE-01A-11W-A050-09	19604697	143746086	2617936	33	47484										
OR13F1	0	genome.wustl.edu	37	chr9	107267045	107267045	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgtctgtgctgccactgtctCtctgtggtaatagcatcatc	9	11	4	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	9	107267045	107267045	C	T	SNP	OR13F1	ENST00000334726	human	ensembl	69_37n	1	known	missense	c.502	p.L168F	0.703	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881	141	0	0	161	88	35.2	-	-	-	T	107267045	C	T	107267045	3	4	538	1	0	0	0	0	1	0	0	0	11014	913	32	2	504	2	OR13F1	9	107267045	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		107267045	33946386	34	47485										
KIF5B	0	genome.wustl.edu	37	chr10	32326302	32326302	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ctcctagagctatgttcattCatatctgcaaggaaattaca	6	9	3	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	10	32326302	32326302	C	T	SNP	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	missense	c.591	p.M197I	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	166	0	0	188	23	10.9	-	-	-	T	32326302	C	T	32326302	3	4	538	1	0	0	0	0	1	0	0	0	8358	826	29	2	2372	2	KIF5B	10	32326302	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		32326302	103208445	35	47486										
GLUD1	0	genome.wustl.edu	37	chr10	88820732	88820732	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ggattccatatactcccatcAgactcaccaacagcaataca	4	14	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	10	88820732	88820732	A	G	SNP	GLUD1	ENST00000277865	human	ensembl	69_37n	-1	known	silent	c.999	p.S333	0.996	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD1	HGNC	ENSG00000148672	345	0	0	217	76	25.85	-	-	-	G	88820732	A	G	88820732	2	3	538	1	0	0	0	0	0	0	0	1	6528	175	7	5		5	GLUD1	10	88820732	Silent	SNP	A	TCGA-BH-A0EE-01A-11W-A050-09	56494430	88820732	46714015	36	47487										
TLL2	0	genome.wustl.edu	37	chr10	98165021	98165021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cttttctccagtaaccatccCggacctccacgtaatcatac	4	16	2	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	10	98165021	98165021	C	T	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.1235	p.R412Q	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	165	0	0	90	23	20.18	-	-	-	T	98165021	C	T	98165021	3	4	538	1	0	0	0	0	1	0	0	0	16041	652	23	1	1860	1	TLL2	10	98165021	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	9344289	98165021	37369726	37	47488										
SMC3	0	genome.wustl.edu	37	chr10	112340713	112340713	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	agagattaaagctattaagaGaagtagctggtactagagtg	12	3	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	10	112340713	112340713	G	A	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.481	p.E161K	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	122	0	0	60	24	28.57	-	-	-	A	112340713	G	A	112340713	3	1	538	1	0	0	0	0	1	0	0	0	14873	943	33	2	511	2	SMC3	10	112340713	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	14175692	112340713	23194034	38	47489										
NUP98	0	genome.wustl.edu	37	chr11	3697418	3697418	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cccaacagccagttctcgcaGataggactgggtaaggctgc	12	12	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	11	3697418	3697418	G	A	SNP	NUP98	ENST00000429801	human	ensembl	69_37n	-1	novel	missense	c.2231	p.S744F	1.000	NULL	pfam_Nup96	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP98	HGNC	ENSG00000110713	48	0	0	40	12	23.08	-	-	-	A	3697418	G	A	3697418	3	1	538	1	0	0	0	0	1	0	0	0	10846	933	33	2	32	2	NUP98	11	3697418	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		3697418	131309098	39	47490										
LRTOMT	0	genome.wustl.edu	37	chr11	71804648	71804648	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aataacaatgttctcaatgaTctgagagacttcaaccaggt	7	8	3	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	11	71804648	71804648	T	A	SNP	LRTOMT	ENST00000427369	human	ensembl	69_37n	1	known	missense	c.189	p.D63E	0.984	NULL	NULL	-	no_errors	LRTOMT	HGNC	ENSG00000184154	111	0	0	107	21	16.41	-	-	-	A	71804648	T	A	71804648	3	1	538	1	0	0	0	0	1	0	0	0	9112	1432	50	5	195	5	LRTOMT	11	71804648	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09	68107230	71804648	63201868	40	47491										
ARHGEF12	0	genome.wustl.edu	37	chr11	120347958	120347958	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ctaatctgtcggatggctgcAtcagtgaaggagcaatccac	11	10	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	11	120347958	120347958	A	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	silent	c.3339	p.A1113	0.290	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	213	0	0	165	25	13.16	-	-	-	T	120347958	A	T	120347958	2	4	538	1	0	0	0	0	0	0	0	1	899	204	8	5		5	ARHGEF12	11	120347958	Silent	SNP	A	TCGA-BH-A0EE-01A-11W-A050-09	48543310	120347958	14658558	41	47492										
FOXRED1	0	genome.wustl.edu	37	chr11	126147521	126147521	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aggttccagaccatcgacctGagccccttcctctttacccg	7	17	1	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	11	126147521	126147521	G	T	SNP	FOXRED1	ENST00000263578	human	ensembl	69_37n	1	known	silent	c.1398	p.L466	0.995	NULL	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074	24	0	0	19	4	17.39	-	-	-	T	126147521	G	T	126147521	2	4	538	1	0	0	0	0	0	0	0	1	6081	1277	45	2		2	FOXRED1	11	126147521	Silent	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	5799563	126147521	8858995	42	47493										
GRIN2B	0	genome.wustl.edu	37	chr12	13722841	13722841	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tttggatggcaatgccatagCcagtggaagcaaagaccttc	11	9	0	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	13722841	13722841	C	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.2282	p.G761V	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	65	0	0	49	12	19.67	-	-	-	A	13722841	C	A	13722841	3	1	538	1	0	0	0	0	1	0	0	0	6831	739	26	4	2184	4	GRIN2B	12	13722841	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		13722841	120129054	43	47494										
IPO8	0	genome.wustl.edu	37	chr12	30814170	30814170	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttcaacttcttcatattcatCactttgaagaactttgccaa	3	10	5	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	30814170	30814170	C	G	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.1786	p.D596H	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	223	0	0	136	34	19.88	-	-	-	G	30814170	C	G	30814170	3	3	538	1	0	0	0	0	1	0	0	0	7852	826	29	2	1367	2	IPO8	12	30814170	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	17091329	30814170	103037725	44	47495			1	85		3	3	4952	C		7.135255e-05
IPO8	0	genome.wustl.edu	37	chr12	30815380	30815380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tctaacaatgtgcaacagttCctgcataataggcctcacat	6	11	2	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	30815380	30815380	C	T	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.1636	p.E546K	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	182	0	0	126	50	28.41	-	-	-	T	30815380	C	T	30815380	3	4	538	1	0	0	0	0	1	0	0	0	7852	864	30	2	1521	2	IPO8	12	30815380	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	1210	30815380	103036515	45	47496			1	85		3	3	4952	C		7.135255e-05
IPO8	0	genome.wustl.edu	37	chr12	30819121	30819121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgaaatacctcttttcttttCtttgcagcagtatataagag	6	7	3	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	30819121	30819121	C	G	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	missense	c.1209	p.K403N	1.000	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	81	0	0	41	25	37.88	-	-	-	G	30819121	C	G	30819121	3	3	538	1	0	0	0	0	1	0	0	0	7852	912	32	2	1964	2	IPO8	12	30819121	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	3741	30819121	103032774	46	47497			1	85		3	3	4952	C		7.135255e-05
SLC38A4	0	genome.wustl.edu	37	chr12	47173627	47173627	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	acaaatatgatgaggtagttGccattgaggtaccattctct	9	7	1	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	47173627	47173627	G	T	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	silent	c.594	p.G198	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	127	0	0	93	15	13.89	-	-	-	T	47173627	G	T	47173627	2	4	538	1	0	0	0	0	0	0	0	1	14695	1306	46	4		4	SLC38A4	12	47173627	Silent	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	16354506	47173627	86678268	47	47498										
CCT2	0	genome.wustl.edu	37	chr12	69981336	69981336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cctctcttatggtaaccaatGatggtgccactattctaaaa	6	10	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	69981336	69981336	G	C	SNP	CCT2	ENST00000299300	human	ensembl	69_37n	1	known	missense	c.196	p.D66H	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	84	0	0	55	13	19.12	-	-	-	C	69981336	G	C	69981336	3	2	538	1	0	0	0	0	1	0	0	0	2982	1290	45	2	210	2	CCT2	12	69981336	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	22807709	69981336	63870559	48	47499										
SBNO1	0	genome.wustl.edu	37	chr12	123789180	123789180	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	atttctaatttgagctgcttCccagtatttggtcgataaac	7	8	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	12	123789180	123789180	C	A	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	silent	c.3717	p.G1239	1.000	superfamily_Prismane-like	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	112	0	0	63	12	16	-	-	-	A	123789180	C	A	123789180	2	1	538	1	0	0	0	0	0	0	0	1	13949	842	30	2		2	SBNO1	12	123789180	Silent	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	53807844	123789180	10062715	49	47500										
IRF9	0	genome.wustl.edu	37	chr14	24631474	24631474	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ctaagaccatgttccggattCcctggaaacatgcaggcaag	10	11	0	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	14	24631474	24631474	C	A	SNP	IRF9	ENST00000396864	human	ensembl	69_37n	1	known	missense	c.121	p.P41T	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	199	0	0	165	20	10.81	-	-	-	A	24631474	C	A	24631474	3	1	538	1	0	0	0	0	1	0	0	0	7891	855	30	2	123	2	IRF9	14	24631474	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		24631474	82718066	50	47501										
EML5	0	genome.wustl.edu	37	chr14	89178714	89178714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tccatctactgaatttatatCgttgatatctgaatacttgg	6	7	2	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	14	89178714	89178714	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.1558	p.D520N	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	114	0	0	114	56	32.75	-	-	-	T	89178714	C	T	89178714	3	4	538	1	0	0	0	0	1	0	0	0	5137	884	31	1	4511	1	EML5	14	89178714	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	64547240	89178714	18170826	51	47502										
MARK3	0	genome.wustl.edu	37	chr14	103969315	103969315	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aaaaccactagttcaatggaTcccggggacatgatgcggga	12	9	1	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	14	103969315	103969315	T	G	SNP	MARK3	ENST00000429436	human	ensembl	69_37n	1	known	missense	c.2013	p.D671E	0.021	superfamily_Kinase-assoc_KA1	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK3	HGNC	ENSG00000075413	46	0	0	55	35	38.89	-	-	-	G	103969315	T	G	103969315	3	3	538	1	0	0	0	0	1	0	0	0	9385	1432	50	5	2083	5	MARK3	14	103969315	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09	14790601	103969315	3380225	52	47503										
CORO7	0	genome.wustl.edu	37	chr16	4412087	4412088	+	Frame_Shift_Ins	INS	-	-	C													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ccaggtgtggtgaggttgagINSccccttgaggttggtgatgt							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	16	4412087	4412088	-	C	INS	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1477_1476	p.L492fs	1.000:0.975	NULL	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	18	0	0	14	5	26.32	-	-	-	C	4412088	-	C	4412087	7	5	538	1	0	1	1	0	0	0	0	0	3789	971	34	0	1352	0	CORO7	16	4412087	Frame_Shift_Ins	INS	-	TCGA-BH-A0EE-01A-11W-A050-09		4412087	85942666	53	47504										
CNOT1	0	genome.wustl.edu	37	chr16	58577381	58577381	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	acaatctaaaatgatggaagAcatcaaacaaatatggtgat	7	5	2	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	16	58577381	58577381	A	C	SNP	CNOT1	ENST00000441024	human	ensembl	69_37n	-1	known	missense	c.4564	p.S1522A	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	51	0	0	48	10	17.24	-	-	-	C	58577381	A	C	58577381	3	2	538	1	0	0	0	0	1	0	0	0	3647	275	10	5	2864	5	CNOT1	16	58577381	Missense_Mutation	SNP	A	TCGA-BH-A0EE-01A-11W-A050-09	54165294	58577381	31777372	54	47505										
GAS8	0	genome.wustl.edu	37	chr16	90097863	90097863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	agctgcggaacaaagaccggGagatggaagaagccgaggag	17	7	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	16	90097863	90097863	G	A	SNP	GAS8	ENST00000268699	human	ensembl	69_37n	1	known	missense	c.247	p.E83K	1.000	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013	227	0	0	165	31	15.74	-	-	-	A	90097863	G	A	90097863	3	1	538	1	0	0	0	0	1	0	0	0	6301	1175	41	2	257	2	GAS8	16	90097863	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	31520482	90097863	256890	55	47506										
EFNB3	0	genome.wustl.edu	37	chr17	7612855	7612856	+	Frame_Shift_Ins	INS	-	-	C													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgtatatcgtgcaggatgggINScccccccagagccctccaaa							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	17	7612855	7612856	-	C	INS	EFNB3	ENST00000226091	human	ensembl	69_37n	1	known	frame_shift_ins	c.984_985	p.Q330fs	1.000:1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947	42	0	0	27	3	10	-	-	-	C	7612856	-	C	7612855	7	5	538	1	0	1	1	0	0	0	0	0	4992	1190	42	0	1002	0	EFNB3	17	7612855	Frame_Shift_Ins	INS	-	TCGA-BH-A0EE-01A-11W-A050-09		7612855	73582355	56	47507										
COX10	0	genome.wustl.edu	37	chr17	14110529	14110529	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cgcagggccccctcccagctGagagcactgggacgcccacc	12	19	0	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	17	14110529	14110529	G	T	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	nonstop	c.1331	p.*444L	0.009	NULL	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	22	0	0	2	5	71.43	-	-	-	T	14110529	G	T	14110529	4	4	538	1	0	0	0	0	0	0	0	0	3792	1285	45	2	1357	2	COX10	17	14110529	Nonstop_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	6497674	14110529	67084681	57	47508										
RGS9	0	genome.wustl.edu	37	chr17	63221447	63221447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cccctcctaaggcccgcatgGctctgtccttcagcaggttt	9	16	2	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	17	63221447	63221447	G	A	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	missense	c.1735	p.A579T	0.857	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	76	0	0	37	45	54.88	-	-	-	A	63221447	G	A	63221447	3	1	538	1	0	0	0	0	1	0	0	0	13397	1203	42	4	1860	4	RGS9	17	63221447	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	49110918	63221447	17973763	58	47509										
FN3KRP	0	genome.wustl.edu	37	chr17	80676816	80676816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgaaggtgagatggcaagttTaactgccatcctgaaaacaa	10	7	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	17	80676816	80676816	T	C	SNP	FN3KRP	ENST00000269373	human	ensembl	69_37n	1	known	missense	c.176	p.L59S	0.861	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	64	0	0	45	7	13.46	-	-	-	C	80676816	T	C	80676816	3	2	538	1	0	0	0	0	1	0	0	0	6010	1764	61	5	182	5	FN3KRP	17	80676816	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09	17455369	80676816	518394	59	47510										
NOL4	0	genome.wustl.edu	37	chr18	31599298	31599298	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ataccttgcttccattttctCtcgcctctcgttccatcttg	4	15	3	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	18	31599298	31599298	C	G	SNP	NOL4	ENST00000261592	human	ensembl	69_37n	-1	known	missense	c.1040	p.R347T	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746	84	0	0	103	33	24.26	-	-	-	G	31599298	C	G	31599298	3	3	538	1	0	0	0	0	1	0	0	0	10596	913	32	2	900	2	NOL4	18	31599298	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		31599298	46477950	60	47511										
HMHA1	0	genome.wustl.edu	37	chr19	1084279	1084279	+	Frame_Shift_Del	DEL	C	C	-													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ctgaggtagtcgtccaggtgCcgtacctggaggcgggcgag							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	19	1084279	1084279	C	-	DEL	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	frame_shift_del	c.2998	p.P1000fs	0.069	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	41	0	0	42	5	10.42	-	-	-	-	1084279	C	-	1084279	7	5	538	1	0	1	0	1	0	0	0	0	7291	739	26	0	3084	0	HMHA1	19	1084279	Frame_Shift_Del	DEL	C	TCGA-BH-A0EE-01A-11W-A050-09		1084279	58044704	61	47512										
DOT1L	0	genome.wustl.edu	37	chr19	2202727	2202727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	ttgtgaataattttgcctttGgtcctgaggtggatcaccag	11	7	1	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	19	2202727	2202727	G	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.736	p.G246S	1.000	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	149	0	0	68	31	31.31	-	-	-	A	2202727	G	A	2202727	3	1	538	1	0	0	0	0	1	0	0	0	4744	1348	47	4	770	4	DOT1L	19	2202727	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	1118448	2202727	56926256	62	47513										
RASAL3	0	genome.wustl.edu	37	chr19	15565183	15565183	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aggccatacctggtcaagctCagcaaaaattgtacagagct	9	10	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	19	15565183	15565183	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.2149	p.E717K	0.997	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	55	0	0	37	8	17.78	-	-	-	T	15565183	C	T	15565183	3	4	538	1	0	0	0	0	1	0	0	0	13148	835	29	2	910	2	RASAL3	19	15565183	Missense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09	13362456	15565183	43563800	63	47514										
NLRP2	0	genome.wustl.edu	37	chr19	55501561	55501561	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgctttctgcagaggttgtcGtaagtctctcctctcttaca	8	11	3	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	19	55501561	55501561	G	A	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	splice_site	c.2537+1	e8+1	0.862	-	-	-	no_errors	NLRP2	HGNC	ENSG00000022556	56	0	0	81	14	14.74	-	-	-	A	55501561	G	A	55501561	5	1	538	1	0	0	0	0	0	0	1	0	10549	1159	40	1	2568	1	NLRP2	19	55501561	Splice_Site	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	39936378	55501561	3627422	64	47515										
CDC25B	0	genome.wustl.edu	37	chr20	3782704	3782704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cgtgcagaataagcggaggcGgagcgtgacccctcctgagg	16	11	0	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	20	3782704	3782704	G	A	SNP	CDC25B	ENST00000245960	human	ensembl	69_37n	1	known	missense	c.1055	p.R352Q	0.998	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224	55	0	0	61	11	15.28	-	-	-	A	3782704	G	A	3782704	3	1	538	1	0	0	0	0	1	0	0	0	3092	1116	39	1	1093	1	CDC25B	20	3782704	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		3782704	59242816	65	47516										
DSCR6	0	genome.wustl.edu	37	chr21	38390475	38390475	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	cgctccctcaaggtgtctccTcaaggggtggcaagtgctcc	12	14	3	0			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	21	38390475	38390475	T	G	SNP	DSCR6	ENST00000329553	human	ensembl	69_37n	1	known	missense	c.541	p.S181A	0.000	NULL	NULL	-	no_errors	DSCR6	HGNC	ENSG00000183145	28	0	0	42	13	23.21	-	-	-	G	38390475	T	G	38390475	3	3	538	1	0	0	0	0	1	0	0	0	4808	1551	54	5	555	5	DSCR6	21	38390475	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09		38390475	9739420	66	47517										
UPB1	0	genome.wustl.edu	37	chr22	24898389	24898389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tccttcagttttcccacatcGttctgaatccattcgctcct	4	15	2	1			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	22	24898389	24898389	G	A	SNP	UPB1	ENST00000382760	human	ensembl	69_37n	1	putative	missense	c.449	p.R150H	0.000	NULL	superfamily_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024	47	0	0	21	9	29.03	-	-	-	A	24898389	G	A	24898389	3	1	538	1	0	0	0	0	1	0	0	0	17099	1160	40	1		1	UPB1	22	24898389	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09		24898389	26406177	67	47518										
FBLN1	0	genome.wustl.edu	37	chr22	45996240	45996241	+	Frame_Shift_Del	DEL	CT	CT	-													0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	catttcatgccgtcctgaagCtggagatgaactatgtggtc							TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	22	45996240	45996241	CT	-	DEL	FBLN1	ENST00000327858	human	ensembl	69_37n	1	known	frame_shift_del	c.2026_2027	p.L676fs	1.000:1.000	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942	51	0	0	38	19	33.33	-	-	-	-	45996241	CT	-	45996240	7	5	538	1	0	1	0	1	0	0	0	0	5744	796	28	0	2572	0	FBLN1	22	45996240	Frame_Shift_Del	DEL	CT	TCGA-BH-A0EE-01A-11W-A050-09	21097851	45996240	5308326	68	47519										
CNKSR2	0	genome.wustl.edu	37	chrX	21458841	21458841	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgctgctgtgacagactattCagttacaagaaataatgtca	8	7	2	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	21458841	21458841	C	G	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	nonsense	c.461	p.S154*	1.000	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	195	0	0	176	22	11.06	-	-	-	G	21458841	C	G	21458841	4	3	538	1	0	0	0	0	0	1	0	0	3637	838	29	2	475	2	CNKSR2	23	21458841	Nonsense_Mutation	SNP	C	TCGA-BH-A0EE-01A-11W-A050-09		21458841	133811719	69	47520										
PCYT1B	0	genome.wustl.edu	37	chrX	24580504	24580504	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	aggttttgagtggaagccatGagaaggtgggcgatggggag	20	3	0	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	24580504	24580504	G	A	SNP	PCYT1B	ENST00000379144	human	ensembl	69_37n	-1	known	missense	c.1016	p.S339L	0.995	NULL	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1B	HGNC	ENSG00000102230	195	0	0	123	23	15.75	-	-	-	A	24580504	G	A	24580504	3	1	538	1	0	0	0	0	1	0	0	0	11684	1294	45	2	134	2	PCYT1B	23	24580504	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	3121663	24580504	130690056	70	47521										
HEPH	0	genome.wustl.edu	37	chrX	65408292	65408292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gtagatgagaacctcagctgGcatctcaatgagaacattgc	10	9	2	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	65408292	65408292	G	T	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.879	p.W293C	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	208	0	0	208	57	21.51	-	-	-	T	65408292	G	T	65408292	3	4	538	1	0	0	0	0	1	0	0	0	7105	1212	42	4	897	4	HEPH	23	65408292	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	40827788	65408292	89862268	71	47522										
CXorf26	0	genome.wustl.edu	37	chrX	75397565	75397565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gaaaggagtcaacaatggagGagaaaaaagagctgacagtg	14	4	1	3			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	75397565	75397565	G	A	SNP	CXorf26	ENST00000373358	human	ensembl	69_37n	1	known	missense	c.524	p.G175E	0.000	NULL	pfam_Put_polysacc_synth	-	no_errors	CXorf26	HGNC	ENSG00000102390	523	0	0	441	83	15.84	-	-	-	A	75397565	G	A	75397565	3	1	538	1	0	0	0	0	1	0	0	0	4135	1174	41	2	546	2	CXorf26	23	75397565	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	9989273	75397565	79872995	72	47523										
RPS6KA6	0	genome.wustl.edu	37	chrX	83361977	83361977	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	gattttatattcttctgcaaTagaagttgcaacaaagctga	7	6	2	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	83361977	83361977	T	C	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	missense	c.1183	p.I395V	0.137	pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	140	0	0	116	26	18.31	-	-	-	C	83361977	T	C	83361977	3	2	538	1	0	0	0	0	1	0	0	0	13741	1406	49	5	1090	5	RPS6KA6	23	83361977	Missense_Mutation	SNP	T	TCGA-BH-A0EE-01A-11W-A050-09	7964412	83361977	71908583	73	47524										
ZCCHC12	0	genome.wustl.edu	37	chrX	117959442	117959442	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	tgccagattggaatatgtctGaggaggaaaagctcaagcgc	13	7	2	2			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	117959442	117959442	G	A	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	0.996	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	199	1	0.5	202	28	12.17	-	-	-	A	117959442	G	A	117959442	3	1	538	1	0	0	0	0	1	0	0	0	17677	1291	45	2	237	2	ZCCHC12	23	117959442	Missense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	34597465	117959442	37311118	74	47525										
CUL4B	0	genome.wustl.edu	37	chrX	119679331	119679331	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.253333333333333	19	0.000602814775233092	2.52232544201379	3.97055057618438	2.07981220657277	0.230733178259674	0.835766845696152	11	agcattgaattctgaagaacGtaagttctatccagaaacaa	7	7	2	4			TCGA-BH-A0EE-01A-11W-A050-09	TCGA-BH-A0EE-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68d16e6a-20a5-428f-89d0-a8a0deda80cc	f4528a3f-aa6b-4964-80fd-afa642427616	X	119679331	119679331	G	T	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	nonsense	c.942	p.Y314*	0.809	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	115	1	0.86	142	44	23.66	-	-	-	T	119679331	G	T	119679331	4	4	538	1	0	0	0	0	0	1	0	0	4089	1140	40	3	1863	3	CUL4B	23	119679331	Nonsense_Mutation	SNP	G	TCGA-BH-A0EE-01A-11W-A050-09	1719889	119679331	35591229	75	47526										
ZNF496	0	genome.wustl.edu	37	chr1	247473058	247473058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcctgcaactctggaacgcGtggctcattctcctctccct	7	16	4	0			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	1	247473058	247473058	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	missense	c.943	p.R315C	0.001	pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	92	0	0	84	15	15.15	-	-	-	A	247473058	G	A	247473058	3	1	539	1	0	0	0	0	1	0	0	0	18041	1145	40	1	940	1	ZNF496	1	247473058	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09		247473058	1777563	1	47527										
TNFRSF10A	0	genome.wustl.edu	37	chr8	23049438	23049439	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	ctctgaccacatcgatctcaINStttttcgtgaggtccagctg							TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	8	23049438	23049439	-	T	INS	TNFRSF10A	ENST00000221132	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1176_1175	p.N392fs	0.505:0.425	pirsf_TNFR_10,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pirsf_TNFR_10,pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_10,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10A	HGNC	ENSG00000104689	151	0	0	55	50	47.62	-	-	-	T	23049439	-	T	23049438	7	5	539	1	0	1	1	0	0	0	0	0	16375	214	8	0	234	0	TNFRSF10A	8	23049438	Frame_Shift_Ins	INS	-	TCGA-BH-A0EI-01A-11D-A10Y-09		23049438	123314584	2	47528										
LINGO2	0	genome.wustl.edu	37	chr9	27950338	27950338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttagacgattgccttttaggCggagggaacgcaggttaaag	14	6	0	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	9	27950338	27950338	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.332	p.R111H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	151	0	0	119	55	31.61	-	-	-	T	27950338	C	T	27950338	3	4	539	1	0	0	0	0	1	0	0	0	8871	768	27	1	1492	1	LINGO2	9	27950338	Missense_Mutation	SNP	C	TCGA-BH-A0EI-01A-11D-A10Y-09		27950338	113263093	3	47529										
SIRT3	0	genome.wustl.edu	37	chr11	224173	224173	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagcggctccccaaagaacaCaatgtcgggcttcacaacgc	9	15	1	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	224173	224173	C	A	SNP	SIRT3	ENST00000382743	human	ensembl	69_37n	-1	known	missense	c.874	p.V292L	1.000	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	42	0	0	51	19	27.14	-	-	-	A	224173	C	A	224173	3	1	539	1	0	0	0	0	1	0	0	0	14428	478	17	4	337	4	SIRT3	11	224173	Missense_Mutation	SNP	C	TCGA-BH-A0EI-01A-11D-A10Y-09		224173	134782343	4	47530										
ZNF143	0	genome.wustl.edu	37	chr11	9494303	9494303	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggttctactgcttacatacaAcacaattctaaaggtatgtg	7	8	2	0			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	9494303	9494303	A	G	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	1	known	silent	c.192	p.Q64	0.759	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	128	0	0	124	24	16.22	-	-	-	G	9494303	A	G	9494303	2	3	539	1	0	0	0	0	0	0	0	1	17828	40	2	5		5	ZNF143	11	9494303	Silent	SNP	A	TCGA-BH-A0EI-01A-11D-A10Y-09	9270130	9494303	125512213	5	47531										
SF3B2	0	genome.wustl.edu	37	chr11	65819873	65819873	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagatggcgacggagcatccCgagcctcccaaagcagaatt	11	12	0	2			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	65819873	65819873	C	T	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	silent	c.18	p.P6	0.294	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	22	0	0	21	13	37.14	-	-	-	T	65819873	C	T	65819873	2	4	539	1	0	0	0	0	0	0	0	1	14239	639	23	1		1	SF3B2	11	65819873	Silent	SNP	C	TCGA-BH-A0EI-01A-11D-A10Y-09	56325570	65819873	69186643	6	47532										
SCFD1	0	genome.wustl.edu	37	chr14	31118737	31118737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttattgttaaaataggtgCtgttcctataatcagatgtt	7	4	1	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	31118737	31118737	C	T	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	1	known	missense	c.617	p.A206V	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	131	0	0	67	28	29.47	-	-	-	T	31118737	C	T	31118737	3	4	539	1	0	0	0	0	1	0	0	0	13976	797	28	4	647	4	SCFD1	14	31118737	Missense_Mutation	SNP	C	TCGA-BH-A0EI-01A-11D-A10Y-09		31118737	76230803	7	47533										
SNAPC1	0	genome.wustl.edu	37	chr14	62229257	62229257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agacggacagtgtacgcttcGaggacttcacggagctctgg	14	10	2	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	62229257	62229257	G	A	SNP	SNAPC1	ENST00000216294	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	1.000	pfam_SNAPc_SNAP43	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	79	0	0	82	31	27.43	-	-	-	A	62229257	G	A	62229257	3	1	539	1	0	0	0	0	1	0	0	0	14923	1059	37	1	81	1	SNAPC1	14	62229257	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09	31110520	62229257	45120283	8	47534										
SERPINA9	0	genome.wustl.edu	37	chr14	94933670	94933670	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acctgctcgcccaccaggaaTgggaagttctttcttgtata	9	11	2	0			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	94933670	94933670	T	A	SNP	SERPINA9	ENST00000337425	human	ensembl	69_37n	-1	known	silent	c.732	p.P244	0.014	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA9	HGNC	ENSG00000170054	98	0	0	67	31	31.63	-	-	-	A	94933670	T	A	94933670	2	1	539	1	0	0	0	0	0	0	0	1	14183	1451	51	5		5	SERPINA9	14	94933670	Silent	SNP	T	TCGA-BH-A0EI-01A-11D-A10Y-09	32704413	94933670	12415870	9	47535										
MAP2K4	0	genome.wustl.edu	37	chr17	12011150	12011150	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actcatgtctacctcgtttgAtaagttttacaaatatgtat	5	7	2	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	12011150	12011150	A	G	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.590	p.D197G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	322	0	0	85	80	48.48	-	-	-	G	12011150	A	G	12011150	3	3	539	1	0	0	0	0	1	0	0	0	9310	333	12	5	575	5	MAP2K4	17	12011150	Missense_Mutation	SNP	A	TCGA-BH-A0EI-01A-11D-A10Y-09		12011150	69184060	10	47536										
FLII	0	genome.wustl.edu	37	chr17	18157896	18157896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtctgcaggtgcaccaggcGgcgcatctgcgggggcaggc	18	13	2	0			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	18157896	18157896	G	A	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.514	p.R172C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	44	0	0	20	16	44.44	-	-	-	A	18157896	G	A	18157896	3	1	539	1	0	0	0	0	1	0	0	0	5971	1116	39	1	3395	1	FLII	17	18157896	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09	6146746	18157896	63037314	11	47537										
SIGLEC15	0	genome.wustl.edu	37	chr18	43422104	43422104	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagtccaattatgaaaatttGagccagatgaacccccggag	10	9	0	4			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	18	43422104	43422104	G	T	SNP	SIGLEC15	ENST00000389474	human	ensembl	69_37n	1	known	missense	c.939	p.L313F	0.960	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC15	HGNC	ENSG00000197046	81	0	0	67	36	34.95	-	-	-	T	43422104	G	T	43422104	3	4	539	1	0	0	0	0	1	0	0	0	14399	1281	45	2	961	2	SIGLEC15	18	43422104	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09		43422104	34655144	12	47538										
ATRN	0	genome.wustl.edu	37	chr20	3559378	3559378	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccagaagaaggtagaatttGtccttaagcagctgcgaata	10	8	0	3			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	3559378	3559378	G	C	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.2503	p.V835L	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	118	0	0	160	32	16.67	-	-	-	C	3559378	G	C	3559378	3	2	539	1	0	0	0	0	1	0	0	0	1210	1377	48	4	2561	4	ATRN	20	3559378	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09		3559378	59466142	13	47539										
PLCG1	0	genome.wustl.edu	37	chr20	39802876	39802876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaaggctcctttgaatcccGctaccagcagccgtttgagg	12	12	0	2			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	39802876	39802876	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.3758	p.R1253H	1.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	35	0	0	53	24	30.77	-	-	-	A	39802876	G	A	39802876	3	1	539	1	0	0	0	0	1	0	0	0	12109	1087	38	1	3880	1	PLCG1	20	39802876	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09	36243498	39802876	23222644	14	47540										
MAGEE2	0	genome.wustl.edu	37	chrX	75004148	75004148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacaagaactcaaactcaaGgggattagtgccatacaccg	8	12	2	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	75004148	75004148	G	A	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.739	p.L247F	0.018	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	69	0	0	87	27	23.68	-	-	-	A	75004148	G	A	75004148	3	1	539	1	0	0	0	0	1	0	0	0	9257	1000	35	4	836	4	MAGEE2	23	75004148	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09		75004148	80266412	15	47541										
KLHL4	0	genome.wustl.edu	37	chrX	86887332	86887332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ataagctctatgtcgtgggaGgaagagacggtttaaaaact	12	5	1	1			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	86887332	86887332	G	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.1447	p.G483R	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	244	0	0	211	89	29.57	-	-	-	A	86887332	G	A	86887332	3	1	539	1	0	0	0	0	1	0	0	0	8444	1001	35	4	1473	4	KLHL4	23	86887332	Missense_Mutation	SNP	G	TCGA-BH-A0EI-01A-11D-A10Y-09	11883184	86887332	68383228	16	47542										
AGMAT	0	genome.wustl.edu	37	chr1	15905362	15905362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tcggtctgtcacctggctccGgttgtatctgtagggatcca	12	11	3	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	15905362	15905362	G	A	SNP	AGMAT	ENST00000375826	human	ensembl	69_37n	-1	known	missense	c.712	p.R238W	0.767	pfam_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771	58	0	0	12	8	40	-	-	-	A	15905362	G	A	15905362	3	1	540	1	0	0	0	0	1	0	0	0	385	1115	39	1	362	1	AGMAT	1	15905362	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09		15905362	233345259	1	47543										
EIF2C1	0	genome.wustl.edu	37	chr1	36358236	36358236	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	cctgtgtatgatggaaagaaGaacatttacactgtcacagc	9	8	1	3			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	36358236	36358236	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	silent	c.288	p.K96	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	155	0	0	101	107	51.44	-	-	-	A	36358236	G	A	36358236	2	1	540	1	0	0	0	0	0	0	0	1	5040	933	33	2		2	EIF2C1	1	36358236	Silent	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	20452874	36358236	212892385	2	47544										
IL23R	0	genome.wustl.edu	37	chr1	67648572	67648572	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tcatttatgaatattcaggcAacatgacttgcacctggaat	7	8	2	2			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	67648572	67648572	A	C	SNP	IL23R	ENST00000347310	human	ensembl	69_37n	1	known	missense	c.421	p.N141H	0.985	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594	280	0	0	307	102	24.94	-	-	-	C	67648572	A	C	67648572	3	2	540	1	0	0	0	0	1	0	0	0	7730	130	5	5	431	5	IL23R	1	67648572	Missense_Mutation	SNP	A	TCGA-BH-A0GY-01A-11W-A071-09	31290336	67648572	181602049	3	47545										
LRRC8D	0	genome.wustl.edu	37	chr1	90400639	90400639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tttaaagtccaataacattcGcacaattgaggaaatcatca	5	8	2	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	90400639	90400639	G	A	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	missense	c.2012	p.R671H	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	117	0	0	162	48	22.86	-	-	-	A	90400639	G	A	90400639	3	1	540	1	0	0	0	0	1	0	0	0	9090	1087	38	1	2014	1	LRRC8D	1	90400639	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	22752067	90400639	158849982	4	47546										
AGL	0	genome.wustl.edu	37	chr1	100376361	100376361	+	Frame_Shift_Del	DEL	A	A	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	atggatggataaaatgggagAaagtgacagagctagaaaca							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	100376361	100376361	A	-	DEL	AGL	ENST00000294724	human	ensembl	69_37n	1	known	frame_shift_del	c.3794	p.S1266fs	1.000	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	79	0	0	117	99	44.8	-	-	-	-	100376361	A	-	100376361	7	5	540	1	0	1	0	1	0	0	0	0	384	246	9	0	3969	0	AGL	1	100376361	Frame_Shift_Del	DEL	A	TCGA-BH-A0GY-01A-11W-A071-09	9975722	100376361	148874260	5	47547										
FBXO41	0	genome.wustl.edu	37	chr2	73491166	73491166	+	Frame_Shift_Del	DEL	C	C	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ggcctgggtgcaccactgagCcagcattgccaggaactgtg							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	73491166	73491166	C	-	DEL	FBXO41	ENST00000295133	human	ensembl	69_37n	-1	known	frame_shift_del	c.2005	p.A669fs	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO41	HGNC	ENSG00000163013	29	0	0	4	2	33.33	-	-	-	-	73491166	C	-	73491166	7	5	540	1	0	1	0	1	0	0	0	0	5796	739	26	0	833	0	FBXO41	2	73491166	Frame_Shift_Del	DEL	C	TCGA-BH-A0GY-01A-11W-A071-09		73491166	169708207	6	47548										
NEB	0	genome.wustl.edu	37	chr2	152362016	152362017	+	Frame_Shift_Del	DEL	CT	CT	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ctaatgtgcttctgcgtctcCttcacacgtttcacttcagg							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	152362016	152362017	CT	-	DEL	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	frame_shift_del	c.23718_23717	p.K7906fs	1.000:1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	223	0	0	221	42	15.38	-	-	-	-	152362017	CT	-	152362016	7	5	540	1	0	1	0	1	0	0	0	0	10374	680	24	0	1931	0	NEB	2	152362016	Frame_Shift_Del	DEL	CT	TCGA-BH-A0GY-01A-11W-A071-09	78870850	152362016	90837357	7	47549										
TTN	0	genome.wustl.edu	37	chr2	179639817	179639817	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	acctccataccatctttataCcatttcactttgacaaatgg	3	12	2	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	179639817	179639817	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6621	p.W2207C	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	157	0	0	184	28	13.21	-	-	-	G	179639817	C	G	179639817	3	3	540	1	0	0	0	0	1	0	0	0	16832	508	18	4	104703	4	TTN	2	179639817	Missense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09	27277801	179639817	63559556	8	47550										
PLXNA1	0	genome.wustl.edu	37	chr3	126735390	126735391	+	Frame_Shift_Ins	INS	-	-	C													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gtgagatccggtgcctgacaINSccccccgggcagagccctgg							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	3	126735390	126735391	-	C	INS	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	frame_shift_ins	c.3045_3046	p.G1017fs	0.554:0.981	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	32	0	0	12	3	20	-	-	-	C	126735391	-	C	126735390	7	5	540	1	0	1	1	0	0	0	0	0	12193	146	6	0	3103	0	PLXNA1	3	126735390	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09		126735390	71287040	9	47551										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	157	0	0	176	351	66.6	-	-	-	G	178952085	A	G	178952085	3	3	540	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0GY-01A-11W-A071-09	52216695	178952085	19070345	10	47552										
RELL1	0	genome.wustl.edu	37	chr4	37640083	37640083	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	actcacctttcaggatcataCaggctgttatctgctaccat	6	12	4	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	37640083	37640083	C	A	SNP	RELL1	ENST00000314117	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	0.013	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL1	HGNC	ENSG00000181826	138	0	0	95	70	42.42	-	-	-	A	37640083	C	A	37640083	2	1	540	1	0	0	0	0	0	0	0	1	13301	465	17	4		4	RELL1	4	37640083	Silent	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		37640083	153514193	11	47553										
MAML3	0	genome.wustl.edu	37	chr4	140811230	140811230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	agagctgggcacagccacagGccctgacgctgaaccggcca	13	15	0	3			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	140811230	140811230	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.1360	p.P454S	0.982	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	155	0	0	67	30	30.61	-	-	-	A	140811230	G	A	140811230	3	1	540	1	0	0	0	0	1	0	0	0	9278	1203	42	4	2064	4	MAML3	4	140811230	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	103171147	140811230	50343046	12	47554										
USP38	0	genome.wustl.edu	37	chr4	144116875	144116875	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tccttcaatttcagaatgatTgactggctatcctggccatt	7	10	2	3			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	144116875	144116875	T	G	SNP	USP38	ENST00000307017	human	ensembl	69_37n	1	known	missense	c.825	p.I275M	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP38	HGNC	ENSG00000170185	126	0	0	134	52	27.96	-	-	-	G	144116875	T	G	144116875	3	3	540	1	0	0	0	0	1	0	0	0	17166	1800	63	5	835	5	USP38	4	144116875	Missense_Mutation	SNP	T	TCGA-BH-A0GY-01A-11W-A071-09	3305645	144116875	47037401	13	47555										
SLC1A3	0	genome.wustl.edu	37	chr5	36679791	36679791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tgtggagatggaagacatggGtgtgattggggggcagcttg	20	3	0	3			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	5	36679791	36679791	G	T	SNP	SLC1A3	ENST00000265113	human	ensembl	69_37n	1	known	missense	c.923	p.G308V	0.989	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	252	0	0	209	44	17.39	-	-	-	T	36679791	G	T	36679791	3	4	540	1	0	0	0	0	1	0	0	0	14522	1261	44	4	962	4	SLC1A3	5	36679791	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09		36679791	144235469	14	47556										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720425	140720425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	acgggcgaggtgcgcacggcGcgagccctgctggacagaga	18	12	0	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	5	140720425	140720425	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	silent	c.1887	p.A629	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	143	1	0.69	74	33	30.84	-	-	-	A	140720425	G	A	140720425	2	1	540	1	0	0	0	0	0	0	0	1	11627	1074	38	1		1	PCDHGA2	5	140720425	Silent	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	104040634	140720425	40194835	15	47557										
ABCA13	0	genome.wustl.edu	37	chr7	48284232	48284232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	cctgccccagtggccggcacTgaagagatttcttcagcttg	11	13	2	2			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	7	48284232	48284232	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.1322	p.L441P	0.025	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	109	0	0	86	36	29.51	-	-	-	C	48284232	T	C	48284232	3	2	540	1	0	0	0	0	1	0	0	0	31	1580	55	5	1193	5	ABCA13	7	48284232	Missense_Mutation	SNP	T	TCGA-BH-A0GY-01A-11W-A071-09		48284232	110854431	16	47558										
OR2A7	0	genome.wustl.edu	37	chr7	143956296	143956297	+	Frame_Shift_Ins	INS	-	-	T													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tccaggaagtcaccgcgaggINSgtgatgcagactctccaggt							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	7	143956296	143956297	-	T	INS	OR2A7	ENST00000493325	human	ensembl	69_37n	-1	known	frame_shift_ins	c.426_425	p.L143fs	0.000:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896	34	0	0	11	2	15.38	-	-	-	T	143956297	-	T	143956296	7	5	540	1	0	1	1	0	0	0	0	0	11055	1219	43	0	509	0	OR2A7	7	143956296	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09	95672064	143956296	15182367	17	47559										
FREM1	0	genome.wustl.edu	37	chr9	14868864	14868864	+	Frame_Shift_Del	DEL	G	G	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tcctgacaggaaggcagagtGgcccttcatcaccctcaccc							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	9	14868864	14868864	G	-	DEL	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	frame_shift_del	c.112	p.H38fs	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	26	0	0	18	2	10	-	-	-	-	14868864	G	-	14868864	7	5	540	1	0	1	0	1	0	0	0	0	6093	1348	47	0	6621	0	FREM1	9	14868864	Frame_Shift_Del	DEL	G	TCGA-BH-A0GY-01A-11W-A071-09		14868864	126344567	18	47560										
HPS6	0	genome.wustl.edu	37	chr10	103826282	103826282	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	agaggaaggtcctaagtacaGacagggtacatctgctagaa	12	7	1	3			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	10	103826282	103826282	G	T	SNP	HPS6	ENST00000299238	human	ensembl	69_37n	1	known	missense	c.1051	p.D351Y	1.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189	99	0	0	21	5	19.23	-	-	-	T	103826282	G	T	103826282	3	4	540	1	0	0	0	0	1	0	0	0	7394	942	33	2	1053	2	HPS6	10	103826282	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09		103826282	31708465	19	47561										
KCNA1	0	genome.wustl.edu	37	chr12	5021358	5021358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	atttcatcacgctgggcaccGagatagctgagcaggaagga	13	9	2	2			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	12	5021358	5021358	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.814	p.E272K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	119	0	0	65	30	31.25	-	-	-	A	5021358	G	A	5021358	3	1	540	1	0	0	0	0	1	0	0	0	8055	1059	37	1	816	1	KCNA1	12	5021358	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09		5021358	128830537	20	47562										
PPFIA2	0	genome.wustl.edu	37	chr12	81671196	81671196	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ccatattgtaaacttgttctTttttttttattaaaaaaaaa	2	4	1	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	12	81671196	81671196	T	C	SNP	PPFIA2	ENST00000333447	human	ensembl	69_37n	-1	known	silent	c.3174	p.K1058	0.185	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_tRNA-bd_arm,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	8	0	0	10	11	52.38	-	-	-	C	81671196	T	C	81671196	2	2	540	1	0	0	0	0	0	0	0	1	12383	1856	64	5		5	PPFIA2	12	81671196	Silent	SNP	T	TCGA-BH-A0GY-01A-11W-A071-09	76649838	81671196	52180699	21	47563										
ALG11	0	genome.wustl.edu	37	chr13	52586563	52586563	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ggtcggcggaagatggcggcCggcgaaaggagctggtgcct	20	9	0	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	13	52586563	52586563	C	T	SNP	ALG11	ENST00000521508	human	ensembl	69_37n	1	known	silent	c.9	p.A3	0.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710	22	0	0	16	11	40.74	-	-	-	T	52586563	C	T	52586563	2	4	540	1	0	0	0	0	0	0	0	1	513	639	23	1		1	ALG11	13	52586563	Silent	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		52586563	62583315	22	47564										
CHRNA7	0	genome.wustl.edu	37	chr15	32460485	32460485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gaggtccgctacattgccaaCcgcttccgctgccaggacga	11	15	0	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	15	32460485	32460485	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	1	known	silent	c.1422	p.N474	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	8	0	0	3	3	50	-	-	-	T	32460485	C	T	32460485	2	4	540	1	0	0	0	0	0	0	0	1	3417	506	18	4		4	CHRNA7	15	32460485	Silent	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		32460485	70070907	23	47565										
ABAT	0	genome.wustl.edu	37	chr16	8829606	8829606	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ctcaaggggtcatggcctccAtgttgctcgcccagcgcctg	12	15	2	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	8829606	8829606	A	G	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	missense	c.10	p.M4V	0.968	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	16	0	0	2	7	77.78	-	-	-	G	8829606	A	G	8829606	3	3	540	1	0	0	0	0	1	0	0	0	27	217	8	5	12	5	ABAT	16	8829606	Missense_Mutation	SNP	A	TCGA-BH-A0GY-01A-11W-A071-09		8829606	81525147	24	47566										
ZNF646	0	genome.wustl.edu	37	chr16	31090899	31090899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ctttctctgccctgtctgctCccgctgctaccccaacctgg	7	19	2	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	31090899	31090899	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.3254	p.S1085F	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	182	0	0	50	14	21.88	-	-	-	T	31090899	C	T	31090899	3	4	540	1	0	0	0	0	1	0	0	0	18158	855	30	2	3256	2	ZNF646	16	31090899	Missense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09	22261293	31090899	59263854	25	47567										
GPT2	0	genome.wustl.edu	37	chr16	46960909	46960909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ctggcatctgtgtcgtgcccGgcagtggctttgggcagagg	17	10	1	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	46960909	46960909	G	A	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	1	known	missense	c.1441	p.G481S	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	70	0	0	43	23	34.85	-	-	-	A	46960909	G	A	46960909	3	1	540	1	0	0	0	0	1	0	0	0	6789	1116	39	1	1479	1	GPT2	16	46960909	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	15870010	46960909	43393844	26	47568										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	155	0	0	53	56	51.38	-	-	-	T	7578406	C	T	7578406	3	4	540	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		7578406	73616804	27	47569										
MAP2K4	0	genome.wustl.edu	37	chr17	12028665	12028665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gatatgatgtccgctctgatGtctggagtttggggatcaca	13	7	3	2			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	12028665	12028665	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.901	p.V301F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	135	0	0	92	113	55.12	-	-	-	T	12028665	G	T	12028665	3	4	540	1	0	0	0	0	1	0	0	0	9310	1377	48	4	898	4	MAP2K4	17	12028665	Missense_Mutation	SNP	G	TCGA-BH-A0GY-01A-11W-A071-09	4450259	12028665	69166545	28	47570										
ITGA2B	0	genome.wustl.edu	37	chr17	42463072	42463073	+	Frame_Shift_Ins	INS	-	-	G													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	aggacgttccagtgctgccaINSgggggcgcaggcctggagaa							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	42463072	42463073	-	G	INS	ITGA2B	ENST00000262407	human	ensembl	69_37n	-1	known	frame_shift_ins	c.421_420	p.W140fs	0.998:0.998	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	19	0	0	8	2	20	-	-	-	G	42463073	-	G	42463072	7	5	540	1	0	1	1	0	0	0	0	0	7930	188	7	0	2806	0	ITGA2B	17	42463072	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09	30434407	42463072	38732138	29	47571										
STRADA	0	genome.wustl.edu	37	chr17	61781404	61781404	+	Frame_Shift_Del	DEL	G	G	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ttcaggagggtgctggcactGggcctggagggaaaggggag							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	61781404	61781404	G	-	DEL	STRADA	ENST00000336174	human	ensembl	69_37n	-1	known	frame_shift_del	c.1104	p.S369fs	0.606	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	24	0	0	16	2	11.11	-	-	-	-	61781404	G	-	61781404	7	5	540	1	0	1	0	1	0	0	0	0	15415	1348	47	0	199	0	STRADA	17	61781404	Frame_Shift_Del	DEL	G	TCGA-BH-A0GY-01A-11W-A071-09	19318332	61781404	19413806	30	47572										
THOC1	0	genome.wustl.edu	37	chr18	225118	225119	+	Frame_Shift_Ins	INS	-	-	G													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	tttgaaaatctttctccatcINSgggggggttttcagatagta							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	18	225118	225119	-	G	INS	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1108_1107	p.D369fs	1.000:0.059	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	27	0	0	20	3	13.04	-	-	-	G	225119	-	G	225118	7	5	540	1	0	1	1	0	0	0	0	0	15959	884	31	0	897	0	THOC1	18	225118	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09		225118	77852130	31	47573										
COLEC12	0	genome.wustl.edu	37	chr18	334817	334818	+	Frame_Shift_Ins	INS	-	-	G													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	cctgatgggccaggagggccINSgggggggcccttggggcctg							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	18	334817	334818	-	G	INS	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1741_1740	p.G580fs	0.997:0.111	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	28	0	0	9	2	18.18	-	-	-	G	334818	-	G	334817	7	5	540	1	0	1	1	0	0	0	0	0	3742	652	23	0	507	0	COLEC12	18	334817	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09	109699	334817	77742431	32	47574										
DNMT1	0	genome.wustl.edu	37	chr19	10249146	10249146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gctcacaaacttcttgtcatCcaccaccacgctcagctggc	6	17	4	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	10249146	10249146	C	G	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.4084	p.D1362H	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	63	0	0	25	4	13.79	-	-	-	G	10249146	C	G	10249146	3	3	540	1	0	0	0	0	1	0	0	0	4710	855	30	2	842	2	DNMT1	19	10249146	Missense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		10249146	48879837	33	47575										
CARM1	0	genome.wustl.edu	37	chr19	11024609	11024609	+	Frame_Shift_Del	DEL	G	G	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gtggtcatcccgggcaaggtGgaggaggtgtcactccccga							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	11024609	11024609	G	-	DEL	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	frame_shift_del	c.726	p.E243fs	1.000	pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	26	0	0	5	2	28.57	-	-	-	-	11024609	G	-	11024609	7	5	540	1	0	1	0	1	0	0	0	0	2680	1335	47	0	748	0	CARM1	19	11024609	Frame_Shift_Del	DEL	G	TCGA-BH-A0GY-01A-11W-A071-09	775463	11024609	48104374	34	47576										
LPHN1	0	genome.wustl.edu	37	chr19	14262349	14262349	+	Frame_Shift_Del	DEL	A	A	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gagggaaatccccacttcgcAaggagtaactgttattgaag							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	14262349	14262349	A	-	DEL	LPHN1	ENST00000340736	human	ensembl	69_37n	-1	known	frame_shift_del	c.3761	p.L1254fs	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071	53	0	0	17	2	10.53	-	-	-	-	14262349	A	-	14262349	7	5	540	1	0	1	0	1	0	0	0	0	8981	131	5	0	667	0	LPHN1	19	14262349	Frame_Shift_Del	DEL	A	TCGA-BH-A0GY-01A-11W-A071-09	3237740	14262349	44866634	35	47577										
DPY19L3	0	genome.wustl.edu	37	chr19	32949349	32949349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ttcagatactctgcttttttAtgcttacatattcgttctgt	5	8	3	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	32949349	32949349	A	G	SNP	DPY19L3	ENST00000342179	human	ensembl	69_37n	1	known	missense	c.1256	p.Y419C	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	134	0	0	119	22	15.6	-	-	-	G	32949349	A	G	32949349	3	3	540	1	0	0	0	0	1	0	0	0	4777	449	16	5	1298	5	DPY19L3	19	32949349	Missense_Mutation	SNP	A	TCGA-BH-A0GY-01A-11W-A071-09	18687000	32949349	26179634	36	47578										
ARHGAP35	0	genome.wustl.edu	37	chr19	47424158	47424158	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	gcttctgctggcattggttaCggacgcaacattaatgaaaa	10	8	1	1			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	47424158	47424158	C	G	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	nonsense	c.2226	p.Y742*	0.932	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	64	0	0	51	27	34.62	-	-	-	G	47424158	C	G	47424158	4	3	540	1	0	0	0	0	0	1	0	0	6846	547	19	3	2228	3	ARHGAP35	19	47424158	Nonsense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09	14474809	47424158	11704825	37	47579										
SLC27A5	0	genome.wustl.edu	37	chr19	59022779	59022780	+	Frame_Shift_Ins	INS	-	-	C													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	agggctggaacggcctgggaINSagccagcacaaggagggcag							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	59022779	59022780	-	C	INS	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	frame_shift_ins	c.544_543	p.S181fs	0.000:0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	28	0	0	7	2	22.22	-	-	-	C	59022780	-	C	59022779	7	5	540	1	0	1	1	0	0	0	0	0	14618	246	9	0	1568	0	SLC27A5	19	59022779	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09	11598621	59022779	106204	38	47580										
TRPC4AP	0	genome.wustl.edu	37	chr20	33598008	33598010	+	In_Frame_Del	DEL	GCT	GCT	-													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	acctgtcggtgttgaggacaGcttccacctcagggatgttg							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	20	33598008	33598010	GCT	-	DEL	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	in_frame_del	c.1493_1491	p.EA497in_frame_delD	1.000:1.000:0.697	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	60	0	0	46	11	19.3	-	-	-	-	33598010	GCT	-	33598008	7	5	540	1	0	1	0	1	0	0	0	0	16677	971	34	0	932	0	TRPC4AP	20	33598008	In_Frame_Del	DEL	GCT	TCGA-BH-A0GY-01A-11W-A071-09		33598008	29427512	39	47581										
MED15	0	genome.wustl.edu	37	chr22	20922834	20922835	+	Frame_Shift_Ins	INS	-	-	C													0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ctccgatggtggtgcagcagINScccccagtgcagccccaggt							TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	22	20922834	20922835	-	C	INS	MED15	ENST00000263205	human	ensembl	69_37n	1	known	frame_shift_ins	c.1068_1069	p.V358fs	1.000:0.995	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	11	0	0	4	2	33.33	-	-	-	C	20922835	-	C	20922834	7	5	540	1	0	1	1	0	0	0	0	0	9504	962	34	0	1098	0	MED15	22	20922834	Frame_Shift_Ins	INS	-	TCGA-BH-A0GY-01A-11W-A071-09		20922834	30381732	40	47582										
MAGEC2	0	genome.wustl.edu	37	chrX	141291740	141291740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.487111111111111	0	0.608888888888889	1	1	0	ggtcggggagtcgttgtcaaCgttgcggaatggaacgcctg	17	8	1	0			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	X	141291740	141291740	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.34	p.V12I	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	439	0	0	451	69	13.27	-	-	-	T	141291740	C	T	141291740	3	4	540	1	0	0	0	0	1	0	0	0	9252	536	19	1	1091	1	MAGEC2	23	141291740	Missense_Mutation	SNP	C	TCGA-BH-A0GY-01A-11W-A071-09		141291740	13978820	41	47583										
USF1	0	genome.wustl.edu	37	chr1	161011928	161011928	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	gggtcatggattgagtggcaGggtagccactgatggcgcca	17	8	1	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	1	161011928	161011928	G	C	SNP	USF1	ENST00000368020	human	ensembl	69_37n	-1	known	missense	c.254	p.P85R	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	USF1	HGNC	ENSG00000158773	100	0	0	137	22	13.84	-	-	-	C	161011928	G	C	161011928	3	2	541	1	0	0	0	0	1	0	0	0	17129	1000	35	4	706	4	USF1	1	161011928	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		161011928	88238693	1	47584										
GORAB	0	genome.wustl.edu	37	chr1	170508668	170508668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	acaatgttgagattctacctCcaaagccagattgcaaattg	7	9	1	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	1	170508668	170508668	C	A	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.454	p.P152T	0.999	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	122	0	0	111	39	26	-	-	-	A	170508668	C	A	170508668	3	1	541	1	0	0	0	0	1	0	0	0	6623	855	30	2	460	2	GORAB	1	170508668	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09	9496740	170508668	78741953	2	47585										
CACNA1S	0	genome.wustl.edu	37	chr1	201030559	201030559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	gttgttgtagatgggacccaCgtcctccgcattggagtcta	12	10	1	1			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	1	201030559	201030559	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.3091	p.V1031M	0.009	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	57	0	0	32	9	21.95	-	-	-	T	201030559	C	T	201030559	3	4	541	1	0	0	0	0	1	0	0	0	2572	536	19	1	2610	1	CACNA1S	1	201030559	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09	30521891	201030559	48220062	3	47586										
TRMT61B	0	genome.wustl.edu	37	chr2	29092602	29092602	+	Frame_Shift_Del	DEL	T	T	-													0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ggactgccccccagttactaTttaagagtccgaagttgttc							TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	29092602	29092602	T	-	DEL	TRMT61B	ENST00000306108	human	ensembl	69_37n	-1	known	frame_shift_del	c.542	p.N181fs	0.713	pfam_tRNA_MeTrfase_GCD14	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	-	no_errors	TRMT61B	HGNC	ENSG00000171103	275	0	0	161	84	34.01	-	-	-	-	29092602	T	-	29092602	7	5	541	1	0	1	0	1	0	0	0	0	16666	1493	52	0	919	0	TRMT61B	2	29092602	Frame_Shift_Del	DEL	T	TCGA-BH-A0GZ-01A-11W-A071-09		29092602	214106771	4	47587										
FOXN2	0	genome.wustl.edu	37	chr2	48600495	48600495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	tctatagaacaaggaattttAgaatgtaagtaatcatgcct	7	5	2	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	48600495	48600495	A	C	SNP	FOXN2	ENST00000340553	human	ensembl	69_37n	1	known	missense	c.768	p.L256F	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802	113	0	0	72	38	34.23	-	-	-	C	48600495	A	C	48600495	3	2	541	1	0	0	0	0	1	0	0	0	6068	417	15	5	782	5	FOXN2	2	48600495	Missense_Mutation	SNP	A	TCGA-BH-A0GZ-01A-11W-A071-09	19507893	48600495	194598878	5	47588										
CEP68	0	genome.wustl.edu	37	chr2	65299971	65299971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	tggggagcagccaggccctcGgggtctcctctggactgctg	16	13	2	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	65299971	65299971	G	T	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	missense	c.1741	p.G581W	0.001	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	96	0	0	60	21	25.93	-	-	-	T	65299971	G	T	65299971	3	4	541	1	0	0	0	0	1	0	0	0	3287	1116	39	3	1747	3	CEP68	2	65299971	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09	16699476	65299971	177899402	6	47589										
NEB	0	genome.wustl.edu	37	chr2	152432783	152432783	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	tgtcacaaaagatattctggGcgtttttgactctcaacact	7	9	3	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	152432783	152432783	G	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.16790	p.A5597D	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	103	0	0	93	34	26.77	-	-	-	T	152432783	G	T	152432783	3	4	541	1	0	0	0	0	1	0	0	0	10374	1203	42	4	9204	4	NEB	2	152432783	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09	87132812	152432783	90766590	7	47590										
PPIG	0	genome.wustl.edu	37	chr2	170493412	170493412	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	gcacaatccaggagtagagaAtgtgatataactaaaggtaa	10	5	0	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	170493412	170493412	A	G	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	1	known	silent	c.1644	p.E548	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	186	0	0	120	71	37.17	-	-	-	G	170493412	A	G	170493412	2	3	541	1	0	0	0	0	0	0	0	1	12401	98	4	5		5	PPIG	2	170493412	Silent	SNP	A	TCGA-BH-A0GZ-01A-11W-A071-09	18060629	170493412	72705961	8	47591										
SLC40A1	0	genome.wustl.edu	37	chr2	190430090	190430090	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ttcagtttacctttgtgtaaAttcagctgtttcaattcagt	6	7	4	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	2	190430090	190430090	A	G	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	silent	c.750	p.N250	0.912	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	135	0	0	110	14	11.29	-	-	-	G	190430090	A	G	190430090	2	3	541	1	0	0	0	0	0	0	0	1	14717	98	4	5		5	SLC40A1	2	190430090	Silent	SNP	A	TCGA-BH-A0GZ-01A-11W-A071-09	19936678	190430090	52769283	9	47592										
SETD2	0	genome.wustl.edu	37	chr3	47142959	47142959	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	aatacttacccatatctctgGaactgatagtcaaacgttaa	5	9	2	1			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	3	47142959	47142959	G	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.5004	p.F1668L	0.997	smart_SET_dom,pfscan_SET_dom	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	364	0	0	271	115	29.79	-	-	-	C	47142959	G	C	47142959	3	2	541	1	0	0	0	0	1	0	0	0	14219	1165	41	2	2746	2	SETD2	3	47142959	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		47142959	150879471	10	47593										
SELT	0	genome.wustl.edu	37	chr3	150340928	150340928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ctttggcatgcaagctcctaGcatctggcagtggggccaag	13	11	1	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	3	150340928	150340928	G	T	SNP	SELT	ENST00000477889	human	ensembl	69_37n	1	putative	missense	c.173	p.S58I	1.000	pfam_Selenoprotein_Rdx-typ,tigrfam_Selenoprotein_Rdx-typ	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_errors	RP11-392O18.1	Clone_based_vega_gene	ENSG00000198843	79	0	0	69	37	34.91	-	-	-	T	150340928	G	T	150340928	3	4	541	1	0	0	0	0	1	0	0	0	14110	971	34	4	357	4	SELT	3	150340928	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09	103197969	150340928	47681502	11	47594										
TAS2R16	0	genome.wustl.edu	37	chr7	122634847	122634847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ttagaatccttttcaacgtaGggctgctcagcatcagtgaa	9	9	3	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	7	122634847	122634847	G	A	SNP	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	missense	c.842	p.P281L	0.016	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	297	0	0	217	107	33.02	-	-	-	A	122634847	G	A	122634847	3	1	541	1	0	0	0	0	1	0	0	0	15661	1000	35	4	37	4	TAS2R16	7	122634847	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		122634847	36503816	12	47595										
RB1CC1	0	genome.wustl.edu	37	chr8	53543057	53543057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	tagctatcttttcagaatgcCttgaagatactgaagacatg	8	7	2	5			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	8	53543057	53543057	C	T	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.4472	p.R1491K	1.000	pfam_Autophagy-rel_p11	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	33	0	0	26	16	38.1	-	-	-	T	53543057	C	T	53543057	3	4	541	1	0	0	0	0	1	0	0	0	13182	681	24	4	328	4	RB1CC1	8	53543057	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09		53543057	92820965	13	47596										
KIAA0913	0	genome.wustl.edu	37	chr10	75552004	75552005	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	cccgccgcctctcagctgaaINSgggggagataaagctctaca							TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	10	75552004	75552005	-	G	INS	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	frame_shift_ins	c.1707_1708	p.D571fs	0.977:1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	14	0	0	11	2	15.38	-	-	-	G	75552005	-	G	75552004	7	5	541	1	0	1	1	0	0	0	0	0	8252	69	3	0	1745	0	KIAA0913	10	75552004	Frame_Shift_Ins	INS	-	TCGA-BH-A0GZ-01A-11W-A071-09		75552004	59982743	14	47597										
DNMBP	0	genome.wustl.edu	37	chr10	101728874	101728874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	atttgatgagcagcttacctCgatggaggggaagattatcc	12	7	0	3			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	10	101728874	101728874	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.266	p.R89Q	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	128	0	0	91	32	26.02	-	-	-	T	101728874	C	T	101728874	3	4	541	1	0	0	0	0	1	0	0	0	4709	884	31	1	4527	1	DNMBP	10	101728874	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09	26176870	101728874	33805873	15	47598										
C3AR1	0	genome.wustl.edu	37	chr12	8212541	8212541	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ctgtccctggagagccaagtGagccagcgagaagggcaagg	16	10	0	3			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	12	8212541	8212541	G	A	SNP	C3AR1	ENST00000307637	human	ensembl	69_37n	-1	known	missense	c.241	p.H81Y	0.036	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_C3A_anaphtx_rcpt,prints_Frt_met_rcpt,prints_C5A_anaphtx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C3A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Frt_met_rcpt,prints_C5A_anaphtx_rcpt	-	no_errors	C3AR1	HGNC	ENSG00000171860	225	0	0	188	62	24.8	-	-	-	A	8212541	G	A	8212541	3	1	541	1	0	0	0	0	1	0	0	0	2225	1290	45	2	1211	2	C3AR1	12	8212541	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		8212541	125639354	16	47599										
YLPM1	0	genome.wustl.edu	37	chr14	75247171	75247171	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ctgcagcagcacactggcagCagcaccagcagcatcgagtc	11	15	0	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	14	75247171	75247171	C	T	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	nonsense	c.1174	p.Q392*	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	387	0	0	170	151	46.75	-	-	-	T	75247171	C	T	75247171	4	4	541	1	0	0	0	0	0	1	0	0	17583	711	25	4	1184	4	YLPM1	14	75247171	Nonsense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09		75247171	32102369	17	47600										
FBN1	0	genome.wustl.edu	37	chr15	48757774	48757774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ggaccatttaccatcacacaCtcgtgtatcttcattcaggt	6	12	4	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	15	48757774	48757774	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.4933	p.V1645M	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	183	0	0	141	59	29.35	-	-	-	T	48757774	C	T	48757774	3	4	541	1	0	0	0	0	1	0	0	0	5748	565	20	4	3790	4	FBN1	15	48757774	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09		48757774	53773618	18	47601										
PDE8A	0	genome.wustl.edu	37	chr15	85659299	85659299	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	agctcgggccatggaaaatgAggaatactgggactttgata	13	6	0	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	15	85659299	85659299	A	T	SNP	PDE8A	ENST00000310298	human	ensembl	69_37n	1	known	missense	c.1484	p.E495V	0.908	NULL	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417	293	0	0	145	68	31.78	-	-	-	T	85659299	A	T	85659299	3	4	541	1	0	0	0	0	1	0	0	0	11726	304	11	5	1546	5	PDE8A	15	85659299	Missense_Mutation	SNP	A	TCGA-BH-A0GZ-01A-11W-A071-09	36901525	85659299	16872093	19	47602										
KIAA0430	0	genome.wustl.edu	37	chr16	15696479	15696480	+	Frame_Shift_Del	DEL	GA	GA	-													0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	gaagaagaaaggaggaggagGaaggaaagaaggaagaggag							TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	16	15696479	15696480	GA	-	DEL	KIAA0430	ENST00000344181	human	ensembl	69_37n	-1	known	frame_shift_del	c.3340_3339	p.P1114fs	0.000:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	22	0	0	6	4	36.36	-	-	-	-	15696480	GA	-	15696479	7	5	541	1	0	1	0	1	0	0	0	0	8229	1189	41	0		0	KIAA0430	16	15696479	Frame_Shift_Del	DEL	GA	TCGA-BH-A0GZ-01A-11W-A071-09		15696479	74658274	20	47603										
ZNF688	0	genome.wustl.edu	37	chr16	30581301	30581301	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	caggcgggtcccggtcacctCggacgggggcccgaggcaca	17	15	1	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	16	30581301	30581301	C	G	SNP	ZNF688	ENST00000223459	human	ensembl	69_37n	-1	known	missense	c.767	p.R256P	0.200	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF688	HGNC	ENSG00000229809	10	0	0	7	5	41.67	-	-	-	G	30581301	C	G	30581301	3	3	541	1	0	0	0	0	1	0	0	0	18189	884	31	3	67	3	ZNF688	16	30581301	Missense_Mutation	SNP	C	TCGA-BH-A0GZ-01A-11W-A071-09	14884822	30581301	59773452	21	47604										
PRPF8	0	genome.wustl.edu	37	chr17	1564332	1564332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	agtaagtgcccttaaagagtGtgtgttccagaatgccttcc	10	9	0	2			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	17	1564332	1564332	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.4463	p.T1488I	1.000	pfam_Prp8_U6-snRNA-bd	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	74	0	0	81	11	11.96	-	-	-	A	1564332	G	A	1564332	3	1	541	1	0	0	0	0	1	0	0	0	12656	1377	48	4	2608	4	PRPF8	17	1564332	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		1564332	79630878	22	47605										
TADA2A	0	genome.wustl.edu	37	chr17	35837018	35837018	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	caggcaagagcactcatcaaGatagatgtgaacaaaacccg	9	10	2	4			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	17	35837018	35837018	G	A	SNP	TADA2A	ENST00000225396	human	ensembl	69_37n	1	known	silent	c.1263	p.K421	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264	241	0	0	225	109	32.63	-	-	-	A	35837018	G	A	35837018	2	1	541	1	0	0	0	0	0	0	0	1	15602	933	33	2		2	TADA2A	17	35837018	Silent	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09	34272686	35837018	45358192	23	47606										
CPXM1	0	genome.wustl.edu	37	chr20	2776476	2776476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	cacgagctcacccccgtggaGgttggcacttagcacaaagg	12	13	1	0			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	20	2776476	2776476	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.1489	p.L497F	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	51	0	0	35	7	16.67	-	-	-	A	2776476	G	A	2776476	3	1	541	1	0	0	0	0	1	0	0	0	3867	1000	35	4	731	4	CPXM1	20	2776476	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09		2776476	60249044	24	47607										
HDAC6	0	genome.wustl.edu	37	chrX	48681900	48681901	+	Frame_Shift_Ins	INS	-	-	C													0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	ctcgagcacagaccaccagaINScccccccaacctcacctgtg							TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	X	48681900	48681901	-	C	INS	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	frame_shift_ins	c.3133_3134	p.T1048fs	0.328:0.014	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	35	0	0	17	3	15	-	-	-	C	48681901	-	C	48681900	7	5	541	1	0	1	1	0	0	0	0	0	7062	275	10	0	3185	0	HDAC6	23	48681900	Frame_Shift_Ins	INS	-	TCGA-BH-A0GZ-01A-11W-A071-09		48681900	106588660	25	47608										
ARMCX2	0	genome.wustl.edu	37	chrX	100912411	100912411	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.967532467532468	0	1.35454545454545	0.333333333333333	0.930327025915261	0	tgaatccggctcttagcccaGctctagccctggctccagtc	9	16	2	1			TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	068bd892-6fee-46c2-945f-34a6c6804070	907908c6-b11c-4e36-980e-f4aa6a132057	X	100912411	100912411	G	C	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	missense	c.164	p.A55G	0.393	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	104	0	0	100	41	29.08	-	-	-	C	100912411	G	C	100912411	3	2	541	1	0	0	0	0	1	0	0	0	964	971	34	4	1738	4	ARMCX2	23	100912411	Missense_Mutation	SNP	G	TCGA-BH-A0GZ-01A-11W-A071-09	52230511	100912411	54358149	26	47609										
TTLL3	0	genome.wustl.edu	37	chr3	9859333	9859333	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	gtggctaactccgtaggtggGtctatgtctcaatctccgga	12	10	3	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	9859333	9859333	G	T	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	missense	c.749	p.G250V	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	98	0	0	95	60	38.71	-	-	-	T	9859333	G	T	9859333	3	4	542	1	0	0	0	0	1	0	0	0	16825	1261	44	4	334	4	TTLL3	3	9859333	Missense_Mutation	SNP	G	TCGA-BH-A0H0-01A-11W-A071-09		9859333	188163097	1	47610										
CADPS	0	genome.wustl.edu	37	chr3	62423869	62423869	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	aaagtcacgtaggcgtcggcCacgtccatcccgggtttctg	12	13	2	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	62423869	62423869	C	G	SNP	CADPS	ENST00000473635	human	ensembl	69_37n	-1	known	missense	c.662	p.W221S	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CADPS	HGNC	ENSG00000163618	141	0	0	104	58	35.8	-	-	-	G	62423869	C	G	62423869	3	3	542	1	0	0	0	0	1	0	0	0	2595	581	21	4	386	4	CADPS	3	62423869	Missense_Mutation	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09	52564536	62423869	135598561	2	47611										
PROK2	0	genome.wustl.edu	37	chr3	71821981	71821981	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	tccgcccaaaaaatggaaccTaaataaaaaagaaaacggag	7	8	0	1			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	71821981	71821981	T	C	SNP	PROK2	ENST00000295619	human	ensembl	69_37n	-1	known	splice_site	c.286-2	e4-2	0.999	-	-	-	no_errors	PROK2	HGNC	ENSG00000163421	38	0	0	86	52	37.68	-	-	-	C	71821981	T	C	71821981	5	2	542	1	0	0	0	0	0	0	1	0	12632	1536	53	5	109	5	PROK2	3	71821981	Splice_Site	SNP	T	TCGA-BH-A0H0-01A-11W-A071-09	9398112	71821981	126200449	3	47612										
PPM1L	0	genome.wustl.edu	37	chr3	160783305	160783305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	cgctattcctttgtctcatgAtcacaagccttaccagttga	6	12	2	2			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	160783305	160783305	A	C	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	1	known	missense	c.689	p.D230A	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	228	0	0	172	132	43.28	-	-	-	C	160783305	A	C	160783305	3	2	542	1	0	0	0	0	1	0	0	0	12421	333	12	5	699	5	PPM1L	3	160783305	Missense_Mutation	SNP	A	TCGA-BH-A0H0-01A-11W-A071-09	88961324	160783305	37239125	4	47613										
SORCS2	0	genome.wustl.edu	37	chr4	7714487	7714487	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	ggccacatcagcttccgctcCgattgggagctggtcaaggt	13	12	2	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	7714487	7714487	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	69_37n	1	known	silent	c.1896	p.S632	0.593	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	46	0	0	50	8	13.79	-	-	-	T	7714487	C	T	7714487	2	4	542	1	0	0	0	0	0	0	0	1	15020	639	23	1		1	SORCS2	4	7714487	Silent	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09		7714487	183439789	5	47614										
TMEM155	0	genome.wustl.edu	37	chr4	122681612	122681612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	cttcttcttgtggggtgctgCggggaccatcttggaacctg	14	10	3	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	122681612	122681612	C	T	SNP	TMEM155	ENST00000337677	human	ensembl	69_37n	-1	known	missense	c.230	p.R77H	0.000	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112	16	0	0	9	5	35.71	-	-	-	T	122681612	C	T	122681612	3	4	542	1	0	0	0	0	1	0	0	0	16167	768	27	1	166	1	TMEM155	4	122681612	Missense_Mutation	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09	114967125	122681612	68472664	6	47615										
RICTOR	0	genome.wustl.edu	37	chr5	38958580	38958580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	aaacccttgtctccaaggtgGgataacgctggtttcatctg	10	10	3	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	38958580	38958580	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.2385	p.S795	0.731	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	157	0	0	121	89	42.38	-	-	-	A	38958580	G	A	38958580	2	1	542	1	0	0	0	0	0	0	0	1	13442	1219	43	4		4	RICTOR	5	38958580	Silent	SNP	G	TCGA-BH-A0H0-01A-11W-A071-09		38958580	141956680	7	47616										
ZNF354B	0	genome.wustl.edu	37	chr5	178310408	178310408	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	ggctttttatacatcaaaaaAtccatgctcaagaaaatccc	4	10	2	1			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	178310408	178310408	A	C	SNP	ZNF354B	ENST00000322434	human	ensembl	69_37n	1	known	missense	c.955	p.I319L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338	183	0	0	122	65	34.76	-	-	-	C	178310408	A	C	178310408	3	2	542	1	0	0	0	0	1	0	0	0	17961	101	4	5	969	5	ZNF354B	5	178310408	Missense_Mutation	SNP	A	TCGA-BH-A0H0-01A-11W-A071-09	139351828	178310408	2604852	8	47617										
BMPER	0	genome.wustl.edu	37	chr7	34192803	34192803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	tggtccatgcaacaagccgtGcgttgctgggtgccactgtc	13	12	0	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	34192803	34192803	G	T	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	1	known	missense	c.1976	p.C659F	0.997	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	232	0	0	150	99	39.76	-	-	-	T	34192803	G	T	34192803	3	4	542	1	0	0	0	0	1	0	0	0	1473	1319	46	4	2034	4	BMPER	7	34192803	Missense_Mutation	SNP	G	TCGA-BH-A0H0-01A-11W-A071-09		34192803	124945860	9	47618										
AOAH	0	genome.wustl.edu	37	chr7	36552857	36552857	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	gggtgcatgctcctgagaggCtcagtgcccgccttggtctc	14	13	2	1			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	36552857	36552857	C	T	SNP	AOAH	ENST00000431169	human	ensembl	69_37n	-1	putative	silent	c.1848	p.E616	0.604	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	233	0	0	218	100	31.45	-	-	-	T	36552857	C	T	36552857	2	4	542	1	0	0	0	0	0	0	0	1	727	796	28	4		4	AOAH	7	36552857	Silent	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09	2360054	36552857	122585806	10	47619										
ACTL6B	0	genome.wustl.edu	37	chr7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G													0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	tctccttcttcttccagtttINSgggggggcaccctcccggac							TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	20	0	0	18	3	14.29	-	-	-	G	100245131	-	G	100245130	7	5	542	1	0	1	1	0	0	0	0	0	199	1799	63	0	612	0	ACTL6B	7	100245130	Frame_Shift_Ins	INS	-	TCGA-BH-A0H0-01A-11W-A071-09	63692273	100245130	58893533	11	47620										
OR6V1	0	genome.wustl.edu	37	chr7	142749782	142749782	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	tccttcctcatcctgacagaCatggcccttgatcgctttgt	7	14	1	3			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	142749782	142749782	C	A	SNP	OR6V1	ENST00000418316	human	ensembl	69_37n	1	known	missense	c.345	p.D115E	0.991	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6V1	HGNC	ENSG00000225781	311	0	0	128	103	44.59	-	-	-	A	142749782	C	A	142749782	3	1	542	1	0	0	0	0	1	0	0	0	11284	477	17	4	347	4	OR6V1	7	142749782	Missense_Mutation	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09	42504652	142749782	16388881	12	47621										
TMEM71	0	genome.wustl.edu	37	chr8	133764098	133764098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	agttatgttgccatctttgtCgcacaggaagctgtcttcag	10	9	3	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	8	133764098	133764098	C	T	SNP	TMEM71	ENST00000356838	human	ensembl	69_37n	-1	known	missense	c.247	p.D83N	0.923	NULL	NULL	-	no_errors	TMEM71	HGNC	ENSG00000165071	277	0	0	281	620	68.74	-	-	-	T	133764098	C	T	133764098	3	4	542	1	0	0	0	0	1	0	0	0	16295	884	31	1	668	1	TMEM71	8	133764098	Missense_Mutation	SNP	C	TCGA-BH-A0H0-01A-11W-A071-09		133764098	12599924	13	47622										
OR1N1	0	genome.wustl.edu	37	chr9	125289198	125289198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	gtggagtagcagagggggtgGcaaatggccacatagcggtc	18	7	0	1			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	9	125289198	125289198	G	A	SNP	OR1N1	ENST00000304880	human	ensembl	69_37n	-1	known	silent	c.375	p.C125	0.163	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505	132	0	0	77	63	45	-	-	-	A	125289198	G	A	125289198	2	1	542	1	0	0	0	0	0	0	0	1	11042	1195	42	4		4	OR1N1	9	125289198	Silent	SNP	G	TCGA-BH-A0H0-01A-11W-A071-09		125289198	15924233	14	47623										
RNASE3	0	genome.wustl.edu	37	chr14	21359857	21359857	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	acaggaaacatggttccaaaActgttcacttcccaaatttg	6	10	1	0			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	14	21359857	21359857	A	G	SNP	RNASE3	ENST00000304639	human	ensembl	69_37n	1	known	silent	c.12	p.K4	0.000	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE3	HGNC	ENSG00000169397	368	0	0	200	155	43.54	-	-	-	G	21359857	A	G	21359857	2	3	542	1	0	0	0	0	0	0	0	1	13491	40	2	5		5	RNASE3	14	21359857	Silent	SNP	A	TCGA-BH-A0H0-01A-11W-A071-09		21359857	85989683	15	47624										
TLE2	0	genome.wustl.edu	37	chr19	3013795	3013796	+	Frame_Shift_Ins	INS	-	-	G													0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	cagggggtggtagccgggctINSggggggctctgagggttggt							TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	19	3013795	3013796	-	G	INS	TLE2	ENST00000262953	human	ensembl	69_37n	-1	known	frame_shift_ins	c.745_744	p.S248fs	1.000:1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	36	0	0	11	3	21.43	-	-	-	G	3013796	-	G	3013795	7	5	542	1	0	1	1	0	0	0	0	0	16034	1580	55	0	1526	0	TLE2	19	3013795	Frame_Shift_Ins	INS	-	TCGA-BH-A0H0-01A-11W-A071-09		3013795	56115188	16	47625										
PCMTD2	0	genome.wustl.edu	37	chr20	62896720	62896720	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	ctggcgtgcagaaagagcatGaagagtacatgaagaatctt	12	6	1	6			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	20	62896720	62896720	G	A	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	91	0	0	143	99	40.91	-	-	-	A	62896720	G	A	62896720	3	1	542	1	0	0	0	0	1	0	0	0	11660	1291	45	2	530	2	PCMTD2	20	62896720	Missense_Mutation	SNP	G	TCGA-BH-A0H0-01A-11W-A071-09		62896720	128800	17	47626										
XPNPEP2	0	genome.wustl.edu	37	chrX	128887190	128887190	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.922746678348403	0.982558139534884	0	1.12292358803987	1	1	0	gatgaccaaggcagtgaagaAcagcaaggagcaggccctcc	13	11	0	3			TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	X	128887190	128887190	A	G	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	missense	c.1073	p.N358S	1.000	superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	171	0	0	147	48	24.62	-	-	-	G	128887190	A	G	128887190	3	3	542	1	0	0	0	0	1	0	0	0	17540	43	2	5	1115	5	XPNPEP2	23	128887190	Missense_Mutation	SNP	A	TCGA-BH-A0H0-01A-11W-A071-09		128887190	26383370	18	47627										
ATP1B1	0	genome.wustl.edu	37	chr1	169094123	169094124	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	NA	0	1	1	0	tctctctgcctggtctaggaINSttaacacagattcctcagat							TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	1	169094123	169094124	-	T	INS	ATP1B1	ENST00000367815	human	ensembl	69_37n	1	known	frame_shift_ins	c.228_229	p.L76fs	0.995:0.992	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	268	0	0	308	52	14.44	-	-	-	T	169094124	-	T	169094123	7	5	543	1	0	1	1	0	0	0	0	0	1136	347	12	0	238	0	ATP1B1	1	169094123	Frame_Shift_Ins	INS	-	TCGA-BH-A0H3-01A-11D-A12Q-09		169094123	80156498	1	47628										
PDE11A	0	genome.wustl.edu	37	chr2	178936669	178936669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagaatatgggctgtggtggGgggcagggagcttgccttcc	19	7	0	1			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	178936669	178936669	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.496	p.P166S	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	82	0	0	73	15	17.05	-	-	-	A	178936669	G	A	178936669	3	1	543	1	0	0	0	0	1	0	0	0	11704	1232	43	4	2385	4	PDE11A	2	178936669	Missense_Mutation	SNP	G	TCGA-BH-A0H3-01A-11D-A12Q-09		178936669	64262704	2	47629										
SP140L	0	genome.wustl.edu	37	chr2	231265764	231265764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tcctggagaggcagatgtgtCctgaggaacagttggtaaat	14	6	0	3			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	231265764	231265764	C	T	SNP	SP140L	ENST00000415673	human	ensembl	69_37n	1	known	missense	c.1408	p.P470S	0.092	superfamily_Bromodomain,smart_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404	41	0	0	35	11	23.91	-	-	-	T	231265764	C	T	231265764	3	4	543	1	0	0	0	0	1	0	0	0	15052	855	30	2	1470	2	SP140L	2	231265764	Missense_Mutation	SNP	C	TCGA-BH-A0H3-01A-11D-A12Q-09	52329095	231265764	11933609	3	47630										
NGEF	0	genome.wustl.edu	37	chr2	233759485	233759485	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgctcactgacagccagcaCgtccaggacgttggagaaga	12	13	1	3			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	233759485	233759485	C	T	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	missense	c.970	p.V324M	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	46	0	0	19	15	44.12	-	-	-	T	233759485	C	T	233759485	3	4	543	1	0	0	0	0	1	0	0	0	10466	536	19	1	1202	1	NGEF	2	233759485	Missense_Mutation	SNP	C	TCGA-BH-A0H3-01A-11D-A12Q-09	2493721	233759485	9439888	4	47631										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	135	0	0	125	23	15.54	-	-	-	A	178921553	T	A	178921553	3	1	543	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-BH-A0H3-01A-11D-A12Q-09		178921553	19100877	5	47632										
BRPF3	0	genome.wustl.edu	37	chr6	36181879	36181879	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcaacgcttgctcagtgacaAtggcatcaacagactatccc	8	13	2	2			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	6	36181879	36181879	A	G	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.2705	p.N902S	0.986	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	85	0	0	59	24	28.92	-	-	-	G	36181879	A	G	36181879	3	3	543	1	0	0	0	0	1	0	0	0	1529	101	4	5	2731	5	BRPF3	6	36181879	Missense_Mutation	SNP	A	TCGA-BH-A0H3-01A-11D-A12Q-09		36181879	134933188	6	47633										
FZD3	0	genome.wustl.edu	37	chr8	28385071	28385071	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgaagatcgagtagcctgcaAtgcatccatccctgcacaat	8	12	0	2			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	8	28385071	28385071	A	G	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	1	known	missense	c.794	p.N265S	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	173	0	0	149	43	22.4	-	-	-	G	28385071	A	G	28385071	3	3	543	1	0	0	0	0	1	0	0	0	6180	101	4	5	804	5	FZD3	8	28385071	Missense_Mutation	SNP	A	TCGA-BH-A0H3-01A-11D-A12Q-09		28385071	117978951	7	47634										
TEX15	0	genome.wustl.edu	37	chr8	30705430	30705430	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gcataattttgatttattttCcccaatttcagttccattag	4	8	1	1			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	8	30705430	30705430	C	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.1104	p.G368	0.005	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	490	0	0	254	104	29.05	-	-	-	T	30705430	C	T	30705430	2	4	543	1	0	0	0	0	0	0	0	1	15874	842	30	2		2	TEX15	8	30705430	Silent	SNP	C	TCGA-BH-A0H3-01A-11D-A12Q-09	2320359	30705430	115658592	8	47635										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0	0	1	0	NA	0	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	131	0	0	104	32	23.53	-	-	-	-	8111434	CA	-	8111433	8	5	543	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-BH-A0H3-01A-11D-A12Q-09		8111433	127423314	9	47636										
NUP160	0	genome.wustl.edu	37	chr11	47804690	47804690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atattctgacaccaaatccaCagcttcttctaaaaggtcat	4	11	4	1			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	11	47804690	47804690	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.4051	p.V1351M	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	516	0	0	348	101	22.49	-	-	-	T	47804690	C	T	47804690	3	4	543	1	0	0	0	0	1	0	0	0	10830	478	17	4	271	4	NUP160	11	47804690	Missense_Mutation	SNP	C	TCGA-BH-A0H3-01A-11D-A12Q-09		47804690	87201826	10	47637										
PPP1R13B	0	genome.wustl.edu	37	chr14	104206651	104206651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctttttcaggggccggggcGcgttggccagcttcctgcgg	17	12	1	0			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	14	104206651	104206651	G	A	SNP	PPP1R13B	ENST00000202556	human	ensembl	69_37n	-1	known	missense	c.2102	p.A701V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	57	0	0	46	14	23.33	-	-	-	A	104206651	G	A	104206651	3	1	543	1	0	0	0	0	1	0	0	0	12434	1087	38	1	1194	1	PPP1R13B	14	104206651	Missense_Mutation	SNP	G	TCGA-BH-A0H3-01A-11D-A12Q-09		104206651	3142889	11	47638										
NCOR1	0	genome.wustl.edu	37	chr17	16012217	16012217	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atctcgctcttcacgaggttTtcgtgaagtctaaaggagga	11	8	4	1			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	17	16012217	16012217	T	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.2065	p.K689*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	273	0	0	129	142	52.4	-	-	-	A	16012217	T	A	16012217	4	1	543	1	0	0	0	0	0	1	0	0	10307	1850	64	5	5369	5	NCOR1	17	16012217	Nonsense_Mutation	SNP	T	TCGA-BH-A0H3-01A-11D-A12Q-09		16012217	65182993	12	47639										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	CC													0	0	1	0	NA	0	1	1	0	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	21	36252994	36252995	-	CC	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	227	0	0	165	43	20.67	-	-	-	CC	36252995	-	CC	36252994	7	5	543	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-BH-A0H3-01A-11D-A12Q-09		36252994	11876901	13	47640										
DDX17	0	genome.wustl.edu	37	chr22	38890089	38890089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttgtctccacaaatattattGttttgttttccttttcagcc	4	9	2	0			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	22	38890089	38890089	G	T	SNP	DDX17	ENST00000396821	human	ensembl	69_37n	-1	known	missense	c.1262	p.T421K	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201	361	1	0.28	198	49	19.84	-	-	-	T	38890089	G	T	38890089	3	4	543	1	0	0	0	0	1	0	0	0	4375	1377	48	4	953	4	DDX17	22	38890089	Missense_Mutation	SNP	G	TCGA-BH-A0H3-01A-11D-A12Q-09		38890089	12414477	14	47641										
HRNR	0	genome.wustl.edu	37	chr1	152191465	152191465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	gatccagagccatgtcggccGcggcccgaagcgtgatggga	16	12	0	2			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	1	152191465	152191465	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.2640	p.R880	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	65	0	0	108	15	12.1	-	-	-	A	152191465	G	A	152191465	2	1	544	1	0	0	0	0	0	0	0	1	7410	1074	38	1		1	HRNR	1	152191465	Silent	SNP	G	TCGA-BH-A0H5-01A-21D-A10Y-09		152191465	97059156	1	47642										
SHARPIN	0	genome.wustl.edu	37	chr8	145154289	145154289	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	acacacaggcaccgtccgatGacccagcgttgcacggctgg	12	15	0	1			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	8	145154289	145154289	G	A	SNP	SHARPIN	ENST00000398712	human	ensembl	69_37n	-1	known	silent	c.813	p.V271	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	18	0	0	63	9	12.5	-	-	-	A	145154289	G	A	145154289	2	1	544	1	0	0	0	0	0	0	0	1	14356	1277	45	2		2	SHARPIN	8	145154289	Silent	SNP	G	TCGA-BH-A0H5-01A-21D-A10Y-09		145154289	1209733	2	47643										
GRIN2B	0	genome.wustl.edu	37	chr12	13764692	13764692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	gaggcacctgttataacccaCagggctgaagtactcaaaga	10	10	1	2			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	12	13764692	13764692	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1747	p.V583L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	82	0	0	77	9	10.47	-	-	-	G	13764692	C	G	13764692	3	3	544	1	0	0	0	0	1	0	0	0	6831	478	17	4	2731	4	GRIN2B	12	13764692	Missense_Mutation	SNP	C	TCGA-BH-A0H5-01A-21D-A10Y-09		13764692	120087203	3	47644										
COL4A2	0	genome.wustl.edu	37	chr13	111138169	111138169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	gaattacgggattcccaggaTtcataggaagccgggtgagt	14	7	1	1			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	13	111138169	111138169	T	C	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.3193	p.F1065L	0.077	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	33	0	0	32	4	11.11	-	-	-	C	111138169	T	C	111138169	3	2	544	1	0	0	0	0	1	0	0	0	3720	1493	52	5	3323	5	COL4A2	13	111138169	Missense_Mutation	SNP	T	TCGA-BH-A0H5-01A-21D-A10Y-09		111138169	4031709	4	47645										
TBX4	0	genome.wustl.edu	37	chr17	59557513	59557513	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	gctcatctccccccagctctCagccacaccggacgtgggcc	9	20	3	0			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	59557513	59557513	C	T	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	1	known	missense	c.854	p.S285L	0.181	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	42	0	0	52	11	17.46	-	-	-	T	59557513	C	T	59557513	3	4	544	1	0	0	0	0	1	0	0	0	15755	838	29	2	880	2	TBX4	17	59557513	Missense_Mutation	SNP	C	TCGA-BH-A0H5-01A-21D-A10Y-09		59557513	21637697	5	47646										
PITPNC1	0	genome.wustl.edu	37	chr17	65665709	65665709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	2	0.317828468483368	3.625	0	4.53125	0.333333333333333	0.930327025915261	0	tcatcagcctatcatgtgctCctacaagctggtgactgtga	9	11	3	2			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	65665709	65665709	C	T	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	1	known	missense	c.548	p.S183F	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	119	0	0	133	23	14.56	-	-	-	T	65665709	C	T	65665709	3	4	544	1	0	0	0	0	1	0	0	0	12023	855	30	2	574	2	PITPNC1	17	65665709	Missense_Mutation	SNP	C	TCGA-BH-A0H5-01A-21D-A10Y-09	6108196	65665709	15529501	6	47647										
GBP6	0	genome.wustl.edu	37	chr1	89843685	89843685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	gaccctaagaatgactcctgGatctttgccctggctgtgct	10	12	1	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	1	89843685	89843685	G	T	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	missense	c.342	p.W114C	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	194	0	0	160	72	30.9	-	-	-	T	89843685	G	T	89843685	3	4	545	1	0	0	0	0	1	0	0	0	6328	1183	41	2	352	2	GBP6	1	89843685	Missense_Mutation	SNP	G	TCGA-BH-A0H6-01A-21W-A071-09		89843685	159406936	1	47648										
INO80B	0	genome.wustl.edu	37	chr2	74684835	74684835	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	cggccatccccctcaggcccGccgccgcgctgctctgtccc	10	23	2	0			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	2	74684835	74684835	G	C	SNP	INO80B	ENST00000452361	human	ensembl	69_37n	1	known	silent	c.915	p.P305	0.002	pfam_Znf_HIT	pfam_PAPA1,pfam_Znf_HIT	-	no_errors	INO80B	HGNC	ENSG00000115274	23	0	0	16	11	40.74	-	-	-	C	74684835	G	C	74684835	2	2	545	1	0	0	0	0	0	0	0	1	7801	1074	38	3		3	INO80B	2	74684835	Silent	SNP	G	TCGA-BH-A0H6-01A-21W-A071-09		74684835	168514538	2	47649										
GULP1	0	genome.wustl.edu	37	chr2	189405977	189405977	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ataaaactgacaagaggataTtcactttcatatgcaaagat	6	6	2	3			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	2	189405977	189405977	T	C	SNP	GULP1	ENST00000359135	human	ensembl	69_37n	1	known	missense	c.331	p.F111L	1.000	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	GULP1	HGNC	ENSG00000144366	127	0	0	108	93	46.27	-	-	-	C	189405977	T	C	189405977	3	2	545	1	0	0	0	0	1	0	0	0	6952	1493	52	5	349	5	GULP1	2	189405977	Missense_Mutation	SNP	T	TCGA-BH-A0H6-01A-21W-A071-09	114721142	189405977	53793396	3	47650										
CACNA1D	0	genome.wustl.edu	37	chr3	53844194	53844194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	gcagcctgccgtccctgcacCgcagctcctggtacacagac	10	18	0	1			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	3	53844194	53844194	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.6121	p.R2041C	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	48	0	0	23	11	32.35	-	-	-	T	53844194	C	T	53844194	3	4	545	1	0	0	0	0	1	0	0	0	2566	652	23	1	6419	1	CACNA1D	3	53844194	Missense_Mutation	SNP	C	TCGA-BH-A0H6-01A-21W-A071-09		53844194	144178236	4	47651										
GAP43	0	genome.wustl.edu	37	chr3	115395170	115395170	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	tccttccgaggagaagaaggGggagggtgatgctgccacag	17	8	0	3			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	3	115395170	115395170	G	T	SNP	GAP43	ENST00000305124	human	ensembl	69_37n	1	known	missense	c.341	p.G114V	0.106	pfam_Neuromodulin_C	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	111	1	0.89	57	30	34.48	-	-	-	T	115395170	G	T	115395170	3	4	545	1	0	0	0	0	1	0	0	0	6285	1232	43	4	489	4	GAP43	3	115395170	Missense_Mutation	SNP	G	TCGA-BH-A0H6-01A-21W-A071-09	61550976	115395170	82627260	5	47652										
UGT2A1	0	genome.wustl.edu	37	chr4	70504971	70504971	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	atcacagagttgtatgttaaTttgaaagaaagtgtctagaa	9	3	2	4			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	4	70504971	70504971	T	A	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	missense	c.388	p.I130F	0.001	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	256	0	0	195	112	36.48	-	-	-	A	70504971	T	A	70504971	3	1	545	1	0	0	0	0	1	0	0	0	17050	1493	52	5		5	UGT2A1	4	70504971	Missense_Mutation	SNP	T	TCGA-BH-A0H6-01A-21W-A071-09		70504971	120649305	6	47653										
DNAH8	0	genome.wustl.edu	37	chr6	38851106	38851106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ctatgattgcaggctgttttGctcacaggagagcagggaac	13	8	1	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	6	38851106	38851106	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.7359	p.L2453	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	300	0	0	262	156	37.32	-	-	-	A	38851106	G	A	38851106	2	1	545	1	0	0	0	0	0	0	0	1	4642	1310	46	4		4	DNAH8	6	38851106	Silent	SNP	G	TCGA-BH-A0H6-01A-21W-A071-09		38851106	132263961	7	47654										
RUNX1T1	0	genome.wustl.edu	37	chr8	92972572	92972572	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ctcccagccccgctgttgggCgtgacagaggagctgactgc	14	14	0	3			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	8	92972572	92972572	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	silent	c.1746	p.T582	0.850	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	43	0	0	118	51	29.48	-	-	-	T	92972572	C	T	92972572	2	4	545	1	0	0	0	0	0	0	0	1	13833	755	27	1		1	RUNX1T1	8	92972572	Silent	SNP	C	TCGA-BH-A0H6-01A-21W-A071-09		92972572	53391450	8	47655										
ABO	0	genome.wustl.edu	37	chr9	136131313	136131314	+	RNA	INS	-	-	C													0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	tgcaccgaccccccgaagaaINScccccccaggtagtagaaat							TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	9	136131313	136131314	-	C	INS	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.116:0.001	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	29	0	0	27	3	10	-	-	-	C	136131314	-	C	136131313	6	5	545	0	1	1	1	0	0	0	0	0	97	43	2	0		0	ABO	9	136131313	RNA	INS	-	TCGA-BH-A0H6-01A-21W-A071-09		136131313	5082118	9	47656										
LMBR1L	0	genome.wustl.edu	37	chr12	49496159	49496159	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	gcagccagcaggaagtaggaTctgagggcagagaagatggt	17	6	1	3			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	12	49496159	49496159	T	A	SNP	LMBR1L	ENST00000267102	human	ensembl	69_37n	-1	known	missense	c.770	p.N257I	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1L	HGNC	ENSG00000139636	96	0	0	75	44	36.97	-	-	-	A	49496159	T	A	49496159	3	1	545	1	0	0	0	0	1	0	0	0	8897	1449	50	5	731	5	LMBR1L	12	49496159	Missense_Mutation	SNP	T	TCGA-BH-A0H6-01A-21W-A071-09		49496159	84355736	10	47657										
SACS	0	genome.wustl.edu	37	chr13	23930148	23930148	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ctaaagatacaaggaacatcTgtaaagaaaaatttaagtca	6	5	2	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	13	23930148	23930148	T	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	splice_site	c.605-2	e7-2	1.000	-	-	-	no_errors	SACS	HGNC	ENSG00000151835	68	0	0	45	24	34.78	-	-	-	G	23930148	T	G	23930148	5	3	545	1	0	0	0	0	0	0	1	0	13890	1594	55	5	13148	5	SACS	13	23930148	Splice_Site	SNP	T	TCGA-BH-A0H6-01A-21W-A071-09		23930148	91239730	11	47658										
SMCHD1	0	genome.wustl.edu	37	chr18	2700752	2700752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	gctttgactggtgtactcctCctaagaagagagggcttgca	12	9	0	3			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	18	2700752	2700752	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.1483	p.P495S	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	101	0	0	27	48	64	-	-	-	T	2700752	C	T	2700752	3	4	545	1	0	0	0	0	1	0	0	0	14877	855	30	2	1529	2	SMCHD1	18	2700752	Missense_Mutation	SNP	C	TCGA-BH-A0H6-01A-21W-A071-09		2700752	75376496	12	47659										
ZNF45	0	genome.wustl.edu	37	chr19	44419341	44419341	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	aagagtctccatctcttttaGattcttggctcctaaaagga	7	9	3	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	19	44419341	44419341	G	A	SNP	ZNF45	ENST00000269973	human	ensembl	69_37n	-1	known	silent	c.247	p.L83	0.021	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC	ENSG00000124459	105	0	0	58	42	42	-	-	-	A	44419341	G	A	44419341	2	1	545	1	0	0	0	0	0	0	0	1	18017	933	33	2		2	ZNF45	19	44419341	Silent	SNP	G	TCGA-BH-A0H6-01A-21W-A071-09		44419341	14709642	13	47660										
CHGB	0	genome.wustl.edu	37	chr20	5903619	5903619	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ccacctctgaggtggacaaaCgacgcacgaggcccagacac	11	15	1	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	20	5903619	5903619	C	T	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	nonsense	c.829	p.R277*	0.979	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	88	0	0	38	31	44.29	-	-	-	T	5903619	C	T	5903619	4	4	545	1	0	0	0	0	0	1	0	0	3368	528	19	1	843	1	CHGB	20	5903619	Nonsense_Mutation	SNP	C	TCGA-BH-A0H6-01A-21W-A071-09		5903619	57121901	14	47661										
ABCG1	0	genome.wustl.edu	37	chr21	43693544	43693544	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	cactgtgcaggaggccatgaTggtgagctccgccctgcccc	13	15	0	2			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	21	43693544	43693544	T	A	SNP	ABCG1	ENST00000398437	human	ensembl	69_37n	1	known	missense	c.974	p.M325K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	25	0	0	11	7	38.89	-	-	-	A	43693544	T	A	43693544	3	1	545	1	0	0	0	0	1	0	0	0	68	1478	51	5	718	5	ABCG1	21	43693544	Missense_Mutation	SNP	T	TCGA-BH-A0H6-01A-21W-A071-09		43693544	4436351	15	47662										
EWSR1	0	genome.wustl.edu	37	chr22	29668221	29668221	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	ctagattacagtacctatagCcaagctgcagcgcagcaggg							TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	29668221	29668221	C	-	DEL	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	frame_shift_del	c.30	p.Q11fs	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	112	0	0	65	36	35.64	-	-	-	-	29668221	C	-	29668221	7	5	545	1	0	1	0	1	0	0	0	0	5332	738	26	0	36	0	EWSR1	22	29668221	Frame_Shift_Del	DEL	C	TCGA-BH-A0H6-01A-21W-A071-09		29668221	21636345	16	47663										
SCUBE1	0	genome.wustl.edu	37	chr22	43603586	43603586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957674047556388	0.844387755102041	0	0.965014577259475	1	1	0	aggcgtacaggcgcccatcgCgcacgatgtcctctatgagt	12	13	1	1			TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	43603586	43603586	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	69_37n	-1	known	missense	c.2768	p.R923H	0.980	NULL	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	12	0	0	10	8	44.44	-	-	-	T	43603586	C	T	43603586	3	4	545	1	0	0	0	0	1	0	0	0	14032	768	27	1	206	1	SCUBE1	22	43603586	Missense_Mutation	SNP	C	TCGA-BH-A0H6-01A-21W-A071-09	13935365	43603586	7700980	17	47664										
HOOK1	0	genome.wustl.edu	37	chr1	60328544	60328544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	aaggttccaagtctgaaggcGaaagtgtaagtaacttagaa	11	5	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	1	60328544	60328544	G	A	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.1621	p.E541K	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	236	0	0	140	39	21.79	-	-	-	A	60328544	G	A	60328544	3	1	546	1	0	0	0	0	1	0	0	0	7333	1059	37	1	1683	1	HOOK1	1	60328544	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		60328544	188922077	1	47665										
DYRK3	0	genome.wustl.edu	37	chr1	206820860	206820860	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tattcagtcagatggcatcaGtgactctgaaaaatgctctc	8	9	5	3			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	1	206820860	206820860	G	T	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	missense	c.317	p.S106I	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	358	0	0	465	87	15.76	-	-	-	T	206820860	G	T	206820860	3	4	546	1	0	0	0	0	1	0	0	0	4892	1029	36	4	348	4	DYRK3	1	206820860	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	146492316	206820860	42429761	2	47666										
OR2T35	0	genome.wustl.edu	37	chr1	248801953	248801954	+	Frame_Shift_Ins	INS	-	-	T													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ataagcagcatcagcacgcaINSgcaggcatacatcagggtct							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	1	248801953	248801954	-	T	INS	OR2T35	ENST00000317450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.607_606	p.C202fs	0.101:0.095	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T35	HGNC	ENSG00000177151	8	0	0	10	4	28.57	-	-	-	T	248801954	-	T	248801953	7	5	546	1	0	1	1	0	0	0	0	0	11099	188	7	0	368	0	OR2T35	1	248801953	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	41981093	248801953	448668	3	47667										
PXDN	0	genome.wustl.edu	37	chr2	1652010	1652010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggtcctcgaacgtgtgtgccGccgatagattgcagtagacc	13	11	0	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	1652010	1652010	G	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.3542	p.A1181V	0.736	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	126	1	0.79	24	40	62.5	-	-	-	A	1652010	G	A	1652010	3	1	546	1	0	0	0	0	1	0	0	0	12930	1087	38	1	925	1	PXDN	2	1652010	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		1652010	241547363	4	47668										
ZNF513	0	genome.wustl.edu	37	chr2	27600657	27600657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgtgtgccgcagcatgtgacGtttgaggttcatgctctggt	14	8	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	2	27600657	27600657	G	A	SNP	ZNF513	ENST00000323703	human	ensembl	69_37n	-1	known	missense	c.1381	p.R461C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795	52	0	0	70	9	11.39	-	-	-	A	27600657	G	A	27600657	3	1	546	1	0	0	0	0	1	0	0	0	18054	1145	40	1	248	1	ZNF513	2	27600657	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	25948647	27600657	215598716	5	47669										
THUMPD2	0	genome.wustl.edu	37	chr2	39983082	39983082	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tccaagtccacacattggatCtaaaacaaatgcaccagcct	5	13	1	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	39983082	39983082	C	T	SNP	THUMPD2	ENST00000505747	human	ensembl	69_37n	-1	known	missense	c.910	p.D304N	1.000	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_THUMP,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD2	HGNC	ENSG00000138050	109	0	0	81	15	15.62	-	-	-	T	39983082	C	T	39983082	3	4	546	1	0	0	0	0	1	0	0	0	15978	913	32	2	617	2	THUMPD2	2	39983082	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	12382425	39983082	203216291	6	47670										
USP34	0	genome.wustl.edu	37	chr2	61417673	61417673	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ctttagaaggaaatgtgtcaTgaacgtgtagacaatgttgt	11	4	1	3			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	61417673	61417673	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.9709	p.M3237V	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	98	0	0	80	16	16.67	-	-	-	C	61417673	T	C	61417673	3	2	546	1	0	0	0	0	1	0	0	0	17162	1464	51	5	947	5	USP34	2	61417673	Missense_Mutation	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09	21434591	61417673	181781700	7	47671										
SPR	0	genome.wustl.edu	37	chr2	73118645	73118645	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gagttcaagtctggagcccaCgtggacttctatgacaaata	10	9	3	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	2	73118645	73118645	C	T	SNP	SPR	ENST00000234454	human	ensembl	69_37n	1	known	silent	c.765	p.H255	0.713	tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096	80	0	0	69	19	21.59	-	-	-	T	73118645	C	T	73118645	2	4	546	1	0	0	0	0	0	0	0	1	15182	535	19	1		1	SPR	2	73118645	Silent	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	11700972	73118645	170080728	8	47672										
POTEF	0	genome.wustl.edu	37	chr2	130832165	130832165	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	aggaagcaaggctggaagagCgcctcggggcagcggaaccg	18	10	0	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	130832165	130832165	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2880	p.A960	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	21	0	0	21	7	25	-	-	-	T	130832165	C	T	130832165	2	4	546	1	0	0	0	0	0	0	0	1	12339	755	27	1		1	POTEF	2	130832165	Silent	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	57713520	130832165	112367208	9	47673										
SPAG16	0	genome.wustl.edu	37	chr2	214215282	214215282	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	cattatgcatcttatgaaccGactataagggtgttacatga	8	7	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	214215282	214215282	G	A	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	silent	c.675	p.P225	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	297	0	0	227	84	26.92	-	-	-	A	214215282	G	A	214215282	2	1	546	1	0	0	0	0	0	0	0	1	15069	1045	37	1		1	SPAG16	2	214215282	Silent	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	83383117	214215282	28984091	10	47674										
TNS1	0	genome.wustl.edu	37	chr2	218696257	218696258	+	Frame_Shift_Ins	INS	-	-	G													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggggtgtcttggccagacccINSgggggggaccgcactgtgcc							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	2	218696257	218696258	-	G	INS	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2919_2918	p.L975fs	0.910:1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	16	0	0	11	2	15.38	-	-	-	G	218696258	-	G	218696257	7	5	546	1	0	1	1	0	0	0	0	0	16438	639	23	0	2344	0	TNS1	2	218696257	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	4480975	218696257	24503116	11	47675										
TRAIP	0	genome.wustl.edu	37	chr3	49878478	49878478	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gccacctcccctgaggccttCcgtgcctcttttagattctc	7	17	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	3	49878478	49878478	C	A	SNP	TRAIP	ENST00000331456	human	ensembl	69_37n	-1	known	silent	c.645	p.R215	1.000	superfamily_Prefoldin	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763	175	0	0	39	60	60.61	-	-	-	A	49878478	C	A	49878478	2	1	546	1	0	0	0	0	0	0	0	1	16544	842	30	2		2	TRAIP	3	49878478	Silent	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		49878478	148143952	12	47676										
PBRM1	0	genome.wustl.edu	37	chr3	52584437	52584438	+	Frame_Shift_Ins	INS	-	-	T													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tatttagaaggaatcttaccINStgccagtgtctgatcccact							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	3	52584437	52584438	-	T	INS	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4897_4896	p.A1632fs	1.000:1.000	NULL	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	62	0	0	32	4	11.11	-	-	-	T	52584438	-	T	52584437	7	5	546	1	0	1	1	0	0	0	0	0	11564	695	24	0	180	0	PBRM1	3	52584437	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	2705959	52584437	145437993	13	47677										
SKIL	0	genome.wustl.edu	37	chr3	170078760	170078760	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	actgggcatacttccattcaAtgccccatcctgtgggctga	9	13	1	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	3	170078760	170078760	A	G	SNP	SKIL	ENST00000259119	human	ensembl	69_37n	1	known	missense	c.641	p.N214S	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	80	0	0	118	18	13.24	-	-	-	G	170078760	A	G	170078760	3	3	546	1	0	0	0	0	1	0	0	0	14447	101	4	5	643	5	SKIL	3	170078760	Missense_Mutation	SNP	A	TCGA-BH-A0H7-01A-13W-A071-09	117494323	170078760	27943670	14	47678										
SLC10A4	0	genome.wustl.edu	37	chr4	48490772	48490773	+	Frame_Shift_Del	DEL	TT	TT	-													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ccagtctgcagaagcggggaTttttgttttaatctataaaa							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	4	48490772	48490773	TT	-	DEL	SLC10A4	ENST00000273861	human	ensembl	69_37n	1	known	frame_shift_del	c.1130_1131	p.F378fs	0.635:0.497	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248	37	0	0	45	27	37.5	-	-	-	-	48490773	TT	-	48490772	7	5	546	1	0	1	0	1	0	0	0	0	14465	1493	52	0	1140	0	SLC10A4	4	48490772	Frame_Shift_Del	DEL	TT	TCGA-BH-A0H7-01A-13W-A071-09		48490772	142663504	15	47679	385	2								
SLC10A4	0	genome.wustl.edu	37	chr4	48490777	48490778	+	In_Frame_Ins	INS	-	-	ACA													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgcagaagcggggatttttgINSttttaatctataaaatgtat							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	4	48490777	48490778	-	ACA	INS	SLC10A4	ENST00000273861	human	ensembl	69_37n	1	known	in_frame_ins	c.1135_1136	p.V379in_frame_insDI	1.000:1.000	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248	38	0	0	35	27	43.55	-	-	-	ACA	48490778	-	ACA	48490777	7	5	546	1	0	1	1	0	0	0	0	0	14465	1377	48	0	1145	0	SLC10A4	4	48490777	In_Frame_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	5	48490777	142663499	16	47680	385	2								
SEC24B	0	genome.wustl.edu	37	chr4	110394171	110394171	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tctcttcagttgcagattctTtatcctgtcctgttatgcaa	6	10	3	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	4	110394171	110394171	T	G	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.889	p.L297V	0.697	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	229	0	0	140	39	21.79	-	-	-	G	110394171	T	G	110394171	3	3	546	1	0	0	0	0	1	0	0	0	14083	1838	64	5	899	5	SEC24B	4	110394171	Missense_Mutation	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09	61903394	110394171	80760105	17	47681										
LARP7	0	genome.wustl.edu	37	chr4	113578482	113578483	+	Frame_Shift_Ins	INS	-	-	A													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	agattttctgaatatgattgINSaaaaaaaaaacagttcacct							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	4	113578482	113578483	-	A	INS	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	frame_shift_ins	c.1748_1749	p.*584fs	0.998:1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	28	0	0	25	3	10.71	-	-	-	A	113578483	-	A	113578482	7	5	546	1	0	1	1	0	0	0	0	0	8687	1285	45	0	1794	0	LARP7	4	113578482	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	3184311	113578482	77575794	18	47682										
EMB	0	genome.wustl.edu	37	chr5	49707043	49707043	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	atactcacctgtattgggtaTacaaggtgcttcctgttgca	9	9	1	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	5	49707043	49707043	T	C	SNP	EMB	ENST00000303221	human	ensembl	69_37n	-1	known	missense	c.371	p.Y124C	0.001	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	EMB	HGNC	ENSG00000170571	399	0	0	340	60	15	-	-	-	C	49707043	T	C	49707043	3	2	546	1	0	0	0	0	1	0	0	0	5122	1406	49	5	640	5	EMB	5	49707043	Missense_Mutation	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09		49707043	131208217	19	47683										
HOMER1	0	genome.wustl.edu	37	chr5	78742884	78742884	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgatatacccacctgtgaagGtgtactggtaagttccatct	9	9	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	5	78742884	78742884	G	C	SNP	HOMER1	ENST00000334082	human	ensembl	69_37n	-1	known	missense	c.379	p.P127A	1.000	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413	114	0	0	90	20	18.18	-	-	-	C	78742884	G	C	78742884	3	2	546	1	0	0	0	0	1	0	0	0	7329	1261	44	4	709	4	HOMER1	5	78742884	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	29035841	78742884	102172376	20	47684										
CHSY3	0	genome.wustl.edu	37	chr5	129520729	129520729	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ttcctctcatcggaaggtatGacattttcttgagattcatg	8	8	3	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	5	129520729	129520729	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	missense	c.1894	p.D632N	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	74	0	0	132	28	17.5	-	-	-	A	129520729	G	A	129520729	3	1	546	1	0	0	0	0	1	0	0	0	3442	1290	45	2	1904	2	CHSY3	5	129520729	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	50777845	129520729	51394531	21	47685										
GRXCR2	0	genome.wustl.edu	37	chr5	145239466	145239466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gtgaaaacagctgtcctcggGaatatccccttcctgcaaga	9	12	0	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	5	145239466	145239466	G	A	SNP	GRXCR2	ENST00000377976	human	ensembl	69_37n	-1	known	missense	c.577	p.P193S	0.293	NULL	NULL	-	no_errors	GRXCR2	HGNC	ENSG00000204928	84	0	0	90	53	36.81	-	-	-	A	145239466	G	A	145239466	3	1	546	1	0	0	0	0	1	0	0	0	6864	1174	41	2	173	2	GRXCR2	5	145239466	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	15718737	145239466	35675794	22	47686										
MIOS	0	genome.wustl.edu	37	chr7	7636043	7636043	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgtcgaaaaccacttcctcgAtgtgcgctttgtctcattaa	7	11	1	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	7636043	7636043	A	T	SNP	MIOS	ENST00000340080	human	ensembl	69_37n	1	known	silent	c.2352	p.R784	1.000	NULL	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654	279	0	0	227	71	23.83	-	-	-	T	7636043	A	T	7636043	2	4	546	1	0	0	0	0	0	0	0	1	9660	320	12	5		5	MIOS	7	7636043	Silent	SNP	A	TCGA-BH-A0H7-01A-13W-A071-09		7636043	151502620	23	47687										
DGKB	0	genome.wustl.edu	37	chr7	14216525	14216525	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ttggcagagacttgctcgtcCtgggggaaaatatttcattg	12	7	1	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	14216525	14216525	C	T	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	splice_site	c.2247-1	e24-1	1.000	-	-	-	no_errors	DGKB	HGNC	ENSG00000136267	589	0	0	378	82	17.79	-	-	-	T	14216525	C	T	14216525	5	4	546	1	0	0	0	0	0	0	1	0	4502	695	24	4	191	4	DGKB	7	14216525	Splice_Site	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	6580482	14216525	144922138	24	47688										
FAM188B	0	genome.wustl.edu	37	chr7	30898940	30898941	+	Frame_Shift_Del	DEL	TG	TG	-													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	cctgtccaggtctacagagcTgtgagtatctttctccctca							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	7	30898940	30898941	TG	-	DEL	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	frame_shift_del	c.1745	p.L582fs	0.997	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	23	0	0	47	52	52.53	-	-	-	-	30898941	TG	-	30898940	7	5	546	1	0	1	0	1	0	0	0	0	5556	1594	55	0	1795	0	FAM188B	7	30898940	Frame_Shift_Del	DEL	TG	TCGA-BH-A0H7-01A-13W-A071-09	16682415	30898940	128239723	25	47689										
FGL2	0	genome.wustl.edu	37	chr7	76826243	76826243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	aggtgtaactctgtaggtctCactgcttcttttgcctattg	9	9	3	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	76826243	76826243	C	G	SNP	FGL2	ENST00000248598	human	ensembl	69_37n	-1	known	missense	c.673	p.E225Q	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGL2	HGNC	ENSG00000127951	209	0	0	173	30	14.71	-	-	-	G	76826243	C	G	76826243	3	3	546	1	0	0	0	0	1	0	0	0	5919	835	29	2	650	2	FGL2	7	76826243	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	45927303	76826243	82312420	26	47690										
CCDC146	0	genome.wustl.edu	37	chr7	76871096	76871096	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	agtttcacctgcagcaagctGataattttccagaagcattc	7	10	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	76871096	76871096	G	C	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	missense	c.328	p.D110H	0.951	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	227	0	0	177	32	15.31	-	-	-	C	76871096	G	C	76871096	3	2	546	1	0	0	0	0	1	0	0	0	2805	1290	45	2	338	2	CCDC146	7	76871096	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	44853	76871096	82267567	27	47691										
MOGAT3	0	genome.wustl.edu	37	chr7	100839208	100839208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ccttgggctcaggggctcagCgaaaggccgcggccaggcct	16	14	2	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	100839208	100839208	C	T	SNP	MOGAT3	ENST00000379423	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.000	NULL	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	37	0	0	16	7	30.43	-	-	-	T	100839208	C	T	100839208	3	4	546	1	0	0	0	0	1	0	0	0	9768	783	27	1		1	MOGAT3	7	100839208	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	23968112	100839208	58299455	28	47692										
GIMAP6	0	genome.wustl.edu	37	chr7	150324841	150324841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tccccagcaggcatctgtggGcttcctcagattccttctgg	10	14	3	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	7	150324841	150324841	G	A	SNP	GIMAP6	ENST00000328902	human	ensembl	69_37n	-1	known	missense	c.845	p.A282V	0.000	NULL	pfam_AIG1	-	no_errors	GIMAP6	HGNC	ENSG00000133561	248	0	0	145	52	26.4	-	-	-	A	150324841	G	A	150324841	3	1	546	1	0	0	0	0	1	0	0	0	6435	1203	42	4	37	4	GIMAP6	7	150324841	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	49485633	150324841	8813822	29	47693										
C8orf34	0	genome.wustl.edu	37	chr8	69434116	69434116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	agaagaaaatgatgctgatcCcctagctgctgaaatgctac	9	9	0	5			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	8	69434116	69434116	C	T	SNP	C8orf34	ENST00000518698	human	ensembl	69_37n	1	known	missense	c.848	p.P283L	0.998	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084	241	0	0	421	64	13.17	-	-	-	T	69434116	C	T	69434116	3	4	546	1	0	0	0	0	1	0	0	0	2446	623	22	4	533	4	C8orf34	8	69434116	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		69434116	76929906	30	47694										
PLEKHF2	0	genome.wustl.edu	37	chr8	96166776	96166776	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	cagaaagcaaaattcacaccTgttaatcgtcgccaccattg	6	12	1	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	8	96166776	96166776	T	C	SNP	PLEKHF2	ENST00000315367	human	ensembl	69_37n	1	known	silent	c.504	p.P168	0.996	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895	190	0	0	591	102	14.7	-	-	-	C	96166776	T	C	96166776	2	2	546	1	0	0	0	0	0	0	0	1	12141	1567	55	5		5	PLEKHF2	8	96166776	Silent	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09	26732660	96166776	50197246	31	47695										
ATAD2	0	genome.wustl.edu	37	chr8	124381414	124381414	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggctttctctggtgacgaggTtctaaaaaaaagaaatatat	9	5	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	8	124381414	124381414	T	C	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	silent	c.933	p.K311	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	130	0	0	256	41	13.8	-	-	-	C	124381414	T	C	124381414	2	2	546	1	0	0	0	0	0	0	0	1	1075	1739	60	5		5	ATAD2	8	124381414	Silent	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09	28214638	124381414	21982608	32	47696										
COL22A1	0	genome.wustl.edu	37	chr8	139638436	139638436	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ttataaaagccacttactggGattccgggtaatccagatgg	10	8	0	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	8	139638436	139638436	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	silent	c.3714	p.I1238	0.993	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	316	0	0	607	166	21.47	-	-	-	A	139638436	G	A	139638436	2	1	546	1	0	0	0	0	0	0	0	1	3711	1164	41	2		2	COL22A1	8	139638436	Silent	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	15257022	139638436	6725586	33	47697										
CA9	0	genome.wustl.edu	37	chr9	35676375	35676375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gaggcctggccgtgttggccGcctttctggaggtaccagat	15	11	1	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	9	35676375	35676375	G	T	SNP	CA9	ENST00000378357	human	ensembl	69_37n	1	known	missense	c.829	p.A277S	0.874	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	106	0	0	88	24	21.43	-	-	-	T	35676375	G	T	35676375	3	4	546	1	0	0	0	0	1	0	0	0	2549	1087	38	3	847	3	CA9	9	35676375	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		35676375	105537056	34	47698										
FAM75A3	0	genome.wustl.edu	37	chr9	40705542	40705542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gcatgcctactgggaacatgCgggcttcccaggagctacat	12	12	0	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	9	40705542	40705542	C	T	SNP	FAM75A3	ENST00000356699	human	ensembl	69_37n	1	known	missense	c.3199	p.R1067W	0.000	NULL	NULL	-	no_errors	FAM75A3	HGNC	ENSG00000147926	140	1	0.71	19	15	44.12	-	-	-	T	40705542	C	T	40705542	3	4	546	1	0	0	0	0	1	0	0	0	5666	759	27	1	3213	1	FAM75A3	9	40705542	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	5029167	40705542	100507889	35	47699										
LHX6	0	genome.wustl.edu	37	chr9	124971974	124971974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gtgtaaggcagccggcagtgCacctgcccgcactgtacctg	13	14	0	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	9	124971974	124971974	C	T	SNP	LHX6	ENST00000482062	human	ensembl	69_37n	-1	putative	missense	c.311	p.C104Y	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,pfscan_Homeodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LHX6	HGNC	ENSG00000106852	12	0	0	8	6	42.86	-	-	-	T	124971974	C	T	124971974	3	4	546	1	0	0	0	0	1	0	0	0	8830	697	25	4	168	4	LHX6	9	124971974	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	84266432	124971974	16241457	36	47700										
QRFP	0	genome.wustl.edu	37	chr9	133769047	133769048	+	Frame_Shift_Ins	INS	-	-	CT													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggcctgtggctgtgaagctcINStcagccaccgagaggaaccc							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	9	133769047	133769048	-	CT	INS	QRFP	ENST00000343079	human	ensembl	69_37n	-1	known	frame_shift_ins	c.179_178	p.R60fs	0.000:0.000	pfam_P518	pfam_P518	-	no_errors	QRFP	HGNC	ENSG00000188710	27	0	0	15	14	48.28	-	-	-	CT	133769048	-	CT	133769047	7	5	546	1	0	1	1	0	0	0	0	0	12960	913	32	0	234	0	QRFP	9	133769047	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	8797073	133769047	7444384	37	47701										
ANK3	0	genome.wustl.edu	37	chr10	61842433	61842433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gctgtttgaggcagtcctttTgttgtctttggttctttcag	11	7	3	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	10	61842433	61842433	T	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	silent	c.4263	p.T1421	0.210	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	354	0	0	208	67	24.28	-	-	-	C	61842433	T	C	61842433	2	2	546	1	0	0	0	0	0	0	0	1	622	1799	63	5		5	ANK3	10	61842433	Silent	SNP	T	TCGA-BH-A0H7-01A-13W-A071-09		61842433	73692314	38	47702										
KCNA4	0	genome.wustl.edu	37	chr11	30033717	30033717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gttcacaacagtcactgtagCggactgaactgtagccgcca	10	12	2	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	11	30033717	30033717	C	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.509	p.R170H	1.000	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	168	0	0	176	109	37.98	-	-	-	T	30033717	C	T	30033717	3	4	546	1	0	0	0	0	1	0	0	0	8059	768	27	1	1456	1	KCNA4	11	30033717	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		30033717	104972799	39	47703										
OR4A15	0	genome.wustl.edu	37	chr11	55135676	55135676	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	cgtctattctactgcatttgCtcccaaaatgattgttgact	6	10	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	11	55135676	55135676	C	A	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.317	p.A106D	0.003	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	479	0	0	323	172	34.75	-	-	-	A	55135676	C	A	55135676	3	1	546	1	0	0	0	0	1	0	0	0	11113	797	28	4	319	4	OR4A15	11	55135676	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	25101959	55135676	79870840	40	47704										
RCOR2	0	genome.wustl.edu	37	chr11	63681584	63681585	+	Frame_Shift_Ins	INS	-	-	CTAT													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tggtggcggtactgagacacINSctggacctcctttttcccag							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	11	63681584	63681585	-	CTAT	INS	RCOR2	ENST00000301459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.733_732	p.V244fs	0.846:0.963	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771	8	0	0	15	7	31.82	-	-	-	CTAT	63681585	-	CTAT	63681584	7	5	546	1	0	1	1	0	0	0	0	0	13266	507	18	0	858	0	RCOR2	11	63681584	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	8545908	63681584	71324932	41	47705										
C1R	0	genome.wustl.edu	37	chr12	7242776	7242777	+	Frame_Shift_Ins	INS	-	-	G													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	acataaattccttctttcccINSggggggttgcccagtggaga							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	12	7242776	7242777	-	G	INS	C1R	ENST00000290575	human	ensembl	69_37n	-1	known	frame_shift_ins	c.342_341	p.K117fs	0.377:1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1R	HGNC	ENSG00000159403	14	0	0	25	3	10.71	-	-	-	G	7242777	-	G	7242776	7	5	546	1	0	1	1	0	0	0	0	0	1991	639	23	0	1532	0	C1R	12	7242776	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09		7242776	126609119	42	47706										
MRPS31	0	genome.wustl.edu	37	chr13	41333178	41333178	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgacttggttgtttgcttatCaaaagggagagaatctgcca	11	6	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	13	41333178	41333178	C	G	SNP	MRPS31	ENST00000323563	human	ensembl	69_37n	-1	known	missense	c.505	p.D169H	1.000	NULL	NULL	-	no_errors	MRPS31	HGNC	ENSG00000102738	173	0	0	64	45	41.28	-	-	-	G	41333178	C	G	41333178	3	3	546	1	0	0	0	0	1	0	0	0	9913	826	29	2	702	2	MRPS31	13	41333178	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		41333178	73836700	43	47707										
NTHL1	0	genome.wustl.edu	37	chr16	2096132	2096133	+	Frame_Shift_Ins	INS	-	-	G													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tggggcccctgcctacctttINSgggggggcactggagtcata							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	16	2096132	2096133	-	G	INS	NTHL1	ENST00000219066	human	ensembl	69_37n	-1	known	frame_shift_ins	c.375_374	p.V127fs	0.794:1.000	superfamily_DNA_glycosylase	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	14	0	0	20	3	13.04	-	-	-	G	2096133	-	G	2096132	7	5	546	1	0	1	1	0	0	0	0	0	10771	1799	63	0	583	0	NTHL1	16	2096132	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09		2096132	88258621	44	47708										
METTL9	0	genome.wustl.edu	37	chr16	21636383	21636383	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	aagtgtcttggagccaactaGaggcagggtcatccttgccc	12	11	2	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	16	21636383	21636383	G	C	SNP	METTL9	ENST00000358154	human	ensembl	69_37n	1	known	missense	c.698	p.R233T	0.996	pfam_DREV_MeTrfase	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	-	no_errors	METTL9	HGNC	ENSG00000197006	96	0	0	86	26	23.21	-	-	-	C	21636383	G	C	21636383	3	2	546	1	0	0	0	0	1	0	0	0	9579	942	33	2	712	2	METTL9	16	21636383	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	19540251	21636383	68718370	45	47709										
ZNF646	0	genome.wustl.edu	37	chr16	31088893	31088894	+	Frame_Shift_Ins	INS	-	-	A													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	tgttcaatgcggctgccctcINSaaaaaccatgtgcgggctca							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	16	31088893	31088894	-	A	INS	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	frame_shift_ins	c.1248_1249	p.N417fs	0.970:0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	8	0	0	10	2	16.67	-	-	-	A	31088894	-	A	31088893	7	5	546	1	0	1	1	0	0	0	0	0	18158	813	29	0	1250	0	ZNF646	16	31088893	Frame_Shift_Ins	INS	-	TCGA-BH-A0H7-01A-13W-A071-09	9452510	31088893	59265860	46	47710										
CCL4L2	0	genome.wustl.edu	37	chr17	34641454	34641454	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gctccttgttctacagattcCaaaccaaaagaggcaagcaa	7	11	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	17	34641454	34641454	C	T	SNP	CCL4L2	ENST00000394465	human	ensembl	69_37n	1	known	nonsense	c.196	p.Q66*	0.873	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL4L2	HGNC	ENSG00000197262	108	0	0	42	9	17.65	-	-	-	T	34641454	C	T	34641454	4	4	546	1	0	0	0	0	0	1	0	0	2933	595	21	4	497	4	CCL4L2	17	34641454	Nonsense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		34641454	46553756	47	47711										
ZNF536	0	genome.wustl.edu	37	chr19	31038893	31038893	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	cactgtgactatgccggcacGcagtcagcatccttaaaata	8	12	1	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	19	31038893	31038893	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.2367	p.T789	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	142	1	0.7	69	50	42.02	-	-	-	A	31038893	G	A	31038893	2	1	546	1	0	0	0	0	0	0	0	1	18070	1074	38	1		1	ZNF536	19	31038893	Silent	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		31038893	28090090	48	47712										
CD22	0	genome.wustl.edu	37	chr19	35827245	35827245	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggtgcagctgaacgtgaagcGtgagtctccccggcatgcct	14	12	1	3			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	19	35827245	35827245	G	A	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	splice_site	c.718+1	e3+1	1.000	-	-	-	no_errors	CD22	HGNC	ENSG00000012124	87	0	0	35	38	52.05	-	-	-	A	35827245	G	A	35827245	5	1	546	1	0	0	0	0	0	0	1	0	3014	1159	40	1	729	1	CD22	19	35827245	Splice_Site	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	4788352	35827245	23301738	49	47713										
RTN2	0	genome.wustl.edu	37	chr19	45997475	45997475	+	Frame_Shift_Del	DEL	A	A	-													0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ttggtccgtgctatcgaggcActgtccccttactggctctc							TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	19	45997475	45997475	A	-	DEL	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	frame_shift_del	c.763	p.C255fs	0.963	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	57	0	0	29	17	36.17	-	-	-	-	45997475	A	-	45997475	7	5	546	1	0	1	0	1	0	0	0	0	13812	159	6	0	906	0	RTN2	19	45997475	Frame_Shift_Del	DEL	A	TCGA-BH-A0H7-01A-13W-A071-09	10170230	45997475	13131508	50	47714										
ANGPT4	0	genome.wustl.edu	37	chr20	865878	865878	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	gcggcgctctggcggctcagCgtgttcagcagcttcgcctt	14	14	3	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	20	865878	865878	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	silent	c.678	p.T226	0.971	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	20	0	0	15	4	21.05	-	-	-	T	865878	C	T	865878	2	4	546	1	0	0	0	0	0	0	0	1	612	755	27	1		1	ANGPT4	20	865878	Silent	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09		865878	62159642	51	47715										
CHD6	0	genome.wustl.edu	37	chr20	40126068	40126068	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggcttgtttattcctaaatcGcttgatcttctgtgcgatgc	9	9	2	1			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	20	40126068	40126068	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	nonsense	c.1048	p.R350*	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	199	0	0	156	27	14.75	-	-	-	A	40126068	G	A	40126068	4	1	546	1	0	0	0	0	0	1	0	0	3358	1095	38	1	7219	1	CHD6	20	40126068	Nonsense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	39260190	40126068	22899452	52	47716										
PI3	0	genome.wustl.edu	37	chr20	43804672	43804672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ccattatcttgatccggtgcGccatgttgaatccccctaac	7	14	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	20	43804672	43804672	G	A	SNP	PI3	ENST00000243924	human	ensembl	69_37n	1	known	missense	c.250	p.A84T	0.001	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Trappin_transglut-bd_rpt,pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	PI3	HGNC	ENSG00000124102	240	0	0	130	76	36.89	-	-	-	A	43804672	G	A	43804672	3	1	546	1	0	0	0	0	1	0	0	0	11944	1087	38	1	256	1	PI3	20	43804672	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	3678604	43804672	19220848	53	47717										
CDH26	0	genome.wustl.edu	37	chr20	58571003	58571003	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	caaactgtccatgtaaggatCtgcccctgtgccagtgggct	11	12	1	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	20	58571003	58571003	C	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.1782	p.I594M	0.072	superfamily_Cadherin-like	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	69	0	0	143	17	10.62	-	-	-	G	58571003	C	G	58571003	3	3	546	1	0	0	0	0	1	0	0	0	3139	903	32	2	1828	2	CDH26	20	58571003	Missense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	14766331	58571003	4454517	54	47718										
CDC45	0	genome.wustl.edu	37	chr22	19504407	19504407	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ggatgctgcacaaccattttGacctctcaggtgagagtctc	10	11	2	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	22	19504407	19504407	G	A	SNP	CDC45	ENST00000437685	human	ensembl	69_37n	1	known	missense	c.1723	p.D575N	1.000	pfam_CDC45	pfam_CDC45	-	no_errors	CDC45	HGNC	ENSG00000093009	30	0	0	11	8	42.11	-	-	-	A	19504407	G	A	19504407	3	1	546	1	0	0	0	0	1	0	0	0	3110	1290	45	2	1793	2	CDC45	22	19504407	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		19504407	31800159	55	47719										
XPNPEP3	0	genome.wustl.edu	37	chr22	41265020	41265020	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	caggatgtatgttgtgttcaCagcgaaggtactcccttcag	11	9	2	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	bd560d56-fd13-4213-8e29-2a99fee0a055	22	41265020	41265020	C	T	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	nonsense	c.82	p.Q28*	0.537	NULL	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	221	0	0	211	36	14.57	-	-	-	T	41265020	C	T	41265020	4	4	546	1	0	0	0	0	0	1	0	0	17541	479	17	4	88	4	XPNPEP3	22	41265020	Nonsense_Mutation	SNP	C	TCGA-BH-A0H7-01A-13W-A071-09	21760613	41265020	10039546	56	47720										
GLRA2	0	genome.wustl.edu	37	chrX	14627177	14627177	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	atgggatattatttgatccaGatgtacatcccaagcctgct	8	9	0	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	X	14627177	14627177	G	C	SNP	GLRA2	ENST00000218075	human	ensembl	69_37n	1	known	missense	c.780	p.Q260H	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A2,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA2	HGNC	ENSG00000101958	398	0	0	129	52	28.73	-	-	-	C	14627177	G	C	14627177	3	2	546	1	0	0	0	0	1	0	0	0	6507	933	33	2	878	2	GLRA2	23	14627177	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09		14627177	140643383	57	47721										
FAM47B	0	genome.wustl.edu	37	chrX	34962578	34962578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	attcttatagtgcacagcgtGggaggataaggtatggacca	13	6	1	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	X	34962578	34962578	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1630	p.G544R	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	336	0	0	176	62	26.05	-	-	-	A	34962578	G	A	34962578	3	1	546	1	0	0	0	0	1	0	0	0	5616	1348	47	4	1632	4	FAM47B	23	34962578	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	20335401	34962578	120307982	58	47722										
IQSEC2	0	genome.wustl.edu	37	chrX	53283878	53283878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ccatggcaccctcgtccagcGaggcaggcttgccctcgaag	12	16	0	0			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	X	53283878	53283878	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.1235	p.S412L	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	59	0	0	24	13	35.14	-	-	-	A	53283878	G	A	53283878	3	1	546	1	0	0	0	0	1	0	0	0	7872	1059	37	1	3279	1	IQSEC2	23	53283878	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	18321300	53283878	101986682	59	47723										
HS6ST2	0	genome.wustl.edu	37	chrX	131762517	131762517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.152542372881356	9	0.154014681113441	1.90564784053156	6.35215946843854	0.794019933554817	0.346935417523653	0.950412796697626	0	ccttcccttcagaaatttgcGttgttcctgacgctttcgcc	7	14	1	2			TCGA-BH-A0H7-01A-13W-A071-09	TCGA-BH-A0H7-11A-13W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8623830e-3fdd-4707-83e9-5f528105aa55	51420539-3e3b-4b35-8041-3ec47b0adeea	X	131762517	131762517	G	A	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1672	p.R558C	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	216	0	0	48	79	62.2	-	-	-	A	131762517	G	A	131762517	3	1	546	1	0	0	0	0	1	0	0	0	7422	1145	40	1	269	1	HS6ST2	23	131762517	Missense_Mutation	SNP	G	TCGA-BH-A0H7-01A-13W-A071-09	78478639	131762517	23508043	60	47724										
CLCA2	0	genome.wustl.edu	37	chr1	86919248	86919248	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gaagaggaattgaccctatcTtggacagcacctggagaaga	12	8	1	4			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	1	86919248	86919248	T	G	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	silent	c.2352	p.S784	0.961	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	182	1	0.54	89	21	19.09	-	-	-	G	86919248	T	G	86919248	2	3	547	1	0	0	0	0	0	0	0	1	3488	1596	56	5		5	CLCA2	1	86919248	Silent	SNP	T	TCGA-BH-A0H9-01A-11W-A071-09		86919248	162331373	1	47725										
ZNF124	0	genome.wustl.edu	37	chr1	247320267	247320267	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ctttcatggtaatgaaggcaAttggagtaacggaaggcttt	12	5	1	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	1	247320267	247320267	A	G	SNP	ZNF124	ENST00000543802	human	ensembl	69_37n	-1	known	silent	c.657	p.N219	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418	196	0	0	245	80	24.62	-	-	-	G	247320267	A	G	247320267	2	3	547	1	0	0	0	0	0	0	0	1	17816	98	4	5		5	ZNF124	1	247320267	Silent	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09	160401019	247320267	1930354	2	47726										
COBLL1	0	genome.wustl.edu	37	chr2	165551456	165551456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	aggactaaccatggcatcatCaggtgagctcacagaactgg	11	10	3	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	165551456	165551456	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.2761	p.D921N	0.000	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	109	1	0.91	145	37	20.33	-	-	-	T	165551456	C	T	165551456	3	4	547	1	0	0	0	0	1	0	0	0	3684	826	29	2	952	2	COBLL1	2	165551456	Missense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09		165551456	77647917	3	47727										
TTN	0	genome.wustl.edu	37	chr2	179604078	179604078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ctctttagcatttgttatggAtgttgtgaggtgtacaatat	10	4	1	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	179604078	179604078	A	G	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.13369	p.S4457P	0.222	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	154	0	0	168	23	12.04	-	-	-	G	179604078	A	G	179604078	3	3	547	1	0	0	0	0	1	0	0	0	16832	333	12	5	90907	5	TTN	2	179604078	Missense_Mutation	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09	14052622	179604078	63595295	4	47728										
BMPR2	0	genome.wustl.edu	37	chr2	203417447	203417447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tttgtcttacaggcagtgagGtcactcaaggagacaatcga	11	8	3	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	203417447	203417447	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	silent	c.1422	p.R474	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	83	0	0	69	39	36.11	-	-	-	A	203417447	G	A	203417447	2	1	547	1	0	0	0	0	0	0	0	1	1476	1252	44	4		4	BMPR2	2	203417447	Silent	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	23813369	203417447	39781926	5	47729										
DNAJB3	0	genome.wustl.edu	37	chr2	234652466	234652466	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	cttgttctcagggtttttgtCggggtgccacttgagcgcca	13	10	1	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	234652466	234652466	C	T	SNP	DNAJB3	ENST00000449667	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	65	0	0	33	19	36.54	-	-	-	T	234652466	C	T	234652466	1	4	547	0	1	0	0	0	0	0	0	0	4656	884	31	1		1	DNAJB3	2	234652466	RNA	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09	31235019	234652466	8546907	6	47730										
PLCL2	0	genome.wustl.edu	37	chr3	17052713	17052713	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tctgaactggtcagcatctgCaaatcagttcagttcaaaga	8	9	6	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	17052713	17052713	C	A	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	nonsense	c.1497	p.C499*	0.869	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	86	0	0	88	24	21.43	-	-	-	A	17052713	C	A	17052713	4	1	547	1	0	0	0	0	0	1	0	0	12114	718	25	4	1875	4	PLCL2	3	17052713	Nonsense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09		17052713	180969717	7	47731										
LMOD3	0	genome.wustl.edu	37	chr3	69168311	69168311	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ttgctcttcctgtcgtttctGcctttgtttatcctgattcc	6	12	2	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	69168311	69168311	G	A	SNP	LMOD3	ENST00000420581	human	ensembl	69_37n	-1	known	nonsense	c.1195	p.Q399*	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380	242	0	0	207	38	15.51	-	-	-	A	69168311	G	A	69168311	4	1	547	1	0	0	0	0	0	1	0	0	8914	1328	46	4	495	4	LMOD3	3	69168311	Nonsense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	52115598	69168311	128854119	8	47732										
PIK3CA	0	genome.wustl.edu	37	chr3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	atcttttctcaatgatgcttGgctctggaatgccagaacta	8	9	3	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	178951964	178951964	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3019	p.G1007R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	297	0	0	162	88	35.2	-	-	-	C	178951964	G	C	178951964	3	2	547	1	0	0	0	0	1	0	0	0	11987	1348	47	4	3097	4	PIK3CA	3	178951964	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	109783653	178951964	19070466	9	47733										
ACSL1	0	genome.wustl.edu	37	chr4	185678828	185678828	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ccagaatccttcccaagtctCaccatatcttcgaggatagc	6	14	2	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	4	185678828	185678828	C	T	SNP	ACSL1	ENST00000281455	human	ensembl	69_37n	-1	known	silent	c.1917	p.V639	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726	377	0	0	451	113	20.04	-	-	-	T	185678828	C	T	185678828	2	4	547	1	0	0	0	0	0	0	0	1	177	813	29	2		2	ACSL1	4	185678828	Silent	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09		185678828	5475448	10	47734										
PCDHB16	0	genome.wustl.edu	37	chr5	140563931	140563931	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gacggcgactcgggccagaaTgcctggctgtcgtaccagct	14	13	0	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	5	140563931	140563931	T	C	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	silent	c.1797	p.N599	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	12	0	0	7	8	53.33	-	-	-	C	140563931	T	C	140563931	2	2	547	1	0	0	0	0	0	0	0	1	11614	1461	51	5		5	PCDHB16	5	140563931	Silent	SNP	T	TCGA-BH-A0H9-01A-11W-A071-09		140563931	40351329	11	47735										
PCDHGA3	0	genome.wustl.edu	37	chr5	140724038	140724038	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ataaaaattggtgaactaacGgttcctggaacccgatttcc	8	9	0	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	5	140724038	140724038	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.438	p.T146	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	115	0	0	104	18	14.75	-	-	-	A	140724038	G	A	140724038	2	1	547	1	0	0	0	0	0	0	0	1	11628	1103	39	1		1	PCDHGA3	5	140724038	Silent	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	160107	140724038	40191222	12	47736										
ODZ2	0	genome.wustl.edu	37	chr5	167671462	167671462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	cttgtccattgactatgatcGaaatattcggactgaaaaga	8	7	0	4			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	5	167671462	167671462	G	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.5558	p.R1853Q	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	23	0	0	13	9	40.91	-	-	-	A	167671462	G	A	167671462	3	1	547	1	0	0	0	0	1	0	0	0	10908	1058	37	1	5633	1	ODZ2	5	167671462	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	26947424	167671462	13243798	13	47737										
BTN3A1	0	genome.wustl.edu	37	chr6	26406257	26406257	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	catggagctgaagtgggtgaGttccagcctaaggcaggtgg	17	7	0	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	6	26406257	26406257	G	C	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	missense	c.206	p.S69T	0.001	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	154	0	0	75	20	21.05	-	-	-	C	26406257	G	C	26406257	3	2	547	1	0	0	0	0	1	0	0	0	1571	1029	36	4	212	4	BTN3A1	6	26406257	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09		26406257	144708810	14	47738										
COL11A2	0	genome.wustl.edu	37	chr6	33135615	33135615	+	Frame_Shift_Del	DEL	C	C	-													0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tgtcgcccctcggaaccaggCgagccagcaggaccctgcag							TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-11A-22W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	50589b20-69ac-484a-9fe8-d988a891d86e	6	33135615	33135615	C	-	DEL	COL11A2	ENST00000341947	human	ensembl	69_37n	-1	known	frame_shift_del	c.3975	p.P1326fs	0.991	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	39	0	0	14	2	12.5	-	-	-	-	33135615	C	-	33135615	7	5	547	1	0	1	0	1	0	0	0	0	3698	755	27	0	1283	0	COL11A2	6	33135615	Frame_Shift_Del	DEL	C	TCGA-BH-A0H9-01A-11W-A071-09	6729358	33135615	137979452	15	47739										
HIVEP2	0	genome.wustl.edu	37	chr6	143093972	143093972	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gacagacatcatagtcatacCcaaccctgtccccaggagac	7	15	2	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	6	143093972	143093972	C	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.1904	p.G635V	0.030	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	92	0	0	61	24	28.24	-	-	-	A	143093972	C	A	143093972	3	1	547	1	0	0	0	0	1	0	0	0	7238	623	22	4	5460	4	HIVEP2	6	143093972	Missense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09	109958357	143093972	28021095	16	47740										
MCM4	0	genome.wustl.edu	37	chr8	48887308	48887308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	caataggcttatgtagacatGaggaagattggcagtagccg	13	6	0	3			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	48887308	48887308	G	A	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	missense	c.2151	p.M717I	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	235	0	0	154	36	18.95	-	-	-	A	48887308	G	A	48887308	3	1	547	1	0	0	0	0	1	0	0	0	9460	1290	45	2	2205	2	MCM4	8	48887308	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09		48887308	97476714	17	47741										
FABP9	0	genome.wustl.edu	37	chr8	82371416	82371416	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tgacctttactttccggttgTctgctgtagtttcatcaaat	7	9	3	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	82371416	82371416	T	C	SNP	FABP9	ENST00000379071	human	ensembl	69_37n	-1	known	missense	c.230	p.D77G	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP9	HGNC	ENSG00000205186	299	0	0	213	35	14.11	-	-	-	C	82371416	T	C	82371416	3	2	547	1	0	0	0	0	1	0	0	0	5403	1667	58	5	179	5	FABP9	8	82371416	Missense_Mutation	SNP	T	TCGA-BH-A0H9-01A-11W-A071-09	33484108	82371416	63992606	18	47742										
RIMS2	0	genome.wustl.edu	37	chr8	104709351	104709351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ttgaaatgtataaagagcagGtaaagaagatgggagaagaa	13	1	0	6			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	104709351	104709351	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.214	p.V72I	1.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	245	0	0	327	39	10.66	-	-	-	A	104709351	G	A	104709351	3	1	547	1	0	0	0	0	1	0	0	0	13454	1261	44	4	220	4	RIMS2	8	104709351	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	22337935	104709351	41654671	19	47743										
ALDH1A1	0	genome.wustl.edu	37	chr9	75533714	75533714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	cttcagattgcttttcccggCagcttctttgatcaacttgc	7	12	3	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	9	75533714	75533714	C	A	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	missense	c.772	p.A258S	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	114	0	0	106	22	17.19	-	-	-	A	75533714	C	A	75533714	3	1	547	1	0	0	0	0	1	0	0	0	490	710	25	4	757	4	ALDH1A1	9	75533714	Missense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09		75533714	65679717	20	47744										
PRUNE2	0	genome.wustl.edu	37	chr9	79259823	79259823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	agaatctttgttggctgtggGatcttctggaaacaaagcac	11	7	3	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	9	79259823	79259823	G	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.7486	p.P2496T	0.030	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	87	0	0	64	13	16.88	-	-	-	T	79259823	G	T	79259823	3	4	547	1	0	0	0	0	1	0	0	0	12721	1174	41	2	738	2	PRUNE2	9	79259823	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	3726109	79259823	61953608	21	47745										
ABI1	0	genome.wustl.edu	37	chr10	27040638	27040638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	atccactggtggtggtggtgGgggaggtggagagtcatcaa	19	5	2	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	27040638	27040638	G	A	SNP	ABI1	ENST00000355394	human	ensembl	69_37n	-1	known	missense	c.1243	p.P415S	0.999	superfamily_SH3_domain	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754	56	0	0	63	9	12.5	-	-	-	A	27040638	G	A	27040638	3	1	547	1	0	0	0	0	1	0	0	0	88	1232	43	4	294	4	ABI1	10	27040638	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09		27040638	108494109	22	47746										
USP54	0	genome.wustl.edu	37	chr10	75277121	75277121	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tcttggaacagctgttcttgAgcaatgcctcttccttcttg	8	11	4	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	75277121	75277121	A	C	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	silent	c.3063	p.A1021	0.800	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	137	0	0	51	10	16.39	-	-	-	C	75277121	A	C	75277121	2	2	547	1	0	0	0	0	0	0	0	1	17182	291	11	5		5	USP54	10	75277121	Silent	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09	48236483	75277121	60257626	23	47747										
NOC3L	0	genome.wustl.edu	37	chr10	96121599	96121599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	actagtttttattaacttgcGaaagcttgggatctgttttt	8	5	1	0			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	96121599	96121599	G	A	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	missense	c.40	p.R14C	1.000	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	107	0	0	108	35	24.31	-	-	-	A	96121599	G	A	96121599	3	1	547	1	0	0	0	0	1	0	0	0	10586	1058	37	1	2442	1	NOC3L	10	96121599	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	20844478	96121599	39413148	24	47748										
OBFC1	0	genome.wustl.edu	37	chr10	105664860	105664860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	taaaattacctgatacagacTcagtattcaactttttccag	4	9	2	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	105664860	105664860	T	C	SNP	OBFC1	ENST00000224950	human	ensembl	69_37n	-1	known	missense	c.284	p.E95G	0.004	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	pfam_DUF1879_CST_STN1,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960	342	0	0	133	27	16.88	-	-	-	C	105664860	T	C	105664860	3	2	547	1	0	0	0	0	1	0	0	0	10880	1551	54	5	850	5	OBFC1	10	105664860	Missense_Mutation	SNP	T	TCGA-BH-A0H9-01A-11W-A071-09	9543261	105664860	29869887	25	47749										
MUC5B	0	genome.wustl.edu	37	chr11	1264631	1264631	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	cacacctgcagccaccagcaAcacagtgactccctcctctg	6	19	1	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	11	1264631	1264631	A	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.6530	p.N2177S	0.024	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	18	0	0	7	6	46.15	-	-	-	G	1264631	A	G	1264631	3	3	547	1	0	0	0	0	1	0	0	0	10051	43	2	5	6652	5	MUC5B	11	1264631	Missense_Mutation	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09		1264631	133741885	26	47750										
PTHLH	0	genome.wustl.edu	37	chr12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-													0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gtgttcttctgttgttttccTttttttttttcaaaccccac							TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-11A-22W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	50589b20-69ac-484a-9fe8-d988a891d86e	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	25	0	0	22	4	15.38	-	-	-	-	28114898	T	-	28114898	7	5	547	1	0	1	0	1	0	0	0	0	12842	1624	56	0		0	PTHLH	12	28114898	Frame_Shift_Del	DEL	T	TCGA-BH-A0H9-01A-11W-A071-09		28114898	105736997	27	47751										
KL	0	genome.wustl.edu	37	chr13	33634928	33634928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gaccaagaagaggaaatcctActgtgttgactttgctgcca	10	9	0	3			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	13	33634928	33634928	A	G	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	missense	c.1712	p.Y571C	0.937	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	82	0	0	37	19	33.33	-	-	-	G	33634928	A	G	33634928	3	3	547	1	0	0	0	0	1	0	0	0	8384	391	14	5	1726	5	KL	13	33634928	Missense_Mutation	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09		33634928	81534950	28	47752										
CTRL	0	genome.wustl.edu	37	chr16	67964902	67964902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gaagtggaagccgctgctgtCctgtggtcagggctcagagg	17	9	2	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	16	67964902	67964902	C	T	SNP	CTRL	ENST00000574481	human	ensembl	69_37n	-1	known	missense	c.157	p.D53N	0.590	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086	8	0	0	7	6	46.15	-	-	-	T	67964902	C	T	67964902	3	4	547	1	0	0	0	0	1	0	0	0	4060	869	30	2	657	2	CTRL	16	67964902	Missense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09		67964902	22389851	29	47753										
NF1	0	genome.wustl.edu	37	chr17	29685563	29685563	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ccaagatccaaatttgttaaAtccaatccatggaattgtgc	6	9	0	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	17	29685563	29685563	A	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	missense	c.8036	p.N2679S	1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	178	0	0	114	17	12.98	-	-	-	G	29685563	A	G	29685563	3	3	547	1	0	0	0	0	1	0	0	0	10428	101	4	5	8315	5	NF1	17	29685563	Missense_Mutation	SNP	A	TCGA-BH-A0H9-01A-11W-A071-09		29685563	51509647	30	47754										
ARFGEF2	0	genome.wustl.edu	37	chr20	47601333	47601333	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	gcatgctgggaacgtcagttGaagacatagcccaattcctg	11	10	1	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	20	47601333	47601333	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.2026	p.E676K	1.000	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	221	0	0	756	208	21.58	-	-	-	A	47601333	G	A	47601333	3	1	547	1	0	0	0	0	1	0	0	0	855	1291	45	2	2084	2	ARFGEF2	20	47601333	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09		47601333	15424187	31	47755										
SHROOM2	0	genome.wustl.edu	37	chrX	9905450	9905451	+	Frame_Shift_Ins	INS	-	-	C													0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	agcccctgggcacccaggtgINSccccccgagaaagaccgctg							TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	9905450	9905451	-	C	INS	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	frame_shift_ins	c.3864_3865	p.E1290fs	0.000:0.001	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	13	0	0	10	2	16.67	-	-	-	C	9905451	-	C	9905450	7	5	547	1	0	1	1	0	0	0	0	0	14383	1306	46	0	3890	0	SHROOM2	23	9905450	Frame_Shift_Ins	INS	-	TCGA-BH-A0H9-01A-11W-A071-09		9905450	145365110	32	47756										
MAGEB4	0	genome.wustl.edu	37	chrX	30260727	30260727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ggaaagtctctcagcgcacgGagctggtctttggccttgcc	13	12	3	0			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	30260727	30260727	G	A	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.475	p.E159K	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	81	0	0	39	9	18.75	-	-	-	A	30260727	G	A	30260727	3	1	547	1	0	0	0	0	1	0	0	0	9249	1175	41	2	477	2	MAGEB4	23	30260727	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	20355277	30260727	125009833	33	47757										
DMD	0	genome.wustl.edu	37	chrX	31950337	31950337	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	tgacaagatattcttttgttCttctagcctggagaaagaag	9	6	3	4			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	31950337	31950337	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.6622	p.E2208Q	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	133	0	0	121	20	14.18	-	-	-	G	31950337	C	G	31950337	3	3	547	1	0	0	0	0	1	0	0	0	4616	922	32	2	4719	2	DMD	23	31950337	Missense_Mutation	SNP	C	TCGA-BH-A0H9-01A-11W-A071-09	1689610	31950337	123320223	34	47758										
MAOA	0	genome.wustl.edu	37	chrX	43603045	43603046	+	Frame_Shift_Ins	INS	-	-	T													0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ttggttcccttgaagggtgaINSttcgtcaacccgtgggcagg							TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-11A-22W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	50589b20-69ac-484a-9fe8-d988a891d86e	X	43603045	43603046	-	T	INS	MAOA	ENST00000338702	human	ensembl	69_37n	1	known	frame_shift_ins	c.1267_1268	p.R424fs	0.720:0.922	pfam_Amino_oxidase,prints_Flavin_amine_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221	15	0	0	2	2	50	-	-	-	T	43603046	-	T	43603045	7	5	547	1	0	1	1	0	0	0	0	0	9296	333	12	0	1317	0	MAOA	23	43603045	Frame_Shift_Ins	INS	-	TCGA-BH-A0H9-01A-11W-A071-09	11652708	43603045	111667515	35	47759										
ELK1	0	genome.wustl.edu	37	chrX	47500696	47500696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	catgttggtcttgttcttgcGtagcccccacagccgggcca	11	14	2	0			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	47500696	47500696	G	A	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	missense	c.145	p.R49C	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	145	0	0	52	13	20	-	-	-	A	47500696	G	A	47500696	3	1	547	1	0	0	0	0	1	0	0	0	5096	1145	40	1	1161	1	ELK1	23	47500696	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	3897651	47500696	107769864	36	47760										
KIAA2022	0	genome.wustl.edu	37	chrX	73961666	73961666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	attcactggattgggttgggGctatctcccttgagacttca	11	9	3	1			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	73961666	73961666	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.2726	p.A909V	0.344	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	364	0	0	270	52	16.1	-	-	-	A	73961666	G	A	73961666	3	1	547	1	0	0	0	0	1	0	0	0	8321	1203	42	4	1832	4	KIAA2022	23	73961666	Missense_Mutation	SNP	G	TCGA-BH-A0H9-01A-11W-A071-09	26460970	73961666	81308894	37	47761										
ATP7A	0	genome.wustl.edu	37	chrX	77244986	77244986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	ttgatggcatgcattgtaaaTcatgtgtgtcaaatattgaa	9	4	2	2			TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	77244986	77244986	T	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.868	p.S290P	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	335	0	0	297	56	15.86	-	-	-	C	77244986	T	C	77244986	3	2	547	1	0	0	0	0	1	0	0	0	1194	1435	50	5	878	5	ATP7A	23	77244986	Missense_Mutation	SNP	T	TCGA-BH-A0H9-01A-11W-A071-09	3283320	77244986	78025574	38	47762										
BHLHB9	0	genome.wustl.edu	37	chrX	102003966	102003967	+	Frame_Shift_Ins	INS	-	-	A													0.128205128205128	5	0.572066951992368	1.43741707209199	1.82072829131653	1.36554621848739	0.206349206349206	0.776190476190475	0	aagagcccaggccaaaactgINSaaaaaaaggctgctatacaa							TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-11A-22W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	50589b20-69ac-484a-9fe8-d988a891d86e	X	102003966	102003967	-	A	INS	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	frame_shift_ins	c.43_44	p.A18fs	0.000:0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	212	0	0	147	22	13.02	-	-	-	A	102003967	-	A	102003966	7	5	547	1	0	1	1	0	0	0	0	0	1425	1291	45	0	45	0	BHLHB9	23	102003966	Frame_Shift_Ins	INS	-	TCGA-BH-A0H9-01A-11W-A071-09	24758980	102003966	53266594	39	47763										
MORN1	0	genome.wustl.edu	37	chr1	2319730	2319730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtgatctctccgtccacaaaCgccccttcgtaataactgcc	6	16	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	2319730	2319730	C	T	SNP	MORN1	ENST00000449373	human	ensembl	69_37n	-1	known	missense	c.47	p.R16H	0.041	NULL	NULL	-	no_start_codon	MORN1	HGNC	ENSG00000116151	197	0	0	155	83	34.87	-	-	-	T	2319730	C	T	2319730	3	4	548	1	0	0	0	0	1	0	0	0	9780	523	19	1	1346	1	MORN1	1	2319730	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		2319730	246930891	1	47764										
CHD5	0	genome.wustl.edu	37	chr1	6181297	6181297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atccaaggcggctggaagggCctgcagaggaaaagccagga	16	9	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	6181297	6181297	C	T	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.4780	p.A1594T	0.700	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	104	0	0	128	22	14.29	-	-	-	T	6181297	C	T	6181297	3	4	548	1	0	0	0	0	1	0	0	0	3357	753	26	4	1120	4	CHD5	1	6181297	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3861567	6181297	243069324	2	47765										
NOL9	0	genome.wustl.edu	37	chr1	6610529	6610529	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgcttttctcaggctgtgaGtagtgaagtgcatggatact	12	6	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	6610529	6610529	G	A	SNP	NOL9	ENST00000377705	human	ensembl	69_37n	-1	known	silent	c.543	p.Y181	0.001	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	NOL9	HGNC	ENSG00000162408	281	0	0	245	150	37.97	-	-	-	A	6610529	G	A	6610529	2	1	548	1	0	0	0	0	0	0	0	1	10600	1024	36	4		4	NOL9	1	6610529	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	429232	6610529	242640092	3	47766										
SLC9A1	0	genome.wustl.edu	37	chr1	27440699	27440699	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cgcctacacccttgatcaggCcccccaccagcagccccacc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	27440699	27440699	C	-	DEL	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	frame_shift_del	c.431	p.G144fs	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	35	0	0	29	11	26.83	-	-	-	-	27440699	C	-	27440699	7	5	548	1	0	1	0	1	0	0	0	0	14798	739	26	0	2060	0	SLC9A1	1	27440699	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	20830170	27440699	221809922	4	47767										
ADC	0	genome.wustl.edu	37	chr1	33562360	33562360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtacttcccagagggctgtgGcgtggacatctttgctgagc	14	10	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	33562360	33562360	G	A	SNP	ADC	ENST00000373441	human	ensembl	69_37n	1	known	missense	c.806	p.G269D	0.997	pfam_De-COase2_N,superfamily_Ala_racemase/Decarboxylase_C	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ADC	HGNC	ENSG00000142920	195	0	0	199	41	17.08	-	-	-	A	33562360	G	A	33562360	3	1	548	1	0	0	0	0	1	0	0	0	287	1203	42	4	828	4	ADC	1	33562360	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	6121661	33562360	215688261	5	47768										
ZNF362	0	genome.wustl.edu	37	chr1	33745989	33745989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcggagaacccggggggtcCgcctgtccttgtagtcccct	15	14	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	33745989	33745989	C	T	SNP	ZNF362	ENST00000373428	human	ensembl	69_37n	1	known	missense	c.614	p.P205L	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	18	0	0	19	13	40.62	-	-	-	T	33745989	C	T	33745989	3	4	548	1	0	0	0	0	1	0	0	0	17964	652	23	1	628	1	ZNF362	1	33745989	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	183629	33745989	215504632	6	47769										
GJB3	0	genome.wustl.edu	37	chr1	35250494	35250495	+	Frame_Shift_Del	DEL	GG	GG	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggtggctgcagagcgcgtgtGgggggatgagcagaaggact							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	35250494	35250495	GG	-	DEL	GJB3	ENST00000373362	human	ensembl	69_37n	1	known	frame_shift_del	c.131_132	p.D46fs	1.000:1.000	pfam_Connexin_N,smart_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910	154	0	0	153	74	32.6	-	-	-	-	35250495	GG	-	35250494	7	5	548	1	0	1	0	1	0	0	0	0	6461	1357	47	0	133	0	GJB3	1	35250494	Frame_Shift_Del	DEL	GG	TCGA-BH-A0HA-01A-11D-A12Q-09	1504505	35250494	214000127	7	47770										
BMP8B	0	genome.wustl.edu	37	chr1	40228838	40228838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggagcactccccctcacagtAataggccgagtagccttggg	12	13	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	40228838	40228838	A	G	SNP	BMP8B	ENST00000372827	human	ensembl	69_37n	-1	known	missense	c.985	p.Y329H	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP8B	HGNC	ENSG00000116985	135	0	0	92	61	39.87	-	-	-	G	40228838	A	G	40228838	3	3	548	1	0	0	0	0	1	0	0	0	1472	362	13	5	231	5	BMP8B	1	40228838	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	4978344	40228838	209021783	8	47771										
PTPRF	0	genome.wustl.edu	37	chr1	44069494	44069494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggggaccacctacatcttcCggcttgctgccaagaaccgg	11	14	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	44069494	44069494	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.2671	p.R891W	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	24	0	0	19	16	44.44	-	-	-	T	44069494	C	T	44069494	3	4	548	1	0	0	0	0	1	0	0	0	12884	643	23	1	2725	1	PTPRF	1	44069494	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3840656	44069494	205181127	9	47772										
L1TD1	0	genome.wustl.edu	37	chr1	62672476	62672476	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaataagtttaaggtcttaaTggaaattcaagacctgatgt	9	4	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	62672476	62672476	T	A	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	missense	c.176	p.M59K	0.616	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	84	0	0	90	20	18.18	-	-	-	A	62672476	T	A	62672476	3	1	548	1	0	0	0	0	1	0	0	0	8643	1464	51	5	178	5	L1TD1	1	62672476	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	18602982	62672476	186578145	10	47773										
FAM73A	0	genome.wustl.edu	37	chr1	78272735	78272735	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acaaagcagatgaagatgatAttaaacttgttaatattcct	6	5	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	78272735	78272735	A	T	SNP	FAM73A	ENST00000370791	human	ensembl	69_37n	1	known	missense	c.586	p.I196F	0.198	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	332	0	0	291	152	34.31	-	-	-	T	78272735	A	T	78272735	3	4	548	1	0	0	0	0	1	0	0	0	5662	449	16	5	604	5	FAM73A	1	78272735	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	15600259	78272735	170977886	11	47774										
ARHGAP29	0	genome.wustl.edu	37	chr1	94668215	94668216	+	Frame_Shift_Del	DEL	TT	TT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctgcacgaaacatggaagacTttgctttctcatattcatct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	94668215	94668216	TT	-	DEL	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	frame_shift_del	c.1028_1027	p.K343fs	0.998:0.996	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	387	0	0	425	73	14.6	-	-	-	-	94668216	TT	-	94668215	7	5	548	1	0	1	0	1	0	0	0	0	880	1609	56	0	2809	0	ARHGAP29	1	94668215	Frame_Shift_Del	DEL	TT	TCGA-BH-A0HA-01A-11D-A12Q-09	16395480	94668215	154582406	12	47775										
DDX20	0	genome.wustl.edu	37	chr1	112305336	112305336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgctgagaaggtgaatctggTtgtaaatctggatgtaccat	12	5	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	112305336	112305336	T	C	SNP	DDX20	ENST00000369702	human	ensembl	69_37n	1	known	missense	c.1142	p.V381A	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703	371	0	0	448	72	13.82	-	-	-	C	112305336	T	C	112305336	3	2	548	1	0	0	0	0	1	0	0	0	4379	1725	60	5	1176	5	DDX20	1	112305336	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	17637121	112305336	136945285	13	47776										
ZNF687	0	genome.wustl.edu	37	chr1	151261079	151261079	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agcgcatgcataagaatcgaCccccccatgtctgtcctgag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	151261079	151261079	C	-	DEL	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	frame_shift_del	c.2191	p.H733fs	0.430	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	65	0	0	71	10	12.2	-	-	-	-	151261079	C	-	151261079	7	5	548	1	0	1	0	1	0	0	0	0	18188	507	18	0	2197	0	ZNF687	1	151261079	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	38955743	151261079	97989542	14	47777										
KRTCAP2	0	genome.wustl.edu	37	chr1	155145235	155145235	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtgagcgagaacacgaagagAcccgaaccaagcaggccgcc	13	13	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	155145235	155145235	A	G	SNP	KRTCAP2	ENST00000295682	human	ensembl	69_37n	-1	known	silent	c.216	p.G72	0.999	pfam_Uncharacterised_KRTCAP2	pfam_Uncharacterised_KRTCAP2	-	no_errors	KRTCAP2	HGNC	ENSG00000163463	94	0	0	117	17	12.5	-	-	-	G	155145235	A	G	155145235	2	3	548	1	0	0	0	0	0	0	0	1	8632	262	10	5		5	KRTCAP2	1	155145235	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	3884156	155145235	94105386	15	47778										
SLC25A44	0	genome.wustl.edu	37	chr1	156180034	156180034	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgtgttgacttttccaggttGagggcaagaactccatcatc	10	9	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	156180034	156180034	G	A	SNP	SLC25A44	ENST00000359511	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A44	HGNC	ENSG00000160785	289	0	0	219	157	41.76	-	-	-	A	156180034	G	A	156180034	3	1	548	1	0	0	0	0	1	0	0	0	14598	1291	45	2	767	2	SLC25A44	1	156180034	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	1034799	156180034	93070587	16	47779										
FCGR2A	0	genome.wustl.edu	37	chr1	161487829	161487829	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agaaaccaacaatgactatgAaacagctgacggcggctaca	9	10	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	161487829	161487829	A	C	SNP	FCGR2A	ENST00000271450	human	ensembl	69_37n	1	known	missense	c.845	p.E282A	0.009	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR2A	HGNC	ENSG00000143226	374	0	0	470	62	11.61	-	-	-	C	161487829	A	C	161487829	3	2	548	1	0	0	0	0	1	0	0	0	5827	246	9	5	871	5	FCGR2A	1	161487829	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	5307795	161487829	87762792	17	47780										
CFH	0	genome.wustl.edu	37	chr1	196695952	196695952	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggctgggcccagctttcttcCcctccttattactatggaga	9	13	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	196695952	196695952	C	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	silent	c.2118	p.S706	0.009	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	238	0	0	143	18	11.18	-	-	-	T	196695952	C	T	196695952	2	4	548	1	0	0	0	0	0	0	0	1	3312	610	22	4		4	CFH	1	196695952	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	35208123	196695952	52554669	18	47781										
DENND1B	0	genome.wustl.edu	37	chr1	197480015	197480015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttgccatggagggcactatCgtcttgcccaagattccact	9	12	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	197480015	197480015	C	T	SNP	DENND1B	ENST00000391979	human	ensembl	69_37n	-1	putative	missense	c.823	p.D275N	0.998	NULL	NULL	-	no_start_codon	DENND1B	HGNC	ENSG00000213047	61	0	0	10	11	50	-	-	-	T	197480015	C	T	197480015	3	4	548	1	0	0	0	0	1	0	0	0	4463	884	31	1	428	1	DENND1B	1	197480015	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	784063	197480015	51770606	19	47782										
PKP1	0	genome.wustl.edu	37	chr1	201282534	201282534	+	Missense_Mutation	SNP	C	C	T													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccagaagaccacccagaacCgctacagcttttacagcacc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	201282534	201282534	C	T	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	missense	c.547	p.R183C	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	34	0	0	48	7	12.73	-	-	-	T	201282534	C	T	201282534	3	4	548	1	0	0	0	0	1	0	0	0	12058	652	23	1	557	1	PKP1	1	201282534	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3802519	201282534	47968087	20	47783	386	2								
PKP1	0	genome.wustl.edu	37	chr1	201282535	201282535	+	Missense_Mutation	SNP	G	G	A													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccagaagaccacccagaaccGctacagcttttacagcacct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	201282535	201282535	G	A	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	missense	c.548	p.R183H	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	34	0	0	38	19	33.33	-	-	-	A	201282535	G	A	201282535	3	1	548	1	0	0	0	0	1	0	0	0	12058	1087	38	1	558	1	PKP1	1	201282535	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	1	201282535	47968086	21	47784	386	2								
PRELP	0	genome.wustl.edu	37	chr1	203452615	203452615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cgaaaggtccctgtcatcccGccccgcatccattacctcta	6	18	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	203452615	203452615	G	A	SNP	PRELP	ENST00000343110	human	ensembl	69_37n	1	known	silent	c.303	p.P101	0.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	196	0	0	159	85	34	-	-	-	A	203452615	G	A	203452615	2	1	548	1	0	0	0	0	0	0	0	1	12554	1074	38	1		1	PRELP	1	203452615	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	2170080	203452615	45798006	22	47785										
SRGAP2	0	genome.wustl.edu	37	chr1	206611342	206611342	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccctggctggggaccagaaCgaccatgacatggattccat	11	13	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	206611342	206611342	C	T	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	nonsense	c.1402	p.R468*	0.995	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	162	0	0	126	57	31.15	-	-	-	T	206611342	C	T	206611342	4	4	548	1	0	0	0	0	0	1	0	0	15237	535	19	1	1452	1	SRGAP2	1	206611342	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3158727	206611342	42639279	23	47786										
HEATR1	0	genome.wustl.edu	37	chr1	236727799	236727799	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	catttaaagaacacattaccTttttcagaaaattattggaa							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	1	236727799	236727799	T	-	DEL	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	frame_shift_del	c.4598	p.K1533fs	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	246	0	0	201	116	35.58	-	-	-	-	236727799	T	-	236727799	7	5	548	1	0	1	0	1	0	0	0	0	7078	1623	56	0	1892	0	HEATR1	1	236727799	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	30116457	236727799	12522822	24	47787										
TPO	0	genome.wustl.edu	37	chr2	1440158	1440158	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caggagcttgcaacaacaggTattgtttgtggattttctta	10	6	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	1440158	1440158	T	C	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	splice_site	c.482+2	e4+2	0.997	-	-	-	no_errors	TPO	HGNC	ENSG00000115705	194	1	0.51	271	33	10.82	-	-	-	C	1440158	T	C	1440158	5	2	548	1	0	0	0	0	0	0	1	0	16506	1652	57	5	498	5	TPO	2	1440158	Splice_Site	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09		1440158	241759215	25	47788										
MYT1L	0	genome.wustl.edu	37	chr2	1946770	1946771	+	In_Frame_Ins	INS	-	-	TCC													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	taccgttttcttcttcctctINStcctcctcctcctcctcctc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	1946770	1946771	-	TCC	INS	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	in_frame_ins	c.489_488	p.167in_frame_insE	0.991:0.950	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	170	0	0	221	49	18.15	-	-	-	TCC	1946771	-	TCC	1946770	7	5	548	1	0	1	1	0	0	0	0	0	10179	1606	56	0	3133	0	MYT1L	2	1946770	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	506612	1946770	241252603	26	47789										
CPSF3	0	genome.wustl.edu	37	chr2	9570133	9570135	+	In_Frame_Del	DEL	CTC	CTC	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgacccagctgagattgatCtcctattaattagtcagtaa							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	9570133	9570135	CTC	-	DEL	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	in_frame_del	c.196_198	p.L68in_frame_del	1.000:1.000:0.989	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	491	0	0	539	66	10.89	-	-	-	-	9570135	CTC	-	9570133	7	5	548	1	0	1	0	1	0	0	0	0	3856	913	32	0	206	0	CPSF3	2	9570133	In_Frame_Del	DEL	CTC	TCGA-BH-A0HA-01A-11D-A12Q-09	7623363	9570133	233629240	27	47790										
SLC30A6	0	genome.wustl.edu	37	chr2	32396392	32396392	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttcgaaaaccacaaagatccTtttttggcaagttgttacgg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	32396392	32396392	T	-	DEL	SLC30A6	ENST00000282587	human	ensembl	69_37n	1	known	frame_shift_del	c.40	p.F15fs	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A6	HGNC	ENSG00000152683	395	1	0.25	543	66	10.8	-	-	-	-	32396392	T	-	32396392	7	5	548	1	0	1	0	1	0	0	0	0	14648	1609	56	0	46	0	SLC30A6	2	32396392	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	22826259	32396392	210802981	28	47791										
PRKD3	0	genome.wustl.edu	37	chr2	37507071	37507071	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tctgttcccagactggaaggTtctgggaaaattttaaatga	10	6	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	37507071	37507071	T	C	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	silent	c.990	p.E330	0.992	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	146	1	0.67	136	86	38.22	-	-	-	C	37507071	T	C	37507071	2	2	548	1	0	0	0	0	0	0	0	1	12601	1739	60	5		5	PRKD3	2	37507071	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	5110679	37507071	205692302	29	47792										
EPAS1	0	genome.wustl.edu	37	chr2	46607728	46607728	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcagatccaatacccagtgGcccccagatccaccattaca	7	16	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	46607728	46607728	G	A	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	nonsense	c.1917	p.W639*	1.000	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	26	0	0	40	10	19.61	-	-	-	A	46607728	G	A	46607728	4	1	548	1	0	0	0	0	0	1	0	0	5187	1212	42	4	1963	4	EPAS1	2	46607728	Nonsense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	9100657	46607728	196591645	30	47793										
NRXN1	0	genome.wustl.edu	37	chr2	50758375	50758375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggttgttacctagattgacCgtcagtttcacacgtcctgc	9	11	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	50758375	50758375	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	silent	c.2313	p.T771	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	140	0	0	67	31	31.63	-	-	-	T	50758375	C	T	50758375	2	4	548	1	0	0	0	0	0	0	0	1	10738	639	23	1		1	NRXN1	2	50758375	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	4150647	50758375	192440998	31	47794										
DCTN1	0	genome.wustl.edu	37	chr2	74593377	74593377	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaatctccacctaccttgctGgggggccgctctgcatcata							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	74593377	74593377	G	-	DEL	DCTN1	ENST00000361874	human	ensembl	69_37n	-1	known	frame_shift_del	c.2754	p.S919fs	0.997	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843	79	0	0	82	10	10.75	-	-	-	-	74593377	G	-	74593377	7	5	548	1	0	1	0	1	0	0	0	0	4337	1335	47	0	1122	0	DCTN1	2	74593377	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	23835002	74593377	168605996	32	47795										
LOXL3	0	genome.wustl.edu	37	chr2	74761116	74761116	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttcaaagtttgggttgatgAcaacctgtgagtgagaaaaa	11	5	1	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	74761116	74761116	A	T	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.2081	p.V694D	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	434	1	0.23	521	100	16.08	-	-	-	T	74761116	A	T	74761116	3	4	548	1	0	0	0	0	1	0	0	0	8967	275	10	5	188	5	LOXL3	2	74761116	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	167739	74761116	168438257	33	47796										
ANKRD36	0	genome.wustl.edu	37	chr2	97868069	97868069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tccattcagggtacaagtgaCgaggaagattctgttttggg	13	6	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	97868069	97868069	C	T	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	silent	c.2898	p.D966	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	720	0	0	161	49	23.22	-	-	-	T	97868069	C	T	97868069	2	4	548	1	0	0	0	0	0	0	0	1	664	535	19	1		1	ANKRD36	2	97868069	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	23106953	97868069	145331304	34	47797										
LYG2	0	genome.wustl.edu	37	chr2	99858889	99858889	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atcattgacgaagtcattgtCtatgtccgatggggtggcaa	12	7	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	99858889	99858889	C	T	SNP	LYG2	ENST00000333017	human	ensembl	69_37n	-1	known	missense	c.577	p.D193N	0.995	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674	176	0	0	125	43	25.6	-	-	-	T	99858889	C	T	99858889	3	4	548	1	0	0	0	0	1	0	0	0	9172	913	32	2	65	2	LYG2	2	99858889	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1990820	99858889	143340484	35	47798										
FOXD4L1	0	genome.wustl.edu	37	chr2	114257228	114257228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caagcgcctcacgctcagcgGcatctgcgccttcattagtg	10	15	4	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	114257228	114257228	G	A	SNP	FOXD4L1	ENST00000306507	human	ensembl	69_37n	1	known	missense	c.395	p.G132D	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492	74	0	0	64	33	34.02	-	-	-	A	114257228	G	A	114257228	3	1	548	1	0	0	0	0	1	0	0	0	6046	1203	42	4	397	4	FOXD4L1	2	114257228	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	14398339	114257228	128942145	36	47799										
LCT	0	genome.wustl.edu	37	chr2	136558374	136558374	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcagtgccaggcctattggAgactcctggaaacatacaca	11	11	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	136558374	136558374	A	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.4669	p.S1557T	0.992	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	68	0	0	63	10	13.7	-	-	-	T	136558374	A	T	136558374	3	4	548	1	0	0	0	0	1	0	0	0	8747	304	11	5	1138	5	LCT	2	136558374	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	22301146	136558374	106640999	37	47800										
TTN	0	genome.wustl.edu	37	chr2	179430671	179430671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttactactcacattagcatAcgcttttctggttgactcac	5	11	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	179430671	179430671	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.72484	p.Y24162H	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	339	0	0	138	68	33.01	-	-	-	G	179430671	A	G	179430671	3	3	548	1	0	0	0	0	1	0	0	0	16832	391	14	5	27939	5	TTN	2	179430671	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	42872297	179430671	63768702	38	47801										
SGOL2	0	genome.wustl.edu	37	chr2	201438018	201438019	+	Frame_Shift_Ins	INS	-	-	A													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tagattcctacaaagtagttINSaaaaaacgtaagaaagaatc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	201438018	201438019	-	A	INS	SGOL2	ENST00000357799	human	ensembl	69_37n	1	known	frame_shift_ins	c.2949_2950	p.R985fs	0.140:0.133	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	51	0	0	18	16	47.06	-	-	-	A	201438019	-	A	201438018	7	5	548	1	0	1	1	0	0	0	0	0	14305	1741	61	0	2971	0	SGOL2	2	201438018	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	22007347	201438018	41761355	39	47802										
DOCK10	0	genome.wustl.edu	37	chr2	225750871	225750871	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagttcctcccgctcctccaCcccccttggaagacgagtgg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	2	225750871	225750871	C	-	DEL	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	frame_shift_del	c.521	p.G174fs	0.999	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	63	0	0	47	18	26.47	-	-	-	-	225750871	C	-	225750871	7	5	548	1	0	1	0	1	0	0	0	0	4720	507	18	0	6243	0	DOCK10	2	225750871	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	24312853	225750871	17448502	40	47803										
MLH1	0	genome.wustl.edu	37	chr3	37042542	37042542	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctacctatggctttcgaggtGaggtaagctaaagattcaag	11	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	37042542	37042542	G	T	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	nonsense	c.304	p.E102*	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	358	0	0	114	127	52.48	-	-	-	T	37042542	G	T	37042542	4	4	548	1	0	0	0	0	0	1	0	0	9688	1291	45	2	314	2	MLH1	3	37042542	Nonsense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		37042542	160979888	41	47804										
WDR6	0	genome.wustl.edu	37	chr3	49049490	49049490	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acgcctggaaggagctgaccAtagtggcaggtgctgtttcc	14	10	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	49049490	49049490	A	G	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.613	p.I205V	0.765	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	37	0	0	15	17	53.12	-	-	-	G	49049490	A	G	49049490	3	3	548	1	0	0	0	0	1	0	0	0	17407	217	8	5	619	5	WDR6	3	49049490	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	12006948	49049490	148972940	42	47805										
DALRD3	0	genome.wustl.edu	37	chr3	49053683	49053684	+	Frame_Shift_Del	DEL	GT	GT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acacttgtaactctcaaagaGtgtggcaagacgggcacaat							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	49053683	49053684	GT	-	DEL	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	frame_shift_del	c.1237_1236	p.F414fs	1.000:0.518	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	111	0	0	42	36	46.15	-	-	-	-	49053684	GT	-	49053683	7	5	548	1	0	1	0	1	0	0	0	0	4261	1029	36	0	410	0	DALRD3	3	49053683	Frame_Shift_Del	DEL	GT	TCGA-BH-A0HA-01A-11D-A12Q-09	4193	49053683	148968747	43	47806										
TLR9	0	genome.wustl.edu	37	chr3	52257017	52257017	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttctcccctccatctgcctCccccatggtggctgtcagct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	52257017	52257017	C	-	DEL	TLR9	ENST00000360658	human	ensembl	69_37n	-1	known	frame_shift_del	c.1315	p.E439fs	0.133	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732	12	0	0	9	9	50	-	-	-	-	52257017	C	-	52257017	7	5	548	1	0	1	0	1	0	0	0	0	16053	864	30	0	1787	0	TLR9	3	52257017	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3203334	52257017	145765413	44	47807										
LRTM1	0	genome.wustl.edu	37	chr3	54952776	54952776	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cctcaggaccacaccgtgggCagagccgggccactgagcct	13	16	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	54952776	54952776	C	T	SNP	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	missense	c.748	p.A250T	0.020	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	66	0	0	20	34	62.96	-	-	-	T	54952776	C	T	54952776	3	4	548	1	0	0	0	0	1	0	0	0	9110	710	25	4	293	4	LRTM1	3	54952776	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	2695759	54952776	143069654	45	47808										
IMPG2	0	genome.wustl.edu	37	chr3	100992437	100992439	+	In_Frame_Del	DEL	TTC	TTC	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcacccacctctgaaataaaTtcttcttcaaggtgctggtg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	100992437	100992439	TTC	-	DEL	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	in_frame_del	c.816_814	p.E272in_frame_del	0.920:0.979:0.983	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	357	0	0	294	148	33.11	-	-	-	-	100992439	TTC	-	100992437	7	5	548	1	0	1	0	1	0	0	0	0	7783	1490	52	0	2961	0	IMPG2	3	100992437	In_Frame_Del	DEL	TTC	TCGA-BH-A0HA-01A-11D-A12Q-09	46039661	100992437	97029993	46	47809										
MYH15	0	genome.wustl.edu	37	chr3	108129537	108129537	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgagagcctgaacttccttcTgagaggcatccagcaacgcc	10	13	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	108129537	108129537	T	C	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.4448	p.Q1483R	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	67	0	0	62	40	38.83	-	-	-	C	108129537	T	C	108129537	3	2	548	1	0	0	0	0	1	0	0	0	10106	1580	55	5	1436	5	MYH15	3	108129537	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	7137100	108129537	89892893	47	47810										
MYH15	0	genome.wustl.edu	37	chr3	108189615	108189615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgacagcttggcatccaggGccctgttgatccgtgccact	11	13	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	108189615	108189615	G	A	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.1373	p.A458V	0.007	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	127	0	0	91	43	31.39	-	-	-	A	108189615	G	A	108189615	3	1	548	1	0	0	0	0	1	0	0	0	10106	1203	42	4	4583	4	MYH15	3	108189615	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	60078	108189615	89832815	48	47811										
ADCY5	0	genome.wustl.edu	37	chr3	123010174	123010174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcaggatgttgtgcagcagcCgccggttgtaggcctgcagc	16	11	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	123010174	123010174	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.3113	p.R1038Q	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	38	0	0	30	15	33.33	-	-	-	T	123010174	C	T	123010174	3	4	548	1	0	0	0	0	1	0	0	0	297	652	23	1	688	1	ADCY5	3	123010174	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	14820559	123010174	75012256	49	47812										
COL6A6	0	genome.wustl.edu	37	chr3	130380867	130380867	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agtggactctggacaatgtaTttttaagtacacccaatctg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	130380867	130380867	T	-	DEL	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	frame_shift_del	c.6217	p.L2074fs	0.958	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	166	0	0	128	62	32.29	-	-	-	-	130380867	T	-	130380867	7	5	548	1	0	1	0	1	0	0	0	0	3733	1493	52	0	6351	0	COL6A6	3	130380867	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	7370693	130380867	67641563	50	47813										
SMC4	0	genome.wustl.edu	37	chr3	160131390	160131390	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gctaagaataaagatgtaaaAgatacagaaaagtaataata	7	2	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	160131390	160131390	A	G	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	silent	c.1110	p.K370	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	195	0	0	159	71	30.87	-	-	-	G	160131390	A	G	160131390	2	3	548	1	0	0	0	0	0	0	0	1	14874	69	3	5		5	SMC4	3	160131390	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	29750523	160131390	37891040	51	47814										
PLD1	0	genome.wustl.edu	37	chr3	171431831	171431831	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaaggaatctttcactattaAccatctgtaagaaggtagta	7	6	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	171431831	171431831	A	G	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	silent	c.763	p.L255	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	189	0	0	164	85	34.14	-	-	-	G	171431831	A	G	171431831	2	3	548	1	0	0	0	0	0	0	0	1	12119	40	2	5		5	PLD1	3	171431831	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	11300441	171431831	26590599	52	47815										
PIK3CA	0	genome.wustl.edu	37	chr3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgaaccagtaggcaaccgtGaagaaaagatcctcaatcga							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	178916938	178916940	GAA	-	DEL	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	in_frame_del	c.325_327	p.E110in_frame_del	1.000:1.000:1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	123	0	0	100	45	31.03	-	-	-	-	178916940	GAA	-	178916938	7	5	548	1	0	1	0	1	0	0	0	0	11987	1291	45	0	327	0	PIK3CA	3	178916938	In_Frame_Del	DEL	GAA	TCGA-BH-A0HA-01A-11D-A12Q-09	7485107	178916938	19105492	53	47816										
ATP13A4	0	genome.wustl.edu	37	chr3	193183869	193183869	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcccaatggtggctgttcctAcaaggcacaggaggaacctg	12	11	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	3	193183869	193183869	A	G	SNP	ATP13A4	ENST00000392443	human	ensembl	69_37n	-1	novel	splice_site	c.1215+2	e11+2	0.294	-	-	-	no_errors	ATP13A4	HGNC	ENSG00000127249	133	0	0	104	66	38.82	-	-	-	G	193183869	A	G	193183869	5	3	548	1	0	0	0	0	0	0	1	0	1130	391	14	5	2453	5	ATP13A4	3	193183869	Splice_Site	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	14266931	193183869	4838561	54	47817										
PDE6B	0	genome.wustl.edu	37	chr4	660344	660344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgatggaccggaacaaggcgGccgagctccccaagctgcaa	13	13	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	660344	660344	G	A	SNP	PDE6B	ENST00000496514	human	ensembl	69_37n	1	known	missense	c.2293	p.A765T	0.412	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256	49	0	0	94	14	12.96	-	-	-	A	660344	G	A	660344	3	1	548	1	0	0	0	0	1	0	0	0	11719	1203	42	4	2371	4	PDE6B	4	660344	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		660344	190493932	55	47818										
CRIPAK	0	genome.wustl.edu	37	chr4	1389289	1389289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acgtgccattgtggagtgccCgcctgctcacacacatgccg	11	15	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	1389289	1389289	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	silent	c.990	p.P330	0.008	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	52	0	0	54	27	32.93	-	-	-	T	1389289	C	T	1389289	2	4	548	1	0	0	0	0	0	0	0	1	3907	639	23	1		1	CRIPAK	4	1389289	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	728945	1389289	189764987	56	47819										
HGFAC	0	genome.wustl.edu	37	chr4	3451048	3451048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gctggggtgacggctgcgggCggctccacaagccgggggtc	20	12	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	3451048	3451048	C	T	SNP	HGFAC	ENST00000382774	human	ensembl	69_37n	1	known	missense	c.1870	p.R624W	0.008	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	HGFAC	HGNC	ENSG00000109758	21	0	0	12	8	38.1	-	-	-	T	3451048	C	T	3451048	3	4	548	1	0	0	0	0	1	0	0	0	7137	759	27	1	1924	1	HGFAC	4	3451048	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	2061759	3451048	187703228	57	47820										
SLC2A9	0	genome.wustl.edu	37	chr4	9828107	9828107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttgttccttttggaaaatgCctggctgatttctgcatagg	10	7	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	9828107	9828107	C	T	SNP	SLC2A9	ENST00000264784	human	ensembl	69_37n	-1	known	missense	c.1537	p.A513T	0.979	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667	354	1	0.28	209	113	35.09	-	-	-	T	9828107	C	T	9828107	3	4	548	1	0	0	0	0	1	0	0	0	14641	739	26	4	89	4	SLC2A9	4	9828107	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6377059	9828107	181326169	58	47821										
SLC34A2	0	genome.wustl.edu	37	chr4	25675985	25675985	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtcggggcaggcatgaccttCatcgtacagagcagctctgt	13	11	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	25675985	25675985	C	A	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	1	known	missense	c.1284	p.F428L	1.000	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	189	0	0	202	23	10.18	-	-	-	A	25675985	C	A	25675985	3	1	548	1	0	0	0	0	1	0	0	0	14657	825	29	2	1322	2	SLC34A2	4	25675985	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	15847878	25675985	165478291	59	47822										
POLR2B	0	genome.wustl.edu	37	chr4	57896449	57896452	+	Frame_Shift_Del	DEL	TTGT	TTGT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccagtttttaagggaaagaTtgtttgaggcatcagatcca							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TTGT	TTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	57896449	57896452	TTGT	-	DEL	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	frame_shift_del	c.3319_3322	p.F1108fs	0.436:0.999:1.000:1.000	pfam_RNA_pol_Rpb2_7	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	326	0	0	240	109	30.88	-	-	-	-	57896452	TTGT	-	57896449	7	5	548	1	0	1	0	1	0	0	0	0	12289	1490	52	0	3413	0	POLR2B	4	57896449	Frame_Shift_Del	DEL	TTGT	TCGA-BH-A0HA-01A-11D-A12Q-09	32220464	57896449	133257827	60	47823										
TMPRSS11F	0	genome.wustl.edu	37	chr4	68925078	68925078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttttccttccatgaatccaGcacataacattcctggagtt	5	11	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	68925078	68925078	G	A	SNP	TMPRSS11F	ENST00000356291	human	ensembl	69_37n	-1	known	missense	c.1124	p.A375V	1.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092	560	0	0	541	83	13.3	-	-	-	A	68925078	G	A	68925078	3	1	548	1	0	0	0	0	1	0	0	0	16338	971	34	4	200	4	TMPRSS11F	4	68925078	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	11028629	68925078	122229198	61	47824										
UGT2B4	0	genome.wustl.edu	37	chr4	70350946	70350946	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaaggatcattaattactgtCttcagtgcattgagtaagtc	8	6	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	70350946	70350946	C	T	SNP	UGT2B4	ENST00000305107	human	ensembl	69_37n	-1	known	silent	c.1290	p.K430	0.211	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	404	0	0	290	163	35.98	-	-	-	T	70350946	C	T	70350946	2	4	548	1	0	0	0	0	0	0	0	1	17058	912	32	2		2	UGT2B4	4	70350946	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1425868	70350946	120803330	62	47825										
CENPE	0	genome.wustl.edu	37	chr4	104096015	104096015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttcatagtctaataccagatTatcatagtcagcacgaagtg	7	8	4	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	104096015	104096015	T	C	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.1525	p.N509D	0.811	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	483	0	0	459	69	13.07	-	-	-	C	104096015	T	C	104096015	3	2	548	1	0	0	0	0	1	0	0	0	3259	1754	61	5	6716	5	CENPE	4	104096015	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	33745069	104096015	87058261	63	47826										
SEC24B	0	genome.wustl.edu	37	chr4	110442315	110442315	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tagtttacttgtgaatctatAtgaaagtaaagaggtaagat	9	2	1	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	110442315	110442315	A	G	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.2288	p.Y763C	0.995	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	419	0	0	400	200	33.33	-	-	-	G	110442315	A	G	110442315	3	3	548	1	0	0	0	0	1	0	0	0	14083	449	16	5	2338	5	SEC24B	4	110442315	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	6346300	110442315	80711961	64	47827										
SEC24D	0	genome.wustl.edu	37	chr4	119745855	119745855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggtgggggacccggaggcaaCattcccctagtggcggtggc	18	11	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	119745855	119745855	C	T	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.168	p.M56I	0.281	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	48	0	0	32	26	44.83	-	-	-	T	119745855	C	T	119745855	3	4	548	1	0	0	0	0	1	0	0	0	14085	478	17	4	3014	4	SEC24D	4	119745855	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	9303540	119745855	71408421	65	47828										
MAML3	0	genome.wustl.edu	37	chr4	140640648	140640648	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggggcattccgctcataggcTtggctctggctgcttggagc	15	11	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	140640648	140640648	T	C	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.3246	p.Q1082	0.497	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	51	0	0	47	35	42.68	-	-	-	C	140640648	T	C	140640648	2	2	548	1	0	0	0	0	0	0	0	1	9278	1606	56	5		5	MAML3	4	140640648	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	20894793	140640648	50513628	66	47829										
ADAM29	0	genome.wustl.edu	37	chr4	175897313	175897313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgataattatctgtacattCgttatgaaaggaacgactca	7	6	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	175897313	175897313	C	T	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.637	p.R213C	0.001	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	239	0	0	137	75	35.38	-	-	-	T	175897313	C	T	175897313	3	4	548	1	0	0	0	0	1	0	0	0	247	884	31	1	639	1	ADAM29	4	175897313	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	35256665	175897313	15256963	67	47830										
ODZ3	0	genome.wustl.edu	37	chr4	183714372	183714372	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acctgcgagacagaatcactCgactgggtgatgttcaatat	10	9	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	4	183714372	183714372	C	T	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	nonsense	c.6547	p.R2183*	0.997	superfamily_Cyt_c_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	169	0	0	121	86	41.55	-	-	-	T	183714372	C	T	183714372	4	4	548	1	0	0	0	0	0	1	0	0	10909	876	31	1	6645	1	ODZ3	4	183714372	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	7817059	183714372	7439904	68	47831										
NKD2	0	genome.wustl.edu	37	chr5	1033615	1033615	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcagcgcctcaacattgacGtgggtctctctccggcctca	11	15	4	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	1033615	1033615	G	A	SNP	NKD2	ENST00000296849	human	ensembl	69_37n	1	known	splice_site	c.330+1	e5+1	0.284	-	-	-	no_errors	NKD2	HGNC	ENSG00000145506	20	0	0	12	4	25	-	-	-	A	1033615	G	A	1033615	5	1	548	1	0	0	0	0	0	0	1	0	10514	1159	40	1	349	1	NKD2	5	1033615	Splice_Site	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		1033615	179881645	69	47832										
ADAMTS16	0	genome.wustl.edu	37	chr5	5242243	5242243	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gggaccgagaagcagcccccTgcccagcccagctacacttg	11	17	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	5242243	5242243	T	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.2601	p.P867	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	74	0	0	54	43	43.88	-	-	-	A	5242243	T	A	5242243	2	1	548	1	0	0	0	0	0	0	0	1	261	1567	55	5		5	ADAMTS16	5	5242243	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	4208628	5242243	175673017	70	47833										
KIAA0947	0	genome.wustl.edu	37	chr5	5465333	5465333	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtttatgaatttagcacaacAaaaaaggtatgtggctgctc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	5465333	5465333	A	-	DEL	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	frame_shift_del	c.5886	p.K1964fs	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	271	0	0	203	92	31.19	-	-	-	-	5465333	A	-	5465333	7	5	548	1	0	1	0	1	0	0	0	0	8254	117	5	0	5936	0	KIAA0947	5	5465333	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	223090	5465333	175449927	71	47834										
FAM173B	0	genome.wustl.edu	37	chr5	10239163	10239163	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tggtttcaaaccttaaaatgTtttagcagaactcacaatgc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	10239163	10239163	T	-	DEL	FAM173B	ENST00000504390	human	ensembl	69_37n	-1	known	frame_shift_del	c.322	p.T108fs	0.000	NULL	NULL	-	no_errors	FAM173B	HGNC	ENSG00000150756	119	0	0	117	17	12.69	-	-	-	-	10239163	T	-	10239163	7	5	548	1	0	1	0	1	0	0	0	0	5534	1740	60	0		0	FAM173B	5	10239163	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	4773830	10239163	170676097	72	47835										
DNAH5	0	genome.wustl.edu	37	chr5	13871098	13871098	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttgtctcagcagtcagggcGaacttcaagtcagctgtaaa	10	9	4	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	13871098	13871098	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.3612	p.F1204	0.099	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	157	0	0	73	45	38.14	-	-	-	A	13871098	G	A	13871098	2	1	548	1	0	0	0	0	0	0	0	1	4640	1049	37	1		1	DNAH5	5	13871098	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	3631935	13871098	167044162	73	47836										
POC5	0	genome.wustl.edu	37	chr5	74973684	74973684	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctaaactgctgctaattctaTtttttgaagcaaaatcacat							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	74973684	74973684	T	-	DEL	POC5	ENST00000428202	human	ensembl	69_37n	-1	known	frame_shift_del	c.1499	p.N500fs	0.001	NULL	NULL	-	no_errors	POC5	HGNC	ENSG00000152359	451	0	0	301	220	41.35	-	-	-	-	74973684	T	-	74973684	7	5	548	1	0	1	0	1	0	0	0	0	12251	1493	52	0	236	0	POC5	5	74973684	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	61102586	74973684	105941576	74	47837										
FAM151B	0	genome.wustl.edu	37	chr5	79797660	79797660	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttctgagaaatagccagatTacagcagaagacggtgctga	11	7	1	5			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	79797660	79797660	T	C	SNP	FAM151B	ENST00000282226	human	ensembl	69_37n	1	known	silent	c.75	p.I25	0.985	NULL	pfam_DUF2181	-	no_errors	FAM151B	HGNC	ENSG00000152380	142	0	0	152	50	24.75	-	-	-	C	79797660	T	C	79797660	2	2	548	1	0	0	0	0	0	0	0	1	5499	1742	61	5		5	FAM151B	5	79797660	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	4823976	79797660	101117600	75	47838										
CKMT2	0	genome.wustl.edu	37	chr5	80554943	80554943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtggttctacttgtaggtagAacggttaatccaagaacgag	12	6	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	80554943	80554943	A	G	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	missense	c.884	p.E295G	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	220	0	0	196	94	32.3	-	-	-	G	80554943	A	G	80554943	3	3	548	1	0	0	0	0	1	0	0	0	3481	246	9	5	910	5	CKMT2	5	80554943	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	757283	80554943	100360317	76	47839										
CAST	0	genome.wustl.edu	37	chr5	96101008	96101008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cctgacccagatgagaacaaAccaatggaagataaagtaaa	8	8	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	96101008	96101008	A	G	SNP	CAST	ENST00000484552	human	ensembl	69_37n	1	known	missense	c.991	p.T331A	0.993	pfam_Prot_inh_calpain	pfam_Prot_inh_calpain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CAST	HGNC	ENSG00000153113	154	1	0.65	61	26	29.55	-	-	-	G	96101008	A	G	96101008	3	3	548	1	0	0	0	0	1	0	0	0	2709	40	2	5	2242	5	CAST	5	96101008	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	15546065	96101008	84814252	77	47840										
APC	0	genome.wustl.edu	37	chr5	112175041	112175041	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caaaaggctgccacttgcaaAgtttcttctattaaccaaga	6	10	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	112175041	112175041	A	C	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.3750	p.K1250N	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	73	0	0	50	36	41.86	-	-	-	C	112175041	A	C	112175041	3	2	548	1	0	0	0	0	1	0	0	0	764	69	3	5	3808	5	APC	5	112175041	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	16074033	112175041	68740219	78	47841										
PCDHGA3	0	genome.wustl.edu	37	chr5	140724340	140724340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aatgtttactcagcctgagtAccgtgtgagtgtttgggaga	13	6	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	140724340	140724340	A	G	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.740	p.Y247C	0.997	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	56	0	0	54	25	31.65	-	-	-	G	140724340	A	G	140724340	3	3	548	1	0	0	0	0	1	0	0	0	11628	391	14	5	742	5	PCDHGA3	5	140724340	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	28549299	140724340	40190920	79	47842										
PCDHGB7	0	genome.wustl.edu	37	chr5	140799608	140799608	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctactgcaggagactgctttGagtcagttctctgctccaag	10	11	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	140799608	140799608	G	C	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.2182	p.E728Q	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	130	0	0	134	16	10.67	-	-	-	C	140799608	G	C	140799608	3	2	548	1	0	0	0	0	1	0	0	0	11641	1291	45	2	2184	2	PCDHGB7	5	140799608	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	75268	140799608	40115652	80	47843										
SQSTM1	0	genome.wustl.edu	37	chr5	179260660	179260660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtcttcaaaagaagtggaccCgtctacaggtgaactccagt	10	10	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	5	179260660	179260660	C	T	SNP	SQSTM1	ENST00000389805	human	ensembl	69_37n	1	known	missense	c.1043	p.P348L	1.000	NULL	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011	104	1	0.95	79	58	42.34	-	-	-	T	179260660	C	T	179260660	3	4	548	1	0	0	0	0	1	0	0	0	15221	652	23	1	1069	1	SQSTM1	5	179260660	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	38461052	179260660	1654600	81	47844										
ALDH5A1	0	genome.wustl.edu	37	chr6	24502792	24502792	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aagtggtacaatttaatgatAcaaaataaggatgaccttgc	8	5	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	24502792	24502792	A	G	SNP	ALDH5A1	ENST00000348925	human	ensembl	69_37n	1	known	missense	c.396	p.I132M	0.522	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294	541	0	0	511	305	37.33	-	-	-	G	24502792	A	G	24502792	3	3	548	1	0	0	0	0	1	0	0	0	502	381	14	5	402	5	ALDH5A1	6	24502792	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09		24502792	146612275	82	47845										
BTN2A1	0	genome.wustl.edu	37	chr6	26468547	26468547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agtccctttgccgggtgggcGtcttcctggactatgaagct	13	11	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	26468547	26468547	G	A	SNP	BTN2A1	ENST00000312541	human	ensembl	69_37n	1	known	missense	c.1354	p.V452I	0.034	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A1	HGNC	ENSG00000112763	284	0	0	198	127	39.08	-	-	-	A	26468547	G	A	26468547	3	1	548	1	0	0	0	0	1	0	0	0	1569	1145	40	1	1407	1	BTN2A1	6	26468547	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	1965755	26468547	144646520	83	47846										
TNXB	0	genome.wustl.edu	37	chr6	32049423	32049424	+	Frame_Shift_Ins	INS	-	-	G													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctgctccaggaactcagggcINSgggggggctcctctttcctc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	32049423	32049424	-	G	INS	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3764_3763	p.R1255fs	0.000:0.009	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	14	0	0	22	6	21.43	-	-	-	G	32049424	-	G	32049423	7	5	548	1	0	1	1	0	0	0	0	0	16441	768	27	0	11089	0	TNXB	6	32049423	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	5580876	32049423	139065644	84	47847										
VPS52	0	genome.wustl.edu	37	chr6	33235071	33235071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gggtgaaaatggtgttcctgCtgcggagcgatggctttgag	17	6	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	33235071	33235071	C	T	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	missense	c.1019	p.S340N	1.000	pfam_Vps52	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	134	0	0	154	26	14.44	-	-	-	T	33235071	C	T	33235071	3	4	548	1	0	0	0	0	1	0	0	0	17311	797	28	4	1192	4	VPS52	6	33235071	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1185648	33235071	137879996	85	47848										
KIAA0240	0	genome.wustl.edu	37	chr6	42797791	42797791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caggagatcagctgacccagCcaaacaggactccagtacca	9	14	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	42797791	42797791	C	T	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	missense	c.1720	p.P574S	1.000	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	121	0	0	140	19	11.95	-	-	-	T	42797791	C	T	42797791	3	4	548	1	0	0	0	0	1	0	0	0	8216	739	26	4	1734	4	KIAA0240	6	42797791	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	9562720	42797791	128317276	86	47849										
ENPP4	0	genome.wustl.edu	37	chr6	46107649	46107650	+	Frame_Shift_Ins	INS	-	-	T													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gactctaatgacaaggatccINStttttggtggaatgaggcag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	46107649	46107650	-	T	INS	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	frame_shift_ins	c.329_330	p.W112fs	1.000:0.956	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	86	0	0	30	15	33.33	-	-	-	T	46107650	-	T	46107649	7	5	548	1	0	1	1	0	0	0	0	0	5169	681	24	0	331	0	ENPP4	6	46107649	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	3309858	46107649	125007418	87	47850										
DST	0	genome.wustl.edu	37	chr6	56495093	56495095	+	In_Frame_Del	DEL	CTT	CTT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	attcttgtcagctataactgCttcttcttcacacagtttag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	56495093	56495095	CTT	-	DEL	DST	ENST00000370754	human	ensembl	69_37n	-1	known	in_frame_del	c.4132_4130	p.E1377in_frame_del	1.000:1.000:1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	264	0	0	226	99	30.46	-	-	-	-	56495095	CTT	-	56495093	7	5	548	1	0	1	0	1	0	0	0	0	4818	797	28	0	17807	0	DST	6	56495093	In_Frame_Del	DEL	CTT	TCGA-BH-A0HA-01A-11D-A12Q-09	10387444	56495093	114619974	88	47851										
RWDD2A	0	genome.wustl.edu	37	chr6	83904358	83904358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atttgtaattacactccagaTtgaagagcccaaggtaggta	9	7	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	83904358	83904358	T	C	SNP	RWDD2A	ENST00000369724	human	ensembl	69_37n	1	known	missense	c.188	p.I63T	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2A	HGNC	ENSG00000013392	119	0	0	176	23	11.56	-	-	-	C	83904358	T	C	83904358	3	2	548	1	0	0	0	0	1	0	0	0	13841	1493	52	5	190	5	RWDD2A	6	83904358	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	27409265	83904358	87210709	89	47852										
RFX6	0	genome.wustl.edu	37	chr6	117248313	117248313	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaggcccccaagtgtgggccCagtactgtcagctccatcac	11	15	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	117248313	117248313	C	A	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.2009	p.P670Q	0.126	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	193	0	0	74	25	25.25	-	-	-	A	117248313	C	A	117248313	3	1	548	1	0	0	0	0	1	0	0	0	13350	594	21	4	2075	4	RFX6	6	117248313	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	33343955	117248313	53866754	90	47853										
MED23	0	genome.wustl.edu	37	chr6	131923494	131923495	+	Frame_Shift_Del	DEL	TA	TA	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tctgagctacctaatgctgtTataagcctgagagcagtgct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	131923494	131923495	TA	-	DEL	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	frame_shift_del	c.1977_1976	p.I659fs	0.995:1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	232	0	0	53	49	47.57	-	-	-	-	131923495	TA	-	131923494	7	5	548	1	0	1	0	1	0	0	0	0	9512	1744	61	0	2206	0	MED23	6	131923494	Frame_Shift_Del	DEL	TA	TCGA-BH-A0HA-01A-11D-A12Q-09	14675181	131923494	39191573	91	47854										
HIVEP2	0	genome.wustl.edu	37	chr6	143095539	143095539	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaggctctgatgtggcttggTgctgtgcatgaccccctgtg	15	10	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	143095539	143095539	T	C	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.337	p.T113A	0.917	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	95	0	0	32	6	14.63	-	-	-	C	143095539	T	C	143095539	3	2	548	1	0	0	0	0	1	0	0	0	7238	1696	59	5	7027	5	HIVEP2	6	143095539	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	11172045	143095539	28019528	92	47855										
IYD	0	genome.wustl.edu	37	chr6	150715323	150715323	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtttcgccgcaaatggcaagAaaaaagtccactactacaat							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	6	150715323	150715323	A	-	DEL	IYD	ENST00000229447	human	ensembl	69_37n	1	known	frame_shift_del	c.619	p.V209fs	1.000	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	-	no_errors	IYD	HGNC	ENSG00000009765	225	0	0	88	80	45.98	-	-	-	-	150715323	A	-	150715323	7	5	548	1	0	1	0	1	0	0	0	0	7986	247	9	0	633	0	IYD	6	150715323	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	7619784	150715323	20399744	93	47856										
KLHL7	0	genome.wustl.edu	37	chr7	23145676	23145678	+	In_Frame_Del	DEL	AAG	AAG	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctggggtggagaagagcagcAagaagaagaccgagaagaaa							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	23145676	23145678	AAG	-	DEL	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	in_frame_del	c.31_33	p.K13in_frame_del	1.000:1.000:1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	66	0	0	75	31	29.25	-	-	-	-	23145678	AAG	-	23145676	7	5	548	1	0	1	0	1	0	0	0	0	8447	131	5	0	33	0	KLHL7	7	23145676	In_Frame_Del	DEL	AAG	TCGA-BH-A0HA-01A-11D-A12Q-09		23145676	135992987	94	47857										
FKBP9	0	genome.wustl.edu	37	chr7	33044891	33044891	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atgttcaccaaccaggaccgGaatggagatgggaaggtcac	13	9	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	33044891	33044891	G	A	SNP	FKBP9	ENST00000538336	human	ensembl	69_37n	1	known	silent	c.1800	p.R600	0.990	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642	520	0	0	613	75	10.9	-	-	-	A	33044891	G	A	33044891	2	1	548	1	0	0	0	0	0	0	0	1	5961	1161	41	2		2	FKBP9	7	33044891	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	9899215	33044891	126093772	95	47858										
TRIM50	0	genome.wustl.edu	37	chr7	72730631	72730632	+	Frame_Shift_Ins	INS	-	-	T													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagcctggtggaggcctggcINSttgaaggagatggggctgaa							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	72730631	72730632	-	T	INS	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	frame_shift_ins	c.807_806	p.P270fs	1.000:1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	73	0	0	92	14	13.21	-	-	-	T	72730632	-	T	72730631	7	5	548	1	0	1	1	0	0	0	0	0	16622	796	28	0	664	0	TRIM50	7	72730631	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	39685740	72730631	86408032	96	47859										
FZD9	0	genome.wustl.edu	37	chr7	72849076	72849076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cgctgtgcttcttctccaccGccttcactgtgctcaccttc	6	18	4	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	72849076	72849076	G	A	SNP	FZD9	ENST00000344575	human	ensembl	69_37n	1	known	missense	c.739	p.A247T	0.999	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763	61	0	0	41	18	30	-	-	-	A	72849076	G	A	72849076	3	1	548	1	0	0	0	0	1	0	0	0	6186	1087	38	1	741	1	FZD9	7	72849076	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	118445	72849076	86289587	97	47860										
DTX2	0	genome.wustl.edu	37	chr7	76126704	76126704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gactccctgtgtgtcttagcCgcgcaccccagcccaccagc	9	19	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	76126704	76126704	C	T	SNP	DTX2	ENST00000324432	human	ensembl	69_37n	1	known	missense	c.1060	p.R354C	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	Clone_based_vega_gene	ENSG00000091073	98	0	0	130	48	26.97	-	-	-	T	76126704	C	T	76126704	3	4	548	1	0	0	0	0	1	0	0	0	4829	652	23	1	1074	1	DTX2	7	76126704	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3277628	76126704	83011959	98	47861										
GRM3	0	genome.wustl.edu	37	chr7	86468223	86468223	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttttggagatggaatggggCgatacaacgtgttcaatttc	12	6	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	86468223	86468223	C	T	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	nonsense	c.1393	p.R465*	0.677	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	134	0	0	72	27	27.27	-	-	-	T	86468223	C	T	86468223	4	4	548	1	0	0	0	0	0	1	0	0	6849	760	27	1	1403	1	GRM3	7	86468223	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	10341519	86468223	72670440	99	47862										
ARPC1B	0	genome.wustl.edu	37	chr7	98991736	98991736	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcggcatgagtatctgggaTgtgaaggtgaggcttgcccc	17	8	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	98991736	98991736	T	C	SNP	ARPC1B	ENST00000252725	human	ensembl	69_37n	1	known	silent	c.1074	p.D358	0.671	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1B	HGNC	ENSG00000130429	56	0	0	47	19	28.79	-	-	-	C	98991736	T	C	98991736	2	2	548	1	0	0	0	0	0	0	0	1	974	1461	51	5		5	ARPC1B	7	98991736	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	12523513	98991736	60146927	100	47863										
AP4M1	0	genome.wustl.edu	37	chr7	99704464	99704464	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccaacccccacaagtgggtgCgacacctaagccacagcgac	9	17	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	99704464	99704464	C	T	SNP	AP4M1	ENST00000359593	human	ensembl	69_37n	1	known	nonsense	c.1321	p.R441*	0.996	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	29	0	0	33	10	23.26	-	-	-	T	99704464	C	T	99704464	4	4	548	1	0	0	0	0	0	1	0	0	754	760	27	1	1379	1	AP4M1	7	99704464	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	712728	99704464	59434199	101	47864										
PUS7	0	genome.wustl.edu	37	chr7	105148864	105148864	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctgcattccgacagcttctgTttttttgtctcttcaactgg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	105148864	105148864	T	-	DEL	PUS7	ENST00000356362	human	ensembl	69_37n	-1	known	frame_shift_del	c.96	p.K32fs	0.986	pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127	437	0	0	339	180	34.16	-	-	-	-	105148864	T	-	105148864	7	5	548	1	0	1	0	1	0	0	0	0	12916	1722	60	0	1949	0	PUS7	7	105148864	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	5444400	105148864	53989799	102	47865										
HBP1	0	genome.wustl.edu	37	chr7	106836466	106836466	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctttgtatgctaaagctgtcAaaaaccacagctcagggact							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	106836466	106836466	A	-	DEL	HBP1	ENST00000222574	human	ensembl	69_37n	1	known	frame_shift_del	c.1255	p.N420fs	1.000	superfamily_HMG_superfamily	pfam_Ataxin-1_HBP1,pfam_HMG_superfamily,superfamily_Ataxin-1_HBP1,superfamily_HMG_superfamily,smart_Ataxin_AXH_dom,smart_HMG_superfamily,pfscan_Ataxin-1_HBP1,pfscan_HMG_superfamily	-	no_errors	HBP1	HGNC	ENSG00000105856	173	0	0	189	22	10.33	-	-	-	-	106836466	A	-	106836466	7	5	548	1	0	1	0	1	0	0	0	0	7036	131	5	0	1285	0	HBP1	7	106836466	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	1687602	106836466	52302197	103	47866										
FLNC	0	genome.wustl.edu	37	chr7	128488091	128488091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acgggccctacacggtagccGtcaagtatgctgaccaggag	13	12	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	128488091	128488091	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.4549	p.V1517I	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	17	0	0	19	14	42.42	-	-	-	A	128488091	G	A	128488091	3	1	548	1	0	0	0	0	1	0	0	0	5981	1145	40	1	4651	1	FLNC	7	128488091	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	21651625	128488091	30650572	104	47867										
ZNF786	0	genome.wustl.edu	37	chr7	148769157	148769157	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cacaccggaagtgcctctgtAcccgagggctgctccacggc	12	16	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	148769157	148769157	A	G	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.707	p.V236A	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	31	0	0	24	15	35.71	-	-	-	G	148769157	A	G	148769157	3	3	548	1	0	0	0	0	1	0	0	0	18251	391	14	5	1645	5	ZNF786	7	148769157	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	20281066	148769157	10369506	105	47868										
ZNF282	0	genome.wustl.edu	37	chr7	148921569	148921569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agagcttcatccgcaagcagAacctgctcaagcaccagcgc	9	15	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	148921569	148921569	A	G	SNP	ZNF282	ENST00000262085	human	ensembl	69_37n	1	known	missense	c.1846	p.N616D	0.957	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265	29	0	0	33	22	40	-	-	-	G	148921569	A	G	148921569	3	3	548	1	0	0	0	0	1	0	0	0	17915	246	9	5	1876	5	ZNF282	7	148921569	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	152412	148921569	10217094	106	47869										
GALNTL5	0	genome.wustl.edu	37	chr7	151699798	151699798	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccctgttcttgcctccccaGgggatgttctggtgttcctg	12	13	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	151699798	151699798	G	A	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	splice_site	c.659-1	e5-1	1.000	-	-	-	no_errors	GALNTL5	HGNC	ENSG00000106648	155	0	0	104	43	29.25	-	-	-	A	151699798	G	A	151699798	5	1	548	1	0	0	0	0	0	0	1	0	6274	1014	35	4	676	4	GALNTL5	7	151699798	Splice_Site	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	2778229	151699798	7438865	107	47870										
GALNT11	0	genome.wustl.edu	37	chr7	151805352	151805352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tctgagctaggacgagcggaGggagccactgcaccaataaa	13	10	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	151805352	151805352	G	T	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	missense	c.942	p.E314D	0.138	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234	51	0	0	56	17	23.29	-	-	-	T	151805352	G	T	151805352	3	4	548	1	0	0	0	0	1	0	0	0	6259	991	35	4	960	4	GALNT11	7	151805352	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	105554	151805352	7333311	108	47871										
UBE3C	0	genome.wustl.edu	37	chr7	157009636	157009636	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtcctccaaaccactggctgTcagaacaagaagatattaaa	7	10	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	7	157009636	157009636	T	C	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	missense	c.1885	p.S629P	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	159	0	0	217	32	12.75	-	-	-	C	157009636	T	C	157009636	3	2	548	1	0	0	0	0	1	0	0	0	16978	1667	58	5	1939	5	UBE3C	7	157009636	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	5204284	157009636	2129027	109	47872										
CSMD1	0	genome.wustl.edu	37	chr8	2815319	2815319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttctgcacctgaaaaaaaccGtgcttccaacctagagagga	8	11	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	2815319	2815319	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9716	p.T3239M	0.156	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	152	1	0.65	142	26	15.38	-	-	-	A	2815319	G	A	2815319	3	1	548	1	0	0	0	0	1	0	0	0	3976	1145	40	1	1013	1	CSMD1	8	2815319	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		2815319	143548703	110	47873										
RP1L1	0	genome.wustl.edu	37	chr8	10470757	10470757	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgccaggagcagggcccaccGgggggttgctaggaccaggc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	10470757	10470757	G	-	DEL	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	frame_shift_del	c.851	p.P284fs	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	20	0	0	23	10	30.3	-	-	-	-	10470757	G	-	10470757	7	5	548	1	0	1	0	1	0	0	0	0	13619	1116	39	0	6355	0	RP1L1	8	10470757	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	7655438	10470757	135893265	111	47874										
XPO7	0	genome.wustl.edu	37	chr8	21844747	21844747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gagcttttttgaacagtttcGtaagatctacattggggacc	10	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	21844747	21844747	G	A	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	missense	c.1700	p.R567H	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	147	0	0	192	26	11.93	-	-	-	A	21844747	G	A	21844747	3	1	548	1	0	0	0	0	1	0	0	0	17546	1145	40	1	1779	1	XPO7	8	21844747	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	11373990	21844747	124519275	112	47875										
FUT10	0	genome.wustl.edu	37	chr8	33318928	33318928	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaagacggtggctgtgacgcAcaggcaagatgccaaaagct	13	9	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	33318928	33318928	A	G	SNP	FUT10	ENST00000524021	human	ensembl	69_37n	-1	novel	splice_site	c.1+2	e0+2	0.704	-	-	-	no_errors	FUT10	HGNC	ENSG00000172728	105	0	0	82	39	32.23	-	-	-	G	33318928	A	G	33318928	5	3	548	1	0	0	0	0	0	0	1	0	6151	159	6	5	1412	5	FUT10	8	33318928	Splice_Site	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	11474181	33318928	113045094	113	47876										
GINS4	0	genome.wustl.edu	37	chr8	41397268	41397268	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggggagccttccagcctctcGccggaagagttggcctttgc	14	13	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	41397268	41397268	G	A	SNP	GINS4	ENST00000276533	human	ensembl	69_37n	1	known	silent	c.369	p.S123	0.817	pfam_GINS_complex,pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536	107	0	0	118	14	10.61	-	-	-	A	41397268	G	A	41397268	2	1	548	1	0	0	0	0	0	0	0	1	6442	1074	38	1		1	GINS4	8	41397268	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	8078340	41397268	104966754	114	47877										
SLC20A2	0	genome.wustl.edu	37	chr8	42295045	42295045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccgtcgaagccgaaggtgcCgttggagatgggcgatttca	16	9	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	42295045	42295045	C	T	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	missense	c.985	p.G329S	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	70	0	0	60	40	40	-	-	-	T	42295045	C	T	42295045	3	4	548	1	0	0	0	0	1	0	0	0	14528	652	23	1	989	1	SLC20A2	8	42295045	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	897777	42295045	104068977	115	47878										
PEX2	0	genome.wustl.edu	37	chr8	77896091	77896091	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cacctgccaccaattgtacaAacagcataccagattttttg	5	12	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	77896091	77896091	A	G	SNP	PEX2	ENST00000357039	human	ensembl	69_37n	-1	known	silent	c.324	p.V108	0.905	pfam_Pex_N	pfam_Pex_N,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX2	HGNC	ENSG00000164751	137	0	0	100	64	39.02	-	-	-	G	77896091	A	G	77896091	2	3	548	1	0	0	0	0	0	0	0	1	11819	1	1	5		5	PEX2	8	77896091	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	35601046	77896091	68467931	116	47879										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885440	88885440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gctgccttgatttccacagcGcagatcaatgccaaagatct	8	12	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	88885440	88885440	G	A	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.760	p.R254C	0.994	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	141	0	0	129	67	34.18	-	-	-	A	88885440	G	A	88885440	3	1	548	1	0	0	0	0	1	0	0	0	4304	1087	38	1	431	1	DCAF4L2	8	88885440	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	10989349	88885440	57478582	117	47880										
INTS8	0	genome.wustl.edu	37	chr8	95869179	95869179	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccgaccttataagtagagtaCgaggctatctggaaatgagg	12	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	95869179	95869179	C	T	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	nonsense	c.1927	p.R643*	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	86	0	0	56	39	41.05	-	-	-	T	95869179	C	T	95869179	4	4	548	1	0	0	0	0	0	1	0	0	7838	528	19	1	1985	1	INTS8	8	95869179	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6983739	95869179	50494843	118	47881										
TMEM74	0	genome.wustl.edu	37	chr8	109796495	109796495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tggttttcatcctgaagttgAaagaaccatagagttttgca	9	6	1	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	109796495	109796495	A	G	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.833	p.F278S	1.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	201	0	0	152	78	33.91	-	-	-	G	109796495	A	G	109796495	3	3	548	1	0	0	0	0	1	0	0	0	16297	246	9	5	88	5	TMEM74	8	109796495	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	13927316	109796495	36567527	119	47882										
WISP1	0	genome.wustl.edu	37	chr8	134237699	134237699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cacaagcccctggagcccttGctccaccagctgcggcctgg	11	18	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	8	134237699	134237699	G	A	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	1	known	missense	c.677	p.C226Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	45	0	0	26	19	41.3	-	-	-	A	134237699	G	A	134237699	3	1	548	1	0	0	0	0	1	0	0	0	17469	1319	46	4	691	4	WISP1	8	134237699	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	24441204	134237699	12126323	120	47883										
KIAA2026	0	genome.wustl.edu	37	chr9	5969043	5969043	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aactgaggacacaaccccagTttttcagcacagttatcagg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	5969043	5969043	T	-	DEL	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1188	p.K396fs	0.974	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	82	0	0	57	20	25.32	-	-	-	-	5969043	T	-	5969043	7	5	548	1	0	1	0	1	0	0	0	0	8322	1722	60	0	5147	0	KIAA2026	9	5969043	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09		5969043	135244388	121	47884										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18775842	18775842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtcaattccaccctgtgcccGcccctgcctttctcttcctc	5	20	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	18775842	18775842	G	A	SNP	ADAMTSL1	ENST00000380548	human	ensembl	69_37n	1	novel	silent	c.2499	p.P833	0.013	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	141	0	0	82	50	36.23	-	-	-	A	18775842	G	A	18775842	2	1	548	1	0	0	0	0	0	0	0	1	274	1074	38	1		1	ADAMTSL1	9	18775842	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	12806799	18775842	122437589	122	47885										
IFNA16	0	genome.wustl.edu	37	chr9	21216922	21216922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcagggcaatctcttccaccCcaacctcctgtgtcacacag	6	17	3	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	21216922	21216922	C	T	SNP	IFNA16	ENST00000380216	human	ensembl	69_37n	-1	known	missense	c.383	p.G128E	0.001	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885	380	0	0	230	94	29.01	-	-	-	T	21216922	C	T	21216922	3	4	548	1	0	0	0	0	1	0	0	0	7589	623	22	4	190	4	IFNA16	9	21216922	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	2441080	21216922	119996509	123	47886										
NPR2	0	genome.wustl.edu	37	chr9	35792578	35792578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agctgtggaggctctgggccGggcactgcccgtggacctgc	17	13	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	35792578	35792578	G	A	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.173	p.R58Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	16	0	0	12	4	25	-	-	-	A	35792578	G	A	35792578	3	1	548	1	0	0	0	0	1	0	0	0	10668	1116	39	1	175	1	NPR2	9	35792578	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	14575656	35792578	105420853	124	47887										
PRUNE2	0	genome.wustl.edu	37	chr9	79319782	79319782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gttggagcctgctcctaccgGcaaataaacggactcagggt	12	11	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	79319782	79319782	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.6331	p.P2111S	0.001	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	168	0	0	101	60	37.27	-	-	-	A	79319782	G	A	79319782	3	1	548	1	0	0	0	0	1	0	0	0	12721	1203	42	4	1906	4	PRUNE2	9	79319782	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	43527204	79319782	61893649	125	47888										
ZCCHC6	0	genome.wustl.edu	37	chr9	88938113	88938113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttcctcctcctcttcttcgTcgtcctcctcctcttcatca	2	20	5	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	88938113	88938113	T	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.2552	p.D851G	0.871	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	172	0	0	105	42	28.57	-	-	-	C	88938113	T	C	88938113	3	2	548	1	0	0	0	0	1	0	0	0	17688	1667	58	5	1995	5	ZCCHC6	9	88938113	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	9618331	88938113	52275318	126	47889										
WNK2	0	genome.wustl.edu	37	chr9	96060333	96060333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctggtgcggcagctcaaggtCgtggcctccagcacaggtcg	15	13	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	96060333	96060333	C	T	SNP	WNK2	ENST00000453718	human	ensembl	69_37n	1	putative	missense	c.1472	p.S491L	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WNK2	HGNC	ENSG00000165238	9	0	0	9	11	55	-	-	-	T	96060333	C	T	96060333	3	4	548	1	0	0	0	0	1	0	0	0	17475	871	31	1	5997	1	WNK2	9	96060333	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	7122220	96060333	45153098	127	47890										
FKBP15	0	genome.wustl.edu	37	chr9	115936859	115936859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acttctttttcctttctgagAggttcttaggaacaagagaa	8	7	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	115936859	115936859	A	G	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	missense	c.2228	p.L743P	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	138	0	0	116	22	15.83	-	-	-	G	115936859	A	G	115936859	3	3	548	1	0	0	0	0	1	0	0	0	5951	304	11	5	1459	5	FKBP15	9	115936859	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	19876526	115936859	25276572	128	47891										
TRIM32	0	genome.wustl.edu	37	chr9	119460577	119460577	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caaggtataaagcagttctcCaggagtatgggcatgaggag	14	6	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	119460577	119460577	C	T	SNP	TRIM32	ENST00000373983	human	ensembl	69_37n	1	known	nonsense	c.556	p.Q186*	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401	71	0	0	55	38	40.86	-	-	-	T	119460577	C	T	119460577	4	4	548	1	0	0	0	0	0	1	0	0	16602	595	21	4	558	4	TRIM32	9	119460577	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3523718	119460577	21752854	129	47892										
SLC27A4	0	genome.wustl.edu	37	chr9	131115028	131115028	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tatcaagtacaactgcacggTgagcgagagcgggaagggtg	16	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	131115028	131115028	T	C	SNP	SLC27A4	ENST00000300456	human	ensembl	69_37n	1	known	splice_site	c.987+2	e6+2	1.000	-	-	-	no_errors	SLC27A4	HGNC	ENSG00000167114	73	0	0	66	16	19.51	-	-	-	C	131115028	T	C	131115028	5	2	548	1	0	0	0	0	0	0	1	0	14617	1710	59	5	1011	5	SLC27A4	9	131115028	Splice_Site	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	11654451	131115028	10098403	130	47893										
CRAT	0	genome.wustl.edu	37	chr9	131864323	131864323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcccgtcactgtggtacacaTccagctcaaaaaactgttgg	8	12	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	131864323	131864323	T	C	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.644	p.D215G	0.994	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	145	1	0.68	148	36	19.57	-	-	-	C	131864323	T	C	131864323	3	2	548	1	0	0	0	0	1	0	0	0	3877	1435	50	5	1272	5	CRAT	9	131864323	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	749295	131864323	9349108	131	47894										
GPSM1	0	genome.wustl.edu	37	chr9	139243205	139243206	+	Frame_Shift_Del	DEL	CT	CT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agacctgggacctgctgagaCtccccctggagcgggtgagc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	139243205	139243206	CT	-	DEL	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	frame_shift_del	c.1264_1265	p.L422fs	1.000:1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	20	0	0	19	10	33.33	-	-	-	-	139243206	CT	-	139243205	7	5	548	1	0	1	0	1	0	0	0	0	6785	565	20	0	1469	0	GPSM1	9	139243205	Frame_Shift_Del	DEL	CT	TCGA-BH-A0HA-01A-11D-A12Q-09	7378882	139243205	1970226	132	47895										
DPP7	0	genome.wustl.edu	37	chr9	140006430	140006430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agtgaagggcaggtccgggaAcatatcggtcacattgttgc	14	8	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	9	140006430	140006430	A	G	SNP	DPP7	ENST00000371579	human	ensembl	69_37n	-1	known	missense	c.1102	p.F368L	1.000	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978	64	0	0	58	30	34.09	-	-	-	G	140006430	A	G	140006430	3	3	548	1	0	0	0	0	1	0	0	0	4766	43	2	5	392	5	DPP7	9	140006430	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	763225	140006430	1207001	133	47896										
FAM171A1	0	genome.wustl.edu	37	chr10	15262985	15262985	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggccacccagtaccccaactGgggggcaatgtatgtccacg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	15262985	15262985	G	-	DEL	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	frame_shift_del	c.829	p.Q277fs	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	45	0	0	24	12	32.43	-	-	-	-	15262985	G	-	15262985	7	5	548	1	0	1	0	1	0	0	0	0	5530	1357	47	0	1855	0	FAM171A1	10	15262985	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09		15262985	120271762	134	47897										
MAP3K8	0	genome.wustl.edu	37	chr10	30747044	30747044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccagaggtcatcctgtgcaGgggccattcaaccaaagcag	11	13	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	30747044	30747044	G	T	SNP	MAP3K8	ENST00000263056	human	ensembl	69_37n	1	known	missense	c.905	p.R302M	0.994	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	85	0	0	81	11	11.96	-	-	-	T	30747044	G	T	30747044	3	4	548	1	0	0	0	0	1	0	0	0	9327	1000	35	4	923	4	MAP3K8	10	30747044	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	15484059	30747044	104787703	135	47898										
ARHGAP22	0	genome.wustl.edu	37	chr10	49659122	49659122	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcccttccgggaccggtgcCgtgaagagctggctgtgttt	16	11	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	49659122	49659122	C	T	SNP	ARHGAP22	ENST00000417912	human	ensembl	69_37n	-1	known	silent	c.1098	p.T366	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805	41	0	0	27	22	44.9	-	-	-	T	49659122	C	T	49659122	2	4	548	1	0	0	0	0	0	0	0	1	874	639	23	1		1	ARHGAP22	10	49659122	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	18912078	49659122	85875625	136	47899										
SLC18A3	0	genome.wustl.edu	37	chr10	50819070	50819070	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caatgccagcgcctacacggCcaacacctcggcgtccccga	9	19	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	50819070	50819070	C	T	SNP	SLC18A3	ENST00000374115	human	ensembl	69_37n	1	known	missense	c.284	p.A95V	0.107	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714	22	0	0	14	5	26.32	-	-	-	T	50819070	C	T	50819070	3	4	548	1	0	0	0	0	1	0	0	0	14516	739	26	4	286	4	SLC18A3	10	50819070	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1159948	50819070	84715677	137	47900										
LRIT1	0	genome.wustl.edu	37	chr10	86001143	86001144	+	Frame_Shift_Ins	INS	-	-	G													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggggcagaagccccgggcctINSgggggggccacgcaagggcc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	86001143	86001144	-	G	INS	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	frame_shift_ins	c.53_52	p.Q18fs	0.289:0.600	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	9	0	0	8	6	42.86	-	-	-	G	86001144	-	G	86001143	7	5	548	1	0	1	1	0	0	0	0	0	9013	1580	55	0	1834	0	LRIT1	10	86001143	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	35182073	86001143	49533604	138	47901										
HECTD2	0	genome.wustl.edu	37	chr10	93247499	93247499	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcaaaaaaaatcattattcaGagagactcagagcaacagat	7	7	3	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	93247499	93247499	G	C	SNP	HECTD2	ENST00000446394	human	ensembl	69_37n	1	known	missense	c.1167	p.Q389H	0.730	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	347	1	0.29	319	51	13.78	-	-	-	C	93247499	G	C	93247499	3	2	548	1	0	0	0	0	1	0	0	0	7091	933	33	2	1221	2	HECTD2	10	93247499	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	7246356	93247499	42287248	139	47902										
SORBS1	0	genome.wustl.edu	37	chr10	97170460	97170460	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggataggcggatgaaggcttGctaactgatggaaaggcttg	16	5	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	97170460	97170460	G	A	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	silent	c.885	p.S295	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	211	0	0	190	35	15.56	-	-	-	A	97170460	G	A	97170460	2	1	548	1	0	0	0	0	0	0	0	1	15016	1310	46	4		4	SORBS1	10	97170460	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	3922961	97170460	38364287	140	47903										
ZDHHC16	0	genome.wustl.edu	37	chr10	99211936	99211936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctcatcctccgaacctactcAgtgccacgactctgctggca	7	17	3	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	99211936	99211936	A	G	SNP	ZDHHC16	ENST00000420089	human	ensembl	69_37n	1	known	missense	c.260	p.Q87R	0.178	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZDHHC16	HGNC	ENSG00000171307	170	0	0	154	61	28.24	-	-	-	G	99211936	A	G	99211936	3	3	548	1	0	0	0	0	1	0	0	0	17702	175	7	5	339	5	ZDHHC16	10	99211936	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	2041476	99211936	36322811	141	47904										
GBF1	0	genome.wustl.edu	37	chr10	104122393	104122393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccagaccaagctgtgagatAgtagatggcacccgagaagc	13	10	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	104122393	104122393	A	G	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.1845	p.I615M	0.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	259	0	0	237	96	28.83	-	-	-	G	104122393	A	G	104122393	3	3	548	1	0	0	0	0	1	0	0	0	6321	410	15	5	1899	5	GBF1	10	104122393	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	4910457	104122393	31412354	142	47905										
CCDC147	0	genome.wustl.edu	37	chr10	106118199	106118199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttctggagacaaaagtttggAaaaatttcggattgaatatg	10	3	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	106118199	106118199	A	G	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.110	p.E37G	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	151	0	0	129	42	24.56	-	-	-	G	106118199	A	G	106118199	3	3	548	1	0	0	0	0	1	0	0	0	2806	246	9	5	116	5	CCDC147	10	106118199	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	1995806	106118199	29416548	143	47906										
ATRNL1	0	genome.wustl.edu	37	chr10	117221463	117221463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccctacagacagccttttgaTtgattatcaatttaccttca	4	11	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	117221463	117221463	T	C	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	missense	c.3335	p.I1112T	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	633	0	0	312	192	38.1	-	-	-	C	117221463	T	C	117221463	3	2	548	1	0	0	0	0	1	0	0	0	1211	1493	52	5	3421	5	ATRNL1	10	117221463	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	11103264	117221463	18313284	144	47907										
TACC2	0	genome.wustl.edu	37	chr10	123844494	123844494	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agtggcccctactatcttctGagaagcatctccagccatcc	7	15	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	123844494	123844494	G	C	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.2479	p.E827Q	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	135	0	0	149	17	10.24	-	-	-	C	123844494	G	C	123844494	3	2	548	1	0	0	0	0	1	0	0	0	15594	1291	45	2	2489	2	TACC2	10	123844494	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	6623031	123844494	11690253	145	47908										
CPXM2	0	genome.wustl.edu	37	chr10	125521407	125521407	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttccagcgacggtgtgccaGgaggccccattgacagtgcc	13	14	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	10	125521407	125521407	G	T	SNP	CPXM2	ENST00000241305	human	ensembl	69_37n	-1	known	silent	c.1758	p.S586	0.993	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898	36	0	0	16	19	54.29	-	-	-	T	125521407	G	T	125521407	2	4	548	1	0	0	0	0	0	0	0	1	3868	987	35	4		4	CPXM2	10	125521407	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	1676913	125521407	10013340	146	47909										
PIK3C2A	0	genome.wustl.edu	37	chr11	17122898	17122900	+	In_Frame_Del	DEL	AAC	AAC	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cctgacagcagaggtccacaAacaactgaaaacgaatggtg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	17122898	17122900	AAC	-	DEL	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	in_frame_del	c.3935_3933	p.L1311in_frame_del	1.000:1.000:1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	302	0	0	245	132	34.83	-	-	-	-	17122900	AAC	-	17122898	7	5	548	1	0	1	0	1	0	0	0	0	11983	14	1	0	1161	0	PIK3C2A	11	17122898	In_Frame_Del	DEL	AAC	TCGA-BH-A0HA-01A-11D-A12Q-09		17122898	117883618	147	47910										
MRGPRX1	0	genome.wustl.edu	37	chr11	18955816	18955816	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atgaaatctgatgtttgacaCcaagcagaatcagcaccact	7	10	2	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	18955816	18955816	C	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	nonsense	c.516	p.W172*	0.009	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	299	0	0	245	142	36.69	-	-	-	T	18955816	C	T	18955816	4	4	548	1	0	0	0	0	0	1	0	0	9838	508	18	4	456	4	MRGPRX1	11	18955816	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1832918	18955816	116050700	148	47911										
NAT10	0	genome.wustl.edu	37	chr11	34164994	34164994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttcccttcttttttttagatAcataatccgtggggacgatg	8	8	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	34164994	34164994	A	G	SNP	NAT10	ENST00000257829	human	ensembl	69_37n	1	known	missense	c.2888	p.Y963C	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	382	0	0	428	96	18.29	-	-	-	G	34164994	A	G	34164994	3	3	548	1	0	0	0	0	1	0	0	0	10246	391	14	5	2994	5	NAT10	11	34164994	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	15209178	34164994	100841522	149	47912										
LRP4	0	genome.wustl.edu	37	chr11	46898298	46898298	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctaggaggaaggcccacctgTggtgatgatgtcctcatgct	13	10	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	46898298	46898298	T	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.3361	p.T1121A	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	57	0	0	69	11	13.75	-	-	-	C	46898298	T	C	46898298	3	2	548	1	0	0	0	0	1	0	0	0	9025	1696	59	5	2416	5	LRP4	11	46898298	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	12733304	46898298	88108218	150	47913										
OR5T2	0	genome.wustl.edu	37	chr11	55999765	55999765	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcatagctggaacttggtctCacatacatgaagaggattgt	11	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	55999765	55999765	C	T	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	silent	c.897	p.V299	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	257	0	0	240	33	12.09	-	-	-	T	55999765	C	T	55999765	2	4	548	1	0	0	0	0	0	0	0	1	11255	813	29	2		2	OR5T2	11	55999765	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	9101467	55999765	79006751	151	47914										
C11orf84	0	genome.wustl.edu	37	chr11	63585474	63585474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cggccgacacagctcgctcgCacatcttggagcagcaccct	10	17	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	63585474	63585474	C	T	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	1	known	missense	c.325	p.H109Y	0.927	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	65	0	0	49	41	45.56	-	-	-	T	63585474	C	T	63585474	3	4	548	1	0	0	0	0	1	0	0	0	1678	710	25	4	331	4	C11orf84	11	63585474	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	7585709	63585474	71421042	152	47915										
SPDYC	0	genome.wustl.edu	37	chr11	64938932	64938932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caatgggttcctccgttttcGccagcaccaggaggtccagg	12	13	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	64938932	64938932	G	A	SNP	SPDYC	ENST00000377185	human	ensembl	69_37n	1	known	missense	c.161	p.R54H	0.000	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710	63	0	0	38	24	38.71	-	-	-	A	64938932	G	A	64938932	3	1	548	1	0	0	0	0	1	0	0	0	15119	1087	38	1	167	1	SPDYC	11	64938932	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	1353458	64938932	70067584	153	47916										
ACTN3	0	genome.wustl.edu	37	chr11	66328165	66328165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccagacgtatgggctgcggcCctgctccaccaatccctaca	9	17	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	66328165	66328165	C	A	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	missense	c.1928	p.P643H	0.974	NULL	NULL	-	pseudogene	ACTN3	HGNC	ENSG00000248746	71	0	0	62	18	22.5	-	-	-	A	66328165	C	A	66328165	3	1	548	1	0	0	0	0	1	0	0	0	206	623	22	4	1857	4	ACTN3	11	66328165	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1389233	66328165	68678351	154	47917										
RAD9A	0	genome.wustl.edu	37	chr11	67163284	67163286	+	In_Frame_Del	DEL	GAG	GAG	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcatcctgcgcagctaccacGaggaggaggcaggtgagggg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	67163284	67163286	GAG	-	DEL	RAD9A	ENST00000307980	human	ensembl	69_37n	1	known	in_frame_del	c.547_549	p.E185in_frame_del	1.000:1.000:0.998	pfam_Rad9,pirsf_Cell_cycle_RAD9	pfam_Rad9,pirsf_Cell_cycle_RAD9	-	no_errors	RAD9A	HGNC	ENSG00000172613	35	0	0	31	6	16.22	-	-	-	-	67163286	GAG	-	67163284	7	5	548	1	0	1	0	1	0	0	0	0	13078	1059	37	0	569	0	RAD9A	11	67163284	In_Frame_Del	DEL	GAG	TCGA-BH-A0HA-01A-11D-A12Q-09	835119	67163284	67843232	155	47918										
TBC1D10C	0	genome.wustl.edu	37	chr11	67171808	67171808	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cgctatggattcattgggggCagctcagcagagccagggta	15	9	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	67171808	67171808	C	T	SNP	TBC1D10C	ENST00000312390	human	ensembl	69_37n	1	known	silent	c.135	p.G45	0.999	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	19	0	0	8	6	42.86	-	-	-	T	67171808	C	T	67171808	2	4	548	1	0	0	0	0	0	0	0	1	15692	697	25	4		4	TBC1D10C	11	67171808	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	8524	67171808	67834708	156	47919										
INTS4	0	genome.wustl.edu	37	chr11	77618841	77618841	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aattcagattgaagttctccAagtctttgcagatccctata	6	9	3	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	77618841	77618841	A	G	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	silent	c.1938	p.L646	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	184	0	0	178	94	34.56	-	-	-	G	77618841	A	G	77618841	2	3	548	1	0	0	0	0	0	0	0	1	7834	117	5	5		5	INTS4	11	77618841	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	10447033	77618841	57387675	157	47920										
MMP20	0	genome.wustl.edu	37	chr11	102465418	102465418	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atccacattggacatgagctGggggaaggagctggtaatag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	102465418	102465418	G	-	DEL	MMP20	ENST00000260228	human	ensembl	69_37n	-1	known	frame_shift_del	c.1024	p.Q342fs	1.000	pirsf_Pept_M10A_matrix_strom,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP20	HGNC	ENSG00000137674	132	0	0	106	17	13.6	-	-	-	-	102465418	G	-	102465418	7	5	548	1	0	1	0	1	0	0	0	0	9730	1357	47	0	443	0	MMP20	11	102465418	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	24846577	102465418	32541098	158	47921										
TIRAP	0	genome.wustl.edu	37	chr11	126162826	126162826	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gctccaggggccgagggctgCaccatccccctgctgtcggg	15	16	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	11	126162826	126162826	C	T	SNP	TIRAP	ENST00000392678	human	ensembl	69_37n	1	known	silent	c.522	p.C174	1.000	superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	-	no_errors	TIRAP	HGNC	ENSG00000150455	61	0	0	52	9	14.52	-	-	-	T	126162826	C	T	126162826	2	4	548	1	0	0	0	0	0	0	0	1	16022	718	25	4		4	TIRAP	11	126162826	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	23697408	126162826	8843690	159	47922										
FOXM1	0	genome.wustl.edu	37	chr12	2968543	2968543	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gggttggggacctaagcccaCtgtaggacttcttgggtctt	14	9	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	2968543	2968543	C	A	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	missense	c.1667	p.S556I	0.001	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	145	0	0	123	44	26.35	-	-	-	A	2968543	C	A	2968543	3	1	548	1	0	0	0	0	1	0	0	0	6066	565	20	4	742	4	FOXM1	12	2968543	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		2968543	130883352	160	47923										
TAS2R10	0	genome.wustl.edu	37	chr12	10978282	10978282	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtctccaaagggaaatgattAaaaaaatacatgtaattagg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	10978282	10978282	A	-	DEL	TAS2R10	ENST00000240619	human	ensembl	69_37n	-1	known	frame_shift_del	c.587	p.L196fs	0.009	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R10	HGNC	ENSG00000121318	63	0	0	32	11	24.44	-	-	-	-	10978282	A	-	10978282	7	5	548	1	0	1	0	1	0	0	0	0	15658	372	13	0	340	0	TAS2R10	12	10978282	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	8009739	10978282	122873613	161	47924										
SLCO1B1	0	genome.wustl.edu	37	chr12	21377736	21377736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccaccaacaactgtggcacaCgtgggtcatgtaggacatat	10	11	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	21377736	21377736	C	T	SNP	SLCO1B1	ENST00000256958	human	ensembl	69_37n	1	known	missense	c.1828	p.R610C	0.010	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	425	0	0	239	190	44.29	-	-	-	T	21377736	C	T	21377736	3	4	548	1	0	0	0	0	1	0	0	0	14812	536	19	1	1878	1	SLCO1B1	12	21377736	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	10399454	21377736	112474159	162	47925										
KCNH3	0	genome.wustl.edu	37	chr12	49934840	49934840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggccagacaccagtgagctcGtccgccaacagatccgcaag	11	15	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	49934840	49934840	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	missense	c.235	p.V79I	0.968	pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,pfscan_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	41	0	0	40	20	32.79	-	-	-	A	49934840	G	A	49934840	3	1	548	1	0	0	0	0	1	0	0	0	8087	1145	40	1	241	1	KCNH3	12	49934840	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	28557104	49934840	83917055	163	47926										
DIP2B	0	genome.wustl.edu	37	chr12	51092970	51092970	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttgggcttgctggtgtgacAaaaaatacatttgaggtaca							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	51092970	51092970	A	-	DEL	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	frame_shift_del	c.2310	p.N772fs	0.285	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	295	0	0	343	50	12.69	-	-	-	-	51092970	A	-	51092970	7	5	548	1	0	1	0	1	0	0	0	0	4564	117	5	0	2384	0	DIP2B	12	51092970	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	1158130	51092970	82758925	164	47927										
KRT75	0	genome.wustl.edu	37	chr12	52818365	52818365	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acttgacgctagaaccactgCcccctaagccccggttgctg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	52818365	52818365	C	-	DEL	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	frame_shift_del	c.1592	p.G531fs	0.993	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	133	0	0	127	51	28.65	-	-	-	-	52818365	C	-	52818365	7	5	548	1	0	1	0	1	0	0	0	0	8541	739	26	0	67	0	KRT75	12	52818365	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1725395	52818365	81033530	165	47928										
PCBP2	0	genome.wustl.edu	37	chr12	53848642	53848642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctctcaccatccggctacttAtgcatggaaaggtatgctct	8	12	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	53848642	53848642	A	G	SNP	PCBP2	ENST00000546463	human	ensembl	69_37n	1	known	missense	c.58	p.M20V	1.000	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP2	HGNC	ENSG00000197111	169	0	0	135	59	30.26	-	-	-	G	53848642	A	G	53848642	3	3	548	1	0	0	0	0	1	0	0	0	11574	449	16	5	60	5	PCBP2	12	53848642	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	1030277	53848642	80003253	166	47929										
SHMT2	0	genome.wustl.edu	37	chr12	57626239	57626239	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tttgtgtgtctgtccagcccAaaactggcctcattgactac							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	57626239	57626239	A	-	DEL	SHMT2	ENST00000328923	human	ensembl	69_37n	1	known	frame_shift_del	c.598	p.T201fs	0.008	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199	91	0	0	61	33	35.11	-	-	-	-	57626239	A	-	57626239	7	5	548	1	0	1	0	1	0	0	0	0	14375	131	5	0	620	0	SHMT2	12	57626239	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	3777597	57626239	76225656	167	47930										
LGR5	0	genome.wustl.edu	37	chr12	71974205	71974205	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggaatgtttcaggctcaaggTaggacttgctatgccatggt	13	7	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	71974205	71974205	T	C	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	splice_site	c.1552+2	e16+2	1.000	-	-	-	no_errors	LGR5	HGNC	ENSG00000139292	256	1	0.39	242	28	10.33	-	-	-	C	71974205	T	C	71974205	5	2	548	1	0	0	0	0	0	0	1	0	8812	1652	57	5	1616	5	LGR5	12	71974205	Splice_Site	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	14347966	71974205	61877690	168	47931										
ANKS1B	0	genome.wustl.edu	37	chr12	99640366	99640367	+	Frame_Shift_Ins	INS	-	-	T													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atggttttcgagttggttgcINStttttttgtgaaaaattgtt							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	99640366	99640367	-	T	INS	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2033_2032	p.S678fs	0.976:0.996	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	412	0	0	322	90	21.84	-	-	-	T	99640367	-	T	99640366	7	5	548	1	0	1	1	0	0	0	0	0	688	797	28	0	2057	0	ANKS1B	12	99640366	Frame_Shift_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	27666161	99640366	34211529	169	47932										
ATXN2	0	genome.wustl.edu	37	chr12	111990087	111990087	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggaaatcaaaacccacctcTttttgcataactggagtcca							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	111990087	111990087	T	-	DEL	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	frame_shift_del	c.1048	p.R350fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	281	0	0	314	37	10.51	-	-	-	-	111990087	T	-	111990087	7	5	548	1	0	1	0	1	0	0	0	0	1215	1617	56	0	2977	0	ATXN2	12	111990087	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	12349721	111990087	21861808	170	47933										
PIWIL1	0	genome.wustl.edu	37	chr12	130833950	130833950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aatttcaagaacaagtttccAaagaactaataggtttagtt	6	5	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	130833950	130833950	A	G	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.901	p.K301E	0.999	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	238	0	0	208	107	33.97	-	-	-	G	130833950	A	G	130833950	3	3	548	1	0	0	0	0	1	0	0	0	12031	131	5	5	927	5	PIWIL1	12	130833950	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	18843863	130833950	3017945	171	47934										
POLE	0	genome.wustl.edu	37	chr12	133220438	133220438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtcacctgagtctcatatacGccctcgatgtctggcgctga	10	13	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	12	133220438	133220438	G	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.4308	p.G1436	0.455	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	150	0	0	155	47	23.27	-	-	-	A	133220438	G	A	133220438	2	1	548	1	0	0	0	0	0	0	0	1	12270	1074	38	1		1	POLE	12	133220438	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	2386488	133220438	631457	172	47935										
ATP12A	0	genome.wustl.edu	37	chr13	25272825	25272825	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cacgagatggatgacccccaCggcaagcgcttcctcatggt	11	14	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	13	25272825	25272825	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	silent	c.1560	p.H520	0.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	56	0	0	56	13	18.84	-	-	-	T	25272825	C	T	25272825	2	4	548	1	0	0	0	0	0	0	0	1	1126	535	19	1		1	ATP12A	13	25272825	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		25272825	89897053	173	47936										
EDNRB	0	genome.wustl.edu	37	chr13	78477305	78477305	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atttacctgcatgaaagctgTcttctgaacgggatgaagca	10	8	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	13	78477305	78477305	T	C	SNP	EDNRB	ENST00000334286	human	ensembl	69_37n	-1	known	missense	c.787	p.T263A	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ETB_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ETB_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Bombsn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	EDNRB	HGNC	ENSG00000136160	210	1	0.47	64	41	39.05	-	-	-	C	78477305	T	C	78477305	3	2	548	1	0	0	0	0	1	0	0	0	4955	1667	58	5	682	5	EDNRB	13	78477305	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	53204480	78477305	36692573	174	47937										
RNF113B	0	genome.wustl.edu	37	chr13	98828674	98828674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcagctctcgcagaaataatGcctgcacttggtgacgactg	11	11	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	13	98828674	98828674	G	A	SNP	RNF113B	ENST00000267291	human	ensembl	69_37n	-1	known	missense	c.817	p.H273Y	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797	173	0	0	142	81	36.32	-	-	-	A	98828674	G	A	98828674	3	1	548	1	0	0	0	0	1	0	0	0	13514	1319	46	4	159	4	RNF113B	13	98828674	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	20351369	98828674	16341204	175	47938										
NALCN	0	genome.wustl.edu	37	chr13	101714459	101714459	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tccggatgtccacggaccggTatgaaagcatgctggtggga	15	9	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	13	101714459	101714459	T	C	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.4616	p.Y1539C	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	38	0	0	28	30	50.85	-	-	-	C	101714459	T	C	101714459	3	2	548	1	0	0	0	0	1	0	0	0	10220	1638	57	5	616	5	NALCN	13	101714459	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	2885785	101714459	13455419	176	47939										
IL25	0	genome.wustl.edu	37	chr14	23844943	23844943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	acatggacccccggggcaacTcggagctgctctaccacaac	10	16	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	23844943	23844943	T	C	SNP	IL25	ENST00000329715	human	ensembl	69_37n	1	known	missense	c.388	p.S130P	0.999	pfam_Interleukin-17	pfam_Interleukin-17	-	no_errors	IL25	HGNC	ENSG00000166090	54	0	0	69	13	15.85	-	-	-	C	23844943	T	C	23844943	3	2	548	1	0	0	0	0	1	0	0	0	7732	1551	54	5	407	5	IL25	14	23844943	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09		23844943	83504597	177	47940										
LRRC16B	0	genome.wustl.edu	37	chr14	24532703	24532703	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caaacacaagggaggccccgCccccccaggaccacacctcc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	24532703	24532703	C	-	DEL	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	frame_shift_del	c.2940	p.R983fs	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	47	0	0	37	14	26.92	-	-	-	-	24532703	C	-	24532703	7	5	548	1	0	1	0	1	0	0	0	0	9038	726	26	0	3062	0	LRRC16B	14	24532703	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	687760	24532703	82816837	178	47941										
MTHFD1	0	genome.wustl.edu	37	chr14	64891576	64891576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgatgtggcatacgacgaggCcaaagagagggcgagcttca	15	8	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	64891576	64891576	C	T	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.950	p.A317V	1.000	pfam_THF_DH/CycHdrlase_NAD-bd_dom,prints_THF_DH/CycHdrlase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	145	0	0	214	33	13.15	-	-	-	T	64891576	C	T	64891576	3	4	548	1	0	0	0	0	1	0	0	0	9999	739	26	4	816	4	MTHFD1	14	64891576	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	40358873	64891576	42457964	179	47942										
PCNX	0	genome.wustl.edu	37	chr14	71444749	71444749	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcaggcaggagacgcacaggAaaaaaacgggctagcagttt							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	71444749	71444749	A	-	DEL	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	frame_shift_del	c.1695	p.K567fs	0.950	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	103	0	0	71	37	33.94	-	-	-	-	71444749	A	-	71444749	7	5	548	1	0	1	0	1	0	0	0	0	11664	233	9	0	1717	0	PCNX	14	71444749	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09	6553173	71444749	35904791	180	47943										
NEK9	0	genome.wustl.edu	37	chr14	75577041	75577041	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	taccttggtctctttgtaggTgcattaagcagagtgacttt	10	7	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	75577041	75577041	T	C	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	silent	c.972	p.A324	0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	609	1	0.16	662	88	11.72	-	-	-	C	75577041	T	C	75577041	2	2	548	1	0	0	0	0	0	0	0	1	10403	1683	59	5		5	NEK9	14	75577041	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	4132292	75577041	31772499	181	47944										
CLMN	0	genome.wustl.edu	37	chr14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccacatgtttccttttttccTtttttttactactgattgat							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	14	95662949	95662949	T	-	DEL	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	frame_shift_del	c.2594	p.K865fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	354	0	0	383	152	27.49	-	-	-	-	95662949	T	-	95662949	7	5	548	1	0	1	0	1	0	0	0	0	3572	1609	56	0	430	0	CLMN	14	95662949	Frame_Shift_Del	DEL	T	TCGA-BH-A0HA-01A-11D-A12Q-09	20085908	95662949	11686591	182	47945										
THBS1	0	genome.wustl.edu	37	chr15	39885373	39885373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaccctaactgggttgtacgCcatcagggtaaagaactcgt	11	10	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	39885373	39885373	C	T	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	silent	c.2940	p.R980	0.977	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	39	0	0	42	25	37.31	-	-	-	T	39885373	C	T	39885373	2	4	548	1	0	0	0	0	0	0	0	1	15948	726	26	4		4	THBS1	15	39885373	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		39885373	62646019	183	47946										
MAPKBP1	0	genome.wustl.edu	37	chr15	42110267	42110267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaagggtcacagggtgaggaCggcacactcattaaggtaag	14	7	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	42110267	42110267	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	silent	c.1983	p.D661	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	68	0	0	83	36	30.25	-	-	-	T	42110267	C	T	42110267	2	4	548	1	0	0	0	0	0	0	0	1	9363	535	19	1		1	MAPKBP1	15	42110267	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	2224894	42110267	60421125	184	47947										
PPIP5K1	0	genome.wustl.edu	37	chr15	43831723	43831723	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggggaggtgaatgaagagtAcgtggtggagaaaatgggtt	19	1	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	43831723	43831723	A	G	SNP	PPIP5K1	ENST00000420765	human	ensembl	69_37n	-1	known	silent	c.3444	p.R1148	0.997	NULL	pfam_His_Pase_superF_clade-2,superfamily_MTCP1	-	no_errors	PPIP5K1	HGNC	ENSG00000168781	553	1	0.18	612	107	14.88	-	-	-	G	43831723	A	G	43831723	2	3	548	1	0	0	0	0	0	0	0	1	12409	378	14	5		5	PPIP5K1	15	43831723	Silent	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	1721456	43831723	58699669	185	47948										
SLC27A2	0	genome.wustl.edu	37	chr15	50526110	50526110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctccatcaaaatgaaagaaaAccatgaatttgatggaaaga	7	6	1	5			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	50526110	50526110	A	G	SNP	SLC27A2	ENST00000267842	human	ensembl	69_37n	1	known	missense	c.1601	p.N534S	0.067	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A2	HGNC	ENSG00000140284	280	0	0	306	38	11.05	-	-	-	G	50526110	A	G	50526110	3	3	548	1	0	0	0	0	1	0	0	0	14615	43	2	5	1635	5	SLC27A2	15	50526110	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	6694387	50526110	52005282	186	47949										
WDR72	0	genome.wustl.edu	37	chr15	54025194	54025194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tatcagtagctttcactaacCtttagttcatgtgagagatt	7	7	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	54025194	54025194	C	T	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	silent	c.153	p.K51	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	156	0	0	90	52	36.62	-	-	-	T	54025194	C	T	54025194	2	4	548	1	0	0	0	0	0	0	0	1	17419	695	24	4		4	WDR72	15	54025194	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3499084	54025194	48506198	187	47950										
SLC24A1	0	genome.wustl.edu	37	chr15	65918176	65918177	+	In_Frame_Ins	INS	-	-	CTG													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcattgcctggtgggagagcINSctgctgctgctgctggccta							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	65918176	65918177	-	CTG	INS	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	in_frame_ins	c.1758_1759	p.590in_frame_insL	1.000:1.000	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	304	0	0	331	70	17.46	-	-	-	CTG	65918177	-	CTG	65918176	7	5	548	1	0	1	1	0	0	0	0	0	14554	738	26	0		0	SLC24A1	15	65918176	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	11892982	65918176	36613216	188	47951										
RAB11A	0	genome.wustl.edu	37	chr15	66180167	66180167	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agccaaaggtgcagtgctgtCagaacatctaaggcatttct	10	9	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	66180167	66180167	C	T	SNP	RAB11A	ENST00000261890	human	ensembl	69_37n	1	known	nonsense	c.640	p.Q214*	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11A	HGNC	ENSG00000103769	166	0	0	142	36	20.22	-	-	-	T	66180167	C	T	66180167	4	4	548	1	0	0	0	0	0	1	0	0	12974	827	29	2	658	2	RAB11A	15	66180167	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	261991	66180167	36351225	189	47952										
TBC1D21	0	genome.wustl.edu	37	chr15	74177124	74177124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccttgcttccaacctagcaCgtgacattcagaaaatctat	5	13	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	74177124	74177124	C	T	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	missense	c.370	p.R124C	0.003	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	60	0	0	33	26	44.07	-	-	-	T	74177124	C	T	74177124	3	4	548	1	0	0	0	0	1	0	0	0	15702	536	19	1	388	1	TBC1D21	15	74177124	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	7996957	74177124	28354268	190	47953										
MAN2A2	0	genome.wustl.edu	37	chr15	91453858	91453858	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cattggggctcttccagcatCacgatgccatcactggcacg	10	14	3	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	91453858	91453858	C	A	SNP	MAN2A2	ENST00000558171	human	ensembl	69_37n	1	novel	nonsense	c.266	p.S89*	1.000	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_cen_dom,pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd,smart_Glyco_hydro_38_cen_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2A2	HGNC	ENSG00000196547	70	0	0	78	11	12.36	-	-	-	A	91453858	C	A	91453858	4	1	548	1	0	0	0	0	0	1	0	0	9286	826	29	2	1743	2	MAN2A2	15	91453858	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	17276734	91453858	11077534	191	47954										
TM2D3	0	genome.wustl.edu	37	chr15	102182699	102182699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagctaaatgtacaaagagcCatctgctggtccaacatagc	8	11	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	15	102182699	102182699	C	A	SNP	TM2D3	ENST00000333202	human	ensembl	69_37n	-1	known	missense	c.727	p.G243C	1.000	NULL	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277	89	0	0	67	45	40.18	-	-	-	A	102182699	C	A	102182699	3	1	548	1	0	0	0	0	1	0	0	0	16060	594	21	4	20	4	TM2D3	15	102182699	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	10728841	102182699	348693	192	47955										
STUB1	0	genome.wustl.edu	37	chr16	731505	731507	+	In_Frame_Del	DEL	GAA	GAA	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccagcgctcttcgaatcgcGaagaagaagcgctggaacag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	731505	731507	GAA	-	DEL	STUB1	ENST00000219548	human	ensembl	69_37n	1	known	in_frame_del	c.426_428	p.K145in_frame_del	1.000:1.000:1.000	NULL	pfam_Ubox_domain,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266	14	0	0	11	6	35.29	-	-	-	-	731507	GAA	-	731505	7	5	548	1	0	1	0	1	0	0	0	0	15426	1045	37	0	436	0	STUB1	16	731505	In_Frame_Del	DEL	GAA	TCGA-BH-A0HA-01A-11D-A12Q-09		731505	89623248	193	47956										
TRAF7	0	genome.wustl.edu	37	chr16	2220730	2220730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcccgaggaggaggaggagcCggtaggtgtgggggactcgg	23	7	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	2220730	2220730	C	T	SNP	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	missense	c.347	p.P116L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	26	0	0	23	14	37.84	-	-	-	T	2220730	C	T	2220730	3	4	548	1	0	0	0	0	1	0	0	0	16542	666	23	1	361	1	TRAF7	16	2220730	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1489225	2220730	88134023	194	47957										
FLYWCH1	0	genome.wustl.edu	37	chr16	2983745	2983745	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gagttcctgaagacgcccctGgggggcagcttcctggtgta							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	2983745	2983745	G	-	DEL	FLYWCH1	ENST00000399667	human	ensembl	69_37n	1	known	frame_shift_del	c.1278	p.G428fs	0.959	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	62	0	0	91	15	14.02	-	-	-	-	2983745	G	-	2983745	7	5	548	1	0	1	0	1	0	0	0	0	5993	1335	47	0	1289	0	FLYWCH1	16	2983745	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	763015	2983745	87371008	195	47958										
GRIN2A	0	genome.wustl.edu	37	chr16	9858202	9858202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttccctgtggcacgtggcccGatttgacgtttctgaaatgt	11	10	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	9858202	9858202	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.3199	p.R1067W	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	91	0	0	93	15	13.89	-	-	-	A	9858202	G	A	9858202	3	1	548	1	0	0	0	0	1	0	0	0	6830	1057	37	1	1199	1	GRIN2A	16	9858202	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	6874457	9858202	80496551	196	47959										
ABCC1	0	genome.wustl.edu	37	chr16	16218677	16218677	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgcggctggagtgtgtgggcAactgcatcgttctgtttgct	15	8	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	16218677	16218677	A	G	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.3652	p.N1218D	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	86	0	0	118	18	13.14	-	-	-	G	16218677	A	G	16218677	3	3	548	1	0	0	0	0	1	0	0	0	49	130	5	5	3720	5	ABCC1	16	16218677	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	6360475	16218677	74136076	197	47960										
SH2B1	0	genome.wustl.edu	37	chr16	28884850	28884850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagcctggggcagaagaggcGtcgagggcgccagaagtggc	19	10	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	28884850	28884850	G	A	SNP	SH2B1	ENST00000569651	human	ensembl	69_37n	1	putative	missense	c.457	p.V153I	0.991	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH2B1	HGNC	ENSG00000178188	109	0	0	93	35	27.34	-	-	-	A	28884850	G	A	28884850	3	1	548	1	0	0	0	0	1	0	0	0	14315	1132	40	1	2167	1	SH2B1	16	28884850	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	12666173	28884850	61469903	198	47961										
KIF22	0	genome.wustl.edu	37	chr16	29809769	29809769	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agtgcagcccatcctaaggcActtgctggaagggcagaatg	13	10	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	29809769	29809769	A	G	SNP	KIF22	ENST00000160827	human	ensembl	69_37n	1	known	missense	c.341	p.H114R	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	110	0	0	103	53	33.97	-	-	-	G	29809769	A	G	29809769	3	3	548	1	0	0	0	0	1	0	0	0	8342	159	6	5	351	5	KIF22	16	29809769	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	924919	29809769	60544984	199	47962										
ZNF785	0	genome.wustl.edu	37	chr16	30594700	30594700	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tccttgacagccacttcatgCgccacctctttttgttttgg	7	13	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	30594700	30594700	C	T	SNP	ZNF785	ENST00000395216	human	ensembl	69_37n	-1	known	silent	c.399	p.A133	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	52	0	0	37	30	44.78	-	-	-	T	30594700	C	T	30594700	2	4	548	1	0	0	0	0	0	0	0	1	18250	755	27	1		1	ZNF785	16	30594700	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	784931	30594700	59760053	200	47963										
PRSS8	0	genome.wustl.edu	37	chr16	31143790	31143790	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cctccacatagccagcacacAccatgtcctcttggacaaag	6	16	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	31143790	31143790	A	C	SNP	PRSS8	ENST00000317508	human	ensembl	69_37n	-1	known	missense	c.665	p.V222G	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS8	HGNC	ENSG00000052344	86	0	0	66	43	39.45	-	-	-	C	31143790	A	C	31143790	3	2	548	1	0	0	0	0	1	0	0	0	12715	159	6	5	374	5	PRSS8	16	31143790	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	549090	31143790	59210963	201	47964										
VPS4A	0	genome.wustl.edu	37	chr16	69358203	69358204	+	Frame_Shift_Del	DEL	AG	AG	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttctcagaggactttgggcaAgagagttaaaagctgcttca							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	16	69358203	69358204	AG	-	DEL	VPS4A	ENST00000254950	human	ensembl	69_37n	1	known	frame_shift_del	c.1305_1306	p.S437fs	1.000:1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4A	HGNC	ENSG00000132612	109	0	0	91	41	30.6	-	-	-	-	69358204	AG	-	69358203	7	5	548	1	0	1	0	1	0	0	0	0	17309	69	3	0	1347	0	VPS4A	16	69358203	Frame_Shift_Del	DEL	AG	TCGA-BH-A0HA-01A-11D-A12Q-09	38214413	69358203	20996550	202	47965										
SOX15	0	genome.wustl.edu	37	chr17	7491760	7491760	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgtatggagtgggagagccaGggggcaggtagtgggtatag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	7491760	7491760	G	-	DEL	SOX15	ENST00000250055	human	ensembl	69_37n	-1	known	frame_shift_del	c.638	p.P213fs	0.784	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX15	HGNC	ENSG00000129194	193	0	0	81	117	57.92	-	-	-	-	7491760	G	-	7491760	7	5	548	1	0	1	0	1	0	0	0	0	15035	1000	35	0	67	0	SOX15	17	7491760	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09		7491760	73703450	203	47966										
MAP2K4	0	genome.wustl.edu	37	chr17	12028690	12028690	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gagtttggggatcacattggTatgtttatgctgattcaacc	11	6	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	12028690	12028690	T	C	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site	c.924+2	e9+2	1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	311	1	0.32	118	152	56.3	-	-	-	C	12028690	T	C	12028690	5	2	548	1	0	0	0	0	0	0	1	0	9310	1652	57	5	923	5	MAP2K4	17	12028690	Splice_Site	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	4536930	12028690	69166520	204	47967										
FLII	0	genome.wustl.edu	37	chr17	18149770	18149770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctcctgctgctgcgtcatgcGtaccacctggggatgtggaa	13	12	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	18149770	18149770	G	A	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.3058	p.R1020C	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	118	0	0	39	58	59.79	-	-	-	A	18149770	G	A	18149770	3	1	548	1	0	0	0	0	1	0	0	0	5971	1145	40	1	779	1	FLII	17	18149770	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	6121080	18149770	63045440	205	47968										
SUPT6H	0	genome.wustl.edu	37	chr17	27027201	27027202	+	In_Frame_Ins	INS	-	-	AGC													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttcctgcaggcatcacccctINSagcagcagcagcaggacccg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	27027201	27027202	-	AGC	INS	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	in_frame_ins	c.4572_4573	p.1528in_frame_insS	1.000:1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	96	0	0	111	26	18.98	-	-	-	AGC	27027202	-	AGC	27027201	7	5	548	1	0	1	1	0	0	0	0	0	15491	1509	53	0	4702	0	SUPT6H	17	27027201	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	8877431	27027201	54168009	206	47969										
RHOT1	0	genome.wustl.edu	37	chr17	30521111	30521111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgacctggatttgacacctgAatatttgttccccctgtatg	8	10	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	30521111	30521111	A	G	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	missense	c.854	p.E285G	1.000	pfam_EF_hand_assoc_2,pirsf_Small_GTPase_Miro	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	697	1	0.14	606	320	34.56	-	-	-	G	30521111	A	G	30521111	3	3	548	1	0	0	0	0	1	0	0	0	13427	246	9	5	896	5	RHOT1	17	30521111	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	3493910	30521111	50674099	207	47970										
PIGW	0	genome.wustl.edu	37	chr17	34893944	34893944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atatgcataagaaccgatcaCatatcaaagacttgataaaa	5	7	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	34893944	34893944	C	G	SNP	PIGW	ENST00000328396	human	ensembl	69_37n	1	known	missense	c.994	p.H332D	0.000	pfam_GWT1,pirsf_GWT1	pfam_GWT1,pirsf_GWT1	-	no_errors	PIGW	HGNC	ENSG00000184886	177	0	0	171	84	32.94	-	-	-	G	34893944	C	G	34893944	3	3	548	1	0	0	0	0	1	0	0	0	11976	478	17	4	996	4	PIGW	17	34893944	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	4372833	34893944	46301266	208	47971										
NR1D1	0	genome.wustl.edu	37	chr17	38252334	38252334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtttggggatgcgcccaaaaCgcacagctgcaacaggatga	13	10	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	38252334	38252334	C	T	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	missense	c.611	p.R204H	1.000	prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	11	0	0	7	5	38.46	-	-	-	T	38252334	C	T	38252334	3	4	548	1	0	0	0	0	1	0	0	0	10688	536	19	1	1249	1	NR1D1	17	38252334	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3358390	38252334	42942876	209	47972										
TNS4	0	genome.wustl.edu	37	chr17	38643488	38643488	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ccatggagttggtgatggatGgggggcagctgctggcatgt							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	38643488	38643488	G	-	DEL	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	frame_shift_del	c.1088	p.P363fs	1.000	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	483	0	0	431	77	15.07	-	-	-	-	38643488	G	-	38643488	7	5	548	1	0	1	0	1	0	0	0	0	16440	1348	47	0	1099	0	TNS4	17	38643488	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	391154	38643488	42551722	210	47973										
QRICH2	0	genome.wustl.edu	37	chr17	74278024	74278024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttggagttgctcatagcgcCgcaccagcgtgctgacctga	12	13	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	74278024	74278024	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.3686	p.R1229Q	0.890	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	40	0	0	35	7	16.67	-	-	-	T	74278024	C	T	74278024	3	4	548	1	0	0	0	0	1	0	0	0	12963	652	23	1	1353	1	QRICH2	17	74278024	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	35634536	74278024	6917186	211	47974										
GPS1	0	genome.wustl.edu	37	chr17	80010320	80010320	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agcgccagcctgtcggcctgTacgctgctctacgaggtacc	12	15	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	80010320	80010320	T	C	SNP	GPS1	ENST00000578392	human	ensembl	69_37n	1	known	splice_site	c.220+2	e2+2	0.998	-	-	-	no_errors	GPS1	HGNC	ENSG00000169727	23	0	0	22	11	33.33	-	-	-	C	80010320	T	C	80010320	5	2	548	1	0	0	0	0	0	0	1	0	6783	1644	57	5	177	5	GPS1	17	80010320	Splice_Site	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	5732296	80010320	1184890	212	47975										
TBCD	0	genome.wustl.edu	37	chr17	80895232	80895232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agaagctcctgtcaggcatcGcagtgtgagtttcaagtgct	12	9	2	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	17	80895232	80895232	G	A	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.3277	p.A1093T	0.003	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	103	0	0	103	36	25.71	-	-	-	A	80895232	G	A	80895232	3	1	548	1	0	0	0	0	1	0	0	0	15728	1087	38	1	3415	1	TBCD	17	80895232	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	884912	80895232	299978	213	47976										
LAMA3	0	genome.wustl.edu	37	chr18	21419894	21419894	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tcaccttgaaggcaccgcagGtagtgtgctgtttctaaacc	10	11	2	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	21419894	21419894	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	splice_site	c.3336+1	e27+1	1.000	-	-	-	no_errors	LAMA3	HGNC	ENSG00000053747	126	0	0	73	65	47.1	-	-	-	T	21419894	G	T	21419894	5	4	548	1	0	0	0	0	0	0	1	0	8661	1275	44	4	3443	4	LAMA3	18	21419894	Splice_Site	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		21419894	56657354	214	47977										
OSBPL1A	0	genome.wustl.edu	37	chr18	21759703	21759703	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tgcaagtgaaaggcctcaccGcactaattcataagtctctc	7	12	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	21759703	21759703	G	A	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	nonsense	c.1909	p.R637*	0.999	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	178	0	0	138	92	40	-	-	-	A	21759703	G	A	21759703	4	1	548	1	0	0	0	0	0	1	0	0	11350	1101	38	1	979	1	OSBPL1A	18	21759703	Nonsense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	339809	21759703	56317545	215	47978										
MBD1	0	genome.wustl.edu	37	chr18	47803052	47803052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctcgacagtctttgcacaacGttttgagccgctgcctttgg	10	12	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	47803052	47803052	G	A	SNP	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	missense	c.533	p.T178M	0.989	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	117	0	0	75	37	33.04	-	-	-	A	47803052	G	A	47803052	3	1	548	1	0	0	0	0	1	0	0	0	9413	1145	40	1	1604	1	MBD1	18	47803052	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	26043349	47803052	30274196	216	47979										
CDH20	0	genome.wustl.edu	37	chr18	59157855	59157855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggcatgtccttgtacttctgGgggctgatggaccttacgac	13	10	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	59157855	59157855	G	T	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.69	p.W23C	0.994	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	141	0	0	117	37	24.03	-	-	-	T	59157855	G	T	59157855	3	4	548	1	0	0	0	0	1	0	0	0	3135	1241	43	4	71	4	CDH20	18	59157855	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	11354803	59157855	18919393	217	47980										
RTTN	0	genome.wustl.edu	37	chr18	67698148	67698148	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctgtgctcttctactgacagCcagcagtgacatcaatgcat	8	12	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	67698148	67698148	C	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.5611	p.A1871S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	272	0	0	207	99	32.35	-	-	-	A	67698148	C	A	67698148	3	1	548	1	0	0	0	0	1	0	0	0	13823	739	26	4	1105	4	RTTN	18	67698148	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	8540293	67698148	10379100	218	47981										
FBXO15	0	genome.wustl.edu	37	chr18	71807443	71807443	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cttctgctacttacccatccAggaacccagaacagcaggag	8	14	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	71807443	71807443	A	G	SNP	FBXO15	ENST00000419743	human	ensembl	69_37n	-1	known	missense	c.221	p.L74P	0.903	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO15	HGNC	ENSG00000141665	113	0	0	97	38	28.15	-	-	-	G	71807443	A	G	71807443	3	3	548	1	0	0	0	0	1	0	0	0	5774	188	7	5	1347	5	FBXO15	18	71807443	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	4109295	71807443	6269805	219	47982										
ADNP2	0	genome.wustl.edu	37	chr18	77895840	77895840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcaatcctggctgggatacaCtccaagtcactggtgcctgt	11	12	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	18	77895840	77895840	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	silent	c.2544	p.H848	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	34	0	0	27	11	28.21	-	-	-	T	77895840	C	T	77895840	2	4	548	1	0	0	0	0	0	0	0	1	324	564	20	4		4	ADNP2	18	77895840	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6088397	77895840	181408	220	47983										
PPAP2C	0	genome.wustl.edu	37	chr19	287568	287568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gctccagtcggggtcgcagaCggctaggaagttgggcctca	16	11	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	287568	287568	C	T	SNP	PPAP2C	ENST00000327790	human	ensembl	69_37n	-1	known	missense	c.451	p.V151I	0.992	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2C	HGNC	ENSG00000141934	37	0	0	44	6	12	-	-	-	T	287568	C	T	287568	3	4	548	1	0	0	0	0	1	0	0	0	12365	536	19	1	494	1	PPAP2C	19	287568	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		287568	58841415	221	47984										
SHD	0	genome.wustl.edu	37	chr19	4280122	4280122	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaggccccctccgcagccgcCcaccccggactacaccgaga	10	21	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	4280122	4280122	C	A	SNP	SHD	ENST00000543264	human	ensembl	69_37n	1	known	missense	c.62	p.P21H	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHD	HGNC	ENSG00000105251	30	0	0	16	11	40.74	-	-	-	A	4280122	C	A	4280122	3	1	548	1	0	0	0	0	1	0	0	0	14364	623	22	4	64	4	SHD	19	4280122	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3992554	4280122	54848861	222	47985										
HDGFRP2	0	genome.wustl.edu	37	chr19	4493798	4493799	+	In_Frame_Ins	INS	-	-	TCC													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cggcgtcctcctcctcctctINStcctcctcctcctccgactc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	4493798	4493799	-	TCC	INS	HDGFRP2	ENST00000301284	human	ensembl	69_37n	1	known	in_frame_ins	c.777_778	p.263in_frame_insS	0.004:0.060	NULL	pfam_LEDGF,pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	CTB-50L17.10	Clone_based_vega_gene	ENSG00000167674	17	0	0	10	3	23.08	-	-	-	TCC	4493799	-	TCC	4493798	7	5	548	1	0	1	1	0	0	0	0	0	7071	1596	56	0	803	0	HDGFRP2	19	4493798	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	213676	4493798	54635185	223	47986										
CDKN2D	0	genome.wustl.edu	37	chr19	10677827	10677827	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aagggtgtgagacccctggcGtccctgcgatggagatcaga	15	10	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	10677827	10677827	G	A	SNP	CDKN2D	ENST00000335766	human	ensembl	69_37n	-1	known	silent	c.408	p.D136	0.621	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355	35	0	0	33	20	37.74	-	-	-	A	10677827	G	A	10677827	2	1	548	1	0	0	0	0	0	0	0	1	3195	1136	40	1		1	CDKN2D	19	10677827	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	6184029	10677827	48451156	224	47987										
GTPBP3	0	genome.wustl.edu	37	chr19	17450401	17450401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggagggcgtgcggcgcgccCgggagaggtgggcggacagg	24	9	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	17450401	17450401	C	T	SNP	GTPBP3	ENST00000358792	human	ensembl	69_37n	1	known	missense	c.1063	p.R355W	0.959	pfam_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299	41	0	0	38	18	31.58	-	-	-	T	17450401	C	T	17450401	3	4	548	1	0	0	0	0	1	0	0	0	6932	643	23	1	1085	1	GTPBP3	19	17450401	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6772574	17450401	41678582	225	47988										
MEGF8	0	genome.wustl.edu	37	chr19	42841287	42841289	+	In_Frame_Del	DEL	TCT	TCT	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaagtgctacgaagatggcaTcttcttctaccaccttggct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	42841287	42841289	TCT	-	DEL	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	in_frame_del	c.1442_1444	p.F483in_frame_del	1.000:1.000:1.000	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	67	0	0	74	15	16.85	-	-	-	-	42841289	TCT	-	42841287	7	5	548	1	0	1	0	1	0	0	0	0	9534	1435	50	0	1472	0	MEGF8	19	42841287	In_Frame_Del	DEL	TCT	TCGA-BH-A0HA-01A-11D-A12Q-09	25390886	42841287	16287696	226	47989										
GRWD1	0	genome.wustl.edu	37	chr19	48953639	48953639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccaggtggaggtgtttgcgCtgcggcggcttctgcaggtg	19	9	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	48953639	48953639	C	T	SNP	GRWD1	ENST00000253237	human	ensembl	69_37n	1	known	silent	c.538	p.L180	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GRWD1	HGNC	ENSG00000105447	131	1	0.76	126	83	39.52	-	-	-	T	48953639	C	T	48953639	2	4	548	1	0	0	0	0	0	0	0	1	6862	796	28	4		4	GRWD1	19	48953639	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6112352	48953639	10175344	227	47990										
GYS1	0	genome.wustl.edu	37	chr19	49490492	49490492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagaaagccaaagaggacagCgtcgttggcctcgcggtcgt	14	11	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	49490492	49490492	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.451	p.A151T	1.000	pfam_Glycogen_synth,pfam_Starch_synth_cat_dom	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	72	0	0	52	39	42.39	-	-	-	T	49490492	C	T	49490492	3	4	548	1	0	0	0	0	1	0	0	0	6963	768	27	1	1818	1	GYS1	19	49490492	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	536853	49490492	9638491	228	47991										
RPS5	0	genome.wustl.edu	37	chr19	58904783	58904783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtggtccccgggaggactccAcacgcattgggcgcgccggg	17	14	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	19	58904783	58904783	A	G	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.376	p.T126A	0.992	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	41	0	0	37	6	13.64	-	-	-	G	58904783	A	G	58904783	3	3	548	1	0	0	0	0	1	0	0	0	13734	159	6	5	386	5	RPS5	19	58904783	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	9414291	58904783	224200	229	47992										
FLRT3	0	genome.wustl.edu	37	chr20	14307596	14307596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gtgatgaaatagtggatatgCgattatcatccaagcgtagt	11	5	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	14307596	14307596	C	T	SNP	FLRT3	ENST00000341420	human	ensembl	69_37n	-1	known	missense	c.557	p.R186H	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	134	0	0	51	17	25	-	-	-	T	14307596	C	T	14307596	3	4	548	1	0	0	0	0	1	0	0	0	5986	768	27	1	1396	1	FLRT3	20	14307596	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09		14307596	48717924	230	47993										
RIN2	0	genome.wustl.edu	37	chr20	19915793	19915793	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaactgaaacaggagatggtGcggacagatgtcaacctgga	14	7	1	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	19915793	19915793	G	A	SNP	RIN2	ENST00000255006	human	ensembl	69_37n	1	known	silent	c.255	p.V85	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	185	0	0	147	78	34.67	-	-	-	A	19915793	G	A	19915793	2	1	548	1	0	0	0	0	0	0	0	1	13458	1306	46	4		4	RIN2	20	19915793	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	5608197	19915793	43109727	231	47994										
NAA20	0	genome.wustl.edu	37	chr20	20003100	20003100	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atttctcttgtttctttcagTaacttggatccacttacaga	5	9	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	20003100	20003100	T	C	SNP	NAA20	ENST00000334982	human	ensembl	69_37n	1	known	silent	c.54	p.I18	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418	479	0	0	509	77	13.14	-	-	-	C	20003100	T	C	20003100	2	2	548	1	0	0	0	0	0	0	0	1	10192	1652	57	5		5	NAA20	20	20003100	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	87307	20003100	43022420	232	47995										
ADNP	0	genome.wustl.edu	37	chr20	49508350	49508350	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctctcagatggagaagcaccGtctttccactcaacaacatc	6	14	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	49508350	49508350	G	A	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	silent	c.2901	p.D967	0.780	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	131	0	0	126	26	17.11	-	-	-	A	49508350	G	A	49508350	2	1	548	1	0	0	0	0	0	0	0	1	323	1136	40	1		1	ADNP	20	49508350	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	29505250	49508350	13517170	233	47996										
SALL4	0	genome.wustl.edu	37	chr20	50400983	50400983	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggaaaccgggagggtaggaaCccccccactctggatcacag							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	50400983	50400983	C	-	DEL	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	frame_shift_del	c.2983	p.V995fs	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	112	0	0	90	51	35.92	-	-	-	-	50400983	C	-	50400983	7	5	548	1	0	1	0	1	0	0	0	0	13899	507	18	0	182	0	SALL4	20	50400983	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	892633	50400983	12624537	234	47997										
BIRC7	0	genome.wustl.edu	37	chr20	61869314	61869314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcctgcagagctggaagcgcGgggacgacccctggacggag	18	12	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	20	61869314	61869314	G	A	SNP	BIRC7	ENST00000217169	human	ensembl	69_37n	1	known	missense	c.409	p.G137R	0.969	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197	18	0	0	22	16	42.11	-	-	-	A	61869314	G	A	61869314	3	1	548	1	0	0	0	0	1	0	0	0	1444	1116	39	1	415	1	BIRC7	20	61869314	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	11468331	61869314	1156206	235	47998										
USP16	0	genome.wustl.edu	37	chr21	30411428	30411428	+	Frame_Shift_Del	DEL	A	A	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttaatgagatgcaagagaccAaaaagggggttgtgacaccg							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	21	30411428	30411428	A	-	DEL	USP16	ENST00000334352	human	ensembl	69_37n	1	known	frame_shift_del	c.814	p.K273fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP16	HGNC	ENSG00000156256	188	0	0	143	70	32.11	-	-	-	-	30411428	A	-	30411428	7	5	548	1	0	1	0	1	0	0	0	0	17144	131	5	0	840	0	USP16	21	30411428	Frame_Shift_Del	DEL	A	TCGA-BH-A0HA-01A-11D-A12Q-09		30411428	17718467	236	47999										
ITGB2	0	genome.wustl.edu	37	chr21	46310051	46310051	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agcagatgatggagttgttgTccttccggcagcttccttcc	11	11	0	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	21	46310051	46310051	T	C	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1499	p.D500G	1.000	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	39	0	0	26	16	38.1	-	-	-	C	46310051	T	C	46310051	3	2	548	1	0	0	0	0	1	0	0	0	7948	1667	58	5	830	5	ITGB2	21	46310051	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	15898623	46310051	1819844	237	48000										
POTEH	0	genome.wustl.edu	37	chr22	16287406	16287406	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tccatgaaagcgctgtcgtcGtagtctccccaagggcccac	10	15	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	16287406	16287406	G	A	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	silent	c.480	p.Y160	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	379	1	0.26	438	90	17.01	-	-	-	A	16287406	G	A	16287406	2	1	548	1	0	0	0	0	0	0	0	1	12341	1140	40	1		1	POTEH	22	16287406	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09		16287406	35017160	238	48001										
TOP3B	0	genome.wustl.edu	37	chr22	22326278	22326278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gatgttctccccctccttgtCgcagtccagccacagcacga	8	17	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	22326278	22326278	C	T	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	missense	c.355	p.D119N	1.000	pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,prints_Topo_IA	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	103	0	0	36	57	61.29	-	-	-	T	22326278	C	T	22326278	3	4	548	1	0	0	0	0	1	0	0	0	16464	884	31	1	2289	1	TOP3B	22	22326278	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6038872	22326278	28978288	239	48002										
GGT5	0	genome.wustl.edu	37	chr22	24621312	24621312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atggagggcaccatggaggaTggggaacgctcgcctggaac	17	9	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	24621312	24621312	T	C	SNP	GGT5	ENST00000425408	human	ensembl	69_37n	-1	putative	missense	c.212	p.H71R	0.042	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GGT5	HGNC	ENSG00000099998	55	0	0	17	22	55	-	-	-	C	24621312	T	C	24621312	3	2	548	1	0	0	0	0	1	0	0	0	6414	1451	51	5	368	5	GGT5	22	24621312	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	2295034	24621312	26683254	240	48003										
C1QTNF6	0	genome.wustl.edu	37	chr22	37578518	37578518	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gccacgcaggggagcagcaaActggccggtcgccatgtcaa	14	13	1	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	37578518	37578518	A	G	SNP	C1QTNF6	ENST00000337843	human	ensembl	69_37n	-1	known	missense	c.547	p.F183L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466	33	0	0	11	24	68.57	-	-	-	G	37578518	A	G	37578518	3	3	548	1	0	0	0	0	1	0	0	0	1986	43	2	5	293	5	C1QTNF6	22	37578518	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	12957206	37578518	13726048	241	48004										
CACNA1I	0	genome.wustl.edu	37	chr22	40043828	40043828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tattatctccacttttcagaTgggaagactaagggtcaggg	11	7	3	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	40043828	40043828	T	C	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	silent	c.1464	p.H488	0.019	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	67	0	0	31	41	56.94	-	-	-	C	40043828	T	C	40043828	2	2	548	1	0	0	0	0	0	0	0	1	2571	1478	51	5		5	CACNA1I	22	40043828	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	2465310	40043828	11260738	242	48005										
PLXNB2	0	genome.wustl.edu	37	chr22	50727190	50727190	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	accttgtcctgggtcatggcGtacaggctgcccaggtctcc	12	14	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	50727190	50727190	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	silent	c.1362	p.Y454	0.997	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	38	0	0	30	15	33.33	-	-	-	A	50727190	G	A	50727190	2	1	548	1	0	0	0	0	0	0	0	1	12198	1140	40	1		1	PLXNB2	22	50727190	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	10683362	50727190	577376	243	48006										
SBF1	0	genome.wustl.edu	37	chr22	50906253	50906253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctcccagaaggtcaagcaggCgcagtagtggcgctcggagt	15	11	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	22	50906253	50906253	C	T	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	missense	c.241	p.A81T	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	35	0	0	21	14	37.84	-	-	-	T	50906253	C	T	50906253	3	4	548	1	0	0	0	0	1	0	0	0	13945	768	27	1	5596	1	SBF1	22	50906253	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	179063	50906253	398313	244	48007										
CNKSR2	0	genome.wustl.edu	37	chrX	21627677	21627678	+	In_Frame_Ins	INS	-	-	GAG													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aacccccagaggtggaggaaINSgaggaggaggaggaggagga							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	21627677	21627678	-	GAG	INS	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	in_frame_ins	c.2634_2635	p.882in_frame_insE	0.989:0.997	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	18	0	0	12	4	25	-	-	-	GAG	21627678	-	GAG	21627677	7	5	548	1	0	1	1	0	0	0	0	0	3637	69	3	0	2712	0	CNKSR2	23	21627677	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09		21627677	133642883	245	48008										
ZNF645	0	genome.wustl.edu	37	chrX	22292144	22292144	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cactacgtgctccccagtctCaaaatggtaatccatctgca	6	14	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	22292144	22292144	C	T	SNP	ZNF645	ENST00000323684	human	ensembl	69_37n	1	known	nonsense	c.1036	p.Q346*	0.910	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809	230	0	0	244	45	15.46	-	-	-	T	22292144	C	T	22292144	4	4	548	1	0	0	0	0	0	1	0	0	18157	827	29	2	1038	2	ZNF645	23	22292144	Nonsense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	664467	22292144	132978416	246	48009										
POLA1	0	genome.wustl.edu	37	chrX	24830822	24830822	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aaactgcttgaaatagacatTgatggggttttcaagtctct	9	6	2	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	24830822	24830822	T	C	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	silent	c.3138	p.I1046	0.983	pfam_DNA-dir_DNA_pol_B_multi_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	242	1	0.41	221	82	26.97	-	-	-	C	24830822	T	C	24830822	2	2	548	1	0	0	0	0	0	0	0	1	12261	1800	63	5		5	POLA1	23	24830822	Silent	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	2538678	24830822	130439738	247	48010										
MAGEB4	0	genome.wustl.edu	37	chrX	30260720	30260720	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	atcttcaggaaagtctctcaGcgcacggagctggtctttgg	12	10	5	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	30260720	30260720	G	A	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	silent	c.468	p.Q156	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	79	0	0	83	28	25.23	-	-	-	A	30260720	G	A	30260720	2	1	548	1	0	0	0	0	0	0	0	1	9249	962	34	4		4	MAGEB4	23	30260720	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	5429898	30260720	125009840	248	48011										
FAM47A	0	genome.wustl.edu	37	chrX	34148695	34148695	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ttgggaggctccgagaattgAtgggactctggagctttggg	17	6	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	34148695	34148695	A	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1701	p.H567Q	0.003	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	274	0	0	306	67	17.91	-	-	-	T	34148695	A	T	34148695	3	4	548	1	0	0	0	0	1	0	0	0	5615	330	12	5	678	5	FAM47A	23	34148695	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	3887975	34148695	121121865	249	48012										
FAM47A	0	genome.wustl.edu	37	chrX	34150200	34150200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gcgacaaacgagagtatcttCgggagacggacagccgtagc	14	10	1	2			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	34150200	34150200	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.196	p.E66K	0.002	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	193	0	0	226	29	11.28	-	-	-	T	34150200	C	T	34150200	3	4	548	1	0	0	0	0	1	0	0	0	5615	893	31	1	2183	1	FAM47A	23	34150200	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1505	34150200	121120360	250	48013										
RPGR	0	genome.wustl.edu	37	chrX	38145271	38145272	+	In_Frame_Ins	INS	-	-	CCC													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctccccttcttcttccccttINScctcctcttccccctcccct							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	38145271	38145272	-	CCC	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_ins	c.2981_2980	p.994in_frame_insG	0.060:0.135	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	54	0	0	29	4	12.12	-	-	-	CCC	38145272	-	CCC	38145271	7	5	548	1	0	1	1	0	0	0	0	0	13634	1783	62	0	1040	0	RPGR	23	38145271	In_Frame_Ins	INS	-	TCGA-BH-A0HA-01A-11D-A12Q-09	3995071	38145271	117125289	251	48014										
KDM6A	0	genome.wustl.edu	37	chrX	44945128	44945128	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	aggtcatcaggaaaataacaActtctgttcagttaacataa	6	7	4	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	44945128	44945128	A	G	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.3473	p.N1158S	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	633	0	0	482	226	31.88	-	-	-	G	44945128	A	G	44945128	3	3	548	1	0	0	0	0	1	0	0	0	8190	43	2	5	3546	5	KDM6A	23	44945128	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	6799857	44945128	110325432	252	48015										
TFE3	0	genome.wustl.edu	37	chrX	48887952	48887952	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggggagcattctgggcaggtCccccccctacatggaacgtt							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	48887952	48887952	C	-	DEL	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	frame_shift_del	c.1445	p.G482fs	0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	56	0	0	45	9	16.36	-	-	-	-	48887952	C	-	48887952	7	5	548	1	0	1	0	1	0	0	0	0	15895	855	30	0	286	0	TFE3	23	48887952	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	3942824	48887952	106382608	253	48016										
TRO	0	genome.wustl.edu	37	chrX	54956207	54956207	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tggctctcctggcaccagtgTcagctttggcagtgcactca	11	13	3	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	54956207	54956207	T	C	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.3050	p.V1017A	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	74	0	0	68	9	11.69	-	-	-	C	54956207	T	C	54956207	3	2	548	1	0	0	0	0	1	0	0	0	16670	1667	58	5	3092	5	TRO	23	54956207	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	6068255	54956207	100314353	254	48017										
FAM123B	0	genome.wustl.edu	37	chrX	63411278	63411278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ctctacaacgaacctctcggGcctgggcttctcgggttctg	11	14	4	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	63411278	63411278	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.1889	p.A630V	0.001	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	38	0	0	36	25	40.98	-	-	-	A	63411278	G	A	63411278	3	1	548	1	0	0	0	0	1	0	0	0	5463	1203	42	4	1522	4	FAM123B	23	63411278	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	8455071	63411278	91859282	255	48018										
ZC4H2	0	genome.wustl.edu	37	chrX	64137672	64137672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tctccctttctttattcatcCtgcttccgtttcggcttttt	4	13	3	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	64137672	64137672	C	T	SNP	ZC4H2	ENST00000447788	human	ensembl	69_37n	-1	known	missense	c.503	p.R168K	0.508	NULL	pfam_Znf-C4H2	-	no_errors	ZC4H2	HGNC	ENSG00000126970	293	0	0	174	100	36.5	-	-	-	T	64137672	C	T	64137672	3	4	548	1	0	0	0	0	1	0	0	0	17674	681	24	4	31	4	ZC4H2	23	64137672	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	726394	64137672	91132888	256	48019										
PJA1	0	genome.wustl.edu	37	chrX	68382828	68382828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	caatattcaggttggttcccGaactctcgctgtcgtcccaa	8	13	2	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	68382828	68382828	G	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.254	p.S85L	0.009	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	240	0	0	225	117	33.91	-	-	-	A	68382828	G	A	68382828	3	1	548	1	0	0	0	0	1	0	0	0	12035	1059	37	1	1681	1	PJA1	23	68382828	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	4245156	68382828	86887732	257	48020										
NLGN3	0	genome.wustl.edu	37	chrX	70389300	70389300	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tggtgccccacctatacaacCtgcatgacatgttccactat	6	14	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	70389300	70389300	C	A	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.1900	p.L634M	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	111	0	0	89	51	36.43	-	-	-	A	70389300	C	A	70389300	3	1	548	1	0	0	0	0	1	0	0	0	10535	680	24	4	1926	4	NLGN3	23	70389300	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	2006472	70389300	84881260	258	48021										
ZMYM3	0	genome.wustl.edu	37	chrX	70472854	70472854	+	Frame_Shift_Del	DEL	C	C	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gagggggctttatagagcagCccccccagccccagcaactc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	70472854	70472854	C	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.252	p.L85fs	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	30	0	0	30	15	31.91	-	-	-	-	70472854	C	-	70472854	7	5	548	1	0	1	0	1	0	0	0	0	17797	726	26	0	3974	0	ZMYM3	23	70472854	Frame_Shift_Del	DEL	C	TCGA-BH-A0HA-01A-11D-A12Q-09	83554	70472854	84797706	259	48022										
ABCB7	0	genome.wustl.edu	37	chrX	74296459	74296459	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaggctgtctacagcatattTaaacatgaagggaaccacaa	9	8	1	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	74296459	74296459	T	C	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.487	p.K163E	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	168	0	0	80	42	34.43	-	-	-	C	74296459	T	C	74296459	3	2	548	1	0	0	0	0	1	0	0	0	46	1763	61	5	1822	5	ABCB7	23	74296459	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	3823605	74296459	80974101	260	48023										
SH3BGRL	0	genome.wustl.edu	37	chrX	80457737	80457737	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	tattgcatcttcctctggctCtacagcggtaaggagagtgg	12	9	3	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	80457737	80457737	C	T	SNP	SH3BGRL	ENST00000373212	human	ensembl	69_37n	1	known	missense	c.38	p.S13F	0.988	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171	249	0	0	222	96	30.19	-	-	-	T	80457737	C	T	80457737	3	4	548	1	0	0	0	0	1	0	0	0	14329	913	32	2	40	2	SH3BGRL	23	80457737	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	6161278	80457737	74812823	261	48024										
LUZP4	0	genome.wustl.edu	37	chrX	114536623	114536623	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	agaaaagaataaaagacagaAccatagtaaaaaggaatcgc	8	5	0	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	114536623	114536623	A	G	SNP	LUZP4	ENST00000371920	human	ensembl	69_37n	1	known	missense	c.158	p.N53S	0.000	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021	348	0	0	253	169	39.95	-	-	-	G	114536623	A	G	114536623	3	3	548	1	0	0	0	0	1	0	0	0	9154	43	2	5	164	5	LUZP4	23	114536623	Missense_Mutation	SNP	A	TCGA-BH-A0HA-01A-11D-A12Q-09	34078886	114536623	40733937	262	48025										
ODZ1	0	genome.wustl.edu	37	chrX	123657271	123657271	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	gaccctccaaatgatgtgagCggtgaaggaagcacaatagg	13	8	0	3			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	123657271	123657271	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.2976	p.P992	0.956	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	302	1	0.33	185	115	38.33	-	-	-	T	123657271	C	T	123657271	2	4	548	1	0	0	0	0	0	0	0	1	10907	755	27	1		1	ODZ1	23	123657271	Silent	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	9120648	123657271	31613289	263	48026										
GPR101	0	genome.wustl.edu	37	chrX	136113257	136113257	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggacaccacgctgagaatagTgtagctggggctggcccccc	14	13	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	136113257	136113257	T	C	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	missense	c.577	p.T193A	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	25	0	0	25	5	16.67	-	-	-	C	136113257	T	C	136113257	3	2	548	1	0	0	0	0	1	0	0	0	6672	1696	59	5	952	5	GPR101	23	136113257	Missense_Mutation	SNP	T	TCGA-BH-A0HA-01A-11D-A12Q-09	12455986	136113257	19157303	264	48027										
FMR1	0	genome.wustl.edu	37	chrX	147026442	147026442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cagaatctgaccacagagacGaactcagtgattggtcatta	9	9	3	4			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	147026442	147026442	G	A	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.1525	p.E509K	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	253	0	0	193	43	18.22	-	-	-	A	147026442	G	A	147026442	3	1	548	1	0	0	0	0	1	0	0	0	6006	1059	37	1	1583	1	FMR1	23	147026442	Missense_Mutation	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	10913185	147026442	8244118	265	48028										
IDS	0	genome.wustl.edu	37	chrX	148579795	148579795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	catccagcacatccacagggCaaagcaggttggcatggagt	12	11	0	0			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	148579795	148579795	C	T	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	missense	c.551	p.C184Y	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	76	0	0	68	32	31.68	-	-	-	T	148579795	C	T	148579795	3	4	548	1	0	0	0	0	1	0	0	0	7557	710	25	4	1151	4	IDS	23	148579795	Missense_Mutation	SNP	C	TCGA-BH-A0HA-01A-11D-A12Q-09	1553353	148579795	6690765	266	48029										
PRRG3	0	genome.wustl.edu	37	chrX	150869297	150869297	+	Frame_Shift_Del	DEL	G	G	-													0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	ggtggtgctggggcccagtcGggggggcaggaccacagtcc							TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	150869297	150869297	G	-	DEL	PRRG3	ENST00000370353	human	ensembl	69_37n	1	known	frame_shift_del	c.488	p.G165fs	0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	18	0	0	24	10	29.41	-	-	-	-	150869297	G	-	150869297	7	5	548	1	0	1	0	1	0	0	0	0	12687	1116	39	0	498	0	PRRG3	23	150869297	Frame_Shift_Del	DEL	G	TCGA-BH-A0HA-01A-11D-A12Q-09	2289502	150869297	4401263	267	48030										
GDI1	0	genome.wustl.edu	37	chrX	153667353	153667353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0374531835205993	10	1	0.705564179295556	5.97965641952984	0.51201950992916	0.226194642616772	0.83155060263902	0	cccttgtgcacccccacaggGcagctggtaaagatgctact	10	14	0	1			TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	95f2ee35-a485-4995-8205-01623d97da2d	eb1421a0-3424-4a55-be66-9bea2d867c12	X	153667353	153667353	G	A	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	1	known	silent	c.255	p.G85	0.978	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	77	0	0	80	20	20	-	-	-	A	153667353	G	A	153667353	2	1	548	1	0	0	0	0	0	0	0	1	6372	1217	42	4		4	GDI1	23	153667353	Silent	SNP	G	TCGA-BH-A0HA-01A-11D-A12Q-09	2798056	153667353	1603207	268	48031										
CLCNKB	0	genome.wustl.edu	37	chr1	16376146	16376146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	cctctacaagaccagtttccGggtggacgttcccttcgacc	9	15	1	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	16376146	16376146	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	69_37n	1	known	missense	c.815	p.R272Q	0.024	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908	65	0	0	33	12	26.67	-	-	-	A	16376146	G	A	16376146	3	1	549	1	0	0	0	0	1	0	0	0	3500	1116	39	1	993	1	CLCNKB	1	16376146	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		16376146	232874475	1	48032										
RCC1	0	genome.wustl.edu	37	chr1	28856409	28856410	+	Frame_Shift_Ins	INS	-	-	C													0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gcgcatagctaaaagaaggtINScccccccagcagatgccatc							TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	28856409	28856410	-	C	INS	RCC1	ENST00000373831	human	ensembl	69_37n	1	known	frame_shift_ins	c.31_32	p.A14fs	0.985:0.987	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198	33	0	0	20	3	13.04	-	-	-	C	28856410	-	C	28856409	7	5	549	1	0	1	1	0	0	0	0	0	13256	1667	58	0	33	0	RCC1	1	28856409	Frame_Shift_Ins	INS	-	TCGA-BH-A0HB-01A-11W-A071-09	12480263	28856409	220394212	2	48033										
MYCL1	0	genome.wustl.edu	37	chr1	40363231	40363231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tgggcacctggtccctcagcGccaagaatcgcgaacgcagg	13	14	1	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	40363231	40363231	G	A	SNP	MYCL1	ENST00000372816	human	ensembl	69_37n	-1	known	missense	c.908	p.A303V	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYCL1	HGNC	ENSG00000116990	112	0	0	50	22	30.56	-	-	-	A	40363231	G	A	40363231	3	1	549	1	0	0	0	0	1	0	0	0	10092	1087	38	1	190	1	MYCL1	1	40363231	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09	11506822	40363231	208887390	3	48034										
LEPR	0	genome.wustl.edu	37	chr1	66083718	66083718	+	Frame_Shift_Del	DEL	C	C	-													0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	ttgtttcctggatactatcaCccagtgattacaagctaatg							TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	66083718	66083718	C	-	DEL	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	frame_shift_del	c.2284	p.S763fs	0.367	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	196	0	0	146	42	21.88	-	-	-	-	66083718	C	-	66083718	7	5	549	1	0	1	0	1	0	0	0	0	8782	507	18	0	2338	0	LEPR	1	66083718	Frame_Shift_Del	DEL	C	TCGA-BH-A0HB-01A-11W-A071-09	25720487	66083718	183166903	4	48035										
PDE4DIP	0	genome.wustl.edu	37	chr1	144879284	144879284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agggtctttccagactagacGaataatcacttgtaactgag	9	8	2	3			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	144879284	144879284	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.4166	p.S1389L	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	333	0	0	244	55	18.33	-	-	-	A	144879284	G	A	144879284	3	1	549	1	0	0	0	0	1	0	0	0	11716	1059	37	1	2946	1	PDE4DIP	1	144879284	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09	78795566	144879284	104371337	5	48036										
ST6GAL2	0	genome.wustl.edu	37	chr2	107459975	107459975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tcccgtgggcctggctccccGggggaagggaatcccaatgt	15	13	0	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	107459975	107459975	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	69_37n	-1	known	silent	c.459	p.P153	0.000	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057	67	0	0	22	22	48.89	-	-	-	A	107459975	G	A	107459975	2	1	549	1	0	0	0	0	0	0	0	1	15313	1103	39	1		1	ST6GAL2	2	107459975	Silent	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		107459975	135739398	6	48037										
ACVR2A	0	genome.wustl.edu	37	chr2	148657378	148657378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tgctctattccttggtgccaCttatgttaattgcggggatt	10	8	1	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	148657378	148657378	C	G	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.439	p.L147V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	645	0	0	447	182	28.93	-	-	-	G	148657378	C	G	148657378	3	3	549	1	0	0	0	0	1	0	0	0	223	565	20	4	453	4	ACVR2A	2	148657378	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	41197403	148657378	94541995	7	48038										
SPHKAP	0	genome.wustl.edu	37	chr2	228996728	228996728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tgtgatggagttccccgggcCgcttcctgagctgccacagc	13	14	0	2			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	228996728	228996728	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.106	p.G36S	0.129	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	120	0	0	79	23	22.55	-	-	-	T	228996728	C	T	228996728	3	4	549	1	0	0	0	0	1	0	0	0	15139	652	23	1	5040	1	SPHKAP	2	228996728	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	80339350	228996728	14202645	8	48039										
LDB2	0	genome.wustl.edu	37	chr4	16504398	16504398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tcgtcgtccatgccgttggcCgcatcatattgcgtgttttc	10	12	1	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	16504398	16504398	C	T	SNP	LDB2	ENST00000507464	human	ensembl	69_37n	-1	novel	missense	c.752	p.R251Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LDB2	HGNC	ENSG00000169744	240	0	0	200	44	17.96	-	-	-	T	16504398	C	T	16504398	3	4	549	1	0	0	0	0	1	0	0	0	8750	639	23	1	135	1	LDB2	4	16504398	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		16504398	174649878	9	48040										
CDS1	0	genome.wustl.edu	37	chr4	85540676	85540676	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agatttatatcatttgccctCtatctggcaggtaagttaag	8	7	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	85540676	85540676	C	T	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	1	known	silent	c.570	p.L190	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	145	0	0	111	55	33.13	-	-	-	T	85540676	C	T	85540676	2	4	549	1	0	0	0	0	0	0	0	1	3206	900	32	2		2	CDS1	4	85540676	Silent	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	69036278	85540676	105613600	10	48041										
ARHGAP24	0	genome.wustl.edu	37	chr4	86898785	86898785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gagtgtgcagaacttggcaaCggtctttggtcctaatatcc	11	9	1	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	86898785	86898785	C	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	missense	c.869	p.T290M	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	127	0	0	97	42	30.22	-	-	-	T	86898785	C	T	86898785	3	4	549	1	0	0	0	0	1	0	0	0	875	536	19	1	1011	1	ARHGAP24	4	86898785	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	1358109	86898785	104255491	11	48042										
NR3C2	0	genome.wustl.edu	37	chr4	149357669	149357669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gctgctcataggaatagtcaGcatctcttacagaatccata	7	10	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	149357669	149357669	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	296	0	0	207	80	27.87	-	-	-	A	149357669	G	A	149357669	3	1	549	1	0	0	0	0	1	0	0	0	10704	971	34	4	2642	4	NR3C2	4	149357669	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09	62458884	149357669	41796607	12	48043										
LRBA	0	genome.wustl.edu	37	chr4	151412073	151412073	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tttctgtaacacattacctcTgtttgccataaagatctcca	4	11	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	151412073	151412073	T	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	nonsense	c.6478	p.R2160*	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	140	0	0	105	51	32.69	-	-	-	A	151412073	T	A	151412073	4	1	549	1	0	0	0	0	0	1	0	0	8997	1588	55	5	2181	5	LRBA	4	151412073	Nonsense_Mutation	SNP	T	TCGA-BH-A0HB-01A-11W-A071-09	2054404	151412073	39742203	13	48044										
CCNJL	0	genome.wustl.edu	37	chr5	159686723	159686723	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	ttctggctgctcaggatcctCgtgctgtttatttgctccaa	9	11	2	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	5	159686723	159686723	C	T	SNP	CCNJL	ENST00000393977	human	ensembl	69_37n	-1	known	silent	c.480	p.T160	0.578	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_C,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083	72	0	0	77	27	25.47	-	-	-	T	159686723	C	T	159686723	2	4	549	1	0	0	0	0	0	0	0	1	2958	871	31	1		1	CCNJL	5	159686723	Silent	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		159686723	21228537	14	48045										
TRIM73	0	genome.wustl.edu	37	chr7	75028599	75028599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	cggtcacgcccgtctccaccGtctgcagccgcatgaaggtg	12	16	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	7	75028599	75028599	G	A	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	11	0	0	2	5	71.43	-	-	-	A	75028599	G	A	75028599	3	1	549	1	0	0	0	0	1	0	0	0	16642	1145	40	1	384	1	TRIM73	7	75028599	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		75028599	84110064	15	48046										
IFNA14	0	genome.wustl.edu	37	chr9	21239924	21239924	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gggccatcattaaagcaaagGgcaatgccattgggaatccc	11	10	1	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	9	21239924	21239924	G	A	SNP	IFNA14	ENST00000380222	human	ensembl	69_37n	-1	known	missense	c.11	p.P4L	0.000	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA14	HGNC	ENSG00000228083	182	0	0	116	56	32.56	-	-	-	A	21239924	G	A	21239924	3	1	549	1	0	0	0	0	1	0	0	0	7588	1232	43	4	562	4	IFNA14	9	21239924	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		21239924	119973507	16	48047										
TAF1L	0	genome.wustl.edu	37	chr9	32634836	32634836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tcgaaattctggaaaaagttCggtgacacttggcaacagct	10	8	1	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	9	32634836	32634836	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.742	p.E248K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	178	0	0	118	53	30.81	-	-	-	T	32634836	C	T	32634836	3	4	549	1	0	0	0	0	1	0	0	0	15615	893	31	1	4742	1	TAF1L	9	32634836	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	11394912	32634836	108578595	17	48048										
FBXO18	0	genome.wustl.edu	37	chr10	5963220	5963220	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	cctctgtcttgttgttttcaGagttttcggtttggtgtgga	12	6	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	10	5963220	5963220	G	T	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	splice_site	c.2254-1	e15-1	1.000	-	-	-	no_errors	FBXO18	HGNC	ENSG00000134452	105	0	0	48	30	38.46	-	-	-	T	5963220	G	T	5963220	5	4	549	1	0	0	0	0	0	0	1	0	5777	956	33	2	2316	2	FBXO18	10	5963220	Splice_Site	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		5963220	129571527	18	48049										
MMP13	0	genome.wustl.edu	37	chr11	102826428	102826428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gaaggcagccaggacccctgGatgcatcttgaatggtgatg	14	9	1	2			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	11	102826428	102826428	G	T	SNP	MMP13	ENST00000340273	human	ensembl	69_37n	-1	novel	missense	c.7	p.P3T	0.000	pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP13	HGNC	ENSG00000137745	127	1	0.78	54	41	42.71	-	-	-	T	102826428	G	T	102826428	3	4	549	1	0	0	0	0	1	0	0	0	9723	1174	41	2	1448	2	MMP13	11	102826428	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		102826428	32180088	19	48050										
APOA4	0	genome.wustl.edu	37	chr11	116692402	116692402	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agctctcgcaggttgtccccGatcttctggctcacctcatt	8	15	5	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	11	116692402	116692402	G	A	SNP	APOA4	ENST00000357780	human	ensembl	69_37n	-1	known	silent	c.372	p.I124	0.114	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244	55	0	0	13	14	51.85	-	-	-	A	116692402	G	A	116692402	2	1	549	1	0	0	0	0	0	0	0	1	785	1048	37	1		1	APOA4	11	116692402	Silent	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09	13865974	116692402	18314114	20	48051										
LRIG3	0	genome.wustl.edu	37	chr12	59271349	59271349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	ctgtcatctgaggggagtcgCaggttggagtggggatcaca	17	7	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	12	59271349	59271349	C	T	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.2369	p.C790Y	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	94	0	0	67	14	17.28	-	-	-	T	59271349	C	T	59271349	3	4	549	1	0	0	0	0	1	0	0	0	9012	710	25	4	1010	4	LRIG3	12	59271349	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		59271349	74580546	21	48052										
NUPL1	0	genome.wustl.edu	37	chr13	25905699	25905699	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agcaacagcctgctacaggtCtgaacgcattcaagttatag	9	10	2	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	13	25905699	25905699	C	T	SNP	NUPL1	ENST00000463407	human	ensembl	69_37n	1	known	silent	c.1438	p.L480	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	66	0	0	29	22	43.14	-	-	-	T	25905699	C	T	25905699	2	4	549	1	0	0	0	0	0	0	0	1	10847	928	32	2		2	NUPL1	13	25905699	Silent	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		25905699	89264179	22	48053										
FEM1B	0	genome.wustl.edu	37	chr15	68582349	68582349	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tgctatagtagtgaatggccAtgggatgacgccattgaaag	13	6	0	3			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	15	68582349	68582349	A	T	SNP	FEM1B	ENST00000306917	human	ensembl	69_37n	1	known	missense	c.653	p.H218L	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	FEM1B	HGNC	ENSG00000169018	181	0	0	113	46	28.75	-	-	-	T	68582349	A	T	68582349	3	4	549	1	0	0	0	0	1	0	0	0	5856	217	8	5	659	5	FEM1B	15	68582349	Missense_Mutation	SNP	A	TCGA-BH-A0HB-01A-11W-A071-09		68582349	33949043	23	48054										
LRRK1	0	genome.wustl.edu	37	chr15	101593282	101593283	+	Frame_Shift_Ins	INS	-	-	T													0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	aaattcaagaactttgctaaINScgtaccggcaggtaagcggg							TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	15	101593282	101593283	-	T	INS	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	frame_shift_ins	c.3845_3846	p.V1283fs	0.007:0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	16	0	0	9	13	59.09	-	-	-	T	101593283	-	T	101593282	7	5	549	1	0	1	1	0	0	0	0	0	9098	43	2	0	3939	0	LRRK1	15	101593282	Frame_Shift_Ins	INS	-	TCGA-BH-A0HB-01A-11W-A071-09	33010933	101593282	938110	24	48055										
PRKCB	0	genome.wustl.edu	37	chr16	24192242	24192242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	tggcactccagactacatcgCccccgaggtgagagctgctg	12	14	0	2			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	16	24192242	24192242	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.1526	p.A509V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	93	0	0	55	24	30.38	-	-	-	T	24192242	C	T	24192242	3	4	549	1	0	0	0	0	1	0	0	0	12589	739	26	4	1576	4	PRKCB	16	24192242	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		24192242	66162511	25	48056										
EFCAB5	0	genome.wustl.edu	37	chr17	28381157	28381157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	caaccttaagcagaaaagatCactttccaggtagtaatgca	7	9	1	2			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	28381157	28381157	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.2185	p.H729Y	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	62	0	0	63	15	19.23	-	-	-	T	28381157	C	T	28381157	3	4	549	1	0	0	0	0	1	0	0	0	4973	826	29	2	2223	2	EFCAB5	17	28381157	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		28381157	52814053	26	48057										
CDK12	0	genome.wustl.edu	37	chr17	37618384	37618385	+	Frame_Shift_Del	DEL	TT	TT	-													0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agtggaggagcttctggaacTttgcagccgtcatcgggagg							TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	37618384	37618385	TT	-	DEL	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	frame_shift_del	c.60_61	p.L21fs	0.997:0.974	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	53	0	0	20	16	44.44	-	-	-	-	37618385	TT	-	37618384	7	5	549	1	0	1	0	1	0	0	0	0	3157	1596	56	0	62	0	CDK12	17	37618384	Frame_Shift_Del	DEL	TT	TCGA-BH-A0HB-01A-11W-A071-09	9237227	37618384	43576826	27	48058										
VEZF1	0	genome.wustl.edu	37	chr17	56060288	56060288	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	ggttcttcttgacaggcttaCtgggtttcttgacagactgg	12	8	3	3			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	56060288	56060288	C	G	SNP	VEZF1	ENST00000581208	human	ensembl	69_37n	-1	known	missense	c.500	p.S167T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451	84	0	0	26	40	60.61	-	-	-	G	56060288	C	G	56060288	3	3	549	1	0	0	0	0	1	0	0	0	17252	565	20	4	1085	4	VEZF1	17	56060288	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09	18441904	56060288	25134922	28	48059										
METRNL	0	genome.wustl.edu	37	chr17	81052054	81052054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	agcctgagcggcaggactcaGccatccacctgcgcgtgagc	13	15	1	2			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	81052054	81052054	G	A	SNP	METRNL	ENST00000320095	human	ensembl	69_37n	1	known	missense	c.670	p.A224T	0.436	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845	14	0	0	7	5	41.67	-	-	-	A	81052054	G	A	81052054	3	1	549	1	0	0	0	0	1	0	0	0	9560	971	34	4	684	4	METRNL	17	81052054	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09	24991766	81052054	143156	29	48060										
LRRC30	0	genome.wustl.edu	37	chr18	7231362	7231362	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	gcttgtccgaggtccagaaaCtcaatctgtctcacaaccag	8	13	3	1			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	18	7231362	7231362	C	G	SNP	LRRC30	ENST00000383467	human	ensembl	69_37n	1	known	missense	c.226	p.L76V	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422	70	0	0	255	38	12.97	-	-	-	G	7231362	C	G	7231362	3	3	549	1	0	0	0	0	1	0	0	0	9051	565	20	4	228	4	LRRC30	18	7231362	Missense_Mutation	SNP	C	TCGA-BH-A0HB-01A-11W-A071-09		7231362	70845886	30	48061										
CHEK2	0	genome.wustl.edu	37	chr22	29092948	29092948	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0967741935483871	3	0.904872247913239	0.939460649422124	0	1.08037974683544	0.142857142857143	0.62934362934363	0	attctctggctttaagtcacGgtgtataataccgttttcat	7	8	3	0			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	22	29092948	29092948	G	A	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.1165	p.R389C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	46	0	0	22	27	55.1	-	-	-	A	29092948	G	A	29092948	3	1	549	1	0	0	0	0	1	0	0	0	3364	1116	39	1	619	1	CHEK2	22	29092948	Missense_Mutation	SNP	G	TCGA-BH-A0HB-01A-11W-A071-09		29092948	22211618	31	48062										
PANK4	0	genome.wustl.edu	37	chr1	2452260	2452260	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcagggtcggaatccttctGgtacacgaaggcctcatggg	13	11	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	2452260	2452260	G	A	SNP	PANK4	ENST00000378466	human	ensembl	69_37n	-1	known	nonsense	c.508	p.Q170*	1.000	pfam_Type_II_PanK,pirsf_PanK_long,tigrfam_Type_II_PanK	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	14	0	0	12	12	50	-	-	-	A	2452260	G	A	2452260	4	1	550	1	0	0	0	0	0	1	0	0	11492	1357	47	4	1877	4	PANK4	1	2452260	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		2452260	246798361	1	48063										
PANK4	0	genome.wustl.edu	37	chr1	2452612	2452612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cggtcgcctggatgaccttgGtctctgtgttgacgagatgg	15	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	2452612	2452612	G	A	SNP	PANK4	ENST00000378466	human	ensembl	69_37n	-1	known	missense	c.350	p.T117I	1.000	pfam_Type_II_PanK,pirsf_PanK_long,tigrfam_Type_II_PanK	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	21	0	0	25	7	21.88	-	-	-	A	2452612	G	A	2452612	3	1	550	1	0	0	0	0	1	0	0	0	11492	1261	44	4	2039	4	PANK4	1	2452612	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	352	2452612	246798009	2	48064										
DFFA	0	genome.wustl.edu	37	chr1	10532481	10532481	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttagagtccggatctcgccaGattctggtaccccggcgtcc	11	14	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	10532481	10532481	G	A	SNP	DFFA	ENST00000377038	human	ensembl	69_37n	-1	known	missense	c.35	p.S12F	0.015	pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_C,pfam_CAD,smart_CAD,pirsf_DNA_fragmentation_factor_asu,pfscan_CAD	-	no_errors	DFFA	HGNC	ENSG00000160049	15	0	0	23	19	45.24	-	-	-	A	10532481	G	A	10532481	3	1	550	1	0	0	0	0	1	0	0	0	4488	942	33	2	1008	2	DFFA	1	10532481	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8079869	10532481	238718140	3	48065										
MTHFR	0	genome.wustl.edu	37	chr1	11856367	11856367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcaaagaaaagctgcgtgaTgatgaaatcggctcccgcag	11	10	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	11856367	11856367	T	C	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.799	p.I267V	1.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	97	0	0	62	49	44.14	-	-	-	C	11856367	T	C	11856367	3	2	550	1	0	0	0	0	1	0	0	0	10003	1464	51	5	1326	5	MTHFR	1	11856367	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1323886	11856367	237394254	4	48066										
TNFRSF1B	0	genome.wustl.edu	37	chr1	12253011	12253011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtatggccccaggggcagtaCacttaccccagccagtgtcc	11	15	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	12253011	12253011	C	T	SNP	TNFRSF1B	ENST00000376259	human	ensembl	69_37n	1	known	missense	c.643	p.H215Y	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1B	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137	47	0	0	28	7	20	-	-	-	T	12253011	C	T	12253011	3	4	550	1	0	0	0	0	1	0	0	0	16389	478	17	4	665	4	TNFRSF1B	1	12253011	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	396644	12253011	236997610	5	48067										
VPS13D	0	genome.wustl.edu	37	chr1	12428566	12428566	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctacgagtggaaattactCtccgaggagctacgtatagg	11	9	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	12428566	12428566	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.10492	p.L3498F	1.000	pfam_VPSAP	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	208	0	0	145	41	22.04	-	-	-	T	12428566	C	T	12428566	3	4	550	1	0	0	0	0	1	0	0	0	17289	913	32	2	10698	2	VPS13D	1	12428566	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	175555	12428566	236822055	6	48068										
PRDM2	0	genome.wustl.edu	37	chr1	14106589	14106589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagcagcatggaccgatgccGggctgacttccaaaaaatcc	10	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	14106589	14106589	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.2299	p.G767R	0.001	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	162	0	0	274	41	12.97	-	-	-	A	14106589	G	A	14106589	3	1	550	1	0	0	0	0	1	0	0	0	12539	1116	39	1	2325	1	PRDM2	1	14106589	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1678023	14106589	235144032	7	48069										
CASP9	0	genome.wustl.edu	37	chr1	15832528	15832528	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccaccacgcagcagtccagaGcaccgtggtcctgctgcgcc	11	18	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	15832528	15832528	G	A	SNP	CASP9	ENST00000333868	human	ensembl	69_37n	-1	known	missense	c.677	p.A226V	0.001	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP9	HGNC	ENSG00000132906	61	0	0	45	5	10	-	-	-	A	15832528	G	A	15832528	3	1	550	1	0	0	0	0	1	0	0	0	2704	971	34	4	593	4	CASP9	1	15832528	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1725939	15832528	233418093	8	48070										
SPEN	0	genome.wustl.edu	37	chr1	16256400	16256400	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaagatgtcactgatgactCtcctcctagcaaaaagaaaa	6	10	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	16256400	16256400	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.3665	p.S1222F	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	212	0	0	164	28	14.58	-	-	-	T	16256400	C	T	16256400	3	4	550	1	0	0	0	0	1	0	0	0	15129	913	32	2	3707	2	SPEN	1	16256400	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	423872	16256400	232994221	9	48071										
SPEN	0	genome.wustl.edu	37	chr1	16259295	16259295	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctcgctgaggcctctgcctCtgctgcctataaggcagatg	12	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	16259295	16259295	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.6560	p.S2187F	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	151	0	0	189	38	16.74	-	-	-	T	16259295	C	T	16259295	3	4	550	1	0	0	0	0	1	0	0	0	15129	913	32	2	6602	2	SPEN	1	16259295	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2895	16259295	232991326	10	48072										
CLCNKA	0	genome.wustl.edu	37	chr1	16356296	16356296	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catgcccatctttatccttgGtgagtctggggtcctgaggt	12	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	16356296	16356296	G	A	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	splice_site	c.1297+1	e12+1	1.000	-	-	-	no_errors	CLCNKA	HGNC	ENSG00000186510	35	0	0	21	7	25	-	-	-	A	16356296	G	A	16356296	5	1	550	1	0	0	0	0	0	0	1	0	3499	1275	44	4	1344	4	CLCNKA	1	16356296	Splice_Site	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	97001	16356296	232894325	11	48073										
ATP13A2	0	genome.wustl.edu	37	chr1	17314651	17314651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accgtgtagaggatcaggacGgagatgaactgggtcaggct	16	7	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	17314651	17314651	G	A	SNP	ATP13A2	ENST00000326735	human	ensembl	69_37n	-1	known	silent	c.2841	p.S947	0.018	tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A2	HGNC	ENSG00000159363	40	0	0	41	10	19.61	-	-	-	A	17314651	G	A	17314651	2	1	550	1	0	0	0	0	0	0	0	1	1128	1103	39	1		1	ATP13A2	1	17314651	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	958355	17314651	231935970	12	48074										
PADI3	0	genome.wustl.edu	37	chr1	17607238	17607238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtgtgacatcattgacatcCcacagctcttcaagaccgag	8	12	3	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	17607238	17607238	C	T	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	missense	c.1708	p.P570S	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	107	0	0	99	79	44.13	-	-	-	T	17607238	C	T	17607238	3	4	550	1	0	0	0	0	1	0	0	0	11452	623	22	4	1766	4	PADI3	1	17607238	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	292587	17607238	231643383	13	48075										
RCC2	0	genome.wustl.edu	37	chr1	17743035	17743035	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtttggtacaggcagaatctGtccatctttcgtcttctcaa	8	10	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	17743035	17743035	G	A	SNP	RCC2	ENST00000375433	human	ensembl	69_37n	-1	known	nonsense	c.967	p.Q323*	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051	54	0	0	36	8	18.18	-	-	-	A	17743035	G	A	17743035	4	1	550	1	0	0	0	0	0	1	0	0	13257	1386	48	4	625	4	RCC2	1	17743035	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	135797	17743035	231507586	14	48076										
UBR4	0	genome.wustl.edu	37	chr1	19443822	19443822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgattttcactgtcactttGctgatggtgtgactgccaat	9	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	19443822	19443822	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.10716	p.S3572	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	155	0	0	77	15	16.3	-	-	-	A	19443822	G	A	19443822	2	1	550	1	0	0	0	0	0	0	0	1	17001	1310	46	4		4	UBR4	1	19443822	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1700787	19443822	229806799	15	48077										
UBR4	0	genome.wustl.edu	37	chr1	19483404	19483404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgcttcaggagtgcagagaGctgcagaacggtgatctgca	14	8	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	19483404	19483404	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.5776	p.L1926F	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	141	0	0	107	24	18.32	-	-	-	A	19483404	G	A	19483404	3	1	550	1	0	0	0	0	1	0	0	0	17001	971	34	4	10039	4	UBR4	1	19483404	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	39582	19483404	229767217	16	48078										
UBR4	0	genome.wustl.edu	37	chr1	19499380	19499380	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtgaacgatgcataggtgtCaatgagttgcagcgtggctg	16	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	19499380	19499380	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.3499	p.D1167N	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	156	0	0	105	24	18.46	-	-	-	T	19499380	C	T	19499380	3	4	550	1	0	0	0	0	1	0	0	0	17001	826	29	2	12380	2	UBR4	1	19499380	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	15976	19499380	229751241	17	48079										
UBR4	0	genome.wustl.edu	37	chr1	19524307	19524308	+	Splice_Site	DEL	TA	TA	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtagcttctccgagccaccTaaatgaatgaaaaccacaac							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	19524307	19524308	TA	-	DEL	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	splice_site_del	c.752-3_752-2	e7-2	1.000:0.633	-	-	-	no_errors	UBR4	HGNC	ENSG00000127481	203	0	0	192	23	10.6	-	-	-	-	19524308	TA	-	19524307	8	5	550	1	0	1	0	1	0	0	1	0	17001	1536	53	0	15201	0	UBR4	1	19524307	Splice_Site	DEL	TA	TCGA-BH-A0HF-01A-11W-A071-09	24927	19524307	229726314	18	48080										
TCEB3	0	genome.wustl.edu	37	chr1	24082787	24082787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacaagcaaagatggcctttGtcaactctgtggccaagcca	10	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	24082787	24082787	G	A	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	missense	c.2074	p.V692I	1.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	13	0	0	18	30	62.5	-	-	-	A	24082787	G	A	24082787	3	1	550	1	0	0	0	0	1	0	0	0	15776	1377	48	4	2108	4	TCEB3	1	24082787	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4558480	24082787	225167834	19	48081										
TCEB3	0	genome.wustl.edu	37	chr1	24086039	24086039	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gccaagacaattaaagctttCaagaacagattctcccgacg	7	11	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	24086039	24086039	C	T	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	silent	c.2373	p.F791	1.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	88	0	0	76	38	33.04	-	-	-	T	24086039	C	T	24086039	2	4	550	1	0	0	0	0	0	0	0	1	15776	825	29	2		2	TCEB3	1	24086039	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3252	24086039	225164582	20	48082										
IL28RA	0	genome.wustl.edu	37	chr1	24484275	24484275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccctgactcgaggcgtcggcCtgacccctctggtcagttcc	11	17	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	24484275	24484275	C	T	SNP	IL28RA	ENST00000327535	human	ensembl	69_37n	-1	known	missense	c.908	p.R303K	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	IL28RA	HGNC	ENSG00000185436	304	0	0	131	20	13.25	-	-	-	T	24484275	C	T	24484275	3	4	550	1	0	0	0	0	1	0	0	0	7738	681	24	4	658	4	IL28RA	1	24484275	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	398236	24484275	224766346	21	48083										
C1orf63	0	genome.wustl.edu	37	chr1	25573240	25573240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcgagtagcgcctgtacttcCgctggtggcgccttcgggaa	15	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	25573240	25573240	C	T	SNP	C1orf63	ENST00000417642	human	ensembl	69_37n	-1	known	missense	c.194	p.R65Q	0.978	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616	42	0	0	47	19	28.79	-	-	-	T	25573240	C	T	25573240	3	4	550	1	0	0	0	0	1	0	0	0	2073	652	23	1	673	1	C1orf63	1	25573240	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1088965	25573240	223677381	22	48084										
PAFAH2	0	genome.wustl.edu	37	chr1	26310508	26310508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agggatccattcctcctgcaGcgattcattggtgggctggt	13	10	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	26310508	26310508	G	A	SNP	PAFAH2	ENST00000374282	human	ensembl	69_37n	-1	known	silent	c.481	p.L161	0.943	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pfam_Peptidase_S9,pirsf_Ac_Ohase_PAF	-	no_errors	PAFAH2	HGNC	ENSG00000158006	211	0	0	181	32	15.02	-	-	-	A	26310508	G	A	26310508	2	1	550	1	0	0	0	0	0	0	0	1	11460	962	34	4		4	PAFAH2	1	26310508	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	737268	26310508	222940113	23	48085										
ARID1A	0	genome.wustl.edu	37	chr1	27101250	27101250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctataattatgccaacaGgcagagcacgggctctgccc	10	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	27101250	27101250	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.4532	p.R1511K	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	102	0	0	69	29	29.29	-	-	-	A	27101250	G	A	27101250	3	1	550	1	0	0	0	0	1	0	0	0	915	1000	35	4	4602	4	ARID1A	1	27101250	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	790742	27101250	222149371	24	48086										
SLC9A1	0	genome.wustl.edu	37	chr1	27480809	27480809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtggagagaggccacagatgCcagaccgcagaaccatggtg	15	10	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	27480809	27480809	C	T	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	missense	c.17	p.G6D	0.207	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	34	0	0	26	12	31.58	-	-	-	T	27480809	C	T	27480809	3	4	550	1	0	0	0	0	1	0	0	0	14798	739	26	4	2478	4	SLC9A1	1	27480809	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	379559	27480809	221769812	25	48087										
COL16A1	0	genome.wustl.edu	37	chr1	32148561	32148561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccagagacactggccccagGaggtcccacaggtccggtgg	14	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	32148561	32148561	G	A	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.2509	p.P837S	0.939	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	48	0	0	26	10	27.78	-	-	-	A	32148561	G	A	32148561	3	1	550	1	0	0	0	0	1	0	0	0	3703	1174	41	2	2442	2	COL16A1	1	32148561	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4667752	32148561	217102060	26	48088										
CCDC28B	0	genome.wustl.edu	37	chr1	32667638	32667638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgtgcctaccagccacagCggctccttggccctaggact	10	17	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	32667638	32667638	C	T	SNP	CCDC28B	ENST00000373602	human	ensembl	69_37n	1	known	silent	c.102	p.S34	0.800	NULL	NULL	-	no_errors	CCDC28B	HGNC	ENSG00000160050	34	0	0	19	9	31.03	-	-	-	T	32667638	C	T	32667638	2	4	550	1	0	0	0	0	0	0	0	1	2829	767	27	1		1	CCDC28B	1	32667638	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	519077	32667638	216582983	27	48089										
ZNF362	0	genome.wustl.edu	37	chr1	33760591	33760591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acatcctggctgcgagaaggCtttcactcagctctccaacc	8	15	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	33760591	33760591	C	T	SNP	ZNF362	ENST00000373428	human	ensembl	69_37n	1	known	missense	c.962	p.A321V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	56	0	0	49	24	32.88	-	-	-	T	33760591	C	T	33760591	3	4	550	1	0	0	0	0	1	0	0	0	17964	797	28	4	984	4	ZNF362	1	33760591	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1092953	33760591	215490030	28	48090										
ZSCAN20	0	genome.wustl.edu	37	chr1	33957180	33957181	+	Frame_Shift_Ins	INS	-	-	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagagatggatgagcaggaINSggaagggggctgggatcctg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	33957180	33957181	-	G	INS	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	frame_shift_ins	c.1322_1323	p.E442fs	0.998:0.979	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	113	0	0	106	15	12.4	-	-	-	G	33957181	-	G	33957180	7	5	550	1	0	1	1	0	0	0	0	0	18324	304	11	0	1340	0	ZSCAN20	1	33957180	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	196589	33957180	215293441	29	48091	387	2								
ZSCAN20	0	genome.wustl.edu	37	chr1	33957186	33957187	+	In_Frame_Ins	INS	-	-	TCA													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atggatgagcaggaggaaggINSgggctgggatcctgaagaaa							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	33957186	33957187	-	TCA	INS	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	in_frame_ins	c.1328_1329	p.444in_frame_insQ	0.991:0.987	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	114	0	0	94	15	13.76	-	-	-	TCA	33957187	-	TCA	33957186	7	5	550	1	0	1	1	0	0	0	0	0	18324	1232	43	0	1346	0	ZSCAN20	1	33957186	In_Frame_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	6	33957186	215293435	30	48092	387	2								
ZSCAN20	0	genome.wustl.edu	37	chr1	33960296	33960296	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cattctaatctcatcactcaCcagagaattcacacggggga	7	12	5	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	33960296	33960296	C	T	SNP	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	silent	c.2352	p.H784	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	390	0	0	264	41	13.44	-	-	-	T	33960296	C	T	33960296	2	4	550	1	0	0	0	0	0	0	0	1	18324	506	18	4		4	ZSCAN20	1	33960296	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3110	33960296	215290325	31	48093										
ZMYM6	0	genome.wustl.edu	37	chr1	35477543	35477543	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agctgtatatagttccatttGacatggctaggtgatactga	10	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	35477543	35477543	G	A	SNP	ZMYM6	ENST00000357182	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337L	1.000	smart_TRASH	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH	-	no_errors	ZMYM6	HGNC	ENSG00000163867	130	0	0	74	54	42.19	-	-	-	A	35477543	G	A	35477543	3	1	550	1	0	0	0	0	1	0	0	0	17800	1294	45	2	3003	2	ZMYM6	1	35477543	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1517247	35477543	213773078	32	48094										
THRAP3	0	genome.wustl.edu	37	chr1	36752700	36752700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggctcaactctgccgagtgGtgccgggtatcagtctggga	16	10	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	36752700	36752700	G	A	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.869	p.G290D	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	139	0	0	131	46	25.99	-	-	-	A	36752700	G	A	36752700	3	1	550	1	0	0	0	0	1	0	0	0	15969	1261	44	4	875	4	THRAP3	1	36752700	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1275157	36752700	212497921	33	48095										
SF3A3	0	genome.wustl.edu	37	chr1	38446304	38446304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccatttcttctcaaactcaGcctgaatcttcccaaaaagt	3	14	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	38446304	38446304	G	A	SNP	SF3A3	ENST00000373019	human	ensembl	69_37n	-1	known	missense	c.644	p.A215V	0.037	NULL	pfam_DUF3449,pfam_SF3a60_bindingd,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A3	HGNC	ENSG00000183431	134	0	0	114	13	10.24	-	-	-	A	38446304	G	A	38446304	3	1	550	1	0	0	0	0	1	0	0	0	14236	971	34	4	901	4	SF3A3	1	38446304	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1693604	38446304	210804317	34	48096										
UTP11L	0	genome.wustl.edu	37	chr1	38484813	38484813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcatgtgttcttttttgacaCcaaaaaggaaggtatgaaat	9	5	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	38484813	38484813	C	T	SNP	UTP11L	ENST00000373014	human	ensembl	69_37n	1	known	missense	c.425	p.T142I	1.000	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	-	no_errors	UTP11L	HGNC	ENSG00000183520	105	0	0	181	32	15.02	-	-	-	T	38484813	C	T	38484813	3	4	550	1	0	0	0	0	1	0	0	0	17191	507	18	4	443	4	UTP11L	1	38484813	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	38509	38484813	210765808	35	48097										
RLF	0	genome.wustl.edu	37	chr1	40702596	40702596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtgcattgtgggcctcagcCttatatgtgtgtatctatag	11	7	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	40702596	40702596	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.2222	p.P741L	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	167	1	0.6	236	131	35.69	-	-	-	T	40702596	C	T	40702596	3	4	550	1	0	0	0	0	1	0	0	0	13475	681	24	4	2252	4	RLF	1	40702596	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2217783	40702596	208548025	36	48098										
LEPRE1	0	genome.wustl.edu	37	chr1	43213080	43213080	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccacactgaggctgcacctCtgcctaagggggacagaaag	12	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	43213080	43213080	C	T	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1918	p.E640K	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	51	0	0	38	8	17.39	-	-	-	T	43213080	C	T	43213080	3	4	550	1	0	0	0	0	1	0	0	0	8783	922	32	2	319	2	LEPRE1	1	43213080	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2510484	43213080	206037541	37	48099										
KDM4A	0	genome.wustl.edu	37	chr1	44134891	44134891	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgagcagtatgagatgacGgagtgcccggcagccctcgc	14	12	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	44134891	44134891	G	A	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	silent	c.1284	p.T428	0.991	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	167	0	0	136	31	18.56	-	-	-	A	44134891	G	A	44134891	2	1	550	1	0	0	0	0	0	0	0	1	8182	1103	39	1		1	KDM4A	1	44134891	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	921811	44134891	205115730	38	48100										
MUTYH	0	genome.wustl.edu	37	chr1	45800078	45800078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttaccatcacaggcagaagGcttggcctgactgttgttct	10	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	45800078	45800078	G	A	SNP	MUTYH	ENST00000450313	human	ensembl	69_37n	-1	known	missense	c.142	p.P48S	0.644	NULL	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781	154	0	0	96	11	10.28	-	-	-	A	45800078	G	A	45800078	3	1	550	1	0	0	0	0	1	0	0	0	10065	1203	42	4	1567	4	MUTYH	1	45800078	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1665187	45800078	203450543	39	48101										
PRDX1	0	genome.wustl.edu	37	chr1	45984688	45984688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttgaagttgggggcagggtGcccaattttagcatttcctg	13	7	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	45984688	45984688	G	A	SNP	PRDX1	ENST00000262746	human	ensembl	69_37n	-1	known	missense	c.28	p.H10Y	0.989	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX1	HGNC	ENSG00000117450	132	0	0	187	39	17.26	-	-	-	A	45984688	G	A	45984688	3	1	550	1	0	0	0	0	1	0	0	0	12545	1319	46	4	591	4	PRDX1	1	45984688	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	184610	45984688	203265933	40	48102										
LRRC41	0	genome.wustl.edu	37	chr1	46751384	46751384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttaggggcttaggctgtgggGctgagctagctggtgcccgt	18	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	46751384	46751384	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1145	p.A382V	0.879	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	210	0	0	285	38	11.73	-	-	-	A	46751384	G	A	46751384	3	1	550	1	0	0	0	0	1	0	0	0	9065	1203	42	4	1321	4	LRRC41	1	46751384	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	766696	46751384	202499237	41	48103										
ECHDC2	0	genome.wustl.edu	37	chr1	53364850	53364851	+	Frame_Shift_Ins	INS	-	-	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccaaaaccctctcacctccgINSttcctcggtcaatggctact							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	53364850	53364851	-	A	INS	ECHDC2	ENST00000371522	human	ensembl	69_37n	-1	known	frame_shift_ins	c.749_748	p.T250fs	0.453:0.497	NULL	pfam_Crotonase_core	-	no_errors	ECHDC2	HGNC	ENSG00000121310	58	0	0	38	12	24	-	-	-	A	53364851	-	A	53364850	7	5	550	1	0	1	1	0	0	0	0	0	4929	1145	40	0	141	0	ECHDC2	1	53364850	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	6613466	53364850	195885771	42	48104	388	3								
ECHDC2	0	genome.wustl.edu	37	chr1	53364852	53364852	+	Silent	SNP	T	T	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaaaccctctcacctccgtTcctcggtcaatggctacttt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	53364852	53364852	T	C	SNP	ECHDC2	ENST00000371522	human	ensembl	69_37n	-1	known	silent	c.747	p.G249	0.505	NULL	pfam_Crotonase_core	-	no_errors	ECHDC2	HGNC	ENSG00000121310	59	0	0	39	14	26.42	-	-	-	C	53364852	T	C	53364852	2	2	550	1	0	0	0	0	0	0	0	1	4929	1770	62	5		5	ECHDC2	1	53364852	Silent	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	2	53364852	195885769	43	48105	388	3								
ECHDC2	0	genome.wustl.edu	37	chr1	53364856	53364858	+	In_Frame_Del	DEL	CGG	CGG	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accctctcacctccgttcctCggtcaatggctactttgccc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	53364856	53364858	CGG	-	DEL	ECHDC2	ENST00000371522	human	ensembl	69_37n	-1	known	in_frame_del	c.743_741	p.DR247in_frame_delE	1.000:1.000:1.000	NULL	pfam_Crotonase_core	-	no_errors	ECHDC2	HGNC	ENSG00000121310	58	0	0	37	12	24.49	-	-	-	-	53364858	CGG	-	53364856	7	5	550	1	0	1	0	1	0	0	0	0	4929	884	31	0	147	0	ECHDC2	1	53364856	In_Frame_Del	DEL	CGG	TCGA-BH-A0HF-01A-11W-A071-09	4	53364856	195885765	44	48106	388	3								
YIPF1	0	genome.wustl.edu	37	chr1	54344353	54344353	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaagaatgtttggtagtattCaaatgtccagaagggggagc	13	4	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	54344353	54344353	C	T	SNP	YIPF1	ENST00000539954	human	ensembl	69_37n	-1	known	missense	c.313	p.E105K	1.000	superfamily_Ribonuclease/ribotoxin	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799	126	0	0	235	51	17.77	-	-	-	T	54344353	C	T	54344353	3	4	550	1	0	0	0	0	1	0	0	0	17574	835	29	2	706	2	YIPF1	1	54344353	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	979497	54344353	194906268	45	48107										
C1orf168	0	genome.wustl.edu	37	chr1	57254752	57254752	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggaggacccagggagtcgatGgagggcaatggctttgtttt	17	6	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	57254752	57254752	G	A	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	silent	c.813	p.S271	0.014	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	164	0	0	149	49	24.75	-	-	-	A	57254752	G	A	57254752	2	1	550	1	0	0	0	0	0	0	0	1	2031	1335	47	4		4	C1orf168	1	57254752	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2910399	57254752	191995869	46	48108										
CACHD1	0	genome.wustl.edu	37	chr1	65095064	65095064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagacaacctgaaatccaacCctggaattaagtggcaatat	7	10	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	65095064	65095064	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.544	p.P182S	1.000	pfam_VWA_N	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	372	0	0	222	102	31.48	-	-	-	T	65095064	C	T	65095064	3	4	550	1	0	0	0	0	1	0	0	0	2562	623	22	4	409	4	CACHD1	1	65095064	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7840312	65095064	184155557	47	48109										
JAK1	0	genome.wustl.edu	37	chr1	65323391	65323391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggatgttgtcaaagtcggtgCagctccacctcagcacgtac	11	12	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	65323391	65323391	C	T	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.1406	p.C469Y	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,smart_SH2,pfscan_SH2	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	74	0	0	69	29	29.59	-	-	-	T	65323391	C	T	65323391	3	4	550	1	0	0	0	0	1	0	0	0	7991	710	25	4	2122	4	JAK1	1	65323391	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	228327	65323391	183927230	48	48110										
MSH4	0	genome.wustl.edu	37	chr1	76262783	76262783	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caatttcggactccaggagaCtccacagagccgcccttcgg	10	15	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	76262783	76262783	C	G	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	missense	c.113	p.T38S	0.006	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	53	0	0	65	42	39.25	-	-	-	G	76262783	C	G	76262783	3	3	550	1	0	0	0	0	1	0	0	0	9944	565	20	4	115	4	MSH4	1	76262783	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	10939392	76262783	172987838	49	48111										
IFI44	0	genome.wustl.edu	37	chr1	79125142	79125142	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgatagtaaagatcaaaaGaattcgaagggagttggtaa	12	2	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	79125142	79125142	G	A	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	missense	c.986	p.R329K	0.004	NULL	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	83	0	0	60	15	20	-	-	-	A	79125142	G	A	79125142	3	1	550	1	0	0	0	0	1	0	0	0	7571	942	33	2	1004	2	IFI44	1	79125142	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2862359	79125142	170125479	50	48112										
DDAH1	0	genome.wustl.edu	37	chr1	85816197	85816197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcaacccatctgccactggCactgtggagactgcatagtc	10	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	85816197	85816197	C	T	SNP	DDAH1	ENST00000284031	human	ensembl	69_37n	-1	known	silent	c.498	p.V166	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904	228	0	0	187	21	10.1	-	-	-	T	85816197	C	T	85816197	2	4	550	1	0	0	0	0	0	0	0	1	4352	697	25	4		4	DDAH1	1	85816197	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6691055	85816197	163434424	51	48113										
LRRC8B	0	genome.wustl.edu	37	chr1	90049388	90049388	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcctatcagaggtcagtgaGaacaaactgaaacagatcaa	8	8	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	90049388	90049388	G	A	SNP	LRRC8B	ENST00000330947	human	ensembl	69_37n	1	known	silent	c.1179	p.E393	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147	219	0	0	154	23	12.92	-	-	-	A	90049388	G	A	90049388	2	1	550	1	0	0	0	0	0	0	0	1	9088	933	33	2		2	LRRC8B	1	90049388	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4233191	90049388	159201233	52	48114										
VCAM1	0	genome.wustl.edu	37	chr1	101198114	101198114	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agctccctaacggggagctaCagcctctttctgagaatgca	10	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	101198114	101198114	C	T	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	nonsense	c.1666	p.Q556*	0.247	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	151	0	0	106	17	13.82	-	-	-	T	101198114	C	T	101198114	4	4	550	1	0	0	0	0	0	1	0	0	17234	479	17	4	1692	4	VCAM1	1	101198114	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	11148726	101198114	148052507	53	48115										
S1PR1	0	genome.wustl.edu	37	chr1	101705563	101705563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gactctgctggcaaattcaaGcgacccatcatcgccggcat	9	14	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	101705563	101705563	G	A	SNP	S1PR1	ENST00000305352	human	ensembl	69_37n	1	known	silent	c.1023	p.K341	0.372	prints_EDG1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG1_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989	205	0	0	134	93	40.97	-	-	-	A	101705563	G	A	101705563	2	1	550	1	0	0	0	0	0	0	0	1	13879	962	34	4		4	S1PR1	1	101705563	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	507449	101705563	147545058	54	48116										
EPS8L3	0	genome.wustl.edu	37	chr1	110302173	110302174	+	RNA	INS	-	-	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtcccctgtctcttcctaggINScttgggtgtgtgttgtatgt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	110302173	110302174	-	A	INS	EPS8L3	ENST00000494151	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021:0.037	-	-	-	no_errors	EPS8L3	HGNC	ENSG00000198758	21	0	0	14	6	30	-	-	-	A	110302174	-	A	110302173	6	5	550	0	1	1	1	0	0	0	0	0	5234	1218	42	0		0	EPS8L3	1	110302173	RNA	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	8596610	110302173	138948448	55	48117	389	2								
EPS8L3	0	genome.wustl.edu	37	chr1	110302176	110302177	+	RNA	DEL	TG	TG	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctgtctcttcctaggctTgggtgtgtgttgtatgtggg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	110302176	110302177	TG	-	DEL	EPS8L3	ENST00000494151	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.401:0.471	-	-	-	no_errors	EPS8L3	HGNC	ENSG00000198758	20	0	0	16	6	26.09	-	-	-	-	110302177	TG	-	110302176	6	5	550	0	1	1	0	1	0	0	0	0	5234	1827	63	0		0	EPS8L3	1	110302176	RNA	DEL	TG	TCGA-BH-A0HF-01A-11W-A071-09	3	110302176	138948445	56	48118	389	2								
RBM15	0	genome.wustl.edu	37	chr1	110882589	110882589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttagtgacgaagcggtggagGacggcctgtttcatgagttc	15	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	110882589	110882589	G	A	SNP	RBM15	ENST00000369784	human	ensembl	69_37n	1	known	missense	c.562	p.D188N	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	37	0	0	47	45	48.91	-	-	-	A	110882589	G	A	110882589	3	1	550	1	0	0	0	0	1	0	0	0	13199	1174	41	2	564	2	RBM15	1	110882589	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	580413	110882589	138368032	57	48119										
OVGP1	0	genome.wustl.edu	37	chr1	111962264	111962264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgatggcattgtcatagcCaacccactctttccccttgt	7	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	111962264	111962264	C	T	SNP	OVGP1	ENST00000369732	human	ensembl	69_37n	-1	known	missense	c.988	p.G330S	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	389	0	0	223	42	15.79	-	-	-	T	111962264	C	T	111962264	3	4	550	1	0	0	0	0	1	0	0	0	11398	594	21	4	1060	4	OVGP1	1	111962264	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1079675	111962264	137288357	58	48120										
MOV10	0	genome.wustl.edu	37	chr1	113242003	113242003	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atattcttaacagatacttaGtgattgttttcaggaaagtt	7	4	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	113242003	113242003	G	A	SNP	MOV10	ENST00000468624	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363	8	0	0	9	13	59.09	-	-	-	A	113242003	G	A	113242003	1	1	550	0	1	0	0	0	0	0	0	0	9790	1044	36	4		4	MOV10	1	113242003	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1279739	113242003	136008618	59	48121										
MOV10	0	genome.wustl.edu	37	chr1	113242153	113242153	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccacagcctacctcccatccCctttccctgggccgtgtcgc	7	21	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	113242153	113242153	C	T	SNP	MOV10	ENST00000468624	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363	56	0	0	62	9	12.68	-	-	-	T	113242153	C	T	113242153	1	4	550	0	1	0	0	0	0	0	0	0	9790	638	22	4		4	MOV10	1	113242153	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	150	113242153	136008468	60	48122										
MOV10	0	genome.wustl.edu	37	chr1	113242885	113242885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cggagggtataccgggtgtcCcttccctgccaaactggacc	12	14	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	113242885	113242885	C	T	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.2843	p.P948L	1.000	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	98	0	0	71	11	13.41	-	-	-	T	113242885	C	T	113242885	3	4	550	1	0	0	0	0	1	0	0	0	9790	623	22	4	2917	4	MOV10	1	113242885	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	732	113242885	136007736	61	48123										
SYCP1	0	genome.wustl.edu	37	chr1	115398095	115398095	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taacagagaaaatggaaaagCaaaagccctttgcattgttc	8	7	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	115398095	115398095	C	T	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	nonsense	c.10	p.Q4*	0.998	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	73	0	0	62	16	20	-	-	-	T	115398095	C	T	115398095	4	4	550	1	0	0	0	0	0	1	0	0	15523	711	25	4	12	4	SYCP1	1	115398095	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2155210	115398095	133852526	62	48124										
NOTCH2	0	genome.wustl.edu	37	chr1	120510700	120510700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaaagttctgcttactcacCcatggcacattcatccacat	4	13	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	120510700	120510700	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.1264	p.A422T	1.000	pirsf_Notch,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	126	0	0	62	17	21.52	-	-	-	T	120510700	C	T	120510700	3	4	550	1	0	0	0	0	1	0	0	0	10620	637	22	4	6263	4	NOTCH2	1	120510700	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5112605	120510700	128739921	63	48125										
TARS2	0	genome.wustl.edu	37	chr1	150463906	150463906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagctgcctgttttggagcgGatttgccaggaacttacagc	13	9	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	150463906	150463906	G	A	SNP	TARS2	ENST00000438568	human	ensembl	69_37n	1	known	missense	c.424	p.D142N	0.000	NULL	pfam_TGS,superfamily_TGS-like	-	no_errors	TARS2	HGNC	ENSG00000143374	68	0	0	85	28	24.78	-	-	-	A	150463906	G	A	150463906	3	1	550	1	0	0	0	0	1	0	0	0	15652	1161	41	2	567	2	TARS2	1	150463906	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	29953206	150463906	98786715	64	48126										
TARS2	0	genome.wustl.edu	37	chr1	150464915	150464915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cattggttgacctttgccagGgcccccaccttcggcatact	9	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	150464915	150464915	G	A	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	1	known	missense	c.724	p.G242S	0.999	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	75	0	0	92	44	32.35	-	-	-	A	150464915	G	A	150464915	3	1	550	1	0	0	0	0	1	0	0	0	15652	1232	43	4	750	4	TARS2	1	150464915	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1009	150464915	98785706	65	48127										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150530562	150530562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggacatctcccccggcccaaCatcacccagtcttgccagct	7	19	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	150530562	150530562	C	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	silent	c.2388	p.N796	0.999	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	45	0	0	11	8	42.11	-	-	-	T	150530562	C	T	150530562	2	4	550	1	0	0	0	0	0	0	0	1	277	477	17	4		4	ADAMTSL4	1	150530562	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	65647	150530562	98720059	66	48128										
GABPB2	0	genome.wustl.edu	37	chr1	151060733	151060733	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggccaagatgatgaagtgaGaacgttgatggcaaatggcg	15	5	0	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	151060733	151060733	G	A	SNP	GABPB2	ENST00000368918	human	ensembl	69_37n	1	known	missense	c.68	p.R23K	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458	46	0	0	38	5	11.63	-	-	-	A	151060733	G	A	151060733	3	1	550	1	0	0	0	0	1	0	0	0	6208	942	33	2	70	2	GABPB2	1	151060733	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	530171	151060733	98189888	67	48129										
SEMA6C	0	genome.wustl.edu	37	chr1	151107066	151107066	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catggccatgtgcagctttgGctgcaacagcagctgcctct	11	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	151107066	151107066	G	A	SNP	SEMA6C	ENST00000489944	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SEMA6C	HGNC	ENSG00000143434	72	0	0	47	6	11.32	-	-	-	A	151107066	G	A	151107066	1	1	550	0	1	0	0	0	0	0	0	0	14129	1218	42	4		4	SEMA6C	1	151107066	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	46333	151107066	98143555	68	48130										
MRPL9	0	genome.wustl.edu	37	chr1	151735311	151735311	+	RNA	SNP	A	A	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgctggaggccagtgtcacAatcacaatagtttttatggc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	151735311	151735311	A	C	SNP	MRPL9	ENST00000462783	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	MRPL9	HGNC	ENSG00000143436	57	0	0	77	12	13.48	-	-	-	C	151735311	A	C	151735311	1	2	550	0	1	0	0	0	0	0	0	0	9892	145	5	5		5	MRPL9	1	151735311	RNA	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	628245	151735311	97515310	69	48131	390	2								
MRPL9	0	genome.wustl.edu	37	chr1	151735312	151735312	+	RNA	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctggaggccagtgtcacaAtcacaatagtttttatggct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	151735312	151735312	A	T	SNP	MRPL9	ENST00000462783	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	MRPL9	HGNC	ENSG00000143436	56	0	0	77	15	16.3	-	-	-	T	151735312	A	T	151735312	1	4	550	0	1	0	0	0	0	0	0	0	9892	116	4	5		5	MRPL9	1	151735312	RNA	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1	151735312	97515309	70	48132	390	2								
S100A2	0	genome.wustl.edu	37	chr1	153536310	153536310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggagtacttgtggaaggtaGtgaccagcacagccagcgcc	14	10	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	153536310	153536310	G	A	SNP	S100A2	ENST00000368707	human	ensembl	69_37n	-1	known	missense	c.41	p.T14I	0.001	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	S100A2	HGNC	ENSG00000196754	63	0	0	26	15	35.71	-	-	-	A	153536310	G	A	153536310	3	1	550	1	0	0	0	0	1	0	0	0	13864	1029	36	4	260	4	S100A2	1	153536310	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1800998	153536310	95714311	71	48133										
DENND4B	0	genome.wustl.edu	37	chr1	153905397	153905397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaaggggcaggcgcagaagGggcaggttgtgttgaggtta	19	5	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	153905397	153905397	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.3563	p.P1188L	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	62	0	0	37	20	35.09	-	-	-	A	153905397	G	A	153905397	3	1	550	1	0	0	0	0	1	0	0	0	4470	1232	43	4	955	4	DENND4B	1	153905397	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	369087	153905397	95345224	72	48134										
ADAM15	0	genome.wustl.edu	37	chr1	155032746	155032746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tattggtcctggtgatgcttGgtgccagctactggtaccgt	13	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	155032746	155032746	G	A	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	missense	c.2134	p.G712S	1.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	60	0	0	14	5	26.32	-	-	-	A	155032746	G	A	155032746	3	1	550	1	0	0	0	0	1	0	0	0	237	1348	47	4	2204	4	ADAM15	1	155032746	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1127349	155032746	94217875	73	48135										
EFNA4	0	genome.wustl.edu	37	chr1	155041462	155041462	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttcgtcttctgcgaattctGtgagccaagcagaccttccc	8	14	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	155041462	155041462	G	A	SNP	EFNA4	ENST00000368409	human	ensembl	69_37n	1	known	silent	c.603	p.L201	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364	59	0	0	63	20	24.1	-	-	-	A	155041462	G	A	155041462	2	1	550	1	0	0	0	0	0	0	0	1	4988	1364	48	4		4	EFNA4	1	155041462	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8716	155041462	94209159	74	48136										
GON4L	0	genome.wustl.edu	37	chr1	155747443	155747443	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctgctggagtctcttcctCtgtgctgggtccagaatcag	12	11	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	155747443	155747443	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.2061	p.Q687	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	189	0	0	230	29	11.2	-	-	-	T	155747443	C	T	155747443	2	4	550	1	0	0	0	0	0	0	0	1	6621	912	32	2		2	GON4L	1	155747443	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	705981	155747443	93503178	75	48137										
SMG5	0	genome.wustl.edu	37	chr1	156230287	156230287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgatccgtgtcaaagttaaaGcgtctgtgggcagctcggag	14	9	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	156230287	156230287	G	A	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	silent	c.2238	p.R746	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	93	0	0	78	30	27.78	-	-	-	A	156230287	G	A	156230287	2	1	550	1	0	0	0	0	0	0	0	1	14885	958	34	4		4	SMG5	1	156230287	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	482844	156230287	93020334	76	48138										
ISG20L2	0	genome.wustl.edu	37	chr1	156693082	156693082	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagctgtccattggtccactGccctgtttctcctgggtgct	11	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	156693082	156693082	G	A	SNP	ISG20L2	ENST00000472824	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ISG20L2	HGNC	ENSG00000143319	114	0	0	104	50	32.47	-	-	-	A	156693082	G	A	156693082	1	1	550	0	1	0	0	0	0	0	0	0	7909	1334	46	4		4	ISG20L2	1	156693082	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	462795	156693082	92557539	77	48139										
DCAF8	0	genome.wustl.edu	37	chr1	160209851	160209851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtcacggttagcccgcttgCgctgtacacggcgccgaggc	15	14	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	160209851	160209851	C	T	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	missense	c.821	p.R274H	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	76	0	0	109	32	22.7	-	-	-	T	160209851	C	T	160209851	3	4	550	1	0	0	0	0	1	0	0	0	4308	768	27	1	1478	1	DCAF8	1	160209851	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3516769	160209851	89040770	78	48140										
SLAMF7	0	genome.wustl.edu	37	chr1	160709057	160709057	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtaatacctaagagggaagtGgcttcatttcagtggctgac	12	7	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	160709057	160709057	G	A	SNP	SLAMF7	ENST00000466792	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLAMF7	HGNC	ENSG00000026751	214	0	0	143	21	12.73	-	-	-	A	160709057	G	A	160709057	1	1	550	0	1	0	0	0	0	0	0	0	14458	1363	47	4		4	SLAMF7	1	160709057	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	499206	160709057	88541564	79	48141										
DEDD	0	genome.wustl.edu	37	chr1	161092974	161092974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgctacacatctgaggaccCgaagtggggcaacacaccac	10	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	161092974	161092974	C	T	SNP	DEDD	ENST00000368005	human	ensembl	69_37n	-1	known	silent	c.471	p.S157	0.828	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD	HGNC	ENSG00000158796	121	0	0	106	49	31.61	-	-	-	T	161092974	C	T	161092974	2	4	550	1	0	0	0	0	0	0	0	1	4415	639	23	1		1	DEDD	1	161092974	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	383917	161092974	88157647	80	48142										
PPOX	0	genome.wustl.edu	37	chr1	161140119	161140120	+	RNA	INS	-	-	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgagactctgtcccccccaINScccccccaaaaaaatgggaa							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	161140119	161140120	-	C	INS	PPOX	ENST00000466452	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	PPOX	HGNC	ENSG00000143224	9	0	0	5	3	37.5	-	-	-	C	161140120	-	C	161140119	6	5	550	0	1	1	1	0	0	0	0	0	12425	174	6	0		0	PPOX	1	161140119	RNA	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	47145	161140119	88110502	81	48143										
CACNA1E	0	genome.wustl.edu	37	chr1	181452987	181452987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgtgccggcctcggggcaggCggccgcctacaagcagacga	16	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	181452987	181452987	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.107	p.A36V	0.995	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	96	0	0	65	21	24.42	-	-	-	T	181452987	C	T	181452987	3	4	550	1	0	0	0	0	1	0	0	0	2567	768	27	1	109	1	CACNA1E	1	181452987	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	20312868	181452987	67797634	82	48144										
CDC73	0	genome.wustl.edu	37	chr1	193202215	193202215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agaccagatgcaaccaggggGcactgcaattagtgttacag	12	9	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	193202215	193202215	G	A	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.1247	p.G416D	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	283	0	0	258	37	12.54	-	-	-	A	193202215	G	A	193202215	3	1	550	1	0	0	0	0	1	0	0	0	3114	1203	42	4	1301	4	CDC73	1	193202215	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11749228	193202215	56048406	83	48145										
KIF14	0	genome.wustl.edu	37	chr1	200587461	200587461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcagctgttttccacttttCtgcagaatctgttttagcac	6	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	200587461	200587461	C	T	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.391	p.E131K	0.897	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	124	0	0	196	23	10.45	-	-	-	T	200587461	C	T	200587461	3	4	550	1	0	0	0	0	1	0	0	0	8328	922	32	2	4671	2	KIF14	1	200587461	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7385246	200587461	48663160	84	48146										
IGFN1	0	genome.wustl.edu	37	chr1	201196159	201196159	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctcgccccggccccacgtcAcctggttcaagaatgaccgc	10	18	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	201196159	201196159	A	T	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.10936	p.T3646S	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	42	0	0	26	30	53.57	-	-	-	T	201196159	A	T	201196159	3	4	550	1	0	0	0	0	1	0	0	0	7644	159	6	5	11022	5	IGFN1	1	201196159	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	608698	201196159	48054462	85	48147										
NAV1	0	genome.wustl.edu	37	chr1	201758893	201758893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctcagtgctgtccctggcCtccagtgcctcctccaccta	9	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	201758893	201758893	C	T	SNP	NAV1	ENST00000430015	human	ensembl	69_37n	1	novel	missense	c.1864	p.L622F	0.947	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAV1	HGNC	ENSG00000134369	139	0	0	56	7	11.11	-	-	-	T	201758893	C	T	201758893	3	4	550	1	0	0	0	0	1	0	0	0	10255	668	24	4	3291	4	NAV1	1	201758893	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	562734	201758893	47491728	86	48148										
SHISA4	0	genome.wustl.edu	37	chr1	201859621	201859621	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcgcctcagctgtgatcctCtttgttgctgtggttgccac	10	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	201859621	201859621	C	T	SNP	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	silent	c.285	p.L95	1.000	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	196	0	0	123	21	14.58	-	-	-	T	201859621	C	T	201859621	2	4	550	1	0	0	0	0	0	0	0	1	14371	900	32	2		2	SHISA4	1	201859621	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	100728	201859621	47391000	87	48149										
CYB5R1	0	genome.wustl.edu	37	chr1	202934483	202934483	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgggagacaggctcaaggaGaagacaggtcattacctttt	13	7	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	202934483	202934483	G	A	SNP	CYB5R1	ENST00000497655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	235	0	0	187	24	11.37	-	-	-	A	202934483	G	A	202934483	1	1	550	0	1	0	0	0	0	0	0	0	4157	957	33	2		2	CYB5R1	1	202934483	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1074862	202934483	46316138	88	48150										
CHI3L1	0	genome.wustl.edu	37	chr1	203154352	203154352	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catgccgtagagcgtcacatCattccactcccaggtgtcga	9	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	203154352	203154352	C	T	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.217	p.D73N	0.999	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	110	0	0	74	14	15.91	-	-	-	T	203154352	C	T	203154352	3	4	550	1	0	0	0	0	1	0	0	0	3369	826	29	2	966	2	CHI3L1	1	203154352	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	219869	203154352	46096269	89	48151										
NFASC	0	genome.wustl.edu	37	chr1	204943796	204943796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgttgtgaggtttaagaatgGgcaaggaagcaacctggatg	15	4	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	204943796	204943796	G	A	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.1403	p.G468E	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	130	0	0	157	37	18.97	-	-	-	A	204943796	G	A	204943796	3	1	550	1	0	0	0	0	1	0	0	0	10431	1232	43	4	1504	4	NFASC	1	204943796	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1789444	204943796	44306825	90	48152										
TMEM81	0	genome.wustl.edu	37	chr1	205052741	205052741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcaccaacacgccaccaacCactccaatggcaattcctat	3	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	205052741	205052741	C	T	SNP	TMEM81	ENST00000367167	human	ensembl	69_37n	-1	known	silent	c.708	p.V236	0.220	NULL	pfscan_Ig-like	-	no_errors	TMEM81	HGNC	ENSG00000174529	181	0	0	135	92	40.53	-	-	-	T	205052741	C	T	205052741	2	4	550	1	0	0	0	0	0	0	0	1	16300	581	21	4		4	TMEM81	1	205052741	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	108945	205052741	44197880	91	48153										
SLC41A1	0	genome.wustl.edu	37	chr1	205760783	205760783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggatggagaagttgtccgGgtccaggccccggccccaca	15	13	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	205760783	205760783	G	A	SNP	SLC41A1	ENST00000367137	human	ensembl	69_37n	-1	known	missense	c.1420	p.P474S	1.000	pfam_MgtE_Mg_transptr_membr	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A1	HGNC	ENSG00000133065	45	0	0	59	18	23.38	-	-	-	A	205760783	G	A	205760783	3	1	550	1	0	0	0	0	1	0	0	0	14718	1232	43	4	125	4	SLC41A1	1	205760783	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	708042	205760783	43489838	92	48154										
SLC26A9	0	genome.wustl.edu	37	chr1	205884082	205884082	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggctctgggacactttttGaagcttgtacagcaggccag	13	9	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	205884082	205884082	G	A	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	nonsense	c.2602	p.Q868*	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	89	0	0	64	47	42.34	-	-	-	A	205884082	G	A	205884082	4	1	550	1	0	0	0	0	0	1	0	0	14613	1299	45	2	65	2	SLC26A9	1	205884082	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	123299	205884082	43366539	93	48155										
PLXNA2	0	genome.wustl.edu	37	chr1	208206683	208206683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccttggtggccagtagccggGtcaggtagatctcggacacc	14	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	208206683	208206683	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.5036	p.T1679I	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	51	0	0	68	49	41.88	-	-	-	A	208206683	G	A	208206683	3	1	550	1	0	0	0	0	1	0	0	0	12194	1261	44	4	668	4	PLXNA2	1	208206683	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2322601	208206683	41043938	94	48156										
NEK2	0	genome.wustl.edu	37	chr1	211846917	211846917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccaaagtctccaagcttgaCgttttgcttgccatccagga	8	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	211846917	211846917	C	T	SNP	NEK2	ENST00000366999	human	ensembl	69_37n	-1	known	missense	c.463	p.V155I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK2	HGNC	ENSG00000117650	171	0	0	142	19	11.8	-	-	-	T	211846917	C	T	211846917	3	4	550	1	0	0	0	0	1	0	0	0	10396	536	19	1	898	1	NEK2	1	211846917	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3640234	211846917	37403704	95	48157										
FAM71A	0	genome.wustl.edu	37	chr1	212799282	212799282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caggcaagtcctcagagcatGtttccagcgcatccatgagc	10	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	212799282	212799282	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	missense	c.1063	p.V355I	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	62	0	0	53	8	13.11	-	-	-	A	212799282	G	A	212799282	3	1	550	1	0	0	0	0	1	0	0	0	5652	1377	48	4	1065	4	FAM71A	1	212799282	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	952365	212799282	36451339	96	48158										
FAM71A	0	genome.wustl.edu	37	chr1	212799693	212799693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcacagggactcgcataaaGgtgtcagccacacgcccatc	11	14	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	212799693	212799693	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	missense	c.1474	p.G492S	0.032	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	87	0	0	87	13	13	-	-	-	A	212799693	G	A	212799693	3	1	550	1	0	0	0	0	1	0	0	0	5652	1000	35	4	1476	4	FAM71A	1	212799693	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	411	212799693	36450928	97	48159										
ANGEL2	0	genome.wustl.edu	37	chr1	213178657	213178657	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtaaaactaatccaacattGtctctgtccaacagagaaat	5	9	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	213178657	213178657	G	A	SNP	ANGEL2	ENST00000366962	human	ensembl	69_37n	-1	known	silent	c.852	p.D284	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	172	0	0	282	53	15.77	-	-	-	A	213178657	G	A	213178657	2	1	550	1	0	0	0	0	0	0	0	1	609	1368	48	4		4	ANGEL2	1	213178657	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	378964	213178657	36071964	98	48160										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220326535	220326535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtcatgattacctcttctcCtaagtggtcaactccatagt	7	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	220326535	220326535	C	T	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.3859	p.G1287R	0.991	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	223	0	0	173	32	15.61	-	-	-	T	220326535	C	T	220326535	3	4	550	1	0	0	0	0	1	0	0	0	13019	690	24	4	334	4	RAB3GAP2	1	220326535	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7147878	220326535	28924086	99	48161										
FBXO28	0	genome.wustl.edu	37	chr1	224318194	224318194	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtttgtaaaagaatggacttGgtctgccagagaatgttgaa	12	4	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	224318194	224318194	G	A	SNP	FBXO28	ENST00000366862	human	ensembl	69_37n	1	known	silent	c.288	p.L96	1.000	pfscan_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO28	HGNC	ENSG00000143756	111	0	0	107	19	15.08	-	-	-	A	224318194	G	A	224318194	2	1	550	1	0	0	0	0	0	0	0	1	5784	1339	47	4		4	FBXO28	1	224318194	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3991659	224318194	24932427	100	48162										
TMEM63A	0	genome.wustl.edu	37	chr1	226047030	226047030	+	Missense_Mutation	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgtagccaccagcggaggcCctggatagagaggttcttcc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	226047030	226047030	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1243	p.G415S	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	59	0	0	44	23	34.33	-	-	-	T	226047030	C	T	226047030	3	4	550	1	0	0	0	0	1	0	0	0	16285	623	22	4	1220	4	TMEM63A	1	226047030	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1728836	226047030	23203591	101	48163	391	2								
TMEM63A	0	genome.wustl.edu	37	chr1	226047031	226047031	+	Missense_Mutation	SNP	C	C	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtagccaccagcggaggccCtggatagagaggttcttcct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	226047031	226047031	C	A	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1242	p.Q414H	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	59	0	0	44	18	29.03	-	-	-	A	226047031	C	A	226047031	3	1	550	1	0	0	0	0	1	0	0	0	16285	680	24	4	1221	4	TMEM63A	1	226047031	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1	226047031	23203590	102	48164	391	2								
PARP1	0	genome.wustl.edu	37	chr1	226570790	226570790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgaggctgtggagggcggaGgcgtggccgccacggaggcg	22	11	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	226570790	226570790	G	A	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.1106	p.P369L	0.807	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	119	0	0	149	31	17.22	-	-	-	A	226570790	G	A	226570790	3	1	550	1	0	0	0	0	1	0	0	0	11527	1000	35	4	2002	4	PARP1	1	226570790	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	523759	226570790	22679831	103	48165										
SNAP47	0	genome.wustl.edu	37	chr1	227947065	227947065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atatctgccaagatgccagaGgttatccccattttagaagt	8	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	227947065	227947065	G	A	SNP	SNAP47	ENST00000426344	human	ensembl	69_37n	1	known	missense	c.976	p.G326S	0.917	NULL	pfscan_T_SNARE_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNAP47	HGNC	ENSG00000143740	78	0	0	55	13	19.12	-	-	-	A	227947065	G	A	227947065	3	1	550	1	0	0	0	0	1	0	0	0	14921	991	35	4	1012	4	SNAP47	1	227947065	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1376275	227947065	21303556	104	48166										
TRIM17	0	genome.wustl.edu	37	chr1	228601546	228601546	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggcctgcagattccctgtCctggtgatctgctcccgaag	11	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	228601546	228601546	C	T	SNP	TRIM17	ENST00000295033	human	ensembl	69_37n	-1	known	silent	c.477	p.R159	0.065	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	34	0	0	29	6	17.14	-	-	-	T	228601546	C	T	228601546	2	4	550	1	0	0	0	0	0	0	0	1	16589	854	30	2		2	TRIM17	1	228601546	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	654481	228601546	20649075	105	48167										
NUP133	0	genome.wustl.edu	37	chr1	229635512	229635512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taggtatcttcaccagcaagGcttggccaatagcggataga	11	9	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	229635512	229635512	G	A	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	silent	c.567	p.S189	0.999	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	155	0	0	116	26	18.31	-	-	-	A	229635512	G	A	229635512	2	1	550	1	0	0	0	0	0	0	0	1	10827	1194	42	4		4	NUP133	1	229635512	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1033966	229635512	19615109	106	48168										
ABCB10	0	genome.wustl.edu	37	chr1	229666009	229666009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgatttgccagaaccacttgGgccaaccagtgccgtgacag	11	12	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	229666009	229666009	G	A	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.1582	p.P528S	0.999	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	190	0	0	222	56	20.14	-	-	-	A	229666009	G	A	229666009	3	1	550	1	0	0	0	0	1	0	0	0	41	1232	43	4	658	4	ABCB10	1	229666009	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	30497	229666009	19584612	107	48169										
URB2	0	genome.wustl.edu	37	chr1	229771271	229771271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctctgttgtggccaactcagTggccttgctgtataagctct	10	11	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	229771271	229771271	T	C	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.911	p.V304A	0.973	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	60	0	0	41	18	30.51	-	-	-	C	229771271	T	C	229771271	3	2	550	1	0	0	0	0	1	0	0	0	17122	1696	59	5	921	5	URB2	1	229771271	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	105262	229771271	19479350	108	48170										
EXOC8	0	genome.wustl.edu	37	chr1	231472387	231472387	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggaggtgggctaggtttatCttccaggtaatggttcaatt	13	5	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	231472387	231472387	C	T	SNP	EXOC8	ENST00000360394	human	ensembl	69_37n	-1	known	missense	c.1105	p.D369N	1.000	superfamily_Cullin_repeat-like_dom	pfam_Vps51,superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903	90	0	0	72	21	22.58	-	-	-	T	231472387	C	T	231472387	3	4	550	1	0	0	0	0	1	0	0	0	5347	913	32	2	1076	2	EXOC8	1	231472387	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1701116	231472387	17778234	109	48171										
DISC1	0	genome.wustl.edu	37	chr1	231830350	231830350	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacttggcccaggccgcaagGaacagctccaggccagagcg	14	14	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	231830350	231830350	G	A	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	silent	c.846	p.R282	0.000	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	61	0	0	63	7	10	-	-	-	A	231830350	G	A	231830350	2	1	550	1	0	0	0	0	0	0	0	1	4574	1165	41	2		2	DISC1	1	231830350	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	357963	231830350	17420271	110	48172										
SIPA1L2	0	genome.wustl.edu	37	chr1	232551498	232551498	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agaacacgggcaccactgccCcctcccagagtcagtcagaa	9	16	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	232551498	232551498	C	T	SNP	SIPA1L2	ENST00000495863	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	54	0	0	49	8	14.04	-	-	-	T	232551498	C	T	232551498	1	4	550	0	1	0	0	0	0	0	0	0	14419	638	22	4		4	SIPA1L2	1	232551498	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	721148	232551498	16699123	111	48173										
SDCCAG8	0	genome.wustl.edu	37	chr1	243468085	243468085	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attgaagtttttgaggtaaaGtgaaatcgtccatttatagt	9	3	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	243468085	243468085	G	A	SNP	SDCCAG8	ENST00000496361	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.824	-	-	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	101	0	0	86	13	13.13	-	-	-	A	243468085	G	A	243468085	1	1	550	0	1	0	0	0	0	0	0	0	14047	1044	36	4		4	SDCCAG8	1	243468085	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	10916587	243468085	5782536	112	48174										
ZNF669	0	genome.wustl.edu	37	chr1	247265305	247265305	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttacctacagaagccaggttCctgcaggtttcctgcatcac	8	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	1	247265305	247265305	C	T	SNP	ZNF669	ENST00000343381	human	ensembl	69_37n	-1	known	silent	c.372	p.R124	0.990	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	80	0	0	115	77	40.1	-	-	-	T	247265305	C	T	247265305	2	4	550	1	0	0	0	0	0	0	0	1	18172	854	30	2		2	ZNF669	1	247265305	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3797220	247265305	1985316	113	48175										
KIDINS220	0	genome.wustl.edu	37	chr2	8871261	8871261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgagctataattggatcttgCaggccactcaggctatgtgg	12	9	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	8871261	8871261	C	T	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	silent	c.4905	p.L1635	0.856	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	87	0	0	123	24	16.33	-	-	-	T	8871261	C	T	8871261	2	4	550	1	0	0	0	0	0	0	0	1	8323	697	25	4		4	KIDINS220	2	8871261	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		8871261	234328112	114	48176										
KIDINS220	0	genome.wustl.edu	37	chr2	8890369	8890369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcacacggatgggggctggCtgtaccctgatggcgcccta	15	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	8890369	8890369	C	T	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.3287	p.S1096N	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	55	0	0	46	9	16.36	-	-	-	T	8890369	C	T	8890369	3	4	550	1	0	0	0	0	1	0	0	0	8323	797	28	4	2056	4	KIDINS220	2	8890369	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	19108	8890369	234309004	115	48177										
KIDINS220	0	genome.wustl.edu	37	chr2	8931196	8931196	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaagccctttaccttctaGtttcttgagtaagaaagatt	7	8	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	8931196	8931196	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	silent	c.1435	p.L479	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	331	0	0	164	41	19.9	-	-	-	A	8931196	G	A	8931196	2	1	550	1	0	0	0	0	0	0	0	1	8323	1020	36	4		4	KIDINS220	2	8931196	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	40827	8931196	234268177	116	48178										
TRIB2	0	genome.wustl.edu	37	chr2	12880838	12880838	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agattttagcgtctcgaattCagcatatggtgctaaggaag	11	6	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	12880838	12880838	C	T	SNP	TRIB2	ENST00000155926	human	ensembl	69_37n	1	known	missense	c.950	p.S317L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575	100	0	0	98	12	10.91	-	-	-	T	12880838	C	T	12880838	3	4	550	1	0	0	0	0	1	0	0	0	16579	838	29	2	960	2	TRIB2	2	12880838	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3949642	12880838	230318535	117	48179										
PUM2	0	genome.wustl.edu	37	chr2	20508302	20508302	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtattggggcccaagcgctCaactacttcagttggagagg	13	9	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	20508302	20508302	C	T	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.562	p.E188K	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	196	0	0	227	33	12.69	-	-	-	T	20508302	C	T	20508302	3	4	550	1	0	0	0	0	1	0	0	0	12909	835	29	2	2696	2	PUM2	2	20508302	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7627464	20508302	222691071	118	48180										
C2orf18	0	genome.wustl.edu	37	chr2	26998495	26998495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtggtcgtgggcctggctgaCctcctgagcaagcacgacag	15	12	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	26998495	26998495	C	T	SNP	C2orf18	ENST00000344420	human	ensembl	69_37n	1	known	silent	c.486	p.D162	1.000	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UCP036436	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436	-	no_errors	C2orf18	HGNC	ENSG00000213699	18	0	0	8	6	42.86	-	-	-	T	26998495	C	T	26998495	2	4	550	1	0	0	0	0	0	0	0	1	2178	506	18	4		4	C2orf18	2	26998495	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6490193	26998495	216200878	119	48181										
C2orf16	0	genome.wustl.edu	37	chr2	27802520	27802520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggggccagcttcctgtcctGgtaaagtcagagtcttccct	12	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	27802520	27802520	G	A	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	silent	c.3081	p.L1027	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	166	0	0	140	17	10.83	-	-	-	A	27802520	G	A	27802520	2	1	550	1	0	0	0	0	0	0	0	1	2177	1335	47	4		4	C2orf16	2	27802520	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	804025	27802520	215396853	120	48182										
C2orf71	0	genome.wustl.edu	37	chr2	29296750	29296750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcatctccagaaaagtctgcCccttgtgatccatgggaacc	8	13	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	29296750	29296750	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.378	p.G126	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	138	0	0	148	20	11.9	-	-	-	T	29296750	C	T	29296750	2	4	550	1	0	0	0	0	0	0	0	1	2211	610	22	4		4	C2orf71	2	29296750	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1494230	29296750	213902623	121	48183										
ALK	0	genome.wustl.edu	37	chr2	30142888	30142888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatctggaagagaaggcggGgctgggaggcgcgaattgcc	19	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	30142888	30142888	G	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.638	p.P213L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	30	0	0	27	5	15.62	-	-	-	A	30142888	G	A	30142888	3	1	550	1	0	0	0	0	1	0	0	0	525	1232	43	4	4340	4	ALK	2	30142888	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	846138	30142888	213056485	122	48184										
VIT	0	genome.wustl.edu	37	chr2	37035731	37035731	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actgaccgcctggcctgcagCaagacctgcttgaactcggc	11	15	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	37035731	37035731	C	A	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	missense	c.1506	p.S502R	1.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	56	0	0	76	16	17.39	-	-	-	A	37035731	C	A	37035731	3	1	550	1	0	0	0	0	1	0	0	0	17268	709	25	4	1685	4	VIT	2	37035731	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6892843	37035731	206163642	123	48185										
PRKD3	0	genome.wustl.edu	37	chr2	37483934	37483934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacatagatgataactcccaCtgaccacatatctagggaac	6	12	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	37483934	37483934	C	T	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	missense	c.2284	p.V762M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	265	0	0	175	25	12.5	-	-	-	T	37483934	C	T	37483934	3	4	550	1	0	0	0	0	1	0	0	0	12601	565	20	4	400	4	PRKD3	2	37483934	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	448203	37483934	205715439	124	48186										
PSME4	0	genome.wustl.edu	37	chr2	54164619	54164619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgcatggttacatcaaaagGgcacattaaaggtcgccatt	9	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	54164619	54164619	G	A	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	missense	c.604	p.P202S	1.000	NULL	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	107	0	0	97	11	10.19	-	-	-	A	54164619	G	A	54164619	3	1	550	1	0	0	0	0	1	0	0	0	12789	1232	43	4	5095	4	PSME4	2	54164619	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	16680685	54164619	189034754	125	48187										
PNPT1	0	genome.wustl.edu	37	chr2	55913567	55913567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaccgctgtgaccattactgCagtgtcacctgacttaaaca	8	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	55913567	55913567	C	T	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.235	p.A79T	0.998	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	88	0	0	94	38	28.79	-	-	-	T	55913567	C	T	55913567	3	4	550	1	0	0	0	0	1	0	0	0	12247	710	25	4	2220	4	PNPT1	2	55913567	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1748948	55913567	187285806	126	48188										
XPO1	0	genome.wustl.edu	37	chr2	61717856	61717856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctatcaagtgttcttgtactGtttgatctgtttgtgcacca	8	8	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	61717856	61717856	G	A	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1943	p.T648I	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	133	0	0	114	13	10.24	-	-	-	A	61717856	G	A	61717856	3	1	550	1	0	0	0	0	1	0	0	0	17542	1377	48	4	1308	4	XPO1	2	61717856	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5804289	61717856	181481517	127	48189										
EHBP1	0	genome.wustl.edu	37	chr2	62934391	62934391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atccaagttccagtttgtggCctcctaccaggagctcatgg	10	12	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	62934391	62934391	C	T	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.65	p.A22V	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	62	0	0	66	17	20.48	-	-	-	T	62934391	C	T	62934391	3	4	550	1	0	0	0	0	1	0	0	0	5010	739	26	4	67	4	EHBP1	2	62934391	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1216535	62934391	180264982	128	48190										
AAK1	0	genome.wustl.edu	37	chr2	69759247	69759247	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgttggtggcgcttccaaaGtcacacaggacatagtggcc	12	10	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	69759247	69759247	G	A	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.582	p.D194	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	205	0	0	210	30	12.45	-	-	-	A	69759247	G	A	69759247	2	1	550	1	0	0	0	0	0	0	0	1	16	1020	36	4		4	AAK1	2	69759247	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6824856	69759247	173440126	129	48191										
TEX261	0	genome.wustl.edu	37	chr2	71216946	71216946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatgattcaccaccactagtCctgttgagggaatgaagagt	10	8	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	71216946	71216946	C	T	SNP	TEX261	ENST00000272438	human	ensembl	69_37n	-1	known	missense	c.305	p.G102E	0.998	pfam_Transmembrane_adaptor_Erv26	pfam_Transmembrane_adaptor_Erv26	-	no_errors	TEX261	HGNC	ENSG00000144043	70	0	0	41	7	14.58	-	-	-	T	71216946	C	T	71216946	3	4	550	1	0	0	0	0	1	0	0	0	15877	869	30	2	297	2	TEX261	2	71216946	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1457699	71216946	171982427	130	48192										
DYSF	0	genome.wustl.edu	37	chr2	71753454	71753454	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacttctgcctgaaggtcttCcgggccgaggacttgccgca	12	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	71753454	71753454	C	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.1251	p.F417	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	60	0	0	115	71	38.17	-	-	-	T	71753454	C	T	71753454	2	4	550	1	0	0	0	0	0	0	0	1	4894	854	30	2		2	DYSF	2	71753454	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	536508	71753454	171445919	131	48193										
SMYD5	0	genome.wustl.edu	37	chr2	73452545	73452545	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctgaggccaaccagtctcCtctgtctcaggcacaggctg	11	15	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	73452545	73452545	C	T	SNP	SMYD5	ENST00000486518	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMYD5	HGNC	ENSG00000135632	45	0	0	32	6	15.79	-	-	-	T	73452545	C	T	73452545	1	4	550	0	1	0	0	0	0	0	0	0	14914	696	24	4		4	SMYD5	2	73452545	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1699091	73452545	169746828	132	48194										
ALMS1	0	genome.wustl.edu	37	chr2	73679937	73679938	+	Frame_Shift_Del	DEL	TA	TA	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagtatctctctctagttctTattttcacagagagaaatcg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	73679937	73679938	TA	-	DEL	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	frame_shift_del	c.6280_6281	p.Y2094fs	0.218:0.046	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	109	0	0	90	12	11.54	-	-	-	-	73679938	TA	-	73679937	7	5	550	1	0	1	0	1	0	0	0	0	535	1754	61	0	6310	0	ALMS1	2	73679937	Frame_Shift_Del	DEL	TA	TCGA-BH-A0HF-01A-11W-A071-09	227392	73679937	169519436	133	48195										
TET3	0	genome.wustl.edu	37	chr2	74328503	74328503	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cggccttggctgggcccagcCtgactgagaagccgtgggcg	17	13	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	74328503	74328503	C	T	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	silent	c.4183	p.L1395	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	45	0	0	47	12	20.34	-	-	-	T	74328503	C	T	74328503	2	4	550	1	0	0	0	0	0	0	0	1	15866	680	24	4		4	TET3	2	74328503	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	648566	74328503	168870870	134	48196										
DCTN1	0	genome.wustl.edu	37	chr2	74593696	74593696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agctgccacctcctgcagcaCagccacgacccacgtcaagt	8	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	74593696	74593696	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	69_37n	-1	known	missense	c.2518	p.V840M	1.000	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843	298	0	0	159	32	16.75	-	-	-	T	74593696	C	T	74593696	3	4	550	1	0	0	0	0	1	0	0	0	4337	478	17	4	1362	4	DCTN1	2	74593696	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	265193	74593696	168605677	135	48197										
SEMA4F	0	genome.wustl.edu	37	chr2	74903023	74903023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgagtgtgtggcccatgccGgggagcaccgagggtgagtg	19	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	74903023	74903023	G	C	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.1630	p.G544R	0.161	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	96	0	0	80	9	10.11	-	-	-	C	74903023	G	C	74903023	3	2	550	1	0	0	0	0	1	0	0	0	14123	1116	39	3	1676	3	SEMA4F	2	74903023	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	309327	74903023	168296350	136	48198										
LRRTM4	0	genome.wustl.edu	37	chr2	77746143	77746143	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttggtgagcttgttggaatcCaaattcaatttttgtaaatt	8	4	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	77746143	77746143	C	T	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	silent	c.855	p.L285	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	58	0	0	48	8	14.29	-	-	-	T	77746143	C	T	77746143	2	4	550	1	0	0	0	0	0	0	0	1	9108	593	21	4		4	LRRTM4	2	77746143	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2843120	77746143	165453230	137	48199										
CAPG	0	genome.wustl.edu	37	chr2	85629046	85629046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacccgccacacatgcaggcCtggatcctgcactgagcctg	10	17	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	85629046	85629046	C	T	SNP	CAPG	ENST00000263867	human	ensembl	69_37n	-1	known	missense	c.58	p.G20S	0.988	smart_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	CAPG	HGNC	ENSG00000042493	73	0	0	54	6	10	-	-	-	T	85629046	C	T	85629046	3	4	550	1	0	0	0	0	1	0	0	0	2646	681	24	4	1020	4	CAPG	2	85629046	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7882903	85629046	157570327	138	48200										
ACTR1B	0	genome.wustl.edu	37	chr2	98273951	98273951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggcaagcttcttcacttcaCtgagtaatcggtctccgaag	10	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	98273951	98273951	C	T	SNP	ACTR1B	ENST00000289228	human	ensembl	69_37n	-1	known	missense	c.947	p.S316N	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1B	HGNC	ENSG00000115073	69	0	0	67	20	22.99	-	-	-	T	98273951	C	T	98273951	3	4	550	1	0	0	0	0	1	0	0	0	210	565	20	4	195	4	ACTR1B	2	98273951	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	12644905	98273951	144925422	139	48201										
EIF5B	0	genome.wustl.edu	37	chr2	100006766	100006766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctctgcacatactggtgatGgcatgggaagtctgatctac	11	10	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	100006766	100006766	G	A	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	missense	c.2488	p.G830S	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	386	0	0	542	78	12.56	-	-	-	A	100006766	G	A	100006766	3	1	550	1	0	0	0	0	1	0	0	0	5081	1348	47	4	2550	4	EIF5B	2	100006766	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1732815	100006766	143192607	140	48202										
REV1	0	genome.wustl.edu	37	chr2	100029360	100029360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtcatatactgcaagtctcCacaagttttaattcccaaag	6	10	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	100029360	100029360	C	T	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	missense	c.2005	p.G669R	1.000	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	115	0	0	95	40	29.63	-	-	-	T	100029360	C	T	100029360	3	4	550	1	0	0	0	0	1	0	0	0	13322	603	21	4	1794	4	REV1	2	100029360	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	22594	100029360	143170013	141	48203										
C2orf49	0	genome.wustl.edu	37	chr2	105959334	105959334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtagatgggttaaggaaaaGacccctcatcgtatttgatg	11	6	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	105959334	105959334	G	A	SNP	C2orf49	ENST00000258457	human	ensembl	69_37n	1	known	missense	c.296	p.R99K	1.000	NULL	NULL	-	no_errors	C2orf49	HGNC	ENSG00000135974	170	0	0	188	39	17.18	-	-	-	A	105959334	G	A	105959334	3	1	550	1	0	0	0	0	1	0	0	0	2191	942	33	2	306	2	C2orf49	2	105959334	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5929974	105959334	137240039	142	48204										
EDAR	0	genome.wustl.edu	37	chr2	109513613	109513613	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttttcacaacagccttctcaGagttgtacgtggagctgagc	10	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	109513613	109513613	G	A	SNP	EDAR	ENST00000376651	human	ensembl	69_37n	-1	known	missense	c.1193	p.S398F	0.998	superfamily_DEATH-like	pfam_Death,superfamily_DEATH-like	-	no_errors	EDAR	HGNC	ENSG00000135960	91	0	0	57	12	17.39	-	-	-	A	109513613	G	A	109513613	3	1	550	1	0	0	0	0	1	0	0	0	4940	942	33	2	253	2	EDAR	2	109513613	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3554279	109513613	133685760	143	48205										
TMEM87B	0	genome.wustl.edu	37	chr2	112838991	112838991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcctgttattggaaagataTattaagaatccagttctgga	9	5	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	112838991	112838991	T	C	SNP	TMEM87B	ENST00000283206	human	ensembl	69_37n	1	known	missense	c.734	p.I245T	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214	348	0	0	237	76	24.2	-	-	-	C	112838991	T	C	112838991	3	2	550	1	0	0	0	0	1	0	0	0	16306	1406	49	5	764	5	TMEM87B	2	112838991	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	3325378	112838991	130360382	144	48206										
FBLN7	0	genome.wustl.edu	37	chr2	112917318	112917318	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagcagctgctgaagggccaGgagacacgcttcgccgaggg	16	12	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	112917318	112917318	G	A	SNP	FBLN7	ENST00000331203	human	ensembl	69_37n	1	known	silent	c.141	p.Q47	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152	23	0	0	51	10	16.39	-	-	-	A	112917318	G	A	112917318	2	1	550	1	0	0	0	0	0	0	0	1	5747	991	35	4		4	FBLN7	2	112917318	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	78327	112917318	130282055	145	48207										
SLC20A1	0	genome.wustl.edu	37	chr2	113404598	113404598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccctgaagcaagcctgcatcCtagctagcatctttgaaaca	7	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	113404598	113404598	C	T	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	silent	c.193	p.L65	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	77	0	0	51	11	17.74	-	-	-	T	113404598	C	T	113404598	2	4	550	1	0	0	0	0	0	0	0	1	14527	680	24	4		4	SLC20A1	2	113404598	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	487280	113404598	129794775	146	48208										
SLC20A1	0	genome.wustl.edu	37	chr2	113404674	113404674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaccatccggaagggcttgaTtgacgtggagatgtacaact	12	8	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	113404674	113404674	T	C	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	missense	c.269	p.I90T	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	86	0	0	48	25	34.25	-	-	-	C	113404674	T	C	113404674	3	2	550	1	0	0	0	0	1	0	0	0	14527	1493	52	5	271	5	SLC20A1	2	113404674	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	76	113404674	129794699	147	48209										
GLI2	0	genome.wustl.edu	37	chr2	121747900	121747900	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggagctgccaggtcatgcgGtcccagccaccacagccaca	12	16	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	121747900	121747900	G	C	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	silent	c.4410	p.R1470	0.244	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	58	0	0	13	4	23.53	-	-	-	C	121747900	G	C	121747900	2	2	550	1	0	0	0	0	0	0	0	1	6490	1248	44	4		4	GLI2	2	121747900	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8343226	121747900	121451473	148	48210										
CLASP1	0	genome.wustl.edu	37	chr2	122161961	122161961	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttaccttgctatgagggtCagcaaacatccgagtgaaga	10	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	122161961	122161961	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	missense	c.2719	p.D907N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	54	0	0	34	8	19.05	-	-	-	T	122161961	C	T	122161961	3	4	550	1	0	0	0	0	1	0	0	0	3484	826	29	2	1953	2	CLASP1	2	122161961	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	414061	122161961	121037412	149	48211										
ERCC3	0	genome.wustl.edu	37	chr2	128050294	128050294	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgacagctgcatacaaggaGtaggcagttagtttgtactc	11	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	128050294	128050294	G	A	SNP	ERCC3	ENST00000285398	human	ensembl	69_37n	-1	known	silent	c.363	p.Y121	0.999	tigrfam_XPGB_DNA_repair	pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	-	no_errors	ERCC3	HGNC	ENSG00000163161	83	0	0	71	12	14.29	-	-	-	A	128050294	G	A	128050294	2	1	550	1	0	0	0	0	0	0	0	1	5251	1024	36	4		4	ERCC3	2	128050294	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5888333	128050294	115149079	150	48212										
SMPD4	0	genome.wustl.edu	37	chr2	130934150	130934150	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagaaagctgggctgctgcaGgtgagggaacgccatagcag	16	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	130934150	130934150	G	A	SNP	SMPD4	ENST00000409031	human	ensembl	69_37n	-1	known	silent	c.133	p.L45	0.989	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699	52	0	0	49	23	31.94	-	-	-	A	130934150	G	A	130934150	2	1	550	1	0	0	0	0	0	0	0	1	14896	991	35	4		4	SMPD4	2	130934150	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2883856	130934150	112265223	151	48213										
R3HDM1	0	genome.wustl.edu	37	chr2	136362426	136362426	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accttttctaatgaggatgtCtgatactgttactgtaaaag	8	6	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	136362426	136362426	C	T	SNP	R3HDM1	ENST00000264160	human	ensembl	69_37n	1	known	missense	c.11	p.S4F	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	71	0	0	115	24	17.27	-	-	-	T	136362426	C	T	136362426	3	4	550	1	0	0	0	0	1	0	0	0	12970	913	32	2	13	2	R3HDM1	2	136362426	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5428276	136362426	106836947	152	48214										
LCT	0	genome.wustl.edu	37	chr2	136566076	136566076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcagtatcctccgtgttcgGattggtcagccccactccgt	9	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	136566076	136566076	G	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.3841	p.P1281S	0.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	166	0	0	115	99	46.26	-	-	-	A	136566076	G	A	136566076	3	1	550	1	0	0	0	0	1	0	0	0	8747	1174	41	2	1982	2	LCT	2	136566076	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	203650	136566076	106633297	153	48215										
THSD7B	0	genome.wustl.edu	37	chr2	137988705	137988705	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgaatggactgtgtgctgagCgagtggacggagtggtcatc	17	7	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	137988705	137988705	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	silent	c.1815	p.S605	0.013	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	62	0	0	73	18	19.78	-	-	-	T	137988705	C	T	137988705	2	4	550	1	0	0	0	0	0	0	0	1	15975	767	27	1		1	THSD7B	2	137988705	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1422629	137988705	105210668	154	48216										
HNMT	0	genome.wustl.edu	37	chr2	138722143	138722143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtttctcaaccattccacgGaacaccagtgcatgcaggaa	9	12	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	138722143	138722143	G	A	SNP	HNMT	ENST00000280097	human	ensembl	69_37n	1	known	missense	c.82	p.E28K	1.000	pirsf_Histamine_N-methyltransferase	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	-	no_errors	HNMT	HGNC	ENSG00000150540	412	0	0	413	129	23.76	-	-	-	A	138722143	G	A	138722143	3	1	550	1	0	0	0	0	1	0	0	0	7306	1175	41	2	84	2	HNMT	2	138722143	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	733438	138722143	104477230	155	48217										
ACVR2A	0	genome.wustl.edu	37	chr2	148672803	148672803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccattactaggtttgaaacCactgcagttattagaagtga	8	7	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	148672803	148672803	C	T	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.572	p.P191L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	353	0	0	208	36	14.75	-	-	-	T	148672803	C	T	148672803	3	4	550	1	0	0	0	0	1	0	0	0	223	594	21	4	590	4	ACVR2A	2	148672803	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	9950660	148672803	94526570	156	48218										
MBD5	0	genome.wustl.edu	37	chr2	149240919	149240919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgaaccccagcctcctcaGttctctacctatctctttgc	4	17	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	149240919	149240919	G	A	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	missense	c.2759	p.S920N	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	374	0	0	385	74	16.12	-	-	-	A	149240919	G	A	149240919	3	1	550	1	0	0	0	0	1	0	0	0	9418	1029	36	4	2777	4	MBD5	2	149240919	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	568116	149240919	93958454	157	48219										
NEB	0	genome.wustl.edu	37	chr2	152466467	152466467	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaagatgcttaacatgtcCactgggctagagaacttggt	11	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	152466467	152466467	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.12186	p.V4062	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	188	0	0	140	30	17.65	-	-	-	T	152466467	C	T	152466467	2	4	550	1	0	0	0	0	0	0	0	1	10374	581	21	4		4	NEB	2	152466467	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3225548	152466467	90732906	158	48220										
NEB	0	genome.wustl.edu	37	chr2	152483696	152483696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagccaatgcctctcagccaCtggagatcagatttgtaaat	8	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	152483696	152483696	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.10167	p.Q3389	0.999	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	204	0	0	140	25	15.15	-	-	-	T	152483696	C	T	152483696	2	4	550	1	0	0	0	0	0	0	0	1	10374	564	20	4		4	NEB	2	152483696	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	17229	152483696	90715677	159	48221										
GALNT5	0	genome.wustl.edu	37	chr2	158140917	158140917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcaatcgctctcctccacaCctcatcaaggagattctgct	5	15	5	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	158140917	158140917	C	T	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	silent	c.1578	p.H526	0.996	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	125	0	0	61	8	11.59	-	-	-	T	158140917	C	T	158140917	2	4	550	1	0	0	0	0	0	0	0	1	6266	506	18	4		4	GALNT5	2	158140917	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5657221	158140917	85058456	160	48222										
PLA2R1	0	genome.wustl.edu	37	chr2	160884755	160884755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttcatgatcaatgtggtttAgatattttttacatatatat	5	3	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	160884755	160884755	A	G	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.1073	p.L358P	0.999	superfamily_C-type_lectin_fold	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	329	0	0	263	32	10.77	-	-	-	G	160884755	A	G	160884755	3	3	550	1	0	0	0	0	1	0	0	0	12084	420	15	5	3426	5	PLA2R1	2	160884755	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	2743838	160884755	82314618	161	48223										
SCN3A	0	genome.wustl.edu	37	chr2	165984479	165984479	+	Nonsense_Mutation	SNP	T	T	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acactcccgcatcttattttTcacataatcaattccctttt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	165984479	165984479	T	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	nonsense	c.3055	p.K1019*	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	150	0	0	107	29	21.32	-	-	-	A	165984479	T	A	165984479	4	1	550	1	0	0	0	0	0	1	0	0	14006	1792	62	5	2991	5	SCN3A	2	165984479	Nonsense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	5099724	165984479	77214894	162	48224	392	3								
SCN3A	0	genome.wustl.edu	37	chr2	165984480	165984480	+	Silent	SNP	C	C	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cactcccgcatcttatttttCacataatcaattcccttttg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	165984480	165984480	C	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	silent	c.3054	p.V1018	0.999	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	150	0	0	106	28	20.9	-	-	-	A	165984480	C	A	165984480	2	1	550	1	0	0	0	0	0	0	0	1	14006	813	29	2		2	SCN3A	2	165984480	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1	165984480	77214893	163	48225	392	3								
SCN3A	0	genome.wustl.edu	37	chr2	165984482	165984482	+	Missense_Mutation	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcccgcatcttatttttcaCataatcaattcccttttgca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	165984482	165984482	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.3052	p.V1018M	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	149	0	0	105	27	20.45	-	-	-	T	165984482	C	T	165984482	3	4	550	1	0	0	0	0	1	0	0	0	14006	478	17	4	2994	4	SCN3A	2	165984482	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2	165984482	77214891	164	48226	392	3								
KLHL23	0	genome.wustl.edu	37	chr2	170592607	170592607	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgctcaatgccaggtattaCcactgtgcagtcaccttggg	10	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	170592607	170592607	C	T	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	1	known	silent	c.1083	p.Y361	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	134	0	0	199	56	21.96	-	-	-	T	170592607	C	T	170592607	2	4	550	1	0	0	0	0	0	0	0	1	8431	518	18	4		4	KLHL23	2	170592607	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4608125	170592607	72606766	165	48227										
CDCA7	0	genome.wustl.edu	37	chr2	174223538	174223538	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgatgacagttgtgacagCtttgcttctgataattttgc	9	7	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	174223538	174223538	C	T	SNP	CDCA7	ENST00000306721	human	ensembl	69_37n	1	known	silent	c.120	p.S40	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	77	0	0	82	17	17.17	-	-	-	T	174223538	C	T	174223538	2	4	550	1	0	0	0	0	0	0	0	1	3119	796	28	4		4	CDCA7	2	174223538	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3630931	174223538	68975835	166	48228										
SP3	0	genome.wustl.edu	37	chr2	174820216	174820217	+	Frame_Shift_Ins	INS	-	-	AA													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atacctgtactatctatcgtINSaacaggcaactgtgatgaag							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	174820216	174820217	-	AA	INS	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1024_1023	p.T341fs	1.000:1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	183	0	0	164	41	20	-	-	-	AA	174820217	-	AA	174820216	7	5	550	1	0	1	1	0	0	0	0	0	15054	1638	57	0	1337	0	SP3	2	174820216	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	596678	174820216	68379157	167	48229										
TTC30B	0	genome.wustl.edu	37	chr2	178416909	178416909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgctgtaataggccaaagCcaggttgtaggaaaggtcag	14	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	178416909	178416909	C	T	SNP	TTC30B	ENST00000408939	human	ensembl	69_37n	-1	known	missense	c.583	p.A195T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659	122	0	0	138	29	17.26	-	-	-	T	178416909	C	T	178416909	3	4	550	1	0	0	0	0	1	0	0	0	16796	739	26	4	1418	4	TTC30B	2	178416909	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3596693	178416909	64782464	168	48230										
TTN	0	genome.wustl.edu	37	chr2	179418386	179418387	+	Frame_Shift_Del	DEL	AG	AG	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctcctttggtagagacagtAgtccattcctcttcctctcc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179418386	179418387	AG	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.81642_81641	p.T27214fs	0.241:0.976	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	228	0	0	118	22	15.6	-	-	-	-	179418387	AG	-	179418386	7	5	550	1	0	1	0	1	0	0	0	0	16832	407	15	0	18749	0	TTN	2	179418386	Frame_Shift_Del	DEL	AG	TCGA-BH-A0HF-01A-11W-A071-09	1001477	179418386	63780987	169	48231	393	3								
TTN	0	genome.wustl.edu	37	chr2	179418394	179418394	+	Frame_Shift_Del	DEL	C	C	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtagagacagtagtccattCctcttcctctccttgtctta							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179418394	179418394	C	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.81634	p.E27212fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	219	0	0	113	20	15.04	-	-	-	-	179418394	C	-	179418394	7	5	550	1	0	1	0	1	0	0	0	0	16832	864	30	0	18757	0	TTN	2	179418394	Frame_Shift_Del	DEL	C	TCGA-BH-A0HF-01A-11W-A071-09	8	179418394	63780979	170	48232	393	3								
TTN	0	genome.wustl.edu	37	chr2	179418395	179418395	+	Missense_Mutation	SNP	C	C	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtagagacagtagtccattcCtcttcctctccttgtcttat							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179418395	179418395	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.81633	p.E27211D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	224	0	0	121	20	14.18	-	-	-	A	179418395	C	A	179418395	3	1	550	1	0	0	0	0	1	0	0	0	16832	680	24	4	18758	4	TTN	2	179418395	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1	179418395	63780978	171	48233	393	3								
TTN	0	genome.wustl.edu	37	chr2	179441423	179441423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgctctcacccatcgcaggCttttcttttctctcctttct	4	15	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179441423	179441423	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.61844	p.S20615N	0.984	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	378	0	0	243	119	32.87	-	-	-	T	179441423	C	T	179441423	3	4	550	1	0	0	0	0	1	0	0	0	16832	797	28	4	38583	4	TTN	2	179441423	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	23028	179441423	63757950	172	48234										
TTN	0	genome.wustl.edu	37	chr2	179478803	179478803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgatatttggctgttattgGagaggcctgaactggttcac	12	7	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179478803	179478803	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41617	p.P13873S	0.990	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	175	0	0	114	31	21.38	-	-	-	A	179478803	G	A	179478803	3	1	550	1	0	0	0	0	1	0	0	0	16832	1174	41	2	58776	2	TTN	2	179478803	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	37380	179478803	63720570	173	48235										
TTN	0	genome.wustl.edu	37	chr2	179654086	179654086	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttggaacaacaatagtcaCctttccatgggtaacttgga	8	9	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	179654086	179654086	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	splice_site	c.2076+1	e12+1	1.000	-	-	-	no_errors	TTN	HGNC	ENSG00000155657	181	0	0	112	14	11.11	-	-	-	T	179654086	C	T	179654086	5	4	550	1	0	0	0	0	0	0	1	0	16832	521	18	4	109311	4	TTN	2	179654086	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	175283	179654086	63545287	174	48236										
AOX1	0	genome.wustl.edu	37	chr2	201462212	201462212	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cataggaagcacccacaccaGaattcatcctgttcaggtga	8	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	201462212	201462212	G	C	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	1	known	missense	c.293	p.R98T	0.989	pfam_2Fe-2S-bd,superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	127	0	0	74	13	14.94	-	-	-	C	201462212	G	C	201462212	3	2	550	1	0	0	0	0	1	0	0	0	730	942	33	2	307	2	AOX1	2	201462212	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	21808126	201462212	41737161	175	48237										
ICA1L	0	genome.wustl.edu	37	chr2	203676513	203676513	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctcatcagacaaaactagcCtgaagtaaaaacaaaaaaaa	4	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	203676513	203676513	C	T	SNP	ICA1L	ENST00000358299	human	ensembl	69_37n	-1	known	splice_site	c.867-1	e8-1	1.000	-	-	-	no_errors	ICA1L	HGNC	ENSG00000163596	359	0	0	273	33	10.78	-	-	-	T	203676513	C	T	203676513	5	4	550	1	0	0	0	0	0	0	1	0	7532	695	24	4	602	4	ICA1L	2	203676513	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2214301	203676513	39522860	176	48238										
NRP2	0	genome.wustl.edu	37	chr2	206659746	206659746	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatggccttaagcacaaggtCaagatgaaccaccaaaagtg	10	9	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	206659746	206659746	C	T	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	silent	c.2760	p.V920	1.000	pirsf_Neuropilin,pfam_Neuropilin1_C	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	49	0	0	38	25	39.68	-	-	-	T	206659746	C	T	206659746	2	4	550	1	0	0	0	0	0	0	0	1	10734	813	29	2		2	NRP2	2	206659746	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2983233	206659746	36539627	177	48239										
PTH2R	0	genome.wustl.edu	37	chr2	209345889	209345889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgacacaaggaagcaatacaGgtaatttcaggagaggcatc	11	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	209345889	209345889	G	A	SNP	PTH2R	ENST00000272847	human	ensembl	69_37n	1	known	missense	c.1076	p.R359K	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407	155	0	0	138	30	17.86	-	-	-	A	209345889	G	A	209345889	3	1	550	1	0	0	0	0	1	0	0	0	12841	1014	35	4	1114	4	PTH2R	2	209345889	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2686143	209345889	33853484	178	48240										
FN1	0	genome.wustl.edu	37	chr2	216298144	216298144	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcataagtgtcacccactcgGtaagtgttcccagtgtactt	8	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	216298144	216298144	G	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	silent	c.318	p.Y106	1.000	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	63	0	0	59	12	16.9	-	-	-	A	216298144	G	A	216298144	2	1	550	1	0	0	0	0	0	0	0	1	6008	1256	44	4		4	FN1	2	216298144	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6952255	216298144	26901229	179	48241										
TNS1	0	genome.wustl.edu	37	chr2	218713705	218713705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggggtggccgacagtgtaGgacgtgtggcattaacagcc	17	8	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	218713705	218713705	G	T	SNP	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	missense	c.1160	p.P387H	0.077	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	101	0	0	122	99	44.39	-	-	-	T	218713705	G	T	218713705	3	4	550	1	0	0	0	0	1	0	0	0	16438	1000	35	4	4115	4	TNS1	2	218713705	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2415561	218713705	24485668	180	48242										
SLC11A1	0	genome.wustl.edu	37	chr2	219254746	219254746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctaccagaaaaccaaccagGctgcggtgagacacactttc	8	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	219254746	219254746	G	T	SNP	SLC11A1	ENST00000233202	human	ensembl	69_37n	1	known	missense	c.949	p.A317S	0.998	pfam_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	pfam_Nat-R-assoc-macro_Nramp,prints_Nat-R-assoc-macro_Nramp,tigrfam_Nat-R-assoc-macro_Nramp	-	no_errors	SLC11A1	HGNC	ENSG00000018280	54	0	0	83	12	12.63	-	-	-	T	219254746	G	T	219254746	3	4	550	1	0	0	0	0	1	0	0	0	14469	1203	42	4	983	4	SLC11A1	2	219254746	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	541041	219254746	23944627	181	48243										
VIL1	0	genome.wustl.edu	37	chr2	219313999	219313999	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttgggatgactccagctgcCttctctgctctgcctcgatg	10	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	219313999	219313999	C	T	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	silent	c.2424	p.A808	0.985	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	405	0	0	336	41	10.88	-	-	-	T	219313999	C	T	219313999	2	4	550	1	0	0	0	0	0	0	0	1	17261	668	24	4		4	VIL1	2	219313999	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	59253	219313999	23885374	182	48244										
STK36	0	genome.wustl.edu	37	chr2	219557367	219557367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatatacctggagccatttcCtctgccctggcagccatatg	9	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	219557367	219557367	C	T	SNP	STK36	ENST00000295709	human	ensembl	69_37n	1	known	silent	c.1977	p.S659	0.017	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK36	HGNC	ENSG00000163482	38	0	0	39	21	35	-	-	-	T	219557367	C	T	219557367	2	4	550	1	0	0	0	0	0	0	0	1	15393	668	24	4		4	STK36	2	219557367	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	243368	219557367	23642006	183	48245										
TTLL4	0	genome.wustl.edu	37	chr2	219611889	219611889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcgcaaagcgtgggagagcaGcagccgccaaaagtggattg	16	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	219611889	219611889	G	A	SNP	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	missense	c.2138	p.S713N	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	114	0	0	107	27	20	-	-	-	A	219611889	G	A	219611889	3	1	550	1	0	0	0	0	1	0	0	0	16826	971	34	4	2164	4	TTLL4	2	219611889	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	54522	219611889	23587484	184	48246										
PTPRN	0	genome.wustl.edu	37	chr2	220161010	220161010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcggtcacactgcttgacacCatcctccaccagcggggtca	10	16	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	220161010	220161010	C	T	SNP	PTPRN	ENST00000295718	human	ensembl	69_37n	-1	known	missense	c.2446	p.G816S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356	175	0	0	92	45	32.61	-	-	-	T	220161010	C	T	220161010	3	4	550	1	0	0	0	0	1	0	0	0	12890	594	21	4	517	4	PTPRN	2	220161010	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	549121	220161010	23038363	185	48247										
WDFY1	0	genome.wustl.edu	37	chr2	224746709	224746709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcacaaacccggacttggaaCtcgaagcccatgactgggta	10	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	224746709	224746709	C	T	SNP	WDFY1	ENST00000233055	human	ensembl	69_37n	-1	known	silent	c.1014	p.E338	1.000	pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449	365	0	0	390	86	18.03	-	-	-	T	224746709	C	T	224746709	2	4	550	1	0	0	0	0	0	0	0	1	17365	564	20	4		4	WDFY1	2	224746709	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4585699	224746709	18452664	186	48248										
CAB39	0	genome.wustl.edu	37	chr2	231624720	231624720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctgccgctgccgtcatgCcgttcccgtttgggaagtct	11	16	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	231624720	231624720	C	T	SNP	CAB39	ENST00000258418	human	ensembl	69_37n	1	known	missense	c.4	p.P2S	1.000	pfam_Mo25	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39	HGNC	ENSG00000135932	82	0	0	64	11	14.47	-	-	-	T	231624720	C	T	231624720	3	4	550	1	0	0	0	0	1	0	0	0	2550	739	26	4	6	4	CAB39	2	231624720	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6878011	231624720	11574653	187	48249										
CAB39	0	genome.wustl.edu	37	chr2	231624758	231624758	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctcacaaatctccagcagaCattgtgaagaatctgaagga	8	9	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	231624758	231624758	C	T	SNP	CAB39	ENST00000258418	human	ensembl	69_37n	1	known	silent	c.42	p.D14	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39	HGNC	ENSG00000135932	109	0	0	97	16	14.16	-	-	-	T	231624758	C	T	231624758	2	4	550	1	0	0	0	0	0	0	0	1	2550	477	17	4		4	CAB39	2	231624758	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	38	231624758	11574615	188	48250										
HJURP	0	genome.wustl.edu	37	chr2	234750354	234750354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgttgacttcaagaaaagCtttttccaattttaaacctg	5	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	234750354	234750354	C	T	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.1072	p.A358T	0.002	pfam_HJURP	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	115	0	0	173	24	12.12	-	-	-	T	234750354	C	T	234750354	3	4	550	1	0	0	0	0	1	0	0	0	7240	797	28	4	1182	4	HJURP	2	234750354	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3125596	234750354	8449019	189	48251										
SPP2	0	genome.wustl.edu	37	chr2	234959515	234959515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgaactactggtcttgctcaGgtaaggtattcaccaacctg	9	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	234959515	234959515	G	A	SNP	SPP2	ENST00000168148	human	ensembl	69_37n	1	known	missense	c.85	p.G29S	1.000	NULL	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080	265	0	0	149	18	10.78	-	-	-	A	234959515	G	A	234959515	3	1	550	1	0	0	0	0	1	0	0	0	15178	1014	35	4	87	4	SPP2	2	234959515	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	209161	234959515	8239858	190	48252										
SH3BP4	0	genome.wustl.edu	37	chr2	235951291	235951291	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccgggcaaaggaggtttctCaagaagaacgaagtcgggaa	14	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	235951291	235951291	C	T	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	silent	c.1878	p.L626	0.997	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	96	0	0	100	25	20	-	-	-	T	235951291	C	T	235951291	2	4	550	1	0	0	0	0	0	0	0	1	14334	813	29	2		2	SH3BP4	2	235951291	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	991776	235951291	7248082	191	48253										
ASB18	0	genome.wustl.edu	37	chr2	237172897	237172897	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcagattaaatccctcactCtctcctcatctttggcatcc	4	15	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	237172897	237172897	C	T	SNP	ASB18	ENST00000409749	human	ensembl	69_37n	-1	known	missense	c.92	p.R31K	0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB18	HGNC	ENSG00000182177	77	0	0	58	10	14.71	-	-	-	T	237172897	C	T	237172897	3	4	550	1	0	0	0	0	1	0	0	0	1026	913	32	2	1331	2	ASB18	2	237172897	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1221606	237172897	6026476	192	48254										
PER2	0	genome.wustl.edu	37	chr2	239170881	239170881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggagattttcctgctccatgGgttgatgaagctggaccagc	13	9	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	2	239170881	239170881	G	A	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.1258	p.P420S	1.000	pfam_PAS_fold_3,pfam_PAS_fold	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	43	0	0	23	4	14.81	-	-	-	A	239170881	G	A	239170881	3	1	550	1	0	0	0	0	1	0	0	0	11803	1232	43	4	2561	4	PER2	2	239170881	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1997984	239170881	4028492	193	48255										
BRPF1	0	genome.wustl.edu	37	chr3	9787515	9787515	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtggtaaggaagagtctgggCcggggagctggctggctgtc	20	7	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	9787515	9787515	C	T	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	silent	c.3225	p.G1075	0.990	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	35	0	0	43	11	20.37	-	-	-	T	9787515	C	T	9787515	2	4	550	1	0	0	0	0	0	0	0	1	1528	726	26	4		4	BRPF1	3	9787515	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		9787515	188234915	194	48256										
CAMK1	0	genome.wustl.edu	37	chr3	9803418	9803418	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attttggagtcttcatccagGctgtagtacagcagattctc	9	9	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	9803418	9803418	G	A	SNP	CAMK1	ENST00000256460	human	ensembl	69_37n	-1	known	silent	c.453	p.S151	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1	HGNC	ENSG00000134072	68	0	0	76	13	14.44	-	-	-	A	9803418	G	A	9803418	2	1	550	1	0	0	0	0	0	0	0	1	2621	1194	42	4		4	CAMK1	3	9803418	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	15903	9803418	188219012	195	48257										
MKRN2	0	genome.wustl.edu	37	chr3	12613678	12613678	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agccgcattcctacctggatGccatcaggagtggccttgat	11	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	12613678	12613678	G	T	SNP	MKRN2	ENST00000170447	human	ensembl	69_37n	1	known	missense	c.448	p.A150S	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975	58	0	0	48	9	15.79	-	-	-	T	12613678	G	T	12613678	3	4	550	1	0	0	0	0	1	0	0	0	9678	1319	46	4	462	4	MKRN2	3	12613678	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2810260	12613678	185408752	196	48258										
NUP210	0	genome.wustl.edu	37	chr3	13399721	13399721	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgagcatagcccacactcaCcacctgcttgttctgctgca	7	17	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	13399721	13399721	C	T	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	splice_site	c.2328+1	e16+1	1.000	-	-	-	no_errors	NUP210	HGNC	ENSG00000132182	35	0	0	15	23	60.53	-	-	-	T	13399721	C	T	13399721	5	4	550	1	0	0	0	0	0	0	1	0	10833	521	18	4	3434	4	NUP210	3	13399721	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	786043	13399721	184622709	197	48259										
RARB	0	genome.wustl.edu	37	chr3	25622072	25622072	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catcgagtccgactggacctGggcctctgggacaaattcag	12	12	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	25622072	25622072	G	A	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	silent	c.666	p.L222	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	98	0	0	78	10	11.36	-	-	-	A	25622072	G	A	25622072	2	1	550	1	0	0	0	0	0	0	0	1	13136	1335	47	4		4	RARB	3	25622072	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	12222351	25622072	172400358	198	48260										
CSRNP1	0	genome.wustl.edu	37	chr3	39185506	39185506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctcacagccctccctgcaGcagccacaggggaatgctgt	10	15	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	39185506	39185506	G	A	SNP	CSRNP1	ENST00000273153	human	ensembl	69_37n	-1	known	silent	c.810	p.C270	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655	90	0	0	43	9	17.31	-	-	-	A	39185506	G	A	39185506	2	1	550	1	0	0	0	0	0	0	0	1	3995	963	34	4		4	CSRNP1	3	39185506	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13563434	39185506	158836924	199	48261										
CCDC13	0	genome.wustl.edu	37	chr3	42777325	42777325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgctgttcagttgctggtcCaggtggtgctgggacactcg	15	10	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	42777325	42777325	C	T	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	silent	c.1245	p.L415	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	103	0	0	89	19	17.59	-	-	-	T	42777325	C	T	42777325	2	4	550	1	0	0	0	0	0	0	0	1	2790	581	21	4		4	CCDC13	3	42777325	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3591819	42777325	155245105	200	48262										
ZNF445	0	genome.wustl.edu	37	chr3	44490164	44490164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catcctgatgacacagctaaGgtttctgcttcttccaaagg	8	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	44490164	44490164	G	A	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	silent	c.999	p.T333	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	92	0	0	70	45	39.13	-	-	-	A	44490164	G	A	44490164	2	1	550	1	0	0	0	0	0	0	0	1	18014	987	35	4		4	ZNF445	3	44490164	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1712839	44490164	153532266	201	48263										
SLC6A20	0	genome.wustl.edu	37	chr3	45800527	45800527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgctgaacaaaagtccccagGgccgccagggggatgcacat	13	13	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	45800527	45800527	G	A	SNP	SLC6A20	ENST00000358525	human	ensembl	69_37n	-1	known	silent	c.1722	p.A574	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A20	HGNC	ENSG00000163817	24	0	0	22	7	24.14	-	-	-	A	45800527	G	A	45800527	2	1	550	1	0	0	0	0	0	0	0	1	14773	1219	43	4		4	SLC6A20	3	45800527	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1310363	45800527	152221903	202	48264										
SLC6A20	0	genome.wustl.edu	37	chr3	45804464	45804464	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accagcacgatgagcagcagGgacagtgtggccgcgtagtc	15	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	45804464	45804464	G	A	SNP	SLC6A20	ENST00000358525	human	ensembl	69_37n	-1	known	silent	c.1404	p.S468	0.985	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A20	HGNC	ENSG00000163817	83	0	0	36	6	14.29	-	-	-	A	45804464	G	A	45804464	2	1	550	1	0	0	0	0	0	0	0	1	14773	1219	43	4		4	SLC6A20	3	45804464	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3937	45804464	152217966	203	48265										
FYCO1	0	genome.wustl.edu	37	chr3	46008714	46008714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctgacactcgccctccttGctctgtagaatggcctcctt	8	15	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	46008714	46008714	G	A	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	silent	c.2112	p.S704	1.000	superfamily_Prefoldin	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	97	0	0	99	11	10	-	-	-	A	46008714	G	A	46008714	2	1	550	1	0	0	0	0	0	0	0	1	6174	1310	46	4		4	FYCO1	3	46008714	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	204250	46008714	152013716	204	48266										
CCR3	0	genome.wustl.edu	37	chr3	46307028	46307028	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatctttttcataatcctgCtgacaatcgacaggtacctg	7	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	46307028	46307028	C	T	SNP	CCR3	ENST00000545097	human	ensembl	69_37n	1	known	silent	c.442	p.L148	0.067	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	-	no_errors	CCR3	HGNC	ENSG00000183625	287	0	0	176	37	17.37	-	-	-	T	46307028	C	T	46307028	2	4	550	1	0	0	0	0	0	0	0	1	2971	796	28	4		4	CCR3	3	46307028	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	298314	46307028	151715402	205	48267										
LTF	0	genome.wustl.edu	37	chr3	46479439	46479439	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggtctacttacgggaggttGagcactttttcagattagta	12	6	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	46479439	46479439	G	A	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	missense	c.2090	p.S697L	0.956	smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	139	0	0	126	24	15.89	-	-	-	A	46479439	G	A	46479439	3	1	550	1	0	0	0	0	1	0	0	0	9145	1294	45	2	50	2	LTF	3	46479439	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	172411	46479439	151542991	206	48268										
ZNF589	0	genome.wustl.edu	37	chr3	48310219	48310219	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctttcgtgaaaagtcagaGctcattaagcaccagagaat	10	8	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	48310219	48310219	G	C	SNP	ZNF589	ENST00000354698	human	ensembl	69_37n	1	known	missense	c.1038	p.E346D	0.096	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048	156	0	0	112	38	25.17	-	-	-	C	48310219	G	C	48310219	3	2	550	1	0	0	0	0	1	0	0	0	18117	962	34	4	1052	4	ZNF589	3	48310219	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1830780	48310219	149712211	207	48269										
WDR6	0	genome.wustl.edu	37	chr3	49049058	49049058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctctgacatggctctttgcCtctatctaggtgagggtccc	11	12	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	49049058	49049058	C	T	SNP	WDR6	ENST00000419837	human	ensembl	69_37n	1	putative	missense	c.13	p.L5F	0.958	NULL	NULL	-	no_stop_codon	WDR6	HGNC	ENSG00000178252	104	0	0	79	40	33.61	-	-	-	T	49049058	C	T	49049058	3	4	550	1	0	0	0	0	1	0	0	0	17407	696	24	4		4	WDR6	3	49049058	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	738839	49049058	148973372	208	48270										
CCDC36	0	genome.wustl.edu	37	chr3	49294420	49294420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggcagcaggaaccccgtgCtcagcctctgcatctgcagt	13	14	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	49294420	49294420	C	T	SNP	CCDC36	ENST00000296449	human	ensembl	69_37n	1	known	missense	c.1490	p.A497V	0.001	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421	289	0	0	278	44	13.66	-	-	-	T	49294420	C	T	49294420	3	4	550	1	0	0	0	0	1	0	0	0	2834	797	28	4	1516	4	CCDC36	3	49294420	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	245362	49294420	148728010	209	48271										
IP6K1	0	genome.wustl.edu	37	chr3	49764589	49764589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccgcatctgttccatgatgCtgatgaggttctccaggcca	10	13	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	49764589	49764589	C	A	SNP	IP6K1	ENST00000321599	human	ensembl	69_37n	-1	known	missense	c.1292	p.S431I	1.000	pfam_IPK	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095	32	0	0	44	6	12	-	-	-	A	49764589	C	A	49764589	3	1	550	1	0	0	0	0	1	0	0	0	7842	797	28	4	37	4	IP6K1	3	49764589	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	470169	49764589	148257841	210	48272										
MST1R	0	genome.wustl.edu	37	chr3	49940424	49940424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggctgaagctggcagccaCggctgcgtccagtgaggatg	17	10	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	49940424	49940424	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.619	p.V207M	0.981	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	21	0	0	10	9	47.37	-	-	-	T	49940424	C	T	49940424	3	4	550	1	0	0	0	0	1	0	0	0	9963	536	19	1	3663	1	MST1R	3	49940424	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	175835	49940424	148082006	211	48273										
SLC38A3	0	genome.wustl.edu	37	chr3	50257527	50257527	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgtgttttgctatgcttgGcttcttgctgatgaccatga	10	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	50257527	50257527	G	A	SNP	SLC38A3	ENST00000420502	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338	10	0	0	9	5	35.71	-	-	-	A	50257527	G	A	50257527	1	1	550	0	1	0	0	0	0	0	0	0	14694	1203	42	4		4	SLC38A3	3	50257527	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	317103	50257527	147764903	212	48274										
CACNA2D2	0	genome.wustl.edu	37	chr3	50421629	50421629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attgctctgcacactcacagCctttgtagatgtccgtaggg	10	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	50421629	50421629	C	T	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.650	p.G217D	1.000	pfam_VWA_N	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	57	0	0	116	18	13.43	-	-	-	T	50421629	C	T	50421629	3	4	550	1	0	0	0	0	1	0	0	0	2574	739	26	4	2944	4	CACNA2D2	3	50421629	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	164102	50421629	147600801	213	48275										
DNAH1	0	genome.wustl.edu	37	chr3	52430735	52430735	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcttcaacatcccctatgaGttcacggatggagatctgcg	11	11	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	52430735	52430735	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.11532	p.E3844	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	49	0	0	36	11	23.4	-	-	-	A	52430735	G	A	52430735	2	1	550	1	0	0	0	0	0	0	0	1	4633	1020	36	4		4	DNAH1	3	52430735	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2009106	52430735	145591695	214	48276										
BAP1	0	genome.wustl.edu	37	chr3	52436924	52436924	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgcacctctgatcggggcgGgccagcaacaaagccccacg	12	15	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	52436924	52436924	G	A	SNP	BAP1	ENST00000478368	human	ensembl	69_37n	-1	novel	silent	c.426	p.A142	0.000	NULL	NULL	-	no_start_codon	BAP1	HGNC	ENSG00000163930	35	0	0	30	13	30.23	-	-	-	A	52436924	G	A	52436924	2	1	550	1	0	0	0	0	0	0	0	1	1315	1247	43	4		4	BAP1	3	52436924	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6189	52436924	145585506	215	48277										
BAP1	0	genome.wustl.edu	37	chr3	52437870	52437870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagttgcccatcagcagaacCgctcaatgcccctggcttcc	8	17	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	52437870	52437870	C	T	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.1291	p.G431S	0.000	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	40	0	0	50	19	27.54	-	-	-	T	52437870	C	T	52437870	3	4	550	1	0	0	0	0	1	0	0	0	1315	652	23	1	918	1	BAP1	3	52437870	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	946	52437870	145584560	216	48278										
ITIH1	0	genome.wustl.edu	37	chr3	52814297	52814297	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgttgcagattgatgtggacAtcttcgagccccaggggatc	13	9	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	52814297	52814297	A	C	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	missense	c.586	p.I196L	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	30	0	0	22	18	45	-	-	-	C	52814297	A	C	52814297	3	2	550	1	0	0	0	0	1	0	0	0	7957	217	8	5	608	5	ITIH1	3	52814297	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	376427	52814297	145208133	217	48279										
FLNB	0	genome.wustl.edu	37	chr3	58107160	58107160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgtatgctgtagacgtgaCctacgatggacaccctgtgc	12	11	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	58107160	58107160	C	T	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.3056	p.T1019I	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	113	0	0	80	9	10.11	-	-	-	T	58107160	C	T	58107160	3	4	550	1	0	0	0	0	1	0	0	0	5980	507	18	4	3134	4	FLNB	3	58107160	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5292863	58107160	139915270	218	48280										
MAGI1	0	genome.wustl.edu	37	chr3	65425638	65425638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgctcaagctgcttcttccGtttggcttctagaaccgggt	10	12	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	65425638	65425638	G	A	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.1186	p.R396W	0.992	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	232	0	0	134	33	19.64	-	-	-	A	65425638	G	A	65425638	3	1	550	1	0	0	0	0	1	0	0	0	9261	1144	40	1	3496	1	MAGI1	3	65425638	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7318478	65425638	132596792	219	48281										
TBC1D23	0	genome.wustl.edu	37	chr3	99979974	99979974	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcttccttctcaccatcttGccggtccccgaggagccgtc	8	17	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	99979974	99979974	G	A	SNP	TBC1D23	ENST00000486274	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D23	HGNC	ENSG00000036054	18	0	0	21	18	46.15	-	-	-	A	99979974	G	A	99979974	1	1	550	0	1	0	0	0	0	0	0	0	15705	1334	46	4		4	TBC1D23	3	99979974	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	34554336	99979974	98042456	220	48282										
TBC1D23	0	genome.wustl.edu	37	chr3	100037971	100037971	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaagaggttgtaaacattcaGacttggataaacaaaccaga	8	6	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	100037971	100037971	G	A	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	silent	c.1746	p.Q582	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	173	0	0	138	32	18.82	-	-	-	A	100037971	G	A	100037971	2	1	550	1	0	0	0	0	0	0	0	1	15705	933	33	2		2	TBC1D23	3	100037971	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	57997	100037971	97984459	221	48283										
TBC1D23	0	genome.wustl.edu	37	chr3	100038017	100038017	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aacatcattttccttgtaaaGaagtaaaagaaagtggacac	7	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	100038017	100038017	G	A	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	missense	c.1792	p.E598K	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	194	0	0	154	38	19.69	-	-	-	A	100038017	G	A	100038017	3	1	550	1	0	0	0	0	1	0	0	0	15705	943	33	2	1809	2	TBC1D23	3	100038017	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	46	100038017	97984413	222	48284										
CBLB	0	genome.wustl.edu	37	chr3	105377845	105377845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacgtggggatactggaggaGggaaggcaaattctcggagg	19	5	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	105377845	105377845	G	A	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.2918	p.P973L	1.000	superfamily_UBA-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	194	0	0	176	38	17.76	-	-	-	A	105377845	G	A	105377845	3	1	550	1	0	0	0	0	1	0	0	0	2726	1000	35	4	34	4	CBLB	3	105377845	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5339828	105377845	92644585	223	48285										
MYH15	0	genome.wustl.edu	37	chr3	108156539	108156539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctctcctgctcaagggcaCcctcaagctgacaaaaggaa	8	13	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	108156539	108156539	C	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.3143	p.G1048D	0.999	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	291	0	0	254	51	16.67	-	-	-	T	108156539	C	T	108156539	3	4	550	1	0	0	0	0	1	0	0	0	10106	507	18	4	2765	4	MYH15	3	108156539	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2778694	108156539	89865891	224	48286										
PLCXD2	0	genome.wustl.edu	37	chr3	111426888	111426888	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgaagaagctaatgaagaaGtggtctgtgactcagaacct	12	6	2	6			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	111426888	111426888	G	A	SNP	PLCXD2	ENST00000477665	human	ensembl	69_37n	1	known	silent	c.279	p.K93	0.965	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891	162	0	0	146	29	16.57	-	-	-	A	111426888	G	A	111426888	2	1	550	1	0	0	0	0	0	0	0	1	12116	1020	36	4		4	PLCXD2	3	111426888	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3270349	111426888	86595542	225	48287										
DTX3L	0	genome.wustl.edu	37	chr3	122284843	122284843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttcactgacacaatcacaaGcagaaacaccgtctggtgat	7	12	3	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	122284843	122284843	G	A	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	missense	c.325	p.A109T	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	73	0	0	53	7	11.67	-	-	-	A	122284843	G	A	122284843	3	1	550	1	0	0	0	0	1	0	0	0	4831	971	34	4	331	4	DTX3L	3	122284843	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	10857955	122284843	75737587	226	48288										
PARP14	0	genome.wustl.edu	37	chr3	122447250	122447250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgcaaatgggagaaagcatGtgtattatgtgcgagtactt	12	4	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	122447250	122447250	G	A	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.5212	p.V1738M	0.994	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	190	1	0.52	285	42	12.84	-	-	-	A	122447250	G	A	122447250	3	1	550	1	0	0	0	0	1	0	0	0	11531	1377	48	4	5278	4	PARP14	3	122447250	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	162407	122447250	75575180	227	48289										
MCM2	0	genome.wustl.edu	37	chr3	127323876	127323876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaaaggccactctgtgcgcGagtgggtgagcatggcgggc	17	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	127323876	127323876	G	A	SNP	MCM2	ENST00000265056	human	ensembl	69_37n	1	known	missense	c.550	p.E184K	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_MCM_2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111	52	0	0	44	5	10.2	-	-	-	A	127323876	G	A	127323876	3	1	550	1	0	0	0	0	1	0	0	0	9457	1059	37	1	564	1	MCM2	3	127323876	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4876626	127323876	70698554	228	48290										
ACAD9	0	genome.wustl.edu	37	chr3	128623247	128623247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggagaaatttgcactgatgGctcagaaggcttacgtcatg	12	7	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	128623247	128623247	G	A	SNP	ACAD9	ENST00000308982	human	ensembl	69_37n	1	known	missense	c.1048	p.A350T	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646	57	0	0	58	12	17.14	-	-	-	A	128623247	G	A	128623247	3	1	550	1	0	0	0	0	1	0	0	0	111	1203	42	4	1090	4	ACAD9	3	128623247	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1299371	128623247	69399183	229	48291										
TF	0	genome.wustl.edu	37	chr3	133467373	133467373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgtcattccatccgatggtcCcagtgttgcttgtgtgaaga	11	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	133467373	133467373	C	T	SNP	TF	ENST00000402696	human	ensembl	69_37n	1	known	missense	c.161	p.P54L	0.004	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	TF	HGNC	ENSG00000091513	45	0	0	42	5	10.64	-	-	-	T	133467373	C	T	133467373	3	4	550	1	0	0	0	0	1	0	0	0	15880	623	22	4	167	4	TF	3	133467373	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4844126	133467373	64555057	230	48292										
SLCO2A1	0	genome.wustl.edu	37	chr3	133661563	133661563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggggacagggcacgatcctGtctttgctgaagcggatccc	14	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	133661563	133661563	G	A	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.1511	p.T504I	0.115	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	68	0	0	47	6	11.32	-	-	-	A	133661563	G	A	133661563	3	1	550	1	0	0	0	0	1	0	0	0	14815	1377	48	4	436	4	SLCO2A1	3	133661563	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	194190	133661563	64360867	231	48293										
SLCO2A1	0	genome.wustl.edu	37	chr3	133666198	133666198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgatgatggtggtagctatGcggggaatggcttgtagaga	18	3	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	133666198	133666198	G	A	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	silent	c.1197	p.R399	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	73	0	0	80	12	13.04	-	-	-	A	133666198	G	A	133666198	2	1	550	1	0	0	0	0	0	0	0	1	14815	1306	46	4		4	SLCO2A1	3	133666198	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4635	133666198	64356232	232	48294										
MSL2	0	genome.wustl.edu	37	chr3	135871021	135871021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgtcacaaacgggtggcagGctgtcagacagatcctcagt	13	10	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	135871021	135871021	G	A	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	silent	c.702	p.S234	0.062	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	134	0	0	121	18	12.95	-	-	-	A	135871021	G	A	135871021	2	1	550	1	0	0	0	0	0	0	0	1	9950	1194	42	4		4	MSL2	3	135871021	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2204823	135871021	62151409	233	48295										
TFDP2	0	genome.wustl.edu	37	chr3	141693019	141693019	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taaactcttcgcctaatgttCttctgatcataagcctgcta	5	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	141693019	141693019	C	T	SNP	TFDP2	ENST00000489671	human	ensembl	69_37n	-1	known	silent	c.534	p.K178	1.000	pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP2	HGNC	ENSG00000114126	149	0	0	86	15	14.85	-	-	-	T	141693019	C	T	141693019	2	4	550	1	0	0	0	0	0	0	0	1	15893	912	32	2		2	TFDP2	3	141693019	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5821998	141693019	56329411	234	48296										
SLC9A9	0	genome.wustl.edu	37	chr3	143567304	143567304	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacttcacaagcattctgccCtggcttagtattcagatggc	8	11	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	143567304	143567304	C	T	SNP	SLC9A9	ENST00000498717	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	SLC9A9	HGNC	ENSG00000181804	66	0	0	68	14	17.07	-	-	-	T	143567304	C	T	143567304	1	4	550	0	1	0	0	0	0	0	0	0	14810	696	24	4		4	SLC9A9	3	143567304	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1874285	143567304	54455126	235	48297										
C3orf58	0	genome.wustl.edu	37	chr3	143708573	143708573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaattgccaaagatggccggCtcgaggccttgctggatgag	14	9	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	143708573	143708573	C	T	SNP	C3orf58	ENST00000315691	human	ensembl	69_37n	1	known	missense	c.1183	p.L395F	0.965	NULL	NULL	-	no_errors	C3orf58	HGNC	ENSG00000181744	132	0	0	125	35	21.88	-	-	-	T	143708573	C	T	143708573	3	4	550	1	0	0	0	0	1	0	0	0	2256	797	28	4	1227	4	C3orf58	3	143708573	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	141269	143708573	54313857	236	48298										
GOLIM4	0	genome.wustl.edu	37	chr3	167747599	167747599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggtgctgcggccggccctCctcaagctcagcctgcctct	11	18	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	167747599	167747599	C	T	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.1402	p.E468K	0.409	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	64	0	0	73	22	23.16	-	-	-	T	167747599	C	T	167747599	3	4	550	1	0	0	0	0	1	0	0	0	6615	864	30	2	716	2	GOLIM4	3	167747599	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	24039026	167747599	30274831	237	48299										
MECOM	0	genome.wustl.edu	37	chr3	168807967	168807967	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttcttcatcatccagcaaGtctgaattttgactggtcac	6	11	5	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	168807967	168807967	G	A	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.3195	p.D1065	0.420	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	371	0	0	266	54	16.82	-	-	-	A	168807967	G	A	168807967	2	1	550	1	0	0	0	0	0	0	0	1	9493	1020	36	4		4	MECOM	3	168807967	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1060368	168807967	29214463	238	48300										
LRRC31	0	genome.wustl.edu	37	chr3	169574572	169574572	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgctccctttttggaacttCtgaaggatcagaggcaaatt	9	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	169574572	169574572	C	T	SNP	LRRC31	ENST00000316428	human	ensembl	69_37n	-1	known	silent	c.576	p.Q192	0.017	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248	98	0	0	78	16	17.02	-	-	-	T	169574572	C	T	169574572	2	4	550	1	0	0	0	0	0	0	0	1	9052	912	32	2		2	LRRC31	3	169574572	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	766605	169574572	28447858	239	48301										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	106	0	0	56	24	30	-	-	-	A	178936082	G	A	178936082	3	1	550	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	9361510	178936082	19086348	240	48302										
YEATS2	0	genome.wustl.edu	37	chr3	183442290	183442290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttcacgactttttgtaaaGaaaacaatagtagtgggcaa	8	6	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	183442290	183442290	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	silent	c.621	p.K207	1.000	pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	82	0	0	43	6	12.24	-	-	-	A	183442290	G	A	183442290	2	1	550	1	0	0	0	0	0	0	0	1	17569	933	33	2		2	YEATS2	3	183442290	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4506208	183442290	14580140	241	48303										
ABCC5	0	genome.wustl.edu	37	chr3	183667819	183667819	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggccccactgccacaaggaaCcacgggaagactcctgcgat	11	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	183667819	183667819	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	nonsense	c.3039	p.W1013*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	62	0	0	56	14	20	-	-	-	T	183667819	C	T	183667819	4	4	550	1	0	0	0	0	0	1	0	0	56	508	18	4	1314	4	ABCC5	3	183667819	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	225529	183667819	14354611	242	48304										
ECE2	0	genome.wustl.edu	37	chr3	184001629	184001629	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggatgctgctgggtgggcgGcccacctccacgagggagca	18	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	184001629	184001629	G	A	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	silent	c.1227	p.R409	0.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	31	0	0	34	5	12.82	-	-	-	A	184001629	G	A	184001629	2	1	550	1	0	0	0	0	0	0	0	1	4925	1190	42	4		4	ECE2	3	184001629	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	333810	184001629	14020801	243	48305										
FAM131A	0	genome.wustl.edu	37	chr3	184060696	184060696	+	RNA	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtggacccacctgatagacCttggcattctttcagagcca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	184060696	184060696	C	T	SNP	FAM131A	ENST00000487702	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM131A	HGNC	ENSG00000175182	67	0	0	48	7	12.73	-	-	-	T	184060696	C	T	184060696	1	4	550	0	1	0	0	0	0	0	0	0	5479	696	24	4		4	FAM131A	3	184060696	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	59067	184060696	13961734	244	48306	394	2								
FAM131A	0	genome.wustl.edu	37	chr3	184060697	184060697	+	RNA	SNP	T	T	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtggacccacctgatagaccTtggcattctttcagagccac							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	184060697	184060697	T	C	SNP	FAM131A	ENST00000487702	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM131A	HGNC	ENSG00000175182	66	0	0	49	7	12.5	-	-	-	C	184060697	T	C	184060697	1	2	550	0	1	0	0	0	0	0	0	0	5479	1624	56	5		5	FAM131A	3	184060697	RNA	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1	184060697	13961733	245	48307	394	2								
KIAA0226	0	genome.wustl.edu	37	chr3	197411061	197411061	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaacgaaggatttgctgcttGaggctgtgttccttctgatg	12	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	3	197411061	197411061	G	A	SNP	KIAA0226	ENST00000415452	human	ensembl	69_37n	-1	putative	nonsense	c.1165	p.Q389*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0226	HGNC	ENSG00000145016	326	0	0	384	81	17.38	-	-	-	A	197411061	G	A	197411061	4	1	550	1	0	0	0	0	0	1	0	0	8214	1294	45	2	1140	2	KIAA0226	3	197411061	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13350364	197411061	611369	246	48308										
PIGG	0	genome.wustl.edu	37	chr4	517551	517551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagacaaaggccacggaagcCcctctacctccgaagtgctc	10	15	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	517551	517551	C	T	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.1918	p.P640S	0.000	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	50	0	0	63	26	29.21	-	-	-	T	517551	C	T	517551	3	4	550	1	0	0	0	0	1	0	0	0	11962	623	22	4	1952	4	PIGG	4	517551	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		517551	190636725	247	48309										
ADD1	0	genome.wustl.edu	37	chr4	2900189	2900189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctccggaaccatgggctcgtGtcagttggagagagcgttga	15	9	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	2900189	2900189	G	A	SNP	ADD1	ENST00000514940	human	ensembl	69_37n	1	known	missense	c.32	p.C11Y	0.995	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_start_codon:pseudogene:no_stop_codon	ADD1	HGNC	ENSG00000087274	243	0	0	285	38	11.76	-	-	-	A	2900189	G	A	2900189	3	1	550	1	0	0	0	0	1	0	0	0	304	1364	48	4	941	4	ADD1	4	2900189	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2382638	2900189	188254087	248	48310										
GRK4	0	genome.wustl.edu	37	chr4	3021499	3021499	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgagcagagagccgttttCtatgctgcagagctgtgttg	14	7	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	3021499	3021499	C	T	SNP	GRK4	ENST00000398052	human	ensembl	69_37n	1	known	silent	c.873	p.F291	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388	116	0	0	130	19	12.75	-	-	-	T	3021499	C	T	3021499	2	4	550	1	0	0	0	0	0	0	0	1	6842	912	32	2		2	GRK4	4	3021499	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	121310	3021499	188132777	249	48311										
ACOX3	0	genome.wustl.edu	37	chr4	8391438	8391438	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagttgggatcgttgtcatCtctaaggacacccaaccggt	11	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	8391438	8391438	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	69_37n	-1	known	missense	c.1324	p.D442N	0.066	pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008	62	0	0	39	13	25	-	-	-	T	8391438	C	T	8391438	3	4	550	1	0	0	0	0	1	0	0	0	160	913	32	2	806	2	ACOX3	4	8391438	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5369939	8391438	182762838	250	48312										
DHX15	0	genome.wustl.edu	37	chr4	24534566	24534566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taaagtcagtacttcgacgaGgcaaattaaatctgtccata	7	8	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	24534566	24534566	G	A	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.2021	p.P674L	1.000	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	422	0	0	317	41	11.42	-	-	-	A	24534566	G	A	24534566	3	1	550	1	0	0	0	0	1	0	0	0	4537	1000	35	4	378	4	DHX15	4	24534566	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	16143128	24534566	166619710	251	48313										
PCDH7	0	genome.wustl.edu	37	chr4	30724370	30724370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttctggtcgacacccccatCgctctggtgcaggtgtccga	12	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	30724370	30724370	C	T	SNP	PCDH7	ENST00000511884	human	ensembl	69_37n	1	putative	missense	c.394	p.R132C	0.205	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Protocadherin,pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PCDH7	HGNC	ENSG00000169851	23	0	0	11	3	21.43	-	-	-	T	30724370	C	T	30724370	3	4	550	1	0	0	0	0	1	0	0	0	11589	874	31	1	1328	1	PCDH7	4	30724370	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6189804	30724370	160429906	252	48314										
TBC1D1	0	genome.wustl.edu	37	chr4	38134822	38134822	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accaaagaatggataaattaGagaaaaccaacagcagctta	7	7	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	38134822	38134822	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	missense	c.3250	p.E1084K	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	130	0	0	81	9	10	-	-	-	A	38134822	G	A	38134822	3	1	550	1	0	0	0	0	1	0	0	0	15689	943	33	2	3320	2	TBC1D1	4	38134822	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7410452	38134822	153019454	253	48315										
TBC1D1	0	genome.wustl.edu	37	chr4	38138769	38138769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctccaggtggcaaatggtaGgatccaaagccttgaggcca	12	10	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	38138769	38138769	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	69_37n	1	known	missense	c.3320	p.R1107K	0.983	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	115	0	0	66	11	14.29	-	-	-	A	38138769	G	A	38138769	3	1	550	1	0	0	0	0	1	0	0	0	15689	1000	35	4	3394	4	TBC1D1	4	38138769	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3947	38138769	153015507	254	48316										
RHOH	0	genome.wustl.edu	37	chr4	40245081	40245081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctctgttggtgcgcttcacCtccgagaccttcccggaggc	11	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	40245081	40245081	C	T	SNP	RHOH	ENST00000381799	human	ensembl	69_37n	1	known	silent	c.75	p.T25	0.995	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOH	HGNC	ENSG00000168421	82	0	0	103	15	12.71	-	-	-	T	40245081	C	T	40245081	2	4	550	1	0	0	0	0	0	0	0	1	13424	668	24	4		4	RHOH	4	40245081	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2106312	40245081	150909195	255	48317										
RBM47	0	genome.wustl.edu	37	chr4	40440209	40440209	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acgtcctcgtccacgtcgatCtcaggttcggcccagtccac	9	17	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	40440209	40440209	C	T	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	silent	c.702	p.E234	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	62	0	0	77	28	26.67	-	-	-	T	40440209	C	T	40440209	2	4	550	1	0	0	0	0	0	0	0	1	13224	912	32	2		2	RBM47	4	40440209	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	195128	40440209	150714067	256	48318										
ZAR1	0	genome.wustl.edu	37	chr4	48494868	48494868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtgtggtgtgtacagggaaCtaacaaggtaagaaatacca	12	5	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	48494868	48494868	C	T	SNP	ZAR1	ENST00000327939	human	ensembl	69_37n	1	known	missense	c.1049	p.T350I	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	no_errors	ZAR1	HGNC	ENSG00000182223	138	0	0	115	89	43.63	-	-	-	T	48494868	C	T	48494868	3	4	550	1	0	0	0	0	1	0	0	0	17612	565	20	4	1055	4	ZAR1	4	48494868	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	8054659	48494868	142659408	257	48319										
CXCL3	0	genome.wustl.edu	37	chr4	74904187	74904187	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcggcgcggggcgcccacccCagccgcgtccggcccgggga	17	19	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	74904187	74904187	C	T	SNP	CXCL3	ENST00000502974	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CXCL3	HGNC	ENSG00000163734	22	0	0	13	13	50	-	-	-	T	74904187	C	T	74904187	1	4	550	0	1	0	0	0	0	0	0	0	4117	609	21	4		4	CXCL3	4	74904187	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	26409319	74904187	116250089	258	48320										
NAAA	0	genome.wustl.edu	37	chr4	76852392	76852392	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcatcaccagaaactgtaaaCttgtgtgggctctggccagt	10	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	76852392	76852392	C	T	SNP	NAAA	ENST00000286733	human	ensembl	69_37n	-1	known	silent	c.564	p.K188	1.000	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	-	no_errors	NAAA	HGNC	ENSG00000138744	93	0	0	67	10	12.99	-	-	-	T	76852392	C	T	76852392	2	4	550	1	0	0	0	0	0	0	0	1	10199	564	20	4		4	NAAA	4	76852392	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1948205	76852392	114301884	259	48321										
FRAS1	0	genome.wustl.edu	37	chr4	79462128	79462128	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggcacccggaccgggtggaGaagaacgtgaatagacacta	14	9	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	79462128	79462128	G	A	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	missense	c.6574	p.E2192K	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	112	0	0	106	12	10.08	-	-	-	A	79462128	G	A	79462128	3	1	550	1	0	0	0	0	1	0	0	0	6090	933	33	2	12258	2	FRAS1	4	79462128	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2609736	79462128	111692148	260	48322										
BMP3	0	genome.wustl.edu	37	chr4	81967378	81967378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acaccggaattttcccactgGaactgttcccaaatgggata	8	11	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	81967378	81967378	G	A	SNP	BMP3	ENST00000282701	human	ensembl	69_37n	1	known	missense	c.803	p.G268E	0.007	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785	153	0	0	156	34	17.89	-	-	-	A	81967378	G	A	81967378	3	1	550	1	0	0	0	0	1	0	0	0	1466	1174	41	2	809	2	BMP3	4	81967378	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2505250	81967378	109186898	261	48323										
HELQ	0	genome.wustl.edu	37	chr4	84361019	84361019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaaaatattaacatacttgCttaaaaatttgcatatcatt	2	5	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	84361019	84361019	C	T	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.1805	p.S602N	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	90	0	0	54	37	40.66	-	-	-	T	84361019	C	T	84361019	3	4	550	1	0	0	0	0	1	0	0	0	7098	797	28	4	1544	4	HELQ	4	84361019	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2393641	84361019	106793257	262	48324										
PKD2	0	genome.wustl.edu	37	chr4	88996109	88996109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctgttggatggggtggccGaggtcagtagtcatgagctg	19	6	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	88996109	88996109	G	A	SNP	PKD2	ENST00000237596	human	ensembl	69_37n	1	known	missense	c.2668	p.E890K	1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_HAND_2,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	90	0	0	120	66	35.48	-	-	-	A	88996109	G	A	88996109	3	1	550	1	0	0	0	0	1	0	0	0	12040	1059	37	1	2722	1	PKD2	4	88996109	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4635090	88996109	102158167	263	48325										
ATOH1	0	genome.wustl.edu	37	chr4	94750082	94750082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagcctttgcagtgcaatgtCccgcctgctgcatgcagaag	12	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	94750082	94750082	C	T	SNP	ATOH1	ENST00000306011	human	ensembl	69_37n	1	known	missense	c.5	p.S2F	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH1	HGNC	ENSG00000172238	22	0	0	35	6	14.63	-	-	-	T	94750082	C	T	94750082	3	4	550	1	0	0	0	0	1	0	0	0	1116	855	30	2	7	2	ATOH1	4	94750082	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5753973	94750082	96404194	264	48326										
NFKB1	0	genome.wustl.edu	37	chr4	103527727	103527727	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgagggctggggccgacctGagccttctggaccgcttggg	17	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	103527727	103527727	G	A	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	silent	c.1827	p.L609	0.998	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	200	0	0	185	95	33.93	-	-	-	A	103527727	G	A	103527727	2	1	550	1	0	0	0	0	0	0	0	1	10447	1277	45	2		2	NFKB1	4	103527727	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8777645	103527727	87626549	265	48327										
TET2	0	genome.wustl.edu	37	chr4	106157065	106157065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aacatctccagttccaaaaaCcctcacaccaggtgcacttc	4	16	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	106157065	106157065	C	T	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.1966	p.P656S	0.016	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	234	0	0	180	28	13.46	-	-	-	T	106157065	C	T	106157065	3	4	550	1	0	0	0	0	1	0	0	0	15865	507	18	4	1968	4	TET2	4	106157065	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2629338	106157065	84997211	266	48328										
TRAM1L1	0	genome.wustl.edu	37	chr4	118005598	118005598	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacccacctctgaagccagaGagtaattaagttccatgtta	7	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	118005598	118005598	G	A	SNP	TRAM1L1	ENST00000310754	human	ensembl	69_37n	-1	known	missense	c.952	p.L318F	0.000	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599	233	0	0	202	61	23.11	-	-	-	A	118005598	G	A	118005598	3	1	550	1	0	0	0	0	1	0	0	0	16548	942	33	2	161	2	TRAM1L1	4	118005598	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11848533	118005598	73148678	267	48329										
SEC24D	0	genome.wustl.edu	37	chr4	119661853	119661853	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actgtcttcactgagtttgtCatcgtgcttgaactccacgg	9	11	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	119661853	119661853	C	T	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.2206	p.D736N	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	266	0	0	215	70	24.56	-	-	-	T	119661853	C	T	119661853	3	4	550	1	0	0	0	0	1	0	0	0	14085	826	29	2	923	2	SEC24D	4	119661853	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1656255	119661853	71492423	268	48330										
FAT4	0	genome.wustl.edu	37	chr4	126411332	126411332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcactccggcttcacctgtaGctgcccagactcgcacacgg	10	17	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	126411332	126411332	G	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.13355	p.S4452N	0.896	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	148	0	0	242	47	16.26	-	-	-	A	126411332	G	A	126411332	3	1	550	1	0	0	0	0	1	0	0	0	5738	971	34	4	13421	4	FAT4	4	126411332	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6749479	126411332	64742944	269	48331										
CPE	0	genome.wustl.edu	37	chr4	166385682	166385682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaacctgatccacagtaccCgcattcacatcatgccttcc	4	17	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	166385682	166385682	C	T	SNP	CPE	ENST00000402744	human	ensembl	69_37n	1	known	missense	c.448	p.R150C	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPE	HGNC	ENSG00000109472	118	0	0	107	15	12.3	-	-	-	T	166385682	C	T	166385682	3	4	550	1	0	0	0	0	1	0	0	0	3829	652	23	1	454	1	CPE	4	166385682	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	39974350	166385682	24768594	270	48332										
NEK1	0	genome.wustl.edu	37	chr4	170476894	170476894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttgcattggcttgtttagaCaccgccttcaatcttttcaa	6	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	170476894	170476894	C	T	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	silent	c.1539	p.V513	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	202	0	0	207	34	14.05	-	-	-	T	170476894	C	T	170476894	2	4	550	1	0	0	0	0	0	0	0	1	10393	465	17	4		4	NEK1	4	170476894	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4091212	170476894	20677382	271	48333										
FAT1	0	genome.wustl.edu	37	chr4	187521364	187521364	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctgtgcccgatgcagtatGaacttggtctagaaccaagc	12	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	4	187521364	187521364	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.11791	p.H3931Y	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	74	0	0	109	58	34.73	-	-	-	A	187521364	G	A	187521364	3	1	550	1	0	0	0	0	1	0	0	0	5735	1290	45	2	1999	2	FAT1	4	187521364	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	17044470	187521364	3632912	272	48334										
LRRC14B	0	genome.wustl.edu	37	chr5	195144	195144	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcggcccgcgccctccggcgCctcttcaccgcactctgtga	10	20	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	195144	195144	C	T	SNP	LRRC14B	ENST00000328278	human	ensembl	69_37n	1	novel	silent	c.1221	p.R407	0.525	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	30	0	0	22	6	21.43	-	-	-	T	195144	C	T	195144	2	4	550	1	0	0	0	0	0	0	0	1	9035	726	26	4		4	LRRC14B	5	195144	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		195144	180720116	273	48335										
BRD9	0	genome.wustl.edu	37	chr5	865650	865650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggagcttcgtcgtctcatcCaagttcaaatggctgtcgtc	10	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	865650	865650	C	T	SNP	BRD9	ENST00000467963	human	ensembl	69_37n	-1	known	silent	c.1572	p.L524	1.000	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310	73	0	0	30	9	23.08	-	-	-	T	865650	C	T	865650	2	4	550	1	0	0	0	0	0	0	0	1	1515	593	21	4		4	BRD9	5	865650	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	670506	865650	180049610	274	48336										
TRIO	0	genome.wustl.edu	37	chr5	14507247	14507247	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttagggctgaccagggtcgcCtcctggactgcgtggtgcga	16	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	14507247	14507247	C	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.8629	p.L2877F	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	30	0	0	36	8	18.18	-	-	-	T	14507247	C	T	14507247	3	4	550	1	0	0	0	0	1	0	0	0	16648	681	24	4	8851	4	TRIO	5	14507247	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	13641597	14507247	166408013	275	48337										
ANKH	0	genome.wustl.edu	37	chr5	14769104	14769104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctatcagtgtgtgaaagacgGcagcgatggcccctgccacc	12	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	14769104	14769104	G	A	SNP	ANKH	ENST00000284268	human	ensembl	69_37n	-1	known	missense	c.293	p.A98V	0.972	pfam_ANKH	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122	108	0	0	67	13	16.25	-	-	-	A	14769104	G	A	14769104	3	1	550	1	0	0	0	0	1	0	0	0	627	1203	42	4	1229	4	ANKH	5	14769104	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	261857	14769104	166146156	276	48338										
PDZD2	0	genome.wustl.edu	37	chr5	32089409	32089409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaacaccacagctgcccccaGgtccccccagtgtgtgctgg	10	17	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	32089409	32089409	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.5855	p.R1952K	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	108	0	0	74	16	17.78	-	-	-	A	32089409	G	A	32089409	3	1	550	1	0	0	0	0	1	0	0	0	11774	1000	35	4	5929	4	PDZD2	5	32089409	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	17320305	32089409	148825851	277	48339										
C5orf34	0	genome.wustl.edu	37	chr5	43494667	43494667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggacttcccggtctatctgGaggaaggttatttactgagt	12	7	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	43494667	43494667	G	A	SNP	C5orf34	ENST00000306862	human	ensembl	69_37n	-1	known	missense	c.1189	p.P397S	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244	160	0	0	100	14	12.28	-	-	-	A	43494667	G	A	43494667	3	1	550	1	0	0	0	0	1	0	0	0	2314	1174	41	2	755	2	C5orf34	5	43494667	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11405258	43494667	137420593	278	48340										
DHX29	0	genome.wustl.edu	37	chr5	54570701	54570701	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatagaaatatacctaagtaTgcaagaagttccaaaatgag	7	5	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	54570701	54570701	T	C	SNP	DHX29	ENST00000251636	human	ensembl	69_37n	-1	known	silent	c.2565	p.A855	0.942	pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248	321	0	0	191	54	22.04	-	-	-	C	54570701	T	C	54570701	2	2	550	1	0	0	0	0	0	0	0	1	4539	1451	51	5		5	DHX29	5	54570701	Silent	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	11076034	54570701	126344559	279	48341										
PLK2	0	genome.wustl.edu	37	chr5	57752385	57752385	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcaaatcatgcctaagcttGtagatgtcttcatcttcttt	5	9	6	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	57752385	57752385	G	A	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	silent	c.1188	p.Y396	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	117	0	0	131	23	14.94	-	-	-	A	57752385	G	A	57752385	2	1	550	1	0	0	0	0	0	0	0	1	12170	1372	48	4		4	PLK2	5	57752385	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3181684	57752385	123162875	280	48342										
OCLN	0	genome.wustl.edu	37	chr5	68840936	68840936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgtgatgagctggaggagGactggatcaggtaccgactc	15	9	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	68840936	68840936	G	A	SNP	OCLN	ENST00000355237	human	ensembl	69_37n	1	known	missense	c.1243	p.D415N	1.000	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_MARVEL-like_dom,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822	86	0	0	113	18	13.74	-	-	-	A	68840936	G	A	68840936	3	1	550	1	0	0	0	0	1	0	0	0	10893	1174	41	2	1261	2	OCLN	5	68840936	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11088551	68840936	112074324	281	48343										
MRPS27	0	genome.wustl.edu	37	chr5	71524187	71524187	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgcaccaaagttcctctcCtcttcccactgcaacagaat	5	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	71524187	71524187	C	T	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	silent	c.642	p.E214	0.997	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	296	0	0	133	48	26.52	-	-	-	T	71524187	C	T	71524187	2	4	550	1	0	0	0	0	0	0	0	1	9910	680	24	4		4	MRPS27	5	71524187	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2683251	71524187	109391073	282	48344										
ZNF366	0	genome.wustl.edu	37	chr5	71739898	71739898	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctcgggtgtgcagagctgCtggctctggggggccaggcc	18	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	71739898	71739898	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	silent	c.1920	p.Q640	0.007	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	96	0	0	129	90	40.91	-	-	-	T	71739898	C	T	71739898	2	4	550	1	0	0	0	0	0	0	0	1	17966	796	28	4		4	ZNF366	5	71739898	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	215711	71739898	109175362	283	48345										
F2R	0	genome.wustl.edu	37	chr5	76028300	76028300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagtcctcttcaaaaacaaCttcctgcattcatctcagaa	4	13	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	76028300	76028300	C	T	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	missense	c.250	p.L84F	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	196	0	0	181	25	12.14	-	-	-	T	76028300	C	T	76028300	3	4	550	1	0	0	0	0	1	0	0	0	5380	565	20	4	256	4	F2R	5	76028300	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4288402	76028300	104886960	284	48346										
CMYA5	0	genome.wustl.edu	37	chr5	79028839	79028839	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcagttcttgcagaagaagaCaaggtggcaattaaaggtgc	12	6	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	79028839	79028839	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	silent	c.4251	p.D1417	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	145	0	0	68	22	24.44	-	-	-	T	79028839	C	T	79028839	2	4	550	1	0	0	0	0	0	0	0	1	3620	477	17	4		4	CMYA5	5	79028839	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3000539	79028839	101886421	285	48347										
COX7C	0	genome.wustl.edu	37	chr5	85913776	85913776	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcttttcagtccttgcgcaCcggggaacaaggtcgtgaaa	11	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	85913776	85913776	C	T	SNP	COX7C	ENST00000505430	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7C	HGNC	ENSG00000127184	14	0	0	11	5	31.25	-	-	-	T	85913776	C	T	85913776	1	4	550	0	1	0	0	0	0	0	0	0	3814	522	18	4		4	COX7C	5	85913776	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6884937	85913776	95001484	286	48348										
CHSY3	0	genome.wustl.edu	37	chr5	129521229	129521229	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtgcaggtggatttgatacCtcaatacaaggctggggact	14	7	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	129521229	129521229	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	silent	c.2394	p.T798	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	226	0	0	239	38	13.72	-	-	-	T	129521229	C	T	129521229	2	4	550	1	0	0	0	0	0	0	0	1	3442	668	24	4		4	CHSY3	5	129521229	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	43607453	129521229	51394031	287	48349										
ACSL6	0	genome.wustl.edu	37	chr5	131302146	131302146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtctccagtgtgaagccagCcatcgctgtccagggcctcc	11	15	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	131302146	131302146	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	missense	c.1676	p.G559D	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	120	0	0	53	27	33.75	-	-	-	T	131302146	C	T	131302146	3	4	550	1	0	0	0	0	1	0	0	0	181	739	26	4	512	4	ACSL6	5	131302146	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1780917	131302146	49613114	288	48350										
SEC24A	0	genome.wustl.edu	37	chr5	134029565	134029565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctttcaaacacaactcccaaCtcttggagtgggagccctga	8	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	134029565	134029565	C	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	missense	c.1928	p.T643I	0.998	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	109	0	0	130	74	36.27	-	-	-	T	134029565	C	T	134029565	3	4	550	1	0	0	0	0	1	0	0	0	14082	565	20	4	1978	4	SEC24A	5	134029565	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2727419	134029565	46885695	289	48351										
KIF20A	0	genome.wustl.edu	37	chr5	137520321	137520321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggcagacacaggccttgatGatgatattgaaaatgaagct	11	6	0	6			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	137520321	137520321	G	A	SNP	KIF20A	ENST00000394894	human	ensembl	69_37n	1	known	missense	c.1639	p.D547N	0.991	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	242	0	0	163	40	19.7	-	-	-	A	137520321	G	A	137520321	3	1	550	1	0	0	0	0	1	0	0	0	8338	1290	45	2	1685	2	KIF20A	5	137520321	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3490756	137520321	43394939	290	48352										
PCDHA1	0	genome.wustl.edu	37	chr5	140166672	140166672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attagtgaccacattaaatgCctctgatgctgacgaaggtg	10	8	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140166672	140166672	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.797	p.A266V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	138	0	0	141	22	13.5	-	-	-	T	140166672	C	T	140166672	3	4	550	1	0	0	0	0	1	0	0	0	11592	739	26	4	799	4	PCDHA1	5	140166672	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2646351	140166672	40748588	291	48353										
PCDHA10	0	genome.wustl.edu	37	chr5	140237392	140237392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctgcggtcggtggttgcgGgtcacgtggtggctaaggtg	20	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140237392	140237392	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1759	p.G587S	0.995	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	23	0	0	33	24	42.11	-	-	-	A	140237392	G	A	140237392	3	1	550	1	0	0	0	0	1	0	0	0	11593	1232	43	4	1761	4	PCDHA10	5	140237392	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	70720	140237392	40677868	292	48354										
PCDHA11	0	genome.wustl.edu	37	chr5	140248985	140248985	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaggagctgtgcgggcagagCgcggagtgcagcatccacct	17	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140248985	140248985	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	silent	c.297	p.S99	0.003	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	110	0	0	161	28	14.81	-	-	-	T	140248985	C	T	140248985	2	4	550	1	0	0	0	0	0	0	0	1	11594	767	27	1		1	PCDHA11	5	140248985	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	11593	140248985	40666275	293	48355										
PCDHA11	0	genome.wustl.edu	37	chr5	140249145	140249145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaatcggactcgcgttttCcactagagggagcttctgat	11	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140249145	140249145	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.457	p.P153S	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	112	0	0	138	27	16.36	-	-	-	T	140249145	C	T	140249145	3	4	550	1	0	0	0	0	1	0	0	0	11594	855	30	2	459	2	PCDHA11	5	140249145	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	160	140249145	40666115	294	48356										
PCDHGA5	0	genome.wustl.edu	37	chr5	140744614	140744614	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcgacgcaaacgacaatgcGcccctgttcaccccatccga	7	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140744614	140744614	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	silent	c.717	p.A239	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	90	0	0	108	29	21.17	-	-	-	A	140744614	G	A	140744614	2	1	550	1	0	0	0	0	0	0	0	1	11630	1074	38	1		1	PCDHGA5	5	140744614	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	495469	140744614	40170646	295	48357										
DIAPH1	0	genome.wustl.edu	37	chr5	140963073	140963073	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgacagggttgttgttgagaGacacacgaagggactccagg	15	7	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	140963073	140963073	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	missense	c.512	p.S171F	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	303	0	0	261	46	14.98	-	-	-	A	140963073	G	A	140963073	3	1	550	1	0	0	0	0	1	0	0	0	4554	942	33	2	3402	2	DIAPH1	5	140963073	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	218459	140963073	39952187	296	48358										
PLAC8L1	0	genome.wustl.edu	37	chr5	145477822	145477822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccactggctccccgaacaggCtgcttcaccacagcgctggc	10	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	145477822	145477822	C	T	SNP	PLAC8L1	ENST00000311450	human	ensembl	69_37n	-1	known	silent	c.153	p.Q51	1.000	NULL	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8L1	HGNC	ENSG00000173261	121	0	0	71	8	10.13	-	-	-	T	145477822	C	T	145477822	2	4	550	1	0	0	0	0	0	0	0	1	12090	796	28	4		4	PLAC8L1	5	145477822	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4514749	145477822	35437438	297	48359										
TNIP1	0	genome.wustl.edu	37	chr5	150425443	150425443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcactgcgctgctgctccagCatcttcaccttcttctcggc	7	17	5	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	150425443	150425443	C	T	SNP	TNIP1	ENST00000315050	human	ensembl	69_37n	-1	known	missense	c.915	p.M305I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901	87	0	0	143	34	19.21	-	-	-	T	150425443	C	T	150425443	3	4	550	1	0	0	0	0	1	0	0	0	16409	710	25	4	1035	4	TNIP1	5	150425443	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4947621	150425443	30489817	298	48360										
SLC36A2	0	genome.wustl.edu	37	chr5	150726864	150726864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaacagcactcacgttatgCccttggtcttcttcaagcct	6	13	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	150726864	150726864	C	T	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	missense	c.158	p.G53D	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	323	0	0	172	23	11.79	-	-	-	T	150726864	C	T	150726864	3	4	550	1	0	0	0	0	1	0	0	0	14683	739	26	4	1333	4	SLC36A2	5	150726864	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	301421	150726864	30188396	299	48361										
G3BP1	0	genome.wustl.edu	37	chr5	151183642	151183642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtgggaagggggcttgcgcCacggcagtgaatcttcatgg	17	8	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	151183642	151183642	C	T	SNP	G3BP1	ENST00000356245	human	ensembl	69_37n	1	known	missense	c.1391	p.P464L	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907	91	0	0	96	16	14.29	-	-	-	T	151183642	C	T	151183642	3	4	550	1	0	0	0	0	1	0	0	0	6190	594	21	4	1433	4	G3BP1	5	151183642	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	456778	151183642	29731618	300	48362										
FAM71B	0	genome.wustl.edu	37	chr5	156589684	156589685	+	Frame_Shift_Ins	INS	-	-	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaagagctgatcttactggINSctttcttttgtaaagctcct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	156589684	156589685	-	A	INS	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1592_1591	p.A531fs	0.140:0.128	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	140	0	0	157	29	15.59	-	-	-	A	156589685	-	A	156589684	7	5	550	1	0	1	1	0	0	0	0	0	5653	1203	42	0	229	0	FAM71B	5	156589684	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	5406042	156589684	24325576	301	48363										
FAM71B	0	genome.wustl.edu	37	chr5	156590311	156590311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttgctggattcattttctCctggatttttgatagctgct	8	8	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	156590311	156590311	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.965	p.G322E	0.003	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	143	0	0	103	13	11.21	-	-	-	T	156590311	C	T	156590311	3	4	550	1	0	0	0	0	1	0	0	0	5653	855	30	2	856	2	FAM71B	5	156590311	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	627	156590311	24324949	302	48364										
FAM153B	0	genome.wustl.edu	37	chr5	175523892	175523892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tactctcggagacgttgccaGgctctgtgaaggtaaagtct	12	9	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	175523892	175523892	G	A	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	missense	c.430	p.G144S	0.013	NULL	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	51	0	0	50	12	19.35	-	-	-	A	175523892	G	A	175523892	3	1	550	1	0	0	0	0	1	0	0	0	5501	1000	35	4	456	4	FAM153B	5	175523892	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	18933581	175523892	5391368	303	48365										
PDLIM7	0	genome.wustl.edu	37	chr5	176923433	176923433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcacccgggaaatggagagGggcacattgaagtccttgcc	13	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	5	176923433	176923433	G	A	SNP	PDLIM7	ENST00000355841	human	ensembl	69_37n	-1	known	silent	c.81	p.P27	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923	21	0	0	5	3	37.5	-	-	-	A	176923433	G	A	176923433	2	1	550	1	0	0	0	0	0	0	0	1	11757	1219	43	4		4	PDLIM7	5	176923433	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1399541	176923433	3991827	304	48366										
F13A1	0	genome.wustl.edu	37	chr6	6266929	6266929	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggggaagactggatggacaGccgcacagacctgtcctctc	14	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	6266929	6266929	G	A	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	silent	c.433	p.L145	0.998	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	171	0	0	285	132	31.58	-	-	-	A	6266929	G	A	6266929	2	1	550	1	0	0	0	0	0	0	0	1	5377	962	34	4		4	F13A1	6	6266929	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		6266929	164848138	305	48367										
RREB1	0	genome.wustl.edu	37	chr6	7247180	7247181	+	Frame_Shift_Ins	INS	-	-	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctgaacaggaggagaagINSccccccgagaccccggcaga							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	7247180	7247181	-	C	INS	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	frame_shift_ins	c.4497_4498	p.E1501fs	0.080:0.159	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	12	0	0	4	2	33.33	-	-	-	C	7247181	-	C	7247180	7	5	550	1	0	1	1	0	0	0	0	0	13765	962	34	0	4531	0	RREB1	6	7247180	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	980251	7247180	163867887	306	48368										
NEDD9	0	genome.wustl.edu	37	chr6	11190371	11190371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagccaccgtgtgggtactcCgttgagttcatgatgctctc	12	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	11190371	11190371	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	silent	c.1731	p.T577	0.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	66	0	0	169	38	18.27	-	-	-	T	11190371	C	T	11190371	2	4	550	1	0	0	0	0	0	0	0	1	10385	639	23	1		1	NEDD9	6	11190371	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3943191	11190371	159924696	307	48369										
HIVEP1	0	genome.wustl.edu	37	chr6	12164065	12164065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atacaaatatggccccacaaGtccatccaccaggactggct	7	14	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	12164065	12164065	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.7528	p.V2510I	0.104	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	156	0	0	102	18	15	-	-	-	A	12164065	G	A	12164065	3	1	550	1	0	0	0	0	1	0	0	0	7237	1029	36	4	7558	4	HIVEP1	6	12164065	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	973694	12164065	158951002	308	48370										
HIST1H2BE	0	genome.wustl.edu	37	chr6	26184061	26184061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atccgctcccgccccgaagaAgggctccaagaaggccgtga	12	15	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	26184061	26184061	A	G	SNP	HIST1H2BE	ENST00000356530	human	ensembl	69_37n	1	known	missense	c.38	p.K13R	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BE	HGNC	ENSG00000197697	127	0	0	143	149	51.03	-	-	-	G	26184061	A	G	26184061	3	3	550	1	0	0	0	0	1	0	0	0	7195	72	3	5	40	5	HIST1H2BE	6	26184061	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	14019996	26184061	144931006	309	48371										
HIST1H2BE	0	genome.wustl.edu	37	chr6	26184323	26184323	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagatccagacggccgtgcgCctgctgcttcccggggagct	15	14	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	26184323	26184323	C	G	SNP	HIST1H2BE	ENST00000356530	human	ensembl	69_37n	1	known	silent	c.300	p.R100	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BE	HGNC	ENSG00000197697	96	0	0	129	54	29.35	-	-	-	G	26184323	C	G	26184323	2	3	550	1	0	0	0	0	0	0	0	1	7195	726	26	4		4	HIST1H2BE	6	26184323	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	262	26184323	144930744	310	48372										
HIST1H4E	0	genome.wustl.edu	37	chr6	26204905	26204905	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcaaaggcggaaagggactGggtaaaggaggcgctaagcg	19	6	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	26204905	26204905	G	A	SNP	HIST1H4E	ENST00000360441	human	ensembl	69_37n	1	known	silent	c.33	p.L11	0.624	superfamily_Histone-fold,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518	120	0	0	161	32	16.49	-	-	-	A	26204905	G	A	26204905	2	1	550	1	0	0	0	0	0	0	0	1	7220	1335	47	4		4	HIST1H4E	6	26204905	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	20582	26204905	144910162	311	48373										
SCAND3	0	genome.wustl.edu	37	chr6	28542488	28542488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcattttggaaggtttaacaGgcaaacttctttgaatctca	8	7	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	28542488	28542488	G	A	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.1994	p.P665L	0.925	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	202	0	0	226	34	13.03	-	-	-	A	28542488	G	A	28542488	3	1	550	1	0	0	0	0	1	0	0	0	13963	1000	35	4	1991	4	SCAND3	6	28542488	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2337583	28542488	142572579	312	48374										
TRIM39	0	genome.wustl.edu	37	chr6	30309911	30309911	+	Frame_Shift_Del	DEL	T	T	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctacaatgtcacagaccgcTctcatatctacaccttcact							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	30309911	30309911	T	-	DEL	TRIM39	ENST00000376656	human	ensembl	69_37n	1	known	frame_shift_del	c.1432	p.S478fs	0.999	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM39	HGNC	ENSG00000204599	121	0	0	92	37	28.68	-	-	-	-	30309911	T	-	30309911	7	5	550	1	0	1	0	1	0	0	0	0	16609	1551	54	0	1458	0	TRIM39	6	30309911	Frame_Shift_Del	DEL	T	TCGA-BH-A0HF-01A-11W-A071-09	1767423	30309911	140805156	313	48375										
MUC21	0	genome.wustl.edu	37	chr6	30954668	30954668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctccagtggggccagcaCagccaccaactctgagtcca	10	16	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	30954668	30954668	C	T	SNP	MUC21	ENST00000376296	human	ensembl	69_37n	1	known	missense	c.716	p.T239I	0.000	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	223	0	0	176	21	10.66	-	-	-	T	30954668	C	T	30954668	3	4	550	1	0	0	0	0	1	0	0	0	10049	478	17	4	722	4	MUC21	6	30954668	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	644757	30954668	140160399	314	48376										
MICB	0	genome.wustl.edu	37	chr6	31475235	31475235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatatgtttctgctgctatGccatgttttgttattattat	6	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	31475235	31475235	G	A	SNP	MICB	ENST00000252229	human	ensembl	69_37n	1	known	missense	c.951	p.M317I	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	MICB	HGNC	ENSG00000204516	73	0	0	35	9	20.45	-	-	-	A	31475235	G	A	31475235	3	1	550	1	0	0	0	0	1	0	0	0	9646	1319	46	4	969	4	MICB	6	31475235	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	520567	31475235	139639832	315	48377										
C6orf47	0	genome.wustl.edu	37	chr6	31627049	31627049	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagcccatgcagggcagccaGgaaggacagtaggccatgta	15	10	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	31627049	31627049	G	A	SNP	C6orf47	ENST00000375911	human	ensembl	69_37n	-1	known	silent	c.676	p.L226	0.821	NULL	NULL	-	no_errors	C6orf47	HGNC	ENSG00000204439	47	0	0	35	9	20.45	-	-	-	A	31627049	G	A	31627049	2	1	550	1	0	0	0	0	0	0	0	1	2385	991	35	4		4	C6orf47	6	31627049	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	151814	31627049	139488018	316	48378										
NEU1	0	genome.wustl.edu	37	chr6	31830526	31830526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccccagcgtctgtccgggaGcgccgtgctgggtcgctccc	14	18	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	31830526	31830526	G	A	SNP	NEU1	ENST00000375631	human	ensembl	69_37n	-1	known	missense	c.28	p.L10F	0.000	NULL	superfamily_Neuraminidase	-	no_errors	NEU1	HGNC	ENSG00000204386	22	0	0	25	10	28.57	-	-	-	A	31830526	G	A	31830526	3	1	550	1	0	0	0	0	1	0	0	0	10413	971	34	4	1243	4	NEU1	6	31830526	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	203477	31830526	139284541	317	48379										
SKIV2L	0	genome.wustl.edu	37	chr6	31927857	31927857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acagttgtttctgtcatcccCagcctggctgcctctgcatg	9	14	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	31927857	31927857	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	missense	c.197	p.P66L	0.972	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	65	0	0	55	18	24.66	-	-	-	T	31927857	C	T	31927857	3	4	550	1	0	0	0	0	1	0	0	0	14448	594	21	4	207	4	SKIV2L	6	31927857	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	97331	31927857	139187210	318	48380										
SKIV2L	0	genome.wustl.edu	37	chr6	31934540	31934540	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcacgtacactatgatcctcAacttgctgcgagtggatgcc	9	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	31934540	31934540	A	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	missense	c.2257	p.N753Y	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	82	0	0	58	31	34.83	-	-	-	T	31934540	A	T	31934540	3	4	550	1	0	0	0	0	1	0	0	0	14448	130	5	5	2331	5	SKIV2L	6	31934540	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	6683	31934540	139180527	319	48381										
PPT2	0	genome.wustl.edu	37	chr6	32122470	32122470	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagcccccgcgccccaccgCgcgtcctacaagccggtcat	10	21	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	32122470	32122470	C	T	SNP	PPT2	ENST00000361568	human	ensembl	69_37n	1	known	silent	c.117	p.R39	0.002	NULL	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988	116	0	0	80	19	19.19	-	-	-	T	32122470	C	T	32122470	2	4	550	1	0	0	0	0	0	0	0	1	12489	755	27	1		1	PPT2	6	32122470	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	187930	32122470	138992597	320	48382										
KIFC1	0	genome.wustl.edu	37	chr6	33372938	33372938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctctcccggtctgacgagCggcgtgggaccctgagtggg	17	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	33372938	33372938	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.1066	p.R356W	0.547	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	103	0	0	103	18	14.88	-	-	-	T	33372938	C	T	33372938	3	4	550	1	0	0	0	0	1	0	0	0	8364	759	27	1	1092	1	KIFC1	6	33372938	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1250468	33372938	137742129	321	48383										
IP6K3	0	genome.wustl.edu	37	chr6	33694578	33694578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggtggcattgcaggccccaCgggttgaagctcttcctctc	12	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	33694578	33694578	C	T	SNP	IP6K3	ENST00000293756	human	ensembl	69_37n	-1	known	silent	c.519	p.P173	0.007	NULL	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896	37	0	0	51	7	12.07	-	-	-	T	33694578	C	T	33694578	2	4	550	1	0	0	0	0	0	0	0	1	7844	523	19	1		1	IP6K3	6	33694578	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	321640	33694578	137420489	322	48384										
GRM4	0	genome.wustl.edu	37	chr6	34003681	34003681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acccctggcgaagcgggggtCgagtgtccgctggtcctgga	17	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	34003681	34003681	C	T	SNP	GRM4	ENST00000374181	human	ensembl	69_37n	-1	known	missense	c.2206	p.D736N	0.844	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	46	0	0	33	17	34	-	-	-	T	34003681	C	T	34003681	3	4	550	1	0	0	0	0	1	0	0	0	6850	884	31	1	544	1	GRM4	6	34003681	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	309103	34003681	137111386	323	48385										
DEF6	0	genome.wustl.edu	37	chr6	35287670	35287670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaggagcgctacatcgaacGggcgcagcaggagaaggaag	17	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	35287670	35287670	G	A	SNP	DEF6	ENST00000316637	human	ensembl	69_37n	1	known	missense	c.1457	p.R486Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892	14	0	0	10	9	47.37	-	-	-	A	35287670	G	A	35287670	3	1	550	1	0	0	0	0	1	0	0	0	4417	1116	39	1	1491	1	DEF6	6	35287670	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1283989	35287670	135827397	324	48386										
PPP2R5D	0	genome.wustl.edu	37	chr6	42977068	42977068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctccccaccaggtggcagaGcgtgctctctattactggaa	10	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	42977068	42977068	G	A	SNP	PPP2R5D	ENST00000470467	human	ensembl	69_37n	1	novel	missense	c.964	p.A322T	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R5D	HGNC	ENSG00000112640	115	0	0	108	14	11.48	-	-	-	A	42977068	G	A	42977068	3	1	550	1	0	0	0	0	1	0	0	0	12472	962	34	4	1306	4	PPP2R5D	6	42977068	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7689398	42977068	128137999	325	48387										
AARS2	0	genome.wustl.edu	37	chr6	44279266	44279266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcccaggccatgttacaagCctcctcctgcagcagaaacc	7	16	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	44279266	44279266	C	T	SNP	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	missense	c.442	p.A148T	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	49	0	0	28	42	60	-	-	-	T	44279266	C	T	44279266	3	4	550	1	0	0	0	0	1	0	0	0	20	739	26	4	2595	4	AARS2	6	44279266	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1302198	44279266	126835801	326	48388										
GPR110	0	genome.wustl.edu	37	chr6	46968008	46968008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgatgttgtcggaggaatctCcagtatgagaaaatgcataa	11	5	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	46968008	46968008	C	T	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.2684	p.G895E	0.194	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	190	0	0	125	15	10.71	-	-	-	T	46968008	C	T	46968008	3	4	550	1	0	0	0	0	1	0	0	0	6677	855	30	2	52	2	GPR110	6	46968008	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2688742	46968008	124147059	327	48389										
TFAP2B	0	genome.wustl.edu	37	chr6	50807997	50807997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcactcccgaaagaatatgCtgttggccaccaagtgagtt	10	10	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	50807997	50807997	C	T	SNP	TFAP2B	ENST00000263046	human	ensembl	69_37n	1	known	silent	c.1096	p.L366	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196	180	0	0	135	45	24.86	-	-	-	T	50807997	C	T	50807997	2	4	550	1	0	0	0	0	0	0	0	1	15883	796	28	4		4	TFAP2B	6	50807997	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3839989	50807997	120307070	328	48390										
PKHD1	0	genome.wustl.edu	37	chr6	51768416	51768416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctataacattggtgggactGcagatatagatgccagatgg	12	6	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	51768416	51768416	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.6975	p.C2325	0.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	386	0	0	261	51	16.35	-	-	-	A	51768416	G	A	51768416	2	1	550	1	0	0	0	0	0	0	0	1	12045	1311	46	4		4	PKHD1	6	51768416	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	960419	51768416	119346651	329	48391										
PKHD1	0	genome.wustl.edu	37	chr6	51913411	51913411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcttctgttccttcagtgggCacagagctgtggcacgtcag	12	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	51913411	51913411	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.2286	p.V762	0.810	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	118	0	0	90	36	28.57	-	-	-	T	51913411	C	T	51913411	2	4	550	1	0	0	0	0	0	0	0	1	12045	697	25	4		4	PKHD1	6	51913411	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	144995	51913411	119201656	330	48392										
PAQR8	0	genome.wustl.edu	37	chr6	52268732	52268733	+	Frame_Shift_Ins	INS	-	-	TA													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgtcacctggctggctgccINSaggagcaagcagcctggtac							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	52268732	52268733	-	TA	INS	PAQR8	ENST00000360726	human	ensembl	69_37n	1	known	frame_shift_ins	c.721_722	p.Q241fs	1.000:1.000	pfam_HlyIII-related	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915	111	0	0	102	14	12.07	-	-	-	TA	52268733	-	TA	52268732	7	5	550	1	0	1	1	0	0	0	0	0	11514	595	21	0	723	0	PAQR8	6	52268732	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	355321	52268732	118846335	331	48393										
TINAG	0	genome.wustl.edu	37	chr6	54186106	54186106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctttgcagcacatgctcagGacagcaatggaaatgttccc	9	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	54186106	54186106	G	A	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.431	p.G144E	0.994	NULL	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	141	1	0.7	49	16	24.62	-	-	-	A	54186106	G	A	54186106	3	1	550	1	0	0	0	0	1	0	0	0	16016	1174	41	2	441	2	TINAG	6	54186106	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1917374	54186106	116928961	332	48394										
COL19A1	0	genome.wustl.edu	37	chr6	70916618	70916618	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacttaggctacagaggacaGaagggagaaagaggtgaacc	14	7	0	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	70916618	70916618	G	A	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	silent	c.3237	p.Q1079	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	66	0	0	80	26	24.53	-	-	-	A	70916618	G	A	70916618	2	1	550	1	0	0	0	0	0	0	0	1	3706	933	33	2		2	COL19A1	6	70916618	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	16730512	70916618	100198449	333	48395										
ZNF292	0	genome.wustl.edu	37	chr6	87968186	87968186	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgttataagtggtcctcaGaacacaagatccagtcattt	7	9	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	87968186	87968186	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	silent	c.4839	p.Q1613	0.938	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	134	0	0	125	24	16.11	-	-	-	A	87968186	G	A	87968186	2	1	550	1	0	0	0	0	0	0	0	1	17922	933	33	2		2	ZNF292	6	87968186	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	17051568	87968186	83146881	334	48396										
BACH2	0	genome.wustl.edu	37	chr6	90660493	90660493	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accccagaataagaatgcacCgaggtgctcacttggtcaca	9	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	90660493	90660493	C	T	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	silent	c.1332	p.S444	0.840	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	141	0	0	111	170	60.28	-	-	-	T	90660493	C	T	90660493	2	4	550	1	0	0	0	0	0	0	0	1	1288	639	23	1		1	BACH2	6	90660493	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2692307	90660493	80454574	335	48397										
RTN4IP1	0	genome.wustl.edu	37	chr6	107019899	107019899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cattaattacagtctttcctCgtgcgtgtcctctttccacc	5	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	107019899	107019899	C	T	SNP	RTN4IP1	ENST00000369063	human	ensembl	69_37n	-1	known	missense	c.1163	p.R388Q	1.000	smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347	129	0	0	130	32	19.75	-	-	-	T	107019899	C	T	107019899	3	4	550	1	0	0	0	0	1	0	0	0	13815	884	31	1	31	1	RTN4IP1	6	107019899	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	16359406	107019899	64095168	336	48398										
ARMC2	0	genome.wustl.edu	37	chr6	109197385	109197385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaagaaacagttatgatggGggactctatggtgaaaataa	11	4	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	109197385	109197385	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	missense	c.503	p.G168E	0.155	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	149	0	0	112	75	40.11	-	-	-	A	109197385	G	A	109197385	3	1	550	1	0	0	0	0	1	0	0	0	955	1232	43	4	517	4	ARMC2	6	109197385	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2177486	109197385	61917682	337	48399										
CDK19	0	genome.wustl.edu	37	chr6	110943342	110943342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttaaggaattctcgtttgggGtatggaatctggcagccggc	14	7	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	110943342	110943342	G	A	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	silent	c.1059	p.Y353	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	184	0	0	153	22	12.57	-	-	-	A	110943342	G	A	110943342	2	1	550	1	0	0	0	0	0	0	0	1	3164	1256	44	4		4	CDK19	6	110943342	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1745957	110943342	60171725	338	48400										
CDK19	0	genome.wustl.edu	37	chr6	111136229	111136229	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacccatctttccgcctcgcCttgtagacgtgaccgtaggt	9	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	111136229	111136229	C	T	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	silent	c.111	p.K37	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	24	0	0	25	6	19.35	-	-	-	T	111136229	C	T	111136229	2	4	550	1	0	0	0	0	0	0	0	1	3164	680	24	4		4	CDK19	6	111136229	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	192887	111136229	59978838	339	48401										
NT5DC1	0	genome.wustl.edu	37	chr6	116436853	116436853	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taaaattttgttcttttttaGgaaagtattacttttacgac	5	4	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	116436853	116436853	G	A	SNP	NT5DC1	ENST00000319550	human	ensembl	69_37n	1	known	splice_site	c.365-1	e5-1	1.000	-	-	-	no_errors	NT5DC1	HGNC	ENSG00000178425	83	0	0	75	14	15.56	-	-	-	A	116436853	G	A	116436853	5	1	550	1	0	0	0	0	0	0	1	0	10763	1014	35	4	382	4	NT5DC1	6	116436853	Splice_Site	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5300624	116436853	54678214	340	48402										
RFX6	0	genome.wustl.edu	37	chr6	117237382	117237382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatccagcattttttattaCacttttggcaaggaatgcct	7	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	117237382	117237382	C	T	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.877	p.H293Y	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	252	0	0	172	22	11.34	-	-	-	T	117237382	C	T	117237382	3	4	550	1	0	0	0	0	1	0	0	0	13350	478	17	4	911	4	RFX6	6	117237382	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	800529	117237382	53877685	341	48403										
MAN1A1	0	genome.wustl.edu	37	chr6	119509722	119509722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accaccatcaaatctgaaagCttctggtcccagtttcataa	5	12	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	119509722	119509722	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.1567	p.A523T	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	319	0	0	272	63	18.81	-	-	-	T	119509722	C	T	119509722	3	4	550	1	0	0	0	0	1	0	0	0	9281	797	28	4	406	4	MAN1A1	6	119509722	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2272340	119509722	51605345	342	48404										
L3MBTL3	0	genome.wustl.edu	37	chr6	130425709	130425709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaaatgaaagctcttcttcCcctgaaatcaggtaatcaaa	6	10	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	130425709	130425709	C	T	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	silent	c.1875	p.S625	0.993	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	444	0	0	311	38	10.89	-	-	-	T	130425709	C	T	130425709	2	4	550	1	0	0	0	0	0	0	0	1	8647	610	22	4		4	L3MBTL3	6	130425709	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	10915987	130425709	40689358	343	48405										
TAAR2	0	genome.wustl.edu	37	chr6	132938601	132938601	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcacttgattattttgattTtctcgcaagttattgatggc	7	6	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	132938601	132938601	T	A	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	missense	c.744	p.E248D	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	297	0	0	183	28	13.27	-	-	-	A	132938601	T	A	132938601	3	1	550	1	0	0	0	0	1	0	0	0	15582	1838	64	5	315	5	TAAR2	6	132938601	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	2512892	132938601	38176466	344	48406										
ZC3H12D	0	genome.wustl.edu	37	chr6	149795446	149795446	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agggttctgaagtcctcttcCagggctgtccccgggccacg	13	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	149795446	149795446	C	T	SNP	ZC3H12D	ENST00000389942	human	ensembl	69_37n	-1	known	silent	c.234	p.L78	0.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12D	HGNC	ENSG00000178199	31	0	0	20	4	16.67	-	-	-	T	149795446	C	T	149795446	2	4	550	1	0	0	0	0	0	0	0	1	17660	581	21	4		4	ZC3H12D	6	149795446	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	16856845	149795446	21319621	345	48407										
ULBP2	0	genome.wustl.edu	37	chr6	150267618	150267618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcttcctcctctttgactcaGagaagagaatgtggacaacg	9	10	3	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	150267618	150267618	G	A	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	1	known	missense	c.460	p.E154K	0.002	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	227	0	0	94	30	24.19	-	-	-	A	150267618	G	A	150267618	3	1	550	1	0	0	0	0	1	0	0	0	17070	943	33	2	470	2	ULBP2	6	150267618	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	472172	150267618	20847449	346	48408										
IYD	0	genome.wustl.edu	37	chr6	150719277	150719277	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggccgccccgcacatgaaaaGctgctgatgctgctccccgt	11	16	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	150719277	150719277	G	A	SNP	IYD	ENST00000344419	human	ensembl	69_37n	1	known	silent	c.774	p.K258	1.000	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	-	no_errors	IYD	HGNC	ENSG00000009765	113	0	0	122	15	10.95	-	-	-	A	150719277	G	A	150719277	2	1	550	1	0	0	0	0	0	0	0	1	7986	962	34	4		4	IYD	6	150719277	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	451659	150719277	20395790	347	48409										
SYNJ2	0	genome.wustl.edu	37	chr6	158505058	158505058	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attcttgaagacgatgaagaCtacttggtggatgaattcaa	10	5	2	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	158505058	158505058	C	T	SNP	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	silent	c.3060	p.D1020	0.967	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	340	0	0	283	53	15.73	-	-	-	T	158505058	C	T	158505058	2	4	550	1	0	0	0	0	0	0	0	1	15545	564	20	4		4	SYNJ2	6	158505058	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7785781	158505058	12610009	348	48410										
IGF2R	0	genome.wustl.edu	37	chr6	160494422	160494422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgaggccaggccaaccaataGgcccatgctcatctccctgg	10	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	160494422	160494422	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.4868	p.R1623K	0.774	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	63	0	0	108	26	19.4	-	-	-	A	160494422	G	A	160494422	3	1	550	1	0	0	0	0	1	0	0	0	7630	1000	35	4	5002	4	IGF2R	6	160494422	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1989364	160494422	10620645	349	48411										
IGF2R	0	genome.wustl.edu	37	chr6	160510202	160510202	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgggctgcctgcgccgtgaaGcctcaggaggtgcagatggt	17	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	160510202	160510202	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.6384	p.K2128	1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	54	0	0	53	14	20.9	-	-	-	A	160510202	G	A	160510202	2	1	550	1	0	0	0	0	0	0	0	1	7630	962	34	4		4	IGF2R	6	160510202	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	15780	160510202	10604865	350	48412										
FGFR1OP	0	genome.wustl.edu	37	chr6	167447390	167447390	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catcgctcagagaaaagtgaGataagtattggtgaagagat	12	4	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	6	167447390	167447390	G	A	SNP	FGFR1OP	ENST00000366847	human	ensembl	69_37n	1	known	silent	c.1056	p.E352	0.046	NULL	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	-	no_errors	FGFR1OP	HGNC	ENSG00000213066	174	0	0	108	12	10	-	-	-	A	167447390	G	A	167447390	2	1	550	1	0	0	0	0	0	0	0	1	5910	933	33	2		2	FGFR1OP	6	167447390	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6937188	167447390	3667677	351	48413										
ZFAND2A	0	genome.wustl.edu	37	chr7	1192701	1192701	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagccatcgcagcggagtctCttctcacccagctttgatgg	11	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	1192701	1192701	C	T	SNP	ZFAND2A	ENST00000397083	human	ensembl	69_37n	-1	putative	silent	c.459	p.K153	0.000	NULL	pfam_Znf_AN1,smart_Znf_AN1	-	no_stop_codon:bad_bp_length_for_coding_region	ZFAND2A	HGNC	ENSG00000178381	18	0	0	15	7	31.82	-	-	-	T	1192701	C	T	1192701	2	4	550	1	0	0	0	0	0	0	0	1	17723	928	32	2		2	ZFAND2A	7	1192701	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		1192701	157945962	352	48414										
SDK1	0	genome.wustl.edu	37	chr7	4215434	4215434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagcttcaagacggtgaacaGcagctccacatcgacgatgt	10	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	4215434	4215434	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.4964	p.S1655N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	91	0	0	51	14	21.54	-	-	-	A	4215434	G	A	4215434	3	1	550	1	0	0	0	0	1	0	0	0	14056	971	34	4	5098	4	SDK1	7	4215434	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3022733	4215434	154923229	353	48415										
SCIN	0	genome.wustl.edu	37	chr7	12691524	12691524	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaaaaagaatctctgaagtCtggtaagctcaatcgatgga	10	6	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	12691524	12691524	C	T	SNP	SCIN	ENST00000297029	human	ensembl	69_37n	1	known	missense	c.2018	p.S673F	1.000	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747	47	0	0	24	4	14.29	-	-	-	T	12691524	C	T	12691524	3	4	550	1	0	0	0	0	1	0	0	0	13993	913	32	2	2076	2	SCIN	7	12691524	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	8476090	12691524	146447139	354	48416										
RAPGEF5	0	genome.wustl.edu	37	chr7	22233010	22233010	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctttgtcctggacttcttcCaggtgcaagtcattcaaaag	8	10	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	22233010	22233010	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	69_37n	-1	known	silent	c.720	p.L240	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	12	0	0	18	9	33.33	-	-	-	T	22233010	C	T	22233010	2	4	550	1	0	0	0	0	0	0	0	1	13130	581	21	4		4	RAPGEF5	7	22233010	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	9541486	22233010	136905653	355	48417										
OSBPL3	0	genome.wustl.edu	37	chr7	24874077	24874077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcttggggaccgaggctggaCagtggcaagggaaggctgac	19	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	24874077	24874077	C	T	SNP	OSBPL3	ENST00000409452	human	ensembl	69_37n	-1	known	missense	c.1774	p.V592I	0.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	124	0	0	131	36	21.43	-	-	-	T	24874077	C	T	24874077	3	4	550	1	0	0	0	0	1	0	0	0	11352	493	17	4		4	OSBPL3	7	24874077	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2641067	24874077	134264586	356	48418										
DBNL	0	genome.wustl.edu	37	chr7	44100559	44100559	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctctcagacatggcttcCttattgctggaagaggaggc	11	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	44100559	44100559	C	T	SNP	DBNL	ENST00000497184	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DBNL	HGNC	ENSG00000136279	16	0	0	25	34	57.63	-	-	-	T	44100559	C	T	44100559	1	4	550	0	1	0	0	0	0	0	0	0	4287	696	24	4		4	DBNL	7	44100559	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	19226482	44100559	115038104	357	48419										
AEBP1	0	genome.wustl.edu	37	chr7	44153316	44153316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgacatcggggccactcagtGcaacttcatcctggctcgct	10	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	44153316	44153316	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.2933	p.C978Y	1.000	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	24	0	0	18	12	40	-	-	-	A	44153316	G	A	44153316	3	1	550	1	0	0	0	0	1	0	0	0	349	1319	46	4	3015	4	AEBP1	7	44153316	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	52757	44153316	114985347	358	48420										
ABCA13	0	genome.wustl.edu	37	chr7	48266957	48266957	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttttactgccgagactacaCacaagccatgatcatgtgga	8	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	48266957	48266957	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.567	p.H189	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	328	0	0	264	31	10.51	-	-	-	T	48266957	C	T	48266957	2	4	550	1	0	0	0	0	0	0	0	1	31	477	17	4		4	ABCA13	7	48266957	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4113641	48266957	110871706	359	48421										
IKZF1	0	genome.wustl.edu	37	chr7	50467705	50467705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtcccacgtgatggaccaaGccatcaacaacgccatcaac	7	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	50467705	50467705	G	A	SNP	IKZF1	ENST00000331340	human	ensembl	69_37n	1	known	missense	c.940	p.A314T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811	41	0	0	29	4	12.12	-	-	-	A	50467705	G	A	50467705	3	1	550	1	0	0	0	0	1	0	0	0	7668	971	34	4	966	4	IKZF1	7	50467705	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2200748	50467705	108670958	360	48422										
LANCL2	0	genome.wustl.edu	37	chr7	55492987	55492987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgaaagaggccatggagtGtagcgatgtgatttggcagc	15	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	55492987	55492987	G	A	SNP	LANCL2	ENST00000254770	human	ensembl	69_37n	1	known	missense	c.1049	p.C350Y	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434	90	0	0	178	46	20.54	-	-	-	A	55492987	G	A	55492987	3	1	550	1	0	0	0	0	1	0	0	0	8675	1377	48	4	1075	4	LANCL2	7	55492987	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5025282	55492987	103645676	361	48423										
NSUN5	0	genome.wustl.edu	37	chr7	72717629	72717629	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acccgttcaattacagcaacGaagaagccactgctgagtgt	9	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	72717629	72717629	G	A	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.1254	p.F418	0.607	pfam_Fmu/NOL1/Nop2p,prints_RCMT	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	36	0	0	36	30	45.45	-	-	-	A	72717629	G	A	72717629	2	1	550	1	0	0	0	0	0	0	0	1	10754	1049	37	1		1	NSUN5	7	72717629	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	17224642	72717629	86421034	362	48424										
NSUN5	0	genome.wustl.edu	37	chr7	72718261	72718261	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaggatccagcaggatgtaGtggacctcatggtagcgtgg	16	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	72718261	72718261	G	A	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.900	p.H300	1.000	pfam_Fmu/NOL1/Nop2p,prints_RCMT	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	23	0	0	20	8	28.57	-	-	-	A	72718261	G	A	72718261	2	1	550	1	0	0	0	0	0	0	0	1	10754	1020	36	4		4	NSUN5	7	72718261	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	632	72718261	86420402	363	48425										
PTPN12	0	genome.wustl.edu	37	chr7	77261731	77261731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctgaatcgtttgtgttagCaagtgaacatagtgagtgtc	11	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	77261731	77261731	C	T	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	missense	c.2063	p.A688V	1.000	pirsf_Tyr_Pase_non-rcpt_typ-12	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	133	0	0	104	14	11.86	-	-	-	T	77261731	C	T	77261731	3	4	550	1	0	0	0	0	1	0	0	0	12862	710	25	4	2117	4	PTPN12	7	77261731	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4543470	77261731	81876932	364	48426										
ADAM22	0	genome.wustl.edu	37	chr7	87825800	87825800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgcagctatgggagacatcCatttaagatcaactgtttac	9	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	87825800	87825800	C	T	SNP	ADAM22	ENST00000413139	human	ensembl	69_37n	1	novel	missense	c.787	p.H263Y	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAM22	HGNC	ENSG00000008277	109	0	0	94	27	22.31	-	-	-	T	87825800	C	T	87825800	3	4	550	1	0	0	0	0	1	0	0	0	244	581	21	4	2932	4	ADAM22	7	87825800	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	10564069	87825800	71312863	365	48427										
COL1A2	0	genome.wustl.edu	37	chr7	94053756	94053756	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caggtgttgctggtgctgtgGtgagtgcttgacagtattct	15	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	94053756	94053756	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	splice_site	c.2673+1	e41+1	1.000	-	-	-	no_errors	COL1A2	HGNC	ENSG00000164692	91	0	0	120	26	17.81	-	-	-	A	94053756	G	A	94053756	5	1	550	1	0	0	0	0	0	0	1	0	3708	1275	44	4	2836	4	COL1A2	7	94053756	Splice_Site	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6227956	94053756	65084907	366	48428										
TRRAP	0	genome.wustl.edu	37	chr7	98495372	98495372	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttttatgtagaaccgctaCtttgagaaccctcaagtgat	7	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	98495372	98495372	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	silent	c.516	p.Y172	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	174	0	0	200	25	11.11	-	-	-	T	98495372	C	T	98495372	2	4	550	1	0	0	0	0	0	0	0	1	16697	576	20	4		4	TRRAP	7	98495372	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4441616	98495372	60643291	367	48429										
TRRAP	0	genome.wustl.edu	37	chr7	98540602	98540602	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaagtggatggaagtggtgGtgatcacccacaaagggggc	17	7	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	98540602	98540602	G	A	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	nonsense	c.3579	p.W1193*	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	47	0	0	28	12	30	-	-	-	A	98540602	G	A	98540602	4	1	550	1	0	0	0	0	0	1	0	0	16697	1261	44	4	4553	4	TRRAP	7	98540602	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	45230	98540602	60598061	368	48430										
TRRAP	0	genome.wustl.edu	37	chr7	98555624	98555624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtctttgggaggagccagtcGctacctggagcagactctct	13	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	98555624	98555624	G	A	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.5396	p.R1799H	0.044	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	25	0	0	25	98	79.03	-	-	-	A	98555624	G	A	98555624	3	1	550	1	0	0	0	0	1	0	0	0	16697	1074	38	1	6339	1	TRRAP	7	98555624	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	15022	98555624	60583039	369	48431										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99627539	99627539	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagggtagtcccagagaccaGgcgatggcatctgcactatt	13	10	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	99627539	99627539	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	silent	c.636	p.Q212	0.729	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	121	0	0	179	21	10.5	-	-	-	A	99627539	G	A	99627539	2	1	550	1	0	0	0	0	0	0	0	1	17782	991	35	4		4	ZKSCAN1	7	99627539	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1071915	99627539	59511124	370	48432										
RELN	0	genome.wustl.edu	37	chr7	103205745	103205745	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atggtggagagtggaaggtaGacagtgatccgcttccaatt	14	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	103205745	103205745	G	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	silent	c.5190	p.V1730	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	154	0	0	125	17	11.89	-	-	-	A	103205745	G	A	103205745	2	1	550	1	0	0	0	0	0	0	0	1	13303	929	33	2		2	RELN	7	103205745	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3578206	103205745	55932918	371	48433										
NRCAM	0	genome.wustl.edu	37	chr7	107849983	107849983	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcaaggttttctcaaagttCttataaactgtcctgttttt	6	7	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	107849983	107849983	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	silent	c.957	p.K319	0.995	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	236	0	0	181	36	16.51	-	-	-	T	107849983	C	T	107849983	2	4	550	1	0	0	0	0	0	0	0	1	10717	912	32	2		2	NRCAM	7	107849983	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4644238	107849983	51288680	372	48434										
PPP1R3A	0	genome.wustl.edu	37	chr7	113519950	113519950	+	Silent	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgaaggttgatgtgtacaGtcatctcctgaggaatattt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	113519950	113519950	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	silent	c.1197	p.D399	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	594	0	0	356	40	10.08	-	-	-	A	113519950	G	A	113519950	2	1	550	1	0	0	0	0	0	0	0	1	12448	1020	36	4		4	PPP1R3A	7	113519950	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5669967	113519950	45618713	373	48435	395	3								
PPP1R3A	0	genome.wustl.edu	37	chr7	113519953	113519953	+	Missense_Mutation	SNP	A	A	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaggttgatgtgtacagtcAtctcctgaggaatatttttc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	113519953	113519953	A	C	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.1194	p.D398E	0.014	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	597	0	0	363	41	10.15	-	-	-	C	113519953	A	C	113519953	3	2	550	1	0	0	0	0	1	0	0	0	12448	214	8	5	2178	5	PPP1R3A	7	113519953	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	3	113519953	45618710	374	48436	395	3								
PPP1R3A	0	genome.wustl.edu	37	chr7	113519955	113519956	+	Frame_Shift_Ins	INS	-	-	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggttgatgtgtacagtcatcINStcctgaggaatatttttcat							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	113519955	113519956	-	T	INS	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1192_1191	p.D397fs	0.010:0.014	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	581	0	0	354	41	10.38	-	-	-	T	113519956	-	T	113519955	7	5	550	1	0	1	1	0	0	0	0	0	12448	913	32	0	2180	0	PPP1R3A	7	113519955	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	2	113519955	45618708	375	48437	395	3								
TNPO3	0	genome.wustl.edu	37	chr7	128610208	128610208	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaaacaatcttaccggtctGtcaacctgcatgatctccca	6	13	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	128610208	128610208	G	A	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	silent	c.2694	p.D898	0.996	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	130	0	0	157	40	20.3	-	-	-	A	128610208	G	A	128610208	2	1	550	1	0	0	0	0	0	0	0	1	16432	1368	48	4		4	TNPO3	7	128610208	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	15090253	128610208	30528455	376	48438										
AHCYL2	0	genome.wustl.edu	37	chr7	129037156	129037156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgaagtggctgctgctctaGcagaaagtggtaagagctta	13	6	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	129037156	129037156	G	A	SNP	AHCYL2	ENST00000325006	human	ensembl	69_37n	1	known	missense	c.814	p.A272T	1.000	pfam_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467	43	0	0	62	11	15.07	-	-	-	A	129037156	G	A	129037156	3	1	550	1	0	0	0	0	1	0	0	0	411	971	34	4	954	4	AHCYL2	7	129037156	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	426948	129037156	30101507	377	48439										
TBXAS1	0	genome.wustl.edu	37	chr7	139655293	139655293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caccacagatgtggttgccaGcgtcgcctttggcaccccgg	12	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	139655293	139655293	G	A	SNP	TBXAS1	ENST00000416849	human	ensembl	69_37n	1	known	missense	c.716	p.S239N	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377	184	0	0	232	43	15.64	-	-	-	A	139655293	G	A	139655293	3	1	550	1	0	0	0	0	1	0	0	0	15759	971	34	4	746	4	TBXAS1	7	139655293	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	10618137	139655293	19483370	378	48440										
MGAM	0	genome.wustl.edu	37	chr7	141794561	141794561	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttcagacgggagcagatatCtgtgggttctttcaagatgc	12	7	4	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	141794561	141794561	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.4668	p.I1556	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	109	0	0	65	28	30.11	-	-	-	T	141794561	C	T	141794561	2	4	550	1	0	0	0	0	0	0	0	1	9612	903	32	2		2	MGAM	7	141794561	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2139268	141794561	17344102	379	48441										
FAM131B	0	genome.wustl.edu	37	chr7	143056073	143056073	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggccacccggccttgccccaTggctgtgggctttgtcacat	12	15	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	143056073	143056073	T	G	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.313	p.M105L	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	21	0	0	11	5	31.25	-	-	-	G	143056073	T	G	143056073	3	3	550	1	0	0	0	0	1	0	0	0	5480	1464	51	5	781	5	FAM131B	7	143056073	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1261512	143056073	16082590	380	48442										
CNTNAP2	0	genome.wustl.edu	37	chr7	147336229	147336229	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggaccatagtgtctcatgaCttgcagatgcagacgcctgt	11	10	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	147336229	147336229	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	silent	c.1929	p.D643	0.997	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	232	0	0	180	44	19.64	-	-	-	T	147336229	C	T	147336229	2	4	550	1	0	0	0	0	0	0	0	1	3677	564	20	4		4	CNTNAP2	7	147336229	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4280156	147336229	11802434	381	48443										
ZNF777	0	genome.wustl.edu	37	chr7	149152289	149152289	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgggaacttctccattgctGccggggggcagccgcaggat	15	11	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	149152289	149152289	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	silent	c.825	p.G275	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	90	0	0	100	86	44.79	-	-	-	A	149152289	G	A	149152289	2	1	550	1	0	0	0	0	0	0	0	1	18243	1306	46	4		4	ZNF777	7	149152289	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1816060	149152289	9986374	382	48444										
NOM1	0	genome.wustl.edu	37	chr7	156758977	156758977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttctaggcttggacttaagGatcagcaggagagagaaatc	12	6	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	156758977	156758977	G	A	SNP	NOM1	ENST00000275820	human	ensembl	69_37n	1	known	missense	c.2047	p.D683N	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909	219	0	0	106	12	10.17	-	-	-	A	156758977	G	A	156758977	3	1	550	1	0	0	0	0	1	0	0	0	10602	1174	41	2	2077	2	NOM1	7	156758977	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7606688	156758977	2379686	383	48445										
NCAPG2	0	genome.wustl.edu	37	chr7	158449384	158449384	+	Missense_Mutation	SNP	A	A	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcccggcttctcagcgtggAaatcacaccacagctgaaaa							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	158449384	158449384	A	C	SNP	NCAPG2	ENST00000409339	human	ensembl	69_37n	-1	known	missense	c.2074	p.S692A	1.000	pfam_Condensin2_G2	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918	51	0	0	31	21	40.38	-	-	-	C	158449384	A	C	158449384	3	2	550	1	0	0	0	0	1	0	0	0	10280	246	9	5	1401	5	NCAPG2	7	158449384	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1690407	158449384	689279	384	48446	396	2								
NCAPG2	0	genome.wustl.edu	37	chr7	158449385	158449385	+	Missense_Mutation	SNP	A	A	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcccggcttctcagcgtggaAatcacaccacagctgaaaat							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	7	158449385	158449385	A	C	SNP	NCAPG2	ENST00000409339	human	ensembl	69_37n	-1	known	missense	c.2073	p.I691M	0.993	pfam_Condensin2_G2	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918	51	0	0	33	19	36.54	-	-	-	C	158449385	A	C	158449385	3	2	550	1	0	0	0	0	1	0	0	0	10280	10	1	5	1402	5	NCAPG2	7	158449385	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1	158449385	689278	385	48447	396	2								
RP1L1	0	genome.wustl.edu	37	chr8	10470385	10470385	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggcatgcaggggattcgtcCagatttcatacttgggccct	12	10	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	10470385	10470385	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	nonsense	c.1223	p.W408*	1.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	21	0	0	19	28	59.57	-	-	-	T	10470385	C	T	10470385	4	4	550	1	0	0	0	0	0	1	0	0	13619	595	21	4	5983	4	RP1L1	8	10470385	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		10470385	135893637	386	48448										
VPS37A	0	genome.wustl.edu	37	chr8	17142113	17142113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gattttctcagtagcttcatGgaaaagagaacagtatgtaa	9	5	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	17142113	17142113	G	A	SNP	VPS37A	ENST00000324849	human	ensembl	69_37n	1	known	missense	c.1101	p.M367I	1.000	pfam_Mod_r	pfam_Mod_r,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	VPS37A	HGNC	ENSG00000155975	204	0	0	123	50	28.9	-	-	-	A	17142113	G	A	17142113	3	1	550	1	0	0	0	0	1	0	0	0	17302	1348	47	4	1139	4	VPS37A	8	17142113	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6671728	17142113	129221909	387	48449										
NAT1	0	genome.wustl.edu	37	chr8	18080025	18080025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccgtttgacggaagagaatGgattctggtatctagaccaa	11	7	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	18080025	18080025	G	A	SNP	NAT1	ENST00000545197	human	ensembl	69_37n	1	known	missense	c.655	p.G219R	0.010	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT1	HGNC	ENSG00000171428	283	0	0	194	94	32.53	-	-	-	A	18080025	G	A	18080025	3	1	550	1	0	0	0	0	1	0	0	0	10245	1349	47	4	665	4	NAT1	8	18080025	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	937912	18080025	128283997	388	48450										
PSD3	0	genome.wustl.edu	37	chr8	18729656	18729656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggctcctgcacacagacagCccctttcctcccattattca	5	17	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	18729656	18729656	C	T	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	missense	c.718	p.A240T	0.006	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	225	0	0	166	39	19.02	-	-	-	T	18729656	C	T	18729656	3	4	550	1	0	0	0	0	1	0	0	0	12728	739	26	4	2517	4	PSD3	8	18729656	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	649631	18729656	127634366	389	48451										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37732546	37732546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagacagcccacctccttcaGcaggctccttccaagaccca	6	18	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	37732546	37732546	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.1109	p.A370V	0.291	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	148	0	0	180	34	15.89	-	-	-	A	37732546	G	A	37732546	3	1	550	1	0	0	0	0	1	0	0	0	12976	971	34	4	2758	4	RAB11FIP1	8	37732546	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	19002890	37732546	108631476	390	48452										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37735006	37735006	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgtttctcataaactggatGtcaacctcaatttctcctcg	5	11	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	37735006	37735006	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	silent	c.435	p.D145	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	241	0	0	183	23	11.17	-	-	-	A	37735006	G	A	37735006	2	1	550	1	0	0	0	0	0	0	0	1	12976	1368	48	4		4	RAB11FIP1	8	37735006	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2460	37735006	108629016	391	48453										
BAG4	0	genome.wustl.edu	37	chr8	38067576	38067576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaagcatgaaccggcacaaCtttccttgcagtgtccatca	7	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	38067576	38067576	C	T	SNP	BAG4	ENST00000287322	human	ensembl	69_37n	1	known	silent	c.939	p.N313	0.999	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735	230	0	0	204	40	16.39	-	-	-	T	38067576	C	T	38067576	2	4	550	1	0	0	0	0	0	0	0	1	1293	564	20	4		4	BAG4	8	38067576	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	332570	38067576	108296446	392	48454										
FGFR1	0	genome.wustl.edu	37	chr8	38277218	38277218	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgatgatctccaggtacaGgggcgaggtcatcactgccg	14	10	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	38277218	38277218	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.1210	p.L404	0.140	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	48	0	0	21	6	22.22	-	-	-	A	38277218	G	A	38277218	2	1	550	1	0	0	0	0	0	0	0	1	5909	991	35	4		4	FGFR1	8	38277218	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	209642	38277218	108086804	393	48455										
TACC1	0	genome.wustl.edu	37	chr8	38677846	38677846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagatggcatcagtaagtcaGcaggtttagaacagcctaca	10	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	38677846	38677846	G	A	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	missense	c.1084	p.A362T	0.005	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	239	0	0	186	164	46.86	-	-	-	A	38677846	G	A	38677846	3	1	550	1	0	0	0	0	1	0	0	0	15593	971	34	4	1094	4	TACC1	8	38677846	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	400628	38677846	107686176	394	48456										
ANK1	0	genome.wustl.edu	37	chr8	41572499	41572499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agggttcaaactcacttttcCggcagcattcgggtgtgcgt	12	10	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	41572499	41572499	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.1696	p.G566R	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	52	0	0	32	14	30.43	-	-	-	T	41572499	C	T	41572499	3	4	550	1	0	0	0	0	1	0	0	0	620	661	23	1	4415	1	ANK1	8	41572499	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2894653	41572499	104791523	395	48457										
KIAA0146	0	genome.wustl.edu	37	chr8	48625314	48625314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggaggagagagaccccaggCtccccaaaaccctgctggtc	12	14	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	48625314	48625314	C	T	SNP	KIAA0146	ENST00000297423	human	ensembl	69_37n	1	known	missense	c.2068	p.L690F	0.870	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	86	0	0	78	13	14.29	-	-	-	T	48625314	C	T	48625314	3	4	550	1	0	0	0	0	1	0	0	0	8209	797	28	4	2126	4	KIAA0146	8	48625314	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7052815	48625314	97738708	396	48458										
ATP6V1H	0	genome.wustl.edu	37	chr8	54656217	54656217	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcatgatgcatgtggttcatGaccagctgcttcccaccgag	10	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	54656217	54656217	G	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	69_37n	-1	known	silent	c.1311	p.V437	0.063	pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249	36	0	0	23	8	25.81	-	-	-	A	54656217	G	A	54656217	2	1	550	1	0	0	0	0	0	0	0	1	1193	1277	45	2		2	ATP6V1H	8	54656217	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6030903	54656217	91707805	397	48459										
TGS1	0	genome.wustl.edu	37	chr8	56723574	56723574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttttttaaaggctgatgttGtgttcctcagcccaccttgg	9	10	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	56723574	56723574	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.2278	p.V760M	1.000	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	167	0	0	276	44	13.75	-	-	-	A	56723574	G	A	56723574	3	1	550	1	0	0	0	0	1	0	0	0	15932	1377	48	4	2320	4	TGS1	8	56723574	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2067357	56723574	89640448	398	48460										
CHD7	0	genome.wustl.edu	37	chr8	61769167	61769167	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggacaagaaaaagttgtagAtttatcaaaggcctcaagag	10	5	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	61769167	61769167	A	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.7328	p.D2443A	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	133	0	0	146	88	37.61	-	-	-	C	61769167	A	C	61769167	3	2	550	1	0	0	0	0	1	0	0	0	3359	333	12	5	7458	5	CHD7	8	61769167	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	5045593	61769167	84594855	399	48461										
PRDM14	0	genome.wustl.edu	37	chr8	70980764	70980764	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagtttgaggaagagaatcaGatcctagcaaaaggcaggtt	13	5	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	70980764	70980764	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	missense	c.704	p.S235F	0.001	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	51	0	0	44	17	27.87	-	-	-	A	70980764	G	A	70980764	3	1	550	1	0	0	0	0	1	0	0	0	12536	942	33	2	1035	2	PRDM14	8	70980764	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	9211597	70980764	75383258	400	48462										
KCNB2	0	genome.wustl.edu	37	chr8	73849557	73849557	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccgtttctaactctatccaGagagaaaggacctgctgcca	8	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	73849557	73849557	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	missense	c.1967	p.R656K	0.996	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	149	0	0	123	22	15.07	-	-	-	A	73849557	G	A	73849557	3	1	550	1	0	0	0	0	1	0	0	0	8067	942	33	2	1973	2	KCNB2	8	73849557	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2868793	73849557	72514465	401	48463										
NECAB1	0	genome.wustl.edu	37	chr8	91893308	91893308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgagaatgtactagcagcaCttgaagacctgaatctttcc	8	9	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	91893308	91893308	C	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	missense	c.307	p.L103F	1.000	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	43	0	0	27	20	42.55	-	-	-	T	91893308	C	T	91893308	3	4	550	1	0	0	0	0	1	0	0	0	10376	565	20	4	325	4	NECAB1	8	91893308	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	18043751	91893308	54470714	402	48464										
RUNX1T1	0	genome.wustl.edu	37	chr8	93088282	93088282	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcttttgacagatatcattCtccaccaatcgctctgctaa	4	12	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	93088282	93088282	C	T	SNP	RUNX1T1	ENST00000518256	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	263	0	0	229	37	13.91	-	-	-	T	93088282	C	T	93088282	1	4	550	0	1	0	0	0	0	0	0	0	13833	928	32	2		2	RUNX1T1	8	93088282	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1194974	93088282	53275740	403	48465										
PDP1	0	genome.wustl.edu	37	chr8	94935128	94935128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgtgtggcccatgtggatGgtgttgaccttcatgtggcc	14	9	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	94935128	94935128	G	A	SNP	PDP1	ENST00000396200	human	ensembl	69_37n	1	known	missense	c.916	p.G306S	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PDP1	HGNC	ENSG00000164951	73	0	0	120	19	13.67	-	-	-	A	94935128	G	A	94935128	3	1	550	1	0	0	0	0	1	0	0	0	11758	1348	47	4	1024	4	PDP1	8	94935128	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1846846	94935128	51428894	404	48466										
CCNE2	0	genome.wustl.edu	37	chr8	95902673	95902673	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagtctagaagtatggacctCatctgtggttccaagtcaga	10	9	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	95902673	95902673	C	T	SNP	CCNE2	ENST00000308108	human	ensembl	69_37n	-1	known	missense	c.423	p.M141I	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305	235	0	0	195	48	19.67	-	-	-	T	95902673	C	T	95902673	3	4	550	1	0	0	0	0	1	0	0	0	2950	826	29	2	819	2	CCNE2	8	95902673	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	967545	95902673	50461349	405	48467										
CCNE2	0	genome.wustl.edu	37	chr8	95906149	95906149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tactgatgtttcttggtgacCtcctctcttctttttttgac	6	10	3	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	95906149	95906149	C	T	SNP	CCNE2	ENST00000519889	human	ensembl	69_37n	-1	known	missense	c.163	p.G55S	0.260	NULL	NULL	-	no_errors	CCNE2	HGNC	ENSG00000175305	226	0	0	187	29	13.43	-	-	-	T	95906149	C	T	95906149	3	4	550	1	0	0	0	0	1	0	0	0	2950	680	24	4	1115	4	CCNE2	8	95906149	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3476	95906149	50457873	406	48468										
VPS13B	0	genome.wustl.edu	37	chr8	100791056	100791056	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggagatccagttcttagctCaagcagactgtaaacttcta	8	9	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	100791056	100791056	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	nonsense	c.7651	p.Q2551*	0.968	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	188	0	0	129	17	11.64	-	-	-	T	100791056	C	T	100791056	4	4	550	1	0	0	0	0	0	1	0	0	17287	827	29	2	8007	2	VPS13B	8	100791056	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4884907	100791056	45572966	407	48469										
UBR5	0	genome.wustl.edu	37	chr8	103324594	103324594	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aattcatcaattctaagtaaCctacaatcctgcaggagaga	6	9	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	103324594	103324594	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.2127	p.R709	0.995	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	127	1	0.78	75	16	17.58	-	-	-	T	103324594	C	T	103324594	2	4	550	1	0	0	0	0	0	0	0	1	17002	506	18	4		4	UBR5	8	103324594	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2533538	103324594	43039428	408	48470										
UBR5	0	genome.wustl.edu	37	chr8	103324645	103324645	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcatctggaccagagctgttCtgacagttagtattactgga	11	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	103324645	103324645	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.2076	p.Q692	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	130	0	0	76	14	15.56	-	-	-	T	103324645	C	T	103324645	2	4	550	1	0	0	0	0	0	0	0	1	17002	912	32	2		2	UBR5	8	103324645	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	51	103324645	43039377	409	48471										
CSMD3	0	genome.wustl.edu	37	chr8	113349820	113349820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attacgactgactccgtgaaGgcatgtgagagctgaatttc	11	8	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	113349820	113349820	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.6793	p.L2265F	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	148	0	0	106	28	20.9	-	-	-	A	113349820	G	A	113349820	3	1	550	1	0	0	0	0	1	0	0	0	3978	1000	35	4	4446	4	CSMD3	8	113349820	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	10025175	113349820	33014202	410	48472										
TAF2	0	genome.wustl.edu	37	chr8	120805649	120805649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaatatgggatgtagtaaaaCcccaccagtttttagttcat	7	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	120805649	120805649	C	T	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	missense	c.1234	p.V412I	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	143	0	0	95	22	18.8	-	-	-	T	120805649	C	T	120805649	3	4	550	1	0	0	0	0	1	0	0	0	15616	507	18	4	2433	4	TAF2	8	120805649	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7455829	120805649	25558373	411	48473										
TAF2	0	genome.wustl.edu	37	chr8	120810087	120810087	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcaaacaaaaatgagtaacCtgaaaagaagaagcaaggaa	10	5	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	120810087	120810087	C	T	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	splice_site	c.793-1	e7-1	1.000	-	-	-	no_errors	TAF2	HGNC	ENSG00000064313	127	0	0	125	30	19.35	-	-	-	T	120810087	C	T	120810087	5	4	550	1	0	0	0	0	0	0	1	0	15616	695	24	4	2887	4	TAF2	8	120810087	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4438	120810087	25553935	412	48474										
COL14A1	0	genome.wustl.edu	37	chr8	121256245	121256245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgtctccgctcctggaaaaaCctgtaagtgaagctttctcc	8	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	121256245	121256245	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.2477	p.T826I	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	282	0	0	247	32	11.43	-	-	-	T	121256245	C	T	121256245	3	4	550	1	0	0	0	0	1	0	0	0	3701	507	18	4	2551	4	COL14A1	8	121256245	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	446158	121256245	25107777	413	48475										
COL14A1	0	genome.wustl.edu	37	chr8	121298139	121298139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atatttcaactatgaccagaGtggggattttcaaactgtta	8	6	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	121298139	121298139	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.4007	p.S1336N	0.981	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	235	0	0	168	151	47.34	-	-	-	A	121298139	G	A	121298139	3	1	550	1	0	0	0	0	1	0	0	0	3701	1029	36	4	4133	4	COL14A1	8	121298139	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	41894	121298139	25065883	414	48476										
KLHL38	0	genome.wustl.edu	37	chr8	124664946	124664946	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caatgcctttcagctgcactTtggcttcactcttctcccgg	7	15	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	124664946	124664946	T	A	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.221	p.K74I	0.075	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	119	0	0	73	41	35.96	-	-	-	A	124664946	T	A	124664946	3	1	550	1	0	0	0	0	1	0	0	0	8443	1841	64	5	1536	5	KLHL38	8	124664946	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	3366807	124664946	21699076	415	48477										
MTSS1	0	genome.wustl.edu	37	chr8	125568030	125568030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcagggggtggttgtctggGtgctgtagccgctggagcac	19	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	125568030	125568030	G	A	SNP	MTSS1	ENST00000518547	human	ensembl	69_37n	-1	known	missense	c.1520	p.T507I	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873	13	0	0	16	8	33.33	-	-	-	A	125568030	G	A	125568030	3	1	550	1	0	0	0	0	1	0	0	0	10034	1261	44	4	755	4	MTSS1	8	125568030	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	903084	125568030	20795992	416	48478										
KIAA0196	0	genome.wustl.edu	37	chr8	126069823	126069823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcacataggataccaactctCcagaatagtactgtgacacg	7	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	126069823	126069823	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	missense	c.1850	p.G617E	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	72	0	0	71	22	23.66	-	-	-	T	126069823	C	T	126069823	3	4	550	1	0	0	0	0	1	0	0	0	8213	855	30	2	1689	2	KIAA0196	8	126069823	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	501793	126069823	20294199	417	48479										
KIAA0196	0	genome.wustl.edu	37	chr8	126096005	126096005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccatatttctgttgatcagCtctgtcttttaacctgaaca	5	10	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	126096005	126096005	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	missense	c.136	p.A46T	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	43	0	0	46	6	11.54	-	-	-	T	126096005	C	T	126096005	3	4	550	1	0	0	0	0	1	0	0	0	8213	797	28	4	3455	4	KIAA0196	8	126096005	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	26182	126096005	20268017	418	48480										
GSDMC	0	genome.wustl.edu	37	chr8	130789691	130789691	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtcagattgttcccaaaatGatgaacgagaatccttcttc	7	9	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	130789691	130789691	G	A	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	missense	c.143	p.S48L	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	183	0	0	133	68	33.83	-	-	-	A	130789691	G	A	130789691	3	1	550	1	0	0	0	0	1	0	0	0	6869	1294	45	2	1435	2	GSDMC	8	130789691	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4693686	130789691	15574331	419	48481										
NDRG1	0	genome.wustl.edu	37	chr8	134256607	134256607	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atggcactcacctgggagatCtgcgggaggccgccacagtc	14	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	134256607	134256607	C	T	SNP	NDRG1	ENST00000323851	human	ensembl	69_37n	-1	known	silent	c.882	p.Q294	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	48	0	0	30	38	55.88	-	-	-	T	134256607	C	T	134256607	2	4	550	1	0	0	0	0	0	0	0	1	10323	912	32	2		2	NDRG1	8	134256607	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3466916	134256607	12107415	420	48482										
ZFAT	0	genome.wustl.edu	37	chr8	135621014	135621014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cataaggtgtctgctgaatgGcgtattcctggtagcctctc	11	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	135621014	135621014	G	A	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	missense	c.743	p.A248V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	173	0	0	108	30	21.74	-	-	-	A	135621014	G	A	135621014	3	1	550	1	0	0	0	0	1	0	0	0	17728	1203	42	4	3036	4	ZFAT	8	135621014	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1364407	135621014	10743008	421	48483										
DENND3	0	genome.wustl.edu	37	chr8	142161047	142161047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcttcaggcctgagaaggtgCtacaggtacgcggccccgcc	14	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	142161047	142161047	C	T	SNP	DENND3	ENST00000518668	human	ensembl	69_37n	1	novel	missense	c.779	p.A260V	0.978	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DENND3	HGNC	ENSG00000105339	52	0	0	75	35	31.82	-	-	-	T	142161047	C	T	142161047	3	4	550	1	0	0	0	0	1	0	0	0	4468	796	28	4	628	4	DENND3	8	142161047	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6540033	142161047	4202975	422	48484										
CPSF1	0	genome.wustl.edu	37	chr8	145634420	145634420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcggcgtcgcggttgaggcgGtacacgtagagctgcgaggt	18	9	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	8	145634420	145634420	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	silent	c.123	p.Y41	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	17	0	0	12	16	57.14	-	-	-	A	145634420	G	A	145634420	2	1	550	1	0	0	0	0	0	0	0	1	3854	1256	44	4		4	CPSF1	8	145634420	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3473373	145634420	729602	423	48485										
KANK1	0	genome.wustl.edu	37	chr9	732604	732604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatgtgaacctgagaaggtgGaaatcagagagaggtgtggt	16	3	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	732604	732604	G	A	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	missense	c.3232	p.E1078K	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	171	0	0	171	95	35.71	-	-	-	A	732604	G	A	732604	3	1	550	1	0	0	0	0	1	0	0	0	8030	1175	41	2	3250	2	KANK1	9	732604	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		732604	140480827	424	48486										
BNC2	0	genome.wustl.edu	37	chr9	16435795	16435795	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcatgcaaggcggccatgctGgcacccccaccattgtacag	10	15	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	16435795	16435795	G	A	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	silent	c.2397	p.A799	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	137	0	0	108	52	32.3	-	-	-	A	16435795	G	A	16435795	2	1	550	1	0	0	0	0	0	0	0	1	1480	1335	47	4		4	BNC2	9	16435795	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	15703191	16435795	124777636	425	48487										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18829922	18829922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaccttccttcagtgctgaCgtctcctctgggaacacagc	9	14	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	18829922	18829922	C	T	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	1	known	missense	c.299	p.T100M	0.946	pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	133	0	0	96	20	17.24	-	-	-	T	18829922	C	T	18829922	3	4	550	1	0	0	0	0	1	0	0	0	274	536	19	1	4290	1	ADAMTSL1	9	18829922	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2394127	18829922	122383509	426	48488										
PRUNE2	0	genome.wustl.edu	37	chr9	79320666	79320666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagaggagccctttatgtctGcttgatagccaattggaggc	13	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	79320666	79320666	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.5447	p.A1816V	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	114	0	0	109	93	46.04	-	-	-	A	79320666	G	A	79320666	3	1	550	1	0	0	0	0	1	0	0	0	12721	1319	46	4	2790	4	PRUNE2	9	79320666	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	60490744	79320666	61892765	427	48489										
PRUNE2	0	genome.wustl.edu	37	chr9	79461546	79461546	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acgttggcatcgctctgctcAaccggattaatgactttgac	9	11	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	79461546	79461546	A	T	SNP	PRUNE2	ENST00000376718	human	ensembl	69_37n	-1	novel	silent	c.393	p.V131	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	173	0	0	82	15	15.46	-	-	-	T	79461546	A	T	79461546	2	4	550	1	0	0	0	0	0	0	0	1	12721	117	5	5		5	PRUNE2	9	79461546	Silent	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	140880	79461546	61751885	428	48490										
FRMD3	0	genome.wustl.edu	37	chr9	85958184	85958184	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgaaaaatgtcccttttaatCtgaaggtataaaaggtatct	7	5	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	85958184	85958184	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	silent	c.393	p.Q131	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	103	0	0	75	26	25.74	-	-	-	T	85958184	C	T	85958184	2	4	550	1	0	0	0	0	0	0	0	1	6099	912	32	2		2	FRMD3	9	85958184	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6496638	85958184	55255247	429	48491										
KIF27	0	genome.wustl.edu	37	chr9	86474193	86474193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatctttgttttctcctcagCtgtactggtctggagctgca	9	10	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	86474193	86474193	C	T	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.3028	p.A1010T	0.998	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	194	1	0.51	188	53	21.99	-	-	-	T	86474193	C	T	86474193	3	4	550	1	0	0	0	0	1	0	0	0	8348	797	28	4	1197	4	KIF27	9	86474193	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	516009	86474193	54739238	430	48492										
HABP4	0	genome.wustl.edu	37	chr9	99252357	99252357	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaccgcggagctgcactgCacacctgtggggagactttt	13	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	99252357	99252357	C	T	SNP	HABP4	ENST00000466976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HABP4	HGNC	ENSG00000130956	53	0	0	38	72	65.45	-	-	-	T	99252357	C	T	99252357	1	4	550	0	1	0	0	0	0	0	0	0	6990	725	25	4		4	HABP4	9	99252357	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	12778164	99252357	41961074	431	48493										
ZNF782	0	genome.wustl.edu	37	chr9	99580394	99580394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctccccggtgtgagttcgCtgatgttttcttaggactga	11	9	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	99580394	99580394	C	T	SNP	ZNF782	ENST00000289032	human	ensembl	69_37n	-1	putative	missense	c.1876	p.A626T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF782	HGNC	ENSG00000196597	411	0	0	600	79	11.6	-	-	-	T	99580394	C	T	99580394	3	4	550	1	0	0	0	0	1	0	0	0	18248	796	28	4	192	4	ZNF782	9	99580394	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	328037	99580394	41633037	432	48494										
TBC1D2	0	genome.wustl.edu	37	chr9	100995809	100995809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccctgggcctgcttgttgcCacggatgttgtgcattgtgt	13	10	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	100995809	100995809	C	T	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.670	p.G224S	0.958	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	104	0	0	99	107	51.94	-	-	-	T	100995809	C	T	100995809	3	4	550	1	0	0	0	0	1	0	0	0	15700	594	21	4	2123	4	TBC1D2	9	100995809	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1415415	100995809	40217622	433	48495										
ANKS6	0	genome.wustl.edu	37	chr9	101530389	101530389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aacaggagcgctgccacctgCaggggaggctggaagctcag	16	11	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	101530389	101530389	C	T	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	missense	c.2116	p.A706T	0.003	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	30	0	0	28	6	17.65	-	-	-	T	101530389	C	T	101530389	3	4	550	1	0	0	0	0	1	0	0	0	691	710	25	4	519	4	ANKS6	9	101530389	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	534580	101530389	39683042	434	48496										
RGS3	0	genome.wustl.edu	37	chr9	116269578	116269578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accttccaggagctgccccaGtgagatcatcctactcgtgt	9	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	116269578	116269578	G	A	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	missense	c.1097	p.S366N	0.045	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	23	0	0	14	30	68.18	-	-	-	A	116269578	G	A	116269578	3	1	550	1	0	0	0	0	1	0	0	0	13390	1029	36	4	1288	4	RGS3	9	116269578	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	14739189	116269578	24943853	435	48497										
RGS3	0	genome.wustl.edu	37	chr9	116346018	116346018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaccccctccagcccaagacCtctcaccctgccaggaccta	5	21	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	116346018	116346018	C	A	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	missense	c.2326	p.L776I	0.005	NULL	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	131	0	0	86	17	16.5	-	-	-	A	116346018	C	A	116346018	3	1	550	1	0	0	0	0	1	0	0	0	13390	681	24	4	2657	4	RGS3	9	116346018	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	76440	116346018	24867413	436	48498										
PAPPA	0	genome.wustl.edu	37	chr9	118969820	118969820	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttttctttgcaaaatcctcaGaggaggagttggcaggagta	12	6	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	118969820	118969820	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.1564	p.E522K	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	215	0	0	201	66	24.72	-	-	-	A	118969820	G	A	118969820	3	1	550	1	0	0	0	0	1	0	0	0	11505	943	33	2	1574	2	PAPPA	9	118969820	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2623802	118969820	22243611	437	48499										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123165143	123165143	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgggtttgaatgtccatttCagcaaggagcctctgtccct	10	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	123165143	123165143	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.5248	p.E1750K	0.952	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	88	0	0	54	14	20.59	-	-	-	T	123165143	C	T	123165143	3	4	550	1	0	0	0	0	1	0	0	0	3175	835	29	2	453	2	CDK5RAP2	9	123165143	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4195323	123165143	18048288	438	48500										
FBXW2	0	genome.wustl.edu	37	chr9	123526846	123526846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctcatggtgtcagccgtgCtccttccacaacaccaggtg	11	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	123526846	123526846	C	T	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	silent	c.1356	p.E452	0.997	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	136	0	0	178	34	16.04	-	-	-	T	123526846	C	T	123526846	2	4	550	1	0	0	0	0	0	0	0	1	5812	796	28	4		4	FBXW2	9	123526846	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	361703	123526846	17686585	439	48501										
TRAF1	0	genome.wustl.edu	37	chr9	123675773	123675773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagcttctccttcatgaagtGctgcagggccagctcctcct	9	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	123675773	123675773	G	A	SNP	TRAF1	ENST00000373887	human	ensembl	69_37n	-1	known	missense	c.538	p.H180Y	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	-	no_errors	TRAF1	HGNC	ENSG00000056558	33	0	0	67	19	21.84	-	-	-	A	123675773	G	A	123675773	3	1	550	1	0	0	0	0	1	0	0	0	16533	1319	46	4	728	4	TRAF1	9	123675773	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	148927	123675773	17537658	440	48502										
C5	0	genome.wustl.edu	37	chr9	123794434	123794434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcggttccagttgttgaaaaGtcctctttatatttagcctt	8	8	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	123794434	123794434	G	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	silent	c.624	p.D208	1.000	pfam_A2M_N	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	163	0	0	116	28	19.44	-	-	-	A	123794434	G	A	123794434	2	1	550	1	0	0	0	0	0	0	0	1	2301	1020	36	4		4	C5	9	123794434	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	118661	123794434	17418997	441	48503										
GSN	0	genome.wustl.edu	37	chr9	124079489	124079489	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaagatgggaaaatctttgtCtggaaaggtactggagacag	13	4	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	124079489	124079489	C	T	SNP	GSN	ENST00000373818	human	ensembl	69_37n	1	known	silent	c.1032	p.V344	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180	115	0	0	109	27	19.85	-	-	-	T	124079489	C	T	124079489	2	4	550	1	0	0	0	0	0	0	0	1	6876	900	32	2		2	GSN	9	124079489	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	285055	124079489	17133942	442	48504										
STRBP	0	genome.wustl.edu	37	chr9	125920691	125920691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggtctcgctcacaaggatCatgaagaccaggaccccctt	10	13	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	125920691	125920691	C	T	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	missense	c.853	p.D285N	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	303	0	0	204	39	16.05	-	-	-	T	125920691	C	T	125920691	3	4	550	1	0	0	0	0	1	0	0	0	15418	826	29	2	1205	2	STRBP	9	125920691	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1841202	125920691	15292740	443	48505										
ARPC5L	0	genome.wustl.edu	37	chr9	127637407	127637407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccacagaaaatagcagcgcaGtgttactccagtggcacgaa	10	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	127637407	127637407	G	A	SNP	ARPC5L	ENST00000259477	human	ensembl	69_37n	1	known	missense	c.376	p.V126M	0.998	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5L	HGNC	ENSG00000136950	43	0	0	47	18	27.69	-	-	-	A	127637407	G	A	127637407	3	1	550	1	0	0	0	0	1	0	0	0	979	1029	36	4	386	4	ARPC5L	9	127637407	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1716716	127637407	13576024	444	48506										
CDK9	0	genome.wustl.edu	37	chr9	130550296	130550296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcgagcatgaccttgctggGctgttgagcaatgttttggt	14	7	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	130550296	130550296	G	A	SNP	CDK9	ENST00000373265	human	ensembl	69_37n	1	known	silent	c.687	p.G229	0.925	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK9	HGNC	ENSG00000136807	44	0	0	28	5	15.15	-	-	-	A	130550296	G	A	130550296	2	1	550	1	0	0	0	0	0	0	0	1	3180	1190	42	4		4	CDK9	9	130550296	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2912889	130550296	10663135	445	48507										
FPGS	0	genome.wustl.edu	37	chr9	130575648	130575648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gccccacccaccccacacctGcagtgccagctccctcgtct	6	23	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	130575648	130575648	G	A	SNP	FPGS	ENST00000373247	human	ensembl	69_37n	1	known	missense	c.1529	p.C510Y	0.000	tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877	42	0	0	22	5	18.52	-	-	-	A	130575648	G	A	130575648	3	1	550	1	0	0	0	0	1	0	0	0	6084	1319	46	4	1587	4	FPGS	9	130575648	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	25352	130575648	10637783	446	48508										
SPTAN1	0	genome.wustl.edu	37	chr9	131360679	131360679	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttatggcttttgctttaaagGacctgaaggccaatgagtca	10	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	131360679	131360679	G	C	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.3415	p.D1139H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	35	0	0	28	12	30	-	-	-	C	131360679	G	C	131360679	3	2	550	1	0	0	0	0	1	0	0	0	15208	1188	41	2	3509	2	SPTAN1	9	131360679	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	785031	131360679	9852752	447	48509										
NUP188	0	genome.wustl.edu	37	chr9	131764196	131764196	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggctggagctggcatcaccCagagcatttgtttgcccctt	11	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	131764196	131764196	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	nonsense	c.4078	p.Q1360*	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	50	0	0	41	5	10.87	-	-	-	T	131764196	C	T	131764196	4	4	550	1	0	0	0	0	0	1	0	0	10831	595	21	4	4220	4	NUP188	9	131764196	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	403517	131764196	9449235	448	48510										
SURF1	0	genome.wustl.edu	37	chr9	136220650	136220650	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaccacataggccccactctGagttgaggaggagatgaggc	14	10	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	136220650	136220650	G	A	SNP	SURF1	ENST00000371974	human	ensembl	69_37n	-1	known	nonsense	c.469	p.Q157*	0.971	pfam_Surf1,pfscan_Surf1	pfam_Surf1,pfscan_Surf1	-	no_errors	SURF1	HGNC	ENSG00000148290	50	0	0	108	70	39.33	-	-	-	A	136220650	G	A	136220650	4	1	550	1	0	0	0	0	0	1	0	0	15494	1299	45	2	453	2	SURF1	9	136220650	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4456454	136220650	4992781	449	48511										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714957	138714957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcttcgtggccgtggggtgtGgctggttctgtggggtcaga	19	7	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	138714957	138714957	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.1583	p.P528L	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	94	0	0	111	150	57.47	-	-	-	A	138714957	G	A	138714957	3	1	550	1	0	0	0	0	1	0	0	0	2636	1348	47	4	3286	4	CAMSAP1	9	138714957	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2494307	138714957	2498474	450	48512										
SEC16A	0	genome.wustl.edu	37	chr9	139350573	139350573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggccaaggactcctcttctgGcttctctttcagctggggat	11	12	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	139350573	139350573	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.5596	p.P1866S	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	56	0	0	65	78	54.55	-	-	-	A	139350573	G	A	139350573	3	1	550	1	0	0	0	0	1	0	0	0	14074	1203	42	4	1533	4	SEC16A	9	139350573	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	635616	139350573	1862858	451	48513										
MAN1B1	0	genome.wustl.edu	37	chr9	139983368	139983368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agaagatgaggccagaaattGctgggttaaaaccagcaaat	11	6	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	9	139983368	139983368	G	A	SNP	MAN1B1	ENST00000371589	human	ensembl	69_37n	1	known	missense	c.376	p.A126T	0.006	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	61	0	0	79	11	12.22	-	-	-	A	139983368	G	A	139983368	3	1	550	1	0	0	0	0	1	0	0	0	9283	1319	46	4	386	4	MAN1B1	9	139983368	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	632795	139983368	1230063	452	48514										
AKR1E2	0	genome.wustl.edu	37	chr10	4889402	4889402	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcagcctaaacaggaatctCcgactggccatgttccccat	7	15	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	4889402	4889402	C	T	SNP	AKR1E2	ENST00000298375	human	ensembl	69_37n	1	known	silent	c.900	p.L300	0.027	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1E2	HGNC	ENSG00000165568	216	0	0	126	148	54.01	-	-	-	T	4889402	C	T	4889402	2	4	550	1	0	0	0	0	0	0	0	1	474	842	30	2		2	AKR1E2	10	4889402	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		4889402	130645345	453	48515										
ITIH2	0	genome.wustl.edu	37	chr10	7786202	7786202	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agccatggttctagcacattCtccttgtcctggtccgacac	8	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	7786202	7786202	C	T	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	1	known	silent	c.2367	p.F789	0.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	127	0	0	87	12	12.12	-	-	-	T	7786202	C	T	7786202	2	4	550	1	0	0	0	0	0	0	0	1	7958	912	32	2		2	ITIH2	10	7786202	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2896800	7786202	127748545	454	48516										
GATA3	0	genome.wustl.edu	37	chr10	8106022	8106022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcggcgagatggcacgggacActacctgtgcaacgcctgcg	15	13	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	8106022	8106022	A	G	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.845	p.H282R	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	67	0	0	89	31	25.41	-	-	-	G	8106022	A	G	8106022	3	3	550	1	0	0	0	0	1	0	0	0	6305	159	6	5	855	5	GATA3	10	8106022	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	319820	8106022	127428725	455	48517										
CDC123	0	genome.wustl.edu	37	chr10	12238268	12238268	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagaaggagcatgtgcttcaCtgccagttctccgcgtggta	12	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	12238268	12238268	C	T	SNP	CDC123	ENST00000281141	human	ensembl	69_37n	1	known	silent	c.24	p.H8	1.000	pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465	35	0	0	62	11	15.07	-	-	-	T	12238268	C	T	12238268	2	4	550	1	0	0	0	0	0	0	0	1	3084	564	20	4		4	CDC123	10	12238268	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4132246	12238268	123296479	456	48518										
MEIG1	0	genome.wustl.edu	37	chr10	15014823	15014823	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgttctaagaactggctgCagatgcattaaagttgtact	9	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	15014823	15014823	C	T	SNP	MEIG1	ENST00000477770	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MEIG1	HGNC	ENSG00000197889	9	0	0	23	13	36.11	-	-	-	T	15014823	C	T	15014823	1	4	550	0	1	0	0	0	0	0	0	0	9537	725	25	4		4	MEIG1	10	15014823	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2776555	15014823	120519924	457	48519										
CUBN	0	genome.wustl.edu	37	chr10	16957101	16957101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgtctgtgacaaacctgacCacagcagtattgctagaagt	9	11	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	16957101	16957101	C	T	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.7281	p.V2427	0.926	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	187	1	0.53	88	21	19.27	-	-	-	T	16957101	C	T	16957101	2	4	550	1	0	0	0	0	0	0	0	1	4082	581	21	4		4	CUBN	10	16957101	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1942278	16957101	118577646	458	48520										
CUBN	0	genome.wustl.edu	37	chr10	17146500	17146500	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaacgccatcaacacaagtTcctccattcaaacaggggtt	6	13	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	17146500	17146500	T	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.1335	p.G445	0.518	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	97	0	0	56	14	20	-	-	-	A	17146500	T	A	17146500	2	1	550	1	0	0	0	0	0	0	0	1	4082	1770	62	5		5	CUBN	10	17146500	Silent	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	189399	17146500	118388247	459	48521										
DNAJC1	0	genome.wustl.edu	37	chr10	22171320	22171320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaatatatgtagtttctaaaGgtgtgtatacaggaaattca	9	3	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	22171320	22171320	G	A	SNP	DNAJC1	ENST00000376980	human	ensembl	69_37n	-1	known	missense	c.869	p.P290L	1.000	NULL	pfam_DnaJ_N,pfam_SANT/Myb,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC1	HGNC	ENSG00000136770	249	0	0	149	18	10.78	-	-	-	A	22171320	G	A	22171320	3	1	550	1	0	0	0	0	1	0	0	0	4663	1000	35	4	815	4	DNAJC1	10	22171320	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5024820	22171320	113363427	460	48522										
KIAA1217	0	genome.wustl.edu	37	chr10	24762530	24762530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgagggacggatgagcatagCctcatcccatggtggacacc	13	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	24762530	24762530	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	missense	c.1220	p.A407V	0.998	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	139	0	0	116	18	13.33	-	-	-	T	24762530	C	T	24762530	3	4	550	1	0	0	0	0	1	0	0	0	8268	739	26	4	1242	4	KIAA1217	10	24762530	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2591210	24762530	110772217	461	48523										
ARHGAP21	0	genome.wustl.edu	37	chr10	24889775	24889775	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcagacggagtcgtctgctCtcttttatctttgtacaggt	9	10	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	24889775	24889775	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.2932	p.E978K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	154	0	0	190	120	38.71	-	-	-	T	24889775	C	T	24889775	3	4	550	1	0	0	0	0	1	0	0	0	873	922	32	2	2996	2	ARHGAP21	10	24889775	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	127245	24889775	110644972	462	48524										
KIF5B	0	genome.wustl.edu	37	chr10	32306077	32306077	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtgttctactaaccaatctGtgcagaatgccctcttctgg	8	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	32306077	32306077	G	A	SNP	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	nonsense	c.2755	p.Q919*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	293	0	0	204	24	10.53	-	-	-	A	32306077	G	A	32306077	4	1	550	1	0	0	0	0	0	1	0	0	8358	1386	48	4	144	4	KIF5B	10	32306077	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7416302	32306077	103228670	463	48525										
OR13A1	0	genome.wustl.edu	37	chr10	45799216	45799216	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gccgtagaaagcatccgccaGgacaatcatgacaccgttga	10	12	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	45799216	45799216	G	A	SNP	OR13A1	ENST00000374401	human	ensembl	69_37n	-1	known	silent	c.655	p.L219	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574	107	0	0	67	131	65.83	-	-	-	A	45799216	G	A	45799216	2	1	550	1	0	0	0	0	0	0	0	1	11006	991	35	4		4	OR13A1	10	45799216	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13493139	45799216	89735531	464	48526										
PRKG1	0	genome.wustl.edu	37	chr10	53822322	53822322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtcactcgtgaagactcacCgagtgaagacccagtctttc	9	12	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	53822322	53822322	C	T	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	missense	c.866	p.P289L	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	151	0	0	56	12	17.65	-	-	-	T	53822322	C	T	53822322	3	4	550	1	0	0	0	0	1	0	0	0	12603	652	23	1	1162	1	PRKG1	10	53822322	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	8023106	53822322	81712425	465	48527										
RHOBTB1	0	genome.wustl.edu	37	chr10	62648543	62648543	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcacattccattaaaaacaGatcataaaatttggaagaag	5	6	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	62648543	62648543	G	A	SNP	RHOBTB1	ENST00000337910	human	ensembl	69_37n	-1	known	silent	c.883	p.L295	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB1	HGNC	ENSG00000072422	272	0	0	321	100	23.75	-	-	-	A	62648543	G	A	62648543	2	1	550	1	0	0	0	0	0	0	0	1	13417	933	33	2		2	RHOBTB1	10	62648543	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8826221	62648543	72886204	466	48528										
ARID5B	0	genome.wustl.edu	37	chr10	63852065	63852065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtcttaggcagccagagtcGagactgtcaccccaaagcct	11	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	63852065	63852065	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.2843	p.R948Q	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	177	0	0	211	30	12.45	-	-	-	A	63852065	G	A	63852065	3	1	550	1	0	0	0	0	1	0	0	0	924	1058	37	1	2881	1	ARID5B	10	63852065	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1203522	63852065	71682682	467	48529										
ARID5B	0	genome.wustl.edu	37	chr10	63852686	63852686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acctgtaggaagttcatatgGggaccttttgcataacagca	10	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	63852686	63852686	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.3464	p.G1155E	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	208	0	0	255	29	10.21	-	-	-	A	63852686	G	A	63852686	3	1	550	1	0	0	0	0	1	0	0	0	924	1232	43	4	3502	4	ARID5B	10	63852686	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	621	63852686	71682061	468	48530										
HERC4	0	genome.wustl.edu	37	chr10	69700784	69700784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taaagccaaaggaaaatggaGgtccacaatggtacaattat	9	6	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	69700784	69700784	G	A	SNP	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	missense	c.2440	p.L814F	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	240	0	0	174	26	13	-	-	-	A	69700784	G	A	69700784	3	1	550	1	0	0	0	0	1	0	0	0	7111	1000	35	4	757	4	HERC4	10	69700784	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5848098	69700784	65833963	469	48531										
PRF1	0	genome.wustl.edu	37	chr10	72358691	72358691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggatgcctatgttgacctgGgcctcgacagtcaggcagtc	13	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	72358691	72358691	G	A	SNP	PRF1	ENST00000318971	human	ensembl	69_37n	-1	known	silent	c.786	p.A262	0.378	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_MACPF,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	PRF1	HGNC	ENSG00000180644	63	0	0	30	8	21.05	-	-	-	A	72358691	G	A	72358691	2	1	550	1	0	0	0	0	0	0	0	1	12559	1219	43	4		4	PRF1	10	72358691	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2657907	72358691	63176056	470	48532										
P4HA1	0	genome.wustl.edu	37	chr10	74803710	74803710	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggtcatgtactgtagctcgGctcagctacaaaaaaagaga	11	8	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	74803710	74803710	G	A	SNP	P4HA1	ENST00000263556	human	ensembl	69_37n	-1	known	silent	c.1083	p.S361	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884	265	0	0	233	42	15.27	-	-	-	A	74803710	G	A	74803710	2	1	550	1	0	0	0	0	0	0	0	1	11429	1194	42	4		4	P4HA1	10	74803710	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2445019	74803710	60731037	471	48533										
GRID1	0	genome.wustl.edu	37	chr10	87482773	87482773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcttaccttatggggttgtCcatcctggacactgtgagga	13	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	87482773	87482773	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.1984	p.D662N	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	53	0	0	42	5	10.64	-	-	-	T	87482773	C	T	87482773	3	4	550	1	0	0	0	0	1	0	0	0	6822	855	30	2	1065	2	GRID1	10	87482773	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	12679063	87482773	48051974	472	48534										
GRID1	0	genome.wustl.edu	37	chr10	87484362	87484362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccactgaatagtccatgtaCcgcttgctgaagtccacaac	7	14	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	87484362	87484362	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	silent	c.1605	p.R535	0.978	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	112	0	0	69	14	16.87	-	-	-	T	87484362	C	T	87484362	2	4	550	1	0	0	0	0	0	0	0	1	6822	494	18	4		4	GRID1	10	87484362	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1589	87484362	48050385	473	48535										
FAM35A	0	genome.wustl.edu	37	chr10	88911838	88911838	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tatcaactgatacagaatttCtcagtataattacctccagc	4	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	88911838	88911838	C	T	SNP	FAM35A	ENST00000298786	human	ensembl	69_37n	1	known	missense	c.727	p.L243F	0.999	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376	131	0	0	160	38	19.19	-	-	-	T	88911838	C	T	88911838	3	4	550	1	0	0	0	0	1	0	0	0	5599	913	32	2	729	2	FAM35A	10	88911838	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1427476	88911838	46622909	474	48536										
PYROXD2	0	genome.wustl.edu	37	chr10	100150365	100150365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggcccctacctgtgggaagGcaggccatccatggcatctt	13	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	100150365	100150365	G	A	SNP	PYROXD2	ENST00000370575	human	ensembl	69_37n	-1	known	missense	c.1282	p.P428S	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943	73	0	0	67	10	12.99	-	-	-	A	100150365	G	A	100150365	3	1	550	1	0	0	0	0	1	0	0	0	12950	1203	42	4	483	4	PYROXD2	10	100150365	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11238527	100150365	35384382	475	48537										
ENTPD7	0	genome.wustl.edu	37	chr10	101464247	101464247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtccgacaagcccatggtaGctggttccgtctctcctttg	10	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	101464247	101464247	G	A	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.1622	p.S541N	0.778	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	160	0	0	138	40	22.47	-	-	-	A	101464247	G	A	101464247	3	1	550	1	0	0	0	0	1	0	0	0	5181	971	34	4	1668	4	ENTPD7	10	101464247	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1313882	101464247	34070500	476	48538										
WNT8B	0	genome.wustl.edu	37	chr10	102239669	102239669	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcagtgtggcagctggtgcCcagagtggtattgaagaatg	16	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	102239669	102239669	C	T	SNP	WNT8B	ENST00000343737	human	ensembl	69_37n	1	known	silent	c.141	p.A47	0.997	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8B	HGNC	ENSG00000075290	134	0	0	141	17	10.76	-	-	-	T	102239669	C	T	102239669	2	4	550	1	0	0	0	0	0	0	0	1	17494	610	22	4		4	WNT8B	10	102239669	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	775422	102239669	33295078	477	48539										
MGEA5	0	genome.wustl.edu	37	chr10	103547335	103547335	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttacgcattagatatctaaCccaactacagaacttagcaa	5	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	103547335	103547335	C	T	SNP	MGEA5	ENST00000462994	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MGEA5	HGNC	ENSG00000198408	56	0	0	57	12	17.39	-	-	-	T	103547335	C	T	103547335	1	4	550	0	1	0	0	0	0	0	0	0	9626	522	18	4		4	MGEA5	10	103547335	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1307666	103547335	31987412	478	48540										
GSTO1	0	genome.wustl.edu	37	chr10	106027078	106027078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggaagatcccacagtctcagCcctgcttactagtgagaaag	10	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	106027078	106027078	C	T	SNP	GSTO1	ENST00000369713	human	ensembl	69_37n	1	known	missense	c.641	p.A214V	0.010	superfamily_Glutathione-S-Trfase_C-like	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_omega	-	no_errors	GSTO1	HGNC	ENSG00000148834	105	0	0	130	71	35.32	-	-	-	T	106027078	C	T	106027078	3	4	550	1	0	0	0	0	1	0	0	0	6893	739	26	4	663	4	GSTO1	10	106027078	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2479743	106027078	29507669	479	48541										
NRAP	0	genome.wustl.edu	37	chr10	115355432	115355432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgggtgaaatcgggatggtCggggatcagggtgtatctgt	18	5	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	115355432	115355432	C	T	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	missense	c.4510	p.D1504N	0.998	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	51	0	0	93	30	24.39	-	-	-	T	115355432	C	T	115355432	3	4	550	1	0	0	0	0	1	0	0	0	10711	884	31	1	726	1	NRAP	10	115355432	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	9328354	115355432	20179315	480	48542										
INPP5F	0	genome.wustl.edu	37	chr10	121565930	121565930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttttcgtgttaattgtatgGactgcctggatcgcaccaac	9	9	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	121565930	121565930	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	missense	c.1378	p.D460N	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	57	0	0	46	12	20.69	-	-	-	A	121565930	G	A	121565930	3	1	550	1	0	0	0	0	1	0	0	0	7812	1174	41	2	1424	2	INPP5F	10	121565930	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6210498	121565930	13968817	481	48543										
TACC2	0	genome.wustl.edu	37	chr10	123846638	123846638	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggcagcctggccaggcctGgaaggccaggcttactcaca	15	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	123846638	123846638	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.4623	p.L1541	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	27	0	0	18	4	18.18	-	-	-	A	123846638	G	A	123846638	2	1	550	1	0	0	0	0	0	0	0	1	15594	1335	47	4		4	TACC2	10	123846638	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2280708	123846638	11688109	482	48544										
HTRA1	0	genome.wustl.edu	37	chr10	124266235	124266235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctgtcctgctgcttggccGctcctcagagctgcggccgg	14	16	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	124266235	124266235	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	69_37n	1	known	missense	c.806	p.R269H	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	39	0	0	34	43	55.84	-	-	-	A	124266235	G	A	124266235	3	1	550	1	0	0	0	0	1	0	0	0	7507	1087	38	1	820	1	HTRA1	10	124266235	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	419597	124266235	11268512	483	48545										
CTBP2	0	genome.wustl.edu	37	chr10	126682487	126682487	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctgccctccttgagggctTgtgctaaggctttctcgtcc	10	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	126682487	126682487	T	A	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	missense	c.2468	p.Q823L	1.000	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	94	0	0	74	20	21.28	-	-	-	A	126682487	T	A	126682487	3	1	550	1	0	0	0	0	1	0	0	0	4030	1812	63	5	505	5	CTBP2	10	126682487	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	2416252	126682487	8852260	484	48546										
MKI67	0	genome.wustl.edu	37	chr10	129914023	129914023	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtgggaacagacttcaattCtccataacggctcactaatt	7	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	10	129914023	129914023	C	T	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.649	p.E217K	0.001	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	140	0	0	119	17	12.41	-	-	-	T	129914023	C	T	129914023	3	4	550	1	0	0	0	0	1	0	0	0	9669	922	32	2	9157	2	MKI67	10	129914023	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3231536	129914023	5620724	485	48547										
SIRT3	0	genome.wustl.edu	37	chr11	230474	230474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaatgtcctcccctgggaagGgtctttggcagactgtgcag	14	10	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	230474	230474	G	A	SNP	SIRT3	ENST00000382743	human	ensembl	69_37n	-1	known	missense	c.785	p.P262L	0.000	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	49	0	0	90	43	32.33	-	-	-	A	230474	G	A	230474	3	1	550	1	0	0	0	0	1	0	0	0	14428	1232	43	4	430	4	SIRT3	11	230474	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		230474	134776042	486	48548										
OR51L1	0	genome.wustl.edu	37	chr11	5020401	5020401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctccatcagcccatgtattaCtttatttccatcttagcagt	4	12	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	5020401	5020401	C	T	SNP	OR51L1	ENST00000321543	human	ensembl	69_37n	1	known	silent	c.189	p.Y63	0.974	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51L1	HGNC	ENSG00000176798	434	0	0	459	146	24.05	-	-	-	T	5020401	C	T	5020401	2	4	550	1	0	0	0	0	0	0	0	1	11175	576	20	4		4	OR51L1	11	5020401	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4789927	5020401	129986115	487	48549										
OR52D1	0	genome.wustl.edu	37	chr11	5510153	5510153	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgccttctctcactcacaGacctggctctcagttctacc	5	17	6	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	5510153	5510153	G	A	SNP	OR52D1	ENST00000322641	human	ensembl	69_37n	1	known	missense	c.217	p.D73N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609	243	0	0	194	29	12.95	-	-	-	A	5510153	G	A	5510153	3	1	550	1	0	0	0	0	1	0	0	0	11187	942	33	2	219	2	OR52D1	11	5510153	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	489752	5510153	129496363	488	48550										
OR6A2	0	genome.wustl.edu	37	chr11	6816747	6816747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctccagaaaggacatattagCtagaaaaaagtacatgggtt	9	6	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	6816747	6816747	C	T	SNP	OR6A2	ENST00000332601	human	ensembl	69_37n	-1	known	missense	c.193	p.A65T	0.069	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	256	0	0	235	27	10.27	-	-	-	T	6816747	C	T	6816747	3	4	550	1	0	0	0	0	1	0	0	0	11259	797	28	4	794	4	OR6A2	11	6816747	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1306594	6816747	128189769	489	48551										
SCUBE2	0	genome.wustl.edu	37	chr11	9081968	9081968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggctacctttacatgtcttCccatccaactggagagtgaa	8	11	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	9081968	9081968	C	T	SNP	SCUBE2	ENST00000519788	human	ensembl	69_37n	-1	novel	missense	c.125	p.G42E	1.000	smart_EGF-like,smart_EGF-like_Ca-bd	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCUBE2	HGNC	ENSG00000175356	137	0	0	99	28	22.05	-	-	-	T	9081968	C	T	9081968	3	4	550	1	0	0	0	0	1	0	0	0	14033	842	30	2	2196	2	SCUBE2	11	9081968	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2265221	9081968	125924548	490	48552										
ZNF143	0	genome.wustl.edu	37	chr11	9494268	9494268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaggcgtaagcttgcaagcaGtaacacttgcagatggttct	11	8	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	9494268	9494268	G	A	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	1	known	missense	c.157	p.V53I	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	169	0	0	148	41	21.69	-	-	-	A	9494268	G	A	9494268	3	1	550	1	0	0	0	0	1	0	0	0	17828	1029	36	4	163	4	ZNF143	11	9494268	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	412300	9494268	125512248	491	48553										
CTR9	0	genome.wustl.edu	37	chr11	10792046	10792046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attcacaggctagacatgtgGcacccagtgatacagttctt	9	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	10792046	10792046	G	A	SNP	CTR9	ENST00000361367	human	ensembl	69_37n	1	known	missense	c.2239	p.A747T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730	235	0	0	191	71	27.1	-	-	-	A	10792046	G	A	10792046	3	1	550	1	0	0	0	0	1	0	0	0	4056	1203	42	4	2309	4	CTR9	11	10792046	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1297778	10792046	124214470	492	48554										
USH1C	0	genome.wustl.edu	37	chr11	17530962	17530962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttagtgggcttcccactgtGgttctttgcctcccagtcct	10	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	17530962	17530962	G	A	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.1954	p.H652Y	0.967	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	33	0	0	19	15	44.12	-	-	-	A	17530962	G	A	17530962	3	1	550	1	0	0	0	0	1	0	0	0	17131	1348	47	4	785	4	USH1C	11	17530962	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6738916	17530962	117475554	493	48555										
KCNC1	0	genome.wustl.edu	37	chr11	17794025	17794025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaaaaagaagcatattccgCggccaccgcagctgggatct	10	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	17794025	17794025	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	69_37n	1	known	missense	c.1384	p.R462W	0.994	prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	125	0	0	82	12	12.77	-	-	-	T	17794025	C	T	17794025	3	4	550	1	0	0	0	0	1	0	0	0	8068	759	27	1	1390	1	KCNC1	11	17794025	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	263063	17794025	117212491	494	48556										
HPS5	0	genome.wustl.edu	37	chr11	18306957	18306957	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atctgcaggaagtttaattaGatgaaggatcagctgactgt	11	5	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	18306957	18306957	G	A	SNP	HPS5	ENST00000349215	human	ensembl	69_37n	-1	known	silent	c.2887	p.L963	0.999	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	121	0	0	102	26	20.16	-	-	-	A	18306957	G	A	18306957	2	1	550	1	0	0	0	0	0	0	0	1	7393	933	33	2		2	HPS5	11	18306957	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	512932	18306957	116699559	495	48557										
NELL1	0	genome.wustl.edu	37	chr11	21135145	21135145	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttccttcagatattgatgaGtgtgcagctaagatgcatta	9	6	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	21135145	21135145	G	A	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	silent	c.1311	p.E437	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	286	0	0	256	39	13.22	-	-	-	A	21135145	G	A	21135145	2	1	550	1	0	0	0	0	0	0	0	1	10405	1020	36	4		4	NELL1	11	21135145	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2828188	21135145	113871371	496	48558										
TCP11L1	0	genome.wustl.edu	37	chr11	33065467	33065467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actcctccagcccccaaagaGtgcagagacctcactgtaag	8	15	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	33065467	33065467	G	A	SNP	TCP11L1	ENST00000527661	human	ensembl	69_37n	1	known	missense	c.148	p.V50M	0.002	NULL	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148	187	0	0	169	68	28.69	-	-	-	A	33065467	G	A	33065467	3	1	550	1	0	0	0	0	1	0	0	0	15809	1029	36	4	150	4	TCP11L1	11	33065467	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11930322	33065467	101941049	497	48559										
HIPK3	0	genome.wustl.edu	37	chr11	33373169	33373169	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtagtatgtcagatgaagaGcaagaaagtagttgtgatac	12	3	1	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	33373169	33373169	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	silent	c.2823	p.E941	0.875	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	187	0	0	154	22	12.5	-	-	-	A	33373169	G	A	33373169	2	1	550	1	0	0	0	0	0	0	0	1	7169	962	34	4		4	HIPK3	11	33373169	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	307702	33373169	101633347	498	48560										
RAG1	0	genome.wustl.edu	37	chr11	36595756	36595756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatctgtgaacacattctggCtgaccctgtggagaccaact	10	11	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	36595756	36595756	C	A	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.902	p.A301D	0.998	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	184	0	0	80	27	25.23	-	-	-	A	36595756	C	A	36595756	3	1	550	1	0	0	0	0	1	0	0	0	13086	797	28	4	904	4	RAG1	11	36595756	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3222587	36595756	98410760	499	48561										
SLC35C1	0	genome.wustl.edu	37	chr11	45832507	45832507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctacaacaacgtcaacgcctGcatcctcttcctgcccctgc	5	19	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	45832507	45832507	G	A	SNP	SLC35C1	ENST00000314134	human	ensembl	69_37n	1	known	missense	c.716	p.C239Y	0.999	pfam_DUF250,pfam_UAA	pfam_DUF250,pfam_UAA,pfam_DMT	-	no_errors	SLC35C1	HGNC	ENSG00000181830	20	0	0	22	17	43.59	-	-	-	A	45832507	G	A	45832507	3	1	550	1	0	0	0	0	1	0	0	0	14668	1319	46	4	722	4	SLC35C1	11	45832507	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	9236751	45832507	89174009	500	48562										
PEX16	0	genome.wustl.edu	37	chr11	45937777	45937777	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgttcttggcagaattctcaCcacaggcaactttttccgaa	7	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	45937777	45937777	C	T	SNP	PEX16	ENST00000241041	human	ensembl	69_37n	-1	known	splice_site	c.225+1	e3+1	1.000	-	-	-	no_errors	PEX16	HGNC	ENSG00000121680	124	0	0	89	10	10.1	-	-	-	T	45937777	C	T	45937777	5	4	550	1	0	0	0	0	0	0	1	0	11817	521	18	4	913	4	PEX16	11	45937777	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	105270	45937777	89068739	501	48563										
AMBRA1	0	genome.wustl.edu	37	chr11	46563794	46563794	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaactagcctcgccagaggaGtagttaggtgtggttctttc	13	8	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	46563794	46563794	G	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	nonsense	c.1773	p.Y591*	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	55	0	0	77	9	10.47	-	-	-	T	46563794	G	T	46563794	4	4	550	1	0	0	0	0	0	1	0	0	565	1024	36	4	2171	4	AMBRA1	11	46563794	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	626017	46563794	88442722	502	48564										
MADD	0	genome.wustl.edu	37	chr11	47330183	47330183	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccaagcataaaggagaagctGgcaggcagccccattcgtac	11	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	47330183	47330183	G	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	silent	c.3801	p.L1267	0.236	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	111	0	0	99	23	18.85	-	-	-	A	47330183	G	A	47330183	2	1	550	1	0	0	0	0	0	0	0	1	9219	1335	47	4		4	MADD	11	47330183	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	766389	47330183	87676333	503	48565										
OR4B1	0	genome.wustl.edu	37	chr11	48238375	48238375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggaatccatggccagtacaaGtaatgtgactgagttgattt	11	6	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	48238375	48238375	G	A	SNP	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	missense	c.14	p.S5N	0.980	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	212	0	0	227	34	13.03	-	-	-	A	48238375	G	A	48238375	3	1	550	1	0	0	0	0	1	0	0	0	11117	1029	36	4	16	4	OR4B1	11	48238375	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	908192	48238375	86768141	504	48566										
OR4A5	0	genome.wustl.edu	37	chr11	51412279	51412279	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccaccacaatgagcaggttCcccaccactgtcaccaagta	6	16	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	51412279	51412279	C	T	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	silent	c.117	p.G39	0.908	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	265	0	0	114	42	26.92	-	-	-	T	51412279	C	T	51412279	2	4	550	1	0	0	0	0	0	0	0	1	11116	842	30	2		2	OR4A5	11	51412279	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3173904	51412279	83594237	505	48567										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57070110	57070110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcctccaggagggtggagaGtccctgccaggctccagcac	15	14	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	57070110	57070110	G	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.4506	p.D1502	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	42	0	0	50	7	12.28	-	-	-	A	57070110	G	A	57070110	2	1	550	1	0	0	0	0	0	0	0	1	16415	1020	36	4		4	TNKS1BP1	11	57070110	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5657831	57070110	77936406	506	48568										
VWCE	0	genome.wustl.edu	37	chr11	61026322	61026322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatcatggaaagtgctgaaGcttccgtcaggagggtgcca	13	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	61026322	61026322	G	A	SNP	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	missense	c.2693	p.A898V	0.003	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	17	0	0	36	32	47.06	-	-	-	A	61026322	G	A	61026322	3	1	550	1	0	0	0	0	1	0	0	0	17342	971	34	4	178	4	VWCE	11	61026322	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3956212	61026322	73980194	507	48569										
FADS2	0	genome.wustl.edu	37	chr11	61607887	61607887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agaccaaccacgtgttcttcCtcctcctcctggcccacatc	5	19	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	61607887	61607887	C	T	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.400	p.L134F	0.331	pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	129	0	0	87	17	16.35	-	-	-	T	61607887	C	T	61607887	3	4	550	1	0	0	0	0	1	0	0	0	5406	681	24	4	410	4	FADS2	11	61607887	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	581565	61607887	73398629	508	48570										
BEST1	0	genome.wustl.edu	37	chr11	61719351	61719351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccgcctgctgctgtgctggCggggcagcatctacaagctg	14	14	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	61719351	61719351	C	T	SNP	BEST1	ENST00000378043	human	ensembl	69_37n	1	known	missense	c.73	p.R25W	0.859	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	97	0	0	84	26	23.64	-	-	-	T	61719351	C	T	61719351	3	4	550	1	0	0	0	0	1	0	0	0	1408	759	27	1	75	1	BEST1	11	61719351	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	111464	61719351	73287165	509	48571										
NXF1	0	genome.wustl.edu	37	chr11	62571307	62571307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcatcactcattgccacatCtccatcatcttcctcaaggc	5	16	6	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	62571307	62571307	C	T	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.172	p.D58N	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	218	0	0	152	27	15.08	-	-	-	T	62571307	C	T	62571307	3	4	550	1	0	0	0	0	1	0	0	0	10855	913	32	2	1822	2	NXF1	11	62571307	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	851956	62571307	72435209	510	48572										
SLC22A8	0	genome.wustl.edu	37	chr11	62762183	62762183	+	Missense_Mutation	SNP	T	T	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagaggttgactccaaattcTtccacacccatagccaaact							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	62762183	62762183	T	A	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	missense	c.1047	p.E349D	0.970	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	150	0	0	55	13	18.84	-	-	-	A	62762183	T	A	62762183	3	1	550	1	0	0	0	0	1	0	0	0	14549	1606	56	5	597	5	SLC22A8	11	62762183	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	190876	62762183	72244333	511	48573	397	2								
SLC22A8	0	genome.wustl.edu	37	chr11	62762184	62762184	+	Missense_Mutation	SNP	T	T	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agaggttgactccaaattctTccacacccatagccaaacta							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	62762184	62762184	T	A	SNP	SLC22A8	ENST00000336232	human	ensembl	69_37n	-1	known	missense	c.1046	p.E349V	0.987	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	150	0	0	55	12	17.65	-	-	-	A	62762184	T	A	62762184	3	1	550	1	0	0	0	0	1	0	0	0	14549	1783	62	5	598	5	SLC22A8	11	62762184	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1	62762184	72244332	512	48574	397	2								
HRASLS5	0	genome.wustl.edu	37	chr11	63235930	63235930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtctccaggtctgggtcttGgttttccctataatggaaaa	11	8	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	63235930	63235930	G	A	SNP	HRASLS5	ENST00000301790	human	ensembl	69_37n	-1	known	missense	c.383	p.P128L	0.963	NULL	pfam_LRAT-like_dom	-	no_errors	HRASLS5	HGNC	ENSG00000168004	195	0	0	203	42	17.07	-	-	-	A	63235930	G	A	63235930	3	1	550	1	0	0	0	0	1	0	0	0	7402	1348	47	4	468	4	HRASLS5	11	63235930	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	473746	63235930	71770586	513	48575										
POLA2	0	genome.wustl.edu	37	chr11	65055252	65055252	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catctgacagcatcacgtatGaccccctgcttgacctgatt	7	14	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	65055252	65055252	G	A	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	missense	c.1072	p.D358N	1.000	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	113	0	0	72	10	12.2	-	-	-	A	65055252	G	A	65055252	3	1	550	1	0	0	0	0	1	0	0	0	12262	1290	45	2	1114	2	POLA2	11	65055252	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1819322	65055252	69951264	514	48576										
ODZ4	0	genome.wustl.edu	37	chr11	78423690	78423690	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttaaagacccgccggctgttGctgtcagaaaggaagacggc	13	10	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	78423690	78423690	G	A	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.3891	p.S1297	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	150	0	0	129	35	21.34	-	-	-	A	78423690	G	A	78423690	2	1	550	1	0	0	0	0	0	0	0	1	10910	1310	46	4		4	ODZ4	11	78423690	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13368438	78423690	56582826	515	48577										
RAB38	0	genome.wustl.edu	37	chr11	87908545	87908545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acaggtgctccttgtgcgggGcctgcatcctggcggccggc	16	14	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	87908545	87908545	G	A	SNP	RAB38	ENST00000243662	human	ensembl	69_37n	-1	known	missense	c.8	p.A3V	0.815	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB38	HGNC	ENSG00000123892	35	0	0	10	8	44.44	-	-	-	A	87908545	G	A	87908545	3	1	550	1	0	0	0	0	1	0	0	0	13011	1203	42	4	639	4	RAB38	11	87908545	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	9484855	87908545	47097971	516	48578										
MMP10	0	genome.wustl.edu	37	chr11	102649403	102649403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcatcaaagtgaatatctcCataaagcccaggtccaggtg	8	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	102649403	102649403	C	T	SNP	MMP10	ENST00000279441	human	ensembl	69_37n	-1	known	missense	c.574	p.G192R	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP10	HGNC	ENSG00000166670	212	0	0	114	20	14.93	-	-	-	T	102649403	C	T	102649403	3	4	550	1	0	0	0	0	1	0	0	0	9720	603	21	4	884	4	MMP10	11	102649403	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	14740858	102649403	32357113	517	48579										
AASDHPPT	0	genome.wustl.edu	37	chr11	105948530	105948530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttggctgccgagccgagcCgaatggctgctggcagtgcg	16	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	105948530	105948530	C	T	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	1	known	silent	c.93	p.A31	0.995	superfamily_4-PPantetheinyl_Trfase	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	48	0	0	21	4	16	-	-	-	T	105948530	C	T	105948530	2	4	550	1	0	0	0	0	0	0	0	1	23	639	23	1		1	AASDHPPT	11	105948530	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3299127	105948530	29057986	518	48580										
EXPH5	0	genome.wustl.edu	37	chr11	108385391	108385391	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaaaggttttaaaaccttcCctaggagttcctggtcttag	9	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	108385391	108385391	C	T	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	silent	c.843	p.R281	0.959	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	212	0	0	148	22	12.94	-	-	-	T	108385391	C	T	108385391	2	4	550	1	0	0	0	0	0	0	0	1	5359	622	22	4		4	EXPH5	11	108385391	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2436861	108385391	26621125	519	48581										
APOA5	0	genome.wustl.edu	37	chr11	116661512	116661512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caactgctcctgcagctcctGcacgcgcagggccacctgct	10	18	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	116661512	116661512	G	A	SNP	APOA5	ENST00000227665	human	ensembl	69_37n	-1	known	nonsense	c.433	p.Q145*	0.246	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243	32	0	0	30	4	11.76	-	-	-	A	116661512	G	A	116661512	4	1	550	1	0	0	0	0	0	1	0	0	786	1328	46	4	671	4	APOA5	11	116661512	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8276121	116661512	18345004	520	48582										
SIDT2	0	genome.wustl.edu	37	chr11	117052206	117052206	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgctgtttgtggtccgccaGaaggaggctgtggtgtcctt	15	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	117052206	117052206	G	A	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.258	p.Q86	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	23	0	0	19	6	24	-	-	-	A	117052206	G	A	117052206	2	1	550	1	0	0	0	0	0	0	0	1	14392	933	33	2		2	SIDT2	11	117052206	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	390694	117052206	17954310	521	48583										
DSCAML1	0	genome.wustl.edu	37	chr11	117299065	117299065	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacaccagggtgtaggatttGgagtaggccccggccccctg	14	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	117299065	117299065	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.6321	p.S2107	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	28	0	0	14	5	26.32	-	-	-	A	117299065	G	A	117299065	2	1	550	1	0	0	0	0	0	0	0	1	4804	1335	47	4		4	DSCAML1	11	117299065	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	246859	117299065	17707451	522	48584										
PHLDB1	0	genome.wustl.edu	37	chr11	118498536	118498536	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctccggggtctgctgacaGacagccctgcagctactgtc	12	15	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	118498536	118498536	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.997	p.D333N	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	32	0	0	99	36	26.67	-	-	-	A	118498536	G	A	118498536	3	1	550	1	0	0	0	0	1	0	0	0	11925	942	33	2	1015	2	PHLDB1	11	118498536	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1199471	118498536	16507980	523	48585										
PHLDB1	0	genome.wustl.edu	37	chr11	118498843	118498843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attttcagatgggttagccaCccgtaccctgcagcctcctg	9	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	118498843	118498843	C	T	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.1304	p.T435I	0.018	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	66	0	0	137	53	27.6	-	-	-	T	118498843	C	T	118498843	3	4	550	1	0	0	0	0	1	0	0	0	11925	507	18	4	1322	4	PHLDB1	11	118498843	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	307	118498843	16507673	524	48586										
DPAGT1	0	genome.wustl.edu	37	chr11	118969168	118969168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaagggtatcatgaagtagaGggaaaagacatgatcatccc	11	6	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	118969168	118969168	G	A	SNP	DPAGT1	ENST00000354202	human	ensembl	69_37n	-1	known	missense	c.673	p.L225F	1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269	119	0	0	64	14	17.95	-	-	-	A	118969168	G	A	118969168	3	1	550	1	0	0	0	0	1	0	0	0	4745	1000	35	4	573	4	DPAGT1	11	118969168	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	470325	118969168	16037348	525	48587										
HINFP	0	genome.wustl.edu	37	chr11	119003678	119003678	+	Missense_Mutation	SNP	G	G	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttcagtgcccgatccctctGctctatcaagtcccattacc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	119003678	119003678	G	T	SNP	HINFP	ENST00000350777	human	ensembl	69_37n	1	known	missense	c.980	p.C327F	0.984	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273	159	0	0	95	126	57.01	-	-	-	T	119003678	G	T	119003678	3	4	550	1	0	0	0	0	1	0	0	0	7161	1319	46	4	1006	4	HINFP	11	119003678	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	34510	119003678	16002838	526	48588	398	2								
HINFP	0	genome.wustl.edu	37	chr11	119003679	119003679	+	Silent	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcagtgcccgatccctctgCtctatcaagtcccattaccg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	119003679	119003679	C	T	SNP	HINFP	ENST00000350777	human	ensembl	69_37n	1	known	silent	c.981	p.C327	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273	160	0	0	93	141	60.26	-	-	-	T	119003679	C	T	119003679	2	4	550	1	0	0	0	0	0	0	0	1	7161	805	28	4		4	HINFP	11	119003679	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1	119003679	16002837	527	48589	398	2								
TRIM29	0	genome.wustl.edu	37	chr11	120008340	120008340	+	Frame_Shift_Del	DEL	C	C	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caccgtgggcttccgggactCcgagaaaatggacttgcgca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	120008340	120008340	C	-	DEL	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	frame_shift_del	c.400	p.E134fs	0.976	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	83	0	0	54	6	10	-	-	-	-	120008340	C	-	120008340	7	5	550	1	0	1	0	1	0	0	0	0	16599	864	30	0	1402	0	TRIM29	11	120008340	Frame_Shift_Del	DEL	C	TCGA-BH-A0HF-01A-11W-A071-09	1004661	120008340	14998176	528	48590										
TRIM29	0	genome.wustl.edu	37	chr11	120008616	120008616	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccgccgtgcccgttggtggTcttggcatccttgccgtcag	13	15	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	120008616	120008616	T	C	SNP	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	missense	c.124	p.T42A	0.372	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	46	0	0	39	10	20.41	-	-	-	C	120008616	T	C	120008616	3	2	550	1	0	0	0	0	1	0	0	0	16599	1667	58	5	1678	5	TRIM29	11	120008616	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	276	120008616	14997900	529	48591										
UBASH3B	0	genome.wustl.edu	37	chr11	122659956	122659956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttaaccaccggctgctctgGactcctgcctgagaattaca	8	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	122659956	122659956	G	A	SNP	UBASH3B	ENST00000284273	human	ensembl	69_37n	1	known	missense	c.920	p.G307E	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127	185	0	0	284	74	20.67	-	-	-	A	122659956	G	A	122659956	3	1	550	1	0	0	0	0	1	0	0	0	16937	1174	41	2	942	2	UBASH3B	11	122659956	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2651340	122659956	12346560	530	48592										
PRDM10	0	genome.wustl.edu	37	chr11	129801048	129801048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggaagactgggtttcctgtgGcagctgagggattgggatag	18	5	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	129801048	129801048	G	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.1393	p.P465S	0.997	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	190	0	0	185	40	17.7	-	-	-	A	129801048	G	A	129801048	3	1	550	1	0	0	0	0	1	0	0	0	12532	1203	42	4	2137	4	PRDM10	11	129801048	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7141092	129801048	5205468	531	48593										
APLP2	0	genome.wustl.edu	37	chr11	130003617	130003617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagcccaagaaattcaagagGaaattggtgggtaccagctc	11	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	130003617	130003617	G	A	SNP	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	missense	c.1678	p.E560K	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	73	0	0	59	19	24.36	-	-	-	A	130003617	G	A	130003617	3	1	550	1	0	0	0	0	1	0	0	0	781	1175	41	2	1724	2	APLP2	11	130003617	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	202569	130003617	5002899	532	48594										
SNX19	0	genome.wustl.edu	37	chr11	130780195	130780195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gattctaggaggctcttacgGgcttctactctgtcactgtc	10	11	5	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	130780195	130780195	G	A	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	silent	c.1884	p.A628	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	101	0	0	62	37	37.37	-	-	-	A	130780195	G	A	130780195	2	1	550	1	0	0	0	0	0	0	0	1	14979	1219	43	4		4	SNX19	11	130780195	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	776578	130780195	4226321	533	48595										
IGSF9B	0	genome.wustl.edu	37	chr11	133790401	133790401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtcctcgggggaggccggcCttgggctgcagactctcggg	18	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	133790401	133790401	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	silent	c.3219	p.K1073	0.979	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	17	0	0	28	14	33.33	-	-	-	T	133790401	C	T	133790401	2	4	550	1	0	0	0	0	0	0	0	1	7660	680	24	4		4	IGSF9B	11	133790401	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3010206	133790401	1216115	534	48596										
IGSF9B	0	genome.wustl.edu	37	chr11	133790814	133790814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gccaccggggccctccagccCgcggggctggaaccgagggc	17	17	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	133790814	133790814	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.2806	p.G936R	0.995	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	28	0	0	31	20	39.22	-	-	-	T	133790814	C	T	133790814	3	4	550	1	0	0	0	0	1	0	0	0	7660	652	23	1	1251	1	IGSF9B	11	133790814	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	413	133790814	1215702	535	48597										
GLB1L2	0	genome.wustl.edu	37	chr11	134234287	134234287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgaccacctttctcttcaacGtccaggtaagtccagcccca	6	16	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	11	134234287	134234287	G	A	SNP	GLB1L2	ENST00000339772	human	ensembl	69_37n	1	known	missense	c.799	p.V267I	0.001	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328	105	0	0	47	14	22.95	-	-	-	A	134234287	G	A	134234287	3	1	550	1	0	0	0	0	1	0	0	0	6481	1145	40	1	829	1	GLB1L2	11	134234287	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	443473	134234287	772229	536	48598										
SLC6A13	0	genome.wustl.edu	37	chr12	331755	331755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgataagaggccatggcctGtacccaatcatgtcttcgat	9	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	331755	331755	G	A	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	silent	c.1458	p.Y486	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	25	0	0	17	6	26.09	-	-	-	A	331755	G	A	331755	2	1	550	1	0	0	0	0	0	0	0	1	14765	1372	48	4		4	SLC6A13	12	331755	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		331755	133520140	537	48599										
SLC6A13	0	genome.wustl.edu	37	chr12	351808	351808	+	Missense_Mutation	SNP	C	C	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cactcatggtagcagccgccCcagggcaggtcgatggtgaa							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	351808	351808	C	G	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	missense	c.450	p.W150C	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	31	0	0	30	7	18.92	-	-	-	G	351808	C	G	351808	3	3	550	1	0	0	0	0	1	0	0	0	14765	624	22	4	1406	4	SLC6A13	12	351808	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	20053	351808	133500087	538	48600	399	3								
SLC6A13	0	genome.wustl.edu	37	chr12	351811	351811	+	Silent	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcatggtagcagccgccccaGggcaggtcgatggtgaagct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	351811	351811	G	A	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	silent	c.447	p.P149	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	28	0	0	30	6	16.67	-	-	-	A	351811	G	A	351811	2	1	550	1	0	0	0	0	0	0	0	1	14765	987	35	4		4	SLC6A13	12	351811	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3	351811	133500084	539	48601	399	3								
SLC6A13	0	genome.wustl.edu	37	chr12	351814	351814	+	Silent	SNP	C	C	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggtagcagccgccccagggCaggtcgatggtgaagctgct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	351814	351814	C	A	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	0.159	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	26	0	0	28	5	15.15	-	-	-	A	351814	C	A	351814	2	1	550	1	0	0	0	0	0	0	0	1	14765	697	25	4		4	SLC6A13	12	351814	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3	351814	133500081	540	48602	399	3								
LRTM2	0	genome.wustl.edu	37	chr12	1940375	1940375	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccccgctccattttcggggaCctgacgaatctgactgagct	10	14	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	1940375	1940375	C	A	SNP	LRTM2	ENST00000299194	human	ensembl	69_37n	1	known	missense	c.342	p.D114E	0.998	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159	55	0	0	49	8	14.04	-	-	-	A	1940375	C	A	1940375	3	1	550	1	0	0	0	0	1	0	0	0	9111	506	18	4	348	4	LRTM2	12	1940375	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1588561	1940375	131911520	541	48603										
CACNA1C	0	genome.wustl.edu	37	chr12	2763059	2763059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttcatctacgcggtgatcgGgatgcaggtagggaggctcc	15	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	2763059	2763059	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.4133	p.G1378E	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	26	0	0	17	9	34.62	-	-	-	A	2763059	G	A	2763059	3	1	550	1	0	0	0	0	1	0	0	0	2565	1232	43	4	4589	4	CACNA1C	12	2763059	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	822684	2763059	131088836	542	48604										
FKBP4	0	genome.wustl.edu	37	chr12	2908305	2908305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctttgaccagcgggagctccGctttgagattggcgaggggg	17	9	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	2908305	2908305	G	A	SNP	FKBP4	ENST00000001008	human	ensembl	69_37n	1	known	missense	c.566	p.R189H	0.602	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478	57	0	0	60	9	13.04	-	-	-	A	2908305	G	A	2908305	3	1	550	1	0	0	0	0	1	0	0	0	5956	1087	38	1	584	1	FKBP4	12	2908305	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	145246	2908305	130943590	543	48605										
ITFG2	0	genome.wustl.edu	37	chr12	2927377	2927377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acgagacactaatcggagagGagcagcgtccagtcttcaag	12	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	2927377	2927377	G	A	SNP	ITFG2	ENST00000228799	human	ensembl	69_37n	1	known	missense	c.340	p.E114K	1.000	superfamily_WD40_repeat_dom	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203	55	0	0	110	210	65.42	-	-	-	A	2927377	G	A	2927377	3	1	550	1	0	0	0	0	1	0	0	0	7924	1175	41	2	354	2	ITFG2	12	2927377	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	19072	2927377	130924518	544	48606										
FOXM1	0	genome.wustl.edu	37	chr12	2968234	2968234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcgtgagcctccaggattcaGgggttctggggaggacagat	17	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	2968234	2968234	G	A	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	missense	c.1976	p.P659L	0.110	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	44	0	0	94	28	22.95	-	-	-	A	2968234	G	A	2968234	3	1	550	1	0	0	0	0	1	0	0	0	6066	1000	35	4	433	4	FOXM1	12	2968234	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	40857	2968234	130883661	545	48607										
EFCAB4B	0	genome.wustl.edu	37	chr12	3765562	3765562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgactgcgggcttgaaacCtctctgtgtcctgccaagcc	10	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	3765562	3765562	C	T	SNP	EFCAB4B	ENST00000440314	human	ensembl	69_37n	-1	known	missense	c.773	p.R258K	0.988	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_EF_hand_Ca-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_HAND_2,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038	105	0	0	83	11	11.7	-	-	-	T	3765562	C	T	3765562	3	4	550	1	0	0	0	0	1	0	0	0	4972	681	24	4	1662	4	EFCAB4B	12	3765562	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	797328	3765562	130086333	546	48608										
CCND2	0	genome.wustl.edu	37	chr12	4388034	4388034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgccccagcagcgggagaagCtgtctctgatccgcaagcat	12	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	4388034	4388034	C	T	SNP	CCND2	ENST00000536537	human	ensembl	69_37n	1	putative	missense	c.266	p.A89V	1.000	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCND2	HGNC	ENSG00000118971	46	0	0	49	10	16.95	-	-	-	T	4388034	C	T	4388034	3	4	550	1	0	0	0	0	1	0	0	0	2946	796	28	4	530	4	CCND2	12	4388034	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	622472	4388034	129463861	547	48609										
ANO2	0	genome.wustl.edu	37	chr12	5685155	5685155	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacaccaggcgggggataaaGtcggaggtgatcgcaatgac	15	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	5685155	5685155	G	A	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	silent	c.2469	p.D823	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	28	0	0	18	7	28	-	-	-	A	5685155	G	A	5685155	2	1	550	1	0	0	0	0	0	0	0	1	696	1020	36	4		4	ANO2	12	5685155	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1297121	5685155	128166740	548	48610										
COPS7A	0	genome.wustl.edu	37	chr12	6840233	6840233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtcgtttcctccctggggatGtggggtcccagctgcctgcc	14	14	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	6840233	6840233	G	A	SNP	COPS7A	ENST00000538410	human	ensembl	69_37n	1	novel	missense	c.704	p.C235Y	0.902	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652	45	0	0	49	26	34.67	-	-	-	A	6840233	G	A	6840233	3	1	550	1	0	0	0	0	1	0	0	0	3768	1392	48	4		4	COPS7A	12	6840233	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1155078	6840233	127011662	549	48611										
ATN1	0	genome.wustl.edu	37	chr12	7050546	7050546	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgctcacagctgccccttAccgggacctgccggcctccc	9	21	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	7050546	7050546	A	G	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.3368	p.Y1123C	1.000	pfam_Atrophin-like,prints_Atrophin-1	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	53	0	0	29	14	32.56	-	-	-	G	7050546	A	G	7050546	3	3	550	1	0	0	0	0	1	0	0	0	1115	391	14	5	3398	5	ATN1	12	7050546	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	210313	7050546	126801349	550	48612										
ATN1	0	genome.wustl.edu	37	chr12	7050913	7050913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cactgccccttccctagtcaCctgaagaaggaaagcgacaa	8	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	7050913	7050913	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	silent	c.3543	p.H1181	1.000	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	78	0	0	47	26	35.62	-	-	-	T	7050913	C	T	7050913	2	4	550	1	0	0	0	0	0	0	0	1	1115	506	18	4		4	ATN1	12	7050913	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	367	7050913	126800982	551	48613										
CLEC9A	0	genome.wustl.edu	37	chr12	10205134	10205134	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccactttctgaatgaaggtgCatctattctactccttaaac	5	11	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	10205134	10205134	C	T	SNP	CLEC9A	ENST00000544751	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	CLEC9A	HGNC	ENSG00000197992	33	0	0	35	7	16.67	-	-	-	T	10205134	C	T	10205134	1	4	550	0	1	0	0	0	0	0	0	0	3552	725	25	4		4	CLEC9A	12	10205134	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3154221	10205134	123646761	552	48614										
OLR1	0	genome.wustl.edu	37	chr12	10319454	10319454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgttttctgactcctgtgaaGcttcttctgcttgttgccgg	10	11	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	10319454	10319454	G	A	SNP	OLR1	ENST00000309539	human	ensembl	69_37n	-1	known	missense	c.281	p.A94V	0.081	NULL	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	OLR1	HGNC	ENSG00000173391	245	0	0	319	47	12.84	-	-	-	A	10319454	G	A	10319454	3	1	550	1	0	0	0	0	1	0	0	0	10936	971	34	4	556	4	OLR1	12	10319454	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	114320	10319454	123532441	553	48615										
ABCC9	0	genome.wustl.edu	37	chr12	22059194	22059194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcctttcaatatttcatttGttttcttgagtctctcagtg	6	8	5	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	22059194	22059194	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.1484	p.T495I	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	87	0	0	58	9	13.43	-	-	-	A	22059194	G	A	22059194	3	1	550	1	0	0	0	0	1	0	0	0	59	1377	48	4	3423	4	ABCC9	12	22059194	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	11739740	22059194	111792701	554	48616										
SOX5	0	genome.wustl.edu	37	chr12	24048809	24048809	+	Missense_Mutation	SNP	T	T	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggctgaaattcctcagagTgaggcttgttgggaaaactc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	24048809	24048809	T	A	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.188	p.H63L	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	361	0	0	326	301	48.01	-	-	-	A	24048809	T	A	24048809	3	1	550	1	0	0	0	0	1	0	0	0	15043	1696	59	5	2169	5	SOX5	12	24048809	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1989615	24048809	109803086	555	48617	400	2								
SOX5	0	genome.wustl.edu	37	chr12	24048810	24048810	+	Missense_Mutation	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggctgaaattcctcagagtGaggcttgttgggaaaactca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	24048810	24048810	G	A	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.187	p.H63Y	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	361	0	0	323	405	55.4	-	-	-	A	24048810	G	A	24048810	3	1	550	1	0	0	0	0	1	0	0	0	15043	1290	45	2	2170	2	SOX5	12	24048810	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1	24048810	109803085	556	48618	400	2								
MED21	0	genome.wustl.edu	37	chr12	27181288	27181288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctggaggatgttgtttatcGaggagacatgcttctggaga	14	5	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	27181288	27181288	G	A	SNP	MED21	ENST00000282892	human	ensembl	69_37n	1	known	missense	c.329	p.R110Q	0.819	pfam_Mediator_Med21	pfam_Mediator_Med21	-	no_errors	MED21	HGNC	ENSG00000152944	317	0	0	260	76	22.55	-	-	-	A	27181288	G	A	27181288	3	1	550	1	0	0	0	0	1	0	0	0	9510	1058	37	1	343	1	MED21	12	27181288	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3132478	27181288	106670607	557	48619										
PPFIBP1	0	genome.wustl.edu	37	chr12	27844711	27844711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgcctttagcaattttggGaatttgagaaagaagaaaca	9	5	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	27844711	27844711	G	A	SNP	PPFIBP1	ENST00000539326	human	ensembl	69_37n	1	novel	missense	c.425	p.G142E	1.000	NULL	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPFIBP1	HGNC	ENSG00000110841	206	0	0	246	179	42.12	-	-	-	A	27844711	G	A	27844711	3	1	550	1	0	0	0	0	1	0	0	0	12386	1161	41	2	2859	2	PPFIBP1	12	27844711	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	663423	27844711	106007184	558	48620										
DDX11	0	genome.wustl.edu	37	chr12	31247696	31247696	+	Silent	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtttgttctcagggacggaGctgaagaccatcaacgactt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	31247696	31247696	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	silent	c.1422	p.E474	0.998	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	61	0	0	33	10	23.26	-	-	-	A	31247696	G	A	31247696	2	1	550	1	0	0	0	0	0	0	0	1	4374	962	34	4		4	DDX11	12	31247696	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3402985	31247696	102604199	559	48621	401	2								
DDX11	0	genome.wustl.edu	37	chr12	31247702	31247702	+	Silent	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctcagggacggagctgaaGaccatcaacgactttctctt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	31247702	31247702	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	silent	c.1428	p.K476	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	66	0	0	38	10	20.83	-	-	-	A	31247702	G	A	31247702	2	1	550	1	0	0	0	0	0	0	0	1	4374	933	33	2		2	DDX11	12	31247702	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6	31247702	102604193	560	48622	401	2								
KIF21A	0	genome.wustl.edu	37	chr12	39752014	39752014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgagctccatctgaagtcgtGtgatttcactacgaagtgca	10	9	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	39752014	39752014	G	A	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	missense	c.1181	p.T394I	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	533	0	0	627	73	10.41	-	-	-	A	39752014	G	A	39752014	3	1	550	1	0	0	0	0	1	0	0	0	8340	1377	48	4	3967	4	KIF21A	12	39752014	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8504312	39752014	94099881	561	48623										
SLC38A2	0	genome.wustl.edu	37	chr12	46758941	46758941	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaccaccaatgacaccaacaGaaccaaatagttcccgttca	5	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	46758941	46758941	G	A	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	silent	c.595	p.L199	0.135	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	281	0	0	205	51	19.92	-	-	-	A	46758941	G	A	46758941	2	1	550	1	0	0	0	0	0	0	0	1	14693	933	33	2		2	SLC38A2	12	46758941	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7006927	46758941	87092954	562	48624										
RND1	0	genome.wustl.edu	37	chr12	49255887	49255887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagagtggacggacattatCgtagtagggagatcctggtg	16	6	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	49255887	49255887	C	G	SNP	RND1	ENST00000309739	human	ensembl	69_37n	-1	known	missense	c.223	p.D75H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND1	HGNC	ENSG00000172602	42	0	0	26	12	31.58	-	-	-	G	49255887	C	G	49255887	3	3	550	1	0	0	0	0	1	0	0	0	13505	884	31	3	487	3	RND1	12	49255887	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2496946	49255887	84596008	563	48625										
GPD1	0	genome.wustl.edu	37	chr12	50498376	50498376	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggctcagccatcgccaagAtcgtgggtggcaatgcagcc	15	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	50498376	50498376	A	C	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	missense	c.61	p.I21L	1.000	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	93	0	0	36	20	35.71	-	-	-	C	50498376	A	C	50498376	3	2	550	1	0	0	0	0	1	0	0	0	6654	333	12	5	67	5	GPD1	12	50498376	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1242489	50498376	83353519	564	48626										
GPD1	0	genome.wustl.edu	37	chr12	50498517	50498517	+	Nonsense_Mutation	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaaatacctgccagggcacAagttgcccccaaatgtggtg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	50498517	50498517	A	T	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	nonsense	c.202	p.K68*	1.000	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	77	0	0	34	25	41.67	-	-	-	T	50498517	A	T	50498517	4	4	550	1	0	0	0	0	0	1	0	0	6654	131	5	5	208	5	GPD1	12	50498517	Nonsense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	141	50498517	83353378	565	48627	402	2								
GPD1	0	genome.wustl.edu	37	chr12	50498518	50498518	+	Missense_Mutation	SNP	A	A	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaatacctgccagggcacaAgttgcccccaaatgtggtga							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	50498518	50498518	A	C	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	missense	c.203	p.K68T	1.000	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	79	0	0	36	21	36.84	-	-	-	C	50498518	A	C	50498518	3	2	550	1	0	0	0	0	1	0	0	0	6654	72	3	5	209	5	GPD1	12	50498518	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1	50498518	83353377	566	48628	402	2								
TFCP2	0	genome.wustl.edu	37	chr12	51493562	51493562	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttaaccttggacgcaccatCctaaggggaggaaaaaggct	12	9	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	51493562	51493562	C	T	SNP	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	silent	c.1152	p.R384	1.000	superfamily_SAM/pointed	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	163	0	0	225	61	21.11	-	-	-	T	51493562	C	T	51493562	2	4	550	1	0	0	0	0	0	0	0	1	15890	869	30	2		2	TFCP2	12	51493562	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	995044	51493562	82358333	567	48629										
KRT78	0	genome.wustl.edu	37	chr12	53233250	53233250	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tactcacagatagtgacctgGctggtgcactccccagacat	9	13	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	53233250	53233250	G	A	SNP	KRT78	ENST00000304620	human	ensembl	69_37n	-1	known	silent	c.1290	p.S430	0.510	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423	26	0	0	30	4	11.43	-	-	-	A	53233250	G	A	53233250	2	1	550	1	0	0	0	0	0	0	0	1	8544	1194	42	4		4	KRT78	12	53233250	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1739688	53233250	80618645	568	48630										
ITGB7	0	genome.wustl.edu	37	chr12	53587546	53587546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cactgcagtggggagcctggGgctgggtgtcactgcaatta	16	9	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	53587546	53587546	G	A	SNP	ITGB7	ENST00000267082	human	ensembl	69_37n	-1	known	missense	c.1448	p.P483L	0.006	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	43	0	0	25	7	21.88	-	-	-	A	53587546	G	A	53587546	3	1	550	1	0	0	0	0	1	0	0	0	7954	1232	43	4	972	4	ITGB7	12	53587546	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	354296	53587546	80264349	569	48631										
PPP1R1A	0	genome.wustl.edu	37	chr12	54974787	54974787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgagggttcttttgtgctggGttccttactgcctctctcgt	11	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	54974787	54974787	G	A	SNP	PPP1R1A	ENST00000257905	human	ensembl	69_37n	-1	known	missense	c.451	p.P151S	0.711	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	261	0	0	167	29	14.8	-	-	-	A	54974787	G	A	54974787	3	1	550	1	0	0	0	0	1	0	0	0	12444	1261	44	4	72	4	PPP1R1A	12	54974787	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1387241	54974787	78877108	570	48632										
OR6C76	0	genome.wustl.edu	37	chr12	55820774	55820774	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcacatgtgattgttgtctCtatctcttatggaagctgca	8	9	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	55820774	55820774	C	T	SNP	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	missense	c.737	p.S246F	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	229	0	0	144	32	18.18	-	-	-	T	55820774	C	T	55820774	3	4	550	1	0	0	0	0	1	0	0	0	11273	913	32	2	739	2	OR6C76	12	55820774	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	845987	55820774	78031121	571	48633										
BLOC1S1	0	genome.wustl.edu	37	chr12	56112986	56112986	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagtggatcggaatggtggaGaacttcaaccaggcactcaa	12	9	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	56112986	56112986	G	A	SNP	BLOC1S1	ENST00000548925	human	ensembl	69_37n	1	known	silent	c.330	p.E110	1.000	pfam_GCN5L1	pfam_GCN5L1	-	no_errors	BLOC1S1	HGNC	ENSG00000135441	44	0	0	30	7	18.92	-	-	-	A	56112986	G	A	56112986	2	1	550	1	0	0	0	0	0	0	0	1	1453	933	33	2		2	BLOC1S1	12	56112986	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	292212	56112986	77738909	572	48634										
RDH5	0	genome.wustl.edu	37	chr12	56118263	56118263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggctgcctgcctcctacctGccagccagcctggtggatgc	12	16	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	56118263	56118263	G	A	SNP	RDH5	ENST00000257895	human	ensembl	69_37n	1	known	silent	c.891	p.L297	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437	70	0	0	68	15	18.07	-	-	-	A	56118263	G	A	56118263	2	1	550	1	0	0	0	0	0	0	0	1	13278	1306	46	4		4	RDH5	12	56118263	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5277	56118263	77733632	573	48635										
SDR9C7	0	genome.wustl.edu	37	chr12	57317827	57317827	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcattatgttttttaacttGtcagtatctgtttgagggca	9	5	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	57317827	57317827	G	A	SNP	SDR9C7	ENST00000293502	human	ensembl	69_37n	-1	known	silent	c.732	p.D244	0.046	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426	143	0	0	106	39	26.9	-	-	-	A	57317827	G	A	57317827	2	1	550	1	0	0	0	0	0	0	0	1	14062	1368	48	4		4	SDR9C7	12	57317827	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1199564	57317827	76534068	574	48636										
AVIL	0	genome.wustl.edu	37	chr12	58207950	58207950	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcaccgagaggatgacgtaGcagtccccctcatagaagtt	10	12	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	58207950	58207950	G	A	SNP	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	silent	c.126	p.C42	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	17	0	0	12	4	25	-	-	-	A	58207950	G	A	58207950	2	1	550	1	0	0	0	0	0	0	0	1	1231	963	34	4		4	AVIL	12	58207950	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	890123	58207950	75643945	575	48637										
NR1H4	0	genome.wustl.edu	37	chr12	100904596	100904596	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaggtcctctgggacagaaCctggaagtggaaccatactc	12	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	100904596	100904596	C	T	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	silent	c.150	p.N50	0.027	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	114	0	0	100	26	20.47	-	-	-	T	100904596	C	T	100904596	2	4	550	1	0	0	0	0	0	0	0	1	10692	506	18	4		4	NR1H4	12	100904596	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	42696646	100904596	32947299	576	48638										
ARL1	0	genome.wustl.edu	37	chr12	101801431	101801431	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acccctcacccatgatgaacCccctgtcctccctcgccgat	5	21	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	101801431	101801431	C	T	SNP	ARL1	ENST00000549283	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARL1	HGNC	ENSG00000120805	184	0	0	217	99	31.23	-	-	-	T	101801431	C	T	101801431	1	4	550	0	1	0	0	0	0	0	0	0	927	638	22	4		4	ARL1	12	101801431	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	896835	101801431	32050464	577	48639										
STAB2	0	genome.wustl.edu	37	chr12	104031898	104031898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagaaggctaccgtggggatGgccaagtgtgcttgcctgtg	16	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	104031898	104031898	G	A	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.814	p.G272S	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	148	0	0	106	29	21.48	-	-	-	A	104031898	G	A	104031898	3	1	550	1	0	0	0	0	1	0	0	0	15329	1348	47	4	844	4	STAB2	12	104031898	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2230467	104031898	29819997	578	48640										
RFX4	0	genome.wustl.edu	37	chr12	107113818	107113819	+	Frame_Shift_Del	DEL	CG	CG	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctggataccatggttgacCgctgtgttgtgaaggttggt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	107113818	107113819	CG	-	DEL	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	frame_shift_del	c.1246_1247	p.R416fs	1.000:1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	84	0	0	72	11	13.25	-	-	-	-	107113819	CG	-	107113818	7	5	550	1	0	1	0	1	0	0	0	0	13348	652	23	0	1438	0	RFX4	12	107113818	Frame_Shift_Del	DEL	CG	TCGA-BH-A0HF-01A-11W-A071-09	3081920	107113818	26738077	579	48641										
WSCD2	0	genome.wustl.edu	37	chr12	108634215	108634215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagatcgaggccttcgacgcCgccatcctgctcatccgcaa	10	16	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	108634215	108634215	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	silent	c.1239	p.A413	0.005	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	96	0	0	149	20	11.83	-	-	-	T	108634215	C	T	108634215	2	4	550	1	0	0	0	0	0	0	0	1	17504	639	23	1		1	WSCD2	12	108634215	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1520397	108634215	25217680	580	48642										
SSH1	0	genome.wustl.edu	37	chr12	109186593	109186593	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctgacgccacagcttgttGtgccgctgtttgctgcgggg	15	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	109186593	109186593	G	A	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	silent	c.1362	p.H454	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	53	0	0	50	14	21.88	-	-	-	A	109186593	G	A	109186593	2	1	550	1	0	0	0	0	0	0	0	1	15275	1368	48	4		4	SSH1	12	109186593	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	552378	109186593	24665302	581	48643										
SSH1	0	genome.wustl.edu	37	chr12	109200108	109200108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcacattttctagatcctggCtcatcatgatgcttcggagc	8	11	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	109200108	109200108	C	T	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	missense	c.794	p.S265N	1.000	pfam_DEK_C	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	135	0	0	104	14	11.86	-	-	-	T	109200108	C	T	109200108	3	4	550	1	0	0	0	0	1	0	0	0	15275	797	28	4	2569	4	SSH1	12	109200108	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	13515	109200108	24651787	582	48644										
ATP2A2	0	genome.wustl.edu	37	chr12	110781158	110781158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggttcaaccctcctgatctgGacatcatgaataaacctccc	6	14	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	110781158	110781158	G	A	SNP	ATP2A2	ENST00000539276	human	ensembl	69_37n	1	known	missense	c.2440	p.D814N	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A2	HGNC	ENSG00000174437	144	0	0	110	39	26.17	-	-	-	A	110781158	G	A	110781158	3	1	550	1	0	0	0	0	1	0	0	0	1141	1174	41	2	2502	2	ATP2A2	12	110781158	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1581050	110781158	23070737	583	48645										
CCDC63	0	genome.wustl.edu	37	chr12	111342486	111342486	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaggctgagatcccgccaccCttcatcaaccctttctgggg	10	15	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	111342486	111342486	C	T	SNP	CCDC63	ENST00000308208	human	ensembl	69_37n	1	known	silent	c.1437	p.P479	0.854	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	83	0	0	108	41	27.52	-	-	-	T	111342486	C	T	111342486	2	4	550	1	0	0	0	0	0	0	0	1	2861	668	24	4		4	CCDC63	12	111342486	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	561328	111342486	22509409	584	48646										
ATXN2	0	genome.wustl.edu	37	chr12	111954043	111954043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacgggggtctggatggccgCgaggggggcctggagggcgg	25	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	111954043	111954043	C	T	SNP	ATXN2	ENST00000483311	human	ensembl	69_37n	-1	known	missense	c.1532	p.R511H	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN2	HGNC	ENSG00000204842	48	0	0	52	12	18.75	-	-	-	T	111954043	C	T	111954043	3	4	550	1	0	0	0	0	1	0	0	0	1215	755	27	1	2235	1	ATXN2	12	111954043	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	611557	111954043	21897852	585	48647										
ACAD10	0	genome.wustl.edu	37	chr12	112184921	112184921	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggtatggcaccgaagcgcaGaaggctcgctggctgattcc	14	11	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	112184921	112184921	G	A	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	silent	c.2418	p.Q806	1.000	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	32	0	0	29	30	50.85	-	-	-	A	112184921	G	A	112184921	2	1	550	1	0	0	0	0	0	0	0	1	108	933	33	2		2	ACAD10	12	112184921	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	230878	112184921	21666974	586	48648										
OAS3	0	genome.wustl.edu	37	chr12	113405875	113405875	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcttccgcacggtcctggaGctggtcacccagtaccgcca	12	16	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	113405875	113405875	G	A	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	silent	c.3000	p.E1000	0.955	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	68	0	0	33	5	13.16	-	-	-	A	113405875	G	A	113405875	2	1	550	1	0	0	0	0	0	0	0	1	10874	962	34	4		4	OAS3	12	113405875	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1220954	113405875	20446020	587	48649										
TPCN1	0	genome.wustl.edu	37	chr12	113731076	113731076	+	Silent	SNP	A	A	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctctgctcttccttagcaAcattccatggtgtttctggg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	113731076	113731076	A	G	SNP	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	silent	c.2472	p.Q824	0.987	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	103	0	0	56	8	12.31	-	-	-	G	113731076	A	G	113731076	2	3	550	1	0	0	0	0	0	0	0	1	16491	40	2	5		5	TPCN1	12	113731076	Silent	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	325201	113731076	20120819	588	48650	403	2								
TPCN1	0	genome.wustl.edu	37	chr12	113731078	113731079	+	Frame_Shift_Ins	INS	-	-	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgctcttccttagcaacaINSttccatggtgtttctgggac							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	113731078	113731079	-	G	INS	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	frame_shift_ins	c.2474_2475	p.H825fs	0.001:0.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	103	0	0	58	7	10.77	-	-	-	G	113731079	-	G	113731078	7	5	550	1	0	1	1	0	0	0	0	0	16491	217	8	0	2580	0	TPCN1	12	113731078	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	2	113731078	20120817	589	48651	403	2								
KSR2	0	genome.wustl.edu	37	chr12	118198910	118198910	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcccgggatcaagtgtatcaGttttcgggaggagggcggtg	17	7	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	118198910	118198910	G	A	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.892	p.L298	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	53	0	0	68	10	12.82	-	-	-	A	118198910	G	A	118198910	2	1	550	1	0	0	0	0	0	0	0	1	8636	1020	36	4		4	KSR2	12	118198910	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4467832	118198910	15652985	590	48652										
GCN1L1	0	genome.wustl.edu	37	chr12	120593461	120593461	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acccagagtctccgcagaagGttcaggccattcttctcatc	8	14	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	120593461	120593461	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	silent	c.3375	p.N1125	0.997	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	112	0	0	91	62	40.26	-	-	-	A	120593461	G	A	120593461	2	1	550	1	0	0	0	0	0	0	0	1	6349	1252	44	4		4	GCN1L1	12	120593461	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2394551	120593461	13258434	591	48653										
GCN1L1	0	genome.wustl.edu	37	chr12	120593490	120593490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attcttctcatcagtatcagGtgctggcaataccatgtgga	9	9	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	120593490	120593490	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.3346	p.P1116S	0.999	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	106	0	0	92	63	40.65	-	-	-	A	120593490	G	A	120593490	3	1	550	1	0	0	0	0	1	0	0	0	6349	1261	44	4	4789	4	GCN1L1	12	120593490	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	29	120593490	13258405	592	48654										
GCN1L1	0	genome.wustl.edu	37	chr12	120611892	120611892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taccttcctgctgaaggaacGggatgaacagctcagccacg	11	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	120611892	120611892	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.1175	p.P392L	0.999	pfam_DUF3554,superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	50	0	0	68	15	18.07	-	-	-	A	120611892	G	A	120611892	3	1	550	1	0	0	0	0	1	0	0	0	6349	1116	39	1	7024	1	GCN1L1	12	120611892	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	18402	120611892	13240003	593	48655										
OASL	0	genome.wustl.edu	37	chr12	121471334	121471334	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctggtctggatggtgaaGacgagagcatcggggactct	15	10	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	121471334	121471334	G	A	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	silent	c.411	p.V137	0.358	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	44	0	0	61	8	11.59	-	-	-	A	121471334	G	A	121471334	2	1	550	1	0	0	0	0	0	0	0	1	10875	929	33	2		2	OASL	12	121471334	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	859442	121471334	12380561	594	48656										
TMEM120B	0	genome.wustl.edu	37	chr12	122218975	122218975	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgtggggccaccacccagGaggccggcctcaccttgatg	14	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	122218975	122218975	G	A	SNP	TMEM120B	ENST00000538055	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TMEM120B	HGNC	ENSG00000188735	26	0	0	62	17	21.52	-	-	-	A	122218975	G	A	122218975	1	1	550	0	1	0	0	0	0	0	0	0	16129	1189	41	2		2	TMEM120B	12	122218975	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	747641	122218975	11632920	595	48657										
CLIP1	0	genome.wustl.edu	37	chr12	122758585	122758585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tatgtcttcatatgaaatacCtgtcataattgtttaggtca	6	6	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	122758585	122758585	C	T	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.4091	p.S1364N	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	192	0	0	215	53	19.78	-	-	-	T	122758585	C	T	122758585	3	4	550	1	0	0	0	0	1	0	0	0	3562	695	24	4	233	4	CLIP1	12	122758585	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	539610	122758585	11093310	596	48658										
DNAH10	0	genome.wustl.edu	37	chr12	124335530	124335530	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acggagctgcccgagtcggtGaaggcgctgttcaggcctgt	16	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	124335530	124335530	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.5844	p.V1948	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	57	0	0	34	9	20.93	-	-	-	A	124335530	G	A	124335530	2	1	550	1	0	0	0	0	0	0	0	1	4634	1277	45	2		2	DNAH10	12	124335530	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1576945	124335530	9516365	597	48659										
RAN	0	genome.wustl.edu	37	chr12	131359146	131359146	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agagttacttacaagaatgtGcctaactggcatagagatct	9	7	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	131359146	131359146	G	A	SNP	RAN	ENST00000392369	human	ensembl	69_37n	1	known	silent	c.303	p.V101	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAN	HGNC	ENSG00000132341	80	0	0	72	9	11.11	-	-	-	A	131359146	G	A	131359146	2	1	550	1	0	0	0	0	0	0	0	1	13107	1306	46	4		4	RAN	12	131359146	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7023616	131359146	2492749	598	48660										
EP400	0	genome.wustl.edu	37	chr12	132508392	132508392	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agccgcgtggctcagccagaGacgccggtgacactgcagtt	14	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	132508392	132508392	G	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	silent	c.4869	p.E1623	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	24	0	0	44	7	13.73	-	-	-	A	132508392	G	A	132508392	2	1	550	1	0	0	0	0	0	0	0	1	5186	933	33	2		2	EP400	12	132508392	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1149246	132508392	1343503	599	48661										
EP400	0	genome.wustl.edu	37	chr12	132514578	132514578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcttcagaaattgaaatctGaaggacgtcgggtgctgatt	12	6	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	12	132514578	132514578	G	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.5737	p.E1913K	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	91	0	0	132	20	13.16	-	-	-	A	132514578	G	A	132514578	3	1	550	1	0	0	0	0	1	0	0	0	5186	1291	45	2	5736	2	EP400	12	132514578	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6186	132514578	1337317	600	48662										
ATP8A2	0	genome.wustl.edu	37	chr13	26348991	26348991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aattttcctttttcagttttCctacttagagaagcttctgt	5	8	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	26348991	26348991	C	T	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	missense	c.2573	p.S858F	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC	ENSG00000132932	138	0	0	119	57	32.39	-	-	-	T	26348991	C	T	26348991	3	4	550	1	0	0	0	0	1	0	0	0	1197	855	30	2	2679	2	ATP8A2	13	26348991	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		26348991	88820887	601	48663										
RASL11A	0	genome.wustl.edu	37	chr13	27847233	27847233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtgggccgagggttttctgCtggtctattccatcacagac	12	10	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	27847233	27847233	C	T	SNP	RASL11A	ENST00000241463	human	ensembl	69_37n	1	known	silent	c.331	p.L111	0.996	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11A	HGNC	ENSG00000122035	97	0	0	67	16	19.28	-	-	-	T	27847233	C	T	27847233	2	4	550	1	0	0	0	0	0	0	0	1	13164	796	28	4		4	RASL11A	13	27847233	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1498242	27847233	87322645	602	48664										
BRCA2	0	genome.wustl.edu	37	chr13	32911128	32911128	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aataactgtcaatccagactCtgaagaacttttctcagaca	5	10	3	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	32911128	32911128	C	T	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.2636	p.S879F	0.007	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	135	0	0	64	10	13.51	-	-	-	T	32911128	C	T	32911128	3	4	550	1	0	0	0	0	1	0	0	0	1507	913	32	2	2674	2	BRCA2	13	32911128	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5063895	32911128	82258750	603	48665										
NBEA	0	genome.wustl.edu	37	chr13	36046644	36046644	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttcgaggtagatgaggatGattctgccttcaagaagatc	11	7	2	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	36046644	36046644	G	A	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.6556	p.D2186N	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	50	0	0	42	9	17.65	-	-	-	A	36046644	G	A	36046644	3	1	550	1	0	0	0	0	1	0	0	0	10259	1290	45	2	6718	2	NBEA	13	36046644	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3135516	36046644	79123234	604	48666										
ALG5	0	genome.wustl.edu	37	chr13	37569711	37569711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgctggcatttttgtagcaGttgtaaatgcaacgatggaa	12	5	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	37569711	37569711	G	A	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.89	p.T30I	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	58	0	0	75	10	11.76	-	-	-	A	37569711	G	A	37569711	3	1	550	1	0	0	0	0	1	0	0	0	521	1029	36	4	921	4	ALG5	13	37569711	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1523067	37569711	77600167	605	48667										
FREM2	0	genome.wustl.edu	37	chr13	39262743	39262743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtggatctagaaggagcagCttcagacccttttgccttca	10	10	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	39262743	39262743	C	T	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.1262	p.A421V	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	70	0	0	41	8	16.33	-	-	-	T	39262743	C	T	39262743	3	4	550	1	0	0	0	0	1	0	0	0	6094	797	28	4	1264	4	FREM2	13	39262743	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1693032	39262743	75907135	606	48668										
FREM2	0	genome.wustl.edu	37	chr13	39263887	39263887	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctactcgagtggcccagttCcagttccaggtggaagaccg	13	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	39263887	39263887	C	T	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	silent	c.2406	p.F802	0.896	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	78	0	0	35	8	18.6	-	-	-	T	39263887	C	T	39263887	2	4	550	1	0	0	0	0	0	0	0	1	6094	854	30	2		2	FREM2	13	39263887	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1144	39263887	75905991	607	48669										
AKAP11	0	genome.wustl.edu	37	chr13	42871190	42871190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttattttaaatcaggatttaGctgcagtttctttggaactt	7	5	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	42871190	42871190	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	missense	c.223	p.A75T	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	216	0	0	138	16	10.39	-	-	-	A	42871190	G	A	42871190	3	1	550	1	0	0	0	0	1	0	0	0	447	971	34	4	237	4	AKAP11	13	42871190	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3607303	42871190	72298688	608	48670										
ENOX1	0	genome.wustl.edu	37	chr13	43810836	43810836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctcaatattgttctctcgGtcttggttgactaatgcaac	7	9	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	43810836	43810836	G	A	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	silent	c.1650	p.D550	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	99	0	0	37	10	21.28	-	-	-	A	43810836	G	A	43810836	2	1	550	1	0	0	0	0	0	0	0	1	5163	1252	44	4		4	ENOX1	13	43810836	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	939646	43810836	71359042	609	48671										
MED4	0	genome.wustl.edu	37	chr13	48654087	48654087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacttctcatctctaaatcaGttgggtagggtctccggggg	12	10	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	48654087	48654087	G	A	SNP	MED4	ENST00000258648	human	ensembl	69_37n	-1	known	missense	c.533	p.T178I	1.000	pfam_Mediator_Med4	pfam_Mediator_Med4	-	no_errors	MED4	HGNC	ENSG00000136146	150	0	0	119	16	11.85	-	-	-	A	48654087	G	A	48654087	3	1	550	1	0	0	0	0	1	0	0	0	9521	1029	36	4	287	4	MED4	13	48654087	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4843251	48654087	66515791	610	48672										
ATP7B	0	genome.wustl.edu	37	chr13	52532602	52532602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaatgcttgtggccaggaCgatgagcacgtccatgttgg	14	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	52532602	52532602	C	A	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	missense	c.2200	p.V734F	1.000	prints_ATPase_P-typ_cat/Cu-transptr,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	200	0	0	156	20	11.36	-	-	-	A	52532602	C	A	52532602	3	1	550	1	0	0	0	0	1	0	0	0	1195	536	19	3	2253	3	ATP7B	13	52532602	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3878515	52532602	62637276	611	48673										
KLF5	0	genome.wustl.edu	37	chr13	73636549	73636549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacacacacctctgctgttcCgcagactgcagtgaaacaat	7	14	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	73636549	73636549	C	T	SNP	KLF5	ENST00000377687	human	ensembl	69_37n	1	known	missense	c.812	p.P271L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF5	HGNC	ENSG00000102554	99	0	0	83	67	44.67	-	-	-	T	73636549	C	T	73636549	3	4	550	1	0	0	0	0	1	0	0	0	8402	652	23	1	818	1	KLF5	13	73636549	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	21103947	73636549	41533329	612	48674										
SLC15A1	0	genome.wustl.edu	37	chr13	99362133	99362133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaacttacgattttcccggaCatagttgttgcctgcagtgt	9	9	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	99362133	99362133	C	T	SNP	SLC15A1	ENST00000376503	human	ensembl	69_37n	-1	known	missense	c.933	p.M311I	1.000	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	237	0	0	109	17	13.49	-	-	-	T	99362133	C	T	99362133	3	4	550	1	0	0	0	0	1	0	0	0	14487	478	17	4	1241	4	SLC15A1	13	99362133	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	25725584	99362133	15807745	613	48675										
FGF14	0	genome.wustl.edu	37	chr13	102521102	102521102	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagaggtaaccttctccattCatggctatatacaaccctgt	6	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	102521102	102521102	C	T	SNP	FGF14	ENST00000376131	human	ensembl	69_37n	-1	known	missense	c.396	p.M132I	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF14	HGNC	ENSG00000102466	180	0	0	72	13	15.29	-	-	-	T	102521102	C	T	102521102	3	4	550	1	0	0	0	0	1	0	0	0	5889	826	29	2	374	2	FGF14	13	102521102	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3158969	102521102	12648776	614	48676										
GRK1	0	genome.wustl.edu	37	chr13	114322008	114322008	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acacggcagacaatgacctcCagccacagaaggcccagacc	9	16	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	13	114322008	114322008	C	T	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	nonsense	c.307	p.Q103*	0.928	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	29	0	0	22	9	29.03	-	-	-	T	114322008	C	T	114322008	4	4	550	1	0	0	0	0	0	1	0	0	6841	595	21	4	309	4	GRK1	13	114322008	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	11800906	114322008	847870	615	48677										
NDRG2	0	genome.wustl.edu	37	chr14	21485901	21485901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtacgagaccgggacaggcGagtcatgcaggatgaggcca	16	9	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	21485901	21485901	G	A	SNP	NDRG2	ENST00000298687	human	ensembl	69_37n	-1	known	missense	c.970	p.R324C	1.000	NULL	pfam_Ndr	-	no_errors	NDRG2	HGNC	ENSG00000165795	27	0	0	38	5	11.63	-	-	-	A	21485901	G	A	21485901	3	1	550	1	0	0	0	0	1	0	0	0	10324	1058	37	1	149	1	NDRG2	14	21485901	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		21485901	85863639	616	48678										
CHD8	0	genome.wustl.edu	37	chr14	21861364	21861364	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatccatcttgggacatagtGagggacaggagactctcttc	11	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	21861364	21861364	G	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	silent	c.6369	p.L2123	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	113	0	0	76	42	35.59	-	-	-	A	21861364	G	A	21861364	2	1	550	1	0	0	0	0	0	0	0	1	3360	1277	45	2		2	CHD8	14	21861364	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	375463	21861364	85488176	617	48679										
DHRS4L2	0	genome.wustl.edu	37	chr14	24464323	24464323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggaagcctaatggatgtcaCcgaggaggtgtgggacaagg	17	6	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	24464323	24464323	C	T	SNP	DHRS4L2	ENST00000382755	human	ensembl	69_37n	1	known	missense	c.383	p.T128I	0.994	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	DHRS4L2	HGNC	ENSG00000187630	552	0	0	580	100	14.68	-	-	-	T	24464323	C	T	24464323	3	4	550	1	0	0	0	0	1	0	0	0	4530	507	18	4	399	4	DHRS4L2	14	24464323	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2602959	24464323	82885217	618	48680										
PCK2	0	genome.wustl.edu	37	chr14	24573119	24573119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caggtcaaccaggatctgccCaaagaggtgttggctgagct	13	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	24573119	24573119	C	T	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	silent	c.1869	p.P623	0.935	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	71	0	0	73	33	31.13	-	-	-	T	24573119	C	T	24573119	2	4	550	1	0	0	0	0	0	0	0	1	11655	581	21	4		4	PCK2	14	24573119	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	108796	24573119	82776421	619	48681										
PSME1	0	genome.wustl.edu	37	chr14	24607822	24607822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaggcagctttcccaggccaCccactccctgaccctgcagg	10	18	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	24607822	24607822	C	T	SNP	PSME1	ENST00000382708	human	ensembl	69_37n	1	known	missense	c.722	p.T241I	0.000	NULL	pfam_Proteasome_activ_REG_bsu,pfam_Proteasome_activ_REG_asu,superfamily_Proteasome_activ_REG_asu/bsu	-	no_errors	PSME1	HGNC	ENSG00000092010	68	0	0	71	27	27.55	-	-	-	T	24607822	C	T	24607822	3	4	550	1	0	0	0	0	1	0	0	0	12786	507	18	4	760	4	PSME1	14	24607822	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	34703	24607822	82741718	620	48682										
TSSK4	0	genome.wustl.edu	37	chr14	24675844	24675844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aatggatccagcgctacgggGcctgctctgagccccttgct	12	14	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	24675844	24675844	G	A	SNP	TSSK4	ENST00000339917	human	ensembl	69_37n	1	known	missense	c.355	p.A119T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TSSK4	HGNC	ENSG00000139908	111	0	0	145	21	12.65	-	-	-	A	24675844	G	A	24675844	3	1	550	1	0	0	0	0	1	0	0	0	16767	1203	42	4	361	4	TSSK4	14	24675844	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	68022	24675844	82673696	621	48683										
HEATR5A	0	genome.wustl.edu	37	chr14	31844039	31844039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taccacacagtgcaccagctCgtccttccagggtcacctgc	8	17	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	31844039	31844039	C	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.1826	p.R609Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	99	0	0	89	28	23.93	-	-	-	T	31844039	C	T	31844039	3	4	550	1	0	0	0	0	1	0	0	0	7082	884	31	1	4396	1	HEATR5A	14	31844039	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7168195	31844039	75505501	622	48684										
HEATR5A	0	genome.wustl.edu	37	chr14	31844166	31844166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaaggtgatggctaacaaCtgcaggacctgtaatttatt	10	7	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	31844166	31844166	C	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.1699	p.V567I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	57	0	0	42	22	34.38	-	-	-	T	31844166	C	T	31844166	3	4	550	1	0	0	0	0	1	0	0	0	7082	565	20	4	4523	4	HEATR5A	14	31844166	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	127	31844166	75505374	623	48685										
AKAP6	0	genome.wustl.edu	37	chr14	33015881	33015881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gactgggaactgtctgaaatGaattcagattctgaaatcta	9	6	4	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	33015881	33015881	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.2022	p.M674I	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	262	0	0	182	24	11.65	-	-	-	A	33015881	G	A	33015881	3	1	550	1	0	0	0	0	1	0	0	0	455	1290	45	2	2032	2	AKAP6	14	33015881	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1171715	33015881	74333659	624	48686										
FBXO33	0	genome.wustl.edu	37	chr14	39870860	39870860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcaagtgagtgcagattcaCaaatcgctccagttcaactg	10	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	39870860	39870860	C	T	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	missense	c.916	p.V306M	0.999	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	196	0	0	190	23	10.8	-	-	-	T	39870860	C	T	39870860	3	4	550	1	0	0	0	0	1	0	0	0	5789	478	17	4	759	4	FBXO33	14	39870860	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6854979	39870860	67478680	625	48687										
WDHD1	0	genome.wustl.edu	37	chr14	55429869	55429869	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagttccacacaacggaattCtcgctccagtttacaagaaa	6	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	55429869	55429869	C	T	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	missense	c.2332	p.E778K	1.000	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	64	0	0	62	11	15.07	-	-	-	T	55429869	C	T	55429869	3	4	550	1	0	0	0	0	1	0	0	0	17368	922	32	2	1089	2	WDHD1	14	55429869	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	15559009	55429869	51919671	626	48688										
MAPK1IP1L	0	genome.wustl.edu	37	chr14	55529834	55529834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgccatatccatctccaggcCcatatcccgctcctcctcct	4	20	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	55529834	55529834	C	T	SNP	MAPK1IP1L	ENST00000395468	human	ensembl	69_37n	1	known	missense	c.517	p.P173S	1.000	NULL	NULL	-	no_errors	MAPK1IP1L	HGNC	ENSG00000168175	86	0	0	105	31	22.79	-	-	-	T	55529834	C	T	55529834	3	4	550	1	0	0	0	0	1	0	0	0	9349	623	22	4	523	4	MAPK1IP1L	14	55529834	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	99965	55529834	51819706	627	48689										
KCNH5	0	genome.wustl.edu	37	chr14	63246532	63246532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtccaggactttgagcaaggCttcccgcttgatgatgtgta	12	9	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	63246532	63246532	C	T	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	missense	c.1933	p.A645T	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	128	0	0	120	20	14.29	-	-	-	T	63246532	C	T	63246532	3	4	550	1	0	0	0	0	1	0	0	0	8089	797	28	4	1075	4	KCNH5	14	63246532	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7716698	63246532	44103008	628	48690										
PLEKHG3	0	genome.wustl.edu	37	chr14	65208035	65208035	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgccaccctctgtgctggaCcaggccagcgtcattgcgga	12	15	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	65208035	65208035	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	69_37n	1	known	silent	c.1800	p.D600	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	15	0	0	12	5	29.41	-	-	-	T	65208035	C	T	65208035	2	4	550	1	0	0	0	0	0	0	0	1	12144	506	18	4		4	PLEKHG3	14	65208035	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1961503	65208035	42141505	629	48691										
EIF2S1	0	genome.wustl.edu	37	chr14	67831527	67831527	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttatcaacacaaatttcctGaggtggaagatgtagtgatg	10	5	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	67831527	67831527	G	A	SNP	EIF2S1	ENST00000256383	human	ensembl	69_37n	1	known	missense	c.43	p.E15K	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1	pfam_TIF_2_asu,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_TIF2_asu_C,superfamily_TIF2_asu_middle,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	EIF2S1	HGNC	ENSG00000134001	125	0	0	142	60	29.7	-	-	-	A	67831527	G	A	67831527	3	1	550	1	0	0	0	0	1	0	0	0	5044	1291	45	2	45	2	EIF2S1	14	67831527	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2623492	67831527	39518013	630	48692										
DCAF5	0	genome.wustl.edu	37	chr14	69520915	69520915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcgtccattgttgtggttggCacagatggtttcgaggctcc	14	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	69520915	69520915	C	T	SNP	DCAF5	ENST00000341516	human	ensembl	69_37n	-1	known	missense	c.2488	p.A830T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	45	0	0	72	38	34.55	-	-	-	T	69520915	C	T	69520915	3	4	550	1	0	0	0	0	1	0	0	0	4305	710	25	4	344	4	DCAF5	14	69520915	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1689388	69520915	37828625	631	48693										
SLC8A3	0	genome.wustl.edu	37	chr14	70633608	70633608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacaaggggaggctaggacaGcccgaggcaagggaagactg	17	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	70633608	70633608	G	A	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	missense	c.1532	p.A511V	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	188	1	0.53	180	28	13.46	-	-	-	A	70633608	G	A	70633608	3	1	550	1	0	0	0	0	1	0	0	0	14797	971	34	4	1390	4	SLC8A3	14	70633608	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1112693	70633608	36715932	632	48694										
SIPA1L1	0	genome.wustl.edu	37	chr14	72206007	72206007	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctactctgccccctttcgggGagtgcacaacacaatagttg	9	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	72206007	72206007	G	A	SNP	SIPA1L1	ENST00000554874	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.239	-	-	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	39	0	0	54	15	21.74	-	-	-	A	72206007	G	A	72206007	1	1	550	0	1	0	0	0	0	0	0	0	14418	1189	41	2		2	SIPA1L1	14	72206007	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1572399	72206007	35143533	633	48695										
LTBP2	0	genome.wustl.edu	37	chr14	74976478	74976478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cattcacccagtacccgttcTcacaggcagagcaggcgaag	10	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	74976478	74976478	T	C	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.3236	p.E1079G	0.008	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	47	0	0	13	5	26.32	-	-	-	C	74976478	T	C	74976478	3	2	550	1	0	0	0	0	1	0	0	0	9140	1551	54	5	2293	5	LTBP2	14	74976478	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	2770471	74976478	32373062	634	48696										
TGFB3	0	genome.wustl.edu	37	chr14	76446979	76446979	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggtgcagccttcctccctCtccccatgcatctcctccag	7	19	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	76446979	76446979	C	T	SNP	TGFB3	ENST00000238682	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	1.000	pfam_TGF-b_N,pirsf_TGF-beta,prints_Transform_grow_fac_b3	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699	140	0	0	78	15	16.13	-	-	-	T	76446979	C	T	76446979	2	4	550	1	0	0	0	0	0	0	0	1	15914	912	32	2		2	TGFB3	14	76446979	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1470501	76446979	30902561	635	48697										
ANGEL1	0	genome.wustl.edu	37	chr14	77274282	77274282	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacatcagggtcccagtgctGgaattcctgcatgaggttca	11	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	77274282	77274282	G	A	SNP	ANGEL1	ENST00000251089	human	ensembl	69_37n	-1	known	nonsense	c.859	p.Q287*	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523	101	0	0	79	28	26.17	-	-	-	A	77274282	G	A	77274282	4	1	550	1	0	0	0	0	0	1	0	0	608	1357	47	4	1185	4	ANGEL1	14	77274282	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	827303	77274282	30075258	636	48698										
C14orf166B	0	genome.wustl.edu	37	chr14	77294963	77294963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agagcagctgcagcttcccaCgcttgtcacctgcctcagga	10	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	77294963	77294963	C	T	SNP	C14orf166B	ENST00000216453	human	ensembl	69_37n	1	known	missense	c.289	p.R97C	0.000	NULL	NULL	-	no_errors	C14orf166B	HGNC	ENSG00000100565	13	0	0	20	23	53.49	-	-	-	T	77294963	C	T	77294963	3	4	550	1	0	0	0	0	1	0	0	0	1769	551	19	1		1	C14orf166B	14	77294963	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	20681	77294963	30054577	637	48699										
C14orf178	0	genome.wustl.edu	37	chr14	78227452	78227452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgaggaccccaatcaacaaCccacctggtgagcgccatct	8	16	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	78227452	78227452	C	T	SNP	C14orf178	ENST00000355883	human	ensembl	69_37n	1	known	missense	c.67	p.P23S	1.000	NULL	NULL	-	no_errors	C14orf178	HGNC	ENSG00000197734	64	0	0	46	25	35.21	-	-	-	T	78227452	C	T	78227452	3	4	550	1	0	0	0	0	1	0	0	0	1773	507	18	4	69	4	C14orf178	14	78227452	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	932489	78227452	29122088	638	48700										
CCDC88C	0	genome.wustl.edu	37	chr14	91780071	91780071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtccagctgcttgttgtcacGctccaggccctcaagctgca	10	15	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	91780071	91780071	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.2089	p.R697C	0.657	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	56	0	0	58	27	31.76	-	-	-	A	91780071	G	A	91780071	3	1	550	1	0	0	0	0	1	0	0	0	2892	1087	38	1	4061	1	CCDC88C	14	91780071	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13552619	91780071	15569469	639	48701										
CATSPERB	0	genome.wustl.edu	37	chr14	92102889	92102889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catctaaggaggtgtgctgtGgggcaagcgcagtctcaaag	15	8	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	92102889	92102889	G	A	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	missense	c.1622	p.P541L	0.785	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	130	0	0	62	13	17.33	-	-	-	A	92102889	G	A	92102889	3	1	550	1	0	0	0	0	1	0	0	0	2716	1348	47	4	1772	4	CATSPERB	14	92102889	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	322818	92102889	15246651	640	48702										
EML1	0	genome.wustl.edu	37	chr14	100376585	100376585	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actacattctacagaaacaaGaaaagccaaagtttgtcctc	5	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	100376585	100376585	G	A	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	missense	c.1303	p.E435K	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	110	0	0	114	32	21.92	-	-	-	A	100376585	G	A	100376585	3	1	550	1	0	0	0	0	1	0	0	0	5133	943	33	2	1353	2	EML1	14	100376585	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8273696	100376585	6972955	641	48703										
WDR25	0	genome.wustl.edu	37	chr14	100847475	100847475	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaagcatggctcctgtgaaGacccagggggctatcgcctt	12	12	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	100847475	100847475	G	A	SNP	WDR25	ENST00000335290	human	ensembl	69_37n	1	known	missense	c.214	p.D72N	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473	52	0	0	93	111	54.41	-	-	-	A	100847475	G	A	100847475	3	1	550	1	0	0	0	0	1	0	0	0	17379	942	33	2	216	2	WDR25	14	100847475	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	470890	100847475	6502065	642	48704										
DLK1	0	genome.wustl.edu	37	chr14	101198416	101198416	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcggccccctgtgccaacaaCaggacctgcgtgagcctgga	12	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	101198416	101198416	C	T	SNP	DLK1	ENST00000341267	human	ensembl	69_37n	1	known	silent	c.300	p.N100	0.017	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559	52	0	0	63	8	11.27	-	-	-	T	101198416	C	T	101198416	2	4	550	1	0	0	0	0	0	0	0	1	4600	477	17	4		4	DLK1	14	101198416	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	350941	101198416	6151124	643	48705										
PPP2R5C	0	genome.wustl.edu	37	chr14	102359336	102359336	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	taataaatgttctttttacaGtataattaatggatttgcct	5	4	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	102359336	102359336	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	69_37n	1	known	splice_site	c.783-1	e9-1	1.000	-	-	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	82	0	0	87	13	13	-	-	-	A	102359336	G	A	102359336	5	1	550	1	0	0	0	0	0	0	1	0	12471	1043	36	4	1084	4	PPP2R5C	14	102359336	Splice_Site	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1160920	102359336	4990204	644	48706										
CDC42BPB	0	genome.wustl.edu	37	chr14	103474889	103474889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attcttcattttgacaacagCaacctgcagtgcaaatgtga	7	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	103474889	103474889	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.271	p.A91T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	79	0	0	52	25	32.47	-	-	-	T	103474889	C	T	103474889	3	4	550	1	0	0	0	0	1	0	0	0	3102	710	25	4	5004	4	CDC42BPB	14	103474889	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1115553	103474889	3874651	645	48707										
CDCA4	0	genome.wustl.edu	37	chr14	105478143	105478143	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaaagctgcaacttcaccaGagacatgtccaggagcgact	10	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	14	105478143	105478143	G	A	SNP	CDCA4	ENST00000336219	human	ensembl	69_37n	-1	known	silent	c.124	p.L42	1.000	pfam_SERTA,pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779	58	0	0	43	10	18.87	-	-	-	A	105478143	G	A	105478143	2	1	550	1	0	0	0	0	0	0	0	1	3117	933	33	2		2	CDCA4	14	105478143	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2003254	105478143	1871397	646	48708										
BAHD1	0	genome.wustl.edu	37	chr15	40751151	40751151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgtgatcgtgctactggggGctggtcctcctccaagaagc	13	13	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	40751151	40751151	G	A	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	missense	c.488	p.G163D	0.873	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	26	0	0	22	11	33.33	-	-	-	A	40751151	G	A	40751151	3	1	550	1	0	0	0	0	1	0	0	0	1301	1203	42	4	490	4	BAHD1	15	40751151	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		40751151	61780241	647	48709										
CHAC1	0	genome.wustl.edu	37	chr15	41247843	41247843	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacaaccttgaatacttgctGcgtctggcagacttcatgca	8	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	41247843	41247843	G	A	SNP	CHAC1	ENST00000446533	human	ensembl	69_37n	1	known	silent	c.666	p.L222	1.000	pfam_ChaC	pfam_ChaC	-	no_errors	CHAC1	HGNC	ENSG00000128965	42	0	0	62	8	11.43	-	-	-	A	41247843	G	A	41247843	2	1	550	1	0	0	0	0	0	0	0	1	3337	1306	46	4		4	CHAC1	15	41247843	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	496692	41247843	61283549	648	48710										
TYRO3	0	genome.wustl.edu	37	chr15	41863285	41863285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgaagcaagaggatggctcCtttgtgaaagtggctgtgaa	14	6	0	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	41863285	41863285	C	T	SNP	TYRO3	ENST00000568343	human	ensembl	69_37n	1	novel	missense	c.73	p.L25F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TYRO3	HGNC	ENSG00000092445	120	0	0	120	44	26.83	-	-	-	T	41863285	C	T	41863285	3	4	550	1	0	0	0	0	1	0	0	0	16911	668	24	4	1679	4	TYRO3	15	41863285	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	615442	41863285	60668107	649	48711										
ZFP106	0	genome.wustl.edu	37	chr15	42742652	42742652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctttcatcttctagtgcgtgCacttgaaactcaattttcaa	5	10	5	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	42742652	42742652	C	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	silent	c.1749	p.V583	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	442	0	0	550	146	20.98	-	-	-	T	42742652	C	T	42742652	2	4	550	1	0	0	0	0	0	0	0	1	17733	697	25	4		4	ZFP106	15	42742652	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	879367	42742652	59788740	650	48712										
HAUS2	0	genome.wustl.edu	37	chr15	42858845	42858845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggatatattggtgactgagaCagaagaactggcagagaata	13	4	0	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	42858845	42858845	C	T	SNP	HAUS2	ENST00000260372	human	ensembl	69_37n	1	known	missense	c.539	p.T180I	1.000	NULL	NULL	-	no_errors	HAUS2	HGNC	ENSG00000137814	102	0	0	89	10	10.1	-	-	-	T	42858845	C	T	42858845	3	4	550	1	0	0	0	0	1	0	0	0	7017	478	17	4	561	4	HAUS2	15	42858845	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	116193	42858845	59672547	651	48713										
TP53BP1	0	genome.wustl.edu	37	chr15	43712710	43712710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctacaacacggagccctaCaaagctatttcctggagagg	11	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	43712710	43712710	C	T	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.4474	p.V1492I	1.000	pfam_53-BP1_Tudor	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	341	0	0	393	49	11.06	-	-	-	T	43712710	C	T	43712710	3	4	550	1	0	0	0	0	1	0	0	0	16479	478	17	4	1491	4	TP53BP1	15	43712710	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	853865	43712710	58818682	652	48714										
CATSPER2	0	genome.wustl.edu	37	chr15	43931841	43931841	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcttgcaacagtcaaatcacCttgagggccctgaccaggac	10	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	43931841	43931841	C	T	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	silent	c.717	p.K239	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	258	0	0	314	83	20.85	-	-	-	T	43931841	C	T	43931841	2	4	550	1	0	0	0	0	0	0	0	1	2713	695	24	4		4	CATSPER2	15	43931841	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	219131	43931841	58599551	653	48715										
DUOXA1	0	genome.wustl.edu	37	chr15	45409943	45409943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctcttcctcggaggggccGtggtgagtctccagtatgtt	14	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	45409943	45409943	G	A	SNP	DUOXA1	ENST00000267803	human	ensembl	69_37n	-1	known	missense	c.1222	p.R408W	0.981	NULL	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA1	HGNC	ENSG00000140254	36	0	0	24	13	35.14	-	-	-	A	45409943	G	A	45409943	3	1	550	1	0	0	0	0	1	0	0	0	4837	1145	40	1	233	1	DUOXA1	15	45409943	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1478102	45409943	57121449	654	48716										
AP4E1	0	genome.wustl.edu	37	chr15	51204292	51204292	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caggaagaagaaaaattaatCcagcaggaactgagtagtct	10	6	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	51204292	51204292	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	silent	c.168	p.I56	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	79	0	0	89	16	15.24	-	-	-	T	51204292	C	T	51204292	2	4	550	1	0	0	0	0	0	0	0	1	753	845	30	2		2	AP4E1	15	51204292	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	5794349	51204292	51327100	655	48717										
LEO1	0	genome.wustl.edu	37	chr15	52258692	52258692	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagaatctgagtcagatccaGaatcagaatctatggggtca	10	8	5	5			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	52258692	52258692	G	A	SNP	LEO1	ENST00000299601	human	ensembl	69_37n	-1	known	missense	c.68	p.S23F	1.000	NULL	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477	220	0	0	280	147	34.43	-	-	-	A	52258692	G	A	52258692	3	1	550	1	0	0	0	0	1	0	0	0	8780	942	33	2	1976	2	LEO1	15	52258692	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1054400	52258692	50272700	656	48718										
MYO5A	0	genome.wustl.edu	37	chr15	52662437	52662437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctctgaacgagtttgctccaGgtctttccggagcttggcaa	11	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	52662437	52662437	G	A	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	silent	c.2995	p.L999	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	151	0	0	137	20	12.74	-	-	-	A	52662437	G	A	52662437	2	1	550	1	0	0	0	0	0	0	0	1	10150	991	35	4		4	MYO5A	15	52662437	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	403745	52662437	49868955	657	48719										
CGNL1	0	genome.wustl.edu	37	chr15	57730764	57730764	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcaacaataagaagccttgGacttgctttcccaaacctag	6	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	57730764	57730764	G	A	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	nonsense	c.567	p.W189*	0.980	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	348	0	0	243	52	17.63	-	-	-	A	57730764	G	A	57730764	4	1	550	1	0	0	0	0	0	1	0	0	3333	1183	41	2	569	2	CGNL1	15	57730764	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5068327	57730764	44800628	658	48720										
DAPK2	0	genome.wustl.edu	37	chr15	64332425	64332425	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accttctgctgcttgaatggCtccatgtttggactcctcat	8	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	64332425	64332425	C	T	SNP	DAPK2	ENST00000261891	human	ensembl	69_37n	-1	known	silent	c.36	p.E12	0.975	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664	169	0	0	67	8	10.67	-	-	-	T	64332425	C	T	64332425	2	4	550	1	0	0	0	0	0	0	0	1	4268	796	28	4		4	DAPK2	15	64332425	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6601661	64332425	38198967	659	48721										
IGDCC3	0	genome.wustl.edu	37	chr15	65621902	65621902	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cggggaccctgtggaggggaCagctggttttccacatcttt	14	10	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	65621902	65621902	C	T	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	silent	c.2031	p.L677	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	46	0	0	75	12	13.79	-	-	-	T	65621902	C	T	65621902	2	4	550	1	0	0	0	0	0	0	0	1	7622	465	17	4		4	IGDCC3	15	65621902	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1289477	65621902	36909490	660	48722										
STOML1	0	genome.wustl.edu	37	chr15	74276416	74276416	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgcaggtctgcctcggccatCtccaccaccacatcagggat	9	17	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	74276416	74276416	C	T	SNP	STOML1	ENST00000316900	human	ensembl	69_37n	-1	known	silent	c.1059	p.E353	0.960	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_Band_7,pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom,smart_Band_7,prints_Stomatin	-	no_errors	STOML1	HGNC	ENSG00000067221	22	0	0	13	41	74.55	-	-	-	T	74276416	C	T	74276416	2	4	550	1	0	0	0	0	0	0	0	1	15404	912	32	2		2	STOML1	15	74276416	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	8654514	74276416	28254976	661	48723										
STOML1	0	genome.wustl.edu	37	chr15	74277124	74277124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctgtagagcagtcagtagCccctccgccagaggctgctt	13	13	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	74277124	74277124	C	T	SNP	STOML1	ENST00000316900	human	ensembl	69_37n	-1	known	silent	c.879	p.G293	1.000	superfamily_SCP2_sterol-bd_dom	pfam_Band_7,pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom,smart_Band_7,prints_Stomatin	-	no_errors	STOML1	HGNC	ENSG00000067221	19	0	0	22	71	76.34	-	-	-	T	74277124	C	T	74277124	2	4	550	1	0	0	0	0	0	0	0	1	15404	726	26	4		4	STOML1	15	74277124	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	708	74277124	28254268	662	48724										
ARID3B	0	genome.wustl.edu	37	chr15	74883593	74883593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaccgcagggagggccggcGgcccagctacagctcctccc	13	18	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	74883593	74883593	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	69_37n	1	known	missense	c.983	p.R328Q	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361	125	0	0	89	10	10.1	-	-	-	A	74883593	G	A	74883593	3	1	550	1	0	0	0	0	1	0	0	0	919	1116	39	1	1001	1	ARID3B	15	74883593	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	606469	74883593	27647799	663	48725										
LMAN1L	0	genome.wustl.edu	37	chr15	75111541	75111541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgatccaggtgagttctgtGtggatgtggggcccctgctt	16	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	75111541	75111541	G	A	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	missense	c.646	p.V216M	0.011	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	57	0	0	32	9	21.95	-	-	-	A	75111541	G	A	75111541	3	1	550	1	0	0	0	0	1	0	0	0	8893	1377	48	4	668	4	LMAN1L	15	75111541	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	227948	75111541	27419851	664	48726										
LMAN1L	0	genome.wustl.edu	37	chr15	75117920	75117920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggggattctgaggaggcagCctctccctgccagcatgcct	13	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	75117920	75117920	C	T	SNP	LMAN1L	ENST00000309664	human	ensembl	69_37n	1	known	missense	c.1555	p.P519S	0.965	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN1L	HGNC	ENSG00000140506	108	0	0	97	23	19.17	-	-	-	T	75117920	C	T	75117920	3	4	550	1	0	0	0	0	1	0	0	0	8893	739	26	4	1609	4	LMAN1L	15	75117920	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6379	75117920	27413472	665	48727										
RCN2	0	genome.wustl.edu	37	chr15	77227866	77227867	+	Frame_Shift_Ins	INS	-	-	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttctgggaaattctcatagINSgtgaactcagttcatggatt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	77227866	77227867	-	T	INS	RCN2	ENST00000394885	human	ensembl	69_37n	1	known	frame_shift_ins	c.252_251	p.S84fs	1.000:1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN2	HGNC	ENSG00000117906	51	0	0	52	21	28.77	-	-	-	T	77227867	-	T	77227866	7	5	550	1	0	1	1	0	0	0	0	0	13263	1014	35	0	260	0	RCN2	15	77227866	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	2109946	77227866	25303526	666	48728	404	2								
RCN2	0	genome.wustl.edu	37	chr15	77227868	77227868	+	Missense_Mutation	SNP	T	T	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctgggaaattctcataggTgaactcagttcatggattca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	77227868	77227868	T	A	SNP	RCN2	ENST00000394885	human	ensembl	69_37n	1	known	missense	c.252	p.S84R	0.999	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN2	HGNC	ENSG00000117906	51	0	0	52	23	30.67	-	-	-	A	77227868	T	A	77227868	3	1	550	1	0	0	0	0	1	0	0	0	13263	1710	59	5	262	5	RCN2	15	77227868	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	2	77227868	25303524	667	48729	404	2								
IDH3A	0	genome.wustl.edu	37	chr15	78454029	78454029	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatgtgtctctatcgaaggCtataaaaccccttacaccga	6	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	78454029	78454029	C	T	SNP	IDH3A	ENST00000299518	human	ensembl	69_37n	1	known	silent	c.396	p.G132	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3A	HGNC	ENSG00000166411	188	0	0	191	30	13.57	-	-	-	T	78454029	C	T	78454029	2	4	550	1	0	0	0	0	0	0	0	1	7550	784	28	4		4	IDH3A	15	78454029	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1226161	78454029	24077363	668	48730										
TMC3	0	genome.wustl.edu	37	chr15	81644152	81644152	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagagaagcaccaggatgttGgcaataatcctcaggcagat	12	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	81644152	81644152	G	A	SNP	TMC3	ENST00000359440	human	ensembl	69_37n	-1	known	silent	c.966	p.A322	1.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869	32	0	0	14	8	36.36	-	-	-	A	81644152	G	A	81644152	2	1	550	1	0	0	0	0	0	0	0	1	16081	1335	47	4		4	TMC3	15	81644152	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3190123	81644152	20887240	669	48731										
FAM154B	0	genome.wustl.edu	37	chr15	82575373	82575373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	caaggtcataaattcttccgCaagattattcctgcagtgaa	7	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	82575373	82575373	C	T	SNP	FAM154B	ENST00000339465	human	ensembl	69_37n	1	known	silent	c.1167	p.R389	0.999	NULL	NULL	-	no_errors	FAM154B	HGNC	ENSG00000188659	115	1	0.86	78	17	17.89	-	-	-	T	82575373	C	T	82575373	2	4	550	1	0	0	0	0	0	0	0	1	5504	697	25	4		4	FAM154B	15	82575373	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	931221	82575373	19956019	670	48732										
PDE8A	0	genome.wustl.edu	37	chr15	85669545	85669545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgatgtgtccaatccctgCcgacccctgcagtactgcat	9	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	85669545	85669545	C	T	SNP	PDE8A	ENST00000310298	human	ensembl	69_37n	1	known	silent	c.2193	p.C731	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417	173	0	0	115	29	20.14	-	-	-	T	85669545	C	T	85669545	2	4	550	1	0	0	0	0	0	0	0	1	11726	747	26	4		4	PDE8A	15	85669545	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3094172	85669545	16861847	671	48733										
AKAP13	0	genome.wustl.edu	37	chr15	86123221	86123221	+	Missense_Mutation	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcagaaacaaattcatctcAtgctcaaagccaaaagggca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	86123221	86123221	A	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.1922	p.H641L	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	236	0	0	137	17	11.04	-	-	-	T	86123221	A	T	86123221	3	4	550	1	0	0	0	0	1	0	0	0	449	217	8	5	1944	5	AKAP13	15	86123221	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	453676	86123221	16408171	672	48734	405	2								
AKAP13	0	genome.wustl.edu	37	chr15	86123222	86123222	+	Missense_Mutation	SNP	T	T	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcagaaacaaattcatctcaTgctcaaagccaaaagggcaa							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	86123222	86123222	T	G	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.1923	p.H641Q	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	239	0	0	141	17	10.76	-	-	-	G	86123222	T	G	86123222	3	3	550	1	0	0	0	0	1	0	0	0	449	1461	51	5	1945	5	AKAP13	15	86123222	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1	86123222	16408170	673	48735	405	2								
AKAP13	0	genome.wustl.edu	37	chr15	86286812	86286812	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatctgcaccttccatagcCaaatcagggtcattggactc	7	14	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	86286812	86286812	C	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	silent	c.8160	p.A2720	0.100	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	224	0	0	162	18	10	-	-	-	A	86286812	C	A	86286812	2	1	550	1	0	0	0	0	0	0	0	1	449	581	21	4		4	AKAP13	15	86286812	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	163590	86286812	16244580	674	48736										
AGBL1	0	genome.wustl.edu	37	chr15	86807530	86807530	+	Frame_Shift_Del	DEL	G	G	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gatgatttgaactctgaaaaGactcagtatgccaatcacca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	86807530	86807530	G	-	DEL	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	frame_shift_del	c.990	p.T331fs	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	71	0	0	56	11	16.18	-	-	-	-	86807530	G	-	86807530	7	5	550	1	0	1	0	1	0	0	0	0	375	933	33	0	1024	0	AGBL1	15	86807530	Frame_Shift_Del	DEL	G	TCGA-BH-A0HF-01A-11W-A071-09	520718	86807530	15723862	675	48737	406	2								
AGBL1	0	genome.wustl.edu	37	chr15	86807532	86807532	+	Missense_Mutation	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgatttgaactctgaaaagaCtcagtatgccaatcaccacc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	86807532	86807532	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.992	p.T331I	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	79	0	0	61	13	17.33	-	-	-	T	86807532	C	T	86807532	3	4	550	1	0	0	0	0	1	0	0	0	375	565	20	4	1026	4	AGBL1	15	86807532	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2	86807532	15723860	676	48738	406	2								
ANPEP	0	genome.wustl.edu	37	chr15	90349716	90349716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcttgttcttctcctgggaGtacaccactgacagtgcgat	9	11	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	90349716	90349716	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	silent	c.99	p.Y33	0.081	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	51	0	0	56	14	20	-	-	-	A	90349716	G	A	90349716	2	1	550	1	0	0	0	0	0	0	0	1	709	1024	36	4		4	ANPEP	15	90349716	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3542184	90349716	12181676	677	48739										
MAN2A2	0	genome.wustl.edu	37	chr15	91456166	91456166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaggccctttcttctcagaGgtggttgcgtactatgagca	12	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	91456166	91456166	G	A	SNP	MAN2A2	ENST00000561448	human	ensembl	69_37n	1	known	missense	c.157	p.G53S	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2A2	HGNC	ENSG00000196547	42	0	0	34	4	10.53	-	-	-	A	91456166	G	A	91456166	3	1	550	1	0	0	0	0	1	0	0	0	9286	991	35	4	2591	4	MAN2A2	15	91456166	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1106450	91456166	11075226	678	48740										
IGF1R	0	genome.wustl.edu	37	chr15	99500505	99500505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccctcggcctcctcgtcctCcctgccactgcccgacagac	7	23	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	99500505	99500505	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.3938	p.S1313F	0.998	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	27	0	0	39	7	15.22	-	-	-	T	99500505	C	T	99500505	3	4	550	1	0	0	0	0	1	0	0	0	7625	855	30	2	4020	2	IGF1R	15	99500505	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	8044339	99500505	3030887	679	48741										
SYNM	0	genome.wustl.edu	37	chr15	99670382	99670382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtgaaggatgctggtggtgGgaccggtagagaggcagaag	20	4	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	99670382	99670382	G	A	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	missense	c.1814	p.G605E	0.006	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	56	0	0	53	11	17.19	-	-	-	A	99670382	G	A	99670382	3	1	550	1	0	0	0	0	1	0	0	0	15547	1232	43	4	1830	4	SYNM	15	99670382	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	169877	99670382	2861010	680	48742										
CHSY1	0	genome.wustl.edu	37	chr15	101775743	101775743	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgtcagaaccctcacttgaGaagaactgaactttcccagg	9	11	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	15	101775743	101775743	G	A	SNP	CHSY1	ENST00000254190	human	ensembl	69_37n	-1	known	silent	c.360	p.F120	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873	198	0	0	210	62	22.79	-	-	-	A	101775743	G	A	101775743	2	1	550	1	0	0	0	0	0	0	0	1	3441	933	33	2		2	CHSY1	15	101775743	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2105361	101775743	755649	681	48743										
RAB26	0	genome.wustl.edu	37	chr16	2201891	2201891	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacgatgtcaccaacaaggcCtcctttgacaacatccaggt	7	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	2201891	2201891	C	T	SNP	RAB26	ENST00000210187	human	ensembl	69_37n	1	known	silent	c.450	p.A150	0.988	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB26	HGNC	ENSG00000167964	14	0	0	61	174	74.04	-	-	-	T	2201891	C	T	2201891	2	4	550	1	0	0	0	0	0	0	0	1	12996	668	24	4		4	RAB26	16	2201891	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		2201891	88152862	682	48744										
PDPK1	0	genome.wustl.edu	37	chr16	2645822	2645822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgtagaaaataatttaataCtaaagatgggcccagtggat	9	4	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	2645822	2645822	C	T	SNP	PDPK1	ENST00000342085	human	ensembl	69_37n	1	known	silent	c.1372	p.L458	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PDPK1	HGNC	ENSG00000140992	79	0	0	57	17	22.97	-	-	-	T	2645822	C	T	2645822	2	4	550	1	0	0	0	0	0	0	0	1	11760	564	20	4		4	PDPK1	16	2645822	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	443931	2645822	87708931	683	48745										
CLEC16A	0	genome.wustl.edu	37	chr16	11219844	11219844	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtttgaccgtagccctcctgGacctcccaatccagcccacc	7	19	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	11219844	11219844	G	A	SNP	CLEC16A	ENST00000428742	human	ensembl	69_37n	1	putative	nonsense	c.213	p.W71*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CLEC16A	HGNC	ENSG00000038532	160	0	0	123	36	22.64	-	-	-	A	11219844	G	A	11219844	4	1	550	1	0	0	0	0	0	1	0	0	3530	1174	41	2	2564	2	CLEC16A	16	11219844	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8574022	11219844	79134909	684	48746										
SNX29	0	genome.wustl.edu	37	chr16	12145796	12145796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgagcagaactctggggacGtgtttaaaaagacacctggg	13	7	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	12145796	12145796	G	A	SNP	SNX29	ENST00000268271	human	ensembl	69_37n	1	known	missense	c.841	p.V281M	0.020	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	SNX29	HGNC	ENSG00000048471	163	0	0	120	27	18.37	-	-	-	A	12145796	G	A	12145796	3	1	550	1	0	0	0	0	1	0	0	0	14987	1145	40	1		1	SNX29	16	12145796	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	925952	12145796	78208957	685	48747										
TMC5	0	genome.wustl.edu	37	chr16	19483509	19483509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagcctgggttgtctctacaGgagtggccatagcctgctgt	13	10	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	19483509	19483509	G	A	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.1882	p.G628R	0.448	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	85	0	0	71	15	17.44	-	-	-	A	19483509	G	A	19483509	3	1	550	1	0	0	0	0	1	0	0	0	16083	1001	35	4	2230	4	TMC5	16	19483509	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7337713	19483509	70871244	686	48748										
PDILT	0	genome.wustl.edu	37	chr16	20396157	20396157	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccgccaagttcctggattgCtttgaggatgggttgtctga	13	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	20396157	20396157	C	T	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	silent	c.219	p.K73	0.142	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	196	0	0	124	14	10.14	-	-	-	T	20396157	C	T	20396157	2	4	550	1	0	0	0	0	0	0	0	1	11747	796	28	4		4	PDILT	16	20396157	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	912648	20396157	69958596	687	48749										
ACSM2B	0	genome.wustl.edu	37	chr16	20554525	20554525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatcttcatctttgattccCcggtctccaaggagccaaaa	6	14	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	20554525	20554525	C	T	SNP	ACSM2B	ENST00000568098	human	ensembl	69_37n	-1	novel	missense	c.74	p.G25E	0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACSM2B	HGNC	ENSG00000066813	427	0	0	357	113	24.04	-	-	-	T	20554525	C	T	20554525	3	4	550	1	0	0	0	0	1	0	0	0	184	610	22	4	408	4	ACSM2B	16	20554525	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	158368	20554525	69800228	688	48750										
UQCRC2	0	genome.wustl.edu	37	chr16	21983441	21983441	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggcaactcagcagccatttGatgtgagtctgaacagttgg	12	8	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	21983441	21983441	G	A	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	missense	c.964	p.D322N	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	62	0	0	59	15	20.27	-	-	-	A	21983441	G	A	21983441	3	1	550	1	0	0	0	0	1	0	0	0	17117	1290	45	2	1002	2	UQCRC2	16	21983441	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1428916	21983441	68371312	689	48751										
HS3ST4	0	genome.wustl.edu	37	chr16	26147545	26147545	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actggtcaagattttcagtgGgaacaggaagagggtgataa	14	4	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	26147545	26147545	G	A	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	nonsense	c.1347	p.W449*	1.000	NULL	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	83	0	0	60	27	31.03	-	-	-	A	26147545	G	A	26147545	4	1	550	1	0	0	0	0	0	1	0	0	7418	1241	43	4	1353	4	HS3ST4	16	26147545	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4164104	26147545	64207208	690	48752										
IL4R	0	genome.wustl.edu	37	chr16	27374933	27374933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgtggagacaggtcctcgCcccctacaacccccctgagg	11	17	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	27374933	27374933	C	T	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.2260	p.P754S	0.012	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	96	0	0	37	9	19.15	-	-	-	T	27374933	C	T	27374933	3	4	550	1	0	0	0	0	1	0	0	0	7752	739	26	4	2312	4	IL4R	16	27374933	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1227388	27374933	62979820	691	48753										
C16orf92	0	genome.wustl.edu	37	chr16	30035131	30035131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctgacttcttcgattatCcggactcagaccaagccagg	9	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	30035131	30035131	C	T	SNP	C16orf92	ENST00000300575	human	ensembl	69_37n	1	known	missense	c.214	p.P72S	0.998	NULL	NULL	-	no_errors	C16orf92	HGNC	ENSG00000167194	27	0	0	38	20	34.48	-	-	-	T	30035131	C	T	30035131	3	4	550	1	0	0	0	0	1	0	0	0	1858	855	30	2	234	2	C16orf92	16	30035131	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2660198	30035131	60319622	692	48754										
NETO2	0	genome.wustl.edu	37	chr16	47163219	47163219	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgacctccattgctggttcGaacccaaatgccacactggg	9	13	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	47163219	47163219	G	A	SNP	NETO2	ENST00000562435	human	ensembl	69_37n	-1	known	nonsense	c.148	p.R50*	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208	231	0	0	137	61	30.81	-	-	-	A	47163219	G	A	47163219	4	1	550	1	0	0	0	0	0	1	0	0	10412	1066	37	1	1457	1	NETO2	16	47163219	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	17128088	47163219	43191534	693	48755										
ABCC12	0	genome.wustl.edu	37	chr16	48120416	48120416	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accaacctcagagcattgtaGtaaggaccaagtgagatgat	10	8	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	48120416	48120416	G	A	SNP	ABCC12	ENST00000532355	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCC12	HGNC	ENSG00000140798	20	0	0	26	7	21.21	-	-	-	A	48120416	G	A	48120416	1	1	550	0	1	0	0	0	0	0	0	0	52	1044	36	4		4	ABCC12	16	48120416	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	957197	48120416	42234337	694	48756										
ABCC11	0	genome.wustl.edu	37	chr16	48248819	48248819	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgtgagtttcagctttaaGgatgtgtggatgagaaccca	13	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	48248819	48248819	G	A	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	silent	c.1221	p.S407	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	125	0	0	68	17	20	-	-	-	A	48248819	G	A	48248819	2	1	550	1	0	0	0	0	0	0	0	1	51	987	35	4		4	ABCC11	16	48248819	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	128403	48248819	42105934	695	48757										
MMP2	0	genome.wustl.edu	37	chr16	55532334	55532334	+	Nonsense_Mutation	SNP	C	C	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaaaaacaagaagacataCatctttgctggagacaaatt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	55532334	55532334	C	A	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	nonsense	c.1743	p.Y581*	1.000	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	85	0	0	84	28	25	-	-	-	A	55532334	C	A	55532334	4	1	550	1	0	0	0	0	0	1	0	0	9729	489	17	4	1792	4	MMP2	16	55532334	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7283515	55532334	34822419	696	48758	407	2								
MMP2	0	genome.wustl.edu	37	chr16	55532335	55532335	+	Missense_Mutation	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaaaaacaagaagacatacAtctttgctggagacaaattc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	55532335	55532335	A	T	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	missense	c.1744	p.I582F	1.000	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	86	0	0	86	16	15.69	-	-	-	T	55532335	A	T	55532335	3	4	550	1	0	0	0	0	1	0	0	0	9729	217	8	5	1793	5	MMP2	16	55532335	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1	55532335	34822418	697	48759	407	2								
NLRC5	0	genome.wustl.edu	37	chr16	57112966	57112966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctcctctttccccagcctaCcattcagccatctgggccca	5	19	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	57112966	57112966	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.5086	p.P1696S	0.043	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	49	0	0	48	8	14.29	-	-	-	T	57112966	C	T	57112966	3	4	550	1	0	0	0	0	1	0	0	0	10542	507	18	4	5252	4	NLRC5	16	57112966	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1580631	57112966	33241787	698	48760										
GPR56	0	genome.wustl.edu	37	chr16	57685109	57685109	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atctgcagcctctgcctcctCaggtgcccacggcaggggcc	12	17	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	57685109	57685109	C	T	SNP	GPR56	ENST00000569154	human	ensembl	69_37n	1	novel	nonsense	c.103	p.Q35*	0.996	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	GPR56	HGNC	ENSG00000205336	43	0	0	30	6	16.67	-	-	-	T	57685109	C	T	57685109	4	4	550	1	0	0	0	0	0	1	0	0	6750	838	29	2	83	2	GPR56	16	57685109	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	572143	57685109	32669644	699	48761										
GPR56	0	genome.wustl.edu	37	chr16	57695732	57695732	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atcctgcggctgcgcccccaCacccaaaagtggtcacatgt	9	16	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	57695732	57695732	C	T	SNP	GPR56	ENST00000379696	human	ensembl	69_37n	1	known	silent	c.1806	p.H602	0.147	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like	-	no_errors	GPR56	HGNC	ENSG00000205336	52	0	0	27	7	20.59	-	-	-	T	57695732	C	T	57695732	2	4	550	1	0	0	0	0	0	0	0	1	6750	477	17	4		4	GPR56	16	57695732	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	10623	57695732	32659021	700	48762										
SLC38A7	0	genome.wustl.edu	37	chr16	58713828	58713828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgctgggaagttgagtaacCctgcacccaggcacgcgttg	13	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	58713828	58713828	C	T	SNP	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	missense	c.203	p.G68E	0.998	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	26	0	0	22	15	40.54	-	-	-	T	58713828	C	T	58713828	3	4	550	1	0	0	0	0	1	0	0	0	14698	623	22	4	1225	4	SLC38A7	16	58713828	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1018096	58713828	31640925	701	48763										
WWP2	0	genome.wustl.edu	37	chr16	69951724	69951724	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcgcaactatgagcagtggCagtcgcagcggaatcagctc	13	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	69951724	69951724	C	T	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	nonsense	c.1117	p.Q373*	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	96	0	0	115	18	13.53	-	-	-	T	69951724	C	T	69951724	4	4	550	1	0	0	0	0	0	1	0	0	17513	711	25	4	1155	4	WWP2	16	69951724	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	11237896	69951724	20403029	702	48764										
PMFBP1	0	genome.wustl.edu	37	chr16	72159258	72159258	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctttcttctcttgggtctgtGtcaagctttgctgcaggctc	10	11	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	72159258	72159258	G	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.2315	p.T772K	0.002	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	242	0	0	121	34	21.94	-	-	-	T	72159258	G	T	72159258	3	4	550	1	0	0	0	0	1	0	0	0	12208	1377	48	4	807	4	PMFBP1	16	72159258	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2207534	72159258	18195495	703	48765										
CHST5	0	genome.wustl.edu	37	chr16	75563695	75563695	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggttgaagaagcgcacctcCttgagcaccacgtggctgta	12	11	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	75563695	75563695	C	T	SNP	CHST5	ENST00000541075	human	ensembl	69_37n	-1	known	silent	c.606	p.K202	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702	27	0	0	33	18	35.29	-	-	-	T	75563695	C	T	75563695	2	4	550	1	0	0	0	0	0	0	0	1	3436	680	24	4		4	CHST5	16	75563695	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3404437	75563695	14791058	704	48766										
PKD1L2	0	genome.wustl.edu	37	chr16	81214820	81214820	+	Missense_Mutation	SNP	G	G	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggagagtcctcccccatgGtgaccctgagcagaatgtct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	81214820	81214820	G	A	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.2054	p.T685I	0.859	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	156	0	0	59	8	11.94	-	-	-	A	81214820	G	A	81214820	3	1	550	1	0	0	0	0	1	0	0	0	12039	1261	44	4	5522	4	PKD1L2	16	81214820	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5651125	81214820	9139933	705	48767	408	2								
PKD1L2	0	genome.wustl.edu	37	chr16	81214823	81214823	+	Missense_Mutation	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagagtcctcccccatggtgAccctgagcagaatgtctttg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	81214823	81214823	A	T	SNP	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	missense	c.2051	p.V684D	0.990	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	155	0	0	59	58	49.57	-	-	-	T	81214823	A	T	81214823	3	4	550	1	0	0	0	0	1	0	0	0	12039	275	10	5	5525	5	PKD1L2	16	81214823	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	3	81214823	9139930	706	48768	408	2								
SDR42E1	0	genome.wustl.edu	37	chr16	82032822	82032822	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actccgagtcacgacttccaGaacttctgccatgaccatgg	8	14	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	82032822	82032822	G	A	SNP	SDR42E1	ENST00000328945	human	ensembl	69_37n	-1	known	missense	c.1076	p.S359F	0.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like	-	no_errors	SDR42E1	HGNC	ENSG00000184860	186	0	0	112	71	38.59	-	-	-	A	82032822	G	A	82032822	3	1	550	1	0	0	0	0	1	0	0	0	14061	942	33	2	109	2	SDR42E1	16	82032822	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	817999	82032822	8321931	707	48769										
HSD17B2	0	genome.wustl.edu	37	chr16	82104721	82104721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agggaggctggtgaatgtcaGcagcatgggaggtgagtcag	19	5	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	82104721	82104721	G	A	SNP	HSD17B2	ENST00000199936	human	ensembl	69_37n	1	known	missense	c.653	p.S218N	1.000	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696	139	0	0	91	27	22.88	-	-	-	A	82104721	G	A	82104721	3	1	550	1	0	0	0	0	1	0	0	0	7435	971	34	4	663	4	HSD17B2	16	82104721	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	71899	82104721	8250032	708	48770										
MLYCD	0	genome.wustl.edu	37	chr16	83948797	83948797	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagctggtgcgggcgctgcaGactccgctgatgaggctgtg	17	10	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	83948797	83948797	G	A	SNP	MLYCD	ENST00000262430	human	ensembl	69_37n	1	known	silent	c.1185	p.Q395	1.000	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150	43	0	0	83	11	11.7	-	-	-	A	83948797	G	A	83948797	2	1	550	1	0	0	0	0	0	0	0	1	9709	933	33	2		2	MLYCD	16	83948797	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1844076	83948797	6405956	709	48771										
ZCCHC14	0	genome.wustl.edu	37	chr16	87445970	87445970	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagtttgcccagaaatggcaGaatcagcaggaacagatgac	11	8	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	87445970	87445970	G	A	SNP	ZCCHC14	ENST00000268616	human	ensembl	69_37n	-1	known	missense	c.1946	p.S649F	0.034	NULL	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948	105	0	0	93	41	30.6	-	-	-	A	87445970	G	A	87445970	3	1	550	1	0	0	0	0	1	0	0	0	17679	942	33	2	911	2	ZCCHC14	16	87445970	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3497173	87445970	2908783	710	48772										
ZC3H18	0	genome.wustl.edu	37	chr16	88696911	88696911	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggttctcgggaccggaagtCaggtgggagactgggctccc	17	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	16	88696911	88696911	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	69_37n	1	known	missense	c.2585	p.S862L	0.984	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545	11	0	0	7	6	46.15	-	-	-	T	88696911	C	T	88696911	3	4	550	1	0	0	0	0	1	0	0	0	17664	838	29	2	2647	2	ZC3H18	16	88696911	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1250941	88696911	1657842	711	48773										
PITPNA	0	genome.wustl.edu	37	chr17	1444910	1444910	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccaggtttcaattttaatcaGaaagtcttctttcatgtact	5	8	5	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	1444910	1444910	G	A	SNP	PITPNA	ENST00000574991	human	ensembl	69_37n	-1	novel	missense	c.194	p.S65F	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_start_codon:pseudogene:no_stop_codon	PITPNA	HGNC	ENSG00000174238	34	0	0	35	10	22.22	-	-	-	A	1444910	G	A	1444910	3	1	550	1	0	0	0	0	1	0	0	0	12021	933	33	2	514	2	PITPNA	17	1444910	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		1444910	79750300	712	48774										
SMG6	0	genome.wustl.edu	37	chr17	2147960	2147960	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgcacacttacccaatccgGgtaaacagcttcccatgggc	8	15	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	2147960	2147960	G	A	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	silent	c.2715	p.T905	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	78	0	0	82	10	10.87	-	-	-	A	2147960	G	A	2147960	2	1	550	1	0	0	0	0	0	0	0	1	14886	1219	43	4		4	SMG6	17	2147960	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	703050	2147960	79047250	713	48775										
CAMKK1	0	genome.wustl.edu	37	chr17	3776721	3776721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accttcccatagacaaagcaGtacaacgtgacgccagtggc	9	13	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	3776721	3776721	G	A	SNP	CAMKK1	ENST00000381771	human	ensembl	69_37n	-1	known	silent	c.1146	p.Y382	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	155	0	0	121	17	12.32	-	-	-	A	3776721	G	A	3776721	2	1	550	1	0	0	0	0	0	0	0	1	2631	1024	36	4		4	CAMKK1	17	3776721	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1628761	3776721	77418489	714	48776										
ZFP3	0	genome.wustl.edu	37	chr17	4995656	4995656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ataccatgaatgcaatgagtGtggcaaagccttcaagcata	9	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	4995656	4995656	G	A	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	1	known	missense	c.857	p.C286Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	152	0	0	188	69	26.85	-	-	-	A	4995656	G	A	4995656	3	1	550	1	0	0	0	0	1	0	0	0	17739	1377	48	4	859	4	ZFP3	17	4995656	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1218935	4995656	76199554	715	48777										
NUP88	0	genome.wustl.edu	37	chr17	5322961	5322961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtcgcccaccggtccctcggCggccgccatcttggcccaac	11	20	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	5322961	5322961	C	T	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.10	p.A4T	0.531	NULL	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	20	0	0	13	18	52.94	-	-	-	T	5322961	C	T	5322961	3	4	550	1	0	0	0	0	1	0	0	0	10844	782	27	1	2283	1	NUP88	17	5322961	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	327305	5322961	75872249	716	48778										
SLC16A11	0	genome.wustl.edu	37	chr17	6945055	6945055	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggacagcaagactgcctgGggagcgggaagcagctcccc	17	12	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	6945055	6945055	G	A	SNP	SLC16A11	ENST00000308009	human	ensembl	69_37n	-1	known	silent	c.1359	p.P453	0.001	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326	17	0	0	14	4	22.22	-	-	-	A	6945055	G	A	6945055	2	1	550	1	0	0	0	0	0	0	0	1	14493	1219	43	4		4	SLC16A11	17	6945055	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1622094	6945055	74250155	717	48779										
POLR2A	0	genome.wustl.edu	37	chr17	7404381	7404381	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catgacatcactcgcctcttCtactccaacattcagactgt	4	15	4	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	7404381	7404381	C	T	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.2004	p.F668	1.000	pfam_RNA_pol_Rpb1_3	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	195	0	0	52	15	22.39	-	-	-	T	7404381	C	T	7404381	2	4	550	1	0	0	0	0	0	0	0	1	12288	912	32	2		2	POLR2A	17	7404381	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	459326	7404381	73790829	718	48780										
SAT2	0	genome.wustl.edu	37	chr17	7530314	7530314	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gataaatggtgcgtcccttcCatgtactgtagatgaaatag	10	7	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	7530314	7530314	C	T	SNP	SAT2	ENST00000269298	human	ensembl	69_37n	-1	known	nonsense	c.251	p.W84*	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SAT2	HGNC	ENSG00000141504	79	0	0	42	27	39.13	-	-	-	T	7530314	C	T	7530314	4	4	550	1	0	0	0	0	0	1	0	0	13939	595	21	4	273	4	SAT2	17	7530314	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	125933	7530314	73664896	719	48781										
WRAP53	0	genome.wustl.edu	37	chr17	7606399	7606399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcaatgatgggaagccggagCccgtgttgagttttctgccc	14	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	7606399	7606399	C	T	SNP	WRAP53	ENST00000316024	human	ensembl	69_37n	1	known	missense	c.1357	p.P453S	0.864	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	34	0	0	23	9	28.12	-	-	-	T	7606399	C	T	7606399	3	4	550	1	0	0	0	0	1	0	0	0	17497	739	26	4	1391	4	WRAP53	17	7606399	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	76085	7606399	73588811	720	48782										
PIK3R5	0	genome.wustl.edu	37	chr17	8792256	8792256	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggcgtctgggccccggatCcccttctatattccctttgg	11	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	8792256	8792256	C	T	SNP	PIK3R5	ENST00000578457	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PIK3R5	HGNC	ENSG00000141506	17	0	0	18	30	62.5	-	-	-	T	8792256	C	T	8792256	1	4	550	0	1	0	0	0	0	0	0	0	11996	870	30	2		2	PIK3R5	17	8792256	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1185857	8792256	72402954	721	48783										
MYH13	0	genome.wustl.edu	37	chr17	10227360	10227360	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttgttctctgtggcatgcttCtccttttcaactttcgtcaa	6	11	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	10227360	10227360	C	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	silent	c.2913	p.E971	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	127	0	0	85	12	12.24	-	-	-	T	10227360	C	T	10227360	2	4	550	1	0	0	0	0	0	0	0	1	10104	912	32	2		2	MYH13	17	10227360	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1435104	10227360	70967850	722	48784										
MYH1	0	genome.wustl.edu	37	chr17	10409238	10409238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgcaggacaagctcatgctCcatggcacctaaaagaatga	9	10	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	10409238	10409238	C	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.2065	p.E689K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	145	0	0	86	48	35.56	-	-	-	T	10409238	C	T	10409238	3	4	550	1	0	0	0	0	1	0	0	0	10101	864	30	2	3842	2	MYH1	17	10409238	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	181878	10409238	70785972	723	48785										
FAM18B2	0	genome.wustl.edu	37	chr17	15406191	15406191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gttgtttttaatgcattccgGatgccagatgaaattttggc	10	6	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	15406191	15406191	G	A	SNP	FAM18B2	ENST00000225576	human	ensembl	69_37n	-1	known	missense	c.818	p.S273F	1.000	NULL	pfam_DUF846_euk	-	no_errors	FAM18B2	HGNC	ENSG00000175106	50	0	0	40	7	14.89	-	-	-	A	15406191	G	A	15406191	3	1	550	1	0	0	0	0	1	0	0	0	5562	1174	41	2	16	2	FAM18B2	17	15406191	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4996953	15406191	65789019	724	48786										
CDRT1	0	genome.wustl.edu	37	chr17	15519016	15519016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggggctttggacaaaggaaGggatgtgtgctgagttttgg	18	3	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	15519016	15519016	G	A	SNP	CDRT1	ENST00000395906	human	ensembl	69_37n	-1	known	missense	c.613	p.L205F	0.298	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322	87	0	0	89	10	10.1	-	-	-	A	15519016	G	A	15519016	3	1	550	1	0	0	0	0	1	0	0	0	3203	1000	35	4	1689	4	CDRT1	17	15519016	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	112825	15519016	65676194	725	48787										
FLII	0	genome.wustl.edu	37	chr17	18155318	18155318	+	Missense_Mutation	SNP	G	G	C													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctttccccactcaccagctGcagctgcagccacggtagca							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	18155318	18155318	G	C	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.1241	p.A414G	0.996	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	19	0	0	8	25	75.76	-	-	-	C	18155318	G	C	18155318	3	2	550	1	0	0	0	0	1	0	0	0	5971	1319	46	4	2648	4	FLII	17	18155318	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2636302	18155318	63039892	726	48788	409	2								
FLII	0	genome.wustl.edu	37	chr17	18155319	18155319	+	Missense_Mutation	SNP	C	C	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctttccccactcaccagctgCagctgcagccacggtagcag							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	18155319	18155319	C	G	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.1240	p.A414P	0.996	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	20	0	0	8	22	73.33	-	-	-	G	18155319	C	G	18155319	3	3	550	1	0	0	0	0	1	0	0	0	5971	710	25	4	2649	4	FLII	17	18155319	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1	18155319	63039891	727	48789	409	2								
PRPSAP2	0	genome.wustl.edu	37	chr17	18832139	18832139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcaggatgacatcattgatGatgttgacagctttcttgct	11	7	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	18832139	18832139	G	A	SNP	PRPSAP2	ENST00000268835	human	ensembl	69_37n	1	known	missense	c.820	p.D274N	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127	139	0	0	153	30	16.39	-	-	-	A	18832139	G	A	18832139	3	1	550	1	0	0	0	0	1	0	0	0	12663	1290	45	2	854	2	PRPSAP2	17	18832139	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	676820	18832139	62363071	728	48790										
ALDH3A2	0	genome.wustl.edu	37	chr17	19559794	19559794	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggcaaaattgtcatggaagCtgctgccaagcatctgaccc	10	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	19559794	19559794	C	T	SNP	ALDH3A2	ENST00000339618	human	ensembl	69_37n	1	known	missense	c.587	p.A196V	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210	50	0	0	20	30	60	-	-	-	T	19559794	C	T	19559794	3	4	550	1	0	0	0	0	1	0	0	0	498	797	28	4	601	4	ALDH3A2	17	19559794	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	727655	19559794	61635416	729	48791										
USP22	0	genome.wustl.edu	37	chr17	20921316	20921316	+	Missense_Mutation	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggggctctgcatctcacagCggtgcctgtcagacaggaag							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	20921316	20921316	C	T	SNP	USP22	ENST00000261497	human	ensembl	69_37n	-1	known	missense	c.629	p.R210H	0.997	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP22	HGNC	ENSG00000124422	74	0	0	48	10	17.24	-	-	-	T	20921316	C	T	20921316	3	4	550	1	0	0	0	0	1	0	0	0	17151	768	27	1	984	1	USP22	17	20921316	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1361522	20921316	60273894	730	48792	410	2								
USP22	0	genome.wustl.edu	37	chr17	20921322	20921322	+	Missense_Mutation	SNP	C	C	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgcatctcacagcggtgcCtgtcagacaggaagaagtcc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	20921322	20921322	C	T	SNP	USP22	ENST00000261497	human	ensembl	69_37n	-1	known	missense	c.623	p.R208K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP22	HGNC	ENSG00000124422	78	0	0	46	10	17.54	-	-	-	T	20921322	C	T	20921322	3	4	550	1	0	0	0	0	1	0	0	0	17151	681	24	4	990	4	USP22	17	20921322	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6	20921322	60273888	731	48793	410	2								
VTN	0	genome.wustl.edu	37	chr17	26696627	26696627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgggggctgaggtctccctgGatgaagggtctcaggccttg	17	9	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	26696627	26696627	G	A	SNP	VTN	ENST00000226218	human	ensembl	69_37n	-1	known	missense	c.430	p.P144S	0.000	NULL	pfam_Hemopexin/matrixin_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000255604	29	0	0	31	4	11.43	-	-	-	A	26696627	G	A	26696627	3	1	550	1	0	0	0	0	1	0	0	0	17334	1174	41	2	1030	2	VTN	17	26696627	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5775305	26696627	54498583	732	48794										
SARM1	0	genome.wustl.edu	37	chr17	26711585	26711585	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccaagtactgcgagagcttCcgggtagagtcgcgtgggat	15	9	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	26711585	26711585	C	T	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	silent	c.1197	p.F399	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	11	0	0	40	13	24.53	-	-	-	T	26711585	C	T	26711585	2	4	550	1	0	0	0	0	0	0	0	1	13929	854	30	2		2	SARM1	17	26711585	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	14958	26711585	54483625	733	48795										
SPAG5	0	genome.wustl.edu	37	chr17	26919303	26919303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttctactgctgggcctggaGcttcttgggattccatttct	10	11	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	26919303	26919303	G	A	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.959	p.A320V	0.002	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	71	0	0	121	22	15.38	-	-	-	A	26919303	G	A	26919303	3	1	550	1	0	0	0	0	1	0	0	0	15072	971	34	4	2710	4	SPAG5	17	26919303	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	207718	26919303	54275907	734	48796										
NEK8	0	genome.wustl.edu	37	chr17	27068533	27068533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagttggatgagacacaccCttacacggtgacttccgtgt	11	11	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	27068533	27068533	C	T	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.1994	p.P665L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	42	0	0	34	5	12.82	-	-	-	T	27068533	C	T	27068533	3	4	550	1	0	0	0	0	1	0	0	0	10402	681	24	4	2048	4	NEK8	17	27068533	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	149230	27068533	54126677	735	48797										
C17orf75	0	genome.wustl.edu	37	chr17	30665312	30665312	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtctatcgttactgtttcagGaagcagtttttcattttgga	9	6	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	30665312	30665312	G	A	SNP	C17orf75	ENST00000225805	human	ensembl	69_37n	-1	known	missense	c.406	p.P136S	0.868	NULL	NULL	-	no_errors	C17orf75	HGNC	ENSG00000108666	142	0	0	229	201	46.74	-	-	-	A	30665312	G	A	30665312	3	1	550	1	0	0	0	0	1	0	0	0	1896	1174	41	2	812	2	C17orf75	17	30665312	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3596779	30665312	50529898	736	48798										
GGNBP2	0	genome.wustl.edu	37	chr17	34941765	34941765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaaatagcagctgcaaagcCtgtggcagcactgaagatgg	13	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	34941765	34941765	C	T	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	1	known	silent	c.1251	p.A417	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	110	0	0	121	18	12.95	-	-	-	T	34941765	C	T	34941765	2	4	550	1	0	0	0	0	0	0	0	1	6411	668	24	4		4	GGNBP2	17	34941765	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4276453	34941765	46253445	737	48799										
ACACA	0	genome.wustl.edu	37	chr17	35615233	35615233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcaatgggagaatcaccccaGggagataccccatacatcat	8	12	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	35615233	35615233	G	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	silent	c.1563	p.P521	1.000	pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	181	0	0	93	25	21.19	-	-	-	A	35615233	G	A	35615233	2	1	550	1	0	0	0	0	0	0	0	1	106	987	35	4		4	ACACA	17	35615233	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	673468	35615233	45579977	738	48800										
ERBB2	0	genome.wustl.edu	37	chr17	37871757	37871757	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctcagcgtcttccagaaCctgcaagtaatccggggacg	11	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	37871757	37871757	C	A	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.1281	p.N427K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	71	0	0	86	11	11.34	-	-	-	A	37871757	C	A	37871757	3	1	550	1	0	0	0	0	1	0	0	0	5243	506	18	4	1323	4	ERBB2	17	37871757	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2256524	37871757	43323453	739	48801										
TNS4	0	genome.wustl.edu	37	chr17	38645098	38645098	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgtctctcgggggacgtctCtggaaaggaggaggccacca	16	10	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	38645098	38645098	C	T	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.563	p.R188K	1.000	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	35	0	0	37	14	27.45	-	-	-	T	38645098	C	T	38645098	3	4	550	1	0	0	0	0	1	0	0	0	16440	913	32	2	1628	2	TNS4	17	38645098	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	773341	38645098	42550112	740	48802										
SMARCE1	0	genome.wustl.edu	37	chr17	38788511	38788511	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctagctgttgtgacaactGaccgaacgtctggcaccaca	9	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	38788511	38788511	G	A	SNP	SMARCE1	ENST00000348513	human	ensembl	69_37n	-1	known	missense	c.650	p.S217L	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SMARCE1	HGNC	ENSG00000073584	210	0	0	198	64	24.33	-	-	-	A	38788511	G	A	38788511	3	1	550	1	0	0	0	0	1	0	0	0	14869	1294	45	2	601	2	SMARCE1	17	38788511	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	143413	38788511	42406699	741	48803										
KRT36	0	genome.wustl.edu	37	chr17	39645881	39645881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgcagaaccagcccccgctcCccacaaagccagaggtgtgg	11	17	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	39645881	39645881	C	T	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	missense	c.236	p.G79E	0.929	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	86	0	0	57	12	17.39	-	-	-	T	39645881	C	T	39645881	3	4	550	1	0	0	0	0	1	0	0	0	8526	623	22	4	1195	4	KRT36	17	39645881	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	857370	39645881	41549329	742	48804										
NKIRAS2	0	genome.wustl.edu	37	chr17	40173636	40173636	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtcgtgtgtggccaggcgtCtgtgggcaaaacttcaatcc	14	10	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	40173636	40173636	C	T	SNP	NKIRAS2	ENST00000307641	human	ensembl	69_37n	1	known	missense	c.41	p.S14F	0.774	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS2	HGNC	ENSG00000168256	100	0	0	90	23	20.35	-	-	-	T	40173636	C	T	40173636	3	4	550	1	0	0	0	0	1	0	0	0	10517	913	32	2	43	2	NKIRAS2	17	40173636	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	527755	40173636	41021574	743	48805										
AOC2	0	genome.wustl.edu	37	chr17	40996919	40996919	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagccctcggacaactgcatCttctcagtggagctgcagct	10	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	40996919	40996919	C	T	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	silent	c.276	p.I92	0.996	pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	102	0	0	46	6	11.54	-	-	-	T	40996919	C	T	40996919	2	4	550	1	0	0	0	0	0	0	0	1	728	903	32	2		2	AOC2	17	40996919	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	823283	40996919	40198291	744	48806										
MPP3	0	genome.wustl.edu	37	chr17	41908940	41908940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acttcaccttcattaagtaaCtgaggcttttttcactgaaa	5	9	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	41908940	41908940	C	T	SNP	MPP3	ENST00000398389	human	ensembl	69_37n	-1	known	missense	c.131	p.S44N	1.000	pfam_L27_C,smart_L27,pfscan_L27	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP3	HGNC	ENSG00000161647	87	0	0	36	35	48.61	-	-	-	T	41908940	C	T	41908940	3	4	550	1	0	0	0	0	1	0	0	0	9807	565	20	4	1694	4	MPP3	17	41908940	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	912021	41908940	39286270	745	48807										
FZD2	0	genome.wustl.edu	37	chr17	42635924	42635924	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtcgggctgctacaccatgGtgtcggtggcctacatcgcg	14	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	42635924	42635924	G	A	SNP	FZD2	ENST00000315323	human	ensembl	69_37n	1	known	missense	c.868	p.V290M	1.000	pfam_Frizzled,prints_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD2	HGNC	ENSG00000180340	33	0	0	30	8	21.05	-	-	-	A	42635924	G	A	42635924	3	1	550	1	0	0	0	0	1	0	0	0	6179	1261	44	4	870	4	FZD2	17	42635924	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	726984	42635924	38559286	746	48808										
LRRC46	0	genome.wustl.edu	37	chr17	45914450	45914450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tctgtggctgaggcccccagCacaaccaaaactacggccaa	9	15	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	45914450	45914450	C	T	SNP	LRRC46	ENST00000269025	human	ensembl	69_37n	1	known	silent	c.930	p.S310	0.007	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC46	HGNC	ENSG00000141294	69	0	0	25	24	48.98	-	-	-	T	45914450	C	T	45914450	2	4	550	1	0	0	0	0	0	0	0	1	9069	709	25	4		4	LRRC46	17	45914450	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3278526	45914450	35280760	747	48809										
SCRN2	0	genome.wustl.edu	37	chr17	45917717	45917717	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcgtgcgtcttcgacacctGttccacttcaatgtaggtgc	10	12	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	45917717	45917717	G	A	SNP	SCRN2	ENST00000290216	human	ensembl	69_37n	-1	known	nonsense	c.196	p.Q66*	1.000	pfam_Pept_C45_AAT	pfam_Peptidase_C69,pfam_Pept_C45_AAT	-	no_errors	SCRN2	HGNC	ENSG00000141295	25	0	0	27	7	20	-	-	-	A	45917717	G	A	45917717	4	1	550	1	0	0	0	0	0	1	0	0	14027	1386	48	4	1123	4	SCRN2	17	45917717	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3267	45917717	35277493	748	48810										
NFE2L1	0	genome.wustl.edu	37	chr17	46136064	46136064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctggccattgaagaaggCtttaaccctgtgcaggcctc	11	12	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	46136064	46136064	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	silent	c.1380	p.G460	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	233	0	0	102	26	20.16	-	-	-	T	46136064	C	T	46136064	2	4	550	1	0	0	0	0	0	0	0	1	10439	784	28	4		4	NFE2L1	17	46136064	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	218347	46136064	35059146	749	48811										
SAMD14	0	genome.wustl.edu	37	chr17	48193254	48193254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggctcttgcccgtggatgctCggcgcagggtgaccctgtgg	17	12	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	48193254	48193254	C	T	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.602	p.R201Q	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	21	0	0	14	36	72	-	-	-	T	48193254	C	T	48193254	3	4	550	1	0	0	0	0	1	0	0	0	13905	884	31	1	759	1	SAMD14	17	48193254	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2057190	48193254	33001956	750	48812										
HEATR6	0	genome.wustl.edu	37	chr17	58128214	58128214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcacattaccggcagattgCtgaaggcctctggcaagatg	11	11	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	58128214	58128214	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	69_37n	-1	known	missense	c.2414	p.S805N	0.913	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097	59	0	0	54	7	11.48	-	-	-	T	58128214	C	T	58128214	3	4	550	1	0	0	0	0	1	0	0	0	7084	797	28	4	1155	4	HEATR6	17	58128214	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	9934960	58128214	23066996	751	48813										
GPR142	0	genome.wustl.edu	37	chr17	72363783	72363783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccatgcacagaaaagccagCattcttgtctcagccattcc	6	15	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	72363783	72363783	C	T	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	missense	c.139	p.H47Y	0.999	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	45	0	0	48	6	11.11	-	-	-	T	72363783	C	T	72363783	3	4	550	1	0	0	0	0	1	0	0	0	6700	710	25	4	141	4	GPR142	17	72363783	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	14235569	72363783	8831427	752	48814										
CD300C	0	genome.wustl.edu	37	chr17	72540849	72540849	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcctgcgtcctcctctgtgAgattctccagggtcactgtg	11	13	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	72540849	72540849	A	G	SNP	CD300C	ENST00000330793	human	ensembl	69_37n	-1	known	missense	c.299	p.L100P	0.075	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300C	HGNC	ENSG00000167850	111	0	0	61	10	14.08	-	-	-	G	72540849	A	G	72540849	3	3	550	1	0	0	0	0	1	0	0	0	3026	304	11	5	387	5	CD300C	17	72540849	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	177066	72540849	8654361	753	48815										
NUP85	0	genome.wustl.edu	37	chr17	73222115	73222115	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgagtctctgcttccgtcctCaggattgagtgtctcatcac	9	13	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	73222115	73222115	C	T	SNP	NUP85	ENST00000583948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP85	HGNC	ENSG00000125450	90	0	0	113	19	14.39	-	-	-	T	73222115	C	T	73222115	1	4	550	0	1	0	0	0	0	0	0	0	10843	841	29	2		2	NUP85	17	73222115	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	681266	73222115	7973095	754	48816										
ITGB4	0	genome.wustl.edu	37	chr17	73727382	73727382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cagcccccgaggccttcggaCagaggtcacctccaagatgt	11	15	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	73727382	73727382	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.1148	p.T383I	0.976	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	18	0	0	3	4	57.14	-	-	-	T	73727382	C	T	73727382	3	4	550	1	0	0	0	0	1	0	0	0	7951	478	17	4	1182	4	ITGB4	17	73727382	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	505267	73727382	7467828	755	48817										
CBX2	0	genome.wustl.edu	37	chr17	77758104	77758104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccaacaagtgcggcctcgggCtggacctgaaggtgaggacg	16	11	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	77758104	77758104	C	T	SNP	CBX2	ENST00000310942	human	ensembl	69_37n	1	known	silent	c.862	p.L288	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	19	0	0	7	6	42.86	-	-	-	T	77758104	C	T	77758104	2	4	550	1	0	0	0	0	0	0	0	1	2743	796	28	4		4	CBX2	17	77758104	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4030722	77758104	3437106	756	48818										
RNF213	0	genome.wustl.edu	37	chr17	78350117	78350117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcagcaatgtgaagctgtgaGcaaattcattggcgaatgca	11	7	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	78350117	78350117	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.13202	p.S4401N	0.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	107	0	0	57	9	13.64	-	-	-	A	78350117	G	A	78350117	3	1	550	1	0	0	0	0	1	0	0	0	13563	971	34	4	13723	4	RNF213	17	78350117	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	592013	78350117	2845093	757	48819										
NPLOC4	0	genome.wustl.edu	37	chr17	79556051	79556051	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggcgtccttgcatggcagCaaacactcatcacggaccag	12	13	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	17	79556051	79556051	C	T	SNP	NPLOC4	ENST00000374747	human	ensembl	69_37n	-1	known	silent	c.1200	p.L400	0.996	pfam_NPL4,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446	108	0	0	102	31	23.31	-	-	-	T	79556051	C	T	79556051	2	4	550	1	0	0	0	0	0	0	0	1	10659	709	25	4		4	NPLOC4	17	79556051	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1205934	79556051	1639159	758	48820										
ANKRD12	0	genome.wustl.edu	37	chr18	9258186	9258186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaacaaactggagagtttgGttttaactcatttgagtagg	10	4	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	9258186	9258186	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.4921	p.V1641I	0.949	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	199	0	0	153	21	12.07	-	-	-	A	9258186	G	A	9258186	3	1	550	1	0	0	0	0	1	0	0	0	640	1261	44	4	4951	4	ANKRD12	18	9258186	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		9258186	68819062	759	48821										
NAPG	0	genome.wustl.edu	37	chr18	10546341	10546341	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggtttgatgaggcggcactCtctattcagaaagaaaaaaa	10	6	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	10546341	10546341	C	T	SNP	NAPG	ENST00000322897	human	ensembl	69_37n	1	known	silent	c.525	p.L175	0.029	NULL	NULL	-	no_errors	NAPG	HGNC	ENSG00000134265	57	0	0	28	6	17.65	-	-	-	T	10546341	C	T	10546341	2	4	550	1	0	0	0	0	0	0	0	1	10236	900	32	2		2	NAPG	18	10546341	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1288155	10546341	67530907	760	48822										
MPPE1	0	genome.wustl.edu	37	chr18	11884558	11884558	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cccaccactccacagtagatGatcaaaaccacatcctcacg	4	17	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	11884558	11884558	G	A	SNP	MPPE1	ENST00000588072	human	ensembl	69_37n	-1	known	silent	c.1077	p.I359	0.010	NULL	pfam_Metallo_PEstase_dom	-	no_errors	MPPE1	HGNC	ENSG00000154889	65	0	0	48	6	11.11	-	-	-	A	11884558	G	A	11884558	2	1	550	1	0	0	0	0	0	0	0	1	9812	1280	45	2		2	MPPE1	18	11884558	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1338217	11884558	66192690	761	48823										
TAF4B	0	genome.wustl.edu	37	chr18	23854787	23854787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgttcagattaatctttctcCggtaagctcttacttgcacc	6	11	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	23854787	23854787	C	T	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	missense	c.758	p.P253L	0.995	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	336	0	0	314	91	22.47	-	-	-	T	23854787	C	T	23854787	3	4	550	1	0	0	0	0	1	0	0	0	15619	666	23	1	772	1	TAF4B	18	23854787	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	11970229	23854787	54222461	762	48824										
DSG4	0	genome.wustl.edu	37	chr18	28986048	28986048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttccatttcagctacctcgGcaatccttacggctaagcag	7	14	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	28986048	28986048	G	A	SNP	DSG4	ENST00000359747	human	ensembl	69_37n	1	known	missense	c.1645	p.A549T	0.892	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065	114	0	0	89	15	14.42	-	-	-	A	28986048	G	A	28986048	3	1	550	1	0	0	0	0	1	0	0	0	4814	1203	42	4	1691	4	DSG4	18	28986048	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5131261	28986048	49091200	763	48825										
TCEB3B	0	genome.wustl.edu	37	chr18	44560096	44560096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggcctggagcccgagtacaCcggcatcttagcattcactc	10	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	44560096	44560096	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.1540	p.V514M	0.025	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	117	0	0	107	12	10.08	-	-	-	T	44560096	C	T	44560096	3	4	550	1	0	0	0	0	1	0	0	0	15777	507	18	4	725	4	TCEB3B	18	44560096	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	15574048	44560096	33517152	764	48826										
TCEB3B	0	genome.wustl.edu	37	chr18	44560634	44560634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaagctgctctttctcctcGggcgacaggccgtgtgtccc	12	14	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	44560634	44560634	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	silent	c.1002	p.P334	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	79	0	0	69	52	42.98	-	-	-	A	44560634	G	A	44560634	2	1	550	1	0	0	0	0	0	0	0	1	15777	1103	39	1		1	TCEB3B	18	44560634	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	538	44560634	33516614	765	48827										
KATNAL2	0	genome.wustl.edu	37	chr18	44601736	44601736	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagtcagagaggcacagcttCtgggtaacagacagggttgg	16	7	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	18	44601736	44601736	C	T	SNP	KATNAL2	ENST00000245121	human	ensembl	69_37n	1	known	missense	c.881	p.S294F	0.992	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216	86	0	0	34	49	59.04	-	-	-	T	44601736	C	T	44601736	3	4	550	1	0	0	0	0	1	0	0	0	8040	913	32	2	919	2	KATNAL2	18	44601736	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	41102	44601736	33475512	766	48828										
SLC39A3	0	genome.wustl.edu	37	chr19	2737120	2737120	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctccaaaggtgttgcagaGagagaggatctttttcgagc	12	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	2737120	2737120	G	A	SNP	SLC39A3	ENST00000269740	human	ensembl	69_37n	-1	known	missense	c.136	p.L46F	0.994	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873	22	0	0	36	25	40.98	-	-	-	A	2737120	G	A	2737120	3	1	550	1	0	0	0	0	1	0	0	0	14708	942	33	2	924	2	SLC39A3	19	2737120	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		2737120	56391863	767	48829										
ZNF556	0	genome.wustl.edu	37	chr19	2873608	2873608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgctggagaccttcaagcacCtggcctcagtaggtgaggat	13	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	2873608	2873608	C	T	SNP	ZNF556	ENST00000307635	human	ensembl	69_37n	1	known	silent	c.118	p.L40	0.034	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000	84	0	0	83	76	47.8	-	-	-	T	2873608	C	T	2873608	2	4	550	1	0	0	0	0	0	0	0	1	18083	680	24	4		4	ZNF556	19	2873608	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	136488	2873608	56255375	768	48830										
CREB3L3	0	genome.wustl.edu	37	chr19	4170160	4170160	+	Missense_Mutation	SNP	A	A	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtcagcttgcactgctcagaAtcaggagttacagaggaaag							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	4170160	4170160	A	G	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.845	p.N282S	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	63	0	0	32	15	31.91	-	-	-	G	4170160	A	G	4170160	3	3	550	1	0	0	0	0	1	0	0	0	3888	101	4	5	871	5	CREB3L3	19	4170160	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1296552	4170160	54958823	769	48831	411	2								
CREB3L3	0	genome.wustl.edu	37	chr19	4170161	4170161	+	Missense_Mutation	SNP	T	T	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcagcttgcactgctcagaaTcaggagttacagaggaaagt							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	4170161	4170161	T	G	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.846	p.N282K	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	63	0	0	32	18	36	-	-	-	G	4170161	T	G	4170161	3	3	550	1	0	0	0	0	1	0	0	0	3888	1432	50	5	872	5	CREB3L3	19	4170161	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1	4170161	54958822	770	48832	411	2								
ARRDC5	0	genome.wustl.edu	37	chr19	4902706	4902706	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgacgtaaccccttcccacGagctccaccttcactatggg	7	17	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	4902706	4902706	G	A	SNP	ARRDC5	ENST00000381781	human	ensembl	69_37n	-1	known	silent	c.174	p.L58	0.784	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784	140	1	0.7	119	21	15	-	-	-	A	4902706	G	A	4902706	2	1	550	1	0	0	0	0	0	0	0	1	990	1045	37	1		1	ARRDC5	19	4902706	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	732545	4902706	54226277	771	48833										
VAV1	0	genome.wustl.edu	37	chr19	6833624	6833624	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggagggtccctccatgtggcCgacatgggcaaggtacgagt	16	10	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	6833624	6833624	C	T	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	nonsense	c.1696	p.R566*	0.677	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	127	0	0	91	16	14.95	-	-	-	T	6833624	C	T	6833624	4	4	550	1	0	0	0	0	0	1	0	0	17228	644	23	1	1762	1	VAV1	19	6833624	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1930918	6833624	52295359	772	48834										
EMR1	0	genome.wustl.edu	37	chr19	6937656	6937656	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccatgccatccgcttccaaGacggtgagagactgcatgct	10	13	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	6937656	6937656	G	A	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	silent	c.2652	p.K884	0.699	prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	74	0	0	41	5	10.87	-	-	-	A	6937656	G	A	6937656	2	1	550	1	0	0	0	0	0	0	0	1	5141	933	33	2		2	EMR1	19	6937656	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	104032	6937656	52191327	773	48835										
CCDC151	0	genome.wustl.edu	37	chr19	11532428	11532428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tttcagcagcttttcctccaCgaggcccagcaggtttggca	10	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	11532428	11532428	C	T	SNP	CCDC151	ENST00000356392	human	ensembl	69_37n	-1	known	missense	c.1507	p.V503M	0.722	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003	16	0	0	6	8	57.14	-	-	-	T	11532428	C	T	11532428	3	4	550	1	0	0	0	0	1	0	0	0	2811	536	19	1	292	1	CCDC151	19	11532428	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4594772	11532428	47596555	774	48836										
ZNF69	0	genome.wustl.edu	37	chr19	12015501	12015501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aagtcaatgaaattaaagatGacagtcattgtggagaaact	9	4	2	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	12015501	12015501	G	A	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	1	known	missense	c.289	p.D97N	0.002	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	347	0	0	844	281	24.98	-	-	-	A	12015501	G	A	12015501	3	1	550	1	0	0	0	0	1	0	0	0	18191	1290	45	2	261	2	ZNF69	19	12015501	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	483073	12015501	47113482	775	48837										
MAST1	0	genome.wustl.edu	37	chr19	12981647	12981647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcttttcccagcatgtggagGaaggaggcccagcccaggag	14	11	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	12981647	12981647	G	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.3013	p.E1005K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	82	0	0	58	48	45.28	-	-	-	A	12981647	G	A	12981647	3	1	550	1	0	0	0	0	1	0	0	0	9395	1175	41	2	3103	2	MAST1	19	12981647	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	966146	12981647	46147336	776	48838										
PRKACA	0	genome.wustl.edu	37	chr19	14208282	14208282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccagggcccaccagtccacgGccttgttgtagccctggagc	12	16	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	14208282	14208282	G	A	SNP	PRKACA	ENST00000308677	human	ensembl	69_37n	-1	known	missense	c.656	p.A219V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	31	0	0	23	12	32.43	-	-	-	A	14208282	G	A	14208282	3	1	550	1	0	0	0	0	1	0	0	0	12578	1203	42	4	411	4	PRKACA	19	14208282	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1226635	14208282	44920701	777	48839										
CD97	0	genome.wustl.edu	37	chr19	14507238	14507238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggcagctatacctgccagtGcctgcctggcttcaagttca	10	13	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	14507238	14507238	G	A	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	missense	c.431	p.C144Y	0.075	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	57	0	0	36	25	40.32	-	-	-	A	14507238	G	A	14507238	3	1	550	1	0	0	0	0	1	0	0	0	3078	1319	46	4	449	4	CD97	19	14507238	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	298956	14507238	44621745	778	48840										
ZNF333	0	genome.wustl.edu	37	chr19	14827050	14827050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acaggaacctggcctctgtgGgtaaggcagcttcatctttt	11	10	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	14827050	14827050	G	A	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	missense	c.727	p.A243T	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	328	0	0	309	316	50.56	-	-	-	A	14827050	G	A	14827050	3	1	550	1	0	0	0	0	1	0	0	0	17946	1246	43	4	757	4	ZNF333	19	14827050	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	319812	14827050	44301933	779	48841										
CYP4F22	0	genome.wustl.edu	37	chr19	15655008	15655008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttggatgctgttcaatttgGcaaagtatccggaataccag	10	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	15655008	15655008	G	A	SNP	CYP4F22	ENST00000269703	human	ensembl	69_37n	1	known	missense	c.1054	p.A352T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954	107	0	0	131	21	13.82	-	-	-	A	15655008	G	A	15655008	3	1	550	1	0	0	0	0	1	0	0	0	4220	1203	42	4	1084	4	CYP4F22	19	15655008	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	827958	15655008	43473975	780	48842										
HAUS8	0	genome.wustl.edu	37	chr19	17169673	17169673	+	Frame_Shift_Del	DEL	G	G	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagactccatcatttccattGcttcagataaatccttaaga							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	17169673	17169673	G	-	DEL	HAUS8	ENST00000253669	human	ensembl	69_37n	-1	known	frame_shift_del	c.434	p.A145fs	0.000	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351	103	0	0	60	8	11.76	-	-	-	-	17169673	G	-	17169673	7	5	550	1	0	1	0	1	0	0	0	0	7023	1319	46	0	818	0	HAUS8	19	17169673	Frame_Shift_Del	DEL	G	TCGA-BH-A0HF-01A-11W-A071-09	1514665	17169673	41959310	781	48843										
SLC27A1	0	genome.wustl.edu	37	chr19	17611304	17611304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaacatggccttctccctagGggagcctggcctccttgtgg	13	13	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	17611304	17611304	G	A	SNP	SLC27A1	ENST00000252595	human	ensembl	69_37n	1	known	missense	c.1334	p.G445E	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304	29	0	0	27	58	68.24	-	-	-	A	17611304	G	A	17611304	3	1	550	1	0	0	0	0	1	0	0	0	14614	1246	43	4	1368	4	SLC27A1	19	17611304	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	441631	17611304	41517679	782	48844										
FCHO1	0	genome.wustl.edu	37	chr19	17895618	17895618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccctcacccaggtctcagtgGagtacggctaccggcccggt	12	16	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	17895618	17895618	G	A	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	missense	c.2311	p.E771K	1.000	superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	73	0	0	44	268	85.9	-	-	-	A	17895618	G	A	17895618	3	1	550	1	0	0	0	0	1	0	0	0	5833	1175	41	2	2401	2	FCHO1	19	17895618	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	284314	17895618	41233365	783	48845										
SLC5A5	0	genome.wustl.edu	37	chr19	17992986	17992986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacggatcggcctgtctcacCgtggcagccctgtcctcact	10	16	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	17992986	17992986	C	T	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	silent	c.1200	p.T400	0.004	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	46	0	0	33	4	10.81	-	-	-	T	17992986	C	T	17992986	2	4	550	1	0	0	0	0	0	0	0	1	14757	639	23	1		1	SLC5A5	19	17992986	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	97368	17992986	41135997	784	48846										
ZNF101	0	genome.wustl.edu	37	chr19	19790986	19790986	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggagaaaaaccctttgattgTaaacagtgtggtaaagtctt	10	5	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	19790986	19790986	T	A	SNP	ZNF101	ENST00000318110	human	ensembl	69_37n	1	known	nonsense	c.1188	p.C396*	0.034	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896	81	0	0	125	15	10.71	-	-	-	A	19790986	T	A	19790986	4	1	550	1	0	0	0	0	0	1	0	0	17810	1644	57	5	1202	5	ZNF101	19	19790986	Nonsense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	1798000	19790986	39337997	785	48847										
C19orf12	0	genome.wustl.edu	37	chr19	30193648	30193648	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atactggatctcggcccgcaGctccttggtgacgtagttca	11	12	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	30193648	30193648	G	A	SNP	C19orf12	ENST00000392278	human	ensembl	69_37n	-1	known	silent	c.430	p.L144	1.000	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943	25	0	0	36	7	16.28	-	-	-	A	30193648	G	A	30193648	2	1	550	1	0	0	0	0	0	0	0	1	1927	962	34	4		4	C19orf12	19	30193648	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	10402662	30193648	28935335	786	48848										
SLC7A9	0	genome.wustl.edu	37	chr19	33359415	33359415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgacttctcatcctctctcCgctttctcaggccagtatcc	5	17	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	33359415	33359415	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	missense	c.26	p.R9Q	0.747	NULL	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	44	0	0	25	8	24.24	-	-	-	T	33359415	C	T	33359415	3	4	550	1	0	0	0	0	1	0	0	0	14794	652	23	1	1485	1	SLC7A9	19	33359415	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3165767	33359415	25769568	787	48849										
ZNF181	0	genome.wustl.edu	37	chr19	35232357	35232357	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtcgtatatgtggaaaggcCttcattcataggtcatctct	9	8	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	35232357	35232357	C	T	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	silent	c.1071	p.A357	0.835	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	104	0	0	141	20	12.35	-	-	-	T	35232357	C	T	35232357	2	4	550	1	0	0	0	0	0	0	0	1	17845	668	24	4		4	ZNF181	19	35232357	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1872942	35232357	23896626	788	48850										
ZNF599	0	genome.wustl.edu	37	chr19	35250487	35250487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgtcggatgaaagtggagcGatgagtaaaggcctttccac	13	7	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	35250487	35250487	G	A	SNP	ZNF599	ENST00000329285	human	ensembl	69_37n	-1	known	missense	c.1219	p.R407C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896	119	0	0	143	26	15.38	-	-	-	A	35250487	G	A	35250487	3	1	550	1	0	0	0	0	1	0	0	0	18125	1058	37	1	551	1	ZNF599	19	35250487	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	18130	35250487	23878496	789	48851										
CD22	0	genome.wustl.edu	37	chr19	35823757	35823757	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccggtgcacctcaatgacagTggtcagctggggctgaggat	15	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	35823757	35823757	T	G	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	missense	c.342	p.S114R	0.630	smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	99	0	0	72	44	37.93	-	-	-	G	35823757	T	G	35823757	3	3	550	1	0	0	0	0	1	0	0	0	3014	1693	59	5	348	5	CD22	19	35823757	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	573270	35823757	23305226	790	48852										
WDR62	0	genome.wustl.edu	37	chr19	36577707	36577707	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcctccatcaccgccatcaaGttcgctggtgagcccctttc	7	17	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	36577707	36577707	G	A	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	silent	c.1761	p.K587	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	26	0	0	35	13	27.08	-	-	-	A	36577707	G	A	36577707	2	1	550	1	0	0	0	0	0	0	0	1	17410	1020	36	4		4	WDR62	19	36577707	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	753950	36577707	22551276	791	48853										
WDR62	0	genome.wustl.edu	37	chr19	36590458	36590458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacccccatgaagcccgagaGtctggagaactccattctgg	10	13	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	36590458	36590458	G	A	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.2678	p.S893N	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	78	0	0	72	11	13.25	-	-	-	A	36590458	G	A	36590458	3	1	550	1	0	0	0	0	1	0	0	0	17410	1029	36	4	2764	4	WDR62	19	36590458	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	12751	36590458	22538525	792	48854										
ZNF146	0	genome.wustl.edu	37	chr19	36727665	36727665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgtaaagattgcgggaaagCtttcattcagaagtcaaacc	10	7	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	36727665	36727665	C	T	SNP	ZNF146	ENST00000443387	human	ensembl	69_37n	1	known	missense	c.323	p.A108V	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF146	HGNC	ENSG00000167635	105	0	0	158	19	10.67	-	-	-	T	36727665	C	T	36727665	3	4	550	1	0	0	0	0	1	0	0	0	17829	797	28	4	325	4	ZNF146	19	36727665	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	137207	36727665	22401318	793	48855										
SIPA1L3	0	genome.wustl.edu	37	chr19	38610238	38610238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aaaagacaaaagcacgggctGgcgctgagcagcacagtgca	13	10	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	38610238	38610238	G	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.2584	p.G862C	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	52	0	0	73	34	31.78	-	-	-	T	38610238	G	T	38610238	3	4	550	1	0	0	0	0	1	0	0	0	14420	1348	47	4	2610	4	SIPA1L3	19	38610238	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1882573	38610238	20518745	794	48856										
C19orf47	0	genome.wustl.edu	37	chr19	40832364	40832364	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgcttggcaggaacagccaGgctctcctcctcccggcggg	13	17	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	40832364	40832364	G	A	SNP	C19orf47	ENST00000582783	human	ensembl	69_37n	-1	known	silent	c.580	p.L194	0.422	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392	27	0	0	48	18	27.27	-	-	-	A	40832364	G	A	40832364	2	1	550	1	0	0	0	0	0	0	0	1	1948	991	35	4		4	C19orf47	19	40832364	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2222126	40832364	18296619	795	48857										
SPTBN4	0	genome.wustl.edu	37	chr19	41063118	41063118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggagctcatgggcacacggGcccagctgctggccgcctct	14	15	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	41063118	41063118	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.5479	p.A1827T	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	30	0	0	47	70	59.32	-	-	-	A	41063118	G	A	41063118	3	1	550	1	0	0	0	0	1	0	0	0	15212	1203	42	4	5577	4	SPTBN4	19	41063118	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	230754	41063118	18065865	796	48858										
FOSB	0	genome.wustl.edu	37	chr19	45974093	45974093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccacaccaggcatgagtggCtacagcagtggcggagcgag	15	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	45974093	45974093	C	T	SNP	FOSB	ENST00000353609	human	ensembl	69_37n	1	known	silent	c.333	p.G111	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740	82	0	0	47	11	18.97	-	-	-	T	45974093	C	T	45974093	2	4	550	1	0	0	0	0	0	0	0	1	6032	784	28	4		4	FOSB	19	45974093	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4910975	45974093	13154890	797	48859										
RTN2	0	genome.wustl.edu	37	chr19	45997589	45997589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcgggatggggacggagtacCggcctggggtgtcccagagc	19	10	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	45997589	45997589	C	T	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	missense	c.649	p.G217S	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	48	0	0	28	32	53.33	-	-	-	T	45997589	C	T	45997589	3	4	550	1	0	0	0	0	1	0	0	0	13812	652	23	1	1020	1	RTN2	19	45997589	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	23496	45997589	13131394	798	48860										
SNRPD2	0	genome.wustl.edu	37	chr19	46190964	46190964	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtccacatctccttcacgttCtccagcaccatgttgcagtg	7	15	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	46190964	46190964	C	T	SNP	SNRPD2	ENST00000590212	human	ensembl	69_37n	-1	putative	missense	c.230	p.R77K	1.000	NULL	superfamily_LSM_dom	-	no_errors	SNRPD2	HGNC	ENSG00000125743	106	0	0	51	47	47.96	-	-	-	T	46190964	C	T	46190964	3	4	550	1	0	0	0	0	1	0	0	0	14954	912	32	2	156	2	SNRPD2	19	46190964	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	193375	46190964	12938019	799	48861										
TRPM4	0	genome.wustl.edu	37	chr19	49674905	49674905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcagggggagctgcggactGcctggcggagaccctggaag	18	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	49674905	49674905	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	missense	c.929	p.C310Y	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	47	0	0	57	43	43	-	-	-	A	49674905	G	A	49674905	3	1	550	1	0	0	0	0	1	0	0	0	16684	1319	46	4	959	4	TRPM4	19	49674905	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3483941	49674905	9454078	800	48862										
SCAF1	0	genome.wustl.edu	37	chr19	50148658	50148658	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccctgcagggggacctgccCaatgataaaggtatggcggc	14	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	50148658	50148658	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	silent	c.156	p.P52	0.310	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	95	0	0	47	6	11.32	-	-	-	T	50148658	C	T	50148658	2	4	550	1	0	0	0	0	0	0	0	1	13955	581	21	4		4	SCAF1	19	50148658	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	473753	50148658	8980325	801	48863										
TSKS	0	genome.wustl.edu	37	chr19	50251366	50251366	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agttgaatgcagtacccctcCaactcttctgcctcttgccg	7	15	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	50251366	50251366	C	A	SNP	TSKS	ENST00000246801	human	ensembl	69_37n	-1	known	missense	c.555	p.L185F	0.996	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467	92	0	0	46	18	28.12	-	-	-	A	50251366	C	A	50251366	3	1	550	1	0	0	0	0	1	0	0	0	16722	593	21	4	1255	4	TSKS	19	50251366	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	102708	50251366	8877617	802	48864										
MYADM	0	genome.wustl.edu	37	chr19	54377667	54377667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcctgggaccgccgactggCtgtggccatcctgacggcca	14	15	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	54377667	54377667	C	T	SNP	MYADM	ENST00000336967	human	ensembl	69_37n	1	known	missense	c.884	p.A295V	0.955	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	MYADM	HGNC	ENSG00000179820	89	0	0	109	15	12.1	-	-	-	T	54377667	C	T	54377667	3	4	550	1	0	0	0	0	1	0	0	0	10078	797	28	4	886	4	MYADM	19	54377667	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	4126301	54377667	4751316	803	48865										
LILRA3	0	genome.wustl.edu	37	chr19	54802103	54802103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacgcagcggggaatcagctGccccctccttggtcaaaagg	13	13	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	54802103	54802103	G	A	SNP	LILRA3	ENST00000251390	human	ensembl	69_37n	-1	known	missense	c.1085	p.A362V	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA3	HGNC	ENSG00000170866	175	0	0	109	14	11.29	-	-	-	A	54802103	G	A	54802103	3	1	550	1	0	0	0	0	1	0	0	0	8841	1319	46	4	242	4	LILRA3	19	54802103	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	424436	54802103	4326880	804	48866										
LILRA1	0	genome.wustl.edu	37	chr19	55110880	55110880	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atttaaagaattcttcaacaCctttaatgatttataagtga	4	5	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	55110880	55110880	C	G	SNP	LILRA1	ENST00000495417	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	LILRA1	HGNC	ENSG00000104974	55	0	0	25	4	13.79	-	-	-	G	55110880	C	G	55110880	1	3	550	0	1	0	0	0	0	0	0	0	8839	522	18	4		4	LILRA1	19	55110880	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	308777	55110880	4018103	805	48867										
NLRP2	0	genome.wustl.edu	37	chr19	55508823	55508824	+	Frame_Shift_Ins	INS	-	-	TC													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatgctgtttgaaaccttgINSacatgttccagtggcaccct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	55508823	55508824	-	TC	INS	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	frame_shift_ins	c.3018_3019	p.T1006fs	0.051:0.038	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	154	0	0	173	26	13.07	-	-	-	TC	55508824	-	TC	55508823	7	5	550	1	0	1	1	0	0	0	0	0	10549	1281	45	0	3060	0	NLRP2	19	55508823	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	397943	55508823	3620160	806	48868										
TNNT1	0	genome.wustl.edu	37	chr19	55649353	55649353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accaggtagccgccaaaatgGgcccccatgttggacagcac	11	14	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	55649353	55649353	G	A	SNP	TNNT1	ENST00000588981	human	ensembl	69_37n	-1	known	silent	c.477	p.A159	0.974	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048	67	0	0	45	33	42.31	-	-	-	A	55649353	G	A	55649353	2	1	550	1	0	0	0	0	0	0	0	1	16425	1219	43	4		4	TNNT1	19	55649353	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	140530	55649353	3479630	807	48869										
TNNT1	0	genome.wustl.edu	37	chr19	55649424	55649424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttcttggcctcttcctcttCcttcctcatcttctcctcct	2	19	6	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	55649424	55649424	C	T	SNP	TNNT1	ENST00000588981	human	ensembl	69_37n	-1	known	missense	c.406	p.E136K	1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048	48	0	0	52	49	48.51	-	-	-	T	55649424	C	T	55649424	3	4	550	1	0	0	0	0	1	0	0	0	16425	864	30	2	450	2	TNNT1	19	55649424	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	71	55649424	3479559	808	48870										
ZNF551	0	genome.wustl.edu	37	chr19	58198033	58198033	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	accacatcccctgtgcaaaaGtcatacttgggtagcacaag	8	12	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	58198033	58198033	G	C	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.390	p.K130N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	286	0	0	202	45	18.15	-	-	-	C	58198033	G	C	58198033	3	2	550	1	0	0	0	0	1	0	0	0	18079	1020	36	4	352	4	ZNF551	19	58198033	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2548609	58198033	930950	809	48871										
ZNF551	0	genome.wustl.edu	37	chr19	58198466	58198466	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaccagcaaattcacactGgacaaaagatgtttgagtgt	9	8	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	19	58198466	58198466	G	C	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.823	p.G275R	0.032	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	255	0	0	222	27	10.47	-	-	-	C	58198466	G	C	58198466	3	2	550	1	0	0	0	0	1	0	0	0	18079	1349	47	4	785	4	ZNF551	19	58198466	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	433	58198466	930517	810	48872										
SIRPG	0	genome.wustl.edu	37	chr20	1617132	1617132	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcgccgcagggcccaatacCacgggggcagagggtttggc	16	13	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	1617132	1617132	C	T	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	silent	c.450	p.V150	0.010	pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	139	0	0	86	16	15.69	-	-	-	T	1617132	C	T	1617132	2	4	550	1	0	0	0	0	0	0	0	1	14425	581	21	4		4	SIRPG	20	1617132	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09		1617132	61408388	811	48873										
FASTKD5	0	genome.wustl.edu	37	chr20	3129586	3129586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggcagaggctaatgtgttctGgagggtcctgtcccccatgc	14	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	3129586	3129586	G	A	SNP	FASTKD5	ENST00000380266	human	ensembl	69_37n	-1	known	missense	c.131	p.P44L	0.002	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251	92	0	0	134	16	10.67	-	-	-	A	3129586	G	A	3129586	3	1	550	1	0	0	0	0	1	0	0	0	5734	1348	47	4	2167	4	FASTKD5	20	3129586	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1512454	3129586	59895934	812	48874										
SPTLC3	0	genome.wustl.edu	37	chr20	13029833	13029833	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctactcctctctaaagtgTtctcagaagtggtgatgcag	10	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	13029833	13029833	T	G	SNP	SPTLC3	ENST00000476791	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SPTLC3	HGNC	ENSG00000172296	93	0	0	99	13	11.61	-	-	-	G	13029833	T	G	13029833	1	3	550	0	1	0	0	0	0	0	0	0	15216	1740	60	5		5	SPTLC3	20	13029833	RNA	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	9900247	13029833	49995687	813	48875										
ISM1	0	genome.wustl.edu	37	chr20	13279837	13279837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tccgctccatgctgtccctgGagagcaccacgctggcggca	12	16	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	13279837	13279837	G	A	SNP	ISM1	ENST00000262487	human	ensembl	69_37n	1	known	missense	c.1126	p.E376K	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230	39	0	0	28	4	12.5	-	-	-	A	13279837	G	A	13279837	3	1	550	1	0	0	0	0	1	0	0	0	7914	1175	41	2	1148	2	ISM1	20	13279837	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	250004	13279837	49745683	814	48876										
KIF16B	0	genome.wustl.edu	37	chr20	16486778	16486778	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcacgctcacttccggcaaGatcaaccaagtggatcttac	8	13	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	16486778	16486778	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.757	p.L253F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	462	0	0	326	53	13.98	-	-	-	A	16486778	G	A	16486778	3	1	550	1	0	0	0	0	1	0	0	0	8330	942	33	2	3272	2	KIF16B	20	16486778	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3206941	16486778	46538742	815	48877										
C20orf26	0	genome.wustl.edu	37	chr20	20340945	20340945	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcccaggcaatacctcaaaaGagtttttgaggaatccatct	8	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	20340945	20340945	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.3605	p.R1202K	0.045	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	91	0	0	105	39	27.08	-	-	-	A	20340945	G	A	20340945	3	1	550	1	0	0	0	0	1	0	0	0	2126	942	33	2	3739	2	C20orf26	20	20340945	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3854167	20340945	42684575	816	48878										
NKX2-2	0	genome.wustl.edu	37	chr20	21492891	21492891	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgcgtgggcgtgaggcggatGaggctggccaggtgttcgcg	21	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	21492891	21492891	G	C	SNP	NKX2-2	ENST00000377142	human	ensembl	69_37n	-1	known	silent	c.492	p.L164	0.998	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820	25	0	0	14	15	41.67	-	-	-	C	21492891	G	C	21492891	2	2	550	1	0	0	0	0	0	0	0	1	10522	1277	45	2		2	NKX2-2	20	21492891	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1151946	21492891	41532629	817	48879										
ABHD12	0	genome.wustl.edu	37	chr20	25290081	25290081	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctcctgctggggtcccttaCccagtgcccagagagtggcc	12	16	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	25290081	25290081	C	T	SNP	ABHD12	ENST00000376542	human	ensembl	69_37n	-1	known	splice_site	c.749+1	e7+1	1.000	-	-	-	no_errors	ABHD12	HGNC	ENSG00000100997	18	0	0	27	14	34.15	-	-	-	T	25290081	C	T	25290081	5	4	550	1	0	0	0	0	0	0	1	0	76	521	18	4	536	4	ABHD12	20	25290081	Splice_Site	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	3797190	25290081	37735439	818	48880										
HM13	0	genome.wustl.edu	37	chr20	30142632	30142632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttggagatgtcgtcattccaGgtgagcctgctggtgtgggg	17	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	30142632	30142632	G	A	SNP	HM13	ENST00000398174	human	ensembl	69_37n	1	known	missense	c.808	p.G270R	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	HM13	HGNC	ENSG00000101294	62	0	0	55	49	47.12	-	-	-	A	30142632	G	A	30142632	3	1	550	1	0	0	0	0	1	0	0	0	7268	1014	35	4	905	4	HM13	20	30142632	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4852551	30142632	32882888	819	48881										
ASXL1	0	genome.wustl.edu	37	chr20	31023562	31023562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacggaggacagcagtgaggCtgacactagagaagctgcag	15	9	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	31023562	31023562	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.3047	p.A1016V	0.020	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	79	0	0	61	34	35.79	-	-	-	T	31023562	C	T	31023562	3	4	550	1	0	0	0	0	1	0	0	0	1070	797	28	4	3103	4	ASXL1	20	31023562	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	880930	31023562	32001958	820	48882										
ASXL1	0	genome.wustl.edu	37	chr20	31024072	31024072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatagctgtgaaacaggcaCtggtcttgccaggattgagg	14	7	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	31024072	31024072	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.3557	p.T1186I	0.004	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	64	0	0	58	22	27.16	-	-	-	T	31024072	C	T	31024072	3	4	550	1	0	0	0	0	1	0	0	0	1070	565	20	4	3613	4	ASXL1	20	31024072	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	510	31024072	32001448	821	48883										
CHMP4B	0	genome.wustl.edu	37	chr20	32436337	32436337	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggcgcagatcgacggcacAttatcaaccatcgagttcca	9	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	32436337	32436337	A	T	SNP	CHMP4B	ENST00000217402	human	ensembl	69_37n	1	known	silent	c.255	p.T85	0.576	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP4B	HGNC	ENSG00000101421	52	0	0	36	7	16.28	-	-	-	T	32436337	A	T	32436337	2	4	550	1	0	0	0	0	0	0	0	1	3386	204	8	5		5	CHMP4B	20	32436337	Silent	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	1412265	32436337	30589183	822	48884										
NCOA6	0	genome.wustl.edu	37	chr20	33328676	33328676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctggactattggtcaaaaggGgagaaaccattgtggttgac	13	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	33328676	33328676	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.5384	p.P1795L	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	80	0	0	66	11	14.29	-	-	-	A	33328676	G	A	33328676	3	1	550	1	0	0	0	0	1	0	0	0	10305	1232	43	4	827	4	NCOA6	20	33328676	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	892339	33328676	29696844	823	48885										
FAM83C	0	genome.wustl.edu	37	chr20	33875168	33875168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggggctgggctcttggcttcCtgggagcccattctctggga	16	11	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	33875168	33875168	C	T	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	missense	c.1414	p.G472R	0.031	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	35	0	0	36	6	14.29	-	-	-	T	33875168	C	T	33875168	3	4	550	1	0	0	0	0	1	0	0	0	5680	690	24	4	833	4	FAM83C	20	33875168	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	546492	33875168	29150352	824	48886										
CPNE1	0	genome.wustl.edu	37	chr20	34214714	34214714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccatcagtcagcagcaacagCatgaagtattgctggggaca	11	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	34214714	34214714	C	T	SNP	CPNE1	ENST00000317677	human	ensembl	69_37n	-1	known	missense	c.1263	p.M421I	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE1	HGNC	ENSG00000214078	80	0	0	39	37	48.68	-	-	-	T	34214714	C	T	34214714	3	4	550	1	0	0	0	0	1	0	0	0	3841	710	25	4	373	4	CPNE1	20	34214714	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	339546	34214714	28810806	825	48887										
EPB41L1	0	genome.wustl.edu	37	chr20	34782145	34782145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccacttcagcagagttctccCgcccagcctcggtcagcgag	10	17	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	34782145	34782145	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	69_37n	1	known	missense	c.1312	p.R438C	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L1	HGNC	ENSG00000088367	54	0	0	60	10	14.29	-	-	-	T	34782145	C	T	34782145	3	4	550	1	0	0	0	0	1	0	0	0	5189	652	23	1	1354	1	EPB41L1	20	34782145	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	567431	34782145	28243375	826	48888										
SAMHD1	0	genome.wustl.edu	37	chr20	35521460	35521460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgttatgagtggggctataaCatcgccatcctattaggaag	11	7	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	35521460	35521460	C	T	SNP	SAMHD1	ENST00000262878	human	ensembl	69_37n	-1	known	missense	c.1756	p.V586I	0.097	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347	176	0	0	197	22	10.05	-	-	-	T	35521460	C	T	35521460	3	4	550	1	0	0	0	0	1	0	0	0	13914	478	17	4	128	4	SAMHD1	20	35521460	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	739315	35521460	27504060	827	48889										
CTNNBL1	0	genome.wustl.edu	37	chr20	36361410	36361410	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgtggtggaggaagcggatGatgacaaaaaaaggctgctg	16	5	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	36361410	36361410	G	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	missense	c.79	p.D27N	1.000	pfam_DUF1716_euk	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	63	0	0	74	12	13.95	-	-	-	A	36361410	G	A	36361410	3	1	550	1	0	0	0	0	1	0	0	0	4050	1290	45	2	166	2	CTNNBL1	20	36361410	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	839950	36361410	26664110	828	48890										
RPRD1B	0	genome.wustl.edu	37	chr20	36718519	36718519	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	actacagactttttctcccaCttcatattttcatgcccccc	2	16	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	36718519	36718519	C	T	SNP	RPRD1B	ENST00000471511	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	RPRD1B	HGNC	ENSG00000101413	14	0	0	22	12	35.29	-	-	-	T	36718519	C	T	36718519	1	4	550	0	1	0	0	0	0	0	0	0	13702	580	20	4		4	RPRD1B	20	36718519	RNA	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	357109	36718519	26307001	829	48891										
SERINC3	0	genome.wustl.edu	37	chr20	43138535	43138535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgagtagagatacctaccagCataccacaaccttgggtttc	8	11	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	43138535	43138535	C	T	SNP	SERINC3	ENST00000255175	human	ensembl	69_37n	-1	known	missense	c.610	p.A204T	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824	266	0	0	171	22	11.34	-	-	-	T	43138535	C	T	43138535	3	4	550	1	0	0	0	0	1	0	0	0	14169	710	25	4	835	4	SERINC3	20	43138535	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6420016	43138535	19886985	830	48892										
KCNK15	0	genome.wustl.edu	37	chr20	43378957	43378957	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tggacgtgcgtgtccacggaGaacctggtggtggccgggct	18	10	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	43378957	43378957	G	A	SNP	KCNK15	ENST00000372861	human	ensembl	69_37n	1	known	silent	c.471	p.E157	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK5,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	-	no_errors	KCNK15	HGNC	ENSG00000124249	12	0	0	16	5	23.81	-	-	-	A	43378957	G	A	43378957	2	1	550	1	0	0	0	0	0	0	0	1	8116	933	33	2		2	KCNK15	20	43378957	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	240422	43378957	19646563	831	48893										
NCOA5	0	genome.wustl.edu	37	chr20	44691320	44691320	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgtttccggcagcaaccgaGggggatgcagagctgctatt	15	9	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	44691320	44691320	G	A	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	silent	c.1359	p.P453	0.969	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	172	0	0	197	23	10.45	-	-	-	A	44691320	G	A	44691320	2	1	550	1	0	0	0	0	0	0	0	1	10304	987	35	4		4	NCOA5	20	44691320	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1312363	44691320	18334200	832	48894										
ELMO2	0	genome.wustl.edu	37	chr20	45002083	45002083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcatctccttccaggtcttGttcaacagctggatgcagat	8	12	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	45002083	45002083	G	A	SNP	ELMO2	ENST00000467800	human	ensembl	69_37n	-1	known	missense	c.545	p.T182I	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELMO2	HGNC	ENSG00000062598	132	0	0	98	47	32.19	-	-	-	A	45002083	G	A	45002083	3	1	550	1	0	0	0	0	1	0	0	0	5103	1368	48	4	819	4	ELMO2	20	45002083	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	310763	45002083	18023437	833	48895										
ELMO2	0	genome.wustl.edu	37	chr20	45003905	45003905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcattttgtagtcctttgtGtacatggctttgcgtttttc	9	7	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	45003905	45003905	G	A	SNP	ELMO2	ENST00000467800	human	ensembl	69_37n	-1	known	missense	c.209	p.T70I	0.999	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELMO2	HGNC	ENSG00000062598	192	0	0	152	25	14.04	-	-	-	A	45003905	G	A	45003905	3	1	550	1	0	0	0	0	1	0	0	0	5103	1372	48	4	1167	4	ELMO2	20	45003905	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	1822	45003905	18021615	834	48896										
SLC13A3	0	genome.wustl.edu	37	chr20	45204268	45204268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gagaaggatgatgttccaggGcactgtctcctgggccttct	13	10	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	45204268	45204268	G	A	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1276	p.P426S	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	17	0	0	17	9	34.62	-	-	-	A	45204268	G	A	45204268	3	1	550	1	0	0	0	0	1	0	0	0	14482	1203	42	4	548	4	SLC13A3	20	45204268	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	200363	45204268	17821252	835	48897										
BCAS4	0	genome.wustl.edu	37	chr20	49457075	49457075	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	acctctttgcatcttacagaGttaaacagctaaaagaagta	6	8	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	49457075	49457075	G	A	SNP	BCAS4	ENST00000463943	human	ensembl	69_37n	1	known	silent	c.279	p.E93	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BCAS4	HGNC	ENSG00000124243	103	0	0	108	18	14.29	-	-	-	A	49457075	G	A	49457075	2	1	550	1	0	0	0	0	0	0	0	1	1357	1044	36	4		4	BCAS4	20	49457075	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4252807	49457075	13568445	836	48898										
ZFP64	0	genome.wustl.edu	37	chr20	50776785	50776785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cttgttgaggctgctgctgtCggcagcggcgtagtcacacg	15	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	50776785	50776785	C	T	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.640	p.D214N	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	150	0	0	163	24	12.77	-	-	-	T	50776785	C	T	50776785	3	4	550	1	0	0	0	0	1	0	0	0	17748	884	31	1	2604	1	ZFP64	20	50776785	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1319710	50776785	12248735	837	48899										
CTCFL	0	genome.wustl.edu	37	chr20	56093764	56093764	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cacttggagtaacttgtacaGcagcctctactaagatgcca	8	11	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	56093764	56093764	G	A	SNP	CTCFL	ENST00000481655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTCFL	HGNC	ENSG00000124092	114	0	0	138	23	14.29	-	-	-	A	56093764	G	A	56093764	1	1	550	0	1	0	0	0	0	0	0	0	4033	986	34	4		4	CTCFL	20	56093764	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5316979	56093764	6931756	838	48900										
OSBPL2	0	genome.wustl.edu	37	chr20	60869004	60869004	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggctggacttcctcgagtgGccactgtgagcctcgtcaca	12	13	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	60869004	60869004	G	C	SNP	OSBPL2	ENST00000439951	human	ensembl	69_37n	1	known	missense	c.1104	p.W368C	0.020	NULL	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703	16	0	0	27	5	14.71	-	-	-	C	60869004	G	C	60869004	3	2	550	1	0	0	0	0	1	0	0	0	11351	1218	42	4		4	OSBPL2	20	60869004	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4775240	60869004	2156516	839	48901										
OGFR	0	genome.wustl.edu	37	chr20	61441001	61441001	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacctccttgaggacaatcaCtcctacatccagtggtgagt	9	12	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	20	61441001	61441001	C	T	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	1	known	silent	c.384	p.H128	1.000	pfam_OGF_rcpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	15	0	0	2	8	80	-	-	-	T	61441001	C	T	61441001	2	4	550	1	0	0	0	0	0	0	0	1	10916	564	20	4		4	OGFR	20	61441001	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	571997	61441001	1584519	840	48902										
C21orf7	0	genome.wustl.edu	37	chr21	30547137	30547137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggaggagaatcggacgttgaGgttggcccagtctcaatgtg	16	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	30547137	30547137	G	A	SNP	C21orf7	ENST00000341618	human	ensembl	69_37n	1	known	missense	c.653	p.R218K	1.000	NULL	NULL	-	no_errors	C21orf7	HGNC	ENSG00000156265	131	0	0	175	20	10.26	-	-	-	A	30547137	G	A	30547137	3	1	550	1	0	0	0	0	1	0	0	0	2152	1000	35	4	679	4	C21orf7	21	30547137	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		30547137	17582758	841	48903										
TTC3	0	genome.wustl.edu	37	chr21	38572589	38572589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgttcaaatcaaaaaacgtGcgtgtgctcaaatgtgggca	11	7	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	38572589	38572589	G	A	SNP	TTC3	ENST00000428693	human	ensembl	69_37n	1	putative	missense	c.781	p.A261T	0.002	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTC3	HGNC	ENSG00000182670	83	0	0	32	18	36	-	-	-	A	38572589	G	A	38572589	3	1	550	1	0	0	0	0	1	0	0	0	16794	1306	46	4	6081	4	TTC3	21	38572589	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8025452	38572589	9557306	842	48904										
FAM3B	0	genome.wustl.edu	37	chr21	42694932	42694932	+	Frame_Shift_Del	DEL	T	T	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctcgcagagctcattccagaTgcacccctgtccagtgctgc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	42694932	42694932	T	-	DEL	FAM3B	ENST00000357985	human	ensembl	69_37n	1	known	frame_shift_del	c.102	p.D34fs	0.000	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844	49	0	0	24	28	52.83	-	-	-	-	42694932	T	-	42694932	7	5	550	1	0	1	0	1	0	0	0	0	5603	1461	51	0	108	0	FAM3B	21	42694932	Frame_Shift_Del	DEL	T	TCGA-BH-A0HF-01A-11W-A071-09	4122343	42694932	5434963	843	48905	412	2								
FAM3B	0	genome.wustl.edu	37	chr21	42694934	42694935	+	In_Frame_Ins	INS	-	-	TTT													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcagagctcattccagatgcINSacccctgtccagtgctgcct							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	42694934	42694935	-	TTT	INS	FAM3B	ENST00000357985	human	ensembl	69_37n	1	known	in_frame_ins	c.104_105	p.36in_frame_insL	0.000:0.000	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844	51	0	0	24	28	53.85	-	-	-	TTT	42694935	-	TTT	42694934	7	5	550	1	0	1	1	0	0	0	0	0	5603	710	25	0	110	0	FAM3B	21	42694934	In_Frame_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	2	42694934	5434961	844	48906	412	2								
TRAPPC10	0	genome.wustl.edu	37	chr21	45509781	45509781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaccttcagcgtacccttcaGgaccacacacagcctcctgt	7	17	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	45509781	45509781	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.2837	p.R946K	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	38	0	0	32	6	15.79	-	-	-	A	45509781	G	A	45509781	3	1	550	1	0	0	0	0	1	0	0	0	16553	1000	35	4	2907	4	TRAPPC10	21	45509781	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2814847	45509781	2620114	845	48907										
DIP2A	0	genome.wustl.edu	37	chr21	47986581	47986581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctctgtcatccgagcacacaGgagcatcgctgagtggtaag	12	11	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	21	47986581	47986581	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.4451	p.R1484K	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	55	0	0	27	5	15.62	-	-	-	A	47986581	G	A	47986581	3	1	550	1	0	0	0	0	1	0	0	0	4563	1000	35	4	4707	4	DIP2A	21	47986581	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	2476800	47986581	143314	846	48908										
CECR1	0	genome.wustl.edu	37	chr22	17669255	17669255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctccggcgtggaagaagtaaGgcagcttaacgccatccttg	12	11	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	17669255	17669255	G	A	SNP	CECR1	ENST00000262607	human	ensembl	69_37n	-1	known	missense	c.1055	p.P352L	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072	83	0	0	39	9	18.75	-	-	-	A	17669255	G	A	17669255	3	1	550	1	0	0	0	0	1	0	0	0	3234	1000	35	4	496	4	CECR1	22	17669255	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		17669255	33635311	847	48909										
CRYBB3	0	genome.wustl.edu	37	chr22	25598725	25598725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcctgaccgacagcctgctgGagaaggtgggctccatccaa	13	13	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	25598725	25598725	G	A	SNP	CRYBB3	ENST00000215855	human	ensembl	69_37n	1	known	missense	c.160	p.E54K	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053	40	0	0	37	14	27.45	-	-	-	A	25598725	G	A	25598725	3	1	550	1	0	0	0	0	1	0	0	0	3942	1175	41	2	166	2	CRYBB3	22	25598725	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	7929470	25598725	25705841	848	48910										
ZNRF3	0	genome.wustl.edu	37	chr22	29442853	29442853	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gactgtgccatctgtctggaGaagtacattgatggagaggt	14	6	2	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	29442853	29442853	G	C	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	missense	c.894	p.E298D	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	98	0	0	52	12	18.75	-	-	-	C	29442853	G	C	29442853	3	2	550	1	0	0	0	0	1	0	0	0	18306	933	33	2	612	2	ZNRF3	22	29442853	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3844128	29442853	21861713	849	48911										
ASCC2	0	genome.wustl.edu	37	chr22	30221109	30221109	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgagtggacatgcggaggaaGgtgagaaaaacacttcgatg	15	5	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	30221109	30221109	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.378	p.T126	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	114	0	0	155	37	19.27	-	-	-	A	30221109	G	A	30221109	2	1	550	1	0	0	0	0	0	0	0	1	1036	987	35	4		4	ASCC2	22	30221109	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	778256	30221109	21083457	850	48912										
SEC14L4	0	genome.wustl.edu	37	chr22	30891945	30891945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	atgtcttcggatttctgcagGtcaaagtttcgagctgcaag	11	8	3	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	30891945	30891945	G	A	SNP	SEC14L4	ENST00000540456	human	ensembl	69_37n	-1	known	missense	c.50	p.T17I	1.000	NULL	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD	-	no_errors	SEC14L4	HGNC	ENSG00000133488	33	0	0	19	22	53.66	-	-	-	A	30891945	G	A	30891945	3	1	550	1	0	0	0	0	1	0	0	0	14072	1252	44	4	1122	4	SEC14L4	22	30891945	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	670836	30891945	20412621	851	48913										
PES1	0	genome.wustl.edu	37	chr22	30974947	30974948	+	Frame_Shift_Ins	INS	-	-	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctgggccagccgctgcttaINStcctccagcttcaaggtgcc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	30974947	30974948	-	T	INS	PES1	ENST00000354694	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1560_1559	p.D520fs	0.988:1.000	NULL	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029	42	0	0	33	168	83.58	-	-	-	T	30974948	-	T	30974947	7	5	550	1	0	1	1	0	0	0	0	0	11806	446	16	0	214	0	PES1	22	30974947	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	83002	30974947	20329619	852	48914	413	2								
PES1	0	genome.wustl.edu	37	chr22	30974949	30974949	+	Missense_Mutation	SNP	C	C	G													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgggccagccgctgcttatCctccagcttcaaggtgcctg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	30974949	30974949	C	G	SNP	PES1	ENST00000354694	human	ensembl	69_37n	-1	known	missense	c.1558	p.D520H	1.000	NULL	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029	40	0	0	27	168	84.85	-	-	-	G	30974949	C	G	30974949	3	3	550	1	0	0	0	0	1	0	0	0	11806	855	30	2	216	2	PES1	22	30974949	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2	30974949	20329617	853	48915	413	2								
APOL1	0	genome.wustl.edu	37	chr22	36661498	36661498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcacagagggaggcagccttGtactcttggaacctgggatg	14	9	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	36661498	36661498	G	A	SNP	APOL1	ENST00000319136	human	ensembl	69_37n	1	known	missense	c.664	p.V222I	0.003	pfam_ApoL	pfam_ApoL	-	no_errors	APOL1	HGNC	ENSG00000100342	172	0	0	133	22	14.19	-	-	-	A	36661498	G	A	36661498	3	1	550	1	0	0	0	0	1	0	0	0	807	1377	48	4	686	4	APOL1	22	36661498	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	5686549	36661498	14643068	854	48916										
TNRC6B	0	genome.wustl.edu	37	chr22	40661003	40661003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgggaacgaatgtaatcttGgggtctggaaatctgaccct	12	8	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	40661003	40661003	G	A	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.769	p.G257R	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	247	0	0	194	41	17.45	-	-	-	A	40661003	G	A	40661003	3	1	550	1	0	0	0	0	1	0	0	0	16436	1348	47	4	908	4	TNRC6B	22	40661003	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3999505	40661003	10643563	855	48917										
EP300	0	genome.wustl.edu	37	chr22	41527458	41527458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aggggtgggtcaacagtctgCccccaacctaagcactgtta	11	12	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	41527458	41527458	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.1349	p.A450V	0.961	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	225	0	0	207	36	14.81	-	-	-	T	41527458	C	T	41527458	3	4	550	1	0	0	0	0	1	0	0	0	5185	739	26	4	1371	4	EP300	22	41527458	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	866455	41527458	9777108	856	48918										
NHP2L1	0	genome.wustl.edu	37	chr22	42070995	42070995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggatctgctgtttcagctgcGagccttctttgatggtgaca	12	9	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	42070995	42070995	G	A	SNP	NHP2L1	ENST00000215956	human	ensembl	69_37n	-1	known	missense	c.329	p.S110L	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,pfam_RNase_P_Pop3	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,pfam_RNase_P_Pop3,prints_H/ACA_rnp_Nhp2_euk,prints_Ribosomal_L7Ae/L8/Nhp2,prints_Ribosomal_L7Ae_prok	-	no_errors	NHP2L1	HGNC	ENSG00000100138	107	0	0	232	80	25.64	-	-	-	A	42070995	G	A	42070995	3	1	550	1	0	0	0	0	1	0	0	0	10482	1059	37	1	61	1	NHP2L1	22	42070995	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	543537	42070995	9233571	857	48919										
SREBF2	0	genome.wustl.edu	37	chr22	42273258	42273258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agatgagccagactctcctcCtgtggcgctgggcatggtag	14	11	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	42273258	42273258	C	T	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	missense	c.1412	p.P471L	0.788	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	116	0	0	108	12	10	-	-	-	T	42273258	C	T	42273258	3	4	550	1	0	0	0	0	1	0	0	0	15233	681	24	4	1442	4	SREBF2	22	42273258	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	202263	42273258	9031308	858	48920										
GRAMD4	0	genome.wustl.edu	37	chr22	47062724	47062724	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gtgttttctgttcgccagggGgtggcggatacagtggagca	17	7	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	47062724	47062724	G	A	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	missense	c.812	p.G271E	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	23	0	0	6	6	50	-	-	-	A	47062724	G	A	47062724	3	1	550	1	0	0	0	0	1	0	0	0	6803	1232	43	4	846	4	GRAMD4	22	47062724	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4789466	47062724	4241842	859	48921										
ZBED4	0	genome.wustl.edu	37	chr22	50280505	50280505	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gccgcagaggagaacctgtgGtcacttgtggccaaggtgaa	15	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	22	50280505	50280505	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	nonsense	c.3195	p.W1065*	1.000	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	52	0	0	39	26	40	-	-	-	A	50280505	G	A	50280505	4	1	550	1	0	0	0	0	0	1	0	0	17616	1270	44	4	3197	4	ZBED4	22	50280505	Nonsense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3217781	50280505	1024061	860	48922										
ZBED1	0	genome.wustl.edu	37	chrX	2407717	2407717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccccaccaggagacgcggttGctcaccagcatgcagtgggc	13	15	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	2407717	2407717	G	A	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	silent	c.1044	p.S348	0.978	superfamily_RNaseH-like_dom	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	46	0	0	18	5	20.83	-	-	-	A	2407717	G	A	2407717	2	1	550	1	0	0	0	0	0	0	0	1	17614	1310	46	4		4	ZBED1	23	2407717	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09		2407717	152862843	861	48923										
WWC3	0	genome.wustl.edu	37	chrX	10085170	10085170	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ctgtctcatttcagcctgtgTgccagcaccctgacggtgtc	10	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	10085170	10085170	T	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.1071	p.C357W	0.807	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	30	0	0	16	6	27.27	-	-	-	G	10085170	T	G	10085170	3	3	550	1	0	0	0	0	1	0	0	0	17510	1702	59	5	1109	5	WWC3	23	10085170	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	7677453	10085170	145185390	862	48924										
WWC3	0	genome.wustl.edu	37	chrX	10085366	10085366	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcccttcgactctctggggCgagatgctcccttttcagag	10	13	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	10085366	10085366	C	T	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	nonsense	c.1267	p.R423*	0.017	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	38	0	0	30	10	25	-	-	-	T	10085366	C	T	10085366	4	4	550	1	0	0	0	0	0	1	0	0	17510	760	27	1	1305	1	WWC3	23	10085366	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	196	10085366	145185194	863	48925										
MID1	0	genome.wustl.edu	37	chrX	10450569	10450569	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gaaacgcgcatgatcattctCcttcagagagtgttccgctt	9	11	3	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	10450569	10450569	C	A	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	nonsense	c.964	p.E322*	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	274	1	0.36	182	31	14.55	-	-	-	A	10450569	C	A	10450569	4	1	550	1	0	0	0	0	0	1	0	0	9647	864	30	2	1063	2	MID1	23	10450569	Nonsense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	365203	10450569	144819991	864	48926										
REPS2	0	genome.wustl.edu	37	chrX	17065588	17065588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgatcccttcagccagaccCaagctctttcatttcaggta	6	15	4	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	17065588	17065588	C	T	SNP	REPS2	ENST00000357277	human	ensembl	69_37n	1	known	missense	c.890	p.P297L	0.989	smart_EPS15_homology,pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891	478	1	0.21	274	40	12.74	-	-	-	T	17065588	C	T	17065588	3	4	550	1	0	0	0	0	1	0	0	0	13312	594	21	4	912	4	REPS2	23	17065588	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6615019	17065588	138204972	865	48927										
ACOT9	0	genome.wustl.edu	37	chrX	23748991	23748991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttcaggctcactgcccaaagGcaagagaacttcaatataac	7	11	3	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	23748991	23748991	G	A	SNP	ACOT9	ENST00000379303	human	ensembl	69_37n	-1	known	missense	c.304	p.P102S	1.000	NULL	pfam_Thioestr_supf	-	no_errors	ACOT9	HGNC	ENSG00000123130	227	0	0	237	34	12.5	-	-	-	A	23748991	G	A	23748991	3	1	550	1	0	0	0	0	1	0	0	0	157	1203	42	4	1090	4	ACOT9	23	23748991	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6683403	23748991	131521569	866	48928										
MAGEB3	0	genome.wustl.edu	37	chrX	30254052	30254052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tacagccatcatgcctcgggGtcagaagagtacgctccatg	11	12	2	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	30254052	30254052	G	C	SNP	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	missense	c.11	p.G4A	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	67	0	0	28	16	36.36	-	-	-	C	30254052	G	C	30254052	3	2	550	1	0	0	0	0	1	0	0	0	9248	1261	44	4	13	4	MAGEB3	23	30254052	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	6505061	30254052	125016508	867	48929										
OTC	0	genome.wustl.edu	37	chrX	38271225	38271225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cgatcactagtgttcccagaGgcagaaaacagaaagtggac	11	9	1	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	38271225	38271225	G	A	SNP	OTC	ENST00000039007	human	ensembl	69_37n	1	known	silent	c.978	p.E326	1.000	pfam_Asp_carbamoyltransf_Asp/Orn-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf_euk,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473	487	0	0	349	124	26.22	-	-	-	A	38271225	G	A	38271225	2	1	550	1	0	0	0	0	0	0	0	1	11374	991	35	4		4	OTC	23	38271225	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	8017173	38271225	116999335	868	48930										
DDX3X	0	genome.wustl.edu	37	chrX	41200788	41200788	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctagcaaagataaggatgCgtatagcagttttggatctc	10	6	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	41200788	41200788	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.203	p.A68V	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	122	0	0	116	13	10	-	-	-	T	41200788	C	T	41200788	3	4	550	1	0	0	0	0	1	0	0	0	4389	768	27	1	217	1	DDX3X	23	41200788	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2929563	41200788	114069772	869	48931										
SUV39H1	0	genome.wustl.edu	37	chrX	48565946	48565946	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtgggactgagtcctgccgCaaatacctcttctagccctt	9	13	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	48565946	48565946	C	T	SNP	SUV39H1	ENST00000337852	human	ensembl	69_37n	1	known	silent	c.1257	p.R419	1.000	smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_Post-SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945	184	0	0	61	10	14.08	-	-	-	T	48565946	C	T	48565946	2	4	550	1	0	0	0	0	0	0	0	1	15503	697	25	4		4	SUV39H1	23	48565946	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	7365158	48565946	106704614	870	48932										
MAGED1	0	genome.wustl.edu	37	chrX	51641410	51641410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gggaggcactacgcaagatgGgactgcgtcctgggtatgat	16	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	51641410	51641410	G	A	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	missense	c.1936	p.G646R	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	119	0	0	70	22	23.91	-	-	-	A	51641410	G	A	51641410	3	1	550	1	0	0	0	0	1	0	0	0	9254	1233	43	4	1970	4	MAGED1	23	51641410	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3075464	51641410	103629150	871	48933										
PHF8	0	genome.wustl.edu	37	chrX	54037619	54037619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tagcacttgtccacctggtcCccaaagaacatctcattctg	6	14	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	54037619	54037619	C	T	SNP	PHF8	ENST00000396282	human	ensembl	69_37n	-1	novel	missense	c.593	p.G198E	0.968	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHF8	HGNC	ENSG00000172943	183	0	0	100	17	14.53	-	-	-	T	54037619	C	T	54037619	3	4	550	1	0	0	0	0	1	0	0	0	11914	610	22	4	2422	4	PHF8	23	54037619	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	2396209	54037619	101232941	872	48934										
LAS1L	0	genome.wustl.edu	37	chrX	64749665	64749665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	cctcttcctctatcccttccCtgaactcctccaactcccag	2	21	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	64749665	64749665	C	T	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.608	p.R203K	0.000	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	229	0	0	201	77	27.7	-	-	-	T	64749665	C	T	64749665	3	4	550	1	0	0	0	0	1	0	0	0	8690	681	24	4	1636	4	LAS1L	23	64749665	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	10712046	64749665	90520895	873	48935										
PGK1	0	genome.wustl.edu	37	chrX	77373625	77373625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gctgaactactttgcaaaggCcttggagagcccagagcgac	12	11	0	3			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	77373625	77373625	C	T	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.599	p.A200V	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	190	0	0	166	93	35.91	-	-	-	T	77373625	C	T	77373625	3	4	550	1	0	0	0	0	1	0	0	0	11864	739	26	4	621	4	PGK1	23	77373625	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	12623960	77373625	77896935	874	48936										
CYSLTR1	0	genome.wustl.edu	37	chrX	77528532	77528532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gactaaaaaggcagcggtcaCgaccatgatcattcctatag	9	10	2	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	77528532	77528532	C	T	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	missense	c.712	p.V238M	0.981	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	195	0	0	172	122	41.5	-	-	-	T	77528532	C	T	77528532	3	4	550	1	0	0	0	0	1	0	0	0	4232	536	19	1	305	1	CYSLTR1	23	77528532	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	154907	77528532	77742028	875	48937										
HDX	0	genome.wustl.edu	37	chrX	83616512	83616512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	aacatttaattcagttgccaCagcttcaattttctctctac	3	11	4	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	83616512	83616512	C	T	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.1414	p.V472M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	115	0	0	93	23	19.83	-	-	-	T	83616512	C	T	83616512	3	4	550	1	0	0	0	0	1	0	0	0	7077	478	17	4	682	4	HDX	23	83616512	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	6087980	83616512	71654048	876	48938										
DIAPH2	0	genome.wustl.edu	37	chrX	96854258	96854258	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgtttgtcttacagataacaGacgagtacctttggaaaggt	10	6	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	96854258	96854258	G	A	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.3248	p.R1083K	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	73	0	0	45	8	15.09	-	-	-	A	96854258	G	A	96854258	3	1	550	1	0	0	0	0	1	0	0	0	4555	942	33	2	3408	2	DIAPH2	23	96854258	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	13237746	96854258	58416302	877	48939										
TMEM35	0	genome.wustl.edu	37	chrX	100349768	100349769	+	Frame_Shift_Ins	INS	-	-	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tcttccaccagctggtcggtINSgatcctctcaaacgctacgc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	100349768	100349769	-	A	INS	TMEM35	ENST00000372930	human	ensembl	69_37n	1	known	frame_shift_ins	c.327_328	p.D109fs	0.693:1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950	172	0	0	210	24	10.26	-	-	-	A	100349769	-	A	100349768	7	5	550	1	0	1	1	0	0	0	0	0	16252	1683	59	0	333	0	TMEM35	23	100349768	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	3495510	100349768	54920792	878	48940										
GPRASP1	0	genome.wustl.edu	37	chrX	101910197	101910197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agtatggggactggggctagCagtaaatccagaccaaggac	14	8	0	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	101910197	101910197	C	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	silent	c.1356	p.S452	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	215	0	0	183	33	15.21	-	-	-	T	101910197	C	T	101910197	2	4	550	1	0	0	0	0	0	0	0	1	6773	709	25	4		4	GPRASP1	23	101910197	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	1560429	101910197	53360363	879	48941										
GPRASP2	0	genome.wustl.edu	37	chrX	101972188	101972188	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ataaaaagtggaaagatgtcCttaattgatgatgatttcag	9	3	1	4			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	101972188	101972188	C	T	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	silent	c.2391	p.S797	0.091	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	408	0	0	316	42	11.73	-	-	-	T	101972188	C	T	101972188	2	4	550	1	0	0	0	0	0	0	0	1	6774	668	24	4		4	GPRASP2	23	101972188	Silent	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	61991	101972188	53298372	880	48942										
TRPC5	0	genome.wustl.edu	37	chrX	111155772	111155772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gacggaaggcagttaggatgGggtcctcacttgataaggca	15	7	1	1			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	111155772	111155772	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.647	p.P216L	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	245	0	0	252	199	44.12	-	-	-	A	111155772	G	A	111155772	3	1	550	1	0	0	0	0	1	0	0	0	16678	1232	43	4	2310	4	TRPC5	23	111155772	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	9183584	111155772	44114788	881	48943										
SLC6A14	0	genome.wustl.edu	37	chrX	115582836	115582836	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ttctcaagttgtaaaatcagGtatataatactatatattat	4	4	2	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	115582836	115582836	G	A	SNP	SLC6A14	ENST00000371900	human	ensembl	69_37n	1	known	splice_site	c.1159+1	e8+1	1.000	-	-	-	no_errors	SLC6A14	HGNC	ENSG00000087916	269	0	0	314	45	12.5	-	-	-	A	115582836	G	A	115582836	5	1	550	1	0	0	0	0	0	0	1	0	14766	1275	44	4	1190	4	SLC6A14	23	115582836	Splice_Site	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	4427064	115582836	39687724	882	48944										
ODZ1	0	genome.wustl.edu	37	chrX	123518321	123518322	+	Frame_Shift_Ins	INS	-	-	A													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tattcatagaagtaccttgtINStatattggcatctactccta							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	123518321	123518322	-	A	INS	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6460_6459	p.T2153fs	1.000:0.604	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	368	0	0	275	35	11.29	-	-	-	A	123518322	-	A	123518321	7	5	550	1	0	1	1	0	0	0	0	0	10907	1725	60	0	1750	0	ODZ1	23	123518321	Frame_Shift_Ins	INS	-	TCGA-BH-A0HF-01A-11W-A071-09	7935485	123518321	31752239	883	48945	414	2								
ODZ1	0	genome.wustl.edu	37	chrX	123518323	123518323	+	Missense_Mutation	SNP	A	A	T													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	attcatagaagtaccttgttAtattggcatctactcctacc							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	123518323	123518323	A	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.6458	p.I2153K	0.976	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	382	0	0	278	39	12.26	-	-	-	T	123518323	A	T	123518323	3	4	550	1	0	0	0	0	1	0	0	0	10907	449	16	5	1752	5	ODZ1	23	123518323	Missense_Mutation	SNP	A	TCGA-BH-A0HF-01A-11W-A071-09	2	123518323	31752237	884	48946	414	2								
SASH3	0	genome.wustl.edu	37	chrX	128922516	128922516	+	Frame_Shift_Del	DEL	T	T	-													0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ccgaaccatgaacaggaagaTgggcaagatgatggtgaagg							TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	128922516	128922516	T	-	DEL	SASH3	ENST00000356892	human	ensembl	69_37n	1	known	frame_shift_del	c.263	p.M88fs	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122	54	0	0	49	38	43.18	-	-	-	-	128922516	T	-	128922516	7	5	550	1	0	1	0	1	0	0	0	0	13936	1464	51	0	273	0	SASH3	23	128922516	Frame_Shift_Del	DEL	T	TCGA-BH-A0HF-01A-11W-A071-09	5404193	128922516	26348044	885	48947										
MAGEA9B	0	genome.wustl.edu	37	chrX	148664778	148664778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	catcaggcccaagtcctctcCttgggcttcaaggtcttcat	8	14	5	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	148664778	148664778	C	T	SNP	MAGEA9B	ENST00000243314	human	ensembl	69_37n	-1	known	missense	c.58	p.G20R	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA9B	HGNC	ENSG00000123584	57	0	0	29	5	14.71	-	-	-	T	148664778	C	T	148664778	3	4	550	1	0	0	0	0	1	0	0	0	9242	690	24	4	893	4	MAGEA9B	23	148664778	Missense_Mutation	SNP	C	TCGA-BH-A0HF-01A-11W-A071-09	19742262	148664778	6605782	886	48948										
MAMLD1	0	genome.wustl.edu	37	chrX	149638571	149638571	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	agcaaggagtttgcttctagTtgcagccaagttactggcat	11	8	1	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	149638571	149638571	T	G	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	missense	c.651	p.S217R	0.340	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	356	0	0	287	79	21.58	-	-	-	G	149638571	T	G	149638571	3	3	550	1	0	0	0	0	1	0	0	0	9279	1722	60	5	736	5	MAMLD1	23	149638571	Missense_Mutation	SNP	T	TCGA-BH-A0HF-01A-11W-A071-09	973793	149638571	5631989	887	48949										
MTM1	0	genome.wustl.edu	37	chrX	149840106	149840106	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	gcattagagctcgaaataaaGgcgatagctgactttcattt	9	7	1	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	149840106	149840106	G	A	SNP	MTM1	ENST00000306167	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTM1	HGNC	ENSG00000171100	69	0	0	88	14	13.73	-	-	-	A	149840106	G	A	149840106	1	1	550	0	1	0	0	0	0	0	0	0	10009	1015	35	4		4	MTM1	23	149840106	RNA	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	201535	149840106	5430454	888	48950										
IDH3G	0	genome.wustl.edu	37	chrX	153055739	153055739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	tgccgcccgccatacttagcGgacggaggctgtgggaggca	16	12	0	0			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	153055739	153055739	G	A	SNP	IDH3G	ENST00000217901	human	ensembl	69_37n	-1	known	silent	c.144	p.S48	0.102	NULL	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829	24	0	0	25	11	30.56	-	-	-	A	153055739	G	A	153055739	2	1	550	1	0	0	0	0	0	0	0	1	7552	1103	39	1		1	IDH3G	23	153055739	Silent	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	3215633	153055739	2214821	889	48951										
NAA10	0	genome.wustl.edu	37	chrX	153197996	153197996	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157526254375729	135	0.00533323327732915	1.30891756548536	1.49313559322034	1.30525760466944	3.49602060395941e-69	1.70955407533615e-66	32	ggtggaccttacataccaatGaggtgatatgtccatggggc	13	8	0	2			TCGA-BH-A0HF-01A-11W-A071-09	TCGA-BH-A0HF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	464a1d47-a56a-4667-b4c5-911e5d4a7363	6116e3af-4c46-4be9-98b3-ef1d6c3cdf65	X	153197996	153197996	G	A	SNP	NAA10	ENST00000464845	human	ensembl	69_37n	-1	known	missense	c.221	p.S74L	0.998	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA10	HGNC	ENSG00000102030	15	0	0	12	29	70.73	-	-	-	A	153197996	G	A	153197996	3	1	550	1	0	0	0	0	1	0	0	0	10188	1294	45	2	506	2	NAA10	23	153197996	Missense_Mutation	SNP	G	TCGA-BH-A0HF-01A-11W-A071-09	142257	153197996	2072564	890	48952										
SEMA6C	0	genome.wustl.edu	37	chr1	151111915	151111915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	ccttaccgtcagctttccccGtacagcacagttctccacat	5	17	2	0			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	1	151111915	151111915	G	A	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.340	p.R114W	0.908	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	270	0	0	221	53	19.27	-	-	-	A	151111915	G	A	151111915	3	1	551	1	0	0	0	0	1	0	0	0	14129	1144	40	1	2608	1	SEMA6C	1	151111915	Missense_Mutation	SNP	G	TCGA-BH-A0HI-01A-11D-A099-09		151111915	98138706	1	48953										
RYR2	0	genome.wustl.edu	37	chr1	237954734	237954734	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gtttttcaccctcagaactaTtttgctcgcaacttttacaa	4	11	2	1			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	1	237954734	237954734	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.13500	p.Y4500	1.000	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	425	0	0	242	101	29.45	-	-	-	C	237954734	T	C	237954734	2	2	551	1	0	0	0	0	0	0	0	1	13855	1500	52	5		5	RYR2	1	237954734	Silent	SNP	T	TCGA-BH-A0HI-01A-11D-A099-09	86842819	237954734	11295887	2	48954										
SMYD5	0	genome.wustl.edu	37	chr2	73448984	73448985	+	Frame_Shift_Del	DEL	TT	TT	-													0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	aggaccgttggatcagactcTtttcccagttttgtaacaaa							TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	2	73448984	73448985	TT	-	DEL	SMYD5	ENST00000389501	human	ensembl	69_37n	1	known	frame_shift_del	c.568_569	p.S191fs	1.000:1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632	176	0	0	177	24	11.94	-	-	-	-	73448985	TT	-	73448984	7	5	551	1	0	1	0	1	0	0	0	0	14914	1609	56	0	590	0	SMYD5	2	73448984	Frame_Shift_Del	DEL	TT	TCGA-BH-A0HI-01A-11D-A099-09		73448984	169750389	3	48955										
ZEB2	0	genome.wustl.edu	37	chr2	145158777	145158777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gctactcaccactgtgaattCgcaggtgttctttcagatgg	10	10	3	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	2	145158777	145158777	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	missense	c.905	p.R302Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	175	0	0	148	60	28.85	-	-	-	T	145158777	C	T	145158777	3	4	551	1	0	0	0	0	1	0	0	0	17720	884	31	1	2755	1	ZEB2	2	145158777	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09	71709793	145158777	98040596	4	48956										
TTN	0	genome.wustl.edu	37	chr2	179427389	179427389	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tagattttcaattctgaaagTagttttagtgcaattatttg	7	3	2	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	2	179427389	179427389	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.75766	p.T25256A	0.048	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	215	1	0.46	117	19	13.97	-	-	-	C	179427389	T	C	179427389	3	2	551	1	0	0	0	0	1	0	0	0	16832	1638	57	5	24657	5	TTN	2	179427389	Missense_Mutation	SNP	T	TCGA-BH-A0HI-01A-11D-A099-09	34268612	179427389	63771984	5	48957										
OR5H1	0	genome.wustl.edu	37	chr3	97851563	97851563	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tggaagaggaaaatgcaacaTtgctgacagagtttgttctc	11	6	1	3			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	3	97851563	97851563	T	C	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	silent	c.22	p.L8	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	80	0	0	63	8	11.27	-	-	-	C	97851563	T	C	97851563	2	2	551	1	0	0	0	0	0	0	0	1	11232	1490	52	5		5	OR5H1	3	97851563	Silent	SNP	T	TCGA-BH-A0HI-01A-11D-A099-09		97851563	100170867	6	48958										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	93	0	0	100	38	27.54	-	-	-	A	178936091	G	A	178936091	3	1	551	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A0HI-01A-11D-A099-09	81084528	178936091	19086339	7	48959										
PDE6B	0	genome.wustl.edu	37	chr4	658672	658672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	cccggtttgtgtctgcagggCcatgatgatgacagcctgcg	14	11	1	3			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	4	658672	658672	C	T	SNP	PDE6B	ENST00000496514	human	ensembl	69_37n	1	known	missense	c.2132	p.A711V	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256	63	0	0	48	9	15.79	-	-	-	T	658672	C	T	658672	3	4	551	1	0	0	0	0	1	0	0	0	11719	739	26	4	2202	4	PDE6B	4	658672	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		658672	190495604	8	48960										
RGMB	0	genome.wustl.edu	37	chr5	98115336	98115336	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	cagaaatgcaccacggacttCgtgtccctgacttctcacct	7	15	1	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	5	98115336	98115336	C	T	SNP	RGMB	ENST00000308234	human	ensembl	69_37n	1	known	silent	c.312	p.F104	0.908	pfam_RGM_N	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136	47	0	0	69	25	26.6	-	-	-	T	98115336	C	T	98115336	2	4	551	1	0	0	0	0	0	0	0	1	13364	883	31	1		1	RGMB	5	98115336	Silent	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		98115336	82799924	9	48961										
ZNF184	0	genome.wustl.edu	37	chr6	27419341	27419341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tgcacttatagggcttctccCcagtgtgaattcgttgatgc	10	10	1	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	6	27419341	27419341	C	T	SNP	ZNF184	ENST00000211936	human	ensembl	69_37n	-1	known	missense	c.1997	p.G666E	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654	193	0	0	160	78	32.77	-	-	-	T	27419341	C	T	27419341	3	4	551	1	0	0	0	0	1	0	0	0	17847	623	22	4	262	4	ZNF184	6	27419341	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		27419341	143695726	10	48962										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	27	0	0	39	6	13.33	-	-	-	-	150884268	AG	-	150884267	7	5	551	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-BH-A0HI-01A-11D-A099-09		150884267	8254396	11	48963										
SLC26A7	0	genome.wustl.edu	37	chr8	92406479	92406479	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tgttgtttgataacttggatCttccaacaatgccaccgctc	7	11	1	1			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	8	92406479	92406479	C	A	SNP	SLC26A7	ENST00000309536	human	ensembl	69_37n	1	known	missense	c.1969	p.L657I	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606	184	1	0.54	126	42	25	-	-	-	A	92406479	C	A	92406479	3	1	551	1	0	0	0	0	1	0	0	0	14611	913	32	2	2039	2	SLC26A7	8	92406479	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		92406479	53957543	12	48964										
TLR4	0	genome.wustl.edu	37	chr9	120474783	120474783	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gggagccttttctggactatCaagtttacagaagctggtgg	13	7	2	1			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	9	120474783	120474783	C	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.377	p.S126L	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	85	0	0	78	11	12.36	-	-	-	T	120474783	C	T	120474783	3	4	551	1	0	0	0	0	1	0	0	0	16048	838	29	2	387	2	TLR4	9	120474783	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		120474783	20738648	13	48965										
FAM129B	0	genome.wustl.edu	37	chr9	130289586	130289586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gttccccgagaagacgatgcGctcgtccagtggcacctgtg	13	13	0	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	9	130289586	130289586	G	A	SNP	FAM129B	ENST00000373312	human	ensembl	69_37n	-1	known	missense	c.202	p.R68C	0.948	pfscan_Pleckstrin_homology	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830	56	0	0	45	30	40	-	-	-	A	130289586	G	A	130289586	3	1	551	1	0	0	0	0	1	0	0	0	5477	1087	38	1	2086	1	FAM129B	9	130289586	Missense_Mutation	SNP	G	TCGA-BH-A0HI-01A-11D-A099-09	9814803	130289586	10923845	14	48966										
MYPN	0	genome.wustl.edu	37	chr10	69934047	69934047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	cttcccctccacgaacaccaCcgcagcaactgtggcccctt	6	20	0	0			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	10	69934047	69934047	C	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	missense	c.2198	p.T733I	0.004	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	102	0	0	89	47	34.56	-	-	-	T	69934047	C	T	69934047	3	4	551	1	0	0	0	0	1	0	0	0	10170	507	18	4	2236	4	MYPN	10	69934047	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		69934047	65600700	15	48967										
HSPA8	0	genome.wustl.edu	37	chr11	122930294	122930296	+	In_Frame_Del	DEL	AGG	AGG	-													0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tacgagtagaaccaccaaccAggacaatatcatgaatctgt							TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	11	122930294	122930296	AGG	-	DEL	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	in_frame_del	c.1007_1005	p.L336in_frame_del	1.000:0.975:0.988	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	72	0	0	51	20	28.17	-	-	-	-	122930296	AGG	-	122930294	7	5	551	1	0	1	0	1	0	0	0	0	7469	188	7	0	953	0	HSPA8	11	122930294	In_Frame_Del	DEL	AGG	TCGA-BH-A0HI-01A-11D-A099-09		122930294	12076222	16	48968										
VEZT	0	genome.wustl.edu	37	chr12	95645809	95645809	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	aaacagaaaaatgcacaacaGagggacaacaaaagcctcct	7	10	0	2			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	12	95645809	95645809	G	A	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	missense	c.130	p.E44K	0.975	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	134	0	0	116	24	17.14	-	-	-	A	95645809	G	A	95645809	3	1	551	1	0	0	0	0	1	0	0	0	17253	943	33	2	136	2	VEZT	12	95645809	Missense_Mutation	SNP	G	TCGA-BH-A0HI-01A-11D-A099-09		95645809	38206086	17	48969										
TRIP11	0	genome.wustl.edu	37	chr14	92460257	92460257	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	agaatacatagctttttcctCtaaagagaaaagaaagttaa	6	5	1	3			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	14	92460257	92460257	C	T	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	splice_site	c.5057-1	e15-1	1.000	-	-	-	no_errors	TRIP11	HGNC	ENSG00000100815	159	0	0	159	87	35.37	-	-	-	T	92460257	C	T	92460257	5	4	551	1	0	0	0	0	0	0	1	0	16651	927	32	2	911	2	TRIP11	14	92460257	Splice_Site	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		92460257	14889283	18	48970										
GINS2	0	genome.wustl.edu	37	chr16	85711840	85711843	+	Frame_Shift_Del	DEL	CTCT	CTCT	-													0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	agaagtcctgagactgagtaCtctccagaggctggaggttc							TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	CTCT	CTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	16	85711840	85711843	CTCT	-	DEL	GINS2	ENST00000253462	human	ensembl	69_37n	-1	known	frame_shift_del	c.536_533	p.E178fs	0.004:0.005:0.000:0.002	pirsf_GINS_Psf2_subgr	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	-	no_errors	GINS2	HGNC	ENSG00000131153	237	0	0	93	71	43.29	-	-	-	-	85711843	CTCT	-	85711840	7	5	551	1	0	1	0	1	0	0	0	0	6440	565	20	0	25	0	GINS2	16	85711840	Frame_Shift_Del	DEL	CTCT	TCGA-BH-A0HI-01A-11D-A099-09		85711840	4642913	19	48971										
MTMR4	0	genome.wustl.edu	37	chr17	56581178	56581178	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	aagatccatgttttcttcccCaagtgtgcatggagatgatg	10	8	1	3			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	17	56581178	56581178	C	G	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.1738	p.G580R	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	33	0	0	45	24	34.78	-	-	-	G	56581178	C	G	56581178	3	3	551	1	0	0	0	0	1	0	0	0	10018	594	21	4	1869	4	MTMR4	17	56581178	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		56581178	24614032	20	48972										
MAST1	0	genome.wustl.edu	37	chr19	12969490	12969490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	tcgccgagaacccgtttgtgGtcggcatgttctgctccttt	11	12	1	1			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	19	12969490	12969490	G	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.1303	p.V435I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	168	0	0	149	55	26.96	-	-	-	A	12969490	G	A	12969490	3	1	551	1	0	0	0	0	1	0	0	0	9395	1261	44	4	1349	4	MAST1	19	12969490	Missense_Mutation	SNP	G	TCGA-BH-A0HI-01A-11D-A099-09		12969490	46159493	21	48973										
SULF2	0	genome.wustl.edu	37	chr20	46307432	46307432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.477253117815372	1.76942355889724	0	1.9055330634278	0.0476190476190476	0.355507088331516	0	gtcctcaccgattcaccggcCgctccgtgtccagcagcttg	10	17	2	0			TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	507213d0-ef1c-400c-8724-24cd6a39feb8	f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34	20	46307432	46307432	C	T	SNP	SULF2	ENST00000359930	human	ensembl	69_37n	-1	known	missense	c.1181	p.R394Q	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562	79	0	0	52	23	30.67	-	-	-	T	46307432	C	T	46307432	3	4	551	1	0	0	0	0	1	0	0	0	15462	652	23	1	1487	1	SULF2	20	46307432	Missense_Mutation	SNP	C	TCGA-BH-A0HI-01A-11D-A099-09		46307432	16718088	22	48974										
CAMTA1	0	genome.wustl.edu	37	chr1	7723467	7723467	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cgccaaacaccgcatcatctCgcccaaggtggagccacgga	10	16	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	7723467	7723467	C	G	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.860	p.S287W	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	60	0	0	7	6	46.15	-	-	-	G	7723467	C	G	7723467	3	3	552	1	0	0	0	0	1	0	0	0	2638	893	31	3	894	3	CAMTA1	1	7723467	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		7723467	241527154	1	48975										
CNKSR1	0	genome.wustl.edu	37	chr1	26507066	26507066	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ggtctctgggacaccaggagCtcatcctgggcggggtggaa	17	10	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	26507066	26507066	C	G	SNP	CNKSR1	ENST00000374253	human	ensembl	69_37n	1	known	missense	c.175	p.L59V	1.000	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	102	0	0	52	7	11.48	-	-	-	G	26507066	C	G	26507066	3	3	552	1	0	0	0	0	1	0	0	0	3636	797	28	4	181	4	CNKSR1	1	26507066	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	18783599	26507066	222743555	2	48976										
AHDC1	0	genome.wustl.edu	37	chr1	27878126	27878126	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gccaaactgggtgaggagaaGaagctgtactgtaggtcgcc	15	8	0	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	27878126	27878126	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	silent	c.501	p.F167	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	92	0	0	16	5	23.81	-	-	-	A	27878126	G	A	27878126	2	1	552	1	0	0	0	0	0	0	0	1	412	933	33	2		2	AHDC1	1	27878126	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	1371060	27878126	221372495	3	48977										
SSBP3	0	genome.wustl.edu	37	chr1	54704821	54704821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cgttggaccggctgcctccaGgcggcactggattaatcatt	12	12	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	54704821	54704821	G	T	SNP	SSBP3	ENST00000371320	human	ensembl	69_37n	-1	known	missense	c.908	p.P303H	1.000	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216	28	0	0	13	6	31.58	-	-	-	T	54704821	G	T	54704821	3	4	552	1	0	0	0	0	1	0	0	0	15272	1000	35	4	278	4	SSBP3	1	54704821	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	26826695	54704821	194545800	4	48978										
KANK4	0	genome.wustl.edu	37	chr1	62738879	62738879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	atattgatggtatttacccaCtggcggggaggaggaggagg	17	5	0	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	62738879	62738879	C	T	SNP	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	missense	c.1897	p.V633M	0.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	30	0	0	29	11	27.5	-	-	-	T	62738879	C	T	62738879	3	4	552	1	0	0	0	0	1	0	0	0	8033	565	20	4	1122	4	KANK4	1	62738879	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	8034058	62738879	186511742	5	48979										
MAN1A2	0	genome.wustl.edu	37	chr1	117944862	117944862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gctgatcatgagaaggccttGgaagaagcaaaagaaaaatt	11	5	1	4			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	117944862	117944862	G	A	SNP	MAN1A2	ENST00000356554	human	ensembl	69_37n	1	known	silent	c.357	p.L119	0.990	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162	299	1	0.33	178	108	37.76	-	-	-	A	117944862	G	A	117944862	2	1	552	1	0	0	0	0	0	0	0	1	9282	1339	47	4		4	MAN1A2	1	117944862	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	55205983	117944862	131305759	6	48980										
TUFT1	0	genome.wustl.edu	37	chr1	151536442	151536442	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aagaatattaaccagctgaaGagtgaggtccagtacatcca	9	8	0	4			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	151536442	151536442	G	A	SNP	TUFT1	ENST00000538902	human	ensembl	69_37n	1	known	silent	c.357	p.K119	1.000	NULL	superfamily_Prefoldin	-	no_errors	TUFT1	HGNC	ENSG00000143367	108	0	0	178	33	15.57	-	-	-	A	151536442	G	A	151536442	2	1	552	1	0	0	0	0	0	0	0	1	16869	933	33	2		2	TUFT1	1	151536442	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	33591580	151536442	97714179	7	48981										
LCE2D	0	genome.wustl.edu	37	chr1	152636817	152636817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cctgagccaccacaggccccGtctcttccaccggcgccggc	10	21	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	152636817	152636817	G	A	SNP	LCE2D	ENST00000368784	human	ensembl	69_37n	1	known	missense	c.236	p.R79H	0.000	NULL	NULL	-	no_errors	LCE2D	HGNC	ENSG00000187223	119	0	0	181	36	16.51	-	-	-	A	152636817	G	A	152636817	3	1	552	1	0	0	0	0	1	0	0	0	8722	1145	40	1	238	1	LCE2D	1	152636817	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	1100375	152636817	96613804	8	48982										
KIF21B	0	genome.wustl.edu	37	chr1	200973964	200973964	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctgtccgcttcagccgctctGagccggccaggtccacaaag	11	16	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	200973964	200973964	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.830	p.S277L	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	51	0	0	52	14	21.21	-	-	-	A	200973964	G	A	200973964	3	1	552	1	0	0	0	0	1	0	0	0	8341	1294	45	2	4160	2	KIF21B	1	200973964	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	48337147	200973964	48276657	9	48983										
SRGAP2	0	genome.wustl.edu	37	chr1	206634388	206634388	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttcctgttttgcaggatattGaggcaacaatgaactcggcc	10	9	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	206634388	206634388	G	T	SNP	SRGAP2	ENST00000414007	human	ensembl	69_37n	1	known	nonsense	c.2419	p.E807*	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon	SRGAP2	HGNC	ENSG00000163486	60	0	0	107	25	18.94	-	-	-	T	206634388	G	T	206634388	4	4	552	1	0	0	0	0	0	1	0	0	15237	1291	45	2	2661	2	SRGAP2	1	206634388	Nonsense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	5660424	206634388	42616233	10	48984										
RASSF5	0	genome.wustl.edu	37	chr1	206730957	206730957	+	Frame_Shift_Del	DEL	A	A	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cagcctggacgaggaactggAagactgcttcttcactgcta							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	206730957	206730957	A	-	DEL	RASSF5	ENST00000304534	human	ensembl	69_37n	1	known	frame_shift_del	c.56	p.D20fs	0.992	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF5	HGNC	ENSG00000136653	31	0	0	36	10	21.74	-	-	-	-	206730957	A	-	206730957	7	5	552	1	0	1	0	1	0	0	0	0	13172	246	9	0	645	0	RASSF5	1	206730957	Frame_Shift_Del	DEL	A	TCGA-BH-A0HK-01A-11W-A071-09	96569	206730957	42519664	11	48985										
PROX1	0	genome.wustl.edu	37	chr1	214171121	214171121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gcctgcagtgctttggcgacGtcatcattccgaaccccctg	10	15	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	214171121	214171121	G	A	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.1243	p.V415I	1.000	pfam_Prox1	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	285	0	0	377	81	17.61	-	-	-	A	214171121	G	A	214171121	3	1	552	1	0	0	0	0	1	0	0	0	12641	1145	40	1	1245	1	PROX1	1	214171121	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	7440164	214171121	35079500	12	48986										
WNT3A	0	genome.wustl.edu	37	chr1	228210498	228210498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	agatcatgcccagcgtggccGagggcatcaagattggcatc	13	11	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	228210498	228210498	G	A	SNP	WNT3A	ENST00000366753	human	ensembl	69_37n	1	known	missense	c.202	p.E68K	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342	24	0	0	48	8	14.29	-	-	-	A	228210498	G	A	228210498	3	1	552	1	0	0	0	0	1	0	0	0	17486	1059	37	1	208	1	WNT3A	1	228210498	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	14039377	228210498	21040123	13	48987										
FMN2	0	genome.wustl.edu	37	chr1	240255687	240255687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ggggaaaggcgccggcggctCccgcgaagatgtactggatt	17	10	0	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	240255687	240255687	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.278	p.S93F	1.000	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	10	0	0	7	7	50	-	-	-	T	240255687	C	T	240255687	3	4	552	1	0	0	0	0	1	0	0	0	5996	855	30	2	280	2	FMN2	1	240255687	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	12045189	240255687	8994934	14	48988										
STAM2	0	genome.wustl.edu	37	chr2	152982824	152982824	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gagtacactggtgcttcattCaccaatttgttatatagttc	7	8	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	152982824	152982824	C	T	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	silent	c.1095	p.V365	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	74	0	0	27	9	25	-	-	-	T	152982824	C	T	152982824	2	4	552	1	0	0	0	0	0	0	0	1	15340	813	29	2		2	STAM2	2	152982824	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		152982824	90216549	15	48989										
FSIP2	0	genome.wustl.edu	37	chr2	186671695	186671695	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gcattaagataaaatctgcaGataaaatgccacctatgcat	6	8	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	186671695	186671695	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.17929	p.D5977N	0.004	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	163	0	0	117	75	39.06	-	-	-	A	186671695	G	A	186671695	3	1	552	1	0	0	0	0	1	0	0	0	6124	942	33	2	17995	2	FSIP2	2	186671695	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	33688871	186671695	56527678	16	48990										
COL3A1	0	genome.wustl.edu	37	chr2	189872623	189872623	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctttccagggccctgctggtCagcagggtgcaatcggcagt	14	12	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	189872623	189872623	C	T	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	nonsense	c.3376	p.Q1126*	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	68	0	0	54	43	44.33	-	-	-	T	189872623	C	T	189872623	4	4	552	1	0	0	0	0	0	1	0	0	3718	827	29	2	3558	2	COL3A1	2	189872623	Nonsense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	3200928	189872623	53326750	17	48991										
DNAH7	0	genome.wustl.edu	37	chr2	196801373	196801374	+	Frame_Shift_Ins	INS	-	-	A													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	caagaagttcatcattggacINSaaaaaaaagaatctggggaa							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	196801373	196801374	-	A	INS	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3222_3221	p.L1074fs	1.000:1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	230	0	0	132	58	30.53	-	-	-	A	196801374	-	A	196801373	7	5	552	1	0	1	1	0	0	0	0	0	4641	477	17	0	9036	0	DNAH7	2	196801373	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09	6928750	196801373	46398000	18	48992										
ECEL1	0	genome.wustl.edu	37	chr2	233347143	233347143	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctcactgtgggaagtcagggTcgtacagggtgggctgcagg	18	8	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	233347143	233347143	T	A	SNP	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	missense	c.1781	p.D594V	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	66	0	0	11	5	31.25	-	-	-	A	233347143	T	A	233347143	3	1	552	1	0	0	0	0	1	0	0	0	4926	1667	58	5	574	5	ECEL1	2	233347143	Missense_Mutation	SNP	T	TCGA-BH-A0HK-01A-11W-A071-09	36545770	233347143	9852230	19	48993										
UBP1	0	genome.wustl.edu	37	chr3	33434910	33434910	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	caagttttcgagcaacttctGaggcaatcatttcttccaag	7	10	3	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	33434910	33434910	G	A	SNP	UBP1	ENST00000283628	human	ensembl	69_37n	-1	known	missense	c.1427	p.S476L	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560	125	0	0	65	27	29.35	-	-	-	A	33434910	G	A	33434910	3	1	552	1	0	0	0	0	1	0	0	0	16992	1294	45	2	207	2	UBP1	3	33434910	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		33434910	164587520	20	48994										
GNL3	0	genome.wustl.edu	37	chr3	52724624	52724624	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tcagatctggtaccaaaggaGaatttggagagctggctaaa	12	6	2	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	52724624	52724624	G	A	SNP	GNL3	ENST00000418458	human	ensembl	69_37n	1	known	silent	c.558	p.E186	0.999	NULL	pfam_Gnl3_N_dom,pfam_GTP_binding_domain	-	no_errors	GNL3	HGNC	ENSG00000163938	292	1	0.34	107	57	34.76	-	-	-	A	52724624	G	A	52724624	2	1	552	1	0	0	0	0	0	0	0	1	6589	933	33	2		2	GNL3	3	52724624	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	19289714	52724624	145297806	21	48995										
GTPBP8	0	genome.wustl.edu	37	chr3	112710112	112710113	+	Frame_Shift_Ins	INS	-	-	CG													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aacatcttcacggccactgaINSacggaaccgcatcgactacg							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	112710112	112710113	-	CG	INS	GTPBP8	ENST00000383678	human	ensembl	69_37n	1	known	frame_shift_ins	c.266_267	p.E89fs	0.000:0.000	NULL	pfam_GTP_binding_domain,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,tigrfam_GTP-bd_ribosome_bio_YsxC	-	no_errors	GTPBP8	HGNC	ENSG00000163607	46	0	0	40	39	49.37	-	-	-	CG	112710113	-	CG	112710112	7	5	552	1	0	1	1	0	0	0	0	0	6935	246	9	0	268	0	GTPBP8	3	112710112	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09	59985488	112710112	85312318	22	48996										
IQCB1	0	genome.wustl.edu	37	chr3	121527844	121527844	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gaaaaagtgtagtaattcatCtttttcttcagccttaacat	5	7	4	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	121527844	121527844	C	G	SNP	IQCB1	ENST00000310864	human	ensembl	69_37n	-1	known	missense	c.406	p.D136H	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	55	0	0	49	18	26.87	-	-	-	G	121527844	C	G	121527844	3	3	552	1	0	0	0	0	1	0	0	0	7857	913	32	2	1430	2	IQCB1	3	121527844	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	8817732	121527844	76494586	23	48997										
ATP2C1	0	genome.wustl.edu	37	chr3	130714935	130714935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tataataacattaaaaatttCgttagattccagctgagcac	5	7	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	130714935	130714935	C	T	SNP	ATP2C1	ENST00000508660	human	ensembl	69_37n	1	putative	missense	c.659	p.S220L	1.000	tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP2C1	HGNC	ENSG00000017260	226	0	0	104	52	33.12	-	-	-	T	130714935	C	T	130714935	3	4	552	1	0	0	0	0	1	0	0	0	1147	883	31	1	2192	1	ATP2C1	3	130714935	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	9187091	130714935	67307495	24	48998										
HTR3E	0	genome.wustl.edu	37	chr3	183823927	183823927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tccctccaggtgtctacttcGccctgtgcctgtccctgatg	9	16	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	183823927	183823927	G	A	SNP	HTR3E	ENST00000335304	human	ensembl	69_37n	1	known	missense	c.982	p.A328T	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038	136	1	0.72	69	39	35.78	-	-	-	A	183823927	G	A	183823927	3	1	552	1	0	0	0	0	1	0	0	0	7502	1087	38	1	1008	1	HTR3E	3	183823927	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	53108992	183823927	14198503	25	48999										
ATP13A4	0	genome.wustl.edu	37	chr3	193132430	193132430	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	atgaagcctgcaatatgcatGgccaggctgagaagaatgtt	12	7	0	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	193132430	193132430	G	A	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	silent	c.2952	p.A984	0.836	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	78	0	0	65	8	10.96	-	-	-	A	193132430	G	A	193132430	2	1	552	1	0	0	0	0	0	0	0	1	1130	1335	47	4		4	ATP13A4	3	193132430	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	9308503	193132430	4890000	26	49000										
POLN	0	genome.wustl.edu	37	chr4	2172878	2172878	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ccgttctcctgcaacaaaatGagcttcttgctccaattcct	5	14	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	2172878	2172878	G	A	SNP	POLN	ENST00000382865	human	ensembl	69_37n	-1	known	missense	c.1405	p.H469Y	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	190	0	0	100	52	34.21	-	-	-	A	2172878	G	A	2172878	3	1	552	1	0	0	0	0	1	0	0	0	12281	1290	45	2	1357	2	POLN	4	2172878	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		2172878	188981398	27	49001										
LAP3	0	genome.wustl.edu	37	chr4	17585131	17585131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tgcaggcagattcaagacctGgagctctcgtctgtggaggt	14	9	3	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	17585131	17585131	G	A	SNP	LAP3	ENST00000509583	human	ensembl	69_37n	1	known	missense	c.268	p.G90R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LAP3	HGNC	ENSG00000002549	122	0	0	96	27	21.95	-	-	-	A	17585131	G	A	17585131	3	1	552	1	0	0	0	0	1	0	0	0	8677	1335	47	4	423	4	LAP3	4	17585131	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	15412253	17585131	173569145	28	49002										
FAT4	0	genome.wustl.edu	37	chr4	126337775	126337775	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aatgattacagctacagattCaggtaagtccattacaccct	6	10	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	126337775	126337775	C	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	nonsense	c.7016	p.S2339*	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	220	0	0	91	71	43.83	-	-	-	G	126337775	C	G	126337775	4	3	552	1	0	0	0	0	0	1	0	0	5738	838	29	2	7038	2	FAT4	4	126337775	Nonsense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	108752644	126337775	64816501	29	49003										
MYO10	0	genome.wustl.edu	37	chr5	16761623	16761623	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tctcgaaatgtatctctgttCttctccaagatacctcggac	6	12	4	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	16761623	16761623	C	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	silent	c.1689	p.K563	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	102	0	0	58	30	34.09	-	-	-	T	16761623	C	T	16761623	2	4	552	1	0	0	0	0	0	0	0	1	10134	912	32	2		2	MYO10	5	16761623	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		16761623	164153637	30	49004										
ITGA1	0	genome.wustl.edu	37	chr5	52216230	52216230	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gttttttctctggaactcaaGagagaaaggttcaaaggaac	10	6	3	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	52216230	52216230	G	C	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.2224	p.E742Q	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	115	0	0	62	47	43.12	-	-	-	C	52216230	G	C	52216230	3	2	552	1	0	0	0	0	1	0	0	0	7926	943	33	2	2290	2	ITGA1	5	52216230	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	35454607	52216230	128699030	31	49005										
ANKRD32	0	genome.wustl.edu	37	chr5	94030568	94030568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tacaacagaggaatgctaagGgagaattgcccttggattat	11	6	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	94030568	94030568	G	A	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	1	known	missense	c.2728	p.G910R	0.980	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	150	0	0	97	51	34.46	-	-	-	A	94030568	G	A	94030568	3	1	552	1	0	0	0	0	1	0	0	0	659	1233	43	4	2806	4	ANKRD32	5	94030568	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	41814338	94030568	86884692	32	49006										
SLIT3	0	genome.wustl.edu	37	chr5	168310287	168310287	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tacaggttcttcacatcggtGatgccgcggaacgccttcct	10	13	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	168310287	168310287	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	silent	c.468	p.I156	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	100	0	0	46	6	11.54	-	-	-	A	168310287	G	A	168310287	2	1	552	1	0	0	0	0	0	0	0	1	14830	1280	45	2		2	SLIT3	5	168310287	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	74279719	168310287	12604973	33	49007										
HMP19	0	genome.wustl.edu	37	chr5	173534476	173534476	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cagcagccgctgtcatccatGagcccaagccgcccaagacc	9	18	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	173534476	173534476	G	A	SNP	HMP19	ENST00000303177	human	ensembl	69_37n	1	known	missense	c.484	p.E162K	1.000	pfam_D1-dopamine_rcpt_interact,pirsf_D1-dopamine_rcpt_interact	pfam_D1-dopamine_rcpt_interact,pirsf_D1-dopamine_rcpt_interact	-	no_errors	HMP19	Clone_based_vega_gene	ENSG00000170091	83	0	0	20	16	44.44	-	-	-	A	173534476	G	A	173534476	3	1	552	1	0	0	0	0	1	0	0	0	7296	1291	45	2	498	2	HMP19	5	173534476	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	5224189	173534476	7380784	34	49008										
HIST1H3B	0	genome.wustl.edu	37	chr6	26031883	26031884	+	Frame_Shift_Del	DEL	CT	CT	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aaagtgactttacatttacgCtctttctccgcgaatgcggc							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	26031883	26031884	CT	-	DEL	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	frame_shift_del	c.406_405	p.R135fs	1.000:0.999	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	81	0	0	42	29	40.85	-	-	-	-	26031884	CT	-	26031883	7	5	552	1	0	1	0	1	0	0	0	0	7207	797	28	0	8	0	HIST1H3B	6	26031883	Frame_Shift_Del	DEL	CT	TCGA-BH-A0HK-01A-11W-A071-09		26031883	145083184	35	49009										
ZSCAN16	0	genome.wustl.edu	37	chr6	28093465	28093465	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	acaccaaggagcagattttaGacctgctggtgctagaacag	11	9	0	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	28093465	28093465	G	A	SNP	ZSCAN16	ENST00000340487	human	ensembl	69_37n	1	known	missense	c.244	p.D82N	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812	261	0	0	118	85	41.87	-	-	-	A	28093465	G	A	28093465	3	1	552	1	0	0	0	0	1	0	0	0	18321	942	33	2	246	2	ZSCAN16	6	28093465	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	2061582	28093465	143021602	36	49010										
GSTA1	0	genome.wustl.edu	37	chr6	52661025	52661025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	catagaggttgtatttgctgGcaatgtagttgagaatggct	13	4	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	52661025	52661025	G	A	SNP	GSTA1	ENST00000334575	human	ensembl	69_37n	-1	known	missense	c.227	p.A76V	0.984	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA1	HGNC	ENSG00000243955	386	0	0	134	91	40.27	-	-	-	A	52661025	G	A	52661025	3	1	552	1	0	0	0	0	1	0	0	0	6881	1203	42	4	457	4	GSTA1	6	52661025	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	24567560	52661025	118454042	37	49011										
TINAG	0	genome.wustl.edu	37	chr6	54173424	54173424	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tggagaagcagtatttatctCaaagagaagtggacctagag	12	5	1	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	54173424	54173424	C	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	nonsense	c.76	p.Q26*	0.004	NULL	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	589	0	0	348	188	35.07	-	-	-	T	54173424	C	T	54173424	4	4	552	1	0	0	0	0	0	1	0	0	16016	827	29	2	78	2	TINAG	6	54173424	Nonsense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	1512399	54173424	116941643	38	49012										
UTRN	0	genome.wustl.edu	37	chr6	144784000	144784000	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctctcacactcagagcttttGaggtaaatccagaggccact	8	12	2	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	144784000	144784000	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.3064	p.E1022K	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	131	0	0	68	44	39.29	-	-	-	A	144784000	G	A	144784000	3	1	552	1	0	0	0	0	1	0	0	0	17200	1291	45	2	3150	2	UTRN	6	144784000	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	90610576	144784000	26331067	39	49013										
PRSS55	0	genome.wustl.edu	37	chr8	10386965	10386966	+	Frame_Shift_Ins	INS	-	-	T													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ggtccccagctcacactggaINStgctgactaagtgtttcccc							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	10386965	10386966	-	T	INS	PRSS55	ENST00000518641	human	ensembl	69_37n	1	known	frame_shift_ins	c.44_45	p.A16fs	0.000:0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRSS55	HGNC	ENSG00000184647	115	0	0	41	5	10.87	-	-	-	T	10386966	-	T	10386965	7	5	552	1	0	1	1	0	0	0	0	0	12714	348	12	0		0	PRSS55	8	10386965	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09		10386965	135977057	40	49014										
ZBTB10	0	genome.wustl.edu	37	chr8	81399907	81399907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	atgggggaagcgtggaccttCccccagtggggcatgatgag	17	9	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	81399907	81399907	C	T	SNP	ZBTB10	ENST00000426744	human	ensembl	69_37n	1	known	missense	c.862	p.P288S	0.989	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189	41	0	0	17	12	41.38	-	-	-	T	81399907	C	T	81399907	3	4	552	1	0	0	0	0	1	0	0	0	17619	855	30	2	864	2	ZBTB10	8	81399907	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	71012942	81399907	64964115	41	49015										
ZFAND1	0	genome.wustl.edu	37	chr8	82629498	82629498	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	acatacctcaggacaaccatGagactccctgcttctgtgtt	7	13	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	82629498	82629498	G	A	SNP	ZFAND1	ENST00000220669	human	ensembl	69_37n	-1	known	missense	c.124	p.H42Y	1.000	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	-	no_errors	ZFAND1	HGNC	ENSG00000104231	170	0	0	103	47	31.33	-	-	-	A	82629498	G	A	82629498	3	1	552	1	0	0	0	0	1	0	0	0	17722	1290	45	2	754	2	ZFAND1	8	82629498	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	1229591	82629498	63734524	42	49016										
VPS13B	0	genome.wustl.edu	37	chr8	100205158	100205158	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	atatttgaacttccaaatctCacaattcaagctacaagagc	4	10	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	100205158	100205158	C	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.2388	p.L796	0.999	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	272	0	0	122	57	31.84	-	-	-	G	100205158	C	G	100205158	2	3	552	1	0	0	0	0	0	0	0	1	17287	813	29	2		2	VPS13B	8	100205158	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	17575660	100205158	46158864	43	49017										
UBR5	0	genome.wustl.edu	37	chr8	103274157	103274157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctttacctgtcctccaccttCttctttacacaggtcaattg	4	14	3	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	103274157	103274157	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.7828	p.E2610K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	267	0	0	123	41	25	-	-	-	T	103274157	C	T	103274157	3	4	552	1	0	0	0	0	1	0	0	0	17002	922	32	2	591	2	UBR5	8	103274157	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	3068999	103274157	43089865	44	49018										
FOXD4	0	genome.wustl.edu	37	chr9	117998	117998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctaggaactgctggctcgccGcctcctcctcgtcttcatct	8	17	3	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	117998	117998	G	T	SNP	FOXD4	ENST00000382500	human	ensembl	69_37n	-1	known	missense	c.122	p.A41E	0.002	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122	78	0	0	33	6	13.33	-	-	-	T	117998	G	T	117998	3	4	552	1	0	0	0	0	1	0	0	0	6045	1087	38	3	1201	3	FOXD4	9	117998	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		117998	141095433	45	49019										
MAMDC2	0	genome.wustl.edu	37	chr9	72723278	72723278	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctgtcagatcccagccagctGaacctctacatgagatttga	8	12	2	4			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	72723278	72723278	G	A	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	silent	c.300	p.L100	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	159	0	0	70	44	38.6	-	-	-	A	72723278	G	A	72723278	2	1	552	1	0	0	0	0	0	0	0	1	9274	1277	45	2		2	MAMDC2	9	72723278	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	72605280	72723278	68490153	46	49020										
TXN	0	genome.wustl.edu	37	chr9	113006463	113006463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	taattcattaatggtggcttCaagcttttccttattggctc	7	8	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	113006463	113006463	C	T	SNP	TXN	ENST00000374517	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TXN	HGNC	ENSG00000136810	42	0	0	17	9	34.62	-	-	-	T	113006463	C	T	113006463	3	4	552	1	0	0	0	0	1	0	0	0	16887	835	29	2	29	2	TXN	9	113006463	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	40283185	113006463	28206968	47	49021										
CSTF2T	0	genome.wustl.edu	37	chr10	53457893	53457893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	accaggaccctgaattccacCagtcatagggcctcttgaac	8	14	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	53457893	53457893	C	T	SNP	CSTF2T	ENST00000331173	human	ensembl	69_37n	-1	known	missense	c.1417	p.G473S	0.242	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	142	0	0	100	61	37.89	-	-	-	T	53457893	C	T	53457893	3	4	552	1	0	0	0	0	1	0	0	0	4017	594	21	4	437	4	CSTF2T	10	53457893	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		53457893	82076854	48	49022										
RNLS	0	genome.wustl.edu	37	chr10	90341439	90341439	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gagcttagaggcctcaaaacGccataggctaacagttcatc	9	11	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	90341439	90341439	G	A	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	silent	c.252	p.G84	0.002	NULL	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	64	0	0	24	43	64.18	-	-	-	A	90341439	G	A	90341439	2	1	552	1	0	0	0	0	0	0	0	1	13591	1074	38	1		1	RNLS	10	90341439	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	36883546	90341439	45193308	49	49023										
PI4K2A	0	genome.wustl.edu	37	chr10	99410715	99410715	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tagaggatcattgctgtcttCaaacccaagaatgaagagcc	9	9	3	4			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	99410715	99410715	C	T	SNP	PI4K2A	ENST00000370631	human	ensembl	69_37n	1	known	silent	c.453	p.F151	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	101	0	0	57	28	32.94	-	-	-	T	99410715	C	T	99410715	2	4	552	1	0	0	0	0	0	0	0	1	11945	825	29	2		2	PI4K2A	10	99410715	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	9069276	99410715	36124032	50	49024										
PDZD7	0	genome.wustl.edu	37	chr10	102783366	102783366	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cccacgcacaggccagcccgCtctgcaccacaggatgggag	12	17	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	102783366	102783366	C	G	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	missense	c.369	p.E123D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	35	0	0	19	6	24	-	-	-	G	102783366	C	G	102783366	3	3	552	1	0	0	0	0	1	0	0	0	11777	811	28	4	1212	4	PDZD7	10	102783366	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	3372651	102783366	32751381	51	49025										
COL17A1	0	genome.wustl.edu	37	chr10	105836073	105836073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tgataccttcatacgcatggCgggtaacgtgagttttcctt	10	9	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	105836073	105836073	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.317	p.R106H	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	151	1	0.65	81	45	35.71	-	-	-	T	105836073	C	T	105836073	3	4	552	1	0	0	0	0	1	0	0	0	3704	768	27	1	4384	1	COL17A1	10	105836073	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	3052707	105836073	29698674	52	49026										
C10orf120	0	genome.wustl.edu	37	chr10	124457516	124457516	+	Frame_Shift_Del	DEL	G	G	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttttttggttcttttgacttGaaaactacattcatttttat							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	124457516	124457516	G	-	DEL	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	frame_shift_del	c.741	p.F247fs	1.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	187	0	0	119	25	17.24	-	-	-	-	124457516	G	-	124457516	7	5	552	1	0	1	0	1	0	0	0	0	1600	1281	45	0	270	0	C10orf120	10	124457516	Frame_Shift_Del	DEL	G	TCGA-BH-A0HK-01A-11W-A071-09	18621443	124457516	11077231	53	49027										
C10orf120	0	genome.wustl.edu	37	chr10	124457606	124457606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttggcatcatcacaattatgGgtgtcatagttgtcttcctt	8	8	4	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	124457606	124457606	G	A	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	silent	c.651	p.T217	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	156	0	0	87	38	30.4	-	-	-	A	124457606	G	A	124457606	2	1	552	1	0	0	0	0	0	0	0	1	1600	1219	43	4		4	C10orf120	10	124457606	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	90	124457606	11077141	54	49028										
MGMT	0	genome.wustl.edu	37	chr10	131557478	131557478	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cctttcagagtcgttcaccaGacaggtgttatggaagctgc	11	10	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	131557478	131557478	G	A	SNP	MGMT	ENST00000306010	human	ensembl	69_37n	1	known	missense	c.380	p.R127K	0.812	pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430	62	0	0	26	9	25.71	-	-	-	A	131557478	G	A	131557478	3	1	552	1	0	0	0	0	1	0	0	0	9628	942	33	2	394	2	MGMT	10	131557478	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	7099872	131557478	3977269	55	49029										
AMBRA1	0	genome.wustl.edu	37	chr11	46567261	46567261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gcaatcagcaggagctgagcCgtagggtggaaagccaggga	17	8	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	46567261	46567261	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	silent	c.444	p.T148	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	107	0	0	57	42	42	-	-	-	T	46567261	C	T	46567261	2	4	552	1	0	0	0	0	0	0	0	1	565	639	23	1		1	AMBRA1	11	46567261	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		46567261	88439255	56	49030										
MTA2	0	genome.wustl.edu	37	chr11	62363528	62363528	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttctgaaatccagccccattCatgccaggttttgaacccac	6	14	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	62363528	62363528	C	T	SNP	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	missense	c.1068	p.M356I	1.000	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	66	0	0	69	36	34.29	-	-	-	T	62363528	C	T	62363528	3	4	552	1	0	0	0	0	1	0	0	0	9981	826	29	2	966	2	MTA2	11	62363528	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	15796267	62363528	72642988	57	49031										
CDC42BPG	0	genome.wustl.edu	37	chr11	64597214	64597214	+	Frame_Shift_Del	DEL	C	C	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	catagccggtcgcccagcagCcccaggctctgcacagtggc							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	64597214	64597214	C	-	DEL	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	frame_shift_del	c.3696	p.L1233fs	0.211	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	8	0	0	4	3	42.86	-	-	-	-	64597214	C	-	64597214	7	5	552	1	0	1	0	1	0	0	0	0	3103	726	26	0	991	0	CDC42BPG	11	64597214	Frame_Shift_Del	DEL	C	TCGA-BH-A0HK-01A-11W-A071-09	2233686	64597214	70409302	58	49032										
SLCO2B1	0	genome.wustl.edu	37	chr11	74880255	74880255	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttcaaggcttccctgtgcctGcccacaacctcggccccagc	8	19	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	74880255	74880255	G	T	SNP	SLCO2B1	ENST00000289575	human	ensembl	69_37n	1	known	silent	c.486	p.L162	0.136	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491	29	0	0	2	11	84.62	-	-	-	T	74880255	G	T	74880255	2	4	552	1	0	0	0	0	0	0	0	1	14816	1306	46	4		4	SLCO2B1	11	74880255	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	10283041	74880255	60126261	59	49033										
MLL2	0	genome.wustl.edu	37	chr12	49428419	49428419	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tcactgctaggtccccccgaGagcctctgggctagcagaga	12	14	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	49428419	49428419	G	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	silent	c.10386	p.L3462	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	50	0	0	21	13	38.24	-	-	-	A	49428419	G	A	49428419	2	1	552	1	0	0	0	0	0	0	0	1	9692	929	33	2		2	MLL2	12	49428419	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		49428419	84423476	60	49034										
HOXC6	0	genome.wustl.edu	37	chr12	54422370	54422370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cgggggccaggacgtcctccCcaacgtcgccctcaattcca	10	18	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	54422370	54422370	C	T	SNP	HOXC6	ENST00000243108	human	ensembl	69_37n	1	known	missense	c.65	p.P22L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXC6	HGNC	ENSG00000197757	114	0	0	64	11	14.67	-	-	-	T	54422370	C	T	54422370	3	4	552	1	0	0	0	0	1	0	0	0	7366	623	22	4	67	4	HOXC6	12	54422370	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	4993951	54422370	79429525	61	49035										
CCDC63	0	genome.wustl.edu	37	chr12	111319049	111319049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	agctcaagtccttcctgctcGtcaagctgaatgatcgcaat	8	12	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	111319049	111319049	G	A	SNP	CCDC63	ENST00000308208	human	ensembl	69_37n	1	known	missense	c.802	p.V268I	0.201	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	56	0	0	30	19	38.78	-	-	-	A	111319049	G	A	111319049	3	1	552	1	0	0	0	0	1	0	0	0	2861	1145	40	1	824	1	CCDC63	12	111319049	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	56896679	111319049	22532846	62	49036										
CCDC62	0	genome.wustl.edu	37	chr12	123285673	123285673	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tttctaatgccaccatagcaGagacatgtgtttatcagacc	7	10	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	123285673	123285673	G	C	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	missense	c.980	p.R327T	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	116	1	0.85	62	27	30.34	-	-	-	C	123285673	G	C	123285673	3	2	552	1	0	0	0	0	1	0	0	0	2860	942	33	2	1014	2	CCDC62	12	123285673	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	11966624	123285673	10566222	63	49037										
CCDC62	0	genome.wustl.edu	37	chr12	123285827	123285827	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tcttgcgatgaatgcaaagaGaagaaacaacagatcgatac	9	7	1	4			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	123285827	123285827	G	C	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	missense	c.1134	p.E378D	0.351	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	126	0	0	68	35	33.98	-	-	-	C	123285827	G	C	123285827	3	2	552	1	0	0	0	0	1	0	0	0	2860	933	33	2	1168	2	CCDC62	12	123285827	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	154	123285827	10566068	64	49038										
TOX4	0	genome.wustl.edu	37	chr14	21964747	21964747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cctctagaaattcaaacacaGtggtgtttgtgaaatagtcc	8	8	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	21964747	21964747	G	A	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	missense	c.1849	p.V617M	0.998	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	96	0	0	58	41	41.41	-	-	-	A	21964747	G	A	21964747	3	1	552	1	0	0	0	0	1	0	0	0	16476	1029	36	4	1883	4	TOX4	14	21964747	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		21964747	85384793	65	49039										
FOXA1	0	genome.wustl.edu	37	chr14	38061461	38061461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	atggccatggtgatgagcgaGatgtacgagtagggcggctt	17	6	0	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	38061461	38061461	G	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.528	p.I176M	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	29	0	0	2	7	77.78	-	-	-	C	38061461	G	C	38061461	3	2	552	1	0	0	0	0	1	0	0	0	6035	932	33	2	894	2	FOXA1	14	38061461	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	16096714	38061461	69288079	66	49040										
SYNE2	0	genome.wustl.edu	37	chr14	64457239	64457239	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gagtcctttcaacatgttctCacaactgggcttcaggcaaa	8	11	3	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	64457239	64457239	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.2424	p.L808	0.094	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	321	0	0	127	66	34.2	-	-	-	T	64457239	C	T	64457239	2	4	552	1	0	0	0	0	0	0	0	1	15538	813	29	2		2	SYNE2	14	64457239	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	26395778	64457239	42892301	67	49041										
NRXN3	0	genome.wustl.edu	37	chr14	79111725	79111725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aatggaaaattcaacgacaaCgcctggcatgatgtcaaagt	9	8	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	79111725	79111725	C	T	SNP	NRXN3	ENST00000553363	human	ensembl	69_37n	1	novel	missense	c.313	p.R105C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRXN3	HGNC	ENSG00000021645	91	0	0	47	14	22.58	-	-	-	T	79111725	C	T	79111725	3	4	552	1	0	0	0	0	1	0	0	0	10740	551	19	1		1	NRXN3	14	79111725	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	14654486	79111725	28237815	68	49042										
AHNAK2	0	genome.wustl.edu	37	chr14	105420827	105420827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tctgaggttgaggaacttccGcctcctctggctgcccggcc	12	15	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	105420827	105420827	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.961	p.R321W	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	14	0	0	10	7	38.89	-	-	-	A	105420827	G	A	105420827	3	1	552	1	0	0	0	0	1	0	0	0	415	1086	38	1	16430	1	AHNAK2	14	105420827	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	26309102	105420827	1928713	69	49043										
CASC4	0	genome.wustl.edu	37	chr15	44581304	44581304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ggtgctgctggtggtgatcgTcgtcctcgccttcaactact	12	12	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	15	44581304	44581304	T	C	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.77	p.V26A	0.988	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	15	0	0	22	14	37.84	-	-	-	C	44581304	T	C	44581304	3	2	552	1	0	0	0	0	1	0	0	0	2687	1667	58	5	79	5	CASC4	15	44581304	Missense_Mutation	SNP	T	TCGA-BH-A0HK-01A-11W-A071-09		44581304	57950088	70	49044										
RHCG	0	genome.wustl.edu	37	chr15	90020416	90020416	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cagtccccgttgaaaccttgAaagtcaaaggaatggacaag	10	9	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	90020416	90020416	A	T	SNP	RHCG	ENST00000268122	human	ensembl	69_37n	-1	known	missense	c.1134	p.F378L	0.404	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519	85	0	0	28	14	33.33	-	-	-	T	90020416	A	T	90020416	3	4	552	1	0	0	0	0	1	0	0	0	13410	243	9	5	317	5	RHCG	15	90020416	Missense_Mutation	SNP	A	TCGA-BH-A0HK-01A-11W-A071-09	45439112	90020416	12510976	71	49045										
RNPS1	0	genome.wustl.edu	37	chr16	2313111	2313111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	actcacttggagcgggagcgCctcctgttgtcgtgtctgcg	14	12	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	2313111	2313111	C	T	SNP	RNPS1	ENST00000301730	human	ensembl	69_37n	-1	known	silent	c.405	p.R135	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPS1	HGNC	ENSG00000205937	25	0	0	14	9	39.13	-	-	-	T	2313111	C	T	2313111	2	4	552	1	0	0	0	0	0	0	0	1	13597	738	26	4		4	RNPS1	16	2313111	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		2313111	88041642	72	49046										
TFAP4	0	genome.wustl.edu	37	chr16	4310234	4310234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ggggtggtgggtgggggccgGagggggcagaagctgcaaga	25	5	0	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	4310234	4310234	G	A	SNP	TFAP4	ENST00000204517	human	ensembl	69_37n	-1	known	missense	c.679	p.P227S	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFAP4	HGNC	ENSG00000090447	21	0	0	16	4	20	-	-	-	A	4310234	G	A	4310234	3	1	552	1	0	0	0	0	1	0	0	0	15887	1174	41	2	345	2	TFAP4	16	4310234	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	1997123	4310234	86044519	73	49047										
ITGAX	0	genome.wustl.edu	37	chr16	31371302	31371302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cactttcgaggaattcaggcGcagctcaaaccccctcagcc	8	16	3	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	31371302	31371302	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.623	p.R208H	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	58	0	0	23	17	42.5	-	-	-	A	31371302	G	A	31371302	3	1	552	1	0	0	0	0	1	0	0	0	7943	1087	38	1	649	1	ITGAX	16	31371302	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	27061068	31371302	58983451	74	49048										
ZDHHC1	0	genome.wustl.edu	37	chr16	67432162	67432162	+	Frame_Shift_Del	DEL	C	C	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tgactcgagctccctgtgaaCccccttggcctcctgtggtg							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	67432162	67432162	C	-	DEL	ZDHHC1	ENST00000348579	human	ensembl	69_37n	-1	known	frame_shift_del	c.880	p.V294fs	0.878	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714	49	0	0	4	2	33.33	-	-	-	-	67432162	C	-	67432162	7	5	552	1	0	1	0	1	0	0	0	0	17696	507	18	0	593	0	ZDHHC1	16	67432162	Frame_Shift_Del	DEL	C	TCGA-BH-A0HK-01A-11W-A071-09	36060860	67432162	22922591	75	49049										
PELP1	0	genome.wustl.edu	37	chr17	4594696	4594696	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gttttgatggaactgagacgTgcattactgagactcaccaa	10	8	1	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	4594696	4594696	T	A	SNP	PELP1	ENST00000570571	human	ensembl	69_37n	-1	novel	missense	c.220	p.T74S	0.955	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PELP1	HGNC	ENSG00000141456	190	0	0	56	82	59.42	-	-	-	A	4594696	T	A	4594696	3	1	552	1	0	0	0	0	1	0	0	0	11798	1683	59	5	3165	5	PELP1	17	4594696	Missense_Mutation	SNP	T	TCGA-BH-A0HK-01A-11W-A071-09		4594696	76600514	76	49050										
PIK3R5	0	genome.wustl.edu	37	chr17	8792106	8792107	+	Frame_Shift_Ins	INS	-	-	G													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gtgcccgtcagtttccaagtINScctcctccacctcctcctcc							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	8792106	8792107	-	G	INS	PIK3R5	ENST00000447110	human	ensembl	69_37n	-1	known	frame_shift_ins	c.998_997	p.D333fs	0.958:0.524	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	34	0	0	5	3	37.5	-	-	-	G	8792107	-	G	8792106	7	5	552	1	0	1	1	0	0	0	0	0	11996	1667	58	0	1684	0	PIK3R5	17	8792106	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09	4197410	8792106	72403104	77	49051										
TEKT3	0	genome.wustl.edu	37	chr17	15234729	15234729	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	acgcttggggaattggaggcGactttgtagtatgtgctggg	17	5	0	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	15234729	15234729	G	A	SNP	TEKT3	ENST00000338696	human	ensembl	69_37n	-1	known	silent	c.174	p.V58	0.005	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409	246	0	0	135	17	11.18	-	-	-	A	15234729	G	A	15234729	2	1	552	1	0	0	0	0	0	0	0	1	15849	1045	37	1		1	TEKT3	17	15234729	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	6442623	15234729	65960481	78	49052										
C17orf53	0	genome.wustl.edu	37	chr17	42230004	42230004	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ccctctgctctgtggtaccaGattgttgctagttcccaggc	10	13	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	42230004	42230004	G	C	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	splice_site	c.1309-1	e5-1	0.875	-	-	-	no_errors	C17orf53	HGNC	ENSG00000125319	78	0	0	47	24	33.8	-	-	-	C	42230004	G	C	42230004	5	2	552	1	0	0	0	0	0	0	1	0	1877	956	33	2	1326	2	C17orf53	17	42230004	Splice_Site	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	26995275	42230004	38965206	79	49053										
PDK2	0	genome.wustl.edu	37	chr17	48174889	48174889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gatcaacctgcttcccgaccGagtgctgagcacaccctccg	9	17	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	48174889	48174889	G	A	SNP	PDK2	ENST00000503176	human	ensembl	69_37n	1	known	missense	c.221	p.R74Q	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK2	HGNC	ENSG00000005882	44	0	0	12	13	52	-	-	-	A	48174889	G	A	48174889	3	1	552	1	0	0	0	0	1	0	0	0	11749	1058	37	1	227	1	PDK2	17	48174889	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	5944885	48174889	33020321	80	49054										
CACNA1G	0	genome.wustl.edu	37	chr17	48650015	48650015	+	Frame_Shift_Del	DEL	A	A	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	agaacggcatgcggtcctgcAgaagcgtgcccacgctgcgc							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	48650015	48650015	A	-	DEL	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	frame_shift_del	c.847	p.R283fs	0.981	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	21	0	0	12	14	53.85	-	-	-	-	48650015	A	-	48650015	7	5	552	1	0	1	0	1	0	0	0	0	2569	180	7	0	869	0	CACNA1G	17	48650015	Frame_Shift_Del	DEL	A	TCGA-BH-A0HK-01A-11W-A071-09	475126	48650015	32545195	81	49055										
MC4R	0	genome.wustl.edu	37	chr18	58039364	58039364	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tacatgggtgaatgcagattCttgttcttggctattgccac	10	8	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	18	58039364	58039364	C	T	SNP	MC4R	ENST00000299766	human	ensembl	69_37n	-1	known	silent	c.219	p.K73	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603	194	0	0	99	79	44.38	-	-	-	T	58039364	C	T	58039364	2	4	552	1	0	0	0	0	0	0	0	1	9437	912	32	2		2	MC4R	18	58039364	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		58039364	20037884	82	49056										
RHPN2	0	genome.wustl.edu	37	chr19	33470935	33470935	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctgtctgagttgagaaggctGaaaggggagggcagcttctt	16	6	2	3			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	33470935	33470935	G	A	SNP	RHPN2	ENST00000254260	human	ensembl	69_37n	-1	known	silent	c.2028	p.F676	1.000	NULL	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941	173	0	0	83	51	38.06	-	-	-	A	33470935	G	A	33470935	2	1	552	1	0	0	0	0	0	0	0	1	13435	1281	45	2		2	RHPN2	19	33470935	Silent	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		33470935	25658048	83	49057										
EIF3K	0	genome.wustl.edu	37	chr19	39110987	39110987	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tctcctttaggtacaatcctGagaacctggccaccctggag	9	13	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	39110987	39110987	G	C	SNP	EIF3K	ENST00000248342	human	ensembl	69_37n	1	known	missense	c.70	p.E24Q	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25,superfamily_ARM-type_fold	pfam_COP9_signalosome_subunit_CSN8,pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25,superfamily_ARM-type_fold	-	no_errors	EIF3K	HGNC	ENSG00000178982	79	0	0	29	13	30.95	-	-	-	C	39110987	G	C	39110987	3	2	552	1	0	0	0	0	1	0	0	0	5058	1291	45	2	76	2	EIF3K	19	39110987	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	5640052	39110987	20017996	84	49058										
NLRP7	0	genome.wustl.edu	37	chr19	55450858	55450859	+	Frame_Shift_Ins	INS	-	-	T													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ccaggaacagacggaggtcgINSgactcctgcaccccgagcct							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	55450858	55450859	-	T	INS	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1413_1412	p.D472fs	0.000:0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	57	0	0	30	44	59.46	-	-	-	T	55450859	-	T	55450858	7	5	552	1	0	1	1	0	0	0	0	0	10554	1103	39	0	1816	0	NLRP7	19	55450858	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09	16339871	55450858	3678125	85	49059										
SNX5	0	genome.wustl.edu	37	chr20	17934762	17934762	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ttcgtaggagcaggtggaatCtgcagcagaggcaggaactc	15	8	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	20	17934762	17934762	C	A	SNP	SNX5	ENST00000377759	human	ensembl	69_37n	-1	known	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors	SNX5	HGNC	ENSG00000089006	251	0	0	173	75	30.12	-	-	-	A	17934762	C	A	17934762	5	1	552	1	0	0	0	0	0	0	1	0	14994	927	32	2	987	2	SNX5	20	17934762	Splice_Site	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		17934762	45090758	86	49060										
ZNFX1	0	genome.wustl.edu	37	chr20	47864113	47864113	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gagcagggaagggtggctttCagagcttccatcttttcctg	13	9	2	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	20	47864113	47864113	C	T	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.5448	p.L1816	0.997	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	137	0	0	98	11	10.09	-	-	-	T	47864113	C	T	47864113	2	4	552	1	0	0	0	0	0	0	0	1	18298	813	29	2		2	ZNFX1	20	47864113	Silent	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	29929351	47864113	15161407	87	49061										
EWSR1	0	genome.wustl.edu	37	chr22	29693913	29693913	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tctgccaccccgtgagggcaGaggcatgccaccaccactcc	10	18	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	22	29693913	29693913	G	A	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	1	known	missense	c.1406	p.R469K	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	116	0	0	88	23	20.72	-	-	-	A	29693913	G	A	29693913	3	1	552	1	0	0	0	0	1	0	0	0	5332	942	33	2	1558	2	EWSR1	22	29693913	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09		29693913	21610653	88	49062										
MYH9	0	genome.wustl.edu	37	chr22	36689510	36689512	+	In_Frame_Del	DEL	CTC	CTC	-													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	aggctcagcttctgccggttCtcctcctgcagcagctccta							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	22	36689510	36689512	CTC	-	DEL	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	in_frame_del	c.3960_3958	p.E1320in_frame_del	1.000:1.000:1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	57	0	0	11	5	29.41	-	-	-	-	36689512	CTC	-	36689510	7	5	552	1	0	1	0	1	0	0	0	0	10114	912	32	0	1970	0	MYH9	22	36689510	In_Frame_Del	DEL	CTC	TCGA-BH-A0HK-01A-11W-A071-09	6995597	36689510	14615056	89	49063										
RABL2B	0	genome.wustl.edu	37	chr22	51207261	51207261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tcgatgctgctgctctgttcCtggtctggcacgtcctcctc	10	15	2	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	22	51207261	51207261	C	G	SNP	RABL2B	ENST00000354869	human	ensembl	69_37n	-1	known	missense	c.633	p.Q211H	0.770	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RABL2B	HGNC	ENSG00000079974	67	0	0	53	12	18.46	-	-	-	G	51207261	C	G	51207261	3	3	552	1	0	0	0	0	1	0	0	0	13054	680	24	4	60	4	RABL2B	22	51207261	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	14517751	51207261	97305	90	49064										
GRPR	0	genome.wustl.edu	37	chrX	16142101	16142101	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ctctaaatgactgtttccttCtgaacttggaggtggaccat	9	9	2	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	16142101	16142101	C	G	SNP	GRPR	ENST00000380289	human	ensembl	69_37n	1	known	missense	c.25	p.L9V	0.030	prints_Gastrin_pep_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010	569	0	0	206	112	35.22	-	-	-	G	16142101	C	G	16142101	3	3	552	1	0	0	0	0	1	0	0	0	6859	912	32	2	27	2	GRPR	23	16142101	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09		16142101	139128459	91	49065										
BRWD3	0	genome.wustl.edu	37	chrX	79980464	79980464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	attccgaattttggtcccccGgtcaaggtcccaaataaaaa	7	11	1	0			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	79980464	79980464	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.1489	p.R497W	0.985	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	90	0	0	53	32	37.65	-	-	-	A	79980464	G	A	79980464	3	1	552	1	0	0	0	0	1	0	0	0	1534	1115	39	1	4027	1	BRWD3	23	79980464	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	63838363	79980464	75290096	92	49066										
ATG4A	0	genome.wustl.edu	37	chrX	107381041	107381041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	cttccatttctagaaaaaatGtgccgtgtccttcccttgag	7	11	1	2			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	107381041	107381041	G	A	SNP	ATG4A	ENST00000372232	human	ensembl	69_37n	1	known	missense	c.555	p.M185I	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	307	0	0	89	59	39.86	-	-	-	A	107381041	G	A	107381041	3	1	552	1	0	0	0	0	1	0	0	0	1100	1377	48	4	585	4	ATG4A	23	107381041	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	27400577	107381041	47889519	93	49067										
IRS4	0	genome.wustl.edu	37	chrX	107976114	107976114	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	gggcagaggcggagtcaaatCcagcagctgcggctgctgcg	17	11	1	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	107976114	107976114	C	G	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.3461	p.G1154A	0.101	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	74	0	0	37	15	28.85	-	-	-	G	107976114	C	G	107976114	3	3	552	1	0	0	0	0	1	0	0	0	7896	855	30	2	316	2	IRS4	23	107976114	Missense_Mutation	SNP	C	TCGA-BH-A0HK-01A-11W-A071-09	595073	107976114	47294446	94	49068										
KIAA1210	0	genome.wustl.edu	37	chrX	118284464	118284464	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	tcggtccctggggcccaggtGagccaggtaggggtgccggc	19	12	0	1			TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	118284464	118284464	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.79	p.H27Y	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	96	0	0	24	14	36.84	-	-	-	A	118284464	G	A	118284464	3	1	552	1	0	0	0	0	1	0	0	0	8266	1290	45	2	5106	2	KIAA1210	23	118284464	Missense_Mutation	SNP	G	TCGA-BH-A0HK-01A-11W-A071-09	10308350	118284464	36986096	95	49069										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.40625	39	3.96003500505751e-13	3.78520625889047	4.78812415654521	3.53022713236808	5.2250287748994e-05	0.00196541466994293	29	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	41	0	0	60	10	14.29	-	-	-	AA	135960147	-	AA	135960146	7	5	552	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-BH-A0HK-01A-11W-A071-09	17675682	135960146	19310414	96	49070										
RPS6KA1	0	genome.wustl.edu	37	chr1	26885310	26885311	+	Frame_Shift_Ins	INS	-	-	C													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cgtacagattccccaggcatINScccccccagcgctggggccc							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	26885310	26885311	-	C	INS	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	frame_shift_ins	c.1124_1125	p.S378fs	1.000:0.993	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	26	0	0	12	3	20	-	-	-	C	26885311	-	C	26885310	7	5	553	1	0	1	1	0	0	0	0	0	13736	1435	50	0	1290	0	RPS6KA1	1	26885310	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09		26885310	222365311	1	49071										
ABL2	0	genome.wustl.edu	37	chr1	179078567	179078567	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cactagaggcctgtgcacctCtgatgaaccctgatgagaaa	10	11	1	5			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	179078567	179078567	C	T	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.1835	p.R612K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	52	0	0	16	12	42.86	-	-	-	T	179078567	C	T	179078567	3	4	553	1	0	0	0	0	1	0	0	0	93	913	32	2	1717	2	ABL2	1	179078567	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09	152193257	179078567	70172054	2	49072										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220325077	220325077	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	accagcagctgagaggcaagGacctctttgtcatgaacctg	11	11	2	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	1	220325077	220325077	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	silent	c.3897	p.V1299	0.956	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	99	0	0	65	50	43.48	-	-	-	C	220325077	G	C	220325077	2	2	553	1	0	0	0	0	0	0	0	1	13019	1161	41	2		2	RAB3GAP2	1	220325077	Silent	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	41246510	220325077	28925544	3	49073										
ITSN2	0	genome.wustl.edu	37	chr2	24531572	24531572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gctgaggaactgcccactctGaggtcccagtcttgggtgag	14	11	2	3			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	24531572	24531572	G	A	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.707	p.S236L	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	114	0	0	93	66	41.25	-	-	-	A	24531572	G	A	24531572	3	1	553	1	0	0	0	0	1	0	0	0	7981	1294	45	2	4569	2	ITSN2	2	24531572	Missense_Mutation	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09		24531572	218667801	4	49074										
TTN	0	genome.wustl.edu	37	chr2	179499272	179499272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	accatataacatttgcctctCgggtgaggacacattcgaat	8	10	1	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	179499272	179499272	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34532	p.R11511Q	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0	18	23	56.1	-	-	-	T	179499272	C	T	179499272	3	4	553	1	0	0	0	0	1	0	0	0	16832	884	31	1	65989	1	TTN	2	179499272	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09	154967700	179499272	63700101	5	49075										
IQCA1	0	genome.wustl.edu	37	chr2	237308121	237308121	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ttggtgacattttccattttTcgtcttcttcctgttcaaag	6	9	3	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	2	237308121	237308121	T	G	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	missense	c.1145	p.E382A	0.289	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	244	0	0	91	74	44.85	-	-	-	G	237308121	T	G	237308121	3	3	553	1	0	0	0	0	1	0	0	0	7856	1783	62	5	1367	5	IQCA1	2	237308121	Missense_Mutation	SNP	T	TCGA-BH-A0HL-01A-11W-A050-09	57808849	237308121	5891252	6	49076										
DNASE1L3	0	genome.wustl.edu	37	chr3	58190568	58190568	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	tgcgtctccatcctgatagtCatggtagtgataactcctct	8	11	3	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	3	58190568	58190568	C	T	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	missense	c.361	p.D121N	0.983	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	126	0	0	83	34	29.06	-	-	-	T	58190568	C	T	58190568	3	4	553	1	0	0	0	0	1	0	0	0	4698	826	29	2	576	2	DNASE1L3	3	58190568	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		58190568	139831862	7	49077										
RICTOR	0	genome.wustl.edu	37	chr5	38952359	38952359	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gttgactccgagttcaaactTagagtgcttgggatagatga	12	6	1	4			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	5	38952359	38952359	T	C	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.3066	p.L1022	0.123	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	117	0	0	65	46	41.44	-	-	-	C	38952359	T	C	38952359	2	2	553	1	0	0	0	0	0	0	0	1	13442	1741	61	5		5	RICTOR	5	38952359	Silent	SNP	T	TCGA-BH-A0HL-01A-11W-A050-09		38952359	141962901	8	49078										
RREB1	0	genome.wustl.edu	37	chr6	7247180	7247181	+	Frame_Shift_Ins	INS	-	-	C													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cccctgaacaggaggagaagINSccccccgagaccccggcaga							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	7247180	7247181	-	C	INS	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	frame_shift_ins	c.4497_4498	p.E1501fs	0.080:0.159	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	12	0	0	13	2	13.33	-	-	-	C	7247181	-	C	7247180	7	5	553	1	0	1	1	0	0	0	0	0	13765	962	34	0	4531	0	RREB1	6	7247180	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09		7247180	163867887	9	49079										
SPACA1	0	genome.wustl.edu	37	chr6	88769255	88769255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ctttcgagtgtgacacactgGataataatgaaatagtagca	9	6	0	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	88769255	88769255	G	T	SNP	SPACA1	ENST00000237201	human	ensembl	69_37n	1	known	missense	c.559	p.D187Y	0.764	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	105	0	0	60	38	38.78	-	-	-	T	88769255	G	T	88769255	3	4	553	1	0	0	0	0	1	0	0	0	15061	1174	41	2	577	2	SPACA1	6	88769255	Missense_Mutation	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	81522075	88769255	82345812	10	49080										
SOBP	0	genome.wustl.edu	37	chr6	107955025	107955025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ccaaagccagggccctggccCgtcggcgtccaccaccgtct	11	19	1	0			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	6	107955025	107955025	C	T	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	1	known	missense	c.977	p.P326L	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	51	0	0	22	29	56.86	-	-	-	T	107955025	C	T	107955025	3	4	553	1	0	0	0	0	1	0	0	0	15001	652	23	1	999	1	SOBP	6	107955025	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09	19185770	107955025	63160042	11	49081										
WBSCR22	0	genome.wustl.edu	37	chr7	73107983	73107983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ctgcttgttttctgggccttCgacctttataccagaggtga	10	10	1	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	7	73107983	73107983	C	T	SNP	WBSCR22	ENST00000265758	human	ensembl	69_37n	1	known	missense	c.626	p.S209L	0.768	pfam_Unchr_MeTrfase_Williams-Beuren	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462	622	1	0.16	242	129	34.77	-	-	-	T	73107983	C	T	73107983	3	4	553	1	0	0	0	0	1	0	0	0	17362	893	31	1	660	1	WBSCR22	7	73107983	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		73107983	86030680	12	49082										
DMTF1	0	genome.wustl.edu	37	chr7	86811354	86811354	+	Frame_Shift_Del	DEL	T	T	-													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	aaaaaggcaattgctgcctgTttttttttcacccacagaca							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	7	86811354	86811354	T	-	DEL	DMTF1	ENST00000394702	human	ensembl	69_37n	1	known	frame_shift_del	c.732	p.F247fs	1.000	NULL	NULL	-	no_errors	DMTF1	HGNC	ENSG00000135164	8	0	0	5	3	37.5	-	-	-	-	86811354	T	-	86811354	7	5	553	1	0	1	0	1	0	0	0	0	4628	1740	60	0		0	DMTF1	7	86811354	Frame_Shift_Del	DEL	T	TCGA-BH-A0HL-01A-11W-A050-09	13703371	86811354	72327309	13	49083										
IKBKB	0	genome.wustl.edu	37	chr8	42178341	42178342	+	Frame_Shift_Ins	INS	-	-	G													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	agccccatgggccggaagcaINSggggggaacgctggacgacc							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	8	42178341	42178342	-	G	INS	IKBKB	ENST00000520810	human	ensembl	69_37n	1	known	frame_shift_ins	c.1667_1668	p.T559fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	55	0	0	24	4	14.29	-	-	-	G	42178342	-	G	42178341	7	5	553	1	0	1	1	0	0	0	0	0	7665	188	7	0	1725	0	IKBKB	8	42178341	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09		42178341	104185681	14	49084										
GALNT12	0	genome.wustl.edu	37	chr9	101589095	101589095	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cccaaggtgcgcctgatccgCgccaacaagagagagggcct	13	14	0	3			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	9	101589095	101589095	C	T	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	silent	c.603	p.R201	0.133	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	93	0	0	136	94	40.87	-	-	-	T	101589095	C	T	101589095	2	4	553	1	0	0	0	0	0	0	0	1	6260	755	27	1		1	GALNT12	9	101589095	Silent	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		101589095	39624336	15	49085										
COL5A1	0	genome.wustl.edu	37	chr9	137591855	137591855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	tacaacgagcagggtatccaGcagattgggctggagctggg	16	8	0	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	9	137591855	137591855	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	silent	c.378	p.Q126	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	16	0	0	6	4	40	-	-	-	A	137591855	G	A	137591855	2	1	553	1	0	0	0	0	0	0	0	1	3726	962	34	4		4	COL5A1	9	137591855	Silent	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	36002760	137591855	3621576	16	49086										
MUC5B	0	genome.wustl.edu	37	chr11	1269750	1269750	+	Frame_Shift_Del	DEL	C	C	-													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	acagtcaccccctcctccagCccagggacggcacgcacgcc							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	11	1269750	1269750	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	frame_shift_del	c.11649	p.P3884fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	60	0	0	17	2	10.53	-	-	-	-	1269750	C	-	1269750	7	5	553	1	0	1	0	1	0	0	0	0	10051	738	26	0	11771	0	MUC5B	11	1269750	Frame_Shift_Del	DEL	C	TCGA-BH-A0HL-01A-11W-A050-09		1269750	133736766	17	49087										
RTF1	0	genome.wustl.edu	37	chr15	41770786	41770788	+	In_Frame_Del	DEL	TTA	TTA	-													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	aaaccaacagatggatccctTtactcggcggcagtgcaagc							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	15	41770786	41770788	TTA	-	DEL	RTF1	ENST00000389629	human	ensembl	69_37n	1	known	in_frame_del	c.1781_1783	p.FT594in_frame_delS	1.000:0.972:1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	123	0	0	148	354	61.89	-	-	-	-	41770788	TTA	-	41770786	7	5	553	1	0	1	0	1	0	0	0	0	13807	1841	64	0	1839	0	RTF1	15	41770786	In_Frame_Del	DEL	TTA	TCGA-BH-A0HL-01A-11W-A050-09		41770786	60760606	18	49088			1	86		2	2	24	N	TTA_A	2.451777e-05
RTF1	0	genome.wustl.edu	37	chr15	41770809	41770809	+	Frame_Shift_Del	DEL	A	A	-													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ctcggcggcagtgcaagcctAccatcgtttctaatgtgagt							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	15	41770809	41770809	A	-	DEL	RTF1	ENST00000389629	human	ensembl	69_37n	1	known	frame_shift_del	c.1804	p.T602fs	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	123	0	0	142	256	64.16	-	-	-	-	41770809	A	-	41770809	7	5	553	1	0	1	0	1	0	0	0	0	13807	391	14	0	1862	0	RTF1	15	41770809	Frame_Shift_Del	DEL	A	TCGA-BH-A0HL-01A-11W-A050-09	23	41770809	60760583	19	49089			1	86		2	2	24	N	TTA_A	2.451777e-05
CIRH1A	0	genome.wustl.edu	37	chr16	69184739	69184739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ctgacacccacttagtctttCgtcctctcatggagaaggtg	9	12	2	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	16	69184739	69184739	C	T	SNP	CIRH1A	ENST00000314423	human	ensembl	69_37n	1	known	missense	c.934	p.R312C	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	115	0	0	51	26	33.77	-	-	-	T	69184739	C	T	69184739	3	4	553	1	0	0	0	0	1	0	0	0	3463	884	31	1	960	1	CIRH1A	16	69184739	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		69184739	21170014	20	49090										
RAI1	0	genome.wustl.edu	37	chr17	17697697	17697697	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ccccagagcagcataaaagcCagcactgcagccccgaaggg	11	15	0	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	17	17697697	17697697	C	T	SNP	RAI1	ENST00000353383	human	ensembl	69_37n	1	known	nonsense	c.1435	p.Q479*	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	9	0	0	9	7	43.75	-	-	-	T	17697697	C	T	17697697	4	4	553	1	0	0	0	0	0	1	0	0	13090	595	21	4	1437	4	RAI1	17	17697697	Nonsense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		17697697	63497513	21	49091										
IFI35	0	genome.wustl.edu	37	chr17	41164295	41164295	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gggactcccccaaagacaagGtaaggtgggagatctggtgt	15	8	1	2			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	17	41164295	41164295	G	A	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	splice_site	c.120+1	e2+1	0.992	-	-	-	no_errors	IFI35	HGNC	ENSG00000068079	93	0	0	56	27	32.53	-	-	-	A	41164295	G	A	41164295	5	1	553	1	0	0	0	0	0	0	1	0	7570	1275	44	4	127	4	IFI35	17	41164295	Splice_Site	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	23466598	41164295	40030915	22	49092										
AFG3L2	0	genome.wustl.edu	37	chr18	12329635	12329635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cttgttccagtccttaaggcCttctggaagtgaggtgtcct	11	10	1	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	18	12329635	12329635	C	T	SNP	AFG3L2	ENST00000269143	human	ensembl	69_37n	-1	known	missense	c.2323	p.G775S	1.000	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385	171	0	0	49	30	37.97	-	-	-	T	12329635	C	T	12329635	3	4	553	1	0	0	0	0	1	0	0	0	360	681	24	4	74	4	AFG3L2	18	12329635	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		12329635	65747613	23	49093										
NEDD4L	0	genome.wustl.edu	37	chr18	55990551	55990551	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gatgaagaaaacagtgaccaGagggatgacatggaggtacg	15	5	0	5			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	18	55990551	55990551	G	A	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	silent	c.498	p.Q166	0.998	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	165	1	0.6	89	56	38.62	-	-	-	A	55990551	G	A	55990551	2	1	553	1	0	0	0	0	0	0	0	1	10383	933	33	2		2	NEDD4L	18	55990551	Silent	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	43660916	55990551	22086697	24	49094										
PIP5K1C	0	genome.wustl.edu	37	chr19	3633459	3633460	+	Frame_Shift_Ins	INS	-	-	G													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	cgctctcgccgtcggaggccINSgggggggcctgggcgctata							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	3633459	3633460	-	G	INS	PIP5K1C	ENST00000335312	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1980_1979	p.A661fs	0.922:0.997	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	8	0	0	4	2	33.33	-	-	-	G	3633460	-	G	3633459	7	5	553	1	0	1	1	0	0	0	0	0	12015	639	23	0	34	0	PIP5K1C	19	3633459	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09		3633459	55495524	25	49095										
TMIGD2	0	genome.wustl.edu	37	chr19	4292606	4292606	+	Frame_Shift_Del	DEL	C	C	-													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ctgggatctctcactcctctCccactttggggaaccctttt							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	4292606	4292606	C	-	DEL	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	frame_shift_del	c.839	p.G280fs	0.002	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	31	0	0	10	2	16.67	-	-	-	-	4292606	C	-	4292606	7	5	553	1	0	1	0	1	0	0	0	0	16326	855	30	0	13	0	TMIGD2	19	4292606	Frame_Shift_Del	DEL	C	TCGA-BH-A0HL-01A-11W-A050-09	659147	4292606	54836377	26	49096										
ARHGEF18	0	genome.wustl.edu	37	chr19	7504982	7504982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ccgggtcccggagccccgggCgcgaacatggggaatgcgca	17	14	0	0			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	7504982	7504982	C	T	SNP	ARHGEF18	ENST00000359920	human	ensembl	69_37n	1	known	silent	c.156	p.G52	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	9	0	0	15	16	51.61	-	-	-	T	7504982	C	T	7504982	2	4	553	1	0	0	0	0	0	0	0	1	903	755	27	1		1	ARHGEF18	19	7504982	Silent	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09	3212376	7504982	51624001	27	49097										
PRAM1	0	genome.wustl.edu	37	chr19	8564392	8564393	+	Frame_Shift_Ins	INS	-	-	C													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gcttcttggggaggtcagtgINSacctcaggcggcgggggctt							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	8564392	8564393	-	C	INS	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.300_299	p.T101fs	0.001:0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	18	0	0	4	2	33.33	-	-	-	C	8564393	-	C	8564392	7	5	553	1	0	1	1	0	0	0	0	0	12500	1277	45	0	1745	0	PRAM1	19	8564392	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09	1059410	8564392	50564591	28	49098	415	2								
PRAM1	0	genome.wustl.edu	37	chr19	8564394	8564395	+	Frame_Shift_Ins	INS	-	-	CAAA													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ttcttggggaggtcagtgacINSctcaggcggcgggggcttct							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	8564394	8564395	-	CAAA	INS	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	frame_shift_ins	c.298_297	p.V99fs	0.000:0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	18	0	0	4	2	33.33	-	-	-	CAAA	8564395	-	CAAA	8564394	7	5	553	1	0	1	1	0	0	0	0	0	12500	507	18	0	1747	0	PRAM1	19	8564394	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09	2	8564394	50564589	29	49099	415	2								
GYS1	0	genome.wustl.edu	37	chr19	49472669	49472669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	tggtggaggaggtgcaggacGctcggcgcggccactctggt	19	10	1	0			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	19	49472669	49472669	G	A	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.2090	p.A697V	0.993	NULL	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	18	0	0	10	8	44.44	-	-	-	A	49472669	G	A	49472669	3	1	553	1	0	0	0	0	1	0	0	0	6963	1087	38	1	127	1	GYS1	19	49472669	Missense_Mutation	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	40908275	49472669	9656314	30	49100										
FAM47C	0	genome.wustl.edu	37	chrX	37027222	37027222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	agactggagtgtcccatctcCgcccagagcctcccaagact	9	16	1	3			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	37027222	37027222	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.739	p.R247C	0.090	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	162	1	0.61	24	13	35.14	-	-	-	T	37027222	C	T	37027222	3	4	553	1	0	0	0	0	1	0	0	0	5617	652	23	1	741	1	FAM47C	23	37027222	Missense_Mutation	SNP	C	TCGA-BH-A0HL-01A-11W-A050-09		37027222	118243338	31	49101										
PIM2	0	genome.wustl.edu	37	chrX	48772372	48772372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gagtttggcacagccacggcGtaggtctatcaggatgttct	13	9	3	0			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	48772372	48772372	G	A	SNP	PIM2	ENST00000376509	human	ensembl	69_37n	-1	known	missense	c.520	p.R174C	0.121	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM2	HGNC	ENSG00000102096	56	0	0	94	60	38.96	-	-	-	A	48772372	G	A	48772372	3	1	553	1	0	0	0	0	1	0	0	0	12002	1145	40	1	427	1	PIM2	23	48772372	Missense_Mutation	SNP	G	TCGA-BH-A0HL-01A-11W-A050-09	11745150	48772372	106498188	32	49102										
ZCCHC5	0	genome.wustl.edu	37	chrX	77913883	77913883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	gaatttcattctccaatttcAgaacaatataggaggctgct	7	8	3	1			TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	77913883	77913883	A	C	SNP	ZCCHC5	ENST00000321110	human	ensembl	69_37n	-1	known	missense	c.35	p.L12R	0.999	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300	66	0	0	41	38	48.1	-	-	-	C	77913883	A	C	77913883	3	2	553	1	0	0	0	0	1	0	0	0	17687	188	7	5	1396	5	ZCCHC5	23	77913883	Missense_Mutation	SNP	A	TCGA-BH-A0HL-01A-11W-A050-09	29141511	77913883	77356677	33	49103										
PRRG3	0	genome.wustl.edu	37	chrX	150869296	150869297	+	Frame_Shift_Ins	INS	-	-	G													0.121212121212121	4	0.553664374396628	1.59150326797386	0	1.68512110726644	0.0285714285714286	0.251737451737452	0	ggtggtgctggggcccagtcINSgggggggcaggaccacagtc							TCGA-BH-A0HL-01A-11W-A050-09	TCGA-BH-A0HL-10A-11W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fd1db26-79e0-4018-8548-8fd20a96c479	f3a79920-cdfb-4dc7-b10b-9c143fd3d274	X	150869296	150869297	-	G	INS	PRRG3	ENST00000370353	human	ensembl	69_37n	1	known	frame_shift_ins	c.487_488	p.R166fs	0.000:0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032	48	0	0	31	5	13.89	-	-	-	G	150869297	-	G	150869296	7	5	553	1	0	1	1	0	0	0	0	0	12687	875	31	0	497	0	PRRG3	23	150869296	Frame_Shift_Ins	INS	-	TCGA-BH-A0HL-01A-11W-A050-09	72955413	150869296	4401264	34	49104										
GNB1	0	genome.wustl.edu	37	chr1	1720602	1720602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	cagaggtgatcccgcagatgAtgttgtcatgggagtaagtc	14	7	1	4			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	1	1720602	1720602	A	G	SNP	GNB1	ENST00000378606	human	ensembl	69_37n	-1	known	missense	c.806	p.I269T	1.000	pirsf_Guanine_nucleotide-bd_bsu,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1	HGNC	ENSG00000078369	97	0	0	30	8	21.05	-	-	-	G	1720602	A	G	1720602	3	3	554	1	0	0	0	0	1	0	0	0	6567	333	12	5	224	5	GNB1	1	1720602	Missense_Mutation	SNP	A	TCGA-BH-A0HN-01A-11D-A099-09		1720602	247530019	1	49105										
COL16A1	0	genome.wustl.edu	37	chr1	32124115	32124115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	gccagggtgtccaggggggcCgggctggcctgggaggcctg	22	11	0	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	1	32124115	32124115	C	T	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.3994	p.G1332S	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	18	0	0	6	6	50	-	-	-	T	32124115	C	T	32124115	3	4	554	1	0	0	0	0	1	0	0	0	3703	652	23	1	852	1	COL16A1	1	32124115	Missense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09	30403513	32124115	217126506	2	49106										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	53	69	56.56	-	-	-	A	178921553	T	A	178921553	3	1	554	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-BH-A0HN-01A-11D-A099-09		178921553	19100877	3	49107										
SGCB	0	genome.wustl.edu	37	chr4	52899712	52899712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	cttcatcaatcggaatgtatCcagctttaaagttactgttg	7	8	2	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	52899712	52899712	C	A	SNP	SGCB	ENST00000381431	human	ensembl	69_37n	-1	known	missense	c.128	p.G43V	1.000	NULL	pfam_Sarcoglycan	-	no_errors	SGCB	HGNC	ENSG00000163069	311	0	0	140	85	37.78	-	-	-	A	52899712	C	A	52899712	3	1	554	1	0	0	0	0	1	0	0	0	14288	855	30	2	848	2	SGCB	4	52899712	Missense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09		52899712	138254564	4	49108										
BMP2K	0	genome.wustl.edu	37	chr4	79780777	79780777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	tccggaacatagacctgataTatttcaagtgtcatattttg	7	7	2	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	79780777	79780777	T	C	SNP	BMP2K	ENST00000335016	human	ensembl	69_37n	1	known	missense	c.923	p.I308T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	206	0	0	66	37	35.92	-	-	-	C	79780777	T	C	79780777	3	2	554	1	0	0	0	0	1	0	0	0	1465	1406	49	5	953	5	BMP2K	4	79780777	Missense_Mutation	SNP	T	TCGA-BH-A0HN-01A-11D-A099-09	26881065	79780777	111373499	5	49109										
C4orf36	0	genome.wustl.edu	37	chr4	87809322	87809322	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	aatggtggtacattttgtgaGctgcacagaaccaccaaatg	10	8	0	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	87809322	87809322	G	C	SNP	C4orf36	ENST00000295898	human	ensembl	69_37n	-1	known	missense	c.172	p.L58V	0.023	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633	162	0	0	64	43	40.19	-	-	-	C	87809322	G	C	87809322	3	2	554	1	0	0	0	0	1	0	0	0	2287	971	34	4	189	4	C4orf36	4	87809322	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	8028545	87809322	103344954	6	49110										
ANK2	0	genome.wustl.edu	37	chr4	114158316	114158316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	cagaatgaccacaatgctgaCgtacaatccaaggtacttaa	7	10	0	3			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	114158316	114158316	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.657	p.D219	0.994	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	64	0	0	11	19	63.33	-	-	-	T	114158316	C	T	114158316	2	4	554	1	0	0	0	0	0	0	0	1	621	535	19	1		1	ANK2	4	114158316	Silent	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09	26348994	114158316	76995960	7	49111										
MDN1	0	genome.wustl.edu	37	chr6	90402199	90402199	+	Frame_Shift_Del	DEL	T	T	-													0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	agagctgcagggccctctggTccaactctcccttgcataac							TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	6	90402199	90402199	T	-	DEL	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	frame_shift_del	c.10550	p.D3517fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	27	0	0	8	2	20	-	-	-	-	90402199	T	-	90402199	7	5	554	1	0	1	0	1	0	0	0	0	9486	1667	58	0	6400	0	MDN1	6	90402199	Frame_Shift_Del	DEL	T	TCGA-BH-A0HN-01A-11D-A099-09		90402199	80712868	8	49112										
C7orf57	0	genome.wustl.edu	37	chr7	48086112	48086112	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	atgaagaatttaaccccgatCaagccaatggtagctatgca	8	9	1	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	48086112	48086112	C	G	SNP	C7orf57	ENST00000348904	human	ensembl	69_37n	1	known	missense	c.406	p.Q136E	0.024	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746	76	0	0	28	40	58.82	-	-	-	G	48086112	C	G	48086112	3	3	554	1	0	0	0	0	1	0	0	0	2427	827	29	2	420	2	C7orf57	7	48086112	Missense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09		48086112	111052551	9	49113										
MLL3	0	genome.wustl.edu	37	chr7	151962208	151962208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	tatatccaggcacattccatGatagtgctgaccacaagtag	8	10	0	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	151962208	151962208	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.1099	p.H367Y	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	435	0	0	176	69	28.16	-	-	-	A	151962208	G	A	151962208	3	1	554	1	0	0	0	0	1	0	0	0	9693	1290	45	2	13844	2	MLL3	7	151962208	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	103876096	151962208	7176455	10	49114										
ABCA1	0	genome.wustl.edu	37	chr9	107568529	107568529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	gaaagtgactcacttgtggaGgaggcagcccccctgcccct	12	14	1	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	107568529	107568529	G	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.4457	p.P1486L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	79	0	0	17	30	63.83	-	-	-	A	107568529	G	A	107568529	3	1	554	1	0	0	0	0	1	0	0	0	28	1000	35	4	2408	4	ABCA1	9	107568529	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09		107568529	33644902	11	49115										
SVEP1	0	genome.wustl.edu	37	chr9	113169227	113169227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	acatctgacaggcacacagtCgggagtggctccactccaac	10	14	1	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	113169227	113169227	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.8653	p.D2885N	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	29	0	0	18	13	41.94	-	-	-	T	113169227	C	T	113169227	3	4	554	1	0	0	0	0	1	0	0	0	15511	884	31	1	2106	1	SVEP1	9	113169227	Missense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09	5600698	113169227	28044204	12	49116										
LPAR1	0	genome.wustl.edu	37	chr9	113637890	113637890	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	atggggttcatggcagagttGaattcagcaaggagaaggaa	15	4	2	3			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	113637890	113637890	G	A	SNP	LPAR1	ENST00000538760	human	ensembl	69_37n	-1	known	silent	c.909	p.F303	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121	139	0	0	44	67	60.36	-	-	-	A	113637890	G	A	113637890	2	1	554	1	0	0	0	0	0	0	0	1	8970	1281	45	2		2	LPAR1	9	113637890	Silent	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	468663	113637890	27575541	13	49117										
OPTN	0	genome.wustl.edu	37	chr10	13166055	13166055	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ctctgtttaaggagcttcaaGaggctcatacaaaactcagc	8	10	4	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	10	13166055	13166055	G	A	SNP	OPTN	ENST00000263036	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	0.994	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	117	0	0	38	25	39.68	-	-	-	A	13166055	G	A	13166055	3	1	554	1	0	0	0	0	1	0	0	0	10962	943	33	2	969	2	OPTN	10	13166055	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09		13166055	122368692	14	49118										
DLG5	0	genome.wustl.edu	37	chr10	79567705	79567705	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	cacgtccaggctgccatactGccagggatgggggtggatgc	16	11	0	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	10	79567705	79567705	G	A	SNP	DLG5	ENST00000484525	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	DLG5	HGNC	ENSG00000151208	35	0	0	6	7	53.85	-	-	-	A	79567705	G	A	79567705	1	1	554	0	1	0	0	0	0	0	0	0	4594	1334	46	4		4	DLG5	10	79567705	RNA	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	66401650	79567705	55967042	15	49119										
GRID1	0	genome.wustl.edu	37	chr10	87362239	87362239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	gggccctgatgagagtgtccGgctggtgccatggctgctct	16	11	1	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	10	87362239	87362239	G	A	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.2821	p.R941W	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	49	0	0	5	4	44.44	-	-	-	A	87362239	G	A	87362239	3	1	554	1	0	0	0	0	1	0	0	0	6822	1115	39	1	212	1	GRID1	10	87362239	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	7794534	87362239	48172508	16	49120										
SLC39A13	0	genome.wustl.edu	37	chr11	47436878	47436878	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	cttctgctctgtgcgggcatCgtggtaatggtgctgttctc	13	10	3	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	47436878	47436878	C	T	SNP	SLC39A13	ENST00000362021	human	ensembl	69_37n	1	known	silent	c.1080	p.I360	0.477	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915	91	0	0	22	13	37.14	-	-	-	T	47436878	C	T	47436878	2	4	554	1	0	0	0	0	0	0	0	1	14705	874	31	1		1	SLC39A13	11	47436878	Silent	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09		47436878	87569638	17	49121										
CARNS1	0	genome.wustl.edu	37	chr11	67187071	67187073	+	In_Frame_Del	DEL	GGA	GGA	-													0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ctggcgctgctggagaagctGgaggaggaggagagtgtcct							TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	67187071	67187073	GGA	-	DEL	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	in_frame_del	c.966_968	p.E326in_frame_del	1.000:1.000:1.000	NULL	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	48	0	0	13	2	13.33	-	-	-	-	67187073	GGA	-	67187071	7	5	554	1	0	1	0	1	0	0	0	0	2681	1335	47	0	984	0	CARNS1	11	67187071	In_Frame_Del	DEL	GGA	TCGA-BH-A0HN-01A-11D-A099-09	19750193	67187071	67819445	18	49122										
AMOTL1	0	genome.wustl.edu	37	chr11	94554978	94554978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	tactacgacaatgccgacaaGctccacaaggtgcgtgactt	9	12	0	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	94554978	94554978	G	T	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.1404	p.K468N	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	52	0	0	8	6	42.86	-	-	-	T	94554978	G	T	94554978	3	4	554	1	0	0	0	0	1	0	0	0	583	962	34	4	1418	4	AMOTL1	11	94554978	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	27367907	94554978	40451538	19	49123										
GLB1L3	0	genome.wustl.edu	37	chr11	134147635	134147635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ccctctggagctgaagaatcGatctgtgggacttggaactg	13	9	2	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	134147635	134147635	G	A	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	1	known	missense	c.191	p.R64Q	0.011	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	112	0	0	4	63	92.65	-	-	-	A	134147635	G	A	134147635	3	1	554	1	0	0	0	0	1	0	0	0	6482	1058	37	1	201	1	GLB1L3	11	134147635	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	39592657	134147635	858881	20	49124										
TIMM22	0	genome.wustl.edu	37	chr17	900500	900500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	tgggtgacaagcgtcagcccCggctcctggagcctgggagc	16	13	1	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	17	900500	900500	C	T	SNP	TIMM22	ENST00000327158	human	ensembl	69_37n	1	known	missense	c.118	p.R40W	0.898	NULL	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370	26	0	0	2	9	81.82	-	-	-	T	900500	C	T	900500	3	4	554	1	0	0	0	0	1	0	0	0	16005	643	23	1	120	1	TIMM22	17	900500	Missense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09		900500	80294710	21	49125										
C17orf53	0	genome.wustl.edu	37	chr17	42225492	42225492	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ctaaggcctgtctctacttcCagcagctggattggcaatca	9	12	2	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	17	42225492	42225492	C	T	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	silent	c.321	p.S107	0.005	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319	47	0	0	17	7	29.17	-	-	-	T	42225492	C	T	42225492	2	4	554	1	0	0	0	0	0	0	0	1	1877	581	21	4		4	C17orf53	17	42225492	Silent	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09	41324992	42225492	38969718	22	49126										
GIPC3	0	genome.wustl.edu	37	chr19	3586586	3586586	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	acttcatctttgcccacgtgCgaggcgagaccaaggaggtg	13	11	2	1			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	19	3586586	3586586	C	T	SNP	GIPC3	ENST00000322315	human	ensembl	69_37n	1	known	nonsense	c.319	p.R107*	0.990	superfamily_PDZ,pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855	43	0	0	19	14	42.42	-	-	-	T	3586586	C	T	3586586	4	4	554	1	0	0	0	0	0	1	0	0	6446	760	27	1	325	1	GIPC3	19	3586586	Nonsense_Mutation	SNP	C	TCGA-BH-A0HN-01A-11D-A099-09		3586586	55542397	23	49127										
TSKS	0	genome.wustl.edu	37	chr19	50251415	50251415	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	ccagattctcgctcagcacaGaacactcgctctggagcatg	9	14	3	2			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	19	50251415	50251415	G	A	SNP	TSKS	ENST00000246801	human	ensembl	69_37n	-1	known	missense	c.506	p.S169F	0.829	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467	162	0	0	44	55	55.56	-	-	-	A	50251415	G	A	50251415	3	1	554	1	0	0	0	0	1	0	0	0	16722	942	33	2	1304	2	TSKS	19	50251415	Missense_Mutation	SNP	G	TCGA-BH-A0HN-01A-11D-A099-09	46664829	50251415	8877568	24	49128										
ATP7A	0	genome.wustl.edu	37	chrX	77268400	77268400	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.210746859800055	2.2922502334267	3.8968253968254	2.07830687830688	0.206349206349206	0.776190476190475	0	tcggaggctggtacttctacAttcaggcttataaagcactg	10	9	2	0			TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	X	77268400	77268400	A	G	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.2197	p.I733V	1.000	prints_ATPase_P-typ_cat/Cu-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	232	0	0	238	70	22.65	-	-	-	G	77268400	A	G	77268400	3	3	554	1	0	0	0	0	1	0	0	0	1194	217	8	5	2231	5	ATP7A	23	77268400	Missense_Mutation	SNP	A	TCGA-BH-A0HN-01A-11D-A099-09		77268400	78002160	25	49129										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980232	12980232	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gcccagtcactgcctctgttGaatgcctgccatcagggtgg	12	13	3	1			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	32	0	0	64	9	12.33	-	-	-	A	12980232	G	A	12980232	2	1	555	1	0	0	0	0	0	0	0	1	12519	1304	45	2		2	PRAMEF7	1	12980232	Silent	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09		12980232	236270389	1	49130										
FOXD3	0	genome.wustl.edu	37	chr1	63789206	63789206	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gccatcctgcagagcccgcaGaagaagctgaccctgagcgg	13	14	0	5			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	63789206	63789206	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	69_37n	1	known	silent	c.477	p.Q159	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140	29	0	0	19	16	45.71	-	-	-	A	63789206	G	A	63789206	2	1	555	1	0	0	0	0	0	0	0	1	6044	933	33	2		2	FOXD3	1	63789206	Silent	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09	50808974	63789206	185461415	2	49131										
KPRP	0	genome.wustl.edu	37	chr1	152732639	152732639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	aggctcctatagcagttgtgGcccccagtttcagtcaaggg	12	11	2	0			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	152732639	152732639	G	A	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	missense	c.575	p.G192D	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	168	0	0	307	81	20.61	-	-	-	A	152732639	G	A	152732639	3	1	555	1	0	0	0	0	1	0	0	0	8489	1203	42	4	577	4	KPRP	1	152732639	Missense_Mutation	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09	88943433	152732639	96517982	3	49132										
PLCH1	0	genome.wustl.edu	37	chr3	155199887	155199888	+	Frame_Shift_Del	DEL	TT	TT	-													0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gtcttctcccttggtaggacTttttggtaaccagccacgag							TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	3	155199887	155199888	TT	-	DEL	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	frame_shift_del	c.3952_3951	p.P1319fs	0.587:0.585	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	39	0	0	42	15	25.86	-	-	-	-	155199888	TT	-	155199887	7	5	555	1	0	1	0	1	0	0	0	0	12111	1609	56	0	1133	0	PLCH1	3	155199887	Frame_Shift_Del	DEL	TT	TCGA-BH-A0HO-01A-11W-A050-09		155199887	42822543	4	49133										
FNDC3B	0	genome.wustl.edu	37	chr3	171851264	171851264	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	atgtgttgttttggcaggttAttctcgttcaagttaatcca	9	6	2	0			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	3	171851264	171851264	A	G	SNP	FNDC3B	ENST00000336824	human	ensembl	69_37n	1	known	missense	c.115	p.I39V	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420	347	0	0	245	90	26.87	-	-	-	G	171851264	A	G	171851264	3	3	555	1	0	0	0	0	1	0	0	0	6016	449	16	5	121	5	FNDC3B	3	171851264	Missense_Mutation	SNP	A	TCGA-BH-A0HO-01A-11W-A050-09	16651377	171851264	26171166	5	49134										
PHOX2B	0	genome.wustl.edu	37	chr4	41750604	41750605	+	Frame_Shift_Ins	INS	-	-	A													0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	cgtaggcagaggaattgaggINStaagaatattccattttata							TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	4	41750604	41750605	-	A	INS	PHOX2B	ENST00000226382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.24_23	p.L9fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132	28	0	0	85	17	16.67	-	-	-	A	41750605	-	A	41750604	7	5	555	1	0	1	1	0	0	0	0	0	11933	1256	44	0	932	0	PHOX2B	4	41750604	Frame_Shift_Ins	INS	-	TCGA-BH-A0HO-01A-11W-A050-09		41750604	149403672	6	49135										
RAI14	0	genome.wustl.edu	37	chr5	34812309	34812309	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	aaagaccccaacaaaaccaaAgcaggtatttatctttgggg	8	9	1	1			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	34812309	34812309	A	C	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	1	known	missense	c.770	p.K257T	1.000	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	399	0	0	270	130	32.5	-	-	-	C	34812309	A	C	34812309	3	2	555	1	0	0	0	0	1	0	0	0	13091	72	3	5	860	5	RAI14	5	34812309	Missense_Mutation	SNP	A	TCGA-BH-A0HO-01A-11W-A050-09		34812309	146102951	7	49136										
DOCK2	0	genome.wustl.edu	37	chr5	169127104	169127104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	tggtggacaggaccaccgtgGtggccaggaagctgggattc	17	9	0	0			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	169127104	169127104	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.1219	p.V407M	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	116	0	0	83	47	35.88	-	-	-	A	169127104	G	A	169127104	3	1	555	1	0	0	0	0	1	0	0	0	4722	1261	44	4	1269	4	DOCK2	5	169127104	Missense_Mutation	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09	134314795	169127104	11788156	8	49137										
DLL1	0	genome.wustl.edu	37	chr6	170594673	170594674	+	Frame_Shift_Ins	INS	-	-	C													0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	taccctggttgcagaaaaggINScccccccagccttcctggca							TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	6	170594673	170594674	-	C	INS	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	frame_shift_ins	c.846_845	p.L283fs	0.973:1.000	smart_EGF-like	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	31	0	0	54	7	11.48	-	-	-	C	170594674	-	C	170594673	7	5	555	1	0	1	1	0	0	0	0	0	4602	1190	42	0	1349	0	DLL1	6	170594673	Frame_Shift_Ins	INS	-	TCGA-BH-A0HO-01A-11W-A050-09		170594673	520394	9	49138										
ZAN	0	genome.wustl.edu	37	chr7	100390155	100390155	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	cctggctggctggcgggaccGcaccctctgcggtgaggtgt	17	13	1	1			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	7	100390155	100390155	G	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.7838	p.R2613P	0.995	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	10	0	0	17	9	34.62	-	-	-	C	100390155	G	C	100390155	3	2	555	1	0	0	0	0	1	0	0	0	17610	1087	38	3	8002	3	ZAN	7	100390155	Missense_Mutation	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09		100390155	58748508	10	49139										
PLEC	0	genome.wustl.edu	37	chr8	145001190	145001190	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gactggaccttgggcttcttGgccggggaggccaccggctc	16	13	1	0			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	8	145001190	145001190	G	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.4311	p.A1437	0.996	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	19	0	0	18	5	21.74	-	-	-	A	145001190	G	A	145001190	2	1	555	1	0	0	0	0	0	0	0	1	12126	1335	47	4		4	PLEC	8	145001190	Silent	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09		145001190	1362832	11	49140										
ZBTB43	0	genome.wustl.edu	37	chr9	129595094	129595094	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	cccgctccagaaattgttagTtacttgacagcggcaagctt	9	11	0	2			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	9	129595094	129595094	T	C	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	1	known	silent	c.306	p.S102	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	41	0	0	78	41	34.45	-	-	-	C	129595094	T	C	129595094	2	2	555	1	0	0	0	0	0	0	0	1	17640	1722	60	5		5	ZBTB43	9	129595094	Silent	SNP	T	TCGA-BH-A0HO-01A-11W-A050-09		129595094	11618337	12	49141										
CHST11	0	genome.wustl.edu	37	chr12	105150939	105150939	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	cggctcatgatggtcctgacCgggcgggggaagtacagcga	17	10	1	2			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	12	105150939	105150939	C	T	SNP	CHST11	ENST00000303694	human	ensembl	69_37n	1	known	silent	c.417	p.T139	0.051	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	78	0	0	72	23	24.21	-	-	-	T	105150939	C	T	105150939	2	4	555	1	0	0	0	0	0	0	0	1	3428	639	23	1		1	CHST11	12	105150939	Silent	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09		105150939	28700956	13	49142										
EFS	0	genome.wustl.edu	37	chr14	23829996	23829997	+	Frame_Shift_Ins	INS	-	-	G													0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	tcggcggaaggacagctcctINSggggggactcagcggtgttg							TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	14	23829996	23829997	-	G	INS	EFS	ENST00000216733	human	ensembl	69_37n	-1	known	frame_shift_ins	c.65_64	p.Q22fs	1.000:1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	20	0	0	21	3	12.5	-	-	-	G	23829997	-	G	23829996	7	5	555	1	0	1	1	0	0	0	0	0	4994	1580	55	0	1640	0	EFS	14	23829996	Frame_Shift_Ins	INS	-	TCGA-BH-A0HO-01A-11W-A050-09		23829996	83519544	14	49143										
NDN	0	genome.wustl.edu	37	chr15	23931940	23931940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gggcgaggatgaggctggtgCgccggaggatgctcctgcac	19	10	0	1			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	23931940	23931940	C	T	SNP	NDN	ENST00000331837	human	ensembl	69_37n	-1	known	missense	c.425	p.R142H	0.982	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	19	0	0	8	9	52.94	-	-	-	T	23931940	C	T	23931940	3	4	555	1	0	0	0	0	1	0	0	0	10319	768	27	1	544	1	NDN	15	23931940	Missense_Mutation	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09		23931940	78599452	15	49144										
LINGO1	0	genome.wustl.edu	37	chr15	77907821	77907821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	tgtccagcttggtcaggttgCtgaggccagtgaagacgcct	14	10	1	3			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	77907821	77907821	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.428	p.S143N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	53	0	0	83	42	33.6	-	-	-	T	77907821	C	T	77907821	3	4	555	1	0	0	0	0	1	0	0	0	8870	797	28	4	1438	4	LINGO1	15	77907821	Missense_Mutation	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09	53975881	77907821	24623571	16	49145										
SMCHD1	0	genome.wustl.edu	37	chr18	2747542	2747542	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	cattccagtgattaatggaaGagatttacagaaccctatta	7	7	0	3			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	18	2747542	2747542	G	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.3824	p.R1275I	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	147	0	0	81	28	25.69	-	-	-	T	2747542	G	T	2747542	3	4	555	1	0	0	0	0	1	0	0	0	14877	942	33	2	3942	2	SMCHD1	18	2747542	Missense_Mutation	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09		2747542	75329706	17	49146										
FCGBP	0	genome.wustl.edu	37	chr19	40408747	40408747	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	acaaggtcgtaggccacacgCaggccgaagtcggtctcaat	12	12	1	0			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	40408747	40408747	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.4092	p.L1364	0.827	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	60	0	0	84	49	36.84	-	-	-	T	40408747	C	T	40408747	2	4	555	1	0	0	0	0	0	0	0	1	5824	697	25	4		4	FCGBP	19	40408747	Silent	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09		40408747	18720236	18	49147										
TMC4	0	genome.wustl.edu	37	chr19	54676772	54676772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gggccagccaccccctagagGagccccaggcttctgattcc	11	17	1	2			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	54676772	54676772	G	A	SNP	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	missense	c.41	p.S14F	0.291	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	46	0	0	63	19	23.17	-	-	-	A	54676772	G	A	54676772	3	1	555	1	0	0	0	0	1	0	0	0	16082	1174	41	2	2157	2	TMC4	19	54676772	Missense_Mutation	SNP	G	TCGA-BH-A0HO-01A-11W-A050-09	14268025	54676772	4452211	19	49148										
BACH1	0	genome.wustl.edu	37	chr21	30699316	30699316	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	gtgataggagtagtgtggagCgagaagtggcagaacaccta	16	5	0	3			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	21	30699316	30699316	C	T	SNP	BACH1	ENST00000286800	human	ensembl	69_37n	1	known	nonsense	c.1171	p.R391*	0.901	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273	94	0	0	140	87	38.16	-	-	-	T	30699316	C	T	30699316	4	4	555	1	0	0	0	0	0	1	0	0	1287	760	27	1	1177	1	BACH1	21	30699316	Nonsense_Mutation	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09		30699316	17430579	20	49149										
ENTHD1	0	genome.wustl.edu	37	chr22	40161426	40161426	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0952380952380952	2	0.696659901798388	1.61382113821138	0	1.76053215077605	0.4	0.991179622791967	0	taagtcggggctgataaactCctctttacttgaccaacatg	8	10	1	2			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	22	40161426	40161426	C	A	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	nonsense	c.1021	p.E341*	0.990	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	154	0	0	136	54	28.42	-	-	-	A	40161426	C	A	40161426	4	1	555	1	0	0	0	0	0	1	0	0	5174	864	30	2	810	2	ENTHD1	22	40161426	Nonsense_Mutation	SNP	C	TCGA-BH-A0HO-01A-11W-A050-09		40161426	11143140	21	49150										
CHD5	0	genome.wustl.edu	37	chr1	6215763	6215763	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cactcggccatgagctgcccCgaggacttgggctcctacag	12	15	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	6215763	6215763	C	T	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	silent	c.402	p.S134	0.414	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	83	0	0	17	4	19.05	-	-	-	T	6215763	C	T	6215763	2	4	556	1	0	0	0	0	0	0	0	1	3357	639	23	1		1	CHD5	1	6215763	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		6215763	243034858	1	49151										
ESPN	0	genome.wustl.edu	37	chr1	6504709	6504709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	acgactcctgctcctccagcCactccagcatcaagggccag	8	18	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	6504709	6504709	C	A	SNP	ESPN	ENST00000377828	human	ensembl	69_37n	1	known	missense	c.1159	p.H387N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017	64	0	0	18	5	21.74	-	-	-	A	6504709	C	A	6504709	3	1	556	1	0	0	0	0	1	0	0	0	5291	594	21	4	1181	4	ESPN	1	6504709	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	288946	6504709	242745912	2	49152										
DNAJC11	0	genome.wustl.edu	37	chr1	6727831	6727831	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctctgcagccgctcaaactCctctcgaatttcagcagggg	9	14	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	6727831	6727831	C	G	SNP	DNAJC11	ENST00000377577	human	ensembl	69_37n	-1	known	missense	c.316	p.E106Q	1.000	NULL	pfam_DnaJ-like_C11_C,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC11	HGNC	ENSG00000007923	65	0	0	59	13	18.06	-	-	-	G	6727831	C	G	6727831	3	3	556	1	0	0	0	0	1	0	0	0	4665	864	30	2	1415	2	DNAJC11	1	6727831	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	223122	6727831	242522790	3	49153										
PIK3CD	0	genome.wustl.edu	37	chr1	9781571	9781571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tacgagtcctacctggactgCgagctgaccaaattcctgct	9	13	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	9781571	9781571	C	T	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	silent	c.1953	p.C651	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	73	0	0	14	2	12.5	-	-	-	T	9781571	C	T	9781571	2	4	556	1	0	0	0	0	0	0	0	1	11989	776	27	1		1	PIK3CD	1	9781571	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3053740	9781571	239469050	4	49154										
LZIC	0	genome.wustl.edu	37	chr1	9995660	9995660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agtttcctttttggtttcttCatattcatctgtatcaagtt	5	7	5	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	9995660	9995660	C	T	SNP	LZIC	ENST00000541052	human	ensembl	69_37n	-1	known	missense	c.190	p.E64K	1.000	NULL	pfam_ICAT,superfamily_ICAT	-	no_errors	LZIC	HGNC	ENSG00000162441	146	0	0	252	52	17.05	-	-	-	T	9995660	C	T	9995660	3	4	556	1	0	0	0	0	1	0	0	0	9202	835	29	2	465	2	LZIC	1	9995660	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	214089	9995660	239254961	5	49155										
MTOR	0	genome.wustl.edu	37	chr1	11174872	11174872	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcccgatatccactcacctCcatagcattggtcaacattc	4	15	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	11174872	11174872	C	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.7162	p.E2388Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	89	0	0	155	27	14.84	-	-	-	G	11174872	C	G	11174872	3	3	556	1	0	0	0	0	1	0	0	0	10026	864	30	2	515	2	MTOR	1	11174872	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1179212	11174872	238075749	6	49156										
PRAMEF4	0	genome.wustl.edu	37	chr1	12939611	12939611	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtgtggctcagcaggttctcCagggtggccatgcagatggg	17	9	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	12939611	12939611	C	T	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1191	p.L397	0.001	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	214	0	0	154	28	15.38	-	-	-	T	12939611	C	T	12939611	2	4	556	1	0	0	0	0	0	0	0	1	12517	581	21	4		4	PRAMEF4	1	12939611	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1764739	12939611	236311010	7	49157										
PRAMEF4	0	genome.wustl.edu	37	chr1	12943161	12943161	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	caaagcttggtcccttagcaGgctccgccctgcaagctcca	9	16	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	12943161	12943161	G	T	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.55	p.L19M	0.074	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	130	0	0	14	16	53.33	-	-	-	T	12943161	G	T	12943161	3	4	556	1	0	0	0	0	1	0	0	0	12517	991	35	4	1393	4	PRAMEF4	1	12943161	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	3550	12943161	236307460	8	49158										
SPEN	0	genome.wustl.edu	37	chr1	16257914	16257914	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aggaaggttcatcaggtgacCagccgccttatctggatgcc	12	11	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	16257914	16257914	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.5179	p.Q1727*	0.015	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	63	0	0	12	5	29.41	-	-	-	T	16257914	C	T	16257914	4	4	556	1	0	0	0	0	0	1	0	0	15129	595	21	4	5221	4	SPEN	1	16257914	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3314753	16257914	232992707	9	49159										
HSPB7	0	genome.wustl.edu	37	chr1	16342076	16342076	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaagggaagggagaggcactCagattttgatctccgtccgg	14	8	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	16342076	16342076	C	T	SNP	HSPB7	ENST00000487046	human	ensembl	69_37n	-1	known	silent	c.527	p.*176	1.000	NULL	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20,prints_Alpha-crystallin/HSP	-	no_errors	HSPB7	HGNC	ENSG00000173641	107	0	0	12	4	25	-	-	-	T	16342076	C	T	16342076	2	4	556	1	0	0	0	0	0	0	0	1	7476	837	29	2		2	HSPB7	1	16342076	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	84162	16342076	232908545	10	49160										
KIAA0754	0	genome.wustl.edu	37	chr1	39877483	39877483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atttttcaggggctgccttaGaaaaggaacagcatttaggc	11	7	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	39877483	39877483	G	C	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.1138	p.E380Q	0.933	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	115	0	0	120	56	31.82	-	-	-	C	39877483	G	C	39877483	3	2	556	1	0	0	0	0	1	0	0	0	8244	943	33	2	1548	2	KIAA0754	1	39877483	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	23535407	39877483	209373138	11	49161										
KIAA0754	0	genome.wustl.edu	37	chr1	39877816	39877816	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttgcttctgagctggccaaaGacaatggcagtttgtcccag	11	10	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	39877816	39877816	G	C	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.1471	p.D491H	1.000	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	133	0	0	111	49	30.63	-	-	-	C	39877816	G	C	39877816	3	2	556	1	0	0	0	0	1	0	0	0	8244	942	33	2	1881	2	KIAA0754	1	39877816	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	333	39877816	209372805	12	49162										
RLF	0	genome.wustl.edu	37	chr1	40705986	40705986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggacaaagcattaacagactGtggagagcttgccttaaaac	10	8	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	40705986	40705986	G	A	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.5612	p.C1871Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	116	0	0	157	45	22.28	-	-	-	A	40705986	G	A	40705986	3	1	556	1	0	0	0	0	1	0	0	0	13475	1377	48	4	5642	4	RLF	1	40705986	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	828170	40705986	208544635	13	49163										
NFYC	0	genome.wustl.edu	37	chr1	41228646	41228646	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggtcaagcccaacaggcccaGagtggcactggacagaccat	12	13	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	41228646	41228646	G	A	SNP	NFYC	ENST00000414185	human	ensembl	69_37n	1	putative	missense	c.295	p.E99K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NFYC	HGNC	ENSG00000066136	55	0	0	26	3	10.34	-	-	-	A	41228646	G	A	41228646	3	1	556	1	0	0	0	0	1	0	0	0	10463	933	33	2	670	2	NFYC	1	41228646	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	522660	41228646	208021975	14	49164										
PTPRF	0	genome.wustl.edu	37	chr1	44087660	44087660	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agtacctcggcagctttgacCactatgcaacgtaactaccg	8	13	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	44087660	44087660	C	A	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.5710	p.H1904N	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	73	0	0	13	4	23.53	-	-	-	A	44087660	C	A	44087660	3	1	556	1	0	0	0	0	1	0	0	0	12884	594	21	4	5836	4	PTPRF	1	44087660	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2859014	44087660	205162961	15	49165										
CYP4B1	0	genome.wustl.edu	37	chr1	47283813	47283813	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtcccttcaggtctttgactCtctgcgcttttccactgaga	8	13	3	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	47283813	47283813	C	T	SNP	CYP4B1	ENST00000371923	human	ensembl	69_37n	1	known	missense	c.1283	p.S428F	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973	139	0	0	116	43	27.04	-	-	-	T	47283813	C	T	47283813	3	4	556	1	0	0	0	0	1	0	0	0	4216	913	32	2	1325	2	CYP4B1	1	47283813	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3196153	47283813	201966808	16	49166										
DNAJC6	0	genome.wustl.edu	37	chr1	65878608	65878608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtttttgttttctctacaggCtactgggcaaccctatgaac	8	10	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	65878608	65878608	C	G	SNP	DNAJC6	ENST00000371069	human	ensembl	69_37n	1	known	missense	c.2813	p.A938G	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DnaJ_N,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	DNAJC6	HGNC	ENSG00000116675	167	0	0	220	50	18.52	-	-	-	G	65878608	C	G	65878608	3	3	556	1	0	0	0	0	1	0	0	0	4688	811	28	4	2716	4	DNAJC6	1	65878608	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	18594795	65878608	183372013	17	49167										
ZNHIT6	0	genome.wustl.edu	37	chr1	86144457	86144457	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcattaatagttttatcatCtggtactctttacaacaaag	4	7	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	86144457	86144457	C	A	SNP	ZNHIT6	ENST00000370574	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366Y	1.000	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT6	HGNC	ENSG00000117174	215	0	0	276	62	18.34	-	-	-	A	86144457	C	A	86144457	3	1	556	1	0	0	0	0	1	0	0	0	18302	913	32	2	332	2	ZNHIT6	1	86144457	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	20265849	86144457	163106164	18	49168										
FRRS1	0	genome.wustl.edu	37	chr1	100174482	100174482	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atgaccccagtcttccaagtGagaattcacaaatatgctcc	6	12	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	100174482	100174482	G	A	SNP	FRRS1	ENST00000287474	human	ensembl	69_37n	-1	known	missense	c.1853	p.S618L	0.000	NULL	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	78	0	0	56	19	25.33	-	-	-	A	100174482	G	A	100174482	3	1	556	1	0	0	0	0	1	0	0	0	6109	1294	45	2	31	2	FRRS1	1	100174482	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	14030025	100174482	149076139	19	49169										
VAV3	0	genome.wustl.edu	37	chr1	108303488	108303488	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	taaatttcccattatttgctCttttggaacattcctaatga	4	8	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	108303488	108303488	C	G	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	missense	c.935	p.R312T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215	96	0	0	118	30	20.27	-	-	-	G	108303488	C	G	108303488	3	3	556	1	0	0	0	0	1	0	0	0	17230	913	32	2	1705	2	VAV3	1	108303488	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	8129006	108303488	140947133	20	49170										
PROK1	0	genome.wustl.edu	37	chr1	110998922	110998922	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aacctgctgtgctccaggttCccggacggcaggtaccgctg	13	14	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	110998922	110998922	C	T	SNP	PROK1	ENST00000271331	human	ensembl	69_37n	1	known	silent	c.267	p.F89	0.042	pfam_Prokineticin_domain	pfam_Prokineticin_domain	-	no_errors	PROK1	HGNC	ENSG00000143125	58	0	0	37	9	19.57	-	-	-	T	110998922	C	T	110998922	2	4	556	1	0	0	0	0	0	0	0	1	12631	854	30	2		2	PROK1	1	110998922	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2695434	110998922	138251699	21	49171										
PEX11B	0	genome.wustl.edu	37	chr1	145522859	145522859	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attgtggggctttgtggcctCgtgtcctccatcctgtctat	11	11	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	145522859	145522859	C	T	SNP	PEX11B	ENST00000369306	human	ensembl	69_37n	1	known	silent	c.720	p.L240	0.017	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	74	0	0	29	12	29.27	-	-	-	T	145522859	C	T	145522859	2	4	556	1	0	0	0	0	0	0	0	1	11812	871	31	1		1	PEX11B	1	145522859	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	34523937	145522859	103727762	22	49172										
CHD1L	0	genome.wustl.edu	37	chr1	146759364	146759364	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tatttacagctctggaaaagCgatccgctgagccaagaaaa	9	9	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	146759364	146759364	C	T	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	nonsense	c.2272	p.R758*	0.948	pfscan_A1pp	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	124	1	0.8	183	41	18.3	-	-	-	T	146759364	C	T	146759364	4	4	556	1	0	0	0	0	0	1	0	0	3353	760	27	1	2346	1	CHD1L	1	146759364	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1236505	146759364	102491257	23	49173										
PSMB4	0	genome.wustl.edu	37	chr1	151372187	151372187	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgtctgcactttacagaggtCcaatcacgcggacccagtaa	9	13	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	151372187	151372187	C	G	SNP	PSMB4	ENST00000290541	human	ensembl	69_37n	1	known	missense	c.124	p.P42A	0.434	pirsf_Proteasome_endopept_cplx_B	pfam_Proteasome_sua/b,pirsf_Proteasome_endopept_cplx_B	-	no_errors	PSMB4	HGNC	ENSG00000159377	58	0	0	27	5	15.62	-	-	-	G	151372187	C	G	151372187	3	3	556	1	0	0	0	0	1	0	0	0	12759	855	30	2	126	2	PSMB4	1	151372187	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4612823	151372187	97878434	24	49174										
RPTN	0	genome.wustl.edu	37	chr1	152129019	152129019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gaaatccttgtcttgtctctCagactgattgtggtgagaat	10	7	3	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	152129019	152129019	C	G	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.556	p.E186Q	0.714	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	313	0	0	257	51	16.56	-	-	-	G	152129019	C	G	152129019	3	3	556	1	0	0	0	0	1	0	0	0	13750	835	29	2	1802	2	RPTN	1	152129019	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	756832	152129019	97121602	25	49175										
ARHGAP30	0	genome.wustl.edu	37	chr1	161018228	161018228	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gctacacctgaaccttcagaGagggtgtcctcttctaaata	8	11	3	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	161018228	161018228	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	silent	c.2583	p.L861	0.033	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	125	0	0	143	51	26.15	-	-	-	A	161018228	G	A	161018228	2	1	556	1	0	0	0	0	0	0	0	1	881	929	33	2		2	ARHGAP30	1	161018228	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	8889209	161018228	88232393	26	49176										
RGS4	0	genome.wustl.edu	37	chr1	163043290	163043290	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcttgaagtctgaatatagtGaggagaatattgacttctgg	11	4	3	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	163043290	163043290	G	A	SNP	RGS4	ENST00000421743	human	ensembl	69_37n	1	known	missense	c.547	p.E183K	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS4	HGNC	ENSG00000117152	111	0	0	167	23	12.11	-	-	-	A	163043290	G	A	163043290	3	1	556	1	0	0	0	0	1	0	0	0	13391	1291	45	2	565	2	RGS4	1	163043290	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2025062	163043290	86207331	27	49177										
NUF2	0	genome.wustl.edu	37	chr1	163318851	163318851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actaaaagatgctgctgaaaGggagaaactgaagtcccagg	12	7	0	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	163318851	163318851	G	A	SNP	NUF2	ENST00000271452	human	ensembl	69_37n	1	known	missense	c.1241	p.R414K	0.874	NULL	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228	94	0	0	123	101	45.09	-	-	-	A	163318851	G	A	163318851	3	1	556	1	0	0	0	0	1	0	0	0	10820	1000	35	4	1287	4	NUF2	1	163318851	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	275561	163318851	85931770	28	49178										
FMO1	0	genome.wustl.edu	37	chr1	171251126	171251126	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttttgtttaggactcagctGaaagagtttgtgctaaatga	10	4	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	171251126	171251126	G	A	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	silent	c.837	p.L279	0.005	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	44	0	0	108	18	14.29	-	-	-	A	171251126	G	A	171251126	2	1	556	1	0	0	0	0	0	0	0	1	6000	1277	45	2		2	FMO1	1	171251126	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	7932275	171251126	77999495	29	49179										
CACNA1E	0	genome.wustl.edu	37	chr1	181767970	181767970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gaagaagatgacaaatgctaGaggctgctcccccctccgat	10	12	0	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	181767970	181767970	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	silent	c.6942	p.*2314	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	32	0	0	14	4	22.22	-	-	-	A	181767970	G	A	181767970	2	1	556	1	0	0	0	0	0	0	0	1	2567	937	33	2		2	CACNA1E	1	181767970	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	10516844	181767970	67482651	30	49180										
HMCN1	0	genome.wustl.edu	37	chr1	186014856	186014856	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gggagaagaacagaatgtctCtgtcctcattagccaagctg	11	9	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	186014856	186014856	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.6341	p.S2114F	0.999	pfam_Ig_I-set,smart_Ig_V-set_subgr,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	204	0	0	147	35	19.23	-	-	-	T	186014856	C	T	186014856	3	4	556	1	0	0	0	0	1	0	0	0	7271	913	32	2	6503	2	HMCN1	1	186014856	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4246886	186014856	63235765	31	49181										
CFH	0	genome.wustl.edu	37	chr1	196695948	196695948	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	acatggctgggcccagctttCttcccctccttattactatg	7	14	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	196695948	196695948	C	T	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.2114	p.S705F	0.256	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	127	0	0	127	24	15.89	-	-	-	T	196695948	C	T	196695948	3	4	556	1	0	0	0	0	1	0	0	0	3312	913	32	2	2186	2	CFH	1	196695948	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	10681092	196695948	52554673	32	49182										
CACNA1S	0	genome.wustl.edu	37	chr1	201030419	201030419	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcttgtccagctcacagttCttgtactcagtctctccctg	6	14	5	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	201030419	201030419	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.3231	p.K1077	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	122	0	0	125	24	16.11	-	-	-	T	201030419	C	T	201030419	2	4	556	1	0	0	0	0	0	0	0	1	2572	912	32	2		2	CACNA1S	1	201030419	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4334471	201030419	48220202	33	49183										
DSTYK	0	genome.wustl.edu	37	chr1	205130512	205130512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ccggcctgagtggccagcttCcagctgggagagaaacagaa	14	11	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	205130512	205130512	C	T	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	missense	c.1822	p.E608K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	79	0	0	35	9	20.45	-	-	-	T	205130512	C	T	205130512	3	4	556	1	0	0	0	0	1	0	0	0	4820	864	30	2	995	2	DSTYK	1	205130512	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4100093	205130512	44120109	34	49184										
USH2A	0	genome.wustl.edu	37	chr1	216061968	216061968	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	catggaatgactcctcgggaGagtcaccagggtagtaactt	12	9	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	216061968	216061968	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.8023	p.L2675V	0.991	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	142	0	0	117	29	19.86	-	-	-	C	216061968	G	C	216061968	3	2	556	1	0	0	0	0	1	0	0	0	17133	942	33	2	7713	2	USH2A	1	216061968	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	10931456	216061968	33188653	35	49185										
SUSD4	0	genome.wustl.edu	37	chr1	223402560	223402560	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgatttgatgcagtagacttGataagaaggaaaccactctc	9	7	1	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	223402560	223402560	G	C	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.895	p.Q299E	0.997	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	66	0	0	29	8	21.62	-	-	-	C	223402560	G	C	223402560	3	2	556	1	0	0	0	0	1	0	0	0	15501	1299	45	2	593	2	SUSD4	1	223402560	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	7340592	223402560	25848061	36	49186										
ENAH	0	genome.wustl.edu	37	chr1	225742783	225742783	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggaatggcacagtttatcacGacctaaaaaataataattct	6	7	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	1	225742783	225742783	G	A	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	silent	c.174	p.V58	0.925	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	95	0	0	100	21	17.36	-	-	-	A	225742783	G	A	225742783	2	1	556	1	0	0	0	0	0	0	0	1	5148	1045	37	1		1	ENAH	1	225742783	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2340223	225742783	23507838	37	49187										
ATAD2B	0	genome.wustl.edu	37	chr2	24011418	24011418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tggtggagccattgatgcctGattgagaatcaattcttgaa	11	6	2	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	24011418	24011418	G	C	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.2740	p.Q914E	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	270	0	0	329	40	10.84	-	-	-	C	24011418	G	C	24011418	3	2	556	1	0	0	0	0	1	0	0	0	1076	1299	45	2	1672	2	ATAD2B	2	24011418	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		24011418	219187955	38	49188										
KIF3C	0	genome.wustl.edu	37	chr2	26203692	26203692	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcacctggggcttgttcttGatgttcttggctcggttggc	13	9	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	26203692	26203692	G	T	SNP	KIF3C	ENST00000264712	human	ensembl	69_37n	-1	known	silent	c.1095	p.I365	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731	145	0	0	46	12	20.69	-	-	-	T	26203692	G	T	26203692	2	4	556	1	0	0	0	0	0	0	0	1	8354	1280	45	2		2	KIF3C	2	26203692	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2192274	26203692	216995681	39	49189										
HAAO	0	genome.wustl.edu	37	chr2	42997320	42997320	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gttctgtactgctcagagctGaagaacctgcaaggacgaac	11	10	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	42997320	42997320	G	A	SNP	HAAO	ENST00000294973	human	ensembl	69_37n	-1	known	silent	c.447	p.F149	1.000	pfam_3hydroanth_dOase,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882	104	0	0	24	6	20	-	-	-	A	42997320	G	A	42997320	2	1	556	1	0	0	0	0	0	0	0	1	6988	1281	45	2		2	HAAO	2	42997320	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	16793628	42997320	200202053	40	49190										
XPO1	0	genome.wustl.edu	37	chr2	61708356	61708356	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaatctcttaaatgttccttGaaagcaggaatatcttgatt	6	6	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	61708356	61708356	G	C	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.3033	p.F1011L	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	66	0	0	133	42	24	-	-	-	C	61708356	G	C	61708356	3	2	556	1	0	0	0	0	1	0	0	0	17542	1281	45	2	190	2	XPO1	2	61708356	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	18711036	61708356	181491017	41	49191										
ZNF638	0	genome.wustl.edu	37	chr2	71576606	71576606	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gaaaatatgccattaattttGagggatataagaatgcgaaa	9	3	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	71576606	71576606	G	C	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.522	p.L174F	0.998	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	93	0	0	112	30	21.13	-	-	-	C	71576606	G	C	71576606	3	2	556	1	0	0	0	0	1	0	0	0	18151	1281	45	2	524	2	ZNF638	2	71576606	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	9868250	71576606	171622767	42	49192										
INPP4A	0	genome.wustl.edu	37	chr2	99203969	99203969	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgaagagaaaatacaatgaaGaatgttggaagtcgcaaata	10	4	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	99203969	99203969	G	C	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	missense	c.2832	p.K944N	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4A	HGNC	ENSG00000040933	141	0	0	141	18	11.32	-	-	-	C	99203969	G	C	99203969	3	2	556	1	0	0	0	0	1	0	0	0	7806	933	33	2	3111	2	INPP4A	2	99203969	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	27627363	99203969	143995404	43	49193										
AFF3	0	genome.wustl.edu	37	chr2	100625289	100625289	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctaccttgtagggctcactGaagagagagtaactagaatt	10	7	2	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	100625289	100625289	G	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.234	p.F78L	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	268	0	0	197	31	13.6	-	-	-	T	100625289	G	T	100625289	3	4	556	1	0	0	0	0	1	0	0	0	358	1281	45	2	3605	2	AFF3	2	100625289	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	1421320	100625289	142574084	44	49194										
BUB1	0	genome.wustl.edu	37	chr2	111398712	111398712	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttttggaaaaagtttcatatCtatactctgacccaggtcaa	6	8	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	111398712	111398712	C	G	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	missense	c.2854	p.D952H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	80	0	0	127	31	19.62	-	-	-	G	111398712	C	G	111398712	3	3	556	1	0	0	0	0	1	0	0	0	1579	913	32	2	415	2	BUB1	2	111398712	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	10773423	111398712	131800661	45	49195										
UPP2	0	genome.wustl.edu	37	chr2	158991285	158991285	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtggtctgtgtgacacttctCgacagactcgactgtgatca	11	10	3	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	158991285	158991285	C	G	SNP	UPP2	ENST00000409859	human	ensembl	69_37n	1	known	silent	c.1008	p.L336	0.004	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP2	HGNC	ENSG00000007001	89	0	0	37	20	35.09	-	-	-	G	158991285	C	G	158991285	2	3	556	1	0	0	0	0	0	0	0	1	17110	871	31	3		3	UPP2	2	158991285	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	47592573	158991285	84208088	46	49196										
TANC1	0	genome.wustl.edu	37	chr2	160035600	160035600	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgagacaaaacccgcatgttCtgccacccgtccttcaggga	9	15	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	160035600	160035600	C	T	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	silent	c.2436	p.F812	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	31	0	0	9	2	18.18	-	-	-	T	160035600	C	T	160035600	2	4	556	1	0	0	0	0	0	0	0	1	15636	912	32	2		2	TANC1	2	160035600	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1044315	160035600	83163773	47	49197										
METTL8	0	genome.wustl.edu	37	chr2	172196014	172196014	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cttgaaaaacttattcttatGaatcttgtaaaatgtgtccc	5	7	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	172196014	172196014	G	C	SNP	METTL8	ENST00000392604	human	ensembl	69_37n	-1	known	missense	c.286	p.H96D	1.000	NULL	pfam_Methyltransf_11	-	no_errors	METTL8	HGNC	ENSG00000123600	59	0	0	111	17	13.28	-	-	-	C	172196014	G	C	172196014	3	2	556	1	0	0	0	0	1	0	0	0	9578	1290	45	2	965	2	METTL8	2	172196014	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	12160414	172196014	71003359	48	49198										
TTN	0	genome.wustl.edu	37	chr2	179497091	179497091	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtaaatacagcactttccttCtctttggcagttacatcttt	5	10	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	179497091	179497091	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.35826	p.E11942D	0.996	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	158	0	0	146	46	23.96	-	-	-	G	179497091	C	G	179497091	3	3	556	1	0	0	0	0	1	0	0	0	16832	912	32	2	64671	2	TTN	2	179497091	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	7301077	179497091	63702282	49	49199										
ZNF385B	0	genome.wustl.edu	37	chr2	180634302	180634302	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atcactcagctgcttcactcGtttgcggtgggatttgccgt	11	11	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	180634302	180634302	G	A	SNP	ZNF385B	ENST00000410066	human	ensembl	69_37n	-1	known	nonsense	c.181	p.R61*	0.985	smart_Znf_U1	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331	92	0	0	15	7	31.82	-	-	-	A	180634302	G	A	180634302	4	1	556	1	0	0	0	0	0	1	0	0	17973	1153	40	1	1295	1	ZNF385B	2	180634302	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	1137211	180634302	62565071	50	49200										
MFSD6	0	genome.wustl.edu	37	chr2	191301691	191301691	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtcacaatcgtagacacggtCacactccagtatctgggaaa	9	11	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	191301691	191301691	C	T	SNP	MFSD6	ENST00000281416	human	ensembl	69_37n	1	known	silent	c.936	p.V312	0.103	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690	126	0	0	143	38	20.99	-	-	-	T	191301691	C	T	191301691	2	4	556	1	0	0	0	0	0	0	0	1	9606	813	29	2		2	MFSD6	2	191301691	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	10667389	191301691	51897682	51	49201										
SF3B1	0	genome.wustl.edu	37	chr2	198267361	198267361	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agctatctgttgtacaatctTaataccagtgtgtctcgctt	7	9	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	198267361	198267361	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.1996	p.K666E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	104	0	0	106	43	28.86	-	-	-	C	198267361	T	C	198267361	3	2	556	1	0	0	0	0	1	0	0	0	14237	1763	61	5	1966	5	SF3B1	2	198267361	Missense_Mutation	SNP	T	TCGA-BH-A0HP-01A-12D-A099-09	6965670	198267361	44932012	52	49202										
FAM126B	0	genome.wustl.edu	37	chr2	201887608	201887608	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gctggtacaagtgtttttttCcggtgtaaagttgctgcata	11	6	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	201887608	201887608	C	G	SNP	FAM126B	ENST00000418596	human	ensembl	69_37n	-1	known	silent	c.99	p.R33	1.000	pfam_Hyccin	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744	113	0	0	211	70	24.91	-	-	-	G	201887608	C	G	201887608	2	3	556	1	0	0	0	0	0	0	0	1	5470	842	30	2		2	FAM126B	2	201887608	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3620247	201887608	41311765	53	49203										
NOP58	0	genome.wustl.edu	37	chr2	203139857	203139857	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttctaaatgagaagaaacttCaagaggttgatagtttatgg	10	3	2	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	203139857	203139857	C	G	SNP	NOP58	ENST00000264279	human	ensembl	69_37n	1	known	missense	c.67	p.Q23E	1.000	pfam_NOP5_N	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044	76	0	0	165	38	18.72	-	-	-	G	203139857	C	G	203139857	3	3	556	1	0	0	0	0	1	0	0	0	10612	827	29	2	73	2	NOP58	2	203139857	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1252249	203139857	40059516	54	49204										
MAP2	0	genome.wustl.edu	37	chr2	210557864	210557864	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcaagggggaagcttcactCttcctttagatgtcatgaag	10	8	4	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	210557864	210557864	C	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.970	p.L324V	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	84	0	0	47	12	20.34	-	-	-	G	210557864	C	G	210557864	3	3	556	1	0	0	0	0	1	0	0	0	9306	913	32	2	984	2	MAP2	2	210557864	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	7418007	210557864	32641509	55	49205										
ERBB4	0	genome.wustl.edu	37	chr2	212285277	212285277	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcttccaaatcctcttcatcCaagagattctgaaagaactt	4	11	4	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	212285277	212285277	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	silent	c.3024	p.L1008	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	123	0	0	145	51	26.02	-	-	-	T	212285277	C	T	212285277	2	4	556	1	0	0	0	0	0	0	0	1	5246	593	21	4		4	ERBB4	2	212285277	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1727413	212285277	30914096	56	49206										
DNPEP	0	genome.wustl.edu	37	chr2	220251466	220251466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actggccccctacagcaaaaGctatgatggtggaggagttc	12	10	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	220251466	220251466	G	T	SNP	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	missense	c.254	p.A85D	1.000	pfam_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	107	0	0	20	9	31.03	-	-	-	T	220251466	G	T	220251466	3	4	556	1	0	0	0	0	1	0	0	0	4714	971	34	4	1251	4	DNPEP	2	220251466	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	7966189	220251466	22947907	57	49207										
SPEG	0	genome.wustl.edu	37	chr2	220338317	220338317	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gccagcgtcaccgtcacattCaaccatgtggaggcccaggt	11	14	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	220338317	220338317	C	G	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.4239	p.F1413L	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	63	0	0	12	5	29.41	-	-	-	G	220338317	C	G	220338317	3	3	556	1	0	0	0	0	1	0	0	0	15127	825	29	2	4317	2	SPEG	2	220338317	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	86851	220338317	22861056	58	49208										
TRIP12	0	genome.wustl.edu	37	chr2	230678948	230678948	+	Splice_Site	DEL	C	C	-													0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cccttcagtaacaacacttaCcgcctgtagaatggctttac							TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	230678948	230678948	C	-	DEL	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	splice_site_del	c.1680+1	e10+1	1.000	-	-	-	no_errors	TRIP12	HGNC	ENSG00000153827	85	0	0	103	30	22.56	-	-	-	-	230678948	C	-	230678948	8	5	556	1	0	1	0	1	0	0	1	0	16652	521	18	0	4421	0	TRIP12	2	230678948	Splice_Site	DEL	C	TCGA-BH-A0HP-01A-12D-A099-09	10340631	230678948	12520425	59	49209										
TRPM8	0	genome.wustl.edu	37	chr2	234878931	234878931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctcccccttcgtggtcttctCctggaatgtggtcttctaca	8	14	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	234878931	234878931	C	T	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.2216	p.S739F	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	273	0	0	144	42	22.58	-	-	-	T	234878931	C	T	234878931	3	4	556	1	0	0	0	0	1	0	0	0	16688	855	30	2	2278	2	TRPM8	2	234878931	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4199983	234878931	8320442	60	49210										
PRR21	0	genome.wustl.edu	37	chr2	240982327	240982327	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gccgtgggggaagagctgttGaagaaaagttgtgaatgaaa	16	3	0	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	2	240982327	240982327	G	C	SNP	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	missense	c.73	p.Q25E	0.004	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	404	0	0	105	37	26.06	-	-	-	C	240982327	G	C	240982327	3	2	556	1	0	0	0	0	1	0	0	0	12673	1299	45	2	1099	2	PRR21	2	240982327	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	6103396	240982327	2217046	61	49211										
KAT2B	0	genome.wustl.edu	37	chr3	20161094	20161094	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ccttttgccggggcagttatCaatccacctcctgtggctgg	11	13	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	20161094	20161094	C	A	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	silent	c.1155	p.I385	1.000	pirsf_Hist_acetylase_PCAF	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	117	0	0	130	16	10.96	-	-	-	A	20161094	C	A	20161094	2	1	556	1	0	0	0	0	0	0	0	1	8036	816	29	2		2	KAT2B	3	20161094	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		20161094	177861336	62	49212										
GLB1	0	genome.wustl.edu	37	chr3	33059951	33059951	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gattcttaccccatccacagCaacatatgctcgatcgtgga	7	13	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	33059951	33059951	C	G	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.1480	p.A494P	0.056	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	113	0	0	51	24	32	-	-	-	G	33059951	C	G	33059951	3	3	556	1	0	0	0	0	1	0	0	0	6479	710	25	4	713	4	GLB1	3	33059951	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	12898857	33059951	164962479	63	49213										
GOLGA4	0	genome.wustl.edu	37	chr3	37369998	37369998	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agctggcacaaaaggaacaaGagctggaaatgaccataaaa	10	7	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	37369998	37369998	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.6031	p.E2011K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	135	0	0	150	40	21.05	-	-	-	A	37369998	G	A	37369998	3	1	556	1	0	0	0	0	1	0	0	0	6607	943	33	2	6159	2	GOLGA4	3	37369998	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	4310047	37369998	160652432	64	49214										
CTDSPL	0	genome.wustl.edu	37	chr3	38006086	38006086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cagctaagtaccttcttccaGaggtgacggtgcttgactat	10	10	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	38006086	38006086	G	A	SNP	CTDSPL	ENST00000273179	human	ensembl	69_37n	1	known	missense	c.292	p.E98K	1.000	superfamily_HAD-like_dom	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL	HGNC	ENSG00000144677	146	0	0	127	39	23.49	-	-	-	A	38006086	G	A	38006086	3	1	556	1	0	0	0	0	1	0	0	0	4037	943	33	2	306	2	CTDSPL	3	38006086	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	636088	38006086	160016344	65	49215										
SCN11A	0	genome.wustl.edu	37	chr3	38968358	38968358	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaggaaagaaaactcatccaGaatgaaacctcttgccaata	6	9	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	38968358	38968358	G	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.553	p.L185V	0.575	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	111	0	0	123	31	20.13	-	-	-	C	38968358	G	C	38968358	3	2	556	1	0	0	0	0	1	0	0	0	14001	933	33	2	4914	2	SCN11A	3	38968358	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	962272	38968358	159054072	66	49216										
SMARCC1	0	genome.wustl.edu	37	chr3	47680259	47680259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtcggcttccattttttcctCttcagctccttctacaagta	5	13	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	47680259	47680259	C	G	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2332	p.E778Q	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	169	0	0	169	54	24.22	-	-	-	G	47680259	C	G	47680259	3	3	556	1	0	0	0	0	1	0	0	0	14864	922	32	2	1013	2	SMARCC1	3	47680259	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	8711901	47680259	150342171	67	49217										
TFDP2	0	genome.wustl.edu	37	chr3	141671859	141671859	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agaaggtcctgtggagatatCtaaaggaaaaaatgagaaca	11	4	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	141671859	141671859	C	G	SNP	TFDP2	ENST00000489671	human	ensembl	69_37n	-1	known	splice_site	c.1052-1	e11-1	1.000	-	-	-	no_errors	TFDP2	HGNC	ENSG00000114126	78	0	0	101	29	22.31	-	-	-	G	141671859	C	G	141671859	5	3	556	1	0	0	0	0	0	0	1	0	15893	927	32	2	297	2	TFDP2	3	141671859	Splice_Site	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	93991600	141671859	56350571	68	49218										
C3orf33	0	genome.wustl.edu	37	chr3	155493550	155493550	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcaatttctaaaccattctCagttattcggcgtaatcgtc	5	10	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	155493550	155493550	C	G	SNP	C3orf33	ENST00000340171	human	ensembl	69_37n	-1	known	missense	c.262	p.E88Q	0.805	superfamily_Staphylococal_nuclease_OB-fold	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928	100	0	0	200	46	18.7	-	-	-	G	155493550	C	G	155493550	3	3	556	1	0	0	0	0	1	0	0	0	2243	835	29	2	634	2	C3orf33	3	155493550	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	13821691	155493550	42528880	69	49219										
KPNA4	0	genome.wustl.edu	37	chr3	160225904	160225904	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aataaacttacctccacattCttctataagattgcctatgg	4	10	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	160225904	160225904	C	G	SNP	KPNA4	ENST00000334256	human	ensembl	69_37n	-1	known	missense	c.1363	p.E455Q	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA4	HGNC	ENSG00000186432	124	0	0	196	44	18.33	-	-	-	G	160225904	C	G	160225904	3	3	556	1	0	0	0	0	1	0	0	0	8485	922	32	2	214	2	KPNA4	3	160225904	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4732354	160225904	37796526	70	49220										
YEATS2	0	genome.wustl.edu	37	chr3	183432996	183432996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aagaaaccgaccctgattacGaggatgtatctgtggccctt	10	10	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	183432996	183432996	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.46	p.E16K	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	155	0	0	137	40	22.6	-	-	-	A	183432996	G	A	183432996	3	1	556	1	0	0	0	0	1	0	0	0	17569	1059	37	1	48	1	YEATS2	3	183432996	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	23207092	183432996	14589434	71	49221										
RTP4	0	genome.wustl.edu	37	chr3	187088789	187088789	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aacctggtgcagcatatactGaagaaatactatggaaatgg	10	6	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	187088789	187088789	G	A	SNP	RTP4	ENST00000259030	human	ensembl	69_37n	1	known	silent	c.369	p.L123	0.012	NULL	NULL	-	no_errors	RTP4	HGNC	ENSG00000136514	80	0	0	27	12	30.77	-	-	-	A	187088789	G	A	187088789	2	1	556	1	0	0	0	0	0	0	0	1	13822	1277	45	2		2	RTP4	3	187088789	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	3655793	187088789	10933641	72	49222										
MFI2	0	genome.wustl.edu	37	chr3	196736612	196736612	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcgcttgccccgaagctcatCcaaggtgaaggcgtgggagc	15	12	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	3	196736612	196736612	C	A	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.1402	p.D468Y	0.810	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	33	0	0	13	3	18.75	-	-	-	A	196736612	C	A	196736612	3	1	556	1	0	0	0	0	1	0	0	0	9593	855	30	2	838	2	MFI2	3	196736612	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	9647823	196736612	1285818	73	49223										
PROM1	0	genome.wustl.edu	37	chr4	16010727	16010727	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atggaattcaagacccttttGatacctgaaaacaaagatac	6	8	1	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	16010727	16010727	G	C	SNP	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	missense	c.1146	p.I382M	0.956	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	113	0	0	138	16	10.39	-	-	-	C	16010727	G	C	16010727	3	2	556	1	0	0	0	0	1	0	0	0	12636	1280	45	2	1515	2	PROM1	4	16010727	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		16010727	175143549	74	49224										
CHRNA9	0	genome.wustl.edu	37	chr4	40351124	40351124	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agcggagatctctctgacttCattgaagatgtggaatggga	13	6	3	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	40351124	40351124	C	T	SNP	CHRNA9	ENST00000310169	human	ensembl	69_37n	1	known	silent	c.591	p.F197	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343	140	0	0	57	19	25	-	-	-	T	40351124	C	T	40351124	2	4	556	1	0	0	0	0	0	0	0	1	3418	825	29	2		2	CHRNA9	4	40351124	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	24340397	40351124	150803152	75	49225										
BMP2K	0	genome.wustl.edu	37	chr4	79831828	79831828	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aatggcactgcaaaccctatCaagaacggtaaaacaagtcc	7	11	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	79831828	79831828	C	G	SNP	BMP2K	ENST00000335016	human	ensembl	69_37n	1	known	missense	c.2127	p.I709M	0.004	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	94	0	0	122	27	18.12	-	-	-	G	79831828	C	G	79831828	3	3	556	1	0	0	0	0	1	0	0	0	1465	816	29	2	2227	2	BMP2K	4	79831828	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	39480704	79831828	111322448	76	49226										
WDFY3	0	genome.wustl.edu	37	chr4	85638146	85638146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tagggccttgcctggctcctCtaggaataataggctcatgc	11	11	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	85638146	85638146	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.7778	p.R2593T	0.993	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	82	0	0	113	21	15.67	-	-	-	G	85638146	C	G	85638146	3	3	556	1	0	0	0	0	1	0	0	0	17367	913	32	2	2882	2	WDFY3	4	85638146	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	5806318	85638146	105516130	77	49227										
AFF1	0	genome.wustl.edu	37	chr4	87968288	87968288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cttcggtgacagattcggctCcagagagggagctttctccc	12	12	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	87968288	87968288	C	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.601	p.P201S	0.002	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	94	0	0	42	11	20.75	-	-	-	T	87968288	C	T	87968288	3	4	556	1	0	0	0	0	1	0	0	0	356	855	30	2	632	2	AFF1	4	87968288	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2330142	87968288	103185988	78	49228										
DSPP	0	genome.wustl.edu	37	chr4	88537602	88537602	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgatagcagtgacagcacatCtgacagcaatgatgagagtg	12	7	1	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	88537602	88537602	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.3788	p.S1263F	0.993	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	232	0	0	117	35	23.03	-	-	-	T	88537602	C	T	88537602	3	4	556	1	0	0	0	0	1	0	0	0	4817	913	32	2	3802	2	DSPP	4	88537602	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	569314	88537602	102616674	79	49229										
TMEM155	0	genome.wustl.edu	37	chr4	122682808	122682808	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attttctctcttattctgtaGaatcgcaccagatggcatca	6	10	4	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	4	122682808	122682808	G	A	SNP	TMEM155	ENST00000337677	human	ensembl	69_37n	-1	known	silent	c.97	p.L33	0.090	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112	109	0	0	145	49	25.26	-	-	-	A	122682808	G	A	122682808	2	1	556	1	0	0	0	0	0	0	0	1	16167	933	33	2		2	TMEM155	4	122682808	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	34145206	122682808	68471468	80	49230										
LIFR	0	genome.wustl.edu	37	chr5	38493737	38493737	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttacagtttcagtgctgtttGagggaacttttctccagtcc	9	9	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	38493737	38493737	G	A	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	missense	c.2036	p.S679L	0.982	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	108	0	0	104	20	16.13	-	-	-	A	38493737	G	A	38493737	3	1	556	1	0	0	0	0	1	0	0	0	8835	1294	45	2	1285	2	LIFR	5	38493737	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		38493737	142421523	81	49231										
OXCT1	0	genome.wustl.edu	37	chr5	41731843	41731843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tccatatttcaatttgcgatCtgctgcattggcatgagttt	8	8	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	41731843	41731843	C	G	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1551	p.Q517H	1.000	pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	91	0	0	155	35	18.42	-	-	-	G	41731843	C	G	41731843	3	3	556	1	0	0	0	0	1	0	0	0	11402	912	32	2	15	2	OXCT1	5	41731843	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3238106	41731843	139183417	82	49232										
SLC30A5	0	genome.wustl.edu	37	chr5	68419174	68419174	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttctcagtgttgttccactGattaaagatgcctgccaggt	9	9	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	68419174	68419174	G	A	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	silent	c.1920	p.L640	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	108	0	0	142	33	18.86	-	-	-	A	68419174	G	A	68419174	2	1	556	1	0	0	0	0	0	0	0	1	14647	1277	45	2		2	SLC30A5	5	68419174	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	26687331	68419174	112496086	83	49233										
DMXL1	0	genome.wustl.edu	37	chr5	118468832	118468832	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctcttttgcttatagaaactGatgatggtgttgatgatctg	10	5	2	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	118468832	118468832	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.1321	p.D441N	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	87	0	0	127	37	22.56	-	-	-	A	118468832	G	A	118468832	3	1	556	1	0	0	0	0	1	0	0	0	4630	1290	45	2	1363	2	DMXL1	5	118468832	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	50049658	118468832	62446428	84	49234										
KDM3B	0	genome.wustl.edu	37	chr5	137721882	137721882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtaatgggagcgatggaggtGaggcaagccgagggccctgg	20	7	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	137721882	137721882	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.952	p.E318K	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	175	0	0	100	30	23.08	-	-	-	A	137721882	G	A	137721882	3	1	556	1	0	0	0	0	1	0	0	0	8181	1291	45	2	978	2	KDM3B	5	137721882	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	19253050	137721882	43193378	85	49235										
TNIP1	0	genome.wustl.edu	37	chr5	150439923	150439923	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctctggtgaattctgctcctCaggagtgaccacttcaaatt	8	11	4	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	150439923	150439923	C	T	SNP	TNIP1	ENST00000315050	human	ensembl	69_37n	-1	known	missense	c.391	p.E131K	0.992	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901	80	0	0	29	11	27.5	-	-	-	T	150439923	C	T	150439923	3	4	556	1	0	0	0	0	1	0	0	0	16409	835	29	2	1575	2	TNIP1	5	150439923	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	12718041	150439923	30475337	86	49236										
ITK	0	genome.wustl.edu	37	chr5	156672782	156672782	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaaccaagtcatcaaggtgtCtgactttgggatgacaaggt	11	7	3	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	156672782	156672782	C	T	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.1496	p.S499F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	185	0	0	102	36	26.09	-	-	-	T	156672782	C	T	156672782	3	4	556	1	0	0	0	0	1	0	0	0	7963	913	32	2	1550	2	ITK	5	156672782	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	6232859	156672782	24242478	87	49237										
C1QTNF2	0	genome.wustl.edu	37	chr5	159776212	159776212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	catcctggtcggcatagattAggaagcccgtaaagaggctg	13	9	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	159776212	159776212	A	T	SNP	C1QTNF2	ENST00000393975	human	ensembl	69_37n	-1	known	missense	c.956	p.L319Q	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861	71	0	0	17	5	22.73	-	-	-	T	159776212	A	T	159776212	3	4	556	1	0	0	0	0	1	0	0	0	1982	420	15	5	40	5	C1QTNF2	5	159776212	Missense_Mutation	SNP	A	TCGA-BH-A0HP-01A-12D-A099-09	3103430	159776212	21139048	88	49238										
SNCB	0	genome.wustl.edu	37	chr5	176048277	176048277	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gggctcaatcagtggttcttCagcagcttcctgggccactt	11	12	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	5	176048277	176048277	C	T	SNP	SNCB	ENST00000310112	human	ensembl	69_37n	-1	known	missense	c.310	p.E104K	1.000	pfam_Synuclein,prints_Synuclein_beta	pfam_Synuclein,prints_Synuclein,prints_Synuclein_beta	-	no_errors	SNCB	HGNC	ENSG00000074317	87	0	0	41	11	21.15	-	-	-	T	176048277	C	T	176048277	3	4	556	1	0	0	0	0	1	0	0	0	14931	835	29	2	102	2	SNCB	5	176048277	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	16272065	176048277	4866983	89	49239										
RIPK1	0	genome.wustl.edu	37	chr6	3085612	3085612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcatgaagctctgctgggaaGcgaatccggaagctcggccg	14	11	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	3085612	3085612	G	T	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	missense	c.808	p.A270S	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	67	0	0	31	15	32.61	-	-	-	T	3085612	G	T	3085612	3	4	556	1	0	0	0	0	1	0	0	0	13466	971	34	4	826	4	RIPK1	6	3085612	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		3085612	168029455	90	49240										
MDC1	0	genome.wustl.edu	37	chr6	30671702	30671702	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctccccatctttggttccttGaggcctgggatttaggttcc	10	12	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	30671702	30671702	G	C	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	nonsense	c.5258	p.S1753*	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	92	0	0	67	8	10.53	-	-	-	C	30671702	G	C	30671702	4	2	556	1	0	0	0	0	0	1	0	0	9474	1294	45	2	1035	2	MDC1	6	30671702	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	27586090	30671702	140443365	91	49241										
TAP1	0	genome.wustl.edu	37	chr6	32816574	32816574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actcaaatattttctctgagGagcccacagccttctgtact	6	12	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	32816574	32816574	G	T	SNP	TAP1	ENST00000354258	human	ensembl	69_37n	-1	known	missense	c.1601	p.S534Y	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_ABC_B2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394	219	0	0	114	14	10.94	-	-	-	T	32816574	G	T	32816574	3	4	556	1	0	0	0	0	1	0	0	0	15642	1174	41	2	845	2	TAP1	6	32816574	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2144872	32816574	138298493	92	49242										
POLH	0	genome.wustl.edu	37	chr6	43550143	43550143	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cagcggcaaaatcctcatttGaggaataaaccttgtgcagt	9	9	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	43550143	43550143	G	C	SNP	POLH	ENST00000372236	human	ensembl	69_37n	1	known	missense	c.87	p.L29F	1.000	pfam_DNA_repair_prot_UmuC-like,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734	189	0	0	137	40	22.47	-	-	-	C	43550143	G	C	43550143	3	2	556	1	0	0	0	0	1	0	0	0	12276	1281	45	2	89	2	POLH	6	43550143	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	10733569	43550143	127564924	93	49243										
PHIP	0	genome.wustl.edu	37	chr6	79672892	79672892	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attggtaccccattctccatCaagaggtttatagattagtg	8	8	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	79672892	79672892	C	T	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.3457	p.D1153N	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	160	0	0	167	57	25.33	-	-	-	T	79672892	C	T	79672892	3	4	556	1	0	0	0	0	1	0	0	0	11916	826	29	2	2052	2	PHIP	6	79672892	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	36122749	79672892	91442175	94	49244										
GRIK2	0	genome.wustl.edu	37	chr6	102124653	102124653	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	taatctttgattgtagccatGaaatggcagcaggcatttta	9	6	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	102124653	102124653	G	A	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.697	p.E233K	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	121	0	0	121	31	20.39	-	-	-	A	102124653	G	A	102124653	3	1	556	1	0	0	0	0	1	0	0	0	6825	1291	45	2	711	2	GRIK2	6	102124653	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	22451761	102124653	68990414	95	49245										
SLC22A16	0	genome.wustl.edu	37	chr6	110763662	110763662	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggtccagtgataaaagttctGacagtttacaggagcttgcc	11	8	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	110763662	110763662	G	A	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.968	p.S323L	0.906	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	121	0	0	110	28	20.29	-	-	-	A	110763662	G	A	110763662	3	1	556	1	0	0	0	0	1	0	0	0	14536	1294	45	2	785	2	SLC22A16	6	110763662	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	8639009	110763662	60351405	96	49246										
TAAR9	0	genome.wustl.edu	37	chr6	132859522	132859522	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctccttactcgccaggtcctCgatctatcctctacgccgtc	6	18	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	6	132859522	132859522	C	T	SNP	TAAR9	ENST00000434551	human	ensembl	69_37n	1	known	nonsense	c.94	p.R32*	0.076	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAAR9	HGNC	ENSG00000237110	117	0	0	100	27	21.26	-	-	-	T	132859522	C	T	132859522	4	4	556	1	0	0	0	0	0	1	0	0	15586	876	31	1	96	1	TAAR9	6	132859522	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	22095860	132859522	38255545	97	49247										
THSD7A	0	genome.wustl.edu	37	chr7	11676040	11676040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtacctgagctcctcggcctCgcatggactggattggcaca	12	13	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	11676040	11676040	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.739	p.E247K	0.606	smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	86	0	0	159	32	16.75	-	-	-	T	11676040	C	T	11676040	3	4	556	1	0	0	0	0	1	0	0	0	15974	893	31	1	4338	1	THSD7A	7	11676040	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		11676040	147462623	98	49248										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26237271	26237271	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgtaagctttccccattgttCgtagtagttcctcaaacttt	6	10	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	26237271	26237271	C	G	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.124	p.E42Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	182	0	0	250	46	15.54	-	-	-	G	26237271	C	G	26237271	3	3	556	1	0	0	0	0	1	0	0	0	7310	893	31	3	973	3	HNRNPA2B1	7	26237271	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	14561231	26237271	132901392	99	49249										
ABCA13	0	genome.wustl.edu	37	chr7	48427518	48427518	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaggcaatactttctaagttCtagtctgttcttcttcaatg	6	8	6	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	48427518	48427518	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.11435	p.S3812F	0.093	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	246	0	0	296	73	19.78	-	-	-	T	48427518	C	T	48427518	3	4	556	1	0	0	0	0	1	0	0	0	31	913	32	2	11406	2	ABCA13	7	48427518	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	22190247	48427518	110711145	100	49250										
MAGI2	0	genome.wustl.edu	37	chr7	77789382	77789382	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggcctgttcagggagctgatGatgacaaagccgaagccctc	13	11	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	77789382	77789382	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	silent	c.2805	p.I935	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	100	0	0	46	7	13.21	-	-	-	A	77789382	G	A	77789382	2	1	556	1	0	0	0	0	0	0	0	1	9262	1280	45	2		2	MAGI2	7	77789382	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	29361864	77789382	81349281	101	49251										
AP4M1	0	genome.wustl.edu	37	chr7	99701112	99701112	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gctgtggtcagcaagcccttCagcctctttgacctcagcag	10	14	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	99701112	99701112	C	T	SNP	AP4M1	ENST00000416938	human	ensembl	69_37n	1	known	nonsense	c.388	p.Q130*	1.000	NULL	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AP4M1	HGNC	ENSG00000221838	125	0	0	45	15	25	-	-	-	T	99701112	C	T	99701112	4	4	556	1	0	0	0	0	0	1	0	0	754	825	29	2	450	2	AP4M1	7	99701112	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	21911730	99701112	59437551	102	49252										
CDHR3	0	genome.wustl.edu	37	chr7	105662855	105662855	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtgacactgagtattaaagtCattccccacccaaccactat	5	13	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	105662855	105662855	C	T	SNP	CDHR3	ENST00000468477	human	ensembl	69_37n	1	novel	missense	c.443	p.S148L	0.998	superfamily_Cadherin-like,pfscan_Cadherin	superfamily_Cadherin-like,pfscan_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDHR3	HGNC	ENSG00000128536	103	0	0	146	50	25.38	-	-	-	T	105662855	C	T	105662855	3	4	556	1	0	0	0	0	1	0	0	0	3149	813	29	2	2091	2	CDHR3	7	105662855	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	5961743	105662855	53475808	103	49253										
TTC26	0	genome.wustl.edu	37	chr7	138865859	138865859	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tattatgaataagaaaccaaGactagcctgggaactttatc	7	7	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	7	138865859	138865859	G	C	SNP	TTC26	ENST00000464848	human	ensembl	69_37n	1	known	missense	c.1334	p.R445T	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948	131	0	0	100	31	23.66	-	-	-	C	138865859	G	C	138865859	3	2	556	1	0	0	0	0	1	0	0	0	16791	942	33	2	1396	2	TTC26	7	138865859	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	33203004	138865859	20272804	104	49254										
FAM160B2	0	genome.wustl.edu	37	chr8	21957402	21957402	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attgtgaccacctctctgatGaggtacagtgggggacctcc	12	11	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	21957402	21957402	G	A	SNP	FAM160B2	ENST00000289921	human	ensembl	69_37n	1	known	missense	c.1339	p.E447K	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B2	HGNC	ENSG00000158863	37	0	0	15	3	16.67	-	-	-	A	21957402	G	A	21957402	3	1	556	1	0	0	0	0	1	0	0	0	5511	1291	45	2	1176	2	FAM160B2	8	21957402	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		21957402	124406620	105	49255										
RGS20	0	genome.wustl.edu	37	chr8	54852243	54852243	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcggggagtcgcgggtccaaCgcatgctgcttctgctggtg	17	11	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	54852243	54852243	C	T	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	1	known	silent	c.618	p.N206	0.272	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	128	0	0	17	9	33.33	-	-	-	T	54852243	C	T	54852243	2	4	556	1	0	0	0	0	0	0	0	1	13387	535	19	1		1	RGS20	8	54852243	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	32894841	54852243	91511779	106	49256										
TCEA1	0	genome.wustl.edu	37	chr8	54897032	54897032	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttgatatcctacttcgtactCtatttttgtatttcatgtct	4	8	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	54897032	54897032	C	G	SNP	TCEA1	ENST00000521604	human	ensembl	69_37n	-1	known	missense	c.569	p.R190T	1.000	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735	155	0	0	245	55	18.33	-	-	-	G	54897032	C	G	54897032	3	3	556	1	0	0	0	0	1	0	0	0	15762	913	32	2	352	2	TCEA1	8	54897032	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	44789	54897032	91466990	107	49257										
ZBTB10	0	genome.wustl.edu	37	chr8	81412521	81412521	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaagatttatttataatattCcacctaataatgaaacgaat	3	5	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	81412521	81412521	C	G	SNP	ZBTB10	ENST00000426744	human	ensembl	69_37n	1	known	missense	c.1765	p.P589A	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189	57	0	0	33	8	19.51	-	-	-	G	81412521	C	G	81412521	3	3	556	1	0	0	0	0	1	0	0	0	17619	855	30	2	1771	2	ZBTB10	8	81412521	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	26515489	81412521	64951501	108	49258										
LRP12	0	genome.wustl.edu	37	chr8	105503585	105503585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcaggttctctactggtactCtgactagggacaacctcatc	8	12	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	105503585	105503585	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	silent	c.1839	p.Q613	0.938	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	97	0	0	110	37	25.17	-	-	-	T	105503585	C	T	105503585	2	4	556	1	0	0	0	0	0	0	0	1	9020	912	32	2		2	LRP12	8	105503585	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	24091064	105503585	40860437	109	49259										
ENPP2	0	genome.wustl.edu	37	chr8	120598503	120598503	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttggcatagtgcaaacgtttGggaaggtgctgtttcaagta	13	5	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	120598503	120598503	G	C	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	silent	c.1446	p.P482	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	217	0	0	169	44	20.66	-	-	-	C	120598503	G	C	120598503	2	2	556	1	0	0	0	0	0	0	0	1	5167	1335	47	4		4	ENPP2	8	120598503	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	15094918	120598503	25765519	110	49260										
ZHX1	0	genome.wustl.edu	37	chr8	124266322	124266322	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctcttcctttaaagcttttGatttcttcttctctgtaaac	3	10	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	124266322	124266322	G	C	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	nonsense	c.1865	p.S622*	0.638	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	238	0	0	288	60	17.24	-	-	-	C	124266322	G	C	124266322	4	2	556	1	0	0	0	0	0	1	0	0	17771	1294	45	2	760	2	ZHX1	8	124266322	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	3667819	124266322	22097700	111	49261										
LRRC6	0	genome.wustl.edu	37	chr8	133637540	133637540	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	taatttttcctgtttcttccGttgtttttccatgtgtctaa	5	8	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	133637540	133637540	G	C	SNP	LRRC6	ENST00000250173	human	ensembl	69_37n	-1	known	missense	c.814	p.R272G	0.992	NULL	superfamily_HSP20-like_chaperone,smart_U2A'_phosphoprotein32A_C,pfscan_CS-like_domain	-	no_errors	LRRC6	HGNC	ENSG00000129295	349	0	0	350	88	20.09	-	-	-	C	133637540	G	C	133637540	3	2	556	1	0	0	0	0	1	0	0	0	9082	1144	40	3	614	3	LRRC6	8	133637540	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	9371218	133637540	12726482	112	49262										
PUF60	0	genome.wustl.edu	37	chr8	144900366	144900366	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttggctccctgcctcaccttGatgttcctgccccccagcat	7	18	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	8	144900366	144900366	G	A	SNP	PUF60	ENST00000532884	human	ensembl	69_37n	-1	putative	missense	c.194	p.S65L	0.992	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon	PUF60	HGNC	ENSG00000179950	38	0	0	14	2	12.5	-	-	-	A	144900366	G	A	144900366	3	1	556	1	0	0	0	0	1	0	0	0	12907	1280	45	2	1103	2	PUF60	8	144900366	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	11262826	144900366	1463656	113	49263										
KIAA1432	0	genome.wustl.edu	37	chr9	5762597	5762597	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggacagctcatcatgatgcaGagggacaggtcaggcccaca	13	11	3	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	9	5762597	5762597	G	A	SNP	KIAA1432	ENST00000545641	human	ensembl	69_37n	1	novel	missense	c.1723	p.E575K	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1432	HGNC	ENSG00000107036	138	0	0	68	17	20	-	-	-	A	5762597	G	A	5762597	3	1	556	1	0	0	0	0	1	0	0	0	8285	933	33	2	1878	2	KIAA1432	9	5762597	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		5762597	135450834	114	49264										
SMC5	0	genome.wustl.edu	37	chr9	72913049	72913049	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gatgccattacaaatgatctGagacggattcaggatgaaaa	10	6	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	9	72913049	72913049	G	C	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	silent	c.1221	p.L407	0.999	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	117	0	0	156	48	23.53	-	-	-	C	72913049	G	C	72913049	2	2	556	1	0	0	0	0	0	0	0	1	14875	1277	45	2		2	SMC5	9	72913049	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	67150452	72913049	68300382	115	49265										
ORM2	0	genome.wustl.edu	37	chr9	117092822	117092822	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actttacccccaacaagacaGaggacacgatctttctcaga	6	13	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	9	117092822	117092822	G	C	SNP	ORM2	ENST00000431067	human	ensembl	69_37n	1	known	missense	c.223	p.E75Q	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM2	HGNC	ENSG00000228278	160	0	0	138	43	23.76	-	-	-	C	117092822	G	C	117092822	3	2	556	1	0	0	0	0	1	0	0	0	11341	943	33	2	229	2	ORM2	9	117092822	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	44179773	117092822	24120609	116	49266										
OR1L4	0	genome.wustl.edu	37	chr9	125487177	125487177	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gatatgaaaaggggtttgaaGaaattaagacacagaattta	10	2	0	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	9	125487177	125487177	G	A	SNP	OR1L4	ENST00000259466	human	ensembl	69_37n	1	known	silent	c.909	p.K303	0.089	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1L4	HGNC	ENSG00000136939	68	0	0	44	7	13.73	-	-	-	A	125487177	G	A	125487177	2	1	556	1	0	0	0	0	0	0	0	1	11038	933	33	2		2	OR1L4	9	125487177	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	8394355	125487177	15726254	117	49267										
ABCA2	0	genome.wustl.edu	37	chr9	139904093	139904093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtccatgcctgtggtgggctCgtcctggggatgggtggcag	19	9	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	9	139904093	139904093	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	69_37n	-1	known	missense	c.6634	p.E2212K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331	59	0	0	9	4	30.77	-	-	-	T	139904093	C	T	139904093	3	4	556	1	0	0	0	0	1	0	0	0	32	893	31	1	700	1	ABCA2	9	139904093	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	14416916	139904093	1309338	118	49268										
AKR1C1	0	genome.wustl.edu	37	chr10	5014915	5014915	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcctggccaagagctacaatGagcagcgcatcagacagaac	10	12	1	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	5014915	5014915	G	A	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	1	known	missense	c.820	p.E274K	0.331	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	202	0	0	40	15	27.27	-	-	-	A	5014915	G	A	5014915	3	1	556	1	0	0	0	0	1	0	0	0	469	1291	45	2	846	2	AKR1C1	10	5014915	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		5014915	130519832	119	49269										
GATA3	0	genome.wustl.edu	37	chr10	8106058	8106058	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctgcgggctctatcacaaaaTgaacggacagaaccggcccc	10	14	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	8106058	8106058	T	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.881	p.M294K	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	116	0	0	57	19	25	-	-	-	A	8106058	T	A	8106058	3	1	556	1	0	0	0	0	1	0	0	0	6305	1464	51	5	891	5	GATA3	10	8106058	Missense_Mutation	SNP	T	TCGA-BH-A0HP-01A-12D-A099-09	3091143	8106058	127428689	120	49270										
FRMD4A	0	genome.wustl.edu	37	chr10	13838563	13838563	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atgttccaatactcttcgatCtagctgaagccagtttaagt	7	9	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	13838563	13838563	C	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.232	p.D78Y	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	147	0	0	126	41	24.55	-	-	-	A	13838563	C	A	13838563	3	1	556	1	0	0	0	0	1	0	0	0	6100	913	32	2	2967	2	FRMD4A	10	13838563	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	5732505	13838563	121696184	121	49271										
KIF5B	0	genome.wustl.edu	37	chr10	32344886	32344886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	catcactttgatgttgcactCggccaggtccgccatctttc	8	14	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	32344886	32344886	C	T	SNP	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	missense	c.16	p.E6K	1.000	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	17	0	0	3	3	50	-	-	-	T	32344886	C	T	32344886	3	4	556	1	0	0	0	0	1	0	0	0	8358	893	31	1	2975	1	KIF5B	10	32344886	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	18506323	32344886	103189861	122	49272										
A1CF	0	genome.wustl.edu	37	chr10	52595854	52595854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctggtagcagtttcctcctcGccatggcagctgctcgatga	11	13	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	52595854	52595854	G	A	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	missense	c.584	p.A195V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	98	0	0	43	22	33.85	-	-	-	A	52595854	G	A	52595854	3	1	556	1	0	0	0	0	1	0	0	0	2	1087	38	1	1232	1	A1CF	10	52595854	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	20250968	52595854	82938893	123	49273										
ZWINT	0	genome.wustl.edu	37	chr10	58120134	58120134	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttccaagatgcctgccacctCagccaggaccctggaggggc	12	15	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	58120134	58120134	C	T	SNP	ZWINT	ENST00000373944	human	ensembl	69_37n	-1	known	missense	c.52	p.E18K	0.000	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952	62	0	0	16	3	15.79	-	-	-	T	58120134	C	T	58120134	3	4	556	1	0	0	0	0	1	0	0	0	18340	835	29	2	809	2	ZWINT	10	58120134	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	5524280	58120134	77414613	124	49274										
ANK3	0	genome.wustl.edu	37	chr10	61815778	61815778	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gagatatgaggtaatggaatCtctacactggtcagggctgc	13	7	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	61815778	61815778	C	G	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.12703	p.D4235H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	104	0	0	151	31	17.03	-	-	-	G	61815778	C	G	61815778	3	3	556	1	0	0	0	0	1	0	0	0	622	913	32	2	438	2	ANK3	10	61815778	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3695644	61815778	73718969	125	49275										
ADAMTS14	0	genome.wustl.edu	37	chr10	72462167	72462167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggaggacacatgtggtgtacCgccgggaggccgtccagcag	17	11	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	72462167	72462167	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.622	p.R208C	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	53	0	0	11	3	21.43	-	-	-	T	72462167	C	T	72462167	3	4	556	1	0	0	0	0	1	0	0	0	259	652	23	1	632	1	ADAMTS14	10	72462167	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	10646389	72462167	63072580	126	49276										
PTEN	0	genome.wustl.edu	37	chr10	89712018	89712018	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttcagtggcggaacttgcagTaagtgcttgaaattctcatc	10	8	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	89712018	89712018	T	C	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	splice_site	c.634+2	e6+2	1.000	-	-	-	no_errors	PTEN	HGNC	ENSG00000171862	79	0	0	105	47	30.92	-	-	-	C	89712018	T	C	89712018	5	2	556	1	0	0	0	0	0	0	1	0	12818	1652	57	5	658	5	PTEN	10	89712018	Splice_Site	SNP	T	TCGA-BH-A0HP-01A-12D-A099-09	17249851	89712018	45822729	127	49277										
IDE	0	genome.wustl.edu	37	chr10	94230067	94230067	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtgcagccgtgacaggagctGaggtatgaaggccttaaggc	16	8	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	94230067	94230067	G	C	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.2152	p.Q718E	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	211	1	0.47	216	25	10.37	-	-	-	C	94230067	G	C	94230067	3	2	556	1	0	0	0	0	1	0	0	0	7547	1299	45	2	939	2	IDE	10	94230067	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	4518049	94230067	41304680	128	49278										
CYP2C18	0	genome.wustl.edu	37	chr10	96447986	96447986	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggagcatcgaggaccgtgttCaagaggaagcccgctgcctt	14	11	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	96447986	96447986	C	T	SNP	CYP2C18	ENST00000285979	human	ensembl	69_37n	1	known	nonsense	c.436	p.Q146*	0.118	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242	281	0	0	226	29	11.37	-	-	-	T	96447986	C	T	96447986	4	4	556	1	0	0	0	0	0	1	0	0	4196	827	29	2	446	2	CYP2C18	10	96447986	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2217919	96447986	39086761	129	49279										
OPALIN	0	genome.wustl.edu	37	chr10	98108092	98108092	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttctgaaatttcacatggtCtgtcactttcctaaattgga	6	8	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	98108092	98108092	C	T	SNP	OPALIN	ENST00000371172	human	ensembl	69_37n	-1	known	missense	c.203	p.R68K	0.779	NULL	NULL	-	no_errors	OPALIN	HGNC	ENSG00000197430	95	0	0	151	30	16.57	-	-	-	T	98108092	C	T	98108092	3	4	556	1	0	0	0	0	1	0	0	0	10946	913	32	2	230	2	OPALIN	10	98108092	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1660106	98108092	37426655	130	49280										
TLL2	0	genome.wustl.edu	37	chr10	98205902	98205902	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgtggtgtctgggctgctctCagatgcctgctcttcaagcc	12	12	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	98205902	98205902	C	G	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.310	p.E104Q	0.038	pirsf_BMP_1/tolloid-like	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	217	0	0	163	45	21.63	-	-	-	G	98205902	C	G	98205902	3	3	556	1	0	0	0	0	1	0	0	0	16041	835	29	2	2813	2	TLL2	10	98205902	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	97810	98205902	37328845	131	49281										
CNNM2	0	genome.wustl.edu	37	chr10	104836880	104836880	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gccaacctgctcaacgaacaGaactgtgtgacgcacagtaa	9	12	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	104836880	104836880	G	A	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	1	known	silent	c.2574	p.Q858	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	59	0	0	23	9	28.12	-	-	-	A	104836880	G	A	104836880	2	1	556	1	0	0	0	0	0	0	0	1	3643	933	33	2		2	CNNM2	10	104836880	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	6630978	104836880	30697867	132	49282										
OR51D1	0	genome.wustl.edu	37	chr11	4661785	4661785	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaggctttcaacacctgcatCtcccacctctgtgctgttct	6	15	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	4661785	4661785	C	T	SNP	OR51D1	ENST00000357605	human	ensembl	69_37n	1	known	silent	c.765	p.I255	0.898	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51D1	HGNC	ENSG00000197428	171	0	0	125	33	20.89	-	-	-	T	4661785	C	T	4661785	2	4	556	1	0	0	0	0	0	0	0	1	11166	903	32	2		2	OR51D1	11	4661785	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		4661785	130344731	133	49283										
CSTF3	0	genome.wustl.edu	37	chr11	33107491	33107491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cattaaaacaacagctgcagGagggactgggaacactccac	10	11	0	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	33107491	33107491	G	A	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.1840	p.P614S	1.000	pfam_Suf	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	164	0	0	145	46	24.08	-	-	-	A	33107491	G	A	33107491	3	1	556	1	0	0	0	0	1	0	0	0	4018	1174	41	2	325	2	CSTF3	11	33107491	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	28445706	33107491	101899025	134	49284										
CREB3L1	0	genome.wustl.edu	37	chr11	46334219	46334219	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tatgtggagtgtctagaaaaGaagtaaggggcttgggaggg	18	2	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	46334219	46334219	G	C	SNP	CREB3L1	ENST00000288400	human	ensembl	69_37n	1	known	missense	c.960	p.K320N	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB3L1	HGNC	ENSG00000157613	84	0	0	35	4	10.26	-	-	-	C	46334219	G	C	46334219	3	2	556	1	0	0	0	0	1	0	0	0	3886	933	33	2	986	2	CREB3L1	11	46334219	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	13226728	46334219	88672297	135	49285										
PACSIN3	0	genome.wustl.edu	37	chr11	47201107	47201107	+	Missense_Mutation	SNP	C	C	T													0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tggagtgtagcgatgcagctCtgccagcgtctgctcatact							TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	47201107	47201107	C	T	SNP	PACSIN3	ENST00000298838	human	ensembl	69_37n	-1	known	missense	c.634	p.E212K	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,prints_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912	48	0	0	12	6	33.33	-	-	-	T	47201107	C	T	47201107	3	4	556	1	0	0	0	0	1	0	0	0	11449	922	32	2	660	2	PACSIN3	11	47201107	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	866888	47201107	87805409	136	49286	416	2								
PACSIN3	0	genome.wustl.edu	37	chr11	47201108	47201108	+	Silent	SNP	T	T	G													0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggagtgtagcgatgcagctcTgccagcgtctgctcatactg							TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	47201108	47201108	T	G	SNP	PACSIN3	ENST00000298838	human	ensembl	69_37n	-1	known	silent	c.633	p.A211	0.505	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,prints_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912	47	0	0	12	5	29.41	-	-	-	G	47201108	T	G	47201108	2	3	556	1	0	0	0	0	0	0	0	1	11449	1567	55	5		5	PACSIN3	11	47201108	Silent	SNP	T	TCGA-BH-A0HP-01A-12D-A099-09	1	47201108	87805408	137	49287	416	2								
PLAC1L	0	genome.wustl.edu	37	chr11	59810970	59810970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agttgctctctggactggttGatggtctcagttatcccagt	11	9	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	59810970	59810970	G	A	SNP	PLAC1L	ENST00000278855	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.102	NULL	NULL	-	no_errors	PLAC1L	HGNC	ENSG00000149507	184	0	0	218	53	19.56	-	-	-	A	59810970	G	A	59810970	2	1	556	1	0	0	0	0	0	0	0	1	12087	1281	45	2		2	PLAC1L	11	59810970	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	12609862	59810970	75195546	138	49288										
PPP1R14B	0	genome.wustl.edu	37	chr11	64012756	64012756	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctccagttctgggatctcctCttcctggggtgggggtgggg	17	10	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	64012756	64012756	C	T	SNP	PPP1R14B	ENST00000309318	human	ensembl	69_37n	-1	known	missense	c.262	p.E88K	1.000	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14B	HGNC	ENSG00000173457	61	0	0	18	2	10	-	-	-	T	64012756	C	T	64012756	3	4	556	1	0	0	0	0	1	0	0	0	12437	922	32	2	193	2	PPP1R14B	11	64012756	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4201786	64012756	70993760	139	49289										
USP28	0	genome.wustl.edu	37	chr11	113723334	113723334	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agtgagaaggctgactgcctGagtaatgtcaccattactgg	12	8	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	113723334	113723334	G	A	SNP	USP28	ENST00000003302	human	ensembl	69_37n	-1	known	nonsense	c.157	p.Q53*	1.000	superfamily_UBA-like	pfam_Peptidase_C19,superfamily_UBA-like,pfscan_Peptidase_C19	-	no_errors	USP28	HGNC	ENSG00000048028	58	0	0	25	12	32.43	-	-	-	A	113723334	G	A	113723334	4	1	556	1	0	0	0	0	0	1	0	0	17155	1299	45	2	3168	2	USP28	11	113723334	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	49710578	113723334	21283182	140	49290										
SIK3	0	genome.wustl.edu	37	chr11	116798097	116798097	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	accatgggccaccaggtggtCtgtgttgaagaagaatacag	13	8	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	116798097	116798097	C	A	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	splice_site	c.455-1	e4-1	1.000	-	-	-	no_errors	SIK3	HGNC	ENSG00000160584	153	0	0	117	49	29.52	-	-	-	A	116798097	C	A	116798097	5	1	556	1	0	0	0	0	0	0	1	0	14408	927	32	2	3591	2	SIK3	11	116798097	Splice_Site	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3074763	116798097	18208419	141	49291										
CDON	0	genome.wustl.edu	37	chr11	125871671	125871671	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aaaattgttgtttgcagcctCtgaaacaacgggatacttag	9	7	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	125871671	125871671	C	G	SNP	CDON	ENST00000392693	human	ensembl	69_37n	-1	known	missense	c.2101	p.E701Q	0.965	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CDON	HGNC	ENSG00000064309	326	0	0	108	23	17.56	-	-	-	G	125871671	C	G	125871671	3	3	556	1	0	0	0	0	1	0	0	0	3199	922	32	2	1733	2	CDON	11	125871671	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	9073574	125871671	9134845	142	49292										
ARHGAP32	0	genome.wustl.edu	37	chr11	128844843	128844843	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttctccattaaaagaggcaGacagtgcatcactggaagat	9	8	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	11	128844843	128844843	G	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	missense	c.2207	p.S736C	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	53	0	0	26	13	33.33	-	-	-	C	128844843	G	C	128844843	3	2	556	1	0	0	0	0	1	0	0	0	883	942	33	2	4068	2	ARHGAP32	11	128844843	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2973172	128844843	6161673	143	49293										
LAG3	0	genome.wustl.edu	37	chr12	6886451	6886451	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gactcccaaatcctttgggtCacctggatccctggggaagc	11	13	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	6886451	6886451	C	T	SNP	LAG3	ENST00000203629	human	ensembl	69_37n	1	known	missense	c.1079	p.S360L	0.001	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LAG3	HGNC	ENSG00000089692	65	0	0	33	19	36.54	-	-	-	T	6886451	C	T	6886451	3	4	556	1	0	0	0	0	1	0	0	0	8654	838	29	2	1101	2	LAG3	12	6886451	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		6886451	126965444	144	49294										
A2ML1	0	genome.wustl.edu	37	chr12	9001389	9001389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtatgatcagtgtccagtgtCtggcccatgggactttcctc	11	11	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	9001389	9001389	C	G	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.1907	p.S636C	0.165	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	89	0	0	59	18	23.38	-	-	-	G	9001389	C	G	9001389	3	3	556	1	0	0	0	0	1	0	0	0	5	913	32	2	1969	2	A2ML1	12	9001389	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2114938	9001389	124850506	145	49295										
DDX11	0	genome.wustl.edu	37	chr12	31249282	31249282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttggtttttgcaggtgcagcGatactgtgagaagagcatga	14	5	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	31249282	31249282	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.1490	p.R497Q	0.999	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	211	0	0	120	24	16.67	-	-	-	A	31249282	G	A	31249282	3	1	556	1	0	0	0	0	1	0	0	0	4374	1058	37	1	1544	1	DDX11	12	31249282	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	22247893	31249282	102602613	146	49296										
LIMA1	0	genome.wustl.edu	37	chr12	50616256	50616256	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctttctaaagtgctgggagaGattttcggtgttctagaaga	12	5	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	50616256	50616256	G	C	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.178	p.L60V	0.980	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	54	0	0	26	8	23.53	-	-	-	C	50616256	G	C	50616256	3	2	556	1	0	0	0	0	1	0	0	0	8851	942	33	2	2136	2	LIMA1	12	50616256	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	19366974	50616256	83235639	147	49297										
MON2	0	genome.wustl.edu	37	chr12	62954645	62954645	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctaagcctcctattacttttGataaactaacttttattcct	2	10	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	62954645	62954645	G	C	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	missense	c.3787	p.D1263H	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	235	0	0	180	50	21.65	-	-	-	C	62954645	G	C	62954645	3	2	556	1	0	0	0	0	1	0	0	0	9772	1290	45	2	3886	2	MON2	12	62954645	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	12338389	62954645	70897250	148	49298										
XPOT	0	genome.wustl.edu	37	chr12	64814203	64814203	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aagcatgtgactgtttatttGaagttgtaaataaaggaatg	10	2	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	64814203	64814203	G	C	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	missense	c.745	p.E249Q	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	318	0	0	221	45	16.92	-	-	-	C	64814203	G	C	64814203	3	2	556	1	0	0	0	0	1	0	0	0	17547	1291	45	2	771	2	XPOT	12	64814203	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	1859558	64814203	69037692	149	49299										
MGAT4C	0	genome.wustl.edu	37	chr12	86383282	86383282	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctcaggcatctcattttatCaagtatttcaaaaatatgtt	4	7	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	86383282	86383282	C	G	SNP	MGAT4C	ENST00000393205	human	ensembl	69_37n	-1	known	missense	c.130	p.D44H	1.000	superfamily_LSM_dom	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050	87	0	0	151	35	18.82	-	-	-	G	86383282	C	G	86383282	3	3	556	1	0	0	0	0	1	0	0	0	9618	826	29	2	1405	2	MGAT4C	12	86383282	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	21569079	86383282	47468613	150	49300										
ATP2B1	0	genome.wustl.edu	37	chr12	90005123	90005123	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgcacagtaattccagccctCtgacactttttaattgcatc	5	13	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	90005123	90005123	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	silent	c.2094	p.Q698	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	121	0	0	104	30	22.39	-	-	-	T	90005123	C	T	90005123	2	4	556	1	0	0	0	0	0	0	0	1	1143	912	32	2		2	ATP2B1	12	90005123	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3621841	90005123	43846772	151	49301										
APAF1	0	genome.wustl.edu	37	chr12	99042512	99042512	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tacatgaaggatataaagatCttgctgcccttctccatgat	7	9	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	99042512	99042512	C	T	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.247	p.L83F	1.000	pfam_CARD,superfamily_DEATH-like,pirsf_Apoptotic_pept-activating_1,pfscan_CARD	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	94	0	0	177	79	30.86	-	-	-	T	99042512	C	T	99042512	3	4	556	1	0	0	0	0	1	0	0	0	756	913	32	2	253	2	APAF1	12	99042512	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	9037389	99042512	34809383	152	49302										
UTP20	0	genome.wustl.edu	37	chr12	101776918	101776918	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aagaagacctggaagaacaaGaagctttagaagatggtgtg	13	4	0	6			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	101776918	101776918	G	A	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.7756	p.E2586K	0.005	NULL	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	175	0	0	136	44	24.44	-	-	-	A	101776918	G	A	101776918	3	1	556	1	0	0	0	0	1	0	0	0	17196	943	33	2	7990	2	UTP20	12	101776918	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2734406	101776918	32074977	153	49303										
FBXO21	0	genome.wustl.edu	37	chr12	117583909	117583909	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actttactcatctatgttctCtttctttgcactgtaaatat	3	9	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	117583909	117583909	C	T	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.1870	p.E624K	0.995	NULL	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	137	0	0	158	45	22.17	-	-	-	T	117583909	C	T	117583909	3	4	556	1	0	0	0	0	1	0	0	0	5779	922	32	2	20	2	FBXO21	12	117583909	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	15806991	117583909	16267986	154	49304										
SCARB1	0	genome.wustl.edu	37	chr12	125292447	125292447	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggatgccttcaaacacccctGactccttgtacattagcttc	6	14	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	125292447	125292447	G	T	SNP	SCARB1	ENST00000415380	human	ensembl	69_37n	-1	known	nonsense	c.869	p.S290*	0.002	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	45	0	0	17	3	15	-	-	-	T	125292447	G	T	125292447	4	4	556	1	0	0	0	0	0	1	0	0	13968	1294	45	2	808	2	SCARB1	12	125292447	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	7708538	125292447	8559448	155	49305										
TMEM132D	0	genome.wustl.edu	37	chr12	130015639	130015639	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gctgctttcttctgacaaacGatgacagctggtgcatactt	9	10	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	130015639	130015639	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	silent	c.1080	p.I360	0.030	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	79	0	0	47	6	11.32	-	-	-	A	130015639	G	A	130015639	2	1	556	1	0	0	0	0	0	0	0	1	16142	1048	37	1		1	TMEM132D	12	130015639	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	4723192	130015639	3836256	156	49306										
ANKLE2	0	genome.wustl.edu	37	chr12	133306539	133306539	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attttgcaaattcagtttatCaaactcaacagtcaaatccg	4	9	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	12	133306539	133306539	C	G	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.2209	p.D737H	1.000	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	82	0	0	146	26	15.12	-	-	-	G	133306539	C	G	133306539	3	3	556	1	0	0	0	0	1	0	0	0	633	826	29	2	619	2	ANKLE2	12	133306539	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3290900	133306539	545356	157	49307										
NEK5	0	genome.wustl.edu	37	chr13	52663415	52663415	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cactttcaacttatattgttGagcttcaaattttctctgaa	4	8	3	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	13	52663415	52663415	G	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	nonsense	c.1243	p.Q415*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	159	0	0	185	35	15.91	-	-	-	A	52663415	G	A	52663415	4	1	556	1	0	0	0	0	0	1	0	0	10399	1299	45	2	919	2	NEK5	13	52663415	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		52663415	62506463	158	49308										
SLAIN1	0	genome.wustl.edu	37	chr13	78327410	78327410	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cattagtagcaacattagttCtccggtcaccgtgcgaaata	8	10	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	13	78327410	78327410	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	1	known	missense	c.1265	p.S422F	0.997	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	112	0	0	109	27	19.85	-	-	-	T	78327410	C	T	78327410	3	4	556	1	0	0	0	0	1	0	0	0	14454	913	32	2	622	2	SLAIN1	13	78327410	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	25663995	78327410	36842468	159	49309										
EDDM3A	0	genome.wustl.edu	37	chr14	21216085	21216085	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	agtacaacaataggtacacaGagagcagaagcttcagctac	9	9	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	21216085	21216085	G	A	SNP	EDDM3A	ENST00000326842	human	ensembl	69_37n	1	known	missense	c.346	p.E116K	0.001	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562	106	0	0	101	19	15.83	-	-	-	A	21216085	G	A	21216085	3	1	556	1	0	0	0	0	1	0	0	0	4944	943	33	2	348	2	EDDM3A	14	21216085	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		21216085	86133455	160	49310										
PSMC6	0	genome.wustl.edu	37	chr14	53177881	53177881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gatatgactacactaactatCatgaggtgggtttcttattc	8	7	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	53177881	53177881	C	T	SNP	PSMC6	ENST00000556813	human	ensembl	69_37n	1	novel	missense	c.319	p.H107Y	0.998	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMC6	HGNC	ENSG00000100519	173	0	0	180	27	13.04	-	-	-	T	53177881	C	T	53177881	3	4	556	1	0	0	0	0	1	0	0	0	12771	816	29	2	381	2	PSMC6	14	53177881	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	31961796	53177881	54171659	161	49311										
EXOC5	0	genome.wustl.edu	37	chr14	57696455	57696455	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttacaatcactcttaccctAtgacatctttcaaaggcttg	4	11	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	57696455	57696455	A	G	SNP	EXOC5	ENST00000413566	human	ensembl	69_37n	-1	known	silent	c.1293	p.H431	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367	132	0	0	140	38	21.35	-	-	-	G	57696455	A	G	57696455	2	3	556	1	0	0	0	0	0	0	0	1	5343	446	16	5		5	EXOC5	14	57696455	Silent	SNP	A	TCGA-BH-A0HP-01A-12D-A099-09	4518574	57696455	49653085	162	49312										
AHNAK2	0	genome.wustl.edu	37	chr14	105409680	105409680	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcgggcacggggccctctggGagtttcacgtccacttggcc	14	14	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	105409680	105409680	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.12108	p.L4036	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	172	0	0	33	14	29.79	-	-	-	A	105409680	G	A	105409680	2	1	556	1	0	0	0	0	0	0	0	1	415	1161	41	2		2	AHNAK2	14	105409680	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	47713225	105409680	1939860	163	49313										
AHNAK2	0	genome.wustl.edu	37	chr14	105414690	105414690	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcggaagggggctgaacgctGaggtcagtggtcttgaggtc	19	7	2	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	105414690	105414690	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.7098	p.L2366	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	143	0	0	39	10	20.41	-	-	-	T	105414690	G	T	105414690	2	4	556	1	0	0	0	0	0	0	0	1	415	1277	45	2		2	AHNAK2	14	105414690	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	5010	105414690	1934850	164	49314										
CDCA4	0	genome.wustl.edu	37	chr14	105478091	105478091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ccgtgttggcaatgaggactGagcggcacaggttgggctcc	16	10	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	14	105478091	105478091	G	A	SNP	CDCA4	ENST00000336219	human	ensembl	69_37n	-1	known	missense	c.176	p.S59L	0.990	pfam_SERTA,pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779	26	0	0	7	3	30	-	-	-	A	105478091	G	A	105478091	3	1	556	1	0	0	0	0	1	0	0	0	3117	1294	45	2	553	2	CDCA4	14	105478091	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	63401	105478091	1871449	165	49315										
MGA	0	genome.wustl.edu	37	chr15	42052536	42052536	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gacaggctccaccaattcctCtaaaactgaagcctgattac	6	13	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	15	42052536	42052536	C	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.7207	p.L2403V	0.003	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	94	0	0	50	18	26.47	-	-	-	G	42052536	C	G	42052536	3	3	556	1	0	0	0	0	1	0	0	0	9611	912	32	2	7281	2	MGA	15	42052536	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		42052536	60478856	166	49316										
CATSPER2	0	genome.wustl.edu	37	chr15	43940233	43940233	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tcagctcggggaagctgcatCtgctcttcttgttggtaagc	12	10	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	15	43940233	43940233	C	T	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	silent	c.27	p.Q9	0.010	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	125	0	0	18	9	33.33	-	-	-	T	43940233	C	T	43940233	2	4	556	1	0	0	0	0	0	0	0	1	2713	912	32	2		2	CATSPER2	15	43940233	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1887697	43940233	58591159	167	49317										
ZSCAN2	0	genome.wustl.edu	37	chr15	85147402	85147402	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtgcactcggccgcctccgaGagctctgccggcgctggctg	15	16	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	15	85147402	85147402	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	missense	c.244	p.E82K	0.982	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	49	0	0	7	2	22.22	-	-	-	A	85147402	G	A	85147402	3	1	556	1	0	0	0	0	1	0	0	0	18323	943	33	2	246	2	ZSCAN2	15	85147402	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	41207169	85147402	17383990	168	49318										
SRL	0	genome.wustl.edu	37	chr16	4247856	4247856	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggaggtagtttatcatggtaGatttaccaacactccacggt	10	8	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	4247856	4247856	G	T	SNP	SRL	ENST00000399609	human	ensembl	69_37n	-1	known	missense	c.320	p.S107Y	1.000	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	-	no_errors	SRL	HGNC	ENSG00000185739	77	0	0	127	37	22.56	-	-	-	T	4247856	G	T	4247856	3	4	556	1	0	0	0	0	1	0	0	0	15241	942	33	2	1113	2	SRL	16	4247856	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		4247856	86106897	169	49319										
DNAH3	0	genome.wustl.edu	37	chr16	20975814	20975814	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tagaagcatccagctcttctCcaatgttttcaatcaagaca	5	11	4	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	20975814	20975814	C	G	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.9392	p.G3131A	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	105	0	0	132	44	25	-	-	-	G	20975814	C	G	20975814	3	3	556	1	0	0	0	0	1	0	0	0	4639	855	30	2	2997	2	DNAH3	16	20975814	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	16727958	20975814	69378939	170	49320										
ERN2	0	genome.wustl.edu	37	chr16	23702689	23702689	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cactgcgcagcctcccgcctCcagtgccctcaccaggggct	10	20	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	23702689	23702689	C	T	SNP	ERN2	ENST00000562458	human	ensembl	69_37n	-1	putative	nonsense	c.219	p.W73*	1.000	pfam_KEN_RNase_activator,superfamily_Kinase-like_dom	pfam_KEN_RNase_activator,superfamily_Kinase-like_dom,smart_PUG-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERN2	HGNC	ENSG00000134398	61	0	0	16	5	23.81	-	-	-	T	23702689	C	T	23702689	4	4	556	1	0	0	0	0	0	1	0	0	5275	864	30	2	358	2	ERN2	16	23702689	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2726875	23702689	66652064	171	49321										
HS3ST4	0	genome.wustl.edu	37	chr16	26147248	26147248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctccagtatttccccctctcCcagatcctctttgtcagtgg	6	16	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	26147248	26147248	C	T	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	silent	c.1050	p.S350	0.937	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	91	0	0	45	12	21.05	-	-	-	T	26147248	C	T	26147248	2	4	556	1	0	0	0	0	0	0	0	1	7418	610	22	4		4	HS3ST4	16	26147248	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2444559	26147248	64207505	172	49322										
CDH1	0	genome.wustl.edu	37	chr16	68844099	68844099	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	accctcacttggttctttcaGctcttctctcacgctgtgtc	6	15	6	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	68844099	68844099	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.688-1	e6-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	75	0	0	24	19	44.19	-	-	-	A	68844099	G	A	68844099	5	1	556	1	0	0	0	0	0	0	1	0	3124	985	34	4	709	4	CDH1	16	68844099	Splice_Site	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	42696851	68844099	21510654	173	49323										
WWP2	0	genome.wustl.edu	37	chr16	69973789	69973789	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tacaagagctacgaacagctGagagagaagctgctgtatgc	12	8	0	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	69973789	69973789	G	C	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	silent	c.2559	p.L853	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	41	0	0	15	4	21.05	-	-	-	C	69973789	G	C	69973789	2	2	556	1	0	0	0	0	0	0	0	1	17513	1277	45	2		2	WWP2	16	69973789	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	1129690	69973789	20380964	174	49324										
ZFHX3	0	genome.wustl.edu	37	chr16	72830257	72830257	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ggtagctgagccggcaaggtCtgcagcggcatcgtctgcat	15	11	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	72830257	72830257	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.6324	p.Q2108	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	36	0	0	7	4	36.36	-	-	-	T	72830257	C	T	72830257	2	4	556	1	0	0	0	0	0	0	0	1	17730	912	32	2		2	ZFHX3	16	72830257	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2856468	72830257	17524496	175	49325										
CENPN	0	genome.wustl.edu	37	chr16	81062223	81062223	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctcacttgcatacccaacaaGagaatgaattattttaaaat	4	8	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	16	81062223	81062223	G	C	SNP	CENPN	ENST00000428963	human	ensembl	69_37n	1	putative	missense	c.885	p.K295N	0.615	pfam_CHL4	pfam_CHL4	-	no_errors	CENPN	HGNC	ENSG00000166451	78	0	0	115	35	23.33	-	-	-	C	81062223	G	C	81062223	3	2	556	1	0	0	0	0	1	0	0	0	3267	933	33	2	1113	2	CENPN	16	81062223	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	8231966	81062223	9292530	176	49326										
NCOR1	0	genome.wustl.edu	37	chr17	16068438	16068438	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atggttgccccgaaattggaGaggatggagcttcatgtttg	14	6	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	17	16068438	16068438	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.473	p.S158F	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	208	0	0	221	30	11.95	-	-	-	A	16068438	G	A	16068438	3	1	556	1	0	0	0	0	1	0	0	0	10307	942	33	2	7017	2	NCOR1	17	16068438	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		16068438	65126772	177	49327										
MMP28	0	genome.wustl.edu	37	chr17	34105959	34105959	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcaaacaagtcactgatcctCtcagcccaggccgcataact	7	15	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	17	34105959	34105959	C	G	SNP	MMP28	ENST00000587639	human	ensembl	69_37n	-1	known	missense	c.312	p.E104D	0.987	NULL	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	-	no_errors	MMP28	HGNC	ENSG00000129270	116	0	0	20	3	13.04	-	-	-	G	34105959	C	G	34105959	3	3	556	1	0	0	0	0	1	0	0	0	9737	912	32	2	1287	2	MMP28	17	34105959	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	18037521	34105959	47089251	178	49328										
TUBD1	0	genome.wustl.edu	37	chr17	57968254	57968254	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cttgatatgcctcattctctCtcatagagcagagtccctgg	8	12	3	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	17	57968254	57968254	C	G	SNP	TUBD1	ENST00000325752	human	ensembl	69_37n	-1	known	missense	c.110	p.R37T	0.988	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423	112	0	0	150	28	15.73	-	-	-	G	57968254	C	G	57968254	3	3	556	1	0	0	0	0	1	0	0	0	16859	913	32	2	1283	2	TUBD1	17	57968254	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	23862295	57968254	23226956	179	49329										
SCN4A	0	genome.wustl.edu	37	chr17	62041972	62041972	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aggatcagattgatgaggtaGaaagagcccaggaagatgat	14	4	1	7			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	17	62041972	62041972	G	C	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.1308	p.F436L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	148	0	0	37	10	21.28	-	-	-	C	62041972	G	C	62041972	3	2	556	1	0	0	0	0	1	0	0	0	14008	933	33	2	4266	2	SCN4A	17	62041972	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	4073718	62041972	19153238	180	49330										
ARMC7	0	genome.wustl.edu	37	chr17	73106677	73106677	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	attcgctgtcggaggagaatGagaccctggtggagtttgct	15	7	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	17	73106677	73106677	G	A	SNP	ARMC7	ENST00000245543	human	ensembl	69_37n	1	known	missense	c.211	p.E71K	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC7	HGNC	ENSG00000125449	42	0	0	16	12	42.86	-	-	-	A	73106677	G	A	73106677	3	1	556	1	0	0	0	0	1	0	0	0	960	1291	45	2	217	2	ARMC7	17	73106677	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	11064705	73106677	8088533	181	49331										
NEDD4L	0	genome.wustl.edu	37	chr18	55916155	55916155	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgaacccaaaatggaatgaaGaattttatttcagggtaagt	9	4	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	18	55916155	55916155	G	C	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.229	p.E77Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	135	0	0	180	41	18.55	-	-	-	C	55916155	G	C	55916155	3	2	556	1	0	0	0	0	1	0	0	0	10383	943	33	2	271	2	NEDD4L	18	55916155	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		55916155	22161093	182	49332										
EVI5L	0	genome.wustl.edu	37	chr19	7918195	7918195	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcagccatgaagagcaaggaGatggaggagcagatcgagat	16	6	0	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	7918195	7918195	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	69_37n	1	known	silent	c.1122	p.E374	0.997	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459	67	0	0	13	6	31.58	-	-	-	A	7918195	G	A	7918195	2	1	556	1	0	0	0	0	0	0	0	1	5327	933	33	2		2	EVI5L	19	7918195	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		7918195	51210788	183	49333										
OR7A17	0	genome.wustl.edu	37	chr19	14992033	14992033	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctgagattgtggccaggatGatgagcagattcccgagcac	13	9	1	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	14992033	14992033	G	A	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	silent	c.135	p.I45	0.947	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	72	0	0	38	10	20.83	-	-	-	A	14992033	G	A	14992033	2	1	556	1	0	0	0	0	0	0	0	1	11288	1280	45	2		2	OR7A17	19	14992033	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	7073838	14992033	44136950	184	49334										
RASAL3	0	genome.wustl.edu	37	chr19	15575074	15575074	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cggaaccctccagccgccttCtccccaccgccccctgtgtg	8	22	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	15575074	15575074	C	A	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.96	p.E32D	0.912	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	80	0	0	15	6	28.57	-	-	-	A	15575074	C	A	15575074	3	1	556	1	0	0	0	0	1	0	0	0	13148	912	32	2	3007	2	RASAL3	19	15575074	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	583041	15575074	43553909	185	49335										
GLT25D1	0	genome.wustl.edu	37	chr19	17690311	17690311	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtggtggaccgggggctgcaGaaatcgcttgtgtttgagga	18	6	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	17690311	17690311	G	C	SNP	GLT25D1	ENST00000252599	human	ensembl	69_37n	1	known	missense	c.1287	p.Q429H	1.000	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	GLT25D1	HGNC	ENSG00000130309	101	0	0	47	11	18.97	-	-	-	C	17690311	G	C	17690311	3	2	556	1	0	0	0	0	1	0	0	0	6518	933	33	2	1325	2	GLT25D1	19	17690311	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2115237	17690311	41438672	186	49336										
TSHZ3	0	genome.wustl.edu	37	chr19	31768347	31768347	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctatgggctggtcgttgttGacgtggtagaaatagcggtc	15	6	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	31768347	31768347	G	C	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.2352	p.V784	0.965	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	88	0	0	53	16	23.19	-	-	-	C	31768347	G	C	31768347	2	2	556	1	0	0	0	0	0	0	0	1	16721	1277	45	2		2	TSHZ3	19	31768347	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	14078036	31768347	27360636	187	49337										
LTBP4	0	genome.wustl.edu	37	chr19	41114263	41114263	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtaccctgccagccacctctCggccatctgcaggtgagctg	11	16	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	41114263	41114263	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.1495	p.R499G	0.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	58	0	0	13	6	31.58	-	-	-	G	41114263	C	G	41114263	3	3	556	1	0	0	0	0	1	0	0	0	9142	875	31	3	1830	3	LTBP4	19	41114263	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	9345916	41114263	18014720	188	49338										
ZNF283	0	genome.wustl.edu	37	chr19	44351927	44351927	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gttggggctatcaacttactCgacatcagatatttcatact	7	9	3	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	44351927	44351927	C	T	SNP	ZNF283	ENST00000324461	human	ensembl	69_37n	1	known	nonsense	c.1174	p.R392*	0.025	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637	166	0	0	121	38	23.9	-	-	-	T	44351927	C	T	44351927	4	4	556	1	0	0	0	0	0	1	0	0	17916	876	31	1	1188	1	ZNF283	19	44351927	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3237664	44351927	14777056	189	49339										
EML2	0	genome.wustl.edu	37	chr19	46116900	46116900	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gcgggccacagcgttgatatCagtgccgtccgccccctcag	12	16	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	46116900	46116900	C	G	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	missense	c.2326	p.D776H	0.991	superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	111	0	0	24	21	46.67	-	-	-	G	46116900	C	G	46116900	3	3	556	1	0	0	0	0	1	0	0	0	5134	826	29	2	234	2	EML2	19	46116900	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1764973	46116900	13012083	190	49340										
ZNF83	0	genome.wustl.edu	37	chr19	53116808	53116808	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtttctctccagtgtggattCtccagtgatttactagggat	10	8	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	53116808	53116808	C	T	SNP	ZNF83	ENST00000301096	human	ensembl	69_37n	-1	known	missense	c.1010	p.R337K	0.035	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766	94	0	0	155	33	17.55	-	-	-	T	53116808	C	T	53116808	3	4	556	1	0	0	0	0	1	0	0	0	18276	913	32	2	544	2	ZNF83	19	53116808	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	6999908	53116808	6012175	191	49341										
ZNF28	0	genome.wustl.edu	37	chr19	53303801	53303801	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtaaggcttctctccagtgtGaattatactatgttttgcca	8	8	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	53303801	53303801	G	A	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	missense	c.1297	p.H433Y	0.982	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	126	0	0	136	24	15	-	-	-	A	53303801	G	A	53303801	3	1	556	1	0	0	0	0	1	0	0	0	17909	1290	45	2	863	2	ZNF28	19	53303801	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	186993	53303801	5825182	192	49342										
LILRB5	0	genome.wustl.edu	37	chr19	54756786	54756786	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cggaggaggaggaagaggagGaggaacagcagcaggacgaa	20	5	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	54756786	54756786	G	T	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	silent	c.1395	p.L465	0.015	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	219	1	0.45	39	14	26.42	-	-	-	T	54756786	G	T	54756786	2	4	556	1	0	0	0	0	0	0	0	1	8849	1161	41	2		2	LILRB5	19	54756786	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	1452985	54756786	4372197	193	49343										
PTPRH	0	genome.wustl.edu	37	chr19	55715306	55715306	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gccaccatctccagtgcactGaacgcagtaggtcgagttct	10	13	2	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	19	55715306	55715306	G	A	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	nonsense	c.730	p.Q244*	0.177	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	151	0	0	103	25	19.53	-	-	-	A	55715306	G	A	55715306	4	1	556	1	0	0	0	0	0	1	0	0	12886	1299	45	2	2681	2	PTPRH	19	55715306	Nonsense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	958520	55715306	3413677	194	49344										
TRMT6	0	genome.wustl.edu	37	chr20	5921753	5921753	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aggttgatgacccctcccctCtcccgcagttttgtgtagca	9	14	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	5921753	5921753	C	T	SNP	TRMT6	ENST00000203001	human	ensembl	69_37n	-1	known	silent	c.1248	p.E416	0.997	pirsf_tRNA_m1A_mtfrase	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	-	no_errors	TRMT6	HGNC	ENSG00000089195	142	0	0	124	35	22.01	-	-	-	T	5921753	C	T	5921753	2	4	556	1	0	0	0	0	0	0	0	1	16664	912	32	2		2	TRMT6	20	5921753	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		5921753	57103767	195	49345										
TTLL9	0	genome.wustl.edu	37	chr20	30486275	30486275	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gttcattgccttgtcttgcaGagagcagagagcatcgatcc	11	10	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	30486275	30486275	G	A	SNP	TTLL9	ENST00000375938	human	ensembl	69_37n	1	known	splice_site	c.114-1	e3-1	1.000	-	-	-	no_errors	TTLL9	HGNC	ENSG00000131044	63	0	0	23	5	17.86	-	-	-	A	30486275	G	A	30486275	5	1	556	1	0	0	0	0	0	0	1	0	16831	956	33	2	123	2	TTLL9	20	30486275	Splice_Site	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	24564522	30486275	32539245	196	49346										
EIF2S2	0	genome.wustl.edu	37	chr20	32685285	32685285	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cctgtctgattactgaatgaGataccatcatcttttttgtt	6	8	3	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	32685285	32685285	G	C	SNP	EIF2S2	ENST00000374980	human	ensembl	69_37n	-1	known	missense	c.471	p.I157M	1.000	NULL	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977	139	0	0	128	46	26.44	-	-	-	C	32685285	G	C	32685285	3	2	556	1	0	0	0	0	1	0	0	0	5045	932	33	2	550	2	EIF2S2	20	32685285	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2199010	32685285	30340235	197	49347										
C20orf111	0	genome.wustl.edu	37	chr20	42835595	42835595	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ccatccttggcttcggatttCattgtgcaagtttttacact	7	10	1	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	42835595	42835595	C	G	SNP	C20orf111	ENST00000255174	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	pfam_DUF776	pfam_DUF776	-	no_errors	C20orf111	HGNC	ENSG00000132823	139	0	0	217	69	24.13	-	-	-	G	42835595	C	G	42835595	3	3	556	1	0	0	0	0	1	0	0	0	2100	826	29	2	887	2	C20orf111	20	42835595	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	10150310	42835595	20189925	198	49348										
SLC13A3	0	genome.wustl.edu	37	chr20	45188729	45188729	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gacattgaccgagtacatatCagcccagtccgggaaggtgc	12	11	1	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	45188729	45188729	C	T	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1741	p.D581N	0.000	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	71	0	0	20	5	20	-	-	-	T	45188729	C	T	45188729	3	4	556	1	0	0	0	0	1	0	0	0	14482	826	29	2	71	2	SLC13A3	20	45188729	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2353134	45188729	17836791	199	49349										
ADNP	0	genome.wustl.edu	37	chr20	49508164	49508164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	acttttccataggaactattCttccatttcaactgctctct	3	12	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	49508164	49508164	C	G	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.3087	p.K1029N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	81	0	0	127	15	10.56	-	-	-	G	49508164	C	G	49508164	3	3	556	1	0	0	0	0	1	0	0	0	323	912	32	2	225	2	ADNP	20	49508164	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	4319435	49508164	13517356	200	49350			1	87		3	3	524	C		6.752766e-06
ADNP	0	genome.wustl.edu	37	chr20	49508391	49508391	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtcttggtcaacctcactatCagatgcattgtgcattagtt	8	9	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	49508391	49508391	C	G	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.2860	p.D954H	0.948	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	46	0	0	151	20	11.7	-	-	-	G	49508391	C	G	49508391	3	3	556	1	0	0	0	0	1	0	0	0	323	826	29	2	452	2	ADNP	20	49508391	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	227	49508391	13517129	201	49351			1	87		3	3	524	C		6.752766e-06
ADNP	0	genome.wustl.edu	37	chr20	49508687	49508687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cagtcttactagcattgactCtggaatccttctcatcatga	6	11	4	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	49508687	49508687	C	G	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.2564	p.R855T	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	118	0	0	130	15	10.34	-	-	-	G	49508687	C	G	49508687	3	3	556	1	0	0	0	0	1	0	0	0	323	913	32	2	748	2	ADNP	20	49508687	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	296	49508687	13516833	202	49352			1	87		3	3	524	C		6.752766e-06
TSHZ2	0	genome.wustl.edu	37	chr20	51872856	51872856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tctcacctgggtttccaaatGaaggacatgacccgcttgtc	9	12	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	20	51872856	51872856	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.2859	p.M953I	1.000	pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	91	0	0	59	15	20.27	-	-	-	A	51872856	G	A	51872856	3	1	556	1	0	0	0	0	1	0	0	0	16720	1290	45	2	2865	2	TSHZ2	20	51872856	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	2364169	51872856	11152664	203	49353										
RUNX1	0	genome.wustl.edu	37	chr21	36252856	36252857	+	Frame_Shift_Ins	INS	-	-	T													0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tttgacagataacgtacctcINSttccacttcgaccgacaaac							TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	21	36252856	36252857	-	T	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.506_505	p.R169fs	1.000:0.998	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	87	0	0	101	23	18.55	-	-	-	T	36252857	-	T	36252856	7	5	556	1	0	1	1	0	0	0	0	0	13832	913	32	0	989	0	RUNX1	21	36252856	Frame_Shift_Ins	INS	-	TCGA-BH-A0HP-01A-12D-A099-09		36252856	11877039	204	49354										
DYRK1A	0	genome.wustl.edu	37	chr21	38845021	38845021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	catgcaaaccttcatctgttCggcttgcaccgtcattttca	6	13	4	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	21	38845021	38845021	C	T	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.46	p.R16W	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	93	0	0	46	17	26.98	-	-	-	T	38845021	C	T	38845021	3	4	556	1	0	0	0	0	1	0	0	0	4889	875	31	1	52	1	DYRK1A	21	38845021	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	2592165	38845021	9284874	205	49355										
DYRK1A	0	genome.wustl.edu	37	chr21	38853104	38853104	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgttacgaaattgactccttGataggcaaaggttcctttgg	10	8	0	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	21	38853104	38853104	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.492	p.L164F	0.982	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	150	0	0	169	27	13.78	-	-	-	C	38853104	G	C	38853104	3	2	556	1	0	0	0	0	1	0	0	0	4889	1281	45	2	506	2	DYRK1A	21	38853104	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	8083	38853104	9276791	206	49356										
C22orf28	0	genome.wustl.edu	37	chr22	32788229	32788229	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tatcaaaatttcacttacctCttccataaccagtttgggtg	5	10	3	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	22	32788229	32788229	C	G	SNP	C22orf28	ENST00000216038	human	ensembl	69_37n	-1	known	missense	c.1408	p.E470Q	1.000	pfam_RtcB_family,superfamily_RtcB_family	pfam_RtcB_family,superfamily_RtcB_family	-	no_errors	C22orf28	HGNC	ENSG00000100220	79	0	0	49	14	22.22	-	-	-	G	32788229	C	G	32788229	3	3	556	1	0	0	0	0	1	0	0	0	2160	922	32	2	117	2	C22orf28	22	32788229	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09		32788229	18516337	207	49357										
LARGE	0	genome.wustl.edu	37	chr22	33960864	33960864	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gtggaacacagcccacagctCtgcaatgtcagtggcaaagg	12	11	2	0			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	22	33960864	33960864	C	G	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.757	p.E253Q	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	78	0	0	38	12	24	-	-	-	G	33960864	C	G	33960864	3	3	556	1	0	0	0	0	1	0	0	0	8681	922	32	2	1553	2	LARGE	22	33960864	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1172635	33960864	17343702	208	49358										
CSF2RB	0	genome.wustl.edu	37	chr22	37334464	37334464	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	tgccccaggtgcccgtcattCagctcttcaaagccctgaag	9	15	4	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	22	37334464	37334464	C	A	SNP	CSF2RB	ENST00000262825	human	ensembl	69_37n	1	known	missense	c.2632	p.Q878K	0.998	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368	61	0	0	16	8	33.33	-	-	-	A	37334464	C	A	37334464	3	1	556	1	0	0	0	0	1	0	0	0	3967	827	29	2	2664	2	CSF2RB	22	37334464	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	3373600	37334464	13970102	209	49359										
PHKA2	0	genome.wustl.edu	37	chrX	18936866	18936866	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cgcgtggagtggatagcactGaagacatggcggtcttctgt	15	8	2	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	18936866	18936866	G	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	silent	c.2070	p.F690	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	89	0	0	130	39	23.08	-	-	-	A	18936866	G	A	18936866	2	1	556	1	0	0	0	0	0	0	0	1	11918	1281	45	2		2	PHKA2	23	18936866	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09		18936866	136333694	210	49360										
PQBP1	0	genome.wustl.edu	37	chrX	48759632	48759632	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	accggggccacgacaagtctGacagggatcgagagcgtggc	16	11	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	48759632	48759632	G	A	SNP	PQBP1	ENST00000218224	human	ensembl	69_37n	1	known	missense	c.415	p.D139N	0.994	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	PQBP1	HGNC	ENSG00000102103	132	0	0	17	5	22.73	-	-	-	A	48759632	G	A	48759632	3	1	556	1	0	0	0	0	1	0	0	0	12494	1290	45	2	429	2	PQBP1	23	48759632	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	29822766	48759632	106510928	211	49361										
CCNB3	0	genome.wustl.edu	37	chrX	50052923	50052923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	gacagtacttaccaagacatCgttgtctttacaggaaaaga	8	8	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	50052923	50052923	C	T	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.1754	p.S585L	0.001	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	79	0	0	48	8	14.29	-	-	-	T	50052923	C	T	50052923	3	4	556	1	0	0	0	0	1	0	0	0	2943	893	31	1	1768	1	CCNB3	23	50052923	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1293291	50052923	105217637	212	49362										
WNK3	0	genome.wustl.edu	37	chrX	54319370	54319370	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atggggaaacctggggttgtGaaacaactgtcggtccaagg	15	7	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	54319370	54319370	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.1988	p.S663L	0.954	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	188	0	0	133	47	26.11	-	-	-	A	54319370	G	A	54319370	3	1	556	1	0	0	0	0	1	0	0	0	17476	1294	45	2	3474	2	WNK3	23	54319370	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	4266447	54319370	100951190	213	49363										
GDPD2	0	genome.wustl.edu	37	chrX	69652507	69652507	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ttttgtggaccttcctcctcCaaaggtgagtgctttgtgcc	10	11	0	1			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	69652507	69652507	C	T	SNP	GDPD2	ENST00000453994	human	ensembl	69_37n	1	known	nonsense	c.1687	p.Q563*	0.022	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	205	1	0.49	172	64	27.12	-	-	-	T	69652507	C	T	69652507	4	4	556	1	0	0	0	0	0	1	0	0	6376	595	21	4	1741	4	GDPD2	23	69652507	Nonsense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	15333137	69652507	85618053	214	49364										
TAF1	0	genome.wustl.edu	37	chrX	70607298	70607298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	aagggccaatacgcatattcGagactttctacaggtaagaa	9	8	1	2			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	70607298	70607298	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.2411	p.R804Q	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	182	0	0	159	49	23.56	-	-	-	A	70607298	G	A	70607298	3	1	556	1	0	0	0	0	1	0	0	0	15605	1058	37	1	2532	1	TAF1	23	70607298	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	954791	70607298	84663262	215	49365										
PCDH19	0	genome.wustl.edu	37	chrX	99662072	99662072	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	atgtcgcctgagttgggattGatggagacataggtgaagac	15	5	0	5			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	99662072	99662072	G	C	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.1524	p.I508M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	90	0	0	25	5	16.67	-	-	-	C	99662072	G	C	99662072	3	2	556	1	0	0	0	0	1	0	0	0	11587	1280	45	2	1946	2	PCDH19	23	99662072	Missense_Mutation	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	29054774	99662072	55608488	216	49366										
ARMCX2	0	genome.wustl.edu	37	chrX	100911132	100911132	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	actacttgaactgctgagttCaggttagaggccatgatatc	10	8	1	4			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	100911132	100911132	C	T	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	silent	c.1443	p.L481	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	145	0	0	126	26	17.11	-	-	-	T	100911132	C	T	100911132	2	4	556	1	0	0	0	0	0	0	0	1	964	813	29	2		2	ARMCX2	23	100911132	Silent	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	1249060	100911132	54359428	217	49367										
ARMCX2	0	genome.wustl.edu	37	chrX	100911530	100911530	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	ctcagagtctgaatctgactCtgtgtcagtccacccggact	9	13	5	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	100911530	100911530	C	G	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	missense	c.1045	p.E349Q	1.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	93	0	0	42	15	26.32	-	-	-	G	100911530	C	G	100911530	3	3	556	1	0	0	0	0	1	0	0	0	964	922	32	2	857	2	ARMCX2	23	100911530	Missense_Mutation	SNP	C	TCGA-BH-A0HP-01A-12D-A099-09	398	100911530	54359030	218	49368										
BRCC3	0	genome.wustl.edu	37	chrX	154327650	154327650	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.655963302752294	143	3.00739285071332e-62	4.32862752430815	4.81799450549451	3.99083438685209	0.170264682694672	0.708590892235699	110	cacatctccattgagggccaGaaggaagaggaaaggtagga	14	7	1	3			TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	X	154327650	154327650	G	A	SNP	BRCC3	ENST00000399042	human	ensembl	69_37n	1	known	silent	c.609	p.Q203	0.999	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	BRCC3	HGNC	ENSG00000185515	71	0	0	45	10	18.18	-	-	-	A	154327650	G	A	154327650	2	1	556	1	0	0	0	0	0	0	0	1	1508	933	33	2		2	BRCC3	23	154327650	Silent	SNP	G	TCGA-BH-A0HP-01A-12D-A099-09	53416120	154327650	942910	219	49369										
SNRNP40	0	genome.wustl.edu	37	chr1	31769548	31769548	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	aactcatgccgctgccgcttGactggaaccagcggcaactc	10	15	1	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	1	31769548	31769548	G	A	SNP	SNRNP40	ENST00000446633	human	ensembl	69_37n	-1	known	silent	c.51	p.V17	0.849	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SNRNP40	HGNC	ENSG00000060688	39	0	0	25	13	34.21	-	-	-	A	31769548	G	A	31769548	2	1	557	1	0	0	0	0	0	0	0	1	14945	1277	45	2		2	SNRNP40	1	31769548	Silent	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		31769548	217481073	1	49370										
KIF21B	0	genome.wustl.edu	37	chr1	200958025	200958025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tcagtcggccctccaacagcCggatctgggcttccttttgt	10	14	2	0			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	1	200958025	200958025	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.3167	p.R1056Q	1.000	superfamily_Prefoldin	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	37	0	0	35	7	16.67	-	-	-	T	200958025	C	T	200958025	3	4	557	1	0	0	0	0	1	0	0	0	8341	652	23	1	1759	1	KIF21B	1	200958025	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09	169188477	200958025	48292596	2	49371										
TMEM150A	0	genome.wustl.edu	37	chr2	85826426	85826426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	cagctgagaactctcatggaCaaagaagactccacctaaaa	7	11	1	3			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	2	85826426	85826426	C	T	SNP	TMEM150A	ENST00000334462	human	ensembl	69_37n	-1	known	missense	c.589	p.V197I	0.966	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150A	HGNC	ENSG00000168890	25	0	0	20	4	16.67	-	-	-	T	85826426	C	T	85826426	3	4	557	1	0	0	0	0	1	0	0	0	16162	478	17	4	230	4	TMEM150A	2	85826426	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09		85826426	157372947	3	49372										
HECW2	0	genome.wustl.edu	37	chr2	197081794	197081794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tgcagcccagaaccaccgaaTtacaatatgattgtcatggt	8	10	1	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	2	197081794	197081794	T	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.4432	p.I1478V	1.000	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	286	0	0	104	70	40.23	-	-	-	C	197081794	T	C	197081794	3	2	557	1	0	0	0	0	1	0	0	0	7094	1493	52	5	298	5	HECW2	2	197081794	Missense_Mutation	SNP	T	TCGA-BH-A0HQ-01A-11W-A050-09	111255368	197081794	46117579	4	49373										
OSBPL10	0	genome.wustl.edu	37	chr3	31725367	31725367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ctcttaggcttgaccctgtcCttgggaacttcccaggagca	10	13	1	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	3	31725367	31725367	C	T	SNP	OSBPL10	ENST00000429492	human	ensembl	69_37n	-1	putative	missense	c.791	p.R264K	0.991	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OSBPL10	HGNC	ENSG00000144645	161	0	0	132	16	10.74	-	-	-	T	31725367	C	T	31725367	3	4	557	1	0	0	0	0	1	0	0	0	11348	680	24	4	829	4	OSBPL10	3	31725367	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09		31725367	166297063	5	49374										
IQCG	0	genome.wustl.edu	37	chr3	197670853	197670853	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tctacggtactaggtggttcGcctgtcactgacaccgtcat	10	12	3	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	3	197670853	197670853	G	A	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	silent	c.78	p.G26	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	46	0	0	24	14	35	-	-	-	A	197670853	G	A	197670853	2	1	557	1	0	0	0	0	0	0	0	1	7864	1074	38	1		1	IQCG	3	197670853	Silent	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09	165945486	197670853	351577	6	49375										
KIAA0922	0	genome.wustl.edu	37	chr4	154556719	154556719	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	acatgccagtttcatcagctCtccggtcagtgttgcccatc	8	14	4	0			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	4	154556719	154556719	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.4553	p.S1518F	0.839	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	70	0	0	80	18	18.37	-	-	-	T	154556719	C	T	154556719	3	4	557	1	0	0	0	0	1	0	0	0	8253	913	32	2	4687	2	KIAA0922	4	154556719	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09		154556719	36597557	7	49376										
HIST1H3G	0	genome.wustl.edu	37	chr6	26271388	26271388	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tctgtcttgaagtcctgagcGatttctcgcaccaggcgttg	11	11	3	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	6	26271388	26271388	G	A	SNP	HIST1H3G	ENST00000305910	human	ensembl	69_37n	-1	known	silent	c.225	p.I75	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	65	0	0	59	26	30.59	-	-	-	A	26271388	G	A	26271388	2	1	557	1	0	0	0	0	0	0	0	1	7212	1048	37	1		1	HIST1H3G	6	26271388	Silent	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		26271388	144843679	8	49377										
MYB	0	genome.wustl.edu	37	chr6	135511376	135511377	+	Frame_Shift_Ins	INS	-	-	CA													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	gtggcataaccacttgaatcINScagaagttaagaaaacctcc							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	6	135511376	135511377	-	CA	INS	MYB	ENST00000341911	human	ensembl	69_37n	1	known	frame_shift_ins	c.418_419	p.E141fs	1.000:1.000	superfamily_Homeodomain-like,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	144	0	0	97	37	27.61	-	-	-	CA	135511377	-	CA	135511376	7	5	557	1	0	1	1	0	0	0	0	0	10079	855	30	0	436	0	MYB	6	135511376	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09	109239988	135511376	35603691	9	49378										
EPHA1	0	genome.wustl.edu	37	chr7	143096020	143096021	+	Frame_Shift_Ins	INS	-	-	G													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ggcagagaagctcaggtttcINSggggggccgaggggggacct							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	7	143096020	143096021	-	G	INS	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1010_1009	p.R337fs	0.023:0.149	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	22	0	0	9	2	18.18	-	-	-	G	143096021	-	G	143096020	7	5	557	1	0	1	1	0	0	0	0	0	5202	884	31	0	1972	0	EPHA1	7	143096020	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09		143096020	16042643	10	49379										
MLL3	0	genome.wustl.edu	37	chr7	151859396	151859396	+	Frame_Shift_Del	DEL	C	C	-													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	agaatggggaggactctgtgCtgaggagacaggacaggcta							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	7	151859396	151859396	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11266	p.A3756fs	0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	105	0	0	60	10	13.7	-	-	-	-	151859396	C	-	151859396	7	5	557	1	0	1	0	1	0	0	0	0	9693	797	28	0	3537	0	MLL3	7	151859396	Frame_Shift_Del	DEL	C	TCGA-BH-A0HQ-01A-11W-A050-09	8763376	151859396	7279267	11	49380										
CTSB	0	genome.wustl.edu	37	chr8	11703257	11703257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ccagcccaggatgcggatggCatggccacccatcatctctc	10	16	2	0			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	8	11703257	11703257	C	T	SNP	CTSB	ENST00000353047	human	ensembl	69_37n	-1	known	missense	c.835	p.A279T	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733	44	0	0	22	16	42.11	-	-	-	T	11703257	C	T	11703257	3	4	557	1	0	0	0	0	1	0	0	0	4062	710	25	4	192	4	CTSB	8	11703257	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09		11703257	134660765	12	49381										
TRIM14	0	genome.wustl.edu	37	chr9	100862246	100862246	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	acaggatcgggctcctggctGatactccagaccctgttgga	12	12	0	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	9	100862246	100862246	G	A	SNP	TRIM14	ENST00000475147	human	ensembl	69_37n	-1	known	nonsense	c.220	p.Q74*	0.005	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM14	HGNC	ENSG00000106785	57	0	0	51	18	26.09	-	-	-	A	100862246	G	A	100862246	4	1	557	1	0	0	0	0	0	1	0	0	16585	1280	45	2	840	2	TRIM14	9	100862246	Nonsense_Mutation	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		100862246	40351185	13	49382										
VCL	0	genome.wustl.edu	37	chr10	75843202	75843202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	actctgtgcaggcaaagaacGcagggagattctgggaactt	13	8	2	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	10	75843202	75843202	G	T	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	missense	c.953	p.R318L	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	183	1	0.54	130	64	32.99	-	-	-	T	75843202	G	T	75843202	3	4	557	1	0	0	0	0	1	0	0	0	17236	1087	38	3	983	3	VCL	10	75843202	Missense_Mutation	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		75843202	59691545	14	49383										
TENC1	0	genome.wustl.edu	37	chr12	53454755	53454756	+	Frame_Shift_Ins	INS	-	-	C													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ccctggcaaggccctcgaggINScccccccgacagcccagatg							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	12	53454755	53454756	-	C	INS	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	frame_shift_ins	c.3095_3096	p.D1035fs	0.719:0.438	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	16	0	0	15	3	16.67	-	-	-	C	53454756	-	C	53454755	7	5	557	1	0	1	1	0	0	0	0	0	15853	1203	42	0	3252	0	TENC1	12	53454755	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09		53454755	80397140	15	49384										
TBX3	0	genome.wustl.edu	37	chr12	115118782	115118782	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	agtagcggggctgtccgggtGaatgtacatcctctttggca	14	9	1	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	12	115118782	115118782	G	A	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.559	p.H187Y	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	91	0	0	80	16	16.67	-	-	-	A	115118782	G	A	115118782	3	1	557	1	0	0	0	0	1	0	0	0	15754	1290	45	2	1700	2	TBX3	12	115118782	Missense_Mutation	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09	61664027	115118782	18733113	16	49385										
SFTA3	0	genome.wustl.edu	37	chr14	36946266	36946266	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ggacttggcacgcaaacagcGacacaggtgggtatccgctt	13	11	0	0			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	14	36946266	36946266	G	A	SNP	SFTA3	ENST00000518002	human	ensembl	69_37n	-1	known	silent	c.171	p.V57	0.002	NULL	NULL	-	no_errors	SFTA3	HGNC	ENSG00000229415	187	0	0	84	45	34.88	-	-	-	A	36946266	G	A	36946266	2	1	557	1	0	0	0	0	0	0	0	1	14276	1045	37	1		1	SFTA3	14	36946266	Silent	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		36946266	70403274	17	49386										
RDH11	0	genome.wustl.edu	37	chr14	68157923	68157923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	cgagtacggacacatcatcaCtcctgcattgttgatcaaaa	7	11	3	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	14	68157923	68157923	C	T	SNP	RDH11	ENST00000381346	human	ensembl	69_37n	-1	known	missense	c.388	p.V130M	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH11	HGNC	ENSG00000072042	81	0	0	144	32	18.18	-	-	-	T	68157923	C	T	68157923	3	4	557	1	0	0	0	0	1	0	0	0	13273	565	20	4	584	4	RDH11	14	68157923	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09	31211657	68157923	39191617	18	49387										
CDAN1	0	genome.wustl.edu	37	chr15	43023885	43023886	+	Frame_Shift_Ins	INS	-	-	C													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	aaggtggggggtgggcagggINSccccccactgctctgaggag							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	15	43023885	43023886	-	C	INS	CDAN1	ENST00000356231	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1672_1671	p.P557fs	1.000:0.026	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	36	0	0	18	2	10	-	-	-	C	43023886	-	C	43023885	7	5	557	1	0	1	1	0	0	0	0	0	3083	1203	42	0	2083	0	CDAN1	15	43023885	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09		43023885	59507507	19	49388										
ADPGK	0	genome.wustl.edu	37	chr15	73048722	73048722	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ccagcatattcatggccccgTtggagaggtcgtgagagaag	14	9	1	3			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	15	73048722	73048722	T	C	SNP	ADPGK	ENST00000311669	human	ensembl	69_37n	-1	known	missense	c.710	p.N237S	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	347	0	0	170	95	35.85	-	-	-	C	73048722	T	C	73048722	3	2	557	1	0	0	0	0	1	0	0	0	330	1725	60	5	792	5	ADPGK	15	73048722	Missense_Mutation	SNP	T	TCGA-BH-A0HQ-01A-11W-A050-09	30024837	73048722	29482670	20	49389										
SHCBP1	0	genome.wustl.edu	37	chr16	46617506	46617506	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	gacaacaccataaccttcatTattatgtattatattattca	2	8	2	0			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	46617506	46617506	T	G	SNP	SHCBP1	ENST00000303383	human	ensembl	69_37n	-1	known	missense	c.1615	p.N539H	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241	192	1	0.52	46	28	37.84	-	-	-	G	46617506	T	G	46617506	3	3	557	1	0	0	0	0	1	0	0	0	14363	1754	61	5	411	5	SHCBP1	16	46617506	Missense_Mutation	SNP	T	TCGA-BH-A0HQ-01A-11W-A050-09		46617506	43737247	21	49390										
CDH3	0	genome.wustl.edu	37	chr16	68714903	68714903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tacacactgaccatccaggcCacagacatggatggggacgg	12	12	0	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	68714903	68714903	C	T	SNP	CDH3	ENST00000264012	human	ensembl	69_37n	1	known	silent	c.900	p.A300	0.291	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	55	0	0	65	14	17.72	-	-	-	T	68714903	C	T	68714903	2	4	557	1	0	0	0	0	0	0	0	1	3140	581	21	4		4	CDH3	16	68714903	Silent	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09	22097397	68714903	21639850	22	49391										
ZFHX3	0	genome.wustl.edu	37	chr16	72830109	72830109	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	aaaatattgccgcaagactcGgagctgatcatctgtgatcc	9	10	2	3			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	72830109	72830109	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.6472	p.R2158*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	81	0	0	19	37	66.07	-	-	-	A	72830109	G	A	72830109	4	1	557	1	0	0	0	0	0	1	0	0	17730	1124	39	1	4647	1	ZFHX3	16	72830109	Nonsense_Mutation	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09	4115206	72830109	17524644	23	49392										
FN3KRP	0	genome.wustl.edu	37	chr17	80674690	80674691	+	Frame_Shift_Ins	INS	-	-	G													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	gtcagggccacgggccactcINSggggggcgggtgcatcagcc							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	17	80674690	80674691	-	G	INS	FN3KRP	ENST00000269373	human	ensembl	69_37n	1	known	frame_shift_ins	c.59_60	p.G23fs	0.730:0.064	pfam_Fructo-/Ketosamine-3-kinase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	10	0	0	8	2	20	-	-	-	G	80674691	-	G	80674690	7	5	557	1	0	1	1	0	0	0	0	0	6010	893	31	0	61	0	FN3KRP	17	80674690	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09		80674690	520520	24	49393										
FAM187B	0	genome.wustl.edu	37	chr19	35716083	35716084	+	Frame_Shift_Ins	INS	-	-	G													0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	gagctggctctcccacgtcaINSggggggtgtcgttggcacgc							TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	19	35716083	35716084	-	G	INS	FAM187B	ENST00000324675	human	ensembl	69_37n	-1	known	frame_shift_ins	c.755_754	p.L252fs	0.372:0.160	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558	9	0	0	7	2	22.22	-	-	-	G	35716084	-	G	35716083	7	5	557	1	0	1	1	0	0	0	0	0	5554	188	7	0	358	0	FAM187B	19	35716083	Frame_Shift_Ins	INS	-	TCGA-BH-A0HQ-01A-11W-A050-09		35716083	23412900	25	49394										
PIWIL3	0	genome.wustl.edu	37	chr22	25158460	25158460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	ggcgcgagtccttgccctacCaggcattgtggtcctgaagg	14	12	0	1			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	22	25158460	25158460	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.7	p.G3S	0.736	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	110	0	0	83	15	15.31	-	-	-	T	25158460	C	T	25158460	3	4	557	1	0	0	0	0	1	0	0	0	12033	594	21	4	2721	4	PIWIL3	22	25158460	Missense_Mutation	SNP	C	TCGA-BH-A0HQ-01A-11W-A050-09		25158460	26146106	26	49395										
MXRA5	0	genome.wustl.edu	37	chrX	3238811	3238811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.148148148148148	4	0.409947765818112	1.92410714285714	NA	1.92410714285714	0.0285714285714286	0.251737451737452	0	tttgttggtccagtgacgagGtgactgggaagttacaaagt	14	5	0	2			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	X	3238811	3238811	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.4915	p.P1639S	0.006	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	144	0	0	135	68	33.5	-	-	-	A	3238811	G	A	3238811	3	1	557	1	0	0	0	0	1	0	0	0	10075	1261	44	4	3583	4	MXRA5	23	3238811	Missense_Mutation	SNP	G	TCGA-BH-A0HQ-01A-11W-A050-09		3238811	152031749	27	49396										
INSL5	0	genome.wustl.edu	37	chr1	67266829	67266829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	ttctagcccacagagtctcaCagactccttgctccgcactt	6	16	2	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	67266829	67266829	C	A	SNP	INSL5	ENST00000304526	human	ensembl	69_37n	-1	known	missense	c.76	p.V26L	0.028	superfamily_Insulin-like,smart_Insulin-like	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	-	no_errors	INSL5	HGNC	ENSG00000172410	182	0	0	263	80	23.32	-	-	-	A	67266829	C	A	67266829	3	1	558	1	0	0	0	0	1	0	0	0	7823	478	17	4	339	4	INSL5	1	67266829	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09		67266829	181983792	1	49397										
FMN2	0	genome.wustl.edu	37	chr1	240371704	240371704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	ctggagtgggaatacctcctCcgccccctctacctggtgct	10	16	1	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	240371704	240371704	C	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.3592	p.P1198T	1.000	pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	26	0	0	12	21	63.64	-	-	-	A	240371704	C	A	240371704	3	1	558	1	0	0	0	0	1	0	0	0	5996	855	30	2	3610	2	FMN2	1	240371704	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	173104875	240371704	8878917	2	49398										
OR2T2	0	genome.wustl.edu	37	chr1	248616883	248616883	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	agccttctacaccaacgtgcTgccccactcctaccacactc	4	20	1	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	248616883	248616883	T	A	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	missense	c.785	p.L262Q	0.339	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	34	0	0	173	24	12.12	-	-	-	A	248616883	T	A	248616883	3	1	558	1	0	0	0	0	1	0	0	0	11093	1580	55	5	787	5	OR2T2	1	248616883	Missense_Mutation	SNP	T	TCGA-BH-A0HU-01A-11W-A050-09	8245179	248616883	633738	3	49399										
EIF5B	0	genome.wustl.edu	37	chr2	99993052	99993052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	aatatgactctgatgatgatCggactaaagaagaaagggct	11	5	1	6			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	99993052	99993052	C	T	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	missense	c.1795	p.R599W	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	600	0	0	329	106	24.37	-	-	-	T	99993052	C	T	99993052	3	4	558	1	0	0	0	0	1	0	0	0	5081	875	31	1	1833	1	EIF5B	2	99993052	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09		99993052	143206321	4	49400										
RIF1	0	genome.wustl.edu	37	chr2	152320145	152320145	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	atgctgtattattggaaactAatactgtagaggagaaaaat	9	3	0	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	152320145	152320145	A	T	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.4111	p.N1371Y	0.024	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	70	0	0	35	31	46.97	-	-	-	T	152320145	A	T	152320145	3	4	558	1	0	0	0	0	1	0	0	0	13443	362	13	5	4225	5	RIF1	2	152320145	Missense_Mutation	SNP	A	TCGA-BH-A0HU-01A-11W-A050-09	52327093	152320145	90879228	5	49401										
ABCB11	0	genome.wustl.edu	37	chr2	169842673	169842673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	atccaggacaagtgtggagcCgtaccagaaggccagtgcat	13	10	0	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	169842673	169842673	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.1030	p.G344S	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	327	0	0	193	70	26.62	-	-	-	T	169842673	C	T	169842673	3	4	558	1	0	0	0	0	1	0	0	0	42	652	23	1	3011	1	ABCB11	2	169842673	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	17522528	169842673	73356700	6	49402										
CHRNA1	0	genome.wustl.edu	37	chr2	175624061	175624061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	attatctggctaagttacctGtttcagacgcacattggttg	9	8	2	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	175624061	175624061	G	T	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	missense	c.232	p.Q78K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	143	0	0	51	42	45.16	-	-	-	T	175624061	G	T	175624061	3	4	558	1	0	0	0	0	1	0	0	0	3410	1386	48	4	1248	4	CHRNA1	2	175624061	Missense_Mutation	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09	5781388	175624061	67575312	7	49403										
DCHS2	0	genome.wustl.edu	37	chr4	155180776	155180776	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gttcaaagcatggtgaattaTcattctcatcctgtatcaag	7	8	4	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	4	155180776	155180776	T	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.5345	p.D1782V	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	299	0	0	110	93	45.59	-	-	-	A	155180776	T	A	155180776	3	1	558	1	0	0	0	0	1	0	0	0	4319	1435	50	5	3429	5	DCHS2	4	155180776	Missense_Mutation	SNP	T	TCGA-BH-A0HU-01A-11W-A050-09		155180776	35973500	8	49404										
POC5	0	genome.wustl.edu	37	chr5	74998503	74998503	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	catcagaaacaagaaaatcgCtcacaagtatttcatgggca	7	9	3	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	5	74998503	74998503	C	A	SNP	POC5	ENST00000428202	human	ensembl	69_37n	-1	known	missense	c.440	p.S147I	0.000	NULL	NULL	-	no_errors	POC5	HGNC	ENSG00000152359	292	0	0	168	127	43.05	-	-	-	A	74998503	C	A	74998503	3	1	558	1	0	0	0	0	1	0	0	0	12251	797	28	4	1319	4	POC5	5	74998503	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09		74998503	105916757	9	49405										
COL19A1	0	genome.wustl.edu	37	chr6	70639432	70639432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	actccgtcctttgtttgatcGtcagtggcacaaacttggca	9	11	1	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	6	70639432	70639432	G	A	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.506	p.R169H	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	384	0	0	226	148	39.57	-	-	-	A	70639432	G	A	70639432	3	1	558	1	0	0	0	0	1	0	0	0	3706	1145	40	1	524	1	COL19A1	6	70639432	Missense_Mutation	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09		70639432	100475635	10	49406										
MDN1	0	genome.wustl.edu	37	chr6	90402292	90402292	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gacaggctttctggcccttgCcttccagctcctttcctcct	7	17	1	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	6	90402292	90402292	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.10457	p.G3486A	0.234	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	52	0	0	60	43	41.75	-	-	-	G	90402292	C	G	90402292	3	3	558	1	0	0	0	0	1	0	0	0	9486	739	26	4	6493	4	MDN1	6	90402292	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	19762860	90402292	80712775	11	49407										
RP1L1	0	genome.wustl.edu	37	chr8	10466220	10466220	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gtttctcccctttcacttatGccctctccctcctgctcagc	4	19	4	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	8	10466220	10466220	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	silent	c.5388	p.G1796	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	151	0	0	37	26	41.27	-	-	-	T	10466220	G	T	10466220	2	4	558	1	0	0	0	0	0	0	0	1	13619	1306	46	4		4	RP1L1	8	10466220	Silent	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09		10466220	135897802	12	49408										
NR4A3	0	genome.wustl.edu	37	chr9	102626006	102626006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gacaggctctggagcccaccGagtccaaggtcctgggtgcc	14	14	1	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	102626006	102626006	G	A	SNP	NR4A3	ENST00000330847	human	ensembl	69_37n	1	known	missense	c.1771	p.E591K	0.977	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_NOR1_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	194	0	0	142	72	33.64	-	-	-	A	102626006	G	A	102626006	3	1	558	1	0	0	0	0	1	0	0	0	10707	1059	37	1	1875	1	NR4A3	9	102626006	Missense_Mutation	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09		102626006	38587425	13	49409										
ORM2	0	genome.wustl.edu	37	chr9	117092701	117092701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	agcccccatcaccagctcccCccttctccccagatcactgg	5	22	3	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	117092701	117092701	C	A	SNP	ORM2	ENST00000412657	human	ensembl	69_37n	1	known	missense	c.517	p.P173T	0.000	NULL	NULL	-	no_errors	ORM2	HGNC	ENSG00000228278	71	0	0	58	12	17.14	-	-	-	A	117092701	C	A	117092701	3	1	558	1	0	0	0	0	1	0	0	0	11341	638	22	4		4	ORM2	9	117092701	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	14466695	117092701	24120730	14	49410										
HSPA5	0	genome.wustl.edu	37	chr9	128001807	128001807	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	ggtacagtaacaactgcatgGgtaacctaaaaggataaaag	10	6	0	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	128001807	128001807	G	A	SNP	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	silent	c.498	p.T166	0.959	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	77	0	0	53	27	33.75	-	-	-	A	128001807	G	A	128001807	2	1	558	1	0	0	0	0	0	0	0	1	7467	1219	43	4		4	HSPA5	9	128001807	Silent	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09	10909106	128001807	13211624	15	49411										
PLAU	0	genome.wustl.edu	37	chr10	75673437	75673438	+	Frame_Shift_Ins	INS	-	-	G													0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	ggccatctacaggaggcaccINSgggggggctctgtcacctac							TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	10	75673437	75673438	-	G	INS	PLAU	ENST00000372764	human	ensembl	69_37n	1	known	frame_shift_ins	c.601_602	p.S204fs	0.156:0.201	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861	24	0	0	23	3	11.54	-	-	-	G	75673438	-	G	75673437	7	5	558	1	0	1	1	0	0	0	0	0	12096	643	23	0	661	0	PLAU	10	75673437	Frame_Shift_Ins	INS	-	TCGA-BH-A0HU-01A-11W-A050-09		75673437	59861310	16	49412										
MUC2	0	genome.wustl.edu	37	chr11	1090919	1090919	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	tgaccaccttcaccaccatcAccctccccaccacccccacc	1	26	2	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	11	1090919	1090919	A	C	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.3814	p.T1272P	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	27	0	0	28	10	26.32	-	-	-	C	1090919	A	C	1090919	3	2	558	1	0	0	0	0	1	0	0	0	10047	159	6	5	3924	5	MUC2	11	1090919	Missense_Mutation	SNP	A	TCGA-BH-A0HU-01A-11W-A050-09		1090919	133915597	17	49413										
PIWIL1	0	genome.wustl.edu	37	chr12	130827144	130827144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gaaatagaaaacaatgactgGgagagcccgagccagagcca	12	9	0	4			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	12	130827144	130827144	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.8	p.G3E	1.000	pfam_GAGE	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	97	0	0	69	25	26.6	-	-	-	A	130827144	G	A	130827144	3	1	558	1	0	0	0	0	1	0	0	0	12031	1232	43	4	10	4	PIWIL1	12	130827144	Missense_Mutation	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09		130827144	3024751	18	49414										
SERPINA1	0	genome.wustl.edu	37	chr14	94845800	94845800	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	aggtcgtcagggtgatctcaCcttggagagcttcaggggtg	16	8	3	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	14	94845800	94845800	C	T	SNP	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	splice_site	c.1065+1	e3+1	1.000	-	-	-	no_errors	SERPINA1	HGNC	ENSG00000197249	79	0	0	77	55	41.67	-	-	-	T	94845800	C	T	94845800	5	4	558	1	0	0	0	0	0	0	1	0	14174	521	18	4	198	4	SERPINA1	14	94845800	Splice_Site	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09		94845800	12503740	19	49415										
AKAP13	0	genome.wustl.edu	37	chr15	86123003	86123003	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	actgaaaaaacagcagaaacGgaaacttcacgaagtcgtga	9	8	1	3			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	15	86123003	86123003	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	silent	c.1704	p.T568	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	39	0	0	40	5	10.87	-	-	-	A	86123003	G	A	86123003	2	1	558	1	0	0	0	0	0	0	0	1	449	1103	39	1		1	AKAP13	15	86123003	Silent	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09		86123003	16408389	20	49416										
SPATA22	0	genome.wustl.edu	37	chr17	3346557	3346557	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	gccaggtgtaacagctgaatCaagaacagctaagcaatatt	9	8	1	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	17	3346557	3346557	C	A	SNP	SPATA22	ENST00000397168	human	ensembl	69_37n	-1	known	missense	c.811	p.D271Y	0.994	NULL	NULL	-	no_errors	SPATA22	HGNC	ENSG00000141255	99	0	0	48	17	26.15	-	-	-	A	3346557	C	A	3346557	3	1	558	1	0	0	0	0	1	0	0	0	15099	826	29	2	288	2	SPATA22	17	3346557	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09		3346557	77848653	21	49417										
ZNF443	0	genome.wustl.edu	37	chr19	12541421	12541421	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	ctcctgtgtgagtccttttaTgtcgagaaaggtatctgaaa	10	7	1	3			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	12541421	12541421	T	C	SNP	ZNF443	ENST00000301547	human	ensembl	69_37n	-1	known	missense	c.1565	p.H522R	0.452	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	189	0	0	174	96	35.56	-	-	-	C	12541421	T	C	12541421	3	2	558	1	0	0	0	0	1	0	0	0	18012	1464	51	5	454	5	ZNF443	19	12541421	Missense_Mutation	SNP	T	TCGA-BH-A0HU-01A-11W-A050-09		12541421	46587562	22	49418										
ZNF420	0	genome.wustl.edu	37	chr19	37619086	37619086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	tgaatgtaaggaatgtggaaAgatgtttagtcatggctcac	12	4	2	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	37619086	37619086	A	G	SNP	ZNF420	ENST00000337995	human	ensembl	69_37n	1	known	missense	c.1193	p.K398R	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050	139	0	0	128	76	37.25	-	-	-	G	37619086	A	G	37619086	3	3	558	1	0	0	0	0	1	0	0	0	17993	72	3	5	1203	5	ZNF420	19	37619086	Missense_Mutation	SNP	A	TCGA-BH-A0HU-01A-11W-A050-09	25077665	37619086	21509897	23	49419										
SCAF1	0	genome.wustl.edu	37	chr19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C													0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	tctggggggctgcggttcgaINSccccccccacccccaccggg							TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	50158041	50158042	-	C	INS	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	frame_shift_ins	c.3532_3533	p.T1181fs	0.839:0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	34	0	0	38	6	13.64	-	-	-	C	50158042	-	C	50158041	7	5	558	1	0	1	1	0	0	0	0	0	13955	275	10	0	3562	0	SCAF1	19	50158041	Frame_Shift_Ins	INS	-	TCGA-BH-A0HU-01A-11W-A050-09	12538955	50158041	8970942	24	49420										
LILRA6	0	genome.wustl.edu	37	chr19	54745497	54745497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	actggggtgggaccacacccGgggggtgtttgtataatagt	16	7	0	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	54745497	54745497	G	A	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.613	p.R205W	0.022	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	15	0	0	10	6	37.5	-	-	-	A	54745497	G	A	54745497	3	1	558	1	0	0	0	0	1	0	0	0	8844	1115	39	1	852	1	LILRA6	19	54745497	Missense_Mutation	SNP	G	TCGA-BH-A0HU-01A-11W-A050-09	4587456	54745497	4383486	25	49421										
ZNF606	0	genome.wustl.edu	37	chr19	58489891	58489891	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	tgtacaataagggatgaactCtcattaaatgctttcccaca	6	9	1	1			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	58489891	58489891	C	G	SNP	ZNF606	ENST00000341164	human	ensembl	69_37n	-1	known	missense	c.2157	p.E719D	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704	330	0	0	300	82	21.47	-	-	-	G	58489891	C	G	58489891	3	3	558	1	0	0	0	0	1	0	0	0	18128	912	32	2	225	2	ZNF606	19	58489891	Missense_Mutation	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	3744394	58489891	639092	26	49422										
ZNF324	0	genome.wustl.edu	37	chr19	58983206	58983206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	caccagctcctgcacacgggCgagcggcccttccgctgcgt	12	18	0	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	58983206	58983206	C	T	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	silent	c.1347	p.G449	0.023	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	9	0	0	9	6	40	-	-	-	T	58983206	C	T	58983206	2	4	558	1	0	0	0	0	0	0	0	1	17940	755	27	1		1	ZNF324	19	58983206	Silent	SNP	C	TCGA-BH-A0HU-01A-11W-A050-09	493315	58983206	145777	27	49423										
GPKOW	0	genome.wustl.edu	37	chrX	48972279	48972279	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	attggcctcctttgtacatgTtgtccacaaaccgcacacgc	7	14	0	0			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	X	48972279	48972279	T	C	SNP	GPKOW	ENST00000156109	human	ensembl	69_37n	-1	known	missense	c.1106	p.N369S	0.863	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	109	0	0	57	76	57.14	-	-	-	C	48972279	T	C	48972279	3	2	558	1	0	0	0	0	1	0	0	0	6663	1725	60	5	340	5	GPKOW	23	48972279	Missense_Mutation	SNP	T	TCGA-BH-A0HU-01A-11W-A050-09		48972279	106298281	28	49424										
CXorf40A	0	genome.wustl.edu	37	chrX	148627391	148627391	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.994628167771038	0.617777777777778	3.70666666666667	0	1	1	0	tgctcagattcagaccttgcTcaggaaaggggaaaagtttg	12	7	3	2			TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	X	148627391	148627391	T	G	SNP	CXorf40A	ENST00000359293	human	ensembl	69_37n	1	known	missense	c.215	p.L72R	0.008	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	37	0	0	12	18	60	-	-	-	G	148627391	T	G	148627391	3	3	558	1	0	0	0	0	1	0	0	0	4139	1551	54	5	217	5	CXorf40A	23	148627391	Missense_Mutation	SNP	T	TCGA-BH-A0HU-01A-11W-A050-09	99655112	148627391	6643169	29	49425										
ARID1A	0	genome.wustl.edu	37	chr1	27087880	27087880	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ctttgtctggagcaggcaacCagatgccacctcggccaccc	10	16	1	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	27087880	27087880	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.2167	p.Q723*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	105	0	0	22	19	46.34	-	-	-	T	27087880	C	T	27087880	4	4	559	1	0	0	0	0	0	1	0	0	915	595	21	4	2189	4	ARID1A	1	27087880	Nonsense_Mutation	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09		27087880	222162741	1	49426										
FAM63A	0	genome.wustl.edu	37	chr1	150973769	150973769	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cctctgacttctcctggggcTtgatggacaggaggcagttt	13	10	2	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	150973769	150973769	T	A	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.677	p.K226M	1.000	pfam_DUF544	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	128	0	0	38	21	35.59	-	-	-	A	150973769	T	A	150973769	3	1	559	1	0	0	0	0	1	0	0	0	5641	1609	56	5	904	5	FAM63A	1	150973769	Missense_Mutation	SNP	T	TCGA-BH-A0HW-01A-11W-A050-09	123885889	150973769	98276852	2	49427										
CRTC2	0	genome.wustl.edu	37	chr1	153925831	153925831	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tcacacttgtatgaagggcaGagtcagagcttgtcctatgg	12	8	2	3			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	153925831	153925831	G	C	SNP	CRTC2	ENST00000368633	human	ensembl	69_37n	-1	known	missense	c.518	p.S173C	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741	304	1	0.33	52	52	50	-	-	-	C	153925831	G	C	153925831	3	2	559	1	0	0	0	0	1	0	0	0	3930	942	33	2	1599	2	CRTC2	1	153925831	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	2952062	153925831	95324790	3	49428										
OR10K2	0	genome.wustl.edu	37	chr1	158390579	158390579	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	agcaggaagataacaaagagCagctgctgcagcctggccag	13	10	0	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	158390579	158390579	C	T	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	silent	c.78	p.L26	0.212	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	267	0	0	62	95	60.51	-	-	-	T	158390579	C	T	158390579	2	4	559	1	0	0	0	0	0	0	0	1	10987	697	25	4		4	OR10K2	1	158390579	Silent	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09	4464748	158390579	90860042	4	49429										
KHK	0	genome.wustl.edu	37	chr2	27320451	27320451	+	Frame_Shift_Del	DEL	C	C	-													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cagcctccagagcagaagatCcgggtgtccgtggaggtgga							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	27320451	27320451	C	-	DEL	KHK	ENST00000260598	human	ensembl	69_37n	1	known	frame_shift_del	c.498	p.R167fs	1.000	pfam_PfkB	pfam_PfkB	-	no_errors	KHK	HGNC	ENSG00000138030	64	0	0	16	2	11.11	-	-	-	-	27320451	C	-	27320451	7	5	559	1	0	1	0	1	0	0	0	0	8201	845	30	0	655	0	KHK	2	27320451	Frame_Shift_Del	DEL	C	TCGA-BH-A0HW-01A-11W-A050-09		27320451	215878922	5	49430										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452622	43452623	+	Frame_Shift_Ins	INS	-	-	C													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tgagcagggctgtgccgccgINSccccccgacggctccttaag							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	43452622	43452623	-	C	INS	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.321_320	p.G108fs	0.998:1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	49	0	0	1	9	90	-	-	-	C	43452623	-	C	43452622	7	5	559	1	0	1	1	0	0	0	0	0	17743	1074	38	0	1167	0	ZFP36L2	2	43452622	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09	16132171	43452622	199746751	6	49431										
WNT6	0	genome.wustl.edu	37	chr2	219735910	219735910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	agagtgccagttccagttccGcttccgccgctggaattgct	11	13	0	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	219735910	219735910	G	A	SNP	WNT6	ENST00000233948	human	ensembl	69_37n	1	known	missense	c.242	p.R81H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596	39	0	0	10	7	38.89	-	-	-	A	219735910	G	A	219735910	3	1	559	1	0	0	0	0	1	0	0	0	17490	1087	38	1	248	1	WNT6	2	219735910	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	176283288	219735910	23463463	7	49432										
CNTN4	0	genome.wustl.edu	37	chr3	2787338	2787338	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cagtgcacagcgacaaactcGtttggaacaattgttagcag	10	9	0	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	2787338	2787338	G	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	silent	c.315	p.S105	0.004	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	461	0	0	82	60	42.25	-	-	-	C	2787338	G	C	2787338	2	2	559	1	0	0	0	0	0	0	0	1	3673	1132	40	3		3	CNTN4	3	2787338	Silent	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09		2787338	195235092	8	49433										
EOMES	0	genome.wustl.edu	37	chr3	27761733	27761733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	agcgccagtggttggggtccGccagcaccacctctacgaac	12	15	1	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	27761733	27761733	G	A	SNP	EOMES	ENST00000449599	human	ensembl	69_37n	-1	known	missense	c.965	p.A322V	0.999	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	209	0	0	53	47	46.53	-	-	-	A	27761733	G	A	27761733	3	1	559	1	0	0	0	0	1	0	0	0	5184	1087	38	1	1115	1	EOMES	3	27761733	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	24974395	27761733	170260697	9	49434										
MECOM	0	genome.wustl.edu	37	chr3	168813030	168813030	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	aatgatctgtcacagtatttGcatctgaaaaataaacaaag	6	6	3	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	168813030	168813030	G	A	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.2826	p.C942	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	142	0	0	106	18	14.52	-	-	-	A	168813030	G	A	168813030	2	1	559	1	0	0	0	0	0	0	0	1	9493	1311	46	4		4	MECOM	3	168813030	Silent	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	141051297	168813030	29209400	10	49435										
SLC9A3	0	genome.wustl.edu	37	chr5	475689	475689	+	Frame_Shift_Del	DEL	G	G	-													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tccccacctgcaggggagtcGgacgctgtgtccttggtgac							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	475689	475689	G	-	DEL	SLC9A3	ENST00000264938	human	ensembl	69_37n	-1	known	frame_shift_del	c.2238	p.D747fs	0.015	NULL	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_bac,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230	58	0	0	17	2	10.53	-	-	-	-	475689	G	-	475689	7	5	559	1	0	1	0	1	0	0	0	0	14802	1103	39	0	278	0	SLC9A3	5	475689	Frame_Shift_Del	DEL	G	TCGA-BH-A0HW-01A-11W-A050-09		475689	180439571	11	49436										
PCDHA6	0	genome.wustl.edu	37	chr5	140209681	140209681	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cggccacggttctggtgtcgCtggtggagagtggccaggct	18	10	1	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	140209681	140209681	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	silent	c.2005	p.L669	0.795	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	51	0	0	8	12	60	-	-	-	T	140209681	C	T	140209681	2	4	559	1	0	0	0	0	0	0	0	1	11601	796	28	4		4	PCDHA6	5	140209681	Silent	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09	139733992	140209681	40705579	12	49437										
ARHGAP26	0	genome.wustl.edu	37	chr5	142513639	142513639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tgcagcgagaggcccctgacGctcttccacaccgttcagtc	10	16	2	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	142513639	142513639	G	A	SNP	ARHGAP26	ENST00000443674	human	ensembl	69_37n	1	novel	missense	c.662	p.R221H	0.358	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP26	HGNC	ENSG00000145819	163	1	0.61	63	16	20	-	-	-	A	142513639	G	A	142513639	3	1	559	1	0	0	0	0	1	0	0	0	877	1074	38	1	1880	1	ARHGAP26	5	142513639	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	2303958	142513639	38401621	13	49438										
CNOT8	0	genome.wustl.edu	37	chr5	154254920	154254920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tggcttaggcacaggagtggCccagaagcagaatgaggatg	16	7	0	3			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	154254920	154254920	C	T	SNP	CNOT8	ENST00000285896	human	ensembl	69_37n	1	known	missense	c.800	p.A267V	1.000	superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508	397	0	0	112	107	48.2	-	-	-	T	154254920	C	T	154254920	3	4	559	1	0	0	0	0	1	0	0	0	3655	739	26	4	822	4	CNOT8	5	154254920	Missense_Mutation	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09	11741281	154254920	26660340	14	49439										
WBSCR28	0	genome.wustl.edu	37	chr7	73279580	73279580	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ggcagcaccaagggcctgggCctggccttgctcagtgcctg	15	14	1	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	7	73279580	73279580	C	T	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	silent	c.330	p.G110	0.007	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	79	0	0	25	7	21.88	-	-	-	T	73279580	C	T	73279580	2	4	559	1	0	0	0	0	0	0	0	1	17364	726	26	4		4	WBSCR28	7	73279580	Silent	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09		73279580	85859083	15	49440										
TACC1	0	genome.wustl.edu	37	chr8	38696043	38696043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	gaagaaatacgaagagacccGgcaagaagttttggagatga	13	5	0	5			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	38696043	38696043	G	A	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	1	known	missense	c.1931	p.R644Q	0.999	pfam_TACC	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	278	1	0.36	485	95	16.38	-	-	-	A	38696043	G	A	38696043	3	1	559	1	0	0	0	0	1	0	0	0	15593	1116	39	1	1925	1	TACC1	8	38696043	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09		38696043	107667979	16	49441										
GDF6	0	genome.wustl.edu	37	chr8	97172770	97172770	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	gtcgcgcggcgcccgctgcaTcttgccttccttgcggcttc	12	17	1	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	97172770	97172770	T	A	SNP	GDF6	ENST00000287020	human	ensembl	69_37n	-1	known	missense	c.151	p.M51L	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466	56	0	0	20	4	16.67	-	-	-	A	97172770	T	A	97172770	3	1	559	1	0	0	0	0	1	0	0	0	6369	1435	50	5	1224	5	GDF6	8	97172770	Missense_Mutation	SNP	T	TCGA-BH-A0HW-01A-11W-A050-09	58476727	97172770	49191252	17	49442										
FLJ43860	0	genome.wustl.edu	37	chr8	142458155	142458155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cacggcctgcttgaactcccGggcaaactgcagctcgtgca	11	15	0	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	142458155	142458155	G	A	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.2671	p.R891W	0.003	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	47	0	0	8	21	72.41	-	-	-	A	142458155	G	A	142458155	3	1	559	1	0	0	0	0	1	0	0	0	5976	1115	39	1	1325	1	FLJ43860	8	142458155	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	45285385	142458155	3905867	18	49443										
PTPRD	0	genome.wustl.edu	37	chr9	8486284	8486284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tccaaatgtgtccaccggagGgtgccactgaataagagcag	12	10	0	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	9	8486284	8486284	G	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.2533	p.P845T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	87	0	0	21	25	54.35	-	-	-	T	8486284	G	T	8486284	3	4	559	1	0	0	0	0	1	0	0	0	12882	1232	43	4	3349	4	PTPRD	9	8486284	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09		8486284	132727147	19	49444										
GABBR2	0	genome.wustl.edu	37	chr9	101052989	101052989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ccgatggatgggaggtaggcGtggtggaggatggggagctg	23	4	0	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	9	101052989	101052989	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	silent	c.2703	p.H901	1.000	NULL	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	181	0	0	68	11	13.75	-	-	-	A	101052989	G	A	101052989	2	1	559	1	0	0	0	0	0	0	0	1	6205	1136	40	1		1	GABBR2	9	101052989	Silent	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	92566705	101052989	40160442	20	49445										
CCDC3	0	genome.wustl.edu	37	chr10	12940472	12940472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ggcattgatgtgcggcagcgCgcccgccgccagcttctcac	13	16	1	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	12940472	12940472	C	T	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	missense	c.757	p.A253T	0.003	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	30	0	0	2	5	71.43	-	-	-	T	12940472	C	T	12940472	3	4	559	1	0	0	0	0	1	0	0	0	2830	768	27	1	59	1	CCDC3	10	12940472	Missense_Mutation	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09		12940472	122594275	21	49446										
GRID1	0	genome.wustl.edu	37	chr10	87406859	87406860	+	RNA	INS	-	-	A													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	gccttgcaggtaacagggctINSgctcagaggcagatgcccct							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	87406859	87406860	-	A	INS	GRID1	ENST00000474115	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GRID1	HGNC	ENSG00000182771	45	0	0	6	4	40	-	-	-	A	87406860	-	A	87406859	6	5	559	0	1	1	1	0	0	0	0	0	6822	1595	55	0		0	GRID1	10	87406859	RNA	INS	-	TCGA-BH-A0HW-01A-11W-A050-09	74466387	87406859	48127888	22	49447										
CEP55	0	genome.wustl.edu	37	chr10	95287850	95287851	+	Frame_Shift_Ins	INS	-	-	C													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	aatgtcccaagtgcaatataINScagtatccagccactgagca							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	95287850	95287851	-	C	INS	CEP55	ENST00000371485	human	ensembl	69_37n	1	known	frame_shift_ins	c.1335_1336	p.Q445fs	0.000:0.969	NULL	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180	257	0	0	117	45	27.78	-	-	-	C	95287851	-	C	95287850	7	5	559	1	0	1	1	0	0	0	0	0	3284	381	14	0	1365	0	CEP55	10	95287850	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09	7880991	95287850	40246897	23	49448										
CAPRIN1	0	genome.wustl.edu	37	chr11	34093289	34093289	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	atagggtaagcttgatgattAccaggaacgaatgaacaaag	11	5	0	3			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	34093289	34093289	A	G	SNP	CAPRIN1	ENST00000341394	human	ensembl	69_37n	1	known	missense	c.233	p.Y78C	1.000	NULL	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	225	0	0	142	138	49.11	-	-	-	G	34093289	A	G	34093289	3	3	559	1	0	0	0	0	1	0	0	0	2660	391	14	5	239	5	CAPRIN1	11	34093289	Missense_Mutation	SNP	A	TCGA-BH-A0HW-01A-11W-A050-09		34093289	100913227	24	49449										
FOLH1	0	genome.wustl.edu	37	chr11	49192781	49192781	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tagaaccaagaagaccaaatTcttctgcatcccagcttgca	6	12	2	3			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	49192781	49192781	T	A	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.1274	p.E425V	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	193	0	0	95	51	34.93	-	-	-	A	49192781	T	A	49192781	3	1	559	1	0	0	0	0	1	0	0	0	6025	1783	62	5	1014	5	FOLH1	11	49192781	Missense_Mutation	SNP	T	TCGA-BH-A0HW-01A-11W-A050-09	15099492	49192781	85813735	25	49450										
TTC9C	0	genome.wustl.edu	37	chr11	62505789	62505789	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tccggcggtacctccagctgAcacagtcagaactcagcagc	10	15	2	2			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	62505789	62505789	A	T	SNP	TTC9C	ENST00000316461	human	ensembl	69_37n	1	known	missense	c.451	p.T151S	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9C	HGNC	ENSG00000162222	135	0	0	85	53	38.41	-	-	-	T	62505789	A	T	62505789	3	4	559	1	0	0	0	0	1	0	0	0	16814	275	10	5	461	5	TTC9C	11	62505789	Missense_Mutation	SNP	A	TCGA-BH-A0HW-01A-11W-A050-09	13313008	62505789	72500727	26	49451										
FGF23	0	genome.wustl.edu	37	chr12	4479710	4479710	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	acgttcagggggtcccgctcCgagtcgtcctcggcgctccg	14	16	1	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	4479710	4479710	C	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.555	p.S185	0.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	88	0	0	17	12	41.38	-	-	-	T	4479710	C	T	4479710	2	4	559	1	0	0	0	0	0	0	0	1	5898	639	23	1		1	FGF23	12	4479710	Silent	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09		4479710	129372185	27	49452										
DNAJC22	0	genome.wustl.edu	37	chr12	49742746	49742746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	acctgggaagggacagccacGccctgctctggatgctgacc	13	14	1	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	49742746	49742746	G	A	SNP	DNAJC22	ENST00000395069	human	ensembl	69_37n	1	known	missense	c.91	p.A31T	1.000	pfam_TM2	pfam_DnaJ_N,pfam_TM2,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC22	HGNC	ENSG00000178401	92	0	0	28	5	15.15	-	-	-	A	49742746	G	A	49742746	3	1	559	1	0	0	0	0	1	0	0	0	4676	1087	38	1	93	1	DNAJC22	12	49742746	Missense_Mutation	SNP	G	TCGA-BH-A0HW-01A-11W-A050-09	45263036	49742746	84109149	28	49453										
KRT81	0	genome.wustl.edu	37	chr12	52681780	52681780	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ccactcaccttgctgcggtaCcaggactcggcctcggcccg	11	18	1	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	52681780	52681780	C	T	SNP	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	nonsense	c.888	p.W296*	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	175	0	0	72	21	22.58	-	-	-	T	52681780	C	T	52681780	4	4	559	1	0	0	0	0	0	1	0	0	8548	508	18	4	649	4	KRT81	12	52681780	Nonsense_Mutation	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09	2939034	52681780	81170115	29	49454										
FAM179B	0	genome.wustl.edu	37	chr14	45431981	45431982	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tccaggctttgcaagctgctINSttgccgcggcggggcggtcg							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	14	45431981	45431982	-	G	INS	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	frame_shift_ins	c.357_358	p.L119fs	0.994:0.995	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	55	0	0	13	2	13.33	-	-	-	G	45431982	-	G	45431981	7	5	559	1	0	1	1	0	0	0	0	0	5546	1596	56	0	359	0	FAM179B	14	45431981	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09		45431981	61917559	30	49455										
RAD51	0	genome.wustl.edu	37	chr15	41021711	41021711	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tgtttcctgtaggtatgcacTgcttattgtagacagtgcca	10	8	0	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	15	41021711	41021711	T	G	SNP	RAD51	ENST00000382643	human	ensembl	69_37n	1	known	missense	c.656	p.L219R	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180	65	0	0	19	23	54.76	-	-	-	G	41021711	T	G	41021711	3	3	559	1	0	0	0	0	1	0	0	0	13068	1580	55	5	804	5	RAD51	15	41021711	Missense_Mutation	SNP	T	TCGA-BH-A0HW-01A-11W-A050-09		41021711	61509681	31	49456										
SLC16A13	0	genome.wustl.edu	37	chr17	6940081	6940081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	ccctgagcacgaagttcgggCccaggcccgtggtgatgact	14	13	0	3			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	17	6940081	6940081	C	T	SNP	SLC16A13	ENST00000308027	human	ensembl	69_37n	1	known	missense	c.235	p.P79S	0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	82	0	0	32	6	15.79	-	-	-	T	6940081	C	T	6940081	3	4	559	1	0	0	0	0	1	0	0	0	14495	739	26	4	241	4	SLC16A13	17	6940081	Missense_Mutation	SNP	C	TCGA-BH-A0HW-01A-11W-A050-09		6940081	74255129	32	49457										
AKAP8	0	genome.wustl.edu	37	chr19	15484018	15484019	+	Frame_Shift_Ins	INS	-	-	C													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tctcggcattcactgtactgINSccccccaaagctgccattgc							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	15484018	15484019	-	C	INS	AKAP8	ENST00000269701	human	ensembl	69_37n	-1	known	frame_shift_ins	c.505_504	p.Q168fs	0.986:0.890	NULL	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127	44	0	0	18	4	18.18	-	-	-	C	15484019	-	C	15484018	7	5	559	1	0	1	1	0	0	0	0	0	457	1328	46	0	1613	0	AKAP8	19	15484018	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09		15484018	43644965	33	49458										
LRP3	0	genome.wustl.edu	37	chr19	33695733	33695733	+	Frame_Shift_Del	DEL	G	G	-													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	tccagctccggccaggcccaGggcttccgtctgtcttacat							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	33695733	33695733	G	-	DEL	LRP3	ENST00000253193	human	ensembl	69_37n	1	known	frame_shift_del	c.450	p.G151fs	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881	62	0	0	15	2	11.11	-	-	-	-	33695733	G	-	33695733	7	5	559	1	0	1	0	1	0	0	0	0	9024	991	35	0	464	0	LRP3	19	33695733	Frame_Shift_Del	DEL	G	TCGA-BH-A0HW-01A-11W-A050-09	18211715	33695733	25433250	34	49459										
SLC17A7	0	genome.wustl.edu	37	chr19	49933805	49933806	+	Frame_Shift_Ins	INS	-	-	G													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cggacagggggtgggggcctINSggggggctgaaatgtgctgt							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	49933805	49933806	-	G	INS	SLC17A7	ENST00000221485	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1654_1653	p.R551fs	0.558:0.428	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888	50	0	0	20	3	13.04	-	-	-	G	49933806	-	G	49933805	7	5	559	1	0	1	1	0	0	0	0	0	14511	1579	55	0	32	0	SLC17A7	19	49933805	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09	16238072	49933805	9195178	35	49460										
ZNF135	0	genome.wustl.edu	37	chr19	58578672	58578673	+	Frame_Shift_Ins	INS	-	-	A													0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	gaaaccctataaatgcactcINSagtgtgggaggaccttcaac							TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	58578672	58578673	-	A	INS	ZNF135	ENST00000401053	human	ensembl	69_37n	1	known	frame_shift_ins	c.892_893	p.C299fs	0.001:0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293	112	0	0	55	49	47.12	-	-	-	A	58578673	-	A	58578672	7	5	559	1	0	1	1	0	0	0	0	0	17821	827	29	0	1023	0	ZNF135	19	58578672	Frame_Shift_Ins	INS	-	TCGA-BH-A0HW-01A-11W-A050-09	8644867	58578672	550311	36	49461										
CHKB	0	genome.wustl.edu	37	chr22	51018484	51018484	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	gtataatcataaacccactcAcaaaaatggttcccaatgtc	4	11	2	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	22	51018484	51018484	A	G	SNP	CHKB	ENST00000471515	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CHKB	HGNC	ENSG00000100288	49	0	0	13	13	50	-	-	-	G	51018484	A	G	51018484	5	3	559	1	0	0	0	0	0	0	1	0	3377	157	6	5	357	5	CHKB	22	51018484	Splice_Site	SNP	A	TCGA-BH-A0HW-01A-11W-A050-09		51018484	286082	37	49462										
PORCN	0	genome.wustl.edu	37	chrX	48378800	48378800	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cactgtccacaagtggtcagAgctcagctgggccagtcact	11	13	3	1			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	X	48378800	48378800	A	T	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	1	known	missense	c.1322	p.E441V	1.000	NULL	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	195	0	0	72	60	45.45	-	-	-	T	48378800	A	T	48378800	3	4	559	1	0	0	0	0	1	0	0	0	12332	304	11	5	1376	5	PORCN	23	48378800	Missense_Mutation	SNP	A	TCGA-BH-A0HW-01A-11W-A050-09		48378800	106891760	38	49463										
RPS4X	0	genome.wustl.edu	37	chrX	71493102	71493102	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0256410256410256	1	1	0.531814611154753	5.05223880597015	0	1	1	0	cttgccaataacaaaaatgtTggaaagtcgagtggcaaagc	10	7	0	0			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	X	71493102	71493102	T	G	SNP	RPS4X	ENST00000316084	human	ensembl	69_37n	-1	known	missense	c.670	p.N224H	1.000	pirsf_Ribosomal_S4e	pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034	239	0	0	106	98	48.04	-	-	-	G	71493102	T	G	71493102	3	3	559	1	0	0	0	0	1	0	0	0	13731	1812	63	5	129	5	RPS4X	23	71493102	Missense_Mutation	SNP	T	TCGA-BH-A0HW-01A-11W-A050-09	23114302	71493102	83777458	39	49464										
MACF1	0	genome.wustl.edu	37	chr1	39888058	39888058	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ttatctagatgtttcagaaaGaacaagtggatcctcttcag	8	7	4	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	39888058	39888058	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.9643	p.E3215Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	148	0	0	117	19	13.87	-	-	-	C	39888058	G	C	39888058	3	2	560	1	0	0	0	0	1	0	0	0	9211	943	33	2	16008	2	MACF1	1	39888058	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		39888058	209362563	1	49465										
ASB17	0	genome.wustl.edu	37	chr1	76387978	76387978	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	aagatattagactgtcttgtCtgagctacataaaagagagg	10	5	2	4			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	76387978	76387978	C	T	SNP	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	silent	c.468	p.Q156	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	87	0	0	28	34	54.84	-	-	-	T	76387978	C	T	76387978	2	4	560	1	0	0	0	0	0	0	0	1	1025	912	32	2		2	ASB17	1	76387978	Silent	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	36499920	76387978	172862643	2	49466										
NUP210L	0	genome.wustl.edu	37	chr1	153991518	153991518	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ctgtctgtagaatattgttgGcagaaatcatccatatccca	7	9	2	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	153991518	153991518	G	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.4544	p.A1515G	0.049	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	127	0	0	106	17	13.82	-	-	-	C	153991518	G	C	153991518	3	2	560	1	0	0	0	0	1	0	0	0	10834	1203	42	4	1154	4	NUP210L	1	153991518	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	77603540	153991518	95259103	3	49467										
HMCN1	0	genome.wustl.edu	37	chr1	185964013	185964013	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tggtcaaagagtggatattcCatgtaatgctcaagggactc	11	7	2	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	185964013	185964013	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.3572	p.P1191L	0.970	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	117	0	0	99	13	11.61	-	-	-	T	185964013	C	T	185964013	3	4	560	1	0	0	0	0	1	0	0	0	7271	594	21	4	3666	4	HMCN1	1	185964013	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	31972495	185964013	63286608	4	49468										
HMCN1	0	genome.wustl.edu	37	chr1	185985185	185985185	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	agtgcaaagctgctggaaacCcttctcccattctcacctgg	8	14	2	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	185985185	185985185	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.5005	p.P1669T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	123	0	0	125	15	10.71	-	-	-	A	185985185	C	A	185985185	3	1	560	1	0	0	0	0	1	0	0	0	7271	623	22	4	5131	4	HMCN1	1	185985185	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	21172	185985185	63265436	5	49469										
USH2A	0	genome.wustl.edu	37	chr1	216390881	216390881	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ctcctgagagatgacaattaCaaggctgacatctgaaaaca	8	9	1	5			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	216390881	216390881	C	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3005	p.C1002S	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	101	1	0.98	95	14	12.84	-	-	-	G	216390881	C	G	216390881	3	3	560	1	0	0	0	0	1	0	0	0	17133	478	17	4	12849	4	USH2A	1	216390881	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	30405696	216390881	32859740	6	49470										
ESRRG	0	genome.wustl.edu	37	chr1	216737742	216737742	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tctgcaggatcagaccagagCactacaagatcactagtagt	9	10	3	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	1	216737742	216737742	C	T	SNP	ESRRG	ENST00000391890	human	ensembl	69_37n	-1	known	silent	c.633	p.L211	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	97	0	0	81	40	33.06	-	-	-	T	216737742	C	T	216737742	2	4	560	1	0	0	0	0	0	0	0	1	5299	725	25	4		4	ESRRG	1	216737742	Silent	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	346861	216737742	32512879	7	49471										
MYT1L	0	genome.wustl.edu	37	chr2	1812867	1812867	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ccgttgctggcccgctgtttGatggtcagcatctgctctcc	11	14	3	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	2	1812867	1812867	G	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	silent	c.3153	p.I1051	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	65	0	0	72	16	17.98	-	-	-	A	1812867	G	A	1812867	2	1	560	1	0	0	0	0	0	0	0	1	10179	1280	45	2		2	MYT1L	2	1812867	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		1812867	241386506	8	49472										
LRPPRC	0	genome.wustl.edu	37	chr2	44176743	44176743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcgaaattgaaacgctacccGtcggtcctcgaggctcctgg	11	13	0	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	2	44176743	44176743	G	A	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.1733	p.T578M	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	68	0	0	56	8	12.5	-	-	-	A	44176743	G	A	44176743	3	1	560	1	0	0	0	0	1	0	0	0	9031	1145	40	1	2543	1	LRPPRC	2	44176743	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	42363876	44176743	199022630	9	49473										
PLA2R1	0	genome.wustl.edu	37	chr2	160885378	160885378	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tacctgggctccaattcagaTagttgagcggcgttccatca	10	11	2	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	2	160885378	160885378	T	C	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.938	p.Y313C	0.016	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	65	0	0	51	8	13.56	-	-	-	C	160885378	T	C	160885378	3	2	560	1	0	0	0	0	1	0	0	0	12084	1406	49	5	3565	5	PLA2R1	2	160885378	Missense_Mutation	SNP	T	TCGA-BH-A0HX-01A-21W-A071-09	116708635	160885378	82313995	10	49474										
GADL1	0	genome.wustl.edu	37	chr3	30769808	30769808	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ccggctcacttgagggctgaTcaccacctggcggaagaagt	13	12	2	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	3	30769808	30769808	T	A	SNP	GADL1	ENST00000282538	human	ensembl	69_37n	-1	known	missense	c.1492	p.I498F	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GADL1	HGNC	ENSG00000144644	142	0	0	74	41	35.34	-	-	-	A	30769808	T	A	30769808	3	1	560	1	0	0	0	0	1	0	0	0	6234	1435	50	5	77	5	GADL1	3	30769808	Missense_Mutation	SNP	T	TCGA-BH-A0HX-01A-21W-A071-09		30769808	167252622	11	49475										
ROBO2	0	genome.wustl.edu	37	chr3	77571962	77571962	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gattacacactaagaattaaAaagaccatgagtacagatga	7	6	0	5			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	3	77571962	77571962	A	G	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	silent	c.843	p.K281	0.935	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	342	0	0	148	55	26.96	-	-	-	G	77571962	A	G	77571962	2	3	560	1	0	0	0	0	0	0	0	1	13600	11	1	5		5	ROBO2	3	77571962	Silent	SNP	A	TCGA-BH-A0HX-01A-21W-A071-09	46802154	77571962	120450468	12	49476										
TNIK	0	genome.wustl.edu	37	chr3	170819279	170819279	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	acagccactgtcccatcatgGgtctcgctctctccatcttc	6	17	4	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	3	170819279	170819279	G	T	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	silent	c.2550	p.T850	0.940	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	434	0	0	369	85	18.64	-	-	-	T	170819279	G	T	170819279	2	4	560	1	0	0	0	0	0	0	0	1	16408	1219	43	4		4	TNIK	3	170819279	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	93247317	170819279	27203151	13	49477										
ALPK1	0	genome.wustl.edu	37	chr4	113333139	113333139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	agccagccacgccaattgccCcgcaggtggttattcgccaa	10	15	0	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	4	113333139	113333139	C	T	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	1	known	missense	c.433	p.P145S	1.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	103	0	0	110	40	26.67	-	-	-	T	113333139	C	T	113333139	3	4	560	1	0	0	0	0	1	0	0	0	544	623	22	4	443	4	ALPK1	4	113333139	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09		113333139	77821137	14	49478										
PCDH10	0	genome.wustl.edu	37	chr4	134072575	134072575	+	Frame_Shift_Del	DEL	A	A	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	cctggaccgagaggcgggggActcctacaccctgactgtag							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	4	134072575	134072575	A	-	DEL	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	frame_shift_del	c.1280	p.D427fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	111	0	0	114	16	11.11	-	-	-	-	134072575	A	-	134072575	7	5	560	1	0	1	0	1	0	0	0	0	11580	275	10	0	1282	0	PCDH10	4	134072575	Frame_Shift_Del	DEL	A	TCGA-BH-A0HX-01A-21W-A071-09	20739436	134072575	57081701	15	49479										
FBXO8	0	genome.wustl.edu	37	chr4	175184103	175184103	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tatatgtcaatgcctccttgGacttgtttacgatgattggt	9	7	1	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	4	175184103	175184103	G	T	SNP	FBXO8	ENST00000393674	human	ensembl	69_37n	-1	known	silent	c.141	p.V47	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_F-box_dom_cyclin-like,smart_Sec7,pfscan_F-box_dom_cyclin-like,pfscan_Sec7	-	no_errors	FBXO8	HGNC	ENSG00000164117	214	0	0	138	64	31.68	-	-	-	T	175184103	G	T	175184103	2	4	560	1	0	0	0	0	0	0	0	1	5807	1161	41	2		2	FBXO8	4	175184103	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	41111528	175184103	15970173	16	49480										
SEMA5A	0	genome.wustl.edu	37	chr5	9154711	9154711	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tctgcaggctcctgatgggcTccctccgcctctcagggaag	12	15	2	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	5	9154711	9154711	T	A	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.1370	p.E457V	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	78	0	0	111	21	15.79	-	-	-	A	9154711	T	A	9154711	3	1	560	1	0	0	0	0	1	0	0	0	14125	1551	54	5	1902	5	SEMA5A	5	9154711	Missense_Mutation	SNP	T	TCGA-BH-A0HX-01A-21W-A071-09		9154711	171760549	17	49481										
EGFLAM	0	genome.wustl.edu	37	chr5	38407032	38407032	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ccatttctaggctcatccccCctacctcagcatctctccct	3	20	4	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	5	38407032	38407032	C	G	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	missense	c.931	p.P311A	0.002	NULL	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	127	0	0	136	28	17.07	-	-	-	G	38407032	C	G	38407032	3	3	560	1	0	0	0	0	1	0	0	0	5001	623	22	4	975	4	EGFLAM	5	38407032	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	29252321	38407032	142508228	18	49482										
PCDHB6	0	genome.wustl.edu	37	chr5	140530844	140530844	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gctctttagtcgtcagggtcCtggacgtgaatgacaatgcc	12	10	2	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	5	140530844	140530844	C	G	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.1006	p.L336V	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	215	0	0	150	43	22.16	-	-	-	G	140530844	C	G	140530844	3	3	560	1	0	0	0	0	1	0	0	0	11619	680	24	4	1008	4	PCDHB6	5	140530844	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	102123812	140530844	40384416	19	49483										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769020	140769020	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gccttcgaccacgagcagctGcgcgccttcgaactcacact	9	17	1	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	5	140769020	140769020	G	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.1569	p.L523	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	44	0	0	55	11	16.67	-	-	-	T	140769020	G	T	140769020	2	4	560	1	0	0	0	0	0	0	0	1	11638	1306	46	4		4	PCDHGB4	5	140769020	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	238176	140769020	40146240	20	49484										
FAT2	0	genome.wustl.edu	37	chr5	150947878	150947878	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gtgacgttaagcttcccagcCacagtgaccacaccgctggt	10	14	0	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	5	150947878	150947878	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.615	p.V205	0.622	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	79	0	0	72	25	25.77	-	-	-	T	150947878	C	T	150947878	2	4	560	1	0	0	0	0	0	0	0	1	5736	581	21	4		4	FAT2	5	150947878	Silent	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	10178858	150947878	29967382	21	49485										
RXRB	0	genome.wustl.edu	37	chr6	33166204	33166204	+	Frame_Shift_Del	DEL	C	C	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gcttcacatcttcaggggggCcagacccacccccagggagt							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	6	33166204	33166204	C	-	DEL	RXRB	ENST00000374680	human	ensembl	69_37n	-1	known	frame_shift_del	c.521	p.G174fs	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231	92	0	0	67	22	24.18	-	-	-	-	33166204	C	-	33166204	7	5	560	1	0	1	0	1	0	0	0	0	13850	739	26	0	1112	0	RXRB	6	33166204	Frame_Shift_Del	DEL	C	TCGA-BH-A0HX-01A-21W-A071-09		33166204	137948863	22	49486										
TCP11	0	genome.wustl.edu	37	chr6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ggagccgctcttgtcttcctINSgggggggtcctgaggtttcg							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	18	0	0	10	3	23.08	-	-	-	G	35108560	-	G	35108559	7	5	560	1	0	1	1	0	0	0	0	0	15808	1580	55	0	1512	0	TCP11	6	35108559	Frame_Shift_Ins	INS	-	TCGA-BH-A0HX-01A-21W-A071-09	1942355	35108559	136006508	23	49487										
UNC5D	0	genome.wustl.edu	37	chr8	35563480	35563480	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcatgaaataaaaccccaaaGtaagttatttttcctcttgt	4	8	2	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	8	35563480	35563480	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	splice_site	c.1117+1	e8+1	1.000	-	-	-	no_errors	UNC5D	HGNC	ENSG00000156687	62	0	0	51	44	46.32	-	-	-	T	35563480	G	T	35563480	5	4	560	1	0	0	0	0	0	0	1	0	17092	1043	36	4	1148	4	UNC5D	8	35563480	Splice_Site	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		35563480	110800542	24	49488										
ST18	0	genome.wustl.edu	37	chr8	53030972	53030972	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ttcctttatttcttcatccaAatgcctaatttcttcatcac	1	12	5	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	8	53030972	53030972	A	T	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2785	p.L929M	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	114	0	0	101	12	10.53	-	-	-	T	53030972	A	T	53030972	3	4	560	1	0	0	0	0	1	0	0	0	15303	11	1	5	370	5	ST18	8	53030972	Missense_Mutation	SNP	A	TCGA-BH-A0HX-01A-21W-A071-09	17467492	53030972	93333050	25	49489										
IDI1	0	genome.wustl.edu	37	chr10	1087317	1087317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	aatagcttttaatctcattgGgatctggattcaaagttaca	7	6	3	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	10	1087317	1087317	G	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.665	p.P222H	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	147	0	0	88	19	17.76	-	-	-	T	1087317	G	T	1087317	3	4	560	1	0	0	0	0	1	0	0	0	7553	1232	43	4	193	4	IDI1	10	1087317	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		1087317	134447430	26	49490										
PRKCQ	0	genome.wustl.edu	37	chr10	6472861	6472861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	agggtgctggcggatgtctcCcctcacgcccagcctcttct	11	16	4	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	10	6472861	6472861	C	T	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.1876	p.G626R	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	87	0	0	49	15	23.44	-	-	-	T	6472861	C	T	6472861	3	4	560	1	0	0	0	0	1	0	0	0	12596	632	22	4	252	4	PRKCQ	10	6472861	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	5385544	6472861	129061886	27	49491										
FAM171A1	0	genome.wustl.edu	37	chr10	15256542	15256543	+	Frame_Shift_Ins	INS	-	-	TG													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tggtctcttttggaactctcINScagtcctgcagggagctgca							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	10	15256542	15256543	-	TG	INS	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1045_1044	p.E348fs	0.999:0.486	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	59	0	0	54	59	52.21	-	-	-	TG	15256543	-	TG	15256542	7	5	560	1	0	1	1	0	0	0	0	0	5530	864	30	0	1631	0	FAM171A1	10	15256542	Frame_Shift_Ins	INS	-	TCGA-BH-A0HX-01A-21W-A071-09	8783681	15256542	120278205	28	49492										
HKDC1	0	genome.wustl.edu	37	chr10	70992551	70992552	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcctttccctggatctcggaINSgggtccaagttccgagtgct							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	10	70992551	70992552	-	G	INS	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	frame_shift_ins	c.258_259	p.S87fs	0.996:1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	80	0	0	40	7	14.89	-	-	-	G	70992552	-	G	70992551	7	5	560	1	0	1	1	0	0	0	0	0	7244	291	11	0	268	0	HKDC1	10	70992551	Frame_Shift_Ins	INS	-	TCGA-BH-A0HX-01A-21W-A071-09	55736009	70992551	64542196	29	49493										
SSRP1	0	genome.wustl.edu	37	chr11	57102000	57102000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gtaagcagtttaagtccatgGcccagagcaacacggcgcca	11	12	0	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	11	57102000	57102000	G	A	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	silent	c.177	p.G59	0.993	NULL	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136	129	0	0	112	23	17.04	-	-	-	A	57102000	G	A	57102000	2	1	560	1	0	0	0	0	0	0	0	1	15285	1190	42	4		4	SSRP1	11	57102000	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		57102000	77904516	30	49494										
SART1	0	genome.wustl.edu	37	chr11	65746162	65746162	+	Splice_Site	DEL	T	T	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gaagctggacgaggaggcggTgggtgcccttggggatgtgg							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	11	65746162	65746162	T	-	DEL	SART1	ENST00000312397	human	ensembl	69_37n	1	known	splice_site_del	c.2262+2	e18+2	1.000	-	-	-	no_errors	SART1	HGNC	ENSG00000175467	13	0	0	13	8	33.33	-	-	-	-	65746162	T	-	65746162	8	5	560	1	0	1	0	1	0	0	1	0	13933	1710	59	0	2334	0	SART1	11	65746162	Splice_Site	DEL	T	TCGA-BH-A0HX-01A-21W-A071-09	8644162	65746162	69260354	31	49495										
CPT1A	0	genome.wustl.edu	37	chr11	68530198	68530199	+	Frame_Shift_Del	DEL	GC	GC	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ggaagagccgggtcatggagGcctcgtatgtgaggcaaaac							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	11	68530198	68530199	GC	-	DEL	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	frame_shift_del	c.1772_1771	p.A591fs	1.000:1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	49	0	0	71	48	40	-	-	-	-	68530199	GC	-	68530198	7	5	560	1	0	1	0	1	0	0	0	0	3861	1203	42	0	609	0	CPT1A	11	68530198	Frame_Shift_Del	DEL	GC	TCGA-BH-A0HX-01A-21W-A071-09	2784036	68530198	66476318	32	49496										
MCRS1	0	genome.wustl.edu	37	chr12	49956786	49956786	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	cagctcctggggcgttacctGtctggtcctccagcaggtaa	12	13	1	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	12	49956786	49956786	G	C	SNP	MCRS1	ENST00000357123	human	ensembl	69_37n	-1	known	missense	c.842	p.T281R	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778	14	0	0	18	8	30.77	-	-	-	C	49956786	G	C	49956786	3	2	560	1	0	0	0	0	1	0	0	0	9470	1377	48	4	617	4	MCRS1	12	49956786	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		49956786	83895109	33	49497										
AAAS	0	genome.wustl.edu	37	chr12	53702291	53702291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcgttgctgactttgcacctCcaacgcacccctttccctca	5	18	1	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	12	53702291	53702291	C	T	SNP	AAAS	ENST00000209873	human	ensembl	69_37n	-1	known	missense	c.1109	p.G370E	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914	178	0	0	274	47	14.55	-	-	-	T	53702291	C	T	53702291	3	4	560	1	0	0	0	0	1	0	0	0	8	855	30	2	551	2	AAAS	12	53702291	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	3745505	53702291	80149604	34	49498										
ERCC5	0	genome.wustl.edu	37	chr13	103504559	103504559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	catcttctcactttgtttcaTcggctctgcaaactcttatt	4	12	5	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	13	103504559	103504559	T	G	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	missense	c.180	p.H60Q	1.000	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N,prints_XPGC_DNA_repair,tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	259	0	0	123	42	25.3	-	-	-	G	103504559	T	G	103504559	3	3	560	1	0	0	0	0	1	0	0	0	5253	1432	50	5	186	5	ERCC5	13	103504559	Missense_Mutation	SNP	T	TCGA-BH-A0HX-01A-21W-A071-09		103504559	11665319	35	49499										
TTC5	0	genome.wustl.edu	37	chr14	20764583	20764583	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gatgaaggtcaggattgctaGaagcttttctgtcaactttc	10	7	3	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	14	20764583	20764583	G	C	SNP	TTC5	ENST00000258821	human	ensembl	69_37n	-1	known	missense	c.662	p.S221C	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC5	HGNC	ENSG00000136319	319	0	0	117	46	28.22	-	-	-	C	20764583	G	C	20764583	3	2	560	1	0	0	0	0	1	0	0	0	16808	942	33	2	680	2	TTC5	14	20764583	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		20764583	86584957	36	49500										
PRMT5	0	genome.wustl.edu	37	chr14	23391766	23391766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gcggttgttgtcaatcatagGatctgtcaggaaataattat	10	5	4	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	14	23391766	23391766	G	A	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	missense	c.1582	p.P528S	1.000	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	442	0	0	277	48	14.77	-	-	-	A	23391766	G	A	23391766	3	1	560	1	0	0	0	0	1	0	0	0	12620	1174	41	2	343	2	PRMT5	14	23391766	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	2627183	23391766	83957774	37	49501										
MYH7	0	genome.wustl.edu	37	chr14	23886884	23886884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	cagcttcctgcagccgctggGccagcttcttcctgcccagg	11	17	1	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	14	23886884	23886884	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4181	p.A1394V	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	36	0	0	28	31	52.54	-	-	-	A	23886884	G	A	23886884	3	1	560	1	0	0	0	0	1	0	0	0	10111	1203	42	4	1666	4	MYH7	14	23886884	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	495118	23886884	83462656	38	49502										
LRRC16B	0	genome.wustl.edu	37	chr14	24525586	24525586	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gccctcactctgtcccacaaCcccatcgaggacaagggtga	9	16	2	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	14	24525586	24525586	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	silent	c.849	p.N283	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	21	0	0	10	7	41.18	-	-	-	T	24525586	C	T	24525586	2	4	560	1	0	0	0	0	0	0	0	1	9038	506	18	4		4	LRRC16B	14	24525586	Silent	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	638702	24525586	82823954	39	49503										
UACA	0	genome.wustl.edu	37	chr15	70949465	70949465	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gaacatcttcatccatgtgaCccttcggagaaagaagaaag	9	9	2	4			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	15	70949465	70949465	C	A	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.4181	p.G1394V	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	154	0	0	60	15	20	-	-	-	A	70949465	C	A	70949465	3	1	560	1	0	0	0	0	1	0	0	0	16921	521	18	4	73	4	UACA	15	70949465	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09		70949465	31581927	40	49504										
MAN2A2	0	genome.wustl.edu	37	chr15	91455336	91455338	+	In_Frame_Del	DEL	GAT	GAT	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tgcagctacagctgggcctgGatgggcaccgcacgctgccc							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	15	91455336	91455338	GAT	-	DEL	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	in_frame_del	c.2173_2175	p.D725in_frame_del	0.996:0.984:0.002	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	18	0	0	24	30	55.56	-	-	-	-	91455338	GAT	-	91455336	7	5	560	1	0	1	0	1	0	0	0	0	9286	1174	41	0	2227	0	MAN2A2	15	91455336	In_Frame_Del	DEL	GAT	TCGA-BH-A0HX-01A-21W-A071-09	20505871	91455336	11076056	41	49505			1	88		2	2	14	N	GAT_C	2.351641e-05
MAN2A2	0	genome.wustl.edu	37	chr15	91455349	91455349	+	Frame_Shift_Del	DEL	C	C	-													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gggcctggatgggcaccgcaCgctgccctcctctgtgcgca							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	15	91455349	91455349	C	-	DEL	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	frame_shift_del	c.2186	p.T729fs	0.757	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	21	0	0	25	30	54.55	-	-	-	-	91455349	C	-	91455349	7	5	560	1	0	1	0	1	0	0	0	0	9286	536	19	0	2240	0	MAN2A2	15	91455349	Frame_Shift_Del	DEL	C	TCGA-BH-A0HX-01A-21W-A071-09	13	91455349	11076043	42	49506			1	88		2	2	14	N	GAT_C	2.351641e-05
ATXN2L	0	genome.wustl.edu	37	chr16	28842013	28842013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcgatgcagcagctctcgggGcggtcggcctggccttagct	15	13	1	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	16	28842013	28842013	G	A	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	missense	c.1112	p.G371D	0.991	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	50	0	0	30	14	31.82	-	-	-	A	28842013	G	A	28842013	3	1	560	1	0	0	0	0	1	0	0	0	1216	1203	42	4	1146	4	ATXN2L	16	28842013	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		28842013	61512740	43	49507										
TP53	0	genome.wustl.edu	37	chr17	7578525	7578525	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gggcaggtcttggccagttgGcaaaacatcttgttgagggc	15	8	2	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	17	7578525	7578525	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.405	p.C135W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	83	0	0	24	53	68.83	-	-	-	C	7578525	G	C	7578525	3	2	560	1	0	0	0	0	1	0	0	0	16477	1195	42	4	893	4	TP53	17	7578525	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		7578525	73616685	44	49508										
NBR1	0	genome.wustl.edu	37	chr17	41355736	41355737	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	attgctggaggactggtgaaINSgggggctttgtctgttgctg							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	17	41355736	41355737	-	G	INS	NBR1	ENST00000341165	human	ensembl	69_37n	1	known	frame_shift_ins	c.2660_2661	p.A889fs	1.000:0.968	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554	12	0	0	8	2	20	-	-	-	G	41355737	-	G	41355736	7	5	560	1	0	1	1	0	0	0	0	0	10272	72	3	0	2734	0	NBR1	17	41355736	Frame_Shift_Ins	INS	-	TCGA-BH-A0HX-01A-21W-A071-09	33777211	41355736	39839474	45	49509										
CACNA1G	0	genome.wustl.edu	37	chr17	48694930	48694930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gagggtgctgcgcattgcccGaggttggtgcccagcccacg	16	13	0	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	17	48694930	48694930	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.5153	p.R1718Q	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	29	0	0	37	21	36.21	-	-	-	A	48694930	G	A	48694930	3	1	560	1	0	0	0	0	1	0	0	0	2569	1058	37	1	5534	1	CACNA1G	17	48694930	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	7339194	48694930	32500280	46	49510										
HELZ	0	genome.wustl.edu	37	chr17	65074482	65074482	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tgctcaggagggggcctgggCtttggaggggcccgcagagc	20	10	1	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	17	65074482	65074482	C	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	silent	c.5715	p.K1905	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	102	1	0.96	143	19	11.59	-	-	-	T	65074482	C	T	65074482	2	4	560	1	0	0	0	0	0	0	0	1	7100	796	28	4		4	HELZ	17	65074482	Silent	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	16379552	65074482	16120728	47	49511										
ASXL3	0	genome.wustl.edu	37	chr18	31325065	31325065	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gctaacaatccgctggtgacGcagttactacagggcaacct	10	12	0	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	18	31325065	31325065	G	C	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	silent	c.5253	p.T1751	0.846	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	80	0	0	63	10	13.7	-	-	-	C	31325065	G	C	31325065	2	2	560	1	0	0	0	0	0	0	0	1	1072	1074	38	3		3	ASXL3	18	31325065	Silent	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		31325065	46752183	48	49512										
CNDP1	0	genome.wustl.edu	37	chr18	72244205	72244205	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	atacatacaaagccatccatCtagacctagaagaataccgg	6	11	1	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	18	72244205	72244205	C	G	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	missense	c.943	p.L315V	0.653	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	276	1	0.36	138	21	13.21	-	-	-	G	72244205	C	G	72244205	3	3	560	1	0	0	0	0	1	0	0	0	3623	912	32	2	973	2	CNDP1	18	72244205	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	40919140	72244205	5833043	49	49513										
ZNF540	0	genome.wustl.edu	37	chr19	38103478	38103478	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tcagagtacattctagaattCatactggagagaaaccatat	7	7	3	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	19	38103478	38103478	C	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1297	p.H433N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	184	0	0	82	80	49.38	-	-	-	A	38103478	C	A	38103478	3	1	560	1	0	0	0	0	1	0	0	0	18071	826	29	2	1311	2	ZNF540	19	38103478	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09		38103478	21025505	50	49514										
AP2A1	0	genome.wustl.edu	37	chr19	50295238	50295238	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gtgcggccctgtgcctccttCgactgtacaaggcctcgcct	11	16	0	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	19	50295238	50295238	C	T	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	nonsense	c.520	p.R174*	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	32	0	0	12	8	38.1	-	-	-	T	50295238	C	T	50295238	4	4	560	1	0	0	0	0	0	1	0	0	740	876	31	1	538	1	AP2A1	19	50295238	Nonsense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	12191760	50295238	8833745	51	49515										
ZNF320	0	genome.wustl.edu	37	chr19	53384808	53384808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	agccttgtcgcaaaccttacAtttgtatggtttctctccag	7	11	1	0			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	19	53384808	53384808	A	G	SNP	ZNF320	ENST00000391781	human	ensembl	69_37n	-1	known	missense	c.571	p.C191R	0.802	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	300	0	0	287	60	17.29	-	-	-	G	53384808	A	G	53384808	3	3	560	1	0	0	0	0	1	0	0	0	17935	217	8	5	962	5	ZNF320	19	53384808	Missense_Mutation	SNP	A	TCGA-BH-A0HX-01A-21W-A071-09	3089570	53384808	5744175	52	49516										
CRYBB1	0	genome.wustl.edu	37	chr22	27008076	27008076	+	Missense_Mutation	SNP	C	C	A													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gctgcgcacacggtcgaagcCacggtctgccagatttgagc							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	22	27008076	27008076	C	A	SNP	CRYBB1	ENST00000215939	human	ensembl	69_37n	-1	known	missense	c.259	p.G87C	0.997	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122	230	0	0	160	39	19.6	-	-	-	A	27008076	C	A	27008076	3	1	560	1	0	0	0	0	1	0	0	0	3940	594	21	4	515	4	CRYBB1	22	27008076	Missense_Mutation	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09		27008076	24296490	53	49517	417	2								
CRYBB1	0	genome.wustl.edu	37	chr22	27008077	27008077	+	Silent	SNP	A	A	G													0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	ctgcgcacacggtcgaagccAcggtctgccagatttgagca							TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	22	27008077	27008077	A	G	SNP	CRYBB1	ENST00000215939	human	ensembl	69_37n	-1	known	silent	c.258	p.R86	0.339	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122	227	0	0	161	38	19.1	-	-	-	G	27008077	A	G	27008077	2	3	560	1	0	0	0	0	0	0	0	1	3940	146	6	5		5	CRYBB1	22	27008077	Silent	SNP	A	TCGA-BH-A0HX-01A-21W-A071-09	1	27008077	24296489	54	49518	417	2								
TLR7	0	genome.wustl.edu	37	chrX	12905642	12905642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	gccttctggagtttttgatgGtatgcctccaaatctaaaga	9	8	2	2			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	X	12905642	12905642	G	A	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.2015	p.G672D	0.528	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	498	1	0.2	181	116	38.8	-	-	-	A	12905642	G	A	12905642	3	1	560	1	0	0	0	0	1	0	0	0	16051	1261	44	4	2021	4	TLR7	23	12905642	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09		12905642	142364918	55	49519										
PPEF1	0	genome.wustl.edu	37	chrX	18822016	18822016	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	tttgttgttccaagattattGatattctgtggagtgatccc	9	6	1	3			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	X	18822016	18822016	G	C	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1072	p.D358H	0.958	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	231	0	0	116	23	16.55	-	-	-	C	18822016	G	C	18822016	3	2	560	1	0	0	0	0	1	0	0	0	12380	1290	45	2	1114	2	PPEF1	23	18822016	Missense_Mutation	SNP	G	TCGA-BH-A0HX-01A-21W-A071-09	5916374	18822016	136448544	56	49520										
RPGR	0	genome.wustl.edu	37	chrX	38160625	38160625	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107142857142857	6	0.615967799472924	1.32471264367816	2.32828282828283	0.71141975308642	0.608391608391609	1	0	agtatacataaggccgatatCtaaaatgcaaaaataatgaa	6	5	1	1			TCGA-BH-A0HX-01A-21W-A071-09	TCGA-BH-A0HX-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27df78cd-1f39-42f3-92e6-56664d4c472c	ec32084a-c085-4ef6-b50e-212ae61944ec	X	38160625	38160625	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	splice_site	c.935-1	e9-1	1.000	-	-	-	no_errors	RPGR	HGNC	ENSG00000156313	85	0	0	55	7	11.29	-	-	-	A	38160625	C	A	38160625	5	1	560	1	0	0	0	0	0	0	1	0	13634	927	32	2	3111	2	RPGR	23	38160625	Splice_Site	SNP	C	TCGA-BH-A0HX-01A-21W-A071-09	19338609	38160625	117109935	57	49521										
RBM8A	0	genome.wustl.edu	37	chr1	145507682	145507682	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gcgagatggcggacgtgctaGatcttcacgaggctgggggc	18	9	2	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	145507682	145507682	G	A	SNP	RBM8A	ENST00000330165	human	ensembl	69_37n	1	known	missense	c.16	p.D6N	1.000	NULL	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom,prints_RNA-bd_8	-	no_errors	RBM8A	HGNC	ENSG00000131795	17	0	0	25	5	16.67	-	-	-	A	145507682	G	A	145507682	3	1	561	1	0	0	0	0	1	0	0	0	13229	942	33	2	18	2	RBM8A	1	145507682	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		145507682	103742939	1	49522										
PKLR	0	genome.wustl.edu	37	chr1	155265012	155265012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gtccacccacacggtgttcgCgttcccccgcgtccggaacg	11	18	0	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	155265012	155265012	C	T	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.589	p.A197T	0.995	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	79	0	0	117	31	20.67	-	-	-	T	155265012	C	T	155265012	3	4	561	1	0	0	0	0	1	0	0	0	12050	768	27	1	1163	1	PKLR	1	155265012	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	9757330	155265012	93985609	2	49523										
GORAB	0	genome.wustl.edu	37	chr1	170521254	170521254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	actcactgaacacctttgtaCgatcatacagcaaaatgagc	6	11	2	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	170521254	170521254	C	T	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.836	p.T279M	1.000	pfam_Golgin_RAB6-interacting	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	156	0	0	236	40	14.49	-	-	-	T	170521254	C	T	170521254	3	4	561	1	0	0	0	0	1	0	0	0	6623	536	19	1	858	1	GORAB	1	170521254	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	15256242	170521254	78729367	3	49524										
EIF2B4	0	genome.wustl.edu	37	chr2	27591877	27591877	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	aatgaagggaagatacctgaGggggtttctccagctgtgct	14	7	1	3			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	27591877	27591877	G	A	SNP	EIF2B4	ENST00000347454	human	ensembl	69_37n	-1	known	silent	c.414	p.P138	0.941	NULL	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211	49	0	0	72	16	18.18	-	-	-	A	27591877	G	A	27591877	2	1	561	1	0	0	0	0	0	0	0	1	5038	987	35	4		4	EIF2B4	2	27591877	Silent	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		27591877	215607496	4	49525										
SLC4A1AP	0	genome.wustl.edu	37	chr2	27910885	27910885	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttcattgtgcgcaggaccctCaggcaagtagtacggcagcc	12	12	2	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	27910885	27910885	C	A	SNP	SLC4A1AP	ENST00000326019	human	ensembl	69_37n	1	known	nonsense	c.2201	p.S734*	1.000	NULL	pfam_FHA_dom,pfam_Ds-RNA-bd,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798	107	0	0	87	18	17.14	-	-	-	A	27910885	C	A	27910885	4	1	561	1	0	0	0	0	0	1	0	0	14742	838	29	2	2243	2	SLC4A1AP	2	27910885	Nonsense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	319008	27910885	215288488	5	49526										
REG1A	0	genome.wustl.edu	37	chr2	79349250	79349250	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tggcctccatgaccccaaaaAggtaggctgcagccttcttt	9	13	1	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	79349250	79349250	A	C	SNP	REG1A	ENST00000233735	human	ensembl	69_37n	1	known	missense	c.320	p.K107T	0.953	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386	129	0	0	43	29	40.28	-	-	-	C	79349250	A	C	79349250	3	2	561	1	0	0	0	0	1	0	0	0	13293	86	3	5	330	5	REG1A	2	79349250	Missense_Mutation	SNP	A	TCGA-BH-A0HY-01A-11W-A071-09	51438365	79349250	163850123	6	49527										
HECW2	0	genome.wustl.edu	37	chr2	197080599	197080599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tatattttacctgggaagagCagtgattttcccccatttct	7	9	1	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	197080599	197080599	C	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.4597	p.A1533S	0.980	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	121	0	0	83	34	29.06	-	-	-	A	197080599	C	A	197080599	3	1	561	1	0	0	0	0	1	0	0	0	7094	710	25	4	129	4	HECW2	2	197080599	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	117731349	197080599	46118774	7	49528										
SF3B1	0	genome.wustl.edu	37	chr2	198266542	198266542	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttaacatcacttctctagtaTagtagttggcatattctgca	6	8	3	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	198266542	198266542	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2294	p.Y765C	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	211	0	0	219	72	24.74	-	-	-	C	198266542	T	C	198266542	3	2	561	1	0	0	0	0	1	0	0	0	14237	1406	49	5	1660	5	SF3B1	2	198266542	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	1185943	198266542	44932831	8	49529										
C2orf47	0	genome.wustl.edu	37	chr2	200820884	200820884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttctccaaccccatcaactgGgttaggactcgaattaaggc	8	12	2	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	200820884	200820884	G	T	SNP	C2orf47	ENST00000295079	human	ensembl	69_37n	1	known	missense	c.363	p.W121C	1.000	NULL	NULL	-	no_errors	C2orf47	HGNC	ENSG00000162972	72	0	0	41	47	52.81	-	-	-	T	200820884	G	T	200820884	3	4	561	1	0	0	0	0	1	0	0	0	2189	1241	43	4	365	4	C2orf47	2	200820884	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	2554342	200820884	42378489	9	49530										
TBC1D5	0	genome.wustl.edu	37	chr3	17415993	17415993	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tcatgctcaaaagttgaaaaCcaaggttcagcagtttccat	7	9	3	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	17415993	17415993	C	T	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	nonsense	c.792	p.W264*	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	56	0	0	87	18	17.14	-	-	-	T	17415993	C	T	17415993	4	4	561	1	0	0	0	0	0	1	0	0	15718	508	18	4	1709	4	TBC1D5	3	17415993	Nonsense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		17415993	180606437	10	49531										
ACPP	0	genome.wustl.edu	37	chr3	132047117	132047117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	acatctactttcaggtgtttCggcatggagaccgaagtccc	10	11	2	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	132047117	132047117	C	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.127	p.R43W	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	63	0	0	79	14	15.05	-	-	-	T	132047117	C	T	132047117	3	4	561	1	0	0	0	0	1	0	0	0	167	875	31	1	133	1	ACPP	3	132047117	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	114631124	132047117	65975313	11	49532										
SERPINI1	0	genome.wustl.edu	37	chr3	167510446	167510446	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	atctggccctcattaatgctGtctatttcaaggggaactgg	10	9	4	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	167510446	167510446	G	T	SNP	SERPINI1	ENST00000295777	human	ensembl	69_37n	1	known	missense	c.550	p.V184F	0.998	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536	120	0	0	150	28	15.73	-	-	-	T	167510446	G	T	167510446	3	4	561	1	0	0	0	0	1	0	0	0	14206	1377	48	4	560	4	SERPINI1	3	167510446	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	35463329	167510446	30511984	12	49533										
TPPP	0	genome.wustl.edu	37	chr5	677867	677867	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tgagcccagcgcactcacttGatcttgctgaagacgatgtc	10	12	2	4			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	677867	677867	G	C	SNP	TPPP	ENST00000360578	human	ensembl	69_37n	-1	known	missense	c.309	p.I103M	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP	HGNC	ENSG00000171368	8	0	0	1	4	80	-	-	-	C	677867	G	C	677867	3	2	561	1	0	0	0	0	1	0	0	0	16509	1280	45	2	362	2	TPPP	5	677867	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		677867	180237393	13	49534										
CDH18	0	genome.wustl.edu	37	chr5	19483502	19483502	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	cttctgcatggcaggtccgcAcacgcccatctctctcgcat	8	17	3	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	19483502	19483502	A	C	SNP	CDH18	ENST00000274170	human	ensembl	69_37n	-1	known	missense	c.1790	p.V597G	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526	48	0	0	72	14	16.28	-	-	-	C	19483502	A	C	19483502	3	2	561	1	0	0	0	0	1	0	0	0	3132	159	6	5	590	5	CDH18	5	19483502	Missense_Mutation	SNP	A	TCGA-BH-A0HY-01A-11W-A071-09	18805635	19483502	161431758	14	49535										
RICTOR	0	genome.wustl.edu	37	chr5	39002728	39002728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	aagcgctcgtagccctgctgCtcgcacttcttttgcttcat	8	14	2	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	39002728	39002728	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.301	p.A101T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	326	0	0	581	98	14.43	-	-	-	T	39002728	C	T	39002728	3	4	561	1	0	0	0	0	1	0	0	0	13442	797	28	4	4961	4	RICTOR	5	39002728	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	19519226	39002728	141912532	15	49536										
SLC38A9	0	genome.wustl.edu	37	chr5	54931405	54931405	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tctttggataatggtggtgaAggaaatgaagcaaaaaccag	12	4	1	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	54931405	54931405	A	G	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	silent	c.1248	p.P416	0.901	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	72	0	0	43	7	14	-	-	-	G	54931405	A	G	54931405	2	3	561	1	0	0	0	0	0	0	0	1	14700	59	3	5		5	SLC38A9	5	54931405	Silent	SNP	A	TCGA-BH-A0HY-01A-11W-A071-09	15928677	54931405	125983855	16	49537										
PPIP5K2	0	genome.wustl.edu	37	chr5	102502945	102502945	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttaattaaaaaccctgtgaaGacctgtgataaagtttattc	6	6	0	3			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	102502945	102502945	G	A	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	silent	c.1983	p.K661	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	157	0	0	111	50	31.06	-	-	-	A	102502945	G	A	102502945	2	1	561	1	0	0	0	0	0	0	0	1	12410	933	33	2		2	PPIP5K2	5	102502945	Silent	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	47571540	102502945	78412315	17	49538										
PCDHA4	0	genome.wustl.edu	37	chr5	140187582	140187582	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	cttaacgcctcagatttagaCgaaggattgaatggggacat	11	7	1	3			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	140187582	140187582	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.810	p.D270	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	93	0	0	130	33	20	-	-	-	T	140187582	C	T	140187582	2	4	561	1	0	0	0	0	0	0	0	1	11599	535	19	1		1	PCDHA4	5	140187582	Silent	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	37684637	140187582	40727678	18	49539										
GEMIN5	0	genome.wustl.edu	37	chr5	154282237	154282237	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	attttctaagtgaccttttcCtgtttgaaagagagataatg	8	5	1	4			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	154282237	154282237	C	A	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	splice_site	c.2729-1	e20-1	1.000	-	-	-	no_errors	GEMIN5	HGNC	ENSG00000082516	149	0	0	136	52	27.66	-	-	-	A	154282237	C	A	154282237	5	1	561	1	0	0	0	0	0	0	1	0	6383	695	24	4	1834	4	GEMIN5	5	154282237	Splice_Site	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	14094655	154282237	26633023	19	49540										
NSD1	0	genome.wustl.edu	37	chr5	176721812	176721812	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gtcacaccacaggctgatgaGaagatgccagtgttggagtc	13	9	1	3			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	176721812	176721812	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	silent	c.7443	p.E2481	0.991	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	66	0	0	91	31	25.41	-	-	-	A	176721812	G	A	176721812	2	1	561	1	0	0	0	0	0	0	0	1	10742	933	33	2		2	NSD1	5	176721812	Silent	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	22439575	176721812	4193448	20	49541										
UBD	0	genome.wustl.edu	37	chr6	29523762	29523762	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ctctttccattgcaagtcacAatctgggtctcagggattat	8	10	4	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	6	29523762	29523762	A	G	SNP	UBD	ENST00000377050	human	ensembl	69_37n	-1	known	silent	c.393	p.I131	0.182	pfam_Ubiquitin,smart_Ubiquitin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,smart_Ubiquitin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	UBD	HGNC	ENSG00000213886	238	0	0	253	50	16.5	-	-	-	G	29523762	A	G	29523762	2	3	561	1	0	0	0	0	0	0	0	1	16940	126	5	5		5	UBD	6	29523762	Silent	SNP	A	TCGA-BH-A0HY-01A-11W-A071-09		29523762	141591305	21	49542										
BACH2	0	genome.wustl.edu	37	chr6	90660896	90660896	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	cagggctgggctgtttccggTccatctcgacatcccccgct	11	16	1	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	6	90660896	90660896	T	G	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.929	p.D310A	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	93	0	0	37	31	45.59	-	-	-	G	90660896	T	G	90660896	3	3	561	1	0	0	0	0	1	0	0	0	1288	1667	58	5	1608	5	BACH2	6	90660896	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	61137134	90660896	80454171	22	49543										
ZNF425	0	genome.wustl.edu	37	chr7	148802088	148802088	+	Frame_Shift_Del	DEL	T	T	-													0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ccccgcggtgtagacacaggTgcttcttcaggttggccctg							TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	7	148802088	148802088	T	-	DEL	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	frame_shift_del	c.875	p.H292fs	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	33	0	0	50	26	32.91	-	-	-	-	148802088	T	-	148802088	7	5	561	1	0	1	0	1	0	0	0	0	17995	1696	59	0	1387	0	ZNF425	7	148802088	Frame_Shift_Del	DEL	T	TCGA-BH-A0HY-01A-11W-A071-09		148802088	10336575	23	49544										
ZNF467	0	genome.wustl.edu	37	chr7	149467612	149467613	+	Frame_Shift_Ins	INS	-	-	G													0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tccttccctgggctcactttINSggggggccatctctggctgt							TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	7	149467612	149467613	-	G	INS	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	frame_shift_ins	c.68_67	p.Q23fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	11	0	0	11	2	15.38	-	-	-	G	149467613	-	G	149467612	7	5	561	1	0	1	1	0	0	0	0	0	18023	1812	63	0	1731	0	ZNF467	7	149467612	Frame_Shift_Ins	INS	-	TCGA-BH-A0HY-01A-11W-A071-09	665524	149467612	9671051	24	49545										
ZFHX4	0	genome.wustl.edu	37	chr8	77767190	77767190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	acagtctcataaacggtgtcCgttttgccgagccctgttta	9	11	1	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	8	77767190	77767190	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.8033	p.P2678L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	70	0	0	78	17	17.89	-	-	-	T	77767190	C	T	77767190	3	4	561	1	0	0	0	0	1	0	0	0	17731	652	23	1	8067	1	ZFHX4	8	77767190	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		77767190	68596832	25	49546										
MMP16	0	genome.wustl.edu	37	chr8	89086840	89086840	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	aaaacatccttacctttaaaGaacacaaaattcccgtcgct	3	12	0	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	8	89086840	89086840	G	T	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.1215	p.F405L	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	189	0	0	279	73	20.74	-	-	-	T	89086840	G	T	89086840	3	4	561	1	0	0	0	0	1	0	0	0	9726	933	33	2	780	2	MMP16	8	89086840	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	11319650	89086840	57277182	26	49547										
MAMDC2	0	genome.wustl.edu	37	chr9	72723399	72723399	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	acagttccaagaaattcaagGtaggtggagtttaggagaaa	12	4	1	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	9	72723399	72723399	G	T	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	splice_site	c.420+1	e3+1	1.000	-	-	-	no_errors	MAMDC2	HGNC	ENSG00000165072	150	0	0	181	36	16.59	-	-	-	T	72723399	G	T	72723399	5	4	561	1	0	0	0	0	0	0	1	0	9274	1275	44	4	431	4	MAMDC2	9	72723399	Splice_Site	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		72723399	68490032	27	49548										
NUP160	0	genome.wustl.edu	37	chr11	47861966	47861966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gaggggtgtggtaaaagtaaCctgtgcactgtttgattggt	15	4	0	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	11	47861966	47861966	C	A	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.489	p.R163S	0.004	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	519	0	0	319	37	10.36	-	-	-	A	47861966	C	A	47861966	3	1	561	1	0	0	0	0	1	0	0	0	10830	506	18	4	3957	4	NUP160	11	47861966	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		47861966	87144550	28	49549										
OR4C16	0	genome.wustl.edu	37	chr11	55340113	55340113	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttgccattctgtggccccaaTgtgatcaatcactgtttctg	8	11	4	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	11	55340113	55340113	T	A	SNP	OR4C16	ENST00000314634	human	ensembl	69_37n	1	known	missense	c.510	p.N170K	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	210	0	0	210	43	17	-	-	-	A	55340113	T	A	55340113	3	1	561	1	0	0	0	0	1	0	0	0	11122	1461	51	5	512	5	OR4C16	11	55340113	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	7478147	55340113	79666403	29	49550										
CHD4	0	genome.wustl.edu	37	chr12	6697539	6697539	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gtggccagattgattccaagGcccccagctcgagtggaaag	13	11	0	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	6697539	6697539	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.3390	p.G1130	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	160	0	0	118	53	30.99	-	-	-	A	6697539	G	A	6697539	2	1	561	1	0	0	0	0	0	0	0	1	3356	1190	42	4		4	CHD4	12	6697539	Silent	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		6697539	127154356	30	49551										
PTHLH	0	genome.wustl.edu	37	chr12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-													0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gtgttcttctgttgttttccTttttttttttcaaaccccac							TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	14	0	0	29	4	12.12	-	-	-	-	28114898	T	-	28114898	7	5	561	1	0	1	0	1	0	0	0	0	12842	1624	56	0		0	PTHLH	12	28114898	Frame_Shift_Del	DEL	T	TCGA-BH-A0HY-01A-11W-A071-09	21417359	28114898	105736997	31	49552										
PKP2	0	genome.wustl.edu	37	chr12	32955486	32955486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ctgtctgagccactgatgtcGgcatctgttttgtgagacat	11	9	2	3			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	32955486	32955486	G	A	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	missense	c.2150	p.P717L	0.993	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	192	0	0	136	56	29.17	-	-	-	A	32955486	G	A	32955486	3	1	561	1	0	0	0	0	1	0	0	0	12059	1116	39	1	511	1	PKP2	12	32955486	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	4840588	32955486	100896409	32	49553										
TSPAN8	0	genome.wustl.edu	37	chr12	71519153	71519153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	caatacaggaccatagaaaaCaccaaacccagtatctagag	6	11	1	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	71519153	71519153	C	T	SNP	TSPAN8	ENST00000247829	human	ensembl	69_37n	-1	known	silent	c.675	p.V225	0.998	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN8	HGNC	ENSG00000127324	164	0	0	276	44	13.75	-	-	-	T	71519153	C	T	71519153	2	4	561	1	0	0	0	0	0	0	0	1	16749	465	17	4		4	TSPAN8	12	71519153	Silent	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	38563667	71519153	62332742	33	49554										
KDM2B	0	genome.wustl.edu	37	chr12	121878692	121878692	+	Frame_Shift_Del	DEL	A	A	-													0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	agtccctccacccactggacAtccagggtccggagcagcgg							TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	121878692	121878692	A	-	DEL	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	frame_shift_del	c.3537	p.D1179fs	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	21	0	0	21	8	26.67	-	-	-	-	121878692	A	-	121878692	7	5	561	1	0	1	0	1	0	0	0	0	8179	214	8	0	537	0	KDM2B	12	121878692	Frame_Shift_Del	DEL	A	TCGA-BH-A0HY-01A-11W-A071-09	50359539	121878692	11973203	34	49555										
HTR2A	0	genome.wustl.edu	37	chr13	47466593	47466593	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tggagttgaagcggctgtggTggatgggattctggatggcg	20	4	1	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	13	47466593	47466593	T	C	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	missense	c.545	p.H182R	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	313	1	0.31	217	203	47.88	-	-	-	C	47466593	T	C	47466593	3	2	561	1	0	0	0	0	1	0	0	0	7495	1696	59	5	878	5	HTR2A	13	47466593	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09		47466593	67703285	35	49556										
DCAF11	0	genome.wustl.edu	37	chr14	24586486	24586486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tactcacagtggatgctaccCctgacacccgggagctggaa	11	13	1	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	14	24586486	24586486	C	T	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.295	p.P99S	1.000	pirsf_WD_repeat_p23	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	57	0	0	54	16	22.86	-	-	-	T	24586486	C	T	24586486	3	4	561	1	0	0	0	0	1	0	0	0	4294	623	22	4	305	4	DCAF11	14	24586486	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		24586486	82763054	36	49557										
AKAP6	0	genome.wustl.edu	37	chr14	33004940	33004940	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gggagcgcattctgcaaggtCtgcaggacgccaatggcaac	14	11	2	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	14	33004940	33004940	C	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.505	p.L169M	0.993	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	162	0	0	172	66	27.73	-	-	-	A	33004940	C	A	33004940	3	1	561	1	0	0	0	0	1	0	0	0	455	912	32	2	511	2	AKAP6	14	33004940	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09	8418454	33004940	74344600	37	49558										
MYH11	0	genome.wustl.edu	37	chr16	15853452	15853452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	cctcaaagatctcaaatccaGctatatccaggatccccagg	6	14	2	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	16	15853452	15853452	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.1403	p.A468D	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	261	0	0	195	75	27.78	-	-	-	T	15853452	G	T	15853452	3	4	561	1	0	0	0	0	1	0	0	0	10103	971	34	4	4691	4	MYH11	16	15853452	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09		15853452	74501301	38	49559										
OSBPL7	0	genome.wustl.edu	37	chr17	45895952	45895952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gtgggcacgcagctgcgccaCccagctctggaataggtcct	13	14	1	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	17	45895952	45895952	C	T	SNP	OSBPL7	ENST00000007414	human	ensembl	69_37n	-1	known	missense	c.400	p.V134M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL7	HGNC	ENSG00000006025	21	0	0	26	6	18.75	-	-	-	T	45895952	C	T	45895952	3	4	561	1	0	0	0	0	1	0	0	0	11355	507	18	4	2200	4	OSBPL7	17	45895952	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		45895952	35299258	39	49560										
ALPK2	0	genome.wustl.edu	37	chr18	56203182	56203182	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttttccagccctggtgtactCtatcacacttatctcatcaa	4	13	4	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	18	56203182	56203182	C	G	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.4237	p.E1413Q	0.003	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	132	0	0	103	24	18.9	-	-	-	G	56203182	C	G	56203182	3	3	561	1	0	0	0	0	1	0	0	0	545	922	32	2	2311	2	ALPK2	18	56203182	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		56203182	21874066	40	49561										
LILRA2	0	genome.wustl.edu	37	chr19	55086420	55086420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gagcccgagtcgcaggtggtCgtacaggtgctatgcttatg	15	9	0	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	19	55086420	55086420	C	T	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	missense	c.575	p.S192L	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	136	0	0	37	43	53.75	-	-	-	T	55086420	C	T	55086420	3	4	561	1	0	0	0	0	1	0	0	0	8840	893	31	1	589	1	LILRA2	19	55086420	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		55086420	4042563	41	49562										
C20orf118	0	genome.wustl.edu	37	chr20	35507557	35507558	+	Frame_Shift_Ins	INS	-	-	T													0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ggcggatggagggctgcagcINSgggccagtgctgctggtgct							TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	20	35507557	35507558	-	T	INS	C20orf118	ENST00000217320	human	ensembl	69_37n	1	known	frame_shift_ins	c.303_304	p.G101fs	0.114:0.856	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	C20orf118	HGNC	ENSG00000101342	38	0	0	53	10	15.87	-	-	-	T	35507558	-	T	35507557	7	5	561	1	0	1	1	0	0	0	0	0	2104	767	27	0	313	0	C20orf118	20	35507557	Frame_Shift_Ins	INS	-	TCGA-BH-A0HY-01A-11W-A071-09		35507557	27517963	42	49563										
RRP1	0	genome.wustl.edu	37	chr21	45213278	45213278	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	caggctgcgcctggataaatTctacatggtgaggcagccac	12	11	1	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	21	45213278	45213278	T	G	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	1	known	missense	c.353	p.F118C	1.000	pfam_Nop52	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	18	0	0	8	8	50	-	-	-	G	45213278	T	G	45213278	3	3	561	1	0	0	0	0	1	0	0	0	13771	1783	62	5	367	5	RRP1	21	45213278	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09		45213278	2916617	43	49564										
TRAPPC10	0	genome.wustl.edu	37	chr21	45513998	45513998	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gggaactcaagtggacagaaGagcctcccccttctctgcat	10	13	2	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	21	45513998	45513998	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.3052	p.E1018K	0.992	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	94	0	0	61	11	15.28	-	-	-	A	45513998	G	A	45513998	3	1	561	1	0	0	0	0	1	0	0	0	16553	943	33	2	3130	2	TRAPPC10	21	45513998	Missense_Mutation	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	300720	45513998	2615897	44	49565										
SLC9A7	0	genome.wustl.edu	37	chrX	46491044	46491044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	ttgtaagacttgaaagctgtCgttgttgggtggtgggtctt	15	4	1	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	46491044	46491044	C	T	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	missense	c.1714	p.D572N	1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	68	0	0	47	12	20.34	-	-	-	T	46491044	C	T	46491044	3	4	561	1	0	0	0	0	1	0	0	0	14808	884	31	1	479	1	SLC9A7	23	46491044	Missense_Mutation	SNP	C	TCGA-BH-A0HY-01A-11W-A071-09		46491044	108779516	45	49566										
ODZ1	0	genome.wustl.edu	37	chrX	123615597	123615597	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	tttacctcgagggctattcaGtgaagcttccgatgctctcc	9	12	2	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	123615597	123615597	G	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.3934	p.L1312	0.972	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	177	0	0	173	50	22.42	-	-	-	A	123615597	G	A	123615597	2	1	561	1	0	0	0	0	0	0	0	1	10907	1020	36	4		4	ODZ1	23	123615597	Silent	SNP	G	TCGA-BH-A0HY-01A-11W-A071-09	77124553	123615597	31654963	46	49567										
ZNF280C	0	genome.wustl.edu	37	chrX	129349834	129349834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gcttttgcttgtaagagggtTttgctttggacttagctata	11	5	0	1			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	129349834	129349834	T	C	SNP	ZNF280C	ENST00000370978	human	ensembl	69_37n	-1	known	missense	c.1769	p.K590R	0.069	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277	696	0	0	378	341	47.43	-	-	-	C	129349834	T	C	129349834	3	2	561	1	0	0	0	0	1	0	0	0	17912	1841	64	5	468	5	ZNF280C	23	129349834	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	5734237	129349834	25920726	47	49568										
SAGE1	0	genome.wustl.edu	37	chrX	134990730	134990730	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	aatgttctatccgggcttatTaatatggcaggagctagtat	10	6	1	0			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	134990730	134990730	T	G	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.1395	p.I465M	0.005	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	264	0	0	212	63	22.74	-	-	-	G	134990730	T	G	134990730	3	3	561	1	0	0	0	0	1	0	0	0	13895	1742	61	5	1437	5	SAGE1	23	134990730	Missense_Mutation	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	5640896	134990730	20279830	48	49569										
CXorf66	0	genome.wustl.edu	37	chrX	139038667	139038667	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122448979591837	6	0.234028692705567	1.9992486851991	7.33057851239669	1.46611570247934	0.619909502262444	1	0	gatgacctttttggatatgaTggcctagttaactttcctgc	9	8	0	2			TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	139038667	139038667	T	C	SNP	CXorf66	ENST00000370540	human	ensembl	69_37n	-1	known	silent	c.474	p.P158	0.000	NULL	NULL	-	no_errors	CXorf66	HGNC	ENSG00000203933	548	0	0	376	334	46.91	-	-	-	C	139038667	T	C	139038667	2	2	561	1	0	0	0	0	0	0	0	1	4149	1451	51	5		5	CXorf66	23	139038667	Silent	SNP	T	TCGA-BH-A0HY-01A-11W-A071-09	4047937	139038667	16231893	49	49570										
POLR3C	0	genome.wustl.edu	37	chr1	145608467	145608467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	agctgacattgtcagtttgcCgttcaacagaagctcctcaa	8	11	3	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	145608467	145608467	C	T	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.340	p.G114S	1.000	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	89	0	0	133	22	14.19	-	-	-	T	145608467	C	T	145608467	3	4	562	1	0	0	0	0	1	0	0	0	12304	652	23	1	1316	1	POLR3C	1	145608467	Missense_Mutation	SNP	C	TCGA-BH-A0RX-01A-21D-A099-09		145608467	103642154	1	49571										
VANGL2	0	genome.wustl.edu	37	chr1	160389104	160389104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	gcagctgggctctgttcttcCgccggcccaaggcctcgctg	13	16	2	0			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	160389104	160389104	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.505	p.R169C	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	78	0	0	93	19	16.96	-	-	-	T	160389104	C	T	160389104	3	4	562	1	0	0	0	0	1	0	0	0	17217	652	23	1	515	1	VANGL2	1	160389104	Missense_Mutation	SNP	C	TCGA-BH-A0RX-01A-21D-A099-09	14780637	160389104	88861517	2	49572										
FAM117B	0	genome.wustl.edu	37	chr2	203591033	203591036	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	gcagtcggcatcatcgagatAaagaaagacagtctccattt							TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	2	203591033	203591036	AAAG	-	DEL	FAM117B	ENST00000392238	human	ensembl	69_37n	1	known	frame_shift_del	c.907_910	p.E304fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	85	0	0	117	13	10	-	-	-	-	203591036	AAAG	-	203591033	7	5	562	1	0	1	0	1	0	0	0	0	5450	363	13	0	921	0	FAM117B	2	203591033	Frame_Shift_Del	DEL	AAAG	TCGA-BH-A0RX-01A-21D-A099-09		203591033	39608340	3	49573										
SPATA18	0	genome.wustl.edu	37	chr4	52946023	52946023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	tgcattgcctttgcaatgcaGgccttagaaccacccctaga	8	13	0	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	4	52946023	52946023	G	C	SNP	SPATA18	ENST00000295213	human	ensembl	69_37n	1	known	missense	c.1293	p.Q431H	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	69	0	0	114	15	11.54	-	-	-	C	52946023	G	C	52946023	3	2	562	1	0	0	0	0	1	0	0	0	15094	991	35	4	1327	4	SPATA18	4	52946023	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		52946023	138208253	4	49574										
FAM53C	0	genome.wustl.edu	37	chr5	137681156	137681162	+	Frame_Shift_Del	DEL	GGCGACC	GGCGACC	-													0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	atcctccccagagctgccctGgcgacctcgaggtctccgca							TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GGCGACC	GGCGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	5	137681156	137681162	GGCGACC	-	DEL	FAM53C	ENST00000239906	human	ensembl	69_37n	1	known	frame_shift_del	c.779_785	p.W260fs	1.000:1.000:1.000:1.000:1.000:1.000:0.793	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	39	0	0	48	11	18.64	-	-	-	-	137681162	GGCGACC	-	137681156	7	5	562	1	0	1	0	1	0	0	0	0	5627	1357	47	0	789	0	FAM53C	5	137681156	Frame_Shift_Del	DEL	GGCGACC	TCGA-BH-A0RX-01A-21D-A099-09		137681156	43234104	5	49575										
ITPR3	0	genome.wustl.edu	37	chr6	33655053	33655053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	gaggaagagcgtgagaactcGgaggtgagcccacgtgaagt	17	7	0	4			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	6	33655053	33655053	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	silent	c.6126	p.S2042	0.003	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	62	0	0	59	12	16.9	-	-	-	A	33655053	G	A	33655053	2	1	562	1	0	0	0	0	0	0	0	1	7976	1103	39	1		1	ITPR3	6	33655053	Silent	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		33655053	137460014	6	49576										
CARD11	0	genome.wustl.edu	37	chr7	2987388	2987388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	cgtcctcttcatccttcagcGtctccatgtagtcatccatc	5	16	5	0			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	2987388	2987388	G	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.41	p.T14M	0.982	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	125	0	0	136	22	13.92	-	-	-	A	2987388	G	A	2987388	3	1	562	1	0	0	0	0	1	0	0	0	2670	1145	40	1	3515	1	CARD11	7	2987388	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		2987388	156151275	7	49577										
SEMA3E	0	genome.wustl.edu	37	chr7	82997122	82997122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	accatggttttgctccctgcGagatgctactctgagcagga	11	11	1	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	82997122	82997122	G	A	SNP	SEMA3E	ENST00000307792	human	ensembl	69_37n	-1	known	missense	c.2108	p.S703L	0.044	NULL	pfam_Semaphorin/CD100_Ag,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3E	HGNC	ENSG00000170381	73	0	0	75	11	12.79	-	-	-	A	82997122	G	A	82997122	3	1	562	1	0	0	0	0	1	0	0	0	14116	1059	37	1	223	1	SEMA3E	7	82997122	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09	80009734	82997122	76141541	8	49578										
ST18	0	genome.wustl.edu	37	chr8	53038615	53038615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	cagccctgtgctcttaccccCagttgctttgagcttgatgg	10	13	1	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	8	53038615	53038615	C	T	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2752	p.G918R	0.993	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	92	0	0	172	36	17.31	-	-	-	T	53038615	C	T	53038615	3	4	562	1	0	0	0	0	1	0	0	0	15303	594	21	4	407	4	ST18	8	53038615	Missense_Mutation	SNP	C	TCGA-BH-A0RX-01A-21D-A099-09		53038615	93325407	9	49579										
MUC6	0	genome.wustl.edu	37	chr11	1019367	1019368	+	Frame_Shift_Del	DEL	GC	GC	-													0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	tggacgtcgtggctgggctgGcggtcgacgccgtggccctg							TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	1019367	1019368	GC	-	DEL	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_del	c.3938_3937	p.A1313fs	0.002:0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	293	0	0	277	35	11.11	-	-	-	-	1019368	GC	-	1019367	7	5	562	1	0	1	0	1	0	0	0	0	10052	1203	42	0	3397	0	MUC6	11	1019367	Frame_Shift_Del	DEL	GC	TCGA-BH-A0RX-01A-21D-A099-09		1019367	133987149	10	49580										
CHRM4	0	genome.wustl.edu	37	chr11	46406905	46406905	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	gctagcagaatggcaaagatCgttcgtgtcactttgcgctc	11	10	1	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	46406905	46406905	C	T	SNP	CHRM4	ENST00000433765	human	ensembl	69_37n	-1	known	silent	c.1203	p.T401	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Musac_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	93	0	0	92	19	17.12	-	-	-	T	46406905	C	T	46406905	2	4	562	1	0	0	0	0	0	0	0	1	3408	871	31	1		1	CHRM4	11	46406905	Silent	SNP	C	TCGA-BH-A0RX-01A-21D-A099-09	45387538	46406905	88599611	11	49581										
HELB	0	genome.wustl.edu	37	chr12	66717817	66717817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	gataaaatttgttgtaccagGaatgcatacctctcagactt	7	8	1	1			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	12	66717817	66717817	G	T	SNP	HELB	ENST00000247815	human	ensembl	69_37n	1	known	missense	c.2352	p.R784S	0.991	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	90	0	0	154	26	14.36	-	-	-	T	66717817	G	T	66717817	3	4	562	1	0	0	0	0	1	0	0	0	7096	1165	41	2	2390	2	HELB	12	66717817	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		66717817	67134078	12	49582										
TFDP1	0	genome.wustl.edu	37	chr13	114292199	114292199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	ttccacgtctaacggcacaaGgttctctgccaggtgacagt	10	12	2	1			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	13	114292199	114292199	G	T	SNP	TFDP1	ENST00000375370	human	ensembl	69_37n	1	known	missense	c.1073	p.R358M	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP1	HGNC	ENSG00000198176	102	0	0	89	11	11	-	-	-	T	114292199	G	T	114292199	3	4	562	1	0	0	0	0	1	0	0	0	15892	1000	35	4	1111	4	TFDP1	13	114292199	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		114292199	877679	13	49583										
PCNX	0	genome.wustl.edu	37	chr14	71543011	71543011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	ctgatcgcaattatgtcgatGtggacccgacctttaatcca	8	11	0	1			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	14	71543011	71543011	G	A	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.5212	p.V1738M	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	88	0	0	88	17	16.19	-	-	-	A	71543011	G	A	71543011	3	1	562	1	0	0	0	0	1	0	0	0	11664	1377	48	4	5322	4	PCNX	14	71543011	Missense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		71543011	35806529	14	49584										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	35	0	0	45	8	15.09	-	-	-	A	7574003	G	A	7574003	4	1	562	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09		7574003	73621207	15	49585										
C17orf102	0	genome.wustl.edu	37	chr17	32906191	32906191	+	Missense_Mutation	SNP	C	C	T													0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	atcagtgactgcggtggcgtCtaccctggagaaacgcagct							TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	32906191	32906191	C	T	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	missense	c.109	p.D37N	0.231	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	29	0	0	19	6	24	-	-	-	T	32906191	C	T	32906191	3	4	562	1	0	0	0	0	1	0	0	0	1862	913	32	2	402	2	C17orf102	17	32906191	Missense_Mutation	SNP	C	TCGA-BH-A0RX-01A-21D-A099-09	25332188	32906191	48289019	16	49586	418	2								
C17orf102	0	genome.wustl.edu	37	chr17	32906192	32906192	+	Silent	SNP	T	T	A													0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	tcagtgactgcggtggcgtcTaccctggagaaacgcagctg							TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	32906192	32906192	T	A	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	silent	c.108	p.V36	0.001	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	28	0	0	19	6	23.08	-	-	-	A	32906192	T	A	32906192	2	1	562	1	0	0	0	0	0	0	0	1	1862	1509	53	5		5	C17orf102	17	32906192	Silent	SNP	T	TCGA-BH-A0RX-01A-21D-A099-09	1	32906192	48289018	17	49587	418	2								
CYGB	0	genome.wustl.edu	37	chr17	74527737	74527737	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	1	0.994628167771038	0.640909090909091	0	0.705	1	1	0	tccatgtgcttgaactggctGaagtactgcttggccgaggg	14	9	0	2			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	74527737	74527737	G	A	SNP	CYGB	ENST00000293230	human	ensembl	69_37n	-1	known	silent	c.180	p.F60	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544	68	0	0	115	23	16.67	-	-	-	A	74527737	G	A	74527737	2	1	562	1	0	0	0	0	0	0	0	1	4170	1281	45	2		2	CYGB	17	74527737	Silent	SNP	G	TCGA-BH-A0RX-01A-21D-A099-09	41621545	74527737	6667473	18	49588										
SCN2A	0	genome.wustl.edu	37	chr2	166245338	166245338	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ttcctggtcatgttcatctaCgccatctttgggatgtccaa	8	11	4	0			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	2	166245338	166245338	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	silent	c.5022	p.Y1674	0.954	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	854	0	0	144	121	45.66	-	-	-	T	166245338	C	T	166245338	2	4	563	1	0	0	0	0	0	0	0	1	14004	547	19	1		1	SCN2A	2	166245338	Silent	SNP	C	TCGA-BH-A0W3-01A-11D-A10G-09		166245338	76954035	1	49589										
METTL5	0	genome.wustl.edu	37	chr2	170669020	170669020	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	caggtcatatcgaagttctgTaaaacaaaagccacctaagg	8	9	2	0			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	2	170669020	170669020	T	G	SNP	METTL5	ENST00000442181	human	ensembl	69_37n	-1	novel	missense	c.288	p.L96F	0.726	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	METTL5	HGNC	ENSG00000138382	110	0	0	118	92	43.6	-	-	-	G	170669020	T	G	170669020	3	3	563	1	0	0	0	0	1	0	0	0	9574	1653	57	5		5	METTL5	2	170669020	Missense_Mutation	SNP	T	TCGA-BH-A0W3-01A-11D-A10G-09	4423682	170669020	72530353	2	49590										
CP	0	genome.wustl.edu	37	chr3	148930395	148930395	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ttttctatagttgtcctaaaGgtttcatctgtgtactgaag	8	6	3	1			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	148930395	148930395	G	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	silent	c.237	p.T79	0.298	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	131	0	0	138	117	45.7	-	-	-	A	148930395	G	A	148930395	2	1	563	1	0	0	0	0	0	0	0	1	3817	987	35	4		4	CP	3	148930395	Silent	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09		148930395	49092035	3	49591										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	69	76	52.41	-	-	-	A	178936082	G	A	178936082	3	1	563	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09	30005687	178936082	19086348	4	49592										
FSTL4	0	genome.wustl.edu	37	chr5	132585181	132585181	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	gtggcctcaggtctccatggAcggcgcaggtcagcactgtg	15	12	3	0			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	5	132585181	132585181	A	T	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.815	p.V272D	0.994	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	99	0	0	10	7	41.18	-	-	-	T	132585181	A	T	132585181	3	4	563	1	0	0	0	0	1	0	0	0	6128	275	10	5	1753	5	FSTL4	5	132585181	Missense_Mutation	SNP	A	TCGA-BH-A0W3-01A-11D-A10G-09		132585181	48330079	5	49593										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99631717	99631717	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	caaggccttcacccgcagctCcaccctcactctgcatcaca	5	20	4	0			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	99631717	99631717	C	G	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	missense	c.1589	p.S530C	0.227	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	58	0	0	34	19	35.85	-	-	-	G	99631717	C	G	99631717	3	3	563	1	0	0	0	0	1	0	0	0	17782	855	30	2	1607	2	ZKSCAN1	7	99631717	Missense_Mutation	SNP	C	TCGA-BH-A0W3-01A-11D-A10G-09		99631717	59506946	6	49594										
WEE2	0	genome.wustl.edu	37	chr7	141427142	141427142	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	gccgaacagagaccttctgcAgcagctctggccagaaatac	10	13	2	2			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	141427142	141427142	A	T	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	1	known	silent	c.1431	p.A477	0.315	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	63	0	0	34	22	39.29	-	-	-	T	141427142	A	T	141427142	2	4	563	1	0	0	0	0	0	0	0	1	17442	175	7	5		5	WEE2	7	141427142	Silent	SNP	A	TCGA-BH-A0W3-01A-11D-A10G-09	41795425	141427142	17711521	7	49595										
MMRN2	0	genome.wustl.edu	37	chr10	88703812	88703812	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	tggttaaagctcctccagatGgggctgaaatgcacttgtag	12	8	0	2			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	10	88703812	88703812	G	A	SNP	MMRN2	ENST00000372027	human	ensembl	69_37n	-1	known	silent	c.729	p.P243	1.000	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269	34	0	0	14	7	33.33	-	-	-	A	88703812	G	A	88703812	2	1	563	1	0	0	0	0	0	0	0	1	9743	1335	47	4		4	MMRN2	10	88703812	Silent	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09		88703812	46830935	8	49596										
KCNK4	0	genome.wustl.edu	37	chr11	64064601	64064601	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ctctgcccaggctatggcaaTgtggccctgcgcacagatgc	12	14	1	1			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	64064601	64064601	T	A	SNP	KCNK4	ENST00000394525	human	ensembl	69_37n	1	known	missense	c.324	p.N108K	0.981	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450	31	0	0	7	10	58.82	-	-	-	A	64064601	T	A	64064601	3	1	563	1	0	0	0	0	1	0	0	0	8122	1461	51	5	334	5	KCNK4	11	64064601	Missense_Mutation	SNP	T	TCGA-BH-A0W3-01A-11D-A10G-09		64064601	70941915	9	49597										
PDE2A	0	genome.wustl.edu	37	chr11	72290428	72290428	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	tccagcatgcgctgatagtcCtgaggcgagggcaggggtgt	17	9	0	2			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	72290428	72290428	C	G	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	splice_site	c.2257-1	e27-1	1.000	-	-	-	no_errors	PDE2A	HGNC	ENSG00000186642	42	0	0	8	5	38.46	-	-	-	G	72290428	C	G	72290428	5	3	563	1	0	0	0	0	0	0	1	0	11709	695	24	4	589	4	PDE2A	11	72290428	Splice_Site	SNP	C	TCGA-BH-A0W3-01A-11D-A10G-09	8225827	72290428	62716088	10	49598										
SIK3	0	genome.wustl.edu	37	chr11	116732018	116732018	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	tggatcatggcactgctcatGgggggaggactattactggg							TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	116732018	116732018	G	-	DEL	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	frame_shift_del	c.2253	p.M752fs	0.024	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	67	0	0	8	26	76.47	-	-	-	-	116732018	G	-	116732018	7	5	563	1	0	1	0	1	0	0	0	0	14408	1335	47	0	1736	0	SIK3	11	116732018	Frame_Shift_Del	DEL	G	TCGA-BH-A0W3-01A-11D-A10G-09	44441590	116732018	18274498	11	49599										
ELK3	0	genome.wustl.edu	37	chr12	96653588	96653588	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	cagccttagtccagttgctcCgctgagtcctgccaggctgc	11	15	0	1			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	96653588	96653588	C	A	SNP	ELK3	ENST00000228741	human	ensembl	69_37n	1	known	missense	c.1082	p.P361Q	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELK3	HGNC	ENSG00000111145	148	0	0	31	32	50.79	-	-	-	A	96653588	C	A	96653588	3	1	563	1	0	0	0	0	1	0	0	0	5097	652	23	3	1092	3	ELK3	12	96653588	Missense_Mutation	SNP	C	TCGA-BH-A0W3-01A-11D-A10G-09		96653588	37198307	12	49600										
TMEM120B	0	genome.wustl.edu	37	chr12	122212588	122212588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	gttccagtcctggatgtggcGgggcctcacctttctcctgc	12	14	2	0			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	122212588	122212588	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	missense	c.797	p.R266Q	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	114	0	0	32	38	54.29	-	-	-	A	122212588	G	A	122212588	3	1	563	1	0	0	0	0	1	0	0	0	16129	1116	39	1	835	1	TMEM120B	12	122212588	Missense_Mutation	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09	25559000	122212588	11639307	13	49601										
LRCH1	0	genome.wustl.edu	37	chr13	47279264	47279264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	atcctatgggatcagcagaaGccttagaattacaagattct	8	8	2	3			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	47279264	47279264	G	A	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.1462	p.A488T	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	117	0	0	60	110	64.71	-	-	-	A	47279264	G	A	47279264	3	1	563	1	0	0	0	0	1	0	0	0	8998	971	34	4	1508	4	LRCH1	13	47279264	Missense_Mutation	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09		47279264	67890614	14	49602										
LMO7	0	genome.wustl.edu	37	chr13	76370783	76370783	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ttttttaaggttttgataacAttgtactggctgggaagaaa	10	3	0	2			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	76370783	76370783	A	G	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	1	known	silent	c.516	p.T172	0.317	superfamily_CH-domain,smart_CH-domain	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	120	0	0	58	50	46.3	-	-	-	G	76370783	A	G	76370783	2	3	563	1	0	0	0	0	0	0	0	1	8911	204	8	5		5	LMO7	13	76370783	Silent	SNP	A	TCGA-BH-A0W3-01A-11D-A10G-09	29091519	76370783	38799095	15	49603										
CATSPER2	0	genome.wustl.edu	37	chr15	43939311	43939311	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	gatgatgaagtttttgaagaGaggacctgttgtctcttaag	12	4	1	4			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	15	43939311	43939311	G	C	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	missense	c.325	p.L109V	0.977	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	181	0	0	154	106	40.61	-	-	-	C	43939311	G	C	43939311	3	2	563	1	0	0	0	0	1	0	0	0	2713	942	33	2	1346	2	CATSPER2	15	43939311	Missense_Mutation	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09		43939311	58592081	16	49604										
COQ9	0	genome.wustl.edu	37	chr16	57493549	57493549	+	Frame_Shift_Del	DEL	T	T	-													0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	agctggtgatgatgcaggacTcctctccagactttgaggac							TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	16	57493549	57493549	T	-	DEL	COQ9	ENST00000262507	human	ensembl	69_37n	1	known	frame_shift_del	c.784	p.S262fs	1.000	pfam_COQ9,tigrfam_Ubiq_biosynth_COQ9	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682	179	0	0	15	2	11.76	-	-	-	-	57493549	T	-	57493549	7	5	563	1	0	1	0	1	0	0	0	0	3781	1551	54	0	810	0	COQ9	16	57493549	Frame_Shift_Del	DEL	T	TCGA-BH-A0W3-01A-11D-A10G-09		57493549	32861204	17	49605										
ELAC2	0	genome.wustl.edu	37	chr17	12901771	12901771	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	tgacatttcgaatcttcatcGggatggcagaccctgttcca	9	11	2	2			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	17	12901771	12901771	G	A	SNP	ELAC2	ENST00000584650	human	ensembl	69_37n	-1	novel	nonsense	c.877	p.R293*	0.999	NULL	pfam_Beta-lactamas-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELAC2	HGNC	ENSG00000006744	205	0	0	70	56	44.44	-	-	-	A	12901771	G	A	12901771	4	1	563	1	0	0	0	0	0	1	0	0	5084	1116	39	1	1038	1	ELAC2	17	12901771	Nonsense_Mutation	SNP	G	TCGA-BH-A0W3-01A-11D-A10G-09		12901771	68293439	18	49606										
MYH7B	0	genome.wustl.edu	37	chr20	33568852	33568852	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.871886716160037	1.11598746081505	2.04597701149425	0.767241379310345	1	1	0	ccagaccgagacaaccagtcCatgctgatcacgtgagtgtg	11	12	1	4			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	20	33568852	33568852	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	silent	c.642	p.S214	0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	163	0	0	18	26	59.09	-	-	-	T	33568852	C	T	33568852	2	4	563	1	0	0	0	0	0	0	0	1	10112	581	21	4		4	MYH7B	20	33568852	Silent	SNP	C	TCGA-BH-A0W3-01A-11D-A10G-09		33568852	29456668	19	49607										
CDK11A	0	genome.wustl.edu	37	chr1	1653040	1653040	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tgtacatccgctcacctgtcTtccattgagtcttctcttct	5	14	5	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	1	1653040	1653040	T	A	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	missense	c.222	p.E74D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	168	0	0	237	75	24.04	-	-	-	A	1653040	T	A	1653040	3	1	564	1	0	0	0	0	1	0	0	0	3155	1606	56	5	2192	5	CDK11A	1	1653040	Missense_Mutation	SNP	T	TCGA-BH-A0W4-01A-11D-A10G-09		1653040	247597581	1	49608										
TCEB3	0	genome.wustl.edu	37	chr1	24077576	24077576	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	agagaaagaggtgtcacagaAtgtcaccaacttactcttca	8	9	4	3			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	1	24077576	24077576	A	G	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	missense	c.559	p.M187V	0.001	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	13	0	0	31	9	22.5	-	-	-	G	24077576	A	G	24077576	3	3	564	1	0	0	0	0	1	0	0	0	15776	101	4	5	573	5	TCEB3	1	24077576	Missense_Mutation	SNP	A	TCGA-BH-A0W4-01A-11D-A10G-09	22424536	24077576	225173045	2	49609										
ANO7	0	genome.wustl.edu	37	chr2	242155637	242155637	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ccctgtgagggtctgtttgaCgagtacctggaaatgggtag	15	7	1	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	2	242155637	242155637	C	T	SNP	ANO7	ENST00000274979	human	ensembl	69_37n	1	known	silent	c.2118	p.D706	0.573	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205	33	0	0	49	21	30	-	-	-	T	242155637	C	T	242155637	2	4	564	1	0	0	0	0	0	0	0	1	701	535	19	1		1	ANO7	2	242155637	Silent	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		242155637	1043736	3	49610										
ITPR1	0	genome.wustl.edu	37	chr3	4726865	4726865	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	cgcgcacgccgtggtgctggAgctgctgcagattccctatg	14	13	0	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	3	4726865	4726865	A	G	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.3632	p.E1211G	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	46	0	0	66	26	27.96	-	-	-	G	4726865	A	G	4726865	3	3	564	1	0	0	0	0	1	0	0	0	7974	304	11	5	3787	5	ITPR1	3	4726865	Missense_Mutation	SNP	A	TCGA-BH-A0W4-01A-11D-A10G-09		4726865	193295565	4	49611										
CHCHD6	0	genome.wustl.edu	37	chr3	126445927	126445927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ttctgcttccttagctgtctGaaaacgtggtgaaccgcatg	10	10	2	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	3	126445927	126445927	G	A	SNP	CHCHD6	ENST00000290913	human	ensembl	69_37n	1	known	missense	c.94	p.E32K	1.000	pfam_DUF737	pfam_DUF737	-	no_errors	CHCHD6	HGNC	ENSG00000159685	101	0	0	147	55	27.23	-	-	-	A	126445927	G	A	126445927	3	1	564	1	0	0	0	0	1	0	0	0	3349	1291	45	2	100	2	CHCHD6	3	126445927	Missense_Mutation	SNP	G	TCGA-BH-A0W4-01A-11D-A10G-09	121719062	126445927	71576503	5	49612										
NPY1R	0	genome.wustl.edu	37	chr4	164247028	164247028	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	cttgaagtagcaaataaataTaaaacaaagtggaccaaaat	6	5	0	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	4	164247028	164247028	T	G	SNP	NPY1R	ENST00000296533	human	ensembl	69_37n	-1	known	missense	c.679	p.I227L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	49	0	0	14	12	46.15	-	-	-	G	164247028	T	G	164247028	3	3	564	1	0	0	0	0	1	0	0	0	10681	1406	49	5	483	5	NPY1R	4	164247028	Missense_Mutation	SNP	T	TCGA-BH-A0W4-01A-11D-A10G-09		164247028	26907248	6	49613										
DAB2	0	genome.wustl.edu	37	chr5	39394418	39394418	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	cacttgtttctacttcgttaGacatggcaagaaggcaggca	10	9	1	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	5	39394418	39394418	G	A	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	missense	c.5	p.S2F	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	108	0	0	264	84	24.14	-	-	-	A	39394418	G	A	39394418	3	1	564	1	0	0	0	0	1	0	0	0	4250	942	33	2	2359	2	DAB2	5	39394418	Missense_Mutation	SNP	G	TCGA-BH-A0W4-01A-11D-A10G-09		39394418	141520842	7	49614										
APBB3	0	genome.wustl.edu	37	chr5	139939900	139939900	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ttcccacccatgactcaccaTacaggcagcctgcacagctt	6	17	1	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	5	139939900	139939900	T	C	SNP	APBB3	ENST00000356738	human	ensembl	69_37n	-1	known	missense	c.1237	p.M413V	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB3	HGNC	ENSG00000113108	19	0	0	30	21	41.18	-	-	-	C	139939900	T	C	139939900	3	2	564	1	0	0	0	0	1	0	0	0	763	1406	49	5	246	5	APBB3	5	139939900	Missense_Mutation	SNP	T	TCGA-BH-A0W4-01A-11D-A10G-09	100545482	139939900	40975360	8	49615										
ELMO1	0	genome.wustl.edu	37	chr7	37256293	37256293	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gcttctgagccaaaatattcGccatctcctgtggaagaaaa	8	10	2	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	7	37256293	37256293	G	A	SNP	ELMO1	ENST00000433246	human	ensembl	69_37n	-1	novel	nonsense	c.127	p.R43*	0.998	pfam_DUF3361	pfam_Engulfment_cell_motility_ELMO,pfam_DUF3361	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELMO1	HGNC	ENSG00000155849	65	0	0	115	32	21.62	-	-	-	A	37256293	G	A	37256293	4	1	564	1	0	0	0	0	0	1	0	0	5102	1087	38	1	1443	1	ELMO1	7	37256293	Nonsense_Mutation	SNP	G	TCGA-BH-A0W4-01A-11D-A10G-09		37256293	121882370	9	49616										
MET	0	genome.wustl.edu	37	chr7	116371755	116371755	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	attcatcaggctgtgaagcgCgccgtgatgaatatcgaaca	11	9	2	3			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	7	116371755	116371755	C	G	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.1234	p.R412G	0.601	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	53	0	0	81	26	24.3	-	-	-	G	116371755	C	G	116371755	3	3	564	1	0	0	0	0	1	0	0	0	9556	768	27	3	1240	3	MET	7	116371755	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09	79115462	116371755	42766908	10	49617										
OR2A7	0	genome.wustl.edu	37	chr7	143956461	143956461	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gcaaaggagatgggcttggcTggatgcaggaggttcaccag	17	7	1	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	7	143956461	143956461	T	C	SNP	OR2A7	ENST00000493325	human	ensembl	69_37n	-1	known	silent	c.261	p.P87	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896	13	0	0	12	8	40	-	-	-	C	143956461	T	C	143956461	2	2	564	1	0	0	0	0	0	0	0	1	11055	1567	55	5		5	OR2A7	7	143956461	Silent	SNP	T	TCGA-BH-A0W4-01A-11D-A10G-09	27584706	143956461	15182202	11	49618										
PRKAG2	0	genome.wustl.edu	37	chr7	151573642	151573642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ctggctggcatttttcttgcCgccgctcccgccggggctgg	14	15	1	0			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	7	151573642	151573642	C	T	SNP	PRKAG2	ENST00000287878	human	ensembl	69_37n	-1	known	missense	c.64	p.G22S	0.997	NULL	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_errors	PRKAG2	HGNC	ENSG00000106617	15	0	0	57	22	27.85	-	-	-	T	151573642	C	T	151573642	3	4	564	1	0	0	0	0	1	0	0	0	12582	652	23	1	1709	1	PRKAG2	7	151573642	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09	7617181	151573642	7565021	12	49619										
PPYR1	0	genome.wustl.edu	37	chr10	47087301	47087301	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tgcctgtgtcctctccctgcCcttcctggccaacagcatcc	7	19	1	0			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	10	47087301	47087301	C	G	SNP	PPYR1	ENST00000374312	human	ensembl	69_37n	1	known	missense	c.518	p.P173R	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_NPY4_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PPYR1	HGNC	ENSG00000204174	50	0	0	315	38	10.76	-	-	-	G	47087301	C	G	47087301	3	3	564	1	0	0	0	0	1	0	0	0	12493	623	22	4	520	4	PPYR1	10	47087301	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		47087301	88447446	13	49620										
PCDH15	0	genome.wustl.edu	37	chr10	55626527	55626527	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gataagccctgtatatgtttCcactacaaatccttcttttc	4	11	1	0			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	10	55626527	55626527	C	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	nonsense	c.3592	p.E1198*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	225	0	0	154	50	24.51	-	-	-	A	55626527	C	A	55626527	4	1	564	1	0	0	0	0	0	1	0	0	11584	864	30	2	3922	2	PCDH15	10	55626527	Nonsense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09	8539226	55626527	79908220	14	49621										
ZRANB1	0	genome.wustl.edu	37	chr10	126655277	126655277	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gaatcgtccttctgcctttgAtgttggctatactcttgtac	8	10	2	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	10	126655277	126655277	A	T	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.929	p.D310V	1.000	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	133	0	0	390	118	23.23	-	-	-	T	126655277	A	T	126655277	3	4	564	1	0	0	0	0	1	0	0	0	18315	333	12	5	935	5	ZRANB1	10	126655277	Missense_Mutation	SNP	A	TCGA-BH-A0W4-01A-11D-A10G-09	71028750	126655277	8879470	15	49622										
C11orf40	0	genome.wustl.edu	37	chr11	4594539	4594539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tgaagccagacacttacagtAccctaaagcaaggtcttttg	8	10	1	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	11	4594539	4594539	A	G	SNP	C11orf40	ENST00000307616	human	ensembl	69_37n	-1	known	missense	c.305	p.V102A	0.001	NULL	NULL	-	no_errors	C11orf40	HGNC	ENSG00000171987	114	0	0	260	80	23.53	-	-	-	G	4594539	A	G	4594539	3	3	564	1	0	0	0	0	1	0	0	0	1650	391	14	5	359	5	C11orf40	11	4594539	Missense_Mutation	SNP	A	TCGA-BH-A0W4-01A-11D-A10G-09		4594539	130411977	16	49623										
C11orf84	0	genome.wustl.edu	37	chr11	63585750	63585750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	acgctgccagaatgccagccGaaatcgtcgttctccttgac	9	14	1	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	11	63585750	63585750	G	A	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	1	known	missense	c.520	p.E174K	0.987	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	15	0	0	58	18	23.68	-	-	-	A	63585750	G	A	63585750	3	1	564	1	0	0	0	0	1	0	0	0	1678	1059	37	1	530	1	C11orf84	11	63585750	Missense_Mutation	SNP	G	TCGA-BH-A0W4-01A-11D-A10G-09	58991211	63585750	71420766	17	49624										
EED	0	genome.wustl.edu	37	chr11	85977150	85977150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tgatcttttgggtgaaaaaaTaatgtcctgtggtatggatc	11	4	1	2			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	11	85977150	85977150	T	C	SNP	EED	ENST00000263360	human	ensembl	69_37n	1	known	missense	c.752	p.I251T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	153	0	0	30	9	23.08	-	-	-	C	85977150	T	C	85977150	3	2	564	1	0	0	0	0	1	0	0	0	4957	1406	49	5	782	5	EED	11	85977150	Missense_Mutation	SNP	T	TCGA-BH-A0W4-01A-11D-A10G-09	22391400	85977150	49029366	18	49625										
CDKN1B	0	genome.wustl.edu	37	chr12	12870900	12870901	+	Frame_Shift_Del	DEL	CG	CG	-													0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tggaccacgaagagttaaccCgggacttggagaagcactgc							TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	12	12870900	12870901	CG	-	DEL	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_del	c.127_128	p.R43fs	0.998:1.000	pfam_CDI	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	17	0	0	61	23	27.38	-	-	-	-	12870901	CG	-	12870900	7	5	564	1	0	1	0	1	0	0	0	0	3188	643	23	0	129	0	CDKN1B	12	12870900	Frame_Shift_Del	DEL	CG	TCGA-BH-A0W4-01A-11D-A10G-09		12870900	120980995	19	49626										
CORO2B	0	genome.wustl.edu	37	chr15	69003905	69003905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	tcatctggaacctggatgtgGgtgagccggtgaagatgatt	15	6	2	4			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	15	69003905	69003905	G	T	SNP	CORO2B	ENST00000566799	human	ensembl	69_37n	1	known	missense	c.508	p.G170C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2B	HGNC	ENSG00000103647	11	0	0	137	46	25.14	-	-	-	T	69003905	G	T	69003905	3	4	564	1	0	0	0	0	1	0	0	0	3787	1232	43	4	526	4	CORO2B	15	69003905	Missense_Mutation	SNP	G	TCGA-BH-A0W4-01A-11D-A10G-09		69003905	33527487	20	49627										
ZNF592	0	genome.wustl.edu	37	chr15	85325994	85325994	+	Frame_Shift_Del	DEL	A	A	-													0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gccttgatgccaaggaggccAtccagacacccagtgaggag							TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	15	85325994	85325994	A	-	DEL	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	frame_shift_del	c.88	p.I30fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	33	0	0	75	24	23.76	-	-	-	-	85325994	A	-	85325994	7	5	564	1	0	1	0	1	0	0	0	0	18118	217	8	0	90	0	ZNF592	15	85325994	Frame_Shift_Del	DEL	A	TCGA-BH-A0W4-01A-11D-A10G-09	16322089	85325994	17205398	21	49628										
CTCF	0	genome.wustl.edu	37	chr16	67645919	67645919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	cacggcgttcaaatttggatCgtcacatgaaaagccacact	8	11	2	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	16	67645919	67645919	C	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.847	p.R283C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	60	0	0	70	44	37.93	-	-	-	T	67645919	C	T	67645919	3	4	564	1	0	0	0	0	1	0	0	0	4032	884	31	1	853	1	CTCF	16	67645919	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		67645919	22708834	22	49629										
EFTUD2	0	genome.wustl.edu	37	chr17	42964087	42964087	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ggtggtcatcgtcatgatctCctacgtcatcgtcgtcgtca	10	12	5	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	17	42964087	42964087	C	A	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.137	p.G46V	0.987	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	47	0	0	364	128	25.91	-	-	-	A	42964087	C	A	42964087	3	1	564	1	0	0	0	0	1	0	0	0	4996	855	30	2	2885	2	EFTUD2	17	42964087	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		42964087	38231123	23	49630										
GNA15	0	genome.wustl.edu	37	chr19	3151786	3151786	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	ctccgcagccgcatgcccacCactggcatcaacgagtactg	9	17	1	0			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	19	3151786	3151786	C	G	SNP	GNA15	ENST00000262958	human	ensembl	69_37n	1	known	silent	c.567	p.T189	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA15	HGNC	ENSG00000060558	11	0	0	87	35	28.69	-	-	-	G	3151786	C	G	3151786	2	3	564	1	0	0	0	0	0	0	0	1	6555	581	21	4		4	GNA15	19	3151786	Silent	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		3151786	55977197	24	49631										
OR7D2	0	genome.wustl.edu	37	chr19	9296535	9296535	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	gatccagaactacagccgttCatatttgggctgttcctgtc	9	11	1	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	19	9296535	9296535	C	T	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	silent	c.78	p.F26	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	45	0	0	111	33	22.76	-	-	-	T	9296535	C	T	9296535	2	4	564	1	0	0	0	0	0	0	0	1	11292	825	29	2		2	OR7D2	19	9296535	Silent	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09	6144749	9296535	49832448	25	49632										
HLCS	0	genome.wustl.edu	37	chr21	38308910	38308910	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	caagacgctgagcttcacctCgctctggtcagccttggaga	11	13	3	3			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	21	38308910	38308910	C	T	SNP	HLCS	ENST00000336648	human	ensembl	69_37n	-1	known	missense	c.835	p.E279K	0.001	NULL	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267	12	0	0	76	23	23.23	-	-	-	T	38308910	C	T	38308910	3	4	564	1	0	0	0	0	1	0	0	0	7264	893	31	1	1377	1	HLCS	21	38308910	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		38308910	9820985	26	49633										
TAF1	0	genome.wustl.edu	37	chrX	70598836	70598836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.642154257900391	1.51314508276534	0	1.96708860759494	0.1	0.5224358974359	0	caagcctggcaggctggcttCcttctagcatgactaggaat	11	11	1	1			TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fdafddde-aff1-42b4-bf94-a95861eacf53	7ec51376-daf4-4268-834b-55766654128e	X	70598836	70598836	C	T	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.1312	p.P438S	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	67	0	0	226	97	30.03	-	-	-	T	70598836	C	T	70598836	3	4	564	1	0	0	0	0	1	0	0	0	15605	855	30	2	1405	2	TAF1	23	70598836	Missense_Mutation	SNP	C	TCGA-BH-A0W4-01A-11D-A10G-09		70598836	84671724	27	49634										
MMACHC	0	genome.wustl.edu	37	chr1	45966053	45966053	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	agaagatcgaggacacgctaTgtccttttggcttcgaggtt	12	8	0	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	1	45966053	45966053	T	C	SNP	MMACHC	ENST00000401061	human	ensembl	69_37n	1	known	missense	c.49	p.C17R	0.998	NULL	NULL	-	no_errors	MMACHC	HGNC	ENSG00000132763	146	0	0	130	20	13.33	-	-	-	C	45966053	T	C	45966053	3	2	565	1	0	0	0	0	1	0	0	0	9712	1464	51	5	51	5	MMACHC	1	45966053	Missense_Mutation	SNP	T	TCGA-BH-A0W5-01A-11D-A10G-09		45966053	203284568	1	49635										
ZP4	0	genome.wustl.edu	37	chr1	238053448	238053448	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	gtgccacagtcggagtcattCtgcagctcgtgcagcagccc	12	14	2	0			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	1	238053448	238053448	C	A	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.204	p.Q68H	0.046	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	85	0	0	84	16	15.84	-	-	-	A	238053448	C	A	238053448	3	1	565	1	0	0	0	0	1	0	0	0	18311	912	32	2	1462	2	ZP4	1	238053448	Missense_Mutation	SNP	C	TCGA-BH-A0W5-01A-11D-A10G-09	192087395	238053448	11197173	2	49636										
SCN9A	0	genome.wustl.edu	37	chr2	167159635	167159635	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	cactctctagggtattcattAtgctttctaatgtttcatta	5	8	4	0			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	2	167159635	167159635	A	G	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.869	p.I290T	0.002	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	272	0	0	215	36	14.34	-	-	-	G	167159635	A	G	167159635	3	3	565	1	0	0	0	0	1	0	0	0	14013	449	16	5	5151	5	SCN9A	2	167159635	Missense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09		167159635	76039738	3	49637										
SLITRK3	0	genome.wustl.edu	37	chr3	164908518	164908518	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	ctatttcctctgagtcctctAttaggggaatcggggtagtc	11	9	2	1			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	3	164908518	164908518	A	G	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.101	p.I34T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	202	0	0	172	37	17.7	-	-	-	G	164908518	A	G	164908518	3	3	565	1	0	0	0	0	1	0	0	0	14833	449	16	5	2836	5	SLITRK3	3	164908518	Missense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09		164908518	33113912	4	49638										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	127	0	0	90	15	14.29	-	-	-	G	178952085	A	G	178952085	3	3	565	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09	14043567	178952085	19070345	5	49639										
MAP3K1	0	genome.wustl.edu	37	chr5	56177500	56177500	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	ggatctacttgagttctgcaAgaatggttactacagtaccc	9	9	2	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	5	56177500	56177500	A	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.2473	p.R825*	0.995	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	140	0	0	101	36	26.28	-	-	-	T	56177500	A	T	56177500	4	4	565	1	0	0	0	0	0	1	0	0	9314	64	3	5	2527	5	MAP3K1	5	56177500	Nonsense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09		56177500	124737760	6	49640										
MAP3K1	0	genome.wustl.edu	37	chr5	56178253	56178253	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	atacaagtaaacagggagatCcctcaaaaaatagcatgaca							TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	5	56178253	56178253	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3226	p.S1077fs	0.211	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	85	0	0	88	12	12	-	-	-	-	56178253	C	-	56178253	7	5	565	1	0	1	0	1	0	0	0	0	9314	855	30	0	3280	0	MAP3K1	5	56178253	Frame_Shift_Del	DEL	C	TCGA-BH-A0W5-01A-11D-A10G-09	753	56178253	124737007	7	49641										
PPARGC1B	0	genome.wustl.edu	37	chr5	149216402	149216402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	tgacactgtctttgaagacaGcagcagcagcagcggcgaga	13	10	1	4			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	5	149216402	149216402	G	A	SNP	PPARGC1B	ENST00000309241	human	ensembl	69_37n	1	known	missense	c.2384	p.S795N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	19	0	0	15	6	28.57	-	-	-	A	149216402	G	A	149216402	3	1	565	1	0	0	0	0	1	0	0	0	12374	971	34	4	2421	4	PPARGC1B	5	149216402	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09	93038149	149216402	31698858	8	49642										
NKAPL	0	genome.wustl.edu	37	chr6	28227597	28227597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	tccctcagctagattctgacGaacataccccagttgaggat	8	12	2	3			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	6	28227597	28227597	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	69_37n	1	known	missense	c.448	p.E150K	1.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134	29	0	0	22	8	26.67	-	-	-	A	28227597	G	A	28227597	3	1	565	1	0	0	0	0	1	0	0	0	10512	1059	37	1	450	1	NKAPL	6	28227597	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		28227597	142887470	9	49643										
RPL10A	0	genome.wustl.edu	37	chr6	35436736	35436736	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	tctcgaaggttcctggagacGgtggagttgcagatcagctt	14	8	2	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	6	35436736	35436736	G	A	SNP	RPL10A	ENST00000322203	human	ensembl	69_37n	1	known	silent	c.93	p.T31	0.961	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF,pirsf_Ribosomal_L1	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755	39	0	0	25	4	13.79	-	-	-	A	35436736	G	A	35436736	2	1	565	1	0	0	0	0	0	0	0	1	13641	1103	39	1		1	RPL10A	6	35436736	Silent	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09	7209139	35436736	135678331	10	49644										
MUC17	0	genome.wustl.edu	37	chr7	100677967	100677967	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	acaactgctgacggtaccagCatgccaacctcaacttatag	7	13	1	1			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	7	100677967	100677967	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.3270	p.S1090R	0.019	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	307	0	0	175	26	12.94	-	-	-	G	100677967	C	G	100677967	3	3	565	1	0	0	0	0	1	0	0	0	10046	709	25	4	3280	4	MUC17	7	100677967	Missense_Mutation	SNP	C	TCGA-BH-A0W5-01A-11D-A10G-09		100677967	58460696	11	49645										
SSNA1	0	genome.wustl.edu	37	chr9	140083619	140083619	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	atgaggtgaggcagctgacaGagaagctggcccgcgtcaac	15	10	1	4			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	9	140083619	140083619	G	A	SNP	SSNA1	ENST00000322310	human	ensembl	69_37n	1	known	missense	c.154	p.E52K	0.998	NULL	NULL	-	no_errors	SSNA1	HGNC	ENSG00000176101	18	0	0	5	4	44.44	-	-	-	A	140083619	G	A	140083619	3	1	565	1	0	0	0	0	1	0	0	0	15278	943	33	2	160	2	SSNA1	9	140083619	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		140083619	1129812	12	49646										
PTPN5	0	genome.wustl.edu	37	chr11	18764029	18764029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	tggggtgggtggctctggggGtgtcctcaggaggtgccaca	20	8	2	0			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	11	18764029	18764029	G	A	SNP	PTPN5	ENST00000358540	human	ensembl	69_37n	-1	known	missense	c.505	p.P169S	0.267	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	31	0	0	26	10	27.03	-	-	-	A	18764029	G	A	18764029	3	1	565	1	0	0	0	0	1	0	0	0	12874	1261	44	4	1228	4	PTPN5	11	18764029	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		18764029	116242487	13	49647										
APLNR	0	genome.wustl.edu	37	chr11	57003835	57003835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	agtaacaggtcagcatgatgGtgaagggcaccacaaagccc	12	10	1	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	11	57003835	57003835	G	A	SNP	APLNR	ENST00000257254	human	ensembl	69_37n	-1	known	missense	c.644	p.T215I	0.106	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_APJ_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	APLNR	HGNC	ENSG00000134817	71	0	0	30	6	16.67	-	-	-	A	57003835	G	A	57003835	3	1	565	1	0	0	0	0	1	0	0	0	779	1261	44	4	502	4	APLNR	11	57003835	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09	38239806	57003835	78002681	14	49648										
ANO4	0	genome.wustl.edu	37	chr12	101505394	101505394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	ttctctctgttatcacaaatGcatttgtcatagcgataaca	5	9	4	0			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	12	101505394	101505394	G	A	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.2356	p.A786T	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	213	0	0	148	27	15.43	-	-	-	A	101505394	G	A	101505394	3	1	565	1	0	0	0	0	1	0	0	0	698	1319	46	4	2337	4	ANO4	12	101505394	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		101505394	32346501	15	49649										
HNF1A	0	genome.wustl.edu	37	chr12	121431482	121431482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	gaaccctagcaaggaggagcGagagacgctagtggaggagt	17	7	0	1			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	12	121431482	121431482	G	A	SNP	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	missense	c.686	p.R229Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	162	0	0	99	15	13.16	-	-	-	A	121431482	G	A	121431482	3	1	565	1	0	0	0	0	1	0	0	0	7302	1058	37	1	696	1	HNF1A	12	121431482	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09	19926088	121431482	12420413	16	49650										
TRIP11	0	genome.wustl.edu	37	chr14	92505990	92505990	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	cccgacttgacccagagactGgcccaatccggagccgaggc	12	16	0	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	14	92505990	92505990	G	C	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.40	p.Q14E	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	55	0	0	38	6	13.64	-	-	-	C	92505990	G	C	92505990	3	2	565	1	0	0	0	0	1	0	0	0	16651	1357	47	4	5983	4	TRIP11	14	92505990	Missense_Mutation	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		92505990	14843550	17	49651										
LARP6	0	genome.wustl.edu	37	chr15	71125333	71125333	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	atcttgctggggaggttctcGttggggaacagtgggacggg	19	6	2	0			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	15	71125333	71125333	G	A	SNP	LARP6	ENST00000299213	human	ensembl	69_37n	-1	known	silent	c.534	p.N178	0.179	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	-	no_errors	LARP6	HGNC	ENSG00000166173	50	0	0	44	7	13.73	-	-	-	A	71125333	G	A	71125333	2	1	565	1	0	0	0	0	0	0	0	1	8686	1136	40	1		1	LARP6	15	71125333	Silent	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09		71125333	31406059	18	49652										
KIFC3	0	genome.wustl.edu	37	chr16	57794309	57794311	+	In_Frame_Del	DEL	TTC	TTC	-													0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	aatagagcgtctcgctagtgTtcttctccacgggggacacc							TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	16	57794309	57794311	TTC	-	DEL	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	in_frame_del	c.2252_2250	p.K750in_frame_del	1.000:1.000:1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	50	0	0	34	6	15	-	-	-	-	57794311	TTC	-	57794309	7	5	565	1	0	1	0	1	0	0	0	0	8366	1725	60	0	270	0	KIFC3	16	57794309	In_Frame_Del	DEL	TTC	TCGA-BH-A0W5-01A-11D-A10G-09		57794309	32560444	19	49653										
CTCF	0	genome.wustl.edu	37	chr16	67645923	67645923	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	gcgttcaaatttggatcgtcAcatgaaaagccacactgatg	9	9	2	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	16	67645923	67645923	A	C	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.851	p.H284P	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	80	0	0	69	21	23.33	-	-	-	C	67645923	A	C	67645923	3	2	565	1	0	0	0	0	1	0	0	0	4032	159	6	5	857	5	CTCF	16	67645923	Missense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09	9851614	67645923	22708830	20	49654										
CHAF1A	0	genome.wustl.edu	37	chr19	4429539	4429539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	tgagaaccaccggcctgcctActggggtacctggaataaga	12	11	0	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	19	4429539	4429539	A	G	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	missense	c.1709	p.Y570C	1.000	pfam_CAF1A	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	95	0	0	83	13	13.4	-	-	-	G	4429539	A	G	4429539	3	3	565	1	0	0	0	0	1	0	0	0	3340	391	14	5	1743	5	CHAF1A	19	4429539	Missense_Mutation	SNP	A	TCGA-BH-A0W5-01A-11D-A10G-09		4429539	54699444	21	49655										
MAGEB4	0	genome.wustl.edu	37	chrX	30261121	30261121	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	gaaagtcctggagtttttggCcaaggtgaatgacaccaccc	11	10	0	2			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	X	30261121	30261121	C	A	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.869	p.A290D	0.001	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	140	0	0	103	15	12.71	-	-	-	A	30261121	C	A	30261121	3	1	565	1	0	0	0	0	1	0	0	0	9249	739	26	4	871	4	MAGEB4	23	30261121	Missense_Mutation	SNP	C	TCGA-BH-A0W5-01A-11D-A10G-09		30261121	125009439	22	49656										
ELF4	0	genome.wustl.edu	37	chrX	129206310	129206310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.999387256799277	0.591145833333333	0	0.709375	1	1	0	cccgccctgttcagggcatcGggctcagaggcaggaaacag	14	13	2	1			TCGA-BH-A0W5-01A-11D-A10G-09	TCGA-BH-A0W5-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	aca1d737-c24c-49fd-86c0-ab2b29cd28de	0907d948-5ae6-478a-823a-e87b1b52ffbb	X	129206310	129206310	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	silent	c.423	p.P141	0.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	243	0	0	136	26	16.05	-	-	-	A	129206310	G	A	129206310	2	1	565	1	0	0	0	0	0	0	0	1	5093	1103	39	1		1	ELF4	23	129206310	Silent	SNP	G	TCGA-BH-A0W5-01A-11D-A10G-09	98945189	129206310	26064250	23	49657										
ICMT	0	genome.wustl.edu	37	chr1	6292039	6292039	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtacactccactggtcaccaGagtatgtgtatctgattttt	8	9	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	6292039	6292039	G	C	SNP	ICMT	ENST00000343813	human	ensembl	69_37n	-1	known	missense	c.595	p.L199V	0.997	pfam_ICMT_MeTrfase	pfam_ICMT_MeTrfase	-	no_errors	ICMT	HGNC	ENSG00000116237	95	0	0	186	43	18.78	-	-	-	C	6292039	G	C	6292039	3	2	566	1	0	0	0	0	1	0	0	0	7539	933	33	2	267	2	ICMT	1	6292039	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		6292039	242958582	1	49658										
VPS13D	0	genome.wustl.edu	37	chr1	12374365	12374365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gcaccacccaagggtccattCagattgaactacatttcagg	8	12	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	12374365	12374365	C	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.7129	p.Q2377E	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	164	0	0	273	59	17.77	-	-	-	G	12374365	C	G	12374365	3	3	566	1	0	0	0	0	1	0	0	0	17289	827	29	2	7243	2	VPS13D	1	12374365	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	6082326	12374365	236876256	2	49659										
LRRC41	0	genome.wustl.edu	37	chr1	46763262	46763262	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctggaaggccttgtcttcatCagttcatcccagagtcggcg	11	12	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	46763262	46763262	C	G	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	silent	c.330	p.L110	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	93	0	0	155	50	24.39	-	-	-	G	46763262	C	G	46763262	2	3	566	1	0	0	0	0	0	0	0	1	9065	813	29	2		2	LRRC41	1	46763262	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	34388897	46763262	202487359	3	49660										
SPATA6	0	genome.wustl.edu	37	chr1	48865165	48865165	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gagatggagagtgtgattttGaagaaattgtaggctgttcg	15	2	0	5			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	48865165	48865165	G	A	SNP	SPATA6	ENST00000371847	human	ensembl	69_37n	-1	known	missense	c.638	p.S213L	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122	387	0	0	314	78	19.8	-	-	-	A	48865165	G	A	48865165	3	1	566	1	0	0	0	0	1	0	0	0	15104	1294	45	2	856	2	SPATA6	1	48865165	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	2101903	48865165	200385456	4	49661										
ALG6	0	genome.wustl.edu	37	chr1	63862213	63862213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aaccgcctatgtttggtgatTatgaagctcagagacactgg	11	8	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	63862213	63862213	T	G	SNP	ALG6	ENST00000263440	human	ensembl	69_37n	1	known	missense	c.112	p.Y38D	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035	294	0	0	312	79	20.15	-	-	-	G	63862213	T	G	63862213	3	3	566	1	0	0	0	0	1	0	0	0	522	1754	61	5	118	5	ALG6	1	63862213	Missense_Mutation	SNP	T	TCGA-BH-A0W7-01A-11D-A10Y-09	14997048	63862213	185388408	5	49662										
SASS6	0	genome.wustl.edu	37	chr1	100598368	100598368	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tggtggaacagcacttggctCatgttggctcgctgcctcgg	14	11	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	100598368	100598368	C	G	SNP	SASS6	ENST00000287482	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876	50	0	0	128	26	16.88	-	-	-	G	100598368	C	G	100598368	3	3	566	1	0	0	0	0	1	0	0	0	13937	826	29	2	2038	2	SASS6	1	100598368	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	36736155	100598368	148652253	6	49663										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858776	149858776	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cgcatcatccctcgtcacctCcagctggccatccgcaacga	7	19	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	149858776	149858776	C	G	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	silent	c.252	p.L84	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	48	0	0	184	39	17.41	-	-	-	G	149858776	C	G	149858776	2	3	566	1	0	0	0	0	0	0	0	1	7229	842	30	2		2	HIST2H2AC	1	149858776	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	49260408	149858776	99391845	7	49664										
RPTN	0	genome.wustl.edu	37	chr1	152130351	152130351	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atcacactgagtatgctattCaggagttgagccattttgac	9	8	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	152130351	152130351	C	G	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	silent	c.15	p.L5	0.938	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	206	0	0	328	138	29.61	-	-	-	G	152130351	C	G	152130351	2	3	566	1	0	0	0	0	0	0	0	1	13750	813	29	2		2	RPTN	1	152130351	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	2271575	152130351	97120270	8	49665										
GATAD2B	0	genome.wustl.edu	37	chr1	153785831	153785831	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atacactgctcacatagaatCttaccattcttttcttgctt	3	11	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	153785831	153785831	C	G	SNP	GATAD2B	ENST00000368655	human	ensembl	69_37n	-1	known	missense	c.1314	p.K438N	1.000	pfam_Znf_GATA,pfscan_Znf_GATA	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2B	HGNC	ENSG00000143614	183	0	0	260	80	23.53	-	-	-	G	153785831	C	G	153785831	3	3	566	1	0	0	0	0	1	0	0	0	6311	912	32	2	483	2	GATAD2B	1	153785831	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1655480	153785831	95464790	9	49666										
KIFAP3	0	genome.wustl.edu	37	chr1	170008430	170008430	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gcttgatttttcttttttctCtgtaaaaagattttttttta	4	4	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	170008430	170008430	C	G	SNP	KIFAP3	ENST00000361580	human	ensembl	69_37n	-1	known	splice_site	c.320-1	e4-1	1.000	-	-	-	no_errors	KIFAP3	HGNC	ENSG00000075945	247	0	0	161	37	18.5	-	-	-	G	170008430	C	G	170008430	5	3	566	1	0	0	0	0	0	0	1	0	8363	927	32	2	2127	2	KIFAP3	1	170008430	Splice_Site	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	16222599	170008430	79242191	10	49667										
OR2L8	0	genome.wustl.edu	37	chr1	248112192	248112192	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aatcaaacatcaactgatttCatcttattggggctgtttcc	6	9	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	1	248112192	248112192	C	A	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	missense	c.33	p.F11L	0.630	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	334	0	0	279	95	25.33	-	-	-	A	248112192	C	A	248112192	3	1	566	1	0	0	0	0	1	0	0	0	11082	825	29	2	35	2	OR2L8	1	248112192	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	78103762	248112192	1138429	11	49668										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452567	43452567	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctggctgcgatcgccgttctCgctaaacgagcggtcccgga	13	14	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	43452567	43452567	C	G	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.376	p.E126Q	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	13	0	0	62	15	19.48	-	-	-	G	43452567	C	G	43452567	3	3	566	1	0	0	0	0	1	0	0	0	17743	893	31	3	1112	3	ZFP36L2	2	43452567	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		43452567	199746806	12	49669										
DYSF	0	genome.wustl.edu	37	chr2	71913616	71913616	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atgaagctggtgaagcccttCagctgaggactctcctgccc	11	13	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	71913616	71913616	C	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.6330	p.F2110	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	34	0	0	118	32	21.33	-	-	-	T	71913616	C	T	71913616	2	4	566	1	0	0	0	0	0	0	0	1	4894	825	29	2		2	DYSF	2	71913616	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	28461049	71913616	171285757	13	49670										
LRRTM1	0	genome.wustl.edu	37	chr2	80530006	80530006	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cgcccgcaatcccacaggttCccggccagggtgatgcttgt	12	15	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	80530006	80530006	C	G	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	silent	c.939	p.G313	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	8	0	0	30	7	18.92	-	-	-	G	80530006	C	G	80530006	2	3	566	1	0	0	0	0	0	0	0	1	9105	842	30	2		2	LRRTM1	2	80530006	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	8616390	80530006	162669367	14	49671										
NEB	0	genome.wustl.edu	37	chr2	152350316	152350316	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aagttttcttgattgcgtttCactctttccatctcaggagt	7	9	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	152350316	152350316	C	T	SNP	NEB	ENST00000421461	human	ensembl	69_37n	-1	novel	missense	c.1081	p.E361K	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NEB	HGNC	ENSG00000183091	387	0	0	226	48	17.52	-	-	-	T	152350316	C	T	152350316	3	4	566	1	0	0	0	0	1	0	0	0	10374	813	29	2	964	2	NEB	2	152350316	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	71820310	152350316	90849057	15	49672										
TTN	0	genome.wustl.edu	37	chr2	179569097	179569097	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgcaagtctggccttctttCagagtcacatcctgaagatg	10	10	4	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	179569097	179569097	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.26268	p.L8756	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	146	0	0	238	52	17.93	-	-	-	G	179569097	C	G	179569097	2	3	566	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179569097	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	27218781	179569097	63630276	16	49673										
ITGAV	0	genome.wustl.edu	37	chr2	187487072	187487072	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atattcttttttaggcaataGagattatgccaaggatgatc	8	5	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	187487072	187487072	G	C	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	missense	c.323	p.R108T	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	179	0	0	167	36	17.73	-	-	-	C	187487072	G	C	187487072	3	2	566	1	0	0	0	0	1	0	0	0	7942	942	33	2	384	2	ITGAV	2	187487072	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	7917975	187487072	55712301	17	49674										
ANKAR	0	genome.wustl.edu	37	chr2	190611197	190611197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	actaacttcatgggactcttCaaagcaacaaaaaagaccaa	5	10	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	190611197	190611197	C	G	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.4149	p.F1383L	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	79	0	0	42	10	19.23	-	-	-	G	190611197	C	G	190611197	3	3	566	1	0	0	0	0	1	0	0	0	623	825	29	2	4235	2	ANKAR	2	190611197	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	3124125	190611197	52588176	18	49675										
RFTN2	0	genome.wustl.edu	37	chr2	198495903	198495903	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggcccaggaggttgaatcatCatcaaaagcattgaagactg	11	8	3	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	198495903	198495903	C	G	SNP	RFTN2	ENST00000295049	human	ensembl	69_37n	-1	known	missense	c.760	p.D254H	1.000	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	75	0	0	94	27	22.31	-	-	-	G	198495903	C	G	198495903	3	3	566	1	0	0	0	0	1	0	0	0	13342	826	29	2	765	2	RFTN2	2	198495903	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	7884706	198495903	44703470	19	49676										
C2orf47	0	genome.wustl.edu	37	chr2	200824060	200824060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tggaagaacttgtggccaaaGaggtaaagtatattttacat	10	4	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	2	200824060	200824060	G	C	SNP	C2orf47	ENST00000295079	human	ensembl	69_37n	1	known	missense	c.520	p.E174Q	1.000	NULL	NULL	-	no_errors	C2orf47	HGNC	ENSG00000162972	405	0	0	337	76	18.4	-	-	-	C	200824060	G	C	200824060	3	2	566	1	0	0	0	0	1	0	0	0	2189	943	33	2	526	2	C2orf47	2	200824060	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	2328157	200824060	42375313	20	49677										
SETD5	0	genome.wustl.edu	37	chr3	9517426	9517426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ttttagcagccagccacattCtggaaacagcactggcagca	9	12	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	9517426	9517426	C	G	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.3980	p.S1327C	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	53	0	0	84	22	20.75	-	-	-	G	9517426	C	G	9517426	3	3	566	1	0	0	0	0	1	0	0	0	14222	913	32	2	4062	2	SETD5	3	9517426	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		9517426	188505004	21	49678										
TRANK1	0	genome.wustl.edu	37	chr3	36873648	36873648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtagctcttggggaggcataGaatgacattcttccagaggc	13	8	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	36873648	36873648	G	C	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.7294	p.L2432V	0.137	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	57	0	0	115	28	19.58	-	-	-	C	36873648	G	C	36873648	3	2	566	1	0	0	0	0	1	0	0	0	16550	933	33	2	1495	2	TRANK1	3	36873648	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	27356222	36873648	161148782	22	49679										
LARS2	0	genome.wustl.edu	37	chr3	45561759	45561759	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cactgaattctgcaatttctCagctgatgggactcagcaat	8	10	3	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	45561759	45561759	C	T	SNP	LARS2	ENST00000265537	human	ensembl	69_37n	1	known	nonsense	c.2263	p.Q755*	0.982	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Leu-tRNA-synth_Ia_bac/mito	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-synth_Ia_bac/mito,tigrfam_Leu-tRNA-synth_Ia_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376	89	0	0	161	29	15.18	-	-	-	T	45561759	C	T	45561759	4	4	566	1	0	0	0	0	0	1	0	0	8689	827	29	2	2329	2	LARS2	3	45561759	Nonsense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	8688111	45561759	152460671	23	49680										
NBEAL2	0	genome.wustl.edu	37	chr3	47047285	47047285	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggtaggcgatgtggtgctacCcccgtgggccagctctcctg	15	13	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	47047285	47047285	C	A	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.6749	p.P2250H	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	11	0	0	48	17	25.76	-	-	-	A	47047285	C	A	47047285	3	1	566	1	0	0	0	0	1	0	0	0	10261	623	22	4	6915	4	NBEAL2	3	47047285	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1485526	47047285	150975145	24	49681										
RBM6	0	genome.wustl.edu	37	chr3	50091809	50091809	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caccgatcttcctgttcattCtgcaagaacccaagagaagg	8	12	3	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	50091809	50091809	C	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.1674	p.F558L	0.997	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	226	0	0	299	77	20.48	-	-	-	G	50091809	C	G	50091809	3	3	566	1	0	0	0	0	1	0	0	0	13227	912	32	2	1700	2	RBM6	3	50091809	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	3044524	50091809	147930621	25	49682										
VPRBP	0	genome.wustl.edu	37	chr3	51456160	51456160	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gttcaagatgtgtgatggctGagttgtgacagttatagctg	14	4	1	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	51456160	51456160	G	C	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	nonsense	c.2060	p.S687*	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	83	0	0	168	40	19.23	-	-	-	C	51456160	G	C	51456160	4	2	566	1	0	0	0	0	0	1	0	0	17282	1294	45	2	1156	2	VPRBP	3	51456160	Nonsense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1364351	51456160	146566270	26	49683										
DNAH1	0	genome.wustl.edu	37	chr3	52400784	52400784	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gcagctgccatgacgtcactGaaagggcagccatccatcag	11	13	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	52400784	52400784	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.5646	p.L1882	0.996	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	23	0	0	101	22	17.89	-	-	-	A	52400784	G	A	52400784	2	1	566	1	0	0	0	0	0	0	0	1	4633	1277	45	2		2	DNAH1	3	52400784	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	944624	52400784	145621646	27	49684										
DCP1A	0	genome.wustl.edu	37	chr3	53346358	53346358	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ccattggcctggctgggactCtgtttgtcccgagcagcttg	13	12	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	53346358	53346358	C	T	SNP	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	32	0	0	179	20	10.05	-	-	-	T	53346358	C	T	53346358	1	4	566	0	1	0	0	0	0	0	0	0	4329	912	32	2		2	DCP1A	3	53346358	RNA	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	945574	53346358	144676072	28	49685										
PDE12	0	genome.wustl.edu	37	chr3	57543084	57543084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tactgtgccccctacgccctGgagctcgactaccgccagaa	9	17	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	57543084	57543084	G	A	SNP	PDE12	ENST00000311180	human	ensembl	69_37n	1	known	silent	c.978	p.L326	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	18	0	0	73	21	22.34	-	-	-	A	57543084	G	A	57543084	2	1	566	1	0	0	0	0	0	0	0	1	11705	1335	47	4		4	PDE12	3	57543084	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	4196726	57543084	140479346	29	49686										
C3orf14	0	genome.wustl.edu	37	chr3	62307654	62307654	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aaatggagaataaattgggtGatcaacacacagaaaaggca	10	5	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	62307654	62307654	G	A	SNP	C3orf14	ENST00000232519	human	ensembl	69_37n	1	known	missense	c.103	p.D35N	0.000	NULL	NULL	-	no_errors	C3orf14	HGNC	ENSG00000114405	139	0	0	113	25	18.12	-	-	-	A	62307654	G	A	62307654	3	1	566	1	0	0	0	0	1	0	0	0	2228	1290	45	2	109	2	C3orf14	3	62307654	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	4764570	62307654	135714776	30	49687										
MORC1	0	genome.wustl.edu	37	chr3	108818304	108818304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ataaagtcttttccaattctCatggacccactatattaaaa	3	9	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	108818304	108818304	C	G	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.324	p.M108I	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	288	0	0	192	45	18.99	-	-	-	G	108818304	C	G	108818304	3	3	566	1	0	0	0	0	1	0	0	0	9773	826	29	2	2722	2	MORC1	3	108818304	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	46510650	108818304	89204126	31	49688										
C3orf52	0	genome.wustl.edu	37	chr3	111805372	111805372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aggtcttcccttctttggacGaggaggtccccccggccgag	13	14	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	111805372	111805372	G	A	SNP	C3orf52	ENST00000431717	human	ensembl	69_37n	1	known	missense	c.118	p.E40K	0.023	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529	13	0	0	57	14	19.72	-	-	-	A	111805372	G	A	111805372	3	1	566	1	0	0	0	0	1	0	0	0	2252	1059	37	1	120	1	C3orf52	3	111805372	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	2987068	111805372	86217058	32	49689										
SIDT1	0	genome.wustl.edu	37	chr3	113325917	113325917	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtcactggcaaccaggacatCtgttactacaacttcctctg	7	13	3	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	113325917	113325917	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	69_37n	1	known	silent	c.1434	p.I478	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	85	0	0	137	29	17.47	-	-	-	T	113325917	C	T	113325917	2	4	566	1	0	0	0	0	0	0	0	1	14391	903	32	2		2	SIDT1	3	113325917	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1520545	113325917	84696513	33	49690										
A4GNT	0	genome.wustl.edu	37	chr3	137843658	137843658	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atgccaccgtatttccagatGatggccaggcgggatgcatc	12	11	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	137843658	137843658	G	A	SNP	A4GNT	ENST00000236709	human	ensembl	69_37n	-1	known	silent	c.471	p.I157	0.989	pfam_GlycoTrfase_DXD_sugar-bd_CS	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GNT	HGNC	ENSG00000118017	35	0	0	102	27	20.93	-	-	-	A	137843658	G	A	137843658	2	1	566	1	0	0	0	0	0	0	0	1	7	1280	45	2		2	A4GNT	3	137843658	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	24517741	137843658	60178772	34	49691										
HPS3	0	genome.wustl.edu	37	chr3	148858903	148858903	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aagtgaacagtctggattatCtgttacactggagtctacgg	11	7	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	148858903	148858903	C	G	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.812	p.S271C	0.108	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	203	0	0	145	54	27.14	-	-	-	G	148858903	C	G	148858903	3	3	566	1	0	0	0	0	1	0	0	0	7391	913	32	2	822	2	HPS3	3	148858903	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	11015245	148858903	49163527	35	49692										
MED12L	0	genome.wustl.edu	37	chr3	151107914	151107914	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ttttccttcagaaccaatctCttactccaggtatgtgatga	6	10	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	151107914	151107914	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.5494	p.L1832F	0.597	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	62	0	0	98	21	17.65	-	-	-	T	151107914	C	T	151107914	3	4	566	1	0	0	0	0	1	0	0	0	9500	913	32	2	5636	2	MED12L	3	151107914	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	2249011	151107914	46914516	36	49693										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	112	0	0	154	42	21.43	-	-	-	A	178938934	G	A	178938934	3	1	566	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	27831020	178938934	19083496	37	49694										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	86	0	0	139	48	25.67	-	-	-	G	178952085	A	G	178952085	3	3	566	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A0W7-01A-11D-A10Y-09	13151	178952085	19070345	38	49695										
USP13	0	genome.wustl.edu	37	chr3	179474867	179474867	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gatgaaccaattgatagaccGtatgtatctttaaaaatgtt	7	5	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	3	179474867	179474867	G	T	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	splice_site	c.1948+1	e16+1	1.000	-	-	-	no_errors	USP13	HGNC	ENSG00000058056	421	0	0	422	119	22	-	-	-	T	179474867	G	T	179474867	5	4	566	1	0	0	0	0	0	0	1	0	17141	1159	40	3	2011	3	USP13	3	179474867	Splice_Site	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	522782	179474867	18547563	39	49696										
ATP10D	0	genome.wustl.edu	37	chr4	47559850	47559850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagactccctctctttagtcGaatgaaaccagcttcacctg	6	14	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	4	47559850	47559850	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.1994	p.R665L	0.045	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	55	0	0	111	20	15.27	-	-	-	T	47559850	G	T	47559850	3	4	566	1	0	0	0	0	1	0	0	0	1122	1058	37	3	2036	3	ATP10D	4	47559850	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		47559850	143594426	40	49697										
TLR2	0	genome.wustl.edu	37	chr4	154626261	154626261	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aacaatgatgctgccattctCattcttctggagcccattga	7	11	3	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	4	154626261	154626261	C	T	SNP	TLR2	ENST00000260010	human	ensembl	69_37n	1	known	silent	c.2202	p.L734	0.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	134	0	0	151	38	20.11	-	-	-	T	154626261	C	T	154626261	2	4	566	1	0	0	0	0	0	0	0	1	16046	813	29	2		2	TLR2	4	154626261	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	107066411	154626261	36528015	41	49698										
GOLPH3	0	genome.wustl.edu	37	chr5	32126446	32126446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caaatcatactgctcgtccaGaagaggagcaaaagcattct	8	10	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	32126446	32126446	G	C	SNP	GOLPH3	ENST00000265070	human	ensembl	69_37n	-1	known	missense	c.769	p.L257V	0.984	pfam_GPP34	pfam_GPP34	-	no_errors	GOLPH3	HGNC	ENSG00000113384	85	0	0	149	31	17.22	-	-	-	C	32126446	G	C	32126446	3	2	566	1	0	0	0	0	1	0	0	0	6617	933	33	2	131	2	GOLPH3	5	32126446	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		32126446	148788814	42	49699										
SLC30A5	0	genome.wustl.edu	37	chr5	68414426	68414426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagtggctagattgattgatCctccagaattagacactcac	8	10	1	5			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	68414426	68414426	C	T	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.1540	p.P514S	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	385	0	0	359	62	14.73	-	-	-	T	68414426	C	T	68414426	3	4	566	1	0	0	0	0	1	0	0	0	14647	855	30	2	1674	2	SLC30A5	5	68414426	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	36287980	68414426	112500834	43	49700										
XRCC4	0	genome.wustl.edu	37	chr5	82500653	82500653	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gggaaactgcaatctgttctGaaatgactgctgaccgagat	11	8	2	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	82500653	82500653	G	C	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.658	p.E220Q	0.002	pfam_DNA_ds_break_repair_XRCC4	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	223	0	0	245	50	16.89	-	-	-	C	82500653	G	C	82500653	3	2	566	1	0	0	0	0	1	0	0	0	17552	1291	45	2	676	2	XRCC4	5	82500653	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	14086227	82500653	98414607	44	49701										
DMXL1	0	genome.wustl.edu	37	chr5	118454657	118454657	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aatttaacaaataacttcaaGagaaatgcttccagtaaaga	5	6	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	118454657	118454657	G	C	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.891	p.K297N	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	226	0	0	299	42	12.32	-	-	-	C	118454657	G	C	118454657	3	2	566	1	0	0	0	0	1	0	0	0	4630	933	33	2	921	2	DMXL1	5	118454657	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	35954004	118454657	62460603	45	49702										
SLC27A6	0	genome.wustl.edu	37	chr5	128326091	128326091	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagttttggagtgactgcaaGaagtatgatgtgactgtgtt	13	4	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	128326091	128326091	G	A	SNP	SLC27A6	ENST00000262462	human	ensembl	69_37n	1	known	silent	c.903	p.K301	0.845	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396	357	0	0	476	77	13.92	-	-	-	A	128326091	G	A	128326091	2	1	566	1	0	0	0	0	0	0	0	1	14619	933	33	2		2	SLC27A6	5	128326091	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	9871434	128326091	52589169	46	49703										
PCDHA12	0	genome.wustl.edu	37	chr5	140256808	140256808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tagcgagttggtaccgcggtCggtgggtgcgggccacgtgg	20	9	0	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	140256808	140256808	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	missense	c.1751	p.S584L	0.006	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	57	0	0	228	58	20.28	-	-	-	T	140256808	C	T	140256808	3	4	566	1	0	0	0	0	1	0	0	0	11595	893	31	1	1753	1	PCDHA12	5	140256808	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	11930717	140256808	40658452	47	49704										
PCDHAC2	0	genome.wustl.edu	37	chr5	140347416	140347416	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgcaaggtgctggtggacatCgtggacgtgaatgacaatgc	15	7	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	140347416	140347416	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	silent	c.1065	p.I355	0.024	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	11	0	0	71	15	17.44	-	-	-	T	140347416	C	T	140347416	2	4	566	1	0	0	0	0	0	0	0	1	11606	874	31	1		1	PCDHAC2	5	140347416	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	90608	140347416	40567844	48	49705										
PCDHGB2	0	genome.wustl.edu	37	chr5	140739809	140739809	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cccagtccagatccgctattCaattccagaggagctggcca	9	14	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	140739809	140739809	C	G	SNP	PCDHGB2	ENST00000522605	human	ensembl	69_37n	1	known	nonsense	c.107	p.S36*	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910	39	0	0	142	30	17.34	-	-	-	G	140739809	C	G	140739809	4	3	566	1	0	0	0	0	0	1	0	0	11636	838	29	2	109	2	PCDHGB2	5	140739809	Nonsense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	392393	140739809	40175451	49	49706										
NDST1	0	genome.wustl.edu	37	chr5	149921221	149921221	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctcctcatcatcggcccccaGaaaacaggcaggtctctctg	8	16	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	149921221	149921221	G	A	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	silent	c.1839	p.Q613	1.000	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	42	0	0	91	24	20.87	-	-	-	A	149921221	G	A	149921221	2	1	566	1	0	0	0	0	0	0	0	1	10327	933	33	2		2	NDST1	5	149921221	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	9181412	149921221	30994039	50	49707										
CYFIP2	0	genome.wustl.edu	37	chr5	156746911	156746911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agcccctgcggcaggcggtaCggaagaagaagaatgtcctc	14	11	0	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	156746911	156746911	C	T	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.1498	p.R500W	0.988	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	20	0	0	148	34	18.68	-	-	-	T	156746911	C	T	156746911	3	4	566	1	0	0	0	0	1	0	0	0	4169	527	19	1	1548	1	CYFIP2	5	156746911	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	6825690	156746911	24168349	51	49708										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171766111	171766111	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gcaggcctgagcttactcctGaggttgcagatgtcgacttg	13	10	0	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	171766111	171766111	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	silent	c.1998	p.L666	0.994	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	68	0	0	226	45	16.54	-	-	-	A	171766111	G	A	171766111	2	1	566	1	0	0	0	0	0	0	0	1	14346	1277	45	2		2	SH3PXD2B	5	171766111	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	15019200	171766111	9149149	52	49709										
TRIM41	0	genome.wustl.edu	37	chr5	180651352	180651352	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	catgagcaggtccagctgggAcaacatggactatgtgtggg	15	8	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	5	180651352	180651352	A	G	SNP	TRIM41	ENST00000315073	human	ensembl	69_37n	1	known	missense	c.353	p.D118G	1.000	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063	88	0	0	376	134	26.27	-	-	-	G	180651352	A	G	180651352	3	3	566	1	0	0	0	0	1	0	0	0	16612	275	10	5	355	5	TRIM41	5	180651352	Missense_Mutation	SNP	A	TCGA-BH-A0W7-01A-11D-A10Y-09	8885241	180651352	263908	53	49710										
TNFRSF21	0	genome.wustl.edu	37	chr6	47254254	47254254	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agcacctggccggtggcacgGtcaacatggcggtatgtgcc	15	12	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	6	47254254	47254254	G	A	SNP	TNFRSF21	ENST00000296861	human	ensembl	69_37n	-1	known	silent	c.174	p.D58	1.000	smart_TNFR/NGFR_Cys_rich_reg	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_21,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	27	0	0	137	42	23.46	-	-	-	A	47254254	G	A	47254254	2	1	566	1	0	0	0	0	0	0	0	1	16390	1252	44	4		4	TNFRSF21	6	47254254	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		47254254	123860813	54	49711										
QRSL1	0	genome.wustl.edu	37	chr6	107096913	107096913	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcatcagatctgggagcacaGatggtgtatttggaccagtt	12	7	3	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	6	107096913	107096913	G	C	SNP	QRSL1	ENST00000369046	human	ensembl	69_37n	1	known	missense	c.394	p.D132H	1.000	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	-	no_errors	QRSL1	HGNC	ENSG00000130348	141	1	0.7	72	36	33.33	-	-	-	C	107096913	G	C	107096913	3	2	566	1	0	0	0	0	1	0	0	0	12964	942	33	2	412	2	QRSL1	6	107096913	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	59842659	107096913	64018154	55	49712										
TAAR9	0	genome.wustl.edu	37	chr6	132859636	132859636	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgcacacacctacaaactttCtgattgcgtcgctggcctgt	8	13	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	6	132859636	132859636	C	G	SNP	TAAR9	ENST00000434551	human	ensembl	69_37n	1	known	missense	c.208	p.L70V	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAAR9	HGNC	ENSG00000237110	221	0	0	433	107	19.78	-	-	-	G	132859636	C	G	132859636	3	3	566	1	0	0	0	0	1	0	0	0	15586	912	32	2	210	2	TAAR9	6	132859636	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	25762723	132859636	38255431	56	49713										
ARID1B	0	genome.wustl.edu	37	chr6	157511206	157511206	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgtgcacgacccattctcaGatgtgagtgattcatccttc	9	11	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	6	157511206	157511206	G	C	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.3844	p.D1282H	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	57	0	0	122	24	16.44	-	-	-	C	157511206	G	C	157511206	3	2	566	1	0	0	0	0	1	0	0	0	916	942	33	2	3782	2	ARID1B	6	157511206	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	24651570	157511206	13603861	57	49714										
HECW1	0	genome.wustl.edu	37	chr7	43532742	43532742	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	acatttttgaaatgctgcaaGagcgtcagccaagcttagca	9	9	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	43532742	43532742	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.3400	p.E1134K	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	95	0	0	230	57	19.86	-	-	-	A	43532742	G	A	43532742	3	1	566	1	0	0	0	0	1	0	0	0	7093	943	33	2	3466	2	HECW1	7	43532742	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		43532742	115605921	58	49715										
FIGNL1	0	genome.wustl.edu	37	chr7	50513589	50513589	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tagaagttaaggatgaagcaGagatgctaaagaatgttgcc	12	4	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	50513589	50513589	G	T	SNP	FIGNL1	ENST00000356889	human	ensembl	69_37n	-1	known	missense	c.1397	p.S466Y	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436	77	0	0	158	33	17.28	-	-	-	T	50513589	G	T	50513589	3	4	566	1	0	0	0	0	1	0	0	0	5938	942	33	2	631	2	FIGNL1	7	50513589	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	6980847	50513589	108625074	59	49716										
KRIT1	0	genome.wustl.edu	37	chr7	91855841	91855841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aacctggaaaataacttactCtatccgtttctgggtggttt	8	8	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	91855841	91855841	C	G	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.1145	p.R382T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	186	0	0	170	48	22.02	-	-	-	G	91855841	C	G	91855841	3	3	566	1	0	0	0	0	1	0	0	0	8498	927	32	2	1101	2	KRIT1	7	91855841	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	41342252	91855841	67282822	60	49717										
COL1A2	0	genome.wustl.edu	37	chr7	94041910	94041910	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tttcagggcctccctggcatCgacggcaggcctggcccaat	12	15	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	94041910	94041910	C	G	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.1419	p.I473M	0.004	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	25	0	0	44	27	38.03	-	-	-	G	94041910	C	G	94041910	3	3	566	1	0	0	0	0	1	0	0	0	3708	874	31	3	1517	3	COL1A2	7	94041910	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	2186069	94041910	65096753	61	49718										
TRRAP	0	genome.wustl.edu	37	chr7	98602971	98602971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agaggcacttgtttttcacaGgtagggttgagagccacagc	13	8	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	98602971	98602971	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.10711	p.V3571M	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	16	0	0	40	18	31.03	-	-	-	A	98602971	G	A	98602971	3	1	566	1	0	0	0	0	1	0	0	0	16697	1014	35	4	10886	4	TRRAP	7	98602971	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	4561061	98602971	60535692	62	49719										
PILRA	0	genome.wustl.edu	37	chr7	99987590	99987590	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	acaaccaccacaaccggcctCagggtcacacagggcaaacg	9	16	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	99987590	99987590	C	G	SNP	PILRA	ENST00000198536	human	ensembl	69_37n	1	known	silent	c.534	p.L178	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PILRA	HGNC	ENSG00000085514	76	0	0	336	52	13.4	-	-	-	G	99987590	C	G	99987590	2	3	566	1	0	0	0	0	0	0	0	1	11999	813	29	2		2	PILRA	7	99987590	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1384619	99987590	59151073	63	49720										
MUC17	0	genome.wustl.edu	37	chr7	100675920	100675920	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caccatattggtggccagttCtgaggctagcaccacttcaa	9	12	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	100675920	100675920	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.1223	p.S408C	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	256	1	0.39	392	69	14.97	-	-	-	G	100675920	C	G	100675920	3	3	566	1	0	0	0	0	1	0	0	0	10046	913	32	2	1233	2	MUC17	7	100675920	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	688330	100675920	58462743	64	49721										
TRPV6	0	genome.wustl.edu	37	chr7	142571218	142571218	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cacctgggccctccacagctCatcccgctcatgggccactc	8	20	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	142571218	142571218	C	T	SNP	TRPV6	ENST00000359396	human	ensembl	69_37n	-1	known	missense	c.1771	p.E591K	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125	20	0	0	74	30	28.57	-	-	-	T	142571218	C	T	142571218	3	4	566	1	0	0	0	0	1	0	0	0	16696	835	29	2	418	2	TRPV6	7	142571218	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	41895298	142571218	16567445	65	49722										
PAXIP1	0	genome.wustl.edu	37	chr7	154754071	154754071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctcctggtgggaaggccactGggaagtgaagggctcggtgc	18	9	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	7	154754071	154754071	G	A	SNP	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	missense	c.2087	p.P696L	1.000	superfamily_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	223	0	0	586	115	16.38	-	-	-	A	154754071	G	A	154754071	3	1	566	1	0	0	0	0	1	0	0	0	11560	1348	47	4	1170	4	PAXIP1	7	154754071	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	12182853	154754071	4384592	66	49723										
LONRF1	0	genome.wustl.edu	37	chr8	12586696	12586696	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agcatacctattttgtgtatCactgacacacatgccaaact	5	11	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	8	12586696	12586696	C	T	SNP	LONRF1	ENST00000398246	human	ensembl	69_37n	-1	known	missense	c.1834	p.D612N	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359	57	0	0	135	15	10	-	-	-	T	12586696	C	T	12586696	3	4	566	1	0	0	0	0	1	0	0	0	8960	826	29	2	503	2	LONRF1	8	12586696	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		12586696	133777326	67	49724										
CHRNB3	0	genome.wustl.edu	37	chr8	42587035	42587035	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aatgtcgacagaaaagacttCttcgataacggagaatggga	11	6	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	8	42587035	42587035	C	G	SNP	CHRNB3	ENST00000289957	human	ensembl	69_37n	1	known	missense	c.585	p.F195L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432	51	0	0	90	12	11.65	-	-	-	G	42587035	C	G	42587035	3	3	566	1	0	0	0	0	1	0	0	0	3421	912	32	2	603	2	CHRNB3	8	42587035	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	30000339	42587035	103776987	68	49725										
RP1	0	genome.wustl.edu	37	chr8	55538461	55538461	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tctgttgccagcaaaaagaaGaaaaaatctcgacagcaagc	8	9	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	8	55538461	55538461	G	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.2019	p.K673N	0.935	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	35	0	0	31	8	20.51	-	-	-	T	55538461	G	T	55538461	3	4	566	1	0	0	0	0	1	0	0	0	13618	933	33	2	2029	2	RP1	8	55538461	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	12951426	55538461	90825561	69	49726										
VPS13B	0	genome.wustl.edu	37	chr8	100732756	100732756	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagatgacctacggacaggtCtatttcagtatgtacaggat	10	8	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	8	100732756	100732756	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.6916	p.L2306	0.162	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	78	0	0	118	15	11.28	-	-	-	T	100732756	C	T	100732756	2	4	566	1	0	0	0	0	0	0	0	1	17287	912	32	2		2	VPS13B	8	100732756	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	45194295	100732756	45631266	70	49727										
RLN2	0	genome.wustl.edu	37	chr9	5300346	5300346	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tggtaatgctggctgcatctCagacagggttaacttcagct	11	9	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	5300346	5300346	C	T	SNP	RLN2	ENST00000381627	human	ensembl	69_37n	-1	known	missense	c.310	p.E104K	0.012	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN2	HGNC	ENSG00000107014	221	0	0	249	55	18.09	-	-	-	T	5300346	C	T	5300346	3	4	566	1	0	0	0	0	1	0	0	0	13478	835	29	2	251	2	RLN2	9	5300346	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		5300346	135913085	71	49728										
PCSK5	0	genome.wustl.edu	37	chr9	78638713	78638713	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aatatcgaaggagcctggaaGagaggctacacgggaaagaa	14	6	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	78638713	78638713	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.471	p.K157N	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	100	0	0	187	39	17.26	-	-	-	C	78638713	G	C	78638713	3	2	566	1	0	0	0	0	1	0	0	0	11676	933	33	2	485	2	PCSK5	9	78638713	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	73338367	78638713	62574718	72	49729										
ALG2	0	genome.wustl.edu	37	chr9	101980615	101980615	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gactgttggaccattttcttCaattcctgataatgttccac	6	10	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	101980615	101980615	C	A	SNP	ALG2	ENST00000476832	human	ensembl	69_37n	-1	known	missense	c.852	p.L284F	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523	70	0	0	118	23	16.31	-	-	-	A	101980615	C	A	101980615	3	1	566	1	0	0	0	0	1	0	0	0	519	825	29	2	402	2	ALG2	9	101980615	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	23341902	101980615	39232816	73	49730										
SVEP1	0	genome.wustl.edu	37	chr9	113169407	113169407	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cacaggaatgcaaatgggctCatcctcatcccagtttttgt	8	11	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	113169407	113169407	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.8473	p.E2825Q	0.994	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	43	0	0	119	22	15.6	-	-	-	G	113169407	C	G	113169407	3	3	566	1	0	0	0	0	1	0	0	0	15511	835	29	2	2286	2	SVEP1	9	113169407	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	11188792	113169407	28044024	74	49731										
RC3H2	0	genome.wustl.edu	37	chr9	125642124	125642124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	acagctaccattgcattttcCagctgctcccaagttggtga	8	12	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	125642124	125642124	C	T	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	silent	c.1122	p.L374	0.993	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	108	0	0	155	34	17.99	-	-	-	T	125642124	C	T	125642124	2	4	566	1	0	0	0	0	0	0	0	1	13250	581	21	4		4	RC3H2	9	125642124	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	12472717	125642124	15571307	75	49732										
ABCA2	0	genome.wustl.edu	37	chr9	139910551	139910551	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aggttcttgcggatctcatcCatctccgtgcggatgtcgtg	12	11	3	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	139910551	139910551	C	T	SNP	ABCA2	ENST00000479446	human	ensembl	69_37n	-1	known	nonsense	c.1229	p.W410*	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA2	HGNC	ENSG00000107331	20	0	0	64	22	25.58	-	-	-	T	139910551	C	T	139910551	4	4	566	1	0	0	0	0	0	1	0	0	32	594	21	4	4242	4	ABCA2	9	139910551	Nonsense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	14268427	139910551	1302880	76	49733										
PNPLA7	0	genome.wustl.edu	37	chr9	140437118	140437118	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcctggatgcagacctccagCcgcccgtcctgcaccacaca	8	19	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	9	140437118	140437118	C	A	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	silent	c.642	p.R214	0.998	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	8	0	0	53	18	25.35	-	-	-	A	140437118	C	A	140437118	2	1	566	1	0	0	0	0	0	0	0	1	12244	726	26	4		4	PNPLA7	9	140437118	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	526567	140437118	776313	77	49734										
SFMBT2	0	genome.wustl.edu	37	chr10	7217979	7217979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggttttggtatgaatggagcAgttctctgggcagttttcag	14	5	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	10	7217979	7217979	A	G	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.1957	p.C653R	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	204	0	0	216	87	28.71	-	-	-	G	7217979	A	G	7217979	3	3	566	1	0	0	0	0	1	0	0	0	14246	188	7	5	747	5	SFMBT2	10	7217979	Missense_Mutation	SNP	A	TCGA-BH-A0W7-01A-11D-A10Y-09		7217979	128316768	78	49735										
NUDT13	0	genome.wustl.edu	37	chr10	74890577	74890577	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagaatgggactttcccattCtggctgccccctaagttagc	9	13	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	10	74890577	74890577	C	T	SNP	NUDT13	ENST00000357321	human	ensembl	69_37n	1	known	silent	c.975	p.F325	0.999	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321	61	0	0	92	29	23.97	-	-	-	T	74890577	C	T	74890577	2	4	566	1	0	0	0	0	0	0	0	1	10802	912	32	2		2	NUDT13	10	74890577	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	67672598	74890577	60644170	79	49736										
PDE6C	0	genome.wustl.edu	37	chr10	95380536	95380536	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctgaattttccaaacaggatGaagaggtaatgctaaccctg	9	8	0	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	10	95380536	95380536	G	A	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.628	p.E210K	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	172	0	0	220	64	22.46	-	-	-	A	95380536	G	A	95380536	3	1	566	1	0	0	0	0	1	0	0	0	11720	1291	45	2	634	2	PDE6C	10	95380536	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	20489959	95380536	40154211	80	49737										
TM9SF3	0	genome.wustl.edu	37	chr10	98303890	98303890	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	taaatggctatgaaattgatGaagaaggcagtgccacacac	10	7	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	10	98303890	98303890	G	A	SNP	TM9SF3	ENST00000371142	human	ensembl	69_37n	-1	known	silent	c.1128	p.F376	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	101	0	0	123	29	19.08	-	-	-	A	98303890	G	A	98303890	2	1	566	1	0	0	0	0	0	0	0	1	16074	1281	45	2		2	TM9SF3	10	98303890	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	2923354	98303890	37230857	81	49738										
ABCC2	0	genome.wustl.edu	37	chr10	101567200	101567200	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caagtacaaaacctccggaaGaaagagctcaagaacctgct	8	11	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	10	101567200	101567200	G	C	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.1590	p.K530N	0.998	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	203	0	0	178	56	23.93	-	-	-	C	101567200	G	C	101567200	3	2	566	1	0	0	0	0	1	0	0	0	53	933	33	2	1636	2	ABCC2	10	101567200	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	3263310	101567200	33967547	82	49739										
AP2A2	0	genome.wustl.edu	37	chr11	986843	986843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gccagtttctgcagcaccgcGagaccaacctgcgctacctg	10	16	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	986843	986843	G	A	SNP	AP2A2	ENST00000332231	human	ensembl	69_37n	1	known	missense	c.1024	p.E342K	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020	16	0	0	98	21	17.65	-	-	-	A	986843	G	A	986843	3	1	566	1	0	0	0	0	1	0	0	0	741	1059	37	1	1055	1	AP2A2	11	986843	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		986843	134019673	83	49740										
OR52K1	0	genome.wustl.edu	37	chr11	4510827	4510827	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cagttctccagcttgcctctCaggaggcccgctacaaggca	10	15	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	4510827	4510827	C	G	SNP	OR52K1	ENST00000307632	human	ensembl	69_37n	1	known	missense	c.697	p.Q233E	0.037	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52K1	HGNC	ENSG00000196778	305	0	0	604	174	22.31	-	-	-	G	4510827	C	G	4510827	3	3	566	1	0	0	0	0	1	0	0	0	11196	827	29	2	699	2	OR52K1	11	4510827	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	3523984	4510827	130495689	84	49741										
BTBD10	0	genome.wustl.edu	37	chr11	13443293	13443293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgatctgtcacttgaccttCgtctatctcttgatctctca	6	12	6	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	13443293	13443293	C	T	SNP	BTBD10	ENST00000278174	human	ensembl	69_37n	-1	known	missense	c.194	p.R65Q	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	102	0	0	185	62	25.1	-	-	-	T	13443293	C	T	13443293	3	4	566	1	0	0	0	0	1	0	0	0	1546	884	31	1	1261	1	BTBD10	11	13443293	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	8932466	13443293	121563223	85	49742										
OR5D14	0	genome.wustl.edu	37	chr11	55563592	55563592	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgtgagtatactgctctcatCtctgtgtctggctctgatat	9	9	4	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	55563592	55563592	C	G	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	missense	c.561	p.I187M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	165	0	0	248	49	16.5	-	-	-	G	55563592	C	G	55563592	3	3	566	1	0	0	0	0	1	0	0	0	11228	903	32	2	563	2	OR5D14	11	55563592	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	42120299	55563592	79442924	86	49743										
AHNAK	0	genome.wustl.edu	37	chr11	62287266	62287266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgggcctttcaaagtcccttCaaccttagggacagacacat	8	12	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	62287266	62287266	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.14623	p.E4875K	0.994	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	126	0	0	111	27	19.57	-	-	-	T	62287266	C	T	62287266	3	4	566	1	0	0	0	0	1	0	0	0	414	835	29	2	3169	2	AHNAK	11	62287266	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	6723674	62287266	72719250	87	49744										
AMOTL1	0	genome.wustl.edu	37	chr11	94501722	94501722	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggaacttgtgagcctgcggtGaaaggtaaccagcccccact	12	12	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	94501722	94501722	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	silent	c.45	p.V15	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	11	0	0	58	11	15.94	-	-	-	A	94501722	G	A	94501722	2	1	566	1	0	0	0	0	0	0	0	1	583	1277	45	2		2	AMOTL1	11	94501722	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	32214456	94501722	40504794	88	49745										
TRPC6	0	genome.wustl.edu	37	chr11	101324393	101324393	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caactcaccttcgttcacttCatcactctccttatctatct	1	16	7	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	11	101324393	101324393	C	T	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.2632	p.E878K	1.000	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	331	0	0	414	129	23.76	-	-	-	T	101324393	C	T	101324393	3	4	566	1	0	0	0	0	1	0	0	0	16679	835	29	2	171	2	TRPC6	11	101324393	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	6822671	101324393	33682123	89	49746										
KCNA5	0	genome.wustl.edu	37	chr12	5155077	5155077	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cccctagagaagtgtaacgtCaaggccaagagcaacgtgga	12	10	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	5155077	5155077	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	silent	c.1764	p.V588	1.000	prints_K_chnl_volt-dep_Kv1.5	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	12	0	0	14	20	58.82	-	-	-	T	5155077	C	T	5155077	2	4	566	1	0	0	0	0	0	0	0	1	8060	813	29	2		2	KCNA5	12	5155077	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		5155077	128696818	90	49747										
SLCO1B3	0	genome.wustl.edu	37	chr12	21054322	21054322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tatattttggggctctgattGataaaacatgtatgaagtgg	11	3	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	21054322	21054322	G	C	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.1786	p.D596H	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	446	1	0.22	349	81	18.84	-	-	-	C	21054322	G	C	21054322	3	2	566	1	0	0	0	0	1	0	0	0	14813	1290	45	2	1836	2	SLCO1B3	12	21054322	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	15899245	21054322	112797573	91	49748										
BICD1	0	genome.wustl.edu	37	chr12	32491861	32491861	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cccccttccatgagtgaattCatccaagggcaccggctcag	9	15	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	32491861	32491861	C	T	SNP	BICD1	ENST00000281474	human	ensembl	69_37n	1	known	silent	c.2712	p.F904	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC-like	-	no_errors	BICD1	HGNC	ENSG00000151746	78	0	0	61	17	21.79	-	-	-	T	32491861	C	T	32491861	2	4	566	1	0	0	0	0	0	0	0	1	1433	825	29	2		2	BICD1	12	32491861	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	11437539	32491861	101360034	92	49749										
ALG10B	0	genome.wustl.edu	37	chr12	38712174	38712174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atgttgtctgctccattgggAtgctcagatttgttaatctt	9	7	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	38712174	38712174	A	C	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	1	known	missense	c.283	p.M95L	0.999	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	430	0	0	449	162	26.47	-	-	-	C	38712174	A	C	38712174	3	2	566	1	0	0	0	0	1	0	0	0	512	333	12	5	289	5	ALG10B	12	38712174	Missense_Mutation	SNP	A	TCGA-BH-A0W7-01A-11D-A10Y-09	6220313	38712174	95139721	93	49750										
KRT72	0	genome.wustl.edu	37	chr12	52992731	52992731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	catgttcctcagctccgaatCcagcctcaccccgtccccag	6	20	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	52992731	52992731	C	T	SNP	KRT72	ENST00000293745	human	ensembl	69_37n	-1	known	missense	c.592	p.D198N	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486	194	0	0	343	140	28.93	-	-	-	T	52992731	C	T	52992731	3	4	566	1	0	0	0	0	1	0	0	0	8538	855	30	2	975	2	KRT72	12	52992731	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	14280557	52992731	80859164	94	49751										
ESPL1	0	genome.wustl.edu	37	chr12	53662952	53662952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggcatctggggagcctgctgGagctggcagagctggcctgt	18	10	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	53662952	53662952	G	C	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.226	p.E76Q	1.000	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	48	0	0	167	52	23.74	-	-	-	C	53662952	G	C	53662952	3	2	566	1	0	0	0	0	1	0	0	0	5290	1175	41	2	232	2	ESPL1	12	53662952	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	670221	53662952	80188943	95	49752										
ERBB3	0	genome.wustl.edu	37	chr12	56490901	56490901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gactatgcccagggtcatctCtgcagcttgtcactcaatat	8	12	4	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	56490901	56490901	C	G	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.2347	p.L783V	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	74	0	0	166	37	18.23	-	-	-	G	56490901	C	G	56490901	3	3	566	1	0	0	0	0	1	0	0	0	5245	912	32	2	2556	2	ERBB3	12	56490901	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	2827949	56490901	77360994	96	49753										
ESYT1	0	genome.wustl.edu	37	chr12	56531365	56531365	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gggactggtgaagggcaagtCagacccctatgtcaaactaa	12	9	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	56531365	56531365	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	1	known	missense	c.2051	p.S684L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	90	0	0	177	40	18.43	-	-	-	T	56531365	C	T	56531365	3	4	566	1	0	0	0	0	1	0	0	0	5301	838	29	2	2121	2	ESYT1	12	56531365	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	40464	56531365	77320530	97	49754										
HMGA2	0	genome.wustl.edu	37	chr12	66308905	66308905	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gaaacagtaccaaaaggagtCactgaattgtcattggagga	11	6	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	66308905	66308905	C	T	SNP	HMGA2	ENST00000354636	human	ensembl	69_37n	1	known	missense	c.316	p.H106Y	0.021	NULL	pfam_AT_hook_DNA-bd_motif,smart_AT_hook_DNA-bd_motif,prints_HMGI/HMGY,prints_AT_hook-like	-	no_errors	HMGA2	HGNC	ENSG00000149948	143	0	0	133	41	23.56	-	-	-	T	66308905	C	T	66308905	3	4	566	1	0	0	0	0	1	0	0	0	7275	826	29	2	330	2	HMGA2	12	66308905	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	9777540	66308905	67542990	98	49755										
LGR5	0	genome.wustl.edu	37	chr12	71976250	71976250	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctgcagatgaacgtgaccttGaagatttcctgcttgacttt	9	9	0	6			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	71976250	71976250	G	C	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	missense	c.1567	p.E523Q	1.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	106	0	0	188	52	21.67	-	-	-	C	71976250	G	C	71976250	3	2	566	1	0	0	0	0	1	0	0	0	8812	1291	45	2	1633	2	LGR5	12	71976250	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	5667345	71976250	61875645	99	49756										
TRHDE	0	genome.wustl.edu	37	chr12	73012710	73012710	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aatattcctctggagattatCagatacctgtctgaggagaa	9	7	3	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	73012710	73012710	C	G	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.2226	p.I742M	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	46	0	0	51	20	28.17	-	-	-	G	73012710	C	G	73012710	3	3	566	1	0	0	0	0	1	0	0	0	16575	816	29	2	2276	2	TRHDE	12	73012710	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1036460	73012710	60839185	100	49757										
KIAA1033	0	genome.wustl.edu	37	chr12	105557985	105557985	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gaaatacctgaaggagataaGagcagttgctaagcaacaga	11	6	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	105557985	105557985	G	A	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.3254	p.R1085K	0.998	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	152	0	0	208	38	15.45	-	-	-	A	105557985	G	A	105557985	3	1	566	1	0	0	0	0	1	0	0	0	8258	942	33	2	3376	2	KIAA1033	12	105557985	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	32545275	105557985	28293910	101	49758										
HNF1A	0	genome.wustl.edu	37	chr12	121426669	121426669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cgtgtggcgaagatggtcaaGtcctacctgcagcagcacaa	12	11	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	121426669	121426669	G	T	SNP	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	missense	c.360	p.K120N	1.000	pfam_HNF-1_N,superfamily_Lambda_DNA-bd_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	34	0	0	116	47	28.83	-	-	-	T	121426669	G	T	121426669	3	4	566	1	0	0	0	0	1	0	0	0	7302	1020	36	4	366	4	HNF1A	12	121426669	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	15868684	121426669	12425226	102	49759										
GPR133	0	genome.wustl.edu	37	chr12	131476808	131476808	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	acagatgcctaccatcccatCataaccaacctgacagaaga	5	14	1	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	12	131476808	131476808	C	T	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	silent	c.837	p.I279	0.990	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	151	0	0	140	34	19.54	-	-	-	T	131476808	C	T	131476808	2	4	566	1	0	0	0	0	0	0	0	1	6693	816	29	2		2	GPR133	12	131476808	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	10050139	131476808	2375087	103	49760										
HSPH1	0	genome.wustl.edu	37	chr13	31719870	31719870	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tactctagatttttctccatCtttctgtgcagaaacattct	4	10	5	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	13	31719870	31719870	C	G	SNP	HSPH1	ENST00000445273	human	ensembl	69_37n	-1	known	missense	c.1420	p.D474H	0.998	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694	121	0	0	146	49	25	-	-	-	G	31719870	C	G	31719870	3	3	566	1	0	0	0	0	1	0	0	0	7485	913	32	2	1194	2	HSPH1	13	31719870	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		31719870	83450008	104	49761										
OR4K15	0	genome.wustl.edu	37	chr14	20443846	20443846	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcttgtttcttacattttcaCtactttatctagcaattctg	3	9	5	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	14	20443846	20443846	C	A	SNP	OR4K15	ENST00000305051	human	ensembl	69_37n	1	known	missense	c.169	p.L57I	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488	271	0	0	396	104	20.8	-	-	-	A	20443846	C	A	20443846	3	1	566	1	0	0	0	0	1	0	0	0	11143	564	20	4	171	4	OR4K15	14	20443846	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		20443846	86905694	105	49762										
CHD8	0	genome.wustl.edu	37	chr14	21863271	21863271	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aaatggcctggctgttgggtCacctgggctgtggaaaacaa	14	8	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	14	21863271	21863271	C	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	silent	c.5190	p.V1730	0.998	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	41	0	0	93	14	13.08	-	-	-	A	21863271	C	A	21863271	2	1	566	1	0	0	0	0	0	0	0	1	3360	813	29	2		2	CHD8	14	21863271	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	1419425	21863271	85486269	106	49763										
PCNX	0	genome.wustl.edu	37	chr14	71492886	71492886	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agtttatttctgcatatgttGcggtcttatttggctcttgg	10	6	3	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	14	71492886	71492886	G	C	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.3236	p.C1079S	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	246	1	0.4	325	57	14.92	-	-	-	C	71492886	G	C	71492886	3	2	566	1	0	0	0	0	1	0	0	0	11664	1319	46	4	3290	4	PCNX	14	71492886	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	49629615	71492886	35856654	107	49764										
SERPINA12	0	genome.wustl.edu	37	chr14	94964318	94964318	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggctgcagcctctggtcaatGaacagcgtgttcccaatgct	11	12	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	14	94964318	94964318	G	A	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	silent	c.417	p.F139	0.430	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	128	0	0	343	71	17.15	-	-	-	A	94964318	G	A	94964318	2	1	566	1	0	0	0	0	0	0	0	1	14177	1281	45	2		2	SERPINA12	14	94964318	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	23471432	94964318	12385222	108	49765										
GABRA5	0	genome.wustl.edu	37	chr15	27188366	27188366	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgcctgacccccgcaggggtCaccacggtgctgaccatgac	12	16	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	15	27188366	27188366	C	T	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	silent	c.882	p.V294	0.948	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	20	0	0	40	8	16.67	-	-	-	T	27188366	C	T	27188366	2	4	566	1	0	0	0	0	0	0	0	1	6213	813	29	2		2	GABRA5	15	27188366	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		27188366	75343026	109	49766										
RYR3	0	genome.wustl.edu	37	chr15	33952547	33952547	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aaggtggagaccgagcgtgtGagcgagcgccacggctgggt	19	9	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	15	33952547	33952547	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.4545	p.V1515	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	23	0	0	62	24	27.91	-	-	-	A	33952547	G	A	33952547	2	1	566	1	0	0	0	0	0	0	0	1	13856	1277	45	2		2	RYR3	15	33952547	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	6764181	33952547	68578845	110	49767										
MAPKBP1	0	genome.wustl.edu	37	chr15	42104774	42104774	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgacagcagtgtccttctctGaggattgcagctactttgtc	10	10	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	15	42104774	42104774	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	missense	c.559	p.E187K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	23	0	0	106	26	19.7	-	-	-	A	42104774	G	A	42104774	3	1	566	1	0	0	0	0	1	0	0	0	9363	1291	45	2	581	2	MAPKBP1	15	42104774	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	8152227	42104774	60426618	111	49768										
ACSBG1	0	genome.wustl.edu	37	chr15	78475050	78475050	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggccccactgcccataccgtGtacacattggccatcttgtt	8	15	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	15	78475050	78475050	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	silent	c.741	p.Y247	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	89	0	0	159	47	22.82	-	-	-	A	78475050	G	A	78475050	2	1	566	1	0	0	0	0	0	0	0	1	173	1372	48	4		4	ACSBG1	15	78475050	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	36370276	78475050	24056342	112	49769										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84651757	84651757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gctgatatatcagctggtggCcgaattagccaaggcacagc	12	10	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	15	84651757	84651757	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.3377	p.A1126V	0.857	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	26	0	0	50	19	27.14	-	-	-	T	84651757	C	T	84651757	3	4	566	1	0	0	0	0	1	0	0	0	276	739	26	4	3455	4	ADAMTSL3	15	84651757	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	6176707	84651757	17879635	113	49770										
ZNF174	0	genome.wustl.edu	37	chr16	3452196	3452196	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tctggaccccaagaggctctCtcccagctccgacagctctg	9	17	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	3452196	3452196	C	T	SNP	ZNF174	ENST00000268655	human	ensembl	69_37n	1	known	silent	c.192	p.L64	0.029	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	39	0	0	84	19	18.45	-	-	-	T	3452196	C	T	3452196	2	4	566	1	0	0	0	0	0	0	0	1	17840	900	32	2		2	ZNF174	16	3452196	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		3452196	86902557	114	49771										
CREBBP	0	genome.wustl.edu	37	chr16	3778745	3778745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tacttggctgtgcgctgtttGatgaaagctgccattagctg	12	8	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	3778745	3778745	G	C	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.6303	p.I2101M	0.986	pfam_Nuc_rcpt_coact_CREBbp,superfamily_Nuc_rcpt_coact	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	11	0	0	62	13	17.33	-	-	-	C	3778745	G	C	3778745	3	2	566	1	0	0	0	0	1	0	0	0	3891	1280	45	2	1029	2	CREBBP	16	3778745	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	326549	3778745	86576008	115	49772										
PDXDC1	0	genome.wustl.edu	37	chr16	15127253	15127253	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cgggagatagaggagaactcGagggtccgtagcacccatca	14	10	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	15127253	15127253	G	A	SNP	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	silent	c.1809	p.S603	0.944	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	18	0	0	72	25	25.77	-	-	-	A	15127253	G	A	15127253	2	1	566	1	0	0	0	0	0	0	0	1	11769	1045	37	1		1	PDXDC1	16	15127253	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	11348508	15127253	75227500	116	49773										
GPR139	0	genome.wustl.edu	37	chr16	20043114	20043114	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tactggtacaccagcatcttGatgcagtgtgagtttgccgg	12	9	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	20043114	20043114	G	C	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	missense	c.1005	p.I335M	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	82	0	0	219	35	13.78	-	-	-	C	20043114	G	C	20043114	3	2	566	1	0	0	0	0	1	0	0	0	6698	1280	45	2	60	2	GPR139	16	20043114	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	4915861	20043114	70311639	117	49774										
NSMCE1	0	genome.wustl.edu	37	chr16	27238139	27238139	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	caggatggcccggccgtgcaGggtgaactccccttccttct	12	15	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	27238139	27238139	G	A	SNP	NSMCE1	ENST00000361439	human	ensembl	69_37n	-1	known	silent	c.502	p.L168	0.982	pfam_SMC_Nse1	pfam_SMC_Nse1,pfam_Znf_RING-like,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Znf_RING	-	no_errors	NSMCE1	HGNC	ENSG00000169189	18	0	0	80	27	25.23	-	-	-	A	27238139	G	A	27238139	2	1	566	1	0	0	0	0	0	0	0	1	10748	991	35	4		4	NSMCE1	16	27238139	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	7195025	27238139	63116614	118	49775										
XPO6	0	genome.wustl.edu	37	chr16	28109862	28109862	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cccaggcagtagcaggcctaGagcttcacagtgccaggggg	15	12	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	28109862	28109862	G	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	silent	c.3375	p.L1125	0.998	NULL	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	22	0	0	163	31	15.98	-	-	-	C	28109862	G	C	28109862	2	2	566	1	0	0	0	0	0	0	0	1	17545	929	33	2		2	XPO6	16	28109862	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	871723	28109862	62244891	119	49776										
COG8	0	genome.wustl.edu	37	chr16	69370510	69370510	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ttccggacacaggtgtccatGagctgaggaatctccagtat	11	10	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	69370510	69370510	G	A	SNP	COG8	ENST00000562595	human	ensembl	69_37n	-1	putative	missense	c.424	p.H142Y	0.838	pfam_Dor1	pfam_Dor1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COG8	HGNC	ENSG00000213380	123	0	0	159	51	24.29	-	-	-	A	69370510	G	A	69370510	3	1	566	1	0	0	0	0	1	0	0	0	3694	1277	45	2	1371	2	COG8	16	69370510	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	41260648	69370510	20984243	120	49777										
HYDIN	0	genome.wustl.edu	37	chr16	70852401	70852401	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	accatctcgatggttttgatGatgcctgaagggatgaccct	11	9	1	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	16	70852401	70852401	G	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.14499	p.I4833	0.674	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	48	0	0	76	28	26.92	-	-	-	A	70852401	G	A	70852401	2	1	566	1	0	0	0	0	0	0	0	1	7521	1280	45	2		2	HYDIN	16	70852401	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1481891	70852401	19502352	121	49778										
OR1A2	0	genome.wustl.edu	37	chr17	3101617	3101617	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgaccagttacagccccaaaGatgcagtgataactgtgatg	10	9	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	3101617	3101617	G	C	SNP	OR1A2	ENST00000381951	human	ensembl	69_37n	1	known	missense	c.805	p.D269H	0.343	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150	136	0	0	89	41	31.54	-	-	-	C	3101617	G	C	3101617	3	2	566	1	0	0	0	0	1	0	0	0	11023	942	33	2	807	2	OR1A2	17	3101617	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		3101617	78093593	122	49779										
DNAH2	0	genome.wustl.edu	37	chr17	7671380	7671380	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aattagccaaagagtataagGtggggagaaacggcggggag	17	4	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	7671380	7671380	G	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	splice_site	c.3837+1	e22+1	1.000	-	-	-	no_errors	DNAH2	HGNC	ENSG00000183914	32	0	0	60	14	18.92	-	-	-	T	7671380	G	T	7671380	5	4	566	1	0	0	0	0	0	0	1	0	4638	1275	44	4	3924	4	DNAH2	17	7671380	Splice_Site	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	4569763	7671380	73523830	123	49780										
MAP2K4	0	genome.wustl.edu	37	chr17	12032510	12032510	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agtggaatagtgtatttgatCaactaacacaagtcgtgaaa	9	5	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	12032510	12032510	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	nonsense	c.979	p.Q327*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	115	0	0	91	43	32.09	-	-	-	T	12032510	C	T	12032510	4	4	566	1	0	0	0	0	0	1	0	0	9310	827	29	2	980	2	MAP2K4	17	12032510	Nonsense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	4361130	12032510	69162700	124	49781										
NLK	0	genome.wustl.edu	37	chr17	26495572	26495572	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tatcgggctccagaaatcctGatgggcagccgtcattacag	11	11	1	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	26495572	26495572	G	A	SNP	NLK	ENST00000407008	human	ensembl	69_37n	1	known	silent	c.936	p.L312	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NLK	HGNC	ENSG00000087095	157	0	0	223	49	18.01	-	-	-	A	26495572	G	A	26495572	2	1	566	1	0	0	0	0	0	0	0	1	10538	1277	45	2		2	NLK	17	26495572	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	14463062	26495572	54699638	125	49782										
KRTAP1-5	0	genome.wustl.edu	37	chr17	39183074	39183074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ccacctgatacgggtgctcaCagctccactgctgccctcct	8	18	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	39183074	39183074	C	T	SNP	KRTAP1-5	ENST00000361883	human	ensembl	69_37n	-1	known	missense	c.334	p.V112M	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-5	HGNC	ENSG00000221852	11	0	0	68	11	13.92	-	-	-	T	39183074	C	T	39183074	3	4	566	1	0	0	0	0	1	0	0	0	8557	478	17	4	194	4	KRTAP1-5	17	39183074	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	12687502	39183074	42012136	126	49783										
JUP	0	genome.wustl.edu	37	chr17	39919445	39919445	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tccacaccgctgttctgtgtCaccagcgtcttgttcttgct	8	14	4	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	39919445	39919445	C	G	SNP	JUP	ENST00000310706	human	ensembl	69_37n	-1	known	silent	c.1287	p.V429	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	JUP	HGNC	ENSG00000173801	56	0	0	208	56	21.21	-	-	-	G	39919445	C	G	39919445	2	3	566	1	0	0	0	0	0	0	0	1	8026	813	29	2		2	JUP	17	39919445	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	736371	39919445	41275765	127	49784										
NBR1	0	genome.wustl.edu	37	chr17	41341611	41341611	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gctccatattctagttcagaGaacaagtggttaacgaaacg	9	8	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	41341611	41341611	G	A	SNP	NBR1	ENST00000341165	human	ensembl	69_37n	1	known	missense	c.487	p.E163K	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554	33	0	0	40	11	21.57	-	-	-	A	41341611	G	A	41341611	3	1	566	1	0	0	0	0	1	0	0	0	10272	943	33	2	513	2	NBR1	17	41341611	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1422166	41341611	39853599	128	49785										
HDAC5	0	genome.wustl.edu	37	chr17	42164964	42164964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	cccggggcatggtcagggctCcctcccccagcaagacctcc	11	19	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	42164964	42164964	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	missense	c.1703	p.G568E	0.630	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	38	0	0	76	42	35.59	-	-	-	T	42164964	C	T	42164964	3	4	566	1	0	0	0	0	1	0	0	0	7061	855	30	2	1728	2	HDAC5	17	42164964	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	823353	42164964	39030246	129	49786										
HSF5	0	genome.wustl.edu	37	chr17	56540556	56540556	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atgcaactcatcaactatctGaaagacagcctctaggttta	6	10	4	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	56540556	56540556	G	A	SNP	HSF5	ENST00000323777	human	ensembl	69_37n	-1	known	nonsense	c.1129	p.Q377*	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160	79	0	0	96	23	19.33	-	-	-	A	56540556	G	A	56540556	4	1	566	1	0	0	0	0	0	1	0	0	7450	1299	45	2	673	2	HSF5	17	56540556	Nonsense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	14375592	56540556	24654654	130	49787										
BCAS3	0	genome.wustl.edu	37	chr17	59118217	59118217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	accctctgctcctcgctgcaGatgcagtacagtattatcag	8	13	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	59118217	59118217	G	A	SNP	BCAS3	ENST00000390652	human	ensembl	69_37n	1	known	missense	c.2038	p.D680N	1.000	pfam_BCAS3	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376	121	0	0	187	49	20.76	-	-	-	A	59118217	G	A	59118217	3	1	566	1	0	0	0	0	1	0	0	0	1356	942	33	2	2112	2	BCAS3	17	59118217	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	2577661	59118217	22076993	131	49788										
UBE2O	0	genome.wustl.edu	37	chr17	74392693	74392693	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtggctgcctcttcactgatCaccactcccttgtcctcagg	8	16	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	74392693	74392693	C	T	SNP	UBE2O	ENST00000319380	human	ensembl	69_37n	-1	known	silent	c.2325	p.V775	0.998	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	18	0	0	38	14	26.92	-	-	-	T	74392693	C	T	74392693	2	4	566	1	0	0	0	0	0	0	0	1	16965	813	29	2		2	UBE2O	17	74392693	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	15274476	74392693	6802517	132	49789										
TMC6	0	genome.wustl.edu	37	chr17	76116778	76116778	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgtccagcaacatgaggacGaagtccatcaccaggaaccg	11	12	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	76116778	76116778	G	A	SNP	TMC6	ENST00000322914	human	ensembl	69_37n	-1	known	silent	c.1671	p.F557	0.856	pfam_TMC	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524	48	0	0	157	57	26.64	-	-	-	A	76116778	G	A	76116778	2	1	566	1	0	0	0	0	0	0	0	1	16084	1049	37	1		1	TMC6	17	76116778	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1724085	76116778	5078432	133	49790										
DNAH17	0	genome.wustl.edu	37	chr17	76455115	76455115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tttgatccgggacagcttctCttgtgcctctgccagctctg	10	13	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	17	76455115	76455115	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.9787	p.E3263K	1.000	superfamily_HR1_rho-bd	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	40	0	0	140	43	23.5	-	-	-	T	76455115	C	T	76455115	3	4	566	1	0	0	0	0	1	0	0	0	4637	922	32	2	3643	2	DNAH17	17	76455115	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	338337	76455115	4740095	134	49791										
PPP4R1	0	genome.wustl.edu	37	chr18	9588772	9588772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aagaattttgaaaaagcataTggtattgaaggccggttttc	10	4	0	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	18	9588772	9588772	T	C	SNP	PPP4R1	ENST00000578875	human	ensembl	69_37n	-1	known	missense	c.268	p.I90V	1.000	NULL	NULL	-	no_errors	PPP4R1	HGNC	ENSG00000154845	179	0	0	219	76	25.76	-	-	-	C	9588772	T	C	9588772	3	2	566	1	0	0	0	0	1	0	0	0	12480	1451	51	5	2541	5	PPP4R1	18	9588772	Missense_Mutation	SNP	T	TCGA-BH-A0W7-01A-11D-A10Y-09		9588772	68488476	135	49792										
TCF4	0	genome.wustl.edu	37	chr18	52896088	52896088	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctgcactgacctcggacttgCtgctccagactgaggatgac	11	13	0	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	18	52896088	52896088	C	G	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.2175	p.Q725H	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	17	0	0	53	14	20.59	-	-	-	G	52896088	C	G	52896088	3	3	566	1	0	0	0	0	1	0	0	0	15790	796	28	4	154	4	TCF4	18	52896088	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	43307316	52896088	25181160	136	49793										
PTBP1	0	genome.wustl.edu	37	chr19	810756	810756	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggaggcggtccaggccctcaTtgacctgcacaaccacgacc	11	16	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	810756	810756	T	G	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	missense	c.1604	p.I535S	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	23	0	0	71	19	20.88	-	-	-	G	810756	T	G	810756	3	3	566	1	0	0	0	0	1	0	0	0	12805	1493	52	5	1662	5	PTBP1	19	810756	Missense_Mutation	SNP	T	TCGA-BH-A0W7-01A-11D-A10Y-09		810756	58318227	137	49794										
CD97	0	genome.wustl.edu	37	chr19	14513553	14513553	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tgtccaactcagacgcctctCtgccgtcaactccatctttc	5	17	4	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	14513553	14513553	C	T	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	missense	c.1328	p.S443F	0.525	prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	129	0	0	362	109	23.14	-	-	-	T	14513553	C	T	14513553	3	4	566	1	0	0	0	0	1	0	0	0	3078	913	32	2	1374	2	CD97	19	14513553	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	13702797	14513553	44615430	138	49795										
OR7A17	0	genome.wustl.edu	37	chr19	14991294	14991294	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctttatgtctttattcctcaGactgtagataaaggggttca	8	7	3	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	14991294	14991294	G	C	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	missense	c.874	p.L292V	0.881	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	150	0	0	197	41	17.23	-	-	-	C	14991294	G	C	14991294	3	2	566	1	0	0	0	0	1	0	0	0	11288	933	33	2	57	2	OR7A17	19	14991294	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	477741	14991294	44137689	139	49796										
ZNF570	0	genome.wustl.edu	37	chr19	37975503	37975503	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	atcagagagttcacacgggaGagaaaccctatgaatgtatc	10	8	2	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	37975503	37975503	G	A	SNP	ZNF570	ENST00000330173	human	ensembl	69_37n	1	known	missense	c.979	p.E327K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827	98	0	0	129	27	17.31	-	-	-	A	37975503	G	A	37975503	3	1	566	1	0	0	0	0	1	0	0	0	18098	943	33	2	993	2	ZNF570	19	37975503	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	22984209	37975503	21153480	140	49797										
PSG6	0	genome.wustl.edu	37	chr19	43420539	43420539	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agattctggggcaaattgtgGacaagtagaagaacatcctt	11	6	1	3			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	43420539	43420539	G	C	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	silent	c.165	p.V55	0.009	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	485	0	0	537	124	18.7	-	-	-	C	43420539	G	C	43420539	2	2	566	1	0	0	0	0	0	0	0	1	12739	1161	41	2		2	PSG6	19	43420539	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	5445036	43420539	15708444	141	49798										
LMTK3	0	genome.wustl.edu	37	chr19	49001389	49001389	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tccccggcctctggggacctCagctccccattctccagcgc	9	20	3	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	49001389	49001389	C	G	SNP	LMTK3	ENST00000270238	human	ensembl	69_37n	-1	known	silent	c.3024	p.L1008	0.155	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	101	1	0.98	215	45	17.31	-	-	-	G	49001389	C	G	49001389	2	3	566	1	0	0	0	0	0	0	0	1	8916	813	29	2		2	LMTK3	19	49001389	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	5580850	49001389	10127594	142	49799										
TFPT	0	genome.wustl.edu	37	chr19	54610364	54610364	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tattgggcatgcgtcagtcaGaggctgggctggccagggtc	17	9	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	19	54610364	54610364	G	C	SNP	TFPT	ENST00000391759	human	ensembl	69_37n	-1	known	missense	c.755	p.S252C	1.000	NULL	NULL	-	no_errors	TFPT	HGNC	ENSG00000105619	55	0	0	108	35	24.48	-	-	-	C	54610364	G	C	54610364	3	2	566	1	0	0	0	0	1	0	0	0	15905	942	33	2	10	2	TFPT	19	54610364	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	5608975	54610364	4518619	143	49800										
TRIB3	0	genome.wustl.edu	37	chr20	368750	368750	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gataccgagcgtcccgtccaGaaacgagctcgaagtgggcc	13	13	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	368750	368750	G	C	SNP	TRIB3	ENST00000422053	human	ensembl	69_37n	1	known	missense	c.177	p.Q59H	0.367	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TRIB3	HGNC	ENSG00000101255	18	0	0	92	19	17.12	-	-	-	C	368750	G	C	368750	3	2	566	1	0	0	0	0	1	0	0	0	16580	933	33	2	98	2	TRIB3	20	368750	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		368750	62656770	144	49801										
CSNK2A1	0	genome.wustl.edu	37	chr20	480564	480564	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tttatttcacgcttaattttCttcttttttactggctgaaa	4	7	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	480564	480564	C	A	SNP	CSNK2A1	ENST00000217244	human	ensembl	69_37n	-1	known	missense	c.228	p.K76N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266	191	0	0	145	31	17.61	-	-	-	A	480564	C	A	480564	3	1	566	1	0	0	0	0	1	0	0	0	3989	912	32	2	987	2	CSNK2A1	20	480564	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	111814	480564	62544956	145	49802										
PCSK2	0	genome.wustl.edu	37	chr20	17389950	17389950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcagcagcaacgacccctatCcttaccctcggtacacagat	6	16	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	17389950	17389950	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	1	known	missense	c.586	p.P196S	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	147	0	0	252	86	25.44	-	-	-	T	17389950	C	T	17389950	3	4	566	1	0	0	0	0	1	0	0	0	11674	855	30	2	608	2	PCSK2	20	17389950	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	16909386	17389950	45635570	146	49803										
RALGAPA2	0	genome.wustl.edu	37	chr20	20484088	20484088	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtagcatagtaaggggccgtCtgcccggtgctgccattgcg	15	11	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	20484088	20484088	C	G	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.5115	p.Q1705H	0.998	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	37	0	0	121	25	17.12	-	-	-	G	20484088	C	G	20484088	3	3	566	1	0	0	0	0	1	0	0	0	13097	912	32	2	526	2	RALGAPA2	20	20484088	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	3094138	20484088	42541432	147	49804										
NFS1	0	genome.wustl.edu	37	chr20	34262522	34262522	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agccgctctgacaactttgaGattcgcttgtggtcatacta	9	10	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	34262522	34262522	G	A	SNP	NFS1	ENST00000374092	human	ensembl	69_37n	-1	known	silent	c.966	p.I322	0.974	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	-	no_errors	NFS1	HGNC	ENSG00000244005	115	1	0.86	242	59	19.6	-	-	-	A	34262522	G	A	34262522	2	1	566	1	0	0	0	0	0	0	0	1	10457	932	33	2		2	NFS1	20	34262522	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	13778434	34262522	28762998	148	49805										
DSN1	0	genome.wustl.edu	37	chr20	35395197	35395197	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gctctaaaactttcaagactGaagcccttagtgtcccttag	7	11	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	35395197	35395197	G	A	SNP	DSN1	ENST00000373745	human	ensembl	69_37n	-1	known	silent	c.477	p.F159	1.000	pfam_Mtw1_DSN1	pfam_Mtw1_DSN1	-	no_errors	DSN1	HGNC	ENSG00000149636	119	0	0	108	19	14.96	-	-	-	A	35395197	G	A	35395197	2	1	566	1	0	0	0	0	0	0	0	1	4815	1281	45	2		2	DSN1	20	35395197	Silent	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1132675	35395197	27630323	149	49806										
SPO11	0	genome.wustl.edu	37	chr20	55909851	55909851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ctggcaacttaagatacatcGaggaagatggcaccaaagtg	11	8	0	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	20	55909851	55909851	G	A	SNP	SPO11	ENST00000371263	human	ensembl	69_37n	1	known	missense	c.556	p.E186K	1.000	superfamily_Spo11/TopoVI_A	pfam_Meiosis_Spo11,pfam_Spo11/TopoVI_A_N,superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11,prints_Spo11/TopoVI_A,prints_TopoVI_A	-	no_errors	SPO11	HGNC	ENSG00000054796	200	0	0	341	56	14.11	-	-	-	A	55909851	G	A	55909851	3	1	566	1	0	0	0	0	1	0	0	0	15168	1059	37	1	578	1	SPO11	20	55909851	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	20514654	55909851	7115669	150	49807										
GRIK1	0	genome.wustl.edu	37	chr21	30909633	30909633	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aagatttccccttagttcttGactttttctttatttttttc	3	8	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	21	30909633	30909633	G	C	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	nonsense	c.2687	p.S896*	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	183	0	0	101	28	21.71	-	-	-	C	30909633	G	C	30909633	4	2	566	1	0	0	0	0	0	1	0	0	6824	1294	45	2	85	2	GRIK1	21	30909633	Nonsense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09		30909633	17220262	151	49808										
IL10RB	0	genome.wustl.edu	37	chr21	34668591	34668591	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgtcattgcagaagactctGagagcggcaagcagaatcct	12	9	2	4			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	21	34668591	34668591	G	C	SNP	IL10RB	ENST00000290200	human	ensembl	69_37n	1	known	missense	c.907	p.E303Q	0.001	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646	102	0	0	188	22	10.48	-	-	-	C	34668591	G	C	34668591	3	2	566	1	0	0	0	0	1	0	0	0	7675	1291	45	2	933	2	IL10RB	21	34668591	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	3758958	34668591	13461304	152	49809										
SON	0	genome.wustl.edu	37	chr21	34932323	34932323	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	attgcagagaacagtgttatCacatccctacccaacattgg	7	11	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	21	34932323	34932323	C	G	SNP	SON	ENST00000300278	human	ensembl	69_37n	1	known	missense	c.6798	p.I2266M	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	SON	HGNC	ENSG00000159140	98	0	0	177	39	17.97	-	-	-	G	34932323	C	G	34932323	3	3	566	1	0	0	0	0	1	0	0	0	15015	816	29	2	6824	2	SON	21	34932323	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	263732	34932323	13197572	153	49810										
PISD	0	genome.wustl.edu	37	chr22	32019790	32019790	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gcgggtctggacatgcagctCagctgccccagcctccgcct	12	17	2	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	22	32019790	32019790	C	T	SNP	PISD	ENST00000266095	human	ensembl	69_37n	-1	known	silent	c.99	p.L33	1.000	NULL	pfam_PS_Dcarbxylase,tigrfam_PS_decarb	-	no_errors	PISD	HGNC	ENSG00000241878	15	0	0	60	27	31.03	-	-	-	T	32019790	C	T	32019790	2	4	566	1	0	0	0	0	0	0	0	1	12020	813	29	2		2	PISD	22	32019790	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		32019790	19284776	154	49811										
TMEM27	0	genome.wustl.edu	37	chrX	15646168	15646168	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tcccttcatgtccaggggatCagaggggatgccattttcaa	11	10	3	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	15646168	15646168	C	T	SNP	TMEM27	ENST00000380342	human	ensembl	69_37n	-1	known	missense	c.595	p.D199N	0.581	NULL	NULL	-	no_errors	TMEM27	HGNC	ENSG00000147003	254	0	0	361	103	22.2	-	-	-	T	15646168	C	T	15646168	3	4	566	1	0	0	0	0	1	0	0	0	16247	826	29	2	77	2	TMEM27	23	15646168	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09		15646168	139624392	155	49812										
PDHA1	0	genome.wustl.edu	37	chrX	19373844	19373844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgcgtccgagaggcaacaaGgtttgctgctgcctattgta	13	9	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	19373844	19373844	G	A	SNP	PDHA1	ENST00000379806	human	ensembl	69_37n	1	known	missense	c.914	p.R305K	0.890	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828	109	0	0	280	47	14.37	-	-	-	A	19373844	G	A	19373844	3	1	566	1	0	0	0	0	1	0	0	0	11737	1000	35	4	969	4	PDHA1	23	19373844	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	3727676	19373844	135896716	156	49813										
UBA1	0	genome.wustl.edu	37	chrX	47058918	47058918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	acatcggtaaaaaccgggccGaggtatcacagccccgcctc	10	15	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	47058918	47058918	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.385	p.E129K	0.999	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	48	0	0	144	31	17.71	-	-	-	A	47058918	G	A	47058918	3	1	566	1	0	0	0	0	1	0	0	0	16924	1059	37	1	399	1	UBA1	23	47058918	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	27685074	47058918	108211642	157	49814										
WAS	0	genome.wustl.edu	37	chrX	48547760	48547760	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agccaccacctcagagctcaGagggactggtgggggccctg	15	13	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	48547760	48547760	G	C	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	missense	c.1390	p.E464Q	0.993	superfamily_WASP_C	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	11	0	0	52	24	31.58	-	-	-	C	48547760	G	C	48547760	3	2	566	1	0	0	0	0	1	0	0	0	17348	943	33	2	1432	2	WAS	23	48547760	Missense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	1488842	48547760	106722800	158	49815										
CACNA1F	0	genome.wustl.edu	37	chrX	49075818	49075818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	ggctcggatggggtcctcagCggccagggacacactgctga	16	12	1	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	49075818	49075818	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.2668	p.A890T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	35	0	0	133	76	36.36	-	-	-	T	49075818	C	T	49075818	3	4	566	1	0	0	0	0	1	0	0	0	2568	768	27	1	3377	1	CACNA1F	23	49075818	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	528058	49075818	106194742	159	49816										
NHSL2	0	genome.wustl.edu	37	chrX	71360031	71360031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agctgagaagcctccggtggCccggaggcctccaagcttgg	15	13	0	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	71360031	71360031	C	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.2633	p.A878V	1.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	53	0	0	83	23	21.7	-	-	-	T	71360031	C	T	71360031	3	4	566	1	0	0	0	0	1	0	0	0	10484	739	26	4	2655	4	NHSL2	23	71360031	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	22284213	71360031	83910529	160	49817										
TBX22	0	genome.wustl.edu	37	chrX	79277998	79277998	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	agcttactggttccgcatctCtccgcctggctcgcgtcccg	10	17	1	0			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	79277998	79277998	C	G	SNP	TBX22	ENST00000476373	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBX22	HGNC	ENSG00000122145	20	0	0	47	15	24.19	-	-	-	G	79277998	C	G	79277998	1	3	566	0	1	0	0	0	0	0	0	0	15753	928	32	2		2	TBX22	23	79277998	RNA	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	7917967	79277998	75992562	161	49818										
GPRASP1	0	genome.wustl.edu	37	chrX	101912816	101912816	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	gtgtcagaatttataggcctCtttaacagggaagagacaaa	10	6	2	2			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	101912816	101912816	C	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	silent	c.3975	p.L1325	0.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	103	0	0	92	18	16.36	-	-	-	T	101912816	C	T	101912816	2	4	566	1	0	0	0	0	0	0	0	1	6773	900	32	2		2	GPRASP1	23	101912816	Silent	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	22634818	101912816	53357744	162	49819										
NRK	0	genome.wustl.edu	37	chrX	105156652	105156652	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	tttcaaaggacaaagaagatGaatcatcagacaatgatgaa	8	5	3	6			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	105156652	105156652	G	T	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	nonsense	c.2257	p.E753*	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	83	0	0	80	18	18.37	-	-	-	T	105156652	G	T	105156652	4	4	566	1	0	0	0	0	0	1	0	0	10728	1291	45	2	2308	2	NRK	23	105156652	Nonsense_Mutation	SNP	G	TCGA-BH-A0W7-01A-11D-A10Y-09	3243836	105156652	50113908	163	49820										
ATG4A	0	genome.wustl.edu	37	chrX	107381127	107381127	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.658536585365854	108	1.84016580360373e-50	4.65963963044255	5.38625304136253	4.08743156934307	0.894927513579247	1	85	aaaccagagtaagggcacctCtgcctactgctcagcctgga	10	13	2	1			TCGA-BH-A0W7-01A-11D-A10Y-09	TCGA-BH-A0W7-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7d20774c-6aac-4eb0-a876-1be14e0f3004	38761409-51cc-4347-a0fe-3c259e3a1219	X	107381127	107381127	C	G	SNP	ATG4A	ENST00000372232	human	ensembl	69_37n	1	known	missense	c.641	p.S214C	0.309	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	77	0	0	119	33	21.71	-	-	-	G	107381127	C	G	107381127	3	3	566	1	0	0	0	0	1	0	0	0	1100	913	32	2	671	2	ATG4A	23	107381127	Missense_Mutation	SNP	C	TCGA-BH-A0W7-01A-11D-A10Y-09	2224475	107381127	47889433	164	49821										
SYT11	0	genome.wustl.edu	37	chr1	155850298	155850298	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tttttcctcacagaagtgcaTcagcagaggggagctccagg	12	10	2	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	1	155850298	155850298	T	A	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.869	p.I290N	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	123	0	0	44	67	60.36	-	-	-	A	155850298	T	A	155850298	3	1	567	1	0	0	0	0	1	0	0	0	15559	1435	50	5	879	5	SYT11	1	155850298	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09		155850298	93400323	1	49822										
RCOR3	0	genome.wustl.edu	37	chr1	211486914	211486914	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgccccggctcttcaccggcAgcctcctccactccagcagc	8	21	2	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	1	211486914	211486914	A	T	SNP	RCOR3	ENST00000419091	human	ensembl	69_37n	1	known	missense	c.1466	p.Q489L	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625	231	0	0	114	34	22.97	-	-	-	T	211486914	A	T	211486914	3	4	567	1	0	0	0	0	1	0	0	0	13267	188	7	5	1545	5	RCOR3	1	211486914	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09	55636616	211486914	37763707	2	49823										
USH2A	0	genome.wustl.edu	37	chr1	215847863	215847863	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgggtttcttggaggtttccAggtgatttctattgattctg	12	5	3	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	1	215847863	215847863	A	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13390	p.W4464R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	184	0	0	95	19	16.67	-	-	-	T	215847863	A	T	215847863	3	4	567	1	0	0	0	0	1	0	0	0	17133	188	7	5	2258	5	USH2A	1	215847863	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09	4360949	215847863	33402758	3	49824										
GCC2	0	genome.wustl.edu	37	chr2	109098250	109098253	+	Frame_Shift_Del	DEL	AATT	AATT	-													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tattgaagaccttacaagacAattaagaaattcgactttgc							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	AATT	AATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	109098250	109098253	AATT	-	DEL	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	frame_shift_del	c.3158_3161	p.L1054fs	0.998:0.956:0.954:0.990	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	65	0	0	37	28	43.08	-	-	-	-	109098253	AATT	-	109098250	7	5	567	1	0	1	0	1	0	0	0	0	6336	130	5	0	3196	0	GCC2	2	109098250	Frame_Shift_Del	DEL	AATT	TCGA-BH-A0WA-01A-11D-A10G-09		109098250	134101123	4	49825										
PCDP1	0	genome.wustl.edu	37	chr2	120362809	120362809	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	agacagatgaaggaggcactCtttgaacagaaagtcagaca	11	7	2	6			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	120362809	120362809	C	G	SNP	PCDP1	ENST00000413369	human	ensembl	69_37n	1	known	silent	c.1077	p.L359	0.879	NULL	NULL	-	no_errors	AC069154.2	Clone_based_vega_gene	ENSG00000163075	103	0	0	30	19	38.78	-	-	-	G	120362809	C	G	120362809	2	3	567	1	0	0	0	0	0	0	0	1	11645	900	32	2		2	PCDP1	2	120362809	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	11264559	120362809	122836564	5	49826										
LCT	0	genome.wustl.edu	37	chr2	136558268	136558268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgatggtgatggaaatcacgCcaccttgactggcgcggtac	13	10	1	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	136558268	136558268	C	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.4775	p.G1592V	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	97	0	0	45	25	35.71	-	-	-	A	136558268	C	A	136558268	3	1	567	1	0	0	0	0	1	0	0	0	8747	739	26	4	1032	4	LCT	2	136558268	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	16195459	136558268	106641105	6	49827										
ZNF804A	0	genome.wustl.edu	37	chr2	185803357	185803357	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gctgccctcccaccccctagCacacctctgcagcctttgcc	6	22	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	185803357	185803357	C	T	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	silent	c.3234	p.S1078	0.809	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	149	0	0	92	50	35.21	-	-	-	T	185803357	C	T	185803357	2	4	567	1	0	0	0	0	0	0	0	1	18263	709	25	4		4	ZNF804A	2	185803357	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	49245089	185803357	57396016	7	49828										
CCDC150	0	genome.wustl.edu	37	chr2	197565833	197565833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gcctttgtttgccttatcagCttgcccaacagaaggtggaa	10	10	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	197565833	197565833	C	G	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.1624	p.L542V	0.708	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	195	0	0	79	40	33.61	-	-	-	G	197565833	C	G	197565833	3	3	567	1	0	0	0	0	1	0	0	0	2810	811	28	4	1682	4	CCDC150	2	197565833	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	11762476	197565833	45633540	8	49829										
ALPP	0	genome.wustl.edu	37	chr2	233244985	233244985	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tacagccaaggtgggaccagGctggacgggaagaatctggt	16	8	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	233244985	233244985	G	C	SNP	ALPP	ENST00000392027	human	ensembl	69_37n	1	known	missense	c.747	p.R249S	0.005	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283	101	0	0	68	12	15	-	-	-	C	233244985	G	C	233244985	3	2	567	1	0	0	0	0	1	0	0	0	548	1194	42	4	769	4	ALPP	2	233244985	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	35679152	233244985	9954388	9	49830										
ALPPL2	0	genome.wustl.edu	37	chr2	233273066	233273066	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tacagccaaggtgggaccagGctggacgggaagaatctggt	16	8	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	233273066	233273066	G	C	SNP	ALPPL2	ENST00000295453	human	ensembl	69_37n	1	known	missense	c.738	p.R246S	0.019	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286	96	0	0	17	29	63.04	-	-	-	C	233273066	G	C	233273066	3	2	567	1	0	0	0	0	1	0	0	0	549	1194	42	4	760	4	ALPPL2	2	233273066	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	28081	233273066	9926307	10	49831										
AGAP1	0	genome.wustl.edu	37	chr2	236877203	236877203	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tcccctcacgccaacagaaaGaagcaccgaaggaagaaaag	9	12	1	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	2	236877203	236877203	G	T	SNP	AGAP1	ENST00000418654	human	ensembl	69_37n	1	novel	nonsense	c.163	p.E55*	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AGAP1	HGNC	ENSG00000157985	70	0	0	10	26	70.27	-	-	-	T	236877203	G	T	236877203	4	4	567	1	0	0	0	0	0	1	0	0	366	933	33	2	1631	2	AGAP1	2	236877203	Nonsense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	3604137	236877203	6322170	11	49832										
CRELD1	0	genome.wustl.edu	37	chr3	9976594	9976594	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	aagagaatttgtccaaatacAaagacaggtaaggggctgct	11	6	0	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	9976594	9976594	A	C	SNP	CRELD1	ENST00000326434	human	ensembl	69_37n	1	known	missense	c.250	p.K84Q	1.000	pfam_DUF3456	pfam_DUF3456,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_Furin_repeat,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703	164	0	0	41	46	52.87	-	-	-	C	9976594	A	C	9976594	3	2	567	1	0	0	0	0	1	0	0	0	3896	131	5	5	256	5	CRELD1	3	9976594	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		9976594	188045836	12	49833										
ZNF619	0	genome.wustl.edu	37	chr3	40528623	40528623	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	aggtgttttataaatgtggtGagtgtggcagttactacaac	12	4	0	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	40528623	40528623	G	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	nonsense	c.742	p.E248*	0.079	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	53	0	0	37	12	24.49	-	-	-	T	40528623	G	T	40528623	4	4	567	1	0	0	0	0	0	1	0	0	18139	1291	45	2	782	2	ZNF619	3	40528623	Nonsense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	30552029	40528623	157493807	13	49834										
LMOD3	0	genome.wustl.edu	37	chr3	69167916	69167916	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgatctctgggagtgatttcCaccaatgggggtggcctgtt	14	8	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	69167916	69167916	C	G	SNP	LMOD3	ENST00000420581	human	ensembl	69_37n	-1	known	silent	c.1590	p.V530	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380	194	0	0	87	48	35.56	-	-	-	G	69167916	C	G	69167916	2	3	567	1	0	0	0	0	0	0	0	1	8914	581	21	4		4	LMOD3	3	69167916	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	28639293	69167916	128854514	14	49835										
GPR156	0	genome.wustl.edu	37	chr3	119886036	119886036	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	agctctggaagcagatttcaCagtagggccggtggcagcgg	16	9	2	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	119886036	119886036	C	G	SNP	GPR156	ENST00000315843	human	ensembl	69_37n	-1	known	missense	c.2288	p.C763S	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	72	0	0	41	18	30.51	-	-	-	G	119886036	C	G	119886036	3	3	567	1	0	0	0	0	1	0	0	0	6711	478	17	4	160	4	GPR156	3	119886036	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	50718120	119886036	78136394	15	49836										
CCDC37	0	genome.wustl.edu	37	chr3	126139043	126139043	+	Silent	SNP	C	C	A													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ccccagcaaggcagccagccCagcgagtccagcggtggcga							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	126139043	126139043	C	A	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	silent	c.1056	p.P352	0.000	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	22	0	0	13	4	23.53	-	-	-	A	126139043	C	A	126139043	2	1	567	1	0	0	0	0	0	0	0	1	2835	581	21	4		4	CCDC37	3	126139043	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	6253007	126139043	71883387	16	49837	419	2								
CCDC37	0	genome.wustl.edu	37	chr3	126139044	126139044	+	Missense_Mutation	SNP	A	A	G													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cccagcaaggcagccagcccAgcgagtccagcggtggcgac							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	126139044	126139044	A	G	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	missense	c.1057	p.S353G	0.006	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	21	0	0	12	4	25	-	-	-	G	126139044	A	G	126139044	3	3	567	1	0	0	0	0	1	0	0	0	2835	188	7	5	1092	5	CCDC37	3	126139044	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09	1	126139044	71883386	17	49838	419	2								
STAG1	0	genome.wustl.edu	37	chr3	136096565	136096565	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	caaacagccaaaaaggatttCaccgttttcctcaataccaa	4	12	2	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	136096565	136096565	C	T	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	silent	c.2307	p.V769	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	134	0	0	103	25	19.53	-	-	-	T	136096565	C	T	136096565	2	4	567	1	0	0	0	0	0	0	0	1	15333	813	29	2		2	STAG1	3	136096565	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	9957521	136096565	61925865	18	49839										
LXN	0	genome.wustl.edu	37	chr3	158387342	158387342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgtgaagttgacttctggtgCagtttcttgtcccgttgaag	12	7	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	3	158387342	158387342	C	T	SNP	LXN	ENST00000264265	human	ensembl	69_37n	-1	known	missense	c.250	p.A84T	1.000	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	-	no_errors	LXN	HGNC	ENSG00000079257	256	0	0	218	59	21.3	-	-	-	T	158387342	C	T	158387342	3	4	567	1	0	0	0	0	1	0	0	0	9156	710	25	4	434	4	LXN	3	158387342	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	22290777	158387342	39635088	19	49840										
TADA2B	0	genome.wustl.edu	37	chr4	7055893	7055893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ctggggaaggcctgcatcccCgacaccatccccaaccgcgt	10	18	0	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	4	7055893	7055893	C	T	SNP	TADA2B	ENST00000310074	human	ensembl	69_37n	1	known	silent	c.375	p.P125	0.115	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011	59	0	0	9	13	56.52	-	-	-	T	7055893	C	T	7055893	2	4	567	1	0	0	0	0	0	0	0	1	15603	639	23	1		1	TADA2B	4	7055893	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09		7055893	184098383	20	49841										
LPHN3	0	genome.wustl.edu	37	chr4	62778445	62778445	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	taatggattcagcttcagaaAagagagcgctcttgcagagc	11	8	3	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	4	62778445	62778445	A	T	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.2082	p.K694N	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	355	0	0	66	97	59.51	-	-	-	T	62778445	A	T	62778445	3	4	567	1	0	0	0	0	1	0	0	0	8983	11	1	5	1916	5	LPHN3	4	62778445	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09	55722552	62778445	128375831	21	49842										
TAS2R1	0	genome.wustl.edu	37	chr5	9629727	9629727	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tttgctatggaaaacacaaaTcatagatacatatagcagag	7	6	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	5	9629727	9629727	T	G	SNP	TAS2R1	ENST00000382492	human	ensembl	69_37n	-1	known	missense	c.418	p.I140L	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R1	HGNC	ENSG00000169777	38	0	0	70	14	16.67	-	-	-	G	9629727	T	G	9629727	3	3	567	1	0	0	0	0	1	0	0	0	15657	1435	50	5	485	5	TAS2R1	5	9629727	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09		9629727	171285533	22	49843										
IL6ST	0	genome.wustl.edu	37	chr5	55256367	55256367	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cagtgaatgaagatcgggtgGatgctgtgtcttcaggagga	16	5	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	5	55256367	55256367	G	C	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.836	p.S279C	0.763	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	202	0	0	73	31	29.52	-	-	-	C	55256367	G	C	55256367	3	2	567	1	0	0	0	0	1	0	0	0	7757	1174	41	2	1960	2	IL6ST	5	55256367	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	45626640	55256367	125658893	23	49844										
FAM71B	0	genome.wustl.edu	37	chr5	156590215	156590215	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ccatcgaggtggaagtacctTccaaggaggtgcttgcagca	13	10	0	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	5	156590215	156590215	T	C	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.1061	p.E354G	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	59	0	0	31	16	34.04	-	-	-	C	156590215	T	C	156590215	3	2	567	1	0	0	0	0	1	0	0	0	5653	1783	62	5	760	5	FAM71B	5	156590215	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	101333848	156590215	24325045	24	49845										
GCM2	0	genome.wustl.edu	37	chr6	10874470	10874470	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cggaggaccccagggttctgGatagacagacatcccagtat	12	11	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	6	10874470	10874470	G	C	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	missense	c.1279	p.P427A	0.398	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	100	0	0	68	54	43.9	-	-	-	C	10874470	G	C	10874470	3	2	567	1	0	0	0	0	1	0	0	0	6348	1174	41	2	245	2	GCM2	6	10874470	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		10874470	160240597	25	49846										
ZNF318	0	genome.wustl.edu	37	chr6	43316157	43316157	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgtaggctctctactgtcacTtaaagacttctgggatttat	8	8	3	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	6	43316157	43316157	T	A	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.2977	p.S993C	0.963	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	355	0	0	195	171	46.72	-	-	-	A	43316157	T	A	43316157	3	1	567	1	0	0	0	0	1	0	0	0	17932	1609	56	5	3882	5	ZNF318	6	43316157	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	32441687	43316157	127798910	26	49847										
PKHD1	0	genome.wustl.edu	37	chr6	51483961	51483961	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cgcaggaggctttcttctctTgggaaagccccaagctgcca	11	13	2	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	6	51483961	51483961	T	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.12143	p.Q4048P	0.998	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	49	0	0	58	12	17.14	-	-	-	G	51483961	T	G	51483961	3	3	567	1	0	0	0	0	1	0	0	0	12045	1812	63	5	85	5	PKHD1	6	51483961	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	8167804	51483961	119631106	27	49848										
CYP2W1	0	genome.wustl.edu	37	chr7	1024915	1024915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgtttgtgtccctgctgggtCtcatcgatgaggtcatggtc	13	9	2	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	7	1024915	1024915	C	G	SNP	CYP2W1	ENST00000308919	human	ensembl	69_37n	1	known	missense	c.601	p.L201V	0.515	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2W1	HGNC	ENSG00000073067	62	0	0	35	9	20	-	-	-	G	1024915	C	G	1024915	3	3	567	1	0	0	0	0	1	0	0	0	4207	913	32	2	615	2	CYP2W1	7	1024915	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09		1024915	158113748	28	49849										
NXPH1	0	genome.wustl.edu	37	chr7	8791150	8791150	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gtgattgatgccaaagattcCaagtcttttaattgtcgcat	8	7	1	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	7	8791150	8791150	C	T	SNP	NXPH1	ENST00000405863	human	ensembl	69_37n	1	known	silent	c.567	p.S189	1.000	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH1	HGNC	ENSG00000122584	81	0	0	50	17	25.37	-	-	-	T	8791150	C	T	8791150	2	4	567	1	0	0	0	0	0	0	0	1	10863	581	21	4		4	NXPH1	7	8791150	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	7766235	8791150	150347513	29	49850										
ABCB5	0	genome.wustl.edu	37	chr7	20691242	20691242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgattttatcatggagtttcCtaatgtgagtacactgtgca	9	6	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	7	20691242	20691242	C	G	SNP	ABCB5	ENST00000258738	human	ensembl	69_37n	1	known	missense	c.197	p.P66R	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	202	0	0	110	26	19.12	-	-	-	G	20691242	C	G	20691242	3	3	567	1	0	0	0	0	1	0	0	0	44	681	24	4	1578	4	ABCB5	7	20691242	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	11900092	20691242	138447421	30	49851										
LIMK1	0	genome.wustl.edu	37	chr7	73530288	73530288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tggcacctgagatgatcaacGgtgagtggttcagccctgcc	13	11	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	7	73530288	73530288	G	A	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	missense	c.1567	p.G523S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	56	0	0	24	13	35.14	-	-	-	A	73530288	G	A	73530288	3	1	567	1	0	0	0	0	1	0	0	0	8856	1130	39	1	1617	1	LIMK1	7	73530288	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	52839046	73530288	85608375	31	49852										
PXDNL	0	genome.wustl.edu	37	chr8	52339306	52339306	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tatcctgaggaagttgagtaAacactgcaagagctgtggaa	12	6	0	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	8	52339306	52339306	A	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1538	p.F513Y	0.554	pfam_Ig_I-set,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	188	0	0	168	56	25	-	-	-	T	52339306	A	T	52339306	3	4	567	1	0	0	0	0	1	0	0	0	12931	14	1	5	2897	5	PXDNL	8	52339306	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		52339306	94024716	32	49853										
CHD7	0	genome.wustl.edu	37	chr8	61765545	61765545	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgccagccaagcttggatctGccagagtggtgggagtgtgg	17	8	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	8	61765545	61765545	G	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	silent	c.6261	p.L2087	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	148	0	0	89	13	12.75	-	-	-	C	61765545	G	C	61765545	2	2	567	1	0	0	0	0	0	0	0	1	3359	1306	46	4		4	CHD7	8	61765545	Silent	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	9426239	61765545	84598477	33	49854										
LYNX1	0	genome.wustl.edu	37	chr8	143856611	143856611	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gagaccccagagggtggccaGgaggatgggggccagggcca	20	10	0	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	8	143856611	143856611	G	A	SNP	LYNX1	ENST00000345173	human	ensembl	69_37n	-1	known	silent	c.325	p.L109	0.349	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYNX1	HGNC	ENSG00000180155	53	0	0	24	16	40	-	-	-	A	143856611	G	A	143856611	2	1	567	1	0	0	0	0	0	0	0	1	9175	991	35	4		4	LYNX1	8	143856611	Silent	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	82091066	143856611	2507411	34	49855										
KIAA2026	0	genome.wustl.edu	37	chr9	5920327	5920327	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	accgggttccgttaatcataAtctgagtaccaggtgccaaa	9	10	2	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	9	5920327	5920327	A	T	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.5669	p.I1890N	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	146	0	0	116	21	15.33	-	-	-	T	5920327	A	T	5920327	3	4	567	1	0	0	0	0	1	0	0	0	8322	101	4	5	646	5	KIAA2026	9	5920327	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		5920327	135293104	35	49856										
RAD23B	0	genome.wustl.edu	37	chr9	110086219	110086219	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gcctcagtttcaacagatgaGacaaattattcagcagaatc	7	9	3	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	9	110086219	110086219	G	A	SNP	RAD23B	ENST00000358015	human	ensembl	69_37n	1	known	missense	c.866	p.R289K	1.000	pfam_XPC-bd,superfamily_XPC-bd,smart_STI1_HS-bd,tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318	267	0	0	96	53	35.57	-	-	-	A	110086219	G	A	110086219	3	1	567	1	0	0	0	0	1	0	0	0	13066	942	33	2	896	2	RAD23B	9	110086219	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	104165892	110086219	31127212	36	49857										
COL27A1	0	genome.wustl.edu	37	chr9	117027349	117027349	+	Missense_Mutation	SNP	G	G	T													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cccacatgtgcttccagggtGtggctggtgagcgaggccac							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	9	117027349	117027349	G	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.3298	p.V1100L	0.007	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	163	0	0	51	17	25	-	-	-	T	117027349	G	T	117027349	3	4	567	1	0	0	0	0	1	0	0	0	3715	1377	48	4	3420	4	COL27A1	9	117027349	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	6941130	117027349	24186082	37	49858	420	2								
COL27A1	0	genome.wustl.edu	37	chr9	117027350	117027350	+	Missense_Mutation	SNP	T	T	G													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ccacatgtgcttccagggtgTggctggtgagcgaggccact							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	9	117027350	117027350	T	G	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.3299	p.V1100G	0.007	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	164	0	0	51	18	26.09	-	-	-	G	117027350	T	G	117027350	3	3	567	1	0	0	0	0	1	0	0	0	3715	1696	59	5	3421	5	COL27A1	9	117027350	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	1	117027350	24186081	38	49859	420	2								
WDR37	0	genome.wustl.edu	37	chr10	1123883	1123883	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cctcggttcgcagtacacttCtggaactgtttggtcaaata	9	10	2	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	1123883	1123883	C	T	SNP	WDR37	ENST00000263150	human	ensembl	69_37n	1	known	silent	c.175	p.L59	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	167	0	0	103	50	32.26	-	-	-	T	1123883	C	T	1123883	2	4	567	1	0	0	0	0	0	0	0	1	17388	912	32	2		2	WDR37	10	1123883	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09		1123883	134410864	39	49860										
NET1	0	genome.wustl.edu	37	chr10	5493833	5493833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tcgacctctggctcgtgtcaCgtccttggcaaatttaatct	8	12	3	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	5493833	5493833	C	T	SNP	NET1	ENST00000355029	human	ensembl	69_37n	1	known	missense	c.296	p.T99M	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	NET1	HGNC	ENSG00000173848	226	0	0	170	30	15	-	-	-	T	5493833	C	T	5493833	3	4	567	1	0	0	0	0	1	0	0	0	10410	536	19	1	407	1	NET1	10	5493833	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	4369950	5493833	130040914	40	49861										
DDX50	0	genome.wustl.edu	37	chr10	70706250	70706250	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	atcaggccggtcaggccggtCaggtggtcgatctggcggcc	17	12	4	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	70706250	70706250	C	T	SNP	DDX50	ENST00000373585	human	ensembl	69_37n	1	known	missense	c.2078	p.S693L	0.991	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	70	0	0	26	5	16.13	-	-	-	T	70706250	C	T	70706250	3	4	567	1	0	0	0	0	1	0	0	0	4399	838	29	2	2136	2	DDX50	10	70706250	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	65212417	70706250	64828497	41	49862										
FBXW4	0	genome.wustl.edu	37	chr10	103432723	103432724	+	Frame_Shift_Del	DEL	CA	CA	-													0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	atgatgccccctttgcaatcCacacagttcacctcctgttc							TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	103432723	103432724	CA	-	DEL	FBXW4	ENST00000331272	human	ensembl	69_37n	-1	known	frame_shift_del	c.624_623	p.V208fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829	362	0	0	141	26	15.57	-	-	-	-	103432724	CA	-	103432723	7	5	567	1	0	1	0	1	0	0	0	0	5813	581	21	0	638	0	FBXW4	10	103432723	Frame_Shift_Del	DEL	CA	TCGA-BH-A0WA-01A-11D-A10G-09	32726473	103432723	32102024	42	49863										
ELOVL3	0	genome.wustl.edu	37	chr10	103988761	103988761	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	acacctactacactctgaagGctgccaacgtgaagcccccc	7	17	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	103988761	103988761	G	C	SNP	ELOVL3	ENST00000370005	human	ensembl	69_37n	1	known	missense	c.565	p.A189P	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL3	HGNC	ENSG00000119915	140	0	0	57	22	27.85	-	-	-	C	103988761	G	C	103988761	3	2	567	1	0	0	0	0	1	0	0	0	5112	1203	42	4	579	4	ELOVL3	10	103988761	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	556038	103988761	31545986	43	49864										
HSPA12A	0	genome.wustl.edu	37	chr10	118439170	118439170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tcattaagtcaacccaggctGcagggcgtttgattttgaat	10	8	2	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	10	118439170	118439170	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	missense	c.1130	p.A377V	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	135	0	0	97	30	23.62	-	-	-	A	118439170	G	A	118439170	3	1	567	1	0	0	0	0	1	0	0	0	7457	1319	46	4	909	4	HSPA12A	10	118439170	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	14450409	118439170	17095577	44	49865										
TNNT3	0	genome.wustl.edu	37	chr11	1950349	1950349	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gtgccttttgccacctggaaGacaccgcagaggaggacgcg	14	12	0	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	11	1950349	1950349	G	A	SNP	TNNT3	ENST00000397301	human	ensembl	69_37n	1	known	splice_site	c.116-1	e8-1	0.002	-	-	-	no_errors	TNNT3	HGNC	ENSG00000130595	70	0	0	26	8	23.53	-	-	-	A	1950349	G	A	1950349	5	1	567	1	0	0	0	0	0	0	1	0	16427	956	33	2	145	2	TNNT3	11	1950349	Splice_Site	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		1950349	133056167	45	49866										
SAAL1	0	genome.wustl.edu	37	chr11	18124894	18124894	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gtgttttcagggctaacaatCttcagaaacacaaagaaaga	8	7	3	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	11	18124894	18124894	C	T	SNP	SAAL1	ENST00000524803	human	ensembl	69_37n	-1	known	splice_site	c.136-1	e2-1	0.997	-	-	-	no_errors	SAAL1	HGNC	ENSG00000166788	172	0	0	70	68	49.28	-	-	-	T	18124894	C	T	18124894	5	4	567	1	0	0	0	0	0	0	1	0	13887	927	32	2	1333	2	SAAL1	11	18124894	Splice_Site	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	16174545	18124894	116881622	46	49867										
AMBRA1	0	genome.wustl.edu	37	chr11	46563919	46563919	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gttctcactgctgtgtggggTgggctggtgggaagggcctg	20	7	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	11	46563919	46563919	T	G	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.1648	p.T550P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	80	0	0	35	17	32.69	-	-	-	G	46563919	T	G	46563919	3	3	567	1	0	0	0	0	1	0	0	0	565	1696	59	5	2296	5	AMBRA1	11	46563919	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	28439025	46563919	88442597	47	49868										
NDUFV1	0	genome.wustl.edu	37	chr11	67377047	67377047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tggggggccgggccatgggcGcccgcgctgcctatatctac	16	14	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	11	67377047	67377047	G	A	SNP	NDUFV1	ENST00000322776	human	ensembl	69_37n	1	known	missense	c.451	p.A151T	0.999	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	30	0	0	25	9	26.47	-	-	-	A	67377047	G	A	67377047	3	1	567	1	0	0	0	0	1	0	0	0	10371	1087	38	1	465	1	NDUFV1	11	67377047	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	20813128	67377047	67629469	48	49869										
FAT3	0	genome.wustl.edu	37	chr11	92532859	92532859	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tatcattatcgatggggaccCttttaaacagtttaacattg	7	7	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	11	92532859	92532859	C	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.6680	p.P2227R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	91	0	0	28	40	58.82	-	-	-	G	92532859	C	G	92532859	3	3	567	1	0	0	0	0	1	0	0	0	5737	681	24	4	6714	4	FAT3	11	92532859	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	25155812	92532859	42473657	49	49870										
ETNK1	0	genome.wustl.edu	37	chr12	22797179	22797179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ctctttgcaaaggaaaaactAcaagatgttttggattaacc	7	7	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	12	22797179	22797179	A	G	SNP	ETNK1	ENST00000335148	human	ensembl	69_37n	1	known	missense	c.718	p.T240A	0.000	NULL	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	-	no_errors	ETNK1	HGNC	ENSG00000139163	252	0	0	449	88	16.39	-	-	-	G	22797179	A	G	22797179	3	3	567	1	0	0	0	0	1	0	0	0	5310	391	14	5	728	5	ETNK1	12	22797179	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		22797179	111054716	50	49871										
NAV3	0	genome.wustl.edu	37	chr12	78513062	78513062	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgagaaaggaaaagctccccTaaaaggatcatctctacaaa	7	9	2	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	12	78513062	78513062	T	A	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.3086	p.L1029Q	0.880	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	82	0	0	33	36	52.17	-	-	-	A	78513062	T	A	78513062	3	1	567	1	0	0	0	0	1	0	0	0	10257	1522	53	5	3144	5	NAV3	12	78513062	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	55715883	78513062	55338833	51	49872										
PWP1	0	genome.wustl.edu	37	chr12	108086667	108086667	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	caagatccttacgttactctGaaagatacagtaagtattta	6	7	1	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	12	108086667	108086667	G	A	SNP	PWP1	ENST00000412830	human	ensembl	69_37n	1	known	silent	c.396	p.L132	0.984	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045	294	0	0	188	48	20.17	-	-	-	A	108086667	G	A	108086667	2	1	567	1	0	0	0	0	0	0	0	1	12926	1277	45	2		2	PWP1	12	108086667	Silent	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	29573605	108086667	25765228	52	49873										
MSI1	0	genome.wustl.edu	37	chr12	120791150	120791150	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gaggcctgtataactccggcTggcgtaggttgtggcttgga	16	8	0	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	12	120791150	120791150	T	G	SNP	MSI1	ENST00000257552	human	ensembl	69_37n	-1	known	missense	c.685	p.S229R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097	122	0	0	28	32	53.33	-	-	-	G	120791150	T	G	120791150	3	3	567	1	0	0	0	0	1	0	0	0	9947	1580	55	5	423	5	MSI1	12	120791150	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	12704483	120791150	13060745	53	49874										
WDHD1	0	genome.wustl.edu	37	chr14	55408276	55408276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	atctaaaggtttctgcttttTagacaaattcaggttctctt	6	7	4	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	14	55408276	55408276	T	G	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	missense	c.3322	p.K1108Q	0.987	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	562	0	0	114	171	60	-	-	-	G	55408276	T	G	55408276	3	3	567	1	0	0	0	0	1	0	0	0	17368	1763	61	5	71	5	WDHD1	14	55408276	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09		55408276	51941264	54	49875										
GSTZ1	0	genome.wustl.edu	37	chr14	77793827	77793827	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ctccacagttttctaaggacTtccaggcactgaatcctatg	7	12	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	14	77793827	77793827	T	A	SNP	GSTZ1	ENST00000216465	human	ensembl	69_37n	1	known	missense	c.148	p.F50I	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold,tigrfam_Mal_ac_isom	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,tigrfam_Mal_ac_isom	-	no_errors	GSTZ1	HGNC	ENSG00000100577	65	0	0	8	17	68	-	-	-	A	77793827	T	A	77793827	3	1	567	1	0	0	0	0	1	0	0	0	6899	1609	56	5	162	5	GSTZ1	14	77793827	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	22385551	77793827	29555713	55	49876										
UBR7	0	genome.wustl.edu	37	chr14	93686633	93686633	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gatgtcttattcctgacagaTgaatacgacacagttctggc	9	9	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	14	93686633	93686633	T	C	SNP	UBR7	ENST00000555329	human	ensembl	69_37n	1	novel	nonstop	c.94	p.*32R	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBR7	HGNC	ENSG00000012963	62	0	0	20	19	48.72	-	-	-	C	93686633	T	C	93686633	4	2	567	1	0	0	0	0	0	0	0	0	17003	1461	51	5	1033	5	UBR7	14	93686633	Nonstop_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	15892806	93686633	13662907	56	49877										
C15orf55	0	genome.wustl.edu	37	chr15	34647278	34647278	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ctgctgtccccagaaaaacaGagagatcccttggccttaat	8	12	0	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	15	34647278	34647278	G	A	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	silent	c.1335	p.Q445	0.330	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	149	0	0	36	31	46.27	-	-	-	A	34647278	G	A	34647278	2	1	567	1	0	0	0	0	0	0	0	1	1815	933	33	2		2	C15orf55	15	34647278	Silent	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		34647278	67884114	57	49878										
SPG11	0	genome.wustl.edu	37	chr15	44944117	44944117	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ttattgtttcattcaatgatGatagctgggctttccaagac	8	7	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	15	44944117	44944117	G	A	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	missense	c.1028	p.S343L	0.004	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	50	0	0	23	14	37.84	-	-	-	A	44944117	G	A	44944117	3	1	567	1	0	0	0	0	1	0	0	0	15132	1294	45	2	6443	2	SPG11	15	44944117	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	10296839	44944117	57587275	58	49879										
EDC3	0	genome.wustl.edu	37	chr15	74948230	74948230	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tctcctttcataggtatcaaTctcctcaaacacagctgcct	4	14	5	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	15	74948230	74948230	T	C	SNP	EDC3	ENST00000315127	human	ensembl	69_37n	-1	known	missense	c.664	p.I222V	1.000	pfam_FDF_dom	pfam_YjeF_N,pfam_FDF_dom,superfamily_YjeF_N	-	no_errors	EDC3	HGNC	ENSG00000179151	228	0	0	100	99	49.75	-	-	-	C	74948230	T	C	74948230	3	2	567	1	0	0	0	0	1	0	0	0	4942	1435	50	5	878	5	EDC3	15	74948230	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	30004113	74948230	27583162	59	49880										
AXIN1	0	genome.wustl.edu	37	chr16	396580	396580	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cgatgccattgttatcaagaAtgtactttcggtagatggct	10	7	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	16	396580	396580	A	G	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	missense	c.446	p.I149T	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	142	0	0	24	47	66.2	-	-	-	G	396580	A	G	396580	3	3	567	1	0	0	0	0	1	0	0	0	1240	101	4	5	2182	5	AXIN1	16	396580	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		396580	89958173	60	49881										
GSPT1	0	genome.wustl.edu	37	chr16	12009404	12009404	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	aaggccgcgctgaggttctcCcgctgggcctcggccgccgc	15	17	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	16	12009404	12009404	C	T	SNP	GSPT1	ENST00000434724	human	ensembl	69_37n	-1	known	silent	c.174	p.R58	0.807	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT1	HGNC	ENSG00000103342	10	0	0	6	7	53.85	-	-	-	T	12009404	C	T	12009404	2	4	567	1	0	0	0	0	0	0	0	1	6877	610	22	4		4	GSPT1	16	12009404	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	11612824	12009404	78345349	61	49882										
TP53	0	genome.wustl.edu	37	chr17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ggttcatgccgcccatgcagGaactgttacacatgtagttg	11	10	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	17	7577559	7577559	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.722	p.S241C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	105	0	0	18	25	58.14	-	-	-	C	7577559	G	C	7577559	3	2	567	1	0	0	0	0	1	0	0	0	16477	1174	41	2	568	2	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		7577559	73617651	62	49883										
BRCA1	0	genome.wustl.edu	37	chr17	41223256	41223256	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ttccaggtaaggggttccctCtgaaaggaatgggagaagtt	14	6	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	17	41223256	41223256	C	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	splice_site	c.4739-1	e15-1	1.000	-	-	-	no_errors	BRCA1	HGNC	ENSG00000012048	30	0	0	9	10	52.63	-	-	-	T	41223256	C	T	41223256	5	4	567	1	0	0	0	0	0	0	1	0	1506	927	32	2	952	2	BRCA1	17	41223256	Splice_Site	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	33645697	41223256	39971954	63	49884										
ADAM11	0	genome.wustl.edu	37	chr17	42856604	42856604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ctgcagaaacattcgccgagGaaggtacgacccgacccagc	11	14	0	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	17	42856604	42856604	G	A	SNP	ADAM11	ENST00000200557	human	ensembl	69_37n	1	known	missense	c.2291	p.G764E	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670	134	0	0	43	15	25.86	-	-	-	A	42856604	G	A	42856604	3	1	567	1	0	0	0	0	1	0	0	0	235	1174	41	2	2393	2	ADAM11	17	42856604	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	1633348	42856604	38338606	64	49885										
ESCO1	0	genome.wustl.edu	37	chr18	19153877	19153877	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgactcaatttcaccagcaaTttcttcacagagctggagaa	7	10	4	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	18	19153877	19153877	T	C	SNP	ESCO1	ENST00000269214	human	ensembl	69_37n	-1	known	missense	c.928	p.I310V	1.000	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446	156	0	0	110	65	37.14	-	-	-	C	19153877	T	C	19153877	3	2	567	1	0	0	0	0	1	0	0	0	5285	1493	52	5	1630	5	ESCO1	18	19153877	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09		19153877	58923371	65	49886										
ASXL3	0	genome.wustl.edu	37	chr18	31319718	31319718	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	agccactctccccgcagaaaGatgagtcttccgccactgcc	8	17	2	3			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	18	31319718	31319718	G	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.2350	p.D784Y	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	56	0	0	62	11	15.07	-	-	-	T	31319718	G	T	31319718	3	4	567	1	0	0	0	0	1	0	0	0	1072	942	33	2	2392	2	ASXL3	18	31319718	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	12165841	31319718	46757530	66	49887										
ARHGEF1	0	genome.wustl.edu	37	chr19	42396123	42396123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gtctgcatgccgacatgctgGgctcactgggccccaaggag	14	13	2	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	19	42396123	42396123	G	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	1	known	missense	c.298	p.G100C	0.011	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	40	0	0	19	12	38.71	-	-	-	T	42396123	G	T	42396123	3	4	567	1	0	0	0	0	1	0	0	0	895	1232	43	4	316	4	ARHGEF1	19	42396123	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		42396123	16732860	67	49888										
LYPD5	0	genome.wustl.edu	37	chr19	44303921	44303921	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ggagatgctgggcagcttcaTggccctgaggtcaaaggggc	17	9	2	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	19	44303921	44303921	T	G	SNP	LYPD5	ENST00000377950	human	ensembl	69_37n	-1	known	missense	c.130	p.M44L	0.000	NULL	pfam_LY6_UPAR	-	no_errors	LYPD5	HGNC	ENSG00000159871	98	0	0	42	12	22.22	-	-	-	G	44303921	T	G	44303921	3	3	567	1	0	0	0	0	1	0	0	0	9180	1464	51	5	641	5	LYPD5	19	44303921	Missense_Mutation	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	1907798	44303921	14825062	68	49889										
TRPM4	0	genome.wustl.edu	37	chr19	49692303	49692303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gccacttgcctccagctggcCatgcaagctgacgcccgtgc	11	17	0	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	19	49692303	49692303	C	A	SNP	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	silent	c.1974	p.A658	0.751	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	41	0	0	15	8	33.33	-	-	-	A	49692303	C	A	49692303	2	1	567	1	0	0	0	0	0	0	0	1	16684	581	21	4		4	TRPM4	19	49692303	Silent	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	5388382	49692303	9436680	69	49890										
WISP2	0	genome.wustl.edu	37	chr20	43348649	43348649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gctgctgccgggtatgtgcaCggcggctgggggagccctgc	19	12	0	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	20	43348649	43348649	C	T	SNP	WISP2	ENST00000190983	human	ensembl	69_37n	1	known	missense	c.172	p.R58W	0.987	pfam_IGFBP-like,smart_IGFBP-like	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205	41	0	0	11	13	54.17	-	-	-	T	43348649	C	T	43348649	3	4	567	1	0	0	0	0	1	0	0	0	17470	527	19	1	178	1	WISP2	20	43348649	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09		43348649	19676871	70	49891										
NCOA3	0	genome.wustl.edu	37	chr20	46264187	46264187	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	caaaccaaggcttacagatgCcgagcagcagggcctatggc	12	12	0	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	20	46264187	46264187	C	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.1234	p.P412A	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	49	0	0	35	5	12.5	-	-	-	G	46264187	C	G	46264187	3	3	567	1	0	0	0	0	1	0	0	0	10302	739	26	4	1298	4	NCOA3	20	46264187	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	2915538	46264187	16761333	71	49892										
DIDO1	0	genome.wustl.edu	37	chr20	61512736	61512736	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ttgggcaaggacgactttggTggtggagacatcaaggcgtc	16	7	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	20	61512736	61512736	T	G	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.4572	p.P1524	0.995	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	44	0	0	25	11	30.56	-	-	-	G	61512736	T	G	61512736	2	3	567	1	0	0	0	0	0	0	0	1	4558	1683	59	5		5	DIDO1	20	61512736	Silent	SNP	T	TCGA-BH-A0WA-01A-11D-A10G-09	15248549	61512736	1512784	72	49893										
MX2	0	genome.wustl.edu	37	chr21	42749839	42749839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tgccagccatcgccgtcatcGgggaccagagctcgggcaag	14	14	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	21	42749839	42749839	G	A	SNP	MX2	ENST00000330714	human	ensembl	69_37n	1	known	missense	c.373	p.G125R	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX2	HGNC	ENSG00000183486	69	0	0	26	19	42.22	-	-	-	A	42749839	G	A	42749839	3	1	567	1	0	0	0	0	1	0	0	0	10070	1116	39	1	379	1	MX2	21	42749839	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		42749839	5380056	73	49894										
TRPM2	0	genome.wustl.edu	37	chr21	45795833	45795833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	ggacccacggccagtacgggGtggagattcctctgaggacc	15	12	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	21	45795833	45795833	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.889	p.V297M	0.996	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	204	0	0	68	24	26.09	-	-	-	A	45795833	G	A	45795833	3	1	567	1	0	0	0	0	1	0	0	0	16682	1261	44	4	911	4	TRPM2	21	45795833	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	3045994	45795833	2334062	74	49895										
TCF20	0	genome.wustl.edu	37	chr22	42609210	42609210	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tatagcgcagacttccaggaGatttgctaggctcagttctg	11	9	2	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	22	42609210	42609210	G	A	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.2102	p.S701F	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	87	0	0	45	18	28.12	-	-	-	A	42609210	G	A	42609210	3	1	567	1	0	0	0	0	1	0	0	0	15785	942	33	2	3818	2	TCF20	22	42609210	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09		42609210	8695356	75	49896										
CXorf59	0	genome.wustl.edu	37	chrX	36117974	36117974	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gagtaaacgggcatggacagAtgtatttctacagatataca	10	6	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	36117974	36117974	A	G	SNP	CXorf59	ENST00000313548	human	ensembl	69_37n	1	known	missense	c.830	p.D277G	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	CXorf59	HGNC	ENSG00000176034	265	0	0	57	35	38.04	-	-	-	G	36117974	A	G	36117974	3	3	567	1	0	0	0	0	1	0	0	0	4146	333	12	5	852	5	CXorf59	23	36117974	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09		36117974	119152586	76	49897										
SLC9A7	0	genome.wustl.edu	37	chrX	46539151	46539151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	agcatgaaaaataattggagGcagaagaatgttgaaaaata	10	2	0	4			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	46539151	46539151	G	A	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	missense	c.565	p.P189S	1.000	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	188	0	0	44	23	34.33	-	-	-	A	46539151	G	A	46539151	3	1	567	1	0	0	0	0	1	0	0	0	14808	1203	42	4	1672	4	SLC9A7	23	46539151	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	10421177	46539151	108731409	77	49898										
ARMCX5	0	genome.wustl.edu	37	chrX	101857506	101857506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gtcacatgataaggccaataCtgggtccagacctgacagaa	10	10	1	4			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	101857506	101857506	C	G	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	missense	c.437	p.T146S	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	204	0	0	107	38	26.03	-	-	-	G	101857506	C	G	101857506	3	3	567	1	0	0	0	0	1	0	0	0	966	565	20	4	439	4	ARMCX5	23	101857506	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	55318355	101857506	53413054	78	49899										
GPRASP1	0	genome.wustl.edu	37	chrX	101912281	101912281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	atcctgtaactgcatacaatGtgagctgaaaattggttctg	9	7	1	2			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	101912281	101912281	G	A	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	missense	c.3440	p.C1147Y	0.997	superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	200	0	0	140	79	36.07	-	-	-	A	101912281	G	A	101912281	3	1	567	1	0	0	0	0	1	0	0	0	6773	1377	48	4	3442	4	GPRASP1	23	101912281	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	54775	101912281	53358279	79	49900										
FAM122B	0	genome.wustl.edu	37	chrX	133906273	133906273	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	tttagccagcgggtctgaggAtaagccactgctgctactac	11	11	1	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	133906273	133906273	A	T	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	missense	c.697	p.S233T	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	68	0	0	53	13	19.7	-	-	-	T	133906273	A	T	133906273	3	4	567	1	0	0	0	0	1	0	0	0	5460	333	12	5	181	5	FAM122B	23	133906273	Missense_Mutation	SNP	A	TCGA-BH-A0WA-01A-11D-A10G-09	31993992	133906273	21364287	80	49901										
FHL1	0	genome.wustl.edu	37	chrX	135288565	135288565	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cctgtctgcttgcccccgcaGgtccctccagctacaaggtg	10	17	1	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	135288565	135288565	G	A	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	FHL1	HGNC	ENSG00000022267	79	0	0	29	24	45.28	-	-	-	A	135288565	G	A	135288565	5	1	567	1	0	0	0	0	0	0	1	0	5924	1014	35	4	93	4	FHL1	23	135288565	Splice_Site	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	1382292	135288565	19981995	81	49902										
FMR1NB	0	genome.wustl.edu	37	chrX	147088318	147088318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	acacaaatgctgtttttcatCatcggggaccacgagcttca	8	11	3	0			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	147088318	147088318	C	T	SNP	FMR1NB	ENST00000370467	human	ensembl	69_37n	1	known	missense	c.494	p.S165L	0.000	superfamily_P_trefoil	superfamily_P_trefoil	-	no_errors	FMR1NB	HGNC	ENSG00000176988	314	0	0	111	132	53.88	-	-	-	T	147088318	C	T	147088318	3	4	567	1	0	0	0	0	1	0	0	0	6007	838	29	2	504	2	FMR1NB	23	147088318	Missense_Mutation	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	11799753	147088318	8182242	82	49903										
MAGEA12	0	genome.wustl.edu	37	chrX	151900151	151900151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	cctcccagattttctcctcaGgggcacagtcgccctctttt	7	16	3	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	151900151	151900151	G	T	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.650	p.P217H	0.022	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	317	0	0	125	103	45.18	-	-	-	T	151900151	G	T	151900151	3	4	567	1	0	0	0	0	1	0	0	0	9233	1000	35	4	298	4	MAGEA12	23	151900151	Missense_Mutation	SNP	G	TCGA-BH-A0WA-01A-11D-A10G-09	4811833	151900151	3370409	83	49904										
SLC6A8	0	genome.wustl.edu	37	chrX	152959549	152959549	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.170731707317073	14	0.0187198094404454	2.17766116941529	0.894396551724138	2.86206896551724	0.00126828081560393	0.0326415430963327	8	gcaaggaaaggggtggagggCggtgcggggctcggcctgag	23	7	0	1			TCGA-BH-A0WA-01A-11D-A10G-09	TCGA-BH-A0WA-10A-01D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4076f947-a1f0-4101-9a79-79828eb3bbe3	ad51aa61-d74c-430e-b8aa-1aae099e247d	X	152959549	152959549	C	T	SNP	SLC6A8	ENST00000485324	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC6A8	HGNC	ENSG00000130821	49	0	0	31	26	45.61	-	-	-	T	152959549	C	T	152959549	1	4	567	0	1	0	0	0	0	0	0	0	14779	783	27	1		1	SLC6A8	23	152959549	RNA	SNP	C	TCGA-BH-A0WA-01A-11D-A10G-09	1059398	152959549	2311011	84	49905										
EXOSC10	0	genome.wustl.edu	37	chr1	11147520	11147520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctgaccttaacgatggctggGtctgtgaggctctcattgag	13	9	2	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	1	11147520	11147520	G	A	SNP	EXOSC10	ENST00000376936	human	ensembl	69_37n	-1	known	silent	c.1074	p.D358	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C	-	no_errors	EXOSC10	HGNC	ENSG00000171824	232	1	0.43	163	53	24.42	-	-	-	A	11147520	G	A	11147520	2	1	568	1	0	0	0	0	0	0	0	1	5350	1252	44	4		4	EXOSC10	1	11147520	Silent	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		11147520	238103101	1	49906										
ATPAF1	0	genome.wustl.edu	37	chr1	47130954	47130954	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ttccacacatttgataaaatCaccttgcctggaatgcccca	5	13	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	1	47130954	47130954	C	T	SNP	ATPAF1	ENST00000576409	human	ensembl	69_37n	-1	known	missense	c.418	p.D140N	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472	186	0	0	154	18	10.47	-	-	-	T	47130954	C	T	47130954	3	4	568	1	0	0	0	0	1	0	0	0	1204	826	29	2	669	2	ATPAF1	1	47130954	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	35983434	47130954	202119667	2	49907										
RORC	0	genome.wustl.edu	37	chr1	151787136	151787136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	cagccgcagctggcatgtctCcctgtaggacttgcagacgc	12	14	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	1	151787136	151787136	C	T	SNP	RORC	ENST00000392697	human	ensembl	69_37n	-1	known	missense	c.1009	p.E337K	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ROR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365	92	0	0	112	26	18.84	-	-	-	T	151787136	C	T	151787136	3	4	568	1	0	0	0	0	1	0	0	0	13616	864	30	2	733	2	RORC	1	151787136	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	104656182	151787136	97463485	3	49908										
PRRX1	0	genome.wustl.edu	37	chr1	170688909	170688909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aaaaaagaagagaaagcagcGaaggaataggacaaccttca	10	6	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	1	170688909	170688909	G	A	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.284	p.R95Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	143	1	0.69	163	30	15.54	-	-	-	A	170688909	G	A	170688909	3	1	568	1	0	0	0	0	1	0	0	0	12692	1058	37	1	290	1	PRRX1	1	170688909	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	18901773	170688909	78561712	4	49909										
ERO1LB	0	genome.wustl.edu	37	chr1	236385305	236385305	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ttcttgaaatgtaatcggaaTtcctcctagcaagcagaaaa	7	8	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	1	236385305	236385305	T	A	SNP	ERO1LB	ENST00000354619	human	ensembl	69_37n	-1	known	missense	c.1128	p.E376D	1.000	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	pfam_ER_oxidoreductin-1,superfamily_ER_oxidoreductin-1,pirsf_ER_oxidoreductin-1	-	no_errors	ERO1LB	HGNC	ENSG00000086619	304	2	0.65	306	83	21.28	-	-	-	A	236385305	T	A	236385305	3	1	568	1	0	0	0	0	1	0	0	0	5277	1490	52	5	287	5	ERO1LB	1	236385305	Missense_Mutation	SNP	T	TCGA-BH-A18F-01A-11D-A12B-09	65696396	236385305	12865316	5	49910										
NLRC4	0	genome.wustl.edu	37	chr2	32476071	32476071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agtcagggcaccaaactgccGtatgtgcctcaggcactcag	11	13	3	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	32476071	32476071	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.862	p.R288W	0.614	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	133	1	0.75	98	24	19.67	-	-	-	A	32476071	G	A	32476071	3	1	568	1	0	0	0	0	1	0	0	0	10541	1144	40	1	2236	1	NLRC4	2	32476071	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		32476071	210723302	6	49911										
XPO1	0	genome.wustl.edu	37	chr2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agatttaccatgcatgaattCgaacagcttgttaactacag	7	8	0	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	61719472	61719472	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	147	0	0	121	33	21.43	-	-	-	T	61719472	C	T	61719472	3	4	568	1	0	0	0	0	1	0	0	0	17542	893	31	1	1548	1	XPO1	2	61719472	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	29243401	61719472	181479901	7	49912										
POLR1B	0	genome.wustl.edu	37	chr2	113308539	113308539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tatgttgaactttatttaccGaaaagaactgttctttcttc	5	7	2	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	113308539	113308539	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	missense	c.836	p.R279Q	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	451	0	0	383	97	20.17	-	-	-	A	113308539	G	A	113308539	3	1	568	1	0	0	0	0	1	0	0	0	12284	1058	37	1	740	1	POLR1B	2	113308539	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	51589067	113308539	129890834	8	49913										
CNTNAP5	0	genome.wustl.edu	37	chr2	125281897	125281897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	caggcagcaacttgaatgatGgcctgtggcactcggttagc	13	10	0	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	125281897	125281897	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.1342	p.G448S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	124	0	0	120	27	18.24	-	-	-	A	125281897	G	A	125281897	3	1	568	1	0	0	0	0	1	0	0	0	3680	1348	47	4	1376	4	CNTNAP5	2	125281897	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	11973358	125281897	117917476	9	49914										
NEB	0	genome.wustl.edu	37	chr2	152384078	152384078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ccagtgggctttgttggcttCgtactgtttcttatagtcca	10	9	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	152384078	152384078	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.21757	p.E7253K	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	241	0	0	186	53	22.18	-	-	-	T	152384078	C	T	152384078	3	4	568	1	0	0	0	0	1	0	0	0	10374	893	31	1	3964	1	NEB	2	152384078	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	27102181	152384078	90815295	10	49915										
METTL5	0	genome.wustl.edu	37	chr2	170676119	170676119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tatactgctgttcttgccatTtccaaagcagtctttagaaa	6	9	2	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	170676119	170676119	T	C	SNP	METTL5	ENST00000537825	human	ensembl	69_37n	-1	known	missense	c.220	p.N74D	0.998	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA	-	no_start_codon	METTL5	HGNC	ENSG00000138382	410	0	0	293	96	24.62	-	-	-	C	170676119	T	C	170676119	3	2	568	1	0	0	0	0	1	0	0	0	9574	1838	64	5	204	5	METTL5	2	170676119	Missense_Mutation	SNP	T	TCGA-BH-A18F-01A-11D-A12B-09	18292041	170676119	72523254	11	49916										
INPP5D	0	genome.wustl.edu	37	chr2	234094557	234094557	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agctggtggtgaagtttggtGagactcttccaaaggtaatt	13	5	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	2	234094557	234094557	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	1	known	missense	c.2308	p.E770K	0.991	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	524	1	0.19	443	131	22.74	-	-	-	A	234094557	G	A	234094557	3	1	568	1	0	0	0	0	1	0	0	0	7810	1291	45	2	1934	2	INPP5D	2	234094557	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	63418438	234094557	9104816	12	49917										
SCN5A	0	genome.wustl.edu	37	chr3	38593036	38593036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aagtacttctggatgatgtcCgagagcacagtgcctgtggg	14	8	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	3	38593036	38593036	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.4827	p.S1609	0.210	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	112	0	0	58	29	33.33	-	-	-	T	38593036	C	T	38593036	2	4	568	1	0	0	0	0	0	0	0	1	14010	639	23	1		1	SCN5A	3	38593036	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		38593036	159429394	13	49918										
PIK3CA	0	genome.wustl.edu	37	chr3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctctctctgaaatcactgagCaggagaaagattttctatgg	9	8	4	4			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	163	1	0.61	147	49	25	-	-	-	A	178936094	C	A	178936094	3	1	568	1	0	0	0	0	1	0	0	0	11987	711	25	4	1670	4	PIK3CA	3	178936094	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	140343058	178936094	19086336	14	49919										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	223	0	0	129	56	30.27	-	-	-	G	178952085	A	G	178952085	3	3	568	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A18F-01A-11D-A12B-09	15991	178952085	19070345	15	49920										
GRK4	0	genome.wustl.edu	37	chr4	3040213	3040213	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gtttccagaccaaacagaggCttcttctatagactcttcag	7	11	4	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	4	3040213	3040213	C	T	SNP	GRK4	ENST00000398052	human	ensembl	69_37n	1	known	silent	c.1656	p.G552	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388	194	0	0	205	29	12.39	-	-	-	T	3040213	C	T	3040213	2	4	568	1	0	0	0	0	0	0	0	1	6842	784	28	4		4	GRK4	4	3040213	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		3040213	188114063	16	49921										
SEC31A	0	genome.wustl.edu	37	chr4	83763540	83763541	+	Frame_Shift_Ins	INS	-	-	T													0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	atatgtaaggggtgttagggINStaagcgtttgaagtaggagg							TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	4	83763540	83763541	-	T	INS	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2721_2720	p.Y907fs	1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	174	0	0	106	18	14.52	-	-	-	T	83763541	-	T	83763540	7	5	568	1	0	1	1	0	0	0	0	0	14086	1256	44	0	965	0	SEC31A	4	83763540	Frame_Shift_Ins	INS	-	TCGA-BH-A18F-01A-11D-A12B-09	80723327	83763540	107390736	17	49922										
C4A	0	genome.wustl.edu	37	chr6	31962113	31962113	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tctgtccgccgctttgagcaGctggagctgcggcctgtcct	13	14	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	6	31962113	31962113	G	C	SNP	C4A	ENST00000428956	human	ensembl	69_37n	1	known	missense	c.2544	p.Q848H	1.000	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A2M_N,pfam_Netrin_module_non-TIMP,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C4A	HGNC	ENSG00000244731	104	0	0	123	18	12.77	-	-	-	C	31962113	G	C	31962113	3	2	568	1	0	0	0	0	1	0	0	0	2268	962	34	4	2622	4	C4A	6	31962113	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		31962113	139152954	18	49923										
KIFC1	0	genome.wustl.edu	37	chr6	33371820	33371820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aagagcggctgagcacgcagGagggcttggtgcaagagctt	17	8	0	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	6	33371820	33371820	G	C	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.670	p.E224Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	205	2	0.97	128	43	25.15	-	-	-	C	33371820	G	C	33371820	3	2	568	1	0	0	0	0	1	0	0	0	8364	1175	41	2	692	2	KIFC1	6	33371820	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	1409707	33371820	137743247	19	49924										
CLIP2	0	genome.wustl.edu	37	chr7	73790952	73790952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agctggaaaaactggacgtgGagtaccggggccaggcgcag	17	9	0	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	7	73790952	73790952	G	C	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.2221	p.E741Q	0.998	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	58	0	0	50	20	28.57	-	-	-	C	73790952	G	C	73790952	3	2	568	1	0	0	0	0	1	0	0	0	3563	1175	41	2	2255	2	CLIP2	7	73790952	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		73790952	85347711	20	49925										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74212296	74212296	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aggctgcacgggggatttctGggttggacttgggtgtgcaa	18	6	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	7	74212296	74212296	G	A	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	nonsense	c.1555	p.Q519*	0.000	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	145	0	0	121	28	18.79	-	-	-	A	74212296	G	A	74212296	4	1	568	1	0	0	0	0	0	1	0	0	6920	1357	47	4	1298	4	GTF2IRD2	7	74212296	Nonsense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	421344	74212296	84926367	21	49926										
AP4M1	0	genome.wustl.edu	37	chr7	99702544	99702547	+	Frame_Shift_Del	DEL	CTTC	CTTC	-													0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ggagagattcggctcaagagCttccttcctagcggctctgg							TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	CTTC	CTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	7	99702544	99702547	CTTC	-	DEL	AP4M1	ENST00000359593	human	ensembl	69_37n	1	known	frame_shift_del	c.654_657	p.P221fs	1.000:1.000:1.000:1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	214	0	0	175	33	15.79	-	-	-	-	99702547	CTTC	-	99702544	7	5	568	1	0	1	0	1	0	0	0	0	754	796	28	0	684	0	AP4M1	7	99702544	Frame_Shift_Del	DEL	CTTC	TCGA-BH-A18F-01A-11D-A12B-09	25490248	99702544	59436119	22	49927										
FLNC	0	genome.wustl.edu	37	chr7	128490064	128490064	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gccgcacgaggaggagccctCtgaagtgccacagctgcgcc	14	15	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	7	128490064	128490064	C	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.5234	p.S1745Y	0.025	NULL	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	23	0	0	19	7	25.93	-	-	-	A	128490064	C	A	128490064	3	1	568	1	0	0	0	0	1	0	0	0	5981	913	32	2	5356	2	FLNC	7	128490064	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	28787520	128490064	30648599	23	49928										
FAM131B	0	genome.wustl.edu	37	chr7	143057212	143057212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tttgatcgacatccttcaggCccttccaatccactgcaatc	5	15	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	7	143057212	143057212	C	T	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.59	p.G20D	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	218	1	0.46	145	54	27.14	-	-	-	T	143057212	C	T	143057212	3	4	568	1	0	0	0	0	1	0	0	0	5480	739	26	4	1047	4	FAM131B	7	143057212	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	14567148	143057212	16081451	24	49929										
VPS13B	0	genome.wustl.edu	37	chr8	100479736	100479736	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tgcctagtggaacctatgggTtgcacctccactctagctgt	10	12	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	8	100479736	100479736	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.3540	p.G1180	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	308	1	0.32	230	68	22.74	-	-	-	C	100479736	T	C	100479736	2	2	568	1	0	0	0	0	0	0	0	1	17287	1712	60	5		5	VPS13B	8	100479736	Silent	SNP	T	TCGA-BH-A18F-01A-11D-A12B-09		100479736	45884286	25	49930										
C8orf73	0	genome.wustl.edu	37	chr8	144652216	144652216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gaggcctcgcaggtggtggtCggcatgtgccaccatagcac	15	12	0	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	8	144652216	144652216	C	T	SNP	C8orf73	ENST00000398882	human	ensembl	69_37n	-1	known	missense	c.1063	p.D355N	0.988	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C8orf73	HGNC	ENSG00000204839	44	0	0	29	14	32.56	-	-	-	T	144652216	C	T	144652216	3	4	568	1	0	0	0	0	1	0	0	0	2460	884	31	1	1128	1	C8orf73	8	144652216	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	44172480	144652216	1711806	26	49931										
CNTLN	0	genome.wustl.edu	37	chr9	17466866	17466866	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tgttagccaatgaaaaagtaGaagagttcaccacatttgtg	9	6	1	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	9	17466866	17466866	G	C	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.3832	p.E1278Q	0.988	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	168	1	0.59	142	72	33.64	-	-	-	C	17466866	G	C	17466866	3	2	568	1	0	0	0	0	1	0	0	0	3669	943	33	2	3952	2	CNTLN	9	17466866	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		17466866	123746565	27	49932										
PPP3CB	0	genome.wustl.edu	37	chr10	75231327	75231327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aagaggcaaactatcaaaagCttccatacaagcttcataga	6	9	2	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	10	75231327	75231327	C	T	SNP	PPP3CB	ENST00000394829	human	ensembl	69_37n	-1	known	missense	c.568	p.A190T	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758	176	0	0	149	43	22.28	-	-	-	T	75231327	C	T	75231327	3	4	568	1	0	0	0	0	1	0	0	0	12475	797	28	4	1049	4	PPP3CB	10	75231327	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		75231327	60303420	28	49933										
ANXA11	0	genome.wustl.edu	37	chr10	81923292	81923292	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctgtcgtgggaaaagtacctGagagagagagatgaggagcc	16	6	0	4			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	10	81923292	81923292	G	C	SNP	ANXA11	ENST00000265447	human	ensembl	69_37n	-1	known	missense	c.1027	p.Q343E	1.000	superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXI,prints_AnnexinVII	-	no_errors	ANXA11	HGNC	ENSG00000122359	163	0	0	147	40	21.39	-	-	-	C	81923292	G	C	81923292	3	2	568	1	0	0	0	0	1	0	0	0	715	1299	45	2	518	2	ANXA11	10	81923292	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	6691965	81923292	53611455	29	49934										
LRIT2	0	genome.wustl.edu	37	chr10	85984684	85984684	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctcagttctggcaggtgttcCagggctcctaggtggatcac	13	11	3	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	10	85984684	85984684	C	A	SNP	LRIT2	ENST00000538192	human	ensembl	69_37n	-1	known	silent	c.297	p.L99	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT2	HGNC	ENSG00000204033	179	1	0.56	125	49	27.84	-	-	-	A	85984684	C	A	85984684	2	1	568	1	0	0	0	0	0	0	0	1	9014	581	21	4		4	LRIT2	10	85984684	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	4061392	85984684	49550063	30	49935										
USP47	0	genome.wustl.edu	37	chr11	11977640	11977640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	actccagaagactggacatcGtgtaacatactcacctcgta	7	12	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	11	11977640	11977640	G	A	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	missense	c.4046	p.R1349H	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	171	0	0	154	44	22.22	-	-	-	A	11977640	G	A	11977640	3	1	568	1	0	0	0	0	1	0	0	0	17175	1145	40	1	3888	1	USP47	11	11977640	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		11977640	123028876	31	49936										
POLR2G	0	genome.wustl.edu	37	chr11	62533187	62533187	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gtggggacccgtgtggacaaGaatgacattgtgagtctttt	14	6	1	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	11	62533187	62533187	G	A	SNP	POLR2G	ENST00000301788	human	ensembl	69_37n	1	known	silent	c.462	p.K154	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_RNA_pol_Rpb7_N,pfam_RNA_pol_III_Rbc25,superfamily_NA-bd_OB-fold-like,superfamily_RNA_pol_Rpb7_N,smart_RNA-binding_domain_S1	-	no_errors	POLR2G	HGNC	ENSG00000168002	319	0	0	275	92	25	-	-	-	A	62533187	G	A	62533187	2	1	568	1	0	0	0	0	0	0	0	1	12294	933	33	2		2	POLR2G	11	62533187	Silent	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	50555547	62533187	72473329	32	49937										
APOA1	0	genome.wustl.edu	37	chr11	116706641	116706641	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tcgagcgcgggcttggccttCtcgctgagcgtgctcagatg	15	12	2	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	11	116706641	116706641	C	T	SNP	APOA1	ENST00000236850	human	ensembl	69_37n	-1	known	silent	c.687	p.E229	1.000	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137	28	0	0	23	5	17.86	-	-	-	T	116706641	C	T	116706641	2	4	568	1	0	0	0	0	0	0	0	1	782	912	32	2		2	APOA1	11	116706641	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	54173454	116706641	18299875	33	49938										
GDF3	0	genome.wustl.edu	37	chr12	7843251	7843251	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aggttaaagtagaggagcttCtgcaggcaggaggaagcttg	16	5	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	12	7843251	7843251	C	T	SNP	GDF3	ENST00000329913	human	ensembl	69_37n	-1	known	silent	c.318	p.Q106	0.963	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344	50	0	0	35	19	34.55	-	-	-	T	7843251	C	T	7843251	2	4	568	1	0	0	0	0	0	0	0	1	6367	912	32	2		2	GDF3	12	7843251	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		7843251	126008644	34	49939										
COL2A1	0	genome.wustl.edu	37	chr12	48381467	48381467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	cttgagcaccttcaggaccaCgggcaccagtggggccggct	14	14	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	12	48381467	48381467	C	T	SNP	COL2A1	ENST00000380518	human	ensembl	69_37n	-1	known	missense	c.1148	p.R383H	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	86	0	0	98	20	16.95	-	-	-	T	48381467	C	T	48381467	3	4	568	1	0	0	0	0	1	0	0	0	3717	536	19	1	3459	1	COL2A1	12	48381467	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	40538216	48381467	85470428	35	49940										
KRT72	0	genome.wustl.edu	37	chr12	52981502	52981502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tcacgagctcctggtactcaCgcagcatccgtgccagctcc	9	17	2	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	12	52981502	52981502	C	T	SNP	KRT72	ENST00000293745	human	ensembl	69_37n	-1	known	missense	c.1223	p.R408H	0.995	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486	178	0	0	171	40	18.96	-	-	-	T	52981502	C	T	52981502	3	4	568	1	0	0	0	0	1	0	0	0	8538	536	19	1	324	1	KRT72	12	52981502	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	4600035	52981502	80870393	36	49941										
KIF5A	0	genome.wustl.edu	37	chr12	57944160	57944160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agttcatccccattttccaaGgggacgacagcgtcgttatt	9	11	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	12	57944160	57944160	G	A	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	missense	c.106	p.G36R	1.000	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	79	0	0	62	28	31.11	-	-	-	A	57944160	G	A	57944160	3	1	568	1	0	0	0	0	1	0	0	0	8357	1000	35	4	108	4	KIF5A	12	57944160	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	4962658	57944160	75907735	37	49942										
GPR97	0	genome.wustl.edu	37	chr16	57713121	57713121	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ggcctgggagatggcagcggCgtgttgaacaatcgcctggt	17	9	0	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	16	57713121	57713121	C	T	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	silent	c.525	p.G175	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	175	1	0.57	95	53	35.1	-	-	-	T	57713121	C	T	57713121	2	4	568	1	0	0	0	0	0	0	0	1	6771	755	27	1		1	GPR97	16	57713121	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		57713121	32641632	38	49943										
CES3	0	genome.wustl.edu	37	chr16	67006796	67006796	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctgcctccttggccccaattCaaccaggcggaacaatatct	7	15	2	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	16	67006796	67006796	C	T	SNP	CES3	ENST00000303334	human	ensembl	69_37n	1	known	silent	c.1560	p.F520	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828	147	0	0	100	31	23.48	-	-	-	T	67006796	C	T	67006796	2	4	568	1	0	0	0	0	0	0	0	1	3300	825	29	2		2	CES3	16	67006796	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	9293675	67006796	23347957	39	49944										
CDH1	0	genome.wustl.edu	37	chr16	68855935	68855936	+	Frame_Shift_Ins	INS	-	-	CTGC													0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctactggaacagggacacttINSctgctgatcctgtctgatgt							TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	16	68855935	68855936	-	CTGC	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1743_1744	p.L582fs	0.393:0.403	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	200	0	0	156	51	24.64	-	-	-	CTGC	68855936	-	CTGC	68855935	7	5	568	1	0	1	1	0	0	0	0	0	3124	1770	62	0	1789	0	CDH1	16	68855935	Frame_Shift_Ins	INS	-	TCGA-BH-A18F-01A-11D-A12B-09	1849139	68855935	21498818	40	49945										
NF1	0	genome.wustl.edu	37	chr17	29562657	29562660	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agctcgagttctggttactcTgtttgattctcggcatttac							TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	17	29562657	29562660	TGTT	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_del	c.3737_3740	p.F1247fs	1.000:0.780:1.000:1.000	superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	381	0	0	238	83	25.62	-	-	-	-	29562660	TGTT	-	29562657	7	5	568	1	0	1	0	1	0	0	0	0	10428	1580	55	0	3908	0	NF1	17	29562657	Frame_Shift_Del	DEL	TGTT	TCGA-BH-A18F-01A-11D-A12B-09		29562657	51632553	41	49946										
SOCS6	0	genome.wustl.edu	37	chr18	67992128	67992128	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	aaaaagcgagagcctgatggGtacgctaaaaaggcggcttt	13	7	0	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	18	67992128	67992128	G	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.224	p.G75V	1.000	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	175	0	0	123	37	23.12	-	-	-	T	67992128	G	T	67992128	3	4	568	1	0	0	0	0	1	0	0	0	15007	1261	44	4	226	4	SOCS6	18	67992128	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		67992128	10085120	42	49947										
ZNF257	0	genome.wustl.edu	37	chr19	22271888	22271888	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	cctttaaccggtcttcatacCttattcgacataagataatt	4	10	2	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	19	22271888	22271888	C	A	SNP	ZNF257	ENST00000435820	human	ensembl	69_37n	1	known	missense	c.1336	p.L446I	0.018	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134	132	0	0	119	20	14.39	-	-	-	A	22271888	C	A	22271888	3	1	568	1	0	0	0	0	1	0	0	0	17896	681	24	4	1350	4	ZNF257	19	22271888	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		22271888	36857095	43	49948										
CEACAM3	0	genome.wustl.edu	37	chr19	42301853	42301853	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agtcagatcttgtgaatgaaGaagcaactggacagttccat	10	7	2	4			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	19	42301853	42301853	G	A	SNP	CEACAM3	ENST00000357396	human	ensembl	69_37n	1	known	missense	c.397	p.E133K	0.000	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956	545	2	0.37	341	93	21.43	-	-	-	A	42301853	G	A	42301853	3	1	568	1	0	0	0	0	1	0	0	0	3222	943	33	2	403	2	CEACAM3	19	42301853	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	20029965	42301853	16827130	44	49949										
ZFP64	0	genome.wustl.edu	37	chr20	50701381	50701381	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	agaggggcccggttctccgtCttggcctcgtccctgtgcac	13	15	2	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	20	50701381	50701381	C	T	SNP	ZFP64	ENST00000361387	human	ensembl	69_37n	-1	known	silent	c.1653	p.K551	0.148	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	77	0	0	57	13	18.57	-	-	-	T	50701381	C	T	50701381	2	4	568	1	0	0	0	0	0	0	0	1	17748	912	32	2		2	ZFP64	20	50701381	Silent	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09		50701381	12324139	45	49950										
TRPM2	0	genome.wustl.edu	37	chr21	45826592	45826592	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ggtggactggctgttccgagGggccgtctaccactcctacc	13	14	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	21	45826592	45826592	G	C	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.2906	p.G969A	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	104	0	0	90	12	11.76	-	-	-	C	45826592	G	C	45826592	3	2	568	1	0	0	0	0	1	0	0	0	16682	1232	43	4	2980	4	TRPM2	21	45826592	Missense_Mutation	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		45826592	2303303	46	49951										
BEND2	0	genome.wustl.edu	37	chrX	18195777	18195777	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	ctaatcaggatttccttggaGaacaaaatacgaaccaagta	7	8	1	1			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	X	18195777	18195777	G	A	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	silent	c.1542	p.F514	0.998	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	486	1	0.2	385	110	22.22	-	-	-	A	18195777	G	A	18195777	2	1	568	1	0	0	0	0	0	0	0	1	1402	933	33	2		2	BEND2	23	18195777	Silent	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09		18195777	137074783	47	49952										
PAGE1	0	genome.wustl.edu	37	chrX	49459371	49459371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	attaatcttcttagaaaaccCatatttcacactgaaaagag	4	8	3	3			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	X	49459371	49459371	C	G	SNP	PAGE1	ENST00000376150	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.006	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985	191	0	0	138	42	23.2	-	-	-	G	49459371	C	G	49459371	3	3	568	1	0	0	0	0	1	0	0	0	11462	594	21	4	457	4	PAGE1	23	49459371	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	31263594	49459371	105811189	48	49953										
P2RY10	0	genome.wustl.edu	37	chrX	78216027	78216027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	accataaatccatggctaacCttgacaaatacactgaaaca	4	11	0	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	X	78216027	78216027	C	T	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.10	p.L4F	0.122	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	248	1	0.4	194	54	21.77	-	-	-	T	78216027	C	T	78216027	3	4	568	1	0	0	0	0	1	0	0	0	11420	681	24	4	12	4	P2RY10	23	78216027	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	28756656	78216027	77054533	49	49954										
ZCCHC16	0	genome.wustl.edu	37	chrX	111698859	111698859	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	gccaaacgttctcgagctccGgcaacgacaaataacacagc	8	14	1	0			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	X	111698859	111698859	G	A	SNP	ZCCHC16	ENST00000340433	human	ensembl	69_37n	1	known	silent	c.903	p.P301	0.795	superfamily_Znf_CCHC	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823	79	0	0	72	17	19.1	-	-	-	A	111698859	G	A	111698859	2	1	568	1	0	0	0	0	0	0	0	1	17680	1103	39	1		1	ZCCHC16	23	111698859	Silent	SNP	G	TCGA-BH-A18F-01A-11D-A12B-09	33482832	111698859	43571701	50	49955										
CUL4B	0	genome.wustl.edu	37	chrX	119691821	119691821	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.215686274509804	11	0.0438297235813947	2.19228388694038	2.10687022900763	2.21221374045802	0.0154193027325347	0.179524738957368	6	tacttaattgaagtactattCtgaatagcttccactgcttc	5	9	1	2			TCGA-BH-A18F-01A-11D-A12B-09	TCGA-BH-A18F-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d414b3fe-b768-4a98-b285-5284bffa66f9	8404ab78-054d-4cd1-b92e-951f3047ff45	X	119691821	119691821	C	A	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.684	p.Q228H	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	638	2	0.31	506	142	21.91	-	-	-	A	119691821	C	A	119691821	3	1	568	1	0	0	0	0	1	0	0	0	4089	912	32	2	2133	2	CUL4B	23	119691821	Missense_Mutation	SNP	C	TCGA-BH-A18F-01A-11D-A12B-09	7992962	119691821	35578739	51	49956										
KLHL17	0	genome.wustl.edu	37	chr1	897821	897821	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgagctgggtgaaacacgaCgtggacgcccgcaggcagca	15	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	897821	897821	C	T	SNP	KLHL17	ENST00000338591	human	ensembl	69_37n	1	known	silent	c.798	p.D266	0.567	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961	50	0	0	25	12	32.43	-	-	-	T	897821	C	T	897821	2	4	569	1	0	0	0	0	0	0	0	1	8425	535	19	1		1	KLHL17	1	897821	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		897821	248352800	1	49957										
MORN1	0	genome.wustl.edu	37	chr1	2303937	2303937	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tactcttggcaatttccccgTggtcctgcagcagctgaacg	10	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	2303937	2303937	T	C	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	missense	c.728	p.H243R	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	115	0	0	80	34	29.57	-	-	-	C	2303937	T	C	2303937	3	2	569	1	0	0	0	0	1	0	0	0	9780	1696	59	5	793	5	MORN1	1	2303937	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1406116	2303937	246946684	2	49958										
RNF207	0	genome.wustl.edu	37	chr1	6269366	6269366	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtggacctggaatcggcttAcgtgcagggctgcgagcggc	17	11	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	6269366	6269366	A	G	SNP	RNF207	ENST00000377939	human	ensembl	69_37n	1	novel	missense	c.590	p.Y197C	1.000	NULL	pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	RNF207	HGNC	ENSG00000158286	21	0	0	12	7	36.84	-	-	-	G	6269366	A	G	6269366	3	3	569	1	0	0	0	0	1	0	0	0	13560	391	14	5	608	5	RNF207	1	6269366	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3965429	6269366	242981255	3	49959										
GPR153	0	genome.wustl.edu	37	chr1	6310563	6310563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagagctggggcaggcccccCtccagggcggagatctcata	14	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	6310563	6310563	C	A	SNP	GPR153	ENST00000377893	human	ensembl	69_37n	-1	known	missense	c.1101	p.E367D	0.999	prints_GPCR_153	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153,prints_GPCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	60	0	0	30	32	51.61	-	-	-	A	6310563	C	A	6310563	3	1	569	1	0	0	0	0	1	0	0	0	6709	680	24	4	736	4	GPR153	1	6310563	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	41197	6310563	242940058	4	49960										
RERE	0	genome.wustl.edu	37	chr1	8416175	8416175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttaccgaaaactgggtggcGaagcatctcgtgctcgtgtg	13	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	8416175	8416175	G	A	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.4471	p.R1491C	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	199	0	0	123	86	40.95	-	-	-	A	8416175	G	A	8416175	3	1	569	1	0	0	0	0	1	0	0	0	13314	1058	37	1	241	1	RERE	1	8416175	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2105612	8416175	240834446	5	49961										
CLCNKA	0	genome.wustl.edu	37	chr1	16349186	16349186	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcaggagctgtggggcccCtgtccccacatccgccgagc	13	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	16349186	16349186	C	A	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	silent	c.72	p.P24	0.710	prints_Cl_channel-K	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	106	0	0	61	40	39.6	-	-	-	A	16349186	C	A	16349186	2	1	569	1	0	0	0	0	0	0	0	1	3499	668	24	4		4	CLCNKA	1	16349186	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7933011	16349186	232901435	6	49962										
PADI2	0	genome.wustl.edu	37	chr1	17395442	17395442	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgtcccaaaggtctcccagCggggctgtccagtccatgtc	11	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	17395442	17395442	C	T	SNP	PADI2	ENST00000466151	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI2	HGNC	ENSG00000117115	17	0	0	12	8	40	-	-	-	T	17395442	C	T	17395442	1	4	569	0	1	0	0	0	0	0	0	0	11451	783	27	1		1	PADI2	1	17395442	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1046256	17395442	231855179	7	49963										
RCC2	0	genome.wustl.edu	37	chr1	17739610	17739610	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctccagccgcagaggtcctgCactgcttttgggtacatggt	12	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	17739610	17739610	C	T	SNP	RCC2	ENST00000375433	human	ensembl	69_37n	-1	known	silent	c.1272	p.V424	0.987	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051	209	0	0	135	101	42.8	-	-	-	T	17739610	C	T	17739610	2	4	569	1	0	0	0	0	0	0	0	1	13257	697	25	4		4	RCC2	1	17739610	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	344168	17739610	231511011	8	49964										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17953903	17953903	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacagagctggagacgctgGctgagaagctgaacgagcag	15	9	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	17953903	17953903	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	missense	c.1489	p.A497T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	30	0	0	30	9	23.08	-	-	-	A	17953903	G	A	17953903	3	1	569	1	0	0	0	0	1	0	0	0	897	1203	42	4	1543	4	ARHGEF10L	1	17953903	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	214293	17953903	231296718	9	49965										
PAX7	0	genome.wustl.edu	37	chr1	18960957	18960957	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcgtgtctcccacggctgCgtctccaagattctttgccg	10	15	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	18960957	18960957	C	T	SNP	PAX7	ENST00000375375	human	ensembl	69_37n	1	known	silent	c.246	p.C82	0.968	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeodomain,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,prints_Paired_dom,pfscan_Homeodomain,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709	67	0	0	49	35	41.18	-	-	-	T	18960957	C	T	18960957	2	4	569	1	0	0	0	0	0	0	0	1	11557	776	27	1		1	PAX7	1	18960957	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1007054	18960957	230289664	10	49966										
CAPZB	0	genome.wustl.edu	37	chr1	19683162	19683162	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcctccgaggttcatggtGccagagccagatttgttggt	13	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	19683162	19683162	G	A	SNP	CAPZB	ENST00000433834	human	ensembl	69_37n	-1	known	silent	c.642	p.G214	0.983	pfam_WASH_F-actin_cap_beta	pfam_WASH_F-actin_cap_beta,prints_WASH_F-actin_cap_beta	-	no_errors	CAPZB	HGNC	ENSG00000077549	209	0	0	139	96	40.34	-	-	-	A	19683162	G	A	19683162	2	1	569	1	0	0	0	0	0	0	0	1	2668	1306	46	4		4	CAPZB	1	19683162	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	722205	19683162	229567459	11	49967										
KIF17	0	genome.wustl.edu	37	chr1	20992772	20992772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagatcggaagtagttgctgGcaatgttttcactgttgctc	11	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	20992772	20992772	G	A	SNP	KIF17	ENST00000247986	human	ensembl	69_37n	-1	known	missense	c.2846	p.A949V	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	231	0	0	165	71	29.96	-	-	-	A	20992772	G	A	20992772	3	1	569	1	0	0	0	0	1	0	0	0	8331	1203	42	4	251	4	KIF17	1	20992772	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1309610	20992772	228257849	12	49968										
HSPG2	0	genome.wustl.edu	37	chr1	22174392	22174392	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gataacagtgatggcaccggGgacctctctgccaccctctg	11	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	22174392	22174392	G	T	SNP	HSPG2	ENST00000453796	human	ensembl	69_37n	-1	known	silent	c.60	p.S20	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:no_stop_codon	HSPG2	HGNC	ENSG00000142798	106	0	0	67	31	31.63	-	-	-	T	22174392	G	T	22174392	2	4	569	1	0	0	0	0	0	0	0	1	7484	1247	43	4		4	HSPG2	1	22174392	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1181620	22174392	227076229	13	49969										
CELA3B	0	genome.wustl.edu	37	chr1	22303551	22303551	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatgatgctccggctgctcAgttccctcctccttgtggcc	9	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	22303551	22303551	A	G	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	missense	c.19	p.S7G	0.517	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	561	0	0	345	200	36.7	-	-	-	G	22303551	A	G	22303551	3	3	569	1	0	0	0	0	1	0	0	0	3243	188	7	5	21	5	CELA3B	1	22303551	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	129159	22303551	226947070	14	49970										
GRHL3	0	genome.wustl.edu	37	chr1	24657985	24657985	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctcttacactagtgaggaTgaggcctggaagacgtacct	11	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	24657985	24657985	T	C	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	1	known	silent	c.87	p.D29	0.975	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	246	0	0	156	94	37.45	-	-	-	C	24657985	T	C	24657985	2	2	569	1	0	0	0	0	0	0	0	1	6816	1461	51	5		5	GRHL3	1	24657985	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2354434	24657985	224592636	15	49971										
RUNX3	0	genome.wustl.edu	37	chr1	25228982	25228982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggccggcatgcccgccacGctgaggctgctgatgctcgt	15	14	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	25228982	25228982	G	A	SNP	RUNX3	ENST00000338888	human	ensembl	69_37n	-1	known	silent	c.921	p.S307	0.997	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,prints_AML1_Runt,pfscan_AML1/Runt_N	-	no_errors	RUNX3	HGNC	ENSG00000020633	30	0	0	21	18	45	-	-	-	A	25228982	G	A	25228982	2	1	569	1	0	0	0	0	0	0	0	1	13835	1078	38	1		1	RUNX3	1	25228982	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	570997	25228982	224021639	16	49972										
TMEM57	0	genome.wustl.edu	37	chr1	25775353	25775353	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtcaaatataatatgcctgCtgttcatccccatacagtgg	7	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	25775353	25775353	C	A	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	missense	c.277	p.L93M	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	500	0	0	347	230	39.86	-	-	-	A	25775353	C	A	25775353	3	1	569	1	0	0	0	0	1	0	0	0	16279	796	28	4	287	4	TMEM57	1	25775353	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	546371	25775353	223475268	17	49973										
WDTC1	0	genome.wustl.edu	37	chr1	27622855	27622855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttacaagcagcggccgtaCaccttcctcttgcctagaaa	7	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	27622855	27622855	C	T	SNP	WDTC1	ENST00000319394	human	ensembl	69_37n	1	known	silent	c.912	p.Y304	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784	622	0	0	379	259	40.41	-	-	-	T	27622855	C	T	27622855	2	4	569	1	0	0	0	0	0	0	0	1	17439	489	17	4		4	WDTC1	1	27622855	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1847502	27622855	221627766	18	49974										
WDTC1	0	genome.wustl.edu	37	chr1	27632974	27632974	+	RNA	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttgtcttccccaccacccTtttttttcatttcccctgtt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	27632974	27632974	T	-	DEL	WDTC1	ENST00000491239	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDTC1	HGNC	ENSG00000142784	22	0	0	11	7	38.89	-	-	-	-	27632974	T	-	27632974	6	5	569	0	1	1	0	1	0	0	0	0	17439	1624	56	0		0	WDTC1	1	27632974	RNA	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	10119	27632974	221617647	19	49975										
TRNAU1AP	0	genome.wustl.edu	37	chr1	28893900	28893900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactggggtctaagcctgtgCggctgagcgtggcaatccct	15	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	28893900	28893900	C	T	SNP	TRNAU1AP	ENST00000373830	human	ensembl	69_37n	1	known	missense	c.505	p.R169W	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	360	1	0.28	190	123	39.17	-	-	-	T	28893900	C	T	28893900	3	4	569	1	0	0	0	0	1	0	0	0	16668	759	27	1	527	1	TRNAU1AP	1	28893900	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1260926	28893900	220356721	20	49976										
GMEB1	0	genome.wustl.edu	37	chr1	29041386	29041386	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccacataggacccttttttAaaaaaaaaaaaacaaaatct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	29041386	29041386	A	-	DEL	GMEB1	ENST00000480454	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419	9	0	0	6	5	45.45	-	-	-	-	29041386	A	-	29041386	6	5	569	0	1	1	0	1	0	0	0	0	6539	377	13	0		0	GMEB1	1	29041386	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	147486	29041386	220209235	21	49977										
OPRD1	0	genome.wustl.edu	37	chr1	29189472	29189472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacgcgcatggtgctggtgGttgtgggcgccttcgtggtg	18	9	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	29189472	29189472	G	A	SNP	OPRD1	ENST00000234961	human	ensembl	69_37n	1	known	missense	c.796	p.V266I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_Somatstn_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329	63	0	0	36	26	41.94	-	-	-	A	29189472	G	A	29189472	3	1	569	1	0	0	0	0	1	0	0	0	10957	1261	44	4	806	4	OPRD1	1	29189472	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	148086	29189472	220061149	22	49978										
PTPRU	0	genome.wustl.edu	37	chr1	29609285	29609285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccattgaccttcgaggcgGcgctggcccgaggcctggtg	16	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	29609285	29609285	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.1966	p.A656T	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	61	0	0	53	35	39.77	-	-	-	A	29609285	G	A	29609285	3	1	569	1	0	0	0	0	1	0	0	0	12896	1203	42	4	2012	4	PTPRU	1	29609285	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	419813	29609285	219641336	23	49979										
SDC3	0	genome.wustl.edu	37	chr1	31350004	31350004	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtctcaatgcccgactcctGctcgaagtctgagggggtgg	14	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	31350004	31350004	G	A	SNP	SDC3	ENST00000339394	human	ensembl	69_37n	-1	known	nonsense	c.265	p.Q89*	1.000	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512	43	0	0	15	13	46.43	-	-	-	A	31350004	G	A	31350004	4	1	569	1	0	0	0	0	0	1	0	0	14041	1328	46	4	1075	4	SDC3	1	31350004	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1740719	31350004	217900617	24	49980										
BSDC1	0	genome.wustl.edu	37	chr1	32849565	32849565	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagtcagataaccctttctTcatcttctctgttgctcctg	6	12	5	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	32849565	32849565	T	C	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	missense	c.274	p.K92E	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	266	0	0	189	109	36.45	-	-	-	C	32849565	T	C	32849565	3	2	569	1	0	0	0	0	1	0	0	0	1536	1792	62	5	1101	5	BSDC1	1	32849565	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1499561	32849565	216401056	25	49981										
KIAA0319L	0	genome.wustl.edu	37	chr1	35906469	35906469	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgcgaagtgggtcctggagGcattttgtccagtgcagctc	14	10	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	35906469	35906469	G	A	SNP	KIAA0319L	ENST00000485551	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	35	0	0	16	7	30.43	-	-	-	A	35906469	G	A	35906469	1	1	569	0	1	0	0	0	0	0	0	0	8221	1218	42	4		4	KIAA0319L	1	35906469	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3056904	35906469	213344152	26	49982										
EIF2C3	0	genome.wustl.edu	37	chr1	36479150	36479150	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atattatggacacagtgaagAaaaaaaagagggttctaatg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	36479150	36479150	A	-	DEL	EIF2C3	ENST00000479395	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EIF2C3	HGNC	ENSG00000126070	35	0	0	18	14	41.18	-	-	-	-	36479150	A	-	36479150	6	5	569	0	1	1	0	1	0	0	0	0	5042	261	9	0		0	EIF2C3	1	36479150	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	572681	36479150	212771471	27	49983										
INPP5B	0	genome.wustl.edu	37	chr1	38409556	38409556	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccatcctccggtgcgtataGaggaagagactaagggcagg	15	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	38409556	38409556	G	T	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	silent	c.162	p.L54	0.999	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	112	0	0	79	53	40.15	-	-	-	T	38409556	G	T	38409556	2	4	569	1	0	0	0	0	0	0	0	1	7809	929	33	2		2	INPP5B	1	38409556	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1930406	38409556	210841065	28	49984										
PPIE	0	genome.wustl.edu	37	chr1	40205846	40205846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttatttgcaggtggactggCagaggaagtggacgacaaag	15	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	40205846	40205846	C	T	SNP	PPIE	ENST00000324379	human	ensembl	69_37n	1	known	missense	c.41	p.A14V	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_Cyclophilin-type_PPIase_E,pfscan_RRM_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pirsf_Cyclophilin-type_PPIase_E,prints_Cyclophilin-like_PPIase_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	PPIE	HGNC	ENSG00000084072	501	1	0.2	366	213	36.66	-	-	-	T	40205846	C	T	40205846	3	4	569	1	0	0	0	0	1	0	0	0	12399	710	25	4	47	4	PPIE	1	40205846	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1796290	40205846	209044775	29	49985										
RPS8	0	genome.wustl.edu	37	chr1	45243287	45243287	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaatttctcctgtgagcaggTtgtactcgtaaaacaaggat	9	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	45243287	45243287	T	G	SNP	RPS8	ENST00000396651	human	ensembl	69_37n	1	known	missense	c.213	p.C71W	1.000	pfam_Ribosomal_S8e/biogenesis_NSA2,tigrfam_Ribosomal_S8e	pfam_Ribosomal_S8e/biogenesis_NSA2,tigrfam_Ribosomal_S8e	-	no_errors	RPS8	HGNC	ENSG00000142937	172	0	0	112	69	38.12	-	-	-	G	45243287	T	G	45243287	3	3	569	1	0	0	0	0	1	0	0	0	13747	1739	60	5	227	5	RPS8	1	45243287	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5037441	45243287	204007334	30	49986										
LRRC41	0	genome.wustl.edu	37	chr1	46744490	46744491	+	RNA	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagcccatgcttcagccccINStgcaagctgatggtaccgag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	46744490	46744491	-	A	INS	LRRC41	ENST00000472710	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.972:0.977	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128	29	0	0	29	11	27.5	-	-	-	A	46744491	-	A	46744490	6	5	569	0	1	1	1	0	0	0	0	0	9065	696	24	0		0	LRRC41	1	46744490	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1501203	46744490	202506131	31	49987										
CYP4A11	0	genome.wustl.edu	37	chr1	47406941	47406941	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcccgaagagccagtgggaGggagggcacgggaactgctg	19	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	47406941	47406941	G	T	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	silent	c.165	p.P55	0.022	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	88	0	0	43	38	46.91	-	-	-	T	47406941	G	T	47406941	2	4	569	1	0	0	0	0	0	0	0	1	4214	987	35	4		4	CYP4A11	1	47406941	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	662451	47406941	201843680	32	49988										
SLC1A7	0	genome.wustl.edu	37	chr1	53608111	53608111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccccgtgccaagatggcaTgcggcaccatggtgagcctg	13	14	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	53608111	53608111	T	C	SNP	SLC1A7	ENST00000371494	human	ensembl	69_37n	-1	known	missense	c.11	p.H4R	0.204	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383	77	0	0	58	26	30.95	-	-	-	C	53608111	T	C	53608111	3	2	569	1	0	0	0	0	1	0	0	0	14526	1464	51	5	1715	5	SLC1A7	1	53608111	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6201170	53608111	195642510	33	49989										
TMEM59	0	genome.wustl.edu	37	chr1	54507477	54507477	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtactggatttctggcttaGactaaaataataatgaaagc	8	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	54507477	54507477	G	T	SNP	TMEM59	ENST00000234831	human	ensembl	69_37n	-1	known	missense	c.545	p.S182Y	1.000	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59,superfamily_Prot_inh_Kunz-m	-	no_errors	TMEM59	HGNC	ENSG00000116209	303	0	0	213	119	35.84	-	-	-	T	54507477	G	T	54507477	3	4	569	1	0	0	0	0	1	0	0	0	16280	956	33	2	442	2	TMEM59	1	54507477	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	899366	54507477	194743144	34	49990										
MYSM1	0	genome.wustl.edu	37	chr1	59156023	59156023	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgattttacctcttcatgtaTtttttatcatcttccttttg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	59156023	59156023	T	-	DEL	MYSM1	ENST00000472487	human	ensembl	69_37n	-1	known	frame_shift_del	c.285	p.K95fs	0.822	NULL	pfam_SWIRM,pfam_JAB1_Mov34_MPN_PAD1,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB1_Mov34_MPN_PAD1,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601	251	0	0	198	103	33.99	-	-	-	-	59156023	T	-	59156023	7	5	569	1	0	1	0	1	0	0	0	0	10173	1490	52	0	2269	0	MYSM1	1	59156023	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	4648546	59156023	190094598	35	49991										
CACHD1	0	genome.wustl.edu	37	chr1	65143941	65143942	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccccagaaagaatgcttcINSggggggattgtgggagccaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	65143941	65143942	-	G	INS	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	frame_shift_ins	c.3192_3193	p.I1066fs	0.426:1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	314	0	0	223	74	24.92	-	-	-	G	65143942	-	G	65143941	7	5	569	1	0	1	1	0	0	0	0	0	2562	883	31	0	3129	0	CACHD1	1	65143941	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	5987918	65143941	184106680	36	49992										
WLS	0	genome.wustl.edu	37	chr1	68624864	68624864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctttcatgggccatttcaGtccactcagcaaacgcgtca	7	14	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	68624864	68624864	G	A	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.446	p.T149I	0.969	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	213	1	0.47	171	94	35.47	-	-	-	A	68624864	G	A	68624864	3	1	569	1	0	0	0	0	1	0	0	0	17473	1029	36	4	1345	4	WLS	1	68624864	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3480923	68624864	180625757	37	49993										
RABGGTB	0	genome.wustl.edu	37	chr1	76256965	76256965	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgatttgatctatttttatTgtaggagaaattgacacaag	8	3	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	76256965	76256965	T	C	SNP	RABGGTB	ENST00000467748	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	549	0	0	371	246	39.87	-	-	-	C	76256965	T	C	76256965	1	2	569	0	1	0	0	0	0	0	0	0	13051	1827	63	5		5	RABGGTB	1	76256965	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7632101	76256965	172993656	38	49994										
ST6GALNAC3	0	genome.wustl.edu	37	chr1	76779584	76779584	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaatttcccattgctactaaActgctttggacaacctggta	7	10	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	76779584	76779584	A	G	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	69_37n	1	known	missense	c.113	p.N38S	1.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005	551	0	0	362	244	40.26	-	-	-	G	76779584	A	G	76779584	3	3	569	1	0	0	0	0	1	0	0	0	15316	43	2	5	119	5	ST6GALNAC3	1	76779584	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	522619	76779584	172471037	39	49995										
IFI44	0	genome.wustl.edu	37	chr1	79116277	79116277	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttaaagacaatggaaaatCttggacttgctcaaaattgt	7	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	79116277	79116277	C	A	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	missense	c.397	p.L133I	0.010	pfam_TLDc	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	44	0	0	34	23	40.35	-	-	-	A	79116277	C	A	79116277	3	1	569	1	0	0	0	0	1	0	0	0	7571	913	32	2	399	2	IFI44	1	79116277	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2336693	79116277	170134344	40	49996										
MCOLN2	0	genome.wustl.edu	37	chr1	85403543	85403543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttttggcagtgaggcctgCattgttaaaatcagcacctg	10	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	85403543	85403543	C	T	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1230	p.M410I	1.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	261	0	0	159	92	36.65	-	-	-	T	85403543	C	T	85403543	3	4	569	1	0	0	0	0	1	0	0	0	9467	710	25	4	486	4	MCOLN2	1	85403543	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6287266	85403543	163847078	41	49997										
MCOLN2	0	genome.wustl.edu	37	chr1	85405343	85405343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcccactggtcggtgtcacAcacaggccgcttgtacttct	9	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	85405343	85405343	A	G	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1003	p.C335R	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	200	0	0	150	87	36.4	-	-	-	G	85405343	A	G	85405343	3	3	569	1	0	0	0	0	1	0	0	0	9467	159	6	5	721	5	MCOLN2	1	85405343	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1800	85405343	163845278	42	49998										
COL24A1	0	genome.wustl.edu	37	chr1	86590679	86590679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaattcaccttctttccttAgatcaaggtgattatccaca	4	10	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	86590679	86590679	A	G	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.1340	p.L447P	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	336	2	0.59	237	121	33.8	-	-	-	G	86590679	A	G	86590679	3	3	569	1	0	0	0	0	1	0	0	0	3713	420	15	5	4036	5	COL24A1	1	86590679	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1185336	86590679	162659942	43	49999										
ARHGAP29	0	genome.wustl.edu	37	chr1	94649793	94649793	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgcattccattttccaaagCttgacacaatttttcagttt	5	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	94649793	94649793	C	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.2161	p.A721P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	222	0	0	181	96	34.66	-	-	-	G	94649793	C	G	94649793	3	3	569	1	0	0	0	0	1	0	0	0	880	797	28	4	1644	4	ARHGAP29	1	94649793	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8059114	94649793	154600828	44	50000										
ABCD3	0	genome.wustl.edu	37	chr1	94933479	94933479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctggtttattttagacagGttacttggtacttattgctg	9	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	94933479	94933479	G	A	SNP	ABCD3	ENST00000454898	human	ensembl	69_37n	1	known	missense	c.323	p.G108D	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528	480	0	0	354	216	37.89	-	-	-	A	94933479	G	A	94933479	3	1	569	1	0	0	0	0	1	0	0	0	62	1261	44	4	265	4	ABCD3	1	94933479	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	283686	94933479	154317142	45	50001										
CNN3	0	genome.wustl.edu	37	chr1	95363452	95363452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcttccgttgtgaatgacaGgttctgtaggagcagcacag	14	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	95363452	95363452	G	T	SNP	CNN3	ENST00000370206	human	ensembl	69_37n	-1	known	missense	c.836	p.P279H	0.999	NULL	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN3	HGNC	ENSG00000117519	563	0	0	336	222	39.78	-	-	-	T	95363452	G	T	95363452	3	4	569	1	0	0	0	0	1	0	0	0	3641	1000	35	4	157	4	CNN3	1	95363452	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	429973	95363452	153887169	46	50002										
LPPR4	0	genome.wustl.edu	37	chr1	99771829	99771829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtaacaacagcatgcctggaGggccaagagtgtccattcag	12	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	99771829	99771829	G	T	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	missense	c.1555	p.G519W	0.999	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	102	0	0	53	31	36.9	-	-	-	T	99771829	G	T	99771829	3	4	569	1	0	0	0	0	1	0	0	0	8993	1000	35	4	1581	4	LPPR4	1	99771829	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4408377	99771829	149478792	47	50003										
SLC6A17	0	genome.wustl.edu	37	chr1	110709700	110709700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcaggcggcaagcagaaggCggtggaggaggagctggatg	22	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	110709700	110709700	C	T	SNP	SLC6A17	ENST00000331565	human	ensembl	69_37n	1	known	missense	c.149	p.A50V	0.233	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	197	0	0	103	93	46.5	-	-	-	T	110709700	C	T	110709700	3	4	569	1	0	0	0	0	1	0	0	0	14769	768	27	1	151	1	SLC6A17	1	110709700	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	10937871	110709700	138540921	48	50004										
PPM1J	0	genome.wustl.edu	37	chr1	113253100	113253100	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctgctgtggtcattaggcTcataggccgacagcaccctg	11	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	113253100	113253100	T	G	SNP	PPM1J	ENST00000309276	human	ensembl	69_37n	-1	known	missense	c.1352	p.E451A	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1J	HGNC	ENSG00000155367	330	0	0	169	120	41.52	-	-	-	G	113253100	T	G	113253100	3	3	569	1	0	0	0	0	1	0	0	0	12419	1551	54	5	173	5	PPM1J	1	113253100	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2543400	113253100	135997521	49	50005										
PHTF1	0	genome.wustl.edu	37	chr1	114243489	114243489	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagtgaggccagacgcaatAaaaaaagtagtaaagctgtt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	114243489	114243489	A	-	DEL	PHTF1	ENST00000369604	human	ensembl	69_37n	-1	known	frame_shift_del	c.1973	p.L658fs	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793	298	1	0.33	199	119	37.07	-	-	-	-	114243489	A	-	114243489	7	5	569	1	0	1	0	1	0	0	0	0	11936	372	13	0	331	0	PHTF1	1	114243489	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	990389	114243489	135007132	50	50006										
ATP1A1	0	genome.wustl.edu	37	chr1	116942043	116942043	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctccccaccccttcccaggTtcctgccatctccctggctt	5	21	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	116942043	116942043	T	C	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.2450	p.V817A	0.997	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	195	0	0	127	61	32.45	-	-	-	C	116942043	T	C	116942043	3	2	569	1	0	0	0	0	1	0	0	0	1132	1739	60	5	2536	5	ATP1A1	1	116942043	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2698554	116942043	132308578	51	50007										
TBX15	0	genome.wustl.edu	37	chr1	119441696	119441696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcttcgaaggtgagtgtgcGcacaggaggtctccagaatg	15	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	119441696	119441696	G	A	SNP	TBX15	ENST00000369429	human	ensembl	69_37n	-1	known	missense	c.979	p.R327C	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX15	HGNC	ENSG00000092607	420	2	0.47	324	183	36.09	-	-	-	A	119441696	G	A	119441696	3	1	569	1	0	0	0	0	1	0	0	0	15747	1087	38	1	837	1	TBX15	1	119441696	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2499653	119441696	129808925	52	50008										
PRKAB2	0	genome.wustl.edu	37	chr1	146643618	146643618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcgtccgtactccccaccaTgatcttgtgctccttccccg	7	18	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	146643618	146643618	T	C	SNP	PRKAB2	ENST00000254101	human	ensembl	69_37n	-1	known	missense	c.106	p.M36V	1.000	NULL	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791	30	0	0	86	13	13.13	-	-	-	C	146643618	T	C	146643618	3	2	569	1	0	0	0	0	1	0	0	0	12577	1464	51	5	740	5	PRKAB2	1	146643618	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	27201922	146643618	102607003	53	50009										
BCL9	0	genome.wustl.edu	37	chr1	147096678	147096678	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcatgatccccccacagaTgaggccccggggcatggctg	12	15	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	147096678	147096678	T	C	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.4199	p.M1400T	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	53	0	0	104	23	18.11	-	-	-	C	147096678	T	C	147096678	3	2	569	1	0	0	0	0	1	0	0	0	1385	1464	51	5	4225	5	BCL9	1	147096678	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	453060	147096678	102153943	54	50010										
GJA5	0	genome.wustl.edu	37	chr1	147231241	147231241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcagcagctgtgcccagcaCgagcatacggaatatgaaga	11	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	147231241	147231241	C	T	SNP	GJA5	ENST00000271348	human	ensembl	69_37n	-1	known	missense	c.106	p.V36M	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140	213	0	0	397	82	17.12	-	-	-	T	147231241	C	T	147231241	3	4	569	1	0	0	0	0	1	0	0	0	6456	536	19	1	974	1	GJA5	1	147231241	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	134563	147231241	102019380	55	50011										
FCGR1A	0	genome.wustl.edu	37	chr1	149761830	149761830	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactctgggttatactggtgCgaggctgccacagaggatgg	16	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	149761830	149761830	C	T	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	silent	c.780	p.C260	0.754	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	102	0	0	169	30	15.08	-	-	-	T	149761830	C	T	149761830	2	4	569	1	0	0	0	0	0	0	0	1	5825	776	27	1		1	FCGR1A	1	149761830	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2530589	149761830	99488791	56	50012										
FCGR1A	0	genome.wustl.edu	37	chr1	149762831	149762831	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgtctggtttcatgtccttTtctatctggcagtgggaata	10	8	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	149762831	149762831	T	C	SNP	FCGR1A	ENST00000369168	human	ensembl	69_37n	1	known	missense	c.883	p.F295L	0.093	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR1A	HGNC	ENSG00000150337	226	1	0.44	449	82	15.41	-	-	-	C	149762831	T	C	149762831	3	2	569	1	0	0	0	0	1	0	0	0	5825	1841	64	5	905	5	FCGR1A	1	149762831	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1001	149762831	99487790	57	50013										
MTMR11	0	genome.wustl.edu	37	chr1	149907310	149907310	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccctcattttcctaccctgGcagccccaaccccttctagg	6	19	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	149907310	149907310	G	T	SNP	MTMR11	ENST00000479272	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914	137	0	0	213	62	22.55	-	-	-	T	149907310	G	T	149907310	1	4	569	0	1	0	0	0	0	0	0	0	10012	1218	42	4		4	MTMR11	1	149907310	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	144479	149907310	99343311	58	50014										
CTSK	0	genome.wustl.edu	37	chr1	150779186	150779186	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgttatattgcttcctgtgGgtcttcttccatagctccca	7	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	150779186	150779186	G	T	SNP	CTSK	ENST00000271651	human	ensembl	69_37n	-1	known	silent	c.96	p.T32	0.848	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,pfam_Peptidase_C1B,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSK	HGNC	ENSG00000143387	454	0	0	1003	206	17.04	-	-	-	T	150779186	G	T	150779186	2	4	569	1	0	0	0	0	0	0	0	1	4069	1219	43	4		4	CTSK	1	150779186	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	871876	150779186	98471435	59	50015										
ZNF687	0	genome.wustl.edu	37	chr1	151260658	151260658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctggacctctggccttgCctgccttgggcaagggtgag	14	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	151260658	151260658	C	T	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.1891	p.P631S	0.006	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	36	0	0	52	13	20	-	-	-	T	151260658	C	T	151260658	3	4	569	1	0	0	0	0	1	0	0	0	18188	739	26	4	1893	4	ZNF687	1	151260658	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	481472	151260658	97989963	60	50016										
PI4KB	0	genome.wustl.edu	37	chr1	151280086	151280086	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggacaacagcctgtgtgtgGggtacacggaccacgtggtg	16	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	151280086	151280086	G	T	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	silent	c.1182	p.P394	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	222	1	0.45	347	90	20.59	-	-	-	T	151280086	G	T	151280086	2	4	569	1	0	0	0	0	0	0	0	1	11948	1219	43	4		4	PI4KB	1	151280086	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	19428	151280086	97970535	61	50017										
CGN	0	genome.wustl.edu	37	chr1	151491178	151491178	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgcgtgtgcagggaatcgcTgggcagccctttgtggtgct	17	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	151491178	151491178	T	C	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	silent	c.183	p.A61	0.049	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	225	0	0	396	75	15.92	-	-	-	C	151491178	T	C	151491178	2	2	569	1	0	0	0	0	0	0	0	1	3332	1567	55	5		5	CGN	1	151491178	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	211092	151491178	97759443	62	50018										
CGN	0	genome.wustl.edu	37	chr1	151493130	151493130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtgagcttacccgaaaagTggaggagctacagcgaaagc	15	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	151493130	151493130	T	C	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.1103	p.V368A	0.997	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	321	1	0.31	593	120	16.6	-	-	-	C	151493130	T	C	151493130	3	2	569	1	0	0	0	0	1	0	0	0	3332	1696	59	5	1117	5	CGN	1	151493130	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1952	151493130	97757491	63	50019										
CGN	0	genome.wustl.edu	37	chr1	151495913	151495913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcattcccttttacagaagCggcagaagctagagccatcc	8	13	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	151495913	151495913	C	T	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.1144	p.R382W	0.999	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	129	0	0	215	54	20	-	-	-	T	151495913	C	T	151495913	3	4	569	1	0	0	0	0	1	0	0	0	3332	759	27	1	1162	1	CGN	1	151495913	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2783	151495913	97754708	64	50020										
SPRR1A	0	genome.wustl.edu	37	chr1	152957715	152957715	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacatttgaagcatgaattcTcagcagcagaagcagccttg	9	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	152957715	152957715	T	A	SNP	SPRR1A	ENST00000307122	human	ensembl	69_37n	1	known	silent	c.9	p.S3	0.990	NULL	pfam_Cornifin	-	no_errors	SPRR1A	HGNC	ENSG00000169474	244	0	0	412	95	18.66	-	-	-	A	152957715	T	A	152957715	2	1	569	1	0	0	0	0	0	0	0	1	15186	1538	54	5		5	SPRR1A	1	152957715	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1461802	152957715	96292906	65	50021										
S100A14	0	genome.wustl.edu	37	chr1	153588378	153588378	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtgagagttctgttgtccTatagctggccccagaggagc	14	9	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	153588378	153588378	T	C	SNP	S100A14	ENST00000368700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.697	-	-	-	no_errors	S100A14	HGNC	ENSG00000189334	204	0	0	436	84	16.12	-	-	-	C	153588378	T	C	153588378	1	2	569	0	1	0	0	0	0	0	0	0	13862	1537	53	5		5	S100A14	1	153588378	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	630663	153588378	95662243	66	50022										
ILF2	0	genome.wustl.edu	37	chr1	153634875	153634875	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaggagtgaagggaatgtcaCtcctgagtttccatgctttc	11	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	153634875	153634875	C	A	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	missense	c.1170	p.E390D	1.000	NULL	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	641	0	0	1129	248	18.01	-	-	-	A	153634875	C	A	153634875	3	1	569	1	0	0	0	0	1	0	0	0	7765	564	20	4	6	4	ILF2	1	153634875	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	46497	153634875	95615746	67	50023										
GATAD2B	0	genome.wustl.edu	37	chr1	153784600	153784600	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctgctgctgtaatcgctgTtcaatttcctgttgggagtc	11	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	153784600	153784600	T	C	SNP	GATAD2B	ENST00000368655	human	ensembl	69_37n	-1	known	silent	c.1428	p.E476	1.000	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2B	HGNC	ENSG00000143614	148	1	0.67	327	83	20.15	-	-	-	C	153784600	T	C	153784600	2	2	569	1	0	0	0	0	0	0	0	1	6311	1722	60	5		5	GATAD2B	1	153784600	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	149725	153784600	95466021	68	50024										
SLC39A1	0	genome.wustl.edu	37	chr1	153935178	153935178	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaccaggagctctggctctCcccagggccccatgatgctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	153935178	153935178	C	-	DEL	SLC39A1	ENST00000310483	human	ensembl	69_37n	-1	known	frame_shift_del	c.14	p.G5fs	0.989	NULL	pfam_ZIP	-	no_errors	SLC39A1	HGNC	ENSG00000143570	62	0	0	86	15	14.56	-	-	-	-	153935178	C	-	153935178	7	5	569	1	0	1	0	1	0	0	0	0	14701	855	30	0	972	0	SLC39A1	1	153935178	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	150578	153935178	95315443	69	50025										
CREB3L4	0	genome.wustl.edu	37	chr1	153945733	153945733	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtccaggagctggagaggcAcaacatgtgagtgaaagcat	14	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	153945733	153945733	A	G	SNP	CREB3L4	ENST00000271889	human	ensembl	69_37n	1	known	missense	c.806	p.H269R	1.000	pfam_bZIP_1,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L4	HGNC	ENSG00000143578	196	0	0	378	77	16.85	-	-	-	G	153945733	A	G	153945733	3	3	569	1	0	0	0	0	1	0	0	0	3889	159	6	5	828	5	CREB3L4	1	153945733	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	10555	153945733	95304888	70	50026										
HAX1	0	genome.wustl.edu	37	chr1	154245925	154245926	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggttccatagtcctcagcaINScccccctgaggaatttggct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154245925	154245926	-	C	INS	HAX1	ENST00000483970	human	ensembl	69_37n	1	known	frame_shift_ins	c.167_168	p.E59fs	0.005:0.005	pirsf_HS1--assoc_X-1	pirsf_HS1--assoc_X-1	-	no_errors	HAX1	HGNC	ENSG00000143575	145	0	0	325	66	16.88	-	-	-	C	154245926	-	C	154245925	7	5	569	1	0	1	1	0	0	0	0	0	7026	159	6	0	173	0	HAX1	1	154245925	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	300192	154245925	95004696	71	50027										
HAX1	0	genome.wustl.edu	37	chr1	154248120	154248120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaccaagacctccagccctGgatgatgccttttccatcct	6	16	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154248120	154248120	G	A	SNP	HAX1	ENST00000483970	human	ensembl	69_37n	1	known	silent	c.807	p.L269	0.850	pirsf_HS1--assoc_X-1	pirsf_HS1--assoc_X-1	-	no_errors	HAX1	HGNC	ENSG00000143575	405	0	0	776	165	17.5	-	-	-	A	154248120	G	A	154248120	2	1	569	1	0	0	0	0	0	0	0	1	7026	1335	47	4		4	HAX1	1	154248120	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2195	154248120	95002501	72	50028										
ATP8B2	0	genome.wustl.edu	37	chr1	154320943	154320943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaccattgtgctcaccacaGtcgtctgcatcatgcccgtg	9	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154320943	154320943	G	A	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.3322	p.V1108I	0.792	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	113	0	0	199	37	15.68	-	-	-	A	154320943	G	A	154320943	3	1	569	1	0	0	0	0	1	0	0	0	1199	1029	36	4	3558	4	ATP8B2	1	154320943	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	72823	154320943	94929678	73	50029										
IL6R	0	genome.wustl.edu	37	chr1	154401730	154401730	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcgtgactctgacctgcccGggggtagagccggaagacaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154401730	154401730	G	-	DEL	IL6R	ENST00000368485	human	ensembl	69_37n	1	known	frame_shift_del	c.144	p.V50fs	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL6R	HGNC	ENSG00000160712	118	0	0	210	39	15.54	-	-	-	-	154401730	G	-	154401730	7	5	569	1	0	1	0	1	0	0	0	0	7756	1103	39	0	150	0	IL6R	1	154401730	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	80787	154401730	94848891	74	50030										
PYGO2	0	genome.wustl.edu	37	chr1	154931988	154931988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctggttgaagggttggctgGgaaagttcatgttgcctggg	18	5	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154931988	154931988	G	A	SNP	PYGO2	ENST00000368457	human	ensembl	69_37n	-1	known	missense	c.488	p.P163L	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO2	HGNC	ENSG00000163348	128	0	0	299	60	16.71	-	-	-	A	154931988	G	A	154931988	3	1	569	1	0	0	0	0	1	0	0	0	12947	1232	43	4	736	4	PYGO2	1	154931988	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	530258	154931988	94318633	75	50031										
FLAD1	0	genome.wustl.edu	37	chr1	154961214	154961214	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagaggaagaaggacccctgGaggaatgcttggcctacctg	14	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154961214	154961214	G	T	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	nonsense	c.1006	p.E336*	1.000	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	52	0	0	85	31	26.72	-	-	-	T	154961214	G	T	154961214	4	4	569	1	0	0	0	0	0	1	0	0	5966	1175	41	2	1087	2	FLAD1	1	154961214	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	29226	154961214	94289407	76	50032										
LENEP	0	genome.wustl.edu	37	chr1	154966118	154966118	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagcccctagcccaaacccTacccttcttcctcggagggg	8	18	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	154966118	154966118	T	C	SNP	LENEP	ENST00000368427	human	ensembl	69_37n	1	known	missense	c.35	p.L12P	0.592	NULL	NULL	-	no_errors	LENEP	HGNC	ENSG00000163352	115	1	0.86	193	40	17.17	-	-	-	C	154966118	T	C	154966118	3	2	569	1	0	0	0	0	1	0	0	0	8776	1522	53	5	37	5	LENEP	1	154966118	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4904	154966118	94284503	77	50033										
ADAM15	0	genome.wustl.edu	37	chr1	155035024	155035024	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagccggacttagggcttcaAgaggcgggcgtgccctctgg	16	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155035024	155035024	A	G	SNP	ADAM15	ENST00000461234	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	ADAM15	HGNC	ENSG00000143537	38	0	0	33	17	34	-	-	-	G	155035024	A	G	155035024	1	3	569	0	1	0	0	0	0	0	0	0	237	87	3	5		5	ADAM15	1	155035024	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	68906	155035024	94215597	78	50034										
TRIM46	0	genome.wustl.edu	37	chr1	155156289	155156289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaggtacgacccggacagcGggcacgacagcggtgccgag	17	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155156289	155156289	G	T	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1903	p.G635W	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	41	0	0	59	12	16.67	-	-	-	T	155156289	G	T	155156289	3	4	569	1	0	0	0	0	1	0	0	0	16617	1116	39	3	1941	3	TRIM46	1	155156289	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	121265	155156289	94094332	79	50035										
RUSC1	0	genome.wustl.edu	37	chr1	155294982	155294982	+	RNA	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcagaaggtgaaggtggctGgggggaggctgttgggatga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155294982	155294982	G	-	DEL	RUSC1	ENST00000462780	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RUSC1	HGNC	ENSG00000160753	151	0	0	257	38	12.75	-	-	-	-	155294982	G	-	155294982	6	5	569	0	1	1	0	1	0	0	0	0	13836	1363	47	0		0	RUSC1	1	155294982	RNA	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	138693	155294982	93955639	80	50036										
RUSC1	0	genome.wustl.edu	37	chr1	155296415	155296415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caacaggatttttctccctgGcccgcggtggttgtccctcc	10	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155296415	155296415	G	A	SNP	RUSC1	ENST00000368352	human	ensembl	69_37n	1	known	missense	c.1906	p.A636T	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753	127	0	0	189	44	18.57	-	-	-	A	155296415	G	A	155296415	3	1	569	1	0	0	0	0	1	0	0	0	13836	1203	42	4	2063	4	RUSC1	1	155296415	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1433	155296415	93954206	81	50037										
ASH1L	0	genome.wustl.edu	37	chr1	155450676	155450676	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgaaggagtaatagtatgaAtgctggattcagaagtcaaa	11	4	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155450676	155450676	A	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1985	p.I662T	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	86	0	0	134	30	18.29	-	-	-	G	155450676	A	G	155450676	3	3	569	1	0	0	0	0	1	0	0	0	1045	101	4	5	7013	5	ASH1L	1	155450676	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	154261	155450676	93799945	82	50038										
DAP3	0	genome.wustl.edu	37	chr1	155701169	155701169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcccccgaggaattagcacTtgttcacaacttgaggaaaa	9	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155701169	155701169	T	G	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	missense	c.866	p.L289R	0.750	pfam_Ribosomal_S23/S29_mit	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	252	0	0	510	103	16.78	-	-	-	G	155701169	T	G	155701169	3	3	569	1	0	0	0	0	1	0	0	0	4266	1609	56	5	900	5	DAP3	1	155701169	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	250493	155701169	93549452	83	50039										
GON4L	0	genome.wustl.edu	37	chr1	155724207	155724207	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctccgccttttgctcttctTcagcttggaatctggacctc	8	14	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155724207	155724207	T	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.5590	p.K1864Q	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	204	0	0	382	60	13.57	-	-	-	G	155724207	T	G	155724207	3	3	569	1	0	0	0	0	1	0	0	0	6621	1792	62	5	1152	5	GON4L	1	155724207	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	23038	155724207	93526414	84	50040										
GON4L	0	genome.wustl.edu	37	chr1	155735933	155735933	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgtctcacatatggctttcGaaacttagaaggggcaaggg	12	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155735933	155735933	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	nonsense	c.3331	p.R1111*	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	395	0	0	624	146	18.91	-	-	-	A	155735933	G	A	155735933	4	1	569	1	0	0	0	0	0	1	0	0	6621	1066	37	1	3556	1	GON4L	1	155735933	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	11726	155735933	93514688	85	50041										
GON4L	0	genome.wustl.edu	37	chr1	155744917	155744917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctgaaacttggggttgtaCtgatggtgaagggcgatgga	17	4	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155744917	155744917	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.2226	p.Q742	0.043	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	482	1	0.21	948	191	16.77	-	-	-	T	155744917	C	T	155744917	2	4	569	1	0	0	0	0	0	0	0	1	6621	564	20	4		4	GON4L	1	155744917	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8984	155744917	93505704	86	50042										
KIAA0907	0	genome.wustl.edu	37	chr1	155891696	155891696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgattcacaaatctagagTattcagcatgaacctgaaag	7	8	4	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	155891696	155891696	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	missense	c.968	p.Y323C	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	216	1	0.46	366	72	16.36	-	-	-	C	155891696	T	C	155891696	3	2	569	1	0	0	0	0	1	0	0	0	8251	1638	57	5	900	5	KIAA0907	1	155891696	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	146779	155891696	93358925	87	50043										
RHBG	0	genome.wustl.edu	37	chr1	156354347	156354348	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagctaccctttctggactINSccccccccagactcccagca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	156354347	156354348	-	C	INS	RHBG	ENST00000400992	human	ensembl	69_37n	1	known	frame_shift_ins	c.1168_1169	p.R393fs	0.006:0.723	superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	251	1	0.4	399	64	13.82	-	-	-	C	156354348	-	C	156354347	7	5	569	1	0	1	1	0	0	0	0	0	13408	1551	54	0	1298	0	RHBG	1	156354347	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	462651	156354347	92896274	88	50044										
BCAN	0	genome.wustl.edu	37	chr1	156618499	156618499	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcctggaccactgcagcccAgggtggctagctgatggcag	16	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	156618499	156618499	A	G	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	silent	c.909	p.P303	0.001	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	45	0	0	67	16	19.28	-	-	-	G	156618499	A	G	156618499	2	3	569	1	0	0	0	0	0	0	0	1	1349	175	7	5		5	BCAN	1	156618499	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	264152	156618499	92632122	89	50045										
BCAN	0	genome.wustl.edu	37	chr1	156626738	156626738	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tatgtgccgcaggcctccgcTtctgcaaccccggctgggac	12	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	156626738	156626738	T	G	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.2059	p.F687V	0.197	prints_AntifreezeII	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	41	0	0	30	81	72.97	-	-	-	G	156626738	T	G	156626738	3	3	569	1	0	0	0	0	1	0	0	0	1349	1609	56	5	2167	5	BCAN	1	156626738	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	8239	156626738	92623883	90	50046										
SH2D2A	0	genome.wustl.edu	37	chr1	156786539	156786539	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatcccagagcagggtgtgtGtatgtgttccggaaaggtgt	16	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	156786539	156786539	G	A	SNP	SH2D2A	ENST00000495306	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH2D2A	HGNC	ENSG00000027869	270	1	0.37	527	85	13.84	-	-	-	A	156786539	G	A	156786539	1	1	569	0	1	0	0	0	0	0	0	0	14320	1392	48	4		4	SH2D2A	1	156786539	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	159801	156786539	92464082	91	50047										
FCRL5	0	genome.wustl.edu	37	chr1	157490960	157490961	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctagggtgacatcctcatgINSaaaaaaccggtacaggatca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	157490960	157490961	-	A	INS	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2362_2361	p.H787fs	0.064:0.076	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	66	0	0	137	21	13.29	-	-	-	A	157490961	-	A	157490960	7	5	569	1	0	1	1	0	0	0	0	0	5844	1290	45	0	599	0	FCRL5	1	157490960	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	704421	157490960	91759661	92	50048										
FCRL2	0	genome.wustl.edu	37	chr1	157737074	157737074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggcccccaggccgttgttgGcctcacaggagtagtttcca	13	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	157737074	157737074	G	A	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	missense	c.1109	p.A370V	0.079	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	94	0	0	191	43	18.38	-	-	-	A	157737074	G	A	157737074	3	1	569	1	0	0	0	0	1	0	0	0	5841	1203	42	4	445	4	FCRL2	1	157737074	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	246114	157737074	91513547	93	50049										
FCRL2	0	genome.wustl.edu	37	chr1	157738283	157738283	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtaatatttgccggcatcActctctttcacagctgggat	8	11	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	157738283	157738283	A	G	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	silent	c.804	p.S268	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	386	3	0.77	800	125	13.34	-	-	-	G	157738283	A	G	157738283	2	3	569	1	0	0	0	0	0	0	0	1	5841	156	6	5		5	FCRL2	1	157738283	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1209	157738283	91512338	94	50050										
OR10X1	0	genome.wustl.edu	37	chr1	158548962	158548962	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccctcagctgaagggatcCtgaggacagtagaaataatg	12	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	158548962	158548962	C	A	SNP	OR10X1	ENST00000368150	human	ensembl	69_37n	-1	known	missense	c.728	p.R243M	0.138	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400	194	1	0.51	426	99	18.79	-	-	-	A	158548962	C	A	158548962	3	1	569	1	0	0	0	0	1	0	0	0	10995	681	24	4	247	4	OR10X1	1	158548962	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	810679	158548962	90701659	95	50051										
SPTA1	0	genome.wustl.edu	37	chr1	158644189	158644189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccagtctcatcagcagatTgaaatcggtcatcgtaagag	10	9	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	158644189	158644189	T	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1280	p.Q427R	0.388	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	287	1	0.35	476	111	18.91	-	-	-	C	158644189	T	C	158644189	3	2	569	1	0	0	0	0	1	0	0	0	15207	1812	63	5	6151	5	SPTA1	1	158644189	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	95227	158644189	90606432	96	50052										
OR6K2	0	genome.wustl.edu	37	chr1	158670002	158670002	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgataaagccacaaacacaGcaacttaaagtcagttgggt	9	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	158670002	158670002	G	T	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	nonsense	c.441	p.C147*	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	237	0	0	470	102	17.83	-	-	-	T	158670002	G	T	158670002	4	4	569	1	0	0	0	0	0	1	0	0	11275	963	34	4	537	4	OR6K2	1	158670002	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	25813	158670002	90580619	97	50053										
OR6K3	0	genome.wustl.edu	37	chr1	158687481	158687481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaacctgcagagagttgaGcacagagccggggggtcatg	17	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	158687481	158687481	G	A	SNP	OR6K3	ENST00000368146	human	ensembl	69_37n	-1	known	missense	c.473	p.A158V	0.303	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757	223	0	0	386	88	18.57	-	-	-	A	158687481	G	A	158687481	3	1	569	1	0	0	0	0	1	0	0	0	11276	971	34	4	524	4	OR6K3	1	158687481	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	17479	158687481	90563140	98	50054										
IFI16	0	genome.wustl.edu	37	chr1	158985711	158985711	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagaaggaagtggatgctacTtcacctgcaccctccacaag	9	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	158985711	158985711	T	C	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	silent	c.315	p.T105	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	145	0	0	317	66	17.23	-	-	-	C	158985711	T	C	158985711	2	2	569	1	0	0	0	0	0	0	0	1	7565	1596	56	5		5	IFI16	1	158985711	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	298230	158985711	90264910	99	50055										
IFI16	0	genome.wustl.edu	37	chr1	159002342	159002342	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaaacaaacccgagaaacaAtgaccccaagagcatgaagc	7	11	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	159002342	159002342	A	G	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.1190	p.N397S	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	219	1	0.45	409	88	17.71	-	-	-	G	159002342	A	G	159002342	3	3	569	1	0	0	0	0	1	0	0	0	7565	101	4	5	1212	5	IFI16	1	159002342	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	16631	159002342	90248279	100	50056										
IGSF9	0	genome.wustl.edu	37	chr1	159904599	159904599	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgttcttggggggcaccacGatgactgggggtcctgtggg	18	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	159904599	159904599	G	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	silent	c.687	p.I229	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	145	0	0	290	64	17.98	-	-	-	A	159904599	G	A	159904599	2	1	569	1	0	0	0	0	0	0	0	1	7659	1048	37	1		1	IGSF9	1	159904599	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	902257	159904599	89346022	101	50057										
ATP1A2	0	genome.wustl.edu	37	chr1	160093075	160093075	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccctcacaccacctcccacaAcccctgagtgggtcaagttc	6	19	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	160093075	160093075	A	G	SNP	ATP1A2	ENST00000361216	human	ensembl	69_37n	1	known	missense	c.250	p.T84A	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A2	HGNC	ENSG00000018625	190	1	0.52	361	81	17.96	-	-	-	G	160093075	A	G	160093075	3	3	569	1	0	0	0	0	1	0	0	0	1133	43	2	5	264	5	ATP1A2	1	160093075	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	188476	160093075	89157546	102	50058										
ATP1A4	0	genome.wustl.edu	37	chr1	160124898	160124898	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacccaatactgttaccccaCcccccaccactccagaatgg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	160124898	160124898	C	-	DEL	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	frame_shift_del	c.271	p.T93fs	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	215	0	0	463	67	12.41	-	-	-	-	160124898	C	-	160124898	7	5	569	1	0	1	0	1	0	0	0	0	1135	507	18	0	281	0	ATP1A4	1	160124898	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	31823	160124898	89125723	103	50059										
SLAMF6	0	genome.wustl.edu	37	chr1	160458909	160458909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagtgactgaagcatacacaGtgttgttcgttggagacact	12	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	160458909	160458909	G	T	SNP	SLAMF6	ENST00000368057	human	ensembl	69_37n	-1	known	missense	c.848	p.T283N	0.848	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SLAMF6	HGNC	ENSG00000162739	342	0	0	644	142	18.07	-	-	-	T	160458909	G	T	160458909	3	4	569	1	0	0	0	0	1	0	0	0	14457	1029	36	4	162	4	SLAMF6	1	160458909	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	334011	160458909	88791712	104	50060										
ITLN2	0	genome.wustl.edu	37	chr1	160920969	160920969	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaccgtgcacttcccacgcAtgtcattctcgtgcacgctg	8	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	160920969	160920969	A	G	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	missense	c.305	p.M102T	0.864	superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	222	0	0	364	73	16.63	-	-	-	G	160920969	A	G	160920969	3	3	569	1	0	0	0	0	1	0	0	0	7965	217	8	5	692	5	ITLN2	1	160920969	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	462060	160920969	88329652	105	50061										
NDUFS2	0	genome.wustl.edu	37	chr1	161182212	161182212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgtctaaacaagatgcctcCtggggagatcaaggttgatg	13	7	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161182212	161182212	C	A	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.1058	p.P353H	0.859	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	248	0	0	473	96	16.87	-	-	-	A	161182212	C	A	161182212	3	1	569	1	0	0	0	0	1	0	0	0	10364	681	24	4	1096	4	NDUFS2	1	161182212	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	261243	161182212	88068409	106	50062										
NDUFS2	0	genome.wustl.edu	37	chr1	161183875	161183875	+	RNA	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggatcttgggtaacaccacTttttttgtttgttttgcctc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161183875	161183875	T	-	DEL	NDUFS2	ENST00000465923	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	NDUFS2	HGNC	ENSG00000158864	264	0	0	460	76	14.05	-	-	-	-	161183875	T	-	161183875	6	5	569	0	1	1	0	1	0	0	0	0	10364	1624	56	0		0	NDUFS2	1	161183875	RNA	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	1663	161183875	88066746	107	50063										
TOMM40L	0	genome.wustl.edu	37	chr1	161198542	161198542	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttgaggcaaacacaaggcTacaagacacaacattctcct	7	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161198542	161198542	T	C	SNP	TOMM40L	ENST00000367987	human	ensembl	69_37n	1	known	missense	c.722	p.L241P	1.000	pfam_Porin_Euk	pfam_Porin_Euk	-	no_errors	TOMM40L	HGNC	ENSG00000158882	213	0	0	440	84	16.03	-	-	-	C	161198542	T	C	161198542	3	2	569	1	0	0	0	0	1	0	0	0	16454	1522	53	5	752	5	TOMM40L	1	161198542	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	14667	161198542	88052079	108	50064										
TOMM40L	0	genome.wustl.edu	37	chr1	161199736	161199736	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctttggaggaagtagtgggGttgccaggaaaacaggaggg	18	5	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161199736	161199736	G	A	SNP	TOMM40L	ENST00000474486	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	TOMM40L	HGNC	ENSG00000158882	164	0	0	278	68	19.65	-	-	-	A	161199736	G	A	161199736	1	1	569	0	1	0	0	0	0	0	0	0	16454	1276	44	4		4	TOMM40L	1	161199736	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1194	161199736	88050885	109	50065										
HSPA6	0	genome.wustl.edu	37	chr1	161496286	161496286	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccatcttctccaggctctAtggggggcctggtgtccctg	12	15	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161496286	161496286	A	G	SNP	HSPA6	ENST00000309758	human	ensembl	69_37n	1	known	missense	c.1838	p.Y613C	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110	47	0	0	82	13	13.54	-	-	-	G	161496286	A	G	161496286	3	3	569	1	0	0	0	0	1	0	0	0	7468	449	16	5	1840	5	HSPA6	1	161496286	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	296550	161496286	87754335	110	50066										
OLFML2B	0	genome.wustl.edu	37	chr1	161967735	161967735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgactgtggtgggaggcaCtgggactgtgtgcatagctt	16	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	161967735	161967735	C	T	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.1354	p.V452M	0.000	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	197	1	0.51	368	65	15.01	-	-	-	T	161967735	C	T	161967735	3	4	569	1	0	0	0	0	1	0	0	0	10931	565	20	4	910	4	OLFML2B	1	161967735	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	471449	161967735	87282886	111	50067										
C1orf111	0	genome.wustl.edu	37	chr1	162346433	162346434	+	RNA	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtactcaattaaaagcttcINSaaaaaaaaccacatctttgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	162346433	162346434	-	A	INS	C1orf111	ENST00000493255	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	C1orf111	HGNC	ENSG00000171722	128	0	0	248	48	16.22	-	-	-	A	162346434	-	A	162346433	6	5	569	0	1	1	1	0	0	0	0	0	2003	841	29	0		0	C1orf111	1	162346433	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	378698	162346433	86904188	112	50068										
TADA1	0	genome.wustl.edu	37	chr1	166838699	166838699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tacctggtgtagaaaccaaaAtctgacaacgcgtgagaatg	10	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	166838699	166838699	A	C	SNP	TADA1	ENST00000367874	human	ensembl	69_37n	-1	known	missense	c.215	p.I72S	1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382	245	0	0	471	100	17.51	-	-	-	C	166838699	A	C	166838699	3	2	569	1	0	0	0	0	1	0	0	0	15601	101	4	5	816	5	TADA1	1	166838699	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	4492266	166838699	82411922	113	50069										
DCAF6	0	genome.wustl.edu	37	chr1	167960473	167960473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taactgtcgacgtgctgccaCgtctgttgctatttgcccac	9	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	167960473	167960473	C	T	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.584	p.T195M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	349	0	0	681	177	20.63	-	-	-	T	167960473	C	T	167960473	3	4	569	1	0	0	0	0	1	0	0	0	4306	536	19	1	606	1	DCAF6	1	167960473	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1121774	167960473	81290148	114	50070										
GPR161	0	genome.wustl.edu	37	chr1	168066024	168066024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatgaaggcaccgaggaccAccaggatggtgatgagggct	15	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	168066024	168066024	A	G	SNP	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	missense	c.881	p.V294A	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	75	0	0	117	17	12.59	-	-	-	G	168066024	A	G	168066024	3	3	569	1	0	0	0	0	1	0	0	0	6715	159	6	5	784	5	GPR161	1	168066024	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	105551	168066024	81184597	115	50071										
XCL1	0	genome.wustl.edu	37	chr1	168550325	168550325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcctaaaagtctgtgctgAtccacaagccacatgggtga	11	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	168550325	168550325	A	G	SNP	XCL1	ENST00000367818	human	ensembl	69_37n	1	known	missense	c.212	p.D71G	0.943	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_lymphotactin_XCL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_lymphotactin_XCL1	-	no_errors	XCL1	HGNC	ENSG00000143184	753	0	0	1482	294	16.53	-	-	-	G	168550325	A	G	168550325	3	3	569	1	0	0	0	0	1	0	0	0	17520	333	12	5	222	5	XCL1	1	168550325	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	484301	168550325	80700296	116	50072										
SCYL3	0	genome.wustl.edu	37	chr1	169845143	169845146	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgtggcctgagaaactttAcaaacagtttccattcctcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	169845143	169845146	ACAA	-	DEL	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	frame_shift_del	c.441_438	p.C147fs	0.000:0.972:0.970:0.500	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	311	0	0	683	103	13.02	-	-	-	-	169845146	ACAA	-	169845143	7	5	569	1	0	1	0	1	0	0	0	0	14037	389	14	0	1831	0	SCYL3	1	169845143	Frame_Shift_Del	DEL	ACAA	TCGA-BH-A18G-01A-11D-A12B-09	1294818	169845143	79405478	117	50073										
PRRX1	0	genome.wustl.edu	37	chr1	170705372	170705372	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taagaagaaatcaaaaaccaTaagacacctatcctgctctg	5	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	170705372	170705372	T	C	SNP	PRRX1	ENST00000485529	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.989	-	-	-	no_errors	PRRX1	HGNC	ENSG00000116132	87	0	0	152	46	23.12	-	-	-	C	170705372	T	C	170705372	1	2	569	0	1	0	0	0	0	0	0	0	12692	1421	49	5		5	PRRX1	1	170705372	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	860229	170705372	78545249	118	50074										
C1orf129	0	genome.wustl.edu	37	chr1	170940891	170940891	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctttgtttctccattagatAagtgttgatgctccatgttt	7	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	170940891	170940891	A	G	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	missense	c.483	p.I161M	0.678	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	318	2	0.62	718	153	17.55	-	-	-	G	170940891	A	G	170940891	3	3	569	1	0	0	0	0	1	0	0	0	2015	352	13	5	509	5	C1orf129	1	170940891	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	235519	170940891	78309730	119	50075										
FMO2	0	genome.wustl.edu	37	chr1	171173075	171173075	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatggctatccttgggactcAgtgttccacacccggtttcg	11	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	171173075	171173075	A	G	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	silent	c.699	p.S233	0.002	pfam_Flavin_mOase-like	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	246	0	0	543	81	12.98	-	-	-	G	171173075	A	G	171173075	2	3	569	1	0	0	0	0	0	0	0	1	6001	175	7	5		5	FMO2	1	171173075	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	232184	171173075	78077546	120	50076										
FMO4	0	genome.wustl.edu	37	chr1	171292176	171292176	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgggatgaccagggtctatAagtcattagtgacaaatgtc	11	6	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	171292176	171292176	A	G	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.166	p.K56E	0.382	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	255	0	0	486	82	14.41	-	-	-	G	171292176	A	G	171292176	3	3	569	1	0	0	0	0	1	0	0	0	6003	363	13	5	172	5	FMO4	1	171292176	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	119101	171292176	77958445	121	50077										
DARS2	0	genome.wustl.edu	37	chr1	173808666	173808666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tatggaactgataaacctgaCactcgctttggaatgaaggt	10	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	173808666	173808666	C	T	SNP	DARS2	ENST00000361951	human	ensembl	69_37n	1	known	silent	c.1002	p.D334	0.998	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asp-tRNA-synth_IIb_bac/mt	pfam_aa-tRNA-synt_II,pfam_GAD_dom,pfam_NA-bd_OB_tRNA-helicase,superfamily_GAD_dom,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-synth_IIb_bac/mt	-	no_errors	DARS2	HGNC	ENSG00000117593	294	0	0	589	110	15.74	-	-	-	T	173808666	C	T	173808666	2	4	569	1	0	0	0	0	0	0	0	1	4274	477	17	4		4	DARS2	1	173808666	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2516490	173808666	75441955	122	50078										
PAPPA2	0	genome.wustl.edu	37	chr1	176659424	176659424	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccctgcaaggagacagtgccAtccatggaaacgggagacct	12	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	176659424	176659424	A	G	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	silent	c.2289	p.P763	0.907	pfam_Peptidase_M43	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	101	0	0	177	35	16.51	-	-	-	G	176659424	A	G	176659424	2	3	569	1	0	0	0	0	0	0	0	1	11506	204	8	5		5	PAPPA2	1	176659424	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2850758	176659424	72591197	123	50079										
FAM5B	0	genome.wustl.edu	37	chr1	177199241	177199241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtatgctgacttcatggagCggtaccgccagggtttcacc	12	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	177199241	177199241	C	T	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	missense	c.229	p.R77W	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	22	0	0	62	12	16	-	-	-	T	177199241	C	T	177199241	3	4	569	1	0	0	0	0	1	0	0	0	5638	759	27	1	231	1	FAM5B	1	177199241	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	539817	177199241	72051380	124	50080										
RASAL2	0	genome.wustl.edu	37	chr1	178252826	178252826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgctcaacaaggagaaggaGgtgagatggatattattcag	13	4	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	178252826	178252826	G	T	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.330	p.E110D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	257	0	0	520	105	16.77	-	-	-	T	178252826	G	T	178252826	3	4	569	1	0	0	0	0	1	0	0	0	13147	1014	35	4	336	4	RASAL2	1	178252826	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1053585	178252826	70997795	125	50081										
TOR1AIP2	0	genome.wustl.edu	37	chr1	179815881	179815881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccaaagctggatttttgggCacttgctgggctggagagga	15	7	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	179815881	179815881	C	T	SNP	TOR1AIP2	ENST00000367612	human	ensembl	69_37n	-1	known	silent	c.738	p.V246	0.415	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905	51	0	0	91	13	12.5	-	-	-	T	179815881	C	T	179815881	2	4	569	1	0	0	0	0	0	0	0	1	16469	697	25	4		4	TOR1AIP2	1	179815881	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1563055	179815881	69434740	126	50082										
QSOX1	0	genome.wustl.edu	37	chr1	180153145	180153145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccacagttgcaccaaccactGctaacaagatagctcccact	5	16	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	180153145	180153145	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	missense	c.847	p.A283T	0.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	231	1	0.43	482	90	15.68	-	-	-	A	180153145	G	A	180153145	3	1	569	1	0	0	0	0	1	0	0	0	12966	1319	46	4	873	4	QSOX1	1	180153145	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	337264	180153145	69097476	127	50083										
MR1	0	genome.wustl.edu	37	chr1	181018296	181018296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaccctatcaccacatatgAcagtgtcactcggcagaagg	9	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	181018296	181018296	A	G	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	missense	c.176	p.D59G	0.957	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	148	0	0	335	50	12.95	-	-	-	G	181018296	A	G	181018296	3	3	569	1	0	0	0	0	1	0	0	0	9824	275	10	5	182	5	MR1	1	181018296	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	865151	181018296	68232325	128	50084										
CACNA1E	0	genome.wustl.edu	37	chr1	181705572	181705572	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttcagcaccaccaacccgTaagccaccctcgcgttgctc	6	19	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	181705572	181705572	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	splice_site	c.3422+2	e22+2	1.000	-	-	-	no_errors	CACNA1E	HGNC	ENSG00000198216	304	1	0.33	571	138	19.46	-	-	-	C	181705572	T	C	181705572	5	2	569	1	0	0	0	0	0	0	1	0	2567	1652	57	5	3510	5	CACNA1E	1	181705572	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	687276	181705572	67545049	129	50085										
GLUL	0	genome.wustl.edu	37	chr1	182354826	182354826	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtgagtggtgtatcagcagCccttactagcaaaagtccta	10	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	182354826	182354826	C	T	SNP	GLUL	ENST00000491322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GLUL	HGNC	ENSG00000135821	136	0	0	263	47	15.06	-	-	-	T	182354826	C	T	182354826	1	4	569	0	1	0	0	0	0	0	0	0	6530	754	26	4		4	GLUL	1	182354826	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	649254	182354826	66895795	130	50086										
NPL	0	genome.wustl.edu	37	chr1	182791267	182791268	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtacctataactacctgggINSaaaaaagacaaaccagatgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	182791267	182791268	-	A	INS	NPL	ENST00000258317	human	ensembl	69_37n	1	known	frame_shift_ins	c.671_672	p.T227fs	1.000:0.993	pfam_Dihydrodipicolinate_synth-like	pfam_Dihydrodipicolinate_synth-like,prints_Dihydrodipicolinate_synth-like	-	no_errors	NPL	HGNC	ENSG00000135838	403	0	0	897	146	14	-	-	-	A	182791268	-	A	182791267	7	5	569	1	0	1	1	0	0	0	0	0	10658	1174	41	0	705	0	NPL	1	182791267	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	436441	182791267	66459354	131	50087										
DHX9	0	genome.wustl.edu	37	chr1	182841496	182841496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttccttttggtagtactgCgtgatgttgttcaggcttat	10	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	182841496	182841496	C	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.1582	p.R528C	0.989	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	469	0	0	855	206	19.42	-	-	-	T	182841496	C	T	182841496	3	4	569	1	0	0	0	0	1	0	0	0	4552	768	27	1	1636	1	DHX9	1	182841496	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	50229	182841496	66409125	132	50088										
HMCN1	0	genome.wustl.edu	37	chr1	186083127	186083127	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcagttcctccaaacataaaGgggggcccccagagccttgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	186083127	186083127	G	-	DEL	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	frame_shift_del	c.11148	p.G3718fs	0.562	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	96	0	0	236	48	16.49	-	-	-	-	186083127	G	-	186083127	7	5	569	1	0	1	0	1	0	0	0	0	7271	991	35	0	11438	0	HMCN1	1	186083127	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	3241631	186083127	63167494	133	50089										
HMCN1	0	genome.wustl.edu	37	chr1	186114602	186114602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgtgtaacggagggcagatGcggcggtaccgcacatgtga	16	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	186114602	186114602	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.14334	p.M4778I	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	172	0	0	298	68	18.58	-	-	-	A	186114602	G	A	186114602	3	1	569	1	0	0	0	0	1	0	0	0	7271	1319	46	4	14700	4	HMCN1	1	186114602	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	31475	186114602	63136019	134	50090										
CFHR5	0	genome.wustl.edu	37	chr1	196971637	196971637	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agggaacaattctgcccaccGccacctcagatacctaatgc	7	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	196971637	196971637	G	A	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	silent	c.1245	p.P415	0.971	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	155	0	0	314	81	20.45	-	-	-	A	196971637	G	A	196971637	2	1	569	1	0	0	0	0	0	0	0	1	3317	1074	38	1		1	CFHR5	1	196971637	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	10857035	196971637	52278984	135	50091										
ASPM	0	genome.wustl.edu	37	chr1	197060006	197060006	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttaatgattccactagtgaAtttttcctgctttttacgga	6	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	197060006	197060006	A	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.9610	p.F3204I	0.000	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	192	0	0	393	80	16.91	-	-	-	T	197060006	A	T	197060006	3	4	569	1	0	0	0	0	1	0	0	0	1060	101	4	5	847	5	ASPM	1	197060006	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	88369	197060006	52190615	136	50092										
ZBTB41	0	genome.wustl.edu	37	chr1	197168890	197168890	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccagcatttttaacccatgTtttttccctaataaaaggga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	197168890	197168890	T	-	DEL	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	frame_shift_del	c.714	p.K238fs	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	69	0	0	114	28	19.58	-	-	-	-	197168890	T	-	197168890	7	5	569	1	0	1	0	1	0	0	0	0	17639	1722	60	0	2055	0	ZBTB41	1	197168890	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	108884	197168890	52081731	137	50093										
NR5A2	0	genome.wustl.edu	37	chr1	200014658	200014658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgacaaaacacagagaaagCgttgtccttactgtcgtttt	8	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	200014658	200014658	C	T	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.409	p.R137C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	280	0	0	508	73	12.56	-	-	-	T	200014658	C	T	200014658	3	4	569	1	0	0	0	0	1	0	0	0	10709	768	27	1	423	1	NR5A2	1	200014658	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2845768	200014658	49235963	138	50094										
NR5A2	0	genome.wustl.edu	37	chr1	200143178	200143178	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggactacacaatgtgtaactAcccgcagcagacagagaaat	9	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	200143178	200143178	A	G	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.1466	p.Y489C	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	75	0	0	168	34	16.75	-	-	-	G	200143178	A	G	200143178	3	3	569	1	0	0	0	0	1	0	0	0	10709	391	14	5	1496	5	NR5A2	1	200143178	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	128520	200143178	49107443	139	50095										
DDX59	0	genome.wustl.edu	37	chr1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttcatttaggaagaacaaTtttttttaaggcctagtttg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	69_37n	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197	321	0	0	625	124	16.47	-	-	-	-	200594042	T	-	200594042	7	5	569	1	0	1	0	1	0	0	0	0	4407	1508	52	0		0	DDX59	1	200594042	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	450864	200594042	48656579	140	50096										
CACNA1S	0	genome.wustl.edu	37	chr1	201012645	201012645	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagttgtccacctggccaaaCaggcctccagtcctctaggg	10	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	201012645	201012645	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.4812	p.L1604	0.989	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	177	0	0	284	86	23.24	-	-	-	T	201012645	C	T	201012645	2	4	569	1	0	0	0	0	0	0	0	1	2572	465	17	4		4	CACNA1S	1	201012645	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	418603	201012645	48237976	141	50097										
IGFN1	0	genome.wustl.edu	37	chr1	201181672	201181672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctagggtctggatatgaaCgggacatctggaaagcaggc	14	8	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	201181672	201181672	C	T	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.7651	p.R2551W	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	112	0	0	220	46	17.23	-	-	-	T	201181672	C	T	201181672	3	4	569	1	0	0	0	0	1	0	0	0	7644	527	19	1	7693	1	IGFN1	1	201181672	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	169027	201181672	48068949	142	50098										
CYB5R1	0	genome.wustl.edu	37	chr1	202935903	202935903	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctagcagtcgtagcaggtActtttcattggggtccagga	13	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	202935903	202935903	A	T	SNP	CYB5R1	ENST00000367249	human	ensembl	69_37n	-1	known	missense	c.139	p.Y47N	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	-	no_errors	CYB5R1	HGNC	ENSG00000159348	58	0	0	107	23	17.69	-	-	-	T	202935903	A	T	202935903	3	4	569	1	0	0	0	0	1	0	0	0	4157	391	14	5	810	5	CYB5R1	1	202935903	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1754231	202935903	46314718	143	50099										
CHIT1	0	genome.wustl.edu	37	chr1	203188901	203188901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaggccagtgtgaaggagCgtccgtaggtaggcatgcca	17	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	203188901	203188901	C	T	SNP	CHIT1	ENST00000367229	human	ensembl	69_37n	-1	known	missense	c.806	p.R269H	0.107	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063	93	0	0	151	32	17.49	-	-	-	T	203188901	C	T	203188901	3	4	569	1	0	0	0	0	1	0	0	0	3375	768	27	1	610	1	CHIT1	1	203188901	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	252998	203188901	46061720	144	50100										
SOX13	0	genome.wustl.edu	37	chr1	204091056	204091056	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgctgcagctgctgcacagCccccctgccccagtggtgaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	204091056	204091056	C	-	DEL	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	frame_shift_del	c.804	p.P270fs	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	157	0	0	274	50	15.06	-	-	-	-	204091056	C	-	204091056	7	5	569	1	0	1	0	1	0	0	0	0	15033	738	26	0	830	0	SOX13	1	204091056	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	902155	204091056	45159565	145	50101										
PLEKHA6	0	genome.wustl.edu	37	chr1	204210854	204210854	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctgcctctacctcttgcCtggtgggcacaaggctgatg	11	13	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	204210854	204210854	C	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.2261	p.R754M	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	552	0	0	996	230	18.76	-	-	-	A	204210854	C	A	204210854	3	1	569	1	0	0	0	0	1	0	0	0	12134	681	24	4	913	4	PLEKHA6	1	204210854	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	119798	204210854	45039767	146	50102										
NFASC	0	genome.wustl.edu	37	chr1	204957854	204957854	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacggaccccgtgtcacgctAccgctttaccctcagcgcca	8	18	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	204957854	204957854	A	G	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.3008	p.Y1003C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	90	0	0	144	36	19.46	-	-	-	G	204957854	A	G	204957854	3	3	569	1	0	0	0	0	1	0	0	0	10431	391	14	5	3182	5	NFASC	1	204957854	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	747000	204957854	44292767	147	50103										
NFASC	0	genome.wustl.edu	37	chr1	204966377	204966377	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctactgccattgctgccacCaccgaagccacaacagtccc	7	18	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	204966377	204966377	C	A	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	silent	c.3183	p.T1061	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	614	0	0	953	207	17.84	-	-	-	A	204966377	C	A	204966377	2	1	569	1	0	0	0	0	0	0	0	1	10431	581	21	4		4	NFASC	1	204966377	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8523	204966377	44284244	148	50104										
CNTN2	0	genome.wustl.edu	37	chr1	205028245	205028245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggctcctcaacgagttccCcaacttcatcccgacggacg	8	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	205028245	205028245	C	T	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.521	p.P174L	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	126	0	0	170	38	18.27	-	-	-	T	205028245	C	T	205028245	3	4	569	1	0	0	0	0	1	0	0	0	3671	623	22	4	539	4	CNTN2	1	205028245	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	61868	205028245	44222376	149	50105										
CNTN2	0	genome.wustl.edu	37	chr1	205033454	205033454	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccctttccttctagcactCgcccctgacttcaggctgaa	6	17	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	205033454	205033454	C	T	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	silent	c.1245	p.L415	0.675	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	162	1	0.61	285	67	19.03	-	-	-	T	205033454	C	T	205033454	2	4	569	1	0	0	0	0	0	0	0	1	3671	871	31	1		1	CNTN2	1	205033454	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5209	205033454	44217167	150	50106										
LEMD1	0	genome.wustl.edu	37	chr1	205389680	205389680	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accatgatgatagaagtttgGcctcttttctgatggtagaa	10	6	2	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	205389680	205389680	G	A	SNP	LEMD1	ENST00000476884	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	LEMD1	HGNC	ENSG00000186007	270	0	0	484	93	16.09	-	-	-	A	205389680	G	A	205389680	1	1	569	0	1	0	0	0	0	0	0	0	8773	1218	42	4		4	LEMD1	1	205389680	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	356226	205389680	43860941	151	50107										
PM20D1	0	genome.wustl.edu	37	chr1	205797688	205797688	+	RNA	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttcatcaacactagctttCccccttgggttagtcctgtc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	205797688	205797688	C	-	DEL	PM20D1	ENST00000460624	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PM20D1	HGNC	ENSG00000162877	221	1	0.45	398	78	16.15	-	-	-	-	205797688	C	-	205797688	6	5	569	0	1	1	0	1	0	0	0	0	12202	870	30	0		0	PM20D1	1	205797688	RNA	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	408008	205797688	43452933	152	50108										
CTSE	0	genome.wustl.edu	37	chr1	206317585	206317585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcggactcacaatgaaaacGctccttcttttgctgctggt	9	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	206317585	206317585	G	A	SNP	CTSE	ENST00000361052	human	ensembl	69_37n	1	known	silent	c.9	p.T3	0.000	superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSE	HGNC	ENSG00000196188	259	0	0	480	82	14.51	-	-	-	A	206317585	G	A	206317585	2	1	569	1	0	0	0	0	0	0	0	1	4065	1074	38	1		1	CTSE	1	206317585	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	519897	206317585	42933036	153	50109										
IKBKE	0	genome.wustl.edu	37	chr1	206647810	206647810	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caagctctttgcggtggaggAgacggtaggtccggtgcttg	17	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	206647810	206647810	A	G	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.224	p.E75G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	96	0	0	203	41	16.73	-	-	-	G	206647810	A	G	206647810	3	3	569	1	0	0	0	0	1	0	0	0	7666	304	11	5	230	5	IKBKE	1	206647810	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	330225	206647810	42602811	154	50110										
IKBKE	0	genome.wustl.edu	37	chr1	206649650	206649650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacagacttcggcgctgcccGggagctggatgatgatgaga	16	9	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	206649650	206649650	G	A	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.485	p.R162Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	195	0	0	354	113	24.04	-	-	-	A	206649650	G	A	206649650	3	1	569	1	0	0	0	0	1	0	0	0	7666	1116	39	1	499	1	IKBKE	1	206649650	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1840	206649650	42600971	155	50111										
CAMK1G	0	genome.wustl.edu	37	chr1	209785393	209785393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtggcaggtccctcaactGcctggtcaatggctccctcc	11	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	209785393	209785393	G	A	SNP	CAMK1G	ENST00000009105	human	ensembl	69_37n	1	known	missense	c.1172	p.C391Y	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	51	0	0	107	23	17.42	-	-	-	A	209785393	G	A	209785393	3	1	569	1	0	0	0	0	1	0	0	0	2623	1319	46	4	1210	4	CAMK1G	1	209785393	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3135743	209785393	39465228	156	50112										
TRAF5	0	genome.wustl.edu	37	chr1	211533923	211533923	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttaatccttttttggaattAggcaataacttcctgtagag	7	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	211533923	211533923	A	G	SNP	TRAF5	ENST00000462410	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRAF5	HGNC	ENSG00000082512	86	0	0	155	34	17.89	-	-	-	G	211533923	A	G	211533923	1	3	569	0	1	0	0	0	0	0	0	0	16540	435	15	5		5	TRAF5	1	211533923	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1748530	211533923	37716698	157	50113										
TMEM206	0	genome.wustl.edu	37	chr1	212548597	212548597	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacaaaaaacaattgagcacTttttttggcagctggcctct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	212548597	212548597	T	-	DEL	TMEM206	ENST00000535273	human	ensembl	69_37n	-1	known	frame_shift_del	c.1012	p.S338fs	0.016	NULL	NULL	-	no_errors	TMEM206	HGNC	ENSG00000065600	211	0	0	346	65	15.7	-	-	-	-	212548597	T	-	212548597	7	5	569	1	0	1	0	1	0	0	0	0	16226	1609	56	0	231	0	TMEM206	1	212548597	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	1014674	212548597	36702024	158	50114										
GPATCH2	0	genome.wustl.edu	37	chr1	217784358	217784358	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagggcacaactccagtgatAccacatgctccacctgattc	7	15	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	217784358	217784358	A	G	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	silent	c.891	p.G297	0.819	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	228	0	0	519	94	15.31	-	-	-	G	217784358	A	G	217784358	2	3	569	1	0	0	0	0	0	0	0	1	6641	378	14	5		5	GPATCH2	1	217784358	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	5235761	217784358	31466263	159	50115										
IARS2	0	genome.wustl.edu	37	chr1	220284183	220284183	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagaggagaaattggtgcaTagctatccgtatgactggag	13	5	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	220284183	220284183	T	C	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	silent	c.1383	p.H461	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	182	0	0	360	70	16.28	-	-	-	C	220284183	T	C	220284183	2	2	569	1	0	0	0	0	0	0	0	1	7528	1403	49	5		5	IARS2	1	220284183	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2499825	220284183	28966438	160	50116										
TAF1A	0	genome.wustl.edu	37	chr1	222743947	222743947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgcagaaatatttgcagatGtcttccagctgtggttgaac	10	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	222743947	222743947	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	69_37n	-1	known	missense	c.665	p.T222I	0.993	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498	147	0	0	356	78	17.97	-	-	-	A	222743947	G	A	222743947	3	1	569	1	0	0	0	0	1	0	0	0	15611	1377	48	4	711	4	TAF1A	1	222743947	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2459764	222743947	26506674	161	50117										
MIA3	0	genome.wustl.edu	37	chr1	222833273	222833273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagaattaacacaaaagatgGcaatgctgcaagaagaacct	8	7	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	222833273	222833273	G	A	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.4900	p.A1634T	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	241	0	0	431	96	18.18	-	-	-	A	222833273	G	A	222833273	3	1	569	1	0	0	0	0	1	0	0	0	9636	1203	42	4	4990	4	MIA3	1	222833273	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	89326	222833273	26417348	162	50118										
DISP1	0	genome.wustl.edu	37	chr1	223177181	223177181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggaagttgacattagatagCagttttaacatcgccagccc	10	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	223177181	223177181	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	silent	c.2442	p.S814	0.911	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	127	0	0	233	38	14.02	-	-	-	T	223177181	C	T	223177181	2	4	569	1	0	0	0	0	0	0	0	1	4575	709	25	4		4	DISP1	1	223177181	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	343908	223177181	26073440	163	50119										
DEGS1	0	genome.wustl.edu	37	chr1	224380050	224380050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctaggtgaggaaaatagcagCtgaatactatgacaacctcc	9	9	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	224380050	224380050	C	T	SNP	DEGS1	ENST00000323699	human	ensembl	69_37n	1	known	missense	c.842	p.A281V	0.878	pfam_Fatty_acid_desaturase-1,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS1	HGNC	ENSG00000143753	167	1	0.6	338	85	20.09	-	-	-	T	224380050	C	T	224380050	3	4	569	1	0	0	0	0	1	0	0	0	4458	797	28	4	852	4	DEGS1	1	224380050	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1202869	224380050	24870571	164	50120										
NVL	0	genome.wustl.edu	37	chr1	224517828	224517828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accctgcaggtctgggcttcAtcgcgtcggtcttccaagcc	11	15	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	224517828	224517828	A	G	SNP	NVL	ENST00000281701	human	ensembl	69_37n	-1	known	missense	c.2	p.M1T	0.997	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,smart_AAA+_ATPase	-	no_errors	NVL	HGNC	ENSG00000143748	91	0	0	183	30	13.95	-	-	-	G	224517828	A	G	224517828	3	3	569	1	0	0	0	0	1	0	0	0	10853	217	8	5	2660	5	NVL	1	224517828	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	137778	224517828	24732793	165	50121										
PARP1	0	genome.wustl.edu	37	chr1	226573298	226573298	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagtgcagtaataggcatcGctcttgaagaccagctgacc	10	12	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	226573298	226573298	G	A	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	silent	c.918	p.S306	0.187	pfam_PADR1,pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	159	0	0	286	61	17.53	-	-	-	A	226573298	G	A	226573298	2	1	569	1	0	0	0	0	0	0	0	1	11527	1078	38	1		1	PARP1	1	226573298	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2055470	226573298	22677323	166	50122										
CDC42BPA	0	genome.wustl.edu	37	chr1	227216436	227216436	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagtcagtgtatatcccaaTgctgttaaaacacagcagat	8	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	227216436	227216436	T	C	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.4249	p.I1417V	1.000	pfam_Citron,superfamily_WD40_repeat_dom,smart_Citron	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	223	1	0.45	415	70	14.37	-	-	-	C	227216436	T	C	227216436	3	2	569	1	0	0	0	0	1	0	0	0	3101	1464	51	5	942	5	CDC42BPA	1	227216436	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	643138	227216436	22034185	167	50123										
CDC42BPA	0	genome.wustl.edu	37	chr1	227219043	227219043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttaatgaggggtagagtgCtgtcataagcctctttggga	13	5	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	227219043	227219043	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.3626	p.S1209N	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	372	0	0	708	129	15.38	-	-	-	T	227219043	C	T	227219043	3	4	569	1	0	0	0	0	1	0	0	0	3101	797	28	4	1573	4	CDC42BPA	1	227219043	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2607	227219043	22031578	168	50124										
MRPL55	0	genome.wustl.edu	37	chr1	228295542	228295542	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggcggagtgcaggtccggTggccttcacggtgctctgcc	17	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	228295542	228295542	T	C	SNP	MRPL55	ENST00000366731	human	ensembl	69_37n	-1	known	missense	c.163	p.T55A	0.002	pfam_Ribosomal_L55_mit	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910	32	0	0	72	9	10.84	-	-	-	C	228295542	T	C	228295542	3	2	569	1	0	0	0	0	1	0	0	0	9891	1696	59	5	339	5	MRPL55	1	228295542	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1076499	228295542	20955079	169	50125										
OBSCN	0	genome.wustl.edu	37	chr1	228475592	228475592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtggtccggaacctccggCcgcaggacagcgggcggtac	17	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	228475592	228475592	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.9742	p.P3248S	0.057	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	114	1	0.87	189	38	16.74	-	-	-	T	228475592	C	T	228475592	3	4	569	1	0	0	0	0	1	0	0	0	10885	739	26	4	9880	4	OBSCN	1	228475592	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	180050	228475592	20775029	170	50126										
TRIM17	0	genome.wustl.edu	37	chr1	228598716	228598716	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcagcagctccagagagtgAccctgccggtccaggcaggc	14	14	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	228598716	228598716	A	T	SNP	TRIM17	ENST00000295033	human	ensembl	69_37n	-1	known	silent	c.687	p.G229	0.470	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	27	0	0	65	15	18.07	-	-	-	T	228598716	A	T	228598716	2	4	569	1	0	0	0	0	0	0	0	1	16589	262	10	5		5	TRIM17	1	228598716	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	123124	228598716	20651905	171	50127										
TAF5L	0	genome.wustl.edu	37	chr1	229738112	229738112	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcagtgttcaacagctgctCtgtgttatagaaggcataga	11	7	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	229738112	229738112	C	A	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	nonsense	c.802	p.E268*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	170	0	0	322	72	18.23	-	-	-	A	229738112	C	A	229738112	4	1	569	1	0	0	0	0	0	1	0	0	15621	922	32	2	981	2	TAF5L	1	229738112	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1139396	229738112	19512509	172	50128										
TAF5L	0	genome.wustl.edu	37	chr1	229750174	229750174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgagtccacgtactgccggCgtttgaggtagcaggacact	13	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	229750174	229750174	C	T	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	missense	c.56	p.R19H	1.000	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	218	0	0	408	82	16.73	-	-	-	T	229750174	C	T	229750174	3	4	569	1	0	0	0	0	1	0	0	0	15621	768	27	1	1735	1	TAF5L	1	229750174	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	12062	229750174	19500447	173	50129										
COG2	0	genome.wustl.edu	37	chr1	230819335	230819335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcagatttagagaaatagcGggatccttagaagcagcact	10	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	230819335	230819335	G	A	SNP	COG2	ENST00000366669	human	ensembl	69_37n	1	known	silent	c.1182	p.A394	0.065	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	339	0	0	714	132	15.58	-	-	-	A	230819335	G	A	230819335	2	1	569	1	0	0	0	0	0	0	0	1	3688	1103	39	1		1	COG2	1	230819335	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1069161	230819335	18431286	174	50130										
TRIM67	0	genome.wustl.edu	37	chr1	231339666	231339666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcacccgtaacaacagcGtcacgctggcctggaggatg	13	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	231339666	231339666	G	A	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	missense	c.1588	p.V530I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	119	0	0	245	45	15.52	-	-	-	A	231339666	G	A	231339666	3	1	569	1	0	0	0	0	1	0	0	0	16636	1145	40	1	1610	1	TRIM67	1	231339666	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	520331	231339666	17910955	175	50131										
TRIM67	0	genome.wustl.edu	37	chr1	231344914	231344914	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgtggtcaaggacatgatgCtgggcaaggatgacaaggcc	16	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	231344914	231344914	C	T	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	silent	c.2041	p.L681	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	243	1	0.41	415	96	18.71	-	-	-	T	231344914	C	T	231344914	2	4	569	1	0	0	0	0	0	0	0	1	16636	796	28	4		4	TRIM67	1	231344914	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5248	231344914	17905707	176	50132										
DISC1	0	genome.wustl.edu	37	chr1	231829666	231829666	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctcgacagggcctgggatCgggttcctttccccagcagt	13	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	231829666	231829666	C	T	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	1	known	silent	c.162	p.I54	0.025	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	112	1	0.88	213	47	18.08	-	-	-	T	231829666	C	T	231829666	2	4	569	1	0	0	0	0	0	0	0	1	4574	874	31	1		1	DISC1	1	231829666	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	484752	231829666	17420955	177	50133										
SIPA1L2	0	genome.wustl.edu	37	chr1	232568108	232568108	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtagggcttggacatggaccCgggaacctgttgtccgctgc	15	11	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	232568108	232568108	C	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.4141	p.G1381W	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	321	0	0	706	142	16.73	-	-	-	A	232568108	C	A	232568108	3	1	569	1	0	0	0	0	1	0	0	0	14419	652	23	3	1059	3	SIPA1L2	1	232568108	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	738442	232568108	16682513	178	50134										
SIPA1L2	0	genome.wustl.edu	37	chr1	232601164	232601164	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgatctggaaactccaacacTgaggaagtaaaaacagaaac	8	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	232601164	232601164	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	splice_site	c.2244-2	e7-2	0.999	-	-	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	73	0	0	119	21	15	-	-	-	C	232601164	T	C	232601164	5	2	569	1	0	0	0	0	0	0	1	0	14419	1594	55	5	2986	5	SIPA1L2	1	232601164	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	33056	232601164	16649457	179	50135										
TARBP1	0	genome.wustl.edu	37	chr1	234556530	234556530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtagagaattcacatagtagCgttttttggacttggacact	10	6	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	234556530	234556530	C	T	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.3473	p.R1158H	0.842	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	361	0	0	690	132	16.06	-	-	-	T	234556530	C	T	234556530	3	4	569	1	0	0	0	0	1	0	0	0	15647	768	27	1	1432	1	TARBP1	1	234556530	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1955366	234556530	14694091	180	50136										
TBCE	0	genome.wustl.edu	37	chr1	235600767	235600767	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tatcgccagcattggccagcTgaagacgctgaacaaatgtg	11	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	235600767	235600767	T	C	SNP	TBCE	ENST00000543662	human	ensembl	69_37n	1	known	missense	c.1247	p.L416P	1.000	NULL	pfam_CAP-Gly_domain,pfam_Ribosomal_S21e,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCE	HGNC	ENSG00000116957	209	0	0	356	72	16.82	-	-	-	C	235600767	T	C	235600767	3	2	569	1	0	0	0	0	1	0	0	0	15729	1580	55	5	1136	5	TBCE	1	235600767	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1044237	235600767	13649854	181	50137										
LYST	0	genome.wustl.edu	37	chr1	235856727	235856727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaccttaaaatattatcagCatatccccagctcaggatgg	6	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	235856727	235856727	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.10624	p.A3542T	1.000	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	208	0	0	375	68	15.32	-	-	-	T	235856727	C	T	235856727	3	4	569	1	0	0	0	0	1	0	0	0	9195	710	25	4	809	4	LYST	1	235856727	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	255960	235856727	13393894	182	50138										
LYST	0	genome.wustl.edu	37	chr1	235926116	235926116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctggaatgcctcaggtacaTgattgaccgcactttctcct	9	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	235926116	235926116	T	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.6157	p.M2053V	0.999	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	132	0	0	309	62	16.71	-	-	-	C	235926116	T	C	235926116	3	2	569	1	0	0	0	0	1	0	0	0	9195	1464	51	5	5376	5	LYST	1	235926116	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	69389	235926116	13324505	183	50139										
LYST	0	genome.wustl.edu	37	chr1	235972931	235972931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggtaaaagaagggctctaTgacgatactttgaaaacaca	9	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	235972931	235972931	T	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.1187	p.H396R	0.998	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	146	0	0	313	62	16.53	-	-	-	C	235972931	T	C	235972931	3	2	569	1	0	0	0	0	1	0	0	0	9195	1464	51	5	10414	5	LYST	1	235972931	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	46815	235972931	13277690	184	50140										
NID1	0	genome.wustl.edu	37	chr1	236148736	236148736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actagctctcccaatggaagGctcagtgatgtccgtccagt	10	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	236148736	236148736	G	A	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.2998	p.P1000S	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	330	0	0	659	111	14.36	-	-	-	A	236148736	G	A	236148736	3	1	569	1	0	0	0	0	1	0	0	0	10486	1203	42	4	769	4	NID1	1	236148736	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	175805	236148736	13101885	185	50141										
NID1	0	genome.wustl.edu	37	chr1	236157147	236157147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgagaatgtgttctcgctcGtgctggcaccgggttttctc	12	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	236157147	236157147	G	A	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	silent	c.2553	p.H851	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	34	0	0	54	9	14.29	-	-	-	A	236157147	G	A	236157147	2	1	569	1	0	0	0	0	0	0	0	1	10486	1136	40	1		1	NID1	1	236157147	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8411	236157147	13093474	186	50142										
HEATR1	0	genome.wustl.edu	37	chr1	236738190	236738190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttcagccataggcaatagcTgagaaagcaccatctaaaga	9	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	236738190	236738190	T	C	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.3098	p.Q1033R	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	179	1	0.56	350	62	15.01	-	-	-	C	236738190	T	C	236738190	3	2	569	1	0	0	0	0	1	0	0	0	7078	1580	55	5	3428	5	HEATR1	1	236738190	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	581043	236738190	12512431	187	50143										
HEATR1	0	genome.wustl.edu	37	chr1	236761182	236761182	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaacagactgctcaccttcAcagattttgtcaccaaactg	6	12	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	236761182	236761182	A	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.599	p.V200A	1.000	NULL	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	327	0	0	632	105	14.25	-	-	-	G	236761182	A	G	236761182	3	3	569	1	0	0	0	0	1	0	0	0	7078	159	6	5	5999	5	HEATR1	1	236761182	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	22992	236761182	12489439	188	50144										
CHRM3	0	genome.wustl.edu	37	chr1	240071128	240071128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catttcaatgaatctgtttaCgacctacatcatcatgaatc	4	10	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	240071128	240071128	C	T	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	missense	c.377	p.T126M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	185	0	0	320	64	16.58	-	-	-	T	240071128	C	T	240071128	3	4	569	1	0	0	0	0	1	0	0	0	3407	536	19	1	379	1	CHRM3	1	240071128	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3309946	240071128	9179493	189	50145										
SDCCAG8	0	genome.wustl.edu	37	chr1	243507632	243507632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggatcttgaaattaaagatcAggtaagagaggacacagcat	11	5	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	243507632	243507632	A	G	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.1472	p.Q491R	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	348	2	0.57	640	131	16.99	-	-	-	G	243507632	A	G	243507632	3	3	569	1	0	0	0	0	1	0	0	0	14047	202	7	5	1518	5	SDCCAG8	1	243507632	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3436504	243507632	5742989	190	50146										
HNRNPU	0	genome.wustl.edu	37	chr1	245019248	245019248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgcatattgaatcctccacGtcctctatggccaccacctc	5	17	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	245019248	245019248	G	A	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.2125	p.R709C	0.995	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	436	0	0	825	188	18.52	-	-	-	A	245019248	G	A	245019248	3	1	569	1	0	0	0	0	1	0	0	0	7324	1145	40	1	368	1	HNRNPU	1	245019248	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1511616	245019248	4231373	191	50147										
KIF26B	0	genome.wustl.edu	37	chr1	245530587	245530587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caatgggaacatcctcaattCggtggccatccaggctcacc	9	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	245530587	245530587	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.917	p.S306L	0.999	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	69	0	0	119	33	21.71	-	-	-	T	245530587	C	T	245530587	3	4	569	1	0	0	0	0	1	0	0	0	8347	893	31	1	927	1	KIF26B	1	245530587	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	511339	245530587	3720034	192	50148										
ZNF669	0	genome.wustl.edu	37	chr1	247264139	247264139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaatctgaatgttttcccaCattccttacattcgtagggt	6	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	247264139	247264139	C	T	SNP	ZNF669	ENST00000343381	human	ensembl	69_37n	-1	known	missense	c.932	p.C311Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	245	0	0	445	93	17.29	-	-	-	T	247264139	C	T	247264139	3	4	569	1	0	0	0	0	1	0	0	0	18172	478	17	4	466	4	ZNF669	1	247264139	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1733552	247264139	1986482	193	50149										
ZNF496	0	genome.wustl.edu	37	chr1	247473858	247473858	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acacaacgctgtaggacgggCagtttctatacaacagaaat	9	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	247473858	247473858	C	T	SNP	ZNF496	ENST00000462139	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF496	HGNC	ENSG00000162714	59	0	0	83	21	20.19	-	-	-	T	247473858	C	T	247473858	1	4	569	0	1	0	0	0	0	0	0	0	18041	725	25	4		4	ZNF496	1	247473858	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	209719	247473858	1776763	194	50150										
OR2L13	0	genome.wustl.edu	37	chr1	248263281	248263281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatatatggtttttgtaagtAcaagcctctttctccttttc	5	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	248263281	248263281	A	G	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	missense	c.604	p.T202A	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	639	0	0	1130	241	17.46	-	-	-	G	248263281	A	G	248263281	3	3	569	1	0	0	0	0	1	0	0	0	11079	391	14	5	606	5	OR2L13	1	248263281	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	789423	248263281	987340	195	50151										
OR2T1	0	genome.wustl.edu	37	chr1	248569431	248569431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaagatattaccttatatcGgcacaactgtaggatcaatg	9	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	1	248569431	248569431	G	A	SNP	OR2T1	ENST00000366474	human	ensembl	69_37n	1	known	missense	c.136	p.G46S	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	268	0	0	479	94	16.4	-	-	-	A	248569431	G	A	248569431	3	1	569	1	0	0	0	0	1	0	0	0	11089	1116	39	1	138	1	OR2T1	1	248569431	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	306150	248569431	681190	196	50152										
TPO	0	genome.wustl.edu	37	chr2	1507748	1507748	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagtgtgcagacggtgcccaCcccccctgccacgcctctgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	1507748	1507748	C	-	DEL	TPO	ENST00000329066	human	ensembl	69_37n	1	known	frame_shift_del	c.2415	p.C808fs	0.002	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	89	0	0	77	25	24.04	-	-	-	-	1507748	C	-	1507748	7	5	569	1	0	1	0	1	0	0	0	0	16506	506	18	0	2465	0	TPO	2	1507748	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09		1507748	241691625	197	50153										
TSSC1	0	genome.wustl.edu	37	chr2	3217957	3217957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcctgtaaatcccacagcAggatatggttatcagccaag	8	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	3217957	3217957	A	G	SNP	TSSC1	ENST00000382125	human	ensembl	69_37n	-1	known	missense	c.479	p.L160P	1.000	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389	250	0	0	158	84	34.71	-	-	-	G	3217957	A	G	3217957	3	3	569	1	0	0	0	0	1	0	0	0	16762	188	7	5	704	5	TSSC1	2	3217957	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1710209	3217957	239981416	198	50154										
KIDINS220	0	genome.wustl.edu	37	chr2	8870951	8870951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagccttgtgtaacttgaacGttggcttcgcttatgtgtca	11	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	8870951	8870951	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.5215	p.R1739C	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	479	0	0	293	158	35.03	-	-	-	A	8870951	G	A	8870951	3	1	569	1	0	0	0	0	1	0	0	0	8323	1145	40	1	104	1	KIDINS220	2	8870951	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5652994	8870951	234328422	199	50155										
ASAP2	0	genome.wustl.edu	37	chr2	9525431	9525431	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcacgttgaatatgaatggCgactactccacgaagacctg	9	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	9525431	9525431	C	T	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	nonsense	c.2074	p.R692*	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	317	0	0	209	96	31.48	-	-	-	T	9525431	C	T	9525431	4	4	569	1	0	0	0	0	0	1	0	0	1015	760	27	1	2156	1	ASAP2	2	9525431	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	654480	9525431	233673942	200	50156										
SMC6	0	genome.wustl.edu	37	chr2	17881629	17881629	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttcattttgcttttatttTcctgagcttcatcttcctga	4	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	17881629	17881629	T	C	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.2318	p.E773G	1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	549	0	0	492	94	15.99	-	-	-	C	17881629	T	C	17881629	3	2	569	1	0	0	0	0	1	0	0	0	14876	1783	62	5	1067	5	SMC6	2	17881629	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	8356198	17881629	225317744	201	50157										
PUM2	0	genome.wustl.edu	37	chr2	20463032	20463032	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaggtttgggaagcggttgTttctgaaatcttccaataat	11	5	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	20463032	20463032	T	C	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.2147	p.N716S	1.000	superfamily_ARM-type_fold,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	174	0	0	118	76	39.18	-	-	-	C	20463032	T	C	20463032	3	2	569	1	0	0	0	0	1	0	0	0	12909	1725	60	5	1079	5	PUM2	2	20463032	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2581403	20463032	222736341	202	50158										
UBXN2A	0	genome.wustl.edu	37	chr2	24199863	24199863	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtaaatataaaattatggAaaaacggattcaccgtcaac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	24199863	24199863	A	-	DEL	UBXN2A	ENST00000309033	human	ensembl	69_37n	1	known	frame_shift_del	c.205	p.N70fs	1.000	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2A	HGNC	ENSG00000173960	237	0	0	142	73	33.18	-	-	-	-	24199863	A	-	24199863	7	5	569	1	0	1	0	1	0	0	0	0	17011	247	9	0	215	0	UBXN2A	2	24199863	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	3736831	24199863	218999510	203	50159										
ASXL2	0	genome.wustl.edu	37	chr2	25967093	25967093	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctagcagtctgcccttcacCaccctctcctggaccttgtc	6	18	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	25967093	25967093	C	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.2113	p.G705C	0.093	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	124	0	0	86	62	41.89	-	-	-	A	25967093	C	A	25967093	3	1	569	1	0	0	0	0	1	0	0	0	1071	594	21	4	2198	4	ASXL2	2	25967093	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1767230	25967093	217232280	204	50160										
GPR113	0	genome.wustl.edu	37	chr2	26536705	26536705	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtcacaagcgtacgtggtgTcagccatcgggcagcgctga	15	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	26536705	26536705	T	C	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	missense	c.602	p.D201G	0.469	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	159	1	0.62	90	58	38.93	-	-	-	C	26536705	T	C	26536705	3	2	569	1	0	0	0	0	1	0	0	0	6680	1667	58	5	2153	5	GPR113	2	26536705	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	569612	26536705	216662668	205	50161										
EMILIN1	0	genome.wustl.edu	37	chr2	27303605	27303605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctgcctctgccaggtaccGccgcttcctccgccctcgct	8	20	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	27303605	27303605	G	A	SNP	EMILIN1	ENST00000380320	human	ensembl	69_37n	1	known	missense	c.296	p.R99H	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080	50	0	0	31	12	27.27	-	-	-	A	27303605	G	A	27303605	3	1	569	1	0	0	0	0	1	0	0	0	5130	1087	38	1	306	1	EMILIN1	2	27303605	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	766900	27303605	215895768	206	50162										
GTF3C2	0	genome.wustl.edu	37	chr2	27552349	27552349	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcagagagccgtatccgctGcaggggtgagttagtgggaa	16	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	27552349	27552349	G	A	SNP	GTF3C2	ENST00000264720	human	ensembl	69_37n	-1	known	nonsense	c.1774	p.Q592*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207	226	0	0	125	70	35.9	-	-	-	A	27552349	G	A	27552349	4	1	569	1	0	0	0	0	0	1	0	0	6924	1328	46	4	989	4	GTF3C2	2	27552349	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	248744	27552349	215647024	207	50163										
NRBP1	0	genome.wustl.edu	37	chr2	27658018	27658018	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctacctgcactcctgtgaCccccccatcatccatgggaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	27658018	27658018	C	-	DEL	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	frame_shift_del	c.585	p.I198fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	333	0	0	249	128	33.42	-	-	-	-	27658018	C	-	27658018	7	5	569	1	0	1	0	1	0	0	0	0	10715	506	18	0	607	0	NRBP1	2	27658018	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	105669	27658018	215541355	208	50164										
BIRC6	0	genome.wustl.edu	37	chr2	32740628	32740628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagtcaatccactatggacaGcacttctgtttttattgtgt	7	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	32740628	32740628	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.11140	p.A3714T	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	222	0	0	168	69	29.11	-	-	-	A	32740628	G	A	32740628	3	1	569	1	0	0	0	0	1	0	0	0	1443	971	34	4	11358	4	BIRC6	2	32740628	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5082610	32740628	210458745	209	50165										
GALM	0	genome.wustl.edu	37	chr2	38958912	38958912	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagcgggcgggtactagaagTatacaccacccagcccgggg	14	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	38958912	38958912	T	C	SNP	GALM	ENST00000272252	human	ensembl	69_37n	1	known	missense	c.812	p.V271A	0.999	pfam_Aldose_1/G6P_1-epimerase,superfamily_Glyco_hydro-type_carb-bd	pfam_Aldose_1/G6P_1-epimerase,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GALM	HGNC	ENSG00000143891	217	0	0	140	117	45.17	-	-	-	C	38958912	T	C	38958912	3	2	569	1	0	0	0	0	1	0	0	0	6255	1638	57	5	834	5	GALM	2	38958912	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6218284	38958912	204240461	210	50166										
SLC8A1	0	genome.wustl.edu	37	chr2	40405624	40405624	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatcaattaccttgactgaTattgttttgctgaaacagag	7	7	2	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	40405624	40405624	T	C	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1818	p.I606M	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	488	0	0	308	167	35.16	-	-	-	C	40405624	T	C	40405624	3	2	569	1	0	0	0	0	1	0	0	0	14795	1396	49	5	1247	5	SLC8A1	2	40405624	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1446712	40405624	202793749	211	50167										
GPR75	0	genome.wustl.edu	37	chr2	54081275	54081276	+	Frame_Shift_Del	DEL	AG	AG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaggtgaagtcgaccacatAgagagacaaaatggctttcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	54081275	54081276	AG	-	DEL	GPR75	ENST00000394705	human	ensembl	69_37n	-1	known	frame_shift_del	c.619_618	p.Y207fs	1.000:0.894	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR75	HGNC	ENSG00000119737	266	0	0	172	66	27.73	-	-	-	-	54081276	AG	-	54081275	7	5	569	1	0	1	0	1	0	0	0	0	6758	420	15	0	1007	0	GPR75	2	54081275	Frame_Shift_Del	DEL	AG	TCGA-BH-A18G-01A-11D-A12B-09	13675651	54081275	189118098	212	50168										
PSME4	0	genome.wustl.edu	37	chr2	54154539	54154539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaatacccttacttctgtgaGgtcatttctttcttgtagta	6	8	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	54154539	54154539	G	T	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	missense	c.1585	p.L529I	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	294	0	0	209	96	31.48	-	-	-	T	54154539	G	T	54154539	3	4	569	1	0	0	0	0	1	0	0	0	12789	1000	35	4	4086	4	PSME4	2	54154539	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	73264	54154539	189044834	213	50169										
USP34	0	genome.wustl.edu	37	chr2	61431727	61431727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactcaaaagtacaagttccTtgaggacatctgaaaataaa	7	7	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	61431727	61431727	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.9164	p.K3055R	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	296	0	0	242	130	34.95	-	-	-	C	61431727	T	C	61431727	3	2	569	1	0	0	0	0	1	0	0	0	17162	1609	56	5	1508	5	USP34	2	61431727	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7277188	61431727	181767646	214	50170										
AAK1	0	genome.wustl.edu	37	chr2	69704074	69704074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcttcagccaccttgtccGagccctcagggacatcaaaa	7	15	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	69704074	69704074	G	A	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.2729	p.S910L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	383	1	0.26	291	201	40.85	-	-	-	A	69704074	G	A	69704074	3	1	569	1	0	0	0	0	1	0	0	0	16	1059	37	1	164	1	AAK1	2	69704074	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8272347	69704074	173495299	215	50171										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71185491	71185491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agggacatcagggatcgatgCcaggaagaccacttgcgaat	13	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	71185491	71185491	C	T	SNP	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	missense	c.302	p.A101V	1.000	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	152	0	0	130	71	35.32	-	-	-	T	71185491	C	T	71185491	3	4	569	1	0	0	0	0	1	0	0	0	1182	739	26	4	316	4	ATP6V1B1	2	71185491	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1481417	71185491	172013882	216	50172										
DYSF	0	genome.wustl.edu	37	chr2	71791210	71791210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagaacagcctgccggacaTcgtcatctggatgctgcagg	12	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	71791210	71791210	T	C	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.2471	p.I824T	0.832	pfam_Ferlin_B-domain	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	126	0	0	99	41	29.29	-	-	-	C	71791210	T	C	71791210	3	2	569	1	0	0	0	0	1	0	0	0	4894	1435	50	5	2664	5	DYSF	2	71791210	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	605719	71791210	171408163	217	50173										
DYSF	0	genome.wustl.edu	37	chr2	71797948	71797948	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacagatgcagacctgcatgCccacagacacatgcatgtgt	9	13	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	71797948	71797948	C	G	SNP	DYSF	ENST00000461565	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DYSF	HGNC	ENSG00000135636	103	0	0	94	37	28.24	-	-	-	G	71797948	C	G	71797948	1	3	569	0	1	0	0	0	0	0	0	0	4894	754	26	4		4	DYSF	2	71797948	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6738	71797948	171401425	218	50174										
DYSF	0	genome.wustl.edu	37	chr2	71839797	71839797	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccagggaggagctctactgCccccccatcaccgtcaaggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	71839797	71839797	C	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	frame_shift_del	c.4287	p.I1432fs	0.989	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	77	0	0	57	23	28.75	-	-	-	-	71839797	C	-	71839797	7	5	569	1	0	1	0	1	0	0	0	0	4894	747	26	0	4540	0	DYSF	2	71839797	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	41849	71839797	171359576	219	50175										
TPRKB	0	genome.wustl.edu	37	chr2	73959365	73959365	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atttttcccagtttgtagagGtgaactgctttgtttgctgc	10	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	73959365	73959365	G	C	SNP	TPRKB	ENST00000272424	human	ensembl	69_37n	-1	known	missense	c.189	p.H63Q	0.995	pfam_Kinase-bd_CGI-121	pfam_Kinase-bd_CGI-121	-	no_errors	TPRKB	HGNC	ENSG00000144034	494	0	0	338	158	31.79	-	-	-	C	73959365	G	C	73959365	3	2	569	1	0	0	0	0	1	0	0	0	16516	1252	44	4	350	4	TPRKB	2	73959365	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2119568	73959365	169240008	220	50176										
LRRTM4	0	genome.wustl.edu	37	chr2	77746929	77746929	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccgtgagcataacaagcagCagtgtaggaagtagcaccag	12	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	77746929	77746929	C	A	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	silent	c.69	p.L23	0.977	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	213	0	0	144	81	36	-	-	-	A	77746929	C	A	77746929	2	1	569	1	0	0	0	0	0	0	0	1	9108	697	25	4		4	LRRTM4	2	77746929	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3787564	77746929	165452444	221	50177										
ANKRD36B	0	genome.wustl.edu	37	chr2	98197016	98197016	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgactcacagcaagtaacaGtggctgatattcattctgta	8	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	98197016	98197016	G	A	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	501	0	0	362	206	36.14	-	-	-	A	98197016	G	A	98197016	1	1	569	0	1	0	0	0	0	0	0	0	665	1020	36	4		4	ANKRD36B	2	98197016	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	20450087	98197016	145002357	222	50178										
CNGA3	0	genome.wustl.edu	37	chr2	99013208	99013209	+	Frame_Shift_Ins	INS	-	-	AA													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtacatcatcaacgagggcINSaagctggccgtggtggctga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	99013208	99013209	-	AA	INS	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	frame_shift_ins	c.1575_1576	p.L526fs	1.000:1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	168	0	0	102	39	27.66	-	-	-	AA	99013209	-	AA	99013208	7	5	569	1	0	1	1	0	0	0	0	0	3628	697	25	0	1601	0	CNGA3	2	99013208	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	816192	99013208	144186165	223	50179										
REV1	0	genome.wustl.edu	37	chr2	100019234	100019234	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcaaactagaaaggcctggCacacctgaagtagaagcaga	11	9	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	100019234	100019234	C	G	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	silent	c.3414	p.V1138	0.000	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	214	0	0	153	79	33.76	-	-	-	G	100019234	C	G	100019234	2	3	569	1	0	0	0	0	0	0	0	1	13322	697	25	4		4	REV1	2	100019234	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1006026	100019234	143180139	224	50180										
REV1	0	genome.wustl.edu	37	chr2	100055545	100055545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcaacactgttgaccatgGgcaccaagcaatcctgtgtc	10	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	100055545	100055545	G	A	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	missense	c.731	p.P244L	0.899	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	134	0	0	102	58	35.8	-	-	-	A	100055545	G	A	100055545	3	1	569	1	0	0	0	0	1	0	0	0	13322	1232	43	4	3096	4	REV1	2	100055545	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	36311	100055545	143143828	225	50181										
NPAS2	0	genome.wustl.edu	37	chr2	101594239	101594239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctcagaccgttctgcagaGcacgcccgctcccatggcac	10	18	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	101594239	101594239	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	1	known	missense	c.1655	p.S552N	0.462	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	186	0	0	124	67	35.08	-	-	-	A	101594239	G	A	101594239	3	1	569	1	0	0	0	0	1	0	0	0	10635	971	34	4	1514	4	NPAS2	2	101594239	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1538694	101594239	141605134	226	50182										
SULT1C3	0	genome.wustl.edu	37	chr2	108881321	108881321	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagatactgaagttcctggAaaaagacatatcagaggaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	108881321	108881321	A	-	DEL	SULT1C3	ENST00000329106	human	ensembl	69_37n	1	known	frame_shift_del	c.662	p.D223fs	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1C3	HGNC	ENSG00000196228	219	0	0	160	80	33.06	-	-	-	-	108881321	A	-	108881321	7	5	569	1	0	1	0	1	0	0	0	0	15469	246	9	0	684	0	SULT1C3	2	108881321	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	7287082	108881321	134318052	227	50183										
NPHP1	0	genome.wustl.edu	37	chr2	110902119	110902119	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atacctttttcataaggagtAccaccattcaagaaaagctc	5	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	110902119	110902119	A	G	SNP	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	silent	c.1548	p.G516	0.985	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	188	0	0	178	86	32.58	-	-	-	G	110902119	A	G	110902119	2	3	569	1	0	0	0	0	0	0	0	1	10651	378	14	5		5	NPHP1	2	110902119	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2020798	110902119	132297254	228	50184										
ANAPC1	0	genome.wustl.edu	37	chr2	112592360	112592360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcctcatccttcatctgtgaAgcttctgaaggactcagaca	7	12	5	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	112592360	112592360	A	G	SNP	ANAPC1	ENST00000427997	human	ensembl	69_37n	-1	novel	missense	c.808	p.F270L	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC1	HGNC	ENSG00000153107	173	0	0	106	81	43.32	-	-	-	G	112592360	A	G	112592360	3	3	569	1	0	0	0	0	1	0	0	0	598	59	3	5	3749	5	ANAPC1	2	112592360	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1690241	112592360	130607013	229	50185										
CKAP2L	0	genome.wustl.edu	37	chr2	113513917	113513917	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtttggatgtctgttgttaTattcaccctgaagcaaactg	9	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	113513917	113513917	T	C	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.1031	p.Y344C	0.000	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	344	0	0	204	151	42.54	-	-	-	C	113513917	T	C	113513917	3	2	569	1	0	0	0	0	1	0	0	0	3473	1406	49	5	1230	5	CKAP2L	2	113513917	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	921557	113513917	129685456	230	50186										
DDX18	0	genome.wustl.edu	37	chr2	118577295	118577295	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccgagactactaaagaaacAgaaaataatgtggagaagcc	10	7	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	118577295	118577295	A	G	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	silent	c.441	p.T147	0.051	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	292	0	0	198	132	40	-	-	-	G	118577295	A	G	118577295	2	3	569	1	0	0	0	0	0	0	0	1	4376	175	7	5		5	DDX18	2	118577295	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	5063378	118577295	124622078	231	50187										
CLASP1	0	genome.wustl.edu	37	chr2	122363401	122363401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatagtctatcagttcttggCcaacctgcaatcgtttcccc	6	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	122363401	122363401	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	missense	c.71	p.G24D	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	333	1	0.3	228	136	37.16	-	-	-	T	122363401	C	T	122363401	3	4	569	1	0	0	0	0	1	0	0	0	3484	739	26	4	4753	4	CLASP1	2	122363401	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3786106	122363401	120835972	232	50188										
POTEF	0	genome.wustl.edu	37	chr2	130832949	130832949	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggtatcatcatccatggtgAgctcattcaattgtagagcc	9	10	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	130832949	130832949	A	G	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2096	p.L699P	0.979	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	275	0	0	203	103	33.55	-	-	-	G	130832949	A	G	130832949	3	3	569	1	0	0	0	0	1	0	0	0	12339	304	11	5	1135	5	POTEF	2	130832949	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	8469548	130832949	112366424	233	50189										
TUBA3E	0	genome.wustl.edu	37	chr2	130952658	130952658	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccttctcttcttaccagtttGcggatccggtccaggactag	9	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	130952658	130952658	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	silent	c.369	p.R123	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	400	0	0	252	208	45.22	-	-	-	A	130952658	G	A	130952658	2	1	569	1	0	0	0	0	0	0	0	1	16845	1306	46	4		4	TUBA3E	2	130952658	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	119709	130952658	112246715	234	50190										
TUBA3D	0	genome.wustl.edu	37	chr2	132235829	132235829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgaacatggaattcagccCgatggccaaatgccaagtga	10	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	132235829	132235829	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	69_37n	1	known	silent	c.96	p.P32	0.969	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	451	1	0.22	299	153	33.85	-	-	-	T	132235829	C	T	132235829	2	4	569	1	0	0	0	0	0	0	0	1	16844	639	23	1		1	TUBA3D	2	132235829	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1283171	132235829	110963544	235	50191										
LRP1B	0	genome.wustl.edu	37	chr2	141259407	141259407	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactgggaatgcacctgccaTttttgcacataaaaaatgaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	141259407	141259407	T	-	DEL	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	frame_shift_del	c.8699	p.N2900fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	200	0	0	157	88	35.48	-	-	-	-	141259407	T	-	141259407	7	5	569	1	0	1	0	1	0	0	0	0	9021	1493	52	0	5248	0	LRP1B	2	141259407	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	9023578	141259407	101939966	236	50192										
RND3	0	genome.wustl.edu	37	chr2	151331469	151331469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atccgaatcagggtaagagaGggggcggacattgtcatagt	15	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	151331469	151331469	G	T	SNP	RND3	ENST00000263895	human	ensembl	69_37n	-1	known	missense	c.268	p.L90I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963	332	0	0	188	112	37.33	-	-	-	T	151331469	G	T	151331469	3	4	569	1	0	0	0	0	1	0	0	0	13507	1000	35	4	478	4	RND3	2	151331469	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	10072062	151331469	91867904	237	50193										
RIF1	0	genome.wustl.edu	37	chr2	152289601	152289601	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcttttaagatatactatgTagtgcaaaaagactcaagtt	6	5	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	152289601	152289601	T	C	SNP	RIF1	ENST00000414861	human	ensembl	69_37n	1	novel	nonstop	c.910	p.*304Q	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIF1	HGNC	ENSG00000080345	291	0	0	204	112	35.44	-	-	-	C	152289601	T	C	152289601	4	2	569	1	0	0	0	0	0	0	0	0	13443	1644	57	5	970	5	RIF1	2	152289601	Nonstop_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	958132	152289601	90909772	238	50194										
LY75	0	genome.wustl.edu	37	chr2	160692127	160692127	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgactaaaatgaagacgtttCccatctgaccaaccaaagtt	6	11	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	160692127	160692127	C	A	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	silent	c.3537	p.G1179	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	152	0	0	89	81	47.65	-	-	-	A	160692127	C	A	160692127	2	1	569	1	0	0	0	0	0	0	0	1	9166	842	30	2		2	LY75	2	160692127	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8402526	160692127	82507246	239	50195										
ITGB6	0	genome.wustl.edu	37	chr2	160980367	160980367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacattcttctcgggcttggCcagctgctgacaggtggcac	12	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	160980367	160980367	C	T	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	missense	c.1916	p.G639D	0.996	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	257	0	0	184	140	43.21	-	-	-	T	160980367	C	T	160980367	3	4	569	1	0	0	0	0	1	0	0	0	7953	739	26	4	466	4	ITGB6	2	160980367	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	288240	160980367	82219006	240	50196										
SCN1A	0	genome.wustl.edu	37	chr2	166848778	166848778	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaggccgatgttaaacaaCgcaggaagggacatcatcaa	12	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	166848778	166848778	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	silent	c.5007	p.A1669	0.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	691	1	0.14	432	220	33.74	-	-	-	T	166848778	C	T	166848778	2	4	569	1	0	0	0	0	0	0	0	1	14002	523	19	1		1	SCN1A	2	166848778	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5868411	166848778	76350595	241	50197										
UBR3	0	genome.wustl.edu	37	chr2	170885882	170885882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtttcatgtattagccttgCacatgcggctttatagcatt	8	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	170885882	170885882	C	T	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.4480	p.H1494Y	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	216	1	0.46	182	97	34.77	-	-	-	T	170885882	C	T	170885882	3	4	569	1	0	0	0	0	1	0	0	0	17000	710	25	4	4602	4	UBR3	2	170885882	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4037104	170885882	72313491	242	50198										
DCAF17	0	genome.wustl.edu	37	chr2	172325520	172325520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaggagttttccatatttgtGccctaaaagacaattccctg	7	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	172325520	172325520	G	A	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	1	known	missense	c.961	p.A321T	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	166	0	0	90	52	36.62	-	-	-	A	172325520	G	A	172325520	3	1	569	1	0	0	0	0	1	0	0	0	4301	1319	46	4	995	4	DCAF17	2	172325520	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1439638	172325520	70873853	243	50199										
WIPF1	0	genome.wustl.edu	37	chr2	175437136	175437137	+	Frame_Shift_Ins	INS	-	-	AT													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcgcagatgtggatcttccINStcccggtggcaacaatggtg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	175437136	175437137	-	AT	INS	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	frame_shift_ins	c.397_396	p.G132fs	1.000:1.000	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	130	0	0	100	23	18.7	-	-	-	AT	175437137	-	AT	175437136	7	5	569	1	0	1	1	0	0	0	0	0	17464	690	24	0	1130	0	WIPF1	2	175437136	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	3111616	175437136	67762237	244	50200	421	2								
WIPF1	0	genome.wustl.edu	37	chr2	175437138	175437141	+	Frame_Shift_Del	DEL	CCCG	CCCG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgcagatgtggatcttcctCccggtggcaacaatggtggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	CCCG	CCCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	175437138	175437141	CCCG	-	DEL	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	frame_shift_del	c.395_392	p.P131fs	1.000:1.000:0.384:1.000	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	126	0	0	95	23	19.17	-	-	-	-	175437141	CCCG	-	175437138	7	5	569	1	0	1	0	1	0	0	0	0	17464	855	30	0	1132	0	WIPF1	2	175437138	Frame_Shift_Del	DEL	CCCG	TCGA-BH-A18G-01A-11D-A12B-09	2	175437138	67762235	245	50201	421	2								
HOXD8	0	genome.wustl.edu	37	chr2	176995417	176995417	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccgctgcctaccaggccgCcccccctcctcctccgcatc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	176995417	176995417	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	69_37n	1	known	frame_shift_del	c.323	p.P110fs	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD8	HGNC	ENSG00000175879	12	0	0	9	4	30.77	-	-	-	-	176995417	C	-	176995417	7	5	569	1	0	1	0	1	0	0	0	0	7376	739	26	0	325	0	HOXD8	2	176995417	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1558279	176995417	66203956	246	50202										
TTN	0	genome.wustl.edu	37	chr2	179452813	179452813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatcaggagacgcatctgcTatttttggtctcatttccac	7	11	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	179452813	179452813	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.55617	p.I18539M	0.001	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	217	1	0.46	147	88	37.45	-	-	-	C	179452813	T	C	179452813	3	2	569	1	0	0	0	0	1	0	0	0	16832	1512	53	5	44890	5	TTN	2	179452813	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2457396	179452813	63746560	247	50203										
TTN	0	genome.wustl.edu	37	chr2	179489400	179489400	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttcacactccagcactgcAgtggctccctcttcgaccgt	7	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	179489400	179489400	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.36903	p.T12301	0.994	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	128	0	0	86	55	39.01	-	-	-	G	179489400	A	G	179489400	2	3	569	1	0	0	0	0	0	0	0	1	16832	175	7	5		5	TTN	2	179489400	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	36587	179489400	63709973	248	50204										
TTN	0	genome.wustl.edu	37	chr2	179612822	179612823	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcttttcctcacttgctgcINSttttttcaaatgtgagatgg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	179612822	179612823	-	T	INS	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	frame_shift_ins	c.14305_14304	p.A4768fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	268	0	0	232	124	34.83	-	-	-	T	179612823	-	T	179612822	7	5	569	1	0	1	1	0	0	0	0	0	16832	797	28	0	95992	0	TTN	2	179612822	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	123422	179612822	63586551	249	50205										
ITGAV	0	genome.wustl.edu	37	chr2	187521085	187521085	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caagaacatgactatttcaaGggggggactgatgcagtgtg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	187521085	187521085	G	-	DEL	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	frame_shift_del	c.1676	p.G561fs	0.609	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	649	1	0.15	503	229	30.61	-	-	-	-	187521085	G	-	187521085	7	5	569	1	0	1	0	1	0	0	0	0	7942	1000	35	0	1793	0	ITGAV	2	187521085	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	7908263	187521085	55678288	250	50206										
ITGAV	0	genome.wustl.edu	37	chr2	187531911	187531911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaaagtaagcccagttgtaTctcacaaagttgatcttgct	7	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	187531911	187531911	T	C	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	missense	c.2281	p.S761P	0.968	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	440	0	0	319	205	38.97	-	-	-	C	187531911	T	C	187531911	3	2	569	1	0	0	0	0	1	0	0	0	7942	1435	50	5	2422	5	ITGAV	2	187531911	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	10826	187531911	55667462	251	50207										
COL3A1	0	genome.wustl.edu	37	chr2	189874938	189874938	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccctaaccaaggatgcaaAttggatgctatcaaggtatt	9	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	189874938	189874938	A	T	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.3858	p.K1286N	0.024	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	311	0	0	170	116	40.56	-	-	-	T	189874938	A	T	189874938	3	4	569	1	0	0	0	0	1	0	0	0	3718	98	4	5	4052	5	COL3A1	2	189874938	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2343027	189874938	53324435	252	50208										
MYO1B	0	genome.wustl.edu	37	chr2	192252145	192252145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgtggccactctgatgaaaAacctacagaccaagaaccca	7	14	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	192252145	192252145	A	G	SNP	MYO1B	ENST00000304164	human	ensembl	69_37n	1	known	missense	c.1750	p.N584D	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	136	0	0	118	33	21.85	-	-	-	G	192252145	A	G	192252145	3	3	569	1	0	0	0	0	1	0	0	0	10141	14	1	5	1812	5	MYO1B	2	192252145	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2377207	192252145	50947228	253	50209										
CASP8	0	genome.wustl.edu	37	chr2	202131302	202131302	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgagcctggactacattccGcaaaggaagcaagaacccat	9	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	202131302	202131302	G	A	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	silent	c.270	p.P90	0.000	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	172	1	0.58	110	75	40.54	-	-	-	A	202131302	G	A	202131302	2	1	569	1	0	0	0	0	0	0	0	1	2702	1074	38	1		1	CASP8	2	202131302	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9879157	202131302	41068071	254	50210										
ALS2CR8	0	genome.wustl.edu	37	chr2	203848327	203848327	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaaaaaaactgtggactatAagaaattatctgctacataa	5	6	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	203848327	203848327	A	G	SNP	ALS2CR8	ENST00000320443	human	ensembl	69_37n	1	known	missense	c.2158	p.K720E	0.578	NULL	NULL	-	no_errors	ALS2CR8	HGNC	ENSG00000138380	163	0	0	173	31	15.12	-	-	-	G	203848327	A	G	203848327	3	3	569	1	0	0	0	0	1	0	0	0	555	363	13	5	2212	5	ALS2CR8	2	203848327	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1717025	203848327	39351046	255	50211										
NRP2	0	genome.wustl.edu	37	chr2	206608157	206608157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatcatccagggagcccgcGgaggagacagtatcactgct	12	12	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	206608157	206608157	G	A	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.1522	p.G508R	0.999	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	134	0	0	75	56	42.75	-	-	-	A	206608157	G	A	206608157	3	1	569	1	0	0	0	0	1	0	0	0	10734	1117	39	1	1556	1	NRP2	2	206608157	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2759830	206608157	36591216	256	50212										
INO80D	0	genome.wustl.edu	37	chr2	206920991	206920991	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcaccagtctctgcagtcGgcttatacatgagaagtgtg	10	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	206920991	206920991	G	A	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	nonsense	c.895	p.R299*	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	246	0	0	167	95	36.26	-	-	-	A	206920991	G	A	206920991	4	1	569	1	0	0	0	0	0	1	0	0	7803	1124	39	1	2220	1	INO80D	2	206920991	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	312834	206920991	36278382	257	50213										
ZDBF2	0	genome.wustl.edu	37	chr2	207174377	207174377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgtcagtctagtgcttctGcagtggattttggtgcctct	12	9	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	207174377	207174377	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.5125	p.A1709T	0.002	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	222	0	0	155	97	38.49	-	-	-	A	207174377	G	A	207174377	3	1	569	1	0	0	0	0	1	0	0	0	17695	1319	46	4	5135	4	ZDBF2	2	207174377	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	253386	207174377	36024996	258	50214										
IKZF2	0	genome.wustl.edu	37	chr2	214013359	214013359	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcctctgtttccatagtcaAagtgcaatgctgcaaaacaa	7	10	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	214013359	214013359	A	G	SNP	IKZF2	ENST00000342002	human	ensembl	69_37n	-1	putative	silent	c.13	p.L5	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419	245	0	0	195	82	29.6	-	-	-	G	214013359	A	G	214013359	2	3	569	1	0	0	0	0	0	0	0	1	7669	29	1	5		5	IKZF2	2	214013359	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6838982	214013359	29186014	259	50215										
STK16	0	genome.wustl.edu	37	chr2	220111841	220111841	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacttgtgttgcagagaggtAcgctgtggaatgagatagaa	14	4	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	220111841	220111841	A	G	SNP	STK16	ENST00000396738	human	ensembl	69_37n	1	known	missense	c.313	p.T105A	0.990	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK16	HGNC	ENSG00000115661	247	0	0	159	100	38.61	-	-	-	G	220111841	A	G	220111841	3	3	569	1	0	0	0	0	1	0	0	0	15380	391	14	5	323	5	STK16	2	220111841	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6098482	220111841	23087532	260	50216										
STK11IP	0	genome.wustl.edu	37	chr2	220473024	220473024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatgtcagaggaggtcagggCggagccacaggaggaggaag	19	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	220473024	220473024	C	T	SNP	STK11IP	ENST00000456909	human	ensembl	69_37n	1	novel	missense	c.1475	p.A492V	0.000	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	42	0	0	23	20	44.44	-	-	-	T	220473024	C	T	220473024	3	4	569	1	0	0	0	0	1	0	0	0	15379	768	27	1	1562	1	STK11IP	2	220473024	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	361183	220473024	22726349	261	50217										
SLC4A3	0	genome.wustl.edu	37	chr2	220494034	220494035	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccctcccatccaggaggaINSggggggagctggagtggatg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	220494034	220494035	-	G	INS	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	frame_shift_ins	c.386_387	p.A132fs	1.000:1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	80	0	0	58	26	30.95	-	-	-	G	220494035	-	G	220494034	7	5	569	1	0	1	1	0	0	0	0	0	14744	304	11	0	396	0	SLC4A3	2	220494034	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	21010	220494034	22705339	262	50218										
EPHA4	0	genome.wustl.edu	37	chr2	222428573	222428573	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttctcttctgagttgttgAcacaggagcctcgaacttcc	8	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	222428573	222428573	A	G	SNP	EPHA4	ENST00000281821	human	ensembl	69_37n	-1	known	missense	c.701	p.V234A	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	984	0	0	624	411	39.6	-	-	-	G	222428573	A	G	222428573	3	3	569	1	0	0	0	0	1	0	0	0	5206	275	10	5	2319	5	EPHA4	2	222428573	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1934539	222428573	20770800	263	50219										
CUL3	0	genome.wustl.edu	37	chr2	225376276	225376276	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tatactgaagcactattttcTgctaaaaatttctggctttc	5	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	225376276	225376276	T	C	SNP	CUL3	ENST00000264414	human	ensembl	69_37n	-1	known	silent	c.678	p.A226	0.999	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	193	0	0	142	86	37.72	-	-	-	C	225376276	T	C	225376276	2	2	569	1	0	0	0	0	0	0	0	1	4087	1567	55	5		5	CUL3	2	225376276	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2947703	225376276	17823097	264	50220										
SP100	0	genome.wustl.edu	37	chr2	231379990	231379990	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atatccctcctaaaggggagAaaaaaaagaagttcaaggat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	231379990	231379990	A	-	DEL	SP100	ENST00000264052	human	ensembl	69_37n	1	known	frame_shift_del	c.2275	p.K761fs	1.000	superfamily_HMG_superfamily	pfam_Sp100,pfam_SAND_dom,pfam_HMG_superfamily,superfamily_SAND_dom-like,superfamily_HMG_superfamily,smart_SAND_dom,smart_HMG_superfamily,pfscan_SAND_dom,pfscan_HMG_superfamily	-	no_errors	SP100	HGNC	ENSG00000067066	318	1	0.31	210	100	31.85	-	-	-	-	231379990	A	-	231379990	7	5	569	1	0	1	0	1	0	0	0	0	15049	247	9	0	2373	0	SP100	2	231379990	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	6003714	231379990	11819383	265	50221										
SP100	0	genome.wustl.edu	37	chr2	231380093	231380093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatcaaaggagaacatcctgGcctgtccattgatgatgttg	10	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	231380093	231380093	G	A	SNP	SP100	ENST00000264052	human	ensembl	69_37n	1	known	missense	c.2378	p.G793D	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Sp100,pfam_SAND_dom,pfam_HMG_superfamily,superfamily_SAND_dom-like,superfamily_HMG_superfamily,smart_SAND_dom,smart_HMG_superfamily,pfscan_SAND_dom,pfscan_HMG_superfamily	-	no_errors	SP100	HGNC	ENSG00000067066	191	1	0.52	111	69	38.33	-	-	-	A	231380093	G	A	231380093	3	1	569	1	0	0	0	0	1	0	0	0	15049	1203	42	4	2476	4	SP100	2	231380093	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	103	231380093	11819280	266	50222										
ALPP	0	genome.wustl.edu	37	chr2	233244618	233244618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggtgccaggacatcgctaCgcagctcatctccaacatgg	12	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	233244618	233244618	C	T	SNP	ALPP	ENST00000392027	human	ensembl	69_37n	1	known	missense	c.629	p.T210M	0.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283	58	0	0	27	11	28.95	-	-	-	T	233244618	C	T	233244618	3	4	569	1	0	0	0	0	1	0	0	0	548	536	19	1	647	1	ALPP	2	233244618	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1864525	233244618	9954755	267	50223										
CHRND	0	genome.wustl.edu	37	chr2	233396354	233396354	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcacccatgtgctgtctgaGggggtcaagaaggtgagtac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	233396354	233396354	G	-	DEL	CHRND	ENST00000258385	human	ensembl	69_37n	1	known	frame_shift_del	c.1035	p.V347fs	0.012	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902	127	0	0	85	49	36.57	-	-	-	-	233396354	G	-	233396354	7	5	569	1	0	1	0	1	0	0	0	0	3423	991	35	0	1069	0	CHRND	2	233396354	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	151736	233396354	9803019	268	50224										
SAG	0	genome.wustl.edu	37	chr2	234229296	234229296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtatgtcactctgacctgcGccttccgctatggccaagag	10	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	234229296	234229296	G	A	SNP	SAG	ENST00000409110	human	ensembl	69_37n	1	known	missense	c.202	p.A68T	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561	94	0	0	79	38	29.92	-	-	-	A	234229296	G	A	234229296	3	1	569	1	0	0	0	0	1	0	0	0	13894	1087	38	1	216	1	SAG	2	234229296	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	832942	234229296	8970077	269	50225										
DGKD	0	genome.wustl.edu	37	chr2	234356734	234356734	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatttggggtgattgcaggTacagcagattctcttctatg	11	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	234356734	234356734	T	C	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.1421	p.V474A	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	154	0	0	114	63	35.59	-	-	-	C	234356734	T	C	234356734	3	2	569	1	0	0	0	0	1	0	0	0	4503	1652	57	5	1495	5	DGKD	2	234356734	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	127438	234356734	8842639	270	50226										
UGT1A4	0	genome.wustl.edu	37	chr2	234681079	234681079	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taccattccttggacgtgatTggtttcctcttggccgtcgt	10	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	234681079	234681079	T	C	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1479	p.I493	0.016	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	413	0	0	250	151	37.47	-	-	-	C	234681079	T	C	234681079	2	2	569	1	0	0	0	0	0	0	0	1	17044	1800	63	5		5	UGT1A4	2	234681079	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	324345	234681079	8518294	271	50227										
COL6A3	0	genome.wustl.edu	37	chr2	238234210	238234210	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagaatcacttaccaggagcGcaaaccttttcacattcttt	5	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	238234210	238234210	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.9486	p.C3162	0.005	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	331	1	0.3	232	132	36.16	-	-	-	A	238234210	G	A	238234210	2	1	569	1	0	0	0	0	0	0	0	1	3731	1079	38	1		1	COL6A3	2	238234210	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3553131	238234210	4965163	272	50228										
MLPH	0	genome.wustl.edu	37	chr2	238419703	238419703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttcaagaggttcggaagtgCcaaggtcatccggtccctcc	11	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	238419703	238419703	C	T	SNP	MLPH	ENST00000264605	human	ensembl	69_37n	1	known	missense	c.404	p.A135V	1.000	NULL	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MLPH	HGNC	ENSG00000115648	184	0	0	121	70	36.46	-	-	-	T	238419703	C	T	238419703	3	4	569	1	0	0	0	0	1	0	0	0	9704	739	26	4	414	4	MLPH	2	238419703	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	185493	238419703	4779670	273	50229										
MLPH	0	genome.wustl.edu	37	chr2	238436066	238436066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcccctgcagtacttggcCgatgtggacacctctgatga	11	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	238436066	238436066	C	T	SNP	MLPH	ENST00000436965	human	ensembl	69_37n	1	novel	missense	c.173	p.P58L	0.982	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLPH	HGNC	ENSG00000115648	146	0	0	113	51	31.1	-	-	-	T	238436066	C	T	238436066	3	4	569	1	0	0	0	0	1	0	0	0	9704	639	23	1	953	1	MLPH	2	238436066	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	16363	238436066	4763307	274	50230										
RBM44	0	genome.wustl.edu	37	chr2	238725800	238725800	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaatggatttattagagccaTttttttcagtgagtcaagat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	238725800	238725800	T	-	DEL	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	frame_shift_del	c.241	p.S83fs	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	85	0	0	69	36	33.96	-	-	-	-	238725800	T	-	238725800	7	5	569	1	0	1	0	1	0	0	0	0	13221	1493	52	0	247	0	RBM44	2	238725800	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	289734	238725800	4473573	275	50231										
ANKMY1	0	genome.wustl.edu	37	chr2	241496666	241496666	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcctcggcagcaggggtctcGccgcccttcccctctagcgg	12	18	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	241496666	241496666	G	A	SNP	ANKMY1	ENST00000361678	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	0.000	NULL	pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504	19	0	0	13	12	46.15	-	-	-	A	241496666	G	A	241496666	2	1	569	1	0	0	0	0	0	0	0	1	634	1074	38	1		1	ANKMY1	2	241496666	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2770866	241496666	1702707	276	50232										
PASK	0	genome.wustl.edu	37	chr2	242082328	242082328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtctgtgggctgaggaaaaCgacctgctgggctcagcagt	15	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	2	242082328	242082328	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	silent	c.120	p.S40	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	152	0	0	105	56	34.78	-	-	-	T	242082328	C	T	242082328	2	4	569	1	0	0	0	0	0	0	0	1	11545	523	19	1		1	PASK	2	242082328	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	585662	242082328	1117045	277	50233										
CNTN4	0	genome.wustl.edu	37	chr3	3067928	3067928	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggacacctgatagactttgaCagagatggggaccactttga	12	8	0	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	3067928	3067928	C	T	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	silent	c.1629	p.D543	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	369	0	0	271	123	31.22	-	-	-	T	3067928	C	T	3067928	2	4	569	1	0	0	0	0	0	0	0	1	3673	477	17	4		4	CNTN4	3	3067928	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		3067928	194954502	278	50234										
IL5RA	0	genome.wustl.edu	37	chr3	3139881	3139881	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccaacaagccaggtgcagTgaagggaaacttggtatgac	13	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	3139881	3139881	T	C	SNP	IL5RA	ENST00000256452	human	ensembl	69_37n	-1	known	missense	c.461	p.H154R	0.174	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181	625	3	0.48	399	232	36.71	-	-	-	C	3139881	T	C	3139881	3	2	569	1	0	0	0	0	1	0	0	0	7754	1696	59	5	855	5	IL5RA	3	3139881	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	71953	3139881	194882549	279	50235										
ITPR1	0	genome.wustl.edu	37	chr3	4841971	4841971	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggactggttatggatggggCagagaatttgaggtgagagt	19	2	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	4841971	4841971	C	T	SNP	ITPR1	ENST00000490572	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITPR1	HGNC	ENSG00000150995	14	0	0	12	6	30	-	-	-	T	4841971	C	T	4841971	1	4	569	0	1	0	0	0	0	0	0	0	7974	725	25	4		4	ITPR1	3	4841971	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1702090	4841971	193180459	280	50236										
LMCD1	0	genome.wustl.edu	37	chr3	8609226	8609226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgctgagcggccgggcgtAcatcgtcaccaagggtcagc	15	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	8609226	8609226	A	G	SNP	LMCD1	ENST00000157600	human	ensembl	69_37n	1	known	missense	c.1040	p.Y347C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282	127	1	0.78	95	57	37.5	-	-	-	G	8609226	A	G	8609226	3	3	569	1	0	0	0	0	1	0	0	0	8900	391	14	5	1062	5	LMCD1	3	8609226	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3767255	8609226	189413204	281	50237										
MTMR14	0	genome.wustl.edu	37	chr3	9714435	9714435	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcactctcctctccatcccGtatccaggtagggggctctc	8	16	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	9714435	9714435	G	A	SNP	MTMR14	ENST00000296003	human	ensembl	69_37n	1	known	silent	c.744	p.P248	0.416	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719	240	0	0	191	90	32.03	-	-	-	A	9714435	G	A	9714435	2	1	569	1	0	0	0	0	0	0	0	1	10014	1132	40	1		1	MTMR14	3	9714435	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1105209	9714435	188307995	282	50238										
TTLL3	0	genome.wustl.edu	37	chr3	9860332	9860332	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagtgctgggattacaggcGtcagccaccgtgaccagcct	12	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	9860332	9860332	G	A	SNP	TTLL3	ENST00000474948	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TTLL3	HGNC	ENSG00000214021	19	0	0	8	7	46.67	-	-	-	A	9860332	G	A	9860332	1	1	569	0	1	0	0	0	0	0	0	0	16825	1160	40	1		1	TTLL3	3	9860332	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	145897	9860332	188162098	283	50239										
FGD5	0	genome.wustl.edu	37	chr3	14862972	14862972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggagacctgccagggctggCgcgttcacgaagctgtttga	15	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	14862972	14862972	C	T	SNP	FGD5	ENST00000457774	human	ensembl	69_37n	1	putative	missense	c.34	p.R12C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGD5	HGNC	ENSG00000154783	105	0	0	62	31	33.33	-	-	-	T	14862972	C	T	14862972	3	4	569	1	0	0	0	0	1	0	0	0	5882	755	27	1	2396	1	FGD5	3	14862972	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5002640	14862972	183159458	284	50240										
SATB1	0	genome.wustl.edu	37	chr3	18436303	18436303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgccatgggagagctgcGcaggggatggaggctgctcg	20	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	18436303	18436303	G	A	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.857	p.A286V	0.733	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	246	0	0	183	85	31.48	-	-	-	A	18436303	G	A	18436303	3	1	569	1	0	0	0	0	1	0	0	0	13940	1087	38	1	1454	1	SATB1	3	18436303	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3573331	18436303	179586127	285	50241										
NGLY1	0	genome.wustl.edu	37	chr3	25761040	25761040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagctgggtgtgttgccaagCgacatcaccatctcctctgc	10	14	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	25761040	25761040	C	T	SNP	NGLY1	ENST00000280700	human	ensembl	69_37n	-1	known	missense	c.1876	p.A626T	1.000	superfamily_Galactose-bd-like	pfam_PUB_domain,pfam_Transglutaminase-like,pfam_Rad4/PNGase_transGLS-fold,pfam_Peptide_N_glycanase_PAW_dom,superfamily_Galactose-bd-like,smart_PUG-dom,smart_Transglutaminase-like,smart_Peptide_N_glycanase_PAW_dom	-	no_errors	NGLY1	HGNC	ENSG00000151092	327	0	0	207	116	35.91	-	-	-	T	25761040	C	T	25761040	3	4	569	1	0	0	0	0	1	0	0	0	10470	768	27	1	92	1	NGLY1	3	25761040	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7324737	25761040	172261390	286	50242										
GLB1	0	genome.wustl.edu	37	chr3	33075995	33075995	+	RNA	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtttgagatgtggcctgggCcccctccatcagcctgccca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	33075995	33075995	C	-	DEL	GLB1	ENST00000497796	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GLB1	HGNC	ENSG00000170266	117	0	0	84	41	31.78	-	-	-	-	33075995	C	-	33075995	6	5	569	0	1	1	0	1	0	0	0	0	6479	754	26	0		0	GLB1	3	33075995	RNA	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	7314955	33075995	164946435	287	50243										
GOLGA4	0	genome.wustl.edu	37	chr3	37365196	37365196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcacaataaggagattacaGtcatggttgaaaaacacaag	9	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	37365196	37365196	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.1819	p.V607I	0.333	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	98	0	0	33	43	56.58	-	-	-	A	37365196	G	A	37365196	3	1	569	1	0	0	0	0	1	0	0	0	6607	1029	36	4	1943	4	GOLGA4	3	37365196	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4289201	37365196	160657234	288	50244										
SCN5A	0	genome.wustl.edu	37	chr3	38616941	38616941	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagggacagcgccggacacaGcctatgggagagagtgaggg	18	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	38616941	38616941	G	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.3513	p.G1171	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	54	0	0	18	17	48.57	-	-	-	T	38616941	G	T	38616941	2	4	569	1	0	0	0	0	0	0	0	1	14010	985	34	4		4	SCN5A	3	38616941	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1251745	38616941	159405489	289	50245										
XIRP1	0	genome.wustl.edu	37	chr3	39227239	39227239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccagaggccagaatgtggCggcctagaggggcagtcttc	16	11	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	39227239	39227239	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.3698	p.R1233H	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	70	0	0	18	25	58.14	-	-	-	T	39227239	C	T	39227239	3	4	569	1	0	0	0	0	1	0	0	0	17526	768	27	1	1837	1	XIRP1	3	39227239	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	610298	39227239	158795191	290	50246										
ANO10	0	genome.wustl.edu	37	chr3	43408450	43408450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttcctccttcaggttctcgGtcacgagcttcatttgctgt	9	12	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	43408450	43408450	G	A	SNP	ANO10	ENST00000292246	human	ensembl	69_37n	-1	known	missense	c.1931	p.T644I	0.555	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	305	0	0	55	119	68.39	-	-	-	A	43408450	G	A	43408450	3	1	569	1	0	0	0	0	1	0	0	0	695	1261	44	4	55	4	ANO10	3	43408450	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4181211	43408450	154613980	291	50247										
HYAL3	0	genome.wustl.edu	37	chr3	50330902	50330902	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcacattgatcacatagggGcccaaggtgtccaccaggta	11	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	50330902	50330902	G	A	SNP	HYAL3	ENST00000336307	human	ensembl	69_37n	-1	known	silent	c.1029	p.G343	0.802	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL3	HGNC	ENSG00000186792	74	0	0	23	33	58.93	-	-	-	A	50330902	G	A	50330902	2	1	569	1	0	0	0	0	0	0	0	1	7519	1190	42	4		4	HYAL3	3	50330902	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6922452	50330902	147691528	292	50248										
CYB561D2	0	genome.wustl.edu	37	chr3	50391135	50391135	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttggtcattatgaaccaggTgagcaatgcctacctatacc	8	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	50391135	50391135	T	C	SNP	CYB561D2	ENST00000232508	human	ensembl	69_37n	1	known	missense	c.629	p.V210A	1.000	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYB561D2	HGNC	ENSG00000114395	47	0	0	4	31	88.57	-	-	-	C	50391135	T	C	50391135	3	2	569	1	0	0	0	0	1	0	0	0	4152	1696	59	5	639	5	CYB561D2	3	50391135	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	60233	50391135	147631295	293	50249										
ITIH4	0	genome.wustl.edu	37	chr3	52861123	52861123	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctcacttgacgaggccagcGctctttcccttggccactgc	10	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	52861123	52861123	G	A	SNP	ITIH4	ENST00000266041	human	ensembl	69_37n	-1	known	silent	c.342	p.S114	0.076	pfam_VIT,smart_VIT	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955	342	0	0	70	150	67.57	-	-	-	A	52861123	G	A	52861123	2	1	569	1	0	0	0	0	0	0	0	1	7960	1078	38	1		1	ITIH4	3	52861123	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2469988	52861123	145161307	294	50250										
CADPS	0	genome.wustl.edu	37	chr3	62739237	62739237	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcgctggctgtcatccggGcctgctgcttccgcgggtcc	14	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	62739237	62739237	G	A	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.767	p.A256V	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	69	0	0	64	36	34.95	-	-	-	A	62739237	G	A	62739237	3	1	569	1	0	0	0	0	1	0	0	0	2595	1203	42	4	3479	4	CADPS	3	62739237	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9878114	62739237	135283193	295	50251										
PDZRN3	0	genome.wustl.edu	37	chr3	73433945	73433945	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggaggatgcggtggcgtcgTcgccattgttctcttgctcc	14	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	73433945	73433945	T	C	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.1772	p.D591G	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	131	0	0	68	45	39.82	-	-	-	C	73433945	T	C	73433945	3	2	569	1	0	0	0	0	1	0	0	0	11782	1667	58	5	1432	5	PDZRN3	3	73433945	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	10694708	73433945	124588485	296	50252										
EPHA3	0	genome.wustl.edu	37	chr3	89448493	89448493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaagaaacaagttataccaTtctgagggcaagaggcacaa	9	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	89448493	89448493	T	C	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.1457	p.I486T	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	140	0	0	114	62	35.23	-	-	-	C	89448493	T	C	89448493	3	2	569	1	0	0	0	0	1	0	0	0	5205	1493	52	5	1483	5	EPHA3	3	89448493	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	16014548	89448493	108573937	297	50253										
FILIP1L	0	genome.wustl.edu	37	chr3	99567225	99567225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attggttgttttgtttagtgCcccgttaattaagccttgag	10	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	99567225	99567225	C	T	SNP	FILIP1L	ENST00000354552	human	ensembl	69_37n	-1	known	missense	c.3295	p.A1099T	0.987	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	900	2	0.22	543	325	37.4	-	-	-	T	99567225	C	T	99567225	3	4	569	1	0	0	0	0	1	0	0	0	5941	739	26	4	141	4	FILIP1L	3	99567225	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	10118732	99567225	98455205	298	50254										
NIT2	0	genome.wustl.edu	37	chr3	100057981	100057981	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcttccatcaaatcagatAacgtcactcgcgcttgtagc	6	12	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	100057981	100057981	A	G	SNP	NIT2	ENST00000394140	human	ensembl	69_37n	1	known	missense	c.58	p.N20D	0.997	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021	334	0	0	254	136	34.87	-	-	-	G	100057981	A	G	100057981	3	3	569	1	0	0	0	0	1	0	0	0	10506	362	13	5	64	5	NIT2	3	100057981	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	490756	100057981	97964449	299	50255										
TFG	0	genome.wustl.edu	37	chr3	100432553	100432553	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacggacagttggatctaagTgggaagctaatcatcaaagc	11	7	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	100432553	100432553	T	C	SNP	TFG	ENST00000240851	human	ensembl	69_37n	1	known	silent	c.24	p.S8	1.000	NULL	pfam_OPR_PB1,smart_OPR_PB1	-	no_errors	TFG	HGNC	ENSG00000114354	160	1	0.62	127	86	40.38	-	-	-	C	100432553	T	C	100432553	2	2	569	1	0	0	0	0	0	0	0	1	15901	1693	59	5		5	TFG	3	100432553	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	374572	100432553	97589877	300	50256										
BBX	0	genome.wustl.edu	37	chr3	107497243	107497244	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagctggatgaagaatttgINSaaaaaaaattcaacagcctc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	107497243	107497244	-	A	INS	BBX	ENST00000325805	human	ensembl	69_37n	1	known	frame_shift_ins	c.2080_2081	p.F697fs	1.000:1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	91	0	0	114	31	21.38	-	-	-	A	107497244	-	A	107497243	7	5	569	1	0	1	1	0	0	0	0	0	1347	1291	45	0	2118	0	BBX	3	107497243	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	7064690	107497243	90525187	301	50257										
TRAT1	0	genome.wustl.edu	37	chr3	108572596	108572596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcaactacatgcaatagatGccagcgtttctaagaccacc	7	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	108572596	108572596	G	A	SNP	TRAT1	ENST00000295756	human	ensembl	69_37n	1	known	missense	c.433	p.A145T	0.001	NULL	NULL	-	no_errors	TRAT1	HGNC	ENSG00000163519	205	0	0	154	102	39.69	-	-	-	A	108572596	G	A	108572596	3	1	569	1	0	0	0	0	1	0	0	0	16562	1319	46	4	455	4	TRAT1	3	108572596	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1075353	108572596	89449834	302	50258										
PHLDB2	0	genome.wustl.edu	37	chr3	111681100	111681100	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctttgatactctgagcctCgatagctctgatagcatgga	10	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	111681100	111681100	C	T	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	silent	c.3018	p.L1006	0.249	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	220	0	0	168	69	29.11	-	-	-	T	111681100	C	T	111681100	2	4	569	1	0	0	0	0	0	0	0	1	11926	871	31	1		1	PHLDB2	3	111681100	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3108504	111681100	86341330	303	50259										
FAM162A	0	genome.wustl.edu	37	chr3	122123122	122123122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taggcacttacaacagagtgCctttacacaaacctacggat	7	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	122123122	122123122	C	T	SNP	FAM162A	ENST00000477892	human	ensembl	69_37n	1	known	missense	c.175	p.P59S	1.000	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162A	HGNC	ENSG00000114023	190	0	0	144	90	38.46	-	-	-	T	122123122	C	T	122123122	3	4	569	1	0	0	0	0	1	0	0	0	5514	739	26	4	185	4	FAM162A	3	122123122	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	10442022	122123122	75899308	304	50260										
MYLK	0	genome.wustl.edu	37	chr3	123376171	123376171	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatctcgatgctgtaggactGtacagcactgcccccatcat	9	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	123376171	123376171	G	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	nonsense	c.4090	p.Q1364*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	244	0	0	167	119	41.61	-	-	-	A	123376171	G	A	123376171	4	1	569	1	0	0	0	0	0	1	0	0	10128	1386	48	4	1698	4	MYLK	3	123376171	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1253049	123376171	74646259	305	50261										
MYLK	0	genome.wustl.edu	37	chr3	123401149	123401149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccttggtgttctcactggCtggagcatctggaatgaaac	13	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	123401149	123401149	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.3574	p.A1192T	0.001	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	239	0	0	148	75	33.63	-	-	-	T	123401149	C	T	123401149	3	4	569	1	0	0	0	0	1	0	0	0	10128	797	28	4	2230	4	MYLK	3	123401149	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	24978	123401149	74621281	306	50262										
CCDC14	0	genome.wustl.edu	37	chr3	123650066	123650066	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggagcttttcacattgactAgggcttcctccaattctaaa	8	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	123650066	123650066	A	G	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.1805	p.L602P	0.996	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	183	0	0	142	72	33.64	-	-	-	G	123650066	A	G	123650066	3	3	569	1	0	0	0	0	1	0	0	0	2798	420	15	5	1064	5	CCDC14	3	123650066	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	248917	123650066	74372364	307	50263										
KBTBD12	0	genome.wustl.edu	37	chr3	127649058	127649058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaagatcaatggagtgtgcGggcacccatgaagtactcta	11	10	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	127649058	127649058	G	A	SNP	KBTBD12	ENST00000405109	human	ensembl	69_37n	1	known	missense	c.1424	p.R475Q	0.980	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	177	0	0	145	83	36.4	-	-	-	A	127649058	G	A	127649058	3	1	569	1	0	0	0	0	1	0	0	0	8045	1116	39	1	1434	1	KBTBD12	3	127649058	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3998992	127649058	70373372	308	50264										
COL6A5	0	genome.wustl.edu	37	chr3	130114005	130114005	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caagaattgactttgcccttAaaaaagtgagcaatatgttt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	130114005	130114005	A	-	DEL	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	frame_shift_del	c.3265	p.V1091fs	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	220	0	0	181	90	32.14	-	-	-	-	130114005	A	-	130114005	7	5	569	1	0	1	0	1	0	0	0	0	3732	363	13	0	3291	0	COL6A5	3	130114005	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	2464947	130114005	67908425	309	50265										
COL6A5	0	genome.wustl.edu	37	chr3	130187729	130187729	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atattacatggatgtggcttTcctcatagatgcttcccaaa	7	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	130187729	130187729	T	C	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.6881	p.F2294S	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	225	0	0	153	92	37.4	-	-	-	C	130187729	T	C	130187729	3	2	569	1	0	0	0	0	1	0	0	0	3732	1783	62	5	7027	5	COL6A5	3	130187729	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	73724	130187729	67834701	310	50266										
DNAJC13	0	genome.wustl.edu	37	chr3	132235651	132235651	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgacagcagataaactgatAggtccaaaggtaggcacaaa	10	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	132235651	132235651	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.5664	p.I1888M	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	289	1	0.34	197	109	35.62	-	-	-	G	132235651	A	G	132235651	3	3	569	1	0	0	0	0	1	0	0	0	4667	410	15	5	5850	5	DNAJC13	3	132235651	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2047922	132235651	65786779	311	50267										
BFSP2	0	genome.wustl.edu	37	chr3	133167374	133167374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgaaaggcggcagaagaggAaattaactctctgtataaag	11	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	133167374	133167374	A	G	SNP	BFSP2	ENST00000302334	human	ensembl	69_37n	1	known	missense	c.614	p.E205G	1.000	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	BFSP2	HGNC	ENSG00000170819	181	0	0	120	65	35.14	-	-	-	G	133167374	A	G	133167374	3	3	569	1	0	0	0	0	1	0	0	0	1421	246	9	5	624	5	BFSP2	3	133167374	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	931723	133167374	64855056	312	50268										
TOPBP1	0	genome.wustl.edu	37	chr3	133374202	133374202	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcccatgtattgacctccaTgcttaactgtgagttgctga	9	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	133374202	133374202	T	C	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.674	p.H225R	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	303	0	0	245	145	37.18	-	-	-	C	133374202	T	C	133374202	3	2	569	1	0	0	0	0	1	0	0	0	16465	1464	51	5	3986	5	TOPBP1	3	133374202	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	206828	133374202	64648228	313	50269										
EPHB1	0	genome.wustl.edu	37	chr3	134644703	134644703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tactgcagagctgggctggaCggccaatcctgcgtccgggg	16	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	134644703	134644703	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.104	p.T35M	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	218	0	0	112	66	37.08	-	-	-	T	134644703	C	T	134644703	3	4	569	1	0	0	0	0	1	0	0	0	5211	536	19	1	110	1	EPHB1	3	134644703	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1270501	134644703	63377727	314	50270										
PCCB	0	genome.wustl.edu	37	chr3	136019953	136019953	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggtggacatcatacactcTgtaagtgccacatctgtttg	9	9	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	136019953	136019953	T	G	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	1	known	silent	c.966	p.S322	0.026	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	404	1	0.25	246	142	36.6	-	-	-	G	136019953	T	G	136019953	2	3	569	1	0	0	0	0	0	0	0	1	11578	1594	55	5		5	PCCB	3	136019953	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1375250	136019953	62002477	315	50271										
PLS1	0	genome.wustl.edu	37	chr3	142430808	142430808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaagatggttatgacggtgTttgcatgcttaatgggaaaa	12	4	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	142430808	142430808	T	C	SNP	PLS1	ENST00000337777	human	ensembl	69_37n	1	known	missense	c.1849	p.F617L	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS1	HGNC	ENSG00000120756	226	0	0	148	92	38.33	-	-	-	C	142430808	T	C	142430808	3	2	569	1	0	0	0	0	1	0	0	0	12181	1725	60	5	1907	5	PLS1	3	142430808	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6410855	142430808	55591622	316	50272										
TM4SF1	0	genome.wustl.edu	37	chr3	149089471	149089471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacattttcatgcaggttctTacctgttggtgagagcagca	11	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	149089471	149089471	T	C	SNP	TM4SF1	ENST00000472441	human	ensembl	69_37n	-1	putative	silent	c.330	p.V110	1.000	NULL	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908	139	0	0	111	52	31.9	-	-	-	C	149089471	T	C	149089471	2	2	569	1	0	0	0	0	0	0	0	1	16061	1769	61	5		5	TM4SF1	3	149089471	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6658663	149089471	48932959	317	50273										
RNF13	0	genome.wustl.edu	37	chr3	149678568	149678568	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccttggctaactaaaaccAaaaaaacctgtccagtgtgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	149678568	149678568	A	-	DEL	RNF13	ENST00000344229	human	ensembl	69_37n	1	known	frame_shift_del	c.823	p.T277fs	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF13	HGNC	ENSG00000082996	128	0	0	85	63	40.65	-	-	-	-	149678568	A	-	149678568	7	5	569	1	0	1	0	1	0	0	0	0	13523	131	5	0	857	0	RNF13	3	149678568	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	589097	149678568	48343862	318	50274										
P2RY1	0	genome.wustl.edu	37	chr3	152554350	152554350	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgaggagaaaatcgatttAcctggtaatcattgtactga	9	6	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	152554350	152554350	A	G	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	missense	c.779	p.Y260C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	214	0	0	149	98	39.52	-	-	-	G	152554350	A	G	152554350	3	3	569	1	0	0	0	0	1	0	0	0	11419	391	14	5	781	5	P2RY1	3	152554350	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2875782	152554350	45468080	319	50275										
MLF1	0	genome.wustl.edu	37	chr3	158315964	158315964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaccgccaaaggtttttcaGgcctcaactcaaactcgtcg	8	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	158315964	158315964	G	T	SNP	MLF1	ENST00000392822	human	ensembl	69_37n	1	known	missense	c.468	p.Q156H	1.000	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053	159	0	0	134	67	33.33	-	-	-	T	158315964	G	T	158315964	3	4	569	1	0	0	0	0	1	0	0	0	9685	991	35	4	389	4	MLF1	3	158315964	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5761614	158315964	39706466	320	50276										
SMC4	0	genome.wustl.edu	37	chr3	160146629	160146629	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtagaaatcaataatcataaActcaaggcccaacaagacaa	5	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	160146629	160146629	A	G	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	silent	c.2694	p.K898	1.000	pfam_RecF/RecN/SMC,superfamily_Prefoldin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	301	1	0.33	214	113	34.56	-	-	-	G	160146629	A	G	160146629	2	3	569	1	0	0	0	0	0	0	0	1	14874	40	2	5		5	SMC4	3	160146629	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1830665	160146629	37875801	321	50277										
SI	0	genome.wustl.edu	37	chr3	164739039	164739039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactcttccactgcttctccGtcgaatctggatgccaaaag	8	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	164739039	164739039	G	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.3232	p.R1078W	0.768	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	370	0	0	255	121	32.18	-	-	-	A	164739039	G	A	164739039	3	1	569	1	0	0	0	0	1	0	0	0	14386	1144	40	1	2339	1	SI	3	164739039	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4592410	164739039	33283391	322	50278										
MECOM	0	genome.wustl.edu	37	chr3	169381319	169381319	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctctctctctctctctcCctccctcctgtttctctcct	1	21	6	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	169381319	169381319	C	T	SNP	MECOM	ENST00000485957	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	MECOM	HGNC	ENSG00000085276	97	0	0	73	36	33.03	-	-	-	T	169381319	C	T	169381319	1	4	569	0	1	0	0	0	0	0	0	0	9493	638	22	4		4	MECOM	3	169381319	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4642280	169381319	28641111	323	50279										
TNIK	0	genome.wustl.edu	37	chr3	170846513	170846513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagactgtacctggggatcgActggtctgagcatggggggt	17	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	170846513	170846513	A	G	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.1763	p.V588A	0.553	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	153	1	0.65	111	65	36.93	-	-	-	G	170846513	A	G	170846513	3	3	569	1	0	0	0	0	1	0	0	0	16408	275	10	5	2391	5	TNIK	3	170846513	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1465194	170846513	27175917	324	50280										
FNDC3B	0	genome.wustl.edu	37	chr3	172115197	172115197	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgaacagtttgcagccatcAttgtgcttggctttgcaact	9	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	172115197	172115197	A	G	SNP	FNDC3B	ENST00000336824	human	ensembl	69_37n	1	known	missense	c.3547	p.I1183V	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420	318	0	0	240	151	38.62	-	-	-	G	172115197	A	G	172115197	3	3	569	1	0	0	0	0	1	0	0	0	6016	217	8	5	3645	5	FNDC3B	3	172115197	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1268684	172115197	25907233	325	50281										
CCDC50	0	genome.wustl.edu	37	chr3	191087808	191087808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgtgcttatgcagatagttActattatgaagatggaggta	11	5	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	191087808	191087808	A	G	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	missense	c.431	p.Y144C	0.983	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	152	1	0.65	92	67	42.14	-	-	-	G	191087808	A	G	191087808	3	3	569	1	0	0	0	0	1	0	0	0	2847	391	14	5	449	5	CCDC50	3	191087808	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	18972611	191087808	6934622	326	50282										
LRRC15	0	genome.wustl.edu	37	chr3	194080416	194080416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacattggctgggctgaaacAcacaggtacagtgtccgtcc	12	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	194080416	194080416	A	G	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.1375	p.C459R	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	326	1	0.3	165	111	39.93	-	-	-	G	194080416	A	G	194080416	3	3	569	1	0	0	0	0	1	0	0	0	9036	159	6	5	392	5	LRRC15	3	194080416	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2992608	194080416	3942014	327	50283										
FAM43A	0	genome.wustl.edu	37	chr3	194408622	194408624	+	In_Frame_Del	DEL	TTA	TTA	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaggctgagctgtcgcaacTtattagcgacctgggcgagc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	194408622	194408624	TTA	-	DEL	FAM43A	ENST00000329759	human	ensembl	69_37n	1	known	in_frame_del	c.1067_1069	p.I357in_frame_del	0.999:0.941:1.000	NULL	smart_PTyr_interaction_dom	-	no_errors	FAM43A	HGNC	ENSG00000185112	13	0	0	10	4	28.57	-	-	-	-	194408624	TTA	-	194408622	7	5	569	1	0	1	0	1	0	0	0	0	5608	1609	56	0	1069	0	FAM43A	3	194408622	In_Frame_Del	DEL	TTA	TCGA-BH-A18G-01A-11D-A12B-09	328206	194408622	3613808	328	50284										
MUC4	0	genome.wustl.edu	37	chr3	195512843	195512843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgacaagaagagaggtggCgtgacctgtggacactgagg	18	6	0	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	195512843	195512843	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.5608	p.A1870T	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	1504	2	0.13	922	197	17.43	-	-	-	T	195512843	C	T	195512843	3	4	569	1	0	0	0	0	1	0	0	0	10050	768	27	1		1	MUC4	3	195512843	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1104221	195512843	2509587	329	50285										
MFI2	0	genome.wustl.edu	37	chr3	196735739	196735739	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgcccacacacttgttgcgGccctgctcgtcccccacgca	8	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	3	196735739	196735739	G	C	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	silent	c.1623	p.G541	0.998	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	236	0	0	147	82	35.65	-	-	-	C	196735739	G	C	196735739	2	2	569	1	0	0	0	0	0	0	0	1	9593	1190	42	4		4	MFI2	3	196735739	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1222896	196735739	1286691	330	50286										
RNF212	0	genome.wustl.edu	37	chr4	1094724	1094724	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctagatacagatgtgttatAgctgttcagatggaattctg	11	5	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	1094724	1094724	A	G	SNP	RNF212	ENST00000505730	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RNF212	HGNC	ENSG00000178222	48	0	0	13	15	53.57	-	-	-	G	1094724	A	G	1094724	1	3	569	0	1	0	0	0	0	0	0	0	13562	435	15	5		5	RNF212	4	1094724	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09		1094724	190059552	331	50287										
WHSC1	0	genome.wustl.edu	37	chr4	1906107	1906107	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctataccaaacttaaaggTattgtgttctttgggttgtt	9	5	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	1906107	1906107	T	C	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	splice_site	c.760+2	e2+2	1.000	-	-	-	no_errors	WHSC1	HGNC	ENSG00000109685	301	0	0	195	122	38.49	-	-	-	C	1906107	T	C	1906107	5	2	569	1	0	0	0	0	0	0	1	0	17459	1652	57	5	768	5	WHSC1	4	1906107	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	811383	1906107	189248169	332	50288										
ZFYVE28	0	genome.wustl.edu	37	chr4	2306975	2306975	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgagctggggactggcaggcAatgggcggtgaaagcaaaga	18	6	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	2306975	2306975	A	G	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.1092	p.I364	0.488	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	30	0	0	22	17	43.59	-	-	-	G	2306975	A	G	2306975	2	3	569	1	0	0	0	0	0	0	0	1	17766	126	5	5		5	ZFYVE28	4	2306975	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	400868	2306975	188847301	333	50289										
MSX1	0	genome.wustl.edu	37	chr4	4864437	4864437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcggccctcagggcggctgaGccccccagcctgcaccctcc	11	21	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	4864437	4864437	G	A	SNP	MSX1	ENST00000382723	human	ensembl	69_37n	1	known	missense	c.479	p.S160N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132	9	0	0	6	4	36.36	-	-	-	A	4864437	G	A	4864437	3	1	569	1	0	0	0	0	1	0	0	0	9967	971	34	4	485	4	MSX1	4	4864437	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2557462	4864437	186289839	334	50290										
ABLIM2	0	genome.wustl.edu	37	chr4	7968787	7968787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcggtcaaactcctcgatgCtcatcccaaacacttcctgg	8	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	7968787	7968787	C	T	SNP	ABLIM2	ENST00000447017	human	ensembl	69_37n	-1	known	missense	c.1868	p.S623N	0.983	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	165	0	0	109	42	27.81	-	-	-	T	7968787	C	T	7968787	3	4	569	1	0	0	0	0	1	0	0	0	95	797	28	4	73	4	ABLIM2	4	7968787	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3104350	7968787	183185489	335	50291										
ABLIM2	0	genome.wustl.edu	37	chr4	7994611	7994611	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccgctggtccaagccattCtttccatgtcctgggagagg	11	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	7994611	7994611	C	A	SNP	ABLIM2	ENST00000447017	human	ensembl	69_37n	-1	known	missense	c.1662	p.K554N	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	214	0	0	120	68	36.17	-	-	-	A	7994611	C	A	7994611	3	1	569	1	0	0	0	0	1	0	0	0	95	912	32	2	295	2	ABLIM2	4	7994611	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	25824	7994611	183159665	336	50292										
CPZ	0	genome.wustl.edu	37	chr4	8609110	8609110	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccttcgacttctccaagcaCccccaggaggagaagatgtt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	8609110	8609110	C	-	DEL	CPZ	ENST00000360986	human	ensembl	69_37n	1	known	frame_shift_del	c.1185	p.Q397fs	0.997	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,pfscan_Frizzled_dom,prints_Peptidase_M14	-	no_errors	CPZ	HGNC	ENSG00000109625	163	0	0	96	54	35.76	-	-	-	-	8609110	C	-	8609110	7	5	569	1	0	1	0	1	0	0	0	0	3869	506	18	0	1211	0	CPZ	4	8609110	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	614499	8609110	182545166	337	50293										
CC2D2A	0	genome.wustl.edu	37	chr4	15482442	15482442	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgagtatgacagtccggagaGgcccacggagtaagtgcccc	14	11	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	15482442	15482442	G	T	SNP	CC2D2A	ENST00000413206	human	ensembl	69_37n	1	known	missense	c.238	p.G80C	0.480	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	CC2D2A	HGNC	ENSG00000048342	76	0	0	46	32	41.03	-	-	-	T	15482442	G	T	15482442	3	4	569	1	0	0	0	0	1	0	0	0	2753	1000	35	4	358	4	CC2D2A	4	15482442	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6873332	15482442	175671834	338	50294										
NSUN7	0	genome.wustl.edu	37	chr4	40778217	40778217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaagtatttgtgtgtggagTacaatcacaagctaaggatc	10	5	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	40778217	40778217	T	C	SNP	NSUN7	ENST00000381782	human	ensembl	69_37n	1	known	missense	c.977	p.V326A	0.962	NULL	pfam_Fmu/NOL1/Nop2p	-	no_errors	NSUN7	HGNC	ENSG00000179299	166	0	0	107	72	40	-	-	-	C	40778217	T	C	40778217	3	2	569	1	0	0	0	0	1	0	0	0	10756	1638	57	5	999	5	NSUN7	4	40778217	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	25295775	40778217	150376059	339	50295										
EXOC1	0	genome.wustl.edu	37	chr4	56730508	56730508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attgaatcagcgatatctccGgaagaaaattgattttgtca	8	6	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	56730508	56730508	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.371	p.R124Q	1.000	NULL	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	118	1	0.84	119	71	37.37	-	-	-	A	56730508	G	A	56730508	3	1	569	1	0	0	0	0	1	0	0	0	5337	1116	39	1	381	1	EXOC1	4	56730508	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	15952291	56730508	134423768	340	50296										
AASDH	0	genome.wustl.edu	37	chr4	57217581	57217581	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctcagacttcaagtttatgTagtttaaatatatcttgttt	5	5	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	57217581	57217581	T	C	SNP	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	missense	c.1619	p.Y540C	0.982	NULL	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	74	0	0	80	39	32.77	-	-	-	C	57217581	T	C	57217581	3	2	569	1	0	0	0	0	1	0	0	0	22	1638	57	5	1701	5	AASDH	4	57217581	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	487073	57217581	133936695	341	50297										
SPINK2	0	genome.wustl.edu	37	chr4	57686740	57686740	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagaccaaattgagggatcaGagaggctgtaagaagaaagc	13	6	1	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	57686740	57686740	G	T	SNP	SPINK2	ENST00000248701	human	ensembl	69_37n	-1	known	missense	c.61	p.L21M	0.000	NULL	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	-	no_errors	SPINK2	HGNC	ENSG00000128040	346	0	0	204	146	41.71	-	-	-	T	57686740	G	T	57686740	3	4	569	1	0	0	0	0	1	0	0	0	15151	933	33	2	205	2	SPINK2	4	57686740	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	469159	57686740	133467536	342	50298										
UGT2B7	0	genome.wustl.edu	37	chr4	69962480	69962480	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaaatttatcccacatcttTaactaaaactgagttggaga	6	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	69962480	69962480	T	C	SNP	UGT2B7	ENST00000305231	human	ensembl	69_37n	1	known	missense	c.242	p.L81S	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234	174	0	0	109	72	39.78	-	-	-	C	69962480	T	C	69962480	3	2	569	1	0	0	0	0	1	0	0	0	17059	1764	61	5	244	5	UGT2B7	4	69962480	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	12275740	69962480	121191796	343	50299										
CSN3	0	genome.wustl.edu	37	chr4	71110584	71110584	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccctggcattaaccctgccTtttttggtaagttaatttca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	71110584	71110584	T	-	DEL	CSN3	ENST00000304954	human	ensembl	69_37n	1	known	frame_shift_del	c.48	p.L18fs	0.948	pfam_Casein_kappa,pirsf_Casein_kappa	pfam_Casein_kappa,pirsf_Casein_kappa	-	no_errors	CSN3	HGNC	ENSG00000171209	145	0	0	115	67	36.22	-	-	-	-	71110584	T	-	71110584	7	5	569	1	0	1	0	1	0	0	0	0	3981	1596	56	0	50	0	CSN3	4	71110584	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	1148104	71110584	120043692	344	50300										
SMR3A	0	genome.wustl.edu	37	chr4	71232426	71232426	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccactggctcctcctcctccAccatgttttccttttggaac	5	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	71232426	71232426	A	T	SNP	SMR3A	ENST00000226460	human	ensembl	69_37n	1	known	silent	c.120	p.P40	0.003	NULL	NULL	-	no_errors	SMR3A	HGNC	ENSG00000109208	259	0	0	195	106	35.1	-	-	-	T	71232426	A	T	71232426	2	4	569	1	0	0	0	0	0	0	0	1	14900	146	6	5		5	SMR3A	4	71232426	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	121842	71232426	119921850	345	50301										
IL8	0	genome.wustl.edu	37	chr4	74608180	74608180	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttagggctgagaattcatAaaaaaattcattctctgtgg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	74608180	74608180	A	-	DEL	IL8	ENST00000307407	human	ensembl	69_37n	1	known	frame_shift_del	c.299	p.*100fs	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	IL8	HGNC	ENSG00000169429	81	0	0	63	37	36.27	-	-	-	-	74608180	A	-	74608180	7	5	569	1	0	1	0	1	0	0	0	0	7760	369	13	0	313	0	IL8	4	74608180	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	3375754	74608180	116546096	346	50302										
NUP54	0	genome.wustl.edu	37	chr4	77053844	77053844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaagtaccatttggcgaacGctcaacaacataaataacaa	6	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	77053844	77053844	G	A	SNP	NUP54	ENST00000264883	human	ensembl	69_37n	-1	known	missense	c.739	p.R247C	1.000	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750	287	1	0.35	202	157	43.73	-	-	-	A	77053844	G	A	77053844	3	1	569	1	0	0	0	0	1	0	0	0	10840	1087	38	1	812	1	NUP54	4	77053844	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2445664	77053844	114100432	347	50303										
CCDC158	0	genome.wustl.edu	37	chr4	77247091	77247091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaaccttcaactgaactagTtaggagtgagtgcactggag	12	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	77247091	77247091	T	C	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	missense	c.3076	p.T1026A	0.411	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	294	0	0	233	132	36.16	-	-	-	C	77247091	T	C	77247091	3	2	569	1	0	0	0	0	1	0	0	0	2816	1725	60	5	277	5	CCDC158	4	77247091	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	193247	77247091	113907185	348	50304										
FRAS1	0	genome.wustl.edu	37	chr4	79238583	79238583	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctcactgtacagcctgcagCccccccaaggctctgcgtca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	79238583	79238583	C	-	DEL	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	frame_shift_del	c.1881	p.K630fs	0.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	269	1	0.37	179	112	37.97	-	-	-	-	79238583	C	-	79238583	7	5	569	1	0	1	0	1	0	0	0	0	6090	738	26	0	1947	0	FRAS1	4	79238583	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1991492	79238583	111915693	349	50305										
PAQR3	0	genome.wustl.edu	37	chr4	79847790	79847790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagcctttgccattgctgcGtgaggtaattgggatgaatc	14	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	79847790	79847790	G	A	SNP	PAQR3	ENST00000511594	human	ensembl	69_37n	-1	known	missense	c.587	p.T196M	0.999	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291	238	0	0	168	86	33.86	-	-	-	A	79847790	G	A	79847790	3	1	569	1	0	0	0	0	1	0	0	0	11509	1145	40	1	360	1	PAQR3	4	79847790	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	609207	79847790	111306486	350	50306										
PAQR3	0	genome.wustl.edu	37	chr4	79860369	79860369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgcgcgctcttcagcagctTctgatgcatcgttcccggcc	10	15	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	79860369	79860369	T	C	SNP	PAQR3	ENST00000511594	human	ensembl	69_37n	-1	known	missense	c.10	p.K4E	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291	41	0	0	40	13	24.53	-	-	-	C	79860369	T	C	79860369	3	2	569	1	0	0	0	0	1	0	0	0	11509	1792	62	5	949	5	PAQR3	4	79860369	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	12579	79860369	111293907	351	50307										
GK2	0	genome.wustl.edu	37	chr4	80329336	80329336	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caccaacggccccacagctgCtgtctttggggctgccatga	11	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	80329336	80329336	C	T	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	missense	c.19	p.A7T	0.000	NULL	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	89	0	0	52	30	36.59	-	-	-	T	80329336	C	T	80329336	3	4	569	1	0	0	0	0	1	0	0	0	6473	797	28	4	1646	4	GK2	4	80329336	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	468967	80329336	110824940	352	50308										
HNRNPD	0	genome.wustl.edu	37	chr4	83276431	83276431	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaactactattgtaaatgacAaaaaaaaactatttttagaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	83276431	83276431	A	-	DEL	HNRNPD	ENST00000508119	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HNRNPD	HGNC	ENSG00000138668	201	0	0	138	95	40.25	-	-	-	-	83276431	A	-	83276431	6	5	569	0	1	1	0	1	0	0	0	0	7315	145	5	0		0	HNRNPD	4	83276431	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	2947095	83276431	107877845	353	50309										
SEC31A	0	genome.wustl.edu	37	chr4	83745800	83745800	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggaataggtttcttggtaaTtttttttgttggcaaagact							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	83745800	83745800	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	frame_shift_del	c.3358	p.I1120fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	490	2	0.41	378	184	32.62	-	-	-	-	83745800	T	-	83745800	7	5	569	1	0	1	0	1	0	0	0	0	14086	1493	52	0	355	0	SEC31A	4	83745800	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	469369	83745800	107408476	354	50310										
ARHGAP24	0	genome.wustl.edu	37	chr4	86852113	86852113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccggaattctggggggtgCccggctggtgccttagcctc	16	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	86852113	86852113	C	T	SNP	ARHGAP24	ENST00000264343	human	ensembl	69_37n	1	known	silent	c.30	p.C10	0.933	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	125	0	0	112	76	40.43	-	-	-	T	86852113	C	T	86852113	2	4	569	1	0	0	0	0	0	0	0	1	875	747	26	4		4	ARHGAP24	4	86852113	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3106313	86852113	104302163	355	50311										
MMRN1	0	genome.wustl.edu	37	chr4	90844346	90844346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagcaaagtttgatacacaCcaaccaggctgaaagtcata	7	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	90844346	90844346	C	T	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.878	p.T293I	0.962	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	247	0	0	210	110	34.38	-	-	-	T	90844346	C	T	90844346	3	4	569	1	0	0	0	0	1	0	0	0	9742	507	18	4	892	4	MMRN1	4	90844346	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3992233	90844346	100309930	356	50312										
SMARCAD1	0	genome.wustl.edu	37	chr4	95173838	95173838	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caagaagtcaaaattaccctAaaaatgcaactaaaacaaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	95173838	95173838	A	-	DEL	SMARCAD1	ENST00000359052	human	ensembl	69_37n	1	known	frame_shift_del	c.961	p.N322fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104	93	0	0	55	33	36.67	-	-	-	-	95173838	A	-	95173838	7	5	569	1	0	1	0	1	0	0	0	0	14861	363	13	0	991	0	SMARCAD1	4	95173838	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	4329492	95173838	95980438	357	50313										
SMARCAD1	0	genome.wustl.edu	37	chr4	95173909	95173910	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggctttaacaagaaacgtINSaaaaaaaatgtttttaatcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	95173909	95173910	-	A	INS	SMARCAD1	ENST00000359052	human	ensembl	69_37n	1	known	frame_shift_ins	c.1032_1033	p.N346fs	0.996:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104	132	1	0.75	101	41	28.87	-	-	-	A	95173910	-	A	95173909	7	5	569	1	0	1	1	0	0	0	0	0	14861	1625	57	0	1062	0	SMARCAD1	4	95173909	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	71	95173909	95980367	358	50314										
ADH1A	0	genome.wustl.edu	37	chr4	100200633	100200633	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatttattttttcaaaaggTaaaacatgggttattaatgc	6	4	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	100200633	100200633	T	C	SNP	ADH1A	ENST00000209668	human	ensembl	69_37n	-1	known	silent	c.1053	p.L351	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758	323	1	0.31	209	126	37.17	-	-	-	C	100200633	T	C	100200633	2	2	569	1	0	0	0	0	0	0	0	1	307	1635	57	5		5	ADH1A	4	100200633	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5026724	100200633	90953643	359	50315										
DNAJB14	0	genome.wustl.edu	37	chr4	100824995	100824995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tattcatttttgaagtccttGttgacataataaacaacacc	4	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	100824995	100824995	G	A	SNP	DNAJB14	ENST00000442697	human	ensembl	69_37n	-1	known	silent	c.903	p.N301	1.000	pfam_DUF1977_DnaJ-like	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB14	HGNC	ENSG00000164031	302	0	0	258	107	29.16	-	-	-	A	100824995	G	A	100824995	2	1	569	1	0	0	0	0	0	0	0	1	4654	1368	48	4		4	DNAJB14	4	100824995	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	624362	100824995	90329281	360	50316										
DDIT4L	0	genome.wustl.edu	37	chr4	101108933	101108933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agagttctcctgaaaccagaGgagaagcgacctctactaaa	9	10	2	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	101108933	101108933	G	A	SNP	DDIT4L	ENST00000273990	human	ensembl	69_37n	-1	known	silent	c.483	p.S161	0.009	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358	139	0	0	109	54	33.13	-	-	-	A	101108933	G	A	101108933	2	1	569	1	0	0	0	0	0	0	0	1	4363	987	35	4		4	DDIT4L	4	101108933	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	283938	101108933	90045343	361	50317										
TET2	0	genome.wustl.edu	37	chr4	106196445	106196445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agatatctatggaagcaccaGccctatgaacttctattcca	6	11	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	106196445	106196445	G	A	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.4778	p.S1593N	0.106	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	270	0	0	174	149	46.13	-	-	-	A	106196445	G	A	106196445	3	1	569	1	0	0	0	0	1	0	0	0	15865	971	34	4	4901	4	TET2	4	106196445	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5087512	106196445	84957831	362	50318										
TBCK	0	genome.wustl.edu	37	chr4	107092364	107092364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagcatgctgtctgtaagtaGcacttttaggagtccaacaa	10	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	107092364	107092364	G	A	SNP	TBCK	ENST00000273980	human	ensembl	69_37n	-1	known	missense	c.2123	p.A708V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_cat_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348	319	0	0	240	172	41.75	-	-	-	A	107092364	G	A	107092364	3	1	569	1	0	0	0	0	1	0	0	0	15731	971	34	4	574	4	TBCK	4	107092364	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	895919	107092364	84061912	363	50319										
C4orf21	0	genome.wustl.edu	37	chr4	113539094	113539094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcttctgaaaatagattacTgttttcagcaatctggtttt	6	6	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	113539094	113539094	T	C	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.2104	p.S702G	0.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	112	0	0	66	42	38.89	-	-	-	C	113539094	T	C	113539094	3	2	569	1	0	0	0	0	1	0	0	0	2275	1580	55	5	4302	5	C4orf21	4	113539094	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6446730	113539094	77615182	364	50320										
LARP7	0	genome.wustl.edu	37	chr4	113578483	113578483	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agattttctgaatatgattgAaaaaaaaaacagttcacctc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	113578483	113578483	A	-	DEL	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	frame_shift_del	c.1749	p.*583fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	109	1	0.9	91	42	31.34	-	-	-	-	113578483	A	-	113578483	7	5	569	1	0	1	0	1	0	0	0	0	8687	259	9	0	1795	0	LARP7	4	113578483	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	39389	113578483	77575793	365	50321										
ANK2	0	genome.wustl.edu	37	chr4	114223960	114223960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaactaaatgtacctgagaCgatgactgaggttcttgatg	10	7	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	114223960	114223960	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2513	p.T838M	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	294	0	0	221	126	36.31	-	-	-	T	114223960	C	T	114223960	3	4	569	1	0	0	0	0	1	0	0	0	621	536	19	1	2628	1	ANK2	4	114223960	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	645477	114223960	76930316	366	50322										
CAMK2D	0	genome.wustl.edu	37	chr4	114680565	114680566	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttctcaccactgagaatgINScccccctggaaaccaataat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	114680565	114680566	-	C	INS	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	frame_shift_ins	c.71_70	p.A24fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	100	0	0	97	38	28.15	-	-	-	C	114680566	-	C	114680565	7	5	569	1	0	1	1	0	0	0	0	0	2626	1319	46	0	1591	0	CAMK2D	4	114680565	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	456605	114680565	76473711	367	50323										
PDE5A	0	genome.wustl.edu	37	chr4	120422366	120422366	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcatctatgaacccaacttGcatacttgggattttgtttt	8	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	120422366	120422366	G	A	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	nonsense	c.2449	p.Q817*	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	479	1	0.21	296	164	35.57	-	-	-	A	120422366	G	A	120422366	4	1	569	1	0	0	0	0	0	1	0	0	11717	1328	46	4	186	4	PDE5A	4	120422366	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5741801	120422366	70731910	368	50324										
PDE5A	0	genome.wustl.edu	37	chr4	120460122	120460122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaggataattaccgctaacGactgtagctctcttgtttct	8	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	120460122	120460122	G	A	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	missense	c.1625	p.S542L	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	114	0	0	78	44	36.07	-	-	-	A	120460122	G	A	120460122	3	1	569	1	0	0	0	0	1	0	0	0	11717	1059	37	1	1046	1	PDE5A	4	120460122	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	37756	120460122	70694154	369	50325										
MAML3	0	genome.wustl.edu	37	chr4	140640638	140640638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacgtcctgaggggcattccGctcataggcttggctctggc	13	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	140640638	140640638	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.3256	p.R1086W	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	145	0	0	86	68	44.16	-	-	-	A	140640638	G	A	140640638	3	1	569	1	0	0	0	0	1	0	0	0	9278	1086	38	1	164	1	MAML3	4	140640638	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	20180516	140640638	50513638	370	50326										
KIAA0922	0	genome.wustl.edu	37	chr4	154542925	154542925	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatgtaagaagctggtgtatAcaggaaagcactagggaggt	14	4	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	154542925	154542925	A	G	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.3783	p.I1261M	0.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	519	0	0	342	195	36.25	-	-	-	G	154542925	A	G	154542925	3	3	569	1	0	0	0	0	1	0	0	0	8253	381	14	5	3893	5	KIAA0922	4	154542925	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	13902287	154542925	36611351	371	50327										
DCHS2	0	genome.wustl.edu	37	chr4	155219190	155219190	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggattttgctgaaattgaatTtctcctgtgtatttatcaat	7	5	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	155219190	155219190	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.4911	p.E1637	0.460	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	129	0	0	89	48	35.04	-	-	-	C	155219190	T	C	155219190	2	2	569	1	0	0	0	0	0	0	0	1	4319	1838	64	5		5	DCHS2	4	155219190	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	676265	155219190	35935086	372	50328										
DCHS2	0	genome.wustl.edu	37	chr4	155237076	155237076	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgtgccatcatccagtgccAgaacagtcagaatatgctga	10	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	155237076	155237076	A	G	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3719	p.L1240P	0.375	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	523	0	0	344	216	38.5	-	-	-	G	155237076	A	G	155237076	3	3	569	1	0	0	0	0	1	0	0	0	4319	188	7	5	5075	5	DCHS2	4	155237076	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	17886	155237076	35917200	373	50329										
DCHS2	0	genome.wustl.edu	37	chr4	155410968	155410968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctcagcggcggggaccccgCgtccgtggccaccagtagta	15	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	155410968	155410968	C	T	SNP	DCHS2	ENST00000339452	human	ensembl	69_37n	-1	known	missense	c.1540	p.A514T	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	77	0	0	46	26	35.62	-	-	-	T	155410968	C	T	155410968	3	4	569	1	0	0	0	0	1	0	0	0	4319	768	27	1	9544	1	DCHS2	4	155410968	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	173892	155410968	35743308	374	50330										
FGG	0	genome.wustl.edu	37	chr4	155533684	155533684	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgtgaagagcacacttacTgctacacatgttgaagagag	10	7	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	155533684	155533684	T	C	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	silent	c.78	p.A26	0.994	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	196	0	0	139	73	34.43	-	-	-	C	155533684	T	C	155533684	2	2	569	1	0	0	0	0	0	0	0	1	5916	1594	55	5		5	FGG	4	155533684	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	122716	155533684	35620592	375	50331										
RAPGEF2	0	genome.wustl.edu	37	chr4	160252651	160252651	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaggagatcctgcaatgacTcgatttttagaagaatttga	10	5	0	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	160252651	160252651	T	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	silent	c.1053	p.T351	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	174	0	0	125	51	28.98	-	-	-	A	160252651	T	A	160252651	2	1	569	1	0	0	0	0	0	0	0	1	13127	1538	54	5		5	RAPGEF2	4	160252651	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4718967	160252651	30901625	376	50332										
FSTL5	0	genome.wustl.edu	37	chr4	162380399	162380399	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtcttctccaaggtaccccAgcttagcacccagacctgat	7	15	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	162380399	162380399	A	G	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.1681	p.W561R	1.000	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	346	0	0	239	142	37.27	-	-	-	G	162380399	A	G	162380399	3	3	569	1	0	0	0	0	1	0	0	0	6129	188	7	5	874	5	FSTL5	4	162380399	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2127748	162380399	28773877	377	50333										
IRF2	0	genome.wustl.edu	37	chr4	185309973	185309973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttgatgacgctggcccggGtctcccggtctggccgactg	14	14	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	4	185309973	185309973	G	A	SNP	IRF2	ENST00000393593	human	ensembl	69_37n	-1	known	missense	c.989	p.T330I	0.925	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310	141	0	0	93	61	39.61	-	-	-	A	185309973	G	A	185309973	3	1	569	1	0	0	0	0	1	0	0	0	7882	1261	44	4	64	4	IRF2	4	185309973	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	22929574	185309973	5844303	378	50334										
PLEKHG4B	0	genome.wustl.edu	37	chr5	169664	169664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctccgggagctggagcgctGccagcactgccccttggccg	14	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	169664	169664	G	A	SNP	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	1	known	missense	c.2618	p.C873Y	0.999	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	84	0	0	76	9	10.59	-	-	-	A	169664	G	A	169664	3	1	569	1	0	0	0	0	1	0	0	0	12146	1319	46	4	2664	4	PLEKHG4B	5	169664	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09		169664	180745596	379	50335										
PDCD6	0	genome.wustl.edu	37	chr5	306729	306729	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtctcagccatgtttgaccGtgagaacaaggccggcgtga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	306729	306729	G	-	DEL	PDCD6	ENST00000264933	human	ensembl	69_37n	1	known	frame_shift_del	c.221	p.R74fs	0.997	smart_EF_hand_Ca-bd	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	PDCD6	HGNC	ENSG00000249915	63	0	0	52	23	29.87	-	-	-	-	306729	G	-	306729	7	5	569	1	0	1	0	1	0	0	0	0	11696	1145	40	0	235	0	PDCD6	5	306729	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	137065	306729	180608531	380	50336										
AHRR	0	genome.wustl.edu	37	chr5	353994	353994	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctgtcctgcgcctcagtgTcagttacctccgggtgaaga	11	12	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	353994	353994	T	C	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	missense	c.224	p.V75A	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	173	0	0	125	73	36.87	-	-	-	C	353994	T	C	353994	3	2	569	1	0	0	0	0	1	0	0	0	417	1667	58	5	234	5	AHRR	5	353994	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	47265	353994	180561266	381	50337										
TRIP13	0	genome.wustl.edu	37	chr5	896907	896907	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaatcactgggttctacctgCaggtatggggtgtgatggga	15	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	896907	896907	C	T	SNP	TRIP13	ENST00000513435	human	ensembl	69_37n	1	putative	nonsense	c.373	p.Q125*	1.000	NULL	pfam_ATPase_AAA_core	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIP13	HGNC	ENSG00000071539	302	0	0	209	110	34.48	-	-	-	T	896907	C	T	896907	4	4	569	1	0	0	0	0	0	1	0	0	16653	710	25	4	396	4	TRIP13	5	896907	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	542913	896907	180018353	382	50338										
FAM173B	0	genome.wustl.edu	37	chr5	10239183	10239183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttagcagaactcacaatgCgtccgtccccactaccgatg	7	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	10239183	10239183	C	T	SNP	FAM173B	ENST00000511437	human	ensembl	69_37n	-1	known	missense	c.302	p.R101H	0.955	NULL	NULL	-	no_errors	FAM173B	HGNC	ENSG00000150756	172	0	0	118	83	41.29	-	-	-	T	10239183	C	T	10239183	3	4	569	1	0	0	0	0	1	0	0	0	5534	768	27	1	415	1	FAM173B	5	10239183	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	9342276	10239183	170676077	383	50339										
CCT5	0	genome.wustl.edu	37	chr5	10261709	10261709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggagggcggatcgtccccaGgttctcagagctcacagccg	14	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	10261709	10261709	G	T	SNP	CCT5	ENST00000280326	human	ensembl	69_37n	1	known	missense	c.1031	p.R344M	0.979	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_epsi	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_epsi	-	no_errors	CCT5	HGNC	ENSG00000150753	141	0	0	109	76	41.08	-	-	-	T	10261709	G	T	10261709	3	4	569	1	0	0	0	0	1	0	0	0	2985	1000	35	4	1061	4	CCT5	5	10261709	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	22526	10261709	170653551	384	50340										
MARCH6	0	genome.wustl.edu	37	chr5	10430051	10430052	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccatcggcggatttatccaINStttttactgatggtcgtggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	10430051	10430052	-	T	INS	MARCH6	ENST00000274140	human	ensembl	69_37n	1	known	frame_shift_ins	c.2553_2554	p.L852fs	0.388:0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495	538	0	0	449	169	27.35	-	-	-	T	10430052	-	T	10430051	7	5	569	1	0	1	1	0	0	0	0	0	9376	204	8	0	2651	0	MARCH6	5	10430051	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	168342	10430051	170485209	385	50341										
DNAH5	0	genome.wustl.edu	37	chr5	13714559	13714559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcttctccagcatatcatcAgccagccgggccaccaccgc	8	18	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	13714559	13714559	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.13080	p.A4360	0.972	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	64	0	0	40	26	39.39	-	-	-	G	13714559	A	G	13714559	2	3	569	1	0	0	0	0	0	0	0	1	4640	175	7	5		5	DNAH5	5	13714559	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3284508	13714559	167200701	386	50342										
DNAH5	0	genome.wustl.edu	37	chr5	13735431	13735431	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taatcgggctcttgacagacCtggtgaatagaatatttaaa	9	6	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	13735431	13735431	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	splice_site	c.11571-1	e68-1	1.000	-	-	-	no_errors	DNAH5	HGNC	ENSG00000039139	133	0	0	117	56	32.37	-	-	-	T	13735431	C	T	13735431	5	4	569	1	0	0	0	0	0	0	1	0	4640	695	24	4	2352	4	DNAH5	5	13735431	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	20872	13735431	167179829	387	50343										
DNAH5	0	genome.wustl.edu	37	chr5	13871682	13871682	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatgaaccaacctgtgtacaGagcaatggaacccacacaga	8	11	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	13871682	13871682	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.3589	p.L1197M	0.619	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	228	0	0	214	30	12.3	-	-	-	T	13871682	G	T	13871682	3	4	569	1	0	0	0	0	1	0	0	0	4640	933	33	2	10513	2	DNAH5	5	13871682	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	136251	13871682	167043578	388	50344										
FBXL7	0	genome.wustl.edu	37	chr5	15936680	15936680	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactgcttcgtgctggaggaCgaaggcctgcacaccatcgc	13	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	15936680	15936680	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	69_37n	1	known	silent	c.861	p.D287	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL7	HGNC	ENSG00000183580	99	1	1	50	42	45.16	-	-	-	T	15936680	C	T	15936680	2	4	569	1	0	0	0	0	0	0	0	1	5770	535	19	1		1	FBXL7	5	15936680	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2064998	15936680	164978580	389	50345										
ZNF622	0	genome.wustl.edu	37	chr5	16453127	16453127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taaagatcaatgtacctgtgCtgccagtccatcccagggct	9	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	16453127	16453127	C	T	SNP	ZNF622	ENST00000308683	human	ensembl	69_37n	-1	known	missense	c.1301	p.S434N	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545	104	1	0.95	78	56	41.79	-	-	-	T	16453127	C	T	16453127	3	4	569	1	0	0	0	0	1	0	0	0	18142	797	28	4	140	4	ZNF622	5	16453127	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	516447	16453127	164462133	390	50346										
MYO10	0	genome.wustl.edu	37	chr5	16694613	16694614	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcgtggaggagccccccccINSttttttgtggagccagcctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	16694613	16694614	-	T	INS	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3667_3666	p.G1222fs	1.000:0.662	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	150	0	0	135	41	23.3	-	-	-	T	16694614	-	T	16694613	7	5	569	1	0	1	1	0	0	0	0	0	10134	681	24	0	2569	0	MYO10	5	16694613	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	241486	16694613	164220647	391	50347										
CDH10	0	genome.wustl.edu	37	chr5	24488214	24488214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttcttttgacaagatcagaGgctctttttttcgctgtctt	7	9	4	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	24488214	24488214	G	T	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	missense	c.1925	p.P642H	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	64	0	0	22	38	63.33	-	-	-	T	24488214	G	T	24488214	3	4	569	1	0	0	0	0	1	0	0	0	3125	1000	35	4	445	4	CDH10	5	24488214	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	7793601	24488214	156427046	392	50348										
SLC1A3	0	genome.wustl.edu	37	chr5	36677049	36677049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccatccaggccaacgaaaCgcttgtgggtgctgtgataa	12	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	36677049	36677049	C	T	SNP	SLC1A3	ENST00000265113	human	ensembl	69_37n	1	known	missense	c.623	p.T208M	0.995	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	259	0	0	136	115	45.82	-	-	-	T	36677049	C	T	36677049	3	4	569	1	0	0	0	0	1	0	0	0	14522	536	19	1	658	1	SLC1A3	5	36677049	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	12188835	36677049	144238211	393	50349										
NIPBL	0	genome.wustl.edu	37	chr5	36976367	36976367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaaccccagacttctgtggTacagaatcaacaacagatat	6	11	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	36976367	36976367	T	C	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.1358	p.V453A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	186	0	0	146	99	40.24	-	-	-	C	36976367	T	C	36976367	3	2	569	1	0	0	0	0	1	0	0	0	10500	1638	57	5	1388	5	NIPBL	5	36976367	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	299318	36976367	143938893	394	50350										
C5orf42	0	genome.wustl.edu	37	chr5	37244502	37244502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttttataaaaacagcattcActacagcttctttatcttcg	3	9	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	37244502	37244502	A	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.545	p.V182A	0.873	superfamily_Quino_amine_DH_bsu	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	96	0	0	73	37	33.64	-	-	-	G	37244502	A	G	37244502	3	3	569	1	0	0	0	0	1	0	0	0	2322	159	6	5	9240	5	C5orf42	5	37244502	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	268135	37244502	143670758	395	50351										
NUP155	0	genome.wustl.edu	37	chr5	37333695	37333695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctactttcaattcatctatcGcagaaagagcccaggaatga	7	10	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	37333695	37333695	G	A	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.1388	p.A463V	1.000	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	170	1	0.58	138	63	31.34	-	-	-	A	37333695	G	A	37333695	3	1	569	1	0	0	0	0	1	0	0	0	10829	1087	38	1	2879	1	NUP155	5	37333695	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	89193	37333695	143581565	396	50352										
HEATR7B2	0	genome.wustl.edu	37	chr5	41012725	41012725	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgctgcttcaggacagtgAtcatccatatgccacaggcc	9	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	41012725	41012725	A	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.3095	p.I1032N	0.408	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	250	1	0.4	179	71	28.4	-	-	-	T	41012725	A	T	41012725	3	4	569	1	0	0	0	0	1	0	0	0	7086	333	12	5	1714	5	HEATR7B2	5	41012725	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3679030	41012725	139902535	397	50353										
GPX8	0	genome.wustl.edu	37	chr5	54460122	54460122	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cattttaaacatttttttttTggagacagtgtctcactctg	6	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	54460122	54460122	T	G	SNP	GPX8	ENST00000506123	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	GPX8	HGNC	ENSG00000164294	28	0	0	12	11	47.83	-	-	-	G	54460122	T	G	54460122	1	3	569	0	1	0	0	0	0	0	0	0	6797	1827	63	5		5	GPX8	5	54460122	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	13447397	54460122	126455138	398	50354										
MAP3K1	0	genome.wustl.edu	37	chr5	56160724	56160724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcctgattggaggagacaGcccagacaataaataccggg	11	9	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	56160724	56160724	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.998	p.S333I	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	233	0	0	189	98	33.91	-	-	-	T	56160724	G	T	56160724	3	4	569	1	0	0	0	0	1	0	0	0	9314	971	34	4	1012	4	MAP3K1	5	56160724	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1700602	56160724	124754536	399	50355										
KIF2A	0	genome.wustl.edu	37	chr5	61653537	61653537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gattgatgaacataggatatGtgtgtgtgtaagaaaacgac	12	3	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	61653537	61653537	G	A	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.674	p.C225Y	1.000	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	218	1	0.46	133	80	37.56	-	-	-	A	61653537	G	A	61653537	3	1	569	1	0	0	0	0	1	0	0	0	8349	1377	48	4	704	4	KIF2A	5	61653537	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5492813	61653537	119261723	400	50356										
POLK	0	genome.wustl.edu	37	chr5	74865213	74865213	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagccgaaatttgagcaatAccatagtgcacattgacatg	8	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	74865213	74865213	A	G	SNP	POLK	ENST00000241436	human	ensembl	69_37n	1	known	missense	c.304	p.T102A	1.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008	273	0	0	225	123	35.34	-	-	-	G	74865213	A	G	74865213	3	3	569	1	0	0	0	0	1	0	0	0	12278	391	14	5	314	5	POLK	5	74865213	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	13211676	74865213	106050047	401	50357										
GPR98	0	genome.wustl.edu	37	chr5	89938470	89938470	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagggttaacgtggaaaaccAagtgctgaaatctggatata	11	5	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	89938470	89938470	A	G	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.2258	p.Q753R	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	156	1	0.64	145	77	34.53	-	-	-	G	89938470	A	G	89938470	3	3	569	1	0	0	0	0	1	0	0	0	6772	130	5	5	2304	5	GPR98	5	89938470	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	15073257	89938470	90976790	402	50358										
GPR98	0	genome.wustl.edu	37	chr5	89943554	89943554	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccggaaacagatgagcccTtttatataatcctcttgaat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	89943554	89943554	T	-	DEL	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	frame_shift_del	c.3262	p.Y1089fs	0.999	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	304	0	0	186	89	32.13	-	-	-	-	89943554	T	-	89943554	7	5	569	1	0	1	0	1	0	0	0	0	6772	1609	56	0	3328	0	GPR98	5	89943554	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	5084	89943554	90971706	403	50359										
GPR98	0	genome.wustl.edu	37	chr5	90024500	90024500	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttcaggtcttcaggtggaaTggaggaagcttcgtgttgca	14	7	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	90024500	90024500	T	G	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.10176	p.N3392K	0.948	pfscan_EAR	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	306	0	0	192	104	35.14	-	-	-	G	90024500	T	G	90024500	3	3	569	1	0	0	0	0	1	0	0	0	6772	1461	51	5	10370	5	GPR98	5	90024500	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	80946	90024500	90890760	404	50360										
GPR150	0	genome.wustl.edu	37	chr5	94957230	94957230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggacgagggcggcttgcgCccaccccctccgcgccccag	13	20	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	94957230	94957230	C	T	SNP	GPR150	ENST00000380007	human	ensembl	69_37n	1	known	silent	c.1251	p.R417	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR150	HGNC	ENSG00000178015	27	0	0	11	14	53.85	-	-	-	T	94957230	C	T	94957230	2	4	569	1	0	0	0	0	0	0	0	1	6706	726	26	4		4	GPR150	5	94957230	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4932730	94957230	85958030	405	50361										
PPIP5K2	0	genome.wustl.edu	37	chr5	102537309	102537309	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaacagaaacgcatgaacacAaaaaaaacactgggaaaaag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	102537309	102537309	A	-	DEL	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	frame_shift_del	c.3706	p.N1238fs	0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	282	0	0	236	126	34.52	-	-	-	-	102537309	A	-	102537309	7	5	569	1	0	1	0	1	0	0	0	0	12410	131	5	0	3757	0	PPIP5K2	5	102537309	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	7580079	102537309	78377951	406	50362										
APC	0	genome.wustl.edu	37	chr5	112176648	112176648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accacaaaatactgaatataGgacacgtgtaagaaaaaatg	7	6	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	112176648	112176648	G	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.5357	p.R1786M	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	97	0	0	40	38	48.72	-	-	-	T	112176648	G	T	112176648	3	4	569	1	0	0	0	0	1	0	0	0	764	1000	35	4	5415	4	APC	5	112176648	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9639339	112176648	68738612	407	50363										
FEM1C	0	genome.wustl.edu	37	chr5	114860367	114860367	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttacaaacagggtaccgccCtacacatgtagtattcttgt	7	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	114860367	114860367	C	A	SNP	FEM1C	ENST00000274457	human	ensembl	69_37n	-1	known	missense	c.1492	p.G498W	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780	289	0	0	201	131	39.46	-	-	-	A	114860367	C	A	114860367	3	1	569	1	0	0	0	0	1	0	0	0	5857	681	24	4	365	4	FEM1C	5	114860367	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2683719	114860367	66054893	408	50364										
SLC12A2	0	genome.wustl.edu	37	chr5	127507374	127507374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttagtgatgcttttgacatAcaatatggagtagtggttat	10	4	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	127507374	127507374	A	G	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	1	known	missense	c.2739	p.I913M	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	204	0	0	130	93	41.7	-	-	-	G	127507374	A	G	127507374	3	3	569	1	0	0	0	0	1	0	0	0	14472	381	14	5	2813	5	SLC12A2	5	127507374	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	12647007	127507374	53407886	409	50365										
PSD2	0	genome.wustl.edu	37	chr5	139189067	139189067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgcagtgcctgaggaaggCgatgccacccgtgaccccgg	14	14	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	139189067	139189067	C	T	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	silent	c.42	p.G14	0.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	15	0	0	17	8	29.63	-	-	-	T	139189067	C	T	139189067	2	4	569	1	0	0	0	0	0	0	0	1	12727	755	27	1		1	PSD2	5	139189067	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	11681693	139189067	41726193	410	50366										
ANKHD1	0	genome.wustl.edu	37	chr5	139818109	139818109	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcctgaggtactccggagacTgacatcctcagttagttgtg	11	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	139818109	139818109	T	C	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.524	p.L175P	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	264	0	0	204	117	36.45	-	-	-	C	139818109	T	C	139818109	3	2	569	1	0	0	0	0	1	0	0	0	628	1580	55	5	534	5	ANKHD1	5	139818109	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	629042	139818109	41097151	411	50367										
PCDHA8	0	genome.wustl.edu	37	chr5	140222350	140222350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacggtgtctgcgcgagacGcggacgcgcaggagaacgcg	17	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140222350	140222350	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.1444	p.A482T	0.168	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	92	0	0	66	53	44.54	-	-	-	A	140222350	G	A	140222350	3	1	569	1	0	0	0	0	1	0	0	0	11603	1087	38	1	1446	1	PCDHA8	5	140222350	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	404241	140222350	40692910	412	50368										
PCDHA10	0	genome.wustl.edu	37	chr5	140236951	140236951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgctgtgggccacggccagcGtgtctgtggaggtggccgac	18	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140236951	140236951	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1318	p.V440M	0.225	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	149	0	0	111	65	36.93	-	-	-	A	140236951	G	A	140236951	3	1	569	1	0	0	0	0	1	0	0	0	11593	1145	40	1	1320	1	PCDHA10	5	140236951	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	14601	140236951	40678309	413	50369										
PCDHB8	0	genome.wustl.edu	37	chr5	140558614	140558614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcttttctggaaaatgcacCgttctgattcaagtgataga	10	7	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140558614	140558614	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	silent	c.999	p.T333	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	316	2	0.63	273	77	22	-	-	-	T	140558614	C	T	140558614	2	4	569	1	0	0	0	0	0	0	0	1	11621	639	23	1		1	PCDHB8	5	140558614	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	321663	140558614	40356646	414	50370										
PCDHB12	0	genome.wustl.edu	37	chr5	140588743	140588743	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggatttgctcctgagagaAatgctagacagggaggagct	16	6	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140588743	140588743	A	G	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	silent	c.264	p.E88	0.410	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	194	0	0	126	74	36.82	-	-	-	G	140588743	A	G	140588743	2	3	569	1	0	0	0	0	0	0	0	1	11610	11	1	5		5	PCDHB12	5	140588743	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	30129	140588743	40326517	415	50371										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711001	140711001	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggcacaataccatataaaTgtccccgaaaacgtgccgct	7	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140711001	140711001	T	C	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	silent	c.750	p.N250	0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	115	0	0	63	61	49.19	-	-	-	C	140711001	T	C	140711001	2	2	569	1	0	0	0	0	0	0	0	1	11623	1461	51	5		5	PCDHGA1	5	140711001	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	122258	140711001	40204259	416	50372										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725634	140725634	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggccgacctgggcagcctCgagccctccgccaaacccaa	10	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140725634	140725634	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.2034	p.L678	0.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	127	1	0.78	76	40	34.48	-	-	-	T	140725634	C	T	140725634	2	4	569	1	0	0	0	0	0	0	0	1	11628	871	31	1		1	PCDHGA3	5	140725634	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	14633	140725634	40189626	417	50373										
PCDHGC4	0	genome.wustl.edu	37	chr5	140866005	140866005	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaggccaaatctagctatgAcatcatggtcactgcttctg	9	10	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140866005	140866005	A	G	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	missense	c.1265	p.D422G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	119	0	0	62	50	44.64	-	-	-	G	140866005	A	G	140866005	3	3	569	1	0	0	0	0	1	0	0	0	11643	275	10	5	1267	5	PCDHGC4	5	140866005	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	140371	140866005	40049255	418	50374										
PCDHGC5	0	genome.wustl.edu	37	chr5	140870733	140870733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggatgactctgacacccaGcaggtggtggtcctggtgag	16	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	140870733	140870733	G	A	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	silent	c.1926	p.Q642	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	145	0	0	86	54	38.57	-	-	-	A	140870733	G	A	140870733	2	1	569	1	0	0	0	0	0	0	0	1	11644	962	34	4		4	PCDHGC5	5	140870733	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4728	140870733	40044527	419	50375										
FCHSD1	0	genome.wustl.edu	37	chr5	141019879	141019879	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaggtaggaaaacacagccGggactgcactgggctgggct	15	11	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	141019879	141019879	G	A	SNP	FCHSD1	ENST00000523856	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948	218	0	0	111	101	47.42	-	-	-	A	141019879	G	A	141019879	1	1	569	0	1	0	0	0	0	0	0	0	5835	1131	39	1		1	FCHSD1	5	141019879	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	149146	141019879	39895381	420	50376										
PCDH1	0	genome.wustl.edu	37	chr5	141243711	141243711	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtctcaccaagacgtgtctGgggggtcagcagcttgtgag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	141243711	141243711	G	-	DEL	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	frame_shift_del	c.2185	p.Q729fs	0.992	superfamily_Cadherin-like	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	309	0	0	217	89	28.25	-	-	-	-	141243711	G	-	141243711	7	5	569	1	0	1	0	1	0	0	0	0	11579	1357	47	0	1624	0	PCDH1	5	141243711	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	223832	141243711	39671549	421	50377										
ARHGAP26	0	genome.wustl.edu	37	chr5	142593593	142593593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaaggcaaaagccttgtatGcctgcaaagctgaacatgac	11	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	142593593	142593593	G	A	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.2296	p.A766T	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	94	0	0	62	40	39.22	-	-	-	A	142593593	G	A	142593593	3	1	569	1	0	0	0	0	1	0	0	0	877	1319	46	4	2382	4	ARHGAP26	5	142593593	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1349882	142593593	38321667	422	50378										
ADRB2	0	genome.wustl.edu	37	chr5	148206709	148206709	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggacttttggcaacttctgGtgcgagttttggacttccat	11	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	148206709	148206709	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	69_37n	1	known	nonsense	c.315	p.W105*	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrgc_rcpt_B2,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRB2	HGNC	ENSG00000169252	303	0	0	181	101	35.69	-	-	-	A	148206709	G	A	148206709	4	1	569	1	0	0	0	0	0	1	0	0	341	1270	44	4	317	4	ADRB2	5	148206709	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5613116	148206709	32708551	423	50379										
ZNF300	0	genome.wustl.edu	37	chr5	150278031	150278031	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agttctccagcatcacatccCtgtacagggtcctctgagaa	8	13	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	150278031	150278031	C	A	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.149	p.R50M	0.997	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	309	0	0	146	83	36.24	-	-	-	A	150278031	C	A	150278031	3	1	569	1	0	0	0	0	1	0	0	0	17927	681	24	4	1725	4	ZNF300	5	150278031	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2071322	150278031	30637229	424	50380										
SLC36A2	0	genome.wustl.edu	37	chr5	150696581	150696581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgggatgatgagggccagggCggtgccactcacggagccca	17	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	150696581	150696581	C	T	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	missense	c.1249	p.A417T	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	209	1	0.48	109	76	39.79	-	-	-	T	150696581	C	T	150696581	3	4	569	1	0	0	0	0	1	0	0	0	14683	768	27	1	206	1	SLC36A2	5	150696581	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	418550	150696581	30218679	425	50381										
GRIA1	0	genome.wustl.edu	37	chr5	153078609	153078609	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacacgaaggcctggaatggCatggtgggagagctggtcta	17	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	153078609	153078609	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	silent	c.1458	p.G486	1.000	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	256	0	0	158	87	35.22	-	-	-	T	153078609	C	T	153078609	2	4	569	1	0	0	0	0	0	0	0	1	6818	697	25	4		4	GRIA1	5	153078609	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2382028	153078609	27836651	426	50382										
ATP10B	0	genome.wustl.edu	37	chr5	160047421	160047421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggtgtagacaacaatctcGccagtcagtgggtgcctcac	11	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	160047421	160047421	G	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.2349	p.G783	0.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	90	0	0	59	39	39.8	-	-	-	A	160047421	G	A	160047421	2	1	569	1	0	0	0	0	0	0	0	1	1121	1074	38	1		1	ATP10B	5	160047421	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6968812	160047421	20867839	427	50383										
ODZ2	0	genome.wustl.edu	37	chr5	167622300	167622300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcacccgccaggatggcaCgtgagtagctttgtggggct	14	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	167622300	167622300	C	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.2900	p.T967M	1.000	superfamily_CarboxyPept-like_regulatory,superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	233	0	0	135	93	40.79	-	-	-	T	167622300	C	T	167622300	3	4	569	1	0	0	0	0	1	0	0	0	10908	550	19	1	2931	1	ODZ2	5	167622300	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7574879	167622300	13292960	428	50384										
NKX2-5	0	genome.wustl.edu	37	chr5	172659767	172659767	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagggctgcaggccgcgccGccgtaacccggataggcggg	17	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	172659767	172659767	G	A	SNP	NKX2-5	ENST00000329198	human	ensembl	69_37n	-1	known	silent	c.780	p.G260	0.001	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	NKX2-5	HGNC	ENSG00000183072	15	0	0	9	5	35.71	-	-	-	A	172659767	G	A	172659767	2	1	569	1	0	0	0	0	0	0	0	1	10525	1074	38	1		1	NKX2-5	5	172659767	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5037467	172659767	8255493	429	50385										
FAM153B	0	genome.wustl.edu	37	chr5	175540825	175540825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcagcaagtccttcctctgCacctgcagaagaagcaacag	9	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	175540825	175540825	C	T	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	missense	c.1025	p.A342V	0.000	prints_FAM153	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	174	0	0	101	58	36.48	-	-	-	T	175540825	C	T	175540825	3	4	569	1	0	0	0	0	1	0	0	0	5501	710	25	4	1103	4	FAM153B	5	175540825	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2881058	175540825	5374435	430	50386										
FAF2	0	genome.wustl.edu	37	chr5	175916028	175916028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacgatacttgatatatttaGgtatgtacctttggatttat	7	5	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	175916028	175916028	G	T	SNP	FAF2	ENST00000261942	human	ensembl	69_37n	1	known	missense	c.344	p.R115M	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,pfscan_UBX	-	no_errors	FAF2	HGNC	ENSG00000113194	470	0	0	309	176	36.29	-	-	-	T	175916028	G	T	175916028	3	4	569	1	0	0	0	0	1	0	0	0	5410	1014	35	4	358	4	FAF2	5	175916028	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	375203	175916028	4999232	431	50387										
GRK6	0	genome.wustl.edu	37	chr5	176863419	176863419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcaaggaccctgccgaacGcctggggtgtcgtgggggca	17	12	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	176863419	176863419	G	A	SNP	GRK6	ENST00000528793	human	ensembl	69_37n	1	known	missense	c.1292	p.R431H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK6	HGNC	ENSG00000198055	44	0	0	22	17	42.5	-	-	-	A	176863419	G	A	176863419	3	1	569	1	0	0	0	0	1	0	0	0	6844	1087	38	1	1342	1	GRK6	5	176863419	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	947391	176863419	4051841	432	50388										
FAM193B	0	genome.wustl.edu	37	chr5	176951489	176951489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggccagcgacctggccctTggcactgggaacctctaggc	15	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	176951489	176951489	T	C	SNP	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	missense	c.1894	p.K632E	0.989	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	40	0	0	36	16	30.77	-	-	-	C	176951489	T	C	176951489	3	2	569	1	0	0	0	0	1	0	0	0	5567	1821	63	5	487	5	FAM193B	5	176951489	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	88070	176951489	3963771	433	50389										
AGXT2L2	0	genome.wustl.edu	37	chr5	177642316	177642316	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatgtttgattttttgctgcCcgaggagctgcatcaggaag	13	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	177642316	177642316	C	A	SNP	AGXT2L2	ENST00000308158	human	ensembl	69_37n	-1	known	missense	c.1043	p.G348V	0.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L2	HGNC	ENSG00000175309	42	0	0	22	17	43.59	-	-	-	A	177642316	C	A	177642316	3	1	569	1	0	0	0	0	1	0	0	0	407	623	22	4	325	4	AGXT2L2	5	177642316	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	690827	177642316	3272944	434	50390										
C5orf45	0	genome.wustl.edu	37	chr5	179271182	179271182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acattcccagcctgctggtgTcccacgttttcttcttcact	6	15	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	179271182	179271182	T	C	SNP	C5orf45	ENST00000292586	human	ensembl	69_37n	-1	known	silent	c.261	p.G87	0.000	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	271	1	0.37	189	102	35.05	-	-	-	C	179271182	T	C	179271182	2	2	569	1	0	0	0	0	0	0	0	1	2325	1654	58	5		5	C5orf45	5	179271182	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1628866	179271182	1644078	435	50391										
BTNL9	0	genome.wustl.edu	37	chr5	180475112	180475112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccctggcaggcagatgccgGcgttccggaacaggaccaag	14	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	5	180475112	180475112	G	A	SNP	BTNL9	ENST00000376842	human	ensembl	69_37n	1	known	missense	c.295	p.A99T	0.833	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL9	HGNC	ENSG00000165810	92	0	0	69	37	34.58	-	-	-	A	180475112	G	A	180475112	3	1	569	1	0	0	0	0	1	0	0	0	1577	1203	42	4	301	4	BTNL9	5	180475112	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1203930	180475112	440148	436	50392										
SERPINB9	0	genome.wustl.edu	37	chr6	2892088	2892088	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgctgagctccacgccgtcGtcaggcagcagcaccagcag	13	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	2892088	2892088	G	A	SNP	SERPINB9	ENST00000380698	human	ensembl	69_37n	-1	known	silent	c.702	p.D234	0.020	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB9	HGNC	ENSG00000170542	50	0	0	19	13	40.62	-	-	-	A	2892088	G	A	2892088	2	1	569	1	0	0	0	0	0	0	0	1	14196	1136	40	1		1	SERPINB9	6	2892088	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09		2892088	168222979	437	50393										
GCNT2	0	genome.wustl.edu	37	chr6	10626934	10626934	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccttcgtaatgttaaccgTttcaggaccacgtttatagc	8	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	10626934	10626934	T	C	SNP	GCNT2	ENST00000397423	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCNT2	HGNC	ENSG00000111846	51	0	0	29	22	43.14	-	-	-	C	10626934	T	C	10626934	1	2	569	0	1	0	0	0	0	0	0	0	6351	1740	60	5		5	GCNT2	6	10626934	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7734846	10626934	160488133	438	50394										
ZNF323	0	genome.wustl.edu	37	chr6	28293971	28293971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctccagtgtggattttcTgatgtttcttaagaagtgtc	9	7	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	28293971	28293971	T	C	SNP	ZNF323	ENST00000344279	human	ensembl	69_37n	-1	known	missense	c.1193	p.Q398R	0.968	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF323	HGNC	ENSG00000235109	388	0	0	244	164	40.2	-	-	-	C	28293971	T	C	28293971	3	2	569	1	0	0	0	0	1	0	0	0	17939	1580	55	5	31	5	ZNF323	6	28293971	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	17667037	28293971	142821096	439	50395										
SCAND3	0	genome.wustl.edu	37	chr6	28540866	28540866	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttgtaggcaaagaggctgAaaaaaagaactcttccttta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	28540866	28540866	A	-	DEL	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	frame_shift_del	c.2800	p.S934fs	1.000	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	136	0	0	81	53	38.69	-	-	-	-	28540866	A	-	28540866	7	5	569	1	0	1	0	1	0	0	0	0	13963	246	9	0	1181	0	SCAND3	6	28540866	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	246895	28540866	142574201	440	50396										
TRIM27	0	genome.wustl.edu	37	chr6	28876593	28876593	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agataaatttaccttggattTtctccatatctgactgcatt	5	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	28876593	28876593	T	C	SNP	TRIM27	ENST00000377199	human	ensembl	69_37n	-1	known	missense	c.911	p.K304R	1.000	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM27	HGNC	ENSG00000204713	284	0	0	196	136	40.96	-	-	-	C	28876593	T	C	28876593	3	2	569	1	0	0	0	0	1	0	0	0	16597	1841	64	5	642	5	TRIM27	6	28876593	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	335727	28876593	142238474	441	50397										
IER3	0	genome.wustl.edu	37	chr6	30711813	30711813	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctcgaggacggcggacacaGgggtgggcgccagggatgcg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	30711813	30711813	G	-	DEL	IER3	ENST00000259874	human	ensembl	69_37n	-1	known	frame_shift_del	c.371	p.P124fs	0.001	NULL	NULL	-	no_errors	IER3	HGNC	ENSG00000137331	214	0	0	120	59	32.07	-	-	-	-	30711813	G	-	30711813	7	5	569	1	0	1	0	1	0	0	0	0	7560	1000	35	0	103	0	IER3	6	30711813	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	1835220	30711813	140403254	442	50398										
BRPF3	0	genome.wustl.edu	37	chr6	36179276	36179276	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagctgccagcagggccccaGggggatgcagctgtgctgga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	36179276	36179276	G	-	DEL	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	frame_shift_del	c.2421	p.D809fs	0.490	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	70	0	0	52	17	24.64	-	-	-	-	36179276	G	-	36179276	7	5	569	1	0	1	0	1	0	0	0	0	1529	991	35	0	2443	0	BRPF3	6	36179276	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	5467463	36179276	134935791	443	50399										
TBC1D22B	0	genome.wustl.edu	37	chr6	37298829	37298829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgcattccagggtctcctcAtgctgctacagaacctacct	7	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	37298829	37298829	A	G	SNP	TBC1D22B	ENST00000373491	human	ensembl	69_37n	1	known	missense	c.1399	p.M467V	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	250	1	0.4	188	101	34.95	-	-	-	G	37298829	A	G	37298829	3	3	569	1	0	0	0	0	1	0	0	0	15704	217	8	5	1449	5	TBC1D22B	6	37298829	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1119553	37298829	133816238	444	50400										
MDGA1	0	genome.wustl.edu	37	chr6	37606043	37606043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcagtgtgacgtcatctatgGcaatatcccccaggtagccc	9	13	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	37606043	37606043	G	A	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.2726	p.A909V	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	276	0	0	173	96	35.69	-	-	-	A	37606043	G	A	37606043	3	1	569	1	0	0	0	0	1	0	0	0	9477	1203	42	4	161	4	MDGA1	6	37606043	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	307214	37606043	133509024	445	50401										
MDGA1	0	genome.wustl.edu	37	chr6	37626113	37626113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgccctgcgtgcgtgcaataCgctcgatgcgcagcgtctcg	13	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	37626113	37626113	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.290	p.R97H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	57	0	0	46	22	32.35	-	-	-	T	37626113	C	T	37626113	3	4	569	1	0	0	0	0	1	0	0	0	9477	536	19	1	2637	1	MDGA1	6	37626113	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	20070	37626113	133488954	446	50402										
DAAM2	0	genome.wustl.edu	37	chr6	39855321	39855321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcaaggtcaaagagctgtcGgtcattgatggccggagggc	16	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	39855321	39855321	G	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	silent	c.2013	p.S671	0.009	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	218	1	0.46	143	79	35.59	-	-	-	A	39855321	G	A	39855321	2	1	569	1	0	0	0	0	0	0	0	1	4248	1103	39	1		1	DAAM2	6	39855321	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2229208	39855321	131259746	447	50403										
UBR2	0	genome.wustl.edu	37	chr6	42627561	42627562	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagagatcaactgtattatcINSaaaaaacagaagtaaattta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	42627561	42627562	-	A	INS	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	frame_shift_ins	c.3410_3411	p.N1139fs	1.000:1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	245	0	0	187	80	29.96	-	-	-	A	42627562	-	A	42627561	7	5	569	1	0	1	1	0	0	0	0	0	16999	838	29	0	3674	0	UBR2	6	42627561	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	2772240	42627561	128487506	448	50404										
UBR2	0	genome.wustl.edu	37	chr6	42641867	42641867	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctttaaatctgtagcacTggtgcctaatgacagccatg	8	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	42641867	42641867	T	C	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.4187	p.L1396P	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	468	3	0.64	322	183	36.09	-	-	-	C	42641867	T	C	42641867	3	2	569	1	0	0	0	0	1	0	0	0	16999	1580	55	5	4483	5	UBR2	6	42641867	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	14306	42641867	128473200	449	50405										
SLC22A7	0	genome.wustl.edu	37	chr6	43268964	43268964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actgtgccaggctcaatgggCggccagtgtgtgaggacagc	16	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	43268964	43268964	C	T	SNP	SLC22A7	ENST00000372585	human	ensembl	69_37n	1	known	missense	c.919	p.R307W	0.084	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204	688	1	0.14	386	247	38.96	-	-	-	T	43268964	C	T	43268964	3	4	569	1	0	0	0	0	1	0	0	0	14548	759	27	1	937	1	SLC22A7	6	43268964	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	627097	43268964	127846103	450	50406										
ABCC10	0	genome.wustl.edu	37	chr6	43416708	43416708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagggcctacataaggacaGggccttgtggcaggccctga	14	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	43416708	43416708	G	A	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.4049	p.R1350K	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	233	1	0.43	144	88	37.93	-	-	-	A	43416708	G	A	43416708	3	1	569	1	0	0	0	0	1	0	0	0	50	1000	35	4	4031	4	ABCC10	6	43416708	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	147744	43416708	127698359	451	50407										
GPR116	0	genome.wustl.edu	37	chr6	46834803	46834803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatgttcagctttagaggcaGcgggtgaacaatgacgtctt	13	7	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	46834803	46834803	G	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.1693	p.L565	0.804	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	310	1	0.32	221	111	33.43	-	-	-	A	46834803	G	A	46834803	2	1	569	1	0	0	0	0	0	0	0	1	6683	962	34	4		4	GPR116	6	46834803	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3418095	46834803	124280264	452	50408										
CRISP1	0	genome.wustl.edu	37	chr6	49806200	49806200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggcttcacatgggacgcctGtcttataaggttcattcttt	9	9	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	49806200	49806200	G	A	SNP	CRISP1	ENST00000335847	human	ensembl	69_37n	-1	known	missense	c.572	p.T191I	0.000	NULL	pfam_Cysteine_rich_secretory,pfam_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	CRISP1	HGNC	ENSG00000124812	340	0	0	257	146	36.23	-	-	-	A	49806200	G	A	49806200	3	1	569	1	0	0	0	0	1	0	0	0	3909	1377	48	4	185	4	CRISP1	6	49806200	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2971397	49806200	121308867	453	50409										
PKHD1	0	genome.wustl.edu	37	chr6	51889528	51889528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgtggttaccagagacacCcacacagggtgacattccta	11	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	51889528	51889528	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.5080	p.G1694S	0.002	superfamily_Ig_E-set	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	76	0	0	62	29	31.87	-	-	-	T	51889528	C	T	51889528	3	4	569	1	0	0	0	0	1	0	0	0	12045	623	22	4	7327	4	PKHD1	6	51889528	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2083328	51889528	119225539	454	50410										
KLHL31	0	genome.wustl.edu	37	chr6	53519520	53519520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgctgcttttgcattttttAgggagtatgtttcagcaata	9	6	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	53519520	53519520	A	G	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	missense	c.551	p.L184P	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	282	0	0	202	131	39.22	-	-	-	G	53519520	A	G	53519520	3	3	569	1	0	0	0	0	1	0	0	0	8438	420	15	5	1361	5	KLHL31	6	53519520	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1629992	53519520	117595547	455	50411										
DST	0	genome.wustl.edu	37	chr6	56354315	56354315	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgcaagttgtgtttttatTttgtctggatcatttgcgat	10	4	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	56354315	56354315	T	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	silent	c.20757	p.K6919	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	542	0	0	398	274	40.77	-	-	-	C	56354315	T	C	56354315	2	2	569	1	0	0	0	0	0	0	0	1	4818	1838	64	5		5	DST	6	56354315	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2834795	56354315	114760752	456	50412										
LGSN	0	genome.wustl.edu	37	chr6	63990012	63990012	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttcatggcaacaaaatatcGaataaaggtttctcctagag	7	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	63990012	63990012	G	A	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	nonsense	c.1444	p.R482*	0.971	NULL	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	137	1	0.72	102	57	35.85	-	-	-	A	63990012	G	A	63990012	4	1	569	1	0	0	0	0	0	1	0	0	8814	1066	37	1	89	1	LGSN	6	63990012	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	7635697	63990012	107125055	457	50413										
COL9A1	0	genome.wustl.edu	37	chr6	70984477	70984477	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcaggtcctgttaatcccTaatagagcaagacaatgatg	8	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	70984477	70984477	T	C	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	splice_site	c.976-2	e11-2	0.973	-	-	-	no_errors	COL9A1	HGNC	ENSG00000112280	260	1	0.38	176	104	37.01	-	-	-	C	70984477	T	C	70984477	5	2	569	1	0	0	0	0	0	0	1	0	3737	1536	53	5	1903	5	COL9A1	6	70984477	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6994465	70984477	100130590	458	50414										
DDX43	0	genome.wustl.edu	37	chr6	74104723	74104723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcgccagagaggaggccggCggaggagttgaatcgaacag	18	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	74104723	74104723	C	T	SNP	DDX43	ENST00000370336	human	ensembl	69_37n	1	known	missense	c.95	p.A32V	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007	67	0	0	51	29	35.37	-	-	-	T	74104723	C	T	74104723	3	4	569	1	0	0	0	0	1	0	0	0	4394	768	27	1	97	1	DDX43	6	74104723	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3120246	74104723	97010344	459	50415										
PHIP	0	genome.wustl.edu	37	chr6	79698060	79698060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atccaggaaatgctcatgagCatgattctagaaaaaaataa	7	6	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	79698060	79698060	C	T	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.2326	p.A776T	0.996	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	254	0	0	198	122	38.01	-	-	-	T	79698060	C	T	79698060	3	4	569	1	0	0	0	0	1	0	0	0	11916	710	25	4	3219	4	PHIP	6	79698060	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5593337	79698060	91417007	460	50416										
GJB7	0	genome.wustl.edu	37	chr6	87993980	87993980	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacacactgaggacttgaggTttttttaaatatttttggag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	87993980	87993980	T	-	DEL	GJB7	ENST00000296882	human	ensembl	69_37n	-1	known	frame_shift_del	c.651	p.K217fs	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB7	HGNC	ENSG00000164411	76	0	0	55	38	39.58	-	-	-	-	87993980	T	-	87993980	7	5	569	1	0	1	0	1	0	0	0	0	6465	1722	60	0	24	0	GJB7	6	87993980	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	8295920	87993980	83121087	461	50417										
USP45	0	genome.wustl.edu	37	chr6	99885238	99885238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactatgttccactatgccaTagagaccgtagagaacttta	7	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	99885238	99885238	T	C	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.2198	p.Y733C	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	352	0	0	266	180	40.36	-	-	-	C	99885238	T	C	99885238	3	2	569	1	0	0	0	0	1	0	0	0	17173	1406	49	5	254	5	USP45	6	99885238	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	11891258	99885238	71229829	462	50418										
MCHR2	0	genome.wustl.edu	37	chr6	100403852	100403852	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cattccttaccttattatagTgaatacaatgaggatgttgc	7	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	100403852	100403852	T	C	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	missense	c.172	p.T58A	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	89	0	0	57	35	38.04	-	-	-	C	100403852	T	C	100403852	3	2	569	1	0	0	0	0	1	0	0	0	9454	1696	59	5	870	5	MCHR2	6	100403852	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	518614	100403852	70711215	463	50419										
PREP	0	genome.wustl.edu	37	chr6	105771556	105771556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atacctggactgtctggtaaTcagaagcatcaattcctttt	7	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	105771556	105771556	T	C	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	missense	c.1301	p.D434G	1.000	NULL	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	378	0	0	283	106	27.25	-	-	-	C	105771556	T	C	105771556	3	2	569	1	0	0	0	0	1	0	0	0	12555	1435	50	5	855	5	PREP	6	105771556	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5367704	105771556	65343511	464	50420										
ARMC2	0	genome.wustl.edu	37	chr6	109282824	109282824	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggtgatcaatgctacagcGacaatcaacaatttatctta	6	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	109282824	109282824	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	silent	c.1965	p.A655	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	186	0	0	164	91	35.69	-	-	-	A	109282824	G	A	109282824	2	1	569	1	0	0	0	0	0	0	0	1	955	1045	37	1		1	ARMC2	6	109282824	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3511268	109282824	61832243	465	50421										
SLC16A10	0	genome.wustl.edu	37	chr6	111498537	111498537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgccttggactggtgaatgGcattgtcactgctggcagca	14	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	111498537	111498537	G	A	SNP	SLC16A10	ENST00000368851	human	ensembl	69_37n	1	known	missense	c.611	p.G204D	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394	295	0	0	238	106	30.72	-	-	-	A	111498537	G	A	111498537	3	1	569	1	0	0	0	0	1	0	0	0	14492	1203	42	4	621	4	SLC16A10	6	111498537	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2215713	111498537	59616530	466	50422										
REV3L	0	genome.wustl.edu	37	chr6	111696541	111696541	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttccattttttcttctgttAatattacttgtttttcttta	3	6	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	111696541	111696541	A	G	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.3017	p.L1006S	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	113	0	0	82	64	43.84	-	-	-	G	111696541	A	G	111696541	3	3	569	1	0	0	0	0	1	0	0	0	13323	372	13	5	6455	5	REV3L	6	111696541	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	198004	111696541	59418526	467	50423										
WISP3	0	genome.wustl.edu	37	chr6	112389433	112389434	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaatctcccacttatttggINSaaaaaaaaatgtcttgtgca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	112389433	112389434	-	A	INS	WISP3	ENST00000361714	human	ensembl	69_37n	1	known	frame_shift_ins	c.669_670	p.C226fs	1.000:1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761	154	0	0	91	53	36.81	-	-	-	A	112389434	-	A	112389433	7	5	569	1	0	1	1	0	0	0	0	0	17471	1183	41	0	683	0	WISP3	6	112389433	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	692892	112389433	58725634	468	50424										
FRK	0	genome.wustl.edu	37	chr6	116264331	116264331	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atttcgtgtctagattcataGatgtcttcattatctacctg	6	8	5	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	116264331	116264331	G	A	SNP	FRK	ENST00000368626	human	ensembl	69_37n	-1	known	silent	c.1158	p.I386	0.995	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	FRK	HGNC	ENSG00000111816	200	1	0.5	151	82	35.19	-	-	-	A	116264331	G	A	116264331	2	1	569	1	0	0	0	0	0	0	0	1	6097	932	33	2		2	FRK	6	116264331	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3874898	116264331	54850736	469	50425										
COL10A1	0	genome.wustl.edu	37	chr6	116442918	116442918	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccttttggtccatatggtcCtctctctcctggttttcctg	7	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	116442918	116442918	C	A	SNP	COL10A1	ENST00000243222	human	ensembl	69_37n	-1	known	nonsense	c.361	p.G121*	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500	145	0	0	92	69	42.86	-	-	-	A	116442918	C	A	116442918	4	1	569	1	0	0	0	0	0	1	0	0	3696	690	24	4	1685	4	COL10A1	6	116442918	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	178587	116442918	54672149	470	50426										
FAM26E	0	genome.wustl.edu	37	chr6	116833357	116833357	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaactagcatgctacctacCgtcaatgaagaactgaaact	6	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	116833357	116833357	C	T	SNP	FAM26E	ENST00000368599	human	ensembl	69_37n	1	known	silent	c.498	p.T166	0.000	NULL	NULL	-	no_errors	FAM26E	HGNC	ENSG00000178033	106	0	0	69	37	34.91	-	-	-	T	116833357	C	T	116833357	2	4	569	1	0	0	0	0	0	0	0	1	5596	639	23	1		1	FAM26E	6	116833357	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	390439	116833357	54281710	471	50427										
SLC35F1	0	genome.wustl.edu	37	chr6	118596758	118596759	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgattggtctctttggagcaINStttttcagtggaattcaatt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	118596758	118596759	-	T	INS	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	frame_shift_ins	c.774_775	p.S260fs	0.998:1.000	pfam_DUF914_euk,pfam_DMT	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	229	0	0	164	106	39.26	-	-	-	T	118596759	-	T	118596758	7	5	569	1	0	1	1	0	0	0	0	0	14677	204	8	0	792	0	SLC35F1	6	118596758	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1763401	118596758	52518309	472	50428										
NCOA7	0	genome.wustl.edu	37	chr6	126243864	126243864	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcaagggtgcaagggtatCcatggagactggcctatagc	14	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	126243864	126243864	C	A	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	1	known	missense	c.2407	p.P803T	1.000	smart_TLDc	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	220	0	0	161	92	36.36	-	-	-	A	126243864	C	A	126243864	3	1	569	1	0	0	0	0	1	0	0	0	10306	855	30	2	2453	2	NCOA7	6	126243864	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7647106	126243864	44871203	473	50429										
RNF146	0	genome.wustl.edu	37	chr6	127608398	127608398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agagtggagcttctgttcagCccctagtgtcttctgtaagg	12	9	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	127608398	127608398	C	T	SNP	RNF146	ENST00000368314	human	ensembl	69_37n	1	known	missense	c.640	p.P214S	1.000	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518	227	1	0.44	138	82	37.27	-	-	-	T	127608398	C	T	127608398	3	4	569	1	0	0	0	0	1	0	0	0	13534	739	26	4	639	4	RNF146	6	127608398	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1364534	127608398	43506669	474	50430										
RNF146	0	genome.wustl.edu	37	chr6	127608744	127608744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccgatcgatcagatcgatCgggaactgatcgatcagtag	11	10	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	127608744	127608744	C	T	SNP	RNF146	ENST00000368314	human	ensembl	69_37n	1	known	missense	c.986	p.S329L	0.018	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518	171	0	0	95	75	43.86	-	-	-	T	127608744	C	T	127608744	3	4	569	1	0	0	0	0	1	0	0	0	13534	893	31	1	985	1	RNF146	6	127608744	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	346	127608744	43506323	475	50431										
ENPP3	0	genome.wustl.edu	37	chr6	132054739	132054739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgaacagggagacacatcGcctctgcctcccactgtccc	8	16	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	132054739	132054739	G	A	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	silent	c.1965	p.S655	0.990	smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	187	0	0	135	91	39.39	-	-	-	A	132054739	G	A	132054739	2	1	569	1	0	0	0	0	0	0	0	1	5168	1074	38	1		1	ENPP3	6	132054739	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4445995	132054739	39060328	476	50432										
TAAR2	0	genome.wustl.edu	37	chr6	132945414	132945414	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgctctgatgagacagccaTgggaggcaagataccccaga	12	10	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	132945414	132945414	T	C	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	missense	c.1	p.M1V	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	426	1	0.23	316	149	31.97	-	-	-	C	132945414	T	C	132945414	3	2	569	1	0	0	0	0	1	0	0	0	15582	1478	51	5	1062	5	TAAR2	6	132945414	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	890675	132945414	38169653	477	50433										
KIAA1244	0	genome.wustl.edu	37	chr6	138619770	138619770	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccataaggaaagacatgtgTctcagaaggctgtttccttc	10	9	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	138619770	138619770	T	A	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.3676	p.S1226T	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	200	1	0.49	156	89	36.03	-	-	-	A	138619770	T	A	138619770	3	1	569	1	0	0	0	0	1	0	0	0	8269	1667	58	5	3762	5	KIAA1244	6	138619770	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5674356	138619770	32495297	478	50434										
GPR126	0	genome.wustl.edu	37	chr6	142630780	142630780	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcatgtgtgttcctcactcAggtaagactcttcctctttc	6	12	5	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	142630780	142630780	A	G	SNP	GPR126	ENST00000367609	human	ensembl	69_37n	1	known	silent	c.102	p.S34	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_CUB,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Pentaxin,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	323	0	0	97	262	72.98	-	-	-	G	142630780	A	G	142630780	2	3	569	1	0	0	0	0	0	0	0	1	6690	202	7	5		5	GPR126	6	142630780	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	4011010	142630780	28484287	479	50435										
PLEKHG1	0	genome.wustl.edu	37	chr6	151161115	151161115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccaggtccaccatggtagtGgagactggcttctgcattca	11	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	151161115	151161115	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.3241	p.G1081R	0.970	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	134	0	0	40	108	72.97	-	-	-	A	151161115	G	A	151161115	3	1	569	1	0	0	0	0	1	0	0	0	12142	1349	47	4	3299	4	PLEKHG1	6	151161115	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8530335	151161115	19953952	480	50436										
ARID1B	0	genome.wustl.edu	37	chr6	157505482	157505482	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctgtttgcctttgagtgcAagatcgaacgtggggaggag	15	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	157505482	157505482	A	T	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	nonsense	c.3583	p.K1195*	1.000	superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	119	0	0	24	80	76.92	-	-	-	T	157505482	A	T	157505482	4	4	569	1	0	0	0	0	0	1	0	0	916	131	5	5	3513	5	ARID1B	6	157505482	Nonsense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6344367	157505482	13609585	481	50437										
SYNJ2	0	genome.wustl.edu	37	chr6	158516726	158516726	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccggagacaagcgttgaggCccctcctgtcgtgacagccc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	6	158516726	158516726	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	69_37n	1	known	frame_shift_del	c.3821	p.P1275fs	0.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269	130	0	0	85	47	34.56	-	-	-	-	158516726	C	-	158516726	7	5	569	1	0	1	0	1	0	0	0	0	15545	739	26	0	3927	0	SYNJ2	6	158516726	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1011244	158516726	12598341	482	50438										
GPR146	0	genome.wustl.edu	37	chr7	1097299	1097299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctacaacgccctgctggtgCtggccaacctacacagcaag	10	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	1097299	1097299	C	T	SNP	GPR146	ENST00000297468	human	ensembl	69_37n	1	known	silent	c.148	p.L50	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR146	HGNC	ENSG00000164849	23	0	0	18	14	43.75	-	-	-	T	1097299	C	T	1097299	2	4	569	1	0	0	0	0	0	0	0	1	6702	796	28	4		4	GPR146	7	1097299	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		1097299	158041364	483	50439										
MICALL2	0	genome.wustl.edu	37	chr7	1484421	1484422	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgccagaaaggctggtgccINSggggggcactgctgatgttt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	1484421	1484422	-	G	INS	MICALL2	ENST00000297508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1285_1284	p.G428fs	0.001:0.095	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL2	HGNC	ENSG00000164877	23	0	0	19	8	29.63	-	-	-	G	1484422	-	G	1484421	7	5	569	1	0	1	1	0	0	0	0	0	9645	652	23	0	1477	0	MICALL2	7	1484421	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	387122	1484421	157654242	484	50440										
CHST12	0	genome.wustl.edu	37	chr7	2472871	2472871	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgcgccctaccgcgacccGctgcgcatcccgcgcgagca	13	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	2472871	2472871	G	A	SNP	CHST12	ENST00000258711	human	ensembl	69_37n	1	known	silent	c.597	p.P199	0.019	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST12	HGNC	ENSG00000136213	21	0	0	8	9	52.94	-	-	-	A	2472871	G	A	2472871	2	1	569	1	0	0	0	0	0	0	0	1	3429	1074	38	1		1	CHST12	7	2472871	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	988450	2472871	156665792	485	50441										
FBXL18	0	genome.wustl.edu	37	chr7	5540380	5540380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcagggtgggagcgagttgCggatggcgggctcgttgcgg	22	7	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	5540380	5540380	C	T	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.1520	p.R507H	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	8	0	0	1	13	92.86	-	-	-	T	5540380	C	T	5540380	3	4	569	1	0	0	0	0	1	0	0	0	5760	768	27	1	648	1	FBXL18	7	5540380	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3067509	5540380	153598283	486	50442										
CYTH3	0	genome.wustl.edu	37	chr7	6204474	6204474	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggagcagcagcttgcaccGcagggcgactgcctccctgc	13	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	6204474	6204474	G	A	SNP	CYTH3	ENST00000465320	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYTH3	HGNC	ENSG00000008256	121	0	0	76	34	30.91	-	-	-	A	6204474	G	A	6204474	1	1	569	0	1	0	0	0	0	0	0	0	4236	1102	38	1		1	CYTH3	7	6204474	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	664094	6204474	152934189	487	50443										
PHF14	0	genome.wustl.edu	37	chr7	11022504	11022504	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgaatgacatggatgactaTgacagtgaggatgacaatga	12	5	0	7			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	11022504	11022504	T	C	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	silent	c.618	p.Y206	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	411	0	0	250	165	39.76	-	-	-	C	11022504	T	C	11022504	2	2	569	1	0	0	0	0	0	0	0	1	11899	1471	51	5		5	PHF14	7	11022504	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4818030	11022504	148116159	488	50444										
PHF14	0	genome.wustl.edu	37	chr7	11075296	11075296	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatccattctttgcttattgTaagcaacatgcagataggtt	8	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	11075296	11075296	T	C	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	silent	c.1485	p.C495	1.000	smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	264	0	0	207	148	41.69	-	-	-	C	11075296	T	C	11075296	2	2	569	1	0	0	0	0	0	0	0	1	11899	1644	57	5		5	PHF14	7	11075296	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	52792	11075296	148063367	489	50445										
THSD7A	0	genome.wustl.edu	37	chr7	11418873	11418873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctgttagaagacatgactTcagtgtacccttcttcacaa	7	10	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	11418873	11418873	T	C	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.4625	p.E1542G	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	285	0	0	176	105	37.23	-	-	-	C	11418873	T	C	11418873	3	2	569	1	0	0	0	0	1	0	0	0	15974	1783	62	5	360	5	THSD7A	7	11418873	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	343577	11418873	147719790	490	50446										
THSD7A	0	genome.wustl.edu	37	chr7	11501712	11501712	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgtgcagtctcggcccccGttggctggcagctgaatgat	13	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	11501712	11501712	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.2427	p.N809	0.701	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	240	0	0	154	87	35.95	-	-	-	A	11501712	G	A	11501712	2	1	569	1	0	0	0	0	0	0	0	1	15974	1136	40	1		1	THSD7A	7	11501712	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	82839	11501712	147636951	491	50447										
MEOX2	0	genome.wustl.edu	37	chr7	15652091	15652091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtcccctgtttgctggaggGtggctgcaccaattcccgac	12	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	15652091	15652091	G	A	SNP	MEOX2	ENST00000262041	human	ensembl	69_37n	-1	known	missense	c.836	p.T279I	0.993	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	319	1	0.31	203	143	41.33	-	-	-	A	15652091	G	A	15652091	3	1	569	1	0	0	0	0	1	0	0	0	9545	1261	44	4	82	4	MEOX2	7	15652091	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4150379	15652091	143486572	492	50448										
TMEM196	0	genome.wustl.edu	37	chr7	19812245	19812245	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgaccgcccccacggccacGctggacacccccagccctat	8	22	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	19812245	19812245	G	A	SNP	TMEM196	ENST00000405764	human	ensembl	69_37n	-1	known	silent	c.75	p.S25	1.000	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452	44	0	0	27	28	50	-	-	-	A	19812245	G	A	19812245	2	1	569	1	0	0	0	0	0	0	0	1	16213	1078	38	1		1	TMEM196	7	19812245	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4160154	19812245	139326418	493	50449										
DNAH11	0	genome.wustl.edu	37	chr7	21840868	21840868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaaccatcaaattagctaaCagacttgtcaaggaacttga	6	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	21840868	21840868	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.10161	p.N3387	0.983	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	277	0	0	174	88	33.59	-	-	-	T	21840868	C	T	21840868	2	4	569	1	0	0	0	0	0	0	0	1	4635	477	17	4		4	DNAH11	7	21840868	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2028623	21840868	137297795	494	50450										
HOXA5	0	genome.wustl.edu	37	chr7	27182903	27182903	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggctgtcgctgccgggcgaGggggccacggcggagcaggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	27182903	27182903	G	-	DEL	HOXA5	ENST00000222726	human	ensembl	69_37n	-1	known	frame_shift_del	c.324	p.S109fs	0.612	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004	36	0	0	22	12	35.29	-	-	-	-	27182903	G	-	27182903	7	5	569	1	0	1	0	1	0	0	0	0	7346	987	35	0	496	0	HOXA5	7	27182903	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	5342035	27182903	131955760	495	50451										
PLEKHA8	0	genome.wustl.edu	37	chr7	30092435	30092435	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atatttgaaatctgcagagaTagactgcagcatatcaagtg	9	6	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	30092435	30092435	T	C	SNP	PLEKHA8	ENST00000449726	human	ensembl	69_37n	1	known	missense	c.749	p.I250T	0.115	NULL	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086	119	0	0	85	55	39.29	-	-	-	C	30092435	T	C	30092435	3	2	569	1	0	0	0	0	1	0	0	0	12136	1406	49	5	775	5	PLEKHA8	7	30092435	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2909532	30092435	129046228	496	50452										
GHRHR	0	genome.wustl.edu	37	chr7	31016142	31016143	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctggcctgggcatccgcctINSccccctggagctgggactgg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	31016142	31016143	-	C	INS	GHRHR	ENST00000326139	human	ensembl	69_37n	1	known	frame_shift_ins	c.1073_1074	p.L360fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128	146	0	0	95	44	31.65	-	-	-	C	31016143	-	C	31016142	7	5	569	1	0	1	1	0	0	0	0	0	6425	1551	54	0	1155	0	GHRHR	7	31016142	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	923707	31016142	128122521	497	50453										
DPY19L1	0	genome.wustl.edu	37	chr7	34977706	34977706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgctttccgactatacaTtgagtatactatttttgttc	7	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	34977706	34977706	T	C	SNP	DPY19L1	ENST00000310974	human	ensembl	69_37n	-1	known	missense	c.1771	p.M591V	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852	345	0	0	198	114	36.54	-	-	-	C	34977706	T	C	34977706	3	2	569	1	0	0	0	0	1	0	0	0	4775	1493	52	5	264	5	DPY19L1	7	34977706	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3961564	34977706	124160957	498	50454										
CDK13	0	genome.wustl.edu	37	chr7	40117689	40117689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatgaaaccaaagaagcaaTatcgtcgaaagttaagagaa	8	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	40117689	40117689	T	C	SNP	CDK13	ENST00000181839	human	ensembl	69_37n	1	known	missense	c.2866	p.Y956H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	452	0	0	309	167	35.08	-	-	-	C	40117689	T	C	40117689	3	2	569	1	0	0	0	0	1	0	0	0	3158	1406	49	5	2904	5	CDK13	7	40117689	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5139983	40117689	119020974	499	50455										
TMED4	0	genome.wustl.edu	37	chr7	44619119	44619119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagaagctcttgaggtgacGcatctgccagatgccagtga	12	9	2	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	44619119	44619119	G	A	SNP	TMED4	ENST00000457408	human	ensembl	69_37n	-1	known	missense	c.643	p.R215C	1.000	pfam_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED4	HGNC	ENSG00000158604	118	0	0	75	46	38.02	-	-	-	A	44619119	G	A	44619119	3	1	569	1	0	0	0	0	1	0	0	0	16101	1087	38	1	44	1	TMED4	7	44619119	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4501430	44619119	114519544	500	50456										
HUS1	0	genome.wustl.edu	37	chr7	48016405	48016405	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttatggggatgtcatgggtCacaatgcggctactgcttga	13	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	48016405	48016405	C	T	SNP	HUS1	ENST00000442024	human	ensembl	69_37n	-1	known	missense	c.148	p.D50N	1.000	pfam_Hus1	pfam_Hus1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUS1	HGNC	ENSG00000136273	208	0	0	169	104	38.1	-	-	-	T	48016405	C	T	48016405	3	4	569	1	0	0	0	0	1	0	0	0	7513	813	29	2	475	2	HUS1	7	48016405	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3397286	48016405	111122258	501	50457										
UPP1	0	genome.wustl.edu	37	chr7	48142985	48142985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctccaacgtcactatcatccGcattggcacttctggtggga	9	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	48142985	48142985	G	A	SNP	UPP1	ENST00000331803	human	ensembl	69_37n	1	known	missense	c.413	p.R138H	1.000	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP1	HGNC	ENSG00000183696	330	1	0.3	222	124	35.84	-	-	-	A	48142985	G	A	48142985	3	1	569	1	0	0	0	0	1	0	0	0	17109	1087	38	1	427	1	UPP1	7	48142985	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	126580	48142985	110995678	502	50458										
ABCA13	0	genome.wustl.edu	37	chr7	48313381	48313381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tacctcacagaggatgttacGtattctagacacgttaaatt	7	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	48313381	48313381	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.4118	p.R1373H	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	136	1	0.73	61	45	42.45	-	-	-	A	48313381	G	A	48313381	3	1	569	1	0	0	0	0	1	0	0	0	31	1145	40	1	4013	1	ABCA13	7	48313381	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	170396	48313381	110825282	503	50459										
ABCA13	0	genome.wustl.edu	37	chr7	48626866	48626866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccctggccctggtggggaaAcctgacattcttttattggt	12	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	48626866	48626866	A	G	SNP	ABCA13	ENST00000453246	human	ensembl	69_37n	1	known	missense	c.3418	p.T1140A	0.366	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA13	HGNC	ENSG00000179869	84	0	0	55	40	42.11	-	-	-	G	48626866	A	G	48626866	3	3	569	1	0	0	0	0	1	0	0	0	31	40	2	5	14677	5	ABCA13	7	48626866	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	313485	48626866	110511797	504	50460										
BAZ1B	0	genome.wustl.edu	37	chr7	72907202	72907202	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagcccatttcctttctccTttttttaatgaagtaggaag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	72907202	72907202	T	-	DEL	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	frame_shift_del	c.621	p.G208fs	0.998	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	590	0	0	428	213	32.87	-	-	-	-	72907202	T	-	72907202	7	5	569	1	0	1	0	1	0	0	0	0	1334	1606	56	0	3890	0	BAZ1B	7	72907202	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	24280336	72907202	86231461	505	50461										
CLDN4	0	genome.wustl.edu	37	chr7	73245959	73245959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcctggacggcccacaacaTcatccaagacttctacaatc	6	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	73245959	73245959	T	C	SNP	CLDN4	ENST00000340958	human	ensembl	69_37n	1	known	missense	c.428	p.I143T	0.998	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143	148	1	0.67	102	48	32	-	-	-	C	73245959	T	C	73245959	3	2	569	1	0	0	0	0	1	0	0	0	3517	1435	50	5	430	5	CLDN4	7	73245959	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	338757	73245959	85892704	506	50462										
ELN	0	genome.wustl.edu	37	chr7	73477671	73477672	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgccgccgctgccgcagccINSaaagctgctgccaaagccgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	73477671	73477672	-	A	INS	ELN	ENST00000358929	human	ensembl	69_37n	1	known	frame_shift_ins	c.2094_2095	p.A699fs	1.000:1.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	51	0	0	37	19	33.93	-	-	-	A	73477672	-	A	73477671	7	5	569	1	0	1	1	0	0	0	0	0	5108	581	21	0	2015	0	ELN	7	73477671	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	231712	73477671	85660992	507	50463										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74212596	74212596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccctcctggtctatcttgcGttttcccacttttgacagag	8	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	74212596	74212596	G	A	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	missense	c.1255	p.R419C	0.967	superfamily_GTF2I	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	161	0	0	95	50	34.48	-	-	-	A	74212596	G	A	74212596	3	1	569	1	0	0	0	0	1	0	0	0	6920	1145	40	1	1598	1	GTF2IRD2	7	74212596	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	734925	74212596	84926067	508	50464										
UPK3B	0	genome.wustl.edu	37	chr7	76144472	76144472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagagaggccgccacactgcCggtgggctgcaagcctggcc	15	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	76144472	76144472	C	T	SNP	UPK3B	ENST00000334348	human	ensembl	69_37n	1	known	missense	c.782	p.P261L	0.968	NULL	NULL	-	no_errors	UPK3B	HGNC	ENSG00000243566	19	0	0	19	9	32.14	-	-	-	T	76144472	C	T	76144472	3	4	569	1	0	0	0	0	1	0	0	0	17108	652	23	1	965	1	UPK3B	7	76144472	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1931876	76144472	82994191	509	50465										
SEMA3E	0	genome.wustl.edu	37	chr7	82997142	82997142	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagatgctactctgagcaggAcaaggcatcctgtgatgcct	12	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	82997142	82997142	A	G	SNP	SEMA3E	ENST00000307792	human	ensembl	69_37n	-1	known	silent	c.2088	p.C696	0.948	NULL	pfam_Semaphorin/CD100_Ag,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3E	HGNC	ENSG00000170381	298	0	0	166	120	41.96	-	-	-	G	82997142	A	G	82997142	2	3	569	1	0	0	0	0	0	0	0	1	14116	273	10	5		5	SEMA3E	7	82997142	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6852670	82997142	76141521	510	50466										
GRM3	0	genome.wustl.edu	37	chr7	86415801	86415801	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagggatcgaggccttcgaGcaggaagcccgcctgcgcaa	14	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	86415801	86415801	G	A	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	silent	c.693	p.E231	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	50	0	0	28	20	41.67	-	-	-	A	86415801	G	A	86415801	2	1	569	1	0	0	0	0	0	0	0	1	6849	962	34	4		4	GRM3	7	86415801	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3418659	86415801	72722862	511	50467										
KIAA1324L	0	genome.wustl.edu	37	chr7	86569340	86569340	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaataccttcaattgtgataTtttttaccagcacaggcttg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	86569340	86569340	T	-	DEL	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	frame_shift_del	c.833	p.N278fs	1.000	superfamily_Growth_fac_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	251	0	0	184	106	36.3	-	-	-	-	86569340	T	-	86569340	7	5	569	1	0	1	0	1	0	0	0	0	8276	1493	52	0	2324	0	KIAA1324L	7	86569340	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	153539	86569340	72569323	512	50468										
ABCB4	0	genome.wustl.edu	37	chr7	87051504	87051504	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaaagagaatatgttgcacTtctgctgcttcactgcatca	7	10	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	87051504	87051504	T	C	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.2249	p.K750R	0.985	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	90	0	0	74	38	33.93	-	-	-	C	87051504	T	C	87051504	3	2	569	1	0	0	0	0	1	0	0	0	43	1609	56	5	1655	5	ABCB4	7	87051504	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	482164	87051504	72087159	513	50469										
C7orf63	0	genome.wustl.edu	37	chr7	89929202	89929202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaaccaaaaaaaattctgtAatctaatacttggaataatg	5	5	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	89929202	89929202	A	G	SNP	C7orf63	ENST00000389297	human	ensembl	69_37n	1	known	missense	c.1879	p.N627D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792	101	1	0.98	75	65	46.43	-	-	-	G	89929202	A	G	89929202	3	3	569	1	0	0	0	0	1	0	0	0	2432	362	13	5	1945	5	C7orf63	7	89929202	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2877698	89929202	69209461	514	50470										
PEX1	0	genome.wustl.edu	37	chr7	92129118	92129118	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaacagtattcctgttcttTgtcgtatgggcaagtttgca	9	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	92129118	92129118	T	C	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.2618	p.Q873R	1.000	smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	246	0	0	177	97	35.4	-	-	-	C	92129118	T	C	92129118	3	2	569	1	0	0	0	0	1	0	0	0	11809	1812	63	5	1269	5	PEX1	7	92129118	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2199916	92129118	67009545	515	50471										
TECPR1	0	genome.wustl.edu	37	chr7	97851805	97851805	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agatggaggcgaagggctggTcggtgccaacgtgcagccag	18	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	97851805	97851805	T	C	SNP	TECPR1	ENST00000379795	human	ensembl	69_37n	-1	known	missense	c.2963	p.D988G	1.000	superfamily_Reg_csome_cond/b-lactamase_inh,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356	41	0	0	20	13	39.39	-	-	-	C	97851805	T	C	97851805	3	2	569	1	0	0	0	0	1	0	0	0	15838	1667	58	5	560	5	TECPR1	7	97851805	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5722687	97851805	61286858	516	50472										
ZNF394	0	genome.wustl.edu	37	chr7	99097511	99097511	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccacctcctggtaacgcagcTgcctaaagtgcagtcgagaa	10	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	99097511	99097511	T	G	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.206	p.Q69P	0.995	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	53	0	0	38	23	37.7	-	-	-	G	99097511	T	G	99097511	3	3	569	1	0	0	0	0	1	0	0	0	17976	1580	55	5	1491	5	ZNF394	7	99097511	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1245706	99097511	60041152	517	50473										
SPDYE3	0	genome.wustl.edu	37	chr7	99912208	99912208	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccttggctgcaaaaggaagAgggagtgtttggatgaatct	14	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	99912208	99912208	A	C	SNP	SPDYE3	ENST00000332397	human	ensembl	69_37n	1	known	silent	c.1036	p.R346	0.036	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300	172	0	0	44	127	73.84	-	-	-	C	99912208	A	C	99912208	2	2	569	1	0	0	0	0	0	0	0	1	15123	295	11	5		5	SPDYE3	7	99912208	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	814697	99912208	59226455	518	50474										
AGFG2	0	genome.wustl.edu	37	chr7	100150976	100150976	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attctttctcaaaggtatgtCcccccagaccaagtcaaggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	100150976	100150976	C	-	DEL	AGFG2	ENST00000300176	human	ensembl	69_37n	1	known	frame_shift_del	c.438	p.P148fs	0.999	superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351	293	0	0	164	96	35.82	-	-	-	-	100150976	C	-	100150976	7	5	569	1	0	1	0	1	0	0	0	0	381	842	30	0	452	0	AGFG2	7	100150976	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	238768	100150976	58987687	519	50475										
FBXL13	0	genome.wustl.edu	37	chr7	102462840	102462840	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atagaggtacctgcaattggTgtcttgggaagtccctcctt	11	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	102462840	102462840	T	C	SNP	FBXL13	ENST00000448002	human	ensembl	69_37n	-1	known	silent	c.2037	p.T679	0.000	NULL	superfamily_F-box_dom_cyclin-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL13	HGNC	ENSG00000161040	13	0	0	5	5	50	-	-	-	C	102462840	T	C	102462840	2	2	569	1	0	0	0	0	0	0	0	1	5755	1711	59	5		5	FBXL13	7	102462840	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2311864	102462840	56675823	520	50476										
MLL5	0	genome.wustl.edu	37	chr7	104730706	104730706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttctccactgagactatcaGtatcaaataatcaggtactg	6	9	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	104730706	104730706	G	A	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.1609	p.V537I	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	134	1	0.74	87	58	40	-	-	-	A	104730706	G	A	104730706	3	1	569	1	0	0	0	0	1	0	0	0	9695	1029	36	4	1655	4	MLL5	7	104730706	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2267866	104730706	54407957	521	50477										
SRPK2	0	genome.wustl.edu	37	chr7	104801039	104801039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaggagatggtggccaagtActtcgaagaccatgcagaca	13	8	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	104801039	104801039	A	G	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	missense	c.536	p.V179A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	359	0	0	250	108	30.17	-	-	-	G	104801039	A	G	104801039	3	3	569	1	0	0	0	0	1	0	0	0	15251	391	14	5	1603	5	SRPK2	7	104801039	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	70333	104801039	54337624	522	50478										
PIK3CG	0	genome.wustl.edu	37	chr7	106509620	106509620	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcagcccacccctgacccGgaaggggaccgggttcgagc	13	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	106509620	106509620	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	silent	c.1614	p.P538	0.001	superfamily_ARM-type_fold	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	242	2	0.82	171	107	38.49	-	-	-	A	106509620	G	A	106509620	2	1	569	1	0	0	0	0	0	0	0	1	11990	1103	39	1		1	PIK3CG	7	106509620	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1708581	106509620	52629043	523	50479										
HBP1	0	genome.wustl.edu	37	chr7	106840642	106840642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggtgacaggtggaagaaaAtgaagaatgaagagagaaga	15	1	0	8			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	106840642	106840642	A	G	SNP	HBP1	ENST00000222574	human	ensembl	69_37n	1	known	missense	c.1423	p.M475V	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Ataxin-1_HBP1,pfam_HMG_superfamily,superfamily_Ataxin-1_HBP1,superfamily_HMG_superfamily,smart_Ataxin_AXH_dom,smart_HMG_superfamily,pfscan_Ataxin-1_HBP1,pfscan_HMG_superfamily	-	no_errors	HBP1	HGNC	ENSG00000105856	471	0	0	341	157	31.53	-	-	-	G	106840642	A	G	106840642	3	3	569	1	0	0	0	0	1	0	0	0	7036	101	4	5	1457	5	HBP1	7	106840642	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	331022	106840642	52298021	524	50480										
DOCK4	0	genome.wustl.edu	37	chr7	111423966	111423966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagtagcaattaatgaaacGccactttcccgccatgtttc	6	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	111423966	111423966	G	A	SNP	DOCK4	ENST00000423057	human	ensembl	69_37n	-1	putative	missense	c.1826	p.A609V	0.986	NULL	pfam_DOCK,superfamily_Rho_GTPase_activation_prot	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK4	HGNC	ENSG00000128512	240	0	0	176	93	33.82	-	-	-	A	111423966	G	A	111423966	3	1	569	1	0	0	0	0	1	0	0	0	4724	1074	38	1	2536	1	DOCK4	7	111423966	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4583324	111423966	47714697	525	50481										
CAV1	0	genome.wustl.edu	37	chr7	116166683	116166683	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagcaagtgtacgacgcgcaCaccaaggagatcgacctggt	12	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	116166683	116166683	C	T	SNP	CAV1	ENST00000341049	human	ensembl	69_37n	1	known	silent	c.135	p.H45	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974	180	0	0	145	80	35.56	-	-	-	T	116166683	C	T	116166683	2	4	569	1	0	0	0	0	0	0	0	1	2718	477	17	4		4	CAV1	7	116166683	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4742717	116166683	42971980	526	50482										
ST7	0	genome.wustl.edu	37	chr7	116776248	116776248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggctgttaccgacgctctcAgcagctacaacatcatggat	9	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	116776248	116776248	A	G	SNP	ST7	ENST00000265437	human	ensembl	69_37n	1	known	missense	c.824	p.Q275R	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866	212	0	0	138	86	38.39	-	-	-	G	116776248	A	G	116776248	3	3	569	1	0	0	0	0	1	0	0	0	15320	188	7	5	854	5	ST7	7	116776248	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	609565	116776248	42362415	527	50483										
CFTR	0	genome.wustl.edu	37	chr7	117243699	117243699	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catttacgtgggagtagccgAcactttgcttgctatgggat	12	8	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	117243699	117243699	A	G	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.2771	p.D924G	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	460	1	0.22	338	186	35.43	-	-	-	G	117243699	A	G	117243699	3	3	569	1	0	0	0	0	1	0	0	0	3323	275	10	5	2837	5	CFTR	7	117243699	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	467451	117243699	41894964	528	50484										
FEZF1	0	genome.wustl.edu	37	chr7	121942133	121942133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggaggcagcgtcatcggcGgctgctgcggtagcgggggc	21	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	121942133	121942133	G	A	SNP	FEZF1	ENST00000442488	human	ensembl	69_37n	-1	known	missense	c.1346	p.P449L	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF1	HGNC	ENSG00000128610	44	0	0	29	16	35.56	-	-	-	A	121942133	G	A	121942133	3	1	569	1	0	0	0	0	1	0	0	0	5871	1116	39	1	85	1	FEZF1	7	121942133	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4698434	121942133	37196530	529	50485										
GRM8	0	genome.wustl.edu	37	chr7	126409995	126409995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attcgtggacaaaggccaatGtatccagggcagagatcttt	11	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	126409995	126409995	G	A	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	silent	c.1281	p.Y427	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	218	1	0.46	164	106	39.26	-	-	-	A	126409995	G	A	126409995	2	1	569	1	0	0	0	0	0	0	0	1	6854	1372	48	4		4	GRM8	7	126409995	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4467862	126409995	32728668	530	50486										
ZNF800	0	genome.wustl.edu	37	chr7	127013702	127013702	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttagaacaaaatcaataggcTtttttatagctctgatctct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	127013702	127013702	T	-	DEL	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	frame_shift_del	c.1688	p.K563fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	211	0	0	162	96	36.92	-	-	-	-	127013702	T	-	127013702	7	5	569	1	0	1	0	1	0	0	0	0	18262	1609	56	0	314	0	ZNF800	7	127013702	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	603707	127013702	32124961	531	50487										
LRRC4	0	genome.wustl.edu	37	chr7	127670590	127670590	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggctgaggcggcagcagcgAtggctgcacacagaatccac	14	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	127670590	127670590	A	G	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	missense	c.104	p.I35T	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	123	0	0	77	37	32.46	-	-	-	G	127670590	A	G	127670590	3	3	569	1	0	0	0	0	1	0	0	0	9063	333	12	5	1861	5	LRRC4	7	127670590	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	656888	127670590	31468073	532	50488										
OPN1SW	0	genome.wustl.edu	37	chr7	128414670	128414670	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcggtatttggtgcccacgGtgtaccagtcagggccacag	14	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	128414670	128414670	G	T	SNP	OPN1SW	ENST00000249389	human	ensembl	69_37n	-1	known	missense	c.569	p.T190N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_blue	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_blue,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617	220	0	0	191	83	30.29	-	-	-	T	128414670	G	T	128414670	3	4	569	1	0	0	0	0	1	0	0	0	10953	1261	44	4	489	4	OPN1SW	7	128414670	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	744080	128414670	30723993	533	50489										
TNPO3	0	genome.wustl.edu	37	chr7	128645119	128645119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tattgttagccatgaagttaCtgtccaaaactcccaagtta	6	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	128645119	128645119	C	T	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.647	p.S216N	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	238	0	0	170	82	32.54	-	-	-	T	128645119	C	T	128645119	3	4	569	1	0	0	0	0	1	0	0	0	16432	565	20	4	2196	4	TNPO3	7	128645119	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	230449	128645119	30493544	534	50490										
C7orf49	0	genome.wustl.edu	37	chr7	134851534	134851534	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgctgctcccagaacttgtGtgaggcgacacggagcaggg	15	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	134851534	134851534	G	A	SNP	C7orf49	ENST00000393114	human	ensembl	69_37n	-1	known	silent	c.303	p.H101	0.001	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783	111	0	0	74	60	44.78	-	-	-	A	134851534	G	A	134851534	2	1	569	1	0	0	0	0	0	0	0	1	2421	1368	48	4		4	C7orf49	7	134851534	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6206415	134851534	24287129	535	50491										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138764573	138764573	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaaacacagtctttctccTggcgccttggtcattcgtcc	8	13	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	138764573	138764573	T	G	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	silent	c.1114	p.R372	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	215	0	0	134	84	38.36	-	-	-	G	138764573	T	G	138764573	2	3	569	1	0	0	0	0	0	0	0	1	17671	1579	55	5		5	ZC3HAV1	7	138764573	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3913039	138764573	20374090	536	50492										
OR2F1	0	genome.wustl.edu	37	chr7	143657730	143657730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtcctacatccagatcatcTccaccatcctaaagatccag	4	15	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	143657730	143657730	T	C	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	missense	c.667	p.S223P	0.575	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	739	1	0.13	521	263	33.46	-	-	-	C	143657730	T	C	143657730	3	2	569	1	0	0	0	0	1	0	0	0	11069	1551	54	5	669	5	OR2F1	7	143657730	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4893157	143657730	15480933	537	50493										
OR2A1	0	genome.wustl.edu	37	chr7	144015332	144015332	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgttctatatcttcaccctgCtggggaacggggccatcctg	11	12	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	144015332	144015332	C	T	SNP	OR2A1	ENST00000408951	human	ensembl	69_37n	1	known	silent	c.115	p.L39	0.009	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2A1	HGNC	ENSG00000221970	72	0	0	62	19	23.46	-	-	-	T	144015332	C	T	144015332	2	4	569	1	0	0	0	0	0	0	0	1	11047	796	28	4		4	OR2A1	7	144015332	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	357602	144015332	15123331	538	50494										
ZNF786	0	genome.wustl.edu	37	chr7	148767971	148767971	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccttcatgtcggccttcacGcgatagcgcttgtcgcactc	10	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	148767971	148767971	G	A	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	silent	c.1893	p.R631	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	63	0	0	47	30	38.96	-	-	-	A	148767971	G	A	148767971	2	1	569	1	0	0	0	0	0	0	0	1	18251	1074	38	1		1	ZNF786	7	148767971	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4752639	148767971	10370692	539	50495										
REPIN1	0	genome.wustl.edu	37	chr7	150069011	150069011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggtgaccgccccccggccCggtggagatgccgtcgaccg	16	17	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	150069011	150069011	C	T	SNP	REPIN1	ENST00000489432	human	ensembl	69_37n	1	known	silent	c.852	p.P284	0.623	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022	12	0	0	6	4	40	-	-	-	T	150069011	C	T	150069011	2	4	569	1	0	0	0	0	0	0	0	1	13310	639	23	1		1	REPIN1	7	150069011	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1301040	150069011	9069652	540	50496										
SLC4A2	0	genome.wustl.edu	37	chr7	150772561	150772561	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attcaggaagtcaaggagcaGcgggtgacggggctgctggt	18	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	150772561	150772561	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	silent	c.3267	p.Q1089	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	238	0	0	141	99	41.25	-	-	-	A	150772561	G	A	150772561	2	1	569	1	0	0	0	0	0	0	0	1	14743	962	34	4		4	SLC4A2	7	150772561	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	703550	150772561	8366102	541	50497										
MNX1	0	genome.wustl.edu	37	chr7	156799232	156799232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgcttgggccgcgacaggtActtgttgagcttgaactggt	15	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	156799232	156799232	A	G	SNP	MNX1	ENST00000252971	human	ensembl	69_37n	-1	known	missense	c.793	p.Y265H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	MNX1	HGNC	ENSG00000130675	52	0	0	24	24	50	-	-	-	G	156799232	A	G	156799232	3	3	569	1	0	0	0	0	1	0	0	0	9751	391	14	5	420	5	MNX1	7	156799232	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6026671	156799232	2339431	542	50498										
UBE3C	0	genome.wustl.edu	37	chr7	157046647	157046647	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccttacgttttgtattcccaGgtagttgaactaaaattcgg	8	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	7	157046647	157046647	G	T	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	splice_site	c.2695-1	e20-1	1.000	-	-	-	no_errors	UBE3C	HGNC	ENSG00000009335	69	0	0	46	31	40.26	-	-	-	T	157046647	G	T	157046647	5	4	569	1	0	0	0	0	0	0	1	0	16978	1014	35	4	2772	4	UBE3C	7	157046647	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	247415	157046647	2092016	543	50499										
RP1L1	0	genome.wustl.edu	37	chr8	10465065	10465065	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccccttctgcctctggggcCtctacaccttctaactctgg	7	17	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	10465065	10465065	C	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.6543	p.E2181D	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	722	2	0.28	356	216	37.63	-	-	-	A	10465065	C	A	10465065	3	1	569	1	0	0	0	0	1	0	0	0	13619	680	24	4	663	4	RP1L1	8	10465065	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		10465065	135898957	544	50500										
C8orf74	0	genome.wustl.edu	37	chr8	10555231	10555231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accacaccttcatccgccacTacaaactctaccagtatgtc	3	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	10555231	10555231	T	C	SNP	C8orf74	ENST00000304519	human	ensembl	69_37n	1	known	missense	c.364	p.Y122H	0.996	NULL	NULL	-	no_errors	C8orf74	HGNC	ENSG00000171060	251	0	0	156	86	35.39	-	-	-	C	10555231	T	C	10555231	3	2	569	1	0	0	0	0	1	0	0	0	2461	1522	53	5	374	5	C8orf74	8	10555231	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	90166	10555231	135808791	545	50501										
PIWIL2	0	genome.wustl.edu	37	chr8	22137059	22137059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggccatgtatttggaaagCcagaggaaccaagcacacag	12	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	22137059	22137059	C	T	SNP	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	missense	c.160	p.P54S	0.383	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	142	0	0	142	58	28.71	-	-	-	T	22137059	C	T	22137059	3	4	569	1	0	0	0	0	1	0	0	0	12032	739	26	4	162	4	PIWIL2	8	22137059	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	11581828	22137059	124226963	546	50502										
PEBP4	0	genome.wustl.edu	37	chr8	22675167	22675167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taccttgatatctgttaccaGccaatgtctccagaatctct	5	12	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	22675167	22675167	G	A	SNP	PEBP4	ENST00000256404	human	ensembl	69_37n	-1	known	silent	c.340	p.L114	1.000	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	PEBP4	HGNC	ENSG00000134020	275	2	0.72	156	100	38.91	-	-	-	A	22675167	G	A	22675167	2	1	569	1	0	0	0	0	0	0	0	1	11787	962	34	4		4	PEBP4	8	22675167	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	538108	22675167	123688855	547	50503										
STC1	0	genome.wustl.edu	37	chr8	23708938	23708938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtagcactcttcctgcaccTcagcaatcatcctttggaaa	6	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	23708938	23708938	T	C	SNP	STC1	ENST00000290271	human	ensembl	69_37n	-1	known	missense	c.368	p.E123G	1.000	pfam_Stanniocalcin	pfam_Stanniocalcin	-	no_errors	STC1	HGNC	ENSG00000159167	330	1	0.3	241	126	34.33	-	-	-	C	23708938	T	C	23708938	3	2	569	1	0	0	0	0	1	0	0	0	15366	1551	54	5	383	5	STC1	8	23708938	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1033771	23708938	122655084	548	50504										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24262916	24262916	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacccataatggtctttcacTtgtcattctactttctatat	3	11	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	24262916	24262916	T	G	SNP	ADAMDEC1	ENST00000519953	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	125	0	0	77	42	35.29	-	-	-	G	24262916	T	G	24262916	1	3	569	0	1	0	0	0	0	0	0	0	254	1624	56	5		5	ADAMDEC1	8	24262916	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	553978	24262916	122101106	549	50505										
PTK2B	0	genome.wustl.edu	37	chr8	27296898	27296898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgacgcttcacgacagccaGtgacgtctggatgttcggtg	13	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	27296898	27296898	G	T	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	missense	c.1817	p.S606I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	131	0	0	84	64	43.24	-	-	-	T	27296898	G	T	27296898	3	4	569	1	0	0	0	0	1	0	0	0	12844	1029	36	4	1891	4	PTK2B	8	27296898	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3033982	27296898	119067124	550	50506										
SCARA5	0	genome.wustl.edu	37	chr8	27767201	27767201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgaagtccaggcaatccagGgatgccaggcctgccttcct	11	14	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	27767201	27767201	G	T	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	missense	c.976	p.P326T	0.938	pfam_Collagen	pfam_Srcr_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SCARA5	HGNC	ENSG00000168079	173	0	0	120	70	36.84	-	-	-	T	27767201	G	T	27767201	3	4	569	1	0	0	0	0	1	0	0	0	13967	1232	43	4	531	4	SCARA5	8	27767201	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	470303	27767201	118596821	551	50507										
ZNF395	0	genome.wustl.edu	37	chr8	28218426	28218426	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcccaggctgaaaggccacCtgctgaaggcccgaggtgct	14	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	28218426	28218426	C	T	SNP	ZNF395	ENST00000344423	human	ensembl	69_37n	-1	known	silent	c.216	p.Q72	0.990	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	43	0	0	21	14	40	-	-	-	T	28218426	C	T	28218426	2	4	569	1	0	0	0	0	0	0	0	1	17977	680	24	4		4	ZNF395	8	28218426	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	451225	28218426	118145596	552	50508										
WRN	0	genome.wustl.edu	37	chr8	30977830	30977830	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgccaagtcattcattacggTgctcctaaggacatggaatc	9	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	30977830	30977830	T	C	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	silent	c.2520	p.G840	0.896	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	228	0	0	199	80	28.67	-	-	-	C	30977830	T	C	30977830	2	2	569	1	0	0	0	0	0	0	0	1	17499	1683	59	5		5	WRN	8	30977830	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2759404	30977830	115386192	553	50509										
ERLIN2	0	genome.wustl.edu	37	chr8	37611457	37611457	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctaacccctgaatatctgCagctgatgaagtacaaggcc	9	11	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	37611457	37611457	C	T	SNP	ERLIN2	ENST00000276461	human	ensembl	69_37n	1	known	nonsense	c.844	p.Q282*	1.000	NULL	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	155	0	0	92	71	43.29	-	-	-	T	37611457	C	T	37611457	4	4	569	1	0	0	0	0	0	1	0	0	5270	711	25	4	925	4	ERLIN2	8	37611457	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6633627	37611457	108752565	554	50510										
ADRB3	0	genome.wustl.edu	37	chr8	37823790	37823790	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggtcatggtctggagtctCggagtccaggcgatggccac	15	10	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	37823790	37823790	C	T	SNP	ADRB3	ENST00000345060	human	ensembl	69_37n	-1	known	silent	c.198	p.P66	0.970	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Adrgc_rcpt_B3,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt,prints_5HT6_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	ADRB3	HGNC	ENSG00000188778	37	0	0	19	10	34.48	-	-	-	T	37823790	C	T	37823790	2	4	569	1	0	0	0	0	0	0	0	1	342	871	31	1		1	ADRB3	8	37823790	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	212333	37823790	108540232	555	50511										
SLC20A2	0	genome.wustl.edu	37	chr8	42294888	42294888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggtgtaactgttgtttcggCgcagcagccggtagttgctt	14	8	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	42294888	42294888	C	T	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	missense	c.1142	p.R381H	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	115	0	0	62	43	40.57	-	-	-	T	42294888	C	T	42294888	3	4	569	1	0	0	0	0	1	0	0	0	14528	768	27	1	832	1	SLC20A2	8	42294888	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4471098	42294888	104069134	556	50512										
KIAA0146	0	genome.wustl.edu	37	chr8	48353052	48353052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctcttcaccaaggagactGcaggctacctcaggggccgt	11	13	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	48353052	48353052	G	A	SNP	KIAA0146	ENST00000297423	human	ensembl	69_37n	1	known	missense	c.1045	p.A349T	1.000	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	86	0	0	56	38	40.43	-	-	-	A	48353052	G	A	48353052	3	1	569	1	0	0	0	0	1	0	0	0	8209	1319	46	4	1075	4	KIAA0146	8	48353052	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6058164	48353052	98010970	557	50513										
FAM110B	0	genome.wustl.edu	37	chr8	59058872	59058872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacctctgctgtgcccctgcGcatcctgaacaaggggccag	11	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	59058872	59058872	G	A	SNP	FAM110B	ENST00000361488	human	ensembl	69_37n	1	known	missense	c.83	p.R28H	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122	36	0	0	25	5	16.67	-	-	-	A	59058872	G	A	59058872	3	1	569	1	0	0	0	0	1	0	0	0	5437	1087	38	1	85	1	FAM110B	8	59058872	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	10705820	59058872	87305150	558	50514										
ASPH	0	genome.wustl.edu	37	chr8	62588724	62588726	+	In_Frame_Del	DEL	TTC	TTC	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaccatctgcggtttcgctTtcttcttcttcttcttctag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	62588724	62588726	TTC	-	DEL	ASPH	ENST00000379449	human	ensembl	69_37n	-1	putative	in_frame_del	c.522_520	p.E174in_frame_del	1.000:1.000:1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	323	2	0.62	237	88	26.75	-	-	-	-	62588726	TTC	-	62588724	7	5	569	1	0	1	0	1	0	0	0	0	1057	1838	64	0	2554	0	ASPH	8	62588724	In_Frame_Del	DEL	TTC	TCGA-BH-A18G-01A-11D-A12B-09	3529852	62588724	83775298	559	50515										
ARFGEF1	0	genome.wustl.edu	37	chr8	68137173	68137173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatttgcatctattgatgatAcaggataactcaaagagaat	7	5	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	68137173	68137173	A	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	silent	c.4173	p.C1391	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	225	0	0	158	94	37.3	-	-	-	G	68137173	A	G	68137173	2	3	569	1	0	0	0	0	0	0	0	1	854	389	14	5		5	ARFGEF1	8	68137173	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	5548449	68137173	78226849	560	50516										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885903	88885903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctcgcatggtgatgatgccGtacttggagcctccagcttc	11	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	88885903	88885903	G	A	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	silent	c.297	p.Y99	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	305	0	0	221	102	31.58	-	-	-	A	88885903	G	A	88885903	2	1	569	1	0	0	0	0	0	0	0	1	4304	1140	40	1		1	DCAF4L2	8	88885903	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	20748730	88885903	57478119	561	50517										
NUDCD1	0	genome.wustl.edu	37	chr8	110346160	110346163	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtaacaaggcagcggctcaAgagagagcttgtaaccctcg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	110346160	110346163	AGAG	-	DEL	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	frame_shift_del	c.80_77	p.S26fs	1.000:1.000:1.000:1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	72	0	0	76	25	24.75	-	-	-	-	110346163	AGAG	-	110346160	7	5	569	1	0	1	0	1	0	0	0	0	10795	72	3	0	1746	0	NUDCD1	8	110346160	Frame_Shift_Del	DEL	AGAG	TCGA-BH-A18G-01A-11D-A12B-09	21460257	110346160	36017862	562	50518										
KCNV1	0	genome.wustl.edu	37	chr8	110980363	110980363	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctcctagtacttgctcttTctctgcctttcagtcgcagc	7	14	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	110980363	110980363	T	C	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.1457	p.E486G	1.000	NULL	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	251	2	0.79	193	110	36.3	-	-	-	C	110980363	T	C	110980363	3	2	569	1	0	0	0	0	1	0	0	0	8148	1783	62	5	49	5	KCNV1	8	110980363	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	634203	110980363	35383659	563	50519										
ANXA13	0	genome.wustl.edu	37	chr8	124710747	124710747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacggtccagaagggccaacGctgtcttctcgaagtttcca	11	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	124710747	124710747	G	A	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	missense	c.362	p.A121V	0.989	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	132	0	0	87	51	36.96	-	-	-	A	124710747	G	A	124710747	3	1	569	1	0	0	0	0	1	0	0	0	716	1087	38	1	743	1	ANXA13	8	124710747	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13730384	124710747	21653275	564	50520										
FER1L6	0	genome.wustl.edu	37	chr8	125029876	125029876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttttcttatagtgcctttaTctctgaagcagaaaaaaagc	6	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	125029876	125029876	T	C	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.1931	p.I644T	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	154	0	0	113	66	36.87	-	-	-	C	125029876	T	C	125029876	3	2	569	1	0	0	0	0	1	0	0	0	5861	1435	50	5	1989	5	FER1L6	8	125029876	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	319129	125029876	21334146	565	50521										
MTSS1	0	genome.wustl.edu	37	chr8	125570148	125570149	+	RNA	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaaaaagggggggggaaggINSaaaaaaaattaatataacag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	125570148	125570149	-	A	INS	MTSS1	ENST00000520094	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	MTSS1	HGNC	ENSG00000170873	58	0	0	34	18	34.62	-	-	-	A	125570149	-	A	125570148	6	5	569	0	1	1	1	0	0	0	0	0	10034	1189	41	0		0	MTSS1	8	125570148	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	540272	125570148	20793874	566	50522										
SLC45A4	0	genome.wustl.edu	37	chr8	142229023	142229023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggacaccgtgaagatgatgGcggcaaagaagaagagcacc	14	9	0	6			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	142229023	142229023	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	missense	c.716	p.A239V	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	70	0	0	60	21	25.93	-	-	-	A	142229023	G	A	142229023	3	1	569	1	0	0	0	0	1	0	0	0	14732	1203	42	4	1853	4	SLC45A4	8	142229023	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	16658875	142229023	4134999	567	50523										
RHPN1	0	genome.wustl.edu	37	chr8	144461121	144461121	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcccggcccagcagcgtgcCctggccttcgagaagggcag	15	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	144461121	144461121	C	A	SNP	RHPN1	ENST00000289013	human	ensembl	69_37n	1	known	silent	c.624	p.A208	0.994	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106	56	0	0	32	15	31.91	-	-	-	A	144461121	C	A	144461121	2	1	569	1	0	0	0	0	0	0	0	1	13434	610	22	4		4	RHPN1	8	144461121	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2232098	144461121	1902901	568	50524										
SCRIB	0	genome.wustl.edu	37	chr8	144885935	144885935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccttctggatgcacagttccCgtaggcccgggggtgccggg	16	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	144885935	144885935	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	missense	c.3296	p.R1099Q	1.000	superfamily_PDZ	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	9	0	0	9	5	35.71	-	-	-	T	144885935	C	T	144885935	3	4	569	1	0	0	0	0	1	0	0	0	14025	652	23	1	1731	1	SCRIB	8	144885935	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	424814	144885935	1478087	569	50525										
PLEC	0	genome.wustl.edu	37	chr8	145009185	145009185	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccccccactcacgttggcCctcaccccatcctgcacgtc	7	22	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	145009185	145009185	C	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.1230	p.R410S	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	55	0	0	40	28	41.18	-	-	-	A	145009185	C	A	145009185	3	1	569	1	0	0	0	0	1	0	0	0	12126	622	22	4	12924	4	PLEC	8	145009185	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	123250	145009185	1354837	570	50526										
FBXL6	0	genome.wustl.edu	37	chr8	145580146	145580146	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtccgggagccacccctcGtcccggaggcttgggcagcc	15	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	145580146	145580146	G	A	SNP	FBXL6	ENST00000331890	human	ensembl	69_37n	-1	known	nonsense	c.1039	p.R347*	0.003	NULL	superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL6	HGNC	ENSG00000182325	35	0	0	19	19	48.72	-	-	-	A	145580146	G	A	145580146	4	1	569	1	0	0	0	0	0	1	0	0	5769	1153	40	1	592	1	FBXL6	8	145580146	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	570961	145580146	783876	571	50527										
LRRC24	0	genome.wustl.edu	37	chr8	145748042	145748042	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctagctgtgcgaacgtacaGgggccgtccaagtagtcgtt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	145748042	145748042	G	-	DEL	LRRC24	ENST00000529415	human	ensembl	69_37n	-1	known	frame_shift_del	c.1359	p.C454fs	1.000	NULL	pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC24	HGNC	ENSG00000254402	26	0	0	18	10	35.71	-	-	-	-	145748042	G	-	145748042	7	5	569	1	0	1	0	1	0	0	0	0	9045	987	35	0	186	0	LRRC24	8	145748042	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	167896	145748042	615980	572	50528										
ZNF34	0	genome.wustl.edu	37	chr8	145999360	145999360	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccagtgtgaatcctctggTgcttcatgaggttgggcctc	12	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	145999360	145999360	T	C	SNP	ZNF34	ENST00000343459	human	ensembl	69_37n	-1	known	missense	c.974	p.H325R	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378	119	0	0	86	41	32.28	-	-	-	C	145999360	T	C	145999360	3	2	569	1	0	0	0	0	1	0	0	0	17952	1696	59	5	712	5	ZNF34	8	145999360	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	251318	145999360	364662	573	50529										
ZNF16	0	genome.wustl.edu	37	chr8	146156722	146156722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atctgtacggcttctctcccGtgtggatgatctggtgcttt	11	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	8	146156722	146156722	G	A	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.1451	p.T484M	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	187	0	0	92	49	34.75	-	-	-	A	146156722	G	A	146156722	3	1	569	1	0	0	0	0	1	0	0	0	17834	1145	40	1	601	1	ZNF16	8	146156722	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	157362	146156722	207300	574	50530										
RLN1	0	genome.wustl.edu	37	chr9	5335193	5335194	+	RNA	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctgacagaagcatcagtgINSaaatgtcatcaagactatgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	5335193	5335194	-	A	INS	RLN1	ENST00000487557	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	RLN1	HGNC	ENSG00000107018	101	0	0	56	32	36.36	-	-	-	A	5335194	-	A	5335193	6	5	569	0	1	1	1	0	0	0	0	0	13477	1305	45	0		0	RLN1	9	5335193	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09		5335193	135878238	575	50531										
GLDC	0	genome.wustl.edu	37	chr9	6558604	6558604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atattcccatatttatccacCtccacaggctgaatcttcat	3	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	6558604	6558604	C	A	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.2007	p.E669D	1.000	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	201	0	0	172	89	34.1	-	-	-	A	6558604	C	A	6558604	3	1	569	1	0	0	0	0	1	0	0	0	6485	680	24	4	1091	4	GLDC	9	6558604	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1223411	6558604	134654827	576	50532										
PTPRD	0	genome.wustl.edu	37	chr9	8507409	8507409	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttcagactcaggttctgcTttgaagtttagtggctgccc	11	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	8507409	8507409	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	silent	c.1569	p.K523	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	473	0	0	340	206	37.66	-	-	-	C	8507409	T	C	8507409	2	2	569	1	0	0	0	0	0	0	0	1	12882	1606	56	5		5	PTPRD	9	8507409	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1948805	8507409	132706022	577	50533										
FREM1	0	genome.wustl.edu	37	chr9	14784458	14784458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttggctgaagtttgtaatgGgaactccaggatagtgaaca	12	5	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	14784458	14784458	G	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.4355	p.P1452L	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	273	0	0	190	133	41.18	-	-	-	A	14784458	G	A	14784458	3	1	569	1	0	0	0	0	1	0	0	0	6093	1232	43	4	2293	4	FREM1	9	14784458	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6277049	14784458	126428973	578	50534										
TAF1L	0	genome.wustl.edu	37	chr9	32633699	32633699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgccggattttgatgggccCcatgtgggtgggaaagaagg	17	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	32633699	32633699	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.1879	p.G627R	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	381	0	0	237	148	38.44	-	-	-	T	32633699	C	T	32633699	3	4	569	1	0	0	0	0	1	0	0	0	15615	623	22	4	3605	4	TAF1L	9	32633699	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	17849241	32633699	108579732	579	50535										
PRSS3	0	genome.wustl.edu	37	chr9	33797968	33797968	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcatgctgatcaaactctcCtcacctgccgtcatcaatgc	5	15	6	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	33797968	33797968	C	A	SNP	PRSS3	ENST00000361005	human	ensembl	69_37n	1	known	silent	c.513	p.S171	0.017	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438	627	0	0	412	187	31.17	-	-	-	A	33797968	C	A	33797968	2	1	569	1	0	0	0	0	0	0	0	1	12702	668	24	4		4	PRSS3	9	33797968	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1164269	33797968	107415463	580	50536										
C9orf131	0	genome.wustl.edu	37	chr9	35043030	35043030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggagagcaagccactccagCcccaccccagccatcctgtg	9	18	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	35043030	35043030	C	T	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.404	p.A135V	0.011	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	218	1	0.46	143	75	34.4	-	-	-	T	35043030	C	T	35043030	3	4	569	1	0	0	0	0	1	0	0	0	2482	739	26	4	426	4	C9orf131	9	35043030	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1245062	35043030	106170401	581	50537										
RNF38	0	genome.wustl.edu	37	chr9	36353283	36353283	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtaaaacctcctactggaaGatgttctcctaagagttcca	7	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	36353283	36353283	G	A	SNP	RNF38	ENST00000259605	human	ensembl	69_37n	-1	known	missense	c.955	p.L319F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075	353	0	0	251	157	38.48	-	-	-	A	36353283	G	A	36353283	3	1	569	1	0	0	0	0	1	0	0	0	13576	942	33	2	616	2	RNF38	9	36353283	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1310253	36353283	104860148	582	50538										
CBWD3	0	genome.wustl.edu	37	chr9	70871838	70871838	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaatattatatattttcacgTgcagtggcttctatgttttg	8	5	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	70871838	70871838	T	C	SNP	CBWD3	ENST00000360171	human	ensembl	69_37n	1	known	silent	c.432	p.G144	1.000	pfam_Cbl_biosynth_CobW-like	pfam_Cbl_biosynth_CobW-like,pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD3	HGNC	ENSG00000196873	435	0	0	408	86	17.41	-	-	-	C	70871838	T	C	70871838	2	2	569	1	0	0	0	0	0	0	0	1	2739	1710	59	5		5	CBWD3	9	70871838	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	34518555	70871838	70341593	583	50539										
C9orf135	0	genome.wustl.edu	37	chr9	72459539	72459539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactgggaaccgatgaatccCcagtaagtagttgctattac	10	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	72459539	72459539	C	A	SNP	C9orf135	ENST00000377197	human	ensembl	69_37n	1	known	missense	c.259	p.P87T	0.424	NULL	NULL	-	no_errors	C9orf135	HGNC	ENSG00000204711	109	0	0	76	53	41.09	-	-	-	A	72459539	C	A	72459539	3	1	569	1	0	0	0	0	1	0	0	0	2483	623	22	4	265	4	C9orf135	9	72459539	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1587701	72459539	68753892	584	50540										
ALDH1A1	0	genome.wustl.edu	37	chr9	75542080	75542080	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggttcatgtcttgtatatgtAaaaaaatttccatctgaaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	75542080	75542080	A	-	DEL	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	frame_shift_del	c.456	p.F152fs	0.782	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	135	0	0	109	36	24.83	-	-	-	-	75542080	A	-	75542080	7	5	569	1	0	1	0	1	0	0	0	0	490	359	13	0	1085	0	ALDH1A1	9	75542080	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	3082541	75542080	65671351	585	50541										
VPS13A	0	genome.wustl.edu	37	chr9	79984308	79984308	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttctgaaggtgtagaagcaTttttttatgaaccttaccag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	79984308	79984308	T	-	DEL	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	frame_shift_del	c.8647	p.Y2885fs	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	479	0	0	369	161	30.21	-	-	-	-	79984308	T	-	79984308	7	5	569	1	0	1	0	1	0	0	0	0	17286	1493	52	0	8897	0	VPS13A	9	79984308	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	4442228	79984308	61229123	586	50542										
CEP78	0	genome.wustl.edu	37	chr9	80858512	80858512	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attggtgacctaggtgcatgTgcttttgcagactctctcag	11	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	80858512	80858512	T	C	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	silent	c.738	p.C246	0.429	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	414	0	0	328	165	33.4	-	-	-	C	80858512	T	C	80858512	2	2	569	1	0	0	0	0	0	0	0	1	3291	1702	59	5		5	CEP78	9	80858512	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	874204	80858512	60354919	587	50543										
TLE4	0	genome.wustl.edu	37	chr9	82191129	82191129	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taaccattttaaatgacagtAatactgggacactatgaaaa	6	6	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	82191129	82191129	A	G	SNP	TLE4	ENST00000461758	human	ensembl	69_37n	1	known	missense	c.289	p.N97D	0.001	NULL	pfam_Groucho/TLE_N	-	no_errors	TLE4	HGNC	ENSG00000106829	130	0	0	113	56	33.14	-	-	-	G	82191129	A	G	82191129	3	3	569	1	0	0	0	0	1	0	0	0	16036	377	13	5		5	TLE4	9	82191129	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1332617	82191129	59022302	588	50544										
SEMA4D	0	genome.wustl.edu	37	chr9	92002462	92002462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtctttaacgaactgcagcGtcttgtctggcaaattcaag	10	9	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	92002462	92002462	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	missense	c.1169	p.T390M	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	410	0	0	245	162	39.61	-	-	-	A	92002462	G	A	92002462	3	1	569	1	0	0	0	0	1	0	0	0	14122	1145	40	1	2009	1	SEMA4D	9	92002462	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9811333	92002462	49210969	589	50545										
GADD45G	0	genome.wustl.edu	37	chr9	92220726	92220726	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcgtgggcgatgtgcagcgGctggcggctatcgtgggcgc	20	11	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	92220726	92220726	G	A	SNP	GADD45G	ENST00000252506	human	ensembl	69_37n	1	known	silent	c.300	p.R100	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	GADD45G	HGNC	ENSG00000130222	56	0	0	33	24	42.11	-	-	-	A	92220726	G	A	92220726	2	1	569	1	0	0	0	0	0	0	0	1	6232	1190	42	4		4	GADD45G	9	92220726	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	218264	92220726	48992705	590	50546										
SPTLC1	0	genome.wustl.edu	37	chr9	94843197	94843197	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaagaaaattaaatgaggcGaagtttatacattcttttcc	6	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	94843197	94843197	G	A	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	silent	c.309	p.F103	0.993	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	436	1	0.23	295	138	31.87	-	-	-	A	94843197	G	A	94843197	2	1	569	1	0	0	0	0	0	0	0	1	15214	1049	37	1		1	SPTLC1	9	94843197	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2622471	94843197	46370234	591	50547										
NINJ1	0	genome.wustl.edu	37	chr9	95888858	95888858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccagcatgctctcggctgcGctcttcttgctggcgtaatg	11	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	95888858	95888858	G	A	SNP	NINJ1	ENST00000375446	human	ensembl	69_37n	-1	known	silent	c.138	p.S46	0.936	pfam_Ninjurin	pfam_Ninjurin	-	no_errors	NINJ1	HGNC	ENSG00000131669	79	0	0	54	24	30.77	-	-	-	A	95888858	G	A	95888858	2	1	569	1	0	0	0	0	0	0	0	1	10490	1078	38	1		1	NINJ1	9	95888858	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1045661	95888858	45324573	592	50548										
FAM120A	0	genome.wustl.edu	37	chr9	96294530	96294530	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccagttcgtcagtatgttTacggagtcctgtttagtttg	12	7	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	96294530	96294530	T	C	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	missense	c.1912	p.Y638H	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	190	0	0	144	75	34.25	-	-	-	C	96294530	T	C	96294530	3	2	569	1	0	0	0	0	1	0	0	0	5455	1754	61	5	1866	5	FAM120A	9	96294530	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	405672	96294530	44918901	593	50549										
ABCA1	0	genome.wustl.edu	37	chr9	107580945	107580945	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caccaagactgcagctcaccTttttcaggtatgacacagtg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	107580945	107580945	T	-	DEL	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	frame_shift_del	c.3461	p.K1154fs	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	169	0	0	135	69	33.01	-	-	-	-	107580945	T	-	107580945	7	5	569	1	0	1	0	1	0	0	0	0	28	1623	56	0	3436	0	ABCA1	9	107580945	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	11286415	107580945	33632486	594	50550										
SLC44A1	0	genome.wustl.edu	37	chr9	108061534	108061534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatggaagccgctggaggacCgtagctgcacagacatacca	12	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	108061534	108061534	C	T	SNP	SLC44A1	ENST00000374720	human	ensembl	69_37n	1	known	missense	c.70	p.R24C	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	169	0	0	127	59	31.72	-	-	-	T	108061534	C	T	108061534	3	4	569	1	0	0	0	0	1	0	0	0	14724	652	23	1	76	1	SLC44A1	9	108061534	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	480589	108061534	33151897	595	50551										
WDR31	0	genome.wustl.edu	37	chr9	116083833	116083833	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgtagtatgtatggttctCtggggacccagcacaggtga	13	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	116083833	116083833	C	G	SNP	WDR31	ENST00000374193	human	ensembl	69_37n	-1	known	missense	c.596	p.R199T	0.616	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR31	HGNC	ENSG00000148225	423	0	0	277	194	41.01	-	-	-	G	116083833	C	G	116083833	3	3	569	1	0	0	0	0	1	0	0	0	17383	913	32	2	523	2	WDR31	9	116083833	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8022299	116083833	25129598	596	50552										
POLE3	0	genome.wustl.edu	37	chr9	116172264	116172264	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagaacacaatcgttggggTttgtaggctcccagccagca	13	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	116172264	116172264	T	C	SNP	POLE3	ENST00000479871	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	POLE3	HGNC	ENSG00000148229	14	0	0	18	5	21.74	-	-	-	C	116172264	T	C	116172264	1	2	569	0	1	0	0	0	0	0	0	0	12272	1740	60	5		5	POLE3	9	116172264	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	88431	116172264	25041167	597	50553										
ASTN2	0	genome.wustl.edu	37	chr9	119737556	119737556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagggggttgatggacagcTccacaggcggaaccacaaag	14	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	119737556	119737556	T	C	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.1820	p.E607G	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	90	0	0	75	32	29.91	-	-	-	C	119737556	T	C	119737556	3	2	569	1	0	0	0	0	1	0	0	0	1069	1551	54	5	2487	5	ASTN2	9	119737556	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3565292	119737556	21475875	598	50554										
DAB2IP	0	genome.wustl.edu	37	chr9	124530894	124530894	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactcactgctctgggaggcCgtcagccagctggagcaggt	14	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	124530894	124530894	C	G	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	silent	c.1881	p.A627	0.335	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	61	0	0	38	18	32.14	-	-	-	G	124530894	C	G	124530894	2	3	569	1	0	0	0	0	0	0	0	1	4251	639	23	3		3	DAB2IP	9	124530894	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4793338	124530894	16682537	599	50555										
TTLL11	0	genome.wustl.edu	37	chr9	124584995	124584995	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggtgtgggggccggcccccCgacgggacgccccggccaca	17	18	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	124584995	124584995	C	T	SNP	TTLL11	ENST00000321582	human	ensembl	69_37n	-1	known	silent	c.2274	p.S758	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL11	HGNC	ENSG00000175764	33	0	0	20	11	35.48	-	-	-	T	124584995	C	T	124584995	2	4	569	1	0	0	0	0	0	0	0	1	16821	639	23	1		1	TTLL11	9	124584995	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	54101	124584995	16628436	600	50556										
GAPVD1	0	genome.wustl.edu	37	chr9	128025929	128025929	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atttggctgctgacccagccCcagcctcagctttcttgtcg	9	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	128025929	128025929	C	T	SNP	GAPVD1	ENST00000469528	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	8	0	0	7	8	53.33	-	-	-	T	128025929	C	T	128025929	1	4	569	0	1	0	0	0	0	0	0	0	6289	638	22	4		4	GAPVD1	9	128025929	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3440934	128025929	13187502	601	50557										
MAPKAP1	0	genome.wustl.edu	37	chr9	128201231	128201232	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtctgttcagttttctttgINStttttgagcaaagtagtcag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	128201231	128201232	-	T	INS	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1504_1503	p.Q501fs	1.000:1.000	NULL	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	362	0	0	231	124	34.93	-	-	-	T	128201232	-	T	128201231	7	5	569	1	0	1	1	0	0	0	0	0	9359	1386	48	0	68	0	MAPKAP1	9	128201231	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	175302	128201231	13012200	602	50558										
STXBP1	0	genome.wustl.edu	37	chr9	130440790	130440790	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagctctcacggtggactccGattatcaaggacatcatgga	10	11	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	130440790	130440790	G	A	SNP	STXBP1	ENST00000373299	human	ensembl	69_37n	1	known	silent	c.1440	p.P480	0.001	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	94	0	0	74	36	32.73	-	-	-	A	130440790	G	A	130440790	2	1	569	1	0	0	0	0	0	0	0	1	15443	1045	37	1		1	STXBP1	9	130440790	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2239559	130440790	10772641	603	50559										
NUP188	0	genome.wustl.edu	37	chr9	131752485	131752485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccacgtcttgccattcagCtgctgaaacgtctggccacg	10	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	131752485	131752485	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	silent	c.2620	p.L874	1.000	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	308	0	0	248	97	28.03	-	-	-	T	131752485	C	T	131752485	2	4	569	1	0	0	0	0	0	0	0	1	10831	796	28	4		4	NUP188	9	131752485	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1311695	131752485	9460946	604	50560										
USP20	0	genome.wustl.edu	37	chr9	132637681	132637681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcggttctacgtgtcccGcgagtggctcaacaagttca	12	12	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	132637681	132637681	G	A	SNP	USP20	ENST00000315480	human	ensembl	69_37n	1	known	missense	c.2141	p.R714H	1.000	smart_Pept_C19_DUSP	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP20	HGNC	ENSG00000136878	79	0	0	48	23	32.39	-	-	-	A	132637681	G	A	132637681	3	1	569	1	0	0	0	0	1	0	0	0	17149	1087	38	1	2211	1	USP20	9	132637681	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	885196	132637681	8575750	605	50561										
PPAPDC3	0	genome.wustl.edu	37	chr9	134183534	134183534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctctgggccctctgcgtgGgcctgtcccgcgtgatgatc	14	14	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	134183534	134183534	G	T	SNP	PPAPDC3	ENST00000372264	human	ensembl	69_37n	1	known	missense	c.676	p.G226C	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC3	HGNC	ENSG00000160539	86	0	0	48	56	53.85	-	-	-	T	134183534	G	T	134183534	3	4	569	1	0	0	0	0	1	0	0	0	12369	1232	43	4	682	4	PPAPDC3	9	134183534	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1545853	134183534	7029897	606	50562										
POMT1	0	genome.wustl.edu	37	chr9	134390889	134390890	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctataacatctccatgcccgINScccagaacctctggagactg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	134390889	134390890	-	C	INS	POMT1	ENST00000372228	human	ensembl	69_37n	1	known	frame_shift_ins	c.1318_1319	p.Q441fs	0.291:0.971	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714	159	0	0	111	58	34.32	-	-	-	C	134390890	-	C	134390889	7	5	569	1	0	1	1	0	0	0	0	0	12319	1087	38	0	1364	0	POMT1	9	134390889	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	207355	134390889	6822542	607	50563										
RALGDS	0	genome.wustl.edu	37	chr9	135976891	135976892	+	RNA	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagggaggcacccaggccaINScccccgccggcttaccagga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	135976891	135976892	-	C	INS	RALGDS	ENST00000469972	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RALGDS	HGNC	ENSG00000160271	62	0	0	47	20	29.85	-	-	-	C	135976892	-	C	135976891	6	5	569	0	1	1	1	0	0	0	0	0	13099	174	6	0		0	RALGDS	9	135976891	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1586002	135976891	5236540	608	50564										
WDR5	0	genome.wustl.edu	37	chr9	137005008	137005010	+	In_Frame_Del	DEL	GGA	GGA	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcgtcagagccatggcgacGgaggagaagaagcccgagac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	137005008	137005010	GGA	-	DEL	WDR5	ENST00000358625	human	ensembl	69_37n	1	known	in_frame_del	c.9_11	p.E5in_frame_del	0.658:1.000:1.000	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR5	HGNC	ENSG00000196363	53	0	0	27	13	32.5	-	-	-	-	137005010	GGA	-	137005008	7	5	569	1	0	1	0	1	0	0	0	0	17400	1103	39	0	11	0	WDR5	9	137005008	In_Frame_Del	DEL	GGA	TCGA-BH-A18G-01A-11D-A12B-09	1028117	137005008	4208423	609	50565										
COL5A1	0	genome.wustl.edu	37	chr9	137702110	137702110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccttcccctagggagagatcGgggagccggggcagaaagga	17	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	137702110	137702110	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.3484	p.G1162R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	219	0	0	137	99	41.95	-	-	-	A	137702110	G	A	137702110	3	1	569	1	0	0	0	0	1	0	0	0	3726	1116	39	1	3658	1	COL5A1	9	137702110	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	697102	137702110	3511321	610	50566										
MRPS2	0	genome.wustl.edu	37	chr9	138395417	138395417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccgtacatctttgggagccGcctggaccacgacatcatcg	11	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	138395417	138395417	G	A	SNP	MRPS2	ENST00000241600	human	ensembl	69_37n	1	known	missense	c.329	p.R110H	1.000	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	70	0	0	47	38	44.71	-	-	-	A	138395417	G	A	138395417	3	1	569	1	0	0	0	0	1	0	0	0	9903	1087	38	1	343	1	MRPS2	9	138395417	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	693307	138395417	2818014	611	50567										
KCNT1	0	genome.wustl.edu	37	chr9	138649006	138649006	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccgtttggccccagggcaAcatctgggagcagatcttcc	11	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	138649006	138649006	A	T	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.605	p.N202I	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	76	0	0	34	27	44.26	-	-	-	T	138649006	A	T	138649006	3	4	569	1	0	0	0	0	1	0	0	0	8145	43	2	5	635	5	KCNT1	9	138649006	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	253589	138649006	2564425	612	50568										
CAMSAP1	0	genome.wustl.edu	37	chr9	138719421	138719421	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgctcttctggtgtaacActgttttcgctgcagaaata	10	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	138719421	138719421	A	G	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.1088	p.V363A	0.066	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	155	0	0	102	61	37.42	-	-	-	G	138719421	A	G	138719421	3	3	569	1	0	0	0	0	1	0	0	0	2636	159	6	5	3793	5	CAMSAP1	9	138719421	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	70415	138719421	2494010	613	50569										
SNAPC4	0	genome.wustl.edu	37	chr9	139275774	139275774	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctctgcccaagtagcttacCtgggtaaacagggtaaacac	10	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139275774	139275774	C	A	SNP	SNAPC4	ENST00000298532	human	ensembl	69_37n	-1	known	missense	c.2388	p.Q796H	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	41	0	0	23	12	34.29	-	-	-	A	139275774	C	A	139275774	3	1	569	1	0	0	0	0	1	0	0	0	14926	695	24	4	2041	4	SNAPC4	9	139275774	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	556353	139275774	1937657	614	50570										
SNAPC4	0	genome.wustl.edu	37	chr9	139277851	139277851	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggcagcggggcctcccagCcaggcccctgcccctcctct	12	20	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139277851	139277851	C	T	SNP	SNAPC4	ENST00000298532	human	ensembl	69_37n	-1	known	nonsense	c.1770	p.W590*	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	17	0	0	3	13	81.25	-	-	-	T	139277851	C	T	139277851	4	4	569	1	0	0	0	0	0	1	0	0	14926	740	26	4	2671	4	SNAPC4	9	139277851	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2077	139277851	1935580	615	50571										
NOTCH1	0	genome.wustl.edu	37	chr9	139393655	139393655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgggcagccaggatcagtggCgtcgtgccatcatgcatgcg	15	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139393655	139393655	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	silent	c.5991	p.T1997	0.006	pirsf_Notch,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	121	0	0	61	40	38.83	-	-	-	T	139393655	C	T	139393655	2	4	569	1	0	0	0	0	0	0	0	1	10619	755	27	1		1	NOTCH1	9	139393655	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	115804	139393655	1819776	616	50572										
FAM69B	0	genome.wustl.edu	37	chr9	139617773	139617773	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccatcggcctgctggagttCgtggaggagctcttccacgg	15	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139617773	139617773	C	T	SNP	FAM69B	ENST00000371692	human	ensembl	69_37n	1	known	silent	c.843	p.F281	0.866	pfam_Uncharacterised_FAM69	pfam_Uncharacterised_FAM69	-	no_errors	FAM69B	HGNC	ENSG00000165716	39	0	0	34	24	40.68	-	-	-	T	139617773	C	T	139617773	2	4	569	1	0	0	0	0	0	0	0	1	5648	883	31	1		1	FAM69B	9	139617773	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	224118	139617773	1595658	617	50573										
PHPT1	0	genome.wustl.edu	37	chr9	139744796	139744796	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagacctgaggggtgggacgGacacccccagacatggccgg	16	13	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139744796	139744796	G	A	SNP	PHPT1	ENST00000492540	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHPT1	HGNC	ENSG00000054148	29	0	0	13	7	35	-	-	-	A	139744796	G	A	139744796	1	1	569	0	1	0	0	0	0	0	0	0	11934	1189	41	2		2	PHPT1	9	139744796	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	127023	139744796	1468635	618	50574										
PTGDS	0	genome.wustl.edu	37	chr9	139874487	139874487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agggcagcaagggccctggcGaggacttccgcatggccacc	15	14	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139874487	139874487	G	A	SNP	PTGDS	ENST00000224167	human	ensembl	69_37n	1	known	missense	c.523	p.E175K	0.015	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth	-	no_errors	PTGDS	HGNC	ENSG00000107317	57	0	0	18	17	48.57	-	-	-	A	139874487	G	A	139874487	3	1	569	1	0	0	0	0	1	0	0	0	12822	1059	37	1	435	1	PTGDS	9	139874487	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	129691	139874487	1338944	619	50575										
PTGDS	0	genome.wustl.edu	37	chr9	139875171	139875172	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgatgggggatctgtgcagINStttgggggctcagtcaagac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	139875171	139875172	-	T	INS	PTGDS	ENST00000444903	human	ensembl	69_37n	1	known	frame_shift_ins	c.70_71	p.W25fs	0.000:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTGDS	HGNC	ENSG00000107317	114	0	0	69	37	34.91	-	-	-	T	139875172	-	T	139875171	7	5	569	1	0	1	1	0	0	0	0	0	12822	1044	36	0		0	PTGDS	9	139875171	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	684	139875171	1338260	620	50576										
FAM166A	0	genome.wustl.edu	37	chr9	140139311	140139311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcgttccctgaacgttggCgactgtctgatgtggccaaa	11	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	140139311	140139311	C	T	SNP	FAM166A	ENST00000388932	human	ensembl	69_37n	-1	known	missense	c.772	p.A258T	0.000	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163	30	0	0	23	11	32.35	-	-	-	T	140139311	C	T	140139311	3	4	569	1	0	0	0	0	1	0	0	0	5521	783	27	1		1	FAM166A	9	140139311	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	264140	140139311	1074120	621	50577										
CACNA1B	0	genome.wustl.edu	37	chr9	140919538	140919538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcagcggaacgtcactcgcaTgggcagtcagcccccagacc	11	16	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	9	140919538	140919538	T	C	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.3203	p.M1068T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	113	0	0	68	54	44.26	-	-	-	C	140919538	T	C	140919538	3	2	569	1	0	0	0	0	1	0	0	0	2564	1464	51	5	3278	5	CACNA1B	9	140919538	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	780227	140919538	293893	622	50578										
PFKP	0	genome.wustl.edu	37	chr10	3174632	3174632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccagagaggccttgtgctcAggtgagagagagagaccagg	16	8	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	3174632	3174632	A	G	SNP	PFKP	ENST00000381125	human	ensembl	69_37n	1	known	missense	c.1909	p.R637G	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	131	1	0.76	115	56	32.75	-	-	-	G	3174632	A	G	3174632	3	3	569	1	0	0	0	0	1	0	0	0	11840	202	7	5	1979	5	PFKP	10	3174632	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09		3174632	132360115	623	50579										
AKR1C1	0	genome.wustl.edu	37	chr10	5009171	5009171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgaccagccttggaaaggtCactgaaaaatcttcaattgg	9	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	5009171	5009171	C	T	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	1	known	missense	c.305	p.S102L	0.185	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	423	1	0.24	268	140	34.31	-	-	-	T	5009171	C	T	5009171	3	4	569	1	0	0	0	0	1	0	0	0	469	838	29	2	315	2	AKR1C1	10	5009171	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1834539	5009171	130525576	624	50580										
AKR1C1	0	genome.wustl.edu	37	chr10	5009412	5009412	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acattttgaatccatacttcCgtgattgcatgtctataaga	6	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	5009412	5009412	C	T	SNP	AKR1C1	ENST00000477661	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKR1C1	HGNC	ENSG00000187134	47	0	0	21	15	41.67	-	-	-	T	5009412	C	T	5009412	1	4	569	0	1	0	0	0	0	0	0	0	469	667	23	1		1	AKR1C1	10	5009412	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	241	5009412	130525335	625	50581										
NET1	0	genome.wustl.edu	37	chr10	5495005	5495005	+	RNA	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatatctactggtgaatacaTtttttttaggtgaggtctag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	5495005	5495005	T	-	DEL	NET1	ENST00000465087	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NET1	HGNC	ENSG00000173848	33	0	0	19	10	34.48	-	-	-	-	5495005	T	-	5495005	6	5	569	0	1	1	0	1	0	0	0	0	10410	1508	52	0		0	NET1	10	5495005	RNA	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	485593	5495005	130039742	626	50582										
ASB13	0	genome.wustl.edu	37	chr10	5693197	5693197	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctcatgcaggcctcgtgcaGgggggacgctgtgtacaggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	5693197	5693197	G	-	DEL	ASB13	ENST00000357700	human	ensembl	69_37n	-1	known	frame_shift_del	c.361	p.L121fs	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB13	HGNC	ENSG00000196372	39	0	0	31	14	30.43	-	-	-	-	5693197	G	-	5693197	7	5	569	1	0	1	0	1	0	0	0	0	1021	991	35	0	491	0	ASB13	10	5693197	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	198192	5693197	129841550	627	50583										
SEC61A2	0	genome.wustl.edu	37	chr10	12209886	12209886	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttattcaatcagtgtttgcGcagcaggtactactatatgt	8	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	12209886	12209886	G	A	SNP	SEC61A2	ENST00000495368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC61A2	HGNC	ENSG00000065665	120	0	0	49	43	46.24	-	-	-	A	12209886	G	A	12209886	1	1	569	0	1	0	0	0	0	0	0	0	14089	1102	38	1		1	SEC61A2	10	12209886	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6516689	12209886	123324861	628	50584										
PHYH	0	genome.wustl.edu	37	chr10	13336579	13336580	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcacctcctttctgcagaINSttttttcaaactcattccta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	13336579	13336580	-	T	INS	PHYH	ENST00000263038	human	ensembl	69_37n	-1	known	frame_shift_ins	c.263_262	p.I88fs	1.000:0.556	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537	317	0	0	203	92	31.19	-	-	-	T	13336580	-	T	13336579	7	5	569	1	0	1	1	0	0	0	0	0	11938	333	12	0	777	0	PHYH	10	13336579	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1126693	13336579	122198168	629	50585										
CUBN	0	genome.wustl.edu	37	chr10	16981063	16981063	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacatttactgtccattggtAattggagttatgtgggtagt	11	5	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	16981063	16981063	A	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.5632	p.Y1878H	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	445	0	0	301	225	42.78	-	-	-	G	16981063	A	G	16981063	3	3	569	1	0	0	0	0	1	0	0	0	4082	362	13	5	5359	5	CUBN	10	16981063	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3644484	16981063	118553684	630	50586										
KIAA1462	0	genome.wustl.edu	37	chr10	30317579	30317579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccggggggctggccccacaGccaccgggggctggaatcgg	18	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	30317579	30317579	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	silent	c.1498	p.L500	0.936	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	35	0	0	26	14	34.15	-	-	-	A	30317579	G	A	30317579	2	1	569	1	0	0	0	0	0	0	0	1	8286	962	34	4		4	KIAA1462	10	30317579	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13336516	30317579	105217168	631	50587										
ZNF438	0	genome.wustl.edu	37	chr10	31139241	31139241	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaatggtcctaaactgactCttattctgcaaacctttcct	5	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	31139241	31139241	C	A	SNP	ZNF438	ENST00000361310	human	ensembl	69_37n	-1	known	missense	c.93	p.K31N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621	334	0	0	262	120	31.41	-	-	-	A	31139241	C	A	31139241	3	1	569	1	0	0	0	0	1	0	0	0	18006	912	32	2	2401	2	ZNF438	10	31139241	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	821662	31139241	104395506	632	50588										
ZEB1	0	genome.wustl.edu	37	chr10	31815987	31815987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaggaagaaaaagaatgtgAaaaaccacaaggggatgagg	14	4	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	31815987	31815987	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.3173	p.E1058G	0.094	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	617	0	0	455	270	37.19	-	-	-	G	31815987	A	G	31815987	3	3	569	1	0	0	0	0	1	0	0	0	17719	246	9	5	3218	5	ZEB1	10	31815987	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	676746	31815987	103718760	633	50589										
EPC1	0	genome.wustl.edu	37	chr10	32580139	32580139	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attgcttcctggtgtttaaaTtgactgctattagtaatagg	9	5	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	32580139	32580139	T	A	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.927	p.Q309H	0.993	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	398	0	0	283	180	38.88	-	-	-	A	32580139	T	A	32580139	3	1	569	1	0	0	0	0	1	0	0	0	5197	1490	52	5	1623	5	EPC1	10	32580139	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	764152	32580139	102954608	634	50590										
EPC1	0	genome.wustl.edu	37	chr10	32581465	32581465	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttaagtgcaatagctctctTttacttttttctcttctttt	4	8	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	32581465	32581465	T	C	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	silent	c.774	p.K258	0.965	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	353	0	0	259	125	32.55	-	-	-	C	32581465	T	C	32581465	2	2	569	1	0	0	0	0	0	0	0	1	5197	1838	64	5		5	EPC1	10	32581465	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1326	32581465	102953282	635	50591										
CUL2	0	genome.wustl.edu	37	chr10	35327850	35327850	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtttggtgtcacttaccaTtttttttctcttgtcgaatt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	35327850	35327850	T	-	DEL	CUL2	ENST00000537177	human	ensembl	69_37n	-1	known	frame_shift_del	c.932	p.N311fs	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094	431	4	0.91	297	158	34.42	-	-	-	-	35327850	T	-	35327850	7	5	569	1	0	1	0	1	0	0	0	0	4086	1493	52	0	1414	0	CUL2	10	35327850	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	2746385	35327850	100206897	636	50592										
ANKRD30A	0	genome.wustl.edu	37	chr10	37466667	37466667	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaaaaagaaatagataaaaTaaatggaaaattagaaggta	7	1	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	37466667	37466667	T	A	SNP	ANKRD30A	ENST00000374660	human	ensembl	69_37n	1	putative	missense	c.2327	p.I776K	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	34	0	0	21	10	32.26	-	-	-	A	37466667	T	A	37466667	3	1	569	1	0	0	0	0	1	0	0	0	658	1421	49	5		5	ANKRD30A	10	37466667	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2138817	37466667	98068080	637	50593										
RET	0	genome.wustl.edu	37	chr10	43597893	43597895	+	In_Frame_Del	DEL	CTC	CTC	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgtgcccgcgtatacttCtccttcttcaacacctcctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	43597893	43597895	CTC	-	DEL	RET	ENST00000355710	human	ensembl	69_37n	1	known	in_frame_del	c.441_443	p.S148in_frame_del	0.516:0.499:0.495	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	201	0	0	162	74	31.36	-	-	-	-	43597895	CTC	-	43597893	7	5	569	1	0	1	0	1	0	0	0	0	13318	912	32	0	451	0	RET	10	43597893	In_Frame_Del	DEL	CTC	TCGA-BH-A18G-01A-11D-A12B-09	6131226	43597893	91936854	638	50594										
AGAP7	0	genome.wustl.edu	37	chr10	51465003	51465003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaaaggcgggtgccaagacTgcggtggatacctgagcatt	16	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	51465003	51465003	T	C	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.1453	p.S485G	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	463	0	0	377	80	17.47	-	-	-	C	51465003	T	C	51465003	3	2	569	1	0	0	0	0	1	0	0	0	373	1580	55	5	542	5	AGAP7	10	51465003	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7867110	51465003	84069744	639	50595										
FAM21A	0	genome.wustl.edu	37	chr10	51890690	51890690	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgctacggaagcaattaaAccctctcagaaaaccagaga	7	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	51890690	51890690	A	G	SNP	FAM21A	ENST00000282633	human	ensembl	69_37n	1	known	silent	c.3738	p.K1246	0.999	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290	315	0	0	230	110	32.35	-	-	-	G	51890690	A	G	51890690	2	3	569	1	0	0	0	0	0	0	0	1	5582	40	2	5		5	FAM21A	10	51890690	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	425687	51890690	83644057	640	50596										
PRKG1	0	genome.wustl.edu	37	chr10	54040671	54040671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaaatctcatcctagatcAccgaggttatgccaaactgg	8	10	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	54040671	54040671	A	G	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	missense	c.1526	p.H509R	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	208	0	0	128	83	39.34	-	-	-	G	54040671	A	G	54040671	3	3	569	1	0	0	0	0	1	0	0	0	12603	159	6	5	1846	5	PRKG1	10	54040671	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2149981	54040671	81494076	641	50597										
PCDH15	0	genome.wustl.edu	37	chr10	55566571	55566572	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagagttggtcttgcattcaINSttttttcagtagaaaatggc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	55566571	55566572	-	T	INS	PCDH15	ENST00000414778	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4814_4813	p.M1605fs	1.000:1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	425	0	0	298	141	32.12	-	-	-	T	55566572	-	T	55566571	7	5	569	1	0	1	1	0	0	0	0	0	11584	217	8	0	235	0	PCDH15	10	55566571	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1525900	55566571	79968176	642	50598										
FAM13C	0	genome.wustl.edu	37	chr10	61028377	61028377	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttccgcttgaggctctggAtgtgcttggtgagctgggtg	16	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	61028377	61028377	A	G	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.878	p.I293T	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	222	0	0	154	101	39.61	-	-	-	G	61028377	A	G	61028377	3	3	569	1	0	0	0	0	1	0	0	0	5494	333	12	5	907	5	FAM13C	10	61028377	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	5461806	61028377	74506370	643	50599										
ANK3	0	genome.wustl.edu	37	chr10	62038606	62038606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcttgcccagccaaagatgCgatgtgcaatgctgtgtttc	11	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	62038606	62038606	C	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.340	p.A114T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	410	0	0	291	164	35.96	-	-	-	T	62038606	C	T	62038606	3	4	569	1	0	0	0	0	1	0	0	0	622	768	27	1	13286	1	ANK3	10	62038606	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1010229	62038606	73496141	644	50600										
ZNF365	0	genome.wustl.edu	37	chr10	64136598	64136598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaagttcagagacgagagCgggccttaaacagacaggtg	15	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	64136598	64136598	C	T	SNP	ZNF365	ENST00000410046	human	ensembl	69_37n	1	known	missense	c.646	p.R216W	0.998	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	64	0	0	60	37	38.14	-	-	-	T	64136598	C	T	64136598	3	4	569	1	0	0	0	0	1	0	0	0	17965	759	27	1	648	1	ZNF365	10	64136598	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2097992	64136598	71398149	645	50601										
COL13A1	0	genome.wustl.edu	37	chr10	71677050	71677050	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catttcttcctccagggagaAcggggcatgccagggatgcc	13	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	71677050	71677050	A	G	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	silent	c.957	p.E319	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	91	0	0	57	46	44.23	-	-	-	G	71677050	A	G	71677050	2	3	569	1	0	0	0	0	0	0	0	1	3700	40	2	5		5	COL13A1	10	71677050	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7540452	71677050	63857697	646	50602										
SPOCK2	0	genome.wustl.edu	37	chr10	73827373	73827373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagcagcaagcttcctaccgCtggccgggccggctacactg	13	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	73827373	73827373	C	T	SNP	SPOCK2	ENST00000317376	human	ensembl	69_37n	-1	known	missense	c.707	p.S236N	0.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742	79	0	0	53	37	41.11	-	-	-	T	73827373	C	T	73827373	3	4	569	1	0	0	0	0	1	0	0	0	15171	797	28	4	587	4	SPOCK2	10	73827373	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2150323	73827373	61707374	647	50603										
NUDT13	0	genome.wustl.edu	37	chr10	74886455	74886455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagtgtggaagagaccatccGccgagaagttgcagaagagg	15	7	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	74886455	74886455	G	A	SNP	NUDT13	ENST00000357321	human	ensembl	69_37n	1	known	missense	c.728	p.R243H	0.273	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321	282	0	0	221	89	28.71	-	-	-	A	74886455	G	A	74886455	3	1	569	1	0	0	0	0	1	0	0	0	10802	1087	38	1	754	1	NUDT13	10	74886455	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1059082	74886455	60648292	648	50604										
KCNMA1	0	genome.wustl.edu	37	chr10	78708960	78708960	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cattcccgcttgaggtactcAatagagcccacaaacacaat	6	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	78708960	78708960	A	G	SNP	KCNMA1	ENST00000372403	human	ensembl	69_37n	-1	known	missense	c.2327	p.L776S	0.984	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNMA1	HGNC	ENSG00000156113	119	0	0	79	52	39.69	-	-	-	G	78708960	A	G	78708960	3	3	569	1	0	0	0	0	1	0	0	0	8127	126	5	5	1118	5	KCNMA1	10	78708960	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3822505	78708960	56825787	649	50605										
DLG5	0	genome.wustl.edu	37	chr10	79554687	79554687	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggagccgctcaatagcgtgCggagcaatgtccaggaggca	15	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	79554687	79554687	C	T	SNP	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	silent	c.5466	p.P1822	0.426	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	566	2	0.35	360	256	41.49	-	-	-	T	79554687	C	T	79554687	2	4	569	1	0	0	0	0	0	0	0	1	4594	755	27	1		1	DLG5	10	79554687	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	845727	79554687	55980060	650	50606										
POLR3A	0	genome.wustl.edu	37	chr10	79767519	79767519	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catctgcagcttcattctgtCcccagtctcgcagcaaaatg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	79767519	79767519	C	-	DEL	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	frame_shift_del	c.2015	p.G672fs	1.000	pfam_RNA_pol_Rpb1_3	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	215	0	0	136	82	37.1	-	-	-	-	79767519	C	-	79767519	7	5	569	1	0	1	0	1	0	0	0	0	12302	855	30	0	2225	0	POLR3A	10	79767519	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	212832	79767519	55767228	651	50607										
C10orf99	0	genome.wustl.edu	37	chr10	85933676	85933676	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctccatcttctccacagaAggtagggcagcccccagggt	10	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	85933676	85933676	A	T	SNP	C10orf99	ENST00000372126	human	ensembl	69_37n	1	known	missense	c.69	p.E23D	0.998	NULL	NULL	-	no_errors	C10orf99	HGNC	ENSG00000188373	494	0	0	321	150	31.78	-	-	-	T	85933676	A	T	85933676	3	4	569	1	0	0	0	0	1	0	0	0	1638	86	3	5	71	5	C10orf99	10	85933676	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6166157	85933676	49601071	652	50608										
GRID1	0	genome.wustl.edu	37	chr10	87362186	87362186	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcatggagggcatggtcgcCgagctgctcagcggcagcgg	18	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	87362186	87362186	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	silent	c.2874	p.S958	0.616	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	128	1	0.78	102	52	33.77	-	-	-	T	87362186	C	T	87362186	2	4	569	1	0	0	0	0	0	0	0	1	6822	639	23	1		1	GRID1	10	87362186	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1428510	87362186	48172561	653	50609										
LIPJ	0	genome.wustl.edu	37	chr10	90366448	90366448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagacaacgtctccattataCaacatgacaaacatgaatgt	5	10	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	90366448	90366448	C	T	SNP	LIPJ	ENST00000371939	human	ensembl	69_37n	1	known	silent	c.885	p.Y295	0.806	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPJ	HGNC	ENSG00000204022	155	0	0	130	70	35	-	-	-	T	90366448	C	T	90366448	2	4	569	1	0	0	0	0	0	0	0	1	8882	489	17	4		4	LIPJ	10	90366448	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3004262	90366448	45168299	654	50610										
ACTA2	0	genome.wustl.edu	37	chr10	90706831	90706831	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctacaaaggacatgaactcaTcattttttatggctacaagg	7	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	90706831	90706831	T	C	SNP	ACTA2	ENST00000488967	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.092	-	-	-	no_errors	ACTA2	HGNC	ENSG00000107796	27	0	0	25	11	30.56	-	-	-	C	90706831	T	C	90706831	1	2	569	0	1	0	0	0	0	0	0	0	192	1450	50	5		5	ACTA2	10	90706831	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	340383	90706831	44827916	655	50611										
LIPA	0	genome.wustl.edu	37	chr10	90984930	90984930	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagccacaggacccagggcAaaaaacattttaatcctttt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	90984930	90984930	A	-	DEL	LIPA	ENST00000425287	human	ensembl	69_37n	-1	known	frame_shift_del	c.600	p.F200fs	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_AB_hydrolase_lipase	-	no_errors	LIPA	HGNC	ENSG00000107798	313	0	0	226	106	31.74	-	-	-	-	90984930	A	-	90984930	7	5	569	1	0	1	0	1	0	0	0	0	8875	127	5	0	625	0	LIPA	10	90984930	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	278099	90984930	44549817	656	50612										
IFIT1	0	genome.wustl.edu	37	chr10	91162830	91162830	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttaccgaagaaaaggctcTgtggataaagctcttgagtt	10	6	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	91162830	91162830	T	G	SNP	IFIT1	ENST00000371804	human	ensembl	69_37n	1	known	silent	c.798	p.S266	0.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	50	0	0	37	25	40.32	-	-	-	G	91162830	T	G	91162830	2	3	569	1	0	0	0	0	0	0	0	1	7575	1567	55	5		5	IFIT1	10	91162830	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	177900	91162830	44371917	657	50613										
KIF20B	0	genome.wustl.edu	37	chr10	91498334	91498335	+	In_Frame_Ins	INS	-	-	AAG													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaacatttacttcaattaaINSaagaagaagaagaagaaacc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	91498334	91498335	-	AAG	INS	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	in_frame_ins	c.3826_3827	p.1280in_frame_insE	0.846:0.846	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	50	0	0	54	18	25	-	-	-	AAG	91498335	-	AAG	91498334	7	5	569	1	0	1	1	0	0	0	0	0	8339	15	1	0	3690	0	KIF20B	10	91498334	In_Frame_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	335504	91498334	44036413	658	50614										
TNKS2	0	genome.wustl.edu	37	chr10	93605590	93605590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggctttcacacctttgcacGaagcagcccaaaagggacga	11	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	93605590	93605590	G	A	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	missense	c.2251	p.E751K	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	175	0	0	151	69	31.36	-	-	-	A	93605590	G	A	93605590	3	1	569	1	0	0	0	0	1	0	0	0	16416	1059	37	1	2321	1	TNKS2	10	93605590	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2107256	93605590	41929157	659	50615										
BTAF1	0	genome.wustl.edu	37	chr10	93787059	93787059	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgtttactcttgataaggTaaagaacttacacaatttgt	6	6	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	93787059	93787059	T	C	SNP	BTAF1	ENST00000265990	human	ensembl	69_37n	1	known	splice_site	c.5406+2	e37+2	1.000	-	-	-	no_errors	BTAF1	HGNC	ENSG00000095564	306	1	0.32	220	170	43.59	-	-	-	C	93787059	T	C	93787059	5	2	569	1	0	0	0	0	0	0	1	0	1544	1652	57	5	5554	5	BTAF1	10	93787059	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	181469	93787059	41747688	660	50616										
ANKRD2	0	genome.wustl.edu	37	chr10	99343450	99343450	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggggcctaatgatagtgggCgagagacccctcagcctgtg	15	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	99343450	99343450	C	T	SNP	ANKRD2	ENST00000307518	human	ensembl	69_37n	1	known	nonsense	c.1051	p.R351*	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD2	HGNC	ENSG00000165887	27	0	0	19	11	36.67	-	-	-	T	99343450	C	T	99343450	4	4	569	1	0	0	0	0	0	1	0	0	647	760	27	1	1085	1	ANKRD2	10	99343450	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5556391	99343450	36191297	661	50617										
PI4K2A	0	genome.wustl.edu	37	chr10	99426328	99426328	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacctatatgaactcttcaaGgttagccctgggaacctcag	9	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	99426328	99426328	G	A	SNP	PI4K2A	ENST00000370631	human	ensembl	69_37n	1	known	silent	c.1218	p.K406	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	131	0	0	66	53	44.17	-	-	-	A	99426328	G	A	99426328	2	1	569	1	0	0	0	0	0	0	0	1	11945	1014	35	4		4	PI4K2A	10	99426328	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	82878	99426328	36108419	662	50618										
SEMA4G	0	genome.wustl.edu	37	chr10	102740653	102740653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctcccgctaccgatcctgCtatgactgcatcttggcccg	9	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	102740653	102740653	C	T	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	silent	c.1542	p.C514	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	92	0	0	55	33	37.5	-	-	-	T	102740653	C	T	102740653	2	4	569	1	0	0	0	0	0	0	0	1	14124	805	28	4		4	SEMA4G	10	102740653	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3314325	102740653	32794094	663	50619										
FGF8	0	genome.wustl.edu	37	chr10	103530145	103530145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggctgcgcgtgaagggcgGgtagttgaggaactcgaagc	18	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	103530145	103530145	G	A	SNP	FGF8	ENST00000320185	human	ensembl	69_37n	-1	known	missense	c.676	p.P226S	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF8	HGNC	ENSG00000107831	56	0	0	35	17	32.69	-	-	-	A	103530145	G	A	103530145	3	1	569	1	0	0	0	0	1	0	0	0	5904	1232	43	4	62	4	FGF8	10	103530145	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	789492	103530145	32004602	664	50620										
FGF8	0	genome.wustl.edu	37	chr10	103534553	103534553	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccaggacctgcacgtgcttCccgctggtgcggctgtagag	15	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	103534553	103534553	C	T	SNP	FGF8	ENST00000320185	human	ensembl	69_37n	-1	known	silent	c.273	p.G91	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF8	HGNC	ENSG00000107831	178	0	0	108	82	42.93	-	-	-	T	103534553	C	T	103534553	2	4	569	1	0	0	0	0	0	0	0	1	5904	842	30	2		2	FGF8	10	103534553	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4408	103534553	32000194	665	50621										
ACTR1A	0	genome.wustl.edu	37	chr10	104240642	104240642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaggtttttctgtggatgGatcgggcaccgtcttcctca	12	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	104240642	104240642	G	A	SNP	ACTR1A	ENST00000369905	human	ensembl	69_37n	-1	known	missense	c.1109	p.S370F	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1A	HGNC	ENSG00000138107	305	0	0	195	111	36.27	-	-	-	A	104240642	G	A	104240642	3	1	569	1	0	0	0	0	1	0	0	0	209	1174	41	2	25	2	ACTR1A	10	104240642	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	706089	104240642	31294105	666	50622										
CYP17A1	0	genome.wustl.edu	37	chr10	104596968	104596968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgcagcttgaagaagttgtTatgcatatggccgtgtctgg	13	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	104596968	104596968	T	C	SNP	CYP17A1	ENST00000369887	human	ensembl	69_37n	-1	known	missense	c.151	p.N51D	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795	318	0	0	158	97	37.89	-	-	-	C	104596968	T	C	104596968	3	2	569	1	0	0	0	0	1	0	0	0	4178	1754	61	5	1407	5	CYP17A1	10	104596968	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	356326	104596968	30937779	667	50623										
PDCD11	0	genome.wustl.edu	37	chr10	105181188	105181188	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaaaggtgaccaatgtggaTgaggagaagcagcggatgct	16	6	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	105181188	105181188	T	C	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	silent	c.2361	p.D787	0.982	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	174	0	0	122	75	37.88	-	-	-	C	105181188	T	C	105181188	2	2	569	1	0	0	0	0	0	0	0	1	11690	1461	51	5		5	PDCD11	10	105181188	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	584220	105181188	30353559	668	50624										
SORCS3	0	genome.wustl.edu	37	chr10	107012633	107012633	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccaagaacctgacagagaGgaggaaaggcaatgaagggg	15	7	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	107012633	107012633	G	T	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.3206	p.R1069M	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	356	0	0	337	139	29.2	-	-	-	T	107012633	G	T	107012633	3	4	569	1	0	0	0	0	1	0	0	0	15021	1000	35	4	3296	4	SORCS3	10	107012633	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1831445	107012633	28522114	669	50625										
NHLRC2	0	genome.wustl.edu	37	chr10	115614726	115614728	+	In_Frame_Del	DEL	AGG	AGG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctcgacgccgttacccagcAggagaaggacagcctggtct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	115614726	115614728	AGG	-	DEL	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	in_frame_del	c.95_97	p.E33in_frame_del	1.000:1.000:1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	85	0	0	72	28	28	-	-	-	-	115614728	AGG	-	115614726	7	5	569	1	0	1	0	1	0	0	0	0	10478	188	7	0	97	0	NHLRC2	10	115614726	In_Frame_Del	DEL	AGG	TCGA-BH-A18G-01A-11D-A12B-09	8602093	115614726	19920021	670	50626										
TDRD1	0	genome.wustl.edu	37	chr10	115973857	115973857	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggagaattttattgccaTgtgcttaaagaggatggtaa	11	5	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	115973857	115973857	T	C	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	silent	c.2196	p.H732	0.094	pfam_Tudor	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	895	1	0.11	618	307	33.15	-	-	-	C	115973857	T	C	115973857	2	2	569	1	0	0	0	0	0	0	0	1	15825	1461	51	5		5	TDRD1	10	115973857	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	359131	115973857	19560890	671	50627										
ATRNL1	0	genome.wustl.edu	37	chr10	116887435	116887435	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctggctatgcactgttacaTttttttagtgatgctgcgta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	116887435	116887435	T	-	DEL	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	512	0	0	379	230	37.58	-	-	-	-	116887435	T	-	116887435	7	5	569	1	0	1	0	1	0	0	0	0	1211	1490	52	0	584	0	ATRNL1	10	116887435	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	913578	116887435	18647312	672	50628										
VAX1	0	genome.wustl.edu	37	chr10	118891730	118891730	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggccccgcactataggggcTgccaccctctgcccccggag	13	18	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	118891730	118891730	T	A	SNP	VAX1	ENST00000277905	human	ensembl	69_37n	-1	known	missense	c.551	p.Q184L	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	VAX1	HGNC	ENSG00000148704	105	0	0	63	34	35.05	-	-	-	A	118891730	T	A	118891730	3	1	569	1	0	0	0	0	1	0	0	0	17231	1580	55	5	13	5	VAX1	10	118891730	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2004295	118891730	16643017	673	50629										
PRLHR	0	genome.wustl.edu	37	chr10	120354131	120354131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccagaactcctcgcagaggCgcacgtcgtgcggcttgagc	13	15	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	120354131	120354131	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	69_37n	-1	known	missense	c.626	p.R209H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prolrel_pep_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prolrel_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973	9	0	0	5	4	44.44	-	-	-	T	120354131	C	T	120354131	3	4	569	1	0	0	0	0	1	0	0	0	12611	768	27	1	490	1	PRLHR	10	120354131	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1462401	120354131	15180616	674	50630										
EIF3A	0	genome.wustl.edu	37	chr10	120819250	120819250	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgcatagaaaacaaagggTtaataacactagccactgtt	7	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	120819250	120819250	T	C	SNP	EIF3A	ENST00000462527	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.294	-	-	-	no_errors	EIF3A	HGNC	ENSG00000107581	94	0	0	65	32	32.99	-	-	-	C	120819250	T	C	120819250	1	2	569	0	1	0	0	0	0	0	0	0	5047	1740	60	5		5	EIF3A	10	120819250	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	465119	120819250	14715497	675	50631										
TACC2	0	genome.wustl.edu	37	chr10	123847394	123847394	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctggggatgggaaggtgtgCgtctcctcacctccagagcc	15	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	123847394	123847394	C	T	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.5379	p.C1793	0.005	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	22	0	0	21	17	44.74	-	-	-	T	123847394	C	T	123847394	2	4	569	1	0	0	0	0	0	0	0	1	15594	776	27	1		1	TACC2	10	123847394	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3028144	123847394	11687353	676	50632										
GPR26	0	genome.wustl.edu	37	chr10	125426499	125426499	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcgtgctctgctgcacgtaCctcaaggtgctcaaggtggc	13	12	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	125426499	125426499	C	T	SNP	GPR26	ENST00000284674	human	ensembl	69_37n	1	known	silent	c.576	p.Y192	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478	39	0	0	23	16	40	-	-	-	T	125426499	C	T	125426499	2	4	569	1	0	0	0	0	0	0	0	1	6734	518	18	4		4	GPR26	10	125426499	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1579105	125426499	10108248	677	50633										
CHST15	0	genome.wustl.edu	37	chr10	125801930	125801930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gataatcttccacgggatagCggtctcgcagcccatctctt	9	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	125801930	125801930	C	T	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	missense	c.920	p.R307H	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	168	0	0	119	79	39.7	-	-	-	T	125801930	C	T	125801930	3	4	569	1	0	0	0	0	1	0	0	0	3432	768	27	1	785	1	CHST15	10	125801930	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	375431	125801930	9732817	678	50634										
C10orf90	0	genome.wustl.edu	37	chr10	128193497	128193497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgaatgttgactccgctgCggttagccagagattgcttg	13	8	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	128193497	128193497	C	T	SNP	C10orf90	ENST00000544758	human	ensembl	69_37n	-1	known	missense	c.563	p.R188H	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493	201	0	0	128	79	38.16	-	-	-	T	128193497	C	T	128193497	3	4	569	1	0	0	0	0	1	0	0	0	1633	768	27	1	1855	1	C10orf90	10	128193497	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2391567	128193497	7341250	679	50635										
DOCK1	0	genome.wustl.edu	37	chr10	129231622	129231622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacgatgccttcctcatccCgccctctgtctgtggcctct	7	18	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	129231622	129231622	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.4927	p.R1643C	1.000	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	249	1	0.4	160	98	37.98	-	-	-	T	129231622	C	T	129231622	3	4	569	1	0	0	0	0	1	0	0	0	4719	652	23	1	5117	1	DOCK1	10	129231622	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1038125	129231622	6303125	680	50636										
DOCK1	0	genome.wustl.edu	37	chr10	129242509	129242509	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaacaccccctccagttacAccaagggccaagctcagctt	6	17	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	129242509	129242509	A	G	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	silent	c.5316	p.T1772	0.042	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	294	0	0	161	109	40.07	-	-	-	G	129242509	A	G	129242509	2	3	569	1	0	0	0	0	0	0	0	1	4719	146	6	5		5	DOCK1	10	129242509	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	10887	129242509	6292238	681	50637										
CLRN3	0	genome.wustl.edu	37	chr10	129690895	129690895	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccacgaaaaagtccgtaagTgatgaaaatgctcccatttg	8	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	129690895	129690895	T	C	SNP	CLRN3	ENST00000368671	human	ensembl	69_37n	-1	known	missense	c.154	p.T52A	0.156	NULL	NULL	-	no_errors	CLRN3	HGNC	ENSG00000180745	267	0	0	164	113	40.79	-	-	-	C	129690895	T	C	129690895	3	2	569	1	0	0	0	0	1	0	0	0	3589	1696	59	5	538	5	CLRN3	10	129690895	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	448386	129690895	5843852	682	50638										
PTPRE	0	genome.wustl.edu	37	chr10	129866447	129866447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctgcacttcaccagctggCccgacttcggagtgcctttt	10	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	129866447	129866447	C	T	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	missense	c.904	p.P302S	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	64	0	0	30	20	39.22	-	-	-	T	129866447	C	T	129866447	3	4	569	1	0	0	0	0	1	0	0	0	12883	739	26	4	981	4	PTPRE	10	129866447	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	175552	129866447	5668300	683	50639										
STK32C	0	genome.wustl.edu	37	chr10	134038860	134038860	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctttccgacagaaagaaggAaaaacagctgccacggggtc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	134038860	134038860	A	-	DEL	STK32C	ENST00000478542	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STK32C	HGNC	ENSG00000165752	64	0	0	43	18	29.03	-	-	-	-	134038860	A	-	134038860	6	5	569	0	1	1	0	1	0	0	0	0	15390	261	9	0		0	STK32C	10	134038860	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	4172413	134038860	1495887	684	50640										
STK32C	0	genome.wustl.edu	37	chr10	134040317	134040317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctgtggatgatgtgctggCcgcgcaggtagtccagagcc	15	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	134040317	134040317	C	T	SNP	STK32C	ENST00000368625	human	ensembl	69_37n	-1	known	missense	c.665	p.G222D	0.057	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32C	HGNC	ENSG00000165752	72	0	0	47	21	30.43	-	-	-	T	134040317	C	T	134040317	3	4	569	1	0	0	0	0	1	0	0	0	15390	739	26	4	870	4	STK32C	10	134040317	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1457	134040317	1494430	685	50641										
INPP5A	0	genome.wustl.edu	37	chr10	134523913	134523913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctgggaaacaagcccttcCgtgtactcgggaatccggca	12	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	10	134523913	134523913	C	A	SNP	INPP5A	ENST00000342652	human	ensembl	69_37n	1	known	missense	c.514	p.R172S	0.006	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INPP5A	HGNC	ENSG00000068383	303	1	0.33	172	115	40.07	-	-	-	A	134523913	C	A	134523913	3	1	569	1	0	0	0	0	1	0	0	0	7808	639	23	3	630	3	INPP5A	10	134523913	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	483596	134523913	1010834	686	50642										
B4GALNT4	0	genome.wustl.edu	37	chr11	375759	375759	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcggccagatcccagggAtacctttttcctcagtgaga	11	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	375759	375759	A	G	SNP	B4GALNT4	ENST00000329962	human	ensembl	69_37n	1	known	missense	c.971	p.D324G	1.000	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	15	0	0	11	9	45	-	-	-	G	375759	A	G	375759	3	3	569	1	0	0	0	0	1	0	0	0	1273	333	12	5	1009	5	B4GALNT4	11	375759	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09		375759	134630757	687	50643										
ANO9	0	genome.wustl.edu	37	chr11	418575	418575	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggcggcgatgagcttgatGcacaaggccacgtgctagcg	15	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	418575	418575	G	A	SNP	ANO9	ENST00000332826	human	ensembl	69_37n	-1	known	silent	c.2145	p.C715	0.991	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	69	0	0	48	31	39.24	-	-	-	A	418575	G	A	418575	2	1	569	1	0	0	0	0	0	0	0	1	703	1311	46	4		4	ANO9	11	418575	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	42816	418575	134587941	688	50644										
MUC2	0	genome.wustl.edu	37	chr11	1084831	1084831	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacctttgatgggaagtacTacgactttgacggacactgc	10	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	1084831	1084831	T	C	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.2626	p.Y876H	0.955	pfam_VWF_type-D,smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	230	2	0.86	123	96	43.64	-	-	-	C	1084831	T	C	1084831	3	2	569	1	0	0	0	0	1	0	0	0	10047	1522	53	5	2704	5	MUC2	11	1084831	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	666256	1084831	133921685	689	50645										
TRPM5	0	genome.wustl.edu	37	chr11	2434054	2434055	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcgggccctgaggggccctINSgggggggcggcctgaagtcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	2434054	2434055	-	G	INS	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2291_2290	p.Q764fs	0.009:0.011	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	37	0	0	40	10	20	-	-	-	G	2434055	-	G	2434054	7	5	569	1	0	1	1	0	0	0	0	0	16685	1580	55	0	1252	0	TRPM5	11	2434054	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1349223	2434054	132572462	690	50646										
CARS	0	genome.wustl.edu	37	chr11	3023228	3023228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaacttggagtatttgtcgGtttctgacaagaacatctca	8	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	3023228	3023228	G	A	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	missense	c.2333	p.T778I	0.000	NULL	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	178	0	0	113	57	33.53	-	-	-	A	3023228	G	A	3023228	3	1	569	1	0	0	0	0	1	0	0	0	2682	1261	44	4	178	4	CARS	11	3023228	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	589174	3023228	131983288	691	50647										
OR52J3	0	genome.wustl.edu	37	chr11	5068682	5068683	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagtgctctatgtttttactINSaaaaaataagactcttacca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	5068682	5068683	-	A	INS	OR52J3	ENST00000380370	human	ensembl	69_37n	1	known	frame_shift_ins	c.927_928	p.*311fs	0.000:0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52J3	HGNC	ENSG00000205495	50	0	0	47	14	22.95	-	-	-	A	5068683	-	A	5068682	7	5	569	1	0	1	1	0	0	0	0	0	11195	1536	53	0	929	0	OR52J3	11	5068682	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	2045454	5068682	129937834	692	50648										
OR51B5	0	genome.wustl.edu	37	chr11	5363900	5363900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acactatatgttataggattCattagtggagggaacagaaa	10	4	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	5363900	5363900	C	T	SNP	OR51B5	ENST00000300773	human	ensembl	69_37n	-1	known	missense	c.855	p.M285I	0.991	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180	204	0	0	144	69	32.39	-	-	-	T	5363900	C	T	5363900	3	4	569	1	0	0	0	0	1	0	0	0	11164	826	29	2	87	2	OR51B5	11	5363900	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	295218	5363900	129642616	693	50649										
TRIM34	0	genome.wustl.edu	37	chr11	5653667	5653667	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actgtggccacagcctctgcCgagcctgcatcactgtgagc	11	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	5653667	5653667	C	T	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	nonsense	c.1168	p.R390*	0.961	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	185	0	0	160	107	39.34	-	-	-	T	5653667	C	T	5653667	4	4	569	1	0	0	0	0	0	1	0	0	16604	644	23	1	108	1	TRIM34	11	5653667	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	289767	5653667	129352849	694	50650										
OR52N2	0	genome.wustl.edu	37	chr11	5842325	5842325	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgttccattgtgatcaccTatgttgctgcttttttcact	7	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	5842325	5842325	T	C	SNP	OR52N2	ENST00000317037	human	ensembl	69_37n	1	known	missense	c.760	p.Y254H	0.285	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988	529	1	0.19	324	207	38.91	-	-	-	C	5842325	T	C	5842325	3	2	569	1	0	0	0	0	1	0	0	0	11201	1522	53	5	762	5	OR52N2	11	5842325	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	188658	5842325	129164191	695	50651										
TRIM3	0	genome.wustl.edu	37	chr11	6477399	6477399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attcacctttctcccttccaCgactgcctgtgggaagggac	9	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	6477399	6477399	C	T	SNP	TRIM3	ENST00000345851	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479H	0.992	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171	187	0	0	125	73	36.87	-	-	-	T	6477399	C	T	6477399	3	4	569	1	0	0	0	0	1	0	0	0	16600	536	19	1	822	1	TRIM3	11	6477399	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	635074	6477399	128529117	696	50652										
DNHD1	0	genome.wustl.edu	37	chr11	6579372	6579372	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgttggtacccagtggtgtGgatctcactacacttcatcg	10	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	6579372	6579372	G	A	SNP	DNHD1	ENST00000524401	human	ensembl	69_37n	1	known	nonsense	c.89	p.W30*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNHD1	HGNC	ENSG00000179532	115	0	0	104	48	31.37	-	-	-	A	6579372	G	A	6579372	4	1	569	1	0	0	0	0	0	1	0	0	4703	1335	47	4	8946	4	DNHD1	11	6579372	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	101973	6579372	128427144	697	50653										
SYT9	0	genome.wustl.edu	37	chr11	7441852	7441852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaagcccattgcacactggCattccctggtggaggtaaga	13	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	7441852	7441852	C	T	SNP	SYT9	ENST00000318881	human	ensembl	69_37n	1	known	missense	c.1453	p.H485Y	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743	262	0	0	206	125	37.31	-	-	-	T	7441852	C	T	7441852	3	4	569	1	0	0	0	0	1	0	0	0	15573	710	25	4	1475	4	SYT9	11	7441852	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	862480	7441852	127564664	698	50654										
PPFIBP2	0	genome.wustl.edu	37	chr11	7660967	7660967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctcaccttccaataggacaGccctttcttggcggagcaca	8	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	7660967	7660967	G	A	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	missense	c.1241	p.S414N	0.398	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	113	0	0	81	43	34.68	-	-	-	A	7660967	G	A	7660967	3	1	569	1	0	0	0	0	1	0	0	0	12387	971	34	4	1295	4	PPFIBP2	11	7660967	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	219115	7660967	127345549	699	50655										
OR5P3	0	genome.wustl.edu	37	chr11	7846708	7846708	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaacacagacaccaccttgTtctggtcagttgagtagctg	10	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	7846708	7846708	T	C	SNP	OR5P3	ENST00000328375	human	ensembl	69_37n	-1	known	missense	c.812	p.N271S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334	339	0	0	220	129	36.86	-	-	-	C	7846708	T	C	7846708	3	2	569	1	0	0	0	0	1	0	0	0	11252	1725	60	5	126	5	OR5P3	11	7846708	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	185741	7846708	127159808	700	50656										
STK33	0	genome.wustl.edu	37	chr11	8413872	8413872	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgtcctttaatgccatgTgcagcttatgctgctttgga	11	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	8413872	8413872	T	C	SNP	STK33	ENST00000473980	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STK33	HGNC	ENSG00000130413	47	0	0	25	15	37.5	-	-	-	C	8413872	T	C	8413872	1	2	569	0	1	0	0	0	0	0	0	0	15391	1711	59	5		5	STK33	11	8413872	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	567164	8413872	126592644	701	50657										
DENND5A	0	genome.wustl.edu	37	chr11	9165018	9165018	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccgatggactcctggatctGcccagtgttcagctctaata	9	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	9165018	9165018	G	A	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	nonsense	c.3319	p.Q1107*	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	203	0	0	147	84	36.36	-	-	-	A	9165018	G	A	9165018	4	1	569	1	0	0	0	0	0	1	0	0	4472	1328	46	4	560	4	DENND5A	11	9165018	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	751146	9165018	125841498	702	50658										
ZNF143	0	genome.wustl.edu	37	chr11	9501033	9501033	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctataggtgtccattgatggAagtgaaagtgtagcaggtac	13	5	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	9501033	9501033	A	G	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	1	known	silent	c.585	p.G195	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	363	0	0	236	152	39.18	-	-	-	G	9501033	A	G	9501033	2	3	569	1	0	0	0	0	0	0	0	1	17828	233	9	5		5	ZNF143	11	9501033	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	336015	9501033	125505483	703	50659										
GALNTL4	0	genome.wustl.edu	37	chr11	11362441	11362441	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttcagccaccctgagagcGttcctgcggacatgggcggt	13	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	11362441	11362441	G	A	SNP	GALNTL4	ENST00000227756	human	ensembl	69_37n	-1	known	silent	c.1203	p.N401	0.948	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL4	HGNC	ENSG00000110328	333	0	0	245	140	36.27	-	-	-	A	11362441	G	A	11362441	2	1	569	1	0	0	0	0	0	0	0	1	6273	1136	40	1		1	GALNTL4	11	11362441	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1861408	11362441	123644075	704	50660										
TEAD1	0	genome.wustl.edu	37	chr11	12901337	12901337	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcggccactgccattcataAcaagctggggctgcctggga	12	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	12901337	12901337	A	T	SNP	TEAD1	ENST00000361905	human	ensembl	69_37n	1	known	missense	c.368	p.N123I	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD1	HGNC	ENSG00000187079	53	0	0	33	18	35.29	-	-	-	T	12901337	A	T	12901337	3	4	569	1	0	0	0	0	1	0	0	0	15833	43	2	5	427	5	TEAD1	11	12901337	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1538896	12901337	122105179	705	50661										
COPB1	0	genome.wustl.edu	37	chr11	14512112	14512112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttttaaaaagtacctcaccTgatctgcatgaattagcatc	5	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	14512112	14512112	T	C	SNP	COPB1	ENST00000249923	human	ensembl	69_37n	-1	known	missense	c.605	p.Q202R	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_bsu	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_bsu	-	no_errors	COPB1	HGNC	ENSG00000129083	223	0	0	181	93	33.82	-	-	-	C	14512112	T	C	14512112	3	2	569	1	0	0	0	0	1	0	0	0	3758	1594	55	5	2328	5	COPB1	11	14512112	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1610775	14512112	120494404	706	50662										
USH1C	0	genome.wustl.edu	37	chr11	17515664	17515665	+	RNA	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatccttgagatcttctcccINSaaatggctggctgctccctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	17515664	17515665	-	A	INS	USH1C	ENST00000529563	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	USH1C	HGNC	ENSG00000006611	39	0	0	16	8	33.33	-	-	-	A	17515665	-	A	17515664	6	5	569	0	1	1	1	0	0	0	0	0	17131	609	21	0		0	USH1C	11	17515664	RNA	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	3003552	17515664	117490852	707	50663										
LDHA	0	genome.wustl.edu	37	chr11	18425290	18425290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgtctctctgaagactctGcacccagatttagggactga	11	10	3	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	18425290	18425290	G	A	SNP	LDHA	ENST00000541097	human	ensembl	69_37n	1	known	missense	c.250	p.A84T	0.548	NULL	pfam_Lactate/malate_DH_N,prints_L-lactate/malate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333	562	3	0.53	364	215	37.13	-	-	-	A	18425290	G	A	18425290	3	1	569	1	0	0	0	0	1	0	0	0	8752	1306	46	4	751	4	LDHA	11	18425290	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	909626	18425290	116581226	708	50664										
MRGPRX1	0	genome.wustl.edu	37	chr11	18955771	18955772	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccacagagaaccacacatINSaaaaaaatcagccacgcgac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	18955771	18955772	-	A	INS	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	frame_shift_ins	c.561_560	p.L187fs	0.323:0.237	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	868	0	0	664	171	20.48	-	-	-	A	18955772	-	A	18955771	7	5	569	1	0	1	1	0	0	0	0	0	9838	1403	49	0	411	0	MRGPRX1	11	18955771	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	530481	18955771	116050745	709	50665										
MRGPRX1	0	genome.wustl.edu	37	chr11	18956058	18956058	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggattttagagatggtatGggggatactgatgaagctta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	18956058	18956058	G	-	DEL	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	frame_shift_del	c.274	p.H92fs	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	255	0	0	195	47	19.18	-	-	-	-	18956058	G	-	18956058	7	5	569	1	0	1	0	1	0	0	0	0	9838	1348	47	0	698	0	MRGPRX1	11	18956058	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	287	18956058	116050458	710	50666										
DBX1	0	genome.wustl.edu	37	chr11	20177892	20177892	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggcagccgcgggtcccgCaggtgctgggggtcggagga	20	12	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	20177892	20177892	C	T	SNP	DBX1	ENST00000227256	human	ensembl	69_37n	-1	known	silent	c.1017	p.L339	0.976	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DBX1	HGNC	ENSG00000109851	37	0	0	29	12	29.27	-	-	-	T	20177892	C	T	20177892	2	4	569	1	0	0	0	0	0	0	0	1	4291	697	25	4		4	DBX1	11	20177892	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1221834	20177892	114828624	711	50667										
RCN1	0	genome.wustl.edu	37	chr11	32112926	32112926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttccagtacgaccacgagGccttcctgggcaaggaggac	13	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	32112926	32112926	G	A	SNP	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	missense	c.184	p.A62T	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	29	0	0	17	9	33.33	-	-	-	A	32112926	G	A	32112926	3	1	569	1	0	0	0	0	1	0	0	0	13262	1203	42	4	186	4	RCN1	11	32112926	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	11935034	32112926	102893590	712	50668										
PAMR1	0	genome.wustl.edu	37	chr11	35457472	35457472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agggatgcaggatggtgcccGcccactccacttcccagtcc	11	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	35457472	35457472	G	A	SNP	PAMR1	ENST00000278360	human	ensembl	69_37n	-1	known	missense	c.1363	p.R455W	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_EGF-like,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PAMR1	HGNC	ENSG00000149090	117	1	0.84	81	61	42.96	-	-	-	A	35457472	G	A	35457472	3	1	569	1	0	0	0	0	1	0	0	0	11486	1086	38	1	862	1	PAMR1	11	35457472	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3344546	35457472	99549044	713	50669										
API5	0	genome.wustl.edu	37	chr11	43342374	43342374	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgaaatcatgcccagattCgacgtcaagcaattaaagaa	7	8	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	43342374	43342374	C	T	SNP	API5	ENST00000531273	human	ensembl	69_37n	1	known	nonsense	c.235	p.R79*	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	323	0	0	173	120	40.82	-	-	-	T	43342374	C	T	43342374	4	4	569	1	0	0	0	0	0	1	0	0	774	876	31	1	245	1	API5	11	43342374	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7884902	43342374	91664142	714	50670										
TTC17	0	genome.wustl.edu	37	chr11	43411286	43411286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agagacataataaagaagacCcagactgcatcaaagccaag	8	9	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	43411286	43411286	C	T	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	1	known	missense	c.334	p.P112S	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	244	0	0	167	100	37.31	-	-	-	T	43411286	C	T	43411286	3	4	569	1	0	0	0	0	1	0	0	0	16781	623	22	4	344	4	TTC17	11	43411286	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	68912	43411286	91595230	715	50671										
ALX4	0	genome.wustl.edu	37	chr11	44289131	44289131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctgcatctgcccaaaacgCtcccgcttcctccacttggc	7	18	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	44289131	44289131	C	T	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	silent	c.819	p.E273	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	264	1	0.38	194	106	35.22	-	-	-	T	44289131	C	T	44289131	2	4	569	1	0	0	0	0	0	0	0	1	558	796	28	4		4	ALX4	11	44289131	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	877845	44289131	90717385	716	50672										
AMBRA1	0	genome.wustl.edu	37	chr11	46568609	46568609	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagagcgagactccgtctcAaaaaaaaaaaattagaacac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	46568609	46568609	A	-	DEL	AMBRA1	ENST00000524783	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.881	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497	49	0	0	38	25	39.06	-	-	-	-	46568609	A	-	46568609	6	5	569	0	1	1	0	1	0	0	0	0	565	145	5	0		0	AMBRA1	11	46568609	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	2279478	46568609	88437907	717	50673										
C11orf49	0	genome.wustl.edu	37	chr11	47182742	47182745	+	Frame_Shift_Del	DEL	GTAA	GTAA	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatgaagagctggaacggctGtaagtgtcaagtgggaggat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	47182742	47182745	GTAA	-	DEL	C11orf49	ENST00000395460	human	ensembl	69_37n	1	known	frame_shift_del	c.822_825	p.*275fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	121	0	0	122	32	20.78	-	-	-	-	47182745	GTAA	-	47182742	7	5	569	1	0	1	0	1	0	0	0	0	1656	1391	48	0	852	0	C11orf49	11	47182742	Frame_Shift_Del	DEL	GTAA	TCGA-BH-A18G-01A-11D-A12B-09	614133	47182742	87823774	718	50674										
ARFGAP2	0	genome.wustl.edu	37	chr11	47186970	47186970	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccacaaggcaaagcatccccAgcctgggaactgtggagttc	11	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	47186970	47186970	A	G	SNP	ARFGAP2	ENST00000395449	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	194	0	0	121	71	36.98	-	-	-	G	47186970	A	G	47186970	1	3	569	0	1	0	0	0	0	0	0	0	852	203	7	5		5	ARFGAP2	11	47186970	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	4228	47186970	87819546	719	50675										
SPI1	0	genome.wustl.edu	37	chr11	47399861	47399861	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggagtcccggtactcacaGgggggacgaggggaaaccct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	47399861	47399861	G	-	DEL	SPI1	ENST00000227163	human	ensembl	69_37n	-1	known	frame_shift_del	c.44	p.P15fs	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPI1	HGNC	ENSG00000066336	112	0	0	64	38	35.85	-	-	-	-	47399861	G	-	47399861	7	5	569	1	0	1	0	1	0	0	0	0	15140	1014	35	0	791	0	SPI1	11	47399861	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	212891	47399861	87606655	720	50676										
PSMC3	0	genome.wustl.edu	37	chr11	47447428	47447428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgcgcccaccttgatctcaCtgtccagcagccgtgtgcgc	11	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	47447428	47447428	C	T	SNP	PSMC3	ENST00000298852	human	ensembl	69_37n	-1	known	missense	c.149	p.S50N	1.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916	52	0	0	45	6	11.76	-	-	-	T	47447428	C	T	47447428	3	4	569	1	0	0	0	0	1	0	0	0	12767	565	20	4	1214	4	PSMC3	11	47447428	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	47567	47447428	87559088	721	50677										
KBTBD4	0	genome.wustl.edu	37	chr11	47594883	47594883	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagtccagatcattctcctCcccccctagtaagtagatga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	47594883	47594883	C	-	DEL	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	frame_shift_del	c.1204	p.E402fs	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	203	0	0	158	79	32.78	-	-	-	-	47594883	C	-	47594883	7	5	569	1	0	1	0	1	0	0	0	0	8049	864	30	0	404	0	KBTBD4	11	47594883	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	147455	47594883	87411633	722	50678										
OR4A15	0	genome.wustl.edu	37	chr11	55135957	55135957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctccctttctgtggacccAatgtcattgacaacttcctg	7	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	55135957	55135957	A	G	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.598	p.N200D	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	481	0	0	320	200	38.31	-	-	-	G	55135957	A	G	55135957	3	3	569	1	0	0	0	0	1	0	0	0	11113	130	5	5	600	5	OR4A15	11	55135957	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7541074	55135957	79870559	723	50679										
OR8H2	0	genome.wustl.edu	37	chr11	55872855	55872855	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttgggtactgctgaatgtTaccttctctcctcaatggcc	8	12	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	55872855	55872855	T	C	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	1	known	missense	c.337	p.Y113H	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	464	0	0	337	223	39.82	-	-	-	C	55872855	T	C	55872855	3	2	569	1	0	0	0	0	1	0	0	0	11311	1754	61	5	339	5	OR8H2	11	55872855	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	736898	55872855	79133661	724	50680										
OR8H1	0	genome.wustl.edu	37	chr11	56057775	56057775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggttttaaataagtaaaaAtcatagttccataaaagatg	6	3	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	56057775	56057775	A	C	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	missense	c.764	p.I255S	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	329	1	0.3	200	121	37.69	-	-	-	C	56057775	A	C	56057775	3	2	569	1	0	0	0	0	1	0	0	0	11310	101	4	5	173	5	OR8H1	11	56057775	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	184920	56057775	78948741	725	50681										
OR8H1	0	genome.wustl.edu	37	chr11	56058343	56058343	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actgaggtcaataaatgacaAgtgagtaaggaaaaaataca	9	4	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	56058343	56058343	A	G	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	silent	c.196	p.L66	0.046	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	675	0	0	440	239	35.2	-	-	-	G	56058343	A	G	56058343	2	3	569	1	0	0	0	0	0	0	0	1	11310	69	3	5		5	OR8H1	11	56058343	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	568	56058343	78948173	726	50682										
OR8K1	0	genome.wustl.edu	37	chr11	56114010	56114010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtttgtgtcactatttctcAcaattaagttatttaaactg	5	7	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	56114010	56114010	A	C	SNP	OR8K1	ENST00000279783	human	ensembl	69_37n	1	known	missense	c.496	p.T166P	0.007	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	433	0	0	288	142	33.02	-	-	-	C	56114010	A	C	56114010	3	2	569	1	0	0	0	0	1	0	0	0	11316	159	6	5	498	5	OR8K1	11	56114010	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	55667	56114010	78892506	727	50683										
OR5M11	0	genome.wustl.edu	37	chr11	56310647	56310647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggtaaacaaccagaaacagCacaaaaagcagagactggag	10	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	56310647	56310647	C	T	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	silent	c.87	p.V29	0.062	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	184	1	0.54	147	72	32.88	-	-	-	T	56310647	C	T	56310647	2	4	569	1	0	0	0	0	0	0	0	1	11247	697	25	4		4	OR5M11	11	56310647	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	196637	56310647	78695869	728	50684										
MPEG1	0	genome.wustl.edu	37	chr11	58979700	58979700	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtcctcctgaataagagcAgccccagcgtcgacactggt	11	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	58979700	58979700	A	G	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	silent	c.639	p.A213	0.055	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	147	0	0	115	59	33.91	-	-	-	G	58979700	A	G	58979700	2	3	569	1	0	0	0	0	0	0	0	1	9795	175	7	5		5	MPEG1	11	58979700	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2669053	58979700	76026816	729	50685										
PGA5	0	genome.wustl.edu	37	chr11	61017472	61017472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtaccccgtgccacccagtGcctacatcctgcaggtgagg	11	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	61017472	61017472	G	A	SNP	PGA5	ENST00000312403	human	ensembl	69_37n	1	known	missense	c.1003	p.A335T	0.964	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA5	HGNC	ENSG00000256713	202	0	0	118	92	43.19	-	-	-	A	61017472	G	A	61017472	3	1	569	1	0	0	0	0	1	0	0	0	11846	1319	46	4	1033	4	PGA5	11	61017472	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2037772	61017472	73989044	730	50686										
DDB1	0	genome.wustl.edu	37	chr11	61081077	61081077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctatagatgacagtggggcGgtcagaacaagcaaagacgt	14	7	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	61081077	61081077	G	A	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.1963	p.R655C	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	360	0	0	241	144	37.21	-	-	-	A	61081077	G	A	61081077	3	1	569	1	0	0	0	0	1	0	0	0	4354	1116	39	1	1507	1	DDB1	11	61081077	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	63605	61081077	73925439	731	50687										
CYBASC3	0	genome.wustl.edu	37	chr11	61120477	61120477	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaactgaagaaaagcttctcAttaatgcccgaaatgacgga	8	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	61120477	61120477	A	G	SNP	CYBASC3	ENST00000426130	human	ensembl	69_37n	-1	known	silent	c.579	p.N193	0.517	pfam_Cyt_b561_euk,pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBASC3	HGNC	ENSG00000162144	160	1	0.62	112	65	36.72	-	-	-	G	61120477	A	G	61120477	2	3	569	1	0	0	0	0	0	0	0	1	4163	214	8	5		5	CYBASC3	11	61120477	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	39400	61120477	73886039	732	50688										
INCENP	0	genome.wustl.edu	37	chr11	61906201	61906201	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcagttctgagcagaaggaaCcccccgaggaggctgagcct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	61906201	61906201	C	-	DEL	INCENP	ENST00000394818	human	ensembl	69_37n	1	known	frame_shift_del	c.1132	p.E380fs	0.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	107	0	0	77	44	36.07	-	-	-	-	61906201	C	-	61906201	7	5	569	1	0	1	0	1	0	0	0	0	7787	507	18	0	1150	0	INCENP	11	61906201	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	785724	61906201	73100315	733	50689										
LGALS12	0	genome.wustl.edu	37	chr11	63283151	63283151	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagaagaaactgatctcagCccccttcctcttttaccccc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	63283151	63283151	C	-	DEL	LGALS12	ENST00000340246	human	ensembl	69_37n	1	known	frame_shift_del	c.833	p.F280fs	0.994	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS12	HGNC	ENSG00000133317	115	1	0.85	67	41	37.61	-	-	-	-	63283151	C	-	63283151	7	5	569	1	0	1	0	1	0	0	0	0	8793	739	26	0	863	0	LGALS12	11	63283151	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1376950	63283151	71723365	734	50690										
KCNK4	0	genome.wustl.edu	37	chr11	64064700	64064700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggcaggggtcggggaccgGctgggctcctccctgcgcca	17	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	64064700	64064700	G	A	SNP	KCNK4	ENST00000538767	human	ensembl	69_37n	1	putative	missense	c.224	p.G75D	0.096	NULL	NULL	-	no_errors	KCNK4	HGNC	ENSG00000182450	52	0	0	20	17	45.95	-	-	-	A	64064700	G	A	64064700	3	1	569	1	0	0	0	0	1	0	0	0	8122	1190	42	4	433	4	KCNK4	11	64064700	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	781549	64064700	70941816	735	50691										
PRDX5	0	genome.wustl.edu	37	chr11	64087315	64087315	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgctgtttggagttcctgGggccttcacccctggatgtt	13	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	64087315	64087315	G	T	SNP	PRDX5	ENST00000265462	human	ensembl	69_37n	1	known	missense	c.281	p.G94V	1.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432	261	0	0	144	139	49.12	-	-	-	T	64087315	G	T	64087315	3	4	569	1	0	0	0	0	1	0	0	0	12549	1232	43	4	287	4	PRDX5	11	64087315	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	22615	64087315	70919201	736	50692										
NRXN2	0	genome.wustl.edu	37	chr11	64390403	64390403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcgcaggtgaccctcagtcCgcacattggggtcgctctcg	14	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	64390403	64390403	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.3995	p.R1332Q	1.000	pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	67	0	0	41	24	36.92	-	-	-	T	64390403	C	T	64390403	3	4	569	1	0	0	0	0	1	0	0	0	10739	652	23	1	1155	1	NRXN2	11	64390403	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	303088	64390403	70616113	737	50693										
MEN1	0	genome.wustl.edu	37	chr11	64573679	64573679	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggaagaaaggacaggctgCaggccctagtagggggatcc	18	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	64573679	64573679	C	T	SNP	MEN1	ENST00000478548	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEN1	HGNC	ENSG00000133895	144	0	0	83	63	42.86	-	-	-	T	64573679	C	T	64573679	1	4	569	0	1	0	0	0	0	0	0	0	9543	725	25	4		4	MEN1	11	64573679	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	183276	64573679	70432837	738	50694										
EHD1	0	genome.wustl.edu	37	chr11	64627634	64627634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acacccgcatcagctgctgcGtctcgatctggtctgccttg	10	15	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	64627634	64627634	G	A	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	missense	c.677	p.T226M	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	208	0	0	136	80	36.87	-	-	-	A	64627634	G	A	64627634	3	1	569	1	0	0	0	0	1	0	0	0	5012	1145	40	1	939	1	EHD1	11	64627634	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	53955	64627634	70378882	739	50695										
EHBP1L1	0	genome.wustl.edu	37	chr11	65346593	65346593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggacccgtcggaaccgacGcatctgctccaaggtgggga	14	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	65346593	65346593	G	A	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.149	p.R50H	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	49	0	0	42	38	47.5	-	-	-	A	65346593	G	A	65346593	3	1	569	1	0	0	0	0	1	0	0	0	5011	1087	38	1	155	1	EHBP1L1	11	65346593	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	718959	65346593	69659923	740	50696										
MAP3K11	0	genome.wustl.edu	37	chr11	65365835	65365835	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgccctgcagtcctgggggCccccctggaaggggttggca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	65365835	65365835	C	-	DEL	MAP3K11	ENST00000309100	human	ensembl	69_37n	-1	known	frame_shift_del	c.2471	p.G824fs	0.196	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327	66	0	0	31	21	39.62	-	-	-	-	65365835	C	-	65365835	7	5	569	1	0	1	0	1	0	0	0	0	9316	739	26	0	76	0	MAP3K11	11	65365835	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	19242	65365835	69640681	741	50697										
SPTBN2	0	genome.wustl.edu	37	chr11	66460468	66460468	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgctcgtggtcaatcatgTcctggctgctggccgccagc	14	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	66460468	66460468	T	C	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.4958	p.D1653G	0.977	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	68	0	0	57	28	32.94	-	-	-	C	66460468	T	C	66460468	3	2	569	1	0	0	0	0	1	0	0	0	15211	1667	58	5	2270	5	SPTBN2	11	66460468	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1094633	66460468	68546048	742	50698										
C11orf80	0	genome.wustl.edu	37	chr11	66529727	66529727	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccggccgcagaacacgcgCgcaaactgagcagcctgaag	13	15	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	66529727	66529727	C	T	SNP	C11orf80	ENST00000527368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C11orf80	HGNC	ENSG00000173715	34	0	0	9	9	50	-	-	-	T	66529727	C	T	66529727	1	4	569	0	1	0	0	0	0	0	0	0	1675	783	27	1		1	C11orf80	11	66529727	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	69259	66529727	68476789	743	50699										
PC	0	genome.wustl.edu	37	chr11	66619987	66619987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctttttgagatcgtgggtgCgcacacgagtggccagcagt	14	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	66619987	66619987	C	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.1748	p.R583H	1.000	pfam_PYR_CT,pirsf_Pyruv_COase,pfscan_PYR_CT,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	89	0	0	41	25	37.88	-	-	-	T	66619987	C	T	66619987	3	4	569	1	0	0	0	0	1	0	0	0	11570	768	27	1	1824	1	PC	11	66619987	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	90260	66619987	68386529	744	50700										
SSH3	0	genome.wustl.edu	37	chr11	67072316	67072316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacaatgatgatgcagcagaGgccagttctgagccaacaga	12	9	1	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	67072316	67072316	G	T	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	missense	c.177	p.E59D	0.015	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	115	0	0	67	31	31.63	-	-	-	T	67072316	G	T	67072316	3	4	569	1	0	0	0	0	1	0	0	0	15277	991	35	4	187	4	SSH3	11	67072316	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	452329	67072316	67934200	745	50701										
CORO1B	0	genome.wustl.edu	37	chr11	67209552	67209552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgggtaggccttgtcaatgCggcccgtctgtgggcacgag	16	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	67209552	67209552	C	T	SNP	CORO1B	ENST00000341356	human	ensembl	69_37n	-1	known	missense	c.209	p.R70H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725	27	0	0	11	10	47.62	-	-	-	T	67209552	C	T	67209552	3	4	569	1	0	0	0	0	1	0	0	0	3784	768	27	1	1296	1	CORO1B	11	67209552	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	137236	67209552	67796964	746	50702										
CDK2AP2	0	genome.wustl.edu	37	chr11	67274438	67274438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgtgcgggcgttccgctctGtctctgccaggcactctctg	12	15	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	67274438	67274438	G	A	SNP	CDK2AP2	ENST00000301488	human	ensembl	69_37n	-1	known	missense	c.359	p.T120I	1.000	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	-	no_errors	CDK2AP2	HGNC	ENSG00000167797	81	0	0	46	28	37.84	-	-	-	A	67274438	G	A	67274438	3	1	569	1	0	0	0	0	1	0	0	0	3168	1377	48	4	25	4	CDK2AP2	11	67274438	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	64886	67274438	67732078	747	50703										
SUV420H1	0	genome.wustl.edu	37	chr11	67925677	67925677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcaatttgggaatcccagaGttattttctaggattaactg	9	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	67925677	67925677	G	T	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.2136	p.N712K	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	453	0	0	315	143	31.22	-	-	-	T	67925677	G	T	67925677	3	4	569	1	0	0	0	0	1	0	0	0	15505	1020	36	4	525	4	SUV420H1	11	67925677	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	651239	67925677	67080839	748	50704										
SHANK2	0	genome.wustl.edu	37	chr11	70742676	70742676	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgctattatggccacctgCaaagtgaaaatcacattaag	7	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	70742676	70742676	C	T	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	splice_site	c.1108-1	e17-1	0.156	-	-	-	no_errors	SHANK2	HGNC	ENSG00000162105	564	0	0	366	243	39.9	-	-	-	T	70742676	C	T	70742676	5	4	569	1	0	0	0	0	0	0	1	0	14354	724	25	4	4598	4	SHANK2	11	70742676	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2816999	70742676	64263840	749	50705										
NADSYN1	0	genome.wustl.edu	37	chr11	71185449	71185449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcctttttcagaacggtggGatttacttgctggccaacca	9	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	71185449	71185449	G	A	SNP	NADSYN1	ENST00000525200	human	ensembl	69_37n	1	known	missense	c.575	p.G192E	0.863	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	168	0	0	107	74	40.88	-	-	-	A	71185449	G	A	71185449	3	1	569	1	0	0	0	0	1	0	0	0	10210	1161	41	2	709	2	NADSYN1	11	71185449	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	442773	71185449	63821067	750	50706										
KRTAP5-9	0	genome.wustl.edu	37	chr11	71259915	71259915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgtgggggctccaagggagGctgtggttcttgtggctgct	18	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	71259915	71259915	G	A	SNP	KRTAP5-9	ENST00000528743	human	ensembl	69_37n	1	known	missense	c.212	p.G71D	0.764	NULL	NULL	-	no_errors	KRTAP5-9	HGNC	ENSG00000254997	457	2	0.43	273	135	33.01	-	-	-	A	71259915	G	A	71259915	3	1	569	1	0	0	0	0	1	0	0	0	8622	1203	42	4	214	4	KRTAP5-9	11	71259915	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	74466	71259915	63746601	751	50707										
ARAP1	0	genome.wustl.edu	37	chr11	72422518	72422518	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgatcagtatccagtctcAcccatcgtttctgatagatg	9	10	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	72422518	72422518	A	G	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.1049	p.V350A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	167	0	0	108	67	38.07	-	-	-	G	72422518	A	G	72422518	3	3	569	1	0	0	0	0	1	0	0	0	840	159	6	5	3415	5	ARAP1	11	72422518	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1162603	72422518	62583998	752	50708										
C2CD3	0	genome.wustl.edu	37	chr11	73753145	73753145	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaggacaaaggtgatgtggTcagtttgtcatcacatggca	14	6	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	73753145	73753145	T	C	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.5614	p.T1872A	0.089	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	470	0	0	308	177	36.42	-	-	-	C	73753145	T	C	73753145	3	2	569	1	0	0	0	0	1	0	0	0	2174	1667	58	5	289	5	C2CD3	11	73753145	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1330627	73753145	61253371	753	50709										
LRRC32	0	genome.wustl.edu	37	chr11	76372553	76372553	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacgagaccttcttgtccacCtggggaggggtagggtgggg	18	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	76372553	76372553	C	A	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	splice_site	c.85-1	e2-1	1.000	-	-	-	no_errors	LRRC32	HGNC	ENSG00000137507	75	0	0	41	34	45.33	-	-	-	A	76372553	C	A	76372553	5	1	569	1	0	0	0	0	0	0	1	0	9053	695	24	4	1908	4	LRRC32	11	76372553	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2619408	76372553	58633963	754	50710										
ODZ4	0	genome.wustl.edu	37	chr11	78440505	78440505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ataggacaggtctggggctgCagcgaaccacttcctgaaga	13	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	78440505	78440505	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.3322	p.A1108T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	156	0	0	110	82	42.49	-	-	-	T	78440505	C	T	78440505	3	4	569	1	0	0	0	0	1	0	0	0	10910	710	25	4	5039	4	ODZ4	11	78440505	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2067952	78440505	56566011	755	50711										
SYTL2	0	genome.wustl.edu	37	chr11	85420387	85420388	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttacgggtctgaacgctgINStttttttacatccgctgctg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	85420387	85420388	-	T	INS	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4525_4524	p.Q1508fs	1.000:1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	129	0	0	96	59	38.06	-	-	-	T	85420388	-	T	85420387	7	5	569	1	0	1	1	0	0	0	0	0	15575	1386	48	0	845	0	SYTL2	11	85420387	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	6979882	85420387	49586129	756	50712										
FAT3	0	genome.wustl.edu	37	chr11	92088179	92088179	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catgatccagatcttggactGgggggtcaagtgcgctattc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	92088179	92088179	G	-	DEL	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	frame_shift_del	c.2901	p.G969fs	0.985	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	175	0	0	113	75	39.27	-	-	-	-	92088179	G	-	92088179	7	5	569	1	0	1	0	1	0	0	0	0	5737	1335	47	0	2903	0	FAT3	11	92088179	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	6667792	92088179	42918337	757	50713										
MAML2	0	genome.wustl.edu	37	chr11	96074878	96074878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtctgagctctcggccctaCctcgttcatatcgtccttca	8	15	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	96074878	96074878	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	missense	c.182	p.G61D	0.999	pfam_Neuroggenic_mastermind-like_N	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	57	0	0	40	30	42.86	-	-	-	T	96074878	C	T	96074878	3	4	569	1	0	0	0	0	1	0	0	0	9277	507	18	4	3308	4	MAML2	11	96074878	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3986699	96074878	38931638	758	50714										
ALKBH8	0	genome.wustl.edu	37	chr11	107393128	107393128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaaaaactccacaatgtgcGgccaaggggtatgtcttgtg	11	9	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	107393128	107393128	G	A	SNP	ALKBH8	ENST00000417449	human	ensembl	69_37n	-1	known	missense	c.1193	p.P398L	1.000	pfam_Methyltransferase-rel	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760	416	0	0	287	147	33.79	-	-	-	A	107393128	G	A	107393128	3	1	569	1	0	0	0	0	1	0	0	0	533	1116	39	1	822	1	ALKBH8	11	107393128	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	11318250	107393128	27613388	759	50715										
ATM	0	genome.wustl.edu	37	chr11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagatgaccaagaatgcaaaCgaaatctcaggtgagcagta	10	8	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	108235935	108235935	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	nonsense	c.8977	p.R2993*	1.000	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	300	1	0.33	217	124	36.26	-	-	-	T	108235935	C	T	108235935	4	4	569	1	0	0	0	0	0	1	0	0	1113	528	19	1	9219	1	ATM	11	108235935	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	842807	108235935	26770581	760	50716										
C11orf71	0	genome.wustl.edu	37	chr11	114270753	114270753	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgcagcacacttcttaggaGatcgggttcaacggcaggga	13	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	114270753	114270753	G	T	SNP	C11orf71	ENST00000325636	human	ensembl	69_37n	-1	known	missense	c.301	p.L101I	0.011	NULL	NULL	-	no_errors	C11orf71	HGNC	ENSG00000180425	80	0	0	61	22	26.51	-	-	-	T	114270753	G	T	114270753	3	4	569	1	0	0	0	0	1	0	0	0	1671	942	33	2	150	2	C11orf71	11	114270753	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6034818	114270753	20735763	761	50717										
APOA1	0	genome.wustl.edu	37	chr11	116707832	116707832	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactcgatcccaggggctctGggggggttcatcttgctgcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	116707832	116707832	G	-	DEL	APOA1	ENST00000236850	human	ensembl	69_37n	-1	known	frame_shift_del	c.85	p.Q29fs	0.896	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137	103	0	0	61	37	36.63	-	-	-	-	116707832	G	-	116707832	7	5	569	1	0	1	0	1	0	0	0	0	782	1357	47	0	726	0	APOA1	11	116707832	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	2437079	116707832	18298684	762	50718										
TAGLN	0	genome.wustl.edu	37	chr11	117075065	117075065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctacggacgacctcggcagaTcatcagttagagcggagagg	14	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	117075065	117075065	T	C	SNP	TAGLN	ENST00000392951	human	ensembl	69_37n	1	known	missense	c.596	p.I199T	1.000	pfam_Calponin_repeat,pfscan_Calponin_repeat	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Transgelin	-	no_errors	TAGLN	HGNC	ENSG00000149591	89	0	0	62	33	34.74	-	-	-	C	117075065	T	C	117075065	3	2	569	1	0	0	0	0	1	0	0	0	15630	1435	50	5	610	5	TAGLN	11	117075065	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	367233	117075065	17931451	763	50719										
RNF214	0	genome.wustl.edu	37	chr11	117150623	117150623	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttggtttcttatcttacaGagaggtgtgggaaatggaac	12	5	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	117150623	117150623	G	C	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	splice_site	c.960-1	e6-1	1.000	-	-	-	no_errors	RNF214	HGNC	ENSG00000167257	568	0	0	371	214	36.58	-	-	-	C	117150623	G	C	117150623	5	2	569	1	0	0	0	0	0	0	1	0	13564	956	33	2	981	2	RNF214	11	117150623	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	75558	117150623	17855893	764	50720										
ATP5L	0	genome.wustl.edu	37	chr11	118279788	118279788	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggagagattataggcaagcGgggcatcattggctatgatg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	118279788	118279788	G	-	DEL	ATP5L	ENST00000300688	human	ensembl	69_37n	1	known	frame_shift_del	c.287	p.G97fs	1.000	pfam_ATPase_F0-cplx_gsu_mt,pirsf_ATP-Synthase_su_G_mt_met	pfam_ATPase_F0-cplx_gsu_mt,pirsf_ATP-Synthase_su_G_mt_met	-	no_errors	ATP5L	HGNC	ENSG00000167283	412	0	0	316	122	27.17	-	-	-	-	118279788	G	-	118279788	7	5	569	1	0	1	0	1	0	0	0	0	1164	1116	39	0	297	0	ATP5L	11	118279788	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	1129165	118279788	16726728	765	50721										
VPS11	0	genome.wustl.edu	37	chr11	118942364	118942364	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttggacacccatggttgtgGcctgcgctgctcagccctaa	12	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	118942364	118942364	G	A	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	317	0	0	263	154	36.84	-	-	-	A	118942364	G	A	118942364	1	1	569	0	1	0	0	0	0	0	0	0	17285	1203	42	4		4	VPS11	11	118942364	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	662576	118942364	16064152	766	50722										
RNF26	0	genome.wustl.edu	37	chr11	119206924	119206924	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggaggagcctccaggtggGcaagacccttggaaattgct	15	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	119206924	119206924	G	A	SNP	RNF26	ENST00000311413	human	ensembl	69_37n	1	known	silent	c.1092	p.G364	0.507	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456	138	0	0	87	56	39.16	-	-	-	A	119206924	G	A	119206924	2	1	569	1	0	0	0	0	0	0	0	1	13572	1190	42	4		4	RNF26	11	119206924	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	264560	119206924	15799592	767	50723										
HSPA8	0	genome.wustl.edu	37	chr11	122929470	122929470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acacctcggggtgcaggaggTatgcctgtgagttcaaactt	13	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	122929470	122929470	T	C	SNP	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	missense	c.1392	p.I464M	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	272	0	0	166	118	41.11	-	-	-	C	122929470	T	C	122929470	3	2	569	1	0	0	0	0	1	0	0	0	7469	1628	57	5	560	5	HSPA8	11	122929470	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3722546	122929470	12077046	768	50724										
SLC37A2	0	genome.wustl.edu	37	chr11	124949079	124949079	+	Missense_Mutation	SNP	C	C	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgctcagtggccttttcaCctcgctctttggcctgggat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	124949079	124949079	C	T	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	missense	c.386	p.T129I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	249	0	0	172	106	38.13	-	-	-	T	124949079	C	T	124949079	3	4	569	1	0	0	0	0	1	0	0	0	14687	507	18	4	404	4	SLC37A2	11	124949079	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2019609	124949079	10057437	769	50725	422	2								
SLC37A2	0	genome.wustl.edu	37	chr11	124949085	124949085	+	Missense_Mutation	SNP	T	T	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtggccttttcacctcgcTctttggcctgggatatttct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	124949085	124949085	T	A	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	missense	c.392	p.L131H	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	261	0	0	172	107	38.21	-	-	-	A	124949085	T	A	124949085	3	1	569	1	0	0	0	0	1	0	0	0	14687	1551	54	5	410	5	SLC37A2	11	124949085	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6	124949085	10057431	770	50726	422	2								
FOXRED1	0	genome.wustl.edu	37	chr11	126145284	126145284	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggggcttcggcgaaaggtcCagtccttgggagtccttttc	14	10	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	126145284	126145284	C	T	SNP	FOXRED1	ENST00000263578	human	ensembl	69_37n	1	known	nonsense	c.694	p.Q232*	0.507	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074	320	0	0	219	146	40	-	-	-	T	126145284	C	T	126145284	4	4	569	1	0	0	0	0	0	1	0	0	6081	595	21	4	716	4	FOXRED1	11	126145284	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1196199	126145284	8861232	771	50727										
PRDM10	0	genome.wustl.edu	37	chr11	129785682	129785682	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagcgggtcggagcttccgaAtgctcggtgggagctctgct	16	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	129785682	129785682	A	G	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.2411	p.I804T	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	207	0	0	154	84	35.29	-	-	-	G	129785682	A	G	129785682	3	3	569	1	0	0	0	0	1	0	0	0	12532	101	4	5	1095	5	PRDM10	11	129785682	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3640398	129785682	5220834	772	50728										
ADAMTS15	0	genome.wustl.edu	37	chr11	130342942	130342942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccccctttcccccgccagGcatggctacaatttcgtggt	9	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	11	130342942	130342942	G	A	SNP	ADAMTS15	ENST00000299164	human	ensembl	69_37n	1	known	missense	c.2079	p.M693I	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	65	0	0	37	12	24.49	-	-	-	A	130342942	G	A	130342942	3	1	569	1	0	0	0	0	1	0	0	0	260	1217	42	4	2109	4	ADAMTS15	11	130342942	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	557260	130342942	4663574	773	50729										
WNK1	0	genome.wustl.edu	37	chr12	992227	992227	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagatagcaacaattatggTacgtctgcatttggagttct	11	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	992227	992227	T	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	splice_site	c.4983+2	e17+2	1.000	-	-	-	no_errors	WNK1	HGNC	ENSG00000060237	256	1	0.39	161	77	32.35	-	-	-	C	992227	T	C	992227	5	2	569	1	0	0	0	0	0	0	1	0	17474	1652	57	5	5051	5	WNK1	12	992227	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09		992227	132859668	774	50730										
WNK1	0	genome.wustl.edu	37	chr12	1005583	1005583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagaaagaaggaccagtggCatctcctccttttatggatt	9	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	1005583	1005583	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.7424	p.A2475V	0.023	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	197	0	0	133	86	39.09	-	-	-	T	1005583	C	T	1005583	3	4	569	1	0	0	0	0	1	0	0	0	17474	710	25	4	7526	4	WNK1	12	1005583	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	13356	1005583	132846312	775	50731										
ERC1	0	genome.wustl.edu	37	chr12	1213949	1213949	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtttgagaatgctcctgatTctgccaaaacaaaagctctg	9	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	1213949	1213949	T	C	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	1	known	missense	c.1120	p.S374P	0.994	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	337	0	0	264	160	37.74	-	-	-	C	1213949	T	C	1213949	3	2	569	1	0	0	0	0	1	0	0	0	5247	1783	62	5	1130	5	ERC1	12	1213949	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	208366	1213949	132637946	776	50732										
CACNA1C	0	genome.wustl.edu	37	chr12	2775892	2775892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtggtgaccctcctccggCggattcagccgccactaggt	12	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	2775892	2775892	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.4567	p.R1523W	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	119	0	0	83	45	35.16	-	-	-	T	2775892	C	T	2775892	3	4	569	1	0	0	0	0	1	0	0	0	2565	759	27	1	5039	1	CACNA1C	12	2775892	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1561943	2775892	131076003	777	50733										
EFCAB4B	0	genome.wustl.edu	37	chr12	3757660	3757660	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agactggtccttccgaccccAggcttctgggaggtgctctc	12	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	3757660	3757660	A	G	SNP	EFCAB4B	ENST00000252322	human	ensembl	69_37n	-1	known	missense	c.1166	p.L389P	0.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB4B	HGNC	ENSG00000130038	50	0	0	39	12	23.53	-	-	-	G	3757660	A	G	3757660	3	3	569	1	0	0	0	0	1	0	0	0	4972	188	7	5	1261	5	EFCAB4B	12	3757660	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	981768	3757660	130094235	778	50734										
EFCAB4B	0	genome.wustl.edu	37	chr12	3757717	3757717	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caccgacgcaccttaggaaaTccagctgcttgaggagcccg	11	14	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	3757717	3757717	T	C	SNP	EFCAB4B	ENST00000440314	human	ensembl	69_37n	-1	known	missense	c.1109	p.D370G	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_EF_hand_Ca-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_HAND_2,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038	47	0	0	28	19	40.43	-	-	-	C	3757717	T	C	3757717	3	2	569	1	0	0	0	0	1	0	0	0	4972	1435	50	5	1318	5	EFCAB4B	12	3757717	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	57	3757717	130094178	779	50735										
FGF6	0	genome.wustl.edu	37	chr12	4554553	4554553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctccagctagcccggcgcGagacctggacagcagggtgc	14	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	4554553	4554553	G	A	SNP	FGF6	ENST00000228837	human	ensembl	69_37n	-1	known	missense	c.184	p.R62C	0.990	superfamily_Cytokine_IL1-like	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF6	HGNC	ENSG00000111241	87	0	0	43	27	38.03	-	-	-	A	4554553	G	A	4554553	3	1	569	1	0	0	0	0	1	0	0	0	5902	1058	37	1	454	1	FGF6	12	4554553	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	796836	4554553	129297342	780	50736										
GALNT8	0	genome.wustl.edu	37	chr12	4870217	4870217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctacgccttggatctcaccGctgccttgaagcgcaatgct	9	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	4870217	4870217	G	A	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	missense	c.1267	p.A423T	0.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	308	2	0.64	225	117	34.21	-	-	-	A	4870217	G	A	4870217	3	1	569	1	0	0	0	0	1	0	0	0	6269	1087	38	1	1293	1	GALNT8	12	4870217	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	315664	4870217	128981678	781	50737										
KCNA6	0	genome.wustl.edu	37	chr12	4920419	4920419	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggctgacgatgacgattcGctttttcccagcatcccgga	11	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	4920419	4920419	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	silent	c.1212	p.S404	0.003	pfam_Ion_trans_dom,pfam_Ion_trans_2	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	322	0	0	192	122	38.61	-	-	-	A	4920419	G	A	4920419	2	1	569	1	0	0	0	0	0	0	0	1	8061	1074	38	1		1	KCNA6	12	4920419	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	50202	4920419	128931476	782	50738										
KCNA5	0	genome.wustl.edu	37	chr12	5153915	5153915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtgttcgcggacgagatacGcttctaccagctgggggacg	15	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	5153915	5153915	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.602	p.R201H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	74	0	0	41	32	43.84	-	-	-	A	5153915	G	A	5153915	3	1	569	1	0	0	0	0	1	0	0	0	8060	1087	38	1	604	1	KCNA5	12	5153915	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	233496	5153915	128697980	783	50739										
VWF	0	genome.wustl.edu	37	chr12	6143979	6143979	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctgtgcagttccacttccGgtcctgacagacactaggag	11	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	6143979	6143979	G	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.2560	p.R854	1.000	pirsf_VWF,smart_VWC_out,smart_VWF_C	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	360	0	0	195	127	39.44	-	-	-	T	6143979	G	T	6143979	2	4	569	1	0	0	0	0	0	0	0	1	17343	1115	39	3		3	VWF	12	6143979	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	990064	6143979	127707916	784	50740										
SCNN1A	0	genome.wustl.edu	37	chr12	6457217	6457217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaagtgggaaggaggggagGatgccagggtggaggctacc	21	5	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	6457217	6457217	G	A	SNP	SCNN1A	ENST00000358945	human	ensembl	69_37n	-1	known	missense	c.1898	p.S633F	0.098	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1A	HGNC	ENSG00000111319	45	0	0	31	17	35.42	-	-	-	A	6457217	G	A	6457217	3	1	569	1	0	0	0	0	1	0	0	0	14015	1174	41	2	181	2	SCNN1A	12	6457217	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	313238	6457217	127394678	785	50741										
LTBR	0	genome.wustl.edu	37	chr12	6497483	6497483	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctgtctgggttgcccaggGatctggaaagctcttccttc	11	12	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	6497483	6497483	G	A	SNP	LTBR	ENST00000541005	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LTBR	HGNC	ENSG00000111321	134	0	0	70	45	39.13	-	-	-	A	6497483	G	A	6497483	1	1	569	0	1	0	0	0	0	0	0	0	9143	1189	41	2		2	LTBR	12	6497483	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	40266	6497483	127354412	786	50742										
ZNF384	0	genome.wustl.edu	37	chr12	6787583	6787583	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctgagctgatgatgctgtGgtcacaagagagcctgaggg	16	7	2	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	6787583	6787583	G	A	SNP	ZNF384	ENST00000361959	human	ensembl	69_37n	-1	known	silent	c.396	p.T132	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746	180	0	0	82	58	41.43	-	-	-	A	6787583	G	A	6787583	2	1	569	1	0	0	0	0	0	0	0	1	17971	1335	47	4		4	ZNF384	12	6787583	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	290100	6787583	127064312	787	50743										
CD4	0	genome.wustl.edu	37	chr12	6924043	6924043	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaaggggtaaaaacatacaGggggggaagaccctctccgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	6924043	6924043	G	-	DEL	CD4	ENST00000011653	human	ensembl	69_37n	1	known	frame_shift_del	c.492	p.K167fs	0.000	pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	149	0	0	56	97	60.62	-	-	-	-	6924043	G	-	6924043	7	5	569	1	0	1	0	1	0	0	0	0	3043	991	35	0	506	0	CD4	12	6924043	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	136460	6924043	126927852	788	50744										
ATN1	0	genome.wustl.edu	37	chr12	7050587	7050587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttctgccccgatgtcagcaGctcatcagctgcaggccatg	10	14	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	7050587	7050587	G	A	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.3409	p.A1137T	1.000	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	14	0	0	11	10	47.62	-	-	-	A	7050587	G	A	7050587	3	1	569	1	0	0	0	0	1	0	0	0	1115	971	34	4	3439	4	ATN1	12	7050587	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	126544	7050587	126801308	789	50745										
C1R	0	genome.wustl.edu	37	chr12	7242820	7242820	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagttgcccacagaacctccCcaggcttttcttatcagcag	7	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	7242820	7242820	C	A	SNP	C1R	ENST00000290575	human	ensembl	69_37n	-1	known	missense	c.298	p.G100W	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_EGF-like_Ca-bd,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1R	HGNC	ENSG00000159403	103	0	0	58	51	46.79	-	-	-	A	7242820	C	A	7242820	3	1	569	1	0	0	0	0	1	0	0	0	1991	623	22	4	1576	4	C1R	12	7242820	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	192233	7242820	126609075	790	50746										
CD163L1	0	genome.wustl.edu	37	chr12	7531781	7531781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaaacaacttcagcaatgtTcattccccagccattagcac	5	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	7531781	7531781	T	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.2164	p.N722D	0.010	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	228	1	0.44	162	105	39.33	-	-	-	C	7531781	T	C	7531781	3	2	569	1	0	0	0	0	1	0	0	0	2997	1783	62	5	2241	5	CD163L1	12	7531781	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	288961	7531781	126320114	791	50747										
PZP	0	genome.wustl.edu	37	chr12	9321278	9321278	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgaagtatcggatgtatctAaaaaaaaatctctgatcagt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	9321278	9321278	A	-	DEL	PZP	ENST00000546116	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PZP	HGNC	ENSG00000126838	19	0	0	7	9	50	-	-	-	-	9321278	A	-	9321278	6	5	569	0	1	1	0	1	0	0	0	0	12952	377	13	0		0	PZP	12	9321278	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	1789497	9321278	124530617	792	50748										
PRB3	0	genome.wustl.edu	37	chr12	11420585	11420585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccttctggctttcccggacGaggtgggggaccttgggact	15	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	11420585	11420585	G	A	SNP	PRB3	ENST00000381842	human	ensembl	69_37n	-1	known	missense	c.598	p.R200C	0.000	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	287	0	0	233	78	25	-	-	-	A	11420585	G	A	11420585	3	1	569	1	0	0	0	0	1	0	0	0	12525	1058	37	1	339	1	PRB3	12	11420585	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2099307	11420585	122431310	793	50749										
ETV6	0	genome.wustl.edu	37	chr12	12022746	12022746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcctgaacccccggcactcCgtggatttcaaacagtccag	8	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	12022746	12022746	C	T	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	silent	c.852	p.S284	0.949	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	70	0	0	44	35	44.3	-	-	-	T	12022746	C	T	12022746	2	4	569	1	0	0	0	0	0	0	0	1	5320	639	23	1		1	ETV6	12	12022746	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	602161	12022746	121829149	794	50750										
ETV6	0	genome.wustl.edu	37	chr12	12037513	12037513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gactggctcgactgtggggaAaccataaggtaaaagggcag	15	7	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	12037513	12037513	A	G	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	missense	c.1144	p.N382D	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	176	0	0	115	73	38.83	-	-	-	G	12037513	A	G	12037513	3	3	569	1	0	0	0	0	1	0	0	0	5320	14	1	5	1166	5	ETV6	12	12037513	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	14767	12037513	121814382	795	50751										
ETV6	0	genome.wustl.edu	37	chr12	12038878	12038878	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaacagaacaaacatgaccTatgagaaaatgtccagagcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	12038878	12038878	T	-	DEL	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	frame_shift_del	c.1171	p.Y391fs	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	308	0	0	180	99	35.48	-	-	-	-	12038878	T	-	12038878	7	5	569	1	0	1	0	1	0	0	0	0	5320	1522	53	0	1197	0	ETV6	12	12038878	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	1365	12038878	121813017	796	50752	423	2								
ETV6	0	genome.wustl.edu	37	chr12	12038880	12038880	+	Nonsense_Mutation	SNP	T	T	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacagaacaaacatgacctaTgagaaaatgtccagagccct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	12038880	12038880	T	A	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	nonsense	c.1173	p.Y391*	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	304	0	0	182	100	35.34	-	-	-	A	12038880	T	A	12038880	4	1	569	1	0	0	0	0	0	1	0	0	5320	1471	51	5	1199	5	ETV6	12	12038880	Nonsense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2	12038880	121813015	797	50753	423	2								
BHLHE41	0	genome.wustl.edu	37	chr12	26275895	26275895	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccggtgcctttgctcagagGgacctgttgagtcaacagct	13	11	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	26275895	26275895	G	T	SNP	BHLHE41	ENST00000242728	human	ensembl	69_37n	-1	known	missense	c.553	p.P185T	0.685	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	BHLHE41	HGNC	ENSG00000123095	41	0	0	32	19	37.25	-	-	-	T	26275895	G	T	26275895	3	4	569	1	0	0	0	0	1	0	0	0	1429	1232	43	4	899	4	BHLHE41	12	26275895	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	14237015	26275895	107576000	798	50754										
ITPR2	0	genome.wustl.edu	37	chr12	26753017	26753017	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaatgtatgggctagattcAttacttcattcatcttttca	6	7	5	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	26753017	26753017	A	G	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.3704	p.M1235T	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	288	0	0	181	132	42.17	-	-	-	G	26753017	A	G	26753017	3	3	569	1	0	0	0	0	1	0	0	0	7975	217	8	5	4517	5	ITPR2	12	26753017	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	477122	26753017	107098878	799	50755										
FGD4	0	genome.wustl.edu	37	chr12	32761022	32761022	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gattccctggactggaatgaTgctaaaagtaaatgcttttt	9	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	32761022	32761022	T	C	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	silent	c.1125	p.D375	0.994	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	222	0	0	125	111	47.03	-	-	-	C	32761022	T	C	32761022	2	2	569	1	0	0	0	0	0	0	0	1	5881	1461	51	5		5	FGD4	12	32761022	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6008005	32761022	101090873	800	50756										
YARS2	0	genome.wustl.edu	37	chr12	32880435	32880435	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactgcaagcagatggcgctAaaaaaagagaccctatctct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	32880435	32880435	A	-	DEL	YARS2	ENST00000551673	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.909	-	-	-	no_errors	YARS2	HGNC	ENSG00000139131	36	0	0	29	13	30.95	-	-	-	-	32880435	A	-	32880435	6	5	569	0	1	1	0	1	0	0	0	0	17565	377	13	0		0	YARS2	12	32880435	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	119413	32880435	100971460	801	50757										
CNTN1	0	genome.wustl.edu	37	chr12	41419005	41419005	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcaaacagagttcaagtCaccagccaagagtactcggc	10	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	41419005	41419005	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	silent	c.2577	p.V859	0.102	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	88	0	0	64	43	40.19	-	-	-	T	41419005	C	T	41419005	2	4	569	1	0	0	0	0	0	0	0	1	3670	813	29	2		2	CNTN1	12	41419005	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8538570	41419005	92432890	802	50758										
ADAMTS20	0	genome.wustl.edu	37	chr12	43822533	43822533	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcacaatatgattcatctgCtattctatcaagagcatcac	6	10	5	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	43822533	43822533	C	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3559	p.A1187S	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	167	0	0	138	69	33.33	-	-	-	A	43822533	C	A	43822533	3	1	569	1	0	0	0	0	1	0	0	0	266	797	28	4	2232	4	ADAMTS20	12	43822533	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2403528	43822533	90029362	803	50759										
SLC38A1	0	genome.wustl.edu	37	chr12	46599925	46599925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taactatcaccaccagaacgCggccatccacgtaccaggct	7	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	46599925	46599925	C	T	SNP	SLC38A1	ENST00000398637	human	ensembl	69_37n	-1	known	missense	c.584	p.R195H	0.976	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371	192	0	0	125	62	33.16	-	-	-	T	46599925	C	T	46599925	3	4	569	1	0	0	0	0	1	0	0	0	14690	768	27	1	915	1	SLC38A1	12	46599925	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2777392	46599925	87251970	804	50760										
SLC38A4	0	genome.wustl.edu	37	chr12	47178890	47178890	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcaagtggtagcatacctcCttccttggctgtttttaata	7	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	47178890	47178890	C	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	nonsense	c.397	p.G133*	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	479	0	0	295	172	36.75	-	-	-	A	47178890	C	A	47178890	4	1	569	1	0	0	0	0	0	1	0	0	14695	690	24	4	1294	4	SLC38A4	12	47178890	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	578965	47178890	86673005	805	50761										
PFKM	0	genome.wustl.edu	37	chr12	48531564	48531564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggggaccccagataccccaGcctgtgtagtgagcctctct	11	14	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	48531564	48531564	G	A	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.997	p.A333T	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	236	0	0	164	93	35.77	-	-	-	A	48531564	G	A	48531564	3	1	569	1	0	0	0	0	1	0	0	0	11839	971	34	4	1256	4	PFKM	12	48531564	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1352674	48531564	85320331	806	50762										
MLL2	0	genome.wustl.edu	37	chr12	49435219	49435219	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggggcgggctgcccagtgCccctggctgcgggggaatgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	49435219	49435219	C	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	frame_shift_del	c.6334	p.A2112fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	20	0	0	12	10	43.48	-	-	-	-	49435219	C	-	49435219	7	5	569	1	0	1	0	1	0	0	0	0	9692	739	26	0	10375	0	MLL2	12	49435219	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	903655	49435219	84416676	807	50763										
MLL2	0	genome.wustl.edu	37	chr12	49446809	49446809	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaaccactccgagttgggaTtcagttctgctgagcccgcc	10	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	49446809	49446809	T	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.1001	p.N334I	0.928	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	75	0	0	51	30	37.04	-	-	-	A	49446809	T	A	49446809	3	1	569	1	0	0	0	0	1	0	0	0	9692	1493	52	5	15800	5	MLL2	12	49446809	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	11590	49446809	84405086	808	50764										
KCNH3	0	genome.wustl.edu	37	chr12	49937857	49937857	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccttcaaggtcaacgtggTcagtgtggctgggctggctg	16	9	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	49937857	49937857	T	C	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	splice_site	c.981+2	e6+2	1.000	-	-	-	no_errors	KCNH3	HGNC	ENSG00000135519	143	0	0	89	49	35	-	-	-	C	49937857	T	C	49937857	5	2	569	1	0	0	0	0	0	0	1	0	8087	1681	58	5	1005	5	KCNH3	12	49937857	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	491048	49937857	83914038	809	50765										
CSRNP2	0	genome.wustl.edu	37	chr12	51467703	51467703	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggcaaactcacagagtgtaTagctccgtacagagttatgg	12	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	51467703	51467703	T	C	SNP	CSRNP2	ENST00000228515	human	ensembl	69_37n	-1	known	missense	c.314	p.Y105C	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925	121	0	0	68	63	48.09	-	-	-	C	51467703	T	C	51467703	3	2	569	1	0	0	0	0	1	0	0	0	3996	1406	49	5	1329	5	CSRNP2	12	51467703	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1529846	51467703	82384192	810	50766										
SLC4A8	0	genome.wustl.edu	37	chr12	51857480	51857480	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgggggtcacagtgggccagAacttcagcgcactgggcggt	17	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	51857480	51857480	A	T	SNP	SLC4A8	ENST00000453097	human	ensembl	69_37n	1	known	missense	c.1331	p.E444V	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	242	0	0	161	113	41.09	-	-	-	T	51857480	A	T	51857480	3	4	569	1	0	0	0	0	1	0	0	0	14748	246	9	5	1373	5	SLC4A8	12	51857480	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	389777	51857480	81994415	811	50767										
KRT75	0	genome.wustl.edu	37	chr12	52822086	52822086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggtaggtggcgatctccaCgtccagggccagcttgatgt	15	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	52822086	52822086	C	T	SNP	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	missense	c.1336	p.V446M	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	123	0	0	79	60	43.17	-	-	-	T	52822086	C	T	52822086	3	4	569	1	0	0	0	0	1	0	0	0	8541	536	19	1	331	1	KRT75	12	52822086	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	964606	52822086	81029809	812	50768										
KRT1	0	genome.wustl.edu	37	chr12	53073854	53073854	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaaagccaccaccaccataAccaccaccaaagccactacc	2	21	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	53073854	53073854	A	G	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	silent	c.279	p.G93	0.070	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	997	1	0.1	498	315	38.23	-	-	-	G	53073854	A	G	53073854	2	3	569	1	0	0	0	0	0	0	0	1	8500	30	2	5		5	KRT1	12	53073854	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	251768	53073854	80778041	813	50769										
SPRYD3	0	genome.wustl.edu	37	chr12	53460125	53460125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcctgccctcatgctccggCtctatctcttccccatcctc	4	20	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	53460125	53460125	C	T	SNP	SPRYD3	ENST00000547257	human	ensembl	69_37n	-1	known	missense	c.19	p.A7T	0.992	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPRYD3	HGNC	ENSG00000167778	1049	3	0.29	595	369	38.28	-	-	-	T	53460125	C	T	53460125	3	4	569	1	0	0	0	0	1	0	0	0	15200	796	28	4	169	4	SPRYD3	12	53460125	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	386271	53460125	80391770	814	50770										
MAP3K12	0	genome.wustl.edu	37	chr12	53879891	53879891	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgcaggtgcaggtagttcAtgccaccagcgatgcccatg	13	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	53879891	53879891	A	G	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	missense	c.671	p.M224T	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	166	1	0.6	129	79	37.98	-	-	-	G	53879891	A	G	53879891	3	3	569	1	0	0	0	0	1	0	0	0	9317	217	8	5	1952	5	MAP3K12	12	53879891	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	419766	53879891	79972004	815	50771										
NCKAP1L	0	genome.wustl.edu	37	chr12	54910761	54910761	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgttggctgatgaaccgggActactgggtcctaaggcaag	15	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	54910761	54910761	A	G	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	silent	c.1080	p.G360	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	409	1	0.24	271	193	41.33	-	-	-	G	54910761	A	G	54910761	2	3	569	1	0	0	0	0	0	0	0	1	10294	262	10	5		5	NCKAP1L	12	54910761	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1030870	54910761	78941134	816	50772										
OR6C76	0	genome.wustl.edu	37	chr12	55820818	55820818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatgtatgtgaaaacatcaGcaaaggaaggagttgctttg	11	5	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	55820818	55820818	G	A	SNP	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	missense	c.781	p.A261T	0.989	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	242	0	0	165	80	32.52	-	-	-	A	55820818	G	A	55820818	3	1	569	1	0	0	0	0	1	0	0	0	11273	971	34	4	783	4	OR6C76	12	55820818	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	910057	55820818	78031077	817	50773										
RDH5	0	genome.wustl.edu	37	chr12	56115678	56115679	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcgcctggcagccaatggtINSgggggctactgtgtctccaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	56115678	56115679	-	G	INS	RDH5	ENST00000257895	human	ensembl	69_37n	1	known	frame_shift_ins	c.516_517	p.Y174fs	0.639:1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437	60	0	0	51	18	26.09	-	-	-	G	56115679	-	G	56115678	7	5	569	1	0	1	1	0	0	0	0	0	13278	1683	59	0	522	0	RDH5	12	56115678	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	294860	56115678	77736217	818	50774										
ERBB3	0	genome.wustl.edu	37	chr12	56488228	56488228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgcccattttcgagatgggCcccactgtgtgagcagctgc	13	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	56488228	56488228	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1747	p.P583S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	109	0	0	76	58	42.96	-	-	-	T	56488228	C	T	56488228	3	4	569	1	0	0	0	0	1	0	0	0	5245	739	26	4	1936	4	ERBB3	12	56488228	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	372550	56488228	77363667	819	50775										
MYO1A	0	genome.wustl.edu	37	chr12	57432356	57432356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgctgggccttccacatggCctgcaacaggtctcggaaga	13	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	57432356	57432356	C	T	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	missense	c.1600	p.A534T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	93	0	0	65	46	41.44	-	-	-	T	57432356	C	T	57432356	3	4	569	1	0	0	0	0	1	0	0	0	10140	739	26	4	1579	4	MYO1A	12	57432356	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	944128	57432356	76419539	820	50776										
LRP1	0	genome.wustl.edu	37	chr12	57559871	57559871	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcattccctccccagatcaGcacacctgcccctcggaccg	6	21	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	57559871	57559871	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.2676	p.Q892	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	119	0	0	71	39	35.45	-	-	-	A	57559871	G	A	57559871	2	1	569	1	0	0	0	0	0	0	0	1	9017	962	34	4		4	LRP1	12	57559871	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	127515	57559871	76292024	821	50777										
DTX3	0	genome.wustl.edu	37	chr12	58000854	58000854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccacagggtcctcccccgGcccctccaaatgggctctac	8	21	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	58000854	58000854	G	A	SNP	DTX3	ENST00000551632	human	ensembl	69_37n	1	known	missense	c.217	p.A73T	0.842	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498	53	0	0	33	20	37.74	-	-	-	A	58000854	G	A	58000854	3	1	569	1	0	0	0	0	1	0	0	0	4830	1203	42	4	214	4	DTX3	12	58000854	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	440983	58000854	75851041	822	50778										
HELB	0	genome.wustl.edu	37	chr12	66725187	66725187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acggaagagctctggagacaGtggaggacccagcacaccgt	14	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	66725187	66725187	G	A	SNP	HELB	ENST00000247815	human	ensembl	69_37n	1	known	missense	c.2924	p.S975N	0.000	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	93	0	0	71	38	34.86	-	-	-	A	66725187	G	A	66725187	3	1	569	1	0	0	0	0	1	0	0	0	7096	1029	36	4	2970	4	HELB	12	66725187	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8724333	66725187	67126708	823	50779										
TPH2	0	genome.wustl.edu	37	chr12	72366385	72366385	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagctctccaaactctatcCcactcatgcttgccgagagt	8	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	72366385	72366385	C	A	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	missense	c.695	p.P232H	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	191	1	0.52	134	83	38.07	-	-	-	A	72366385	C	A	72366385	3	1	569	1	0	0	0	0	1	0	0	0	16498	623	22	4	717	4	TPH2	12	72366385	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5641198	72366385	61485510	824	50780										
GLIPR1L2	0	genome.wustl.edu	37	chr12	75816802	75816802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaataaacatgaaaaaaatgCataatggattggacaagaaa	7	3	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	75816802	75816802	C	T	SNP	GLIPR1L2	ENST00000320460	human	ensembl	69_37n	1	known	missense	c.703	p.H235Y	0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR1L2	HGNC	ENSG00000180481	376	0	0	201	105	34.31	-	-	-	T	75816802	C	T	75816802	3	4	569	1	0	0	0	0	1	0	0	0	6495	710	25	4	717	4	GLIPR1L2	12	75816802	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3450417	75816802	58035093	825	50781										
ATP2B1	0	genome.wustl.edu	37	chr12	89996933	89996933	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atttatttcgttgaaaagttGcatcagcacaaaggtattaa	7	5	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	89996933	89996933	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	nonsense	c.2947	p.Q983*	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	238	0	0	214	114	34.76	-	-	-	A	89996933	G	A	89996933	4	1	569	1	0	0	0	0	0	1	0	0	1143	1328	46	4	889	4	ATP2B1	12	89996933	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	14180131	89996933	43854962	826	50782										
TMCC3	0	genome.wustl.edu	37	chr12	94965228	94965228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttcatcttggtattatcaTcctttctatggcacacagga	7	10	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	94965228	94965228	T	C	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.1417	p.M473V	1.000	NULL	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	159	0	0	109	72	39.78	-	-	-	C	94965228	T	C	94965228	3	2	569	1	0	0	0	0	1	0	0	0	16089	1435	50	5	20	5	TMCC3	12	94965228	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4968295	94965228	38886667	827	50783										
ACTR6	0	genome.wustl.edu	37	chr12	100613799	100613799	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttaaagaaatgcagccgcaTttttttaagaacattgtctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	100613799	100613799	T	-	DEL	ACTR6	ENST00000188312	human	ensembl	69_37n	1	known	frame_shift_del	c.936	p.F314fs	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR6	HGNC	ENSG00000075089	186	0	0	135	73	34.27	-	-	-	-	100613799	T	-	100613799	7	5	569	1	0	1	0	1	0	0	0	0	216	1490	52	0	974	0	ACTR6	12	100613799	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	5648571	100613799	33238096	828	50784										
TDG	0	genome.wustl.edu	37	chr12	104379425	104379425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaagaaaaatatgatccaGgttatgaggcagcatatggt	12	4	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	104379425	104379425	G	A	SNP	TDG	ENST00000392872	human	ensembl	69_37n	1	known	missense	c.1009	p.G337S	1.000	NULL	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Thymine-DNA_glycosylase	-	no_errors	TDG	HGNC	ENSG00000139372	588	0	0	423	184	30.31	-	-	-	A	104379425	G	A	104379425	3	1	569	1	0	0	0	0	1	0	0	0	15820	1000	35	4	1043	4	TDG	12	104379425	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3765626	104379425	29472470	829	50785										
KIAA1033	0	genome.wustl.edu	37	chr12	105546180	105546180	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaaacttggagtaacaccTgagggacagagctaccttga	11	8	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	105546180	105546180	T	C	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	silent	c.2709	p.P903	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	167	0	0	105	58	35.37	-	-	-	C	105546180	T	C	105546180	2	2	569	1	0	0	0	0	0	0	0	1	8258	1567	55	5		5	KIAA1033	12	105546180	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1166755	105546180	28305715	830	50786										
KIAA1033	0	genome.wustl.edu	37	chr12	105553823	105553823	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacacacgaaattctgccgAaggcacagaatatttcaaaa	6	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	105553823	105553823	A	G	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.2957	p.E986G	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	102	0	0	63	24	27.27	-	-	-	G	105553823	A	G	105553823	3	3	569	1	0	0	0	0	1	0	0	0	8258	246	9	5	3071	5	KIAA1033	12	105553823	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7643	105553823	28298072	831	50787										
TCP11L2	0	genome.wustl.edu	37	chr12	106715444	106715444	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgtgcgagataatgatatcAgagagttaaaggctactggc	12	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	106715444	106715444	A	G	SNP	TCP11L2	ENST00000299045	human	ensembl	69_37n	1	known	missense	c.595	p.R199G	0.992	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	327	0	0	233	149	38.9	-	-	-	G	106715444	A	G	106715444	3	3	569	1	0	0	0	0	1	0	0	0	15810	180	7	5	609	5	TCP11L2	12	106715444	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1161621	106715444	27136451	832	50788										
FICD	0	genome.wustl.edu	37	chr12	108913234	108913234	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactctgggttcaaggagacGcttcctgtgaagccctaacc	10	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	108913234	108913234	G	A	SNP	FICD	ENST00000552695	human	ensembl	69_37n	1	known	silent	c.1359	p.T453	0.078	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855	59	0	0	42	30	41.1	-	-	-	A	108913234	G	A	108913234	2	1	569	1	0	0	0	0	0	0	0	1	5933	1074	38	1		1	FICD	12	108913234	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2197790	108913234	24938661	833	50789										
SSH1	0	genome.wustl.edu	37	chr12	109182841	109182841	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacctgctggccaagtgggcCacaggggaggacgtgatgtg	18	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	109182841	109182841	C	A	SNP	SSH1	ENST00000326495	human	ensembl	69_37n	-1	known	silent	c.2073	p.V691	0.024	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	78	0	0	60	41	40.59	-	-	-	A	109182841	C	A	109182841	2	1	569	1	0	0	0	0	0	0	0	1	15275	581	21	4		4	SSH1	12	109182841	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	269607	109182841	24669054	834	50790										
MYO1H	0	genome.wustl.edu	37	chr12	109882288	109882288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgaagcagttactaaactcGtcatgctggttaagaaggag	11	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	109882288	109882288	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.2929	p.V977I	0.942	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	492	1	0.2	325	194	37.31	-	-	-	A	109882288	G	A	109882288	3	1	569	1	0	0	0	0	1	0	0	0	10147	1145	40	1	3013	1	MYO1H	12	109882288	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	699447	109882288	23969607	835	50791										
ATXN2	0	genome.wustl.edu	37	chr12	111895157	111895157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actgctgagcaagggagcccGtggaaactaaagtgaaagaa	13	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	111895157	111895157	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.3377	p.T1126M	0.995	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	605	1	0.16	428	244	36.2	-	-	-	A	111895157	G	A	111895157	3	1	569	1	0	0	0	0	1	0	0	0	1215	1145	40	1	580	1	ATXN2	12	111895157	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2012869	111895157	21956738	836	50792										
NAA25	0	genome.wustl.edu	37	chr12	112485490	112485490	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtcttttggatcccagctgAaaaaaacatttaagtctctg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	112485490	112485490	A	-	DEL	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	frame_shift_del	c.1985	p.F662fs	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	441	0	0	233	153	39.23	-	-	-	-	112485490	A	-	112485490	7	5	569	1	0	1	0	1	0	0	0	0	10193	246	9	0	965	0	NAA25	12	112485490	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	590333	112485490	21366405	837	50793										
DTX1	0	genome.wustl.edu	37	chr12	113533262	113533262	+	RNA	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgggagataggcacaggcaGgggctccagcaaccactggc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	113533262	113533262	G	-	DEL	DTX1	ENST00000547730	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DTX1	HGNC	ENSG00000135144	53	0	0	35	15	30	-	-	-	-	113533262	G	-	113533262	6	5	569	0	1	1	0	1	0	0	0	0	4828	1015	35	0		0	DTX1	12	113533262	RNA	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	1047772	113533262	20318633	838	50794										
GCN1L1	0	genome.wustl.edu	37	chr12	120622011	120622011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggcctcagccaactgctggAtggctgcctgcaaggccctg	14	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	120622011	120622011	A	G	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.221	p.I74T	1.000	NULL	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	97	0	0	78	37	31.9	-	-	-	G	120622011	A	G	120622011	3	3	569	1	0	0	0	0	1	0	0	0	6349	333	12	5	8014	5	GCN1L1	12	120622011	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7088749	120622011	13229884	839	50795										
VPS33A	0	genome.wustl.edu	37	chr12	122720397	122720397	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagttgggtaattgtttctgCcccccgtctgcggtttcagc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	122720397	122720397	C	-	DEL	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	frame_shift_del	c.1376	p.G459fs	0.996	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	445	0	0	287	148	33.41	-	-	-	-	122720397	C	-	122720397	7	5	569	1	0	1	0	1	0	0	0	0	17298	739	26	0	426	0	VPS33A	12	122720397	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	2098386	122720397	11131498	840	50796										
DNAH10	0	genome.wustl.edu	37	chr12	124317700	124317700	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acacgtgggaaaatatgaaaTtcactgtagtcaagtattgc	9	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	124317700	124317700	T	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.4231	p.F1411I	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	195	0	0	110	107	49.31	-	-	-	A	124317700	T	A	124317700	3	1	569	1	0	0	0	0	1	0	0	0	4634	1493	52	5	4333	5	DNAH10	12	124317700	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1597303	124317700	9534195	841	50797										
DNAH10	0	genome.wustl.edu	37	chr12	124419900	124419900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaatactttccggacccccGtctacaccacctccatgaga	6	16	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	124419900	124419900	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.13288	p.V4430I	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	313	1	0.32	232	123	34.65	-	-	-	A	124419900	G	A	124419900	3	1	569	1	0	0	0	0	1	0	0	0	4634	1145	40	1	13598	1	DNAH10	12	124419900	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	102200	124419900	9431995	842	50798										
UBC	0	genome.wustl.edu	37	chr12	125398030	125398030	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgacgttctcgatggtgtcActgggctcgacctcaagggt	13	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	125398030	125398030	A	G	SNP	UBC	ENST00000536834	human	ensembl	69_37n	-1	known	missense	c.197	p.V66A	0.993	smart_Ubiquitin,prints_Ubiquitin_subgr	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	712	2	0.28	406	261	39.01	-	-	-	G	125398030	A	G	125398030	3	3	569	1	0	0	0	0	1	0	0	0	16939	156	6	5	1773	5	UBC	12	125398030	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	978130	125398030	8453865	843	50799										
MMP17	0	genome.wustl.edu	37	chr12	132325242	132325242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgaggtggcgggcagcgccGccgacatccagatcgacttc	14	14	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	132325242	132325242	G	A	SNP	MMP17	ENST00000360564	human	ensembl	69_37n	1	known	missense	c.547	p.A183T	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP17	HGNC	ENSG00000198598	21	0	0	9	9	50	-	-	-	A	132325242	G	A	132325242	3	1	569	1	0	0	0	0	1	0	0	0	9727	1087	38	1	561	1	MMP17	12	132325242	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6927212	132325242	1526653	844	50800										
GOLGA3	0	genome.wustl.edu	37	chr12	133393373	133393373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatccgggctttccccttcCgtggatgctctgtttacctc	8	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	12	133393373	133393373	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	silent	c.159	p.T53	0.007	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	144	0	0	105	41	28.08	-	-	-	T	133393373	C	T	133393373	2	4	569	1	0	0	0	0	0	0	0	1	6606	639	23	1		1	GOLGA3	12	133393373	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1068131	133393373	458522	845	50801										
PSPC1	0	genome.wustl.edu	37	chr13	20279944	20279944	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcattggaggaggaccttggTtaccagcaggggctgggcta	16	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	20279944	20279944	T	C	SNP	PSPC1	ENST00000338910	human	ensembl	69_37n	-1	known	missense	c.1244	p.N415S	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390	563	1	0.18	487	116	19.24	-	-	-	C	20279944	T	C	20279944	3	2	569	1	0	0	0	0	1	0	0	0	12796	1725	60	5	335	5	PSPC1	13	20279944	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09		20279944	94889934	846	50802										
XPO4	0	genome.wustl.edu	37	chr13	21417072	21417072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccagctcaagacttgattgGcgagtgcaaggtaacgctga	12	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	21417072	21417072	G	A	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.689	p.A230V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	112	0	0	87	63	41.45	-	-	-	A	21417072	G	A	21417072	3	1	569	1	0	0	0	0	1	0	0	0	17543	1203	42	4	2838	4	XPO4	13	21417072	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1137128	21417072	93752806	847	50803										
XPO4	0	genome.wustl.edu	37	chr13	21442809	21442809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atatgtgctctgcatgctggCgttgttcattattgaccatg	10	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	21442809	21442809	C	T	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.101	p.R34H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	417	0	0	288	179	38.33	-	-	-	T	21442809	C	T	21442809	3	4	569	1	0	0	0	0	1	0	0	0	17543	768	27	1	3442	1	XPO4	13	21442809	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	25737	21442809	93727069	848	50804										
SACS	0	genome.wustl.edu	37	chr13	23911836	23911836	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgaatatttggaaaaaacActtcagaaaaaaactgtttc	5	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	23911836	23911836	A	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.6179	p.V2060A	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	37	0	0	26	13	32.5	-	-	-	G	23911836	A	G	23911836	3	3	569	1	0	0	0	0	1	0	0	0	13890	159	6	5	7564	5	SACS	13	23911836	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2469027	23911836	91258042	849	50805										
SACS	0	genome.wustl.edu	37	chr13	23912644	23912644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttagccatttcaaagagagCagctgggtcatcatctggac	10	10	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	23912644	23912644	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.5371	p.A1791T	0.095	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	257	0	0	186	99	34.74	-	-	-	T	23912644	C	T	23912644	3	4	569	1	0	0	0	0	1	0	0	0	13890	710	25	4	8372	4	SACS	13	23912644	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	808	23912644	91257234	850	50806										
PABPC3	0	genome.wustl.edu	37	chr13	25670802	25670802	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagcagctgaaagagctattAaaaaaatgaacggaatgctc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	25670802	25670802	A	-	DEL	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	frame_shift_del	c.466	p.M158fs	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	406	0	0	314	169	34.63	-	-	-	-	25670802	A	-	25670802	7	5	569	1	0	1	0	1	0	0	0	0	11438	363	13	0	468	0	PABPC3	13	25670802	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	1758158	25670802	89499076	851	50807										
PDX1	0	genome.wustl.edu	37	chr13	28498618	28498618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaggacaagaagcgcggcgGcgggacagctgtcgggggtg	22	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	28498618	28498618	G	A	SNP	PDX1	ENST00000381033	human	ensembl	69_37n	1	known	missense	c.632	p.G211D	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	PDX1	HGNC	ENSG00000139515	63	0	0	41	24	36.92	-	-	-	A	28498618	G	A	28498618	3	1	569	1	0	0	0	0	1	0	0	0	11768	1203	42	4	638	4	PDX1	13	28498618	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2827816	28498618	86671260	852	50808										
FRY	0	genome.wustl.edu	37	chr13	32836505	32836505	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatggagctgctcaccacaGcctgtgactcgacccctgca	9	17	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	32836505	32836505	G	C	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.7672	p.A2558P	0.370	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	241	0	0	191	141	42.34	-	-	-	C	32836505	G	C	32836505	3	2	569	1	0	0	0	0	1	0	0	0	6112	971	34	4	7882	4	FRY	13	32836505	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4337887	32836505	82333373	853	50809										
SOHLH2	0	genome.wustl.edu	37	chr13	36776201	36776201	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccaggtagcccacagtgacAtctccaactaataagatgtc	8	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	36776201	36776201	A	G	SNP	SOHLH2	ENST00000554962	human	ensembl	69_37n	-1	known	silent	c.309	p.D103	0.999	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH2	HGNC	ENSG00000120669	143	1	0.69	93	57	38	-	-	-	G	36776201	A	G	36776201	2	3	569	1	0	0	0	0	0	0	0	1	15013	214	8	5		5	SOHLH2	13	36776201	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3939696	36776201	78393677	854	50810										
EXOSC8	0	genome.wustl.edu	37	chr13	37577085	37577085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcaggttcaattagtaccGcagatggttctgctttagtg	10	7	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	37577085	37577085	G	A	SNP	EXOSC8	ENST00000389704	human	ensembl	69_37n	1	known	missense	c.133	p.A45T	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699	415	0	0	311	165	34.66	-	-	-	A	37577085	G	A	37577085	3	1	569	1	0	0	0	0	1	0	0	0	5357	1087	38	1	147	1	EXOSC8	13	37577085	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	800884	37577085	77592793	855	50811										
NAA16	0	genome.wustl.edu	37	chr13	41885599	41885599	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggttcgtcccggtgcccaccCccgcgaagcggagcgcccgg	15	18	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	41885599	41885599	C	T	SNP	NAA16	ENST00000476980	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NAA16	HGNC	ENSG00000172766	10	0	0	12	5	29.41	-	-	-	T	41885599	C	T	41885599	1	4	569	0	1	0	0	0	0	0	0	0	10191	638	22	4		4	NAA16	13	41885599	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4308514	41885599	73284279	856	50812										
EPSTI1	0	genome.wustl.edu	37	chr13	43537413	43537414	+	Frame_Shift_Ins	INS	-	-	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctctctgaattgccttcaINSttttttggagttcagcttct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	43537413	43537414	-	T	INS	EPSTI1	ENST00000313640	human	ensembl	69_37n	-1	known	frame_shift_ins	c.467_466	p.M156fs	1.000:1.000	NULL	NULL	-	no_errors	EPSTI1	HGNC	ENSG00000133106	771	0	0	538	243	31.11	-	-	-	T	43537414	-	T	43537413	7	5	569	1	0	1	1	0	0	0	0	0	5235	217	8	0	801	0	EPSTI1	13	43537413	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	1651814	43537413	71632465	857	50813										
INTS6	0	genome.wustl.edu	37	chr13	52026593	52026593	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctttggccgtgtccaggtaGgtggtgcccagatggctgcg	16	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	52026593	52026593	G	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	silent	c.69	p.T23	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	113	0	0	67	42	38.53	-	-	-	T	52026593	G	T	52026593	2	4	569	1	0	0	0	0	0	0	0	1	7836	987	35	4		4	INTS6	13	52026593	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8489180	52026593	63143285	858	50814										
LECT1	0	genome.wustl.edu	37	chr13	53298181	53298181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggcgcccacctcaggaataCgagccttcacttgcgcttta	9	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	53298181	53298181	C	T	SNP	LECT1	ENST00000377962	human	ensembl	69_37n	-1	known	missense	c.419	p.R140H	0.393	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110	284	0	0	191	105	35.47	-	-	-	T	53298181	C	T	53298181	3	4	569	1	0	0	0	0	1	0	0	0	8766	536	19	1	601	1	LECT1	13	53298181	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1271588	53298181	61871697	859	50815										
TBC1D4	0	genome.wustl.edu	37	chr13	75923344	75923344	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttatgcaaagagtgcatcGggcaggcctcacacagttta	11	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	75923344	75923344	G	C	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.1370	p.P457R	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	61	0	0	72	32	30.77	-	-	-	C	75923344	G	C	75923344	3	2	569	1	0	0	0	0	1	0	0	0	15717	1116	39	3	2594	3	TBC1D4	13	75923344	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	22625163	75923344	39246534	860	50816										
SLITRK1	0	genome.wustl.edu	37	chr13	84453605	84453605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactctgtgggccccatctgCgttgtaaggcccattgtgcc	11	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	84453605	84453605	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.2038	p.A680T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	137	1	0.72	87	26	23.01	-	-	-	T	84453605	C	T	84453605	3	4	569	1	0	0	0	0	1	0	0	0	14831	768	27	1	56	1	SLITRK1	13	84453605	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8530261	84453605	30716273	861	50817										
ERCC5	0	genome.wustl.edu	37	chr13	103515094	103515094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atctccaacttgtacaaattCtgtgtcaaagaatgaaacac	5	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	103515094	103515094	C	T	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	1	known	missense	c.1595	p.S532F	0.000	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	175	1	0.57	137	106	43.44	-	-	-	T	103515094	C	T	103515094	3	4	569	1	0	0	0	0	1	0	0	0	5253	913	32	2	1625	2	ERCC5	13	103515094	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	19061489	103515094	11654784	862	50818										
MYO16	0	genome.wustl.edu	37	chr13	109459037	109459037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcgctgcagttacacatggCgtgtgcgagtggctacaagg	14	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	109459037	109459037	C	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.686	p.A229V	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	255	0	0	178	87	32.83	-	-	-	T	109459037	C	T	109459037	3	4	569	1	0	0	0	0	1	0	0	0	10136	768	27	1	708	1	MYO16	13	109459037	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5943943	109459037	5710841	863	50819										
MYO16	0	genome.wustl.edu	37	chr13	109707900	109707900	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agatggtgaagatcttccgaTatggataccctgttcgcctt	10	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	109707900	109707900	T	C	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.3226	p.Y1076H	0.027	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	276	0	0	175	118	40.14	-	-	-	C	109707900	T	C	109707900	3	2	569	1	0	0	0	0	1	0	0	0	10136	1406	49	5	3328	5	MYO16	13	109707900	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	248863	109707900	5461978	864	50820										
MYO16	0	genome.wustl.edu	37	chr13	109779750	109779750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtctccttcgctgcactcGgtgttcagcatggatgacag	12	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	109779750	109779750	G	A	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	silent	c.3837	p.S1279	0.058	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	110	0	0	56	27	32.53	-	-	-	A	109779750	G	A	109779750	2	1	569	1	0	0	0	0	0	0	0	1	10136	1103	39	1		1	MYO16	13	109779750	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	71850	109779750	5390128	865	50821										
COL4A2	0	genome.wustl.edu	37	chr13	111138064	111138064	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgggctgcctgggaggcccGgccacatcaaaggagtcaag	15	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	111138064	111138064	G	T	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.3088	p.G1030C	0.513	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	49	0	0	41	26	38.81	-	-	-	T	111138064	G	T	111138064	3	4	569	1	0	0	0	0	1	0	0	0	3720	1116	39	3	3218	3	COL4A2	13	111138064	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1358314	111138064	4031814	866	50822										
F10	0	genome.wustl.edu	37	chr13	113777177	113777177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actcggccacaccatggggcGcccactgcacctcgtcctgc	10	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	113777177	113777177	G	A	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	missense	c.8	p.R3H	0.000	pirsf_Pept_S1A_FX	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	43	0	0	21	17	44.74	-	-	-	A	113777177	G	A	113777177	3	1	569	1	0	0	0	0	1	0	0	0	5373	1087	38	1	10	1	F10	13	113777177	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2639113	113777177	1392701	867	50823										
F10	0	genome.wustl.edu	37	chr13	113801805	113801805	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agccaagagattcaaggtgaGggtaggtaagtgaccaacag	14	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	113801805	113801805	G	T	SNP	F10	ENST00000375559	human	ensembl	69_37n	1	known	missense	c.860	p.R287M	0.998	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F10	HGNC	ENSG00000126218	124	0	0	83	48	36.64	-	-	-	T	113801805	G	T	113801805	3	4	569	1	0	0	0	0	1	0	0	0	5373	1000	35	4	886	4	F10	13	113801805	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	24628	113801805	1368073	868	50824										
GRK1	0	genome.wustl.edu	37	chr13	114322116	114322116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgaagtttaaggaggggcctGtggagatccaggacgggctc	17	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	13	114322116	114322116	G	A	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	missense	c.415	p.V139M	0.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	117	0	0	67	42	38.53	-	-	-	A	114322116	G	A	114322116	3	1	569	1	0	0	0	0	1	0	0	0	6841	1377	48	4	417	4	GRK1	13	114322116	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	520311	114322116	847762	869	50825										
CCNB1IP1	0	genome.wustl.edu	37	chr14	20781842	20781842	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggaggtaacctcccctttcAtagaggtcaattctacatcc	7	12	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	20781842	20781842	A	G	SNP	CCNB1IP1	ENST00000353689	human	ensembl	69_37n	-1	known	missense	c.416	p.M139T	1.000	NULL	NULL	-	no_errors	CCNB1IP1	HGNC	ENSG00000100814	276	0	0	189	115	37.83	-	-	-	G	20781842	A	G	20781842	3	3	569	1	0	0	0	0	1	0	0	0	2941	217	8	5	425	5	CCNB1IP1	14	20781842	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09		20781842	86567698	870	50826										
CHD8	0	genome.wustl.edu	37	chr14	21870134	21870134	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccttagcaaaggtggaaccTtttccttcagattcaatggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	21870134	21870134	T	-	DEL	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	frame_shift_del	c.4044	p.G1349fs	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	268	0	0	199	95	31.46	-	-	-	-	21870134	T	-	21870134	7	5	569	1	0	1	0	1	0	0	0	0	3360	1606	56	0	3777	0	CHD8	14	21870134	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	1088292	21870134	85479406	871	50827										
SLC7A7	0	genome.wustl.edu	37	chr14	23249244	23249244	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catttgacataggcacagttAatgaaggttaagagacctga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	23249244	23249244	A	-	DEL	SLC7A7	ENST00000285850	human	ensembl	69_37n	-1	known	frame_shift_del	c.516	p.N173fs	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A7	HGNC	ENSG00000155465	189	0	0	134	74	35.24	-	-	-	-	23249244	A	-	23249244	7	5	569	1	0	1	0	1	0	0	0	0	14792	358	13	0	1051	0	SLC7A7	14	23249244	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	1379110	23249244	84100296	872	50828										
PRMT5	0	genome.wustl.edu	37	chr14	23393914	23393914	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagattccagattgtccatcAgtggctgatgaatgaggaaa	12	6	1	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	23393914	23393914	A	G	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	missense	c.944	p.L315P	1.000	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	245	0	0	143	70	32.86	-	-	-	G	23393914	A	G	23393914	3	3	569	1	0	0	0	0	1	0	0	0	12620	188	7	5	1005	5	PRMT5	14	23393914	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	144670	23393914	83955626	873	50829										
SLC7A8	0	genome.wustl.edu	37	chr14	23608665	23608665	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttggatgccagcagctcctGgggggacattgcagtgacat							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	23608665	23608665	G	-	DEL	SLC7A8	ENST00000316902	human	ensembl	69_37n	-1	known	frame_shift_del	c.880	p.Q294fs	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A8	HGNC	ENSG00000092068	208	0	0	156	89	35.32	-	-	-	-	23608665	G	-	23608665	7	5	569	1	0	1	0	1	0	0	0	0	14793	1357	47	0	751	0	SLC7A8	14	23608665	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	214751	23608665	83740875	874	50830										
SLC22A17	0	genome.wustl.edu	37	chr14	23816858	23816858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgcggtgccgctggccaGcagagagcacaggtagaagt	17	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	23816858	23816858	G	A	SNP	SLC22A17	ENST00000206544	human	ensembl	69_37n	-1	known	silent	c.1027	p.L343	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096	73	0	0	48	28	36.84	-	-	-	A	23816858	G	A	23816858	2	1	569	1	0	0	0	0	0	0	0	1	14537	962	34	4		4	SLC22A17	14	23816858	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	208193	23816858	83532682	875	50831										
EFS	0	genome.wustl.edu	37	chr14	23830036	23830036	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcatacagtgcccgggccaGctgggtctggttggggaggt	18	9	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	23830036	23830036	G	A	SNP	EFS	ENST00000216733	human	ensembl	69_37n	-1	known	silent	c.25	p.L9	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	26	0	0	12	8	40	-	-	-	A	23830036	G	A	23830036	2	1	569	1	0	0	0	0	0	0	0	1	4994	962	34	4		4	EFS	14	23830036	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13178	23830036	83519504	876	50832										
PCK2	0	genome.wustl.edu	37	chr14	24572012	24572012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcgattttgtgccccggctCgccagtgccccatcatggac	10	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	24572012	24572012	C	T	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	missense	c.1285	p.R429C	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	127	1	0.78	85	46	35.11	-	-	-	T	24572012	C	T	24572012	3	4	569	1	0	0	0	0	1	0	0	0	11655	884	31	1	1407	1	PCK2	14	24572012	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	741976	24572012	82777528	877	50833										
ARHGAP5	0	genome.wustl.edu	37	chr14	32561797	32561797	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcggccggttgatgccaaatCgccttactttttgagtcagt	10	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	32561797	32561797	C	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	nonsense	c.1922	p.S641*	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	223	0	0	178	74	29.37	-	-	-	A	32561797	C	A	32561797	4	1	569	1	0	0	0	0	0	1	0	0	888	893	31	3	1924	3	ARHGAP5	14	32561797	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7989785	32561797	74787743	878	50834										
CLEC14A	0	genome.wustl.edu	37	chr14	38724270	38724270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttctcgtcgaccctgattgGccatgttctctgcggcacgg	11	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	38724270	38724270	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	69_37n	-1	known	missense	c.958	p.P320S	0.005	NULL	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435	45	0	0	22	11	33.33	-	-	-	A	38724270	G	A	38724270	3	1	569	1	0	0	0	0	1	0	0	0	3529	1203	42	4	518	4	CLEC14A	14	38724270	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6162473	38724270	68625270	879	50835										
FAM179B	0	genome.wustl.edu	37	chr14	45542735	45542735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaagagtttggaggaattaCtcgatatgacaattttaaat	8	3	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	45542735	45542735	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	missense	c.5134	p.L1712F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	172	0	0	109	66	37.71	-	-	-	T	45542735	C	T	45542735	3	4	569	1	0	0	0	0	1	0	0	0	5546	565	20	4	5208	4	FAM179B	14	45542735	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6818465	45542735	61806805	880	50836										
ATL1	0	genome.wustl.edu	37	chr14	51058288	51058288	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggatactcagggaaccttTgatagtcagtcaactttgag	10	7	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	51058288	51058288	T	C	SNP	ATL1	ENST00000357032	human	ensembl	69_37n	1	known	silent	c.453	p.F151	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513	356	1	0.28	245	131	34.75	-	-	-	C	51058288	T	C	51058288	2	2	569	1	0	0	0	0	0	0	0	1	1110	1809	63	5		5	ATL1	14	51058288	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5515553	51058288	56291252	881	50837										
TMX1	0	genome.wustl.edu	37	chr14	51716427	51716427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagtgtatgatatttgtggCagattgcctttgtccttcaa	9	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	51716427	51716427	C	T	SNP	TMX1	ENST00000457354	human	ensembl	69_37n	1	known	missense	c.608	p.A203V	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX1	HGNC	ENSG00000139921	421	0	0	319	167	34.36	-	-	-	T	51716427	C	T	51716427	3	4	569	1	0	0	0	0	1	0	0	0	16361	710	25	4	634	4	TMX1	14	51716427	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	658139	51716427	55633113	882	50838										
DLGAP5	0	genome.wustl.edu	37	chr14	55655899	55655899	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaaatgtgatgaagacatcCtgtcaaggaaaaggacaaaa	9	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	55655899	55655899	C	A	SNP	DLGAP5	ENST00000247191	human	ensembl	69_37n	-1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	DLGAP5	HGNC	ENSG00000126787	279	0	0	163	103	38.72	-	-	-	A	55655899	C	A	55655899	5	1	569	1	0	0	0	0	0	0	1	0	4599	695	24	4	2708	4	DLGAP5	14	55655899	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3939472	55655899	51693641	883	50839										
C14orf37	0	genome.wustl.edu	37	chr14	58599980	58599980	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctctgataagctcgagggtAgcaacctgctcttgtgtcac	10	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	58599980	58599980	A	T	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	silent	c.1449	p.A483	0.020	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	223	0	0	158	98	38.13	-	-	-	T	58599980	A	T	58599980	2	4	569	1	0	0	0	0	0	0	0	1	1783	407	15	5		5	C14orf37	14	58599980	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2944081	58599980	48749560	884	50840										
SNAPC1	0	genome.wustl.edu	37	chr14	62245578	62245578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acatccagagatgtgaaaggGcagaatcattagcgaaaata	10	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	62245578	62245578	G	A	SNP	SNAPC1	ENST00000216294	human	ensembl	69_37n	1	known	missense	c.775	p.A259T	1.000	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	209	0	0	151	116	43.45	-	-	-	A	62245578	G	A	62245578	3	1	569	1	0	0	0	0	1	0	0	0	14923	1203	42	4	801	4	SNAPC1	14	62245578	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3645598	62245578	45103962	885	50841										
SPTB	0	genome.wustl.edu	37	chr14	65260252	65260252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggcctcgatctgcgggtgcCcaaactgcttgcgcgcaacc	13	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	65260252	65260252	C	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.2129	p.G710E	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	68	0	0	49	23	31.94	-	-	-	T	65260252	C	T	65260252	3	4	569	1	0	0	0	0	1	0	0	0	15209	623	22	4	5018	4	SPTB	14	65260252	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3014674	65260252	42089288	886	50842										
ERH	0	genome.wustl.edu	37	chr14	69847202	69847202	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacttccactacagcacgctGtacacacctgtgttccaagc	6	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	69847202	69847202	G	A	SNP	ERH	ENST00000216520	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ERH	HGNC	ENSG00000100632	246	0	0	145	89	38.03	-	-	-	A	69847202	G	A	69847202	1	1	569	0	1	0	0	0	0	0	0	0	5263	1392	48	4		4	ERH	14	69847202	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4586950	69847202	37502338	887	50843										
C14orf169	0	genome.wustl.edu	37	chr14	73959452	73959452	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggaaaactcccgtgtgtaTcatctggaagaacccaagtg	11	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	73959452	73959452	T	A	SNP	C14orf169	ENST00000531973	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242	175	0	0	90	60	40	-	-	-	A	73959452	T	A	73959452	1	1	569	0	1	0	0	0	0	0	0	0	1770	1435	50	5		5	C14orf169	14	73959452	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4112250	73959452	33390088	888	50844										
C14orf43	0	genome.wustl.edu	37	chr14	74194160	74194160	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggggcagggctgcacttaCggctcgatgctcactggggt	16	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	74194160	74194160	C	T	SNP	C14orf43	ENST00000286523	human	ensembl	69_37n	-1	known	splice_site	c.2162+1	e4+1	1.000	-	-	-	no_errors	C14orf43	HGNC	ENSG00000156030	69	0	0	40	13	24.53	-	-	-	T	74194160	C	T	74194160	5	4	569	1	0	0	0	0	0	0	1	0	1786	550	19	1	1006	1	C14orf43	14	74194160	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	234708	74194160	33155380	889	50845										
FAM161B	0	genome.wustl.edu	37	chr14	74413076	74413076	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctcctcatcttcagagaggTtttcatcactctctgggtca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	74413076	74413076	T	-	DEL	FAM161B	ENST00000286544	human	ensembl	69_37n	-1	known	frame_shift_del	c.476	p.N159fs	0.000	NULL	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050	177	0	0	146	52	25.74	-	-	-	-	74413076	T	-	74413076	7	5	569	1	0	1	0	1	0	0	0	0	5513	1725	60	0	1688	0	FAM161B	14	74413076	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	218916	74413076	32936464	890	50846										
NEK9	0	genome.wustl.edu	37	chr14	75580950	75580950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggatcaattccaaagagtActggctagagtcaacttcca	8	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	75580950	75580950	A	G	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	missense	c.829	p.Y277H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	352	0	0	232	154	39.9	-	-	-	G	75580950	A	G	75580950	3	3	569	1	0	0	0	0	1	0	0	0	10403	391	14	5	2174	5	NEK9	14	75580950	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1167874	75580950	31768590	891	50847										
JDP2	0	genome.wustl.edu	37	chr14	75904745	75904745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgaaatacgctgacatccGcaacctcggggccatgattg	11	12	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	75904745	75904745	G	A	SNP	JDP2	ENST00000267569	human	ensembl	69_37n	1	known	missense	c.155	p.R52H	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	JDP2	HGNC	ENSG00000140044	85	0	0	68	36	34.62	-	-	-	A	75904745	G	A	75904745	3	1	569	1	0	0	0	0	1	0	0	0	8001	1087	38	1	161	1	JDP2	14	75904745	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	323795	75904745	31444795	892	50848										
VASH1	0	genome.wustl.edu	37	chr14	77242496	77242496	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagctgggccagagcgtgtcAcacgacccgcacagcgtgga	14	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	77242496	77242496	A	G	SNP	VASH1	ENST00000167106	human	ensembl	69_37n	1	known	silent	c.792	p.S264	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246	17	0	0	11	9	45	-	-	-	G	77242496	A	G	77242496	2	3	569	1	0	0	0	0	0	0	0	1	17222	146	6	5		5	VASH1	14	77242496	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1337751	77242496	30107044	893	50849										
NRXN3	0	genome.wustl.edu	37	chr14	79433691	79433691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatagcctgaaagtggacaCcaaagtggtcactcaggtta	10	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	79433691	79433691	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.2885	p.T962I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	178	0	0	142	74	34.26	-	-	-	T	79433691	C	T	79433691	3	4	569	1	0	0	0	0	1	0	0	0	10740	507	18	4	1829	4	NRXN3	14	79433691	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2191195	79433691	27915849	894	50850										
PTPN21	0	genome.wustl.edu	37	chr14	88935948	88935948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaggaggtgcttcatcttcaGgcctgtggtggcatagcagc	14	9	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	88935948	88935948	G	T	SNP	PTPN21	ENST00000328736	human	ensembl	69_37n	-1	known	missense	c.3130	p.L1044M	0.990	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778	322	1	0.31	201	126	38.53	-	-	-	T	88935948	G	T	88935948	3	4	569	1	0	0	0	0	1	0	0	0	12869	991	35	4	406	4	PTPN21	14	88935948	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9502257	88935948	18413592	895	50851										
PTPN21	0	genome.wustl.edu	37	chr14	88945437	88945437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggccgctgggcctctgcggTcgtgcggacggggctgctgt	20	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	88945437	88945437	T	C	SNP	PTPN21	ENST00000328736	human	ensembl	69_37n	-1	known	missense	c.2338	p.T780A	0.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778	29	0	0	12	15	55.56	-	-	-	C	88945437	T	C	88945437	3	2	569	1	0	0	0	0	1	0	0	0	12869	1667	58	5	1214	5	PTPN21	14	88945437	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	9489	88945437	18404103	896	50852										
RPS6KA5	0	genome.wustl.edu	37	chr14	91372562	91372562	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccaatctcttcttgggatcTttcatcaaaagacgctgaat	6	11	5	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	91372562	91372562	T	G	SNP	RPS6KA5	ENST00000261991	human	ensembl	69_37n	-1	known	missense	c.888	p.K296N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784	219	0	0	184	94	33.81	-	-	-	G	91372562	T	G	91372562	3	3	569	1	0	0	0	0	1	0	0	0	13740	1606	56	5	1566	5	RPS6KA5	14	91372562	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2427125	91372562	15976978	897	50853										
MOAP1	0	genome.wustl.edu	37	chr14	93649593	93649593	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctcctcctcagctgcctcaTaatcctttattagtaccaat	3	15	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	93649593	93649593	T	C	SNP	MOAP1	ENST00000298894	human	ensembl	69_37n	-1	known	missense	c.995	p.Y332C	0.000	NULL	NULL	-	no_errors	MOAP1	HGNC	ENSG00000165943	229	0	0	145	88	37.77	-	-	-	C	93649593	T	C	93649593	3	2	569	1	0	0	0	0	1	0	0	0	9752	1406	49	5	64	5	MOAP1	14	93649593	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2277031	93649593	13699947	898	50854										
DICER1	0	genome.wustl.edu	37	chr14	95578541	95578541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtttctcacagcaaatgagaGctacaactctttcagccaat	6	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	95578541	95578541	G	A	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.2084	p.A695V	1.000	pfam_Dicer_dsRNA_binding_fold	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	271	0	0	179	122	40.53	-	-	-	A	95578541	G	A	95578541	3	1	569	1	0	0	0	0	1	0	0	0	4557	971	34	4	3744	4	DICER1	14	95578541	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1928948	95578541	11770999	899	50855										
DICER1	0	genome.wustl.edu	37	chr14	95597888	95597888	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccatctctcttttgtccaAgatgcatttacttctaggtt	5	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	95597888	95597888	A	G	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	silent	c.396	p.S132	0.997	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	472	1	0.21	326	182	35.83	-	-	-	G	95597888	A	G	95597888	2	3	569	1	0	0	0	0	0	0	0	1	4557	59	3	5		5	DICER1	14	95597888	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	19347	95597888	11751652	900	50856										
RTL1	0	genome.wustl.edu	37	chr14	101348856	101348856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcagtagacgttgtgatggCggaagcggaccaggacttgg	17	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	101348856	101348856	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.2270	p.R757H	0.933	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	292	0	0	152	133	45.86	-	-	-	T	101348856	C	T	101348856	3	4	569	1	0	0	0	0	1	0	0	0	13810	768	27	1	1810	1	RTL1	14	101348856	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5750968	101348856	6000684	901	50857										
DYNC1H1	0	genome.wustl.edu	37	chr14	102471153	102471153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atcccaaaatcaatgagtggCtcacattggtagaaaaggag	10	7	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	102471153	102471153	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.5104	p.L1702F	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	319	0	0	267	140	34.4	-	-	-	T	102471153	C	T	102471153	3	4	569	1	0	0	0	0	1	0	0	0	4876	797	28	4	5202	4	DYNC1H1	14	102471153	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1122297	102471153	4878387	902	50858										
JAG2	0	genome.wustl.edu	37	chr14	105614670	105614670	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcggacactcacgtgagtgGcaggtcttgcccttccagcc	12	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	105614670	105614670	G	A	SNP	JAG2	ENST00000331782	human	ensembl	69_37n	-1	known	silent	c.2127	p.C709	1.000	pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916	10	0	0	14	7	31.82	-	-	-	A	105614670	G	A	105614670	2	1	569	1	0	0	0	0	0	0	0	1	7989	1195	42	4		4	JAG2	14	105614670	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3143517	105614670	1734870	903	50859										
JAG2	0	genome.wustl.edu	37	chr14	105615580	105615580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaaagtcatcagggcaggcGcagtaatagtcaccctccag	10	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	105615580	105615580	G	A	SNP	JAG2	ENST00000331782	human	ensembl	69_37n	-1	known	silent	c.1680	p.C560	0.996	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916	70	0	0	37	27	42.19	-	-	-	A	105615580	G	A	105615580	2	1	569	1	0	0	0	0	0	0	0	1	7989	1079	38	1		1	JAG2	14	105615580	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	910	105615580	1733960	904	50860										
CRIP1	0	genome.wustl.edu	37	chr14	105954583	105954583	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgggaagacgctgacctctGggggccacgctgaggtaggt	18	9	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	14	105954583	105954583	G	A	SNP	CRIP1	ENST00000553228	human	ensembl	69_37n	1	known	nonsense	c.35	p.W12*	0.994	pfam_Znf_LIM	pfam_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AL928654.7	Clone_based_vega_gene	ENSG00000257341	95	0	0	51	33	39.29	-	-	-	A	105954583	G	A	105954583	4	1	569	1	0	0	0	0	0	1	0	0	3904	1348	47	4	127	4	CRIP1	14	105954583	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	339003	105954583	1394957	905	50861										
CYFIP1	0	genome.wustl.edu	37	chr15	22925811	22925811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaggtgactctggaggacgCgctgtccaacgtggacctcc	13	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	22925811	22925811	C	T	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	missense	c.29	p.A10V	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	92	0	0	55	21	27.27	-	-	-	T	22925811	C	T	22925811	3	4	569	1	0	0	0	0	1	0	0	0	4168	768	27	1	31	1	CYFIP1	15	22925811	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		22925811	79605581	906	50862										
APBA2	0	genome.wustl.edu	37	chr15	29406115	29406115	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagggggcattgctgagcgaGggggcgtccgtgtgggccac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	29406115	29406115	G	-	DEL	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	frame_shift_del	c.2074	p.G693fs	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	84	0	0	40	22	35.48	-	-	-	-	29406115	G	-	29406115	7	5	569	1	0	1	0	1	0	0	0	0	758	1000	35	0	2116	0	APBA2	15	29406115	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	6480304	29406115	73125277	907	50863										
CHRNA7	0	genome.wustl.edu	37	chr15	32450726	32450726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctactatggcctcaacctgCtgatcccctgtgtgctcatc	7	15	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	32450726	32450726	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	1	known	silent	c.799	p.L267	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	342	2	0.58	308	108	25.96	-	-	-	T	32450726	C	T	32450726	2	4	569	1	0	0	0	0	0	0	0	1	3417	796	28	4		4	CHRNA7	15	32450726	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3044611	32450726	70080666	908	50864										
FMN1	0	genome.wustl.edu	37	chr15	33359244	33359244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagcccccttcttcagcacaCgaagcccactgaaaaaagct	6	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	33359244	33359244	C	T	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	1.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	75	0	0	59	27	31.4	-	-	-	T	33359244	C	T	33359244	3	4	569	1	0	0	0	0	1	0	0	0	5995	536	19	1	2816	1	FMN1	15	33359244	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	908518	33359244	69172148	909	50865										
RYR3	0	genome.wustl.edu	37	chr15	34137183	34137183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcaggagagcaccgggtatAtggcaccaaccctgcgtgcc	12	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	34137183	34137183	A	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.13417	p.M4473V	1.000	pfam_Ryanrecept_TM4-6,superfamily_4_helix_cytokine-like_core	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	324	0	0	209	115	35.49	-	-	-	G	34137183	A	G	34137183	3	3	569	1	0	0	0	0	1	0	0	0	13856	449	16	5	13787	5	RYR3	15	34137183	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	777939	34137183	68394209	910	50866										
LPCAT4	0	genome.wustl.edu	37	chr15	34654781	34654781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggggcactcactgtgccaTgaccctctgaacattgttgg	12	11	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	34654781	34654781	T	C	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	missense	c.877	p.M293V	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	142	0	0	108	50	31.65	-	-	-	C	34654781	T	C	34654781	3	2	569	1	0	0	0	0	1	0	0	0	8979	1464	51	5	721	5	LPCAT4	15	34654781	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	517598	34654781	67876611	911	50867										
FSIP1	0	genome.wustl.edu	37	chr15	40018911	40018911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgggtgactgcaagttcaTatccttttactgggaccacc	10	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	40018911	40018911	T	C	SNP	FSIP1	ENST00000350221	human	ensembl	69_37n	-1	known	missense	c.929	p.Y310C	0.899	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	298	0	0	290	33	10.22	-	-	-	C	40018911	T	C	40018911	3	2	569	1	0	0	0	0	1	0	0	0	6123	1406	49	5	832	5	FSIP1	15	40018911	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5364130	40018911	62512481	912	50868										
BUB1B	0	genome.wustl.edu	37	chr15	40512768	40512768	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttttatatatttttaggctAaaagatggtgaattgtggaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	40512768	40512768	A	-	DEL	BUB1B	ENST00000412359	human	ensembl	69_37n	1	known	frame_shift_del	c.3003	p.D1003fs	0.976	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	200	0	0	136	85	37.44	-	-	-	-	40512768	A	-	40512768	7	5	569	1	0	1	0	1	0	0	0	0	1580	349	13	0	3051	0	BUB1B	15	40512768	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	493857	40512768	62018624	913	50869										
CASC5	0	genome.wustl.edu	37	chr15	40914893	40914893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagttgaaaaatgtggtaaaAgtcccatagaaaaaagtgga	10	3	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	40914893	40914893	A	G	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	missense	c.2509	p.S837G	0.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	136	1	0.73	107	65	37.79	-	-	-	G	40914893	A	G	40914893	3	3	569	1	0	0	0	0	1	0	0	0	2688	72	3	5	2547	5	CASC5	15	40914893	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	402125	40914893	61616499	914	50870										
MAPKBP1	0	genome.wustl.edu	37	chr15	42114459	42114459	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccctcagtgtggatggcaTctcctcagaccttgaagagc	11	13	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	42114459	42114459	T	C	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	missense	c.3086	p.I1029T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	62	0	0	35	20	35.71	-	-	-	C	42114459	T	C	42114459	3	2	569	1	0	0	0	0	1	0	0	0	9363	1435	50	5	3188	5	MAPKBP1	15	42114459	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1199566	42114459	60416933	915	50871										
CDAN1	0	genome.wustl.edu	37	chr15	43028135	43028135	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caccctgggggaaggccaagGccccaagggctagtgtccag	15	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	43028135	43028135	G	A	SNP	CDAN1	ENST00000356231	human	ensembl	69_37n	-1	known	silent	c.711	p.G237	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	256	0	0	214	140	39.33	-	-	-	A	43028135	G	A	43028135	2	1	569	1	0	0	0	0	0	0	0	1	3083	1190	42	4		4	CDAN1	15	43028135	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	913676	43028135	59503257	916	50872										
MAP1A	0	genome.wustl.edu	37	chr15	43813746	43813747	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccatttgacctactagagINSccccccacctcagggggctt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	43813746	43813747	-	C	INS	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	frame_shift_ins	c.75_76	p.T27fs	1.000:1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	230	0	0	164	79	32.51	-	-	-	C	43813747	-	C	43813746	7	5	569	1	0	1	1	0	0	0	0	0	9298	962	34	0	77	0	MAP1A	15	43813746	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	785611	43813746	58717646	917	50873										
SPG11	0	genome.wustl.edu	37	chr15	44898236	44898236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacttacctcctatagctagTgtgttagcagactgccagcc	9	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	44898236	44898236	T	C	SNP	SPG11	ENST00000559754	human	ensembl	69_37n	-1	putative	missense	c.236	p.H79R	0.750	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPG11	HGNC	ENSG00000104133	218	0	0	156	94	37.6	-	-	-	C	44898236	T	C	44898236	3	2	569	1	0	0	0	0	1	0	0	0	15132	1683	59	5	3908	5	SPG11	15	44898236	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1084490	44898236	57633156	918	50874										
CEP152	0	genome.wustl.edu	37	chr15	49081165	49081165	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgctgcttcaagctttccaGagccatttcagttgttctgg	9	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	49081165	49081165	G	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.1006	p.L336M	0.853	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	328	0	0	264	166	38.52	-	-	-	T	49081165	G	T	49081165	3	4	569	1	0	0	0	0	1	0	0	0	3277	933	33	2	4030	2	CEP152	15	49081165	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4182929	49081165	53450227	919	50875										
GCOM1	0	genome.wustl.edu	37	chr15	57921967	57921967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatcagaaatctgcagcagaCgtatgaagcatccatggaca	9	9	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	57921967	57921967	C	T	SNP	GCOM1	ENST00000380569	human	ensembl	69_37n	1	known	missense	c.593	p.T198M	0.966	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878	230	0	0	152	102	40.16	-	-	-	T	57921967	C	T	57921967	3	4	569	1	0	0	0	0	1	0	0	0	6355	536	19	1	615	1	GCOM1	15	57921967	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	8840802	57921967	44609425	920	50876										
GCOM1	0	genome.wustl.edu	37	chr15	57967241	57967241	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagtggaaaccagagagataGgagtgggctgtgatcttcta	14	5	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	57967241	57967241	G	T	SNP	GCOM1	ENST00000380569	human	ensembl	69_37n	1	known	nonsense	c.1279	p.G427*	1.000	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878	286	0	0	214	122	36.31	-	-	-	T	57967241	G	T	57967241	4	4	569	1	0	0	0	0	0	1	0	0	6355	1001	35	4	1325	4	GCOM1	15	57967241	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	45274	57967241	44564151	921	50877										
TLN2	0	genome.wustl.edu	37	chr15	63058521	63058521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acacttctctccttatcaggCcctgcaggagcagctgactt	8	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	63058521	63058521	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.5096	p.A1699V	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	62	0	0	65	9	12.16	-	-	-	T	63058521	C	T	63058521	3	4	569	1	0	0	0	0	1	0	0	0	16043	753	26	4	5246	4	TLN2	15	63058521	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5091280	63058521	39472871	922	50878										
SLC24A1	0	genome.wustl.edu	37	chr15	65917242	65917242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgacttctccaaggagcgTcatggaaaaaaacaacctgt	8	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	65917242	65917242	T	C	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	missense	c.824	p.V275A	0.000	tigrfam_K-dep_Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	111	0	0	82	42	33.6	-	-	-	C	65917242	T	C	65917242	3	2	569	1	0	0	0	0	1	0	0	0	14554	1667	58	5		5	SLC24A1	15	65917242	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2858721	65917242	36614150	923	50879										
RAB11A	0	genome.wustl.edu	37	chr15	66170177	66170177	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atatgaaaatgtagagcgatGgctgaaagaactgagagatc	12	4	0	6			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	66170177	66170177	G	A	SNP	RAB11A	ENST00000261890	human	ensembl	69_37n	1	known	nonsense	c.314	p.W105*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11A	HGNC	ENSG00000103769	312	0	0	211	118	35.87	-	-	-	A	66170177	G	A	66170177	4	1	569	1	0	0	0	0	0	1	0	0	12974	1357	47	4	324	4	RAB11A	15	66170177	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	252935	66170177	36361215	924	50880										
KIF23	0	genome.wustl.edu	37	chr15	69715526	69715526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagatccagagtttgcagatAtgataactgtacaagaattc	8	6	0	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	69715526	69715526	A	G	SNP	KIF23	ENST00000260363	human	ensembl	69_37n	1	known	missense	c.592	p.M198V	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807	143	0	0	91	45	33.09	-	-	-	G	69715526	A	G	69715526	3	3	569	1	0	0	0	0	1	0	0	0	8343	449	16	5	618	5	KIF23	15	69715526	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3545349	69715526	32815866	925	50881										
MYO9A	0	genome.wustl.edu	37	chr15	72197349	72197349	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttagcttgcttaatgatgccTgcaacagaaagcaatataat	7	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	72197349	72197349	T	C	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	splice_site	c.2686-2	e19-2	1.000	-	-	-	no_errors	MYO9A	HGNC	ENSG00000066933	352	0	0	239	145	37.76	-	-	-	C	72197349	T	C	72197349	5	2	569	1	0	0	0	0	0	0	1	0	10156	1594	55	5	5054	5	MYO9A	15	72197349	Splice_Site	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2481823	72197349	30334043	926	50882										
HEXA	0	genome.wustl.edu	37	chr15	72640419	72640419	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaggactccagctgcttgAagtcctcaccgaagcctttc	9	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	72640419	72640419	A	G	SNP	HEXA	ENST00000268097	human	ensembl	69_37n	-1	known	missense	c.1043	p.F348S	0.999	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXA	HGNC	ENSG00000213614	187	0	0	111	51	31.48	-	-	-	G	72640419	A	G	72640419	3	3	569	1	0	0	0	0	1	0	0	0	7124	246	9	5	570	5	HEXA	15	72640419	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	443070	72640419	29890973	927	50883										
HCN4	0	genome.wustl.edu	37	chr15	73615749	73615749	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggcggctacgccagctgaTggtgtgggagccgaggggga	21	8	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	73615749	73615749	T	C	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	silent	c.2685	p.P895	0.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	23	0	0	19	6	24	-	-	-	C	73615749	T	C	73615749	2	2	569	1	0	0	0	0	0	0	0	1	7050	1451	51	5		5	HCN4	15	73615749	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	975330	73615749	28915643	928	50884										
SCAPER	0	genome.wustl.edu	37	chr15	77057327	77057327	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctaacaatttctgaagcttcAatgttttctcttcgcgtaac	5	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	77057327	77057327	A	G	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.1700	p.L567S	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	315	0	0	252	127	33.51	-	-	-	G	77057327	A	G	77057327	3	3	569	1	0	0	0	0	1	0	0	0	13965	131	5	5	2578	5	SCAPER	15	77057327	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3441578	77057327	25474065	929	50885										
ACSBG1	0	genome.wustl.edu	37	chr15	78465994	78465994	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcccacttctggatgtggTagggccgggccgccgcgttc	16	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	78465994	78465994	T	C	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	missense	c.2030	p.Y677C	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	169	0	0	94	73	43.71	-	-	-	C	78465994	T	C	78465994	3	2	569	1	0	0	0	0	1	0	0	0	173	1638	57	5	152	5	ACSBG1	15	78465994	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1408667	78465994	24065398	930	50886										
IL16	0	genome.wustl.edu	37	chr15	81598930	81598930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgtgctctccagttgtgggCatgtggccaggcccccaaaa	13	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	81598930	81598930	C	T	SNP	IL16	ENST00000558332	human	ensembl	69_37n	1	putative	missense	c.1757	p.A586V	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,prints_Interleukin-16,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IL16	HGNC	ENSG00000172349	113	0	0	67	30	30.93	-	-	-	T	81598930	C	T	81598930	3	4	569	1	0	0	0	0	1	0	0	0	7687	725	25	4		4	IL16	15	81598930	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3132936	81598930	20932462	931	50887										
AKAP13	0	genome.wustl.edu	37	chr15	86227941	86227941	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttaacttctgtagccctttAaaaaaaatcaatcttcttgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	86227941	86227941	A	-	DEL	AKAP13	ENST00000558092	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	AKAP13	HGNC	ENSG00000170776	94	0	0	66	39	36.45	-	-	-	-	86227941	A	-	86227941	6	5	569	0	1	1	0	1	0	0	0	0	449	377	13	0		0	AKAP13	15	86227941	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	4629011	86227941	16303451	932	50888										
MRPL46	0	genome.wustl.edu	37	chr15	89002773	89002773	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atattacctgcaaatgtgagGcaatcacacaatgtccttga	7	9	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	89002773	89002773	G	A	SNP	MRPL46	ENST00000559538	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPL46	Clone_based_vega_gene	ENSG00000259494	102	0	0	77	41	34.75	-	-	-	A	89002773	G	A	89002773	1	1	569	0	1	0	0	0	0	0	0	0	9882	1218	42	4		4	MRPL46	15	89002773	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2774832	89002773	13528619	933	50889										
ZNF710	0	genome.wustl.edu	37	chr15	90617350	90617350	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgggttgatgtgttctaggtGtgcgggaagtccttcaaccg	15	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	90617350	90617350	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	silent	c.1653	p.V551	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	84	0	0	49	20	28.99	-	-	-	A	90617350	G	A	90617350	2	1	569	1	0	0	0	0	0	0	0	1	18211	1364	48	4		4	ZNF710	15	90617350	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1614577	90617350	11914042	934	50890										
IQGAP1	0	genome.wustl.edu	37	chr15	91019924	91019925	+	Frame_Shift_Ins	INS	-	-	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccacagtaaaaaacttaccINSaaaaaaaataaggaacagtt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	91019924	91019925	-	A	INS	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	frame_shift_ins	c.2814_2815	p.N940fs	0.998:1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	186	0	0	145	76	34.39	-	-	-	A	91019925	-	A	91019924	7	5	569	1	0	1	1	0	0	0	0	0	7868	581	21	0	2908	0	IQGAP1	15	91019924	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	402574	91019924	11511468	935	50891										
FES	0	genome.wustl.edu	37	chr15	91436997	91436997	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcagcctcagggggcctcaGacaagtccccgtgaagtgga	14	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	91436997	91436997	G	T	SNP	FES	ENST00000328850	human	ensembl	69_37n	1	known	missense	c.2159	p.R720I	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	FES	HGNC	ENSG00000182511	37	0	0	19	22	53.66	-	-	-	T	91436997	G	T	91436997	3	4	569	1	0	0	0	0	1	0	0	0	5866	942	33	2	2221	2	FES	15	91436997	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	417073	91436997	11094395	936	50892										
MAN2A2	0	genome.wustl.edu	37	chr15	91450543	91450543	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgtgtctcctgcagactcGgactccagcacagacatctt	10	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	91450543	91450543	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	silent	c.1014	p.S338	0.004	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	72	0	0	50	24	32	-	-	-	A	91450543	G	A	91450543	2	1	569	1	0	0	0	0	0	0	0	1	9286	1103	39	1		1	MAN2A2	15	91450543	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13546	91450543	11080849	937	50893										
ADAMTS17	0	genome.wustl.edu	37	chr15	100514630	100514630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgagttcggcggtggctggcGcatcttgtttgcatagaagt	15	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	15	100514630	100514630	G	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.3265	p.R1089C	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	142	1	0.7	70	65	47.1	-	-	-	A	100514630	G	A	100514630	3	1	569	1	0	0	0	0	1	0	0	0	262	1087	38	1	26	1	ADAMTS17	15	100514630	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9064087	100514630	2016762	938	50894										
MPG	0	genome.wustl.edu	37	chr16	133162	133163	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcaaggggtggccggcagaINSccccccgcaaccgaggcatg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	133162	133163	-	C	INS	MPG	ENST00000219431	human	ensembl	69_37n	1	known	frame_shift_ins	c.427_428	p.R145fs	1.000:1.000	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	-	no_errors	MPG	HGNC	ENSG00000103152	92	0	0	80	30	27.27	-	-	-	C	133163	-	C	133162	7	5	569	1	0	1	1	0	0	0	0	0	9796	275	10	0	465	0	MPG	16	133162	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09		133162	90221591	939	50895										
HBA2	0	genome.wustl.edu	37	chr16	223495	223495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taagccactgcctgctggtgAccctggccgcccacctcccc	9	20	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	223495	223495	A	G	SNP	HBA2	ENST00000251595	human	ensembl	69_37n	1	known	missense	c.325	p.T109A	0.917	superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_pi	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a,prints_Haemoglobin_pi	-	no_errors	HBA2	HGNC	ENSG00000188536	96	0	0	64	35	34.65	-	-	-	G	223495	A	G	223495	3	3	569	1	0	0	0	0	1	0	0	0	7028	275	10	5	335	5	HBA2	16	223495	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	90333	223495	90131258	940	50896										
ITFG3	0	genome.wustl.edu	37	chr16	314098	314098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggggtccactgtccgccagCctgccgaccgcagaccaccg	13	18	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	314098	314098	C	T	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	silent	c.1272	p.S424	0.510	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	61	0	0	25	15	37.5	-	-	-	T	314098	C	T	314098	2	4	569	1	0	0	0	0	0	0	0	1	7925	738	26	4		4	ITFG3	16	314098	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	90603	314098	90040655	941	50897										
ITFG3	0	genome.wustl.edu	37	chr16	314835	314835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgtttgagccaagccgccaCgccgcctacatccttctgac	8	17	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	314835	314835	C	T	SNP	ITFG3	ENST00000424016	human	ensembl	69_37n	1	novel	missense	c.392	p.T131M	0.785	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITFG3	HGNC	ENSG00000167930	46	0	0	22	18	45	-	-	-	T	314835	C	T	314835	3	4	569	1	0	0	0	0	1	0	0	0	7925	535	19	1	1515	1	ITFG3	16	314835	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	737	314835	90039918	942	50898										
CACNA1H	0	genome.wustl.edu	37	chr16	1261574	1261574	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgcccactaccgctgggtgCgacgcaagtacaacttcgac	10	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	1261574	1261574	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	nonsense	c.4444	p.R1482*	0.929	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	48	0	0	24	18	42.86	-	-	-	T	1261574	C	T	1261574	4	4	569	1	0	0	0	0	0	1	0	0	2570	760	27	1	4530	1	CACNA1H	16	1261574	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	946739	1261574	89093179	943	50899										
E4F1	0	genome.wustl.edu	37	chr16	2283890	2283890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtggttccccagcaggtggCcagcgaggcctcagcggtgc	16	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	2283890	2283890	C	T	SNP	E4F1	ENST00000301727	human	ensembl	69_37n	1	known	missense	c.1274	p.A425V	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967	40	0	0	20	12	37.5	-	-	-	T	2283890	C	T	2283890	3	4	569	1	0	0	0	0	1	0	0	0	4909	739	26	4	1308	4	E4F1	16	2283890	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1022316	2283890	88070863	944	50900										
E4F1	0	genome.wustl.edu	37	chr16	2285081	2285081	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccttctgcccatctgcccaGgccactgcggacgatgcgga	11	16	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	2285081	2285081	G	A	SNP	E4F1	ENST00000301727	human	ensembl	69_37n	1	known	splice_site	c.1936-1	e13-1	1.000	-	-	-	no_errors	E4F1	HGNC	ENSG00000167967	25	0	0	17	14	45.16	-	-	-	A	2285081	G	A	2285081	5	1	569	1	0	0	0	0	0	0	1	0	4909	1014	35	4	1985	4	E4F1	16	2285081	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1191	2285081	88069672	945	50901										
NTN3	0	genome.wustl.edu	37	chr16	2522741	2522741	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcccgccgctgccgcttcaAcatggagctgtaccgactgt	11	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	2522741	2522741	A	T	SNP	NTN3	ENST00000293973	human	ensembl	69_37n	1	known	missense	c.968	p.N323I	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN3	HGNC	ENSG00000162068	18	0	0	9	4	30.77	-	-	-	T	2522741	A	T	2522741	3	4	569	1	0	0	0	0	1	0	0	0	10774	43	2	5	974	5	NTN3	16	2522741	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	237660	2522741	87832012	946	50902										
VASN	0	genome.wustl.edu	37	chr16	4430999	4430999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agacagtcttctgcactgccCgccaggggaccacggtgccc	12	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	4430999	4430999	C	T	SNP	VASN	ENST00000304735	human	ensembl	69_37n	1	known	missense	c.121	p.R41C	0.997	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140	12	0	0	14	4	22.22	-	-	-	T	4430999	C	T	4430999	3	4	569	1	0	0	0	0	1	0	0	0	17224	652	23	1	123	1	VASN	16	4430999	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1908258	4430999	85923754	947	50903										
C16orf5	0	genome.wustl.edu	37	chr16	4563017	4563017	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccctggcgtgtagggccctGgggggtagtagcccatgggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	4563017	4563017	G	-	DEL	C16orf5	ENST00000399599	human	ensembl	69_37n	-1	known	frame_shift_del	c.290	p.P97fs	0.740	NULL	pfam_LITAF,smart_LITAF	-	no_errors	C16orf5	HGNC	ENSG00000089486	29	0	0	22	8	25.81	-	-	-	-	4563017	G	-	4563017	7	5	569	1	0	1	0	1	0	0	0	0	1830	1348	47	0	344	0	C16orf5	16	4563017	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	132018	4563017	85791736	948	50904										
ZC3H7A	0	genome.wustl.edu	37	chr16	11852388	11852388	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttcccagaagcaatatggTtgcacagctgtataaaaaaa	7	7	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	11852388	11852388	T	C	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.2327	p.N776S	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	209	0	0	126	73	36.5	-	-	-	C	11852388	T	C	11852388	3	2	569	1	0	0	0	0	1	0	0	0	17668	1725	60	5	604	5	ZC3H7A	16	11852388	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7289371	11852388	78502365	949	50905										
RRN3	0	genome.wustl.edu	37	chr16	15157141	15157141	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatcaatgaatttctttgacCtgtcaacaaagatcacattt	5	8	4	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	15157141	15157141	C	A	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	splice_site	c.1707-1	e17-1	1.000	-	-	-	no_errors	RRN3	HGNC	ENSG00000085721	274	0	0	175	94	34.94	-	-	-	A	15157141	C	A	15157141	5	1	569	1	0	0	0	0	0	0	1	0	13770	695	24	4	257	4	RRN3	16	15157141	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3304753	15157141	75197612	950	50906										
RRN3	0	genome.wustl.edu	37	chr16	15162055	15162055	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagcaaaaaagttaaccacTgagggcaggcaaatcttcag	10	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	15162055	15162055	T	C	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	silent	c.1524	p.S508	0.000	pfam_RNA_pol_I_trans_ini_fac_RRN3	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	34	0	0	23	13	36.11	-	-	-	C	15162055	T	C	15162055	2	2	569	1	0	0	0	0	0	0	0	1	13770	1567	55	5		5	RRN3	16	15162055	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	4914	15162055	75192698	951	50907										
PDZD9	0	genome.wustl.edu	37	chr16	21995786	21995786	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acgtcacaattaatgtctttTcctacactaatagtatggtt	5	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	21995786	21995786	T	G	SNP	PDZD9	ENST00000424898	human	ensembl	69_37n	-1	known	silent	c.597	p.G199	0.767	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD9	HGNC	ENSG00000155714	398	0	0	283	202	41.48	-	-	-	G	21995786	T	G	21995786	2	3	569	1	0	0	0	0	0	0	0	1	11779	1770	62	5		5	PDZD9	16	21995786	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6833731	21995786	68358967	952	50908										
EEF2K	0	genome.wustl.edu	37	chr16	22295258	22295258	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgatggaagccatgaagggcCgactggccaaccagtactac	12	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	22295258	22295258	C	A	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	silent	c.2119	p.R707	1.000	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	96	0	0	66	40	37.74	-	-	-	A	22295258	C	A	22295258	2	1	569	1	0	0	0	0	0	0	0	1	4965	644	23	3		3	EEF2K	16	22295258	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	299472	22295258	68059495	953	50909										
SCNN1B	0	genome.wustl.edu	37	chr16	23391803	23391803	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggatggggggctctgtgcTgtgcctcatcgagtttgggg	18	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	23391803	23391803	T	G	SNP	SCNN1B	ENST00000307331	human	ensembl	69_37n	1	known	missense	c.1739	p.L580R	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447	144	0	0	84	47	35.88	-	-	-	G	23391803	T	G	23391803	3	3	569	1	0	0	0	0	1	0	0	0	14016	1580	55	5	1650	5	SCNN1B	16	23391803	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1096545	23391803	66962950	954	50910										
IL4R	0	genome.wustl.edu	37	chr16	27357881	27357881	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccgtatccccctgacaattAcctgtataatcatctcacct	3	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	27357881	27357881	A	G	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	missense	c.455	p.Y152C	0.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	254	0	0	152	99	39.29	-	-	-	G	27357881	A	G	27357881	3	3	569	1	0	0	0	0	1	0	0	0	7752	391	14	5	469	5	IL4R	16	27357881	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3966078	27357881	62996872	955	50911										
GTF3C1	0	genome.wustl.edu	37	chr16	27512666	27512666	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccatgatcatcttctgaatcCtgggcatcacaaaataagca	6	11	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	27512666	27512666	C	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	splice_site	c.1908-1	e12-1	1.000	-	-	-	no_errors	GTF3C1	HGNC	ENSG00000077235	145	1	0.68	74	42	36.21	-	-	-	A	27512666	C	A	27512666	5	1	569	1	0	0	0	0	0	0	1	0	6923	695	24	4	4526	4	GTF3C1	16	27512666	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	154785	27512666	62842087	956	50912										
IL27	0	genome.wustl.edu	37	chr16	28511194	28511194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctcctcctcctcctcctcCtcttcctcctcctcctcctc	0	26	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	28511194	28511194	C	T	SNP	IL27	ENST00000356897	human	ensembl	69_37n	-1	known	silent	c.510	p.E170	0.003	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	IL27	HGNC	ENSG00000197272	27	0	0	14	8	36.36	-	-	-	T	28511194	C	T	28511194	2	4	569	1	0	0	0	0	0	0	0	1	7734	680	24	4		4	IL27	16	28511194	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	998528	28511194	61843559	957	50913										
C16orf53	0	genome.wustl.edu	37	chr16	29828310	29828312	+	In_Frame_Del	DEL	AAG	AAG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgatgaggagccggaggccaAagaagaggaagaggaaaagt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	29828310	29828312	AAG	-	DEL	C16orf53	ENST00000320330	human	ensembl	69_37n	1	known	in_frame_del	c.464_466	p.E159in_frame_del	0.998:1.000:1.000	NULL	NULL	-	no_errors	C16orf53	HGNC	ENSG00000185928	92	0	0	55	25	30.49	-	-	-	-	29828312	AAG	-	29828310	7	5	569	1	0	1	0	1	0	0	0	0	1831	14	1	0	466	0	C16orf53	16	29828310	In_Frame_Del	DEL	AAG	TCGA-BH-A18G-01A-11D-A12B-09	1317116	29828310	60526443	958	50914										
TAOK2	0	genome.wustl.edu	37	chr16	29992997	29992997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtagctgaacggaaaccacCgctctttaacatgaatgcga	9	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	29992997	29992997	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	missense	c.671	p.P224L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	468	0	0	316	190	37.55	-	-	-	T	29992997	C	T	29992997	3	4	569	1	0	0	0	0	1	0	0	0	15640	652	23	1	701	1	TAOK2	16	29992997	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	164687	29992997	60361756	959	50915										
ALDOA	0	genome.wustl.edu	37	chr16	30080962	30080962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgccatggcgaccgtcacagCgctgcgccgcacagtgcccc	12	18	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	30080962	30080962	C	T	SNP	ALDOA	ENST00000338110	human	ensembl	69_37n	1	known	missense	c.767	p.A256V	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	134	0	0	65	43	39.81	-	-	-	T	30080962	C	T	30080962	3	4	569	1	0	0	0	0	1	0	0	0	507	768	27	1	789	1	ALDOA	16	30080962	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	87965	30080962	60273791	960	50916										
ZNF668	0	genome.wustl.edu	37	chr16	31072662	31072662	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgctcgtgccgacgcagcagCgtcattgtggagaaggtctc	14	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	31072662	31072662	C	T	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	silent	c.1656	p.T552	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	31	0	0	19	12	38.71	-	-	-	T	31072662	C	T	31072662	2	4	569	1	0	0	0	0	0	0	0	1	18171	755	27	1		1	ZNF668	16	31072662	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	991700	31072662	59282091	961	50917										
ZNF646	0	genome.wustl.edu	37	chr16	31091534	31091534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaaaggcgactcgggaagatCggcccttccgctgtgggcag	16	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	31091534	31091534	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.3889	p.R1297W	0.199	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	23	0	0	19	10	34.48	-	-	-	T	31091534	C	T	31091534	3	4	569	1	0	0	0	0	1	0	0	0	18158	875	31	1	3891	1	ZNF646	16	31091534	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	18872	31091534	59263219	962	50918										
PRSS36	0	genome.wustl.edu	37	chr16	31160508	31160508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaggccaggtgcccggctgcGcgtttgagccccccacgatg	14	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	31160508	31160508	G	A	SNP	PRSS36	ENST00000268281	human	ensembl	69_37n	-1	known	missense	c.158	p.A53V	0.264	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS36	HGNC	ENSG00000178226	14	0	0	12	5	29.41	-	-	-	A	31160508	G	A	31160508	3	1	569	1	0	0	0	0	1	0	0	0	12705	1087	38	1	2457	1	PRSS36	16	31160508	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	68974	31160508	59194245	963	50919										
ITGAM	0	genome.wustl.edu	37	chr16	31342567	31342567	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgtcgggggactgctgctcCtggccctcatcaccgccgcg	13	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	31342567	31342567	C	T	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	silent	c.3361	p.L1121	0.964	prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	52	0	0	27	26	49.06	-	-	-	T	31342567	C	T	31342567	2	4	569	1	0	0	0	0	0	0	0	1	7941	680	24	4		4	ITGAM	16	31342567	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	182059	31342567	59012186	964	50920										
ITGAX	0	genome.wustl.edu	37	chr16	31374656	31374656	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgctgtctacctgtttcaCggagtcttgggacccagcat	12	11	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	31374656	31374656	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.1671	p.H557	0.527	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	205	1	0.49	135	71	34.3	-	-	-	T	31374656	C	T	31374656	2	4	569	1	0	0	0	0	0	0	0	1	7943	535	19	1		1	ITGAX	16	31374656	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	32089	31374656	58980097	965	50921										
PHKB	0	genome.wustl.edu	37	chr16	47682455	47682455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcttacaggcttatttgcaGctgggtatcaatgaaaagtt	10	6	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	47682455	47682455	G	A	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	1	known	silent	c.1620	p.Q540	0.989	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	261	0	0	195	101	34.12	-	-	-	A	47682455	G	A	47682455	2	1	569	1	0	0	0	0	0	0	0	1	11919	962	34	4		4	PHKB	16	47682455	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	16307799	47682455	42672298	966	50922										
ADCY7	0	genome.wustl.edu	37	chr16	50324419	50324419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcgttcctggtgctggcgGtgtttgcggccctctctgtg	16	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	50324419	50324419	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.223	p.V75M	0.141	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	174	0	0	117	69	37.1	-	-	-	A	50324419	G	A	50324419	3	1	569	1	0	0	0	0	1	0	0	0	299	1261	44	4	229	4	ADCY7	16	50324419	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2641964	50324419	40030334	967	50923										
ADCY7	0	genome.wustl.edu	37	chr16	50324499	50324499	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccttggcgctgctcacctgGgcctgcttggtggcgctggg	17	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	50324499	50324499	G	T	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.303	p.W101C	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	212	0	0	114	94	44.98	-	-	-	T	50324499	G	T	50324499	3	4	569	1	0	0	0	0	1	0	0	0	299	1241	43	4	309	4	ADCY7	16	50324499	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	80	50324499	40030254	968	50924										
CYLD	0	genome.wustl.edu	37	chr16	50783750	50783750	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtaccgaagggaagtataggAcagtatattcaagatcgttc	11	6	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	50783750	50783750	A	G	SNP	CYLD	ENST00000311559	human	ensembl	69_37n	1	known	silent	c.141	p.G47	0.961	NULL	pfam_CAP-Gly_domain,pfam_Peptidase_C19,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19	-	no_errors	CYLD	HGNC	ENSG00000083799	223	0	0	203	107	34.52	-	-	-	G	50783750	A	G	50783750	2	3	569	1	0	0	0	0	0	0	0	1	4174	262	10	5		5	CYLD	16	50783750	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	459251	50783750	39571003	969	50925										
SALL1	0	genome.wustl.edu	37	chr16	51185093	51185093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaccatctcgccgggggagCgaggccacttcggggtcgga	16	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	51185093	51185093	C	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	silent	c.60	p.S20	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	61	0	0	45	23	33.82	-	-	-	T	51185093	C	T	51185093	2	4	569	1	0	0	0	0	0	0	0	1	13896	755	27	1		1	SALL1	16	51185093	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	401343	51185093	39169660	970	50926										
CHD9	0	genome.wustl.edu	37	chr16	53283933	53283933	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacttaactgcagctgatacAtgtataatttttgattctga	6	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	53283933	53283933	A	G	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	silent	c.3816	p.T1272	0.966	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	222	0	0	151	87	36.55	-	-	-	G	53283933	A	G	53283933	2	3	569	1	0	0	0	0	0	0	0	1	3361	204	8	5		5	CHD9	16	53283933	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2098840	53283933	37070820	971	50927										
OGFOD1	0	genome.wustl.edu	37	chr16	56487178	56487178	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtttttcttccaacagaagTcattgtcatggacatggacc	8	9	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	56487178	56487178	T	C	SNP	OGFOD1	ENST00000566157	human	ensembl	69_37n	1	known	missense	c.158	p.V53A	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263	201	0	0	164	79	32.51	-	-	-	C	56487178	T	C	56487178	3	2	569	1	0	0	0	0	1	0	0	0	10914	1667	58	5	164	5	OGFOD1	16	56487178	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3203245	56487178	33867575	972	50928										
RSPRY1	0	genome.wustl.edu	37	chr16	57272810	57272810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtgacctgtgcatggattgtGccttgcagctggagacctgc	14	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	57272810	57272810	G	A	SNP	RSPRY1	ENST00000394420	human	ensembl	69_37n	1	known	missense	c.1654	p.A552T	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RSPRY1	HGNC	ENSG00000159579	185	0	0	137	74	35.07	-	-	-	A	57272810	G	A	57272810	3	1	569	1	0	0	0	0	1	0	0	0	13799	1319	46	4	1708	4	RSPRY1	16	57272810	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	785632	57272810	33081943	973	50929										
CNOT1	0	genome.wustl.edu	37	chr16	58581178	58581178	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttaacataagcctctagcAgcaatgatttcacatccaag	5	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	58581178	58581178	A	G	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.3662	p.L1221P	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	123	0	0	93	44	32.12	-	-	-	G	58581178	A	G	58581178	3	3	569	1	0	0	0	0	1	0	0	0	3647	188	7	5	3782	5	CNOT1	16	58581178	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1308368	58581178	31773575	974	50930										
RLTPR	0	genome.wustl.edu	37	chr16	67684005	67684005	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccctgcctcttctgaccaCacgacccgccttcagccact	6	20	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	67684005	67684005	C	T	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	silent	c.2136	p.H712	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	160	1	0.62	132	64	32.65	-	-	-	T	67684005	C	T	67684005	2	4	569	1	0	0	0	0	0	0	0	1	13480	477	17	4		4	RLTPR	16	67684005	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	9102827	67684005	22670748	975	50931										
ESRP2	0	genome.wustl.edu	37	chr16	68265114	68265114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtggaggggacatgccacTgcggcccaaggtgcccccca	16	14	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	68265114	68265114	T	C	SNP	ESRP2	ENST00000565858	human	ensembl	69_37n	-1	known	missense	c.1708	p.S570G	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	137	0	0	86	40	31.75	-	-	-	C	68265114	T	C	68265114	3	2	569	1	0	0	0	0	1	0	0	0	5296	1580	55	5	491	5	ESRP2	16	68265114	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	581109	68265114	22089639	976	50932										
TMCO7	0	genome.wustl.edu	37	chr16	68961618	68961618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagcctttgccactgaggccGtcagcatggctgcccaaagt	12	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	68961618	68961618	G	A	SNP	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	missense	c.2275	p.V759I	0.924	superfamily_ARM-type_fold	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	215	0	0	127	76	37.44	-	-	-	A	68961618	G	A	68961618	3	1	569	1	0	0	0	0	1	0	0	0	16096	1145	40	1	2325	1	TMCO7	16	68961618	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	696504	68961618	21393135	977	50933										
TMCO7	0	genome.wustl.edu	37	chr16	68961634	68961634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccgtcagcatggctgcccAaagtacactgaacagaaaag	11	11	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	68961634	68961634	A	G	SNP	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	missense	c.2291	p.Q764R	0.965	superfamily_ARM-type_fold	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	202	2	0.98	120	57	31.67	-	-	-	G	68961634	A	G	68961634	3	3	569	1	0	0	0	0	1	0	0	0	16096	130	5	5	2341	5	TMCO7	16	68961634	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	16	68961634	21393119	978	50934										
VAC14	0	genome.wustl.edu	37	chr16	70722098	70722098	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agccacaggctggtgggctcGgcctgtgggcgtctgtctca	16	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	70722098	70722098	G	A	SNP	VAC14	ENST00000571759	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VAC14	HGNC	ENSG00000103043	86	0	0	58	38	39.58	-	-	-	A	70722098	G	A	70722098	1	1	569	0	1	0	0	0	0	0	0	0	17208	1131	39	1		1	VAC14	16	70722098	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1760464	70722098	19632655	979	50935										
HYDIN	0	genome.wustl.edu	37	chr16	71007882	71007882	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcatggttggaatggtcacCttggcttggagacagatgtg	15	6	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	71007882	71007882	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.5076	p.K1692N	0.242	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	287	0	0	379	48	11.21	-	-	-	A	71007882	C	A	71007882	3	1	569	1	0	0	0	0	1	0	0	0	7521	680	24	4	10498	4	HYDIN	16	71007882	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	285784	71007882	19346871	980	50936										
MARVELD3	0	genome.wustl.edu	37	chr16	71663366	71663366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggaaggactcctggaatgCcacaaatgcaaatacttgtg	11	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	71663366	71663366	C	T	SNP	MARVELD3	ENST00000565261	human	ensembl	69_37n	1	putative	missense	c.401	p.A134V	1.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832	142	1	0.7	106	55	34.16	-	-	-	T	71663366	C	T	71663366	3	4	569	1	0	0	0	0	1	0	0	0	9390	747	26	4	570	4	MARVELD3	16	71663366	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	655484	71663366	18691387	981	50937										
ZNF821	0	genome.wustl.edu	37	chr16	71894267	71894267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttggcttcacggtccctcAtgcgcctcacctcccgctcc	8	20	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	71894267	71894267	A	G	SNP	ZNF821	ENST00000425432	human	ensembl	69_37n	-1	known	missense	c.893	p.M298T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984	49	0	0	29	20	40	-	-	-	G	71894267	A	G	71894267	3	3	569	1	0	0	0	0	1	0	0	0	18271	217	8	5	349	5	ZNF821	16	71894267	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	230901	71894267	18460486	982	50938										
ZFHX3	0	genome.wustl.edu	37	chr16	72822441	72822441	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccctttccctttgtgtgccTtttccttctcctttactttc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	72822441	72822441	T	-	DEL	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	frame_shift_del	c.9734	p.K3245fs	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	322	1	0.31	191	108	35.29	-	-	-	-	72822441	T	-	72822441	7	5	569	1	0	1	0	1	0	0	0	0	17730	1609	56	0	1381	0	ZFHX3	16	72822441	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	928174	72822441	17532312	983	50939										
ZFHX3	0	genome.wustl.edu	37	chr16	72991442	72991442	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggttgggcaggttcatgttcTgggccaggtagtattggtag	17	5	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	72991442	72991442	T	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.2603	p.Q868L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	366	0	0	239	147	37.98	-	-	-	A	72991442	T	A	72991442	3	1	569	1	0	0	0	0	1	0	0	0	17730	1580	55	5	8544	5	ZFHX3	16	72991442	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	169001	72991442	17363311	984	50940										
ZFHX3	0	genome.wustl.edu	37	chr16	72991573	72991573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttatgcatgtgcttctcactGgtcatgtgaatgcggaggtt	12	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	72991573	72991573	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.2472	p.T824	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	351	0	0	221	142	39.01	-	-	-	A	72991573	G	A	72991573	2	1	569	1	0	0	0	0	0	0	0	1	17730	1335	47	4		4	ZFHX3	16	72991573	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	131	72991573	17363180	985	50941										
BCAR1	0	genome.wustl.edu	37	chr16	75271166	75271166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccggggccagcaggtgtcgcGggatgtcgtactcgtcctgc	16	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	75271166	75271166	G	A	SNP	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	missense	c.848	p.P283L	0.996	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	40	0	0	21	16	41.03	-	-	-	A	75271166	G	A	75271166	3	1	569	1	0	0	0	0	1	0	0	0	1352	1116	39	1	1976	1	BCAR1	16	75271166	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2279593	75271166	15083587	986	50942										
CHST5	0	genome.wustl.edu	37	chr16	75563186	75563186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggcgcacacctcctgcacgCgcaggatcttagtgaagggc	13	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	75563186	75563186	C	T	SNP	CHST5	ENST00000541075	human	ensembl	69_37n	-1	known	missense	c.1115	p.R372H	0.513	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702	19	0	0	15	7	31.82	-	-	-	T	75563186	C	T	75563186	3	4	569	1	0	0	0	0	1	0	0	0	3436	768	27	1	142	1	CHST5	16	75563186	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	292020	75563186	14791567	987	50943										
TERF2IP	0	genome.wustl.edu	37	chr16	75690320	75690320	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acagttacacaggccttcctAaaaaatagtggtgagctgga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	75690320	75690320	A	-	DEL	TERF2IP	ENST00000300086	human	ensembl	69_37n	1	putative	frame_shift_del	c.1011	p.N339fs	0.723	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848	155	0	0	144	59	28.5	-	-	-	-	75690320	A	-	75690320	7	5	569	1	0	1	0	1	0	0	0	0	15858	349	13	0	1021	0	TERF2IP	16	75690320	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	127134	75690320	14664433	988	50944										
ADAD2	0	genome.wustl.edu	37	chr16	84228109	84228109	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggtctgccctgcgggcacTgcgaatagcaagacggaggc	16	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	84228109	84228109	T	C	SNP	ADAD2	ENST00000567685	human	ensembl	69_37n	1	novel	missense	c.254	p.L85P	0.000	pfam_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_A_deamin,pfam_Ds-RNA-bd,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_start_codon:pseudogene:no_stop_codon	ADAD2	HGNC	ENSG00000140955	75	0	0	57	42	42.42	-	-	-	C	84228109	T	C	84228109	3	2	569	1	0	0	0	0	1	0	0	0	232	1567	55	5	706	5	ADAD2	16	84228109	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	8537789	84228109	6126644	989	50945										
KIAA0182	0	genome.wustl.edu	37	chr16	85695039	85695039	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggccacggaagcgtgagcCtgcccctctggacaagtacc	14	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	85695039	85695039	C	A	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	missense	c.1928	p.P643H	0.515	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	8	0	0	6	5	45.45	-	-	-	A	85695039	C	A	85695039	3	1	569	1	0	0	0	0	1	0	0	0	8211	681	24	4	1962	4	KIAA0182	16	85695039	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1466930	85695039	4659714	990	50946										
CDT1	0	genome.wustl.edu	37	chr16	88871904	88871904	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggcccagcccggcctgcCgggactcgtgctgccctaca	12	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	88871904	88871904	C	A	SNP	CDT1	ENST00000301019	human	ensembl	69_37n	1	known	missense	c.545	p.P182Q	0.997	NULL	pfam_CDT1_Gemini-bd-like	-	no_errors	CDT1	HGNC	ENSG00000167513	34	0	0	16	13	44.83	-	-	-	A	88871904	C	A	88871904	3	1	569	1	0	0	0	0	1	0	0	0	3209	652	23	3	559	3	CDT1	16	88871904	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3176865	88871904	1482849	991	50947										
PABPN1L	0	genome.wustl.edu	37	chr16	88932785	88932785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggcaatgggcactcagccAggttctcttgctccagcaga	11	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	88932785	88932785	A	G	SNP	PABPN1L	ENST00000427766	human	ensembl	69_37n	-1	known	missense	c.230	p.L77P	0.083	NULL	NULL	-	no_errors	PABPN1L	HGNC	ENSG00000205022	162	0	0	92	68	42.24	-	-	-	G	88932785	A	G	88932785	3	3	569	1	0	0	0	0	1	0	0	0	11442	188	7	5	666	5	PABPN1L	16	88932785	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	60881	88932785	1421968	992	50948										
ACSF3	0	genome.wustl.edu	37	chr16	89178653	89178653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtttgtgaagaaaaaattAggtaagtgaaaagagcccac	10	5	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	89178653	89178653	A	G	SNP	ACSF3	ENST00000317447	human	ensembl	69_37n	1	known	missense	c.976	p.R326G	0.995	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	134	0	0	94	40	29.85	-	-	-	G	89178653	A	G	89178653	3	3	569	1	0	0	0	0	1	0	0	0	176	434	15	5	986	5	ACSF3	16	89178653	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	245868	89178653	1176100	993	50949										
ANKRD11	0	genome.wustl.edu	37	chr16	89347283	89347283	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctctgggggaaggggaaggTtttgcttgtaaacttgagaa	16	4	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	89347283	89347283	T	C	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	silent	c.5667	p.K1889	0.993	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	63	0	0	35	29	42.65	-	-	-	C	89347283	T	C	89347283	2	2	569	1	0	0	0	0	0	0	0	1	639	1722	60	5		5	ANKRD11	16	89347283	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	168630	89347283	1007470	994	50950										
ANKRD11	0	genome.wustl.edu	37	chr16	89348127	89348127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accggtgcctcagcttctccAtttgcttcatcctctccttg	6	16	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	89348127	89348127	A	G	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.4823	p.M1608T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	136	0	0	64	61	48.8	-	-	-	G	89348127	A	G	89348127	3	3	569	1	0	0	0	0	1	0	0	0	639	217	8	5	3188	5	ANKRD11	16	89348127	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	844	89348127	1006626	995	50951										
SPG7	0	genome.wustl.edu	37	chr16	89598370	89598371	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagggcgcactgctgctcggINScccccccggctgtgggaaga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	16	89598370	89598371	-	C	INS	SPG7	ENST00000268704	human	ensembl	69_37n	1	known	frame_shift_ins	c.1046_1047	p.G352fs	1.000:0.002	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912	146	0	0	96	35	26.72	-	-	-	C	89598371	-	C	89598370	7	5	569	1	0	1	1	0	0	0	0	0	15135	1203	42	0	1076	0	SPG7	16	89598370	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	250243	89598370	756383	996	50952										
PRPF8	0	genome.wustl.edu	37	chr17	1579900	1579900	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgtccacagtggcccctcGgcggatccgttctcggttgt	12	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	1579900	1579900	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	nonsense	c.2287	p.R763*	0.997	pfam_PROCN	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	139	0	0	110	55	33.33	-	-	-	A	1579900	G	A	1579900	4	1	569	1	0	0	0	0	0	1	0	0	12656	1124	39	1	4832	1	PRPF8	17	1579900	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09		1579900	79615310	997	50953										
WDR81	0	genome.wustl.edu	37	chr17	1636026	1636026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggtggtcttctctgatgggCagcagcggcccgtggacccc	15	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	1636026	1636026	C	G	SNP	WDR81	ENST00000409644	human	ensembl	69_37n	1	known	missense	c.4390	p.Q1464E	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	45	0	0	17	23	57.5	-	-	-	G	1636026	C	G	1636026	3	3	569	1	0	0	0	0	1	0	0	0	17427	711	25	4	4474	4	WDR81	17	1636026	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	56126	1636026	79559184	998	50954										
KIAA0664	0	genome.wustl.edu	37	chr17	2593958	2593958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaggtctcctggggcccccGctggcgcgggctcggtagcc	16	17	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	2593958	2593958	G	A	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.3860	p.A1287V	0.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	29	0	0	18	16	47.06	-	-	-	A	2593958	G	A	2593958	3	1	569	1	0	0	0	0	1	0	0	0	8241	1087	38	1	73	1	KIAA0664	17	2593958	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	957932	2593958	78601252	999	50955										
KIAA0664	0	genome.wustl.edu	37	chr17	2607685	2607685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagggctcgatcccaggggCgaggatcttcacagaaaagc	14	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	2607685	2607685	C	T	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.160	p.A54T	1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	65	0	0	46	33	40.74	-	-	-	T	2607685	C	T	2607685	3	4	569	1	0	0	0	0	1	0	0	0	8241	768	27	1	3869	1	KIAA0664	17	2607685	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	13727	2607685	78587525	1000	50956										
INCA1	0	genome.wustl.edu	37	chr17	4892806	4892806	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggggactcccccaaggccCtgctgctgcattccttccaa	10	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	4892806	4892806	C	T	SNP	INCA1	ENST00000396829	human	ensembl	69_37n	-1	known	silent	c.312	p.Q104	0.716	NULL	NULL	-	no_errors	INCA1	HGNC	ENSG00000196388	164	0	0	112	58	34.12	-	-	-	T	4892806	C	T	4892806	2	4	569	1	0	0	0	0	0	0	0	1	7786	680	24	4		4	INCA1	17	4892806	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2285121	4892806	76302404	1001	50957										
TNK1	0	genome.wustl.edu	37	chr17	7290395	7290396	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagtgacgctggcagatgcINSggggggcttgccagccaccc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7290395	7290396	-	G	INS	TNK1	ENST00000576812	human	ensembl	69_37n	1	known	frame_shift_ins	c.1334_1335	p.L449fs	0.000:0.004	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292	115	0	0	101	40	28.37	-	-	-	G	7290396	-	G	7290395	7	5	569	1	0	1	1	0	0	0	0	0	16412	768	27	0	1349	0	TNK1	17	7290395	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	2397589	7290395	73904815	1002	50958										
DNAH2	0	genome.wustl.edu	37	chr17	7681676	7681676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgcaggcacaggcaagacCgagaccgtcaaggacctggg	14	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7681676	7681676	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.5430	p.T1810	0.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	59	0	0	55	21	27.63	-	-	-	T	7681676	C	T	7681676	2	4	569	1	0	0	0	0	0	0	0	1	4638	639	23	1		1	DNAH2	17	7681676	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	391281	7681676	73513534	1003	50959										
DNAH2	0	genome.wustl.edu	37	chr17	7705284	7705284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgttggaactgcggagacAcaactatgtcacacccacca	9	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7705284	7705284	A	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.8921	p.H2974R	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	332	0	0	242	104	30.06	-	-	-	G	7705284	A	G	7705284	3	3	569	1	0	0	0	0	1	0	0	0	4638	159	6	5	9147	5	DNAH2	17	7705284	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	23608	7705284	73489926	1004	50960										
CHD3	0	genome.wustl.edu	37	chr17	7793748	7793748	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagagcaagactccatctccAaaaaaaaaaaggagataaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7793748	7793748	A	-	DEL	CHD3	ENST00000574022	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.454	-	-	-	no_errors	CHD3	HGNC	ENSG00000170004	18	0	0	3	14	63.64	-	-	-	-	7793748	A	-	7793748	6	5	569	0	1	1	0	1	0	0	0	0	3355	145	5	0		0	CHD3	17	7793748	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	88464	7793748	73401462	1005	50961										
CNTROB	0	genome.wustl.edu	37	chr17	7842981	7842981	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgccctagaagaagaacggCagacctgggcccagcaagag	13	12	0	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7842981	7842981	C	T	SNP	CNTROB	ENST00000380262	human	ensembl	69_37n	1	known	nonsense	c.1078	p.Q360*	0.984	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037	71	0	0	74	44	37.29	-	-	-	T	7842981	C	T	7842981	4	4	569	1	0	0	0	0	0	1	0	0	3681	711	25	4	1108	4	CNTROB	17	7842981	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	49233	7842981	73352229	1006	50962										
GUCY2D	0	genome.wustl.edu	37	chr17	7915514	7915514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctacctggggcttttcctggCtcggggagcagaaggccctg	15	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7915514	7915514	C	T	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	missense	c.1802	p.A601V	0.914	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	83	0	0	56	30	34.88	-	-	-	T	7915514	C	T	7915514	3	4	569	1	0	0	0	0	1	0	0	0	6948	797	28	4	1832	4	GUCY2D	17	7915514	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	72533	7915514	73279696	1007	50963										
ALOX15B	0	genome.wustl.edu	37	chr17	7942706	7942706	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tacttaacctcccctcaggaGgaggacttccaggtgacgct	10	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	7942706	7942706	G	T	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	missense	c.150	p.E50D	1.000	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	58	0	0	44	22	33.33	-	-	-	T	7942706	G	T	7942706	3	4	569	1	0	0	0	0	1	0	0	0	539	991	35	4	156	4	ALOX15B	17	7942706	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	27192	7942706	73252504	1008	50964										
PIK3R6	0	genome.wustl.edu	37	chr17	8736214	8736214	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagtcgcttaccaccgcagCgccccgccgcgggacccagc	11	21	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	8736214	8736214	C	T	SNP	PIK3R6	ENST00000311434	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PIK3R6	HGNC	ENSG00000174083	15	0	0	8	5	38.46	-	-	-	T	8736214	C	T	8736214	1	4	569	0	1	0	0	0	0	0	0	0	11997	768	27	1		1	PIK3R6	17	8736214	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	793508	8736214	72458996	1009	50965										
USP43	0	genome.wustl.edu	37	chr17	9604499	9604499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtgtgtggcagcagcagcaGgcgcatcagcagcacagctg	15	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	9604499	9604499	G	C	SNP	USP43	ENST00000285199	human	ensembl	69_37n	1	known	missense	c.1599	p.Q533H	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	39	0	0	23	26	53.06	-	-	-	C	9604499	G	C	9604499	3	2	569	1	0	0	0	0	1	0	0	0	17171	991	35	4	1641	4	USP43	17	9604499	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	868285	9604499	71590711	1010	50966										
MYH1	0	genome.wustl.edu	37	chr17	10397961	10397961	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaacattgcgcttctgttcActttcaacttcaccttcaag	4	13	6	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	10397961	10397961	A	G	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.5496	p.S1832	0.373	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	608	1	0.16	449	180	28.57	-	-	-	G	10397961	A	G	10397961	2	3	569	1	0	0	0	0	0	0	0	1	10101	156	6	5		5	MYH1	17	10397961	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	793462	10397961	70797249	1011	50967										
MYH2	0	genome.wustl.edu	37	chr17	10442670	10442670	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagcacctactgcgttggacAccttaaaagacaaaattata	7	9	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	10442670	10442670	A	G	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.1268	p.V423A	0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	350	1	0.28	227	144	38.71	-	-	-	G	10442670	A	G	10442670	3	3	569	1	0	0	0	0	1	0	0	0	10107	173	6	5	4665	5	MYH2	17	10442670	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	44709	10442670	70752540	1012	50968										
MYH3	0	genome.wustl.edu	37	chr17	10542777	10542777	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctaacccagagagttcctcAgtaaggtttttaacctaaga	7	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	10542777	10542777	A	G	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.2940	p.T980	0.444	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	297	0	0	179	104	36.75	-	-	-	G	10542777	A	G	10542777	2	3	569	1	0	0	0	0	0	0	0	1	10108	175	7	5		5	MYH3	17	10542777	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	100107	10542777	70652433	1013	50969										
MYH3	0	genome.wustl.edu	37	chr17	10549319	10549319	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggctaatgaacgggtagTcgtaagggttggtcgtaata	14	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	10549319	10549319	T	C	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	missense	c.929	p.D310G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	345	0	0	238	117	32.77	-	-	-	C	10549319	T	C	10549319	3	2	569	1	0	0	0	0	1	0	0	0	10108	1667	58	5	5017	5	MYH3	17	10549319	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	6542	10549319	70645891	1014	50970										
PMP22	0	genome.wustl.edu	37	chr17	15162486	15162486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttctgccagagatcagttgCgtgtccattgcccacgatcc	10	13	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	15162486	15162486	C	T	SNP	PMP22	ENST00000312280	human	ensembl	69_37n	-1	known	missense	c.103	p.A35T	0.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22,prints_PMP22_EMP_MP20	-	no_errors	PMP22	HGNC	ENSG00000109099	466	2	0.43	328	191	36.8	-	-	-	T	15162486	C	T	15162486	3	4	569	1	0	0	0	0	1	0	0	0	12213	768	27	1	391	1	PMP22	17	15162486	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4613167	15162486	66032724	1015	50971										
LRRC48	0	genome.wustl.edu	37	chr17	17900865	17900865	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaacagagcttgacaccttcAgtgaatgtgtccgtgaggcc	11	10	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	17900865	17900865	A	G	SNP	LRRC48	ENST00000313838	human	ensembl	69_37n	1	known	missense	c.916	p.S306G	0.964	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	226	0	0	160	85	34.69	-	-	-	G	17900865	A	G	17900865	3	3	569	1	0	0	0	0	1	0	0	0	9071	188	7	5	942	5	LRRC48	17	17900865	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2738379	17900865	63294345	1016	50972										
TRIM16L	0	genome.wustl.edu	37	chr17	18635399	18635399	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgccattgttcagcgcaaaTattggacttccaaacctgag	8	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	18635399	18635399	T	C	SNP	TRIM16L	ENST00000395902	human	ensembl	69_37n	1	known	missense	c.577	p.Y193H	0.000	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIM16L	HGNC	ENSG00000108448	456	0	0	342	178	34.23	-	-	-	C	18635399	T	C	18635399	3	2	569	1	0	0	0	0	1	0	0	0	16588	1406	49	5	425	5	TRIM16L	17	18635399	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	734534	18635399	62559811	1017	50973										
B9D1	0	genome.wustl.edu	37	chr17	19246897	19246897	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acaacagtgcctgacccaagCccctcactgggaggtaaagg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	19246897	19246897	C	-	DEL	B9D1	ENST00000477478	human	ensembl	69_37n	-1	putative	frame_shift_del	c.605	p.G202fs	0.000	NULL	NULL	-	no_errors	B9D1	HGNC	ENSG00000108641	31	0	0	11	8	42.11	-	-	-	-	19246897	C	-	19246897	7	5	569	1	0	1	0	1	0	0	0	0	1281	754	26	0		0	B9D1	17	19246897	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	611498	19246897	61948313	1018	50974										
ALDH3A1	0	genome.wustl.edu	37	chr17	19641648	19641649	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctcaccttggccgggctcINSggggggtatctgaccttcag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	19641648	19641649	-	G	INS	ALDH3A1	ENST00000225740	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1335_1334	p.S446fs	0.002:0.889	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602	81	0	0	41	18	30.51	-	-	-	G	19641649	-	G	19641648	7	5	569	1	0	1	1	0	0	0	0	0	497	871	31	0	34	0	ALDH3A1	17	19641648	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	394751	19641648	61553562	1019	50975										
SARM1	0	genome.wustl.edu	37	chr17	26708464	26708464	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caactgcgcgctgcacggggGccaggcggtgcagcgacgca	17	14	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	26708464	26708464	G	C	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	1	novel	missense	c.611	p.G204A	1.000	superfamily_ARM-type_fold	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	21	0	0	17	6	26.09	-	-	-	C	26708464	G	C	26708464	3	2	569	1	0	0	0	0	1	0	0	0	13929	1203	42	4	717	4	SARM1	17	26708464	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	7066816	26708464	54486746	1020	50976										
SUPT6H	0	genome.wustl.edu	37	chr17	27018009	27018009	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgagagctatgaccaggcGatccgcaatgatgagacagg	15	8	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	27018009	27018009	G	A	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	silent	c.3561	p.A1187	0.374	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	207	1	0.48	234	82	25.87	-	-	-	A	27018009	G	A	27018009	2	1	569	1	0	0	0	0	0	0	0	1	15491	1045	37	1		1	SUPT6H	17	27018009	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	309545	27018009	54177201	1021	50977										
DHRS13	0	genome.wustl.edu	37	chr17	27228067	27228067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctggttggcgagctcccggGcaaacagtacattagccagc	13	12	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	27228067	27228067	G	A	SNP	DHRS13	ENST00000378895	human	ensembl	69_37n	-1	known	missense	c.623	p.A208V	0.990	pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	45	0	0	75	24	24.24	-	-	-	A	27228067	G	A	27228067	3	1	569	1	0	0	0	0	1	0	0	0	4525	1203	42	4	518	4	DHRS13	17	27228067	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	210058	27228067	53967143	1022	50978										
MYO18A	0	genome.wustl.edu	37	chr17	27414017	27414017	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctcgcccatctcctccttGgtgtcccggagctgcctctg	10	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	27414017	27414017	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	silent	c.5649	p.T1883	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	100	0	0	152	25	14.12	-	-	-	A	27414017	G	A	27414017	2	1	569	1	0	0	0	0	0	0	0	1	10137	1335	47	4		4	MYO18A	17	27414017	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	185950	27414017	53781193	1023	50979										
MYO18A	0	genome.wustl.edu	37	chr17	27493811	27493811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggattcacgcttggaggagcGgttcaggttgaagaagccac	15	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	27493811	27493811	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.148	p.R50C	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	211	0	0	376	88	18.88	-	-	-	A	27493811	G	A	27493811	3	1	569	1	0	0	0	0	1	0	0	0	10137	1116	39	1	6180	1	MYO18A	17	27493811	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	79794	27493811	53701399	1024	50980										
CRYBA1	0	genome.wustl.edu	37	chr17	27577217	27577217	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagataaccatctatgatcaGgagaactttcagggcaagag	10	8	3	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	27577217	27577217	G	C	SNP	CRYBA1	ENST00000225387	human	ensembl	69_37n	1	known	missense	c.114	p.Q38H	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA1	HGNC	ENSG00000108255	316	0	0	610	115	15.86	-	-	-	C	27577217	G	C	27577217	3	2	569	1	0	0	0	0	1	0	0	0	3937	991	35	4	124	4	CRYBA1	17	27577217	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	83406	27577217	53617993	1025	50981										
NF1	0	genome.wustl.edu	37	chr17	29592336	29592336	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccaaagctgggaatcctaTtttttattatgttgcacgga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	29592336	29592336	T	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_del	c.4814	p.Y1607fs	1.000	superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	134	0	0	48	56	53.85	-	-	-	-	29592336	T	-	29592336	7	5	569	1	0	1	0	1	0	0	0	0	10428	1493	52	0	5017	0	NF1	17	29592336	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	2015119	29592336	51602874	1026	50982										
RHOT1	0	genome.wustl.edu	37	chr17	30498102	30498102	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgattatgtctctggtcagTgaagaatttccagaagaggt	11	6	2	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	30498102	30498102	T	C	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	silent	c.78	p.S26	1.000	pfam_MIRO-like,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_Miro,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	168	0	0	122	19	13.29	-	-	-	C	30498102	T	C	30498102	2	2	569	1	0	0	0	0	0	0	0	1	13427	1693	59	5		5	RHOT1	17	30498102	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	905766	30498102	50697108	1027	50983										
SLFN13	0	genome.wustl.edu	37	chr17	33767699	33767699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagctgggtcagctgtccttGgatggatcccaaacactatg	11	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	33767699	33767699	G	A	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	missense	c.2609	p.P870L	0.014	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	378	0	0	93	141	60.26	-	-	-	A	33767699	G	A	33767699	3	1	569	1	0	0	0	0	1	0	0	0	14825	1348	47	4	88	4	SLFN13	17	33767699	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3269597	33767699	47427511	1028	50984										
KRT25	0	genome.wustl.edu	37	chr17	38911447	38911447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtaccaaagctggttcccCcaccatagagtctgagtgat	9	12	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	38911447	38911447	C	T	SNP	KRT25	ENST00000312150	human	ensembl	69_37n	-1	known	missense	c.77	p.G26E	0.003	NULL	pfam_F,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897	46	0	0	15	16	50	-	-	-	T	38911447	C	T	38911447	3	4	569	1	0	0	0	0	1	0	0	0	8515	623	22	4	1307	4	KRT25	17	38911447	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5143748	38911447	42283763	1029	50985										
KRT37	0	genome.wustl.edu	37	chr17	39580442	39580442	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtagttggccaggcggtcatTcaggaacttcatggtctcct	12	10	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	39580442	39580442	T	C	SNP	KRT37	ENST00000225550	human	ensembl	69_37n	-1	known	missense	c.334	p.N112D	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT37	HGNC	ENSG00000108417	257	0	0	59	94	61.44	-	-	-	C	39580442	T	C	39580442	3	2	569	1	0	0	0	0	1	0	0	0	8527	1783	62	5	1043	5	KRT37	17	39580442	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	668995	39580442	41614768	1030	50986										
TTC25	0	genome.wustl.edu	37	chr17	40101480	40101480	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagcaagccattgacacgtgAgtgaccaagaattgcctctt	9	11	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	40101480	40101480	A	T	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	103	0	0	39	39	50	-	-	-	T	40101480	A	T	40101480	1	4	569	0	1	0	0	0	0	0	0	0	16790	318	11	5		5	TTC25	17	40101480	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	521038	40101480	41093730	1031	50987										
DHX58	0	genome.wustl.edu	37	chr17	40262750	40262750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccaggctgacctgcaggacGtggttgatggccccatcgag	15	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	40262750	40262750	G	A	SNP	DHX58	ENST00000251642	human	ensembl	69_37n	-1	known	silent	c.552	p.H184	1.000	smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771	124	0	0	32	34	51.52	-	-	-	A	40262750	G	A	40262750	2	1	569	1	0	0	0	0	0	0	0	1	4550	1136	40	1		1	DHX58	17	40262750	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	161270	40262750	40932460	1032	50988										
KAT2A	0	genome.wustl.edu	37	chr17	40270000	40270000	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccatgctggggctgaagaTgggggtgctgggaacaaccg	17	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	40270000	40270000	T	C	SNP	KAT2A	ENST00000225916	human	ensembl	69_37n	-1	known	missense	c.1216	p.I406V	0.985	pirsf_Hist_acetylase_PCAF	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom	-	no_errors	KAT2A	HGNC	ENSG00000108773	72	0	0	24	39	61.9	-	-	-	C	40270000	T	C	40270000	3	2	569	1	0	0	0	0	1	0	0	0	8035	1464	51	5	1341	5	KAT2A	17	40270000	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7250	40270000	40925210	1033	50989										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40666400	40666400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgttcttcttcttcactgCctttgccaccctgaccgtgg	8	15	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	40666400	40666400	C	T	SNP	ATP6V0A1	ENST00000264649	human	ensembl	69_37n	1	known	missense	c.2345	p.A782V	0.999	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	346	0	0	74	120	61.54	-	-	-	T	40666400	C	T	40666400	3	4	569	1	0	0	0	0	1	0	0	0	1172	739	26	4	2441	4	ATP6V0A1	17	40666400	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	396400	40666400	40528810	1034	50990										
UBTF	0	genome.wustl.edu	37	chr17	42285118	42285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggggtttgggcctcgcagCttggtcatgctcttacgttt	13	9	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	42285118	42285118	C	A	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	missense	c.1974	p.K658N	1.000	superfamily_HMG_superfamily,superfamily_ARM-type_fold	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	181	0	0	51	60	53.57	-	-	-	A	42285118	C	A	42285118	3	1	569	1	0	0	0	0	1	0	0	0	17006	796	28	4	332	4	UBTF	17	42285118	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1618718	42285118	38910092	1035	50991										
C17orf104	0	genome.wustl.edu	37	chr17	42744742	42744742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaaacaaaaaataacactcCtattccttatcgaaatcaag	2	10	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	42744742	42744742	C	T	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.1463	p.P488L	0.994	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	138	0	0	35	53	60.23	-	-	-	T	42744742	C	T	42744742	3	4	569	1	0	0	0	0	1	0	0	0	1864	681	24	4	1481	4	C17orf104	17	42744742	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	459624	42744742	38450468	1036	50992										
NMT1	0	genome.wustl.edu	37	chr17	43175768	43175768	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agagagaagaagatggtagaGatcaacttcctgtgtgtcca	12	6	1	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	43175768	43175768	G	T	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	1	known	missense	c.732	p.E244D	1.000	pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	198	0	0	43	59	57.84	-	-	-	T	43175768	G	T	43175768	3	4	569	1	0	0	0	0	1	0	0	0	10575	933	33	2	758	2	NMT1	17	43175768	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	431026	43175768	38019442	1037	50993										
SCRN2	0	genome.wustl.edu	37	chr17	45917585	45917585	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtccatgcccagcagggcttCcccctccccaactggctcct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	45917585	45917585	C	-	DEL	SCRN2	ENST00000290216	human	ensembl	69_37n	-1	known	frame_shift_del	c.328	p.E110fs	1.000	pfam_Peptidase_C69,pfam_Pept_C45_AAT	pfam_Peptidase_C69,pfam_Pept_C45_AAT	-	no_errors	SCRN2	HGNC	ENSG00000141295	134	0	0	82	55	39.86	-	-	-	-	45917585	C	-	45917585	7	5	569	1	0	1	0	1	0	0	0	0	14027	864	30	0	991	0	SCRN2	17	45917585	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	2741817	45917585	35277625	1038	50994										
VEZF1	0	genome.wustl.edu	37	chr17	56056610	56056610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgttgttgttgttgttgctgCtgctgctgctgctgctgctg	14	8	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	56056610	56056610	C	T	SNP	VEZF1	ENST00000258963	human	ensembl	69_37n	-1	novel	missense	c.497	p.S166N	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VEZF1	HGNC	ENSG00000136451	226	1	0.44	403	96	19.16	-	-	-	T	56056610	C	T	56056610	3	4	569	1	0	0	0	0	1	0	0	0	17252	796	28	4	532	4	VEZF1	17	56056610	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	10139025	56056610	25138600	1039	50995										
EPX	0	genome.wustl.edu	37	chr17	56276525	56276525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggaatggagacaaactgtaCaatgaggctcggaagatcat	12	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	56276525	56276525	C	T	SNP	EPX	ENST00000225371	human	ensembl	69_37n	1	known	silent	c.1245	p.Y415	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	134	0	0	233	44	15.88	-	-	-	T	56276525	C	T	56276525	2	4	569	1	0	0	0	0	0	0	0	1	5237	489	17	4		4	EPX	17	56276525	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	219915	56276525	24918685	1040	50996										
MKS1	0	genome.wustl.edu	37	chr17	56284466	56284466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgaaggatcctggtatccGtacataggagaggtcctcca	11	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	56284466	56284466	G	A	SNP	MKS1	ENST00000393119	human	ensembl	69_37n	-1	known	missense	c.1387	p.R463W	1.000	pfam_B9_dom	pfam_B9_dom	-	no_errors	MKS1	HGNC	ENSG00000011143	119	0	0	232	36	13.38	-	-	-	A	56284466	G	A	56284466	3	1	569	1	0	0	0	0	1	0	0	0	9680	1144	40	1	308	1	MKS1	17	56284466	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	7941	56284466	24910744	1041	50997										
RNF43	0	genome.wustl.edu	37	chr17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggggtgggctcggagggaCccccccgccttttcctctgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	69_37n	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	149	0	0	255	29	10.14	-	-	-	-	56435161	C	-	56435161	7	5	569	1	0	1	0	1	0	0	0	0	13581	507	18	0	383	0	RNF43	17	56435161	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	150695	56435161	24760049	1042	50998										
MTMR4	0	genome.wustl.edu	37	chr17	56572389	56572389	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacgcacctgtcgacgtagCtgctccacctcttgtttgta	8	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	56572389	56572389	C	T	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	silent	c.3114	p.Q1038	0.998	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	361	0	0	703	144	16.96	-	-	-	T	56572389	C	T	56572389	2	4	569	1	0	0	0	0	0	0	0	1	10018	796	28	4		4	MTMR4	17	56572389	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	137228	56572389	24622821	1043	50999										
GDPD1	0	genome.wustl.edu	37	chr17	57322807	57322807	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cggaactgatatgctagaatTggactgccatatcacaaaag	9	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	57322807	57322807	T	C	SNP	GDPD1	ENST00000284116	human	ensembl	69_37n	1	known	missense	c.218	p.L73S	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	259	0	0	513	96	15.76	-	-	-	C	57322807	T	C	57322807	3	2	569	1	0	0	0	0	1	0	0	0	6375	1821	63	5	228	5	GDPD1	17	57322807	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	750418	57322807	23872403	1044	51000										
CLTC	0	genome.wustl.edu	37	chr17	57760139	57760139	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctaggaaagctaacagtacTcgaacatggaaagaggtaat	11	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	57760139	57760139	T	C	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	silent	c.3750	p.T1250	0.620	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	289	1	0.34	623	111	15.12	-	-	-	C	57760139	T	C	57760139	2	2	569	1	0	0	0	0	0	0	0	1	3596	1538	54	5		5	CLTC	17	57760139	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	437332	57760139	23435071	1045	51001										
TUBD1	0	genome.wustl.edu	37	chr17	57958422	57958422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acatttctccacttccttccGgattatgttcattatagatt	4	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	57958422	57958422	G	A	SNP	TUBD1	ENST00000325752	human	ensembl	69_37n	-1	known	missense	c.370	p.R124W	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423	228	1	0.43	441	113	20.32	-	-	-	A	57958422	G	A	57958422	3	1	569	1	0	0	0	0	1	0	0	0	16859	1115	39	1	1015	1	TUBD1	17	57958422	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	198283	57958422	23236788	1046	51002										
RNFT1	0	genome.wustl.edu	37	chr17	58040604	58040604	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgcatggcccttaaatacTttttctctgacccagatgtc	6	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	58040604	58040604	T	C	SNP	RNFT1	ENST00000305783	human	ensembl	69_37n	-1	known	missense	c.98	p.K33R	0.152	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050	68	0	0	122	38	23.75	-	-	-	C	58040604	T	C	58040604	3	2	569	1	0	0	0	0	1	0	0	0	13587	1609	56	5	1241	5	RNFT1	17	58040604	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	82182	58040604	23154606	1047	51003										
USP32	0	genome.wustl.edu	37	chr17	58258723	58258723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ataaataggcttaatacgagTatcttctctttggtcatcag	7	7	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	58258723	58258723	T	C	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4510	p.T1504A	0.010	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	366	0	0	649	126	16.22	-	-	-	C	58258723	T	C	58258723	3	2	569	1	0	0	0	0	1	0	0	0	17160	1638	57	5	316	5	USP32	17	58258723	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	218119	58258723	22936487	1048	51004										
USP32	0	genome.wustl.edu	37	chr17	58258980	58258980	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttactacttgacagtttaTttttgctgccaatctggggc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	58258980	58258980	T	-	DEL	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	frame_shift_del	c.4253	p.N1418fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	148	0	0	263	58	17.9	-	-	-	-	58258980	T	-	58258980	7	5	569	1	0	1	0	1	0	0	0	0	17160	1493	52	0	573	0	USP32	17	58258980	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	257	58258980	22936230	1049	51005										
USP32	0	genome.wustl.edu	37	chr17	58286768	58286768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtctggtcgcccatcactgTccttcagttccacatatggc	8	14	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	58286768	58286768	T	C	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.2561	p.D854G	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	209	1	0.48	455	112	19.72	-	-	-	C	58286768	T	C	58286768	3	2	569	1	0	0	0	0	1	0	0	0	17160	1667	58	5	2305	5	USP32	17	58286768	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	27788	58286768	22908442	1050	51006										
INTS2	0	genome.wustl.edu	37	chr17	59945278	59945278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggatcagcaaagacataaTatcctcatacaatggaggaa	8	7	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	59945278	59945278	T	C	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	missense	c.3361	p.I1121V	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	207	0	0	374	109	22.57	-	-	-	C	59945278	T	C	59945278	3	2	569	1	0	0	0	0	1	0	0	0	7832	1406	49	5	261	5	INTS2	17	59945278	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1658510	59945278	21249932	1051	51007										
INTS2	0	genome.wustl.edu	37	chr17	59947271	59947271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgaacatttcttaacaagcTatctggattgacaccatttg	6	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	59947271	59947271	T	C	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	missense	c.2881	p.S961G	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	133	0	0	307	59	16.12	-	-	-	C	59947271	T	C	59947271	3	2	569	1	0	0	0	0	1	0	0	0	7832	1522	53	5	753	5	INTS2	17	59947271	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1993	59947271	21247939	1052	51008										
MRC2	0	genome.wustl.edu	37	chr17	60768012	60768012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgcatccagcgggtggggCcgtcctgtctatcctggatg	14	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	60768012	60768012	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	missense	c.3902	p.A1301V	0.297	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	188	0	0	335	64	16	-	-	-	T	60768012	C	T	60768012	3	4	569	1	0	0	0	0	1	0	0	0	9830	739	26	4	4008	4	MRC2	17	60768012	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	820741	60768012	20427198	1053	51009										
MARCH10	0	genome.wustl.edu	37	chr17	60782905	60782905	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccccaaaacctactttcaTtttcctctgttctgggttgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	60782905	60782905	T	-	DEL	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	frame_shift_del	c.2366	p.N789fs	0.998	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	298	0	0	553	100	15.2	-	-	-	-	60782905	T	-	60782905	7	5	569	1	0	1	0	1	0	0	0	0	9370	1493	52	0	68	0	MARCH10	17	60782905	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	14893	60782905	20412305	1054	51010										
FTSJ3	0	genome.wustl.edu	37	chr17	61901579	61901579	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtcctcctcatcaccttcaTcttcctctccagagctgagg	6	16	5	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	61901579	61901579	T	G	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	missense	c.1019	p.D340A	0.998	pfam_rRNA_MeTfrase_Spb1_DUF3381	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	381	0	0	700	158	18.39	-	-	-	G	61901579	T	G	61901579	3	3	569	1	0	0	0	0	1	0	0	0	6138	1435	50	5	1564	5	FTSJ3	17	61901579	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1118674	61901579	19293631	1055	51011										
PSMC5	0	genome.wustl.edu	37	chr17	61908445	61908448	+	Frame_Shift_Del	DEL	ATCT	ATCT	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggcacgggaacatgctccAtctatcatcttcatggacga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	ATCT	ATCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	61908445	61908448	ATCT	-	DEL	PSMC5	ENST00000310144	human	ensembl	69_37n	1	known	frame_shift_del	c.729_732	p.I245fs	0.023:0.997:1.000:0.935	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC5	HGNC	ENSG00000087191	154	0	0	228	60	20.62	-	-	-	-	61908448	ATCT	-	61908445	7	5	569	1	0	1	0	1	0	0	0	0	12770	204	8	0	759	0	PSMC5	17	61908445	Frame_Shift_Del	DEL	ATCT	TCGA-BH-A18G-01A-11D-A12B-09	6866	61908445	19286765	1056	51012										
GH2	0	genome.wustl.edu	37	chr17	61957633	61957633	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actggagtagcaccttccacGaccaggagaggcactgggga	14	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	61957633	61957633	G	T	SNP	GH2	ENST00000456543	human	ensembl	69_37n	-1	known	nonsense	c.698	p.S233*	0.001	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	218	0	0	374	79	17.4	-	-	-	T	61957633	G	T	61957633	4	4	569	1	0	0	0	0	0	1	0	0	6420	1059	37	3	43	3	GH2	17	61957633	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	49188	61957633	19237577	1057	51013										
SCN4A	0	genome.wustl.edu	37	chr17	62019085	62019085	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgctgttgccgaaggtctcGaagttgaacatatcatcgat	10	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	62019085	62019085	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.4557	p.F1519	0.951	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	339	0	0	498	98	16.42	-	-	-	A	62019085	G	A	62019085	2	1	569	1	0	0	0	0	0	0	0	1	14008	1049	37	1		1	SCN4A	17	62019085	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	61452	62019085	19176125	1058	51014										
SCN4A	0	genome.wustl.edu	37	chr17	62020328	62020328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgatgttgtacaggatgtcCaccttgagctggctctggtt	12	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	62020328	62020328	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.4146	p.V1382	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	449	0	0	784	143	15.39	-	-	-	T	62020328	C	T	62020328	2	4	569	1	0	0	0	0	0	0	0	1	14008	581	21	4		4	SCN4A	17	62020328	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1243	62020328	19174882	1059	51015										
PRKCA	0	genome.wustl.edu	37	chr17	64641576	64641576	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aatggatcacactgagaagaGggggcggatttacctaaagg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	64641576	64641576	G	-	DEL	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	frame_shift_del	c.476	p.R161fs	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	375	0	0	845	131	13.39	-	-	-	-	64641576	G	-	64641576	7	5	569	1	0	1	0	1	0	0	0	0	12588	1000	35	0	494	0	PRKCA	17	64641576	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	2621248	64641576	16553634	1060	51016										
KPNA2	0	genome.wustl.edu	37	chr17	66040120	66040120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcaaacatcacagccggccGccaggaccagatacagcaag	10	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	66040120	66040120	G	A	SNP	KPNA2	ENST00000330459	human	ensembl	69_37n	1	known	missense	c.1097	p.R366H	0.998	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481	314	0	0	505	147	22.55	-	-	-	A	66040120	G	A	66040120	3	1	569	1	0	0	0	0	1	0	0	0	8483	1087	38	1	1123	1	KPNA2	17	66040120	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1398544	66040120	15155090	1061	51017										
ABCA9	0	genome.wustl.edu	37	chr17	67047217	67047217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cattttttgagacagttcttGcagagaagagcccatgtttg	10	7	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	67047217	67047217	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	silent	c.51	p.C17	0.522	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	358	1	0.28	652	146	18.3	-	-	-	A	67047217	G	A	67047217	2	1	569	1	0	0	0	0	0	0	0	1	39	1311	46	4		4	ABCA9	17	67047217	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1007097	67047217	14147993	1062	51018										
ABCA5	0	genome.wustl.edu	37	chr17	67309421	67309421	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttaaccaaaataaaaaaaatAgtggaaaaagaatttcctac	4	5	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	67309421	67309421	A	G	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.119	p.L40P	0.972	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	66	0	0	185	29	13.55	-	-	-	G	67309421	A	G	67309421	3	3	569	1	0	0	0	0	1	0	0	0	35	420	15	5	4957	5	ABCA5	17	67309421	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	262204	67309421	13885789	1063	51019										
KCNJ2	0	genome.wustl.edu	37	chr17	68171419	68171419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caccacgtgtgtggacattcGctggcggtggatgctggtta	15	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	68171419	68171419	G	A	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.239	p.R80H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	141	0	0	319	61	16.05	-	-	-	A	68171419	G	A	68171419	3	1	569	1	0	0	0	0	1	0	0	0	8105	1087	38	1	241	1	KCNJ2	17	68171419	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	861998	68171419	13023791	1064	51020										
COG1	0	genome.wustl.edu	37	chr17	71196087	71196087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catccatcgtcgagttccagCcaacactccgaacccttgca	6	17	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	71196087	71196087	C	T	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.997	p.P333S	1.000	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	274	0	0	508	97	16.01	-	-	-	T	71196087	C	T	71196087	3	4	569	1	0	0	0	0	1	0	0	0	3687	739	26	4	1015	4	COG1	17	71196087	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3024668	71196087	9999123	1065	51021										
COG1	0	genome.wustl.edu	37	chr17	71197684	71197684	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaggagatgctgcggactcAgtccgtggcatgcatcaagc	14	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	71197684	71197684	A	G	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.1718	p.Q573R	1.000	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	72	0	0	162	38	18.91	-	-	-	G	71197684	A	G	71197684	3	3	569	1	0	0	0	0	1	0	0	0	3687	188	7	5	1744	5	COG1	17	71197684	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1597	71197684	9997526	1066	51022										
SDK2	0	genome.wustl.edu	37	chr17	71397224	71397224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccctttgaggtcatggcgGccacctcgatggtgtaggtg	16	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	71397224	71397224	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.2906	p.A969V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	166	0	0	265	63	19.15	-	-	-	A	71397224	G	A	71397224	3	1	569	1	0	0	0	0	1	0	0	0	14057	1203	42	4	3712	4	SDK2	17	71397224	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	199540	71397224	9797986	1067	51023										
MIF4GD	0	genome.wustl.edu	37	chr17	73262964	73262964	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggaagccatcccggatcaGcacaaagagctcatccatgc	9	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	73262964	73262964	G	A	SNP	MIF4GD	ENST00000577542	human	ensembl	69_37n	-1	known	silent	c.649	p.L217	0.996	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	-	no_errors	MIF4GD	HGNC	ENSG00000125457	105	1	0.93	222	41	15.53	-	-	-	A	73262964	G	A	73262964	2	1	569	1	0	0	0	0	0	0	0	1	9655	962	34	4		4	MIF4GD	17	73262964	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1865740	73262964	7932246	1068	51024										
CASKIN2	0	genome.wustl.edu	37	chr17	73498155	73498156	+	Frame_Shift_Del	DEL	CT	CT	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcagtgcggtctgcagtggCtctctctcccggcacttggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	73498155	73498156	CT	-	DEL	CASKIN2	ENST00000321617	human	ensembl	69_37n	-1	known	frame_shift_del	c.3000_2999	p.E1000fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain	-	no_errors	CASKIN2	HGNC	ENSG00000177303	83	0	0	141	21	12.88	-	-	-	-	73498156	CT	-	73498155	7	5	569	1	0	1	0	1	0	0	0	0	2692	796	28	0	620	0	CASKIN2	17	73498155	Frame_Shift_Del	DEL	CT	TCGA-BH-A18G-01A-11D-A12B-09	235191	73498155	7697055	1069	51025										
ITGB4	0	genome.wustl.edu	37	chr17	73725372	73725373	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagccctggcccaacagtgaINScccccccttctccttcaaga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	73725372	73725373	-	C	INS	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	frame_shift_ins	c.593_594	p.F201fs	1.000:0.996	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	191	0	0	377	73	16.22	-	-	-	C	73725373	-	C	73725372	7	5	569	1	0	1	1	0	0	0	0	0	7951	275	10	0	615	0	ITGB4	17	73725372	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	227217	73725372	7469838	1070	51026										
H3F3B	0	genome.wustl.edu	37	chr17	73774681	73774682	+	Frame_Shift_Del	DEL	CT	CT	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaaactgccttcacttaagCtctctctccccgtatccggc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	73774681	73774682	CT	-	DEL	H3F3B	ENST00000254810	human	ensembl	69_37n	-1	known	frame_shift_del	c.406_405	p.R135fs	1.000:1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3B	HGNC	ENSG00000132475	291	0	0	543	96	14.98	-	-	-	-	73774682	CT	-	73774681	7	5	569	1	0	1	0	1	0	0	0	0	6985	797	28	0	8	0	H3F3B	17	73774681	Frame_Shift_Del	DEL	CT	TCGA-BH-A18G-01A-11D-A12B-09	49309	73774681	7420529	1071	51027										
UNK	0	genome.wustl.edu	37	chr17	73814802	73814802	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacctccagcctggcagctaCcccccctagcccagtgggca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	73814802	73814802	C	-	DEL	UNK	ENST00000293218	human	ensembl	69_37n	1	known	frame_shift_del	c.1679	p.P562fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478	205	0	0	337	63	15.52	-	-	-	-	73814802	C	-	73814802	7	5	569	1	0	1	0	1	0	0	0	0	17097	507	18	0	1725	0	UNK	17	73814802	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	40121	73814802	7380408	1072	51028										
EVPL	0	genome.wustl.edu	37	chr17	74019420	74019421	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgaccctgggtcccacgtcINSggggggcagcaccatcttct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74019420	74019421	-	G	INS	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	frame_shift_ins	c.433_432	p.D144fs	0.023:0.005	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	194	0	0	357	55	13.35	-	-	-	G	74019421	-	G	74019420	7	5	569	1	0	1	1	0	0	0	0	0	5329	884	31	0	5744	0	EVPL	17	74019420	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	204618	74019420	7175790	1073	51029										
EVPL	0	genome.wustl.edu	37	chr17	74019442	74019442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggggcagcaccatcttctcGtacagggcacggtactccgc	13	14	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74019442	74019442	G	A	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	silent	c.411	p.Y137	0.322	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	198	0	0	333	85	20.19	-	-	-	A	74019442	G	A	74019442	2	1	569	1	0	0	0	0	0	0	0	1	5329	1140	40	1		1	EVPL	17	74019442	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	22	74019442	7175768	1074	51030										
UBE2O	0	genome.wustl.edu	37	chr17	74396571	74396571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtggggggctgacgctgtCcgtgccccctggacagaaac	17	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74396571	74396571	C	T	SNP	UBE2O	ENST00000319380	human	ensembl	69_37n	-1	known	missense	c.955	p.D319N	0.999	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	116	0	0	210	39	15.66	-	-	-	T	74396571	C	T	74396571	3	4	569	1	0	0	0	0	1	0	0	0	16965	855	30	2	2971	2	UBE2O	17	74396571	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	377129	74396571	6798639	1075	51031										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623564	74623564	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggcggtcccactcactctgGttgaagtgtctggagtccag	13	11	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74623564	74623564	G	A	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	silent	c.933	p.N311	0.936	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	199	0	0	380	62	14	-	-	-	A	74623564	G	A	74623564	2	1	569	1	0	0	0	0	0	0	0	1	15314	1252	44	4		4	ST6GALNAC1	17	74623564	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	226993	74623564	6571646	1076	51032										
JMJD6	0	genome.wustl.edu	37	chr17	74719905	74719905	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	taagatttccaggggtttgaAttcaggtggccaggttggaa	14	5	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74719905	74719905	A	T	SNP	JMJD6	ENST00000445478	human	ensembl	69_37n	-1	known	missense	c.754	p.F252I	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD6	HGNC	ENSG00000070495	369	0	0	673	161	19.3	-	-	-	T	74719905	A	T	74719905	3	4	569	1	0	0	0	0	1	0	0	0	8007	101	4	5	514	5	JMJD6	17	74719905	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	96341	74719905	6475305	1077	51033										
MGAT5B	0	genome.wustl.edu	37	chr17	74943951	74943951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	accctgccctaccagaggccCacgccccgcagagccccttt	8	21	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	74943951	74943951	C	T	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.1990	p.H664Y	0.519	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	97	0	0	173	34	16.43	-	-	-	T	74943951	C	T	74943951	3	4	569	1	0	0	0	0	1	0	0	0	9620	594	21	4	2120	4	MGAT5B	17	74943951	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	224046	74943951	6251259	1078	51034										
SEC14L1	0	genome.wustl.edu	37	chr17	75190772	75190772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttaaagggaaaggaaatcaTcgaatactaccttcgccaat	7	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	75190772	75190772	T	C	SNP	SEC14L1	ENST00000392476	human	ensembl	69_37n	1	known	missense	c.488	p.I163T	0.997	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657	149	0	0	260	66	20.25	-	-	-	C	75190772	T	C	75190772	3	2	569	1	0	0	0	0	1	0	0	0	14069	1435	50	5	506	5	SEC14L1	17	75190772	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	246821	75190772	6004438	1079	51035										
TNRC6C	0	genome.wustl.edu	37	chr17	76047478	76047478	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacacagggtcgagacgccgCccccgcaccaggccggtact							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76047478	76047478	C	-	DEL	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	frame_shift_del	c.2335	p.P780fs	0.253	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	57	0	0	106	22	16.92	-	-	-	-	76047478	C	-	76047478	7	5	569	1	0	1	0	1	0	0	0	0	16437	739	26	0	2337	0	TNRC6C	17	76047478	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	856706	76047478	5147732	1080	51036										
TMC6	0	genome.wustl.edu	37	chr17	76128384	76128384	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcccgcccttggactctcaGcgcggccccagccccggccc	12	22	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76128384	76128384	G	T	SNP	TMC6	ENST00000587480	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TMC6	HGNC	ENSG00000141524	22	0	0	47	11	18.97	-	-	-	T	76128384	G	T	76128384	1	4	569	0	1	0	0	0	0	0	0	0	16084	986	34	4		4	TMC6	17	76128384	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	80906	76128384	5066826	1081	51037										
TMC8	0	genome.wustl.edu	37	chr17	76128547	76128547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttcgtgctgctgcccctgGtctggctccgcccccctgac	11	19	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76128547	76128547	G	T	SNP	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	missense	c.406	p.V136F	0.826	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	53	0	0	138	34	19.54	-	-	-	T	76128547	G	T	76128547	3	4	569	1	0	0	0	0	1	0	0	0	16086	1261	44	4	416	4	TMC8	17	76128547	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	163	76128547	5066663	1082	51038										
PGS1	0	genome.wustl.edu	37	chr17	76388701	76388701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttggagtctccagttctcaCgttagggtgctttcttcccc	9	12	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76388701	76388701	C	T	SNP	PGS1	ENST00000588169	human	ensembl	69_37n	1	known	missense	c.250	p.R84C	0.067	NULL	NULL	-	no_errors	PGS1	HGNC	ENSG00000087157	134	0	0	294	62	17.42	-	-	-	T	76388701	C	T	76388701	3	4	569	1	0	0	0	0	1	0	0	0	11882	535	19	1	294	1	PGS1	17	76388701	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	260154	76388701	4806509	1083	51039										
DNAH17	0	genome.wustl.edu	37	chr17	76456047	76456047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacgttgaccacagcatccgGcggggacccaaaggacttca	12	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76456047	76456047	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.9430	p.P3144S	0.858	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	139	0	0	253	62	19.68	-	-	-	A	76456047	G	A	76456047	3	1	569	1	0	0	0	0	1	0	0	0	4637	1203	42	4	4004	4	DNAH17	17	76456047	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	67346	76456047	4739163	1084	51040										
DNAH17	0	genome.wustl.edu	37	chr17	76492000	76492000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggcagctccgcgcgtccggCgtacccagggttcatggtga	15	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76492000	76492000	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.5818	p.A1940T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	331	1	0.3	610	125	16.94	-	-	-	T	76492000	C	T	76492000	3	4	569	1	0	0	0	0	1	0	0	0	4637	768	27	1	7704	1	DNAH17	17	76492000	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	35953	76492000	4703210	1085	51041										
USP36	0	genome.wustl.edu	37	chr17	76798528	76798528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccatcctcttctactgccCgctgtgtctcctgctttctt	6	17	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76798528	76798528	C	T	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	missense	c.2900	p.R967Q	0.996	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	64	0	0	125	19	13.19	-	-	-	T	76798528	C	T	76798528	3	4	569	1	0	0	0	0	1	0	0	0	17164	652	23	1	487	1	USP36	17	76798528	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	306528	76798528	4396682	1086	51042										
LGALS3BP	0	genome.wustl.edu	37	chr17	76972105	76972105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctcgaagcccagggcccgGcagacgacgctggcatcagt	13	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	76972105	76972105	G	A	SNP	LGALS3BP	ENST00000262776	human	ensembl	69_37n	-1	known	silent	c.186	p.C62	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,prints_Srcr_rcpt,pfscan_BTB/POZ-like,pfscan_Srcr_rcpt	-	no_errors	LGALS3BP	HGNC	ENSG00000108679	28	0	0	46	13	22.03	-	-	-	A	76972105	G	A	76972105	2	1	569	1	0	0	0	0	0	0	0	1	8798	1195	42	4		4	LGALS3BP	17	76972105	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	173577	76972105	4223105	1087	51043										
ENPP7	0	genome.wustl.edu	37	chr17	77708966	77708966	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgagacggagtggagagcgaAcatcgacacagtgatggcgt	16	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	77708966	77708966	A	G	SNP	ENPP7	ENST00000328313	human	ensembl	69_37n	1	known	missense	c.524	p.N175S	1.000	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156	34	0	0	81	14	14.74	-	-	-	G	77708966	A	G	77708966	3	3	569	1	0	0	0	0	1	0	0	0	5172	43	2	5	534	5	ENPP7	17	77708966	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	736861	77708966	3486244	1088	51044										
GAA	0	genome.wustl.edu	37	chr17	78084571	78084571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgacttcaccaaccccacaGccctggcctggtgggaggac	11	17	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78084571	78084571	G	A	SNP	GAA	ENST00000302262	human	ensembl	69_37n	1	known	missense	c.1483	p.A495T	0.007	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298	265	0	0	493	87	15	-	-	-	A	78084571	G	A	78084571	3	1	569	1	0	0	0	0	1	0	0	0	6196	971	34	4	1517	4	GAA	17	78084571	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	375605	78084571	3110639	1089	51045										
SGSH	0	genome.wustl.edu	37	chr17	78188916	78188916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggtgcacgtcctggtgcaGcccgtacatcccattctgat	11	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78188916	78188916	G	A	SNP	SGSH	ENST00000326317	human	ensembl	69_37n	-1	known	silent	c.271	p.L91	1.000	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	SGSH	HGNC	ENSG00000181523	73	0	0	138	19	12.03	-	-	-	A	78188916	G	A	78188916	2	1	569	1	0	0	0	0	0	0	0	1	14309	962	34	4		4	SGSH	17	78188916	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	104345	78188916	3006294	1090	51046										
RNF213	0	genome.wustl.edu	37	chr17	78320424	78320424	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctgcatcgagctgaagatTcccctcttcctggtggggaa	12	11	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78320424	78320424	T	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.8289	p.I2763	0.939	smart_AAA+_ATPase	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	24	0	0	58	17	22.67	-	-	-	C	78320424	T	C	78320424	2	2	569	1	0	0	0	0	0	0	0	1	13563	1771	62	5		5	RNF213	17	78320424	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	131508	78320424	2874786	1091	51047										
RNF213	0	genome.wustl.edu	37	chr17	78321794	78321794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccctctgacgtcttcatcgGctaccactcggacgcctgcg	9	18	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78321794	78321794	G	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.9659	p.G3220D	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	128	0	0	261	43	13.61	-	-	-	A	78321794	G	A	78321794	3	1	569	1	0	0	0	0	1	0	0	0	13563	1203	42	4	10088	4	RNF213	17	78321794	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1370	78321794	2873416	1092	51048										
RNF213	0	genome.wustl.edu	37	chr17	78332203	78332203	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaggccagatactccgcccTgggcaagagatctttggatg	12	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78332203	78332203	T	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.10978	p.W3660R	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	219	0	0	421	73	14.78	-	-	-	C	78332203	T	C	78332203	3	2	569	1	0	0	0	0	1	0	0	0	13563	1580	55	5	11439	5	RNF213	17	78332203	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	10409	78332203	2863007	1093	51049										
RPTOR	0	genome.wustl.edu	37	chr17	78820339	78820339	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcaccatgggcgtggagaacCgaaacccacccgaacagctg	11	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	78820339	78820339	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	nonsense	c.1279	p.R427*	1.000	superfamily_ARM-type_fold,prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	115	0	0	216	41	15.95	-	-	-	T	78820339	C	T	78820339	4	4	569	1	0	0	0	0	0	1	0	0	13751	644	23	1	1321	1	RPTOR	17	78820339	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	488136	78820339	2374871	1094	51050										
AZI1	0	genome.wustl.edu	37	chr17	79170839	79170839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctccaggggccccggccccGcctccggcacccacccctgc	11	24	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	79170839	79170839	G	A	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	missense	c.1673	p.A558V	0.348	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	61	0	0	91	25	20.33	-	-	-	A	79170839	G	A	79170839	3	1	569	1	0	0	0	0	1	0	0	0	1244	1087	38	1	1630	1	AZI1	17	79170839	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	350500	79170839	2024371	1095	51051										
BAHCC1	0	genome.wustl.edu	37	chr17	79428464	79428464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgggcaaggacaagaaggggCgggcacccatccccccgctg	15	14	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	79428464	79428464	C	T	SNP	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	missense	c.6775	p.R2259W	0.797	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	16	0	0	31	7	18.42	-	-	-	T	79428464	C	T	79428464	3	4	569	1	0	0	0	0	1	0	0	0	1300	759	27	1	6708	1	BAHCC1	17	79428464	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	257625	79428464	1766746	1096	51052										
SLC25A10	0	genome.wustl.edu	37	chr17	79681982	79681982	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgagagcactcactcccgcaGgtgcatctgcagacgcagca	11	14	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	79681982	79681982	G	T	SNP	SLC25A10	ENST00000331531	human	ensembl	69_37n	1	known	splice_site	c.94-1	e2-1	1.000	-	-	-	no_errors	SLC25A10	HGNC	ENSG00000183048	26	0	0	44	16	26.67	-	-	-	T	79681982	G	T	79681982	5	4	569	1	0	0	0	0	0	0	1	0	14561	1014	35	4	99	4	SLC25A10	17	79681982	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	253518	79681982	1513228	1097	51053										
LRRC45	0	genome.wustl.edu	37	chr17	79981611	79981611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagcagctgcaccagcttcCcaggggccggctggacctgg	15	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	79981611	79981611	C	T	SNP	LRRC45	ENST00000306688	human	ensembl	69_37n	1	known	missense	c.92	p.P31L	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC45	HGNC	ENSG00000169683	14	0	0	29	7	19.44	-	-	-	T	79981611	C	T	79981611	3	4	569	1	0	0	0	0	1	0	0	0	9068	623	22	4	94	4	LRRC45	17	79981611	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	299629	79981611	1213599	1098	51054										
DUS1L	0	genome.wustl.edu	37	chr17	80019598	80019598	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagggatggccacagccttcCtgttggcagagaaatgcctg	13	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	80019598	80019598	C	A	SNP	DUS1L	ENST00000306796	human	ensembl	69_37n	-1	known	splice_site	c.594-1	e6-1	1.000	-	-	-	no_errors	DUS1L	HGNC	ENSG00000169718	61	0	0	117	29	19.86	-	-	-	A	80019598	C	A	80019598	5	1	569	1	0	0	0	0	0	0	1	0	4840	695	24	4	860	4	DUS1L	17	80019598	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	37987	80019598	1175612	1099	51055										
SLC16A3	0	genome.wustl.edu	37	chr17	80195570	80195570	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgttcttcaacggcctcgcGgacctggcgggttctacggc	13	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	80195570	80195570	G	A	SNP	SLC16A3	ENST00000392339	human	ensembl	69_37n	1	known	silent	c.924	p.A308	0.051	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A3	HGNC	ENSG00000141526	98	0	0	224	49	17.88	-	-	-	A	80195570	G	A	80195570	2	1	569	1	0	0	0	0	0	0	0	1	14498	1103	39	1		1	SLC16A3	17	80195570	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	175972	80195570	999640	1100	51056										
UTS2R	0	genome.wustl.edu	37	chr17	80332445	80332445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacctgccgctccctgcgtgCggtggcctccatgtacgtct	11	17	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	17	80332445	80332445	C	T	SNP	UTS2R	ENST00000313135	human	ensembl	69_37n	1	known	missense	c.245	p.A82V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Urot_II_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	UTS2R	HGNC	ENSG00000181408	32	0	0	68	14	17.07	-	-	-	T	80332445	C	T	80332445	3	4	569	1	0	0	0	0	1	0	0	0	17203	768	27	1	247	1	UTS2R	17	80332445	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	136875	80332445	862765	1101	51057										
RBBP8	0	genome.wustl.edu	37	chr18	20572915	20572915	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atatctagattagaaaaaacTagatcaaaatctgaagatag	6	4	3	5			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	20572915	20572915	T	A	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	silent	c.1125	p.T375	0.005	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	58	0	0	57	41	41.84	-	-	-	A	20572915	T	A	20572915	2	1	569	1	0	0	0	0	0	0	0	1	13188	1509	53	5		5	RBBP8	18	20572915	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09		20572915	57504333	1102	51058										
KIAA1328	0	genome.wustl.edu	37	chr18	34752976	34752976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaagatgcgtctacatctccTatgccaacaggaagcctaaa	7	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	34752976	34752976	T	C	SNP	KIAA1328	ENST00000587139	human	ensembl	69_37n	1	putative	missense	c.1526	p.L509P	0.976	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1328	HGNC	ENSG00000150477	252	0	0	203	94	31.65	-	-	-	C	34752976	T	C	34752976	3	2	569	1	0	0	0	0	1	0	0	0	8277	1509	53	5	1489	5	KIAA1328	18	34752976	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	14180061	34752976	43324272	1103	51059										
CELF4	0	genome.wustl.edu	37	chr18	34854368	34854368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcattcgccgcatcgtgCgctccttgtcggtgtcggcg	14	14	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	34854368	34854368	C	T	SNP	CELF4	ENST00000361795	human	ensembl	69_37n	-1	known	missense	c.707	p.R236H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489	31	0	0	12	16	57.14	-	-	-	T	34854368	C	T	34854368	3	4	569	1	0	0	0	0	1	0	0	0	3247	768	27	1	781	1	CELF4	18	34854368	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	101392	34854368	43222880	1104	51060										
SETBP1	0	genome.wustl.edu	37	chr18	42532404	42532404	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacaccatgacaaaggtgccTtttttacaagggttcagcta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	42532404	42532404	T	-	DEL	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	frame_shift_del	c.3099	p.L1035fs	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	160	0	0	102	52	33.55	-	-	-	-	42532404	T	-	42532404	7	5	569	1	0	1	0	1	0	0	0	0	14217	1596	56	0	3302	0	SETBP1	18	42532404	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	7678036	42532404	35544844	1105	51061										
PSTPIP2	0	genome.wustl.edu	37	chr18	43571950	43571950	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attctcatacatgatgggtgCtaggagagtcaccaagaaac	10	8	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	43571950	43571950	C	T	SNP	PSTPIP2	ENST00000409746	human	ensembl	69_37n	-1	known	splice_site	c.839-1	e12-1	1.000	-	-	-	no_errors	PSTPIP2	HGNC	ENSG00000152229	343	2	0.58	236	133	35.95	-	-	-	T	43571950	C	T	43571950	5	4	569	1	0	0	0	0	0	0	1	0	12802	811	28	4	178	4	PSTPIP2	18	43571950	Splice_Site	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1039546	43571950	34505298	1106	51062										
PIAS2	0	genome.wustl.edu	37	chr18	44424815	44424815	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagtaattctacaaacaaacAaaaaaaacctgcattaaaga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	44424815	44424815	A	-	DEL	PIAS2	ENST00000591865	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.945	-	-	-	no_errors	PIAS2	HGNC	ENSG00000078043	155	0	0	102	53	33.12	-	-	-	-	44424815	A	-	44424815	6	5	569	0	1	1	0	1	0	0	0	0	11950	145	5	0		0	PIAS2	18	44424815	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	852865	44424815	33652433	1107	51063										
MAPK4	0	genome.wustl.edu	37	chr18	48256159	48256159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aactgggcgacctcaatggtGcgtgcatccccgagcaccct	11	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	48256159	48256159	G	A	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.1699	p.A567T	0.938	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	23	0	0	14	7	33.33	-	-	-	A	48256159	G	A	48256159	3	1	569	1	0	0	0	0	1	0	0	0	9351	1319	46	4	1717	4	MAPK4	18	48256159	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3831344	48256159	29821089	1108	51064										
TXNL1	0	genome.wustl.edu	37	chr18	54281731	54281731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttaatatcatcctctgtcAgttccagagcttgagttggt	8	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	54281731	54281731	A	G	SNP	TXNL1	ENST00000217515	human	ensembl	69_37n	-1	known	missense	c.659	p.L220P	1.000	pfam_PITH_dom,superfamily_Galactose-bd-like	pfam_PITH_dom,pfam_Thioredoxin_domain,superfamily_Galactose-bd-like,superfamily_Thioredoxin-like_fold	-	no_errors	TXNL1	HGNC	ENSG00000091164	387	0	0	272	169	38.24	-	-	-	G	54281731	A	G	54281731	3	3	569	1	0	0	0	0	1	0	0	0	16901	188	7	5	222	5	TXNL1	18	54281731	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	6025572	54281731	23795517	1109	51065										
NARS	0	genome.wustl.edu	37	chr18	55287867	55287867	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcatcgcttccctctcggtcAgagacgtacagctctgctgt	10	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	55287867	55287867	A	G	SNP	NARS	ENST00000256854	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	0.021	NULL	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS	HGNC	ENSG00000134440	411	0	0	272	160	37.04	-	-	-	G	55287867	A	G	55287867	2	3	569	1	0	0	0	0	0	0	0	1	10242	175	7	5		5	NARS	18	55287867	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1006136	55287867	22789381	1110	51066										
LMAN1	0	genome.wustl.edu	37	chr18	57006121	57006121	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcttgatttcaagatgaatAcgattctgtccttcaaagac	7	8	3	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	57006121	57006121	A	G	SNP	LMAN1	ENST00000251047	human	ensembl	69_37n	-1	known	silent	c.1020	p.R340	0.962	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl,superfamily_HMG_superfamily	-	no_errors	LMAN1	HGNC	ENSG00000074695	346	0	0	235	162	40.6	-	-	-	G	57006121	A	G	57006121	2	3	569	1	0	0	0	0	0	0	0	1	8892	378	14	5		5	LMAN1	18	57006121	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1718254	57006121	21071127	1111	51067										
DSEL	0	genome.wustl.edu	37	chr18	65181126	65181126	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctttagatcctttatctacTccagtcaccaaggcccctgt	6	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	65181126	65181126	T	C	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	silent	c.750	p.G250	0.570	superfamily_Chondroitin_lyas	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	270	0	0	168	126	42.86	-	-	-	C	65181126	T	C	65181126	2	2	569	1	0	0	0	0	0	0	0	1	4810	1538	54	5		5	DSEL	18	65181126	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	8175005	65181126	12896122	1112	51068										
ZNF236	0	genome.wustl.edu	37	chr18	74639295	74639295	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctattggctcagcagctcacGggggagcctggcctggcccc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	74639295	74639295	G	-	DEL	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	frame_shift_del	c.4230	p.E1412fs	0.299	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	93	0	0	60	36	36	-	-	-	-	74639295	G	-	74639295	7	5	569	1	0	1	0	1	0	0	0	0	17885	1103	39	0	4324	0	ZNF236	18	74639295	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	9458169	74639295	3437953	1113	51069										
MBP	0	genome.wustl.edu	37	chr18	74701940	74701940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaagaagtggactacggggTtttcatcttgggtccggccg	15	8	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	18	74701940	74701940	T	C	SNP	MBP	ENST00000355994	human	ensembl	69_37n	-1	known	missense	c.653	p.N218S	0.998	pfam_Myelin_BP,prints_Myelin_BP	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971	550	2	0.35	362	193	34.22	-	-	-	C	74701940	T	C	74701940	3	2	569	1	0	0	0	0	1	0	0	0	9430	1725	60	5	281	5	MBP	18	74701940	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	62645	74701940	3375308	1114	51070										
THEG	0	genome.wustl.edu	37	chr19	375704	375704	+	Silent	SNP	T	T	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccaagtccttgtccaggacTctctccaactcagaaagtgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	375704	375704	T	C	SNP	THEG	ENST00000342640	human	ensembl	69_37n	-1	known	silent	c.267	p.R89	0.013	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549	132	0	0	91	43	32.09	-	-	-	C	375704	T	C	375704	2	2	569	1	0	0	0	0	0	0	0	1	15952	1548	54	5		5	THEG	19	375704	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09		375704	58753279	1115	51071	424	2								
THEG	0	genome.wustl.edu	37	chr19	375710	375710	+	Silent	SNP	C	C	T													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccttgtccaggactctctcCaactcagaaagtgcctcttt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	375710	375710	C	T	SNP	THEG	ENST00000342640	human	ensembl	69_37n	-1	known	silent	c.261	p.L87	0.005	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549	131	0	0	96	46	32.39	-	-	-	T	375710	C	T	375710	2	4	569	1	0	0	0	0	0	0	0	1	15952	593	21	4		4	THEG	19	375710	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6	375710	58753273	1116	51072	424	2								
HCN2	0	genome.wustl.edu	37	chr19	613253	613253	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctcccccctgcaggagatCgtcaacttcaactgccggaa	9	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	613253	613253	C	T	SNP	HCN2	ENST00000251287	human	ensembl	69_37n	1	known	silent	c.1590	p.I530	0.989	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	69	0	0	47	29	38.16	-	-	-	T	613253	C	T	613253	2	4	569	1	0	0	0	0	0	0	0	1	7048	874	31	1		1	HCN2	19	613253	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	237543	613253	58515730	1117	51073										
RNF126	0	genome.wustl.edu	37	chr19	648216	648216	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctcaccccagtgaggccaGgggggttcgtggccgtgttc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	648216	648216	G	-	DEL	RNF126	ENST00000292363	human	ensembl	69_37n	-1	known	frame_shift_del	c.848	p.P283fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF126	HGNC	ENSG00000070423	234	0	0	69	130	62.5	-	-	-	-	648216	G	-	648216	7	5	569	1	0	1	0	1	0	0	0	0	13521	1000	35	0	91	0	RNF126	19	648216	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	34963	648216	58480767	1118	51074										
SBNO2	0	genome.wustl.edu	37	chr19	1123591	1123591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccagctcctccgcctcctcCtcctcagcctcgtcctcctc	4	25	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	1123591	1123591	C	A	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	missense	c.570	p.E190D	0.972	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	188	0	0	109	69	38.76	-	-	-	A	1123591	C	A	1123591	3	1	569	1	0	0	0	0	1	0	0	0	13950	680	24	4	3634	4	SBNO2	19	1123591	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	475375	1123591	58005392	1119	51075										
APC2	0	genome.wustl.edu	37	chr19	1456366	1456366	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgagacagaggtccccacacAccctgaggatggcacccctc	10	17	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	1456366	1456366	A	G	SNP	APC2	ENST00000233607	human	ensembl	69_37n	1	known	missense	c.779	p.H260R	0.998	NULL	pfam_APC_basic_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	25	0	0	18	9	32.14	-	-	-	G	1456366	A	G	1456366	3	3	569	1	0	0	0	0	1	0	0	0	765	159	6	5	805	5	APC2	19	1456366	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	332775	1456366	57672617	1120	51076										
KHSRP	0	genome.wustl.edu	37	chr19	6415897	6415898	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtactggtgaggagggggINSccccccggcactgcaggaga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	6415897	6415898	-	C	INS	KHSRP	ENST00000398148	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1609_1608	p.P536fs	1.000:0.001	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHSRP	HGNC	ENSG00000088247	12	0	0	13	12	48	-	-	-	C	6415898	-	C	6415897	7	5	569	1	0	1	1	0	0	0	0	0	8203	1203	42	0	546	0	KHSRP	19	6415897	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	4959531	6415897	52713086	1121	51077										
LRRC8E	0	genome.wustl.edu	37	chr19	7960502	7960502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggcagcatgatcccagtggCcgagttcaagcagttcacgg	13	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	7960502	7960502	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	1	known	missense	c.14	p.A5V	0.778	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	101	0	0	75	47	37.9	-	-	-	T	7960502	C	T	7960502	3	4	569	1	0	0	0	0	1	0	0	0	9091	739	26	4	16	4	LRRC8E	19	7960502	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1544605	7960502	51168481	1122	51078										
KANK3	0	genome.wustl.edu	37	chr19	8387756	8387756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggttctctccattgtcaccGcattctccttcaccaggtgt	8	14	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	8387756	8387756	G	A	SNP	KANK3	ENST00000330915	human	ensembl	69_37n	-1	known	silent	c.2433	p.C811	0.001	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	146	1	0.67	43	108	71.05	-	-	-	A	8387756	G	A	8387756	2	1	569	1	0	0	0	0	0	0	0	1	8032	1079	38	1		1	KANK3	19	8387756	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	427254	8387756	50741227	1123	51079										
PRAM1	0	genome.wustl.edu	37	chr19	8563815	8563815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctctgaggaggtcctggtgaGgtccccaagctcaggctgcg	15	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	8563815	8563815	G	T	SNP	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	missense	c.877	p.L293I	0.125	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	41	0	0	21	12	36.36	-	-	-	T	8563815	G	T	8563815	3	4	569	1	0	0	0	0	1	0	0	0	12500	1000	35	4	1168	4	PRAM1	19	8563815	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	176059	8563815	50565168	1124	51080										
MUC16	0	genome.wustl.edu	37	chr19	9007831	9007831	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggtggtgagcccagagctCcgatgggtgaaacctgcata	14	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	9007831	9007831	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.39393	p.R13131	0.000	smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	693	1	0.14	172	518	74.96	-	-	-	T	9007831	C	T	9007831	2	4	569	1	0	0	0	0	0	0	0	1	10045	842	30	2		2	MUC16	19	9007831	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	444016	9007831	50121152	1125	51081										
MUC16	0	genome.wustl.edu	37	chr19	9074412	9074412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgttccgctagagaaagtgGcttgtgtcttggtgacatga	13	6	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	9074412	9074412	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.13034	p.A4345V	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	456	0	0	352	169	32.31	-	-	-	A	9074412	G	A	9074412	3	1	569	1	0	0	0	0	1	0	0	0	10045	1203	42	4	30817	4	MUC16	19	9074412	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	66581	9074412	50054571	1126	51082										
MUC16	0	genome.wustl.edu	37	chr19	9076843	9076843	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtggtggagatacctggagTaggagctgtggttacgtcca	17	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	9076843	9076843	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.10603	p.T3535A	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	610	1	0.16	376	229	37.54	-	-	-	C	9076843	T	C	9076843	3	2	569	1	0	0	0	0	1	0	0	0	10045	1638	57	5	33248	5	MUC16	19	9076843	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2431	9076843	50052140	1127	51083										
OR7D2	0	genome.wustl.edu	37	chr19	9297382	9297382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagtctcctcagcagggcaGcctcttgtttgtgatggatc	13	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	9297382	9297382	G	A	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.925	p.A309T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	52	0	0	29	16	34.78	-	-	-	A	9297382	G	A	9297382	3	1	569	1	0	0	0	0	1	0	0	0	11292	971	34	4	927	4	OR7D2	19	9297382	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	220539	9297382	49831601	1128	51084										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10221410	10221410	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcatgaagaaggcacgggtcGggggtagtgatgaagaggcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	10221410	10221410	G	-	DEL	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	frame_shift_del	c.1069	p.G358fs	0.000	NULL	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	91	0	0	39	59	58.42	-	-	-	-	10221410	G	-	10221410	7	5	569	1	0	1	0	1	0	0	0	0	12362	1116	39	0	1111	0	PPAN-P2RY11	19	10221410	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	924028	10221410	48907573	1129	51085										
DNMT1	0	genome.wustl.edu	37	chr19	10260314	10260314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catctgcccgttgctgctgtCctcccacagcgccgtgaccc	9	19	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	10260314	10260314	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.2401	p.D801N	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	103	0	0	79	43	35.25	-	-	-	T	10260314	C	T	10260314	3	4	569	1	0	0	0	0	1	0	0	0	4710	855	30	2	2561	2	DNMT1	19	10260314	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	38904	10260314	48868669	1130	51086										
KRI1	0	genome.wustl.edu	37	chr19	10668270	10668270	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcacagggcaccactgtgcgGtacttgaagcgacagggcag	14	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	10668270	10668270	G	T	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	nonsense	c.1593	p.Y531*	1.000	pfam_KRR1-interact_protein_1	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	166	0	0	158	25	13.59	-	-	-	T	10668270	G	T	10668270	4	4	569	1	0	0	0	0	0	1	0	0	8497	1256	44	4	552	4	KRI1	19	10668270	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	407956	10668270	48460713	1131	51087										
SMARCA4	0	genome.wustl.edu	37	chr19	11118633	11118635	+	In_Frame_Del	DEL	AGA	AGA	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccaccctgcccgtggaggAgaagaagaagattccagatc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	11118633	11118635	AGA	-	DEL	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	in_frame_del	c.2057_2059	p.K689in_frame_del	1.000:0.994:1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	161	0	0	58	100	62.11	-	-	-	-	11118635	AGA	-	11118633	7	5	569	1	0	1	0	1	0	0	0	0	14859	304	11	0	2107	0	SMARCA4	19	11118633	In_Frame_Del	DEL	AGA	TCGA-BH-A18G-01A-11D-A12B-09	450363	11118633	48010350	1132	51088										
DOCK6	0	genome.wustl.edu	37	chr19	11323971	11323971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggcacaggtcggcacacaGctccgtgtcctcctcgaaca	10	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	11323971	11323971	G	A	SNP	DOCK6	ENST00000587656	human	ensembl	69_37n	-1	novel	missense	c.2237	p.A746V	1.000	NULL	pfam_DOCK	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK6	HGNC	ENSG00000130158	36	0	0	12	33	73.33	-	-	-	A	11323971	G	A	11323971	3	1	569	1	0	0	0	0	1	0	0	0	4726	962	34	4	1827	4	DOCK6	19	11323971	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	205338	11323971	47805012	1133	51089										
TSPAN16	0	genome.wustl.edu	37	chr19	11417267	11417269	+	In_Frame_Del	DEL	CTC	CTC	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggactctccaagtatttcttCtcctctctatagctaaagtg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	11417267	11417269	CTC	-	DEL	TSPAN16	ENST00000337994	human	ensembl	69_37n	1	known	in_frame_del	c.471_473	p.S159in_frame_del	0.000:0.000:0.000	NULL	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	TSPAN16	HGNC	ENSG00000130167	151	0	0	50	112	69.14	-	-	-	-	11417269	CTC	-	11417267	7	5	569	1	0	1	0	1	0	0	0	0	16736	928	32	0		0	TSPAN16	19	11417267	In_Frame_Del	DEL	CTC	TCGA-BH-A18G-01A-11D-A12B-09	93296	11417267	47711716	1134	51090										
MAN2B1	0	genome.wustl.edu	37	chr19	12768311	12768311	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcgcgtagtcgttggccacGtgctggcgggaggtgccgct	18	12	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	12768311	12768311	G	A	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	silent	c.1368	p.H456	0.992	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	14	0	0	10	7	41.18	-	-	-	A	12768311	G	A	12768311	2	1	569	1	0	0	0	0	0	0	0	1	9287	1136	40	1		1	MAN2B1	19	12768311	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1351044	12768311	46360672	1135	51091										
CACNA1A	0	genome.wustl.edu	37	chr19	13397466	13397466	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctcgggggtcttgggggggCcgggattggatgggttcccc	20	9	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	13397466	13397466	C	G	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.3404	p.G1135A	0.996	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	157	0	0	65	31	32.29	-	-	-	G	13397466	C	G	13397466	3	3	569	1	0	0	0	0	1	0	0	0	2563	739	26	4	4330	4	CACNA1A	19	13397466	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	629155	13397466	45731517	1136	51092										
MRI1	0	genome.wustl.edu	37	chr19	13876943	13876943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctggctatggtacagccctaGgtgagagggcctcctcaggg	15	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	13876943	13876943	G	T	SNP	MRI1	ENST00000040663	human	ensembl	69_37n	1	known	missense	c.547	p.G183C	0.997	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	-	no_errors	MRI1	HGNC	ENSG00000037757	38	0	0	20	12	37.5	-	-	-	T	13876943	G	T	13876943	3	4	569	1	0	0	0	0	1	0	0	0	9842	1014	35	4	557	4	MRI1	19	13876943	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	479477	13876943	45252040	1137	51093										
ZSWIM4	0	genome.wustl.edu	37	chr19	13936462	13936462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcaggacgcctgcaagacaGccaccccggtcagcgcccca	11	19	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	13936462	13936462	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.1963	p.A655T	0.994	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	33	0	0	19	23	54.76	-	-	-	A	13936462	G	A	13936462	3	1	569	1	0	0	0	0	1	0	0	0	18334	971	34	4	2005	4	ZSWIM4	19	13936462	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	59519	13936462	45192521	1138	51094										
RFX1	0	genome.wustl.edu	37	chr19	14093025	14093025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcgctctgcaccaccagacGctgcgtgggaagagcctggg	15	13	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	14093025	14093025	G	A	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	missense	c.529	p.R177C	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	19	0	0	17	12	41.38	-	-	-	A	14093025	G	A	14093025	3	1	569	1	0	0	0	0	1	0	0	0	13345	1087	38	1	2478	1	RFX1	19	14093025	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	156563	14093025	45035958	1139	51095										
OR7A17	0	genome.wustl.edu	37	chr19	14991326	14991326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggggttcagcatgggggtgGccacagtgtacatcactgag	16	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	14991326	14991326	G	A	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	missense	c.842	p.A281V	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	359	0	0	80	245	75.15	-	-	-	A	14991326	G	A	14991326	3	1	569	1	0	0	0	0	1	0	0	0	11288	1203	42	4	89	4	OR7A17	19	14991326	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	898301	14991326	44137657	1140	51096										
NOTCH3	0	genome.wustl.edu	37	chr19	15272336	15272337	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccccaggccgtggggaccINSgggggggctgcggggcccac							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	15272336	15272337	-	G	INS	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6103_6102	p.G2034fs	0.958:0.235	pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	32	0	0	18	17	48.57	-	-	-	G	15272337	-	G	15272336	7	5	569	1	0	1	1	0	0	0	0	0	10622	652	23	0	866	0	NOTCH3	19	15272336	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	281010	15272336	43856647	1141	51097										
MYO9B	0	genome.wustl.edu	37	chr19	17305621	17305621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccagagaagactctcccaCcccagaaaaccgtggcggct	10	16	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	17305621	17305621	C	T	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.3385	p.P1129S	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	84	0	0	63	29	31.52	-	-	-	T	17305621	C	T	17305621	3	4	569	1	0	0	0	0	1	0	0	0	10157	507	18	4	3467	4	MYO9B	19	17305621	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2033285	17305621	41823362	1142	51098										
MYO9B	0	genome.wustl.edu	37	chr19	17309065	17309065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaagaagaagccaggcgacGcatcctccctcccagacgca	10	15	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	17309065	17309065	G	A	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.4186	p.A1396T	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	138	1	0.72	98	54	35.06	-	-	-	A	17309065	G	A	17309065	3	1	569	1	0	0	0	0	1	0	0	0	10157	1087	38	1	4276	1	MYO9B	19	17309065	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3444	17309065	41819918	1143	51099										
KIAA1683	0	genome.wustl.edu	37	chr19	18375212	18375212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acggggcccagggagggcccCcatgcggccgatggactcct	16	15	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	18375212	18375212	C	A	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	missense	c.3138	p.W1046C	0.006	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	36	0	0	8	39	82.98	-	-	-	A	18375212	C	A	18375212	3	1	569	1	0	0	0	0	1	0	0	0	8303	624	22	4	973	4	KIAA1683	19	18375212	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1066147	18375212	40753771	1144	51100										
KLHL26	0	genome.wustl.edu	37	chr19	18779977	18779977	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacaccgacgagtgggagcgGgacctgcacttcccggagtc	15	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	18779977	18779977	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	69_37n	1	known	silent	c.1770	p.R590	0.997	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487	13	0	0	1	5	83.33	-	-	-	A	18779977	G	A	18779977	2	1	569	1	0	0	0	0	0	0	0	1	8434	1219	43	4		4	KLHL26	19	18779977	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	404765	18779977	40349006	1145	51101										
RFXANK	0	genome.wustl.edu	37	chr19	19308331	19308331	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcccgcctcctcctgccaggTgacaacctcgtcaacaagcc	8	19	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	19308331	19308331	T	C	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	silent	c.339	p.G113	0.754	superfamily_Ankyrin_rpt-contain_dom,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	23	0	0	22	11	32.35	-	-	-	C	19308331	T	C	19308331	2	2	569	1	0	0	0	0	0	0	0	1	13352	1710	59	5		5	RFXANK	19	19308331	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	528354	19308331	39820652	1146	51102										
NCAN	0	genome.wustl.edu	37	chr19	19360666	19360666	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccgcaaggagcgcagaaaAcacaagaaacacccaacgga	9	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	19360666	19360666	A	G	SNP	NCAN	ENST00000588231	human	ensembl	69_37n	1	novel	missense	c.473	p.N158S	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCAN	HGNC	ENSG00000130287	1175	1	0.08	743	422	36.1	-	-	-	G	19360666	A	G	19360666	3	3	569	1	0	0	0	0	1	0	0	0	10276	40	2	5	3966	5	NCAN	19	19360666	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	52335	19360666	39768317	1147	51103										
ZNF737	0	genome.wustl.edu	37	chr19	20728293	20728293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtaaggtatgaaaaccggCtaaaggctttgccacagtct	10	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	20728293	20728293	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	missense	c.716	p.S239N	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	143	0	0	78	38	32.76	-	-	-	T	20728293	C	T	20728293	3	4	569	1	0	0	0	0	1	0	0	0	18220	797	28	4	898	4	ZNF737	19	20728293	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1367627	20728293	38400690	1148	51104										
ZNF100	0	genome.wustl.edu	37	chr19	21910146	21910146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaccggttaaaagctttgCcacattctgtacatttgtag	9	8	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	21910146	21910146	C	T	SNP	ZNF100	ENST00000358296	human	ensembl	69_37n	-1	known	missense	c.968	p.G323D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020	68	0	0	34	7	17.07	-	-	-	T	21910146	C	T	21910146	3	4	569	1	0	0	0	0	1	0	0	0	17809	739	26	4	664	4	ZNF100	19	21910146	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1181853	21910146	37218837	1149	51105										
ZNF676	0	genome.wustl.edu	37	chr19	22363639	22363639	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttatgttccatgagctttgAggacgagttggaagctttgc	12	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	22363639	22363639	A	T	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.880	p.S294T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	222	0	0	157	74	32.03	-	-	-	T	22363639	A	T	22363639	3	4	569	1	0	0	0	0	1	0	0	0	18179	304	11	5	890	5	ZNF676	19	22363639	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	453493	22363639	36765344	1150	51106										
POP4	0	genome.wustl.edu	37	chr19	30101471	30101471	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcaaggagaagaagaagaaAgccaaaggcctctctgccag	12	10	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	30101471	30101471	A	G	SNP	POP4	ENST00000585603	human	ensembl	69_37n	1	known	silent	c.216	p.K72	0.543	pirsf_RNase_P/MRP_p29-subunit	pfam_RNase_P/MRP_p29,superfamily_Rof/RNase_P-like,smart_RNase_P/MRP_p29,pirsf_RNase_P/MRP_p29-subunit	-	no_errors	POP4	HGNC	ENSG00000105171	78	0	0	48	25	34.25	-	-	-	G	30101471	A	G	30101471	2	3	569	1	0	0	0	0	0	0	0	1	12326	69	3	5		5	POP4	19	30101471	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7737832	30101471	29027512	1151	51107										
ZNF507	0	genome.wustl.edu	37	chr19	32873310	32873312	+	RNA	DEL	ATG	ATG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ataataattgttacagaatcAtgataatttttcactgatgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	32873310	32873312	ATG	-	DEL	ZNF507	ENST00000586664	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	ZNF507	HGNC	ENSG00000168813	293	0	0	219	98	30.91	-	-	-	-	32873312	ATG	-	32873310	6	5	569	0	1	1	0	1	0	0	0	0	18049	232	8	0		0	ZNF507	19	32873310	RNA	DEL	ATG	TCGA-BH-A18G-01A-11D-A12B-09	2771839	32873310	26255673	1152	51108										
RBM42	0	genome.wustl.edu	37	chr19	36125260	36125260	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgggaggaccccagcctgCtggagtgggatgcaggtaag	18	9	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	36125260	36125260	C	T	SNP	RBM42	ENST00000262633	human	ensembl	69_37n	1	known	silent	c.1120	p.L374	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254	49	0	0	35	11	23.91	-	-	-	T	36125260	C	T	36125260	2	4	569	1	0	0	0	0	0	0	0	1	13219	796	28	4		4	RBM42	19	36125260	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3251950	36125260	23003723	1153	51109										
MLL4	0	genome.wustl.edu	37	chr19	36210803	36210803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccggaaacggggtgaggaagGcacagaacggatggtgcagg	19	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	36210803	36210803	G	A	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.554	p.G185D	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	34	0	0	24	15	38.46	-	-	-	A	36210803	G	A	36210803	3	1	569	1	0	0	0	0	1	0	0	0	9694	1203	42	4	564	4	MLL4	19	36210803	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	85543	36210803	22918180	1154	51110										
KIRREL2	0	genome.wustl.edu	37	chr19	36353864	36353864	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccgagcaaaagaacctgatgCgaatccctggcagcagcgac	11	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	36353864	36353864	C	T	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	nonsense	c.1651	p.R551*	0.970	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	104	0	0	69	41	37.27	-	-	-	T	36353864	C	T	36353864	4	4	569	1	0	0	0	0	0	1	0	0	8378	760	27	1	1701	1	KIRREL2	19	36353864	Nonsense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	143061	36353864	22775119	1155	51111										
ZFP82	0	genome.wustl.edu	37	chr19	36884529	36884529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gatgtactctaagatctgcaCcacatatgaaagcttcccca	6	12	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	36884529	36884529	C	T	SNP	ZFP82	ENST00000392161	human	ensembl	69_37n	-1	known	missense	c.713	p.G238D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007	372	1	0.27	242	155	39.04	-	-	-	T	36884529	C	T	36884529	3	4	569	1	0	0	0	0	1	0	0	0	17749	507	18	4	889	4	ZFP82	19	36884529	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	530665	36884529	22244454	1156	51112										
ZNF607	0	genome.wustl.edu	37	chr19	38190323	38190323	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtcgactaagtcgtccatAcacactaaaggccttgccac	7	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	38190323	38190323	A	G	SNP	ZNF607	ENST00000355202	human	ensembl	69_37n	-1	known	missense	c.709	p.Y237H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182	172	0	0	105	48	31.37	-	-	-	G	38190323	A	G	38190323	3	3	569	1	0	0	0	0	1	0	0	0	18129	391	14	5	1385	5	ZNF607	19	38190323	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1305794	38190323	20938660	1157	51113										
RASGRP4	0	genome.wustl.edu	37	chr19	38901820	38901820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggtcctgcatcgcccttgGcccctggcctcttcttacat	10	16	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	38901820	38901820	G	C	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	missense	c.1787	p.A596G	0.069	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	281	0	0	140	111	44.05	-	-	-	C	38901820	G	C	38901820	3	2	569	1	0	0	0	0	1	0	0	0	13160	1203	42	4	246	4	RASGRP4	19	38901820	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	711497	38901820	20227163	1158	51114										
RYR1	0	genome.wustl.edu	37	chr19	38976361	38976361	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgctctgtgcagccacgtagAccaagctcagctgctgcacg	11	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	38976361	38976361	A	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.5066	p.D1689G	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	25	0	0	12	14	53.85	-	-	-	G	38976361	A	G	38976361	3	3	569	1	0	0	0	0	1	0	0	0	13854	275	10	5	5200	5	RYR1	19	38976361	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	74541	38976361	20152622	1159	51115										
FCGBP	0	genome.wustl.edu	37	chr19	40399610	40399610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccgcagcgacaccactgggAgcaggtgccatcagcccaaa	11	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	40399610	40399610	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.6085	p.S2029P	0.072	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	10	0	0	4	10	71.43	-	-	-	G	40399610	A	G	40399610	3	3	569	1	0	0	0	0	1	0	0	0	5824	304	11	5	10228	5	FCGBP	19	40399610	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1423249	40399610	18729373	1160	51116										
ZNF780B	0	genome.wustl.edu	37	chr19	40540903	40540903	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agctgggtgtgaagactgaaGgccttgccacattccttaca	11	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	40540903	40540903	G	T	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	silent	c.1863	p.A621	0.924	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	353	0	0	256	134	34.36	-	-	-	T	40540903	G	T	40540903	2	4	569	1	0	0	0	0	0	0	0	1	18246	987	35	4		4	ZNF780B	19	40540903	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	141293	40540903	18588080	1161	51117										
ZNF780A	0	genome.wustl.edu	37	chr19	40581186	40581186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacattccttacattcaaacGgtttttcacctgtgtgaatg	6	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	40581186	40581186	G	A	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	missense	c.1166	p.P389L	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	354	0	0	226	132	36.77	-	-	-	A	40581186	G	A	40581186	3	1	569	1	0	0	0	0	1	0	0	0	18245	1116	39	1	893	1	ZNF780A	19	40581186	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	40283	40581186	18547797	1162	51118										
SHKBP1	0	genome.wustl.edu	37	chr19	41084069	41084069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctactacccaggggtgtccaCggttccagcctcctccatga	9	16	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	41084069	41084069	C	T	SNP	SHKBP1	ENST00000291842	human	ensembl	69_37n	1	known	silent	c.270	p.H90	0.903	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410	150	0	0	100	50	33.11	-	-	-	T	41084069	C	T	41084069	2	4	569	1	0	0	0	0	0	0	0	1	14373	535	19	1		1	SHKBP1	19	41084069	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	502883	41084069	18044914	1163	51119										
CYP2S1	0	genome.wustl.edu	37	chr19	41699228	41699228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcgctgctcctgctgctgaCgctggcgctgtccgggacca	15	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	41699228	41699228	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	missense	c.59	p.T20M	0.004	prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	13	0	0	5	4	44.44	-	-	-	T	41699228	C	T	41699228	3	4	569	1	0	0	0	0	1	0	0	0	4205	536	19	1	61	1	CYP2S1	19	41699228	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	615159	41699228	17429755	1164	51120										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41807551	41807551	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacctaaaagaccgaacaatAaagcgaaccgacgaggaagg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	41807551	41807551	A	-	DEL	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	frame_shift_del	c.1629	p.K544fs	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	224	0	0	160	88	35.06	-	-	-	-	41807551	A	-	41807551	7	5	569	1	0	1	0	1	0	0	0	0	7325	352	13	0	1671	0	HNRNPUL1	19	41807551	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	108323	41807551	17321432	1165	51121										
BCKDHA	0	genome.wustl.edu	37	chr19	41925061	41925061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgctgatgtatcgggactAccccctggaactattcatgg	11	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	41925061	41925061	A	G	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	1	known	missense	c.506	p.Y169C	1.000	pfam_DH_E1	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	200	2	0.99	154	75	32.61	-	-	-	G	41925061	A	G	41925061	3	3	569	1	0	0	0	0	1	0	0	0	1363	391	14	5	524	5	BCKDHA	19	41925061	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	117510	41925061	17203922	1166	51122										
ATP1A3	0	genome.wustl.edu	37	chr19	42474445	42474445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcggcagcctcgtacgccaGtgagatggcagggacctagg	15	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	42474445	42474445	G	A	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	silent	c.2473	p.L825	0.095	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	224	1	0.44	146	81	35.68	-	-	-	A	42474445	G	A	42474445	2	1	569	1	0	0	0	0	0	0	0	1	1134	1020	36	4		4	ATP1A3	19	42474445	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	549384	42474445	16654538	1167	51123										
MEGF8	0	genome.wustl.edu	37	chr19	42860340	42860340	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccctcatggacagccgcctcTcagccgtgagttgtgggtac	12	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	42860340	42860340	T	C	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.4498	p.S1500P	0.964	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	75	0	0	51	22	30.14	-	-	-	C	42860340	T	C	42860340	3	2	569	1	0	0	0	0	1	0	0	0	9534	1551	54	5	4391	5	MEGF8	19	42860340	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	385895	42860340	16268643	1168	51124										
PSG6	0	genome.wustl.edu	37	chr19	43414746	43414746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actcacggaggagattcaggGtgactgggtcactgcggctg	16	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	43414746	43414746	G	A	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.692	p.T231I	0.053	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	299	0	0	162	100	38.17	-	-	-	A	43414746	G	A	43414746	3	1	569	1	0	0	0	0	1	0	0	0	12739	1261	44	4	670	4	PSG6	19	43414746	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	554406	43414746	15714237	1169	51125										
ZNF222	0	genome.wustl.edu	37	chr19	44536586	44536586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcacagaattcatactggGgagaagccattcaaatgtga	9	8	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	44536586	44536586	G	A	SNP	ZNF222	ENST00000391960	human	ensembl	69_37n	1	known	silent	c.879	p.G293	0.963	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF222	HGNC	ENSG00000159885	307	0	0	203	126	38.3	-	-	-	A	44536586	G	A	44536586	2	1	569	1	0	0	0	0	0	0	0	1	17872	1219	43	4		4	ZNF222	19	44536586	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1121840	44536586	14592397	1170	51126										
PVR	0	genome.wustl.edu	37	chr19	45150758	45150758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaggatgttcgggttgcgcGtagaggatgaaggcaactac	16	6	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	45150758	45150758	G	A	SNP	PVR	ENST00000425690	human	ensembl	69_37n	1	known	missense	c.343	p.V115I	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVR	HGNC	ENSG00000073008	73	0	0	54	29	34.94	-	-	-	A	45150758	G	A	45150758	3	1	569	1	0	0	0	0	1	0	0	0	12920	1145	40	1	349	1	PVR	19	45150758	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	614172	45150758	13978225	1171	51127										
PVRL2	0	genome.wustl.edu	37	chr19	45381809	45381809	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcatgttgcctccacccccaGcactcgaggatgacatggag	10	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	45381809	45381809	G	A	SNP	PVRL2	ENST00000591581	human	ensembl	69_37n	1	novel	splice_site	c.565-1	e4-1	0.000	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PVRL2	HGNC	ENSG00000130202	52	0	0	45	18	28.57	-	-	-	A	45381809	G	A	45381809	5	1	569	1	0	0	0	0	0	0	1	0	12923	971	34	4	1394	4	PVRL2	19	45381809	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	231051	45381809	13747174	1172	51128										
CKM	0	genome.wustl.edu	37	chr19	45822868	45822868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcttcttgtagagttcaaggGtcagtaccttggccatgtgg	13	8	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	45822868	45822868	G	A	SNP	CKM	ENST00000221476	human	ensembl	69_37n	-1	known	missense	c.104	p.T35I	0.999	pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKM	HGNC	ENSG00000104879	624	1	0.16	394	233	37.1	-	-	-	A	45822868	G	A	45822868	3	1	569	1	0	0	0	0	1	0	0	0	3478	1261	44	4	1069	4	CKM	19	45822868	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	441059	45822868	13306115	1173	51129										
NOVA2	0	genome.wustl.edu	37	chr19	46464289	46464289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggggtagaagtctttggactTggagagcttgatggtggctc	17	5	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	46464289	46464289	T	C	SNP	NOVA2	ENST00000263257	human	ensembl	69_37n	-1	known	missense	c.208	p.K70E	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967	163	0	0	110	49	30.63	-	-	-	C	46464289	T	C	46464289	3	2	569	1	0	0	0	0	1	0	0	0	10627	1821	63	5	1282	5	NOVA2	19	46464289	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	641421	46464289	12664694	1174	51130										
ARHGAP35	0	genome.wustl.edu	37	chr19	47422332	47422332	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagctgaaaaactcatgtacTtttgcactgaccagctgggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	47422332	47422332	T	-	DEL	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	frame_shift_del	c.400	p.C135fs	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	157	0	0	116	61	33.52	-	-	-	-	47422332	T	-	47422332	7	5	569	1	0	1	0	1	0	0	0	0	6846	1609	56	0	402	0	ARHGAP35	19	47422332	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	958043	47422332	11706651	1175	51131										
ARHGAP35	0	genome.wustl.edu	37	chr19	47423374	47423374	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggatatttatggcaaacaccAaaagcaaattatagataaag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	47423374	47423374	A	-	DEL	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	frame_shift_del	c.1442	p.K482fs	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	60	0	0	55	33	36.67	-	-	-	-	47423374	A	-	47423374	7	5	569	1	0	1	0	1	0	0	0	0	6846	130	5	0	1444	0	ARHGAP35	19	47423374	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	1042	47423374	11705609	1176	51132										
SAE1	0	genome.wustl.edu	37	chr19	47706960	47706960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgagatggccccagtgtgtgCggtggttggagggattttgg	19	6	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	47706960	47706960	C	T	SNP	SAE1	ENST00000270225	human	ensembl	69_37n	1	known	missense	c.911	p.A304V	0.999	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230	628	0	0	430	292	40.39	-	-	-	T	47706960	C	T	47706960	3	4	569	1	0	0	0	0	1	0	0	0	13891	768	27	1	941	1	SAE1	19	47706960	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	283586	47706960	11422023	1177	51133										
GPR77	0	genome.wustl.edu	37	chr19	47844308	47844308	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggcggatttgctgtgctgTttgtctctgcccatcctggc	13	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	47844308	47844308	T	C	SNP	GPR77	ENST00000257267	human	ensembl	69_37n	1	known	silent	c.252	p.C84	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_C5A_anaphtx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_C5A_anaphtx_rcpt	-	no_errors	GPR77	HGNC	ENSG00000134830	104	0	0	60	29	32.22	-	-	-	C	47844308	T	C	47844308	2	2	569	1	0	0	0	0	0	0	0	1	6759	1731	60	5		5	GPR77	19	47844308	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	137348	47844308	11284675	1178	51134										
SLC8A2	0	genome.wustl.edu	37	chr19	47960697	47960697	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtccagctcgatgctcttcGgggggtcgccctcggcgcct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	47960697	47960697	G	-	DEL	SLC8A2	ENST00000236877	human	ensembl	69_37n	-1	known	frame_shift_del	c.830	p.P277fs	1.000	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	31	0	0	17	9	34.62	-	-	-	-	47960697	G	-	47960697	7	5	569	1	0	1	0	1	0	0	0	0	14796	1116	39	0	1967	0	SLC8A2	19	47960697	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	116389	47960697	11168286	1179	51135										
LIG1	0	genome.wustl.edu	37	chr19	48668813	48668813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggagggtgctcacatgataCttcgctgcatgttggcgtca	14	9	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	48668813	48668813	C	T	SNP	LIG1	ENST00000263274	human	ensembl	69_37n	-1	known	missense	c.11	p.S4N	1.000	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold-like,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	337	0	0	213	134	38.62	-	-	-	T	48668813	C	T	48668813	3	4	569	1	0	0	0	0	1	0	0	0	8836	565	20	4	2856	4	LIG1	19	48668813	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	708116	48668813	10460170	1180	51136										
PPP1R15A	0	genome.wustl.edu	37	chr19	49377486	49377486	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgagtgtcctccctgcatCcccccaccaagtgccttcct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	49377486	49377486	C	-	DEL	PPP1R15A	ENST00000200453	human	ensembl	69_37n	1	known	frame_shift_del	c.996	p.P334fs	0.000	NULL	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074	237	0	0	173	78	30.59	-	-	-	-	49377486	C	-	49377486	7	5	569	1	0	1	0	1	0	0	0	0	12440	845	30	0	998	0	PPP1R15A	19	49377486	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	708673	49377486	9751497	1181	51137										
HRC	0	genome.wustl.edu	37	chr19	49654782	49654782	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttacacacttactgataaagGgacgaggagaaatagtcaac	9	7	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	49654782	49654782	G	T	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	silent	c.2055	p.S685	0.805	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	192	0	0	129	66	33.85	-	-	-	T	49654782	G	T	49654782	2	4	569	1	0	0	0	0	0	0	0	1	7403	1219	43	4		4	HRC	19	49654782	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	277296	49654782	9474201	1182	51138										
CCDC155	0	genome.wustl.edu	37	chr19	49913062	49913062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccctctgtgtggggtgtggcAgtgggaggaagtcatccatg	17	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	49913062	49913062	A	G	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.1199	p.Q400R	0.989	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	207	0	0	128	64	33.33	-	-	-	G	49913062	A	G	49913062	3	3	569	1	0	0	0	0	1	0	0	0	2814	188	7	5	1253	5	CCDC155	19	49913062	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	258280	49913062	9215921	1183	51139										
FCGRT	0	genome.wustl.edu	37	chr19	50017386	50017386	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctttcaaagctttggggggAaaaggtgagattccggtctg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50017386	50017386	A	-	DEL	FCGRT	ENST00000221466	human	ensembl	69_37n	1	known	frame_shift_del	c.321	p.G109fs	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	FCGRT	HGNC	ENSG00000104870	70	0	0	43	25	36.23	-	-	-	-	50017386	A	-	50017386	7	5	569	1	0	1	0	1	0	0	0	0	5832	233	9	0	327	0	FCGRT	19	50017386	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	104324	50017386	9111597	1184	51140										
IRF3	0	genome.wustl.edu	37	chr19	50164025	50164025	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggggccatgactcccccAcacagaaccagagggcatag	11	15	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50164025	50164025	A	C	SNP	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	missense	c.1043	p.V348G	0.012	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	72	0	0	49	22	30.99	-	-	-	C	50164025	A	C	50164025	3	2	569	1	0	0	0	0	1	0	0	0	7885	159	6	5	248	5	IRF3	19	50164025	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	146639	50164025	8964958	1185	51141										
NUP62	0	genome.wustl.edu	37	chr19	50412810	50412811	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccccaaagaaaatccagttINSccccccgaagcaagagtcgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50412810	50412811	-	C	INS	NUP62	ENST00000352066	human	ensembl	69_37n	-1	known	frame_shift_ins	c.255_254	p.T86fs	0.002:0.030	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024	278	0	0	199	78	28.16	-	-	-	C	50412811	-	C	50412810	7	5	569	1	0	1	1	0	0	0	0	0	10841	1770	62	0	1317	0	NUP62	19	50412810	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	248785	50412810	8716173	1186	51142										
MYH14	0	genome.wustl.edu	37	chr19	50785040	50785040	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggacgacgccaccatggacCtggagcagcagcggcagctt	14	13	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50785040	50785040	C	A	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.4480	p.L1494M	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	8	0	0	5	4	44.44	-	-	-	A	50785040	C	A	50785040	3	1	569	1	0	0	0	0	1	0	0	0	10105	680	24	4	4606	4	MYH14	19	50785040	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	372230	50785040	8343943	1187	51143										
POLD1	0	genome.wustl.edu	37	chr19	50906815	50906815	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggttacaacatccagaacttCgaccttccgtacctcatctc	5	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50906815	50906815	C	T	SNP	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	silent	c.1203	p.F401	0.261	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	244	0	0	193	95	32.87	-	-	-	T	50906815	C	T	50906815	2	4	569	1	0	0	0	0	0	0	0	1	12264	883	31	1		1	POLD1	19	50906815	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	121775	50906815	8222168	1188	51144										
MYBPC2	0	genome.wustl.edu	37	chr19	50938423	50938423	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcccctaccttacagcggccAaaaaggcccccaaaggcaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	50938423	50938423	A	-	DEL	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	frame_shift_del	c.25	p.K10fs	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	22	0	0	15	9	37.5	-	-	-	-	50938423	A	-	50938423	7	5	569	1	0	1	0	1	0	0	0	0	10084	131	5	0	31	0	MYBPC2	19	50938423	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	31608	50938423	8190560	1189	51145										
SYT3	0	genome.wustl.edu	37	chr19	51128491	51128491	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgcccagtgctcgcggccGtgcgggtcggcagcgtcggg	18	14	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	51128491	51128491	G	A	SNP	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	silent	c.1635	p.H545	0.996	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	31	0	0	21	10	31.25	-	-	-	A	51128491	G	A	51128491	2	1	569	1	0	0	0	0	0	0	0	1	15567	1136	40	1		1	SYT3	19	51128491	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	190068	51128491	8000492	1190	51146										
SIGLEC6	0	genome.wustl.edu	37	chr19	52033147	52033148	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggaaccagctcaggtgtgcaINSggggggttgccgtcagcatc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	52033147	52033148	-	G	INS	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	frame_shift_ins	c.843_842	p.A282fs	0.979:0.995	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	365	0	0	272	113	29.35	-	-	-	G	52033148	-	G	52033147	7	5	569	1	0	1	1	0	0	0	0	0	14401	175	7	0	534	0	SIGLEC6	19	52033147	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	904656	52033147	7095836	1191	51147										
PPP2R1A	0	genome.wustl.edu	37	chr19	52715982	52715982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgacacccccatggtgcggCgggccgcagcctccaagctg	13	16	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	52715982	52715982	C	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	69_37n	1	known	missense	c.547	p.R183W	1.000	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	76	0	0	56	36	38.71	-	-	-	T	52715982	C	T	52715982	3	4	569	1	0	0	0	0	1	0	0	0	12459	759	27	1	565	1	PPP2R1A	19	52715982	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	682835	52715982	6413001	1192	51148										
ZNF28	0	genome.wustl.edu	37	chr19	53303462	53303462	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgtacggtttctctgcagTatgaagtttatgatgacatg	10	5	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	53303462	53303462	T	C	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	missense	c.1636	p.T546A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	304	0	0	193	107	35.67	-	-	-	C	53303462	T	C	53303462	3	2	569	1	0	0	0	0	1	0	0	0	17909	1638	57	5	524	5	ZNF28	19	53303462	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	587480	53303462	5825521	1193	51149										
ZNF160	0	genome.wustl.edu	37	chr19	53572768	53572768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacactcattacacttgtaaGgtttctctccagtatgaatt	5	10	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	53572768	53572768	G	A	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.1019	p.P340L	0.967	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	239	0	0	145	91	38.56	-	-	-	A	53572768	G	A	53572768	3	1	569	1	0	0	0	0	1	0	0	0	17835	1000	35	4	1441	4	ZNF160	19	53572768	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	269306	53572768	5556215	1194	51150										
PRKCG	0	genome.wustl.edu	37	chr19	54403525	54403525	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggagtacgtcaccgggggAgacttgatgtaccacattca	12	9	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	54403525	54403525	A	G	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	silent	c.1320	p.G440	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	150	1	0.66	70	66	48.53	-	-	-	G	54403525	A	G	54403525	2	3	569	1	0	0	0	0	0	0	0	1	12593	291	11	5		5	PRKCG	19	54403525	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	830757	54403525	4725458	1195	51151										
CACNG7	0	genome.wustl.edu	37	chr19	54445489	54445489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtccatccaaatgacgcagaActaccctcccgccatcaagt	6	16	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	54445489	54445489	A	G	SNP	CACNG7	ENST00000222212	human	ensembl	69_37n	1	known	missense	c.770	p.N257S	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605	147	0	0	118	39	24.53	-	-	-	G	54445489	A	G	54445489	3	3	569	1	0	0	0	0	1	0	0	0	2587	43	2	5	788	5	CACNG7	19	54445489	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	41964	54445489	4683494	1196	51152										
CNOT3	0	genome.wustl.edu	37	chr19	54656170	54656170	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaccctccccacagacatcAtcctgagcagtacatcagca	5	18	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	54656170	54656170	A	G	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.1711	p.I571V	0.994	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	89	0	0	56	30	34.88	-	-	-	G	54656170	A	G	54656170	3	3	569	1	0	0	0	0	1	0	0	0	3650	217	8	5	1765	5	CNOT3	19	54656170	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	210681	54656170	4472813	1197	51153										
MBOAT7	0	genome.wustl.edu	37	chr19	54678002	54678002	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggccccctgggctcagccgCccccgcagggctgactccag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	54678002	54678002	C	-	DEL	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	frame_shift_del	c.1155	p.R386fs	0.033	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	65	0	0	51	21	28	-	-	-	-	54678002	C	-	54678002	7	5	569	1	0	1	0	1	0	0	0	0	9429	726	26	0	267	0	MBOAT7	19	54678002	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	21832	54678002	4450981	1198	51154										
LILRB5	0	genome.wustl.edu	37	chr19	54756385	54756385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtccttgggctctggccccGcagcccctgcaggacggtag	15	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	54756385	54756385	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	missense	c.1475	p.A492V	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	417	0	0	229	123	34.55	-	-	-	A	54756385	G	A	54756385	3	1	569	1	0	0	0	0	1	0	0	0	8849	1087	38	1	289	1	LILRB5	19	54756385	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	78383	54756385	4372598	1199	51155										
NLRP11	0	genome.wustl.edu	37	chr19	56320345	56320345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catagagacagtaaaacaaaGgcatatggtgcgtcaacttt	9	7	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	56320345	56320345	G	T	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.1631	p.P544H	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	233	0	0	120	73	37.63	-	-	-	T	56320345	G	T	56320345	3	4	569	1	0	0	0	0	1	0	0	0	10545	1000	35	4	1502	4	NLRP11	19	56320345	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1563960	56320345	2808638	1200	51156										
ZNF71	0	genome.wustl.edu	37	chr19	57133284	57133284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaccagcgcacgcacacggGcgagaagccgtatgtgtgcg	15	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	57133284	57133284	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	69_37n	1	known	missense	c.629	p.G210D	0.685	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	39	0	0	15	11	42.31	-	-	-	A	57133284	G	A	57133284	3	1	569	1	0	0	0	0	1	0	0	0	18210	1203	42	4	631	4	ZNF71	19	57133284	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	812939	57133284	1995699	1201	51157										
ZNF549	0	genome.wustl.edu	37	chr19	58049574	58049574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgggaaatccttcatatacaAacagtcacttcttgatcacc	5	11	4	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	58049574	58049574	A	G	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.1202	p.K401R	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	204	0	0	108	49	31.21	-	-	-	G	58049574	A	G	58049574	3	3	569	1	0	0	0	0	1	0	0	0	18077	14	1	5	1173	5	ZNF549	19	58049574	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	916290	58049574	1079409	1202	51158										
ZNF329	0	genome.wustl.edu	37	chr19	58639419	58639419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gacttcccacattctggacaCtgatatggggtctccttagt	9	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	58639419	58639419	C	T	SNP	ZNF329	ENST00000358067	human	ensembl	69_37n	-1	known	silent	c.1452	p.Q484	0.056	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894	206	0	0	123	102	45.33	-	-	-	T	58639419	C	T	58639419	2	4	569	1	0	0	0	0	0	0	0	1	17943	564	20	4		4	ZNF329	19	58639419	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	589845	58639419	489564	1203	51159										
ZNF329	0	genome.wustl.edu	37	chr19	58639690	58639690	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	attcatagggtttctccccaGaatggatcttttgatgcaca	8	9	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	19	58639690	58639690	G	T	SNP	ZNF329	ENST00000358067	human	ensembl	69_37n	-1	known	missense	c.1181	p.S394Y	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894	117	0	0	70	38	35.19	-	-	-	T	58639690	G	T	58639690	3	4	569	1	0	0	0	0	1	0	0	0	17943	942	33	2	448	2	ZNF329	19	58639690	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	271	58639690	489293	1204	51160										
CSNK2A1	0	genome.wustl.edu	37	chr20	469361	469361	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacgtggatctaattcaatgTtgtatttgtcaatatagtca	7	5	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	469361	469361	T	C	SNP	CSNK2A1	ENST00000217244	human	ensembl	69_37n	-1	known	missense	c.785	p.N262S	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266	364	0	0	265	151	36.3	-	-	-	C	469361	T	C	469361	3	2	569	1	0	0	0	0	1	0	0	0	3989	1725	60	5	406	5	CSNK2A1	20	469361	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09		469361	62556159	1205	51161										
SIRPD	0	genome.wustl.edu	37	chr20	1515074	1515074	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccttccctgtttggattaTtttgacagcaagcctgaaat	7	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	1515074	1515074	T	A	SNP	SIRPD	ENST00000381621	human	ensembl	69_37n	-1	known	missense	c.594	p.K198N	0.022	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIRPD	HGNC	ENSG00000125900	360	0	0	232	136	36.96	-	-	-	A	1515074	T	A	1515074	3	1	569	1	0	0	0	0	1	0	0	0	14424	1490	52	5	6	5	SIRPD	20	1515074	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1045713	1515074	61510446	1206	51162										
SIRPG	0	genome.wustl.edu	37	chr20	1611081	1611081	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttgaacctgcatcctgcccAggctatcttcactccagcac	6	16	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	1611081	1611081	A	G	SNP	SIRPG	ENST00000497407	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SIRPG	HGNC	ENSG00000089012	35	0	0	23	13	36.11	-	-	-	G	1611081	A	G	1611081	1	3	569	0	1	0	0	0	0	0	0	0	14425	203	7	5		5	SIRPG	20	1611081	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	96007	1611081	61414439	1207	51163										
ADRA1D	0	genome.wustl.edu	37	chr20	4229077	4229077	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaggccgtgcagcacagcacGtccacggcggcccatacgtc	13	16	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	4229077	4229077	G	A	SNP	ADRA1D	ENST00000379453	human	ensembl	69_37n	-1	known	silent	c.528	p.D176	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A1A,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1D	HGNC	ENSG00000171873	47	0	0	33	17	34	-	-	-	A	4229077	G	A	4229077	2	1	569	1	0	0	0	0	0	0	0	1	336	1136	40	1		1	ADRA1D	20	4229077	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2617996	4229077	58796443	1208	51164										
SLC23A2	0	genome.wustl.edu	37	chr20	4837735	4837735	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagtagctgaagcatctgtaTttttttataatgttcatgcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	4837735	4837735	T	-	DEL	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	frame_shift_del	c.1836	p.K612fs	0.948	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	418	0	0	252	127	33.07	-	-	-	-	4837735	T	-	4837735	7	5	569	1	0	1	0	1	0	0	0	0	14552	1490	52	0	120	0	SLC23A2	20	4837735	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	608658	4837735	58187785	1209	51165										
SLC23A2	0	genome.wustl.edu	37	chr20	4855308	4855308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggaaatttaacatttctggCgtattgagaaaacagtaata	8	4	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	4855308	4855308	C	T	SNP	SLC23A2	ENST00000338244	human	ensembl	69_37n	-1	known	missense	c.859	p.A287T	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	260	0	0	191	98	33.91	-	-	-	T	4855308	C	T	4855308	3	4	569	1	0	0	0	0	1	0	0	0	14552	768	27	1	1125	1	SLC23A2	20	4855308	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	17573	4855308	58170212	1210	51166										
MCM8	0	genome.wustl.edu	37	chr20	5953787	5953787	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagaattccaattcggggagAcccccacatccttgttgttg	9	12	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	5953787	5953787	A	T	SNP	MCM8	ENST00000378886	human	ensembl	69_37n	1	known	missense	c.1460	p.D487V	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885	357	0	0	205	157	43.25	-	-	-	T	5953787	A	T	5953787	3	4	569	1	0	0	0	0	1	0	0	0	9464	275	10	5	1382	5	MCM8	20	5953787	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1098479	5953787	57071733	1211	51167										
PLCB4	0	genome.wustl.edu	37	chr20	9318694	9318694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctccctcatcaacagtattCggtcgggagccataccaaag	9	13	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	9318694	9318694	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.205	p.R69W	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	239	0	0	153	118	42.91	-	-	-	T	9318694	C	T	9318694	3	4	569	1	0	0	0	0	1	0	0	0	12104	875	31	1	215	1	PLCB4	20	9318694	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3364907	9318694	53706826	1212	51168										
PLCB4	0	genome.wustl.edu	37	chr20	9382159	9382159	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccaagaggaggaagctcaCcccgaattcaaatttggaaa							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	9382159	9382159	C	-	DEL	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	frame_shift_del	c.1533	p.E513fs	1.000	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	201	0	0	156	91	36.69	-	-	-	-	9382159	C	-	9382159	7	5	569	1	0	1	0	1	0	0	0	0	12104	506	18	0	1599	0	PLCB4	20	9382159	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	63465	9382159	53643361	1213	51169										
BTBD3	0	genome.wustl.edu	37	chr20	11903955	11903955	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccagtttgcagttgataaaAgagtgttcattgctggcttt	10	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	11903955	11903955	A	G	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	missense	c.1210	p.R404G	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	152	1	0.65	112	79	41.15	-	-	-	G	11903955	A	G	11903955	3	3	569	1	0	0	0	0	1	0	0	0	1553	64	3	5	1224	5	BTBD3	20	11903955	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2521796	11903955	51121565	1214	51170										
RALGAPA2	0	genome.wustl.edu	37	chr20	20553666	20553666	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtgccaaccagtgaggctCcccccggcgattatactaca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	20553666	20553666	C	-	DEL	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	frame_shift_del	c.2754	p.S919fs	0.998	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	131	1	0.75	125	69	35.2	-	-	-	-	20553666	C	-	20553666	7	5	569	1	0	1	0	1	0	0	0	0	13097	842	30	0	2943	0	RALGAPA2	20	20553666	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	8649711	20553666	42471854	1215	51171										
SSTR4	0	genome.wustl.edu	37	chr20	23016519	23016519	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcctcaacatgttcaccagCgtcttctgtctcaccgtgct	8	15	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	23016519	23016519	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.399	p.S133	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	113	0	0	58	24	29.27	-	-	-	T	23016519	C	T	23016519	2	4	569	1	0	0	0	0	0	0	0	1	15291	767	27	1		1	SSTR4	20	23016519	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2462853	23016519	40009001	1216	51172										
PYGB	0	genome.wustl.edu	37	chr20	25277269	25277269	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggtccctgcttttctgagtAccatgtttccaggaggggcc	12	11	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	25277269	25277269	A	G	SNP	PYGB	ENST00000471359	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PYGB	HGNC	ENSG00000100994	14	0	0	7	6	46.15	-	-	-	G	25277269	A	G	25277269	1	3	569	0	1	0	0	0	0	0	0	0	12943	406	14	5		5	PYGB	20	25277269	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2260750	25277269	37748251	1217	51173										
TP53INP2	0	genome.wustl.edu	37	chr20	33296585	33296586	+	Frame_Shift_Ins	INS	-	-	C													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttcttcagcaccccctcgINSccccccgaagaccccgactg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	33296585	33296586	-	C	INS	TP53INP2	ENST00000374809	human	ensembl	69_37n	1	known	frame_shift_ins	c.42_43	p.E16fs	0.000:0.030	NULL	NULL	-	no_errors	TP53INP2	HGNC	ENSG00000078804	217	0	0	148	63	29.86	-	-	-	C	33296586	-	C	33296585	7	5	569	1	0	1	1	0	0	0	0	0	16485	1074	38	0	44	0	TP53INP2	20	33296585	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	8019316	33296585	29728935	1218	51174										
MMP24	0	genome.wustl.edu	37	chr20	33839815	33839815	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagtggaggcaaaaacacaTcacctacaggtgcttcgact	10	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	33839815	33839815	T	A	SNP	MMP24	ENST00000246186	human	ensembl	69_37n	1	known	missense	c.503	p.I168N	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP24	HGNC	ENSG00000125966	186	0	0	141	79	35.75	-	-	-	A	33839815	T	A	33839815	3	1	569	1	0	0	0	0	1	0	0	0	9733	1435	50	5	263	5	MMP24	20	33839815	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	543230	33839815	29185705	1219	51175										
MMP24	0	genome.wustl.edu	37	chr20	33862164	33862164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctacccgcgcaacatcctgCgtgactggatgggctgcaac	12	14	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	33862164	33862164	C	T	SNP	MMP24	ENST00000246186	human	ensembl	69_37n	1	known	missense	c.1690	p.R564C	0.357	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP24	HGNC	ENSG00000125966	172	0	0	114	68	37.36	-	-	-	T	33862164	C	T	33862164	3	4	569	1	0	0	0	0	1	0	0	0	9733	768	27	1	1474	1	MMP24	20	33862164	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	22349	33862164	29163356	1220	51176										
FAM83C	0	genome.wustl.edu	37	chr20	33875618	33875618	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccacagggggaggacgcaGtgcccggggagacagcgggt	21	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	33875618	33875618	G	A	SNP	FAM83C	ENST00000374408	human	ensembl	69_37n	-1	known	silent	c.964	p.L322	0.001	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998	136	1	0.72	77	45	36.89	-	-	-	A	33875618	G	A	33875618	2	1	569	1	0	0	0	0	0	0	0	1	5680	1020	36	4		4	FAM83C	20	33875618	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13454	33875618	29149902	1221	51177										
ERGIC3	0	genome.wustl.edu	37	chr20	34143977	34143977	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtgctttgttttcccctcaGcctccatgatgttccagtac	7	13	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	34143977	34143977	G	A	SNP	ERGIC3	ENST00000447986	human	ensembl	69_37n	1	known	splice_site	c.860-1	e11-1	1.000	-	-	-	no_errors	ERGIC3	HGNC	ENSG00000125991	270	0	0	172	115	40.07	-	-	-	A	34143977	G	A	34143977	5	1	569	1	0	0	0	0	0	0	1	0	5262	985	34	4	871	4	ERGIC3	20	34143977	Splice_Site	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	268359	34143977	28881543	1222	51178										
C20orf152	0	genome.wustl.edu	37	chr20	34618401	34618402	+	Frame_Shift_Del	DEL	AG	AG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cactccaaaccggcccaagaAgagagagatctacaacccta							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	34618401	34618402	AG	-	DEL	C20orf152	ENST00000373973	human	ensembl	69_37n	1	known	frame_shift_del	c.1562_1563	p.E523fs	0.899:0.903	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	C20orf152	HGNC	ENSG00000149646	273	0	0	180	101	35.31	-	-	-	-	34618402	AG	-	34618401	7	5	569	1	0	1	0	1	0	0	0	0	2112	72	3	0	1596	0	C20orf152	20	34618401	Frame_Shift_Del	DEL	AG	TCGA-BH-A18G-01A-11D-A12B-09	474424	34618401	28407119	1223	51179										
EPB41L1	0	genome.wustl.edu	37	chr20	34763558	34763558	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaggcccagaaatcgccccAgaagattgccaagaaataca	8	12	0	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	34763558	34763558	A	G	SNP	EPB41L1	ENST00000338074	human	ensembl	69_37n	1	known	missense	c.263	p.Q88R	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L1	HGNC	ENSG00000088367	217	0	0	157	90	36.44	-	-	-	G	34763558	A	G	34763558	3	3	569	1	0	0	0	0	1	0	0	0	5189	188	7	5	269	5	EPB41L1	20	34763558	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	145157	34763558	28261962	1224	51180										
SAMHD1	0	genome.wustl.edu	37	chr20	35547873	35547873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttccatgacaggcttaattCcattagaattaataaggtgc	8	7	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	35547873	35547873	C	T	SNP	SAMHD1	ENST00000262878	human	ensembl	69_37n	-1	known	missense	c.746	p.G249E	0.285	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347	255	1	0.39	187	114	37.87	-	-	-	T	35547873	C	T	35547873	3	4	569	1	0	0	0	0	1	0	0	0	13914	855	30	2	1174	2	SAMHD1	20	35547873	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	784315	35547873	27477647	1225	51181										
ACTR5	0	genome.wustl.edu	37	chr20	37383735	37383735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggcagcagcaattgcggcGgctgcaggagctcaatgccc	15	13	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	37383735	37383735	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	1	known	missense	c.911	p.R304Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	90	0	0	85	43	33.59	-	-	-	A	37383735	G	A	37383735	3	1	569	1	0	0	0	0	1	0	0	0	215	1116	39	1	925	1	ACTR5	20	37383735	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1835862	37383735	25641785	1226	51182										
WISP2	0	genome.wustl.edu	37	chr20	43343936	43343936	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgcgcgtgtgtactcgtgcGtgtgcctgtgtgtgcctggg	18	10	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	43343936	43343936	G	A	SNP	WISP2	ENST00000497421	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	31	0	0	24	16	40	-	-	-	A	43343936	G	A	43343936	1	1	569	0	1	0	0	0	0	0	0	0	17470	1160	40	1		1	WISP2	20	43343936	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	5960201	43343936	19681584	1227	51183										
SEMG2	0	genome.wustl.edu	37	chr20	43850897	43850897	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtagttaacaaacaacaacgTgagactaaaaattctcatca	5	8	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	43850897	43850897	T	C	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	silent	c.624	p.R208	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	196	1	0.51	119	79	39.9	-	-	-	C	43850897	T	C	43850897	2	2	569	1	0	0	0	0	0	0	0	1	14133	1683	59	5		5	SEMG2	20	43850897	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	506961	43850897	19174623	1228	51184										
SDC4	0	genome.wustl.edu	37	chr20	43964515	43964515	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tagggctccggagaagtatcGgccttctaggaggtcctggg	16	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	43964515	43964515	G	A	SNP	SDC4	ENST00000372733	human	ensembl	69_37n	-1	known	nonsense	c.106	p.R36*	0.521	NULL	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC4	HGNC	ENSG00000124145	138	0	0	95	49	34.03	-	-	-	A	43964515	G	A	43964515	4	1	569	1	0	0	0	0	0	1	0	0	14042	1124	39	1	506	1	SDC4	20	43964515	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	113618	43964515	19061005	1229	51185										
PIGT	0	genome.wustl.edu	37	chr20	44050025	44050025	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgatatttctttacacagagGcccccccagtgcccttcctg	7	15	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	44050025	44050025	G	C	SNP	PIGT	ENST00000279036	human	ensembl	69_37n	1	known	missense	c.1036	p.A346P	0.980	pfam_Gpi16	pfam_Gpi16	-	no_errors	PIGT	HGNC	ENSG00000124155	48	0	0	32	13	28.89	-	-	-	C	44050025	G	C	44050025	3	2	569	1	0	0	0	0	1	0	0	0	11973	1203	42	4	1070	4	PIGT	20	44050025	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	85510	44050025	18975495	1230	51186										
SNX21	0	genome.wustl.edu	37	chr20	44469004	44469004	+	RNA	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctctatgggaagggagtacAaaaaaaggggcagcagcccc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	44469004	44469004	A	-	DEL	SNX21	ENST00000465997	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104	165	0	0	139	49	25.26	-	-	-	-	44469004	A	-	44469004	6	5	569	0	1	1	0	1	0	0	0	0	14982	145	5	0		0	SNX21	20	44469004	RNA	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	418979	44469004	18556516	1231	51187										
ZSWIM1	0	genome.wustl.edu	37	chr20	44512102	44512102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gttacatgcagcagaactctGcagacaaggcaaacttcaac	8	11	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	44512102	44512102	G	A	SNP	ZSWIM1	ENST00000372520	human	ensembl	69_37n	1	known	missense	c.871	p.A291T	0.001	NULL	pfam_Znf_SWIM,pfscan_Znf_SWIM	-	no_errors	ZSWIM1	HGNC	ENSG00000168612	116	0	0	69	47	40.52	-	-	-	A	44512102	G	A	44512102	3	1	569	1	0	0	0	0	1	0	0	0	18331	1319	46	4	873	4	ZSWIM1	20	44512102	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	43098	44512102	18513418	1232	51188										
NEURL2	0	genome.wustl.edu	37	chr20	44518963	44518963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaccgcgtagaggggctgcGcagctggcagtccccgggcg	17	15	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	44518963	44518963	G	A	SNP	NEURL2	ENST00000372518	human	ensembl	69_37n	-1	known	missense	c.668	p.A223V	0.720	pfscan_Neu_Z	pfam_Neu_Z,pfam_SOCS_C,smart_Neu_Z,smart_SOCS_C,pfscan_Neu_Z,pfscan_SOCS_C	-	no_errors	NEURL2	HGNC	ENSG00000124257	31	0	0	12	11	47.83	-	-	-	A	44518963	G	A	44518963	3	1	569	1	0	0	0	0	1	0	0	0	10418	1087	38	1	197	1	NEURL2	20	44518963	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	6861	44518963	18506557	1233	51189										
ELMO2	0	genome.wustl.edu	37	chr20	45000518	45000518	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcgtagaatctcagagtaacTcaggctacgcaatttgctct	8	10	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	45000518	45000518	T	G	SNP	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	missense	c.1543	p.S515R	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	138	0	0	103	58	36.02	-	-	-	G	45000518	T	G	45000518	3	3	569	1	0	0	0	0	1	0	0	0	5103	1551	54	5	679	5	ELMO2	20	45000518	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	481555	45000518	18025002	1234	51190										
SLC2A10	0	genome.wustl.edu	37	chr20	45353856	45353856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctcctgggggctctcctcGcctccctggttggtggcttc	13	15	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	45353856	45353856	G	A	SNP	SLC2A10	ENST00000359271	human	ensembl	69_37n	1	known	missense	c.181	p.A61T	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496	228	0	0	148	80	34.48	-	-	-	A	45353856	G	A	45353856	3	1	569	1	0	0	0	0	1	0	0	0	14628	1087	38	1	187	1	SLC2A10	20	45353856	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	353338	45353856	17671664	1235	51191										
PREX1	0	genome.wustl.edu	37	chr20	47256378	47256378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tccaggggtcctcctggatgCtaatctggatcaggctccgg	13	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	47256378	47256378	C	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.3830	p.S1277N	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	332	0	0	219	103	31.89	-	-	-	T	47256378	C	T	47256378	3	4	569	1	0	0	0	0	1	0	0	0	12557	797	28	4	1193	4	PREX1	20	47256378	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1902522	47256378	15769142	1236	51192										
ZNFX1	0	genome.wustl.edu	37	chr20	47870291	47870291	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaggacttccgcagcttctTccactatgacaatcctcggc	7	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	47870291	47870291	T	C	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	missense	c.3017	p.E1006G	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	284	0	0	210	125	37.31	-	-	-	C	47870291	T	C	47870291	3	2	569	1	0	0	0	0	1	0	0	0	18298	1783	62	5	2755	5	ZNFX1	20	47870291	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	613913	47870291	15155229	1237	51193										
SLC9A8	0	genome.wustl.edu	37	chr20	48491322	48491322	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccagtcacccagatcctcAtgcagcagaccctccgcacc	6	21	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	48491322	48491322	A	G	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.1087	p.M363V	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	671	1	0.15	403	221	35.3	-	-	-	G	48491322	A	G	48491322	3	3	569	1	0	0	0	0	1	0	0	0	14809	217	8	5	1081	5	SLC9A8	20	48491322	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	621031	48491322	14534198	1238	51194										
CTCFL	0	genome.wustl.edu	37	chr20	56098943	56098943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgcaccaccacctgcacccCttcttgctgctgtatgctca	6	17	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	56098943	56098943	C	T	SNP	CTCFL	ENST00000423479	human	ensembl	69_37n	-1	known	missense	c.319	p.G107R	0.013	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	112	1	0.88	60	35	36.84	-	-	-	T	56098943	C	T	56098943	3	4	569	1	0	0	0	0	1	0	0	0	4033	681	24	4	1712	4	CTCFL	20	56098943	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7607621	56098943	6926577	1239	51195										
LSM14B	0	genome.wustl.edu	37	chr20	60699716	60699716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgtcccacagataggcctgcGccccccagagaggagattta	11	14	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	60699716	60699716	G	A	SNP	LSM14B	ENST00000253001	human	ensembl	69_37n	1	known	silent	c.171	p.A57	0.504	superfamily_LSM_dom	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657	117	1	0.85	95	66	40.99	-	-	-	A	60699716	G	A	60699716	2	1	569	1	0	0	0	0	0	0	0	1	9121	1074	38	1		1	LSM14B	20	60699716	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4600773	60699716	2325804	1240	51196										
YTHDF1	0	genome.wustl.edu	37	chr20	61834907	61834907	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acttgtcccccatgctgagaAcgcagggttttcagggaaaa	11	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	61834907	61834907	A	G	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	missense	c.385	p.F129L	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	74	0	0	52	28	35	-	-	-	G	61834907	A	G	61834907	3	3	569	1	0	0	0	0	1	0	0	0	17595	43	2	5	1302	5	YTHDF1	20	61834907	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1135191	61834907	1190613	1241	51197										
COL20A1	0	genome.wustl.edu	37	chr20	61959823	61959823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggttcctggagaatgggggCgtggtggccgccaccttgag	18	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	61959823	61959823	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	missense	c.3850	p.R1284C	0.001	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	41	0	0	20	20	48.78	-	-	-	T	61959823	C	T	61959823	3	4	569	1	0	0	0	0	1	0	0	0	3709	768	27	1	3826	1	COL20A1	20	61959823	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	124916	61959823	1065697	1242	51198										
KCNQ2	0	genome.wustl.edu	37	chr20	62062704	62062704	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atttcctacctggaggccccGtaggtttgagtttgcgaact	11	10	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	62062704	62062704	G	T	SNP	KCNQ2	ENST00000359125	human	ensembl	69_37n	-1	known	nonsense	c.1137	p.Y379*	0.998	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	289	0	0	176	91	33.96	-	-	-	T	62062704	G	T	62062704	4	4	569	1	0	0	0	0	0	1	0	0	8137	1140	40	3	1517	3	KCNQ2	20	62062704	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	102881	62062704	962816	1243	51199										
OPRL1	0	genome.wustl.edu	37	chr20	62729364	62729364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aactgccatgagtgtggatcGctatgtagccatctgccacc	10	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	62729364	62729364	G	A	SNP	OPRL1	ENST00000336866	human	ensembl	69_37n	1	known	missense	c.443	p.R148H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_X_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPRL1	HGNC	ENSG00000125510	233	1	0.43	135	74	35.41	-	-	-	A	62729364	G	A	62729364	3	1	569	1	0	0	0	0	1	0	0	0	10959	1087	38	1	449	1	OPRL1	20	62729364	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	666660	62729364	296156	1244	51200										
PCMTD2	0	genome.wustl.edu	37	chr20	62899302	62899302	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaaagattcttgctgtttcTtttgctcctctgatccagcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	20	62899302	62899302	T	-	DEL	PCMTD2	ENST00000308824	human	ensembl	69_37n	1	known	frame_shift_del	c.645	p.F216fs	0.997	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	256	0	0	189	115	37.58	-	-	-	-	62899302	T	-	62899302	7	5	569	1	0	1	0	1	0	0	0	0	11660	1596	56	0	659	0	PCMTD2	20	62899302	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	169938	62899302	126218	1245	51201										
MRAP	0	genome.wustl.edu	37	chr21	33679042	33679042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtcctggtccgcctccccGcagatgaggtgggtaagaag	14	11	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	33679042	33679042	G	A	SNP	MRAP	ENST00000303645	human	ensembl	69_37n	1	known	silent	c.198	p.P66	0.000	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262	282	2	0.7	160	103	39.16	-	-	-	A	33679042	G	A	33679042	2	1	569	1	0	0	0	0	0	0	0	1	9825	1074	38	1		1	MRAP	21	33679042	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09		33679042	14450853	1246	51202										
DONSON	0	genome.wustl.edu	37	chr21	34957050	34957050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctctgctggaaggtacaacGgagctcagaggagagtttgg	16	7	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	34957050	34957050	G	A	SNP	DONSON	ENST00000303071	human	ensembl	69_37n	-1	known	missense	c.631	p.R211C	0.999	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147	124	0	0	95	50	34.48	-	-	-	A	34957050	G	A	34957050	3	1	569	1	0	0	0	0	1	0	0	0	4741	1116	39	1	1097	1	DONSON	21	34957050	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1278008	34957050	13172845	1247	51203										
ITSN1	0	genome.wustl.edu	37	chr21	35183510	35183510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccacgacccctaataactggGccgacttcagctccacgtac	7	17	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	35183510	35183510	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.2551	p.A851T	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	137	0	0	89	45	33.58	-	-	-	A	35183510	G	A	35183510	3	1	569	1	0	0	0	0	1	0	0	0	7980	1203	42	4	2629	4	ITSN1	21	35183510	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	226460	35183510	12946385	1248	51204										
HLCS	0	genome.wustl.edu	37	chr21	38309042	38309042	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccctccctgagaaagataggCcatgaacttctggtacaggt	10	11	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	38309042	38309042	C	T	SNP	HLCS	ENST00000336648	human	ensembl	69_37n	-1	known	missense	c.703	p.A235T	1.000	NULL	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267	88	0	0	68	33	32.35	-	-	-	T	38309042	C	T	38309042	3	4	569	1	0	0	0	0	1	0	0	0	7264	739	26	4	1509	4	HLCS	21	38309042	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3125532	38309042	9820853	1249	51205										
DSCAM	0	genome.wustl.edu	37	chr21	41459182	41459182	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tttcatccatggagtagtcaCtgtcccactgaaggtcagga	10	10	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	41459182	41459182	C	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.3883	p.V1295L	0.999	superfamily_Fibronectin_type3,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	237	0	0	150	85	36.17	-	-	-	A	41459182	C	A	41459182	3	1	569	1	0	0	0	0	1	0	0	0	4803	565	20	4	2203	4	DSCAM	21	41459182	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3150140	41459182	6670713	1250	51206										
BACE2	0	genome.wustl.edu	37	chr21	42647649	42647649	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atggtggcgctttctcctgtGcccacccgtcttcaatctct	8	15	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	42647649	42647649	G	A	SNP	BACE2	ENST00000466122	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BACE2	HGNC	ENSG00000182240	35	0	0	27	16	37.21	-	-	-	A	42647649	G	A	42647649	1	1	569	0	1	0	0	0	0	0	0	0	1286	1334	46	4		4	BACE2	21	42647649	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1188467	42647649	5482246	1251	51207										
C21orf33	0	genome.wustl.edu	37	chr21	45553575	45553575	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccgaccccgctgtcctcaCcgcaatggcggctgtgaggg	13	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	45553575	45553575	C	T	SNP	C21orf33	ENST00000493883	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C21orf33	HGNC	ENSG00000160221	48	0	0	33	22	40	-	-	-	T	45553575	C	T	45553575	1	4	569	0	1	0	0	0	0	0	0	0	2145	522	18	4		4	C21orf33	21	45553575	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2905926	45553575	2576320	1252	51208										
C21orf2	0	genome.wustl.edu	37	chr21	45752960	45752960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggcagggtgcgcagcacgGtcatgcggtagcggtggggg	22	9	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	45752960	45752960	G	T	SNP	C21orf2	ENST00000339818	human	ensembl	69_37n	-1	known	missense	c.329	p.T110N	1.000	smart_U2A'_phosphoprotein32A_C	smart_U2A'_phosphoprotein32A_C	-	no_errors	C21orf2	HGNC	ENSG00000160226	11	0	0	15	6	28.57	-	-	-	T	45752960	G	T	45752960	3	4	569	1	0	0	0	0	1	0	0	0	2143	1261	44	4	457	4	C21orf2	21	45752960	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	199385	45752960	2376935	1253	51209										
KRTAP10-5	0	genome.wustl.edu	37	chr21	46000150	46000150	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagaggaatccttagagcaGgtgggcaggcagcacacagg	16	8	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	46000150	46000150	G	T	SNP	KRTAP10-5	ENST00000400372	human	ensembl	69_37n	-1	known	silent	c.306	p.T102	0.174	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	350	0	0	188	114	37.75	-	-	-	T	46000150	G	T	46000150	2	4	569	1	0	0	0	0	0	0	0	1	8565	987	35	4		4	KRTAP10-5	21	46000150	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	247190	46000150	2129745	1254	51210										
KRTAP10-9	0	genome.wustl.edu	37	chr21	46047347	46047347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccagcagtctagctgccagCcggcttactgcacctcctcc	9	18	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	46047347	46047347	C	T	SNP	KRTAP10-9	ENST00000397911	human	ensembl	69_37n	1	known	missense	c.259	p.P87S	0.015	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	235	0	0	130	82	38.68	-	-	-	T	46047347	C	T	46047347	3	4	569	1	0	0	0	0	1	0	0	0	8569	739	26	4	261	4	KRTAP10-9	21	46047347	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	47197	46047347	2082548	1255	51211										
ITGB2	0	genome.wustl.edu	37	chr21	46306283	46306283	+	Nonstop_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttgtcttcaccaagtgctcCtaactctcagcaaacttggg	7	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	46306283	46306283	C	A	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	nonstop	c.2310	p.*770Y	0.368	NULL	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	177	0	0	125	89	41.59	-	-	-	A	46306283	C	A	46306283	4	1	569	1	0	0	0	0	0	0	0	0	7948	692	24	4	3	4	ITGB2	21	46306283	Nonstop_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	258936	46306283	1823612	1256	51212										
COL18A1	0	genome.wustl.edu	37	chr21	46909426	46909426	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggcgtgcctgggctgccGggggcgaaggtaagcgctgt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	46909426	46909426	G	-	DEL	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	frame_shift_del	c.3195	p.A1067fs	0.001	pfam_Collagen	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	57	0	0	45	11	19.64	-	-	-	-	46909426	G	-	46909426	7	5	569	1	0	1	0	1	0	0	0	0	3705	1103	39	0	3379	0	COL18A1	21	46909426	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	603143	46909426	1220469	1257	51213										
PCBP3	0	genome.wustl.edu	37	chr21	47361682	47361682	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctaaggcccccggctctcGcactctgtacagcccacctt	8	19	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	21	47361682	47361682	G	A	SNP	PCBP3	ENST00000475402	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PCBP3	HGNC	ENSG00000183570	105	0	0	56	46	45.1	-	-	-	A	47361682	G	A	47361682	1	1	569	0	1	0	0	0	0	0	0	0	11575	1102	38	1		1	PCBP3	21	47361682	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	452256	47361682	768213	1258	51214										
CECR2	0	genome.wustl.edu	37	chr22	17978531	17978531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttctatggaacacgaatgtaCaaagaggacccggtgcaagg	12	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	17978531	17978531	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	silent	c.429	p.Y143	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	248	0	0	192	88	31.43	-	-	-	T	17978531	C	T	17978531	2	4	569	1	0	0	0	0	0	0	0	1	3235	489	17	4		4	CECR2	22	17978531	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09		17978531	33326035	1259	51215										
BID	0	genome.wustl.edu	37	chr22	18226752	18226752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagtaggtttgtgatgcactCatccctgaggctggaaccgt	12	10	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	18226752	18226752	C	T	SNP	BID	ENST00000317361	human	ensembl	69_37n	-1	known	missense	c.178	p.E60K	0.010	pfam_BID	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475	87	0	0	100	12	10.71	-	-	-	T	18226752	C	T	18226752	3	4	569	1	0	0	0	0	1	0	0	0	1435	835	29	2	563	2	BID	22	18226752	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	248221	18226752	33077814	1260	51216										
DGCR2	0	genome.wustl.edu	37	chr22	19076944	19076944	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccgtcacactgccaggggaGggggatgcactggatggtgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	19076944	19076944	G	-	DEL	DGCR2	ENST00000263196	human	ensembl	69_37n	-1	known	frame_shift_del	c.139	p.L47fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413	90	0	0	61	34	35.42	-	-	-	-	19076944	G	-	19076944	7	5	569	1	0	1	0	1	0	0	0	0	4497	1000	35	0	1549	0	DGCR2	22	19076944	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	850192	19076944	32227622	1261	51217										
TBX1	0	genome.wustl.edu	37	chr22	19751741	19751741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaccctgccacgccaggccgCgtgcactaccacccggactc	10	20	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	19751741	19751741	C	T	SNP	TBX1	ENST00000329705	human	ensembl	69_37n	1	known	silent	c.576	p.R192	0.076	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058	19	0	0	15	9	37.5	-	-	-	T	19751741	C	T	19751741	2	4	569	1	0	0	0	0	0	0	0	1	15745	755	27	1		1	TBX1	22	19751741	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	674797	19751741	31552825	1262	51218										
PPM1F	0	genome.wustl.edu	37	chr22	22287849	22287849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agggtctgtgggcagctctgGctggcgggcagcgttggtgt	20	8	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	22287849	22287849	G	A	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.661	p.P221S	0.694	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	75	0	0	49	29	37.18	-	-	-	A	22287849	G	A	22287849	3	1	569	1	0	0	0	0	1	0	0	0	12416	1203	42	4	719	4	PPM1F	22	22287849	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2536108	22287849	29016717	1263	51219										
SUSD2	0	genome.wustl.edu	37	chr22	24582000	24582000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctagcctccgccttcggagaCccacactttgtgaccttcga	8	16	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	24582000	24582000	C	G	SNP	SUSD2	ENST00000358321	human	ensembl	69_37n	1	known	missense	c.1356	p.D452E	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Complement_control_module,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994	27	0	0	21	6	22.22	-	-	-	G	24582000	C	G	24582000	3	3	569	1	0	0	0	0	1	0	0	0	15499	506	18	4	1390	4	SUSD2	22	24582000	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2294151	24582000	26722566	1264	51220										
SGSM1	0	genome.wustl.edu	37	chr22	25251362	25251362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcatccacagctcccacgtgCggcaggactcgcccaccaag	10	18	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	25251362	25251362	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.634	p.R212W	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	40	0	0	24	14	36.84	-	-	-	T	25251362	C	T	25251362	3	4	569	1	0	0	0	0	1	0	0	0	14310	759	27	1	660	1	SGSM1	22	25251362	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	669362	25251362	26053204	1265	51221										
MYO18B	0	genome.wustl.edu	37	chr22	26164407	26164407	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaagactcatccccatgacgCccccccttgcaagacctctc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	26164407	26164407	C	-	DEL	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	frame_shift_del	c.524	p.P177fs	0.000	superfamily_Ribosomal_zn-bd_dom	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	46	0	0	41	13	24.07	-	-	-	-	26164407	C	-	26164407	7	5	569	1	0	1	0	1	0	0	0	0	10138	739	26	0	534	0	MYO18B	22	26164407	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	913045	26164407	25140159	1266	51222										
SEZ6L	0	genome.wustl.edu	37	chr22	26688396	26688396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttcccgagggagatgctaGccctttgggtccttacctcc	10	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	26688396	26688396	G	A	SNP	SEZ6L	ENST00000248933	human	ensembl	69_37n	1	known	missense	c.119	p.S40N	0.004	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	53	0	0	33	20	37.74	-	-	-	A	26688396	G	A	26688396	3	1	569	1	0	0	0	0	1	0	0	0	14231	971	34	4	125	4	SEZ6L	22	26688396	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	523989	26688396	24616170	1267	51223										
TPST2	0	genome.wustl.edu	37	chr22	26932298	26932299	+	Frame_Shift_Ins	INS	-	-	GG													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggtcagggttgccatagttINSgggggggtttgcataagggt							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	26932298	26932299	-	GG	INS	TPST2	ENST00000338754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.997_996	p.N332fs	1.000:0.999	NULL	pfam_Sulfotransferase_dom	-	no_errors	TPST2	HGNC	ENSG00000128294	170	0	0	115	46	28.57	-	-	-	GG	26932299	-	GG	26932298	7	5	569	1	0	1	1	0	0	0	0	0	16524	1812	63	0	148	0	TPST2	22	26932298	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	243902	26932298	24372268	1268	51224										
C22orf31	0	genome.wustl.edu	37	chr22	29455033	29455033	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgctgtctcttttgggtttcAggaagcaacactcggccctt	10	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	29455033	29455033	A	G	SNP	C22orf31	ENST00000216071	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.038	NULL	NULL	-	no_errors	C22orf31	HGNC	ENSG00000100249	151	0	0	101	61	37.65	-	-	-	G	29455033	A	G	29455033	2	3	569	1	0	0	0	0	0	0	0	1	2163	175	7	5		5	C22orf31	22	29455033	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2522735	29455033	21849533	1269	51225										
SF3A1	0	genome.wustl.edu	37	chr22	30733834	30733834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccacagatgccattgggggcCggggcatgacgggtactgcg	17	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	30733834	30733834	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	69_37n	-1	known	missense	c.1796	p.R599Q	1.000	NULL	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin,superfamily_Surp,smart_Surp,smart_Ubiquitin,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995	88	0	0	37	27	42.19	-	-	-	T	30733834	C	T	30733834	3	4	569	1	0	0	0	0	1	0	0	0	14234	652	23	1	605	1	SF3A1	22	30733834	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1278801	30733834	20570732	1270	51226										
SMTN	0	genome.wustl.edu	37	chr22	31496909	31496909	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcagctcctggatacagaggAcatggtgcggcttcgagagc	15	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	31496909	31496909	A	G	SNP	SMTN	ENST00000333137	human	ensembl	69_37n	1	known	missense	c.2642	p.D881G	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	45	0	0	27	15	35.71	-	-	-	G	31496909	A	G	31496909	3	3	569	1	0	0	0	0	1	0	0	0	14903	275	10	5	2716	5	SMTN	22	31496909	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	763075	31496909	19807657	1271	51227										
SMTN	0	genome.wustl.edu	37	chr22	31500430	31500430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgcgacgccacgaactgcGcctgcgcggcaagaatgtct	12	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	31500430	31500430	G	A	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	missense	c.2732	p.R911H	1.000	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	86	0	0	53	25	31.65	-	-	-	A	31500430	G	A	31500430	3	1	569	1	0	0	0	0	1	0	0	0	14903	1087	38	1	2955	1	SMTN	22	31500430	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	3521	31500430	19804136	1272	51228										
PLA2G3	0	genome.wustl.edu	37	chr22	31536080	31536080	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccccaggcagtctcatgagcAcagagagcaccgtaggctgc	12	14	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	31536080	31536080	A	G	SNP	PLA2G3	ENST00000215885	human	ensembl	69_37n	-1	known	silent	c.261	p.C87	0.801	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2	-	no_errors	PLA2G3	HGNC	ENSG00000100078	41	0	0	28	11	28.21	-	-	-	G	31536080	A	G	31536080	2	3	569	1	0	0	0	0	0	0	0	1	12074	157	6	5		5	PLA2G3	22	31536080	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	35650	31536080	19768486	1273	51229										
C22orf42	0	genome.wustl.edu	37	chr22	32545534	32545534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctacttggaacactaaagcCggagaagtcctagaacctgg	11	10	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	32545534	32545534	C	T	SNP	C22orf42	ENST00000382097	human	ensembl	69_37n	-1	known	missense	c.749	p.R250Q	0.045	NULL	NULL	-	no_errors	C22orf42	HGNC	ENSG00000205856	70	0	0	64	33	34.02	-	-	-	T	32545534	C	T	32545534	3	4	569	1	0	0	0	0	1	0	0	0	2169	652	23	1	10	1	C22orf42	22	32545534	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1009454	32545534	18759032	1274	51230										
LARGE	0	genome.wustl.edu	37	chr22	33670448	33670448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggctgtgagatatttcagggCagcaaagccgtagcggcggg	17	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	33670448	33670448	C	T	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.2236	p.A746T	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	240	0	0	174	110	38.06	-	-	-	T	33670448	C	T	33670448	3	4	569	1	0	0	0	0	1	0	0	0	8681	710	25	4	38	4	LARGE	22	33670448	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1124914	33670448	17634118	1275	51231										
MYH9	0	genome.wustl.edu	37	chr22	36680450	36680450	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccccaccagcgcccacaccTggtccttgtactgctcggcg	10	19	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	36680450	36680450	T	G	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.5591	p.Q1864P	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	186	0	0	103	70	40.46	-	-	-	G	36680450	T	G	36680450	3	3	569	1	0	0	0	0	1	0	0	0	10114	1594	55	5	303	5	MYH9	22	36680450	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	3010002	36680450	14624116	1276	51232										
MYH9	0	genome.wustl.edu	37	chr22	36698708	36698708	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcggtaagctgctgctgcCgcttggcaaatgctctgtgt	14	10	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	36698708	36698708	C	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.2405	p.R802L	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	93	0	0	54	43	44.33	-	-	-	A	36698708	C	A	36698708	3	1	569	1	0	0	0	0	1	0	0	0	10114	652	23	3	3565	3	MYH9	22	36698708	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	18258	36698708	14605858	1277	51233										
GGA1	0	genome.wustl.edu	37	chr22	38028688	38028688	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgggggatgtggaccagttCcccccacctgaaacctgggg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	38028688	38028688	C	-	DEL	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	frame_shift_del	c.1890	p.P632fs	1.000	superfamily_Coatomer/clathrin_app_Ig-like	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	144	0	0	73	41	35.65	-	-	-	-	38028688	C	-	38028688	7	5	569	1	0	1	0	1	0	0	0	0	6404	854	30	0	2022	0	GGA1	22	38028688	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1329980	38028688	13275878	1278	51234										
EIF3L	0	genome.wustl.edu	37	chr22	38282787	38282787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacaggacatgatccacatcGcggacaccaaggtcgccagg	11	14	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	38282787	38282787	G	A	SNP	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	missense	c.1720	p.A574T	1.000	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	167	0	0	126	91	41.74	-	-	-	A	38282787	G	A	38282787	3	1	569	1	0	0	0	0	1	0	0	0	5059	1087	38	1	1637	1	EIF3L	22	38282787	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	254099	38282787	13021779	1279	51235										
SOX10	0	genome.wustl.edu	37	chr22	38369999	38369999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcctgggtgcccattgggcgGcaggtactggtccaactcag	15	12	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	38369999	38369999	G	A	SNP	SOX10	ENST00000360880	human	ensembl	69_37n	-1	known	missense	c.904	p.P302S	1.000	NULL	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX10	HGNC	ENSG00000100146	88	0	0	80	31	27.93	-	-	-	A	38369999	G	A	38369999	3	1	569	1	0	0	0	0	1	0	0	0	15030	1203	42	4	500	4	SOX10	22	38369999	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	87212	38369999	12934567	1280	51236										
EP300	0	genome.wustl.edu	37	chr22	41566525	41566525	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agcgactgcaggaatggtacAaaaaaatgcttgacaaggct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	41566525	41566525	A	-	DEL	EP300	ENST00000263253	human	ensembl	69_37n	1	known	frame_shift_del	c.4402	p.M1470fs	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	243	0	0	158	82	34.02	-	-	-	-	41566525	A	-	41566525	7	5	569	1	0	1	0	1	0	0	0	0	5185	131	5	0	4508	0	EP300	22	41566525	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	3196526	41566525	9738041	1281	51237										
EP300	0	genome.wustl.edu	37	chr22	41573569	41573569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgcaaatttttcaaaggccaAtccaacaccagatgcccccg	6	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	41573569	41573569	A	G	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.5854	p.I1952V	0.865	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	117	0	0	111	64	36.57	-	-	-	G	41573569	A	G	41573569	3	3	569	1	0	0	0	0	1	0	0	0	5185	101	4	5	5976	5	EP300	22	41573569	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	7044	41573569	9730997	1282	51238										
ACO2	0	genome.wustl.edu	37	chr22	41903928	41903928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggccatgcaggatgcgacgGcccagatggccatgctccag	14	13	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	41903928	41903928	G	T	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	missense	c.307	p.A103S	0.999	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	47	0	0	31	25	44.64	-	-	-	T	41903928	G	T	41903928	3	4	569	1	0	0	0	0	1	0	0	0	147	1203	42	4	317	4	ACO2	22	41903928	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	330359	41903928	9400638	1283	51239										
TCF20	0	genome.wustl.edu	37	chr22	42564716	42564716	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttcgcggtcttgttctgcaaGggggggagagggcacggaag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	42564716	42564716	G	-	DEL	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	frame_shift_del	c.5826	p.L1943fs	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	174	0	0	135	61	30.5	-	-	-	-	42564716	G	-	42564716	7	5	569	1	0	1	0	1	0	0	0	0	15785	987	35	0	82	0	TCF20	22	42564716	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	660788	42564716	8739850	1284	51240										
ATXN10	0	genome.wustl.edu	37	chr22	46202974	46202974	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caaaacaagtcccttgcctcAtgttcattcagtatgtagct	6	11	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	46202974	46202974	A	C	SNP	ATXN10	ENST00000451241	human	ensembl	69_37n	1	putative	missense	c.407	p.H136P	0.000	NULL	pfam_Ataxin-10_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN10	HGNC	ENSG00000130638	176	0	0	101	80	44.2	-	-	-	C	46202974	A	C	46202974	3	2	569	1	0	0	0	0	1	0	0	0	1214	232	8	5		5	ATXN10	22	46202974	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3638258	46202974	5101592	1285	51241										
WNT7B	0	genome.wustl.edu	37	chr22	46345958	46345958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctggcagatggcacgctgcCgcggggctaggccaggaatc	16	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	46345958	46345958	C	T	SNP	WNT7B	ENST00000339464	human	ensembl	69_37n	-1	known	missense	c.140	p.R47Q	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7B	HGNC	ENSG00000188064	50	0	0	29	38	56.72	-	-	-	T	46345958	C	T	46345958	3	4	569	1	0	0	0	0	1	0	0	0	17492	652	23	1	921	1	WNT7B	22	46345958	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	142984	46345958	4958608	1286	51242										
PKDREJ	0	genome.wustl.edu	37	chr22	46654179	46654179	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttggtacatcctcgtgcctcGgattcggacgatctggtcat	11	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	46654179	46654179	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	nonsense	c.5041	p.R1681*	0.004	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	522	0	0	323	224	40.95	-	-	-	A	46654179	G	A	46654179	4	1	569	1	0	0	0	0	0	1	0	0	12044	1124	39	1	1724	1	PKDREJ	22	46654179	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	308221	46654179	4650387	1287	51243										
PLXNB2	0	genome.wustl.edu	37	chr22	50716373	50716373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcgaagaagtacttgactgCaggtggcaccgcgtgcccag	14	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	50716373	50716373	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.4957	p.A1653T	0.998	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	55	0	0	35	19	35.19	-	-	-	T	50716373	C	T	50716373	3	4	569	1	0	0	0	0	1	0	0	0	12198	710	25	4	583	4	PLXNB2	22	50716373	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4062194	50716373	588193	1288	51244										
PLXNB2	0	genome.wustl.edu	37	chr22	50728157	50728157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaccctgccagagccaggcGcagccacggaggcggccagg	16	16	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	50728157	50728157	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.857	p.A286V	0.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	57	0	0	37	13	26	-	-	-	A	50728157	G	A	50728157	3	1	569	1	0	0	0	0	1	0	0	0	12198	1087	38	1	4799	1	PLXNB2	22	50728157	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	11784	50728157	576409	1289	51245										
SBF1	0	genome.wustl.edu	37	chr22	50900047	50900047	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgctggtcccccagcactgCcccccgcgccctcctcacgc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	22	50900047	50900047	C	-	DEL	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	frame_shift_del	c.2744	p.G915fs	0.930	pfam_GRAM,smart_GRAM	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	15	0	0	13	6	31.58	-	-	-	-	50900047	C	-	50900047	7	5	569	1	0	1	0	1	0	0	0	0	13945	739	26	0	3017	0	SBF1	22	50900047	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	171890	50900047	404519	1290	51246										
ASMTL	0	genome.wustl.edu	37	chrX	1536899	1536900	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atctgcactgcctgcggtccINSggggggttggaagtgggcgg							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	1536899	1536900	-	G	INS	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1489_1488	p.G496fs	0.038:0.003	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	464	0	0	328	141	30.06	-	-	-	G	1536900	-	G	1536899	7	5	569	1	0	1	1	0	0	0	0	0	1050	661	23	0	388	0	ASMTL	23	1536899	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09		1536899	153733661	1291	51247										
MXRA5	0	genome.wustl.edu	37	chrX	3228563	3228563	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgcggcagagcagttgaggcTgatggtgtggcccgccatgg	18	10	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	3228563	3228563	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.7681	p.S2561G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	75	0	0	69	21	23.33	-	-	-	C	3228563	T	C	3228563	3	2	569	1	0	0	0	0	1	0	0	0	10075	1580	55	5	809	5	MXRA5	23	3228563	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1691664	3228563	152041997	1292	51248										
SHROOM2	0	genome.wustl.edu	37	chrX	9863012	9863012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttacggccctggcccaggCtcagcctcgtggtgaccgga	13	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	9863012	9863012	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.1064	p.A355V	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	41	0	0	15	12	44.44	-	-	-	T	9863012	C	T	9863012	3	4	569	1	0	0	0	0	1	0	0	0	14383	797	28	4	1078	4	SHROOM2	23	9863012	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	6634449	9863012	145407548	1293	51249										
SHROOM2	0	genome.wustl.edu	37	chrX	9900561	9900561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggagatacagggccacagacGgcgcacctgctgacgccccc	13	16	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	9900561	9900561	G	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.3238	p.G1080C	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	47	0	0	40	22	35.48	-	-	-	T	9900561	G	T	9900561	3	4	569	1	0	0	0	0	1	0	0	0	14383	1116	39	3	3260	3	SHROOM2	23	9900561	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	37549	9900561	145369999	1294	51250										
WWC3	0	genome.wustl.edu	37	chrX	10106783	10106783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctggctgagctcatggcccGcacctccctggacttggagc	12	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	10106783	10106783	G	A	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.2891	p.R964H	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	40	0	0	24	14	36.84	-	-	-	A	10106783	G	A	10106783	3	1	569	1	0	0	0	0	1	0	0	0	17510	1087	38	1	2969	1	WWC3	23	10106783	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	206222	10106783	145163777	1295	51251										
ARHGAP6	0	genome.wustl.edu	37	chrX	11160421	11160421	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccccagatatcgaaaggcTcctctgacagatctagggaa	9	11	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	11160421	11160421	T	A	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	missense	c.2189	p.E730V	0.996	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	307	0	0	219	129	36.96	-	-	-	A	11160421	T	A	11160421	3	1	569	1	0	0	0	0	1	0	0	0	889	1551	54	5	743	5	ARHGAP6	23	11160421	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	1053638	11160421	144110139	1296	51252										
ARHGAP6	0	genome.wustl.edu	37	chrX	11308542	11308542	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtggggtcaaagttacgatgTgtatcggaattcatcggtgg	15	5	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	11308542	11308542	T	C	SNP	ARHGAP6	ENST00000380732	human	ensembl	69_37n	-1	known	silent	c.645	p.T215	0.001	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	300	0	0	221	143	39.07	-	-	-	C	11308542	T	C	11308542	2	2	569	1	0	0	0	0	0	0	0	1	889	1711	59	5		5	ARHGAP6	23	11308542	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	148121	11308542	143962018	1297	51253										
FANCB	0	genome.wustl.edu	37	chrX	14863040	14863040	+	Frame_Shift_Del	DEL	A	A	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttgaaagatcttctagacttAaaaaaactctgccacacaca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	14863040	14863040	A	-	DEL	FANCB	ENST00000324138	human	ensembl	69_37n	-1	known	frame_shift_del	c.1865	p.L622fs	0.328	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544	132	0	0	100	56	34.57	-	-	-	-	14863040	A	-	14863040	7	5	569	1	0	1	0	1	0	0	0	0	5709	372	13	0	726	0	FANCB	23	14863040	Frame_Shift_Del	DEL	A	TCGA-BH-A18G-01A-11D-A12B-09	3554498	14863040	140407520	1298	51254										
MBTPS2	0	genome.wustl.edu	37	chrX	21900733	21900733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tggcagtgtacttttggctgCcaatgtgaccctgggactct	12	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	21900733	21900733	C	T	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	missense	c.1520	p.A507V	1.000	pfam_Peptidase_M50	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	446	1	0.22	365	214	36.9	-	-	-	T	21900733	C	T	21900733	3	4	569	1	0	0	0	0	1	0	0	0	9433	739	26	4	1562	4	MBTPS2	23	21900733	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7037693	21900733	133369827	1299	51255										
FAM47A	0	genome.wustl.edu	37	chrX	34148936	34148936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcgagtggagactggacctcCgacgtgtcttgggatgttcc	15	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	34148936	34148936	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1460	p.R487Q	0.330	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	118	0	0	83	60	41.96	-	-	-	T	34148936	C	T	34148936	3	4	569	1	0	0	0	0	1	0	0	0	5615	652	23	1	919	1	FAM47A	23	34148936	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	12248203	34148936	121121624	1300	51256										
BCOR	0	genome.wustl.edu	37	chrX	39913235	39913235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tataggcatcgtcatcatcaTcctggtcttctggtcctggg	10	11	5	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	39913235	39913235	T	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.4880	p.D1627G	0.364	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	195	0	0	163	88	35.06	-	-	-	C	39913235	T	C	39913235	3	2	569	1	0	0	0	0	1	0	0	0	1390	1435	50	5	395	5	BCOR	23	39913235	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	5764299	39913235	115357325	1301	51257										
USP9X	0	genome.wustl.edu	37	chrX	41055854	41055855	+	Frame_Shift_Del	DEL	AG	AG	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tctgtttccagagcacagcaAgagagagagctaaacactca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	41055854	41055855	AG	-	DEL	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	frame_shift_del	c.4096_4097	p.R1368fs	0.999:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	177	0	0	98	67	40.36	-	-	-	-	41055855	AG	-	41055854	7	5	569	1	0	1	0	1	0	0	0	0	17187	64	3	0	4202	0	USP9X	23	41055854	Frame_Shift_Del	DEL	AG	TCGA-BH-A18G-01A-11D-A12B-09	1142619	41055854	114214706	1302	51258										
GPR34	0	genome.wustl.edu	37	chrX	41555260	41555260	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caagtggacactaggtgtgaTtctgtgcaaggttgtgggaa	15	5	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	41555260	41555260	T	A	SNP	GPR34	ENST00000378138	human	ensembl	69_37n	1	known	missense	c.374	p.I125N	0.011	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR34	HGNC	ENSG00000171659	343	0	0	223	123	35.55	-	-	-	A	41555260	T	A	41555260	3	1	569	1	0	0	0	0	1	0	0	0	6739	1493	52	5	376	5	GPR34	23	41555260	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	499406	41555260	113715300	1303	51259										
KDM6A	0	genome.wustl.edu	37	chrX	44942009	44942009	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aaaccataaagtttgggaccAatattgacctatctgatgac	7	8	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	44942009	44942009	A	G	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.3280	p.N1094D	1.000	NULL	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	519	0	0	327	197	37.6	-	-	-	G	44942009	A	G	44942009	3	3	569	1	0	0	0	0	1	0	0	0	8190	130	5	5	3345	5	KDM6A	23	44942009	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3386749	44942009	110328551	1304	51260										
KDM6A	0	genome.wustl.edu	37	chrX	44949997	44949997	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ataaattggcagtggaacggTacgaatggaacaaattgcaa	11	5	0	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	44949997	44949997	T	C	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.3787	p.Y1263H	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	461	0	0	349	169	32.38	-	-	-	C	44949997	T	C	44949997	3	2	569	1	0	0	0	0	1	0	0	0	8190	1638	57	5	3868	5	KDM6A	23	44949997	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	7988	44949997	110320563	1305	51261										
UBA1	0	genome.wustl.edu	37	chrX	47070300	47070300	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgctgtccacacccgctcacCtttgatgtcaacaatgtaag	7	14	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	47070300	47070300	C	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.2259	p.T753	0.964	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	404	0	0	248	124	33.33	-	-	-	A	47070300	C	A	47070300	2	1	569	1	0	0	0	0	0	0	0	1	16924	668	24	4		4	UBA1	23	47070300	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	2120303	47070300	108200260	1306	51262										
HDAC6	0	genome.wustl.edu	37	chrX	48678572	48678572	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gctgcacggggggatccgctGgggggctgccaggtgtcacc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	48678572	48678572	G	-	DEL	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	frame_shift_del	c.2289	p.G765fs	0.969	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	176	0	0	139	66	31.28	-	-	-	-	48678572	G	-	48678572	7	5	569	1	0	1	0	1	0	0	0	0	7062	1335	47	0	2333	0	HDAC6	23	48678572	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	1608272	48678572	106591988	1307	51263										
KCND1	0	genome.wustl.edu	37	chrX	48825564	48825564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagtccacactcacccaagcGtggtcatggtgacaatggta	11	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	48825564	48825564	G	A	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.1115	p.T372M	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	177	0	0	115	65	36.11	-	-	-	A	48825564	G	A	48825564	3	1	569	1	0	0	0	0	1	0	0	0	8072	1145	40	1	852	1	KCND1	23	48825564	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	146992	48825564	106444996	1308	51264										
CCDC120	0	genome.wustl.edu	37	chrX	48921410	48921410	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aggagctgactggccagctgCcccctgagtgcccactagag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	48921410	48921410	C	-	DEL	CCDC120	ENST00000422185	human	ensembl	69_37n	1	known	frame_shift_del	c.202	p.P69fs	1.000	pfam_DUF3338	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	34	0	0	24	12	30.77	-	-	-	-	48921410	C	-	48921410	7	5	569	1	0	1	0	1	0	0	0	0	2781	739	26	0	212	0	CCDC120	23	48921410	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	95846	48921410	106349150	1309	51265										
WDR45	0	genome.wustl.edu	37	chrX	48933619	48933620	+	Frame_Shift_Ins	INS	-	-	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagccctagggtgtgaagatINSggggggtggggtgggcggct							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	48933619	48933620	-	G	INS	WDR45	ENST00000322995	human	ensembl	69_37n	-1	known	frame_shift_ins	c.455_454	p.H152fs	0.008:0.003	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998	138	0	0	80	22	21.57	-	-	-	G	48933620	-	G	48933619	7	5	569	1	0	1	1	0	0	0	0	0	17394	1479	51	0		0	WDR45	23	48933619	Frame_Shift_Ins	INS	-	TCGA-BH-A18G-01A-11D-A12B-09	12209	48933619	106336941	1310	51266										
MAGIX	0	genome.wustl.edu	37	chrX	49021636	49021636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccagctccacctggttattCgtcggcctctggagacccac	9	17	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	49021636	49021636	C	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	1	known	missense	c.616	p.R206C	0.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	41	0	0	29	19	38.78	-	-	-	T	49021636	C	T	49021636	3	4	569	1	0	0	0	0	1	0	0	0	9264	884	31	1	674	1	MAGIX	23	49021636	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	88017	49021636	106248924	1311	51267										
PLP2	0	genome.wustl.edu	37	chrX	49029797	49029797	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acctccattgttgtccttgtTgagagaggaaaccactccaa	8	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	49029797	49029797	T	C	SNP	PLP2	ENST00000376327	human	ensembl	69_37n	1	known	silent	c.312	p.V104	0.426	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	PLP2	HGNC	ENSG00000102007	377	0	0	226	138	37.91	-	-	-	C	49029797	T	C	49029797	2	2	569	1	0	0	0	0	0	0	0	1	12179	1799	63	5		5	PLP2	23	49029797	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	8161	49029797	106240763	1312	51268										
PRICKLE3	0	genome.wustl.edu	37	chrX	49034493	49034493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgatccatgtgccagtggcgGccctcagcctccgtgcactc	11	16	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	49034493	49034493	G	A	SNP	PRICKLE3	ENST00000453382	human	ensembl	69_37n	-1	known	missense	c.841	p.P281S	0.995	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRICKLE3	HGNC	ENSG00000012211	83	0	0	44	36	43.9	-	-	-	A	49034493	G	A	49034493	3	1	569	1	0	0	0	0	1	0	0	0	12569	1190	42	4	1055	4	PRICKLE3	23	49034493	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4696	49034493	106236067	1313	51269										
CACNA1F	0	genome.wustl.edu	37	chrX	49088141	49088141	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cccctgccttccaggatgctTccactccacgatgctgatgc	8	17	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	49088141	49088141	T	C	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.274	p.K92E	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	165	1	0.6	94	56	37.33	-	-	-	C	49088141	T	C	49088141	3	2	569	1	0	0	0	0	1	0	0	0	2568	1797	62	5	5847	5	CACNA1F	23	49088141	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	53648	49088141	106182419	1314	51270										
GSPT2	0	genome.wustl.edu	37	chrX	51488002	51488002	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccaaacttcaacagatcaaTtgatggaccaataagactgc	7	10	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	51488002	51488002	T	C	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	missense	c.1280	p.I427T	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	253	0	0	141	97	40.76	-	-	-	C	51488002	T	C	51488002	3	2	569	1	0	0	0	0	1	0	0	0	6878	1493	52	5	1282	5	GSPT2	23	51488002	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2399861	51488002	103782558	1315	51271										
TSPYL2	0	genome.wustl.edu	37	chrX	53114014	53114014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aacccctacttcacaaacatGgtgattgtcaaggagttcca	7	11	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53114014	53114014	G	C	SNP	TSPYL2	ENST00000375442	human	ensembl	69_37n	1	known	missense	c.963	p.M321I	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	285	0	0	176	105	37.37	-	-	-	C	53114014	G	C	53114014	3	2	569	1	0	0	0	0	1	0	0	0	16756	1348	47	4	973	4	TSPYL2	23	53114014	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1626012	53114014	102156546	1316	51272										
KDM5C	0	genome.wustl.edu	37	chrX	53223476	53223476	+	Missense_Mutation	SNP	C	C	G													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cacatcttcagaggccagagCctgcctggcgcggccttgcc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53223476	53223476	C	G	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.3883	p.A1295P	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	42	0	0	20	26	56.52	-	-	-	G	53223476	C	G	53223476	3	3	569	1	0	0	0	0	1	0	0	0	8188	739	26	4	913	4	KDM5C	23	53223476	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	109462	53223476	102047084	1317	51273	425	2								
KDM5C	0	genome.wustl.edu	37	chrX	53223478	53223478	+	Missense_Mutation	SNP	T	T	A													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catcttcagaggccagagccTgcctggcgcggccttgccag							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53223478	53223478	T	A	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.3881	p.Q1294L	0.996	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	42	0	0	21	25	54.35	-	-	-	A	53223478	T	A	53223478	3	1	569	1	0	0	0	0	1	0	0	0	8188	1580	55	5	915	5	KDM5C	23	53223478	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	2	53223478	102047082	1318	51274	425	2								
SMC1A	0	genome.wustl.edu	37	chrX	53409065	53409065	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttccaccaaaccatcaccttCgcagatctctgtgtatcctt	4	15	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53409065	53409065	C	T	SNP	SMC1A	ENST00000469129	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMC1A	HGNC	ENSG00000072501	33	0	0	15	10	40	-	-	-	T	53409065	C	T	53409065	1	4	569	0	1	0	0	0	0	0	0	0	14870	899	31	1		1	SMC1A	23	53409065	RNA	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	185587	53409065	101861495	1319	51275										
SMC1A	0	genome.wustl.edu	37	chrX	53409442	53409442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctacctgggcactgctattGcgggacagggccttatagat	12	11	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53409442	53409442	G	A	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	silent	c.3270	p.R1090	0.947	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	153	0	0	112	79	41.36	-	-	-	A	53409442	G	A	53409442	2	1	569	1	0	0	0	0	0	0	0	1	14870	1306	46	4		4	SMC1A	23	53409442	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	377	53409442	101861118	1320	51276										
HUWE1	0	genome.wustl.edu	37	chrX	53616683	53616683	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcatcttgttccaacgggtCagcatcctggaacttctcta	7	13	4	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	53616683	53616683	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.4285	p.D1429N	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	576	0	0	364	222	37.82	-	-	-	T	53616683	C	T	53616683	3	4	569	1	0	0	0	0	1	0	0	0	7515	826	29	2	9035	2	HUWE1	23	53616683	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	207241	53616683	101653877	1321	51277										
FGD1	0	genome.wustl.edu	37	chrX	54472832	54472832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccaatgaggggcaggctgcGctgggctttcacatcctggc	15	12	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	54472832	54472832	G	A	SNP	FGD1	ENST00000375135	human	ensembl	69_37n	-1	known	missense	c.2596	p.R866C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302	77	0	0	45	33	41.77	-	-	-	A	54472832	G	A	54472832	3	1	569	1	0	0	0	0	1	0	0	0	5878	1087	38	1	293	1	FGD1	23	54472832	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	856149	54472832	100797728	1322	51278										
TRO	0	genome.wustl.edu	37	chrX	54948666	54948666	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcaggctcacctgttactcGgcctcccagaaagatggata	9	13	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	54948666	54948666	G	A	SNP	TRO	ENST00000474933	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRO	HGNC	ENSG00000067445	578	2	0.34	371	250	40.26	-	-	-	A	54948666	G	A	54948666	1	1	569	0	1	0	0	0	0	0	0	0	16670	1131	39	1		1	TRO	23	54948666	RNA	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	475834	54948666	100321894	1323	51279										
MTMR8	0	genome.wustl.edu	37	chrX	63579391	63579391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tactcacataacgatccaccAatttcacgttttctacctgt	3	13	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	63579391	63579391	A	G	SNP	MTMR8	ENST00000374852	human	ensembl	69_37n	-1	known	missense	c.41	p.L14S	0.977	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043	345	2	0.58	217	142	39.55	-	-	-	G	63579391	A	G	63579391	3	3	569	1	0	0	0	0	1	0	0	0	10021	131	5	5	2125	5	MTMR8	23	63579391	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	8630725	63579391	91691169	1324	51280										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722831	64722831	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tatcccttgagtaacagcctCatgcaaccatgttatgagcc	7	12	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	64722831	64722831	C	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	silent	c.2253	p.L751	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	216	0	0	158	96	37.8	-	-	-	T	64722831	C	T	64722831	2	4	569	1	0	0	0	0	0	0	0	1	17658	813	29	2		2	ZC3H12B	23	64722831	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	1143440	64722831	90547729	1325	51281										
HEPH	0	genome.wustl.edu	37	chrX	65409533	65409533	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ttttcttttgcagcaatcaaTggctttgtttttgggaattt	8	5	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	65409533	65409533	T	C	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	silent	c.978	p.N326	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	647	2	0.31	417	198	32.2	-	-	-	C	65409533	T	C	65409533	2	2	569	1	0	0	0	0	0	0	0	1	7105	1461	51	5		5	HEPH	23	65409533	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	686702	65409533	89861027	1326	51282										
ARR3	0	genome.wustl.edu	37	chrX	69495968	69495968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	atgtgcctttcgctatggccGtgatgacttggaagtgattg	13	7	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	69495968	69495968	G	A	SNP	ARR3	ENST00000307959	human	ensembl	69_37n	1	known	missense	c.182	p.R61H	0.998	pfam_Arrestin-like_N,superfamily_Ig_E-set,prints_Arrestin	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500	249	1	0.4	179	78	30.35	-	-	-	A	69495968	G	A	69495968	3	1	569	1	0	0	0	0	1	0	0	0	983	1145	40	1	200	1	ARR3	23	69495968	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	4086435	69495968	85774592	1327	51283										
NLGN3	0	genome.wustl.edu	37	chrX	70375090	70375090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggacagtggtgctaaacccGtcatggtctacatccacgga	12	11	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	70375090	70375090	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.604	p.V202I	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	269	2	0.74	167	107	39.05	-	-	-	A	70375090	G	A	70375090	3	1	569	1	0	0	0	0	1	0	0	0	10535	1145	40	1	618	1	NLGN3	23	70375090	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	879122	70375090	84895470	1328	51284										
ZMYM3	0	genome.wustl.edu	37	chrX	70472854	70472854	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gagggggctttatagagcagCccccccagccccagcaactc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	70472854	70472854	C	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.252	p.L85fs	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	38	0	0	21	7	25	-	-	-	-	70472854	C	-	70472854	7	5	569	1	0	1	0	1	0	0	0	0	17797	726	26	0	3974	0	ZMYM3	23	70472854	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	97764	70472854	84797706	1329	51285										
NHSL2	0	genome.wustl.edu	37	chrX	71359752	71359752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	acccaacctggatctgtctgGgatgagtatctccatccgaa	9	12	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	71359752	71359752	G	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.2354	p.G785V	1.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	415	0	0	306	129	29.59	-	-	-	T	71359752	G	T	71359752	3	4	569	1	0	0	0	0	1	0	0	0	10484	1232	43	4	2376	4	NHSL2	23	71359752	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	886898	71359752	83910808	1330	51286										
ATRX	0	genome.wustl.edu	37	chrX	76939856	76939858	+	In_Frame_Del	DEL	TCT	TCT	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cttttcactgtcaacttttaTcttcttcttattttgctgca							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	76939856	76939858	TCT	-	DEL	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	in_frame_del	c.892_890	p.K297in_frame_del	0.998:0.996:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	416	0	0	341	132	27.91	-	-	-	-	76939858	TCT	-	76939856	7	5	569	1	0	1	0	1	0	0	0	0	1212	1435	50	0	6694	0	ATRX	23	76939856	In_Frame_Del	DEL	TCT	TCGA-BH-A18G-01A-11D-A12B-09	5580104	76939856	78330704	1331	51287										
ATP7A	0	genome.wustl.edu	37	chrX	77245410	77245410	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actaacctctccagaaacgtTgagaggagcaatagaagaca	9	9	1	4			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	77245410	77245410	T	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.1292	p.L431S	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	135	0	0	103	61	37.2	-	-	-	C	77245410	T	C	77245410	3	2	569	1	0	0	0	0	1	0	0	0	1194	1821	63	5	1302	5	ATP7A	23	77245410	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	305554	77245410	78025150	1332	51288										
CYSLTR1	0	genome.wustl.edu	37	chrX	77528736	77528736	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gggctcaaagcacttggtatTatttttctcatctttttgtg	8	7	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	77528736	77528736	T	C	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	missense	c.508	p.N170D	0.886	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	171	0	0	116	102	46.79	-	-	-	C	77528736	T	C	77528736	3	2	569	1	0	0	0	0	1	0	0	0	4232	1754	61	5	509	5	CYSLTR1	23	77528736	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	283326	77528736	77741824	1333	51289										
CYSLTR1	0	genome.wustl.edu	37	chrX	77529168	77529168	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	catagagtacaaggtggaatAcacttgattgcggaagtcat	11	6	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	77529168	77529168	A	G	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	missense	c.76	p.Y26H	0.999	prints_Cyst_leuk_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	309	0	0	207	143	40.86	-	-	-	G	77529168	A	G	77529168	3	3	569	1	0	0	0	0	1	0	0	0	4232	391	14	5	941	5	CYSLTR1	23	77529168	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	432	77529168	77741392	1334	51290										
POU3F4	0	genome.wustl.edu	37	chrX	82763664	82763664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcaccgcacactaaccaccCcaacgcctggggggccagcc	9	20	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	82763664	82763664	C	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	missense	c.332	p.P111L	0.998	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	53	0	0	34	15	30.61	-	-	-	T	82763664	C	T	82763664	3	4	569	1	0	0	0	0	1	0	0	0	12350	623	22	4	334	4	POU3F4	23	82763664	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	5234496	82763664	72506896	1335	51291										
POU3F4	0	genome.wustl.edu	37	chrX	82764178	82764178	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggccgcaagcgcaagaagcgGacctccatcgaggtgagtgt	15	11	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	82764178	82764178	G	A	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	silent	c.846	p.R282	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	75	0	0	48	26	35.14	-	-	-	A	82764178	G	A	82764178	2	1	569	1	0	0	0	0	0	0	0	1	12350	1161	41	2		2	POU3F4	23	82764178	Silent	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	514	82764178	72506382	1336	51292										
PCDH11X	0	genome.wustl.edu	37	chrX	91873397	91873397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccagctcttcgcaagcacagGcctctgctctatgccacagc	8	17	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	91873397	91873397	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3502	p.A1168T	0.001	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	468	1	0.21	317	187	36.74	-	-	-	A	91873397	G	A	91873397	3	1	569	1	0	0	0	0	1	0	0	0	11581	1203	42	4	3650	4	PCDH11X	23	91873397	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9109219	91873397	63397163	1337	51293										
PCDH19	0	genome.wustl.edu	37	chrX	99662505	99662505	+	Frame_Shift_Del	DEL	G	G	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaaggcgatcacgtagcccGggggggcgctctcgctgacc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	99662505	99662505	G	-	DEL	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_del	c.1091	p.P364fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	90	0	0	52	23	30.26	-	-	-	-	99662505	G	-	99662505	7	5	569	1	0	1	0	1	0	0	0	0	11587	1116	39	0	2379	0	PCDH19	23	99662505	Frame_Shift_Del	DEL	G	TCGA-BH-A18G-01A-11D-A12B-09	7789108	99662505	55608055	1338	51294										
COL4A5	0	genome.wustl.edu	37	chrX	107935990	107935990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctttctagggacggctggcaGctgccttcgtcgctttagta	12	11	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	107935990	107935990	G	A	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.4541	p.S1514N	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	334	1	0.3	212	138	39.43	-	-	-	A	107935990	G	A	107935990	3	1	569	1	0	0	0	0	1	0	0	0	3724	971	34	4	4724	4	COL4A5	23	107935990	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	8273485	107935990	47334570	1339	51295										
DCX	0	genome.wustl.edu	37	chrX	110574209	110574209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tcttggctgaagtcttctgaGgtgttggggatgcctttggg	16	6	3	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	110574209	110574209	G	A	SNP	DCX	ENST00000338081	human	ensembl	69_37n	-1	known	missense	c.1112	p.P371L	0.987	pirsf_Doublecortin_chordata	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279	713	1	0.14	445	245	35.51	-	-	-	A	110574209	G	A	110574209	3	1	569	1	0	0	0	0	1	0	0	0	4349	1000	35	4	240	4	DCX	23	110574209	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2638219	110574209	44696351	1340	51296										
AMOT	0	genome.wustl.edu	37	chrX	112048215	112048215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccttggcctgggcattactcAgggcctgatctcggatttcg	12	12	2	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	112048215	112048215	A	G	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1736	p.L579P	0.949	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	385	0	0	277	182	39.65	-	-	-	G	112048215	A	G	112048215	3	3	569	1	0	0	0	0	1	0	0	0	582	188	7	5	1546	5	AMOT	23	112048215	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1474006	112048215	43222345	1341	51297										
PLS3	0	genome.wustl.edu	37	chrX	114871268	114871268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcgggctggcaaaaaattaAcaactttagtgctgacatca	8	9	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	114871268	114871268	A	G	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.869	p.N290S	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	230	0	0	168	117	41.05	-	-	-	G	114871268	A	G	114871268	3	3	569	1	0	0	0	0	1	0	0	0	12182	43	2	5	895	5	PLS3	23	114871268	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	2823053	114871268	40399292	1342	51298										
AGTR2	0	genome.wustl.edu	37	chrX	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctgaacatgtttgcaagcaTtttttttatcacctgcatga							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	115303928	115303928	T	-	DEL	AGTR2	ENST00000371906	human	ensembl	69_37n	1	known	frame_shift_del	c.395	p.F134fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_P2_purnocptor,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor,prints_Chemokine_rcpt	-	no_errors	AGTR2	HGNC	ENSG00000180772	497	0	0	389	191	32.71	-	-	-	-	115303928	T	-	115303928	7	5	569	1	0	1	0	1	0	0	0	0	402	1493	52	0	397	0	AGTR2	23	115303928	Frame_Shift_Del	DEL	T	TCGA-BH-A18G-01A-11D-A12B-09	432660	115303928	39966632	1343	51299										
AKAP14	0	genome.wustl.edu	37	chrX	119037309	119037309	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gaattgactcaagtagctctAgctctggttgaggatgtcat	11	7	4	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	119037309	119037309	A	G	SNP	AKAP14	ENST00000371431	human	ensembl	69_37n	1	known	silent	c.123	p.L41	0.000	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471	380	0	0	220	178	44.72	-	-	-	G	119037309	A	G	119037309	2	3	569	1	0	0	0	0	0	0	0	1	450	407	15	5		5	AKAP14	23	119037309	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	3733381	119037309	36233251	1344	51300										
RHOXF1	0	genome.wustl.edu	37	chrX	119249600	119249600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cgccatcgcggttcatgccgTtctcgtggttcacaccgccc	10	17	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	119249600	119249600	T	C	SNP	RHOXF1	ENST00000217999	human	ensembl	69_37n	-1	known	missense	c.173	p.N58S	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	RHOXF1	HGNC	ENSG00000101883	43	0	0	34	17	33.33	-	-	-	C	119249600	T	C	119249600	3	2	569	1	0	0	0	0	1	0	0	0	13431	1725	60	5	393	5	RHOXF1	23	119249600	Missense_Mutation	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	212291	119249600	36020960	1345	51301										
FAM70A	0	genome.wustl.edu	37	chrX	119410840	119410840	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agagcaggtggtagaggtggAtgatatcttggcaactgctg	16	5	1	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	119410840	119410840	A	T	SNP	FAM70A	ENST00000309720	human	ensembl	69_37n	-1	known	missense	c.647	p.I216N	1.000	NULL	NULL	-	no_errors	FAM70A	HGNC	ENSG00000125355	312	0	0	209	115	35.06	-	-	-	T	119410840	A	T	119410840	3	4	569	1	0	0	0	0	1	0	0	0	5650	333	12	5	414	5	FAM70A	23	119410840	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	161240	119410840	35859720	1346	51302										
ATP1B4	0	genome.wustl.edu	37	chrX	119500623	119500623	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagagagaaggatgtttctgGcccgaacaggtcagagttgg	15	7	2	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	119500623	119500623	G	A	SNP	ATP1B4	ENST00000218008	human	ensembl	69_37n	1	known	missense	c.307	p.A103T	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B4	HGNC	ENSG00000101892	121	0	0	84	37	30.33	-	-	-	A	119500623	G	A	119500623	3	1	569	1	0	0	0	0	1	0	0	0	1139	1203	42	4	313	4	ATP1B4	23	119500623	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	89783	119500623	35769937	1347	51303										
CT47B1	0	genome.wustl.edu	37	chrX	120008753	120008753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gccgctagcccccttaccctCgggggccacggcctcctctg	11	20	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	120008753	120008753	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	69_37n	-1	known	missense	c.772	p.E258K	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446	280	1	0.35	168	93	35.36	-	-	-	T	120008753	C	T	120008753	3	4	569	1	0	0	0	0	1	0	0	0	4021	893	31	1	135	1	CT47B1	23	120008753	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	508130	120008753	35261807	1348	51304										
BCORL1	0	genome.wustl.edu	37	chrX	129171439	129171439	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgaggcttgttcccggggctGgaccgacatcctgaacatcc	12	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	129171439	129171439	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.4625	p.W1542L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	104	0	0	66	42	38.89	-	-	-	T	129171439	G	T	129171439	3	4	569	1	0	0	0	0	1	0	0	0	1391	1357	47	4	4659	4	BCORL1	23	129171439	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	9162686	129171439	26099121	1349	51305										
ARHGAP36	0	genome.wustl.edu	37	chrX	130222619	130222619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	caggttcctctgaggagccaGctgtgccttccggcactgcc	12	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	130222619	130222619	G	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	missense	c.1504	p.A502T	0.994	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	139	0	0	108	58	34.94	-	-	-	A	130222619	G	A	130222619	3	1	569	1	0	0	0	0	1	0	0	0	885	971	34	4	1546	4	ARHGAP36	23	130222619	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	1051180	130222619	25047941	1350	51306										
FRMD7	0	genome.wustl.edu	37	chrX	131214255	131214255	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggcaagctcttcagcctcccTtttctcccatattccaaaag	5	15	3	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	131214255	131214255	T	C	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	silent	c.945	p.K315	0.880	pfam_FERM-adjacent	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	459	0	0	296	206	41.04	-	-	-	C	131214255	T	C	131214255	2	2	569	1	0	0	0	0	0	0	0	1	6104	1606	56	5		5	FRMD7	23	131214255	Silent	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	991636	131214255	24056305	1351	51307										
HS6ST2	0	genome.wustl.edu	37	chrX	132091143	132091143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtctaccttgcgcaggaggtCgccgcgggtgaaattgtagc	15	10	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	132091143	132091143	C	T	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.640	p.D214N	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	78	0	0	51	26	33.77	-	-	-	T	132091143	C	T	132091143	3	4	569	1	0	0	0	0	1	0	0	0	7422	884	31	1	1313	1	HS6ST2	23	132091143	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	876888	132091143	23179417	1352	51308										
DDX26B	0	genome.wustl.edu	37	chrX	134683685	134683685	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtgttcctgttggacattgGccaattccagaatctttttg	10	8	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	134683685	134683685	G	C	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.861	p.W287C	1.000	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	241	0	0	215	124	36.58	-	-	-	C	134683685	G	C	134683685	3	2	569	1	0	0	0	0	1	0	0	0	4384	1212	42	4	887	4	DDX26B	23	134683685	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	2592542	134683685	20586875	1353	51309										
DDX26B	0	genome.wustl.edu	37	chrX	134713877	134713877	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctgacgacttcacaagtctcAgcaaagatgggctgattcaa	9	10	3	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	134713877	134713877	A	C	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.2173	p.S725R	0.736	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	210	0	0	144	84	36.84	-	-	-	C	134713877	A	C	134713877	3	2	569	1	0	0	0	0	1	0	0	0	4384	188	7	5	2231	5	DDX26B	23	134713877	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	30192	134713877	20556683	1354	51310										
AFF2	0	genome.wustl.edu	37	chrX	148037681	148037681	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	aagtacagagggcctggcaaGattgtgccaaagtctcggga	14	8	1	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	148037681	148037681	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.2106	p.K702N	0.959	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	154	0	0	99	73	42.44	-	-	-	T	148037681	G	T	148037681	3	4	569	1	0	0	0	0	1	0	0	0	357	933	33	2	2203	2	AFF2	23	148037681	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	13323804	148037681	7232879	1355	51311										
IDS	0	genome.wustl.edu	37	chrX	148577173	148577173	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	actgccatcttccatccgctAtagcttgcctgccacagcat	6	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	148577173	148577173	A	G	SNP	IDS	ENST00000466019	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IDS	HGNC	ENSG00000010404	133	0	0	108	43	28.29	-	-	-	G	148577173	A	G	148577173	1	3	569	0	1	0	0	0	0	0	0	0	7557	464	16	5		5	IDS	23	148577173	RNA	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	539492	148577173	6693387	1356	51312										
MAMLD1	0	genome.wustl.edu	37	chrX	149638928	149638928	+	Frame_Shift_Del	DEL	C	C	-													0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ccaccaccacccccattcagCccccagagcctcatggtgtc							TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	149638928	149638928	C	-	DEL	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	frame_shift_del	c.1008	p.Q338fs	1.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	89	0	0	53	21	27.27	-	-	-	-	149638928	C	-	149638928	7	5	569	1	0	1	0	1	0	0	0	0	9279	738	26	0	1093	0	MAMLD1	23	149638928	Frame_Shift_Del	DEL	C	TCGA-BH-A18G-01A-11D-A12B-09	1061755	149638928	5631632	1357	51313										
PRRG3	0	genome.wustl.edu	37	chrX	150873773	150873773	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gtcagactggccgctccatcAttcgcctccaaatattcaaa	6	14	3	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	150873773	150873773	A	G	SNP	PRRG3	ENST00000448324	human	ensembl	69_37n	1	known	silent	c.177	p.S59	0.001	NULL	NULL	-	no_start_codon	PRRG3	HGNC	ENSG00000130032	134	0	0	85	65	43.05	-	-	-	G	150873773	A	G	150873773	2	3	569	1	0	0	0	0	0	0	0	1	12687	232	8	5		5	PRRG3	23	150873773	Silent	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1234845	150873773	4396787	1358	51314										
PNMA5	0	genome.wustl.edu	37	chrX	152159203	152159203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctccagaaaattgggaggacAccctcgctgatccaagagct	10	12	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	152159203	152159203	A	G	SNP	PNMA5	ENST00000361887	human	ensembl	69_37n	-1	known	missense	c.940	p.C314R	0.005	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883	40	0	0	27	17	37.78	-	-	-	G	152159203	A	G	152159203	3	3	569	1	0	0	0	0	1	0	0	0	12230	159	6	5	410	5	PNMA5	23	152159203	Missense_Mutation	SNP	A	TCGA-BH-A18G-01A-11D-A12B-09	1285430	152159203	3111357	1359	51315										
BCAP31	0	genome.wustl.edu	37	chrX	152967532	152967532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cctcagactgcttccgcatgGccagaacctggttttcagct	9	14	2	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	152967532	152967532	G	A	SNP	BCAP31	ENST00000458587	human	ensembl	69_37n	-1	known	missense	c.833	p.A278V	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825	172	0	0	89	59	39.86	-	-	-	A	152967532	G	A	152967532	3	1	569	1	0	0	0	0	1	0	0	0	1351	1203	42	4	116	4	BCAP31	23	152967532	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	808329	152967532	2303028	1360	51316										
PDZD4	0	genome.wustl.edu	37	chrX	153073863	153073863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcggacgcagcttgcccagcGccatgatatgctcgaaggtg	14	12	0	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153073863	153073863	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.248	p.A83V	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	35	0	0	17	13	43.33	-	-	-	A	153073863	G	A	153073863	3	1	569	1	0	0	0	0	1	0	0	0	11776	1087	38	1	2089	1	PDZD4	23	153073863	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	106331	153073863	2196697	1361	51317										
ARHGAP4	0	genome.wustl.edu	37	chrX	153184655	153184655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ggtagtagttactgacagcaGcgttgacactagccaggcta	12	9	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153184655	153184655	G	A	SNP	ARHGAP4	ENST00000350060	human	ensembl	69_37n	-1	known	missense	c.764	p.A255V	0.488	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP4	HGNC	ENSG00000089820	283	1	0.35	145	91	38.24	-	-	-	A	153184655	G	A	153184655	3	1	569	1	0	0	0	0	1	0	0	0	887	971	34	4	2144	4	ARHGAP4	23	153184655	Missense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	110792	153184655	2085905	1362	51318										
HCFC1	0	genome.wustl.edu	37	chrX	153218311	153218311	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgggaggctgacaggacctcGgcggactcccccatcagggc	15	14	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153218311	153218311	G	A	SNP	HCFC1	ENST00000444191	human	ensembl	69_37n	-1	novel	nonsense	c.319	p.R107*	0.024	NULL	superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HCFC1	HGNC	ENSG00000172534	31	0	0	19	7	26.92	-	-	-	A	153218311	G	A	153218311	4	1	569	1	0	0	0	0	0	1	0	0	7042	1103	39	1	1543	1	HCFC1	23	153218311	Nonsense_Mutation	SNP	G	TCGA-BH-A18G-01A-11D-A12B-09	33656	153218311	2052249	1363	51319										
HCFC1	0	genome.wustl.edu	37	chrX	153222966	153222966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	cagcttcaggattgttcccgCtggcaggggccctttggtct	13	12	2	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153222966	153222966	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.2152	p.A718T	0.998	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	214	0	0	143	125	46.64	-	-	-	T	153222966	C	T	153222966	3	4	569	1	0	0	0	0	1	0	0	0	7042	797	28	4	4011	4	HCFC1	23	153222966	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	4655	153222966	2047594	1364	51320										
TKTL1	0	genome.wustl.edu	37	chrX	153553734	153553734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agaaactatggttatttacaCcccacaagaacgctttgaga	7	9	0	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153553734	153553734	C	A	SNP	TKTL1	ENST00000369915	human	ensembl	69_37n	1	known	missense	c.1367	p.T456N	0.000	superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	382	0	0	245	166	40.29	-	-	-	A	153553734	C	A	153553734	3	1	569	1	0	0	0	0	1	0	0	0	16030	507	18	4	1405	4	TKTL1	23	153553734	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	330768	153553734	1716826	1365	51321										
GDI1	0	genome.wustl.edu	37	chrX	153669689	153669689	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	agtcttcagagtcatgactgTgggtgagaggtctctttcag	13	7	5	3			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153669689	153669689	T	C	SNP	GDI1	ENST00000471972	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.020	-	-	-	no_errors	GDI1	HGNC	ENSG00000203879	53	0	0	27	15	35.71	-	-	-	C	153669689	T	C	153669689	1	2	569	0	1	0	0	0	0	0	0	0	6372	1711	59	5		5	GDI1	23	153669689	RNA	SNP	T	TCGA-BH-A18G-01A-11D-A12B-09	115955	153669689	1600871	1366	51322										
PLXNA3	0	genome.wustl.edu	37	chrX	153688844	153688844	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	ctcatagactatgcggcccgCcgcctggtggcctgcggcag	14	15	1	1			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153688844	153688844	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.321	p.R107	0.999	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	27	0	0	14	10	41.67	-	-	-	T	153688844	C	T	153688844	2	4	569	1	0	0	0	0	0	0	0	1	12195	726	26	4		4	PLXNA3	23	153688844	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	19155	153688844	1581716	1367	51323										
PLXNA3	0	genome.wustl.edu	37	chrX	153691977	153691977	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	tgtgagcagtaccagagctgCgcagcctgcctgggctccgg	15	13	0	2			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153691977	153691977	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.1491	p.C497	0.020	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	14	0	0	10	7	41.18	-	-	-	T	153691977	C	T	153691977	2	4	569	1	0	0	0	0	0	0	0	1	12195	776	27	1		1	PLXNA3	23	153691977	Silent	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	3133	153691977	1578583	1368	51324										
PLXNA3	0	genome.wustl.edu	37	chrX	153699600	153699600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00879765395894428	12	1	0.161786719102586	0.827808712741566	0.139361736151779	0.0187698158878811	0.215963293392326	0	gcaccgcctggggaaggactCgccctccaacaaactgctct	10	16	1	0			TCGA-BH-A18G-01A-11D-A12B-09	TCGA-BH-A18G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f080655-65bd-42af-8cde-15dc2d255f3c	fdeda5fc-8cdb-45d8-bd01-1caa1c068af0	X	153699600	153699600	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.5309	p.S1770L	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	286	0	0	170	86	33.59	-	-	-	T	153699600	C	T	153699600	3	4	569	1	0	0	0	0	1	0	0	0	12195	893	31	1	5427	1	PLXNA3	23	153699600	Missense_Mutation	SNP	C	TCGA-BH-A18G-01A-11D-A12B-09	7623	153699600	1570960	1369	51325										
PRAMEF14	0	genome.wustl.edu	37	chr1	13668994	13668994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	aatgaagatcctcttgggctGcctgacttccctcagtgtac	9	12	2	3			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	1	13668994	13668994	G	T	SNP	PRAMEF14	ENST00000334600	human	ensembl	69_37n	-1	known	missense	c.1336	p.Q446K	0.002	NULL	NULL	-	no_errors	PRAMEF14	HGNC	ENSG00000204481	38	0	0	83	10	10.64	-	-	-	T	13668994	G	T	13668994	3	4	570	1	0	0	0	0	1	0	0	0	12507	1328	46	4	1385	4	PRAMEF14	1	13668994	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		13668994	235581627	1	51326										
SPEN	0	genome.wustl.edu	37	chr1	16262615	16262615	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tggtggtgacccatggggtgCagattgtgcactccagcggg	17	9	0	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	1	16262615	16262615	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.9880	p.Q3294*	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	57	0	0	70	17	19.1	-	-	-	T	16262615	C	T	16262615	4	4	570	1	0	0	0	0	0	1	0	0	15129	711	25	4	9922	4	SPEN	1	16262615	Nonsense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09	2593621	16262615	232988006	2	51327										
SLC26A9	0	genome.wustl.edu	37	chr1	205899028	205899028	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	ccccagactcacaaagacgaTggaccctgggcctgtgtagg	12	13	1	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	1	205899028	205899028	T	C	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.709	p.I237V	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	62	0	0	95	13	11.93	-	-	-	C	205899028	T	C	205899028	3	2	570	1	0	0	0	0	1	0	0	0	14613	1464	51	5	2026	5	SLC26A9	1	205899028	Missense_Mutation	SNP	T	TCGA-BH-A18H-01A-11D-A12B-09	189636413	205899028	43351593	3	51328										
COL6A3	0	genome.wustl.edu	37	chr2	238303252	238303252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gtgatgtctttaagggtttcCgtgtccccagccctttctgg	11	11	2	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	2	238303252	238303252	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.687	p.T229	0.722	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	261	0	0	244	84	25.61	-	-	-	T	238303252	C	T	238303252	2	4	570	1	0	0	0	0	0	0	0	1	3731	639	23	1		1	COL6A3	2	238303252	Silent	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09		238303252	4896121	4	51329										
CAMK1	0	genome.wustl.edu	37	chr3	9803438	9803438	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gctgtagtacagcagattctCtggcttgaagggcaggaggg	16	7	1	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	3	9803438	9803438	C	T	SNP	CAMK1	ENST00000256460	human	ensembl	69_37n	-1	known	missense	c.433	p.E145K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1	HGNC	ENSG00000134072	134	0	0	212	44	17.19	-	-	-	T	9803438	C	T	9803438	3	4	570	1	0	0	0	0	1	0	0	0	2621	922	32	2	707	2	CAMK1	3	9803438	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09		9803438	188218992	5	51330										
MAPKAPK3	0	genome.wustl.edu	37	chr3	50679183	50679183	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	aggattcaggagcgtggcgaCcaggctttcactgagagagg	16	8	2	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	3	50679183	50679183	C	A	SNP	MAPKAPK3	ENST00000357955	human	ensembl	69_37n	1	known	missense	c.405	p.D135E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738	378	0	0	648	88	11.92	-	-	-	A	50679183	C	A	50679183	3	1	570	1	0	0	0	0	1	0	0	0	9361	506	18	4	415	4	MAPKAPK3	3	50679183	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09	40875745	50679183	147343247	6	51331										
PIK3CA	0	genome.wustl.edu	37	chr3	178952054	178952054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	aaactgagcaagaggctttgGagtatttcatgaaacaaatg	10	5	1	3			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	3	178952054	178952054	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3109	p.E1037K	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	206	0	0	168	54	24.22	-	-	-	A	178952054	G	A	178952054	3	1	570	1	0	0	0	0	1	0	0	0	11987	1175	41	2	3187	2	PIK3CA	3	178952054	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	128272871	178952054	19070376	7	51332										
FRAS1	0	genome.wustl.edu	37	chr4	79396611	79396611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gctacaatgtcagtgagaagGcagggtctgtcagtgtcacg	14	8	4	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	4	79396611	79396611	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.7702	p.A2568T	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	211	0	0	267	64	19.34	-	-	-	A	79396611	G	A	79396611	3	1	570	1	0	0	0	0	1	0	0	0	6090	1203	42	4	7991	4	FRAS1	4	79396611	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		79396611	111757665	8	51333										
ENOPH1	0	genome.wustl.edu	37	chr4	83375938	83375938	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gccggaatgaaggtgtacatCtattcctcagggagtgtgga	14	7	2	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	4	83375938	83375938	C	G	SNP	ENOPH1	ENST00000273920	human	ensembl	69_37n	1	known	missense	c.453	p.I151M	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_Enolase_ppase,tigrfam_HAD-SF_hydro_IA_v1	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_Enolase_ppase,tigrfam_HAD-SF_hydro_IA_v1	-	no_errors	ENOPH1	HGNC	ENSG00000145293	464	0	0	651	144	18.11	-	-	-	G	83375938	C	G	83375938	3	3	570	1	0	0	0	0	1	0	0	0	5161	903	32	2	467	2	ENOPH1	4	83375938	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09	3979327	83375938	107778338	9	51334										
SHPRH	0	genome.wustl.edu	37	chr6	146276233	146276233	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tggttttgagaagctcaccaCttttgaacacctcttcttat	6	10	3	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	6	146276233	146276233	C	G	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.226	p.V76L	0.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	243	1	0.41	226	31	12.06	-	-	-	G	146276233	C	G	146276233	3	3	570	1	0	0	0	0	1	0	0	0	14380	565	20	4	4985	4	SHPRH	6	146276233	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09		146276233	24838834	10	51335										
WNK2	0	genome.wustl.edu	37	chr9	96051418	96051418	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	accttgcactccagctccagAggctgcctcaaccagggacg	10	16	1	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	9	96051418	96051418	A	C	SNP	WNK2	ENST00000297954	human	ensembl	69_37n	1	known	missense	c.4493	p.E1498A	0.054	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	9	0	0	7	8	53.33	-	-	-	C	96051418	A	C	96051418	3	2	570	1	0	0	0	0	1	0	0	0	17475	304	11	5	4456	5	WNK2	9	96051418	Missense_Mutation	SNP	A	TCGA-BH-A18H-01A-11D-A12B-09		96051418	45162013	11	51336										
C9orf114	0	genome.wustl.edu	37	chr9	131587316	131587316	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	cccgggctccaggttcttgtCaatcttcacctcctggggag	11	14	4	0			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	9	131587316	131587316	C	T	SNP	C9orf114	ENST00000361256	human	ensembl	69_37n	-1	known	missense	c.652	p.D218N	1.000	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	-	no_errors	C9orf114	HGNC	ENSG00000198917	101	0	0	90	24	21.05	-	-	-	T	131587316	C	T	131587316	3	4	570	1	0	0	0	0	1	0	0	0	2474	826	29	2	498	2	C9orf114	9	131587316	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09	35535898	131587316	9626115	12	51337										
C11orf40	0	genome.wustl.edu	37	chr11	4593466	4593466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tttcattgctcccacaggtaGaggggctgagatccaggaaa	12	9	1	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	4593466	4593466	G	C	SNP	C11orf40	ENST00000307616	human	ensembl	69_37n	-1	known	missense	c.367	p.L123V	0.286	NULL	NULL	-	no_errors	C11orf40	HGNC	ENSG00000171987	249	0	0	266	38	12.5	-	-	-	C	4593466	G	C	4593466	3	2	570	1	0	0	0	0	1	0	0	0	1650	933	33	2	293	2	C11orf40	11	4593466	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		4593466	130413050	13	51338										
PRMT3	0	genome.wustl.edu	37	chr11	20486016	20486016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	taatgggtagcatatagattGccatacgacgtctatctcag	9	8	2	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	20486016	20486016	G	A	SNP	PRMT3	ENST00000331079	human	ensembl	69_37n	1	known	missense	c.1271	p.C424Y	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238	304	0	0	251	33	11.58	-	-	-	A	20486016	G	A	20486016	3	1	570	1	0	0	0	0	1	0	0	0	12619	1319	46	4	1321	4	PRMT3	11	20486016	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	15892550	20486016	114520500	14	51339										
CCDC88B	0	genome.wustl.edu	37	chr11	64111763	64111763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	aagagtcaggctctcctgtgGagacacaggagtccccggag	14	11	2	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	64111763	64111763	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	69_37n	1	known	missense	c.1750	p.E584K	0.825	NULL	pfam_HOOK	-	no_errors	CCDC88B	HGNC	ENSG00000168071	28	0	0	28	5	15.15	-	-	-	A	64111763	G	A	64111763	3	1	570	1	0	0	0	0	1	0	0	0	2891	1175	41	2	1804	2	CCDC88B	11	64111763	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	43625747	64111763	70894753	15	51340										
RCE1	0	genome.wustl.edu	37	chr11	66613002	66613002	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tcctacacagctgtcttcggTgcctacactgctttcctctt	6	15	2	0			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	66613002	66613002	T	G	SNP	RCE1	ENST00000309657	human	ensembl	69_37n	1	known	silent	c.723	p.G241	0.997	pfam_CAAX_protease	pfam_CAAX_protease	-	no_errors	RCE1	HGNC	ENSG00000173653	266	2	0.75	235	140	37.23	-	-	-	G	66613002	T	G	66613002	2	3	570	1	0	0	0	0	0	0	0	1	13259	1683	59	5		5	RCE1	11	66613002	Silent	SNP	T	TCGA-BH-A18H-01A-11D-A12B-09	2501239	66613002	68393514	16	51341										
KLHL35	0	genome.wustl.edu	37	chr11	75133746	75133746	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gaagaccttatcggtgctttCtccgcgatcatcccgcccgc	9	16	2	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	75133746	75133746	C	T	SNP	KLHL35	ENST00000539798	human	ensembl	69_37n	-1	known	missense	c.1630	p.E544K	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL35	HGNC	ENSG00000149243	71	0	0	94	13	12.15	-	-	-	T	75133746	C	T	75133746	3	4	570	1	0	0	0	0	1	0	0	0	8441	922	32	2	125	2	KLHL35	11	75133746	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09	8520744	75133746	59872770	17	51342										
PRCP	0	genome.wustl.edu	37	chr11	82536048	82536048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gcacagacataggatccaagGcattcttggtgcggagatct	12	9	2	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	11	82536048	82536048	G	A	SNP	PRCP	ENST00000393399	human	ensembl	69_37n	-1	known	missense	c.1454	p.A485V	0.032	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509	207	0	0	244	66	21.29	-	-	-	A	82536048	G	A	82536048	3	1	570	1	0	0	0	0	1	0	0	0	12530	1203	42	4	103	4	PRCP	11	82536048	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	7402302	82536048	52470468	18	51343										
A2M	0	genome.wustl.edu	37	chr12	9230409	9230409	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	gtgcttcatcgatgaagatgTaggctcgagcttgggcaaaa	13	7	1	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	12	9230409	9230409	T	C	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	missense	c.3164	p.Y1055C	0.143	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	275	0	0	292	57	16.33	-	-	-	C	9230409	T	C	9230409	3	2	570	1	0	0	0	0	1	0	0	0	4	1638	57	5	1304	5	A2M	12	9230409	Missense_Mutation	SNP	T	TCGA-BH-A18H-01A-11D-A12B-09		9230409	124621486	19	51344										
OR6C65	0	genome.wustl.edu	37	chr12	55794894	55794894	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	acagacacacagtttctagaGcttatggcatttttgctagc	8	9	1	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	12	55794894	55794894	G	A	SNP	OR6C65	ENST00000379665	human	ensembl	69_37n	1	known	silent	c.582	p.E194	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C65	HGNC	ENSG00000205328	464	0	0	581	166	22.22	-	-	-	A	55794894	G	A	55794894	2	1	570	1	0	0	0	0	0	0	0	1	11268	962	34	4		4	OR6C65	12	55794894	Silent	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	46564485	55794894	78057001	20	51345										
SPRED1	0	genome.wustl.edu	37	chr15	38614571	38614571	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	ctgctgatgctagggcttttGatagaggtatccgaagagct	13	7	0	4			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	15	38614571	38614571	G	A	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.337	p.D113N	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	424	0	0	348	48	12.12	-	-	-	A	38614571	G	A	38614571	3	1	570	1	0	0	0	0	1	0	0	0	15183	1290	45	2	347	2	SPRED1	15	38614571	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		38614571	63916821	21	51346										
NDUFAF1	0	genome.wustl.edu	37	chr15	41687218	41687219	+	Frame_Shift_Del	DEL	AA	AA	-													0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	attgaactgggaccaatcgtAagacatcttcctctcaaaag							TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	15	41687218	41687219	AA	-	DEL	NDUFAF1	ENST00000260361	human	ensembl	69_37n	-1	known	frame_shift_del	c.598_597	p.Y200fs	0.999:0.939	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	294	0	0	251	62	19.25	-	-	-	-	41687219	AA	-	41687218	7	5	570	1	0	1	0	1	0	0	0	0	10346	362	13	0	397	0	NDUFAF1	15	41687218	Frame_Shift_Del	DEL	AA	TCGA-BH-A18H-01A-11D-A12B-09	3072647	41687218	60844174	22	51347										
SECISBP2L	0	genome.wustl.edu	37	chr15	49309150	49309150	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tttgcacgtttgggaactgaGgtggtaataggaattggagt	15	3	0	1			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	15	49309150	49309150	G	A	SNP	SECISBP2L	ENST00000559471	human	ensembl	69_37n	-1	known	silent	c.1314	p.T438	0.960	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593	410	0	0	391	53	11.94	-	-	-	A	49309150	G	A	49309150	2	1	570	1	0	0	0	0	0	0	0	1	14095	987	35	4		4	SECISBP2L	15	49309150	Silent	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09	7621932	49309150	53222242	23	51348										
ITGAX	0	genome.wustl.edu	37	chr16	31393187	31393187	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	caaatggacaaattgccccaGaaaacgggacacagaccccc	8	14	0	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	16	31393187	31393187	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.3451	p.E1151K	0.001	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	268	1	0.37	344	98	22.12	-	-	-	A	31393187	G	A	31393187	3	1	570	1	0	0	0	0	1	0	0	0	7943	943	33	2	3569	2	ITGAX	16	31393187	Missense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		31393187	58961566	24	51349										
TP53	0	genome.wustl.edu	37	chr17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	ggtcccaagacttagtacctGaagggtgaaatattctccat	9	9	1	3			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	17	7576855	7576855	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	0.999	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	374	0	0	322	114	26.15	-	-	-	A	7576855	G	A	7576855	4	1	570	1	0	0	0	0	0	1	0	0	16477	1299	45	2	291	2	TP53	17	7576855	Nonsense_Mutation	SNP	G	TCGA-BH-A18H-01A-11D-A12B-09		7576855	73618355	25	51350										
BIRC8	0	genome.wustl.edu	37	chr19	53793366	53793366	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	agtttgtaccagagctccctCaagtgaacgggttaaatgaa	10	8	1	3			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	19	53793366	53793366	C	G	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	missense	c.262	p.E88Q	0.531	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	524	0	0	1590	340	17.61	-	-	-	G	53793366	C	G	53793366	3	3	570	1	0	0	0	0	1	0	0	0	1445	835	29	2	452	2	BIRC8	19	53793366	Missense_Mutation	SNP	C	TCGA-BH-A18H-01A-11D-A12B-09		53793366	5335617	26	51351										
DMD	0	genome.wustl.edu	37	chrX	32717338	32717338	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	tggcttcaatgctcacttgtTgaggcaaaacttggaagagt	11	7	2	2			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	X	32717338	32717338	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.722	p.Q241R	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	392	0	0	517	81	13.55	-	-	-	C	32717338	T	C	32717338	3	2	570	1	0	0	0	0	1	0	0	0	4616	1812	63	5	10866	5	DMD	23	32717338	Missense_Mutation	SNP	T	TCGA-BH-A18H-01A-11D-A12B-09		32717338	122553222	27	51352										
SLC9A6	0	genome.wustl.edu	37	chrX	135126700	135126700	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.321428571428571	9	0.00972142535577545	2.96703296703297	4.6978021978022	2.50549450549451	0.346935417523653	0.950412796697626	6	ggagattctactgtgaacacTgaaccggccacatccagcgc	10	13	1	3			TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3c1b990-aae2-45f8-be28-8ccd192a0fab	7f061cf1-1d86-453c-9817-cf0cba8ea87a	X	135126700	135126700	T	A	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	silent	c.1923	p.T641	0.053	prints_Na/H_exchanger_6	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	177	0	0	193	45	18.75	-	-	-	A	135126700	T	A	135126700	2	1	570	1	0	0	0	0	0	0	0	1	14807	1567	55	5		5	SLC9A6	23	135126700	Silent	SNP	T	TCGA-BH-A18H-01A-11D-A12B-09	102409362	135126700	20143860	28	51353										
GPN2	0	genome.wustl.edu	37	chr1	27210723	27210723	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ttcgctgctcttgggctctgAaacagtatccattggcttta	9	10	2	1			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	1	27210723	27210723	A	T	SNP	GPN2	ENST00000374135	human	ensembl	69_37n	-1	known	missense	c.788	p.F263Y	1.000	NULL	pfam_Uncharacterised_ATP-bd	-	no_errors	GPN2	HGNC	ENSG00000142751	71	0	0	53	24	31.17	-	-	-	T	27210723	A	T	27210723	3	4	571	1	0	0	0	0	1	0	0	0	6668	246	9	5	152	5	GPN2	1	27210723	Missense_Mutation	SNP	A	TCGA-BH-A18I-01A-11D-A12B-09		27210723	222039898	1	51354										
IQGAP3	0	genome.wustl.edu	37	chr1	156499903	156499903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	gcccaggttgttaccttggcCagctcgtccactagcccctg	10	16	0	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	1	156499903	156499903	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	silent	c.4398	p.L1466	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	22	0	0	18	13	41.94	-	-	-	T	156499903	C	T	156499903	2	4	571	1	0	0	0	0	0	0	0	1	7870	581	21	4		4	IQGAP3	1	156499903	Silent	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09	129289180	156499903	92750718	2	51355										
CNTNAP5	0	genome.wustl.edu	37	chr2	125547610	125547610	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	caggctgccccggccactgcAgcagctacggcagcatctgc	12	17	1	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	2	125547610	125547610	A	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.2881	p.S961C	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	58	0	0	38	10	20.83	-	-	-	T	125547610	A	T	125547610	3	4	571	1	0	0	0	0	1	0	0	0	3680	188	7	5	2951	5	CNTNAP5	2	125547610	Missense_Mutation	SNP	A	TCGA-BH-A18I-01A-11D-A12B-09		125547610	117651763	3	51356										
ARHGEF4	0	genome.wustl.edu	37	chr2	131796570	131796570	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ggtggtggggccgggtcgccGatggcgagggctggtttcca	21	9	0	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	2	131796570	131796570	G	A	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	1	known	missense	c.712	p.D238N	0.886	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	59	0	0	31	27	45.76	-	-	-	A	131796570	G	A	131796570	3	1	571	1	0	0	0	0	1	0	0	0	910	1058	37	1	726	1	ARHGEF4	2	131796570	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09	6248960	131796570	111402803	4	51357										
LCT	0	genome.wustl.edu	37	chr2	136570313	136570313	+	Frame_Shift_Del	DEL	A	A	-													0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ggtcctcagggtggctgggtAgtctccatccacaaagacgg							TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	2	136570313	136570313	A	-	DEL	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	frame_shift_del	c.1921	p.Y641fs	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	115	0	0	87	26	22.81	-	-	-	-	136570313	A	-	136570313	7	5	571	1	0	1	0	1	0	0	0	0	8747	420	15	0	3906	0	LCT	2	136570313	Frame_Shift_Del	DEL	A	TCGA-BH-A18I-01A-11D-A12B-09	4773743	136570313	106629060	5	51358										
KLF7	0	genome.wustl.edu	37	chr2	207998800	207998800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	tttacactcactggccaagaCgggaacatgccgaaccagtt	9	12	1	1			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	2	207998800	207998800	C	T	SNP	KLF7	ENST00000412414	human	ensembl	69_37n	-1	known	silent	c.9	p.P3	0.901	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	8	0	0	3	6	66.67	-	-	-	T	207998800	C	T	207998800	2	4	571	1	0	0	0	0	0	0	0	1	8404	551	19	1		1	KLF7	2	207998800	Silent	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09	71428487	207998800	35200573	6	51359										
BCHE	0	genome.wustl.edu	37	chr3	165504044	165504044	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	caaggttagatatttttgttCagtgcttttgaagacaggcc	10	6	1	3			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	3	165504044	165504044	C	A	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	nonsense	c.1573	p.E525*	0.985	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	471	0	0	376	211	35.95	-	-	-	A	165504044	C	A	165504044	4	1	571	1	0	0	0	0	0	1	0	0	1362	835	29	2	243	2	BCHE	3	165504044	Nonsense_Mutation	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09		165504044	32518386	7	51360										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	277	0	0	162	72	30.77	-	-	-	A	178936082	G	A	178936082	3	1	571	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09	13432038	178936082	19086348	8	51361										
GAB1	0	genome.wustl.edu	37	chr4	144360988	144360988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	agactgctatgatattccacGagcatttccaagtgatagat	8	8	0	4			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	4	144360988	144360988	G	A	SNP	GAB1	ENST00000262995	human	ensembl	69_37n	1	known	missense	c.1229	p.R410Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458	326	1	0.31	284	139	32.86	-	-	-	A	144360988	G	A	144360988	3	1	571	1	0	0	0	0	1	0	0	0	6197	1058	37	1	1247	1	GAB1	4	144360988	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		144360988	46793288	9	51362										
PCDHGA1	0	genome.wustl.edu	37	chr5	140710391	140710391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	caaaggttccttcgtaggcaAcatcgccaaggacctagggc	11	12	0	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	5	140710391	140710391	A	G	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.140	p.N47S	0.990	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	132	0	0	106	52	32.91	-	-	-	G	140710391	A	G	140710391	3	3	571	1	0	0	0	0	1	0	0	0	11623	43	2	5	142	5	PCDHGA1	5	140710391	Missense_Mutation	SNP	A	TCGA-BH-A18I-01A-11D-A12B-09		140710391	40204869	10	51363										
PCDHGB6	0	genome.wustl.edu	37	chr5	140788500	140788500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	taaccccccggttttcagcaGagacgaatatagaattagtc	8	10	1	2			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	5	140788500	140788500	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.731	p.R244K	0.842	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	106	0	0	85	38	30.89	-	-	-	A	140788500	G	A	140788500	3	1	571	1	0	0	0	0	1	0	0	0	11640	942	33	2	733	2	PCDHGB6	5	140788500	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09	78109	140788500	40126760	11	51364										
GRK6	0	genome.wustl.edu	37	chr5	176860631	176860631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	gcggaaaggggaggccatggCgctgaacgagaagcagatcc	17	9	0	3			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	5	176860631	176860631	C	T	SNP	GRK6	ENST00000528793	human	ensembl	69_37n	1	known	missense	c.692	p.A231V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_GPCR_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK6	HGNC	ENSG00000198055	163	0	0	100	50	33.33	-	-	-	T	176860631	C	T	176860631	3	4	571	1	0	0	0	0	1	0	0	0	6844	768	27	1	722	1	GRK6	5	176860631	Missense_Mutation	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09	36072131	176860631	4054629	12	51365										
HACE1	0	genome.wustl.edu	37	chr6	105198288	105198288	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	aagccctgtaaaaaagcattGatctgaggctgaatggctct	10	8	2	3			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	6	105198288	105198288	G	A	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	silent	c.2271	p.I757	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	325	2	0.61	112	121	51.93	-	-	-	A	105198288	G	A	105198288	2	1	571	1	0	0	0	0	0	0	0	1	6991	1280	45	2		2	HACE1	6	105198288	Silent	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		105198288	65916779	13	51366										
GLCCI1	0	genome.wustl.edu	37	chr7	8099816	8099816	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	tgccctgcaatgtagaaggaAtaagtcctgaattagaaaag	10	6	0	3			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	7	8099816	8099816	A	G	SNP	GLCCI1	ENST00000223145	human	ensembl	69_37n	1	known	missense	c.904	p.I302V	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	250	0	0	216	107	33.13	-	-	-	G	8099816	A	G	8099816	3	3	571	1	0	0	0	0	1	0	0	0	6483	101	4	5	922	5	GLCCI1	7	8099816	Missense_Mutation	SNP	A	TCGA-BH-A18I-01A-11D-A12B-09		8099816	151038847	14	51367										
HMBOX1	0	genome.wustl.edu	37	chr8	28827654	28827654	+	Frame_Shift_Del	DEL	A	A	-													0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ttcggcgtactggaatgactAaacatgaaattctccatgcc							TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	8	28827654	28827654	A	-	DEL	HMBOX1	ENST00000444075	human	ensembl	69_37n	1	known	frame_shift_del	c.118	p.K40fs	1.000	pfam_HNF-1_N	pfam_HNF-1_N,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HMBOX1	HGNC	ENSG00000147421	91	0	0	28	20	41.67	-	-	-	-	28827654	A	-	28827654	7	5	571	1	0	1	0	1	0	0	0	0	7269	363	13	0	124	0	HMBOX1	8	28827654	Frame_Shift_Del	DEL	A	TCGA-BH-A18I-01A-11D-A12B-09		28827654	117536368	15	51368										
ZFHX4	0	genome.wustl.edu	37	chr8	77775608	77775609	+	Frame_Shift_Ins	INS	-	-	A													0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	aaaacaccccaaaaaagaggINSaaaaaatctcatctgctctt							TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	8	77775608	77775609	-	A	INS	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	frame_shift_ins	c.9658_9659	p.I3222fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	369	0	0	296	389	56.79	-	-	-	A	77775609	-	A	77775608	7	5	571	1	0	1	1	0	0	0	0	0	17731	1175	41	0	9696	0	ZFHX4	8	77775608	Frame_Shift_Ins	INS	-	TCGA-BH-A18I-01A-11D-A12B-09	48947954	77775608	68588414	16	51369										
CAMKK2	0	genome.wustl.edu	37	chr12	121712041	121712041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ctcttgcagagacagcttgcGaccggagaggtggggccggg	18	10	1	2			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	12	121712041	121712041	G	A	SNP	CAMKK2	ENST00000324774	human	ensembl	69_37n	-1	known	missense	c.289	p.R97C	0.981	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	18	0	0	12	11	47.83	-	-	-	A	121712041	G	A	121712041	3	1	571	1	0	0	0	0	1	0	0	0	2632	1058	37	1	1551	1	CAMKK2	12	121712041	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		121712041	12139854	17	51370										
UGGT2	0	genome.wustl.edu	37	chr13	96529583	96529583	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ccttggtgtaacctcagtatCcaagcacctgggtttgcttt	9	11	1	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	13	96529583	96529583	C	G	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.3423	p.W1141C	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	275	0	0	227	101	30.79	-	-	-	G	96529583	C	G	96529583	3	3	571	1	0	0	0	0	1	0	0	0	17039	856	30	2	1171	2	UGGT2	13	96529583	Missense_Mutation	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09		96529583	18640295	18	51371										
ATP10A	0	genome.wustl.edu	37	chr15	25947227	25947227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	agggactccgtcctgcaggcGgtcttcaatcccagtggcac	12	14	2	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	15	25947227	25947227	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.2596	p.R866C	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	91	0	0	75	45	37.5	-	-	-	A	25947227	G	A	25947227	3	1	571	1	0	0	0	0	1	0	0	0	1120	1116	39	1	1939	1	ATP10A	15	25947227	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		25947227	76584165	19	51372										
MAP1A	0	genome.wustl.edu	37	chr15	43814174	43814174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	cactctgcagcacttaaaccGcctgggcatccaggctgagc	10	15	1	1			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	15	43814174	43814174	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.503	p.R168H	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	94	0	0	62	31	31.63	-	-	-	A	43814174	G	A	43814174	3	1	571	1	0	0	0	0	1	0	0	0	9298	1087	38	1	505	1	MAP1A	15	43814174	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09	17866947	43814174	58717218	20	51373										
MYO9A	0	genome.wustl.edu	37	chr15	72192139	72192139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	tccatcttgcttgtatgcaaAtagcagccatgtgcctgcgc	9	12	1	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	15	72192139	72192139	A	G	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.3359	p.I1120T	0.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	160	0	0	108	55	33.74	-	-	-	G	72192139	A	G	72192139	3	3	571	1	0	0	0	0	1	0	0	0	10156	101	4	5	4363	5	MYO9A	15	72192139	Missense_Mutation	SNP	A	TCGA-BH-A18I-01A-11D-A12B-09	28377965	72192139	30339253	21	51374										
NLRC3	0	genome.wustl.edu	37	chr16	3611738	3611738	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	cgacagtccttcccactcagCacgctgcccagcagctccat	7	19	1	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	16	3611738	3611738	C	T	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	silent	c.2121	p.V707	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	66	0	0	47	61	56.48	-	-	-	T	3611738	C	T	3611738	2	4	571	1	0	0	0	0	0	0	0	1	10540	697	25	4		4	NLRC3	16	3611738	Silent	SNP	C	TCGA-BH-A18I-01A-11D-A12B-09		3611738	86743015	22	51375										
CEP192	0	genome.wustl.edu	37	chr18	13059100	13059100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ggtggatctttcaacatatcGttgtttagttttcaagaata	8	5	3	1			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	18	13059100	13059100	G	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.4277	p.R1426H	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	132	0	0	97	74	43.27	-	-	-	A	13059100	G	A	13059100	3	1	571	1	0	0	0	0	1	0	0	0	3280	1145	40	1	4355	1	CEP192	18	13059100	Missense_Mutation	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		13059100	65018148	23	51376										
POU2F2	0	genome.wustl.edu	37	chr19	42599576	42599576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.553664374396628	1.76923076923077	0	1.8956043956044	0.142857142857143	0.62934362934363	0	ttctccatgtgcagctgctcGgcgatcagcaggatctcctc	10	14	3	0			TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f0ca4831-d56d-4bae-b304-bb43c5d2f09b	1928c46f-5e68-4b04-b9e8-b3f0363684a0	19	42599576	42599576	G	A	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	silent	c.993	p.A331	0.228	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	81	0	0	46	10	17.86	-	-	-	A	42599576	G	A	42599576	2	1	571	1	0	0	0	0	0	0	0	1	12345	1103	39	1		1	POU2F2	19	42599576	Silent	SNP	G	TCGA-BH-A18I-01A-11D-A12B-09		42599576	16529407	24	51377										
RLF	0	genome.wustl.edu	37	chr1	40703390	40703390	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	atgaacataatcagacaactGaaaagttggatgcagaacct	8	7	1	4			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	40703390	40703390	G	A	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.3016	p.E1006K	0.992	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	104	0	0	177	104	36.88	-	-	-	A	40703390	G	A	40703390	3	1	572	1	0	0	0	0	1	0	0	0	13475	1291	45	2	3046	2	RLF	1	40703390	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		40703390	208547231	1	51378										
NEXN	0	genome.wustl.edu	37	chr1	78381798	78381798	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cacatagagcaaacatgaatGatatttcccaaaaggctgag	8	8	0	4			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	78381798	78381798	G	A	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.7	p.D3N	1.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	148	0	0	91	16	14.95	-	-	-	A	78381798	G	A	78381798	3	1	572	1	0	0	0	0	1	0	0	0	10427	1290	45	2	9	2	NEXN	1	78381798	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	37678408	78381798	170868823	2	51379										
C1orf31	0	genome.wustl.edu	37	chr1	234519488	234519488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gataaaatattttgataaaaGaagagactacttaaaattca	5	3	1	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	234519488	234519488	G	A	SNP	C1orf31	ENST00000366615	human	ensembl	69_37n	1	known	missense	c.392	p.R131K	1.000	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	C1orf31	HGNC	ENSG00000168275	121	0	0	102	33	24.44	-	-	-	A	234519488	G	A	234519488	3	1	572	1	0	0	0	0	1	0	0	0	2057	942	33	2	312	2	C1orf31	1	234519488	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	156137690	234519488	14731133	3	51380										
DNMT3A	0	genome.wustl.edu	37	chr2	25471111	25471111	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttcctgcaatgaccttggctTtcttctcagcctggggaaac	9	12	2	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	25471111	25471111	T	G	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.650	p.K217T	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	167	0	0	145	36	19.89	-	-	-	G	25471111	T	G	25471111	3	3	572	1	0	0	0	0	1	0	0	0	4711	1841	64	5	2156	5	DNMT3A	2	25471111	Missense_Mutation	SNP	T	TCGA-BH-A18J-01A-11D-A12B-09		25471111	217728262	4	51381										
PLEK	0	genome.wustl.edu	37	chr2	68607462	68607462	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttttggttgtcattacagggGagcgtgttcaatacgtggaa	13	5	2	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68607462	68607462	G	C	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	1	known	silent	c.45	p.G15	0.795	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	126	0	0	117	33	22	-	-	-	C	68607462	G	C	68607462	2	2	572	1	0	0	0	0	0	0	0	1	12127	1161	41	2		2	PLEK	2	68607462	Silent	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	43136351	68607462	174591911	5	51382										
APLF	0	genome.wustl.edu	37	chr2	68804999	68804999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ataatgttgggcaacccaatGagtatgacctgaacgacagc	10	9	0	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68804999	68804999	G	A	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	missense	c.1381	p.E461K	0.519	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	387	0	0	331	122	26.87	-	-	-	A	68804999	G	A	68804999	3	1	572	1	0	0	0	0	1	0	0	0	777	1291	45	2	1419	2	APLF	2	68804999	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	197537	68804999	174394374	6	51383										
LIMS2	0	genome.wustl.edu	37	chr2	128399741	128399741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ggcaggcagtagagctcaccCttcagctcgcgggcctcggc	14	15	2	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	128399741	128399741	C	A	SNP	LIMS2	ENST00000324938	human	ensembl	69_37n	-1	known	missense	c.615	p.K205N	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163	16	0	0	10	5	33.33	-	-	-	A	128399741	C	A	128399741	3	1	572	1	0	0	0	0	1	0	0	0	8859	680	24	4	502	4	LIMS2	2	128399741	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	59594742	128399741	114799632	7	51384										
SCN1A	0	genome.wustl.edu	37	chr2	166859083	166859083	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttctattagttttaggcaatCagtatgattattcacgtctt	6	6	4	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	166859083	166859083	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4183	p.D1395N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	287	0	0	197	76	27.84	-	-	-	T	166859083	C	T	166859083	3	4	572	1	0	0	0	0	1	0	0	0	14002	826	29	2	1870	2	SCN1A	2	166859083	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	38459342	166859083	76340290	8	51385										
KBTBD10	0	genome.wustl.edu	37	chr2	170366577	170366577	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	acctgtactctgccagtattGatctcaatgacggaaatgtg	9	9	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	170366577	170366577	G	C	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	missense	c.289	p.D97H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	213	0	0	205	60	22.64	-	-	-	C	170366577	G	C	170366577	3	2	572	1	0	0	0	0	1	0	0	0	8044	1290	45	2	291	2	KBTBD10	2	170366577	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	3507494	170366577	72832796	9	51386										
MARS2	0	genome.wustl.edu	37	chr2	198570604	198570604	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gggtgcttaagtcccgcggtCtgctctacaagggcgtctat	13	11	3	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	198570604	198570604	C	T	SNP	MARS2	ENST00000282276	human	ensembl	69_37n	1	known	silent	c.475	p.L159	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626	38	0	0	25	11	30.56	-	-	-	T	198570604	C	T	198570604	2	4	572	1	0	0	0	0	0	0	0	1	9388	912	32	2		2	MARS2	2	198570604	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	28204027	198570604	44628769	10	51387										
EEF1B2	0	genome.wustl.edu	37	chr2	207027604	207027604	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gtggctgctttcaacaagatCtaaaatccatcctggatcat	7	10	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	207027604	207027604	C	G	SNP	EEF1B2	ENST00000236957	human	ensembl	69_37n	1	known	missense	c.675	p.I225M	1.000	pfam_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942	107	0	0	96	45	31.91	-	-	-	G	207027604	C	G	207027604	3	3	572	1	0	0	0	0	1	0	0	0	4960	903	32	2	697	2	EEF1B2	2	207027604	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	8457000	207027604	36171769	11	51388										
IL17RC	0	genome.wustl.edu	37	chr3	9959575	9959575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	caaattctgggcttggaacaGcttcagctcccacccgctcc	8	16	2	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	9959575	9959575	G	A	SNP	IL17RC	ENST00000451165	human	ensembl	69_37n	1	known	missense	c.155	p.S52N	0.002	NULL	NULL	-	no_errors	IL17RC	HGNC	ENSG00000163702	45	0	0	44	21	31.34	-	-	-	A	9959575	G	A	9959575	3	1	572	1	0	0	0	0	1	0	0	0	7695	986	34	4		4	IL17RC	3	9959575	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		9959575	188062855	12	51389										
GRIP2	0	genome.wustl.edu	37	chr3	14551332	14551332	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cagagccccagttcacctctCagccaggccacgcttggtga	10	16	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	14551332	14551332	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	52	0	0	124	20	13.89	-	-	-	T	14551332	C	T	14551332	1	4	572	0	1	0	0	0	0	0	0	0	6839	835	29	2		2	GRIP2	3	14551332	RNA	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	4591757	14551332	183471098	13	51390										
C3orf30	0	genome.wustl.edu	37	chr3	118865111	118865111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gccgctccctcaagtgctggCcacactaagggccaggaaga	12	14	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	118865111	118865111	C	T	SNP	C3orf30	ENST00000295622	human	ensembl	69_37n	1	known	silent	c.75	p.G25	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	54	0	0	40	13	24.53	-	-	-	T	118865111	C	T	118865111	2	4	572	1	0	0	0	0	0	0	0	1	2240	726	26	4		4	C3orf30	3	118865111	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	104313779	118865111	79157319	14	51391										
LRRIQ4	0	genome.wustl.edu	37	chr3	169539890	169539890	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	atttggagaataaccagattGaagaaattccccaggagatt	9	6	0	5			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	169539890	169539890	G	A	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	1	known	missense	c.181	p.E61K	0.072	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	140	0	0	140	34	19.54	-	-	-	A	169539890	G	A	169539890	3	1	572	1	0	0	0	0	1	0	0	0	9097	1291	45	2	183	2	LRRIQ4	3	169539890	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	50674779	169539890	28482540	15	51392										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	260	0	0	172	58	25.22	-	-	-	A	178936091	G	A	178936091	3	1	572	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	9396201	178936091	19086339	16	51393										
SLIT2	0	genome.wustl.edu	37	chr4	20541118	20541118	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	aatgacagtttcataggactCagttctgtgcgtttgctttc	9	8	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	20541118	20541118	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	silent	c.1887	p.L629	0.807	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	514	0	0	402	112	21.79	-	-	-	T	20541118	C	T	20541118	2	4	572	1	0	0	0	0	0	0	0	1	14829	813	29	2		2	SLIT2	4	20541118	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		20541118	170613158	17	51394										
ELMOD2	0	genome.wustl.edu	37	chr4	141446688	141446688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gtgaattgcagcgaatatttGatacctatgtaggtgcacaa	10	6	0	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	141446688	141446688	G	A	SNP	ELMOD2	ENST00000323570	human	ensembl	69_37n	1	known	missense	c.106	p.D36N	1.000	NULL	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD2	HGNC	ENSG00000179387	495	0	0	229	137	37.43	-	-	-	A	141446688	G	A	141446688	3	1	572	1	0	0	0	0	1	0	0	0	5106	1290	45	2	108	2	ELMOD2	4	141446688	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	120905570	141446688	49707588	18	51395										
SEMA5A	0	genome.wustl.edu	37	chr5	9154769	9154769	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	caaacagctgcttgaggtctGattcaggggtacccgcactt	11	11	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	9154769	9154769	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	nonsense	c.1312	p.Q438*	0.172	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	108	0	0	89	24	21.24	-	-	-	A	9154769	G	A	9154769	4	1	572	1	0	0	0	0	0	1	0	0	14125	1299	45	2	1960	2	SEMA5A	5	9154769	Nonsense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		9154769	171760491	19	51396										
NNT	0	genome.wustl.edu	37	chr5	43644857	43644857	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttgatgtgaaagatgactttGactttggtacgatgggtcat	12	4	1	5			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	43644857	43644857	G	C	SNP	NNT	ENST00000264663	human	ensembl	69_37n	1	known	missense	c.1243	p.D415H	1.000	tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	279	0	0	257	73	22.12	-	-	-	C	43644857	G	C	43644857	3	2	572	1	0	0	0	0	1	0	0	0	10582	1290	45	2	1273	2	NNT	5	43644857	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	34490088	43644857	137270403	20	51397										
RNF180	0	genome.wustl.edu	37	chr5	63621163	63621163	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gtgagccctgcttacggactCtggccaaagacaatccttca	9	13	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	63621163	63621163	C	A	SNP	RNF180	ENST00000389100	human	ensembl	69_37n	1	known	missense	c.1378	p.L460M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197	366	0	0	266	110	29.26	-	-	-	A	63621163	C	A	63621163	3	1	572	1	0	0	0	0	1	0	0	0	13550	912	32	2	1420	2	RNF180	5	63621163	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	19976306	63621163	117294097	21	51398										
RIOK2	0	genome.wustl.edu	37	chr5	96503693	96503693	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ccacatcaagagtgtcttctCtcctagaaaaaaaaggcgtc	7	11	3	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	96503693	96503693	C	T	SNP	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	missense	c.875	p.R292K	0.995	NULL	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	40	0	0	31	5	13.89	-	-	-	T	96503693	C	T	96503693	3	4	572	1	0	0	0	0	1	0	0	0	13464	913	32	2	823	2	RIOK2	5	96503693	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	32882530	96503693	84411567	22	51399										
TSSK1B	0	genome.wustl.edu	37	chr5	112770420	112770420	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttgcggtcgatgatcttgatCgccacattgaacttcaggcg	11	10	2	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	112770420	112770420	C	T	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	silent	c.117	p.A39	0.176	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	125	0	0	96	44	31.43	-	-	-	T	112770420	C	T	112770420	2	4	572	1	0	0	0	0	0	0	0	1	16764	871	31	1		1	TSSK1B	5	112770420	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	16266727	112770420	68144840	23	51400										
KCNN2	0	genome.wustl.edu	37	chr5	113831863	113831863	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttccacagcaccaccaacttCatcagagagtagctagaaga	7	12	2	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	113831863	113831863	C	T	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	1	known	missense	c.1724	p.S575L	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	69	0	0	50	24	32.43	-	-	-	T	113831863	C	T	113831863	3	4	572	1	0	0	0	0	1	0	0	0	8133	838	29	2	1754	2	KCNN2	5	113831863	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	1061443	113831863	67083397	24	51401										
CDC25C	0	genome.wustl.edu	37	chr5	137621494	137621494	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ctcagtcttgtggtcctgatGatgcatagggcagtagctct	12	9	3	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	137621494	137621494	G	T	SNP	CDC25C	ENST00000514017	human	ensembl	69_37n	-1	novel	nonsense	c.713	p.S238*	1.000	superfamily_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_start_codon:pseudogene:no_stop_codon	CDC25C	HGNC	ENSG00000158402	152	1	0.65	133	35	20.83	-	-	-	T	137621494	G	T	137621494	4	4	572	1	0	0	0	0	0	1	0	0	3093	1290	45	2	116	2	CDC25C	5	137621494	Nonsense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	23789631	137621494	43293766	25	51402										
MAPK9	0	genome.wustl.edu	37	chr5	179676088	179676088	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cgggccaggccaaagtcaagGatcttcagggtgcagtctga	14	10	4	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	179676088	179676088	G	A	SNP	MAPK9	ENST00000452135	human	ensembl	69_37n	-1	known	silent	c.501	p.I167	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748	213	0	0	201	48	19.28	-	-	-	A	179676088	G	A	179676088	2	1	572	1	0	0	0	0	0	0	0	1	9358	1164	41	2		2	MAPK9	5	179676088	Silent	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	42054594	179676088	1239172	26	51403										
NHLRC1	0	genome.wustl.edu	37	chr6	18121699	18121699	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	tagaatgagatgctgtgtccAgcacaagaagagaattctcc	10	8	1	4			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	18121699	18121699	A	G	SNP	NHLRC1	ENST00000340650	human	ensembl	69_37n	-1	known	missense	c.1139	p.L380P	1.000	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566	103	0	0	58	27	31.76	-	-	-	G	18121699	A	G	18121699	3	3	572	1	0	0	0	0	1	0	0	0	10477	188	7	5	52	5	NHLRC1	6	18121699	Missense_Mutation	SNP	A	TCGA-BH-A18J-01A-11D-A12B-09		18121699	152993368	27	51404										
ZNF192	0	genome.wustl.edu	37	chr6	28120897	28120897	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ggtaatatctactggaatccAgccacatggagagacagctg	11	9	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	28120897	28120897	A	T	SNP	ZNF192	ENST00000330236	human	ensembl	69_37n	1	known	missense	c.839	p.Q280L	0.118	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF192	HGNC	ENSG00000198315	143	0	0	95	32	25.2	-	-	-	T	28120897	A	T	28120897	3	4	572	1	0	0	0	0	1	0	0	0	17852	188	7	5	857	5	ZNF192	6	28120897	Missense_Mutation	SNP	A	TCGA-BH-A18J-01A-11D-A12B-09	9999198	28120897	142994170	28	51405										
USP45	0	genome.wustl.edu	37	chr6	99936655	99936655	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cttctgtatttcatctgtttCacatttttcttcacaaagtt	3	9	6	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	99936655	99936655	C	T	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.520	p.E174K	1.000	NULL	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	326	0	0	223	64	22.3	-	-	-	T	99936655	C	T	99936655	3	4	572	1	0	0	0	0	1	0	0	0	17173	835	29	2	1976	2	USP45	6	99936655	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	71815758	99936655	71178412	29	51406										
BEND3	0	genome.wustl.edu	37	chr6	107391941	107391941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cttctcaaagagctcgtacaCgtttagcaggtcccccgagg	10	13	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	107391941	107391941	C	A	SNP	BEND3	ENST00000369042	human	ensembl	69_37n	-1	known	missense	c.454	p.V152L	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409	232	0	0	168	61	26.64	-	-	-	A	107391941	C	A	107391941	3	1	572	1	0	0	0	0	1	0	0	0	1403	536	19	3	2036	3	BEND3	6	107391941	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	7455286	107391941	63723126	30	51407										
ROS1	0	genome.wustl.edu	37	chr6	117622168	117622168	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	tcatttatgactccactgttGtttgcttcatctctggactt	6	10	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	117622168	117622168	G	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.6702	p.N2234K	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	231	0	0	178	47	20.89	-	-	-	T	117622168	G	T	117622168	3	4	572	1	0	0	0	0	1	0	0	0	13617	1368	48	4	349	4	ROS1	6	117622168	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	10230227	117622168	53492899	31	51408										
TNRC18	0	genome.wustl.edu	37	chr7	5410036	5410036	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttggctcctcctctccagctCcagctctgcgatctcactta	6	17	3	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	5410036	5410036	C	G	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.4189	p.E1397Q	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	107	0	0	104	26	20	-	-	-	G	5410036	C	G	5410036	3	3	572	1	0	0	0	0	1	0	0	0	16434	864	30	2	4797	2	TNRC18	7	5410036	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		5410036	153728627	32	51409										
ZNF394	0	genome.wustl.edu	37	chr7	99091324	99091324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gggttgcactctgattgaagCgtttcccacagacggaacat	11	10	1	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	99091324	99091324	C	T	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.1514	p.R505H	0.158	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	404	0	0	370	116	23.87	-	-	-	T	99091324	C	T	99091324	3	4	572	1	0	0	0	0	1	0	0	0	17976	768	27	1	175	1	ZNF394	7	99091324	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	93681288	99091324	60047339	33	51410										
ENPP2	0	genome.wustl.edu	37	chr8	120608116	120608116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	acgagtttccgcagcataatGatccatcctatgtatttttc	6	10	0	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	8	120608116	120608116	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1099	p.H367Y	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	330	0	0	237	61	20.47	-	-	-	A	120608116	G	A	120608116	3	1	572	1	0	0	0	0	1	0	0	0	5167	1290	45	2	1787	2	ENPP2	8	120608116	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		120608116	25755906	34	51411										
RANBP6	0	genome.wustl.edu	37	chr9	6015273	6015273	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cacaaagttttttcctcatgCtagcatgtgtttctaactta	5	9	2	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	6015273	6015273	C	G	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.335	p.S112T	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	137	0	0	130	54	29.35	-	-	-	G	6015273	C	G	6015273	3	3	572	1	0	0	0	0	1	0	0	0	13114	797	28	4	2986	4	RANBP6	9	6015273	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		6015273	135198158	35	51412										
C9orf91	0	genome.wustl.edu	37	chr9	117396146	117396146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gacacagtggaaggatgccaGagtgtgattcaggtgctgtg	16	6	1	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	117396146	117396146	G	C	SNP	C9orf91	ENST00000374049	human	ensembl	69_37n	1	known	missense	c.576	p.Q192H	1.000	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	80	0	0	86	20	18.87	-	-	-	C	117396146	G	C	117396146	3	2	572	1	0	0	0	0	1	0	0	0	2530	933	33	2	591	2	C9orf91	9	117396146	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	111380873	117396146	23817285	36	51413										
ATRNL1	0	genome.wustl.edu	37	chr10	117075136	117075136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	aggacattgcattgaaggttCttcacggggaccaatgaagc	12	8	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	10	117075136	117075136	C	T	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	missense	c.2927	p.S976F	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	212	0	0	154	44	22.22	-	-	-	T	117075136	C	T	117075136	3	4	572	1	0	0	0	0	1	0	0	0	1211	913	32	2	2997	2	ATRNL1	10	117075136	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		117075136	18459611	37	51414										
NUP98	0	genome.wustl.edu	37	chr11	3707308	3707308	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gcacaccttcacactgcgctGagagatgggtgtagttaaga	12	9	1	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	3707308	3707308	G	A	SNP	NUP98	ENST00000524563	human	ensembl	69_37n	-1	known	nonsense	c.514	p.Q172*	1.000	pfam_Nup96	pfam_Nup96	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP98	HGNC	ENSG00000110713	122	0	0	103	13	11.21	-	-	-	A	3707308	G	A	3707308	4	1	572	1	0	0	0	0	0	1	0	0	10846	1294	45	2	851	2	NUP98	11	3707308	Nonsense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		3707308	131299208	38	51415										
ANO5	0	genome.wustl.edu	37	chr11	22271833	22271833	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttttgtctttcttggattttAcacagaaatgctattctttg	6	6	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	22271833	22271833	A	T	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	1	known	missense	c.929	p.Y310F	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	586	0	0	485	161	24.88	-	-	-	T	22271833	A	T	22271833	3	4	572	1	0	0	0	0	1	0	0	0	699	391	14	5	967	5	ANO5	11	22271833	Missense_Mutation	SNP	A	TCGA-BH-A18J-01A-11D-A12B-09	18564525	22271833	112734683	39	51416										
DTX4	0	genome.wustl.edu	37	chr11	58949648	58949648	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gggcccctacagctgccagtGacccgcaagaacatgccgcc	11	17	0	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	58949648	58949648	G	A	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	1	known	silent	c.648	p.V216	0.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	8	0	0	11	4	26.67	-	-	-	A	58949648	G	A	58949648	2	1	572	1	0	0	0	0	0	0	0	1	4832	1277	45	2		2	DTX4	11	58949648	Silent	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	36677815	58949648	76056868	40	51417										
SSH3	0	genome.wustl.edu	37	chr11	67077640	67077640	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cacctcttccgccagaacctGagggtggtggggaggagaag	16	10	1	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	67077640	67077640	G	C	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	missense	c.1513	p.E505Q	0.870	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	77	0	0	80	17	17.53	-	-	-	C	67077640	G	C	67077640	3	2	572	1	0	0	0	0	1	0	0	0	15277	1291	45	2	1563	2	SSH3	11	67077640	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	8127992	67077640	67928876	41	51418										
SLC37A2	0	genome.wustl.edu	37	chr11	124954753	124954753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	aactacattggccaggacggGattgccagctccataggtga	12	10	0	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	124954753	124954753	G	C	SNP	SLC37A2	ENST00000298280	human	ensembl	69_37n	1	known	missense	c.1072	p.D358H	0.453	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	139	0	0	66	38	36.54	-	-	-	C	124954753	G	C	124954753	3	2	572	1	0	0	0	0	1	0	0	0	14687	1161	41	2	1208	2	SLC37A2	11	124954753	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09	57877113	124954753	10051763	42	51419										
ABCD2	0	genome.wustl.edu	37	chr12	39947821	39947821	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	tttgggaattccagctagctGagattctagcttttgttttt	9	6	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	39947821	39947821	G	A	SNP	ABCD2	ENST00000308666	human	ensembl	69_37n	-1	known	nonsense	c.2116	p.Q706*	1.000	NULL	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD2	HGNC	ENSG00000173208	393	0	0	277	95	25.54	-	-	-	A	39947821	G	A	39947821	4	1	572	1	0	0	0	0	0	1	0	0	61	1299	45	2	110	2	ABCD2	12	39947821	Nonsense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		39947821	93904074	43	51420										
NELL2	0	genome.wustl.edu	37	chr12	44914000	44914000	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gcaaggcaggggccaacaatCaacttccccttgctacaagg	10	13	1	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	44914000	44914000	C	G	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	missense	c.2338	p.D780H	1.000	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	83	0	0	55	22	28.57	-	-	-	G	44914000	C	G	44914000	3	3	572	1	0	0	0	0	1	0	0	0	10406	826	29	2	270	2	NELL2	12	44914000	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	4966179	44914000	88937895	44	51421										
MLL2	0	genome.wustl.edu	37	chr12	49431434	49431434	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	gctaccagtgagctctccatCttgtctagctcatccccaga	7	15	4	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	49431434	49431434	C	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.9705	p.K3235N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	102	0	0	89	29	24.58	-	-	-	G	49431434	C	G	49431434	3	3	572	1	0	0	0	0	1	0	0	0	9692	912	32	2	6992	2	MLL2	12	49431434	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	4517434	49431434	84420461	45	51422										
PAN2	0	genome.wustl.edu	37	chr12	56718085	56718085	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cctgatttcatacctgcctcCagcacctcgataagcctgtg	7	15	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	56718085	56718085	C	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	nonsense	c.1921	p.G641*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	183	0	0	145	34	18.99	-	-	-	A	56718085	C	A	56718085	4	1	572	1	0	0	0	0	0	1	0	0	11487	603	21	4	1747	4	PAN2	12	56718085	Nonsense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	7286651	56718085	77133810	46	51423										
COG3	0	genome.wustl.edu	37	chr13	46050340	46050340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	actctcttttttcaagcttcCaattgaagacttgtgcagtt	6	9	2	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	13	46050340	46050340	C	T	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	missense	c.179	p.P60L	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	158	0	0	100	32	24.24	-	-	-	T	46050340	C	T	46050340	3	4	572	1	0	0	0	0	1	0	0	0	3689	594	21	4	185	4	COG3	13	46050340	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		46050340	69119538	47	51424										
MIA2	0	genome.wustl.edu	37	chr14	39717240	39717240	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttcccaaacagatactggatCaaaataatgtaattgaaaat	5	6	1	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	14	39717240	39717240	C	G	SNP	MIA2	ENST00000556784	human	ensembl	69_37n	1	known	missense	c.1459	p.Q487E	0.677	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526	89	0	0	49	16	24.62	-	-	-	G	39717240	C	G	39717240	3	3	572	1	0	0	0	0	1	0	0	0	9635	827	29	2	1476	2	MIA2	14	39717240	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		39717240	67632300	48	51425										
AGBL1	0	genome.wustl.edu	37	chr15	87531306	87531306	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttttcaagatgaaccttcttCtgcatgtctccccgtgagta	7	11	4	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	15	87531306	87531306	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	silent	c.3172	p.L1058	0.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	536	1	0.19	444	119	21.14	-	-	-	T	87531306	C	T	87531306	2	4	572	1	0	0	0	0	0	0	0	1	375	912	32	2		2	AGBL1	15	87531306	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		87531306	15000086	49	51426										
NOXO1	0	genome.wustl.edu	37	chr16	2029831	2029831	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cctccctcccggccttggccCggggccgcctcctccaggta	11	21	0	0			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2029831	2029831	C	T	SNP	NOXO1	ENST00000397280	human	ensembl	69_37n	-1	known	silent	c.675	p.P225	0.000	pfscan_SH3_domain	pfam_SH3_domain,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NOXO1	HGNC	ENSG00000196408	21	0	0	25	11	30.56	-	-	-	T	2029831	C	T	2029831	2	4	572	1	0	0	0	0	0	0	0	1	10633	639	23	1		1	NOXO1	16	2029831	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		2029831	88324922	50	51427										
TBC1D24	0	genome.wustl.edu	37	chr16	2548280	2548280	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ccatgcagagaacttccgctCggagatcgtcagcgtgaggg	14	11	1	3			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2548280	2548280	C	A	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	1	known	nonsense	c.1025	p.S342*	1.000	smart_TLDc	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	87	0	0	68	25	26.88	-	-	-	A	2548280	C	A	2548280	4	1	572	1	0	0	0	0	0	1	0	0	15706	893	31	3	1013	3	TBC1D24	16	2548280	Nonsense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	518449	2548280	87806473	51	51428										
HLF	0	genome.wustl.edu	37	chr17	53342935	53342935	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	tccctgctggagaacccgctGaagctcccccttcaccacga	8	18	1	2			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	53342935	53342935	G	A	SNP	HLF	ENST00000226067	human	ensembl	69_37n	1	known	silent	c.90	p.L30	1.000	NULL	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	73	0	0	43	16	27.12	-	-	-	A	53342935	G	A	53342935	2	1	572	1	0	0	0	0	0	0	0	1	7265	1277	45	2		2	HLF	17	53342935	Silent	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		53342935	27852275	52	51429										
BPTF	0	genome.wustl.edu	37	chr17	65909295	65909295	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cctagaccgacctttggcatCacttggaggtatgtacttta	9	10	1	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	65909295	65909295	C	A	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	silent	c.5673	p.I1891	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	71	0	0	46	25	35.21	-	-	-	A	65909295	C	A	65909295	2	1	572	1	0	0	0	0	0	0	0	1	1503	816	29	2		2	BPTF	17	65909295	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	12566360	65909295	15285915	53	51430										
ASXL3	0	genome.wustl.edu	37	chr18	31320321	31320321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	agagagctaggatagaagatGatcagtcaacccggaacata	11	7	2	4			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	31320321	31320321	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.2953	p.D985N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	103	0	0	93	29	23.77	-	-	-	A	31320321	G	A	31320321	3	1	572	1	0	0	0	0	1	0	0	0	1072	1290	45	2	2995	2	ASXL3	18	31320321	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		31320321	46756927	54	51431										
TCF4	0	genome.wustl.edu	37	chr18	52899811	52899811	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	ttcttgtcctccgaagatttCgtgtcttgcaggttctcatc	8	11	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	52899811	52899811	C	T	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	silent	c.1884	p.T628	0.905	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	256	0	0	186	74	28.46	-	-	-	T	52899811	C	T	52899811	2	4	572	1	0	0	0	0	0	0	0	1	15790	871	31	1		1	TCF4	18	52899811	Silent	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	21579490	52899811	25177437	55	51432										
NPHS1	0	genome.wustl.edu	37	chr19	36322218	36322218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	cgtggagctctgagtgtcccGctctcctgtccactggctct	11	15	3	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	19	36322218	36322218	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	missense	c.3367	p.R1123W	0.069	NULL	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	70	0	0	52	16	23.19	-	-	-	A	36322218	G	A	36322218	3	1	572	1	0	0	0	0	1	0	0	0	10654	1086	38	1	374	1	NPHS1	19	36322218	Missense_Mutation	SNP	G	TCGA-BH-A18J-01A-11D-A12B-09		36322218	22806765	56	51433										
EIF1AX	0	genome.wustl.edu	37	chrX	20148714	20148714	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	aggaccaaatgtatcagtttCattgattttagctaaggaca	8	6	2	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	20148714	20148714	C	A	SNP	EIF1AX	ENST00000379607	human	ensembl	69_37n	-1	known	nonsense	c.349	p.E117*	1.000	superfamily_NA-bd_OB-fold-like	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	-	no_errors	EIF1AX	HGNC	ENSG00000173674	565	0	0	518	142	21.52	-	-	-	A	20148714	C	A	20148714	4	1	572	1	0	0	0	0	0	1	0	0	5027	835	29	2	93	2	EIF1AX	23	20148714	Nonsense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09		20148714	135121846	57	51434										
ODZ1	0	genome.wustl.edu	37	chrX	123539084	123539084	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551724137931034	32	1.41961923756625e-12	3.84539231174302	3.74371126503828	3.88670023696682	0.00182995456117995	0.0414467378930249	24	agtgacacgcagggaaccatCtggattcacccgataggtac	11	11	2	1			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	123539084	123539084	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.5188	p.D1730H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	108	0	0	95	37	28.03	-	-	-	G	123539084	C	G	123539084	3	3	572	1	0	0	0	0	1	0	0	0	10907	913	32	2	3034	2	ODZ1	23	123539084	Missense_Mutation	SNP	C	TCGA-BH-A18J-01A-11D-A12B-09	103390370	123539084	31731476	58	51435										
HP1BP3	0	genome.wustl.edu	37	chr1	21097424	21097424	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	actaacaattgtgtaataccTgtttgatgactcctctattt	5	8	1	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21097424	21097424	T	A	SNP	HP1BP3	ENST00000312239	human	ensembl	69_37n	-1	known	missense	c.653	p.Q218L	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5	-	no_errors	HP1BP3	HGNC	ENSG00000127483	434	0	0	260	118	31.22	-	-	-	A	21097424	T	A	21097424	3	1	573	1	0	0	0	0	1	0	0	0	7379	1594	55	5	1040	5	HP1BP3	1	21097424	Missense_Mutation	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09		21097424	228153197	1	51436										
RAP1GAP	0	genome.wustl.edu	37	chr1	21928254	21928254	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ggctcctgtgagacgtgcccGctgtctggggtcttctgacc	14	13	3	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21928254	21928254	G	A	SNP	RAP1GAP	ENST00000290101	human	ensembl	69_37n	-1	known	silent	c.1767	p.S589	0.998	NULL	pfam_Rap_GAP,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP	-	no_errors	RAP1GAP	HGNC	ENSG00000076864	60	0	0	57	21	26.58	-	-	-	A	21928254	G	A	21928254	2	1	573	1	0	0	0	0	0	0	0	1	13120	1078	38	1		1	RAP1GAP	1	21928254	Silent	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	830830	21928254	227322367	2	51437										
TTLL7	0	genome.wustl.edu	37	chr1	84408343	84408343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ctgagatggaagtttgtcacCatttcttatcaaagaaatcc	7	8	3	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	84408343	84408343	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.526	p.G176S	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	57	0	0	40	6	13.04	-	-	-	T	84408343	C	T	84408343	3	4	573	1	0	0	0	0	1	0	0	0	16829	594	21	4	2197	4	TTLL7	1	84408343	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	62480089	84408343	164842278	3	51438										
ITGA10	0	genome.wustl.edu	37	chr1	145539030	145539030	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ggcctcatcatctcagccctCcttccagctgtggcccatgg	9	17	3	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	145539030	145539030	C	T	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	silent	c.2970	p.L990	0.992	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	150	0	0	190	77	28.84	-	-	-	T	145539030	C	T	145539030	2	4	573	1	0	0	0	0	0	0	0	1	7927	842	30	2		2	ITGA10	1	145539030	Silent	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	61130687	145539030	103711591	4	51439										
SLC27A3	0	genome.wustl.edu	37	chr1	153747796	153747796	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cactcctcccgggtttctgcTctccgcccgtgtggagtggt	12	15	2	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	153747796	153747796	T	C	SNP	SLC27A3	ENST00000271857	human	ensembl	69_37n	1	novel	silent	c.207	p.A69	0.478	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554	19	0	0	12	17	58.62	-	-	-	C	153747796	T	C	153747796	2	2	573	1	0	0	0	0	0	0	0	1	14616	1566	54	5		5	SLC27A3	1	153747796	Silent	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09	8208766	153747796	95502825	5	51440										
SPTA1	0	genome.wustl.edu	37	chr1	158644209	158644209	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tgaaatcggtcatcgtaagaGtcaatctcatgctgtggcca	10	9	3	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	158644209	158644209	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.1260	p.D420	0.999	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	198	0	0	270	46	14.56	-	-	-	A	158644209	G	A	158644209	2	1	573	1	0	0	0	0	0	0	0	1	15207	1020	36	4		4	SPTA1	1	158644209	Silent	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	4896413	158644209	90606412	6	51441										
FAM5B	0	genome.wustl.edu	37	chr1	177199036	177199037	+	Frame_Shift_Ins	INS	-	-	T													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ggtggcagtgtggcactcggINStttagagggcttcggccggc							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	177199036	177199037	-	T	INS	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	frame_shift_ins	c.24_25	p.R9fs	0.497:0.446	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	22	0	0	38	5	11.63	-	-	-	T	177199037	-	T	177199036	7	5	573	1	0	1	1	0	0	0	0	0	5638	1248	44	0	26	0	FAM5B	1	177199036	Frame_Shift_Ins	INS	-	TCGA-BH-A18K-01A-11D-A12B-09	18554827	177199036	72051585	7	51442										
TIMM17A	0	genome.wustl.edu	37	chr1	201924671	201924671	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	caagatggaggagtacgcgcGagagccttggtgagcttcac	15	9	1	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	201924671	201924671	G	C	SNP	TIMM17A	ENST00000367287	human	ensembl	69_37n	1	known	missense	c.17	p.R6P	0.223	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	-	no_errors	TIMM17A	HGNC	ENSG00000134375	233	0	0	377	144	27.53	-	-	-	C	201924671	G	C	201924671	3	2	573	1	0	0	0	0	1	0	0	0	16003	1058	37	3	19	3	TIMM17A	1	201924671	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	24725635	201924671	47325950	8	51443										
PROM2	0	genome.wustl.edu	37	chr2	95944749	95944749	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gcagagctgaagaaggcagtGgcccagcagccggaaggggt	18	9	0	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	95944749	95944749	G	A	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	silent	c.1131	p.V377	0.387	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	24	0	0	12	8	40	-	-	-	A	95944749	G	A	95944749	2	1	573	1	0	0	0	0	0	0	0	1	12637	1335	47	4		4	PROM2	2	95944749	Silent	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09		95944749	147254624	9	51444										
PLCD4	0	genome.wustl.edu	37	chr2	219492900	219492900	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	atctgctcttctcataacacCtacctagtgggggaccagct	8	13	3	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	219492900	219492900	C	T	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	silent	c.921	p.T307	0.990	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	232	0	0	152	67	30.59	-	-	-	T	219492900	C	T	219492900	2	4	573	1	0	0	0	0	0	0	0	1	12107	668	24	4		4	PLCD4	2	219492900	Silent	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	123548151	219492900	23706473	10	51445										
GOLGA4	0	genome.wustl.edu	37	chr3	37356982	37356982	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cacggagaaaactgaaggcaGaaatggatgaacaaataaaa	10	5	0	4			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	37356982	37356982	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.1306	p.E436K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	336	0	0	295	59	16.67	-	-	-	A	37356982	G	A	37356982	3	1	573	1	0	0	0	0	1	0	0	0	6607	943	33	2	1418	2	GOLGA4	3	37356982	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09		37356982	160665448	11	51446										
CADPS	0	genome.wustl.edu	37	chr3	62535703	62535703	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gatacatggcctggacccacAggatgcggtcttgttcatcg	12	11	2	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	62535703	62535703	A	C	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.1841	p.L614R	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	72	0	0	69	22	24.18	-	-	-	C	62535703	A	C	62535703	3	2	573	1	0	0	0	0	1	0	0	0	2595	188	7	5	2373	5	CADPS	3	62535703	Missense_Mutation	SNP	A	TCGA-BH-A18K-01A-11D-A12B-09	25178721	62535703	135486727	12	51447										
PPP4R2	0	genome.wustl.edu	37	chr3	73096423	73096423	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	aacttcagctcctgagccaaGaggtcctcccaaccctaatg	7	15	1	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	73096423	73096423	G	C	SNP	PPP4R2	ENST00000356692	human	ensembl	69_37n	1	known	missense	c.203	p.R68T	1.000	pfam_PPP4R2	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605	198	0	0	190	54	22.13	-	-	-	C	73096423	G	C	73096423	3	2	573	1	0	0	0	0	1	0	0	0	12481	942	33	2	213	2	PPP4R2	3	73096423	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	10560720	73096423	124926007	13	51448										
CEP97	0	genome.wustl.edu	37	chr3	101477254	101477254	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	agcacattgtctgcttaactGatgaaataaggaggtgggtc	12	6	1	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	101477254	101477254	G	A	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	1	known	missense	c.1804	p.D602N	0.982	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	36	0	0	23	6	20.69	-	-	-	A	101477254	G	A	101477254	3	1	573	1	0	0	0	0	1	0	0	0	3292	1290	45	2	1838	2	CEP97	3	101477254	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	28380831	101477254	96545176	14	51449										
TOPBP1	0	genome.wustl.edu	37	chr3	133337228	133337228	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gtcatcccaaatgatctgttCattttgggaaggctctgtgt	10	8	4	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	133337228	133337228	C	G	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.3421	p.E1141Q	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	137	0	0	130	34	20.73	-	-	-	G	133337228	C	G	133337228	3	3	573	1	0	0	0	0	1	0	0	0	16465	835	29	2	1179	2	TOPBP1	3	133337228	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	31859974	133337228	64685202	15	51450										
CHRD	0	genome.wustl.edu	37	chr3	184104637	184104637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ctgctcctctctgcagagacGaacggtgatctgtgacccgg	12	13	2	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	184104637	184104637	G	A	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	1	known	missense	c.2201	p.R734Q	1.000	pfam_VWF_C,smart_VWF_C,pirsf_Chordin,pfscan_VWF_C	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	14	0	0	8	5	38.46	-	-	-	A	184104637	G	A	184104637	3	1	573	1	0	0	0	0	1	0	0	0	3401	1058	37	1	2267	1	CHRD	3	184104637	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	50767409	184104637	13917793	16	51451										
PIK3R1	0	genome.wustl.edu	37	chr5	67591111	67591112	+	In_Frame_Ins	INS	-	-	GAC													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gtatgaacagcattaaaccaINSgaccttatccagctgagaaa							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	67591111	67591112	-	GAC	INS	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_ins	c.1704_1705	p.569in_frame_insD	0.152:1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	316	0	0	274	123	30.98	-	-	-	GAC	67591112	-	GAC	67591111	7	5	573	1	0	1	1	0	0	0	0	0	11992	175	7	0	1880	0	PIK3R1	5	67591111	In_Frame_Ins	INS	-	TCGA-BH-A18K-01A-11D-A12B-09		67591111	113324149	17	51452										
EPB41L4A	0	genome.wustl.edu	37	chr5	111595650	111595650	+	Frame_Shift_Del	DEL	T	T	-													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	acaccaaccggagttaatccTaagaaatactcagacttgtt							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	111595650	111595650	T	-	DEL	EPB41L4A	ENST00000261486	human	ensembl	69_37n	-1	known	frame_shift_del	c.669	p.G224fs	0.997	pfam_FERM_PH-like_C,pfscan_FERM_domain,prints_Ez/rad/moesin	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	406	0	0	456	65	12.24	-	-	-	-	111595650	T	-	111595650	7	5	573	1	0	1	0	1	0	0	0	0	5192	1519	53	0	1455	0	EPB41L4A	5	111595650	Frame_Shift_Del	DEL	T	TCGA-BH-A18K-01A-11D-A12B-09	44004539	111595650	69319610	18	51453										
SEMA6A	0	genome.wustl.edu	37	chr5	115823840	115823842	+	In_Frame_Del	DEL	GAA	GAA	-													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tactccactgctatttccctGaagaagaagtagatataatc							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	115823840	115823842	GAA	-	DEL	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	in_frame_del	c.708_706	p.F236in_frame_del	1.000:1.000:1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	250	0	0	261	113	29.66	-	-	-	-	115823842	GAA	-	115823840	7	5	573	1	0	1	0	1	0	0	0	0	14127	1281	45	0	2428	0	SEMA6A	5	115823840	In_Frame_Del	DEL	GAA	TCGA-BH-A18K-01A-11D-A12B-09	4228190	115823840	65091420	19	51454										
PCDHA2	0	genome.wustl.edu	37	chr5	140176351	140176351	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gcgcgcagtggacgctgactCaggctacaacgcgtggcttt	14	12	1	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	140176351	140176351	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.1802	p.S601L	0.121	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	88	0	0	121	19	13.57	-	-	-	T	140176351	C	T	140176351	3	4	573	1	0	0	0	0	1	0	0	0	11597	838	29	2	1804	2	PCDHA2	5	140176351	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	24352511	140176351	40738909	20	51455										
HFE	0	genome.wustl.edu	37	chr6	26092916	26092916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tcctctttcctgtcaagtgcCtcctttggtgaaggtgacac	9	12	2	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	26092916	26092916	C	T	SNP	HFE	ENST00000357618	human	ensembl	69_37n	1	known	missense	c.620	p.P207L	0.395	pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	HFE	HGNC	ENSG00000010704	213	1	0.47	177	106	37.46	-	-	-	T	26092916	C	T	26092916	3	4	573	1	0	0	0	0	1	0	0	0	7132	681	24	4	634	4	HFE	6	26092916	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09		26092916	145022151	21	51456										
ROS1	0	genome.wustl.edu	37	chr6	117710620	117710620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gcagagggtgcagctgggagGatgagccaaagatgaccaag	17	7	0	4			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	117710620	117710620	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.1652	p.S551F	0.014	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	153	1	0.65	133	19	12.5	-	-	-	A	117710620	G	A	117710620	3	1	573	1	0	0	0	0	1	0	0	0	13617	1174	41	2	5519	2	ROS1	6	117710620	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	91617704	117710620	53404447	22	51457										
FGFR1	0	genome.wustl.edu	37	chr8	38271457	38271457	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tggttggaggtcaaggccacGatgcggtccaggtcttccac	14	11	2	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	38271457	38271457	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.2364	p.I788	0.027	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	43	0	0	16	12	42.86	-	-	-	A	38271457	G	A	38271457	2	1	573	1	0	0	0	0	0	0	0	1	5909	1048	37	1		1	FGFR1	8	38271457	Silent	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09		38271457	108092565	23	51458										
CPNE3	0	genome.wustl.edu	37	chr8	87568396	87568396	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ttgatgaaaccagacaagctAtagttaatgcctccaggctg	9	9	0	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	87568396	87568396	A	G	SNP	CPNE3	ENST00000198765	human	ensembl	69_37n	1	known	missense	c.1321	p.I441V	0.998	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE3	HGNC	ENSG00000085719	241	0	0	181	134	42.54	-	-	-	G	87568396	A	G	87568396	3	3	573	1	0	0	0	0	1	0	0	0	3843	449	16	5	1375	5	CPNE3	8	87568396	Missense_Mutation	SNP	A	TCGA-BH-A18K-01A-11D-A12B-09	49296939	87568396	58795626	24	51459										
LRP4	0	genome.wustl.edu	37	chr11	46896381	46896381	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ccaggaacacatctgtgtaaTagacctttccatccacgctg	7	13	1	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	46896381	46896381	T	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.4199	p.Y1400C	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	98	0	0	62	55	47.01	-	-	-	C	46896381	T	C	46896381	3	2	573	1	0	0	0	0	1	0	0	0	9025	1406	49	5	1562	5	LRP4	11	46896381	Missense_Mutation	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09		46896381	88110135	25	51460										
SLC22A25	0	genome.wustl.edu	37	chr11	62996780	62996780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tatacccagccatccacacaGggctctgtatctggctcact	7	15	3	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	62996780	62996780	G	A	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	silent	c.345	p.P115	1.000	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	187	0	0	134	124	48.06	-	-	-	A	62996780	G	A	62996780	2	1	573	1	0	0	0	0	0	0	0	1	14543	987	35	4		4	SLC22A25	11	62996780	Silent	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09	16100399	62996780	72009736	26	51461										
TYR	0	genome.wustl.edu	37	chr11	88911241	88911241	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	gaatgctgtccaccgtggagCggggacaggagtccctgtgg	17	10	0	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	88911241	88911241	C	G	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	missense	c.120	p.S40R	0.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	95	0	0	95	15	13.64	-	-	-	G	88911241	C	G	88911241	3	3	573	1	0	0	0	0	1	0	0	0	16910	767	27	3	122	3	TYR	11	88911241	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	25914461	88911241	46095275	27	51462										
CPNE8	0	genome.wustl.edu	37	chr12	39087515	39087515	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cagttttgcaccaaatcctaGagctggaaacattttatcac	6	10	1	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	12	39087515	39087515	G	C	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	missense	c.1087	p.L363V	0.998	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	326	0	0	331	64	16.2	-	-	-	C	39087515	G	C	39087515	3	2	573	1	0	0	0	0	1	0	0	0	3848	933	33	2	631	2	CPNE8	12	39087515	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09		39087515	94764380	28	51463										
SETD1A	0	genome.wustl.edu	37	chr16	30977152	30977152	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cctgagtaccccccacctccTccaccacccccgcacatcta	3	24	1	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	16	30977152	30977152	T	A	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	silent	c.1950	p.P650	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	98	0	0	96	32	25	-	-	-	A	30977152	T	A	30977152	2	1	573	1	0	0	0	0	0	0	0	1	14218	1538	54	5		5	SETD1A	16	30977152	Silent	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09		30977152	59377601	29	51464										
MYO15A	0	genome.wustl.edu	37	chr17	18065989	18065989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cagcatagagcttcgggccaTgttggtgagcatagggtggg	17	7	0	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	18065989	18065989	T	C	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.9608	p.M3203T	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	41	0	0	34	13	27.66	-	-	-	C	18065989	T	C	18065989	3	2	573	1	0	0	0	0	1	0	0	0	10135	1464	51	5	9830	5	MYO15A	17	18065989	Missense_Mutation	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09		18065989	63129221	30	51465										
GGNBP2	0	genome.wustl.edu	37	chr17	34937779	34937779	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ttatttttataatagatgacCgtggaaaaagtacagggtat	9	3	0	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	34937779	34937779	C	T	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	1	known	silent	c.1026	p.T342	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	232	1	0.43	182	56	23.53	-	-	-	T	34937779	C	T	34937779	2	4	573	1	0	0	0	0	0	0	0	1	6411	639	23	1		1	GGNBP2	17	34937779	Silent	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	16871790	34937779	46257431	31	51466										
ASB16	0	genome.wustl.edu	37	chr17	42255078	42255078	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tgggtggaggcggtgctcccAgagctgtggaaggtatgttt	18	6	0	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	42255078	42255078	A	T	SNP	ASB16	ENST00000293414	human	ensembl	69_37n	1	known	silent	c.1164	p.P388	0.454	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB16	HGNC	ENSG00000161664	118	0	0	133	33	19.88	-	-	-	T	42255078	A	T	42255078	2	4	573	1	0	0	0	0	0	0	0	1	1024	175	7	5		5	ASB16	17	42255078	Silent	SNP	A	TCGA-BH-A18K-01A-11D-A12B-09	7317299	42255078	38940132	32	51467										
SOX9	0	genome.wustl.edu	37	chr17	70117908	70117908	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cgcgcaggaagctcgcggacCagtacccgcacttgcacaac	11	16	0	0			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	70117908	70117908	C	T	SNP	SOX9	ENST00000245479	human	ensembl	69_37n	1	known	nonsense	c.376	p.Q126*	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	17	0	0	6	6	50	-	-	-	T	70117908	C	T	70117908	4	4	573	1	0	0	0	0	0	1	0	0	15047	595	21	4	378	4	SOX9	17	70117908	Nonsense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	27862830	70117908	11077302	33	51468										
CYTH1	0	genome.wustl.edu	37	chr17	76676295	76676297	+	In_Frame_Del	DEL	CTT	CTT	-													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	atgcacttaatccactcctcCttctcctcgggcgtcggagc							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	76676295	76676297	CTT	-	DEL	CYTH1	ENST00000361101	human	ensembl	69_37n	-1	known	in_frame_del	c.1095_1093	p.K365in_frame_del	1.000:1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH1	HGNC	ENSG00000108669	125	0	0	129	28	17.83	-	-	-	-	76676297	CTT	-	76676295	7	5	573	1	0	1	0	1	0	0	0	0	4234	680	24	0	109	0	CYTH1	17	76676295	In_Frame_Del	DEL	CTT	TCGA-BH-A18K-01A-11D-A12B-09	6558387	76676295	4518915	34	51469										
AZU1	0	genome.wustl.edu	37	chr19	831801	831802	+	In_Frame_Ins	INS	-	-	CTT													0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ccctgtggccgaggccctgaINScttcttcacccgagtggcgc							TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	831801	831802	-	CTT	INS	AZU1	ENST00000233997	human	ensembl	69_37n	1	known	in_frame_ins	c.680_681	p.230in_frame_insF	0.168:0.216	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	AZU1	HGNC	ENSG00000172232	9	0	0	4	2	33.33	-	-	-	CTT	831802	-	CTT	831801	7	5	573	1	0	1	1	0	0	0	0	0	1247	275	10	0	698	0	AZU1	19	831801	In_Frame_Ins	INS	-	TCGA-BH-A18K-01A-11D-A12B-09		831801	58297182	35	51470										
ZNF90	0	genome.wustl.edu	37	chr19	20229605	20229605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	cgctcctcaacacttactatAcataagataagtcatactga	4	11	2	2			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	20229605	20229605	A	G	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	missense	c.1242	p.I414M	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	115	0	0	107	47	30.52	-	-	-	G	20229605	A	G	20229605	3	3	573	1	0	0	0	0	1	0	0	0	18292	381	14	5	1256	5	ZNF90	19	20229605	Missense_Mutation	SNP	A	TCGA-BH-A18K-01A-11D-A12B-09	19397804	20229605	38899378	36	51471										
ZNF569	0	genome.wustl.edu	37	chr19	37904255	37904255	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	tcattacactcataaggtttCtctctagtatgaattttctg	5	8	5	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	37904255	37904255	C	G	SNP	ZNF569	ENST00000316950	human	ensembl	69_37n	-1	known	missense	c.1305	p.E435D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	318	0	0	328	70	17.59	-	-	-	G	37904255	C	G	37904255	3	3	573	1	0	0	0	0	1	0	0	0	18096	912	32	2	759	2	ZNF569	19	37904255	Missense_Mutation	SNP	C	TCGA-BH-A18K-01A-11D-A12B-09	17674650	37904255	21224728	37	51472										
ZNF415	0	genome.wustl.edu	37	chr19	53611669	53611669	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ttctccttagtatggataatTtgatgtctgaagaggtttgg	11	4	2	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	53611669	53611669	T	C	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	silent	c.1773	p.Q591	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	353	1	0.28	295	702	70.41	-	-	-	C	53611669	T	C	53611669	2	2	573	1	0	0	0	0	0	0	0	1	17988	1838	64	5		5	ZNF415	19	53611669	Silent	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09	15707414	53611669	5517314	38	51473										
SYS1	0	genome.wustl.edu	37	chr20	43992225	43992225	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	ccgctgctgatcctgtcgcaGatcgtcctcatgcagaccgt	10	15	1	3			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	20	43992225	43992225	G	T	SNP	SYS1	ENST00000243918	human	ensembl	69_37n	1	known	missense	c.54	p.Q18H	1.000	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	-	no_errors	SYS1	HGNC	ENSG00000204070	19	0	0	24	7	22.58	-	-	-	T	43992225	G	T	43992225	3	4	573	1	0	0	0	0	1	0	0	0	15556	933	33	2	56	2	SYS1	20	43992225	Missense_Mutation	SNP	G	TCGA-BH-A18K-01A-11D-A12B-09		43992225	19033295	39	51474										
ATRX	0	genome.wustl.edu	37	chrX	76940008	76940008	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.175	7	0.130471807157154	2.17878787878788	4.56507936507936	1.28392857142857	1	1	0	acaactcctttcgaccaaggTtgcgtagaatgcatttcttg	8	10	1	1			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	X	76940008	76940008	T	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.740	p.N247S	1.000	superfamily_Znf_FYVE_PHD	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	96	0	0	81	55	40.44	-	-	-	C	76940008	T	C	76940008	3	2	573	1	0	0	0	0	1	0	0	0	1212	1725	60	5	6846	5	ATRX	23	76940008	Missense_Mutation	SNP	T	TCGA-BH-A18K-01A-11D-A12B-09		76940008	78330552	40	51475										
ASH1L	0	genome.wustl.edu	37	chr1	155450526	155450527	+	Frame_Shift_Ins	INS	-	-	T													0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ccgaggttttcttccttttcINSttttttttaatggtttggac							TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	1	155450526	155450527	-	T	INS	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2135_2134	p.R712fs	1.000:1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	111	0	0	186	22	10.58	-	-	-	T	155450527	-	T	155450526	7	5	574	1	0	1	1	0	0	0	0	0	1045	913	32	0	6863	0	ASH1L	1	155450526	Frame_Shift_Ins	INS	-	TCGA-BH-A18L-01A-32D-A12B-09		155450526	93800095	1	51476										
CCDC19	0	genome.wustl.edu	37	chr1	159846491	159846491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	attttccttttcctttctgcGccactctctgtctgcaacct	4	15	3	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	1	159846491	159846491	G	A	SNP	CCDC19	ENST00000368099	human	ensembl	69_37n	-1	known	missense	c.1207	p.R403C	1.000	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085	222	0	0	296	59	16.57	-	-	-	A	159846491	G	A	159846491	3	1	574	1	0	0	0	0	1	0	0	0	2821	1087	38	1	460	1	CCDC19	1	159846491	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	4395965	159846491	89404130	2	51477										
AIDA	0	genome.wustl.edu	37	chr1	222876531	222876531	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	agaattattgtgttgagcttGggcctccttttgtagatgtc	11	6	0	3			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	1	222876531	222876531	G	A	SNP	AIDA	ENST00000340020	human	ensembl	69_37n	-1	known	nonsense	c.139	p.Q47*	1.000	pfam_AIDA,superfamily_AIDA_N	pfam_AIDA,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063	553	0	0	721	219	23.2	-	-	-	A	222876531	G	A	222876531	4	1	574	1	0	0	0	0	0	1	0	0	423	1357	47	4	817	4	AIDA	1	222876531	Nonsense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	63030040	222876531	26374090	3	51478										
OR2T3	0	genome.wustl.edu	37	chr1	248637260	248637260	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gtctccctctataagacgctCatgtacctgtgctgcatcct	7	14	3	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	1	248637260	248637260	C	A	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	silent	c.609	p.L203	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	359	0	0	411	70	14.49	-	-	-	A	248637260	C	A	248637260	2	1	574	1	0	0	0	0	0	0	0	1	11096	813	29	2		2	OR2T3	1	248637260	Silent	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	25760729	248637260	613361	4	51479										
FAM98A	0	genome.wustl.edu	37	chr2	33809886	33809886	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gtccaaatccagaatgattaTactgataacctccatgctgg	7	10	0	3			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	2	33809886	33809886	T	G	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.1514	p.Y505S	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	292	0	0	155	120	43.48	-	-	-	G	33809886	T	G	33809886	3	3	574	1	0	0	0	0	1	0	0	0	5702	1406	49	5	46	5	FAM98A	2	33809886	Missense_Mutation	SNP	T	TCGA-BH-A18L-01A-32D-A12B-09		33809886	209389487	5	51480										
MYRIP	0	genome.wustl.edu	37	chr3	40192554	40192554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ctcaggcttctgagggcccaAtctctggaatggttctacaa	10	11	4	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	3	40192554	40192554	A	T	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.348	p.Q116H	1.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	90	0	0	53	9	14.29	-	-	-	T	40192554	A	T	40192554	3	4	574	1	0	0	0	0	1	0	0	0	10172	98	4	5	358	5	MYRIP	3	40192554	Missense_Mutation	SNP	A	TCGA-BH-A18L-01A-32D-A12B-09		40192554	157829876	6	51481										
ANKH	0	genome.wustl.edu	37	chr5	14758638	14758638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ggtacaggaaggcccttctcGtcttgctccccaccgactcg	10	16	2	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	5	14758638	14758638	G	A	SNP	ANKH	ENST00000284268	human	ensembl	69_37n	-1	known	missense	c.383	p.T128M	1.000	pfam_ANKH	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122	255	0	0	284	38	11.76	-	-	-	A	14758638	G	A	14758638	3	1	574	1	0	0	0	0	1	0	0	0	627	1145	40	1	1135	1	ANKH	5	14758638	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		14758638	166156622	7	51482										
FAM169A	0	genome.wustl.edu	37	chr5	74078857	74078857	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	aaaaggctgcaattttaattCttcatctaaaacttcactag	4	8	4	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	5	74078857	74078857	C	A	SNP	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	nonsense	c.1363	p.E455*	1.000	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	146	0	0	186	30	13.89	-	-	-	A	74078857	C	A	74078857	4	1	574	1	0	0	0	0	0	1	0	0	5527	922	32	2	657	2	FAM169A	5	74078857	Nonsense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	59320219	74078857	106836403	8	51483										
FER	0	genome.wustl.edu	37	chr5	108290582	108290582	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	aaacctggtgaatatgtcctTtctgtatattctgatggaca	8	7	2	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	5	108290582	108290582	T	C	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	silent	c.1482	p.L494	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	195	0	0	222	31	12.2	-	-	-	C	108290582	T	C	108290582	2	2	574	1	0	0	0	0	0	0	0	1	5859	1828	64	5		5	FER	5	108290582	Silent	SNP	T	TCGA-BH-A18L-01A-32D-A12B-09	34211725	108290582	72624678	9	51484										
TRPC7	0	genome.wustl.edu	37	chr5	135587470	135587470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	cgtgctgtgaaggaggccacGaagatggacagcatcccgaa	14	10	0	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	5	135587470	135587470	G	A	SNP	TRPC7	ENST00000502753	human	ensembl	69_37n	-1	novel	missense	c.1279	p.R427C	0.992	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPC7	HGNC	ENSG00000069018	68	0	0	36	40	52.63	-	-	-	A	135587470	G	A	135587470	3	1	574	1	0	0	0	0	1	0	0	0	16680	1049	37	1	1170	1	TRPC7	5	135587470	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	27296888	135587470	45327790	10	51485										
ZNF391	0	genome.wustl.edu	37	chr6	27368399	27368399	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ttccaaagggacatggatccCcaatatctaggaaaaactcc	7	11	1	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	6	27368399	27368399	C	G	SNP	ZNF391	ENST00000244576	human	ensembl	69_37n	1	known	missense	c.250	p.P84A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF391	HGNC	ENSG00000124613	125	0	0	141	24	14.55	-	-	-	G	27368399	C	G	27368399	3	3	574	1	0	0	0	0	1	0	0	0	17975	623	22	4	252	4	ZNF391	6	27368399	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		27368399	143746668	11	51486										
MEOX2	0	genome.wustl.edu	37	chr7	15652133	15652133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gctctgatgggagaagtgttCcctttttcacattcaccagt	9	10	3	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	7	15652133	15652133	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	69_37n	-1	known	missense	c.794	p.G265E	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	256	0	0	121	143	53.76	-	-	-	T	15652133	C	T	15652133	3	4	574	1	0	0	0	0	1	0	0	0	9545	855	30	2	124	2	MEOX2	7	15652133	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		15652133	143486530	12	51487										
AKR1B1	0	genome.wustl.edu	37	chr7	134135680	134135680	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ccagcgagagggcacatgtcAtcattgccagccacaaggca	11	13	2	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	7	134135680	134135680	A	T	SNP	AKR1B1	ENST00000426422	human	ensembl	69_37n	-1	known	missense	c.264	p.D88E	0.000	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR1B1	HGNC	ENSG00000085662	68	0	0	14	26	65	-	-	-	T	134135680	A	T	134135680	3	4	574	1	0	0	0	0	1	0	0	0	466	232	8	5		5	AKR1B1	7	134135680	Missense_Mutation	SNP	A	TCGA-BH-A18L-01A-32D-A12B-09	118483547	134135680	25002983	13	51488										
PIWIL2	0	genome.wustl.edu	37	chr8	22136963	22136963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	acccatcccagtgccaggctGtacggatgccaggctgttgg	13	13	0	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	8	22136963	22136963	G	A	SNP	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	missense	c.64	p.V22I	0.048	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	139	0	0	49	20	28.57	-	-	-	A	22136963	G	A	22136963	3	1	574	1	0	0	0	0	1	0	0	0	12032	1377	48	4	66	4	PIWIL2	8	22136963	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		22136963	124227059	14	51489										
ROR2	0	genome.wustl.edu	37	chr9	94487328	94487328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ctttgtagactttcccaaacCggtcctctcccagctcctcc	5	18	1	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	9	94487328	94487328	C	T	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	missense	c.1448	p.R483Q	0.981	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	127	0	0	50	31	37.35	-	-	-	T	94487328	C	T	94487328	3	4	574	1	0	0	0	0	1	0	0	0	13613	652	23	1	1387	1	ROR2	9	94487328	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		94487328	46726103	15	51490										
NEK6	0	genome.wustl.edu	37	chr9	127089686	127089686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	cggtgaccttggtctgggccGcttcttcagctctgagacca	12	13	4	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	9	127089686	127089686	G	A	SNP	NEK6	ENST00000373600	human	ensembl	69_37n	1	known	missense	c.686	p.R229H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408	193	0	0	92	39	29.55	-	-	-	A	127089686	G	A	127089686	3	1	574	1	0	0	0	0	1	0	0	0	10400	1087	38	1	791	1	NEK6	9	127089686	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	32602358	127089686	14123745	16	51491										
EHMT1	0	genome.wustl.edu	37	chr9	140672361	140672361	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gggccaccactctcggaggaCgacaagctgcagggtgcagc	15	13	1	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	9	140672361	140672361	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.2046	p.D682	0.201	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	62	0	0	39	7	15.22	-	-	-	T	140672361	C	T	140672361	2	4	574	1	0	0	0	0	0	0	0	1	5018	535	19	1		1	EHMT1	9	140672361	Silent	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	13582675	140672361	541070	17	51492										
PLXDC2	0	genome.wustl.edu	37	chr10	20357104	20357104	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	tgttgttctttgcagagagtGaatctgtccttcgattttcc	9	8	2	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	10	20357104	20357104	G	T	SNP	PLXDC2	ENST00000377252	human	ensembl	69_37n	1	known	silent	c.477	p.V159	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	-	no_errors	PLXDC2	HGNC	ENSG00000120594	270	0	0	173	113	39.51	-	-	-	T	20357104	G	T	20357104	2	4	574	1	0	0	0	0	0	0	0	1	12192	1277	45	2		2	PLXDC2	10	20357104	Silent	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		20357104	115177643	18	51493										
JMJD1C	0	genome.wustl.edu	37	chr10	64974081	64974081	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	agtctctggaggtggacttcGcttatgcagcttatcttcca	10	10	2	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	10	64974081	64974081	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	nonsense	c.1846	p.R616*	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	211	0	0	113	105	47.95	-	-	-	A	64974081	G	A	64974081	4	1	574	1	0	0	0	0	0	1	0	0	8004	1095	38	1	5852	1	JMJD1C	10	64974081	Nonsense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	44616977	64974081	70560666	19	51494										
EIF3A	0	genome.wustl.edu	37	chr10	120795555	120795555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	tccattatcttgagacttaaCgtcgtactgtggtccatcca	7	11	1	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	10	120795555	120795555	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.4145	p.R1382H	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	234	0	0	220	39	15.06	-	-	-	T	120795555	C	T	120795555	3	4	574	1	0	0	0	0	1	0	0	0	5047	536	19	1	7	1	EIF3A	10	120795555	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	55821474	120795555	14739192	20	51495										
RCOR2	0	genome.wustl.edu	37	chr11	63683048	63683048	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	aggcttgcactccggaattaCggcctggtaattggttccaa	11	10	0	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	11	63683048	63683048	C	A	SNP	RCOR2	ENST00000301459	human	ensembl	69_37n	-1	known	missense	c.163	p.V55L	0.931	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771	30	0	0	18	7	28	-	-	-	A	63683048	C	A	63683048	3	1	574	1	0	0	0	0	1	0	0	0	13266	536	19	3	1452	3	RCOR2	11	63683048	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		63683048	71323468	21	51496										
TMEM132D	0	genome.wustl.edu	37	chr12	129559467	129559467	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gcagcaatgataggccacttGaatttggggtcttggtggat	14	6	1	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	12	129559467	129559467	G	T	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2253	p.F751L	0.882	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	198	0	0	123	28	18.42	-	-	-	T	129559467	G	T	129559467	3	4	574	1	0	0	0	0	1	0	0	0	16142	1281	45	2	1050	2	TMEM132D	12	129559467	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		129559467	4292428	22	51497										
OXGR1	0	genome.wustl.edu	37	chr13	97639726	97639726	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	tctccaaagatccagttttcGccactggcatagtagtgaat	8	10	1	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	13	97639726	97639726	G	A	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	silent	c.288	p.G96	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	178	1	0.56	46	54	53.47	-	-	-	A	97639726	G	A	97639726	2	1	574	1	0	0	0	0	0	0	0	1	11405	1074	38	1		1	OXGR1	13	97639726	Silent	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		97639726	17530152	23	51498										
SDR39U1	0	genome.wustl.edu	37	chr14	24910979	24910980	+	Frame_Shift_Ins	INS	-	-	T													0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	aggcggctgccgattacctcINStttttggaaggtttcattcc							TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	14	24910979	24910980	-	T	INS	SDR39U1	ENST00000399395	human	ensembl	69_37n	-1	known	frame_shift_ins	c.229_228	p.E76fs	1.000:0.994	pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445	200	0	0	164	39	19.21	-	-	-	T	24910980	-	T	24910979	7	5	574	1	0	1	1	0	0	0	0	0	14060	922	32	0	664	0	SDR39U1	14	24910979	Frame_Shift_Ins	INS	-	TCGA-BH-A18L-01A-32D-A12B-09		24910979	82438561	24	51499										
ACYP1	0	genome.wustl.edu	37	chr14	75520314	75520314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ttgtccttgcactgtgccccGgtcagtgttctggacccagc	11	14	2	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	14	75520314	75520314	G	A	SNP	ACYP1	ENST00000238618	human	ensembl	69_37n	-1	known	missense	c.133	p.R45W	0.994	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,prints_Acylphosphatase,pfscan_Acylphosphatase-like	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,prints_Acylphosphatase,pfscan_Acylphosphatase-like	-	no_errors	ACYP1	HGNC	ENSG00000119640	291	1	0.34	267	36	11.88	-	-	-	A	75520314	G	A	75520314	3	1	574	1	0	0	0	0	1	0	0	0	228	1115	39	1	170	1	ACYP1	14	75520314	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	50609335	75520314	31829226	25	51500										
NEK9	0	genome.wustl.edu	37	chr14	75551376	75551376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ttgctgtctgagttcctttgGaatgcatccccacctgtccg	9	13	1	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	14	75551376	75551376	G	A	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	missense	c.2831	p.S944F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	276	1	0.36	222	56	20.07	-	-	-	A	75551376	G	A	75551376	3	1	574	1	0	0	0	0	1	0	0	0	10403	1174	41	2	112	2	NEK9	14	75551376	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	31062	75551376	31798164	26	51501										
ATG2B	0	genome.wustl.edu	37	chr14	96792113	96792113	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ttctgaagtgacttcttaaaCcatggtcctctttcttgatc	6	10	4	3			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	14	96792113	96792113	C	G	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.2310	p.W770C	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	259	0	0	147	122	45.35	-	-	-	G	96792113	C	G	96792113	3	3	574	1	0	0	0	0	1	0	0	0	1098	508	18	4	4038	4	ATG2B	14	96792113	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	21240737	96792113	10557427	27	51502										
C14orf80	0	genome.wustl.edu	37	chr14	105958575	105958575	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ctctgtcctggctcttggccCgaggacctgtgcccgagcag	13	15	2	0			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	14	105958575	105958575	C	G	SNP	C14orf80	ENST00000392523	human	ensembl	69_37n	1	known	missense	c.358	p.R120G	0.002	NULL	NULL	-	no_errors	C14orf80	HGNC	ENSG00000185347	69	0	0	26	18	40.91	-	-	-	G	105958575	C	G	105958575	3	3	574	1	0	0	0	0	1	0	0	0	1793	644	23	3	396	3	C14orf80	14	105958575	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09	9166462	105958575	1390965	28	51503										
PLIN1	0	genome.wustl.edu	37	chr15	90212738	90212738	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ggcagatacttaccaggggcAccacgcctgggatccacatg	12	13	0	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	15	90212738	90212738	A	T	SNP	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	missense	c.764	p.V255E	0.933	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	44	0	0	30	4	11.76	-	-	-	T	90212738	A	T	90212738	3	4	574	1	0	0	0	0	1	0	0	0	12163	159	6	5	820	5	PLIN1	15	90212738	Missense_Mutation	SNP	A	TCGA-BH-A18L-01A-32D-A12B-09		90212738	12318654	29	51504										
MYBBP1A	0	genome.wustl.edu	37	chr17	4442756	4442756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gtgctttcttcttggccccaCtctgaagcaggctgggactc	11	13	3	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	17	4442756	4442756	C	T	SNP	MYBBP1A	ENST00000381556	human	ensembl	69_37n	-1	known	missense	c.3941	p.S1314N	0.000	NULL	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382	105	1	0.94	53	6	10.17	-	-	-	T	4442756	C	T	4442756	3	4	574	1	0	0	0	0	1	0	0	0	10080	565	20	4	89	4	MYBBP1A	17	4442756	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		4442756	76752454	30	51505										
PER1	0	genome.wustl.edu	37	chr17	8047052	8047054	+	In_Frame_Del	DEL	CCA	CCA	-													0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gtagtggctggtggggtgggCcagggggtggagggtggcac							TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	17	8047052	8047054	CCA	-	DEL	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	in_frame_del	c.2604_2602	p.W868in_frame_del	1.000:1.000:0.998	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	31	0	0	3	2	33.33	-	-	-	-	8047054	CCA	-	8047052	7	5	574	1	0	1	0	1	0	0	0	0	11802	740	26	0	1288	0	PER1	17	8047052	In_Frame_Del	DEL	CCA	TCGA-BH-A18L-01A-32D-A12B-09	3604296	8047052	73148158	31	51506										
MUC16	0	genome.wustl.edu	37	chr19	9062672	9062672	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gagctggtttcttccacagaGgattgactaggccataacat	10	9	1	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	19	9062672	9062672	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.24774	p.S8258	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	172	0	0	50	20	28.57	-	-	-	T	9062672	G	T	9062672	2	4	574	1	0	0	0	0	0	0	0	1	10045	987	35	4		4	MUC16	19	9062672	Silent	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		9062672	50066311	32	51507										
CNOT3	0	genome.wustl.edu	37	chr19	54647208	54647208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	cagccaacgcgaaccagaaaGaaaagtatgaggctgaccta	10	10	0	4			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	19	54647208	54647208	G	A	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.124	p.E42K	1.000	pfam_Not_N,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	125	0	0	100	21	17.36	-	-	-	A	54647208	G	A	54647208	3	1	574	1	0	0	0	0	1	0	0	0	3650	943	33	2	134	2	CNOT3	19	54647208	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	45584536	54647208	4481775	33	51508										
CDH26	0	genome.wustl.edu	37	chr20	58563973	58563973	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ttccagcctttggattatgaGactcgcccagcgcaaagcct	9	13	0	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	20	58563973	58563973	G	C	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.1038	p.E346D	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	95	0	0	96	35	26.52	-	-	-	C	58563973	G	C	58563973	3	2	574	1	0	0	0	0	1	0	0	0	3139	933	33	2	1072	2	CDH26	20	58563973	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		58563973	4461547	34	51509										
GRIK1	0	genome.wustl.edu	37	chr21	30934056	30934056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	ggtggactccatcagcagcgCgtagtctgtggtgagcactc	14	11	2	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	21	30934056	30934056	C	T	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2251	p.A751T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	289	1	0.34	138	81	36.99	-	-	-	T	30934056	C	T	30934056	3	4	574	1	0	0	0	0	1	0	0	0	6824	768	27	1	683	1	GRIK1	21	30934056	Missense_Mutation	SNP	C	TCGA-BH-A18L-01A-32D-A12B-09		30934056	17195839	35	51510										
APOBEC3G	0	genome.wustl.edu	37	chr22	39475005	39475005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	taatagacccatcctttctcGtcggaataccgtctggctgt	8	12	2	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	22	39475005	39475005	G	A	SNP	APOBEC3G	ENST00000407997	human	ensembl	69_37n	1	known	missense	c.86	p.R29H	0.000	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713	238	0	0	17	84	83.17	-	-	-	A	39475005	G	A	39475005	3	1	574	1	0	0	0	0	1	0	0	0	796	1145	40	1	92	1	APOBEC3G	22	39475005	Missense_Mutation	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09		39475005	11829561	36	51511										
ARHGAP36	0	genome.wustl.edu	37	chrX	130218365	130218365	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	gttgttgaggcttgctgccaAttcattgaaaaacatggtaa	10	6	1	2			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	X	130218365	130218365	A	G	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	1	known	silent	c.732	p.Q244	0.004	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	134	0	0	68	15	17.86	-	-	-	G	130218365	A	G	130218365	2	3	574	1	0	0	0	0	0	0	0	1	885	98	4	5		5	ARHGAP36	23	130218365	Silent	SNP	A	TCGA-BH-A18L-01A-32D-A12B-09		130218365	25052195	37	51512										
FAM127B	0	genome.wustl.edu	37	chrX	134185956	134185956	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	2	0.999962424367031	0.631941455015067	1.81683168316832	0.382490880667014	1	1	0	aggaacgtcaccttcagggcGtcgttggagaacgtgttctc	13	10	3	1			TCGA-BH-A18L-01A-32D-A12B-09	TCGA-BH-A18L-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	883cd3c9-2681-4822-8b22-29149a027514	dc231f7a-c0b8-4639-9885-06ec9a0405a0	X	134185956	134185956	G	A	SNP	FAM127B	ENST00000370775	human	ensembl	69_37n	-1	known	silent	c.183	p.D61	0.304	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950	126	0	0	53	15	22.06	-	-	-	A	134185956	G	A	134185956	2	1	574	1	0	0	0	0	0	0	0	1	5472	1136	40	1		1	FAM127B	23	134185956	Silent	SNP	G	TCGA-BH-A18L-01A-32D-A12B-09	3967591	134185956	21084604	38	51513										
PGBD5	0	genome.wustl.edu	37	chr1	230492718	230492718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	ggctggaccttgtagagcccGtgcgtggtctggctggagcg	18	10	1	1			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	1	230492718	230492718	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	silent	c.771	p.H257	0.361	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	91	0	0	91	12	11.65	-	-	-	A	230492718	G	A	230492718	2	1	575	1	0	0	0	0	0	0	0	1	11858	1136	40	1		1	PGBD5	1	230492718	Silent	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09		230492718	18757903	1	51514										
OR2T27	0	genome.wustl.edu	37	chr1	248813454	248813454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	aagaggctgacaaccaccatGtgtgaggagcaggtggccac	14	10	0	3			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	1	248813454	248813454	G	T	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.732	p.H244Q	0.451	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	131	0	0	151	21	12.21	-	-	-	T	248813454	G	T	248813454	3	4	575	1	0	0	0	0	1	0	0	0	11094	1368	48	4	224	4	OR2T27	1	248813454	Missense_Mutation	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09	18320736	248813454	437167	2	51515										
GLI2	0	genome.wustl.edu	37	chr2	121747788	121747788	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	ggtgcctccccagccgcctcCgcaggacgcaggtggggccc	15	18	0	0			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	2	121747788	121747788	C	T	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.4298	p.P1433L	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	37	0	0	20	5	19.23	-	-	-	T	121747788	C	T	121747788	3	4	575	1	0	0	0	0	1	0	0	0	6490	652	23	1	4348	1	GLI2	2	121747788	Missense_Mutation	SNP	C	TCGA-BH-A18M-01A-11D-A12B-09		121747788	121451585	3	51516										
FBLN2	0	genome.wustl.edu	37	chr3	13671349	13671349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	agtgctgggcctcgccaggcCgcctgtgccagcacacgtgt	14	15	0	0			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	3	13671349	13671349	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	missense	c.2872	p.R958C	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	27	0	0	34	5	12.82	-	-	-	T	13671349	C	T	13671349	3	4	575	1	0	0	0	0	1	0	0	0	5745	652	23	1	1612	1	FBLN2	3	13671349	Missense_Mutation	SNP	C	TCGA-BH-A18M-01A-11D-A12B-09		13671349	184351081	4	51517										
CDCP1	0	genome.wustl.edu	37	chr3	45127233	45127234	+	Frame_Shift_Del	DEL	CT	CT	-													0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	gggagaaggtgtacggttcaCtctcagactcaggaggggag							TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	3	45127233	45127234	CT	-	DEL	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	frame_shift_del	c.2408_2407	p.S803fs	0.001:0.000	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	244	1	0.4	234	49	17.19	-	-	-	-	45127234	CT	-	45127233	7	5	575	1	0	1	0	1	0	0	0	0	3122	565	20	0	106	0	CDCP1	3	45127233	Frame_Shift_Del	DEL	CT	TCGA-BH-A18M-01A-11D-A12B-09	31455884	45127233	152895197	5	51518										
ADH7	0	genome.wustl.edu	37	chr4	100340221	100340221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	gagcatcttggctgatggagGaactcctacaaccacgctgg	12	11	1	1			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	4	100340221	100340221	G	A	SNP	ADH7	ENST00000209665	human	ensembl	69_37n	-1	known	missense	c.919	p.P307S	0.868	pfam_ADH_C	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344	156	1	0.63	104	31	22.79	-	-	-	A	100340221	G	A	100340221	3	1	575	1	0	0	0	0	1	0	0	0	313	1174	41	2	253	2	ADH7	4	100340221	Missense_Mutation	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09		100340221	90814055	6	51519										
MAP3K1	0	genome.wustl.edu	37	chr5	56178571	56178571	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	aaaagtgcaaagagaagatgGaagctgaagaagaagaagct	13	3	0	6			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	5	56178571	56178571	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3544	p.E1182*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	124	0	0	148	19	11.38	-	-	-	T	56178571	G	T	56178571	4	4	575	1	0	0	0	0	0	1	0	0	9314	1175	41	2	3598	2	MAP3K1	5	56178571	Nonsense_Mutation	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09		56178571	124736689	7	51520										
RAPGEF6	0	genome.wustl.edu	37	chr5	130970657	130970657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	aaggtcaaccagcctcacctCgggagtccgctcgggtggct	13	14	2	0			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	5	130970657	130970657	C	T	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.67	p.E23K	0.982	superfamily_cNMP-bd-like	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	105	0	0	87	16	15.53	-	-	-	T	130970657	C	T	130970657	3	4	575	1	0	0	0	0	1	0	0	0	13131	893	31	1	5336	1	RAPGEF6	5	130970657	Missense_Mutation	SNP	C	TCGA-BH-A18M-01A-11D-A12B-09	74792086	130970657	49944603	8	51521										
FAM86B1	0	genome.wustl.edu	37	chr8	12040906	12040906	+	RNA	DEL	C	C	-													0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	gtctgatttatgatgattttCttgagaaccagaactgctgg							TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	8	12040906	12040906	C	-	DEL	FAM86B1	ENST00000524484	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM86B1	HGNC	ENSG00000186523	8	0	0	4	2	33.33	-	-	-	-	12040906	C	-	12040906	6	5	575	0	1	1	0	1	0	0	0	0	5689	928	32	0		0	FAM86B1	8	12040906	RNA	DEL	C	TCGA-BH-A18M-01A-11D-A12B-09		12040906	134323116	9	51522										
VWF	0	genome.wustl.edu	37	chr12	6091157	6091157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	tgcactcctccttcctgcagGctgagggtaggacaaggcca	12	13	0	1			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	12	6091157	6091157	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.7082	p.A2361V	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	61	0	0	46	11	19.3	-	-	-	A	6091157	G	A	6091157	3	1	575	1	0	0	0	0	1	0	0	0	17343	1217	42	4	1403	4	VWF	12	6091157	Missense_Mutation	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09		6091157	127760738	10	51523										
ENOX1	0	genome.wustl.edu	37	chr13	43930084	43930084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	tttcagccagcagagcggctTcgtgctccgagtagtgcatt	12	11	1	1			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	13	43930084	43930084	T	C	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	missense	c.794	p.E265G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	40	0	0	33	7	17.5	-	-	-	C	43930084	T	C	43930084	3	2	575	1	0	0	0	0	1	0	0	0	5163	1783	62	5	1177	5	ENOX1	13	43930084	Missense_Mutation	SNP	T	TCGA-BH-A18M-01A-11D-A12B-09		43930084	71239794	11	51524										
FAM123B	0	genome.wustl.edu	37	chrX	63411027	63411027	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	ctgcatcaggcaggtactttGatctttcttggagcaggttc	11	9	3	1			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	X	63411027	63411027	G	C	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.2140	p.Q714E	0.999	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	109	0	0	75	20	21.05	-	-	-	C	63411027	G	C	63411027	3	2	575	1	0	0	0	0	1	0	0	0	5463	1299	45	2	1271	2	FAM123B	23	63411027	Missense_Mutation	SNP	G	TCGA-BH-A18M-01A-11D-A12B-09		63411027	91859533	12	51525										
TCEAL3	0	genome.wustl.edu	37	chrX	102864406	102864408	+	In_Frame_Del	DEL	GAT	GAT	-													0.0769230769230769	1	0.831963519012659	1.61038961038961	11.2727272727273	0	1	1	0	aggcatctgagcagtgaggaGatgatgagagaatgtggaga							TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	X	102864406	102864408	GAT	-	DEL	TCEAL3	ENST00000243286	human	ensembl	69_37n	1	known	in_frame_del	c.414_416	p.M140in_frame_del	0.998:0.991:0.986	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507	1203	9	0.74	953	172	15.29	-	-	-	-	102864408	GAT	-	102864406	7	5	575	1	0	1	0	1	0	0	0	0	15767	933	33	0	416	0	TCEAL3	23	102864406	In_Frame_Del	DEL	GAT	TCGA-BH-A18M-01A-11D-A12B-09	39453379	102864406	52406154	13	51526										
C1orf86	0	genome.wustl.edu	37	chr1	2125495	2125495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaggatcagctccgggctcAccgtgcgcagtagctcggcc	13	16	2	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	1	2125495	2125495	A	G	SNP	C1orf86	ENST00000378545	human	ensembl	69_37n	-1	known	missense	c.449	p.V150A	0.000	NULL	NULL	-	no_errors	C1orf86	HGNC	ENSG00000162585	18	0	0	16	6	27.27	-	-	-	G	2125495	A	G	2125495	3	3	576	1	0	0	0	0	1	0	0	0	2083	159	6	5	654	5	C1orf86	1	2125495	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09		2125495	247125126	1	51527										
PANK4	0	genome.wustl.edu	37	chr1	2452259	2452259	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actcagggtcggaatccttcTggtacacgaaggcctcatgg	12	11	3	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	1	2452259	2452259	T	C	SNP	PANK4	ENST00000378466	human	ensembl	69_37n	-1	known	missense	c.509	p.Q170R	1.000	pfam_Type_II_PanK,pirsf_PanK_long,tigrfam_Type_II_PanK	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	329	0	0	180	63	25.93	-	-	-	C	2452259	T	C	2452259	3	2	576	1	0	0	0	0	1	0	0	0	11492	1580	55	5	1876	5	PANK4	1	2452259	Missense_Mutation	SNP	T	TCGA-BH-A18N-01A-11D-A12B-09	326764	2452259	246798362	2	51528										
PTCHD2	0	genome.wustl.edu	37	chr1	11589972	11589972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggtcttcggcattattggcGtcaaccgcactcggcaggtg	13	11	2	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	1	11589972	11589972	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	missense	c.3058	p.V1020I	0.674	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	133	0	0	95	27	22.13	-	-	-	A	11589972	G	A	11589972	3	1	576	1	0	0	0	0	1	0	0	0	12813	1145	40	1	3112	1	PTCHD2	1	11589972	Missense_Mutation	SNP	G	TCGA-BH-A18N-01A-11D-A12B-09	9137713	11589972	237660649	3	51529										
SLAMF7	0	genome.wustl.edu	37	chr1	160720169	160720169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctcctgctcagtctctttgTactggggctatttctttggt	9	11	3	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	1	160720169	160720169	T	C	SNP	SLAMF7	ENST00000368043	human	ensembl	69_37n	1	known	missense	c.725	p.V242A	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF7	HGNC	ENSG00000026751	839	1	0.12	460	143	23.68	-	-	-	C	160720169	T	C	160720169	3	2	576	1	0	0	0	0	1	0	0	0	14458	1638	57	5	739	5	SLAMF7	1	160720169	Missense_Mutation	SNP	T	TCGA-BH-A18N-01A-11D-A12B-09	149130197	160720169	88530452	4	51530										
NT5C1B	0	genome.wustl.edu	37	chr2	18767558	18767558	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcttctaggctcatctatggAtggagccttggtggatgggc	15	8	3	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	2	18767558	18767558	A	T	SNP	NT5C1B	ENST00000359846	human	ensembl	69_37n	-1	known	missense	c.400	p.S134T	0.019	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013	294	0	0	153	56	26.67	-	-	-	T	18767558	A	T	18767558	3	4	576	1	0	0	0	0	1	0	0	0	10759	333	12	5	1460	5	NT5C1B	2	18767558	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09		18767558	224431815	5	51531										
SLC9A4	0	genome.wustl.edu	37	chr2	103141501	103141501	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	agaccctgtcctacaacaaaTacaacctcaaaccccaaaca							TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	2	103141501	103141501	T	-	DEL	SLC9A4	ENST00000295269	human	ensembl	69_37n	1	known	frame_shift_del	c.1837	p.Y613fs	0.999	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	195	0	0	61	68	50.75	-	-	-	-	103141501	T	-	103141501	7	5	576	1	0	1	0	1	0	0	0	0	14805	1406	49	0	1875	0	SLC9A4	2	103141501	Frame_Shift_Del	DEL	T	TCGA-BH-A18N-01A-11D-A12B-09	84373943	103141501	140057872	6	51532										
HECW2	0	genome.wustl.edu	37	chr2	197171902	197171902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcccctgccccatcaatagCattggtattttcctcaggcc	6	16	2	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	2	197171902	197171902	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.2641	p.A881T	0.201	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	290	0	0	124	118	48.56	-	-	-	T	197171902	C	T	197171902	3	4	576	1	0	0	0	0	1	0	0	0	7094	710	25	4	2149	4	HECW2	2	197171902	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09	94030401	197171902	46027471	7	51533										
PVRL3	0	genome.wustl.edu	37	chr3	110831214	110831214	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctctacaactgtaactgtGttaggtaggtatgcttgaat	9	7	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	3	110831214	110831214	G	C	SNP	PVRL3	ENST00000486596	human	ensembl	69_37n	1	novel	missense	c.496	p.V166L	0.993	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon	PVRL3	HGNC	ENSG00000177707	271	0	0	141	71	33.49	-	-	-	C	110831214	G	C	110831214	3	2	576	1	0	0	0	0	1	0	0	0	12924	1364	48	4	504	4	PVRL3	3	110831214	Missense_Mutation	SNP	G	TCGA-BH-A18N-01A-11D-A12B-09		110831214	87191216	8	51534										
MAP3K1	0	genome.wustl.edu	37	chr5	56177058	56177059	+	Frame_Shift_Ins	INS	-	-	GTCA													0	0	1	0	0	0	1	1	0	ctgaattttatcctcatattINSgtcagtactgatgtttcaca							TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	5	56177058	56177059	-	GTCA	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.2328_2329	p.T778fs	0.997:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	642	0	0	485	202	29.4	-	-	-	GTCA	56177059	-	GTCA	56177058	7	5	576	1	0	1	1	0	0	0	0	0	9314	1800	63	0	2378	0	MAP3K1	5	56177058	Frame_Shift_Ins	INS	-	TCGA-BH-A18N-01A-11D-A12B-09		56177058	124738202	9	51535										
TMCO6	0	genome.wustl.edu	37	chr5	140024286	140024286	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actgaagtagtaggccagagTttggagctgctgcatctgct	13	8	1	2			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	5	140024286	140024286	T	G	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	1	known	missense	c.1347	p.S449R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	116	1	0.85	79	44	35.77	-	-	-	G	140024286	T	G	140024286	3	3	576	1	0	0	0	0	1	0	0	0	16095	1722	60	5	1371	5	TMCO6	5	140024286	Missense_Mutation	SNP	T	TCGA-BH-A18N-01A-11D-A12B-09	83847228	140024286	40890974	10	51536										
PCDHA1	0	genome.wustl.edu	37	chr5	140167950	140167950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtcgcgggcccagaggcggCgctggtggatgtcaacgtgt	18	10	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	5	140167950	140167950	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.2075	p.A692V	0.005	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	47	0	0	46	9	15.25	-	-	-	T	140167950	C	T	140167950	3	4	576	1	0	0	0	0	1	0	0	0	11592	768	27	1	2077	1	PCDHA1	5	140167950	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09	143664	140167950	40747310	11	51537										
PCDHGB6	0	genome.wustl.edu	37	chr5	140789281	140789281	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccctggcggtgtcgtcataCgtgtcagtgagcgcgcagag	15	12	2	2			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	5	140789281	140789281	C	G	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	nonsense	c.1512	p.Y504*	0.255	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	31	0	0	23	15	39.47	-	-	-	G	140789281	C	G	140789281	4	3	576	1	0	0	0	0	0	1	0	0	11640	547	19	3	1514	3	PCDHGB6	5	140789281	Nonsense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09	621331	140789281	40125979	12	51538										
GNMT	0	genome.wustl.edu	37	chr6	42931381	42931381	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcctgggcgacttcaagccTtacaagccaggccaaaccta	9	14	1	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	6	42931381	42931381	T	C	SNP	GNMT	ENST00000372808	human	ensembl	69_37n	1	known	silent	c.825	p.P275	0.649	pirsf_Gly/Sar_N_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pirsf_Gly/Sar_N_MeTrfase	-	no_errors	GNMT	HGNC	ENSG00000124713	151	0	0	105	18	14.63	-	-	-	C	42931381	T	C	42931381	2	2	576	1	0	0	0	0	0	0	0	1	6592	1596	56	5		5	GNMT	6	42931381	Silent	SNP	T	TCGA-BH-A18N-01A-11D-A12B-09		42931381	128183686	13	51539										
SYNE1	0	genome.wustl.edu	37	chr6	152804248	152804248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctcaagtttccgttgtatcGtgtttgctgtttcctcgtgg	11	9	1	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	6	152804248	152804248	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.1322	p.T441M	0.995	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	720	0	0	338	89	20.84	-	-	-	A	152804248	G	A	152804248	3	1	576	1	0	0	0	0	1	0	0	0	15537	1145	40	1	25676	1	SYNE1	6	152804248	Missense_Mutation	SNP	G	TCGA-BH-A18N-01A-11D-A12B-09	109872867	152804248	18310819	14	51540										
TULP4	0	genome.wustl.edu	37	chr6	158922767	158922767	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtaccgtgaacatccctaTtgcaccgatccacagctcgg	8	14	0	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	6	158922767	158922767	T	C	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.2072	p.I691T	0.769	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	132	0	0	76	24	24	-	-	-	C	158922767	T	C	158922767	3	2	576	1	0	0	0	0	1	0	0	0	16873	1493	52	5	2122	5	TULP4	6	158922767	Missense_Mutation	SNP	T	TCGA-BH-A18N-01A-11D-A12B-09	6118519	158922767	12192300	15	51541										
MGAM	0	genome.wustl.edu	37	chr7	141721528	141721528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgaccagaagaagcaacaAtcgtgttttgtaagttttgg	11	5	0	3			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	7	141721528	141721528	A	G	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.701	p.N234S	0.248	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	319	0	0	92	131	58.74	-	-	-	G	141721528	A	G	141721528	3	3	576	1	0	0	0	0	1	0	0	0	9612	101	4	5	719	5	MGAM	7	141721528	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09		141721528	17417135	16	51542										
MLL3	0	genome.wustl.edu	37	chr7	151845844	151845844	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gggcacaggatcaggtttaaGggaagtgcccaatttcttta							TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	7	151845844	151845844	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.13339	p.K4448fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	185	0	0	73	59	42.75	-	-	-	-	151845844	G	-	151845844	7	5	576	1	0	1	0	1	0	0	0	0	9693	1000	35	0	1599	0	MLL3	7	151845844	Frame_Shift_Del	DEL	G	TCGA-BH-A18N-01A-11D-A12B-09	10124316	151845844	7292819	17	51543										
NAV2	0	genome.wustl.edu	37	chr11	19955784	19955784	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagccccagcagcaatacaAccatcccaacactgccacgg	6	18	1	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	11	19955784	19955784	A	G	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.2063	p.N688S	0.594	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	135	0	0	56	66	54.1	-	-	-	G	19955784	A	G	19955784	3	3	576	1	0	0	0	0	1	0	0	0	10256	43	2	5	2099	5	NAV2	11	19955784	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09		19955784	115050732	18	51544										
CPT1A	0	genome.wustl.edu	37	chr11	68579905	68579905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatttcacaggattacttacGccgtttccagagtccgattg	9	10	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	11	68579905	68579905	G	A	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	missense	c.281	p.A94V	0.984	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	228	1	0.44	127	39	23.49	-	-	-	A	68579905	G	A	68579905	3	1	576	1	0	0	0	0	1	0	0	0	3861	1101	38	1	2148	1	CPT1A	11	68579905	Missense_Mutation	SNP	G	TCGA-BH-A18N-01A-11D-A12B-09	48624121	68579905	66426611	19	51545										
CUL5	0	genome.wustl.edu	37	chr11	107925435	107925435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agggacaattttgagaaggcAtacttggattcaacagagag	12	5	1	2			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	11	107925435	107925435	A	G	SNP	CUL5	ENST00000532782	human	ensembl	69_37n	1	novel	missense	c.304	p.I102V	0.999	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CUL5	HGNC	ENSG00000166266	194	0	0	39	50	56.18	-	-	-	G	107925435	A	G	107925435	3	3	576	1	0	0	0	0	1	0	0	0	4090	204	8	5	637	5	CUL5	11	107925435	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09	39345530	107925435	27081081	20	51546										
IFNG	0	genome.wustl.edu	37	chr12	68552013	68552013	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctaagaaaagagttccattAtccgctacatctgaatgacc	6	11	1	4			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	12	68552013	68552013	A	G	SNP	IFNG	ENST00000229135	human	ensembl	69_37n	-1	known	silent	c.141	p.D47	0.000	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537	339	0	0	128	112	46.47	-	-	-	G	68552013	A	G	68552013	2	3	576	1	0	0	0	0	0	0	0	1	7602	446	16	5		5	IFNG	12	68552013	Silent	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09		68552013	65299882	21	51547										
CLIP1	0	genome.wustl.edu	37	chr12	122825568	122825568	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttgtttaacgtgtcttccAtttctacgagatgctggtct	8	8	3	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	12	122825568	122825568	A	G	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.2183	p.M728T	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	424	0	0	178	148	45.26	-	-	-	G	122825568	A	G	122825568	3	3	576	1	0	0	0	0	1	0	0	0	3562	217	8	5	2197	5	CLIP1	12	122825568	Missense_Mutation	SNP	A	TCGA-BH-A18N-01A-11D-A12B-09	54273555	122825568	11026327	22	51548										
CLYBL	0	genome.wustl.edu	37	chr13	100518497	100518497	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taacatcccattttcaggtgCaacaagtagtaaagaaaccc	6	10	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	13	100518497	100518497	C	G	SNP	CLYBL	ENST00000339105	human	ensembl	69_37n	1	known	missense	c.638	p.A213G	1.000	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246	131	0	0	44	89	66.92	-	-	-	G	100518497	C	G	100518497	3	3	576	1	0	0	0	0	1	0	0	0	3603	710	25	4	660	4	CLYBL	13	100518497	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09		100518497	14651381	23	51549										
ZIC5	0	genome.wustl.edu	37	chr13	100617886	100617886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggggtcctggagaaggtggCggggacttgcagtgaatctt	18	6	1	2			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	13	100617886	100617886	C	T	SNP	ZIC5	ENST00000267294	human	ensembl	69_37n	-1	novel	silent	c.1737	p.P579	0.052	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800	304	1	0.33	117	180	60.61	-	-	-	T	100617886	C	T	100617886	2	4	576	1	0	0	0	0	0	0	0	1	17778	755	27	1		1	ZIC5	13	100617886	Silent	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09	99389	100617886	14551992	24	51550										
MDGA2	0	genome.wustl.edu	37	chr14	47389322	47389322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgtctgttctgccatactgGattgtaggtatcataataga	10	6	3	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	14	47389322	47389322	G	T	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.2131	p.P711T	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	310	2	0.64	208	44	17.46	-	-	-	T	47389322	G	T	47389322	3	4	576	1	0	0	0	0	1	0	0	0	9478	1174	41	2	978	2	MDGA2	14	47389322	Missense_Mutation	SNP	G	TCGA-BH-A18N-01A-11D-A12B-09		47389322	59960218	25	51551										
CDH8	0	genome.wustl.edu	37	chr16	61689592	61689592	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	cttgcttctggcggttgaatCcattatgctttgccaaaata	8	9	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	16	61689592	61689592	C	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1688	p.G563A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	306	0	0	136	17	11.11	-	-	-	G	61689592	C	G	61689592	3	3	576	1	0	0	0	0	1	0	0	0	3145	855	30	2	719	2	CDH8	16	61689592	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09		61689592	28665161	26	51552										
CD68	0	genome.wustl.edu	37	chr17	7484092	7484092	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtacaatgtgtccttccccCacgcagcacgtaagtaacct	7	14	0	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	17	7484092	7484092	C	G	SNP	CD68	ENST00000250092	human	ensembl	69_37n	1	known	missense	c.751	p.H251D	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	CD68	HGNC	ENSG00000129226	105	0	0	62	51	45.13	-	-	-	G	7484092	C	G	7484092	3	3	576	1	0	0	0	0	1	0	0	0	3059	594	21	4	765	4	CD68	17	7484092	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09		7484092	73711118	27	51553										
PRKAR1A	0	genome.wustl.edu	37	chr17	66511561	66511561	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atggagtctggcagtaccgcCgccagtgaggaggcacgcag	16	11	1	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	17	66511561	66511561	C	T	SNP	PRKAR1A	ENST00000588188	human	ensembl	69_37n	1	putative	missense	c.19	p.R7C	0.983	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKAR1A	HGNC	ENSG00000108946	155	0	0	98	62	38.75	-	-	-	T	66511561	C	T	66511561	3	4	576	1	0	0	0	0	1	0	0	0	12584	639	23	1	23	1	PRKAR1A	17	66511561	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09	59027469	66511561	14683649	28	51554										
DCC	0	genome.wustl.edu	37	chr18	50432563	50432563	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccaatcccaggtgactccCgagtggtggtcttgccctct	10	15	2	1			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	18	50432563	50432563	C	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	silent	c.562	p.R188	0.991	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	181	0	0	97	66	40.49	-	-	-	A	50432563	C	A	50432563	2	1	576	1	0	0	0	0	0	0	0	1	4313	644	23	3		3	DCC	18	50432563	Silent	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09		50432563	27644685	29	51555										
ATP4A	0	genome.wustl.edu	37	chr19	36051382	36051382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtcagcgaggagttgtccaCcttgcagccctgggccgcca	13	14	1	0			TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c38ac4-c410-4602-83e3-9b80b4f93839	a8974cdc-5625-4575-80de-2fcd0671a693	19	36051382	36051382	C	T	SNP	ATP4A	ENST00000262623	human	ensembl	69_37n	-1	known	missense	c.670	p.V224M	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP4A	HGNC	ENSG00000105675	150	0	0	75	63	45.65	-	-	-	T	36051382	C	T	36051382	3	4	576	1	0	0	0	0	1	0	0	0	1149	507	18	4	2505	4	ATP4A	19	36051382	Missense_Mutation	SNP	C	TCGA-BH-A18N-01A-11D-A12B-09		36051382	23077601	30	51556										
CDK11B	0	genome.wustl.edu	37	chr1	1572319	1572319	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtcaccacgaccggggtgtaGgccttcagaggggatccgta	15	11	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	1572319	1572319	G	C	SNP	CDK11B	ENST00000513088	human	ensembl	69_37n	-1	putative	missense	c.1246	p.L416V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDK11B	HGNC	ENSG00000248333	115	0	0	57	24	29.63	-	-	-	C	1572319	G	C	1572319	3	2	577	1	0	0	0	0	1	0	0	0	3156	987	35	4	628	4	CDK11B	1	1572319	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		1572319	247678302	1	51557										
CDK11A	0	genome.wustl.edu	37	chr1	1647791	1647791	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cccagcccactcacctttctCtcctggaatgctcccttgcc	5	20	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	1647791	1647791	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	missense	c.482	p.R161K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	993	0	0	685	126	15.52	-	-	-	T	1647791	C	T	1647791	3	4	577	1	0	0	0	0	1	0	0	0	3155	913	32	2	1924	2	CDK11A	1	1647791	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	75472	1647791	247602830	2	51558										
GPR153	0	genome.wustl.edu	37	chr1	6313985	6313985	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gccagcgtctggaagagggcGatggctgtgcagatcacgcc	16	11	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	6313985	6313985	G	A	SNP	GPR153	ENST00000377893	human	ensembl	69_37n	-1	known	silent	c.579	p.I193	0.983	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153/162	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153,prints_GPCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	25	0	0	20	6	22.22	-	-	-	A	6313985	G	A	6313985	2	1	577	1	0	0	0	0	0	0	0	1	6709	1048	37	1		1	GPR153	1	6313985	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4666194	6313985	242936636	3	51559										
CAMTA1	0	genome.wustl.edu	37	chr1	7309644	7309644	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aagaggaaagatgggaaaacGaccagagaggaccacatgaa	13	6	0	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	7309644	7309644	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	silent	c.396	p.T132	1.000	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	271	0	0	168	48	22.22	-	-	-	A	7309644	G	A	7309644	2	1	577	1	0	0	0	0	0	0	0	1	2638	1045	37	1		1	CAMTA1	1	7309644	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	995659	7309644	241940977	4	51560										
CTRC	0	genome.wustl.edu	37	chr1	15767045	15767045	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	catacgtgtggcgggactttGattgctagcaacttcgtcct	11	10	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	15767045	15767045	G	C	SNP	CTRC	ENST00000375949	human	ensembl	69_37n	1	known	missense	c.189	p.L63F	0.997	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	CTRC	HGNC	ENSG00000162438	91	0	0	64	19	22.62	-	-	-	C	15767045	G	C	15767045	3	2	577	1	0	0	0	0	1	0	0	0	4059	1281	45	2	199	2	CTRC	1	15767045	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8457401	15767045	233483576	5	51561										
LUZP1	0	genome.wustl.edu	37	chr1	23418627	23418627	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttcattctccattccagcatCtttatcattctcaaataggg	4	11	5	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	23418627	23418627	C	T	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.2128	p.D710N	0.020	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	393	0	0	266	83	23.71	-	-	-	T	23418627	C	T	23418627	3	4	577	1	0	0	0	0	1	0	0	0	9152	913	32	2	1110	2	LUZP1	1	23418627	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	7651582	23418627	225831994	6	51562										
HCRTR1	0	genome.wustl.edu	37	chr1	32090605	32090605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accctgggcctagggtgttcGggatgttccgccaagccagt	14	12	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	32090605	32090605	G	A	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	1	known	missense	c.973	p.G325R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	53	0	0	26	10	27.78	-	-	-	A	32090605	G	A	32090605	3	1	577	1	0	0	0	0	1	0	0	0	7052	1116	39	1	995	1	HCRTR1	1	32090605	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8671978	32090605	217160016	7	51563										
PHC2	0	genome.wustl.edu	37	chr1	33834190	33834190	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agtgccgagctcaggctgcaCagtagcgacggtggccgtgg	17	11	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	33834190	33834190	C	G	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.610	p.V204L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	22	0	0	10	9	47.37	-	-	-	G	33834190	C	G	33834190	3	3	577	1	0	0	0	0	1	0	0	0	11891	478	17	4	2006	4	PHC2	1	33834190	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1743585	33834190	215416431	8	51564										
FRRS1	0	genome.wustl.edu	37	chr1	100185140	100185140	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atcctcctatgttctttggaGagtctgtcacatcatatttt	6	9	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	100185140	100185140	G	A	SNP	FRRS1	ENST00000287474	human	ensembl	69_37n	-1	known	missense	c.1070	p.S357F	0.000	smart_DOMON_domain,pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	291	1	0.34	147	51	25.76	-	-	-	A	100185140	G	A	100185140	3	1	577	1	0	0	0	0	1	0	0	0	6109	942	33	2	842	2	FRRS1	1	100185140	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	66350950	100185140	149065481	9	51565										
GSTM3	0	genome.wustl.edu	37	chr1	110280959	110280959	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atggcattgctctgggtgatCttgttcttcccatccaggag	11	10	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	110280959	110280959	C	T	SNP	GSTM3	ENST00000256594	human	ensembl	69_37n	-1	known	silent	c.219	p.K73	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM3	HGNC	ENSG00000134202	373	1	0.27	216	59	21.45	-	-	-	T	110280959	C	T	110280959	2	4	577	1	0	0	0	0	0	0	0	1	6890	912	32	2		2	GSTM3	1	110280959	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10095819	110280959	138969662	10	51566										
C1orf51	0	genome.wustl.edu	37	chr1	150255964	150255964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcaggatctggggcgaaaaGatcaagagatggtgaactgg	17	5	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	150255964	150255964	G	C	SNP	C1orf51	ENST00000290363	human	ensembl	69_37n	1	known	missense	c.287	p.R96T	1.000	NULL	NULL	-	no_errors	C1orf51	HGNC	ENSG00000159208	69	0	0	83	23	21.5	-	-	-	C	150255964	G	C	150255964	3	2	577	1	0	0	0	0	1	0	0	0	2063	942	33	2	289	2	C1orf51	1	150255964	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	39975005	150255964	98994657	11	51567										
RUSC1	0	genome.wustl.edu	37	chr1	155294933	155294933	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtctccgttgataaaatcatCtcgcatttcggggccgcccg	10	13	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	155294933	155294933	C	T	SNP	RUSC1	ENST00000368352	human	ensembl	69_37n	1	known	silent	c.1497	p.I499	1.000	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753	176	0	0	186	28	13.08	-	-	-	T	155294933	C	T	155294933	2	4	577	1	0	0	0	0	0	0	0	1	13836	903	32	2		2	RUSC1	1	155294933	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5038969	155294933	93955688	12	51568										
NES	0	genome.wustl.edu	37	chr1	156640299	156640299	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccaggggcatcttccaggatCggggtgtacgttgggctggg	18	9	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	156640299	156640299	C	A	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	silent	c.3681	p.P1227	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	44	0	0	49	12	19.67	-	-	-	A	156640299	C	A	156640299	2	1	577	1	0	0	0	0	0	0	0	1	10409	871	31	3		3	NES	1	156640299	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1345366	156640299	92610322	13	51569										
CD1D	0	genome.wustl.edu	37	chr1	158152865	158152865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atctccgagcaaccctggatGtggtggctggggaggcagct	16	10	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	158152865	158152865	G	A	SNP	CD1D	ENST00000368171	human	ensembl	69_37n	1	known	missense	c.805	p.V269M	0.102	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1D	HGNC	ENSG00000158473	242	0	0	315	44	12.26	-	-	-	A	158152865	G	A	158152865	3	1	577	1	0	0	0	0	1	0	0	0	3006	1377	48	4	819	4	CD1D	1	158152865	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1512566	158152865	91097756	14	51570										
NME7	0	genome.wustl.edu	37	chr1	169102038	169102038	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	caccactaattatccaagatCttgaagaagtattgaacctg	6	9	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	169102038	169102038	C	G	SNP	NME7	ENST00000367811	human	ensembl	69_37n	-1	known	missense	c.1116	p.K372N	1.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	209	0	0	288	44	13.25	-	-	-	G	169102038	C	G	169102038	3	3	577	1	0	0	0	0	1	0	0	0	10568	912	32	2	18	2	NME7	1	169102038	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10949173	169102038	80148583	15	51571										
ABL2	0	genome.wustl.edu	37	chr1	179095776	179095776	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acttcactccactcaccattCtggttgtaaccaaggactcg	6	14	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	179095776	179095776	C	T	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	silent	c.423	p.Q141	1.000	pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	70	0	0	82	47	36.43	-	-	-	T	179095776	C	T	179095776	2	4	577	1	0	0	0	0	0	0	0	1	93	912	32	2		2	ABL2	1	179095776	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	9993738	179095776	70154845	16	51572										
TDRD5	0	genome.wustl.edu	37	chr1	179632576	179632576	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aagtagaagttcataagccaGaagtactgggtgctcaggaa	12	6	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	179632576	179632576	G	C	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.2599	p.E867Q	0.720	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	247	0	0	353	62	14.9	-	-	-	C	179632576	G	C	179632576	3	2	577	1	0	0	0	0	1	0	0	0	15828	943	33	2	2491	2	TDRD5	1	179632576	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	536800	179632576	69618045	17	51573										
ASPM	0	genome.wustl.edu	37	chr1	197071299	197071299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	attgctgttggatcacaacgGaggcctgtttcaaagcctga	11	9	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	197071299	197071299	G	A	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.7082	p.S2361F	0.788	superfamily_ARM-type_fold,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	179	0	0	221	139	38.4	-	-	-	A	197071299	G	A	197071299	3	1	577	1	0	0	0	0	1	0	0	0	1060	1174	41	2	3395	2	ASPM	1	197071299	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	17438723	197071299	52179322	18	51574										
PTPRC	0	genome.wustl.edu	37	chr1	198711494	198711494	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gatgcctgatggttcaagtaGaggtatgttctaacctttag	11	6	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	198711494	198711494	G	A	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.2695	p.E899K	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	421	1	0.24	481	170	26.11	-	-	-	A	198711494	G	A	198711494	3	1	577	1	0	0	0	0	1	0	0	0	12880	943	33	2	2794	2	PTPRC	1	198711494	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1640195	198711494	50539127	19	51575										
LRRN2	0	genome.wustl.edu	37	chr1	204587427	204587427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagctgtggccccctggcccCggagggaggaggcactggac	18	13	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	204587427	204587427	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	missense	c.1694	p.R565Q	0.066	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	134	1	0.74	119	82	40.59	-	-	-	T	204587427	C	T	204587427	3	4	577	1	0	0	0	0	1	0	0	0	9101	652	23	1	451	1	LRRN2	1	204587427	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5875933	204587427	44663194	20	51576										
SLC41A1	0	genome.wustl.edu	37	chr1	205779276	205779276	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggaaacagtacttgcagcccGatggaaaaggaggtctcctt	12	9	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	205779276	205779276	G	A	SNP	SLC41A1	ENST00000367137	human	ensembl	69_37n	-1	known	silent	c.294	p.I98	0.975	NULL	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A1	HGNC	ENSG00000133065	216	0	0	267	60	18.29	-	-	-	A	205779276	G	A	205779276	2	1	577	1	0	0	0	0	0	0	0	1	14718	1048	37	1		1	SLC41A1	1	205779276	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1191849	205779276	43471345	21	51577										
LAMB3	0	genome.wustl.edu	37	chr1	209790817	209790817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgctgggcctggactgcctCtgccccctgctgccgggctt	13	17	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	209790817	209790817	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.3166	p.E1056K	0.946	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	106	0	0	120	19	13.67	-	-	-	T	209790817	C	T	209790817	3	4	577	1	0	0	0	0	1	0	0	0	8666	922	32	2	364	2	LAMB3	1	209790817	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4011541	209790817	39459804	22	51578										
OR2T27	0	genome.wustl.edu	37	chr1	248813395	248813395	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cctgctcaggggtgtggtaaGaatgaggcagcacgtatgtg	16	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	1	248813395	248813395	G	C	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.791	p.S264C	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	166	0	0	211	32	13.11	-	-	-	C	248813395	G	C	248813395	3	2	577	1	0	0	0	0	1	0	0	0	11094	942	33	2	165	2	OR2T27	1	248813395	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	39022578	248813395	437226	23	51579										
MBOAT2	0	genome.wustl.edu	37	chr2	9000774	9000774	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagtgatggttttatagaaaGaagcacaaatggcacaactg	11	5	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	9000774	9000774	G	C	SNP	MBOAT2	ENST00000305997	human	ensembl	69_37n	-1	known	missense	c.1306	p.L436V	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MBOAT_fam,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MBOAT2	HGNC	ENSG00000143797	254	0	0	190	38	16.67	-	-	-	C	9000774	G	C	9000774	3	2	577	1	0	0	0	0	1	0	0	0	9428	942	33	2	264	2	MBOAT2	2	9000774	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		9000774	234198599	24	51580										
APOB	0	genome.wustl.edu	37	chr2	21242743	21242743	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatgagaggtgggatcacctCcgttttggtggtagagacca	14	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	21242743	21242743	C	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.2851	p.E951Q	0.694	superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	229	0	0	222	56	20.07	-	-	-	G	21242743	C	G	21242743	3	3	577	1	0	0	0	0	1	0	0	0	787	864	30	2	10884	2	APOB	2	21242743	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12241969	21242743	221956630	25	51581										
CAD	0	genome.wustl.edu	37	chr2	27449092	27449092	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cactgaatgacagggagtatCagctcctgaggcagacagct	12	10	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	27449092	27449092	C	T	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	nonsense	c.1936	p.Q646*	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	220	0	0	133	111	45.31	-	-	-	T	27449092	C	T	27449092	4	4	577	1	0	0	0	0	0	1	0	0	2590	827	29	2	1986	2	CAD	2	27449092	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	6206349	27449092	215750281	26	51582										
LRPPRC	0	genome.wustl.edu	37	chr2	44202316	44202316	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accaggctcaattccggcatCtctcatcactgtgagaatgt	8	12	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	44202316	44202316	C	G	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.778	p.D260H	0.939	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	210	0	0	146	34	18.78	-	-	-	G	44202316	C	G	44202316	3	3	577	1	0	0	0	0	1	0	0	0	9031	913	32	2	3534	2	LRPPRC	2	44202316	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	16753224	44202316	198997057	27	51583										
FSHR	0	genome.wustl.edu	37	chr2	49195939	49195939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagtaggcagcttttttaagTtgtaagtcgacctggccctc	11	9	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	49195939	49195939	T	C	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.752	p.N251S	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	277	0	0	153	93	37.65	-	-	-	C	49195939	T	C	49195939	3	2	577	1	0	0	0	0	1	0	0	0	6122	1725	60	5	1343	5	FSHR	2	49195939	Missense_Mutation	SNP	T	TCGA-BH-A18P-01A-11D-A12B-09	4993623	49195939	194003434	28	51584										
CCDC88A	0	genome.wustl.edu	37	chr2	55591121	55591121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcaaccgctgcttttgtatCaaaatctaaaccttgaattc	6	10	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	55591121	55591121	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.451	p.D151H	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	228	0	0	158	39	19.8	-	-	-	G	55591121	C	G	55591121	3	3	577	1	0	0	0	0	1	0	0	0	2890	826	29	2	5272	2	CCDC88A	2	55591121	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	6395182	55591121	187608252	29	51585										
VPS54	0	genome.wustl.edu	37	chr2	64148438	64148438	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atttgccagctttcctagctCtgagtcagttaatttcatat	6	9	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	64148438	64148438	C	G	SNP	VPS54	ENST00000272322	human	ensembl	69_37n	-1	known	missense	c.1771	p.E591Q	1.000	NULL	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952	207	0	0	143	27	15.88	-	-	-	G	64148438	C	G	64148438	3	3	577	1	0	0	0	0	1	0	0	0	17313	922	32	2	1206	2	VPS54	2	64148438	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8557317	64148438	179050935	30	51586										
PROKR1	0	genome.wustl.edu	37	chr2	68873196	68873196	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtctgcggcattggaaacttCatctttatcgctgccctggt	10	11	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	68873196	68873196	C	T	SNP	PROKR1	ENST00000303786	human	ensembl	69_37n	1	known	silent	c.243	p.F81	0.974	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PROKR1	HGNC	ENSG00000169618	197	0	0	243	38	13.52	-	-	-	T	68873196	C	T	68873196	2	4	577	1	0	0	0	0	0	0	0	1	12633	825	29	2		2	PROKR1	2	68873196	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4724758	68873196	174326177	31	51587										
ANXA4	0	genome.wustl.edu	37	chr2	70033627	70033627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	caagagctgcgaagggccatGaaggtctgtgctcttcctct	12	11	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	70033627	70033627	G	A	SNP	ANXA4	ENST00000394295	human	ensembl	69_37n	1	known	missense	c.303	p.M101I	1.000	pfam_Annexin_repeat,superfamily_Annexin,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975	191	0	0	148	39	20.74	-	-	-	A	70033627	G	A	70033627	3	1	577	1	0	0	0	0	1	0	0	0	719	1290	45	2	317	2	ANXA4	2	70033627	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1160431	70033627	173165746	32	51588										
POLR1A	0	genome.wustl.edu	37	chr2	86258620	86258620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gggaagggacgggtcctcctCagtgcctaagcccacctctt	12	14	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	86258620	86258620	C	G	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.4411	p.E1471Q	0.986	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	249	1	0.4	205	43	17.34	-	-	-	G	86258620	C	G	86258620	3	3	577	1	0	0	0	0	1	0	0	0	12283	835	29	2	771	2	POLR1A	2	86258620	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	16224993	86258620	156940753	33	51589										
GALNT5	0	genome.wustl.edu	37	chr2	158142577	158142577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtcccagtttccaaaagttCggattcttcgcctcaaagag	8	11	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	158142577	158142577	C	T	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.1672	p.R558W	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	259	0	0	195	46	19.01	-	-	-	T	158142577	C	T	158142577	3	4	577	1	0	0	0	0	1	0	0	0	6266	875	31	1	1682	1	GALNT5	2	158142577	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	71883957	158142577	85056796	34	51590										
PKP4	0	genome.wustl.edu	37	chr2	159537087	159537087	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctactgattactcaacacaGtatggactgaaatcgaccac	6	11	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	159537087	159537087	G	A	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	silent	c.3477	p.Q1159	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	317	0	0	218	39	15.18	-	-	-	A	159537087	G	A	159537087	2	1	577	1	0	0	0	0	0	0	0	1	12061	1020	36	4		4	PKP4	2	159537087	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1394510	159537087	83662286	35	51591										
FAP	0	genome.wustl.edu	37	chr2	163044822	163044822	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttacttgcaagataagatatCcaattaacagcaaatacaga	5	7	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	163044822	163044822	C	T	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	nonsense	c.1671	p.W557*	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	169	0	0	179	38	17.51	-	-	-	T	163044822	C	T	163044822	4	4	577	1	0	0	0	0	0	1	0	0	5719	856	30	2	639	2	FAP	2	163044822	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3507735	163044822	80154551	36	51592										
XIRP2	0	genome.wustl.edu	37	chr2	167760155	167760155	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagaggtagtatcagcacctCaatctttggatcccacaagt	9	10	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	167760155	167760155	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	nonsense	c.163	p.Q55*	0.015	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	180	0	0	155	39	20	-	-	-	T	167760155	C	T	167760155	4	4	577	1	0	0	0	0	0	1	0	0	17527	827	29	2	165	2	XIRP2	2	167760155	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4715333	167760155	75439218	37	51593										
TTN	0	genome.wustl.edu	37	chr2	179483183	179483183	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacttcaccatcaaatgtttCtgtcacttctaagttacgta	4	11	5	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	179483183	179483183	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.39298	p.E13100*	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	105	0	0	106	26	19.7	-	-	-	A	179483183	C	A	179483183	4	1	577	1	0	0	0	0	0	1	0	0	16832	922	32	2	61135	2	TTN	2	179483183	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	11723028	179483183	63716190	38	51594										
TTN	0	genome.wustl.edu	37	chr2	179483357	179483357	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctgcttttccatgtttgttCtgaagcacaattttatacct	5	9	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	179483357	179483357	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.39216	p.Q13072H	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	483	0	0	399	53	11.73	-	-	-	G	179483357	C	G	179483357	3	3	577	1	0	0	0	0	1	0	0	0	16832	912	32	2	61221	2	TTN	2	179483357	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	174	179483357	63716016	39	51595										
TTN	0	genome.wustl.edu	37	chr2	179640575	179640575	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcttcataatagccctcttCtgttctgcgcttgaatttac	7	11	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	179640575	179640575	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6016	p.E2006Q	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	174	0	0	161	40	19.9	-	-	-	G	179640575	C	G	179640575	3	3	577	1	0	0	0	0	1	0	0	0	16832	922	32	2	105312	2	TTN	2	179640575	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	157218	179640575	63558798	40	51596										
GLS	0	genome.wustl.edu	37	chr2	191760405	191760405	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atatgttaagattaactcttCaaacaacatcagatggtgtc	6	7	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	191760405	191760405	C	T	SNP	GLS	ENST00000320717	human	ensembl	69_37n	1	known	nonsense	c.559	p.Q187*	1.000	NULL	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419	154	1	0.65	125	24	16.11	-	-	-	T	191760405	C	T	191760405	4	4	577	1	0	0	0	0	0	1	0	0	6515	827	29	2	569	2	GLS	2	191760405	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12119830	191760405	51438968	41	51597										
NBEAL1	0	genome.wustl.edu	37	chr2	203995183	203995183	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaagtactctgacagactaaGagaaatcatttttaaggtac	8	6	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	203995183	203995183	G	C	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.3461	p.R1154T	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	235	0	0	302	49	13.92	-	-	-	C	203995183	G	C	203995183	3	2	577	1	0	0	0	0	1	0	0	0	10260	942	33	2	3551	2	NBEAL1	2	203995183	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	12234778	203995183	39204190	42	51598										
ZDBF2	0	genome.wustl.edu	37	chr2	207170370	207170370	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgattgtatctctcttcagtCagcatctgatcagccccaag	7	12	6	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	207170370	207170370	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.1118	p.S373L	0.981	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	227	0	0	199	96	32.54	-	-	-	T	207170370	C	T	207170370	3	4	577	1	0	0	0	0	1	0	0	0	17695	838	29	2	1128	2	ZDBF2	2	207170370	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3175187	207170370	36029003	43	51599										
ABCA12	0	genome.wustl.edu	37	chr2	215815648	215815648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgttgtttacagctataatCtttttgtggataagttggta	9	3	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	215815648	215815648	C	G	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.6807	p.K2269N	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	432	0	0	359	79	18.04	-	-	-	G	215815648	C	G	215815648	3	3	577	1	0	0	0	0	1	0	0	0	30	912	32	2	1016	2	ABCA12	2	215815648	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8645278	215815648	27383725	44	51600										
SLC23A3	0	genome.wustl.edu	37	chr2	220032957	220032957	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggagaggagtgtgagttgatGacgttgaagctcgcctccag	16	7	0	5			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	220032957	220032957	G	A	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.782	p.S261L	0.013	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	105	0	0	53	41	43.62	-	-	-	A	220032957	G	A	220032957	3	1	577	1	0	0	0	0	1	0	0	0	14553	1294	45	2	1102	2	SLC23A3	2	220032957	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4217309	220032957	23166416	45	51601										
KCNJ13	0	genome.wustl.edu	37	chr2	233633333	233633333	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aaatccacactggtctggtaGagtttgccattttctctttc	7	10	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	233633333	233633333	G	C	SNP	KCNJ13	ENST00000233826	human	ensembl	69_37n	-1	known	silent	c.651	p.L217	0.998	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir7,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ13	HGNC	ENSG00000115474	267	0	0	237	52	17.87	-	-	-	C	233633333	G	C	233633333	2	2	577	1	0	0	0	0	0	0	0	1	8101	929	33	2		2	KCNJ13	2	233633333	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	13600376	233633333	9566040	46	51602										
IQCA1	0	genome.wustl.edu	37	chr2	237374267	237374267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tccctgtagtcctcttcatgCtttatctgcacctcattccg	5	15	4	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	237374267	237374267	C	T	SNP	IQCA1	ENST00000418802	human	ensembl	69_37n	-1	putative	missense	c.862	p.A288T	0.787	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IQCA1	HGNC	ENSG00000132321	369	0	0	219	159	42.06	-	-	-	T	237374267	C	T	237374267	3	4	577	1	0	0	0	0	1	0	0	0	7856	796	28	4	1717	4	IQCA1	2	237374267	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3740934	237374267	5825106	47	51603										
KLHL30	0	genome.wustl.edu	37	chr2	239057647	239057647	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cagtgcccgtgccccccacaGatgcgtggagtgtgatcgcc	13	15	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	2	239057647	239057647	G	A	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	1	known	splice_site	c.1340-1	e6-1	1.000	-	-	-	no_errors	KLHL30	HGNC	ENSG00000168427	54	0	0	58	8	12.12	-	-	-	A	239057647	G	A	239057647	5	1	577	1	0	0	0	0	0	0	1	0	8437	956	33	2	1361	2	KLHL30	2	239057647	Splice_Site	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1683380	239057647	4141726	48	51604										
FBXL2	0	genome.wustl.edu	37	chr3	33420176	33420176	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acacagcatgtttctctccaGataaccgacagcacactcat	5	14	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	33420176	33420176	G	C	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	1	known	splice_site	c.895-1	e13-1	1.000	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558	340	0	0	230	72	23.76	-	-	-	C	33420176	G	C	33420176	5	2	577	1	0	0	0	0	0	0	1	0	5762	956	33	2	944	2	FBXL2	3	33420176	Splice_Site	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		33420176	164602254	49	51605										
SCN5A	0	genome.wustl.edu	37	chr3	38627460	38627460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtcaggttccccagtgcccCcactgagttcccgatgatct	9	15	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	38627460	38627460	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.2509	p.G837R	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	266	0	0	228	56	19.72	-	-	-	T	38627460	C	T	38627460	3	4	577	1	0	0	0	0	1	0	0	0	14010	623	22	4	3593	4	SCN5A	3	38627460	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5207284	38627460	159394970	50	51606										
FYCO1	0	genome.wustl.edu	37	chr3	46007876	46007876	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgggcccgctgctctgcctGggcgagctgggcctgcaggc	17	15	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	46007876	46007876	G	C	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.2950	p.Q984E	0.993	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	93	0	0	49	15	23.44	-	-	-	C	46007876	G	C	46007876	3	2	577	1	0	0	0	0	1	0	0	0	6174	1357	47	4	1530	4	FYCO1	3	46007876	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	7380416	46007876	152014554	51	51607										
CADPS	0	genome.wustl.edu	37	chr3	62477092	62477092	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	actccatcagatccacatatCtaacaacaagtggggcaaac	6	12	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	62477092	62477092	C	G	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.2948	p.R983T	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	265	0	0	118	29	19.73	-	-	-	G	62477092	C	G	62477092	3	3	577	1	0	0	0	0	1	0	0	0	2595	913	32	2	1153	2	CADPS	3	62477092	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	16469216	62477092	135545338	52	51608										
POLQ	0	genome.wustl.edu	37	chr3	121228970	121228970	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcctcaatcgctccaagctGaacagactcttgatttctct	7	13	3	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	121228970	121228970	G	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	nonsense	c.1732	p.Q578*	0.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	313	0	0	230	57	19.86	-	-	-	A	121228970	G	A	121228970	4	1	577	1	0	0	0	0	0	1	0	0	12282	1299	45	2	6120	2	POLQ	3	121228970	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	58751878	121228970	76793460	53	51609										
RBP1	0	genome.wustl.edu	37	chr3	139244741	139244741	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcaagaggaaaagccagtttCactctaaaagcagattaaaa	7	7	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	139244741	139244741	C	T	SNP	RBP1	ENST00000483943	human	ensembl	69_37n	-1	putative	missense	c.442	p.E148K	0.000	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115	193	0	0	166	36	17.82	-	-	-	T	139244741	C	T	139244741	3	4	577	1	0	0	0	0	1	0	0	0	13238	835	29	2	187	2	RBP1	3	139244741	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	18015771	139244741	58777689	54	51610										
RBP1	0	genome.wustl.edu	37	chr3	139258551	139258551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agcgcgcacaaagcctgcggGaggatccattgtagcggtcg	15	11	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	139258551	139258551	G	A	SNP	RBP1	ENST00000232219	human	ensembl	69_37n	-1	known	missense	c.10	p.P4S	0.987	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115	11	0	0	6	8	57.14	-	-	-	A	139258551	G	A	139258551	3	1	577	1	0	0	0	0	1	0	0	0	13238	1174	41	2	667	2	RBP1	3	139258551	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	13810	139258551	58763879	55	51611										
SLC25A36	0	genome.wustl.edu	37	chr3	140695209	140695209	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgggtctctttatcgtggtCtgacaactcatctagtgaga	10	8	4	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	140695209	140695209	C	T	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	1	known	silent	c.850	p.L284	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	278	0	0	243	57	18.87	-	-	-	T	140695209	C	T	140695209	2	4	577	1	0	0	0	0	0	0	0	1	14589	912	32	2		2	SLC25A36	3	140695209	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1436658	140695209	57327221	56	51612										
CPB1	0	genome.wustl.edu	37	chr3	148559668	148559668	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggactgtggtttccatgccaGagagtggatttctcctgcat	12	9	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	148559668	148559668	G	A	SNP	CPB1	ENST00000282957	human	ensembl	69_37n	1	known	missense	c.533	p.R178K	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002	587	0	0	411	92	18.25	-	-	-	A	148559668	G	A	148559668	3	1	577	1	0	0	0	0	1	0	0	0	3826	942	33	2	555	2	CPB1	3	148559668	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	7864459	148559668	49462762	57	51613										
TIPARP	0	genome.wustl.edu	37	chr3	156422677	156422677	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tactctcataacttttctaaGaagtcctccaaaggagtcca	5	11	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	156422677	156422677	G	C	SNP	TIPARP	ENST00000295924	human	ensembl	69_37n	1	known	missense	c.1731	p.K577N	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659	151	0	0	100	32	24.24	-	-	-	C	156422677	G	C	156422677	3	2	577	1	0	0	0	0	1	0	0	0	16019	933	33	2	1749	2	TIPARP	3	156422677	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	7863009	156422677	41599753	58	51614										
SMC4	0	genome.wustl.edu	37	chr3	160122246	160122246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggatgttggaaatcttcttcGaagccatggaattgacttgg	12	6	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	160122246	160122246	G	A	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.641	p.R214Q	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	166	0	0	130	39	23.08	-	-	-	A	160122246	G	A	160122246	3	1	577	1	0	0	0	0	1	0	0	0	14874	1058	37	1	655	1	SMC4	3	160122246	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3699569	160122246	37900184	59	51615										
TBL1XR1	0	genome.wustl.edu	37	chr3	176769295	176769296	+	Frame_Shift_Ins	INS	-	-	TA													0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcttgtctgagctcacttgcINStatagtatgtgctccattct							TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	176769295	176769296	-	TA	INS	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	frame_shift_ins	c.424_423	p.A141fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	271	0	0	140	66	32.04	-	-	-	TA	176769296	-	TA	176769295	7	5	577	1	0	1	1	0	0	0	0	0	15735	797	28	0	1168	0	TBL1XR1	3	176769295	Frame_Shift_Ins	INS	-	TCGA-BH-A18P-01A-11D-A12B-09	16647049	176769295	21253135	60	51616										
PSMD2	0	genome.wustl.edu	37	chr3	184019425	184019425	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctcccaggaggaattggcatCatggggtcatgagtatgtca	13	8	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	3	184019425	184019425	C	T	SNP	PSMD2	ENST00000310118	human	ensembl	69_37n	1	known	missense	c.458	p.S153L	0.999	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166	188	0	0	138	58	29.59	-	-	-	T	184019425	C	T	184019425	3	4	577	1	0	0	0	0	1	0	0	0	12778	838	29	2	472	2	PSMD2	3	184019425	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	7250130	184019425	14003005	61	51617										
SLC34A2	0	genome.wustl.edu	37	chr4	25677836	25677836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gttcactcgcctgcccatccGcatggccaaggggctgggca	13	15	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	25677836	25677836	G	A	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	1	known	missense	c.1538	p.R513H	1.000	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	232	0	0	151	85	35.86	-	-	-	A	25677836	G	A	25677836	3	1	577	1	0	0	0	0	1	0	0	0	14657	1087	38	1	1584	1	SLC34A2	4	25677836	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		25677836	165476440	62	51618										
EPHA5	0	genome.wustl.edu	37	chr4	66231763	66231763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gatcaatgtaagttcttactCctggcagtttaactgtaaat	7	7	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	66231763	66231763	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.1937	p.G646E	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	296	0	0	276	61	18.1	-	-	-	T	66231763	C	T	66231763	3	4	577	1	0	0	0	0	1	0	0	0	5207	855	30	2	1208	2	EPHA5	4	66231763	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	40553927	66231763	124922513	63	51619										
UGT2B15	0	genome.wustl.edu	37	chr4	69536210	69536210	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cctctgaacaagctcttccaGgattgtcttcatatttatcc	5	12	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	69536210	69536210	G	T	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	missense	c.127	p.L43M	0.974	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	204	0	0	102	87	46.03	-	-	-	T	69536210	G	T	69536210	3	4	577	1	0	0	0	0	1	0	0	0	17055	991	35	4	3106	4	UGT2B15	4	69536210	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3304447	69536210	121618066	64	51620										
UGT2B11	0	genome.wustl.edu	37	chr4	70070294	70070294	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatggaatgcccaccataggGatcccatggtagattgcctc	10	11	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	70070294	70070294	G	A	SNP	UGT2B11	ENST00000446444	human	ensembl	69_37n	-1	known	silent	c.1164	p.I388	0.993	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B11	HGNC	ENSG00000213759	413	0	0	347	43	11	-	-	-	A	70070294	G	A	70070294	2	1	577	1	0	0	0	0	0	0	0	1	17054	1164	41	2		2	UGT2B11	4	70070294	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	534084	70070294	121083982	65	51621										
RCHY1	0	genome.wustl.edu	37	chr4	76415808	76415808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacatccacagtcatgttctGatattctgatggcataggag	9	9	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	76415808	76415808	G	C	SNP	RCHY1	ENST00000324439	human	ensembl	69_37n	-1	known	missense	c.640	p.Q214E	1.000	NULL	pfam_Znf_CHY,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RCHY1	HGNC	ENSG00000163743	361	0	0	269	58	17.74	-	-	-	C	76415808	G	C	76415808	3	2	577	1	0	0	0	0	1	0	0	0	13260	1299	45	2	153	2	RCHY1	4	76415808	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6345514	76415808	114738468	66	51622										
SDAD1	0	genome.wustl.edu	37	chr4	76888470	76888470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aacctttgcaaaaagggataGaaattgaagaggaaaagctg	11	4	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	76888470	76888470	G	C	SNP	SDAD1	ENST00000356260	human	ensembl	69_37n	-1	known	missense	c.1005	p.F335L	1.000	superfamily_ARM-type_fold	pfam_SDA1,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	180	0	0	126	29	18.71	-	-	-	C	76888470	G	C	76888470	3	2	577	1	0	0	0	0	1	0	0	0	14038	933	33	2	1102	2	SDAD1	4	76888470	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	472662	76888470	114265806	67	51623										
KIAA1109	0	genome.wustl.edu	37	chr4	123201085	123201085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tagcatgatggttcgaagttCtcaccaactatctaaacaaa	6	9	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	123201085	123201085	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.8747	p.S2916F	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	195	0	0	152	34	18.28	-	-	-	T	123201085	C	T	123201085	3	4	577	1	0	0	0	0	1	0	0	0	8260	913	32	2	8941	2	KIAA1109	4	123201085	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	46312615	123201085	67953191	68	51624										
PCDH18	0	genome.wustl.edu	37	chr4	138451272	138451272	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggattgcctttgtcctgaatGataactgacagctcccattc	8	11	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	138451272	138451272	G	C	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1971	p.I657M	0.634	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	87	0	0	56	13	18.84	-	-	-	C	138451272	G	C	138451272	3	2	577	1	0	0	0	0	1	0	0	0	11586	1280	45	2	1452	2	PCDH18	4	138451272	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	15250187	138451272	52703004	69	51625										
SH3D19	0	genome.wustl.edu	37	chr4	152056281	152056281	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atttcctccttctgggatatCaatctagcaaagataaaatc	5	9	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	152056281	152056281	C	T	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.1660	p.D554N	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	245	0	0	179	31	14.76	-	-	-	T	152056281	C	T	152056281	3	4	577	1	0	0	0	0	1	0	0	0	14337	826	29	2	736	2	SH3D19	4	152056281	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	13605009	152056281	39097995	70	51626										
KIAA0922	0	genome.wustl.edu	37	chr4	154544085	154544085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agcctgagaagaaatgtgtgGacaagttctgctccgattcc	11	9	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	154544085	154544085	G	C	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.3895	p.D1299H	0.996	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	121	0	0	97	28	22.4	-	-	-	C	154544085	G	C	154544085	3	2	577	1	0	0	0	0	1	0	0	0	8253	1174	41	2	4009	2	KIAA0922	4	154544085	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2487804	154544085	36610191	71	51627										
CTSO	0	genome.wustl.edu	37	chr4	156849527	156849527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tttgacatgggcataaccatCtactccccaagaacttcccc	5	15	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	156849527	156849527	C	T	SNP	CTSO	ENST00000433477	human	ensembl	69_37n	-1	known	missense	c.892	p.D298N	0.977	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043	300	0	0	177	110	38.33	-	-	-	T	156849527	C	T	156849527	3	4	577	1	0	0	0	0	1	0	0	0	4072	913	32	2	81	2	CTSO	4	156849527	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	2305442	156849527	34304749	72	51628										
ODZ3	0	genome.wustl.edu	37	chr4	183635307	183635307	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	caaaatggctggcattgtgtGtgccagcctggatggagagg	16	7	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	4	183635307	183635307	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	silent	c.2289	p.V763	0.724	smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	159	0	0	126	27	17.65	-	-	-	A	183635307	G	A	183635307	2	1	577	1	0	0	0	0	0	0	0	1	10909	1364	48	4		4	ODZ3	4	183635307	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	26785780	183635307	7518969	73	51629										
MYO10	0	genome.wustl.edu	37	chr5	16670938	16670938	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gactggctgatgcgggccttGagtctctgcagggaataaac	14	9	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	16670938	16670938	G	C	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	silent	c.5580	p.L1860	0.991	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	119	0	0	70	42	37.5	-	-	-	C	16670938	G	C	16670938	2	2	577	1	0	0	0	0	0	0	0	1	10134	1277	45	2		2	MYO10	5	16670938	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		16670938	164244322	74	51630										
ZFR	0	genome.wustl.edu	37	chr5	32364313	32364313	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgcattcaaaaactcttctCagtgcatccccagggctctg	7	13	4	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	32364313	32364313	C	T	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	silent	c.2904	p.L968	0.997	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	174	0	0	110	21	15.91	-	-	-	T	32364313	C	T	32364313	2	4	577	1	0	0	0	0	0	0	0	1	17755	813	29	2		2	ZFR	5	32364313	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15693375	32364313	148550947	75	51631										
CARD6	0	genome.wustl.edu	37	chr5	40854270	40854270	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctctcagttcaaatccgatCagtccaacccatccacagtc	5	16	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	40854270	40854270	C	T	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	nonsense	c.2836	p.Q946*	0.003	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	426	1	0.23	363	88	19.51	-	-	-	T	40854270	C	T	40854270	4	4	577	1	0	0	0	0	0	1	0	0	2675	827	29	2	2846	2	CARD6	5	40854270	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8489957	40854270	140060990	76	51632										
PLCXD3	0	genome.wustl.edu	37	chr5	41382448	41382448	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctgggcttggtggaaattcGaagatcaaaataacgaattc	10	6	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	41382448	41382448	G	A	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	nonsense	c.292	p.R98*	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	165	0	0	128	36	21.95	-	-	-	A	41382448	G	A	41382448	4	1	577	1	0	0	0	0	0	1	0	0	12117	1066	37	1	681	1	PLCXD3	5	41382448	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	528178	41382448	139532812	77	51633										
MAP3K1	0	genome.wustl.edu	37	chr5	56155605	56155605	+	Frame_Shift_Del	DEL	C	C	-													0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atcacttagcagctgagtctCcaggagaggtccaggcaagt							TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	56155605	56155605	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.697	p.P233fs	0.424	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	89	0	0	56	36	39.13	-	-	-	-	56155605	C	-	56155605	7	5	577	1	0	1	0	1	0	0	0	0	9314	855	30	0	707	0	MAP3K1	5	56155605	Frame_Shift_Del	DEL	C	TCGA-BH-A18P-01A-11D-A12B-09	14773157	56155605	124759655	78	51634										
MAST4	0	genome.wustl.edu	37	chr5	66084606	66084606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cctgggccagtcggcgccctCgctcaccgccagcctggtga	13	18	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	66084606	66084606	C	T	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.626	p.S209L	0.959	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	41	0	0	29	12	29.27	-	-	-	T	66084606	C	T	66084606	3	4	577	1	0	0	0	0	1	0	0	0	9398	893	31	1	636	1	MAST4	5	66084606	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	9929001	66084606	114830654	79	51635										
PIK3R1	0	genome.wustl.edu	37	chr5	67592087	67592087	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gcagcaaccgaaacaaagctGaaaacctgttgcgagggaag	12	9	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	67592087	67592087	G	A	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1927	p.E643K	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	325	2	0.61	247	64	20.58	-	-	-	A	67592087	G	A	67592087	3	1	577	1	0	0	0	0	1	0	0	0	11992	1291	45	2	2087	2	PIK3R1	5	67592087	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1507481	67592087	113323173	80	51636										
SLC30A5	0	genome.wustl.edu	37	chr5	68410315	68410315	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttgccttcttaggtgtggcaGatcacaaggtatgatttctt	10	7	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	68410315	68410315	G	A	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.604	p.D202N	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	270	0	0	239	56	18.98	-	-	-	A	68410315	G	A	68410315	3	1	577	1	0	0	0	0	1	0	0	0	14647	942	33	2	718	2	SLC30A5	5	68410315	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	818228	68410315	112504945	81	51637										
DMXL1	0	genome.wustl.edu	37	chr5	118464937	118464937	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cttccatctattacatctctGagtctaaatgaaaatgaaga	5	8	3	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	118464937	118464937	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	silent	c.1134	p.L378	0.999	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	174	0	0	134	36	21.18	-	-	-	A	118464937	G	A	118464937	2	1	577	1	0	0	0	0	0	0	0	1	4630	1277	45	2		2	DMXL1	5	118464937	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	50054622	118464937	62450323	82	51638										
DMXL1	0	genome.wustl.edu	37	chr5	118582789	118582789	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaactggagtgatgcaaattGagacagggcctgcaaatcac	12	8	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	118582789	118582789	G	C	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.9022	p.E3008Q	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	232	0	0	228	44	16.18	-	-	-	C	118582789	G	C	118582789	3	2	577	1	0	0	0	0	1	0	0	0	4630	1291	45	2	9129	2	DMXL1	5	118582789	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	117852	118582789	62332471	83	51639										
ANKHD1	0	genome.wustl.edu	37	chr5	139908070	139908070	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gttcttctttcccagtttctCtacccttagcttatcctcac	3	15	4	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	139908070	139908070	C	G	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.5539	p.L1847V	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	331	0	0	308	82	21.03	-	-	-	G	139908070	C	G	139908070	3	3	577	1	0	0	0	0	1	0	0	0	628	912	32	2	5759	2	ANKHD1	5	139908070	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	21325281	139908070	41007190	84	51640										
IK	0	genome.wustl.edu	37	chr5	140037204	140037204	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acccagatcctttcatacctGaggcagggaacccgtaacaa	8	13	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	140037204	140037204	G	T	SNP	IK	ENST00000417647	human	ensembl	69_37n	1	known	silent	c.867	p.L289	1.000	pfam_RED_N	pfam_RED_N,pfam_RED_C	-	no_errors	IK	HGNC	ENSG00000113141	207	0	0	145	60	29.27	-	-	-	T	140037204	G	T	140037204	2	4	577	1	0	0	0	0	0	0	0	1	7662	1277	45	2		2	IK	5	140037204	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	129134	140037204	40878056	85	51641										
PCDHA9	0	genome.wustl.edu	37	chr5	140229695	140229695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agttccaggtgagcgcgcgcGacgcgggcgtgccgcctctg	17	14	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	140229695	140229695	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.1615	p.D539N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	34	0	0	19	19	50	-	-	-	A	140229695	G	A	140229695	3	1	577	1	0	0	0	0	1	0	0	0	11604	1058	37	1	1617	1	PCDHA9	5	140229695	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	192491	140229695	40685565	86	51642										
SH3TC2	0	genome.wustl.edu	37	chr5	148417943	148417943	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgactttccaatgaaccactGaagcccaggtatgacaaagc	8	12	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	148417943	148417943	G	A	SNP	SH3TC2	ENST00000515425	human	ensembl	69_37n	-1	known	nonsense	c.916	p.Q306*	0.915	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_TPR-1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247	179	0	0	155	32	17.11	-	-	-	A	148417943	G	A	148417943	4	1	577	1	0	0	0	0	0	1	0	0	14351	1299	45	2	2990	2	SH3TC2	5	148417943	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8188248	148417943	32497317	87	51643										
ATP10B	0	genome.wustl.edu	37	chr5	160059229	160059229	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tggatgggcacccgggcactCtggctcctcctcagaggctg	14	14	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	160059229	160059229	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.1527	p.Q509	0.952	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	117	0	0	63	16	20.25	-	-	-	T	160059229	C	T	160059229	2	4	577	1	0	0	0	0	0	0	0	1	1121	912	32	2		2	ATP10B	5	160059229	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	11641286	160059229	20856031	88	51644										
RANBP17	0	genome.wustl.edu	37	chr5	170722917	170722917	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agtgaactgagagcaagtttGataaacagccagcccctccc	9	12	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	170722917	170722917	G	A	SNP	RANBP17	ENST00000523189	human	ensembl	69_37n	1	known	silent	c.3069	p.L1023	0.999	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	251	0	0	185	41	18.06	-	-	-	A	170722917	G	A	170722917	2	1	577	1	0	0	0	0	0	0	0	1	13110	1281	45	2		2	RANBP17	5	170722917	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	10663688	170722917	10192343	89	51645										
TSPAN17	0	genome.wustl.edu	37	chr5	176081937	176081937	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggccccaatgactggaacctCaatatctacttcaactgcac	6	14	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	176081937	176081937	C	G	SNP	TSPAN17	ENST00000507471	human	ensembl	69_37n	1	putative	nonsense	c.296	p.S99*	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSPAN17	HGNC	ENSG00000048140	112	0	0	62	21	25.3	-	-	-	G	176081937	C	G	176081937	4	3	577	1	0	0	0	0	0	1	0	0	16737	813	29	2	516	2	TSPAN17	5	176081937	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5359020	176081937	4833323	90	51646										
HNRNPH1	0	genome.wustl.edu	37	chr5	179044636	179044636	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgtgtactctcacagggttGagcggtgaaaaaaactacaa	10	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	5	179044636	179044636	G	T	SNP	HNRNPH1	ENST00000521173	human	ensembl	69_37n	-1	novel	nonsense	c.560	p.S187*	0.992	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Znf_CHHC,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon	HNRNPH1	HGNC	ENSG00000169045	145	0	0	122	32	20.78	-	-	-	T	179044636	G	T	179044636	4	4	577	1	0	0	0	0	0	1	0	0	7317	1277	45	2	433	2	HNRNPH1	5	179044636	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2962699	179044636	1870624	91	51647										
CD83	0	genome.wustl.edu	37	chr6	14131891	14131891	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgaagatccgaaacactacCagctgcaactcggggacata	9	12	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	14131891	14131891	C	T	SNP	CD83	ENST00000379153	human	ensembl	69_37n	1	known	silent	c.294	p.T98	0.024	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD83	HGNC	ENSG00000112149	257	0	0	199	48	19.35	-	-	-	T	14131891	C	T	14131891	2	4	577	1	0	0	0	0	0	0	0	1	3070	581	21	4		4	CD83	6	14131891	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		14131891	156983176	92	51648										
KCTD20	0	genome.wustl.edu	37	chr6	36447445	36447445	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agagatacttgtgattatctCtgcattaattttgacttcaa	6	6	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	36447445	36447445	C	G	SNP	KCTD20	ENST00000265344	human	ensembl	69_37n	1	known	missense	c.341	p.S114C	1.000	NULL	NULL	-	no_errors	KCTD20	HGNC	ENSG00000112078	213	0	0	275	49	15.08	-	-	-	G	36447445	C	G	36447445	3	3	577	1	0	0	0	0	1	0	0	0	8162	900	32	2	629	2	KCTD20	6	36447445	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	22315554	36447445	134667622	93	51649										
FILIP1	0	genome.wustl.edu	37	chr6	76024427	76024427	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccacttctgccatgaggctaGagtttccacattctcctttg	7	13	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	76024427	76024427	G	C	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.1121	p.S374C	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	375	0	0	327	88	21.2	-	-	-	C	76024427	G	C	76024427	3	2	577	1	0	0	0	0	1	0	0	0	5940	942	33	2	2528	2	FILIP1	6	76024427	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	39576982	76024427	95090640	94	51650										
MYO6	0	genome.wustl.edu	37	chr6	76576321	76576321	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttatcaggcattttgcggggGcagtgtgctatgaaacagtg	14	6	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	76576321	76576321	G	C	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.1753	p.A585P	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	349	0	0	176	99	36	-	-	-	C	76576321	G	C	76576321	3	2	577	1	0	0	0	0	1	0	0	0	10153	1203	42	4	1815	4	MYO6	6	76576321	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	551894	76576321	94538746	95	51651										
HTR1B	0	genome.wustl.edu	37	chr6	78172401	78172401	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtcctgttgggcgtctgtttCaaaatccgggagcgggcttc	14	10	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	78172401	78172401	C	T	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	silent	c.720	p.L240	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	97	0	0	77	22	22.22	-	-	-	T	78172401	C	T	78172401	2	4	577	1	0	0	0	0	0	0	0	1	7491	825	29	2		2	HTR1B	6	78172401	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1596080	78172401	92942666	96	51652										
MDN1	0	genome.wustl.edu	37	chr6	90381945	90381945	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctttgctgctgtgccatcctCaccgtacgatttcagcctct	7	15	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	90381945	90381945	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.13768	p.E4590K	1.000	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	252	0	0	167	46	21.6	-	-	-	T	90381945	C	T	90381945	3	4	577	1	0	0	0	0	1	0	0	0	9486	835	29	2	3106	2	MDN1	6	90381945	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12209544	90381945	80733122	97	51653										
REV3L	0	genome.wustl.edu	37	chr6	111695851	111695851	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtacaaacttaacctcagcaCcagactgagattttattttt	5	9	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	111695851	111695851	C	G	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.3707	p.G1236A	0.881	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	164	0	0	109	64	36.78	-	-	-	G	111695851	C	G	111695851	3	3	577	1	0	0	0	0	1	0	0	0	13323	507	18	4	5765	4	REV3L	6	111695851	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	21313906	111695851	59419216	98	51654										
RSPH4A	0	genome.wustl.edu	37	chr6	116938343	116938343	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgtttttcaggaggaagactCaaacagtgactatgatttac	9	7	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	116938343	116938343	C	G	SNP	RSPH4A	ENST00000229554	human	ensembl	69_37n	1	known	nonsense	c.557	p.S186*	0.003	NULL	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	181	0	0	170	41	19.25	-	-	-	G	116938343	C	G	116938343	4	3	577	1	0	0	0	0	0	1	0	0	13792	838	29	2	559	2	RSPH4A	6	116938343	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5242492	116938343	54176724	99	51655										
DCBLD1	0	genome.wustl.edu	37	chr6	117846569	117846569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agacgtagcaggagacatttCtgggaatatggtagatggat	14	4	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	117846569	117846569	C	T	SNP	DCBLD1	ENST00000338728	human	ensembl	69_37n	1	known	missense	c.557	p.S186F	0.999	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465	320	0	0	244	62	20.26	-	-	-	T	117846569	C	T	117846569	3	4	577	1	0	0	0	0	1	0	0	0	4311	913	32	2	575	2	DCBLD1	6	117846569	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	908226	117846569	53268498	100	51656										
TAAR2	0	genome.wustl.edu	37	chr6	132939037	132939037	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accagcagttctccaccgatCtgatcatactatatggcatg	7	12	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	132939037	132939037	C	G	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	missense	c.308	p.R103T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Trace_amine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	253	1	0.39	183	53	22.46	-	-	-	G	132939037	C	G	132939037	3	3	577	1	0	0	0	0	1	0	0	0	15582	913	32	2	751	2	TAAR2	6	132939037	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15092468	132939037	38176030	101	51657										
STXBP5	0	genome.wustl.edu	37	chr6	147684754	147684754	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	caaaatattacagagacctcGtttgtgcttcgtggagatat	9	7	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	147684754	147684754	G	C	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	silent	c.2829	p.S943	0.009	pfam_Lgl_C,superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	171	0	0	157	26	14.13	-	-	-	C	147684754	G	C	147684754	2	2	577	1	0	0	0	0	0	0	0	1	15447	1132	40	3		3	STXBP5	6	147684754	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	14745717	147684754	23430313	102	51658										
ULBP3	0	genome.wustl.edu	37	chr6	150387087	150387087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gccagttccagtctgagcctCtgccccacctctctcagcat	7	18	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	150387087	150387087	C	G	SNP	ULBP3	ENST00000367339	human	ensembl	69_37n	-1	known	missense	c.300	p.Q100H	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP3	HGNC	ENSG00000131019	318	1	0.31	230	58	20.14	-	-	-	G	150387087	C	G	150387087	3	3	577	1	0	0	0	0	1	0	0	0	17071	912	32	2	445	2	ULBP3	6	150387087	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	2702333	150387087	20727980	103	51659										
SYNE1	0	genome.wustl.edu	37	chr6	152650988	152650988	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttctccttttccttgtgactCagcgcattcatgattctcaa	5	12	4	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	152650988	152650988	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.14832	p.L4944	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	439	1	0.23	369	70	15.95	-	-	-	T	152650988	C	T	152650988	2	4	577	1	0	0	0	0	0	0	0	1	15537	813	29	2		2	SYNE1	6	152650988	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	2263901	152650988	18464079	104	51660										
FNDC1	0	genome.wustl.edu	37	chr6	159653669	159653669	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	attcaggggccgcagaggaaGattccagtgcctcagcccca	12	13	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	159653669	159653669	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.2125	p.D709N	0.370	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	39	0	0	30	12	28.57	-	-	-	A	159653669	G	A	159653669	3	1	577	1	0	0	0	0	1	0	0	0	6014	942	33	2	2167	2	FNDC1	6	159653669	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	7002681	159653669	11461398	105	51661										
MLLT4	0	genome.wustl.edu	37	chr6	168307891	168307891	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgacagagtgtcgtctgcctCtagcacagccgagcggggaa	14	12	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	6	168307891	168307891	C	G	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.1691	p.S564C	0.985	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	171	0	0	155	41	20.92	-	-	-	G	168307891	C	G	168307891	3	3	577	1	0	0	0	0	1	0	0	0	9700	913	32	2	1741	2	MLLT4	6	168307891	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8654222	168307891	2807176	106	51662										
DNAH11	0	genome.wustl.edu	37	chr7	21599382	21599382	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agatttctggatgatgaggaGagaaaatctgtcatgcattt	11	4	3	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	21599382	21599382	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.854	p.R285T	0.006	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	223	0	0	192	48	19.92	-	-	-	C	21599382	G	C	21599382	3	2	577	1	0	0	0	0	1	0	0	0	4635	942	33	2	868	2	DNAH11	7	21599382	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		21599382	137539281	107	51663										
FKBP9	0	genome.wustl.edu	37	chr7	33035890	33035890	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccccctgactgctcagtgctGagtaagaagggagattacct	11	11	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	33035890	33035890	G	C	SNP	FKBP9	ENST00000538336	human	ensembl	69_37n	1	known	silent	c.1314	p.L438	0.977	pfam_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642	253	0	0	179	46	20.44	-	-	-	C	33035890	G	C	33035890	2	2	577	1	0	0	0	0	0	0	0	1	5961	1277	45	2		2	FKBP9	7	33035890	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	11436508	33035890	126102773	108	51664										
HECW1	0	genome.wustl.edu	37	chr7	43580831	43580831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cttcttgacgctttcttcacGaggcccttctacaaggcact	7	14	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	43580831	43580831	G	C	SNP	HECW1	ENST00000429529	human	ensembl	69_37n	1	putative	missense	c.260	p.R87P	0.504	pfam_HECT,superfamily_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,pfscan_HECT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HECW1	HGNC	ENSG00000002746	276	0	0	228	63	21.58	-	-	-	C	43580831	G	C	43580831	3	2	577	1	0	0	0	0	1	0	0	0	7093	1045	37	3	4179	3	HECW1	7	43580831	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	10544941	43580831	115557832	109	51665										
AUTS2	0	genome.wustl.edu	37	chr7	69064930	69064930	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tttgccatgaccagctttgtCacttttgaagcgctggaggt	11	9	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	69064930	69064930	C	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	silent	c.291	p.V97	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	26	0	0	12	4	25	-	-	-	T	69064930	C	T	69064930	2	4	577	1	0	0	0	0	0	0	0	1	1229	813	29	2		2	AUTS2	7	69064930	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	25484099	69064930	90073733	110	51666										
AKAP9	0	genome.wustl.edu	37	chr7	91709273	91709273	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agcattaaccttgagaatatCagaattagaaagccaggttg	9	6	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	91709273	91709273	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.7862	p.S2621L	0.995	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	158	0	0	163	21	11.41	-	-	-	T	91709273	C	T	91709273	3	4	577	1	0	0	0	0	1	0	0	0	459	838	29	2	7948	2	AKAP9	7	91709273	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	22644343	91709273	67429390	111	51667										
SLC26A5	0	genome.wustl.edu	37	chr7	103020959	103020959	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtctatatcaatatacacatCagtttcaggaagctttccaa	5	9	4	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	103020959	103020959	C	T	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	missense	c.1552	p.D518N	0.999	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	307	0	0	258	56	17.83	-	-	-	T	103020959	C	T	103020959	3	4	577	1	0	0	0	0	1	0	0	0	14609	826	29	2	747	2	SLC26A5	7	103020959	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	11311686	103020959	56117704	112	51668										
NRCAM	0	genome.wustl.edu	37	chr7	107820851	107820851	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgtttcttttagatgaactCtgggtcttccaatagtaaat	7	7	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	107820851	107820851	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	silent	c.2667	p.Q889	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	188	0	0	132	26	16.46	-	-	-	T	107820851	C	T	107820851	2	4	577	1	0	0	0	0	0	0	0	1	10717	912	32	2		2	NRCAM	7	107820851	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4799892	107820851	51317812	113	51669										
WASL	0	genome.wustl.edu	37	chr7	123324635	123324635	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atcttcatcttcatcttcatCtacaagaaaatcaagacaat	2	10	8	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	123324635	123324635	C	G	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	splice_site	c.1457-1	e11-1	1.000	-	-	-	no_errors	WASL	HGNC	ENSG00000106299	297	0	0	234	47	16.73	-	-	-	G	123324635	C	G	123324635	5	3	577	1	0	0	0	0	0	0	1	0	17353	927	32	2	65	2	WASL	7	123324635	Splice_Site	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15503784	123324635	35814028	114	51670										
PLXNA4	0	genome.wustl.edu	37	chr7	132174147	132174147	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgcggtccctgtcctccgtGaagacgggaattccacgcac	11	14	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	132174147	132174147	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.1275	p.F425	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	157	1	0.63	139	27	16.27	-	-	-	A	132174147	G	A	132174147	2	1	577	1	0	0	0	0	0	0	0	1	12196	1281	45	2		2	PLXNA4	7	132174147	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8849512	132174147	26964516	115	51671										
TRIM24	0	genome.wustl.edu	37	chr7	138210052	138210052	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gatacactaatcaccaaactGatggaaaaaacaaaatacat	4	8	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	138210052	138210052	G	A	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	silent	c.831	p.L277	0.999	smart_Bbox_C	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	152	0	0	120	31	20.53	-	-	-	A	138210052	G	A	138210052	2	1	577	1	0	0	0	0	0	0	0	1	16594	1277	45	2		2	TRIM24	7	138210052	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6035905	138210052	20928611	116	51672										
HIPK2	0	genome.wustl.edu	37	chr7	139288862	139288862	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgctgggtgcctgccatggtCtcgggaatcacggtggcatg	16	10	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	139288862	139288862	C	G	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.2220	p.E740D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	82	0	0	51	12	19.05	-	-	-	G	139288862	C	G	139288862	3	3	577	1	0	0	0	0	1	0	0	0	7168	912	32	2	1400	2	HIPK2	7	139288862	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1078810	139288862	19849801	117	51673										
MGAM	0	genome.wustl.edu	37	chr7	141705408	141705408	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgcttgtgttgtttatcatCagtattgttctaattgtgct	8	6	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	141705408	141705408	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.78	p.I26	0.118	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	428	0	0	357	73	16.98	-	-	-	T	141705408	C	T	141705408	2	4	577	1	0	0	0	0	0	0	0	1	9612	816	29	2		2	MGAM	7	141705408	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	2416546	141705408	17433255	118	51674										
MLL3	0	genome.wustl.edu	37	chr7	151878971	151878971	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agggccttttgcagtttgttCtgaaactacaggagaccggg	13	8	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	151878971	151878971	C	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.5974	p.E1992Q	0.996	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	198	0	0	140	49	25.93	-	-	-	G	151878971	C	G	151878971	3	3	577	1	0	0	0	0	1	0	0	0	9693	922	32	2	8857	2	MLL3	7	151878971	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10173563	151878971	7259692	119	51675										
ESYT2	0	genome.wustl.edu	37	chr7	158560422	158560422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gattcgattgggaagcaccaGatagtttgatattatatcca	9	6	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	7	158560422	158560422	G	C	SNP	ESYT2	ENST00000251527	human	ensembl	69_37n	-1	known	missense	c.991	p.L331V	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	ESYT2	HGNC	ENSG00000117868	174	0	0	132	24	15.38	-	-	-	C	158560422	G	C	158560422	3	2	577	1	0	0	0	0	1	0	0	0	5302	933	33	2	1750	2	ESYT2	7	158560422	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6681451	158560422	578241	120	51676										
LOXL2	0	genome.wustl.edu	37	chr8	23177557	23177557	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tagggattgcggccgccgttCaggcgcagctgcagacacaa	14	12	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	23177557	23177557	C	T	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	silent	c.1311	p.L437	1.000	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	163	0	0	83	59	41.26	-	-	-	T	23177557	C	T	23177557	2	4	577	1	0	0	0	0	0	0	0	1	8966	813	29	2		2	LOXL2	8	23177557	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		23177557	123186465	121	51677										
NCOA2	0	genome.wustl.edu	37	chr8	71069225	71069225	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagtgcatagttactaccctGaggagtggttgcttgcatgc	13	8	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	71069225	71069225	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	nonsense	c.1375	p.Q459*	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	491	0	0	368	89	19.43	-	-	-	A	71069225	G	A	71069225	4	1	577	1	0	0	0	0	0	1	0	0	10301	1299	45	2	3071	2	NCOA2	8	71069225	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	47891668	71069225	75294797	122	51678										
ZNF704	0	genome.wustl.edu	37	chr8	81599539	81599539	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgccgtcgtctggctgcgcGgggctgcggaagggcttgaa	18	10	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	81599539	81599539	G	A	SNP	ZNF704	ENST00000327835	human	ensembl	69_37n	-1	known	silent	c.480	p.P160	0.298	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	12	0	0	7	4	36.36	-	-	-	A	81599539	G	A	81599539	2	1	577	1	0	0	0	0	0	0	0	1	18203	1103	39	1		1	ZNF704	8	81599539	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	10530314	81599539	64764483	123	51679										
CSMD3	0	genome.wustl.edu	37	chr8	113364680	113364680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttgatcacactgaaaggataCtacatctccaaccatatatc	4	11	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	113364680	113364680	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.6220	p.V2074I	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	188	0	0	137	66	32.51	-	-	-	T	113364680	C	T	113364680	3	4	577	1	0	0	0	0	1	0	0	0	3978	565	20	4	5035	4	CSMD3	8	113364680	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	31765141	113364680	32999342	124	51680										
ZNF623	0	genome.wustl.edu	37	chr8	144732325	144732325	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tccagacaggagagacagctCaagtgtgcaccaagtcagga	12	10	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	144732325	144732325	C	G	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	missense	c.283	p.Q95E	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	78	0	0	56	15	21.13	-	-	-	G	144732325	C	G	144732325	3	3	577	1	0	0	0	0	1	0	0	0	18143	827	29	2	285	2	ZNF623	8	144732325	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	31367645	144732325	1631697	125	51681										
ZNF623	0	genome.wustl.edu	37	chr8	144732550	144732550	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctcacaccttatggagcatCagagaattcacactggagag	10	10	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	144732550	144732550	C	T	SNP	ZNF623	ENST00000501748	human	ensembl	69_37n	1	known	nonsense	c.508	p.Q170*	0.941	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309	137	0	0	132	32	19.51	-	-	-	T	144732550	C	T	144732550	4	4	577	1	0	0	0	0	0	1	0	0	18143	827	29	2	510	2	ZNF623	8	144732550	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	225	144732550	1631472	126	51682										
HEATR7A	0	genome.wustl.edu	37	chr8	145246704	145246704	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagcagctgcccaagctcctCcctgggattctcgccctcta	9	17	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	145246704	145246704	C	T	SNP	HEATR7A	ENST00000326134	human	ensembl	69_37n	1	known	silent	c.801	p.L267	0.997	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR7A	HGNC	ENSG00000179832	74	0	0	55	8	12.7	-	-	-	T	145246704	C	T	145246704	2	4	577	1	0	0	0	0	0	0	0	1	7085	842	30	2		2	HEATR7A	8	145246704	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	514154	145246704	1117318	127	51683										
ZNF34	0	genome.wustl.edu	37	chr8	145999827	145999827	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgctgctctccccgttggtCagtgtgactgccctggggcc	13	15	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	8	145999827	145999827	C	T	SNP	ZNF34	ENST00000343459	human	ensembl	69_37n	-1	known	silent	c.507	p.L169	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378	180	0	0	85	57	40.14	-	-	-	T	145999827	C	T	145999827	2	4	577	1	0	0	0	0	0	0	0	1	17952	813	29	2		2	ZNF34	8	145999827	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	753123	145999827	364195	128	51684										
C9orf131	0	genome.wustl.edu	37	chr9	35043842	35043842	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agagagagagttccctggaaGatccatccagatataagccc	10	10	0	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	35043842	35043842	G	A	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.1216	p.D406N	0.002	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	100	0	0	53	19	26.03	-	-	-	A	35043842	G	A	35043842	3	1	577	1	0	0	0	0	1	0	0	0	2482	942	33	2	1238	2	C9orf131	9	35043842	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		35043842	106169589	129	51685										
FRMPD1	0	genome.wustl.edu	37	chr9	37692653	37692653	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aggtaaatggaagagctggaGaccagtttattccagacacg	12	7	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	37692653	37692653	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	silent	c.15	p.E5	0.702	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	163	0	0	76	20	20.83	-	-	-	A	37692653	G	A	37692653	2	1	577	1	0	0	0	0	0	0	0	1	6106	933	33	2		2	FRMPD1	9	37692653	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2648811	37692653	103520778	130	51686										
ALDH1A1	0	genome.wustl.edu	37	chr9	75516128	75516128	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cactcttgtattttctttatGagttcttctgagagattttc	6	7	4	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	75516128	75516128	G	A	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	missense	c.1502	p.S501L	1.000	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	489	0	0	360	94	20.7	-	-	-	A	75516128	G	A	75516128	3	1	577	1	0	0	0	0	1	0	0	0	490	1294	45	2	7	2	ALDH1A1	9	75516128	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	37823475	75516128	65697303	131	51687										
ZNF618	0	genome.wustl.edu	37	chr9	116811020	116811020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgttgagggtcatgtgtgccGacctgggtgcactgagcgtg	17	8	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	116811020	116811020	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	missense	c.1438	p.D480N	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	111	1	0.89	90	34	27.42	-	-	-	A	116811020	G	A	116811020	3	1	577	1	0	0	0	0	1	0	0	0	18138	1058	37	1	1213	1	ZNF618	9	116811020	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	41294892	116811020	24402411	132	51688										
TLR4	0	genome.wustl.edu	37	chr9	120474783	120474783	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gggagccttttctggactatCaagtttacagaagctggtgg	13	7	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	120474783	120474783	C	G	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	nonsense	c.377	p.S126*	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	171	0	0	111	26	18.84	-	-	-	G	120474783	C	G	120474783	4	3	577	1	0	0	0	0	0	1	0	0	16048	838	29	2	387	2	TLR4	9	120474783	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3663763	120474783	20738648	133	51689										
GOLGA2	0	genome.wustl.edu	37	chr9	131023779	131023779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gccgccacatggcgctctctCctttgagattctccgcatat	8	15	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	131023779	131023779	C	A	SNP	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	missense	c.1205	p.G402V	0.887	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	175	0	0	223	36	13.9	-	-	-	A	131023779	C	A	131023779	3	1	577	1	0	0	0	0	1	0	0	0	6604	855	30	2	1851	2	GOLGA2	9	131023779	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10548996	131023779	10189652	134	51690										
FAM73B	0	genome.wustl.edu	37	chr9	131830567	131830567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accctccggcctcggtgctcGccgtcctgcggaaccgctgg	13	18	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	131830567	131830567	G	A	SNP	FAM73B	ENST00000358369	human	ensembl	69_37n	1	known	missense	c.1360	p.A454T	0.997	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343	61	0	0	48	25	34.25	-	-	-	A	131830567	G	A	131830567	3	1	577	1	0	0	0	0	1	0	0	0	5663	1087	38	1	1406	1	FAM73B	9	131830567	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	806788	131830567	9382864	135	51691										
ASB6	0	genome.wustl.edu	37	chr9	132402823	132402823	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccggggctctcgctgaccttCaaagttgagattggccccat	11	13	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	132402823	132402823	C	T	SNP	ASB6	ENST00000277458	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB6	HGNC	ENSG00000148331	44	0	0	46	8	14.81	-	-	-	T	132402823	C	T	132402823	3	4	577	1	0	0	0	0	1	0	0	0	1031	835	29	2	993	2	ASB6	9	132402823	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	572256	132402823	8810608	136	51692										
USP20	0	genome.wustl.edu	37	chr9	132637592	132637592	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccctcctcaccccacaggaaGagcagcgaggaggccatgcg	12	16	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	9	132637592	132637592	G	A	SNP	USP20	ENST00000315480	human	ensembl	69_37n	1	known	silent	c.2052	p.K684	1.000	pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP20	HGNC	ENSG00000136878	28	0	0	25	6	19.35	-	-	-	A	132637592	G	A	132637592	2	1	577	1	0	0	0	0	0	0	0	1	17149	933	33	2		2	USP20	9	132637592	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	234769	132637592	8575839	137	51693										
NEBL	0	genome.wustl.edu	37	chr10	21134276	21134276	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccttcctttaatctccttctCaaaatcctctttgtaaactt	1	13	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	21134276	21134276	C	G	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	missense	c.1138	p.E380Q	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	351	0	0	251	71	22.05	-	-	-	G	21134276	C	G	21134276	3	3	577	1	0	0	0	0	1	0	0	0	10375	835	29	2	1974	2	NEBL	10	21134276	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		21134276	114400471	138	51694										
PDSS1	0	genome.wustl.edu	37	chr10	26994296	26994296	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aaactcggttggagagacttGaaaggtctgtatgaggacat	13	5	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	26994296	26994296	G	C	SNP	PDSS1	ENST00000376215	human	ensembl	69_37n	1	known	missense	c.309	p.L103F	1.000	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS1	HGNC	ENSG00000148459	233	0	0	195	38	16.31	-	-	-	C	26994296	G	C	26994296	3	2	577	1	0	0	0	0	1	0	0	0	11766	1281	45	2	323	2	PDSS1	10	26994296	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	5860020	26994296	108540451	139	51695										
FAM21A	0	genome.wustl.edu	37	chr10	51827768	51827768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccgagccgggcggctaggatGgtgagggcgccgggcaggag	22	10	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	51827768	51827768	G	A	SNP	FAM21A	ENST00000282633	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.993	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290	16	0	0	11	5	31.25	-	-	-	A	51827768	G	A	51827768	3	1	577	1	0	0	0	0	1	0	0	0	5582	1362	47	4	5	4	FAM21A	10	51827768	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	24833472	51827768	83706979	140	51696										
A1CF	0	genome.wustl.edu	37	chr10	52595937	52595937	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctgcagcgcttgggtagacGatgacatcgacaacaccttc	10	12	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	52595937	52595937	G	A	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	silent	c.501	p.I167	0.615	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	239	0	0	174	36	17.06	-	-	-	A	52595937	G	A	52595937	2	1	577	1	0	0	0	0	0	0	0	1	2	1048	37	1		1	A1CF	10	52595937	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	768169	52595937	82938810	141	51697										
AS3MT	0	genome.wustl.edu	37	chr10	104638240	104638240	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgccaatctcattacaattCaaaacaaggaactggaaaga	6	9	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	104638240	104638240	C	T	SNP	AS3MT	ENST00000369880	human	ensembl	69_37n	1	known	nonsense	c.715	p.Q239*	0.898	NULL	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435	293	0	0	274	36	11.58	-	-	-	T	104638240	C	T	104638240	4	4	577	1	0	0	0	0	0	1	0	0	1009	827	29	2	745	2	AS3MT	10	104638240	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	52042303	104638240	30896507	142	51698										
SLC25A22	0	genome.wustl.edu	37	chr11	792383	792383	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gacacgtagaaaggcgacttCtcctcggacgccgggcggcc	14	14	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	792383	792383	C	G	SNP	SLC25A22	ENST00000320230	human	ensembl	69_37n	-1	known	missense	c.663	p.E221D	0.811	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542	55	0	0	44	6	12	-	-	-	G	792383	C	G	792383	3	3	577	1	0	0	0	0	1	0	0	0	14574	912	32	2	320	2	SLC25A22	11	792383	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		792383	134214133	143	51699										
CD151	0	genome.wustl.edu	37	chr11	837971	837971	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atcaccaagttggagaccttCatccaggagcacctgagggt	11	11	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	837971	837971	C	A	SNP	CD151	ENST00000322008	human	ensembl	69_37n	1	known	missense	c.645	p.F215L	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD151	HGNC	ENSG00000177697	352	1	0.28	178	56	23.93	-	-	-	A	837971	C	A	837971	3	1	577	1	0	0	0	0	1	0	0	0	2994	825	29	2	667	2	CD151	11	837971	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	45588	837971	134168545	144	51700										
DNHD1	0	genome.wustl.edu	37	chr11	6541509	6541509	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aagacctcctcggattccctGtattctgaaggtatttaggg	10	9	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	6541509	6541509	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.1827	p.L609	0.001	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	189	0	0	112	71	38.8	-	-	-	A	6541509	G	A	6541509	2	1	577	1	0	0	0	0	0	0	0	1	4703	1364	48	4		4	DNHD1	11	6541509	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	5703538	6541509	128465007	145	51701										
ILK	0	genome.wustl.edu	37	chr11	6631267	6631267	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgcctgggtagcccccgaagGtgagtgaagtcatcatgtcg	14	10	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	6631267	6631267	G	A	SNP	ILK	ENST00000299421	human	ensembl	69_37n	1	known	splice_site	c.1078+1	e10+1	1.000	-	-	-	no_errors	ILK	HGNC	ENSG00000166333	115	0	0	119	14	10.53	-	-	-	A	6631267	G	A	6631267	5	1	577	1	0	0	0	0	0	0	1	0	7767	1275	44	4	1117	4	ILK	11	6631267	Splice_Site	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	89758	6631267	128375249	146	51702										
ZNF143	0	genome.wustl.edu	37	chr11	9546936	9546936	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acccagattgcagttcaggtGagtaccaaggcatactgtcc	10	11	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	9546936	9546936	G	A	SNP	ZNF143	ENST00000447186	human	ensembl	69_37n	1	putative	missense	c.412	p.E138K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF143	HGNC	ENSG00000166478	322	0	0	249	76	23.38	-	-	-	A	9546936	G	A	9546936	3	1	577	1	0	0	0	0	1	0	0	0	17828	1305	45	2		2	ZNF143	11	9546936	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2915669	9546936	125459580	147	51703										
MRVI1	0	genome.wustl.edu	37	chr11	10622555	10622555	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cttctcatacgtcctctttaGattctccacatactgcatca	3	14	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	10622555	10622555	G	C	SNP	MRVI1	ENST00000421747	human	ensembl	69_37n	-1	known	missense	c.1900	p.L634V	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952	252	0	0	185	50	21.28	-	-	-	C	10622555	G	C	10622555	3	2	577	1	0	0	0	0	1	0	0	0	9925	933	33	2	839	2	MRVI1	11	10622555	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1075619	10622555	124383961	148	51704										
C11orf58	0	genome.wustl.edu	37	chr11	16776434	16776434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttaggtagaagaccatgatgGagaaggtgatgtggctggag	17	3	0	5			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	16776434	16776434	G	C	SNP	C11orf58	ENST00000228136	human	ensembl	69_37n	1	known	missense	c.335	p.G112A	1.000	NULL	NULL	-	no_errors	C11orf58	HGNC	ENSG00000110696	204	0	0	159	36	18.37	-	-	-	C	16776434	G	C	16776434	3	2	577	1	0	0	0	0	1	0	0	0	1662	1174	41	2	353	2	C11orf58	11	16776434	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6153879	16776434	118230082	149	51705										
WT1	0	genome.wustl.edu	37	chr11	32414250	32414250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtcttttgagctggtctgaaCgagaaaaccttcgttcacag	10	9	3	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	32414250	32414250	C	T	SNP	WT1	ENST00000332351	human	ensembl	69_37n	-1	known	missense	c.1301	p.R434H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,prints_Wilms_tumour,pfscan_Znf_C2H2	-	no_errors	WT1	HGNC	ENSG00000184937	331	0	0	180	142	43.96	-	-	-	T	32414250	C	T	32414250	3	4	577	1	0	0	0	0	1	0	0	0	17505	536	19	1	264	1	WT1	11	32414250	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15637816	32414250	102592266	150	51706										
OR1S2	0	genome.wustl.edu	37	chr11	57971065	57971065	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgaacaggacagtttgagcaGaggggccaagtcacagaaga	14	7	1	5			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	57971065	57971065	G	C	SNP	OR1S2	ENST00000302592	human	ensembl	69_37n	-1	known	missense	c.589	p.L197V	0.039	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	543	0	0	114	244	67.97	-	-	-	C	57971065	G	C	57971065	3	2	577	1	0	0	0	0	1	0	0	0	11046	933	33	2	391	2	OR1S2	11	57971065	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	25556815	57971065	77035451	151	51707										
GLYATL1	0	genome.wustl.edu	37	chr11	58714563	58714563	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctgaagcatcccacagaatGatcctactgaataactccca	5	13	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	58714563	58714563	G	A	SNP	GLYATL1	ENST00000317391	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	pfam_Glycine_N-acyltransferase_N	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840	422	0	0	194	99	33.79	-	-	-	A	58714563	G	A	58714563	3	1	577	1	0	0	0	0	1	0	0	0	6532	1305	45	2		2	GLYATL1	11	58714563	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	743498	58714563	76291953	152	51708										
VWCE	0	genome.wustl.edu	37	chr11	61026446	61026446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccctggggaagctagaggtaGagtgggggctcctggagggg	21	7	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	61026446	61026446	G	C	SNP	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	missense	c.2569	p.L857V	0.978	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	85	0	0	24	17	41.46	-	-	-	C	61026446	G	C	61026446	3	2	577	1	0	0	0	0	1	0	0	0	17342	933	33	2	302	2	VWCE	11	61026446	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2311883	61026446	73980070	153	51709										
ARAP1	0	genome.wustl.edu	37	chr11	72409112	72409112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gcgtcccagccgctcaaaatCccgggccagcagatcctcgg	11	17	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	72409112	72409112	C	T	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.2581	p.D861N	0.652	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	40	0	0	25	9	26.47	-	-	-	T	72409112	C	T	72409112	3	4	577	1	0	0	0	0	1	0	0	0	840	855	30	2	1839	2	ARAP1	11	72409112	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	11382666	72409112	62597404	154	51710										
PGM2L1	0	genome.wustl.edu	37	chr11	74062496	74062496	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcctgcagagggtctctcttCagcgggctggtatccactaa	11	12	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	74062496	74062496	C	G	SNP	PGM2L1	ENST00000298198	human	ensembl	69_37n	-1	known	silent	c.681	p.L227	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III	-	no_errors	PGM2L1	HGNC	ENSG00000165434	249	0	0	219	33	13.04	-	-	-	G	74062496	C	G	74062496	2	3	577	1	0	0	0	0	0	0	0	1	11873	813	29	2		2	PGM2L1	11	74062496	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1653384	74062496	60944020	155	51711										
CCDC82	0	genome.wustl.edu	37	chr11	96117522	96117522	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agatcattatcctcttgactTaaatgtttttcctgatcttg	5	8	3	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	96117522	96117522	T	A	SNP	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	missense	c.390	p.L130F	0.000	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	612	2	0.33	160	291	64.52	-	-	-	A	96117522	T	A	96117522	3	1	577	1	0	0	0	0	1	0	0	0	2883	1751	61	5	1272	5	CCDC82	11	96117522	Missense_Mutation	SNP	T	TCGA-BH-A18P-01A-11D-A12B-09	22055026	96117522	38888994	156	51712										
ACAT1	0	genome.wustl.edu	37	chr11	108002665	108002665	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtggaacggagttatgtatCaaaacccactttgaaggtaa	10	6	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	108002665	108002665	C	T	SNP	ACAT1	ENST00000265838	human	ensembl	69_37n	1	known	missense	c.104	p.S35L	0.991	NULL	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT1	HGNC	ENSG00000075239	85	0	0	29	8	21.62	-	-	-	T	108002665	C	T	108002665	3	4	577	1	0	0	0	0	1	0	0	0	121	838	29	2	110	2	ACAT1	11	108002665	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	11885143	108002665	27003851	157	51713										
UBE4A	0	genome.wustl.edu	37	chr11	118255641	118255642	+	Frame_Shift_Del	DEL	TT	TT	-													0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatgaatgatgccatcttccTtttggatgaagccatacagg							TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	118255641	118255642	TT	-	DEL	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	frame_shift_del	c.2414_2415	p.L806fs	1.000:0.986	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	118	0	0	29	49	62.82	-	-	-	-	118255642	TT	-	118255641	7	5	577	1	0	1	0	1	0	0	0	0	16979	1609	56	0	2468	0	UBE4A	11	118255641	Frame_Shift_Del	DEL	TT	TCGA-BH-A18P-01A-11D-A12B-09	10252976	118255641	16750875	158	51714										
ZBTB44	0	genome.wustl.edu	37	chr11	130131407	130131407	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgcttgatttcatgaactctGagcaggtgctggcaacactg	11	9	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	11	130131407	130131407	G	A	SNP	ZBTB44	ENST00000357899	human	ensembl	69_37n	-1	known	missense	c.362	p.S121L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB44	HGNC	ENSG00000196323	176	0	0	61	39	39	-	-	-	A	130131407	G	A	130131407	3	1	577	1	0	0	0	0	1	0	0	0	17641	1294	45	2	1019	2	ZBTB44	11	130131407	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	11875766	130131407	4875109	159	51715										
NINJ2	0	genome.wustl.edu	37	chr12	675158	675158	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gatgaccacctgcaggagcaGagagaggctgatgagggtga	17	7	0	6			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	675158	675158	G	A	SNP	NINJ2	ENST00000305108	human	ensembl	69_37n	-1	known	silent	c.358	p.L120	1.000	pfam_Ninjurin	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840	155	0	0	125	27	17.76	-	-	-	A	675158	G	A	675158	2	1	577	1	0	0	0	0	0	0	0	1	10491	933	33	2		2	NINJ2	12	675158	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		675158	133176737	160	51716										
NOP2	0	genome.wustl.edu	37	chr12	6677069	6677069	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccgcttctccttcgtagggtCcaacttgcgccccatggtac	9	16	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	6677069	6677069	C	G	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.16	p.D6H	1.000	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	79	0	0	52	23	30.67	-	-	-	G	6677069	C	G	6677069	3	3	577	1	0	0	0	0	1	0	0	0	10610	855	30	2	2470	2	NOP2	12	6677069	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	6001911	6677069	127174826	161	51717										
HIST4H4	0	genome.wustl.edu	37	chr12	14923905	14923905	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttgacgcccccacgtcgggcGagacggcgaatcgccggctt	14	15	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	14923905	14923905	G	T	SNP	HIST4H4	ENST00000358064	human	ensembl	69_37n	-1	known	silent	c.114	p.L38	0.231	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST4H4	HGNC	ENSG00000197837	70	0	0	64	16	20	-	-	-	T	14923905	G	T	14923905	2	4	577	1	0	0	0	0	0	0	0	1	7236	1045	37	3		3	HIST4H4	12	14923905	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8246836	14923905	118927990	162	51718										
DENND5B	0	genome.wustl.edu	37	chr12	31545273	31545273	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cccatggtggaaaacttgctCaagggctgcaaccaggccat	11	12	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	31545273	31545273	C	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.3499	p.E1167Q	1.000	pfam_Run,pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	102	0	0	62	37	37	-	-	-	G	31545273	C	G	31545273	3	3	577	1	0	0	0	0	1	0	0	0	4473	835	29	2	442	2	DENND5B	12	31545273	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	16621368	31545273	102306622	163	51719										
C12orf40	0	genome.wustl.edu	37	chr12	40041721	40041721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tatttcaaaactaaatttcaCatctggaatagcacctactc	3	10	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	40041721	40041721	C	T	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.512	p.T171I	0.001	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	231	0	0	168	32	16	-	-	-	T	40041721	C	T	40041721	3	4	577	1	0	0	0	0	1	0	0	0	1698	478	17	4	534	4	C12orf40	12	40041721	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8496448	40041721	93810174	164	51720										
RPAP3	0	genome.wustl.edu	37	chr12	48062806	48062806	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aagaacagttgtggcaaactGagcaggtttttgttctatct	10	6	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	48062806	48062806	G	A	SNP	RPAP3	ENST00000005386	human	ensembl	69_37n	-1	known	nonsense	c.1606	p.Q536*	0.032	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175	539	0	0	358	88	19.73	-	-	-	A	48062806	G	A	48062806	4	1	577	1	0	0	0	0	0	1	0	0	13629	1299	45	2	407	2	RPAP3	12	48062806	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8021085	48062806	85789089	165	51721										
DIP2B	0	genome.wustl.edu	37	chr12	51097988	51097988	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttcatccgatcaggattgctGgggtttgtagggccggtaag	15	7	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	51097988	51097988	G	T	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	silent	c.2391	p.L797	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	523	1	0.19	259	219	45.82	-	-	-	T	51097988	G	T	51097988	2	4	577	1	0	0	0	0	0	0	0	1	4564	1335	47	4		4	DIP2B	12	51097988	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3035182	51097988	82753907	166	51722										
SCN8A	0	genome.wustl.edu	37	chr12	52180367	52180367	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcgccatcccctccatcatGaatgtgctgctggtgtgtct	11	13	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	52180367	52180367	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.3984	p.M1328I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	217	0	0	202	40	16.39	-	-	-	A	52180367	G	A	52180367	3	1	577	1	0	0	0	0	1	0	0	0	14012	1290	45	2	4066	2	SCN8A	12	52180367	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1082379	52180367	81671528	167	51723										
ERBB3	0	genome.wustl.edu	37	chr12	56482607	56482607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgatggatttgtgaactgcaCcaagatcctgggcaacctgg	12	9	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	56482607	56482607	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1064	p.T355I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	218	0	0	108	151	58.08	-	-	-	T	56482607	C	T	56482607	3	4	577	1	0	0	0	0	1	0	0	0	5245	507	18	4	1229	4	ERBB3	12	56482607	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4302240	56482607	77369288	168	51724										
SLC39A5	0	genome.wustl.edu	37	chr12	56626564	56626564	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tggaagagtcaaaggcccctCacctaccccgtgggccagcc	11	16	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	56626564	56626564	C	T	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	missense	c.379	p.H127Y	0.000	NULL	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	75	0	0	99	12	10.81	-	-	-	T	56626564	C	T	56626564	3	4	577	1	0	0	0	0	1	0	0	0	14710	826	29	2	385	2	SLC39A5	12	56626564	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	143957	56626564	77225331	169	51725										
LRP1	0	genome.wustl.edu	37	chr12	57599437	57599437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgctcggaacttcatgaagaCgcacaacacctgcaaggccg	10	14	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	57599437	57599437	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.11567	p.T3856M	0.945	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	85	0	0	81	33	28.7	-	-	-	T	57599437	C	T	57599437	3	4	577	1	0	0	0	0	1	0	0	0	9017	536	19	1	11865	1	LRP1	12	57599437	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	972873	57599437	76252458	170	51726										
DEPDC4	0	genome.wustl.edu	37	chr12	100660753	100660753	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttcctggaacttggcccgttCagccctgggcccggaagctc	12	15	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	100660753	100660753	C	G	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	silent	c.102	p.L34	0.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	70	0	0	40	12	23.08	-	-	-	G	100660753	C	G	100660753	2	3	577	1	0	0	0	0	0	0	0	1	4477	813	29	2		2	DEPDC4	12	100660753	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	43061316	100660753	33191142	171	51727										
SLC17A8	0	genome.wustl.edu	37	chr12	100813924	100813924	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaatgaagagagaaacttctCaactatatcctaatgtctga	7	7	2	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	100813924	100813924	C	G	SNP	SLC17A8	ENST00000323346	human	ensembl	69_37n	1	known	nonsense	c.1757	p.S586*	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	150	0	0	99	27	21.43	-	-	-	G	100813924	C	G	100813924	4	3	577	1	0	0	0	0	0	1	0	0	14512	838	29	2	1803	2	SLC17A8	12	100813924	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	153171	100813924	33037971	172	51728										
GAS2L3	0	genome.wustl.edu	37	chr12	101018311	101018311	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctcctgtaaaagccacacaGaaatcaaaagataagaatat	5	8	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	101018311	101018311	G	A	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	silent	c.1728	p.Q576	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	135	0	0	69	50	42.02	-	-	-	A	101018311	G	A	101018311	2	1	577	1	0	0	0	0	0	0	0	1	6298	933	33	2		2	GAS2L3	12	101018311	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	204387	101018311	32833584	173	51729										
TPCN1	0	genome.wustl.edu	37	chr12	113704123	113704123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgctgctgctctccctgtgcGaggcccccgccgtccccgca	11	20	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	113704123	113704123	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	46	0	0	44	9	16.98	-	-	-	A	113704123	G	A	113704123	3	1	577	1	0	0	0	0	1	0	0	0	16491	1059	37	1	606	1	TPCN1	12	113704123	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	12685812	113704123	20147772	174	51730										
CIT	0	genome.wustl.edu	37	chr12	120166328	120166328	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcttccagaagcctctgtttGagctctcgttcagtctccag	8	13	5	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	120166328	120166328	G	A	SNP	CIT	ENST00000392520	human	ensembl	69_37n	-1	novel	missense	c.2327	p.S776L	1.000	NULL	pfam_Citron,pfam_Pkinase_C,superfamily_HR1_rho-bd,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CIT	HGNC	ENSG00000122966	392	0	0	281	66	18.97	-	-	-	A	120166328	G	A	120166328	3	1	577	1	0	0	0	0	1	0	0	0	3468	1277	45	2	2723	2	CIT	12	120166328	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6462205	120166328	13685567	175	51731										
PUS1	0	genome.wustl.edu	37	chr12	132426061	132426061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgcagaaggggccgcaggatCccagtgcctgccgctacatc	13	15	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	12	132426061	132426061	C	T	SNP	PUS1	ENST00000376649	human	ensembl	69_37n	1	known	missense	c.769	p.P257S	1.000	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192	170	0	0	123	28	18.42	-	-	-	T	132426061	C	T	132426061	3	4	577	1	0	0	0	0	1	0	0	0	12913	855	30	2	787	2	PUS1	12	132426061	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12259733	132426061	1425834	176	51732										
ATP12A	0	genome.wustl.edu	37	chr13	25264553	25264553	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtgggggacattgtggaggtCaaaggaggagaccagatccc	17	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	25264553	25264553	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	69_37n	1	known	silent	c.624	p.V208	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP12A	HGNC	ENSG00000075673	133	0	0	102	23	18.25	-	-	-	T	25264553	C	T	25264553	2	4	577	1	0	0	0	0	0	0	0	1	1126	813	29	2		2	ATP12A	13	25264553	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		25264553	89905325	177	51733										
FLT1	0	genome.wustl.edu	37	chr13	29005385	29005385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcaatagtaagaacactgtaGaatatgttggcatgggaatt	10	4	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	29005385	29005385	G	C	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.876	p.F292L	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	346	0	0	266	72	21.3	-	-	-	C	29005385	G	C	29005385	3	2	577	1	0	0	0	0	1	0	0	0	5987	933	33	2	3499	2	FLT1	13	29005385	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3740832	29005385	86164493	178	51734										
LRCH1	0	genome.wustl.edu	37	chr13	47127578	47127578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acctttcgtcccggccctttCggtagctactctgcacccac	7	18	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	47127578	47127578	C	T	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	missense	c.47	p.S16L	0.016	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	29	0	0	17	5	22.73	-	-	-	T	47127578	C	T	47127578	3	4	577	1	0	0	0	0	1	0	0	0	8998	893	31	1	49	1	LRCH1	13	47127578	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	18122193	47127578	68042300	179	51735										
KPNA3	0	genome.wustl.edu	37	chr13	50276031	50276031	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatgaggcagggatcttcatCaatctgtaaaaaacaagaaa	8	6	4	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	50276031	50276031	C	T	SNP	KPNA3	ENST00000261667	human	ensembl	69_37n	-1	known	missense	c.1471	p.D491N	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753	198	0	0	156	44	21.89	-	-	-	T	50276031	C	T	50276031	3	4	577	1	0	0	0	0	1	0	0	0	8484	826	29	2	98	2	KPNA3	13	50276031	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3148453	50276031	64893847	180	51736										
WDFY2	0	genome.wustl.edu	37	chr13	52325491	52325491	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gcacagcacacgcgacaattGatctcctgtggcggtgatgg	13	11	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	52325491	52325491	G	A	SNP	WDFY2	ENST00000298125	human	ensembl	69_37n	1	known	silent	c.771	p.L257	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY2	HGNC	ENSG00000139668	407	1	0.24	313	64	16.98	-	-	-	A	52325491	G	A	52325491	2	1	577	1	0	0	0	0	0	0	0	1	17366	1281	45	2		2	WDFY2	13	52325491	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2049460	52325491	62844387	181	51737										
TBC1D4	0	genome.wustl.edu	37	chr13	75866384	75866384	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgcaaccttgaatataacttCagttccctgaagaaaaataa	5	8	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	75866384	75866384	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.3340	p.E1114K	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	159	0	0	73	55	42.97	-	-	-	T	75866384	C	T	75866384	3	4	577	1	0	0	0	0	1	0	0	0	15717	835	29	2	568	2	TBC1D4	13	75866384	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	23540893	75866384	39303494	182	51738										
FAM155A	0	genome.wustl.edu	37	chr13	108518787	108518787	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgcagaaccacaagtgatcaGagagcaggactgtgaaaaac	11	9	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	108518787	108518787	G	C	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	missense	c.158	p.S53C	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	68	0	0	50	13	20.63	-	-	-	C	108518787	G	C	108518787	3	2	577	1	0	0	0	0	1	0	0	0	5505	942	33	2	1230	2	FAM155A	13	108518787	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	32652403	108518787	6651091	183	51739										
TNFSF13B	0	genome.wustl.edu	37	chr13	108922524	108922524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgcggagaagctgccagcagGagcaggagcccccaaggccg	16	14	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	13	108922524	108922524	G	A	SNP	TNFSF13B	ENST00000375887	human	ensembl	69_37n	1	known	missense	c.281	p.G94E	0.000	NULL	pfam_TNF,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	-	no_errors	TNFSF13B	HGNC	ENSG00000102524	39	0	0	29	12	28.57	-	-	-	A	108922524	G	A	108922524	3	1	577	1	0	0	0	0	1	0	0	0	16401	1174	41	2	283	2	TNFSF13B	13	108922524	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	403737	108922524	6247354	184	51740										
PARP2	0	genome.wustl.edu	37	chr14	20824784	20824784	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tggttccaggatgagtaactGggtgggaatcttgagccatg	15	6	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	20824784	20824784	G	A	SNP	PARP2	ENST00000250416	human	ensembl	69_37n	1	known	nonsense	c.1304	p.W435*	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484	342	0	0	294	80	21.33	-	-	-	A	20824784	G	A	20824784	4	1	577	1	0	0	0	0	0	1	0	0	11534	1357	47	4	1354	4	PARP2	14	20824784	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		20824784	86524756	185	51741										
RNASE11	0	genome.wustl.edu	37	chr14	21052286	21052286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgcggatgaagttattgctCcacttgcacgatccgtttgc	10	11	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	21052286	21052286	C	G	SNP	RNASE11	ENST00000335950	human	ensembl	69_37n	-1	known	missense	c.348	p.W116C	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE11	HGNC	ENSG00000173464	205	0	0	154	44	22	-	-	-	G	21052286	C	G	21052286	3	3	577	1	0	0	0	0	1	0	0	0	13487	856	30	2	255	2	RNASE11	14	21052286	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	227502	21052286	86297254	186	51742										
PABPN1	0	genome.wustl.edu	37	chr14	23791462	23791462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agctaaaggagctacagaacGaggtagagaagcagatgaat	13	5	0	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	23791462	23791462	G	A	SNP	PABPN1	ENST00000216727	human	ensembl	69_37n	1	known	missense	c.424	p.E142K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PABPN1	HGNC	ENSG00000100836	221	0	0	180	37	16.82	-	-	-	A	23791462	G	A	23791462	3	1	577	1	0	0	0	0	1	0	0	0	11441	1059	37	1	430	1	PABPN1	14	23791462	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2739176	23791462	83558078	187	51743										
FOXA1	0	genome.wustl.edu	37	chr14	38061461	38061461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atggccatggtgatgagcgaGatgtacgagtagggcggctt	17	6	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	38061461	38061461	G	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.528	p.I176M	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	144	0	0	53	65	55.08	-	-	-	C	38061461	G	C	38061461	3	2	577	1	0	0	0	0	1	0	0	0	6035	932	33	2	894	2	FOXA1	14	38061461	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	14269999	38061461	69288079	188	51744										
KTN1	0	genome.wustl.edu	37	chr14	56138368	56138368	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatacaaatccgtccttgcaGaaacagtaggaaatgatttt	7	7	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	56138368	56138368	G	C	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	missense	c.3433	p.E1145Q	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	288	0	0	297	56	15.86	-	-	-	C	56138368	G	C	56138368	3	2	577	1	0	0	0	0	1	0	0	0	8639	943	33	2	3571	2	KTN1	14	56138368	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	18076907	56138368	51211172	189	51745										
DHRS7	0	genome.wustl.edu	37	chr14	60616218	60616218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttcaaatcattggccatgctGattaacatcagccgcacaca	6	12	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	60616218	60616218	G	A	SNP	DHRS7	ENST00000554101	human	ensembl	69_37n	-1	putative	missense	c.809	p.S270L	0.030	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHRS7	HGNC	ENSG00000100612	189	0	0	175	39	18.06	-	-	-	A	60616218	G	A	60616218	3	1	577	1	0	0	0	0	1	0	0	0	4531	1280	45	2	202	2	DHRS7	14	60616218	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4477850	60616218	46733322	190	51746										
HIF1A	0	genome.wustl.edu	37	chr14	62207737	62207737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttaaaatattgattgcatctCcatctcctacccacatacat	2	12	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	62207737	62207737	C	T	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	missense	c.1996	p.P666S	1.000	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	189	0	0	145	27	15.7	-	-	-	T	62207737	C	T	62207737	3	4	577	1	0	0	0	0	1	0	0	0	7154	855	30	2	1970	2	HIF1A	14	62207737	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1591519	62207737	45141803	191	51747										
ADAM21	0	genome.wustl.edu	37	chr14	70924304	70924304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtctatttccggctactgtCaggctgggccctcccagcat	10	14	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	70924304	70924304	C	G	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	missense	c.88	p.Q30E	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	194	0	0	192	42	17.95	-	-	-	G	70924304	C	G	70924304	3	3	577	1	0	0	0	0	1	0	0	0	243	827	29	2	90	2	ADAM21	14	70924304	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8716567	70924304	36425236	192	51748										
ADAM21	0	genome.wustl.edu	37	chr14	70924844	70924844	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggtggactcatgcatggtttCtggagctagttgttgtggtg	16	5	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	70924844	70924844	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	silent	c.628	p.L210	0.997	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	106	0	0	98	29	22.83	-	-	-	T	70924844	C	T	70924844	2	4	577	1	0	0	0	0	0	0	0	1	243	912	32	2		2	ADAM21	14	70924844	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	540	70924844	36424696	193	51749										
MAP3K9	0	genome.wustl.edu	37	chr14	71267708	71267708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgctttcacagcaacctcatCccctatccagaaagcacgat	5	15	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	71267708	71267708	C	T	SNP	MAP3K9	ENST00000555993	human	ensembl	69_37n	-1	known	missense	c.496	p.D166N	0.884	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	188	0	0	141	38	21.11	-	-	-	T	71267708	C	T	71267708	3	4	577	1	0	0	0	0	1	0	0	0	9328	855	30	2	2908	2	MAP3K9	14	71267708	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	342864	71267708	36081832	194	51750										
RBM25	0	genome.wustl.edu	37	chr14	73570127	73570127	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgagatcgggatcgagagagAgatcgtgaccgggatagaga	17	6	0	5			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	73570127	73570127	A	G	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	silent	c.1095	p.R365	1.000	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	177	0	0	226	59	20.7	-	-	-	G	73570127	A	G	73570127	2	3	577	1	0	0	0	0	0	0	0	1	13208	301	11	5		5	RBM25	14	73570127	Silent	SNP	A	TCGA-BH-A18P-01A-11D-A12B-09	2302419	73570127	33779413	195	51751										
PSEN1	0	genome.wustl.edu	37	chr14	73637628	73637628	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agcaagatgaggaagaagatGaggagctgacattgaaatat	13	3	0	7			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	73637628	73637628	G	A	SNP	PSEN1	ENST00000324501	human	ensembl	69_37n	1	known	missense	c.211	p.E71K	1.000	pfam_Peptidase_A22A,prints_Pept_A22A_PS1	pfam_Peptidase_A22A,smart_Peptidase_A22,prints_Pept_A22A_PS1,prints_Peptidase_A22A	-	no_errors	PSEN1	HGNC	ENSG00000080815	249	0	0	199	33	14.1	-	-	-	A	73637628	G	A	73637628	3	1	577	1	0	0	0	0	1	0	0	0	12730	1291	45	2	217	2	PSEN1	14	73637628	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	67501	73637628	33711912	196	51752										
ACOT1	0	genome.wustl.edu	37	chr14	74010102	74010102	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agagtgagttctatgctaatGaggcctgtaaacgcttgcag	12	7	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	74010102	74010102	G	A	SNP	ACOT1	ENST00000311148	human	ensembl	69_37n	1	known	missense	c.1009	p.E337K	0.239	pfam_BAAT_C,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT1	HGNC	ENSG00000184227	47	0	0	22	4	15.38	-	-	-	A	74010102	G	A	74010102	3	1	577	1	0	0	0	0	1	0	0	0	148	1291	45	2	1019	2	ACOT1	14	74010102	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	372474	74010102	33339438	197	51753										
C14orf166B	0	genome.wustl.edu	37	chr14	77304305	77304305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gttcttctatctggagccttGagctttcaggtgagcacatg	11	9	4	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	77304305	77304305	G	C	SNP	C14orf166B	ENST00000393774	human	ensembl	69_37n	1	known	missense	c.586	p.E196Q	0.954	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	C14orf166B	HGNC	ENSG00000100565	328	0	0	228	58	20.14	-	-	-	C	77304305	G	C	77304305	3	2	577	1	0	0	0	0	1	0	0	0	1769	1291	45	2	604	2	C14orf166B	14	77304305	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3294203	77304305	30045235	198	51754										
CDC42BPB	0	genome.wustl.edu	37	chr14	103442325	103442325	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	caggtcccgctgcacatcctCatctttggttaatgtgttgg	10	11	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	14	103442325	103442325	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.1282	p.E428K	0.988	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	262	0	0	180	47	20.7	-	-	-	T	103442325	C	T	103442325	3	4	577	1	0	0	0	0	1	0	0	0	3102	835	29	2	3965	2	CDC42BPB	14	103442325	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	26138020	103442325	3907215	199	51755										
INO80	0	genome.wustl.edu	37	chr15	41384317	41384317	+	Frame_Shift_Del	DEL	C	C	-													0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttctctgctgagattgagttCttcttcatcatcgtcttcac							TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	41384317	41384317	C	-	DEL	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	frame_shift_del	c.445	p.E149fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	480	0	0	445	53	10.56	-	-	-	-	41384317	C	-	41384317	7	5	577	1	0	1	0	1	0	0	0	0	7800	922	32	0	4353	0	INO80	15	41384317	Frame_Shift_Del	DEL	C	TCGA-BH-A18P-01A-11D-A12B-09		41384317	61147075	200	51756										
RPAP1	0	genome.wustl.edu	37	chr15	41821754	41821754	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttctccctgaagactgaatcGagcctgcatcctctaatggg	9	12	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	41821754	41821754	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	nonsense	c.1072	p.R358*	1.000	pfam_RNA_pol_II_AP1_C	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	125	0	0	112	25	18.12	-	-	-	A	41821754	G	A	41821754	4	1	577	1	0	0	0	0	0	1	0	0	13627	1066	37	1	3177	1	RPAP1	15	41821754	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	437437	41821754	60709638	201	51757										
LCMT2	0	genome.wustl.edu	37	chr15	43621556	43621556	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gcagtgccgcccctcctgctCtccaaatcctcctgcactga	7	19	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	43621556	43621556	C	G	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.1132	p.E378Q	1.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	115	0	0	99	29	22.66	-	-	-	G	43621556	C	G	43621556	3	3	577	1	0	0	0	0	1	0	0	0	8733	922	32	2	932	2	LCMT2	15	43621556	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1799802	43621556	58909836	202	51758			1	89		3	3	625	C		1.794034e-05
LCMT2	0	genome.wustl.edu	37	chr15	43621844	43621844	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttccacccgccggcgttcttCtgcgggaagaaagcagtgat	12	12	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	43621844	43621844	C	T	SNP	LCMT2	ENST00000544735	human	ensembl	69_37n	-1	known	splice_site	c.1-1	e1-1	0.687	-	-	-	no_errors	LCMT2	HGNC	ENSG00000168806	32	0	0	35	10	22.22	-	-	-	T	43621844	C	T	43621844	5	4	577	1	0	0	0	0	0	0	1	0	8733	922	32	2	1220	2	LCMT2	15	43621844	Splice_Site	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	288	43621844	58909548	203	51759			1	89		3	3	625	C		1.794034e-05
LCMT2	0	genome.wustl.edu	37	chr15	43622180	43622180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccccgcggcgcccagggcctCctccactcgctggagctgcc	12	21	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	43622180	43622180	C	T	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.508	p.E170K	0.091	pfam_LCM_MeTrfase	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	16	0	0	11	4	26.67	-	-	-	T	43622180	C	T	43622180	3	4	577	1	0	0	0	0	1	0	0	0	8733	864	30	2	1556	2	LCMT2	15	43622180	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	336	43622180	58909212	204	51760			1	89		3	3	625	C		1.794034e-05
DUOX1	0	genome.wustl.edu	37	chr15	45440507	45440507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccaacaactgcctgtccaagGcccagctggctgaggtggtg	13	13	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	45440507	45440507	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.2680	p.A894T	0.519	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	296	0	0	171	121	41.3	-	-	-	A	45440507	G	A	45440507	3	1	577	1	0	0	0	0	1	0	0	0	4835	1203	42	4	2758	4	DUOX1	15	45440507	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1818327	45440507	57090885	205	51761										
UNC13C	0	genome.wustl.edu	37	chr15	54307326	54307326	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggccaatatgattcttatcaGggagctaattctaatgagct	9	7	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	54307326	54307326	G	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.2226	p.Q742H	0.103	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	75	0	0	49	31	38.75	-	-	-	T	54307326	G	T	54307326	3	4	577	1	0	0	0	0	1	0	0	0	17083	991	35	4	2228	4	UNC13C	15	54307326	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	8866819	54307326	48224066	206	51762										
GLCE	0	genome.wustl.edu	37	chr15	69548380	69548380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agtctgaggaagcattccctCaggaacagcagaaagcaccc	10	12	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	69548380	69548380	C	G	SNP	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	missense	c.235	p.Q79E	1.000	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	258	1	0.39	241	62	20.46	-	-	-	G	69548380	C	G	69548380	3	3	577	1	0	0	0	0	1	0	0	0	6484	827	29	2	237	2	GLCE	15	69548380	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15241054	69548380	32983012	207	51763										
NEO1	0	genome.wustl.edu	37	chr15	73428332	73428332	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtatagctgataatggaaatGagacaattgaagctcaagca	10	5	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	15	73428332	73428332	G	A	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.979	p.E327K	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	454	0	0	293	70	19.28	-	-	-	A	73428332	G	A	73428332	3	1	577	1	0	0	0	0	1	0	0	0	10408	1291	45	2	997	2	NEO1	15	73428332	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3879952	73428332	29103060	208	51764										
DNAJA3	0	genome.wustl.edu	37	chr16	4484516	4484516	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agatcaagaaagcctattatCaggtctgtatggaagtcagg	11	6	4	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	4484516	4484516	C	T	SNP	DNAJA3	ENST00000262375	human	ensembl	69_37n	1	known	nonsense	c.343	p.Q115*	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA3	HGNC	ENSG00000103423	190	0	0	150	45	23.08	-	-	-	T	4484516	C	T	4484516	4	4	577	1	0	0	0	0	0	1	0	0	4648	827	29	2	349	2	DNAJA3	16	4484516	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		4484516	85870237	209	51765										
NAGPA	0	genome.wustl.edu	37	chr16	5075523	5075523	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gccccctggctgctccttctCtgcggccagaggctccccgt	11	19	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	5075523	5075523	C	G	SNP	NAGPA	ENST00000312251	human	ensembl	69_37n	-1	known	missense	c.1504	p.E502Q	0.991	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174	62	0	0	43	7	14	-	-	-	G	5075523	C	G	5075523	3	3	577	1	0	0	0	0	1	0	0	0	10216	922	32	2	47	2	NAGPA	16	5075523	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	591007	5075523	85279230	210	51766										
NTAN1	0	genome.wustl.edu	37	chr16	15135525	15135525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatgtcatcttcttgcctgtCaaattcacctatgatgagaa	6	9	5	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	15135525	15135525	C	G	SNP	NTAN1	ENST00000287706	human	ensembl	69_37n	-1	known	missense	c.442	p.D148H	1.000	NULL	NULL	-	no_errors	NTAN1	HGNC	ENSG00000157045	228	0	0	214	41	15.89	-	-	-	G	15135525	C	G	15135525	3	3	577	1	0	0	0	0	1	0	0	0	10768	826	29	2	510	2	NTAN1	16	15135525	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10060002	15135525	75219228	211	51767										
KIAA0430	0	genome.wustl.edu	37	chr16	15728701	15728701	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggttccacagccattacacaGagggacagcaagaggtgcag	13	10	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	15728701	15728701	G	A	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	silent	c.919	p.L307	0.997	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	722	0	0	581	155	21.06	-	-	-	A	15728701	G	A	15728701	2	1	577	1	0	0	0	0	0	0	0	1	8229	933	33	2		2	KIAA0430	16	15728701	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	593176	15728701	74626052	212	51768										
CACNG3	0	genome.wustl.edu	37	chr16	24372874	24372874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gttacgagccaaatcccactCggagttcctgaagaaatcta	8	11	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	24372874	24372874	C	T	SNP	CACNG3	ENST00000005284	human	ensembl	69_37n	1	known	missense	c.638	p.S213L	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	207	0	0	148	29	16.38	-	-	-	T	24372874	C	T	24372874	3	4	577	1	0	0	0	0	1	0	0	0	2583	893	31	1	652	1	CACNG3	16	24372874	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8644173	24372874	65981879	213	51769										
CCDC101	0	genome.wustl.edu	37	chr16	28602948	28602948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggtcctgtttgaagacacctCctatgcagatggctattccc	9	12	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	28602948	28602948	C	T	SNP	CCDC101	ENST00000317058	human	ensembl	69_37n	1	known	missense	c.803	p.S268F	1.000	pfam_SGF29_tudor-like_dom	pfam_SGF29_tudor-like_dom	-	no_errors	CCDC101	HGNC	ENSG00000176476	260	0	0	153	107	41.15	-	-	-	T	28602948	C	T	28602948	3	4	577	1	0	0	0	0	1	0	0	0	2760	855	30	2	837	2	CCDC101	16	28602948	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4230074	28602948	61751805	214	51770										
SPN	0	genome.wustl.edu	37	chr16	29675524	29675524	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccacggcagctagctctctgGagacctccagaggcacctct	10	16	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	29675524	29675524	G	T	SNP	SPN	ENST00000360121	human	ensembl	69_37n	1	known	nonsense	c.475	p.E159*	0.042	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471	146	0	0	109	23	17.42	-	-	-	T	29675524	G	T	29675524	4	4	577	1	0	0	0	0	0	1	0	0	15164	1175	41	2	477	2	SPN	16	29675524	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1072576	29675524	60679229	215	51771										
ADCY7	0	genome.wustl.edu	37	chr16	50341017	50341017	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tttgcctgcgccagcctgatCttcgtctgcatcctgctcgt	9	15	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	50341017	50341017	C	G	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.1809	p.I603M	0.440	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	109	0	0	31	15	32.61	-	-	-	G	50341017	C	G	50341017	3	3	577	1	0	0	0	0	1	0	0	0	299	903	32	2	1863	2	ADCY7	16	50341017	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	20665493	50341017	40013736	216	51772										
CHD9	0	genome.wustl.edu	37	chr16	53337714	53337714	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tatcgcattgaacttctaagGaaagtacgggaacaggccct	10	9	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	53337714	53337714	G	A	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	silent	c.5796	p.R1932	0.968	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	65	0	0	19	12	38.71	-	-	-	A	53337714	G	A	53337714	2	1	577	1	0	0	0	0	0	0	0	1	3361	1165	41	2		2	CHD9	16	53337714	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2996697	53337714	37017039	217	51773										
CCDC135	0	genome.wustl.edu	37	chr16	57760057	57760057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagcgcgtgtttctggtcgcGgaggagcgcatccagctgcg	17	11	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	57760057	57760057	G	A	SNP	CCDC135	ENST00000562250	human	ensembl	69_37n	1	putative	missense	c.605	p.R202Q	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC135	HGNC	ENSG00000159625	49	0	0	9	13	59.09	-	-	-	A	57760057	G	A	57760057	3	1	577	1	0	0	0	0	1	0	0	0	2794	1103	39	1	1882	1	CCDC135	16	57760057	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4422343	57760057	32594696	218	51774										
CDH1	0	genome.wustl.edu	37	chr16	68772257	68772257	+	Frame_Shift_Del	DEL	A	A	-													0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accctggctttgacgccgagAgctacacgttcacggtgccc							TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	68772257	68772257	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.106	p.S36fs	0.989	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	30	0	0	8	14	63.64	-	-	-	-	68772257	A	-	68772257	7	5	577	1	0	1	0	1	0	0	0	0	3124	304	11	0	112	0	CDH1	16	68772257	Frame_Shift_Del	DEL	A	TCGA-BH-A18P-01A-11D-A12B-09	11012200	68772257	21582496	219	51775										
FANCA	0	genome.wustl.edu	37	chr16	89809343	89809343	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaggcagcctcaggggagagGaaactgggacagagagaacg	18	7	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	16	89809343	89809343	G	A	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	silent	c.3630	p.F1210	0.949	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	258	0	0	90	58	39.19	-	-	-	A	89809343	G	A	89809343	2	1	577	1	0	0	0	0	0	0	0	1	5708	1165	41	2		2	FANCA	16	89809343	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	21037086	89809343	545410	220	51776										
OR1A1	0	genome.wustl.edu	37	chr17	3119721	3119721	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accaattatagcctaaaagaCgcagtgatcactgtaatgta	7	8	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	3119721	3119721	C	T	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	1	known	silent	c.807	p.D269	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	167	0	0	62	61	49.19	-	-	-	T	3119721	C	T	3119721	2	4	577	1	0	0	0	0	0	0	0	1	11022	535	19	1		1	OR1A1	17	3119721	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		3119721	78075489	221	51777										
ZZEF1	0	genome.wustl.edu	37	chr17	3981281	3981281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cttggacggaccagaacaggGagaagagcacagagcccacc	13	12	0	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	3981281	3981281	G	A	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.2885	p.S962F	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	118	0	0	58	27	31.4	-	-	-	A	3981281	G	A	3981281	3	1	577	1	0	0	0	0	1	0	0	0	18346	1174	41	2	6148	2	ZZEF1	17	3981281	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	861560	3981281	77213929	222	51778										
ATAD5	0	genome.wustl.edu	37	chr17	29221881	29221881	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	actattttgaaggaattcatCttgacattccaaaagagact	6	7	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	29221881	29221881	C	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.5485	p.L1829V	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	301	0	0	159	55	25.7	-	-	-	G	29221881	C	G	29221881	3	3	577	1	0	0	0	0	1	0	0	0	1080	913	32	2	5575	2	ATAD5	17	29221881	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	25240600	29221881	51973329	223	51779										
RHOT1	0	genome.wustl.edu	37	chr17	30500868	30500868	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aggttcctccccgggcagaaGaaatcaccattccagctgat	9	13	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	30500868	30500868	G	C	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	missense	c.115	p.E39Q	1.000	pfam_MIRO-like,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_Miro,tigrfam_Small_GTP-bd_dom	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	214	0	0	112	35	23.49	-	-	-	C	30500868	G	C	30500868	3	2	577	1	0	0	0	0	1	0	0	0	13427	943	33	2	125	2	RHOT1	17	30500868	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1278987	30500868	50694342	224	51780										
RHOT1	0	genome.wustl.edu	37	chr17	30551656	30551656	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacgtgacacaagctgacctCaagagctccacgttttggct	9	13	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	30551656	30551656	C	G	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	silent	c.1980	p.L660	1.000	NULL	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	369	1	0.27	221	89	28.62	-	-	-	G	30551656	C	G	30551656	2	3	577	1	0	0	0	0	0	0	0	1	13427	813	29	2		2	RHOT1	17	30551656	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	50788	30551656	50643554	225	51781										
LASP1	0	genome.wustl.edu	37	chr17	37054741	37054741	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agacacgcccgagctccagaGaatcaagaagacccaggacc	10	14	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	37054741	37054741	G	A	SNP	LASP1	ENST00000318008	human	ensembl	69_37n	1	known	missense	c.326	p.R109K	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	LASP1	HGNC	ENSG00000002834	156	0	0	139	31	18.13	-	-	-	A	37054741	G	A	37054741	3	1	577	1	0	0	0	0	1	0	0	0	8691	942	33	2	340	2	LASP1	17	37054741	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	6503085	37054741	44140469	226	51782										
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tccagtggccatcaaagtgtTgagggaaaacacatccccca	9	12	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	290	0	0	110	241	68.66	-	-	-	C	37880220	T	C	37880220	3	2	577	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-BH-A18P-01A-11D-A12B-09	825479	37880220	43314990	227	51783										
WIPF2	0	genome.wustl.edu	37	chr17	38421179	38421179	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtggccagtctctggctcctCctcctccgccttaccgccag	9	19	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	38421179	38421179	C	A	SNP	WIPF2	ENST00000323571	human	ensembl	69_37n	1	known	missense	c.751	p.P251T	1.000	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF2	HGNC	ENSG00000171475	126	0	0	101	14	12.17	-	-	-	A	38421179	C	A	38421179	3	1	577	1	0	0	0	0	1	0	0	0	17465	855	30	2	765	2	WIPF2	17	38421179	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	540959	38421179	42774031	228	51784										
WIPF2	0	genome.wustl.edu	37	chr17	38421273	38421273	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctgccacagagacacaattCtttgcataggaagacaccag	9	11	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	38421273	38421273	C	G	SNP	WIPF2	ENST00000323571	human	ensembl	69_37n	1	known	missense	c.845	p.S282C	1.000	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF2	HGNC	ENSG00000171475	76	0	0	69	10	12.66	-	-	-	G	38421273	C	G	38421273	3	3	577	1	0	0	0	0	1	0	0	0	17465	913	32	2	859	2	WIPF2	17	38421273	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	94	38421273	42773937	229	51785										
RNF43	0	genome.wustl.edu	37	chr17	56435317	56435317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtgggttagagagccgccccGaaggggctgctgagttggat	18	8	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	56435317	56435317	G	A	SNP	RNF43	ENST00000407977	human	ensembl	69_37n	-1	known	missense	c.1820	p.S607L	0.095	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	181	0	0	87	27	23.68	-	-	-	A	56435317	G	A	56435317	3	1	577	1	0	0	0	0	1	0	0	0	13581	1059	37	1	539	1	RNF43	17	56435317	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	18014044	56435317	24759893	230	51786										
RNF157	0	genome.wustl.edu	37	chr17	74154505	74154505	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctgaaccgacggtctctgaGagagctgtgtctccgactcg	13	12	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	74154505	74154505	G	A	SNP	RNF157	ENST00000269391	human	ensembl	69_37n	-1	known	missense	c.1382	p.S461F	0.432	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576	147	0	0	65	26	28.26	-	-	-	A	74154505	G	A	74154505	3	1	577	1	0	0	0	0	1	0	0	0	13540	942	33	2	685	2	RNF157	17	74154505	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	17719188	74154505	7040705	231	51787										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623561	74623561	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tccaggcggtcccactcactCtggttgaagtgtctggagtc	12	12	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	74623561	74623561	C	G	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	missense	c.936	p.Q312H	0.687	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	144	0	0	96	34	26.15	-	-	-	G	74623561	C	G	74623561	3	3	577	1	0	0	0	0	1	0	0	0	15314	912	32	2	894	2	ST6GALNAC1	17	74623561	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	469056	74623561	6571649	232	51788										
NARF	0	genome.wustl.edu	37	chr17	80441612	80441612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtgaaattgctcaaataatgGagcaaggtgacctctcagtg	11	7	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	80441612	80441612	G	A	SNP	NARF	ENST00000309794	human	ensembl	69_37n	1	known	missense	c.790	p.E264K	1.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562	242	0	0	144	46	24.21	-	-	-	A	80441612	G	A	80441612	3	1	577	1	0	0	0	0	1	0	0	0	10239	1175	41	2	962	2	NARF	17	80441612	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	5818051	80441612	753598	233	51789										
WDR45L	0	genome.wustl.edu	37	chr17	80583301	80583301	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggtttcgaagacgtgcaactGatggggattgtgtgtgaatg	16	4	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	17	80583301	80583301	G	A	SNP	WDR45L	ENST00000392325	human	ensembl	69_37n	-1	known	nonsense	c.391	p.Q131*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45L	HGNC	ENSG00000141580	285	0	0	158	50	23.92	-	-	-	A	80583301	G	A	80583301	4	1	577	1	0	0	0	0	0	1	0	0	17395	1299	45	2	667	2	WDR45L	17	80583301	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	141689	80583301	611909	234	51790										
MPPE1	0	genome.wustl.edu	37	chr18	11886744	11886744	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aggggcagacgtgggcagcaGaggcccaggtccacaccggc	17	13	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	11886744	11886744	G	A	SNP	MPPE1	ENST00000588072	human	ensembl	69_37n	-1	known	silent	c.712	p.L238	0.000	NULL	pfam_Metallo_PEstase_dom	-	no_errors	MPPE1	HGNC	ENSG00000154889	20	0	0	17	10	37.04	-	-	-	A	11886744	G	A	11886744	2	1	577	1	0	0	0	0	0	0	0	1	9812	933	33	2		2	MPPE1	18	11886744	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		11886744	66190504	235	51791										
ESCO1	0	genome.wustl.edu	37	chr18	19146114	19146114	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	attaatagcttacctgttatCactgcttttagatgtctggt	7	7	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	19146114	19146114	C	A	SNP	ESCO1	ENST00000269214	human	ensembl	69_37n	-1	known	missense	c.1699	p.D567Y	0.999	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446	507	1	0.2	361	76	17.31	-	-	-	A	19146114	C	A	19146114	3	1	577	1	0	0	0	0	1	0	0	0	5285	826	29	2	851	2	ESCO1	18	19146114	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	7259370	19146114	58931134	236	51792										
FAM59A	0	genome.wustl.edu	37	chr18	29848311	29848311	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aaggcagggcatgacgtactCtgctttgtcacaccagctgc	11	12	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	29848311	29848311	C	T	SNP	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	silent	c.2154	p.Q718	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	151	0	0	130	30	18.75	-	-	-	T	29848311	C	T	29848311	2	4	577	1	0	0	0	0	0	0	0	1	5637	912	32	2		2	FAM59A	18	29848311	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	10702197	29848311	48228937	237	51793										
ME2	0	genome.wustl.edu	37	chr18	48452266	48452266	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aagaagcatatacacttacaGaggtattaataatcacatga	6	6	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	48452266	48452266	G	C	SNP	ME2	ENST00000321341	human	ensembl	69_37n	1	known	missense	c.1312	p.E438Q	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	152	0	0	104	22	17.46	-	-	-	C	48452266	G	C	48452266	3	2	577	1	0	0	0	0	1	0	0	0	9489	943	33	2	1354	2	ME2	18	48452266	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	18603955	48452266	29624982	238	51794										
WDR7	0	genome.wustl.edu	37	chr18	54606599	54606599	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tagttaaaaagaaaggtcttCaagaatgtttcccagccatc	7	8	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	54606599	54606599	C	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	nonsense	c.4039	p.Q1347*	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	129	0	0	117	31	20.95	-	-	-	T	54606599	C	T	54606599	4	4	577	1	0	0	0	0	0	1	0	0	17417	827	29	2	4133	2	WDR7	18	54606599	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	6154333	54606599	23470649	239	51795										
ST8SIA3	0	genome.wustl.edu	37	chr18	55020080	55020080	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aacccagcccagcccgggatGagaaactgcaaaatggcccg	11	14	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	18	55020080	55020080	G	A	SNP	ST8SIA3	ENST00000324000	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511	69	0	0	43	19	30.16	-	-	-	A	55020080	G	A	55020080	3	1	577	1	0	0	0	0	1	0	0	0	15324	1290	45	2	5	2	ST8SIA3	18	55020080	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	413481	55020080	23057168	240	51796										
ATP8B3	0	genome.wustl.edu	37	chr19	1783041	1783041	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaggtgtcactgtgactcttTtgggctcgaagctgcctctt	12	10	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	1783041	1783041	T	C	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.3919	p.K1307E	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	124	0	0	62	56	47.46	-	-	-	C	1783041	T	C	1783041	3	2	577	1	0	0	0	0	1	0	0	0	1200	1850	64	5	17	5	ATP8B3	19	1783041	Missense_Mutation	SNP	T	TCGA-BH-A18P-01A-11D-A12B-09		1783041	57345942	241	51797										
TJP3	0	genome.wustl.edu	37	chr19	3750636	3750636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gcgagtacatgatgcggagtCctccgatgaagacggctatg	14	9	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	3750636	3750636	C	T	SNP	TJP3	ENST00000262968	human	ensembl	69_37n	1	known	missense	c.2813	p.S938F	0.997	NULL	pfam_PDZ,pfam_SH3_2,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	259	0	0	204	43	17.41	-	-	-	T	3750636	C	T	3750636	3	4	577	1	0	0	0	0	1	0	0	0	16026	855	30	2	2891	2	TJP3	19	3750636	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1967595	3750636	55378347	242	51798										
TMIGD2	0	genome.wustl.edu	37	chr19	4292689	4292689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	accatagagacggggtggccGggcctggggctggggcaggg	22	9	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	4292689	4292689	G	A	SNP	TMIGD2	ENST00000301272	human	ensembl	69_37n	-1	known	silent	c.756	p.P252	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	TMIGD2	HGNC	ENSG00000167664	101	0	0	39	30	42.86	-	-	-	A	4292689	G	A	4292689	2	1	577	1	0	0	0	0	0	0	0	1	16326	1103	39	1		1	TMIGD2	19	4292689	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	542053	4292689	54836294	243	51799										
STAP2	0	genome.wustl.edu	37	chr19	4325220	4325220	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gggggaccccaacctggcttGggtccaacgggtggctttgg	17	11	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	4325220	4325220	G	C	SNP	STAP2	ENST00000314714	human	ensembl	69_37n	-1	known	silent	c.1065	p.P355	0.812	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078	112	0	0	88	24	20.87	-	-	-	C	4325220	G	C	4325220	2	2	577	1	0	0	0	0	0	0	0	1	15344	1335	47	4		4	STAP2	19	4325220	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	32531	4325220	54803763	244	51800										
MUC16	0	genome.wustl.edu	37	chr19	9045834	9045834	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtgacagtcctggaaaattCtgggggtccaactgaagtta	12	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	9045834	9045834	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.35797	p.E11933K	0.019	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	314	1	0.32	222	58	20.57	-	-	-	T	9045834	C	T	9045834	3	4	577	1	0	0	0	0	1	0	0	0	10045	922	32	2	8046	2	MUC16	19	9045834	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	4720614	9045834	50083149	245	51801										
MUC16	0	genome.wustl.edu	37	chr19	9075373	9075373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttgtgtggttgagctggtgtCcatgtaagggctgacgtccc	15	8	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	9075373	9075373	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.12073	p.D4025N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	179	0	0	154	41	21.03	-	-	-	T	9075373	C	T	9075373	3	4	577	1	0	0	0	0	1	0	0	0	10045	855	30	2	31778	2	MUC16	19	9075373	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	29539	9075373	50053610	246	51802										
DNM2	0	genome.wustl.edu	37	chr19	10870471	10870471	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cggcctctcattctgcagctCatcttctcaaaaacaggtaa	6	13	5	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	10870471	10870471	C	T	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	silent	c.219	p.L73	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	288	0	0	199	53	20.87	-	-	-	T	10870471	C	T	10870471	2	4	577	1	0	0	0	0	0	0	0	1	4707	813	29	2		2	DNM2	19	10870471	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1795098	10870471	48258512	247	51803										
FARSA	0	genome.wustl.edu	37	chr19	13041152	13041152	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacctcatcctccatgctgtCcacctgccaggataaggagt	8	15	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	13041152	13041152	C	G	SNP	FARSA	ENST00000314606	human	ensembl	69_37n	-1	known	missense	c.388	p.D130H	1.000	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	-	no_errors	FARSA	HGNC	ENSG00000179115	89	0	0	79	17	17.71	-	-	-	G	13041152	C	G	13041152	3	3	577	1	0	0	0	0	1	0	0	0	5725	855	30	2	1178	2	FARSA	19	13041152	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	2170681	13041152	46087831	248	51804										
DNAJB1	0	genome.wustl.edu	37	chr19	14629014	14629014	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctgagcacgtcgtaggcctCagcgatctccttgaacttct	10	13	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	14629014	14629014	C	G	SNP	DNAJB1	ENST00000254322	human	ensembl	69_37n	-1	known	missense	c.148	p.E50Q	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB1	HGNC	ENSG00000132002	21	0	0	20	9	31.03	-	-	-	G	14629014	C	G	14629014	3	3	577	1	0	0	0	0	1	0	0	0	4650	835	29	2	886	2	DNAJB1	19	14629014	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1587862	14629014	44499969	249	51805										
RASAL3	0	genome.wustl.edu	37	chr19	15563564	15563564	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgggtgctcagcgactccacGaggcgggacagcactttctg	14	12	2	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	15563564	15563564	G	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	silent	c.2733	p.L911	0.954	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	32	0	0	18	6	25	-	-	-	T	15563564	G	T	15563564	2	4	577	1	0	0	0	0	0	0	0	1	13148	1045	37	3		3	RASAL3	19	15563564	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	934550	15563564	43565419	250	51806										
ZNF90	0	genome.wustl.edu	37	chr19	20229984	20229984	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgaaaccctacaaatgtgaaGaatgtggcaaagcctttaag	9	8	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	20229984	20229984	G	C	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	missense	c.1621	p.E541Q	0.688	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	66	0	0	52	18	25.71	-	-	-	C	20229984	G	C	20229984	3	2	577	1	0	0	0	0	1	0	0	0	18292	943	33	2	1635	2	ZNF90	19	20229984	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4666420	20229984	38898999	251	51807										
ZNF675	0	genome.wustl.edu	37	chr19	23836556	23836556	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tctttacatttgtagggtttCtcttcggtatgaattttcct	7	7	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	23836556	23836556	C	G	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	missense	c.1179	p.E393D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	189	0	0	143	50	25.91	-	-	-	G	23836556	C	G	23836556	3	3	577	1	0	0	0	0	1	0	0	0	18178	912	32	2	531	2	ZNF675	19	23836556	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	3606572	23836556	35292427	252	51808										
ZNF345	0	genome.wustl.edu	37	chr19	37368413	37368413	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cggcggattcatactggtgaGaaaccttatgaatgcaaagc	11	8	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	37368413	37368413	G	C	SNP	ZNF345	ENST00000420450	human	ensembl	69_37n	1	known	missense	c.681	p.E227D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247	180	0	0	138	54	27.98	-	-	-	C	37368413	G	C	37368413	3	2	577	1	0	0	0	0	1	0	0	0	17955	933	33	2	683	2	ZNF345	19	37368413	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	13531857	37368413	21760570	253	51809										
ZNF585B	0	genome.wustl.edu	37	chr19	37676695	37676695	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gatgaaagctcttccacactCagtgcatacatagggtttct	8	10	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	37676695	37676695	C	G	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.1744	p.E582Q	0.077	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	138	0	0	126	31	19.75	-	-	-	G	37676695	C	G	37676695	3	3	577	1	0	0	0	0	1	0	0	0	18114	835	29	2	569	2	ZNF585B	19	37676695	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	308282	37676695	21452288	254	51810										
C19orf33	0	genome.wustl.edu	37	chr19	38794918	38794918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cgccatggagttcgacctggGagcaggtgagctcctgggga	17	10	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	38794918	38794918	G	A	SNP	C19orf33	ENST00000301246	human	ensembl	69_37n	1	known	missense	c.17	p.G6E	0.000	NULL	NULL	-	no_errors	C19orf33	HGNC	ENSG00000167644	75	0	0	53	16	23.19	-	-	-	A	38794918	G	A	38794918	3	1	577	1	0	0	0	0	1	0	0	0	1937	1174	41	2	19	2	C19orf33	19	38794918	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1118223	38794918	20334065	255	51811										
PSG7	0	genome.wustl.edu	37	chr19	43433598	43433598	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aacagaagatactcacggagGagattcagggtgactgggtc	14	7	2	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	43433598	43433598	G	C	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	silent	c.705	p.L235	0.498	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	215	0	0	234	62	20.95	-	-	-	C	43433598	G	C	43433598	2	2	577	1	0	0	0	0	0	0	0	1	12740	1161	41	2		2	PSG7	19	43433598	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4638680	43433598	15695385	256	51812										
ZNF230	0	genome.wustl.edu	37	chr19	44512960	44512960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aggaggcagtgaccttcaagGatgtggctgtgttcttcact	13	8	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	44512960	44512960	G	A	SNP	ZNF230	ENST00000429154	human	ensembl	69_37n	1	known	missense	c.34	p.D12N	0.769	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882	556	0	0	570	103	15.28	-	-	-	A	44512960	G	A	44512960	3	1	577	1	0	0	0	0	1	0	0	0	17880	1174	41	2	40	2	ZNF230	19	44512960	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1079362	44512960	14616023	257	51813										
PRKD2	0	genome.wustl.edu	37	chr19	47201003	47201003	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cactcaccagcgtgtccttgTtgctgtaatgaaccacccaa	7	14	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	47201003	47201003	T	A	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1226	p.N409I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	51	0	0	34	13	27.66	-	-	-	A	47201003	T	A	47201003	3	1	577	1	0	0	0	0	1	0	0	0	12600	1725	60	5	1454	5	PRKD2	19	47201003	Missense_Mutation	SNP	T	TCGA-BH-A18P-01A-11D-A12B-09	2688043	47201003	11927980	258	51814										
LIG1	0	genome.wustl.edu	37	chr19	48643316	48643316	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggcccaaggtggttgaggctGaggtagaggacagggaggag	21	5	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	48643316	48643316	G	A	SNP	LIG1	ENST00000263274	human	ensembl	69_37n	-1	known	silent	c.999	p.L333	1.000	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold-like,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	78	0	0	58	19	24.68	-	-	-	A	48643316	G	A	48643316	2	1	577	1	0	0	0	0	0	0	0	1	8836	1277	45	2		2	LIG1	19	48643316	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1442313	48643316	10485667	259	51815										
ZNF613	0	genome.wustl.edu	37	chr19	52448430	52448430	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agaaaccctatgtatgcaatGaatgtgggaaaggcttcagc	11	7	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	52448430	52448430	G	A	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	missense	c.1294	p.E432K	0.027	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	148	0	0	147	48	24.49	-	-	-	A	52448430	G	A	52448430	3	1	577	1	0	0	0	0	1	0	0	0	18134	1291	45	2	1308	2	ZNF613	19	52448430	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3805114	52448430	6680553	260	51816										
ZNF415	0	genome.wustl.edu	37	chr19	53612832	53612832	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	acattcataaattttcccttCagcttgaaactgctgcagtt	5	10	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	53612832	53612832	C	T	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	missense	c.610	p.E204K	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	194	0	0	207	43	17.2	-	-	-	T	53612832	C	T	53612832	3	4	577	1	0	0	0	0	1	0	0	0	17988	835	29	2	1205	2	ZNF415	19	53612832	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1164402	53612832	5516151	261	51817										
PRKCG	0	genome.wustl.edu	37	chr19	54407909	54407909	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cctcccttcgatggggaggaCgaggaggagctgtttcaggc	16	10	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	54407909	54407909	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	silent	c.1677	p.D559	0.986	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	104	1	0.95	59	52	46.85	-	-	-	T	54407909	C	T	54407909	2	4	577	1	0	0	0	0	0	0	0	1	12593	535	19	1		1	PRKCG	19	54407909	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	795077	54407909	4721074	262	51818										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325488	55325488	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagcaccacagtcaggccttGatgggatcttctagggagac	13	10	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	55325488	55325488	G	C	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	missense	c.1116	p.L372F	0.019	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	17	0	0	1	9	90	-	-	-	C	55325488	G	C	55325488	3	2	577	1	0	0	0	0	1	0	0	0	8371	1281	45	2	1085	2	KIR2DL4	19	55325488	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	917579	55325488	3803495	263	51819										
PEG3	0	genome.wustl.edu	37	chr19	57325872	57325872	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgaggtgtgagtataggagGacccgtactcatagggctca	14	7	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	57325872	57325872	G	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.3938	p.S1313Y	0.024	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	312	1	0.32	210	68	24.46	-	-	-	T	57325872	G	T	57325872	3	4	577	1	0	0	0	0	1	0	0	0	11793	1174	41	2	832	2	PEG3	19	57325872	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2000384	57325872	1803111	264	51820										
PEG3	0	genome.wustl.edu	37	chr19	57327380	57327380	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctctgatggttgatagcatcGaagctctgaatggtagactc	11	8	2	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	57327380	57327380	G	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	silent	c.2430	p.F810	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	169	0	0	148	35	19.13	-	-	-	A	57327380	G	A	57327380	2	1	577	1	0	0	0	0	0	0	0	1	11793	1049	37	1		1	PEG3	19	57327380	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	1508	57327380	1801603	265	51821										
ZNF135	0	genome.wustl.edu	37	chr19	58578710	58578710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aaccaaattgccccactgatCcagcaccagagaactcacac	5	16	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	58578710	58578710	C	T	SNP	ZNF135	ENST00000391699	human	ensembl	69_37n	1	putative	missense	c.911	p.S304F	0.755	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF135	HGNC	ENSG00000176293	135	0	0	155	44	22.11	-	-	-	T	58578710	C	T	58578710	3	4	577	1	0	0	0	0	1	0	0	0	17821	845	30	2	1061	2	ZNF135	19	58578710	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1251330	58578710	550273	266	51822										
ZNF544	0	genome.wustl.edu	37	chr19	58773061	58773061	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aatcagtgtggaaaatctttCagctgttgtaagctcataca	8	7	4	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	19	58773061	58773061	C	T	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	silent	c.1089	p.F363	0.228	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	151	0	0	89	53	37.32	-	-	-	T	58773061	C	T	58773061	2	4	577	1	0	0	0	0	0	0	0	1	18073	825	29	2		2	ZNF544	19	58773061	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	194351	58773061	355922	267	51823										
ATRN	0	genome.wustl.edu	37	chr20	3541448	3541448	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtatgcagtggttgggcactCtgcacacattgttacactga	11	9	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	3541448	3541448	C	G	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.1343	p.S448C	1.000	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	502	0	0	408	101	19.8	-	-	-	G	3541448	C	G	3541448	3	3	577	1	0	0	0	0	1	0	0	0	1210	913	32	2	1373	2	ATRN	20	3541448	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09		3541448	59484072	268	51824										
PYGB	0	genome.wustl.edu	37	chr20	25229006	25229006	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacacggtgcgcgaccacctCgtgggccgctggatccgcac	13	17	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	25229006	25229006	C	T	SNP	PYGB	ENST00000216962	human	ensembl	69_37n	1	known	silent	c.192	p.L64	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	23	0	0	18	7	28	-	-	-	T	25229006	C	T	25229006	2	4	577	1	0	0	0	0	0	0	0	1	12943	871	31	1		1	PYGB	20	25229006	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	21687558	25229006	37796514	269	51825										
REM1	0	genome.wustl.edu	37	chr20	30064441	30064441	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aaccttcacctgccccagatGattggtcttctgaatccagc	7	14	3	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	30064441	30064441	G	A	SNP	REM1	ENST00000201979	human	ensembl	69_37n	1	known	missense	c.193	p.D65N	0.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320	245	0	0	166	56	25.23	-	-	-	A	30064441	G	A	30064441	3	1	577	1	0	0	0	0	1	0	0	0	13305	1290	45	2	195	2	REM1	20	30064441	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	4835435	30064441	32961079	270	51826										
KIF3B	0	genome.wustl.edu	37	chr20	30898414	30898414	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctttccgctttgggtaatgtCatctctgctctagtggacgg	11	10	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	30898414	30898414	C	T	SNP	KIF3B	ENST00000375712	human	ensembl	69_37n	1	known	silent	c.834	p.V278	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	170	0	0	145	34	18.99	-	-	-	T	30898414	C	T	30898414	2	4	577	1	0	0	0	0	0	0	0	1	8353	813	29	2		2	KIF3B	20	30898414	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	833973	30898414	32127106	271	51827										
RBM12	0	genome.wustl.edu	37	chr20	34241075	34241075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgatccaccaaaattaccagGaaagttaaatggaggcccat	8	9	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	34241075	34241075	G	A	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	missense	c.2170	p.P724S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	15	0	0	7	4	36.36	-	-	-	A	34241075	G	A	34241075	3	1	577	1	0	0	0	0	1	0	0	0	13196	1174	41	2	632	2	RBM12	20	34241075	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3342661	34241075	28784445	272	51828										
RALGAPB	0	genome.wustl.edu	37	chr20	37117154	37117154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtgtgctgcacagctatccaGagagcgttggacgagaggtg	16	8	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	37117154	37117154	G	A	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	398	0	0	313	76	19.54	-	-	-	A	37117154	G	A	37117154	3	1	577	1	0	0	0	0	1	0	0	0	13098	943	33	2	81	2	RALGAPB	20	37117154	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2876079	37117154	25908366	273	51829										
SGK2	0	genome.wustl.edu	37	chr20	42195143	42195143	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcattgctacagaatgaactCtagcccagctgggaccccaa	8	13	2	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	42195143	42195143	C	G	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	missense	c.188	p.S63C	0.954	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	170	0	0	114	32	21.77	-	-	-	G	42195143	C	G	42195143	3	3	577	1	0	0	0	0	1	0	0	0	14297	913	32	2	190	2	SGK2	20	42195143	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	5077989	42195143	20830377	274	51830										
WFDC11	0	genome.wustl.edu	37	chr20	44279195	44279195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gacagtagcaccgtacagaaGaatgtcatgagcatgggtat	12	7	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	44279195	44279195	G	C	SNP	WFDC11	ENST00000324384	human	ensembl	69_37n	-1	known	missense	c.45	p.F15L	0.000	NULL	NULL	-	no_errors	WFDC11	HGNC	ENSG00000180083	608	0	0	470	105	18.26	-	-	-	C	44279195	G	C	44279195	3	2	577	1	0	0	0	0	1	0	0	0	17446	933	33	2	230	2	WFDC11	20	44279195	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2084052	44279195	18746325	275	51831										
CDH22	0	genome.wustl.edu	37	chr20	44828148	44828148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tcacgatggcgcctgtgtccGcatcgatatcgaagatctgg	12	11	2	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	44828148	44828148	G	T	SNP	CDH22	ENST00000372262	human	ensembl	69_37n	-1	known	missense	c.1337	p.A446E	0.980	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	62	0	0	35	21	37.5	-	-	-	T	44828148	G	T	44828148	3	4	577	1	0	0	0	0	1	0	0	0	3136	1087	38	3	1169	3	CDH22	20	44828148	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	548953	44828148	18197372	276	51832										
NTSR1	0	genome.wustl.edu	37	chr20	61340967	61340967	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gtgcaccacccctgggccttCggcgacgccggctgccgcgg	15	18	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	20	61340967	61340967	C	T	SNP	NTSR1	ENST00000370501	human	ensembl	69_37n	1	known	silent	c.408	p.F136	0.982	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_NT_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_NT1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NT_rcpt,prints_P2_purnocptor	-	no_errors	NTSR1	HGNC	ENSG00000101188	32	0	0	23	9	28.12	-	-	-	T	61340967	C	T	61340967	2	4	577	1	0	0	0	0	0	0	0	1	10783	883	31	1		1	NTSR1	20	61340967	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	16512819	61340967	1684553	277	51833										
DYRK1A	0	genome.wustl.edu	37	chr21	38884772	38884772	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgacaatgaggcaaggggctGatagagaagagtcccccatg	14	8	0	5			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	21	38884772	38884772	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.2230	p.D744H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	159	0	0	151	40	20.94	-	-	-	C	38884772	G	C	38884772	3	2	577	1	0	0	0	0	1	0	0	0	4889	1290	45	2	2356	2	DYRK1A	21	38884772	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		38884772	9245123	278	51834										
COL6A2	0	genome.wustl.edu	37	chr21	47549150	47549150	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gagcccccggtcaccttcctCcgcacggaagaggggccgga	14	16	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	21	47549150	47549150	C	G	SNP	COL6A2	ENST00000357838	human	ensembl	69_37n	1	known	silent	c.2502	p.L834	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	21	0	0	22	5	18.52	-	-	-	G	47549150	C	G	47549150	2	3	577	1	0	0	0	0	0	0	0	1	3730	842	30	2		2	COL6A2	21	47549150	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8664378	47549150	580745	279	51835										
MB	0	genome.wustl.edu	37	chr22	36031017	36031017	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctcacgtgattgtgggctgaGaagttccatagcctgccatt	11	10	1	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	22	36031017	36031017	G	A	SNP	MB	ENST00000472240	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	MB	HGNC	ENSG00000198125	245	0	0	135	47	25.82	-	-	-	A	36031017	G	A	36031017	1	1	577	0	1	0	0	0	0	0	0	0	9412	957	33	2		2	MB	22	36031017	RNA	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		36031017	15273549	280	51836										
CSF2RB	0	genome.wustl.edu	37	chr22	37325762	37325762	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccagcagcacctacgtggccCgagtacggacccgcctggcc	12	18	0	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	22	37325762	37325762	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	69_37n	1	known	nonsense	c.631	p.R211*	1.000	pirsf_IL3_rcpt_beta,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368	59	0	0	39	9	18.75	-	-	-	T	37325762	C	T	37325762	4	4	577	1	0	0	0	0	0	1	0	0	3967	644	23	1	649	1	CSF2RB	22	37325762	Nonsense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	1294745	37325762	13978804	281	51837										
MLC1	0	genome.wustl.edu	37	chr22	50512736	50512736	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgatccccccgaggacggcaGagatgcctgcgattacctcg	12	14	0	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	22	50512736	50512736	G	C	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	missense	c.623	p.S208C	0.999	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	81	0	0	80	12	13.04	-	-	-	C	50512736	G	C	50512736	3	2	577	1	0	0	0	0	1	0	0	0	9683	942	33	2	530	2	MLC1	22	50512736	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	13186974	50512736	791830	282	51838										
NCAPH2	0	genome.wustl.edu	37	chr22	50961305	50961305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggagacagagctgagccagcGcatcagggactgggaggaca	17	9	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	22	50961305	50961305	G	A	SNP	NCAPH2	ENST00000299821	human	ensembl	69_37n	1	known	missense	c.1484	p.R495H	0.998	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	37	0	0	43	7	14	-	-	-	A	50961305	G	A	50961305	3	1	577	1	0	0	0	0	1	0	0	0	10282	1087	38	1	1593	1	NCAPH2	22	50961305	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	448569	50961305	343261	283	51839										
SLC25A6	0	genome.wustl.edu	37	chrX	1508405	1508405	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ttgcccgcaaagtacctccaGaactgcgtgtgcttgtccac	9	14	0	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	1508405	1508405	G	A	SNP	SLC25A6	ENST00000381401	human	ensembl	69_37n	-1	known	silent	c.327	p.F109	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100	252	0	0	217	34	13.49	-	-	-	A	1508405	G	A	1508405	2	1	577	1	0	0	0	0	0	0	0	1	14602	933	33	2		2	SLC25A6	23	1508405	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09		1508405	153762155	284	51840										
OFD1	0	genome.wustl.edu	37	chrX	13778539	13778539	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	aggctttcagaagttaccatCggagagtcattaaaaactct	8	8	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	13778539	13778539	C	G	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.1960	p.R654G	0.118	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	136	0	0	95	26	21.49	-	-	-	G	13778539	C	G	13778539	3	3	577	1	0	0	0	0	1	0	0	0	10911	875	31	3	2022	3	OFD1	23	13778539	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12270134	13778539	141492021	285	51841										
MBTPS2	0	genome.wustl.edu	37	chrX	21900634	21900634	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tggacaatggattctaaactCtttcttggatgccaccctta	7	10	3	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	21900634	21900634	C	G	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	missense	c.1421	p.S474C	1.000	pfam_Peptidase_M50	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	506	1	0.2	375	94	20.04	-	-	-	G	21900634	C	G	21900634	3	3	577	1	0	0	0	0	1	0	0	0	9433	913	32	2	1463	2	MBTPS2	23	21900634	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	8122095	21900634	133369926	286	51842										
CXorf22	0	genome.wustl.edu	37	chrX	35966471	35966471	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	cacggccaattacccatcctCatttttccaactagtggtat	5	13	1	0			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	35966471	35966471	C	G	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	silent	c.558	p.L186	0.000	superfamily_PapD-like	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	438	0	0	348	103	22.84	-	-	-	G	35966471	C	G	35966471	2	3	577	1	0	0	0	0	0	0	0	1	4133	813	29	2		2	CXorf22	23	35966471	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	14065837	35966471	119304089	287	51843										
TSPAN7	0	genome.wustl.edu	37	chrX	38420832	38420832	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agaatggagaccaaacctgtGataacctgtctcaaaaccct	7	11	1	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	38420832	38420832	G	A	SNP	TSPAN7	ENST00000378482	human	ensembl	69_37n	1	known	silent	c.33	p.V11	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298	105	0	0	78	19	19.59	-	-	-	A	38420832	G	A	38420832	2	1	577	1	0	0	0	0	0	0	0	1	16748	1277	45	2		2	TSPAN7	23	38420832	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2454361	38420832	116849728	288	51844										
HUWE1	0	genome.wustl.edu	37	chrX	53644041	53644041	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gaacaaaagactgaagacctCgggcattcaaacagagtgca	10	9	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	53644041	53644041	C	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.1847	p.R616L	1.000	pfam_E3_Ub_ligase_DUF913,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	242	1	0.41	203	47	18.73	-	-	-	A	53644041	C	A	53644041	3	1	577	1	0	0	0	0	1	0	0	0	7515	884	31	3	11533	3	HUWE1	23	53644041	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	15223209	53644041	101626519	289	51845										
YIPF6	0	genome.wustl.edu	37	chrX	67742612	67742612	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgtttttaagatctttttttCagagcctctgtgtgctgggt	10	6	3	2			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	67742612	67742612	C	G	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	1	known	missense	c.445	p.Q149E	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704	560	0	0	489	104	17.54	-	-	-	G	67742612	C	G	67742612	3	3	577	1	0	0	0	0	1	0	0	0	17579	827	29	2	467	2	YIPF6	23	67742612	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	14098571	67742612	87527948	290	51846										
BRWD3	0	genome.wustl.edu	37	chrX	79978166	79978166	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	atgaggatttccatcaacatCcaccaaaaatggaggaggca	9	9	1	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	79978166	79978166	C	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.1771	p.D591H	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	334	0	0	285	65	18.57	-	-	-	G	79978166	C	G	79978166	3	3	577	1	0	0	0	0	1	0	0	0	1534	855	30	2	3737	2	BRWD3	23	79978166	Missense_Mutation	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	12235554	79978166	75292394	291	51847										
GUCY2F	0	genome.wustl.edu	37	chrX	108638635	108638635	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	agcccagcactgcttcatcaGctggagacattctggagggg	13	11	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	108638635	108638635	G	A	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	silent	c.2359	p.L787	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	420	0	0	242	154	38.79	-	-	-	A	108638635	G	A	108638635	2	1	577	1	0	0	0	0	0	0	0	1	6949	962	34	4		4	GUCY2F	23	108638635	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	28660469	108638635	46631925	292	51848										
NKAP	0	genome.wustl.edu	37	chrX	119059227	119059227	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctttctgtaaaccatttctcGaaaactggccagaatcttgt	6	10	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	119059227	119059227	G	A	SNP	NKAP	ENST00000371410	human	ensembl	69_37n	-1	known	nonsense	c.1204	p.R402*	1.000	pfam_DUF926	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	379	0	0	228	164	41.73	-	-	-	A	119059227	G	A	119059227	4	1	577	1	0	0	0	0	0	1	0	0	10511	1066	37	1	47	1	NKAP	23	119059227	Nonsense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	10420592	119059227	36211333	293	51849										
THOC2	0	genome.wustl.edu	37	chrX	122771967	122771967	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ggattagctaaagcttcaatGatacaatctttcatacatta	5	7	3	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	122771967	122771967	G	C	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.1848	p.I616M	1.000	pfam_THO_THOC2_N	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	285	0	0	243	66	21.36	-	-	-	C	122771967	G	C	122771967	3	2	577	1	0	0	0	0	1	0	0	0	15960	1280	45	2	3017	2	THOC2	23	122771967	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	3712740	122771967	32498593	294	51850										
ODZ1	0	genome.wustl.edu	37	chrX	123556288	123556288	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	tgggagacactgatggccctCgctgactctagagtggagtg	15	9	1	4			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	123556288	123556288	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.4305	p.A1435	0.787	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	173	0	0	114	38	25	-	-	-	T	123556288	C	T	123556288	2	4	577	1	0	0	0	0	0	0	0	1	10907	871	31	1		1	ODZ1	23	123556288	Silent	SNP	C	TCGA-BH-A18P-01A-11D-A12B-09	784321	123556288	31714272	295	51851										
GPR112	0	genome.wustl.edu	37	chrX	135427024	135427024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ccaagaattcagttgtatctAcaacttcagcaattaaatct	4	9	4	1			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	135427024	135427024	A	G	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.1159	p.T387A	0.023	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	146	0	0	77	66	46.15	-	-	-	G	135427024	A	G	135427024	3	3	577	1	0	0	0	0	1	0	0	0	6679	391	14	5	1169	5	GPR112	23	135427024	Missense_Mutation	SNP	A	TCGA-BH-A18P-01A-11D-A12B-09	11870736	135427024	19843536	296	51852										
FGF13	0	genome.wustl.edu	37	chrX	137717749	137717749	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	gctgctgacggtatatcattGatgaatatgtcacataataa	8	6	2	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	137717749	137717749	G	A	SNP	FGF13	ENST00000370603	human	ensembl	69_37n	-1	known	missense	c.500	p.S167L	0.974	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	428	0	0	196	158	44.51	-	-	-	A	137717749	G	A	137717749	3	1	577	1	0	0	0	0	1	0	0	0	5888	1294	45	2	275	2	FGF13	23	137717749	Missense_Mutation	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	2290725	137717749	17552811	297	51853										
RPL10	0	genome.wustl.edu	37	chrX	153628919	153628919	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.600671140939597	179	3.88493581778092e-71	4.20632933335902	5.18341968911917	3.62816935953644	0.144150012865132	0.632191536242597	136	ctgcagaacaaggagcatgtGattgaggccctgcgcagggc	15	10	0	3			TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	X	153628919	153628919	G	C	SNP	RPL10	ENST00000344746	human	ensembl	69_37n	1	known	silent	c.444	p.V148	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403	196	1	0.51	162	48	22.86	-	-	-	C	153628919	G	C	153628919	2	2	577	1	0	0	0	0	0	0	0	1	13640	1277	45	2		2	RPL10	23	153628919	Silent	SNP	G	TCGA-BH-A18P-01A-11D-A12B-09	15911170	153628919	1641641	298	51854										
ZBTB40	0	genome.wustl.edu	37	chr1	22835081	22835081	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tggtttcaattctctgatatCagcagttctagaaaagcaga	8	7	4	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	22835081	22835081	C	G	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	nonsense	c.1556	p.S519*	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	186	0	0	76	73	48.99	-	-	-	G	22835081	C	G	22835081	4	3	578	1	0	0	0	0	0	1	0	0	17638	838	29	2	1582	2	ZBTB40	1	22835081	Nonsense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		22835081	226415540	1	51855										
FLG	0	genome.wustl.edu	37	chr1	152283132	152283132	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ccagcttgtccgtgggctgaCactgactgtgtgtctgagtc	13	11	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	152283132	152283132	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.4230	p.V1410	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	297	3	1	317	68	17.66	-	-	-	A	152283132	C	A	152283132	2	1	578	1	0	0	0	0	0	0	0	1	5968	465	17	4		4	FLG	1	152283132	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	129448051	152283132	96967489	2	51856										
F5	0	genome.wustl.edu	37	chr1	169511020	169511020	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gaccagtgtcatttgaggaaTtctgattatggtcaggaagt	12	5	3	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	169511020	169511020	T	C	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3323	p.N1108S	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	321	0	0	348	68	16.27	-	-	-	C	169511020	T	C	169511020	3	2	578	1	0	0	0	0	1	0	0	0	5385	1493	52	5	3418	5	F5	1	169511020	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	17227888	169511020	79739601	3	51857										
NCF2	0	genome.wustl.edu	37	chr1	183543637	183543637	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cttacccagacacactccatCgccttgtcgattttggaatg	7	13	0	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	183543637	183543637	C	G	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	silent	c.486	p.A162	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	386	0	0	501	72	12.5	-	-	-	G	183543637	C	G	183543637	2	3	578	1	0	0	0	0	0	0	0	1	10289	871	31	3		3	NCF2	1	183543637	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	14032617	183543637	65706984	4	51858										
HMCN1	0	genome.wustl.edu	37	chr1	185815169	185815169	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tcttcacagaaattggcccaGtgacaattaccacagatccc	6	13	2	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	185815169	185815169	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.280	p.V94L	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	381	0	0	374	73	16.33	-	-	-	C	185815169	G	C	185815169	3	2	578	1	0	0	0	0	1	0	0	0	7271	1029	36	4	286	4	HMCN1	1	185815169	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	2271532	185815169	63435452	5	51859										
HMCN1	0	genome.wustl.edu	37	chr1	186135346	186135346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atgtgcagcagggaatccctGctcccatagctgccacaatg	10	13	0	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	186135346	186135346	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.15350	p.C5117F	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	142	0	0	104	123	53.25	-	-	-	T	186135346	G	T	186135346	3	4	578	1	0	0	0	0	1	0	0	0	7271	1319	46	4	15744	4	HMCN1	1	186135346	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	320177	186135346	63115275	6	51860										
LRRN2	0	genome.wustl.edu	37	chr1	204587204	204587204	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agcccagctgccaggagaagGacagcgagagccaggatggc	16	11	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	204587204	204587204	G	C	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	silent	c.1917	p.V639	0.777	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	35	0	0	45	12	21.05	-	-	-	C	204587204	G	C	204587204	2	2	578	1	0	0	0	0	0	0	0	1	9101	1161	41	2		2	LRRN2	1	204587204	Silent	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	18451858	204587204	44663417	7	51861										
MIA3	0	genome.wustl.edu	37	chr1	222818914	222818914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agctagttgctacattgcctGatgatgttcagcctgggcct	11	10	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	222818914	222818914	G	C	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.3496	p.D1166H	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	774	1	0.13	462	368	44.28	-	-	-	C	222818914	G	C	222818914	3	2	578	1	0	0	0	0	1	0	0	0	9636	1290	45	2	3522	2	MIA3	1	222818914	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	18231710	222818914	26431707	8	51862										
OBSCN	0	genome.wustl.edu	37	chr1	228559643	228559643	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cccccacccagcagttgcccCatgccctcctggctccttcc	6	23	0	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	1	228559643	228559643	C	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.21164	p.P7055Q	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	49	0	0	53	13	19.7	-	-	-	A	228559643	C	A	228559643	3	1	578	1	0	0	0	0	1	0	0	0	10885	594	21	4	22744	4	OBSCN	1	228559643	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	5740729	228559643	20690978	9	51863										
INPP4A	0	genome.wustl.edu	37	chr2	99189391	99189391	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ttctctggcaagctgctgagGtactggttacagagaggaaa	13	7	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	2	99189391	99189391	G	A	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	splice_site	c.2646+1	e22+1	1.000	-	-	-	no_errors	INPP4A	HGNC	ENSG00000040933	101	0	0	73	27	26.73	-	-	-	A	99189391	G	A	99189391	5	1	578	1	0	0	0	0	0	0	1	0	7806	1275	44	4	2733	4	INPP4A	2	99189391	Splice_Site	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09		99189391	144009982	10	51864										
EDAR	0	genome.wustl.edu	37	chr2	109513664	109513664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tcttctcgaggcaatcaaatGgcagctccgtggggctaaga	12	10	3	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	2	109513664	109513664	G	A	SNP	EDAR	ENST00000376651	human	ensembl	69_37n	-1	known	missense	c.1142	p.P381L	1.000	superfamily_DEATH-like	pfam_Death,superfamily_DEATH-like	-	no_errors	EDAR	HGNC	ENSG00000135960	57	0	0	28	20	41.67	-	-	-	A	109513664	G	A	109513664	3	1	578	1	0	0	0	0	1	0	0	0	4940	1348	47	4	304	4	EDAR	2	109513664	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	10324273	109513664	133685709	11	51865										
ACVR2A	0	genome.wustl.edu	37	chr2	148657335	148657335	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	acttcaaatccagttacaccTaagccaccctattacaacat	2	14	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	2	148657335	148657335	T	G	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	silent	c.396	p.P132	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	312	0	0	124	29	18.95	-	-	-	G	148657335	T	G	148657335	2	3	578	1	0	0	0	0	0	0	0	1	223	1509	53	5		5	ACVR2A	2	148657335	Silent	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	39143671	148657335	94542038	12	51866										
DNAJC10	0	genome.wustl.edu	37	chr2	183608386	183608386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	taatctgtatgtttttcagcCgtctctagcagtatttaaag	7	7	3	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	2	183608386	183608386	C	T	SNP	DNAJC10	ENST00000264065	human	ensembl	69_37n	1	known	missense	c.1253	p.P418L	1.000	superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C	pfam_Thioredoxin_domain,pfam_DnaJ_N,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_N,smart_DnaJ_N,pirsf_DnaJ_homolog_subfam-C,prints_Hsp_DnaJ,prints_Thioredoxin,pfscan_DnaJ_N	-	no_errors	DNAJC10	HGNC	ENSG00000077232	601	0	0	254	142	35.86	-	-	-	T	183608386	C	T	183608386	3	4	578	1	0	0	0	0	1	0	0	0	4664	652	23	1	1299	1	DNAJC10	2	183608386	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	34951051	183608386	59590987	13	51867										
CTNNB1	0	genome.wustl.edu	37	chr3	41266593	41266593	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cgtttggctgaaccatcacaGatgctgaaacatgcagttgt	10	9	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	3	41266593	41266593	G	A	SNP	CTNNB1	ENST00000349496	human	ensembl	69_37n	1	known	silent	c.390	p.Q130	1.000	prints_Beta-catenin	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	CTNNB1	HGNC	ENSG00000168036	219	0	0	92	53	36.55	-	-	-	A	41266593	G	A	41266593	2	1	578	1	0	0	0	0	0	0	0	1	4048	933	33	2		2	CTNNB1	3	41266593	Silent	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09		41266593	156755837	14	51868										
ZBTB20	0	genome.wustl.edu	37	chr3	114069805	114069805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gctgacgcccgagtcgaagcTttcacctttgggctcactct	10	14	3	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	3	114069805	114069805	T	G	SNP	ZBTB20	ENST00000474710	human	ensembl	69_37n	-1	known	missense	c.1120	p.S374R	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	74	0	0	77	42	35.29	-	-	-	G	114069805	T	G	114069805	3	3	578	1	0	0	0	0	1	0	0	0	17625	1609	56	5	1113	5	ZBTB20	3	114069805	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	72803212	114069805	83952625	15	51869										
SI	0	genome.wustl.edu	37	chr3	164727132	164727132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	aatttctctggcccaccactCtgctgtggaagtcctgaaga	9	12	2	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	3	164727132	164727132	C	G	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.4114	p.E1372Q	0.902	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	337	1	0.3	269	66	19.7	-	-	-	G	164727132	C	G	164727132	3	3	578	1	0	0	0	0	1	0	0	0	14386	922	32	2	1425	2	SI	3	164727132	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	50657327	164727132	33295298	16	51870										
SLC2A2	0	genome.wustl.edu	37	chr3	170715731	170715731	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cctaggaatttcatttctacAgcagcttttggcctgtgggc	10	10	2	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	3	170715731	170715731	A	C	SNP	SLC2A2	ENST00000314251	human	ensembl	69_37n	-1	known	silent	c.1536	p.A512	0.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	57	0	0	43	7	14	-	-	-	C	170715731	A	C	170715731	2	2	578	1	0	0	0	0	0	0	0	1	14633	175	7	5		5	SLC2A2	3	170715731	Silent	SNP	A	TCGA-BH-A18Q-01A-12D-A12B-09	5988599	170715731	27306699	17	51871										
TADA2B	0	genome.wustl.edu	37	chr4	7056404	7056404	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gagaactgcagcggtaccggCgaaacgggatcaccaagatg	14	10	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	4	7056404	7056404	C	G	SNP	TADA2B	ENST00000310074	human	ensembl	69_37n	1	known	missense	c.886	p.R296G	1.000	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011	103	0	0	22	67	75.28	-	-	-	G	7056404	C	G	7056404	3	3	578	1	0	0	0	0	1	0	0	0	15603	760	27	3	892	3	TADA2B	4	7056404	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		7056404	184097872	18	51872										
LPHN3	0	genome.wustl.edu	37	chr4	62936563	62936563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggatttatagttcctccaaaCaaagatgggacccctcccga	8	12	0	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	4	62936563	62936563	C	A	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.4524	p.N1508K	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	134	1	0.74	57	22	27.85	-	-	-	A	62936563	C	A	62936563	3	1	578	1	0	0	0	0	1	0	0	0	8983	477	17	4	4437	4	LPHN3	4	62936563	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	55880159	62936563	128217713	19	51873										
COL25A1	0	genome.wustl.edu	37	chr4	109767306	109767307	+	Frame_Shift_Ins	INS	-	-	T													0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	aaacataccggtaatccaggINSaagtccaattcctccttttt							TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	4	109767306	109767307	-	T	INS	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1504_1503	p.P501fs	1.000:0.985	pfam_Collagen	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	310	0	0	105	52	33.12	-	-	-	T	109767307	-	T	109767306	7	5	578	1	0	1	1	0	0	0	0	0	3714	1174	41	0	588	0	COL25A1	4	109767306	Frame_Shift_Ins	INS	-	TCGA-BH-A18Q-01A-12D-A12B-09	46830743	109767306	81386970	20	51874										
HMGCS1	0	genome.wustl.edu	37	chr5	43298903	43298903	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ctatctgtgcagaagcccatCttggcctggcccaagccaat	9	14	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	5	43298903	43298903	C	T	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	silent	c.165	p.K55	1.000	pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	150	0	0	120	18	12.95	-	-	-	T	43298903	C	T	43298903	2	4	578	1	0	0	0	0	0	0	0	1	7283	912	32	2		2	HMGCS1	5	43298903	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		43298903	137616357	21	51875										
SLC38A9	0	genome.wustl.edu	37	chr5	54965418	54965418	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	caaggaatgcttagtatagaTgttcccatcatggtattcca	8	8	1	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	5	54965418	54965418	T	C	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	silent	c.399	p.T133	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	480	0	0	204	85	29.41	-	-	-	C	54965418	T	C	54965418	2	2	578	1	0	0	0	0	0	0	0	1	14700	1451	51	5		5	SLC38A9	5	54965418	Silent	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	11666515	54965418	125949842	22	51876										
SLCO6A1	0	genome.wustl.edu	37	chr5	101834402	101834402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tctggaagtagtctcagataCcggtgttttttcccgggctt	11	9	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	5	101834402	101834402	C	T	SNP	SLCO6A1	ENST00000379807	human	ensembl	69_37n	-1	known	silent	c.147	p.R49	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	129	0	0	104	35	25	-	-	-	T	101834402	C	T	101834402	2	4	578	1	0	0	0	0	0	0	0	1	14821	494	18	4		4	SLCO6A1	5	101834402	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	46868984	101834402	79080858	23	51877										
LMNB1	0	genome.wustl.edu	37	chr5	126146015	126146015	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	caagtgaggctgtataaggaGgagctggagcagacttacca	14	7	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	5	126146015	126146015	G	C	SNP	LMNB1	ENST00000261366	human	ensembl	69_37n	1	known	missense	c.786	p.E262D	0.977	pfam_F	pfam_F,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368	219	0	0	119	105	46.88	-	-	-	C	126146015	G	C	126146015	3	2	578	1	0	0	0	0	1	0	0	0	8905	991	35	4	800	4	LMNB1	5	126146015	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	24311613	126146015	54769245	24	51878										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712321	140712321	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cccaacgattcggacctcacTctgtacctggtggtggcggc	12	14	2	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	5	140712321	140712321	T	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	silent	c.2070	p.T690	0.061	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	120	0	0	106	16	13.01	-	-	-	A	140712321	T	A	140712321	2	1	578	1	0	0	0	0	0	0	0	1	11623	1538	54	5		5	PCDHGA1	5	140712321	Silent	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	14566306	140712321	40202939	25	51879										
KIF13A	0	genome.wustl.edu	37	chr6	17856279	17856279	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	acctgtctgtccatatgcaaAaatacacgcattatacccct	4	13	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	17856279	17856279	A	T	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.295	p.F99I	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	377	0	0	215	91	29.74	-	-	-	T	17856279	A	T	17856279	3	4	578	1	0	0	0	0	1	0	0	0	8326	14	1	5	5287	5	KIF13A	6	17856279	Missense_Mutation	SNP	A	TCGA-BH-A18Q-01A-12D-A12B-09		17856279	153258788	26	51880										
BTN3A3	0	genome.wustl.edu	37	chr6	26448491	26448491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cgcagaccccttcttcaggaGcgcccagccctggatcgcgg	12	17	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	26448491	26448491	G	C	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	missense	c.731	p.S244T	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	83	0	0	92	25	21.19	-	-	-	C	26448491	G	C	26448491	3	2	578	1	0	0	0	0	1	0	0	0	1573	971	34	4	745	4	BTN3A3	6	26448491	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	8592212	26448491	144666576	27	51881										
CFB	0	genome.wustl.edu	37	chr6	31895941	31895941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tgtctaaggcggtctgcaaaCgtgaggctccctgtgggctt	14	10	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	31895941	31895941	C	T	SNP	CFB	ENST00000556679	human	ensembl	69_37n	1	known	missense	c.256	p.P86S	1.000	superfamily_Complement_control_module,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649	18	0	0	22	5	18.52	-	-	-	T	31895941	C	T	31895941	3	4	578	1	0	0	0	0	1	0	0	0	3307	550	19	1		1	CFB	6	31895941	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	5447450	31895941	139219126	28	51882										
DAAM2	0	genome.wustl.edu	37	chr6	39869637	39869637	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggcagcggcagcggaaggtcCtggctgcaggcagctcgctg	18	12	0	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	39869637	39869637	C	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	missense	c.3031	p.L1011M	0.011	smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	51	0	0	41	24	36.92	-	-	-	A	39869637	C	A	39869637	3	1	578	1	0	0	0	0	1	0	0	0	4248	680	24	4	3122	4	DAAM2	6	39869637	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	7973696	39869637	131245430	29	51883										
MCHR2	0	genome.wustl.edu	37	chr6	100368976	100368976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tgagacagatggagaggtaaTaacccacatagaaggccagt	12	7	0	4			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	100368976	100368976	T	C	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	missense	c.863	p.Y288C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	341	0	0	324	73	18.25	-	-	-	C	100368976	T	C	100368976	3	2	578	1	0	0	0	0	1	0	0	0	9454	1406	49	5	163	5	MCHR2	6	100368976	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	60499339	100368976	70746091	30	51884										
COL10A1	0	genome.wustl.edu	37	chr6	116443059	116443059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tggtggtccagaaggacctgGgtgccctcgaggtccagcag	16	11	0	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	116443059	116443059	G	A	SNP	COL10A1	ENST00000243222	human	ensembl	69_37n	-1	known	missense	c.220	p.P74S	0.976	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500	78	0	0	57	42	42.42	-	-	-	A	116443059	G	A	116443059	3	1	578	1	0	0	0	0	1	0	0	0	3696	1232	43	4	1826	4	COL10A1	6	116443059	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	16074083	116443059	54672008	31	51885										
DSE	0	genome.wustl.edu	37	chr6	116720652	116720652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggctgtgcacacgatgctgtCcagccccttggaatacctcc	10	15	0	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	116720652	116720652	C	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.296	p.S99Y	1.000	superfamily_Chondroitin_lyas	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	75	0	0	50	41	44.57	-	-	-	A	116720652	C	A	116720652	3	1	578	1	0	0	0	0	1	0	0	0	4809	855	30	2	241	2	DSE	6	116720652	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	277593	116720652	54394415	32	51886										
SAMD3	0	genome.wustl.edu	37	chr6	130475973	130475973	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atatagaataaagatacctgAtaagggcacttcaagaaagg	9	5	1	4			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	130475973	130475973	A	C	SNP	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	nonsense	c.1020	p.Y340*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	159	0	0	101	55	35.26	-	-	-	C	130475973	A	C	130475973	4	2	578	1	0	0	0	0	0	1	0	0	13906	340	12	5	558	5	SAMD3	6	130475973	Nonsense_Mutation	SNP	A	TCGA-BH-A18Q-01A-12D-A12B-09	13755321	130475973	40639094	33	51887										
AKAP12	0	genome.wustl.edu	37	chr6	151674861	151674861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gagaatctgcaaagtcagaaCttacagaatcttaaaacatc	6	8	3	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	151674861	151674861	C	T	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.5335	p.L1779F	0.008	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	305	0	0	113	136	54.18	-	-	-	T	151674861	C	T	151674861	3	4	578	1	0	0	0	0	1	0	0	0	448	565	20	4	5374	4	AKAP12	6	151674861	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	21198888	151674861	19440206	34	51888										
RGS17	0	genome.wustl.edu	37	chr6	153332893	153332893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ctctaactcgagaatcaagaCtgacctaaaaagaaacaaga	6	9	2	5			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	153332893	153332893	C	G	SNP	RGS17	ENST00000206262	human	ensembl	69_37n	-1	known	missense	c.449	p.S150T	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS17	HGNC	ENSG00000091844	215	0	0	121	30	19.87	-	-	-	G	153332893	C	G	153332893	3	3	578	1	0	0	0	0	1	0	0	0	13383	565	20	4	187	4	RGS17	6	153332893	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	1658032	153332893	17782174	35	51889										
OPRM1	0	genome.wustl.edu	37	chr6	154412258	154412258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	catgctctctggctccaaagAaaaggacaggaatcttcgaa	9	10	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	154412258	154412258	A	G	SNP	OPRM1	ENST00000434900	human	ensembl	69_37n	1	known	missense	c.1094	p.E365G	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	431	0	0	352	201	36.28	-	-	-	G	154412258	A	G	154412258	3	3	578	1	0	0	0	0	1	0	0	0	10960	246	9	5	1159	5	OPRM1	6	154412258	Missense_Mutation	SNP	A	TCGA-BH-A18Q-01A-12D-A12B-09	1079365	154412258	16702809	36	51890										
TULP4	0	genome.wustl.edu	37	chr6	158915879	158915879	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gccaaccaacctcggtgcagGtaaaaatcatgtcctcttct	7	13	3	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	6	158915879	158915879	G	T	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	splice_site	c.1870+1	e11+1	1.000	-	-	-	no_errors	TULP4	HGNC	ENSG00000130338	248	2	0.8	105	124	53.91	-	-	-	T	158915879	G	T	158915879	5	4	578	1	0	0	0	0	0	0	1	0	16873	1275	44	4	1913	4	TULP4	6	158915879	Splice_Site	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	4503621	158915879	12199188	37	51891										
CBX3	0	genome.wustl.edu	37	chr7	26248127	26248127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggtacaaaaagaaaatctttAtctgacagtgaatctgatga	8	5	3	5			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	7	26248127	26248127	A	G	SNP	CBX3	ENST00000409747	human	ensembl	69_37n	1	novel	missense	c.209	p.Y70C	1.000	pfscan_Chromo_domain/shadow	pfam_Chromo_domain,superfamily_Chromodomain-like,pfscan_Chromo_domain/shadow	-	no_errors	CBX3	HGNC	ENSG00000122565	293	0	0	90	49	35.25	-	-	-	G	26248127	A	G	26248127	3	3	578	1	0	0	0	0	1	0	0	0	2744	446	16	5	292	5	CBX3	7	26248127	Missense_Mutation	SNP	A	TCGA-BH-A18Q-01A-12D-A12B-09		26248127	132890536	38	51892										
UBE3C	0	genome.wustl.edu	37	chr7	157016026	157016026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agagttgccttttgtggttcCatttgaggaacgagtaaagg	13	5	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	7	157016026	157016026	C	T	SNP	UBE3C	ENST00000348165	human	ensembl	69_37n	1	known	missense	c.2081	p.P694L	0.998	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	375	0	0	211	77	26.74	-	-	-	T	157016026	C	T	157016026	3	4	578	1	0	0	0	0	1	0	0	0	16978	594	21	4	2143	4	UBE3C	7	157016026	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	130767899	157016026	2122637	39	51893										
PROSC	0	genome.wustl.edu	37	chr8	37632889	37632889	+	Frame_Shift_Del	DEL	G	G	-													0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ttccaccttcagagaccataGccatcgtggagcacataaac							TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	8	37632889	37632889	G	-	DEL	PROSC	ENST00000328195	human	ensembl	69_37n	1	known	frame_shift_del	c.487	p.A163fs	0.003	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	-	no_errors	PROSC	HGNC	ENSG00000147471	284	0	0	213	63	22.58	-	-	-	-	37632889	G	-	37632889	7	5	578	1	0	1	0	1	0	0	0	0	12640	971	34	0	509	0	PROSC	8	37632889	Frame_Shift_Del	DEL	G	TCGA-BH-A18Q-01A-12D-A12B-09		37632889	108731133	40	51894										
ASH2L	0	genome.wustl.edu	37	chr8	37972459	37972459	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tattcttggtaaaggaacacCcagatccaggcagtaaagat	9	8	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	8	37972459	37972459	C	A	SNP	ASH2L	ENST00000343823	human	ensembl	69_37n	1	known	missense	c.718	p.P240T	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691	218	1	0.46	155	18	10.4	-	-	-	A	37972459	C	A	37972459	3	1	578	1	0	0	0	0	1	0	0	0	1046	623	22	4	744	4	ASH2L	8	37972459	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	339570	37972459	108391563	41	51895										
DUPD1	0	genome.wustl.edu	37	chr10	76797815	76797815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tgaccggctgcggcccatgaCgcagtgaaccaggatcttac	12	13	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	10	76797815	76797815	C	T	SNP	DUPD1	ENST00000338487	human	ensembl	69_37n	-1	known	missense	c.442	p.V148I	0.989	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUPD1	HGNC	ENSG00000188716	31	0	0	30	9	23.08	-	-	-	T	76797815	C	T	76797815	3	4	578	1	0	0	0	0	1	0	0	0	4839	536	19	1	224	1	DUPD1	10	76797815	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		76797815	58736932	42	51896										
SLC18A2	0	genome.wustl.edu	37	chr10	119017348	119017348	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atgggcatcgccatgctggaGccagccctgcccatctggat	12	14	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	10	119017348	119017348	G	A	SNP	SLC18A2	ENST00000298472	human	ensembl	69_37n	1	known	silent	c.936	p.E312	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	72	0	0	52	10	16.13	-	-	-	A	119017348	G	A	119017348	2	1	578	1	0	0	0	0	0	0	0	1	14515	962	34	4		4	SLC18A2	10	119017348	Silent	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	42219533	119017348	16517399	43	51897										
MARK2	0	genome.wustl.edu	37	chr11	63665731	63665731	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gcgaagtaagaataatgaagGttttgaatcatcccaacata	8	6	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	11	63665731	63665731	G	C	SNP	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	missense	c.316	p.V106L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	365	0	0	128	76	37.25	-	-	-	C	63665731	G	C	63665731	3	2	578	1	0	0	0	0	1	0	0	0	9384	1261	44	4	330	4	MARK2	11	63665731	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09		63665731	71340785	44	51898										
ALDH3B2	0	genome.wustl.edu	37	chr11	67431876	67431876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cgcacccccacctggctgctGttggagaaggcgtacagggc	14	14	0	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	11	67431876	67431876	G	T	SNP	ALDH3B2	ENST00000349015	human	ensembl	69_37n	-1	known	missense	c.864	p.N288K	0.370	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746	69	0	0	16	56	77.78	-	-	-	T	67431876	G	T	67431876	3	4	578	1	0	0	0	0	1	0	0	0	500	1368	48	4	305	4	ALDH3B2	11	67431876	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	3766145	67431876	67574640	45	51899										
ACER3	0	genome.wustl.edu	37	chr11	76572075	76572075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gccccacgacctccacgctgGactggtgcgaggagaactac	12	15	0	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	11	76572075	76572075	G	T	SNP	ACER3	ENST00000532485	human	ensembl	69_37n	1	known	missense	c.55	p.D19Y	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER3	HGNC	ENSG00000078124	29	0	0	7	18	72	-	-	-	T	76572075	G	T	76572075	3	4	578	1	0	0	0	0	1	0	0	0	140	1174	41	2	57	2	ACER3	11	76572075	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	9140199	76572075	58434441	46	51900										
CD163	0	genome.wustl.edu	37	chr12	7640285	7640285	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gtatcctggaaggagacaggGctttagaaaaagacagctat	12	6	0	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	12	7640285	7640285	G	C	SNP	CD163	ENST00000396620	human	ensembl	69_37n	-1	known	missense	c.1819	p.P607A	0.105	NULL	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163	HGNC	ENSG00000177575	79	0	0	146	22	13.1	-	-	-	C	7640285	G	C	7640285	3	2	578	1	0	0	0	0	1	0	0	0	2996	1218	42	4		4	CD163	12	7640285	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09		7640285	126211610	47	51901										
KCNH3	0	genome.wustl.edu	37	chr12	49951310	49951310	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cagcctctgtgtgtggacacTggggcatcctcctactgcct	11	14	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	12	49951310	49951310	T	G	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	silent	c.2826	p.T942	0.841	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	45	0	0	28	13	31.71	-	-	-	G	49951310	T	G	49951310	2	3	578	1	0	0	0	0	0	0	0	1	8087	1567	55	5		5	KCNH3	12	49951310	Silent	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	42311025	49951310	83900585	48	51902										
GPR84	0	genome.wustl.edu	37	chr12	54756651	54756651	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gaaggggatgtagctcagggCaaagcagaggaacacagcaa	15	7	1	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	12	54756651	54756651	C	G	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.985	p.A329P	0.718	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	213	0	0	90	104	53.61	-	-	-	G	54756651	C	G	54756651	3	3	578	1	0	0	0	0	1	0	0	0	6764	710	25	4	209	4	GPR84	12	54756651	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	4805341	54756651	79095244	49	51903										
ACACB	0	genome.wustl.edu	37	chr12	109617839	109617839	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atcctcgcttgcaggtggaaCatccctgcacagaaatgatt	9	11	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	12	109617839	109617839	C	A	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.1765	p.H589N	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	83	0	0	82	26	24.07	-	-	-	A	109617839	C	A	109617839	3	1	578	1	0	0	0	0	1	0	0	0	107	478	17	4	1803	4	ACACB	12	109617839	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	54861188	109617839	24234056	50	51904										
SPPL3	0	genome.wustl.edu	37	chr12	121248621	121248621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gaatatcttacctgaaactaCcatagactataagaagaatg	6	7	1	4			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	12	121248621	121248621	C	T	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	missense	c.92	p.G31D	1.000	NULL	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	451	1	0.22	77	228	74.75	-	-	-	T	121248621	C	T	121248621	3	4	578	1	0	0	0	0	1	0	0	0	15181	507	18	4	1102	4	SPPL3	12	121248621	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	11630782	121248621	12603274	51	51905										
UGGT2	0	genome.wustl.edu	37	chr13	96536771	96536771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	taagtgaatattatcaaggtCacagttgctgtgcactgttt	9	6	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	13	96536771	96536771	C	G	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.3202	p.D1068H	1.000	pfam_UDP-g_GGtrans	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	218	0	0	42	177	80.82	-	-	-	G	96536771	C	G	96536771	3	3	578	1	0	0	0	0	1	0	0	0	17039	826	29	2	1400	2	UGGT2	13	96536771	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		96536771	18633107	52	51906										
THBS1	0	genome.wustl.edu	37	chr15	39880727	39880727	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tgtggttcatcttcttacagTcaatggaggctggggtcctt	12	8	4	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	15	39880727	39880727	T	A	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	missense	c.1472	p.I491N	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	65	0	0	53	27	33.75	-	-	-	A	39880727	T	A	39880727	3	1	578	1	0	0	0	0	1	0	0	0	15948	1681	58	5	1506	5	THBS1	15	39880727	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09		39880727	62650665	53	51907										
EHD4	0	genome.wustl.edu	37	chr15	42192879	42192879	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agggacttcctgtgcgagggGggcacgaggtgggggggcag	23	7	0	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	15	42192879	42192879	G	A	SNP	EHD4	ENST00000220325	human	ensembl	69_37n	-1	known	silent	c.1590	p.P530	0.886	smart_EPS15_homology,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	21	0	0	8	14	63.64	-	-	-	A	42192879	G	A	42192879	2	1	578	1	0	0	0	0	0	0	0	1	5015	1219	43	4		4	EHD4	15	42192879	Silent	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	2312152	42192879	60338513	54	51908										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1812723	1812723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggagaagaagaagtcgaccaTctggcagttgtaagctgggg	16	6	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	16	1812723	1812723	T	C	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.1715	p.I572T	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	70	0	0	68	46	40.35	-	-	-	C	1812723	T	C	1812723	3	2	578	1	0	0	0	0	1	0	0	0	9357	1435	50	5	1789	5	MAPK8IP3	16	1812723	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09		1812723	88542030	55	51909										
ABCC12	0	genome.wustl.edu	37	chr16	48173212	48173212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	caaaacaaggcagcttcaaaCaaagaatagctatcacttga	6	9	2	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	16	48173212	48173212	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	silent	c.693	p.L231	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	221	0	0	230	60	20.62	-	-	-	T	48173212	C	T	48173212	2	4	578	1	0	0	0	0	0	0	0	1	52	477	17	4		4	ABCC12	16	48173212	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	46360489	48173212	42181541	56	51910										
PMFBP1	0	genome.wustl.edu	37	chr16	72198814	72198814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cttctctgtctctctcccccGcctaggcagccagaaaaaca	6	17	3	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	16	72198814	72198814	G	A	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.14	p.A5V	0.003	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	82	0	0	103	40	27.59	-	-	-	A	72198814	G	A	72198814	3	1	578	1	0	0	0	0	1	0	0	0	12208	1101	38	1	3145	1	PMFBP1	16	72198814	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	24025602	72198814	18155939	57	51911										
ZNF778	0	genome.wustl.edu	37	chr16	89293296	89293296	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ggagagcagttttccgtgttGggtcagtgtggaaaagcctt	15	6	1	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	16	89293296	89293296	G	C	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	missense	c.516	p.L172F	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	207	0	0	128	86	40.19	-	-	-	C	89293296	G	C	89293296	3	2	578	1	0	0	0	0	1	0	0	0	18244	1339	47	4	534	4	ZNF778	16	89293296	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	17094482	89293296	1061457	58	51912										
AIPL1	0	genome.wustl.edu	37	chr17	6337305	6337305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gtaagcaggatctcccagacCtcgagcttgaacatgtttcc	9	12	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	17	6337305	6337305	C	A	SNP	AIPL1	ENST00000381129	human	ensembl	69_37n	-1	known	missense	c.210	p.E70D	1.000	pfam_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	AIPL1	HGNC	ENSG00000129221	79	0	0	54	32	37.21	-	-	-	A	6337305	C	A	6337305	3	1	578	1	0	0	0	0	1	0	0	0	436	680	24	4	964	4	AIPL1	17	6337305	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		6337305	74857905	59	51913										
TP53	0	genome.wustl.edu	37	chr17	7579458	7579459	+	Frame_Shift_Ins	INS	-	-	TGCA													0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gccggtgtaggagctgctggINStgcaggggccacggggggag							TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	17	7579458	7579459	-	TGCA	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.229_228	p.P76fs	0.000:0.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	39	0	0	22	26	54.17	-	-	-	TGCA	7579459	-	TGCA	7579458	7	5	578	1	0	1	1	0	0	0	0	0	16477	1261	44	0	1073	0	TP53	17	7579458	Frame_Shift_Ins	INS	-	TCGA-BH-A18Q-01A-12D-A12B-09	1242153	7579458	73615752	60	51914										
NFE2L1	0	genome.wustl.edu	37	chr17	46136186	46136186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	aggcagttcttcctcttcttCctcctcctcttcctcttctt	3	17	6	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	17	46136186	46136186	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	missense	c.1502	p.S501F	0.774	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	208	0	0	46	117	70.91	-	-	-	T	46136186	C	T	46136186	3	4	578	1	0	0	0	0	1	0	0	0	10439	855	30	2	1520	2	NFE2L1	17	46136186	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	38556728	46136186	35059024	61	51915										
CASKIN2	0	genome.wustl.edu	37	chr17	73502696	73502696	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ctgtggccattcttggcagcCaagtgcaggggcgtggtgta	16	9	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	17	73502696	73502696	C	A	SNP	CASKIN2	ENST00000321617	human	ensembl	69_37n	-1	known	missense	c.585	p.L195F	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain	-	no_errors	CASKIN2	HGNC	ENSG00000177303	67	0	0	60	17	22.08	-	-	-	A	73502696	C	A	73502696	3	1	578	1	0	0	0	0	1	0	0	0	2692	593	21	4	3079	4	CASKIN2	17	73502696	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	27366510	73502696	7692514	62	51916										
DNAH17	0	genome.wustl.edu	37	chr17	76492022	76492022	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tacccagggttcatggtgatGaagataccgacggtgggaat	14	7	1	3			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	17	76492022	76492022	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	silent	c.5796	p.F1932	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	278	0	0	311	76	19.59	-	-	-	A	76492022	G	A	76492022	2	1	578	1	0	0	0	0	0	0	0	1	4637	1281	45	2		2	DNAH17	17	76492022	Silent	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	2989326	76492022	4703188	63	51917										
SPIRE1	0	genome.wustl.edu	37	chr18	12452354	12452354	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agaaggtcccaatgaaaagaTaggaagagtggagtatggtt	14	3	0	4			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	18	12452354	12452354	T	C	SNP	SPIRE1	ENST00000409402	human	ensembl	69_37n	-1	known	missense	c.1912	p.I638V	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE1	HGNC	ENSG00000134278	174	0	0	108	98	47.12	-	-	-	C	12452354	T	C	12452354	3	2	578	1	0	0	0	0	1	0	0	0	15162	1406	49	5	366	5	SPIRE1	18	12452354	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09		12452354	65624894	64	51918										
SOCS6	0	genome.wustl.edu	37	chr18	67992965	67992965	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tccgaactctgctcctggggTtgcaagagtttatgactcag	11	10	2	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	18	67992965	67992965	T	A	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	1	known	missense	c.1061	p.V354D	1.000	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	259	0	0	97	74	43.27	-	-	-	A	67992965	T	A	67992965	3	1	578	1	0	0	0	0	1	0	0	0	15007	1725	60	5	1063	5	SOCS6	18	67992965	Missense_Mutation	SNP	T	TCGA-BH-A18Q-01A-12D-A12B-09	55540611	67992965	10084283	65	51919										
ATP9B	0	genome.wustl.edu	37	chr18	77037109	77037109	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atggatggatgatgatgaaaGatgagaacatccctggcacg	13	6	0	5			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	18	77037109	77037109	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	69_37n	1	known	missense	c.1324	p.D442H	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9B	HGNC	ENSG00000166377	285	0	0	59	130	68.42	-	-	-	C	77037109	G	C	77037109	3	2	578	1	0	0	0	0	1	0	0	0	1203	942	33	2	1374	2	ATP9B	18	77037109	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	9044144	77037109	1040139	66	51920										
EMR2	0	genome.wustl.edu	37	chr19	14883280	14883280	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	cgagaattttccgcatgacaCtttcgacagtgttgcacact	8	11	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	19	14883280	14883280	C	G	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.229	p.V77L	0.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	258	1	0.39	239	65	21.38	-	-	-	G	14883280	C	G	14883280	3	3	578	1	0	0	0	0	1	0	0	0	5142	565	20	4	2310	4	EMR2	19	14883280	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		14883280	44245703	67	51921										
SERTAD3	0	genome.wustl.edu	37	chr19	40947491	40947491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tgtgaggaggctctggtgggGcccgtgcaggctccttttct	16	10	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	19	40947491	40947491	G	A	SNP	SERTAD3	ENST00000322354	human	ensembl	69_37n	-1	known	missense	c.497	p.A166V	0.246	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD3	HGNC	ENSG00000167565	126	0	0	102	22	17.6	-	-	-	A	40947491	G	A	40947491	3	1	578	1	0	0	0	0	1	0	0	0	14210	1203	42	4	97	4	SERTAD3	19	40947491	Missense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	26064211	40947491	18181492	68	51922										
ZFP28	0	genome.wustl.edu	37	chr19	57066120	57066120	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tttgtagtaaagcgttcaccCagaaggctcaccttgcacag	9	11	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	19	57066120	57066120	C	G	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	missense	c.1966	p.Q656E	0.954	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	169	0	0	118	123	51.04	-	-	-	G	57066120	C	G	57066120	3	3	578	1	0	0	0	0	1	0	0	0	17738	595	21	4	1996	4	ZFP28	19	57066120	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	16118629	57066120	2062863	69	51923										
PEG3	0	genome.wustl.edu	37	chr19	57286204	57286204	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tataatgctgaatgagatatGaattccgactgaagactctg	9	6	1	5			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	19	57286204	57286204	G	T	SNP	PEG3	ENST00000221722	human	ensembl	69_37n	-1	known	nonsense	c.1436	p.S479*	0.040	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	PEG3	HGNC	ENSG00000198300	129	0	0	134	75	35.89	-	-	-	T	57286204	G	T	57286204	4	4	578	1	0	0	0	0	0	1	0	0	11793	1294	45	2		2	PEG3	19	57286204	Nonsense_Mutation	SNP	G	TCGA-BH-A18Q-01A-12D-A12B-09	220084	57286204	1842779	70	51924										
PAX1	0	genome.wustl.edu	37	chr20	21687302	21687302	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	atcggggggagcaagccccgCgtcaccactcccaacgtggt	13	15	1	0			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	20	21687302	21687302	C	A	SNP	PAX1	ENST00000398485	human	ensembl	69_37n	1	known	silent	c.513	p.R171	0.131	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813	15	0	0	21	9	30	-	-	-	A	21687302	C	A	21687302	2	1	578	1	0	0	0	0	0	0	0	1	11551	755	27	3		3	PAX1	20	21687302	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		21687302	41338218	71	51925										
CEP250	0	genome.wustl.edu	37	chr20	34054871	34054871	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gtgacattccgacgccacttCctggaaatgaagtcagctac	9	12	1	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	20	34054871	34054871	C	T	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.573	p.F191	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	106	0	0	87	22	20.18	-	-	-	T	34054871	C	T	34054871	2	4	578	1	0	0	0	0	0	0	0	1	3281	854	30	2		2	CEP250	20	34054871	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	12367569	34054871	28970649	72	51926										
PCNT	0	genome.wustl.edu	37	chr21	47841991	47841992	+	Frame_Shift_Ins	INS	-	-	CA													0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	ctctggaaggtttcagccgcINStgccggaagccatgaaggag							TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	21	47841991	47841992	-	CA	INS	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	frame_shift_ins	c.7132_7133	p.L2378fs	0.000:0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	76	0	0	78	16	17.02	-	-	-	CA	47841992	-	CA	47841991	7	5	578	1	0	1	1	0	0	0	0	0	11663	796	28	0	7258	0	PCNT	21	47841991	Frame_Shift_Ins	INS	-	TCGA-BH-A18Q-01A-12D-A12B-09		47841991	287904	73	51927										
PLXNB2	0	genome.wustl.edu	37	chr22	50717396	50717396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	tcacagttgaggaccttcacCgggatggcgtccactccctc	10	15	2	1			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	22	50717396	50717396	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	silent	c.4434	p.P1478	0.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	83	0	0	88	53	36.81	-	-	-	T	50717396	C	T	50717396	2	4	578	1	0	0	0	0	0	0	0	1	12198	639	23	1		1	PLXNB2	22	50717396	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		50717396	587170	74	51928										
MCF2	0	genome.wustl.edu	37	chrX	138689912	138689912	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	gatggaccagaacttctcttCtcctgacaatcaggcaccac	7	14	3	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	X	138689912	138689912	C	T	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	silent	c.1863	p.E621	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	197	0	0	65	32	32.99	-	-	-	T	138689912	C	T	138689912	2	4	578	1	0	0	0	0	0	0	0	1	9449	912	32	2		2	MCF2	23	138689912	Silent	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09		138689912	16580648	75	51929										
FMR1	0	genome.wustl.edu	37	chrX	147026507	147026507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.118421052631579	9	0.356030377341679	1.53253905810948	1.93932411674347	1.21418553396113	1	1	0	agcttcctgcgcagaggagaCggacggcggcgtggaggggg	21	9	0	2			TCGA-BH-A18Q-01A-12D-A12B-09	TCGA-BH-A18Q-11A-34D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4de6680-33c3-4f6f-8696-453470a00bcb	7a579f39-1175-4207-a069-b49b9cd87782	X	147026507	147026507	C	T	SNP	FMR1	ENST00000370471	human	ensembl	69_37n	1	known	missense	c.1319	p.T440M	0.972	NULL	pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	386	0	0	412	90	17.89	-	-	-	T	147026507	C	T	147026507	3	4	578	1	0	0	0	0	1	0	0	0	6006	536	19	1	1648	1	FMR1	23	147026507	Missense_Mutation	SNP	C	TCGA-BH-A18Q-01A-12D-A12B-09	8336595	147026507	8244053	76	51930										
CCDC18	0	genome.wustl.edu	37	chr1	93701816	93701816	+	Frame_Shift_Del	DEL	G	G	-													0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ctttacaaggtgtcaaaactGgaacaagaacttcaaaaaca							TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	1	93701816	93701816	G	-	DEL	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	frame_shift_del	c.2826	p.E943fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	267	0	0	129	38	22.49	-	-	-	-	93701816	G	-	93701816	7	5	579	1	0	1	0	1	0	0	0	0	2820	1335	47	0	2900	0	CCDC18	1	93701816	Frame_Shift_Del	DEL	G	TCGA-BH-A18R-01A-11D-A12B-09		93701816	155548805	1	51931										
POGK	0	genome.wustl.edu	37	chr1	166819372	166819372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	gccactgaatgacagtgtgcGggcccagtactccaactggc	12	13	0	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	1	166819372	166819372	G	C	SNP	POGK	ENST00000367875	human	ensembl	69_37n	1	known	missense	c.1556	p.R519P	0.997	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157	101	0	0	32	37	53.62	-	-	-	C	166819372	G	C	166819372	3	2	579	1	0	0	0	0	1	0	0	0	12259	1116	39	3	1570	3	POGK	1	166819372	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	73117556	166819372	82431249	2	51932										
FMN2	0	genome.wustl.edu	37	chr1	240371328	240371328	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ccaccccctctacccggagcGggcataccccctccgccccc	7	25	1	0			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	1	240371328	240371328	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.3216	p.A1072	0.002	pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	8	0	0	2	4	57.14	-	-	-	A	240371328	G	A	240371328	2	1	579	1	0	0	0	0	0	0	0	1	5996	1103	39	1		1	FMN2	1	240371328	Silent	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	73551956	240371328	8879293	3	51933										
ACOXL	0	genome.wustl.edu	37	chr2	111875316	111875316	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	acccgcgggccgcgtgggctTtctaccctgcaccgctgcag	13	17	1	0			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	2	111875316	111875316	T	A	SNP	ACOXL	ENST00000439055	human	ensembl	69_37n	1	known	missense	c.1666	p.F556I	0.996	superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	43	0	0	28	9	23.08	-	-	-	A	111875316	T	A	111875316	3	1	579	1	0	0	0	0	1	0	0	0	161	1841	64	5	1732	5	ACOXL	2	111875316	Missense_Mutation	SNP	T	TCGA-BH-A18R-01A-11D-A12B-09		111875316	131324057	4	51934										
POLR1B	0	genome.wustl.edu	37	chr2	113317039	113317039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tggggcttcctttgtcccgtGcataccccagacggggagcc	13	14	0	1			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	2	113317039	113317039	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	silent	c.1614	p.V538	1.000	pfam_RNA_pol_Rpb2_3	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	144	0	0	70	42	37.5	-	-	-	A	113317039	G	A	113317039	2	1	579	1	0	0	0	0	0	0	0	1	12284	1306	46	4		4	POLR1B	2	113317039	Silent	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	1441723	113317039	129882334	5	51935										
FAM107A	0	genome.wustl.edu	37	chr3	58552971	58552971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tgccgtctcagcagctcctgCtcaaaggggcactgcagccg	12	15	2	0			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	3	58552971	58552971	C	G	SNP	FAM107A	ENST00000360997	human	ensembl	69_37n	-1	known	missense	c.291	p.E97D	1.000	pfam_DUF1151	pfam_DUF1151	-	no_errors	FAM107A	HGNC	ENSG00000168309	30	0	0	11	6	35.29	-	-	-	G	58552971	C	G	58552971	3	3	579	1	0	0	0	0	1	0	0	0	5429	796	28	4	151	4	FAM107A	3	58552971	Missense_Mutation	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		58552971	139469459	6	51936										
TBL1XR1	0	genome.wustl.edu	37	chr3	176769295	176769296	+	Frame_Shift_Ins	INS	-	-	TA													0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tcttgtctgagctcacttgcINStatagtatgtgctccattct							TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	3	176769295	176769296	-	TA	INS	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	frame_shift_ins	c.424_423	p.A141fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	325	0	0	137	36	20.81	-	-	-	TA	176769296	-	TA	176769295	7	5	579	1	0	1	1	0	0	0	0	0	15735	797	28	0	1168	0	TBL1XR1	3	176769295	Frame_Shift_Ins	INS	-	TCGA-BH-A18R-01A-11D-A12B-09	118216324	176769295	21253135	7	51937										
SLC30A9	0	genome.wustl.edu	37	chr4	42069113	42069113	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	aatgactagtaatggaaagtCgtgatcctagtacaaatgtg	10	5	0	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	4	42069113	42069113	C	G	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	missense	c.1156	p.R386G	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	425	1	0.23	282	94	24.93	-	-	-	G	42069113	C	G	42069113	3	3	579	1	0	0	0	0	1	0	0	0	14651	884	31	3	1210	3	SLC30A9	4	42069113	Missense_Mutation	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		42069113	149085163	8	51938										
PITX2	0	genome.wustl.edu	37	chr4	111539734	111539734	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tagcctgggtacatgtcgtcGtagggctgcatgagcccatt	13	10	0	1			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	4	111539734	111539734	G	C	SNP	PITX2	ENST00000306732	human	ensembl	69_37n	-1	known	nonsense	c.522	p.Y174*	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX2	HGNC	ENSG00000164093	81	0	0	49	15	23.44	-	-	-	C	111539734	G	C	111539734	4	2	579	1	0	0	0	0	0	1	0	0	12029	1140	40	3	456	3	PITX2	4	111539734	Nonsense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	69470621	111539734	79614542	9	51939										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32552137	32552137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	agaaatgacactccctcttaGgctgccacaggaaacgtgct	9	12	1	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	6	32552137	32552137	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.119	p.P40L	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	9	0	0	2	5	71.43	-	-	-	A	32552137	G	A	32552137	3	1	579	1	0	0	0	0	1	0	0	0	7259	1000	35	4	701	4	HLA-DRB1	6	32552137	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09		32552137	138562930	10	51940										
AKAP12	0	genome.wustl.edu	37	chr6	151672994	151672994	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	caggagatggtgatggaacaGgctatcccccctgactcggt	13	11	0	3			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	6	151672994	151672994	G	A	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	silent	c.3468	p.Q1156	0.030	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	120	0	0	97	27	21.77	-	-	-	A	151672994	G	A	151672994	2	1	579	1	0	0	0	0	0	0	0	1	448	991	35	4		4	AKAP12	6	151672994	Silent	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	119120857	151672994	19442073	11	51941										
DGKI	0	genome.wustl.edu	37	chr7	137374734	137374734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ccagatgctggaggcctgccCgggagattgctttcctgcag	14	12	0	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	7	137374734	137374734	C	T	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.416	p.R139Q	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	110	0	0	46	23	33.33	-	-	-	T	137374734	C	T	137374734	3	4	579	1	0	0	0	0	1	0	0	0	4507	652	23	1	2913	1	DGKI	7	137374734	Missense_Mutation	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		137374734	21763929	12	51942										
RECK	0	genome.wustl.edu	37	chr9	36052308	36052308	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	gataaccaaatgtgccgtgaTgtatgtgaacaggtaagatt	11	5	0	3			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	9	36052308	36052308	T	C	SNP	RECK	ENST00000377966	human	ensembl	69_37n	1	known	silent	c.147	p.D49	0.999	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Prot_inh_PMP,smart_Prot_inh_Kazal	-	no_errors	RECK	HGNC	ENSG00000122707	350	0	0	213	77	26.55	-	-	-	C	36052308	T	C	36052308	2	2	579	1	0	0	0	0	0	0	0	1	13283	1461	51	5		5	RECK	9	36052308	Silent	SNP	T	TCGA-BH-A18R-01A-11D-A12B-09		36052308	105161123	13	51943										
SPIN1	0	genome.wustl.edu	37	chr9	91090014	91090014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tgattcacctccagcagaaaGggaaccaggagaagttgtgg	13	8	1	3			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	9	91090014	91090014	G	C	SNP	SPIN1	ENST00000375859	human	ensembl	69_37n	1	known	missense	c.611	p.R204T	1.000	NULL	pfam_Spin_Ssty	-	no_errors	SPIN1	HGNC	ENSG00000106723	114	0	0	45	23	33.82	-	-	-	C	91090014	G	C	91090014	3	2	579	1	0	0	0	0	1	0	0	0	15143	1000	35	4	629	4	SPIN1	9	91090014	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	55037706	91090014	50123417	14	51944										
ST6GALNAC4	0	genome.wustl.edu	37	chr9	130670691	130670691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ctactcagtcctccaggacgGatgggcgaacacgatgggcc	13	13	1	0			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	9	130670691	130670691	G	T	SNP	ST6GALNAC4	ENST00000335791	human	ensembl	69_37n	-1	known	missense	c.889	p.P297T	1.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC4	HGNC	ENSG00000136840	32	0	0	16	6	27.27	-	-	-	T	130670691	G	T	130670691	3	4	579	1	0	0	0	0	1	0	0	0	15317	1174	41	2	23	2	ST6GALNAC4	9	130670691	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09	39580677	130670691	10542740	15	51945										
DNAH10	0	genome.wustl.edu	37	chr12	124349244	124349244	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ttggccaacggggaacgcatCcggctccaagcacactgtgc	12	14	0	0			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	12	124349244	124349244	C	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.6657	p.I2219	0.971	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	339	1	0.29	205	160	43.84	-	-	-	A	124349244	C	A	124349244	2	1	579	1	0	0	0	0	0	0	0	1	4634	845	30	2		2	DNAH10	12	124349244	Silent	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		124349244	9502651	16	51946										
USPL1	0	genome.wustl.edu	37	chr13	31205227	31205227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	atagtagtggtcaacagaatCcaattaggacagctgattcc	9	8	1	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	13	31205227	31205227	C	A	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.484	p.P162T	0.003	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	201	0	0	79	26	24.76	-	-	-	A	31205227	C	A	31205227	3	1	579	1	0	0	0	0	1	0	0	0	17189	855	30	2	494	2	USPL1	13	31205227	Missense_Mutation	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		31205227	83964651	17	51947										
RYR3	0	genome.wustl.edu	37	chr15	34113500	34113500	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	atggagaagcaaaaaaccctCtatcagcaagctcggctgca	9	11	2	1			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	15	34113500	34113500	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.10845	p.L3615	0.046	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	140	0	0	74	18	19.57	-	-	-	T	34113500	C	T	34113500	2	4	579	1	0	0	0	0	0	0	0	1	13856	900	32	2		2	RYR3	15	34113500	Silent	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		34113500	68417892	18	51948										
TOB1	0	genome.wustl.edu	37	chr17	48941080	48941080	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	ccttttcaccaatttggtaaGaaacctcaaatgggtcgatc	7	10	2	1			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	17	48941080	48941080	G	T	SNP	TOB1	ENST00000268957	human	ensembl	69_37n	-1	known	missense	c.299	p.S100Y	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB1	HGNC	ENSG00000141232	301	0	0	410	61	12.9	-	-	-	T	48941080	G	T	48941080	3	4	579	1	0	0	0	0	1	0	0	0	16442	942	33	2	742	2	TOB1	17	48941080	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09		48941080	32254130	19	51949										
MUC16	0	genome.wustl.edu	37	chr19	9063011	9063011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	tcagcagtggcaccagtgggCactccagaaaggacagtgct	13	11	1	1			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	19	9063011	9063011	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.24435	p.V8145	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	277	0	0	125	38	23.31	-	-	-	T	9063011	C	T	9063011	2	4	579	1	0	0	0	0	0	0	0	1	10045	697	25	4		4	MUC16	19	9063011	Silent	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09		9063011	50065972	20	51950										
PSG8	0	genome.wustl.edu	37	chr19	43262178	43262178	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	gagattcagggtgaatgggtCactgcggctggcactcactg	15	9	3	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	19	43262178	43262178	C	G	SNP	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	missense	c.685	p.D229H	0.666	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	314	0	0	144	53	26.9	-	-	-	G	43262178	C	G	43262178	3	3	579	1	0	0	0	0	1	0	0	0	12741	826	29	2	628	2	PSG8	19	43262178	Missense_Mutation	SNP	C	TCGA-BH-A18R-01A-11D-A12B-09	34199167	43262178	15866805	21	51951										
BFSP1	0	genome.wustl.edu	37	chr20	17474951	17474951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.770595178800023	1.44099378881988	1.44099378881988	1.44099378881988	1	1	0	cctgatcagccgcaggctttGgaggctcaggtatagatggt	14	9	2	2			TCGA-BH-A18R-01A-11D-A12B-09	TCGA-BH-A18R-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42facac2-81d9-4a9f-b4f6-1de89a7662fc	fd500edc-7b86-44fc-91b1-9d87683a3e79	20	17474951	17474951	G	C	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	missense	c.1766	p.P589R	0.000	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	181	0	0	67	21	23.86	-	-	-	C	17474951	G	C	17474951	3	2	579	1	0	0	0	0	1	0	0	0	1420	1348	47	4	235	4	BFSP1	20	17474951	Missense_Mutation	SNP	G	TCGA-BH-A18R-01A-11D-A12B-09		17474951	45550569	22	51952										
STK40	0	genome.wustl.edu	37	chr1	36807418	36807418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ggaggtcatgggctgtgcgtCgtggcccagccgtcgcaccg	17	13	1	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	1	36807418	36807418	C	T	SNP	STK40	ENST00000373130	human	ensembl	69_37n	-1	known	missense	c.1261	p.D421N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK40	HGNC	ENSG00000196182	32	0	0	7	7	50	-	-	-	T	36807418	C	T	36807418	3	4	580	1	0	0	0	0	1	0	0	0	15398	884	31	1	65	1	STK40	1	36807418	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09		36807418	212443203	1	51953										
SLC35D1	0	genome.wustl.edu	37	chr1	67519643	67519643	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	tctcggagtgtggaggatttCgcgggggcttctcctttaac	14	9	2	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	1	67519643	67519643	C	A	SNP	SLC35D1	ENST00000235345	human	ensembl	69_37n	-1	known	silent	c.54	p.A18	0.999	NULL	pfam_DUF250	-	no_errors	SLC35D1	HGNC	ENSG00000116704	57	0	0	25	22	46.81	-	-	-	A	67519643	C	A	67519643	2	1	580	1	0	0	0	0	0	0	0	1	14670	871	31	3		3	SLC35D1	1	67519643	Silent	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09	30712225	67519643	181730978	2	51954										
HCN3	0	genome.wustl.edu	37	chr1	155252422	155252422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	caccgcgggccatccgcacgCgctacctgcgcacctggttc	11	19	0	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	1	155252422	155252422	C	T	SNP	HCN3	ENST00000368358	human	ensembl	69_37n	1	known	missense	c.499	p.R167C	0.992	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630	91	0	0	84	16	16	-	-	-	T	155252422	C	T	155252422	3	4	580	1	0	0	0	0	1	0	0	0	7049	768	27	1	505	1	HCN3	1	155252422	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09	87732779	155252422	93998199	3	51955										
ARHGEF2	0	genome.wustl.edu	37	chr1	155932874	155932874	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	caggggaacaggccctggacCactcctggctccaagtgtag	13	13	0	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	1	155932874	155932874	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	silent	c.828	p.V276	0.134	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	121	0	0	107	29	21.01	-	-	-	T	155932874	C	T	155932874	2	4	580	1	0	0	0	0	0	0	0	1	905	581	21	4		4	ARHGEF2	1	155932874	Silent	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09	680452	155932874	93317747	4	51956										
C2orf65	0	genome.wustl.edu	37	chr2	74803671	74803671	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	tcctttagggtcatccattcTcaaggagccgtcagctgtgc	10	12	3	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	2	74803671	74803671	T	A	SNP	C2orf65	ENST00000290536	human	ensembl	69_37n	-1	known	nonsense	c.844	p.R282*	0.914	NULL	NULL	-	no_errors	C2orf65	HGNC	ENSG00000159374	255	0	0	166	45	21.33	-	-	-	A	74803671	T	A	74803671	4	1	580	1	0	0	0	0	0	1	0	0	2204	1559	54	5	772	5	C2orf65	2	74803671	Nonsense_Mutation	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09		74803671	168395702	5	51957										
RAF1	0	genome.wustl.edu	37	chr3	12650791	12650791	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	tacttgaagttcttctccaaTcaaagacgcagcatcagtat	6	10	4	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	3	12650791	12650791	T	C	SNP	RAF1	ENST00000442415	human	ensembl	69_37n	-1	known	missense	c.364	p.I122V	1.000	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155	426	0	0	188	112	37.09	-	-	-	C	12650791	T	C	12650791	3	2	580	1	0	0	0	0	1	0	0	0	13085	1435	50	5	1638	5	RAF1	3	12650791	Missense_Mutation	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09		12650791	185371639	6	51958										
GABRG1	0	genome.wustl.edu	37	chr4	46043235	46043235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	cacagaaatattattcattgGaatcagagtggatccaggat	9	6	2	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	4	46043235	46043235	G	T	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.1168	p.P390T	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABBAg1_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	228	0	0	87	53	37.86	-	-	-	T	46043235	G	T	46043235	3	4	580	1	0	0	0	0	1	0	0	0	6220	1174	41	2	233	2	GABRG1	4	46043235	Missense_Mutation	SNP	G	TCGA-BH-A18S-01A-11D-A12B-09		46043235	145111041	7	51959										
KIAA1586	0	genome.wustl.edu	37	chr6	56918226	56918226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	atttaagaatattatagaagAgaatgccaaaatctgtatca	6	4	2	3			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	6	56918226	56918226	A	G	SNP	KIAA1586	ENST00000370733	human	ensembl	69_37n	1	known	missense	c.929	p.E310G	0.998	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116	107	0	0	49	37	43.02	-	-	-	G	56918226	A	G	56918226	3	3	580	1	0	0	0	0	1	0	0	0	8297	304	11	5	943	5	KIAA1586	6	56918226	Missense_Mutation	SNP	A	TCGA-BH-A18S-01A-11D-A12B-09		56918226	114196841	8	51960										
MDN1	0	genome.wustl.edu	37	chr6	90410501	90410501	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	catccactctccccaagggcAgacatctgctccctgatggc	8	17	2	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	6	90410501	90410501	A	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.8502	p.S2834	0.010	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	247	0	0	31	80	72.07	-	-	-	T	90410501	A	T	90410501	2	4	580	1	0	0	0	0	0	0	0	1	9486	175	7	5		5	MDN1	6	90410501	Silent	SNP	A	TCGA-BH-A18S-01A-11D-A12B-09	33492275	90410501	80704566	9	51961										
BACH2	0	genome.wustl.edu	37	chr6	90660902	90660902	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	tgggctgtttccggtccatcTcgacatcccccgctctgtcc	9	17	2	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	6	90660902	90660902	T	G	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.923	p.E308A	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	45	0	0	7	10	58.82	-	-	-	G	90660902	T	G	90660902	3	3	580	1	0	0	0	0	1	0	0	0	1288	1551	54	5	1614	5	BACH2	6	90660902	Missense_Mutation	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09	250401	90660902	80454165	10	51962										
LAMA2	0	genome.wustl.edu	37	chr6	129581882	129581882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ctctgttaaccttgaatccgCtgtctcctatcctactgatg	6	13	2	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	6	129581882	129581882	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.2123	p.A708V	0.942	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	374	0	0	35	117	76.97	-	-	-	T	129581882	C	T	129581882	3	4	580	1	0	0	0	0	1	0	0	0	8660	797	28	4	2181	4	LAMA2	6	129581882	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09	38920980	129581882	41533185	11	51963										
SYNE1	0	genome.wustl.edu	37	chr6	152477160	152477160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ggcacaggcgtcacagtcgtGcagcaggacttcacacaggt	13	12	2	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	6	152477160	152477160	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.23863	p.H7955Y	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	174	0	0	69	9	11.54	-	-	-	A	152477160	G	A	152477160	3	1	580	1	0	0	0	0	1	0	0	0	15537	1319	46	4	2663	4	SYNE1	6	152477160	Missense_Mutation	SNP	G	TCGA-BH-A18S-01A-11D-A12B-09	22895278	152477160	18637907	12	51964										
DAB2IP	0	genome.wustl.edu	37	chr9	124534963	124534964	+	Frame_Shift_Ins	INS	-	-	C													0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	gtcacaaggtcctccggggtINSccagccctcacctgcccgca							TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	9	124534963	124534964	-	C	INS	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	frame_shift_ins	c.2156_2157	p.Q720fs	1.000:1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	29	0	0	4	2	33.33	-	-	-	C	124534964	-	C	124534963	7	5	580	1	0	1	1	0	0	0	0	0	4251	1667	58	0	2118	0	DAB2IP	9	124534963	Frame_Shift_Ins	INS	-	TCGA-BH-A18S-01A-11D-A12B-09		124534963	16678468	13	51965										
CCDC147	0	genome.wustl.edu	37	chr10	106153122	106153122	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	atgaagagaaagttaaagatTatgatccatcaggtagatga	10	3	1	6			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	10	106153122	106153122	T	C	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	silent	c.1563	p.I521	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	155	0	0	69	57	45.24	-	-	-	C	106153122	T	C	106153122	2	2	580	1	0	0	0	0	0	0	0	1	2806	1742	61	5		5	CCDC147	10	106153122	Silent	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09		106153122	29381625	14	51966										
ATF7IP	0	genome.wustl.edu	37	chr12	14650900	14650900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ctctcacccagtttgtatctGgtagcaaatactactttgca	6	11	2	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	12	14650900	14650900	G	A	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	missense	c.3706	p.G1236S	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	113	0	0	74	36	32.43	-	-	-	A	14650900	G	A	14650900	3	1	580	1	0	0	0	0	1	0	0	0	1091	1348	47	4	3760	4	ATF7IP	12	14650900	Missense_Mutation	SNP	G	TCGA-BH-A18S-01A-11D-A12B-09		14650900	119200995	15	51967										
KCNH3	0	genome.wustl.edu	37	chr12	49937716	49937716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	agacattgtgctgaatttccGtaccacattcgtgtccaagt	8	10	0	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	12	49937716	49937716	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	missense	c.842	p.R281H	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	72	0	0	27	20	41.67	-	-	-	A	49937716	G	A	49937716	3	1	580	1	0	0	0	0	1	0	0	0	8087	1145	40	1	864	1	KCNH3	12	49937716	Missense_Mutation	SNP	G	TCGA-BH-A18S-01A-11D-A12B-09	35286816	49937716	83914179	16	51968										
TAOK3	0	genome.wustl.edu	37	chr12	118619257	118619257	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ttggcatgcgtctccacctcCttctgtagcttgaggcggtg	12	12	2	1			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	12	118619257	118619257	C	A	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	missense	c.1485	p.K495N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	200	0	0	75	72	48.98	-	-	-	A	118619257	C	A	118619257	3	1	580	1	0	0	0	0	1	0	0	0	15641	680	24	4	1239	4	TAOK3	12	118619257	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09	68681541	118619257	15232638	17	51969										
FBN1	0	genome.wustl.edu	37	chr15	48788403	48788403	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ttgtcacaaaggagactgttCagtacacattcattaatatc	6	8	3	1			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	15	48788403	48788403	C	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.2313	p.L771	1.000	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	367	1	0.27	117	83	41.5	-	-	-	A	48788403	C	A	48788403	2	1	580	1	0	0	0	0	0	0	0	1	5748	813	29	2		2	FBN1	15	48788403	Silent	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09		48788403	53742989	18	51970										
PLEKHG4	0	genome.wustl.edu	37	chr16	67320712	67320712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	agtttgtggtgcgcactgggCgccacaagtccgtgcgccgc	15	13	0	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	16	67320712	67320712	C	T	SNP	PLEKHG4	ENST00000360461	human	ensembl	69_37n	1	known	missense	c.2815	p.R939C	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155	51	0	0	15	16	51.61	-	-	-	T	67320712	C	T	67320712	3	4	580	1	0	0	0	0	1	0	0	0	12145	768	27	1	2877	1	PLEKHG4	16	67320712	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09		67320712	23034041	19	51971										
GIT1	0	genome.wustl.edu	37	chr17	27909785	27909785	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	ttgtgcacaaatgccagcatCtggtacttggccctgatgaa	10	10	1	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	17	27909785	27909785	C	G	SNP	GIT1	ENST00000394869	human	ensembl	69_37n	-1	known	missense	c.336	p.Q112H	1.000	pfam_ArfGAP,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,pfscan_ArfGAP	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262	110	1	0.89	40	31	43.66	-	-	-	G	27909785	C	G	27909785	3	3	580	1	0	0	0	0	1	0	0	0	6448	912	32	2	2048	2	GIT1	17	27909785	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09		27909785	53285425	20	51972										
CCDC57	0	genome.wustl.edu	37	chr17	80159567	80159567	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	cctctgcccgcctggcctctTcccactccctggcctgggcg	10	21	2	0			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	17	80159567	80159567	T	A	SNP	CCDC57	ENST00000389641	human	ensembl	69_37n	-1	known	missense	c.254	p.E85V	1.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155	42	0	0	22	17	43.59	-	-	-	A	80159567	T	A	80159567	3	1	580	1	0	0	0	0	1	0	0	0	2854	1783	62	5	2557	5	CCDC57	17	80159567	Missense_Mutation	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09	52249782	80159567	1035643	21	51973										
MEX3C	0	genome.wustl.edu	37	chr18	48703491	48703491	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	attgtaatggaaatcattctCttcattgagctctatatagt	6	6	4	1			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	18	48703491	48703491	C	G	SNP	MEX3C	ENST00000406189	human	ensembl	69_37n	-1	known	missense	c.1210	p.E404Q	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	299	0	0	87	81	47.09	-	-	-	G	48703491	C	G	48703491	3	3	580	1	0	0	0	0	1	0	0	0	9582	922	32	2	773	2	MEX3C	18	48703491	Missense_Mutation	SNP	C	TCGA-BH-A18S-01A-11D-A12B-09		48703491	29373757	22	51974										
ZNF407	0	genome.wustl.edu	37	chr18	72346030	72346030	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	caggcacaggtgagaataagTgtttgcactgtgagtttagt	13	5	0	2			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	18	72346030	72346030	T	C	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.3055	p.C1019R	0.993	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	126	0	0	45	36	44.44	-	-	-	C	72346030	T	C	72346030	3	2	580	1	0	0	0	0	1	0	0	0	17983	1696	59	5	3057	5	ZNF407	18	72346030	Missense_Mutation	SNP	T	TCGA-BH-A18S-01A-11D-A12B-09	23642539	72346030	5731218	23	51975										
ARRDC5	0	genome.wustl.edu	37	chr19	4891118	4891118	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.773996984733788	1.43235294117647	7.16176470588235	0	0.4	0.991179622791967	0	tctgacagctggcagatggcAgagtccactgaggcgctggt	15	10	1	4			TCGA-BH-A18S-01A-11D-A12B-09	TCGA-BH-A18S-11A-43D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b	cee84481-1eca-4469-b2be-77830f5a9510	19	4891118	4891118	A	C	SNP	ARRDC5	ENST00000381781	human	ensembl	69_37n	-1	known	silent	c.969	p.S323	0.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784	186	0	0	88	44	33.33	-	-	-	C	4891118	A	C	4891118	2	2	580	1	0	0	0	0	0	0	0	1	990	175	7	5		5	ARRDC5	19	4891118	Silent	SNP	A	TCGA-BH-A18S-01A-11D-A12B-09		4891118	54237865	24	51976										
DVL1	0	genome.wustl.edu	37	chr1	1275510	1275510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gtagatgccgccgtctccacGgtcgttgctctgccccacga	11	16	2	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	1275510	1275510	G	A	SNP	DVL1	ENST00000378888	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_1,prints_Dishevelled	-	no_errors	DVL1	HGNC	ENSG00000107404	100	0	0	149	27	15.34	-	-	-	A	1275510	G	A	1275510	3	1	581	1	0	0	0	0	1	0	0	0	4870	1116	39	1	1227	1	DVL1	1	1275510	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		1275510	247975111	1	51977										
WDR65	0	genome.wustl.edu	37	chr1	43675636	43675636	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	agtcccacacctgcctgctaCgtgccttgttcatcccttca	6	17	2	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	43675636	43675636	C	A	SNP	WDR65	ENST00000528956	human	ensembl	69_37n	1	known	missense	c.1978	p.R660S	0.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710	701	0	0	651	184	22.04	-	-	-	A	43675636	C	A	43675636	3	1	581	1	0	0	0	0	1	0	0	0	17413	536	19	3	2016	3	WDR65	1	43675636	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	42400126	43675636	205574985	2	51978										
C1orf61	0	genome.wustl.edu	37	chr1	156384545	156384545	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccacccgccccaggtgagaaGctaaagggaagagaagaagc	13	11	0	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	156384545	156384545	G	C	SNP	C1orf61	ENST00000368243	human	ensembl	69_37n	-1	known	missense	c.72	p.S24R	0.121	NULL	NULL	-	no_errors	C1orf61	HGNC	ENSG00000125462	53	0	0	87	17	16.35	-	-	-	C	156384545	G	C	156384545	3	2	581	1	0	0	0	0	1	0	0	0	2072	985	34	4	414	4	C1orf61	1	156384545	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	112708909	156384545	92866076	3	51979										
MNDA	0	genome.wustl.edu	37	chr1	158813903	158813903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tcaactccatccaacacttcGtttactccggtacactcttc	3	16	2	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	158813903	158813903	G	A	SNP	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	silent	c.561	p.S187	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	573	1	0.17	764	201	20.81	-	-	-	A	158813903	G	A	158813903	2	1	581	1	0	0	0	0	0	0	0	1	9748	1132	40	1		1	MNDA	1	158813903	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	2429358	158813903	90436718	4	51980										
ACTN2	0	genome.wustl.edu	37	chr1	236924431	236924431	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	acggctgacaccgacactgcCgagcaggtcatcgcctcctt	10	16	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	236924431	236924431	C	G	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.2484	p.A828	0.591	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	134	1	0.74	111	107	49.08	-	-	-	G	236924431	C	G	236924431	2	3	581	1	0	0	0	0	0	0	0	1	205	639	23	3		3	ACTN2	1	236924431	Silent	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	78110528	236924431	12326190	5	51981										
ACTN2	0	genome.wustl.edu	37	chr1	236925789	236925789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cctggcggaggagctgcgtcGggagctgcccccggatcagg	18	13	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	1	236925789	236925789	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.2555	p.R852Q	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	52	0	0	58	13	18.31	-	-	-	A	236925789	G	A	236925789	3	1	581	1	0	0	0	0	1	0	0	0	205	1116	39	1	2637	1	ACTN2	1	236925789	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	1358	236925789	12324832	6	51982										
APOB	0	genome.wustl.edu	37	chr2	21229507	21229507	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gtggttaagctcacagtactGttatgactaccctccacaaa	7	11	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	2	21229507	21229507	G	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.10233	p.N3411K	0.991	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	284	0	0	210	163	43.7	-	-	-	C	21229507	G	C	21229507	3	2	581	1	0	0	0	0	1	0	0	0	787	1368	48	4	3474	4	APOB	2	21229507	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		21229507	221969866	7	51983										
SPTBN1	0	genome.wustl.edu	37	chr2	54858364	54858364	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cgagaggcctccctgggagaGgccagcaagctgcagcagtt	15	12	0	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	2	54858364	54858364	G	C	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.3180	p.E1060D	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	67	0	0	70	26	26.8	-	-	-	C	54858364	G	C	54858364	3	2	581	1	0	0	0	0	1	0	0	0	15210	991	35	4	3351	4	SPTBN1	2	54858364	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	33628857	54858364	188341009	8	51984										
CCDC88A	0	genome.wustl.edu	37	chr2	55561331	55561331	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	acggacacaagattctttatAtataccaatttctttggata	5	7	2	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	2	55561331	55561331	A	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.2626	p.Y876H	0.702	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	399	0	0	266	152	36.36	-	-	-	G	55561331	A	G	55561331	3	3	581	1	0	0	0	0	1	0	0	0	2890	449	16	5	3061	5	CCDC88A	2	55561331	Missense_Mutation	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	702967	55561331	187638042	9	51985										
CEP68	0	genome.wustl.edu	37	chr2	65298635	65298635	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gaggagttccctcagactctGagccttcccagaacaacaac	8	14	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	2	65298635	65298635	G	C	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	silent	c.405	p.L135	0.000	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	119	0	0	124	24	16.11	-	-	-	C	65298635	G	C	65298635	2	2	581	1	0	0	0	0	0	0	0	1	3287	1277	45	2		2	CEP68	2	65298635	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	9737304	65298635	177900738	10	51986										
TTN	0	genome.wustl.edu	37	chr2	179416608	179416608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	catcccaagttagtgacatgCcatcagaagtcacattgtat	7	10	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	2	179416608	179416608	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.83315	p.G27772D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	296	0	0	196	115	36.98	-	-	-	T	179416608	C	T	179416608	3	4	581	1	0	0	0	0	1	0	0	0	16832	739	26	4	17072	4	TTN	2	179416608	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	114117973	179416608	63782765	11	51987										
GRIP2	0	genome.wustl.edu	37	chr3	14552762	14552762	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cgtcctccatggggcagttgTccaggcggatattgtcaatg	13	10	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	14552762	14552762	T	C	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	186	1	0.53	164	74	30.83	-	-	-	C	14552762	T	C	14552762	1	2	581	0	1	0	0	0	0	0	0	0	6839	1667	58	5		5	GRIP2	3	14552762	RNA	SNP	T	TCGA-BH-A18T-01A-11D-A12B-09		14552762	183469668	12	51988										
CLASP2	0	genome.wustl.edu	37	chr3	33580407	33580407	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ctataaatatcttcagagttCatattttctgtgtcataatc	4	7	5	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	33580407	33580407	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	69_37n	-1	known	missense	c.3453	p.M1151I	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539	253	0	0	66	108	62.07	-	-	-	T	33580407	C	T	33580407	3	4	581	1	0	0	0	0	1	0	0	0	3485	826	29	2	1116	2	CLASP2	3	33580407	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	19027645	33580407	164442023	13	51989										
STAB1	0	genome.wustl.edu	37	chr3	52548172	52548172	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	attgaggctgccactgcctaCaccatctttgtgcccaccaa	7	15	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	52548172	52548172	C	T	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	silent	c.3489	p.Y1163	0.994	pfam_FAS1_domain,superfamily_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	77	0	0	20	46	69.7	-	-	-	T	52548172	C	T	52548172	2	4	581	1	0	0	0	0	0	0	0	1	15328	489	17	4		4	STAB1	3	52548172	Silent	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	18967765	52548172	145474258	14	51990										
DIRC2	0	genome.wustl.edu	37	chr3	122545663	122545663	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccagattaattcatggaggaCagatgttaaatggattggca	11	5	1	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	122545663	122545663	C	G	SNP	DIRC2	ENST00000261038	human	ensembl	69_37n	1	known	missense	c.454	p.Q152E	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463	286	0	0	187	135	41.8	-	-	-	G	122545663	C	G	122545663	3	3	581	1	0	0	0	0	1	0	0	0	4570	479	17	4	464	4	DIRC2	3	122545663	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	69997491	122545663	75476767	15	51991										
RPN1	0	genome.wustl.edu	37	chr3	128341012	128341012	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	acgcccgacacttactctgtCgcacagatcagagccctctg	8	16	3	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	128341012	128341012	C	G	SNP	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	missense	c.1636	p.D546H	1.000	NULL	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	142	0	0	105	81	43.55	-	-	-	G	128341012	C	G	128341012	3	3	581	1	0	0	0	0	1	0	0	0	13693	884	31	3	195	3	RPN1	3	128341012	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	5795349	128341012	69681418	16	51992										
MECOM	0	genome.wustl.edu	37	chr3	169099127	169099127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ttcaaactcagcaggaatggGgatatcatcagggatgtaga	12	6	4	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	3	169099127	169099127	G	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.223	p.P75T	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	319	0	0	238	156	39.49	-	-	-	T	169099127	G	T	169099127	3	4	581	1	0	0	0	0	1	0	0	0	9493	1232	43	4	3570	4	MECOM	3	169099127	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	40758115	169099127	28923303	17	51993										
USO1	0	genome.wustl.edu	37	chr4	76722346	76722346	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tcactacaaaaatatgattcGagagcaggtaagtactaatg	8	6	1	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	4	76722346	76722346	G	C	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.2006	p.R669P	1.000	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	341	1	0.29	183	138	42.99	-	-	-	C	76722346	G	C	76722346	3	2	581	1	0	0	0	0	1	0	0	0	17136	1058	37	3	1886	3	USO1	4	76722346	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		76722346	114431930	18	51994										
AFF1	0	genome.wustl.edu	37	chr4	88035880	88035880	+	Missense_Mutation	SNP	G	G	T													0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gaccagcctgcagggggaaaGggagccagggcttcttccct							TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	4	88035880	88035880	G	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.1895	p.R632M	0.006	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	17	0	0	20	5	20	-	-	-	T	88035880	G	T	88035880	3	4	581	1	0	0	0	0	1	0	0	0	356	1000	35	4	1958	4	AFF1	4	88035880	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	11313534	88035880	103118396	19	51995	426	2								
AFF1	0	genome.wustl.edu	37	chr4	88035881	88035881	+	Missense_Mutation	SNP	G	G	T													0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	accagcctgcagggggaaagGgagccagggcttcttcccta							TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	4	88035881	88035881	G	T	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.1896	p.R632S	0.001	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	17	0	0	20	6	23.08	-	-	-	T	88035881	G	T	88035881	3	4	581	1	0	0	0	0	1	0	0	0	356	1223	43	4	1959	4	AFF1	4	88035881	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	1	88035881	103118395	20	51996	426	2								
CTNND2	0	genome.wustl.edu	37	chr5	11022927	11022927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gaccaacttctcgatgccacCggcatcccgtaaggccttgg	10	15	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	5	11022927	11022927	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.2953	p.G985S	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	218	1	0.46	195	115	37.1	-	-	-	T	11022927	C	T	11022927	3	4	581	1	0	0	0	0	1	0	0	0	4052	652	23	1	748	1	CTNND2	5	11022927	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		11022927	169892333	21	51997										
PDE4D	0	genome.wustl.edu	37	chr5	58273034	58273034	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ttacgatgtcaatgaccattTtccttaaagattgtctttgt	6	7	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	5	58273034	58273034	T	C	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.1691	p.K564R	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	398	0	0	234	35	13.01	-	-	-	C	58273034	T	C	58273034	3	2	581	1	0	0	0	0	1	0	0	0	11715	1841	64	5	754	5	PDE4D	5	58273034	Missense_Mutation	SNP	T	TCGA-BH-A18T-01A-11D-A12B-09	47250107	58273034	122642226	22	51998										
KIF13A	0	genome.wustl.edu	37	chr6	17799628	17799628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gtattgacagaagacaaaatTtgagaggtttaagggcagcc	12	5	0	4			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	6	17799628	17799628	T	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.2659	p.N887D	0.997	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	274	0	0	255	43	14.38	-	-	-	C	17799628	T	C	17799628	3	2	581	1	0	0	0	0	1	0	0	0	8326	1841	64	5	2855	5	KIF13A	6	17799628	Missense_Mutation	SNP	T	TCGA-BH-A18T-01A-11D-A12B-09		17799628	153315439	23	51999										
ENPP4	0	genome.wustl.edu	37	chr6	46111325	46111325	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tagactttctgtacctcgtcCattttctcgacttcagctac	5	13	3	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	6	46111325	46111325	C	A	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.1310	p.P437Q	0.760	NULL	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	306	0	0	236	151	38.82	-	-	-	A	46111325	C	A	46111325	3	1	581	1	0	0	0	0	1	0	0	0	5169	594	21	4	1320	4	ENPP4	6	46111325	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	28311697	46111325	125003742	24	52000										
NOX3	0	genome.wustl.edu	37	chr6	155750089	155750089	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cactccagcgaagatatggcTgggcactgcaccaagatgta	11	11	0	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	6	155750089	155750089	T	A	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.984	p.P328	0.000	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	83	0	0	72	25	25.77	-	-	-	A	155750089	T	A	155750089	2	1	581	1	0	0	0	0	0	0	0	1	10629	1567	55	5		5	NOX3	6	155750089	Silent	SNP	T	TCGA-BH-A18T-01A-11D-A12B-09	109638764	155750089	15364978	25	52001										
ELMO1	0	genome.wustl.edu	37	chr7	36934509	36934509	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ttcatcctctcggactggcgGattttcaggatctcagtgta	10	10	4	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	36934509	36934509	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	silent	c.1551	p.I517	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	490	0	0	366	195	34.76	-	-	-	A	36934509	G	A	36934509	2	1	581	1	0	0	0	0	0	0	0	1	5102	1164	41	2		2	ELMO1	7	36934509	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		36934509	122204154	26	52002										
WBSCR27	0	genome.wustl.edu	37	chr7	73249185	73249185	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tccagctcggaggtagccagCtcccagcggtccacaggcgg	14	15	0	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	73249185	73249185	C	A	SNP	WBSCR27	ENST00000297873	human	ensembl	69_37n	-1	known	missense	c.626	p.S209I	1.000	NULL	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase	-	no_errors	WBSCR27	HGNC	ENSG00000165171	31	0	0	28	20	40.82	-	-	-	A	73249185	C	A	73249185	3	1	581	1	0	0	0	0	1	0	0	0	17363	797	28	4	115	4	WBSCR27	7	73249185	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	36314676	73249185	85889478	27	52003										
PTPN12	0	genome.wustl.edu	37	chr7	77200466	77200466	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gccactggagaaaaagaagaAaatgttaaaaagaacagata	9	4	0	5			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	77200466	77200466	A	C	SNP	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	missense	c.171	p.E57D	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-12,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947	297	0	0	128	144	52.94	-	-	-	C	77200466	A	C	77200466	3	2	581	1	0	0	0	0	1	0	0	0	12862	11	1	5	177	5	PTPN12	7	77200466	Missense_Mutation	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	3951281	77200466	81938197	28	52004										
PCLO	0	genome.wustl.edu	37	chr7	82544073	82544073	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cacggtcatagcctcgagtcCgtgattcttccctcatgtgt	9	13	3	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	82544073	82544073	C	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.13229	p.R4410L	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	223	1	0.45	155	64	29.22	-	-	-	A	82544073	C	A	82544073	3	1	581	1	0	0	0	0	1	0	0	0	11656	652	23	3	2292	3	PCLO	7	82544073	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	5343607	82544073	76594590	29	52005										
PCLO	0	genome.wustl.edu	37	chr7	82545704	82545704	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tgggtttgtggtggtataaaCtggctgaattcagtttgggg	16	3	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	82545704	82545704	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.11598	p.Q3866	0.995	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	867	0	0	796	339	29.84	-	-	-	T	82545704	C	T	82545704	2	4	581	1	0	0	0	0	0	0	0	1	11656	564	20	4		4	PCLO	7	82545704	Silent	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	1631	82545704	76592959	30	52006										
ZAN	0	genome.wustl.edu	37	chr7	100334227	100334227	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tctcccaccggctccaccggGgcccccggggggtaccctaa	12	19	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	100334227	100334227	G	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.228	p.G76	0.001	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	64	0	0	54	23	29.87	-	-	-	T	100334227	G	T	100334227	2	4	581	1	0	0	0	0	0	0	0	1	17610	1219	43	4		4	ZAN	7	100334227	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	17788523	100334227	58804436	31	52007										
LAMB1	0	genome.wustl.edu	37	chr7	107580692	107580692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cagggaagacccccgagtacCctcgcgtgcacttgtcacag	11	15	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	7	107580692	107580692	C	G	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.3503	p.G1168A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	64	0	0	81	29	26.13	-	-	-	G	107580692	C	G	107580692	3	3	581	1	0	0	0	0	1	0	0	0	8664	623	22	4	1897	4	LAMB1	7	107580692	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	7246465	107580692	51557971	32	52008										
FLJ43860	0	genome.wustl.edu	37	chr8	142517235	142517235	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cagctgtatggcctttcagaAcactgcctgtccatggttgg	11	11	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	8	142517235	142517235	A	G	SNP	FLJ43860	ENST00000521053	human	ensembl	69_37n	-1	known	silent	c.15	p.C5	0.000	NULL	NULL	-	no_errors	AC100803.1	Clone_based_vega_gene	ENSG00000226807	88	0	0	181	40	17.94	-	-	-	G	142517235	A	G	142517235	2	3	581	1	0	0	0	0	0	0	0	1	5976	41	2	5		5	FLJ43860	8	142517235	Silent	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09		142517235	3846787	33	52009										
PRDM12	0	genome.wustl.edu	37	chr9	133543691	133543691	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ggcaccagcatcttctacaaGgccattgaggtgtgtgtgtg	13	9	2	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	9	133543691	133543691	G	C	SNP	PRDM12	ENST00000253008	human	ensembl	69_37n	1	known	missense	c.561	p.K187N	1.000	smart_SET_dom,pirsf_Znf_PRDM12,pfscan_SET_dom	pfam_Znf_C2H2,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM12,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM12	HGNC	ENSG00000130711	171	1	0.58	53	70	56.45	-	-	-	C	133543691	G	C	133543691	3	2	581	1	0	0	0	0	1	0	0	0	12534	991	35	4	571	4	PRDM12	9	133543691	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		133543691	7669740	34	52010										
PCDH15	0	genome.wustl.edu	37	chr10	55582115	55582115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tggaaaaaatgtaggaggagGaagaggaagagggatagaag	18	0	0	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	10	55582115	55582115	G	T	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.5371	p.P1791T	0.036	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	273	0	0	437	57	11.52	-	-	-	T	55582115	G	T	55582115	3	4	581	1	0	0	0	0	1	0	0	0	11584	1174	41	2	2106	2	PCDH15	10	55582115	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		55582115	79952632	35	52011										
ANK3	0	genome.wustl.edu	37	chr10	61831032	61831032	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ctcctctgactcctcagaaaCctcgggaattgggctgggtt	11	12	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	10	61831032	61831032	C	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.9607	p.V3203F	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	397	0	0	221	84	27.45	-	-	-	A	61831032	C	A	61831032	3	1	581	1	0	0	0	0	1	0	0	0	622	507	18	4	3867	4	ANK3	10	61831032	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	6248917	61831032	73703715	36	52012										
PDHX	0	genome.wustl.edu	37	chr11	34981989	34981989	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tccgtttaagtccagctgccCgcaatattctggaaaaacac	7	12	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	11	34981989	34981989	C	G	SNP	PDHX	ENST00000227868	human	ensembl	69_37n	1	known	missense	c.565	p.R189G	0.993	pfam_E3-bd,superfamily_E3-bd	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	433	1	0.23	106	194	64.24	-	-	-	G	34981989	C	G	34981989	3	3	581	1	0	0	0	0	1	0	0	0	11740	652	23	3	702	3	PDHX	11	34981989	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		34981989	100024527	37	52013										
OR5M11	0	genome.wustl.edu	37	chr11	56310715	56310715	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	aatgaattctgtgattgcacTgccatttgtgttggacattt	9	6	1	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	11	56310715	56310715	T	G	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	missense	c.19	p.S7R	0.046	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	61	0	0	63	22	25.88	-	-	-	G	56310715	T	G	56310715	3	3	581	1	0	0	0	0	1	0	0	0	11247	1580	55	5	901	5	OR5M11	11	56310715	Missense_Mutation	SNP	T	TCGA-BH-A18T-01A-11D-A12B-09	21328726	56310715	78695801	38	52014										
FADS2	0	genome.wustl.edu	37	chr11	61631214	61631214	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	aacgtggagcagtccttcttCaacgactggttcagtggaca	11	10	3	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	11	61631214	61631214	C	G	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.1113	p.F371L	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	111	0	0	116	50	30.12	-	-	-	G	61631214	C	G	61631214	3	3	581	1	0	0	0	0	1	0	0	0	5406	825	29	2	1151	2	FADS2	11	61631214	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	5320499	61631214	73375302	39	52015										
SIDT2	0	genome.wustl.edu	37	chr11	117062673	117062673	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cacccggacatcaacgccagCgcctacagtgcctacgcctg	9	18	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	11	117062673	117062673	C	A	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.1878	p.S626R	0.381	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	83	0	0	112	58	34.12	-	-	-	A	117062673	C	A	117062673	3	1	581	1	0	0	0	0	1	0	0	0	14392	767	27	3	1889	3	SIDT2	11	117062673	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	55431459	117062673	17943843	40	52016										
ROBO4	0	genome.wustl.edu	37	chr11	124765517	124765517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cccacggagctccctggcctCccggggcagtctgggtcctg	14	17	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	11	124765517	124765517	C	A	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.872	p.G291V	0.132	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	17	0	0	10	6	37.5	-	-	-	A	124765517	C	A	124765517	3	1	581	1	0	0	0	0	1	0	0	0	13602	855	30	2	2203	2	ROBO4	11	124765517	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	7702844	124765517	10240999	41	52017										
CD4	0	genome.wustl.edu	37	chr12	6924071	6924071	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	agaccctctccgtgtctcagCtggagctccaggatagtggc	12	13	2	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	6924071	6924071	C	G	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	missense	c.520	p.L174V	0.000	pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	132	0	0	351	194	35.53	-	-	-	G	6924071	C	G	6924071	3	3	581	1	0	0	0	0	1	0	0	0	3043	796	28	4	534	4	CD4	12	6924071	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		6924071	126927824	42	52018										
CD4	0	genome.wustl.edu	37	chr12	6925370	6925370	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tcctcctccaagtcttggatCacctttgacctgaagaacaa	6	13	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	6925370	6925370	C	T	SNP	CD4	ENST00000011653	human	ensembl	69_37n	1	known	silent	c.756	p.I252	0.001	pfam_CD4-extracel,smart_Ig_sub,prints_Ag_CD4	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610	89	0	0	279	138	33.09	-	-	-	T	6925370	C	T	6925370	2	4	581	1	0	0	0	0	0	0	0	1	3043	816	29	2		2	CD4	12	6925370	Silent	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	1299	6925370	126926525	43	52019										
PIP4K2C	0	genome.wustl.edu	37	chr12	57988969	57988969	+	Frame_Shift_Del	DEL	C	C	-													0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccccaggtcttcaggaacctCcgtgatcgatttggcattga							TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	57988969	57988969	C	-	DEL	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	frame_shift_del	c.333	p.R112fs	0.988	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	334	0	0	303	110	26.57	-	-	-	-	57988969	C	-	57988969	7	5	581	1	0	1	0	1	0	0	0	0	12012	842	30	0	343	0	PIP4K2C	12	57988969	Frame_Shift_Del	DEL	C	TCGA-BH-A18T-01A-11D-A12B-09	51063599	57988969	75862926	44	52020										
CCT2	0	genome.wustl.edu	37	chr12	69991764	69991764	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ttaggctgttctgagatgttGatggctcatgctgtgacaca	12	7	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	69991764	69991764	G	C	SNP	CCT2	ENST00000299300	human	ensembl	69_37n	1	known	missense	c.1248	p.L416F	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	107	0	0	61	49	44.14	-	-	-	C	69991764	G	C	69991764	3	2	581	1	0	0	0	0	1	0	0	0	2982	1281	45	2	1298	2	CCT2	12	69991764	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	12002795	69991764	63860131	45	52021										
CAPS2	0	genome.wustl.edu	37	chr12	75715242	75715242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	atttgattttgtattttctgCatttctctgactatactgct	5	7	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	75715242	75715242	C	T	SNP	CAPS2	ENST00000409445	human	ensembl	69_37n	-1	known	missense	c.463	p.A155T	0.262	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS2	HGNC	ENSG00000180881	919	3	0.33	803	266	24.86	-	-	-	T	75715242	C	T	75715242	3	4	581	1	0	0	0	0	1	0	0	0	2663	710	25	4	1262	4	CAPS2	12	75715242	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	5723478	75715242	58136653	46	52022										
KSR2	0	genome.wustl.edu	37	chr12	117962668	117962668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ggaactgacctggtgatgatGgccaggtgaggcgggctcat	17	8	1	4			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	12	117962668	117962668	G	A	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.2208	p.A736	0.993	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	41	0	0	25	18	41.86	-	-	-	A	117962668	G	A	117962668	2	1	581	1	0	0	0	0	0	0	0	1	8636	1335	47	4		4	KSR2	12	117962668	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	42247426	117962668	15889227	47	52023										
NUPL1	0	genome.wustl.edu	37	chr13	25882072	25882072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tgccactgggttcactctagGaggaacaaatacaggtgagg	13	8	2	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	13	25882072	25882072	G	A	SNP	NUPL1	ENST00000381736	human	ensembl	69_37n	1	known	missense	c.236	p.G79E	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	257	0	0	119	70	36.84	-	-	-	A	25882072	G	A	25882072	3	1	581	1	0	0	0	0	1	0	0	0	10847	1174	41	2	242	2	NUPL1	13	25882072	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		25882072	89287806	48	52024										
KATNAL1	0	genome.wustl.edu	37	chr13	30854258	30854258	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	atctctaaatggttcatcttGacaggacacagggaaatctg	9	8	4	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	13	30854258	30854258	G	C	SNP	KATNAL1	ENST00000380615	human	ensembl	69_37n	-1	known	missense	c.265	p.Q89E	0.649	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	358	0	0	109	214	66.05	-	-	-	C	30854258	G	C	30854258	3	2	581	1	0	0	0	0	1	0	0	0	8039	1299	45	2	1243	2	KATNAL1	13	30854258	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	4972186	30854258	84315620	49	52025										
FOXA1	0	genome.wustl.edu	37	chr14	38061531	38061531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tggcgtcgccgccgccgcccGcgcggctgcggcccaggttg	17	18	0	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	14	38061531	38061531	G	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.458	p.A153V	0.991	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	31	0	0	18	24	57.14	-	-	-	A	38061531	G	A	38061531	3	1	581	1	0	0	0	0	1	0	0	0	6035	1087	38	1	964	1	FOXA1	14	38061531	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		38061531	69288009	50	52026										
MAGEL2	0	genome.wustl.edu	37	chr15	23890637	23890637	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gcacagaaggtggcagcaaaGatcatgcggtcttttgaagg	14	7	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	15	23890637	23890637	G	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	silent	c.444	p.I148	0.988	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	82	0	0	123	35	22.15	-	-	-	T	23890637	G	T	23890637	2	4	581	1	0	0	0	0	0	0	0	1	9260	932	33	2		2	MAGEL2	15	23890637	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		23890637	78640755	51	52027										
LIPC	0	genome.wustl.edu	37	chr15	58830595	58830595	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gctgcatgagatgaagaccaGattcctgctctttggagaaa	11	8	1	5			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	15	58830595	58830595	G	C	SNP	LIPC	ENST00000299022	human	ensembl	69_37n	1	known	missense	c.152	p.R51T	0.390	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_hep,prints_Lipase,prints_Lipo_Lipase,pfscan_LipOase_LH2	-	no_errors	LIPC	HGNC	ENSG00000166035	278	0	0	164	66	28.7	-	-	-	C	58830595	G	C	58830595	3	2	581	1	0	0	0	0	1	0	0	0	8876	942	33	2	158	2	LIPC	15	58830595	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	34939958	58830595	43700797	52	52028										
CSPG4	0	genome.wustl.edu	37	chr15	75980944	75980944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	cctgaaccacctcataatggAaggttggggggcttgggcct	14	10	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	15	75980944	75980944	A	G	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.2462	p.F821S	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	19	0	0	3	14	82.35	-	-	-	G	75980944	A	G	75980944	3	3	581	1	0	0	0	0	1	0	0	0	3992	246	9	5	4538	5	CSPG4	15	75980944	Missense_Mutation	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	17150349	75980944	26550448	53	52029										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84611369	84611369	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tggcatgtgggctcttggggGccctgctcagctacctgtgg	16	11	2	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	15	84611369	84611369	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.2139	p.G713	0.001	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	68	0	0	78	11	12.36	-	-	-	T	84611369	G	T	84611369	2	4	581	1	0	0	0	0	0	0	0	1	276	1190	42	4		4	ADAMTSL3	15	84611369	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	8630425	84611369	17920023	54	52030										
SSTR5	0	genome.wustl.edu	37	chr16	1129033	1129033	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ctggtgtgtgcggccgggctGggcgggaacacgctggtcat	19	10	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	16	1129033	1129033	G	C	SNP	SSTR5	ENST00000293897	human	ensembl	69_37n	1	known	silent	c.165	p.L55	0.993	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	SSTR5	HGNC	ENSG00000162009	30	0	0	17	20	54.05	-	-	-	C	1129033	G	C	1129033	2	2	581	1	0	0	0	0	0	0	0	1	15292	1335	47	4		4	SSTR5	16	1129033	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		1129033	89225720	55	52031										
UMOD	0	genome.wustl.edu	37	chr16	20346808	20346808	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	aaggacctgaacttacccaaGctgctaaaagcccttgagac	8	12	0	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	16	20346808	20346808	G	C	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	missense	c.1956	p.S652R	0.276	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	243	1	0.41	146	85	36.8	-	-	-	C	20346808	G	C	20346808	3	2	581	1	0	0	0	0	1	0	0	0	17076	962	34	4	73	4	UMOD	16	20346808	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	19217775	20346808	70007945	56	52032										
LYRM1	0	genome.wustl.edu	37	chr16	20931494	20931494	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	atagatgaatgcacagccagGattgaaattggactgcatta	10	6	0	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	16	20931494	20931494	G	A	SNP	LYRM1	ENST00000219168	human	ensembl	69_37n	1	known	silent	c.210	p.R70	1.000	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	LYRM1	HGNC	ENSG00000102897	373	0	0	361	93	20.44	-	-	-	A	20931494	G	A	20931494	2	1	581	1	0	0	0	0	0	0	0	1	9186	1165	41	2		2	LYRM1	16	20931494	Silent	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	584686	20931494	69423259	57	52033										
CACNG3	0	genome.wustl.edu	37	chr16	24372732	24372732	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccaacgccggagaccccgggCagcgtgactccaaaaaaagt	11	14	0	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	16	24372732	24372732	C	A	SNP	CACNG3	ENST00000005284	human	ensembl	69_37n	1	known	missense	c.496	p.Q166K	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	221	0	0	159	105	39.77	-	-	-	A	24372732	C	A	24372732	3	1	581	1	0	0	0	0	1	0	0	0	2583	711	25	4	510	4	CACNG3	16	24372732	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	3441238	24372732	65982021	58	52034										
OR3A2	0	genome.wustl.edu	37	chr17	3181599	3181599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gcctgccatgatgaaacccaCagcaaagagcagcagctcat	9	13	1	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	17	3181599	3181599	C	A	SNP	OR3A2	ENST00000408891	human	ensembl	69_37n	-1	known	missense	c.631	p.V211L	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR3A2	HGNC	ENSG00000221882	204	1	0.49	53	132	71.35	-	-	-	A	3181599	C	A	3181599	3	1	581	1	0	0	0	0	1	0	0	0	11111	478	17	4	338	4	OR3A2	17	3181599	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		3181599	78013611	59	52035										
TP53	0	genome.wustl.edu	37	chr17	7579368	7579368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gaagcccagacggaaaccgtAgctgccctggtaggttttct	12	11	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	17	7579368	7579368	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.319	p.Y107D	0.906	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	68	0	0	17	26	60.47	-	-	-	C	7579368	A	C	7579368	3	2	581	1	0	0	0	0	1	0	0	0	16477	420	15	5	983	5	TP53	17	7579368	Missense_Mutation	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	4397769	7579368	73615842	60	52036										
STAT5B	0	genome.wustl.edu	37	chr17	40364190	40364190	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccacagcactttgtcaggcaCggcaaatggcaccctgccct	9	16	1	0			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	17	40364190	40364190	C	G	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.1492	p.V498L	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	125	0	0	90	32	26.23	-	-	-	G	40364190	C	G	40364190	3	3	581	1	0	0	0	0	1	0	0	0	15360	536	19	3	899	3	STAT5B	17	40364190	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	32784822	40364190	40831020	61	52037										
RPS6KB1	0	genome.wustl.edu	37	chr17	58011559	58011559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	aaactaacagactttggactAtgcaaagaatctattcatga	6	7	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	17	58011559	58011559	A	G	SNP	RPS6KB1	ENST00000225577	human	ensembl	69_37n	1	known	silent	c.717	p.L239	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443	317	0	0	67	275	80.41	-	-	-	G	58011559	A	G	58011559	2	3	581	1	0	0	0	0	0	0	0	1	13742	436	16	5		5	RPS6KB1	17	58011559	Silent	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	17647369	58011559	23183651	62	52038										
COLEC12	0	genome.wustl.edu	37	chr18	346546	346546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	catttagattgctggtcagcGtccgcaggtggtgggctgtg	16	8	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	18	346546	346546	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	missense	c.1076	p.T359M	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	540	0	0	153	339	68.76	-	-	-	A	346546	G	A	346546	3	1	581	1	0	0	0	0	1	0	0	0	3742	1145	40	1	1176	1	COLEC12	18	346546	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		346546	77730702	63	52039										
WDR7	0	genome.wustl.edu	37	chr18	54362267	54362267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gaattatagatcagctgagtGtgattcccaatagtaatgaa	9	5	1	4			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	18	54362267	54362267	G	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	missense	c.1195	p.V399L	1.000	superfamily_Quinonprotein_ADH-like	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	257	0	0	427	64	13.03	-	-	-	T	54362267	G	T	54362267	3	4	581	1	0	0	0	0	1	0	0	0	17417	1377	48	4	1233	4	WDR7	18	54362267	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	54015721	54362267	23714981	64	52040										
ZCCHC2	0	genome.wustl.edu	37	chr18	60209735	60209735	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gttttttttctttcagctgtAcacattgagaagataatgtt	7	5	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	18	60209735	60209735	A	T	SNP	ZCCHC2	ENST00000585873	human	ensembl	69_37n	1	known	missense	c.814	p.T272S	1.000	superfamily_Phox	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC2	HGNC	ENSG00000141664	399	0	0	589	151	20.38	-	-	-	T	60209735	A	T	60209735	3	4	581	1	0	0	0	0	1	0	0	0	17683	378	14	5	1066	5	ZCCHC2	18	60209735	Missense_Mutation	SNP	A	TCGA-BH-A18T-01A-11D-A12B-09	5847468	60209735	17867513	65	52041										
IL12RB1	0	genome.wustl.edu	37	chr19	18173028	18173028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	gccaaggacgcccacgagaaGgatgctcaggaagctcccca	12	14	1	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	19	18173028	18173028	G	T	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.1678	p.L560I	0.985	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	134	0	0	165	46	21.8	-	-	-	T	18173028	G	T	18173028	3	4	581	1	0	0	0	0	1	0	0	0	7680	1000	35	4	326	4	IL12RB1	19	18173028	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09		18173028	40955955	66	52042										
LILRA1	0	genome.wustl.edu	37	chr19	55107251	55107251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	tgacttcctccagctccctgGcccacagccccaggctgggc	10	19	0	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	19	55107251	55107251	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	missense	c.809	p.G270D	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	212	0	0	66	108	62.07	-	-	-	A	55107251	G	A	55107251	3	1	581	1	0	0	0	0	1	0	0	0	8839	1203	42	4	827	4	LILRA1	19	55107251	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	36934223	55107251	4021732	67	52043										
MYH7B	0	genome.wustl.edu	37	chr20	33586607	33586607	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	acacgaggaggaggctgaggCccaggctgagctgcagcggc	18	11	0	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	20	33586607	33586607	C	A	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.4205	p.A1402D	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	32	0	0	17	14	43.75	-	-	-	A	33586607	C	A	33586607	3	1	581	1	0	0	0	0	1	0	0	0	10112	739	26	4	4335	4	MYH7B	20	33586607	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		33586607	29438913	68	52044										
ALAS2	0	genome.wustl.edu	37	chrX	55052441	55052441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ctgcagtcaccatcttgaacCtaaagtcctgcagaagacat	7	12	2	3			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	X	55052441	55052441	C	G	SNP	ALAS2	ENST00000396198	human	ensembl	69_37n	-1	novel	missense	c.65	p.R22T	0.119	NULL	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	74	0	0	36	10	21.74	-	-	-	G	55052441	C	G	55052441	3	3	581	1	0	0	0	0	1	0	0	0	485	681	24	4	1810	4	ALAS2	23	55052441	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09		55052441	100218119	69	52045										
GPRASP2	0	genome.wustl.edu	37	chrX	101972006	101972006	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ccaatgcgagaacgaagtttCacgttctgaaaatgctattg	9	8	2	2			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	X	101972006	101972006	C	T	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.2209	p.H737Y	0.497	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	265	0	0	61	102	62.58	-	-	-	T	101972006	C	T	101972006	3	4	581	1	0	0	0	0	1	0	0	0	6774	826	29	2	2211	2	GPRASP2	23	101972006	Missense_Mutation	SNP	C	TCGA-BH-A18T-01A-11D-A12B-09	46919565	101972006	53298554	70	52046										
KLHL13	0	genome.wustl.edu	37	chrX	117033283	117033283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114285714285714	8	0.447949480421011	1.47025388404699	1.79187192118227	1.13170858179933	0.637186343068696	1	0	ctctgacagtggtcattggcGccttctggatccatttgtca	10	11	4	1			TCGA-BH-A18T-01A-11D-A12B-09	TCGA-BH-A18T-11A-42D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e0ddfcb-e847-4132-bdce-aaee2e027b28	9cfbb971-1628-4eda-9d96-efa55b7d4138	X	117033283	117033283	G	A	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.1565	p.A522V	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	287	0	0	46	112	70	-	-	-	A	117033283	G	A	117033283	3	1	581	1	0	0	0	0	1	0	0	0	8422	1087	38	1	415	1	KLHL13	23	117033283	Missense_Mutation	SNP	G	TCGA-BH-A18T-01A-11D-A12B-09	15061277	117033283	38237277	71	52047										
KCNAB2	0	genome.wustl.edu	37	chr1	6157368	6157369	+	Frame_Shift_Ins	INS	-	-	G													0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggagtcagctccgtgctcctINSgggggcctccaatgcggacc							TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	6157368	6157369	-	G	INS	KCNAB2	ENST00000378083	human	ensembl	69_37n	1	known	frame_shift_ins	c.1109_1110	p.A372fs	1.000:1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB2	HGNC	ENSG00000069424	138	0	0	59	11	15.71	-	-	-	G	6157369	-	G	6157368	7	5	582	1	0	1	1	0	0	0	0	0	8064	1580	55	0	1019	0	KCNAB2	1	6157368	Frame_Shift_Ins	INS	-	TCGA-BH-A18U-01A-21D-A12B-09		6157368	243093253	1	52048										
EPHB2	0	genome.wustl.edu	37	chr1	23111019	23111019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cgtggcgcccaccgcatccaCgtggagatgaagttttcggt	13	12	0	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	23111019	23111019	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	silent	c.261	p.H87	0.971	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	90	0	0	50	13	20.63	-	-	-	T	23111019	C	T	23111019	2	4	582	1	0	0	0	0	0	0	0	1	5212	535	19	1		1	EPHB2	1	23111019	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	16953651	23111019	226139602	2	52049										
SHC1	0	genome.wustl.edu	37	chr1	154938529	154938529	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggttctggacgttgacatagGagggatcatcaaaaagctct	12	7	4	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	154938529	154938529	G	C	SNP	SHC1	ENST00000448116	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427C	1.000	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2,prints_PID_domain,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691	140	0	0	137	17	11.04	-	-	-	C	154938529	G	C	154938529	3	2	582	1	0	0	0	0	1	0	0	0	14359	1174	41	2	486	2	SHC1	1	154938529	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	131827510	154938529	94312092	3	52050										
TNN	0	genome.wustl.edu	37	chr1	175096180	175096180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccccctctgctcagatccacGgctacattctgacttaccag	6	17	3	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	175096180	175096180	G	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.3004	p.G1002S	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	427	0	0	427	70	14.06	-	-	-	A	175096180	G	A	175096180	3	1	582	1	0	0	0	0	1	0	0	0	16418	1116	39	1	3050	1	TNN	1	175096180	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	20157651	175096180	74154441	4	52051										
FAM5B	0	genome.wustl.edu	37	chr1	177199234	177199234	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gctcaggagtatgctgacttCatggagcggtaccgccaggg	15	10	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	177199234	177199234	C	T	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	silent	c.222	p.F74	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	26	0	0	31	6	16.22	-	-	-	T	177199234	C	T	177199234	2	4	582	1	0	0	0	0	0	0	0	1	5638	825	29	2		2	FAM5B	1	177199234	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	2103054	177199234	72051387	5	52052										
RBM34	0	genome.wustl.edu	37	chr1	235301419	235301419	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aaattaccttttcaatgcttGcgtggcagcactctcctcct	6	13	2	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	235301419	235301419	G	A	SNP	RBM34	ENST00000408888	human	ensembl	69_37n	-1	known	nonsense	c.772	p.Q258*	0.006	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM34	HGNC	ENSG00000188739	421	1	0.24	488	64	11.59	-	-	-	A	235301419	G	A	235301419	4	1	582	1	0	0	0	0	0	1	0	0	13214	1328	46	4	540	4	RBM34	1	235301419	Nonsense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	58102185	235301419	13949202	6	52053										
NRBP1	0	genome.wustl.edu	37	chr2	27663559	27663559	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tggaattagataaattccttGaagatgtcaggtgagagcag	12	4	1	4			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	27663559	27663559	G	C	SNP	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	missense	c.1183	p.E395Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	458	0	0	324	70	17.77	-	-	-	C	27663559	G	C	27663559	3	2	582	1	0	0	0	0	1	0	0	0	10715	1291	45	2	1229	2	NRBP1	2	27663559	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		27663559	215535814	7	52054										
C2orf71	0	genome.wustl.edu	37	chr2	29296696	29296696	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cattttgctgtccttttccaTttggaagtatcttgggtact	8	8	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	29296696	29296696	T	C	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.432	p.K144	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	852	0	0	452	93	17.06	-	-	-	C	29296696	T	C	29296696	2	2	582	1	0	0	0	0	0	0	0	1	2211	1490	52	5		5	C2orf71	2	29296696	Silent	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	1633137	29296696	213902677	8	52055										
POTEE	0	genome.wustl.edu	37	chr2	132022031	132022031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	accaacacagtgctgtctggCggcaccaccatgtaccctgg	10	15	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	11	0	0	4	8	66.67	-	-	-	T	132022031	C	T	132022031	2	4	582	1	0	0	0	0	0	0	0	1	12338	755	27	1		1	POTEE	2	132022031	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	102725335	132022031	111177342	9	52056										
KCNH7	0	genome.wustl.edu	37	chr2	163291915	163291915	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atccaaccatccgattttgtCagtcaggtaaggcctttcta	7	11	3	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	163291915	163291915	C	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	missense	c.1747	p.D583Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	434	0	0	305	44	12.61	-	-	-	A	163291915	C	A	163291915	3	1	582	1	0	0	0	0	1	0	0	0	8091	826	29	2	1945	2	KCNH7	2	163291915	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	31269884	163291915	79907458	10	52057										
KBTBD10	0	genome.wustl.edu	37	chr2	170366479	170366479	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cttccgtgagtactttttatCtgaaattgatgaggcgaaaa	9	6	1	4			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	170366479	170366479	C	G	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	missense	c.191	p.S64C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	442	0	0	325	59	15.36	-	-	-	G	170366479	C	G	170366479	3	3	582	1	0	0	0	0	1	0	0	0	8044	913	32	2	193	2	KBTBD10	2	170366479	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	7074564	170366479	72832894	11	52058										
NRP2	0	genome.wustl.edu	37	chr2	206608200	206608200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggaagccagagcatttgtgcGcaagttcaaagtctcctaca	10	10	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	206608200	206608200	G	A	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.1565	p.R522H	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	135	0	0	113	21	15.67	-	-	-	A	206608200	G	A	206608200	3	1	582	1	0	0	0	0	1	0	0	0	10734	1087	38	1	1599	1	NRP2	2	206608200	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	36241721	206608200	36591173	12	52059										
IRAK2	0	genome.wustl.edu	37	chr3	10251290	10251290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cagggtcctctccagccagaGcccaccagccggcctttctc	9	19	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	10251290	10251290	G	A	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	missense	c.442	p.A148T	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	126	0	0	109	19	14.62	-	-	-	A	10251290	G	A	10251290	3	1	582	1	0	0	0	0	1	0	0	0	7877	971	34	4	456	4	IRAK2	3	10251290	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		10251290	187771140	13	52060										
MON1A	0	genome.wustl.edu	37	chr3	49947969	49947969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggttgcgggccagcaggatgGagaagaccaggctgcgcgca	18	10	0	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	49947969	49947969	G	A	SNP	MON1A	ENST00000296473	human	ensembl	69_37n	-1	known	missense	c.1253	p.S418F	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077	37	0	0	31	7	17.95	-	-	-	A	49947969	G	A	49947969	3	1	582	1	0	0	0	0	1	0	0	0	9770	1174	41	2	717	2	MON1A	3	49947969	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	39696679	49947969	148074461	14	52061										
LRTM1	0	genome.wustl.edu	37	chr3	54959016	54959016	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gaattgttggacaagtttaaGgtcatgagccatggcactga	12	6	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	54959016	54959016	G	A	SNP	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	silent	c.234	p.T78	0.966	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	222	0	0	210	26	10.97	-	-	-	A	54959016	G	A	54959016	2	1	582	1	0	0	0	0	0	0	0	1	9110	987	35	4		4	LRTM1	3	54959016	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	5011047	54959016	143063414	15	52062										
STAG1	0	genome.wustl.edu	37	chr3	136062775	136062775	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	agtacagtggatgtgagttgTggtgctggcagggggccagg	20	5	0	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	136062775	136062775	T	C	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	silent	c.3345	p.P1115	0.961	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	255	0	0	250	30	10.64	-	-	-	C	136062775	T	C	136062775	2	2	582	1	0	0	0	0	0	0	0	1	15333	1683	59	5		5	STAG1	3	136062775	Silent	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	81103759	136062775	61959655	16	52063										
STAG1	0	genome.wustl.edu	37	chr3	136076644	136076644	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cagattaggaggtggatactCttgtcctttctgattttggt	11	6	2	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	136076644	136076644	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.2983	p.E995Q	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	472	0	0	482	57	10.58	-	-	-	G	136076644	C	G	136076644	3	3	582	1	0	0	0	0	1	0	0	0	15333	922	32	2	821	2	STAG1	3	136076644	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	13869	136076644	61945786	17	52064										
EIF4G1	0	genome.wustl.edu	37	chr3	184035137	184035137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccctagccgggcccagccccCgagcagtgcagcctcccgag	12	20	0	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	184035137	184035137	C	T	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.197	p.P66L	0.998	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	77	0	0	60	22	26.83	-	-	-	T	184035137	C	T	184035137	3	4	582	1	0	0	0	0	1	0	0	0	5073	652	23	1	186	1	EIF4G1	3	184035137	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	47958493	184035137	13987293	18	52065										
SPARCL1	0	genome.wustl.edu	37	chr4	88415533	88415533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aactaacaccaggagccaaaAaatcagtgttctctgagagt	8	9	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	88415533	88415533	A	G	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	missense	c.419	p.F140S	0.004	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	569	0	0	257	89	25.72	-	-	-	G	88415533	A	G	88415533	3	3	582	1	0	0	0	0	1	0	0	0	15087	14	1	5	1607	5	SPARCL1	4	88415533	Missense_Mutation	SNP	A	TCGA-BH-A18U-01A-21D-A12B-09		88415533	102738743	19	52066										
PAPSS1	0	genome.wustl.edu	37	chr4	108578129	108578129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cattcaatggggttgcccaaCcttctgccaaaacctgcacc	7	15	2	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	108578129	108578129	C	T	SNP	PAPSS1	ENST00000265174	human	ensembl	69_37n	-1	known	missense	c.818	p.G273D	1.000	superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801	391	0	0	179	37	17.05	-	-	-	T	108578129	C	T	108578129	3	4	582	1	0	0	0	0	1	0	0	0	11507	507	18	4	1080	4	PAPSS1	4	108578129	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	20162596	108578129	82576147	20	52067										
NR3C2	0	genome.wustl.edu	37	chr4	149075853	149075853	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atgttttcaaggaccataacGggggaaggtgtgagcgctcg	15	7	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	149075853	149075853	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	silent	c.2226	p.P742	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	425	0	0	138	49	26.06	-	-	-	A	149075853	G	A	149075853	2	1	582	1	0	0	0	0	0	0	0	1	10704	1103	39	1		1	NR3C2	4	149075853	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	40497724	149075853	42078423	21	52068										
CCDC111	0	genome.wustl.edu	37	chr4	185606574	185606574	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgttgcagtagaaaccattGaaggttttcagtgttctccc	9	9	2	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	185606574	185606574	G	C	SNP	CCDC111	ENST00000314970	human	ensembl	69_37n	1	known	missense	c.1108	p.E370Q	0.992	NULL	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	CCDC111	HGNC	ENSG00000164306	1011	0	0	740	112	13.13	-	-	-	C	185606574	G	C	185606574	3	2	582	1	0	0	0	0	1	0	0	0	2773	1291	45	2	1138	2	CCDC111	4	185606574	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	36530721	185606574	5547702	22	52069										
MYO10	0	genome.wustl.edu	37	chr5	16711286	16711286	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tacccagctttgcggattctCacagtctccagcatccctga	7	15	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	16711286	16711286	C	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	silent	c.1998	p.V666	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	139	0	0	101	13	11.3	-	-	-	T	16711286	C	T	16711286	2	4	582	1	0	0	0	0	0	0	0	1	10134	813	29	2		2	MYO10	5	16711286	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		16711286	164203974	23	52070										
RAB3C	0	genome.wustl.edu	37	chr5	58021869	58021869	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atacaggactatcaccacagCctattatcgtggagccatgg	9	11	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	58021869	58021869	C	A	SNP	RAB3C	ENST00000282878	human	ensembl	69_37n	1	known	missense	c.293	p.A98D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932	364	0	0	328	55	14.36	-	-	-	A	58021869	C	A	58021869	3	1	582	1	0	0	0	0	1	0	0	0	13016	739	26	4	303	4	RAB3C	5	58021869	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	41310583	58021869	122893391	24	52071										
CTNNA1	0	genome.wustl.edu	37	chr5	138260325	138260325	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggtcattcacgtagtcacctCagagatggacaactatgagc	10	10	4	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	138260325	138260325	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	missense	c.1673	p.S558L	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	118	0	0	76	13	14.61	-	-	-	T	138260325	C	T	138260325	3	4	582	1	0	0	0	0	1	0	0	0	4044	838	29	2	1715	2	CTNNA1	5	138260325	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	80238456	138260325	42654935	25	52072										
PCDHB1	0	genome.wustl.edu	37	chr5	140433272	140433272	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gactgtaatttctctaacaaCctggtacaaggacaaggcaa	8	9	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	140433272	140433272	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	silent	c.2217	p.N739	0.126	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	371	0	0	197	107	35.08	-	-	-	T	140433272	C	T	140433272	2	4	582	1	0	0	0	0	0	0	0	1	11607	506	18	4		4	PCDHB1	5	140433272	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	2172947	140433272	40481988	26	52073										
PCDHB6	0	genome.wustl.edu	37	chr5	140530673	140530673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cgtttgggaaggtatcttacGccctgtttcaagtcgatgac	11	9	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	140530673	140530673	G	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.835	p.A279T	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	165	0	0	153	27	14.92	-	-	-	A	140530673	G	A	140530673	3	1	582	1	0	0	0	0	1	0	0	0	11619	1087	38	1	837	1	PCDHB6	5	140530673	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	97401	140530673	40384587	27	52074										
GJA10	0	genome.wustl.edu	37	chr6	90604284	90604284	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tgaccatcctcttcatcttcCgaatgctggtacttcgtgtg	8	12	3	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	6	90604284	90604284	C	T	SNP	GJA10	ENST00000369352	human	ensembl	69_37n	1	known	nonsense	c.97	p.R33*	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355	277	1	0.36	99	37	27.21	-	-	-	T	90604284	C	T	90604284	4	4	582	1	0	0	0	0	0	1	0	0	6453	644	23	1	99	1	GJA10	6	90604284	Nonsense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		90604284	80510783	28	52075										
WBSCR17	0	genome.wustl.edu	37	chr7	70886058	70886058	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	catcagccccccaaaagactGgtgggacgccggagaccctt	11	15	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	70886058	70886058	G	A	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	nonsense	c.929	p.W310*	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	88	0	0	18	39	68.42	-	-	-	A	70886058	G	A	70886058	4	1	582	1	0	0	0	0	0	1	0	0	17361	1357	47	4	947	4	WBSCR17	7	70886058	Nonsense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		70886058	88252605	29	52076										
ZNF3	0	genome.wustl.edu	37	chr7	99662436	99662436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aggtgtcaggaggttccacaCtcgccagttcactggagcag	13	11	2	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	99662436	99662436	C	T	SNP	ZNF3	ENST00000413658	human	ensembl	69_37n	-1	known	missense	c.371	p.S124N	0.004	pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526	163	0	0	101	36	26.09	-	-	-	T	99662436	C	T	99662436	3	4	582	1	0	0	0	0	1	0	0	0	17925	565	20	4	28	4	ZNF3	7	99662436	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	28776378	99662436	59476227	30	52077										
CFTR	0	genome.wustl.edu	37	chr7	117306992	117306992	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	agaacaaagtgcggcagtacGattccatccagaaactgctg	10	10	0	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	117306992	117306992	G	T	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.4273	p.D1425Y	0.998	pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	93	0	0	57	9	13.64	-	-	-	T	117306992	G	T	117306992	3	4	582	1	0	0	0	0	1	0	0	0	3323	1058	37	3	4379	3	CFTR	7	117306992	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	17644556	117306992	41831671	31	52078										
SMARCD3	0	genome.wustl.edu	37	chr7	150937577	150937577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgtgaggcgctggggaatcTcagaaaacttcagccgggga	15	9	2	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	150937577	150937577	T	C	SNP	SMARCD3	ENST00000262188	human	ensembl	69_37n	-1	known	missense	c.971	p.E324G	1.000	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014	456	0	0	218	52	19.26	-	-	-	C	150937577	T	C	150937577	3	2	582	1	0	0	0	0	1	0	0	0	14868	1551	54	5	500	5	SMARCD3	7	150937577	Missense_Mutation	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	33630585	150937577	8201086	32	52079										
CYP7B1	0	genome.wustl.edu	37	chr8	65509394	65509394	+	Frame_Shift_Del	DEL	A	A	-													0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	catttgctggttccagttccAaacggcattaggtaacactt							TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	8	65509394	65509394	A	-	DEL	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	frame_shift_del	c.1326	p.F442fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	141	0	0	230	30	11.49	-	-	-	-	65509394	A	-	65509394	7	5	582	1	0	1	0	1	0	0	0	0	4228	127	5	0	198	0	CYP7B1	8	65509394	Frame_Shift_Del	DEL	A	TCGA-BH-A18U-01A-21D-A12B-09		65509394	80854628	33	52080										
CBWD1	0	genome.wustl.edu	37	chr9	156515	156515	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gataaggccatcaggtttctCttctgttaaatgctaaacaa	7	8	3	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	156515	156515	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	69_37n	-1	known	missense	c.541	p.E181Q	1.000	pfam_Cbl_biosynth_CobW-like	pfam_Cbl_biosynth_CobW-like,pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785	700	0	0	272	106	28.04	-	-	-	G	156515	C	G	156515	3	3	582	1	0	0	0	0	1	0	0	0	2737	922	32	2	682	2	CBWD1	9	156515	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		156515	141056916	34	52081										
BNC2	0	genome.wustl.edu	37	chr9	16436220	16436220	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tccaccatcattggggtcatCatcttcatcatcaaactcat	4	13	8	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	16436220	16436220	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.1972	p.D658N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	450	0	0	147	45	23.44	-	-	-	T	16436220	C	T	16436220	3	4	582	1	0	0	0	0	1	0	0	0	1480	826	29	2	1335	2	BNC2	9	16436220	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	16279705	16436220	124777211	35	52082										
CEP78	0	genome.wustl.edu	37	chr9	80880403	80880403	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aagaagaaaagaaggcgcttGaagatgaaaaaccagaaccg	11	6	0	7			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	80880403	80880403	G	A	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	missense	c.1744	p.E582K	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	345	0	0	322	54	14.36	-	-	-	A	80880403	G	A	80880403	3	1	582	1	0	0	0	0	1	0	0	0	3291	1291	45	2	1798	2	CEP78	9	80880403	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	64444183	80880403	60333028	36	52083										
DAPK1	0	genome.wustl.edu	37	chr9	90322160	90322160	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gccgggatgccgcagactttTtgctgaaggcatcctctgtg	13	11	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	90322160	90322160	T	A	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	missense	c.4249	p.L1417M	0.255	pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	65	0	0	25	7	21.88	-	-	-	A	90322160	T	A	90322160	3	1	582	1	0	0	0	0	1	0	0	0	4267	1838	64	5	4272	5	DAPK1	9	90322160	Missense_Mutation	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	9441757	90322160	50891271	37	52084										
DAB2IP	0	genome.wustl.edu	37	chr9	124528856	124528856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccgcccggacatcagtgagcGgctcatcagcgcctccctct	10	18	4	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	124528856	124528856	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.1544	p.R515Q	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	65	0	0	41	10	19.61	-	-	-	A	124528856	G	A	124528856	3	1	582	1	0	0	0	0	1	0	0	0	4251	1116	39	1	1494	1	DAB2IP	9	124528856	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	34206696	124528856	16684575	38	52085										
SIRT1	0	genome.wustl.edu	37	chr10	69672725	69672725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atgaaagaacttcagtggctGgaacagtgagaaaatgctgg	13	5	1	3			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	69672725	69672725	G	A	SNP	SIRT1	ENST00000212015	human	ensembl	69_37n	1	known	missense	c.1852	p.G618R	1.000	NULL	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT1	HGNC	ENSG00000096717	266	0	0	223	92	29.21	-	-	-	A	69672725	G	A	69672725	3	1	582	1	0	0	0	0	1	0	0	0	14426	1349	47	4	1882	4	SIRT1	10	69672725	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		69672725	65862022	39	52086										
KIF20B	0	genome.wustl.edu	37	chr10	91497970	91497970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gaaactcttatacagcagctGaaagaagaattgcaagaaaa	8	6	1	4			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	91497970	91497970	G	A	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	silent	c.3462	p.L1154	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	71	0	0	58	9	13.43	-	-	-	A	91497970	G	A	91497970	2	1	582	1	0	0	0	0	0	0	0	1	8339	1277	45	2		2	KIF20B	10	91497970	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	21825245	91497970	44036777	40	52087										
MKI67	0	genome.wustl.edu	37	chr10	129913245	129913245	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aactaagaccaggtaacccaGagcacatctgtccagctgta	8	12	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	129913245	129913245	G	C	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.1427	p.S476C	0.039	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	190	0	0	140	28	16.67	-	-	-	C	129913245	G	C	129913245	3	2	582	1	0	0	0	0	1	0	0	0	9669	942	33	2	8379	2	MKI67	10	129913245	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	38415275	129913245	5621502	41	52088										
GAL	0	genome.wustl.edu	37	chr11	68458384	68458384	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atgtggctcttccctttgcaGaggccggtgccctcgaccgc	12	15	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	68458384	68458384	G	A	SNP	GAL	ENST00000265643	human	ensembl	69_37n	1	known	splice_site	c.302-1	e5-1	0.991	-	-	-	no_errors	GAL	HGNC	ENSG00000069482	91	0	0	80	11	12.09	-	-	-	A	68458384	G	A	68458384	5	1	582	1	0	0	0	0	0	0	1	0	6246	956	33	2	319	2	GAL	11	68458384	Splice_Site	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		68458384	66548132	42	52089										
MRE11A	0	genome.wustl.edu	37	chr11	94192723	94192723	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tgcttcacccatccctctttCtgttagcagtgagagctgca	8	13	3	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	94192723	94192723	C	G	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.1351	p.E451Q	1.000	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	740	2	0.27	459	405	46.82	-	-	-	G	94192723	C	G	94192723	3	3	582	1	0	0	0	0	1	0	0	0	9831	922	32	2	807	2	MRE11A	11	94192723	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	25734339	94192723	40813793	43	52090										
GRIA4	0	genome.wustl.edu	37	chr11	105481745	105481745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atgaggattatttccagacaGattgtcttgttattttctgg	9	5	2	3			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	105481745	105481745	G	C	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.21	p.Q7H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	374	0	0	444	53	10.66	-	-	-	C	105481745	G	C	105481745	3	2	582	1	0	0	0	0	1	0	0	0	6821	933	33	2	23	2	GRIA4	11	105481745	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	11289022	105481745	29524771	44	52091										
MLL	0	genome.wustl.edu	37	chr11	118375784	118375784	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tctactgatagtcctggcccGtctcagatttccaatgcagc	8	13	2	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	118375784	118375784	G	A	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.9168	p.P3056	0.291	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	156	1	0.64	104	102	49.51	-	-	-	A	118375784	G	A	118375784	2	1	582	1	0	0	0	0	0	0	0	1	9691	1132	40	1		1	MLL	11	118375784	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	12894039	118375784	16630732	45	52092										
VWF	0	genome.wustl.edu	37	chr12	6091108	6091108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cgaagggtgggcaaacggtgCggggggcaggagggtgggga	25	5	0	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	6091108	6091108	C	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.7131	p.P2377	0.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	91	0	0	48	11	18.64	-	-	-	T	6091108	C	T	6091108	2	4	582	1	0	0	0	0	0	0	0	1	17343	755	27	1		1	VWF	12	6091108	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		6091108	127760787	46	52093										
NR4A1	0	genome.wustl.edu	37	chr12	52448796	52448796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gagagctattccatgcctacGgccttcccaggtttggcacc	10	14	0	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	52448796	52448796	G	A	SNP	NR4A1	ENST00000545748	human	ensembl	69_37n	1	known	silent	c.846	p.T282	0.000	prints_Nuc_orp_HMR_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358	85	0	0	57	14	19.72	-	-	-	A	52448796	G	A	52448796	2	1	582	1	0	0	0	0	0	0	0	1	10705	1103	39	1		1	NR4A1	12	52448796	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	46357688	52448796	81403099	47	52094										
CAND1	0	genome.wustl.edu	37	chr12	67686481	67686481	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tctgcactaacatgctttctGataaagaacaacttcgagac	6	10	2	3			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	67686481	67686481	G	A	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.292	p.D98N	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	352	0	0	250	30	10.71	-	-	-	A	67686481	G	A	67686481	3	1	582	1	0	0	0	0	1	0	0	0	2640	1290	45	2	302	2	CAND1	12	67686481	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	15237685	67686481	66165414	48	52095										
ZFC3H1	0	genome.wustl.edu	37	chr12	72013172	72013172	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aatttccgcaaaaatggaagAagattatcgcctcgattcta	7	8	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	72013172	72013172	A	G	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	silent	c.5067	p.L1689	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	233	0	0	179	36	16.74	-	-	-	G	72013172	A	G	72013172	2	3	582	1	0	0	0	0	0	0	0	1	17729	233	9	5		5	ZFC3H1	12	72013172	Silent	SNP	A	TCGA-BH-A18U-01A-21D-A12B-09	4326691	72013172	61838723	49	52096										
ERP29	0	genome.wustl.edu	37	chr12	112457615	112457615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cgacacccagtacccctacgGtgagaagcaggatgagttca	11	12	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	112457615	112457615	G	A	SNP	ERP29	ENST00000261735	human	ensembl	69_37n	1	known	missense	c.200	p.G67D	1.000	pfam_ERp29_N,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248	239	0	0	186	37	16.59	-	-	-	A	112457615	G	A	112457615	3	1	582	1	0	0	0	0	1	0	0	0	5279	1261	44	4	206	4	ERP29	12	112457615	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	40444443	112457615	21394280	50	52097										
SRRM4	0	genome.wustl.edu	37	chr12	119419693	119419693	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccctttgggttggcgatggcGagcgttcagcaaggcgagaa	16	9	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	119419693	119419693	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	69_37n	1	known	silent	c.6	p.A2	0.977	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	57	0	0	28	11	27.5	-	-	-	A	119419693	G	A	119419693	2	1	582	1	0	0	0	0	0	0	0	1	15262	1045	37	1		1	SRRM4	12	119419693	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	6962078	119419693	14432202	51	52098										
POLE	0	genome.wustl.edu	37	chr12	133220066	133220066	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gcaaaggtctctgcttcccaGcctgaaaggtgcctcaccag	10	14	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	133220066	133220066	G	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.4404	p.G1468	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	109	0	0	68	11	13.92	-	-	-	C	133220066	G	C	133220066	2	2	582	1	0	0	0	0	0	0	0	1	12270	958	34	4		4	POLE	12	133220066	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	13800373	133220066	631829	52	52099										
GOLGA3	0	genome.wustl.edu	37	chr12	133351861	133351861	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgggtcatggacaggtcttCctgggccatctccaactcag	11	13	4	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	133351861	133351861	C	A	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	nonsense	c.4009	p.E1337*	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	258	0	0	169	29	14.65	-	-	-	A	133351861	C	A	133351861	4	1	582	1	0	0	0	0	0	1	0	0	6606	864	30	2	499	2	GOLGA3	12	133351861	Nonsense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	131795	133351861	500034	53	52100										
SACS	0	genome.wustl.edu	37	chr13	23905513	23905513	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	attcattgggtccataagcaGagtgtaatgaatttcagcag	10	6	2	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	23905513	23905513	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	silent	c.12502	p.L4168	0.997	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	351	0	0	145	44	23.28	-	-	-	A	23905513	G	A	23905513	2	1	582	1	0	0	0	0	0	0	0	1	13890	933	33	2		2	SACS	13	23905513	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		23905513	91264365	54	52101										
FAM155A	0	genome.wustl.edu	37	chr13	107822931	107822931	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgtgctgccgaggctgtgaGcactgtgtgtaagagaatca	14	8	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	107822931	107822931	G	C	SNP	FAM155A	ENST00000375915	human	ensembl	69_37n	-1	known	missense	c.1291	p.L431V	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	355	0	0	122	65	34.57	-	-	-	C	107822931	G	C	107822931	3	2	582	1	0	0	0	0	1	0	0	0	5505	971	34	4	89	4	FAM155A	13	107822931	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	83917418	107822931	7346947	55	52102										
MCF2L	0	genome.wustl.edu	37	chr13	113699676	113699676	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cgtccgtcctgcgcatcgcaGtaagtgccacccggggctct	12	16	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	113699676	113699676	G	T	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	splice_site	c.540+1	e4+1	0.998	-	-	-	no_errors	MCF2L	HGNC	ENSG00000126217	33	0	0	3	15	83.33	-	-	-	T	113699676	G	T	113699676	5	4	582	1	0	0	0	0	0	0	1	0	9450	1043	36	4	650	4	MCF2L	13	113699676	Splice_Site	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	5876745	113699676	1470202	56	52103										
KIAA0391	0	genome.wustl.edu	37	chr14	35742701	35742701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	actcgtggcacataccatatGatgaagacttggtagaaaga	10	7	0	5			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	14	35742701	35742701	G	A	SNP	KIAA0391	ENST00000534898	human	ensembl	69_37n	1	known	missense	c.1681	p.D561N	1.000	NULL	NULL	-	no_errors	RP11-173D9.3	Clone_based_vega_gene	ENSG00000100890	246	0	0	173	22	11.28	-	-	-	A	35742701	G	A	35742701	3	1	582	1	0	0	0	0	1	0	0	0	8224	1290	45	2	1707	2	KIAA0391	14	35742701	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		35742701	71606839	57	52104										
ATG2B	0	genome.wustl.edu	37	chr14	96809459	96809459	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tttttgttttttcttaccacTggtgcagttgaacacactgg	8	8	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	14	96809459	96809459	T	G	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	silent	c.741	p.P247	0.997	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	411	1	0.24	183	113	38.18	-	-	-	G	96809459	T	G	96809459	2	3	582	1	0	0	0	0	0	0	0	1	1098	1567	55	5		5	ATG2B	14	96809459	Silent	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	61066758	96809459	10540081	58	52105										
FAM98B	0	genome.wustl.edu	37	chr15	38757568	38757568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tatcaggagatattaaagatCgtttaaaaaagaaggaggac	10	3	1	3			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	15	38757568	38757568	C	T	SNP	FAM98B	ENST00000397609	human	ensembl	69_37n	1	known	missense	c.316	p.R106C	0.958	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98B	HGNC	ENSG00000171262	248	0	0	123	49	28.49	-	-	-	T	38757568	C	T	38757568	3	4	582	1	0	0	0	0	1	0	0	0	5703	884	31	1	326	1	FAM98B	15	38757568	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		38757568	63773824	59	52106										
FAM192A	0	genome.wustl.edu	37	chr16	57188374	57188374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cagaggggcagtggatggagGggccactcagggaggtgttt	20	6	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	16	57188374	57188374	G	A	SNP	FAM192A	ENST00000309137	human	ensembl	69_37n	-1	known	missense	c.593	p.P198L	0.852	NULL	pfam_Nefa_Nip30_N	-	no_errors	FAM192A	HGNC	ENSG00000172775	109	0	0	80	18	18.37	-	-	-	A	57188374	G	A	57188374	3	1	582	1	0	0	0	0	1	0	0	0	5565	1232	43	4	175	4	FAM192A	16	57188374	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		57188374	33166379	60	52107										
TMCO7	0	genome.wustl.edu	37	chr16	68943146	68943147	+	Frame_Shift_Del	DEL	AG	AG	-													0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gtggcctcggaaaatgaaacAgagttaaaaactgagccctt							TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	16	68943146	68943147	AG	-	DEL	TMCO7	ENST00000261778	human	ensembl	69_37n	1	known	frame_shift_del	c.1833_1834	p.E612fs	0.996:0.996	superfamily_ARM-type_fold	pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TMCO7	HGNC	ENSG00000103047	252	0	0	170	24	12.37	-	-	-	-	68943147	AG	-	68943146	7	5	582	1	0	1	0	1	0	0	0	0	16096	175	7	0	1875	0	TMCO7	16	68943146	Frame_Shift_Del	DEL	AG	TCGA-BH-A18U-01A-21D-A12B-09	11754772	68943146	21411607	61	52108										
ZZEF1	0	genome.wustl.edu	37	chr17	3961435	3961435	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgtctgaacacaggataagGcagggagcaaggacctaaag	13	8	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	3961435	3961435	G	C	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.5018	p.A1673G	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	215	0	0	103	24	18.75	-	-	-	C	3961435	G	C	3961435	3	2	582	1	0	0	0	0	1	0	0	0	18346	1203	42	4	3963	4	ZZEF1	17	3961435	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		3961435	77233775	62	52109										
ZFP3	0	genome.wustl.edu	37	chr17	4996237	4996237	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gagagaagccttatgagtgcCaagaatgtcagaagactttt	11	6	1	5			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	4996237	4996237	C	T	SNP	ZFP3	ENST00000318833	human	ensembl	69_37n	1	known	nonsense	c.1438	p.Q480*	0.069	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787	204	0	0	126	33	20.75	-	-	-	T	4996237	C	T	4996237	4	4	582	1	0	0	0	0	0	1	0	0	17739	595	21	4	1440	4	ZFP3	17	4996237	Nonsense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	1034802	4996237	76198973	63	52110										
TP53	0	genome.wustl.edu	37	chr17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tttcttgcggagattctcttCctctgtgcgccggtctctcc	9	14	4	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	7577082	7577082	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.856	p.E286K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	271	0	0	35	26	42.62	-	-	-	T	7577082	C	T	7577082	3	4	582	1	0	0	0	0	1	0	0	0	16477	864	30	2	430	2	TP53	17	7577082	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	2580845	7577082	73618128	64	52111										
THRA	0	genome.wustl.edu	37	chr17	38233180	38233180	+	Frame_Shift_Del	DEL	C	C	-													0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cggccaatgttccctgaaaaCcagcatgtcaggtgaggctg							TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	38233180	38233180	C	-	DEL	THRA	ENST00000264637	human	ensembl	69_37n	1	known	frame_shift_del	c.110	p.S38fs	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351	186	0	0	103	44	29.33	-	-	-	-	38233180	C	-	38233180	7	5	582	1	0	1	0	1	0	0	0	0	15968	507	18	0	116	0	THRA	17	38233180	Frame_Shift_Del	DEL	C	TCGA-BH-A18U-01A-21D-A12B-09	30656098	38233180	42962030	65	52112										
MED13	0	genome.wustl.edu	37	chr17	60040309	60040309	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aatcaccatctgtggggattCccactttatcccgatccatc	6	14	2	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	60040309	60040309	C	G	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.4868	p.G1623A	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	225	1	0.44	164	27	14.14	-	-	-	G	60040309	C	G	60040309	3	3	582	1	0	0	0	0	1	0	0	0	9501	855	30	2	1696	2	MED13	17	60040309	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	21807129	60040309	21154901	66	52113										
WDR7	0	genome.wustl.edu	37	chr18	54350050	54350050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	atatcaccagactggattagCtccatgagtattattcgatc	7	9	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	18	54350050	54350050	C	T	SNP	WDR7	ENST00000254442	human	ensembl	69_37n	1	known	silent	c.486	p.S162	1.000	superfamily_Quinonprotein_ADH-like	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	186	0	0	91	20	18.02	-	-	-	T	54350050	C	T	54350050	2	4	582	1	0	0	0	0	0	0	0	1	17417	796	28	4		4	WDR7	18	54350050	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09		54350050	23727198	67	52114										
OR4F17	0	genome.wustl.edu	37	chr19	110858	110858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ttcctgctagccaacctctcActcattgatctgtctctgtc	5	15	4	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	110858	110858	A	G	SNP	OR4F17	ENST00000318050	human	ensembl	69_37n	1	known	silent	c.180	p.S60	0.074	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F17	HGNC	ENSG00000176695	88	0	0	12	3	20	-	-	-	G	110858	A	G	110858	2	3	582	1	0	0	0	0	0	0	0	1	11135	146	6	5		5	OR4F17	19	110858	Silent	SNP	A	TCGA-BH-A18U-01A-21D-A12B-09		110858	59018125	68	52115										
C3	0	genome.wustl.edu	37	chr19	6718310	6718310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gtctggatgaagaggtacccGctctgcaggctgaccagcac	13	12	2	3			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	6718310	6718310	G	A	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	silent	c.381	p.S127	0.604	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	123	0	0	101	20	16.53	-	-	-	A	6718310	G	A	6718310	2	1	582	1	0	0	0	0	0	0	0	1	2224	1078	38	1		1	C3	19	6718310	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	6607452	6718310	52410673	69	52116										
LGALS4	0	genome.wustl.edu	37	chr19	39292707	39292707	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccccacgagccattcagaagGctgttccggaccacggtacc	10	16	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	39292707	39292707	G	A	SNP	LGALS4	ENST00000307751	human	ensembl	69_37n	-1	known	silent	c.750	p.S250	0.919	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS4	HGNC	ENSG00000171747	198	0	0	93	64	40.76	-	-	-	A	39292707	G	A	39292707	2	1	582	1	0	0	0	0	0	0	0	1	8799	1194	42	4		4	LGALS4	19	39292707	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	32574397	39292707	19836276	70	52117										
CYP2S1	0	genome.wustl.edu	37	chr19	41707218	41707218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gctgtttgctgggacgatgaCggtcagcaccacggtcggct	15	11	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	41707218	41707218	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	missense	c.917	p.T306M	0.738	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	193	0	0	144	33	18.64	-	-	-	T	41707218	C	T	41707218	3	4	582	1	0	0	0	0	1	0	0	0	4205	536	19	1	939	1	CYP2S1	19	41707218	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	2414511	41707218	17421765	71	52118										
FCGRT	0	genome.wustl.edu	37	chr19	50017360	50017360	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ggatcaaggagaagctctttCtggaagctttcaaagctttg	11	7	4	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	50017360	50017360	C	T	SNP	FCGRT	ENST00000221466	human	ensembl	69_37n	1	known	silent	c.295	p.L99	0.002	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	FCGRT	HGNC	ENSG00000104870	108	0	0	86	13	13.13	-	-	-	T	50017360	C	T	50017360	2	4	582	1	0	0	0	0	0	0	0	1	5832	912	32	2		2	FCGRT	19	50017360	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	8310142	50017360	9111623	72	52119										
PLCG1	0	genome.wustl.edu	37	chr20	39793935	39793935	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gaggaggtgcctacatccatGatgtactctgagaacgacat	11	9	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	39793935	39793935	G	T	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.1437	p.M479I	0.774	superfamily_PLC-like_Pdiesterase_TIM-brl,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	148	0	0	129	24	15.69	-	-	-	T	39793935	G	T	39793935	3	4	582	1	0	0	0	0	1	0	0	0	12109	1290	45	2	1491	2	PLCG1	20	39793935	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		39793935	23231585	73	52120										
ZNF217	0	genome.wustl.edu	37	chr20	52198134	52198134	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccggctgcctcccgtccacaGacatggtgggcgactccgcg	13	17	0	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	52198134	52198134	G	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.1232	p.S411F	0.064	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	65	0	0	85	29	25.44	-	-	-	A	52198134	G	A	52198134	3	1	582	1	0	0	0	0	1	0	0	0	17868	942	33	2	1930	2	ZNF217	20	52198134	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	12404199	52198134	10827386	74	52121										
DNAJC5	0	genome.wustl.edu	37	chr20	62560669	62560669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tggttttggtttgcaggaagCttgccttgaaatatcacccc	10	9	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	62560669	62560669	C	T	SNP	DNAJC5	ENST00000360864	human	ensembl	69_37n	1	known	missense	c.112	p.L38F	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5	HGNC	ENSG00000101152	82	0	0	121	31	20.39	-	-	-	T	62560669	C	T	62560669	3	4	582	1	0	0	0	0	1	0	0	0	4685	797	28	4	118	4	DNAJC5	20	62560669	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	10362535	62560669	464851	75	52122										
LCA5L	0	genome.wustl.edu	37	chr21	40795105	40795105	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ctgggatttcctaagtagttGccttaaattttttacttcat	6	7	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	21	40795105	40795105	G	A	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	nonsense	c.634	p.Q212*	0.926	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	694	0	0	659	103	13.46	-	-	-	A	40795105	G	A	40795105	4	1	582	1	0	0	0	0	0	1	0	0	8711	1328	46	4	1402	4	LCA5L	21	40795105	Nonsense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		40795105	7334790	76	52123										
PI4KA	0	genome.wustl.edu	37	chr22	21096566	21096566	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	cagccactcccagcaggccaGggccgtctccatgccatgct	10	18	1	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	21096566	21096566	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	silent	c.3691	p.L1231	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	120	0	0	94	19	16.67	-	-	-	A	21096566	G	A	21096566	2	1	582	1	0	0	0	0	0	0	0	1	11947	991	35	4		4	PI4KA	22	21096566	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09		21096566	30208000	77	52124										
ASCC2	0	genome.wustl.edu	37	chr22	30197090	30197090	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	agcaggggtgtagggtctggTttcatttctctgggtggggg	19	5	3	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	30197090	30197090	T	C	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.1578	p.K526	0.991	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	253	0	0	274	42	13	-	-	-	C	30197090	T	C	30197090	2	2	582	1	0	0	0	0	0	0	0	1	1036	1722	60	5		5	ASCC2	22	30197090	Silent	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	9100524	30197090	21107476	78	52125										
EP300	0	genome.wustl.edu	37	chr22	41489026	41489026	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	aaaatggccgagaatgtggtGgaaccggggccgccttcagc	15	10	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	41489026	41489026	G	A	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	silent	c.18	p.V6	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	52	0	0	72	8	10	-	-	-	A	41489026	G	A	41489026	2	1	582	1	0	0	0	0	0	0	0	1	5185	1335	47	4		4	EP300	22	41489026	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	11291936	41489026	9815540	79	52126										
SREBF2	0	genome.wustl.edu	37	chr22	42271676	42271676	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	agggtcccaggctggcttctCtccctactccattgactctg	9	15	2	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	42271676	42271676	C	G	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	missense	c.1334	p.S445C	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	144	0	0	146	20	11.98	-	-	-	G	42271676	C	G	42271676	3	3	582	1	0	0	0	0	1	0	0	0	15233	913	32	2	1360	2	SREBF2	22	42271676	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	782650	42271676	9032890	80	52127										
CERK	0	genome.wustl.edu	37	chr22	47095261	47095263	+	In_Frame_Del	DEL	TGA	TGA	-													0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ccgtttcttctcactgtcctTgatgatgtccccgtagaagc							TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	47095261	47095263	TGA	-	DEL	CERK	ENST00000216264	human	ensembl	69_37n	-1	known	in_frame_del	c.892_890	p.I297in_frame_del	0.999:0.998:1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422	211	0	0	185	43	18.78	-	-	-	-	47095263	TGA	-	47095261	7	5	582	1	0	1	0	1	0	0	0	0	3296	1821	63	0	745	0	CERK	22	47095261	In_Frame_Del	DEL	TGA	TCGA-BH-A18U-01A-21D-A12B-09	4823585	47095261	4209305	81	52128										
GPR143	0	genome.wustl.edu	37	chrX	9714090	9714090	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tccctagtatttacctgcagTcactgtcttttggaacagga	8	10	2	0			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	9714090	9714090	T	A	SNP	GPR143	ENST00000380929	human	ensembl	69_37n	-1	known	missense	c.712	p.T238S	0.002	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850	171	0	0	97	15	13.27	-	-	-	A	9714090	T	A	9714090	3	1	582	1	0	0	0	0	1	0	0	0	6701	1667	58	5	582	5	GPR143	23	9714090	Missense_Mutation	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09		9714090	145556470	82	52129										
USP9X	0	genome.wustl.edu	37	chrX	41048627	41048627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tgtgaagcattggaagtgatGaccttatgttttgccttgat	11	5	0	4			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	41048627	41048627	G	A	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.3876	p.M1292I	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	685	0	0	694	82	10.55	-	-	-	A	41048627	G	A	41048627	3	1	582	1	0	0	0	0	1	0	0	0	17187	1290	45	2	3974	2	USP9X	23	41048627	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	31334537	41048627	114221933	83	52130										
CLCN5	0	genome.wustl.edu	37	chrX	49853534	49853534	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gcaatggttggggctgcagcCtgcttaggtgagtagtgttt	16	6	0	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	49853534	49853534	C	G	SNP	CLCN5	ENST00000376088	human	ensembl	69_37n	1	known	silent	c.1737	p.A579	0.999	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365	202	0	0	188	26	12.15	-	-	-	G	49853534	C	G	49853534	2	3	582	1	0	0	0	0	0	0	0	1	3496	668	24	4		4	CLCN5	23	49853534	Silent	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	8804907	49853534	105417026	84	52131										
SPANXN5	0	genome.wustl.edu	37	chrX	52825543	52825543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	ttctctcaggactggtcattCtccagttgatttgaatgtat	8	8	4	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	52825543	52825543	C	G	SNP	SPANXN5	ENST00000375511	human	ensembl	69_37n	-1	known	missense	c.204	p.E68D	0.140	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN5	HGNC	ENSG00000204363	1165	0	0	803	143	15.12	-	-	-	G	52825543	C	G	52825543	3	3	582	1	0	0	0	0	1	0	0	0	15085	912	32	2	18	2	SPANXN5	23	52825543	Missense_Mutation	SNP	C	TCGA-BH-A18U-01A-21D-A12B-09	2972009	52825543	102445017	85	52132										
TSPYL2	0	genome.wustl.edu	37	chrX	53113974	53113974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tatctccatgggctacaaaaTgaagctgtacttccagacta	7	10	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	53113974	53113974	T	C	SNP	TSPYL2	ENST00000375442	human	ensembl	69_37n	1	known	missense	c.923	p.M308T	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	295	0	0	232	30	11.32	-	-	-	C	53113974	T	C	53113974	3	2	582	1	0	0	0	0	1	0	0	0	16756	1464	51	5	933	5	TSPYL2	23	53113974	Missense_Mutation	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	288431	53113974	102156586	86	52133										
ATRX	0	genome.wustl.edu	37	chrX	76938781	76938781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gtgtagtctttacacgtgggGatcttcgaagatcagattcc	11	8	3	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	76938781	76938781	G	A	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.1967	p.S656F	0.998	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	171	0	0	126	64	33.51	-	-	-	A	76938781	G	A	76938781	3	1	582	1	0	0	0	0	1	0	0	0	1212	1174	41	2	5619	2	ATRX	23	76938781	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	23824807	76938781	78331779	87	52134										
PCDH11X	0	genome.wustl.edu	37	chrX	91134233	91134233	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	tctgactgtggctatccagtGacgaccttcgaggtacctgt	11	11	1	2			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	91134233	91134233	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	silent	c.2994	p.V998	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	438	0	0	343	123	26.39	-	-	-	T	91134233	G	T	91134233	2	4	582	1	0	0	0	0	0	0	0	1	11581	1277	45	2		2	PCDH11X	23	91134233	Silent	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	14195452	91134233	64136327	88	52135										
RGAG1	0	genome.wustl.edu	37	chrX	109695584	109695584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	agcaatgtccaccccactaaTgacagcccaaacctctggat	6	15	1	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	109695584	109695584	T	C	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.1739	p.M580T	0.093	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	216	1	0.46	109	74	40.22	-	-	-	C	109695584	T	C	109695584	3	2	582	1	0	0	0	0	1	0	0	0	13357	1464	51	5	1741	5	RGAG1	23	109695584	Missense_Mutation	SNP	T	TCGA-BH-A18U-01A-21D-A12B-09	18561351	109695584	45574976	89	52136										
FLNA	0	genome.wustl.edu	37	chrX	153580968	153580968	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.266666666666667	24	0.000152324799354037	2.47355686138956	4.25142585551331	1.90463878326996	0.411664362715233	1	14	gactaccaacgttggccactGaaggagcccgacgcctgcgg	13	14	0	1			TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	153580968	153580968	G	A	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.6455	p.S2152L	0.997	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	65	0	0	50	9	15.25	-	-	-	A	153580968	G	A	153580968	3	1	582	1	0	0	0	0	1	0	0	0	5979	1294	45	2	1524	2	FLNA	23	153580968	Missense_Mutation	SNP	G	TCGA-BH-A18U-01A-21D-A12B-09	43885384	153580968	1689592	90	52137										
ACAP3	0	genome.wustl.edu	37	chr1	1229567	1229567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttgcagcaggaactcacagaCgatcaaggagccctggggag	14	10	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	1229567	1229567	C	T	SNP	ACAP3	ENST00000353662	human	ensembl	69_37n	-1	known	missense	c.1927	p.V643I	0.713	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ACAP3	HGNC	ENSG00000131584	33	0	0	15	19	55.88	-	-	-	T	1229567	C	T	1229567	3	4	583	1	0	0	0	0	1	0	0	0	120	536	19	1	364	1	ACAP3	1	1229567	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		1229567	248021054	1	52138										
GPR153	0	genome.wustl.edu	37	chr1	6311508	6311508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggaacacaggcagcagcaggGcctgggccacggagcaccac	15	14	0	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	6311508	6311508	G	C	SNP	GPR153	ENST00000377893	human	ensembl	69_37n	-1	known	missense	c.869	p.A290G	1.000	pfam_7TM_GPCR_Rhodpsn,prints_GPCR_153/162	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_153,prints_GPCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	32	0	0	4	14	77.78	-	-	-	C	6311508	G	C	6311508	3	2	583	1	0	0	0	0	1	0	0	0	6709	1203	42	4	972	4	GPR153	1	6311508	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	5081941	6311508	242939113	2	52139										
COL16A1	0	genome.wustl.edu	37	chr1	32131199	32131199	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctcaccggtgggcccggaaaGcctggctggccttgaaatcc	13	14	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	32131199	32131199	G	T	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	silent	c.3477	p.G1159	0.998	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	143	0	0	58	43	42.57	-	-	-	T	32131199	G	T	32131199	2	4	583	1	0	0	0	0	0	0	0	1	3703	958	34	4		4	COL16A1	1	32131199	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	25819691	32131199	217119422	3	52140										
FNDC5	0	genome.wustl.edu	37	chr1	33333876	33333876	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gggctctggccctgaatggaGatggcctgcacgtggactat	15	10	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	33333876	33333876	G	A	SNP	FNDC5	ENST00000373471	human	ensembl	69_37n	-1	known	silent	c.99	p.I33	1.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	FNDC5	HGNC	ENSG00000160097	152	0	0	56	52	48.15	-	-	-	A	33333876	G	A	33333876	2	1	583	1	0	0	0	0	0	0	0	1	6018	932	33	2		2	FNDC5	1	33333876	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1202677	33333876	215916745	4	52141										
PTPRF	0	genome.wustl.edu	37	chr1	44084968	44084968	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtgtcctgcagcgcgggcgtGggccgcaccggctgcttcat	16	14	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	44084968	44084968	G	A	SNP	PTPRF	ENST00000429895	human	ensembl	69_37n	1	novel	nonsense	c.3593	p.W1198*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTPRF	HGNC	ENSG00000142949	26	0	0	8	9	52.94	-	-	-	A	44084968	G	A	44084968	4	1	583	1	0	0	0	0	0	1	0	0	12884	1335	47	4	4758	4	PTPRF	1	44084968	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	10751092	44084968	205165653	5	52142										
CPT2	0	genome.wustl.edu	37	chr1	53675880	53675880	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gagccagaagtgttccacttGaaccctgcaaaaagtgacac	9	11	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	53675880	53675880	G	C	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	1	known	missense	c.534	p.L178F	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	219	0	0	149	30	16.76	-	-	-	C	53675880	G	C	53675880	3	2	583	1	0	0	0	0	1	0	0	0	3864	1281	45	2	548	2	CPT2	1	53675880	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	9590912	53675880	195574741	6	52143										
SSX2IP	0	genome.wustl.edu	37	chr1	85130215	85130215	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tgagtagctcgacttgcaatGatattttgtaatttttgcac	8	6	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	85130215	85130215	G	A	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	silent	c.558	p.I186	0.982	pfam_Afadin/alpha-actinin-bd	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	502	3	0.59	205	206	50.12	-	-	-	A	85130215	G	A	85130215	2	1	583	1	0	0	0	0	0	0	0	1	15295	1280	45	2		2	SSX2IP	1	85130215	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	31454335	85130215	164120406	7	52144										
FLG	0	genome.wustl.edu	37	chr1	152279371	152279371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	caatgcctgagtgtctggagCtgtctgctgactgctggtgg	15	9	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	152279371	152279371	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7991	p.S2664N	0.111	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	23	0	0	13	32	71.11	-	-	-	T	152279371	C	T	152279371	3	4	583	1	0	0	0	0	1	0	0	0	5968	797	28	4	4198	4	FLG	1	152279371	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	67149156	152279371	96971250	8	52145										
FCER1A	0	genome.wustl.edu	37	chr1	159273955	159273955	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	taatgagagtgaacctgtgtAcctggaagtcttcagtggta	12	6	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	159273955	159273955	A	T	SNP	FCER1A	ENST00000368115	human	ensembl	69_37n	1	known	missense	c.314	p.Y105F	0.001	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCER1A	HGNC	ENSG00000179639	148	0	0	150	180	54.55	-	-	-	T	159273955	A	T	159273955	3	4	583	1	0	0	0	0	1	0	0	0	5820	391	14	5	324	5	FCER1A	1	159273955	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	6994584	159273955	89976666	9	52146										
SLAMF6	0	genome.wustl.edu	37	chr1	160461134	160461134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gagctcacaggtcatattctGaaatagctgactgtgattgg	11	7	3	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	160461134	160461134	G	C	SNP	SLAMF6	ENST00000368057	human	ensembl	69_37n	-1	known	missense	c.427	p.Q143E	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SLAMF6	HGNC	ENSG00000162739	218	0	0	509	63	11.01	-	-	-	C	160461134	G	C	160461134	3	2	583	1	0	0	0	0	1	0	0	0	14457	1299	45	2	595	2	SLAMF6	1	160461134	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1187179	160461134	88789487	10	52147										
GPA33	0	genome.wustl.edu	37	chr1	167038307	167038307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tcagcattgttggatatgctGacgcgattcttataaagctc	9	8	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	167038307	167038307	G	A	SNP	GPA33	ENST00000367868	human	ensembl	69_37n	-1	known	silent	c.267	p.V89	0.009	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	GPA33	HGNC	ENSG00000143167	400	0	0	407	60	12.79	-	-	-	A	167038307	G	A	167038307	2	1	583	1	0	0	0	0	0	0	0	1	6636	1277	45	2		2	GPA33	1	167038307	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	6577173	167038307	82212314	11	52148										
TIPRL	0	genome.wustl.edu	37	chr1	168160639	168160639	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acagatcatatagatacagaAaaattgaaagccagagaaca	7	6	1	5			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	168160639	168160639	A	G	SNP	TIPRL	ENST00000367833	human	ensembl	69_37n	1	known	silent	c.417	p.E139	1.000	pfam_TIP41-like	pfam_TIP41-like	-	no_errors	TIPRL	HGNC	ENSG00000143155	90	0	0	176	30	14.56	-	-	-	G	168160639	A	G	168160639	2	3	583	1	0	0	0	0	0	0	0	1	16021	11	1	5		5	TIPRL	1	168160639	Silent	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	1122332	168160639	81089982	12	52149										
F5	0	genome.wustl.edu	37	chr1	169509636	169509636	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	taccatgctgcaatgttgtcAggatctctggaggagttgat	12	7	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	169509636	169509636	A	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	silent	c.4707	p.P1569	0.896	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	430	2	0.46	569	94	14.18	-	-	-	G	169509636	A	G	169509636	2	3	583	1	0	0	0	0	0	0	0	1	5385	175	7	5		5	F5	1	169509636	Silent	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	1348997	169509636	79740985	13	52150										
ADORA1	0	genome.wustl.edu	37	chr1	203134380	203134380	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tcctcacactctgccctcctCtcccccaggtacaagatggt	6	18	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	203134380	203134380	C	T	SNP	ADORA1	ENST00000464019	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADORA1	HGNC	ENSG00000163485	115	0	0	68	13	16.05	-	-	-	T	203134380	C	T	203134380	1	4	583	0	1	0	0	0	0	0	0	0	326	928	32	2		2	ADORA1	1	203134380	RNA	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	33624744	203134380	46116241	14	52151										
SCCPDH	0	genome.wustl.edu	37	chr1	246890259	246890259	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttgctaatccagcctcgcttGatgaaatggctaaacaggca	9	10	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	1	246890259	246890259	G	C	SNP	SCCPDH	ENST00000366510	human	ensembl	69_37n	1	known	missense	c.256	p.D86H	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653	512	0	0	509	105	17.07	-	-	-	C	246890259	G	C	246890259	3	2	583	1	0	0	0	0	1	0	0	0	13972	1290	45	2	262	2	SCCPDH	1	246890259	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	43755879	246890259	2360362	15	52152										
APOB	0	genome.wustl.edu	37	chr2	21233256	21233256	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	attaaagttgattttggcatCatctaatgcaatttgtatat	6	4	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	21233256	21233256	C	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.6484	p.D2162Y	0.883	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	297	1	0.34	312	161	34.04	-	-	-	A	21233256	C	A	21233256	3	1	583	1	0	0	0	0	1	0	0	0	787	826	29	2	7223	2	APOB	2	21233256	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		21233256	221966117	16	52153										
FAM161A	0	genome.wustl.edu	37	chr2	62067332	62067332	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggatcctcttcttgttttttGagcgctttatgtaccatttc	7	9	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	62067332	62067332	G	C	SNP	FAM161A	ENST00000418113	human	ensembl	69_37n	-1	known	nonsense	c.794	p.S265*	0.859	pfam_UPF0564	pfam_UPF0564	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM161A	HGNC	ENSG00000170264	598	0	0	474	320	39.22	-	-	-	C	62067332	G	C	62067332	4	2	583	1	0	0	0	0	0	1	0	0	5512	1277	45	2	1191	2	FAM161A	2	62067332	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	40834076	62067332	181132041	17	52154										
SLC9A2	0	genome.wustl.edu	37	chr2	103274408	103274408	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cctgtggctgtgcttgctgtCtttgagaacattcacgtcaa	10	10	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	103274408	103274408	C	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	silent	c.675	p.V225	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	310	0	0	207	120	36.7	-	-	-	G	103274408	C	G	103274408	2	3	583	1	0	0	0	0	0	0	0	1	14801	900	32	2		2	SLC9A2	2	103274408	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	41207076	103274408	139924965	18	52155										
TFCP2L1	0	genome.wustl.edu	37	chr2	121981961	121981961	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtggtagccatcattgctctCagctgcaagagagaaacact	10	10	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	121981961	121981961	C	G	SNP	TFCP2L1	ENST00000263707	human	ensembl	69_37n	-1	known	missense	c.1396	p.E466Q	0.998	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112	177	0	0	139	27	16.17	-	-	-	G	121981961	C	G	121981961	3	3	583	1	0	0	0	0	1	0	0	0	15891	835	29	2	47	2	TFCP2L1	2	121981961	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	18707553	121981961	121217412	19	52156										
CNTNAP5	0	genome.wustl.edu	37	chr2	125204421	125204421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tggcactcggtcctcattgaGcgggtgggcaagcaggtgaa	16	9	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	125204421	125204421	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	silent	c.825	p.E275	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	137	0	0	81	21	20.59	-	-	-	A	125204421	G	A	125204421	2	1	583	1	0	0	0	0	0	0	0	1	3680	962	34	4		4	CNTNAP5	2	125204421	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	3222460	125204421	117994952	20	52157										
PLA2R1	0	genome.wustl.edu	37	chr2	160840563	160840563	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tctccatgttcttttcatcaGaactttttcactatgaaata	3	9	5	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	160840563	160840563	G	C	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.2059	p.L687V	0.518	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	116	0	0	82	63	43.45	-	-	-	C	160840563	G	C	160840563	3	2	583	1	0	0	0	0	1	0	0	0	12084	933	33	2	2412	2	PLA2R1	2	160840563	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	35636142	160840563	82358810	21	52158										
XIRP2	0	genome.wustl.edu	37	chr2	168100303	168100303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaatatccatggaagaaaatGtcaaaggtggggtgagtaag	14	3	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	168100303	168100303	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.2401	p.V801I	0.005	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	165	0	0	137	59	30.1	-	-	-	A	168100303	G	A	168100303	3	1	583	1	0	0	0	0	1	0	0	0	17527	1377	48	4	2431	4	XIRP2	2	168100303	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	7259740	168100303	75099070	22	52159										
LRP2	0	genome.wustl.edu	37	chr2	170027091	170027091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttcatctgagttgtccccacAgtcgttgtaatggtcacaga	9	10	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	170027091	170027091	A	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.11350	p.C3784R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	226	0	0	172	74	30.08	-	-	-	G	170027091	A	G	170027091	3	3	583	1	0	0	0	0	1	0	0	0	9022	188	7	5	2701	5	LRP2	2	170027091	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	1926788	170027091	73172282	23	52160										
KBTBD10	0	genome.wustl.edu	37	chr2	170366886	170366886	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagaagcagtatttgaggcaGtgatgaaatgggtgcgaaca	14	4	0	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	170366886	170366886	G	C	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	missense	c.598	p.V200L	0.982	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	414	0	0	520	174	25.07	-	-	-	C	170366886	G	C	170366886	3	2	583	1	0	0	0	0	1	0	0	0	8044	1029	36	4	600	4	KBTBD10	2	170366886	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	339795	170366886	72832487	24	52161										
DNAH7	0	genome.wustl.edu	37	chr2	196740462	196740462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aatcatggaacaatcttttaGatcataccagttccagtggt	7	8	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	196740462	196740462	G	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.6223	p.L2075V	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	178	0	0	148	86	36.75	-	-	-	C	196740462	G	C	196740462	3	2	583	1	0	0	0	0	1	0	0	0	4641	933	33	2	5963	2	DNAH7	2	196740462	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	26373576	196740462	46458911	25	52162										
MAP2	0	genome.wustl.edu	37	chr2	210574870	210574870	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	actcctccaaaatctcctgcGactcccaagcagcttcggct	6	17	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	210574870	210574870	G	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	silent	c.4965	p.A1655	0.085	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	342	1	0.29	180	110	37.93	-	-	-	A	210574870	G	A	210574870	2	1	583	1	0	0	0	0	0	0	0	1	9306	1045	37	1		1	MAP2	2	210574870	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	13834408	210574870	32624503	26	52163										
ABCA12	0	genome.wustl.edu	37	chr2	215815716	215815716	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	caagtcaaattcagctgcacCactctcaactcttaatctct	3	14	5	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	215815716	215815716	C	G	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.6739	p.G2247R	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	910	1	0.11	597	319	34.75	-	-	-	G	215815716	C	G	215815716	3	3	583	1	0	0	0	0	1	0	0	0	30	594	21	4	1084	4	ABCA12	2	215815716	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	5240846	215815716	27383657	27	52164										
HTR2B	0	genome.wustl.edu	37	chr2	231988413	231988413	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaagagataacgtgaacaaaGgtgctctgcaaaatgtgctc	11	7	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	2	231988413	231988413	G	C	SNP	HTR2B	ENST00000258400	human	ensembl	69_37n	-1	known	silent	c.66	p.T22	0.028	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2B_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2B	HGNC	ENSG00000135914	355	1	0.28	362	222	38.01	-	-	-	C	231988413	G	C	231988413	2	2	583	1	0	0	0	0	0	0	0	1	7496	987	35	4		4	HTR2B	2	231988413	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	16172697	231988413	11210960	28	52165										
ATP2B2	0	genome.wustl.edu	37	chr3	10430045	10430045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctgagagttcacacccacagCagtcaccaacatccgtcctg	7	16	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	10430045	10430045	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.823	p.A275T	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	482	0	0	120	282	70.15	-	-	-	T	10430045	C	T	10430045	3	4	583	1	0	0	0	0	1	0	0	0	1144	710	25	4	2980	4	ATP2B2	3	10430045	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		10430045	187592385	29	52166										
PARP3	0	genome.wustl.edu	37	chr3	51978147	51978147	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccctgaaccagaccaacatcGagaacaacaacaacaagttc	5	14	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	51978147	51978147	G	C	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	missense	c.247	p.E83Q	0.528	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	180	1	0.55	36	80	68.38	-	-	-	C	51978147	G	C	51978147	3	2	583	1	0	0	0	0	1	0	0	0	11535	1059	37	3	257	3	PARP3	3	51978147	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	41548102	51978147	146044283	30	52167										
NT5DC2	0	genome.wustl.edu	37	chr3	52563265	52563265	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tagtcgtagtcaaagccgtaGacctcaacgtcacgcaggct	10	12	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	52563265	52563265	G	T	SNP	NT5DC2	ENST00000489316	human	ensembl	69_37n	-1	novel	missense	c.112	p.L38I	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5DC2	HGNC	ENSG00000168268	548	0	0	303	41	11.85	-	-	-	T	52563265	G	T	52563265	3	4	583	1	0	0	0	0	1	0	0	0	10764	929	33	2	1407	2	NT5DC2	3	52563265	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	585118	52563265	145459165	31	52168										
PPP4R2	0	genome.wustl.edu	37	chr3	73114577	73114577	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tgacatcaagagaaatgatcCcagaaagaaaaaatcaagaa	7	6	2	6			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	73114577	73114577	C	G	SNP	PPP4R2	ENST00000356692	human	ensembl	69_37n	1	known	missense	c.958	p.P320A	0.967	NULL	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605	36	0	0	9	37	78.72	-	-	-	G	73114577	C	G	73114577	3	3	583	1	0	0	0	0	1	0	0	0	12481	623	22	4	992	4	PPP4R2	3	73114577	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	20551312	73114577	124907853	32	52169										
ALCAM	0	genome.wustl.edu	37	chr3	105260577	105260577	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttccctgatagacaaaaaaaGcatgattgcttcaacagcta	6	9	1	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	105260577	105260577	G	C	SNP	ALCAM	ENST00000306107	human	ensembl	69_37n	1	known	missense	c.959	p.S320T	0.998	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ALCAM	HGNC	ENSG00000170017	285	0	0	118	175	59.73	-	-	-	C	105260577	G	C	105260577	3	2	583	1	0	0	0	0	1	0	0	0	487	971	34	4	989	4	ALCAM	3	105260577	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	32146000	105260577	92761853	33	52170										
CBLB	0	genome.wustl.edu	37	chr3	105397410	105397410	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agggagggcatcaaaagcatCttcacctgcatttaaagaaa	9	8	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	105397410	105397410	C	G	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.2434	p.D812H	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	321	0	0	104	202	66.01	-	-	-	G	105397410	C	G	105397410	3	3	583	1	0	0	0	0	1	0	0	0	2726	913	32	2	526	2	CBLB	3	105397410	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	136833	105397410	92625020	34	52171										
UMPS	0	genome.wustl.edu	37	chr3	124456915	124456915	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gagagctgttgcagctagcaGatgctttaggacctagtatc	12	8	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	124456915	124456915	G	C	SNP	UMPS	ENST00000232607	human	ensembl	69_37n	1	known	missense	c.811	p.D271H	0.768	pfam_OMPdeCOase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase	pfam_OMPdeCOase_dom,pfam_PRibTrfase,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_clade-1	-	no_errors	UMPS	HGNC	ENSG00000114491	316	0	0	272	111	28.98	-	-	-	C	124456915	G	C	124456915	3	2	583	1	0	0	0	0	1	0	0	0	17078	942	33	2	821	2	UMPS	3	124456915	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	19059505	124456915	73565515	35	52172										
MUC13	0	genome.wustl.edu	37	chr3	124632415	124632415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggtgaaacacttaccaacgcAgaaagggctctgtgggttag	13	8	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	124632415	124632415	A	C	SNP	MUC13	ENST00000311075	human	ensembl	69_37n	-1	known	missense	c.1075	p.C359G	0.129	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_SEA,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	MUC13	HGNC	ENSG00000173702	155	0	0	120	64	34.78	-	-	-	C	124632415	A	C	124632415	3	2	583	1	0	0	0	0	1	0	0	0	10043	188	7	5	480	5	MUC13	3	124632415	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	175500	124632415	73390015	36	52173										
DNAJC13	0	genome.wustl.edu	37	chr3	132247140	132247140	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gctcagattgttaaagctctCaaggcaatgactcgaagttt	9	8	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	132247140	132247140	C	G	SNP	DNAJC13	ENST00000509279	human	ensembl	69_37n	1	known	nonsense	c.95	p.S32*	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAJC13	HGNC	ENSG00000138246	239	0	0	153	159	50.96	-	-	-	G	132247140	C	G	132247140	4	3	583	1	0	0	0	0	0	1	0	0	4667	813	29	2	6699	2	DNAJC13	3	132247140	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	7614725	132247140	65775290	37	52174										
MRPS22	0	genome.wustl.edu	37	chr3	139074558	139074558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccaacttggtccagctgtatCacgtgctccatccagatggc	9	14	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	139074558	139074558	C	G	SNP	MRPS22	ENST00000310776	human	ensembl	69_37n	1	known	missense	c.913	p.H305D	1.000	pfam_Ribosomal_S22_mit	pfam_Ribosomal_S22_mit	-	no_errors	MRPS22	HGNC	ENSG00000175110	268	0	0	241	145	37.56	-	-	-	G	139074558	C	G	139074558	3	3	583	1	0	0	0	0	1	0	0	0	9905	826	29	2	939	2	MRPS22	3	139074558	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	6827418	139074558	58947872	38	52175										
B3GALNT1	0	genome.wustl.edu	37	chr3	160804030	160804030	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttcattacgtacttggcattGgggcaaaactcagttaccca	8	10	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	160804030	160804030	G	T	SNP	B3GALNT1	ENST00000320474	human	ensembl	69_37n	-1	known	silent	c.513	p.P171	0.168	pfam_Glyco_trans_31,pfam_Fringe-like	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GALNT1	HGNC	ENSG00000169255	147	0	0	184	81	30.57	-	-	-	T	160804030	G	T	160804030	2	4	583	1	0	0	0	0	0	0	0	1	1249	1335	47	4		4	B3GALNT1	3	160804030	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	21729472	160804030	37218400	39	52176										
LRRC31	0	genome.wustl.edu	37	chr3	169565908	169565908	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gggaacaagtagatacacacCcaggagagccacatcctctg	10	12	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	169565908	169565908	C	A	SNP	LRRC31	ENST00000523069	human	ensembl	69_37n	-1	putative	nonsense	c.1327	p.E443*	0.992	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248	88	0	0	87	32	26.89	-	-	-	A	169565908	C	A	169565908	4	1	583	1	0	0	0	0	0	1	0	0	9052	637	22	4	339	4	LRRC31	3	169565908	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	8761878	169565908	28456522	40	52177										
SEC62	0	genome.wustl.edu	37	chr3	169684617	169684617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcggagcggccaacatggcgGaacgcaggagacacaagaag	16	10	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	169684617	169684617	G	A	SNP	SEC62	ENST00000337002	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	1.000	NULL	pfam_Sec62,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SEC62	HGNC	ENSG00000008952	56	0	0	35	12	25.53	-	-	-	A	169684617	G	A	169684617	3	1	583	1	0	0	0	0	1	0	0	0	14092	1175	41	2	9	2	SEC62	3	169684617	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	118709	169684617	28337813	41	52178										
GPR160	0	genome.wustl.edu	37	chr3	169802102	169802102	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttgcattatccagttttcctGacagcttgtatagattattg	7	7	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	169802102	169802102	G	C	SNP	GPR160	ENST00000355897	human	ensembl	69_37n	1	known	silent	c.342	p.L114	0.002	pfscan_GPCR_Rhodpsn_supfam	pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR160	HGNC	ENSG00000173890	231	1	0.43	359	105	22.63	-	-	-	C	169802102	G	C	169802102	2	2	583	1	0	0	0	0	0	0	0	1	6714	1277	45	2		2	GPR160	3	169802102	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	117485	169802102	28220328	42	52179										
ECE2	0	genome.wustl.edu	37	chr3	184008058	184008058	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cacagtacgaaatttctgaaGattctttcttccaaaacatg	5	9	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	184008058	184008058	G	T	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	missense	c.1921	p.D641Y	1.000	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	275	1	0.36	286	137	32.39	-	-	-	T	184008058	G	T	184008058	3	4	583	1	0	0	0	0	1	0	0	0	4925	942	33	2	2539	2	ECE2	3	184008058	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	14205956	184008058	14014372	43	52180										
KIAA0226	0	genome.wustl.edu	37	chr3	197402332	197402332	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atggagctcaaagggaaagaTgatgtcatcctcattctgac	10	8	4	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	3	197402332	197402332	T	C	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.2701	p.I901V	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	194	0	0	186	53	22.18	-	-	-	C	197402332	T	C	197402332	3	2	583	1	0	0	0	0	1	0	0	0	8214	1464	51	5	225	5	KIAA0226	3	197402332	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	13394274	197402332	620098	44	52181										
UGT2B10	0	genome.wustl.edu	37	chr4	69682121	69682121	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	attagaaacttctgtaaagaTgtagtttcaaataagaaact	6	4	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	69682121	69682121	T	A	SNP	UGT2B10	ENST00000265403	human	ensembl	69_37n	1	known	missense	c.384	p.D128E	0.002	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B10	HGNC	ENSG00000109181	287	0	0	125	178	58.75	-	-	-	A	69682121	T	A	69682121	3	1	583	1	0	0	0	0	1	0	0	0	17053	1461	51	5	386	5	UGT2B10	4	69682121	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09		69682121	121472155	45	52182										
FRAS1	0	genome.wustl.edu	37	chr4	79188077	79188077	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagcaggcctgcctgcccctGagatgcggaaaggtatttga	13	10	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	79188077	79188077	G	A	SNP	FRAS1	ENST00000508900	human	ensembl	69_37n	1	putative	missense	c.304	p.E102K	0.491	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,superfamily_Growth_fac_rcpt,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,pfscan_VWF_C	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	238	1	0.42	70	74	51.39	-	-	-	A	79188077	G	A	79188077	3	1	583	1	0	0	0	0	1	0	0	0	6090	1277	45	2	807	2	FRAS1	4	79188077	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	9505956	79188077	111966199	46	52183										
UNC5C	0	genome.wustl.edu	37	chr4	96222841	96222841	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcaccagtaatcttcaggtcCaaagagttcttccacttgct	7	12	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	96222841	96222841	C	G	SNP	UNC5C	ENST00000453304	human	ensembl	69_37n	-1	known	missense	c.406	p.G136R	1.000	NULL	pfam_ZU5,pfam_Death,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5C	HGNC	ENSG00000182168	173	0	0	112	93	45.37	-	-	-	G	96222841	C	G	96222841	3	3	583	1	0	0	0	0	1	0	0	0	17090	603	21	4	2445	4	UNC5C	4	96222841	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	17034764	96222841	94931435	47	52184										
BANK1	0	genome.wustl.edu	37	chr4	102946423	102946423	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggcagagtgcagatggagctGaggcaaatgaaatggaaggg	18	4	0	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	102946423	102946423	G	A	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	missense	c.1351	p.E451K	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	529	0	0	370	245	39.84	-	-	-	A	102946423	G	A	102946423	3	1	583	1	0	0	0	0	1	0	0	0	1313	1291	45	2	1385	2	BANK1	4	102946423	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	6723582	102946423	88207853	48	52185										
DCHS2	0	genome.wustl.edu	37	chr4	155156862	155156862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccaagggtgttccttcagagGagaaagacacattcacaaaa	9	9	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	155156862	155156862	G	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.7577	p.S2526C	0.003	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	136	0	0	77	112	59.26	-	-	-	C	155156862	G	C	155156862	3	2	583	1	0	0	0	0	1	0	0	0	4319	1174	41	2	1177	2	DCHS2	4	155156862	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	52210439	155156862	35997414	49	52186										
FGA	0	genome.wustl.edu	37	chr4	155510695	155510695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctccttcagctagaaagtcaCcttcaccactatctgcagtc	5	15	4	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	155510695	155510695	C	A	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.74	p.G25V	0.081	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	266	0	0	188	214	53.1	-	-	-	A	155510695	C	A	155510695	3	1	583	1	0	0	0	0	1	0	0	0	5876	507	18	4	2590	4	FGA	4	155510695	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	353833	155510695	35643581	50	52187										
NPY2R	0	genome.wustl.edu	37	chr4	156135095	156135095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtggacctgtactgaaaatgGgtccaataggtgcagaggct	14	7	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	4	156135095	156135095	G	C	SNP	NPY2R	ENST00000329476	human	ensembl	69_37n	1	known	missense	c.4	p.G2R	1.000	prints_NPY2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_NPY2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NPY2R	HGNC	ENSG00000185149	317	0	0	222	217	49.43	-	-	-	C	156135095	G	C	156135095	3	2	583	1	0	0	0	0	1	0	0	0	10682	1232	43	4	6	4	NPY2R	4	156135095	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	624400	156135095	35019181	51	52188										
BRD9	0	genome.wustl.edu	37	chr5	870670	870670	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tccagaacagagctgctgctGtctcctagggtgtccccaac	10	14	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	870670	870670	G	A	SNP	BRD9	ENST00000523139	human	ensembl	69_37n	-1	known	nonsense	c.163	p.Q55*	0.000	pfam_DUF3512	pfam_DUF3512	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRD9	HGNC	ENSG00000028310	218	0	0	229	36	13.58	-	-	-	A	870670	G	A	870670	4	1	583	1	0	0	0	0	0	1	0	0	1515	1368	48	4	362	4	BRD9	5	870670	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		870670	180044590	52	52189										
ADCY2	0	genome.wustl.edu	37	chr5	7820754	7820754	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gatatctggggcaacactgtCaatgtggccagtaggatgga	14	7	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	7820754	7820754	C	G	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.3075	p.V1025	0.913	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	346	0	0	374	111	22.84	-	-	-	G	7820754	C	G	7820754	2	3	583	1	0	0	0	0	0	0	0	1	294	813	29	2		2	ADCY2	5	7820754	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	6950084	7820754	173094506	53	52190										
CDH12	0	genome.wustl.edu	37	chr5	21975200	21975200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	attttgatttgcctactcacCcacaggagacatttctggaa	7	10	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	21975200	21975200	C	T	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.526	p.G176S	1.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	277	0	0	410	48	10.48	-	-	-	T	21975200	C	T	21975200	3	4	583	1	0	0	0	0	1	0	0	0	3127	637	22	4	1898	4	CDH12	5	21975200	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	14154446	21975200	158940060	54	52191										
PRKAA1	0	genome.wustl.edu	37	chr5	40767578	40767578	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gctttattacctgatatcttTgattgtggccctcttcatgg	8	9	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	40767578	40767578	T	G	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	missense	c.856	p.K286Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	263	0	0	165	126	43.3	-	-	-	G	40767578	T	G	40767578	3	3	583	1	0	0	0	0	1	0	0	0	12574	1821	63	5	884	5	PRKAA1	5	40767578	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	18792378	40767578	140147682	55	52192										
PARP8	0	genome.wustl.edu	37	chr5	50128622	50128622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccgatgttttcagggatgaaCaagaaacagaaggtgtcagc	12	7	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	50128622	50128622	C	G	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	missense	c.2241	p.N747K	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	319	0	0	174	129	42.02	-	-	-	G	50128622	C	G	50128622	3	3	583	1	0	0	0	0	1	0	0	0	11538	477	17	4	2331	4	PARP8	5	50128622	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	9361044	50128622	130786638	56	52193										
CDC20B	0	genome.wustl.edu	37	chr5	54429340	54429340	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agatggaaggattcatctctGactccatctttgcagcctac	8	11	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	54429340	54429340	G	C	SNP	CDC20B	ENST00000296733	human	ensembl	69_37n	-1	known	silent	c.597	p.V199	0.221	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287	258	0	0	105	115	52.27	-	-	-	C	54429340	G	C	54429340	2	2	583	1	0	0	0	0	0	0	0	1	3089	1277	45	2		2	CDC20B	5	54429340	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	4300718	54429340	126485920	57	52194										
SKIV2L2	0	genome.wustl.edu	37	chr5	54696232	54696232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tggaaactgtgtatacgcttTgtgaaaaaaaagcacaggta	10	5	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	54696232	54696232	T	C	SNP	SKIV2L2	ENST00000230640	human	ensembl	69_37n	1	known	missense	c.2464	p.C822R	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	132	0	0	46	81	63.78	-	-	-	C	54696232	T	C	54696232	3	2	583	1	0	0	0	0	1	0	0	0	14449	1812	63	5	2546	5	SKIV2L2	5	54696232	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	266892	54696232	126219028	58	52195										
MSH3	0	genome.wustl.edu	37	chr5	80071554	80071554	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tctgctgtatcttgtataccAactgattgggtaaaggttgg	11	6	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	80071554	80071554	A	T	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	silent	c.2295	p.P765	0.994	pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	388	1	0.26	176	180	50.42	-	-	-	T	80071554	A	T	80071554	2	4	583	1	0	0	0	0	0	0	0	1	9943	117	5	5		5	MSH3	5	80071554	Silent	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	25375322	80071554	100843706	59	52196										
ADAMTS19	0	genome.wustl.edu	37	chr5	128797410	128797410	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cggagctgtgctgcggcaccCtggctcgctggcttctttca	13	14	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	128797410	128797410	C	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.689	p.P230H	0.993	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	49	0	0	30	5	14.29	-	-	-	A	128797410	C	A	128797410	3	1	583	1	0	0	0	0	1	0	0	0	264	681	24	4	695	4	ADAMTS19	5	128797410	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	48725856	128797410	52117850	60	52197										
STK10	0	genome.wustl.edu	37	chr5	171533651	171533651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agggcgtgagcagcgtgggaGggtccgacttggcgatcttt	18	8	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	171533651	171533651	G	A	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	missense	c.761	p.P254L	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	219	0	0	42	52	55.32	-	-	-	A	171533651	G	A	171533651	3	1	583	1	0	0	0	0	1	0	0	0	15377	1000	35	4	2201	4	STK10	5	171533651	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	42736241	171533651	9381609	61	52198										
NSD1	0	genome.wustl.edu	37	chr5	176721686	176721686	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtagctaaagaaaaagcactGaggcctgtggaccagaatac	11	8	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	176721686	176721686	G	A	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	silent	c.7317	p.L2439	1.000	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	93	0	0	42	41	49.4	-	-	-	A	176721686	G	A	176721686	2	1	583	1	0	0	0	0	0	0	0	1	10742	1277	45	2		2	NSD1	5	176721686	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	5188035	176721686	4193574	62	52199										
CANX	0	genome.wustl.edu	37	chr5	179134161	179134161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tatccaaagccaagaaagacGataccgatgatgaaattgcc	8	9	0	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	5	179134161	179134161	G	C	SNP	CANX	ENST00000415618	human	ensembl	69_37n	1	known	missense	c.379	p.D127H	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022	607	1	0.16	524	585	52.75	-	-	-	C	179134161	G	C	179134161	3	2	583	1	0	0	0	0	1	0	0	0	2643	1058	37	3	284	3	CANX	5	179134161	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	2412475	179134161	1781099	63	52200										
HIST1H2BH	0	genome.wustl.edu	37	chr6	26251947	26251947	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aaggcggtgaccaaggcgcaGaagaaggatggcaagaagcg	17	7	0	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	6	26251947	26251947	G	A	SNP	HIST1H2BH	ENST00000356350	human	ensembl	69_37n	1	known	silent	c.69	p.Q23	0.998	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459	472	1	0.21	338	119	26.04	-	-	-	A	26251947	G	A	26251947	2	1	583	1	0	0	0	0	0	0	0	1	7198	933	33	2		2	HIST1H2BH	6	26251947	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		26251947	144863120	64	52201										
TNXB	0	genome.wustl.edu	37	chr6	32023670	32023670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cgggcccacacgccgcccctCgtggaggccgtacaggtgca	14	17	0	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	6	32023670	32023670	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.8425	p.E2809K	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	33	0	0	13	19	59.38	-	-	-	T	32023670	C	T	32023670	3	4	583	1	0	0	0	0	1	0	0	0	16441	893	31	1	6372	1	TNXB	6	32023670	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	5771723	32023670	139091397	65	52202										
GCLC	0	genome.wustl.edu	37	chr6	53372344	53372344	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gatgtcattatatttctcacCacacttagataaatagctgt	5	8	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	6	53372344	53372344	C	G	SNP	GCLC	ENST00000229416	human	ensembl	69_37n	-1	known	missense	c.1018	p.G340R	1.000	pfam_GCS	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084	519	0	0	774	122	13.62	-	-	-	G	53372344	C	G	53372344	3	3	583	1	0	0	0	0	1	0	0	0	6345	594	21	4	927	4	GCLC	6	53372344	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	21348674	53372344	117742723	66	52203										
BMP5	0	genome.wustl.edu	37	chr6	55739309	55739309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acgaggatacccattgggagAggctgggtatccctttcttg	13	9	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	6	55739309	55739309	A	G	SNP	BMP5	ENST00000370830	human	ensembl	69_37n	-1	known	missense	c.355	p.S119P	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175	290	0	0	222	117	34.41	-	-	-	G	55739309	A	G	55739309	3	3	583	1	0	0	0	0	1	0	0	0	1468	304	11	5	1037	5	BMP5	6	55739309	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	2366965	55739309	115375758	67	52204										
GRIK2	0	genome.wustl.edu	37	chr6	102483412	102483412	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gattggcggccttatagactCtaaaggttatggcgttggca	13	7	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	6	102483412	102483412	C	G	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.2282	p.S761C	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	83	0	0	28	63	69.23	-	-	-	G	102483412	C	G	102483412	3	3	583	1	0	0	0	0	1	0	0	0	6825	913	32	2	2336	2	GRIK2	6	102483412	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	46744103	102483412	68631655	68	52205										
AEBP1	0	genome.wustl.edu	37	chr7	44153560	44153560	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctgccccctgcccctgccacCaccctgagcactaccataga	6	21	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	44153560	44153560	C	G	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	silent	c.3177	p.T1059	0.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	206	0	0	194	53	21.37	-	-	-	G	44153560	C	G	44153560	2	3	583	1	0	0	0	0	0	0	0	1	349	581	21	4		4	AEBP1	7	44153560	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		44153560	114985103	69	52206										
AKAP9	0	genome.wustl.edu	37	chr7	91718833	91718833	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agagaacaagagagtgagaaAccaagccaaggtatgttgta	12	5	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	91718833	91718833	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.9360	p.K3120N	0.719	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	338	1	0.29	349	162	31.64	-	-	-	C	91718833	A	C	91718833	3	2	583	1	0	0	0	0	1	0	0	0	459	40	2	5	9498	5	AKAP9	7	91718833	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	47565273	91718833	67419830	70	52207										
DLX5	0	genome.wustl.edu	37	chr7	96650328	96650328	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccgggggcatctccccgtttTtcatgatcttcttgatcttg	9	12	5	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	96650328	96650328	T	G	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	missense	c.590	p.K197T	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	250	0	0	133	69	34.16	-	-	-	G	96650328	T	G	96650328	3	3	583	1	0	0	0	0	1	0	0	0	4610	1841	64	5	283	5	DLX5	7	96650328	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	4931495	96650328	62488335	71	52208										
DLX5	0	genome.wustl.edu	37	chr7	96651583	96651583	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cttctgaaaccttctctgtaAtgcggccagctgaaagctgg	10	11	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	96651583	96651583	A	G	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	silent	c.454	p.L152	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	250	0	0	170	81	32.27	-	-	-	G	96651583	A	G	96651583	2	3	583	1	0	0	0	0	0	0	0	1	4610	98	4	5		5	DLX5	7	96651583	Silent	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	1255	96651583	62487080	72	52209										
GRM8	0	genome.wustl.edu	37	chr7	126173298	126173298	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gggggggatccacaacaaacCagacaaacactccaaggagc	11	12	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	126173298	126173298	C	T	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	nonsense	c.2138	p.W713*	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	167	0	0	124	76	37.81	-	-	-	T	126173298	C	T	126173298	4	4	583	1	0	0	0	0	0	1	0	0	6854	595	21	4	650	4	GRM8	7	126173298	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	29521715	126173298	32965365	73	52210										
IMPDH1	0	genome.wustl.edu	37	chr7	128038635	128038635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcgggcgatgatggccaccaGctcatcgcaatcattgacga	12	12	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	7	128038635	128038635	G	C	SNP	IMPDH1	ENST00000338791	human	ensembl	69_37n	-1	known	missense	c.907	p.L303V	1.000	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_Cysta_beta_synth_core,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_Cysta_beta_synth_core,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348	82	0	0	40	47	54.02	-	-	-	C	128038635	G	C	128038635	3	2	583	1	0	0	0	0	1	0	0	0	7780	962	34	4	924	4	IMPDH1	7	128038635	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1865337	128038635	31100028	74	52211										
STMN4	0	genome.wustl.edu	37	chr8	27099197	27099197	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cgctgcctccctcctaccctGagctcttctttctctccagt	5	19	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	27099197	27099197	G	A	SNP	STMN4	ENST00000350889	human	ensembl	69_37n	-1	known	nonsense	c.187	p.Q63*	0.994	pirsf_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN4	HGNC	ENSG00000015592	236	0	0	54	53	49.53	-	-	-	A	27099197	G	A	27099197	4	1	583	1	0	0	0	0	0	1	0	0	15402	1299	45	2	479	2	STMN4	8	27099197	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		27099197	119264825	75	52212										
UBXN8	0	genome.wustl.edu	37	chr8	30614364	30614364	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaacttgcctaaacctttaaCtgaatttccgtctcctgctg	6	12	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	30614364	30614364	C	G	SNP	UBXN8	ENST00000265616	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBXN8	HGNC	ENSG00000104691	278	0	0	110	111	50	-	-	-	G	30614364	C	G	30614364	1	3	583	0	1	0	0	0	0	0	0	0	17016	565	20	4		4	UBXN8	8	30614364	RNA	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	3515167	30614364	115749658	76	52213										
C8orf44	0	genome.wustl.edu	37	chr8	67589946	67589946	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cagattaacgtagttgaaatGaggaagaatgagagttatct	11	3	1	5			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	67589946	67589946	G	A	SNP	C8orf44	ENST00000390159	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.000	NULL	NULL	-	no_errors	C8orf44	HGNC	ENSG00000213865	287	0	0	279	95	25.4	-	-	-	A	67589946	G	A	67589946	3	1	583	1	0	0	0	0	1	0	0	0	2453	1290	45	2	5	2	C8orf44	8	67589946	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	36975582	67589946	78774076	77	52214										
VPS13B	0	genome.wustl.edu	37	chr8	100830977	100830977	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tttttatcatgaggagtcatCttccagaccccattatcata	5	10	4	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	100830977	100830977	C	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.8557	p.L2853V	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	378	0	0	485	159	24.69	-	-	-	G	100830977	C	G	100830977	3	3	583	1	0	0	0	0	1	0	0	0	17287	913	32	2	8933	2	VPS13B	8	100830977	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	33241031	100830977	45533045	78	52215										
NDUFB9	0	genome.wustl.edu	37	chr8	125551447	125551447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aatggcgttcttggcgtcggGaccctacctgacccatcagc	11	14	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	125551447	125551447	G	T	SNP	NDUFB9	ENST00000276689	human	ensembl	69_37n	1	known	missense	c.20	p.G7V	0.000	NULL	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684	32	0	0	52	13	20	-	-	-	T	125551447	G	T	125551447	3	4	583	1	0	0	0	0	1	0	0	0	10360	1174	41	2	22	2	NDUFB9	8	125551447	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	24720470	125551447	20812575	79	52216										
BAI1	0	genome.wustl.edu	37	chr8	143618431	143618431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggctccttccagaacggccaCgcccagctcatggtaggact	11	15	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	8	143618431	143618431	C	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.3654	p.H1218Q	0.704	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	47	0	0	21	9	30	-	-	-	A	143618431	C	A	143618431	3	1	583	1	0	0	0	0	1	0	0	0	1302	535	19	3	3752	3	BAI1	8	143618431	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	18066984	143618431	2745591	80	52217										
LINGO2	0	genome.wustl.edu	37	chr9	27950483	27950483	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tagcctgtttttactgaggtCcaagattttggtttcgatgg	11	6	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	27950483	27950483	C	G	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.187	p.D63H	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	314	0	0	246	119	32.6	-	-	-	G	27950483	C	G	27950483	3	3	583	1	0	0	0	0	1	0	0	0	8871	855	30	2	1637	2	LINGO2	9	27950483	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		27950483	113262948	81	52218										
VPS13A	0	genome.wustl.edu	37	chr9	79954717	79954717	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	attggatggtcaataaaactGgccgcatgttacagtacaaa	9	7	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	79954717	79954717	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.6664	p.G2222R	1.000	pfam_VPSAP	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	241	0	0	96	113	54.07	-	-	-	C	79954717	G	C	79954717	3	2	583	1	0	0	0	0	1	0	0	0	17286	1348	47	4	6854	4	VPS13A	9	79954717	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	52004234	79954717	61258714	82	52219										
C9orf3	0	genome.wustl.edu	37	chr9	97522822	97522822	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tatggtacaaaactaaacctGaagggcgatcggttacatgg	11	7	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	97522822	97522822	G	A	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	0.043	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	124	1	0.8	30	97	76.38	-	-	-	A	97522822	G	A	97522822	3	1	583	1	0	0	0	0	1	0	0	0	2502	1291	45	2	759	2	C9orf3	9	97522822	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	17568105	97522822	43690609	83	52220										
LPPR1	0	genome.wustl.edu	37	chr9	104032342	104032342	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtgtgctggctgccaccccaActgctattgtaagtacagaa	10	11	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	104032342	104032342	A	C	SNP	LPPR1	ENST00000374871	human	ensembl	69_37n	1	known	missense	c.244	p.T82P	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP11-35N6.1	Clone_based_vega_gene	ENSG00000148123	133	0	0	35	90	72	-	-	-	C	104032342	A	C	104032342	3	2	583	1	0	0	0	0	1	0	0	0	8990	43	2	5	250	5	LPPR1	9	104032342	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	6509520	104032342	37181089	84	52221										
OR13C4	0	genome.wustl.edu	37	chr9	107288610	107288610	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tatttctcaagctatagattAtggggtttaacatgggggtc	11	5	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	107288610	107288610	A	T	SNP	OR13C4	ENST00000277216	human	ensembl	69_37n	-1	known	missense	c.881	p.I294K	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C4	HGNC	ENSG00000148136	131	0	0	101	63	38.41	-	-	-	T	107288610	A	T	107288610	3	4	583	1	0	0	0	0	1	0	0	0	11009	449	16	5	77	5	OR13C4	9	107288610	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	3256268	107288610	33924821	85	52222										
RGS3	0	genome.wustl.edu	37	chr9	116241773	116241773	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctgttgctgtttccttaggtCagctgaggctgtccattgat	11	9	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	116241773	116241773	C	T	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	nonsense	c.418	p.Q140*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	595	0	0	327	187	36.38	-	-	-	T	116241773	C	T	116241773	4	4	583	1	0	0	0	0	0	1	0	0	13390	827	29	2	515	2	RGS3	9	116241773	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	8953163	116241773	24971658	86	52223										
RPL35	0	genome.wustl.edu	37	chr9	127620332	127620332	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttaggccgcaggtccaggggCttgtacttcttgccctggga	14	11	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	127620332	127620332	C	G	SNP	RPL35	ENST00000348462	human	ensembl	69_37n	-1	known	missense	c.237	p.K79N	1.000	NULL	pfam_Ribosomal_L29,superfamily_Ribosomal_L29,tigrfam_Ribosomal_L29	-	no_errors	RPL35	HGNC	ENSG00000136942	72	0	0	13	35	72.92	-	-	-	G	127620332	C	G	127620332	3	3	583	1	0	0	0	0	1	0	0	0	13670	796	28	4	138	4	RPL35	9	127620332	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	11378559	127620332	13593099	87	52224										
SURF6	0	genome.wustl.edu	37	chr9	136200568	136200568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcctacctggccccgggcctCctggatcttctcatgcagtc	10	17	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	136200568	136200568	C	G	SNP	SURF6	ENST00000372022	human	ensembl	69_37n	-1	known	missense	c.379	p.E127Q	1.000	NULL	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	47	0	0	17	11	39.29	-	-	-	G	136200568	C	G	136200568	3	3	583	1	0	0	0	0	1	0	0	0	15497	864	30	2	718	2	SURF6	9	136200568	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	8580236	136200568	5012863	88	52225										
NOTCH1	0	genome.wustl.edu	37	chr9	139390731	139390731	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	caggcgaggagtagctgtgcTgcgaggggggcgtcaggaac	20	8	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	139390731	139390731	T	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.7460	p.Q2487L	1.000	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	86	0	0	7	44	86.27	-	-	-	A	139390731	T	A	139390731	3	1	583	1	0	0	0	0	1	0	0	0	10619	1580	55	5	211	5	NOTCH1	9	139390731	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	3190163	139390731	1822700	89	52226										
ENTPD2	0	genome.wustl.edu	37	chr9	139946068	139946068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaggcatccaacaagactctGgctggccccagaagggttgt	13	11	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	9	139946068	139946068	G	C	SNP	ENTPD2	ENST00000355097	human	ensembl	69_37n	-1	known	missense	c.280	p.Q94E	0.999	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD2	HGNC	ENSG00000054179	100	0	0	53	21	28.38	-	-	-	C	139946068	G	C	139946068	3	2	583	1	0	0	0	0	1	0	0	0	5176	1357	47	4	1235	4	ENTPD2	9	139946068	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	555337	139946068	1267363	90	52227										
MCM10	0	genome.wustl.edu	37	chr10	13251286	13251286	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccaagaggagaagaacatgcTaaatttctgaacagccttaa	8	8	1	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	13251286	13251286	T	A	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	silent	c.2604	p.A868	0.983	pfam_Rep_factor_Mcm10	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	411	0	0	582	78	11.82	-	-	-	A	13251286	T	A	13251286	2	1	583	1	0	0	0	0	0	0	0	1	9456	1509	53	5		5	MCM10	10	13251286	Silent	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09		13251286	122283461	91	52228										
CUBN	0	genome.wustl.edu	37	chr10	16893355	16893355	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tccatacacagtttaaattcTtgtcatacattccattcgaa	3	10	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	16893355	16893355	T	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.9542	p.K3181R	0.135	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	251	0	0	183	101	35.56	-	-	-	C	16893355	T	C	16893355	3	2	583	1	0	0	0	0	1	0	0	0	4082	1609	56	5	1361	5	CUBN	10	16893355	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	3642069	16893355	118641392	92	52229										
ANKRD30A	0	genome.wustl.edu	37	chr10	37508523	37508523	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aacgtgaaacacagtgtcaaAtgaaggaagctgaacacatg	10	7	1	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	37508523	37508523	A	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	missense	c.3715	p.M1239V	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	269	0	0	209	90	30.1	-	-	-	G	37508523	A	G	37508523	3	3	583	1	0	0	0	0	1	0	0	0	658	101	4	5	3849	5	ANKRD30A	10	37508523	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	20615168	37508523	98026224	93	52230										
SGMS1	0	genome.wustl.edu	37	chr10	52103557	52103557	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttcctatacccatttggcatCccgttgggtttaatcttgat	7	10	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	52103557	52103557	C	A	SNP	SGMS1	ENST00000361781	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	0.992	NULL	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964	305	0	0	268	55	17.03	-	-	-	A	52103557	C	A	52103557	2	1	583	1	0	0	0	0	0	0	0	1	14302	842	30	2		2	SGMS1	10	52103557	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	14595034	52103557	83431190	94	52231										
ARID5B	0	genome.wustl.edu	37	chr10	63661995	63661998	+	Frame_Shift_Del	DEL	AAGA	AAGA	-													0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttccaccttgaaggcaaaccAagaattttgtcccttggcga							TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	63661995	63661998	AAGA	-	DEL	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	frame_shift_del	c.99_102	p.R34fs	1.000:1.000:1.000:1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	249	1	0.4	160	88	35.34	-	-	-	-	63661998	AAGA	-	63661995	7	5	583	1	0	1	0	1	0	0	0	0	924	117	5	0	105	0	ARID5B	10	63661995	Frame_Shift_Del	DEL	AAGA	TCGA-BH-A18V-01A-11D-A12B-09	11558438	63661995	71872752	95	52232										
STAMBPL1	0	genome.wustl.edu	37	chr10	90661472	90661472	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acagataagacaacatggatCagccttttactgtgaattct	7	8	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	90661472	90661472	C	A	SNP	STAMBPL1	ENST00000371927	human	ensembl	69_37n	1	known	missense	c.7	p.Q3K	0.986	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBPL1	HGNC	ENSG00000138134	481	2	0.41	242	182	42.92	-	-	-	A	90661472	C	A	90661472	3	1	583	1	0	0	0	0	1	0	0	0	15342	827	29	2	9	2	STAMBPL1	10	90661472	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	26999477	90661472	44873275	96	52233										
CYP2C8	0	genome.wustl.edu	37	chr10	96829054	96829054	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	catatttccaataataggaaGaggagtggggccaggaggga	15	5	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	96829054	96829054	G	A	SNP	CYP2C8	ENST00000371270	human	ensembl	69_37n	-1	known	missense	c.106	p.L36F	0.995	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115	206	0	0	124	100	44.64	-	-	-	A	96829054	G	A	96829054	3	1	583	1	0	0	0	0	1	0	0	0	4198	942	33	2	1402	2	CYP2C8	10	96829054	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	6167582	96829054	38705693	97	52234										
LZTS2	0	genome.wustl.edu	37	chr10	102762473	102762473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccaccttcttccgccagcagGatggcctgctacggggtggc	13	15	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	10	102762473	102762473	G	A	SNP	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	missense	c.178	p.D60N	1.000	NULL	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	29	0	0	14	6	30	-	-	-	A	102762473	G	A	102762473	3	1	583	1	0	0	0	0	1	0	0	0	9206	1174	41	2	180	2	LZTS2	10	102762473	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	5933419	102762473	32772274	98	52235										
KCNA4	0	genome.wustl.edu	37	chr11	30034200	30034200	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gactgttgcaccctgagctcTccgcactcaccattgcaacc	7	17	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	30034200	30034200	T	C	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.26	p.E9G	1.000	pfam_K_chnl_volt-dep_Kv1.4_TID,prints_K_chnl_volt-dep_Kv1.4	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	49	0	0	7	10	58.82	-	-	-	C	30034200	T	C	30034200	3	2	583	1	0	0	0	0	1	0	0	0	8059	1551	54	5	1939	5	KCNA4	11	30034200	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09		30034200	104972316	99	52236										
PPP2R5B	0	genome.wustl.edu	37	chr11	64699231	64699231	+	Missense_Mutation	SNP	T	T	C													0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acccacccaggtgatgtttcTgggggagatggaagagattc							TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	64699231	64699231	T	C	SNP	PPP2R5B	ENST00000164133	human	ensembl	69_37n	1	known	missense	c.1007	p.L336P	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	178	0	0	128	70	35.35	-	-	-	C	64699231	T	C	64699231	3	2	583	1	0	0	0	0	1	0	0	0	12470	1580	55	5	1045	5	PPP2R5B	11	64699231	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	34665031	64699231	70307285	100	52237	427	2								
PPP2R5B	0	genome.wustl.edu	37	chr11	64699232	64699232	+	Silent	SNP	G	G	T													0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cccacccaggtgatgtttctGggggagatggaagagattct							TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	64699232	64699232	G	T	SNP	PPP2R5B	ENST00000164133	human	ensembl	69_37n	1	known	silent	c.1008	p.L336	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	180	0	0	127	70	35.35	-	-	-	T	64699232	G	T	64699232	2	4	583	1	0	0	0	0	0	0	0	1	12470	1335	47	4		4	PPP2R5B	11	64699232	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1	64699232	70307284	101	52238	427	2								
CARNS1	0	genome.wustl.edu	37	chr11	67191270	67191270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gttcggggcaggtgcagtggGtgtccggctggtagaggatg	21	6	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	67191270	67191270	G	T	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	missense	c.2051	p.G684V	0.999	pfscan_ATP-grasp	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	112	0	0	37	24	39.34	-	-	-	T	67191270	G	T	67191270	3	4	583	1	0	0	0	0	1	0	0	0	2681	1261	44	4	2085	4	CARNS1	11	67191270	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	2492038	67191270	67815246	102	52239										
FLI1	0	genome.wustl.edu	37	chr11	128638063	128638063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atgcagcaagctggtgggcgGaggcgagtccaaccccatga	15	11	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	128638063	128638063	G	A	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	missense	c.281	p.G94E	0.995	superfamily_SAM/pointed	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	351	0	0	62	104	62.28	-	-	-	A	128638063	G	A	128638063	3	1	583	1	0	0	0	0	1	0	0	0	5970	1174	41	2	291	2	FLI1	11	128638063	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	61446793	128638063	6368453	103	52240										
BARX2	0	genome.wustl.edu	37	chr11	129306882	129306882	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggagtcgcaccatcttcaccGagctgcagctcatgggcctg	12	14	3	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	11	129306882	129306882	G	T	SNP	BARX2	ENST00000281437	human	ensembl	69_37n	1	known	nonsense	c.424	p.E142*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	BARX2	HGNC	ENSG00000043039	96	0	0	32	4	11.11	-	-	-	T	129306882	G	T	129306882	4	4	583	1	0	0	0	0	0	1	0	0	1320	1059	37	3	430	3	BARX2	11	129306882	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	668819	129306882	5699634	104	52241										
CLEC2D	0	genome.wustl.edu	37	chr12	9833616	9833616	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atcatagtgtgtggaatggtTgctgctttaagcggtaagtg	14	4	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	9833616	9833616	T	G	SNP	CLEC2D	ENST00000261340	human	ensembl	69_37n	1	known	silent	c.159	p.V53	0.000	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493	627	0	0	956	136	12.45	-	-	-	G	9833616	T	G	9833616	2	3	583	1	0	0	0	0	0	0	0	1	3538	1799	63	5		5	CLEC2D	12	9833616	Silent	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09		9833616	124018279	105	52242										
CLEC9A	0	genome.wustl.edu	37	chr12	10205227	10205227	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ccaacctgctccaaaccacaAgaggagttacttgttccagc	7	14	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	10205227	10205227	A	T	SNP	CLEC9A	ENST00000355819	human	ensembl	69_37n	1	putative	splice_site	c.1-2	e1-2	0.001	-	-	-	no_errors	CLEC9A	HGNC	ENSG00000197992	151	0	0	209	64	23.44	-	-	-	T	10205227	A	T	10205227	5	4	583	1	0	0	0	0	0	0	1	0	3552	86	3	5		5	CLEC9A	12	10205227	Splice_Site	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	371611	10205227	123646668	106	52243										
STRAP	0	genome.wustl.edu	37	chr12	16055855	16055855	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttttttttacttatagaagaAattgcttcagagaattcaga	6	4	2	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	16055855	16055855	A	T	SNP	STRAP	ENST00000025399	human	ensembl	69_37n	1	known	missense	c.1035	p.E345D	0.992	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	97	0	0	135	46	25.41	-	-	-	T	16055855	A	T	16055855	3	4	583	1	0	0	0	0	1	0	0	0	15417	11	1	5	1034	5	STRAP	12	16055855	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	5850628	16055855	117796040	107	52244										
PLEKHA5	0	genome.wustl.edu	37	chr12	19500091	19500091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaagatgtatcaagttcaagGatatccaagaaatggatctc	9	6	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	19500091	19500091	G	C	SNP	PLEKHA5	ENST00000317589	human	ensembl	69_37n	1	known	missense	c.2564	p.G855A	1.000	NULL	pfam_Pleckstrin_homology,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_Rsp5_WWP	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	273	0	0	252	92	26.74	-	-	-	C	19500091	G	C	19500091	3	2	583	1	0	0	0	0	1	0	0	0	12133	1174	41	2	2763	2	PLEKHA5	12	19500091	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	3444236	19500091	114351804	108	52245										
PDE3A	0	genome.wustl.edu	37	chr12	20799535	20799535	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tcatggttcaaccagtgattCaggtatgtacgaagtgaatc	10	7	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	20799535	20799535	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.2363	p.S788L	1.000	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	320	0	0	471	178	27.43	-	-	-	T	20799535	C	T	20799535	3	4	583	1	0	0	0	0	1	0	0	0	11710	838	29	2	2405	2	PDE3A	12	20799535	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	1299444	20799535	113052360	109	52246										
RECQL	0	genome.wustl.edu	37	chr12	21624426	21624426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atcttcacgaggaagtgtggGagccacaacacctgctactc	10	12	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	21624426	21624426	G	A	SNP	RECQL	ENST00000421138	human	ensembl	69_37n	-1	known	missense	c.1603	p.P535S	0.999	pfam_RQC_domain,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	240	1	0.41	289	119	29.1	-	-	-	A	21624426	G	A	21624426	3	1	583	1	0	0	0	0	1	0	0	0	13284	1174	41	2	358	2	RECQL	12	21624426	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	824891	21624426	112227469	110	52247										
ETNK1	0	genome.wustl.edu	37	chr12	22796922	22796922	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttatacaaggagaagcactgGatccaaagcatgtctgcaac	9	9	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	22796922	22796922	G	A	SNP	ETNK1	ENST00000538218	human	ensembl	69_37n	1	putative	nonsense	c.621	p.W207*	1.000	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ETNK1	HGNC	ENSG00000139163	143	0	0	345	69	16.67	-	-	-	A	22796922	G	A	22796922	4	1	583	1	0	0	0	0	0	1	0	0	5310	1174	41	2	655	2	ETNK1	12	22796922	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1172496	22796922	111054973	111	52248										
CSRNP2	0	genome.wustl.edu	37	chr12	51457830	51457830	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cattcagatccttctcctttGggaaagaggctgagccttct	9	11	3	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	51457830	51457830	G	C	SNP	CSRNP2	ENST00000228515	human	ensembl	69_37n	-1	known	missense	c.1331	p.P444R	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925	174	0	0	97	14	12.5	-	-	-	C	51457830	G	C	51457830	3	2	583	1	0	0	0	0	1	0	0	0	3996	1348	47	4	304	4	CSRNP2	12	51457830	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	28660908	51457830	82394065	112	52249										
MYO1A	0	genome.wustl.edu	37	chr12	57423998	57423998	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tctgggaggccctcacctctGgggatatgaagccttcttgc	12	12	4	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	57423998	57423998	G	C	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	missense	c.2587	p.Q863E	0.999	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	191	0	0	50	51	50.5	-	-	-	C	57423998	G	C	57423998	3	2	583	1	0	0	0	0	1	0	0	0	10140	1357	47	4	564	4	MYO1A	12	57423998	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	5966168	57423998	76427897	113	52250										
UTP20	0	genome.wustl.edu	37	chr12	101757468	101757468	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acgactcttatgaaatcctcGgcaagtttgtaggaaaagat	9	7	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	12	101757468	101757468	G	C	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.5905	p.G1969R	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	384	0	0	195	70	26.32	-	-	-	C	101757468	G	C	101757468	3	2	583	1	0	0	0	0	1	0	0	0	17196	1116	39	3	6083	3	UTP20	12	101757468	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	44333470	101757468	32094427	114	52251										
MTUS2	0	genome.wustl.edu	37	chr13	29600959	29600959	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gacctgcagaagccaagggtCttcagttccggattgatggt	13	9	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	29600959	29600959	C	G	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.2154	p.V718	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	174	0	0	168	41	19.43	-	-	-	G	29600959	C	G	29600959	2	3	583	1	0	0	0	0	0	0	0	1	10038	900	32	2		2	MTUS2	13	29600959	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		29600959	85568919	115	52252										
MAB21L1	0	genome.wustl.edu	37	chr13	36049917	36049917	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tgcgcgccgagaggtagccgGaggcggtaatgaattccacc	15	11	0	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	36049917	36049917	G	C	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	missense	c.359	p.S120C	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	85	0	0	44	22	33.33	-	-	-	C	36049917	G	C	36049917	3	2	583	1	0	0	0	0	1	0	0	0	9208	1174	41	2	724	2	MAB21L1	13	36049917	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	6448958	36049917	79119961	116	52253										
MTRF1	0	genome.wustl.edu	37	chr13	41834948	41834948	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agccttgtatcaagatgtatCtgtctaaattgatgagaatg	9	5	3	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	41834948	41834948	C	G	SNP	MTRF1	ENST00000430347	human	ensembl	69_37n	-1	known	missense	c.135	p.Q45H	0.074	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662	225	0	0	170	107	38.63	-	-	-	G	41834948	C	G	41834948	3	3	583	1	0	0	0	0	1	0	0	0	10031	912	32	2	1277	2	MTRF1	13	41834948	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	5785031	41834948	73334930	117	52254										
HTR2A	0	genome.wustl.edu	37	chr13	47409443	47409443	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	catgccttttgctcattgctGatggactgcatagtcctcct	8	12	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	47409443	47409443	G	A	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	silent	c.945	p.I315	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	151	1	0.65	97	61	38.61	-	-	-	A	47409443	G	A	47409443	2	1	583	1	0	0	0	0	0	0	0	1	7495	1280	45	2		2	HTR2A	13	47409443	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	5574495	47409443	67760435	118	52255										
KLHL1	0	genome.wustl.edu	37	chr13	70456605	70456605	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggagtaaaaactcttgatttCtgataacttccattatgttt	6	6	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	70456605	70456605	C	T	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	missense	c.1037	p.R346K	1.000	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	290	0	0	309	85	21.57	-	-	-	T	70456605	C	T	70456605	3	4	583	1	0	0	0	0	1	0	0	0	8418	913	32	2	1237	2	KLHL1	13	70456605	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	23047162	70456605	44713273	119	52256										
GPR180	0	genome.wustl.edu	37	chr13	95273462	95273462	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tctacgcctgcatccactggCattgcagtattcattgtcat	7	12	3	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	95273462	95273462	C	T	SNP	GPR180	ENST00000376958	human	ensembl	69_37n	1	known	silent	c.867	p.G289	0.974	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	-	no_errors	GPR180	HGNC	ENSG00000152749	277	1	0.36	396	106	21.12	-	-	-	T	95273462	C	T	95273462	2	4	583	1	0	0	0	0	0	0	0	1	6726	697	25	4		4	GPR180	13	95273462	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	24816857	95273462	19896416	120	52257										
SLC15A1	0	genome.wustl.edu	37	chr13	99376256	99376256	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aggtgactgcttgtccaattGtgtagacaatggagagcgac	13	7	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	99376256	99376256	G	C	SNP	SLC15A1	ENST00000376503	human	ensembl	69_37n	-1	known	missense	c.275	p.T92R	1.000	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	536	2	0.37	426	170	28.52	-	-	-	C	99376256	G	C	99376256	3	2	583	1	0	0	0	0	1	0	0	0	14487	1377	48	4	1927	4	SLC15A1	13	99376256	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	4102794	99376256	15793622	121	52258										
NALCN	0	genome.wustl.edu	37	chr13	101748002	101748002	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagttctttgacacactgacAttaattctgaatatgccatt	5	8	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	13	101748002	101748002	A	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3192	p.N1064K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	295	0	0	225	249	52.53	-	-	-	T	101748002	A	T	101748002	3	4	583	1	0	0	0	0	1	0	0	0	10220	214	8	5	2092	5	NALCN	13	101748002	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	2371746	101748002	13421876	122	52259										
NYNRIN	0	genome.wustl.edu	37	chr14	24880591	24880591	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctgacgaagctacactcgctCaagatgctttcaatcacacc	6	14	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	14	24880591	24880591	C	G	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	silent	c.2577	p.L859	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	376	0	0	86	121	58.17	-	-	-	G	24880591	C	G	24880591	2	3	583	1	0	0	0	0	0	0	0	1	10869	813	29	2		2	NYNRIN	14	24880591	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		24880591	82468949	123	52260										
TSHR	0	genome.wustl.edu	37	chr14	81606112	81606112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagaaacacctggactcttaAgaaacttccactttccttga	5	11	1	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	14	81606112	81606112	A	T	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.782	p.K261M	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	248	0	0	127	99	43.81	-	-	-	T	81606112	A	T	81606112	3	4	583	1	0	0	0	0	1	0	0	0	16718	72	3	5	953	5	TSHR	14	81606112	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	56725521	81606112	25743428	124	52261										
STON2	0	genome.wustl.edu	37	chr14	81862331	81862331	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gctgatggccgaggccaggtCaggtgggggctgctcagggc	20	10	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	14	81862331	81862331	C	G	SNP	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	missense	c.280	p.D94H	1.000	pfam_Stonin2_N,pirsf_Stonin	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	144	0	0	31	68	68.69	-	-	-	G	81862331	C	G	81862331	3	3	583	1	0	0	0	0	1	0	0	0	15409	826	29	2	2451	2	STON2	14	81862331	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	256219	81862331	25487209	125	52262										
CLMN	0	genome.wustl.edu	37	chr14	95669354	95669354	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cgaggaactggagctgctctGagagccatcggcctcctcct	12	14	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	14	95669354	95669354	G	A	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	nonsense	c.2332	p.Q778*	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	96	0	0	50	27	35.06	-	-	-	A	95669354	G	A	95669354	4	1	583	1	0	0	0	0	0	1	0	0	3572	1299	45	2	696	2	CLMN	14	95669354	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	13807023	95669354	11680186	126	52263										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32929259	32929259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	caaggacgaggctagatcctCtttctcacagcagagtacat	9	11	2	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	32929259	32929259	C	G	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	missense	c.2285	p.S762C	0.006	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	103	0	0	93	42	31.11	-	-	-	G	32929259	C	G	32929259	3	3	583	1	0	0	0	0	1	0	0	0	865	913	32	2	2354	2	ARHGAP11A	15	32929259	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		32929259	69602133	127	52264										
LTK	0	genome.wustl.edu	37	chr15	41800394	41800394	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cagttgaggtgccttcggatCtctacctctccgtggttctc	10	13	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	41800394	41800394	C	A	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.1122	p.E374D	0.961	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	229	0	0	149	85	36.32	-	-	-	A	41800394	C	A	41800394	3	1	583	1	0	0	0	0	1	0	0	0	9146	912	32	2	1520	2	LTK	15	41800394	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	8871135	41800394	60730998	128	52265										
FBN1	0	genome.wustl.edu	37	chr15	48717990	48717990	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cccagttttacaaatgcaatGatatgatcctctgtcattga	6	9	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	48717990	48717990	G	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.7276	p.H2426N	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	445	1	0.22	305	164	34.82	-	-	-	T	48717990	G	T	48717990	3	4	583	1	0	0	0	0	1	0	0	0	5748	1290	45	2	1371	2	FBN1	15	48717990	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	6917596	48717990	53813402	129	52266										
FGF7	0	genome.wustl.edu	37	chr15	49716609	49716609	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcaatgacatgactccagagCaaatggctacaaatgtgaac	9	9	0	4			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	49716609	49716609	C	T	SNP	FGF7	ENST00000267843	human	ensembl	69_37n	1	known	nonsense	c.115	p.Q39*	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF7	HGNC	ENSG00000140285	282	0	0	227	139	37.57	-	-	-	T	49716609	C	T	49716609	4	4	583	1	0	0	0	0	0	1	0	0	5903	711	25	4	117	4	FGF7	15	49716609	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	998619	49716609	52814783	130	52267										
TRIP4	0	genome.wustl.edu	37	chr15	64687614	64687614	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagaaattttagatgggcagAaatcaggcgaccatctaaag	10	6	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	64687614	64687614	A	G	SNP	TRIP4	ENST00000261884	human	ensembl	69_37n	1	known	missense	c.289	p.K97E	0.026	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671	128	1	0.78	113	83	42.35	-	-	-	G	64687614	A	G	64687614	3	3	583	1	0	0	0	0	1	0	0	0	16654	247	9	5	299	5	TRIP4	15	64687614	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	14971005	64687614	37843778	131	52268										
NEO1	0	genome.wustl.edu	37	chr15	73593721	73593721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tcgggactctaggaaggagcCggcctcctatgccagtggtt	14	11	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	73593721	73593721	C	T	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.4225	p.R1409W	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	213	0	0	102	53	34.19	-	-	-	T	73593721	C	T	73593721	3	4	583	1	0	0	0	0	1	0	0	0	10408	643	23	1	4335	1	NEO1	15	73593721	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	8906107	73593721	28937671	132	52269										
ARID3B	0	genome.wustl.edu	37	chr15	74836815	74836815	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agccgaactggaatctggatGagcagctcaagcaggtcagt	13	9	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	74836815	74836815	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	69_37n	1	known	missense	c.538	p.E180K	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361	71	0	0	47	33	41.25	-	-	-	A	74836815	G	A	74836815	3	1	583	1	0	0	0	0	1	0	0	0	919	1291	45	2	540	2	ARID3B	15	74836815	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1243094	74836815	27694577	133	52270										
ZNF592	0	genome.wustl.edu	37	chr15	85327556	85327556	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtgaaaaaggctgccccactGattgtagaggtcttcaacaa	10	9	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	85327556	85327556	G	T	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	silent	c.1650	p.L550	0.067	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	82	0	0	50	25	33.33	-	-	-	T	85327556	G	T	85327556	2	4	583	1	0	0	0	0	0	0	0	1	18118	1277	45	2		2	ZNF592	15	85327556	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	10490741	85327556	17203836	134	52271										
ALPK3	0	genome.wustl.edu	37	chr15	85405916	85405916	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tgtttgctaagggtctggctGactctggctgctggggggac	17	8	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	85405916	85405916	G	T	SNP	ALPK3	ENST00000258888	human	ensembl	69_37n	1	known	missense	c.4786	p.D1596Y	1.000	superfamily_Kinase-like_dom,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK3	HGNC	ENSG00000136383	173	1	0.57	146	59	28.64	-	-	-	T	85405916	G	T	85405916	3	4	583	1	0	0	0	0	1	0	0	0	546	1290	45	2	4824	2	ALPK3	15	85405916	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	78360	85405916	17125476	135	52272										
MFGE8	0	genome.wustl.edu	37	chr15	89450546	89450546	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aagaaggtcacacgcacagaCgaggcggcgatctgtgagtt	14	9	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	15	89450546	89450546	C	G	SNP	MFGE8	ENST00000268150	human	ensembl	69_37n	-1	known	silent	c.267	p.S89	0.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545	56	0	0	54	32	31.07	-	-	-	G	89450546	C	G	89450546	2	3	583	1	0	0	0	0	0	0	0	1	9591	523	19	3		3	MFGE8	15	89450546	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	4044630	89450546	13080846	136	52273										
MKL2	0	genome.wustl.edu	37	chr16	14334339	14334339	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	accatcctgcctgcaccattCaagtacggcggggcccatgc	10	16	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	16	14334339	14334339	C	G	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.1044	p.F348L	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	164	0	0	104	58	35.58	-	-	-	G	14334339	C	G	14334339	3	3	583	1	0	0	0	0	1	0	0	0	9673	825	29	2	1107	2	MKL2	16	14334339	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		14334339	76020414	137	52274										
KIAA0430	0	genome.wustl.edu	37	chr16	15702342	15702342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gaaccgctccacctctgtcaGagtaaggatcttttcttctc	7	13	5	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	16	15702342	15702342	G	C	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.3988	p.L1330V	0.817	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	225	0	0	193	96	33.22	-	-	-	C	15702342	G	C	15702342	3	2	583	1	0	0	0	0	1	0	0	0	8229	933	33	2	1268	2	KIAA0430	16	15702342	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	1368003	15702342	74652411	138	52275										
IL21R	0	genome.wustl.edu	37	chr16	27448978	27448978	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	agtctggcaactactcccagGagtgtggcagctttctcctg	11	12	2	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	16	27448978	27448978	G	C	SNP	IL21R	ENST00000337929	human	ensembl	69_37n	1	known	missense	c.322	p.E108Q	0.985	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522	199	0	0	117	69	37.1	-	-	-	C	27448978	G	C	27448978	3	2	583	1	0	0	0	0	1	0	0	0	7725	1175	41	2	332	2	IL21R	16	27448978	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	11746636	27448978	62905775	139	52276										
ATP2C2	0	genome.wustl.edu	37	chr16	84473108	84473108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gacagtgacccagcttgtaaCgtcagatgggcttcgtgccg	13	11	1	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	16	84473108	84473108	C	T	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	missense	c.1187	p.T396M	0.947	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	383	0	0	266	127	32.23	-	-	-	T	84473108	C	T	84473108	3	4	583	1	0	0	0	0	1	0	0	0	1148	536	19	1	1237	1	ATP2C2	16	84473108	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	57024130	84473108	5881645	140	52277										
ZNF594	0	genome.wustl.edu	37	chr17	5087301	5087301	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttttttctccttcattacatCcatggccaatctctcccaca	2	15	3	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	5087301	5087301	C	G	SNP	ZNF594	ENST00000399604	human	ensembl	69_37n	-1	known	missense	c.251	p.G84A	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626	278	0	0	116	139	54.51	-	-	-	G	5087301	C	G	5087301	3	3	583	1	0	0	0	0	1	0	0	0	18120	855	30	2	2176	2	ZNF594	17	5087301	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09		5087301	76107909	141	52278										
TP53	0	genome.wustl.edu	37	chr17	7579521	7579521	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttcatctggacctgggtcttCagtgaaccattgttcaatat	8	9	5	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	7579521	7579521	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.166	p.E56*	0.074	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	145	0	0	29	47	61.84	-	-	-	A	7579521	C	A	7579521	4	1	583	1	0	0	0	0	0	1	0	0	16477	835	29	2	1136	2	TP53	17	7579521	Nonsense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	2492220	7579521	73615689	142	52279										
COPS3	0	genome.wustl.edu	37	chr17	17171253	17171253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tttgtattcatctgcatcttGtctatggcttgcttaaggat	8	7	4	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	17171253	17171253	G	T	SNP	COPS3	ENST00000268717	human	ensembl	69_37n	-1	known	missense	c.387	p.D129E	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS3	HGNC	ENSG00000141030	575	0	0	180	249	57.91	-	-	-	T	17171253	G	T	17171253	3	4	583	1	0	0	0	0	1	0	0	0	3764	1368	48	4	916	4	COPS3	17	17171253	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	9591732	17171253	64023957	143	52280										
PHF12	0	genome.wustl.edu	37	chr17	27240940	27240940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctaagtgctcagagttcaaaAggtgcatctgtgattcctca	9	9	4	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	27240940	27240940	A	G	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.1250	p.L417P	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	285	2	0.7	60	120	66.67	-	-	-	G	27240940	A	G	27240940	3	3	583	1	0	0	0	0	1	0	0	0	11897	72	3	5	1822	5	PHF12	17	27240940	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	10069687	27240940	53954270	144	52281										
GRB7	0	genome.wustl.edu	37	chr17	37899236	37899236	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tcgccacgtgtgtgaaatgcTggtgcagcgagctcacgcct	13	12	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	37899236	37899236	T	A	SNP	GRB7	ENST00000445327	human	ensembl	69_37n	1	known	missense	c.461	p.L154Q	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738	93	0	0	36	5	12.2	-	-	-	A	37899236	T	A	37899236	3	1	583	1	0	0	0	0	1	0	0	0	6810	1580	55	5	402	5	GRB7	17	37899236	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09	10658296	37899236	43295974	145	52282										
IFI35	0	genome.wustl.edu	37	chr17	41165360	41165360	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ctgcgggtgcaggtccagccCttggagctgcccatggtcac	14	14	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	41165360	41165360	C	G	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	silent	c.345	p.P115	0.681	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	107	0	0	60	17	22.08	-	-	-	G	41165360	C	G	41165360	2	3	583	1	0	0	0	0	0	0	0	1	7570	668	24	4		4	IFI35	17	41165360	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	3266124	41165360	40029850	146	52283										
SCN4A	0	genome.wustl.edu	37	chr17	62026013	62026013	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atcatgaagacaatgaaggtCtcgaaccagttgtgctcgac	10	9	2	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	62026013	62026013	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.3102	p.E1034	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	101	1	0.98	26	38	59.38	-	-	-	T	62026013	C	T	62026013	2	4	583	1	0	0	0	0	0	0	0	1	14008	912	32	2		2	SCN4A	17	62026013	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	20860653	62026013	19169197	147	52284										
ACOX1	0	genome.wustl.edu	37	chr17	73949695	73949695	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	tttcacgtatgtgccatcagGcttcacctggaagaagaacg	10	10	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	17	73949695	73949695	G	C	SNP	ACOX1	ENST00000293217	human	ensembl	69_37n	-1	known	missense	c.781	p.P261A	1.000	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533	257	0	0	74	89	54.27	-	-	-	C	73949695	G	C	73949695	3	2	583	1	0	0	0	0	1	0	0	0	158	1203	42	4	1233	4	ACOX1	17	73949695	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	11923682	73949695	7245515	148	52285										
LMNB2	0	genome.wustl.edu	37	chr19	2431811	2431811	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcgttaaccaggacggtgcgGaagctctcgcccgtgcccca	13	15	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	2431811	2431811	G	A	SNP	LMNB2	ENST00000325327	human	ensembl	69_37n	-1	known	silent	c.1680	p.F560	0.999	pfam_Lamin_tail_dom	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	54	0	0	13	17	56.67	-	-	-	A	2431811	G	A	2431811	2	1	583	1	0	0	0	0	0	0	0	1	8906	1165	41	2		2	LMNB2	19	2431811	Silent	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		2431811	56697172	149	52286										
APLP1	0	genome.wustl.edu	37	chr19	36370329	36370329	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	accccacttaccgcttcctgGaggaacgaccctgacccggc	9	18	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	36370329	36370329	G	C	SNP	APLP1	ENST00000221891	human	ensembl	69_37n	1	known	missense	c.1942	p.E648Q	1.000	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	114	0	0	74	38	33.93	-	-	-	C	36370329	G	C	36370329	3	2	583	1	0	0	0	0	1	0	0	0	780	1175	41	2	2008	2	APLP1	19	36370329	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	33938518	36370329	22758654	150	52287										
ACTN4	0	genome.wustl.edu	37	chr19	39219701	39219701	+	Frame_Shift_Del	DEL	C	C	-													0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	catagcggccttgtgaccttCcaagccttcatcgacttcat							TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	39219701	39219701	C	-	DEL	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	frame_shift_del	c.2484	p.Q829fs	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	96	0	0	36	15	28.85	-	-	-	-	39219701	C	-	39219701	7	5	583	1	0	1	0	1	0	0	0	0	207	854	30	0	2562	0	ACTN4	19	39219701	Frame_Shift_Del	DEL	C	TCGA-BH-A18V-01A-11D-A12B-09	2849372	39219701	19909282	151	52288										
SAMD4B	0	genome.wustl.edu	37	chr19	39847654	39847654	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cccgtacccaggcccgcttcCtgcagctctgcctggagcac	10	19	1	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	39847654	39847654	C	T	SNP	SAMD4B	ENST00000314471	human	ensembl	69_37n	1	known	silent	c.121	p.L41	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134	101	0	0	43	25	36.76	-	-	-	T	39847654	C	T	39847654	2	4	583	1	0	0	0	0	0	0	0	1	13908	680	24	4		4	SAMD4B	19	39847654	Silent	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	627953	39847654	19281329	152	52289										
ARHGEF1	0	genome.wustl.edu	37	chr19	42410647	42410647	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ttctgtttccggcggaggaaGacaatggggcggggcctcct	16	10	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	42410647	42410647	G	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	1	known	missense	c.2575	p.D859Y	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	68	0	0	35	18	33.96	-	-	-	T	42410647	G	T	42410647	3	4	583	1	0	0	0	0	1	0	0	0	895	942	33	2	2681	2	ARHGEF1	19	42410647	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	2562993	42410647	16718336	153	52290										
GIPR	0	genome.wustl.edu	37	chr19	46178065	46178065	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cccctaccttggggaccaggCccttgcgctgtggaaccagg	13	15	0	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	46178065	46178065	C	G	SNP	GIPR	ENST00000590918	human	ensembl	69_37n	1	known	missense	c.614	p.A205G	0.288	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_GIP_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GIPR	HGNC	ENSG00000010310	108	1	0.92	63	32	33.68	-	-	-	G	46178065	C	G	46178065	3	3	583	1	0	0	0	0	1	0	0	0	6447	739	26	4	636	4	GIPR	19	46178065	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	3767418	46178065	12950918	154	52291										
HIF3A	0	genome.wustl.edu	37	chr19	46828875	46828875	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aaagacactgaggcagtggaGacagatttagatatagctca	11	6	1	5			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	46828875	46828875	G	T	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.1419	p.E473D	0.979	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	203	0	0	150	72	32.43	-	-	-	T	46828875	G	T	46828875	3	4	583	1	0	0	0	0	1	0	0	0	7156	933	33	2	1485	2	HIF3A	19	46828875	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	650810	46828875	12300108	155	52292										
BCL2L12	0	genome.wustl.edu	37	chr19	50173639	50173639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cctggcccgcctggccctagCcatggagctgagccggcgcg	15	17	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	19	50173639	50173639	C	G	SNP	BCL2L12	ENST00000246785	human	ensembl	69_37n	1	known	missense	c.848	p.A283G	1.000	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453	13	0	0	1	4	80	-	-	-	G	50173639	C	G	50173639	3	3	583	1	0	0	0	0	1	0	0	0	1374	739	26	4	870	4	BCL2L12	19	50173639	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	3344764	50173639	8955344	156	52293										
CPXM1	0	genome.wustl.edu	37	chr20	2776651	2776651	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	ggcattgggcagggtgtagtAagtgggcaatggcaggtgat	19	4	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	20	2776651	2776651	A	G	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.1399	p.Y467H	0.987	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	353	0	0	90	108	54.55	-	-	-	G	2776651	A	G	2776651	3	3	583	1	0	0	0	0	1	0	0	0	3867	362	13	5	825	5	CPXM1	20	2776651	Missense_Mutation	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09		2776651	60248869	157	52294										
SEL1L2	0	genome.wustl.edu	37	chr20	13894543	13894543	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	cgtcagccattttctccataGctttcaagtttcccatgtca	5	13	4	0			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	20	13894543	13894543	G	T	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	missense	c.434	p.A145D	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	256	2	0.78	108	128	54.24	-	-	-	T	13894543	G	T	13894543	3	4	583	1	0	0	0	0	1	0	0	0	14099	971	34	4	1696	4	SEL1L2	20	13894543	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	11117892	13894543	49130977	158	52295										
SON	0	genome.wustl.edu	37	chr21	34927217	34927217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	caaaagagaagcgcaaaagaTctccaaagcacagatccaag	8	10	1	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	21	34927217	34927217	T	C	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	missense	c.5680	p.S1894P	0.994	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	113	0	0	77	35	31.25	-	-	-	C	34927217	T	C	34927217	3	2	583	1	0	0	0	0	1	0	0	0	15015	1435	50	5	5690	5	SON	21	34927217	Missense_Mutation	SNP	T	TCGA-BH-A18V-01A-11D-A12B-09		34927217	13202678	159	52296										
ZC3H7B	0	genome.wustl.edu	37	chr22	41752377	41752377	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcagcagacctatgacatgtGgctgaaaaaacacaacccag	9	11	0	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	22	41752377	41752377	G	C	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.2414	p.W805S	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	145	0	0	105	14	11.67	-	-	-	C	41752377	G	C	41752377	3	2	583	1	0	0	0	0	1	0	0	0	17669	1357	47	4	2492	4	ZC3H7B	22	41752377	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		41752377	9552189	160	52297										
SCUBE1	0	genome.wustl.edu	37	chr22	43634854	43634854	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acatgctgacctttgcatgtCttcccgtccggctgcagtgt	10	13	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	22	43634854	43634854	C	T	SNP	SCUBE1	ENST00000449304	human	ensembl	69_37n	-1	known	missense	c.394	p.D132N	1.000	smart_EGF-like,smart_EGF-like_Ca-bd	pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SCUBE1	HGNC	ENSG00000159307	61	0	0	29	20	40.82	-	-	-	T	43634854	C	T	43634854	3	4	583	1	0	0	0	0	1	0	0	0	14032	912	32	2	2196	2	SCUBE1	22	43634854	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	1882477	43634854	7669712	161	52298										
FIGF	0	genome.wustl.edu	37	chrX	15381257	15381257	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtgtttcaatgtcatagaaaGttgccgcaaacctagtggac	10	8	2	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	15381257	15381257	G	C	SNP	FIGF	ENST00000297904	human	ensembl	69_37n	-1	known	missense	c.275	p.T92S	0.997	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	FIGF	HGNC	ENSG00000165197	188	0	0	48	72	60	-	-	-	C	15381257	G	C	15381257	3	2	583	1	0	0	0	0	1	0	0	0	5935	1029	36	4	813	4	FIGF	23	15381257	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09		15381257	139889303	162	52299										
PHKA2	0	genome.wustl.edu	37	chrX	18918818	18918818	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gcactaaaccgcctagtcatCtgaaagcaaaaatacatcag	6	11	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	18918818	18918818	C	G	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	splice_site	c.3028-1	e28-1	1.000	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446	568	0	0	293	60	17	-	-	-	G	18918818	C	G	18918818	5	3	583	1	0	0	0	0	0	0	1	0	11918	927	32	2	704	2	PHKA2	23	18918818	Splice_Site	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	3537561	18918818	136351742	163	52300										
CDK16	0	genome.wustl.edu	37	chrX	47086816	47086816	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	atctccgcagaggatgccatGaaacatccattcttcctcag	7	13	3	2			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	47086816	47086816	G	T	SNP	CDK16	ENST00000520141	human	ensembl	69_37n	1	putative	nonsense	c.82	p.E28*	1.000	superfamily_Kinase-like_dom	superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon	CDK16	HGNC	ENSG00000102225	197	0	0	55	64	53.78	-	-	-	T	47086816	G	T	47086816	4	4	583	1	0	0	0	0	0	1	0	0	3161	1290	45	2	1615	2	CDK16	23	47086816	Nonsense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	28167998	47086816	108183744	164	52301										
USP11	0	genome.wustl.edu	37	chrX	47101698	47101698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	catggatccgcgccgcaagcCagagcaggtgtggggcagtg	17	11	0	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	47101698	47101698	C	T	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	missense	c.1526	p.P509L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	140	0	0	34	51	60	-	-	-	T	47101698	C	T	47101698	3	4	583	1	0	0	0	0	1	0	0	0	17139	594	21	4	1564	4	USP11	23	47101698	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	14882	47101698	108168862	165	52302										
SSX4	0	genome.wustl.edu	37	chrX	48244061	48244061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	gtgggaaaagatgaaatcctCggagaaaatcgtctatgtgt	12	5	1	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	48244061	48244061	C	G	SNP	SSX4	ENST00000376886	human	ensembl	69_37n	1	known	missense	c.128	p.S43W	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX4	HGNC	ENSG00000204645	83	0	0	46	10	17.86	-	-	-	G	48244061	C	G	48244061	3	3	583	1	0	0	0	0	1	0	0	0	15297	893	31	3	134	3	SSX4	23	48244061	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	1142363	48244061	107026499	166	52303										
SSX4B	0	genome.wustl.edu	37	chrX	48270249	48270249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	acacatagacgattttctccGaggatttcatcttttcccac	5	12	3	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	48270249	48270249	G	C	SNP	SSX4B	ENST00000376884	human	ensembl	69_37n	-1	known	missense	c.128	p.S43W	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX4B	HGNC	ENSG00000198946	686	2	0.29	383	132	25.63	-	-	-	C	48270249	G	C	48270249	3	2	583	1	0	0	0	0	1	0	0	0	15298	1059	37	3	1119	3	SSX4B	23	48270249	Missense_Mutation	SNP	G	TCGA-BH-A18V-01A-11D-A12B-09	26188	48270249	107000311	167	52304										
CCNB3	0	genome.wustl.edu	37	chrX	50053928	50053928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	attagccttgaagatgtctaCcatcaatgaggcagtcctct	8	10	3	3			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	50053928	50053928	C	A	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.2759	p.T920N	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	247	0	0	87	116	57.14	-	-	-	A	50053928	C	A	50053928	3	1	583	1	0	0	0	0	1	0	0	0	2943	507	18	4	2773	4	CCNB3	23	50053928	Missense_Mutation	SNP	C	TCGA-BH-A18V-01A-11D-A12B-09	1783679	50053928	105216632	168	52305										
CT45A5	0	genome.wustl.edu	37	chrX	134947485	134947485	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.267857142857143	45	5.95846642434494e-09	2.60009310986965	2.43758729050279	2.83646521076689	0.443600000851912	1	28	aatcgtttcctgactgcagtAggtccttgcactccttcaag	8	12	1	1			TCGA-BH-A18V-01A-11D-A12B-09	TCGA-BH-A18V-11A-52D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6150dd25-a8f4-4d9f-9da0-f956855ab67d	e968461c-7bb9-4db0-87c6-5e7c77c5042c	X	134947485	134947485	A	T	SNP	CT45A5	ENST00000370724	human	ensembl	69_37n	-1	known	silent	c.462	p.P154	0.006	NULL	superfamily_RmlC_Cupin	-	no_errors	CT45A5	HGNC	ENSG00000242284	90	0	0	21	45	68.18	-	-	-	T	134947485	A	T	134947485	2	4	583	1	0	0	0	0	0	0	0	1	4020	407	15	5		5	CT45A5	23	134947485	Silent	SNP	A	TCGA-BH-A18V-01A-11D-A12B-09	84893557	134947485	20323075	169	52306										
CHIA	0	genome.wustl.edu	37	chr1	111857167	111857167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tcctttgttttacaggaacaGccagctgaaaactctcctgg	8	11	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	1	111857167	111857167	G	A	SNP	CHIA	ENST00000343320	human	ensembl	69_37n	1	known	missense	c.263	p.S88N	0.019	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216	86	0	0	31	24	43.64	-	-	-	A	111857167	G	A	111857167	3	1	584	1	0	0	0	0	1	0	0	0	3371	971	34	4	277	4	CHIA	1	111857167	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09		111857167	137393454	1	52307										
MIA3	0	genome.wustl.edu	37	chr1	222828136	222828136	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	aaggagatggctttgcaaaaGtaagattatcatcatttact	8	5	2	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	1	222828136	222828136	G	C	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	splice_site	c.4607+1	e18+1	1.000	-	-	-	no_errors	MIA3	HGNC	ENSG00000154305	54	0	0	28	9	23.68	-	-	-	C	222828136	G	C	222828136	5	2	584	1	0	0	0	0	0	0	1	0	9636	1043	36	4	4678	4	MIA3	1	222828136	Splice_Site	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	110970969	222828136	26422485	2	52308										
ZP4	0	genome.wustl.edu	37	chr1	238049097	238049097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	gagtgaggggtccaggctggGtctcaggaaagggtggtggg	22	5	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	1	238049097	238049097	G	C	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.929	p.T310S	0.016	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	86	0	0	134	29	17.79	-	-	-	C	238049097	G	C	238049097	3	2	584	1	0	0	0	0	1	0	0	0	18311	1261	44	4	717	4	ZP4	1	238049097	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	15220961	238049097	11201524	3	52309										
ZNF669	0	genome.wustl.edu	37	chr1	247265394	247265394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ctgggtaaagttcacagccaCatcctcaaaagccaccgagt	8	13	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	1	247265394	247265394	C	T	SNP	ZNF669	ENST00000343381	human	ensembl	69_37n	-1	known	missense	c.283	p.V95M	0.998	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	20	0	0	34	15	30.61	-	-	-	T	247265394	C	T	247265394	3	4	584	1	0	0	0	0	1	0	0	0	18172	478	17	4	1123	4	ZNF669	1	247265394	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	9216297	247265394	1985227	4	52310										
CPSF3	0	genome.wustl.edu	37	chr2	9597078	9597078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tcaggtgatgtggaagaattAgaaattcaagaaaaacctgc	10	5	2	4			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	9597078	9597078	A	C	SNP	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	missense	c.1620	p.L540F	1.000	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	25	0	0	37	7	15.91	-	-	-	C	9597078	A	C	9597078	3	2	584	1	0	0	0	0	1	0	0	0	3856	417	15	5	1674	5	CPSF3	2	9597078	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09		9597078	233602295	5	52311										
REG3G	0	genome.wustl.edu	37	chr2	79253873	79253873	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	aaggaactgccctctccacgGatcagctgtcccaaaggctc	9	15	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	79253873	79253873	G	T	SNP	REG3G	ENST00000272324	human	ensembl	69_37n	1	known	silent	c.111	p.R37	0.000	prints_Pancreatis_ac	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	REG3G	HGNC	ENSG00000143954	84	0	0	105	20	16	-	-	-	T	79253873	G	T	79253873	2	4	584	1	0	0	0	0	0	0	0	1	13296	1161	41	2		2	REG3G	2	79253873	Silent	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	69656795	79253873	163945500	6	52312										
SLC5A7	0	genome.wustl.edu	37	chr2	108614411	108614411	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ttctgtggcctacactgatgTcgttcagctcttttgcattt	8	10	3	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	108614411	108614411	T	A	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	missense	c.566	p.V189D	0.998	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	108	0	0	105	23	17.97	-	-	-	A	108614411	T	A	108614411	3	1	584	1	0	0	0	0	1	0	0	0	14759	1667	58	5	580	5	SLC5A7	2	108614411	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09	29360538	108614411	134584962	7	52313										
MBD5	0	genome.wustl.edu	37	chr2	149227717	149227717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	gctttgccttgctctgctaaCcagctgcattttacagatcc	7	13	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	149227717	149227717	C	T	SNP	MBD5	ENST00000416015	human	ensembl	69_37n	1	novel	missense	c.1424	p.T475I	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MBD5	HGNC	ENSG00000204406	35	0	0	44	30	40.54	-	-	-	T	149227717	C	T	149227717	3	4	584	1	0	0	0	0	1	0	0	0	9418	506	18	4	2219	4	MBD5	2	149227717	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	40613306	149227717	93971656	8	52314										
CYTIP	0	genome.wustl.edu	37	chr2	158300389	158300389	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ccccgaggcagagtagccacCgtgtctgctagcatttgaat	11	12	1	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	158300389	158300389	C	T	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	silent	c.144	p.T48	0.011	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	120	1	0.83	64	15	18.99	-	-	-	T	158300389	C	T	158300389	2	4	584	1	0	0	0	0	0	0	0	1	4238	639	23	1		1	CYTIP	2	158300389	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	9072672	158300389	84898984	9	52315										
ICA1L	0	genome.wustl.edu	37	chr2	203653623	203653623	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	aggaatcgagaagaatgagcGaggggctcagaccccatgga	15	8	1	4			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	2	203653623	203653623	G	A	SNP	ICA1L	ENST00000358299	human	ensembl	69_37n	-1	known	silent	c.1173	p.L391	0.870	pfam_Islet_autoAg_Ica1_C	pfam_Islet_autoAg_Ica1_C,pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596	32	0	0	22	23	51.11	-	-	-	A	203653623	G	A	203653623	2	1	584	1	0	0	0	0	0	0	0	1	7532	1045	37	1		1	ICA1L	2	203653623	Silent	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	45353234	203653623	39545750	10	52316										
SNRK	0	genome.wustl.edu	37	chr3	43389849	43389849	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ggaatgcagggcaggtccctGcagtgggcggcataaagttt	16	8	0	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	3	43389849	43389849	G	C	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	1	known	missense	c.2098	p.A700P	0.376	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	42	0	0	29	9	23.68	-	-	-	C	43389849	G	C	43389849	3	2	584	1	0	0	0	0	1	0	0	0	14940	1319	46	4	2116	4	SNRK	3	43389849	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09		43389849	154632581	11	52317										
FBXL7	0	genome.wustl.edu	37	chr5	15936967	15936967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	caagctgcgctacctcaacgCgaggggctgcgagggcatca	14	13	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	5	15936967	15936967	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	69_37n	1	known	missense	c.1148	p.A383V	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL7	HGNC	ENSG00000183580	27	0	0	26	8	23.53	-	-	-	T	15936967	C	T	15936967	3	4	584	1	0	0	0	0	1	0	0	0	5770	768	27	1	1162	1	FBXL7	5	15936967	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		15936967	164978293	12	52318										
PARP8	0	genome.wustl.edu	37	chr5	50046013	50046013	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	actcagtacatgtatctgaaGattacccaggtatgcttttc	7	9	2	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	5	50046013	50046013	G	C	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	missense	c.175	p.D59H	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	116	0	0	141	33	18.97	-	-	-	C	50046013	G	C	50046013	3	2	584	1	0	0	0	0	1	0	0	0	11538	942	33	2	185	2	PARP8	5	50046013	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	34109046	50046013	130869247	13	52319										
TNXB	0	genome.wustl.edu	37	chr6	32021331	32021331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tccccattcctgtactggacCaggaagtggtcaaactggcc	10	13	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	6	32021331	32021331	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.8619	p.L2873	0.101	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	19	0	0	13	7	35	-	-	-	T	32021331	C	T	32021331	2	4	584	1	0	0	0	0	0	0	0	1	16441	581	21	4		4	TNXB	6	32021331	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		32021331	139093736	14	52320										
WDR46	0	genome.wustl.edu	37	chr6	33247311	33247311	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tgaccttcctcttcctcttcAccaggcttgccgtggagctg	9	15	3	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	6	33247311	33247311	A	G	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	missense	c.1697	p.V566A	1.000	NULL	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	123	0	0	66	40	37.74	-	-	-	G	33247311	A	G	33247311	3	3	584	1	0	0	0	0	1	0	0	0	17396	159	6	5	143	5	WDR46	6	33247311	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09	1225980	33247311	137867756	15	52321										
FBXL18	0	genome.wustl.edu	37	chr7	5541277	5541277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ccgagaggatggcgccctcgCgcgtgcggtccagaatctcg	15	14	1	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	7	5541277	5541277	C	T	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.623	p.R208H	0.938	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	12	0	0	15	12	44.44	-	-	-	T	5541277	C	T	5541277	3	4	584	1	0	0	0	0	1	0	0	0	5760	768	27	1	1545	1	FBXL18	7	5541277	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		5541277	153597386	16	52322										
MLL5	0	genome.wustl.edu	37	chr7	104752417	104752417	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	gctccaacaaaaacagctatCaaataacaaccaagcacttt	3	12	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	7	104752417	104752417	C	T	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.4214	p.S1405L	0.002	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	51	0	0	63	14	18.18	-	-	-	T	104752417	C	T	104752417	3	4	584	1	0	0	0	0	1	0	0	0	9695	838	29	2	4312	2	MLL5	7	104752417	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	99211140	104752417	54386246	17	52323										
LINGO2	0	genome.wustl.edu	37	chr9	27949804	27949804	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ggtcagagaacatgcctgctTcaatagtgctgatgggattg	13	7	2	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	9	27949804	27949804	T	G	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.866	p.E289A	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	99	1	1	60	20	25	-	-	-	G	27949804	T	G	27949804	3	3	584	1	0	0	0	0	1	0	0	0	8871	1783	62	5	958	5	LINGO2	9	27949804	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09		27949804	113263627	18	52324										
TRPM6	0	genome.wustl.edu	37	chr9	77377167	77377167	+	Frame_Shift_Del	DEL	T	T	-													0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	acaagtggagggcaagcaggTttgccactttttcttgatgc							TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	9	77377167	77377167	T	-	DEL	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	frame_shift_del	c.4420	p.T1474fs	0.002	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	81	0	0	16	19	50	-	-	-	-	77377167	T	-	77377167	7	5	584	1	0	1	0	1	0	0	0	0	16686	1725	60	0	1704	0	TRPM6	9	77377167	Frame_Shift_Del	DEL	T	TCGA-BH-A1EN-01A-11D-A17G-09	49427363	77377167	63836264	19	52325										
ORM2	0	genome.wustl.edu	37	chr9	117092260	117092260	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	agatcccattgtgtgccaacCtagtaccggtgcccatcacc	8	15	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	9	117092260	117092260	C	T	SNP	ORM2	ENST00000431067	human	ensembl	69_37n	1	known	silent	c.76	p.L26	0.000	pfam_ApoM,pirsf_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM2	HGNC	ENSG00000228278	44	0	0	9	3	25	-	-	-	T	117092260	C	T	117092260	2	4	584	1	0	0	0	0	0	0	0	1	11341	680	24	4		4	ORM2	9	117092260	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	39715093	117092260	24121171	20	52326										
OBP2B	0	genome.wustl.edu	37	chr9	136083528	136083528	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ggaggggctcacaggcgctgTatttgccaggctcctccgtc	14	13	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	9	136083528	136083528	T	A	SNP	OBP2B	ENST00000372034	human	ensembl	69_37n	-1	known	missense	c.269	p.Y90F	0.224	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102	22	0	0	8	6	42.86	-	-	-	A	136083528	T	A	136083528	3	1	584	1	0	0	0	0	1	0	0	0	10884	1638	57	5	259	5	OBP2B	9	136083528	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09	18991268	136083528	5129903	21	52327										
EXPH5	0	genome.wustl.edu	37	chr11	108380596	108380596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	atagtcgataggtctgtataTagatattgcagacctgggac	11	6	1	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	11	108380596	108380596	T	C	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.5638	p.I1880V	0.614	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	30	0	0	13	12	48	-	-	-	C	108380596	T	C	108380596	3	2	584	1	0	0	0	0	1	0	0	0	5359	1406	49	5	335	5	EXPH5	11	108380596	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09		108380596	26625920	22	52328										
GRIN2B	0	genome.wustl.edu	37	chr12	13716419	13716419	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ttgtcctcactgatgtcataCaggttgcctgctttcttgca	8	11	3	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	12	13716419	13716419	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.3753	p.L1251	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	113	0	0	63	20	24.1	-	-	-	G	13716419	C	G	13716419	2	3	584	1	0	0	0	0	0	0	0	1	6831	465	17	4		4	GRIN2B	12	13716419	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		13716419	120135476	23	52329										
KIF5A	0	genome.wustl.edu	37	chr12	57966441	57966441	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	agcgaaaacgaattgctgagGtgctgaacgggctgatgaag	15	6	0	4			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	12	57966441	57966441	G	T	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	missense	c.1648	p.V550L	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	194	0	0	53	13	19.7	-	-	-	T	57966441	G	T	57966441	3	4	584	1	0	0	0	0	1	0	0	0	8357	1261	44	4	1706	4	KIF5A	12	57966441	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	44250022	57966441	75885454	24	52330										
YEATS4	0	genome.wustl.edu	37	chr12	69764730	69764730	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	acatctcgtcagctaacattAggagcctataagcatgaaac	7	10	2	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	12	69764730	69764730	A	C	SNP	YEATS4	ENST00000247843	human	ensembl	69_37n	1	known	missense	c.489	p.L163F	0.998	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337	57	0	0	24	31	56.36	-	-	-	C	69764730	A	C	69764730	3	2	584	1	0	0	0	0	1	0	0	0	17570	417	15	5	511	5	YEATS4	12	69764730	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09	11798289	69764730	64087165	25	52331										
MYO16	0	genome.wustl.edu	37	chr13	109779790	109779790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	gcagcagcctcccgtctccaCggaaacagcccccgcccaag	9	20	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	13	109779790	109779790	C	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.3877	p.R1293W	0.997	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	16	0	0	14	7	33.33	-	-	-	T	109779790	C	T	109779790	3	4	584	1	0	0	0	0	1	0	0	0	10136	527	19	1	3995	1	MYO16	13	109779790	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		109779790	5390088	26	52332										
TRMT5	0	genome.wustl.edu	37	chr14	61446282	61446282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	caatgctgccctttttagggAtcgcatcaatttactgacta	7	10	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	14	61446282	61446282	A	G	SNP	TRMT5	ENST00000261249	human	ensembl	69_37n	-1	known	missense	c.334	p.S112P	1.000	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT5	HGNC	ENSG00000126814	55	0	0	39	13	24.53	-	-	-	G	61446282	A	G	61446282	3	3	584	1	0	0	0	0	1	0	0	0	16663	333	12	5	1211	5	TRMT5	14	61446282	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09		61446282	45903258	27	52333										
EML5	0	genome.wustl.edu	37	chr14	89205341	89205341	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	aagccttcttcacaagcattCatgctaaaaattcctgccta	4	12	3	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	14	89205341	89205341	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.729	p.M243I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	22	0	0	43	13	23.21	-	-	-	T	89205341	C	T	89205341	3	4	584	1	0	0	0	0	1	0	0	0	5137	826	29	2	5356	2	EML5	14	89205341	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	27759059	89205341	18144199	28	52334										
MYO5A	0	genome.wustl.edu	37	chr15	52667640	52667640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tggttgctgccttggttctgCgcagaaacttagcatagctg	12	9	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	15	52667640	52667640	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.2438	p.R813H	1.000	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	51	0	0	45	15	25	-	-	-	T	52667640	C	T	52667640	3	4	584	1	0	0	0	0	1	0	0	0	10150	768	27	1	3217	1	MYO5A	15	52667640	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		52667640	49863752	29	52335										
TCF12	0	genome.wustl.edu	37	chr15	57458613	57458613	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tttataggaaaaacatcagaGagaggctcattttccctgta	8	7	2	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	15	57458613	57458613	G	T	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.339	p.E113D	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	42	0	0	37	5	11.9	-	-	-	T	57458613	G	T	57458613	3	4	584	1	0	0	0	0	1	0	0	0	15782	933	33	2	357	2	TCF12	15	57458613	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	4790973	57458613	45072779	30	52336										
RORA	0	genome.wustl.edu	37	chr15	60789700	60789700	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	caaattctgaagtgaacaacTccttgtataatggaggaaaa	8	6	1	2			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	15	60789700	60789700	T	G	SNP	RORA	ENST00000261523	human	ensembl	69_37n	-1	known	missense	c.1625	p.E542A	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667	89	0	0	42	16	27.59	-	-	-	G	60789700	T	G	60789700	3	3	584	1	0	0	0	0	1	0	0	0	13614	1551	54	5	49	5	RORA	15	60789700	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09	3331087	60789700	41741692	31	52337										
FAM57A	0	genome.wustl.edu	37	chr17	644619	644619	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tcctttcctgccggatccttCtcttccccttcatgtactgg	6	16	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	17	644619	644619	C	T	SNP	FAM57A	ENST00000308278	human	ensembl	69_37n	1	known	missense	c.583	p.L195F	0.678	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57A	HGNC	ENSG00000167695	121	0	0	47	14	22.95	-	-	-	T	644619	C	T	644619	3	4	584	1	0	0	0	0	1	0	0	0	5633	913	32	2	601	2	FAM57A	17	644619	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		644619	80550591	32	52338										
MYH8	0	genome.wustl.edu	37	chr17	10312698	10312698	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	attcagggggtccttattttTgtccagccagccagtaatgt	10	9	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	17	10312698	10312698	T	C	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.1795	p.K599E	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	129	0	0	75	16	17.58	-	-	-	C	10312698	T	C	10312698	3	2	584	1	0	0	0	0	1	0	0	0	10113	1821	63	5	4118	5	MYH8	17	10312698	Missense_Mutation	SNP	T	TCGA-BH-A1EN-01A-11D-A17G-09	9668079	10312698	70882512	33	52339										
STK11	0	genome.wustl.edu	37	chr19	1207090	1207091	+	Frame_Shift_Ins	INS	-	-	A													0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	cctgctgggggaaggctcttINSacggcaaggtgaaggaggtg							TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	19	1207090	1207091	-	A	INS	STK11	ENST00000326873	human	ensembl	69_37n	1	known	frame_shift_ins	c.178_179	p.Y60fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK11	HGNC	ENSG00000118046	12	0	0	18	12	40	-	-	-	A	1207091	-	A	1207090	7	5	584	1	0	1	1	0	0	0	0	0	15378	1754	61	0	180	0	STK11	19	1207090	Frame_Shift_Ins	INS	-	TCGA-BH-A1EN-01A-11D-A17G-09		1207090	57921893	34	52340										
BTBD3	0	genome.wustl.edu	37	chr20	11904104	11904104	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tccagcaatacctttcccgtAtggtttgaatacccagtgca	7	12	0	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	20	11904104	11904104	A	G	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	silent	c.1359	p.V453	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	81	0	0	42	33	44	-	-	-	G	11904104	A	G	11904104	2	3	584	1	0	0	0	0	0	0	0	1	1553	436	16	5		5	BTBD3	20	11904104	Silent	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09		11904104	51121416	35	52341										
SEL1L2	0	genome.wustl.edu	37	chr20	13894469	13894469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ttctttagccaaggactcatAtaattggatagctgctgtta	8	7	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	20	13894469	13894469	A	C	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	missense	c.508	p.Y170D	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	106	0	0	80	23	22.33	-	-	-	C	13894469	A	C	13894469	3	2	584	1	0	0	0	0	1	0	0	0	14099	449	16	5	1622	5	SEL1L2	20	13894469	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09	1990365	13894469	49131051	36	52342										
TSHZ2	0	genome.wustl.edu	37	chr20	51871632	51871632	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	agtgcctaccccagcatccaCgcagcctaccagctgtctga	8	17	1	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	20	51871632	51871632	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	silent	c.1635	p.H545	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	25	0	0	10	11	52.38	-	-	-	T	51871632	C	T	51871632	2	4	584	1	0	0	0	0	0	0	0	1	16720	535	19	1		1	TSHZ2	20	51871632	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	37977163	51871632	11153888	37	52343										
TBX1	0	genome.wustl.edu	37	chr22	19770438	19770438	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ccctctcctggactccagggCtggtcacagaaggctctggg	13	14	3	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	22	19770438	19770438	C	A	SNP	TBX1	ENST00000359500	human	ensembl	69_37n	1	known	missense	c.1012	p.L338M	0.002	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058	28	0	0	47	10	17.54	-	-	-	A	19770438	C	A	19770438	3	1	584	1	0	0	0	0	1	0	0	0	15745	796	28	4	1717	4	TBX1	22	19770438	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09		19770438	31534128	38	52344										
TPST2	0	genome.wustl.edu	37	chr22	26936814	26936814	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tcatggtggaggacagcgtcGctccaggcgatgccgaggaa	16	10	1	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	22	26936814	26936814	G	A	SNP	TPST2	ENST00000338754	human	ensembl	69_37n	-1	known	silent	c.783	p.S261	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	TPST2	HGNC	ENSG00000128294	49	0	0	13	7	35	-	-	-	A	26936814	G	A	26936814	2	1	584	1	0	0	0	0	0	0	0	1	16524	1078	38	1		1	TPST2	22	26936814	Silent	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	7166376	26936814	24367752	39	52345										
PRDX4	0	genome.wustl.edu	37	chrX	23697375	23697375	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	atctcaaaggactatggtgtAtacctagaggactcaggcca	10	9	2	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	X	23697375	23697375	A	G	SNP	PRDX4	ENST00000439422	human	ensembl	69_37n	1	known	missense	c.202	p.I68V	0.249	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRDX4	HGNC	ENSG00000123131	96	0	0	52	14	21.21	-	-	-	G	23697375	A	G	23697375	3	3	584	1	0	0	0	0	1	0	0	0	12548	436	16	5	584	5	PRDX4	23	23697375	Missense_Mutation	SNP	A	TCGA-BH-A1EN-01A-11D-A17G-09		23697375	131573185	40	52346										
SYTL4	0	genome.wustl.edu	37	chrX	99956630	99956630	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	tgttggctgcccctcttggcCcctttcctttttatctccag	7	15	2	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	X	99956630	99956630	C	T	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	silent	c.150	p.G50	0.998	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	101	0	0	44	9	16.98	-	-	-	T	99956630	C	T	99956630	2	4	584	1	0	0	0	0	0	0	0	1	15577	610	22	4		4	SYTL4	23	99956630	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	76259255	99956630	55313930	41	52347										
HAUS7	0	genome.wustl.edu	37	chrX	152728092	152728092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	aggagctcctggtcatctggCgcacacagcatcagctcgtg	12	13	3	0			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	X	152728092	152728092	C	T	SNP	HAUS7	ENST00000370212	human	ensembl	69_37n	-1	known	silent	c.360	p.A120	0.004	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397	68	0	0	47	15	24.19	-	-	-	T	152728092	C	T	152728092	2	4	584	1	0	0	0	0	0	0	0	1	7022	755	27	1		1	HAUS7	23	152728092	Silent	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	52771462	152728092	2542468	42	52348										
PLXNB3	0	genome.wustl.edu	37	chrX	153032507	153032507	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	ggcgcagtgaaccgcctcttCcagctcagccccgagctgca	11	17	2	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	X	153032507	153032507	C	G	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	missense	c.294	p.F98L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	14	0	0	25	8	24.24	-	-	-	G	153032507	C	G	153032507	3	3	584	1	0	0	0	0	1	0	0	0	12199	854	30	2	349	2	PLXNB3	23	153032507	Missense_Mutation	SNP	C	TCGA-BH-A1EN-01A-11D-A17G-09	304415	153032507	2238053	43	52349										
AVPR2	0	genome.wustl.edu	37	chrX	153172076	153172076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	4	0.717192094940043	1.29454545454545	1.34848484848485	1.27751196172249	0.523809523809524	1	0	cagcgtgtcctcagagctgcGaagcttgctctgctgtgccc	12	14	2	1			TCGA-BH-A1EN-01A-11D-A17G-09	TCGA-BH-A1EN-11A-23W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca100ef0-be45-415f-909d-7172261d0084	ac317f91-d40e-4c6c-bca4-9220150a5af9	X	153172076	153172076	G	A	SNP	AVPR2	ENST00000337474	human	ensembl	69_37n	1	known	missense	c.1010	p.R337Q	0.183	prints_Vprsn_rcpt_V2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895	45	0	0	19	4	17.39	-	-	-	A	153172076	G	A	153172076	3	1	584	1	0	0	0	0	1	0	0	0	1237	1058	37	1	1040	1	AVPR2	23	153172076	Missense_Mutation	SNP	G	TCGA-BH-A1EN-01A-11D-A17G-09	139569	153172076	2098484	44	52350										
ARID1A	0	genome.wustl.edu	37	chr1	27057934	27057934	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	cacagcagcacccccagagcCagcccccctactcacagcca	6	22	1	1			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	1	27057934	27057934	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.1642	p.Q548*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	234	0	0	140	107	43.32	-	-	-	T	27057934	C	T	27057934	4	4	585	1	0	0	0	0	0	1	0	0	915	595	21	4	1652	4	ARID1A	1	27057934	Nonsense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09		27057934	222192687	1	52351										
AKT3	0	genome.wustl.edu	37	chr1	243828162	243828162	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	aaatgtgtttggctttggtcGttctgttttcattaactggc	10	6	2	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	1	243828162	243828162	G	A	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	nonsense	c.196	p.R66*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	311	0	0	232	178	43.41	-	-	-	A	243828162	G	A	243828162	4	1	585	1	0	0	0	0	0	1	0	0	481	1153	40	1	1335	1	AKT3	1	243828162	Nonsense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09	216770228	243828162	5422459	2	52352										
ITPR1	0	genome.wustl.edu	37	chr3	4854831	4854831	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ccttctctctcccagaaaccGgcgagagtttggcaagcgag	11	13	2	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	3	4854831	4854831	G	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.7429	p.G2477C	0.110	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	209	0	0	187	32	14.61	-	-	-	T	4854831	G	T	4854831	3	4	585	1	0	0	0	0	1	0	0	0	7974	1116	39	3	7692	3	ITPR1	3	4854831	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		4854831	193167599	3	52353										
COL6A6	0	genome.wustl.edu	37	chr3	130285633	130285633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	agatttccatgaaatgaagaCgttcctgtcagaggtggtag	12	6	1	5			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	3	130285633	130285633	C	T	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.1370	p.T457M	0.686	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	132	0	0	77	64	45.07	-	-	-	T	130285633	C	T	130285633	3	4	585	1	0	0	0	0	1	0	0	0	3733	536	19	1	1384	1	COL6A6	3	130285633	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09	125430802	130285633	67736797	4	52354										
ASB5	0	genome.wustl.edu	37	chr4	177138077	177138077	+	Frame_Shift_Del	DEL	G	G	-													0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	atctgctccaaattctagcaGtaagtttacaatttctgtgc							TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	4	177138077	177138077	G	-	DEL	ASB5	ENST00000296525	human	ensembl	69_37n	-1	known	frame_shift_del	c.754	p.L252fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB5	HGNC	ENSG00000164122	327	0	0	248	59	19.16	-	-	-	-	177138077	G	-	177138077	7	5	585	1	0	1	0	1	0	0	0	0	1030	1020	36	0	243	0	ASB5	4	177138077	Frame_Shift_Del	DEL	G	TCGA-BH-A1EO-01A-11D-A135-09		177138077	14016199	5	52355										
SLC6A7	0	genome.wustl.edu	37	chr5	149588999	149588999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	aggccagccggccggccatgGactggggaccatcgctggag	17	13	0	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	5	149588999	149588999	G	A	SNP	SLC6A7	ENST00000230671	human	ensembl	69_37n	1	known	missense	c.1732	p.D578N	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	22	0	0	14	7	33.33	-	-	-	A	149588999	G	A	149588999	3	1	585	1	0	0	0	0	1	0	0	0	14778	1174	41	2	1786	2	SLC6A7	5	149588999	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		149588999	31326261	6	52356										
TSPAN17	0	genome.wustl.edu	37	chr5	176078754	176078754	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	tgcctctgctgcccggcacaGggcgttctctcgaacatctc	10	16	3	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	5	176078754	176078754	G	A	SNP	TSPAN17	ENST00000310032	human	ensembl	69_37n	1	known	splice_site	c.139-1	e3-1	1.000	-	-	-	no_errors	TSPAN17	HGNC	ENSG00000048140	179	1	0.56	195	27	12.11	-	-	-	A	176078754	G	A	176078754	5	1	585	1	0	0	0	0	0	0	1	0	16737	1014	35	4	148	4	TSPAN17	5	176078754	Splice_Site	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09	26489755	176078754	4836506	7	52357										
RUFY1	0	genome.wustl.edu	37	chr5	178994480	178994481	+	Frame_Shift_Ins	INS	-	-	CGAG													0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ggacagctgtgggaagaggcINScgagcgtggctttatcttgc							TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	5	178994480	178994481	-	CGAG	INS	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	frame_shift_ins	c.621_622	p.W209fs	0.998:0.998	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	237	0	0	214	77	26.46	-	-	-	CGAG	178994481	-	CGAG	178994480	7	5	585	1	0	1	1	0	0	0	0	0	13824	726	26	0	635	0	RUFY1	5	178994480	Frame_Shift_Ins	INS	-	TCGA-BH-A1EO-01A-11D-A135-09	2915726	178994480	1920780	8	52358										
FLNC	0	genome.wustl.edu	37	chr7	128494721	128494721	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gcacagggctggagcgaggtGtggccggcgtgccaggtaag	20	9	0	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	7	128494721	128494721	G	T	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.6982	p.V2328L	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	25	0	0	18	9	33.33	-	-	-	T	128494721	G	T	128494721	3	4	585	1	0	0	0	0	1	0	0	0	5981	1377	48	4	7144	4	FLNC	7	128494721	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		128494721	30643942	9	52359										
CDK5	0	genome.wustl.edu	37	chr7	150752460	150752460	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gcggtaccacagtgtgaccaCctggaggagaccccccccga	12	16	0	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	7	150752460	150752460	C	A	SNP	CDK5	ENST00000485972	human	ensembl	69_37n	-1	known	missense	c.484	p.V162L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CDK5	HGNC	ENSG00000164885	77	0	0	57	39	40.62	-	-	-	A	150752460	C	A	150752460	3	1	585	1	0	0	0	0	1	0	0	0	3171	521	18	4	414	4	CDK5	7	150752460	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09	22257739	150752460	8386203	10	52360										
DMRTA1	0	genome.wustl.edu	37	chr9	22451851	22451851	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gagattcttcctacctttccAgtaaagactcaataacttgt	5	10	2	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	9	22451851	22451851	A	T	SNP	DMRTA1	ENST00000325870	human	ensembl	69_37n	1	known	missense	c.1456	p.S486C	1.000	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTA1	HGNC	ENSG00000176399	125	0	0	101	25	19.69	-	-	-	T	22451851	A	T	22451851	3	4	585	1	0	0	0	0	1	0	0	0	4624	188	7	5	1462	5	DMRTA1	9	22451851	Missense_Mutation	SNP	A	TCGA-BH-A1EO-01A-11D-A135-09		22451851	118761580	11	52361										
NFE2	0	genome.wustl.edu	37	chr12	54686775	54686775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	catctctacatattcgctgcGccgccgaccagcctctgtcc	7	18	2	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	12	54686775	54686775	G	A	SNP	NFE2	ENST00000312156	human	ensembl	69_37n	-1	known	missense	c.505	p.R169C	0.731	NULL	pfam_bZIP_1,pfam_bZIP_2,pfam_bZIP_Maf,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405	93	0	0	53	40	41.24	-	-	-	A	54686775	G	A	54686775	3	1	585	1	0	0	0	0	1	0	0	0	10438	1087	38	1	620	1	NFE2	12	54686775	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		54686775	79165120	12	52362										
NAV3	0	genome.wustl.edu	37	chr12	78225321	78225321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gcatactgctcttccgatacCaaatcttggcactactgggt	8	12	2	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	12	78225321	78225321	C	G	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.80	p.P27R	1.000	superfamily_CH-domain	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	172	0	0	68	52	43.33	-	-	-	G	78225321	C	G	78225321	3	3	585	1	0	0	0	0	1	0	0	0	10257	594	21	4	82	4	NAV3	12	78225321	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09	23538546	78225321	55626574	13	52363										
POLR3B	0	genome.wustl.edu	37	chr12	106850925	106850925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	tttcattttaggctttgggcGttgccttgtatataaaaatg	9	5	1	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	12	106850925	106850925	G	A	SNP	POLR3B	ENST00000228347	human	ensembl	69_37n	1	known	missense	c.2303	p.R768H	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503	436	0	0	239	66	21.64	-	-	-	A	106850925	G	A	106850925	3	1	585	1	0	0	0	0	1	0	0	0	12303	1145	40	1	2385	1	POLR3B	12	106850925	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09	28625604	106850925	27000970	14	52364										
ARHGEF7	0	genome.wustl.edu	37	chr13	111927898	111927898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ggcccaatgtcaagaagtccGgaagaggaaagagcttgagc	14	8	1	4			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	13	111927898	111927898	G	A	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	missense	c.1355	p.R452Q	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	150	0	0	146	26	15.12	-	-	-	A	111927898	G	A	111927898	3	1	585	1	0	0	0	0	1	0	0	0	913	1116	39	1	1405	1	ARHGEF7	13	111927898	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		111927898	3241980	15	52365										
PNMA1	0	genome.wustl.edu	37	chr14	74179741	74179741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ctctaagactctccatcaacCgccgcctcttttctacatcg	4	17	5	1			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	14	74179741	74179741	C	T	SNP	PNMA1	ENST00000316836	human	ensembl	69_37n	-1	known	missense	c.602	p.R201Q	0.998	superfamily_Globin-like	superfamily_Globin-like	-	no_errors	PNMA1	HGNC	ENSG00000176903	13	0	0	10	12	54.55	-	-	-	T	74179741	C	T	74179741	3	4	585	1	0	0	0	0	1	0	0	0	12227	652	23	1	463	1	PNMA1	14	74179741	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09		74179741	33169799	16	52366										
DET1	0	genome.wustl.edu	37	chr15	89074906	89074906	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	attttggttttggattcttcGaggcttgatggtagaaacat	11	4	1	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	15	89074906	89074906	G	A	SNP	DET1	ENST00000444300	human	ensembl	69_37n	-1	known	nonsense	c.64	p.R22*	1.000	NULL	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	185	0	0	104	34	24.64	-	-	-	A	89074906	G	A	89074906	4	1	585	1	0	0	0	0	0	1	0	0	4486	1066	37	1	1637	1	DET1	15	89074906	Nonsense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		89074906	13456486	17	52367										
FANCA	0	genome.wustl.edu	37	chr16	89818569	89818569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	caatctggaaataatatcctCatttcctgtgcggccaccaa	6	12	2	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	16	89818569	89818569	C	T	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.3043	p.E1015K	0.000	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	126	0	0	58	47	44.76	-	-	-	T	89818569	C	T	89818569	3	4	585	1	0	0	0	0	1	0	0	0	5708	835	29	2	1376	2	FANCA	16	89818569	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09		89818569	536184	18	52368										
PLEKHM1	0	genome.wustl.edu	37	chr17	43531287	43531287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gcgcctcggggggttcctcaGgctggtctgggtactgcacg	17	12	2	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	17	43531287	43531287	G	A	SNP	PLEKHM1	ENST00000430334	human	ensembl	69_37n	-1	known	missense	c.1931	p.P644L	0.000	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	19	0	0	22	8	26.67	-	-	-	A	43531287	G	A	43531287	3	1	585	1	0	0	0	0	1	0	0	0	12154	1000	35	4	1263	4	PLEKHM1	17	43531287	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		43531287	37663923	19	52369										
CDH7	0	genome.wustl.edu	37	chr18	63547856	63547856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	agaaattcaattcctgagtcGaccagcttttaaaagcatcc	6	10	1	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	18	63547856	63547856	G	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	missense	c.2084	p.R695Q	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	194	0	0	80	55	40.74	-	-	-	A	63547856	G	A	63547856	3	1	585	1	0	0	0	0	1	0	0	0	3144	1058	37	1	2126	1	CDH7	18	63547856	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		63547856	14529392	20	52370										
TYK2	0	genome.wustl.edu	37	chr19	10475348	10475348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	cagccgtgggggagccacctCgtggcacaggtagtggctgg	18	11	0	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	19	10475348	10475348	C	T	SNP	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	missense	c.1309	p.E437K	0.986	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	20	0	0	16	7	30.43	-	-	-	T	10475348	C	T	10475348	3	4	585	1	0	0	0	0	1	0	0	0	16907	893	31	1	2322	1	TYK2	19	10475348	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09		10475348	48653635	21	52371										
AP2A1	0	genome.wustl.edu	37	chr19	50302640	50302640	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gggccagttcctgcagcaccGggagaccaacctgcgctacc	12	16	0	1			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	19	50302640	50302640	G	C	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	missense	c.1022	p.R341P	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	15	0	0	10	7	41.18	-	-	-	C	50302640	G	C	50302640	3	2	585	1	0	0	0	0	1	0	0	0	740	1116	39	3	1056	3	AP2A1	19	50302640	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09	39827292	50302640	8826343	22	52372										
ZNF577	0	genome.wustl.edu	37	chr19	52381767	52381767	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	catcttcgaatgacaatgacCcctataataacaattccaat	3	11	1	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	19	52381767	52381767	C	A	SNP	ZNF577	ENST00000301399	human	ensembl	69_37n	-1	known	missense	c.62	p.G21V	0.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	173	0	0	136	59	30.26	-	-	-	A	52381767	C	A	52381767	3	1	585	1	0	0	0	0	1	0	0	0	18105	637	22	4	1407	4	ZNF577	19	52381767	Missense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09	2079127	52381767	6747216	23	52373										
ZNF831	0	genome.wustl.edu	37	chr20	57782030	57782030	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ttcgcacaccaacctgggtgCgaagaagaagccgccaccct	10	15	0	2			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	20	57782030	57782030	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	nonsense	c.3946	p.R1316*	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	66	0	0	56	27	32.14	-	-	-	T	57782030	C	T	57782030	4	4	585	1	0	0	0	0	0	1	0	0	18278	760	27	1	3956	1	ZNF831	20	57782030	Nonsense_Mutation	SNP	C	TCGA-BH-A1EO-01A-11D-A135-09		57782030	5243490	24	52374										
DIP2A	0	genome.wustl.edu	37	chr21	47974150	47974150	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	gagagagtggccgcggctctGatggagaagggaagactgag	19	6	1	5			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	21	47974150	47974150	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	silent	c.3102	p.L1034	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	97	0	0	81	23	22.12	-	-	-	A	47974150	G	A	47974150	2	1	585	1	0	0	0	0	0	0	0	1	4563	1277	45	2		2	DIP2A	21	47974150	Silent	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		47974150	155745	25	52375										
TEX13A	0	genome.wustl.edu	37	chrX	104464131	104464131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	ttcctgatcagcatctccaaGgagctgcaggaggattctct	10	11	3	1			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	X	104464131	104464131	G	A	SNP	TEX13A	ENST00000413579	human	ensembl	69_37n	-1	known	missense	c.745	p.L249F	0.000	NULL	pfam_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	TEX13A	HGNC	ENSG00000133149	150	0	0	133	57	30	-	-	-	A	104464131	G	A	104464131	3	1	585	1	0	0	0	0	1	0	0	0	15871	987	35	4	488	4	TEX13A	23	104464131	Missense_Mutation	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09		104464131	50806429	26	52376										
ODZ1	0	genome.wustl.edu	37	chrX	123554340	123554340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.951642479773168	0.848484848484849	0	0.942760942760943	0.333333333333333	0.930327025915261	0	acaagccatagcggcattccGcctgcatcacggcgaatgtg	11	13	1	0			TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20131381-8a11-425d-8954-980e6ec7c427	cb2284f3-6d08-40ec-bf36-dfa349354c59	X	123554340	123554340	G	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.4803	p.G1601	0.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	132	0	0	132	25	15.82	-	-	-	A	123554340	G	A	123554340	2	1	585	1	0	0	0	0	0	0	0	1	10907	1074	38	1		1	ODZ1	23	123554340	Silent	SNP	G	TCGA-BH-A1EO-01A-11D-A135-09	19090209	123554340	31716220	27	52377										
PRAMEF7	0	genome.wustl.edu	37	chr1	12980075	12980075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	agagttatgacacccagggtGctctctgctgggggagattt	14	8	1	3			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	12980075	12980075	G	T	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	1	known	missense	c.1267	p.A423S	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	135	0	0	80	68	45.95	-	-	-	T	12980075	G	T	12980075	3	4	586	1	0	0	0	0	1	0	0	0	12519	1319	46	4	1277	4	PRAMEF7	1	12980075	Missense_Mutation	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09		12980075	236270546	1	52378										
NASP	0	genome.wustl.edu	37	chr1	46073222	46073222	+	Frame_Shift_Del	DEL	A	A	-													0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	actgaaacctctgaagaggcAaaaggaggagcagcaccaga							TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	46073222	46073222	A	-	DEL	NASP	ENST00000402363	human	ensembl	69_37n	1	known	frame_shift_del	c.645	p.G217fs	0.076	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780	77	0	0	61	34	35.79	-	-	-	-	46073222	A	-	46073222	7	5	586	1	0	1	0	1	0	0	0	0	10244	117	5	0	738	0	NASP	1	46073222	Frame_Shift_Del	DEL	A	TCGA-BH-A1ES-01A-11D-A135-09	33093147	46073222	203177399	2	52379										
IGSF3	0	genome.wustl.edu	37	chr1	117127361	117127361	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	ggcagccactcctccacatgGcagctgtaggtcccgctgtc	11	16	0	0			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	117127361	117127361	G	T	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	nonsense	c.2814	p.C938*	1.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	51	0	0	39	14	26.42	-	-	-	T	117127361	G	T	117127361	4	4	586	1	0	0	0	0	0	1	0	0	7655	1195	42	4	842	4	IGSF3	1	117127361	Nonsense_Mutation	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09	71054139	117127361	132123260	3	52380										
CDS1	0	genome.wustl.edu	37	chr4	85530598	85530598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	gtaggtggaaaaactggtggAtacgtggaattctcactcta	12	6	2	0			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	4	85530598	85530598	A	G	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	1	known	missense	c.262	p.I88V	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	619	0	0	347	250	41.88	-	-	-	G	85530598	A	G	85530598	3	3	586	1	0	0	0	0	1	0	0	0	3206	333	12	5	272	5	CDS1	4	85530598	Missense_Mutation	SNP	A	TCGA-BH-A1ES-01A-11D-A135-09		85530598	105623678	4	52381										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	41	0	0	34	5	12.82	-	-	-	-	150884268	AG	-	150884267	7	5	586	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-BH-A1ES-01A-11D-A135-09		150884267	8254396	5	52382										
MLL3	0	genome.wustl.edu	37	chr7	151859912	151859912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	aatgagcgattgggttgatcCcggataactgtgtccatggg	14	7	0	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	7	151859912	151859912	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.10750	p.G3584R	0.963	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	226	0	0	163	49	23.11	-	-	-	T	151859912	C	T	151859912	3	4	586	1	0	0	0	0	1	0	0	0	9693	632	22	4	4053	4	MLL3	7	151859912	Missense_Mutation	SNP	C	TCGA-BH-A1ES-01A-11D-A135-09	975645	151859912	7278751	6	52383										
FDFT1	0	genome.wustl.edu	37	chr8	11679310	11679310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	aataccaaacagtgattgccGacatttgccggagaatgggc	11	9	0	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	8	11679310	11679310	G	A	SNP	FDFT1	ENST00000220584	human	ensembl	69_37n	1	known	missense	c.433	p.D145N	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	-	no_errors	FDFT1	HGNC	ENSG00000079459	472	0	0	254	44	14.72	-	-	-	A	11679310	G	A	11679310	3	1	586	1	0	0	0	0	1	0	0	0	5848	1058	37	1	447	1	FDFT1	8	11679310	Missense_Mutation	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09		11679310	134684712	7	52384										
MAPKAP1	0	genome.wustl.edu	37	chr9	128347966	128347966	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	ggctcgagtgcagagggaggTagacatcgatcttcttggtt	15	7	2	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	9	128347966	128347966	T	C	SNP	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	missense	c.539	p.Y180C	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	124	0	0	63	11	14.67	-	-	-	C	128347966	T	C	128347966	3	2	586	1	0	0	0	0	1	0	0	0	9359	1638	57	5	1079	5	MAPKAP1	9	128347966	Missense_Mutation	SNP	T	TCGA-BH-A1ES-01A-11D-A135-09		128347966	12865465	8	52385										
VDAC2	0	genome.wustl.edu	37	chr10	76979101	76979101	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	tgacatttgatactaccttcTcaccaaacacagggtaagca	6	11	1	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	10	76979101	76979101	T	A	SNP	VDAC2	ENST00000313132	human	ensembl	69_37n	1	known	missense	c.388	p.S130T	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC2	HGNC	ENSG00000165637	212	0	0	120	40	25	-	-	-	A	76979101	T	A	76979101	3	1	586	1	0	0	0	0	1	0	0	0	17244	1551	54	5	441	5	VDAC2	10	76979101	Missense_Mutation	SNP	T	TCGA-BH-A1ES-01A-11D-A135-09		76979101	58555646	9	52386										
ZC3H13	0	genome.wustl.edu	37	chr13	46616352	46616352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	tttctggggctcagtgtccaCgtcttggcgcttgttcttca	11	11	5	0			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	13	46616352	46616352	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.286	p.V96L	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	309	0	0	341	123	26.51	-	-	-	A	46616352	C	A	46616352	3	1	586	1	0	0	0	0	1	0	0	0	17661	536	19	3	4464	3	ZC3H13	13	46616352	Missense_Mutation	SNP	C	TCGA-BH-A1ES-01A-11D-A135-09		46616352	68553526	10	52387										
TM9SF2	0	genome.wustl.edu	37	chr13	100190011	100190011	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	agtcagatttccatgaaagaGatacattttacatcttcaac	5	8	3	3			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	13	100190011	100190011	G	C	SNP	TM9SF2	ENST00000376387	human	ensembl	69_37n	1	known	missense	c.610	p.D204H	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304	170	0	0	169	31	15.5	-	-	-	C	100190011	G	C	100190011	3	2	586	1	0	0	0	0	1	0	0	0	16073	942	33	2	632	2	TM9SF2	13	100190011	Missense_Mutation	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09	53573659	100190011	14979867	11	52388										
PLA2G4E	0	genome.wustl.edu	37	chr15	42292345	42292345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	gcacttccacgtgcacctggGactggaagtacttggggtag	14	10	0	0			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	15	42292345	42292345	G	T	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	missense	c.722	p.S241Y	0.978	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	202	0	0	119	25	17.36	-	-	-	T	42292345	G	T	42292345	3	4	586	1	0	0	0	0	1	0	0	0	12079	1174	41	2	1849	2	PLA2G4E	15	42292345	Missense_Mutation	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09		42292345	60239047	12	52389										
IQCH	0	genome.wustl.edu	37	chr15	67664804	67664804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	caagggccaagatggaaattCggaggccgccatgaagatcc	13	10	0	3			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	15	67664804	67664804	C	T	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	1	known	missense	c.1109	p.S370L	0.000	pfscan_IQ_motif_EF-hand-BS	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	61	0	0	44	15	24.19	-	-	-	T	67664804	C	T	67664804	3	4	586	1	0	0	0	0	1	0	0	0	7865	893	31	1	1271	1	IQCH	15	67664804	Missense_Mutation	SNP	C	TCGA-BH-A1ES-01A-11D-A135-09	25372459	67664804	34866588	13	52390										
COTL1	0	genome.wustl.edu	37	chr16	84600388	84600388	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	ggctagtagctgaggccggcGgtcctctcccccggggagca	16	14	1	1			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	16	84600388	84600388	G	A	SNP	COTL1	ENST00000567278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	COTL1	HGNC	ENSG00000103187	74	0	0	64	14	17.95	-	-	-	A	84600388	G	A	84600388	1	1	586	0	1	0	0	0	0	0	0	0	3791	1131	39	1		1	COTL1	16	84600388	RNA	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09		84600388	5754365	14	52391										
C17orf49	0	genome.wustl.edu	37	chr17	6920583	6920583	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	cttcctgttccagacagcctGaccctggattctggccttct	8	15	2	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	17	6920583	6920583	G	A	SNP	C17orf49	ENST00000546495	human	ensembl	69_37n	1	known	silent	c.522	p.L174	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	C17orf49	Clone_based_vega_gene	ENSG00000258315	385	0	0	169	65	27.66	-	-	-	A	6920583	G	A	6920583	2	1	586	1	0	0	0	0	0	0	0	1	1875	1285	45	2		2	C17orf49	17	6920583	Silent	SNP	G	TCGA-BH-A1ES-01A-11D-A135-09		6920583	74274627	15	52392										
MAST1	0	genome.wustl.edu	37	chr19	12976829	12976829	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	tgaagcagcacagtttctttCgagacctggactggacaggg	13	9	1	2			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	19	12976829	12976829	C	T	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	nonsense	c.1942	p.R648*	0.595	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	122	0	0	81	13	13.83	-	-	-	T	12976829	C	T	12976829	4	4	586	1	0	0	0	0	0	1	0	0	9395	876	31	1	2008	1	MAST1	19	12976829	Nonsense_Mutation	SNP	C	TCGA-BH-A1ES-01A-11D-A135-09		12976829	46152154	16	52393										
CRNKL1	0	genome.wustl.edu	37	chr20	20023120	20023120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	2	0.61360799955188	1.87790697674419	7.51162790697674	1.07308970099668	1	1	0	ctgcgtcactttctaccaagCgcaagtaatcaaaccatgca	6	13	3	0			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	20	20023120	20023120	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1496	p.R499H	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	203	0	0	188	25	11.68	-	-	-	T	20023120	C	T	20023120	3	4	586	1	0	0	0	0	1	0	0	0	3921	768	27	1	1078	1	CRNKL1	20	20023120	Missense_Mutation	SNP	C	TCGA-BH-A1ES-01A-11D-A135-09		20023120	43002400	17	52394										
ITLN1	0	genome.wustl.edu	37	chr1	160850420	160850420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	agatgctgttttctgggcgtCgccaaaatcatagaccacag	10	10	2	2			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	160850420	160850420	C	T	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	missense	c.643	p.D215N	0.962	superfamily_Fibrinogen_a/b/g_C	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	237	0	0	110	75	40.32	-	-	-	T	160850420	C	T	160850420	3	4	587	1	0	0	0	0	1	0	0	0	7964	884	31	1	310	1	ITLN1	1	160850420	Missense_Mutation	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09		160850420	88400201	1	52395										
ACTA1	0	genome.wustl.edu	37	chr1	229567787	229567787	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tccgggcagcggaagcgctcGttgccgatggtgatgacctg	16	11	0	2			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	229567787	229567787	G	T	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	missense	c.762	p.N254K	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	67	0	0	34	20	37.04	-	-	-	T	229567787	G	T	229567787	3	4	587	1	0	0	0	0	1	0	0	0	191	1136	40	3	383	3	ACTA1	1	229567787	Missense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09	68717367	229567787	19682834	2	52396										
LRIG1	0	genome.wustl.edu	37	chr3	66431242	66431242	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tgtcccctggagtaacagtcCacttcggtgttgcagtcact	10	12	1	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	66431242	66431242	C	T	SNP	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	silent	c.2814	p.V938	0.001	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	46	0	0	26	13	33.33	-	-	-	T	66431242	C	T	66431242	2	4	587	1	0	0	0	0	0	0	0	1	9010	581	21	4		4	LRIG1	3	66431242	Silent	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09		66431242	131591188	3	52397										
SOX14	0	genome.wustl.edu	37	chr3	137483952	137483952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	ggacccgctcaaggcggctgGcctgcccgtgggggcctccg	17	16	1	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	137483952	137483952	G	A	SNP	SOX14	ENST00000306087	human	ensembl	69_37n	1	known	missense	c.326	p.G109D	1.000	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX14	HGNC	ENSG00000168875	66	0	0	31	18	36	-	-	-	A	137483952	G	A	137483952	3	1	587	1	0	0	0	0	1	0	0	0	15034	1203	42	4	328	4	SOX14	3	137483952	Missense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09	71052710	137483952	60538478	4	52398										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	276	1	0.36	167	93	35.77	-	-	-	A	178936082	G	A	178936082	3	1	587	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09	41452130	178936082	19086348	5	52399										
PCDHB6	0	genome.wustl.edu	37	chr5	140532071	140532071	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	gcggcaccgggaccctatccCagagctaccagtacaaggtg	12	14	0	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	5	140532071	140532071	C	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.2233	p.Q745K	0.965	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	219	1	0.45	142	74	34.26	-	-	-	A	140532071	C	A	140532071	3	1	587	1	0	0	0	0	1	0	0	0	11619	595	21	4	2235	4	PCDHB6	5	140532071	Missense_Mutation	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09		140532071	40383189	6	52400										
NEDD9	0	genome.wustl.edu	37	chr6	11191135	11191135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tggtggctcaagaaactgaaCgcctcgggggacatcatatg	13	9	2	2			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	11191135	11191135	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.967	p.V323I	0.603	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	78	0	0	57	32	35.96	-	-	-	T	11191135	C	T	11191135	3	4	587	1	0	0	0	0	1	0	0	0	10385	536	19	1	1549	1	NEDD9	6	11191135	Missense_Mutation	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09		11191135	159923932	7	52401										
GPR63	0	genome.wustl.edu	37	chr6	97247418	97247418	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tggtgttgtgggcacagctgTactattcacggtcaaggaac	13	8	2	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	97247418	97247418	T	C	SNP	GPR63	ENST00000229955	human	ensembl	69_37n	-1	known	missense	c.190	p.T64A	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218	261	0	0	121	82	40.2	-	-	-	C	97247418	T	C	97247418	3	2	587	1	0	0	0	0	1	0	0	0	6754	1638	57	5	1073	5	GPR63	6	97247418	Missense_Mutation	SNP	T	TCGA-BH-A1ET-01A-11D-A135-09	86056283	97247418	73867649	8	52402										
PRKDC	0	genome.wustl.edu	37	chr8	48743255	48743255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	ccggtagcttctgtacagaaCgacctgggcatcctgcttca	10	13	2	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	48743255	48743255	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.8305	p.V2769I	0.995	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	145	0	0	74	40	35.09	-	-	-	T	48743255	C	T	48743255	3	4	587	1	0	0	0	0	1	0	0	0	12602	536	19	1	4182	1	PRKDC	8	48743255	Missense_Mutation	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09		48743255	97620767	9	52403										
FER1L6	0	genome.wustl.edu	37	chr8	125047696	125047696	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	atctaacctgctctaccaagGtagggtccccactgggcaaa	9	13	2	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125047696	125047696	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814	106	0	0	48	27	36	-	-	-	A	125047696	G	A	125047696	5	1	587	1	0	0	0	0	0	0	1	0	5861	1275	44	4	2535	4	FER1L6	8	125047696	Splice_Site	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09	76304441	125047696	21316326	10	52404										
FER1L6	0	genome.wustl.edu	37	chr8	125076805	125076805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	caggagccaccaaaagatggAaaacctaaggtcagactaaa	9	9	1	2			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125076805	125076805	A	G	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	silent	c.3546	p.G1182	0.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	182	0	0	80	44	35.48	-	-	-	G	125076805	A	G	125076805	2	3	587	1	0	0	0	0	0	0	0	1	5861	233	9	5		5	FER1L6	8	125076805	Silent	SNP	A	TCGA-BH-A1ET-01A-11D-A135-09	29109	125076805	21287217	11	52405										
MTPAP	0	genome.wustl.edu	37	chr10	30602780	30602780	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	taaaatccaggcactttctcGggccaaatctacaaattttt	5	10	2	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	10	30602780	30602780	G	A	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	nonsense	c.1897	p.R633*	0.999	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	203	0	0	136	40	22.73	-	-	-	A	30602780	G	A	30602780	4	1	587	1	0	0	0	0	0	1	0	0	10028	1124	39	1	245	1	MTPAP	10	30602780	Nonsense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09		30602780	104931967	12	52406										
KDM2A	0	genome.wustl.edu	37	chr11	67010479	67010479	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tcttttccctcctacccttaGattttgctggaggagcttgc	8	12	1	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	67010479	67010479	G	T	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	splice_site	c.1480-1	e12-1	0.999	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	730	0	0	416	161	27.9	-	-	-	T	67010479	G	T	67010479	5	4	587	1	0	0	0	0	0	0	1	0	8178	956	33	2	1525	2	KDM2A	11	67010479	Splice_Site	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09		67010479	67996037	13	52407										
UCP3	0	genome.wustl.edu	37	chr11	73717218	73717218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	ggacctggtcactcactgtcCgcgcctttgggggtgtacac	13	13	2	0			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	73717218	73717218	C	T	SNP	UCP3	ENST00000314032	human	ensembl	69_37n	-1	known	silent	c.333	p.A111	0.000	superfamily_Mt_carrier_dom,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	UCP3	HGNC	ENSG00000175564	42	0	0	28	15	34.88	-	-	-	T	73717218	C	T	73717218	2	4	587	1	0	0	0	0	0	0	0	1	17029	639	23	1		1	UCP3	11	73717218	Silent	SNP	C	TCGA-BH-A1ET-01A-11D-A135-09	6706739	73717218	61289298	14	52408										
ELMOD1	0	genome.wustl.edu	37	chr11	107518302	107518302	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	aaacagactttcgaggaatgGgacttctgggactgtacaat	11	7	1	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	107518302	107518302	G	C	SNP	ELMOD1	ENST00000265840	human	ensembl	69_37n	1	known	missense	c.529	p.G177R	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD1	HGNC	ENSG00000110675	483	0	0	281	114	28.79	-	-	-	C	107518302	G	C	107518302	3	2	587	1	0	0	0	0	1	0	0	0	5105	1233	43	4	551	4	ELMOD1	11	107518302	Missense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09	33801084	107518302	27488214	15	52409										
INHBE	0	genome.wustl.edu	37	chr12	57849486	57849486	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	gcaaatcctggatgggttgcAcctgaccagtcgtcccagaa	11	12	0	2			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	57849486	57849486	A	C	SNP	INHBE	ENST00000266646	human	ensembl	69_37n	1	known	missense	c.167	p.H56P	0.997	pfam_TGF-b_N,prints_Inhibin_betaC	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269	168	1	0.59	64	24	26.97	-	-	-	C	57849486	A	C	57849486	3	2	587	1	0	0	0	0	1	0	0	0	7798	159	6	5	169	5	INHBE	12	57849486	Missense_Mutation	SNP	A	TCGA-BH-A1ET-01A-11D-A135-09		57849486	76002409	16	52410										
DUSP6	0	genome.wustl.edu	37	chr12	89744753	89744753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	ctgctacacgagccgtctagAttggtctcgcaatgcaggga	12	11	2	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	89744753	89744753	A	G	SNP	DUSP6	ENST00000279488	human	ensembl	69_37n	-1	known	silent	c.450	p.N150	1.000	superfamily_Rhodanese-like_dom,pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP6	HGNC	ENSG00000139318	27	0	0	16	11	40.74	-	-	-	G	89744753	A	G	89744753	2	3	587	1	0	0	0	0	0	0	0	1	4864	330	12	5		5	DUSP6	12	89744753	Silent	SNP	A	TCGA-BH-A1ET-01A-11D-A135-09	31895267	89744753	44107142	17	52411										
HIF3A	0	genome.wustl.edu	37	chr19	46815779	46815779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.963229218204009	0.812121212121212	0	0.893333333333333	1	1	0	tcagtgctgagcaagggccaGgcagtaacagggcagtatcg	15	9	1	1			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	19	46815779	46815779	G	A	SNP	HIF3A	ENST00000472815	human	ensembl	69_37n	1	putative	missense	c.811	p.G271S	1.000	pfam_PAS_fold_3,pfam_PAS_fold,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HIF3A	HGNC	ENSG00000124440	77	0	0	48	21	30.43	-	-	-	A	46815779	G	A	46815779	3	1	587	1	0	0	0	0	1	0	0	0	7156	991	35	4	948	4	HIF3A	19	46815779	Missense_Mutation	SNP	G	TCGA-BH-A1ET-01A-11D-A135-09		46815779	12313204	18	52412										
FLG	0	genome.wustl.edu	37	chr1	152276139	152276139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	tgcctggagctgtctcgtgcCtgctcgtggcgggatccttg	15	12	1	0			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	1	152276139	152276139	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.11223	p.Q3741	0.009	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	496	3	0.6	509	134	20.81	-	-	-	T	152276139	C	T	152276139	2	4	588	1	0	0	0	0	0	0	0	1	5968	680	24	4		4	FLG	1	152276139	Silent	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09		152276139	96974482	1	52413										
CAD	0	genome.wustl.edu	37	chr2	27460602	27460602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	ccagctggcagaggctggcgCccggtgcgactttgcgctat	15	13	0	1			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	2	27460602	27460602	C	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.4580	p.A1527D	1.000	pfam_Amidohydro_1	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	72	0	0	50	18	26.09	-	-	-	A	27460602	C	A	27460602	3	1	588	1	0	0	0	0	1	0	0	0	2590	739	26	4	4694	4	CAD	2	27460602	Missense_Mutation	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09		27460602	215738771	2	52414										
CCR3	0	genome.wustl.edu	37	chr3	46307328	46307328	+	Frame_Shift_Del	DEL	C	C	-													0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	caggaatcatcaaaacgctgCtgaggtgccccagtaaaaaa							TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	46307328	46307328	C	-	DEL	CCR3	ENST00000545097	human	ensembl	69_37n	1	known	frame_shift_del	c.742	p.L248fs	0.884	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1,prints_P2_purnocptor	-	no_errors	CCR3	HGNC	ENSG00000183625	280	0	0	203	54	20.38	-	-	-	-	46307328	C	-	46307328	7	5	588	1	0	1	0	1	0	0	0	0	2971	796	28	0	748	0	CCR3	3	46307328	Frame_Shift_Del	DEL	C	TCGA-BH-A1EU-01A-11D-A135-09		46307328	151715102	3	52415										
FLNB	0	genome.wustl.edu	37	chr3	58097580	58097582	+	In_Frame_Del	DEL	GGC	GGC	-													0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	cacgatgccagcaaagtgaaGgcagaaggcccagggctcag							TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	58097580	58097582	GGC	-	DEL	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	in_frame_del	c.2547_2549	p.A850in_frame_del	1.000:1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	165	0	0	128	35	21.08	-	-	-	-	58097582	GGC	-	58097580	7	5	588	1	0	1	0	1	0	0	0	0	5980	991	35	0	2613	0	FLNB	3	58097580	In_Frame_Del	DEL	GGC	TCGA-BH-A1EU-01A-11D-A135-09	11790252	58097580	139924850	4	52416										
KPNA4	0	genome.wustl.edu	37	chr3	160283041	160283041	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	ttcttgaaattcttgagccgTtggttgtccagtttctcgtt	9	8	3	2			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	160283041	160283041	T	C	SNP	KPNA4	ENST00000334256	human	ensembl	69_37n	-1	known	silent	c.30	p.Q10	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold,pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA4	HGNC	ENSG00000186432	139	0	0	142	44	23.66	-	-	-	C	160283041	T	C	160283041	2	2	588	1	0	0	0	0	0	0	0	1	8485	1722	60	5		5	KPNA4	3	160283041	Silent	SNP	T	TCGA-BH-A1EU-01A-11D-A135-09	102185461	160283041	37739389	5	52417										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	203	1	0.49	194	78	28.68	-	-	-	T	178952085	A	T	178952085	3	4	588	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A1EU-01A-11D-A135-09	18669044	178952085	19070345	6	52418										
PPP3CA	0	genome.wustl.edu	37	chr4	102117231	102117231	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	gttttccatcattatcaaacActtcttttgctgtaagccgg	6	10	3	0			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	102117231	102117231	A	G	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.101	p.V34A	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	356	1	0.28	348	54	13.37	-	-	-	G	102117231	A	G	102117231	3	3	588	1	0	0	0	0	1	0	0	0	12474	159	6	5	1516	5	PPP3CA	4	102117231	Missense_Mutation	SNP	A	TCGA-BH-A1EU-01A-11D-A135-09		102117231	89037045	7	52419										
KIAA1109	0	genome.wustl.edu	37	chr4	123156157	123156157	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	gagaatggataattactaaaGaaattcccaaaattatagat	6	4	0	3			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	123156157	123156157	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.3553	p.E1185K	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	222	0	0	133	26	16.35	-	-	-	A	123156157	G	A	123156157	3	1	588	1	0	0	0	0	1	0	0	0	8260	943	33	2	3651	2	KIAA1109	4	123156157	Missense_Mutation	SNP	G	TCGA-BH-A1EU-01A-11D-A135-09	21038926	123156157	67998119	8	52420										
MFSD8	0	genome.wustl.edu	37	chr4	128854182	128854182	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	atagagtcacaaaaaacagaAcattgatggccacaacagca	7	9	1	3			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	128854182	128854182	A	G	SNP	MFSD8	ENST00000296468	human	ensembl	69_37n	-1	known	missense	c.821	p.V274A	0.929	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073	413	0	0	371	48	11.46	-	-	-	G	128854182	A	G	128854182	3	3	588	1	0	0	0	0	1	0	0	0	9609	43	2	5	755	5	MFSD8	4	128854182	Missense_Mutation	SNP	A	TCGA-BH-A1EU-01A-11D-A135-09	5698025	128854182	62300094	9	52421										
AGGF1	0	genome.wustl.edu	37	chr5	76358903	76358903	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	cttcagcttcggcgaacacaTgcaggcttggggacaggcaa	13	11	1	0			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	5	76358903	76358903	T	G	SNP	AGGF1	ENST00000312916	human	ensembl	69_37n	1	known	missense	c.1971	p.H657Q	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252	202	0	0	235	73	23.7	-	-	-	G	76358903	T	G	76358903	3	3	588	1	0	0	0	0	1	0	0	0	382	1461	51	5	2025	5	AGGF1	5	76358903	Missense_Mutation	SNP	T	TCGA-BH-A1EU-01A-11D-A135-09		76358903	104556357	10	52422										
AP4M1	0	genome.wustl.edu	37	chr7	99700554	99700554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	ccatctcccgcaatgtggctCtggtatacgaactcctggat	9	13	2	0			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	7	99700554	99700554	C	G	SNP	AP4M1	ENST00000359593	human	ensembl	69_37n	1	known	missense	c.322	p.L108V	0.998	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP4M1	HGNC	ENSG00000221838	188	1	0.53	141	55	28.06	-	-	-	G	99700554	C	G	99700554	3	3	588	1	0	0	0	0	1	0	0	0	754	912	32	2	336	2	AP4M1	7	99700554	Missense_Mutation	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09		99700554	59438109	11	52423										
PNMA2	0	genome.wustl.edu	37	chr8	26365461	26365461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	ccggagcagggtttctagccGtaacacataggctgagacct	12	11	1	1			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	26365461	26365461	G	A	SNP	PNMA2	ENST00000522362	human	ensembl	69_37n	-1	known	missense	c.811	p.R271W	0.023	pfam_Retrotrans_gag	pfam_Retrotrans_gag	-	no_errors	PNMA2	HGNC	ENSG00000240694	128	0	0	105	25	19.23	-	-	-	A	26365461	G	A	26365461	3	1	588	1	0	0	0	0	1	0	0	0	12228	1144	40	1	287	1	PNMA2	8	26365461	Missense_Mutation	SNP	G	TCGA-BH-A1EU-01A-11D-A135-09		26365461	119998561	12	52424										
ADHFE1	0	genome.wustl.edu	37	chr8	67356944	67356944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	gaagaatggcatcccctttaCggtttatgataatgtgagag	11	6	0	3			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	67356944	67356944	C	T	SNP	ADHFE1	ENST00000396623	human	ensembl	69_37n	1	known	missense	c.314	p.T105M	1.000	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576	338	2	0.59	344	128	27.12	-	-	-	T	67356944	C	T	67356944	3	4	588	1	0	0	0	0	1	0	0	0	314	536	19	1	332	1	ADHFE1	8	67356944	Missense_Mutation	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09	40991483	67356944	79007078	13	52425										
TYR	0	genome.wustl.edu	37	chr11	89018003	89018003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	agtttatccagaagccaatgCacccattggacataaccggg	9	11	0	1			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	89018003	89018003	C	T	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	missense	c.1247	p.A416V	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	176	0	0	181	66	26.72	-	-	-	T	89018003	C	T	89018003	3	4	588	1	0	0	0	0	1	0	0	0	16910	710	25	4	1261	4	TYR	11	89018003	Missense_Mutation	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09		89018003	45988513	14	52426										
GRIK4	0	genome.wustl.edu	37	chr11	120833362	120833362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	attgggggcctgctggacacCaagggctatgggattggcat	16	8	0	0			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	120833362	120833362	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	69_37n	1	known	silent	c.2238	p.T746	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	107	0	0	79	21	21	-	-	-	T	120833362	C	T	120833362	2	4	588	1	0	0	0	0	0	0	0	1	6827	581	21	4		4	GRIK4	11	120833362	Silent	SNP	C	TCGA-BH-A1EU-01A-11D-A135-09	31815359	120833362	14173154	15	52427										
PDE9A	0	genome.wustl.edu	37	chr21	44182234	44182234	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.490336034139689	2.46753246753247	8.63636363636364	1.43939393939394	1	1	0	agagctggcggtccgctacaAtgacatctcaccgctggaga	12	12	1	3			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	21	44182234	44182234	A	G	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	1	known	missense	c.1127	p.N376S	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	95	0	0	85	32	27.35	-	-	-	G	44182234	A	G	44182234	3	3	588	1	0	0	0	0	1	0	0	0	11728	101	4	5	1261	5	PDE9A	21	44182234	Missense_Mutation	SNP	A	TCGA-BH-A1EU-01A-11D-A135-09		44182234	3947661	16	52428										
KIF1B	0	genome.wustl.edu	37	chr1	10421003	10421003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttaggaccttctaccgctttGaggctgtgtgggatagctct	12	9	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	10421003	10421003	G	C	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.3934	p.E1312Q	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	568	0	0	224	98	30.34	-	-	-	C	10421003	G	C	10421003	3	2	589	1	0	0	0	0	1	0	0	0	8336	1291	45	2	5565	2	KIF1B	1	10421003	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		10421003	238829618	1	52429										
PGD	0	genome.wustl.edu	37	chr1	10477061	10477061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	taggagaagctgtctttgctCggtgcttatcatctctgaag	11	8	3	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	10477061	10477061	C	T	SNP	PGD	ENST00000270776	human	ensembl	69_37n	1	known	missense	c.862	p.R288W	0.997	pfam_6PGDH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657	263	1	0.38	94	66	40.99	-	-	-	T	10477061	C	T	10477061	3	4	589	1	0	0	0	0	1	0	0	0	11861	875	31	1	896	1	PGD	1	10477061	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	56058	10477061	238773560	2	52430										
PTPRF	0	genome.wustl.edu	37	chr1	44035447	44035447	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ccgcatcaagcagctgcgttCaggtgagcagagggcagggg	17	10	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	44035447	44035447	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.566	p.S189L	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	94	0	0	99	12	10.81	-	-	-	T	44035447	C	T	44035447	3	4	589	1	0	0	0	0	1	0	0	0	12884	838	29	2	580	2	PTPRF	1	44035447	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	33558386	44035447	205215174	3	52431										
SPTA1	0	genome.wustl.edu	37	chr1	158648273	158648273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	acgaaggcgctcccaggcagCattcacctcattttgcttag	9	13	2	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	158648273	158648273	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.730	p.A244T	0.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	223	2	0.89	230	91	28.26	-	-	-	T	158648273	C	T	158648273	3	4	589	1	0	0	0	0	1	0	0	0	15207	710	25	4	6717	4	SPTA1	1	158648273	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	114612826	158648273	90602348	4	52432										
SYT14	0	genome.wustl.edu	37	chr1	210334230	210334230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgatgtgacactcatactgtCtgtgtataacaaacgcagca	8	9	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	210334230	210334230	C	G	SNP	SYT14	ENST00000422431	human	ensembl	69_37n	1	known	missense	c.1703	p.S568C	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT14	HGNC	ENSG00000143469	358	0	0	513	70	12.01	-	-	-	G	210334230	C	G	210334230	3	3	589	1	0	0	0	0	1	0	0	0	15562	913	32	2	1741	2	SYT14	1	210334230	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	51685957	210334230	38916391	5	52433										
C1orf65	0	genome.wustl.edu	37	chr1	223567997	223567997	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ggaacctccgggagcagcacAgcctgcagctgcagaggagg	16	12	0	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	223567997	223567997	A	C	SNP	C1orf65	ENST00000366875	human	ensembl	69_37n	1	known	missense	c.1180	p.S394R	0.003	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	23	0	0	22	7	24.14	-	-	-	C	223567997	A	C	223567997	3	2	589	1	0	0	0	0	1	0	0	0	2075	188	7	5	1182	5	C1orf65	1	223567997	Missense_Mutation	SNP	A	TCGA-BH-A1EV-01A-11D-A135-09	13233767	223567997	25682624	6	52434										
ZNF695	0	genome.wustl.edu	37	chr1	247150728	247150728	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgttcagtcagatgtgagctCtggttaaaggcttttccaca	10	8	3	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	1	247150728	247150728	C	G	SNP	ZNF695	ENST00000339986	human	ensembl	69_37n	-1	known	missense	c.1089	p.Q363H	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	218	0	0	174	33	15.87	-	-	-	G	247150728	C	G	247150728	3	3	589	1	0	0	0	0	1	0	0	0	18194	912	32	2	462	2	ZNF695	1	247150728	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	23582731	247150728	2099893	7	52435										
ADAM17	0	genome.wustl.edu	37	chr2	9633946	9633946	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	acatcctgtactcgtttctcAcatttgccctatgaagaaaa	5	11	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	9633946	9633946	A	G	SNP	ADAM17	ENST00000310823	human	ensembl	69_37n	-1	known	silent	c.1923	p.C641	1.000	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694	457	1	0.22	403	83	17.08	-	-	-	G	9633946	A	G	9633946	2	3	589	1	0	0	0	0	0	0	0	1	238	157	6	5		5	ADAM17	2	9633946	Silent	SNP	A	TCGA-BH-A1EV-01A-11D-A135-09		9633946	233565427	8	52436										
IFT172	0	genome.wustl.edu	37	chr2	27707103	27707103	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ctgaactttaccgtctggatGaacttgttgcagatgacttt	9	8	1	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	27707103	27707103	G	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	silent	c.327	p.F109	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	285	0	0	238	48	16.78	-	-	-	A	27707103	G	A	27707103	2	1	589	1	0	0	0	0	0	0	0	1	7611	1281	45	2		2	IFT172	2	27707103	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	18073157	27707103	215492270	9	52437										
WDR43	0	genome.wustl.edu	37	chr2	29135533	29135533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gatgttgctttcagctggtcGaacaatcaaactatgggttt	10	7	2	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	29135533	29135533	G	A	SNP	WDR43	ENST00000407426	human	ensembl	69_37n	1	known	missense	c.563	p.R188Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811	334	0	0	309	71	18.59	-	-	-	A	29135533	G	A	29135533	3	1	589	1	0	0	0	0	1	0	0	0	17392	1058	37	1	577	1	WDR43	2	29135533	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	1428430	29135533	214063840	10	52438										
MSH6	0	genome.wustl.edu	37	chr2	48032158	48032158	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	acttggtgcctcagacagaaTaatgtcaggtgagttttttg	11	6	2	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	48032158	48032158	T	A	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.3548	p.I1183K	1.000	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	412	3	0.72	287	170	37.2	-	-	-	A	48032158	T	A	48032158	3	1	589	1	0	0	0	0	1	0	0	0	9946	1406	49	5	3570	5	MSH6	2	48032158	Missense_Mutation	SNP	T	TCGA-BH-A1EV-01A-11D-A135-09	18896625	48032158	195167215	11	52439										
PDCL3	0	genome.wustl.edu	37	chr2	101188161	101188161	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	cctgcatacccaattatcctGataggaatctgcccacgata	6	13	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	101188161	101188161	G	C	SNP	PDCL3	ENST00000264254	human	ensembl	69_37n	1	known	missense	c.478	p.D160H	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	-	no_errors	PDCL3	HGNC	ENSG00000115539	351	0	0	316	69	17.92	-	-	-	C	101188161	G	C	101188161	3	2	589	1	0	0	0	0	1	0	0	0	11701	1290	45	2	496	2	PDCL3	2	101188161	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	53156003	101188161	142011212	12	52440										
HOXD8	0	genome.wustl.edu	37	chr2	176995644	176995644	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	atcagagctcgtctccttctCaaatgtttccgtggatgaga	9	10	3	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	176995644	176995644	C	G	SNP	HOXD8	ENST00000313173	human	ensembl	69_37n	1	known	missense	c.550	p.Q184E	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD8	HGNC	ENSG00000175879	19	0	0	10	4	28.57	-	-	-	G	176995644	C	G	176995644	3	3	589	1	0	0	0	0	1	0	0	0	7376	827	29	2	552	2	HOXD8	2	176995644	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	75807483	176995644	66203729	13	52441										
FSIP2	0	genome.wustl.edu	37	chr2	186672616	186672616	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	caaagcttttatctatatttCcaaaagtacataaagaaaga	4	6	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	186672616	186672616	C	G	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.18850	p.P6284A	0.933	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	59	0	0	51	9	15	-	-	-	G	186672616	C	G	186672616	3	3	589	1	0	0	0	0	1	0	0	0	6124	855	30	2	18916	2	FSIP2	2	186672616	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	9676972	186672616	56526757	14	52442										
DOCK10	0	genome.wustl.edu	37	chr2	225729686	225729686	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgccattttccaaagccacaGaagcccccaagagcatctgt	7	14	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	225729686	225729686	G	A	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1376	p.S459F	0.075	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	218	0	0	145	54	27.14	-	-	-	A	225729686	G	A	225729686	3	1	589	1	0	0	0	0	1	0	0	0	4720	942	33	2	5364	2	DOCK10	2	225729686	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	39057070	225729686	17469687	15	52443										
FARP2	0	genome.wustl.edu	37	chr2	242373613	242373613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agaatttttgttgggtagtaGagatgaatgtaagaacttct	11	2	1	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	2	242373613	242373613	G	C	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	missense	c.908	p.R303T	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	551	0	0	417	91	17.91	-	-	-	C	242373613	G	C	242373613	3	2	589	1	0	0	0	0	1	0	0	0	5723	942	33	2	942	2	FARP2	2	242373613	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	16643927	242373613	825760	16	52444										
C3orf24	0	genome.wustl.edu	37	chr3	10146177	10146177	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gaatctactccactgaggcgGatgggctggggcttcctgac	14	11	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	10146177	10146177	G	C	SNP	C3orf24	ENST00000450660	human	ensembl	69_37n	-1	known	missense	c.282	p.I94M	1.000	NULL	NULL	-	no_errors	C3orf24	HGNC	ENSG00000163705	359	0	0	298	214	41.55	-	-	-	C	10146177	G	C	10146177	3	2	589	1	0	0	0	0	1	0	0	0	2237	1164	41	2	255	2	C3orf24	3	10146177	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		10146177	187876253	17	52445										
NGLY1	0	genome.wustl.edu	37	chr3	25761536	25761536	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tctacttgtgctgtatcagaTcgcaatttccattctactgt	6	10	3	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	25761536	25761536	T	G	SNP	NGLY1	ENST00000280700	human	ensembl	69_37n	-1	known	silent	c.1758	p.R586	0.017	superfamily_Galactose-bd-like	pfam_PUB_domain,pfam_Transglutaminase-like,pfam_Rad4/PNGase_transGLS-fold,pfam_Peptide_N_glycanase_PAW_dom,superfamily_Galactose-bd-like,smart_PUG-dom,smart_Transglutaminase-like,smart_Peptide_N_glycanase_PAW_dom	-	no_errors	NGLY1	HGNC	ENSG00000151092	341	0	0	216	64	22.86	-	-	-	G	25761536	T	G	25761536	2	3	589	1	0	0	0	0	0	0	0	1	10470	1422	50	5		5	NGLY1	3	25761536	Silent	SNP	T	TCGA-BH-A1EV-01A-11D-A135-09	15615359	25761536	172260894	18	52446										
ARPP21	0	genome.wustl.edu	37	chr3	35785363	35785363	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tattacccatctggtcagtaCcctacctcaaccacgcaaca	4	16	3	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	35785363	35785363	C	A	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	nonsense	c.1941	p.Y647*	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	229	0	0	217	34	13.55	-	-	-	A	35785363	C	A	35785363	4	1	589	1	0	0	0	0	0	1	0	0	982	518	18	4	2013	4	ARPP21	3	35785363	Nonsense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	10023827	35785363	162237067	19	52447										
LRTM1	0	genome.wustl.edu	37	chr3	54952782	54952782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gaccacaccgtgggcagagcCgggccactgagcctgcgagg	16	14	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	54952782	54952782	C	T	SNP	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	missense	c.742	p.G248S	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	133	0	0	87	27	23.68	-	-	-	T	54952782	C	T	54952782	3	4	589	1	0	0	0	0	1	0	0	0	9110	652	23	1	299	1	LRTM1	3	54952782	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	19167419	54952782	143069648	20	52448										
ROBO2	0	genome.wustl.edu	37	chr3	77607107	77607107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttcttcagttttgacagataGacctccacctataattctac	4	11	3	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	77607107	77607107	G	C	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1244	p.R415T	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	124	0	0	87	22	19.64	-	-	-	C	77607107	G	C	77607107	3	2	589	1	0	0	0	0	1	0	0	0	13600	942	33	2	1280	2	ROBO2	3	77607107	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	22654325	77607107	120415323	21	52449										
COL8A1	0	genome.wustl.edu	37	chr3	99514307	99514307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tccaggccccaaaggggagcCgggcctcccagggccccctg	14	18	0	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	99514307	99514307	C	T	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	missense	c.1562	p.P521L	0.664	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	23	0	0	29	8	21.62	-	-	-	T	99514307	C	T	99514307	3	4	589	1	0	0	0	0	1	0	0	0	3735	652	23	1	1568	1	COL8A1	3	99514307	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	21907200	99514307	98508123	22	52450										
PTX3	0	genome.wustl.edu	37	chr3	157160269	157160269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ctgcatttgggtcaaagccaCagatgtattaaacaaaacca	7	9	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	157160269	157160269	C	T	SNP	PTX3	ENST00000295927	human	ensembl	69_37n	1	known	missense	c.647	p.T216I	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_LamG-like,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_LamG-like,prints_Pentaxin	-	no_errors	PTX3	HGNC	ENSG00000163661	166	0	0	165	34	17.09	-	-	-	T	157160269	C	T	157160269	3	4	589	1	0	0	0	0	1	0	0	0	12905	478	17	4	657	4	PTX3	3	157160269	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	57645962	157160269	40862161	23	52451										
LMLN	0	genome.wustl.edu	37	chr3	197751548	197751548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gaaatttttaagaactatggCgctgaaaagtatggacctca	9	6	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	3	197751548	197751548	C	T	SNP	LMLN	ENST00000330198	human	ensembl	69_37n	1	known	silent	c.1545	p.G515	0.993	pfam_Peptidase_M8	pfam_Peptidase_M8	-	no_errors	LMLN	HGNC	ENSG00000185621	267	2	0.74	198	164	45.18	-	-	-	T	197751548	C	T	197751548	2	4	589	1	0	0	0	0	0	0	0	1	8903	755	27	1		1	LMLN	3	197751548	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	40591279	197751548	270882	24	52452										
USP46	0	genome.wustl.edu	37	chr4	53492238	53492238	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aagcgttccctgaaaaatctCatggacccaggtgagttctg	10	10	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	4	53492238	53492238	C	T	SNP	USP46	ENST00000441222	human	ensembl	69_37n	-1	known	missense	c.508	p.E170K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP46	HGNC	ENSG00000109189	654	0	0	407	109	21.08	-	-	-	T	53492238	C	T	53492238	3	4	589	1	0	0	0	0	1	0	0	0	17174	835	29	2	616	2	USP46	4	53492238	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		53492238	137662038	25	52453										
LRBA	0	genome.wustl.edu	37	chr4	151829582	151829582	+	Frame_Shift_Del	DEL	G	G	-													0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ctcctccaattgaatgcattGcactttggatggaatgtgtt							TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	4	151829582	151829582	G	-	DEL	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	frame_shift_del	c.1397	p.A466fs	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	371	3	0.8	199	77	27.02	-	-	-	-	151829582	G	-	151829582	7	5	589	1	0	1	0	1	0	0	0	0	8997	1319	46	0	7386	0	LRBA	4	151829582	Frame_Shift_Del	DEL	G	TCGA-BH-A1EV-01A-11D-A135-09	98337344	151829582	39324694	26	52454										
ENPP6	0	genome.wustl.edu	37	chr4	185045320	185045320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tttgggacacttacttgaagGagtcaagagcatcgctgact	11	8	1	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	4	185045320	185045320	G	A	SNP	ENPP6	ENST00000296741	human	ensembl	69_37n	-1	known	missense	c.527	p.S176F	0.927	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303	279	0	0	124	54	30.34	-	-	-	A	185045320	G	A	185045320	3	1	589	1	0	0	0	0	1	0	0	0	5171	1174	41	2	819	2	ENPP6	4	185045320	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	33215738	185045320	6108956	27	52455										
RICTOR	0	genome.wustl.edu	37	chr5	38944651	38944651	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tatacggcacattggtgtatCatctggaattgttttaacac	8	7	2	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	5	38944651	38944651	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.4882	p.D1628N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	278	0	0	266	55	17.13	-	-	-	T	38944651	C	T	38944651	3	4	589	1	0	0	0	0	1	0	0	0	13442	826	29	2	328	2	RICTOR	5	38944651	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		38944651	141970609	28	52456										
ERAP1	0	genome.wustl.edu	37	chr5	96129517	96129517	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agcttatacctggtgagccaGttcatgggccacagtcattg	11	10	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	5	96129517	96129517	G	C	SNP	ERAP1	ENST00000296754	human	ensembl	69_37n	-1	known	missense	c.1063	p.L355V	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	153	0	0	105	33	23.91	-	-	-	C	96129517	G	C	96129517	3	2	589	1	0	0	0	0	1	0	0	0	5240	1020	36	4	1851	4	ERAP1	5	96129517	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	57184866	96129517	84785743	29	52457										
ZNF608	0	genome.wustl.edu	37	chr5	123976948	123976948	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	atgatagagctgctgaccttGaaaagggtcatattgacccg	11	8	1	5			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	5	123976948	123976948	G	C	SNP	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	missense	c.4447	p.Q1483E	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	193	0	0	110	28	20.14	-	-	-	C	123976948	G	C	123976948	3	2	589	1	0	0	0	0	1	0	0	0	18130	1299	45	2	103	2	ZNF608	5	123976948	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	27847431	123976948	56938312	30	52458										
SLC22A4	0	genome.wustl.edu	37	chr5	131657966	131657966	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttggctatatgctgctgccaCtgtttgcttacttcatcaga	8	10	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	5	131657966	131657966	C	G	SNP	SLC22A4	ENST00000200652	human	ensembl	69_37n	1	known	missense	c.742	p.L248V	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208	540	2	0.37	339	90	20.98	-	-	-	G	131657966	C	G	131657966	3	3	589	1	0	0	0	0	1	0	0	0	14545	564	20	4	756	4	SLC22A4	5	131657966	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	7681018	131657966	49257294	31	52459										
PCDHA8	0	genome.wustl.edu	37	chr5	140222591	140222591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gctggacgagaatgacaacgCgccggcactgctggagcctc	14	13	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	5	140222591	140222591	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.1685	p.A562V	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	82	0	0	32	31	49.21	-	-	-	T	140222591	C	T	140222591	3	4	589	1	0	0	0	0	1	0	0	0	11603	768	27	1	1687	1	PCDHA8	5	140222591	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	8564625	140222591	40692669	32	52460										
ZSCAN16	0	genome.wustl.edu	37	chr6	28097614	28097614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	acaggtcttattcagcatcaGagaatccacacaggtgaaaa	8	9	3	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	28097614	28097614	G	A	SNP	ZSCAN16	ENST00000340487	human	ensembl	69_37n	1	known	silent	c.933	p.Q311	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812	234	2	0.85	103	62	37.58	-	-	-	A	28097614	G	A	28097614	2	1	589	1	0	0	0	0	0	0	0	1	18321	933	33	2		2	ZSCAN16	6	28097614	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		28097614	143017453	33	52461										
NOTCH4	0	genome.wustl.edu	37	chr6	32190509	32190509	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gcagggcttggcagctgcctCcattttggcagagctgggcg	16	11	0	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	32190509	32190509	C	A	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.230	p.G77V	0.999	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	142	0	0	101	18	15.13	-	-	-	A	32190509	C	A	32190509	3	1	589	1	0	0	0	0	1	0	0	0	10623	855	30	2	5893	2	NOTCH4	6	32190509	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	4092895	32190509	138924558	34	52462										
PKHD1	0	genome.wustl.edu	37	chr6	51934282	51934282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgtctggtataggaaaagatCctgtttagcactgatcagcc	10	8	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	51934282	51934282	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.751	p.D251N	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	423	0	0	369	75	16.82	-	-	-	T	51934282	C	T	51934282	3	4	589	1	0	0	0	0	1	0	0	0	12045	855	30	2	11740	2	PKHD1	6	51934282	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	19743773	51934282	119180785	35	52463										
OGFRL1	0	genome.wustl.edu	37	chr6	72011289	72011289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agaaaggagaaagctcctgcGgttcgcccagaaacactaca	10	11	0	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	72011289	72011289	G	A	SNP	OGFRL1	ENST00000370435	human	ensembl	69_37n	1	known	missense	c.893	p.R298Q	0.904	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900	72	0	0	60	15	20	-	-	-	A	72011289	G	A	72011289	3	1	589	1	0	0	0	0	1	0	0	0	10917	1116	39	1	919	1	OGFRL1	6	72011289	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	20077007	72011289	99103778	36	52464										
SLC35A1	0	genome.wustl.edu	37	chr6	88221166	88221166	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gtatgtgtttccatatatctCtatggattacccagacaaga	7	8	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	88221166	88221166	C	G	SNP	SLC35A1	ENST00000369552	human	ensembl	69_37n	1	known	silent	c.936	p.L312	0.916	pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A1	HGNC	ENSG00000164414	297	0	0	142	45	24.06	-	-	-	G	88221166	C	G	88221166	2	3	589	1	0	0	0	0	0	0	0	1	14659	900	32	2		2	SLC35A1	6	88221166	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	16209877	88221166	82893901	37	52465										
ARID1B	0	genome.wustl.edu	37	chr6	157527466	157527466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tggcagacgattctgggaaaGaggaggaagatgctgaatgt	16	4	1	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	157527466	157527466	G	C	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.5311	p.E1771Q	0.994	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	246	0	0	177	80	31.01	-	-	-	C	157527466	G	C	157527466	3	2	589	1	0	0	0	0	1	0	0	0	916	943	33	2	5269	2	ARID1B	6	157527466	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	69306300	157527466	13587601	38	52466										
PACRG	0	genome.wustl.edu	37	chr6	163483209	163483209	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttgagaagctggattaccatCattatctgcctctgtttttt	7	8	3	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	6	163483209	163483209	C	G	SNP	PACRG	ENST00000534958	human	ensembl	69_37n	1	putative	nonsense	c.65	p.S22*	1.000	pfam_Parkin_co-regulated_protein	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PACRG	HGNC	ENSG00000112530	322	0	0	119	51	30	-	-	-	G	163483209	C	G	163483209	4	3	589	1	0	0	0	0	0	1	0	0	11443	826	29	2	329	2	PACRG	6	163483209	Nonsense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	5955743	163483209	7631858	39	52467										
DNAH11	0	genome.wustl.edu	37	chr7	21744181	21744181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ggaggaggaagctgcactttGaacagatggtcaggcagtct	15	7	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	7	21744181	21744181	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.6424	p.E2142Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	173	0	0	179	36	16.74	-	-	-	C	21744181	G	C	21744181	3	2	589	1	0	0	0	0	1	0	0	0	4635	1291	45	2	6575	2	DNAH11	7	21744181	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		21744181	137394482	40	52468										
AEBP1	0	genome.wustl.edu	37	chr7	44147257	44147257	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aggagaccgagcaacccacaCtggactacaatgaccagatc	9	13	0	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	7	44147257	44147257	C	G	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.697	p.L233V	0.167	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	194	0	0	177	37	17.29	-	-	-	G	44147257	C	G	44147257	3	3	589	1	0	0	0	0	1	0	0	0	349	564	20	4	711	4	AEBP1	7	44147257	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	22403076	44147257	114991406	41	52469										
CREB3L2	0	genome.wustl.edu	37	chr7	137597730	137597730	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aaagggacacagggagggcaGacagaccttctttaggagag	15	7	1	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	7	137597730	137597730	G	A	SNP	CREB3L2	ENST00000452463	human	ensembl	69_37n	-1	known	missense	c.590	p.S197F	0.001	NULL	NULL	-	no_errors	CREB3L2	HGNC	ENSG00000182158	156	0	0	54	24	30.77	-	-	-	A	137597730	G	A	137597730	3	1	589	1	0	0	0	0	1	0	0	0	3887	957	33	2		2	CREB3L2	7	137597730	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	93450473	137597730	21540933	42	52470										
ERI1	0	genome.wustl.edu	37	chr8	8869082	8869082	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gatgttctaaagaagagactGaaaaactattataagaagca	8	4	1	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	8	8869082	8869082	G	C	SNP	ERI1	ENST00000250263	human	ensembl	69_37n	1	known	silent	c.318	p.L106	0.996	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_DNA-bd,superfamily_RNaseH-like_dom,smart_SAP_DNA-bd,smart_Exonuclease,pfscan_SAP_DNA-bd	-	no_errors	ERI1	HGNC	ENSG00000104626	213	0	0	200	44	18.03	-	-	-	C	8869082	G	C	8869082	2	2	589	1	0	0	0	0	0	0	0	1	5264	1277	45	2		2	ERI1	8	8869082	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		8869082	137494940	43	52471										
ENTPD4	0	genome.wustl.edu	37	chr8	23291938	23291938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttttatagttgacaggaaacGaaaagcccctatgaaacacc	7	9	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	8	23291938	23291938	G	A	SNP	ENTPD4	ENST00000358689	human	ensembl	69_37n	-1	known	missense	c.1514	p.S505L	0.925	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217	299	0	0	229	67	22.48	-	-	-	A	23291938	G	A	23291938	3	1	589	1	0	0	0	0	1	0	0	0	5178	1059	37	1	344	1	ENTPD4	8	23291938	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	14422856	23291938	123072084	44	52472										
TEX15	0	genome.wustl.edu	37	chr8	30695443	30695443	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	atgcgcaagtgtcttttgggTtctctaagggtaaaagtgag	13	5	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	8	30695443	30695443	T	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7208	p.N2403S	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	516	1	0.19	441	106	19.34	-	-	-	C	30695443	T	C	30695443	3	2	589	1	0	0	0	0	1	0	0	0	15874	1725	60	5	1169	5	TEX15	8	30695443	Missense_Mutation	SNP	T	TCGA-BH-A1EV-01A-11D-A135-09	7403505	30695443	115668579	45	52473										
PKHD1L1	0	genome.wustl.edu	37	chr8	110418568	110418568	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tttaatccaatcaaagtcttCctacctgctgatgcttctga	5	11	3	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	8	110418568	110418568	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.1674	p.F558	0.784	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	199	0	0	191	44	18.72	-	-	-	T	110418568	C	T	110418568	2	4	589	1	0	0	0	0	0	0	0	1	12046	854	30	2		2	PKHD1L1	8	110418568	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	79723125	110418568	35945454	46	52474										
LRRC19	0	genome.wustl.edu	37	chr9	26996420	26996420	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aggaaattttgagtggcattCagccttatgaggtactgttt	11	5	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	9	26996420	26996420	C	T	SNP	LRRC19	ENST00000380055	human	ensembl	69_37n	-1	known	missense	c.673	p.E225K	0.999	smart_Cys-rich_flank_reg_C	smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC19	HGNC	ENSG00000184434	314	0	0	277	50	15.24	-	-	-	T	26996420	C	T	26996420	3	4	589	1	0	0	0	0	1	0	0	0	9041	835	29	2	447	2	LRRC19	9	26996420	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		26996420	114217011	47	52475										
LINGO2	0	genome.wustl.edu	37	chr9	27948861	27948861	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gtgggccttcaaatcattttCatgttgaacctcctgggtcc	9	11	3	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	9	27948861	27948861	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.1809	p.M603I	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	254	0	0	212	54	20.3	-	-	-	T	27948861	C	T	27948861	3	4	589	1	0	0	0	0	1	0	0	0	8871	826	29	2	15	2	LINGO2	9	27948861	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	952441	27948861	113264570	48	52476										
C9orf3	0	genome.wustl.edu	37	chr9	97563249	97563249	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tctcggctggatgttctcatCgtccctgccaactttccaag	8	14	2	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	9	97563249	97563249	C	T	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	silent	c.1329	p.I443	0.523	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	128	0	0	75	25	25	-	-	-	T	97563249	C	T	97563249	2	4	589	1	0	0	0	0	0	0	0	1	2502	874	31	1		1	C9orf3	9	97563249	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	69614388	97563249	43650182	49	52477										
CAMSAP1	0	genome.wustl.edu	37	chr9	138774817	138774817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	caggatgaggctgcagacacGgcagtacagctcgctggaca	14	11	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	9	138774817	138774817	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	missense	c.268	p.R90C	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	156	0	0	117	33	22	-	-	-	A	138774817	G	A	138774817	3	1	589	1	0	0	0	0	1	0	0	0	2636	1116	39	1	4604	1	CAMSAP1	9	138774817	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	41211568	138774817	2438614	50	52478										
ANK3	0	genome.wustl.edu	37	chr10	61829925	61829925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgttgctggagagcggtcttCtaccgccagcccaaatggct	12	12	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	10	61829925	61829925	C	G	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.10714	p.E3572Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	480	1	0.21	396	101	20.24	-	-	-	G	61829925	C	G	61829925	3	3	589	1	0	0	0	0	1	0	0	0	622	922	32	2	2760	2	ANK3	10	61829925	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		61829925	73704822	51	52479										
GRID1	0	genome.wustl.edu	37	chr10	88123815	88123815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ggataccgccaactggaacaCcctgtcgtccttggccgcgt	11	15	0	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	10	88123815	88123815	C	G	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.118	p.V40L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	154	0	0	111	27	19.42	-	-	-	G	88123815	C	G	88123815	3	3	589	1	0	0	0	0	1	0	0	0	6822	507	18	4	2971	4	GRID1	10	88123815	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	26293890	88123815	47410932	52	52480										
C10orf2	0	genome.wustl.edu	37	chr10	102749027	102749027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	acggaggcttcaatctttctCgtattcttcgtaccgccctg	8	13	4	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	10	102749027	102749027	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	69_37n	1	known	missense	c.1060	p.R354C	0.152	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815	75	0	0	60	17	21.79	-	-	-	T	102749027	C	T	102749027	3	4	589	1	0	0	0	0	1	0	0	0	1607	884	31	1	1062	1	C10orf2	10	102749027	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	14625212	102749027	32785720	53	52481										
TACC2	0	genome.wustl.edu	37	chr10	123842793	123842793	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ctgctgcagcccagcagggcAcagaaagctcagcggtcttg	13	13	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	10	123842793	123842793	A	G	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.778	p.T260A	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	75	0	0	42	25	37.31	-	-	-	G	123842793	A	G	123842793	3	3	589	1	0	0	0	0	1	0	0	0	15594	159	6	5	788	5	TACC2	10	123842793	Missense_Mutation	SNP	A	TCGA-BH-A1EV-01A-11D-A135-09	21093766	123842793	11691954	54	52482										
SHANK2	0	genome.wustl.edu	37	chr11	70331543	70331543	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	actaataacgtttgcctttgGgcctgagagaatcgggcttt	11	8	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	11	70331543	70331543	G	T	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.4858	p.P1620T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	159	0	0	76	26	25.49	-	-	-	T	70331543	G	T	70331543	3	4	589	1	0	0	0	0	1	0	0	0	14354	1232	43	4	702	4	SHANK2	11	70331543	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		70331543	64674973	55	52483										
FAT3	0	genome.wustl.edu	37	chr11	92533525	92533525	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tctgatggacagcaagagtgGagttatcacattgtccaacc	10	9	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	11	92533525	92533525	G	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.7346	p.G2449A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	234	0	0	172	38	18.1	-	-	-	C	92533525	G	C	92533525	3	2	589	1	0	0	0	0	1	0	0	0	5737	1174	41	2	7380	2	FAT3	11	92533525	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	22201982	92533525	42472991	56	52484										
MAML2	0	genome.wustl.edu	37	chr11	96074861	96074861	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ggtgctttctctttcccggtCtgagctctcggccctacctc	9	16	3	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	11	96074861	96074861	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	missense	c.199	p.D67N	1.000	pfam_Neuroggenic_mastermind-like_N	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	52	0	0	28	7	20	-	-	-	T	96074861	C	T	96074861	3	4	589	1	0	0	0	0	1	0	0	0	9277	913	32	2	3291	2	MAML2	11	96074861	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	3541336	96074861	38931655	57	52485										
CUL5	0	genome.wustl.edu	37	chr11	107975024	107975024	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttcttgccacaaaagaaaatGataaaagagcaaatagagtg	8	5	1	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	11	107975024	107975024	G	C	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	missense	c.2256	p.M752I	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	220	0	0	152	21	12.14	-	-	-	C	107975024	G	C	107975024	3	2	589	1	0	0	0	0	1	0	0	0	4090	1290	45	2	2330	2	CUL5	11	107975024	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	11900163	107975024	27031492	58	52486										
SRPR	0	genome.wustl.edu	37	chr11	126136424	126136424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ggttccattggtggtgggagTactgtaatccaacacttctt	11	8	1	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	11	126136424	126136424	T	C	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.787	p.T263A	0.001	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	243	0	0	206	30	12.1	-	-	-	C	126136424	T	C	126136424	3	2	589	1	0	0	0	0	1	0	0	0	15253	1638	57	5	1165	5	SRPR	11	126136424	Missense_Mutation	SNP	T	TCGA-BH-A1EV-01A-11D-A135-09	18161400	126136424	8870092	59	52487										
ARGLU1	0	genome.wustl.edu	37	chr13	107220001	107220001	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tccaggctgctgcgcttgctCaccgtgcgcccgaagatgtc	12	15	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	13	107220001	107220001	C	T	SNP	ARGLU1	ENST00000400198	human	ensembl	69_37n	-1	known	silent	c.267	p.V89	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884	66	0	0	24	11	30.56	-	-	-	T	107220001	C	T	107220001	2	4	589	1	0	0	0	0	0	0	0	1	862	813	29	2		2	ARGLU1	13	107220001	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		107220001	7949877	60	52488										
AKAP6	0	genome.wustl.edu	37	chr14	33015522	33015522	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ctgcttccacatcctcacttGagccttgtaatcagagaagt	7	12	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	14	33015522	33015522	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.1663	p.E555K	0.665	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	164	0	0	156	36	18.75	-	-	-	A	33015522	G	A	33015522	3	1	589	1	0	0	0	0	1	0	0	0	455	1291	45	2	1673	2	AKAP6	14	33015522	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		33015522	74334018	61	52489										
PACS2	0	genome.wustl.edu	37	chr14	105834442	105834442	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	gaggaggagtatgagagcttCtcctccgagcaggaggccag	16	9	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	14	105834442	105834442	C	A	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	missense	c.618	p.F206L	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	68	0	0	64	9	12.33	-	-	-	A	105834442	C	A	105834442	3	1	589	1	0	0	0	0	1	0	0	0	11446	912	32	2	640	2	PACS2	14	105834442	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	72818920	105834442	1515098	62	52490										
IGDCC4	0	genome.wustl.edu	37	chr15	65694819	65694819	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aggacgccgttgggaagcacGatgagccttgggaagagggg	19	7	0	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	15	65694819	65694819	G	A	SNP	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	silent	c.570	p.I190	0.966	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	117	0	0	83	31	26.96	-	-	-	A	65694819	G	A	65694819	2	1	589	1	0	0	0	0	0	0	0	1	7623	1048	37	1		1	IGDCC4	15	65694819	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		65694819	36836573	63	52491										
CSPG4	0	genome.wustl.edu	37	chr15	75968731	75968731	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	cacacatgcagcagagccctCacagtgacgttcactacggc	9	15	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	15	75968731	75968731	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.6129	p.V2043	0.413	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	38	0	0	17	8	32	-	-	-	T	75968731	C	T	75968731	2	4	589	1	0	0	0	0	0	0	0	1	3992	813	29	2		2	CSPG4	15	75968731	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	10273912	75968731	26562661	64	52492										
AGBL1	0	genome.wustl.edu	37	chr15	86806012	86806012	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgactattccattttaggatGatgacttggaaacagacgtg	10	6	0	4			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	15	86806012	86806012	G	A	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.835	p.D279N	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	357	1	0.28	240	70	22.58	-	-	-	A	86806012	G	A	86806012	3	1	589	1	0	0	0	0	1	0	0	0	375	1290	45	2	865	2	AGBL1	15	86806012	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	10837281	86806012	15725380	65	52493										
PTPRM	0	genome.wustl.edu	37	chr18	8296428	8296428	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aaagatgagaacagaatgaaGaacagatacgggaatatcat	10	4	1	6			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	18	8296428	8296428	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	silent	c.2820	p.K940	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	488	2	0.41	280	95	25.33	-	-	-	A	8296428	G	A	8296428	2	1	589	1	0	0	0	0	0	0	0	1	12889	933	33	2		2	PTPRM	18	8296428	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		8296428	69780820	66	52494										
PIGN	0	genome.wustl.edu	37	chr18	59828374	59828374	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttacatgcttacctaataaaCggtgctctagagtttccatt	6	9	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	18	59828374	59828374	C	A	SNP	PIGN	ENST00000357637	human	ensembl	69_37n	-1	known	silent	c.213	p.P71	0.973	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563	504	0	0	224	91	28.89	-	-	-	A	59828374	C	A	59828374	2	1	589	1	0	0	0	0	0	0	0	1	11967	523	19	3		3	PIGN	18	59828374	Silent	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	51531946	59828374	18248874	67	52495										
CYP2A13	0	genome.wustl.edu	37	chr19	41601717	41601717	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agaatggagctctttctcttCttcaccaccatcatgcagaa	6	12	5	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	19	41601717	41601717	C	G	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	missense	c.1356	p.F452L	0.990	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	430	0	0	268	142	34.63	-	-	-	G	41601717	C	G	41601717	3	3	589	1	0	0	0	0	1	0	0	0	4192	912	32	2	1390	2	CYP2A13	19	41601717	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09		41601717	17527266	68	52496										
CXCL17	0	genome.wustl.edu	37	chr19	42946982	42946982	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agggaagagattagaactttCatcgcaactgtcggtgcagc	12	8	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	19	42946982	42946982	C	T	SNP	CXCL17	ENST00000341918	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.901	NULL	NULL	-	no_errors	CXCL17	HGNC	ENSG00000189377	318	0	0	305	51	14.25	-	-	-	T	42946982	C	T	42946982	3	4	589	1	0	0	0	0	1	0	0	0	4115	826	29	2	372	2	CXCL17	19	42946982	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	1345265	42946982	16182001	69	52497										
PSG1	0	genome.wustl.edu	37	chr19	43382380	43382380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aactttggttggctcggcttCaatcgtgacttgggcagtgg	14	8	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	19	43382380	43382380	C	G	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.115	p.E39Q	0.005	pfam_Ig_V-set	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	1034	10	0.95	648	345	34.09	-	-	-	G	43382380	C	G	43382380	3	3	589	1	0	0	0	0	1	0	0	0	12733	835	29	2	1217	2	PSG1	19	43382380	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	435398	43382380	15746603	70	52498										
FAM83E	0	genome.wustl.edu	37	chr19	49113164	49113164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgagatgaccctctcgccgtCcagcagcacaaacttctccc	7	17	2	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	19	49113164	49113164	C	A	SNP	FAM83E	ENST00000263266	human	ensembl	69_37n	-1	known	missense	c.727	p.D243Y	1.000	pfam_DUF1669	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523	13	0	0	5	11	68.75	-	-	-	A	49113164	C	A	49113164	3	1	589	1	0	0	0	0	1	0	0	0	5682	855	30	2	721	2	FAM83E	19	49113164	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	5730784	49113164	10015819	71	52499										
FASTKD5	0	genome.wustl.edu	37	chr20	3128515	3128515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	cattcaggaagcgtaaggccGagcagtaaagagtcaggtgc	14	8	2	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	20	3128515	3128515	G	A	SNP	FASTKD5	ENST00000380266	human	ensembl	69_37n	-1	known	missense	c.1202	p.S401L	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251	189	0	0	148	44	22.92	-	-	-	A	3128515	G	A	3128515	3	1	589	1	0	0	0	0	1	0	0	0	5734	1059	37	1	1096	1	FASTKD5	20	3128515	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		3128515	59897005	72	52500										
ZFP64	0	genome.wustl.edu	37	chr20	50701660	50701660	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgcttgatgcggatgtgcgaTttgagattcgccttcatggt	13	7	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	20	50701660	50701660	T	C	SNP	ZFP64	ENST00000361387	human	ensembl	69_37n	-1	known	silent	c.1374	p.K458	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	85	0	0	81	23	22.12	-	-	-	C	50701660	T	C	50701660	2	2	589	1	0	0	0	0	0	0	0	1	17748	1490	52	5		5	ZFP64	20	50701660	Silent	SNP	T	TCGA-BH-A1EV-01A-11D-A135-09	47573145	50701660	12323860	73	52501										
PPEF1	0	genome.wustl.edu	37	chrX	18767947	18767947	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	cttgaaagcgaacaggacatGagggatagatgggattatgt	14	4	0	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	18767947	18767947	G	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.273	p.M91I	0.000	pirsf_Ser/Thr-Pase_EF-hand_contain	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	186	1	0.53	146	40	21.51	-	-	-	A	18767947	G	A	18767947	3	1	589	1	0	0	0	0	1	0	0	0	12380	1290	45	2	287	2	PPEF1	23	18767947	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09		18767947	136502613	74	52502										
MAP3K15	0	genome.wustl.edu	37	chrX	19390837	19390837	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tcccagaggattttgtacagGatggcacggcgctcactgtc	12	11	1	1			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	19390837	19390837	G	A	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	silent	c.3042	p.I1014	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	127	0	0	86	19	18.1	-	-	-	A	19390837	G	A	19390837	2	1	589	1	0	0	0	0	0	0	0	1	9320	1164	41	2		2	MAP3K15	23	19390837	Silent	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	622890	19390837	135879723	75	52503										
FAM47C	0	genome.wustl.edu	37	chrX	37029349	37029349	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	aaaagctaagaagtgatgaaCctttgattgaccccaagctc	8	9	0	5			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	37029349	37029349	C	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.2866	p.P956T	0.028	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	298	0	0	234	68	22.44	-	-	-	A	37029349	C	A	37029349	3	1	589	1	0	0	0	0	1	0	0	0	5617	507	18	4	2868	4	FAM47C	23	37029349	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	17638512	37029349	118241211	76	52504										
TRMT2B	0	genome.wustl.edu	37	chrX	100274321	100274321	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	agcaacaattgactgtccatCttcctttgactttagcagcc	6	12	1	2			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	100274321	100274321	C	A	SNP	TRMT2B	ENST00000372935	human	ensembl	69_37n	-1	known	missense	c.1240	p.D414Y	0.342	pfam_U5_MeTrfase	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917	407	0	0	283	88	23.72	-	-	-	A	100274321	C	A	100274321	3	1	589	1	0	0	0	0	1	0	0	0	16662	913	32	2	286	2	TRMT2B	23	100274321	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	63244972	100274321	54996239	77	52505										
GPR112	0	genome.wustl.edu	37	chrX	135405374	135405374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	ttctcaagaatgagagcagcGaggttaaaagcatgatgcgt	12	6	1	3			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	135405374	135405374	G	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.508	p.E170K	0.006	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	427	0	0	267	91	25.35	-	-	-	A	135405374	G	A	135405374	3	1	589	1	0	0	0	0	1	0	0	0	6679	1059	37	1	514	1	GPR112	23	135405374	Missense_Mutation	SNP	G	TCGA-BH-A1EV-01A-11D-A135-09	35131053	135405374	19865186	78	52506										
GPR101	0	genome.wustl.edu	37	chrX	136112852	136112852	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443037974683544	35	9.61594931927842e-11	3.35681621554814	4.21200510855683	2.81669691470054	1	1	25	tgccttcatgctgttctcctCaactttggtgctgccttcct	7	14	3	0			TCGA-BH-A1EV-01A-11D-A135-09	TCGA-BH-A1EV-11A-24D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43fbe2a9-078a-4be2-b67c-b855329091f0	5a28c2e5-4aec-49d5-beaa-3546005f5ba5	X	136112852	136112852	C	T	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	missense	c.982	p.E328K	0.050	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	521	0	0	306	81	20.93	-	-	-	T	136112852	C	T	136112852	3	4	589	1	0	0	0	0	1	0	0	0	6672	835	29	2	547	2	GPR101	23	136112852	Missense_Mutation	SNP	C	TCGA-BH-A1EV-01A-11D-A135-09	707478	136112852	19157708	79	52507										
FBXO44	0	genome.wustl.edu	37	chr1	11718651	11718651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	ggtattgggaggagctgatgGataccacacggccggacatc	15	9	0	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	1	11718651	11718651	G	A	SNP	FBXO44	ENST00000376768	human	ensembl	69_37n	1	known	missense	c.425	p.G142E	1.000	NULL	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879	107	1	0.93	82	16	16.16	-	-	-	A	11718651	G	A	11718651	3	1	590	1	0	0	0	0	1	0	0	0	5799	1174	41	2	464	2	FBXO44	1	11718651	Missense_Mutation	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09		11718651	237531970	1	52508										
UGT2A3	0	genome.wustl.edu	37	chr4	69817413	69817413	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	cacaccaggactttcccacaGaatccacagccaacacagaa	5	16	0	2			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	4	69817413	69817413	G	A	SNP	UGT2A3	ENST00000251566	human	ensembl	69_37n	-1	known	silent	c.66	p.F22	0.000	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220	105	0	0	84	17	16.83	-	-	-	A	69817413	G	A	69817413	2	1	590	1	0	0	0	0	0	0	0	1	17052	933	33	2		2	UGT2A3	4	69817413	Silent	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09		69817413	121336863	2	52509										
PCSK5	0	genome.wustl.edu	37	chr9	78790207	78790207	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	ggaatcgaatcgaatcgaatCgaatagaatagaatagaata	9	4	0	3			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	9	78790207	78790207	C	A	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	1	known	silent	c.2062	p.R688	0.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	17	0	0	14	8	36.36	-	-	-	A	78790207	C	A	78790207	2	1	590	1	0	0	0	0	0	0	0	1	11676	899	31	3		3	PCSK5	9	78790207	Silent	SNP	C	TCGA-BH-A1EW-01A-11D-A135-09		78790207	62423224	3	52510										
CDHR1	0	genome.wustl.edu	37	chr10	85965678	85965678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	gagaggtgtatgagctgcatGtacaggtaccctccctctag	12	10	1	2			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	10	85965678	85965678	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	missense	c.958	p.V320I	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	208	2	0.95	162	23	12.43	-	-	-	A	85965678	G	A	85965678	3	1	590	1	0	0	0	0	1	0	0	0	3147	1377	48	4	996	4	CDHR1	10	85965678	Missense_Mutation	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09		85965678	49569069	4	52511										
GUCY2C	0	genome.wustl.edu	37	chr12	14835986	14835986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	tcctgcttaccagaaacagtCctcagtttctgtaccattct	5	13	3	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	14835986	14835986	C	T	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.601	p.D201N	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	166	1	0.6	115	17	12.88	-	-	-	T	14835986	C	T	14835986	3	4	590	1	0	0	0	0	1	0	0	0	6947	855	30	2	2716	2	GUCY2C	12	14835986	Missense_Mutation	SNP	C	TCGA-BH-A1EW-01A-11D-A135-09		14835986	119015909	5	52512										
GTSF1	0	genome.wustl.edu	37	chr12	54857054	54857054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	agcattgaagggacaagtagCcaatttgcttgcaacatcag	10	8	1	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	54857054	54857054	C	T	SNP	GTSF1	ENST00000546931	human	ensembl	69_37n	-1	known	missense	c.145	p.A49T	1.000	pfam_TRM13/UPF0224_CHHC_Znf_dom	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	GTSF1	HGNC	ENSG00000170627	342	3	0.87	298	44	12.83	-	-	-	T	54857054	C	T	54857054	3	4	590	1	0	0	0	0	1	0	0	0	6937	739	26	4	378	4	GTSF1	12	54857054	Missense_Mutation	SNP	C	TCGA-BH-A1EW-01A-11D-A135-09	40021068	54857054	78994841	6	52513										
OSBPL8	0	genome.wustl.edu	37	chr12	76765227	76765227	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	gctgtaaaacagtatacttaCttctctgattcaaaatctcc	4	10	3	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	76765227	76765227	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	splice_site	c.2054+1	e18+1	1.000	-	-	-	no_errors	OSBPL8	HGNC	ENSG00000091039	460	0	0	411	53	11.42	-	-	-	T	76765227	C	T	76765227	5	4	590	1	0	0	0	0	0	0	1	0	11356	579	20	4	638	4	OSBPL8	12	76765227	Splice_Site	SNP	C	TCGA-BH-A1EW-01A-11D-A135-09	21908173	76765227	57086668	7	52514										
SEPT9	0	genome.wustl.edu	37	chr17	75471846	75471846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	cggcagctttctcctggacaCgggcctggaaggctgacagg	15	12	1	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	17	75471846	75471846	C	T	SNP	SEPT9	ENST00000427180	human	ensembl	69_37n	1	known	silent	c.246	p.H82	0.000	NULL	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,pfam_ProtSyn_GTP-bd	-	no_errors	SEPT9	HGNC	ENSG00000184640	81	0	0	70	11	13.58	-	-	-	T	75471846	C	T	75471846	2	4	590	1	0	0	0	0	0	0	0	1	14159	535	19	1		1	SEPT9	17	75471846	Silent	SNP	C	TCGA-BH-A1EW-01A-11D-A135-09		75471846	5723364	8	52515										
FASN	0	genome.wustl.edu	37	chr17	80042925	80042925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	tcctaccggaggcggttcccGccgggctctcggcggagaca	15	15	1	1			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	17	80042925	80042925	G	A	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	silent	c.4395	p.G1465	0.131	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	11	0	0	6	6	50	-	-	-	A	80042925	G	A	80042925	2	1	590	1	0	0	0	0	0	0	0	1	5729	1074	38	1		1	FASN	17	80042925	Silent	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09	4571079	80042925	1152285	9	52516										
PGRMC1	0	genome.wustl.edu	37	chrX	118377191	118377191	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	cagatgaggaagaaccaaaaGatgagagtgcccggaaaaat	12	6	0	5			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	X	118377191	118377191	G	A	SNP	PGRMC1	ENST00000217971	human	ensembl	69_37n	1	known	missense	c.562	p.D188N	1.000	NULL	pfam_Cyt_B5,superfamily_Cyt_B5	-	no_errors	PGRMC1	HGNC	ENSG00000101856	355	0	0	271	34	11.15	-	-	-	A	118377191	G	A	118377191	3	1	590	1	0	0	0	0	1	0	0	0	11880	942	33	2	572	2	PGRMC1	23	118377191	Missense_Mutation	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09		118377191	36893369	10	52517										
CNGA2	0	genome.wustl.edu	37	chrX	150911669	150911669	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	3	0.447148997463317	2.109375	NA	2.109375	0.1	0.5224358974359	0	tggcttccatcatccccactGacctgatctattttgctgtg	7	13	2	2			TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	X	150911669	150911669	G	A	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	missense	c.694	p.D232N	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	200	1	0.5	155	27	14.75	-	-	-	A	150911669	G	A	150911669	3	1	590	1	0	0	0	0	1	0	0	0	3627	1290	45	2	716	2	CNGA2	23	150911669	Missense_Mutation	SNP	G	TCGA-BH-A1EW-01A-11D-A135-09	32534478	150911669	4358891	11	52518										
DNM3	0	genome.wustl.edu	37	chr1	172357865	172357865	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attccgtccaggcccattacCtcctttccccagcagcagtg	7	17	0	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	1	172357865	172357865	C	G	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	missense	c.2438	p.P813R	0.987	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	40	0	0	90	26	22.41	-	-	-	G	172357865	C	G	172357865	3	3	591	1	0	0	0	0	1	0	0	0	4708	681	24	4	2516	4	DNM3	1	172357865	Missense_Mutation	SNP	C	TCGA-BH-A1EX-01A-11D-A13L-09		172357865	76892756	1	52519										
FAM168B	0	genome.wustl.edu	37	chr2	131810522	131810522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagtgggcgttcctggggccCggtacgtgggcacagtgacc	17	11	0	1			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	2	131810522	131810522	C	T	SNP	FAM168B	ENST00000389915	human	ensembl	69_37n	-1	known	missense	c.542	p.R181Q	1.000	NULL	NULL	-	no_errors	FAM168B	HGNC	ENSG00000152102	25	0	0	41	36	46.75	-	-	-	T	131810522	C	T	131810522	3	4	591	1	0	0	0	0	1	0	0	0	5526	652	23	1	49	1	FAM168B	2	131810522	Missense_Mutation	SNP	C	TCGA-BH-A1EX-01A-11D-A13L-09		131810522	111388851	2	52520										
PITX2	0	genome.wustl.edu	37	chr4	111539459	111539459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgcgtaaggacaggcaggcGtcggcaccgcggaattcagc	16	12	1	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	4	111539459	111539459	G	A	SNP	PITX2	ENST00000306732	human	ensembl	69_37n	-1	known	missense	c.797	p.T266M	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX2	HGNC	ENSG00000164093	39	0	0	37	8	17.78	-	-	-	A	111539459	G	A	111539459	3	1	591	1	0	0	0	0	1	0	0	0	12029	1145	40	1	181	1	PITX2	4	111539459	Missense_Mutation	SNP	G	TCGA-BH-A1EX-01A-11D-A13L-09		111539459	79614817	3	52521										
IL12B	0	genome.wustl.edu	37	chr5	158750314	158750314	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctccaggggcatccggatAccaatccaattctacgacat	7	13	2	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	5	158750314	158750314	A	G	SNP	IL12B	ENST00000231228	human	ensembl	69_37n	-1	known	missense	c.112	p.Y38H	0.006	pirsf_IL_12_beta,pfscan_Ig-like	pirsf_IL_12_beta,pfam_Interleukin-12_bsu_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL_12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL12B	HGNC	ENSG00000113302	40	0	0	97	12	10.91	-	-	-	G	158750314	A	G	158750314	3	3	591	1	0	0	0	0	1	0	0	0	7679	391	14	5	894	5	IL12B	5	158750314	Missense_Mutation	SNP	A	TCGA-BH-A1EX-01A-11D-A13L-09		158750314	22164946	4	52522										
PXDNL	0	genome.wustl.edu	37	chr8	52321348	52321348	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggctctcctgctcctgtcGcgcgcactcggtgggtgggc	17	14	1	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	8	52321348	52321348	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	nonsense	c.2836	p.R946*	0.002	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	19	0	0	11	6	35.29	-	-	-	A	52321348	G	A	52321348	4	1	591	1	0	0	0	0	0	1	0	0	12931	1095	38	1	1583	1	PXDNL	8	52321348	Nonsense_Mutation	SNP	G	TCGA-BH-A1EX-01A-11D-A13L-09		52321348	94042674	5	52523										
RGS3	0	genome.wustl.edu	37	chr9	116359127	116359127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggctgcttcgacctggcacAgaagcgcatcttcgggctca	13	13	2	1			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	9	116359127	116359127	A	G	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	missense	c.3491	p.Q1164R	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	26	0	0	37	15	28.85	-	-	-	G	116359127	A	G	116359127	3	3	591	1	0	0	0	0	1	0	0	0	13390	188	7	5	4265	5	RGS3	9	116359127	Missense_Mutation	SNP	A	TCGA-BH-A1EX-01A-11D-A13L-09		116359127	24854304	6	52524										
HBB	0	genome.wustl.edu	37	chr11	5248212	5248212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttcaccttgccccacagggCagtaacggcagacttctcct	9	15	2	1			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	11	5248212	5248212	C	A	SNP	HBB	ENST00000335295	human	ensembl	69_37n	-1	known	missense	c.40	p.A14S	0.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b	-	no_errors	HBB	HGNC	ENSG00000244734	116	1	0.85	279	80	22.28	-	-	-	A	5248212	C	A	5248212	3	1	591	1	0	0	0	0	1	0	0	0	7029	710	25	4	415	4	HBB	11	5248212	Missense_Mutation	SNP	C	TCGA-BH-A1EX-01A-11D-A13L-09		5248212	129758304	7	52525										
ARID2	0	genome.wustl.edu	37	chr12	46242691	46242691	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	atgtattctgaatacctctcGacttgcagtaaattagctcg	7	9	2	1			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	12	46242691	46242691	G	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	silent	c.1653	p.S551	1.000	pfam_DNA-bd_RFX	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	124	1	0.8	139	71	33.81	-	-	-	A	46242691	G	A	46242691	2	1	591	1	0	0	0	0	0	0	0	1	917	1045	37	1		1	ARID2	12	46242691	Silent	SNP	G	TCGA-BH-A1EX-01A-11D-A13L-09		46242691	87609204	8	52526										
CRAMP1L	0	genome.wustl.edu	37	chr16	1718050	1718050	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtcctcgtcagagagctccAgcacccggctgtctccacca	9	17	2	1			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	16	1718050	1718050	A	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.3190	p.S1064C	0.746	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	54	0	0	122	33	21.29	-	-	-	T	1718050	A	T	1718050	3	4	591	1	0	0	0	0	1	0	0	0	3876	188	7	5	3256	5	CRAMP1L	16	1718050	Missense_Mutation	SNP	A	TCGA-BH-A1EX-01A-11D-A13L-09		1718050	88636703	9	52527										
TFAP4	0	genome.wustl.edu	37	chr16	4311920	4311920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcgtccttgtcctctgcccGccgtcgcttgggggacgagc	13	15	1	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	16	4311920	4311920	G	A	SNP	TFAP4	ENST00000204517	human	ensembl	69_37n	-1	known	missense	c.385	p.R129W	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFAP4	HGNC	ENSG00000090447	17	0	0	46	12	20.34	-	-	-	A	4311920	G	A	4311920	3	1	591	1	0	0	0	0	1	0	0	0	15887	1086	38	1	647	1	TFAP4	16	4311920	Missense_Mutation	SNP	G	TCGA-BH-A1EX-01A-11D-A13L-09	2593870	4311920	86042833	10	52528										
ZNF587	0	genome.wustl.edu	37	chr19	58370315	58370315	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccgcgagtttgggaaggacGttctgcccagttcaggattg	14	9	2	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	19	58370315	58370315	G	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.535	p.V179F	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	202	2	0.98	372	81	17.88	-	-	-	T	58370315	G	T	58370315	3	4	591	1	0	0	0	0	1	0	0	0	18116	1145	40	3	545	3	ZNF587	19	58370315	Missense_Mutation	SNP	G	TCGA-BH-A1EX-01A-11D-A13L-09		58370315	758668	11	52529										
ASPHD2	0	genome.wustl.edu	37	chr22	26829801	26829801	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctggtcctcttcgtgtggTactgttatcacgtgggcagg	13	10	2	0			TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	22	26829801	26829801	T	C	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	missense	c.220	p.Y74H	1.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	33	0	0	22	10	31.25	-	-	-	C	26829801	T	C	26829801	3	2	591	1	0	0	0	0	1	0	0	0	1059	1638	57	5	222	5	ASPHD2	22	26829801	Missense_Mutation	SNP	T	TCGA-BH-A1EX-01A-11D-A13L-09		26829801	24474765	12	52530										
MACF1	0	genome.wustl.edu	37	chr1	39918358	39918358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tgtgcttggttatttcaggcGgaagtgtttcgagacacagt	13	6	1	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	39918358	39918358	G	A	SNP	MACF1	ENST00000372925	human	ensembl	69_37n	1	novel	missense	c.11449	p.G3817R	0.160	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MACF1	HGNC	ENSG00000127603	92	0	0	111	34	23.13	-	-	-	A	39918358	G	A	39918358	3	1	592	1	0	0	0	0	1	0	0	0	9211	1103	39	1	20920	1	MACF1	1	39918358	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09		39918358	209332263	1	52531										
TESK2	0	genome.wustl.edu	37	chr1	45821107	45821107	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tctagcaactgttccaggttCccggagttgatatactgcaa	9	10	1	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	45821107	45821107	C	T	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	silent	c.408	p.G136	0.996	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	70	0	0	80	24	23.08	-	-	-	T	45821107	C	T	45821107	2	4	592	1	0	0	0	0	0	0	0	1	15863	842	30	2		2	TESK2	1	45821107	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	5902749	45821107	203429514	2	52532										
INADL	0	genome.wustl.edu	37	chr1	62293124	62293124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tgcagctttatggaaaatctCgccgagaagcagtctccttt	9	10	2	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	62293124	62293124	C	T	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.1849	p.R617C	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	113	0	0	78	39	33.05	-	-	-	T	62293124	C	T	62293124	3	4	592	1	0	0	0	0	1	0	0	0	7785	884	31	1	1907	1	INADL	1	62293124	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	16472017	62293124	186957497	3	52533										
JAK1	0	genome.wustl.edu	37	chr1	65307285	65307285	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ctttcatagaatctctctttCtgtaaacaagaggggcacat	7	9	4	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	65307285	65307285	C	G	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	splice_site	c.2404-1	e17-1	1.000	-	-	-	no_errors	JAK1	HGNC	ENSG00000162434	48	0	0	41	10	19.61	-	-	-	G	65307285	C	G	65307285	5	3	592	1	0	0	0	0	0	0	1	0	7991	927	32	2	1093	2	JAK1	1	65307285	Splice_Site	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	3014161	65307285	183943336	4	52534										
FLG2	0	genome.wustl.edu	37	chr1	152329372	152329372	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	caaatctatgtgactgacaaGaacttgaagcattttgtggc	9	7	1	4			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	152329372	152329372	G	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.890	p.S297F	1.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	72	0	0	86	28	24.35	-	-	-	A	152329372	G	A	152329372	3	1	592	1	0	0	0	0	1	0	0	0	5969	942	33	2	6289	2	FLG2	1	152329372	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	87022087	152329372	96921249	5	52535										
GNPAT	0	genome.wustl.edu	37	chr1	231406538	231406538	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gaagaagttgtcccggccagCattcttctgcattccaacat	8	12	2	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	231406538	231406538	C	T	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	silent	c.1314	p.S438	0.015	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	71	0	0	117	27	18.75	-	-	-	T	231406538	C	T	231406538	2	4	592	1	0	0	0	0	0	0	0	1	6593	709	25	4		4	GNPAT	1	231406538	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	79077166	231406538	17844083	6	52536										
USP34	0	genome.wustl.edu	37	chr2	61575105	61575105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cccaatagtctccccaaggaAgtccccagttcgtgtgatac	8	14	1	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	61575105	61575105	A	G	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.2185	p.F729L	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	67	0	0	67	26	27.96	-	-	-	G	61575105	A	G	61575105	3	3	592	1	0	0	0	0	1	0	0	0	17162	72	3	5	8719	5	USP34	2	61575105	Missense_Mutation	SNP	A	TCGA-BH-A1EY-01A-11D-A13L-09		61575105	181624268	7	52537										
SLC4A5	0	genome.wustl.edu	37	chr2	74477542	74477542	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gtgatacagccgaggtagatGaataggatggcagagatgga	16	4	0	4			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	74477542	74477542	G	A	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	silent	c.1581	p.F527	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	97	0	0	68	16	19.05	-	-	-	A	74477542	G	A	74477542	2	1	592	1	0	0	0	0	0	0	0	1	14746	1281	45	2		2	SLC4A5	2	74477542	Silent	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	12902437	74477542	168721831	8	52538										
SMYD1	0	genome.wustl.edu	37	chr2	88405936	88405936	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cggatgctgagcattgtttcGgaggtcctttcctacctcca	10	12	0	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	88405936	88405936	G	A	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	silent	c.1074	p.S358	0.001	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	81	0	0	93	27	22.5	-	-	-	A	88405936	G	A	88405936	2	1	592	1	0	0	0	0	0	0	0	1	14910	1103	39	1		1	SMYD1	2	88405936	Silent	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	13928394	88405936	154793437	9	52539										
TTN	0	genome.wustl.edu	37	chr2	179527763	179527763	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ttttctgggaccacttccttCggtggcagcacttcaggcac	10	13	2	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	179527763	179527763	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.31503	p.P10501	0.001	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	80	0	0	94	21	18.26	-	-	-	T	179527763	C	T	179527763	2	4	592	1	0	0	0	0	0	0	0	1	16832	871	31	1		1	TTN	2	179527763	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	91121827	179527763	63671610	10	52540										
PGAP1	0	genome.wustl.edu	37	chr2	197744811	197744811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	acttgttaccttacttccacGaacagatggtacataaacaa	5	10	0	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	197744811	197744811	G	A	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.1339	p.R447C	0.979	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	81	0	0	75	27	26.47	-	-	-	A	197744811	G	A	197744811	3	1	592	1	0	0	0	0	1	0	0	0	11851	1058	37	1	1489	1	PGAP1	2	197744811	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	18217048	197744811	45454562	11	52541										
SPHKAP	0	genome.wustl.edu	37	chr2	228882873	228882873	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tcccctaacaaggacaggttGacttgaacttcgttgatgcg	10	10	0	3			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	228882873	228882873	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	silent	c.2697	p.V899	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	129	0	0	151	54	26.34	-	-	-	T	228882873	G	T	228882873	2	4	592	1	0	0	0	0	0	0	0	1	15139	1277	45	2		2	SPHKAP	2	228882873	Silent	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	31138062	228882873	14316500	12	52542										
COL6A5	0	genome.wustl.edu	37	chr3	130120614	130120614	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tttttcccccagggaaatatTgcagagaggacttgctgctg	11	9	0	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	3	130120614	130120614	T	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.4143	p.I1381M	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	76	0	0	68	25	26.88	-	-	-	G	130120614	T	G	130120614	3	3	592	1	0	0	0	0	1	0	0	0	3732	1800	63	5	4185	5	COL6A5	3	130120614	Missense_Mutation	SNP	T	TCGA-BH-A1EY-01A-11D-A13L-09		130120614	67901816	13	52543										
SEC24D	0	genome.wustl.edu	37	chr4	119718868	119718868	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ggaatggtggcaaagggcttGatgacagcagctaatggaat	15	5	0	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	4	119718868	119718868	G	C	SNP	SEC24D	ENST00000379735	human	ensembl	69_37n	-1	known	missense	c.1014	p.I338M	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961	80	0	0	58	27	31.76	-	-	-	C	119718868	G	C	119718868	3	2	592	1	0	0	0	0	1	0	0	0	14085	1280	45	2	2151	2	SEC24D	4	119718868	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09		119718868	71435408	14	52544										
SLC26A4	0	genome.wustl.edu	37	chr7	107353011	107353011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tcattcaggattgtaaagatAcccttgaattaatagaaaca	6	6	2	3			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	107353011	107353011	A	G	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.2263	p.T755A	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	154	0	0	159	51	24.29	-	-	-	G	107353011	A	G	107353011	3	3	592	1	0	0	0	0	1	0	0	0	14608	391	14	5	2337	5	SLC26A4	7	107353011	Missense_Mutation	SNP	A	TCGA-BH-A1EY-01A-11D-A13L-09		107353011	51785652	15	52545										
MLL3	0	genome.wustl.edu	37	chr7	151860481	151860481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tacgttcccgttcttgaaaaCtttcactaaagggattgttg	8	8	2	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	151860481	151860481	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.10181	p.S3394N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	80	0	0	106	45	29.61	-	-	-	T	151860481	C	T	151860481	3	4	592	1	0	0	0	0	1	0	0	0	9693	565	20	4	4622	4	MLL3	7	151860481	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	44507470	151860481	7278182	16	52546										
PINX1	0	genome.wustl.edu	37	chr8	10623041	10623041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gcttcagggtgaagtcccggCcctcaggcggctgcacatgg	15	13	2	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	10623041	10623041	C	T	SNP	PINX1	ENST00000314787	human	ensembl	69_37n	-1	known	missense	c.857	p.G286D	0.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	PINX1	HGNC	ENSG00000254093	91	0	0	58	35	36.46	-	-	-	T	10623041	C	T	10623041	3	4	592	1	0	0	0	0	1	0	0	0	12007	739	26	4	133	4	PINX1	8	10623041	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		10623041	135740981	17	52547										
TGS1	0	genome.wustl.edu	37	chr8	56723652	56723652	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ttagaacaatgatgtctcctGatggatatcctttggaagtc	9	7	1	3			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	56723652	56723652	G	C	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.2356	p.D786H	1.000	pfam_RNA_cap_Gua-N2-MeTrfase	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	123	0	0	107	45	29.41	-	-	-	C	56723652	G	C	56723652	3	2	592	1	0	0	0	0	1	0	0	0	15932	1290	45	2	2398	2	TGS1	8	56723652	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	46100611	56723652	89640370	18	52548										
RSPO2	0	genome.wustl.edu	37	chr8	108973037	108973037	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gcaagaatcacagttttctaTtctgcatcctaaaaacaatt	4	9	3	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	108973037	108973037	T	A	SNP	RSPO2	ENST00000276659	human	ensembl	69_37n	-1	known	missense	c.292	p.I98L	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	superfamily_Growth_fac_rcpt,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO2	HGNC	ENSG00000147655	54	0	0	79	15	15.96	-	-	-	A	108973037	T	A	108973037	3	1	592	1	0	0	0	0	1	0	0	0	13796	1493	52	5	451	5	RSPO2	8	108973037	Missense_Mutation	SNP	T	TCGA-BH-A1EY-01A-11D-A13L-09	52249385	108973037	37390985	19	52549										
DCAF10	0	genome.wustl.edu	37	chr9	37861271	37861271	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	aaagaactttgcttcagcccCgatggacgaatgatttcttc	8	10	2	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	9	37861271	37861271	C	G	SNP	DCAF10	ENST00000377724	human	ensembl	69_37n	1	known	silent	c.1446	p.P482	0.968	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF10	HGNC	ENSG00000122741	92	0	0	84	30	26.32	-	-	-	G	37861271	C	G	37861271	2	3	592	1	0	0	0	0	0	0	0	1	4293	639	23	3		3	DCAF10	9	37861271	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		37861271	103352160	20	52550										
ANK3	0	genome.wustl.edu	37	chr10	61833656	61833656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cgatgtggacttctattataCgctccagtttgggtttcatt	9	8	2	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	61833656	61833656	C	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.6983	p.R2328H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	73	0	0	47	21	30.88	-	-	-	T	61833656	C	T	61833656	3	4	592	1	0	0	0	0	1	0	0	0	622	536	19	1	6491	1	ANK3	10	61833656	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		61833656	73701091	21	52551										
SEC31B	0	genome.wustl.edu	37	chr10	102266117	102266117	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cggcacaagatctggctgtcCttagcactagtgagcagcag	12	11	1	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	102266117	102266117	C	T	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	silent	c.843	p.K281	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	45	0	0	94	17	15.32	-	-	-	T	102266117	C	T	102266117	2	4	592	1	0	0	0	0	0	0	0	1	14087	680	24	4		4	SEC31B	10	102266117	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	40432461	102266117	33268630	22	52552										
ADD3	0	genome.wustl.edu	37	chr10	111860429	111860429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	aacatgagctcagatgccagCcaaggcgtgattaccactcc	9	13	1	3			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	111860429	111860429	C	T	SNP	ADD3	ENST00000356080	human	ensembl	69_37n	1	known	silent	c.18	p.S6	0.987	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700	38	0	0	47	75	61.48	-	-	-	T	111860429	C	T	111860429	2	4	592	1	0	0	0	0	0	0	0	1	306	738	26	4		4	ADD3	10	111860429	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	9594312	111860429	23674318	23	52553										
GUCY2C	0	genome.wustl.edu	37	chr12	14774139	14774139	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gccaccatgtacgcatcaccGatggtttccacctgtggaaa	9	13	1	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	14774139	14774139	G	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	silent	c.2613	p.I871	0.989	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	87	0	0	90	31	25.62	-	-	-	A	14774139	G	A	14774139	2	1	592	1	0	0	0	0	0	0	0	1	6947	1048	37	1		1	GUCY2C	12	14774139	Silent	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09		14774139	119077756	24	52554										
GUCY2C	0	genome.wustl.edu	37	chr12	14822720	14822720	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	aatgtggggctcatatccacAggataggtcttatttacgtg	11	7	2	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	14822720	14822720	A	C	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	silent	c.1218	p.P406	0.000	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	142	0	0	143	40	21.86	-	-	-	C	14822720	A	C	14822720	2	2	592	1	0	0	0	0	0	0	0	1	6947	175	7	5		5	GUCY2C	12	14822720	Silent	SNP	A	TCGA-BH-A1EY-01A-11D-A13L-09	48581	14822720	119029175	25	52555										
ITPR2	0	genome.wustl.edu	37	chr12	26818867	26818867	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gccagtatgttttgttccctCatcaatttttgacgctctcg	7	11	3	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	26818867	26818867	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.1527	p.M509I	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	153	0	0	147	49	25	-	-	-	T	26818867	C	T	26818867	3	4	592	1	0	0	0	0	1	0	0	0	7975	826	29	2	6754	2	ITPR2	12	26818867	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	11996147	26818867	107033028	26	52556										
USP15	0	genome.wustl.edu	37	chr12	62749202	62749202	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	agaaacaatgaacagccaggCctctgtggcctaagtaactt	9	10	1	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	62749202	62749202	C	G	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	silent	c.861	p.G287	1.000	pfam_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	110	0	0	104	33	24.09	-	-	-	G	62749202	C	G	62749202	2	3	592	1	0	0	0	0	0	0	0	1	17143	726	26	4		4	USP15	12	62749202	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	35930335	62749202	71102693	27	52557										
ZFYVE19	0	genome.wustl.edu	37	chr15	41099876	41099876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	attccctgctctaggtcgcgGcgggacagtgccagtgggcg	16	12	1	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	15	41099876	41099876	G	T	SNP	ZFYVE19	ENST00000355341	human	ensembl	69_37n	1	known	missense	c.89	p.G30V	0.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE19	HGNC	ENSG00000166140	31	0	0	51	12	18.75	-	-	-	T	41099876	G	T	41099876	3	4	592	1	0	0	0	0	1	0	0	0	17761	1203	42	4	91	4	ZFYVE19	15	41099876	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09		41099876	61431516	28	52558										
DYX1C1	0	genome.wustl.edu	37	chr15	55727242	55727242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tagctgccaaatagttttccGttgcaaacaatttgctaatg	7	8	0	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	15	55727242	55727242	G	A	SNP	DYX1C1	ENST00000321149	human	ensembl	69_37n	-1	known	missense	c.908	p.T303M	0.872	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_CS_domain,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS-like_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061	70	0	0	79	25	23.81	-	-	-	A	55727242	G	A	55727242	3	1	592	1	0	0	0	0	1	0	0	0	4897	1145	40	1	469	1	DYX1C1	15	55727242	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	14627366	55727242	46804150	29	52559										
TP53	0	genome.wustl.edu	37	chr17	7578553	7578553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	tcttgttgagggcaggggagTactgtaggaagaggaaggag	19	3	1	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	7578553	7578553	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.377	p.Y126C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	24	22	47.83	-	-	-	C	7578553	T	C	7578553	3	2	592	1	0	0	0	0	1	0	0	0	16477	1652	57	5	921	5	TP53	17	7578553	Missense_Mutation	SNP	T	TCGA-BH-A1EY-01A-11D-A13L-09		7578553	73616657	30	52560										
ALOXE3	0	genome.wustl.edu	37	chr17	7999968	7999968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gatggagacgctgttctcaaTgaggggagggtccaggtagg	18	6	1	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	7999968	7999968	T	A	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	missense	c.2509	p.I837F	0.920	superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	164	0	0	127	51	28.65	-	-	-	A	7999968	T	A	7999968	3	1	592	1	0	0	0	0	1	0	0	0	542	1464	51	5	26	5	ALOXE3	17	7999968	Missense_Mutation	SNP	T	TCGA-BH-A1EY-01A-11D-A13L-09	421415	7999968	73195242	31	52561										
MAP2K4	0	genome.wustl.edu	37	chr17	12044463	12044463	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ttgttttcaattttcttgcaGaaacatccctttattttgat	4	7	2	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	12044463	12044463	G	C	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site	c.1120-1	e12-1	1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	127	0	0	109	53	32.72	-	-	-	C	12044463	G	C	12044463	5	2	592	1	0	0	0	0	0	0	1	0	9310	956	33	2	1128	2	MAP2K4	17	12044463	Splice_Site	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	4044495	12044463	69150747	32	52562										
CCDC144A	0	genome.wustl.edu	37	chr17	16612273	16612273	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cataaatgagttaaagcagaGgtttggtgaaatttatgaaa	10	2	0	4			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	16612273	16612273	G	C	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.902	p.R301T	0.975	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	106	0	0	82	42	33.87	-	-	-	C	16612273	G	C	16612273	3	2	592	1	0	0	0	0	1	0	0	0	2802	1000	35	4	920	4	CCDC144A	17	16612273	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	4567810	16612273	64582937	33	52563										
ARHGAP35	0	genome.wustl.edu	37	chr19	47422652	47422652	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gtaaacgtggacttggctttCagcaccttagtgcaactcat	9	10	2	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	47422652	47422652	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	silent	c.720	p.F240	1.000	pfam_Small_GTPase	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	47	0	0	29	21	42	-	-	-	T	47422652	C	T	47422652	2	4	592	1	0	0	0	0	0	0	0	1	6846	825	29	2		2	ARHGAP35	19	47422652	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		47422652	11706331	34	52564										
VRK3	0	genome.wustl.edu	37	chr19	50491661	50491661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ttcatgatgtcctcagtgttGggaaggcaatttgtccatgg	12	7	2	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	50491661	50491661	G	A	SNP	VRK3	ENST00000316763	human	ensembl	69_37n	-1	known	silent	c.1185	p.P395	0.985	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK3	HGNC	ENSG00000105053	72	0	0	105	27	20.45	-	-	-	A	50491661	G	A	50491661	2	1	592	1	0	0	0	0	0	0	0	1	17318	1335	47	4		4	VRK3	19	50491661	Silent	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	3069009	50491661	8637322	35	52565										
ZNF331	0	genome.wustl.edu	37	chr19	54080627	54080627	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	catagtggggagaagccttaCgagtgtaaagactgtgggaa	15	5	0	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	54080627	54080627	C	G	SNP	ZNF331	ENST00000253144	human	ensembl	69_37n	1	known	nonsense	c.813	p.Y271*	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844	39	0	0	41	13	24.07	-	-	-	G	54080627	C	G	54080627	4	3	592	1	0	0	0	0	0	1	0	0	17945	547	19	3	823	3	ZNF331	19	54080627	Nonsense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09	3588966	54080627	5048356	36	52566										
NCR1	0	genome.wustl.edu	37	chr19	55417683	55417683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gtctgagtcagaggatcagcGcccagcagcgtgagtccttc	13	12	3	3			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	55417683	55417683	G	A	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	1	known	missense	c.61	p.A21T	0.000	NULL	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	93	0	0	90	24	21.05	-	-	-	A	55417683	G	A	55417683	3	1	592	1	0	0	0	0	1	0	0	0	10309	1087	38	1	67	1	NCR1	19	55417683	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	1337056	55417683	3711300	37	52567										
SEL1L2	0	genome.wustl.edu	37	chr20	13846124	13846124	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gtaagctgtcaggaatttctCagcccagtggcctagttcac	10	11	3	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	20	13846124	13846124	C	A	SNP	SEL1L2	ENST00000284951	human	ensembl	69_37n	-1	known	nonsense	c.1441	p.E481*	1.000	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	58	0	0	66	19	22.35	-	-	-	A	13846124	C	A	13846124	4	1	592	1	0	0	0	0	0	1	0	0	14099	835	29	2	645	2	SEL1L2	20	13846124	Nonsense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		13846124	49179396	38	52568										
CHD6	0	genome.wustl.edu	37	chr20	40143457	40143457	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	gctgtacctggctgtctgtaGactcagtggactcctcagga	12	11	3	1			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	20	40143457	40143457	G	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.689	p.S230C	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	87	0	0	99	29	22.66	-	-	-	C	40143457	G	C	40143457	3	2	592	1	0	0	0	0	1	0	0	0	3358	942	33	2	7594	2	CHD6	20	40143457	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09	26297333	40143457	22882063	39	52569										
COL18A1	0	genome.wustl.edu	37	chr21	46875461	46875461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cccgatggctccctacccctGtggctgccacatcctgctgc	9	19	0	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	21	46875461	46875461	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	missense	c.17	p.C6Y	0.788	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	34	0	0	24	5	16.67	-	-	-	A	46875461	G	A	46875461	3	1	592	1	0	0	0	0	1	0	0	0	3705	1377	48	4	133	4	COL18A1	21	46875461	Missense_Mutation	SNP	G	TCGA-BH-A1EY-01A-11D-A13L-09		46875461	1254434	40	52570										
MGAT3	0	genome.wustl.edu	37	chr22	39884229	39884229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	ggatcgccgacgactacctgCgcaccttcctcacccaggac	9	18	1	0			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	22	39884229	39884229	C	T	SNP	MGAT3	ENST00000341184	human	ensembl	69_37n	1	known	missense	c.877	p.R293C	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268	15	0	0	6	5	45.45	-	-	-	T	39884229	C	T	39884229	3	4	592	1	0	0	0	0	1	0	0	0	9615	768	27	1	879	1	MGAT3	22	39884229	Missense_Mutation	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		39884229	11420337	41	52571										
MAGEB1	0	genome.wustl.edu	37	chrX	30268685	30268685	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.238095238095238	10	0.0567852146440243	2.1875	4.2	1.27272727272727	0.680172297752053	1	0	cgagaggagacccagggtctCaaggttgctcacgccactgc	13	13	2	2			TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	X	30268685	30268685	C	G	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	silent	c.75	p.L25	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	30	0	0	38	9	19.15	-	-	-	G	30268685	C	G	30268685	2	3	592	1	0	0	0	0	0	0	0	1	9243	813	29	2		2	MAGEB1	23	30268685	Silent	SNP	C	TCGA-BH-A1EY-01A-11D-A13L-09		30268685	125001875	42	52572										
ELTD1	0	genome.wustl.edu	37	chr1	79357327	79357327	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	catggagaaccccaaagatcCaggtggtgccgagaaggaac	13	10	0	3			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	79357327	79357327	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	nonsense	c.1892	p.W631*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	109	0	0	96	32	25	-	-	-	T	79357327	C	T	79357327	4	4	593	1	0	0	0	0	0	1	0	0	5121	595	21	4	188	4	ELTD1	1	79357327	Nonsense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09		79357327	169893294	1	52573										
BCAR3	0	genome.wustl.edu	37	chr1	94048116	94048116	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ctgtcatcatcatcaaggatCaagtagttgacgccagagtt	9	9	5	2			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	94048116	94048116	C	G	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.1428	p.L476F	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	227	0	0	192	24	11.11	-	-	-	G	94048116	C	G	94048116	3	3	593	1	0	0	0	0	1	0	0	0	1353	825	29	2	1073	2	BCAR3	1	94048116	Missense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09	14690789	94048116	155202505	2	52574										
CR1	0	genome.wustl.edu	37	chr1	207796386	207796386	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	tttactcatcattttcctctCttggataattctaaagcaca	3	10	4	0			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	207796386	207796386	C	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.7325	p.S2442Y	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	709	0	0	589	163	21.68	-	-	-	A	207796386	C	A	207796386	3	1	593	1	0	0	0	0	1	0	0	0	3870	913	32	2	7503	2	CR1	1	207796386	Missense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09	113748270	207796386	41454235	3	52575										
GALNT2	0	genome.wustl.edu	37	chr1	230384985	230384985	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	atgacgcctgagcagagaagGtcccggcaggggaacccagt	15	11	0	3			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	230384985	230384985	G	A	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	1	known	silent	c.873	p.R291	0.785	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	198	0	0	194	33	14.54	-	-	-	A	230384985	G	A	230384985	2	1	593	1	0	0	0	0	0	0	0	1	6263	1252	44	4		4	GALNT2	1	230384985	Silent	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09	22588599	230384985	18865636	4	52576										
ASXL2	0	genome.wustl.edu	37	chr2	25967231	25967231	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ttgggcttttgctttgatgtCtgcaagagttctggctcctg	12	8	2	2			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	2	25967231	25967231	C	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1975	p.D659N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	243	0	0	174	28	13.79	-	-	-	T	25967231	C	T	25967231	3	4	593	1	0	0	0	0	1	0	0	0	1071	913	32	2	2336	2	ASXL2	2	25967231	Missense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09		25967231	217232142	5	52577										
ZDBF2	0	genome.wustl.edu	37	chr2	207170990	207170990	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	actatggatcgagttgttctGaaacaagttttgattgtgat	10	4	1	3			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	2	207170990	207170990	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	nonsense	c.1738	p.E580*	0.900	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	340	0	0	359	72	16.71	-	-	-	T	207170990	G	T	207170990	4	4	593	1	0	0	0	0	0	1	0	0	17695	1291	45	2	1748	2	ZDBF2	2	207170990	Nonsense_Mutation	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09	181203759	207170990	36028383	6	52578										
NT5E	0	genome.wustl.edu	37	chr6	86201888	86201888	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	aaagatgaattattaagacaTgactctggtaagcatgactg	9	5	1	5			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	86201888	86201888	T	C	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	1	known	silent	c.1554	p.H518	0.971	superfamily_5'-Nucleotdase_C	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	164	0	0	167	23	12.11	-	-	-	C	86201888	T	C	86201888	2	2	593	1	0	0	0	0	0	0	0	1	10766	1461	51	5		5	NT5E	6	86201888	Silent	SNP	T	TCGA-BH-A1F0-01A-11D-A135-09		86201888	84913179	7	52579										
SGK1	0	genome.wustl.edu	37	chr6	134492799	134492799	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ccatacagcatctcatacaaGacagctcccaggcaccacca	5	17	1	1			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	134492799	134492799	G	C	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	silent	c.1143	p.V381	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	159	1	0.62	895	173	16.15	-	-	-	C	134492799	G	C	134492799	2	2	593	1	0	0	0	0	0	0	0	1	14295	929	33	2		2	SGK1	6	134492799	Silent	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09	48290911	134492799	36622268	8	52580										
SGK1	0	genome.wustl.edu	37	chr6	134493422	134493422	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	taaggacaatgtgtccctgtGaatctagcaaaatattctct	7	8	2	1			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	134493422	134493422	G	T	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	nonsense	c.980	p.S327*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	415	3	0.72	2301	408	15.04	-	-	-	T	134493422	G	T	134493422	4	4	593	1	0	0	0	0	0	1	0	0	14295	1294	45	2	620	2	SGK1	6	134493422	Nonsense_Mutation	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09	623	134493422	36621645	9	52581										
ITGB8	0	genome.wustl.edu	37	chr7	20441487	20441487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	tgtcagtgtgaggacaacagAggacctaaaggaaagtgtgt	14	5	1	2			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	7	20441487	20441487	A	T	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	1	known	missense	c.1425	p.R475S	0.012	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	463	0	0	401	64	13.76	-	-	-	T	20441487	A	T	20441487	3	4	593	1	0	0	0	0	1	0	0	0	7955	301	11	5	1463	5	ITGB8	7	20441487	Missense_Mutation	SNP	A	TCGA-BH-A1F0-01A-11D-A135-09		20441487	138697176	10	52582										
ABCB1	0	genome.wustl.edu	37	chr7	87148753	87148753	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	gggtgaaggaaaatgtaattCcaaagatgtgtgctttcctc	11	6	0	2			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	7	87148753	87148753	C	G	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2816	p.G939A	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	236	0	0	218	29	11.74	-	-	-	G	87148753	C	G	87148753	3	3	593	1	0	0	0	0	1	0	0	0	40	855	30	2	1050	2	ABCB1	7	87148753	Missense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09	66707266	87148753	71989910	11	52583										
GPC5	0	genome.wustl.edu	37	chr13	92345944	92345944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	gtatgggatactgcctcaatGtcatgcgaggctgcctggcg	14	10	2	0			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	13	92345944	92345944	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.829	p.V277I	0.943	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	114	0	0	93	16	14.68	-	-	-	A	92345944	G	A	92345944	3	1	593	1	0	0	0	0	1	0	0	0	6651	1377	48	4	839	4	GPC5	13	92345944	Missense_Mutation	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09		92345944	22823934	12	52584										
ACOT2	0	genome.wustl.edu	37	chr14	74042189	74042189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ccacaaacacttgggtggccAcgaggggacaatcccatcaa	10	13	1	0			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	14	74042189	74042189	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	missense	c.1424	p.H475R	0.000	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	9	0	0	16	9	36	-	-	-	G	74042189	A	G	74042189	3	3	593	1	0	0	0	0	1	0	0	0	152	159	6	5	1434	5	ACOT2	14	74042189	Missense_Mutation	SNP	A	TCGA-BH-A1F0-01A-11D-A135-09		74042189	33307351	13	52585										
TP53	0	genome.wustl.edu	37	chr17	7578491	7578491	+	Frame_Shift_Del	DEL	C	C	-													0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	gggcgggggtgtggaatcaaCccacagctgcacagggcagg							TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	17	7578491	7578491	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.439	p.V147fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	128	0	0	112	36	23.84	-	-	-	-	7578491	C	-	7578491	7	5	593	1	0	1	0	1	0	0	0	0	16477	507	18	0	859	0	TP53	17	7578491	Frame_Shift_Del	DEL	C	TCGA-BH-A1F0-01A-11D-A135-09		7578491	73616719	14	52586										
TBC1D3	0	genome.wustl.edu	37	chr17	36340138	36340138	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	gattcttgttatcggcatcaAcgcctgttcgccttctacca	7	13	3	0			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	26	0	0	32	7	17.5	-	-	-	G	36340138	A	G	36340138	2	3	593	1	0	0	0	0	0	0	0	1	15712	40	2	5		5	TBC1D3	17	36340138	Silent	SNP	A	TCGA-BH-A1F0-01A-11D-A135-09	28761647	36340138	44855072	15	52587										
ANKRD24	0	genome.wustl.edu	37	chr19	4217300	4217300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ccatcctacatcctggtgccGcagaggcctcggaaaagctt	10	14	0	1			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	19	4217300	4217300	G	A	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	1	known	missense	c.2413	p.A805T	0.232	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	37	0	0	34	5	12.82	-	-	-	A	4217300	G	A	4217300	3	1	593	1	0	0	0	0	1	0	0	0	653	1087	38	1	2209	1	ANKRD24	19	4217300	Missense_Mutation	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09		4217300	54911683	16	52588										
SYMPK	0	genome.wustl.edu	37	chr19	46319770	46319770	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	ggccccgcaggcgcctccttGgcctctggctcctgcttgcc	12	19	1	0			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	19	46319770	46319770	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	silent	c.3324	p.A1108	1.000	NULL	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	92	0	0	76	22	22.45	-	-	-	A	46319770	G	A	46319770	2	1	593	1	0	0	0	0	0	0	0	1	15531	1335	47	4		4	SYMPK	19	46319770	Silent	SNP	G	TCGA-BH-A1F0-01A-11D-A135-09	42102470	46319770	12809213	17	52589										
TSHZ2	0	genome.wustl.edu	37	chr20	51870526	51870526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	aagacgctctgtccaaaagcCtgcagcagaacttgccttct	8	13	2	2			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	20	51870526	51870526	C	A	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.529	p.L177M	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	106	0	0	118	29	19.73	-	-	-	A	51870526	C	A	51870526	3	1	593	1	0	0	0	0	1	0	0	0	16720	680	24	4	535	4	TSHZ2	20	51870526	Missense_Mutation	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09		51870526	11154994	18	52590										
OPN1LW	0	genome.wustl.edu	37	chrX	153416306	153416306	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	3	0.479717513739179	1.97678571428571	4.39285714285714	0.941326530612245	1	1	0	atcctggtgaacctggcggtCgctgacctagcagagaccgt	13	12	0	3			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	X	153416306	153416306	C	T	SNP	OPN1LW	ENST00000369951	human	ensembl	69_37n	1	known	silent	c.291	p.V97	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076	188	0	0	166	19	10.22	-	-	-	T	153416306	C	T	153416306	2	4	593	1	0	0	0	0	0	0	0	1	10950	871	31	1		1	OPN1LW	23	153416306	Silent	SNP	C	TCGA-BH-A1F0-01A-11D-A135-09		153416306	1854254	19	52591										
SPTA1	0	genome.wustl.edu	37	chr1	158604413	158604413	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gatccaagcttcctcttcctCagcattctgcatgaattgca	6	13	3	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	158604413	158604413	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.5485	p.E1829Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	86	0	0	267	55	17.08	-	-	-	G	158604413	C	G	158604413	3	3	594	1	0	0	0	0	1	0	0	0	15207	835	29	2	1830	2	SPTA1	1	158604413	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		158604413	90646208	1	52592										
LAMC1	0	genome.wustl.edu	37	chr1	183090900	183090900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	caccctggcaagtgctcgtcCtgggcctggagtccctgcaa	12	15	0	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	183090900	183090900	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.2033	p.P678L	0.985	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	68	0	0	199	86	30.18	-	-	-	T	183090900	C	T	183090900	3	4	594	1	0	0	0	0	1	0	0	0	8668	681	24	4	2079	4	LAMC1	1	183090900	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	24486487	183090900	66159721	2	52593										
TROVE2	0	genome.wustl.edu	37	chr1	193038629	193038629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gcatgtggggtcgtgccctcCggaaggctatagcggactgg	17	10	0	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	193038629	193038629	C	T	SNP	TROVE2	ENST00000367441	human	ensembl	69_37n	1	known	missense	c.445	p.R149W	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747	46	0	0	102	13	11.3	-	-	-	T	193038629	C	T	193038629	3	4	594	1	0	0	0	0	1	0	0	0	16672	643	23	1	447	1	TROVE2	1	193038629	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	9947729	193038629	56211992	3	52594										
CFH	0	genome.wustl.edu	37	chr1	196696041	196696041	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	atcaattacgtgtattcatgGagtatggacccaacttcccc	7	11	2	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	196696041	196696041	G	C	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.2207	p.G736A	0.966	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	50	0	0	95	19	16.67	-	-	-	C	196696041	G	C	196696041	3	2	594	1	0	0	0	0	1	0	0	0	3312	1174	41	2	2279	2	CFH	1	196696041	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	3657412	196696041	52554580	4	52595										
CFHR5	0	genome.wustl.edu	37	chr1	196973945	196973945	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	actgtaacatgcagaaataaAcagtggtcagaaccaccaag	8	9	1	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	196973945	196973945	A	G	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	silent	c.1557	p.K519	0.050	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	71	0	0	105	68	39.08	-	-	-	G	196973945	A	G	196973945	2	3	594	1	0	0	0	0	0	0	0	1	3317	40	2	5		5	CFHR5	1	196973945	Silent	SNP	A	TCGA-BH-A1F2-01A-31D-A13L-09	277904	196973945	52276676	5	52596										
BATF3	0	genome.wustl.edu	37	chr1	212860284	212860284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tcagcttcccgatctctctcCgcagcatggtgttttcttgc	8	14	4	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	212860284	212860284	C	T	SNP	BATF3	ENST00000243440	human	ensembl	69_37n	-1	known	missense	c.233	p.R78Q	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,prints_Leuzip_Fos,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,prints_Leuzip_Fos,pfscan_bZIP	-	no_errors	BATF3	HGNC	ENSG00000123685	57	0	0	149	42	21.99	-	-	-	T	212860284	C	T	212860284	3	4	594	1	0	0	0	0	1	0	0	0	1331	652	23	1	154	1	BATF3	1	212860284	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	15886339	212860284	36390337	6	52597										
SCCPDH	0	genome.wustl.edu	37	chr1	246890254	246890254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tgatattgctaatccagcctCgcttgatgaaatggctaaac	8	9	0	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	1	246890254	246890254	C	T	SNP	SCCPDH	ENST00000366510	human	ensembl	69_37n	1	known	missense	c.251	p.S84L	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653	58	0	0	275	36	11.58	-	-	-	T	246890254	C	T	246890254	3	4	594	1	0	0	0	0	1	0	0	0	13972	893	31	1	257	1	SCCPDH	1	246890254	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	34029970	246890254	2360367	7	52598										
ATAD2B	0	genome.wustl.edu	37	chr2	23980928	23980928	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ttccttttcttaataattccTttaccccactgtgatctccg	3	13	2	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	23980928	23980928	T	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.3438	p.K1146N	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	26	0	0	74	17	18.68	-	-	-	A	23980928	T	A	23980928	3	1	594	1	0	0	0	0	1	0	0	0	1076	1606	56	5	954	5	ATAD2B	2	23980928	Missense_Mutation	SNP	T	TCGA-BH-A1F2-01A-31D-A13L-09		23980928	219218445	8	52599										
AFF3	0	genome.wustl.edu	37	chr2	100194863	100194863	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ggagaccacggcttcgtctgCggccgtgacttgtggagggg	18	10	1	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	100194863	100194863	C	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	silent	c.2919	p.P973	0.649	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	61	0	0	115	52	30.95	-	-	-	T	100194863	C	T	100194863	2	4	594	1	0	0	0	0	0	0	0	1	358	755	27	1		1	AFF3	2	100194863	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	76213935	100194863	143004510	9	52600										
ACVR2A	0	genome.wustl.edu	37	chr2	148676044	148676044	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	atcagactttcttaaggctaAtgtggtctcttggaatgaac	9	7	3	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	148676044	148676044	A	T	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.845	p.N282I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	96	0	0	192	75	28.09	-	-	-	T	148676044	A	T	148676044	3	4	594	1	0	0	0	0	1	0	0	0	223	101	4	5	871	5	ACVR2A	2	148676044	Missense_Mutation	SNP	A	TCGA-BH-A1F2-01A-31D-A13L-09	48481181	148676044	94523329	10	52601										
TTN	0	genome.wustl.edu	37	chr2	179497253	179497253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tatttgataaaactatttacCttcaatgatcagtttgccac	4	8	2	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	179497253	179497253	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.35776	p.G11926R	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	76	0	0	120	27	18.37	-	-	-	T	179497253	C	T	179497253	3	4	594	1	0	0	0	0	1	0	0	0	16832	695	24	4	64725	4	TTN	2	179497253	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	30821209	179497253	63702120	11	52602										
DNAH7	0	genome.wustl.edu	37	chr2	196762433	196762433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gataaaaattttggcagattTacatcaatgatagatctaag	7	4	2	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	196762433	196762433	T	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.4605	p.V1535	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	56	0	0	69	45	39.47	-	-	-	C	196762433	T	C	196762433	2	2	594	1	0	0	0	0	0	0	0	1	4641	1741	61	5		5	DNAH7	2	196762433	Silent	SNP	T	TCGA-BH-A1F2-01A-31D-A13L-09	17265180	196762433	46436940	12	52603										
NBEAL1	0	genome.wustl.edu	37	chr2	204030948	204030948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	aactcattacaataattgatGtaattcctggcagattagaa	6	6	1	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	2	204030948	204030948	G	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.5704	p.V1902L	0.553	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	71	0	0	152	22	12.64	-	-	-	T	204030948	G	T	204030948	3	4	594	1	0	0	0	0	1	0	0	0	10260	1377	48	4	5842	4	NBEAL1	2	204030948	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	7268515	204030948	39168425	13	52604										
C3orf24	0	genome.wustl.edu	37	chr3	10146113	10146113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gtctgaaactctgaaagtccCggtccactttggtggctgag	12	10	2	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	3	10146113	10146113	C	T	SNP	C3orf24	ENST00000450660	human	ensembl	69_37n	-1	known	missense	c.346	p.G116R	0.996	NULL	NULL	-	no_errors	C3orf24	HGNC	ENSG00000163705	75	0	0	100	68	40.24	-	-	-	T	10146113	C	T	10146113	3	4	594	1	0	0	0	0	1	0	0	0	2237	652	23	1	191	1	C3orf24	3	10146113	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		10146113	187876317	14	52605										
DBR1	0	genome.wustl.edu	37	chr3	137886067	137886067	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cggaaaaaagatttagtcttAagaagttgcttcttatttcc	7	6	2	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	3	137886067	137886067	A	C	SNP	DBR1	ENST00000260803	human	ensembl	69_37n	-1	known	silent	c.570	p.L190	0.963	pfam_Metallo_PEstase_dom	pfam_DBR1_C,pfam_Metallo_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231	43	0	0	56	27	32.53	-	-	-	C	137886067	A	C	137886067	2	2	594	1	0	0	0	0	0	0	0	1	4289	349	13	5		5	DBR1	3	137886067	Silent	SNP	A	TCGA-BH-A1F2-01A-31D-A13L-09	127739954	137886067	60136363	15	52606										
WWC2	0	genome.wustl.edu	37	chr4	184129264	184129264	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tggccctggatgaatacgtgCgattaaatgatgcctataag	11	7	0	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	4	184129264	184129264	C	T	SNP	WWC2	ENST00000448232	human	ensembl	69_37n	1	known	nonsense	c.400	p.R134*	0.995	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC2	HGNC	ENSG00000151718	22	0	0	44	27	38.03	-	-	-	T	184129264	C	T	184129264	4	4	594	1	0	0	0	0	0	1	0	0	17509	760	27	1	410	1	WWC2	4	184129264	Nonsense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		184129264	7025012	16	52607										
FBXL7	0	genome.wustl.edu	37	chr5	15928218	15928218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ggagcaggccagcatagaccGgctcccggaccactccatgg	13	15	0	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	5	15928218	15928218	G	A	SNP	FBXL7	ENST00000504595	human	ensembl	69_37n	1	known	missense	c.347	p.R116Q	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL7	HGNC	ENSG00000183580	10	0	0	9	7	43.75	-	-	-	A	15928218	G	A	15928218	3	1	594	1	0	0	0	0	1	0	0	0	5770	1116	39	1	357	1	FBXL7	5	15928218	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09		15928218	164987042	17	52608										
C7orf57	0	genome.wustl.edu	37	chr7	48080992	48080992	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gtggatgccccaccagcgtcCcagatcccaggtctcagcaa	10	16	1	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	7	48080992	48080992	C	T	SNP	C7orf57	ENST00000348904	human	ensembl	69_37n	1	known	silent	c.117	p.S39	0.994	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746	25	0	0	33	8	19.51	-	-	-	T	48080992	C	T	48080992	2	4	594	1	0	0	0	0	0	0	0	1	2427	610	22	4		4	C7orf57	7	48080992	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		48080992	111057671	18	52609										
CNBD1	0	genome.wustl.edu	37	chr8	87878778	87878778	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ctcacatgacagctattaacAatgtgcctcctcctccactt	4	15	1	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	8	87878778	87878778	A	G	SNP	CNBD1	ENST00000518476	human	ensembl	69_37n	1	known	missense	c.55	p.N19D	0.670	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	59	0	0	248	57	18.69	-	-	-	G	87878778	A	G	87878778	3	3	594	1	0	0	0	0	1	0	0	0	3621	130	5	5	57	5	CNBD1	8	87878778	Missense_Mutation	SNP	A	TCGA-BH-A1F2-01A-31D-A13L-09		87878778	58485244	19	52610										
VPS13B	0	genome.wustl.edu	37	chr8	100832306	100832306	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ttgaaggagagaaaattgttCtacaggttcctgctggcaaa	11	6	1	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	8	100832306	100832306	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.9025	p.L3009	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	70	0	0	165	25	13.16	-	-	-	T	100832306	C	T	100832306	2	4	594	1	0	0	0	0	0	0	0	1	17287	912	32	2		2	VPS13B	8	100832306	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	12953528	100832306	45531716	20	52611										
CNTNAP3	0	genome.wustl.edu	37	chr9	39177396	39177396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tccacggtgaagttgacctgCgtgtcgaggagctcgatgag	15	9	0	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	9	39177396	39177396	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	silent	c.846	p.T282	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	62	0	0	137	30	17.96	-	-	-	T	39177396	C	T	39177396	2	4	594	1	0	0	0	0	0	0	0	1	3678	755	27	1		1	CNTNAP3	9	39177396	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		39177396	102036035	21	52612										
PCSK5	0	genome.wustl.edu	37	chr9	78789962	78789962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cgtgcagccatattcaccaaCcaatgaatttccgaaagtgg	8	11	1	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	9	78789962	78789962	C	G	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.1817	p.T606S	1.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	74	0	0	101	47	31.76	-	-	-	G	78789962	C	G	78789962	3	3	594	1	0	0	0	0	1	0	0	0	11676	507	18	4	1871	4	PCSK5	9	78789962	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	39612566	78789962	62423469	22	52613										
FAM171A1	0	genome.wustl.edu	37	chr10	15256166	15256166	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	ccgaggactcgtagccttctCtttccatagattttcttgcc	7	13	2	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	10	15256166	15256166	C	A	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.1421	p.R474I	0.019	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	28	0	0	75	13	14.77	-	-	-	A	15256166	C	A	15256166	3	1	594	1	0	0	0	0	1	0	0	0	5530	913	32	2	1255	2	FAM171A1	10	15256166	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		15256166	120278581	23	52614										
FRMPD2	0	genome.wustl.edu	37	chr10	49450274	49450274	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cagcaggggctgggtagacaGacacttctttctcatgaacc	11	11	2	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	10	49450274	49450274	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.497	p.S166F	0.464	superfamily_Kinase-like_dom,smart_KIND	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	33	0	0	71	10	12.35	-	-	-	A	49450274	G	A	49450274	3	1	594	1	0	0	0	0	1	0	0	0	6107	942	33	2	3532	2	FRMPD2	10	49450274	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	34194108	49450274	86084473	24	52615										
OR52E8	0	genome.wustl.edu	37	chr11	5878074	5878074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	attgagggctggtgggacaaCcacatacaggttggctaata	13	7	0	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	11	5878074	5878074	C	G	SNP	OR52E8	ENST00000537935	human	ensembl	69_37n	-1	known	missense	c.859	p.V287L	0.038	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269	43	0	0	145	28	16.09	-	-	-	G	5878074	C	G	5878074	3	3	594	1	0	0	0	0	1	0	0	0	11191	507	18	4	96	4	OR52E8	11	5878074	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		5878074	129128442	25	52616										
OR5B3	0	genome.wustl.edu	37	chr11	58170702	58170702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cactagagacaagttactgaGaaaaaagtacatgggattgt	10	5	0	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	11	58170702	58170702	G	C	SNP	OR5B3	ENST00000309403	human	ensembl	69_37n	-1	known	missense	c.181	p.L61V	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B3	HGNC	ENSG00000172769	32	0	0	87	16	15.53	-	-	-	C	58170702	G	C	58170702	3	2	594	1	0	0	0	0	1	0	0	0	11225	942	33	2	765	2	OR5B3	11	58170702	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	52292628	58170702	76835814	26	52617										
RPS6KB2	0	genome.wustl.edu	37	chr11	67196636	67196636	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gagctgactgagaccagcgtGaacgttggcccagagcgcat	14	11	0	4			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	11	67196636	67196636	G	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	silent	c.165	p.V55	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	23	0	0	24	9	27.27	-	-	-	A	67196636	G	A	67196636	2	1	594	1	0	0	0	0	0	0	0	1	13743	1277	45	2		2	RPS6KB2	11	67196636	Silent	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	9025934	67196636	67809880	27	52618										
PUS1	0	genome.wustl.edu	37	chr12	132426329	132426329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cttcgagaagtacaaccagcGctttggcaacgatgggctgc	12	11	0	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	12	132426329	132426329	G	A	SNP	PUS1	ENST00000376649	human	ensembl	69_37n	1	known	missense	c.1037	p.R346H	1.000	superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192	21	0	0	41	10	19.61	-	-	-	A	132426329	G	A	132426329	3	1	594	1	0	0	0	0	1	0	0	0	12913	1087	38	1	1055	1	PUS1	12	132426329	Missense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09		132426329	1425566	28	52619										
TUBA3C	0	genome.wustl.edu	37	chr13	19752468	19752468	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tggcgtaattattggccgcaTcttccttcccggtgatcagc	10	12	2	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	13	19752468	19752468	T	A	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	missense	c.293	p.D98V	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	84	0	0	228	39	14.55	-	-	-	A	19752468	T	A	19752468	3	1	594	1	0	0	0	0	1	0	0	0	16843	1435	50	5	1071	5	TUBA3C	13	19752468	Missense_Mutation	SNP	T	TCGA-BH-A1F2-01A-31D-A13L-09		19752468	95417410	29	52620										
ABCC4	0	genome.wustl.edu	37	chr13	95861807	95861807	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	agtagggcagtcactgcaatCgcctgcagtggtcctgccca	12	13	1	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	13	95861807	95861807	C	A	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	silent	c.666	p.A222	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	19	0	0	41	34	45.33	-	-	-	A	95861807	C	A	95861807	2	1	594	1	0	0	0	0	0	0	0	1	55	871	31	3		3	ABCC4	13	95861807	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	76109339	95861807	19308071	30	52621										
ATG2B	0	genome.wustl.edu	37	chr14	96777942	96777942	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tccaaaagccccatatccatCacacgaacataatctaaaat	2	13	2	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	14	96777942	96777942	C	A	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	silent	c.3927	p.V1309	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	52	0	0	67	14	17.28	-	-	-	A	96777942	C	A	96777942	2	1	594	1	0	0	0	0	0	0	0	1	1098	813	29	2		2	ATG2B	14	96777942	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		96777942	10571598	31	52622										
EIF5	0	genome.wustl.edu	37	chr14	103803551	103803551	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	aaactctgcacattcattctCaaaaacccacctggtgagtc	5	13	3	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	14	103803551	103803551	C	G	SNP	EIF5	ENST00000216554	human	ensembl	69_37n	1	known	silent	c.426	p.L142	1.000	NULL	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664	41	0	0	104	40	27.78	-	-	-	G	103803551	C	G	103803551	2	3	594	1	0	0	0	0	0	0	0	1	5077	813	29	2		2	EIF5	14	103803551	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	7025609	103803551	3545989	32	52623										
TP53	0	genome.wustl.edu	37	chr17	7577085	7577085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	cttgcggagattctcttcctCtgtgcgccggtctctcccag	10	15	3	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	17	7577085	7577085	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.853	p.E285K	0.995	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	48	0	0	47	57	54.81	-	-	-	T	7577085	C	T	7577085	3	4	594	1	0	0	0	0	1	0	0	0	16477	922	32	2	433	2	TP53	17	7577085	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		7577085	73618125	33	52624										
GLP2R	0	genome.wustl.edu	37	chr17	9739689	9739689	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	acccttcttctctctgtaggCatattttgtaacgggacatt	7	10	3	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	17	9739689	9739689	C	A	SNP	GLP2R	ENST00000262441	human	ensembl	69_37n	1	known	silent	c.279	p.G93	0.000	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325	117	1	0.85	196	152	43.68	-	-	-	A	9739689	C	A	9739689	2	1	594	1	0	0	0	0	0	0	0	1	6505	724	25	4		4	GLP2R	17	9739689	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	2162604	9739689	71455521	34	52625										
FASN	0	genome.wustl.edu	37	chr17	80051484	80051486	+	In_Frame_Del	DEL	GAA	GAA	-													0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	caggacccacctctgaagtcGaagaagaaggagagccggtt							TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	17	80051484	80051486	GAA	-	DEL	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	in_frame_del	c.444_442	p.F148in_frame_del	0.962:1.000:1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	18	0	0	20	7	25.93	-	-	-	-	80051486	GAA	-	80051484	7	5	594	1	0	1	0	1	0	0	0	0	5729	1049	37	0	7251	0	FASN	17	80051484	In_Frame_Del	DEL	GAA	TCGA-BH-A1F2-01A-31D-A13L-09	70311795	80051484	1143726	35	52626										
ZNF284	0	genome.wustl.edu	37	chr19	44590278	44590278	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	taaggcatttagtcagaactCacaactgcaaactcatcaga	6	10	4	2			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	19	44590278	44590278	C	T	SNP	ZNF284	ENST00000421176	human	ensembl	69_37n	1	known	missense	c.647	p.S216L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF284	HGNC	ENSG00000186026	43	0	0	135	41	23.3	-	-	-	T	44590278	C	T	44590278	3	4	594	1	0	0	0	0	1	0	0	0	17917	838	29	2	661	2	ZNF284	19	44590278	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09		44590278	14538705	36	52627										
KLC3	0	genome.wustl.edu	37	chr19	45848976	45848976	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gcgggacagggcccggcagcCggcttggagatgctggagga	20	10	0	1			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	19	45848976	45848976	C	T	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	1	known	silent	c.219	p.A73	0.001	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	9	0	0	2	7	77.78	-	-	-	T	45848976	C	T	45848976	2	4	594	1	0	0	0	0	0	0	0	1	8388	639	23	1		1	KLC3	19	45848976	Silent	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	1258698	45848976	13280007	37	52628										
ZNF547	0	genome.wustl.edu	37	chr19	57883271	57883271	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	gaatttggcccttttgtcctCactaggtaaggccctcacac	8	13	2	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	19	57883271	57883271	C	T	SNP	ZNF547	ENST00000282282	human	ensembl	69_37n	1	known	missense	c.146	p.S49L	0.042	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433	137	0	0	419	95	18.45	-	-	-	T	57883271	C	T	57883271	3	4	594	1	0	0	0	0	1	0	0	0	18075	838	29	2	152	2	ZNF547	19	57883271	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	12034295	57883271	1245712	38	52629										
MAGED1	0	genome.wustl.edu	37	chrX	51640687	51640687	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	aatacactgatgtttatccaGaaatcattgaacgtgcatgc	7	8	1	3			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	X	51640687	51640687	G	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	nonsense	c.1699	p.E567*	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	90	0	0	129	36	21.82	-	-	-	T	51640687	G	T	51640687	4	4	594	1	0	0	0	0	0	1	0	0	9254	943	33	2	1721	2	MAGED1	23	51640687	Nonsense_Mutation	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09		51640687	103629873	39	52630										
EDA	0	genome.wustl.edu	37	chrX	68836476	68836476	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	atcaccagtcaccttgggcaGccgtcacctaagcagcagcc	9	16	3	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	X	68836476	68836476	G	A	SNP	EDA	ENST00000374552	human	ensembl	69_37n	1	known	silent	c.324	p.Q108	0.097	NULL	pfam_TNF,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,pfscan_TNF	-	no_errors	EDA	HGNC	ENSG00000158813	24	0	0	21	5	19.23	-	-	-	A	68836476	G	A	68836476	2	1	594	1	0	0	0	0	0	0	0	1	4938	962	34	4		4	EDA	23	68836476	Silent	SNP	G	TCGA-BH-A1F2-01A-31D-A13L-09	17195789	68836476	86434084	40	52631										
COL4A6	0	genome.wustl.edu	37	chrX	107435784	107435784	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.219512195121951	9	0.0388191874445231	2.44736842105263	3.53508771929825	2.12105263157895	0.400323058285099	0.991179622791967	5	tcctttaaggcctgggaggcCaggtacaccaggatctccag	12	12	1	0			TCGA-BH-A1F2-01A-31D-A13L-09	TCGA-BH-A1F2-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5c67494-d843-4b14-ba9c-d077396ed2dc	3b15c929-09bb-49b8-914c-b0a5e32ddd3e	X	107435784	107435784	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.1102	p.G368C	0.978	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	28	0	0	54	17	23.94	-	-	-	A	107435784	C	A	107435784	3	1	594	1	0	0	0	0	1	0	0	0	3725	594	21	4	4085	4	COL4A6	23	107435784	Missense_Mutation	SNP	C	TCGA-BH-A1F2-01A-31D-A13L-09	38599308	107435784	47834776	41	52632										
PRAMEF4	0	genome.wustl.edu	37	chr1	12942944	12942944	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tgggacgaacccctaggttaAgcagtgcatccagcccatcg	11	13	0	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	12942944	12942944	A	T	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.272	p.L91H	0.024	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	80	0	0	123	77	38.5	-	-	-	T	12942944	A	T	12942944	3	4	595	1	0	0	0	0	1	0	0	0	12517	72	3	5	1176	5	PRAMEF4	1	12942944	Missense_Mutation	SNP	A	TCGA-BH-A1F5-01A-12D-A13L-09		12942944	236307677	1	52633										
AK5	0	genome.wustl.edu	37	chr1	77984336	77984336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ctcaactggcgagctcctgcGtgaggaactggcatcagaat	12	11	2	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	77984336	77984336	G	A	SNP	AK5	ENST00000354567	human	ensembl	69_37n	1	known	missense	c.1235	p.R412H	0.761	pfam_Adenylate_kin,prints_Adenylate_kin,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	40	0	0	66	21	24.14	-	-	-	A	77984336	G	A	77984336	3	1	595	1	0	0	0	0	1	0	0	0	443	1145	40	1	1277	1	AK5	1	77984336	Missense_Mutation	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09	65041392	77984336	171266285	2	52634										
ILF2	0	genome.wustl.edu	37	chr1	153635506	153635506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tcccaatacctgctgttctaGggtcatgactgtgtgtactc	9	11	2	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	153635506	153635506	G	T	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	missense	c.910	p.L304I	1.000	pfam_DZF,smart_DZF	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	54	0	0	89	51	36.43	-	-	-	T	153635506	G	T	153635506	3	4	595	1	0	0	0	0	1	0	0	0	7765	991	35	4	274	4	ILF2	1	153635506	Missense_Mutation	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09	75651170	153635506	95615115	3	52635										
LRP1B	0	genome.wustl.edu	37	chr2	141806577	141806577	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tctttcaggatggtttctctCtctgtgccatctatcttctg	7	11	7	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	2	141806577	141806577	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.1767	p.E589	0.009	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	98	0	0	167	106	38.83	-	-	-	T	141806577	C	T	141806577	2	4	595	1	0	0	0	0	0	0	0	1	9021	912	32	2		2	LRP1B	2	141806577	Silent	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		141806577	101392796	4	52636										
RNF212	0	genome.wustl.edu	37	chr4	1107207	1107207	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	gaggctgaagcacgacgtccTgtggggcggctggaagcagc	18	10	0	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	4	1107207	1107207	T	G	SNP	RNF212	ENST00000433731	human	ensembl	69_37n	-1	known	silent	c.46	p.R16	0.000	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	13	0	0	16	15	48.39	-	-	-	G	1107207	T	G	1107207	2	3	595	1	0	0	0	0	0	0	0	1	13562	1579	55	5		5	RNF212	4	1107207	Silent	SNP	T	TCGA-BH-A1F5-01A-12D-A13L-09		1107207	190047069	5	52637										
MAP3K1	0	genome.wustl.edu	37	chr5	56160644	56160644	+	Frame_Shift_Del	DEL	C	C	-													0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	agccctgaggaaacaaaccgCcgtgttaacaaagtgatgcg							TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	56160644	56160644	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.918	p.R307fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	52	0	0	70	50	41.32	-	-	-	-	56160644	C	-	56160644	7	5	595	1	0	1	0	1	0	0	0	0	9314	726	26	0	932	0	MAP3K1	5	56160644	Frame_Shift_Del	DEL	C	TCGA-BH-A1F5-01A-12D-A13L-09		56160644	124754616	6	52638										
MAP3K1	0	genome.wustl.edu	37	chr5	56178169	56178169	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	aactttccccagtctttactCagtcaagacccttgccctcc	4	17	3	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	56178169	56178169	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3142	p.Q1048*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	41	0	0	41	25	37.88	-	-	-	T	56178169	C	T	56178169	4	4	595	1	0	0	0	0	0	1	0	0	9314	827	29	2	3196	2	MAP3K1	5	56178169	Nonsense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09	17525	56178169	124737091	7	52639										
RASGRF2	0	genome.wustl.edu	37	chr5	80381624	80381624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	cctctgtttgcatctagatcCccagatatatcatcacactc	4	14	4	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	80381624	80381624	C	T	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	missense	c.1165	p.P389S	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	67	0	0	62	47	43.12	-	-	-	T	80381624	C	T	80381624	3	4	595	1	0	0	0	0	1	0	0	0	13156	623	22	4	1195	4	RASGRF2	5	80381624	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09	24203455	80381624	100533636	8	52640										
BTNL8	0	genome.wustl.edu	37	chr5	180377494	180377494	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tcccagagacaagcaacagtGagtcctcctcacaggcaacc	8	15	1	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	180377494	180377494	G	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	1	known	missense	c.1453	p.E485K	0.001	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	13	0	0	38	26	40.62	-	-	-	A	180377494	G	A	180377494	3	1	595	1	0	0	0	0	1	0	0	0	1576	1291	45	2	1639	2	BTNL8	5	180377494	Missense_Mutation	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09	99995870	180377494	537766	9	52641										
TG	0	genome.wustl.edu	37	chr8	133984055	133984055	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ccaggttctttgaatgtgaaCgacggtgcgatgcggaccca	13	10	1	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	8	133984055	133984055	C	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	nonsense	c.5992	p.R1998*	0.182	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	71	0	0	207	56	21.21	-	-	-	T	133984055	C	T	133984055	4	4	595	1	0	0	0	0	0	1	0	0	15908	528	19	1	6122	1	TG	8	133984055	Nonsense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		133984055	12379967	10	52642										
ZNF462	0	genome.wustl.edu	37	chr9	109771899	109771899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ccatgtgaattttgtggacgGgcgttttcacagggctctga	13	8	2	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	9	109771899	109771899	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.7443	p.R2481	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	89	0	0	96	95	49.74	-	-	-	A	109771899	G	A	109771899	2	1	595	1	0	0	0	0	0	0	0	1	18022	1219	43	4		4	ZNF462	9	109771899	Silent	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09		109771899	31441532	11	52643										
PTGS1	0	genome.wustl.edu	37	chr9	125154645	125154645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	agggaatcccatctgttctcCggagtactggaagccgagca	12	11	2	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	9	125154645	125154645	C	T	SNP	PTGS1	ENST00000362012	human	ensembl	69_37n	1	known	missense	c.1622	p.P541L	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	37	0	0	72	12	14.29	-	-	-	T	125154645	C	T	125154645	3	4	595	1	0	0	0	0	1	0	0	0	12836	652	23	1	1664	1	PTGS1	9	125154645	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09	15382746	125154645	16058786	12	52644										
FRG2B	0	genome.wustl.edu	37	chr10	135439803	135439803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tccttgtttggattgggctcCgatcctgctgcaagagaagg	13	9	0	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	10	135439803	135439803	C	T	SNP	FRG2B	ENST00000443774	human	ensembl	69_37n	-1	known	silent	c.186	p.S62	0.213	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	9	0	0	16	7	30.43	-	-	-	T	135439803	C	T	135439803	2	4	595	1	0	0	0	0	0	0	0	1	6096	639	23	1		1	FRG2B	10	135439803	Silent	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		135439803	94944	13	52645										
PRPF19	0	genome.wustl.edu	37	chr11	60668993	60668993	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tcttgcgctccgtggttagcAcagtggctttgtcttgaagc	12	10	2	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	11	60668993	60668993	A	C	SNP	PRPF19	ENST00000227524	human	ensembl	69_37n	-1	known	missense	c.545	p.V182G	1.000	NULL	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107	66	0	0	106	40	27.4	-	-	-	C	60668993	A	C	60668993	3	2	595	1	0	0	0	0	1	0	0	0	12645	159	6	5	1009	5	PRPF19	11	60668993	Missense_Mutation	SNP	A	TCGA-BH-A1F5-01A-12D-A13L-09		60668993	74337523	14	52646										
PDE1B	0	genome.wustl.edu	37	chr12	54971012	54971012	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tttatgctcctctacaggcaTcaccaaccagatgtccattg	6	13	2	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	12	54971012	54971012	T	A	SNP	PDE1B	ENST00000243052	human	ensembl	69_37n	1	known	missense	c.1511	p.I504N	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	35	0	0	89	19	17.59	-	-	-	A	54971012	T	A	54971012	3	1	595	1	0	0	0	0	1	0	0	0	11707	1435	50	5	1622	5	PDE1B	12	54971012	Missense_Mutation	SNP	T	TCGA-BH-A1F5-01A-12D-A13L-09		54971012	78880883	15	52647										
TMED2	0	genome.wustl.edu	37	chr12	124081212	124081212	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ctttgaagctcttgttctagTtgccatgacattgggacaga	10	8	2	3			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	12	124081212	124081212	T	A	SNP	TMED2	ENST00000262225	human	ensembl	69_37n	1	known	missense	c.542	p.V181D	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598	89	0	0	109	71	39.44	-	-	-	A	124081212	T	A	124081212	3	1	595	1	0	0	0	0	1	0	0	0	16099	1725	60	5	556	5	TMED2	12	124081212	Missense_Mutation	SNP	T	TCGA-BH-A1F5-01A-12D-A13L-09	69110200	124081212	9770683	16	52648										
LRRC16B	0	genome.wustl.edu	37	chr14	24538005	24538005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	cctctgccagctacaggaccCcgctctagctccatggcctc	8	19	2	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	14	24538005	24538005	C	G	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.3812	p.P1271R	0.390	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	26	0	0	54	9	14.29	-	-	-	G	24538005	C	G	24538005	3	3	595	1	0	0	0	0	1	0	0	0	9038	623	22	4	3962	4	LRRC16B	14	24538005	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		24538005	82811535	17	52649										
CNOT1	0	genome.wustl.edu	37	chr16	58589747	58589747	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tattcgctggaaatagctgtTtgcttcatcatctatctctt	6	9	4	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	58589747	58589747	T	A	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.2545	p.N849Y	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	92	0	0	101	25	19.84	-	-	-	A	58589747	T	A	58589747	3	1	595	1	0	0	0	0	1	0	0	0	3647	1841	64	5	4927	5	CNOT1	16	58589747	Missense_Mutation	SNP	T	TCGA-BH-A1F5-01A-12D-A13L-09		58589747	31765006	18	52650										
CENPBD1	0	genome.wustl.edu	37	chr16	90038321	90038321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	agttgcatctgtgggcctttCcccaggcatttctgcctcca	9	14	2	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	90038321	90038321	C	T	SNP	CENPBD1	ENST00000314994	human	ensembl	69_37n	-1	known	missense	c.10	p.E4K	0.005	NULL	pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	CENPBD1	HGNC	ENSG00000177946	11	0	0	2	6	66.67	-	-	-	T	90038321	C	T	90038321	3	4	595	1	0	0	0	0	1	0	0	0	3257	864	30	2	557	2	CENPBD1	16	90038321	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09	31448574	90038321	316432	19	52651										
SLC2A4	0	genome.wustl.edu	37	chr17	7187613	7187613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ctcacagtgctacctgccctCctgcagctggtcctgctgcc	9	18	1	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	17	7187613	7187613	C	T	SNP	SLC2A4	ENST00000570783	human	ensembl	69_37n	1	known	missense	c.526	p.P176S	0.986	pfscan_MFS_dom	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Glc_transpt_4,pfscan_MFS_dom	-	no_errors	SLC2A4	HGNC	ENSG00000181856	27	0	0	31	16	34.04	-	-	-	T	7187613	C	T	7187613	3	4	595	1	0	0	0	0	1	0	0	0	14635	842	30	2	664	2	SLC2A4	17	7187613	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		7187613	74007597	20	52652										
PEG3	0	genome.wustl.edu	37	chr19	57327932	57327932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	ccacacaccttacattcgtaCattttctctttaccatacat	1	14	1	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	19	57327932	57327932	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1878	p.M626I	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	77	0	0	95	58	37.91	-	-	-	T	57327932	C	T	57327932	3	4	595	1	0	0	0	0	1	0	0	0	11793	478	17	4	2892	4	PEG3	19	57327932	Missense_Mutation	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09		57327932	1801051	21	52653										
FAM110A	0	genome.wustl.edu	37	chr20	826097	826097	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	cctggacccggaggaggcgaGagggttgggtgtggcccacc	19	11	0	1			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	20	826097	826097	G	T	SNP	FAM110A	ENST00000246100	human	ensembl	69_37n	1	known	missense	c.650	p.R217I	0.711	NULL	NULL	-	no_errors	FAM110A	HGNC	ENSG00000125898	18	0	0	22	5	18.52	-	-	-	T	826097	G	T	826097	3	4	595	1	0	0	0	0	1	0	0	0	5436	942	33	2	652	2	FAM110A	20	826097	Missense_Mutation	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09		826097	62199423	22	52654										
COL9A3	0	genome.wustl.edu	37	chr20	61467665	61467665	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tcccgggtgttcctggcatcAcggggaagccgggagttccg	16	12	1	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	20	61467665	61467665	A	T	SNP	COL9A3	ENST00000343916	human	ensembl	69_37n	1	known	missense	c.1528	p.T510S	0.995	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	33	0	0	24	22	47.83	-	-	-	T	61467665	A	T	61467665	3	4	595	1	0	0	0	0	1	0	0	0	3739	159	6	5	1638	5	COL9A3	20	61467665	Missense_Mutation	SNP	A	TCGA-BH-A1F5-01A-12D-A13L-09	60641568	61467665	1557855	23	52655										
ZGPAT	0	genome.wustl.edu	37	chr20	62366833	62366833	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	aagcgggccctgagcctgcgGctcttccagactgaggagaa	14	12	1	4			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	20	62366833	62366833	G	T	SNP	ZGPAT	ENST00000328969	human	ensembl	69_37n	1	known	silent	c.1374	p.R458	0.944	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114	17	0	0	22	15	40.54	-	-	-	T	62366833	G	T	62366833	2	4	595	1	0	0	0	0	0	0	0	1	17770	1190	42	4		4	ZGPAT	20	62366833	Silent	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09	899168	62366833	658687	24	52656										
DEPDC5	0	genome.wustl.edu	37	chr22	32188070	32188070	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tcctgttttctagaactttcTatgatgcaaaatctgttggt	7	7	3	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	22	32188070	32188070	T	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.676	p.Y226N	1.000	pfam_DUF3608	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	120	0	0	125	19	13.19	-	-	-	A	32188070	T	A	32188070	3	1	595	1	0	0	0	0	1	0	0	0	4478	1522	53	5	714	5	DEPDC5	22	32188070	Missense_Mutation	SNP	T	TCGA-BH-A1F5-01A-12D-A13L-09		32188070	19116496	25	52657										
ARAF	0	genome.wustl.edu	37	chrX	47430836	47430836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	tgcctgcctgcctactcagcGcagcccgccttgtgccttag	10	17	1	0			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	X	47430836	47430836	G	A	SNP	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	missense	c.1801	p.A601T	0.983	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	19	0	0	18	11	37.93	-	-	-	A	47430836	G	A	47430836	3	1	595	1	0	0	0	0	1	0	0	0	839	1087	38	1	1859	1	ARAF	23	47430836	Missense_Mutation	SNP	G	TCGA-BH-A1F5-01A-12D-A13L-09		47430836	107839724	26	52658										
PLXNB3	0	genome.wustl.edu	37	chrX	153032741	153032741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	3	0.618431527303103	1.57027027027027	0	1.68243243243243	0.142857142857143	0.62934362934363	0	gatgtggccgaggtgctgtaCcaggctgaggaccctggtga	17	9	0	2			TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	X	153032741	153032741	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	silent	c.528	p.Y176	0.624	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	29	0	0	29	15	34.09	-	-	-	T	153032741	C	T	153032741	2	4	595	1	0	0	0	0	0	0	0	1	12199	518	18	4		4	PLXNB3	23	153032741	Silent	SNP	C	TCGA-BH-A1F5-01A-12D-A13L-09	105601905	153032741	2237819	27	52659										
LRRC47	0	genome.wustl.edu	37	chr1	3697704	3697704	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tggccaggtcggccttggacGggtacaccaccttcaggctc	13	14	1	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	3697704	3697704	G	C	SNP	LRRC47	ENST00000378251	human	ensembl	69_37n	-1	known	missense	c.1700	p.P567R	0.999	NULL	pfam_Leu-rich_rpt,pfam_B3/B4_tRNA-bd,smart_Leu-rich_rpt_typical-subtyp,smart_B3/B4_tRNA-bd	-	no_errors	LRRC47	HGNC	ENSG00000130764	35	0	0	30	10	25	-	-	-	C	3697704	G	C	3697704	3	2	596	1	0	0	0	0	1	0	0	0	9070	1116	39	3	55	3	LRRC47	1	3697704	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		3697704	245552917	1	52660										
PRAMEF18	0	genome.wustl.edu	37	chr1	13474849	13474849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gaagtggggtgaggagctccGaaatgacacgacccctgttg	15	9	0	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	13474849	13474849	G	A	SNP	PRAMEF18	ENST00000376126	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427L	0.000	NULL	NULL	-	no_errors	PRAMEF18	HGNC	ENSG00000204491	34	0	0	19	3	13.64	-	-	-	A	13474849	G	A	13474849	3	1	596	1	0	0	0	0	1	0	0	0	12511	1059	37	1	163	1	PRAMEF18	1	13474849	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	9777145	13474849	235775772	2	52661										
SLC16A4	0	genome.wustl.edu	37	chr1	110919758	110919758	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tcagcaacccatccagaaatAatctgactgaccgtctcaag	6	13	3	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	110919758	110919758	A	C	SNP	SLC16A4	ENST00000369779	human	ensembl	69_37n	-1	known	missense	c.1056	p.I352M	0.477	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	108	0	0	19	8	29.63	-	-	-	C	110919758	A	C	110919758	3	2	596	1	0	0	0	0	1	0	0	0	14499	358	13	5	419	5	SLC16A4	1	110919758	Missense_Mutation	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09	97444909	110919758	138330863	3	52662										
MSH6	0	genome.wustl.edu	37	chr2	48027782	48027782	+	Frame_Shift_Del	DEL	T	T	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tggttttaagtctaaaatccTtaagcaggtcatctctctgc							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	48027782	48027782	T	-	DEL	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	frame_shift_del	c.2660	p.K888fs	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	45	0	0	14	2	12.5	-	-	-	-	48027782	T	-	48027782	7	5	596	1	0	1	0	1	0	0	0	0	9946	1609	56	0	2674	0	MSH6	2	48027782	Frame_Shift_Del	DEL	T	TCGA-BH-A1F6-01A-11D-A13L-09		48027782	195171591	4	52663										
MYO7B	0	genome.wustl.edu	37	chr2	128334255	128334255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gcagctgctgagcctgggcaCgccctccgagtaccactacc	11	17	0	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	128334255	128334255	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.821	p.T274M	0.001	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	33	0	0	32	4	11.11	-	-	-	T	128334255	C	T	128334255	3	4	596	1	0	0	0	0	1	0	0	0	10155	536	19	1	847	1	MYO7B	2	128334255	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	80306473	128334255	114865118	5	52664										
COBLL1	0	genome.wustl.edu	37	chr2	165551146	165551146	+	Frame_Shift_Del	DEL	A	A	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cagagtgaggcattttacttAagggagaaagagtctgctcc							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	165551146	165551146	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	frame_shift_del	c.3071	p.L1024fs	0.925	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	47	0	0	13	2	13.33	-	-	-	-	165551146	A	-	165551146	7	5	596	1	0	1	0	1	0	0	0	0	3684	372	13	0	642	0	COBLL1	2	165551146	Frame_Shift_Del	DEL	A	TCGA-BH-A1F6-01A-11D-A13L-09	37216891	165551146	77648227	6	52665										
TTN	0	genome.wustl.edu	37	chr2	179404659	179404659	+	Frame_Shift_Del	DEL	T	T	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tgccttacaaagataccttcTtggtatctttcatcaagttc							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	179404659	179404659	T	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.90429	p.E30144fs	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	81	0	0	13	2	13.33	-	-	-	-	179404659	T	-	179404659	7	5	596	1	0	1	0	1	0	0	0	0	16832	1606	56	0	9890	0	TTN	2	179404659	Frame_Shift_Del	DEL	T	TCGA-BH-A1F6-01A-11D-A13L-09	13853513	179404659	63794714	7	52666										
PASK	0	genome.wustl.edu	37	chr2	242065791	242065791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	agcatccaacgtggaaggaaCgtgtcctgggctttctctgt	12	10	1	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	242065791	242065791	C	G	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.2539	p.V847L	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	60	0	0	28	30	51.72	-	-	-	G	242065791	C	G	242065791	3	3	596	1	0	0	0	0	1	0	0	0	11545	536	19	3	1468	3	PASK	2	242065791	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	62661132	242065791	1133582	8	52667										
NDUFB5	0	genome.wustl.edu	37	chr3	179334812	179334812	+	Frame_Shift_Del	DEL	G	G	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttccagaaggctatgtcccaGaacactgggaatattataag							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	3	179334812	179334812	G	-	DEL	NDUFB5	ENST00000259037	human	ensembl	69_37n	1	known	frame_shift_del	c.322	p.E108fs	1.000	pfam_NADH_UbQ_OxRdtase_B5_su	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_errors	NDUFB5	HGNC	ENSG00000136521	52	0	0	14	2	12.5	-	-	-	-	179334812	G	-	179334812	7	5	596	1	0	1	0	1	0	0	0	0	10356	943	33	0	336	0	NDUFB5	3	179334812	Frame_Shift_Del	DEL	G	TCGA-BH-A1F6-01A-11D-A13L-09		179334812	18687618	9	52668										
KLHL6	0	genome.wustl.edu	37	chr3	183209883	183209883	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ataacctcgttcttctcgtcCcgcccgccggtgatgtagag	10	14	2	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	3	183209883	183209883	C	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.1698	p.R566	0.305	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	19	0	0	17	13	43.33	-	-	-	A	183209883	C	A	183209883	2	1	596	1	0	0	0	0	0	0	0	1	8446	610	22	4		4	KLHL6	3	183209883	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	3875071	183209883	14812547	10	52669										
NOP14	0	genome.wustl.edu	37	chr4	2945909	2945909	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tactccaggaacaggcagcaCacgaacaggcccttcaccac	8	16	1	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	2945909	2945909	C	T	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	silent	c.1782	p.V594	1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	60	0	0	32	4	11.11	-	-	-	T	2945909	C	T	2945909	2	4	596	1	0	0	0	0	0	0	0	1	10608	465	17	4		4	NOP14	4	2945909	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09		2945909	188208367	11	52670										
NFXL1	0	genome.wustl.edu	37	chr4	47901430	47901430	+	Frame_Shift_Del	DEL	A	A	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttatggccacaaggaggtttAaattcacgctcacatacttg							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	47901430	47901430	A	-	DEL	NFXL1	ENST00000381538	human	ensembl	69_37n	-1	known	frame_shift_del	c.783	p.F261fs	1.000	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448	50	0	0	15	2	11.76	-	-	-	-	47901430	A	-	47901430	7	5	596	1	0	1	0	1	0	0	0	0	10460	359	13	0	2024	0	NFXL1	4	47901430	Frame_Shift_Del	DEL	A	TCGA-BH-A1F6-01A-11D-A13L-09	44955521	47901430	143252846	12	52671										
INTU	0	genome.wustl.edu	37	chr4	128637566	128637566	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tgccattgaaatagcttttaAattgttctttgggttaacct	7	6	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	128637566	128637566	A	C	SNP	INTU	ENST00000335251	human	ensembl	69_37n	1	known	missense	c.2804	p.K935T	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	150	0	0	14	8	36.36	-	-	-	C	128637566	A	C	128637566	3	2	596	1	0	0	0	0	1	0	0	0	7840	14	1	5	2866	5	INTU	4	128637566	Missense_Mutation	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09	80736136	128637566	62516710	13	52672										
PCDHGA4	0	genome.wustl.edu	37	chr5	140735269	140735269	+	Frame_Shift_Del	DEL	C	C	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	atgtaggtgtaaactccctgCagggttaccagctcaactca							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	140735269	140735269	C	-	DEL	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	frame_shift_del	c.502	p.Q168fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	54	0	0	13	2	13.33	-	-	-	-	140735269	C	-	140735269	7	5	596	1	0	1	0	1	0	0	0	0	11629	711	25	0	504	0	PCDHGA4	5	140735269	Frame_Shift_Del	DEL	C	TCGA-BH-A1F6-01A-11D-A13L-09		140735269	40179991	14	52673										
PCDHGA11	0	genome.wustl.edu	37	chr5	140802474	140802474	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ctggaccagaacgacaatgcGcccgagatcctgtaccctgc	10	15	0	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	140802474	140802474	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	silent	c.1680	p.A560	0.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	65	0	0	11	13	54.17	-	-	-	A	140802474	G	A	140802474	2	1	596	1	0	0	0	0	0	0	0	1	11625	1074	38	1		1	PCDHGA11	5	140802474	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	67205	140802474	40112786	15	52674										
TCOF1	0	genome.wustl.edu	37	chr5	149755799	149755799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aggctcatccccagctgtggCtgggggcacccagagaccag	14	14	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	149755799	149755799	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	missense	c.2048	p.A683V	0.002	pfam_TCS_treacle	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	66	0	0	17	10	37.04	-	-	-	T	149755799	C	T	149755799	3	4	596	1	0	0	0	0	1	0	0	0	15803	797	28	4	2098	4	TCOF1	5	149755799	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	8953325	149755799	31159461	16	52675										
TNXB	0	genome.wustl.edu	37	chr6	32025869	32025869	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gcagacaccgggcccaggcgCcgcccctcgtggaggccgta	15	17	0	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	32025869	32025869	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.7791	p.R2597	0.325	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	15	0	0	11	4	26.67	-	-	-	T	32025869	C	T	32025869	2	4	596	1	0	0	0	0	0	0	0	1	16441	726	26	4		4	TNXB	6	32025869	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09		32025869	139089198	17	52676										
KIFC1	0	genome.wustl.edu	37	chr6	33374639	33374639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cgagtccctcaactctctacGctttgcctccaaggtgcgat	8	15	2	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	33374639	33374639	G	A	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.1964	p.R655H	0.997	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	98	0	0	53	7	11.67	-	-	-	A	33374639	G	A	33374639	3	1	596	1	0	0	0	0	1	0	0	0	8364	1087	38	1	2002	1	KIFC1	6	33374639	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	1348770	33374639	137740428	18	52677										
NPTX2	0	genome.wustl.edu	37	chr7	98257809	98257809	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gtccttcgcgcacaagaaatTgtcaacatcgccaactgctc	7	14	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	98257809	98257809	T	C	SNP	NPTX2	ENST00000265634	human	ensembl	69_37n	1	known	silent	c.1164	p.I388	0.333	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	70	0	0	53	12	18.46	-	-	-	C	98257809	T	C	98257809	2	2	596	1	0	0	0	0	0	0	0	1	10676	1800	63	5		5	NPTX2	7	98257809	Silent	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09		98257809	60880854	19	52678										
INTS10	0	genome.wustl.edu	37	chr8	19677944	19677944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tgaaatgttactaaaggtcaCggaacaatgcttcaacacgt	8	8	2	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	19677944	19677944	C	G	SNP	INTS10	ENST00000397977	human	ensembl	69_37n	1	known	missense	c.356	p.T119R	1.000	NULL	NULL	-	no_errors	INTS10	HGNC	ENSG00000104613	107	0	0	25	6	19.35	-	-	-	G	19677944	C	G	19677944	3	3	596	1	0	0	0	0	1	0	0	0	7830	536	19	3	370	3	INTS10	8	19677944	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09		19677944	126686078	20	52679										
FGFR1	0	genome.wustl.edu	37	chr8	38282147	38282147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	accttacacatgaactccacGttgctacccagggccactgt	7	15	0	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	38282147	38282147	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.909	p.N303	0.971	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	73	0	0	58	30	34.09	-	-	-	A	38282147	G	A	38282147	2	1	596	1	0	0	0	0	0	0	0	1	5909	1136	40	1		1	FGFR1	8	38282147	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	18604203	38282147	108081875	21	52680										
ASPH	0	genome.wustl.edu	37	chr8	62460693	62460693	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ggctgtgctttcagtccattCacattgtagagtgagcgttg	12	8	2	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	62460693	62460693	C	T	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	silent	c.1701	p.V567	0.996	NULL	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	74	0	0	43	19	30.65	-	-	-	T	62460693	C	T	62460693	2	4	596	1	0	0	0	0	0	0	0	1	1057	813	29	2		2	ASPH	8	62460693	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	24178546	62460693	83903329	22	52681										
OR1Q1	0	genome.wustl.edu	37	chr9	125377241	125377241	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	acagacatctgcttcacctcCaccacggtccccaagatgct	6	17	2	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	125377241	125377241	C	T	SNP	OR1Q1	ENST00000297913	human	ensembl	69_37n	1	known	silent	c.225	p.S75	0.577	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202	102	0	0	73	35	32.41	-	-	-	T	125377241	C	T	125377241	2	4	596	1	0	0	0	0	0	0	0	1	11044	581	21	4		4	OR1Q1	9	125377241	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09		125377241	15836190	23	52682										
ITGB1	0	genome.wustl.edu	37	chr10	33212629	33212629	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aaacccggcatctgtggaaaAcaccagcagccgtgtaacat	9	12	1	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	33212629	33212629	A	G	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	missense	c.826	p.F276L	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	24	0	0	20	9	29.03	-	-	-	G	33212629	A	G	33212629	3	3	596	1	0	0	0	0	1	0	0	0	7944	43	2	5	1848	5	ITGB1	10	33212629	Missense_Mutation	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09		33212629	102322118	24	52683										
ACTA2	0	genome.wustl.edu	37	chr10	90708572	90708572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tcctcacctgatgtctgggaCgtcccacaatggatgggaaa	11	11	2	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	90708572	90708572	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	69_37n	-1	known	missense	c.116	p.R39H	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA2	HGNC	ENSG00000107796	30	0	0	17	9	34.62	-	-	-	T	90708572	C	T	90708572	3	4	596	1	0	0	0	0	1	0	0	0	192	536	19	1	1049	1	ACTA2	10	90708572	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	57495943	90708572	44826175	25	52684										
OR2D2	0	genome.wustl.edu	37	chr11	6913561	6913561	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cagagaaaaaaatacatgggTgtgtgaagttgggagtcaac	13	4	1	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	6913561	6913561	T	G	SNP	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	silent	c.171	p.T57	0.996	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	82	0	0	49	9	15.52	-	-	-	G	6913561	T	G	6913561	2	3	596	1	0	0	0	0	0	0	0	1	11067	1683	59	5		5	OR2D2	11	6913561	Silent	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09		6913561	128092955	26	52685										
TSG101	0	genome.wustl.edu	37	chr11	18537699	18537699	+	Frame_Shift_Del	DEL	C	C	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tcattagttccctggaactgCcatcgttaaaaactgaaagg							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	18537699	18537699	C	-	DEL	TSG101	ENST00000251968	human	ensembl	69_37n	-1	known	frame_shift_del	c.140	p.G47fs	1.000	pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319	52	0	0	14	2	12.5	-	-	-	-	18537699	C	-	18537699	7	5	596	1	0	1	0	1	0	0	0	0	16712	739	26	0	1064	0	TSG101	11	18537699	Frame_Shift_Del	DEL	C	TCGA-BH-A1F6-01A-11D-A13L-09	11624138	18537699	116468817	27	52686										
C11orf82	0	genome.wustl.edu	37	chr11	82639858	82639858	+	Frame_Shift_Del	DEL	A	A	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ggctctactggtgaatctggAaatgccaattacagatacaa							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	82639858	82639858	A	-	DEL	C11orf82	ENST00000430323	human	ensembl	69_37n	1	known	frame_shift_del	c.153	p.N52fs	0.984	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	-	no_errors	C11orf82	HGNC	ENSG00000165490	88	0	0	13	2	13.33	-	-	-	-	82639858	A	-	82639858	7	5	596	1	0	1	0	1	0	0	0	0	1676	233	9	0	159	0	C11orf82	11	82639858	Frame_Shift_Del	DEL	A	TCGA-BH-A1F6-01A-11D-A13L-09	64102159	82639858	52366658	28	52687										
ATN1	0	genome.wustl.edu	37	chr12	7045008	7045008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tccttctgtgacacccactgGatatcatgctcccatggagc	8	14	2	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7045008	7045008	G	A	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.578	p.G193E	0.623	NULL	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	51	0	0	42	5	10.64	-	-	-	A	7045008	G	A	7045008	3	1	596	1	0	0	0	0	1	0	0	0	1115	1174	41	2	592	2	ATN1	12	7045008	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		7045008	126806887	29	52688										
C1RL	0	genome.wustl.edu	37	chr12	7249748	7249748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ctgggcaatgggggtgactgGccgtccgcagactgggagag	19	9	0	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7249748	7249748	G	A	SNP	C1RL	ENST00000266542	human	ensembl	69_37n	-1	known	missense	c.703	p.P235S	1.000	superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module	pfam_Peptidase_S1_S6,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178	40	0	0	25	4	13.79	-	-	-	A	7249748	G	A	7249748	3	1	596	1	0	0	0	0	1	0	0	0	1992	1203	42	4	764	4	C1RL	12	7249748	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	204740	7249748	126602147	30	52689										
ERBB3	0	genome.wustl.edu	37	chr12	56495328	56495328	+	Frame_Shift_Del	DEL	G	G	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cccaggtactccctcctcccGggaaggcaccctttcttcag							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	56495328	56495328	G	-	DEL	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	frame_shift_del	c.3518	p.E1174fs	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	52	0	0	16	2	11.11	-	-	-	-	56495328	G	-	56495328	7	5	596	1	0	1	0	1	0	0	0	0	5245	1116	39	0	3759	0	ERBB3	12	56495328	Frame_Shift_Del	DEL	G	TCGA-BH-A1F6-01A-11D-A13L-09	49245580	56495328	77356567	31	52690										
NAA25	0	genome.wustl.edu	37	chr12	112509715	112509715	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttacccagtttgtactcatcGttacaaccttgacttcgtaa	5	11	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	112509715	112509715	G	A	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	silent	c.1020	p.N340	0.108	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	70	0	0	23	4	14.81	-	-	-	A	112509715	G	A	112509715	2	1	596	1	0	0	0	0	0	0	0	1	10193	1136	40	1		1	NAA25	12	112509715	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	56014387	112509715	21342180	32	52691										
SBNO1	0	genome.wustl.edu	37	chr12	123800123	123800123	+	Frame_Shift_Del	DEL	G	G	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	caagtcttttagcaacaataGatgcaaatctttgttctcct							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	123800123	123800123	G	-	DEL	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	frame_shift_del	c.3020	p.S1007fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	109	0	0	30	7	18.92	-	-	-	-	123800123	G	-	123800123	7	5	596	1	0	1	0	1	0	0	0	0	13949	942	33	0	1205	0	SBNO1	12	123800123	Frame_Shift_Del	DEL	G	TCGA-BH-A1F6-01A-11D-A13L-09	11290408	123800123	10051772	33	52692										
SLITRK1	0	genome.wustl.edu	37	chr13	84453897	84453897	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aacgtgggcgagatcctagcGtacagctgagggcagatctc	14	10	1	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	84453897	84453897	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	silent	c.1746	p.Y582	0.990	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	80	0	0	55	12	17.91	-	-	-	A	84453897	G	A	84453897	2	1	596	1	0	0	0	0	0	0	0	1	14831	1140	40	1		1	SLITRK1	13	84453897	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		84453897	30715981	34	52693										
TMTC4	0	genome.wustl.edu	37	chr13	101264696	101264696	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cacgtttgccaacgagaacaTgagagagtgatcattaggta	11	7	1	4			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	101264696	101264696	T	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.2020	p.M674L	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	119	0	0	39	17	30.36	-	-	-	A	101264696	T	A	101264696	3	1	596	1	0	0	0	0	1	0	0	0	16358	1464	51	5	274	5	TMTC4	13	101264696	Missense_Mutation	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09	16810799	101264696	13905182	35	52694										
MMP14	0	genome.wustl.edu	37	chr14	23314529	23314529	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aagaacatcaaagtctgggaAgggatccctgagtctcccag	11	10	3	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	23314529	23314529	A	G	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	1	known	silent	c.1371	p.E457	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	48	0	0	17	12	41.38	-	-	-	G	23314529	A	G	23314529	2	3	596	1	0	0	0	0	0	0	0	1	9724	69	3	5		5	MMP14	14	23314529	Silent	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09		23314529	84035011	36	52695										
MBIP	0	genome.wustl.edu	37	chr14	36783776	36783776	+	Frame_Shift_Del	DEL	T	T	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttgttttcattgatttcagcTtgctttctttcaataaatgc							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	36783776	36783776	T	-	DEL	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	frame_shift_del	c.513	p.A172fs	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	86	0	0	10	2	16.67	-	-	-	-	36783776	T	-	36783776	7	5	596	1	0	1	0	1	0	0	0	0	9420	1606	56	0	545	0	MBIP	14	36783776	Frame_Shift_Del	DEL	T	TCGA-BH-A1F6-01A-11D-A13L-09	13469247	36783776	70565764	37	52696										
PSMA3	0	genome.wustl.edu	37	chr14	58727696	58727696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gggtcttacagtgtgaatgaCggtgcgcaactctacatgat	12	8	2	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	58727696	58727696	C	T	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	1	known	silent	c.435	p.D145	0.838	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567	80	0	0	25	4	13.79	-	-	-	T	58727696	C	T	58727696	2	4	596	1	0	0	0	0	0	0	0	1	12748	535	19	1		1	PSMA3	14	58727696	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	21943920	58727696	48621844	38	52697										
SMEK1	0	genome.wustl.edu	37	chr14	91937280	91937280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tatgtggtaggtatggtgctCcacacaaaatgttaacaatt	9	6	0	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	91937280	91937280	C	T	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	missense	c.1561	p.E521K	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	63	0	0	16	8	33.33	-	-	-	T	91937280	C	T	91937280	3	4	596	1	0	0	0	0	1	0	0	0	14882	864	30	2	964	2	SMEK1	14	91937280	Missense_Mutation	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	33209584	91937280	15412260	39	52698										
RYR3	0	genome.wustl.edu	37	chr15	34105734	34105734	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tatcaaagcaacggaaacggGcagtggtggcctgtttcagg	14	8	2	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34105734	34105734	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.10456	p.A3486P	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	48	0	0	20	8	28.57	-	-	-	C	34105734	G	C	34105734	3	2	596	1	0	0	0	0	1	0	0	0	13856	1203	42	4	10750	4	RYR3	15	34105734	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		34105734	68425658	40	52699										
RYR3	0	genome.wustl.edu	37	chr15	34140623	34140623	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cgcttggtgatcaacacaccGtgagtgtccctctaccccaa	8	15	2	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34140623	34140623	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	splice_site	c.13628+1	e94+1	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838	30	0	0	12	4	25	-	-	-	A	34140623	G	A	34140623	5	1	596	1	0	0	0	0	0	0	1	0	13856	1159	40	1	14003	1	RYR3	15	34140623	Splice_Site	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	34889	34140623	68390769	41	52700										
CCPG1	0	genome.wustl.edu	37	chr15	55653040	55653040	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttccttctccaaggatactcTtaaatactgattttctgtag	5	9	3	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	55653040	55653040	T	C	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.931	p.R311G	0.995	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	89	0	0	13	4	23.53	-	-	-	C	55653040	T	C	55653040	3	2	596	1	0	0	0	0	1	0	0	0	2967	1617	56	5	1346	5	CCPG1	15	55653040	Missense_Mutation	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09	21512417	55653040	46878352	42	52701										
EEF2K	0	genome.wustl.edu	37	chr16	22262009	22262009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	agcaatgagggagtgcttccGgacgtaagtgactcagcctg	14	9	1	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22262009	22262009	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	missense	c.443	p.R148Q	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	44	0	0	40	9	18.37	-	-	-	A	22262009	G	A	22262009	3	1	596	1	0	0	0	0	1	0	0	0	4965	1116	39	1	457	1	EEF2K	16	22262009	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		22262009	68092744	43	52702										
EEF2K	0	genome.wustl.edu	37	chr16	22295264	22295264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aagccatgaagggccgactgGccaaccagtactaccaaaag	10	12	0	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22295264	22295264	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	1	known	missense	c.2125	p.A709T	1.000	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	28	0	0	24	4	14.29	-	-	-	A	22295264	G	A	22295264	3	1	596	1	0	0	0	0	1	0	0	0	4965	1203	42	4	2191	4	EEF2K	16	22295264	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	33255	22295264	68059489	44	52703										
NAE1	0	genome.wustl.edu	37	chr16	66839867	66839867	+	Frame_Shift_Del	DEL	G	G	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	agataaaccatattcctgaaGgaagccagtgagacaagact							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	66839867	66839867	G	-	DEL	NAE1	ENST00000290810	human	ensembl	69_37n	-1	known	frame_shift_del	c.1393	p.L465fs	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593	68	0	0	14	2	12.5	-	-	-	-	66839867	G	-	66839867	7	5	596	1	0	1	0	1	0	0	0	0	10211	1000	35	0	223	0	NAE1	16	66839867	Frame_Shift_Del	DEL	G	TCGA-BH-A1F6-01A-11D-A13L-09	44544603	66839867	23514886	45	52704										
DUS2L	0	genome.wustl.edu	37	chr16	68087509	68087509	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tgtcgcccctgatgatcgagTtgtcttccgcacctgtgaaa	10	12	1	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	68087509	68087509	T	A	SNP	DUS2L	ENST00000358896	human	ensembl	69_37n	1	known	missense	c.215	p.V72D	0.992	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_Ds-RNA-bd,smart_Ds-RNA-bd	-	no_errors	DUS2L	HGNC	ENSG00000167264	56	0	0	43	28	39.44	-	-	-	A	68087509	T	A	68087509	3	1	596	1	0	0	0	0	1	0	0	0	4841	1725	60	5	225	5	DUS2L	16	68087509	Missense_Mutation	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09	1247642	68087509	22267244	46	52705										
NFAT5	0	genome.wustl.edu	37	chr16	69725862	69725862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gtacttttccagcagtttctGcttctagtcagctgcccaac	7	13	3	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	69725862	69725862	G	T	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	missense	c.2134	p.A712S	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	74	0	0	23	15	39.47	-	-	-	T	69725862	G	T	69725862	3	4	596	1	0	0	0	0	1	0	0	0	10432	1319	46	4	2184	4	NFAT5	16	69725862	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	1638353	69725862	20628891	47	52706										
TP53	0	genome.wustl.edu	37	chr17	7578551	7578551	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	catcttgttgagggcaggggAgtactgtaggaagaggaagg	18	4	1	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7578551	7578551	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.379	p.S127P	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0	15	14	48.28	-	-	-	G	7578551	A	G	7578551	3	3	596	1	0	0	0	0	1	0	0	0	16477	304	11	5	919	5	TP53	17	7578551	Missense_Mutation	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09		7578551	73616659	48	52707										
ALOX15B	0	genome.wustl.edu	37	chr17	7942523	7942523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cggagaagccttcggggctgGcacatgggacaaagtgtctg	16	9	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7942523	7942523	G	A	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	missense	c.50	p.G17D	0.991	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	39	0	0	16	10	38.46	-	-	-	A	7942523	G	A	7942523	3	1	596	1	0	0	0	0	1	0	0	0	539	1203	42	4	52	4	ALOX15B	17	7942523	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	363972	7942523	73252687	49	52708										
MYH2	0	genome.wustl.edu	37	chr17	10443330	10443330	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tgcatcacagcccccgtgagCttgtaaatggagaccttttc	9	12	1	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	10443330	10443330	C	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.1062	p.K354	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	121	0	0	30	23	43.4	-	-	-	T	10443330	C	T	10443330	2	4	596	1	0	0	0	0	0	0	0	1	10107	796	28	4		4	MYH2	17	10443330	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	2500807	10443330	70751880	50	52709										
TMEM106A	0	genome.wustl.edu	37	chr17	41365219	41365219	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ccttgtgaaggaactgctgaTgccagcttcgtgacttgtcc	11	11	0	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	41365219	41365219	T	G	SNP	TMEM106A	ENST00000331615	human	ensembl	69_37n	1	known	missense	c.159	p.D53E	0.002	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988	42	0	0	23	15	39.47	-	-	-	G	41365219	T	G	41365219	3	3	596	1	0	0	0	0	1	0	0	0	16115	1461	51	5	161	5	TMEM106A	17	41365219	Missense_Mutation	SNP	T	TCGA-BH-A1F6-01A-11D-A13L-09	30921889	41365219	39829991	51	52710										
MMD	0	genome.wustl.edu	37	chr17	53491548	53491548	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttagcagcatgttcatagcaAgttggcttgtagcggccatt	11	8	1	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	53491548	53491548	A	T	SNP	MMD	ENST00000262065	human	ensembl	69_37n	-1	known	silent	c.72	p.T24	0.968	pfam_HlyIII-related	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960	121	0	0	52	14	21.21	-	-	-	T	53491548	A	T	53491548	2	4	596	1	0	0	0	0	0	0	0	1	9714	59	3	5		5	MMD	17	53491548	Silent	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09	12126329	53491548	27703662	52	52711										
NPC1	0	genome.wustl.edu	37	chr18	21136530	21136530	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gcgtgtgaacagccgcctcaAgcagccctcaaatgctgcgc	11	15	2	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	18	21136530	21136530	A	T	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.1003	p.L335M	0.002	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	38	0	0	33	4	10.81	-	-	-	T	21136530	A	T	21136530	3	4	596	1	0	0	0	0	1	0	0	0	10642	69	3	5	2905	5	NPC1	18	21136530	Missense_Mutation	SNP	A	TCGA-BH-A1F6-01A-11D-A13L-09		21136530	56940718	53	52712										
ELP2	0	genome.wustl.edu	37	chr18	33716295	33716295	+	Frame_Shift_Del	DEL	A	A	-													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tctactgaattagtttctggAggatctgataatcaagtgat							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	18	33716295	33716295	A	-	DEL	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	frame_shift_del	c.243	p.G82fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	127	0	0	14	2	12.5	-	-	-	-	33716295	A	-	33716295	7	5	596	1	0	1	0	1	0	0	0	0	5117	291	11	0	253	0	ELP2	18	33716295	Frame_Shift_Del	DEL	A	TCGA-BH-A1F6-01A-11D-A13L-09	12579765	33716295	44360953	54	52713										
RFX2	0	genome.wustl.edu	37	chr19	6007781	6007781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	cacagcttctcgatgtagtgGaactggaggttcatcaccac	10	11	3	0			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	6007781	6007781	G	A	SNP	RFX2	ENST00000589340	human	ensembl	69_37n	-1	putative	missense	c.154	p.P52S	0.989	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RFX2	HGNC	ENSG00000087903	53	0	0	34	9	20.93	-	-	-	A	6007781	G	A	6007781	3	1	596	1	0	0	0	0	1	0	0	0	13346	1165	41	2	1036	2	RFX2	19	6007781	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09		6007781	53121202	55	52714										
SYDE1	0	genome.wustl.edu	37	chr19	15224594	15224594	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ctgtccgggccagactacgaCcacgtgacgggcagtgacag	14	13	0	3			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	15224594	15224594	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	silent	c.2028	p.D676	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	43	0	0	28	20	41.67	-	-	-	T	15224594	C	T	15224594	2	4	596	1	0	0	0	0	0	0	0	1	15527	506	18	4		4	SYDE1	19	15224594	Silent	SNP	C	TCGA-BH-A1F6-01A-11D-A13L-09	9216813	15224594	43904389	56	52715										
SIN3B	0	genome.wustl.edu	37	chr19	16976441	16976442	+	Frame_Shift_Ins	INS	-	-	C													0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	aagaaccctgtcaccgctgtINSccccgttgtcctgaaaaggt							TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	16976441	16976442	-	C	INS	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	frame_shift_ins	c.1700_1701	p.V569fs	0.974:0.500	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	11	0	0	15	6	28.57	-	-	-	C	16976442	-	C	16976441	7	5	596	1	0	1	1	0	0	0	0	0	14415	1667	58	0	1746	0	SIN3B	19	16976441	Frame_Shift_Ins	INS	-	TCGA-BH-A1F6-01A-11D-A13L-09	1751847	16976441	42152542	57	52716										
ZNF208	0	genome.wustl.edu	37	chr19	22155521	22155521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	atttgtagggtttctctacaGtatgaattttcttatgataa	7	4	2	2			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	22155521	22155521	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2315	p.T772I	0.989	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	37	0	0	14	5	26.32	-	-	-	A	22155521	G	A	22155521	3	1	596	1	0	0	0	0	1	0	0	0	17862	1029	36	4	1531	4	ZNF208	19	22155521	Missense_Mutation	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	5179080	22155521	36973462	58	52717										
PRX	0	genome.wustl.edu	37	chr19	40901699	40901699	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	gtctagctccactgaaggcaGagtgagagaggggacaccca	14	10	1	4			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40901699	40901699	G	A	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.2560	p.L854	0.155	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	23	0	0	133	35	20.83	-	-	-	A	40901699	G	A	40901699	2	1	596	1	0	0	0	0	0	0	0	1	12722	933	33	2		2	PRX	19	40901699	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	18746178	40901699	18227284	59	52718			1	90		3	3	1421	G		3.904632e-06
PRX	0	genome.wustl.edu	37	chr19	40902909	40902909	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	tcgggcacttttggaagcttGacctcaggagccttggggag	15	9	1	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40902909	40902909	G	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.1350	p.V450	0.483	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	18	0	0	30	11	26.83	-	-	-	C	40902909	G	C	40902909	2	2	596	1	0	0	0	0	0	0	0	1	12722	1277	45	2		2	PRX	19	40902909	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	1210	40902909	18226074	60	52719			1	90		3	3	1421	G		3.904632e-06
PRX	0	genome.wustl.edu	37	chr19	40903119	40903119	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0655737704918033	4	0.884573867541399	0.997093023255814	2.65891472868217	0.613595706618962	1	1	0	ttcaccctggcctcagggctGaccttggctaccttggcctc	10	16	2	1			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40903119	40903119	G	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.1140	p.V380	0.426	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	10	0	0	24	11	31.43	-	-	-	C	40903119	G	C	40903119	2	2	596	1	0	0	0	0	0	0	0	1	12722	1277	45	2		2	PRX	19	40903119	Silent	SNP	G	TCGA-BH-A1F6-01A-11D-A13L-09	210	40903119	18225864	61	52720			1	90		3	3	1421	G		3.904632e-06
GRHL3	0	genome.wustl.edu	37	chr1	24657969	24657969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agtcaacttgcagaaattctCttacactagtgaggatgagg	10	7	2	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	24657969	24657969	C	G	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	1	known	missense	c.71	p.S24C	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	77	0	0	40	46	53.49	-	-	-	G	24657969	C	G	24657969	3	3	597	1	0	0	0	0	1	0	0	0	6816	913	32	2	113	2	GRHL3	1	24657969	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		24657969	224592652	1	52721										
OXCT2	0	genome.wustl.edu	37	chr1	40235448	40235448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccccgtgctctttttgatgtCgtccaccgtcaggccctccc	8	18	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	40235448	40235448	C	T	SNP	OXCT2	ENST00000327582	human	ensembl	69_37n	-1	known	missense	c.1480	p.D494N	0.171	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754	24	0	0	33	13	28.26	-	-	-	T	40235448	C	T	40235448	3	4	597	1	0	0	0	0	1	0	0	0	11403	884	31	1	77	1	OXCT2	1	40235448	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	15577479	40235448	209015173	2	52722										
ARHGAP29	0	genome.wustl.edu	37	chr1	94668277	94668277	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tttgcctttttgagagcattCtctgcttcaagctacaccga	7	11	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	94668277	94668277	C	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.966	p.E322D	0.983	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	117	0	0	65	97	59.88	-	-	-	G	94668277	C	G	94668277	3	3	597	1	0	0	0	0	1	0	0	0	880	912	32	2	2871	2	ARHGAP29	1	94668277	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	54432829	94668277	154582344	3	52723										
SLC25A24	0	genome.wustl.edu	37	chr1	108742651	108742651	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gctcgccgatgtccaccactCcgtccccattgcggtccagt	9	18	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	108742651	108742651	C	G	SNP	SLC25A24	ENST00000565488	human	ensembl	69_37n	-1	known	missense	c.110	p.G37A	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A24	HGNC	ENSG00000085491	14	0	0	11	5	31.25	-	-	-	G	108742651	C	G	108742651	3	3	597	1	0	0	0	0	1	0	0	0	14576	855	30	2	1493	2	SLC25A24	1	108742651	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	14074374	108742651	140507970	4	52724										
SETDB1	0	genome.wustl.edu	37	chr1	150931666	150931667	+	Frame_Shift_Ins	INS	-	-	A													0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctcccagggtatatgagtgtINSaacaaacgctgcaaatgtga							TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	150931666	150931667	-	A	INS	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	frame_shift_ins	c.2343_2344	p.N781fs	1.000:1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	85	0	0	110	67	37.85	-	-	-	A	150931667	-	A	150931666	7	5	597	1	0	1	1	0	0	0	0	0	14226	1644	57	0	2397	0	SETDB1	1	150931666	Frame_Shift_Ins	INS	-	TCGA-BH-A1F8-01A-11D-A13L-09	42189015	150931666	98318955	5	52725										
FLG	0	genome.wustl.edu	37	chr1	152279012	152279012	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cgggtgtccacgaatggtgtCctgaccgtcttgggatgctg	15	10	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	152279012	152279012	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8350	p.D2784H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	428	0	0	1037	276	21.02	-	-	-	G	152279012	C	G	152279012	3	3	597	1	0	0	0	0	1	0	0	0	5968	855	30	2	3839	2	FLG	1	152279012	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	1347346	152279012	96971609	6	52726										
ATP8B2	0	genome.wustl.edu	37	chr1	154303324	154303324	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agacctccaagtacaatattCtcaccttcctgcctgtcaac	4	15	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	154303324	154303324	C	G	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.223	p.L75V	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	76	0	0	107	47	30.52	-	-	-	G	154303324	C	G	154303324	3	3	597	1	0	0	0	0	1	0	0	0	1199	913	32	2	237	2	ATP8B2	1	154303324	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	2024312	154303324	94947297	7	52727										
FLAD1	0	genome.wustl.edu	37	chr1	154961309	154961309	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	caggccagtgaggctgtataCaaactcgctgaatcaggtag	12	9	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	154961309	154961309	C	G	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	nonsense	c.1101	p.Y367*	0.970	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	12	0	0	10	9	47.37	-	-	-	G	154961309	C	G	154961309	4	3	597	1	0	0	0	0	0	1	0	0	5966	489	17	4	1182	4	FLAD1	1	154961309	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	657985	154961309	94289312	8	52728										
ARHGEF11	0	genome.wustl.edu	37	chr1	156915948	156915948	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccgacactgagggtggctctCagcctcctagacagcaggag	13	13	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	156915948	156915948	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.2701	p.E901K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	15	0	0	25	7	21.88	-	-	-	T	156915948	C	T	156915948	3	4	597	1	0	0	0	0	1	0	0	0	898	835	29	2	2039	2	ARHGEF11	1	156915948	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	1954639	156915948	92334673	9	52729										
RAB7L1	0	genome.wustl.edu	37	chr1	205739909	205739909	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccttgactgatgtttctgtcCaacctgtgaaaccgttctct	7	12	2	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	205739909	205739909	C	T	SNP	RAB7L1	ENST00000235932	human	ensembl	69_37n	-1	known	nonsense	c.452	p.W151*	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB7L1	HGNC	ENSG00000117280	126	0	0	134	64	32.32	-	-	-	T	205739909	C	T	205739909	4	4	597	1	0	0	0	0	0	1	0	0	13038	595	21	4	167	4	RAB7L1	1	205739909	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	48823961	205739909	43510712	10	52730										
OBSCN	0	genome.wustl.edu	37	chr1	228538601	228538601	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttgtggagggagaggacgccCagttcacctgcaccatcgaa	13	11	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	228538601	228538601	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	nonsense	c.18376	p.Q6126*	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	36	0	0	17	11	39.29	-	-	-	T	228538601	C	T	228538601	4	4	597	1	0	0	0	0	0	1	0	0	10885	595	21	4	18678	4	OBSCN	1	228538601	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	22798692	228538601	20712020	11	52731										
CCT7	0	genome.wustl.edu	37	chr2	73471840	73471840	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aaggtacagggtggagccctCgaggtaagcctgctgtggcc	16	10	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	73471840	73471840	C	T	SNP	CCT7	ENST00000258091	human	ensembl	69_37n	1	known	silent	c.615	p.L205	0.572	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624	59	0	0	68	43	38.39	-	-	-	T	73471840	C	T	73471840	2	4	597	1	0	0	0	0	0	0	0	1	2988	871	31	1		1	CCT7	2	73471840	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		73471840	169727533	12	52732										
ADRA2B	0	genome.wustl.edu	37	chr2	96781346	96781346	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atgatgaggcaaggagcaaaGaaagatccgatgctggaggc	15	6	0	4			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	96781346	96781346	G	C	SNP	ADRA2B	ENST00000409345	human	ensembl	69_37n	-1	known	missense	c.543	p.F181L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2B,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2B	HGNC	ENSG00000222040	31	0	0	31	8	20.51	-	-	-	C	96781346	G	C	96781346	3	2	597	1	0	0	0	0	1	0	0	0	338	933	33	2	804	2	ADRA2B	2	96781346	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	23309506	96781346	146418027	13	52733										
INSIG2	0	genome.wustl.edu	37	chr2	118864687	118864687	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tatacatctccagatttcctCtatgttcgttcttggttacc	5	11	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	118864687	118864687	C	G	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	silent	c.558	p.L186	0.995	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	141	0	0	137	72	34.45	-	-	-	G	118864687	C	G	118864687	2	3	597	1	0	0	0	0	0	0	0	1	7820	900	32	2		2	INSIG2	2	118864687	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	22083341	118864687	124334686	14	52734										
NEB	0	genome.wustl.edu	37	chr2	152544005	152544005	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttaatgctgagggctccaatCattttccctttgctcttttc	6	11	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	152544005	152544005	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.2565	p.M855I	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	170	0	0	296	141	32.19	-	-	-	G	152544005	C	G	152544005	3	3	597	1	0	0	0	0	1	0	0	0	10374	826	29	2	23745	2	NEB	2	152544005	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	33679318	152544005	90655368	15	52735										
UBR3	0	genome.wustl.edu	37	chr2	170863687	170863687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggaggagctgcagggacgacCgggagctttcccagtaagca	16	10	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	170863687	170863687	C	T	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.4217	p.P1406L	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	50	0	0	63	37	37	-	-	-	T	170863687	C	T	170863687	3	4	597	1	0	0	0	0	1	0	0	0	17000	652	23	1	4327	1	UBR3	2	170863687	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	18319682	170863687	72335686	16	52736										
TTN	0	genome.wustl.edu	37	chr2	179426695	179426695	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	taggacctggaggtcctggtCtgtcaaggacaattatagta	12	7	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	179426695	179426695	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.76460	p.R25487K	0.869	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	26	0	0	34	15	30.61	-	-	-	T	179426695	C	T	179426695	3	4	597	1	0	0	0	0	1	0	0	0	16832	913	32	2	23963	2	TTN	2	179426695	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	8563008	179426695	63772678	17	52737										
SSFA2	0	genome.wustl.edu	37	chr2	182794293	182794293	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cttttcttttttaaggttggCatggatcctattagctgtgt	9	6	1	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	182794293	182794293	C	A	SNP	SSFA2	ENST00000320370	human	ensembl	69_37n	1	known	silent	c.3681	p.G1227	0.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	182	1	0.55	236	129	35.34	-	-	-	A	182794293	C	A	182794293	2	1	597	1	0	0	0	0	0	0	0	1	15274	697	25	4		4	SSFA2	2	182794293	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	3367598	182794293	60405080	18	52738										
ANKAR	0	genome.wustl.edu	37	chr2	190593522	190593522	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggcacacttctcagtgtcatCagagcagtgggatccatttg	11	10	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	190593522	190593522	C	T	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	silent	c.3168	p.I1056	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	58	0	0	103	54	34.39	-	-	-	T	190593522	C	T	190593522	2	4	597	1	0	0	0	0	0	0	0	1	623	816	29	2		2	ANKAR	2	190593522	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	7799229	190593522	52605851	19	52739										
SATB2	0	genome.wustl.edu	37	chr2	200173524	200173524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctggaccacgtgttgcatgcGttcgctgtggtgatgccttg	14	10	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	200173524	200173524	G	A	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.1699	p.R567C	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	43	0	0	41	29	41.43	-	-	-	A	200173524	G	A	200173524	3	1	597	1	0	0	0	0	1	0	0	0	13941	1145	40	1	510	1	SATB2	2	200173524	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	9580002	200173524	43025849	20	52740										
ZNF142	0	genome.wustl.edu	37	chr2	219508614	219508614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctgaggccgcgttgttgcttGaagctagccccacactcggg	13	13	0	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	219508614	219508614	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	silent	c.2625	p.F875	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	46	0	0	29	8	21.62	-	-	-	A	219508614	G	A	219508614	2	1	597	1	0	0	0	0	0	0	0	1	17827	1281	45	2		2	ZNF142	2	219508614	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	19335090	219508614	23690759	21	52741										
CHRND	0	genome.wustl.edu	37	chr2	233399028	233399028	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aacttcattgttaaccacatGagggaccagaacaattacaa	6	9	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	233399028	233399028	G	A	SNP	CHRND	ENST00000258385	human	ensembl	69_37n	1	known	missense	c.1347	p.M449I	0.995	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902	55	0	0	42	27	39.13	-	-	-	A	233399028	G	A	233399028	3	1	597	1	0	0	0	0	1	0	0	0	3423	1290	45	2	1389	2	CHRND	2	233399028	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	13890414	233399028	9800345	22	52742										
TRPM8	0	genome.wustl.edu	37	chr2	234858761	234858761	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gcacggtgtcccggctgcctGaggaggagactgagagttgg	18	9	0	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	234858761	234858761	G	C	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.1111	p.E371Q	0.994	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	49	0	0	38	6	13.64	-	-	-	C	234858761	G	C	234858761	3	2	597	1	0	0	0	0	1	0	0	0	16688	1291	45	2	1141	2	TRPM8	2	234858761	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	1459733	234858761	8340612	23	52743										
IQCA1	0	genome.wustl.edu	37	chr2	237308074	237308074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	acctttgtatgcgttacatcCttccttcattgcaggaagaa	7	10	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	237308074	237308074	C	T	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	missense	c.1192	p.G398R	0.985	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	98	0	0	106	45	29.8	-	-	-	T	237308074	C	T	237308074	3	4	597	1	0	0	0	0	1	0	0	0	7856	690	24	4	1320	4	IQCA1	2	237308074	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	2449313	237308074	5891299	24	52744										
ZNF502	0	genome.wustl.edu	37	chr3	44763099	44763099	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	accagagaattcacactggaGagaaaccttataaatgcaat	7	8	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	44763099	44763099	G	A	SNP	ZNF502	ENST00000296091	human	ensembl	69_37n	1	known	missense	c.790	p.E264K	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653	42	0	0	72	10	12.2	-	-	-	A	44763099	G	A	44763099	3	1	597	1	0	0	0	0	1	0	0	0	18046	943	33	2	796	2	ZNF502	3	44763099	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		44763099	153259331	25	52745										
FOXP1	0	genome.wustl.edu	37	chr3	71026112	71026112	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cttccacgtggccgcgttgcGtcggaagtaagcaaacattc	11	12	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	71026112	71026112	G	C	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	missense	c.1510	p.R504G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	89	0	0	39	52	57.14	-	-	-	C	71026112	G	C	71026112	3	2	597	1	0	0	0	0	1	0	0	0	6074	1145	40	3	543	3	FOXP1	3	71026112	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	26263013	71026112	126996318	26	52746										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0	81	47	36.72	-	-	-	G	178952085	A	G	178952085	3	3	597	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	107925973	178952085	19070345	27	52747										
LDB2	0	genome.wustl.edu	37	chr4	16504411	16504411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cgttggccgcatcatattgcGtgttttctaatctagtgatt	9	8	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	16504411	16504411	G	A	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.977	p.T326M	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	112	0	0	45	79	63.71	-	-	-	A	16504411	G	A	16504411	3	1	597	1	0	0	0	0	1	0	0	0	8750	1145	40	1	148	1	LDB2	4	16504411	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		16504411	174649865	28	52748										
MUC7	0	genome.wustl.edu	37	chr4	71347020	71347020	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	catcttcctcagctccaccaGagaccacagctgccccaccc	5	21	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	71347020	71347020	G	A	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	missense	c.559	p.E187K	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	343	0	0	210	201	48.79	-	-	-	A	71347020	G	A	71347020	3	1	597	1	0	0	0	0	1	0	0	0	10053	943	33	2	565	2	MUC7	4	71347020	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	54842609	71347020	119807256	29	52749										
WDFY3	0	genome.wustl.edu	37	chr4	85678260	85678260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	caggaaaatgacaagcatctCggttaatctccctgaccgtc	8	12	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	85678260	85678260	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.5243	p.R1748Q	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	70	0	0	63	14	17.95	-	-	-	T	85678260	C	T	85678260	3	4	597	1	0	0	0	0	1	0	0	0	17367	884	31	1	5481	1	WDFY3	4	85678260	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	14331240	85678260	105476016	30	52750										
OTUD4	0	genome.wustl.edu	37	chr4	146067547	146067547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gttagattctcgacttgtgtGatcaaaatcctcaactcttt	6	9	4	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	146067547	146067547	G	A	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.1294	p.H432Y	0.989	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	107	0	0	24	43	64.18	-	-	-	A	146067547	G	A	146067547	3	1	597	1	0	0	0	0	1	0	0	0	11387	1290	45	2	2082	2	OTUD4	4	146067547	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	60389287	146067547	45086729	31	52751										
SH3RF1	0	genome.wustl.edu	37	chr4	170057685	170057685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tttggggcagtgctgctctgGgctgctgccgaggaacattc	15	10	1	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	170057685	170057685	G	A	SNP	SH3RF1	ENST00000511421	human	ensembl	69_37n	-1	known	missense	c.437	p.P146L	0.998	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH3RF1	HGNC	ENSG00000154447	139	0	0	77	109	58.6	-	-	-	A	170057685	G	A	170057685	3	1	597	1	0	0	0	0	1	0	0	0	14347	1219	43	4	1846	4	SH3RF1	4	170057685	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	23990138	170057685	21096591	32	52752										
FAT1	0	genome.wustl.edu	37	chr4	187541561	187541561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cgacaacgtgggccactgcaGaaggcttatgttcctctgtc	11	12	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	187541561	187541561	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6179	p.S2060F	0.915	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	66	0	0	37	42	53.16	-	-	-	A	187541561	G	A	187541561	3	1	597	1	0	0	0	0	1	0	0	0	5735	942	33	2	7659	2	FAT1	4	187541561	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	17483876	187541561	3612715	33	52753										
CDH12	0	genome.wustl.edu	37	chr5	21975470	21975470	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggtgtatttcacagtgccctCtcccttgtctaagtcggaat	9	11	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	21975470	21975470	C	T	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.256	p.E86K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	79	0	0	66	38	36.54	-	-	-	T	21975470	C	T	21975470	3	4	597	1	0	0	0	0	1	0	0	0	3127	922	32	2	2168	2	CDH12	5	21975470	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		21975470	158939790	34	52754										
IL7R	0	genome.wustl.edu	37	chr5	35857117	35857117	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aacttttggcatggttttttCtttacttcaagtcgtttctg	7	7	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	35857117	35857117	C	G	SNP	IL7R	ENST00000303115	human	ensembl	69_37n	1	known	missense	c.38	p.S13C	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685	247	0	0	446	113	20.21	-	-	-	G	35857117	C	G	35857117	3	3	597	1	0	0	0	0	1	0	0	0	7759	913	32	2	40	2	IL7R	5	35857117	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	13881647	35857117	145058143	35	52755										
SEPP1	0	genome.wustl.edu	37	chr5	42801110	42801110	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gaatctgtgggcaatttacaGagtaattgatttatacatct	8	5	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	42801110	42801110	G	C	SNP	SEPP1	ENST00000506577	human	ensembl	69_37n	-1	known	silent	c.858	p.L286	0.936	pfam_SelP_C	pfam_Selenoprotein-P_N,pfam_SelP_C	-	pseudogene	SEPP1	HGNC	ENSG00000250722	58	0	0	104	32	23.53	-	-	-	C	42801110	G	C	42801110	2	2	597	1	0	0	0	0	0	0	0	1	14145	929	33	2		2	SEPP1	5	42801110	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	6943993	42801110	138114150	36	52756										
RASGRF2	0	genome.wustl.edu	37	chr5	80382663	80382663	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttgtgtcacagagtaatgcaCgatgaagtcagcgacactga	11	8	2	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	80382663	80382663	C	T	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	silent	c.1281	p.H427	0.894	superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	75	0	0	80	48	37.5	-	-	-	T	80382663	C	T	80382663	2	4	597	1	0	0	0	0	0	0	0	1	13156	535	19	1		1	RASGRF2	5	80382663	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	37581553	80382663	100532597	37	52757										
CDKL3	0	genome.wustl.edu	37	chr5	133695701	133695701	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctcatctaatactgtgtggtCaataaattcaaataccaaat	4	8	4	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	133695701	133695701	C	T	SNP	CDKL3	ENST00000265334	human	ensembl	69_37n	-1	known	missense	c.247	p.D83N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL3	HGNC	ENSG00000006837	115	0	0	131	39	22.94	-	-	-	T	133695701	C	T	133695701	3	4	597	1	0	0	0	0	1	0	0	0	3184	826	29	2	1579	2	CDKL3	5	133695701	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	53313038	133695701	47219559	38	52758										
NR3C1	0	genome.wustl.edu	37	chr5	142780154	142780154	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccatatacagtcccattgagAgtgaaactgctttggacaga	9	9	0	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	142780154	142780154	A	C	SNP	NR3C1	ENST00000231509	human	ensembl	69_37n	-1	known	missense	c.251	p.L84R	1.000	pfam_Glcrtcd_rcpt,prints_Glcrtcd_rcpt	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580	44	0	0	54	31	36.47	-	-	-	C	142780154	A	C	142780154	3	2	597	1	0	0	0	0	1	0	0	0	10703	304	11	5	2169	5	NR3C1	5	142780154	Missense_Mutation	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	9084453	142780154	38135106	39	52759										
C1QTNF2	0	genome.wustl.edu	37	chr5	159776691	159776691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccatgcttcccgggggtaccGttgacccccttggggccacg	13	16	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	159776691	159776691	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	69_37n	-1	known	silent	c.477	p.N159	0.569	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861	25	0	0	10	18	62.07	-	-	-	A	159776691	G	A	159776691	2	1	597	1	0	0	0	0	0	0	0	1	1982	1136	40	1		1	C1QTNF2	5	159776691	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	16996537	159776691	21138569	40	52760										
RUFY1	0	genome.wustl.edu	37	chr5	179020635	179020635	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cgattaatttacagatgtttCacaaagctcaggtgggagtt	10	6	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	179020635	179020635	C	T	SNP	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	missense	c.1402	p.H468Y	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	86	0	0	88	54	38.03	-	-	-	T	179020635	C	T	179020635	3	4	597	1	0	0	0	0	1	0	0	0	13824	826	29	2	1444	2	RUFY1	5	179020635	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	19243944	179020635	1894625	41	52761										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032006	26032006	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	caagtaggcctcacaagcctCctgcagcgccatcaccgcag	9	17	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	26032006	26032006	C	A	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	nonsense	c.283	p.E95*	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	41	0	0	81	20	19.8	-	-	-	A	26032006	C	A	26032006	4	1	597	1	0	0	0	0	0	1	0	0	7207	864	30	2	131	2	HIST1H3B	6	26032006	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		26032006	145083061	42	52762										
TNXB	0	genome.wustl.edu	37	chr6	32065667	32065667	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aggatctctagacggaccctCagggcctgtacctctgaagc	11	13	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	32065667	32065667	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.309	p.L103	0.999	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	33	0	0	32	7	17.95	-	-	-	T	32065667	C	T	32065667	2	4	597	1	0	0	0	0	0	0	0	1	16441	813	29	2		2	TNXB	6	32065667	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	6033661	32065667	139049400	43	52763										
KIF6	0	genome.wustl.edu	37	chr6	39507966	39507966	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agagcctcctgagctttcttCttttctttttttaacatgtt	5	9	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	39507966	39507966	C	G	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.1458	p.K486N	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	71	0	0	72	22	23.4	-	-	-	G	39507966	C	G	39507966	3	3	597	1	0	0	0	0	1	0	0	0	8360	912	32	2	1030	2	KIF6	6	39507966	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	7442299	39507966	131607101	44	52764										
SLC35B2	0	genome.wustl.edu	37	chr6	44222443	44222443	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccctcaggccctttccacccTcaaaccttctgcacaggaga	6	18	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	44222443	44222443	T	C	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	nonstop	c.1299	p.*433W	0.888	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	60	0	0	58	30	34.09	-	-	-	C	44222443	T	C	44222443	4	2	597	1	0	0	0	0	0	0	0	0	14665	1564	54	5	3	5	SLC35B2	6	44222443	Nonstop_Mutation	SNP	T	TCGA-BH-A1F8-01A-11D-A13L-09	4714477	44222443	126892624	45	52765										
LAMA2	0	genome.wustl.edu	37	chr6	129835646	129835646	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atcaaacaccgcattgagctCacagtcgatgggaaccaggt	10	11	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	129835646	129835646	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	silent	c.9117	p.L3039	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	39	0	0	61	36	37.11	-	-	-	T	129835646	C	T	129835646	2	4	597	1	0	0	0	0	0	0	0	1	8660	813	29	2		2	LAMA2	6	129835646	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	85613203	129835646	41279421	46	52766										
POLM	0	genome.wustl.edu	37	chr7	44118410	44118410	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cactccatgctccagcagctCctgggggagggaacaaagca	12	13	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	44118410	44118410	C	A	SNP	POLM	ENST00000242248	human	ensembl	69_37n	-1	known	nonsense	c.643	p.E215*	1.000	superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,prints_DNA_pol_X_beta-like	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678	72	0	0	21	40	65.57	-	-	-	A	44118410	C	A	44118410	4	1	597	1	0	0	0	0	0	1	0	0	12280	869	30	2	869	2	POLM	7	44118410	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		44118410	115020253	47	52767										
COL1A2	0	genome.wustl.edu	37	chr7	94053669	94053669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gacctcctggcactccaggtCctcagggtcttcttggtgct	11	14	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	94053669	94053669	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.2587	p.P863S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	113	0	0	166	74	30.83	-	-	-	T	94053669	C	T	94053669	3	4	597	1	0	0	0	0	1	0	0	0	3708	855	30	2	2749	2	COL1A2	7	94053669	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	49935259	94053669	65084994	48	52768										
PKHD1L1	0	genome.wustl.edu	37	chr8	110487470	110487470	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggatcacataaccaacatttCatatacatcgacattctatg	4	10	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	8	110487470	110487470	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.8729	p.S2910L	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	77	0	0	99	40	28.78	-	-	-	T	110487470	C	T	110487470	3	4	597	1	0	0	0	0	1	0	0	0	12046	838	29	2	8931	2	PKHD1L1	8	110487470	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		110487470	35876552	49	52769										
ZHX2	0	genome.wustl.edu	37	chr8	123965814	123965814	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttgctgaaaacgggaaccgtGaagtggatggagcagtacca	14	7	0	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	8	123965814	123965814	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	silent	c.2064	p.V688	0.001	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	49	0	0	60	51	45.95	-	-	-	A	123965814	G	A	123965814	2	1	597	1	0	0	0	0	0	0	0	1	17772	1277	45	2		2	ZHX2	8	123965814	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	13478344	123965814	22398208	50	52770										
PTPRD	0	genome.wustl.edu	37	chr9	8465571	8465571	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tgcttgtcatcccccagggtGaactcagtgggaaggacatc	12	11	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	8465571	8465571	G	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.3609	p.F1203L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	105	0	0	48	58	54.72	-	-	-	T	8465571	G	T	8465571	3	4	597	1	0	0	0	0	1	0	0	0	12882	1281	45	2	2254	2	PTPRD	9	8465571	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		8465571	132747860	51	52771										
TAF1L	0	genome.wustl.edu	37	chr9	32632676	32632676	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atctgccaccccagtcacctCtaggagacacttgcccttca	6	17	4	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	32632676	32632676	C	G	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.2902	p.E968Q	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	102	0	0	168	20	10.64	-	-	-	G	32632676	C	G	32632676	3	3	597	1	0	0	0	0	1	0	0	0	15615	922	32	2	2582	2	TAF1L	9	32632676	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	24167105	32632676	108580755	52	52772										
PRUNE2	0	genome.wustl.edu	37	chr9	79465476	79465476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccggaatatgtggaatgattCggaaatatttagctcttcta	9	6	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	79465476	79465476	C	T	SNP	PRUNE2	ENST00000376718	human	ensembl	69_37n	-1	novel	missense	c.247	p.E83K	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	95	0	0	96	37	27.82	-	-	-	T	79465476	C	T	79465476	3	4	597	1	0	0	0	0	1	0	0	0	12721	893	31	1	9087	1	PRUNE2	9	79465476	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	46832800	79465476	61747955	53	52773										
HIATL1	0	genome.wustl.edu	37	chr9	97209196	97209197	+	Frame_Shift_Ins	INS	-	-	T													0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gaagctggacagtattcaagINStttttttctctatctcaggc							TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	97209196	97209197	-	T	INS	HIATL1	ENST00000375344	human	ensembl	69_37n	1	known	frame_shift_ins	c.821_822	p.L277fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIATL1	HGNC	ENSG00000148110	123	0	0	78	74	48.68	-	-	-	T	97209197	-	T	97209196	7	5	597	1	0	1	1	0	0	0	0	0	7149	1029	36	0	847	0	HIATL1	9	97209196	Frame_Shift_Ins	INS	-	TCGA-BH-A1F8-01A-11D-A13L-09	17743720	97209196	44004235	54	52774										
ANGPTL2	0	genome.wustl.edu	37	chr9	129851266	129851266	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atcatcatcaccactttcttGagtgagtaagagcctcctcg	7	12	4	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	129851266	129851266	G	C	SNP	ANGPTL2	ENST00000373425	human	ensembl	69_37n	-1	known	silent	c.1434	p.L478	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL2	HGNC	ENSG00000136859	77	0	0	34	7	17.07	-	-	-	C	129851266	G	C	129851266	2	2	597	1	0	0	0	0	0	0	0	1	614	1277	45	2		2	ANGPTL2	9	129851266	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	32642070	129851266	11362165	55	52775										
SEC16A	0	genome.wustl.edu	37	chr9	139357443	139357443	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gaggaaagagagctgggcctCaccagactcctcctcttcca	10	14	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	139357443	139357443	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.4789	p.E1597K	0.994	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	20	0	0	19	11	36.67	-	-	-	T	139357443	C	T	139357443	3	4	597	1	0	0	0	0	1	0	0	0	14074	835	29	2	2368	2	SEC16A	9	139357443	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	9506177	139357443	1855988	56	52776										
CCAR1	0	genome.wustl.edu	37	chr10	70482304	70482304	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agaatccgccatgggctactCagtttacagccactgcagta	9	12	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	70482304	70482304	C	T	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	nonsense	c.43	p.Q15*	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	118	0	0	44	59	57.28	-	-	-	T	70482304	C	T	70482304	4	4	597	1	0	0	0	0	0	1	0	0	2755	827	29	2	45	2	CCAR1	10	70482304	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		70482304	65052443	57	52777										
PTEN	0	genome.wustl.edu	37	chr10	89653845	89653845	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	acttgaaggcgtatacaggaAcaatattgatgatgtagtaa	10	4	0	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	89653845	89653845	A	T	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.143	p.N48I	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	94	0	0	47	79	62.7	-	-	-	T	89653845	A	T	89653845	3	4	597	1	0	0	0	0	1	0	0	0	12818	43	2	5	149	5	PTEN	10	89653845	Missense_Mutation	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	19171541	89653845	45880902	58	52778										
TIAL1	0	genome.wustl.edu	37	chr10	121337005	121337005	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctgggaaaactcttatttccAtaatttgtccaaatggtgag	8	7	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	121337005	121337005	A	C	SNP	TIAL1	ENST00000369093	human	ensembl	69_37n	-1	known	missense	c.746	p.M249R	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923	52	0	0	35	50	58.82	-	-	-	C	121337005	A	C	121337005	3	2	597	1	0	0	0	0	1	0	0	0	15984	217	8	5	448	5	TIAL1	10	121337005	Missense_Mutation	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	31683160	121337005	14197742	59	52779										
SCGB1C1	0	genome.wustl.edu	37	chr11	193718	193718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cgctcgtgatgcagggatggCcacaggggaggacaacgatg	17	9	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	193718	193718	C	T	SNP	SCGB1C1	ENST00000342878	human	ensembl	69_37n	1	known	missense	c.62	p.A21V	0.146	pfam_Uteroglobin-like_superfam	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB1C1	HGNC	ENSG00000188076	49	0	0	27	9	25	-	-	-	T	193718	C	T	193718	3	4	597	1	0	0	0	0	1	0	0	0	13982	739	26	4	68	4	SCGB1C1	11	193718	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		193718	134812798	60	52780										
RNH1	0	genome.wustl.edu	37	chr11	499131	499131	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttgaagtccggcttggccctGagcacggaggccaggggctc	16	12	0	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	499131	499131	G	C	SNP	RNH1	ENST00000529115	human	ensembl	69_37n	-1	known	nonsense	c.422	p.S141*	0.995	NULL	NULL	-	no_errors	RNH1	HGNC	ENSG00000023191	16	0	0	15	9	37.5	-	-	-	C	499131	G	C	499131	4	2	597	1	0	0	0	0	0	1	0	0	13590	1277	45	2	911	2	RNH1	11	499131	Nonsense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	305413	499131	134507385	61	52781										
MUC5B	0	genome.wustl.edu	37	chr11	1254384	1254384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggacggctgcacctgccccgCgggcaccttcctcaatgacg	12	17	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	1254384	1254384	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.2216	p.A739V	0.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	22	0	0	14	7	33.33	-	-	-	T	1254384	C	T	1254384	3	4	597	1	0	0	0	0	1	0	0	0	10051	768	27	1	2286	1	MUC5B	11	1254384	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	755253	1254384	133752132	62	52782										
BRSK2	0	genome.wustl.edu	37	chr11	1466828	1466828	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	caggagaagatgatttacttCctcctcctggaccggaaaga	10	10	0	4			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	1466828	1466828	C	T	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	silent	c.1143	p.F381	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	15	0	0	15	5	25	-	-	-	T	1466828	C	T	1466828	2	4	597	1	0	0	0	0	0	0	0	1	1532	854	30	2		2	BRSK2	11	1466828	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	212444	1466828	133539688	63	52783										
ABCC8	0	genome.wustl.edu	37	chr11	17470166	17470166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tctgtccagcagtcatttctCccatggacaggttggaggtg	12	10	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	17470166	17470166	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.1229	p.G410E	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	92	0	0	104	59	36.2	-	-	-	T	17470166	C	T	17470166	3	4	597	1	0	0	0	0	1	0	0	0	58	855	30	2	3644	2	ABCC8	11	17470166	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	16003338	17470166	117536350	64	52784										
KCNA4	0	genome.wustl.edu	37	chr11	30032528	30032528	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttttcagtctctctgtggtaGaaatagttaaagttagagac	9	5	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	30032528	30032528	G	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.1698	p.F566L	1.000	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	45	0	0	79	19	19.39	-	-	-	T	30032528	G	T	30032528	3	4	597	1	0	0	0	0	1	0	0	0	8059	933	33	2	267	2	KCNA4	11	30032528	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	12562362	30032528	104973988	65	52785										
PPME1	0	genome.wustl.edu	37	chr11	73882561	73882561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tcagagcggagccaagatgcGaatggggtacgtgacccata	14	9	1	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	73882561	73882561	G	C	SNP	PPME1	ENST00000328257	human	ensembl	69_37n	1	known	missense	c.95	p.R32P	1.000	pirsf_PPase_methylesterase_euk	pirsf_PPase_methylesterase_euk	-	no_errors	PPME1	HGNC	ENSG00000214517	14	0	0	5	9	64.29	-	-	-	C	73882561	G	C	73882561	3	2	597	1	0	0	0	0	1	0	0	0	12424	1058	37	3	97	3	PPME1	11	73882561	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	43850033	73882561	61123955	66	52786										
MYO7A	0	genome.wustl.edu	37	chr11	76893573	76893573	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agtgagaagatccctgtgatGaccaagatttatgagaccct	10	8	0	6			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	76893573	76893573	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.3213	p.M1071I	1.000	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	33	0	0	125	14	10.07	-	-	-	A	76893573	G	A	76893573	3	1	597	1	0	0	0	0	1	0	0	0	10154	1290	45	2	3307	2	MYO7A	11	76893573	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	3011012	76893573	58112943	67	52787										
TBCEL	0	genome.wustl.edu	37	chr11	120929104	120929104	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	taaattcatttcccaaactgGaagaagtgagattgttagga	9	5	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	120929104	120929104	G	C	SNP	TBCEL	ENST00000422003	human	ensembl	69_37n	1	known	missense	c.763	p.E255Q	1.000	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114	74	0	0	96	46	32.39	-	-	-	C	120929104	G	C	120929104	3	2	597	1	0	0	0	0	1	0	0	0	15730	1175	41	2	781	2	TBCEL	11	120929104	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	44035531	120929104	14077412	68	52788										
SLC6A12	0	genome.wustl.edu	37	chr12	313734	313734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gggggaggatacataccctgGaagagggggcagatcttcct	16	8	1	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	313734	313734	G	A	SNP	SLC6A12	ENST00000535347	human	ensembl	69_37n	-1	putative	missense	c.227	p.S76F	0.999	NULL	NULL	-	no_stop_codon	SLC6A12	HGNC	ENSG00000111181	21	0	0	20	10	33.33	-	-	-	A	313734	G	A	313734	3	1	597	1	0	0	0	0	1	0	0	0	14764	1165	41	2	1551	2	SLC6A12	12	313734	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		313734	133538161	69	52789										
EFCAB4B	0	genome.wustl.edu	37	chr12	3757680	3757680	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aggcttctgggaggtgctctCagcacaggccagtgcccacc	13	14	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	3757680	3757680	C	G	SNP	EFCAB4B	ENST00000333750	human	ensembl	69_37n	-1	known	nonstop	c.554	p.*185S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EFCAB4B	HGNC	ENSG00000130038	20	0	0	13	6	31.58	-	-	-	G	3757680	C	G	3757680	4	3	597	1	0	0	0	0	0	0	0	0	4972	813	29	2	1281	2	EFCAB4B	12	3757680	Nonstop_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	3443946	3757680	130094215	70	52790										
C12orf36	0	genome.wustl.edu	37	chr12	13526234	13526234	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aaagccgtctgtccactcttCagcctctgaatcctccaagc	6	16	4	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	13526234	13526234	C	T	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	0.000	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	115	0	0	149	103	40.87	-	-	-	T	13526234	C	T	13526234	2	4	597	1	0	0	0	0	0	0	0	1	1695	813	29	2		2	C12orf36	12	13526234	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	9768554	13526234	120325661	71	52791										
FGD4	0	genome.wustl.edu	37	chr12	32793219	32793219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cttttctttaggacgtcagaGcccaggccaccattccactt	7	14	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	32793219	32793219	G	A	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	missense	c.2053	p.A685T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	36	0	0	36	32	46.38	-	-	-	A	32793219	G	A	32793219	3	1	597	1	0	0	0	0	1	0	0	0	5881	971	34	4	2111	4	FGD4	12	32793219	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	19266985	32793219	101058676	72	52792										
ERBB3	0	genome.wustl.edu	37	chr12	56489535	56489535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cggcacttttctctactggcGtgggcgccggattcagaata	12	11	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	56489535	56489535	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.2000	p.R667L	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	104	0	0	107	50	31.85	-	-	-	T	56489535	G	T	56489535	3	4	597	1	0	0	0	0	1	0	0	0	5245	1145	40	3	2197	3	ERBB3	12	56489535	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	23696316	56489535	77362360	73	52793										
DYRK2	0	genome.wustl.edu	37	chr12	68051050	68051050	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggcaaaacgggcttgccagtGgtgccagagcggcagctgga	17	10	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	68051050	68051050	G	A	SNP	DYRK2	ENST00000344096	human	ensembl	69_37n	1	known	silent	c.363	p.V121	0.056	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334	44	0	0	64	18	21.95	-	-	-	A	68051050	G	A	68051050	2	1	597	1	0	0	0	0	0	0	0	1	4891	1335	47	4		4	DYRK2	12	68051050	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	11561515	68051050	65800845	74	52794										
TMTC2	0	genome.wustl.edu	37	chr12	83359365	83359365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atttaaataccggtattattCtaatgaaccaaggaaggacg	8	6	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	83359365	83359365	C	G	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	missense	c.1711	p.L571V	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	59	0	0	93	12	11.43	-	-	-	G	83359365	C	G	83359365	3	3	597	1	0	0	0	0	1	0	0	0	16356	912	32	2	1733	2	TMTC2	12	83359365	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	15308315	83359365	50492530	75	52795										
STAB2	0	genome.wustl.edu	37	chr12	104140458	104140458	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gtgagtgtaacctggattatGaaggtgacggaatcacatgc	13	6	1	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	104140458	104140458	G	T	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	nonsense	c.6220	p.E2074*	0.926	smart_EGF-like	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	54	0	0	104	60	36.59	-	-	-	T	104140458	G	T	104140458	4	4	597	1	0	0	0	0	0	1	0	0	15329	1291	45	2	6450	2	STAB2	12	104140458	Nonsense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	20781093	104140458	29711437	76	52796										
CCDC60	0	genome.wustl.edu	37	chr12	119942952	119942952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gctccacactcagtctgagtCgggccagtggggggtcctct	14	13	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	119942952	119942952	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	missense	c.727	p.R243W	0.821	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	24	0	0	16	13	44.83	-	-	-	T	119942952	C	T	119942952	3	4	597	1	0	0	0	0	1	0	0	0	2858	875	31	1	753	1	CCDC60	12	119942952	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	15802494	119942952	13908943	77	52797										
HIP1R	0	genome.wustl.edu	37	chr12	123333101	123333101	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctgcccagcagctccattctCagctggaagttctgccacgt	9	15	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	123333101	123333101	C	G	SNP	HIP1R	ENST00000253083	human	ensembl	69_37n	1	known	silent	c.246	p.L82	1.000	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1R	HGNC	ENSG00000130787	37	0	0	56	9	13.85	-	-	-	G	123333101	C	G	123333101	2	3	597	1	0	0	0	0	0	0	0	1	7166	813	29	2		2	HIP1R	12	123333101	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	3390149	123333101	10518794	78	52798										
GPR12	0	genome.wustl.edu	37	chr13	27333626	27333626	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atgaggccgatcgtgaccagCttggtggcttctgactgaag	14	9	1	4			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	27333626	27333626	C	T	SNP	GPR12	ENST00000381436	human	ensembl	69_37n	-1	known	silent	c.339	p.K113	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975	34	0	0	16	27	62.79	-	-	-	T	27333626	C	T	27333626	2	4	597	1	0	0	0	0	0	0	0	1	6685	796	28	4		4	GPR12	13	27333626	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		27333626	87836252	79	52799										
KIAA1704	0	genome.wustl.edu	37	chr13	45563856	45563856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cccgcggaacagcggaggacGaagagcgggacccgagccct	16	14	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	45563856	45563856	G	A	SNP	KIAA1704	ENST00000361121	human	ensembl	69_37n	1	known	missense	c.67	p.E23K	1.000	NULL	pfam_DUF3752	-	no_errors	KIAA1704	HGNC	ENSG00000133114	15	0	0	3	5	62.5	-	-	-	A	45563856	G	A	45563856	3	1	597	1	0	0	0	0	1	0	0	0	8304	1059	37	1	69	1	KIAA1704	13	45563856	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	18230230	45563856	69606022	80	52800										
LPAR6	0	genome.wustl.edu	37	chr13	48985612	48985612	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tctgcaccatgaacttcagaGaatctgaagtcacttctcct	6	12	5	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	48985612	48985612	G	A	SNP	LPAR6	ENST00000345941	human	ensembl	69_37n	-1	known	silent	c.948	p.F316	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y5_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	LPAR6	HGNC	ENSG00000139679	40	0	0	43	12	21.43	-	-	-	A	48985612	G	A	48985612	2	1	597	1	0	0	0	0	0	0	0	1	8975	933	33	2		2	LPAR6	13	48985612	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	3421756	48985612	66184266	81	52801										
DIS3	0	genome.wustl.edu	37	chr13	73351596	73351596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agcaagacgatctatgagttCggggttagcagttaggctct	13	7	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	73351596	73351596	C	T	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	missense	c.616	p.E206K	1.000	NULL	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	131	0	0	262	45	14.66	-	-	-	T	73351596	C	T	73351596	3	4	597	1	0	0	0	0	1	0	0	0	4571	893	31	1	2332	1	DIS3	13	73351596	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	24365984	73351596	41818282	82	52802										
SIX1	0	genome.wustl.edu	37	chr14	61115628	61115628	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gccgcgcagcttctcggcctCcacgtaatgcgccttcagcc	10	18	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	14	61115628	61115628	C	A	SNP	SIX1	ENST00000247182	human	ensembl	69_37n	-1	known	nonsense	c.280	p.E94*	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX1	HGNC	ENSG00000126778	24	0	0	12	21	63.64	-	-	-	A	61115628	C	A	61115628	4	1	597	1	0	0	0	0	0	1	0	0	14435	864	30	2	582	2	SIX1	14	61115628	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		61115628	46233912	83	52803										
CLMN	0	genome.wustl.edu	37	chr14	95669924	95669924	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atcctcgtcaggttttgtctCatgaggtgaaggaactttgt	11	7	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	14	95669924	95669924	C	T	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	missense	c.1762	p.E588K	0.004	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	110	1	0.9	57	50	46.3	-	-	-	T	95669924	C	T	95669924	3	4	597	1	0	0	0	0	1	0	0	0	3572	835	29	2	1266	2	CLMN	14	95669924	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	34554296	95669924	11679616	84	52804										
CAPN3	0	genome.wustl.edu	37	chr15	42652049	42652049	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tggctccaaggacagcggctGagccccggtccccagggcca	14	16	0	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	42652049	42652049	G	A	SNP	CAPN3	ENST00000397163	human	ensembl	69_37n	1	known	missense	c.46	p.E16K	0.997	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN3	HGNC	ENSG00000092529	67	0	0	39	21	35	-	-	-	A	42652049	G	A	42652049	3	1	597	1	0	0	0	0	1	0	0	0	2653	1291	45	2	100	2	CAPN3	15	42652049	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		42652049	59879343	85	52805										
MYO5C	0	genome.wustl.edu	37	chr15	52529738	52529738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gtaatttcgcctgtgagtggCtgctttttctagttctgctt	10	8	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	52529738	52529738	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	missense	c.2809	p.A937T	0.050	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	243	0	0	319	203	38.74	-	-	-	T	52529738	C	T	52529738	3	4	597	1	0	0	0	0	1	0	0	0	10152	797	28	4	2499	4	MYO5C	15	52529738	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	9877689	52529738	50001654	86	52806										
UNC13C	0	genome.wustl.edu	37	chr15	54586231	54586231	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	attgtagaagtgaggaccttGagtggagaaatggatgtctg	15	3	1	4			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	54586231	54586231	G	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.3957	p.L1319F	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	117	0	0	148	79	34.8	-	-	-	C	54586231	G	C	54586231	3	2	597	1	0	0	0	0	1	0	0	0	17083	1281	45	2	3991	2	UNC13C	15	54586231	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	2056493	54586231	47945161	87	52807										
TLE3	0	genome.wustl.edu	37	chr15	70347638	70347638	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tcacatggaatgagtacgctCtgaaaaggtgagaaaccgtc	11	8	2	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	70347638	70347638	C	G	SNP	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	splice_site	c.1338-1	e15-1	1.000	-	-	-	no_errors	TLE3	HGNC	ENSG00000140332	26	0	0	24	9	27.27	-	-	-	G	70347638	C	G	70347638	5	3	597	1	0	0	0	0	0	0	1	0	16035	927	32	2	1005	2	TLE3	15	70347638	Splice_Site	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	15761407	70347638	32183754	88	52808										
MORF4L1	0	genome.wustl.edu	37	chr15	79179664	79179664	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tgccccaggaaagaagacatCtggtctgcaacagaaaaatg	10	9	2	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	79179664	79179664	C	G	SNP	MORF4L1	ENST00000331268	human	ensembl	69_37n	1	known	missense	c.413	p.S138C	0.992	pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	-	no_errors	MORF4L1	HGNC	ENSG00000185787	47	0	0	64	31	32.63	-	-	-	G	79179664	C	G	79179664	3	3	597	1	0	0	0	0	1	0	0	0	9778	913	32	2	435	2	MORF4L1	15	79179664	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	8832026	79179664	23351728	89	52809										
HS3ST4	0	genome.wustl.edu	37	chr16	26147270	26147270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agatcctctttgtcagtggtGagcgactcattgtggacccc	11	11	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	26147270	26147270	G	A	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	missense	c.1072	p.E358K	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	38	0	0	66	8	10.81	-	-	-	A	26147270	G	A	26147270	3	1	597	1	0	0	0	0	1	0	0	0	7418	1291	45	2	1078	2	HS3ST4	16	26147270	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		26147270	64207483	90	52810										
CLN3	0	genome.wustl.edu	37	chr16	28498999	28498999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agacctgtagggcagcaggtGaaggccaagaggagccaaca	15	9	0	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	28498999	28498999	G	A	SNP	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	missense	c.358	p.H120Y	1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	49	0	0	60	28	31.82	-	-	-	A	28498999	G	A	28498999	3	1	597	1	0	0	0	0	1	0	0	0	3573	1290	45	2	1002	2	CLN3	16	28498999	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	2351729	28498999	61855754	91	52811										
ADCY7	0	genome.wustl.edu	37	chr16	50326656	50326656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tccacaagcaccaaatgcagGatgcatcccgggacctcttc	8	15	1	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	50326656	50326656	G	C	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.607	p.D203H	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	32	0	0	37	21	36.21	-	-	-	C	50326656	G	C	50326656	3	2	597	1	0	0	0	0	1	0	0	0	299	1174	41	2	621	2	ADCY7	16	50326656	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	21827657	50326656	40028097	92	52812										
TEPP	0	genome.wustl.edu	37	chr16	58018668	58018668	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atcgaggactggtcccacttCgtgtcctcggccggggagtt	14	12	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	58018668	58018668	C	T	SNP	TEPP	ENST00000290871	human	ensembl	69_37n	1	known	silent	c.579	p.F193	0.032	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648	25	0	0	15	8	34.78	-	-	-	T	58018668	C	T	58018668	2	4	597	1	0	0	0	0	0	0	0	1	15855	883	31	1		1	TEPP	16	58018668	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	7692012	58018668	32336085	93	52813										
HYDIN	0	genome.wustl.edu	37	chr16	71098725	71098725	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	acctctgtattgaccaggtgGagggcaggtacaacacacct	11	11	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	71098725	71098725	G	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.2094	p.L698	0.101	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	56	0	0	30	39	56.52	-	-	-	C	71098725	G	C	71098725	2	2	597	1	0	0	0	0	0	0	0	1	7521	1161	41	2		2	HYDIN	16	71098725	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	13080057	71098725	19256028	94	52814										
PMFBP1	0	genome.wustl.edu	37	chr16	72159902	72159902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tgtcaggtcatcctggcaggCggctgacttccgggataatg	14	10	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	72159902	72159902	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.2233	p.A745T	0.000	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	90	0	0	55	35	32.11	-	-	-	T	72159902	C	T	72159902	3	4	597	1	0	0	0	0	1	0	0	0	12208	768	27	1	893	1	PMFBP1	16	72159902	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	1061177	72159902	18194851	95	52815										
ABR	0	genome.wustl.edu	37	chr17	1012303	1012303	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cctatcgcctcctcttcctcCtccatggcagccggagcccg	8	20	1	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	1012303	1012303	C	T	SNP	ABR	ENST00000291107	human	ensembl	69_37n	-1	known	silent	c.6	p.E2	0.987	NULL	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	17	0	0	9	4	30.77	-	-	-	T	1012303	C	T	1012303	2	4	597	1	0	0	0	0	0	0	0	1	99	680	24	4		4	ABR	17	1012303	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		1012303	80182907	96	52816										
CYB5D2	0	genome.wustl.edu	37	chr17	4060161	4060161	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tctttccgtctatccttagtGgaggtgtgagcagagactgg	13	8	2	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	4060161	4060161	G	T	SNP	CYB5D2	ENST00000301391	human	ensembl	69_37n	1	known	nonsense	c.580	p.G194*	1.000	NULL	pfam_Cyt_B5,superfamily_Cyt_B5	-	no_errors	CYB5D2	HGNC	ENSG00000167740	34	0	0	30	10	25	-	-	-	T	4060161	G	T	4060161	4	4	597	1	0	0	0	0	0	1	0	0	4156	1362	47	4	594	4	CYB5D2	17	4060161	Nonsense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	3047858	4060161	77135049	97	52817										
CCDC42	0	genome.wustl.edu	37	chr17	8638833	8638833	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cagccgggccttggcgcgctCaatcttctcctggccttcct	10	17	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	8638833	8638833	C	A	SNP	CCDC42	ENST00000293845	human	ensembl	69_37n	-1	known	nonsense	c.589	p.E197*	0.923	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973	43	0	0	27	21	43.75	-	-	-	A	8638833	C	A	8638833	4	1	597	1	0	0	0	0	0	1	0	0	2840	835	29	2	373	2	CCDC42	17	8638833	Nonsense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	4578672	8638833	72556377	98	52818										
STX8	0	genome.wustl.edu	37	chr17	9408460	9408460	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gggtgctcctcgcttagcctCttcactcatcaggctggacc	10	15	4	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	9408460	9408460	C	G	SNP	STX8	ENST00000306357	human	ensembl	69_37n	-1	known	missense	c.343	p.E115Q	0.831	NULL	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX8	HGNC	ENSG00000170310	61	0	0	32	36	52.94	-	-	-	G	9408460	C	G	9408460	3	3	597	1	0	0	0	0	1	0	0	0	15442	922	32	2	383	2	STX8	17	9408460	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	769627	9408460	71786750	99	52819										
VTN	0	genome.wustl.edu	37	chr17	26697169	26697169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	actcccctgtaccttggtcaGccagagcaacccatgccagc	8	17	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	26697169	26697169	G	T	SNP	VTN	ENST00000226218	human	ensembl	69_37n	-1	known	missense	c.56	p.A19D	0.998	prints_Somatomedin_B_chordata	pfam_Hemopexin/matrixin_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000255604	111	0	0	66	41	38.32	-	-	-	T	26697169	G	T	26697169	3	4	597	1	0	0	0	0	1	0	0	0	17334	971	34	4	1412	4	VTN	17	26697169	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	17288709	26697169	54498041	100	52820										
AP2B1	0	genome.wustl.edu	37	chr17	34044241	34044241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttccagcaagttgcaaaacaAcaatgtttatactattgcca	5	9	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	34044241	34044241	A	G	SNP	AP2B1	ENST00000312678	human	ensembl	69_37n	1	known	missense	c.2654	p.N885S	1.000	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP2B1	HGNC	ENSG00000006125	90	0	0	92	59	39.07	-	-	-	G	34044241	A	G	34044241	3	3	597	1	0	0	0	0	1	0	0	0	742	43	2	5	2732	5	AP2B1	17	34044241	Missense_Mutation	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	7347072	34044241	47150969	101	52821										
PTRF	0	genome.wustl.edu	37	chr17	40556818	40556818	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gtcgccggcctccccgcgctCcgcgccgccctcgtcgtcgt	12	22	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	40556818	40556818	C	G	SNP	PTRF	ENST00000357037	human	ensembl	69_37n	-1	known	missense	c.1060	p.E354Q	0.993	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469	13	0	0	6	4	40	-	-	-	G	40556818	C	G	40556818	3	3	597	1	0	0	0	0	1	0	0	0	12898	864	30	2	116	2	PTRF	17	40556818	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	6512577	40556818	40638392	102	52822										
AOC2	0	genome.wustl.edu	37	chr17	40997999	40997999	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tatggtggtttggccagctcAgcccttgtggtcaggtctgt	14	9	3	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	40997999	40997999	A	T	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	silent	c.1356	p.S452	0.064	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	113	0	0	116	61	34.46	-	-	-	T	40997999	A	T	40997999	2	4	597	1	0	0	0	0	0	0	0	1	728	175	7	5		5	AOC2	17	40997999	Silent	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09	441181	40997999	40197211	103	52823										
G6PC	0	genome.wustl.edu	37	chr17	41053005	41053005	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tcttggtgtccgtgatcgcaGacctcaggaatgccttctac	10	12	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	41053005	41053005	G	A	SNP	G6PC	ENST00000253801	human	ensembl	69_37n	1	known	missense	c.112	p.D38N	1.000	superfamily_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC	HGNC	ENSG00000131482	67	0	0	76	55	41.67	-	-	-	A	41053005	G	A	41053005	3	1	597	1	0	0	0	0	1	0	0	0	6192	942	33	2	114	2	G6PC	17	41053005	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	55006	41053005	40142205	104	52824										
TMC8	0	genome.wustl.edu	37	chr17	76133392	76133392	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ccatactgtgcattggcagaGacaagagcagctgtgagtcc	12	10	0	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	76133392	76133392	G	A	SNP	TMC8	ENST00000318430	human	ensembl	69_37n	1	known	missense	c.1204	p.D402N	0.880	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895	64	0	0	121	16	11.59	-	-	-	A	76133392	G	A	76133392	3	1	597	1	0	0	0	0	1	0	0	0	16086	942	33	2	1238	2	TMC8	17	76133392	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	35080387	76133392	5061818	105	52825										
ADNP2	0	genome.wustl.edu	37	chr18	77895655	77895655	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atgatatcaaaggtctttcaGagcacagcaggaataggcac	10	8	3	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	18	77895655	77895655	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	missense	c.2359	p.E787K	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	49	0	0	36	22	37.93	-	-	-	A	77895655	G	A	77895655	3	1	597	1	0	0	0	0	1	0	0	0	324	943	33	2	2369	2	ADNP2	18	77895655	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		77895655	181593	106	52826										
NFIC	0	genome.wustl.edu	37	chr19	3456562	3456562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ctgcagcctactctccgcccGacacgtcccctgcaaaccgt	7	20	1	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	3456562	3456562	G	A	SNP	NFIC	ENST00000443272	human	ensembl	69_37n	1	known	missense	c.1438	p.D480N	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIC	HGNC	ENSG00000141905	62	0	0	36	4	10	-	-	-	A	3456562	G	A	3456562	3	1	597	1	0	0	0	0	1	0	0	0	10444	1058	37	1	1483	1	NFIC	19	3456562	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		3456562	55672421	107	52827										
EEF2	0	genome.wustl.edu	37	chr19	3980544	3980544	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ttcaggtagaggtcctccttCttcccaggggtatagttggg	13	9	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	3980544	3980544	C	T	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	silent	c.1314	p.K438	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	40	0	0	46	7	13.21	-	-	-	T	3980544	C	T	3980544	2	4	597	1	0	0	0	0	0	0	0	1	4964	912	32	2		2	EEF2	19	3980544	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	523982	3980544	55148439	108	52828										
CHAF1A	0	genome.wustl.edu	37	chr19	4442293	4442293	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	cagacacggaggaggaggaaGaggaggagggcgactgtatg	20	5	0	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	4442293	4442293	G	A	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	missense	c.2725	p.E909K	1.000	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	72	0	0	67	9	11.84	-	-	-	A	4442293	G	A	4442293	3	1	597	1	0	0	0	0	1	0	0	0	3340	943	33	2	2779	2	CHAF1A	19	4442293	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	461749	4442293	54686690	109	52829										
MUC16	0	genome.wustl.edu	37	chr19	9059785	9059785	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	attggtcatctccagtttctCtgtatctgtagtgacttcag	8	9	5	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	9059785	9059785	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.27661	p.E9221K	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	116	0	0	83	94	53.11	-	-	-	T	9059785	C	T	9059785	3	4	597	1	0	0	0	0	1	0	0	0	10045	922	32	2	16190	2	MUC16	19	9059785	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	4617492	9059785	50069198	110	52830										
DMKN	0	genome.wustl.edu	37	chr19	36003351	36003351	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tctggttgctggctctcactGaaccatagccaggctgggcc	12	13	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	36003351	36003351	G	A	SNP	DMKN	ENST00000339686	human	ensembl	69_37n	-1	known	missense	c.656	p.S219L	0.006	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249	73	0	0	35	19	35.19	-	-	-	A	36003351	G	A	36003351	3	1	597	1	0	0	0	0	1	0	0	0	4618	1294	45	2	1147	2	DMKN	19	36003351	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	26943566	36003351	23125632	111	52831										
ZNF829	0	genome.wustl.edu	37	chr19	37382578	37382578	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gtttttcatctgtatggattCtctgatgttgaataagttct	8	5	4	2			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	37382578	37382578	C	T	SNP	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	missense	c.1358	p.R453K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	101	0	0	191	99	34.14	-	-	-	T	37382578	C	T	37382578	3	4	597	1	0	0	0	0	1	0	0	0	18275	913	32	2	187	2	ZNF829	19	37382578	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	1379227	37382578	21746405	112	52832										
CNOT3	0	genome.wustl.edu	37	chr19	54659091	54659091	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gagaagtggggccagcggaaGaaggaaggcttcacctttga	16	7	1	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	54659091	54659091	G	T	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	1	known	missense	c.2208	p.K736N	1.000	pfam_NOT,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	32	0	0	26	8	23.53	-	-	-	T	54659091	G	T	54659091	3	4	597	1	0	0	0	0	1	0	0	0	3650	933	33	2	2274	2	CNOT3	19	54659091	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	17276513	54659091	4469892	113	52833										
NLRP9	0	genome.wustl.edu	37	chr19	56243480	56243480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	taccaaatgttctatgttacCaatataaatgaaaacttctt	3	7	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	56243480	56243480	C	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.1717	p.G573S	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	55	0	0	68	29	29.9	-	-	-	T	56243480	C	T	56243480	3	4	597	1	0	0	0	0	1	0	0	0	10556	594	21	4	1290	4	NLRP9	19	56243480	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	1584389	56243480	2885503	114	52834										
KIF16B	0	genome.wustl.edu	37	chr20	16496280	16496280	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	taaccttcaaatgcagacttCacgacatctgtgccgagggt	9	11	3	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	16496280	16496280	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	silent	c.261	p.V87	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	81	0	0	104	54	34.18	-	-	-	T	16496280	C	T	16496280	2	4	597	1	0	0	0	0	0	0	0	1	8330	813	29	2		2	KIF16B	20	16496280	Silent	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		16496280	46529240	115	52835										
ELMO2	0	genome.wustl.edu	37	chr20	44999096	44999096	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	actcaccttgttctgtttcaGagcacttttctctttcatgt	5	11	5	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	44999096	44999096	G	A	SNP	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	silent	c.1906	p.L636	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	134	0	0	319	49	13.32	-	-	-	A	44999096	G	A	44999096	2	1	597	1	0	0	0	0	0	0	0	1	5103	933	33	2		2	ELMO2	20	44999096	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	28502816	44999096	18026424	116	52836										
C21orf7	0	genome.wustl.edu	37	chr21	30464781	30464781	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	atttcagttttatgctctgcAacaagtttggccatgttgga	9	7	2	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	21	30464781	30464781	A	G	SNP	C21orf7	ENST00000341618	human	ensembl	69_37n	1	known	silent	c.249	p.A83	0.719	NULL	NULL	-	no_errors	C21orf7	HGNC	ENSG00000156265	117	0	0	233	32	12.08	-	-	-	G	30464781	A	G	30464781	2	3	597	1	0	0	0	0	0	0	0	1	2152	117	5	5		5	C21orf7	21	30464781	Silent	SNP	A	TCGA-BH-A1F8-01A-11D-A13L-09		30464781	17665114	117	52837										
DEPDC5	0	genome.wustl.edu	37	chr22	32257357	32257357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	tcctcctgtgacttcaggacGgggccttctttatggagttt	11	10	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	32257357	32257357	G	A	SNP	DEPDC5	ENST00000400246	human	ensembl	69_37n	1	known	missense	c.3268	p.G1090R	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	73	0	0	92	19	17.12	-	-	-	A	32257357	G	A	32257357	3	1	597	1	0	0	0	0	1	0	0	0	4478	1116	39	1	3385	1	DEPDC5	22	32257357	Missense_Mutation	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09		32257357	19047209	118	52838										
PDGFB	0	genome.wustl.edu	37	chr22	39636860	39636860	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	agacgtggagaggtacttacGaggcccatgataaacatctc	11	9	1	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	39636860	39636860	G	T	SNP	PDGFB	ENST00000381551	human	ensembl	69_37n	-1	known	silent	c.18	p.L6	0.001	NULL	pfam_PD_growth_factor,pfam_PDGF_N,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PDGFB	HGNC	ENSG00000100311	68	0	0	22	22	50	-	-	-	T	39636860	G	T	39636860	2	4	597	1	0	0	0	0	0	0	0	1	11731	1072	37	3		3	PDGFB	22	39636860	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	7379503	39636860	11667706	119	52839										
SHROOM2	0	genome.wustl.edu	37	chrX	9900268	9900268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	aggatcacagcagcacccacCgagtcagaaggcaccgaacc	10	15	2	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	9900268	9900268	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.2945	p.P982L	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	45	0	0	50	31	38.27	-	-	-	T	9900268	C	T	9900268	3	4	597	1	0	0	0	0	1	0	0	0	14383	652	23	1	2967	1	SHROOM2	23	9900268	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09		9900268	145370292	120	52840										
KLHL15	0	genome.wustl.edu	37	chrX	24024511	24024511	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gcctgaagaatctcatgaacGgtattcatactcagctctat	7	10	4	3			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	24024511	24024511	G	A	SNP	KLHL15	ENST00000328046	human	ensembl	69_37n	-1	known	silent	c.300	p.T100	0.303	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	87	0	0	65	60	48	-	-	-	A	24024511	G	A	24024511	2	1	597	1	0	0	0	0	0	0	0	1	8424	1103	39	1		1	KLHL15	23	24024511	Silent	SNP	G	TCGA-BH-A1F8-01A-11D-A13L-09	14124243	24024511	131246049	121	52841										
FOXP3	0	genome.wustl.edu	37	chrX	49113997	49113997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	gcacctgcagcacaggggtcCgggcgtgggcatccaccgtt	15	14	0	0			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	49113997	49113997	C	T	SNP	FOXP3	ENST00000376207	human	ensembl	69_37n	-1	known	missense	c.341	p.R114Q	0.981	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP3	HGNC	ENSG00000049768	85	0	0	6	5	45.45	-	-	-	T	49113997	C	T	49113997	3	4	597	1	0	0	0	0	1	0	0	0	6076	652	23	1	990	1	FOXP3	23	49113997	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	25089486	49113997	106156563	122	52842										
NUDT10	0	genome.wustl.edu	37	chrX	51075962	51075963	+	Frame_Shift_Ins	INS	-	-	A													0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggaccgctggatcgtgccggINSgcgggggcatggagcccgag							TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	51075962	51075963	-	A	INS	NUDT10	ENST00000356450	human	ensembl	69_37n	1	known	frame_shift_ins	c.145_146	p.G49fs	1.000:1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT10	HGNC	ENSG00000122824	66	0	0	31	4	11.43	-	-	-	A	51075963	-	A	51075962	7	5	597	1	0	1	1	0	0	0	0	0	10799	1232	43	0	147	0	NUDT10	23	51075962	Frame_Shift_Ins	INS	-	TCGA-BH-A1F8-01A-11D-A13L-09	1961965	51075962	104194598	123	52843										
MUM1L1	0	genome.wustl.edu	37	chrX	105450345	105450345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.443548387096774	55	8.56003406633602e-19	3.81738544474394	4.78669021284506	3.42147222960404	0.0100156400261796	0.137961914726812	41	ggaatcagagatgggggctgCagcatgccctgggagttgtt	17	7	1	1			TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	105450345	105450345	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	missense	c.920	p.A307V	0.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	23	0	0	18	18	50	-	-	-	T	105450345	C	T	105450345	3	4	597	1	0	0	0	0	1	0	0	0	10058	710	25	4	922	4	MUM1L1	23	105450345	Missense_Mutation	SNP	C	TCGA-BH-A1F8-01A-11D-A13L-09	54374383	105450345	49820215	124	52844										
ECE1	0	genome.wustl.edu	37	chr1	21582517	21582517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctgtgggatggtgatgttggCcagtgccgtctcaaagtcca	14	9	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	21582517	21582517	C	T	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.943	p.A315T	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	84	0	0	76	35	31.25	-	-	-	T	21582517	C	T	21582517	3	4	598	1	0	0	0	0	1	0	0	0	4924	739	26	4	1417	4	ECE1	1	21582517	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		21582517	227668104	1	52845										
TFAP2E	0	genome.wustl.edu	37	chr1	36054084	36054084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	caagtacaaggtgacggtggGggaggtgcagcggcgactct	18	8	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	36054084	36054084	G	A	SNP	TFAP2E	ENST00000373235	human	ensembl	69_37n	1	known	missense	c.716	p.G239E	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2E	HGNC	ENSG00000116819	35	0	0	26	5	16.13	-	-	-	A	36054084	G	A	36054084	3	1	598	1	0	0	0	0	1	0	0	0	15886	1232	43	4	730	4	TFAP2E	1	36054084	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	14471567	36054084	213196537	2	52846										
LEPR	0	genome.wustl.edu	37	chr1	66064359	66064359	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	acaggctgacaagattgtctCagctacatccctgctagtag	9	11	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	66064359	66064359	C	G	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	nonsense	c.866	p.S289*	0.001	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	76	0	0	79	11	12.22	-	-	-	G	66064359	C	G	66064359	4	3	598	1	0	0	0	0	0	1	0	0	8782	838	29	2	888	2	LEPR	1	66064359	Nonsense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	30010275	66064359	183186262	3	52847										
GPSM2	0	genome.wustl.edu	37	chr1	109466693	109466693	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ttgccagctcacagagtcgcCgtctggatgaccagagggct	13	12	2	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	109466693	109466693	C	A	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.1672	p.R558S	0.999	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	71	0	0	81	13	13.83	-	-	-	A	109466693	C	A	109466693	3	1	598	1	0	0	0	0	1	0	0	0	6786	652	23	3	1722	3	GPSM2	1	109466693	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	43402334	109466693	139783928	4	52848										
FAM40A	0	genome.wustl.edu	37	chr1	110584264	110584264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	agaccttcagagccgagctgGgtaggaccctggggatcctc	14	12	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	110584264	110584264	G	T	SNP	FAM40A	ENST00000369795	human	ensembl	69_37n	1	known	missense	c.757	p.G253C	1.000	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	118	0	0	87	19	17.92	-	-	-	T	110584264	G	T	110584264	3	4	598	1	0	0	0	0	1	0	0	0	5606	1246	43	4	783	4	FAM40A	1	110584264	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	1117571	110584264	138666357	5	52849										
TCHHL1	0	genome.wustl.edu	37	chr1	152059455	152059455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctctctggctggttcatctcCttcctgggagatctccttat	8	13	4	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	152059455	152059455	C	T	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.703	p.G235R	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	129	1	0.77	261	200	43.38	-	-	-	T	152059455	C	T	152059455	3	4	598	1	0	0	0	0	1	0	0	0	15796	690	24	4	2015	4	TCHHL1	1	152059455	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	41475191	152059455	97191166	6	52850										
KCNK2	0	genome.wustl.edu	37	chr1	215259881	215259881	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tcctggtggttgtcctctatCtgatcatcggagccaccgtg	11	12	3	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	215259881	215259881	C	G	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.217	p.L73V	1.000	prints_2pore_dom_K_chnl_TASK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	50	0	0	59	18	23.38	-	-	-	G	215259881	C	G	215259881	3	3	598	1	0	0	0	0	1	0	0	0	8120	912	32	2	266	2	KCNK2	1	215259881	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	63200426	215259881	33990740	7	52851										
USH2A	0	genome.wustl.edu	37	chr1	215814011	215814011	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gccgttcaggaggaaggtgtCactccagttcacacacacca	10	13	3	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	215814011	215814011	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.14857	p.D4953N	0.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	82	0	0	68	39	36.45	-	-	-	T	215814011	C	T	215814011	3	4	598	1	0	0	0	0	1	0	0	0	17133	826	29	2	771	2	USH2A	1	215814011	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	554130	215814011	33436610	8	52852										
ZNF669	0	genome.wustl.edu	37	chr1	247264537	247264537	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ccagtagaaatgttctcgttCagatcaagatttggaatttg	9	6	3	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	1	247264537	247264537	C	G	SNP	ZNF669	ENST00000358785	human	ensembl	69_37n	-1	known	nonstop	c.473	p.*158S	0.003	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	130	1	0.76	266	58	17.85	-	-	-	G	247264537	C	G	247264537	4	3	598	1	0	0	0	0	0	0	0	0	18172	813	29	2	864	2	ZNF669	1	247264537	Nonstop_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	31450526	247264537	1986084	9	52853										
DOK1	0	genome.wustl.edu	37	chr2	74783724	74783724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gcgcattgctccatgcccttCccaggactccctatactcag	7	17	1	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	2	74783724	74783724	C	T	SNP	DOK1	ENST00000233668	human	ensembl	69_37n	1	known	missense	c.929	p.S310F	0.002	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325	43	0	0	29	5	14.71	-	-	-	T	74783724	C	T	74783724	3	4	598	1	0	0	0	0	1	0	0	0	4731	855	30	2	947	2	DOK1	2	74783724	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		74783724	168415649	10	52854										
CMTM7	0	genome.wustl.edu	37	chr3	32491026	32491026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tccaagagttacaaccagagCggactggtagccggagcggt	14	10	0	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	3	32491026	32491026	C	T	SNP	CMTM7	ENST00000487007	human	ensembl	69_37n	1	known	missense	c.20	p.A7V	0.054	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CMTM7	HGNC	ENSG00000153551	91	0	0	97	20	17.09	-	-	-	T	32491026	C	T	32491026	3	4	598	1	0	0	0	0	1	0	0	0	3618	767	27	1	424	1	CMTM7	3	32491026	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		32491026	165531404	11	52855										
OXSR1	0	genome.wustl.edu	37	chr3	38224558	38224558	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aaaaaggagaaagtggcaatCaaacggataaaccttgagaa	10	5	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	3	38224558	38224558	C	G	SNP	OXSR1	ENST00000311806	human	ensembl	69_37n	1	known	missense	c.135	p.I45M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	OXSR1	HGNC	ENSG00000172939	94	0	0	101	33	24.63	-	-	-	G	38224558	C	G	38224558	3	3	598	1	0	0	0	0	1	0	0	0	11409	816	29	2	141	2	OXSR1	3	38224558	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	5733532	38224558	159797872	12	52856										
MST1R	0	genome.wustl.edu	37	chr3	49939908	49939908	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	acagcgctccacaccctcatCaattagtgtgtccagcaggt	8	14	2	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	3	49939908	49939908	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.1135	p.D379N	0.580	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	66	0	0	18	12	40	-	-	-	T	49939908	C	T	49939908	3	4	598	1	0	0	0	0	1	0	0	0	9963	826	29	2	3147	2	MST1R	3	49939908	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	11715350	49939908	148082522	13	52857										
TACC3	0	genome.wustl.edu	37	chr4	1737522	1737522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	cgaccccctcctgagggacaGtcctggtagaccagtgcccg	12	16	0	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	1737522	1737522	G	T	SNP	TACC3	ENST00000313288	human	ensembl	69_37n	1	known	missense	c.1709	p.S570I	1.000	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810	49	0	0	43	18	29.51	-	-	-	T	1737522	G	T	1737522	3	4	598	1	0	0	0	0	1	0	0	0	15595	1029	36	4	1735	4	TACC3	4	1737522	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		1737522	189416754	14	52858										
CPEB2	0	genome.wustl.edu	37	chr4	15067831	15067831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tgtgtgatgaatgccagggcGcacgctgtggtggaaaattt	15	6	0	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	15067831	15067831	G	A	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	missense	c.2932	p.A978T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	219	0	0	234	44	15.71	-	-	-	A	15067831	G	A	15067831	3	1	598	1	0	0	0	0	1	0	0	0	3831	1087	38	1	2987	1	CPEB2	4	15067831	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	13330309	15067831	176086445	15	52859										
PROM1	0	genome.wustl.edu	37	chr4	15981063	15981064	+	Frame_Shift_Ins	INS	-	-	A													0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	atatacatgatctttatgatINSaaccattattaccattttcc							TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	15981063	15981064	-	A	INS	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2537_2536	p.Y846fs	1.000:1.000	NULL	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	86	0	0	81	50	38.17	-	-	-	A	15981064	-	A	15981063	7	5	598	1	0	1	1	0	0	0	0	0	12636	1406	49	0	68	0	PROM1	4	15981063	Frame_Shift_Ins	INS	-	TCGA-BH-A1FC-01A-11D-A13L-09	913232	15981063	175173213	16	52860										
TEC	0	genome.wustl.edu	37	chr4	48148341	48148341	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	caaccacaaaataagagttaCcatagctgaatcctgcagtg	7	10	0	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	48148341	48148341	C	A	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	splice_site	c.1081+1	e11+1	1.000	-	-	-	no_errors	TEC	HGNC	ENSG00000135605	62	0	0	122	21	14.69	-	-	-	A	48148341	C	A	48148341	5	1	598	1	0	0	0	0	0	0	1	0	15837	521	18	4	841	4	TEC	4	48148341	Splice_Site	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	32167278	48148341	143005935	17	52861										
PPEF2	0	genome.wustl.edu	37	chr4	76804229	76804229	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	agtatttccttcccgtgtacCtggaaaaaatgatataaaca	6	8	0	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	76804229	76804229	C	G	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	splice_site	c.784-1	e9-1	0.999	-	-	-	no_errors	PPEF2	HGNC	ENSG00000156194	140	0	0	171	38	18.18	-	-	-	G	76804229	C	G	76804229	5	3	598	1	0	0	0	0	0	0	1	0	12381	695	24	4	1510	4	PPEF2	4	76804229	Splice_Site	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	28655888	76804229	114350047	18	52862										
GRID2	0	genome.wustl.edu	37	chr4	94159637	94159637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	agagcttggcagaggtgttcGaaaagtaagacaagacacac	12	7	0	4			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	94159637	94159637	G	A	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.1241	p.R414Q	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	76	0	0	100	18	15.25	-	-	-	A	94159637	G	A	94159637	3	1	598	1	0	0	0	0	1	0	0	0	6823	1058	37	1	1271	1	GRID2	4	94159637	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	17355408	94159637	96994639	19	52863										
SMARCAD1	0	genome.wustl.edu	37	chr4	95162063	95162063	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctctgctttaaaaggtggtgGgcccaggaaaagaaaattat	11	6	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	4	95162063	95162063	G	C	SNP	SMARCAD1	ENST00000359052	human	ensembl	69_37n	1	known	missense	c.611	p.G204A	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104	100	0	0	94	31	24.8	-	-	-	C	95162063	G	C	95162063	3	2	598	1	0	0	0	0	1	0	0	0	14861	1232	43	4	629	4	SMARCAD1	4	95162063	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	1002426	95162063	95992213	20	52864										
MARCH6	0	genome.wustl.edu	37	chr5	10390504	10390504	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gtgacgtgcacactgtgtgcAttcatcagcctggtgtggtt	13	9	2	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	5	10390504	10390504	A	C	SNP	MARCH6	ENST00000274140	human	ensembl	69_37n	1	known	silent	c.468	p.A156	0.353	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495	101	1	0.98	116	30	20.41	-	-	-	C	10390504	A	C	10390504	2	2	598	1	0	0	0	0	0	0	0	1	9376	204	8	5		5	MARCH6	5	10390504	Silent	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09		10390504	170524756	21	52865										
PCDHGA4	0	genome.wustl.edu	37	chr5	140735310	140735310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aacggttacttttccctggaCgtgcaaagtggggccgatgg	14	9	0	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	5	140735310	140735310	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	silent	c.543	p.D181	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	45	0	0	42	14	25	-	-	-	T	140735310	C	T	140735310	2	4	598	1	0	0	0	0	0	0	0	1	11629	535	19	1		1	PCDHGA4	5	140735310	Silent	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	130344806	140735310	40179950	22	52866										
COL12A1	0	genome.wustl.edu	37	chr6	75887490	75887490	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	caagttctccagtgttctccTcctctgattgggtggggtgg	13	10	3	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	6	75887490	75887490	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2326	p.R776G	0.979	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	136	0	0	127	30	19.11	-	-	-	C	75887490	T	C	75887490	3	2	598	1	0	0	0	0	1	0	0	0	3699	1550	54	5	7085	5	COL12A1	6	75887490	Missense_Mutation	SNP	T	TCGA-BH-A1FC-01A-11D-A13L-09		75887490	95227577	23	52867										
CNR1	0	genome.wustl.edu	37	chr6	88853975	88853975	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ggaccagggtcttggctaacCtaatgtccatgcgggcttgg	14	10	1	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	6	88853975	88853975	C	G	SNP	CNR1	ENST00000369499	human	ensembl	69_37n	-1	known	missense	c.1019	p.R340T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pirsf_Cnoid_rcpt_1,pfscan_GPCR_Rhodpsn_supfam,prints_Cnbnoid_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Cnoid_rcpt_1,pfscan_GPCR_Rhodpsn_supfam,prints_Cnoid_rcpt_1,prints_Cnbnoid_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432	89	0	0	80	12	13.04	-	-	-	G	88853975	C	G	88853975	3	3	598	1	0	0	0	0	1	0	0	0	3661	681	24	4	403	4	CNR1	6	88853975	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	12966485	88853975	82261092	24	52868										
RRAGD	0	genome.wustl.edu	37	chr6	90097153	90097153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	agctgttggaaacatcttccCggcatatcttattagtgctc	8	10	2	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	6	90097153	90097153	C	T	SNP	RRAGD	ENST00000369415	human	ensembl	69_37n	-1	known	missense	c.305	p.R102Q	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGD	HGNC	ENSG00000025039	77	0	0	72	18	20	-	-	-	T	90097153	C	T	90097153	3	4	598	1	0	0	0	0	1	0	0	0	13761	652	23	1	921	1	RRAGD	6	90097153	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	1243178	90097153	81017914	25	52869										
SYNE1	0	genome.wustl.edu	37	chr6	152861142	152861142	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tgtgaaagttcgtttttgtaCtatctcttgctcatctagaa	7	7	3	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	6	152861142	152861142	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.82	p.V28L	1.000	superfamily_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	171	0	0	187	35	15.77	-	-	-	G	152861142	C	G	152861142	3	3	598	1	0	0	0	0	1	0	0	0	15537	565	20	4	26981	4	SYNE1	6	152861142	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	62763989	152861142	18253925	26	52870										
IPCEF1	0	genome.wustl.edu	37	chr6	154489200	154489200	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	atagactagcttgctctaatGatttgtacagcttctccatt	6	9	2	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	6	154489200	154489200	G	A	SNP	IPCEF1	ENST00000367220	human	ensembl	69_37n	-1	known	missense	c.959	p.S320L	0.996	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706	146	0	0	128	29	18.47	-	-	-	A	154489200	G	A	154489200	3	1	598	1	0	0	0	0	1	0	0	0	7845	1294	45	2	365	2	IPCEF1	6	154489200	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	1628058	154489200	16625867	27	52871										
KIAA1324L	0	genome.wustl.edu	37	chr7	86539164	86539164	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	cagaatgatggattgtgatgAtaaggctgctcggaaaccct	12	7	0	4			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	7	86539164	86539164	A	G	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.2323	p.S775P	0.993	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	95	0	0	76	38	33.04	-	-	-	G	86539164	A	G	86539164	3	3	598	1	0	0	0	0	1	0	0	0	8276	333	12	5	794	5	KIAA1324L	7	86539164	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09		86539164	72599499	28	52872										
MUC17	0	genome.wustl.edu	37	chr7	100686638	100686638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	catcaacctccagtagtagtAccaccacatctttttcaact	3	14	3	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	7	100686638	100686638	A	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.11941	p.T3981A	0.229	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	67	0	0	96	20	16.95	-	-	-	G	100686638	A	G	100686638	3	3	598	1	0	0	0	0	1	0	0	0	10046	391	14	5	11951	5	MUC17	7	100686638	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	14147474	100686638	58452025	29	52873										
INTS10	0	genome.wustl.edu	37	chr8	19694625	19694625	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctccccattcaagatggaggCaaatcccaggaggaaccctc	9	14	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	8	19694625	19694625	C	T	SNP	INTS10	ENST00000521008	human	ensembl	69_37n	1	known	nonsense	c.34	p.Q12*	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS10	HGNC	ENSG00000104613	81	0	0	80	31	27.93	-	-	-	T	19694625	C	T	19694625	4	4	598	1	0	0	0	0	0	1	0	0	7830	697	25	4	1643	4	INTS10	8	19694625	Nonsense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		19694625	126669397	30	52874										
NEFM	0	genome.wustl.edu	37	chr8	24771805	24771805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ccctggagatggtgaaccacGagaaggctcaggtgcagctg	15	10	1	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	8	24771805	24771805	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	missense	c.499	p.E167K	1.000	pfam_F	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	23	0	0	21	4	16	-	-	-	A	24771805	G	A	24771805	3	1	598	1	0	0	0	0	1	0	0	0	10388	1059	37	1	501	1	NEFM	8	24771805	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	5077180	24771805	121592217	31	52875										
SH3GL2	0	genome.wustl.edu	37	chr9	17761476	17761476	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gctgtgatggaaataatgacTaaaacaattgaataccttca	7	6	1	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	9	17761476	17761476	T	A	SNP	SH3GL2	ENST00000380607	human	ensembl	69_37n	1	known	silent	c.156	p.T52	0.920	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295	51	0	0	82	29	26.13	-	-	-	A	17761476	T	A	17761476	2	1	598	1	0	0	0	0	0	0	0	1	14340	1509	53	5		5	SH3GL2	9	17761476	Silent	SNP	T	TCGA-BH-A1FC-01A-11D-A13L-09		17761476	123451955	32	52876										
SLC39A12	0	genome.wustl.edu	37	chr10	18289724	18289724	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gagtgaccactacgattgctAtcttgtgtcatgaaatccca	8	10	2	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	10	18289724	18289724	A	G	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.1729	p.I577V	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	90	0	0	92	138	60	-	-	-	G	18289724	A	G	18289724	3	3	598	1	0	0	0	0	1	0	0	0	14704	449	16	5	1767	5	SLC39A12	10	18289724	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09		18289724	117245023	33	52877										
AGAP5	0	genome.wustl.edu	37	chr10	75456920	75456920	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gcagaaaggctaaactccaaAgctatatgtatagagggaga	11	6	0	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	10	75456920	75456920	A	C	SNP	AGAP5	ENST00000374094	human	ensembl	69_37n	-1	known	silent	c.225	p.A75	0.576	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650	99	0	0	76	53	41.09	-	-	-	C	75456920	A	C	75456920	2	2	598	1	0	0	0	0	0	0	0	1	371	86	3	5		5	AGAP5	10	75456920	Silent	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	57167196	75456920	60077827	34	52878										
BCCIP	0	genome.wustl.edu	37	chr10	127519171	127519171	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	cagcaatgatgatatggatgAagatgaggtttttggtttca	12	3	1	5			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	10	127519171	127519171	A	C	SNP	BCCIP	ENST00000368759	human	ensembl	69_37n	1	known	missense	c.362	p.E121A	1.000	NULL	NULL	-	no_errors	BCCIP	HGNC	ENSG00000107949	156	0	0	190	34	15.18	-	-	-	C	127519171	A	C	127519171	3	2	598	1	0	0	0	0	1	0	0	0	1360	246	9	5	376	5	BCCIP	10	127519171	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	52062251	127519171	8015576	35	52879										
OR51Q1	0	genome.wustl.edu	37	chr11	5444283	5444283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tggccaatatctacctgctgGcacccccggtgatgaacccc	9	16	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	11	5444283	5444283	G	T	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	missense	c.853	p.A285S	0.489	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	42	0	0	27	7	20.59	-	-	-	T	5444283	G	T	5444283	3	4	598	1	0	0	0	0	1	0	0	0	11177	1203	42	4	855	4	OR51Q1	11	5444283	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		5444283	129562233	36	52880										
EHD1	0	genome.wustl.edu	37	chr11	64627773	64627773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gatgatgcggtccacacgctCcgcgaaccactccaggacgg	12	15	0	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	11	64627773	64627773	C	T	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	missense	c.538	p.E180K	1.000	pfam_Dynamin_GTPase	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	38	0	0	27	24	47.06	-	-	-	T	64627773	C	T	64627773	3	4	598	1	0	0	0	0	1	0	0	0	5012	864	30	2	1078	2	EHD1	11	64627773	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	59183490	64627773	70378743	37	52881										
CHORDC1	0	genome.wustl.edu	37	chr11	89938730	89938730	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctacaacagctccagtatttCatcctttaaattatcacaga	3	11	2	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	11	89938730	89938730	C	T	SNP	CHORDC1	ENST00000320585	human	ensembl	69_37n	-1	known	missense	c.567	p.M189I	1.000	pfam_CHORD	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	CHORDC1	HGNC	ENSG00000110172	70	0	0	60	12	16.67	-	-	-	T	89938730	C	T	89938730	3	4	598	1	0	0	0	0	1	0	0	0	3394	826	29	2	447	2	CHORDC1	11	89938730	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	25310957	89938730	45067786	38	52882										
DDX10	0	genome.wustl.edu	37	chr11	108577472	108577472	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ttctttttgtttaggtacaaAgaggatggtgaagctttgct	11	4	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	11	108577472	108577472	A	G	SNP	DDX10	ENST00000322536	human	ensembl	69_37n	1	known	silent	c.1230	p.K410	0.996	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105	121	0	0	101	33	24.63	-	-	-	G	108577472	A	G	108577472	2	3	598	1	0	0	0	0	0	0	0	1	4373	69	3	5		5	DDX10	11	108577472	Silent	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	18638742	108577472	26429044	39	52883										
OR8B12	0	genome.wustl.edu	37	chr11	124412897	124412897	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	agaatgctggagaggatgagGgcataagaaataaagacagt	14	3	0	5			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	11	124412897	124412897	G	T	SNP	OR8B12	ENST00000306842	human	ensembl	69_37n	-1	known	silent	c.654	p.A218	0.159	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B12	HGNC	ENSG00000170953	66	0	0	43	9	17.31	-	-	-	T	124412897	G	T	124412897	2	4	598	1	0	0	0	0	0	0	0	1	11299	1219	43	4		4	OR8B12	11	124412897	Silent	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	15835425	124412897	10593619	40	52884										
KCNA5	0	genome.wustl.edu	37	chr12	5154220	5154220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctggggccaacggcagcgggGtcatggccccgccctctggc	16	16	2	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	12	5154220	5154220	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.907	p.V303I	0.001	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	25	0	0	14	4	22.22	-	-	-	A	5154220	G	A	5154220	3	1	598	1	0	0	0	0	1	0	0	0	8060	1261	44	4	909	4	KCNA5	12	5154220	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		5154220	128697675	41	52885										
NUP107	0	genome.wustl.edu	37	chr12	69135678	69135678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gttgtgttttctgcttcataCgatattgcacagtactggtc	9	8	2	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	12	69135678	69135678	C	T	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.2588	p.T863M	0.996	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	141	0	0	233	39	14.34	-	-	-	T	69135678	C	T	69135678	3	4	598	1	0	0	0	0	1	0	0	0	10826	536	19	1	2694	1	NUP107	12	69135678	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	63981458	69135678	64716217	42	52886										
APAF1	0	genome.wustl.edu	37	chr12	99074109	99074109	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aaatcaaggctcatgaggatGaagtgctttgttgtgcattc	11	6	2	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	12	99074109	99074109	G	A	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.1975	p.E659K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	94	0	0	152	31	16.94	-	-	-	A	99074109	G	A	99074109	3	1	598	1	0	0	0	0	1	0	0	0	756	1291	45	2	2025	2	APAF1	12	99074109	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	29938431	99074109	34777786	43	52887										
KPNA3	0	genome.wustl.edu	37	chr13	50299608	50299608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctgatgctatgttagttaatGcccaagcagcttcaaactgt	8	9	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	13	50299608	50299608	G	A	SNP	KPNA3	ENST00000261667	human	ensembl	69_37n	-1	known	missense	c.413	p.A138V	1.000	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753	55	0	0	35	16	31.37	-	-	-	A	50299608	G	A	50299608	3	1	598	1	0	0	0	0	1	0	0	0	8484	1319	46	4	1196	4	KPNA3	13	50299608	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		50299608	64870270	44	52888										
MDP1	0	genome.wustl.edu	37	chr14	24683764	24683764	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	caaagtacctgaagaggtcaAagagctccagtagctggttg	12	8	1	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	14	24683764	24683764	A	C	SNP	MDP1	ENST00000288087	human	ensembl	69_37n	-1	known	missense	c.251	p.F84C	1.000	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	-	no_errors	MDP1	HGNC	ENSG00000213920	98	0	0	55	63	52.94	-	-	-	C	24683764	A	C	24683764	3	2	598	1	0	0	0	0	1	0	0	0	9487	14	1	5	291	5	MDP1	14	24683764	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09		24683764	82665776	45	52889										
PPP4R4	0	genome.wustl.edu	37	chr14	94718122	94718122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aagttactggaatagacttcGatttttggatacctgtgaat	9	5	0	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	14	94718122	94718122	G	A	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	missense	c.1754	p.R585Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	87	0	0	90	16	15.09	-	-	-	A	94718122	G	A	94718122	3	1	598	1	0	0	0	0	1	0	0	0	12482	1058	37	1	1889	1	PPP4R4	14	94718122	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	70034358	94718122	12631418	46	52890										
PAPOLA	0	genome.wustl.edu	37	chr14	97003383	97003383	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctttttgaagctccaaacttCtttcaaaagtacaagtatgt	5	8	2	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	14	97003383	97003383	C	A	SNP	PAPOLA	ENST00000216277	human	ensembl	69_37n	1	known	missense	c.1101	p.F367L	1.000	pfam_PolA_pol_RNA-bd_dom,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060	105	1	0.94	133	31	18.9	-	-	-	A	97003383	C	A	97003383	3	1	598	1	0	0	0	0	1	0	0	0	11502	912	32	2	1147	2	PAPOLA	14	97003383	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	2285261	97003383	10346157	47	52891										
CILP	0	genome.wustl.edu	37	chr15	65490934	65490934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	catcttgatttcatggaacaCggcactccccttcttgttga	7	12	3	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	15	65490934	65490934	C	T	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.1690	p.V564M	0.995	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	59	0	0	41	14	25.45	-	-	-	T	65490934	C	T	65490934	3	4	598	1	0	0	0	0	1	0	0	0	3458	536	19	1	1868	1	CILP	15	65490934	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		65490934	37040458	48	52892										
SNN	0	genome.wustl.edu	37	chr16	11769936	11769936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	atgtctattatggaccacagCcccaccacgggcgtggtcac	10	14	2	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	16	11769936	11769936	C	A	SNP	SNN	ENST00000329565	human	ensembl	69_37n	1	known	missense	c.21	p.S7R	1.000	pfam_SNN_transmemb	pfam_SNN_transmemb,pfam_SNN_linker,pfam_SNN_cytoplasm	-	no_errors	SNN	HGNC	ENSG00000184602	40	0	0	30	10	25	-	-	-	A	11769936	C	A	11769936	3	1	598	1	0	0	0	0	1	0	0	0	14938	738	26	4	23	4	SNN	16	11769936	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		11769936	78584817	49	52893										
C16orf62	0	genome.wustl.edu	37	chr16	19628021	19628021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	cctgtagattcatggggataCggtccagaaccagctggtgg	14	9	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	16	19628021	19628021	C	T	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	missense	c.1382	p.T461M	0.937	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	95	0	0	84	56	40	-	-	-	T	19628021	C	T	19628021	3	4	598	1	0	0	0	0	1	0	0	0	1838	536	19	1	1169	1	C16orf62	16	19628021	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	7858085	19628021	70726732	50	52894										
CHD9	0	genome.wustl.edu	37	chr16	53337698	53337698	+	Frame_Shift_Del	DEL	G	G	-													0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tgcttctaggactttgtatcGcattgaacttctaaggaaag							TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	16	53337698	53337698	G	-	DEL	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	frame_shift_del	c.5780	p.R1927fs	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	31	0	0	28	9	24.32	-	-	-	-	53337698	G	-	53337698	7	5	598	1	0	1	0	1	0	0	0	0	3361	1087	38	0	5898	0	CHD9	16	53337698	Frame_Shift_Del	DEL	G	TCGA-BH-A1FC-01A-11D-A13L-09	33709677	53337698	37017055	51	52895										
TP53	0	genome.wustl.edu	37	chr17	7577610	7577610	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tggtacagtcagagccaaccTaggagataacacaggcccaa	10	11	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	7577610	7577610	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.673-2	e6-2	0.999	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	67	0	0	26	25	49.02	-	-	-	C	7577610	T	C	7577610	5	2	598	1	0	0	0	0	0	0	1	0	16477	1536	53	5	619	5	TP53	17	7577610	Splice_Site	SNP	T	TCGA-BH-A1FC-01A-11D-A13L-09		7577610	73617600	52	52896										
CHD3	0	genome.wustl.edu	37	chr17	7797876	7797876	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	cctaccacctcgtctgccttGatcctgagcttgaccgggct	9	16	1	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	7797876	7797876	G	C	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.1219	p.D407H	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	54	0	0	44	11	20	-	-	-	C	7797876	G	C	7797876	3	2	598	1	0	0	0	0	1	0	0	0	3355	1290	45	2	1530	2	CHD3	17	7797876	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	220266	7797876	73397334	53	52897										
NCOR1	0	genome.wustl.edu	37	chr17	15943783	15943783	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gtaactgctggcagattaaaGatctcagttcctggctgagc	11	9	1	3			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	15943783	15943783	G	C	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.6705	p.I2235M	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	106	0	0	181	24	11.65	-	-	-	C	15943783	G	C	15943783	3	2	598	1	0	0	0	0	1	0	0	0	10307	932	33	2	633	2	NCOR1	17	15943783	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09	8145907	15943783	65251427	54	52898										
MMD	0	genome.wustl.edu	37	chr17	53471851	53471851	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aacacaactcccaagcaataAattaagcccccacaggcaag	5	14	0	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	53471851	53471851	A	T	SNP	MMD	ENST00000262065	human	ensembl	69_37n	-1	known	silent	c.561	p.I187	1.000	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960	44	0	0	44	30	40.54	-	-	-	T	53471851	A	T	53471851	2	4	598	1	0	0	0	0	0	0	0	1	9714	10	1	5		5	MMD	17	53471851	Silent	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	37528068	53471851	27723359	55	52899										
MSI2	0	genome.wustl.edu	37	chr17	55334455	55334455	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ttctgttatgttttctccctCtagtaaaatgtttatcggtg	7	7	3	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	55334455	55334455	C	T	SNP	MSI2	ENST00000322684	human	ensembl	69_37n	1	known	missense	c.47	p.S16F	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI2	HGNC	ENSG00000153944	58	0	0	70	27	27.84	-	-	-	T	55334455	C	T	55334455	3	4	598	1	0	0	0	0	1	0	0	0	9948	913	32	2	115	2	MSI2	17	55334455	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	1862604	55334455	25860755	56	52900										
CLTC	0	genome.wustl.edu	37	chr17	57763136	57763136	+	Frame_Shift_Del	DEL	T	T	-													0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	atggattttgccatgccctaTttcatccaggtcatgaagga							TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	57763136	57763136	T	-	DEL	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	frame_shift_del	c.4794	p.F1599fs	1.000	pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	71	0	0	119	21	15	-	-	-	-	57763136	T	-	57763136	7	5	598	1	0	1	0	1	0	0	0	0	3596	1500	52	0	4912	0	CLTC	17	57763136	Frame_Shift_Del	DEL	T	TCGA-BH-A1FC-01A-11D-A13L-09	2428681	57763136	23432074	57	52901										
DDX5	0	genome.wustl.edu	37	chr17	62496729	62496729	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ttgcttgattagcttcacgaAgcacagagataaggtcgctc	10	9	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	17	62496729	62496729	A	C	SNP	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	missense	c.1379	p.L460R	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	108	0	0	139	67	32.52	-	-	-	C	62496729	A	C	62496729	3	2	598	1	0	0	0	0	1	0	0	0	4398	72	3	5	473	5	DDX5	17	62496729	Missense_Mutation	SNP	A	TCGA-BH-A1FC-01A-11D-A13L-09	4733593	62496729	18698481	58	52902										
MYO9B	0	genome.wustl.edu	37	chr19	17320474	17320474	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	tcagccaactggaggctgcaGagagtatcgccttccgcagg	13	12	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	19	17320474	17320474	G	A	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.5704	p.E1902K	0.999	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	92	0	0	27	42	60.87	-	-	-	A	17320474	G	A	17320474	3	1	598	1	0	0	0	0	1	0	0	0	10157	943	33	2	5842	2	MYO9B	19	17320474	Missense_Mutation	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		17320474	41808509	59	52903										
CA11	0	genome.wustl.edu	37	chr19	49143044	49143044	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctgaatctcgcctccgctcaCgttgacaaagaggctgagaa	10	12	2	4			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	19	49143044	49143044	C	T	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	splice_site	c.567+1	e5+1	1.000	-	-	-	no_errors	CA11	HGNC	ENSG00000063180	68	0	0	24	9	27.27	-	-	-	T	49143044	C	T	49143044	5	4	598	1	0	0	0	0	0	0	1	0	2537	550	19	1	438	1	CA11	19	49143044	Splice_Site	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	31822570	49143044	9985939	60	52904										
GART	0	genome.wustl.edu	37	chr21	34903121	34903121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	gttagggccaccatctccctCcagtaatcgcttatggtcct	8	14	1	0			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	21	34903121	34903121	C	G	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	missense	c.667	p.E223Q	1.000	pfam_PRibGlycinamid_synth_ATP-grasp,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	66	0	0	31	14	31.11	-	-	-	G	34903121	C	G	34903121	3	3	598	1	0	0	0	0	1	0	0	0	6293	864	30	2	2433	2	GART	21	34903121	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		34903121	13226774	61	52905										
C21orf58	0	genome.wustl.edu	37	chr21	47737979	47737979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ttgctctgctgctgatgagtCcagcatggtgggagctgcag	15	9	1	2			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	21	47737979	47737979	C	G	SNP	C21orf58	ENST00000291691	human	ensembl	69_37n	-1	known	missense	c.256	p.D86H	0.938	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298	64	0	0	43	5	10.42	-	-	-	G	47737979	C	G	47737979	3	3	598	1	0	0	0	0	1	0	0	0	2149	855	30	2	740	2	C21orf58	21	47737979	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09	12834858	47737979	391916	62	52906										
DDX17	0	genome.wustl.edu	37	chr22	38891866	38891866	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	aaatacaagtactcttcaatCtagaacatttgccatagtca	4	9	4	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	22	38891866	38891866	C	G	SNP	DDX17	ENST00000396821	human	ensembl	69_37n	-1	known	missense	c.815	p.R272T	0.953	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201	81	0	0	54	31	36.47	-	-	-	G	38891866	C	G	38891866	3	3	598	1	0	0	0	0	1	0	0	0	4375	913	32	2	1412	2	DDX17	22	38891866	Missense_Mutation	SNP	C	TCGA-BH-A1FC-01A-11D-A13L-09		38891866	12412700	63	52907										
YIPF6	0	genome.wustl.edu	37	chrX	67738655	67738655	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.21875	14	0.00766920461815462	2.39708561020036	3.59562841530055	1.79781420765027	1	1	8	ctttgtgtgacactcgcattGtaagtacttgcattttcttt	7	8	1	1			TCGA-BH-A1FC-01A-11D-A13L-09	TCGA-BH-A1FC-11A-32D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84c77098-03d0-4b22-afb1-797703e85c6c	ba3a5382-893d-4365-88cd-b4922f5c070e	X	67738655	67738655	G	T	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	1	known	splice_site	c.308+1	e4+1	1.000	-	-	-	no_errors	YIPF6	HGNC	ENSG00000181704	458	1	0.22	241	139	36.48	-	-	-	T	67738655	G	T	67738655	5	4	598	1	0	0	0	0	0	0	1	0	17579	1391	48	4	323	4	YIPF6	23	67738655	Splice_Site	SNP	G	TCGA-BH-A1FC-01A-11D-A13L-09		67738655	87531905	64	52908										
FAM5B	0	genome.wustl.edu	37	chr1	177247731	177247731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccctgctgaaaaggctgcccGatgaccggttcctgaactcc	10	15	0	3			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	1	177247731	177247731	G	A	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	missense	c.1045	p.D349N	0.003	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	17	0	0	14	9	39.13	-	-	-	A	177247731	G	A	177247731	3	1	599	1	0	0	0	0	1	0	0	0	5638	1058	37	1	1067	1	FAM5B	1	177247731	Missense_Mutation	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09		177247731	72002890	1	52909										
RASGRP3	0	genome.wustl.edu	37	chr2	33749009	33749009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ataatccaaccttggaaagaTcgattgctttatttaatgga	7	6	0	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	33749009	33749009	T	C	SNP	RASGRP3	ENST00000402538	human	ensembl	69_37n	1	known	missense	c.580	p.S194P	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	41	0	0	49	8	14.04	-	-	-	C	33749009	T	C	33749009	3	2	599	1	0	0	0	0	1	0	0	0	13159	1435	50	5	602	5	RASGRP3	2	33749009	Missense_Mutation	SNP	T	TCGA-BH-A1FD-01A-11W-A14Q-09		33749009	209450364	2	52910										
TMEM37	0	genome.wustl.edu	37	chr2	120194728	120194729	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	gcctggtacgcagcgtgggcINSgccttggccgtggtggccgc							TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	120194728	120194729	-	T	INS	TMEM37	ENST00000306406	human	ensembl	69_37n	1	known	frame_shift_ins	c.285_286	p.A95fs	0.000:0.006	NULL	NULL	-	no_errors	TMEM37	HGNC	ENSG00000171227	37	0	0	20	3	13.04	-	-	-	T	120194729	-	T	120194728	7	5	599	1	0	1	1	0	0	0	0	0	16253	755	27	0	291	0	TMEM37	2	120194728	Frame_Shift_Ins	INS	-	TCGA-BH-A1FD-01A-11W-A14Q-09	86445719	120194728	123004645	3	52911										
TTN	0	genome.wustl.edu	37	chr2	179545856	179545856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcacgtttggtaattgaaAtacgtattttttcctcaaaa	5	6	2	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	179545856	179545856	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.29558	p.I9853T	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	38	0	0	51	29	36.25	-	-	-	G	179545856	A	G	179545856	3	3	599	1	0	0	0	0	1	0	0	0	16832	101	4	5	71139	5	TTN	2	179545856	Missense_Mutation	SNP	A	TCGA-BH-A1FD-01A-11W-A14Q-09	59351128	179545856	63653517	4	52912										
NAA11	0	genome.wustl.edu	37	chr4	80246803	80246803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgccggtgtgaacgcttcaCggccagtgaggtgatatggc	16	10	1	3			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	4	80246803	80246803	C	T	SNP	NAA11	ENST00000286794	human	ensembl	69_37n	-1	known	missense	c.229	p.V77M	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269	62	0	0	14	17	53.12	-	-	-	T	80246803	C	T	80246803	3	4	599	1	0	0	0	0	1	0	0	0	10189	536	19	1	464	1	NAA11	4	80246803	Missense_Mutation	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09		80246803	110907473	5	52913										
LARP7	0	genome.wustl.edu	37	chr4	113575296	113575296	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acttaatcagcctcgggaaaAgaaaagaggcactgaaaagg	11	7	1	3			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	4	113575296	113575296	A	T	SNP	LARP7	ENST00000324052	human	ensembl	69_37n	1	known	missense	c.1649	p.K550M	1.000	pfam_RRM_3	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	64	0	0	21	25	54.35	-	-	-	T	113575296	A	T	113575296	3	4	599	1	0	0	0	0	1	0	0	0	8687	72	3	5	1691	5	LARP7	4	113575296	Missense_Mutation	SNP	A	TCGA-BH-A1FD-01A-11W-A14Q-09	33328493	113575296	77578980	6	52914										
PIK3R1	0	genome.wustl.edu	37	chr5	67591083	67591083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcagctgagtatcgagaaaTtgacaaacgtatgaacagca	11	7	0	4			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	5	67591083	67591083	T	C	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1676	p.I559T	1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	64	0	0	33	32	49.23	-	-	-	C	67591083	T	C	67591083	3	2	599	1	0	0	0	0	1	0	0	0	11992	1493	52	5	1852	5	PIK3R1	5	67591083	Missense_Mutation	SNP	T	TCGA-BH-A1FD-01A-11W-A14Q-09		67591083	113324177	7	52915										
STK32A	0	genome.wustl.edu	37	chr5	146750276	146750276	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	attgtacacacgtttgagacGactgttgtaacttacccttc	7	10	0	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	5	146750276	146750276	G	C	SNP	STK32A	ENST00000397936	human	ensembl	69_37n	1	known	silent	c.720	p.T240	0.024	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32A	HGNC	ENSG00000169302	47	0	0	47	41	46.59	-	-	-	C	146750276	G	C	146750276	2	2	599	1	0	0	0	0	0	0	0	1	15388	1045	37	3		3	STK32A	5	146750276	Silent	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09	79159193	146750276	34164984	8	52916										
FAM22F	0	genome.wustl.edu	37	chr9	97084511	97084511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catctcgtagaagatcatccGgtcaaagttgctcgtgtgct	10	10	3	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	9	97084511	97084511	G	A	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.814	p.R272W	0.068	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	109	1	0.91	21	22	51.16	-	-	-	A	97084511	G	A	97084511	3	1	599	1	0	0	0	0	1	0	0	0	5587	1115	39	1	1476	1	FAM22F	9	97084511	Missense_Mutation	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09		97084511	44128920	9	52917										
TAF3	0	genome.wustl.edu	37	chr10	8006644	8006644	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ataaaacgattgaggcctctAtcgatgctgtgattgcacga	10	8	1	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	10	8006644	8006644	A	G	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	missense	c.1171	p.I391V	0.936	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	23	0	0	30	17	36.17	-	-	-	G	8006644	A	G	8006644	3	3	599	1	0	0	0	0	1	0	0	0	15617	449	16	5	1181	5	TAF3	10	8006644	Missense_Mutation	SNP	A	TCGA-BH-A1FD-01A-11W-A14Q-09		8006644	127528103	10	52918										
PDCD11	0	genome.wustl.edu	37	chr10	105200305	105200305	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacaggcgcagaagcggggCgggcgggagtgccgggagtc	21	11	0	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	10	105200305	105200305	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	silent	c.4407	p.G1469	0.964	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	35	0	0	24	13	35.14	-	-	-	T	105200305	C	T	105200305	2	4	599	1	0	0	0	0	0	0	0	1	11690	755	27	1		1	PDCD11	10	105200305	Silent	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09	97193661	105200305	30334442	11	52919										
DCHS1	0	genome.wustl.edu	37	chr11	6644754	6644754	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgagagtgcctggaggctgaTtctcggccacgctggtgctg	16	11	1	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	6644754	6644754	T	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.8153	p.N2718S	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	34	0	0	13	7	35	-	-	-	C	6644754	T	C	6644754	3	2	599	1	0	0	0	0	1	0	0	0	4318	1493	52	5	1747	5	DCHS1	11	6644754	Missense_Mutation	SNP	T	TCGA-BH-A1FD-01A-11W-A14Q-09		6644754	128361762	12	52920										
PIK3C2A	0	genome.wustl.edu	37	chr11	17190547	17190547	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgacttttgaatctgttaTctccaaatcagtccttgctt	6	10	3	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	17190547	17190547	T	A	SNP	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	missense	c.742	p.I248L	0.893	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	32	0	0	46	38	45.24	-	-	-	A	17190547	T	A	17190547	3	1	599	1	0	0	0	0	1	0	0	0	11983	1435	50	5	4446	5	PIK3C2A	11	17190547	Missense_Mutation	SNP	T	TCGA-BH-A1FD-01A-11W-A14Q-09	10545793	17190547	117815969	13	52921										
RAB30	0	genome.wustl.edu	37	chr11	82708280	82708280	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccttacctgagtgaatcttcGgacgaggcacgtcttcccca	9	14	2	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	82708280	82708280	G	T	SNP	RAB30	ENST00000260056	human	ensembl	69_37n	-1	known	silent	c.79	p.R27	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB30	HGNC	ENSG00000137502	81	0	0	84	53	38.69	-	-	-	T	82708280	G	T	82708280	2	4	599	1	0	0	0	0	0	0	0	1	13002	1124	39	3		3	RAB30	11	82708280	Silent	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09	65517733	82708280	52298236	14	52922										
PTHLH	0	genome.wustl.edu	37	chr12	28116584	28116584	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taggggacacctccgaggtaGctctgatttcagctgtgtgg	14	9	2	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	12	28116584	28116584	G	A	SNP	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	missense	c.221	p.A74V	1.000	pfam_PTH/PTH-rel	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	58	0	0	53	33	38.37	-	-	-	A	28116584	G	A	28116584	3	1	599	1	0	0	0	0	1	0	0	0	12842	971	34	4	324	4	PTHLH	12	28116584	Missense_Mutation	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09		28116584	105735311	15	52923										
FBN1	0	genome.wustl.edu	37	chr15	48707819	48707819	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccatagctgcagggggcctgCgcagagccacattcattgat	12	12	1	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	15	48707819	48707819	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	silent	c.7965	p.A2655	0.000	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	23	0	0	36	16	30.77	-	-	-	T	48707819	C	T	48707819	2	4	599	1	0	0	0	0	0	0	0	1	5748	755	27	1		1	FBN1	15	48707819	Silent	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09		48707819	53823573	16	52924										
IFT140	0	genome.wustl.edu	37	chr16	1621431	1621431	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgggaaagatcaaagcttttAaagtgagccaagtctgtccc	10	9	2	2			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	16	1621431	1621431	A	T	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.1629	p.F543L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	26	0	0	21	11	34.38	-	-	-	T	1621431	A	T	1621431	3	4	599	1	0	0	0	0	1	0	0	0	7610	359	13	5	2831	5	IFT140	16	1621431	Missense_Mutation	SNP	A	TCGA-BH-A1FD-01A-11W-A14Q-09		1621431	88733322	17	52925										
ANKRD11	0	genome.wustl.edu	37	chr16	89345615	89345615	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcttctcctcgatcttcttCctgatctgcaggtattcgaa	7	13	4	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	16	89345615	89345615	C	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.7335	p.R2445S	0.749	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	42	0	0	26	36	58.06	-	-	-	A	89345615	C	A	89345615	3	1	599	1	0	0	0	0	1	0	0	0	639	854	30	2	676	2	ANKRD11	16	89345615	Missense_Mutation	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09	87724184	89345615	1009138	18	52926										
ZZEF1	0	genome.wustl.edu	37	chr17	3992057	3992057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctcctctgtgtcctttctgCagtgtgcacaggtgacgctc	10	13	3	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	17	3992057	3992057	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.2156	p.C719Y	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	75	0	0	72	14	16.28	-	-	-	T	3992057	C	T	3992057	3	4	599	1	0	0	0	0	1	0	0	0	18346	710	25	4	6901	4	ZZEF1	17	3992057	Missense_Mutation	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09		3992057	77203153	19	52927										
TP53	0	genome.wustl.edu	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	17	7578413	7578413	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.517	p.V173L	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	48	0	0	36	45	55.56	-	-	-	G	7578413	C	G	7578413	3	3	599	1	0	0	0	0	1	0	0	0	16477	478	17	4	781	4	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09	3586356	7578413	73616797	20	52928										
FBN3	0	genome.wustl.edu	37	chr19	8210774	8210775	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	cttctgacacagacaggacgINSccccccggcaggtgccccca							TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	19	8210774	8210775	-	C	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.398_397	p.A133fs	0.998:1.000	smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	27	0	0	11	2	15.38	-	-	-	C	8210775	-	C	8210774	7	5	599	1	0	1	1	0	0	0	0	0	5750	1087	38	0	8271	0	FBN3	19	8210774	Frame_Shift_Ins	INS	-	TCGA-BH-A1FD-01A-11W-A14Q-09		8210774	50918209	21	52929										
CYP24A1	0	genome.wustl.edu	37	chr20	52773723	52773723	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcacctgaggcgtattatcGctggcaaaacgcgatgggga	13	10	1	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	20	52773723	52773723	G	A	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	nonsense	c.1540	p.R514*	0.338	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	26	0	0	35	14	28.57	-	-	-	A	52773723	G	A	52773723	4	1	599	1	0	0	0	0	0	1	0	0	4185	1095	38	1	8	1	CYP24A1	20	52773723	Nonsense_Mutation	SNP	G	TCGA-BH-A1FD-01A-11W-A14Q-09		52773723	10251797	22	52930										
MICAL3	0	genome.wustl.edu	37	chr22	18305741	18305742	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	gctcagcaccagtgtcccctINSgggtccccatcctctgctgc							TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	22	18305741	18305742	-	G	INS	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3279_3278	p.G1094fs	0.023:0.626	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	72	0	0	17	2	10.53	-	-	-	G	18305742	-	G	18305741	7	5	599	1	0	1	1	0	0	0	0	0	9642	1567	55	0	2769	0	MICAL3	22	18305741	Frame_Shift_Ins	INS	-	TCGA-BH-A1FD-01A-11W-A14Q-09		18305741	32998825	23	52931										
NDUFA1	0	genome.wustl.edu	37	chrX	119005895	119005895	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgtggttcgagattctcccCggactctccgtcatgggcgt	12	12	3	1			TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	X	119005895	119005895	C	T	SNP	NDUFA1	ENST00000371437	human	ensembl	69_37n	1	known	silent	c.21	p.P7	0.730	pirsf_NADH_Ub_cplx-1_asu_su-1	pirsf_NADH_Ub_cplx-1_asu_su-1	-	no_errors	NDUFA1	HGNC	ENSG00000125356	52	0	0	31	4	11.43	-	-	-	T	119005895	C	T	119005895	2	4	599	1	0	0	0	0	0	0	0	1	10331	639	23	1		1	NDUFA1	23	119005895	Silent	SNP	C	TCGA-BH-A1FD-01A-11W-A14Q-09		119005895	36264665	24	52932										
MUC1	0	genome.wustl.edu	37	chr1	155160715	155160715	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	gagaggaattaaactggaggTttgaaatgtgaaaagacagg	14	2	0	4			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155160715	155160715	T	C	SNP	MUC1	ENST00000425082	human	ensembl	69_37n	-1	known	missense	c.1070	p.N357S	0.793	pfam_SEA,smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC1	HGNC	ENSG00000185499	32	0	0	95	21	17.95	-	-	-	C	155160715	T	C	155160715	3	2	600	1	0	0	0	0	1	0	0	0	10042	1725	60	5	639	5	MUC1	1	155160715	Missense_Mutation	SNP	T	TCGA-BH-A1FE-01A-11D-A13L-09		155160715	94089906	1	52933										
GON4L	0	genome.wustl.edu	37	chr1	155753682	155753682	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	acatcagtaacagaagctggTttgggatgaaaaattatcaa	9	5	2	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155753682	155753682	T	G	SNP	GON4L	ENST00000477831	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	16	0	0	11	25	69.44	-	-	-	G	155753682	T	G	155753682	5	3	600	1	0	0	0	0	0	0	1	0	6621	1740	60	5		5	GON4L	1	155753682	Splice_Site	SNP	T	TCGA-BH-A1FE-01A-11D-A13L-09	592967	155753682	93496939	2	52934										
SPHKAP	0	genome.wustl.edu	37	chr2	228855865	228855865	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	caccagcaggctcctctgggGgctggctgttcccgtaggcg	15	14	1	0			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	2	228855865	228855865	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4810	p.P1604T	0.003	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	48	0	0	80	20	20	-	-	-	T	228855865	G	T	228855865	3	4	600	1	0	0	0	0	1	0	0	0	15139	1232	43	4	300	4	SPHKAP	2	228855865	Missense_Mutation	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09		228855865	14343508	3	52935										
PIK3CA	0	genome.wustl.edu	37	chr3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	cagtaggcaaccgtgaagaaAagatcctcaatcgagaaatt	9	8	1	4			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	178916944	178916944	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.331	p.K111E	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	37	0	0	42	20	32.26	-	-	-	G	178916944	A	G	178916944	3	3	600	1	0	0	0	0	1	0	0	0	11987	15	1	5	333	5	PIK3CA	3	178916944	Missense_Mutation	SNP	A	TCGA-BH-A1FE-01A-11D-A13L-09		178916944	19105486	4	52936										
RHAG	0	genome.wustl.edu	37	chr6	49582475	49582475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	acacaggcagcgagagagaaGtacgtgtttacaatggccct	12	9	0	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	6	49582475	49582475	G	A	SNP	RHAG	ENST00000371175	human	ensembl	69_37n	-1	known	silent	c.732	p.Y244	1.000	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077	54	0	0	108	17	13.6	-	-	-	A	49582475	G	A	49582475	2	1	600	1	0	0	0	0	0	0	0	1	13399	1024	36	4		4	RHAG	6	49582475	Silent	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09		49582475	121532592	5	52937										
MUC17	0	genome.wustl.edu	37	chr7	100685739	100685739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	atctcctgtgactcctgaagGtaccaccatgccaatctgga	8	13	2	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	7	100685739	100685739	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.11042	p.G3681D	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	33	0	0	95	26	21.49	-	-	-	A	100685739	G	A	100685739	3	1	600	1	0	0	0	0	1	0	0	0	10046	1261	44	4	11052	4	MUC17	7	100685739	Missense_Mutation	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09		100685739	58452924	6	52938										
CSMD3	0	genome.wustl.edu	37	chr8	113299452	113299452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	atggccgggagtacctggatCgccacatgtcccagtagcat	12	12	0	0			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	8	113299452	113299452	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.9172	p.D3058N	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	36	0	0	72	27	27.27	-	-	-	T	113299452	C	T	113299452	3	4	600	1	0	0	0	0	1	0	0	0	3978	884	31	1	2007	1	CSMD3	8	113299452	Missense_Mutation	SNP	C	TCGA-BH-A1FE-01A-11D-A13L-09		113299452	33064570	7	52939										
C9orf66	0	genome.wustl.edu	37	chr9	214549	214550	+	Frame_Shift_Ins	INS	-	-	G													0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	cccgacctcgccagctttgtINSggggctcccccgacttgcct							TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	214549	214550	-	G	INS	C9orf66	ENST00000382387	human	ensembl	69_37n	-1	known	frame_shift_ins	c.848_847	p.H283fs	0.000:0.000	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784	18	0	0	28	8	22.22	-	-	-	G	214550	-	G	214549	7	5	600	1	0	1	1	0	0	0	0	0	2515	1696	59	0	43	0	C9orf66	9	214549	Frame_Shift_Ins	INS	-	TCGA-BH-A1FE-01A-11D-A13L-09		214549	140998882	8	52940										
TLN1	0	genome.wustl.edu	37	chr9	35706350	35706350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	tgagcggctcaaagtactgcGccatctgggacacctgaggc	13	12	2	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	35706350	35706350	G	A	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.5204	p.A1735V	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	19	0	0	48	11	18.64	-	-	-	A	35706350	G	A	35706350	3	1	600	1	0	0	0	0	1	0	0	0	16042	1087	38	1	2493	1	TLN1	9	35706350	Missense_Mutation	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09	35491801	35706350	105507081	9	52941										
DIAPH3	0	genome.wustl.edu	37	chr13	60435515	60435515	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	gcactgaagatcagagccatGaaatgtttcttaaaaaggca	9	7	2	4			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	13	60435515	60435515	G	A	SNP	DIAPH3	ENST00000498416	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DIAPH3	HGNC	ENSG00000139734	58	0	0	108	30	21.74	-	-	-	A	60435515	G	A	60435515	1	1	600	0	1	0	0	0	0	0	0	0	4556	1305	45	2		2	DIAPH3	13	60435515	RNA	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09		60435515	54734363	10	52942										
TP53	0	genome.wustl.edu	37	chr17	7577541	7577541	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	tggtgaggatgggcctccggTtcatgccgcccatgcaggaa	15	11	1	1			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	7577541	7577541	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.740	p.N247I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	41	0	0	53	12	18.46	-	-	-	A	7577541	T	A	7577541	3	1	600	1	0	0	0	0	1	0	0	0	16477	1725	60	5	550	5	TP53	17	7577541	Missense_Mutation	SNP	T	TCGA-BH-A1FE-01A-11D-A13L-09		7577541	73617669	11	52943										
ERBB2	0	genome.wustl.edu	37	chr17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	aagccaacaaagaaatcttaGacgtaagcccctccaccctc	5	15	1	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	37880261	37880261	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2305	p.D769Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	37	0	0	92	15	14.02	-	-	-	T	37880261	G	T	37880261	3	4	600	1	0	0	0	0	1	0	0	0	5243	942	33	2	2379	2	ERBB2	17	37880261	Missense_Mutation	SNP	G	TCGA-BH-A1FE-01A-11D-A13L-09	30302720	37880261	43314949	12	52944										
ZBTB33	0	genome.wustl.edu	37	chrX	119389142	119389142	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	1	0.871886716160037	1.34594594594595	NA	1.34594594594595	1	1	0	aaggttgacactggaaaagaAcctccagtagggaccactac	10	10	0	2			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	X	119389142	119389142	A	C	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	missense	c.1872	p.E624D	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	35	0	0	76	28	26.92	-	-	-	C	119389142	A	C	119389142	3	2	600	1	0	0	0	0	1	0	0	0	17632	40	2	5	1874	5	ZBTB33	23	119389142	Missense_Mutation	SNP	A	TCGA-BH-A1FE-01A-11D-A13L-09		119389142	35881418	13	52945										
PRDM16	0	genome.wustl.edu	37	chr1	3328646	3328646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	gctcggacctggacagcgacGtggacagcgaccctgacaag	14	13	0	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	3328646	3328646	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	missense	c.1885	p.V629M	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	13	0	0	3	5	62.5	-	-	-	A	3328646	G	A	3328646	3	1	601	1	0	0	0	0	1	0	0	0	12538	1145	40	1	1919	1	PRDM16	1	3328646	Missense_Mutation	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09		3328646	245921975	1	52946										
WDR47	0	genome.wustl.edu	37	chr1	109553818	109553818	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	tttgctgataagaggagtcaAaagatcagcatatgcagctt	10	6	2	3			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	109553818	109553818	A	C	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.871	p.L291V	0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	78	0	0	62	9	12.68	-	-	-	C	109553818	A	C	109553818	3	2	601	1	0	0	0	0	1	0	0	0	17397	11	1	5	1956	5	WDR47	1	109553818	Missense_Mutation	SNP	A	TCGA-BH-A1FG-01A-11D-A13L-09	106225172	109553818	139696803	2	52947										
TNFSF4	0	genome.wustl.edu	37	chr1	173155705	173155705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	atggataagaatcagttctcCgccattcacatggaagtcat	8	9	4	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	173155705	173155705	C	T	SNP	TNFSF4	ENST00000281834	human	ensembl	69_37n	-1	known	missense	c.502	p.G168R	0.930	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	-	no_errors	TNFSF4	HGNC	ENSG00000117586	48	0	0	23	7	23.33	-	-	-	T	173155705	C	T	173155705	3	4	601	1	0	0	0	0	1	0	0	0	16405	661	23	1	53	1	TNFSF4	1	173155705	Missense_Mutation	SNP	C	TCGA-BH-A1FG-01A-11D-A13L-09	63601887	173155705	76094916	3	52948										
TMEM214	0	genome.wustl.edu	37	chr2	27262671	27262671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ctgctagccaacaagcgtgtGccaagctctactcctacagt	8	14	1	0			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	27262671	27262671	G	A	SNP	TMEM214	ENST00000238788	human	ensembl	69_37n	1	known	missense	c.1588	p.A530T	0.041	pfam_DUF2359_TMEM214	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	106	0	0	44	15	25.42	-	-	-	A	27262671	G	A	27262671	3	1	601	1	0	0	0	0	1	0	0	0	16232	1319	46	4	1642	4	TMEM214	2	27262671	Missense_Mutation	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09		27262671	215936702	4	52949										
WDR54	0	genome.wustl.edu	37	chr2	74652076	74652076	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	cggtcagggccagaattcacAttattgacccgcattccagg	10	12	2	2			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	74652076	74652076	A	G	SNP	WDR54	ENST00000348227	human	ensembl	69_37n	1	known	silent	c.609	p.T203	0.420	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR54	HGNC	ENSG00000005448	70	0	0	50	17	25	-	-	-	G	74652076	A	G	74652076	2	3	601	1	0	0	0	0	0	0	0	1	17403	204	8	5		5	WDR54	2	74652076	Silent	SNP	A	TCGA-BH-A1FG-01A-11D-A13L-09	47389405	74652076	168547297	5	52950										
TRIP12	0	genome.wustl.edu	37	chr2	230663600	230663601	+	Frame_Shift_Del	DEL	GA	GA	-													0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ccccacttcacctattattgGagatggtatcctttgaggca							TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	230663600	230663601	GA	-	DEL	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	frame_shift_del	c.3248_3247	p.S1083fs	1.000:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	127	0	0	72	19	20.65	-	-	-	-	230663601	GA	-	230663600	7	5	601	1	0	1	0	1	0	0	0	0	16652	1174	41	0	2810	0	TRIP12	2	230663600	Frame_Shift_Del	DEL	GA	TCGA-BH-A1FG-01A-11D-A13L-09	156011524	230663600	12535773	6	52951										
GPR98	0	genome.wustl.edu	37	chr5	89986809	89986809	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	tgcccctggggaaaccattcAaaccttgttgttagaggtcc	10	11	1	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	5	89986809	89986809	A	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.6902	p.Q2301L	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	122	0	0	45	29	39.19	-	-	-	T	89986809	A	T	89986809	3	4	601	1	0	0	0	0	1	0	0	0	6772	130	5	5	7024	5	GPR98	5	89986809	Missense_Mutation	SNP	A	TCGA-BH-A1FG-01A-11D-A13L-09		89986809	90928451	7	52952										
PPP2R2A	0	genome.wustl.edu	37	chr8	26227655	26227655	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	tgtctattttcacagtgttgTcatgactggatcttacaata	7	7	4	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	8	26227655	26227655	T	A	SNP	PPP2R2A	ENST00000380737	human	ensembl	69_37n	1	known	missense	c.1070	p.V357D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914	62	0	0	11	24	68.57	-	-	-	A	26227655	T	A	26227655	3	1	601	1	0	0	0	0	1	0	0	0	12461	1667	58	5	1149	5	PPP2R2A	8	26227655	Missense_Mutation	SNP	T	TCGA-BH-A1FG-01A-11D-A13L-09		26227655	120136367	8	52953										
AKR1C4	0	genome.wustl.edu	37	chr10	5254676	5254676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	cagtgctctgggaacccaacGacataaactatggtaataag	9	9	1	0			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	10	5254676	5254676	G	A	SNP	AKR1C4	ENST00000263126	human	ensembl	69_37n	1	known	missense	c.668	p.R223Q	0.155	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610	101	0	0	57	9	13.64	-	-	-	A	5254676	G	A	5254676	3	1	601	1	0	0	0	0	1	0	0	0	472	1058	37	1	690	1	AKR1C4	10	5254676	Missense_Mutation	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09		5254676	130280071	9	52954										
RASAL1	0	genome.wustl.edu	37	chr12	113553739	113553739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	tgcttgcctgacgcacccacCtctgctggcccctgcacaga	9	18	1	2			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	113553739	113553739	C	A	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.849	p.E283D	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	27	0	0	10	8	44.44	-	-	-	A	113553739	C	A	113553739	3	1	601	1	0	0	0	0	1	0	0	0	13146	695	24	4	1617	4	RASAL1	12	113553739	Missense_Mutation	SNP	C	TCGA-BH-A1FG-01A-11D-A13L-09		113553739	20298156	10	52955										
RPLP0	0	genome.wustl.edu	37	chr12	120635133	120635133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ggatccttttaccttttcagCaagtgggaaggtgtaatccg	11	8	1	0			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	120635133	120635133	C	T	SNP	RPLP0	ENST00000228306	human	ensembl	69_37n	-1	known	missense	c.784	p.A262T	1.000	pfam_Ribosomal_60S	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S	-	no_errors	RPLP0	HGNC	ENSG00000089157	53	0	0	29	15	34.09	-	-	-	T	120635133	C	T	120635133	3	4	601	1	0	0	0	0	1	0	0	0	13690	710	25	4	177	4	RPLP0	12	120635133	Missense_Mutation	SNP	C	TCGA-BH-A1FG-01A-11D-A13L-09	7081394	120635133	13216762	11	52956										
NBEA	0	genome.wustl.edu	37	chr13	35785239	35785239	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	tcctcctcttctagttttgtGaatggtgctactagcaaaaa	7	9	2	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	13	35785239	35785239	G	C	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	silent	c.5571	p.V1857	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	147	0	0	70	44	38.6	-	-	-	C	35785239	G	C	35785239	2	2	601	1	0	0	0	0	0	0	0	1	10259	1277	45	2		2	NBEA	13	35785239	Silent	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09		35785239	79384639	12	52957										
LILRA4	0	genome.wustl.edu	37	chr19	54849483	54849483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	caccacagggcttggcagtgCggacagggtgggtctgctgt	17	10	1	0			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	19	54849483	54849483	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.379	p.A127T	0.035	pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	42	0	0	13	10	43.48	-	-	-	T	54849483	C	T	54849483	3	4	601	1	0	0	0	0	1	0	0	0	8842	768	27	1	1140	1	LILRA4	19	54849483	Missense_Mutation	SNP	C	TCGA-BH-A1FG-01A-11D-A13L-09		54849483	4279500	13	52958										
YIPF6	0	genome.wustl.edu	37	chrX	67741223	67741223	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ccttttctcagaatgctgcaAagagactctgcagatagtga	9	9	2	4			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	67741223	67741223	A	G	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	1	known	silent	c.318	p.Q106	0.981	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704	170	0	0	89	67	42.95	-	-	-	G	67741223	A	G	67741223	2	3	601	1	0	0	0	0	0	0	0	1	17579	11	1	5		5	YIPF6	23	67741223	Silent	SNP	A	TCGA-BH-A1FG-01A-11D-A13L-09		67741223	87529337	14	52959										
RAB40A	0	genome.wustl.edu	37	chrX	102755501	102755501	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ccagagcttcagcttcacccGctggccgtccagcaggatgg	12	15	2	1			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	102755501	102755501	G	A	SNP	RAB40A	ENST00000304236	human	ensembl	69_37n	-1	known	missense	c.184	p.R62W	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476	101	0	0	54	8	12.9	-	-	-	A	102755501	G	A	102755501	3	1	601	1	0	0	0	0	1	0	0	0	13022	1086	38	1	653	1	RAB40A	23	102755501	Missense_Mutation	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09	35014278	102755501	52515059	15	52960										
MAMLD1	0	genome.wustl.edu	37	chrX	149613879	149613879	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.968086459607629	0.795454545454545	7.15909090909091	0	1	1	0	ccagaaagctccaggaatcgGtcagacaatgggccatgggg	14	10	1	2			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	149613879	149613879	G	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	splice_site	c.96+1	e1+1	1.000	-	-	-	no_errors	MAMLD1	HGNC	ENSG00000013619	98	0	0	32	25	43.86	-	-	-	A	149613879	G	A	149613879	5	1	601	1	0	0	0	0	0	0	1	0	9279	1275	44	4	99	4	MAMLD1	23	149613879	Splice_Site	SNP	G	TCGA-BH-A1FG-01A-11D-A13L-09	46858378	149613879	5656681	16	52961										
NSUN5	0	genome.wustl.edu	37	chr7	72719078	72719078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	1	0.876864048099363	1.41666666666667	NA	1.41666666666667	1	1	0	aaaatgcttccccttgagggCtcgtaagtcatcgaggctgc	11	11	1	1			TCGA-BH-A1FH-01A-12D-A13L-09	TCGA-BH-A1FH-11B-42D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd6bd486-6371-4892-863e-64838fcea624	0eff2896-73b8-4a34-90dd-96351fcb0eb2	7	72719078	72719078	C	T	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	missense	c.517	p.A173T	0.255	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	54	0	0	95	15	13.64	-	-	-	T	72719078	C	T	72719078	3	4	602	1	0	0	0	0	1	0	0	0	10754	797	28	4	928	4	NSUN5	7	72719078	Missense_Mutation	SNP	C	TCGA-BH-A1FH-01A-12D-A13L-09		72719078	86419585	1	52962										
GATA3	0	genome.wustl.edu	37	chr10	8115843	8115844	+	Frame_Shift_Ins	INS	-	-	C													0.25	1	0.876864048099363	1.41666666666667	NA	1.41666666666667	1	1	0	gtttaacccggccgccctctINSccagacacatgtcctccctg							TCGA-BH-A1FH-01A-12D-A13L-09	TCGA-BH-A1FH-11B-42D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd6bd486-6371-4892-863e-64838fcea624	0eff2896-73b8-4a34-90dd-96351fcb0eb2	10	8115843	8115844	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1192_1193	p.R399fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	70	0	0	111	17	13.28	-	-	-	C	8115844	-	C	8115843	7	5	602	1	0	1	1	0	0	0	0	0	6305	1551	54	0	1210	0	GATA3	10	8115843	Frame_Shift_Ins	INS	-	TCGA-BH-A1FH-01A-12D-A13L-09		8115843	127418904	2	52963										
PLCB4	0	genome.wustl.edu	37	chr20	9353021	9353021	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	1	0.876864048099363	1.41666666666667	NA	1.41666666666667	1	1	0	acacaaaagatttgtcctcgGacagatatagaagatctttt	7	7	1	4			TCGA-BH-A1FH-01A-12D-A13L-09	TCGA-BH-A1FH-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd6bd486-6371-4892-863e-64838fcea624	0eff2896-73b8-4a34-90dd-96351fcb0eb2	20	9353021	9353021	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	silent	c.657	p.R219	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	49	0	0	84	33	28.21	-	-	-	A	9353021	G	A	9353021	2	1	602	1	0	0	0	0	0	0	0	1	12104	1161	41	2		2	PLCB4	20	9353021	Silent	SNP	G	TCGA-BH-A1FH-01A-12D-A13L-09		9353021	53672499	3	52964										
BTBD3	0	genome.wustl.edu	37	chr20	11904305	11904305	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	1	0.876864048099363	1.41666666666667	NA	1.41666666666667	1	1	0	cagatccctgaacttatattCtatgcttgaaaactcacttc	4	11	2	3			TCGA-BH-A1FH-01A-12D-A13L-09	TCGA-BH-A1FH-11B-42D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd6bd486-6371-4892-863e-64838fcea624	0eff2896-73b8-4a34-90dd-96351fcb0eb2	20	11904305	11904305	C	T	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	silent	c.1560	p.F520	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	44	0	0	148	21	12.43	-	-	-	T	11904305	C	T	11904305	2	4	602	1	0	0	0	0	0	0	0	1	1553	912	32	2		2	BTBD3	20	11904305	Silent	SNP	C	TCGA-BH-A1FH-01A-12D-A13L-09	2551284	11904305	51121215	4	52965										
RPTN	0	genome.wustl.edu	37	chr1	152127447	152127447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tctatcccaagtttgatggcCctgctcttcctctgcccagt	7	15	3	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	152127447	152127447	C	T	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.2128	p.G710S	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	95	0	0	884	233	20.82	-	-	-	T	152127447	C	T	152127447	3	4	603	1	0	0	0	0	1	0	0	0	13750	623	22	4	230	4	RPTN	1	152127447	Missense_Mutation	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09		152127447	97123174	1	52966										
RGS16	0	genome.wustl.edu	37	chr1	182569531	182569531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	aggcgacttcaggaagcgtgGgtaggagtccttctccatca	13	10	3	0			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	182569531	182569531	G	A	SNP	RGS16	ENST00000367558	human	ensembl	69_37n	-1	known	missense	c.505	p.P169S	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS16	HGNC	ENSG00000143333	32	0	0	198	50	20.16	-	-	-	A	182569531	G	A	182569531	3	1	603	1	0	0	0	0	1	0	0	0	13382	1232	43	4	107	4	RGS16	1	182569531	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	30442084	182569531	66681090	2	52967										
BIRC6	0	genome.wustl.edu	37	chr2	32640667	32640669	+	In_Frame_Del	DEL	AAT	AAT	-													0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tagaggccttgaataatttaAataaattaaactctgcacta							TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	2	32640667	32640669	AAT	-	DEL	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	in_frame_del	c.2308_2310	p.N770in_frame_del	1.000:1.000:1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	33	0	0	11	8	42.11	-	-	-	-	32640669	AAT	-	32640667	7	5	603	1	0	1	0	1	0	0	0	0	1443	14	1	0	2346	0	BIRC6	2	32640667	In_Frame_Del	DEL	AAT	TCGA-BH-A1FJ-01A-11D-A13L-09		32640667	210558706	3	52968										
FAM136A	0	genome.wustl.edu	37	chr2	70527971	70527971	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tctgtctaggatatttctcaCctggaacttctccagctcac	6	13	5	0			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	2	70527971	70527971	C	T	SNP	FAM136A	ENST00000037869	human	ensembl	69_37n	-1	known	splice_site	c.228+1	e2+1	1.000	-	-	-	no_errors	FAM136A	HGNC	ENSG00000035141	17	0	0	42	9	17.65	-	-	-	T	70527971	C	T	70527971	5	4	603	1	0	0	0	0	0	0	1	0	5490	521	18	4	195	4	FAM136A	2	70527971	Splice_Site	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09	37887304	70527971	172671402	4	52969										
GNAI2	0	genome.wustl.edu	37	chr3	50289959	50289959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tgcagatcgactttgccgacCcctccagagcggtatgtgcc	11	14	0	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	50289959	50289959	C	T	SNP	GNAI2	ENST00000313601	human	ensembl	69_37n	1	known	missense	c.292	p.P98S	0.962	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_GproteinA	-	no_errors	GNAI2	HGNC	ENSG00000114353	17	0	0	26	17	39.53	-	-	-	T	50289959	C	T	50289959	3	4	603	1	0	0	0	0	1	0	0	0	6557	623	22	4	313	4	GNAI2	3	50289959	Missense_Mutation	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09		50289959	147732471	5	52970										
DNAH12	0	genome.wustl.edu	37	chr3	57443861	57443861	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	cgtttcttttcaagatatgcGttaagacctttcataatttt	5	7	3	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	57443861	57443861	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	silent	c.2949	p.N983	0.999	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	64	0	0	56	44	43.56	-	-	-	A	57443861	G	A	57443861	2	1	603	1	0	0	0	0	0	0	0	1	4636	1136	40	1		1	DNAH12	3	57443861	Silent	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	7153902	57443861	140578569	6	52971										
CADM2	0	genome.wustl.edu	37	chr3	86115884	86115884	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tgatacagccattatcaatgCtgaaggcagccaagtcaatg	9	9	2	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	86115884	86115884	C	A	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.1265	p.A422D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	54	0	0	40	34	45.95	-	-	-	A	86115884	C	A	86115884	3	1	603	1	0	0	0	0	1	0	0	0	2592	797	28	4	1368	4	CADM2	3	86115884	Missense_Mutation	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09	28672023	86115884	111906546	7	52972										
KIAA1257	0	genome.wustl.edu	37	chr3	128706484	128706484	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ttatgaaaagctcccacgtcGtctgtgaagccggcagtctt	10	11	2	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	128706484	128706484	G	A	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	silent	c.642	p.D214	0.001	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	66	0	0	111	30	21.28	-	-	-	A	128706484	G	A	128706484	2	1	603	1	0	0	0	0	0	0	0	1	8270	1136	40	1		1	KIAA1257	3	128706484	Silent	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	42590600	128706484	69315946	8	52973										
TTC23L	0	genome.wustl.edu	37	chr5	34863073	34863073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ttgacctggaaggcaaatacGacctcaaataaggagaaaga	10	7	1	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	5	34863073	34863073	G	A	SNP	TTC23L	ENST00000508722	human	ensembl	69_37n	1	known	missense	c.139	p.D47N	0.000	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	40	0	0	64	41	39.05	-	-	-	A	34863073	G	A	34863073	3	1	603	1	0	0	0	0	1	0	0	0	16788	1045	37	1	464	1	TTC23L	5	34863073	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09		34863073	146052187	9	52974										
HLA-C	0	genome.wustl.edu	37	chr6	31238992	31238992	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	atctgagccgcggtgtccgcGgcggtccaggagcgcaggtc	17	13	1	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	6	31238992	31238992	G	C	SNP	HLA-C	ENST00000415537	human	ensembl	69_37n	-1	novel	missense	c.475	p.R159G	0.021	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-C	HGNC	ENSG00000204525	8	0	0	9	7	43.75	-	-	-	C	31238992	G	C	31238992	3	2	603	1	0	0	0	0	1	0	0	0	7248	1103	39	3	647	3	HLA-C	6	31238992	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09		31238992	139876075	10	52975										
DST	0	genome.wustl.edu	37	chr6	56333793	56333793	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tttatacctgatttcccaggAagaactgataaaaatgaaaa	6	6	0	4			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	6	56333793	56333793	A	T	SNP	DST	ENST00000244364	human	ensembl	69_37n	-1	known	missense	c.14687	p.F4896Y	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	45	0	0	43	7	14	-	-	-	T	56333793	A	T	56333793	3	4	603	1	0	0	0	0	1	0	0	0	4818	246	9	5	852	5	DST	6	56333793	Missense_Mutation	SNP	A	TCGA-BH-A1FJ-01A-11D-A13L-09	25094801	56333793	114781274	11	52976										
CNTNAP2	0	genome.wustl.edu	37	chr7	147183037	147183037	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tctctgacagatgtgtgcccAatcactgtgagcatggtgga	12	9	2	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	7	147183037	147183037	A	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.1681	p.N561H	1.000	pfam_EGF-like_dom,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	45	0	0	76	64	45.71	-	-	-	C	147183037	A	C	147183037	3	2	603	1	0	0	0	0	1	0	0	0	3677	130	5	5	1723	5	CNTNAP2	7	147183037	Missense_Mutation	SNP	A	TCGA-BH-A1FJ-01A-11D-A13L-09		147183037	11955626	12	52977										
CA1	0	genome.wustl.edu	37	chr8	86242048	86242048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	gaaggagagtagaggggtcaAaatttgtgaatggggctcgt	17	3	1	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	8	86242048	86242048	A	C	SNP	CA1	ENST00000256119	human	ensembl	69_37n	-1	known	missense	c.539	p.F180C	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA1	HGNC	ENSG00000133742	40	0	0	49	28	36.36	-	-	-	C	86242048	A	C	86242048	3	2	603	1	0	0	0	0	1	0	0	0	2535	14	1	5	254	5	CA1	8	86242048	Missense_Mutation	SNP	A	TCGA-BH-A1FJ-01A-11D-A13L-09		86242048	60121974	13	52978										
PNPLA7	0	genome.wustl.edu	37	chr9	140356760	140356760	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	cacacgtaggccaggcgcgtCtgaatctctgccatgttcaa	10	13	3	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	9	140356760	140356760	C	T	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	silent	c.3516	p.Q1172	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	11	0	0	20	6	23.08	-	-	-	T	140356760	C	T	140356760	2	4	603	1	0	0	0	0	0	0	0	1	12244	912	32	2		2	PNPLA7	9	140356760	Silent	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09		140356760	856671	14	52979										
MUC15	0	genome.wustl.edu	37	chr11	26586728	26586728	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ttacctttttggggatctgaCgtatttggaaagagttttga	11	4	1	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	11	26586728	26586728	C	T	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	silent	c.759	p.T253	0.273	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	72	0	0	154	34	18.09	-	-	-	T	26586728	C	T	26586728	2	4	603	1	0	0	0	0	0	0	0	1	10044	523	19	1		1	MUC15	11	26586728	Silent	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09		26586728	108419788	15	52980										
CDKN1B	0	genome.wustl.edu	37	chr12	12870935	12870936	+	Frame_Shift_Ins	INS	-	-	GC													0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	actgcagagacatggaagagINSgcgagccagcgcaagtggaa							TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	12	12870935	12870936	-	GC	INS	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	frame_shift_ins	c.162_163	p.S55fs	0.982:0.980	pfam_CDI	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	25	0	0	34	23	40.35	-	-	-	GC	12870936	-	GC	12870935	7	5	603	1	0	1	1	0	0	0	0	0	3188	991	35	0	164	0	CDKN1B	12	12870935	Frame_Shift_Ins	INS	-	TCGA-BH-A1FJ-01A-11D-A13L-09		12870935	120980960	16	52981										
ACSS3	0	genome.wustl.edu	37	chr12	81627233	81627233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ttgcaggtcacagaatttctGcaggcgccattgaagaggta	12	8	2	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	12	81627233	81627233	G	T	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	1	known	missense	c.1702	p.A568S	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	53	0	0	96	81	45.76	-	-	-	T	81627233	G	T	81627233	3	4	603	1	0	0	0	0	1	0	0	0	190	1319	46	4	1752	4	ACSS3	12	81627233	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	68756298	81627233	52224662	17	52982										
ZSCAN29	0	genome.wustl.edu	37	chr15	43658586	43658586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ggcaggtctcaggtgggtggCcgctcttgactttccgatag	15	10	2	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	15	43658586	43658586	C	T	SNP	ZSCAN29	ENST00000396976	human	ensembl	69_37n	-1	known	missense	c.944	p.G315D	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265	42	0	0	47	39	45.35	-	-	-	T	43658586	C	T	43658586	3	4	603	1	0	0	0	0	1	0	0	0	18327	739	26	4	1626	4	ZSCAN29	15	43658586	Missense_Mutation	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09		43658586	58872806	18	52983										
CDK12	0	genome.wustl.edu	37	chr17	37618580	37618580	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	attccgacaccttctccgatGacatggccttcaaactagac	6	14	2	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	17	37618580	37618580	G	A	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.256	p.D86N	0.992	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	15	0	0	30	24	44.44	-	-	-	A	37618580	G	A	37618580	3	1	603	1	0	0	0	0	1	0	0	0	3157	1290	45	2	258	2	CDK12	17	37618580	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09		37618580	43576630	19	52984										
MPO	0	genome.wustl.edu	37	chr17	56356745	56356745	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tcatactccgccggcagccaGcgcacaaaggcacggttgga	12	14	1	0			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	17	56356745	56356745	G	A	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	silent	c.687	p.R229	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	23	0	0	13	11	45.83	-	-	-	A	56356745	G	A	56356745	2	1	603	1	0	0	0	0	0	0	0	1	9804	958	34	4		4	MPO	17	56356745	Silent	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	18738165	56356745	24838465	20	52985										
SAFB	0	genome.wustl.edu	37	chr19	5641894	5641894	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	aacctccaggagtccctgtcGgatagtagagagctagtcga	12	10	0	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	5641894	5641894	G	A	SNP	SAFB	ENST00000588852	human	ensembl	69_37n	1	known	silent	c.483	p.S161	0.947	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	30	0	0	36	18	33.33	-	-	-	A	5641894	G	A	5641894	2	1	603	1	0	0	0	0	0	0	0	1	13892	1103	39	1		1	SAFB	19	5641894	Silent	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09		5641894	53487089	21	52986										
FUT6	0	genome.wustl.edu	37	chr19	5832191	5832191	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	catgctgaaccagatccatcGctgcccctgccgcctcgggg	11	17	0	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	5832191	5832191	G	A	SNP	FUT6	ENST00000592563	human	ensembl	69_37n	-1	known	nonsense	c.388	p.R130*	0.961	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT6	HGNC	ENSG00000156413	10	0	0	28	19	40.43	-	-	-	A	5832191	G	A	5832191	4	1	603	1	0	0	0	0	0	1	0	0	6157	1095	38	1	695	1	FUT6	19	5832191	Nonsense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	190297	5832191	53296792	22	52987										
MUC16	0	genome.wustl.edu	37	chr19	9000557	9000557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ttgtgaatagcaccaggagaGggctggcggctatagtgaag	16	6	0	3			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	9000557	9000557	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.40427	p.P13476L	0.001	smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	59	0	0	109	87	44.16	-	-	-	A	9000557	G	A	9000557	3	1	603	1	0	0	0	0	1	0	0	0	10045	1000	35	4	3220	4	MUC16	19	9000557	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	3168366	9000557	50128426	23	52988										
PSG7	0	genome.wustl.edu	37	chr19	43430738	43430738	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tttaccctgggactgaccggGaggctctgaccatttagcca	11	12	1	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	43430738	43430738	G	T	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	silent	c.840	p.L280	0.019	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	78	0	0	217	62	22.22	-	-	-	T	43430738	G	T	43430738	2	4	603	1	0	0	0	0	0	0	0	1	12740	1161	41	2		2	PSG7	19	43430738	Silent	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	34430181	43430738	15698245	24	52989										
AP2A1	0	genome.wustl.edu	37	chr19	50302103	50302103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tggtggaatgtctggagactGtgctcaacaaggcccaggag	15	8	2	1			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	50302103	50302103	G	T	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	missense	c.859	p.V287L	0.991	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	27	0	0	22	21	48.84	-	-	-	T	50302103	G	T	50302103	3	4	603	1	0	0	0	0	1	0	0	0	740	1377	48	4	889	4	AP2A1	19	50302103	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09	6871365	50302103	8826880	25	52990										
SLC25A14	0	genome.wustl.edu	37	chrX	129474313	129474313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	tgaagtttgcaacggcggccGtgattgtaagcggagtaagc	15	7	0	2			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	X	129474313	129474313	G	A	SNP	SLC25A14	ENST00000339231	human	ensembl	69_37n	1	known	missense	c.61	p.V21M	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A14	HGNC	ENSG00000102078	58	0	0	67	15	18.29	-	-	-	A	129474313	G	A	129474313	3	1	603	1	0	0	0	0	1	0	0	0	14565	1145	40	1	63	1	SLC25A14	23	129474313	Missense_Mutation	SNP	G	TCGA-BH-A1FJ-01A-11D-A13L-09		129474313	25796247	26	52991										
SPRY3	0	genome.wustl.edu	37	chrX	155003723	155003723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.99043758096535	0.714859437751004	0	0.756909992912828	0.333333333333333	0.930327025915261	0	ccatgcctacttctctccccCgcagtctcagccagtgccat	6	19	2	0			TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	X	155003723	155003723	C	T	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	1	known	missense	c.190	p.R64C	0.997	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	67	0	0	170	149	46.71	-	-	-	T	155003723	C	T	155003723	3	4	603	1	0	0	0	0	1	0	0	0	15198	652	23	1	192	1	SPRY3	23	155003723	Missense_Mutation	SNP	C	TCGA-BH-A1FJ-01A-11D-A13L-09	25529410	155003723	266837	27	52992										
CASZ1	0	genome.wustl.edu	37	chr1	10714015	10714015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	gcggcagccccagcgcgcccGaggagcggatgtgccggcgc	18	16	0	0			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	10714015	10714015	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.2099	p.S700L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	16	0	0	22	16	42.11	-	-	-	A	10714015	G	A	10714015	3	1	604	1	0	0	0	0	1	0	0	0	2710	1059	37	1	3228	1	CASZ1	1	10714015	Missense_Mutation	SNP	G	TCGA-BH-A1FL-01A-11D-A13L-09		10714015	238536606	1	52993										
GON4L	0	genome.wustl.edu	37	chr1	155734834	155734834	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	cagattcctcagaagctgatGacatttcatcttcctcatct	5	12	5	4			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	155734834	155734834	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.4430	p.S1477L	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	57	0	0	61	17	21.79	-	-	-	A	155734834	G	A	155734834	3	1	604	1	0	0	0	0	1	0	0	0	6621	1294	45	2	2457	2	GON4L	1	155734834	Missense_Mutation	SNP	G	TCGA-BH-A1FL-01A-11D-A13L-09	145020819	155734834	93515787	2	52994										
C2orf18	0	genome.wustl.edu	37	chr2	26997949	26997949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	gggagaattctcctgcctggCtgccttctacctcctccgat	9	15	2	1			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	26997949	26997949	C	T	SNP	C2orf18	ENST00000344420	human	ensembl	69_37n	1	known	missense	c.188	p.A63V	0.999	pirsf_UCP036436	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436	-	no_errors	C2orf18	HGNC	ENSG00000213699	37	0	0	36	4	10	-	-	-	T	26997949	C	T	26997949	3	4	604	1	0	0	0	0	1	0	0	0	2178	797	28	4	198	4	C2orf18	2	26997949	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09		26997949	216201424	3	52995										
PPP3R1	0	genome.wustl.edu	37	chr2	68413703	68413703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	gtgtatctttcagattgttcCccaccatcatcttcaatacc	4	13	5	1			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	68413703	68413703	C	T	SNP	PPP3R1	ENST00000406334	human	ensembl	69_37n	-1	known	missense	c.332	p.G111E	1.000	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	-	no_errors	PPP3R1	HGNC	ENSG00000221823	125	1	0.79	66	55	45.45	-	-	-	T	68413703	C	T	68413703	3	4	604	1	0	0	0	0	1	0	0	0	12477	623	22	4	158	4	PPP3R1	2	68413703	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09	41415754	68413703	174785670	4	52996										
SETD5	0	genome.wustl.edu	37	chr3	9495453	9495453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	aacaagccttagaagaagggAtgactcaaacatcatctgta	8	8	3	3			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	9495453	9495453	A	G	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	1	known	missense	c.2377	p.M793V	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	48	0	0	40	15	27.27	-	-	-	G	9495453	A	G	9495453	3	3	604	1	0	0	0	0	1	0	0	0	14222	333	12	5	2435	5	SETD5	3	9495453	Missense_Mutation	SNP	A	TCGA-BH-A1FL-01A-11D-A13L-09		9495453	188526977	5	52997										
KCNQ5	0	genome.wustl.edu	37	chr6	73787578	73787578	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	aggatgccaataaagagtttTctacatatgcagatgctctc	8	8	2	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	73787578	73787578	T	C	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.886	p.S296P	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	129	1	0.77	111	29	20.71	-	-	-	C	73787578	T	C	73787578	3	2	604	1	0	0	0	0	1	0	0	0	8140	1783	62	5	904	5	KCNQ5	6	73787578	Missense_Mutation	SNP	T	TCGA-BH-A1FL-01A-11D-A13L-09		73787578	97327489	6	52998										
EML3	0	genome.wustl.edu	37	chr11	62378386	62378386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	gaccgcactaacaggttggcGgaggagattgccttcctgga	14	10	0	1			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	62378386	62378386	G	A	SNP	EML3	ENST00000494448	human	ensembl	69_37n	-1	known	missense	c.406	p.R136C	0.252	NULL	NULL	-	no_errors	EML3	HGNC	ENSG00000149499	25	0	0	13	4	23.53	-	-	-	A	62378386	G	A	62378386	3	1	604	1	0	0	0	0	1	0	0	0	5135	1103	39	1	2235	1	EML3	11	62378386	Missense_Mutation	SNP	G	TCGA-BH-A1FL-01A-11D-A13L-09		62378386	72628130	7	52999										
CARNS1	0	genome.wustl.edu	37	chr11	67186488	67186488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	ttcggctgagctggcccggcTgctggaggaccggctgctga	17	12	0	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	67186488	67186488	T	C	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	missense	c.626	p.L209P	1.000	NULL	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	11	0	0	10	5	33.33	-	-	-	C	67186488	T	C	67186488	3	2	604	1	0	0	0	0	1	0	0	0	2681	1580	55	5	640	5	CARNS1	11	67186488	Missense_Mutation	SNP	T	TCGA-BH-A1FL-01A-11D-A13L-09	4808102	67186488	67820028	8	53000										
BCL9L	0	genome.wustl.edu	37	chr11	118779066	118779066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	ccggtccctcttcaccttgcCcttgagcgagctgaaagggg	12	14	2	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	118779066	118779066	C	T	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.325	p.G109S	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	31	0	0	20	14	41.18	-	-	-	T	118779066	C	T	118779066	3	4	604	1	0	0	0	0	1	0	0	0	1386	623	22	4	4202	4	BCL9L	11	118779066	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09	51592578	118779066	16227450	9	53001										
FOXA1	0	genome.wustl.edu	37	chr14	38061213	38061213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	agcgcttctggcggcgcaagTagcagccgttctcgaacatg	13	12	2	0			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	14	38061213	38061213	T	G	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.776	p.Y259S	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	8	0	0	18	7	28	-	-	-	G	38061213	T	G	38061213	3	3	604	1	0	0	0	0	1	0	0	0	6035	1638	57	5	646	5	FOXA1	14	38061213	Missense_Mutation	SNP	T	TCGA-BH-A1FL-01A-11D-A13L-09		38061213	69288327	10	53002										
INO80	0	genome.wustl.edu	37	chr15	41388029	41388029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	tgctccagaagtttcaccaaGcaatgaatttggaggttctt	9	8	2	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	15	41388029	41388029	G	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.241	p.L81F	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	59	0	0	32	15	31.91	-	-	-	A	41388029	G	A	41388029	3	1	604	1	0	0	0	0	1	0	0	0	7800	971	34	4	4565	4	INO80	15	41388029	Missense_Mutation	SNP	G	TCGA-BH-A1FL-01A-11D-A13L-09		41388029	61143363	11	53003										
CDH8	0	genome.wustl.edu	37	chr16	62055218	62055218	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	acttgagactgattcatcggAgccatgtaaatgcaaggggg	13	7	1	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	62055218	62055218	A	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	silent	c.90	p.A30	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	63	0	0	8	34	80.95	-	-	-	G	62055218	A	G	62055218	2	3	604	1	0	0	0	0	0	0	0	1	3145	291	11	5		5	CDH8	16	62055218	Silent	SNP	A	TCGA-BH-A1FL-01A-11D-A13L-09		62055218	28299535	12	53004										
CBFB	0	genome.wustl.edu	37	chr16	67100608	67100608	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	tatttgaaggctcccatgatTctgaatggagtctgtgttat	10	6	2	3			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	67100608	67100608	T	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.306	p.I102M	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	131	1	0.76	20	60	75	-	-	-	G	67100608	T	G	67100608	3	3	604	1	0	0	0	0	1	0	0	0	2724	1771	62	5	320	5	CBFB	16	67100608	Missense_Mutation	SNP	T	TCGA-BH-A1FL-01A-11D-A13L-09	5045390	67100608	23254145	13	53005										
SERPINF2	0	genome.wustl.edu	37	chr17	1650702	1650702	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	ggaagatgacctggcaaacaTcaaccaatgggtgaaggagg	14	7	1	3			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	1650702	1650702	T	C	SNP	SERPINF2	ENST00000324015	human	ensembl	69_37n	1	known	missense	c.611	p.I204T	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711	31	0	0	13	9	40.91	-	-	-	C	1650702	T	C	1650702	3	2	604	1	0	0	0	0	1	0	0	0	14203	1435	50	5	643	5	SERPINF2	17	1650702	Missense_Mutation	SNP	T	TCGA-BH-A1FL-01A-11D-A13L-09		1650702	79544508	14	53006										
IKZF3	0	genome.wustl.edu	37	chr17	37988354	37988354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	gaaagacctgatgttacctgCgggcacagactgctcctgag	12	11	0	4			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	37988354	37988354	C	A	SNP	IKZF3	ENST00000346872	human	ensembl	69_37n	-1	known	missense	c.58	p.A20S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405	94	0	0	60	40	39.6	-	-	-	A	37988354	C	A	37988354	3	1	604	1	0	0	0	0	1	0	0	0	7670	768	27	3	1499	3	IKZF3	17	37988354	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09	36337652	37988354	43206856	15	53007										
TRIP10	0	genome.wustl.edu	37	chr19	6743794	6743794	+	Frame_Shift_Del	DEL	T	T	-													0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	atgcggctcaactgcagcgcTtcaaccgagaccaagcccac							TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	6743794	6743794	T	-	DEL	TRIP10	ENST00000313244	human	ensembl	69_37n	1	known	frame_shift_del	c.589	p.F197fs	1.000	NULL	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	81	0	0	43	23	34.85	-	-	-	-	6743794	T	-	6743794	7	5	604	1	0	1	0	1	0	0	0	0	16650	1609	56	0	615	0	TRIP10	19	6743794	Frame_Shift_Del	DEL	T	TCGA-BH-A1FL-01A-11D-A13L-09		6743794	52385189	16	53008										
LILRB4	0	genome.wustl.edu	37	chr19	55174519	55174519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	tcacggctctgctctgcctcGgtgagatttaaagaggggga	14	9	3	2			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	55174519	55174519	G	A	SNP	LILRB4	ENST00000270452	human	ensembl	69_37n	1	known	missense	c.34	p.G12R	0.682	NULL	pfam_Immunoglobulin,pfscan_Ig-like	-	no_errors	LILRB4	HGNC	ENSG00000186818	22	0	0	14	9	39.13	-	-	-	A	55174519	G	A	55174519	3	1	604	1	0	0	0	0	1	0	0	0	8848	1130	39	1	36	1	LILRB4	19	55174519	Missense_Mutation	SNP	G	TCGA-BH-A1FL-01A-11D-A13L-09	48430725	55174519	3954464	17	53009										
ADNP	0	genome.wustl.edu	37	chr20	49509507	49509508	+	Frame_Shift_Ins	INS	-	-	GTAA													0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	ggaggattattttgggcatgINSgtaagcaacagattcagctg							TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	20	49509507	49509508	-	GTAA	INS	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1744_1743	p.H581fs	1.000:0.989	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	83	0	0	49	20	28.99	-	-	-	GTAA	49509508	-	GTAA	49509507	7	5	604	1	0	1	1	0	0	0	0	0	323	1348	47	0	1568	0	ADNP	20	49509507	Frame_Shift_Ins	INS	-	TCGA-BH-A1FL-01A-11D-A13L-09		49509507	13516013	18	53010										
DMD	0	genome.wustl.edu	37	chrX	31200940	31200940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	agcagccactctgtgcaggaCgggcagccacaccatggact	12	14	1	0			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	31200940	31200940	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9889	p.V3297I	1.000	pfam_EF-hand_dom_typ2,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	54	0	0	35	15	30	-	-	-	T	31200940	C	T	31200940	3	4	604	1	0	0	0	0	1	0	0	0	4616	536	19	1	1306	1	DMD	23	31200940	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09		31200940	124069620	19	53011										
MAGEA4	0	genome.wustl.edu	37	chrX	151092941	151092941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.621875	NA	0.621875	1	1	0	tacccggcagtaatcctgcgCgctatgagttcctgtggggt	13	11	0	1			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	151092941	151092941	C	T	SNP	MAGEA4	ENST00000276344	human	ensembl	69_37n	1	known	missense	c.805	p.R269C	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	50	0	0	21	29	58	-	-	-	T	151092941	C	T	151092941	3	4	604	1	0	0	0	0	1	0	0	0	9237	768	27	1	807	1	MAGEA4	23	151092941	Missense_Mutation	SNP	C	TCGA-BH-A1FL-01A-11D-A13L-09	119892001	151092941	4177619	20	53012										
ABCA4	0	genome.wustl.edu	37	chr1	94520718	94520718	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	taagccatagacagcagcatCaaggagcatcatctgcatgg	10	10	3	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	94520718	94520718	C	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.2536	p.D846Y	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	76	0	0	45	20	30.77	-	-	-	A	94520718	C	A	94520718	3	1	605	1	0	0	0	0	1	0	0	0	34	826	29	2	4425	2	ABCA4	1	94520718	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		94520718	154729903	1	53013										
OR6K2	0	genome.wustl.edu	37	chr1	158669983	158669983	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ggcaatctcaggaaggggtgTgataaagccacaaacacagc	12	9	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	158669983	158669983	T	C	SNP	OR6K2	ENST00000359610	human	ensembl	69_37n	-1	known	missense	c.460	p.T154A	0.012	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6K2	HGNC	ENSG00000196171	80	0	0	54	35	39.33	-	-	-	C	158669983	T	C	158669983	3	2	605	1	0	0	0	0	1	0	0	0	11275	1696	59	5	518	5	OR6K2	1	158669983	Missense_Mutation	SNP	T	TCGA-BH-A1FM-01A-11D-A13L-09	64149265	158669983	90580638	2	53014										
NID1	0	genome.wustl.edu	37	chr1	236143802	236143802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	cagctttccatcacctgcatCcacccagcagagctgagatg	8	15	1	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	236143802	236143802	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.3379	p.D1127N	1.000	smart_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	72	0	0	44	20	31.25	-	-	-	T	236143802	C	T	236143802	3	4	605	1	0	0	0	0	1	0	0	0	10486	855	30	2	380	2	NID1	1	236143802	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	77473819	236143802	13106819	3	53015										
FOXP1	0	genome.wustl.edu	37	chr3	71161786	71161786	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	agctgtcttgccacctgaagTgcctggaaggaaaaacaaga	11	9	1	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	3	71161786	71161786	T	C	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	silent	c.183	p.A61	0.460	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	135	0	0	59	31	33.7	-	-	-	C	71161786	T	C	71161786	2	2	605	1	0	0	0	0	0	0	0	1	6074	1683	59	5		5	FOXP1	3	71161786	Silent	SNP	T	TCGA-BH-A1FM-01A-11D-A13L-09		71161786	126860644	4	53016										
KCTD8	0	genome.wustl.edu	37	chr4	44177076	44177077	+	Frame_Shift_Ins	INS	-	-	A													0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	cgatccaatgttaaagtgttINSaggttggtgagctgttgcct							TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	44177076	44177077	-	A	INS	KCTD8	ENST00000360029	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1153_1152	p.N384fs	0.980:0.743	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783	142	1	0.7	162	28	14.74	-	-	-	A	44177077	-	A	44177076	7	5	605	1	0	1	1	0	0	0	0	0	8169	1754	61	0	272	0	KCTD8	4	44177076	Frame_Shift_Ins	INS	-	TCGA-BH-A1FM-01A-11D-A13L-09		44177076	146977200	5	53017										
FAT4	0	genome.wustl.edu	37	chr4	126328230	126328230	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	atatcactgtcagtgatgtgAatgaccatacacccaaattt	6	9	2	3			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	126328230	126328230	A	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.5503	p.N1835H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	45	0	0	59	7	10.61	-	-	-	C	126328230	A	C	126328230	3	2	605	1	0	0	0	0	1	0	0	0	5738	246	9	5	5513	5	FAT4	4	126328230	Missense_Mutation	SNP	A	TCGA-BH-A1FM-01A-11D-A13L-09	82151154	126328230	64826046	6	53018										
HEATR7B2	0	genome.wustl.edu	37	chr5	41049479	41049479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ctgatgatactaaacaggggCtccagagcttctgtgtattc	10	9	1	3			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	41049479	41049479	C	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1404	p.E468D	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	62	0	0	65	24	26.97	-	-	-	A	41049479	C	A	41049479	3	1	605	1	0	0	0	0	1	0	0	0	7086	796	28	4	3469	4	HEATR7B2	5	41049479	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		41049479	139865781	7	53019										
F2R	0	genome.wustl.edu	37	chr5	76028288	76028288	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ccatcaataaaagcagtcctCttcaaaaacaacttcctgca	3	13	3	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	76028288	76028288	C	G	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	missense	c.238	p.L80V	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	110	0	0	112	33	22.76	-	-	-	G	76028288	C	G	76028288	3	3	605	1	0	0	0	0	1	0	0	0	5380	913	32	2	244	2	F2R	5	76028288	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	34978809	76028288	104886972	8	53020										
ARSK	0	genome.wustl.edu	37	chr5	94936385	94936385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ctgaagtccacatggccagtGgggtaagcatgtgaattttg	13	7	0	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	94936385	94936385	G	A	SNP	ARSK	ENST00000504873	human	ensembl	69_37n	1	known	missense	c.1153	p.G385R	0.001	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	21	0	0	21	10	32.26	-	-	-	A	94936385	G	A	94936385	3	1	605	1	0	0	0	0	1	0	0	0	1000	1363	47	4		4	ARSK	5	94936385	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09	18908097	94936385	85978875	9	53021										
KIF4B	0	genome.wustl.edu	37	chr5	154395548	154395548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	aacggaagaggcagcagctgCcaacaagcgactcaaggatg	13	10	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	154395548	154395548	C	T	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.2129	p.A710V	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	101	0	0	121	70	36.65	-	-	-	T	154395548	C	T	154395548	3	4	605	1	0	0	0	0	1	0	0	0	8356	739	26	4	2131	4	KIF4B	5	154395548	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	59459163	154395548	26519712	10	53022										
EYS	0	genome.wustl.edu	37	chr6	65767562	65767562	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ccaggttggtcaatgcaggtGgctccatttttgcagggatg	14	8	1	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	6	65767562	65767562	G	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	silent	c.2082	p.A694	0.853	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	142	0	0	92	14	13.21	-	-	-	T	65767562	G	T	65767562	2	4	605	1	0	0	0	0	0	0	0	1	5369	1335	47	4		4	EYS	6	65767562	Silent	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		65767562	105347505	11	53023										
HECW1	0	genome.wustl.edu	37	chr7	43506115	43506115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	cttgctgctgcagtccccagCggtcaagttcatcaccaacc	8	16	3	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	43506115	43506115	C	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.2861	p.A954V	0.996	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	83	0	0	60	74	55.22	-	-	-	T	43506115	C	T	43506115	3	4	605	1	0	0	0	0	1	0	0	0	7093	768	27	1	2911	1	HECW1	7	43506115	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		43506115	115632548	12	53024										
SEPT14	0	genome.wustl.edu	37	chr7	55914275	55914275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tcaccaactgattgggcaaaCattcaaaaccaaaatgtcca	5	11	2	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	55914275	55914275	C	T	SNP	SEPT14	ENST00000388975	human	ensembl	69_37n	-1	known	missense	c.110	p.C37Y	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	93	0	0	50	31	38.27	-	-	-	T	55914275	C	T	55914275	3	4	605	1	0	0	0	0	1	0	0	0	14151	478	17	4	1220	4	SEPT14	7	55914275	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	12408160	55914275	103224388	13	53025										
SEMA3C	0	genome.wustl.edu	37	chr7	80418832	80418834	+	In_Frame_Del	DEL	CTC	CTC	-													0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tcgcatattgggtgtaaatgCtcctcctggacactagaaag							TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	80418832	80418834	CTC	-	DEL	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	in_frame_del	c.1198_1196	p.G399in_frame_del	1.000:1.000:1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	70	0	0	54	35	38.89	-	-	-	-	80418834	CTC	-	80418832	7	5	605	1	0	1	0	1	0	0	0	0	14114	797	28	0	1139	0	SEMA3C	7	80418832	In_Frame_Del	DEL	CTC	TCGA-BH-A1FM-01A-11D-A13L-09	24504557	80418832	78719831	14	53026										
ZNF804B	0	genome.wustl.edu	37	chr7	88956679	88956679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	gactgaaagaattaaagcaaCgggaatttgctcgaaatgta	10	5	0	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	88956679	88956679	C	T	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.271	p.R91W	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	79	0	0	52	13	20	-	-	-	T	88956679	C	T	88956679	3	4	605	1	0	0	0	0	1	0	0	0	18264	527	19	1	281	1	ZNF804B	7	88956679	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	8537847	88956679	70181984	15	53027										
ADAM18	0	genome.wustl.edu	37	chr8	39495190	39495190	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tggaaacgggactatctcatCctacggccccatgacatagc	9	13	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	8	39495190	39495190	C	T	SNP	ADAM18	ENST00000265707	human	ensembl	69_37n	1	known	silent	c.795	p.I265	0.001	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619	121	0	0	120	30	20	-	-	-	T	39495190	C	T	39495190	2	4	605	1	0	0	0	0	0	0	0	1	239	845	30	2		2	ADAM18	8	39495190	Silent	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		39495190	106868832	16	53028										
OR13C8	0	genome.wustl.edu	37	chr9	107332253	107332253	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ctgagtctaaagcctctgttGattcaggtaatgaagacatc	9	8	3	4			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	107332253	107332253	G	C	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.805	p.D269H	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	74	0	0	32	19	37.25	-	-	-	C	107332253	G	C	107332253	3	2	605	1	0	0	0	0	1	0	0	0	11011	1290	45	2	807	2	OR13C8	9	107332253	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		107332253	33881178	17	53029										
SEC16A	0	genome.wustl.edu	37	chr9	139368956	139368956	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	gacctgctgataaaaacggtCaaggttaggcgccccaggcc	12	12	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139368956	139368956	C	G	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.3112	p.D1038H	0.193	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	24	0	0	19	17	47.22	-	-	-	G	139368956	C	G	139368956	3	3	605	1	0	0	0	0	1	0	0	0	14074	826	29	2	4081	2	SEC16A	9	139368956	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	32036703	139368956	1844475	18	53030			1	91		3	3	481	C		1.468977e-07
SEC16A	0	genome.wustl.edu	37	chr9	139369265	139369265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	actttctggaaccaagttctCtggaactggctgggatggtg	13	8	2	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139369265	139369265	C	G	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.2803	p.E935Q	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	40	0	0	82	44	34.92	-	-	-	G	139369265	C	G	139369265	3	3	605	1	0	0	0	0	1	0	0	0	14074	922	32	2	4390	2	SEC16A	9	139369265	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	309	139369265	1844166	19	53031			1	91		3	3	481	C		1.468977e-07
SEC16A	0	genome.wustl.edu	37	chr9	139369436	139369436	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	agaagtgttctccccagaatCaccaccgagagcccaactgc	8	15	2	3			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139369436	139369436	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.2632	p.D878N	0.536	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	35	0	0	51	23	31.08	-	-	-	T	139369436	C	T	139369436	3	4	605	1	0	0	0	0	1	0	0	0	14074	826	29	2	4561	2	SEC16A	9	139369436	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	171	139369436	1843995	20	53032			1	91		3	3	481	C		1.468977e-07
ANKRD30A	0	genome.wustl.edu	37	chr10	37508553	37508553	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ctgaacacatgtatcaaaacGaacaagataatgtgaacaaa	6	7	1	3			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	10	37508553	37508553	G	T	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	nonsense	c.3745	p.E1249*	0.024	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	80	0	0	85	12	12.37	-	-	-	T	37508553	G	T	37508553	4	4	605	1	0	0	0	0	0	1	0	0	658	1059	37	3	3879	3	ANKRD30A	10	37508553	Nonsense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		37508553	98026194	21	53033										
CCAR1	0	genome.wustl.edu	37	chr10	70507134	70507134	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tcattttttaattgaagaatCagtcgcaaacccagccatta	5	9	2	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	10	70507134	70507134	C	T	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	nonsense	c.637	p.Q213*	1.000	superfamily_NA-bd_OB-fold-like	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	104	1	0.95	16	38	70.37	-	-	-	T	70507134	C	T	70507134	4	4	605	1	0	0	0	0	0	1	0	0	2755	827	29	2	663	2	CCAR1	10	70507134	Nonsense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	32998581	70507134	65027613	22	53034										
EED	0	genome.wustl.edu	37	chr11	85966327	85966327	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tgcaatcttacgtggatgctGatgtatcctttcctgggttt	10	8	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	11	85966327	85966327	G	A	SNP	EED	ENST00000263360	human	ensembl	69_37n	1	known	missense	c.424	p.D142N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	168	1	0.59	131	35	21.08	-	-	-	A	85966327	G	A	85966327	3	1	605	1	0	0	0	0	1	0	0	0	4957	1290	45	2	438	2	EED	11	85966327	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		85966327	49040189	23	53035										
RAB38	0	genome.wustl.edu	37	chr11	87908404	87908404	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tctccgggtcccagtggagcAccttgagcgcgaagtccacg	13	14	1	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	11	87908404	87908404	A	T	SNP	RAB38	ENST00000526372	human	ensembl	69_37n	-1	putative	splice_site	c.197+2	e1+2	1.000	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RAB38	HGNC	ENSG00000123892	45	0	0	12	6	31.58	-	-	-	T	87908404	A	T	87908404	5	4	605	1	0	0	0	0	0	0	1	0	13011	159	6	5	498	5	RAB38	11	87908404	Splice_Site	SNP	A	TCGA-BH-A1FM-01A-11D-A13L-09	1942077	87908404	47098112	24	53036										
STAT2	0	genome.wustl.edu	37	chr12	56737619	56737619	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	catcacttactttccattggCtcagtgttcaaatgtctcag	6	11	4	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	12	56737619	56737619	C	A	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.2403	p.E801D	0.000	pfam_STAT2_C	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	101	1	0.98	74	53	41.41	-	-	-	A	56737619	C	A	56737619	3	1	605	1	0	0	0	0	1	0	0	0	15356	796	28	4	160	4	STAT2	12	56737619	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		56737619	77114276	25	53037										
MLNR	0	genome.wustl.edu	37	chr13	49796405	49796405	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ctcgcaaggaagtccaggccGagaggcttccacagaagcag	13	12	0	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	13	49796405	49796405	G	A	SNP	MLNR	ENST00000218721	human	ensembl	69_37n	1	known	silent	c.1131	p.P377	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GHS1_rcpt	-	no_errors	MLNR	HGNC	ENSG00000102539	54	0	0	49	6	10.91	-	-	-	A	49796405	G	A	49796405	2	1	605	1	0	0	0	0	0	0	0	1	9703	1045	37	1		1	MLNR	13	49796405	Silent	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		49796405	65373473	26	53038										
ZNF598	0	genome.wustl.edu	37	chr16	2048316	2048316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	cgcctggtggctgctggcatCgccatgcgcgagcacctgct	14	15	0	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	2048316	2048316	C	T	SNP	ZNF598	ENST00000431526	human	ensembl	69_37n	-1	known	missense	c.2632	p.D878N	0.998	smart_Znf_C2H2-like	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962	47	0	0	13	8	38.1	-	-	-	T	2048316	C	T	2048316	3	4	605	1	0	0	0	0	1	0	0	0	18124	884	31	1	86	1	ZNF598	16	2048316	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		2048316	88306437	27	53039										
KCNG4	0	genome.wustl.edu	37	chr16	84270709	84270709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	gaagcaccagcttcccggccGccaggaagctcacgatcacc	10	17	2	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	84270709	84270709	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	missense	c.383	p.A128V	0.996	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	44	0	0	14	8	34.78	-	-	-	A	84270709	G	A	84270709	3	1	605	1	0	0	0	0	1	0	0	0	8084	1087	38	1	1182	1	KCNG4	16	84270709	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09	82222393	84270709	6084044	28	53040										
ACBD4	0	genome.wustl.edu	37	chr17	43213950	43213950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tggggccctgcctggtccccCggcccgggttctgggacccc	15	18	1	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	17	43213950	43213950	C	T	SNP	ACBD4	ENST00000431281	human	ensembl	69_37n	1	known	missense	c.172	p.R58W	0.987	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD4	HGNC	ENSG00000181513	41	0	0	5	12	70.59	-	-	-	T	43213950	C	T	43213950	3	4	605	1	0	0	0	0	1	0	0	0	124	643	23	1	178	1	ACBD4	17	43213950	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		43213950	37981260	29	53041										
ZNF700	0	genome.wustl.edu	37	chr19	12060223	12060223	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tcagatctacctcacaccttCgagtgcatggtaggactcat	8	12	4	1			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	12060223	12060223	C	G	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.1384	p.R462G	0.008	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	82	0	0	110	54	32.93	-	-	-	G	12060223	C	G	12060223	3	3	605	1	0	0	0	0	1	0	0	0	18200	876	31	3	1398	3	ZNF700	19	12060223	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		12060223	47068760	30	53042										
CACNA1A	0	genome.wustl.edu	37	chr19	13565940	13565940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ccagccgttcagacatcgggGtcttgtcatcatcaggcaga	11	12	5	2			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	13565940	13565940	G	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.380	p.T127N	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	90	0	0	64	19	22.89	-	-	-	T	13565940	G	T	13565940	3	4	605	1	0	0	0	0	1	0	0	0	2563	1261	44	4	7438	4	CACNA1A	19	13565940	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09	1505717	13565940	45563043	31	53043										
NLRP5	0	genome.wustl.edu	37	chr19	56515226	56515226	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	tacgggctgcaatggtgtctCtatgagctagacaaggaaga	13	7	1	3			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	56515226	56515226	C	G	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	silent	c.207	p.L69	0.038	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	99	0	0	98	16	14.04	-	-	-	G	56515226	C	G	56515226	2	3	605	1	0	0	0	0	0	0	0	1	10552	900	32	2		2	NLRP5	19	56515226	Silent	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09	42949286	56515226	2613757	32	53044										
PLXNB2	0	genome.wustl.edu	37	chr22	50719361	50719361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	cagcacggggatgccggcctCgtgcacgtcgttggtctggt	16	12	1	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	22	50719361	50719361	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.3805	p.E1269K	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	77	0	0	8	19	70.37	-	-	-	T	50719361	C	T	50719361	3	4	605	1	0	0	0	0	1	0	0	0	12198	893	31	1	1767	1	PLXNB2	22	50719361	Missense_Mutation	SNP	C	TCGA-BH-A1FM-01A-11D-A13L-09		50719361	585205	33	53045										
HUWE1	0	genome.wustl.edu	37	chrX	53588774	53588774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	atcatcctcccggtcaaagcGctcaaatcggaccaagggag	10	13	3	0			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	53588774	53588774	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.7450	p.R2484C	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	103	0	0	79	42	34.71	-	-	-	A	53588774	G	A	53588774	3	1	605	1	0	0	0	0	1	0	0	0	7515	1087	38	1	5794	1	HUWE1	23	53588774	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09		53588774	101681786	34	53046										
ATP2B3	0	genome.wustl.edu	37	chrX	152807837	152807837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.228571428571429	8	0.0584390302804466	2.42100731812312	5.8003300330033	1.22830518345952	0.637186343068696	1	0	ccaatgacctcaagatcgacGagagctccctgacgggcgag	12	13	1	4			TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	152807837	152807837	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.721	p.E241K	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	43	0	0	26	15	36.59	-	-	-	A	152807837	G	A	152807837	3	1	605	1	0	0	0	0	1	0	0	0	1145	1059	37	1	735	1	ATP2B3	23	152807837	Missense_Mutation	SNP	G	TCGA-BH-A1FM-01A-11D-A13L-09	99219063	152807837	2462723	35	53047										
CSMD2	0	genome.wustl.edu	37	chr1	33999492	33999492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gcctttttgacaacggaagaGgactgtgcttccaacctgcg	11	11	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	33999492	33999492	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.9895	p.L3299F	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	123	0	0	90	68	43.04	-	-	-	A	33999492	G	A	33999492	3	1	606	1	0	0	0	0	1	0	0	0	3977	1000	35	4	1032	4	CSMD2	1	33999492	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		33999492	215251129	1	53048										
MACF1	0	genome.wustl.edu	37	chr1	39895636	39895636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ccaagttccagtctacttatGaggaactgaccgggtggctg	12	10	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	39895636	39895636	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.10840	p.E3614Q	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	49	0	0	92	32	25.81	-	-	-	C	39895636	G	C	39895636	3	2	606	1	0	0	0	0	1	0	0	0	9211	1291	45	2	17229	2	MACF1	1	39895636	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	5896144	39895636	209354985	2	53049										
IPP	0	genome.wustl.edu	37	chr1	46206927	46206927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cagaaattcacagcaaagatGaacaacttcagtcaactgta	6	9	3	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	46206927	46206927	G	A	SNP	IPP	ENST00000396478	human	ensembl	69_37n	-1	known	missense	c.370	p.H124Y	0.923	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IPP	HGNC	ENSG00000197429	53	0	0	67	16	19.28	-	-	-	A	46206927	G	A	46206927	3	1	606	1	0	0	0	0	1	0	0	0	7854	1290	45	2	1514	2	IPP	1	46206927	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	6311291	46206927	203043694	3	53050										
PDE4B	0	genome.wustl.edu	37	chr1	66384309	66384309	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gattattttgaatgtagcttGagtaaatcctacagttcttc	7	6	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	66384309	66384309	G	C	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.72	p.L24F	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	81	0	0	78	21	21.21	-	-	-	C	66384309	G	C	66384309	3	2	606	1	0	0	0	0	1	0	0	0	11713	1281	45	2	78	2	PDE4B	1	66384309	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	20177382	66384309	182866312	4	53051										
FLG2	0	genome.wustl.edu	37	chr1	152326689	152326689	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcagatatatgttgtccagaActagagaaattgtctgagcc	9	7	2	4			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	152326689	152326689	A	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.3573	p.S1191R	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	155	0	0	144	32	18.08	-	-	-	T	152326689	A	T	152326689	3	4	606	1	0	0	0	0	1	0	0	0	5969	40	2	5	3606	5	FLG2	1	152326689	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	85942380	152326689	96923932	5	53052										
FCER1A	0	genome.wustl.edu	37	chr1	159275777	159275777	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aatgtaatgaatgttcttcaGactggctgctccttcaggcc	9	10	3	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	159275777	159275777	G	A	SNP	FCER1A	ENST00000368115	human	ensembl	69_37n	1	known	splice_site	c.332-1	e4-1	0.992	-	-	-	no_errors	FCER1A	HGNC	ENSG00000179639	61	0	0	79	19	19	-	-	-	A	159275777	G	A	159275777	5	1	606	1	0	0	0	0	0	0	1	0	5820	956	33	2	345	2	FCER1A	1	159275777	Splice_Site	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	6949088	159275777	89974844	6	53053										
XCL1	0	genome.wustl.edu	37	chr1	168549314	168549314	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcaccaggtgtagggagtgaAgtctcagataagaggacctg	14	7	2	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	168549314	168549314	A	C	SNP	XCL1	ENST00000367818	human	ensembl	69_37n	1	known	missense	c.75	p.E25D	0.995	superfamily_Chemokine_IL8-like_dom,prints_Chemokine_lymphotactin_XCL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_lymphotactin_XCL1	-	no_errors	XCL1	HGNC	ENSG00000143184	154	0	0	230	64	21.69	-	-	-	C	168549314	A	C	168549314	3	2	606	1	0	0	0	0	1	0	0	0	17520	69	3	5	81	5	XCL1	1	168549314	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	9273537	168549314	80701307	7	53054										
FMO1	0	genome.wustl.edu	37	chr1	171254413	171254413	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gatgaactcctgacctatatCaatgcaaaacccaacctgtt	5	12	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	171254413	171254413	C	G	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.1329	p.I443M	0.733	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	136	0	0	179	42	19	-	-	-	G	171254413	C	G	171254413	3	3	606	1	0	0	0	0	1	0	0	0	6000	816	29	2	1359	2	FMO1	1	171254413	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	2705099	171254413	77996208	8	53055										
HMCN1	0	genome.wustl.edu	37	chr1	186114610	186114610	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cggagggcagatgcggcggtAccgcacatgtgataaccctc	14	12	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	186114610	186114610	A	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.14342	p.Y4781F	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	78	0	0	57	28	32.94	-	-	-	T	186114610	A	T	186114610	3	4	606	1	0	0	0	0	1	0	0	0	7271	391	14	5	14708	5	HMCN1	1	186114610	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	14860197	186114610	63136011	9	53056										
F13B	0	genome.wustl.edu	37	chr1	197031086	197031086	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	taaccattactcaggtcaggCttagtgcatttttctatggg	9	8	3	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	197031086	197031086	C	A	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	missense	c.279	p.K93N	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	86	0	0	113	16	12.4	-	-	-	A	197031086	C	A	197031086	3	1	606	1	0	0	0	0	1	0	0	0	5378	796	28	4	1746	4	F13B	1	197031086	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	10916476	197031086	52219535	10	53057										
ASPM	0	genome.wustl.edu	37	chr1	197086988	197086988	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tttaacattaataattttctCtgtgctaagactcttcgcca	4	9	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	197086988	197086988	C	G	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.3996	p.Q1332H	0.881	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	186	0	0	264	44	14.29	-	-	-	G	197086988	C	G	197086988	3	3	606	1	0	0	0	0	1	0	0	0	1060	912	32	2	6485	2	ASPM	1	197086988	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	55902	197086988	52163633	11	53058										
PGBD5	0	genome.wustl.edu	37	chr1	230459309	230459309	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gcattgttgatggcgatgctGatggcgaaccagaacacctg	13	9	0	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	230459309	230459309	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	silent	c.1527	p.I509	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	135	0	0	103	68	39.77	-	-	-	A	230459309	G	A	230459309	2	1	606	1	0	0	0	0	0	0	0	1	11858	1280	45	2		2	PGBD5	1	230459309	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	33372321	230459309	18791312	12	53059										
CPSF3	0	genome.wustl.edu	37	chr2	9613060	9613060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttcagactgtagaatgtgaaGagggaagtgaagacgatgaa	14	3	1	7			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	9613060	9613060	G	C	SNP	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	missense	c.1969	p.E657Q	1.000	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	67	0	0	45	26	36.62	-	-	-	C	9613060	G	C	9613060	3	2	606	1	0	0	0	0	1	0	0	0	3856	943	33	2	2039	2	CPSF3	2	9613060	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		9613060	233586313	13	53060										
SULT6B1	0	genome.wustl.edu	37	chr2	37415655	37415655	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gtgtccagcgcttggaaagtTtctgaggtgcacatggtgat	14	7	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	37415655	37415655	T	A	SNP	SULT6B1	ENST00000535679	human	ensembl	69_37n	-1	known	missense	c.129	p.E43D	0.988	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT6B1	HGNC	ENSG00000138068	187	0	0	119	52	30.41	-	-	-	A	37415655	T	A	37415655	3	1	606	1	0	0	0	0	1	0	0	0	15475	1838	64	5	810	5	SULT6B1	2	37415655	Missense_Mutation	SNP	T	TCGA-BH-A1FN-01A-11D-A13L-09	27802595	37415655	205783718	14	53061										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71191567	71191567	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tccctttttcttctccctcaGatctacccccccatcaacgt	2	19	5	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	71191567	71191567	G	C	SNP	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	splice_site	c.1144-1	e12-1	1.000	-	-	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	120	0	0	64	20	23.81	-	-	-	C	71191567	G	C	71191567	5	2	606	1	0	0	0	0	0	0	1	0	1182	956	33	2	1189	2	ATP6V1B1	2	71191567	Splice_Site	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	33775912	71191567	172007806	15	53062										
POLR1A	0	genome.wustl.edu	37	chr2	86308729	86308729	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	attaaagggtattaccttgaGggcggcaccaccaagaaatc	10	9	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	86308729	86308729	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	silent	c.918	p.P306	0.840	pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	134	0	0	73	38	34.23	-	-	-	A	86308729	G	A	86308729	2	1	606	1	0	0	0	0	0	0	0	1	12283	987	35	4		4	POLR1A	2	86308729	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	15117162	86308729	156890644	16	53063										
MTX2	0	genome.wustl.edu	37	chr2	177188193	177188193	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	agaatatatgtctccatctgGtaagtgtgtttttttttctt	7	5	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	177188193	177188193	G	A	SNP	MTX2	ENST00000249442	human	ensembl	69_37n	1	known	splice_site	c.208+1	e4+1	1.000	-	-	-	no_errors	MTX2	HGNC	ENSG00000128654	288	0	0	306	51	14.25	-	-	-	A	177188193	G	A	177188193	5	1	606	1	0	0	0	0	0	0	1	0	10040	1275	44	4	223	4	MTX2	2	177188193	Splice_Site	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	90879464	177188193	66011180	17	53064										
TTN	0	genome.wustl.edu	37	chr2	179584070	179584070	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttccatcctgaaaccagccaActgaaatcggggctgagcca	9	13	0	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	179584070	179584070	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20315	p.V6772A	0.977	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	62	0	0	94	11	10.48	-	-	-	G	179584070	A	G	179584070	3	3	606	1	0	0	0	0	1	0	0	0	16832	43	2	5	80602	5	TTN	2	179584070	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	2395877	179584070	63615303	18	53065										
DNAH7	0	genome.wustl.edu	37	chr2	196619103	196619103	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttctttgtcttccatcacttCatagtcaaacccaagaagat	4	11	5	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	196619103	196619103	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.11722	p.E3908K	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	104	0	0	44	54	55.1	-	-	-	T	196619103	C	T	196619103	3	4	606	1	0	0	0	0	1	0	0	0	4641	835	29	2	364	2	DNAH7	2	196619103	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	17035033	196619103	46580270	19	53066										
CRYGC	0	genome.wustl.edu	37	chr2	208994511	208994511	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atttgtgttctgctcaccttCcccatggctggttgacacgg	10	12	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	208994511	208994511	C	T	SNP	CRYGC	ENST00000282141	human	ensembl	69_37n	-1	known	silent	c.6	p.G2	1.000	superfamily_G_crystallin-rel,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254	47	0	0	43	22	33.85	-	-	-	T	208994511	C	T	208994511	2	4	606	1	0	0	0	0	0	0	0	1	3946	842	30	2		2	CRYGC	2	208994511	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	12375408	208994511	34204862	20	53067										
LRRFIP1	0	genome.wustl.edu	37	chr2	238672126	238672126	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cccgtagaaacccttaaagaTgttaaaaaagagttaacgta	7	7	0	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	238672126	238672126	T	C	SNP	LRRFIP1	ENST00000392000	human	ensembl	69_37n	1	known	silent	c.1770	p.D590	0.000	NULL	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	106	0	0	65	19	22.62	-	-	-	C	238672126	T	C	238672126	2	2	606	1	0	0	0	0	0	0	0	1	9093	1461	51	5		5	LRRFIP1	2	238672126	Silent	SNP	T	TCGA-BH-A1FN-01A-11D-A13L-09	29677615	238672126	4527247	21	53068										
CADPS	0	genome.wustl.edu	37	chr3	62648054	62648054	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tctgatctgggctgcttgctCatctggattgtccagctgca	11	11	4	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	62648054	62648054	C	T	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.904	p.E302K	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	162	0	0	18	49	73.13	-	-	-	T	62648054	C	T	62648054	3	4	606	1	0	0	0	0	1	0	0	0	2595	835	29	2	3338	2	CADPS	3	62648054	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		62648054	135374376	22	53069										
CEP63	0	genome.wustl.edu	37	chr3	134264532	134264532	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gagcgggctaatgacactatCtgtgccaatgagttggaaat	12	7	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	134264532	134264532	C	G	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	missense	c.660	p.I220M	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	76	0	0	90	27	23.08	-	-	-	G	134264532	C	G	134264532	3	3	606	1	0	0	0	0	1	0	0	0	3286	903	32	2	682	2	CEP63	3	134264532	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	71616478	134264532	63757898	23	53070										
MUC4	0	genome.wustl.edu	37	chr3	195475921	195475921	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gcatctgaagtaagccttcaGcgtgctcacgttcactgtcg	10	12	4	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	195475921	195475921	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.15886	p.L5296V	0.135	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	21	0	0	44	7	13.73	-	-	-	C	195475921	G	C	195475921	3	2	606	1	0	0	0	0	1	0	0	0	10050	962	34	4	360	4	MUC4	3	195475921	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	61211389	195475921	2546509	24	53071										
EVC2	0	genome.wustl.edu	37	chr4	5627522	5627522	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tagttattaatttttggtggAgctttttcttttcctgcttt	7	5	1	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	5627522	5627522	A	G	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	missense	c.2000	p.L667P	0.944	NULL	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	366	0	0	114	63	35.59	-	-	-	G	5627522	A	G	5627522	3	3	606	1	0	0	0	0	1	0	0	0	5323	304	11	5	1966	5	EVC2	4	5627522	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09		5627522	185526754	25	53072										
MAN2B2	0	genome.wustl.edu	37	chr4	6612888	6612888	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcacgctgaacgacacctcaGtcgtccacccagtgctctgg	9	16	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	6612888	6612888	G	C	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	missense	c.2446	p.V816L	0.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	33	0	0	7	13	65	-	-	-	C	6612888	G	C	6612888	3	2	606	1	0	0	0	0	1	0	0	0	9288	1029	36	4	2504	4	MAN2B2	4	6612888	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	985366	6612888	184541388	26	53073										
DSPP	0	genome.wustl.edu	37	chr4	88534180	88534180	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	taataacagcaagggccaggAgggccaggaccatgggaaag	15	8	0	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	88534180	88534180	A	G	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.842	p.E281G	0.067	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	100	1	0.99	85	23	21.3	-	-	-	G	88534180	A	G	88534180	3	3	606	1	0	0	0	0	1	0	0	0	4817	304	11	5	852	5	DSPP	4	88534180	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	81921292	88534180	102620096	27	53074										
GRID2	0	genome.wustl.edu	37	chr4	94159585	94159585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atggaggcaatcccaatgtcCactttgaaatccttggaacc	8	11	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	94159585	94159585	C	T	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.1189	p.H397Y	0.994	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	119	0	0	78	63	44.68	-	-	-	T	94159585	C	T	94159585	3	4	606	1	0	0	0	0	1	0	0	0	6823	594	21	4	1219	4	GRID2	4	94159585	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	5625405	94159585	96994691	28	53075										
LRIT3	0	genome.wustl.edu	37	chr4	110791367	110791367	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cggagacaaatgccgcaataGaaaacctcagggtggtcagt	12	9	2	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	110791367	110791367	G	C	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	missense	c.1327	p.E443Q	0.993	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	80	0	0	38	26	40.62	-	-	-	C	110791367	G	C	110791367	3	2	606	1	0	0	0	0	1	0	0	0	9015	943	33	2	1337	2	LRIT3	4	110791367	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	16631782	110791367	80362909	29	53076										
ANK2	0	genome.wustl.edu	37	chr4	114177049	114177049	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cactaccgtgtaaccaaactCcttttagacaagagagccaa	6	12	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	114177049	114177049	C	G	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.1149	p.L383	0.956	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	38	0	0	36	27	42.86	-	-	-	G	114177049	C	G	114177049	2	3	606	1	0	0	0	0	0	0	0	1	621	842	30	2		2	ANK2	4	114177049	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	3385682	114177049	76977227	30	53077										
FHDC1	0	genome.wustl.edu	37	chr4	153875460	153875460	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aatttcttaagtttttgccaGagtcagaagaggtaagaaat	9	4	2	4			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	153875460	153875460	G	C	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	1	known	missense	c.652	p.E218Q	0.993	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	170	0	0	103	55	34.81	-	-	-	C	153875460	G	C	153875460	3	2	606	1	0	0	0	0	1	0	0	0	5922	943	33	2	662	2	FHDC1	4	153875460	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	39698411	153875460	37278816	31	53078										
MYO10	0	genome.wustl.edu	37	chr5	16877797	16877797	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gaaaatgctggccattttctCtcagccagacccgtgttccc	8	14	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	16877797	16877797	C	G	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.41	p.R14T	0.988	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	64	0	0	27	27	50	-	-	-	G	16877797	C	G	16877797	3	3	606	1	0	0	0	0	1	0	0	0	10134	913	32	2	6295	2	MYO10	5	16877797	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		16877797	164037463	32	53079										
NIPBL	0	genome.wustl.edu	37	chr5	36976318	36976318	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cagcaaatcaagtgcctgttTtacaacagaacacttcagtt	6	10	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	36976318	36976318	T	G	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.1309	p.L437V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	74	0	0	55	33	37.5	-	-	-	G	36976318	T	G	36976318	3	3	606	1	0	0	0	0	1	0	0	0	10500	1838	64	5	1339	5	NIPBL	5	36976318	Missense_Mutation	SNP	T	TCGA-BH-A1FN-01A-11D-A13L-09	20098521	36976318	143938942	33	53080										
IRF1	0	genome.wustl.edu	37	chr5	131822339	131822339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aggcagagtggagctgctgaGtccatcagagaaggtatcag	15	7	2	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	131822339	131822339	G	A	SNP	IRF1	ENST00000245414	human	ensembl	69_37n	-1	known	missense	c.454	p.L152F	0.997	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347	132	0	0	56	41	42.27	-	-	-	A	131822339	G	A	131822339	3	1	606	1	0	0	0	0	1	0	0	0	7881	1029	36	4	543	4	IRF1	5	131822339	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	94846021	131822339	49092921	34	53081										
STK10	0	genome.wustl.edu	37	chr5	171517330	171517330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	accatccaccacaaatttgcGtgtccgcttgagggtttttt	8	11	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	171517330	171517330	G	A	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	missense	c.1591	p.R531C	0.879	NULL	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	183	0	0	104	37	26.24	-	-	-	A	171517330	G	A	171517330	3	1	606	1	0	0	0	0	1	0	0	0	15377	1145	40	1	1355	1	STK10	5	171517330	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	39694991	171517330	9397930	35	53082										
ADAMTS2	0	genome.wustl.edu	37	chr5	178549700	178549700	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcaggacgctcctcctggcaGatgccgaagctgtcgtccgc	12	15	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	178549700	178549700	G	C	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.3033	p.I1011M	0.936	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	16	0	0	8	4	33.33	-	-	-	C	178549700	G	C	178549700	3	2	606	1	0	0	0	0	1	0	0	0	265	932	33	2	614	2	ADAMTS2	5	178549700	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	7032370	178549700	2365560	36	53083										
ZBTB24	0	genome.wustl.edu	37	chr6	109803079	109803079	+	Frame_Shift_Del	DEL	G	G	-													0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ggcagcaagtaaggctttgtGggcccggaaatgtacattct							TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	109803079	109803079	G	-	DEL	ZBTB24	ENST00000230122	human	ensembl	69_37n	-1	known	frame_shift_del	c.151	p.H51fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365	63	0	0	117	29	19.59	-	-	-	-	109803079	G	-	109803079	7	5	606	1	0	1	0	1	0	0	0	0	17627	1348	47	0	2016	0	ZBTB24	6	109803079	Frame_Shift_Del	DEL	G	TCGA-BH-A1FN-01A-11D-A13L-09		109803079	61311988	37	53084										
L3MBTL3	0	genome.wustl.edu	37	chr6	130374131	130374131	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atggagaagagagagatgatGaaatggtgagtgcctctgcc	15	5	1	6			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	130374131	130374131	G	C	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.577	p.E193Q	1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	47	0	0	47	42	47.19	-	-	-	C	130374131	G	C	130374131	3	2	606	1	0	0	0	0	1	0	0	0	8647	1291	45	2	595	2	L3MBTL3	6	130374131	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	20571052	130374131	40740936	38	53085										
VNN2	0	genome.wustl.edu	37	chr6	133078597	133078597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tccagttcacctgagggtctGggatatcctccagataaggg	12	10	2	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	133078597	133078597	G	A	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.302	p.P101L	1.000	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	87	0	0	126	24	16	-	-	-	A	133078597	G	A	133078597	3	1	606	1	0	0	0	0	1	0	0	0	17280	1348	47	4	1284	4	VNN2	6	133078597	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	2704466	133078597	38036470	39	53086										
KIAA1244	0	genome.wustl.edu	37	chr6	138582743	138582743	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gtccagaaaaagatcaatttCaaaaagaaagtctcatctgg	7	7	4	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	138582743	138582743	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.1184	p.S395L	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	118	0	0	126	143	53.16	-	-	-	T	138582743	C	T	138582743	3	4	606	1	0	0	0	0	1	0	0	0	8269	838	29	2	1226	2	KIAA1244	6	138582743	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	5504146	138582743	32532324	40	53087										
PKD1L1	0	genome.wustl.edu	37	chr7	47835714	47835714	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atttactttgaaaagattttCttttttggggtaaagtcatg	8	3	2	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	47835714	47835714	C	G	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.8228	p.R2743T	0.853	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	114	0	0	118	68	36.56	-	-	-	G	47835714	C	G	47835714	3	3	606	1	0	0	0	0	1	0	0	0	12038	913	32	2	333	2	PKD1L1	7	47835714	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		47835714	111302949	41	53088										
ASL	0	genome.wustl.edu	37	chr7	65546942	65546942	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctggagaaggcagggctcctCaccaaggccgagatggacca	14	12	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	65546942	65546942	C	T	SNP	ASL	ENST00000304874	human	ensembl	69_37n	1	known	silent	c.165	p.L55	0.997	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Argininosuccinate_lyase	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522	25	0	0	19	10	34.48	-	-	-	T	65546942	C	T	65546942	2	4	606	1	0	0	0	0	0	0	0	1	1048	813	29	2		2	ASL	7	65546942	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	17711228	65546942	93591721	42	53089										
CROT	0	genome.wustl.edu	37	chr7	87011255	87011255	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tttgatgcaatgattatggtGaacatcagttattatgtgga	10	3	1	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	87011255	87011255	G	A	SNP	CROT	ENST00000331536	human	ensembl	69_37n	1	known	silent	c.1008	p.V336	0.010	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469	186	0	0	143	28	16.37	-	-	-	A	87011255	G	A	87011255	2	1	606	1	0	0	0	0	0	0	0	1	3924	1277	45	2		2	CROT	7	87011255	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	21464313	87011255	72127408	43	53090										
UFSP1	0	genome.wustl.edu	37	chr7	100486535	100486535	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gttgtagaaggagttggggtCaaaggctgcactcacctctt	13	8	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	100486535	100486535	C	G	SNP	UFSP1	ENST00000388761	human	ensembl	69_37n	-1	known	missense	c.358	p.D120H	0.983	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP1	HGNC	ENSG00000176125	87	0	0	10	29	74.36	-	-	-	G	100486535	C	G	100486535	3	3	606	1	0	0	0	0	1	0	0	0	17034	826	29	2	74	2	UFSP1	7	100486535	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	13475280	100486535	58652128	44	53091										
DGKI	0	genome.wustl.edu	37	chr7	137206651	137206651	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cttgtcatagtggaatccttCatagtcttgtaaactgattt	7	7	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	137206651	137206651	C	T	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.2272	p.E758K	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	149	0	0	68	48	41.38	-	-	-	T	137206651	C	T	137206651	3	4	606	1	0	0	0	0	1	0	0	0	4507	835	29	2	1044	2	DGKI	7	137206651	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	36720116	137206651	21932012	45	53092										
ENPP2	0	genome.wustl.edu	37	chr8	120602841	120602841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	taggtaattactcaagaactCagttctatcacatgtgacat	6	8	4	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	8	120602841	120602841	C	G	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1267	p.E423Q	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	124	0	0	150	35	18.92	-	-	-	G	120602841	C	G	120602841	3	3	606	1	0	0	0	0	1	0	0	0	5167	835	29	2	1611	2	ENPP2	8	120602841	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		120602841	25761181	46	53093										
DENND4C	0	genome.wustl.edu	37	chr9	19331976	19331976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atattttattctctttctagGaaataaaaacagctcataaa	3	6	3	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	19331976	19331976	G	A	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.1546	p.E516K	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	103	0	0	98	78	44.32	-	-	-	A	19331976	G	A	19331976	3	1	606	1	0	0	0	0	1	0	0	0	4471	1188	41	2	1596	2	DENND4C	9	19331976	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		19331976	121881455	47	53094										
BAAT	0	genome.wustl.edu	37	chr9	104125001	104125001	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttatcaccttctcctacaatGaagaggaattgcccctgggc	8	12	2	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	104125001	104125001	G	A	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	silent	c.966	p.F322	0.998	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	81	0	0	31	29	48.33	-	-	-	A	104125001	G	A	104125001	2	1	606	1	0	0	0	0	0	0	0	1	1284	1281	45	2		2	BAAT	9	104125001	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	84793025	104125001	37088430	48	53095										
IKBKAP	0	genome.wustl.edu	37	chr9	111674596	111674596	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cttgaattatctcccacgctCcggtcagtcgtccagtgcca	8	15	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	111674596	111674596	C	G	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	silent	c.1137	p.R379	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	59	0	0	53	13	19.7	-	-	-	G	111674596	C	G	111674596	2	3	606	1	0	0	0	0	0	0	0	1	7664	842	30	2		2	IKBKAP	9	111674596	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	7549595	111674596	29538835	49	53096										
SETX	0	genome.wustl.edu	37	chr9	135205210	135205210	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctttgaattttatgtttctaAtaatttgctttaagcaactt	4	5	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	135205210	135205210	A	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.1775	p.I592S	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	73	0	0	37	17	31.48	-	-	-	C	135205210	A	C	135205210	3	2	606	1	0	0	0	0	1	0	0	0	14229	101	4	5	6326	5	SETX	9	135205210	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	23530614	135205210	6008221	50	53097										
PDSS1	0	genome.wustl.edu	37	chr10	27024211	27024211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	acccagtggtgcatgagatcGcctatcagtacggaaaaaat	10	9	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	27024211	27024211	G	A	SNP	PDSS1	ENST00000376215	human	ensembl	69_37n	1	known	missense	c.874	p.A292T	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS1	HGNC	ENSG00000148459	247	0	0	111	90	44.78	-	-	-	A	27024211	G	A	27024211	3	1	606	1	0	0	0	0	1	0	0	0	11766	1087	38	1	908	1	PDSS1	10	27024211	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		27024211	108510536	51	53098										
USP54	0	genome.wustl.edu	37	chr10	75258420	75258420	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tgctgcaggactctagccctGatctgctctcttctgggagc	11	13	4	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	75258420	75258420	G	A	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	silent	c.5022	p.I1674	0.194	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	122	0	0	18	232	92.8	-	-	-	A	75258420	G	A	75258420	2	1	606	1	0	0	0	0	0	0	0	1	17182	1280	45	2		2	USP54	10	75258420	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	48234209	75258420	60276327	52	53099										
PPP1R3C	0	genome.wustl.edu	37	chr10	93390161	93390164	+	Frame_Shift_Del	DEL	CAGA	CAGA	-													0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcttgcaacgagcagttctcCagacagacaaagttcttctg							TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	CAGA	CAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	93390161	93390164	CAGA	-	DEL	PPP1R3C	ENST00000238994	human	ensembl	69_37n	-1	known	frame_shift_del	c.477_474	p.C158fs	1.000:1.000:1.000:0.998	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938	98	0	0	28	32	53.33	-	-	-	-	93390164	CAGA	-	93390161	7	5	606	1	0	1	0	1	0	0	0	0	12450	581	21	0	480	0	PPP1R3C	10	93390161	Frame_Shift_Del	DEL	CAGA	TCGA-BH-A1FN-01A-11D-A13L-09	18131741	93390161	42144586	53	53100										
ADAM12	0	genome.wustl.edu	37	chr10	127789701	127789701	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gcttcatcttcctccagtccAgaaattcatggaggctggtg	10	11	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	127789701	127789701	A	G	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.860	p.L287P	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	101	1	0.98	54	16	22.86	-	-	-	G	127789701	A	G	127789701	3	3	606	1	0	0	0	0	1	0	0	0	236	188	7	5	2037	5	ADAM12	10	127789701	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	34399540	127789701	7745046	54	53101										
RASSF7	0	genome.wustl.edu	37	chr11	563350	563350	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctggggggaggctgggaggtGaggacctggcccagccccac	19	12	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	563350	563350	G	A	SNP	RASSF7	ENST00000397582	human	ensembl	69_37n	1	known	silent	c.984	p.V328	0.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF7	HGNC	ENSG00000099849	13	0	0	8	5	38.46	-	-	-	A	563350	G	A	563350	2	1	606	1	0	0	0	0	0	0	0	1	13174	1277	45	2		2	RASSF7	11	563350	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		563350	134443166	55	53102										
OR52B2	0	genome.wustl.edu	37	chr11	6191248	6191248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aacatcatatggacaaagaaGccttgggtgacacaggcatc	10	9	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	6191248	6191248	G	A	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	silent	c.309	p.G103	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	58	0	0	30	19	37.25	-	-	-	A	6191248	G	A	6191248	2	1	606	1	0	0	0	0	0	0	0	1	11184	958	34	4		4	OR52B2	11	6191248	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	5627898	6191248	128815268	56	53103										
SLC43A1	0	genome.wustl.edu	37	chr11	57265233	57265233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ggtggcctcataccttgattCctgggaacgtaatggcagaa	12	9	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	57265233	57265233	C	A	SNP	SLC43A1	ENST00000278426	human	ensembl	69_37n	-1	known	missense	c.551	p.G184V	0.497	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150	67	0	0	52	13	20	-	-	-	A	57265233	C	A	57265233	3	1	606	1	0	0	0	0	1	0	0	0	14721	855	30	2	1168	2	SLC43A1	11	57265233	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	51073985	57265233	77741283	57	53104										
NUDT22	0	genome.wustl.edu	37	chr11	63995111	63995111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gtggtacatgaactcttttcCagtgtccttcaggagatctg	10	9	3	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	63995111	63995111	C	T	SNP	NUDT22	ENST00000279206	human	ensembl	69_37n	1	known	silent	c.552	p.S184	1.000	NULL	superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT22	HGNC	ENSG00000149761	74	0	0	41	25	37.88	-	-	-	T	63995111	C	T	63995111	2	4	606	1	0	0	0	0	0	0	0	1	10812	581	21	4		4	NUDT22	11	63995111	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	6729878	63995111	71011405	58	53105										
NRXN2	0	genome.wustl.edu	37	chr11	64435963	64435963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctgacgggcgagcccggcagGtcagctgtgttggggctgcc	18	12	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	64435963	64435963	G	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.1311	p.D437E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	57	0	0	28	20	41.67	-	-	-	T	64435963	G	T	64435963	3	4	606	1	0	0	0	0	1	0	0	0	10739	1252	44	4	4160	4	NRXN2	11	64435963	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	440852	64435963	70570553	59	53106										
SLC2A3	0	genome.wustl.edu	37	chr12	8078450	8078450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tccaacttacagaaactacaGtgaagatagtattaaccaca	5	9	0	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	8078450	8078450	G	A	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	missense	c.956	p.T319I	1.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	156	1	0.64	87	33	27.5	-	-	-	A	8078450	G	A	8078450	3	1	606	1	0	0	0	0	1	0	0	0	14634	1029	36	4	550	4	SLC2A3	12	8078450	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		8078450	125773445	60	53107										
A2M	0	genome.wustl.edu	37	chr12	9254262	9254262	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	taacagggactacgatccttGtaattgacctaatgaattag	8	7	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	9254262	9254262	G	T	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	nonsense	c.1275	p.Y425*	0.969	superfamily_Beta-lactam/transpept-like	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	82	0	0	26	45	63.38	-	-	-	T	9254262	G	T	9254262	4	4	606	1	0	0	0	0	0	1	0	0	4	1372	48	4	3249	4	A2M	12	9254262	Nonsense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	1175812	9254262	124597633	61	53108										
LRRK2	0	genome.wustl.edu	37	chr12	40681167	40681167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tttcagatatagcatctacaCtagcaagaatggtgatcaga	8	7	3	4			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	40681167	40681167	C	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.2515	p.L839I	0.959	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	116	0	0	71	20	21.98	-	-	-	A	40681167	C	A	40681167	3	1	606	1	0	0	0	0	1	0	0	0	9099	564	20	4	2593	4	LRRK2	12	40681167	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	31426905	40681167	93170728	62	53109										
APOF	0	genome.wustl.edu	37	chr12	56755197	56755197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cggctgagagatgtttgcgtCtttctgatcttggtaatact	11	7	3	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	56755197	56755197	C	G	SNP	APOF	ENST00000398189	human	ensembl	69_37n	-1	known	missense	c.793	p.D265H	0.091	NULL	NULL	-	no_errors	APOF	HGNC	ENSG00000175336	114	0	0	64	27	29.67	-	-	-	G	56755197	C	G	56755197	3	3	606	1	0	0	0	0	1	0	0	0	805	913	32	2	191	2	APOF	12	56755197	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	16074030	56755197	77096698	63	53110										
RB1	0	genome.wustl.edu	37	chr13	48916747	48916747	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gttcccagggaggttatattCaaaagaaaaaggaactgtgg	12	5	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	48916747	48916747	C	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.277	p.Q93*	1.000	superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	109	0	0	23	59	71.95	-	-	-	T	48916747	C	T	48916747	4	4	606	1	0	0	0	0	0	1	0	0	13181	827	29	2	287	2	RB1	13	48916747	Nonsense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		48916747	66253131	64	53111										
DIS3	0	genome.wustl.edu	37	chr13	73345227	73345227	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atgcagaaatacctgtccacGtcacattttaaggaacacaa	6	10	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	73345227	73345227	G	C	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	missense	c.1662	p.D554E	0.844	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	184	0	0	194	74	27.61	-	-	-	C	73345227	G	C	73345227	3	2	606	1	0	0	0	0	1	0	0	0	4571	1136	40	3	1254	3	DIS3	13	73345227	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	24428480	73345227	41824651	65	53112										
GRK1	0	genome.wustl.edu	37	chr13	114321853	114321853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gtccaagtgtgagtccctccGcgacagcctcagcctggagt	12	14	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	114321853	114321853	G	A	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	missense	c.152	p.R51H	0.959	superfamily_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	39	0	0	41	13	23.64	-	-	-	A	114321853	G	A	114321853	3	1	606	1	0	0	0	0	1	0	0	0	6841	1087	38	1	154	1	GRK1	13	114321853	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	40976626	114321853	848025	66	53113										
FSCB	0	genome.wustl.edu	37	chr14	44973863	44973863	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tttgcttcaccttccaaaacAaccgatcctaattttactgc	3	13	1	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	14	44973863	44973863	A	C	SNP	FSCB	ENST00000340446	human	ensembl	69_37n	-1	known	silent	c.2328	p.V776	0.001	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	42	0	0	56	16	22.22	-	-	-	C	44973863	A	C	44973863	2	2	606	1	0	0	0	0	0	0	0	1	6115	117	5	5		5	FSCB	14	44973863	Silent	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09		44973863	62375677	67	53114										
C15orf55	0	genome.wustl.edu	37	chr15	34648639	34648639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctagtacctggggatacggaGagcagtgtgattccctgtgg	15	8	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	34648639	34648639	G	C	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	missense	c.2346	p.E782D	0.000	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	36	0	0	6	24	80	-	-	-	C	34648639	G	C	34648639	3	2	606	1	0	0	0	0	1	0	0	0	1815	933	33	2	2372	2	C15orf55	15	34648639	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		34648639	67882753	68	53115										
RAD51	0	genome.wustl.edu	37	chr15	40998407	40998407	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aaattagttccaatgggtttCaccactgcaactgaattcca	6	10	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	40998407	40998407	C	A	SNP	RAD51	ENST00000267868	human	ensembl	69_37n	1	known	missense	c.258	p.F86L	1.000	pfam_DNA_recomb/repair_Rad51_C,pirsf_DNA_recomb/repair_RecA-like,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180	100	0	0	23	40	63.49	-	-	-	A	40998407	C	A	40998407	3	1	606	1	0	0	0	0	1	0	0	0	13068	825	29	2	393	2	RAD51	15	40998407	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	6349768	40998407	61532985	69	53116										
TGM7	0	genome.wustl.edu	37	chr15	43569149	43569149	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	attaaggtgttggtgagggtGacatggactctcagcgcctt	14	7	1	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	43569149	43569149	G	C	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	silent	c.1884	p.V628	0.986	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	89	0	0	16	23	58.97	-	-	-	C	43569149	G	C	43569149	2	2	606	1	0	0	0	0	0	0	0	1	15930	1277	45	2		2	TGM7	15	43569149	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	2570742	43569149	58962243	70	53117										
ZSCAN29	0	genome.wustl.edu	37	chr15	43661287	43661287	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gatttcgggggtgtcatcttCtccaagcgcacttcctgccc	10	14	3	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	43661287	43661287	C	A	SNP	ZSCAN29	ENST00000396976	human	ensembl	69_37n	-1	known	missense	c.357	p.E119D	1.000	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265	96	0	0	19	31	62	-	-	-	A	43661287	C	A	43661287	3	1	606	1	0	0	0	0	1	0	0	0	18327	912	32	2	2217	2	ZSCAN29	15	43661287	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	92138	43661287	58870105	71	53118										
KIAA0556	0	genome.wustl.edu	37	chr16	27761615	27761615	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aaatcgccaaggcctctggaAccctggcgggaggtatggcg	15	11	1	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	27761615	27761615	A	T	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.3334	p.T1112S	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	63	0	0	30	14	31.11	-	-	-	T	27761615	A	T	27761615	3	4	606	1	0	0	0	0	1	0	0	0	8235	43	2	5	3396	5	KIAA0556	16	27761615	Missense_Mutation	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09		27761615	62593138	72	53119										
ZNF48	0	genome.wustl.edu	37	chr16	30408955	30408955	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aggcagatgtcagatctggtGaaacaccagcggacccacac	11	12	2	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	30408955	30408955	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	silent	c.384	p.V128	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	38	0	0	25	19	43.18	-	-	-	A	30408955	G	A	30408955	2	1	606	1	0	0	0	0	0	0	0	1	18030	1277	45	2		2	ZNF48	16	30408955	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	2647340	30408955	59945798	73	53120										
ZNF629	0	genome.wustl.edu	37	chr16	30794530	30794530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ccgcacactgggcacttgaaCgggtcctcgcgcaggtgagt	14	13	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	30794530	30794530	C	T	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	silent	c.1119	p.P373	0.971	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	78	0	0	33	26	44.07	-	-	-	T	30794530	C	T	30794530	2	4	606	1	0	0	0	0	0	0	0	1	18149	523	19	1		1	ZNF629	16	30794530	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	385575	30794530	59560223	74	53121										
KIFC3	0	genome.wustl.edu	37	chr16	57803851	57803852	+	Frame_Shift_Ins	INS	-	-	A													0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atgggcccgctccagctctgINSactcgtacatggcaatctgg							TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	57803851	57803852	-	A	INS	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	frame_shift_ins	c.956_955	p.S319fs	0.674:0.677	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	43	0	0	21	9	30	-	-	-	A	57803852	-	A	57803851	7	5	606	1	0	1	1	0	0	0	0	0	8366	1294	45	0	1602	0	KIFC3	16	57803851	Frame_Shift_Ins	INS	-	TCGA-BH-A1FN-01A-11D-A13L-09	27009321	57803851	32550902	75	53122										
CLEC18B	0	genome.wustl.edu	37	chr16	74446736	74446736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aggtgctgatgttgagacgtCcatggttctggcagctcatg	14	8	2	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	74446736	74446736	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	missense	c.719	p.G240E	0.996	smart_EGF-like,pfscan_EG-like_dom	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	172	0	0	80	11	12.09	-	-	-	T	74446736	C	T	74446736	3	4	606	1	0	0	0	0	1	0	0	0	3533	855	30	2	680	2	CLEC18B	16	74446736	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	16642885	74446736	15908017	76	53123										
TP53	0	genome.wustl.edu	37	chr17	7577099	7577099	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cttcctctgtgcgccggtctCtcccaggacaggcacaaaca	9	16	2	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	7577099	7577099	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.839	p.R280T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	111	0	0	16	31	65.96	-	-	-	G	7577099	C	G	7577099	3	3	606	1	0	0	0	0	1	0	0	0	16477	913	32	2	447	2	TP53	17	7577099	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		7577099	73618111	77	53124										
NBR1	0	genome.wustl.edu	37	chr17	41349048	41349048	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gtgggacccagtttgtgtgtGagacagtaatccgatccctt	12	9	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	41349048	41349048	G	T	SNP	NBR1	ENST00000341165	human	ensembl	69_37n	1	known	nonsense	c.1951	p.E651*	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554	114	0	0	53	31	36.9	-	-	-	T	41349048	G	T	41349048	4	4	606	1	0	0	0	0	0	1	0	0	10272	1291	45	2	2009	2	NBR1	17	41349048	Nonsense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	33771949	41349048	39846162	78	53125										
SGCA	0	genome.wustl.edu	37	chr17	48247653	48247653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	accctcctggtgcccctgctGgtggccctgcttctcacctt	9	18	1	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	48247653	48247653	G	A	SNP	SGCA	ENST00000504073	human	ensembl	69_37n	1	novel	missense	c.214	p.G72S	0.971	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SGCA	HGNC	ENSG00000108823	89	0	0	51	16	23.88	-	-	-	A	48247653	G	A	48247653	3	1	606	1	0	0	0	0	1	0	0	0	14287	1335	47	4	923	4	SGCA	17	48247653	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	6898605	48247653	32947557	79	53126										
KIAA0195	0	genome.wustl.edu	37	chr17	73484883	73484883	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gccgggagacctcttcccccCcttctcccctccaccctcac	5	24	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	73484883	73484883	C	A	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.656	p.P219H	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	33	0	0	12	8	40	-	-	-	A	73484883	C	A	73484883	3	1	606	1	0	0	0	0	1	0	0	0	8212	623	22	4	678	4	KIAA0195	17	73484883	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	25237230	73484883	7710327	80	53127										
RNF157	0	genome.wustl.edu	37	chr17	74208563	74208563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	agtggctggcaaaatagcttCctagagaggaacaaacaaaa	10	7	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	74208563	74208563	C	T	SNP	RNF157	ENST00000269391	human	ensembl	69_37n	-1	known	missense	c.89	p.G30E	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576	58	0	0	35	23	39.66	-	-	-	T	74208563	C	T	74208563	3	4	606	1	0	0	0	0	1	0	0	0	13540	869	30	2	2022	2	RNF157	17	74208563	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	723680	74208563	6986647	81	53128										
DUS1L	0	genome.wustl.edu	37	chr17	80018821	80018821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ggccagctcctctcgcagctCctggtgcacctgcagcctga	11	17	1	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	80018821	80018821	C	T	SNP	DUS1L	ENST00000306796	human	ensembl	69_37n	-1	known	missense	c.859	p.E287K	1.000	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS1L	HGNC	ENSG00000169718	38	0	0	21	11	34.38	-	-	-	T	80018821	C	T	80018821	3	4	606	1	0	0	0	0	1	0	0	0	4840	864	30	2	586	2	DUS1L	17	80018821	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	5810258	80018821	1176389	82	53129										
PRKCSH	0	genome.wustl.edu	37	chr19	11557971	11557971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	catcagggacaagtaccggtCcgaggtcagtggaggagaag	16	8	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	11557971	11557971	C	T	SNP	PRKCSH	ENST00000252455	human	ensembl	69_37n	1	known	missense	c.845	p.S282F	0.213	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_HAND_2	-	no_errors	PRKCSH	HGNC	ENSG00000130175	37	0	0	18	4	18.18	-	-	-	T	11557971	C	T	11557971	3	4	606	1	0	0	0	0	1	0	0	0	12597	855	30	2	879	2	PRKCSH	19	11557971	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		11557971	47571012	83	53130										
ZNF682	0	genome.wustl.edu	37	chr19	20135146	20135146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cagaaactcccactcctccaGagagaattctatggtcacat	6	13	2	3			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	20135146	20135146	G	C	SNP	ZNF682	ENST00000397165	human	ensembl	69_37n	-1	known	missense	c.43	p.L15V	0.360	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124	140	0	0	67	67	50	-	-	-	C	20135146	G	C	20135146	3	2	606	1	0	0	0	0	1	0	0	0	18185	933	33	2	1465	2	ZNF682	19	20135146	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	8577175	20135146	38993837	84	53131										
ZNF91	0	genome.wustl.edu	37	chr19	23542876	23542876	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	aaaagctttgccacattcttCacatttgtagggtttctctc	6	10	3	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	23542876	23542876	C	T	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2905	p.E969K	0.067	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	82	0	0	42	33	44	-	-	-	T	23542876	C	T	23542876	3	4	606	1	0	0	0	0	1	0	0	0	18293	835	29	2	674	2	ZNF91	19	23542876	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	3407730	23542876	35586107	85	53132										
CHST8	0	genome.wustl.edu	37	chr19	34180251	34180251	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gctgcaggcctcctcctcttCatcagcctgcaggaccctac	8	18	3	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	34180251	34180251	C	T	SNP	CHST8	ENST00000262622	human	ensembl	69_37n	1	known	silent	c.84	p.F28	0.993	NULL	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302	32	0	0	11	13	54.17	-	-	-	T	34180251	C	T	34180251	2	4	606	1	0	0	0	0	0	0	0	1	3439	825	29	2		2	CHST8	19	34180251	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	10637375	34180251	24948732	86	53133										
NPHS1	0	genome.wustl.edu	37	chr19	36332657	36332657	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttggtttggtccgagccaagGgcgttggtggctgtacatgt	16	7	0	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	36332657	36332657	G	T	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	silent	c.2775	p.A925	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	156	0	0	95	24	20.17	-	-	-	T	36332657	G	T	36332657	2	4	606	1	0	0	0	0	0	0	0	1	10654	1219	43	4		4	NPHS1	19	36332657	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	2152406	36332657	22796326	87	53134										
SPTBN4	0	genome.wustl.edu	37	chr19	41066253	41066253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ttccacagccaagtccgcgaCctgctctcctggatggatgg	11	14	1	0			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	41066253	41066253	C	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.5859	p.D1953E	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	13	0	0	9	4	30.77	-	-	-	A	41066253	C	A	41066253	3	1	606	1	0	0	0	0	1	0	0	0	15212	506	18	4	5961	4	SPTBN4	19	41066253	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	4733596	41066253	18062730	88	53135										
SYT3	0	genome.wustl.edu	37	chr19	51135658	51135658	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcccccctcagagggcagctCaggggatgtttggctcggtt	14	12	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	51135658	51135658	C	A	SNP	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	nonsense	c.559	p.E187*	0.955	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	19	0	0	11	12	52.17	-	-	-	A	51135658	C	A	51135658	4	1	606	1	0	0	0	0	0	1	0	0	15567	835	29	2	1241	2	SYT3	19	51135658	Nonsense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	10069405	51135658	7993325	89	53136										
RRBP1	0	genome.wustl.edu	37	chr20	17640650	17640650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tgggagcagtttccaagatgGcagccttcgaagtgagaacc	13	9	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	17640650	17640650	G	T	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.503	p.A168D	0.995	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	132	0	0	44	63	58.88	-	-	-	T	17640650	G	T	17640650	3	4	606	1	0	0	0	0	1	0	0	0	13764	1203	42	4	2526	4	RRBP1	20	17640650	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		17640650	45384870	90	53137										
CHD6	0	genome.wustl.edu	37	chr20	40043946	40043946	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tctcttctgaggcttccattGacaatctgtccagtcacagg	8	12	4	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	40043946	40043946	G	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.6819	p.V2273	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	105	0	0	59	39	39	-	-	-	C	40043946	G	C	40043946	2	2	606	1	0	0	0	0	0	0	0	1	3358	1277	45	2		2	CHD6	20	40043946	Silent	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	22403296	40043946	22981574	91	53138										
CDH22	0	genome.wustl.edu	37	chr20	44869708	44869708	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	atgaactccgactcgggctcCagtaggcggttggtggcgcg	16	11	0	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	44869708	44869708	C	T	SNP	CDH22	ENST00000372262	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	44	0	0	20	14	41.18	-	-	-	T	44869708	C	T	44869708	2	4	606	1	0	0	0	0	0	0	0	1	3136	581	21	4		4	CDH22	20	44869708	Silent	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	4825762	44869708	18155812	92	53139										
ZNF831	0	genome.wustl.edu	37	chr20	57768189	57768189	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	ctggaggcctccttggtgacTgaacccactaagcatgggga	13	11	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	57768189	57768189	T	G	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	silent	c.2115	p.T705	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	33	0	0	17	11	39.29	-	-	-	G	57768189	T	G	57768189	2	3	606	1	0	0	0	0	0	0	0	1	18278	1567	55	5		5	ZNF831	20	57768189	Silent	SNP	T	TCGA-BH-A1FN-01A-11D-A13L-09	12898481	57768189	5257331	93	53140										
PWP2	0	genome.wustl.edu	37	chr21	45542081	45542081	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tggctgtgacttttcgccctGatggtgcggagctggctgtg	16	9	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	21	45542081	45542081	G	C	SNP	PWP2	ENST00000291576	human	ensembl	69_37n	1	known	missense	c.1660	p.D554H	0.997	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945	97	0	0	71	24	25.26	-	-	-	C	45542081	G	C	45542081	3	2	606	1	0	0	0	0	1	0	0	0	12927	1290	45	2	1714	2	PWP2	21	45542081	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		45542081	2587814	94	53141										
ARVCF	0	genome.wustl.edu	37	chr22	19966462	19966462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tgaagacagttgtccactcgGcgtcccgtggcttggagtcc	13	12	0	2			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	22	19966462	19966462	G	T	SNP	ARVCF	ENST00000263207	human	ensembl	69_37n	-1	known	missense	c.1538	p.A513D	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889	74	0	0	39	30	43.48	-	-	-	T	19966462	G	T	19966462	3	4	606	1	0	0	0	0	1	0	0	0	1007	1203	42	4	1402	4	ARVCF	22	19966462	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09		19966462	31338104	95	53142										
CHKB	0	genome.wustl.edu	37	chr22	51019010	51019010	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	tcacctgaggttgcccatctCatccttcaggctgtacatct	7	14	4	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	22	51019010	51019010	C	A	SNP	CHKB	ENST00000406938	human	ensembl	69_37n	-1	known	nonsense	c.661	p.E221*	0.995	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288	150	0	0	44	21	32.31	-	-	-	A	51019010	C	A	51019010	4	1	606	1	0	0	0	0	0	1	0	0	3377	835	29	2	554	2	CHKB	22	51019010	Nonsense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09	31052548	51019010	285556	96	53143										
DMD	0	genome.wustl.edu	37	chrX	32380914	32380914	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	gatcttcctacctttccagtCttaattctgtgtgaaatggc	7	10	3	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	32380914	32380914	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5316	p.K1772N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	151	0	0	91	65	41.4	-	-	-	G	32380914	C	G	32380914	3	3	606	1	0	0	0	0	1	0	0	0	4616	912	32	2	6061	2	DMD	23	32380914	Missense_Mutation	SNP	C	TCGA-BH-A1FN-01A-11D-A13L-09		32380914	122889646	97	53144										
ARR3	0	genome.wustl.edu	37	chrX	69496109	69496110	+	Frame_Shift_Del	DEL	AT	AT	-													0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	actgcacaagctaggggacaAtgcctacccctttaccctgc							TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	69496109	69496110	AT	-	DEL	ARR3	ENST00000307959	human	ensembl	69_37n	1	known	frame_shift_del	c.323_324	p.N108fs	0.998:0.997	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500	119	0	0	55	21	27.63	-	-	-	-	69496110	AT	-	69496109	7	5	606	1	0	1	0	1	0	0	0	0	983	101	4	0	341	0	ARR3	23	69496109	Frame_Shift_Del	DEL	AT	TCGA-BH-A1FN-01A-11D-A13L-09	37115195	69496109	85774451	98	53145										
ARL13A	0	genome.wustl.edu	37	chrX	100229143	100229143	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	accatccctatcattggcttGaacaactctggcaaaactgt	6	12	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	100229143	100229143	G	C	SNP	ARL13A	ENST00000450457	human	ensembl	69_37n	1	known	missense	c.87	p.L29F	0.013	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL13A	HGNC	ENSG00000174225	161	0	0	89	77	37.56	-	-	-	C	100229143	G	C	100229143	3	2	606	1	0	0	0	0	1	0	0	0	930	1281	45	2	93	2	ARL13A	23	100229143	Missense_Mutation	SNP	G	TCGA-BH-A1FN-01A-11D-A13L-09	30733034	100229143	55041417	99	53146										
DOCK11	0	genome.wustl.edu	37	chrX	117722098	117722098	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	40	5.05503419986581e-14	3.71163867979155	5.0683066110257	2.64830435531072	0.137129931526677	0.62934362934363	29	cctgtttttttccctgctatAgattgtattacttcttcata	4	9	2	1			TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	117722098	117722098	A	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	splice_site	c.1796-2	e17-2	1.000	-	-	-	no_errors	DOCK11	HGNC	ENSG00000147251	157	0	0	131	25	16.03	-	-	-	T	117722098	A	T	117722098	5	4	606	1	0	0	0	0	0	0	1	0	4721	434	15	5	1860	5	DOCK11	23	117722098	Splice_Site	SNP	A	TCGA-BH-A1FN-01A-11D-A13L-09	17492955	117722098	37548462	100	53147										
SULT1C2	0	genome.wustl.edu	37	chr2	108921678	108921678	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	aaggatggtgggagatgaaaGacagacaccagattctcttc	12	7	1	5			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	2	108921678	108921678	G	A	SNP	SULT1C2	ENST00000326853	human	ensembl	69_37n	1	known	missense	c.586	p.D196N	0.934	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1C2	HGNC	ENSG00000198203	157	0	0	229	107	31.75	-	-	-	A	108921678	G	A	108921678	3	1	607	1	0	0	0	0	1	0	0	0	15468	942	33	2	670	2	SULT1C2	2	108921678	Missense_Mutation	SNP	G	TCGA-BH-A1FR-01A-11D-A13L-09		108921678	134277695	1	53148										
IDH1	0	genome.wustl.edu	37	chr2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	ttgatccccataagcatgacGacctatgatgataggtttta	8	8	0	4			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	2	209113113	209113113	G	A	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.394	p.R132C	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	50	0	0	48	20	28.57	-	-	-	A	209113113	G	A	209113113	3	1	607	1	0	0	0	0	1	0	0	0	7548	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-BH-A1FR-01A-11D-A13L-09	100191435	209113113	34086260	2	53149										
VPS52	0	genome.wustl.edu	37	chr6	33231274	33231274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	cccctacctgtgtccgagcaTtgagcagctgctggaagctc	11	14	0	1			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	6	33231274	33231274	T	C	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	missense	c.1781	p.N594S	1.000	pfam_Vps52	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	100	0	0	72	41	36.28	-	-	-	C	33231274	T	C	33231274	3	2	607	1	0	0	0	0	1	0	0	0	17311	1493	52	5	406	5	VPS52	6	33231274	Missense_Mutation	SNP	T	TCGA-BH-A1FR-01A-11D-A13L-09		33231274	137883793	3	53150										
VWF	0	genome.wustl.edu	37	chr12	6167090	6167090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	gtccccgtgcagcttccaggCgttcccgaagtcctccaccc	9	19	0	0			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	12	6167090	6167090	C	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.1654	p.A552T	0.143	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	12	0	0	7	4	36.36	-	-	-	T	6167090	C	T	6167090	3	4	607	1	0	0	0	0	1	0	0	0	17343	768	27	1	6943	1	VWF	12	6167090	Missense_Mutation	SNP	C	TCGA-BH-A1FR-01A-11D-A13L-09		6167090	127684805	4	53151										
POSTN	0	genome.wustl.edu	37	chr13	38154780	38154780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	gcggaatatgtgaatcgcacCgtttctcccttgcttactcc	8	13	1	1			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	13	38154780	38154780	C	T	SNP	POSTN	ENST00000379747	human	ensembl	69_37n	-1	known	missense	c.1447	p.G483S	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	169	0	0	268	85	24.08	-	-	-	T	38154780	C	T	38154780	3	4	607	1	0	0	0	0	1	0	0	0	12333	652	23	1	1115	1	POSTN	13	38154780	Missense_Mutation	SNP	C	TCGA-BH-A1FR-01A-11D-A13L-09		38154780	77015098	5	53152										
GLCE	0	genome.wustl.edu	37	chr15	69553426	69553426	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	tttgtttctctattttatagGtgtgccattatctacacaat	5	7	2	0			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	15	69553426	69553426	G	T	SNP	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	missense	c.587	p.G196V	1.000	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	26	0	0	40	15	27.27	-	-	-	T	69553426	G	T	69553426	3	4	607	1	0	0	0	0	1	0	0	0	6484	1275	44	4	593	4	GLCE	15	69553426	Missense_Mutation	SNP	G	TCGA-BH-A1FR-01A-11D-A13L-09		69553426	32977966	6	53153										
SOLH	0	genome.wustl.edu	37	chr16	602903	602903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	ctactacctgacacacggttGggcggggctcatcgtggtgg	15	11	1	1			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	16	602903	602903	G	T	SNP	SOLH	ENST00000219611	human	ensembl	69_37n	1	known	missense	c.2945	p.W982L	1.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	SOLH	HGNC	ENSG00000103326	14	0	0	13	8	38.1	-	-	-	T	602903	G	T	602903	3	4	607	1	0	0	0	0	1	0	0	0	15014	1357	47	4	2983	4	SOLH	16	602903	Missense_Mutation	SNP	G	TCGA-BH-A1FR-01A-11D-A13L-09		602903	89751850	7	53154										
CCL3L1	0	genome.wustl.edu	37	chr17	34624285	34624285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	actcagctccaggtcactgaCgtatttctggacccactcct	7	15	3	1			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	17	34624285	34624285	C	T	SNP	CCL3L1	ENST00000422211	human	ensembl	69_37n	-1	known	missense	c.256	p.V86I	0.001	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL3L1	HGNC	ENSG00000205021	26	0	0	14	12	46.15	-	-	-	T	34624285	C	T	34624285	3	4	607	1	0	0	0	0	1	0	0	0	2929	536	19	1	323	1	CCL3L1	17	34624285	Missense_Mutation	SNP	C	TCGA-BH-A1FR-01A-11D-A13L-09		34624285	46570925	8	53155										
ZNF24	0	genome.wustl.edu	37	chr18	32919834	32919834	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	gctcccaggatgcccacttgAgctggttctccacagcatca	9	15	2	1			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	18	32919834	32919834	A	C	SNP	ZNF24	ENST00000261332	human	ensembl	69_37n	-1	known	missense	c.527	p.L176R	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF24	HGNC	ENSG00000172466	61	0	0	35	28	44.44	-	-	-	C	32919834	A	C	32919834	3	2	607	1	0	0	0	0	1	0	0	0	17888	304	11	5	587	5	ZNF24	18	32919834	Missense_Mutation	SNP	A	TCGA-BH-A1FR-01A-11D-A13L-09		32919834	45157414	9	53156										
HIPK4	0	genome.wustl.edu	37	chr19	40889792	40889792	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	tggtgggccttgcaggcggcGtgcaacaggtgtggcttggg	20	8	0	0			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	19	40889792	40889792	G	A	SNP	HIPK4	ENST00000291823	human	ensembl	69_37n	-1	known	silent	c.720	p.H240	0.098	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396	79	0	0	43	25	36.76	-	-	-	A	40889792	G	A	40889792	2	1	607	1	0	0	0	0	0	0	0	1	7170	1136	40	1		1	HIPK4	19	40889792	Silent	SNP	G	TCGA-BH-A1FR-01A-11D-A13L-09		40889792	18239191	10	53157										
SSTR3	0	genome.wustl.edu	37	chr22	37603605	37603605	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	1	0.849235287128748	1.45833333333333	NA	1.45833333333333	1	1	0	caggttgaggatgtagacgtTggtgactgaagggctggccg	18	6	0	4			TCGA-BH-A1FR-01A-11D-A13L-09	TCGA-BH-A1FR-11B-42D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a589f5ac-105c-45d6-96e1-55e3080f999c	045b30c4-c077-4bbd-b538-7fcf73440b94	22	37603605	37603605	T	A	SNP	SSTR3	ENST00000328544	human	ensembl	69_37n	-1	known	missense	c.238	p.N80Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_3,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473	24	0	0	27	21	43.75	-	-	-	A	37603605	T	A	37603605	3	1	607	1	0	0	0	0	1	0	0	0	15290	1812	63	5	1022	5	SSTR3	22	37603605	Missense_Mutation	SNP	T	TCGA-BH-A1FR-01A-11D-A13L-09		37603605	13700961	11	53158										
MRPL20	0	genome.wustl.edu	37	chr1	1337496	1337496	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	accactctggaaaaaatgccTtcaggttccttcccatcccc	5	16	2	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	1337496	1337496	T	G	SNP	MRPL20	ENST00000344843	human	ensembl	69_37n	-1	known	missense	c.417	p.E139D	0.015	NULL	pfam_Ribosomal_L20,prints_Ribosomal_L20,tigrfam_Ribosomal_L20	-	no_errors	MRPL20	HGNC	ENSG00000242485	30	0	0	83	14	14.43	-	-	-	G	1337496	T	G	1337496	3	3	608	1	0	0	0	0	1	0	0	0	9858	1606	56	5	36	5	MRPL20	1	1337496	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09		1337496	247913125	1	53159										
PRDM16	0	genome.wustl.edu	37	chr1	3329041	3329041	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gagccaaagtcaccccgggaCgccctcaaggtgggcggccc	14	16	2	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	3329041	3329041	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	1	known	silent	c.2280	p.D760	0.995	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	8	0	0	21	7	25	-	-	-	T	3329041	C	T	3329041	2	4	608	1	0	0	0	0	0	0	0	1	12538	535	19	1		1	PRDM16	1	3329041	Silent	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09	1991545	3329041	245921580	2	53160										
THRAP3	0	genome.wustl.edu	37	chr1	36751975	36751975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	cctttccattccagttctagGtctcgttccagatcatattc	5	13	3	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	36751975	36751975	G	C	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.144	p.R48S	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	36	0	0	66	9	12	-	-	-	C	36751975	G	C	36751975	3	2	608	1	0	0	0	0	1	0	0	0	15969	1252	44	4	150	4	THRAP3	1	36751975	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09	33422934	36751975	212498646	3	53161										
SPTA1	0	genome.wustl.edu	37	chr1	158637768	158637768	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	ctcttggccagttttctgtaTgttttccagctgggtcttat	9	9	3	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	158637768	158637768	T	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1918	p.I640L	0.075	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	123	1	0.81	220	52	19.12	-	-	-	G	158637768	T	G	158637768	3	3	608	1	0	0	0	0	1	0	0	0	15207	1464	51	5	5493	5	SPTA1	1	158637768	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09	121885793	158637768	90612853	4	53162										
F11R	0	genome.wustl.edu	37	chr1	160969973	160969973	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gattcaggacataggaagagTtgctgaaggcacgggtgctt	15	6	1	2			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	160969973	160969973	T	C	SNP	F11R	ENST00000436182	human	ensembl	69_37n	-1	known	missense	c.566	p.N189S	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	F11R	HGNC	ENSG00000158769	81	0	0	141	17	10.76	-	-	-	C	160969973	T	C	160969973	3	2	608	1	0	0	0	0	1	0	0	0	5375	1725	60	5	369	5	F11R	1	160969973	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09	2332205	160969973	88280648	5	53163										
SERTAD4	0	genome.wustl.edu	37	chr1	210415429	210415429	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tgtcactaatgtcagatcacTtggtgttcaggaaaaggcca	10	8	4	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	1	210415429	210415429	T	C	SNP	SERTAD4	ENST00000367012	human	ensembl	69_37n	1	known	missense	c.818	p.L273P	0.686	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497	43	0	0	108	17	13.6	-	-	-	C	210415429	T	C	210415429	3	2	608	1	0	0	0	0	1	0	0	0	14211	1609	56	5	828	5	SERTAD4	1	210415429	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09	49445456	210415429	38835192	6	53164										
HECW2	0	genome.wustl.edu	37	chr2	197105255	197105255	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	cataatctgattaaaagcatCttctagtaagtgatctcttc	5	8	4	2			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	2	197105255	197105255	C	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.3682	p.D1228Y	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	79	0	0	129	16	11.03	-	-	-	A	197105255	C	A	197105255	3	1	608	1	0	0	0	0	1	0	0	0	7094	913	32	2	1072	2	HECW2	2	197105255	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		197105255	46094118	7	53165										
EOMES	0	genome.wustl.edu	37	chr3	27760081	27760081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	ataaaagctgcacttacgaaTcatagttgtctctgaagcct	7	9	2	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	3	27760081	27760081	T	C	SNP	EOMES	ENST00000449599	human	ensembl	69_37n	-1	known	missense	c.1376	p.D459G	1.000	superfamily_p53-like_TF_DNA-bd,smart_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	55	0	0	113	15	11.72	-	-	-	C	27760081	T	C	27760081	3	2	608	1	0	0	0	0	1	0	0	0	5184	1435	50	5	692	5	EOMES	3	27760081	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09		27760081	170262349	8	53166										
RAPGEF6	0	genome.wustl.edu	37	chr5	130857147	130857147	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tgctacaaccagactgactaGaagacacatgagtcacctgt	8	11	1	5			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	5	130857147	130857147	G	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.563	p.S188C	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	45	0	0	84	12	12.5	-	-	-	C	130857147	G	C	130857147	3	2	608	1	0	0	0	0	1	0	0	0	13131	942	33	2	4816	2	RAPGEF6	5	130857147	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09		130857147	50058113	9	53167										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769344	140769344	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	cgcacagcgcgtgccttaggCgacagggacgccgtccgcca	14	16	0	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	5	140769344	140769344	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	silent	c.1893	p.G631	0.426	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	25	0	0	111	17	13.28	-	-	-	T	140769344	C	T	140769344	2	4	608	1	0	0	0	0	0	0	0	1	11638	755	27	1		1	PCDHGB4	5	140769344	Silent	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09	9912197	140769344	40145916	10	53168										
DNAH8	0	genome.wustl.edu	37	chr6	38816466	38816466	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	aatatccagaattgggtgtaTaaattgtccacttcctcaga	7	8	1	2			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	6	38816466	38816466	T	A	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	nonsense	c.4437	p.Y1479*	0.730	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	64	0	0	127	25	16.45	-	-	-	A	38816466	T	A	38816466	4	1	608	1	0	0	0	0	0	1	0	0	4642	1413	49	5	4567	5	DNAH8	6	38816466	Nonsense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09		38816466	132298601	11	53169										
BAZ1B	0	genome.wustl.edu	37	chr7	72856553	72856554	+	Frame_Shift_Ins	INS	-	-	T													0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tctgtcttcgtcccctggacINStgtccaacggcctctggctc							TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	7	72856553	72856554	-	T	INS	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4425_4424	p.S1476fs	0.998:0.999	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	24	0	0	76	15	16.48	-	-	-	T	72856554	-	T	72856553	7	5	608	1	0	1	1	0	0	0	0	0	1334	564	20	0	30	0	BAZ1B	7	72856553	Frame_Shift_Ins	INS	-	TCGA-BH-A1FU-01A-11D-A14G-09		72856553	86282110	12	53170										
RAD54B	0	genome.wustl.edu	37	chr8	95403934	95403934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tttccaacaacccttgaaggCagaacctgacaacctgagaa	7	12	0	4			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	8	95403934	95403934	C	T	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.1712	p.C571Y	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	28	0	0	77	22	22.22	-	-	-	T	95403934	C	T	95403934	3	4	608	1	0	0	0	0	1	0	0	0	13075	710	25	4	1044	4	RAD54B	8	95403934	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		95403934	50960088	13	53171										
FIBIN	0	genome.wustl.edu	37	chr11	27016367	27016367	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gaggatgctgggcgcgtgctGgagggcatcagcaaaagcat	17	8	1	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	11	27016367	27016367	G	T	SNP	FIBIN	ENST00000318627	human	ensembl	69_37n	1	known	silent	c.294	p.L98	1.000	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971	18	0	0	42	13	23.64	-	-	-	T	27016367	G	T	27016367	2	4	608	1	0	0	0	0	0	0	0	1	5931	1335	47	4		4	FIBIN	11	27016367	Silent	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09		27016367	107990149	14	53172										
CNPY2	0	genome.wustl.edu	37	chr12	56705098	56705098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	ctacacgtacgtagttcttgCgatgggtggaaggatcaatc	12	8	2	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	12	56705098	56705098	C	T	SNP	CNPY2	ENST00000273308	human	ensembl	69_37n	-1	known	missense	c.305	p.R102H	1.000	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	-	no_errors	CNPY2	HGNC	ENSG00000257727	82	0	0	183	29	13.68	-	-	-	T	56705098	C	T	56705098	3	4	608	1	0	0	0	0	1	0	0	0	3658	768	27	1	255	1	CNPY2	12	56705098	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		56705098	77146797	15	53173										
NT5DC3	0	genome.wustl.edu	37	chr12	104208797	104208797	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	aataaaacaccaaggtgtaaTcataatcgaagccatagatt	6	7	1	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	12	104208797	104208797	T	A	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	missense	c.311	p.D104V	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696	68	0	0	107	18	14.4	-	-	-	A	104208797	T	A	104208797	3	1	608	1	0	0	0	0	1	0	0	0	10765	1435	50	5	1387	5	NT5DC3	12	104208797	Missense_Mutation	SNP	T	TCGA-BH-A1FU-01A-11D-A14G-09	47503699	104208797	29643098	16	53174										
SLC25A30	0	genome.wustl.edu	37	chr13	45983070	45983070	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	aggcctactcaccccgagtaGagtgctttcagcccttcttc	8	15	3	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	13	45983070	45983070	G	A	SNP	SLC25A30	ENST00000519676	human	ensembl	69_37n	-1	known	silent	c.204	p.L68	0.996	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A30	HGNC	ENSG00000174032	66	0	0	129	19	12.84	-	-	-	A	45983070	G	A	45983070	2	1	608	1	0	0	0	0	0	0	0	1	14583	929	33	2		2	SLC25A30	13	45983070	Silent	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09		45983070	69186808	17	53175										
TEP1	0	genome.wustl.edu	37	chr14	20871929	20871929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tctcttggcccggtgcttccGagggttgtacttagccagct	12	12	1	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	14	20871929	20871929	G	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.1147	p.R383W	0.999	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	47	0	0	75	9	10.71	-	-	-	A	20871929	G	A	20871929	3	1	608	1	0	0	0	0	1	0	0	0	15854	1057	37	1	6936	1	TEP1	14	20871929	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09		20871929	86477611	18	53176										
HIRIP3	0	genome.wustl.edu	37	chr16	30005704	30005704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gttctgggtttccaatccccCttttcctcatcctcttcttt	4	15	4	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	16	30005704	30005704	C	A	SNP	HIRIP3	ENST00000279392	human	ensembl	69_37n	-1	known	missense	c.762	p.K254N	0.001	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929	101	0	0	262	34	11.45	-	-	-	A	30005704	C	A	30005704	3	1	608	1	0	0	0	0	1	0	0	0	7172	680	24	4	924	4	HIRIP3	16	30005704	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		30005704	60349049	19	53177										
CORO1A	0	genome.wustl.edu	37	chr16	30198152	30198152	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tgcaggtgtgggagatcccaGatgggggcctgatgctgccc	17	10	0	3			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	16	30198152	30198152	G	C	SNP	CORO1A	ENST00000219150	human	ensembl	69_37n	1	known	missense	c.337	p.D113H	0.999	pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879	15	0	0	50	11	18.03	-	-	-	C	30198152	G	C	30198152	3	2	608	1	0	0	0	0	1	0	0	0	3783	942	33	2	347	2	CORO1A	16	30198152	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09	192448	30198152	60156601	20	53178										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	25	0	0	63	19	23.17	-	-	-	T	7578406	C	T	7578406	3	4	608	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		7578406	73616804	21	53179										
GRIN2C	0	genome.wustl.edu	37	chr17	72850911	72850911	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	tgggaggagatgaagtcaagGatctgggccaccgcctcggt	16	9	2	2			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	17	72850911	72850911	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	silent	c.321	p.I107	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	27	0	0	92	14	13.21	-	-	-	A	72850911	G	A	72850911	2	1	608	1	0	0	0	0	0	0	0	1	6832	1164	41	2		2	GRIN2C	17	72850911	Silent	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09	65272505	72850911	8344299	22	53180										
TIMM50	0	genome.wustl.edu	37	chr19	39973556	39973556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gtggacgaaaatggtgccaaGgtgagggggaaagagaccga	18	5	0	2			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	19	39973556	39973556	G	A	SNP	TIMM50	ENST00000544017	human	ensembl	69_37n	1	known	missense	c.11	p.R4K	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197	41	0	0	63	10	13.7	-	-	-	A	39973556	G	A	39973556	3	1	608	1	0	0	0	0	1	0	0	0	16008	1014	35	4	610	4	TIMM50	19	39973556	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09		39973556	19155427	23	53181										
SYMPK	0	genome.wustl.edu	37	chr19	46341822	46341822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	ctgaggccttcgaggtccccGacgggcctggctccaagtct	13	15	1	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	19	46341822	46341822	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.1139	p.S380L	0.191	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	27	0	0	70	11	13.58	-	-	-	A	46341822	G	A	46341822	3	1	608	1	0	0	0	0	1	0	0	0	15531	1059	37	1	2757	1	SYMPK	19	46341822	Missense_Mutation	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09	6368266	46341822	12787161	24	53182										
CGB	0	genome.wustl.edu	37	chr19	49526242	49526242	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gaagaggagtcctggaagcgGgggtcatcacaggtcaaggg	18	7	3	1			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	19	49526242	49526242	G	C	SNP	CGB	ENST00000357383	human	ensembl	69_37n	-1	known	silent	c.399	p.P133	0.721	NULL	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB	HGNC	ENSG00000104827	28	0	0	47	14	22.95	-	-	-	C	49526242	G	C	49526242	2	2	608	1	0	0	0	0	0	0	0	1	3325	1219	43	4		4	CGB	19	49526242	Silent	SNP	G	TCGA-BH-A1FU-01A-11D-A14G-09	3184420	49526242	9602741	25	53183										
SSTR4	0	genome.wustl.edu	37	chr20	23016467	23016467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.649208061102233	1.5041095890411	3.76027397260274	0.683686176836862	1	1	0	gcgccactggcccttcggctCcgtgctgtgccgcgcggtgc	15	17	0	0			TCGA-BH-A1FU-01A-11D-A14G-09	TCGA-BH-A1FU-11A-23D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9efd4bfb-d4e4-487e-8d1c-a19c2d62e3cf	ff70699f-0fd1-4c30-9e3f-76c239c2da8c	20	23016467	23016467	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	missense	c.347	p.S116F	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	23	0	0	101	22	17.89	-	-	-	T	23016467	C	T	23016467	3	4	608	1	0	0	0	0	1	0	0	0	15291	855	30	2	349	2	SSTR4	20	23016467	Missense_Mutation	SNP	C	TCGA-BH-A1FU-01A-11D-A14G-09		23016467	40009053	26	53184										
TNFRSF9	0	genome.wustl.edu	37	chr1	7980932	7980932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	cttcttcttcttctggaaatCggcagctacagccatcttcc	6	14	5	0			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	1	7980932	7980932	C	T	SNP	TNFRSF9	ENST00000377507	human	ensembl	69_37n	-1	known	missense	c.731	p.R244Q	0.858	prints_TNFR_9	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	160	0	0	185	60	24.49	-	-	-	T	7980932	C	T	7980932	3	4	609	1	0	0	0	0	1	0	0	0	16395	884	31	1	40	1	TNFRSF9	1	7980932	Missense_Mutation	SNP	C	TCGA-BH-A201-01A-11D-A14K-09		7980932	241269689	1	53185										
XDH	0	genome.wustl.edu	37	chr2	31588379	31588379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	tatcagcatgtcctcatcacGgtccagcatgcatcgcacag	8	14	3	0			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	31588379	31588379	G	A	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.2488	p.R830C	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	115	0	0	96	31	24.41	-	-	-	A	31588379	G	A	31588379	3	1	609	1	0	0	0	0	1	0	0	0	17523	1116	39	1	1569	1	XDH	2	31588379	Missense_Mutation	SNP	G	TCGA-BH-A201-01A-11D-A14K-09		31588379	211610994	2	53186										
NUP35	0	genome.wustl.edu	37	chr2	184023015	184023015	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	gttttattctttgcagatgtCtaatacaggaaattggatgc	9	5	2	1			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	184023015	184023015	C	A	SNP	NUP35	ENST00000295119	human	ensembl	69_37n	1	known	missense	c.614	p.S205Y	1.000	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002	86	0	0	124	26	17.33	-	-	-	A	184023015	C	A	184023015	3	1	609	1	0	0	0	0	1	0	0	0	10836	913	32	2	640	2	NUP35	2	184023015	Missense_Mutation	SNP	C	TCGA-BH-A201-01A-11D-A14K-09	152434636	184023015	59176358	3	53187										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	91	0	0	88	27	23.48	-	-	-	C	198266834	T	C	198266834	3	2	609	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-BH-A201-01A-11D-A14K-09	14243819	198266834	44932539	4	53188										
GPR55	0	genome.wustl.edu	37	chr2	231775625	231775625	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	caaactgtagggttttcatcAgctcgttgacaccgtcaaac	8	11	3	1			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	231775625	231775625	A	G	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	missense	c.53	p.L18P	0.528	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	89	0	0	63	22	25.88	-	-	-	G	231775625	A	G	231775625	3	3	609	1	0	0	0	0	1	0	0	0	6749	188	7	5	910	5	GPR55	2	231775625	Missense_Mutation	SNP	A	TCGA-BH-A201-01A-11D-A14K-09	33508791	231775625	11423748	5	53189										
LAMC3	0	genome.wustl.edu	37	chr9	133917083	133917083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	tgacccccgcagtgggcgctGcccctgcaaagagaatgtgg	14	13	0	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	9	133917083	133917083	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	1	known	missense	c.1343	p.C448Y	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	63	0	0	69	20	22.47	-	-	-	A	133917083	G	A	133917083	3	1	609	1	0	0	0	0	1	0	0	0	8670	1319	46	4	1369	4	LAMC3	9	133917083	Missense_Mutation	SNP	G	TCGA-BH-A201-01A-11D-A14K-09		133917083	7296348	6	53190										
DDX21	0	genome.wustl.edu	37	chr10	70737326	70737326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	cactgccattagtcacttcaAacaatcagctgagaagctga	7	11	3	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	10	70737326	70737326	A	G	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	1	known	missense	c.1784	p.K595R	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	134	0	0	122	43	26.06	-	-	-	G	70737326	A	G	70737326	3	3	609	1	0	0	0	0	1	0	0	0	4380	14	1	5	1830	5	DDX21	10	70737326	Missense_Mutation	SNP	A	TCGA-BH-A201-01A-11D-A14K-09		70737326	64797421	7	53191										
SIK3	0	genome.wustl.edu	37	chr11	116766967	116766967	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	tgtgtgctagcgactcccttAcctgtggacataaaaaatgg	10	9	0	0			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	11	116766967	116766967	A	G	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	splice_site	c.865+2	e6+2	1.000	-	-	-	no_errors	SIK3	HGNC	ENSG00000160584	98	0	0	69	32	31.37	-	-	-	G	116766967	A	G	116766967	5	3	609	1	0	0	0	0	0	0	1	0	14408	405	14	5	3170	5	SIK3	11	116766967	Splice_Site	SNP	A	TCGA-BH-A201-01A-11D-A14K-09		116766967	18239549	8	53192										
TARSL2	0	genome.wustl.edu	37	chr15	102263346	102263346	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	cttctttttcatgtccttgtCttggctttgactaggaggag	10	8	3	1			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	15	102263346	102263346	C	T	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	missense	c.319	p.D107N	0.618	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	330	1	0.3	329	116	26.07	-	-	-	T	102263346	C	T	102263346	3	4	609	1	0	0	0	0	1	0	0	0	15653	913	32	2	2161	2	TARSL2	15	102263346	Missense_Mutation	SNP	C	TCGA-BH-A201-01A-11D-A14K-09		102263346	268046	9	53193										
KIAA0430	0	genome.wustl.edu	37	chr16	15702158	15702158	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	aaacatttaccttcacgacaTggcagagtttctgagttaaa	7	8	2	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	16	15702158	15702158	T	C	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.4172	p.H1391R	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	62	0	0	52	22	29.73	-	-	-	C	15702158	T	C	15702158	3	2	609	1	0	0	0	0	1	0	0	0	8229	1464	51	5	1084	5	KIAA0430	16	15702158	Missense_Mutation	SNP	T	TCGA-BH-A201-01A-11D-A14K-09		15702158	74652595	10	53194										
RALBP1	0	genome.wustl.edu	37	chr18	9524597	9524597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	atctttttttcttagatcagCaatcgagtcctgtatgtgtt	7	7	3	1			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	18	9524597	9524597	C	T	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	1	known	silent	c.1059	p.S353	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	114	0	0	83	48	36.64	-	-	-	T	9524597	C	T	9524597	2	4	609	1	0	0	0	0	0	0	0	1	13095	709	25	4		4	RALBP1	18	9524597	Silent	SNP	C	TCGA-BH-A201-01A-11D-A14K-09		9524597	68552651	11	53195										
DPM1	0	genome.wustl.edu	37	chr20	49575041	49575041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	gagacctgcgaggactacgaCtgacttccaaggaggccatg	13	11	0	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	20	49575041	49575041	C	T	SNP	DPM1	ENST00000371582	human	ensembl	69_37n	-1	known	missense	c.20	p.S7N	0.000	NULL	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419	67	0	0	65	27	29.35	-	-	-	T	49575041	C	T	49575041	3	4	609	1	0	0	0	0	1	0	0	0	4759	565	20	4	798	4	DPM1	20	49575041	Missense_Mutation	SNP	C	TCGA-BH-A201-01A-11D-A14K-09		49575041	13450479	12	53196										
PRKX	0	genome.wustl.edu	37	chrX	3544506	3544506	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	gaaatctattttgcctgcaaGaattttctgataaatgccaa	6	7	2	2			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	3544506	3544506	G	T	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.769	p.L257I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	422	0	0	395	158	28.57	-	-	-	T	3544506	G	T	3544506	3	4	609	1	0	0	0	0	1	0	0	0	12608	942	33	2	323	2	PRKX	23	3544506	Missense_Mutation	SNP	G	TCGA-BH-A201-01A-11D-A14K-09		3544506	151726054	13	53197										
ARHGEF9	0	genome.wustl.edu	37	chrX	62875545	62875545	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	gtcatcatctctgccatcctCaatgtcaactacctcatatt	3	14	6	0			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	62875545	62875545	C	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.1129	p.E377K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	331	0	0	373	46	10.98	-	-	-	T	62875545	C	T	62875545	3	4	609	1	0	0	0	0	1	0	0	0	914	835	29	2	433	2	ARHGEF9	23	62875545	Missense_Mutation	SNP	C	TCGA-BH-A201-01A-11D-A14K-09	59331039	62875545	92395015	14	53198										
ODZ1	0	genome.wustl.edu	37	chrX	123514548	123514548	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	ccttctgtccatgccctaatCccctcttccccctcttgcag	4	20	3	0			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	123514548	123514548	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.8037	p.G2679	0.001	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	264	0	0	305	112	26.86	-	-	-	G	123514548	C	G	123514548	2	3	609	1	0	0	0	0	0	0	0	1	10907	842	30	2		2	ODZ1	23	123514548	Silent	SNP	C	TCGA-BH-A201-01A-11D-A14K-09	60639003	123514548	31756012	15	53199										
PDZD4	0	genome.wustl.edu	37	chrX	153073934	153073934	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.827988076446844	1.2962962962963	0	1.66666666666667	0.428571428571429	1	0	tgcaggtcgtgacaggagctGtccccccggaggcgggggct	18	12	0	1			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	153073934	153073934	G	C	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.177	p.D59E	0.981	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	29	0	0	28	7	20	-	-	-	C	153073934	G	C	153073934	3	2	609	1	0	0	0	0	1	0	0	0	11776	1368	48	4	2160	4	PDZD4	23	153073934	Missense_Mutation	SNP	G	TCGA-BH-A201-01A-11D-A14K-09	29559386	153073934	2196626	16	53200										
MOV10	0	genome.wustl.edu	37	chr1	113231673	113231673	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	actcgaccgctgggccgacgTgcggttcccagaaaagagga	14	12	0	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	113231673	113231673	T	G	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.254	p.V85G	0.004	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	132	0	0	106	37	25.69	-	-	-	G	113231673	T	G	113231673	3	3	610	1	0	0	0	0	1	0	0	0	9790	1696	59	5	260	5	MOV10	1	113231673	Missense_Mutation	SNP	T	TCGA-BH-A202-01A-11D-A14K-09		113231673	136018948	1	53201										
SMG5	0	genome.wustl.edu	37	chr1	156237972	156237972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gcaaccttttaatgtctttaCatctgaaatgagaagagccc	7	9	2	3			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	156237972	156237972	C	T	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	missense	c.842	p.C281Y	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	190	1	0.52	214	160	42.78	-	-	-	T	156237972	C	T	156237972	3	4	610	1	0	0	0	0	1	0	0	0	14885	478	17	4	2264	4	SMG5	1	156237972	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09	43006299	156237972	93012649	2	53202										
USH2A	0	genome.wustl.edu	37	chr1	216219877	216219877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	cctttttgggtgggttccagGagagcagcaaagaactggga	15	7	0	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	216219877	216219877	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.6221	p.S2074Y	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	134	0	0	206	41	16.6	-	-	-	T	216219877	G	T	216219877	3	4	610	1	0	0	0	0	1	0	0	0	17133	1174	41	2	9551	2	USH2A	1	216219877	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09	59981905	216219877	33030744	3	53203										
SYNPR	0	genome.wustl.edu	37	chr3	63594947	63594947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	aaacagccatccaacaaatgCatggctatccacagccctgt	6	14	0	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	63594947	63594947	C	T	SNP	SYNPR	ENST00000478300	human	ensembl	69_37n	1	known	silent	c.555	p.C185	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630	267	0	0	253	139	35.46	-	-	-	T	63594947	C	T	63594947	2	4	610	1	0	0	0	0	0	0	0	1	15551	718	25	4		4	SYNPR	3	63594947	Silent	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		63594947	134427483	4	53204										
PLXNA1	0	genome.wustl.edu	37	chr3	126730837	126730837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	tgccctccacgcagatctacGtgccagtgggagtggtaaaa	12	11	1	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	126730837	126730837	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.2149	p.V717M	0.998	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	44	0	0	24	9	27.27	-	-	-	A	126730837	G	A	126730837	3	1	610	1	0	0	0	0	1	0	0	0	12193	1145	40	1	2183	1	PLXNA1	3	126730837	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09	63135890	126730837	71291593	5	53205										
DNAJC13	0	genome.wustl.edu	37	chr3	132166751	132166751	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	ttctctttcagagatttagaActgatttttcagagggaaaa	8	5	3	4			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	132166751	132166751	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.304	p.T102A	1.000	NULL	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	210	0	0	191	85	30.58	-	-	-	G	132166751	A	G	132166751	3	3	610	1	0	0	0	0	1	0	0	0	4667	43	2	5	318	5	DNAJC13	3	132166751	Missense_Mutation	SNP	A	TCGA-BH-A202-01A-11D-A14K-09	5435914	132166751	65855679	6	53206										
PIK3CA	0	genome.wustl.edu	37	chr3	178922325	178922325	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	aggtatctaccatggaggagAacccttatgtgacaatgtga	11	7	1	3			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	178922325	178922325	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1094	p.E365V	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	204	0	0	214	78	26.62	-	-	-	T	178922325	A	T	178922325	3	4	610	1	0	0	0	0	1	0	0	0	11987	246	9	5	1112	5	PIK3CA	3	178922325	Missense_Mutation	SNP	A	TCGA-BH-A202-01A-11D-A14K-09	46755574	178922325	19100105	7	53207										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	90	31	25.62	-	-	-	G	178952085	A	G	178952085	3	3	610	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A202-01A-11D-A14K-09	29760	178952085	19070345	8	53208										
ATXN1	0	genome.wustl.edu	37	chr6	16327705	16327705	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gggggccccagggtgagcgtGtgtgggatcatcgtctggtg	20	8	2	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	6	16327705	16327705	G	C	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.837	p.H279Q	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	56	0	0	18	12	40	-	-	-	C	16327705	G	C	16327705	3	2	610	1	0	0	0	0	1	0	0	0	1213	1368	48	4	1618	4	ATXN1	6	16327705	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		16327705	154787362	9	53209										
PPIL4	0	genome.wustl.edu	37	chr6	149847870	149847870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	caatttacacacaaacagtaCattttctggaggtttaatat	5	7	1	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	6	149847870	149847870	C	T	SNP	PPIL4	ENST00000253329	human	ensembl	69_37n	-1	known	missense	c.721	p.V241I	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013	161	0	0	167	40	19.32	-	-	-	T	149847870	C	T	149847870	3	4	610	1	0	0	0	0	1	0	0	0	12406	478	17	4	781	4	PPIL4	6	149847870	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09	133520165	149847870	21267197	10	53210										
TAS2R38	0	genome.wustl.edu	37	chr7	141673070	141673070	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	atacccaggagcatctgggaGatcttcctggagacccagct	11	12	2	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	7	141673070	141673070	G	T	SNP	TAS2R38	ENST00000547270	human	ensembl	69_37n	-1	known	silent	c.420	p.I140	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138	60	0	0	44	7	13.73	-	-	-	T	141673070	G	T	141673070	2	4	610	1	0	0	0	0	0	0	0	1	15667	932	33	2		2	TAS2R38	7	141673070	Silent	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		141673070	17465593	11	53211										
MSR1	0	genome.wustl.edu	37	chr8	16035439	16035439	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	agcgagcatcaaatttcacaGattcggagcagctatcagtg	10	9	3	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	8	16035439	16035439	G	T	SNP	MSR1	ENST00000262101	human	ensembl	69_37n	-1	known	missense	c.59	p.S20Y	0.999	prints_Macro_scav_rcpt	pfam_Srcr_rcpt,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MSR1	HGNC	ENSG00000038945	85	0	0	189	121	39.03	-	-	-	T	16035439	G	T	16035439	3	4	610	1	0	0	0	0	1	0	0	0	9958	942	33	2	1380	2	MSR1	8	16035439	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		16035439	130328583	12	53212										
EPPK1	0	genome.wustl.edu	37	chr8	144945136	144945136	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	tcgaagaagcccttggtgtcGtcagaagggtccaacaggat	13	9	1	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	8	144945136	144945136	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.2286	p.D762	0.975	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	117	0	0	173	34	16.43	-	-	-	A	144945136	G	A	144945136	2	1	610	1	0	0	0	0	0	0	0	1	5227	1136	40	1		1	EPPK1	8	144945136	Silent	SNP	G	TCGA-BH-A202-01A-11D-A14K-09	128909697	144945136	1418886	13	53213										
GDF2	0	genome.wustl.edu	37	chr10	48413719	48413719	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	ttgcccacctttgtggggaaCttgagatgcaccagggtctg	13	10	1	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	10	48413719	48413719	C	A	SNP	GDF2	ENST00000249598	human	ensembl	69_37n	-1	known	missense	c.1149	p.K383N	0.999	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	98	0	0	32	42	56.76	-	-	-	A	48413719	C	A	48413719	3	1	610	1	0	0	0	0	1	0	0	0	6366	564	20	4	144	4	GDF2	10	48413719	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		48413719	87121028	14	53214										
POLA2	0	genome.wustl.edu	37	chr11	65064614	65064614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gtcctcggctgtgtctgtgtGaaccctgggcgccttaccaa	12	13	1	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	11	65064614	65064614	G	A	SNP	POLA2	ENST00000265465	human	ensembl	69_37n	1	known	silent	c.1671	p.V557	1.000	pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138	82	0	0	60	39	39.39	-	-	-	A	65064614	G	A	65064614	2	1	610	1	0	0	0	0	0	0	0	1	12262	1277	45	2		2	POLA2	11	65064614	Silent	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		65064614	69941902	15	53215										
MON2	0	genome.wustl.edu	37	chr12	62965209	62965209	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	cagtttgaagtattcctgccCttctgaaagcacatggaaac	8	10	1	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	12	62965209	62965209	C	G	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	missense	c.4364	p.P1455R	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	126	0	0	72	50	40.65	-	-	-	G	62965209	C	G	62965209	3	3	610	1	0	0	0	0	1	0	0	0	9772	681	24	4	4479	4	MON2	12	62965209	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		62965209	70886686	16	53216										
RFX4	0	genome.wustl.edu	37	chr12	107080750	107080750	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gagctgcctgggtgagtgagAcgggcaagaaagaagtgagc	18	6	0	5			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	12	107080750	107080750	A	C	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.493	p.T165P	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	106	0	0	81	18	18.18	-	-	-	C	107080750	A	C	107080750	3	2	610	1	0	0	0	0	1	0	0	0	13348	275	10	5	661	5	RFX4	12	107080750	Missense_Mutation	SNP	A	TCGA-BH-A202-01A-11D-A14K-09	44115541	107080750	26771145	17	53217										
RB1	0	genome.wustl.edu	37	chr13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	ggaagatgatctggtgatttCatttcagttaatgctatgtg	11	4	3	3			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	13	48934189	48934189	C	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.644	p.S215*	1.000	pfam_DUF3452_retinoblatoma-assoc	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	110	0	0	41	37	47.44	-	-	-	A	48934189	C	A	48934189	4	1	610	1	0	0	0	0	0	1	0	0	13181	838	29	2	670	2	RB1	13	48934189	Nonsense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		48934189	66235689	18	53218										
NKX2-8	0	genome.wustl.edu	37	chr14	37051569	37051569	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	ctagaaggctgcgcacggtgAagctcaggcgtccagaggtg							TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	14	37051569	37051569	A	-	DEL	NKX2-8	ENST00000258829	human	ensembl	69_37n	-1	known	frame_shift_del	c.26	p.F9fs	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-8	HGNC	ENSG00000136327	33	0	0	9	2	18.18	-	-	-	-	37051569	A	-	37051569	7	5	610	1	0	1	0	1	0	0	0	0	10526	246	9	0	701	0	NKX2-8	14	37051569	Frame_Shift_Del	DEL	A	TCGA-BH-A202-01A-11D-A14K-09		37051569	70297971	19	53219										
MAPK6	0	genome.wustl.edu	37	chr15	52350913	52350913	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	atcgtcaggagcttctcagcGtaattccagtttacattaga	8	9	2	1			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	15	52350913	52350913	G	C	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.784	p.V262L	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	83	0	0	95	18	15.93	-	-	-	C	52350913	G	C	52350913	3	2	610	1	0	0	0	0	1	0	0	0	9352	1145	40	3	794	3	MAPK6	15	52350913	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		52350913	50180479	20	53220										
PLLP	0	genome.wustl.edu	37	chr16	57290919	57290921	+	In_Frame_Del	DEL	ATC	ATC	-													0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	aggcactcactccataggcgAtcatcaccaaacacgcaaag							TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	16	57290919	57290921	ATC	-	DEL	PLLP	ENST00000219207	human	ensembl	69_37n	-1	known	in_frame_del	c.455_453	p.M151in_frame_del	0.997:1.000:1.000	pfam_MARVEL-like_dom,prints_MAL	pfam_MARVEL-like_dom,prints_MAL	-	no_errors	PLLP	HGNC	ENSG00000102934	53	0	0	36	4	10	-	-	-	-	57290921	ATC	-	57290919	7	5	610	1	0	1	0	1	0	0	0	0	12173	333	12	0	97	0	PLLP	16	57290919	In_Frame_Del	DEL	ATC	TCGA-BH-A202-01A-11D-A14K-09		57290919	33063834	21	53221										
CES2	0	genome.wustl.edu	37	chr16	66974233	66974233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	tggtggtcatcatccagtacCgcctgggtgtcctgggcttc	13	12	2	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	16	66974233	66974233	C	T	SNP	CES2	ENST00000317091	human	ensembl	69_37n	1	known	missense	c.724	p.R242C	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831	406	0	0	131	153	53.68	-	-	-	T	66974233	C	T	66974233	3	4	610	1	0	0	0	0	1	0	0	0	3299	652	23	1	738	1	CES2	16	66974233	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09	9683314	66974233	23380520	22	53222										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	172	0	0	55	53	49.07	-	-	-	A	7578212	G	A	7578212	4	1	610	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		7578212	73616998	23	53223										
ZNF224	0	genome.wustl.edu	37	chr19	44612139	44612139	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gaagggcttcagctggtcctCaactcgtctgacccatcaga	10	13	4	2			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	19	44612139	44612139	C	T	SNP	ZNF224	ENST00000336976	human	ensembl	69_37n	1	known	missense	c.1826	p.S609L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680	73	0	0	62	44	41.51	-	-	-	T	44612139	C	T	44612139	3	4	610	1	0	0	0	0	1	0	0	0	17874	838	29	2	1840	2	ZNF224	19	44612139	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		44612139	14516844	24	53224										
RUNX1	0	genome.wustl.edu	37	chr21	36206776	36206777	+	Frame_Shift_Ins	INS	-	-	G													0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gaggcacgagggttgggcgtINSgggggctgggtggtgtgggc							TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	21	36206776	36206777	-	G	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.736_735	p.T245fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	175	0	0	95	36	27.48	-	-	-	G	36206777	-	G	36206776	7	5	610	1	0	1	1	0	0	0	0	0	13832	1696	59	0	751	0	RUNX1	21	36206776	Frame_Shift_Ins	INS	-	TCGA-BH-A202-01A-11D-A14K-09		36206776	11923119	25	53225										
PPM1F	0	genome.wustl.edu	37	chr22	22277563	22277563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gtccccttctccctggttccCgccctccagcagctcttggg	9	19	2	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	22	22277563	22277563	C	T	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.1267	p.G423R	0.000	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	21	0	0	13	12	48	-	-	-	T	22277563	C	T	22277563	3	4	610	1	0	0	0	0	1	0	0	0	12416	652	23	1	101	1	PPM1F	22	22277563	Missense_Mutation	SNP	C	TCGA-BH-A202-01A-11D-A14K-09		22277563	29027003	26	53226										
OFD1	0	genome.wustl.edu	37	chrX	13781897	13781897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	gccaaggcagttggaaatggGcgggctttctcctgccgggg	17	10	1	0			TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	X	13781897	13781897	G	T	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.2522	p.G841V	0.002	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	138	0	0	133	22	14.19	-	-	-	T	13781897	G	T	13781897	3	4	610	1	0	0	0	0	1	0	0	0	10911	1203	42	4	2596	4	OFD1	23	13781897	Missense_Mutation	SNP	G	TCGA-BH-A202-01A-11D-A14K-09		13781897	141488663	27	53227										
PRICKLE3	0	genome.wustl.edu	37	chrX	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-													0.0714285714285714	2	0.886570581706557	1.04781704781705	0	1.36216216216216	0.444444444444444	1	0	agaaataggttcccacctgaGtgtgtgtgtgtgtgtgagca							TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	69_37n	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	23	0	0	12	3	20	-	-	-	-	49040117	GT	-	49040116	7	5	610	1	0	1	0	1	0	0	0	0	12569	1044	36	0		0	PRICKLE3	23	49040116	Frame_Shift_Del	DEL	GT	TCGA-BH-A202-01A-11D-A14K-09	35258219	49040116	106230444	28	53228										
HSPG2	0	genome.wustl.edu	37	chr1	22174305	22174305	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	accgtgggggaagacgactcGatcctgatcggtggggagac	17	9	0	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	22174305	22174305	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.7902	p.I2634	0.991	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	36	0	0	15	9	37.5	-	-	-	A	22174305	G	A	22174305	2	1	611	1	0	0	0	0	0	0	0	1	7484	1048	37	1		1	HSPG2	1	22174305	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09		22174305	227076316	1	53229										
GRHL3	0	genome.wustl.edu	37	chr1	24668645	24668645	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tctgagcacagacttttcctCacaaaagggggtgaagggtg	13	8	2	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	24668645	24668645	C	T	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	1	known	missense	c.1088	p.S363L	1.000	pfam_CP2	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	66	0	0	19	12	38.71	-	-	-	T	24668645	C	T	24668645	3	4	611	1	0	0	0	0	1	0	0	0	6816	838	29	2	1158	2	GRHL3	1	24668645	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09	2494340	24668645	224581976	2	53230										
KCNH1	0	genome.wustl.edu	37	chr1	210948691	210948691	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	actgaaacttttagctcaccCtcttcctcaagttgtacgtc	5	13	3	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	210948691	210948691	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.2111	p.R704M	1.000	prints_K_chnl_volt-dep_EAG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	90	0	0	60	20	25	-	-	-	A	210948691	C	A	210948691	3	1	611	1	0	0	0	0	1	0	0	0	8085	695	24	4	866	4	KCNH1	1	210948691	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09	186280046	210948691	38301930	3	53231										
OR11L1	0	genome.wustl.edu	37	chr1	248004332	248004332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tctttgttcctcaagctgtaGataactgggttcagcagtgg	11	8	3	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004332	248004332	G	C	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.867	p.I289M	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	48	0	0	65	23	26.14	-	-	-	C	248004332	G	C	248004332	3	2	611	1	0	0	0	0	1	0	0	0	11003	932	33	2	105	2	OR11L1	1	248004332	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	37055641	248004332	1246289	4	53232			1	92		3	3	498	G		3.888369e-07
OR11L1	0	genome.wustl.edu	37	chr1	248004656	248004656	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gagagctgcatgagtggcggGaggtcgcagaagaaatggtt	18	5	0	4			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004656	248004656	G	A	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	0.792	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	36	0	0	30	7	18.92	-	-	-	A	248004656	G	A	248004656	2	1	611	1	0	0	0	0	0	0	0	1	11003	1161	41	2		2	OR11L1	1	248004656	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	324	248004656	1245965	5	53233			1	92		3	3	498	G		3.888369e-07
OR11L1	0	genome.wustl.edu	37	chr1	248004829	248004829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gagtgggctgcagatggccaGgtaacggtcataggccatga	16	8	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004829	248004829	G	C	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.370	p.L124V	0.416	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	21	0	0	21	9	30	-	-	-	C	248004829	G	C	248004829	3	2	611	1	0	0	0	0	1	0	0	0	11003	991	35	4	602	4	OR11L1	1	248004829	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	173	248004829	1245792	6	53234			1	92		3	3	498	G		3.888369e-07
PNPT1	0	genome.wustl.edu	37	chr2	55870522	55870522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	actgggtgttggtgcaaataCagaaaacgtttcttcatcca	9	8	2	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	55870522	55870522	C	T	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.1945	p.V649I	0.541	pfam_KH_dom_type_1,smart_KH_dom,pirsf_PNPase,pfscan_KH_dom_type_1,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	110	0	0	94	41	30.37	-	-	-	T	55870522	C	T	55870522	3	4	611	1	0	0	0	0	1	0	0	0	12247	478	17	4	426	4	PNPT1	2	55870522	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		55870522	187328851	7	53235										
XPO1	0	genome.wustl.edu	37	chr2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	agatttaccatgcatgaattCgaacagcttgttaactacag	7	8	0	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	61719472	61719472	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	60	0	0	36	18	33.33	-	-	-	T	61719472	C	T	61719472	3	4	611	1	0	0	0	0	1	0	0	0	17542	893	31	1	1548	1	XPO1	2	61719472	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09	5848950	61719472	181479901	8	53236										
GLI2	0	genome.wustl.edu	37	chr2	121708927	121708927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ttcaacgccccccacccgtaCgtgaacccccacatggagca	7	19	1	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	121708927	121708927	C	T	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	silent	c.363	p.Y121	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	34	0	0	14	14	50	-	-	-	T	121708927	C	T	121708927	2	4	611	1	0	0	0	0	0	0	0	1	6490	547	19	1		1	GLI2	2	121708927	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09	59989455	121708927	121490446	9	53237										
TTN	0	genome.wustl.edu	37	chr2	179436920	179436920	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cacaatgtagcctagaattcGgctgcctccatcatgctctg	8	13	2	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	179436920	179436920	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.66235	p.R22079*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	96	0	0	54	12	18.18	-	-	-	A	179436920	G	A	179436920	4	1	611	1	0	0	0	0	0	1	0	0	16832	1124	39	1	34188	1	TTN	2	179436920	Nonsense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	57727993	179436920	63762453	10	53238										
ATP2B2	0	genome.wustl.edu	37	chr3	10370571	10370571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ctgatttgcttgtgtcggtcGtcaggttgatcccactgtcg	12	10	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	10370571	10370571	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.3659	p.T1220M	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	91	0	0	90	13	12.62	-	-	-	A	10370571	G	A	10370571	3	1	611	1	0	0	0	0	1	0	0	0	1144	1145	40	1	76	1	ATP2B2	3	10370571	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09		10370571	187651859	11	53239										
OXSM	0	genome.wustl.edu	37	chr3	25833460	25833460	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	atgctggtcacataactgccCctgatcctgaaggagaaggt	11	10	1	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	25833460	25833460	C	A	SNP	OXSM	ENST00000280701	human	ensembl	69_37n	1	known	missense	c.949	p.P317T	1.000	pfam_Ketoacyl_synth_C,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	20	0	0	18	10	35.71	-	-	-	A	25833460	C	A	25833460	3	1	611	1	0	0	0	0	1	0	0	0	11408	623	22	4	951	4	OXSM	3	25833460	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09	15462889	25833460	172188970	12	53240										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0	41	50	54.95	-	-	-	G	178952085	A	G	178952085	3	3	611	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A203-01A-12D-A167-09	153118625	178952085	19070345	13	53241										
IQCG	0	genome.wustl.edu	37	chr3	197659062	197659062	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gacctggcaatgatgtcataGaaatgcattttgttttccct	8	8	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	197659062	197659062	G	A	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	silent	c.627	p.F209	0.999	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	101	0	0	59	127	68.28	-	-	-	A	197659062	G	A	197659062	2	1	611	1	0	0	0	0	0	0	0	1	7864	933	33	2		2	IQCG	3	197659062	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	18706977	197659062	363368	14	53242										
ARAP2	0	genome.wustl.edu	37	chr4	36115810	36115810	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	acctagctcttcattttcaaTgacttcaaatgtggcccaaa	5	11	4	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	36115810	36115810	T	C	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.4138	p.I1380V	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	106	0	0	57	14	19.72	-	-	-	C	36115810	T	C	36115810	3	2	611	1	0	0	0	0	1	0	0	0	841	1464	51	5	1008	5	ARAP2	4	36115810	Missense_Mutation	SNP	T	TCGA-BH-A203-01A-12D-A167-09		36115810	155038466	15	53243										
N4BP2	0	genome.wustl.edu	37	chr4	40144366	40144366	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ctttgagtacccagactatgAtgactacagagcagaggctt	10	9	0	6			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	40144366	40144366	A	T	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.4859	p.D1620V	1.000	pfam_DUF1771	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	58	0	0	35	12	25.53	-	-	-	T	40144366	A	T	40144366	3	4	611	1	0	0	0	0	1	0	0	0	10182	333	12	5	4909	5	N4BP2	4	40144366	Missense_Mutation	SNP	A	TCGA-BH-A203-01A-12D-A167-09	4028556	40144366	151009910	16	53244										
CHIC2	0	genome.wustl.edu	37	chr4	54915207	54915207	+	Frame_Shift_Del	DEL	T	T	-													0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cacaaagtagccaacgtacaTtaacaggaaggttcttctta							TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	54915207	54915207	T	-	DEL	CHIC2	ENST00000263921	human	ensembl	69_37n	-1	known	frame_shift_del	c.245	p.N82fs	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC2	HGNC	ENSG00000109220	46	0	0	27	8	22.86	-	-	-	-	54915207	T	-	54915207	7	5	611	1	0	1	0	1	0	0	0	0	3373	1493	52	0	268	0	CHIC2	4	54915207	Frame_Shift_Del	DEL	T	TCGA-BH-A203-01A-12D-A167-09	14770841	54915207	136239069	17	53245										
ARL15	0	genome.wustl.edu	37	chr5	53182436	53182436	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ttttcttctaacaaattaatCagctgagagaagctgtcttt	6	7	4	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	5	53182436	53182436	C	T	SNP	ARL15	ENST00000504924	human	ensembl	69_37n	-1	known	silent	c.570	p.L190	0.996	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL15	HGNC	ENSG00000185305	112	0	0	43	14	24.56	-	-	-	T	53182436	C	T	53182436	2	4	611	1	0	0	0	0	0	0	0	1	933	813	29	2		2	ARL15	5	53182436	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09		53182436	127732824	18	53246										
COL9A1	0	genome.wustl.edu	37	chr6	71004156	71004156	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tgccaacttgctccttcccaGaggaatcctgaatctgccaa	7	14	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	71004156	71004156	G	C	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.410	p.S137C	0.169	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	46	0	0	24	11	31.43	-	-	-	C	71004156	G	C	71004156	3	2	611	1	0	0	0	0	1	0	0	0	3737	942	33	2	2567	2	COL9A1	6	71004156	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09		71004156	100110911	19	53247										
SLC17A5	0	genome.wustl.edu	37	chr6	74346398	74346398	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gtagcaaattattccagaaaGaggaagagaaattactgtcc	9	6	0	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	74346398	74346398	G	C	SNP	SLC17A5	ENST00000355773	human	ensembl	69_37n	-1	known	missense	c.646	p.L216V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899	34	0	0	13	4	23.53	-	-	-	C	74346398	G	C	74346398	3	2	611	1	0	0	0	0	1	0	0	0	14509	942	33	2	869	2	SLC17A5	6	74346398	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	3342242	74346398	96768669	20	53248										
GLI3	0	genome.wustl.edu	37	chr7	42005234	42005234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cctcggggcagggctgctcgAgggcatggaactgctggcca	17	12	0	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	42005234	42005234	A	C	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.3437	p.L1146R	0.975	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	36	0	0	15	8	34.78	-	-	-	C	42005234	A	C	42005234	3	2	611	1	0	0	0	0	1	0	0	0	6491	304	11	5	1309	5	GLI3	7	42005234	Missense_Mutation	SNP	A	TCGA-BH-A203-01A-12D-A167-09		42005234	117133429	21	53249										
NRCAM	0	genome.wustl.edu	37	chr7	107820770	107820770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tggctaaagggctctagcccCggcaacatgccatgagtctt	11	12	2	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	107820770	107820770	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	silent	c.2748	p.P916	0.002	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	59	0	0	54	11	16.92	-	-	-	T	107820770	C	T	107820770	2	4	611	1	0	0	0	0	0	0	0	1	10717	639	23	1		1	NRCAM	7	107820770	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09	65815536	107820770	51317893	22	53250										
PHYHIP	0	genome.wustl.edu	37	chr8	22084434	22084434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ccatcgctctgcttcactgcCgtctgcacggccacactgta	8	17	3	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	8	22084434	22084434	C	T	SNP	PHYHIP	ENST00000454243	human	ensembl	69_37n	-1	known	silent	c.270	p.T90	0.764	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490	47	0	0	33	4	10.81	-	-	-	T	22084434	C	T	22084434	2	4	611	1	0	0	0	0	0	0	0	1	11940	639	23	1		1	PHYHIP	8	22084434	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09		22084434	124279588	23	53251										
GAPVD1	0	genome.wustl.edu	37	chr9	128064405	128064405	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gagggaaaatcctcgtcttaTtgcctcctctttggttgctg	10	10	2	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	128064405	128064405	T	C	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.329	p.I110T	1.000	superfamily_Rho_GTPase_activation_prot	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	59	0	0	77	11	12.5	-	-	-	C	128064405	T	C	128064405	3	2	611	1	0	0	0	0	1	0	0	0	6289	1493	52	5	335	5	GAPVD1	9	128064405	Missense_Mutation	SNP	T	TCGA-BH-A203-01A-12D-A167-09		128064405	13149026	24	53252										
ST6GALNAC6	0	genome.wustl.edu	37	chr9	130656839	130656839	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcagtgatgctccacttcttGaggttgacaggtcggcggct	13	10	2	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	130656839	130656839	G	C	SNP	ST6GALNAC6	ENST00000542456	human	ensembl	69_37n	-1	known	nonsense	c.56	p.S19*	1.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	46	0	0	25	11	30.56	-	-	-	C	130656839	G	C	130656839	4	2	611	1	0	0	0	0	0	1	0	0	15319	1277	45	2	768	2	ST6GALNAC6	9	130656839	Nonsense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	2592434	130656839	10556592	25	53253										
ARHGAP21	0	genome.wustl.edu	37	chr10	24896748	24896748	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gaggaactgttgctatggagGggacctgagaggtagaggct	18	5	0	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	24896748	24896748	G	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.2507	p.P836H	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	74	0	0	23	15	39.47	-	-	-	T	24896748	G	T	24896748	3	4	611	1	0	0	0	0	1	0	0	0	873	1232	43	4	3437	4	ARHGAP21	10	24896748	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09		24896748	110637999	26	53254										
LDB1	0	genome.wustl.edu	37	chr10	103867910	103867910	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcttggctggacggaggcttGctgttccaggggctgttggc	17	9	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	103867910	103867910	G	A	SNP	LDB1	ENST00000425280	human	ensembl	69_37n	-1	known	silent	c.1176	p.S392	1.000	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728	92	0	0	53	26	32.91	-	-	-	A	103867910	G	A	103867910	2	1	611	1	0	0	0	0	0	0	0	1	8749	1310	46	4		4	LDB1	10	103867910	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	78971162	103867910	31666837	27	53255										
CTBP2	0	genome.wustl.edu	37	chr10	126683158	126683158	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tagaccctctgcacgcccagGgaccgctcgatcccatcctg	9	18	1	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	126683158	126683158	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	silent	c.2280	p.S760	1.000	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	71	0	0	156	19	10.86	-	-	-	A	126683158	G	A	126683158	2	1	611	1	0	0	0	0	0	0	0	1	4030	1219	43	4		4	CTBP2	10	126683158	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	22815248	126683158	8851589	28	53256										
NADSYN1	0	genome.wustl.edu	37	chr11	71185527	71185527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tgtgccatgattgccatgaaCggaagcgtctttgctcaagg	12	9	2	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	71185527	71185527	C	T	SNP	NADSYN1	ENST00000525200	human	ensembl	69_37n	1	known	missense	c.653	p.T218M	0.994	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	88	0	0	78	12	13.33	-	-	-	T	71185527	C	T	71185527	3	4	611	1	0	0	0	0	1	0	0	0	10210	535	19	1	787	1	NADSYN1	11	71185527	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		71185527	63820989	29	53257										
ZC3H12C	0	genome.wustl.edu	37	chr11	110030002	110030002	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcaggaaattttacgtaaatTagagaaggagaaaatcctgg	10	4	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	110030002	110030002	T	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	1	known	nonsense	c.935	p.L312*	0.700	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	41	0	0	30	5	14.29	-	-	-	A	110030002	T	A	110030002	4	1	611	1	0	0	0	0	0	1	0	0	17659	1764	61	5	949	5	ZC3H12C	11	110030002	Nonsense_Mutation	SNP	T	TCGA-BH-A203-01A-12D-A167-09	38844475	110030002	24976514	30	53258										
MLL2	0	genome.wustl.edu	37	chr12	49426774	49426774	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gttgctgttgctgttgcagcTgctgctgctgctgaagctgc	14	10	0	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	49426774	49426774	T	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.11714	p.Q3905L	0.688	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	45	0	0	46	7	13.21	-	-	-	A	49426774	T	A	49426774	3	1	611	1	0	0	0	0	1	0	0	0	9692	1580	55	5	4963	5	MLL2	12	49426774	Missense_Mutation	SNP	T	TCGA-BH-A203-01A-12D-A167-09		49426774	84425121	31	53259										
NXPH4	0	genome.wustl.edu	37	chr12	57619524	57619524	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cagagtgagcacccctacttCggatagcgcccctccccagc	9	18	0	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	57619524	57619524	C	T	SNP	NXPH4	ENST00000349394	human	ensembl	69_37n	1	known	silent	c.921	p.F307	0.669	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH4	HGNC	ENSG00000182379	14	0	0	12	4	25	-	-	-	T	57619524	C	T	57619524	2	4	611	1	0	0	0	0	0	0	0	1	10866	883	31	1		1	NXPH4	12	57619524	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09	8192750	57619524	76232371	32	53260										
CDX2	0	genome.wustl.edu	37	chr13	28537414	28537414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ggctgtggtggcggcggaggCggctgtggtggctgctgctg	23	8	0	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	28537414	28537414	C	T	SNP	CDX2	ENST00000548877	human	ensembl	69_37n	-1	putative	missense	c.308	p.R103H	0.882	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDX2	HGNC	ENSG00000165556	95	0	0	56	13	18.57	-	-	-	T	28537414	C	T	28537414	3	4	611	1	0	0	0	0	1	0	0	0	3212	755	27	1	165	1	CDX2	13	28537414	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		28537414	86632464	33	53261										
RBM26	0	genome.wustl.edu	37	chr13	79896574	79896574	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	agttttagatcttgccctttGaaacgagctccatgaactgc	8	10	1	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	79896574	79896574	G	A	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	silent	c.2844	p.F948	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	110	0	0	63	22	25.88	-	-	-	A	79896574	G	A	79896574	2	1	611	1	0	0	0	0	0	0	0	1	13209	1281	45	2		2	RBM26	13	79896574	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	51359160	79896574	35273304	34	53262										
TFDP1	0	genome.wustl.edu	37	chr13	114292199	114292199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ttccacgtctaacggcacaaGgttctctgccaggtgacagt	10	12	2	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	114292199	114292199	G	A	SNP	TFDP1	ENST00000375370	human	ensembl	69_37n	1	known	missense	c.1073	p.R358K	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP1	HGNC	ENSG00000198176	77	0	0	48	7	12.73	-	-	-	A	114292199	G	A	114292199	3	1	611	1	0	0	0	0	1	0	0	0	15892	1000	35	4	1111	4	TFDP1	13	114292199	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	34395625	114292199	877679	35	53263										
ATP10A	0	genome.wustl.edu	37	chr15	25953373	25953373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gatgcacaaggtgcgcaggcCttccgccgcatacacgttga	12	13	0	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	15	25953373	25953373	C	G	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.2419	p.G807R	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	72	0	0	24	8	25	-	-	-	G	25953373	C	G	25953373	3	3	611	1	0	0	0	0	1	0	0	0	1120	681	24	4	2124	4	ATP10A	15	25953373	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		25953373	76578019	36	53264										
ABCC6	0	genome.wustl.edu	37	chr16	16282792	16282792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ctctgcattcatagcattctCggccaccagagtgtggacag	10	12	3	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	16282792	16282792	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.1675	p.E559K	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	53	0	0	25	5	16.67	-	-	-	T	16282792	C	T	16282792	3	4	611	1	0	0	0	0	1	0	0	0	57	893	31	1	2912	1	ABCC6	16	16282792	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		16282792	74071961	37	53265										
PALB2	0	genome.wustl.edu	37	chr16	23614905	23614905	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tgggaggagggcagtacactGaccgagaagtaagtcccaaa	14	8	0	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	23614905	23614905	G	A	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	nonsense	c.3436	p.Q1146*	0.980	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	50	0	0	25	6	19.35	-	-	-	A	23614905	G	A	23614905	4	1	611	1	0	0	0	0	0	1	0	0	11479	1299	45	2	128	2	PALB2	16	23614905	Nonsense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	7332113	23614905	66739848	38	53266										
FBXL8	0	genome.wustl.edu	37	chr16	67196943	67196943	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gagtgccgcggagaaaaaccGctcttcgacgcgggccgcga	15	13	1	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	67196943	67196943	G	A	SNP	FBXL8	ENST00000258200	human	ensembl	69_37n	1	known	silent	c.345	p.P115	0.974	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL8	HGNC	ENSG00000135722	26	0	0	5	6	54.55	-	-	-	A	67196943	G	A	67196943	2	1	611	1	0	0	0	0	0	0	0	1	5771	1074	38	1		1	FBXL8	16	67196943	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	43582038	67196943	23157810	39	53267										
DPEP3	0	genome.wustl.edu	37	chr16	68009816	68009816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tagcctggtgtccattctgaGgcacgaggtgggagtggcag	17	8	1	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	68009816	68009816	G	T	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	missense	c.1394	p.P465H	0.030	NULL	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	92	0	0	55	9	14.06	-	-	-	T	68009816	G	T	68009816	3	4	611	1	0	0	0	0	1	0	0	0	4750	1000	35	4	151	4	DPEP3	16	68009816	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	812873	68009816	22344937	40	53268										
KLHL36	0	genome.wustl.edu	37	chr16	84690716	84690716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	attgggctcaaggccgtggtGgacttcctgtacggcgggga	17	9	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	84690716	84690716	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	69_37n	1	known	silent	c.303	p.V101	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686	62	0	0	28	10	26.32	-	-	-	A	84690716	G	A	84690716	2	1	611	1	0	0	0	0	0	0	0	1	8442	1335	47	4		4	KLHL36	16	84690716	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	16680900	84690716	5664037	41	53269										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0	22	20	47.62	-	-	-	T	7577120	C	T	7577120	3	4	611	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		7577120	73618090	42	53270										
RNF213	0	genome.wustl.edu	37	chr17	78358925	78358925	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cagttccagaacgtccagcaAgttgaatacagctccatcag	8	12	1	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	78358925	78358925	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.14409	p.Q4803	0.002	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	60	0	0	34	15	30.61	-	-	-	G	78358925	A	G	78358925	2	3	611	1	0	0	0	0	0	0	0	1	13563	69	3	5		5	RNF213	17	78358925	Silent	SNP	A	TCGA-BH-A203-01A-12D-A167-09	70781805	78358925	2836285	43	53271										
FASN	0	genome.wustl.edu	37	chr17	80047261	80047261	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	acgaactcaaacaccggggcCtggacatcgtgggagcctgg	14	12	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	80047261	80047261	C	A	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	splice_site	c.1966-1	e12-1	1.000	-	-	-	no_errors	FASN	HGNC	ENSG00000169710	26	0	0	16	4	20	-	-	-	A	80047261	C	A	80047261	5	1	611	1	0	0	0	0	0	0	1	0	5729	695	24	4	5694	4	FASN	17	80047261	Splice_Site	SNP	C	TCGA-BH-A203-01A-12D-A167-09	1688336	80047261	1147949	44	53272										
MYH14	0	genome.wustl.edu	37	chr19	50753006	50753006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tggagcaggaggagtaccagCgtgagggcatcccctggacc	16	11	0	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	50753006	50753006	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.1582	p.R528C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	108	0	0	112	24	17.65	-	-	-	T	50753006	C	T	50753006	3	4	611	1	0	0	0	0	1	0	0	0	10105	768	27	1	1632	1	MYH14	19	50753006	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		50753006	8375977	45	53273										
SLC27A5	0	genome.wustl.edu	37	chr19	59021339	59021339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcttgctcatctgcagtaccCgctcatgcgtgaggatggct	11	12	4	1			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	59021339	59021339	C	T	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	missense	c.932	p.R311Q	0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	56	0	0	35	4	10.26	-	-	-	T	59021339	C	T	59021339	3	4	611	1	0	0	0	0	1	0	0	0	14618	652	23	1	1172	1	SLC27A5	19	59021339	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09	8268333	59021339	107644	46	53274										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31984736	31984736	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	cgagctccatcctcctgcctCtctggactgggacacatggt	10	15	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	20	31984736	31984736	C	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.135	p.E45D	0.128	NULL	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	38	0	0	17	9	34.62	-	-	-	A	31984736	C	A	31984736	3	1	611	1	0	0	0	0	1	0	0	0	3174	912	32	2	1680	2	CDK5RAP1	20	31984736	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		31984736	31040784	47	53275										
NEFH	0	genome.wustl.edu	37	chr22	29885829	29885829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	aggaagaagcaaagacccccGagaaggccaagtccccagtg	12	12	0	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	29885829	29885829	G	A	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	1	known	missense	c.2200	p.E734K	0.848	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	79	0	0	65	10	13.33	-	-	-	A	29885829	G	A	29885829	3	1	611	1	0	0	0	0	1	0	0	0	10386	1059	37	1	2214	1	NEFH	22	29885829	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09		29885829	21418737	48	53276										
EIF3D	0	genome.wustl.edu	37	chr22	36907704	36907704	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ttcatgcagatgtcaatgacGcagcgtaaaatgccccaggc	10	11	2	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	36907704	36907704	G	A	SNP	EIF3D	ENST00000216190	human	ensembl	69_37n	-1	known	silent	c.1479	p.C493	1.000	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	-	no_errors	EIF3D	HGNC	ENSG00000100353	78	0	0	63	10	13.7	-	-	-	A	36907704	G	A	36907704	2	1	611	1	0	0	0	0	0	0	0	1	5051	1079	38	1		1	EIF3D	22	36907704	Silent	SNP	G	TCGA-BH-A203-01A-12D-A167-09	7021875	36907704	14396862	49	53277										
FAM123B	0	genome.wustl.edu	37	chrX	63410049	63410049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ggccctcatgctctgggaggCctgtggctggaggttatagc	16	10	2	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	63410049	63410049	C	T	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.3118	p.A1040T	0.480	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	46	0	0	20	9	31.03	-	-	-	T	63410049	C	T	63410049	3	4	611	1	0	0	0	0	1	0	0	0	5463	739	26	4	293	4	FAM123B	23	63410049	Missense_Mutation	SNP	C	TCGA-BH-A203-01A-12D-A167-09		63410049	91860511	50	53278										
AR	0	genome.wustl.edu	37	chrX	66766554	66766554	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	agtcccacttgtgtcaaaagCgaaatgggcccctggatgga	12	10	1	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	66766554	66766554	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	silent	c.1566	p.S522	0.990	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	36	0	0	9	4	30.77	-	-	-	T	66766554	C	T	66766554	2	4	611	1	0	0	0	0	0	0	0	1	838	767	27	1		1	AR	23	66766554	Silent	SNP	C	TCGA-BH-A203-01A-12D-A167-09	3356505	66766554	88504006	51	53279										
GLA	0	genome.wustl.edu	37	chrX	100662776	100662776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	gcagccagcccatggtaggcGtccttgccaatccattgtcc	10	15	0	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	100662776	100662776	G	A	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.116	p.T39M	0.956	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	65	0	0	46	8	14.81	-	-	-	A	100662776	G	A	100662776	3	1	611	1	0	0	0	0	1	0	0	0	6478	1145	40	1	1201	1	GLA	23	100662776	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	33896222	100662776	54607784	52	53280										
GPRASP1	0	genome.wustl.edu	37	chrX	101912271	101912271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	ctgagagttcatcctgtaacTgcatacaatgtgagctgaaa	9	8	1	3			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	101912271	101912271	T	G	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	missense	c.3430	p.C1144G	0.812	superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	75	0	0	38	16	29.63	-	-	-	G	101912271	T	G	101912271	3	3	611	1	0	0	0	0	1	0	0	0	6773	1580	55	5	3432	5	GPRASP1	23	101912271	Missense_Mutation	SNP	T	TCGA-BH-A203-01A-12D-A167-09	1249495	101912271	53358289	53	53281										
IGSF1	0	genome.wustl.edu	37	chrX	130411977	130411977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	tcttccaacagcaccaagttGctggacaggttcttgctctc	8	13	3	0			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	130411977	130411977	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2188	p.Q730K	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	117	0	0	71	32	31.07	-	-	-	T	130411977	G	T	130411977	3	4	611	1	0	0	0	0	1	0	0	0	7650	1328	46	4	1869	4	IGSF1	23	130411977	Missense_Mutation	SNP	G	TCGA-BH-A203-01A-12D-A167-09	28499706	130411977	24858583	54	53282										
IRAK1	0	genome.wustl.edu	37	chrX	153282465	153282465	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.163636363636364	9	0.130347764182923	1.97573083287369	5.41496598639456	1.3100724160632	1	1	0	aactgaattgcccgggctgtAcccagaaggatgtccagtcg	12	11	0	2			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	153282465	153282465	A	T	SNP	IRAK1	ENST00000369973	human	ensembl	69_37n	-1	known	missense	c.926	p.V309E	0.998	NULL	pfam_Death,superfamily_DEATH-like,superfamily_Kinase-like_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	97	0	0	65	12	15.58	-	-	-	T	153282465	A	T	153282465	3	4	611	1	0	0	0	0	1	0	0	0	7875	378	14	5	1203	5	IRAK1	23	153282465	Missense_Mutation	SNP	A	TCGA-BH-A203-01A-12D-A167-09	22870488	153282465	1988095	55	53283										
RERE	0	genome.wustl.edu	37	chr1	8617573	8617573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gacgttcatgaggagatggtCcctcttactctgaaaaggaa	11	8	3	3			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	8617573	8617573	C	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.532	p.D178N	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	42	0	0	7	28	77.78	-	-	-	T	8617573	C	T	8617573	3	4	612	1	0	0	0	0	1	0	0	0	13314	855	30	2	4244	2	RERE	1	8617573	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09		8617573	240633048	1	53284										
SPEN	0	genome.wustl.edu	37	chr1	16202935	16202936	+	Frame_Shift_Ins	INS	-	-	TA													0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gtttacactgcccagtgtggINStacacagggatatctacagg							TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	16202935	16202936	-	TA	INS	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_ins	c.643_644	p.H216fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	51	0	0	11	23	67.65	-	-	-	TA	16202936	-	TA	16202935	7	5	612	1	0	1	1	0	0	0	0	0	15129	1261	44	0	653	0	SPEN	1	16202935	Frame_Shift_Ins	INS	-	TCGA-BH-A204-01A-11D-A159-09	7585362	16202935	233047686	2	53285										
ZNF691	0	genome.wustl.edu	37	chr1	43317408	43317408	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gtgcactgtgtgtgggaaacActtctcccggagctcgaatc	12	11	1	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	43317408	43317408	A	G	SNP	ZNF691	ENST00000397044	human	ensembl	69_37n	1	known	missense	c.872	p.H291R	0.845	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011	17	0	0	2	15	88.24	-	-	-	G	43317408	A	G	43317408	3	3	612	1	0	0	0	0	1	0	0	0	18192	159	6	5	781	5	ZNF691	1	43317408	Missense_Mutation	SNP	A	TCGA-BH-A204-01A-11D-A159-09	27114473	43317408	205933213	3	53286										
CD46	0	genome.wustl.edu	37	chr1	207930364	207930364	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ttctcttatccctagatgccTgtgaggagccaccaacattt	7	12	1	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	207930364	207930364	T	G	SNP	CD46	ENST00000322875	human	ensembl	69_37n	1	known	missense	c.103	p.C35G	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_M_CF_CD46,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_M_CF_CD46,pfscan_Sushi_SCR_CCP	-	no_errors	CD46	HGNC	ENSG00000117335	70	0	0	38	35	47.3	-	-	-	G	207930364	T	G	207930364	3	3	612	1	0	0	0	0	1	0	0	0	3047	1580	55	5	109	5	CD46	1	207930364	Missense_Mutation	SNP	T	TCGA-BH-A204-01A-11D-A159-09	164612956	207930364	41320257	4	53287										
AIDA	0	genome.wustl.edu	37	chr1	222849466	222849466	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ctaactgtaatatagggatcGatgcactgcccagcatcttt	8	10	1	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	222849466	222849466	G	A	SNP	AIDA	ENST00000340020	human	ensembl	69_37n	-1	known	silent	c.555	p.I185	0.933	pfam_AIDA	pfam_AIDA,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063	107	0	0	64	61	48.8	-	-	-	A	222849466	G	A	222849466	2	1	612	1	0	0	0	0	0	0	0	1	423	1048	37	1		1	AIDA	1	222849466	Silent	SNP	G	TCGA-BH-A204-01A-11D-A159-09	14919102	222849466	26401155	5	53288										
NBAS	0	genome.wustl.edu	37	chr2	15307434	15307434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	aaagaagttcttggtcacaaTtggaatcattcaccttcaag	7	8	5	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	15307434	15307434	T	C	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6854	p.N2285S	0.992	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	43	0	0	22	18	45	-	-	-	C	15307434	T	C	15307434	3	2	612	1	0	0	0	0	1	0	0	0	10258	1493	52	5	265	5	NBAS	2	15307434	Missense_Mutation	SNP	T	TCGA-BH-A204-01A-11D-A159-09		15307434	227891939	6	53289										
GRB14	0	genome.wustl.edu	37	chr2	165378582	165378582	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ctttccctgttctttcgcatGtaagaaaccatgaatttcag	6	10	2	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	165378582	165378582	G	A	SNP	GRB14	ENST00000263915	human	ensembl	69_37n	-1	known	missense	c.724	p.H242Y	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	42	0	0	29	23	44.23	-	-	-	A	165378582	G	A	165378582	3	1	612	1	0	0	0	0	1	0	0	0	6808	1377	48	4	934	4	GRB14	2	165378582	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09	150071148	165378582	77820791	7	53290										
GLS	0	genome.wustl.edu	37	chr2	191827682	191827682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	aacgggaaggaaaatcaaacCgtccataagaatcttgatgg	10	7	2	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	191827682	191827682	C	T	SNP	GLS	ENST00000412247	human	ensembl	69_37n	1	putative	missense	c.479	p.P160L	0.049	NULL	pfam_Glutaminase,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon	GLS	HGNC	ENSG00000115419	47	0	0	37	21	36.21	-	-	-	T	191827682	C	T	191827682	3	4	612	1	0	0	0	0	1	0	0	0	6515	639	23	1	2050	1	GLS	2	191827682	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09	26449100	191827682	51371691	8	53291										
CAND2	0	genome.wustl.edu	37	chr3	12856688	12856688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tgacatgagctggaaggtgcGccgggcagctgccaagtgca	16	10	0	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	12856688	12856688	G	A	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	missense	c.1055	p.R352H	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	13	0	0	12	7	36.84	-	-	-	A	12856688	G	A	12856688	3	1	612	1	0	0	0	0	1	0	0	0	2641	1087	38	1	1085	1	CAND2	3	12856688	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		12856688	185165742	9	53292										
PRSS50	0	genome.wustl.edu	37	chr3	46759116	46759116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	cgcccccggggcttcccctgCgccccagcaacctgcggagg	13	20	0	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	46759116	46759116	C	T	SNP	PRSS50	ENST00000315170	human	ensembl	69_37n	-1	known	missense	c.118	p.A40T	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS50	HGNC	ENSG00000206549	29	0	0	31	21	39.62	-	-	-	T	46759116	C	T	46759116	3	4	612	1	0	0	0	0	1	0	0	0	12711	768	27	1	1059	1	PRSS50	3	46759116	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09	33902428	46759116	151263314	10	53293										
RAD54L2	0	genome.wustl.edu	37	chr3	51673686	51673686	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	aacattgtcacatatgaatgGgtgagtcaagcagatccttc	9	8	2	3			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	51673686	51673686	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	1	known	nonsense	c.2112	p.W704*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	46	0	0	22	22	50	-	-	-	A	51673686	G	A	51673686	4	1	612	1	0	0	0	0	0	1	0	0	13077	1246	43	4	2154	4	RAD54L2	3	51673686	Nonsense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09	4914570	51673686	146348744	11	53294										
CHIC2	0	genome.wustl.edu	37	chr4	54880282	54880282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ataacttctcaatcgatcttCgtgtctggaagacaaatgag	8	8	3	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	54880282	54880282	C	T	SNP	CHIC2	ENST00000263921	human	ensembl	69_37n	-1	known	missense	c.335	p.R112Q	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC2	HGNC	ENSG00000109220	96	0	0	68	51	42.86	-	-	-	T	54880282	C	T	54880282	3	4	612	1	0	0	0	0	1	0	0	0	3373	884	31	1	174	1	CHIC2	4	54880282	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09		54880282	136273994	12	53295										
ADH1C	0	genome.wustl.edu	37	chr4	100261755	100261755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	caaaaatagctcctttccacGtgcgtccagtcagtagcagc	8	13	1	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	100261755	100261755	G	A	SNP	ADH1C	ENST00000515683	human	ensembl	69_37n	-1	known	missense	c.941	p.T314M	0.929	NULL	NULL	-	pseudogene	ADH1C	HGNC	ENSG00000248144	109	1	0.91	91	58	38.93	-	-	-	A	100261755	G	A	100261755	3	1	612	1	0	0	0	0	1	0	0	0	309	1145	40	1	198	1	ADH1C	4	100261755	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09	45381473	100261755	90892521	13	53296										
CCNA2	0	genome.wustl.edu	37	chr4	122743762	122743762	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tttccaaggaggaacggtgaCatgctcatcatttacaggaa	10	8	2	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	122743762	122743762	C	A	SNP	CCNA2	ENST00000274026	human	ensembl	69_37n	-1	known	missense	c.253	p.V85F	0.078	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA2	HGNC	ENSG00000145386	63	0	0	57	37	39.36	-	-	-	A	122743762	C	A	122743762	3	1	612	1	0	0	0	0	1	0	0	0	2939	478	17	4	1073	4	CCNA2	4	122743762	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09	22482007	122743762	68410514	14	53297										
PTTG1	0	genome.wustl.edu	37	chr5	159854736	159854736	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	taacagactttgagagttttGacctgcctgaagagcaccag	10	9	0	5			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	5	159854736	159854736	G	A	SNP	PTTG1	ENST00000352433	human	ensembl	69_37n	1	known	missense	c.385	p.D129N	1.000	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG1	HGNC	ENSG00000164611	42	0	0	34	24	41.38	-	-	-	A	159854736	G	A	159854736	3	1	612	1	0	0	0	0	1	0	0	0	12902	1290	45	2	399	2	PTTG1	5	159854736	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		159854736	21060524	15	53298										
KIF6	0	genome.wustl.edu	37	chr6	39507794	39507794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ctgacctattttcttgtggaGcaaactggatcttttcccca	7	11	2	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	6	39507794	39507794	G	A	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.1630	p.L544F	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	127	0	0	79	53	40.15	-	-	-	A	39507794	G	A	39507794	3	1	612	1	0	0	0	0	1	0	0	0	8360	971	34	4	858	4	KIF6	6	39507794	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		39507794	131607273	16	53299										
FZD6	0	genome.wustl.edu	37	chr8	104342280	104342280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gcagtgtatctgaaagtgcgCggagtgaaggaaggtgagat	17	4	1	3			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	8	104342280	104342280	C	T	SNP	FZD6	ENST00000358755	human	ensembl	69_37n	1	known	missense	c.1939	p.R647W	0.800	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930	54	0	0	86	31	26.5	-	-	-	T	104342280	C	T	104342280	3	4	612	1	0	0	0	0	1	0	0	0	6183	759	27	1	1957	1	FZD6	8	104342280	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09		104342280	42021742	17	53300										
COL15A1	0	genome.wustl.edu	37	chr9	101822233	101822233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ggcttcccggatccagaaacCtggtcagtattatcatcagt	9	11	3	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	9	101822233	101822233	C	A	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	missense	c.3400	p.L1134M	0.994	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	102	0	0	74	62	45.59	-	-	-	A	101822233	C	A	101822233	3	1	612	1	0	0	0	0	1	0	0	0	3702	680	24	4	3542	4	COL15A1	9	101822233	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09		101822233	39391198	18	53301										
UAP1L1	0	genome.wustl.edu	37	chr9	139972912	139972912	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gagccccgtctgcctgcaggGccaggcgtactcgcggccgg	16	16	1	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	9	139972912	139972912	G	T	SNP	UAP1L1	ENST00000360271	human	ensembl	69_37n	1	known	silent	c.84	p.G28	0.000	NULL	pfam_UDPGP_trans	-	no_errors	UAP1L1	HGNC	ENSG00000197355	21	0	0	8	11	57.89	-	-	-	T	139972912	G	T	139972912	2	4	612	1	0	0	0	0	0	0	0	1	16923	1218	42	4		4	UAP1L1	9	139972912	Silent	SNP	G	TCGA-BH-A204-01A-11D-A159-09	38150679	139972912	1240519	19	53302										
CPN1	0	genome.wustl.edu	37	chr10	101823406	101823406	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	accaggaagccccattggtgAtgccatctgggaagtaatct	11	10	2	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	10	101823406	101823406	A	G	SNP	CPN1	ENST00000370418	human	ensembl	69_37n	-1	known	missense	c.836	p.I279T	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054	51	0	0	51	20	28.17	-	-	-	G	101823406	A	G	101823406	3	3	612	1	0	0	0	0	1	0	0	0	3839	333	12	5	560	5	CPN1	10	101823406	Missense_Mutation	SNP	A	TCGA-BH-A204-01A-11D-A159-09		101823406	33711341	20	53303										
DYNC2H1	0	genome.wustl.edu	37	chr11	103091479	103091479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	aggagttttaaggttgatggGtatctttgatacatcttggg	13	3	2	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	11	103091479	103091479	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.9074	p.G3025V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	70	0	0	49	38	43.68	-	-	-	T	103091479	G	T	103091479	3	4	612	1	0	0	0	0	1	0	0	0	4881	1261	44	4	9300	4	DYNC2H1	11	103091479	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		103091479	31915037	21	53304										
DDI1	0	genome.wustl.edu	37	chr11	103908332	103908332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tttgaaggcttttgttgactCgggcgcccagatgaccatta	11	9	0	4			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	11	103908332	103908332	C	T	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	missense	c.782	p.S261L	0.999	pfam_Peptidase_aspartic_euk-pred,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	50	0	0	29	25	46.3	-	-	-	T	103908332	C	T	103908332	3	4	612	1	0	0	0	0	1	0	0	0	4359	893	31	1	784	1	DDI1	11	103908332	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09	816853	103908332	31098184	22	53305										
MYBPC1	0	genome.wustl.edu	37	chr12	102045070	102045070	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gtaaatcttggaaaagaaatCtgcctgaagtgtgaaatctc	9	6	3	3			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	12	102045070	102045070	C	T	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	silent	c.1425	p.I475	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	76	0	0	78	45	36.59	-	-	-	T	102045070	C	T	102045070	2	4	612	1	0	0	0	0	0	0	0	1	10083	903	32	2		2	MYBPC1	12	102045070	Silent	SNP	C	TCGA-BH-A204-01A-11D-A159-09		102045070	31806825	23	53306										
TJP1	0	genome.wustl.edu	37	chr15	30024679	30024679	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	ttcttctcttgccagcttttCtctggcaacatcagctattg	6	12	4	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	30024679	30024679	C	A	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	nonsense	c.1975	p.E659*	1.000	smart_Guanylate_kin/L-typ_Ca_channel	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	89	0	0	61	48	44.04	-	-	-	A	30024679	C	A	30024679	4	1	612	1	0	0	0	0	0	1	0	0	16024	922	32	2	3327	2	TJP1	15	30024679	Nonsense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09		30024679	72506713	24	53307										
SLTM	0	genome.wustl.edu	37	chr15	59186732	59186732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	acatagttacaatgccatagCattttgccccaggacttcga	7	11	0	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	59186732	59186732	C	T	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.1277	p.C426Y	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	78	0	0	56	34	37.78	-	-	-	T	59186732	C	T	59186732	3	4	612	1	0	0	0	0	1	0	0	0	14843	710	25	4	1875	4	SLTM	15	59186732	Missense_Mutation	SNP	C	TCGA-BH-A204-01A-11D-A159-09	29162053	59186732	43344660	25	53308										
NARG2	0	genome.wustl.edu	37	chr15	60760323	60760323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gaatttgcaggaatctttgcGtatttaaccaacaagtccac	7	9	1	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	60760323	60760323	G	A	SNP	NARG2	ENST00000558181	human	ensembl	69_37n	-1	known	missense	c.185	p.T62M	0.882	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915	86	0	0	42	30	41.67	-	-	-	A	60760323	G	A	60760323	3	1	612	1	0	0	0	0	1	0	0	0	10241	1140	40	1	2655	1	NARG2	15	60760323	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09	1573591	60760323	41771069	26	53309										
PDPR	0	genome.wustl.edu	37	chr16	70178401	70178401	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	acacatgccgaaagacagcaAcctgctcctggaggacgtca	10	13	1	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	16	70178401	70178401	A	T	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.1832	p.N611I	0.999	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	12	0	0	0	3	100	-	-	-	T	70178401	A	T	70178401	3	4	612	1	0	0	0	0	1	0	0	0	11762	43	2	5	1882	5	PDPR	16	70178401	Missense_Mutation	SNP	A	TCGA-BH-A204-01A-11D-A159-09		70178401	20176352	27	53310										
MAP2K4	0	genome.wustl.edu	37	chr17	12016616	12016616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gctctgtgacttcggcatcaGtggacagcttgtggactcta	12	10	3	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	17	12016616	12016616	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.785	p.S262I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	55	0	0	36	17	32.08	-	-	-	T	12016616	G	T	12016616	3	4	612	1	0	0	0	0	1	0	0	0	9310	1029	36	4	778	4	MAP2K4	17	12016616	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		12016616	69178594	28	53311										
AKAP1	0	genome.wustl.edu	37	chr17	55197673	55197673	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	cagtgggtagacagctactaCacaagcctttgacccccatg	9	13	0	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	17	55197673	55197673	C	T	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	silent	c.2700	p.Y900	0.003	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	93	0	0	50	32	39.02	-	-	-	T	55197673	C	T	55197673	2	4	612	1	0	0	0	0	0	0	0	1	445	489	17	4		4	AKAP1	17	55197673	Silent	SNP	C	TCGA-BH-A204-01A-11D-A159-09	43181057	55197673	25997537	29	53312										
SPPL2B	0	genome.wustl.edu	37	chr19	2353046	2353046	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	cgcagccgcccagcgaagaaCcagccacatccccctggcct	9	20	0	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	2353046	2353046	C	G	SNP	SPPL2B	ENST00000452401	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206	18	0	0	14	6	30	-	-	-	G	2353046	C	G	2353046	1	3	612	0	1	0	0	0	0	0	0	0	15180	507	18	4		4	SPPL2B	19	2353046	RNA	SNP	C	TCGA-BH-A204-01A-11D-A159-09		2353046	56775937	30	53313										
ZNF180	0	genome.wustl.edu	37	chr19	44980904	44980904	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tagggcttttctccagtatgAgttctctgatgtacaacaag	9	8	2	2			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	44980904	44980904	A	T	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	silent	c.1794	p.T598	0.388	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	88	0	0	38	47	55.29	-	-	-	T	44980904	A	T	44980904	2	4	612	1	0	0	0	0	0	0	0	1	17844	291	11	5		5	ZNF180	19	44980904	Silent	SNP	A	TCGA-BH-A204-01A-11D-A159-09	42627858	44980904	14148079	31	53314										
ARAF	0	genome.wustl.edu	37	chrX	47429359	47429359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	gtcagacgtctatgcctacgGggttgtgctctacgagctta	12	10	3	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	47429359	47429359	G	A	SNP	ARAF	ENST00000377045	human	ensembl	69_37n	1	known	missense	c.1487	p.G496E	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ARAF	HGNC	ENSG00000078061	37	0	0	27	22	44.9	-	-	-	A	47429359	G	A	47429359	3	1	612	1	0	0	0	0	1	0	0	0	839	1232	43	4	1537	4	ARAF	23	47429359	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09		47429359	107841201	32	53315										
ABCB7	0	genome.wustl.edu	37	chrX	74273323	74273323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	cccatttggggttatcatggTtctgcacacggctgctctgt	11	11	3	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	74273323	74273323	T	C	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.2144	p.N715S	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	148	0	0	119	61	33.89	-	-	-	C	74273323	T	C	74273323	3	2	612	1	0	0	0	0	1	0	0	0	46	1725	60	5	121	5	ABCB7	23	74273323	Missense_Mutation	SNP	T	TCGA-BH-A204-01A-11D-A159-09	26843964	74273323	80997237	33	53316										
MORC4	0	genome.wustl.edu	37	chrX	106221352	106221352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tcaaaagattttatgagtcgGttgttatgatacatcattat	7	4	2	3			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	106221352	106221352	G	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	missense	c.1014	p.N338K	1.000	NULL	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	136	0	0	85	58	40.56	-	-	-	T	106221352	G	T	106221352	3	4	612	1	0	0	0	0	1	0	0	0	9776	1252	44	4	1839	4	MORC4	23	106221352	Missense_Mutation	SNP	G	TCGA-BH-A204-01A-11D-A159-09	31948029	106221352	49049208	34	53317										
STAG2	0	genome.wustl.edu	37	chrX	123184970	123184970	+	Splice_Site	DEL	G	G	-													0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	tttttttttttttttttttaGcaaggtgaagtaagactcaa							TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	123184970	123184970	G	-	DEL	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	splice_site_del	c.1018-1	e10-1	1.000	-	-	-	no_errors	STAG2	HGNC	ENSG00000101972	9	0	0	3	2	33.33	-	-	-	-	123184970	G	-	123184970	8	5	612	1	0	1	0	1	0	0	1	0	15334	985	34	0	1055	0	STAG2	23	123184970	Splice_Site	DEL	G	TCGA-BH-A204-01A-11D-A159-09	16963618	123184970	32085590	35	53318										
FAM127C	0	genome.wustl.edu	37	chrX	134156443	134156443	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	agcgacgcgccgcgggccggAggggccgagccaggagggcc	21	14	0	0			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	134156443	134156443	A	C	SNP	FAM127C	ENST00000391440	human	ensembl	69_37n	-1	known	missense	c.47	p.L16R	0.000	NULL	NULL	-	no_errors	FAM127C	HGNC	ENSG00000212747	43	0	0	34	9	20.45	-	-	-	C	134156443	A	C	134156443	3	2	612	1	0	0	0	0	1	0	0	0	5473	304	11	5	298	5	FAM127C	23	134156443	Missense_Mutation	SNP	A	TCGA-BH-A204-01A-11D-A159-09	10971473	134156443	21114117	36	53319										
FAM58A	0	genome.wustl.edu	37	chrX	152858123	152858123	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.719960278053625	0	0.759958071278826	0.4	0.991179622791967	0	agggcccaggcggtgacggcAacaggggtccgctgccagct	17	13	0	1			TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	152858123	152858123	A	G	SNP	FAM58A	ENST00000440428	human	ensembl	69_37n	-1	novel	missense	c.175	p.C59R	0.882	superfamily_Cyclin-like	superfamily_Cyclin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM58A	HGNC	ENSG00000147382	29	0	0	19	10	34.48	-	-	-	G	152858123	A	G	152858123	3	3	612	1	0	0	0	0	1	0	0	0	5635	117	5	5	256	5	FAM58A	23	152858123	Missense_Mutation	SNP	A	TCGA-BH-A204-01A-11D-A159-09	18701680	152858123	2412437	37	53320										
TNFRSF9	0	genome.wustl.edu	37	chr1	7993230	7993231	+	Frame_Shift_Ins	INS	-	-	ATAT													0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gttaatcttacgttgtttgaINSatatatacaggagtttcttt							TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	7993230	7993231	-	ATAT	INS	TNFRSF9	ENST00000377507	human	ensembl	69_37n	-1	known	frame_shift_ins	c.671_670	p.F224fs	0.918:0.008	prints_TNFR_9	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	74	0	0	18	2	10	-	-	-	ATAT	7993231	-	ATAT	7993230	7	5	613	1	0	1	1	0	0	0	0	0	16395	246	9	0	104	0	TNFRSF9	1	7993230	Frame_Shift_Ins	INS	-	TCGA-BH-A208-01A-11D-A159-09		7993230	241257391	1	53321										
RERE	0	genome.wustl.edu	37	chr1	8421432	8421432	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gggggctggggatgctcgggGacgtgctgcgattgtcctgg	21	8	0	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	8421432	8421432	G	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.2135	p.S712Y	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	140	0	0	59	25	29.76	-	-	-	T	8421432	G	T	8421432	3	4	613	1	0	0	0	0	1	0	0	0	13314	1174	41	2	2589	2	RERE	1	8421432	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	428202	8421432	240829189	2	53322										
HDAC1	0	genome.wustl.edu	37	chr1	32793146	32793146	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tctgatcctaggtatcaccaGagggtgctgtacattgacat	10	9	2	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	32793146	32793146	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	silent	c.504	p.Q168	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	27	0	0	11	5	31.25	-	-	-	A	32793146	G	A	32793146	2	1	613	1	0	0	0	0	0	0	0	1	7055	933	33	2		2	HDAC1	1	32793146	Silent	SNP	G	TCGA-BH-A208-01A-11D-A159-09	24371714	32793146	216457475	3	53323										
CSMD2	0	genome.wustl.edu	37	chr1	34002643	34002643	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tggtagccctgagaattgttCtgtatcccaaactgtggcac	10	10	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	34002643	34002643	C	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.9858	p.Q3286H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	95	0	0	31	11	26.19	-	-	-	G	34002643	C	G	34002643	3	3	613	1	0	0	0	0	1	0	0	0	3977	912	32	2	1073	2	CSMD2	1	34002643	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	1209497	34002643	215247978	4	53324										
SPATA6	0	genome.wustl.edu	37	chr1	48918720	48918720	+	Frame_Shift_Del	DEL	T	T	-													0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ggaaaagtggctgggacacaTtgtgtctttttgtattggcc							TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	48918720	48918720	T	-	DEL	SPATA6	ENST00000371847	human	ensembl	69_37n	-1	known	frame_shift_del	c.135	p.Q45fs	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122	129	0	0	54	7	11.29	-	-	-	-	48918720	T	-	48918720	7	5	613	1	0	1	0	1	0	0	0	0	15104	1490	52	0	1379	0	SPATA6	1	48918720	Frame_Shift_Del	DEL	T	TCGA-BH-A208-01A-11D-A159-09	14916077	48918720	200331901	5	53325										
WDR78	0	genome.wustl.edu	37	chr1	67371056	67371056	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tctttggttgtgtggcattgTtcctatataagaaaaataaa	8	4	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	67371056	67371056	T	C	SNP	WDR78	ENST00000371026	human	ensembl	69_37n	-1	known	missense	c.173	p.N58S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	176	0	0	47	13	21.67	-	-	-	C	67371056	T	C	67371056	3	2	613	1	0	0	0	0	1	0	0	0	17425	1725	60	5	2494	5	WDR78	1	67371056	Missense_Mutation	SNP	T	TCGA-BH-A208-01A-11D-A159-09	18452336	67371056	181879565	6	53326										
CFH	0	genome.wustl.edu	37	chr1	196654268	196654268	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ttaaacacagaactggagatGaaatcacgtaccagtgtaga	9	7	1	4			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	196654268	196654268	G	A	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.865	p.E289K	0.791	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	55	0	0	6	7	53.85	-	-	-	A	196654268	G	A	196654268	3	1	613	1	0	0	0	0	1	0	0	0	3312	1291	45	2	891	2	CFH	1	196654268	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	129283212	196654268	52596353	7	53327										
SHISA4	0	genome.wustl.edu	37	chr1	201859608	201859608	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gaccatagcaggcatcgcctCagctgtgatcctctttgttg	10	12	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	201859608	201859608	C	G	SNP	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	nonsense	c.272	p.S91*	0.995	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	128	0	0	48	9	15.79	-	-	-	G	201859608	C	G	201859608	4	3	613	1	0	0	0	0	0	1	0	0	14371	838	29	2	282	2	SHISA4	1	201859608	Nonsense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	5205340	201859608	47391013	8	53328										
CTSE	0	genome.wustl.edu	37	chr1	206331149	206331149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tactcagtctttgaccgtggGaataaccgtgtgggactggc	13	9	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	206331149	206331149	G	A	SNP	CTSE	ENST00000360218	human	ensembl	69_37n	1	known	missense	c.1013	p.G338E	0.390	NULL	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	CTSE	HGNC	ENSG00000196188	128	0	0	31	8	20.51	-	-	-	A	206331149	G	A	206331149	3	1	613	1	0	0	0	0	1	0	0	0	4065	1174	41	2	1189	2	CTSE	1	206331149	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	4471541	206331149	42919472	9	53329										
CR2	0	genome.wustl.edu	37	chr1	207648485	207648485	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gactgcaatcctggcttcatCatgaatggtagtcgcgtgat	11	9	2	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	207648485	207648485	C	G	SNP	CR2	ENST00000367057	human	ensembl	69_37n	1	known	missense	c.2640	p.I880M	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	168	0	0	53	15	22.06	-	-	-	G	207648485	C	G	207648485	3	3	613	1	0	0	0	0	1	0	0	0	3872	816	29	2	2694	2	CR2	1	207648485	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	1317336	207648485	41602136	10	53330										
ALMS1	0	genome.wustl.edu	37	chr2	73717343	73717343	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ctgtgggggtatttaattctCatttcactgaagaacaaaat	8	6	2	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73717343	73717343	C	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.8254	p.H2752D	0.998	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	87	0	0	19	6	24	-	-	-	G	73717343	C	G	73717343	3	3	613	1	0	0	0	0	1	0	0	0	535	826	29	2	8292	2	ALMS1	2	73717343	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		73717343	169482030	11	53331			1	93		3	3	715	C		7.454958e-07
ALMS1	0	genome.wustl.edu	37	chr2	73717959	73717959	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	aggtcaggattctatagcttCagaccttccgtctcccattt	7	12	4	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73717959	73717959	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.8870	p.S2957L	0.398	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	115	0	0	27	9	25	-	-	-	T	73717959	C	T	73717959	3	4	613	1	0	0	0	0	1	0	0	0	535	838	29	2	8908	2	ALMS1	2	73717959	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	616	73717959	169481414	12	53332			1	93		3	3	715	C		7.454958e-07
ALMS1	0	genome.wustl.edu	37	chr2	73718057	73718057	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	attttccccttcctcaaggtCaggattgtgtagtggaaaag	10	8	2	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73718057	73718057	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	nonsense	c.8968	p.Q2990*	0.944	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	102	0	0	18	8	30.77	-	-	-	T	73718057	C	T	73718057	4	4	613	1	0	0	0	0	0	1	0	0	535	827	29	2	9006	2	ALMS1	2	73718057	Nonsense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	98	73718057	169481316	13	53333			1	93		3	3	715	C		7.454958e-07
MRPL35	0	genome.wustl.edu	37	chr2	86434315	86434315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tatatttttagaatggccccCgtgcttccaagtgtcctgaa	8	10	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	86434315	86434315	C	T	SNP	MRPL35	ENST00000337109	human	ensembl	69_37n	1	known	silent	c.243	p.P81	0.988	NULL	pfam_Ribosomal_L35	-	no_errors	MRPL35	HGNC	ENSG00000132313	63	0	0	15	11	42.31	-	-	-	T	86434315	C	T	86434315	2	4	613	1	0	0	0	0	0	0	0	1	9870	639	23	1		1	MRPL35	2	86434315	Silent	SNP	C	TCGA-BH-A208-01A-11D-A159-09	12716258	86434315	156765058	14	53334										
LRP1B	0	genome.wustl.edu	37	chr2	141819658	141819658	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	agtgtgtctattttttccttGatagtccactactcccacat	5	11	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	141819658	141819658	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.Q400*	0.985	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	275	0	0	67	12	15.19	-	-	-	A	141819658	G	A	141819658	4	1	613	1	0	0	0	0	0	1	0	0	9021	1299	45	2	12937	2	LRP1B	2	141819658	Nonsense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	55385343	141819658	101379715	15	53335										
CCDC48	0	genome.wustl.edu	37	chr3	128758648	128758648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	acagccctcggcaccagcctCtgcagcagctgcgctcacca	9	19	2	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	3	128758648	128758648	C	G	SNP	CCDC48	ENST00000436022	human	ensembl	69_37n	1	known	missense	c.443	p.S148C	0.003	NULL	NULL	-	no_errors	CCDC48	HGNC	ENSG00000114654	27	0	0	12	7	36.84	-	-	-	G	128758648	C	G	128758648	3	3	613	1	0	0	0	0	1	0	0	0	2846	913	32	2	1784	2	CCDC48	3	128758648	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		128758648	69263782	16	53336										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	24	22	47.83	-	-	-	G	178952085	A	G	178952085	3	3	613	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A208-01A-11D-A159-09	50193437	178952085	19070345	17	53337										
ENPEP	0	genome.wustl.edu	37	chr4	111474542	111474542	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tacagtcattcgatatatctCatataacagctatgggaaga	7	7	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	4	111474542	111474542	C	T	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.2573	p.S858L	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	251	0	0	50	26	34.21	-	-	-	T	111474542	C	T	111474542	3	4	613	1	0	0	0	0	1	0	0	0	5165	838	29	2	2643	2	ENPEP	4	111474542	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		111474542	79679734	18	53338										
TRPC7	0	genome.wustl.edu	37	chr5	135692820	135692820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ctctaggtgctcgttgcccaCggccagctgcagagcgttct	12	14	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	5	135692820	135692820	C	T	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	missense	c.256	p.V86M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	51	0	0	9	5	35.71	-	-	-	T	135692820	C	T	135692820	3	4	613	1	0	0	0	0	1	0	0	0	16680	536	19	1	2376	1	TRPC7	5	135692820	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		135692820	45222440	19	53339										
SYNE1	0	genome.wustl.edu	37	chr6	152558036	152558036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	atgctgctttccaccacctcCagctgtctgctgagctcctg	8	16	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	6	152558036	152558036	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.20115	p.L6705	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	87	0	0	25	5	16.67	-	-	-	T	152558036	C	T	152558036	2	4	613	1	0	0	0	0	0	0	0	1	15537	581	21	4		4	SYNE1	6	152558036	Silent	SNP	C	TCGA-BH-A208-01A-11D-A159-09		152558036	18557031	20	53340										
HUS1	0	genome.wustl.edu	37	chr7	48018139	48018139	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tgttagctctaaataaatctCattgttttctgcagagacac	6	8	3	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	48018139	48018139	C	T	SNP	HUS1	ENST00000258774	human	ensembl	69_37n	-1	known	missense	c.232	p.E78K	1.000	pfam_Hus1,pirsf_Cell_cycle_HUS1	pfam_Hus1,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1	HGNC	ENSG00000136273	178	0	0	51	16	23.88	-	-	-	T	48018139	C	T	48018139	3	4	613	1	0	0	0	0	1	0	0	0	7513	835	29	2	634	2	HUS1	7	48018139	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		48018139	111120524	21	53341										
MGAM	0	genome.wustl.edu	37	chr7	141754683	141754683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	atccatttgggattgaaattCgccggaagagtacaggcact	11	8	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	141754683	141754683	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.3289	p.R1097C	0.098	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	87	0	0	29	7	19.44	-	-	-	T	141754683	C	T	141754683	3	4	613	1	0	0	0	0	1	0	0	0	9612	884	31	1	3391	1	MGAM	7	141754683	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	93736544	141754683	17383980	22	53342										
AGAP3	0	genome.wustl.edu	37	chr7	150840935	150840935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tgatccagcatggctgccctGgggagggctgtggcttagcg	17	10	0	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	150840935	150840935	G	A	SNP	AGAP3	ENST00000397238	human	ensembl	69_37n	1	known	missense	c.2641	p.G881R	0.997	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612	15	0	0	9	5	35.71	-	-	-	A	150840935	G	A	150840935	3	1	613	1	0	0	0	0	1	0	0	0	369	1348	47	4	2778	4	AGAP3	7	150840935	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	9086252	150840935	8297728	23	53343										
PROSC	0	genome.wustl.edu	37	chr8	37633453	37633453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	cagctgttattgtccctccgGgaggagctgtgtaaaaagct	12	9	0	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	37633453	37633453	G	A	SNP	PROSC	ENST00000521494	human	ensembl	69_37n	1	putative	missense	c.521	p.G174E	0.186	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PROSC	HGNC	ENSG00000147471	132	0	0	46	26	36.11	-	-	-	A	37633453	G	A	37633453	3	1	613	1	0	0	0	0	1	0	0	0	12640	1219	43	4	641	4	PROSC	8	37633453	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09		37633453	108730569	24	53344										
SGK3	0	genome.wustl.edu	37	chr8	67740896	67740896	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	cccaccttcacagctacactCtacctcacagaacatcaacc	2	19	4	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	67740896	67740896	C	G	SNP	SGK3	ENST00000262211	human	ensembl	69_37n	1	known	missense	c.425	p.S142C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK3	HGNC	ENSG00000104205	293	0	0	96	20	17.24	-	-	-	G	67740896	C	G	67740896	3	3	613	1	0	0	0	0	1	0	0	0	14300	913	32	2	447	2	SGK3	8	67740896	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	30107443	67740896	78623126	25	53345										
SULF1	0	genome.wustl.edu	37	chr8	70550877	70550877	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	atatgaatacagatccttatCaggtaagacaatatatgttc	6	6	1	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	70550877	70550877	C	T	SNP	SULF1	ENST00000260128	human	ensembl	69_37n	1	known	nonsense	c.2425	p.Q809*	1.000	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	229	0	0	66	15	18.52	-	-	-	T	70550877	C	T	70550877	4	4	613	1	0	0	0	0	0	1	0	0	15461	827	29	2	2487	2	SULF1	8	70550877	Nonsense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	2809981	70550877	75813145	26	53346										
SLC39A4	0	genome.wustl.edu	37	chr8	145638248	145638248	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	agtgccacgtagagaccagcGaaggccgtgagcgcggaggc	17	11	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	145638248	145638248	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	69_37n	-1	known	silent	c.1710	p.F570	0.924	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804	12	0	0	3	6	66.67	-	-	-	A	145638248	G	A	145638248	2	1	613	1	0	0	0	0	0	0	0	1	14709	1049	37	1		1	SLC39A4	8	145638248	Silent	SNP	G	TCGA-BH-A208-01A-11D-A159-09	75087371	145638248	725774	27	53347										
RUFY2	0	genome.wustl.edu	37	chr10	70152941	70152941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ataattcttttggtctaataTggcagcaatttgaacattcc	6	7	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	70152941	70152941	T	C	SNP	RUFY2	ENST00000388768	human	ensembl	69_37n	-1	known	missense	c.709	p.I237V	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130	161	0	0	20	5	20	-	-	-	C	70152941	T	C	70152941	3	2	613	1	0	0	0	0	1	0	0	0	13825	1464	51	5	1377	5	RUFY2	10	70152941	Missense_Mutation	SNP	T	TCGA-BH-A208-01A-11D-A159-09		70152941	65381806	28	53348										
DNTT	0	genome.wustl.edu	37	chr10	98087355	98087355	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	accatgacaggagggttccgGaggtaaataacttgggtggc	15	7	0	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	98087355	98087355	G	C	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	silent	c.1005	p.R335	0.990	pfam_Nucleotidyltransferase,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	108	0	0	36	6	14.29	-	-	-	C	98087355	G	C	98087355	2	2	613	1	0	0	0	0	0	0	0	1	4715	1161	41	2		2	DNTT	10	98087355	Silent	SNP	G	TCGA-BH-A208-01A-11D-A159-09	27934414	98087355	37447392	29	53349										
RTN3	0	genome.wustl.edu	37	chr11	63487595	63487595	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	caggtgaaagagaaatcaaaGagattcccagttgtgagaga	12	5	1	5			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	63487595	63487595	G	C	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	missense	c.1621	p.E541Q	0.201	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	85	0	0	18	4	18.18	-	-	-	C	63487595	G	C	63487595	3	2	613	1	0	0	0	0	1	0	0	0	13813	943	33	2	1631	2	RTN3	11	63487595	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09		63487595	71518921	30	53350										
FOLH1B	0	genome.wustl.edu	37	chr11	89420578	89420578	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	aaagttggactaaaaaaagtCcttccccagagttcagtggc	9	9	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	89420578	89420578	C	T	SNP	FOLH1B	ENST00000525540	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	159	1	0.62	35	21	37.5	-	-	-	T	89420578	C	T	89420578	1	4	613	0	1	0	0	0	0	0	0	0	6026	855	30	2		2	FOLH1B	11	89420578	RNA	SNP	C	TCGA-BH-A208-01A-11D-A159-09	25932983	89420578	45585938	31	53351										
KIRREL3	0	genome.wustl.edu	37	chr11	126391325	126391325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ttcaggtggtgctcccctgaCaggtggttccctaccaccag	11	14	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	126391325	126391325	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	69_37n	-1	known	silent	c.318	p.L106	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL3	HGNC	ENSG00000149571	53	0	0	28	9	24.32	-	-	-	T	126391325	C	T	126391325	2	4	613	1	0	0	0	0	0	0	0	1	8379	465	17	4		4	KIRREL3	11	126391325	Silent	SNP	C	TCGA-BH-A208-01A-11D-A159-09	36970747	126391325	8615191	32	53352										
CLEC12A	0	genome.wustl.edu	37	chr12	10137481	10137481	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tctttcagggttataagaaaCgcacctgacttaaataacat	6	8	2	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	10137481	10137481	C	T	SNP	CLEC12A	ENST00000355690	human	ensembl	69_37n	1	known	silent	c.684	p.N228	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322	139	1	0.71	33	9	21.43	-	-	-	T	10137481	C	T	10137481	2	4	613	1	0	0	0	0	0	0	0	1	3527	535	19	1		1	CLEC12A	12	10137481	Silent	SNP	C	TCGA-BH-A208-01A-11D-A159-09		10137481	123714414	33	53353										
OVCH1	0	genome.wustl.edu	37	chr12	29649525	29649525	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gtcactgttgaatttctccaActactaattctagagaagaa	6	8	3	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	29649525	29649525	A	G	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	silent	c.147	p.S49	0.018	superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	103	0	0	31	14	31.11	-	-	-	G	29649525	A	G	29649525	2	3	613	1	0	0	0	0	0	0	0	1	11396	40	2	5		5	OVCH1	12	29649525	Silent	SNP	A	TCGA-BH-A208-01A-11D-A159-09	19512044	29649525	104202370	34	53354										
SLC26A10	0	genome.wustl.edu	37	chr12	58018733	58018733	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ggcagtttcgctgcaacctgGagtggcacctggggctcgga	16	11	0	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	58018733	58018733	G	T	SNP	SLC26A10	ENST00000320442	human	ensembl	69_37n	1	known	nonsense	c.1312	p.E438*	0.006	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A10	HGNC	ENSG00000135502	166	0	0	44	22	33.33	-	-	-	T	58018733	G	T	58018733	4	4	613	1	0	0	0	0	0	1	0	0	14604	1175	41	2	1350	2	SLC26A10	12	58018733	Nonsense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	28369208	58018733	75833162	35	53355										
PDS5B	0	genome.wustl.edu	37	chr13	33281097	33281097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tattaaacaagtgaacaaatCaatagatggaacagcagatg	8	5	1	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	13	33281097	33281097	C	T	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.1883	p.S628L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	83	0	0	24	6	20	-	-	-	T	33281097	C	T	33281097	3	4	613	1	0	0	0	0	1	0	0	0	11765	838	29	2	1949	2	PDS5B	13	33281097	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		33281097	81888781	36	53356										
MYO16	0	genome.wustl.edu	37	chr13	109753162	109753162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	actggctgatacattcctgcGtgagaagaaggaacagtcag	12	8	1	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	13	109753162	109753162	G	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.3299	p.R1100L	0.002	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	81	0	0	28	7	20	-	-	-	T	109753162	G	T	109753162	3	4	613	1	0	0	0	0	1	0	0	0	10136	1145	40	3	3405	3	MYO16	13	109753162	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	76472065	109753162	5416716	37	53357										
SPPL2A	0	genome.wustl.edu	37	chr15	51024862	51024862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gaaagcaatccccaagatatCctgtaaaatccaagcccacc	5	14	0	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	15	51024862	51024862	C	T	SNP	SPPL2A	ENST00000261854	human	ensembl	69_37n	-1	known	missense	c.952	p.D318N	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Peptidase_A22	-	no_errors	SPPL2A	HGNC	ENSG00000138600	179	0	0	27	8	22.86	-	-	-	T	51024862	C	T	51024862	3	4	613	1	0	0	0	0	1	0	0	0	15179	855	30	2	638	2	SPPL2A	15	51024862	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		51024862	51506530	38	53358										
RNF40	0	genome.wustl.edu	37	chr16	30778177	30778177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	catcgagtttgagcagaatcTggcggccaacgagcaggcgg	15	10	1	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	16	30778177	30778177	T	A	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.1409	p.L470Q	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	55	0	0	24	4	14.29	-	-	-	A	30778177	T	A	30778177	3	1	613	1	0	0	0	0	1	0	0	0	13579	1580	55	5	1447	5	RNF40	16	30778177	Missense_Mutation	SNP	T	TCGA-BH-A208-01A-11D-A159-09		30778177	59576576	39	53359										
TP53	0	genome.wustl.edu	37	chr17	7578290	7578290	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	atgctgaggaggggccagacCtaagagcaatcagtgaggaa	15	7	1	4			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	7578290	7578290	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	103	0	0	33	9	21.43	-	-	-	G	7578290	C	G	7578290	5	3	613	1	0	0	0	0	0	0	1	0	16477	695	24	4	735	4	TP53	17	7578290	Splice_Site	SNP	C	TCGA-BH-A208-01A-11D-A159-09		7578290	73616920	40	53360										
PSMD11	0	genome.wustl.edu	37	chr17	30781593	30781593	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	cagctcgcctggtccgatctCttcttgatctgtttcttgat	8	12	4	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	30781593	30781593	C	G	SNP	PSMD11	ENST00000261712	human	ensembl	69_37n	1	known	missense	c.274	p.L92V	1.000	NULL	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD11	HGNC	ENSG00000108671	167	0	0	20	23	53.49	-	-	-	G	30781593	C	G	30781593	3	3	613	1	0	0	0	0	1	0	0	0	12774	913	32	2	284	2	PSMD11	17	30781593	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	23203303	30781593	50413617	41	53361										
GH2	0	genome.wustl.edu	37	chr17	61957656	61957656	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	caggagaggcactggggaggGgtcacagggatgccacccgg	19	10	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	61957656	61957656	G	A	SNP	GH2	ENST00000456543	human	ensembl	69_37n	-1	known	silent	c.675	p.T225	0.019	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	109	0	0	50	9	15.25	-	-	-	A	61957656	G	A	61957656	2	1	613	1	0	0	0	0	0	0	0	1	6420	1219	43	4		4	GH2	17	61957656	Silent	SNP	G	TCGA-BH-A208-01A-11D-A159-09	31176063	61957656	19237554	42	53362										
ZNF627	0	genome.wustl.edu	37	chr19	11728555	11728555	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tccgaatccatgaaagaactCacactggagagaaaccctat	7	11	1	3			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	11728555	11728555	C	G	SNP	ZNF627	ENST00000361113	human	ensembl	69_37n	1	known	missense	c.1237	p.H413D	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF627	HGNC	ENSG00000198551	83	0	0	31	6	16.22	-	-	-	G	11728555	C	G	11728555	3	3	613	1	0	0	0	0	1	0	0	0	18147	826	29	2	1251	2	ZNF627	19	11728555	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09		11728555	47400428	43	53363										
CYP2B6	0	genome.wustl.edu	37	chr19	41510050	41510050	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gaaaaatcgccatggtcgacCcattcttccggggatatggt	11	10	1	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	41510050	41510050	C	G	SNP	CYP2B6	ENST00000324071	human	ensembl	69_37n	1	known	missense	c.316	p.P106A	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408	48	0	0	21	6	22.22	-	-	-	G	41510050	C	G	41510050	3	3	613	1	0	0	0	0	1	0	0	0	4195	623	22	4	322	4	CYP2B6	19	41510050	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	29781495	41510050	17618933	44	53364										
XRCC1	0	genome.wustl.edu	37	chr19	44055732	44055732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	tgaggccttacctctgggagGgcagccgccgacgcatgcgg	16	13	1	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	44055732	44055732	G	A	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	missense	c.1190	p.P397L	1.000	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	20	0	0	14	4	22.22	-	-	-	A	44055732	G	A	44055732	3	1	613	1	0	0	0	0	1	0	0	0	17549	1232	43	4	743	4	XRCC1	19	44055732	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	2545682	44055732	15073251	45	53365										
SIGLEC8	0	genome.wustl.edu	37	chr19	51958011	51958011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	cccgactgctgccagtgtcaCttgtgatacaggtcttgagg	12	11	2	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	51958011	51958011	C	G	SNP	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	missense	c.1075	p.V359L	0.003	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	126	0	0	53	12	18.46	-	-	-	G	51958011	C	G	51958011	3	3	613	1	0	0	0	0	1	0	0	0	14403	565	20	4	436	4	SIGLEC8	19	51958011	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	7902279	51958011	7170972	46	53366										
PCSK2	0	genome.wustl.edu	37	chr20	17446160	17446160	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	gactggaaaaccgtgcctgaGagattccactgtgtgggagg	15	8	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	20	17446160	17446160	G	C	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	1	known	missense	c.1392	p.E464D	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	68	0	0	17	13	43.33	-	-	-	C	17446160	G	C	17446160	3	2	613	1	0	0	0	0	1	0	0	0	11674	933	33	2	1434	2	PCSK2	20	17446160	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09		17446160	45579360	47	53367										
ASMT	0	genome.wustl.edu	37	chrX	1755428	1755428	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	aagtgctcacacctgctggaGaggatctaccacacttgcaa	9	12	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	1755428	1755428	G	C	SNP	ASMT	ENST00000381241	human	ensembl	69_37n	1	known	missense	c.885	p.E295D	0.000	pfam_O_MeTrfase_2,pirsf_O-MeTrfase_CAOMT-type	pfam_O_MeTrfase_2,pirsf_O-MeTrfase_CAOMT-type	-	no_errors	ASMT	HGNC	ENSG00000196433	237	0	0	80	20	20	-	-	-	C	1755428	G	C	1755428	3	2	613	1	0	0	0	0	1	0	0	0	1049	933	33	2	915	2	ASMT	23	1755428	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09		1755428	153515132	48	53368										
RP2	0	genome.wustl.edu	37	chrX	46696579	46696579	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	acggaaggctgacaaggagtCgcggcccgagaacgaggagg	18	9	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	46696579	46696579	C	G	SNP	RP2	ENST00000218340	human	ensembl	69_37n	1	known	missense	c.44	p.S15W	0.997	pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218	34	0	0	25	5	16.67	-	-	-	G	46696579	C	G	46696579	3	3	613	1	0	0	0	0	1	0	0	0	13620	893	31	3	46	3	RP2	23	46696579	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	44941151	46696579	108573981	49	53369										
MAGEE1	0	genome.wustl.edu	37	chrX	75651058	75651058	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	ccgtttggaaacctctaagaTgaaagccttgcgatatgtgg	11	8	1	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	75651058	75651058	T	C	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	missense	c.2735	p.M912T	0.998	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	114	0	0	45	8	15.09	-	-	-	C	75651058	T	C	75651058	3	2	613	1	0	0	0	0	1	0	0	0	9256	1464	51	5	2737	5	MAGEE1	23	75651058	Missense_Mutation	SNP	T	TCGA-BH-A208-01A-11D-A159-09	28954479	75651058	79619502	50	53370										
HDX	0	genome.wustl.edu	37	chrX	83724462	83724462	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	aagactgctggcttgagggtCgagcaatattaaccacattt	10	8	0	2			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	83724462	83724462	C	G	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.269	p.R90P	0.040	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	201	0	0	64	16	20	-	-	-	G	83724462	C	G	83724462	3	3	613	1	0	0	0	0	1	0	0	0	7077	884	31	3	1835	3	HDX	23	83724462	Missense_Mutation	SNP	C	TCGA-BH-A208-01A-11D-A159-09	8073404	83724462	71546098	51	53371										
ARMCX3	0	genome.wustl.edu	37	chrX	100880821	100880821	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	agggaactgctcagggcccaAgtaccatcttcactgggctc	11	13	3	0			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	100880821	100880821	A	G	SNP	ARMCX3	ENST00000341189	human	ensembl	69_37n	1	known	silent	c.852	p.Q284	0.991	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX3	HGNC	ENSG00000102401	52	0	0	21	4	16	-	-	-	G	100880821	A	G	100880821	2	3	613	1	0	0	0	0	0	0	0	1	965	69	3	5		5	ARMCX3	23	100880821	Silent	SNP	A	TCGA-BH-A208-01A-11D-A159-09	17156359	100880821	54389739	52	53372										
CHRDL1	0	genome.wustl.edu	37	chrX	110035325	110035325	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.377358490566038	20	3.59594582839823e-06	3.40474620962426	4.26539039039039	2.73119858989424	0.752371134563909	1	14	aagacacttacgttttacttGctctgttttgcctccttcta	5	11	2	1			TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	110035325	110035325	G	C	SNP	CHRDL1	ENST00000372042	human	ensembl	69_37n	-1	known	missense	c.85	p.Q29E	1.000	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938	161	0	0	54	12	18.18	-	-	-	C	110035325	G	C	110035325	3	2	613	1	0	0	0	0	1	0	0	0	3402	1328	46	4	1335	4	CHRDL1	23	110035325	Missense_Mutation	SNP	G	TCGA-BH-A208-01A-11D-A159-09	9154504	110035325	45235235	53	53373										
NBPF1	0	genome.wustl.edu	37	chr1	16891354	16891354	+	RNA	DEL	T	T	-													0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ttcttttcttccccttctccTtcttttcttcgttgatcttc							TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	16891354	16891354	T	-	DEL	NBPF1	ENST00000401007	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	40	0	0	11	2	15.38	-	-	-	-	16891354	T	-	16891354	6	5	614	0	1	1	0	1	0	0	0	0	10264	1608	56	0		0	NBPF1	1	16891354	RNA	DEL	T	TCGA-BH-A209-01A-11D-A17G-09		16891354	232359267	1	53374										
SLC6A9	0	genome.wustl.edu	37	chr1	44476555	44476555	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tcgctgggcacagcaccattCtgtggggacaggagagaagc	15	10	1	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	44476555	44476555	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	splice_site	c.250-1	e3-1	1.000	-	-	-	no_errors	SLC6A9	HGNC	ENSG00000196517	70	0	0	33	16	32.65	-	-	-	T	44476555	C	T	44476555	5	4	614	1	0	0	0	0	0	0	1	0	14780	927	32	2	1919	2	SLC6A9	1	44476555	Splice_Site	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	27585201	44476555	204774066	2	53375										
IL12RB2	0	genome.wustl.edu	37	chr1	67855809	67855809	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ctaagaaatatcccattgcaGaggtaaggtacaattcctct	7	9	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	67855809	67855809	G	A	SNP	IL12RB2	ENST00000262345	human	ensembl	69_37n	1	known	missense	c.2044	p.E682K	1.000	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	63	0	0	37	8	17.78	-	-	-	A	67855809	G	A	67855809	3	1	614	1	0	0	0	0	1	0	0	0	7681	943	33	2	2098	2	IL12RB2	1	67855809	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	23379254	67855809	181394812	3	53376										
PIP5K1A	0	genome.wustl.edu	37	chr1	151219428	151219428	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aaagcttgaagttgcagagtCagagttcacccatgtgagta	11	7	2	4			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	151219428	151219428	C	T	SNP	PIP5K1A	ENST00000414290	human	ensembl	69_37n	1	known	nonsense	c.499	p.Q167*	0.994	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	163	0	0	126	61	32.62	-	-	-	T	151219428	C	T	151219428	4	4	614	1	0	0	0	0	0	1	0	0	12013	838	29	2	1731	2	PIP5K1A	1	151219428	Nonsense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	83363619	151219428	98031193	4	53377										
SRGAP2	0	genome.wustl.edu	37	chr1	206611447	206611447	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	catgacctgatggcctgcgtCagtaagtaccattctggctt	10	11	2	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	206611447	206611447	C	A	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	missense	c.1507	p.H503N	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	67	0	0	26	19	42.22	-	-	-	A	206611447	C	A	206611447	3	1	614	1	0	0	0	0	1	0	0	0	15237	840	29	2	1557	2	SRGAP2	1	206611447	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	55392019	206611447	42639174	5	53378										
RPS6KC1	0	genome.wustl.edu	37	chr1	213303216	213303216	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aggaagggagttgatttactCctagaaggtgttcaaggtat	13	4	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	213303216	213303216	C	T	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	1	known	silent	c.819	p.L273	0.999	pfam_MIT,smart_MIT	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	48	0	0	38	7	15.56	-	-	-	T	213303216	C	T	213303216	2	4	614	1	0	0	0	0	0	0	0	1	13744	842	30	2		2	RPS6KC1	1	213303216	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	6691769	213303216	35947405	6	53379										
ZNF496	0	genome.wustl.edu	37	chr1	247464393	247464393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cttcttggaggtctgcacctCgcctccggcctcggtgctgc	12	16	2	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	1	247464393	247464393	C	T	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	missense	c.1300	p.E434K	0.033	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	16	0	0	15	5	25	-	-	-	T	247464393	C	T	247464393	3	4	614	1	0	0	0	0	1	0	0	0	18041	893	31	1	575	1	ZNF496	1	247464393	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	34161177	247464393	1786228	7	53380										
PREB	0	genome.wustl.edu	37	chr2	27355593	27355593	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aggtcccggcccacggttacCaactagttaggaataaagat	10	10	0	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	2	27355593	27355593	C	T	SNP	PREB	ENST00000260643	human	ensembl	69_37n	-1	known	silent	c.630	p.L210	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073	61	0	0	35	8	18.6	-	-	-	T	27355593	C	T	27355593	2	4	614	1	0	0	0	0	0	0	0	1	12551	593	21	4		4	PREB	2	27355593	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		27355593	215843780	8	53381										
ELMOD3	0	genome.wustl.edu	37	chr2	85604484	85604484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	caggagcgaatccagccacaGacctgagaggcgcaggcttc	13	13	0	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	2	85604484	85604484	G	C	SNP	ELMOD3	ENST00000315658	human	ensembl	69_37n	1	known	missense	c.625	p.D209H	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD3	HGNC	ENSG00000115459	70	0	0	30	11	26.83	-	-	-	C	85604484	G	C	85604484	3	2	614	1	0	0	0	0	1	0	0	0	5107	942	33	2	655	2	ELMOD3	2	85604484	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	58248891	85604484	157594889	9	53382										
ITGA6	0	genome.wustl.edu	37	chr2	173335724	173335724	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	attgttcgtgtagagcaaaaGaataacactttttttgacat	7	5	0	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	2	173335724	173335724	G	C	SNP	ITGA6	ENST00000264106	human	ensembl	69_37n	1	known	missense	c.666	p.K222N	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	58	0	0	31	10	24.39	-	-	-	C	173335724	G	C	173335724	3	2	614	1	0	0	0	0	1	0	0	0	7934	933	33	2	684	2	ITGA6	2	173335724	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	87731240	173335724	69863649	10	53383										
MAP2	0	genome.wustl.edu	37	chr2	210558653	210558653	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aagaagcaacaaaaagcattGagccaggcagtgattactat	9	7	0	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	2	210558653	210558653	G	C	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.1759	p.E587Q	0.758	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	22	0	0	17	9	34.62	-	-	-	C	210558653	G	C	210558653	3	2	614	1	0	0	0	0	1	0	0	0	9306	1291	45	2	1773	2	MAP2	2	210558653	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	37222929	210558653	32640720	11	53384										
CNTN6	0	genome.wustl.edu	37	chr3	1415621	1415621	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tttttagttccagaaattctCaatggtaagacatacaatgc	6	7	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	1415621	1415621	C	G	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	silent	c.1959	p.L653	0.179	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	103	0	0	69	20	22.47	-	-	-	G	1415621	C	G	1415621	2	3	614	1	0	0	0	0	0	0	0	1	3675	813	29	2		2	CNTN6	3	1415621	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		1415621	196606809	12	53385										
CMTM7	0	genome.wustl.edu	37	chr3	32493950	32493950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tgtcctataagatctcgtgtGtaacccagtccacaggtgag	10	10	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	32493950	32493950	G	A	SNP	CMTM7	ENST00000334983	human	ensembl	69_37n	1	known	missense	c.499	p.V167I	0.241	NULL	pfam_MARVEL-like_dom	-	no_errors	CMTM7	HGNC	ENSG00000153551	106	0	0	78	32	29.09	-	-	-	A	32493950	G	A	32493950	3	1	614	1	0	0	0	0	1	0	0	0	3618	1377	48	4	513	4	CMTM7	3	32493950	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	31078329	32493950	165528480	13	53386										
LMOD3	0	genome.wustl.edu	37	chr3	69171352	69171352	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ttatgattgaagtttcctgtCggtggcttgtcagtttgatc	11	6	1	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	69171352	69171352	C	T	SNP	LMOD3	ENST00000420581	human	ensembl	69_37n	-1	known	silent	c.186	p.P62	0.003	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380	80	0	0	66	18	21.43	-	-	-	T	69171352	C	T	69171352	2	4	614	1	0	0	0	0	0	0	0	1	8914	871	31	1		1	LMOD3	3	69171352	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	36677402	69171352	128851078	14	53387										
IGSF11	0	genome.wustl.edu	37	chr3	118621736	118621736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gcattggaagaggttagtgtGttgttgtccgaggaggaaat	16	3	0	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	118621736	118621736	G	T	SNP	IGSF11	ENST00000393775	human	ensembl	69_37n	-1	known	missense	c.927	p.N309K	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF11	HGNC	ENSG00000144847	40	0	0	33	4	10.81	-	-	-	T	118621736	G	T	118621736	3	4	614	1	0	0	0	0	1	0	0	0	7652	1368	48	4	372	4	IGSF11	3	118621736	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	49450384	118621736	79400694	15	53388										
ZNF148	0	genome.wustl.edu	37	chr3	124952376	124952379	+	Frame_Shift_Del	DEL	CTTA	CTTA	-													0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	agtggctgtttcagacttctCttactattaatttttttgag							TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	CTTA	CTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	124952376	124952379	CTTA	-	DEL	ZNF148	ENST00000360647	human	ensembl	69_37n	-1	known	frame_shift_del	c.1194_1191	p.S397fs	1.000:1.000:1.000:0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848	109	0	0	53	11	16.92	-	-	-	-	124952379	CTTA	-	124952376	7	5	614	1	0	1	0	1	0	0	0	0	17830	912	32	0	1194	0	ZNF148	3	124952376	Frame_Shift_Del	DEL	CTTA	TCGA-BH-A209-01A-11D-A17G-09	6330640	124952376	73070054	16	53389										
DLG1	0	genome.wustl.edu	37	chr3	196786826	196786826	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aaagctgtgcaatctgtaatCtctttatggcatttccagac	7	9	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	3	196786826	196786826	C	G	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.2516	p.R839T	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	55	0	0	32	9	21.95	-	-	-	G	196786826	C	G	196786826	3	3	614	1	0	0	0	0	1	0	0	0	4590	913	32	2	276	2	DLG1	3	196786826	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	71834450	196786826	1235604	17	53390										
DRD5	0	genome.wustl.edu	37	chr4	9784798	9784798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cagccacttctgctcccgcaCgccggtggagacggtgaaca	12	15	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	4	9784798	9784798	C	T	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	1	known	missense	c.1145	p.T382M	0.998	prints_Dopa_1B_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	69	0	0	41	7	14.58	-	-	-	T	9784798	C	T	9784798	3	4	614	1	0	0	0	0	1	0	0	0	4795	536	19	1	1147	1	DRD5	4	9784798	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		9784798	181369478	18	53391										
CWH43	0	genome.wustl.edu	37	chr4	49032952	49032952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gtttctatacagactttggtCcaagcacaaggtatcacact	7	10	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	4	49032952	49032952	C	T	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.1483	p.P495S	0.995	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	39	0	0	33	8	19.51	-	-	-	T	49032952	C	T	49032952	3	4	614	1	0	0	0	0	1	0	0	0	4104	855	30	2	1525	2	CWH43	4	49032952	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	39248154	49032952	142121324	19	53392										
LIN54	0	genome.wustl.edu	37	chr4	83857213	83857213	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tatgacgtcgatcagattctCcctcctttcctttccctatc	4	15	2	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	4	83857213	83857213	C	G	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.1766	p.G589A	1.000	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	137	0	0	70	20	22.22	-	-	-	G	83857213	C	G	83857213	3	3	614	1	0	0	0	0	1	0	0	0	8865	855	30	2	495	2	LIN54	4	83857213	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	34824261	83857213	107297063	20	53393										
AFF1	0	genome.wustl.edu	37	chr4	88046286	88046286	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	atcctcccacaaagaatcttCtaaaacaaagtgagtataga	5	9	2	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	4	88046286	88046286	C	G	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	1	known	missense	c.2564	p.S855C	0.990	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	69	0	0	56	11	16.42	-	-	-	G	88046286	C	G	88046286	3	3	614	1	0	0	0	0	1	0	0	0	356	913	32	2	2631	2	AFF1	4	88046286	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	4189073	88046286	103107990	21	53394										
MAML3	0	genome.wustl.edu	37	chr4	140811855	140811855	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	atctcagggagcctaccattCttacttagatcttctagaag	7	10	4	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	4	140811855	140811855	C	G	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.735	p.K245N	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	42	0	0	43	7	14	-	-	-	G	140811855	C	G	140811855	3	3	614	1	0	0	0	0	1	0	0	0	9278	912	32	2	2689	2	MAML3	4	140811855	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	52765569	140811855	50342421	22	53395										
KCNMB1	0	genome.wustl.edu	37	chr5	169805861	169805861	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aataggacgctggtttcgttCccccgaggtgcggagaagca	14	10	0	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	5	169805861	169805861	C	T	SNP	KCNMB1	ENST00000274629	human	ensembl	69_37n	-1	known	silent	c.423	p.G141	0.002	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB1	HGNC	ENSG00000145936	49	0	0	48	10	17.24	-	-	-	T	169805861	C	T	169805861	2	4	614	1	0	0	0	0	0	0	0	1	8128	842	30	2		2	KCNMB1	5	169805861	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		169805861	11109399	23	53396										
SCAND3	0	genome.wustl.edu	37	chr6	28542837	28542837	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tttgtcagcctgatctaattCattttctgtatgcaagctgg	8	8	4	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	6	28542837	28542837	C	G	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.1645	p.E549Q	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	86	0	0	38	9	19.15	-	-	-	G	28542837	C	G	28542837	3	3	614	1	0	0	0	0	1	0	0	0	13963	835	29	2	2340	2	SCAND3	6	28542837	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		28542837	142572230	24	53397										
GOPC	0	genome.wustl.edu	37	chr6	117892082	117892082	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gaggagaacttttctaattgGaccaacaccttggcttttct	8	9	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	6	117892082	117892082	G	T	SNP	GOPC	ENST00000368498	human	ensembl	69_37n	-1	known	missense	c.853	p.P285T	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932	101	0	0	57	11	16.18	-	-	-	T	117892082	G	T	117892082	3	4	614	1	0	0	0	0	1	0	0	0	6622	1174	41	2	551	2	GOPC	6	117892082	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	89349245	117892082	53222985	25	53398										
T	0	genome.wustl.edu	37	chr6	166571842	166571842	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	acaggtgtccatgaggctatGaggcggccttgggctgcggc	17	10	0	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	6	166571842	166571842	G	C	SNP	T	ENST00000296946	human	ensembl	69_37n	-1	known	silent	c.1269	p.L423	0.975	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_Brachyury,prints_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458	54	0	0	33	9	21.43	-	-	-	C	166571842	G	C	166571842	2	2	614	1	0	0	0	0	0	0	0	1	15580	1277	45	2		2	T	6	166571842	Silent	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	48679760	166571842	4543225	26	53399										
GLCCI1	0	genome.wustl.edu	37	chr7	8099783	8099784	+	Frame_Shift_Del	DEL	TC	TC	-													0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	atatatcagtgccaaaatcaTctgtttcgcgtgtgccctgc							TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	7	8099783	8099784	TC	-	DEL	GLCCI1	ENST00000223145	human	ensembl	69_37n	1	known	frame_shift_del	c.871_872	p.S291fs	0.997:1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	70	0	0	69	8	10.26	-	-	-	-	8099784	TC	-	8099783	7	5	614	1	0	1	0	1	0	0	0	0	6483	1435	50	0	889	0	GLCCI1	7	8099783	Frame_Shift_Del	DEL	TC	TCGA-BH-A209-01A-11D-A17G-09		8099783	151038880	27	53400										
DNAH11	0	genome.wustl.edu	37	chr7	21750285	21750285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ggcgatattgaccccatgtgGattgaatcactgaatactgt	10	8	1	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	7	21750285	21750285	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.6819	p.W2273C	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	68	0	0	42	11	20.75	-	-	-	T	21750285	G	T	21750285	3	4	614	1	0	0	0	0	1	0	0	0	4635	1183	41	2	6982	2	DNAH11	7	21750285	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	13650502	21750285	137388378	28	53401										
COBL	0	genome.wustl.edu	37	chr7	51096585	51096585	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tgaggactcaccaagttcccCagctcgtcaatcttaatggc	8	13	3	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	7	51096585	51096585	C	T	SNP	COBL	ENST00000395542	human	ensembl	69_37n	-1	known	silent	c.2454	p.L818	0.140	NULL	pfam_Cordon-bleu_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	23	0	0	24	8	25	-	-	-	T	51096585	C	T	51096585	2	4	614	1	0	0	0	0	0	0	0	1	3683	581	21	4		4	COBL	7	51096585	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	29346300	51096585	108042078	29	53402										
TAS2R3	0	genome.wustl.edu	37	chr7	141463992	141463992	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ccgagggggtgttcctgattCtgtctggcactcagttcaca	12	11	4	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	7	141463992	141463992	C	T	SNP	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	silent	c.34	p.L12	0.003	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	110	0	0	51	20	28.17	-	-	-	T	141463992	C	T	141463992	2	4	614	1	0	0	0	0	0	0	0	1	15664	912	32	2		2	TAS2R3	7	141463992	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	90367407	141463992	17674671	30	53403										
TRAPPC9	0	genome.wustl.edu	37	chr8	141415752	141415752	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ggcagttcttagcacgtccgAtctcagtactggtgtcaggg	13	10	3	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	8	141415752	141415752	A	T	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.1226	p.I409N	0.987	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	91	0	0	86	20	18.69	-	-	-	T	141415752	A	T	141415752	3	4	614	1	0	0	0	0	1	0	0	0	16561	333	12	5	2586	5	TRAPPC9	8	141415752	Missense_Mutation	SNP	A	TCGA-BH-A209-01A-11D-A17G-09		141415752	4948270	31	53404										
ZCCHC6	0	genome.wustl.edu	37	chr9	88967818	88967818	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tgttcatcagacagccatctCttactctgatctttgtggct	7	11	5	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	9	88967818	88967818	C	G	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.297	p.K99N	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	124	0	0	91	15	14.15	-	-	-	G	88967818	C	G	88967818	3	3	614	1	0	0	0	0	1	0	0	0	17688	912	32	2	4294	2	ZCCHC6	9	88967818	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		88967818	52245613	32	53405										
ZNF367	0	genome.wustl.edu	37	chr9	99160571	99160571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aatcgcggacagtatctgctCtgggcctaccacgtcggatt	11	12	2	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	9	99160571	99160571	C	T	SNP	ZNF367	ENST00000375256	human	ensembl	69_37n	-1	known	missense	c.446	p.R149K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF367	HGNC	ENSG00000165244	72	0	0	79	15	15.96	-	-	-	T	99160571	C	T	99160571	3	4	614	1	0	0	0	0	1	0	0	0	17967	913	32	2	622	2	ZNF367	9	99160571	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	10192753	99160571	42052860	33	53406										
TRUB2	0	genome.wustl.edu	37	chr9	131073254	131073254	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	atgggccggatcaggcctctCacggccatctcataggcctc	11	15	3	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	9	131073254	131073254	C	A	SNP	TRUB2	ENST00000372890	human	ensembl	69_37n	-1	known	silent	c.582	p.V194	0.225	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom	-	no_errors	TRUB2	HGNC	ENSG00000167112	48	0	0	37	7	15.91	-	-	-	A	131073254	C	A	131073254	2	1	614	1	0	0	0	0	0	0	0	1	16699	813	29	2		2	TRUB2	9	131073254	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	31912683	131073254	10140177	34	53407										
RAPGEF1	0	genome.wustl.edu	37	chr9	134504605	134504605	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ccagtcgtcttgtttaggatCtctacctcgcggtctgtcag	10	12	4	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	9	134504605	134504605	C	G	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	missense	c.780	p.E260D	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	78	0	0	61	9	12.86	-	-	-	G	134504605	C	G	134504605	3	3	614	1	0	0	0	0	1	0	0	0	13126	912	32	2	2579	2	RAPGEF1	9	134504605	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	3431351	134504605	6708826	35	53408										
GDF2	0	genome.wustl.edu	37	chr10	48413859	48413859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gctgtcccagccgatgtcctCgaagtttacccgcagggagg	13	13	0	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	10	48413859	48413859	C	T	SNP	GDF2	ENST00000249598	human	ensembl	69_37n	-1	known	missense	c.1009	p.E337K	0.993	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	42	0	0	28	6	17.65	-	-	-	T	48413859	C	T	48413859	3	4	614	1	0	0	0	0	1	0	0	0	6366	893	31	1	284	1	GDF2	10	48413859	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		48413859	87120888	36	53409										
OR51S1	0	genome.wustl.edu	37	chr11	4869758	4869758	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ccttgcaacaccttgccaatCaggccataggagaagaaaat	8	11	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	4869758	4869758	C	T	SNP	OR51S1	ENST00000322101	human	ensembl	69_37n	-1	known	silent	c.681	p.L227	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922	42	0	0	19	4	17.39	-	-	-	T	4869758	C	T	4869758	2	4	614	1	0	0	0	0	0	0	0	1	11178	813	29	2		2	OR51S1	11	4869758	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		4869758	130136758	37	53410										
FAM111A	0	genome.wustl.edu	37	chr11	58920087	58920087	+	Frame_Shift_Del	DEL	A	A	-													0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aaatcattgaaaacttcaagAaaaaaatgaaagtaaaaaat							TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	58920087	58920087	A	-	DEL	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	frame_shift_del	c.946	p.M318fs	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	19	0	0	18	2	10	-	-	-	-	58920087	A	-	58920087	7	5	614	1	0	1	0	1	0	0	0	0	5439	247	9	0	952	0	FAM111A	11	58920087	Frame_Shift_Del	DEL	A	TCGA-BH-A209-01A-11D-A17G-09	54050329	58920087	76086429	38	53411										
MS4A1	0	genome.wustl.edu	37	chr11	60229921	60229921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	aggccctattgctatgcaatCtggtccaaaaccactcttca	6	13	3	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	60229921	60229921	C	G	SNP	MS4A1	ENST00000345732	human	ensembl	69_37n	1	known	missense	c.74	p.S25C	0.044	NULL	pfam_CD20-like	-	no_errors	MS4A1	HGNC	ENSG00000156738	46	0	0	46	9	15.79	-	-	-	G	60229921	C	G	60229921	3	3	614	1	0	0	0	0	1	0	0	0	9926	913	32	2	76	2	MS4A1	11	60229921	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	1309834	60229921	74776595	39	53412										
AHNAK	0	genome.wustl.edu	37	chr11	62294670	62294670	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cccttccaatttgggaacatCtacatccacctctccttttg	4	15	2	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	62294670	62294670	C	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.7219	p.D2407H	0.014	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	28	0	0	38	6	13.64	-	-	-	G	62294670	C	G	62294670	3	3	614	1	0	0	0	0	1	0	0	0	414	913	32	2	10573	2	AHNAK	11	62294670	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	2064749	62294670	72711846	40	53413										
SUV420H1	0	genome.wustl.edu	37	chr11	67925331	67925331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gccctcagaagaggaggaatCatctgtactttcttcctcat	8	11	5	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	67925331	67925331	C	T	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.2482	p.D828N	0.958	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	79	0	0	43	19	30.65	-	-	-	T	67925331	C	T	67925331	3	4	614	1	0	0	0	0	1	0	0	0	15505	826	29	2	179	2	SUV420H1	11	67925331	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	5630661	67925331	67081185	41	53414										
TRIM29	0	genome.wustl.edu	37	chr11	119998060	119998060	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ttacctgcagaaacaacacaGagtcgctgatgctatgcagc	9	11	0	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	11	119998060	119998060	G	A	SNP	TRIM29	ENST00000341846	human	ensembl	69_37n	-1	known	missense	c.1118	p.S373F	0.996	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699	41	0	0	24	14	36.84	-	-	-	A	119998060	G	A	119998060	3	1	614	1	0	0	0	0	1	0	0	0	16599	942	33	2	676	2	TRIM29	11	119998060	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	52072729	119998060	15008456	42	53415										
COL2A1	0	genome.wustl.edu	37	chr12	48374414	48374414	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ctggccggcctctccttgctCacccttggccccaggctggc	11	19	2	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	12	48374414	48374414	C	G	SNP	COL2A1	ENST00000380518	human	ensembl	69_37n	-1	known	missense	c.2548	p.E850Q	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	25	0	0	12	4	25	-	-	-	G	48374414	C	G	48374414	3	3	614	1	0	0	0	0	1	0	0	0	3717	835	29	2	1979	2	COL2A1	12	48374414	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		48374414	85477481	43	53416										
TRAFD1	0	genome.wustl.edu	37	chr12	112583428	112583428	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tgttgccttgtgaattttgtGaggagctctacccagaggaa	12	7	1	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	12	112583428	112583428	G	A	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.889	p.E297K	1.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	150	0	0	127	21	14.19	-	-	-	A	112583428	G	A	112583428	3	1	614	1	0	0	0	0	1	0	0	0	16543	1291	45	2	911	2	TRAFD1	12	112583428	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	64209014	112583428	21268467	44	53417										
N4BP2L2	0	genome.wustl.edu	37	chr13	33092110	33092110	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cgatccaacatctgagcaatCttctttcgagacacaccatg	6	13	3	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	13	33092110	33092110	C	G	SNP	N4BP2L2	ENST00000399396	human	ensembl	69_37n	-1	known	missense	c.294	p.K98N	1.000	NULL	NULL	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	90	0	0	92	12	11.54	-	-	-	G	33092110	C	G	33092110	3	3	614	1	0	0	0	0	1	0	0	0	10184	912	32	2	2035	2	N4BP2L2	13	33092110	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		33092110	82077768	45	53418										
EDDM3A	0	genome.wustl.edu	37	chr14	21215831	21215831	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cagtaacaacatttactggaGagaattcataaaacttcatt	5	7	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	14	21215831	21215831	G	A	SNP	EDDM3A	ENST00000326842	human	ensembl	69_37n	1	known	missense	c.92	p.R31K	0.018	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562	47	0	0	37	7	15.91	-	-	-	A	21215831	G	A	21215831	3	1	614	1	0	0	0	0	1	0	0	0	4944	942	33	2	94	2	EDDM3A	14	21215831	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09		21215831	86133709	46	53419										
TRIM9	0	genome.wustl.edu	37	chr14	51560947	51560947	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cattgcacgcagtacatgctGtggttctccagctcgtggtc	11	12	1	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	14	51560947	51560947	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	69_37n	-1	known	silent	c.711	p.H237	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	47	0	0	27	5	15.62	-	-	-	A	51560947	G	A	51560947	2	1	614	1	0	0	0	0	0	0	0	1	16645	1368	48	4		4	TRIM9	14	51560947	Silent	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	30345116	51560947	55788593	47	53420										
CHRFAM7A	0	genome.wustl.edu	37	chr15	30659709	30659709	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ccgagaggcccacgatgatcAtggtgctggcgaagtactgg	15	10	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	15	30659709	30659709	A	G	SNP	CHRFAM7A	ENST00000299847	human	ensembl	69_37n	-1	known	missense	c.632	p.M211T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664	65	0	0	24	5	17.24	-	-	-	G	30659709	A	G	30659709	3	3	614	1	0	0	0	0	1	0	0	0	3404	217	8	5	614	5	CHRFAM7A	15	30659709	Missense_Mutation	SNP	A	TCGA-BH-A209-01A-11D-A17G-09		30659709	71871683	48	53421										
RYR3	0	genome.wustl.edu	37	chr15	33833010	33833010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	agcatctctcagtatcaaatGgtaacatacaagtggatgcc	8	9	3	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	15	33833010	33833010	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.565	p.G189S	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	47	0	0	39	9	18.75	-	-	-	A	33833010	G	A	33833010	3	1	614	1	0	0	0	0	1	0	0	0	13856	1348	47	4	591	4	RYR3	15	33833010	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	3173301	33833010	68698382	49	53422										
UNC13C	0	genome.wustl.edu	37	chr15	54306457	54306457	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ggcagtcacctgatgacagtGatgaagatcttgaatctgac	11	8	3	7			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	15	54306457	54306457	G	C	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.1357	p.D453H	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	32	0	0	26	6	18.75	-	-	-	C	54306457	G	C	54306457	3	2	614	1	0	0	0	0	1	0	0	0	17083	1290	45	2	1359	2	UNC13C	15	54306457	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	20473447	54306457	48224935	50	53423										
POLG	0	genome.wustl.edu	37	chr15	89872184	89872184	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gtgctctcaccgctgggcctCttctggctttcctctgggac	11	15	4	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	15	89872184	89872184	C	T	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.1013	p.R338K	0.001	pirsf_DNA-dir_DNA_pol_A_mt_sub,superfamily_RNaseH-like_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	71	0	0	25	5	16.67	-	-	-	T	89872184	C	T	89872184	3	4	614	1	0	0	0	0	1	0	0	0	12274	913	32	2	2786	2	POLG	15	89872184	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	35565727	89872184	12659208	51	53424										
MCTP2	0	genome.wustl.edu	37	chr15	94927324	94927324	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cataccgtctacaaaaacctCaaccctgaatggaacaaagt	5	12	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	15	94927324	94927324	C	A	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	silent	c.1656	p.L552	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	59	0	0	27	7	20.59	-	-	-	A	94927324	C	A	94927324	2	1	614	1	0	0	0	0	0	0	0	1	9472	813	29	2		2	MCTP2	15	94927324	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	5055140	94927324	7604068	52	53425										
CLCN7	0	genome.wustl.edu	37	chr16	1500621	1500621	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	taggtccagcaggccaggaaGaagtagaccagcgtgaacag	14	9	0	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	1500621	1500621	G	A	SNP	CLCN7	ENST00000382745	human	ensembl	69_37n	-1	known	silent	c.1494	p.F498	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	19	0	0	17	5	22.73	-	-	-	A	1500621	G	A	1500621	2	1	614	1	0	0	0	0	0	0	0	1	3498	933	33	2		2	CLCN7	16	1500621	Silent	SNP	G	TCGA-BH-A209-01A-11D-A17G-09		1500621	88854132	53	53426										
ERN2	0	genome.wustl.edu	37	chr16	23722312	23722312	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	atccaaggtggacaccagcaGgaggttctctggcctgagag	14	10	1	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	23722312	23722312	G	A	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	silent	c.265	p.L89	1.000	superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	48	0	0	19	9	32.14	-	-	-	A	23722312	G	A	23722312	2	1	614	1	0	0	0	0	0	0	0	1	5275	991	35	4		4	ERN2	16	23722312	Silent	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	22221691	23722312	66632441	54	53427										
RBBP6	0	genome.wustl.edu	37	chr16	24578496	24578496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tgggcgacaccacagcgaaaGatcacagaggactcaaggcc	12	12	2	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	24578496	24578496	G	C	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.1622	p.R541T	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	73	0	0	42	22	34.38	-	-	-	C	24578496	G	C	24578496	3	2	614	1	0	0	0	0	1	0	0	0	13186	942	33	2	1734	2	RBBP6	16	24578496	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	856184	24578496	65776257	55	53428										
NUP93	0	genome.wustl.edu	37	chr16	56782199	56782199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gtgagctccttcagcaagctGaacagcttgctgctgagact	11	11	1	3			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	56782199	56782199	G	A	SNP	NUP93	ENST00000308159	human	ensembl	69_37n	1	known	missense	c.40	p.E14K	1.000	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900	30	0	0	21	4	16	-	-	-	A	56782199	G	A	56782199	3	1	614	1	0	0	0	0	1	0	0	0	10845	1291	45	2	42	2	NUP93	16	56782199	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	32203703	56782199	33572554	56	53429										
CDH1	0	genome.wustl.edu	37	chr16	68835596	68835596	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	attttgaagattgcaccggtCgacaaaggacagcctatttt	9	8	0	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	68835596	68835596	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.187	p.R63*	0.175	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	98	0	0	44	15	25.42	-	-	-	T	68835596	C	T	68835596	4	4	614	1	0	0	0	0	0	1	0	0	3124	876	31	1	197	1	CDH1	16	68835596	Nonsense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	12053397	68835596	21519157	57	53430										
VAC14	0	genome.wustl.edu	37	chr16	70796903	70796903	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ctgcacgatcccgtcgaggtGaagggtcactggggctcttt	14	11	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	70796903	70796903	G	T	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.1186	p.H396N	0.999	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	32	0	0	24	4	14.29	-	-	-	T	70796903	G	T	70796903	3	4	614	1	0	0	0	0	1	0	0	0	17208	1290	45	2	1198	2	VAC14	16	70796903	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	1961307	70796903	19557850	58	53431										
C16orf55	0	genome.wustl.edu	37	chr16	89724783	89724783	+	Frame_Shift_Del	DEL	G	G	-													0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cctgtggacagcctccacccGggggccgggacagccaagca							TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	16	89724783	89724783	G	-	DEL	C16orf55	ENST00000579310	human	ensembl	69_37n	1	known	frame_shift_del	c.165	p.A57fs	0.001	NULL	NULL	-	no_errors	C16orf55	HGNC	ENSG00000167523	20	0	0	11	2	15.38	-	-	-	-	89724783	G	-	89724783	7	5	614	1	0	1	0	1	0	0	0	0	1833	1103	39	0	168	0	C16orf55	16	89724783	Frame_Shift_Del	DEL	G	TCGA-BH-A209-01A-11D-A17G-09	18927880	89724783	629970	59	53432										
NT5M	0	genome.wustl.edu	37	chr17	17248229	17248229	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gccggacatcacaggcaagtGgcctgcgacaggtgaggagc	16	11	1	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	17	17248229	17248229	G	A	SNP	NT5M	ENST00000582909	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.937	-	-	-	no_errors	NT5M	HGNC	ENSG00000205309	45	0	0	21	12	36.36	-	-	-	A	17248229	G	A	17248229	1	1	614	0	1	0	0	0	0	0	0	0	10767	1363	47	4		4	NT5M	17	17248229	RNA	SNP	G	TCGA-BH-A209-01A-11D-A17G-09		17248229	63946981	60	53433										
SLC4A1	0	genome.wustl.edu	37	chr17	42330736	42330736	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	cgctcaggtttgctgacaatCagcctacggtaggggaaggt	14	9	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	17	42330736	42330736	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	silent	c.2061	p.L687	0.998	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	17	0	0	16	5	23.81	-	-	-	T	42330736	C	T	42330736	2	4	614	1	0	0	0	0	0	0	0	1	14739	813	29	2		2	SLC4A1	17	42330736	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	25082507	42330736	38864474	61	53434										
SPAG9	0	genome.wustl.edu	37	chr17	49083456	49083456	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	taaaacttacttcctaagctCttcctccaattctctgttct	2	13	3	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	17	49083456	49083456	C	G	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.1414	p.E472Q	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	141	0	0	72	15	17.24	-	-	-	G	49083456	C	G	49083456	3	3	614	1	0	0	0	0	1	0	0	0	15076	922	32	2	2631	2	SPAG9	17	49083456	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	6752720	49083456	32111754	62	53435										
SPAG9	0	genome.wustl.edu	37	chr17	49083547	49083547	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	agcacatctttctcacaggtCagttcatccacttttgctat	5	12	4	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	17	49083547	49083547	C	G	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	silent	c.1323	p.L441	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	140	0	0	98	15	13.27	-	-	-	G	49083547	C	G	49083547	2	3	614	1	0	0	0	0	0	0	0	1	15076	813	29	2		2	SPAG9	17	49083547	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	91	49083547	32111663	63	53436										
RAD51C	0	genome.wustl.edu	37	chr17	56770065	56770065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tggtgagtttcccgctgtctCcagcggtgcgggtgaagctg	16	10	1	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	17	56770065	56770065	C	T	SNP	RAD51C	ENST00000337432	human	ensembl	69_37n	1	known	missense	c.61	p.P21S	0.870	superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	RAD51C	HGNC	ENSG00000108384	59	0	0	37	9	19.57	-	-	-	T	56770065	C	T	56770065	3	4	614	1	0	0	0	0	1	0	0	0	13071	855	30	2	63	2	RAD51C	17	56770065	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	7686518	56770065	24425145	64	53437										
MUC16	0	genome.wustl.edu	37	chr19	9086173	9086173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tagacagggacttagaagagGtatcagagccgttttccaat	11	7	1	4			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	19	9086173	9086173	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.5642	p.T1881I	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	45	0	0	57	18	24	-	-	-	A	9086173	G	A	9086173	3	1	614	1	0	0	0	0	1	0	0	0	10045	1261	44	4	38217	4	MUC16	19	9086173	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09		9086173	50042810	65	53438										
GART	0	genome.wustl.edu	37	chr21	34876575	34876575	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gcgacagtatcacccctcttCacgggaacagcttcttgcaa	8	14	4	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	21	34876575	34876575	C	T	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	silent	c.2889	p.V963	0.647	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,tigrfam_PurN_trans	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	79	0	0	43	7	14	-	-	-	T	34876575	C	T	34876575	2	4	614	1	0	0	0	0	0	0	0	1	6293	813	29	2		2	GART	21	34876575	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		34876575	13253320	66	53439										
BCR	0	genome.wustl.edu	37	chr22	23627293	23627293	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tccagatggtggatgaactgGaggcagtgcccaacatcccc	12	12	0	2			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	22	23627293	23627293	G	C	SNP	BCR	ENST00000305877	human	ensembl	69_37n	1	known	missense	c.2311	p.E771Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	71	0	0	32	21	39.62	-	-	-	C	23627293	G	C	23627293	3	2	614	1	0	0	0	0	1	0	0	0	1392	1175	41	2	2349	2	BCR	22	23627293	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09		23627293	27677273	67	53440										
ADORA2A	0	genome.wustl.edu	37	chr22	24829519	24829519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	tactttgtggtgtcactggcGgcggccgacatcgcagtggg	16	10	1	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	22	24829519	24829519	G	A	SNP	ADORA2A	ENST00000337539	human	ensembl	69_37n	1	known	silent	c.147	p.A49	0.708	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271	36	0	0	31	9	22.5	-	-	-	A	24829519	G	A	24829519	2	1	614	1	0	0	0	0	0	0	0	1	327	1103	39	1		1	ADORA2A	22	24829519	Silent	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	1202226	24829519	26475047	68	53441										
GK	0	genome.wustl.edu	37	chrX	30671665	30671665	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	agctggtttcatggcagcctCaaagaaggcagttttggggc	14	8	2	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	X	30671665	30671665	C	T	SNP	GK	ENST00000378943	human	ensembl	69_37n	1	known	missense	c.11	p.S4L	0.873	NULL	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814	31	0	0	14	6	30	-	-	-	T	30671665	C	T	30671665	3	4	614	1	0	0	0	0	1	0	0	0	6472	838	29	2	13	2	GK	23	30671665	Missense_Mutation	SNP	C	TCGA-BH-A209-01A-11D-A17G-09		30671665	124598895	69	53442										
SLC38A5	0	genome.wustl.edu	37	chrX	48326103	48326103	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	gtggggccactcacatccatGaactggaccggcttgctccc	11	15	1	1			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	X	48326103	48326103	G	C	SNP	SLC38A5	ENST00000317669	human	ensembl	69_37n	-1	known	missense	c.123	p.F41L	0.063	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483	38	0	0	22	11	33.33	-	-	-	C	48326103	G	C	48326103	3	2	614	1	0	0	0	0	1	0	0	0	14696	1281	45	2	1351	2	SLC38A5	23	48326103	Missense_Mutation	SNP	G	TCGA-BH-A209-01A-11D-A17G-09	17654438	48326103	106944457	70	53443										
CACNA1F	0	genome.wustl.edu	37	chrX	49062124	49062124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.507042253521127	36	7.04369503942835e-14	4.05213969503197	5.83262531860663	2.93297730307076	0.500480863314603	1	27	ctcttcccatggctggggtcCgagtgggttccaggcacgtg	15	12	1	0			TCGA-BH-A209-01A-11D-A17G-09	TCGA-BH-A209-11A-42D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4eaf8116-4733-4865-8e22-5d03887bbc9b	68d5b797-ff7c-41ab-aedf-8a816ed290e2	X	49062124	49062124	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.5655	p.S1885	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	31	0	0	25	12	32.43	-	-	-	T	49062124	C	T	49062124	2	4	614	1	0	0	0	0	0	0	0	1	2568	639	23	1		1	CACNA1F	23	49062124	Silent	SNP	C	TCGA-BH-A209-01A-11D-A17G-09	736021	49062124	106208436	71	53444										
GUCA2B	0	genome.wustl.edu	37	chr1	42620392	42620392	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	ctggaatccatgaagaagctGagtgacctggaggcacagtg	14	8	0	4			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	1	42620392	42620392	G	C	SNP	GUCA2B	ENST00000372581	human	ensembl	69_37n	1	known	silent	c.132	p.L44	0.645	pfam_Guanylin,superfamily_Guanylin,pirsf_Guanylin,prints_Guanylin	pfam_Guanylin,superfamily_Guanylin,pirsf_Guanylin,prints_Guanylin	-	no_errors	GUCA2B	HGNC	ENSG00000044012	44	0	0	33	6	15.38	-	-	-	C	42620392	G	C	42620392	2	2	615	1	0	0	0	0	0	0	0	1	6943	1277	45	2		2	GUCA2B	1	42620392	Silent	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		42620392	206630229	1	53445										
PAPPA2	0	genome.wustl.edu	37	chr1	176526299	176526299	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	tgcgtccagaagtgctggctGagattccccgggaggcgttc	15	11	0	2			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	1	176526299	176526299	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.841	p.E281K	1.000	superfamily_ConA-like_lec_gl	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	76	0	0	32	4	11.11	-	-	-	A	176526299	G	A	176526299	3	1	615	1	0	0	0	0	1	0	0	0	11506	1291	45	2	843	2	PAPPA2	1	176526299	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	133905907	176526299	72724322	2	53446										
DDX59	0	genome.wustl.edu	37	chr1	200635368	200635368	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	ataaaggggtgctctttgtaGacataggaagcattcagtgg	13	5	2	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	1	200635368	200635368	G	A	SNP	DDX59	ENST00000331314	human	ensembl	69_37n	-1	known	silent	c.501	p.V167	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197	42	0	0	33	4	10.81	-	-	-	A	200635368	G	A	200635368	2	1	615	1	0	0	0	0	0	0	0	1	4407	929	33	2		2	DDX59	1	200635368	Silent	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	24109069	200635368	48615253	3	53447										
TARBP1	0	genome.wustl.edu	37	chr1	234528373	234528373	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	agtaaattagagttaaaaaaCgtattaacctaaacttaact	4	5	0	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	1	234528373	234528373	C	T	SNP	TARBP1	ENST00000471918	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TARBP1	HGNC	ENSG00000059588	21	0	0	19	6	24	-	-	-	T	234528373	C	T	234528373	1	4	615	0	1	0	0	0	0	0	0	0	15647	551	19	1		1	TARBP1	1	234528373	RNA	SNP	C	TCGA-BH-A28O-01A-11D-A228-09	33893005	234528373	14722248	4	53448										
TTN	0	genome.wustl.edu	37	chr2	179483102	179483102	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	tctcttaatgtcacgtctttCaacaacgtaacctatgattt	4	10	4	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	2	179483102	179483102	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.39379	p.E13127Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	76	0	0	32	4	11.11	-	-	-	G	179483102	C	G	179483102	3	3	615	1	0	0	0	0	1	0	0	0	16832	835	29	2	61054	2	TTN	2	179483102	Missense_Mutation	SNP	C	TCGA-BH-A28O-01A-11D-A228-09		179483102	63716271	5	53449										
PIKFYVE	0	genome.wustl.edu	37	chr2	209215532	209215532	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	gccaagttttactgtcggctCtactatgcgggagagtttca	11	9	2	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	2	209215532	209215532	C	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	silent	c.5472	p.L1824	0.867	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	58	0	0	46	7	13.21	-	-	-	A	209215532	C	A	209215532	2	1	615	1	0	0	0	0	0	0	0	1	11998	900	32	2		2	PIKFYVE	2	209215532	Silent	SNP	C	TCGA-BH-A28O-01A-11D-A228-09	29732430	209215532	33983841	6	53450										
CCR8	0	genome.wustl.edu	37	chr3	39374594	39374594	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	gggtcccattcaacgtggttCttttcctcacttccttgcac	7	14	3	0			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	3	39374594	39374594	C	G	SNP	CCR8	ENST00000326306	human	ensembl	69_37n	1	known	missense	c.772	p.L258V	0.269	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR8,prints_Chemokine_CXCR4,prints_Brdyknn_rcpt	-	no_errors	CCR8	HGNC	ENSG00000179934	117	0	0	65	8	10.81	-	-	-	G	39374594	C	G	39374594	3	3	615	1	0	0	0	0	1	0	0	0	2976	913	32	2	774	2	CCR8	3	39374594	Missense_Mutation	SNP	C	TCGA-BH-A28O-01A-11D-A228-09		39374594	158647836	7	53451										
RTP2	0	genome.wustl.edu	37	chr3	187416513	187416513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	ggcctcacagaactctgcacGatgcggcccgctgtccgggc	13	16	2	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	3	187416513	187416513	G	A	SNP	RTP2	ENST00000358241	human	ensembl	69_37n	-1	known	missense	c.451	p.R151C	0.844	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471	54	0	0	30	5	14.29	-	-	-	A	187416513	G	A	187416513	3	1	615	1	0	0	0	0	1	0	0	0	13820	1058	37	1	230	1	RTP2	3	187416513	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	148041919	187416513	10605917	8	53452										
SEC24B	0	genome.wustl.edu	37	chr4	110427524	110427524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	gctatcctccagtataggagGattgagtcttcagagttctc	10	9	3	2			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	4	110427524	110427524	G	A	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	missense	c.1529	p.G510E	0.996	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	26	0	0	29	4	12.12	-	-	-	A	110427524	G	A	110427524	3	1	615	1	0	0	0	0	1	0	0	0	14083	1174	41	2	1555	2	SEC24B	4	110427524	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		110427524	80726752	9	53453										
UBR2	0	genome.wustl.edu	37	chr6	42612060	42612060	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	atggaaaaagatttagttctGagattacccataaggtaaga	9	4	1	3			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	6	42612060	42612060	G	A	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.2206	p.E736K	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	64	0	0	34	4	10.53	-	-	-	A	42612060	G	A	42612060	3	1	615	1	0	0	0	0	1	0	0	0	16999	1291	45	2	2426	2	UBR2	6	42612060	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		42612060	128503007	10	53454										
GRM1	0	genome.wustl.edu	37	chr6	146673426	146673426	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	aactatgtccaggacagtaaGatggggtttgtcatcaatgc	11	7	2	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	6	146673426	146673426	G	C	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.1227	p.K409N	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	73	0	0	33	4	10.81	-	-	-	C	146673426	G	C	146673426	3	2	615	1	0	0	0	0	1	0	0	0	6847	933	33	2	1241	2	GRM1	6	146673426	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	104061366	146673426	24441641	11	53455										
HIPK2	0	genome.wustl.edu	37	chr7	139258080	139258080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	cggagcctgggccatggtggGagtgatgtaggcctgctgcc	18	10	0	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	7	139258080	139258080	G	T	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.3190	p.P1064T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	37	0	0	27	4	12.9	-	-	-	T	139258080	G	T	139258080	3	4	615	1	0	0	0	0	1	0	0	0	7168	1174	41	2	410	2	HIPK2	7	139258080	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		139258080	19880583	12	53456										
LRRK2	0	genome.wustl.edu	37	chr12	40758829	40758829	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	caacttttgtaattcggtcaGagtcatgatgacagcacagc	9	9	2	3			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	12	40758829	40758829	G	C	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.7367	p.R2456T	0.995	superfamily_WD40_repeat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	81	0	0	48	7	12.73	-	-	-	C	40758829	G	C	40758829	3	2	615	1	0	0	0	0	1	0	0	0	9099	942	33	2	7561	2	LRRK2	12	40758829	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		40758829	93093066	13	53457										
MAPK6	0	genome.wustl.edu	37	chr15	52357189	52357189	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	acagcagcattctgaaacatCtgaactaaaacactcagcag	6	11	3	2			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	15	52357189	52357189	C	G	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.2158	p.L720V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	34	0	0	28	4	12.5	-	-	-	G	52357189	C	G	52357189	3	3	615	1	0	0	0	0	1	0	0	0	9352	912	32	2	2176	2	MAPK6	15	52357189	Missense_Mutation	SNP	C	TCGA-BH-A28O-01A-11D-A228-09		52357189	50174203	14	53458										
HSD3B7	0	genome.wustl.edu	37	chr16	30997267	30997267	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	tctgtccacatggatgggtcGagtgagtcacattgggaacg	14	8	2	1			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	16	30997267	30997267	G	C	SNP	HSD3B7	ENST00000562932	human	ensembl	69_37n	1	novel	silent	c.288	p.S96	0.007	pfam_Epimerase_deHydtase,pfam_PKS_KR,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_Polysac_CapD-like,pfam_PKS_KR,pfam_dTDP_dehydrorham_reduct	-	no_stop_codon	HSD3B7	HGNC	ENSG00000099377	49	0	0	30	4	11.76	-	-	-	C	30997267	G	C	30997267	2	2	615	1	0	0	0	0	0	0	0	1	7443	1073	37	3		3	HSD3B7	16	30997267	Silent	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		30997267	59357486	15	53459										
ITGAX	0	genome.wustl.edu	37	chr16	31366564	31366564	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	gagctcagagctccacatctGaccttctagtcatgaccagg	9	13	4	3			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	16	31366564	31366564	G	A	SNP	ITGAX	ENST00000562918	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ITGAX	HGNC	ENSG00000140678	71	0	0	33	6	15.38	-	-	-	A	31366564	G	A	31366564	1	1	615	0	1	0	0	0	0	0	0	0	7943	1305	45	2		2	ITGAX	16	31366564	RNA	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	369297	31366564	58988189	16	53460										
NWD1	0	genome.wustl.edu	37	chr19	16842052	16842052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	agcactgcctaccctgaagtGccagaccttctgccagaggc	10	15	1	3			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	19	16842052	16842052	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.44	p.C15F	0.578	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	29	0	0	19	5	20.83	-	-	-	T	16842052	G	T	16842052	3	4	615	1	0	0	0	0	1	0	0	0	10854	1334	46	4		4	NWD1	19	16842052	Missense_Mutation	SNP	G	TCGA-BH-A28O-01A-11D-A228-09		16842052	42286931	17	53461										
LILRB3	0	genome.wustl.edu	37	chr19	54725995	54725995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.555555555555556	10	0.000416167647638087	3.85185185185185	4.95238095238095	2.88888888888889	0.66992140985949	1	7	gctgagagggtgggtttgctGtaggctcctaggagagaaag	18	5	0	2			TCGA-BH-A28O-01A-11D-A228-09	TCGA-BH-A28O-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	671a3899-2c82-49eb-b26f-b22f94292694	6b7bf36b-da79-40b8-a79c-ea31e3bb84c0	19	54725995	54725995	G	A	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	silent	c.363	p.Y121	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	21	0	0	18	9	33.33	-	-	-	A	54725995	G	A	54725995	2	1	615	1	0	0	0	0	0	0	0	1	8847	1372	48	4		4	LILRB3	19	54725995	Silent	SNP	G	TCGA-BH-A28O-01A-11D-A228-09	37883943	54725995	4402988	18	53462										
CREB3L4	0	genome.wustl.edu	37	chr1	153941846	153941846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	atttatggtgcctgattcctGcatggtcagtgagctgccct	11	10	1	2			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	153941846	153941846	G	A	SNP	CREB3L4	ENST00000271889	human	ensembl	69_37n	1	known	missense	c.458	p.C153Y	0.957	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L4	HGNC	ENSG00000143578	52	0	0	50	35	41.18	-	-	-	A	153941846	G	A	153941846	3	1	616	1	0	0	0	0	1	0	0	0	3889	1319	46	4	468	4	CREB3L4	1	153941846	Missense_Mutation	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		153941846	95308775	1	53463										
USH2A	0	genome.wustl.edu	37	chr1	216172264	216172264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	atatttattaccaggtaaaaCgtattgtagcatatgatcct	6	6	0	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	216172264	216172264	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.6622	p.V2208I	0.392	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	112	0	0	78	32	28.83	-	-	-	T	216172264	C	T	216172264	3	4	616	1	0	0	0	0	1	0	0	0	17133	536	19	1	9142	1	USH2A	1	216172264	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	62230418	216172264	33078357	2	53464										
RYR2	0	genome.wustl.edu	37	chr1	237813233	237813233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	aatcggtacctttgcacagcCgtcttgccattgttaacaag	8	11	1	0			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	237813233	237813233	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.7563	p.A2521	0.816	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	72	0	0	63	15	19.23	-	-	-	T	237813233	C	T	237813233	2	4	616	1	0	0	0	0	0	0	0	1	13855	639	23	1		1	RYR2	1	237813233	Silent	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	21640969	237813233	11437388	3	53465										
CHML	0	genome.wustl.edu	37	chr1	241798530	241798530	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	aagttttatctccacaatacTtttccttctccactgattcc	2	13	2	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	241798530	241798530	T	G	SNP	CHML	ENST00000366553	human	ensembl	69_37n	-1	known	missense	c.539	p.K180T	0.075	pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	184	0	0	152	55	26.57	-	-	-	G	241798530	T	G	241798530	3	3	616	1	0	0	0	0	1	0	0	0	3380	1609	56	5	1435	5	CHML	1	241798530	Missense_Mutation	SNP	T	TCGA-BH-A28Q-01A-11D-A16D-09	3985297	241798530	7452091	4	53466										
TTLL4	0	genome.wustl.edu	37	chr2	219609846	219609846	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	tcttagaagctgtatggaaaTtctgaccaaacccctttcca	6	11	2	2			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	2	219609846	219609846	T	C	SNP	TTLL4	ENST00000258398	human	ensembl	69_37n	1	known	missense	c.1676	p.I559T	0.070	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC	ENSG00000135912	114	0	0	56	33	37.08	-	-	-	C	219609846	T	C	219609846	3	2	616	1	0	0	0	0	1	0	0	0	16826	1493	52	5	1690	5	TTLL4	2	219609846	Missense_Mutation	SNP	T	TCGA-BH-A28Q-01A-11D-A16D-09		219609846	23589527	5	53467										
APC	0	genome.wustl.edu	37	chr5	112173676	112173676	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	cagagacacaagcaaagtctCtatggtgattatgtttttga	9	6	1	3			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	5	112173676	112173676	C	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	silent	c.2385	p.L795	0.334	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	27	0	0	16	6	27.27	-	-	-	T	112173676	C	T	112173676	2	4	616	1	0	0	0	0	0	0	0	1	764	900	32	2		2	APC	5	112173676	Silent	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09		112173676	68741584	6	53468										
ROS1	0	genome.wustl.edu	37	chr6	117642471	117642471	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	tactccggctgccagacctcGcagctcagccaactctttgt	8	16	2	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	6	117642471	117642471	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	nonsense	c.5728	p.R1910*	0.587	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	71	0	0	33	6	15.38	-	-	-	A	117642471	G	A	117642471	4	1	616	1	0	0	0	0	0	1	0	0	13617	1095	38	1	1351	1	ROS1	6	117642471	Nonsense_Mutation	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		117642471	53472596	7	53469										
TPM2	0	genome.wustl.edu	37	chr9	35685029	35685029	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	ggtgagctgagagaaggcgcCattgcccagaaaggttcaga	15	8	1	5			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	9	35685029	35685029	C	A	SNP	TPM2	ENST00000471212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPM2	HGNC	ENSG00000198467	32	0	0	15	9	37.5	-	-	-	A	35685029	C	A	35685029	1	1	616	0	1	0	0	0	0	0	0	0	16502	609	21	4		4	TPM2	9	35685029	RNA	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09		35685029	105528402	8	53470										
CH25H	0	genome.wustl.edu	37	chr10	90966611	90966611	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gtacagccagggcaccttgtGgtgcagcaggtgccacacga	14	12	0	0			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	10	90966611	90966611	G	T	SNP	CH25H	ENST00000371852	human	ensembl	69_37n	-1	known	missense	c.439	p.H147N	1.000	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	CH25H	HGNC	ENSG00000138135	49	0	0	21	15	41.67	-	-	-	T	90966611	G	T	90966611	3	4	616	1	0	0	0	0	1	0	0	0	3336	1348	47	4	383	4	CH25H	10	90966611	Missense_Mutation	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		90966611	44568136	9	53471										
MYBPC3	0	genome.wustl.edu	37	chr11	47373015	47373015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gaacacggcagggctgcctgCggccacttccactgaccgtg	13	15	0	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	11	47373015	47373015	C	T	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	missense	c.67	p.A23T	0.019	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	13	0	0	12	4	25	-	-	-	T	47373015	C	T	47373015	3	4	616	1	0	0	0	0	1	0	0	0	10085	768	27	1	3882	1	MYBPC3	11	47373015	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09		47373015	87633501	10	53472										
SCGB2A1	0	genome.wustl.edu	37	chr11	61977888	61977888	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	tttttttttttttccagattCtggctgcaaactcctggagg	8	8	1	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	11	61977888	61977888	C	G	SNP	SCGB2A1	ENST00000244930	human	ensembl	69_37n	1	known	missense	c.59	p.S20C	0.874	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB2A1	HGNC	ENSG00000124939	26	0	0	35	9	20	-	-	-	G	61977888	C	G	61977888	3	3	616	1	0	0	0	0	1	0	0	0	13986	913	32	2	65	2	SCGB2A1	11	61977888	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	14604873	61977888	73028628	11	53473										
BCL2L14	0	genome.wustl.edu	37	chr12	12232555	12232555	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	tagtggagaaggaagattcgCagagcacgcctgccaaggtc	14	9	0	3			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	12	12232555	12232555	C	G	SNP	BCL2L14	ENST00000308721	human	ensembl	69_37n	1	known	missense	c.316	p.Q106E	0.001	NULL	pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2L14	HGNC	ENSG00000121380	34	0	0	18	7	28	-	-	-	G	12232555	C	G	12232555	3	3	616	1	0	0	0	0	1	0	0	0	1376	711	25	4	318	4	BCL2L14	12	12232555	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09		12232555	121619340	12	53474										
TBX3	0	genome.wustl.edu	37	chr12	115120616	115120616	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gaggaggcccccactgcttaCcttcccgacttggtaatgac	10	14	0	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	12	115120616	115120616	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	splice_site	c.389+1	e1+1	1.000	-	-	-	no_errors	TBX3	HGNC	ENSG00000135111	15	0	0	6	7	53.85	-	-	-	T	115120616	C	T	115120616	5	4	616	1	0	0	0	0	0	0	1	0	15754	521	18	4	1873	4	TBX3	12	115120616	Splice_Site	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	102888061	115120616	18731279	13	53475										
POMT2	0	genome.wustl.edu	37	chr14	77767528	77767528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gaggccaacaaacttgacccCtaaagcaccagcaagactaa	7	13	0	2			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	14	77767528	77767528	C	T	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	missense	c.721	p.G241R	1.000	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830	43	0	0	20	14	41.18	-	-	-	T	77767528	C	T	77767528	3	4	616	1	0	0	0	0	1	0	0	0	12320	681	24	4	1595	4	POMT2	14	77767528	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09		77767528	29582012	14	53476										
BRF1	0	genome.wustl.edu	37	chr14	105695168	105695168	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gcccctcacctcttccgcagCgtggactcacacactttgac	7	18	3	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	14	105695168	105695168	C	A	SNP	BRF1	ENST00000546417	human	ensembl	69_37n	-1	putative	missense	c.337	p.A113S	0.036	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRF1	HGNC	ENSG00000185024	83	0	0	46	22	32.35	-	-	-	A	105695168	C	A	105695168	3	1	616	1	0	0	0	0	1	0	0	0	1518	755	27	3	1304	3	BRF1	14	105695168	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	27927640	105695168	1654372	15	53477										
GIT1	0	genome.wustl.edu	37	chr17	27903567	27903567	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	tgcagcctccggagctcgtcGctcaggctactgttgacctt	11	14	1	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	17	27903567	27903567	G	A	SNP	GIT1	ENST00000394869	human	ensembl	69_37n	-1	known	silent	c.1380	p.S460	0.995	NULL	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262	35	0	0	27	14	34.15	-	-	-	A	27903567	G	A	27903567	2	1	616	1	0	0	0	0	0	0	0	1	6448	1078	38	1		1	GIT1	17	27903567	Silent	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		27903567	53291643	16	53478										
DIP2A	0	genome.wustl.edu	37	chr21	47978254	47978254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	ggacctgggcctgccggcccGcgccgtaagcaccacgttcg	14	17	0	0			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	21	47978254	47978254	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.3920	p.R1307H	0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	19	0	0	14	4	22.22	-	-	-	A	47978254	G	A	47978254	3	1	616	1	0	0	0	0	1	0	0	0	4563	1087	38	1	4156	1	DIP2A	21	47978254	Missense_Mutation	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		47978254	151641	17	53479										
TOP3B	0	genome.wustl.edu	37	chr22	22318370	22318370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	gtcatggcctttccgcgggcGgttgataccttctgctaaca	11	12	2	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	22	22318370	22318370	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	missense	c.1129	p.R377C	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	32	0	0	42	15	26.32	-	-	-	A	22318370	G	A	22318370	3	1	616	1	0	0	0	0	1	0	0	0	16464	1116	39	1	1491	1	TOP3B	22	22318370	Missense_Mutation	SNP	G	TCGA-BH-A28Q-01A-11D-A16D-09		22318370	28986196	18	53480										
BRD1	0	genome.wustl.edu	37	chr22	50217038	50217038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	cctcaccccatcgatgggctCgatgaacaccgtgttggcaa	10	14	1	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	22	50217038	50217038	C	T	SNP	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	missense	c.928	p.E310K	1.000	superfamily_Znf_FYVE_PHD	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	18	0	0	17	8	32	-	-	-	T	50217038	C	T	50217038	3	4	616	1	0	0	0	0	1	0	0	0	1509	893	31	1	2296	1	BRD1	22	50217038	Missense_Mutation	SNP	C	TCGA-BH-A28Q-01A-11D-A16D-09	27898668	50217038	1087528	19	53481										
DCAF12L1	0	genome.wustl.edu	37	chrX	125686114	125686114	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.827819862835829	1.29464285714286	4.53125	0.755208333333333	1	1	0	ggtggccagaagcgtcttggAgggattcagctcgatggcat	16	8	2	1			TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	X	125686114	125686114	A	C	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	missense	c.478	p.S160A	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	47	0	0	38	23	37.7	-	-	-	C	125686114	A	C	125686114	3	2	616	1	0	0	0	0	1	0	0	0	4296	304	11	5	917	5	DCAF12L1	23	125686114	Missense_Mutation	SNP	A	TCGA-BH-A28Q-01A-11D-A16D-09		125686114	29584446	20	53482										
SKI	0	genome.wustl.edu	37	chr1	2234756	2234756	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gttcaccctcgccagcgcctCtctgctttccgaccctggtc	8	19	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	2234756	2234756	C	G	SNP	SKI	ENST00000378536	human	ensembl	69_37n	1	known	silent	c.1128	p.L376	0.999	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933	48	0	0	44	16	26.67	-	-	-	G	2234756	C	G	2234756	2	3	617	1	0	0	0	0	0	0	0	1	14446	900	32	2		2	SKI	1	2234756	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		2234756	247015865	1	53483										
PGD	0	genome.wustl.edu	37	chr1	10473184	10473184	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaaatcacagccaatattctCaagttccaagacaccgatgg	7	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	10473184	10473184	C	G	SNP	PGD	ENST00000460189	human	ensembl	69_37n	1	novel	missense	c.643	p.Q215E	1.000	pfam_6PGDH_C,superfamily_6-PGluconate_DH_C-like	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PGD	HGNC	ENSG00000142657	38	0	0	45	7	13.46	-	-	-	G	10473184	C	G	10473184	3	3	617	1	0	0	0	0	1	0	0	0	11861	813	29	2	750	2	PGD	1	10473184	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8238428	10473184	238777437	2	53484										
PTCHD2	0	genome.wustl.edu	37	chr1	11596435	11596435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aggccgtgcggcacgtgggcGtggccatcgtctccagtgcc	16	14	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	11596435	11596435	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	missense	c.3871	p.V1291M	1.000	pfam_Patched,pfam_MMPL-typ	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	39	0	0	27	4	12.9	-	-	-	A	11596435	G	A	11596435	3	1	617	1	0	0	0	0	1	0	0	0	12813	1145	40	1	3949	1	PTCHD2	1	11596435	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1123251	11596435	237654186	3	53485										
PADI3	0	genome.wustl.edu	37	chr1	17609485	17609485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccttcattgatgacttcactCcataccacatgctgcatggg	7	13	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	17609485	17609485	C	G	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	missense	c.1906	p.P636A	0.981	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	38	0	0	38	7	15.56	-	-	-	G	17609485	C	G	17609485	3	3	617	1	0	0	0	0	1	0	0	0	11452	855	30	2	1968	2	PADI3	1	17609485	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6013050	17609485	231641136	4	53486										
YTHDF2	0	genome.wustl.edu	37	chr1	29064088	29064088	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgctcctttattctcccttCgggccctgccttaatttgtt	6	14	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	29064088	29064088	C	A	SNP	YTHDF2	ENST00000478283	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	60	0	0	45	7	13.46	-	-	-	A	29064088	C	A	29064088	1	1	617	0	1	0	0	0	0	0	0	0	17596	899	31	3		3	YTHDF2	1	29064088	RNA	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11454603	29064088	220186533	5	53487										
HCRTR1	0	genome.wustl.edu	37	chr1	32092459	32092459	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcctgggtccctgcggctctCtgaaggcccctagtccccgc	12	18	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	32092459	32092459	C	T	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	1	known	silent	c.1156	p.L386	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	26	0	0	27	8	22.86	-	-	-	T	32092459	C	T	32092459	2	4	617	1	0	0	0	0	0	0	0	1	7052	912	32	2		2	HCRTR1	1	32092459	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3028371	32092459	217158162	6	53488										
TXLNA	0	genome.wustl.edu	37	chr1	32653608	32653608	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagctcctacagaaaaagcaGagccagctggtgcaagagaa	11	9	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	32653608	32653608	G	C	SNP	TXLNA	ENST00000373609	human	ensembl	69_37n	1	known	missense	c.651	p.Q217H	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNA	HGNC	ENSG00000084652	31	0	0	18	5	21.74	-	-	-	C	32653608	G	C	32653608	3	2	617	1	0	0	0	0	1	0	0	0	16884	933	33	2	665	2	TXLNA	1	32653608	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	561149	32653608	216597013	7	53489										
EIF2C1	0	genome.wustl.edu	37	chr1	36372627	36372627	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcaaatatgcacagggggcaGacagcgtggagcctatgttc	14	9	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	36372627	36372627	G	C	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.1489	p.D497H	1.000	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	61	0	0	35	10	22.22	-	-	-	C	36372627	G	C	36372627	3	2	617	1	0	0	0	0	1	0	0	0	5040	942	33	2	1535	2	EIF2C1	1	36372627	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3719019	36372627	212877994	8	53490										
MACF1	0	genome.wustl.edu	37	chr1	39757591	39757591	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttctttttcagatgaaactgGagcgagcagagtggggcaat	13	6	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	39757591	39757591	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.1810	p.E604Q	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	32	0	0	33	4	10.81	-	-	-	C	39757591	G	C	39757591	3	2	617	1	0	0	0	0	1	0	0	0	9211	1175	41	2	1868	2	MACF1	1	39757591	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3384964	39757591	209493030	9	53491										
HEYL	0	genome.wustl.edu	37	chr1	40098333	40098333	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acactcacccctctgtgtttCttcctggcttgcatctgcga	7	15	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	40098333	40098333	C	T	SNP	HEYL	ENST00000372852	human	ensembl	69_37n	-1	known	silent	c.135	p.K45	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEYL	HGNC	ENSG00000163909	90	0	0	42	12	21.82	-	-	-	T	40098333	C	T	40098333	2	4	617	1	0	0	0	0	0	0	0	1	7131	912	32	2		2	HEYL	1	40098333	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	340742	40098333	209152288	10	53492										
RLF	0	genome.wustl.edu	37	chr1	40661308	40661308	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gctgttcttgttctaggagtCacatgatgcattattggaat	10	6	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	40661308	40661308	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.479	p.S160L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	54	0	0	40	13	24.53	-	-	-	T	40661308	C	T	40661308	3	4	617	1	0	0	0	0	1	0	0	0	13475	838	29	2	493	2	RLF	1	40661308	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	562975	40661308	208589313	11	53493										
GUCA2B	0	genome.wustl.edu	37	chr1	42619187	42619187	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtcctcctgctgctgctgcaGagcacacagtcagtctacat	9	14	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	42619187	42619187	G	A	SNP	GUCA2B	ENST00000372581	human	ensembl	69_37n	1	known	silent	c.66	p.Q22	0.984	pfam_Guanylin,pirsf_Guanylin,prints_Guanylin	pfam_Guanylin,superfamily_Guanylin,pirsf_Guanylin,prints_Guanylin	-	no_errors	GUCA2B	HGNC	ENSG00000044012	35	0	0	24	5	17.24	-	-	-	A	42619187	G	A	42619187	2	1	617	1	0	0	0	0	0	0	0	1	6943	933	33	2		2	GUCA2B	1	42619187	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1957879	42619187	206631434	12	53494										
POMGNT1	0	genome.wustl.edu	37	chr1	46662733	46662733	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atattgacaatgacagtcacCagcaggaaaagcacggcccc	9	12	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	46662733	46662733	C	T	SNP	POMGNT1	ENST00000371986	human	ensembl	69_37n	-1	known	silent	c.144	p.L48	1.000	NULL	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998	34	0	0	32	8	20	-	-	-	T	46662733	C	T	46662733	2	4	617	1	0	0	0	0	0	0	0	1	12317	581	21	4		4	POMGNT1	1	46662733	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4043546	46662733	202587888	13	53495										
DMRTB1	0	genome.wustl.edu	37	chr1	53930486	53930486	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctccatcatctttctcactGaccgtcctgtttgatactga	5	14	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	53930486	53930486	G	A	SNP	DMRTB1	ENST00000371445	human	ensembl	69_37n	1	known	silent	c.927	p.L309	0.471	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006	65	0	0	55	7	11.29	-	-	-	A	53930486	G	A	53930486	2	1	617	1	0	0	0	0	0	0	0	1	4626	1277	45	2		2	DMRTB1	1	53930486	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7267753	53930486	195320135	14	53496										
SH3GLB1	0	genome.wustl.edu	37	chr1	87181436	87181436	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaaaagcttggccaggctgaGaagacagaattggatgctca	13	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	87181436	87181436	G	A	SNP	SH3GLB1	ENST00000482504	human	ensembl	69_37n	1	known	silent	c.102	p.E34	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033	47	0	0	30	8	21.05	-	-	-	A	87181436	G	A	87181436	2	1	617	1	0	0	0	0	0	0	0	1	14342	933	33	2		2	SH3GLB1	1	87181436	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	33250950	87181436	162069185	15	53497										
GBP1	0	genome.wustl.edu	37	chr1	89524633	89524633	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtccacacaaagtctgggaaGaagctcacaaagtcagctga	10	10	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	89524633	89524633	G	A	SNP	GBP1	ENST00000370473	human	ensembl	69_37n	-1	known	silent	c.522	p.F174	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP1	HGNC	ENSG00000117228	95	0	0	73	18	19.57	-	-	-	A	89524633	G	A	89524633	2	1	617	1	0	0	0	0	0	0	0	1	6323	933	33	2		2	GBP1	1	89524633	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2343197	89524633	159725988	16	53498										
LRRC8C	0	genome.wustl.edu	37	chr1	90178302	90178302	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gataatctgccttccgaaaaGagtgcagcctgctcagaacc	9	12	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	90178302	90178302	G	C	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.173	p.R58T	0.998	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	31	0	0	23	6	20.69	-	-	-	C	90178302	G	C	90178302	3	2	617	1	0	0	0	0	1	0	0	0	9089	942	33	2	179	2	LRRC8C	1	90178302	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	653669	90178302	159072319	17	53499										
KCND3	0	genome.wustl.edu	37	chr1	112318791	112318791	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gggtggccgactttccccctCtggggttagcgctgggggag	18	11	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	112318791	112318791	C	T	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	missense	c.1876	p.E626K	1.000	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	60	0	0	57	15	20.83	-	-	-	T	112318791	C	T	112318791	3	4	617	1	0	0	0	0	1	0	0	0	8074	922	32	2	95	2	KCND3	1	112318791	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	22140489	112318791	136931830	18	53500										
ST7L	0	genome.wustl.edu	37	chr1	113084637	113084637	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaatggctatcattgctgtaGaagagcaaaatcctgctgtg	11	7	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	113084637	113084637	G	C	SNP	ST7L	ENST00000358039	human	ensembl	69_37n	-1	known	missense	c.1565	p.S522C	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341	60	0	0	60	12	16.67	-	-	-	C	113084637	G	C	113084637	3	2	617	1	0	0	0	0	1	0	0	0	15321	942	33	2	209	2	ST7L	1	113084637	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	765846	113084637	136165984	19	53501										
VANGL1	0	genome.wustl.edu	37	chr1	116206759	116206759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aatatgcagtctcccttgtgGatgccctcctcttcatccat	6	14	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	116206759	116206759	G	A	SNP	VANGL1	ENST00000310260	human	ensembl	69_37n	1	known	missense	c.682	p.D228N	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218	75	0	0	43	12	21.43	-	-	-	A	116206759	G	A	116206759	3	1	617	1	0	0	0	0	1	0	0	0	17216	1174	41	2	692	2	VANGL1	1	116206759	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3122122	116206759	133043862	20	53502										
VTCN1	0	genome.wustl.edu	37	chr1	117690304	117690304	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttagcatcaggtaagggctGagaggcagaagtgcccagct	14	8	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	117690304	117690304	G	T	SNP	VTCN1	ENST00000359008	human	ensembl	69_37n	-1	known	silent	c.834	p.L278	0.222	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VTCN1	HGNC	ENSG00000134258	79	0	0	64	11	14.67	-	-	-	T	117690304	G	T	117690304	2	4	617	1	0	0	0	0	0	0	0	1	17331	1277	45	2		2	VTCN1	1	117690304	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1483545	117690304	131560317	21	53503										
REG4	0	genome.wustl.edu	37	chr1	120345554	120345554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgaacacacaaccctcttctCtccatttcaccagccaaagg	4	16	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	120345554	120345554	C	G	SNP	REG4	ENST00000369401	human	ensembl	69_37n	-1	known	missense	c.302	p.R101T	0.079	NULL	superfamily_C-type_lectin_fold	-	no_errors	REG4	HGNC	ENSG00000134193	54	0	0	31	5	13.51	-	-	-	G	120345554	C	G	120345554	3	3	617	1	0	0	0	0	1	0	0	0	13297	913	32	2	430	2	REG4	1	120345554	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2655250	120345554	128905067	22	53504										
NOTCH2	0	genome.wustl.edu	37	chr1	120493424	120493424	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttggttcaggcatggatttGaggcacattcatcaatattc	9	8	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	120493424	120493424	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.2402	p.S801L	1.000	pirsf_Notch,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	60	0	0	54	15	21.74	-	-	-	A	120493424	G	A	120493424	3	1	617	1	0	0	0	0	1	0	0	0	10620	1294	45	2	5093	2	NOTCH2	1	120493424	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	147870	120493424	128757197	23	53505										
HIST2H3D	0	genome.wustl.edu	37	chr1	149784945	149784945	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagccccaccaggtaggcctCgctggcctcctgcagcgcca	11	19	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	149784945	149784945	C	G	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	missense	c.292	p.E98Q	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	46	0	0	30	4	11.76	-	-	-	G	149784945	C	G	149784945	3	3	617	1	0	0	0	0	1	0	0	0	7232	893	31	3	120	3	HIST2H3D	1	149784945	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	29291521	149784945	99465676	24	53506										
ARHGEF11	0	genome.wustl.edu	37	chr1	156946799	156946799	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aattctttttcttcctgcctCagcatattcctgaggatctg	6	11	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	156946799	156946799	C	G	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.558	p.L186	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	71	0	0	70	10	12.5	-	-	-	G	156946799	C	G	156946799	2	3	617	1	0	0	0	0	0	0	0	1	898	813	29	2		2	ARHGEF11	1	156946799	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	7161854	156946799	92303822	25	53507										
SLAMF9	0	genome.wustl.edu	37	chr1	159921589	159921589	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccagaattaccaagagcaaGaagatgagcaatcccttggc	10	10	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	159921589	159921589	G	C	SNP	SLAMF9	ENST00000368093	human	ensembl	69_37n	-1	known	missense	c.732	p.F244L	0.001	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF9	HGNC	ENSG00000162723	58	0	0	68	10	12.82	-	-	-	C	159921589	G	C	159921589	3	2	617	1	0	0	0	0	1	0	0	0	14460	942	33	2	141	2	SLAMF9	1	159921589	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2974790	159921589	89329032	26	53508										
COPA	0	genome.wustl.edu	37	chr1	160279994	160279994	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttacttactgtacaaagcagGactgcattttctgctggatt	8	8	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	160279994	160279994	G	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.1131	p.V377	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	77	0	0	98	18	15.52	-	-	-	A	160279994	G	A	160279994	2	1	617	1	0	0	0	0	0	0	0	1	3757	1161	41	2		2	COPA	1	160279994	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	358405	160279994	88970627	27	53509										
NCSTN	0	genome.wustl.edu	37	chr1	160323980	160323980	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcatcctcaggaggccaaatCagtcccagcctctcccacca	6	18	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	160323980	160323980	C	T	SNP	NCSTN	ENST00000294785	human	ensembl	69_37n	1	known	nonsense	c.1252	p.Q418*	0.000	pfam_Nicastrin	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736	103	0	0	74	14	15.91	-	-	-	T	160323980	C	T	160323980	4	4	617	1	0	0	0	0	0	1	0	0	10313	827	29	2	1294	2	NCSTN	1	160323980	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	43986	160323980	88926641	28	53510										
C1orf112	0	genome.wustl.edu	37	chr1	169796247	169796247	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctaaagcacaccaagaggaaAtagcaggtgctttcctagtg	10	9	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	169796247	169796247	A	G	SNP	C1orf112	ENST00000286031	human	ensembl	69_37n	1	known	missense	c.904	p.I302V	1.000	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	81	0	0	88	12	12	-	-	-	G	169796247	A	G	169796247	3	3	617	1	0	0	0	0	1	0	0	0	2004	101	4	5	938	5	C1orf112	1	169796247	Missense_Mutation	SNP	A	TCGA-BH-A2L8-01A-11D-A18P-09	9472267	169796247	79454374	29	53511										
RASAL2	0	genome.wustl.edu	37	chr1	178436496	178436496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gctgtggaagaggaactgaaGaaggatcatgctgagatgca	15	5	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	178436496	178436496	G	C	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.3618	p.K1206N	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	57	0	0	56	10	15.15	-	-	-	C	178436496	G	C	178436496	3	2	617	1	0	0	0	0	1	0	0	0	13147	933	33	2	3722	2	RASAL2	1	178436496	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8640249	178436496	70814125	30	53512										
HMCN1	0	genome.wustl.edu	37	chr1	186106009	186106009	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagaagatacctctgaatttGaatgtgttgctcgaaactta	8	6	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	186106009	186106009	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.13522	p.E4508Q	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	51	0	0	38	8	17.39	-	-	-	C	186106009	G	C	186106009	3	2	617	1	0	0	0	0	1	0	0	0	7271	1291	45	2	13868	2	HMCN1	1	186106009	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7669513	186106009	63144612	31	53513										
ZBTB41	0	genome.wustl.edu	37	chr1	197128914	197128914	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttgtcatcagatgagtactCaactggcaaggatacaagtt	9	7	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	197128914	197128914	C	G	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	missense	c.2305	p.E769Q	0.950	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	81	0	0	116	22	15.94	-	-	-	G	197128914	C	G	197128914	3	3	617	1	0	0	0	0	1	0	0	0	17639	835	29	2	428	2	ZBTB41	1	197128914	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11022905	197128914	52121707	32	53514										
KIF14	0	genome.wustl.edu	37	chr1	200569198	200569198	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgtaactcttttgtttcttGaagttttcttttttcagctt	5	7	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	200569198	200569198	G	C	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.2344	p.Q782E	0.997	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	58	0	0	59	16	21.33	-	-	-	C	200569198	G	C	200569198	3	2	617	1	0	0	0	0	1	0	0	0	8328	1299	45	2	2674	2	KIF14	1	200569198	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3440284	200569198	48681423	33	53515										
KIF21B	0	genome.wustl.edu	37	chr1	200960101	200960101	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggtcccccaagaagtggttGattttgcggttccactggcg	13	10	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	200960101	200960101	G	C	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.2631	p.I877M	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	39	0	0	33	4	10.81	-	-	-	C	200960101	G	C	200960101	3	2	617	1	0	0	0	0	1	0	0	0	8341	1280	45	2	2311	2	KIF21B	1	200960101	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	390903	200960101	48290520	34	53516										
ATP2B4	0	genome.wustl.edu	37	chr1	203702398	203702398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggagcctcttttaagggagtCctaaggcgacagaacatggg	14	8	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	203702398	203702398	C	T	SNP	ATP2B4	ENST00000356729	human	ensembl	69_37n	1	known	missense	c.251	p.S84F	1.000	pfam_ATP_Ca_trans_C	pfam_ATP_Ca_trans_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP2B4	HGNC	ENSG00000058668	58	0	0	92	12	11.54	-	-	-	T	203702398	C	T	203702398	3	4	617	1	0	0	0	0	1	0	0	0	1146	842	30	2	3435	2	ATP2B4	1	203702398	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2742297	203702398	45548223	35	53517										
LRRN2	0	genome.wustl.edu	37	chr1	204587686	204587686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccgcagctccagggtcccctCggggtacacccggtacctcc	11	19	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	204587686	204587686	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	missense	c.1435	p.E479K	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	46	0	0	22	6	21.43	-	-	-	T	204587686	C	T	204587686	3	4	617	1	0	0	0	0	1	0	0	0	9101	893	31	1	710	1	LRRN2	1	204587686	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	885288	204587686	44662935	36	53518										
SLC45A3	0	genome.wustl.edu	37	chr1	205628672	205628672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtggaggtgggagcaggccaCtgcctccagcacccacgtgt	15	13	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	205628672	205628672	C	T	SNP	SLC45A3	ENST00000367145	human	ensembl	69_37n	-1	known	missense	c.1352	p.S451N	0.005	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715	28	0	0	13	6	31.58	-	-	-	T	205628672	C	T	205628672	3	4	617	1	0	0	0	0	1	0	0	0	14731	565	20	4	313	4	SLC45A3	1	205628672	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1040986	205628672	43621949	37	53519										
USH2A	0	genome.wustl.edu	37	chr1	215853634	215853634	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtccaagggcttaaaatttCtcctgcatggtttgcagcca	9	10	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	215853634	215853634	C	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.12151	p.E4051Q	0.996	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	72	0	0	69	11	13.75	-	-	-	G	215853634	C	G	215853634	3	3	617	1	0	0	0	0	1	0	0	0	17133	922	32	2	3501	2	USH2A	1	215853634	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	10224962	215853634	33396987	38	53520										
ARF1	0	genome.wustl.edu	37	chr1	228284917	228284917	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcagggaagaccacgatcctCtacaagcttaagctgggtga	12	10	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	228284917	228284917	C	G	SNP	ARF1	ENST00000272102	human	ensembl	69_37n	1	known	silent	c.102	p.L34	0.994	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761	30	0	0	34	5	12.82	-	-	-	G	228284917	C	G	228284917	2	3	617	1	0	0	0	0	0	0	0	1	846	900	32	2		2	ARF1	1	228284917	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	12431283	228284917	20965704	39	53521										
OBSCN	0	genome.wustl.edu	37	chr1	228521392	228521392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcacaccctggagatcatctCcgtcacccgggaggactctg	11	15	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	228521392	228521392	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.15965	p.S5322C	0.094	pfam_Ig_I-set,smart_Ig_sub2,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	39	0	0	42	10	19.23	-	-	-	G	228521392	C	G	228521392	3	3	617	1	0	0	0	0	1	0	0	0	10885	855	30	2	16195	2	OBSCN	1	228521392	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	236475	228521392	20729229	40	53522										
KIAA1804	0	genome.wustl.edu	37	chr1	233490734	233490734	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tagaaattcaacaaatgtttGatgagttgagaacaaaggaa	9	3	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	233490734	233490734	G	A	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	missense	c.1288	p.D430N	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	37	0	0	24	7	21.88	-	-	-	A	233490734	G	A	233490734	3	1	617	1	0	0	0	0	1	0	0	0	8311	1290	45	2	1302	2	KIAA1804	1	233490734	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4969342	233490734	15759887	41	53523										
CEP170	0	genome.wustl.edu	37	chr1	243289797	243289797	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttccccatcggggttgaatCtattgaaatgtatactgaaa	8	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	243289797	243289797	C	G	SNP	CEP170	ENST00000466495	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CEP170	HGNC	ENSG00000143702	42	0	0	35	7	16.67	-	-	-	G	243289797	C	G	243289797	5	3	617	1	0	0	0	0	0	0	1	0	3279	913	32	2	49	2	CEP170	1	243289797	Splice_Site	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9799063	243289797	5960824	42	53524										
AHCTF1	0	genome.wustl.edu	37	chr1	247031055	247031055	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttgatgaaaacagatcttgtCaacacagttcctgttacaac	6	9	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	247031055	247031055	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.3174	p.L1058	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	104	1	0.95	85	22	20.56	-	-	-	T	247031055	C	T	247031055	2	4	617	1	0	0	0	0	0	0	0	1	408	825	29	2		2	AHCTF1	1	247031055	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3741258	247031055	2219566	43	53525										
ZNF669	0	genome.wustl.edu	37	chr1	247265074	247265074	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcgaagtgatcttcaatattCtggtctttccattggcttcc	7	10	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	247265074	247265074	C	T	SNP	ZNF669	ENST00000366501	human	ensembl	69_37n	-1	putative	missense	c.146	p.R49K	0.996	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	46	0	0	60	8	11.76	-	-	-	T	247265074	C	T	247265074	3	4	617	1	0	0	0	0	1	0	0	0	18172	912	32	2	994	2	ZNF669	1	247265074	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	234019	247265074	1985547	44	53526										
OR2L13	0	genome.wustl.edu	37	chr1	248262773	248262773	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcttgtgccttatcatcctCatattctttctggcctcggt	6	13	5	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	248262773	248262773	C	T	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	silent	c.96	p.L32	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	112	0	0	132	18	12	-	-	-	T	248262773	C	T	248262773	2	4	617	1	0	0	0	0	0	0	0	1	11079	813	29	2		2	OR2L13	1	248262773	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	997699	248262773	987848	45	53527										
OR14I1	0	genome.wustl.edu	37	chr1	248844944	248844944	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagggattctgagcaccgttGagaagatttggaaataggag	14	4	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	248844944	248844944	G	C	SNP	OR14I1	ENST00000342623	human	ensembl	69_37n	-1	known	nonsense	c.662	p.S221*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181	35	0	0	27	6	18.18	-	-	-	C	248844944	G	C	248844944	4	2	617	1	0	0	0	0	0	1	0	0	11020	1294	45	2	277	2	OR14I1	1	248844944	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	582171	248844944	405677	46	53528										
ZNF692	0	genome.wustl.edu	37	chr1	249152047	249152047	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgcacagaggacacagcctGaagaagtgtacctgccagca	11	12	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	1	249152047	249152047	G	C	SNP	ZNF692	ENST00000451251	human	ensembl	69_37n	-1	known	nonsense	c.206	p.S69*	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163	35	0	0	20	6	22.22	-	-	-	C	249152047	G	C	249152047	4	2	617	1	0	0	0	0	0	1	0	0	18193	1294	45	2	1408	2	ZNF692	1	249152047	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	307103	249152047	98574	47	53529										
CPSF3	0	genome.wustl.edu	37	chr2	9570957	9570957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaggaagaacatttatgactCatgccacaaaagctatttat	6	7	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	9570957	9570957	C	G	SNP	CPSF3	ENST00000238112	human	ensembl	69_37n	1	known	missense	c.289	p.H97D	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203	98	0	0	65	14	17.72	-	-	-	G	9570957	C	G	9570957	3	3	617	1	0	0	0	0	1	0	0	0	3856	826	29	2	303	2	CPSF3	2	9570957	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		9570957	233628416	48	53530										
GREB1	0	genome.wustl.edu	37	chr2	11752669	11752669	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggagaccccagacttacttgGagctggagggtctgccttgc	14	11	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	11752669	11752669	G	T	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	nonsense	c.3055	p.E1019*	1.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	95	0	0	86	17	16.35	-	-	-	T	11752669	G	T	11752669	4	4	617	1	0	0	0	0	0	1	0	0	6811	1175	41	2	3233	2	GREB1	2	11752669	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2181712	11752669	231446704	49	53531										
DDX1	0	genome.wustl.edu	37	chr2	15758356	15758356	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttataaataggatgcacaatCagattcctcaggttacctct	6	9	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	15758356	15758356	C	T	SNP	DDX1	ENST00000233084	human	ensembl	69_37n	1	known	nonsense	c.1168	p.Q390*	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785	80	0	0	72	15	17.24	-	-	-	T	15758356	C	T	15758356	4	4	617	1	0	0	0	0	0	1	0	0	4372	827	29	2	1230	2	DDX1	2	15758356	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4005687	15758356	227441017	50	53532										
EIF2B4	0	genome.wustl.edu	37	chr2	27592329	27592329	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccagtctctggttctgcccCcttttcttccttccgtttct	6	16	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	27592329	27592329	C	G	SNP	EIF2B4	ENST00000347454	human	ensembl	69_37n	-1	known	missense	c.163	p.G55R	0.947	NULL	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211	122	0	0	105	22	17.32	-	-	-	G	27592329	C	G	27592329	3	3	617	1	0	0	0	0	1	0	0	0	5038	623	22	4	1452	4	EIF2B4	2	27592329	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11833973	27592329	215607044	51	53533										
C2orf16	0	genome.wustl.edu	37	chr2	27800937	27800937	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcaagttgctcaatctgaaGaggtaatcctcatagatgtc	8	8	4	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	27800937	27800937	G	C	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.1498	p.E500Q	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	54	0	0	29	6	17.14	-	-	-	C	27800937	G	C	27800937	3	2	617	1	0	0	0	0	1	0	0	0	2177	943	33	2	1500	2	C2orf16	2	27800937	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	208608	27800937	215398436	52	53534										
HAAO	0	genome.wustl.edu	37	chr2	43015732	43015732	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctccgatgaacatgactttGagctgctcctggtgcctgca	10	13	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	43015732	43015732	G	C	SNP	HAAO	ENST00000294973	human	ensembl	69_37n	-1	known	silent	c.96	p.L32	1.000	pfam_3hydroanth_dOase,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882	74	0	0	75	18	19.35	-	-	-	C	43015732	G	C	43015732	2	2	617	1	0	0	0	0	0	0	0	1	6988	1277	45	2		2	HAAO	2	43015732	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15214795	43015732	200183641	53	53535										
LRPPRC	0	genome.wustl.edu	37	chr2	44161331	44161331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgtagttaaaatcacacctCaatgatcttcttggcctctt	5	11	5	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	44161331	44161331	C	T	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.2734	p.E912K	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	86	0	0	71	17	19.32	-	-	-	T	44161331	C	T	44161331	3	4	617	1	0	0	0	0	1	0	0	0	9031	835	29	2	1506	2	LRPPRC	2	44161331	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1145599	44161331	199038042	54	53536										
PAPOLG	0	genome.wustl.edu	37	chr2	60987417	60987417	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagtgtttgaagatgaggaaGaattgaaccacaggtatgtc	13	4	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	60987417	60987417	G	T	SNP	PAPOLG	ENST00000238714	human	ensembl	69_37n	1	known	nonsense	c.166	p.E56*	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421	44	0	0	28	12	30	-	-	-	T	60987417	G	T	60987417	4	4	617	1	0	0	0	0	0	1	0	0	11504	943	33	2	172	2	PAPOLG	2	60987417	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	16826086	60987417	182211956	55	53537										
IMMT	0	genome.wustl.edu	37	chr2	86371534	86371534	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tctggattcccccttcagctGattgacaaactttgctgcta	7	12	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	86371534	86371534	G	A	SNP	IMMT	ENST00000410111	human	ensembl	69_37n	-1	known	nonsense	c.2134	p.Q712*	1.000	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305	76	0	0	71	24	25.26	-	-	-	A	86371534	G	A	86371534	4	1	617	1	0	0	0	0	0	1	0	0	7772	1299	45	2	146	2	IMMT	2	86371534	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	25384117	86371534	156827839	56	53538										
CD8B	0	genome.wustl.edu	37	chr2	87049465	87049465	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgtatattcagtagtccattCtggaacatttctccagtgga	8	8	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	87049465	87049465	C	G	SNP	CD8B	ENST00000393759	human	ensembl	69_37n	-1	known	missense	c.653	p.R218T	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8B	HGNC	ENSG00000172116	61	0	0	76	12	13.64	-	-	-	G	87049465	C	G	87049465	3	3	617	1	0	0	0	0	1	0	0	0	3074	913	32	2	132	2	CD8B	2	87049465	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	677931	87049465	156149908	57	53539										
TSGA10	0	genome.wustl.edu	37	chr2	99651728	99651728	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atctttagcaaccagctgtcGattaagaagttctttgcttg	8	8	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	99651728	99651728	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	nonsense	c.1579	p.R527*	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	45	0	0	39	11	22	-	-	-	A	99651728	G	A	99651728	4	1	617	1	0	0	0	0	0	1	0	0	16713	1066	37	1	537	1	TSGA10	2	99651728	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12602263	99651728	143547645	58	53540										
BCL2L11	0	genome.wustl.edu	37	chr2	111881473	111881473	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgaaggcaatcacggaggtGaaggggacagctgcccccac	14	12	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	111881473	111881473	G	A	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	missense	c.151	p.E51K	1.000	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	36	0	0	14	6	30	-	-	-	A	111881473	G	A	111881473	3	1	617	1	0	0	0	0	1	0	0	0	1373	1291	45	2	153	2	BCL2L11	2	111881473	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12229745	111881473	131317900	59	53541										
GPR39	0	genome.wustl.edu	37	chr2	133174900	133174900	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atggagttctacagcatcatCtggaatcccctgaccacgtc	8	13	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	133174900	133174900	C	G	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	missense	c.285	p.I95M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	69	0	0	59	9	13.24	-	-	-	G	133174900	C	G	133174900	3	3	617	1	0	0	0	0	1	0	0	0	6743	903	32	2	287	2	GPR39	2	133174900	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	21293427	133174900	110024473	60	53542										
GPR39	0	genome.wustl.edu	37	chr2	133402801	133402801	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tacatgatcctcctccccttCtcggagacgtttttctacct	5	15	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	133402801	133402801	C	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	silent	c.984	p.F328	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	30	0	0	42	9	17.65	-	-	-	T	133402801	C	T	133402801	2	4	617	1	0	0	0	0	0	0	0	1	6743	912	32	2		2	GPR39	2	133402801	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	227901	133402801	109796572	61	53543										
PLA2R1	0	genome.wustl.edu	37	chr2	160803360	160803360	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaccatctggacagaagaacCaaaagcaaacagctcttcta	6	11	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	160803360	160803360	C	G	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.3919	p.G1307R	0.193	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	112	0	0	66	11	14.29	-	-	-	G	160803360	C	G	160803360	3	3	617	1	0	0	0	0	1	0	0	0	12084	594	21	4	496	4	PLA2R1	2	160803360	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	27400559	160803360	82396013	62	53544										
DPP4	0	genome.wustl.edu	37	chr2	162873352	162873352	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcagcattttatccaaagctGaattgtcttccaggactctc	7	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	162873352	162873352	G	A	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.1493	p.S498L	0.999	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	74	0	0	52	17	24.64	-	-	-	A	162873352	G	A	162873352	3	1	617	1	0	0	0	0	1	0	0	0	4764	1294	45	2	843	2	DPP4	2	162873352	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2069992	162873352	80326021	63	53545										
TTN	0	genome.wustl.edu	37	chr2	179397043	179397043	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caactcttcatcctccctctCagccatgattctttgccgtt	4	16	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	179397043	179397043	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.96595	p.E32199K	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	136	1	0.73	136	25	15.53	-	-	-	T	179397043	C	T	179397043	3	4	617	1	0	0	0	0	1	0	0	0	16832	835	29	2	3700	2	TTN	2	179397043	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	16523691	179397043	63802330	64	53546										
TTN	0	genome.wustl.edu	37	chr2	179425723	179425723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaggtcgccctgcaatgtctGcatttatcttaaggacctct	9	11	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	179425723	179425723	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.77432	p.A25811V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	60	0	0	82	20	19.61	-	-	-	A	179425723	G	A	179425723	3	1	617	1	0	0	0	0	1	0	0	0	16832	1319	46	4	22991	4	TTN	2	179425723	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	28680	179425723	63773650	65	53547										
TTN	0	genome.wustl.edu	37	chr2	179443670	179443670	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aggtggttttctggacagctGaggcgcacgtcacccacttg	13	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	179443670	179443670	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60383	p.S20128L	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0	41	10	19.61	-	-	-	A	179443670	G	A	179443670	3	1	617	1	0	0	0	0	1	0	0	0	16832	1294	45	2	40064	2	TTN	2	179443670	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	17947	179443670	63755703	66	53548										
ANKAR	0	genome.wustl.edu	37	chr2	190606108	190606108	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gctcattctagagctggtatCccagaagcatttaccacatt	7	11	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	190606108	190606108	C	T	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	silent	c.3741	p.I1247	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	29	0	0	40	8	16.67	-	-	-	T	190606108	C	T	190606108	2	4	617	1	0	0	0	0	0	0	0	1	623	845	30	2		2	ANKAR	2	190606108	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11162438	190606108	52593265	67	53549										
PARD3B	0	genome.wustl.edu	37	chr2	206166199	206166199	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tctgtacagacggtctgtctGataagagctctcactctggc	10	11	5	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	206166199	206166199	G	C	SNP	PARD3B	ENST00000406610	human	ensembl	69_37n	1	known	missense	c.2404	p.D802H	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	37	0	0	25	5	16.67	-	-	-	C	206166199	G	C	206166199	3	2	617	1	0	0	0	0	1	0	0	0	11517	1290	45	2	2474	2	PARD3B	2	206166199	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15560091	206166199	37033174	68	53550										
VWC2L	0	genome.wustl.edu	37	chr2	215301441	215301441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agttcctgagtgtgtcaaccCagtctatgaaccagaacaat	8	10	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	215301441	215301441	C	G	SNP	VWC2L	ENST00000312504	human	ensembl	69_37n	1	known	missense	c.479	p.P160R	1.000	smart_VWF_C,pfscan_VWF_C	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453	52	0	0	60	9	13.04	-	-	-	G	215301441	C	G	215301441	3	3	617	1	0	0	0	0	1	0	0	0	17341	594	21	4	485	4	VWC2L	2	215301441	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9135242	215301441	27897932	69	53551										
AGFG1	0	genome.wustl.edu	37	chr2	228401659	228401659	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgttgctgctgctggtccttCtgtggcatcttctacaaacc	9	12	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	228401659	228401659	C	T	SNP	AGFG1	ENST00000409979	human	ensembl	69_37n	1	known	missense	c.1400	p.S467F	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG1	HGNC	ENSG00000173744	99	0	0	60	17	21.79	-	-	-	T	228401659	C	T	228401659	3	4	617	1	0	0	0	0	1	0	0	0	380	913	32	2	1442	2	AGFG1	2	228401659	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13100218	228401659	14797714	70	53552										
MLPH	0	genome.wustl.edu	37	chr2	238449572	238449572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggacagagtggcagtgacggCctcagaagtccagcaggcag	16	10	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	238449572	238449572	C	T	SNP	MLPH	ENST00000264605	human	ensembl	69_37n	1	known	missense	c.1418	p.A473V	0.042	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MLPH	HGNC	ENSG00000115648	58	0	0	36	5	12.2	-	-	-	T	238449572	C	T	238449572	3	4	617	1	0	0	0	0	1	0	0	0	9704	739	26	4	1456	4	MLPH	2	238449572	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	10047913	238449572	4749801	71	53553										
KIF1A	0	genome.wustl.edu	37	chr2	241710399	241710399	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgccctcaccttcagtctttCaatggcctcctcgctgcccg	7	18	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	2	241710399	241710399	C	G	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444Q	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	37	0	0	30	11	26.83	-	-	-	G	241710399	C	G	241710399	3	3	617	1	0	0	0	0	1	0	0	0	8335	835	29	2	3905	2	KIF1A	2	241710399	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3260827	241710399	1488974	72	53554										
LRRN1	0	genome.wustl.edu	37	chr3	3886976	3886976	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcaaacccctcgcaaatttGagaagcttagttttggcagg	9	9	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	3886976	3886976	G	A	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	silent	c.651	p.L217	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	44	0	0	37	10	21.28	-	-	-	A	3886976	G	A	3886976	2	1	617	1	0	0	0	0	0	0	0	1	9100	1281	45	2		2	LRRN1	3	3886976	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		3886976	194135454	73	53555										
ATG7	0	genome.wustl.edu	37	chr3	11354835	11354835	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atcctgccctctgtcttccaGagagtttacctctcattcag	6	14	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	11354835	11354835	G	A	SNP	ATG7	ENST00000354449	human	ensembl	69_37n	1	known	missense	c.469	p.E157K	1.000	tigrfam_E1-like_Apg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	-	no_errors	ATG7	HGNC	ENSG00000197548	110	0	0	82	18	18	-	-	-	A	11354835	G	A	11354835	3	1	617	1	0	0	0	0	1	0	0	0	1105	943	33	2	487	2	ATG7	3	11354835	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7467859	11354835	186667595	74	53556										
CELSR3	0	genome.wustl.edu	37	chr3	48696405	48696405	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agctccccactggtctggttGactaccagcagctgcagctc	10	15	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	48696405	48696405	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	silent	c.3663	p.V1221	1.000	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	60	0	0	38	7	15.56	-	-	-	A	48696405	G	A	48696405	2	1	617	1	0	0	0	0	0	0	0	1	3252	1277	45	2		2	CELSR3	3	48696405	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	37341570	48696405	149326025	75	53557										
PRKAR2A	0	genome.wustl.edu	37	chr3	48793865	48793865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctctatgatgtaaaagctatCagccttttcaccctgaaaga	6	10	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	48793865	48793865	C	G	SNP	PRKAR2A	ENST00000265563	human	ensembl	69_37n	-1	known	missense	c.886	p.D296H	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2A	HGNC	ENSG00000114302	95	0	0	83	16	16.16	-	-	-	G	48793865	C	G	48793865	3	3	617	1	0	0	0	0	1	0	0	0	12586	826	29	2	340	2	PRKAR2A	3	48793865	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	97460	48793865	149228565	76	53558										
LAMB2	0	genome.wustl.edu	37	chr3	49169564	49169564	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggcaccttgaaggtcataatGaggtgtgtgaaatgaaactc	12	6	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	49169564	49169564	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	0.997	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	60	0	0	26	5	16.13	-	-	-	A	49169564	G	A	49169564	2	1	617	1	0	0	0	0	0	0	0	1	8665	1277	45	2		2	LAMB2	3	49169564	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	375699	49169564	148852866	77	53559										
CDHR4	0	genome.wustl.edu	37	chr3	49834418	49834418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caaccttgctcattgatggaGaaaggtccagggaagtgtgg	14	7	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	49834418	49834418	G	C	SNP	CDHR4	ENST00000412678	human	ensembl	69_37n	-1	known	missense	c.543	p.F181L	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492	60	0	0	27	6	18.18	-	-	-	C	49834418	G	C	49834418	3	2	617	1	0	0	0	0	1	0	0	0	3150	933	33	2	1883	2	CDHR4	3	49834418	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	664854	49834418	148188012	78	53560										
CACNA1D	0	genome.wustl.edu	37	chr3	53810705	53810705	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	actggtctattttggggcctCaccatttagatgaattcaaa	8	8	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	53810705	53810705	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.4498	p.H1500Y	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	78	0	0	65	13	16.67	-	-	-	T	53810705	C	T	53810705	3	4	617	1	0	0	0	0	1	0	0	0	2566	826	29	2	4752	2	CACNA1D	3	53810705	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3976287	53810705	144211725	79	53561										
SLMAP	0	genome.wustl.edu	37	chr3	57835511	57835511	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acactccaagtatgtactctCaggaactattccagctttct	5	12	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	57835511	57835511	C	G	SNP	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	missense	c.487	p.Q163E	1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	119	0	0	99	31	23.85	-	-	-	G	57835511	C	G	57835511	3	3	617	1	0	0	0	0	1	0	0	0	14838	827	29	2	505	2	SLMAP	3	57835511	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4024806	57835511	140186919	80	53562										
ROBO1	0	genome.wustl.edu	37	chr3	78666929	78666929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tccgctggaaatgttgtcctCctctgaggctgagccccagc	11	14	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	78666929	78666929	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.4138	p.E1380K	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	57	0	0	33	10	23.26	-	-	-	T	78666929	C	T	78666929	3	4	617	1	0	0	0	0	1	0	0	0	13599	864	30	2	837	2	ROBO1	3	78666929	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	20831418	78666929	119355501	81	53563										
TFG	0	genome.wustl.edu	37	chr3	100432575	100432575	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggaagctaatcatcaaagctCaacttggggaggatattcgg	12	7	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	100432575	100432575	C	T	SNP	TFG	ENST00000240851	human	ensembl	69_37n	1	known	nonsense	c.46	p.Q16*	1.000	pfam_OPR_PB1,smart_OPR_PB1	pfam_OPR_PB1,smart_OPR_PB1	-	no_errors	TFG	HGNC	ENSG00000114354	54	0	0	30	9	23.08	-	-	-	T	100432575	C	T	100432575	4	4	617	1	0	0	0	0	0	1	0	0	15901	827	29	2	48	2	TFG	3	100432575	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	21765646	100432575	97589855	82	53564										
GUCA1C	0	genome.wustl.edu	37	chr3	108672495	108672495	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acccaaaagtgtcttaaattCatgtagtgtttgcaggccgg	10	8	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	108672495	108672495	C	T	SNP	GUCA1C	ENST00000261047	human	ensembl	69_37n	-1	known	missense	c.115	p.E39K	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472	70	0	0	81	14	14.74	-	-	-	T	108672495	C	T	108672495	3	4	617	1	0	0	0	0	1	0	0	0	6941	835	29	2	530	2	GUCA1C	3	108672495	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8239920	108672495	89349935	83	53565										
KIAA1407	0	genome.wustl.edu	37	chr3	113755607	113755607	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttgaacggtggtactttcctCttcttcctccaaatagccac	6	13	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	113755607	113755607	C	G	SNP	KIAA1407	ENST00000295878	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	0.998	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617	113	0	0	114	21	15.56	-	-	-	G	113755607	C	G	113755607	3	3	617	1	0	0	0	0	1	0	0	0	8281	922	32	2	2420	2	KIAA1407	3	113755607	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	5083112	113755607	84266823	84	53566										
MCM2	0	genome.wustl.edu	37	chr3	127325047	127325047	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcctgcctgaggcaccggcgGagctgctgcagatctttgat	13	12	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	127325047	127325047	G	T	SNP	MCM2	ENST00000265056	human	ensembl	69_37n	1	known	nonsense	c.760	p.E254*	1.000	superfamily_NA-bd_OB-fold-like	pfam_MCM_DNA-dep_ATPase,pfam_MCM_2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111	59	0	0	34	4	10.26	-	-	-	T	127325047	G	T	127325047	4	4	617	1	0	0	0	0	0	1	0	0	9457	1175	41	2	778	2	MCM2	3	127325047	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	13569440	127325047	70697383	85	53567										
EPHB1	0	genome.wustl.edu	37	chr3	134851668	134851668	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gatgatgtgacctacaacatCatctgcaaaaagtgccgggc	10	10	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	134851668	134851668	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.1074	p.I358	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	27	0	0	21	7	25	-	-	-	T	134851668	C	T	134851668	2	4	617	1	0	0	0	0	0	0	0	1	5211	816	29	2		2	EPHB1	3	134851668	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	7526621	134851668	63170762	86	53568										
CLSTN2	0	genome.wustl.edu	37	chr3	139894828	139894828	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	catggatcgagacttcatatCatggagtcataactgagaac	9	8	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	139894828	139894828	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.145	p.H49Y	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	61	0	0	69	10	12.66	-	-	-	T	139894828	C	T	139894828	3	4	617	1	0	0	0	0	1	0	0	0	3592	826	29	2	151	2	CLSTN2	3	139894828	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	5043160	139894828	58127602	87	53569										
RNF13	0	genome.wustl.edu	37	chr3	149563824	149563824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttacaacgagatgctgctctCcatagggatgctcatgctgt	10	10	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	149563824	149563824	C	T	SNP	RNF13	ENST00000344229	human	ensembl	69_37n	1	known	missense	c.11	p.S4F	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF13	HGNC	ENSG00000082996	62	0	0	62	12	16.22	-	-	-	T	149563824	C	T	149563824	3	4	617	1	0	0	0	0	1	0	0	0	13523	855	30	2	13	2	RNF13	3	149563824	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9668996	149563824	48458606	88	53570										
PIK3CA	0	genome.wustl.edu	37	chr3	178952090	178952090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaatgaatgatgcacatcatGgtggctggacaacaaaaatg	10	6	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	178952090	178952090	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3145	p.G1049R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0	39	7	15.22	-	-	-	C	178952090	G	C	178952090	3	2	617	1	0	0	0	0	1	0	0	0	11987	1348	47	4	3223	4	PIK3CA	3	178952090	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	29388266	178952090	19070340	89	53571										
YEATS2	0	genome.wustl.edu	37	chr3	183435461	183435461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cgagatgctgctgtgcagaaGattgagactattatcaaaga	11	6	1	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	183435461	183435461	G	C	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.123	p.K41N	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	64	0	0	66	15	18.52	-	-	-	C	183435461	G	C	183435461	3	2	617	1	0	0	0	0	1	0	0	0	17569	933	33	2	129	2	YEATS2	3	183435461	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4483371	183435461	14586969	90	53572										
IGF2BP2	0	genome.wustl.edu	37	chr3	185375096	185375096	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgatagaggctccggcgaatCtcgccagctgtttgatgtgt	13	9	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	185375096	185375096	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455K	0.990	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	38	0	0	13	10	43.48	-	-	-	T	185375096	C	T	185375096	3	4	617	1	0	0	0	0	1	0	0	0	7628	913	32	2	455	2	IGF2BP2	3	185375096	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1939635	185375096	12647334	91	53573										
MASP1	0	genome.wustl.edu	37	chr3	186954290	186954290	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccacgggaagaggccaggctCagcatttcggcccccaatga	12	14	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	186954290	186954290	C	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	missense	c.1369	p.E457K	0.995	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	29	0	0	30	4	11.76	-	-	-	T	186954290	C	T	186954290	3	4	617	1	0	0	0	0	1	0	0	0	9393	835	29	2	1642	2	MASP1	3	186954290	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1579194	186954290	11068140	92	53574										
HES1	0	genome.wustl.edu	37	chr3	193854434	193854434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcctattatggagaaaagacGaagagcaagaataaatgaaa	10	4	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	193854434	193854434	G	A	SNP	HES1	ENST00000232424	human	ensembl	69_37n	1	known	missense	c.137	p.R46Q	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_Orange,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HES1	HGNC	ENSG00000114315	72	0	0	30	9	23.08	-	-	-	A	193854434	G	A	193854434	3	1	617	1	0	0	0	0	1	0	0	0	7116	1058	37	1	143	1	HES1	3	193854434	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6900144	193854434	4167996	93	53575										
PCYT1A	0	genome.wustl.edu	37	chr3	195968822	195968822	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtaaggctggaactcacgttGataaagctgacattgagctc	11	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	195968822	195968822	G	T	SNP	PCYT1A	ENST00000292823	human	ensembl	69_37n	-1	known	silent	c.705	p.I235	1.000	superfamily_NA-bd_OB-fold-like	pfam_Cytidylyltransf,superfamily_NA-bd_OB-fold-like,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1A	HGNC	ENSG00000161217	38	0	0	28	8	22.22	-	-	-	T	195968822	G	T	195968822	2	4	617	1	0	0	0	0	0	0	0	1	11683	1280	45	2		2	PCYT1A	3	195968822	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2114388	195968822	2053608	94	53576										
UBXN7	0	genome.wustl.edu	37	chr3	196088738	196088738	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagtttagcttgctctggaaGagtgatctgttccctttttc	9	9	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	3	196088738	196088738	G	C	SNP	UBXN7	ENST00000296328	human	ensembl	69_37n	-1	known	missense	c.1285	p.L429V	1.000	pfam_UBX,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960	108	0	0	71	12	14.46	-	-	-	C	196088738	G	C	196088738	3	2	617	1	0	0	0	0	1	0	0	0	17015	942	33	2	192	2	UBXN7	3	196088738	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	119916	196088738	1933692	95	53577										
TNIP2	0	genome.wustl.edu	37	chr4	2744211	2744211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atacttggcagttttgctccCagcgtgaatccggccggcgt	12	12	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	2744211	2744211	C	T	SNP	TNIP2	ENST00000315423	human	ensembl	69_37n	-1	known	missense	c.1063	p.G355R	0.010	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884	24	0	0	15	8	34.78	-	-	-	T	2744211	C	T	2744211	3	4	617	1	0	0	0	0	1	0	0	0	16410	594	21	4	230	4	TNIP2	4	2744211	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		2744211	188410065	96	53578										
GRK4	0	genome.wustl.edu	37	chr4	2986304	2986304	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atactgacactgcctcctgtCagccagtgcagtgagcttag	10	12	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	2986304	2986304	C	A	SNP	GRK4	ENST00000398052	human	ensembl	69_37n	1	known	silent	c.117	p.V39	0.970	superfamily_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388	26	0	0	17	6	26.09	-	-	-	A	2986304	C	A	2986304	2	1	617	1	0	0	0	0	0	0	0	1	6842	813	29	2		2	GRK4	4	2986304	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	242093	2986304	188167972	97	53579										
EVC2	0	genome.wustl.edu	37	chr4	5642323	5642323	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	actggttttccatcttctttCttgtttccaggtcacattca	5	11	5	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	5642323	5642323	C	G	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	missense	c.1388	p.R463T	0.994	pfam_EVC2-like	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	88	0	0	120	27	18.37	-	-	-	G	5642323	C	G	5642323	3	3	617	1	0	0	0	0	1	0	0	0	5323	913	32	2	2590	2	EVC2	4	5642323	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2656019	5642323	185511953	98	53580										
LPHN3	0	genome.wustl.edu	37	chr4	62800719	62800719	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttttgaagactgacattgtCagggagaatacagacaatat	9	6	1	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	62800719	62800719	C	T	SNP	LPHN3	ENST00000502815	human	ensembl	69_37n	1	known	nonsense	c.442	p.Q148*	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,prints_GPCR_2_latrophilin,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LPHN3	HGNC	ENSG00000150471	74	0	0	55	9	14.06	-	-	-	T	62800719	C	T	62800719	4	4	617	1	0	0	0	0	0	1	0	0	8983	813	29	2	2112	2	LPHN3	4	62800719	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	57158396	62800719	128353557	99	53581										
G3BP2	0	genome.wustl.edu	37	chr4	76570845	76570845	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttgcagctcttgtttttttCtcttccacatttaaacgtac	4	11	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	76570845	76570845	C	G	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.1218	p.E406D	1.000	pfscan_RRM_dom	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	150	0	0	137	18	11.61	-	-	-	G	76570845	C	G	76570845	3	3	617	1	0	0	0	0	1	0	0	0	6191	912	32	2	234	2	G3BP2	4	76570845	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13770126	76570845	114583431	100	53582										
FGF5	0	genome.wustl.edu	37	chr4	81196118	81196118	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtaggaatacgaggagttttCagcaacaaatttttagcgat	10	5	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	81196118	81196118	C	T	SNP	FGF5	ENST00000312465	human	ensembl	69_37n	1	known	silent	c.411	p.F137	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF5	HGNC	ENSG00000138675	97	0	0	92	12	11.54	-	-	-	T	81196118	C	T	81196118	2	4	617	1	0	0	0	0	0	0	0	1	5901	825	29	2		2	FGF5	4	81196118	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4625273	81196118	109958158	101	53583										
PTPN13	0	genome.wustl.edu	37	chr4	87694013	87694013	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgcttcctctagttcgatgGataagtatcatatacatcac	6	10	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	87694013	87694013	G	C	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.5266	p.D1756H	0.321	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	55	0	0	46	10	17.86	-	-	-	C	87694013	G	C	87694013	3	2	617	1	0	0	0	0	1	0	0	0	12863	1174	41	2	5388	2	PTPN13	4	87694013	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6497895	87694013	103460263	102	53584										
NUDT9	0	genome.wustl.edu	37	chr4	88370351	88370351	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctgtttctgggaagcatatCttacaatttgttgcaataaa	7	7	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	88370351	88370351	C	G	SNP	NUDT9	ENST00000302174	human	ensembl	69_37n	1	known	missense	c.588	p.I196M	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT9	HGNC	ENSG00000170502	77	0	0	46	17	26.56	-	-	-	G	88370351	C	G	88370351	3	3	617	1	0	0	0	0	1	0	0	0	10819	903	32	2	606	2	NUDT9	4	88370351	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	676338	88370351	102783925	103	53585										
ADH5	0	genome.wustl.edu	37	chr4	99997568	99997568	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acattcagtggctccaaactCtttggcccttgcaaatttat	6	11	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	99997568	99997568	C	T	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	0.998	pfam_ADH_C,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	50	0	0	55	8	12.7	-	-	-	T	99997568	C	T	99997568	3	4	617	1	0	0	0	0	1	0	0	0	311	922	32	2	440	2	ADH5	4	99997568	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11627217	99997568	91156708	104	53586										
PPA2	0	genome.wustl.edu	37	chr4	106317458	106317458	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagcaatgctttccaacattGatgagtggatttaataactt	7	6	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	106317458	106317458	G	C	SNP	PPA2	ENST00000357415	human	ensembl	69_37n	-1	known	missense	c.862	p.Q288E	0.985	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA2	HGNC	ENSG00000138777	42	0	0	32	5	13.51	-	-	-	C	106317458	G	C	106317458	3	2	617	1	0	0	0	0	1	0	0	0	12360	1299	45	2	203	2	PPA2	4	106317458	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6319890	106317458	84836818	105	53587										
SYNPO2	0	genome.wustl.edu	37	chr4	119951272	119951272	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcgaatcagaggtggatgaaGagttattgtctgacgttgac	14	5	2	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	119951272	119951272	G	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.1342	p.E448K	0.995	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	85	0	0	65	26	28.57	-	-	-	A	119951272	G	A	119951272	3	1	617	1	0	0	0	0	1	0	0	0	15549	943	33	2	1356	2	SYNPO2	4	119951272	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	13633814	119951272	71203004	106	53588										
KIAA1109	0	genome.wustl.edu	37	chr4	123277097	123277097	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cattaccaaggatgcagcttGactttaaatccattcatgtt	6	9	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	123277097	123277097	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.14452	p.D4818N	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	81	0	0	75	10	11.76	-	-	-	A	123277097	G	A	123277097	3	1	617	1	0	0	0	0	1	0	0	0	8260	1290	45	2	14774	2	KIAA1109	4	123277097	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3325825	123277097	67877179	107	53589										
C4orf33	0	genome.wustl.edu	37	chr4	130023848	130023848	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggctgaatccaggtgacaGaggagtgatgatggacatta	14	6	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	130023848	130023848	G	A	SNP	C4orf33	ENST00000281146	human	ensembl	69_37n	1	known	missense	c.83	p.R28K	0.001	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470	72	0	0	68	14	17.07	-	-	-	A	130023848	G	A	130023848	3	1	617	1	0	0	0	0	1	0	0	0	2284	942	33	2	85	2	C4orf33	4	130023848	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6746751	130023848	61130428	108	53590										
DCLK2	0	genome.wustl.edu	37	chr4	151153941	151153941	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcaggtatctccatggcctCagcatcgtgcacagagacat	9	13	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	151153941	151153941	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	silent	c.1578	p.L526	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	62	0	0	76	15	16.48	-	-	-	T	151153941	C	T	151153941	2	4	617	1	0	0	0	0	0	0	0	1	4323	813	29	2		2	DCLK2	4	151153941	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	21130093	151153941	40000335	109	53591										
FBXW7	0	genome.wustl.edu	37	chr4	153250865	153250865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aacttttaaagtgttgtcatCagaaccactaactattcggt	6	8	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	153250865	153250865	C	G	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1195	p.D399H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	60	0	0	45	11	19.64	-	-	-	G	153250865	C	G	153250865	3	3	617	1	0	0	0	0	1	0	0	0	5815	826	29	2	948	2	FBXW7	4	153250865	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2096924	153250865	37903411	110	53592										
TDO2	0	genome.wustl.edu	37	chr4	156825210	156825210	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccgtagaaggcagcgaagaaGacaaatcacaaactggtgtg	12	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	156825210	156825210	G	C	SNP	TDO2	ENST00000536354	human	ensembl	69_37n	1	known	missense	c.76	p.D26H	1.000	NULL	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790	68	0	0	45	6	11.76	-	-	-	C	156825210	G	C	156825210	3	2	617	1	0	0	0	0	1	0	0	0	15822	942	33	2	82	2	TDO2	4	156825210	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3574345	156825210	34329066	111	53593										
TRIM60	0	genome.wustl.edu	37	chr4	165961497	165961497	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aggagcaagagaaagaggcaGaaagagaatgccatgtgtga	15	4	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	165961497	165961497	G	A	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	1	known	silent	c.273	p.Q91	0.038	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	48	0	0	40	8	16.67	-	-	-	A	165961497	G	A	165961497	2	1	617	1	0	0	0	0	0	0	0	1	16631	933	33	2		2	TRIM60	4	165961497	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	9136287	165961497	25192779	112	53594										
ANXA10	0	genome.wustl.edu	37	chr4	169083772	169083772	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caccactgtatgatgctcatGagctctggcatgccatgaag	10	11	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	169083772	169083772	G	A	SNP	ANXA10	ENST00000359299	human	ensembl	69_37n	1	known	missense	c.289	p.E97K	1.000	pfam_Annexin_repeat,superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511	70	0	0	57	9	13.64	-	-	-	A	169083772	G	A	169083772	3	1	617	1	0	0	0	0	1	0	0	0	714	1291	45	2	303	2	ANXA10	4	169083772	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3122275	169083772	22070504	113	53595										
UFSP2	0	genome.wustl.edu	37	chr4	186336952	186336952	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtgtcctccgctttccctttCaatgatgggcgttacagctg	10	12	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	4	186336952	186336952	C	T	SNP	UFSP2	ENST00000264689	human	ensembl	69_37n	-1	known	missense	c.403	p.E135K	1.000	NULL	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775	57	0	0	45	9	16.67	-	-	-	T	186336952	C	T	186336952	3	4	617	1	0	0	0	0	1	0	0	0	17035	835	29	2	1038	2	UFSP2	4	186336952	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	17253180	186336952	4817324	114	53596										
PRDM9	0	genome.wustl.edu	37	chr5	23522825	23522825	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caaggggcaccccaaccgttCagccctcagtctgcccccag	9	19	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	23522825	23522825	C	T	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.713	p.S238L	0.990	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	55	0	0	68	8	10.39	-	-	-	T	23522825	C	T	23522825	3	4	617	1	0	0	0	0	1	0	0	0	12544	838	29	2	739	2	PRDM9	5	23522825	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		23522825	157392435	115	53597										
C9	0	genome.wustl.edu	37	chr5	39306855	39306855	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggttccacctcttatgagtGaaacaacatcatctatgagg	8	9	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	39306855	39306855	G	A	SNP	C9	ENST00000263408	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427L	0.474	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C9	HGNC	ENSG00000113600	52	0	0	48	11	18.64	-	-	-	A	39306855	G	A	39306855	3	1	617	1	0	0	0	0	1	0	0	0	2468	1294	45	2	411	2	C9	5	39306855	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15784030	39306855	141608405	116	53598										
FST	0	genome.wustl.edu	37	chr5	52778852	52778852	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtgaatgacaacacactcttCaagtggatgattttcaacgg	9	8	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	52778852	52778852	C	T	SNP	FST	ENST00000256759	human	ensembl	69_37n	1	known	silent	c.228	p.F76	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	FST	HGNC	ENSG00000134363	30	0	0	32	9	21.95	-	-	-	T	52778852	C	T	52778852	2	4	617	1	0	0	0	0	0	0	0	1	6125	825	29	2		2	FST	5	52778852	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13471997	52778852	128136408	117	53599										
DDX4	0	genome.wustl.edu	37	chr5	55081583	55081583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagtgacctacataccccctCctccacctgaggatgaggac	8	15	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	55081583	55081583	C	T	SNP	DDX4	ENST00000505374	human	ensembl	69_37n	1	known	missense	c.748	p.P250S	0.979	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	49	0	0	57	8	12.31	-	-	-	T	55081583	C	T	55081583	3	4	617	1	0	0	0	0	1	0	0	0	4391	855	30	2	835	2	DDX4	5	55081583	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2302731	55081583	125833677	118	53600										
PLK2	0	genome.wustl.edu	37	chr5	57750794	57750794	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttatcagattttagccactGaaggaggtagagccgaggtc	12	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	57750794	57750794	G	A	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	nonsense	c.1810	p.Q604*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	63	0	0	57	11	16.18	-	-	-	A	57750794	G	A	57750794	4	1	617	1	0	0	0	0	0	1	0	0	12170	1299	45	2	255	2	PLK2	5	57750794	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2669211	57750794	123164466	119	53601										
RASA1	0	genome.wustl.edu	37	chr5	86676366	86676366	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtgtttacagaaatctgttCagcataagtggcctacaaat	9	7	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	86676366	86676366	C	T	SNP	RASA1	ENST00000274376	human	ensembl	69_37n	1	known	nonsense	c.2644	p.Q882*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715	67	0	0	73	13	14.94	-	-	-	T	86676366	C	T	86676366	4	4	617	1	0	0	0	0	0	1	0	0	13143	827	29	2	2734	2	RASA1	5	86676366	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	28925572	86676366	94238894	120	53602										
GPR98	0	genome.wustl.edu	37	chr5	90002097	90002097	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctggaatgctgagtctgaaGaaccaaacagtaggaaacct	10	9	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	90002097	90002097	G	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.8616	p.K2872N	0.999	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	60	0	0	66	11	14.29	-	-	-	T	90002097	G	T	90002097	3	4	617	1	0	0	0	0	1	0	0	0	6772	933	33	2	8766	2	GPR98	5	90002097	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3325731	90002097	90913163	121	53603										
CAST	0	genome.wustl.edu	37	chr5	96090380	96090380	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aggagaaggccaaagaagaaGaccgtgaaaagcttggtgaa	14	5	0	6			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	96090380	96090380	G	C	SNP	CAST	ENST00000395813	human	ensembl	69_37n	1	known	missense	c.1645	p.D549H	0.877	pfam_Prot_inh_calpain	pfam_Prot_inh_calpain	-	no_errors	CAST	HGNC	ENSG00000153113	82	0	0	71	11	13.41	-	-	-	C	96090380	G	C	96090380	3	2	617	1	0	0	0	0	1	0	0	0	2709	942	33	2	1855	2	CAST	5	96090380	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6088283	96090380	84824880	122	53604										
RIOK2	0	genome.wustl.edu	37	chr5	96512941	96512941	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaaacgaggttcttcctagtCtgtgaagctttaatgcaaat	9	7	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	96512941	96512941	C	T	SNP	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	missense	c.377	p.R126K	1.000	pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	106	0	0	89	22	19.64	-	-	-	T	96512941	C	T	96512941	3	4	617	1	0	0	0	0	1	0	0	0	13464	913	32	2	1337	2	RIOK2	5	96512941	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	422561	96512941	84402319	123	53605										
LYRM7	0	genome.wustl.edu	37	chr5	130535233	130535233	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttttctttcagaactggtccCtaggaaagaccttcttgtag	8	9	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	130535233	130535233	C	G	SNP	LYRM7	ENST00000379380	human	ensembl	69_37n	1	known	missense	c.254	p.P85R	1.000	NULL	pfam_Complex1_LYR	-	no_errors	LYRM7	HGNC	ENSG00000186687	32	0	0	40	7	14.89	-	-	-	G	130535233	C	G	130535233	3	3	617	1	0	0	0	0	1	0	0	0	9190	681	24	4	272	4	LYRM7	5	130535233	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	34022292	130535233	50380027	124	53606										
PPP2CA	0	genome.wustl.edu	37	chr5	133533504	133533504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acgacgagtaacatgtggctCgcctctacgaggtgctgggt	14	10	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	133533504	133533504	C	T	SNP	PPP2CA	ENST00000481195	human	ensembl	69_37n	-1	known	missense	c.889	p.E297K	1.000	NULL	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CA	HGNC	ENSG00000113575	33	0	0	33	9	21.43	-	-	-	T	133533504	C	T	133533504	3	4	617	1	0	0	0	0	1	0	0	0	12457	893	31	1	44	1	PPP2CA	5	133533504	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2998271	133533504	47381756	125	53607										
FAM13B	0	genome.wustl.edu	37	chr5	137342812	137342812	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttccagcttttcatcttcctCttcttcctcagaaagttcat	3	13	6	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	137342812	137342812	C	G	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.715	p.E239Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	98	0	0	116	17	12.78	-	-	-	G	137342812	C	G	137342812	3	3	617	1	0	0	0	0	1	0	0	0	5493	922	32	2	2170	2	FAM13B	5	137342812	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3809308	137342812	43572448	126	53608										
PCDHB2	0	genome.wustl.edu	37	chr5	140474807	140474807	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagaaatacttttgaaaattCcagaaagtatcactcctgga	6	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	140474807	140474807	C	G	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.433	p.P145A	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	19	0	0	13	4	23.53	-	-	-	G	140474807	C	G	140474807	3	3	617	1	0	0	0	0	1	0	0	0	11615	855	30	2	435	2	PCDHB2	5	140474807	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3131995	140474807	40440453	127	53609										
PCDHB6	0	genome.wustl.edu	37	chr5	140530263	140530263	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agaaatgctcctgaaaatatCagaaattactatgccaggaa	7	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	140530263	140530263	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.425	p.S142L	0.237	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	39	0	0	29	7	19.44	-	-	-	T	140530263	C	T	140530263	3	4	617	1	0	0	0	0	1	0	0	0	11619	838	29	2	427	2	PCDHB6	5	140530263	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	55456	140530263	40384997	128	53610										
PCDHGA4	0	genome.wustl.edu	37	chr5	140737104	140737104	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cccagctatgcagacacgctCatcagccgggagagttgtga	12	12	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	140737104	140737104	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	silent	c.2337	p.L779	0.999	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	40	0	0	49	11	18.33	-	-	-	T	140737104	C	T	140737104	2	4	617	1	0	0	0	0	0	0	0	1	11629	813	29	2		2	PCDHGA4	5	140737104	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	206841	140737104	40178156	129	53611										
PDGFRB	0	genome.wustl.edu	37	chr5	149495436	149495436	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcaagctggggctctggctCtggttcgtcctggggctcca	14	13	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	149495436	149495436	C	T	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.3211	p.E1071K	0.953	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	80	0	0	74	14	15.91	-	-	-	T	149495436	C	T	149495436	3	4	617	1	0	0	0	0	1	0	0	0	11735	922	32	2	113	2	PDGFRB	5	149495436	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8758332	149495436	31419824	130	53612										
SYNPO	0	genome.wustl.edu	37	chr5	150028289	150028289	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggcaccggctgaggaggtgaGatgcagcacactcctaattg	14	10	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	150028289	150028289	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	missense	c.1184	p.R395K	0.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	57	0	0	33	8	19.51	-	-	-	A	150028289	G	A	150028289	3	1	617	1	0	0	0	0	1	0	0	0	15548	942	33	2	1190	2	SYNPO	5	150028289	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	532853	150028289	30886971	131	53613										
FAT2	0	genome.wustl.edu	37	chr5	150945893	150945893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccccagtgagagggtggaggGagaacttctctgtgggactt	16	8	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	150945893	150945893	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.2600	p.S867F	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	45	0	0	60	8	11.76	-	-	-	A	150945893	G	A	150945893	3	1	617	1	0	0	0	0	1	0	0	0	5736	1174	41	2	10541	2	FAT2	5	150945893	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	917604	150945893	29969367	132	53614										
FAT2	0	genome.wustl.edu	37	chr5	150946822	150946822	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aacataggctggttgtcattCaagttcctgagctgaagaaa	10	7	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	150946822	150946822	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.1671	p.L557F	0.992	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	25	0	0	17	5	22.73	-	-	-	G	150946822	C	G	150946822	3	3	617	1	0	0	0	0	1	0	0	0	5736	825	29	2	11470	2	FAT2	5	150946822	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	929	150946822	29968438	133	53615										
GRIA1	0	genome.wustl.edu	37	chr5	153149727	153149727	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctttgtttctgtccctaccaGaggtctaaaattgctgtgtt	8	9	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	153149727	153149727	G	C	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	splice_site	c.2053-1	e13-1	1.000	-	-	-	no_errors	GRIA1	HGNC	ENSG00000155511	78	0	0	97	15	13.39	-	-	-	C	153149727	G	C	153149727	5	2	617	1	0	0	0	0	0	0	1	0	6818	956	33	2	2072	2	GRIA1	5	153149727	Splice_Site	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2202905	153149727	27765533	134	53616										
STK10	0	genome.wustl.edu	37	chr5	171488249	171488249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccagctccaggtcctccttCtgcttggctacaaagtcccg	9	16	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	5	171488249	171488249	C	G	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	missense	c.2106	p.Q702H	1.000	pfam_PKK	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	49	0	0	74	13	14.94	-	-	-	G	171488249	C	G	171488249	3	3	617	1	0	0	0	0	1	0	0	0	15377	912	32	2	824	2	STK10	5	171488249	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	18338522	171488249	9427011	135	53617										
SSR1	0	genome.wustl.edu	37	chr6	7295635	7295635	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gactacttactgatttgattCaatgtttcctgaggaatcca	7	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	7295635	7295635	C	T	SNP	SSR1	ENST00000244763	human	ensembl	69_37n	-1	known	silent	c.783	p.L261	1.000	pfam_TRAP_alpha	pfam_TRAP_alpha	-	no_errors	SSR1	HGNC	ENSG00000124783	102	0	0	84	14	14.29	-	-	-	T	7295635	C	T	7295635	2	4	617	1	0	0	0	0	0	0	0	1	15281	825	29	2		2	SSR1	6	7295635	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		7295635	163819432	136	53618										
DSP	0	genome.wustl.edu	37	chr6	7579712	7579712	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggaagtcggctaagcaaaatCtagacaagtgctacggccaa	11	9	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	7579712	7579712	C	G	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.3289	p.L1097V	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	46	0	0	31	5	13.89	-	-	-	G	7579712	C	G	7579712	3	3	617	1	0	0	0	0	1	0	0	0	4816	912	32	2	3379	2	DSP	6	7579712	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	284077	7579712	163535355	137	53619										
NRSN1	0	genome.wustl.edu	37	chr6	24134607	24134607	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggcaggcacaggctgcagctGagggtggttaccagcgctat	16	10	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	24134607	24134607	G	A	SNP	NRSN1	ENST00000378491	human	ensembl	69_37n	1	known	missense	c.52	p.E18K	0.957	NULL	NULL	-	no_errors	NRSN1	HGNC	ENSG00000152954	65	0	0	57	9	13.64	-	-	-	A	24134607	G	A	24134607	3	1	617	1	0	0	0	0	1	0	0	0	10735	1291	45	2	54	2	NRSN1	6	24134607	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	16554895	24134607	146980460	138	53620										
NFKBIL1	0	genome.wustl.edu	37	chr6	31525610	31525610	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaggacgagtggcaggaagtCatggggaggtttgaaggtga	20	3	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	31525610	31525610	C	T	SNP	NFKBIL1	ENST00000376148	human	ensembl	69_37n	1	known	silent	c.540	p.V180	0.979	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBIL1	HGNC	ENSG00000204498	35	0	0	23	4	14.81	-	-	-	T	31525610	C	T	31525610	2	4	617	1	0	0	0	0	0	0	0	1	10453	813	29	2		2	NFKBIL1	6	31525610	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	7391003	31525610	139589457	139	53621										
RPL10A	0	genome.wustl.edu	37	chr6	35438059	35438059	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggaaagttcccttccctgctCacacacaacgaaaacatggt	7	13	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	35438059	35438059	C	G	SNP	RPL10A	ENST00000322203	human	ensembl	69_37n	1	known	silent	c.414	p.L138	1.000	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF,pirsf_Ribosomal_L1	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755	21	0	0	15	8	34.78	-	-	-	G	35438059	C	G	35438059	2	3	617	1	0	0	0	0	0	0	0	1	13641	813	29	2		2	RPL10A	6	35438059	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3912449	35438059	135677008	140	53622										
STK38	0	genome.wustl.edu	37	chr6	36489522	36489522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtgctttacctgctctttttCaagcatatctgctttacgga	7	10	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	36489522	36489522	C	G	SNP	STK38	ENST00000229812	human	ensembl	69_37n	-1	known	missense	c.379	p.E127Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38	HGNC	ENSG00000112079	52	0	0	59	13	18.06	-	-	-	G	36489522	C	G	36489522	3	3	617	1	0	0	0	0	1	0	0	0	15394	835	29	2	1058	2	STK38	6	36489522	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1051463	36489522	134625545	141	53623										
TREML4	0	genome.wustl.edu	37	chr6	41196523	41196523	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caatgccagtactcacccaaGagagggccctatcagcccaa	8	15	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	41196523	41196523	G	C	SNP	TREML4	ENST00000341495	human	ensembl	69_37n	1	known	missense	c.135	p.K45N	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TREML4	HGNC	ENSG00000188056	39	0	0	41	12	22.64	-	-	-	C	41196523	G	C	41196523	3	2	617	1	0	0	0	0	1	0	0	0	16570	933	33	2	141	2	TREML4	6	41196523	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4707001	41196523	129918544	142	53624										
PLA2G7	0	genome.wustl.edu	37	chr6	46677151	46677151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctattttttccctatcaataGagtcctatttgaaaaagcat	4	8	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	46677151	46677151	G	C	SNP	PLA2G7	ENST00000274793	human	ensembl	69_37n	-1	known	missense	c.782	p.S261C	0.999	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	-	no_errors	PLA2G7	HGNC	ENSG00000146070	62	0	0	51	10	16.39	-	-	-	C	46677151	G	C	46677151	3	2	617	1	0	0	0	0	1	0	0	0	12083	942	33	2	559	2	PLA2G7	6	46677151	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5480628	46677151	124437916	143	53625										
SMAP1	0	genome.wustl.edu	37	chr6	71567695	71567695	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcatttcagggctttccatcGatgggcgtgcctgtgcctgc	13	12	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	71567695	71567695	G	A	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	silent	c.1032	p.S344	0.980	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	36	0	0	28	11	28.21	-	-	-	A	71567695	G	A	71567695	2	1	617	1	0	0	0	0	0	0	0	1	14855	1045	37	1		1	SMAP1	6	71567695	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	24890544	71567695	99547372	144	53626										
COL12A1	0	genome.wustl.edu	37	chr6	75851861	75851861	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgagggaagtgctggtctctGatctgtccacctctacctat	10	11	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	75851861	75851861	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.4844	p.S1615L	0.667	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	90	0	0	59	20	25.32	-	-	-	A	75851861	G	A	75851861	3	1	617	1	0	0	0	0	1	0	0	0	3699	1294	45	2	4507	2	COL12A1	6	75851861	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4284166	75851861	95263206	145	53627										
PRSS35	0	genome.wustl.edu	37	chr6	84233644	84233644	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtggcattctcatttcccctCagcatgttctaactgctgcc	7	14	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	84233644	84233644	C	T	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	nonsense	c.484	p.Q162*	0.005	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	45	0	0	51	7	12.07	-	-	-	T	84233644	C	T	84233644	4	4	617	1	0	0	0	0	0	1	0	0	12704	827	29	2	486	2	PRSS35	6	84233644	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8381783	84233644	86881423	146	53628										
MDN1	0	genome.wustl.edu	37	chr6	90366470	90366470	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccaactgggcaatgaaattCgattcatggccttctgcctg	10	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	90366470	90366470	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	silent	c.15234	p.S5078	0.373	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	80	0	0	75	11	12.79	-	-	-	G	90366470	C	G	90366470	2	3	617	1	0	0	0	0	0	0	0	1	9486	871	31	3		3	MDN1	6	90366470	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6132826	90366470	80748597	147	53629										
FAM26E	0	genome.wustl.edu	37	chr6	116832997	116832997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagtgcccctgcagcactgaGaatatgacctatgggctggt	12	10	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	116832997	116832997	G	C	SNP	FAM26E	ENST00000368599	human	ensembl	69_37n	1	known	missense	c.138	p.E46D	1.000	NULL	NULL	-	no_errors	FAM26E	HGNC	ENSG00000178033	52	0	0	73	9	10.98	-	-	-	C	116832997	G	C	116832997	3	2	617	1	0	0	0	0	1	0	0	0	5596	933	33	2	140	2	FAM26E	6	116832997	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	26466527	116832997	54282070	148	53630										
ROS1	0	genome.wustl.edu	37	chr6	117609722	117609722	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcaggccttcaggcttgccaGaagggcagtaagccacttgt	12	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	117609722	117609722	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.6977	p.S2326F	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	59	0	0	79	12	13.19	-	-	-	A	117609722	G	A	117609722	3	1	617	1	0	0	0	0	1	0	0	0	13617	942	33	2	70	2	ROS1	6	117609722	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	776725	117609722	53505345	149	53631										
L3MBTL3	0	genome.wustl.edu	37	chr6	130407294	130407294	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttttgtggcagaaacctcctCatggattccagaaaaaaatg	8	8	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	130407294	130407294	C	T	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.1417	p.H473Y	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	67	0	0	70	8	10.26	-	-	-	T	130407294	C	T	130407294	3	4	617	1	0	0	0	0	1	0	0	0	8647	826	29	2	1471	2	L3MBTL3	6	130407294	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	12797572	130407294	40707773	150	53632										
UTRN	0	genome.wustl.edu	37	chr6	144835944	144835944	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaaaaggtgtctcaacatatCaaaagtgccaaagtgagtaa	9	6	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	144835944	144835944	C	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.5232	p.I1744M	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	55	0	0	48	9	15.79	-	-	-	G	144835944	C	G	144835944	3	3	617	1	0	0	0	0	1	0	0	0	17200	816	29	2	5374	2	UTRN	6	144835944	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	14428650	144835944	26279123	151	53633										
UTRN	0	genome.wustl.edu	37	chr6	145160371	145160371	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tctcctcagcattctgcactGagctactcgcttgatccaga	7	14	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	145160371	145160371	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.10128	p.L3376	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	68	0	0	45	13	22.41	-	-	-	A	145160371	G	A	145160371	2	1	617	1	0	0	0	0	0	0	0	1	17200	1277	45	2		2	UTRN	6	145160371	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	324427	145160371	25954696	152	53634										
SHPRH	0	genome.wustl.edu	37	chr6	146256486	146256486	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgtagagatgctgaggattCttcttgcagtaaggccgata	12	7	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	146256486	146256486	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	silent	c.2661	p.K887	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	52	0	0	46	6	11.54	-	-	-	T	146256486	C	T	146256486	2	4	617	1	0	0	0	0	0	0	0	1	14380	912	32	2		2	SHPRH	6	146256486	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1096115	146256486	24858581	153	53635										
IGF2R	0	genome.wustl.edu	37	chr6	160445709	160445709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	actccgatccggacacttctCtattcatcaatgtttgtaga	6	11	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	160445709	160445709	C	G	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.619	p.L207V	0.998	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	91	0	0	71	18	20.22	-	-	-	G	160445709	C	G	160445709	3	3	617	1	0	0	0	0	1	0	0	0	7630	912	32	2	637	2	IGF2R	6	160445709	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	14189223	160445709	10669358	154	53636										
FRMD1	0	genome.wustl.edu	37	chr6	168468077	168468077	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tctttcttccaatcttttgaGaagtacttgctgagcttttg	7	8	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	6	168468077	168468077	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	69_37n	-1	known	silent	c.354	p.F118	0.998	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	45	0	0	43	8	15.38	-	-	-	A	168468077	G	A	168468077	2	1	617	1	0	0	0	0	0	0	0	1	6098	933	33	2		2	FRMD1	6	168468077	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8022368	168468077	2646990	155	53637										
MMD2	0	genome.wustl.edu	37	chr7	4959833	4959833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttcttccaggagatggtgtGaaacacagtggacaccacga	11	10	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	4959833	4959833	G	A	SNP	MMD2	ENST00000404774	human	ensembl	69_37n	-1	known	missense	c.259	p.H87Y	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297	24	0	0	8	6	42.86	-	-	-	A	4959833	G	A	4959833	3	1	617	1	0	0	0	0	1	0	0	0	9715	1290	45	2	573	2	MMD2	7	4959833	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		4959833	154178830	156	53638										
GLCCI1	0	genome.wustl.edu	37	chr7	8095167	8095167	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	catggcaaccatataacaatCagtcacactcaggtaggcta	7	11	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	8095167	8095167	C	T	SNP	GLCCI1	ENST00000438949	human	ensembl	69_37n	1	known	nonsense	c.31	p.Q11*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLCCI1	HGNC	ENSG00000106415	67	0	0	64	18	21.95	-	-	-	T	8095167	C	T	8095167	4	4	617	1	0	0	0	0	0	1	0	0	6483	816	29	2	815	2	GLCCI1	7	8095167	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3135334	8095167	151043496	157	53639										
ABCB5	0	genome.wustl.edu	37	chr7	20685389	20685389	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttattacagatggtcatctCattgaccagtaaggaattaa	7	6	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	20685389	20685389	C	T	SNP	ABCB5	ENST00000404938	human	ensembl	69_37n	1	putative	missense	c.689	p.S230L	0.998	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	45	0	0	42	10	19.23	-	-	-	T	20685389	C	T	20685389	3	4	617	1	0	0	0	0	1	0	0	0	44	838	29	2	715	2	ABCB5	7	20685389	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	12590222	20685389	138453274	158	53640										
DNAH11	0	genome.wustl.edu	37	chr7	21818683	21818683	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggccttcagacggagaaagtGagccgggaaaagaccatcgc	14	10	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	21818683	21818683	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	silent	c.9465	p.V3155	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	68	0	0	31	7	18.42	-	-	-	A	21818683	G	A	21818683	2	1	617	1	0	0	0	0	0	0	0	1	4635	1277	45	2		2	DNAH11	7	21818683	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1133294	21818683	137319980	159	53641										
C7orf31	0	genome.wustl.edu	37	chr7	25218893	25218893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgtcagctccttcaagctccCtgcaacagtagggcctgccg	10	15	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	25218893	25218893	C	G	SNP	C7orf31	ENST00000283905	human	ensembl	69_37n	-1	known	missense	c.35	p.R12T	0.931	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	57	0	0	57	14	19.72	-	-	-	G	25218893	C	G	25218893	3	3	617	1	0	0	0	0	1	0	0	0	2410	681	24	4	1773	4	C7orf31	7	25218893	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3400210	25218893	133919770	160	53642										
GLI3	0	genome.wustl.edu	37	chr7	42017206	42017206	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggcgcgatcagaggcatttGagaaagccttgttgcaacct	12	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	42017206	42017206	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.1763	p.S588L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	132	0	0	86	14	14	-	-	-	A	42017206	G	A	42017206	3	1	617	1	0	0	0	0	1	0	0	0	6491	1294	45	2	2995	2	GLI3	7	42017206	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	16798313	42017206	117121457	161	53643										
ZNF138	0	genome.wustl.edu	37	chr7	64276007	64276007	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctggaatatgaagagacatGagatggtggtagccaaacat	12	6	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	64276007	64276007	G	C	SNP	ZNF138	ENST00000359735	human	ensembl	69_37n	1	known	missense	c.13	p.E5Q	0.353	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF138	HGNC	ENSG00000197008	133	0	0	86	17	16.5	-	-	-	C	64276007	G	C	64276007	3	2	617	1	0	0	0	0	1	0	0	0	17823	1291	45	2	194	2	ZNF138	7	64276007	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	22258801	64276007	94862656	162	53644										
WBSCR28	0	genome.wustl.edu	37	chr7	73279648	73279648	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctggacagatctgtttttgtCatgtctgcacggcctgatgt	11	9	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	73279648	73279648	C	T	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	missense	c.398	p.S133L	0.002	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	97	0	0	66	10	13.16	-	-	-	T	73279648	C	T	73279648	3	4	617	1	0	0	0	0	1	0	0	0	17364	838	29	2	404	2	WBSCR28	7	73279648	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9003641	73279648	85859015	163	53645										
CCDC146	0	genome.wustl.edu	37	chr7	76903798	76903798	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atctgtgttttttttcaaaaGaaaattatatcagaaatgga	6	3	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	76903798	76903798	G	A	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	splice_site	c.1270-1	e10-1	1.000	-	-	-	no_errors	CCDC146	HGNC	ENSG00000135205	22	0	0	24	6	20	-	-	-	A	76903798	G	A	76903798	5	1	617	1	0	0	0	0	0	0	1	0	2805	956	33	2	1307	2	CCDC146	7	76903798	Splice_Site	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3624150	76903798	82234865	164	53646										
TRRAP	0	genome.wustl.edu	37	chr7	98488014	98488014	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaacatatcatccctcgattCcttacatttctccaagatgg	5	12	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	98488014	98488014	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	silent	c.207	p.F69	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	77	0	0	79	16	16.84	-	-	-	T	98488014	C	T	98488014	2	4	617	1	0	0	0	0	0	0	0	1	16697	854	30	2		2	TRRAP	7	98488014	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	21584216	98488014	60650649	165	53647										
MCM7	0	genome.wustl.edu	37	chr7	99694960	99694960	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atcaatgtatgacaggagctGagacttggccacaccaggat	11	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	99694960	99694960	G	A	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	nonsense	c.1165	p.Q389*	1.000	pfam_MCM_DNA-dep_ATPase,pfam_ATPase_dyneun-rel_AAA,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	74	0	0	52	6	10.34	-	-	-	A	99694960	G	A	99694960	4	1	617	1	0	0	0	0	0	1	0	0	9463	1299	45	2	1018	2	MCM7	7	99694960	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1206946	99694960	59443703	166	53648										
ZCWPW1	0	genome.wustl.edu	37	chr7	100014011	100014011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctggctggcctaacttagatGtccttatctcaggggcagct	11	11	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	100014011	100014011	G	A	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.548	p.T183I	0.006	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	85	0	0	98	12	10.91	-	-	-	A	100014011	G	A	100014011	3	1	617	1	0	0	0	0	1	0	0	0	17693	1377	48	4	1446	4	ZCWPW1	7	100014011	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	319051	100014011	59124652	167	53649										
PPP1R3A	0	genome.wustl.edu	37	chr7	113522199	113522199	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttgtcctcatgagaacaaatGattgttgggatataggtatc	10	5	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	113522199	113522199	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	silent	c.861	p.I287	0.063	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	110	0	0	90	21	18.75	-	-	-	A	113522199	G	A	113522199	2	1	617	1	0	0	0	0	0	0	0	1	12448	1280	45	2		2	PPP1R3A	7	113522199	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	13508188	113522199	45616464	168	53650										
CFTR	0	genome.wustl.edu	37	chr7	117171132	117171132	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttcatcacattggaatgcaGatgagaatagctatgtttag	9	6	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	117171132	117171132	G	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.453	p.Q151H	0.993	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	46	0	0	59	14	19.18	-	-	-	C	117171132	G	C	117171132	3	2	617	1	0	0	0	0	1	0	0	0	3323	933	33	2	467	2	CFTR	7	117171132	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3648933	117171132	41967531	169	53651										
IQUB	0	genome.wustl.edu	37	chr7	123109376	123109376	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agctctctggctctgatggtGaactgcgtatccatctcaat	9	11	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	123109376	123109376	G	A	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	silent	c.1473	p.F491	1.000	NULL	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	120	0	0	110	13	10.48	-	-	-	A	123109376	G	A	123109376	2	1	617	1	0	0	0	0	0	0	0	1	7874	1281	45	2		2	IQUB	7	123109376	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5938244	123109376	36029287	170	53652										
CHRM2	0	genome.wustl.edu	37	chr7	136699711	136699711	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtcctggtggctggatccctCagtttggtgaccattatcgg	13	10	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	136699711	136699711	C	T	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	silent	c.99	p.L33	1.000	prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	99	0	0	74	15	16.85	-	-	-	T	136699711	C	T	136699711	2	4	617	1	0	0	0	0	0	0	0	1	3406	813	29	2		2	CHRM2	7	136699711	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13590335	136699711	22438952	171	53653										
PTN	0	genome.wustl.edu	37	chr7	136936040	136936040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtgacagtcttctggcattCggcattgtgcagggctcgct	14	10	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	136936040	136936040	C	T	SNP	PTN	ENST00000348225	human	ensembl	69_37n	-1	known	missense	c.388	p.E130K	0.998	pfam_Midkine_heparin-bd_GF_C,superfamily_Midkine_heparin-bd_GF_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	pfam_Midkine_heparin-bd_GF_C,pfam_Midkine_heparin-bd_GF_N,superfamily_Midkine_heparin-bd_GF_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	-	no_errors	PTN	HGNC	ENSG00000105894	131	1	0.75	135	31	18.67	-	-	-	T	136936040	C	T	136936040	3	4	617	1	0	0	0	0	1	0	0	0	12849	893	31	1	126	1	PTN	7	136936040	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	236329	136936040	22202623	172	53654										
OR6B1	0	genome.wustl.edu	37	chr7	143701593	143701593	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcatctcctgcctcagcttCtgtggtcccaatgtcatcaa	6	14	6	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	143701593	143701593	C	A	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	missense	c.504	p.F168L	0.735	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	34	0	0	23	15	39.47	-	-	-	A	143701593	C	A	143701593	3	1	617	1	0	0	0	0	1	0	0	0	11260	912	32	2	506	2	OR6B1	7	143701593	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6765553	143701593	15437070	173	53655										
OR6B1	0	genome.wustl.edu	37	chr7	143701938	143701938	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccattgtcactccttctctCaaccctttcatttattgcct	3	15	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	143701938	143701938	C	T	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	silent	c.849	p.L283	0.969	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	23	0	0	17	7	29.17	-	-	-	T	143701938	C	T	143701938	2	4	617	1	0	0	0	0	0	0	0	1	11260	813	29	2		2	OR6B1	7	143701938	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	345	143701938	15436725	174	53656										
ABCF2	0	genome.wustl.edu	37	chr7	150923404	150923404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aattcacctgtggtctctctGccattggcctcattcttctc	6	14	6	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	7	150923404	150923404	G	A	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	silent	c.141	p.G47	0.241	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	139	0	0	138	30	17.86	-	-	-	A	150923404	G	A	150923404	2	1	617	1	0	0	0	0	0	0	0	1	66	1306	46	4		4	ABCF2	7	150923404	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7221466	150923404	8215259	175	53657										
MYOM2	0	genome.wustl.edu	37	chr8	2064059	2064059	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttcaaaggaaagaatttctCaggaaacaaggtgagtttcc	9	6	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	2064059	2064059	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	silent	c.3375	p.L1125	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	49	0	0	45	11	19.64	-	-	-	G	2064059	C	G	2064059	2	3	617	1	0	0	0	0	0	0	0	1	10164	813	29	2		2	MYOM2	8	2064059	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		2064059	144299963	176	53658										
MCPH1	0	genome.wustl.edu	37	chr8	6302903	6302903	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaagccttgaagaaatgaaaGaagcggttggtctgaaaagc	13	5	1	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	6302903	6302903	G	A	SNP	MCPH1	ENST00000344683	human	ensembl	69_37n	1	known	missense	c.1660	p.E554K	0.002	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	MCPH1	HGNC	ENSG00000147316	26	0	0	17	5	22.73	-	-	-	A	6302903	G	A	6302903	3	1	617	1	0	0	0	0	1	0	0	0	9469	943	33	2	1690	2	MCPH1	8	6302903	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4238844	6302903	140061119	177	53659										
FGF17	0	genome.wustl.edu	37	chr8	21903693	21903693	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggcgccatgaccgaccagctGagcaggcggcagatccgcga	15	14	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	21903693	21903693	G	C	SNP	FGF17	ENST00000359441	human	ensembl	69_37n	1	known	silent	c.141	p.L47	1.000	superfamily_Cytokine_IL1-like	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF17	HGNC	ENSG00000158815	21	0	0	22	5	18.52	-	-	-	C	21903693	G	C	21903693	2	2	617	1	0	0	0	0	0	0	0	1	5891	1277	45	2		2	FGF17	8	21903693	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15600790	21903693	124460329	178	53660										
ADAM28	0	genome.wustl.edu	37	chr8	24187543	24187543	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttgcagggacaatggcacatGaaatgggccacaactttgga	12	8	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	24187543	24187543	G	C	SNP	ADAM28	ENST00000265769	human	ensembl	69_37n	1	known	missense	c.1018	p.E340Q	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	47	0	0	61	14	18.42	-	-	-	C	24187543	G	C	24187543	3	2	617	1	0	0	0	0	1	0	0	0	246	1291	45	2	1060	2	ADAM28	8	24187543	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2283850	24187543	122176479	179	53661										
EBF2	0	genome.wustl.edu	37	chr8	25718703	25718703	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attcctggggacgctgtagaGagcttcagcaatgtctgcgg	14	9	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	25718703	25718703	G	C	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.1204	p.L402V	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	89	0	0	70	9	11.25	-	-	-	C	25718703	G	C	25718703	3	2	617	1	0	0	0	0	1	0	0	0	4916	942	33	2	539	2	EBF2	8	25718703	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1531160	25718703	120645319	180	53662										
ST18	0	genome.wustl.edu	37	chr8	53084928	53084928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atgaatcagaaagcactcgtCtgcttcatcgctctctgctt	7	12	4	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	53084928	53084928	C	G	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.493	p.D165H	0.149	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	45	0	0	36	17	32.08	-	-	-	G	53084928	C	G	53084928	3	3	617	1	0	0	0	0	1	0	0	0	15303	913	32	2	2718	2	ST18	8	53084928	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	27366225	53084928	93279094	181	53663										
CYP7B1	0	genome.wustl.edu	37	chr8	65528639	65528639	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttctgcatcatgctttccaaGagtatgtccaaagatttgcc	7	10	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	65528639	65528639	G	C	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	silent	c.459	p.L153	0.049	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	36	0	0	21	11	34.38	-	-	-	C	65528639	G	C	65528639	2	2	617	1	0	0	0	0	0	0	0	1	4228	929	33	2		2	CYP7B1	8	65528639	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12443711	65528639	80835383	182	53664										
CDH17	0	genome.wustl.edu	37	chr8	95189831	95189831	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttacctggagattgtgagtaGatcttgtttccctgtccaag	10	8	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	95189831	95189831	G	C	SNP	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	missense	c.269	p.S90C	0.218	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	103	0	0	70	14	16.67	-	-	-	C	95189831	G	C	95189831	3	2	617	1	0	0	0	0	1	0	0	0	3131	942	33	2	2289	2	CDH17	8	95189831	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	29661192	95189831	51174191	183	53665										
MTDH	0	genome.wustl.edu	37	chr8	98736890	98736890	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agaagaaaaaagccagacgaGaaacgtgaaattttttttcc	8	6	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	98736890	98736890	G	A	SNP	MTDH	ENST00000336273	human	ensembl	69_37n	1	known	missense	c.1741	p.E581K	1.000	NULL	NULL	-	no_errors	MTDH	HGNC	ENSG00000147649	106	0	0	59	18	23.38	-	-	-	A	98736890	G	A	98736890	3	1	617	1	0	0	0	0	1	0	0	0	9989	943	33	2	1787	2	MTDH	8	98736890	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3547059	98736890	47627132	184	53666										
KCNS2	0	genome.wustl.edu	37	chr8	99440631	99440631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gggacgagcagagtgaccagGagagcaccacgtcttccttc	13	12	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	99440631	99440631	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	69_37n	1	known	missense	c.424	p.E142K	1.000	NULL	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486	46	0	0	38	6	13.64	-	-	-	A	99440631	G	A	99440631	3	1	617	1	0	0	0	0	1	0	0	0	8143	1175	41	2	426	2	KCNS2	8	99440631	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	703741	99440631	46923391	185	53667										
UBR5	0	genome.wustl.edu	37	chr8	103284880	103284880	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accactgccctctcctggctCatccttaaatgtgactttta	5	14	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	103284880	103284880	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.6850	p.E2284K	1.000	superfamily_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	54	0	0	39	10	20.41	-	-	-	T	103284880	C	T	103284880	3	4	617	1	0	0	0	0	1	0	0	0	17002	835	29	2	1597	2	UBR5	8	103284880	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3844249	103284880	43079142	186	53668										
RIMS2	0	genome.wustl.edu	37	chr8	104709373	104709373	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaagaagatgggagaagaatCacagcaacagcaagaacaga	11	6	1	6			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	104709373	104709373	C	T	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.236	p.S79L	1.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	88	0	0	30	17	36.17	-	-	-	T	104709373	C	T	104709373	3	4	617	1	0	0	0	0	1	0	0	0	13454	838	29	2	242	2	RIMS2	8	104709373	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1424493	104709373	41654649	187	53669										
PKHD1L1	0	genome.wustl.edu	37	chr8	110461570	110461570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttatttgtcttcactagggaGctttggtgggggtcaaacca	12	7	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	110461570	110461570	G	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.6029	p.S2010I	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	59	0	0	55	11	16.67	-	-	-	T	110461570	G	T	110461570	3	4	617	1	0	0	0	0	1	0	0	0	12046	971	34	4	6187	4	PKHD1L1	8	110461570	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5752197	110461570	35902452	188	53670										
PKHD1L1	0	genome.wustl.edu	37	chr8	110477340	110477340	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttgggagtgacatccatctCtggagtttgtaatgacagat	11	6	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	110477340	110477340	C	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.8279	p.S2760C	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	53	0	0	33	11	25	-	-	-	G	110477340	C	G	110477340	3	3	617	1	0	0	0	0	1	0	0	0	12046	913	32	2	8473	2	PKHD1L1	8	110477340	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	15770	110477340	35886682	189	53671										
ASAP1	0	genome.wustl.edu	37	chr8	131179788	131179788	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgtaaaccacttacttctttCtgatccagttgaagagagga	8	8	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	131179788	131179788	C	T	SNP	ASAP1	ENST00000524124	human	ensembl	69_37n	-1	novel	missense	c.355	p.E119K	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ASAP1	HGNC	ENSG00000153317	87	0	0	80	16	16.67	-	-	-	T	131179788	C	T	131179788	3	4	617	1	0	0	0	0	1	0	0	0	1014	912	32	2	2566	2	ASAP1	8	131179788	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	20702448	131179788	15184234	190	53672										
KCNQ3	0	genome.wustl.edu	37	chr8	133142088	133142088	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tagttgcagatgatggttttCaaatcggaatacctgttgtc	10	6	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	133142088	133142088	C	T	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	silent	c.2040	p.L680	0.999	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	27	0	0	20	7	25.93	-	-	-	T	133142088	C	T	133142088	2	4	617	1	0	0	0	0	0	0	0	1	8138	825	29	2		2	KCNQ3	8	133142088	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1962300	133142088	13221934	191	53673										
CPSF1	0	genome.wustl.edu	37	chr8	145619108	145619108	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccacactcaccaaaccacgtGatgtgcttattctcccacac	4	17	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	145619108	145619108	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	silent	c.4005	p.I1335	1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	54	0	0	69	8	10.39	-	-	-	A	145619108	G	A	145619108	2	1	617	1	0	0	0	0	0	0	0	1	3854	1280	45	2		2	CPSF1	8	145619108	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12477020	145619108	744914	192	53674										
CYHR1	0	genome.wustl.edu	37	chr8	145677767	145677767	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tagccaatcttctcgaagctGagcaggctgaagatgctgtt	11	9	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	8	145677767	145677767	G	C	SNP	CYHR1	ENST00000438911	human	ensembl	69_37n	-1	known	silent	c.672	p.L224	1.000	NULL	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	CYHR1	HGNC	ENSG00000187954	58	0	0	33	5	13.16	-	-	-	C	145677767	G	C	145677767	2	2	617	1	0	0	0	0	0	0	0	1	4171	1277	45	2		2	CYHR1	8	145677767	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	58659	145677767	686255	193	53675										
GLDC	0	genome.wustl.edu	37	chr9	6644674	6644674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gttggcagggaccgtcttctCgatcaattcatcaatgctct	9	11	6	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	6644674	6644674	C	T	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.274	p.E92K	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	49	0	0	39	8	17.02	-	-	-	T	6644674	C	T	6644674	3	4	617	1	0	0	0	0	1	0	0	0	6485	893	31	1	2884	1	GLDC	9	6644674	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		6644674	134568757	194	53676										
LINGO2	0	genome.wustl.edu	37	chr9	27950141	27950141	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtgagctgctccaagctaaGaagcccactgaatgccctgt	11	12	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	27950141	27950141	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.529	p.L177F	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	25	0	0	24	5	17.24	-	-	-	A	27950141	G	A	27950141	3	1	617	1	0	0	0	0	1	0	0	0	8871	942	33	2	1295	2	LINGO2	9	27950141	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	21305467	27950141	113263290	195	53677										
DNAI1	0	genome.wustl.edu	37	chr9	34493197	34493197	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcacccttgcctagtgggaGatctatgatgcctatgtaga	10	10	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	34493197	34493197	G	A	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	silent	c.687	p.E229	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	36	0	0	30	7	18.92	-	-	-	A	34493197	G	A	34493197	2	1	617	1	0	0	0	0	0	0	0	1	4644	933	33	2		2	DNAI1	9	34493197	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6543056	34493197	106720234	196	53678										
TJP2	0	genome.wustl.edu	37	chr9	71863199	71863199	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggtgttttccttgcactctCgtggacagctgtgtgttcag	12	9	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	71863199	71863199	C	T	SNP	TJP2	ENST00000265384	human	ensembl	69_37n	1	known	missense	c.2939	p.S980L	0.001	NULL	pfam_PDZ,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculdens,prints_ZonOcculS2	-	no_errors	TJP2	HGNC	ENSG00000119139	61	0	0	47	10	17.54	-	-	-	T	71863199	C	T	71863199	3	4	617	1	0	0	0	0	1	0	0	0	16025	893	31	1	3170	1	TJP2	9	71863199	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	37370002	71863199	69350232	197	53679										
C9orf41	0	genome.wustl.edu	37	chr9	77599900	77599900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tatggaaagttcatttgccaGattttcaaagtggtacagca	9	6	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	77599900	77599900	G	C	SNP	C9orf41	ENST00000376834	human	ensembl	69_37n	-1	known	missense	c.1051	p.L351V	0.998	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	101	0	0	57	9	13.64	-	-	-	C	77599900	G	C	77599900	3	2	617	1	0	0	0	0	1	0	0	0	2507	933	33	2	186	2	C9orf41	9	77599900	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5736701	77599900	63613531	198	53680										
PRUNE2	0	genome.wustl.edu	37	chr9	79441592	79441592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggatagaaagaatttcctCctgcttctctgagatcttct	7	10	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	79441592	79441592	C	T	SNP	PRUNE2	ENST00000376718	human	ensembl	69_37n	-1	novel	missense	c.565	p.E189K	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	52	0	0	30	8	20.51	-	-	-	T	79441592	C	T	79441592	3	4	617	1	0	0	0	0	1	0	0	0	12721	864	30	2	8761	2	PRUNE2	9	79441592	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1841692	79441592	61771839	199	53681										
VPS13A	0	genome.wustl.edu	37	chr9	79865048	79865048	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cgttctgaattaccagatgtGaaacaaggtgaggccaatct	10	8	2	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	79865048	79865048	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	silent	c.2073	p.V691	0.428	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	68	0	0	47	18	27.69	-	-	-	A	79865048	G	A	79865048	2	1	617	1	0	0	0	0	0	0	0	1	17286	1277	45	2		2	VPS13A	9	79865048	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	423456	79865048	61348383	200	53682										
SEMA4D	0	genome.wustl.edu	37	chr9	91994113	91994113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccggtgggcgcaggcttggGaggaagggtgatggccccgg	22	9	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	91994113	91994113	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	missense	c.2095	p.P699S	0.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	70	0	0	54	14	20.59	-	-	-	A	91994113	G	A	91994113	3	1	617	1	0	0	0	0	1	0	0	0	14122	1174	41	2	1067	2	SEMA4D	9	91994113	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12129065	91994113	49219318	201	53683										
OR13C4	0	genome.wustl.edu	37	chr9	107288965	107288965	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	taagatctcgcataagaaatGattaataatattgttcccac	5	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	107288965	107288965	G	A	SNP	OR13C4	ENST00000277216	human	ensembl	69_37n	-1	known	missense	c.526	p.H176Y	0.015	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C4	HGNC	ENSG00000148136	55	0	0	24	10	29.41	-	-	-	A	107288965	G	A	107288965	3	1	617	1	0	0	0	0	1	0	0	0	11009	1290	45	2	432	2	OR13C4	9	107288965	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15294852	107288965	33924466	202	53684										
GAPVD1	0	genome.wustl.edu	37	chr9	128099860	128099860	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atccccgagtaaggactcctCaagaggagaggtatgggaca	13	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	128099860	128099860	C	G	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	nonsense	c.2948	p.S983*	0.960	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	37	0	0	38	6	13.64	-	-	-	G	128099860	C	G	128099860	4	3	617	1	0	0	0	0	0	1	0	0	6289	838	29	2	3006	2	GAPVD1	9	128099860	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	20810895	128099860	13113571	203	53685										
GLE1	0	genome.wustl.edu	37	chr9	131271192	131271192	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tatgtctcttcccaagctatCttcttattctggatgggtgg	9	9	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	131271192	131271192	C	T	SNP	GLE1	ENST00000309971	human	ensembl	69_37n	1	known	missense	c.137	p.S46F	0.637	NULL	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392	88	0	0	85	15	15	-	-	-	T	131271192	C	T	131271192	3	4	617	1	0	0	0	0	1	0	0	0	6487	913	32	2	143	2	GLE1	9	131271192	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3171332	131271192	9942239	204	53686										
FIBCD1	0	genome.wustl.edu	37	chr9	133779645	133779645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaaggcggcacagttgttctCtgaatggtcgctgtcacggt	14	9	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	133779645	133779645	C	G	SNP	FIBCD1	ENST00000372338	human	ensembl	69_37n	-1	known	missense	c.1192	p.E398Q	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FIBCD1	HGNC	ENSG00000130720	43	0	0	21	11	34.38	-	-	-	G	133779645	C	G	133779645	3	3	617	1	0	0	0	0	1	0	0	0	5930	922	32	2	197	2	FIBCD1	9	133779645	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2508453	133779645	7433786	205	53687										
COL5A1	0	genome.wustl.edu	37	chr9	137650106	137650106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagggtgaccggggtttcgaCggcctggctgggttgccagg	19	10	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	137650106	137650106	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	silent	c.1899	p.D633	0.837	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	79	0	0	45	6	11.76	-	-	-	T	137650106	C	T	137650106	2	4	617	1	0	0	0	0	0	0	0	1	3726	535	19	1		1	COL5A1	9	137650106	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3870461	137650106	3563325	206	53688										
PAEP	0	genome.wustl.edu	37	chr9	138454685	138454685	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gggagaacaacagctgtgttGagaagaaggtccttggagag	16	5	0	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	138454685	138454685	G	C	SNP	PAEP	ENST00000277508	human	ensembl	69_37n	1	known	missense	c.256	p.E86Q	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Blactoglobulin,prints_Lipocalin	-	no_errors	PAEP	HGNC	ENSG00000122133	59	0	0	33	9	21.43	-	-	-	C	138454685	G	C	138454685	3	2	617	1	0	0	0	0	1	0	0	0	11455	1291	45	2	266	2	PAEP	9	138454685	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	804579	138454685	2758746	207	53689										
MAMDC4	0	genome.wustl.edu	37	chr9	139751636	139751636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gggactctgcgcctagccatGagacgggaaggggaggagac	18	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	9	139751636	139751636	G	C	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	1	known	missense	c.2229	p.M743I	0.018	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	16	0	0	15	4	21.05	-	-	-	C	139751636	G	C	139751636	3	2	617	1	0	0	0	0	1	0	0	0	9275	1290	45	2	2058	2	MAMDC4	9	139751636	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1296951	139751636	1461795	208	53690										
GATA3	0	genome.wustl.edu	37	chr10	8105964	8105964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttttgtttccagaaggcaggGagtgtgtgaactgtggggca	16	5	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	8105964	8105964	G	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.787	p.E263K	1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	69	0	0	76	12	13.64	-	-	-	A	8105964	G	A	8105964	3	1	617	1	0	0	0	0	1	0	0	0	6305	1175	41	2	797	2	GATA3	10	8105964	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		8105964	127428783	209	53691										
GATA3	0	genome.wustl.edu	37	chr10	8106058	8106058	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgcgggctctatcacaaaaTgaacggacagaaccggcccc	10	14	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	8106058	8106058	T	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.881	p.M294K	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	55	0	0	56	10	15.15	-	-	-	A	8106058	T	A	8106058	3	1	617	1	0	0	0	0	1	0	0	0	6305	1464	51	5	891	5	GATA3	10	8106058	Missense_Mutation	SNP	T	TCGA-BH-A2L8-01A-11D-A18P-09	94	8106058	127428689	210	53692										
PTER	0	genome.wustl.edu	37	chr10	16547122	16547122	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcattaccaactcggcccaGatattgacatgcctgatgat	7	11	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	16547122	16547122	G	C	SNP	PTER	ENST00000298942	human	ensembl	69_37n	1	known	missense	c.802	p.D268H	0.982	pfam_Aryldialkylphosphatase	pfam_Aryldialkylphosphatase,pfam_TatD_superfamily	-	no_errors	PTER	HGNC	ENSG00000165983	93	0	0	70	16	18.6	-	-	-	C	16547122	G	C	16547122	3	2	617	1	0	0	0	0	1	0	0	0	12819	942	33	2	812	2	PTER	10	16547122	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8441064	16547122	118987625	211	53693										
ARL5B	0	genome.wustl.edu	37	chr10	18962960	18962960	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttgcaaataaacaggatatGaaagggtgtatgacagcagc	11	5	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	18962960	18962960	G	A	SNP	ARL5B	ENST00000377275	human	ensembl	69_37n	1	known	missense	c.387	p.M129I	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5B	HGNC	ENSG00000165997	56	0	0	46	14	23.33	-	-	-	A	18962960	G	A	18962960	3	1	617	1	0	0	0	0	1	0	0	0	944	1290	45	2	405	2	ARL5B	10	18962960	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2415838	18962960	116571787	212	53694										
GJD4	0	genome.wustl.edu	37	chr10	35896912	35896912	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accctgctggaggcagccttCggggccttgcactactttct	11	14	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	35896912	35896912	C	T	SNP	GJD4	ENST00000321660	human	ensembl	69_37n	1	known	silent	c.471	p.F157	0.043	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD4	HGNC	ENSG00000177291	11	0	0	7	4	36.36	-	-	-	T	35896912	C	T	35896912	2	4	617	1	0	0	0	0	0	0	0	1	6471	883	31	1		1	GJD4	10	35896912	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	16933952	35896912	99637835	213	53695										
FAM13C	0	genome.wustl.edu	37	chr10	61029684	61029684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaactgctgagtgctgggtgGagatggggctgactcggggt	19	6	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	61029684	61029684	G	A	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.778	p.P260S	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	62	0	0	50	8	13.79	-	-	-	A	61029684	G	A	61029684	3	1	617	1	0	0	0	0	1	0	0	0	5494	1174	41	2	1011	2	FAM13C	10	61029684	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	25132772	61029684	74505063	214	53696										
TET1	0	genome.wustl.edu	37	chr10	70450998	70450998	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaccaccagccctccttcctCacctctcctcaagaccttgc	3	21	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	70450998	70450998	C	T	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.5838	p.L1946	0.033	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	48	0	0	29	7	19.44	-	-	-	T	70450998	C	T	70450998	2	4	617	1	0	0	0	0	0	0	0	1	15864	813	29	2		2	TET1	10	70450998	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9421314	70450998	65083749	215	53697										
SGPL1	0	genome.wustl.edu	37	chr10	72604392	72604392	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atgagtttgtcttccagccaGagagtaagtatgctgtctcc	10	9	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	72604392	72604392	G	A	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	1	known	missense	c.190	p.E64K	0.998	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	66	0	0	56	14	20	-	-	-	A	72604392	G	A	72604392	3	1	617	1	0	0	0	0	1	0	0	0	14306	943	33	2	196	2	SGPL1	10	72604392	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2153394	72604392	62930355	216	53698										
AP3M1	0	genome.wustl.edu	37	chr10	75898029	75898029	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcaacatcagcagctttctCttgagcttcaaagaaataat	5	9	4	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	75898029	75898029	C	G	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.109	p.E37Q	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	54	0	0	47	11	18.97	-	-	-	G	75898029	C	G	75898029	3	3	617	1	0	0	0	0	1	0	0	0	748	922	32	2	1179	2	AP3M1	10	75898029	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3293637	75898029	59636718	217	53699										
ATAD1	0	genome.wustl.edu	37	chr10	89574223	89574223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagcttctactttttgctttCtggttggatcaattgcatct	8	8	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	89574223	89574223	C	T	SNP	ATAD1	ENST00000308448	human	ensembl	69_37n	-1	known	missense	c.134	p.R45K	1.000	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	ATAD1	HGNC	ENSG00000138138	82	0	0	91	40	30.3	-	-	-	T	89574223	C	T	89574223	3	4	617	1	0	0	0	0	1	0	0	0	1074	913	32	2	987	2	ATAD1	10	89574223	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13676194	89574223	45960524	218	53700										
PTEN	0	genome.wustl.edu	37	chr10	89720709	89720709	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accaggaccagaggaaacctCagaaaaagtagaaaatggaa	10	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	89720709	89720709	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.860	p.S287*	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	60	0	0	47	23	32.86	-	-	-	G	89720709	C	G	89720709	4	3	617	1	0	0	0	0	0	1	0	0	12818	838	29	2	890	2	PTEN	10	89720709	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	146486	89720709	45814038	219	53701										
RPP30	0	genome.wustl.edu	37	chr10	92660382	92660382	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtgaagaaacctcggccatcAgaaggagatgaagattgtct	12	7	2	6			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	92660382	92660382	A	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	1	known	silent	c.753	p.S251	0.852	NULL	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	73	0	0	35	15	30	-	-	-	T	92660382	A	T	92660382	2	4	617	1	0	0	0	0	0	0	0	1	13698	175	7	5		5	RPP30	10	92660382	Silent	SNP	A	TCGA-BH-A2L8-01A-11D-A18P-09	2939673	92660382	42874365	220	53702										
TCTN3	0	genome.wustl.edu	37	chr10	97452730	97452730	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cattagaatccatgaaaactCttgaaggaaacggggaatta	9	6	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	97452730	97452730	C	G	SNP	TCTN3	ENST00000371217	human	ensembl	69_37n	-1	known	missense	c.500	p.R167T	0.998	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977	42	0	0	45	9	16.67	-	-	-	G	97452730	C	G	97452730	3	3	617	1	0	0	0	0	1	0	0	0	15819	913	32	2	1425	2	TCTN3	10	97452730	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4792348	97452730	38082017	221	53703										
OPALIN	0	genome.wustl.edu	37	chr10	98109475	98109475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtaatcacctccatggcctCaatgctgcttcttcttcggt	7	13	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	98109475	98109475	C	T	SNP	OPALIN	ENST00000371172	human	ensembl	69_37n	-1	known	missense	c.181	p.E61K	0.004	NULL	NULL	-	no_errors	OPALIN	HGNC	ENSG00000197430	53	0	0	37	8	17.78	-	-	-	T	98109475	C	T	98109475	3	4	617	1	0	0	0	0	1	0	0	0	10946	835	29	2	256	2	OPALIN	10	98109475	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	656745	98109475	37425272	222	53704										
CHUK	0	genome.wustl.edu	37	chr10	101985685	101985685	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaggaatacacttacttcttCataatctggatttcatggca	6	8	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	101985685	101985685	C	T	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.195	p.M65I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	127	0	0	93	16	14.68	-	-	-	T	101985685	C	T	101985685	3	4	617	1	0	0	0	0	1	0	0	0	3445	826	29	2	2122	2	CHUK	10	101985685	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3876210	101985685	33549062	223	53705										
FAM178A	0	genome.wustl.edu	37	chr10	102676867	102676867	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attccagttgtcactagcttCttactgcagagaacgagaac	8	10	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	102676867	102676867	C	T	SNP	FAM178A	ENST00000370269	human	ensembl	69_37n	1	known	missense	c.725	p.S242F	0.996	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	33	0	0	19	5	20.83	-	-	-	T	102676867	C	T	102676867	3	4	617	1	0	0	0	0	1	0	0	0	5543	913	32	2	735	2	FAM178A	10	102676867	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	691182	102676867	32857880	224	53706										
COL17A1	0	genome.wustl.edu	37	chr10	105793003	105793003	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggatgcccttactttggaaGaagtccatgaggtccgcagt	12	9	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	105793003	105793003	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	silent	c.4287	p.F1429	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	63	0	0	41	12	22.64	-	-	-	A	105793003	G	A	105793003	2	1	617	1	0	0	0	0	0	0	0	1	3704	933	33	2		2	COL17A1	10	105793003	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3116136	105793003	29741744	225	53707										
COL17A1	0	genome.wustl.edu	37	chr10	105836095	105836095	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtaacgtgagttttcctttCaaaggttgagcctggggagt	14	6	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	105836095	105836095	C	G	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	87	0	0	67	13	16.25	-	-	-	G	105836095	C	G	105836095	3	3	617	1	0	0	0	0	1	0	0	0	3704	835	29	2	4406	2	COL17A1	10	105836095	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	43092	105836095	29698652	226	53708										
SMC3	0	genome.wustl.edu	37	chr10	112364018	112364018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attgatgtgatcacagcagaGatggccaaagactttgtaga	11	6	1	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	112364018	112364018	G	C	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.3612	p.E1204D	1.000	NULL	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	72	0	0	67	12	15.19	-	-	-	C	112364018	G	C	112364018	3	2	617	1	0	0	0	0	1	0	0	0	14873	933	33	2	3726	2	SMC3	10	112364018	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6527923	112364018	23170729	227	53709										
NHLRC2	0	genome.wustl.edu	37	chr10	115639357	115639357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caaccctggaagaaaagatgGaatattttcagaatcaactt	7	7	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	115639357	115639357	G	A	SNP	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	missense	c.812	p.G271E	1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	29	0	0	25	6	19.35	-	-	-	A	115639357	G	A	115639357	3	1	617	1	0	0	0	0	1	0	0	0	10478	1174	41	2	826	2	NHLRC2	10	115639357	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3275339	115639357	19895390	228	53710										
PNLIP	0	genome.wustl.edu	37	chr10	118306857	118306857	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cttcagtgatgactccccatGgtcaggaattacggaaagac	10	10	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	10	118306857	118306857	G	T	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	missense	c.98	p.W33L	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	38	0	0	19	4	17.39	-	-	-	T	118306857	G	T	118306857	3	4	617	1	0	0	0	0	1	0	0	0	12223	1357	47	4	104	4	PNLIP	10	118306857	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2667500	118306857	17227890	229	53711										
LSP1	0	genome.wustl.edu	37	chr11	1905529	1905529	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gctcatcgacaggaccgagtCcctaaaccgctccatagaga	9	14	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	1905529	1905529	C	A	SNP	LSP1	ENST00000311604	human	ensembl	69_37n	1	known	missense	c.611	p.S204Y	1.000	pfam_Caldesmon_LSP,prints_Lymphspecific	pfam_Caldesmon_LSP,prints_Lymphspecific	-	no_errors	LSP1	HGNC	ENSG00000130592	76	0	0	56	10	15.15	-	-	-	A	1905529	C	A	1905529	3	1	617	1	0	0	0	0	1	0	0	0	9129	855	30	2	633	2	LSP1	11	1905529	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		1905529	133100987	230	53712										
PGAP2	0	genome.wustl.edu	37	chr11	3845314	3845314	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acttcggcctcaatgtcgtgGagaacctcgcgttgctagtg	12	11	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	3845314	3845314	G	A	SNP	PGAP2	ENST00000459679	human	ensembl	69_37n	1	putative	nonsense	c.459	p.W153*	0.979	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PGAP2	HGNC	ENSG00000148985	53	0	0	57	14	19.72	-	-	-	A	3845314	G	A	3845314	4	1	617	1	0	0	0	0	0	1	0	0	11852	1175	41	2	739	2	PGAP2	11	3845314	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1939785	3845314	131161202	231	53713										
OR51T1	0	genome.wustl.edu	37	chr11	4903218	4903218	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atgtgctcatgtctggatctCcattccagtctgctgtctct	8	12	5	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	4903218	4903218	C	G	SNP	OR51T1	ENST00000380378	human	ensembl	69_37n	1	known	missense	c.170	p.S57C	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900	90	0	0	87	15	14.71	-	-	-	G	4903218	C	G	4903218	3	3	617	1	0	0	0	0	1	0	0	0	11179	855	30	2	172	2	OR51T1	11	4903218	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1057904	4903218	130103298	232	53714										
OR56B1	0	genome.wustl.edu	37	chr11	5757883	5757883	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctggcactactgtatctctCagcacttgctgcaaacaccc	6	16	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	5757883	5757883	C	G	SNP	OR56B1	ENST00000317121	human	ensembl	69_37n	1	known	nonsense	c.137	p.S46*	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56B1	HGNC	ENSG00000181023	121	0	0	110	27	19.71	-	-	-	G	5757883	C	G	5757883	4	3	617	1	0	0	0	0	0	1	0	0	11210	838	29	2	139	2	OR56B1	11	5757883	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	854665	5757883	129248633	233	53715										
PRMT3	0	genome.wustl.edu	37	chr11	20414539	20414539	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tagaagatgaccttttacttCaatttggtaagatgaacata	7	5	1	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	20414539	20414539	C	T	SNP	PRMT3	ENST00000331079	human	ensembl	69_37n	1	known	nonsense	c.394	p.Q132*	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238	55	0	0	64	9	12.33	-	-	-	T	20414539	C	T	20414539	4	4	617	1	0	0	0	0	0	1	0	0	12619	827	29	2	412	2	PRMT3	11	20414539	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	14656656	20414539	114591977	234	53716										
WT1	0	genome.wustl.edu	37	chr11	32413552	32413552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgagtcctggtgtgggtcttCaggtggtcggaccgggagaa	18	7	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	32413552	32413552	C	T	SNP	WT1	ENST00000527882	human	ensembl	69_37n	-1	novel	missense	c.379	p.E127K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WT1	HGNC	ENSG00000184937	60	0	0	52	7	11.86	-	-	-	T	32413552	C	T	32413552	3	4	617	1	0	0	0	0	1	0	0	0	17505	813	29	2	163	2	WT1	11	32413552	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11999013	32413552	102592964	235	53717										
HARBI1	0	genome.wustl.edu	37	chr11	46625236	46625236	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgctccagggagatgttgtgGaggacacaacaggccaagat	14	8	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	46625236	46625236	G	T	SNP	HARBI1	ENST00000326737	human	ensembl	69_37n	-1	known	silent	c.894	p.L298	1.000	pfam_HARBI1_nuclease_put	pfam_HARBI1_nuclease_put	-	no_errors	HARBI1	HGNC	ENSG00000180423	70	0	0	44	14	24.14	-	-	-	T	46625236	G	T	46625236	2	4	617	1	0	0	0	0	0	0	0	1	7009	1161	41	2		2	HARBI1	11	46625236	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	14211684	46625236	88381280	236	53718										
OR5J2	0	genome.wustl.edu	37	chr11	55945014	55945014	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtgaaaagggccatagaaatGaaacatttcctctgttaatt	8	6	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	55945014	55945014	G	C	SNP	OR5J2	ENST00000312298	human	ensembl	69_37n	1	known	missense	c.921	p.M307I	0.014	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	42	0	0	27	10	27.03	-	-	-	C	55945014	G	C	55945014	3	2	617	1	0	0	0	0	1	0	0	0	11238	1290	45	2	923	2	OR5J2	11	55945014	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	9319778	55945014	79061502	237	53719										
APLNR	0	genome.wustl.edu	37	chr11	57004167	57004167	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acgaagatgaggtagctgctGagcttgcagaagaaggtccc	14	8	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	57004167	57004167	G	C	SNP	APLNR	ENST00000257254	human	ensembl	69_37n	-1	known	silent	c.312	p.L104	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_APJ_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	APLNR	HGNC	ENSG00000134817	20	0	0	11	6	35.29	-	-	-	C	57004167	G	C	57004167	2	2	617	1	0	0	0	0	0	0	0	1	779	1277	45	2		2	APLNR	11	57004167	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1059153	57004167	78002349	238	53720										
CTNND1	0	genome.wustl.edu	37	chr11	57569455	57569455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcaatgacaaggtgaagactGacgtgcggaagctcaagggc	15	8	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	57569455	57569455	G	A	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	missense	c.1207	p.D403N	0.998	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	49	0	0	31	4	11.43	-	-	-	A	57569455	G	A	57569455	3	1	617	1	0	0	0	0	1	0	0	0	4051	1290	45	2	1225	2	CTNND1	11	57569455	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	565288	57569455	77437061	239	53721										
OR5A2	0	genome.wustl.edu	37	chr11	59189855	59189855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctcgctggtgaaggtatcaGagcaggacagagccaggact	14	10	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	59189855	59189855	G	C	SNP	OR5A2	ENST00000302040	human	ensembl	69_37n	-1	known	missense	c.572	p.S191C	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A2	HGNC	ENSG00000172324	57	0	0	29	13	30.95	-	-	-	C	59189855	G	C	59189855	3	2	617	1	0	0	0	0	1	0	0	0	11213	942	33	2	404	2	OR5A2	11	59189855	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1620400	59189855	75816661	240	53722										
FADS1	0	genome.wustl.edu	37	chr11	61578478	61578478	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aatcacaaaatgatgtagcaGatggttccactttgaggtgc	10	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	61578478	61578478	G	C	SNP	FADS1	ENST00000350997	human	ensembl	69_37n	-1	known	missense	c.754	p.L252V	0.858	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5,prints_Cyt_B5	-	no_errors	FADS1	HGNC	ENSG00000149485	37	0	0	29	10	25.64	-	-	-	C	61578478	G	C	61578478	3	2	617	1	0	0	0	0	1	0	0	0	5405	933	33	2	787	2	FADS1	11	61578478	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2388623	61578478	73428038	241	53723										
RARRES3	0	genome.wustl.edu	37	chr11	63312154	63312154	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgagcaacagtgcagaggtGaaacgggagcgcctggaaga	16	8	0	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	63312154	63312154	G	A	SNP	RARRES3	ENST00000255688	human	ensembl	69_37n	1	known	silent	c.180	p.V60	0.503	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321	38	0	0	11	5	31.25	-	-	-	A	63312154	G	A	63312154	2	1	617	1	0	0	0	0	0	0	0	1	13140	1277	45	2		2	RARRES3	11	63312154	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1733676	63312154	71694362	242	53724										
FIBP	0	genome.wustl.edu	37	chr11	65651446	65651446	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cggagcgttgggaggcacctCagtcatgatacaggcgcagg	16	10	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	65651446	65651446	C	G	SNP	FIBP	ENST00000338369	human	ensembl	69_37n	-1	known	nonstop	c.1094	p.*365S	0.998	NULL	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500	27	0	0	26	7	21.21	-	-	-	G	65651446	C	G	65651446	4	3	617	1	0	0	0	0	0	0	0	0	5932	837	29	2	4	2	FIBP	11	65651446	Nonstop_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2339292	65651446	69355070	243	53725										
MRPL48	0	genome.wustl.edu	37	chr11	73536836	73536836	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acaagcacttaattaaagcaGaagaggtaacgggcaggggg	14	6	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	73536836	73536836	G	A	SNP	MRPL48	ENST00000310614	human	ensembl	69_37n	1	known	missense	c.196	p.E66K	0.000	NULL	pfam_Ribosomal_S10,superfamily_Ribosomal_S10	-	no_errors	MRPL48	HGNC	ENSG00000175581	42	0	0	39	13	25	-	-	-	A	73536836	G	A	73536836	3	1	617	1	0	0	0	0	1	0	0	0	9884	943	33	2	210	2	MRPL48	11	73536836	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7885390	73536836	61469680	244	53726										
P4HA3	0	genome.wustl.edu	37	chr11	74013501	74013501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atggcagagccagtgactctCtgaaagacacctcgggccag	12	12	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	74013501	74013501	C	G	SNP	P4HA3	ENST00000331597	human	ensembl	69_37n	-1	known	missense	c.480	p.Q160H	1.000	pfam_Pro_4_hyd_alph_N	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380	56	0	0	31	8	20.51	-	-	-	G	74013501	C	G	74013501	3	3	617	1	0	0	0	0	1	0	0	0	11431	912	32	2	1198	2	P4HA3	11	74013501	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	476665	74013501	60993015	245	53727										
PPP2R1B	0	genome.wustl.edu	37	chr11	111597694	111597694	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttaaatctggggtattagtCtgtgctttgggagaaatgca	12	4	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	111597694	111597694	C	G	SNP	PPP2R1B	ENST00000311129	human	ensembl	69_37n	-1	known	missense	c.1999	p.D667H	0.956	NULL	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713	72	0	0	68	21	23.6	-	-	-	G	111597694	C	G	111597694	3	3	617	1	0	0	0	0	1	0	0	0	12460	913	32	2	8	2	PPP2R1B	11	111597694	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	37584193	111597694	23408822	246	53728										
DIXDC1	0	genome.wustl.edu	37	chr11	111866817	111866817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tccccaggttcgggtcaagtCacccagaactcaagtaggta	10	12	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	111866817	111866817	C	T	SNP	DIXDC1	ENST00000440460	human	ensembl	69_37n	1	known	missense	c.1700	p.S567L	1.000	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764	65	0	0	55	15	21.13	-	-	-	T	111866817	C	T	111866817	3	4	617	1	0	0	0	0	1	0	0	0	4577	838	29	2	1795	2	DIXDC1	11	111866817	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	269123	111866817	23139699	247	53729										
UBE4A	0	genome.wustl.edu	37	chr11	118245696	118245696	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaccaaacactgtatcttgtCctggcttggaaactgtttgc	8	10	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	118245696	118245696	C	G	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	missense	c.1223	p.S408C	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	39	0	0	35	11	23.91	-	-	-	G	118245696	C	G	118245696	3	3	617	1	0	0	0	0	1	0	0	0	16979	855	30	2	1253	2	UBE4A	11	118245696	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6378879	118245696	16760820	248	53730										
ARHGEF12	0	genome.wustl.edu	37	chr11	120312872	120312872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tccaaagaaactcgtcgcatCttccttgagtttcatcagtt	6	11	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	11	120312872	120312872	C	G	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.1206	p.I402M	1.000	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	101	0	0	80	29	26.61	-	-	-	G	120312872	C	G	120312872	3	3	617	1	0	0	0	0	1	0	0	0	899	903	32	2	1321	2	ARHGEF12	11	120312872	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2067176	120312872	14693644	249	53731										
NINJ2	0	genome.wustl.edu	37	chr12	674406	674406	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtcccaggctgcattcagaGaggattccttgaggccctgg	14	11	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	674406	674406	G	C	SNP	NINJ2	ENST00000305108	human	ensembl	69_37n	-1	known	missense	c.562	p.L188V	0.000	NULL	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840	28	0	0	25	6	19.35	-	-	-	C	674406	G	C	674406	3	2	617	1	0	0	0	0	1	0	0	0	10491	942	33	2	8	2	NINJ2	12	674406	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		674406	133177489	250	53732										
C12orf5	0	genome.wustl.edu	37	chr12	4440468	4440468	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagaaacaagatttaacaagGagaaaataatccaaggttgg	10	4	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	4440468	4440468	G	C	SNP	C12orf5	ENST00000179259	human	ensembl	69_37n	1	known	missense	c.55	p.E19Q	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	C12orf5	HGNC	ENSG00000078237	145	0	0	126	27	17.65	-	-	-	C	4440468	G	C	4440468	3	2	617	1	0	0	0	0	1	0	0	0	1706	1175	41	2	61	2	C12orf5	12	4440468	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3766062	4440468	129411427	251	53733										
GALNT8	0	genome.wustl.edu	37	chr12	4848374	4848374	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caactcccatccctcagtgtCattctcatattcgtgaatga	5	13	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	4848374	4848374	C	A	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	silent	c.555	p.V185	0.925	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	94	0	0	57	11	16.18	-	-	-	A	4848374	C	A	4848374	2	1	617	1	0	0	0	0	0	0	0	1	6269	813	29	2		2	GALNT8	12	4848374	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	407906	4848374	129003521	252	53734										
CHD4	0	genome.wustl.edu	37	chr12	6690968	6690968	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccagcgcccattaacatgttCaaactcctgaacctgtagca	6	14	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	6690968	6690968	C	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.4612	p.E1538Q	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	85	0	0	71	11	13.41	-	-	-	G	6690968	C	G	6690968	3	3	617	1	0	0	0	0	1	0	0	0	3356	835	29	2	1250	2	CHD4	12	6690968	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1842594	6690968	127160927	253	53735										
CASC1	0	genome.wustl.edu	37	chr12	25314105	25314105	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agcttcaatcgttcagctttGgtgactttctttttcttact	6	9	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	25314105	25314105	G	C	SNP	CASC1	ENST00000395987	human	ensembl	69_37n	-1	known	silent	c.48	p.T16	0.964	NULL	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307	137	0	0	124	33	21.02	-	-	-	C	25314105	G	C	25314105	2	2	617	1	0	0	0	0	0	0	0	1	2685	1335	47	4		4	CASC1	12	25314105	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	18623137	25314105	108537790	254	53736										
ALG10	0	genome.wustl.edu	37	chr12	34175615	34175615	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgcctcctcttctccgccttCagccgggcgttgcgagagcc	11	17	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	34175615	34175615	C	T	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	1	known	silent	c.81	p.F27	1.000	pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	64	0	0	62	16	20.51	-	-	-	T	34175615	C	T	34175615	2	4	617	1	0	0	0	0	0	0	0	1	511	825	29	2		2	ALG10	12	34175615	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8861510	34175615	99676280	255	53737										
ENDOU	0	genome.wustl.edu	37	chr12	48119180	48119180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acagcacggccaataccaggGagatgcaggccctcatggtg	13	12	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	48119180	48119180	G	A	SNP	ENDOU	ENST00000229003	human	ensembl	69_37n	-1	known	missense	c.17	p.S6F	0.034	NULL	pfam_Endoribonuclease_XendoU,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENDOU	HGNC	ENSG00000111405	69	0	0	55	9	14.06	-	-	-	A	48119180	G	A	48119180	3	1	617	1	0	0	0	0	1	0	0	0	5153	1174	41	2	1255	2	ENDOU	12	48119180	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	13943565	48119180	85732715	256	53738										
LARP4	0	genome.wustl.edu	37	chr12	50860767	50860767	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcatccttcaacagctgaatCaaaggctccaacaccaaagt	5	13	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	50860767	50860767	C	T	SNP	LARP4	ENST00000429001	human	ensembl	69_37n	1	known	missense	c.1427	p.S476L	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813	96	0	0	47	15	24.19	-	-	-	T	50860767	C	T	50860767	3	4	617	1	0	0	0	0	1	0	0	0	8684	838	29	2	1463	2	LARP4	12	50860767	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2741587	50860767	82991128	257	53739										
C12orf44	0	genome.wustl.edu	37	chr12	52467635	52467635	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gacttcacttatgtgcgtgtCtcttctgaggaactggatcg	11	9	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	52467635	52467635	C	G	SNP	C12orf44	ENST00000336854	human	ensembl	69_37n	1	known	silent	c.201	p.V67	1.000	pfam_ATG101	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395	121	0	0	68	12	15	-	-	-	G	52467635	C	G	52467635	2	3	617	1	0	0	0	0	0	0	0	1	1702	900	32	2		2	C12orf44	12	52467635	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1606868	52467635	81384260	258	53740										
HNRNPA1	0	genome.wustl.edu	37	chr12	54676905	54676905	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggttactctggaggaagcaGaggctatggaagtggtggac	17	5	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	54676905	54676905	G	C	SNP	HNRNPA1	ENST00000340913	human	ensembl	69_37n	1	known	missense	c.794	p.R265T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1	HGNC	ENSG00000135486	121	0	0	95	18	15.93	-	-	-	C	54676905	G	C	54676905	3	2	617	1	0	0	0	0	1	0	0	0	7308	942	33	2	824	2	HNRNPA1	12	54676905	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2209270	54676905	79174990	259	53741										
OR6C76	0	genome.wustl.edu	37	chr12	55820956	55820957	+	Frame_Shift_Ins	INS	-	-	A													0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgttctgagaaagatttcccINSacaaaaaaaaaaaacactga							TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	55820956	55820957	-	A	INS	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	frame_shift_ins	c.919_920	p.H307fs	0.001:0.001	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	9	0	0	3	2	40	-	-	-	A	55820957	-	A	55820956	7	5	617	1	0	1	1	0	0	0	0	0	11273	594	21	0	921	0	OR6C76	12	55820956	Frame_Shift_Ins	INS	-	TCGA-BH-A2L8-01A-11D-A18P-09	1144051	55820956	78030939	260	53742										
SRGAP1	0	genome.wustl.edu	37	chr12	64383792	64383792	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accttgagtgacatctatctGaacaatgtgattatgcggtt	9	7	2	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	64383792	64383792	G	C	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	silent	c.366	p.L122	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	62	0	0	53	8	13.11	-	-	-	C	64383792	G	C	64383792	2	2	617	1	0	0	0	0	0	0	0	1	15236	1277	45	2		2	SRGAP1	12	64383792	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8562836	64383792	69468103	261	53743										
GRIP1	0	genome.wustl.edu	37	chr12	66765534	66765534	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atttcttgtttcatttttctCagggttactgacttcctacc	5	10	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	66765534	66765534	C	T	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	silent	c.2952	p.L984	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	54	0	0	67	13	16.25	-	-	-	T	66765534	C	T	66765534	2	4	617	1	0	0	0	0	0	0	0	1	6838	813	29	2		2	GRIP1	12	66765534	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2381742	66765534	67086361	262	53744										
OSBPL8	0	genome.wustl.edu	37	chr12	76749731	76749731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaggaaaatgatgaagtagtCtttttgttgcagaaaataat	10	2	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	76749731	76749731	C	G	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.2608	p.D870H	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	64	0	0	38	13	25.49	-	-	-	G	76749731	C	G	76749731	3	3	617	1	0	0	0	0	1	0	0	0	11356	913	32	2	65	2	OSBPL8	12	76749731	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9984197	76749731	57102164	263	53745										
TMTC2	0	genome.wustl.edu	37	chr12	83289819	83289819	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtccagataccctcagttttGattggtcaatggatgctgtg	11	8	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	83289819	83289819	G	C	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	missense	c.877	p.D293H	1.000	pfam_DUF1736	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	48	0	0	25	6	19.35	-	-	-	C	83289819	G	C	83289819	3	2	617	1	0	0	0	0	1	0	0	0	16356	1290	45	2	887	2	TMTC2	12	83289819	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6540088	83289819	50562076	264	53746										
IKBIP	0	genome.wustl.edu	37	chr12	99020541	99020541	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggatgctttcagtagactCaagctgcatttataacacaa	7	9	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	99020541	99020541	C	G	SNP	IKBIP	ENST00000299157	human	ensembl	69_37n	-1	known	missense	c.301	p.E101Q	1.000	NULL	NULL	-	no_errors	IKBIP	HGNC	ENSG00000166130	18	0	0	18	8	30.77	-	-	-	G	99020541	C	G	99020541	3	3	617	1	0	0	0	0	1	0	0	0	7663	835	29	2	1596	2	IKBIP	12	99020541	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	15730722	99020541	34831354	265	53747										
ALDH1L2	0	genome.wustl.edu	37	chr12	105464405	105464405	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggatgggtgataaatgataGagccgtgctttggactatca	13	5	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	105464405	105464405	G	C	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.371	p.S124C	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	75	0	0	59	13	18.06	-	-	-	C	105464405	G	C	105464405	3	2	617	1	0	0	0	0	1	0	0	0	495	942	33	2	2484	2	ALDH1L2	12	105464405	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6443864	105464405	28387490	266	53748										
MTERFD3	0	genome.wustl.edu	37	chr12	107371808	107371808	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctggagaaattctagtgtttCctttatagctgtgggagaat	11	5	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	107371808	107371808	C	G	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	missense	c.685	p.E229Q	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	32	0	0	17	7	29.17	-	-	-	G	107371808	C	G	107371808	3	3	617	1	0	0	0	0	1	0	0	0	9993	864	30	2	476	2	MTERFD3	12	107371808	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1907403	107371808	26480087	267	53749										
ACACB	0	genome.wustl.edu	37	chr12	109671748	109671748	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcttctccctctcagagcctCagagaagagcccatccacat	7	16	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	109671748	109671748	C	T	SNP	ACACB	ENST00000538526	human	ensembl	69_37n	1	known	nonsense	c.244	p.Q82*	0.002	pfam_AcCoA_COase_cen	pfam_Carboxyl_trans,pfam_AcCoA_COase_cen,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACACB	HGNC	ENSG00000076555	52	0	0	43	10	18.87	-	-	-	T	109671748	C	T	109671748	4	4	617	1	0	0	0	0	0	1	0	0	107	813	29	2	4363	2	ACACB	12	109671748	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2299940	109671748	24180147	268	53750										
OAS3	0	genome.wustl.edu	37	chr12	113382293	113382293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accaacaggtcaggccggctCcggcgtcaaacccaagccac	10	17	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	113382293	113382293	C	T	SNP	OAS3	ENST00000228928	human	ensembl	69_37n	1	known	missense	c.473	p.S158F	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	33	0	0	31	8	20.51	-	-	-	T	113382293	C	T	113382293	3	4	617	1	0	0	0	0	1	0	0	0	10874	855	30	2	483	2	OAS3	12	113382293	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3710545	113382293	20469602	269	53751										
SUDS3	0	genome.wustl.edu	37	chr12	118821844	118821844	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggacaaactggcttctctCaagaggcagttgcaacaact	9	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	118821844	118821844	C	T	SNP	SUDS3	ENST00000397564	human	ensembl	69_37n	1	known	silent	c.240	p.L80	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707	63	0	0	43	14	24.56	-	-	-	T	118821844	C	T	118821844	2	4	617	1	0	0	0	0	0	0	0	1	15458	813	29	2		2	SUDS3	12	118821844	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	5439551	118821844	15030051	270	53752										
WDR66	0	genome.wustl.edu	37	chr12	122395019	122395019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attaaggggaacattaagttCtatgatcacaccctgtctat	7	8	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	122395019	122395019	C	G	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.1575	p.F525L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	57	0	0	53	12	18.46	-	-	-	G	122395019	C	G	122395019	3	3	617	1	0	0	0	0	1	0	0	0	17414	912	32	2	1613	2	WDR66	12	122395019	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3573175	122395019	11456876	271	53753										
GOLGA3	0	genome.wustl.edu	37	chr12	133354347	133354347	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agctccaaggaggccgccttGaagtggcggcggttatgccc	15	12	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	12	133354347	133354347	G	C	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.3627	p.F1209L	0.985	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	35	0	0	16	5	23.81	-	-	-	C	133354347	G	C	133354347	3	2	617	1	0	0	0	0	1	0	0	0	6606	1281	45	2	893	2	GOLGA3	12	133354347	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	10959328	133354347	497548	272	53754										
SACS	0	genome.wustl.edu	37	chr13	23928978	23928978	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctgagctctggaggtagttGagcacagtttttgtgtattc	12	7	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	23928978	23928978	G	C	SNP	SACS	ENST00000455470	human	ensembl	69_37n	-1	putative	missense	c.1471	p.Q491E	0.953	NULL	superfamily_ATPase-like_ATP-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SACS	HGNC	ENSG00000151835	43	0	0	29	5	14.71	-	-	-	C	23928978	G	C	23928978	3	2	617	1	0	0	0	0	1	0	0	0	13890	1277	45	2	11978	2	SACS	13	23928978	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		23928978	91240900	273	53755										
PARP4	0	genome.wustl.edu	37	chr13	25021263	25021263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcacatctggattgagttgcTgccatttgacggagacagag	13	8	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	25021263	25021263	T	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3176	p.Q1059R	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	32	0	0	42	5	10.64	-	-	-	C	25021263	T	C	25021263	3	2	617	1	0	0	0	0	1	0	0	0	11536	1580	55	5	2034	5	PARP4	13	25021263	Missense_Mutation	SNP	T	TCGA-BH-A2L8-01A-11D-A18P-09	1092285	25021263	90148615	274	53756										
NBEA	0	genome.wustl.edu	37	chr13	35756527	35756527	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aacaagcacagttcttagctCtggctgttgtttacttcatt	7	9	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	35756527	35756527	C	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	silent	c.4693	p.L1565	0.914	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	95	0	0	54	19	26.03	-	-	-	T	35756527	C	T	35756527	2	4	617	1	0	0	0	0	0	0	0	1	10259	912	32	2		2	NBEA	13	35756527	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	10735264	35756527	79413351	275	53757										
ELF1	0	genome.wustl.edu	37	chr13	41517154	41517154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgtgcttcccccacaacctgGacactgctttagaatccacc	6	16	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	41517154	41517154	G	A	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	missense	c.740	p.S247F	1.000	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	56	0	0	48	11	18.64	-	-	-	A	41517154	G	A	41517154	3	1	617	1	0	0	0	0	1	0	0	0	5090	1174	41	2	1131	2	ELF1	13	41517154	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5760627	41517154	73652724	276	53758										
OLFM4	0	genome.wustl.edu	37	chr13	53608510	53608510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccaatttcaccggctccgtgGatgaccgtgggacctgccag	12	14	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	53608510	53608510	G	A	SNP	OLFM4	ENST00000219022	human	ensembl	69_37n	1	known	missense	c.232	p.D78N	0.990	NULL	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837	117	0	0	79	10	10.99	-	-	-	A	53608510	G	A	53608510	3	1	617	1	0	0	0	0	1	0	0	0	10928	1174	41	2	238	2	OLFM4	13	53608510	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	12091356	53608510	61561368	277	53759										
BIVM	0	genome.wustl.edu	37	chr13	103468896	103468896	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagcggaaagtattagacctCagacgatggtgatgttatca	11	7	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	103468896	103468896	C	T	SNP	BIVM	ENST00000257336	human	ensembl	69_37n	1	known	silent	c.597	p.L199	1.000	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897	64	0	0	38	12	24	-	-	-	T	103468896	C	T	103468896	2	4	617	1	0	0	0	0	0	0	0	1	1446	813	29	2		2	BIVM	13	103468896	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	49860386	103468896	11700982	278	53760										
ATP11A	0	genome.wustl.edu	37	chr13	113532584	113532584	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accatctttatgctttctcaGacttccagcagcctgagttt	6	12	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	113532584	113532584	G	A	SNP	ATP11A	ENST00000283558	human	ensembl	69_37n	1	known	silent	c.3381	p.Q1127	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	68	0	0	57	10	14.93	-	-	-	A	113532584	G	A	113532584	2	1	617	1	0	0	0	0	0	0	0	1	1123	933	33	2		2	ATP11A	13	113532584	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	10063688	113532584	1637294	279	53761										
CDC16	0	genome.wustl.edu	37	chr13	115002150	115002150	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaagtgctctattttgggcaGataaagtagcttcactctct	8	8	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	13	115002150	115002150	G	C	SNP	CDC16	ENST00000356221	human	ensembl	69_37n	1	known	missense	c.79	p.D27H	1.000	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177	71	0	0	42	7	14.29	-	-	-	C	115002150	G	C	115002150	3	2	617	1	0	0	0	0	1	0	0	0	3087	942	33	2	85	2	CDC16	13	115002150	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1469566	115002150	167728	280	53762										
FOXA1	0	genome.wustl.edu	37	chr14	38061240	38061240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cgttctcgaacatgttgccgGagtccgggtgcagcgtccag	14	12	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	38061240	38061240	G	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.749	p.S250F	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	21	0	0	8	5	38.46	-	-	-	A	38061240	G	A	38061240	3	1	617	1	0	0	0	0	1	0	0	0	6035	1174	41	2	673	2	FOXA1	14	38061240	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		38061240	69288300	281	53763										
FBXO33	0	genome.wustl.edu	37	chr14	39870578	39870578	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aacacaagtgatatagctatCaaaatgaatcctctctagtg	6	8	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	39870578	39870578	C	T	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	missense	c.1198	p.D400N	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	92	0	0	39	13	25	-	-	-	T	39870578	C	T	39870578	3	4	617	1	0	0	0	0	1	0	0	0	5789	826	29	2	477	2	FBXO33	14	39870578	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1809338	39870578	67478962	282	53764										
FUT8	0	genome.wustl.edu	37	chr14	66136187	66136187	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagatctggcatctccactgGacactggtcaggtaaggagc	12	11	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	66136187	66136187	G	C	SNP	FUT8	ENST00000360689	human	ensembl	69_37n	1	known	missense	c.824	p.G275A	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170	64	0	0	52	8	13.33	-	-	-	C	66136187	G	C	66136187	3	2	617	1	0	0	0	0	1	0	0	0	6159	1183	41	2	941	2	FUT8	14	66136187	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	26265609	66136187	41213353	283	53765										
RBM25	0	genome.wustl.edu	37	chr14	73570039	73570039	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggaaagagaacgtgaacgagAaaaggagaaagaacgggagc	16	4	0	5			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	73570039	73570039	A	T	SNP	RBM25	ENST00000261973	human	ensembl	69_37n	1	known	missense	c.1007	p.E336V	1.000	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	121	0	0	66	13	16.46	-	-	-	T	73570039	A	T	73570039	3	4	617	1	0	0	0	0	1	0	0	0	13208	246	9	5	1041	5	RBM25	14	73570039	Missense_Mutation	SNP	A	TCGA-BH-A2L8-01A-11D-A18P-09	7433852	73570039	33779501	284	53766										
HEATR4	0	genome.wustl.edu	37	chr14	73969631	73969631	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgcacctctttcccgaggctCatttgcccaagcgcctgtgc	9	16	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	73969631	73969631	C	G	SNP	HEATR4	ENST00000334988	human	ensembl	69_37n	-1	known	missense	c.2073	p.M691I	0.997	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	51	0	0	49	7	12.5	-	-	-	G	73969631	C	G	73969631	3	3	617	1	0	0	0	0	1	0	0	0	7081	826	29	2	1039	2	HEATR4	14	73969631	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	399592	73969631	33379909	285	53767										
KIAA1737	0	genome.wustl.edu	37	chr14	77576159	77576159	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcttctgcccaccagatggGagctcggaatgtctgagctc	11	12	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	77576159	77576159	G	A	SNP	KIAA1737	ENST00000361786	human	ensembl	69_37n	1	known	silent	c.141	p.G47	1.000	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894	34	0	0	23	5	17.86	-	-	-	A	77576159	G	A	77576159	2	1	617	1	0	0	0	0	0	0	0	1	8307	1161	41	2		2	KIAA1737	14	77576159	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3606528	77576159	29773381	286	53768										
KIAA1737	0	genome.wustl.edu	37	chr14	77579894	77579894	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcagtccatgtcacactggtGagaaaaagtccgactccagg	10	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	77579894	77579894	G	A	SNP	KIAA1737	ENST00000361786	human	ensembl	69_37n	1	known	missense	c.433	p.E145K	0.628	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894	45	0	0	49	17	25.37	-	-	-	A	77579894	G	A	77579894	3	1	617	1	0	0	0	0	1	0	0	0	8307	1291	45	2	443	2	KIAA1737	14	77579894	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3735	77579894	29769646	287	53769										
ZC3H14	0	genome.wustl.edu	37	chr14	89073594	89073594	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttccctttgtagctgagatGagtgaactgagtgtggcaca	12	7	0	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	89073594	89073594	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	69_37n	1	known	missense	c.1755	p.M585I	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	72	0	0	55	7	10.94	-	-	-	A	89073594	G	A	89073594	3	1	617	1	0	0	0	0	1	0	0	0	17662	1290	45	2	2194	2	ZC3H14	14	89073594	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	11493700	89073594	18275946	288	53770										
CPSF2	0	genome.wustl.edu	37	chr14	92608685	92608685	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttacaatgtggtggagttttCtaagtcccaggtttgttctc	10	7	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	92608685	92608685	C	T	SNP	CPSF2	ENST00000298875	human	ensembl	69_37n	1	known	missense	c.839	p.S280F	1.000	pfam_Beta_Casp	pfam_Beta_Casp,pfam_RMMBL,pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	CPSF2	HGNC	ENSG00000165934	102	0	0	79	16	16.84	-	-	-	T	92608685	C	T	92608685	3	4	617	1	0	0	0	0	1	0	0	0	3855	913	32	2	861	2	CPSF2	14	92608685	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3535091	92608685	14740855	289	53771										
KLC1	0	genome.wustl.edu	37	chr14	104145801	104145801	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagaagcgcaggagccgtgaGagcctcaacgtggacgtggt	17	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	14	104145801	104145801	G	C	SNP	KLC1	ENST00000334553	human	ensembl	69_37n	1	known	missense	c.1569	p.E523D	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	75	0	0	59	9	13.24	-	-	-	C	104145801	G	C	104145801	3	2	617	1	0	0	0	0	1	0	0	0	8386	933	33	2	1615	2	KLC1	14	104145801	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	11537116	104145801	3203739	290	53772										
RYR3	0	genome.wustl.edu	37	chr15	33954819	33954819	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtctcaggacgaaggctctGagtatgctgacagaggcagt	14	8	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	33954819	33954819	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.5088	p.L1696	0.996	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	46	0	0	46	10	17.86	-	-	-	A	33954819	G	A	33954819	2	1	617	1	0	0	0	0	0	0	0	1	13856	1277	45	2		2	RYR3	15	33954819	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		33954819	68576573	291	53773										
RYR3	0	genome.wustl.edu	37	chr15	34134069	34134069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tttcccatttctgcagcatgGaagatggagagaaggaagac	12	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	34134069	34134069	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.13042	p.E4348K	1.000	pfam_Ryanrecept_TM4-6,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	95	0	0	73	9	10.98	-	-	-	A	34134069	G	A	34134069	3	1	617	1	0	0	0	0	1	0	0	0	13856	1175	41	2	13404	2	RYR3	15	34134069	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	179250	34134069	68397323	292	53774										
RPUSD2	0	genome.wustl.edu	37	chr15	40864016	40864016	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tacaccccttgcatcggcttGaccgccttacctcaggggtg	10	15	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	40864016	40864016	G	C	SNP	RPUSD2	ENST00000315616	human	ensembl	69_37n	1	known	missense	c.820	p.D274H	1.000	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133	34	0	0	42	13	22.41	-	-	-	C	40864016	G	C	40864016	3	2	617	1	0	0	0	0	1	0	0	0	13753	1290	45	2	826	2	RPUSD2	15	40864016	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	6729947	40864016	61667376	293	53775										
MYO5A	0	genome.wustl.edu	37	chr15	52667644	52667644	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgctgccttggttctgcgcaGaaacttagcatagctggcca	11	11	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	52667644	52667644	G	A	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	silent	c.2434	p.L812	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	68	0	0	54	10	15.62	-	-	-	A	52667644	G	A	52667644	2	1	617	1	0	0	0	0	0	0	0	1	10150	933	33	2		2	MYO5A	15	52667644	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	11803628	52667644	49863748	294	53776										
VPS13C	0	genome.wustl.edu	37	chr15	62256936	62256936	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttttttgttgtttttcagttGaaatttgtacctccttagca	6	6	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	62256936	62256936	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.3176	p.S1059L	0.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	48	0	0	38	8	17.39	-	-	-	A	62256936	G	A	62256936	3	1	617	1	0	0	0	0	1	0	0	0	17288	1294	45	2	8333	2	VPS13C	15	62256936	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	9589292	62256936	40274456	295	53777										
ARIH1	0	genome.wustl.edu	37	chr15	72874491	72874491	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagatatttcccaagattctCtgcaggatataaagcagaaa	8	7	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	72874491	72874491	C	A	SNP	ARIH1	ENST00000379887	human	ensembl	69_37n	1	known	missense	c.1552	p.L518M	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH1	HGNC	ENSG00000166233	76	0	0	42	11	20.75	-	-	-	A	72874491	C	A	72874491	3	1	617	1	0	0	0	0	1	0	0	0	925	912	32	2	1602	2	ARIH1	15	72874491	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	10617555	72874491	29656901	296	53778										
CLK3	0	genome.wustl.edu	37	chr15	74922117	74922117	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgaggaggatgttagaatttGaccctgcccagcgcatcaca	11	10	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	74922117	74922117	G	C	SNP	CLK3	ENST00000395066	human	ensembl	69_37n	1	known	missense	c.1810	p.D604H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK3	HGNC	ENSG00000179335	53	0	0	37	13	26	-	-	-	C	74922117	G	C	74922117	3	2	617	1	0	0	0	0	1	0	0	0	3568	1290	45	2	1860	2	CLK3	15	74922117	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2047626	74922117	27609275	297	53779										
FBXO22	0	genome.wustl.edu	37	chr15	76225245	76225245	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagtattacagagccaagggGaatgttgaggctgatgcatt	13	6	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	76225245	76225245	G	C	SNP	FBXO22	ENST00000308275	human	ensembl	69_37n	1	known	silent	c.1014	p.G338	0.003	pfam_FIST_C_domain	pfam_FIST_C_domain,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO22	HGNC	ENSG00000167196	191	0	0	120	28	18.92	-	-	-	C	76225245	G	C	76225245	2	2	617	1	0	0	0	0	0	0	0	1	5780	1161	41	2		2	FBXO22	15	76225245	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1303128	76225245	26306147	298	53780										
IL16	0	genome.wustl.edu	37	chr15	81571975	81571975	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttccctgtgcagccacctgtCtcccccactgtgccgctccc	7	21	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	81571975	81571975	C	G	SNP	IL16	ENST00000302987	human	ensembl	69_37n	1	known	missense	c.941	p.S314C	0.886	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Interleukin-16	-	no_errors	IL16	HGNC	ENSG00000172349	33	0	0	17	8	32	-	-	-	G	81571975	C	G	81571975	3	3	617	1	0	0	0	0	1	0	0	0	7687	913	32	2	967	2	IL16	15	81571975	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	5346730	81571975	20959417	299	53781										
WDR93	0	genome.wustl.edu	37	chr15	90281436	90281436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcccccaagcactgccactgGagaagagatgtgagcgtttc	11	12	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	90281436	90281436	G	A	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	missense	c.1930	p.E644K	0.441	NULL	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	57	0	0	33	12	26.67	-	-	-	A	90281436	G	A	90281436	3	1	617	1	0	0	0	0	1	0	0	0	17437	1175	41	2	1988	2	WDR93	15	90281436	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8709461	90281436	12249956	300	53782										
CHD2	0	genome.wustl.edu	37	chr15	93510679	93510679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaaaagatgtggagaaatccCttcctgctaaagtggaacag	10	7	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	15	93510679	93510679	C	T	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.2125	p.L709F	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	46	0	0	26	7	21.21	-	-	-	T	93510679	C	T	93510679	3	4	617	1	0	0	0	0	1	0	0	0	3354	681	24	4	2191	4	CHD2	15	93510679	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3229243	93510679	9020713	301	53783										
CLDN6	0	genome.wustl.edu	37	chr16	3065372	3065372	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cctccacgtcagacgtaattCttggtagggtactcagaggg	12	10	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	3065372	3065372	C	G	SNP	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	missense	c.651	p.K217N	1.000	prints_Claudin6	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	27	0	0	17	7	29.17	-	-	-	G	3065372	C	G	3065372	3	3	617	1	0	0	0	0	1	0	0	0	3519	912	32	2	15	2	CLDN6	16	3065372	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		3065372	87289381	302	53784										
ZNF263	0	genome.wustl.edu	37	chr16	3339713	3339713	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	accagagaatacatgcagctGaaagactgtgtatgggtgtg	13	6	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	3339713	3339713	G	A	SNP	ZNF263	ENST00000219069	human	ensembl	69_37n	1	known	missense	c.1207	p.E403K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	35	0	0	31	5	13.89	-	-	-	A	3339713	G	A	3339713	3	1	617	1	0	0	0	0	1	0	0	0	17899	1291	45	2	1229	2	ZNF263	16	3339713	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	274341	3339713	87015040	303	53785										
GRIN2A	0	genome.wustl.edu	37	chr16	9858521	9858521	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acaaatgtttggagttcgttCatgttgtctccaaaaatgct	8	7	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	9858521	9858521	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.2880	p.M960I	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	60	0	0	59	9	13.04	-	-	-	T	9858521	C	T	9858521	3	4	617	1	0	0	0	0	1	0	0	0	6830	826	29	2	1518	2	GRIN2A	16	9858521	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6518808	9858521	80496232	304	53786										
ZNF646	0	genome.wustl.edu	37	chr16	31094355	31094355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccccctccacccacccccaCgaccccactcctggatcctt	4	25	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	31094355	31094355	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	missense	c.5441	p.T1814M	0.456	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	22	0	0	23	6	20.69	-	-	-	T	31094355	C	T	31094355	3	4	617	1	0	0	0	0	1	0	0	0	18158	536	19	1	5447	1	ZNF646	16	31094355	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	21235834	31094355	59260398	305	53787										
NDRG4	0	genome.wustl.edu	37	chr16	58537830	58537830	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagtgcagcccagcctcagtCagccctcctctgcctcccat	7	19	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	58537830	58537830	C	T	SNP	NDRG4	ENST00000563799	human	ensembl	69_37n	1	known	silent	c.150	p.V50	0.000	NULL	pfam_Ndr	-	no_errors	NDRG4	HGNC	ENSG00000103034	25	0	0	16	8	33.33	-	-	-	T	58537830	C	T	58537830	2	4	617	1	0	0	0	0	0	0	0	1	10326	841	29	2		2	NDRG4	16	58537830	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	27443475	58537830	31816923	306	53788										
CDH5	0	genome.wustl.edu	37	chr16	66424332	66424332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acacatttgtcgtgcctgaaGacacccgtgtgggcacctct	10	13	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	66424332	66424332	G	C	SNP	CDH5	ENST00000341529	human	ensembl	69_37n	1	known	missense	c.808	p.D270H	0.970	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776	59	0	0	33	9	21.43	-	-	-	C	66424332	G	C	66424332	3	2	617	1	0	0	0	0	1	0	0	0	3142	942	33	2	826	2	CDH5	16	66424332	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7886502	66424332	23930421	307	53789										
CDH1	0	genome.wustl.edu	37	chr16	68863661	68863661	+	Frame_Shift_Del	DEL	C	C	-													0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtcccccggtatcttccccgCcctgccaatcccgatgaaat							TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	68863661	68863661	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2400	p.P801fs	0.975	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	32	0	0	28	4	12.5	-	-	-	-	68863661	C	-	68863661	7	5	617	1	0	1	0	1	0	0	0	0	3124	726	26	0	2458	0	CDH1	16	68863661	Frame_Shift_Del	DEL	C	TCGA-BH-A2L8-01A-11D-A18P-09	2439329	68863661	21491092	308	53790										
CLEC18C	0	genome.wustl.edu	37	chr16	70208876	70208876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acaggaaggagagtttcttgCtcctctccctgcacaaccgc	9	14	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	70208876	70208876	C	T	SNP	CLEC18C	ENST00000314151	human	ensembl	69_37n	1	known	missense	c.151	p.L51F	1.000	superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_C-type_lectin,pfam_CAP_domain,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18C	HGNC	ENSG00000157335	35	0	0	17	5	22.73	-	-	-	T	70208876	C	T	70208876	3	4	617	1	0	0	0	0	1	0	0	0	3534	797	28	4	157	4	CLEC18C	16	70208876	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1345215	70208876	20145877	309	53791										
HYDIN	0	genome.wustl.edu	37	chr16	71163612	71163612	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgcaccagcctcctctgattCgcaaaggttcgggacagaac	10	13	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	71163612	71163612	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.1158	p.A386	0.997	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	59	0	0	40	10	20	-	-	-	T	71163612	C	T	71163612	2	4	617	1	0	0	0	0	0	0	0	1	7521	871	31	1		1	HYDIN	16	71163612	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	954736	71163612	19191141	310	53792										
VAT1L	0	genome.wustl.edu	37	chr16	77913106	77913106	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggagagaccaagagcttcttCagctttgcaaaatcagtaag	10	8	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	77913106	77913106	C	T	SNP	VAT1L	ENST00000302536	human	ensembl	69_37n	1	known	silent	c.867	p.F289	0.992	smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1L	HGNC	ENSG00000171724	67	0	0	72	16	18.18	-	-	-	T	77913106	C	T	77913106	2	4	617	1	0	0	0	0	0	0	0	1	17227	825	29	2		2	VAT1L	16	77913106	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6749494	77913106	12441647	311	53793										
FOXL1	0	genome.wustl.edu	37	chr16	86612425	86612425	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cccggcctccctctggccttCgcccccgcggctgctctagc	10	22	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	16	86612425	86612425	C	T	SNP	FOXL1	ENST00000320241	human	ensembl	69_37n	1	known	silent	c.96	p.F32	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678	22	0	0	8	4	33.33	-	-	-	T	86612425	C	T	86612425	2	4	617	1	0	0	0	0	0	0	0	1	6064	883	31	1		1	FOXL1	16	86612425	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8699319	86612425	3742328	312	53794										
ASGR2	0	genome.wustl.edu	37	chr17	7017544	7017544	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gctcagctgctggatatcttGaaagtccttggccatgatgg	12	9	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	7017544	7017544	G	C	SNP	ASGR2	ENST00000355035	human	ensembl	69_37n	-1	known	missense	c.16	p.Q6E	0.951	NULL	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR2	HGNC	ENSG00000161944	99	0	0	57	12	17.39	-	-	-	C	7017544	G	C	7017544	3	2	617	1	0	0	0	0	1	0	0	0	1044	1299	45	2	951	2	ASGR2	17	7017544	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		7017544	74177666	313	53795										
CHD3	0	genome.wustl.edu	37	chr17	7808967	7808967	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagtcaaagaggcagctccgGaatgagaaagataagccact	11	9	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	7808967	7808967	G	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	silent	c.4167	p.R1389	0.992	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	21	0	0	25	9	26.47	-	-	-	A	7808967	G	A	7808967	2	1	617	1	0	0	0	0	0	0	0	1	3355	1161	41	2		2	CHD3	17	7808967	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	791423	7808967	73386243	314	53796										
CHD3	0	genome.wustl.edu	37	chr17	7809938	7809938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acggctctgaaacctttgccGatggggtccctcgggaggga	15	11	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	7809938	7809938	G	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.4426	p.D1476N	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	56	0	0	41	12	22.64	-	-	-	A	7809938	G	A	7809938	3	1	617	1	0	0	0	0	1	0	0	0	3355	1058	37	1	4821	1	CHD3	17	7809938	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	971	7809938	73385272	315	53797										
AURKB	0	genome.wustl.edu	37	chr17	8110613	8110613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggcttttcttctcccgagcCaagtacacgtttccaaactt	6	13	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	8110613	8110613	C	T	SNP	AURKB	ENST00000584972	human	ensembl	69_37n	-1	novel	missense	c.73	p.G25S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AURKB	HGNC	ENSG00000178999	59	0	0	35	4	10.26	-	-	-	T	8110613	C	T	8110613	3	4	617	1	0	0	0	0	1	0	0	0	1227	593	21	4	775	4	AURKB	17	8110613	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	300675	8110613	73084597	316	53798										
PFAS	0	genome.wustl.edu	37	chr17	8158418	8158418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctgggctggggcctgtggatCgtgtggagaccacccggcgc	18	12	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	8158418	8158418	C	T	SNP	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	missense	c.352	p.R118C	0.997	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	35	0	0	19	7	26.92	-	-	-	T	8158418	C	T	8158418	3	4	617	1	0	0	0	0	1	0	0	0	11828	884	31	1	362	1	PFAS	17	8158418	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	47805	8158418	73036792	317	53799										
PIGL	0	genome.wustl.edu	37	chr17	16221195	16221195	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggatgtcctcttcgtgctCaacagcaaagaagtggcaca	10	11	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	16221195	16221195	C	T	SNP	PIGL	ENST00000395844	human	ensembl	69_37n	1	novel	nonsense	c.601	p.Q201*	0.885	NULL	pfam_GlcNAc_PIno_de-acetylase,superfamily_LmbE-like_dom	-	no_errors	PIGL	HGNC	ENSG00000108474	55	0	0	47	6	11.32	-	-	-	T	16221195	C	T	16221195	4	4	617	1	0	0	0	0	0	1	0	0	11965	813	29	2	655	2	PIGL	17	16221195	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	8062777	16221195	64974015	318	53800										
SUPT6H	0	genome.wustl.edu	37	chr17	27009875	27009875	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccaaggattacgtttgcagGtaggcatgcagcaggtggct	15	8	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	27009875	27009875	G	T	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	splice_site	c.1727+1	e13+1	1.000	-	-	-	no_errors	SUPT6H	HGNC	ENSG00000109111	39	0	0	26	4	13.33	-	-	-	T	27009875	G	T	27009875	5	4	617	1	0	0	0	0	0	0	1	0	15491	1275	44	4	1778	4	SUPT6H	17	27009875	Splice_Site	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	10788680	27009875	54185335	319	53801										
CRLF3	0	genome.wustl.edu	37	chr17	29112973	29112973	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cacagcttgatcccgctgcaGagagtcatatccatcctgtt	8	13	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	29112973	29112973	G	C	SNP	CRLF3	ENST00000324238	human	ensembl	69_37n	-1	known	missense	c.1036	p.L346V	0.994	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF3	HGNC	ENSG00000176390	99	0	0	121	35	22.44	-	-	-	C	29112973	G	C	29112973	3	2	617	1	0	0	0	0	1	0	0	0	3918	933	33	2	300	2	CRLF3	17	29112973	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2103098	29112973	52082237	320	53802										
SLFN12	0	genome.wustl.edu	37	chr17	33749892	33749892	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atcactccccctccagaattGagcagagcacacatagctcg	7	15	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	33749892	33749892	G	C	SNP	SLFN12	ENST00000304905	human	ensembl	69_37n	-1	known	silent	c.156	p.L52	0.113	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123	39	0	0	33	8	19.51	-	-	-	C	33749892	G	C	33749892	2	2	617	1	0	0	0	0	0	0	0	1	14823	1277	45	2		2	SLFN12	17	33749892	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4636919	33749892	47445318	321	53803										
CCL23	0	genome.wustl.edu	37	chr17	34340801	34340801	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tacatgacacccggcttggaGcactcgctgttcgtttcaaa	9	12	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	34340801	34340801	G	T	SNP	CCL23	ENST00000293280	human	ensembl	69_37n	-1	known	nonsense	c.285	p.C95*	0.053	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL23	HGNC	ENSG00000167236	65	0	0	51	12	19.05	-	-	-	T	34340801	G	T	34340801	4	4	617	1	0	0	0	0	0	1	0	0	2922	963	34	4	136	4	CCL23	17	34340801	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	590909	34340801	46854409	322	53804										
MED1	0	genome.wustl.edu	37	chr17	37566462	37566462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgcggggtgagccggaagagGagttctgcctttctaaaggg	17	7	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	37566462	37566462	G	T	SNP	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	missense	c.2012	p.S671Y	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	42	0	0	37	6	13.95	-	-	-	T	37566462	G	T	37566462	3	4	617	1	0	0	0	0	1	0	0	0	9496	1174	41	2	2737	2	MED1	17	37566462	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3225661	37566462	43628748	323	53805										
KRT35	0	genome.wustl.edu	37	chr17	39637140	39637140	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagcctccagcagggaggcaGagagcagggaggcagctggt	18	9	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	39637140	39637140	G	A	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	silent	c.210	p.L70	0.007	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	33	0	0	40	7	14.89	-	-	-	A	39637140	G	A	39637140	2	1	617	1	0	0	0	0	0	0	0	1	8525	929	33	2		2	KRT35	17	39637140	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2070678	39637140	41558070	324	53806										
MLX	0	genome.wustl.edu	37	chr17	40722134	40722134	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtccttcaatgcctccatctCagtggccagcttccaggagc	9	15	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	40722134	40722134	C	T	SNP	MLX	ENST00000246912	human	ensembl	69_37n	1	known	missense	c.773	p.S258L	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLX	HGNC	ENSG00000108788	71	0	0	53	9	14.52	-	-	-	T	40722134	C	T	40722134	3	4	617	1	0	0	0	0	1	0	0	0	9706	838	29	2	799	2	MLX	17	40722134	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1084994	40722134	40473076	325	53807										
ITGA2B	0	genome.wustl.edu	37	chr17	42453698	42453698	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcgcagctccacttgggcctCtgcccggaccggcacgtcca	11	18	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	42453698	42453698	C	G	SNP	ITGA2B	ENST00000262407	human	ensembl	69_37n	-1	known	missense	c.2326	p.E776Q	0.126	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	60	0	0	49	11	18.33	-	-	-	G	42453698	C	G	42453698	3	3	617	1	0	0	0	0	1	0	0	0	7930	922	32	2	825	2	ITGA2B	17	42453698	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1731564	42453698	38741512	326	53808										
MBTD1	0	genome.wustl.edu	37	chr17	49270242	49270242	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tacccactgatcatactcttCttcccatccatcaaaatgta	2	14	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	49270242	49270242	C	T	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.1591	p.E531K	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	82	0	0	60	11	15.49	-	-	-	T	49270242	C	T	49270242	3	4	617	1	0	0	0	0	1	0	0	0	9431	922	32	2	307	2	MBTD1	17	49270242	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6816544	49270242	31924968	327	53809										
LPO	0	genome.wustl.edu	37	chr17	56321413	56321413	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtcaggccaaggtccaagtCaacaaggccttcctggactc	10	13	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	56321413	56321413	C	T	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	silent	c.135	p.V45	1.000	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	42	0	0	31	6	16.22	-	-	-	T	56321413	C	T	56321413	2	4	617	1	0	0	0	0	0	0	0	1	8988	813	29	2		2	LPO	17	56321413	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	7051171	56321413	24873797	328	53810										
STRADA	0	genome.wustl.edu	37	chr17	61784684	61784684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atcgtggaccactcgctgccGctgcccatggcttatcatgc	10	15	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	61784684	61784684	G	C	SNP	STRADA	ENST00000336174	human	ensembl	69_37n	-1	known	missense	c.676	p.R226G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	45	0	0	23	6	20.69	-	-	-	C	61784684	G	C	61784684	3	2	617	1	0	0	0	0	1	0	0	0	15415	1086	38	3	697	3	STRADA	17	61784684	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5463271	61784684	19410526	329	53811										
BPTF	0	genome.wustl.edu	37	chr17	65936663	65936663	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgggcagaaaagcttaacttCagcaacgtccacttcaaata	7	10	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	65936663	65936663	C	T	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.6746	p.S2249L	0.080	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	43	0	0	47	11	18.64	-	-	-	T	65936663	C	T	65936663	3	4	617	1	0	0	0	0	1	0	0	0	1503	838	29	2	6828	2	BPTF	17	65936663	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4151979	65936663	15258547	330	53812										
KIAA0195	0	genome.wustl.edu	37	chr17	73484157	73484157	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtcagcctgctggttgaagGagacatcatagctttgaggc	13	8	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	73484157	73484157	G	C	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.554	p.G185A	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	55	0	0	54	14	20.59	-	-	-	C	73484157	G	C	73484157	3	2	617	1	0	0	0	0	1	0	0	0	8212	1174	41	2	572	2	KIAA0195	17	73484157	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7547494	73484157	7711053	331	53813										
DNAH17	0	genome.wustl.edu	37	chr17	76459075	76459075	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ggtgtagttgtagcgcctctCagtagccaggtataccctgg	13	10	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	17	76459075	76459075	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.8983	p.E2995K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	109	0	0	58	16	21.62	-	-	-	T	76459075	C	T	76459075	3	4	617	1	0	0	0	0	1	0	0	0	4637	835	29	2	4463	2	DNAH17	17	76459075	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	2974918	76459075	4736135	332	53814										
LAMA1	0	genome.wustl.edu	37	chr18	6992681	6992681	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attgggtagtaggaaatcttCatccaaagtctgatttaaag	9	5	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	18	6992681	6992681	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.5047	p.E1683K	0.000	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	71	0	0	41	10	19.61	-	-	-	T	6992681	C	T	6992681	3	4	617	1	0	0	0	0	1	0	0	0	8659	835	29	2	4292	2	LAMA1	18	6992681	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		6992681	71084567	333	53815										
NPC1	0	genome.wustl.edu	37	chr18	21152054	21152054	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctacctggacagaaactgtaGaggcagctgcaggttgtctt	12	9	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	18	21152054	21152054	G	C	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.271	p.L91V	0.998	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	49	0	0	24	10	29.41	-	-	-	C	21152054	G	C	21152054	3	2	617	1	0	0	0	0	1	0	0	0	10642	933	33	2	3657	2	NPC1	18	21152054	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	14159373	21152054	56925194	334	53816										
DSG2	0	genome.wustl.edu	37	chr18	29122609	29122609	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccattgtcaaagggcaacatGagatgtccgagatggatgga	13	7	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	18	29122609	29122609	G	C	SNP	DSG2	ENST00000261590	human	ensembl	69_37n	1	known	missense	c.2128	p.E710Q	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	76	0	0	36	5	12.2	-	-	-	C	29122609	G	C	29122609	3	2	617	1	0	0	0	0	1	0	0	0	4812	1291	45	2	2182	2	DSG2	18	29122609	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7970555	29122609	48954639	335	53817										
ARHGEF18	0	genome.wustl.edu	37	chr19	7511959	7511959	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aaaatggggagagaatgaaaGaaaagtacggtgtgttttgt	14	1	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	7511959	7511959	G	C	SNP	ARHGEF18	ENST00000359920	human	ensembl	69_37n	1	known	missense	c.1078	p.E360Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	78	0	0	53	13	19.7	-	-	-	C	7511959	G	C	7511959	3	2	617	1	0	0	0	0	1	0	0	0	903	943	33	2	1096	2	ARHGEF18	19	7511959	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09		7511959	51617024	336	53818										
MUC16	0	genome.wustl.edu	37	chr19	9049091	9049091	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tcattgaaggtgtggtgtctGatttactatggaaaaaaatg	11	3	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	9049091	9049091	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	nonsense	c.32540	p.S10847*	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	75	0	0	48	9	15.52	-	-	-	C	9049091	G	C	9049091	4	2	617	1	0	0	0	0	0	1	0	0	10045	1294	45	2	11303	2	MUC16	19	9049091	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1537132	9049091	50079892	337	53819										
ZNF431	0	genome.wustl.edu	37	chr19	21365779	21365779	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	acctaagtcaacataaaagaAttcatattagagagaattct	5	6	3	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	21365779	21365779	A	G	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.673	p.I225V	0.899	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	37	0	0	9	6	40	-	-	-	G	21365779	A	G	21365779	3	3	617	1	0	0	0	0	1	0	0	0	18001	101	4	5	691	5	ZNF431	19	21365779	Missense_Mutation	SNP	A	TCGA-BH-A2L8-01A-11D-A18P-09	12316688	21365779	37763204	338	53820										
ZNF792	0	genome.wustl.edu	37	chr19	35449354	35449354	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcaccagtgtgaactcgctGatgtttcatgaggtcagagc	11	10	3	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	35449354	35449354	G	A	SNP	ZNF792	ENST00000404801	human	ensembl	69_37n	-1	known	nonsense	c.1405	p.Q469*	0.944	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	47	0	0	42	8	16	-	-	-	A	35449354	G	A	35449354	4	1	617	1	0	0	0	0	0	1	0	0	18257	1299	45	2	497	2	ZNF792	19	35449354	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	14083575	35449354	23679629	339	53821										
CD22	0	genome.wustl.edu	37	chr19	35827138	35827138	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gtcttcacccggagcgagctCaagttctccccacagtggag	11	14	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	35827138	35827138	C	G	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	silent	c.612	p.L204	0.769	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	47	0	0	48	9	15.79	-	-	-	G	35827138	C	G	35827138	2	3	617	1	0	0	0	0	0	0	0	1	3014	813	29	2		2	CD22	19	35827138	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	377784	35827138	23301845	340	53822										
ZNF790	0	genome.wustl.edu	37	chr19	37314208	37314208	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgggcaaggtcctcttgtctCatccctcaaaatcttccagg	8	13	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	37314208	37314208	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.208	p.E70K	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	68	0	0	40	8	16.67	-	-	-	T	37314208	C	T	37314208	3	4	617	1	0	0	0	0	1	0	0	0	18255	835	29	2	1710	2	ZNF790	19	37314208	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1487070	37314208	21814775	341	53823										
CAPN12	0	genome.wustl.edu	37	chr19	39225014	39225014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcccgatctctctgggggtgGaggtatgggccctggctaca	16	11	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	39225014	39225014	G	C	SNP	CAPN12	ENST00000328867	human	ensembl	69_37n	-1	known	missense	c.1760	p.S587C	0.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472	30	0	0	13	7	35	-	-	-	C	39225014	G	C	39225014	3	2	617	1	0	0	0	0	1	0	0	0	2650	1174	41	2	423	2	CAPN12	19	39225014	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1910806	39225014	19903969	342	53824										
FCGBP	0	genome.wustl.edu	37	chr19	40366143	40366143	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggccctgaacttggcaggcGtccagcaagcagccctggaa	13	13	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	40366143	40366143	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.14091	p.D4697	0.988	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	29	0	0	13	7	35	-	-	-	A	40366143	G	A	40366143	2	1	617	1	0	0	0	0	0	0	0	1	5824	1136	40	1		1	FCGBP	19	40366143	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1141129	40366143	18762840	343	53825										
LIN7B	0	genome.wustl.edu	37	chr19	49619635	49619635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gggtggcaaagagcaaaactCgcccatctacatctcccggg	11	13	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	49619635	49619635	C	T	SNP	LIN7B	ENST00000221459	human	ensembl	69_37n	1	known	missense	c.344	p.S115L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Lin-7_homologue,pfscan_PDZ	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7B	HGNC	ENSG00000104863	37	0	0	23	5	17.86	-	-	-	T	49619635	C	T	49619635	3	4	617	1	0	0	0	0	1	0	0	0	8867	893	31	1	358	1	LIN7B	19	49619635	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	9253492	49619635	9509348	344	53826										
ZNF415	0	genome.wustl.edu	37	chr19	53612984	53612984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tagtcactttgttgcaatttCtttcatcatctctccactga	4	11	5	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	19	53612984	53612984	C	G	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	missense	c.458	p.R153T	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	74	0	0	70	23	24.73	-	-	-	G	53612984	C	G	53612984	3	3	617	1	0	0	0	0	1	0	0	0	17988	913	32	2	1357	2	ZNF415	19	53612984	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3993349	53612984	5515999	345	53827										
GGTLC1	0	genome.wustl.edu	37	chr20	23966755	23966755	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgaggggggtaccccaaactCgttggtgatgctggtagagc	16	8	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	20	23966755	23966755	C	A	SNP	GGTLC1	ENST00000278765	human	ensembl	69_37n	-1	known	nonsense	c.262	p.E88*	0.999	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435	77	0	0	57	8	12.31	-	-	-	A	23966755	C	A	23966755	4	1	617	1	0	0	0	0	0	1	0	0	6417	893	31	3	431	3	GGTLC1	20	23966755	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		23966755	39058765	346	53828										
PDRG1	0	genome.wustl.edu	37	chr20	30538178	30538178	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	attctgattccttttagtgtCcaggtccacaatctgaaaac	6	10	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	20	30538178	30538178	C	G	SNP	PDRG1	ENST00000202017	human	ensembl	69_37n	-1	known	missense	c.100	p.D34H	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356	44	0	0	32	9	21.95	-	-	-	G	30538178	C	G	30538178	3	3	617	1	0	0	0	0	1	0	0	0	11763	855	30	2	317	2	PDRG1	20	30538178	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	6571423	30538178	32487342	347	53829										
RBM39	0	genome.wustl.edu	37	chr20	34293154	34293154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagatgaaaatacctgagctGaatttttgtcaacataaata	6	5	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	20	34293154	34293154	G	A	SNP	RBM39	ENST00000253363	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469L	1.000	smart_RRM_dom_euk,smart_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051	73	0	0	82	17	17.17	-	-	-	A	34293154	G	A	34293154	3	1	617	1	0	0	0	0	1	0	0	0	13216	1294	45	2	198	2	RBM39	20	34293154	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3754976	34293154	28732366	348	53830										
TOMM34	0	genome.wustl.edu	37	chr20	43572097	43572097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccaggatttttttttaccttGagtgctttgtgggcttgagc	11	7	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	20	43572097	43572097	G	A	SNP	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	silent	c.822	p.L274	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	106	0	0	78	16	17.02	-	-	-	A	43572097	G	A	43572097	2	1	617	1	0	0	0	0	0	0	0	1	16452	1277	45	2		2	TOMM34	20	43572097	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	9278943	43572097	19453423	349	53831										
USP25	0	genome.wustl.edu	37	chr21	17199349	17199349	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	actgccaagcacatcaccttCatcagttgctgccatttcat	5	14	4	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	21	17199349	17199349	C	T	SNP	USP25	ENST00000400183	human	ensembl	69_37n	1	known	missense	c.1520	p.S507L	0.344	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19	-	no_errors	USP25	HGNC	ENSG00000155313	46	0	0	53	12	18.46	-	-	-	T	17199349	C	T	17199349	3	4	617	1	0	0	0	0	1	0	0	0	17153	838	29	2	1574	2	USP25	21	17199349	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		17199349	30930546	350	53832										
CCT8	0	genome.wustl.edu	37	chr21	30428810	30428810	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccaatttcaatcattttggtCatcatcccagtctttcttcc	3	13	6	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	21	30428810	30428810	C	G	SNP	CCT8	ENST00000286788	human	ensembl	69_37n	-1	known	missense	c.1633	p.D545H	1.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	-	no_errors	CCT8	HGNC	ENSG00000156261	67	0	0	47	6	10.91	-	-	-	G	30428810	C	G	30428810	3	3	617	1	0	0	0	0	1	0	0	0	2989	826	29	2	17	2	CCT8	21	30428810	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13229461	30428810	17701085	351	53833										
MRAP	0	genome.wustl.edu	37	chr21	33679048	33679048	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggtccgcctccccgcagatGaggtgggtaagaaggggtgt	17	9	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	21	33679048	33679048	G	A	SNP	MRAP	ENST00000303645	human	ensembl	69_37n	1	known	missense	c.204	p.M68I	0.004	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262	55	0	0	61	15	19.74	-	-	-	A	33679048	G	A	33679048	3	1	617	1	0	0	0	0	1	0	0	0	9825	1290	45	2	210	2	MRAP	21	33679048	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3250238	33679048	14450847	352	53834										
TRPM2	0	genome.wustl.edu	37	chr21	45811159	45811159	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caatgcttgctctcagccttCagatctgcaccccacgatga	7	15	3	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	21	45811159	45811159	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.1445	p.S482L	1.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	18	0	0	16	6	26.09	-	-	-	T	45811159	C	T	45811159	3	4	617	1	0	0	0	0	1	0	0	0	16682	838	29	2	1487	2	TRPM2	21	45811159	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	12132111	45811159	2318736	353	53835										
HIRA	0	genome.wustl.edu	37	chr22	19346930	19346930	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcccttcccggttgcacttCaggcggctcagcttcacgcc	9	17	3	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	19346930	19346930	C	T	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	silent	c.2163	p.L721	0.995	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	93	0	0	92	21	18.58	-	-	-	T	19346930	C	T	19346930	2	4	617	1	0	0	0	0	0	0	0	1	7171	813	29	2		2	HIRA	22	19346930	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		19346930	31957636	354	53836										
MED15	0	genome.wustl.edu	37	chr22	20939276	20939276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cgcacattcgttccagccatGaccgccattcacggcccacc	7	19	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	20939276	20939276	G	C	SNP	MED15	ENST00000263205	human	ensembl	69_37n	1	known	missense	c.1938	p.M646I	1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	64	0	0	54	20	27.03	-	-	-	C	20939276	G	C	20939276	3	2	617	1	0	0	0	0	1	0	0	0	9504	1290	45	2	1996	2	MED15	22	20939276	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1592346	20939276	30365290	355	53837										
SNRPD3	0	genome.wustl.edu	37	chr22	24967993	24967993	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttttttctttcaggttatctGagttcattggagtgggtgct	11	5	4	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	24967993	24967993	G	A	SNP	SNRPD3	ENST00000402849	human	ensembl	69_37n	1	known	silent	c.327	p.L109	0.455	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD3	HGNC	ENSG00000100028	21	0	0	15	10	40	-	-	-	A	24967993	G	A	24967993	2	1	617	1	0	0	0	0	0	0	0	1	14955	1305	45	2		2	SNRPD3	22	24967993	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4028717	24967993	26336573	356	53838										
AP1B1	0	genome.wustl.edu	37	chr22	29727487	29727487	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgcagtgggtacaaggtgctGaagtagaagacatcgatgtt	14	5	0	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	29727487	29727487	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.2475	p.F825	1.000	superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	54	0	0	52	10	16.13	-	-	-	A	29727487	G	A	29727487	2	1	617	1	0	0	0	0	0	0	0	1	732	1281	45	2		2	AP1B1	22	29727487	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4759494	29727487	21577079	357	53839										
CCDC157	0	genome.wustl.edu	37	chr22	30768209	30768209	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gagggcgctggccagcaggtCtgctgggccagcacggagct	18	12	1	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	30768209	30768209	C	G	SNP	CCDC157	ENST00000338306	human	ensembl	69_37n	1	known	silent	c.1269	p.V423	0.984	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860	23	0	0	15	9	37.5	-	-	-	G	30768209	C	G	30768209	2	3	617	1	0	0	0	0	0	0	0	1	2815	900	32	2		2	CCDC157	22	30768209	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1040722	30768209	20536357	358	53840										
DEPDC5	0	genome.wustl.edu	37	chr22	32239673	32239673	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atccactacacctacagcctCtgtccttcccactcagactc	3	19	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	32239673	32239673	C	G	SNP	DEPDC5	ENST00000433147	human	ensembl	69_37n	1	putative	missense	c.868	p.L290V	0.993	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DEPDC5	HGNC	ENSG00000100150	62	0	0	47	13	21.67	-	-	-	G	32239673	C	G	32239673	3	3	617	1	0	0	0	0	1	0	0	0	4478	900	32	2	2777	2	DEPDC5	22	32239673	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1471464	32239673	19064893	359	53841										
LGALS1	0	genome.wustl.edu	37	chr22	38074659	38074659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tccagcctggaagtgttgcaGaggtgggctgcagaccggaa	16	9	0	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	38074659	38074659	G	C	SNP	LGALS1	ENST00000215909	human	ensembl	69_37n	1	known	missense	c.259	p.E87Q	0.971	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS1	HGNC	ENSG00000100097	16	0	0	10	4	28.57	-	-	-	C	38074659	G	C	38074659	3	2	617	1	0	0	0	0	1	0	0	0	8792	943	33	2	269	2	LGALS1	22	38074659	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	5834986	38074659	13229907	360	53842										
POLDIP3	0	genome.wustl.edu	37	chr22	42981866	42981866	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaggacttgaagagtgccttCaggatggtgtcagggtccac	15	8	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	42981866	42981866	C	T	SNP	POLDIP3	ENST00000252115	human	ensembl	69_37n	-1	known	silent	c.1197	p.L399	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	POLDIP3	HGNC	ENSG00000100227	42	0	0	47	10	17.54	-	-	-	T	42981866	C	T	42981866	2	4	617	1	0	0	0	0	0	0	0	1	12269	813	29	2		2	POLDIP3	22	42981866	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	4907207	42981866	8322700	361	53843										
EFCAB6	0	genome.wustl.edu	37	chr22	44079664	44079664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atgctttcttcagtgacgcaGagtgatcttcagtgtgtcta	10	8	5	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	44079664	44079664	G	C	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.1214	p.S405C	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	126	0	0	132	18	12	-	-	-	C	44079664	G	C	44079664	3	2	617	1	0	0	0	0	1	0	0	0	4974	942	33	2	3375	2	EFCAB6	22	44079664	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1097798	44079664	7224902	362	53844										
TRMU	0	genome.wustl.edu	37	chr22	46746264	46746264	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	caggtttcccaggatgccctGaggagaaccatcttccctct	9	14	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	46746264	46746264	G	A	SNP	TRMU	ENST00000290846	human	ensembl	69_37n	1	known	silent	c.555	p.L185	0.973	pfam_tRNA-specific_2-thiouridylase,tigrfam_tRNA-specific_2-thiouridylase	pfam_tRNA-specific_2-thiouridylase,pfam_ThiI_C_dom,pfam_NAD/GMP_synthase,tigrfam_tRNA-specific_2-thiouridylase	-	no_errors	TRMU	HGNC	ENSG00000100416	51	0	0	42	10	19.23	-	-	-	A	46746264	G	A	46746264	2	1	617	1	0	0	0	0	0	0	0	1	16667	1277	45	2		2	TRMU	22	46746264	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2666600	46746264	4558302	363	53845										
CERK	0	genome.wustl.edu	37	chr22	47116889	47116889	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ttcctcaacggcgatgatctCagatacaggcacagagcagg	11	11	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	47116889	47116889	C	G	SNP	CERK	ENST00000216264	human	ensembl	69_37n	-1	known	missense	c.166	p.E56Q	0.986	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422	52	0	0	62	7	10.14	-	-	-	G	47116889	C	G	47116889	3	3	617	1	0	0	0	0	1	0	0	0	3296	835	29	2	1495	2	CERK	22	47116889	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	370625	47116889	4187677	364	53846										
PLXNB2	0	genome.wustl.edu	37	chr22	50718176	50718176	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgatgtttgatggccttgaaGagcttgtacaggggctcccc	13	9	0	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	22	50718176	50718176	G	C	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	silent	c.4272	p.L1424	0.980	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	50	0	0	56	9	13.85	-	-	-	C	50718176	G	C	50718176	2	2	617	1	0	0	0	0	0	0	0	1	12198	929	33	2		2	PLXNB2	22	50718176	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	3601287	50718176	586390	365	53847										
RAI2	0	genome.wustl.edu	37	chrX	17819188	17819188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	catggagagatccagggcctCgttctcacttcccatcttaa	8	13	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	17819188	17819188	C	T	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.943	p.E315K	0.997	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	74	0	0	51	11	17.74	-	-	-	T	17819188	C	T	17819188	3	4	617	1	0	0	0	0	1	0	0	0	13092	893	31	1	653	1	RAI2	23	17819188	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09		17819188	137451372	366	53848										
PHKA2	0	genome.wustl.edu	37	chrX	18954233	18954233	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	atcccattcttgcctctgatGagtattccctccagggcctc	7	15	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	18954233	18954233	G	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	silent	c.1077	p.L359	0.952	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	78	0	0	55	18	24.66	-	-	-	A	18954233	G	A	18954233	2	1	617	1	0	0	0	0	0	0	0	1	11918	1277	45	2		2	PHKA2	23	18954233	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	1135045	18954233	136316327	367	53849										
EIF1AX	0	genome.wustl.edu	37	chrX	20150342	20150342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgccttcagacttctagcttCgtctgcattgtattttaaaa	6	9	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	20150342	20150342	C	T	SNP	EIF1AX	ENST00000379607	human	ensembl	69_37n	-1	known	missense	c.295	p.E99K	1.000	superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,tigrfam_TIF_eIF-1A	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	-	no_errors	EIF1AX	HGNC	ENSG00000173674	53	0	0	61	10	14.08	-	-	-	T	20150342	C	T	20150342	3	4	617	1	0	0	0	0	1	0	0	0	5027	893	31	1	151	1	EIF1AX	23	20150342	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1196109	20150342	135120218	368	53850										
POLA1	0	genome.wustl.edu	37	chrX	24735567	24735567	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agtgagccagcagaggaagtGaaacaagaggcggattctgg	16	6	1	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	24735567	24735567	G	C	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	silent	c.867	p.V289	0.173	tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	93	0	0	67	13	16.25	-	-	-	C	24735567	G	C	24735567	2	2	617	1	0	0	0	0	0	0	0	1	12261	1277	45	2		2	POLA1	23	24735567	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	4585225	24735567	130534993	369	53851										
SYTL5	0	genome.wustl.edu	37	chrX	37969613	37969613	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agctggaaacaagaactctgCagctctcagtctggcactat	9	11	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	37969613	37969613	C	T	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	nonsense	c.1540	p.Q514*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	73	0	0	55	19	25.68	-	-	-	T	37969613	C	T	37969613	4	4	617	1	0	0	0	0	0	1	0	0	15578	711	25	4	1590	4	SYTL5	23	37969613	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	13234046	37969613	117300947	370	53852										
HUWE1	0	genome.wustl.edu	37	chrX	53570803	53570803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ccacaggcatcatgctaaccGttgctgcttgttgctgtctc	9	13	2	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	53570803	53570803	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.11378	p.T3793M	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	40	0	0	63	9	12.5	-	-	-	A	53570803	G	A	53570803	3	1	617	1	0	0	0	0	1	0	0	0	7515	1159	40	1	1794	1	HUWE1	23	53570803	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	15601190	53570803	101699757	371	53853										
PAGE2B	0	genome.wustl.edu	37	chrX	55102533	55102533	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aagaggaaatgaccaagagtCttcccagccagttggatctg	11	9	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	55102533	55102533	C	T	SNP	PAGE2B	ENST00000374971	human	ensembl	69_37n	1	known	missense	c.59	p.S20F	0.002	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE2B	HGNC	ENSG00000238269	151	1	0.66	95	22	18.8	-	-	-	T	55102533	C	T	55102533	3	4	617	1	0	0	0	0	1	0	0	0	11464	913	32	2	61	2	PAGE2B	23	55102533	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1531730	55102533	100168027	372	53854										
AR	0	genome.wustl.edu	37	chrX	66931473	66931473	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcagccttgctctctagcctCaatgaactgggagagagaca	11	11	2	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	66931473	66931473	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	silent	c.2115	p.L705	0.999	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	59	0	0	44	8	15.38	-	-	-	T	66931473	C	T	66931473	2	4	617	1	0	0	0	0	0	0	0	1	838	813	29	2		2	AR	23	66931473	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	11828940	66931473	88339087	373	53855										
AWAT2	0	genome.wustl.edu	37	chrX	69261801	69261801	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctcaatcttgggcattggtaGaggctccccgactgccaggg	13	12	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	69261801	69261801	G	A	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	silent	c.859	p.L287	0.965	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	60	0	0	59	14	19.18	-	-	-	A	69261801	G	A	69261801	2	1	617	1	0	0	0	0	0	0	0	1	1239	933	33	2		2	AWAT2	23	69261801	Silent	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2330328	69261801	86008759	374	53856										
KIF4A	0	genome.wustl.edu	37	chrX	69563755	69563755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tggatcttcaaaagctagtgGagactttggaagaccaggaa	12	6	2	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	69563755	69563755	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.1354	p.E452K	0.972	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	51	0	0	54	15	21.74	-	-	-	A	69563755	G	A	69563755	3	1	617	1	0	0	0	0	1	0	0	0	8355	1175	41	2	1400	2	KIF4A	23	69563755	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	301954	69563755	85706805	375	53857										
ZMYM3	0	genome.wustl.edu	37	chrX	70462260	70462260	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gaggtgctcctcctccactcGagagaacaccgtatctacaa	8	14	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	70462260	70462260	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	nonsense	c.3568	p.R1190*	1.000	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	22	0	0	18	6	25	-	-	-	A	70462260	G	A	70462260	4	1	617	1	0	0	0	0	0	1	0	0	17797	1066	37	1	562	1	ZMYM3	23	70462260	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	898505	70462260	84808300	376	53858										
P2RY10	0	genome.wustl.edu	37	chrX	78216688	78216688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tacctggaaaactactatatCcttgagacagccaccaatgg	7	11	0	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	78216688	78216688	C	T	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.671	p.S224F	0.676	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	83	0	0	61	12	16.22	-	-	-	T	78216688	C	T	78216688	3	4	617	1	0	0	0	0	1	0	0	0	11420	855	30	2	673	2	P2RY10	23	78216688	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	7754428	78216688	77053872	377	53859										
ARMCX3	0	genome.wustl.edu	37	chrX	100880812	100880812	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gccatgactagggaactgctCagggcccaagtaccatcttc	10	13	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	100880812	100880812	C	T	SNP	ARMCX3	ENST00000341189	human	ensembl	69_37n	1	known	silent	c.843	p.L281	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX3	HGNC	ENSG00000102401	27	0	0	16	4	20	-	-	-	T	100880812	C	T	100880812	2	4	617	1	0	0	0	0	0	0	0	1	965	813	29	2		2	ARMCX3	23	100880812	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	22664124	100880812	54389748	378	53860										
RGAG1	0	genome.wustl.edu	37	chrX	109696070	109696070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	catgaagtccatgaccgctgGagggatgcagatgaattccc	12	10	0	4			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	109696070	109696070	G	A	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.2225	p.G742E	0.878	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	77	0	0	71	17	19.32	-	-	-	A	109696070	G	A	109696070	3	1	617	1	0	0	0	0	1	0	0	0	13357	1174	41	2	2227	2	RGAG1	23	109696070	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	8815258	109696070	45574490	379	53861										
KLHL13	0	genome.wustl.edu	37	chrX	117054217	117054217	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	ctacctgtgaacatagccttGaagtaatcactagcagatgc	8	10	1	3			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	117054217	117054217	G	C	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.366	p.F122L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	58	0	0	49	14	22.22	-	-	-	C	117054217	G	C	117054217	3	2	617	1	0	0	0	0	1	0	0	0	8422	1281	45	2	1630	2	KLHL13	23	117054217	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	7358147	117054217	38216343	380	53862										
RHOXF1	0	genome.wustl.edu	37	chrX	119249529	119249529	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cggctcctccggcgggggctGcggctgctgccgaggctcct	17	16	0	0			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	119249529	119249529	G	A	SNP	RHOXF1	ENST00000217999	human	ensembl	69_37n	-1	known	nonsense	c.244	p.Q82*	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	RHOXF1	HGNC	ENSG00000101883	25	0	0	5	5	50	-	-	-	A	119249529	G	A	119249529	4	1	617	1	0	0	0	0	0	1	0	0	13431	1328	46	4	322	4	RHOXF1	23	119249529	Nonsense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	2195312	119249529	36021031	381	53863										
AIFM1	0	genome.wustl.edu	37	chrX	129290551	129290551	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgtcatctggagttctagagGaacatgccatcgctggaaca	11	9	3	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	129290551	129290551	G	C	SNP	AIFM1	ENST00000287295	human	ensembl	69_37n	-1	known	missense	c.133	p.P45A	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709	46	0	0	52	11	17.46	-	-	-	C	129290551	G	C	129290551	3	2	617	1	0	0	0	0	1	0	0	0	426	1174	41	2	1915	2	AIFM1	23	129290551	Missense_Mutation	SNP	G	TCGA-BH-A2L8-01A-11D-A18P-09	10041022	129290551	25980009	382	53864										
ZNF280C	0	genome.wustl.edu	37	chrX	129380918	129380918	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	tgagtttcttctactttcttCtgccatggctctagctcttc	6	12	6	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	129380918	129380918	C	T	SNP	ZNF280C	ENST00000370978	human	ensembl	69_37n	-1	known	silent	c.93	p.Q31	0.997	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277	169	0	0	178	29	14.01	-	-	-	T	129380918	C	T	129380918	2	4	617	1	0	0	0	0	0	0	0	1	17912	912	32	2		2	ZNF280C	23	129380918	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	90367	129380918	25889642	383	53865										
AFF2	0	genome.wustl.edu	37	chrX	148037888	148037888	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	agcaacaacaacttatccatCagtaatgaagagccaacatt	5	10	1	2			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	148037888	148037888	C	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	silent	c.2313	p.I771	0.341	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	70	0	0	49	12	19.67	-	-	-	T	148037888	C	T	148037888	2	4	617	1	0	0	0	0	0	0	0	1	357	816	29	2		2	AFF2	23	148037888	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	18656970	148037888	7232672	384	53866										
MAMLD1	0	genome.wustl.edu	37	chrX	149639115	149639115	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	aacagccgcagttcggccctCagagctccattcttgccaac	8	16	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	149639115	149639115	C	T	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	nonsense	c.1195	p.Q399*	0.360	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	14	0	0	6	8	57.14	-	-	-	T	149639115	C	T	149639115	4	4	617	1	0	0	0	0	0	1	0	0	9279	827	29	2	1280	2	MAMLD1	23	149639115	Nonsense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	1601227	149639115	5631445	385	53867										
FLNA	0	genome.wustl.edu	37	chrX	153590634	153590634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	gcgactgaggccagggccctCggccttcaccttactggcgt	13	15	1	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	153590634	153590634	C	T	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.2632	p.E878K	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	33	0	0	27	12	30.77	-	-	-	T	153590634	C	T	153590634	3	4	617	1	0	0	0	0	1	0	0	0	5979	893	31	1	5435	1	FLNA	23	153590634	Missense_Mutation	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	3951519	153590634	1679926	386	53868										
F8	0	genome.wustl.edu	37	chrX	154065914	154065914	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.702842377260982	272	1.31854846851543e-118	4.32940019665683	4.76216814159292	4.02727917849391	0.0344433966465409	0.286380384110257	209	cagcccagaacctccatcctCagggcaatctggtgcaccca	8	17	2	1			TCGA-BH-A2L8-01A-11D-A18P-09	TCGA-BH-A2L8-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce4179d3-b31d-4242-8ec1-f6785f9af2e1	b0e8676c-6f2d-4691-96c5-b323dded9687	X	154065914	154065914	C	G	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.7014	p.L2338	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	67	0	0	37	13	26	-	-	-	G	154065914	C	G	154065914	2	3	617	1	0	0	0	0	0	0	0	1	5387	813	29	2		2	F8	23	154065914	Silent	SNP	C	TCGA-BH-A2L8-01A-11D-A18P-09	475280	154065914	1204646	387	53869										
CCDC18	0	genome.wustl.edu	37	chr1	93698055	93698055	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cttctgagcaaaacgttattCtacagcatactcttcagcaa	5	11	4	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	1	93698055	93698055	C	A	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	missense	c.2719	p.L907I	0.554	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	23	0	0	26	4	13.33	-	-	-	A	93698055	C	A	93698055	3	1	618	1	0	0	0	0	1	0	0	0	2820	912	32	2	2789	2	CCDC18	1	93698055	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		93698055	155552566	1	53870										
SERPINC1	0	genome.wustl.edu	37	chr1	173878836	173878836	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	attcatccagccactcttgcAgcacctctggggtgagttcc	9	14	3	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	1	173878836	173878836	A	C	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.1007	p.L336R	0.997	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	43	0	0	80	15	15.79	-	-	-	C	173878836	A	C	173878836	3	2	618	1	0	0	0	0	1	0	0	0	14197	188	7	5	399	5	SERPINC1	1	173878836	Missense_Mutation	SNP	A	TCGA-BH-A42T-01A-11D-A243-09	80180781	173878836	75371785	2	53871										
KIF21B	0	genome.wustl.edu	37	chr1	200977992	200977992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	aatgcccccaaagaggtgtgCgatggccctcgggatgatgc	14	11	0	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	1	200977992	200977992	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.352	p.A118T	0.013	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	26	0	0	45	24	34.78	-	-	-	T	200977992	C	T	200977992	3	4	618	1	0	0	0	0	1	0	0	0	8341	768	27	1	4650	1	KIF21B	1	200977992	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09	27099156	200977992	48272629	3	53872										
ARID4B	0	genome.wustl.edu	37	chr1	235345310	235345310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cactgggtgaacaactctccTcttcagccacagtctgcagt	8	14	4	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	1	235345310	235345310	T	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.2924	p.E975G	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	75	0	0	74	58	43.94	-	-	-	C	235345310	T	C	235345310	3	2	618	1	0	0	0	0	1	0	0	0	922	1551	54	5	1034	5	ARID4B	1	235345310	Missense_Mutation	SNP	T	TCGA-BH-A42T-01A-11D-A243-09	34367318	235345310	13905311	4	53873										
HECW2	0	genome.wustl.edu	37	chr2	197298078	197298078	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	gctctggaggttctctgggcTcaatgtgtaccgcatctggg	14	10	4	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	2	197298078	197298078	T	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.70	p.S24C	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	39	0	0	35	18	33.96	-	-	-	A	197298078	T	A	197298078	3	1	618	1	0	0	0	0	1	0	0	0	7094	1551	54	5	4760	5	HECW2	2	197298078	Missense_Mutation	SNP	T	TCGA-BH-A42T-01A-11D-A243-09		197298078	45901295	5	53874										
ZBTB38	0	genome.wustl.edu	37	chr3	141164738	141164738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	acgaaaactcaaatcccttgGagaatcaacatttcattggt	6	9	3	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	3	141164738	141164738	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	missense	c.3511	p.E1171K	0.999	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	17	0	0	16	16	50	-	-	-	A	141164738	G	A	141164738	3	1	618	1	0	0	0	0	1	0	0	0	17635	1175	41	2	3510	2	ZBTB38	3	141164738	Missense_Mutation	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		141164738	56857692	6	53875										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	18	0	0	10	13	56.52	-	-	-	G	178952085	A	G	178952085	3	3	618	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BH-A42T-01A-11D-A243-09	37787347	178952085	19070345	7	53876										
FER	0	genome.wustl.edu	37	chr5	108294990	108294990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	acttatagatcatcactataCaacaaaacaggtcatcacta	3	10	4	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	5	108294990	108294990	C	A	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	missense	c.1598	p.T533K	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,smart_SH2,pfscan_SH2,prints_SH2	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	20	0	0	27	10	27.03	-	-	-	A	108294990	C	A	108294990	3	1	618	1	0	0	0	0	1	0	0	0	5859	478	17	4	1640	4	FER	5	108294990	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		108294990	72620270	8	53877										
CDYL	0	genome.wustl.edu	37	chr6	4943862	4943862	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ccattggtctaggagcatctAtattgcctctttgcgatgtg	10	9	3	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	6	4943862	4943862	A	G	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	missense	c.1366	p.I456V	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	37	0	0	32	17	34.69	-	-	-	G	4943862	A	G	4943862	3	3	618	1	0	0	0	0	1	0	0	0	3214	449	16	5	1222	5	CDYL	6	4943862	Missense_Mutation	SNP	A	TCGA-BH-A42T-01A-11D-A243-09		4943862	166171205	9	53878										
MOCS1	0	genome.wustl.edu	37	chr6	39874404	39874404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	acagagggatcagctggctgGtcaccttggctgcctggact	14	11	2	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	6	39874404	39874404	G	A	SNP	MOCS1	ENST00000340692	human	ensembl	69_37n	-1	known	missense	c.1640	p.T547I	1.000	pfam_Mopterin_CF_biosynth-C_dom,superfamily_Mopterin_CF_biosynth-C_dom,tigrfam_Mo_CF_biosynth-C	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615	33	0	0	26	20	43.48	-	-	-	A	39874404	G	A	39874404	3	1	618	1	0	0	0	0	1	0	0	0	9762	1276	44	4		4	MOCS1	6	39874404	Missense_Mutation	SNP	G	TCGA-BH-A42T-01A-11D-A243-09	34930542	39874404	131240663	10	53879										
LTV1	0	genome.wustl.edu	37	chr6	144178937	144178937	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tgggaagatgtggatgatgaGaagggagatagcaatgatga	17	1	0	6			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	6	144178937	144178937	G	A	SNP	LTV1	ENST00000367576	human	ensembl	69_37n	1	known	silent	c.588	p.E196	0.002	pfam_LTV	pfam_LTV	-	no_errors	LTV1	HGNC	ENSG00000135521	56	0	0	47	16	25.4	-	-	-	A	144178937	G	A	144178937	2	1	618	1	0	0	0	0	0	0	0	1	9147	933	33	2		2	LTV1	6	144178937	Silent	SNP	G	TCGA-BH-A42T-01A-11D-A243-09	104304533	144178937	26936130	11	53880										
RMND1	0	genome.wustl.edu	37	chr6	151738413	151738413	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ttagaagtgcaaaatacgtaCcttaactcttcggccaatgc	7	10	1	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	6	151738413	151738413	C	A	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	splice_site	c.1200+1	e9+1	1.000	-	-	-	no_errors	RMND1	HGNC	ENSG00000155906	26	0	0	28	15	34.88	-	-	-	A	151738413	C	A	151738413	5	1	618	1	0	0	0	0	0	0	1	0	13482	521	18	4	160	4	RMND1	6	151738413	Splice_Site	SNP	C	TCGA-BH-A42T-01A-11D-A243-09	7559476	151738413	19376654	12	53881										
TBRG4	0	genome.wustl.edu	37	chr7	45145242	45145242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ccaggtgcttgtacttgagcTtccgcatgcgccagcggacc	12	14	0	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	7	45145242	45145242	T	C	SNP	TBRG4	ENST00000258770	human	ensembl	69_37n	-1	known	missense	c.533	p.K178R	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	TBRG4	HGNC	ENSG00000136270	20	0	0	32	10	23.81	-	-	-	C	45145242	T	C	45145242	3	2	618	1	0	0	0	0	1	0	0	0	15744	1609	56	5	1398	5	TBRG4	7	45145242	Missense_Mutation	SNP	T	TCGA-BH-A42T-01A-11D-A243-09		45145242	113993421	13	53882										
ZAN	0	genome.wustl.edu	37	chr7	100349919	100349919	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ccaccatccccacagaaaaaTccaccatctccccagaaaaa	2	18	1	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	7	100349919	100349919	T	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.2191	p.S731P	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	18	0	0	19	6	24	-	-	-	C	100349919	T	C	100349919	3	2	618	1	0	0	0	0	1	0	0	0	17610	1435	50	5	2241	5	ZAN	7	100349919	Missense_Mutation	SNP	T	TCGA-BH-A42T-01A-11D-A243-09	55204677	100349919	58788744	14	53883										
RAB19	0	genome.wustl.edu	37	chr7	140111798	140111798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	gtccacgttcgagtccatccCtcactggattcatgagatag	9	12	2	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	7	140111798	140111798	C	G	SNP	RAB19	ENST00000275874	human	ensembl	69_37n	1	known	missense	c.467	p.P156R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB19	HGNC	ENSG00000146955	68	0	0	11	25	69.44	-	-	-	G	140111798	C	G	140111798	3	3	618	1	0	0	0	0	1	0	0	0	12987	681	24	4	332	4	RAB19	7	140111798	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09	39761879	140111798	19026865	15	53884										
TOX	0	genome.wustl.edu	37	chr8	59750755	59750755	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cctgagtatcacgaaagaatAacgcataggcagacacaggc	10	10	1	3			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	8	59750755	59750755	A	T	SNP	TOX	ENST00000361421	human	ensembl	69_37n	-1	known	nonsense	c.809	p.L270*	0.919	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX	HGNC	ENSG00000198846	48	0	0	46	18	28.12	-	-	-	T	59750755	A	T	59750755	4	4	618	1	0	0	0	0	0	1	0	0	16473	372	13	5	791	5	TOX	8	59750755	Nonsense_Mutation	SNP	A	TCGA-BH-A42T-01A-11D-A243-09		59750755	86613267	16	53885										
VPS13B	0	genome.wustl.edu	37	chr8	100880677	100880677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ggaggagctgctgagctggtGtcacagactggctatggtaa	16	7	1	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	8	100880677	100880677	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.11451	p.V3817	1.000	pfam_Autophagy-rel_C	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	37	0	0	28	26	48.15	-	-	-	A	100880677	G	A	100880677	2	1	618	1	0	0	0	0	0	0	0	1	17287	1364	48	4		4	VPS13B	8	100880677	Silent	SNP	G	TCGA-BH-A42T-01A-11D-A243-09	41129922	100880677	45483345	17	53886										
PLEC	0	genome.wustl.edu	37	chr8	145001204	145001204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cttcttggccggggaggccaCcggctcaagctgcgccttgt	14	14	2	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	8	145001204	145001204	C	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.4297	p.V1433L	0.957	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	16	0	0	24	16	40	-	-	-	A	145001204	C	A	145001204	3	1	618	1	0	0	0	0	1	0	0	0	12126	507	18	4	9773	4	PLEC	8	145001204	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09	44120527	145001204	1362818	18	53887										
SH2D3C	0	genome.wustl.edu	37	chr9	130511725	130511725	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tgacacagccttgcggctgcCcacatgatagcgcacgaggg	13	13	0	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	9	130511725	130511725	C	T	SNP	SH2D3C	ENST00000440630	human	ensembl	69_37n	-1	known	nonsense	c.414	p.W138*	1.000	smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH2D3C	HGNC	ENSG00000095370	38	0	0	17	23	57.5	-	-	-	T	130511725	C	T	130511725	4	4	618	1	0	0	0	0	0	1	0	0	14322	623	22	4	1710	4	SH2D3C	9	130511725	Nonsense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		130511725	10701706	19	53888										
LOXL4	0	genome.wustl.edu	37	chr10	100021813	100021813	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tggggcccaagggcattggaGacagtttcagaaaggtagcc	15	8	1	2			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	10	100021813	100021813	G	A	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	silent	c.435	p.V145	0.067	NULL	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	15	0	0	14	8	36.36	-	-	-	A	100021813	G	A	100021813	2	1	618	1	0	0	0	0	0	0	0	1	8968	929	33	2		2	LOXL4	10	100021813	Silent	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		100021813	35512934	20	53889										
HELB	0	genome.wustl.edu	37	chr12	66698653	66698653	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tatcaagttcaaggatttccGtcttactttttgcagtctga	7	8	4	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	12	66698653	66698653	G	A	SNP	HELB	ENST00000247815	human	ensembl	69_37n	1	known	silent	c.330	p.P110	0.053	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	46	0	0	41	13	24.07	-	-	-	A	66698653	G	A	66698653	2	1	618	1	0	0	0	0	0	0	0	1	7096	1132	40	1		1	HELB	12	66698653	Silent	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		66698653	67153242	21	53890										
SPG20	0	genome.wustl.edu	37	chr13	36900603	36900603	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tctaaattgatcatttaaaaCcaaaatacaaaatattatct	1	6	3	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	13	36900603	36900603	C	G	SNP	SPG20	ENST00000495510	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SPG20	HGNC	ENSG00000133104	22	0	0	11	8	42.11	-	-	-	G	36900603	C	G	36900603	1	3	618	0	1	0	0	0	0	0	0	0	15133	522	18	4		4	SPG20	13	36900603	RNA	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		36900603	78269275	22	53891										
SOCS4	0	genome.wustl.edu	37	chr14	55510648	55510648	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tgatggataaatacgcagccGaagcactactggaaggaaaa	11	7	0	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	14	55510648	55510648	G	T	SNP	SOCS4	ENST00000339298	human	ensembl	69_37n	1	known	nonsense	c.889	p.E297*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008	34	0	0	20	3	13.04	-	-	-	T	55510648	G	T	55510648	4	4	618	1	0	0	0	0	0	1	0	0	15005	1059	37	3	891	3	SOCS4	14	55510648	Nonsense_Mutation	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		55510648	51838892	23	53892										
NRXN3	0	genome.wustl.edu	37	chr14	80328015	80328015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	tgtgcccacagcaaaccccaCggagccgggaatcagacggg	13	14	1	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	14	80328015	80328015	C	T	SNP	NRXN3	ENST00000335750	human	ensembl	69_37n	1	known	missense	c.2894	p.T965M	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	14	0	0	8	10	55.56	-	-	-	T	80328015	C	T	80328015	3	4	618	1	0	0	0	0	1	0	0	0	10740	536	19	1	3306	1	NRXN3	14	80328015	Missense_Mutation	SNP	C	TCGA-BH-A42T-01A-11D-A243-09	24817367	80328015	27021525	24	53893										
IGF1R	0	genome.wustl.edu	37	chr15	99500587	99500587	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ctggtcctccgcgccagcttCgacgagagacagccttacgc	11	16	0	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	15	99500587	99500587	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	silent	c.4020	p.F1340	0.990	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	39	0	0	31	21	40.38	-	-	-	T	99500587	C	T	99500587	2	4	618	1	0	0	0	0	0	0	0	1	7625	883	31	1		1	IGF1R	15	99500587	Silent	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		99500587	3030805	25	53894										
ACSM5	0	genome.wustl.edu	37	chr16	20442562	20442562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	attgtggatgatgagggcaaCgtcctgcctcctggagaaga	14	8	0	4			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	16	20442562	20442562	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	silent	c.1227	p.N409	0.043	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	30	0	0	63	7	10	-	-	-	T	20442562	C	T	20442562	2	4	618	1	0	0	0	0	0	0	0	1	187	535	19	1		1	ACSM5	16	20442562	Silent	SNP	C	TCGA-BH-A42T-01A-11D-A243-09		20442562	69912191	26	53895										
SLC39A11	0	genome.wustl.edu	37	chr17	70643714	70643714	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cctttcccggggtccgaagcGtctcagccctagcccaggcc	11	18	1	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	17	70643714	70643714	G	A	SNP	SLC39A11	ENST00000579988	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC39A11	HGNC	ENSG00000133195	27	0	0	25	20	44.44	-	-	-	A	70643714	G	A	70643714	1	1	618	0	1	0	0	0	0	0	0	0	14703	1160	40	1		1	SLC39A11	17	70643714	RNA	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		70643714	10551496	27	53896										
MXRA7	0	genome.wustl.edu	37	chr17	74684401	74684401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cagcgcctgccctgtggtcaTggtcaaccagcaggtggggg	16	12	2	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	17	74684401	74684401	T	C	SNP	MXRA7	ENST00000592148	human	ensembl	69_37n	-1	putative	missense	c.329	p.H110R	0.000	NULL	NULL	-	no_errors	MXRA7	HGNC	ENSG00000182534	33	0	0	32	4	11.11	-	-	-	C	74684401	T	C	74684401	3	2	618	1	0	0	0	0	1	0	0	0	10076	1479	51	5		5	MXRA7	17	74684401	Missense_Mutation	SNP	T	TCGA-BH-A42T-01A-11D-A243-09	4040687	74684401	6510809	28	53897										
CCDC97	0	genome.wustl.edu	37	chr19	41822503	41822503	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	cagcagggtgaacccgacttGacagagcatgagaaagtggc	14	9	0	4			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	19	41822503	41822503	G	T	SNP	CCDC97	ENST00000269967	human	ensembl	69_37n	1	known	missense	c.261	p.L87F	0.998	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039	10	0	0	19	9	32.14	-	-	-	T	41822503	G	T	41822503	3	4	618	1	0	0	0	0	1	0	0	0	2902	1281	45	2	267	2	CCDC97	19	41822503	Missense_Mutation	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		41822503	17306480	29	53898										
ZNF324	0	genome.wustl.edu	37	chr19	58983309	58983309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	gcgagaagcccttcgtgtgtAcgcagtgtggccgcgccttc	14	13	0	1			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	19	58983309	58983309	A	G	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	missense	c.1450	p.T484A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	61	0	0	35	24	40.68	-	-	-	G	58983309	A	G	58983309	3	3	618	1	0	0	0	0	1	0	0	0	17940	391	14	5	1460	5	ZNF324	19	58983309	Missense_Mutation	SNP	A	TCGA-BH-A42T-01A-11D-A243-09	17160806	58983309	145674	30	53899										
PLTP	0	genome.wustl.edu	37	chr20	44534909	44534909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.960573476702509	0	1.10835401157982	0.428571428571429	1	0	ccagcccaagcagctcacccGgaagtccatgtccaggttgc	10	16	1	0			TCGA-BH-A42T-01A-11D-A243-09	TCGA-BH-A42T-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d13900dd-7b11-4eda-80be-39432a8ef6fd	183475fd-fef3-42f3-aeb4-594394187c24	20	44534909	44534909	G	A	SNP	PLTP	ENST00000542937	human	ensembl	69_37n	-1	known	missense	c.763	p.R255W	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	16	0	0	25	15	37.5	-	-	-	A	44534909	G	A	44534909	3	1	618	1	0	0	0	0	1	0	0	0	12188	1115	39	1	814	1	PLTP	20	44534909	Missense_Mutation	SNP	G	TCGA-BH-A42T-01A-11D-A243-09		44534909	18490611	31	53900										
TAS1R1	0	genome.wustl.edu	37	chr1	6637090	6637090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	ttccatcactgctgctttgaGtgtgtgccctgtggggctgg	14	10	1	1			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	1	6637090	6637090	G	A	SNP	TAS1R1	ENST00000415267	human	ensembl	69_37n	1	putative	missense	c.569	p.S190N	0.994	pfam_GPCR_3_9-Cys_dom	pfam_GPCR_3_9-Cys_dom,pfam_ANF_lig-bd_rcpt,prints_GPCR_3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAS1R1	HGNC	ENSG00000173662	98	0	0	62	7	10.14	-	-	-	A	6637090	G	A	6637090	3	1	619	1	0	0	0	0	1	0	0	0	15654	1020	36	4	1572	4	TAS1R1	1	6637090	Missense_Mutation	SNP	G	TCGA-BH-A42U-01A-12D-A243-09		6637090	242613531	1	53901										
DOCK10	0	genome.wustl.edu	37	chr2	225811581	225811581	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	tacagaactaaatctgtggaTttcttcttggtttactctcc	6	9	4	1			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	2	225811581	225811581	T	A	SNP	DOCK10	ENST00000409592	human	ensembl	69_37n	-1	known	missense	c.88	p.I30F	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	52	0	0	36	4	10	-	-	-	A	225811581	T	A	225811581	3	1	619	1	0	0	0	0	1	0	0	0	4720	1508	52	5		5	DOCK10	2	225811581	Missense_Mutation	SNP	T	TCGA-BH-A42U-01A-12D-A243-09		225811581	17387792	2	53902										
CLINT1	0	genome.wustl.edu	37	chr5	157230702	157230702	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	acagatcaacaaggtcaccaGatgacttgctgctaggcact	9	11	2	3			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	5	157230702	157230702	G	A	SNP	CLINT1	ENST00000296951	human	ensembl	69_37n	-1	known	missense	c.914	p.S305F	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	CLINT1	HGNC	ENSG00000113282	38	0	0	24	4	14.29	-	-	-	A	157230702	G	A	157230702	3	1	619	1	0	0	0	0	1	0	0	0	3561	942	33	2	929	2	CLINT1	5	157230702	Missense_Mutation	SNP	G	TCGA-BH-A42U-01A-12D-A243-09		157230702	23684558	3	53903										
HIST1H3B	0	genome.wustl.edu	37	chr6	26031895	26031895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	catttacgctctttctccgcGaatgcggcgagcgagctgga	12	12	2	0			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	6	26031895	26031895	G	A	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.394	p.R132C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	63	0	0	40	5	11.11	-	-	-	A	26031895	G	A	26031895	3	1	619	1	0	0	0	0	1	0	0	0	7207	1058	37	1	20	1	HIST1H3B	6	26031895	Missense_Mutation	SNP	G	TCGA-BH-A42U-01A-12D-A243-09		26031895	145083172	4	53904										
UBR2	0	genome.wustl.edu	37	chr6	42644577	42644577	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	aagaagaatcagcagttcttGctttgtataaaacacttcac	6	8	3	2			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	6	42644577	42644577	G	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.4444	p.A1482S	0.998	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	26	0	0	15	4	21.05	-	-	-	T	42644577	G	T	42644577	3	4	619	1	0	0	0	0	1	0	0	0	16999	1319	46	4	4748	4	UBR2	6	42644577	Missense_Mutation	SNP	G	TCGA-BH-A42U-01A-12D-A243-09	16612682	42644577	128470490	5	53905										
BACH2	0	genome.wustl.edu	37	chr6	90642501	90642501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	ctggatctgctcggggctctGgatgtctcggcaaacttcct	12	12	3	0			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	6	90642501	90642501	G	T	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.2152	p.Q718K	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	55	0	0	35	4	10.26	-	-	-	T	90642501	G	T	90642501	3	4	619	1	0	0	0	0	1	0	0	0	1288	1357	47	4	377	4	BACH2	6	90642501	Missense_Mutation	SNP	G	TCGA-BH-A42U-01A-12D-A243-09	47997924	90642501	80472566	6	53906										
ASB13	0	genome.wustl.edu	37	chr10	5680896	5680896	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	gattctgcgctaagtgctctActgtgagacatcacaggttg	11	9	3	1			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	10	5680896	5680896	A	G	SNP	ASB13	ENST00000479033	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB13	HGNC	ENSG00000196372	12	0	0	3	6	66.67	-	-	-	G	5680896	A	G	5680896	1	3	619	0	1	0	0	0	0	0	0	0	1021	406	14	5		5	ASB13	10	5680896	RNA	SNP	A	TCGA-BH-A42U-01A-12D-A243-09		5680896	129853851	7	53907			1	94		2	2	19	N	T_A	5.23309e-06
ASB13	0	genome.wustl.edu	37	chr10	5680914	5680914	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	ctactgtgagacatcacaggTtgtcattgctagaggcaaga	11	8	2	3			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	10	5680914	5680914	T	A	SNP	ASB13	ENST00000479033	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB13	HGNC	ENSG00000196372	9	0	0	2	5	71.43	-	-	-	A	5680914	T	A	5680914	1	1	619	0	1	0	0	0	0	0	0	0	1021	1740	60	5		5	ASB13	10	5680914	RNA	SNP	T	TCGA-BH-A42U-01A-12D-A243-09	18	5680914	129853833	8	53908			1	94		2	2	19	N	T_A	5.23309e-06
PPA1	0	genome.wustl.edu	37	chr10	71978549	71978549	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.111111111111111	1	0.827962560261875	1.74509803921569	NA	1.74509803921569	1	1	0	tgcattagaccagcgtggtaCttcaactaccatgtgaaaca	8	10	1	2			TCGA-BH-A42U-01A-12D-A243-09	TCGA-BH-A42U-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6af9d417-48dc-412f-9d58-370d9f313cd6	89a8b467-4e8c-4ec4-b357-c90f425c712a	10	71978549	71978549	C	A	SNP	PPA1	ENST00000373232	human	ensembl	69_37n	-1	known	missense	c.148	p.V50L	1.000	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA1	HGNC	ENSG00000180817	25	0	0	16	3	15.79	-	-	-	A	71978549	C	A	71978549	3	1	619	1	0	0	0	0	1	0	0	0	12359	565	20	4	757	4	PPA1	10	71978549	Missense_Mutation	SNP	C	TCGA-BH-A42U-01A-12D-A243-09	66297635	71978549	63556198	9	53909										
HHLA3	0	genome.wustl.edu	37	chr1	70820695	70820695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gatctgagcctcccgcagagGaatgcagaatgacgccacgg	13	12	1	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	70820695	70820695	G	A	SNP	HHLA3	ENST00000432224	human	ensembl	69_37n	1	known	missense	c.61	p.E21K	0.000	NULL	NULL	-	no_errors	HHLA3	HGNC	ENSG00000197568	45	0	0	70	12	14.63	-	-	-	A	70820695	G	A	70820695	3	1	620	1	0	0	0	0	1	0	0	0	7147	1175	41	2	63	2	HHLA3	1	70820695	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		70820695	178429926	1	53910										
PALMD	0	genome.wustl.edu	37	chr1	100127929	100127929	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	agcgtctgaaaatagaggaaGacaaactaaagcaccagcat	9	8	1	3			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	100127929	100127929	G	A	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	1	known	missense	c.100	p.D34N	1.000	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	32	0	0	55	7	11.29	-	-	-	A	100127929	G	A	100127929	3	1	620	1	0	0	0	0	1	0	0	0	11484	942	33	2	106	2	PALMD	1	100127929	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	29307234	100127929	149122692	2	53911										
PCNXL2	0	genome.wustl.edu	37	chr1	233296053	233296053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cacttcccgttgatgatactCtttgtttttgagaatggggt	10	7	1	3			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	233296053	233296053	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.3493	p.E1165Q	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	15	0	0	25	6	18.75	-	-	-	G	233296053	C	G	233296053	3	3	620	1	0	0	0	0	1	0	0	0	11665	922	32	2	2984	2	PCNXL2	1	233296053	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	133168124	233296053	15954568	3	53912										
BAZ2B	0	genome.wustl.edu	37	chr2	160206348	160206348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gtcaccaaagaagcagttgaCatatcggcatgagtaagtga	11	7	1	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	160206348	160206348	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.4734	p.M1578I	0.004	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	29	0	0	32	5	13.51	-	-	-	T	160206348	C	T	160206348	3	4	620	1	0	0	0	0	1	0	0	0	1336	478	17	4	1812	4	BAZ2B	2	160206348	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		160206348	82993025	4	53913										
CIR1	0	genome.wustl.edu	37	chr2	175213341	175213341	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atttcttctgctttgctcttCaccaggatttcgctgtgccc	7	13	4	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	175213341	175213341	C	T	SNP	CIR1	ENST00000342016	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413K	0.899	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433	72	0	0	91	20	18.02	-	-	-	T	175213341	C	T	175213341	3	4	620	1	0	0	0	0	1	0	0	0	3461	835	29	2	119	2	CIR1	2	175213341	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	15006993	175213341	67986032	5	53914										
NBEAL1	0	genome.wustl.edu	37	chr2	203962315	203962315	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	tggcagacaagaacgagaaaGaccttgccaacaaattactg	9	9	0	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	203962315	203962315	G	C	SNP	NBEAL1	ENST00000483147	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	NBEAL1	HGNC	ENSG00000144426	39	0	0	34	7	16.67	-	-	-	C	203962315	G	C	203962315	1	2	620	0	1	0	0	0	0	0	0	0	10260	957	33	2		2	NBEAL1	2	203962315	RNA	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	28748974	203962315	39237058	6	53915										
SMARCC1	0	genome.wustl.edu	37	chr3	47629620	47629620	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	aaatcctgaaagaaacccaaGaaagttgaggaacacaagtc	8	8	0	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	47629620	47629620	G	T	SNP	SMARCC1	ENST00000425518	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	SMARCC1	HGNC	ENSG00000173473	22	0	0	29	5	14.71	-	-	-	T	47629620	G	T	47629620	1	4	620	0	1	0	0	0	0	0	0	0	14864	957	33	2		2	SMARCC1	3	47629620	RNA	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		47629620	150392810	7	53916										
KBTBD12	0	genome.wustl.edu	37	chr3	127642153	127642153	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atcacagcagaaagtgtgtcGgtgttattaaattacatgta	9	5	1	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	127642153	127642153	G	A	SNP	KBTBD12	ENST00000405109	human	ensembl	69_37n	1	known	silent	c.249	p.S83	0.011	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	20	0	0	34	7	17.07	-	-	-	A	127642153	G	A	127642153	2	1	620	1	0	0	0	0	0	0	0	1	8045	1103	39	1		1	KBTBD12	3	127642153	Silent	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	80012533	127642153	70380277	8	53917										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	52	11	17.46	-	-	-	A	178936091	G	A	178936091	3	1	620	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	51293938	178936091	19086339	9	53918										
ATP13A3	0	genome.wustl.edu	37	chr3	194147817	194147817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	aacttactctgattttggatGccacacttcataccaaggtt	6	10	2	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	194147817	194147817	G	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.3112	p.H1038N	0.984	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	36	0	0	35	4	10.26	-	-	-	T	194147817	G	T	194147817	3	4	620	1	0	0	0	0	1	0	0	0	1129	1319	46	4	588	4	ATP13A3	3	194147817	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	15211726	194147817	3874613	10	53919										
MAP3K1	0	genome.wustl.edu	37	chr5	56177011	56177014	+	Frame_Shift_Del	DEL	ATAG	ATAG	-													0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	ttcttggccgcctttgtcttAtagatagactgttgttggaa							TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	ATAG	ATAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	5	56177011	56177014	ATAG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2281_2284	p.R763fs	0.994:0.998:0.969:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	33	0	0	43	5	10.42	-	-	-	-	56177014	ATAG	-	56177011	7	5	620	1	0	1	0	1	0	0	0	0	9314	449	16	0	2331	0	MAP3K1	5	56177011	Frame_Shift_Del	DEL	ATAG	TCGA-BH-A42V-01A-11D-A243-09		56177011	124738249	11	53920										
PCDHAC1	0	genome.wustl.edu	37	chr5	140307594	140307594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atgaagacctcgattctaatGgtagggtcatttgtggcatg	12	6	2	2			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	5	140307594	140307594	G	T	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.1117	p.G373C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	28	0	0	31	4	11.43	-	-	-	T	140307594	G	T	140307594	3	4	620	1	0	0	0	0	1	0	0	0	11605	1348	47	4	1119	4	PCDHAC1	5	140307594	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	84130583	140307594	40607666	12	53921										
TUBB2B	0	genome.wustl.edu	37	chr6	3225580	3225580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	ccgccagcttgcgcaggtctGcgttcagctggcccgggaag	15	14	2	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	3225580	3225580	G	A	SNP	TUBB2B	ENST00000259818	human	ensembl	69_37n	-1	known	missense	c.743	p.A248V	1.000	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	15	0	0	28	7	20	-	-	-	A	3225580	G	A	3225580	3	1	620	1	0	0	0	0	1	0	0	0	16852	1319	46	4	598	4	TUBB2B	6	3225580	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		3225580	167889487	13	53922										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32629935	32629935	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	accaccggactttgatctggCctggatagaaatctgtcacc	9	12	3	2			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	32629935	32629935	C	G	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	missense	c.470	p.G157A	0.001	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	18	0	0	16	11	40.74	-	-	-	G	32629935	C	G	32629935	3	3	620	1	0	0	0	0	1	0	0	0	7257	739	26	4	327	4	HLA-DQB1	6	32629935	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	29404355	32629935	138485132	14	53923										
HLA-DPB1	0	genome.wustl.edu	37	chr6	33053652	33053652	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	agtgggcatcttcatgcacaGgaggagcaagaaaggtgaga	15	6	2	2			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	33053652	33053652	G	T	SNP	HLA-DPB1	ENST00000416804	human	ensembl	69_37n	1	known	nonsense	c.643	p.G215*	0.000	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-DPB1	HGNC	ENSG00000223865	36	0	0	35	4	10.26	-	-	-	T	33053652	G	T	33053652	4	4	620	1	0	0	0	0	0	1	0	0	7254	1000	35	4	757	4	HLA-DPB1	6	33053652	Nonsense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	423717	33053652	138061415	15	53924										
AKR1C2	0	genome.wustl.edu	37	chr10	5041580	5041580	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	ccatgaggtaggtgatgcagCgctccagagagtggtatgta	15	7	0	3			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	10	5041580	5041580	C	T	SNP	AKR1C2	ENST00000460124	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKR1C2	HGNC	ENSG00000151632	23	0	0	28	10	26.32	-	-	-	T	5041580	C	T	5041580	1	4	620	0	1	0	0	0	0	0	0	0	470	783	27	1		1	AKR1C2	10	5041580	RNA	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		5041580	130493167	16	53925										
MUC5B	0	genome.wustl.edu	37	chr11	1269731	1269731	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	taccacaaccacgggcttcaCagtcaccccctcctccagcc	5	21	2	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	1269731	1269731	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.11630	p.T3877K	0.010	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	75	0	0	90	23	20.35	-	-	-	A	1269731	C	A	1269731	3	1	620	1	0	0	0	0	1	0	0	0	10051	478	17	4	11752	4	MUC5B	11	1269731	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		1269731	133736785	17	53926										
PTPRJ	0	genome.wustl.edu	37	chr11	48146604	48146604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cgtgggacctgtggacccatCctccggccagcagtcccgag	13	16	0	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	48146604	48146604	C	T	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.959	p.S320F	0.000	smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	23	0	0	33	6	15.38	-	-	-	T	48146604	C	T	48146604	3	4	620	1	0	0	0	0	1	0	0	0	12887	855	30	2	981	2	PTPRJ	11	48146604	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	46876873	48146604	86859912	18	53927										
PCF11	0	genome.wustl.edu	37	chr11	82892090	82892090	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atcgactgtacactggtattCagtgttactcttgtggaatg	10	7	2	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	82892090	82892090	C	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	nonsense	c.4024	p.Q1342*	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	41	0	0	47	7	12.96	-	-	-	T	82892090	C	T	82892090	4	4	620	1	0	0	0	0	0	1	0	0	11646	827	29	2	4070	2	PCF11	11	82892090	Nonsense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	34745486	82892090	52114426	19	53928										
PARP4	0	genome.wustl.edu	37	chr13	25021263	25021263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gcacatctggattgagttgcTgccatttgacggagacagag	13	8	1	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	13	25021263	25021263	T	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3176	p.Q1059R	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	34	0	0	36	6	14.29	-	-	-	C	25021263	T	C	25021263	3	2	620	1	0	0	0	0	1	0	0	0	11536	1580	55	5	2034	5	PARP4	13	25021263	Missense_Mutation	SNP	T	TCGA-BH-A42V-01A-11D-A243-09		25021263	90148615	20	53929										
CDADC1	0	genome.wustl.edu	37	chr13	49841963	49841963	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atgcataagcaaatactgatGactataggtttggagaacct	9	6	0	3			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	13	49841963	49841963	G	A	SNP	CDADC1	ENST00000251108	human	ensembl	69_37n	1	known	missense	c.768	p.M256I	1.000	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543	28	0	0	44	9	16.98	-	-	-	A	49841963	G	A	49841963	3	1	620	1	0	0	0	0	1	0	0	0	3082	1290	45	2	786	2	CDADC1	13	49841963	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	24820700	49841963	65327915	21	53930										
SIX4	0	genome.wustl.edu	37	chr14	61180304	61180304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	agaatttgataagaaattctCtttcatgttagctaccgatt	6	6	2	3			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	14	61180304	61180304	C	G	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	missense	c.2167	p.E723Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	34	0	0	24	4	14.29	-	-	-	G	61180304	C	G	61180304	3	3	620	1	0	0	0	0	1	0	0	0	14438	922	32	2	182	2	SIX4	14	61180304	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		61180304	46169236	22	53931										
ADAMTS7	0	genome.wustl.edu	37	chr15	79056047	79056047	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gcagcccggctcacctggccCcagggccccaccacccactg	10	22	1	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	15	79056047	79056047	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	nonsense	c.4734	p.W1578*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	101	0	0	73	10	12.05	-	-	-	T	79056047	C	T	79056047	4	4	620	1	0	0	0	0	0	1	0	0	271	624	22	4	338	4	ADAMTS7	15	79056047	Nonsense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		79056047	23475345	23	53932										
OR4F15	0	genome.wustl.edu	37	chr15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gagcccaagaatgtgtctatActttttagccacttcctcta	6	11	2	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	15	102358817	102358817	A	G	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	1	known	missense	c.428	p.Y143C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	65	0	0	65	11	14.29	-	-	-	G	102358817	A	G	102358817	3	3	620	1	0	0	0	0	1	0	0	0	11134	391	14	5	430	5	OR4F15	15	102358817	Missense_Mutation	SNP	A	TCGA-BH-A42V-01A-11D-A243-09	23302770	102358817	172575	24	53933										
SCPEP1	0	genome.wustl.edu	37	chr17	55055526	55055526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cgtgcggtacttgtcatggaGctggcactgcggcgctctcc	14	13	2	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	17	55055526	55055526	G	T	SNP	SCPEP1	ENST00000262288	human	ensembl	69_37n	1	known	missense	c.6	p.E2D	1.000	NULL	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064	25	0	0	26	4	13.33	-	-	-	T	55055526	G	T	55055526	3	4	620	1	0	0	0	0	1	0	0	0	14023	962	34	4	8	4	SCPEP1	17	55055526	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		55055526	26139684	25	53934										
ZNF407	0	genome.wustl.edu	37	chr18	72347245	72347245	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atgattgtggcttcttagcaGatggactgagtggactgaat	13	5	1	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	18	72347245	72347245	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.4270	p.D1424N	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	36	0	0	40	11	21.57	-	-	-	A	72347245	G	A	72347245	3	1	620	1	0	0	0	0	1	0	0	0	17983	942	33	2	4272	2	ZNF407	18	72347245	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		72347245	5730003	26	53935										
SIRT6	0	genome.wustl.edu	37	chr19	4174718	4174718	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gggctctgagccgttgtgctGggcgcagggctcctgcttgg	18	11	1	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	19	4174718	4174718	G	A	SNP	SIRT6	ENST00000337491	human	ensembl	69_37n	-1	known	nonsense	c.964	p.Q322*	0.024	NULL	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT6	HGNC	ENSG00000077463	41	0	0	29	5	14.71	-	-	-	A	4174718	G	A	4174718	4	1	620	1	0	0	0	0	0	1	0	0	14431	1357	47	4	107	4	SIRT6	19	4174718	Nonsense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		4174718	54954265	27	53936										
ZNF585B	0	genome.wustl.edu	37	chr19	37677381	37677381	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cacactcagtacatatggaaGatttctctctactttgaatc	5	10	3	2			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	19	37677381	37677381	G	C	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.1058	p.S353C	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	41	0	0	56	7	11.11	-	-	-	C	37677381	G	C	37677381	3	2	620	1	0	0	0	0	1	0	0	0	18114	942	33	2	1255	2	ZNF585B	19	37677381	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	33502663	37677381	21451602	28	53937										
LAMA5	0	genome.wustl.edu	37	chr20	60889469	60889469	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	gtgcaccttcttgtcacgcaGagacacacccatgtagtccc	8	15	2	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	20	60889469	60889469	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	silent	c.8395	p.L2799	0.991	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	50	0	0	43	6	12.24	-	-	-	A	60889469	G	A	60889469	2	1	620	1	0	0	0	0	0	0	0	1	8663	933	33	2		2	LAMA5	20	60889469	Silent	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		60889469	2136051	29	53938										
ASPHD2	0	genome.wustl.edu	37	chr22	26839131	26839131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	atccaaacgtcgcagcggccGaacggcaggctcttgatttc	11	13	1	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	26839131	26839131	G	A	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	missense	c.1069	p.E357K	1.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	36	0	0	52	6	10.34	-	-	-	A	26839131	G	A	26839131	3	1	620	1	0	0	0	0	1	0	0	0	1059	1059	37	1	1079	1	ASPHD2	22	26839131	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09		26839131	24465435	30	53939										
DEPDC5	0	genome.wustl.edu	37	chr22	32297755	32297755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	acccgaaacgtactgggatcGaatgcacctcttccaggaag	10	12	1	0			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	32297755	32297755	G	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.4337	p.R1446Q	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	44	0	0	43	16	27.12	-	-	-	A	32297755	G	A	32297755	3	1	620	1	0	0	0	0	1	0	0	0	4478	1058	37	1	4552	1	DEPDC5	22	32297755	Missense_Mutation	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	5458624	32297755	19006811	31	53940										
RAC2	0	genome.wustl.edu	37	chr22	37627984	37627984	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cagctcaccttggcgcggacGttctcataagaggctgggct	13	12	2	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	37627984	37627984	G	A	SNP	RAC2	ENST00000249071	human	ensembl	69_37n	-1	known	silent	c.276	p.N92	0.996	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC2	HGNC	ENSG00000128340	44	0	0	42	8	16	-	-	-	A	37627984	G	A	37627984	2	1	620	1	0	0	0	0	0	0	0	1	13058	1136	40	1		1	RAC2	22	37627984	Silent	SNP	G	TCGA-BH-A42V-01A-11D-A243-09	5330229	37627984	13676582	32	53941										
NLGN4X	0	genome.wustl.edu	37	chrX	5947366	5947366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	ggtgatcacgatgacgtttcCgtagcttgccaaaatgctgc	11	10	1	2			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	5947366	5947366	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.640	p.G214R	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	61	0	0	91	18	16.51	-	-	-	T	5947366	C	T	5947366	3	4	620	1	0	0	0	0	1	0	0	0	10536	661	23	1	1886	1	NLGN4X	23	5947366	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09		5947366	149323194	33	53942										
VCX	0	genome.wustl.edu	37	chrX	7811962	7811962	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	aggtggaggaaccactgagtCaggagagcgagatggaagaa	17	5	1	4			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	7811962	7811962	C	T	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	nonsense	c.526	p.Q176*	0.083	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	68	0	0	140	22	13.58	-	-	-	T	7811962	C	T	7811962	4	4	620	1	0	0	0	0	0	1	0	0	17239	827	29	2	532	2	VCX	23	7811962	Nonsense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	1864596	7811962	147458598	34	53943										
BTK	0	genome.wustl.edu	37	chrX	100617172	100617172	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371428571428571	13	0.000768965494013078	3.07826086956522	4.92521739130435	2.63850931677019	0.128346121057119	0.62934362934363	9	cctgtatacctggtcctcctCaggcgttgggggaagaggct	14	11	1	1			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	100617172	100617172	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.577	p.E193K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	48	0	0	39	15	27.78	-	-	-	T	100617172	C	T	100617172	3	4	620	1	0	0	0	0	1	0	0	0	1566	835	29	2	1454	2	BTK	23	100617172	Missense_Mutation	SNP	C	TCGA-BH-A42V-01A-11D-A243-09	92805210	100617172	54653388	35	53944										
UBR4	0	genome.wustl.edu	37	chr1	19442032	19442032	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tagaagtctgcaaactcaatCatcagattggaggccacaat	8	9	4	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	19442032	19442032	C	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.10923	p.M3641I	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	39	0	0	42	15	26.32	-	-	-	A	19442032	C	A	19442032	3	1	621	1	0	0	0	0	1	0	0	0	17001	826	29	2	4760	2	UBR4	1	19442032	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		19442032	229808589	1	53945										
ZMYM4	0	genome.wustl.edu	37	chr1	35870629	35870629	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttggaattcttacagggacgGaagaagtctatagtggctgt	13	5	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	35870629	35870629	G	C	SNP	ZMYM4	ENST00000457946	human	ensembl	69_37n	1	known	missense	c.2509	p.E837Q	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZMYM4	HGNC	ENSG00000146463	28	0	0	34	13	27.66	-	-	-	C	35870629	G	C	35870629	3	2	621	1	0	0	0	0	1	0	0	0	17798	1161	41	2	3628	2	ZMYM4	1	35870629	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	16428597	35870629	213379992	2	53946										
PTPRF	0	genome.wustl.edu	37	chr1	44010810	44010810	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgcctgcactggtgatgcttGgtttggtggcaggcgcccat	15	10	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	44010810	44010810	G	C	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.64	p.G22R	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	40	0	0	49	25	33.78	-	-	-	C	44010810	G	C	44010810	3	2	621	1	0	0	0	0	1	0	0	0	12884	1348	47	4	66	4	PTPRF	1	44010810	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	8140181	44010810	205239811	3	53947										
SLC5A9	0	genome.wustl.edu	37	chr1	48713394	48713394	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	acaagtggagaaacagaagcCcagagagagcactgggtttg	14	7	0	4			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	48713394	48713394	C	T	SNP	SLC5A9	ENST00000471020	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SLC5A9	HGNC	ENSG00000117834	9	0	0	13	94	87.85	-	-	-	T	48713394	C	T	48713394	1	4	621	0	1	0	0	0	0	0	0	0	14761	638	22	4		4	SLC5A9	1	48713394	RNA	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	4702584	48713394	200537227	4	53948										
SASS6	0	genome.wustl.edu	37	chr1	100550803	100550803	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aaatttgaaacttgctatttGaggatctggtttgtgttgac	10	4	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	100550803	100550803	G	A	SNP	SASS6	ENST00000462159	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SASS6	HGNC	ENSG00000156876	14	0	0	5	4	44.44	-	-	-	A	100550803	G	A	100550803	1	1	621	0	1	0	0	0	0	0	0	0	13937	1305	45	2		2	SASS6	1	100550803	RNA	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	51837409	100550803	148699818	5	53949										
MAGI3	0	genome.wustl.edu	37	chr1	114092195	114092195	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cttcagtttcaaaaaggatcAattgaccacaaactgcagca	6	10	3	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	114092195	114092195	A	T	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	silent	c.375	p.S125	0.881	smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	31	0	0	19	22	53.66	-	-	-	T	114092195	A	T	114092195	2	4	621	1	0	0	0	0	0	0	0	1	9263	117	5	5		5	MAGI3	1	114092195	Silent	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	13541392	114092195	135158426	6	53950										
ADAM15	0	genome.wustl.edu	37	chr1	155025919	155025919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ctgcctgagcccctgaggatCaagttggagctggacggtga	15	10	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	155025919	155025919	C	G	SNP	ADAM15	ENST00000356955	human	ensembl	69_37n	1	known	missense	c.213	p.I71M	0.096	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	50	0	0	91	25	21.55	-	-	-	G	155025919	C	G	155025919	3	3	621	1	0	0	0	0	1	0	0	0	237	816	29	2	223	2	ADAM15	1	155025919	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	40933724	155025919	94224702	7	53951										
ASTN1	0	genome.wustl.edu	37	chr1	176903419	176903419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgccgaactggtccaacagcGccacaaaatctgcacgagat	9	13	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	176903419	176903419	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2564	p.A855V	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	24	0	0	29	38	56.72	-	-	-	A	176903419	G	A	176903419	3	1	621	1	0	0	0	0	1	0	0	0	1068	1087	38	1	1380	1	ASTN1	1	176903419	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	21877500	176903419	72347202	8	53952										
CACNA1E	0	genome.wustl.edu	37	chr1	181726134	181726134	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcaaccgcatggagatgtctAtcttttatgtagtctacttt	8	8	3	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	181726134	181726134	A	G	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.4201	p.I1401V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	58	0	0	61	72	54.14	-	-	-	G	181726134	A	G	181726134	3	3	621	1	0	0	0	0	1	0	0	0	2567	449	16	5	4319	5	CACNA1E	1	181726134	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	4822715	181726134	67524487	9	53953										
CDC73	0	genome.wustl.edu	37	chr1	193218979	193218979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tggatagaccagtgttcttaCggttttgggaaacattggac	12	6	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	193218979	193218979	C	T	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	1	known	missense	c.1537	p.R513W	0.999	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	44	0	0	44	35	44.3	-	-	-	T	193218979	C	T	193218979	3	4	621	1	0	0	0	0	1	0	0	0	3114	527	19	1	1599	1	CDC73	1	193218979	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	11492845	193218979	56031642	10	53954										
PTPRC	0	genome.wustl.edu	37	chr1	198704339	198704339	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gtaaagatcaaccagcacaaAagatgtccagattacatcat	6	9	2	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	198704339	198704339	A	G	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	silent	c.2361	p.K787	0.117	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	27	0	0	38	16	29.63	-	-	-	G	198704339	A	G	198704339	2	3	621	1	0	0	0	0	0	0	0	1	12880	11	1	5		5	PTPRC	1	198704339	Silent	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	5485360	198704339	50546282	11	53955										
CACNA1S	0	genome.wustl.edu	37	chr1	201046073	201046073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	agacgctgatgagggcttggGgaaagttgtcaaagttgctg	16	5	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	201046073	201046073	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.1802	p.P601L	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	56	0	0	77	36	31.86	-	-	-	A	201046073	G	A	201046073	3	1	621	1	0	0	0	0	1	0	0	0	2572	1232	43	4	3951	4	CACNA1S	1	201046073	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	2341734	201046073	48204548	12	53956										
HSD11B1	0	genome.wustl.edu	37	chr1	209879174	209879174	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	agagatgctccaaggaaagaAagtgattgtcacaggggcca	13	7	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	209879174	209879174	A	G	SNP	HSD11B1	ENST00000261465	human	ensembl	69_37n	1	known	missense	c.107	p.K36R	0.975	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD11B1	HGNC	ENSG00000117594	36	0	0	49	7	12.5	-	-	-	G	209879174	A	G	209879174	3	3	621	1	0	0	0	0	1	0	0	0	7426	14	1	5	113	5	HSD11B1	1	209879174	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	8833101	209879174	39371447	13	53957										
LYST	0	genome.wustl.edu	37	chr1	235929455	235929455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggagggtgaactgctaaaagGaaattgaagataattgtcaa	12	3	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	1	235929455	235929455	G	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.6045	p.F2015L	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	10	0	0	22	6	21.43	-	-	-	T	235929455	G	T	235929455	3	4	621	1	0	0	0	0	1	0	0	0	9195	1165	41	2	5492	2	LYST	1	235929455	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	26050281	235929455	13321166	14	53958										
LRPPRC	0	genome.wustl.edu	37	chr2	44173272	44173272	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aattcttctttcaagttcaaGgcatcttctactttatcatg	4	9	7	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	2	44173272	44173272	G	C	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	silent	c.2190	p.A730	0.013	pfam_Pentatricopeptide_repeat	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	43	0	0	50	28	35.9	-	-	-	C	44173272	G	C	44173272	2	2	621	1	0	0	0	0	0	0	0	1	9031	987	35	4		4	LRPPRC	2	44173272	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		44173272	199026101	15	53959										
LIMS1	0	genome.wustl.edu	37	chr2	109278695	109278695	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgtgacttaggaacgaacatGatggttaagctaccttcatt	9	7	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	2	109278695	109278695	G	A	SNP	LIMS1	ENST00000393314	human	ensembl	69_37n	1	known	silent	c.353	p.*118	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756	215	0	0	204	44	17.74	-	-	-	A	109278695	G	A	109278695	2	1	621	1	0	0	0	0	0	0	0	1	8858	1305	45	2		2	LIMS1	2	109278695	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	65105423	109278695	133920678	16	53960										
POTEF	0	genome.wustl.edu	37	chr2	130832170	130832170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcaaggctggaagagcgcctCggggcagcggaaccgctcgt	17	12	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	2	130832170	130832170	C	T	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	missense	c.2875	p.E959K	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	33	0	0	32	5	13.51	-	-	-	T	130832170	C	T	130832170	3	4	621	1	0	0	0	0	1	0	0	0	12339	893	31	1	356	1	POTEF	2	130832170	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	21553475	130832170	112367203	17	53961										
GAP43	0	genome.wustl.edu	37	chr3	115395122	115395122	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cccagccactggctccaagcCtgatgagcccggcaaagcag	11	16	0	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	3	115395122	115395122	C	A	SNP	GAP43	ENST00000305124	human	ensembl	69_37n	1	known	missense	c.293	p.P98H	0.003	pfam_Neuromodulin_C	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	39	0	0	56	25	30.86	-	-	-	A	115395122	C	A	115395122	3	1	621	1	0	0	0	0	1	0	0	0	6285	681	24	4	441	4	GAP43	3	115395122	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		115395122	82627308	18	53962										
TOPBP1	0	genome.wustl.edu	37	chr3	133358853	133358853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggctttcgtctgctctctttCccgttctagcagtctccaac	7	15	4	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	3	133358853	133358853	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.2183	p.G728E	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	30	0	0	31	19	38	-	-	-	T	133358853	C	T	133358853	3	4	621	1	0	0	0	0	1	0	0	0	16465	855	30	2	2449	2	TOPBP1	3	133358853	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	17963731	133358853	64663577	19	53963										
PLCH1	0	genome.wustl.edu	37	chr3	155282748	155282748	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcagcacccgtgcatacataTccactttggactgagaaagg	10	11	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	3	155282748	155282748	T	C	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.989	p.D330G	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	62	0	0	71	31	30.39	-	-	-	C	155282748	T	C	155282748	3	2	621	1	0	0	0	0	1	0	0	0	12111	1435	50	5	4175	5	PLCH1	3	155282748	Missense_Mutation	SNP	T	TCGA-BH-A5IZ-01A-11D-A27P-09	21923895	155282748	42739682	20	53964										
TNIK	0	genome.wustl.edu	37	chr3	170857303	170857306	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tagctgctgctgcaagatctCtaactgtctctgctcctcct							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	CTAA	CTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	3	170857303	170857306	CTAA	-	DEL	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	frame_shift_del	c.1375_1372	p.L458fs	1.000:1.000:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	22	0	0	24	12	33.33	-	-	-	-	170857306	CTAA	-	170857303	7	5	621	1	0	1	0	1	0	0	0	0	16408	922	32	0	2787	0	TNIK	3	170857303	Frame_Shift_Del	DEL	CTAA	TCGA-BH-A5IZ-01A-11D-A27P-09	15574555	170857303	27165127	21	53965										
MAN2B2	0	genome.wustl.edu	37	chr4	6606892	6606892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cccactgcaggggcccaagaGggcacccaggagccggctgc	15	16	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	4	6606892	6606892	G	T	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	missense	c.1650	p.E550D	0.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	22	0	0	13	15	53.57	-	-	-	T	6606892	G	T	6606892	3	4	621	1	0	0	0	0	1	0	0	0	9288	991	35	4	1692	4	MAN2B2	4	6606892	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		6606892	184547384	22	53966										
ARAP2	0	genome.wustl.edu	37	chr4	36148931	36148931	+	Frame_Shift_Del	DEL	C	C	-													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cacttacctccctttttctaCcaagagtaaaacatccagtt							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-11A-13D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	1f266cd4-ef7c-434b-902b-13842442e290	4	36148931	36148931	C	-	DEL	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	frame_shift_del	c.3250	p.V1084fs	1.000	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	46	0	0	15	2	11.76	-	-	-	-	36148931	C	-	36148931	7	5	621	1	0	1	0	1	0	0	0	0	841	507	18	0	1924	0	ARAP2	4	36148931	Frame_Shift_Del	DEL	C	TCGA-BH-A5IZ-01A-11D-A27P-09	29542039	36148931	155005345	23	53967										
SPOCK3	0	genome.wustl.edu	37	chr4	167675842	167675842	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tctgttaaacatccagccaaGtgagtccttgcaaattggca	8	10	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	4	167675842	167675842	G	C	SNP	SPOCK3	ENST00000357154	human	ensembl	69_37n	-1	known	missense	c.757	p.L253V	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104	39	0	0	21	20	48.78	-	-	-	C	167675842	G	C	167675842	3	2	621	1	0	0	0	0	1	0	0	0	15172	1029	36	4	569	4	SPOCK3	4	167675842	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	131526911	167675842	23478434	24	53968										
UFSP2	0	genome.wustl.edu	37	chr4	186343669	186343669	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	agctagctgaaaagccaaatCaaggcctcctcttattctga	7	11	3	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	4	186343669	186343669	C	G	SNP	UFSP2	ENST00000264689	human	ensembl	69_37n	-1	known	missense	c.52	p.D18H	1.000	NULL	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775	33	0	0	24	17	41.46	-	-	-	G	186343669	C	G	186343669	3	3	621	1	0	0	0	0	1	0	0	0	17035	826	29	2	1401	2	UFSP2	4	186343669	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	18667827	186343669	4810607	25	53969										
GRAMD3	0	genome.wustl.edu	37	chr5	125821464	125821464	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttcttatattctatgcaattGtgtaagtacatgaatttact	5	5	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	5	125821464	125821464	G	C	SNP	GRAMD3	ENST00000542322	human	ensembl	69_37n	1	known	missense	c.1081	p.V361L	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324	22	0	0	6	10	62.5	-	-	-	C	125821464	G	C	125821464	3	2	621	1	0	0	0	0	1	0	0	0	6802	1391	48	4	1313	4	GRAMD3	5	125821464	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		125821464	55093796	26	53970										
PCDHA1	0	genome.wustl.edu	37	chr5	140167621	140167621	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcagtcagtgagctggtgccGcgattggtgggtgcgggtca	19	8	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	5	140167621	140167621	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.1746	p.P582	0.004	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	177	0	0	110	96	46.6	-	-	-	A	140167621	G	A	140167621	2	1	621	1	0	0	0	0	0	0	0	1	11592	1074	38	1		1	PCDHA1	5	140167621	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	14346157	140167621	40747639	27	53971										
KIAA1586	0	genome.wustl.edu	37	chr6	56918699	56918699	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttctaggaactgtagctaaaGaacttgaaactgaaattatt	7	5	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	6	56918699	56918699	G	T	SNP	KIAA1586	ENST00000370733	human	ensembl	69_37n	1	known	nonsense	c.1402	p.E468*	0.998	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116	18	0	0	14	6	30	-	-	-	T	56918699	G	T	56918699	4	4	621	1	0	0	0	0	0	1	0	0	8297	943	33	2	1416	2	KIAA1586	6	56918699	Nonsense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		56918699	114196368	28	53972										
BAI3	0	genome.wustl.edu	37	chr6	70092792	70092792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	atcagaaatttcaaactttgGacagatttcgggatatacca	7	7	2	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	6	70092792	70092792	G	A	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.4345	p.D1449N	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	28	0	0	45	16	26.23	-	-	-	A	70092792	G	A	70092792	3	1	621	1	0	0	0	0	1	0	0	0	1304	1174	41	2	4459	2	BAI3	6	70092792	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	13174093	70092792	101022275	29	53973										
PHIP	0	genome.wustl.edu	37	chr6	79664655	79664655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cgtaagactgggctctattaCgtaatcttcttctaggctga	9	9	4	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	6	79664655	79664655	C	T	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.3929	p.R1310H	1.000	superfamily_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	17	0	0	32	10	23.81	-	-	-	T	79664655	C	T	79664655	3	4	621	1	0	0	0	0	1	0	0	0	11916	536	19	1	1560	1	PHIP	6	79664655	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	9571863	79664655	91450412	30	53974										
PRSS35	0	genome.wustl.edu	37	chr6	84234120	84234120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aacgatagggctgatcagttGgtctatcggttttgcagtgt	13	6	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	6	84234120	84234120	G	T	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	missense	c.960	p.L320F	1.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	8	0	0	14	7	33.33	-	-	-	T	84234120	G	T	84234120	3	4	621	1	0	0	0	0	1	0	0	0	12704	1339	47	4	962	4	PRSS35	6	84234120	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	4569465	84234120	86880947	31	53975										
ACTB	0	genome.wustl.edu	37	chr7	5567201	5567201	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aactttgggggatgctcgctCcaaccgactgctgtcacctt	10	13	1	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	7	5567201	5567201	C	T	SNP	ACTB	ENST00000464611	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	ACTB	HGNC	ENSG00000075624	16	0	0	49	12	19.67	-	-	-	T	5567201	C	T	5567201	1	4	621	0	1	0	0	0	0	0	0	0	193	870	30	2		2	ACTB	7	5567201	RNA	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		5567201	153571462	32	53976										
GPR141	0	genome.wustl.edu	37	chr7	37780220	37780220	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gtgccatttcgcttgacctaCctcatcaagaagacttggat	8	11	2	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	7	37780220	37780220	C	A	SNP	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	nonsense	c.225	p.Y75*	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	31	0	0	40	19	32.2	-	-	-	A	37780220	C	A	37780220	4	1	621	1	0	0	0	0	0	1	0	0	6699	518	18	4	227	4	GPR141	7	37780220	Nonsense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	32213019	37780220	121358443	33	53977										
PCLO	0	genome.wustl.edu	37	chr7	82584707	82584707	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggtgaatattcagaacaagaAgatctatggagctcctccat	9	8	2	4			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	7	82584707	82584707	A	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.5562	p.S1854	0.474	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	51	0	0	40	27	40.3	-	-	-	G	82584707	A	G	82584707	2	3	621	1	0	0	0	0	0	0	0	1	11656	59	3	5		5	PCLO	7	82584707	Silent	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	44804487	82584707	76553956	34	53978										
SPAM1	0	genome.wustl.edu	37	chr7	123594492	123594492	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gggaagccatcagagtttccAaaatacctgatgcaaaaagt	9	8	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	7	123594492	123594492	A	T	SNP	SPAM1	ENST00000340011	human	ensembl	69_37n	1	known	nonsense	c.868	p.K290*	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Glyco_hydro_56_PH20,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	24	0	0	27	6	18.18	-	-	-	T	123594492	A	T	123594492	4	4	621	1	0	0	0	0	0	1	0	0	15077	131	5	5	870	5	SPAM1	7	123594492	Nonsense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	41009785	123594492	35544171	35	53979										
DLGAP2	0	genome.wustl.edu	37	chr8	1497331	1497331	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	acctggtacactccgtgcagAagctcttcaccaagtcgcac	8	15	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	8	1497331	1497331	A	T	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	1	known	nonsense	c.472	p.K158*	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	25	0	0	44	21	32.31	-	-	-	T	1497331	A	T	1497331	4	4	621	1	0	0	0	0	0	1	0	0	4596	247	9	5	474	5	DLGAP2	8	1497331	Nonsense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09		1497331	144866691	36	53980										
FOXD4L3	0	genome.wustl.edu	37	chr9	70918118	70918118	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cggcggcccgagcgacccctCagagtttggcaccaagttca	12	15	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-11A-13D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	1f266cd4-ef7c-434b-902b-13842442e290	9	70918118	70918118	C	T	SNP	FOXD4L3	ENST00000342833	human	ensembl	69_37n	1	known	missense	c.251	p.S84L	0.021	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559	12	0	0	7	5	41.67	-	-	-	T	70918118	C	T	70918118	3	4	621	1	0	0	0	0	1	0	0	0	6048	838	29	2	253	2	FOXD4L3	9	70918118	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		70918118	70295313	37	53981										
ZBTB43	0	genome.wustl.edu	37	chr9	129594905	129594905	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgtgacgtctccattgttgtCcaaggccacattttccgggc	10	12	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	9	129594905	129594905	C	G	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	1	known	silent	c.117	p.V39	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	33	0	0	12	9	42.86	-	-	-	G	129594905	C	G	129594905	2	3	621	1	0	0	0	0	0	0	0	1	17640	842	30	2		2	ZBTB43	9	129594905	Silent	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	58676787	129594905	11618526	38	53982										
CACNA1B	0	genome.wustl.edu	37	chr9	140777194	140777194	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cactgttctgcgcttctcctAggacgacacggagccctatt	9	14	2	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-11A-13D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	1f266cd4-ef7c-434b-902b-13842442e290	9	140777194	140777194	A	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	splice_site	c.391-2	e3-2	1.000	-	-	-	no_errors	CACNA1B	HGNC	ENSG00000148408	83	0	0	86	12	12.24	-	-	-	T	140777194	A	T	140777194	5	4	621	1	0	0	0	0	0	0	1	0	2564	434	15	5	399	5	CACNA1B	9	140777194	Splice_Site	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	11182289	140777194	436237	39	53983										
GPR158	0	genome.wustl.edu	37	chr10	25883312	25883312	+	Frame_Shift_Del	DEL	C	C	-													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgacagtcaccattgggttgCttttgattccaaaggtattc							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	10	25883312	25883312	C	-	DEL	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	frame_shift_del	c.1984	p.L662fs	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	20	0	0	17	12	37.5	-	-	-	-	25883312	C	-	25883312	7	5	621	1	0	1	0	1	0	0	0	0	6713	797	28	0	2018	0	GPR158	10	25883312	Frame_Shift_Del	DEL	C	TCGA-BH-A5IZ-01A-11D-A27P-09		25883312	109651435	40	53984	428	2								
GPR158	0	genome.wustl.edu	37	chr10	25883313	25883313	+	Missense_Mutation	SNP	T	T	A													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gacagtcaccattgggttgcTtttgattccaaaggtattct							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	10	25883313	25883313	T	A	SNP	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	missense	c.1985	p.L662H	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	20	0	0	20	13	39.39	-	-	-	A	25883313	T	A	25883313	3	1	621	1	0	0	0	0	1	0	0	0	6713	1609	56	5	2019	5	GPR158	10	25883313	Missense_Mutation	SNP	T	TCGA-BH-A5IZ-01A-11D-A27P-09	1	25883313	109651434	41	53985	428	2								
ZNF25	0	genome.wustl.edu	37	chr10	38241446	38241446	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gctgatgtactgtgagggctGacttctggtagaagcatttc	13	7	1	4			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	10	38241446	38241446	G	A	SNP	ZNF25	ENST00000302609	human	ensembl	69_37n	-1	known	missense	c.980	p.S327L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395	42	0	0	46	18	28.12	-	-	-	A	38241446	G	A	38241446	3	1	621	1	0	0	0	0	1	0	0	0	17890	1294	45	2	394	2	ZNF25	10	38241446	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	12358133	38241446	97293301	42	53986										
ZMIZ1	0	genome.wustl.edu	37	chr10	81050733	81050733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	caggtccttgggaaccctatGgccaatgccaacaaccccat	8	15	0	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	10	81050733	81050733	G	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.558	p.M186I	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	43	0	0	47	26	35.62	-	-	-	T	81050733	G	T	81050733	3	4	621	1	0	0	0	0	1	0	0	0	17792	1348	47	4	580	4	ZMIZ1	10	81050733	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	42809287	81050733	54484014	43	53987										
PLCE1	0	genome.wustl.edu	37	chr10	95892012	95892012	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tcaccaagctcccagcctccGagacagcccatggaaggata	9	15	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	10	95892012	95892012	G	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.1288	p.E430Q	0.025	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	38	0	0	39	31	44.29	-	-	-	C	95892012	G	C	95892012	3	2	621	1	0	0	0	0	1	0	0	0	12108	1059	37	3	1580	3	PLCE1	10	95892012	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	14841279	95892012	39642735	44	53988										
CHRNA10	0	genome.wustl.edu	37	chr11	3687705	3687705	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ccaggctggcactgggcggaCactgggaccacagtaatgca	14	12	0	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	11	3687705	3687705	C	A	SNP	CHRNA10	ENST00000250699	human	ensembl	69_37n	-1	known	missense	c.985	p.V329F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749	47	0	0	87	10	10.31	-	-	-	A	3687705	C	A	3687705	3	1	621	1	0	0	0	0	1	0	0	0	3411	478	17	4	371	4	CHRNA10	11	3687705	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		3687705	131318811	45	53989										
OR52E2	0	genome.wustl.edu	37	chr11	5080547	5080547	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gtgtgaagttgtggataaaaAacatctgggtgaggcaggct	15	4	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	11	5080547	5080547	A	T	SNP	OR52E2	ENST00000321522	human	ensembl	69_37n	-1	known	missense	c.311	p.F104Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52E2	HGNC	ENSG00000176787	29	0	0	30	15	33.33	-	-	-	T	5080547	A	T	5080547	3	4	621	1	0	0	0	0	1	0	0	0	11188	14	1	5	669	5	OR52E2	11	5080547	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	1392842	5080547	129925969	46	53990										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57069368	57069368	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cgtgtccggcggctctgaggTtcctccactacctcttcatc	9	16	3	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	11	57069368	57069368	T	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.4884	p.E1628	1.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	16	0	0	22	9	29.03	-	-	-	C	57069368	T	C	57069368	2	2	621	1	0	0	0	0	0	0	0	1	16415	1722	60	5		5	TNKS1BP1	11	57069368	Silent	SNP	T	TCGA-BH-A5IZ-01A-11D-A27P-09	51988821	57069368	77937148	47	53991										
KIAA1467	0	genome.wustl.edu	37	chr12	13211404	13211404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggtggggacctgtctccattGgaattggctgatgtgaatgg	16	6	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	12	13211404	13211404	G	T	SNP	KIAA1467	ENST00000197268	human	ensembl	69_37n	1	known	missense	c.453	p.L151F	0.999	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	KIAA1467	HGNC	ENSG00000084444	100	1	0.97	205	65	24.07	-	-	-	T	13211404	G	T	13211404	3	4	621	1	0	0	0	0	1	0	0	0	8287	1339	47	4	463	4	KIAA1467	12	13211404	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		13211404	120640491	48	53992										
KCNH3	0	genome.wustl.edu	37	chr12	49949668	49949668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggctggcccctctgctccccCacgggccctagaggggctac	13	18	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	12	49949668	49949668	C	A	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	missense	c.2402	p.P801Q	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	55	0	0	38	36	48.65	-	-	-	A	49949668	C	A	49949668	3	1	621	1	0	0	0	0	1	0	0	0	8087	594	21	4	2448	4	KCNH3	12	49949668	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	36738264	49949668	83902227	49	53993										
CAMKK2	0	genome.wustl.edu	37	chr12	121678327	121678328	+	In_Frame_Ins	INS	-	-	TTT													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gacgtcatggagtcaagtccINStttttttttttttgtcccct							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	12	121678327	121678328	-	TTT	INS	CAMKK2	ENST00000392474	human	ensembl	69_37n	-1	known	in_frame_ins	c.1615_1614	p.538in_frame_insK	0.005:0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	26	0	0	29	6	17.14	-	-	-	TTT	121678328	-	TTT	121678327	7	5	621	1	0	1	1	0	0	0	0	0	2632	696	24	0		0	CAMKK2	12	121678327	In_Frame_Ins	INS	-	TCGA-BH-A5IZ-01A-11D-A27P-09	71728659	121678327	12173568	50	53994										
DNAJA4	0	genome.wustl.edu	37	chr15	78565507	78565507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggagtcacgaagaaattggcCctccagaaaaatgtaatttg	10	7	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	15	78565507	78565507	C	T	SNP	DNAJA4	ENST00000394855	human	ensembl	69_37n	1	known	silent	c.471	p.A157	0.176	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA4	HGNC	ENSG00000140403	16	0	0	18	14	43.75	-	-	-	T	78565507	C	T	78565507	2	4	621	1	0	0	0	0	0	0	0	1	4649	610	22	4		4	DNAJA4	15	78565507	Silent	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		78565507	23965885	51	53995										
AXIN1	0	genome.wustl.edu	37	chr16	396809	396809	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggtgggggaggcactgccctCaggctcataccccaggtcca	14	14	2	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	16	396809	396809	C	G	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	missense	c.217	p.E73Q	1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	21	0	0	11	9	45	-	-	-	G	396809	C	G	396809	3	3	621	1	0	0	0	0	1	0	0	0	1240	835	29	2	2411	2	AXIN1	16	396809	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		396809	89957944	52	53996										
ZNF629	0	genome.wustl.edu	37	chr16	30794371	30794371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcgcagatgtagggccgctcGccgcggtggatgcgctggtg	19	11	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	16	30794371	30794371	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	silent	c.1278	p.G426	0.951	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	59	0	0	62	52	45.22	-	-	-	A	30794371	G	A	30794371	2	1	621	1	0	0	0	0	0	0	0	1	18149	1074	38	1		1	ZNF629	16	30794371	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	30397562	30794371	59560382	53	53997										
WWP2	0	genome.wustl.edu	37	chr16	69965781	69965781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cgaggagggcctggactatgGgggcatcgccaggtgagctt	18	9	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	16	69965781	69965781	G	C	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.1670	p.G557A	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	45	0	0	27	34	55.74	-	-	-	C	69965781	G	C	69965781	3	2	621	1	0	0	0	0	1	0	0	0	17513	1232	43	4	1732	4	WWP2	16	69965781	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	39171410	69965781	20388972	54	53998										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	24	0	0	18	24	57.14	-	-	-	T	7577120	C	T	7577120	3	4	621	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		7577120	73618090	55	53999										
TCAP	0	genome.wustl.edu	37	chr17	37821696	37821696	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgggcagaatggaaggatctGacactgtccacacggcccga	13	11	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	17	37821696	37821696	G	A	SNP	TCAP	ENST00000309889	human	ensembl	69_37n	1	known	silent	c.84	p.L28	0.538	pfam_Telethonin	pfam_Telethonin	-	no_errors	TCAP	HGNC	ENSG00000173991	23	0	0	14	10	41.67	-	-	-	A	37821696	G	A	37821696	2	1	621	1	0	0	0	0	0	0	0	1	15761	1277	45	2		2	TCAP	17	37821696	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	30244576	37821696	43373514	56	54000										
ARHGAP27	0	genome.wustl.edu	37	chr17	43481448	43481448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	cgatggagcacccctgccttGtccaaggtcttggtctaaga	11	12	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	17	43481448	43481448	G	T	SNP	ARHGAP27	ENST00000428638	human	ensembl	69_37n	-1	known	missense	c.1494	p.D498E	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_WW_Rsp5_WWP,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC	ENSG00000159314	28	0	0	6	15	71.43	-	-	-	T	43481448	G	T	43481448	3	4	621	1	0	0	0	0	1	0	0	0	878	1368	48	4	1219	4	ARHGAP27	17	43481448	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	5659752	43481448	37713762	57	54001										
NSF	0	genome.wustl.edu	37	chr17	44832925	44832925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttgctctccctgtcctgcttCgcaaaacttccttgtcacaa	5	15	2	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	17	44832925	44832925	C	T	SNP	NSF	ENST00000465370	human	ensembl	69_37n	1	putative	missense	c.506	p.S169L	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NSF	HGNC	ENSG00000073969	14	0	0	5	5	50	-	-	-	T	44832925	C	T	44832925	3	4	621	1	0	0	0	0	1	0	0	0	10744	899	31	1		1	NSF	17	44832925	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	1351477	44832925	36362285	58	54002										
AATK	0	genome.wustl.edu	37	chr17	79094515	79094515	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gaggctctgggaccaggcccGaggggcaggtgctgggctct	19	11	2	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	17	79094515	79094515	G	C	SNP	AATK	ENST00000326724	human	ensembl	69_37n	-1	known	missense	c.3221	p.S1074W	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409	11	0	0	10	11	52.38	-	-	-	C	79094515	G	C	79094515	3	2	621	1	0	0	0	0	1	0	0	0	26	1059	37	3	919	3	AATK	17	79094515	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	34261590	79094515	2100695	59	54003										
PIGN	0	genome.wustl.edu	37	chr18	59763153	59763153	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	atcgctgaaagagaactggaGaactcagtagtggcacaacc	11	9	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	18	59763153	59763153	G	T	SNP	PIGN	ENST00000357637	human	ensembl	69_37n	-1	known	missense	c.2108	p.S703Y	0.965	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563	14	0	0	25	9	26.47	-	-	-	T	59763153	G	T	59763153	3	4	621	1	0	0	0	0	1	0	0	0	11967	942	33	2	723	2	PIGN	18	59763153	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		59763153	18314095	60	54004										
FBN3	0	genome.wustl.edu	37	chr19	8131064	8131064	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	agggccggccggagctccagGatgcgctcggcccggcccag	17	16	0	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	8131064	8131064	G	A	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.8169	p.I2723	0.991	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	42	0	0	45	31	40.79	-	-	-	A	8131064	G	A	8131064	2	1	621	1	0	0	0	0	0	0	0	1	5750	1164	41	2		2	FBN3	19	8131064	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		8131064	50997919	61	54005										
MYO1F	0	genome.wustl.edu	37	chr19	8587613	8587613	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ctggctcccagggatgtggaCggagggccccggggaggcct	19	12	0	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	8587613	8587613	C	A	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	silent	c.2955	p.P985	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	38	0	0	29	17	36.96	-	-	-	A	8587613	C	A	8587613	2	1	621	1	0	0	0	0	0	0	0	1	10145	523	19	3		3	MYO1F	19	8587613	Silent	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	456549	8587613	50541370	62	54006										
MAN2B1	0	genome.wustl.edu	37	chr19	12757384	12757384	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	agaggagagtcagagtctggTctgcccccggagcaggaggc	17	10	3	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	12757384	12757384	T	C	SNP	MAN2B1	ENST00000480851	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAN2B1	HGNC	ENSG00000104774	49	0	0	64	41	39.05	-	-	-	C	12757384	T	C	12757384	1	2	621	0	1	0	0	0	0	0	0	0	9287	1682	58	5		5	MAN2B1	19	12757384	RNA	SNP	T	TCGA-BH-A5IZ-01A-11D-A27P-09	4169771	12757384	46371599	63	54007										
OR7C2	0	genome.wustl.edu	37	chr19	15053104	15053104	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gcagttacaccaccttctagGacaagtctggcagcctcggt	10	13	2	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	15053104	15053104	G	A	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	silent	c.804	p.R268	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	57	0	0	75	34	31.19	-	-	-	A	15053104	G	A	15053104	2	1	621	1	0	0	0	0	0	0	0	1	11291	1165	41	2		2	OR7C2	19	15053104	Silent	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	2295720	15053104	44075879	64	54008										
NOTCH3	0	genome.wustl.edu	37	chr19	15271763	15271765	+	In_Frame_Del	DEL	CCC	CCC	-													0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ctttggggggctgctgtgtgCcccagccgccgggtactcct							TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-11A-13D-A27P-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	1f266cd4-ef7c-434b-902b-13842442e290	19	15271763	15271765	CCC	-	DEL	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	in_frame_del	c.6676_6674	p.G2225in_frame_del	0.011:0.005:0.007	pfam_DUF3454_notch,pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	23	0	0	22	5	18.52	-	-	-	-	15271765	CCC	-	15271763	7	5	621	1	0	1	0	1	0	0	0	0	10622	739	26	0	293	0	NOTCH3	19	15271763	In_Frame_Del	DEL	CCC	TCGA-BH-A5IZ-01A-11D-A27P-09	218659	15271763	43857220	65	54009										
TMEM161A	0	genome.wustl.edu	37	chr19	19232452	19232452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	caccactgccagtcccacgcGgatagccagcttggccacag	10	17	0	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	19232452	19232452	G	A	SNP	TMEM161A	ENST00000162044	human	ensembl	69_37n	-1	known	missense	c.682	p.R228C	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545	56	0	0	48	27	36	-	-	-	A	19232452	G	A	19232452	3	1	621	1	0	0	0	0	1	0	0	0	16171	1116	39	1	777	1	TMEM161A	19	19232452	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	3960689	19232452	39896531	66	54010										
POP4	0	genome.wustl.edu	37	chr19	30097339	30097339	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgttgctgcggagtcctaacAgaaccgctacaggaatgggc	13	10	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	30097339	30097339	A	C	SNP	POP4	ENST00000590688	human	ensembl	69_37n	1	putative	silent	c.37	p.R13	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	POP4	HGNC	ENSG00000105171	22	0	0	17	10	37.04	-	-	-	C	30097339	A	C	30097339	2	2	621	1	0	0	0	0	0	0	0	1	12326	203	7	5		5	POP4	19	30097339	Silent	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	10864887	30097339	29031644	67	54011										
C19orf73	0	genome.wustl.edu	37	chr19	49622111	49622111	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ggggaaccctgcaggccgcaCtactgtctgcgtgggagtcg	16	12	1	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	49622111	49622111	C	G	SNP	C19orf73	ENST00000408991	human	ensembl	69_37n	-1	known	missense	c.169	p.V57L	0.090	NULL	NULL	-	no_errors	C19orf73	HGNC	ENSG00000221916	35	0	0	51	11	17.74	-	-	-	G	49622111	C	G	49622111	3	3	621	1	0	0	0	0	1	0	0	0	1967	565	20	4	224	4	C19orf73	19	49622111	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09	19524772	49622111	9506872	68	54012										
ZNF324	0	genome.wustl.edu	37	chr19	58983303	58983303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	acacgggcgagaagcccttcGtgtgtacgcagtgtggccgc	15	12	0	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	19	58983303	58983303	G	A	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	missense	c.1444	p.V482M	0.022	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	61	0	0	52	32	38.1	-	-	-	A	58983303	G	A	58983303	3	1	621	1	0	0	0	0	1	0	0	0	17940	1145	40	1	1454	1	ZNF324	19	58983303	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	9361192	58983303	145680	69	54013										
B4GALT5	0	genome.wustl.edu	37	chr20	48257019	48257019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aagaaatgatactcacagatAcatatacttatccaatttgg	5	7	1	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	20	48257019	48257019	A	G	SNP	B4GALT5	ENST00000371711	human	ensembl	69_37n	-1	known	missense	c.790	p.Y264H	1.000	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT5	HGNC	ENSG00000158470	34	0	0	39	27	40.91	-	-	-	G	48257019	A	G	48257019	3	3	621	1	0	0	0	0	1	0	0	0	1278	391	14	5	392	5	B4GALT5	20	48257019	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09		48257019	14768501	70	54014										
DSCAM	0	genome.wustl.edu	37	chr21	41710136	41710136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttgcacatctgaaagtttaaGagttccattgttctcaaatg	7	7	2	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	21	41710136	41710136	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.1675	p.L559F	0.392	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	59	0	0	57	47	45.19	-	-	-	A	41710136	G	A	41710136	3	1	621	1	0	0	0	0	1	0	0	0	4803	942	33	2	4467	2	DSCAM	21	41710136	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		41710136	6419759	71	54015										
SMC1B	0	genome.wustl.edu	37	chr22	45795231	45795231	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gatttaaaagggtttcaaccGatctgaaaagggaaaaatgt	10	4	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-11A-13D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	1f266cd4-ef7c-434b-902b-13842442e290	22	45795231	45795231	G	T	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	nonsense	c.857	p.S286*	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	58	0	0	32	5	13.51	-	-	-	T	45795231	G	T	45795231	4	4	621	1	0	0	0	0	0	1	0	0	14871	1059	37	3	2930	3	SMC1B	22	45795231	Nonsense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09		45795231	5509335	72	54016										
CDKL5	0	genome.wustl.edu	37	chrX	18668703	18668703	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	atgctttcagctgcccaaccCagcaatccggtaagcagaga	9	13	1	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	18668703	18668703	C	G	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.2971	p.Q991E	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	36	0	0	76	25	24.75	-	-	-	G	18668703	C	G	18668703	3	3	621	1	0	0	0	0	1	0	0	0	3186	595	21	4	3045	4	CDKL5	23	18668703	Missense_Mutation	SNP	C	TCGA-BH-A5IZ-01A-11D-A27P-09		18668703	136601857	73	54017										
MAP3K15	0	genome.wustl.edu	37	chrX	19391798	19391798	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gtgtgggcagggccaggacgAcaccgcggggaccttctgta	17	11	1	0			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	19391798	19391798	A	T	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.2789	p.V930D	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	96	0	0	145	51	26.02	-	-	-	T	19391798	A	T	19391798	3	4	621	1	0	0	0	0	1	0	0	0	9320	275	10	5	1188	5	MAP3K15	23	19391798	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	723095	19391798	135878762	74	54018										
CNKSR2	0	genome.wustl.edu	37	chrX	21581525	21581525	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	ttacaaatggatgcactgagAcaagacatcatgggcactcc	9	10	1	2			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	21581525	21581525	A	T	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.1563	p.R521S	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	39	0	0	65	11	14.47	-	-	-	T	21581525	A	T	21581525	3	4	621	1	0	0	0	0	1	0	0	0	3637	272	10	5	1613	5	CNKSR2	23	21581525	Missense_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	2189727	21581525	133689035	75	54019										
DMD	0	genome.wustl.edu	37	chrX	31187564	31187564	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tagaaagaaaactcacctgtTttcttcctcaagatctgcta	5	10	4	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	31187564	31187564	T	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.10549	p.N3517Y	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	23	0	0	52	17	24.64	-	-	-	A	31187564	T	A	31187564	3	1	621	1	0	0	0	0	1	0	0	0	4616	1841	64	5	618	5	DMD	23	31187564	Missense_Mutation	SNP	T	TCGA-BH-A5IZ-01A-11D-A27P-09	9606039	31187564	124082996	76	54020										
KCND1	0	genome.wustl.edu	37	chrX	48825564	48825564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	gagtccacactcacccaagcGtggtcatggtgacaatggta	11	11	2	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	48825564	48825564	G	A	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.1115	p.T372M	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	63	0	0	71	18	20.22	-	-	-	A	48825564	G	A	48825564	3	1	621	1	0	0	0	0	1	0	0	0	8072	1145	40	1	852	1	KCND1	23	48825564	Missense_Mutation	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	17638000	48825564	106444996	77	54021										
ATRX	0	genome.wustl.edu	37	chrX	76889994	76889994	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	tgttcactgctttatcttcaGcccctacgactgtgcctgaa	7	13	3	1			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	76889994	76889994	G	T	SNP	ATRX	ENST00000460639	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	18	0	0	13	22	62.86	-	-	-	T	76889994	G	T	76889994	1	4	621	0	1	0	0	0	0	0	0	0	1212	986	34	4		4	ATRX	23	76889994	RNA	SNP	G	TCGA-BH-A5IZ-01A-11D-A27P-09	28064430	76889994	78380566	78	54022										
CD99L2	0	genome.wustl.edu	37	chrX	149997772	149997772	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	9	0.250295252152662	1.69447453954496	1.57344064386318	1.76225352112676	0.400323058285099	0.991179622791967	0	aaagatctcaagatgagatcAtcctggattatccaggtggg	11	7	2	3			TCGA-BH-A5IZ-01A-11D-A27P-09	TCGA-BH-A5IZ-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6db0ecd-0328-4bc3-b2d6-9f1a9c8e320f	24076c1c-df28-40d1-9696-221716c279cf	X	149997772	149997772	A	G	SNP	CD99L2	ENST00000320893	human	ensembl	69_37n	-1	known	nonstop	c.436	p.*146R	0.001	NULL	NULL	-	no_errors	CD99L2	HGNC	ENSG00000102181	12	0	0	10	5	33.33	-	-	-	G	149997772	A	G	149997772	4	3	621	1	0	0	0	0	0	0	0	0	3080	232	8	5		5	CD99L2	23	149997772	Nonstop_Mutation	SNP	A	TCGA-BH-A5IZ-01A-11D-A27P-09	73107778	149997772	5272788	79	54023										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33099302	33099302	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	aagccattcatccaaaaagtGaaacagaagagactgtaagt	8	7	1	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	1	33099302	33099302	G	A	SNP	ZBTB8OS	ENST00000468695	human	ensembl	69_37n	-1	known	missense	c.307	p.H103Y	1.000	pfam_Archease_dom,superfamily_Archease_dom	pfam_Archease_dom,superfamily_Archease_dom	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261	54	0	0	30	4	11.76	-	-	-	A	33099302	G	A	33099302	3	1	622	1	0	0	0	0	1	0	0	0	17653	1290	45	2	248	2	ZBTB8OS	1	33099302	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		33099302	216151319	1	54024										
GNL2	0	genome.wustl.edu	37	chr1	38061424	38061424	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ttgtacttgggcttcaccatCttggcgacgagaccgggacc	12	12	2	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	1	38061424	38061424	C	T	SNP	GNL2	ENST00000488496	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	GNL2	HGNC	ENSG00000134697	84	0	0	48	21	30.43	-	-	-	T	38061424	C	T	38061424	1	4	622	0	1	0	0	0	0	0	0	0	6588	928	32	2		2	GNL2	1	38061424	RNA	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	4962122	38061424	211189197	2	54025										
USH2A	0	genome.wustl.edu	37	chr1	215799148	215799148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ggtgggtgtctgtgaatgtgGtgcgttccttagtcactgag	16	6	2	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	1	215799148	215799148	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.15656	p.T5219N	1.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	62	0	0	54	16	22.86	-	-	-	T	215799148	G	T	215799148	3	4	622	1	0	0	0	0	1	0	0	0	17133	1261	44	4	28	4	USH2A	1	215799148	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	177737724	215799148	33451473	3	54026										
DISP1	0	genome.wustl.edu	37	chr1	223176237	223176237	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	acagtttgtttcaggattatCttctaatggatactgtgtat	8	5	3	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	1	223176237	223176237	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.1498	p.L500F	1.000	pfam_Patched	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	84	0	0	81	28	25.45	-	-	-	T	223176237	C	T	223176237	3	4	622	1	0	0	0	0	1	0	0	0	4575	913	32	2	1524	2	DISP1	1	223176237	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	7377089	223176237	26074384	4	54027										
OR2G2	0	genome.wustl.edu	37	chr1	247752099	247752099	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	catatccatctctgcatggcCttggcatctatggcatggct	9	12	2	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	1	247752099	247752099	C	T	SNP	OR2G2	ENST00000320065	human	ensembl	69_37n	1	known	silent	c.438	p.A146	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489	34	0	0	39	6	13.33	-	-	-	T	247752099	C	T	247752099	2	4	622	1	0	0	0	0	0	0	0	1	11071	668	24	4		4	OR2G2	1	247752099	Silent	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	24575862	247752099	1498522	5	54028										
SDC1	0	genome.wustl.edu	37	chr2	20403762	20403762	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ggggtgggaggtggcgggctCctgggccgtggtggctgtgg	25	7	0	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	20403762	20403762	C	A	SNP	SDC1	ENST00000254351	human	ensembl	69_37n	-1	known	nonsense	c.439	p.E147*	0.936	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884	42	0	0	57	60	51.28	-	-	-	A	20403762	C	A	20403762	4	1	622	1	0	0	0	0	0	1	0	0	14039	864	30	2	505	2	SDC1	2	20403762	Nonsense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		20403762	222795611	6	54029										
ATAD2B	0	genome.wustl.edu	37	chr2	24092590	24092590	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tttcaaagcgttcctcatcaGaagaagttgtgtcactacta	7	9	4	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	24092590	24092590	G	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.1019	p.S340F	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	87	0	0	56	28	33.33	-	-	-	A	24092590	G	A	24092590	3	1	622	1	0	0	0	0	1	0	0	0	1076	942	33	2	3437	2	ATAD2B	2	24092590	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	3688828	24092590	219106783	7	54030										
OTOF	0	genome.wustl.edu	37	chr2	26781363	26781363	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agacagcggcttccctacctCggaaagtcactttggcgatc	10	13	1	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	26781363	26781363	C	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.77	p.R26L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	75	0	0	62	57	47.9	-	-	-	A	26781363	C	A	26781363	3	1	622	1	0	0	0	0	1	0	0	0	11376	884	31	3	6429	3	OTOF	2	26781363	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	2688773	26781363	216418010	8	54031										
TTN	0	genome.wustl.edu	37	chr2	179499204	179499204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	aatatgtttctttccatcagCgatgatatcaaatttgtcag	6	7	4	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	179499204	179499204	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34600	p.A11534T	0.925	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	33	0	0	20	6	23.08	-	-	-	T	179499204	C	T	179499204	3	4	622	1	0	0	0	0	1	0	0	0	16832	768	27	1	65921	1	TTN	2	179499204	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	152717841	179499204	63700169	9	54032										
C2orf69	0	genome.wustl.edu	37	chr2	200790463	200790463	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	taacaccttaccaagtacgtGatccaatgagatcttggatt	7	9	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	200790463	200790463	G	A	SNP	C2orf69	ENST00000319974	human	ensembl	69_37n	1	known	missense	c.1012	p.D338N	1.000	pfam_UPF0565	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074	43	0	0	39	8	17.02	-	-	-	A	200790463	G	A	200790463	3	1	622	1	0	0	0	0	1	0	0	0	2208	1290	45	2	1018	2	C2orf69	2	200790463	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	21291259	200790463	42408910	10	54033										
C2orf69	0	genome.wustl.edu	37	chr2	200790577	200790577	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	caaaggaagctccttccataGagaatcacttcagggttcat	8	10	3	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	200790577	200790577	G	C	SNP	C2orf69	ENST00000319974	human	ensembl	69_37n	1	known	missense	c.1126	p.E376Q	1.000	NULL	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074	45	0	0	39	8	17.02	-	-	-	C	200790577	G	C	200790577	3	2	622	1	0	0	0	0	1	0	0	0	2208	943	33	2	1132	2	C2orf69	2	200790577	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	114	200790577	42408796	11	54034										
KIF1A	0	genome.wustl.edu	37	chr2	241696840	241696841	+	In_Frame_Ins	INS	-	-	TCC													0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ccaggtcctcctcctcctcaINStcctcctcctcctcctcctc							TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	2	241696840	241696841	-	TCC	INS	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	in_frame_ins	c.2754_2753	p.918in_frame_insE	1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	23	0	0	14	6	30	-	-	-	TCC	241696841	-	TCC	241696840	7	5	622	1	0	1	1	0	0	0	0	0	8335	232	8	0		0	KIF1A	2	241696840	In_Frame_Ins	INS	-	TCGA-BH-A5J0-01A-11D-A27P-09	40906263	241696840	1502533	12	54035										
SLC6A11	0	genome.wustl.edu	37	chr3	10960032	10960032	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agggactgcatcatgctctgTtgcctgaacagcggcaccag	12	12	2	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	3	10960032	10960032	T	C	SNP	SLC6A11	ENST00000254488	human	ensembl	69_37n	1	known	silent	c.1014	p.C338	0.876	pfam_Na/ntran_symport,prints_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3,pfscan_Na/ntran_symport	-	no_errors	SLC6A11	HGNC	ENSG00000132164	88	0	0	137	26	15.95	-	-	-	C	10960032	T	C	10960032	2	2	622	1	0	0	0	0	0	0	0	1	14763	1731	60	5		5	SLC6A11	3	10960032	Silent	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09		10960032	187062398	13	54036										
TTC21A	0	genome.wustl.edu	37	chr3	39180104	39180104	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	atttgtggaggccattgaaaTctgcaacgatgtaagccagc	11	8	1	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	3	39180104	39180104	T	C	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.3878	p.I1293T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	55	0	0	40	12	23.08	-	-	-	C	39180104	T	C	39180104	3	2	622	1	0	0	0	0	1	0	0	0	16784	1435	50	5	3988	5	TTC21A	3	39180104	Missense_Mutation	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09	28220072	39180104	158842326	14	54037										
ACAD11	0	genome.wustl.edu	37	chr3	132378481	132378481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ggtcagcgtagcctcacgttCggccccaaagccagacaagt	11	14	2	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	3	132378481	132378481	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.115	p.E39K	0.000	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	59	0	0	36	20	35.71	-	-	-	T	132378481	C	T	132378481	3	4	622	1	0	0	0	0	1	0	0	0	109	893	31	1	2307	1	ACAD11	3	132378481	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	93198377	132378481	65643949	15	54038										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	61	0	0	27	28	50.91	-	-	-	A	178936082	G	A	178936082	3	1	622	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	46557601	178936082	19086348	16	54039										
MSX1	0	genome.wustl.edu	37	chr4	4864568	4864568	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tgtccatcgccgagcgcgcgGagttctccagctcgctcagc	12	16	2	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	4	4864568	4864568	G	T	SNP	MSX1	ENST00000382723	human	ensembl	69_37n	1	known	nonsense	c.610	p.E204*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132	48	0	0	32	51	61.45	-	-	-	T	4864568	G	T	4864568	4	4	622	1	0	0	0	0	0	1	0	0	9967	1175	41	2	616	2	MSX1	4	4864568	Nonsense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		4864568	186289708	17	54040										
SULT1B1	0	genome.wustl.edu	37	chr4	70620409	70620409	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tgatgttcttaatccagggaGagtcatttccaacattggaa	9	7	2	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	4	70620409	70620409	G	A	SNP	SULT1B1	ENST00000310613	human	ensembl	69_37n	-1	known	missense	c.256	p.L86F	0.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1B1	HGNC	ENSG00000173597	39	0	0	20	14	41.18	-	-	-	A	70620409	G	A	70620409	3	1	622	1	0	0	0	0	1	0	0	0	15467	942	33	2	658	2	SULT1B1	4	70620409	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	65755841	70620409	120533867	18	54041										
MEPE	0	genome.wustl.edu	37	chr4	88767897	88767897	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	atgtcacaaatgccttctatGttgtttgctctgtagacatg	8	8	3	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	4	88767897	88767897	G	A	SNP	MEPE	ENST00000508016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEPE	HGNC	ENSG00000152595	49	0	0	33	7	17.5	-	-	-	A	88767897	G	A	88767897	1	1	622	0	1	0	0	0	0	0	0	0	9549	1392	48	4		4	MEPE	4	88767897	RNA	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	18147488	88767897	102386379	19	54042										
SMAD1	0	genome.wustl.edu	37	chr4	146467880	146467880	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	caggcggttgcttatgaggaAccaaaacactggtgctctat	11	9	1	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	4	146467880	146467880	A	G	SNP	SMAD1	ENST00000302085	human	ensembl	69_37n	1	known	silent	c.801	p.E267	0.998	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365	55	0	0	29	9	23.68	-	-	-	G	146467880	A	G	146467880	2	3	622	1	0	0	0	0	0	0	0	1	14846	40	2	5		5	SMAD1	4	146467880	Silent	SNP	A	TCGA-BH-A5J0-01A-11D-A27P-09	57699983	146467880	44686396	20	54043										
MAP9	0	genome.wustl.edu	37	chr4	156289820	156289820	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ttggaagggaagaaggtgcaGaatgtaactccaattcttca	11	6	2	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	4	156289820	156289820	G	C	SNP	MAP9	ENST00000311277	human	ensembl	69_37n	-1	known	missense	c.626	p.S209C	0.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	175	0	0	122	17	12.23	-	-	-	C	156289820	G	C	156289820	3	2	622	1	0	0	0	0	1	0	0	0	9341	942	33	2	1357	2	MAP9	4	156289820	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	9821940	156289820	34864456	21	54044										
PCDHA2	0	genome.wustl.edu	37	chr5	140176058	140176058	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cggcgggtgggcgagcgcgcGttgtcgagctacgtttcggt	19	10	0	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	5	140176058	140176058	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	silent	c.1509	p.A503	0.047	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	113	0	0	104	49	32.03	-	-	-	A	140176058	G	A	140176058	2	1	622	1	0	0	0	0	0	0	0	1	11597	1132	40	1		1	PCDHA2	5	140176058	Silent	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		140176058	40739202	22	54045										
DPYSL3	0	genome.wustl.edu	37	chr5	146778797	146778797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cacagccacgaactggttttCgtccattttccctgtggcct	8	14	0	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	5	146778797	146778797	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	missense	c.1129	p.E377K	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	76	0	0	34	5	12.82	-	-	-	T	146778797	C	T	146778797	3	4	622	1	0	0	0	0	1	0	0	0	4783	893	31	1	599	1	DPYSL3	5	146778797	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	6602739	146778797	34136463	23	54046										
IMPG1	0	genome.wustl.edu	37	chr6	76640797	76640797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gcagcgacactccgcttcctCagtccgttcgttctttacac	7	16	2	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	76640797	76640797	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.2116	p.E706K	0.420	pfscan_EG-like_dom	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	52	0	0	41	12	22.64	-	-	-	T	76640797	C	T	76640797	3	4	622	1	0	0	0	0	1	0	0	0	7782	835	29	2	289	2	IMPG1	6	76640797	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		76640797	94474270	24	54047										
KIAA1009	0	genome.wustl.edu	37	chr6	84884479	84884479	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	atataattatcttgattcaaTttgaagagttctttttcctg	5	5	3	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	84884479	84884479	T	G	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.1992	p.K664N	0.002	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	70	0	0	38	8	17.39	-	-	-	G	84884479	T	G	84884479	3	3	622	1	0	0	0	0	1	0	0	0	8255	1490	52	5	2271	5	KIAA1009	6	84884479	Missense_Mutation	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09	8243682	84884479	86230588	25	54048										
MED23	0	genome.wustl.edu	37	chr6	131925356	131925356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ccaaagactctatttccataTagaccaataaacgactgtaa	4	10	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	131925356	131925356	T	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1736	p.Y579C	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	29	0	0	8	14	63.64	-	-	-	C	131925356	T	C	131925356	3	2	622	1	0	0	0	0	1	0	0	0	9512	1406	49	5	2455	5	MED23	6	131925356	Missense_Mutation	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09	47040877	131925356	39189711	26	54049										
MYCT1	0	genome.wustl.edu	37	chr6	153043257	153043257	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ctctcccttcttccaatatcTctcccaccatcagcacttcc	1	20	4	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	153043257	153043257	T	A	SNP	MYCT1	ENST00000367245	human	ensembl	69_37n	1	known	missense	c.577	p.S193T	0.945	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	55	0	0	30	14	31.82	-	-	-	A	153043257	T	A	153043257	3	1	622	1	0	0	0	0	1	0	0	0	10094	1551	54	5	583	5	MYCT1	6	153043257	Missense_Mutation	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09	21117901	153043257	18071810	27	54050										
MYCT1	0	genome.wustl.edu	37	chr6	153043356	153043356	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	caccgcccccacctgcctatGagtccatcatcaaggcattc	6	18	2	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	153043356	153043356	G	A	SNP	MYCT1	ENST00000367245	human	ensembl	69_37n	1	known	missense	c.676	p.E226K	1.000	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	39	0	0	21	16	43.24	-	-	-	A	153043356	G	A	153043356	3	1	622	1	0	0	0	0	1	0	0	0	10094	1291	45	2	682	2	MYCT1	6	153043356	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	99	153043356	18071711	28	54051										
TCP1	0	genome.wustl.edu	37	chr6	160210569	160210569	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agtatcgcggcccctcggccGaccggcgaccacagcagtgg	14	16	0	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	160210569	160210569	G	A	SNP	TCP1	ENST00000543532	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCP1	HGNC	ENSG00000120438	51	0	0	16	21	56.76	-	-	-	A	160210569	G	A	160210569	1	1	622	0	1	0	0	0	0	0	0	0	15804	1073	37	1		1	TCP1	6	160210569	RNA	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	7167213	160210569	10904498	29	54052										
IGF2R	0	genome.wustl.edu	37	chr6	160477534	160477534	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cagaggctgcctgtcccattCagacaacgacggatacagac	10	13	1	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	6	160477534	160477534	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	nonsense	c.2773	p.Q925*	0.000	pfam_CIMR	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	38	0	0	47	7	12.96	-	-	-	T	160477534	C	T	160477534	4	4	622	1	0	0	0	0	0	1	0	0	7630	827	29	2	2851	2	IGF2R	6	160477534	Nonsense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	266965	160477534	10637533	30	54053										
CCDC129	0	genome.wustl.edu	37	chr7	31594131	31594131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tcagcagtggctggactctgGattcttgtaagtgtttttgt	12	6	3	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	7	31594131	31594131	G	A	SNP	CCDC129	ENST00000451887	human	ensembl	69_37n	1	known	missense	c.284	p.G95E	1.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	33	0	0	16	6	27.27	-	-	-	A	31594131	G	A	31594131	3	1	622	1	0	0	0	0	1	0	0	0	2789	1174	41	2	212	2	CCDC129	7	31594131	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		31594131	127544532	31	54054										
TFR2	0	genome.wustl.edu	37	chr7	100230904	100230904	+	Frame_Shift_Del	DEL	G	G	-													0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agacgtcagggtcctccagcGgcagctgctctccgaccttc							TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	7	100230904	100230904	G	-	DEL	TFR2	ENST00000223051	human	ensembl	69_37n	-1	known	frame_shift_del	c.674	p.P225fs	0.003	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327	17	0	0	3	2	40	-	-	-	-	100230904	G	-	100230904	7	5	622	1	0	1	0	1	0	0	0	0	15906	1116	39	0	1787	0	TFR2	7	100230904	Frame_Shift_Del	DEL	G	TCGA-BH-A5J0-01A-11D-A27P-09	68636773	100230904	58907759	32	54055										
ACO1	0	genome.wustl.edu	37	chr9	32427427	32427427	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gagtcatgccttatctgtctCagcttgggtgagggagagtt	14	7	3	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	9	32427427	32427427	C	T	SNP	ACO1	ENST00000309951	human	ensembl	69_37n	1	known	nonsense	c.1477	p.Q493*	0.991	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729	183	0	0	113	59	34.3	-	-	-	T	32427427	C	T	32427427	4	4	622	1	0	0	0	0	0	1	0	0	146	827	29	2	1519	2	ACO1	9	32427427	Nonsense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		32427427	108786004	33	54056										
BAG1	0	genome.wustl.edu	37	chr9	33261117	33261117	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	taacatgacccggcaaccatCttgtattccaagtgctgaca	7	12	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	9	33261117	33261117	C	T	SNP	BAG1	ENST00000472232	human	ensembl	69_37n	-1	known	missense	c.631	p.D211N	0.998	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_BAG_domain,pfam_Ubiquitin,smart_Ubiquitin,smart_BAG_domain,pfscan_BAG_domain,pfscan_Ubiquitin_supergroup	-	no_errors	BAG1	HGNC	ENSG00000107262	31	0	0	25	4	13.79	-	-	-	T	33261117	C	T	33261117	3	4	622	1	0	0	0	0	1	0	0	0	1290	913	32	2	426	2	BAG1	9	33261117	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	833690	33261117	107952314	34	54057										
TRPM3	0	genome.wustl.edu	37	chr9	73151240	73151240	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	actcagttctgcttctcgctCtggatggcagcaagttaagt	10	10	4	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	9	73151240	73151240	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.4834	p.E1612K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	86	0	0	78	14	15.22	-	-	-	T	73151240	C	T	73151240	3	4	622	1	0	0	0	0	1	0	0	0	16683	922	32	2	374	2	TRPM3	9	73151240	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	39890123	73151240	68062191	35	54058										
ACSL5	0	genome.wustl.edu	37	chr10	114172996	114172996	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gatattcggttgctggctgaCgacatgaagactttgaagcc	12	8	0	4			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	10	114172996	114172996	C	T	SNP	ACSL5	ENST00000356116	human	ensembl	69_37n	1	known	silent	c.1182	p.D394	0.978	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142	107	0	0	85	15	15	-	-	-	T	114172996	C	T	114172996	2	4	622	1	0	0	0	0	0	0	0	1	180	535	19	1		1	ACSL5	10	114172996	Silent	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		114172996	21361751	36	54059										
FAM175B	0	genome.wustl.edu	37	chr10	126519945	126519945	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gtgcagatgttgaaaagagtGagcgagttgttgaatcttgt	14	3	1	5			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	10	126519945	126519945	G	A	SNP	FAM175B	ENST00000298492	human	ensembl	69_37n	1	known	missense	c.691	p.E231K	1.000	NULL	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660	65	0	0	51	9	15	-	-	-	A	126519945	G	A	126519945	3	1	622	1	0	0	0	0	1	0	0	0	5538	1291	45	2	721	2	FAM175B	10	126519945	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	12346949	126519945	9014802	37	54060										
MTG1	0	genome.wustl.edu	37	chr10	135233088	135233088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gcagaaggtgaaggtgctcaCgggcacgggtgagtgaggtc	19	7	1	4			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	10	135233088	135233088	C	T	SNP	MTG1	ENST00000317502	human	ensembl	69_37n	1	known	missense	c.857	p.T286M	0.892	pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	pfam_GTP_binding_domain,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	30	0	0	41	11	21.15	-	-	-	T	135233088	C	T	135233088	3	4	622	1	0	0	0	0	1	0	0	0	9998	536	19	1	895	1	MTG1	10	135233088	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	8713143	135233088	301659	38	54061										
SLC5A12	0	genome.wustl.edu	37	chr11	26720016	26720016	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tctttaaagtgagagtacatGattaagccagagaagacagc	10	6	1	4			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	11	26720016	26720016	G	C	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.888	p.I296M	0.969	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	42	0	0	27	8	22.86	-	-	-	C	26720016	G	C	26720016	3	2	622	1	0	0	0	0	1	0	0	0	14753	1280	45	2	1004	2	SLC5A12	11	26720016	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		26720016	108286500	39	54062										
AHNAK	0	genome.wustl.edu	37	chr11	62288755	62288755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	attttgggggccttgatgttCatctctggcatcttgaactt	10	8	3	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	11	62288755	62288755	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.13134	p.M4378I	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	106	0	0	64	39	37.86	-	-	-	T	62288755	C	T	62288755	3	4	622	1	0	0	0	0	1	0	0	0	414	826	29	2	4658	2	AHNAK	11	62288755	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	35568739	62288755	72717761	40	54063										
CAPN1	0	genome.wustl.edu	37	chr11	64974024	64974024	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agcagttcatcaacctgcgaGaggtcagcacccgcttccgc	10	15	3	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	11	64974024	64974024	G	A	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.1444	p.E482K	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	86	0	0	94	28	22.95	-	-	-	A	64974024	G	A	64974024	3	1	622	1	0	0	0	0	1	0	0	0	2647	943	33	2	1490	2	CAPN1	11	64974024	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	2685269	64974024	70032492	41	54064										
DNAJB13	0	genome.wustl.edu	37	chr11	73675980	73675980	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ctttggggggctccagggccGaggggtcaagaagcaggacc	18	10	1	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	11	73675980	73675980	G	C	SNP	DNAJB13	ENST00000339764	human	ensembl	69_37n	1	known	missense	c.392	p.R131P	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB13	HGNC	ENSG00000187726	48	0	0	18	16	47.06	-	-	-	C	73675980	G	C	73675980	3	2	622	1	0	0	0	0	1	0	0	0	4653	1058	37	3	406	3	DNAJB13	11	73675980	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	8701956	73675980	61330536	42	54065										
TRPC6	0	genome.wustl.edu	37	chr11	101342870	101342870	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	aatgtattgagattatacctCaatttcctggaatgaactgt	7	6	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	11	101342870	101342870	C	G	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.2203	p.E735Q	1.000	prints_TRPC_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	22	0	0	13	10	43.48	-	-	-	G	101342870	C	G	101342870	3	3	622	1	0	0	0	0	1	0	0	0	16679	835	29	2	616	2	TRPC6	11	101342870	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	27666890	101342870	33663646	43	54066										
WNK1	0	genome.wustl.edu	37	chr12	970325	970325	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	aagcaggaagagagcagtctCaaacagcaggtagaacaatc	11	8	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	12	970325	970325	C	G	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.1767	p.L589	0.681	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	43	0	0	18	8	30.77	-	-	-	G	970325	C	G	970325	2	3	622	1	0	0	0	0	0	0	0	1	17474	813	29	2		2	WNK1	12	970325	Silent	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		970325	132881570	44	54067										
FGFR1OP2	0	genome.wustl.edu	37	chr12	27107176	27107176	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	atgacgatgcagcagaatctCtgattgagcaaaccacagct	9	10	1	4			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	12	27107176	27107176	C	T	SNP	FGFR1OP2	ENST00000229395	human	ensembl	69_37n	1	known	silent	c.85	p.L29	1.000	pfam_SIKE	pfam_SIKE,superfamily_DNA-bd_dom_put	-	no_errors	FGFR1OP2	HGNC	ENSG00000111790	64	0	0	43	19	30.65	-	-	-	T	27107176	C	T	27107176	2	4	622	1	0	0	0	0	0	0	0	1	5911	912	32	2		2	FGFR1OP2	12	27107176	Silent	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	26136851	27107176	106744719	45	54068										
DBX2	0	genome.wustl.edu	37	chr12	45429829	45429829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agcagtggaggatgcagggcGccgacaggacccaccgcagc	16	13	0	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	12	45429829	45429829	G	A	SNP	DBX2	ENST00000332700	human	ensembl	69_37n	-1	known	missense	c.472	p.R158C	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	41	0	0	32	21	39.62	-	-	-	A	45429829	G	A	45429829	3	1	622	1	0	0	0	0	1	0	0	0	4292	1087	38	1	559	1	DBX2	12	45429829	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	18322653	45429829	88422066	46	54069										
SUDS3	0	genome.wustl.edu	37	chr12	118839610	118839610	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gaacagatcatggaggatctGagaacattaaataaggtacg	11	5	2	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	12	118839610	118839610	G	C	SNP	SUDS3	ENST00000397564	human	ensembl	69_37n	1	known	silent	c.663	p.L221	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707	61	0	0	49	8	14.04	-	-	-	C	118839610	G	C	118839610	2	2	622	1	0	0	0	0	0	0	0	1	15458	1277	45	2		2	SUDS3	12	118839610	Silent	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	73409781	118839610	15012285	47	54070										
ACADS	0	genome.wustl.edu	37	chr12	121177129	121177129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tcctgggcggcatgggctacGtgacagagatgccggcagag	17	10	0	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	12	121177129	121177129	G	T	SNP	ACADS	ENST00000242592	human	ensembl	69_37n	1	known	missense	c.1117	p.V373L	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971	48	0	0	19	5	20.83	-	-	-	T	121177129	G	T	121177129	3	4	622	1	0	0	0	0	1	0	0	0	114	1145	40	3	1155	3	ACADS	12	121177129	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	2337519	121177129	12674766	48	54071										
LCP1	0	genome.wustl.edu	37	chr13	46705069	46705069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	gcagacttgtactaatcttcGggtcctatgcagagacacag	10	10	1	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	13	46705069	46705069	G	A	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	missense	c.1631	p.P544L	0.001	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	38	0	0	14	4	22.22	-	-	-	A	46705069	G	A	46705069	3	1	622	1	0	0	0	0	1	0	0	0	8745	1116	39	1	260	1	LCP1	13	46705069	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		46705069	68464809	49	54072										
LTK	0	genome.wustl.edu	37	chr15	41804458	41804458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cgcccgcggctccgtaggctGagatcctgcggggaacggac	16	14	0	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	15	41804458	41804458	G	A	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.365	p.S122L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	19	0	0	20	12	37.5	-	-	-	A	41804458	G	A	41804458	3	1	622	1	0	0	0	0	1	0	0	0	9146	1294	45	2	2297	2	LTK	15	41804458	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		41804458	60726934	50	54073										
TBC1D2B	0	genome.wustl.edu	37	chr15	78316777	78316777	+	Frame_Shift_Del	DEL	A	A	-													0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tgatcatccttttggtgcagAagctcgagcgtgtcctttgg							TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	15	78316777	78316777	A	-	DEL	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	frame_shift_del	c.1191	p.L398fs	0.007	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	58	0	0	51	8	13.56	-	-	-	-	78316777	A	-	78316777	7	5	622	1	0	1	0	1	0	0	0	0	15711	233	9	0	1732	0	TBC1D2B	15	78316777	Frame_Shift_Del	DEL	A	TCGA-BH-A5J0-01A-11D-A27P-09	36512319	78316777	24214615	51	54074										
SV2B	0	genome.wustl.edu	37	chr15	91769555	91769555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tcccagtgatggctattaccGcggcaatgagtccaacccag	10	13	0	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	15	91769555	91769555	G	A	SNP	SV2B	ENST00000330276	human	ensembl	69_37n	1	known	missense	c.62	p.R21H	0.938	tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2B	HGNC	ENSG00000185518	37	0	0	33	23	41.07	-	-	-	A	91769555	G	A	91769555	3	1	622	1	0	0	0	0	1	0	0	0	15509	1087	38	1	64	1	SV2B	15	91769555	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	13452778	91769555	10761837	52	54075										
IL32	0	genome.wustl.edu	37	chr16	3131810	3131810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cagacctggtggcacggggtTctggcctgggtgaaggagaa	18	8	1	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	16	3131810	3131810	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	1	putative	silent	c.516	p.V172	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	18	0	0	29	9	23.68	-	-	-	C	3131810	T	C	3131810	2	2	622	1	0	0	0	0	0	0	0	1	7746	1798	62	5		5	IL32	16	3131810	Silent	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09		3131810	87222943	53	54076										
PRKCB	0	genome.wustl.edu	37	chr16	24226123	24226123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	actctgaatttttaaaacccGaagtcaagagctaagtagat	7	7	2	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	16	24226123	24226123	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.2008	p.E670K	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	27	0	0	16	7	30.43	-	-	-	A	24226123	G	A	24226123	3	1	622	1	0	0	0	0	1	0	0	0	12589	1059	37	1	2074	1	PRKCB	16	24226123	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	21094313	24226123	66128630	54	54077										
TP53	0	genome.wustl.edu	37	chr17	7577077	7577077	+	Silent	SNP	C	C	T													0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tcccctttcttgcggagattCtcttcctctgtgcgccggtc							TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	17	7577077	7577077	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	silent	c.861	p.E287	0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0	19	23	54.76	-	-	-	T	7577077	C	T	7577077	2	4	622	1	0	0	0	0	0	0	0	1	16477	912	32	2		2	TP53	17	7577077	Silent	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		7577077	73618133	55	54078	429	2								
TP53	0	genome.wustl.edu	37	chr17	7577085	7577085	+	Missense_Mutation	SNP	C	C	T													0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cttgcggagattctcttcctCtgtgcgccggtctctcccag							TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	17	7577085	7577085	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.853	p.E285K	0.995	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	54	0	0	18	23	56.1	-	-	-	T	7577085	C	T	7577085	3	4	622	1	0	0	0	0	1	0	0	0	16477	922	32	2	433	2	TP53	17	7577085	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09	8	7577085	73618125	56	54079	429	2								
LILRA4	0	genome.wustl.edu	37	chr19	54848842	54848842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	agggcgctgggggaggccatCggccccctccttgtacagag	16	13	0	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	19	54848842	54848842	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.781	p.D261N	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	62	0	0	79	20	20.2	-	-	-	T	54848842	C	T	54848842	3	4	622	1	0	0	0	0	1	0	0	0	8842	884	31	1	734	1	LILRA4	19	54848842	Missense_Mutation	SNP	C	TCGA-BH-A5J0-01A-11D-A27P-09		54848842	4280141	57	54080										
PLCB1	0	genome.wustl.edu	37	chr20	8665692	8665692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ctcagcccctttctcactatTtcattaattcctcgcacaac	2	16	3	0			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	20	8665692	8665692	T	C	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.976	p.F326L	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	52	0	0	30	7	18.92	-	-	-	C	8665692	T	C	8665692	3	2	622	1	0	0	0	0	1	0	0	0	12101	1841	64	5	1014	5	PLCB1	20	8665692	Missense_Mutation	SNP	T	TCGA-BH-A5J0-01A-11D-A27P-09		8665692	54359828	58	54081										
DSN1	0	genome.wustl.edu	37	chr20	35386557	35386557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	atcccaagtctgacgttctaAagaaaacctgtaagaatcag	7	9	3	3			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	20	35386557	35386557	A	C	SNP	DSN1	ENST00000373745	human	ensembl	69_37n	-1	known	missense	c.658	p.L220V	0.998	pfam_Mtw1_DSN1	pfam_Mtw1_DSN1	-	no_errors	DSN1	HGNC	ENSG00000149636	22	0	0	12	7	36.84	-	-	-	C	35386557	A	C	35386557	3	2	622	1	0	0	0	0	1	0	0	0	4815	11	1	5	428	5	DSN1	20	35386557	Missense_Mutation	SNP	A	TCGA-BH-A5J0-01A-11D-A27P-09	26720865	35386557	27638963	59	54082										
CDH4	0	genome.wustl.edu	37	chr20	60485538	60485538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tcgcaaacctcacggtgatgGaccgagatcagccccactct	9	15	3	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	20	60485538	60485538	G	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.1249	p.D417N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	29	0	0	40	13	24.53	-	-	-	A	60485538	G	A	60485538	3	1	622	1	0	0	0	0	1	0	0	0	3141	1174	41	2	1283	2	CDH4	20	60485538	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	25098981	60485538	2539982	60	54083										
TEX13A	0	genome.wustl.edu	37	chrX	104464756	104464756	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	ccctgagcttcttcaggtctGatgccaaggcctgtgcggct	12	13	3	2			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	X	104464756	104464756	G	A	SNP	TEX13A	ENST00000413579	human	ensembl	69_37n	-1	known	missense	c.326	p.S109L	0.002	NULL	pfam_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	TEX13A	HGNC	ENSG00000133149	58	0	0	37	11	22.92	-	-	-	A	104464756	G	A	104464756	3	1	622	1	0	0	0	0	1	0	0	0	15871	1294	45	2	913	2	TEX13A	23	104464756	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09		104464756	50805804	61	54084										
SLITRK4	0	genome.wustl.edu	37	chrX	142717799	142717799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	cagcttcttcgcatttaaagGtttcggtatcagttcagaca	8	9	3	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	X	142717799	142717799	G	T	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.1126	p.P376T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	61	0	0	49	28	36.36	-	-	-	T	142717799	G	T	142717799	3	4	622	1	0	0	0	0	1	0	0	0	14834	1261	44	4	1391	4	SLITRK4	23	142717799	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	38253043	142717799	12552761	62	54085										
F8	0	genome.wustl.edu	37	chrX	154157956	154157956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.403225806451613	25	8.89730283164487e-09	3.66253644314869	5.27405247813411	3.3402332361516	0.000543508349402881	0.0147653101587783	18	tgtagtctatctgtgtgaggGtgctcggggtcaaatgtttc	14	6	3	1			TCGA-BH-A5J0-01A-11D-A27P-09	TCGA-BH-A5J0-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2273518-7fe0-4c1e-85f6-5c5ef7bbdcab	213426e8-ddbf-4920-813e-74f7f68823fe	X	154157956	154157956	G	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.4109	p.T1370N	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	87	0	0	63	41	39.42	-	-	-	T	154157956	G	T	154157956	3	4	622	1	0	0	0	0	1	0	0	0	5387	1261	44	4	3026	4	F8	23	154157956	Missense_Mutation	SNP	G	TCGA-BH-A5J0-01A-11D-A27P-09	11440157	154157956	1112604	63	54086										
USP48	0	genome.wustl.edu	37	chr1	22084186	22084186	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctctcacagttgggatcatcGatgttatgaaaactattttc	7	8	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	22084186	22084186	G	T	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	silent	c.225	p.I75	0.729	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	254	0	0	238	52	17.93	-	-	-	T	22084186	G	T	22084186	2	4	623	1	0	0	0	0	0	0	0	1	17176	1048	37	3		3	USP48	1	22084186	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		22084186	227166435	1	54087										
MEAF6	0	genome.wustl.edu	37	chr1	37979110	37979110	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tagcttccctcaaaagcataGatctgtcgctccaaatttgc	6	12	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	37979110	37979110	G	C	SNP	MEAF6	ENST00000373075	human	ensembl	69_37n	-1	known	missense	c.120	p.I40M	1.000	pfam_Hist_AcTrfase_NuA4_cplx	pfam_Hist_AcTrfase_NuA4_cplx	-	no_errors	MEAF6	HGNC	ENSG00000163875	164	0	0	246	63	20.32	-	-	-	C	37979110	G	C	37979110	3	2	623	1	0	0	0	0	1	0	0	0	9492	932	33	2	513	2	MEAF6	1	37979110	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	15894924	37979110	211271511	2	54088										
LRRC41	0	genome.wustl.edu	37	chr1	46752022	46752022	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcaccctgcagcatgttacaGatggtgagctgtcggacatg	13	10	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	46752022	46752022	G	C	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.507	p.I169M	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	39	0	0	65	15	18.75	-	-	-	C	46752022	G	C	46752022	3	2	623	1	0	0	0	0	1	0	0	0	9065	932	33	2	1959	2	LRRC41	1	46752022	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	8772912	46752022	202498599	3	54089										
IGSF3	0	genome.wustl.edu	37	chr1	117122205	117122205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agcgaagcctgccctcccaaGgactgccctctgggccaaag	11	16	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	117122205	117122205	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	missense	c.3203	p.P1068L	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	38	0	0	70	28	28	-	-	-	A	117122205	G	A	117122205	3	1	623	1	0	0	0	0	1	0	0	0	7655	1000	35	4	449	4	IGSF3	1	117122205	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	70370183	117122205	132128416	4	54090										
TOR3A	0	genome.wustl.edu	37	chr1	179054768	179054768	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctttcctgtccttaggcttaGagtgggacctgaatgtgcgg	13	9	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	179054768	179054768	G	A	SNP	TOR3A	ENST00000367627	human	ensembl	69_37n	1	known	missense	c.379	p.E127K	0.001	pfam_Torsin	pfam_Torsin	-	no_errors	TOR3A	HGNC	ENSG00000186283	58	0	0	97	31	24.22	-	-	-	A	179054768	G	A	179054768	3	1	623	1	0	0	0	0	1	0	0	0	16472	943	33	2	389	2	TOR3A	1	179054768	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	61932563	179054768	70195853	5	54091										
LHX4	0	genome.wustl.edu	37	chr1	180241004	180241004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	cagaagggccaaagagaaacGcctgaagaaggatgcagggc	15	8	0	4			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	180241004	180241004	G	A	SNP	LHX4	ENST00000263726	human	ensembl	69_37n	1	known	missense	c.641	p.R214H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX4	HGNC	ENSG00000121454	107	0	0	91	16	14.95	-	-	-	A	180241004	G	A	180241004	3	1	623	1	0	0	0	0	1	0	0	0	8828	1087	38	1	659	1	LHX4	1	180241004	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1186236	180241004	69009617	6	54092										
DHX9	0	genome.wustl.edu	37	chr1	182853847	182853847	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gtaaccaaacaacctgctatCatcagccagttggaccccgt	7	14	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	182853847	182853847	C	T	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	silent	c.3360	p.I1120	0.997	NULL	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	135	0	0	201	58	22.39	-	-	-	T	182853847	C	T	182853847	2	4	623	1	0	0	0	0	0	0	0	1	4552	816	29	2		2	DHX9	1	182853847	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	2612843	182853847	66396774	7	54093										
SRGAP2	0	genome.wustl.edu	37	chr1	206634438	206634438	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctacgggaactagaacggcaGagcagtgtcaaacacacccc	10	13	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	206634438	206634438	G	C	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	missense	c.2629	p.E877Q	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	64	0	0	125	17	11.97	-	-	-	C	206634438	G	C	206634438	3	2	623	1	0	0	0	0	1	0	0	0	15237	933	33	2	2711	2	SRGAP2	1	206634438	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	23780591	206634438	42616183	8	54094										
FAM71A	0	genome.wustl.edu	37	chr1	212798330	212798330	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	caactgtacaagggggagtaCgatatattcaagtatgcacc	10	8	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	212798330	212798330	C	T	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	silent	c.111	p.Y37	0.030	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	72	0	0	241	52	17.75	-	-	-	T	212798330	C	T	212798330	2	4	623	1	0	0	0	0	0	0	0	1	5652	547	19	1		1	FAM71A	1	212798330	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	6163892	212798330	36452291	9	54095										
USH2A	0	genome.wustl.edu	37	chr1	216138777	216138777	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccctgtgttttgacaaacacAtttactgttccttcaggagg	8	10	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	1	216138777	216138777	A	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.7002	p.N2334K	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	190	0	0	209	48	18.68	-	-	-	C	216138777	A	C	216138777	3	2	623	1	0	0	0	0	1	0	0	0	17133	214	8	5	8750	5	USH2A	1	216138777	Missense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	3340447	216138777	33111844	10	54096										
XDH	0	genome.wustl.edu	37	chr2	31621458	31621458	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccttggaaggcattctcaatCtcctccatggtgggctcggg	12	12	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	31621458	31621458	C	G	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.414	p.E138D	0.998	pfam_2Fe-2S-bd,superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	89	0	0	116	31	21.09	-	-	-	G	31621458	C	G	31621458	3	3	623	1	0	0	0	0	1	0	0	0	17523	912	32	2	3715	2	XDH	2	31621458	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		31621458	211577915	11	54097										
SMYD1	0	genome.wustl.edu	37	chr2	88409999	88409999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggccgagcccagcaatgagCcatccccagctctgttccac	9	17	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	88409999	88409999	C	G	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	missense	c.1441	p.P481A	0.978	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	52	0	0	140	59	29.5	-	-	-	G	88409999	C	G	88409999	3	3	623	1	0	0	0	0	1	0	0	0	14910	739	26	4	1479	4	SMYD1	2	88409999	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	56788541	88409999	154789374	12	54098										
CKAP2L	0	genome.wustl.edu	37	chr2	113518307	113518307	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tacagatttagaaggtggttGattctggcaattattcttgg	11	4	2	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	113518307	113518307	G	C	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.139	p.Q47E	0.946	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	171	0	0	74	14	15.91	-	-	-	C	113518307	G	C	113518307	3	2	623	1	0	0	0	0	1	0	0	0	3473	1299	45	2	2126	2	CKAP2L	2	113518307	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	25108308	113518307	129681066	13	54099										
GALNT13	0	genome.wustl.edu	37	chr2	155265555	155265555	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ggccgcaaggaaaatgaaaaAgtgggtatattcaactgtca	11	6	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	155265555	155265555	A	T	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	missense	c.1356	p.K452N	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	274	0	0	201	70	25.74	-	-	-	T	155265555	A	T	155265555	3	4	623	1	0	0	0	0	1	0	0	0	6261	69	3	5	1390	5	GALNT13	2	155265555	Missense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	41747248	155265555	87933818	14	54100										
ICA1L	0	genome.wustl.edu	37	chr2	203661619	203661619	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gaaatgattcttaccattttCagagttagaaaactgaggtg	9	5	2	4			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	203661619	203661619	C	G	SNP	ICA1L	ENST00000358299	human	ensembl	69_37n	-1	known	missense	c.979	p.E327Q	1.000	pfam_Islet_autoAg_Ica1_C	pfam_Islet_autoAg_Ica1_C,pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596	137	0	0	78	25	24.27	-	-	-	G	203661619	C	G	203661619	3	3	623	1	0	0	0	0	1	0	0	0	7532	835	29	2	485	2	ICA1L	2	203661619	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	48396064	203661619	39537754	15	54101										
CPS1	0	genome.wustl.edu	37	chr2	211512678	211512678	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggtgtcaagatcatgggcaCaagccccctgcagatcgaca	11	12	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	211512678	211512678	C	G	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.3251	p.T1084R	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	67	0	0	110	38	25.68	-	-	-	G	211512678	C	G	211512678	3	3	623	1	0	0	0	0	1	0	0	0	3853	478	17	4	3357	4	CPS1	2	211512678	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	7851059	211512678	31686695	16	54102										
IRS1	0	genome.wustl.edu	37	chr2	227662969	227662969	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ttcaggatcacttgccagacCtctttgaatgcgggtcctgg	11	11	3	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	227662969	227662969	C	T	SNP	IRS1	ENST00000305123	human	ensembl	69_37n	-1	known	silent	c.486	p.E162	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	11	0	0	29	7	19.44	-	-	-	T	227662969	C	T	227662969	2	4	623	1	0	0	0	0	0	0	0	1	7894	680	24	4		4	IRS1	2	227662969	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	16150291	227662969	15536404	17	54103										
AGXT	0	genome.wustl.edu	37	chr2	241808313	241808313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	acaagctgctggtgacccccCccaaggccctgctcaagccc	9	19	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	2	241808313	241808313	C	G	SNP	AGXT	ENST00000307503	human	ensembl	69_37n	1	known	missense	c.31	p.P11A	0.659	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT	HGNC	ENSG00000172482	32	0	0	21	13	38.24	-	-	-	G	241808313	C	G	241808313	3	3	623	1	0	0	0	0	1	0	0	0	404	623	22	4	33	4	AGXT	2	241808313	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	14145344	241808313	1391060	18	54104										
ITIH4	0	genome.wustl.edu	37	chr3	52850986	52850986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	accacgtgttcaggggatgcGtgaacccataccagggggtt	14	10	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	3	52850986	52850986	G	A	SNP	ITIH4	ENST00000441637	human	ensembl	69_37n	-1	novel	missense	c.1750	p.R584C	0.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITIH4	HGNC	ENSG00000055955	87	0	0	84	51	37.5	-	-	-	A	52850986	G	A	52850986	3	1	623	1	0	0	0	0	1	0	0	0	7960	1136	40	1	423	1	ITIH4	3	52850986	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		52850986	145171444	19	54105										
SELT	0	genome.wustl.edu	37	chr3	150321284	150321284	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccgctgctcaagttccagatTtggtgagtatgtgcactggg	13	9	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	3	150321284	150321284	T	A	SNP	SELT	ENST00000492132	human	ensembl	69_37n	1	known	silent	c.135	p.I45	1.000	NULL	NULL	-	no_errors	RP11-392O18.1	Clone_based_vega_gene	ENSG00000198843	21	0	0	24	13	35.14	-	-	-	A	150321284	T	A	150321284	2	1	623	1	0	0	0	0	0	0	0	1	14110	1829	64	5		5	SELT	3	150321284	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	97470298	150321284	47701146	20	54106										
ECE2	0	genome.wustl.edu	37	chr3	184003269	184003269	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tctggtctggttgtcagcatCctgaacaattacctgatctg	9	10	4	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	3	184003269	184003269	C	A	SNP	ECE2	ENST00000402825	human	ensembl	69_37n	1	known	silent	c.1506	p.I502	0.204	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	100	0	0	154	40	20.62	-	-	-	A	184003269	C	A	184003269	2	1	623	1	0	0	0	0	0	0	0	1	4925	845	30	2		2	ECE2	3	184003269	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	33681985	184003269	14019161	21	54107										
LEPREL1	0	genome.wustl.edu	37	chr3	189704666	189704666	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tttcacaaacattgttaaatCctagagaaaaagaagtaaag	6	5	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	3	189704666	189704666	C	G	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	missense	c.1099	p.D367H	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	85	0	0	78	9	10.34	-	-	-	G	189704666	C	G	189704666	3	3	623	1	0	0	0	0	1	0	0	0	8784	869	30	2	1067	2	LEPREL1	3	189704666	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	5701397	189704666	8317764	22	54108										
KIAA0232	0	genome.wustl.edu	37	chr4	6865611	6865611	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aaggccattactatggaaaaTcagagcttgagtctggaaaa	10	6	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	4	6865611	6865611	T	G	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.3502	p.S1168A	0.961	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	74	0	0	42	5	10.2	-	-	-	G	6865611	T	G	6865611	3	3	623	1	0	0	0	0	1	0	0	0	8215	1435	50	5	3520	5	KIAA0232	4	6865611	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09		6865611	184288665	23	54109										
APC	0	genome.wustl.edu	37	chr5	112179630	112179630	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tagtgggactgttgctgccaGagtgactccttttaattaca	10	8	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	5	112179630	112179630	G	C	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.8339	p.R2780T	1.000	pfam_EB1-bd	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	74	0	0	91	14	13.21	-	-	-	C	112179630	G	C	112179630	3	2	623	1	0	0	0	0	1	0	0	0	764	942	33	2	8397	2	APC	5	112179630	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		112179630	68735630	24	54110										
KCNN2	0	genome.wustl.edu	37	chr5	113740461	113740461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aatacacgttttgttatgaaGactttaatgactatatgccc	6	7	0	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	5	113740461	113740461	G	C	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	1	known	missense	c.909	p.K303N	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	141	0	0	124	16	11.43	-	-	-	C	113740461	G	C	113740461	3	2	623	1	0	0	0	0	1	0	0	0	8133	933	33	2	919	2	KCNN2	5	113740461	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1560831	113740461	67174799	25	54111										
FBN2	0	genome.wustl.edu	37	chr5	127686601	127686601	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ggctcccccaggcggctccgAgggtggcacagcattcagat	14	14	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	5	127686601	127686601	A	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.2771	p.L924H	0.877	pirsf_Fibrillin,pfam_TB_dom,superfamily_TB_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	102	0	0	53	27	33.33	-	-	-	T	127686601	A	T	127686601	3	4	623	1	0	0	0	0	1	0	0	0	5749	304	11	5	6147	5	FBN2	5	127686601	Missense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	13946140	127686601	53228659	26	54112										
FAM13B	0	genome.wustl.edu	37	chr5	137284667	137284667	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gatatcttctggaagacaccTctcaatacgtttttctttca	5	10	5	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	5	137284667	137284667	T	C	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.2071	p.R691G	0.997	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	205	0	0	103	48	31.79	-	-	-	C	137284667	T	C	137284667	3	2	623	1	0	0	0	0	1	0	0	0	5493	1550	54	5	704	5	FAM13B	5	137284667	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	9598066	137284667	43630593	27	54113										
FAM65B	0	genome.wustl.edu	37	chr6	24850064	24850064	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	caggttcagtttgatggtacCaaggtcattgatgtcgacag	12	7	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	24850064	24850064	C	G	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.913	p.G305R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	85	0	0	160	67	29.52	-	-	-	G	24850064	C	G	24850064	3	3	623	1	0	0	0	0	1	0	0	0	5645	594	21	4	2355	4	FAM65B	6	24850064	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		24850064	146265003	28	54114										
MAPK13	0	genome.wustl.edu	37	chr6	36103593	36103593	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	atggggatggagttcagtgaGgagaagatccagtacctggt	16	5	1	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	36103593	36103593	G	A	SNP	MAPK13	ENST00000211287	human	ensembl	69_37n	1	known	silent	c.372	p.E124	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_p38,prints_MAPK_JNK	-	no_errors	MAPK13	HGNC	ENSG00000156711	204	0	0	500	126	20.03	-	-	-	A	36103593	G	A	36103593	2	1	623	1	0	0	0	0	0	0	0	1	9346	991	35	4		4	MAPK13	6	36103593	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	11253529	36103593	135011474	29	54115										
DAAM2	0	genome.wustl.edu	37	chr6	39824117	39824117	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agccaccatggcctgggcttCctgtgctgcttcgggggcag	15	13	0	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	39824117	39824117	C	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	missense	c.39	p.F13L	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	65	0	0	59	47	43.93	-	-	-	A	39824117	C	A	39824117	3	1	623	1	0	0	0	0	1	0	0	0	4248	854	30	2	41	2	DAAM2	6	39824117	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	3720524	39824117	131290950	30	54116										
NCR2	0	genome.wustl.edu	37	chr6	41309625	41309625	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcctcccactgcaggagccaGacaagcccctgagtctccat	9	17	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	41309625	41309625	G	T	SNP	NCR2	ENST00000373089	human	ensembl	69_37n	1	known	missense	c.488	p.R163I	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NCR2	HGNC	ENSG00000096264	96	0	0	87	60	40.82	-	-	-	T	41309625	G	T	41309625	3	4	623	1	0	0	0	0	1	0	0	0	10310	942	33	2	498	2	NCR2	6	41309625	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1485508	41309625	129805442	31	54117										
NT5E	0	genome.wustl.edu	37	chr6	86197087	86197087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcagacattaacaaatggagGataaaattggataattattc	8	4	0	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	86197087	86197087	G	A	SNP	NT5E	ENST00000416334	human	ensembl	69_37n	1	known	missense	c.278	p.G93E	0.624	NULL	pfam_5'-Nucleotdase_C,superfamily_5'-Nucleotdase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5E	HGNC	ENSG00000135318	142	0	0	85	36	29.75	-	-	-	A	86197087	G	A	86197087	3	1	623	1	0	0	0	0	1	0	0	0	10766	1165	41	2	1002	2	NT5E	6	86197087	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	44887462	86197087	84917980	32	54118										
PKIB	0	genome.wustl.edu	37	chr6	123038978	123038978	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aaaatgactgacgtggagtcTggggtcgccaattttgcatc	12	8	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	6	123038978	123038978	T	C	SNP	PKIB	ENST00000368446	human	ensembl	69_37n	1	known	silent	c.66	p.S22	0.271	pfam_cAMP_dep_PKI,pirsf_cAMP_dep_PKI	pfam_cAMP_dep_PKI,pirsf_cAMP_dep_PKI	-	no_errors	PKIB	HGNC	ENSG00000135549	53	0	0	49	25	33.33	-	-	-	C	123038978	T	C	123038978	2	2	623	1	0	0	0	0	0	0	0	1	12048	1567	55	5		5	PKIB	6	123038978	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	36841891	123038978	48076089	33	54119										
SCIN	0	genome.wustl.edu	37	chr7	12620847	12620847	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tcatcattgaccttggcaccGtaagtttcatatatacacat	5	10	3	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	7	12620847	12620847	G	A	SNP	SCIN	ENST00000297029	human	ensembl	69_37n	1	known	splice_site	c.516+1	e3+1	1.000	-	-	-	no_errors	SCIN	HGNC	ENSG00000006747	91	0	0	145	52	26.26	-	-	-	A	12620847	G	A	12620847	5	1	623	1	0	0	0	0	0	0	1	0	13993	1159	40	1	527	1	SCIN	7	12620847	Splice_Site	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		12620847	146517816	34	54120										
IKZF1	0	genome.wustl.edu	37	chr7	50450348	50450348	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agcccttcaaatgccacctcTgcaactacgcctgccgccgg	8	18	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	7	50450348	50450348	T	A	SNP	IKZF1	ENST00000331340	human	ensembl	69_37n	1	known	missense	c.532	p.C178S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811	38	0	0	55	21	27.63	-	-	-	A	50450348	T	A	50450348	3	1	623	1	0	0	0	0	1	0	0	0	7668	1580	55	5	546	5	IKZF1	7	50450348	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	37829501	50450348	108688315	35	54121										
PLXNA4	0	genome.wustl.edu	37	chr7	131887475	131887475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gccactggctctcctgggcaGggcagtgctggcgcagggtg	18	12	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	7	131887475	131887475	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.2516	p.P839L	0.992	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	25	0	0	60	16	21.05	-	-	-	A	131887475	G	A	131887475	3	1	623	1	0	0	0	0	1	0	0	0	12196	1000	35	4	3252	4	PLXNA4	7	131887475	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	81437127	131887475	27251188	36	54122										
ZNF862	0	genome.wustl.edu	37	chr7	149557807	149557807	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggagactttaaaataccatGaagtcagcaaagcgcacagg	10	8	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	7	149557807	149557807	G	C	SNP	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	missense	c.1558	p.E520Q	1.000	smart_Znf_TTF	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	54	0	0	44	22	33.33	-	-	-	C	149557807	G	C	149557807	3	2	623	1	0	0	0	0	1	0	0	0	18288	1291	45	2	1584	2	ZNF862	7	149557807	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	17670332	149557807	9580856	37	54123										
ADRA1A	0	genome.wustl.edu	37	chr8	26627933	26627933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aaggtctctcttgatcccacGgggatgcgcaccatgtcctt	10	13	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	26627933	26627933	G	A	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	silent	c.1134	p.P378	0.111	prints_Adrene_rcpt_A1Cs	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	109	0	0	134	36	21.18	-	-	-	A	26627933	G	A	26627933	2	1	623	1	0	0	0	0	0	0	0	1	334	1103	39	1		1	ADRA1A	8	26627933	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		26627933	119736089	38	54124										
PXDNL	0	genome.wustl.edu	37	chr8	52336142	52336142	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tatagacacctacccgtgacTgtaagaaacatgttggtcac	8	10	1	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	52336142	52336142	T	G	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	silent	c.1788	p.T596	0.012	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	111	0	0	217	61	21.94	-	-	-	G	52336142	T	G	52336142	2	3	623	1	0	0	0	0	0	0	0	1	12931	1567	55	5		5	PXDNL	8	52336142	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	25708209	52336142	94027880	39	54125										
CSPP1	0	genome.wustl.edu	37	chr8	68087581	68087581	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tgtacctggatcctccaagaGatcatcacaccttagagatt	7	11	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	68087581	68087581	G	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.3004	p.D1002H	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	113	0	0	131	23	14.94	-	-	-	C	68087581	G	C	68087581	3	2	623	1	0	0	0	0	1	0	0	0	3994	942	33	2	3211	2	CSPP1	8	68087581	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	15751439	68087581	78276441	40	54126										
ARFGEF1	0	genome.wustl.edu	37	chr8	68138335	68138335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	acttgtgtctgggaaagctgCattgcacgcaaattcagaca	10	9	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	68138335	68138335	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.4000	p.A1334T	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	103	0	0	141	63	30.73	-	-	-	T	68138335	C	T	68138335	3	4	623	1	0	0	0	0	1	0	0	0	854	710	25	4	1597	4	ARFGEF1	8	68138335	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	50754	68138335	78225687	41	54127										
NUDCD1	0	genome.wustl.edu	37	chr8	110308645	110308645	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agaagcgctatttccacgttCacctgttccaatgacataca	6	12	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	110308645	110308645	C	A	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	nonsense	c.427	p.E143*	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	234	0	0	401	82	16.91	-	-	-	A	110308645	C	A	110308645	4	1	623	1	0	0	0	0	0	1	0	0	10795	835	29	2	1356	2	NUDCD1	8	110308645	Nonsense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	42170310	110308645	36055377	42	54128										
ZFAT	0	genome.wustl.edu	37	chr8	135669982	135669982	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ataaagatggccgtgttttcTgtaaggaaaaaaaaggaaaa	10	3	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	135669982	135669982	T	C	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	splice_site	c.20-2	e2-2	1.000	-	-	-	no_errors	ZFAT	HGNC	ENSG00000066827	139	0	0	254	35	12.07	-	-	-	C	135669982	T	C	135669982	5	2	623	1	0	0	0	0	0	0	1	0	17728	1594	55	5	3773	5	ZFAT	8	135669982	Splice_Site	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	25361337	135669982	10694040	43	54129										
COL22A1	0	genome.wustl.edu	37	chr8	139767455	139767455	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctctgggtcctggagctcccTggtaacacaagccaaacaga	10	13	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	8	139767455	139767455	T	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	splice_site	c.1978-2	e20-2	0.983	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436	44	0	0	89	26	22.61	-	-	-	A	139767455	T	A	139767455	5	1	623	1	0	0	0	0	0	0	1	0	3711	1594	55	5	3084	5	COL22A1	8	139767455	Splice_Site	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	4097473	139767455	6596567	44	54130										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18906856	18906856	+	Frame_Shift_Del	DEL	T	T	-													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tgcctgagcacctgtgctccTgggggccccggcctgccaac							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	9	18906856	18906856	T	-	DEL	ADAMTSL1	ENST00000380545	human	ensembl	69_37n	1	putative	frame_shift_del	c.1231	p.W411fs	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	43	0	0	74	29	25.89	-	-	-	-	18906856	T	-	18906856	7	5	623	1	0	1	0	1	0	0	0	0	274	1580	55	0	5242	0	ADAMTSL1	9	18906856	Frame_Shift_Del	DEL	T	TCGA-C8-A12K-01A-21D-A10Y-09		18906856	122306575	45	54131										
IFNA2	0	genome.wustl.edu	37	chr9	21384882	21384882	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ttctctttcagatagagagtGattctttggaagtatttcct	8	6	3	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	9	21384882	21384882	G	C	SNP	IFNA2	ENST00000380206	human	ensembl	69_37n	-1	known	missense	c.447	p.I149M	0.007	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA2	HGNC	ENSG00000188379	324	0	0	360	46	11.3	-	-	-	C	21384882	G	C	21384882	3	2	623	1	0	0	0	0	1	0	0	0	7591	1280	45	2	123	2	IFNA2	9	21384882	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	2478026	21384882	119828549	46	54132										
PRUNE2	0	genome.wustl.edu	37	chr9	79324986	79324986	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tctggaacggcaagctttccTcatttttgtcttgaatatca	7	9	4	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	9	79324986	79324986	T	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1127	p.E376V	0.274	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	102	0	0	152	40	20.83	-	-	-	A	79324986	T	A	79324986	3	1	623	1	0	0	0	0	1	0	0	0	12721	1551	54	5	7110	5	PRUNE2	9	79324986	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	57940104	79324986	61888445	47	54133										
SPTLC1	0	genome.wustl.edu	37	chr9	94821572	94821572	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tgtaatcctttctgaatagcAaagcaggcagctctatctct	7	10	3	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	9	94821572	94821572	A	G	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	silent	c.579	p.F193	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	166	0	0	99	123	55.41	-	-	-	G	94821572	A	G	94821572	2	3	623	1	0	0	0	0	0	0	0	1	15214	127	5	5		5	SPTLC1	9	94821572	Silent	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	15496586	94821572	46391859	48	54134										
TUBB8	0	genome.wustl.edu	37	chr10	93603	93603	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aggtcagcattcagctggccCgggaagcgcaggcacgtggt	16	11	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	10	93603	93603	C	T	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	silent	c.729	p.P243	0.987	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	8	0	0	9	7	43.75	-	-	-	T	93603	C	T	93603	2	4	623	1	0	0	0	0	0	0	0	1	16858	639	23	1		1	TUBB8	10	93603	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		93603	135441144	49	54135										
MCM10	0	genome.wustl.edu	37	chr10	13237166	13237166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gggagccccggccacaatgaCgcccaagctggggcgaggtg	17	13	0	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	10	13237166	13237166	C	T	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	missense	c.1874	p.T625M	0.000	pfam_Rep_factor_Mcm10	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	72	0	0	143	45	23.94	-	-	-	T	13237166	C	T	13237166	3	4	623	1	0	0	0	0	1	0	0	0	9456	536	19	1	1924	1	MCM10	10	13237166	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	13143563	13237166	122297581	50	54136										
GPRIN2	0	genome.wustl.edu	37	chr10	46999151	46999151	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccagtgctggaggccactggTggagcagcactgtgggcaat	16	10	0	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	10	46999151	46999151	T	C	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.271	p.W91R	0.588	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	9	0	0	20	12	37.5	-	-	-	C	46999151	T	C	46999151	3	2	623	1	0	0	0	0	1	0	0	0	6781	1696	59	5	273	5	GPRIN2	10	46999151	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	33761985	46999151	88535596	51	54137										
DDX21	0	genome.wustl.edu	37	chr10	70737415	70737415	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tttcaggtgccacgtccgtaGaccagcgctccttgatcaac	9	14	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	10	70737415	70737415	G	A	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	1	known	missense	c.1873	p.D625N	0.972	pfam_GUCT	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	63	0	0	83	30	26.55	-	-	-	A	70737415	G	A	70737415	3	1	623	1	0	0	0	0	1	0	0	0	4380	942	33	2	1919	2	DDX21	10	70737415	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	23738264	70737415	64797332	52	54138										
OR51B6	0	genome.wustl.edu	37	chr11	5373049	5373049	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	caggcctattttatccatacTctttctgtcatggagtcagg	8	10	4	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	5373049	5373049	T	A	SNP	OR51B6	ENST00000380219	human	ensembl	69_37n	1	known	silent	c.312	p.T104	0.237	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239	124	0	0	172	42	19.63	-	-	-	A	5373049	T	A	5373049	2	1	623	1	0	0	0	0	0	0	0	1	11165	1538	54	5		5	OR51B6	11	5373049	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09		5373049	129633467	53	54139										
TRIM34	0	genome.wustl.edu	37	chr11	5624607	5624607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccctatctgcctggagctccTaacagaacccctgagcatag	8	15	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	5624607	5624607	T	A	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	missense	c.149	p.L50Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	126	0	0	160	47	22.6	-	-	-	A	5624607	T	A	5624607	3	1	623	1	0	0	0	0	1	0	0	0	16604	1522	53	5		5	TRIM34	11	5624607	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	251558	5624607	129381909	54	54140										
PIK3C2A	0	genome.wustl.edu	37	chr11	17121503	17121503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tacttgtaagttctggtaacCctgaaggaatcatctgtaga	9	7	3	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	17121503	17121503	C	T	SNP	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	missense	c.4022	p.G1341E	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	102	0	0	85	56	39.72	-	-	-	T	17121503	C	T	17121503	3	4	623	1	0	0	0	0	1	0	0	0	11983	623	22	4	1070	4	PIK3C2A	11	17121503	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	11496896	17121503	117885013	55	54141										
QSER1	0	genome.wustl.edu	37	chr11	32956801	32956801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctacaacacccacacctttaGtgtctgaaactggcggtaac	7	13	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	32956801	32956801	G	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.3610	p.V1204M	0.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	119	0	0	129	32	19.88	-	-	-	A	32956801	G	A	32956801	3	1	623	1	0	0	0	0	1	0	0	0	12965	1029	36	4	3616	4	QSER1	11	32956801	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	15835298	32956801	102049715	56	54142										
CSTF3	0	genome.wustl.edu	37	chr11	33108591	33108591	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agtgtctggtttagggtattCtggttttctatccacttcat	9	7	4	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	33108591	33108591	C	G	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.1738	p.E580Q	1.000	pfam_Suf	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	315	0	0	309	98	23.96	-	-	-	G	33108591	C	G	33108591	3	3	623	1	0	0	0	0	1	0	0	0	4018	922	32	2	431	2	CSTF3	11	33108591	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	151790	33108591	101897925	57	54143										
DDB1	0	genome.wustl.edu	37	chr11	61068381	61068382	+	Frame_Shift_Del	DEL	CG	CG	-													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctgtggctggttctgtcttcCgctcggtgtgaaaggatctc							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	61068381	61068382	CG	-	DEL	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	frame_shift_del	c.3239_3238	p.R1080fs	1.000:1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	252	0	0	278	89	23.92	-	-	-	-	61068382	CG	-	61068381	7	5	623	1	0	1	0	1	0	0	0	0	4354	652	23	0	191	0	DDB1	11	61068381	Frame_Shift_Del	DEL	CG	TCGA-C8-A12K-01A-21D-A10Y-09	27959790	61068381	73938135	58	54144										
TUT1	0	genome.wustl.edu	37	chr11	62348589	62348589	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ctcactcacctggggctcttCcaagtcacccagatccaaga	7	16	4	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	62348589	62348589	C	A	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	nonsense	c.793	p.E265*	1.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	55	0	0	125	46	26.9	-	-	-	A	62348589	C	A	62348589	4	1	623	1	0	0	0	0	0	1	0	0	16877	864	30	2	1969	2	TUT1	11	62348589	Nonsense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	1280208	62348589	72657927	59	54145										
STX5	0	genome.wustl.edu	37	chr11	62598707	62598707	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ttagacccgtagcgtttccgCgggatcattgagacgcataa	11	10	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	62598707	62598707	C	G	SNP	STX5	ENST00000294179	human	ensembl	69_37n	-1	known	silent	c.9	p.P3	1.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX5	HGNC	ENSG00000162236	15	0	0	38	13	25.49	-	-	-	G	62598707	C	G	62598707	2	3	623	1	0	0	0	0	0	0	0	1	15439	755	27	3		3	STX5	11	62598707	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	250118	62598707	72407809	60	54146										
EIF1AD	0	genome.wustl.edu	37	chr11	65767848	65767848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	caccacatgcttcctcttggTggcctgagacatgctgaagt	10	12	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	11	65767848	65767848	T	C	SNP	EIF1AD	ENST00000312234	human	ensembl	69_37n	-1	known	missense	c.13	p.T5A	1.000	superfamily_NA-bd_OB-fold-like,pfscan_RNA-binding_domain_S1_IF1	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1	-	no_errors	EIF1AD	HGNC	ENSG00000175376	112	0	0	261	82	23.91	-	-	-	C	65767848	T	C	65767848	3	2	623	1	0	0	0	0	1	0	0	0	5026	1696	59	5	504	5	EIF1AD	11	65767848	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	3169141	65767848	69238668	61	54147										
CACNA2D4	0	genome.wustl.edu	37	chr12	1920881	1920881	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gaattccagcttcatttggaCgcccgcggctacagggcaga	12	12	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	12	1920881	1920881	C	A	SNP	CACNA2D4	ENST00000382722	human	ensembl	69_37n	-1	known	missense	c.2560	p.V854F	0.990	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062	37	0	0	101	21	17.07	-	-	-	A	1920881	C	A	1920881	3	1	623	1	0	0	0	0	1	0	0	0	2576	536	19	3	901	3	CACNA2D4	12	1920881	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		1920881	131931014	62	54148										
TAS2R14	0	genome.wustl.edu	37	chr12	11091327	11091327	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gaactgcaagtcttgtttctTctgtatccattgatactggc	8	9	3	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	12	11091327	11091327	T	G	SNP	TAS2R14	ENST00000537503	human	ensembl	69_37n	-1	known	missense	c.480	p.R160S	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R14	HGNC	ENSG00000212127	135	1	0.74	88	34	27.87	-	-	-	G	11091327	T	G	11091327	3	3	623	1	0	0	0	0	1	0	0	0	15660	1780	62	5	476	5	TAS2R14	12	11091327	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	9170446	11091327	122760568	63	54149										
SMARCC2	0	genome.wustl.edu	37	chr12	56567506	56567506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tgtcttgggctgcagaggcaCcagccctgatggtgtgtcag	15	10	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	12	56567506	56567506	C	G	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.1624	p.V542L	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	74	0	0	107	59	35.54	-	-	-	G	56567506	C	G	56567506	3	3	623	1	0	0	0	0	1	0	0	0	14865	507	18	4	2165	4	SMARCC2	12	56567506	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	45476179	56567506	77284389	64	54150										
USP15	0	genome.wustl.edu	37	chr12	62775318	62775318	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gagtatttcctcaatgataaGtatcaagaagaactgaattt	7	5	2	4			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	12	62775318	62775318	G	C	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.963	p.K321N	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	235	0	0	235	82	25.87	-	-	-	C	62775318	G	C	62775318	3	2	623	1	0	0	0	0	1	0	0	0	17143	1020	36	4	906	4	USP15	12	62775318	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	6207812	62775318	71076577	65	54151										
FGD6	0	genome.wustl.edu	37	chr12	95603690	95603690	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tgcaagttaatttgagctgcTtaggcaggctcatagataca	10	7	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	12	95603690	95603690	T	A	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.1370	p.K457M	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	109	0	0	59	33	35.87	-	-	-	A	95603690	T	A	95603690	3	1	623	1	0	0	0	0	1	0	0	0	5883	1609	56	5	3002	5	FGD6	12	95603690	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	32828372	95603690	38248205	66	54152										
APBA2	0	genome.wustl.edu	37	chr15	29346952	29346952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agtcgctgaacctccttcccGaggccaagcaccccggagac	10	17	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	29346952	29346952	G	C	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.865	p.E289Q	0.991	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	12	0	0	13	8	38.1	-	-	-	C	29346952	G	C	29346952	3	2	623	1	0	0	0	0	1	0	0	0	758	1059	37	3	867	3	APBA2	15	29346952	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		29346952	73184440	67	54153										
DISP2	0	genome.wustl.edu	37	chr15	40661944	40661944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gttcccggcccccaccagccCctgcctccccaagggagctg	10	21	0	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	40661944	40661944	C	G	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	missense	c.3631	p.P1211A	0.082	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	16	0	0	29	8	21.62	-	-	-	G	40661944	C	G	40661944	3	3	623	1	0	0	0	0	1	0	0	0	4576	623	22	4	3661	4	DISP2	15	40661944	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	11314992	40661944	61869448	68	54154										
FAM96A	0	genome.wustl.edu	37	chr15	64367694	64367694	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tttcaacattcacttactgtCttcttctgttgagtgggttc	7	9	5	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	64367694	64367694	C	G	SNP	FAM96A	ENST00000300030	human	ensembl	69_37n	-1	known	missense	c.382	p.D128H	1.000	NULL	pfam_DUF59	-	no_errors	FAM96A	HGNC	ENSG00000166797	471	0	0	184	93	33.57	-	-	-	G	64367694	C	G	64367694	3	3	623	1	0	0	0	0	1	0	0	0	5700	913	32	2	108	2	FAM96A	15	64367694	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	23705750	64367694	38163698	69	54155										
STRA6	0	genome.wustl.edu	37	chr15	74472480	74472480	+	Missense_Mutation	SNP	G	G	A													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcggaagacctgcagggttgGgttgtgcagcagcgtgtagg							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	74472480	74472480	G	A	SNP	STRA6	ENST00000563965	human	ensembl	69_37n	-1	known	missense	c.2062	p.P688S	1.000	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868	24	0	0	57	22	27.5	-	-	-	A	74472480	G	A	74472480	3	1	623	1	0	0	0	0	1	0	0	0	15413	1232	43	4	62	4	STRA6	15	74472480	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	10104786	74472480	28058912	70	54156	430	2								
STRA6	0	genome.wustl.edu	37	chr15	74472481	74472481	+	Missense_Mutation	SNP	G	G	C													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	cggaagacctgcagggttggGttgtgcagcagcgtgtaggc							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	74472481	74472481	G	C	SNP	STRA6	ENST00000563965	human	ensembl	69_37n	-1	known	missense	c.2061	p.N687K	1.000	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868	23	0	0	56	22	28.21	-	-	-	C	74472481	G	C	74472481	3	2	623	1	0	0	0	0	1	0	0	0	15413	1252	44	4	63	4	STRA6	15	74472481	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1	74472481	28058911	71	54157	430	2								
FAM108C1	0	genome.wustl.edu	37	chr15	81046555	81046555	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	catggtacagaggatgaggtCatcgatttctcccatggcct	11	10	2	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	15	81046555	81046555	C	A	SNP	FAM108C1	ENST00000258884	human	ensembl	69_37n	1	known	silent	c.834	p.V278	1.000	pfam_Peptidase_S9,pfam_Dienelactn_hydro	pfam_Peptidase_S9,pfam_Dienelactn_hydro	-	no_errors	FAM108C1	HGNC	ENSG00000136379	92	0	0	140	47	25.13	-	-	-	A	81046555	C	A	81046555	2	1	623	1	0	0	0	0	0	0	0	1	5433	813	29	2		2	FAM108C1	15	81046555	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	6574074	81046555	21484837	72	54158										
MSLN	0	genome.wustl.edu	37	chr16	816661	816661	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aaggctcctcggcggcccctCccacaggtggccaccctgat	11	18	0	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	16	816661	816661	C	T	SNP	MSLN	ENST00000382862	human	ensembl	69_37n	1	known	silent	c.1248	p.L416	0.003	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854	29	0	0	46	7	13.21	-	-	-	T	816661	C	T	816661	2	4	623	1	0	0	0	0	0	0	0	1	9953	842	30	2		2	MSLN	16	816661	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		816661	89538092	73	54159										
MEFV	0	genome.wustl.edu	37	chr16	3297157	3297157	+	Frame_Shift_Del	DEL	G	G	-													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggcccacgtcctccagtgaGgccacaaagaaatgctcttg							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	16	3297157	3297157	G	-	DEL	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	frame_shift_del	c.1446	p.S483fs	1.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	69	0	0	161	58	25.55	-	-	-	-	3297157	G	-	3297157	7	5	623	1	0	1	0	1	0	0	0	0	9530	987	35	0	923	0	MEFV	16	3297157	Frame_Shift_Del	DEL	G	TCGA-C8-A12K-01A-21D-A10Y-09	2480496	3297157	87057596	74	54160										
SEC14L5	0	genome.wustl.edu	37	chr16	5038149	5038149	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tccccgccccttcccttgcaGatcgcaggtgttgagcacgt	10	16	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	16	5038149	5038149	G	T	SNP	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	splice_site	c.214-1	e3-1	1.000	-	-	-	no_errors	SEC14L5	HGNC	ENSG00000103184	15	0	0	79	25	24.04	-	-	-	T	5038149	G	T	5038149	5	4	623	1	0	0	0	0	0	0	1	0	14073	956	33	2	223	2	SEC14L5	16	5038149	Splice_Site	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1740992	5038149	85316604	75	54161										
ATXN2L	0	genome.wustl.edu	37	chr16	28842316	28842316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gtccccaaaggcacaacggcCtctgagaggtgccaagactc	11	14	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	16	28842316	28842316	C	T	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	missense	c.1244	p.P415L	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	98	0	0	76	29	27.62	-	-	-	T	28842316	C	T	28842316	3	4	623	1	0	0	0	0	1	0	0	0	1216	681	24	4	1282	4	ATXN2L	16	28842316	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	23804167	28842316	61512437	76	54162										
PSKH1	0	genome.wustl.edu	37	chr16	67942876	67942876	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggccacacggagcctccctCagaaccaccacgcagggcca	10	18	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	16	67942876	67942876	C	G	SNP	PSKH1	ENST00000291041	human	ensembl	69_37n	1	known	nonsense	c.224	p.S75*	0.892	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792	63	0	0	172	54	23.89	-	-	-	G	67942876	C	G	67942876	4	3	623	1	0	0	0	0	0	1	0	0	12744	838	29	2	226	2	PSKH1	16	67942876	Nonsense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	39100560	67942876	22411877	77	54163										
TP53	0	genome.wustl.edu	37	chr17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcaaatttccttccactcggAtaagatgctgaggaggggcc	12	10	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	7578265	7578265	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.584	p.I195T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	195	0	0	120	74	38.14	-	-	-	G	7578265	A	G	7578265	3	3	623	1	0	0	0	0	1	0	0	0	16477	333	12	5	710	5	TP53	17	7578265	Missense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09		7578265	73616945	78	54164										
FAM18B2	0	genome.wustl.edu	37	chr17	15450400	15450400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gattcaaacacccaatggctCtttccatcttcatcaatgtg	5	12	5	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	15450400	15450400	C	G	SNP	FAM18B2	ENST00000225576	human	ensembl	69_37n	-1	known	missense	c.303	p.K101N	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	FAM18B2	HGNC	ENSG00000175106	260	0	0	94	63	40.13	-	-	-	G	15450400	C	G	15450400	3	3	623	1	0	0	0	0	1	0	0	0	5562	912	32	2	693	2	FAM18B2	17	15450400	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	7872135	15450400	65744810	79	54165										
MYO18A	0	genome.wustl.edu	37	chr17	27424325	27424325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	agccgtttcttggtgaagtcCacctcccgcacagcccgctc	9	17	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	27424325	27424325	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	silent	c.4146	p.V1382	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	46	0	0	171	44	20.37	-	-	-	T	27424325	C	T	27424325	2	4	623	1	0	0	0	0	0	0	0	1	10137	581	21	4		4	MYO18A	17	27424325	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	11973925	27424325	53770885	80	54166										
PNPO	0	genome.wustl.edu	37	chr17	46023746	46023746	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	accaggatcaagaggtgcccAagccaaaatcctggtgagtg	12	10	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	46023746	46023746	A	T	SNP	PNPO	ENST00000225573	human	ensembl	69_37n	1	known	nonsense	c.604	p.K202*	0.998	superfamily_Split_barrel_FMN-bd-related,tigrfam_Pyridox_Oxase	pfam_Pyridox_Oxase_FMN-bd,pfam_Pyridoxamine_oxidase_dimer_C,superfamily_Split_barrel_FMN-bd-related,tigrfam_Pyridox_Oxase	-	no_errors	PNPO	HGNC	ENSG00000108439	84	0	0	68	64	48.48	-	-	-	T	46023746	A	T	46023746	4	4	623	1	0	0	0	0	0	1	0	0	12246	131	5	5	626	5	PNPO	17	46023746	Nonsense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	18599421	46023746	35171464	81	54167										
APPBP2	0	genome.wustl.edu	37	chr17	58531762	58531762	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcttttttagctagttggagTgaagacaggtgcaaatcatg	12	5	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	58531762	58531762	T	C	SNP	APPBP2	ENST00000083182	human	ensembl	69_37n	-1	known	silent	c.1239	p.S413	0.988	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	APPBP2	HGNC	ENSG00000062725	243	0	0	94	109	53.43	-	-	-	C	58531762	T	C	58531762	2	2	623	1	0	0	0	0	0	0	0	1	818	1683	59	5		5	APPBP2	17	58531762	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	12508016	58531762	22663448	82	54168										
RNF213	0	genome.wustl.edu	37	chr17	78306165	78306165	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tcattaagttgcaccaggatCtaaagtcaggagaggtcacc	10	9	4	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	17	78306165	78306165	C	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.3877	p.L1293	0.949	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	47	0	0	64	13	16.88	-	-	-	T	78306165	C	T	78306165	2	4	623	1	0	0	0	0	0	0	0	1	13563	912	32	2		2	RNF213	17	78306165	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	19774403	78306165	2889045	83	54169										
ARHGAP28	0	genome.wustl.edu	37	chr18	6868167	6868167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aggctatacttgagaccattCcagttctaccagttcattcc	6	12	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	18	6868167	6868167	C	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	missense	c.745	p.P249T	0.994	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	262	0	0	514	138	21.1	-	-	-	A	6868167	C	A	6868167	3	1	623	1	0	0	0	0	1	0	0	0	879	855	30	2	282	2	ARHGAP28	18	6868167	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		6868167	71209081	84	54170										
FHOD3	0	genome.wustl.edu	37	chr18	34298590	34298590	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccgacgctgcagagaattccTgtggtcaaaactggaaccca	10	12	1	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	18	34298590	34298590	T	G	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.2804	p.L935R	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	110	0	0	114	68	37.36	-	-	-	G	34298590	T	G	34298590	3	3	623	1	0	0	0	0	1	0	0	0	5929	1580	55	5	2866	5	FHOD3	18	34298590	Missense_Mutation	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	27430423	34298590	43778658	85	54171										
TCF4	0	genome.wustl.edu	37	chr18	52901809	52901809	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gtcctggggtgggttcaggtCaggggaagtcgcagactgga	19	7	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	18	52901809	52901809	C	A	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.1762	p.D588Y	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	104	0	0	233	43	15.52	-	-	-	A	52901809	C	A	52901809	3	1	623	1	0	0	0	0	1	0	0	0	15790	826	29	2	575	2	TCF4	18	52901809	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	18603219	52901809	25175439	86	54172										
ZFR2	0	genome.wustl.edu	37	chr19	3852528	3852528	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gggcacagggcagtcacagcGtcacttccactgcagccaac	11	15	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	3852528	3852528	G	C	SNP	ZFR2	ENST00000439086	human	ensembl	69_37n	-1	known	missense	c.138	p.D46E	0.009	NULL	NULL	-	no_errors	ZFR2	HGNC	ENSG00000105278	86	0	0	123	64	34.04	-	-	-	C	3852528	G	C	3852528	3	2	623	1	0	0	0	0	1	0	0	0	17756	1136	40	3	2917	3	ZFR2	19	3852528	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09		3852528	55276455	87	54173										
MBD3L1	0	genome.wustl.edu	37	chr19	8953926	8953926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gagagaccaagaaggccgtcCtgaaaaacgctaagaaaaaa	10	8	0	4			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	8953926	8953926	C	T	SNP	MBD3L1	ENST00000305625	human	ensembl	69_37n	1	known	missense	c.572	p.P191L	0.000	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948	23	0	0	25	18	40.91	-	-	-	T	8953926	C	T	8953926	3	4	623	1	0	0	0	0	1	0	0	0	9416	681	24	4	574	4	MBD3L1	19	8953926	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	5101398	8953926	50175057	88	54174										
ATG4D	0	genome.wustl.edu	37	chr19	10662976	10662976	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ggagacaggaaggagtttgaGacactctgctcagagctgac	14	8	2	4			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	10662976	10662976	G	C	SNP	ATG4D	ENST00000309469	human	ensembl	69_37n	1	known	missense	c.1218	p.E406D	0.999	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734	35	0	0	119	28	19.05	-	-	-	C	10662976	G	C	10662976	3	2	623	1	0	0	0	0	1	0	0	0	1103	933	33	2	1252	2	ATG4D	19	10662976	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	1709050	10662976	48466007	89	54175										
EMR2	0	genome.wustl.edu	37	chr19	14884859	14884859	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gagtcctgagggcaccaccgGgcacagcctgcaagagcagg	15	13	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	14884859	14884859	G	A	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	silent	c.90	p.A30	0.000	smart_EGF-like,prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	106	0	0	318	95	22.89	-	-	-	A	14884859	G	A	14884859	2	1	623	1	0	0	0	0	0	0	0	1	5142	1219	43	4		4	EMR2	19	14884859	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	4221883	14884859	44244124	90	54176										
LRFN1	0	genome.wustl.edu	37	chr19	39805332	39805333	+	Frame_Shift_Del	DEL	CA	CA	-													0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aggcggttggaggtcatgtcCagacggaccagcttgtgaag							TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	39805332	39805333	CA	-	DEL	LRFN1	ENST00000248668	human	ensembl	69_37n	-1	known	frame_shift_del	c.645_644	p.L215fs	1.000:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN1	HGNC	ENSG00000128011	23	0	0	77	24	22.64	-	-	-	-	39805333	CA	-	39805332	7	5	623	1	0	1	0	1	0	0	0	0	9003	581	21	0	1678	0	LRFN1	19	39805332	Frame_Shift_Del	DEL	CA	TCGA-C8-A12K-01A-21D-A10Y-09	24920473	39805332	19323651	91	54177										
ZIK1	0	genome.wustl.edu	37	chr19	58102405	58102405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggagaaaggccttataagtGtggtgactgtgggaaatcct	14	5	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	19	58102405	58102405	G	T	SNP	ZIK1	ENST00000307468	human	ensembl	69_37n	1	known	missense	c.1226	p.C409F	0.970	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649	149	0	0	115	29	20.14	-	-	-	T	58102405	G	T	58102405	3	4	623	1	0	0	0	0	1	0	0	0	17779	1377	48	4	1240	4	ZIK1	19	58102405	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	18297073	58102405	1026578	92	54178										
ELMO2	0	genome.wustl.edu	37	chr20	45021783	45021783	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ttcttaatgtcactgcgagtCtgggtagtgaaaaataaaca	9	6	3	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	20	45021783	45021783	C	A	SNP	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	splice_site	c.193-1	e4-1	1.000	-	-	-	no_errors	ELMO2	HGNC	ENSG00000062598	193	0	0	93	26	21.85	-	-	-	A	45021783	C	A	45021783	5	1	623	1	0	0	0	0	0	0	1	0	5103	927	32	2	2038	2	ELMO2	20	45021783	Splice_Site	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		45021783	18003737	93	54179										
ZNF74	0	genome.wustl.edu	37	chr22	20760374	20760374	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gctcgctgctcagcatgcacCtgcgggtgcacaccggcgag	14	15	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	22	20760374	20760374	C	G	SNP	ZNF74	ENST00000356671	human	ensembl	69_37n	1	known	missense	c.1051	p.L351V	0.088	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252	21	0	0	113	52	31.52	-	-	-	G	20760374	C	G	20760374	3	3	623	1	0	0	0	0	1	0	0	0	18221	680	24	4	1069	4	ZNF74	22	20760374	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		20760374	30544192	94	54180										
SMTN	0	genome.wustl.edu	37	chr22	31486977	31486977	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccttgccagcggaccttcctCattccagcgggctggctctg	11	16	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	22	31486977	31486977	C	A	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	nonsense	c.968	p.S323*	0.124	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	124	0	0	292	117	28.61	-	-	-	A	31486977	C	A	31486977	4	1	623	1	0	0	0	0	0	1	0	0	14903	838	29	2	1002	2	SMTN	22	31486977	Nonsense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	10726603	31486977	19817589	95	54181										
ATXN3L	0	genome.wustl.edu	37	chrX	13337695	13337695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	caaattttctaatagtaaacCagtgttgtttataattacat	4	5	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	13337695	13337695	C	A	SNP	ATXN3L	ENST00000380622	human	ensembl	69_37n	-1	known	missense	c.359	p.W120L	1.000	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3L	HGNC	ENSG00000123594	95	0	0	37	18	32.73	-	-	-	A	13337695	C	A	13337695	3	1	623	1	0	0	0	0	1	0	0	0	1218	595	21	4	712	4	ATXN3L	23	13337695	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09		13337695	141932865	96	54182										
POLA1	0	genome.wustl.edu	37	chrX	24760174	24760174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	cgagttcttgttgcttcatgCattttacgaaaacaactata	6	8	2	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	24760174	24760174	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.2402	p.A801V	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	106	0	0	118	43	26.71	-	-	-	T	24760174	C	T	24760174	3	4	623	1	0	0	0	0	1	0	0	0	12261	710	25	4	2470	4	POLA1	23	24760174	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	11422479	24760174	130510386	97	54183										
FOXO4	0	genome.wustl.edu	37	chrX	70316804	70316804	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	ccctacttcaaggacaagggTgacagcaacagctcagcagg	11	12	2	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	70316804	70316804	T	A	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	silent	c.426	p.G142	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	74	0	0	96	39	28.06	-	-	-	A	70316804	T	A	70316804	2	1	623	1	0	0	0	0	0	0	0	1	6073	1683	59	5		5	FOXO4	23	70316804	Silent	SNP	T	TCGA-C8-A12K-01A-21D-A10Y-09	45556630	70316804	84953756	98	54184										
MED12	0	genome.wustl.edu	37	chrX	70352290	70352290	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gctaaactgcccacctcagtCcagggacatgtgttaaaggc	10	12	1	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	70352290	70352290	C	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	silent	c.4317	p.V1439	0.995	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	163	0	0	226	45	16.61	-	-	-	G	70352290	C	G	70352290	2	3	623	1	0	0	0	0	0	0	0	1	9499	842	30	2		2	MED12	23	70352290	Silent	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	35486	70352290	84918270	99	54185										
NXF5	0	genome.wustl.edu	37	chrX	101091722	101091722	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	taacctggaattgcggccagAggtagtgatgaaggtccaca	13	8	0	3			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	101091722	101091722	A	G	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	silent	c.1164	p.P388	0.001	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	217	0	0	454	133	22.5	-	-	-	G	101091722	A	G	101091722	2	3	623	1	0	0	0	0	0	0	0	1	10859	319	11	5		5	NXF5	23	101091722	Silent	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	30739432	101091722	54178838	100	54186										
DCAF12L1	0	genome.wustl.edu	37	chrX	125686220	125686220	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gcgatgtggcctgactccacGtccaccacgaaaagcgtgtt	11	13	0	1			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	125686220	125686220	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	69_37n	-1	known	silent	c.372	p.D124	0.996	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	49	0	0	184	43	18.94	-	-	-	A	125686220	G	A	125686220	2	1	623	1	0	0	0	0	0	0	0	1	4296	1136	40	1		1	DCAF12L1	23	125686220	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	24594498	125686220	29584340	101	54187										
BCORL1	0	genome.wustl.edu	37	chrX	129148107	129148107	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	cagccgctggtatatatcccGcctccaagctgtgggcagcc	11	15	0	0			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	129148107	129148107	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	silent	c.1359	p.P453	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	30	0	0	39	9	18.37	-	-	-	A	129148107	G	A	129148107	2	1	623	1	0	0	0	0	0	0	0	1	1391	1074	38	1		1	BCORL1	23	129148107	Silent	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	3461887	129148107	26122453	102	54188										
ZNF449	0	genome.wustl.edu	37	chrX	134493837	134493837	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	gatatccattaccaaaacttGacatgaacttctcattggag	6	9	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	134493837	134493837	G	T	SNP	ZNF449	ENST00000339249	human	ensembl	69_37n	1	known	missense	c.580	p.D194Y	0.804	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF449	HGNC	ENSG00000173275	225	0	0	206	54	20.77	-	-	-	T	134493837	G	T	134493837	3	4	623	1	0	0	0	0	1	0	0	0	18016	1290	45	2	590	2	ZNF449	23	134493837	Missense_Mutation	SNP	G	TCGA-C8-A12K-01A-21D-A10Y-09	5345730	134493837	20776723	103	54189										
FMR1	0	genome.wustl.edu	37	chrX	147014261	147014261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	aatttgctgaagatgtaataCaagttccaaggaacttagta	8	5	0	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	147014261	147014261	C	G	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.859	p.Q287E	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	150	0	0	107	32	23.02	-	-	-	G	147014261	C	G	147014261	3	3	623	1	0	0	0	0	1	0	0	0	6006	479	17	4	893	4	FMR1	23	147014261	Missense_Mutation	SNP	C	TCGA-C8-A12K-01A-21D-A10Y-09	12520424	147014261	8256299	104	54190										
ATP2B3	0	genome.wustl.edu	37	chrX	152827699	152827699	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192307692307692	20	0.000563955500229819	2.50211736237145	3.8032183908046	1.05644955300128	0.00177795271829769	0.0414008990117891	12	tggggagctggtctggggacAggtgagtgacagccctgccc	18	10	1	2			TCGA-C8-A12K-01A-21D-A10Y-09	TCGA-C8-A12K-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bcf92c27-3aa7-4449-9c7a-fc715789788f	5516f85d-911f-451a-b9b2-3bf9b4e5d74b	X	152827699	152827699	A	T	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.3158	p.Q1053L	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	84	0	0	177	68	27.64	-	-	-	T	152827699	A	T	152827699	3	4	623	1	0	0	0	0	1	0	0	0	1145	202	7	5	3228	5	ATP2B3	23	152827699	Missense_Mutation	SNP	A	TCGA-C8-A12K-01A-21D-A10Y-09	5813438	152827699	2442861	105	54191										
AJAP1	0	genome.wustl.edu	37	chr1	4832546	4832546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	caccgatgagacgctgcactCgacgacgggggagtacaaat	13	11	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	4832546	4832546	C	T	SNP	AJAP1	ENST00000378190	human	ensembl	69_37n	1	known	missense	c.1124	p.S375L	0.903	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	37	0	0	19	18	48.65	-	-	-	T	4832546	C	T	4832546	3	4	624	1	0	0	0	0	1	0	0	0	438	893	31	1	1138	1	AJAP1	1	4832546	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		4832546	244418075	1	54192										
CLCNKA	0	genome.wustl.edu	37	chr1	16351326	16351326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atctttcctggactgtgtacCctgtggccctcgtctctttc	8	14	2	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	16351326	16351326	C	T	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	missense	c.298	p.P100S	1.000	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	170	0	0	97	92	48.42	-	-	-	T	16351326	C	T	16351326	3	4	624	1	0	0	0	0	1	0	0	0	3499	623	22	4	308	4	CLCNKA	1	16351326	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	11518780	16351326	232899295	2	54193										
PLA2G2D	0	genome.wustl.edu	37	chr1	20442903	20442903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ggccagtaggagaggatgggCattttcccagtcacttgctt	13	9	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	20442903	20442903	C	T	SNP	PLA2G2D	ENST00000375105	human	ensembl	69_37n	-1	known	missense	c.108	p.M36I	0.000	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G2D	HGNC	ENSG00000117215	127	0	0	65	70	50.72	-	-	-	T	20442903	C	T	20442903	3	4	624	1	0	0	0	0	1	0	0	0	12071	710	25	4	341	4	PLA2G2D	1	20442903	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	4091577	20442903	228807718	3	54194										
ABCA4	0	genome.wustl.edu	37	chr1	94528272	94528272	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gccccagatgtaccggaaatCttccacgggatcagctctgg	11	13	3	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	94528272	94528272	C	G	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.1798	p.D600H	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	86	0	0	86	167	65.49	-	-	-	G	94528272	C	G	94528272	3	3	624	1	0	0	0	0	1	0	0	0	34	913	32	2	5175	2	ABCA4	1	94528272	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	74085369	94528272	154722349	4	54195										
PDE4DIP	0	genome.wustl.edu	37	chr1	144930847	144930847	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	catgctaagagctaattccaGcttgtgattacacccatgct	7	11	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	144930847	144930847	G	C	SNP	PDE4DIP	ENST00000313431	human	ensembl	69_37n	-1	known	missense	c.862	p.L288V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	98	0	0	201	36	15.19	-	-	-	C	144930847	G	C	144930847	3	2	624	1	0	0	0	0	1	0	0	0	11716	962	34	4	6837	4	PDE4DIP	1	144930847	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	50402575	144930847	104319774	5	54196										
SETDB1	0	genome.wustl.edu	37	chr1	150923915	150923915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aggccaaatcaaccctaactCtggctaccagtacaagagac	7	13	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	150923915	150923915	C	G	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.2288	p.S763C	1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	131	0	0	177	59	25	-	-	-	G	150923915	C	G	150923915	3	3	624	1	0	0	0	0	1	0	0	0	14226	913	32	2	2338	2	SETDB1	1	150923915	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	5993068	150923915	98326706	6	54197										
SPTA1	0	genome.wustl.edu	37	chr1	158582648	158582648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aatatatgacttgccctctgCcagggcttggaaggcattct	10	10	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	158582648	158582648	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.7093	p.A2365T	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	225	0	0	180	60	25	-	-	-	T	158582648	C	T	158582648	3	4	624	1	0	0	0	0	1	0	0	0	15207	739	26	4	174	4	SPTA1	1	158582648	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	7658733	158582648	90667973	7	54198										
PYHIN1	0	genome.wustl.edu	37	chr1	158943528	158943528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tcctctttcttctgacacttCcaccaaccgccatccagcag	4	18	3	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	158943528	158943528	C	A	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.1451	p.S484Y	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	345	0	0	237	119	33.33	-	-	-	A	158943528	C	A	158943528	3	1	624	1	0	0	0	0	1	0	0	0	12948	855	30	2	1477	2	PYHIN1	1	158943528	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	360880	158943528	90307093	8	54199										
COPA	0	genome.wustl.edu	37	chr1	160280016	160280016	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctgcattttctgctggattgTatgacatattgaatactgga	9	6	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	160280016	160280016	T	A	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.1109	p.Y370F	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	404	0	0	207	64	23.62	-	-	-	A	160280016	T	A	160280016	3	1	624	1	0	0	0	0	1	0	0	0	3757	1638	57	5	2680	5	COPA	1	160280016	Missense_Mutation	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09	1336488	160280016	88970605	9	54200										
VANGL2	0	genome.wustl.edu	37	chr1	160389022	160389022	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cgggaggagctggagccttgCgggacggcctgcgagggcct	20	11	0	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	160389022	160389022	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	silent	c.423	p.C141	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	15	0	0	69	31	31	-	-	-	T	160389022	C	T	160389022	2	4	624	1	0	0	0	0	0	0	0	1	17217	776	27	1		1	VANGL2	1	160389022	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	109006	160389022	88861599	10	54201										
SEC16B	0	genome.wustl.edu	37	chr1	177930700	177930700	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tccacatcagattcaatcaaCtcttctgatcattttagaac	3	11	6	3			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	177930700	177930700	C	T	SNP	SEC16B	ENST00000464428	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC16B	HGNC	ENSG00000254154	29	0	0	42	8	16	-	-	-	T	177930700	C	T	177930700	1	4	624	0	1	0	0	0	0	0	0	0	14075	580	20	4		4	SEC16B	1	177930700	RNA	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	17541678	177930700	71319921	11	54202										
CRB1	0	genome.wustl.edu	37	chr1	197396665	197396665	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tgagagctatggagacaccaTcagcctctccatgtttgtcc	9	12	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	197396665	197396665	T	A	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.2210	p.I737N	0.014	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	163	0	0	45	129	73.3	-	-	-	A	197396665	T	A	197396665	3	1	624	1	0	0	0	0	1	0	0	0	3878	1435	50	5	2236	5	CRB1	1	197396665	Missense_Mutation	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09	19465965	197396665	51853956	12	54203										
OBSCN	0	genome.wustl.edu	37	chr1	228402602	228402602	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ccatggggaacgccctgtcaCtatcgacggctacctggtag	12	13	1	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	1	228402602	228402602	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.1631	p.T544S	0.968	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	45	0	0	135	28	17.07	-	-	-	G	228402602	C	G	228402602	3	3	624	1	0	0	0	0	1	0	0	0	10885	565	20	4	1645	4	OBSCN	1	228402602	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	31005937	228402602	20848019	13	54204										
C2orf16	0	genome.wustl.edu	37	chr2	27800838	27800838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctccagggacaaccccaggaCcactgggtcgaattgtagaa	11	12	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	2	27800838	27800838	C	T	SNP	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	missense	c.1399	p.P467S	0.036	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	98	0	0	28	37	56.92	-	-	-	T	27800838	C	T	27800838	3	4	624	1	0	0	0	0	1	0	0	0	2177	507	18	4	1401	4	C2orf16	2	27800838	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		27800838	215398535	14	54205										
XPO1	0	genome.wustl.edu	37	chr2	61720102	61720102	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atggaatctgtatccttcatGaattctctcacaacttctcc	4	12	5	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	2	61720102	61720102	G	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1332	p.F444L	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	568	0	0	187	46	19.74	-	-	-	T	61720102	G	T	61720102	3	4	624	1	0	0	0	0	1	0	0	0	17542	1281	45	2	1935	2	XPO1	2	61720102	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	33919264	61720102	181479271	15	54206										
RARB	0	genome.wustl.edu	37	chr3	25622057	25622057	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aattccagtgctgaccatcgAgtccgactggacctgggcct	11	13	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	3	25622057	25622057	A	T	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	silent	c.651	p.R217	0.421	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	128	0	0	73	29	28.43	-	-	-	T	25622057	A	T	25622057	2	4	624	1	0	0	0	0	0	0	0	1	13136	291	11	5		5	RARB	3	25622057	Silent	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09		25622057	172400373	16	54207										
IL17RB	0	genome.wustl.edu	37	chr3	53899288	53899288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atgtcaagcagcaggtgtcaGcaggaaaaagatcacaagcc	11	9	3	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	3	53899288	53899288	G	A	SNP	IL17RB	ENST00000288167	human	ensembl	69_37n	1	known	missense	c.1462	p.A488T	0.000	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736	49	0	0	24	27	52.94	-	-	-	A	53899288	G	A	53899288	3	1	624	1	0	0	0	0	1	0	0	0	7694	971	34	4	1504	4	IL17RB	3	53899288	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	28277231	53899288	144123142	17	54208										
FLNB	0	genome.wustl.edu	37	chr3	58156382	58156382	+	Frame_Shift_Del	DEL	C	C	-													0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tgaagcatgtaggcaaccagCaatacaacgtcacatacgtc							TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	3	58156382	58156382	C	-	DEL	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	frame_shift_del	c.7702	p.Q2568fs	0.997	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	112	0	0	54	59	49.17	-	-	-	-	58156382	C	-	58156382	7	5	624	1	0	1	0	1	0	0	0	0	5980	711	25	0	7981	0	FLNB	3	58156382	Frame_Shift_Del	DEL	C	TCGA-C8-A12L-01A-11D-A10Y-09	4257094	58156382	139866048	18	54209										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	191	0	0	43	177	80.45	-	-	-	G	178952085	A	G	178952085	3	3	624	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09	120795703	178952085	19070345	19	54210										
CCDC39	0	genome.wustl.edu	37	chr3	180366114	180366114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctgagctttcttaaacagcaCaccttttatgaggttcagtt	7	9	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	3	180366114	180366114	C	T	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	missense	c.1201	p.V401M	0.618	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	466	0	0	202	25	11.01	-	-	-	T	180366114	C	T	180366114	3	4	624	1	0	0	0	0	1	0	0	0	2837	478	17	4	1668	4	CCDC39	3	180366114	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	1414029	180366114	17656316	20	54211										
PDHA2	0	genome.wustl.edu	37	chr4	96762083	96762083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aatggatgttctgtgtgttcGtgaggcaacaaaatttgcag	12	5	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	4	96762083	96762083	G	A	SNP	PDHA2	ENST00000295266	human	ensembl	69_37n	1	known	missense	c.782	p.R261H	0.696	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114	437	0	0	199	64	24.33	-	-	-	A	96762083	G	A	96762083	3	1	624	1	0	0	0	0	1	0	0	0	11738	1145	40	1	784	1	PDHA2	4	96762083	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		96762083	94392193	21	54212										
IL7R	0	genome.wustl.edu	37	chr5	35871268	35871268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	agaagtatgtaaaagttttaAtgcacgatgtagcttaccgc	9	6	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	5	35871268	35871268	A	G	SNP	IL7R	ENST00000303115	human	ensembl	69_37n	1	known	missense	c.490	p.M164V	0.069	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685	222	0	0	45	44	49.44	-	-	-	G	35871268	A	G	35871268	3	3	624	1	0	0	0	0	1	0	0	0	7759	101	4	5	504	5	IL7R	5	35871268	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09		35871268	145043992	22	54213										
FBXL17	0	genome.wustl.edu	37	chr5	107559823	107559823	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aagcagccatagtacctaccTtggttaggtgaatgactcct	9	10	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	5	107559823	107559823	T	A	SNP	FBXL17	ENST00000542267	human	ensembl	69_37n	-1	known	missense	c.1613	p.K538M	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL17	HGNC	ENSG00000145743	227	0	0	38	46	54.76	-	-	-	A	107559823	T	A	107559823	3	1	624	1	0	0	0	0	1	0	0	0	5759	1623	56	5	512	5	FBXL17	5	107559823	Missense_Mutation	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09	71688555	107559823	73355437	23	54214										
HIST1H3D	0	genome.wustl.edu	37	chr6	26197245	26197245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aaacgcagatcagtcttgaaGtcctgcgcgatctcacggac	10	12	3	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	6	26197245	26197245	G	T	SNP	HIST1H3D	ENST00000356476	human	ensembl	69_37n	-1	known	missense	c.234	p.D78E	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3D	HGNC	ENSG00000197409	53	0	0	46	70	60.34	-	-	-	T	26197245	G	T	26197245	3	4	624	1	0	0	0	0	1	0	0	0	7209	1020	36	4	180	4	HIST1H3D	6	26197245	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		26197245	144917822	24	54215										
C4A	0	genome.wustl.edu	37	chr6	31965519	31965519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gatcaatgtgaaggtgggagGaaacagcaaaggaaccctga	14	6	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	6	31965519	31965519	G	T	SNP	C4A	ENST00000428956	human	ensembl	69_37n	1	known	missense	c.4115	p.G1372V	0.999	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A2M_N,pfam_Netrin_module_non-TIMP,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C4A	HGNC	ENSG00000244731	284	0	0	304	62	16.94	-	-	-	T	31965519	G	T	31965519	3	4	624	1	0	0	0	0	1	0	0	0	2268	1174	41	2	3900	2	C4A	6	31965519	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	5768274	31965519	139149548	25	54216										
C4B	0	genome.wustl.edu	37	chr6	31998256	31998256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gatcaatgtgaaggtgggagGaaacagcaaaggaaccctga	14	6	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	6	31998256	31998256	G	T	SNP	C4B	ENST00000435363	human	ensembl	69_37n	1	known	missense	c.4115	p.G1372V	0.998	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C4B	HGNC	ENSG00000224389	81	0	0	53	10	15.87	-	-	-	T	31998256	G	T	31998256	3	4	624	1	0	0	0	0	1	0	0	0	2269	1174	41	2	8962	2	C4B	6	31998256	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	32737	31998256	139116811	26	54217										
EYS	0	genome.wustl.edu	37	chr6	64498094	64498094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctgactgaagacattgagacCaaccagtcttcctggggcga	11	11	1	4			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	6	64498094	64498094	C	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.7627	p.G2543C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	396	1	0.25	126	61	32.62	-	-	-	A	64498094	C	A	64498094	3	1	624	1	0	0	0	0	1	0	0	0	5369	594	21	4	1827	4	EYS	6	64498094	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	32499838	64498094	106616973	27	54218										
GPR141	0	genome.wustl.edu	37	chr7	37780680	37780680	+	Frame_Shift_Del	DEL	T	T	-													0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gggctcagctgaaaaacctaTtttttataggggtcatcctt							TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	7	37780680	37780680	T	-	DEL	GPR141	ENST00000334425	human	ensembl	69_37n	1	known	frame_shift_del	c.685	p.F230fs	0.054	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR141	HGNC	ENSG00000187037	496	0	0	206	101	32.79	-	-	-	-	37780680	T	-	37780680	7	5	624	1	0	1	0	1	0	0	0	0	6699	1493	52	0	687	0	GPR141	7	37780680	Frame_Shift_Del	DEL	T	TCGA-C8-A12L-01A-11D-A10Y-09		37780680	121357983	28	54219										
GCK	0	genome.wustl.edu	37	chr7	44192974	44192974	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cttcatgggtctccagcctcAggccgcggtccatctccttc	9	17	4	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	7	44192974	44192974	A	T	SNP	GCK	ENST00000345378	human	ensembl	69_37n	-1	known	missense	c.137	p.L46Q	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633	87	0	0	147	68	31.34	-	-	-	T	44192974	A	T	44192974	3	4	624	1	0	0	0	0	1	0	0	0	6343	188	7	5	1299	5	GCK	7	44192974	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09	6412294	44192974	114945689	29	54220										
TSPAN12	0	genome.wustl.edu	37	chr7	120496813	120496813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	acttcacggaatcttctctgGccattgtgagccccgtaagg	10	12	3	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	7	120496813	120496813	G	A	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	missense	c.5	p.A2V	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	81	0	0	44	42	48.84	-	-	-	A	120496813	G	A	120496813	3	1	624	1	0	0	0	0	1	0	0	0	16732	1203	42	4	940	4	TSPAN12	7	120496813	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	76303839	120496813	38641850	30	54221										
MGAM	0	genome.wustl.edu	37	chr7	141752213	141752213	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gatgagaatggtgcttctgcCgaaaactgcactgcccgtgg	13	10	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	7	141752213	141752213	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.2925	p.A975	0.094	pfam_P_trefoil,smart_P_trefoil	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	165	0	0	100	52	34.21	-	-	-	T	141752213	C	T	141752213	2	4	624	1	0	0	0	0	0	0	0	1	9612	639	23	1		1	MGAM	7	141752213	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	21255400	141752213	17386450	31	54222										
MGAM	0	genome.wustl.edu	37	chr7	141783171	141783171	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gttctggacttttatgtgttCttggggccaactccagagct	11	9	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	7	141783171	141783171	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.6342	p.F2114	0.982	pfam_Glyco_hydro_31,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	194	0	0	88	58	39.73	-	-	-	T	141783171	C	T	141783171	2	4	624	1	0	0	0	0	0	0	0	1	9612	928	32	2		2	MGAM	7	141783171	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	30958	141783171	17355492	32	54223										
C8orf44	0	genome.wustl.edu	37	chr8	67592086	67592086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctccaagagaccagatgtacCgagtttgaaatcccagaagc	9	11	0	4			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	8	67592086	67592086	C	T	SNP	C8orf44	ENST00000390159	human	ensembl	69_37n	1	known	missense	c.377	p.P126L	0.000	NULL	NULL	-	no_errors	C8orf44	HGNC	ENSG00000213865	216	0	0	47	40	45.98	-	-	-	T	67592086	C	T	67592086	3	4	624	1	0	0	0	0	1	0	0	0	2453	652	23	1	383	1	C8orf44	8	67592086	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		67592086	78771936	33	54224										
CDH17	0	genome.wustl.edu	37	chr8	95182679	95182679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tactggtgacggacatgtagGtggattatcattaatatctt	10	5	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	8	95182679	95182679	G	T	SNP	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	missense	c.1012	p.P338T	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	215	1	0.46	128	32	20	-	-	-	T	95182679	G	T	95182679	3	4	624	1	0	0	0	0	1	0	0	0	3131	1261	44	4	1526	4	CDH17	8	95182679	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	27590593	95182679	51181343	34	54225										
ESRP1	0	genome.wustl.edu	37	chr8	95658491	95658491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cctgatattgacaaactggaCgttgccacaatgacagagtg	10	9	0	4			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	8	95658491	95658491	C	T	SNP	ESRP1	ENST00000519505	human	ensembl	69_37n	1	putative	missense	c.67	p.R23C	0.998	NULL	smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ESRP1	HGNC	ENSG00000104413	371	0	0	136	28	17.07	-	-	-	T	95658491	C	T	95658491	3	4	624	1	0	0	0	0	1	0	0	0	5295	535	19	1	485	1	ESRP1	8	95658491	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	475812	95658491	50705531	35	54226										
TAF1L	0	genome.wustl.edu	37	chr9	32634816	32634817	+	Frame_Shift_Ins	INS	-	-	A													0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	agcgtaacacttttccaggtINScgaaattctggaaaaagttc							TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	9	32634816	32634817	-	A	INS	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	frame_shift_ins	c.762_761	p.P255fs	0.999:1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	244	0	0	119	106	47.11	-	-	-	A	32634817	-	A	32634816	7	5	624	1	0	1	1	0	0	0	0	0	15615	1654	58	0	4722	0	TAF1L	9	32634816	Frame_Shift_Ins	INS	-	TCGA-C8-A12L-01A-11D-A10Y-09		32634816	108578615	36	54227										
PDCD11	0	genome.wustl.edu	37	chr10	105173788	105173788	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ttcaagccagggaacactcaCaagtgtagaattattgacta	8	8	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	10	105173788	105173788	C	G	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.1251	p.H417Q	1.000	superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	181	0	0	37	79	68.1	-	-	-	G	105173788	C	G	105173788	3	3	624	1	0	0	0	0	1	0	0	0	11690	477	17	4	1285	4	PDCD11	10	105173788	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		105173788	30360959	37	54228										
OR2AG2	0	genome.wustl.edu	37	chr11	6790159	6790159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atccccaccaagatgaagccGcttcccaaggtggagttccg	10	14	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	11	6790159	6790159	G	A	SNP	OR2AG2	ENST00000338569	human	ensembl	69_37n	-1	novel	silent	c.30	p.S10	0.079	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124	237	1	0.42	104	39	27.08	-	-	-	A	6790159	G	A	6790159	2	1	624	1	0	0	0	0	0	0	0	1	11058	1078	38	1		1	OR2AG2	11	6790159	Silent	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		6790159	128216357	38	54229										
C11orf31	0	genome.wustl.edu	37	chr11	57509076	57509076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gctctaggcgccatggctccCcgcgggaggaagcgtaaggc	16	13	1	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	11	57509076	57509076	C	T	SNP	C11orf31	ENST00000388857	human	ensembl	69_37n	1	known	silent	c.9	p.P3	0.278	NULL	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	pseudogene	C11orf31	HGNC	ENSG00000211450	18	0	0	43	16	27.12	-	-	-	T	57509076	C	T	57509076	2	4	624	1	0	0	0	0	0	0	0	1	1648	610	22	4		4	C11orf31	11	57509076	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	50718917	57509076	77497440	39	54230										
ODZ4	0	genome.wustl.edu	37	chr11	78369780	78369780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctggcagctggtgattgtggAgccatagagctggtcaaacc	14	9	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	11	78369780	78369780	A	G	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.7633	p.S2545P	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	73	0	0	94	14	12.96	-	-	-	G	78369780	A	G	78369780	3	3	624	1	0	0	0	0	1	0	0	0	10910	304	11	5	680	5	ODZ4	11	78369780	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09	20860704	78369780	56636736	40	54231										
WNT5B	0	genome.wustl.edu	37	chr12	1755250	1755250	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ggcacgcagggccgcctctgCaacaagacctcggagggcat	14	14	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	12	1755250	1755250	C	G	SNP	WNT5B	ENST00000310594	human	ensembl	69_37n	1	known	missense	c.912	p.C304W	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	14	0	0	32	32	50	-	-	-	G	1755250	C	G	1755250	3	3	624	1	0	0	0	0	1	0	0	0	17489	718	25	4	926	4	WNT5B	12	1755250	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		1755250	132096645	41	54232										
TENC1	0	genome.wustl.edu	37	chr12	53453704	53453704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctgcctgaagccacccaaggCaggcgaggaagggcacgagg	16	12	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	12	53453704	53453704	C	T	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	missense	c.2309	p.A770V	0.629	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	8	0	0	13	4	23.53	-	-	-	T	53453704	C	T	53453704	3	4	624	1	0	0	0	0	1	0	0	0	15853	710	25	4	2458	4	TENC1	12	53453704	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	51698454	53453704	80398191	42	54233										
HAL	0	genome.wustl.edu	37	chr12	96388760	96388760	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gaagtcaggagacatggcatCaccctctataactaaaacaa	7	10	3	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	12	96388760	96388760	C	T	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.259	p.D87N	1.000	NULL	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	135	0	0	63	8	11.27	-	-	-	T	96388760	C	T	96388760	3	4	624	1	0	0	0	0	1	0	0	0	6998	826	29	2	1790	2	HAL	12	96388760	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	42935056	96388760	37463135	43	54234										
ANO4	0	genome.wustl.edu	37	chr12	101504243	101504243	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cccctagcaccacttctggcCttactgaataacataattga	5	13	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	12	101504243	101504243	C	G	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	silent	c.2211	p.A737	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	351	0	0	130	83	38.97	-	-	-	G	101504243	C	G	101504243	2	3	624	1	0	0	0	0	0	0	0	1	698	668	24	4		4	ANO4	12	101504243	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	5115483	101504243	32347652	44	54235										
PTPN11	0	genome.wustl.edu	37	chr12	112884103	112884103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gtttcacccaaatatcactgGtgtggaggcagaaaacctac	9	10	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	12	112884103	112884103	G	A	SNP	PTPN11	ENST00000351677	human	ensembl	69_37n	1	known	missense	c.38	p.G13D	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295	333	0	0	120	55	31.43	-	-	-	A	112884103	G	A	112884103	3	1	624	1	0	0	0	0	1	0	0	0	12861	1261	44	4	44	4	PTPN11	12	112884103	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	11379860	112884103	20967792	45	54236										
PSME1	0	genome.wustl.edu	37	chr14	24605501	24605501	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ctcagggtccagcccgaggcCcaagccaaggtgagcgccgc	14	16	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	14	24605501	24605501	C	G	SNP	PSME1	ENST00000382708	human	ensembl	69_37n	1	known	silent	c.30	p.A10	1.000	pfam_Proteasome_activ_REG_asu,superfamily_Proteasome_activ_REG_asu/bsu	pfam_Proteasome_activ_REG_bsu,pfam_Proteasome_activ_REG_asu,superfamily_Proteasome_activ_REG_asu/bsu	-	no_errors	PSME1	HGNC	ENSG00000092010	10	0	0	15	6	28.57	-	-	-	G	24605501	C	G	24605501	2	3	624	1	0	0	0	0	0	0	0	1	12786	610	22	4		4	PSME1	14	24605501	Silent	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09		24605501	82744039	46	54237										
ITPK1	0	genome.wustl.edu	37	chr14	93412701	93412701	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	aaggcattgatgtcaatgacGgcgtgctgccctgtctggtt	13	9	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	14	93412701	93412701	G	C	SNP	ITPK1	ENST00000267615	human	ensembl	69_37n	-1	known	silent	c.876	p.A292	0.003	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605	28	0	0	23	67	74.44	-	-	-	C	93412701	G	C	93412701	2	2	624	1	0	0	0	0	0	0	0	1	7970	1103	39	3		3	ITPK1	14	93412701	Silent	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	68807200	93412701	13936839	47	54238										
DDX24	0	genome.wustl.edu	37	chr14	94524203	94524203	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atgctggactttaggaatatCcagaccccgagctgccacat	9	12	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	14	94524203	94524203	C	G	SNP	DDX24	ENST00000330836	human	ensembl	69_37n	-1	known	missense	c.1954	p.D652H	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737	119	0	0	34	81	70.43	-	-	-	G	94524203	C	G	94524203	3	3	624	1	0	0	0	0	1	0	0	0	4382	855	30	2	641	2	DDX24	14	94524203	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	1111502	94524203	12825337	48	54239										
CCDC78	0	genome.wustl.edu	37	chr16	774397	774397	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ggtagctgcgggcagcccggGccagctgctgctcacggctg	17	14	1	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	16	774397	774397	G	C	SNP	CCDC78	ENST00000293889	human	ensembl	69_37n	-1	known	missense	c.878	p.A293G	1.000	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004	14	0	0	32	21	39.62	-	-	-	C	774397	G	C	774397	3	2	624	1	0	0	0	0	1	0	0	0	2879	1203	42	4	462	4	CCDC78	16	774397	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		774397	89580356	49	54240										
SGSM2	0	genome.wustl.edu	37	chr17	2270688	2270688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gcggaacctcacagctcccaAtccgatgaaaggttcttatc	8	13	2	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	2270688	2270688	A	G	SNP	SGSM2	ENST00000268989	human	ensembl	69_37n	1	known	missense	c.1412	p.N471S	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	36	0	0	24	20	45.45	-	-	-	G	2270688	A	G	2270688	3	3	624	1	0	0	0	0	1	0	0	0	14311	101	4	5	1458	5	SGSM2	17	2270688	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09		2270688	78924522	50	54241										
TP53	0	genome.wustl.edu	37	chr17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cgcccatgcaggaactgttaCacatgtagttgtagtggatg	12	8	0	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	7577568	7577568	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.713	p.C238F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	82	0	0	47	35	42.68	-	-	-	A	7577568	C	A	7577568	3	1	624	1	0	0	0	0	1	0	0	0	16477	478	17	4	577	4	TP53	17	7577568	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	5306880	7577568	73617642	51	54242										
NOS2	0	genome.wustl.edu	37	chr17	26087755	26087755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tgggagggatcctcggggagGtggaagccgctggcactgaa	19	8	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	26087755	26087755	G	A	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	silent	c.2904	p.H968	0.870	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	16	0	0	54	25	31.65	-	-	-	A	26087755	G	A	26087755	2	1	624	1	0	0	0	0	0	0	0	1	10615	1252	44	4		4	NOS2	17	26087755	Silent	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	18510187	26087755	55107455	52	54243										
SLC4A1	0	genome.wustl.edu	37	chr17	42330612	42330612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ggcatgggtgacggaacgcaCggtggtggcactgagccagg	19	9	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	42330612	42330612	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.2185	p.V729M	0.997	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	12	0	0	27	29	51.79	-	-	-	T	42330612	C	T	42330612	3	4	624	1	0	0	0	0	1	0	0	0	14739	536	19	1	566	1	SLC4A1	17	42330612	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	16242857	42330612	38864598	53	54244										
MYCBPAP	0	genome.wustl.edu	37	chr17	48600415	48600415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	catttggtatgactggcgacGgcagcaccagccggacactt	12	12	0	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	48600415	48600415	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	69_37n	1	known	missense	c.1502	p.R501Q	0.969	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	80	0	0	125	42	25.15	-	-	-	A	48600415	G	A	48600415	3	1	624	1	0	0	0	0	1	0	0	0	10091	1116	39	1	1544	1	MYCBPAP	17	48600415	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	6269803	48600415	32594795	54	54245										
ABCA10	0	genome.wustl.edu	37	chr17	67188786	67188786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cttcccattagacagaaataCtttcctatctgagtagaaag	6	9	1	4			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	17	67188786	67188786	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1789	p.V597L	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	473	0	0	155	55	26.19	-	-	-	A	67188786	C	A	67188786	3	1	624	1	0	0	0	0	1	0	0	0	29	565	20	4	2938	4	ABCA10	17	67188786	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	18588371	67188786	14006424	55	54246										
PTPN2	0	genome.wustl.edu	37	chr18	12825813	12825813	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gcaagaaaggtcttacattgAtattttctaattgtagtaga	8	4	2	3			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	18	12825813	12825813	A	C	SNP	PTPN2	ENST00000309660	human	ensembl	69_37n	-1	known	missense	c.491	p.I164S	1.000	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-1/2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354	379	0	0	85	57	40.14	-	-	-	C	12825813	A	C	12825813	3	2	624	1	0	0	0	0	1	0	0	0	12866	333	12	5	802	5	PTPN2	18	12825813	Missense_Mutation	SNP	A	TCGA-C8-A12L-01A-11D-A10Y-09		12825813	65251435	56	54247										
PGLYRP2	0	genome.wustl.edu	37	chr19	15586540	15586540	+	Frame_Shift_Del	DEL	A	A	-													0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gccgtcggaagttgctgcggAaccctgggtctctggccacc							TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	19	15586540	15586540	A	-	DEL	PGLYRP2	ENST00000292609	human	ensembl	69_37n	-1	known	frame_shift_del	c.941	p.F314fs	0.225	NULL	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031	14	0	0	40	36	46.75	-	-	-	-	15586540	A	-	15586540	7	5	624	1	0	1	0	1	0	0	0	0	11868	246	9	0	805	0	PGLYRP2	19	15586540	Frame_Shift_Del	DEL	A	TCGA-C8-A12L-01A-11D-A10Y-09		15586540	43542443	57	54248										
HAUS5	0	genome.wustl.edu	37	chr19	36110636	36110636	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gccccacattctgttgggcaCgctgctgcggcacaggccgg	14	15	1	0			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	19	36110636	36110636	C	G	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	missense	c.1382	p.T461R	0.655	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	8	0	0	26	11	29.73	-	-	-	G	36110636	C	G	36110636	3	3	624	1	0	0	0	0	1	0	0	0	7020	536	19	3	1440	3	HAUS5	19	36110636	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	20524096	36110636	23018347	58	54249										
RYR1	0	genome.wustl.edu	37	chr19	38960007	38960007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atctgaacctgggccaggacGtgagctctctgaggttcttt	12	10	3	3			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	19	38960007	38960007	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.3619	p.V1207M	1.000	superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	53	0	0	102	23	18.4	-	-	-	A	38960007	G	A	38960007	3	1	624	1	0	0	0	0	1	0	0	0	13854	1145	40	1	3725	1	RYR1	19	38960007	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	2849371	38960007	20168976	59	54250										
GIPR	0	genome.wustl.edu	37	chr19	46181247	46181247	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	atgcgctgccgggattaccgGctgaggtgagggcatgcgtt	17	9	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	19	46181247	46181247	G	T	SNP	GIPR	ENST00000590918	human	ensembl	69_37n	1	known	silent	c.1008	p.R336	0.967	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GIPR	HGNC	ENSG00000010310	69	0	0	71	36	33.64	-	-	-	T	46181247	G	T	46181247	2	4	624	1	0	0	0	0	0	0	0	1	6447	1190	42	4		4	GIPR	19	46181247	Silent	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	7221240	46181247	12947736	60	54251										
KLK5	0	genome.wustl.edu	37	chr19	51452007	51452007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	agcacgctgatattcaagcaCtggaggaccttagggaagtg	13	8	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	19	51452007	51452007	C	A	SNP	KLK5	ENST00000336334	human	ensembl	69_37n	-1	known	missense	c.615	p.Q205H	0.996	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	198	0	0	164	90	35.43	-	-	-	A	51452007	C	A	51452007	3	1	624	1	0	0	0	0	1	0	0	0	8460	564	20	4	274	4	KLK5	19	51452007	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	5270760	51452007	7676976	61	54252										
HM13	0	genome.wustl.edu	37	chr20	30137882	30137882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tctaggtatttggcaccaatGtgatggtgacagtggccaag	13	7	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	20	30137882	30137882	G	T	SNP	HM13	ENST00000398174	human	ensembl	69_37n	1	known	missense	c.682	p.V228L	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	HM13	HGNC	ENSG00000101294	244	1	0.41	158	49	23.67	-	-	-	T	30137882	G	T	30137882	3	4	624	1	0	0	0	0	1	0	0	0	7268	1377	48	4	775	4	HM13	20	30137882	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		30137882	32887638	62	54253										
ZNF295	0	genome.wustl.edu	37	chr21	43411588	43411588	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tttgacttggattttcagttGcttggaaagactaaggtctt	10	5	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	21	43411588	43411588	G	A	SNP	ZNF295	ENST00000310826	human	ensembl	69_37n	-1	known	nonsense	c.2617	p.Q873*	0.989	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF295	HGNC	ENSG00000173276	93	0	0	25	35	58.33	-	-	-	A	43411588	G	A	43411588	4	1	624	1	0	0	0	0	0	1	0	0	17923	1328	46	4	587	4	ZNF295	21	43411588	Nonsense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09		43411588	4718307	63	54254										
SFI1	0	genome.wustl.edu	37	chr22	31971290	31971291	+	Frame_Shift_Ins	INS	-	-	A													0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	ggcagcaggcctgggagcggINSagggagagcttgtacgctca							TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	22	31971290	31971291	-	A	INS	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	frame_shift_ins	c.996_997	p.R332fs	0.011:0.115	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	21	0	0	58	14	19.44	-	-	-	A	31971291	-	A	31971290	7	5	624	1	0	1	1	0	0	0	0	0	14244	1161	41	0	1030	0	SFI1	22	31971290	Frame_Shift_Ins	INS	-	TCGA-C8-A12L-01A-11D-A10Y-09		31971290	19333276	64	54255										
MYH9	0	genome.wustl.edu	37	chr22	36696999	36696999	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tcatggcagatctcttctaaTtcctgcttcttggcggtcag	9	11	5	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	22	36696999	36696999	T	G	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.2736	p.E912D	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	39	0	0	62	39	38.61	-	-	-	G	36696999	T	G	36696999	3	3	624	1	0	0	0	0	1	0	0	0	10114	1490	52	5	3226	5	MYH9	22	36696999	Missense_Mutation	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09	4725709	36696999	14607567	65	54256										
EGFL6	0	genome.wustl.edu	37	chrX	13645206	13645206	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	cgattgaaacttctcctaccTgacctgcaaccccaaagcaa	5	15	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	13645206	13645206	T	A	SNP	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	silent	c.1365	p.P455	0.001	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	201	0	0	95	60	38.71	-	-	-	A	13645206	T	A	13645206	2	1	624	1	0	0	0	0	0	0	0	1	4998	1567	55	5		5	EGFL6	23	13645206	Silent	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09		13645206	141625354	66	54257										
FAM47A	0	genome.wustl.edu	37	chrX	34148875	34148875	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	gtccgacgagtcttgggaggCtccgagcggagactggacgt	17	10	1	1			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	34148875	34148875	C	A	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1521	p.E507D	0.000	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	26	0	0	64	23	26.44	-	-	-	A	34148875	C	A	34148875	3	1	624	1	0	0	0	0	1	0	0	0	5615	796	28	4	858	4	FAM47A	23	34148875	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	20503669	34148875	121121685	67	54258										
HNRNPH2	0	genome.wustl.edu	37	chrX	100667034	100667034	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tgaaggtcaggggcctacccTggtcctgctcagccgatgaa	13	12	2	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	100667034	100667034	T	A	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	missense	c.58	p.W20R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	166	0	0	166	56	24.89	-	-	-	A	100667034	T	A	100667034	3	1	624	1	0	0	0	0	1	0	0	0	7318	1580	55	5	60	5	HNRNPH2	23	100667034	Missense_Mutation	SNP	T	TCGA-C8-A12L-01A-11D-A10Y-09	66518159	100667034	54603526	68	54259										
VSIG1	0	genome.wustl.edu	37	chrX	107316029	107316029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	actactggcataaacttgagGgaagagacatcgtgccagtg	12	8	0	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	107316029	107316029	G	A	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.643	p.G215R	0.908	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	327	1	0.3	135	71	34.47	-	-	-	A	107316029	G	A	107316029	3	1	624	1	0	0	0	0	1	0	0	0	17319	1233	43	4	661	4	VSIG1	23	107316029	Missense_Mutation	SNP	G	TCGA-C8-A12L-01A-11D-A10Y-09	6648995	107316029	47954531	69	54260										
DDX26B	0	genome.wustl.edu	37	chrX	134706902	134706902	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	caggggaaactgcacttagaCtgacagaattgaacaccaaa	9	9	0	4			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	134706902	134706902	C	G	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.1450	p.L484V	0.966	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	283	0	0	81	20	19.8	-	-	-	G	134706902	C	G	134706902	3	3	624	1	0	0	0	0	1	0	0	0	4384	564	20	4	1492	4	DDX26B	23	134706902	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	27390873	134706902	20563658	70	54261										
SLITRK2	0	genome.wustl.edu	37	chrX	144905067	144905067	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0563380281690141	4	0.99043758096535	0.754273504273504	1.13141025641026	0.565705128205128	1	1	0	tgacctgcagcccaaaccgaCcagtccaaagaaactctacc	6	16	1	2			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	998a465a-d084-4d7f-8c02-8c5be1e1ee27	8fedd128-c3e3-451c-8a22-fc76a2e8103e	X	144905067	144905067	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	missense	c.1124	p.T375N	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	87	0	0	109	23	17.42	-	-	-	A	144905067	C	A	144905067	3	1	624	1	0	0	0	0	1	0	0	0	14832	507	18	4	1126	4	SLITRK2	23	144905067	Missense_Mutation	SNP	C	TCGA-C8-A12L-01A-11D-A10Y-09	10198165	144905067	10365493	71	54262										
DAP3	0	genome.wustl.edu	37	chr1	155701787	155701787	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gactgggtctctctttaagcCccggaaagcctatctgcccc	9	15	3	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	1	155701787	155701787	C	A	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	missense	c.956	p.P319H	0.977	pfam_Ribosomal_S23/S29_mit	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	234	0	0	305	38	11.08	-	-	-	A	155701787	C	A	155701787	3	1	625	1	0	0	0	0	1	0	0	0	4266	623	22	4	994	4	DAP3	1	155701787	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		155701787	93548834	1	54263										
PYHIN1	0	genome.wustl.edu	37	chr1	158913619	158913619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgacaatctatgaaattcagGataaaacaggaagtatggct	9	6	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	1	158913619	158913619	G	T	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.1042	p.D348Y	0.018	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	182	0	0	94	128	57.66	-	-	-	T	158913619	G	T	158913619	3	4	625	1	0	0	0	0	1	0	0	0	12948	1174	41	2	1060	2	PYHIN1	1	158913619	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	3211832	158913619	90337002	2	54264										
HNRPLL	0	genome.wustl.edu	37	chr2	38795342	38795342	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	aataaagcattttacttactCggcactcttatctgatagtg	6	8	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	2	38795342	38795342	C	G	SNP	HNRPLL	ENST00000441689	human	ensembl	69_37n	-1	putative	missense	c.391	p.E131Q	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HNRPLL	HGNC	ENSG00000143889	364	0	0	93	144	60.25	-	-	-	G	38795342	C	G	38795342	3	3	625	1	0	0	0	0	1	0	0	0	7328	898	31	3	64	3	HNRPLL	2	38795342	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		38795342	204404031	3	54265										
OR6B3	0	genome.wustl.edu	37	chr2	240984860	240984860	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacagcatggtggccaggagTggaaacaccaggatgatgaa	15	7	0	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	2	240984860	240984860	T	C	SNP	OR6B3	ENST00000319423	human	ensembl	69_37n	-1	known	silent	c.630	p.P210	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6B3	HGNC	ENSG00000178586	138	1	0.72	83	52	38.52	-	-	-	C	240984860	T	C	240984860	2	2	625	1	0	0	0	0	0	0	0	1	11262	1683	59	5		5	OR6B3	2	240984860	Silent	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	202189518	240984860	2214513	4	54266										
CACNA2D3	0	genome.wustl.edu	37	chr3	54786629	54786629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gtttgtcttcccttcaggttCgcatcttcacatacctcatt	5	13	5	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	3	54786629	54786629	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.1171	p.R391C	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	185	0	0	134	34	20.24	-	-	-	T	54786629	C	T	54786629	3	4	625	1	0	0	0	0	1	0	0	0	2575	884	31	1	1217	1	CACNA2D3	3	54786629	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		54786629	143235801	5	54267										
GUF1	0	genome.wustl.edu	37	chr4	44682858	44682858	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttaaatctcattgatacacCggtaagtttaatattaattt	4	5	1	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	4	44682858	44682858	C	G	SNP	GUF1	ENST00000281543	human	ensembl	69_37n	1	known	missense	c.425	p.P142R	1.000	pfam_ProtSyn_GTP-bd,pfam_Small_GTPase,prints_ProtSyn_GTP-bd,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_LepA_GTP-bd_C,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806	209	0	0	74	50	40.32	-	-	-	G	44682858	C	G	44682858	3	3	625	1	0	0	0	0	1	0	0	0	6950	666	23	3	435	3	GUF1	4	44682858	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		44682858	146471418	6	54268										
PPAT	0	genome.wustl.edu	37	chr4	57272683	57272683	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttccttaatcgagcagcaTttaccaattcgccattatgt	5	10	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	4	57272683	57272683	T	C	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	missense	c.380	p.N127S	1.000	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	224	0	0	175	28	13.79	-	-	-	C	57272683	T	C	57272683	3	2	625	1	0	0	0	0	1	0	0	0	12375	1493	52	5	1209	5	PPAT	4	57272683	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	12589825	57272683	133881593	7	54269										
CENPE	0	genome.wustl.edu	37	chr4	104059573	104059573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtccatcacttagtaaccTtttttcaggttttacttggt	6	8	2	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	4	104059573	104059573	T	C	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.6238	p.R2080G	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	553	1	0.18	418	93	18.2	-	-	-	C	104059573	T	C	104059573	3	2	625	1	0	0	0	0	1	0	0	0	3259	1608	56	5	1911	5	CENPE	4	104059573	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	46786890	104059573	87094703	8	54270										
DKK2	0	genome.wustl.edu	37	chr4	107845202	107845202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcccttcgcacagtcgcaaCgctggaaaatttccagccca	9	15	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	4	107845202	107845202	C	T	SNP	DKK2	ENST00000285311	human	ensembl	69_37n	-1	novel	missense	c.689	p.R230H	1.000	NULL	pfam_Dickkopf_N,superfamily_Zn2-C6_fun-type_DNA-bd	-	no_errors	DKK2	HGNC	ENSG00000155011	176	0	0	87	69	44.23	-	-	-	T	107845202	C	T	107845202	3	4	625	1	0	0	0	0	1	0	0	0	4581	536	19	1	94	1	DKK2	4	107845202	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	3785629	107845202	83309074	9	54271										
LARP1	0	genome.wustl.edu	37	chr5	154181757	154181757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaatctgactatgagattgAtgacagggatgtcaacaaga	12	5	2	5			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	5	154181757	154181757	A	T	SNP	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	missense	c.1676	p.D559V	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	208	0	0	183	81	30.68	-	-	-	T	154181757	A	T	154181757	3	4	625	1	0	0	0	0	1	0	0	0	8682	333	12	5	1718	5	LARP1	5	154181757	Missense_Mutation	SNP	A	TCGA-C8-A12M-01A-11D-A135-09		154181757	26733503	10	54272										
HFE	0	genome.wustl.edu	37	chr6	26093039	26093039	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggataagcagccaatggatgCcaaggagttcgaacctaaag	12	8	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	6	26093039	26093039	C	G	SNP	HFE	ENST00000357618	human	ensembl	69_37n	1	known	missense	c.743	p.A248G	0.741	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	HFE	HGNC	ENSG00000010704	222	0	0	135	32	19.05	-	-	-	G	26093039	C	G	26093039	3	3	625	1	0	0	0	0	1	0	0	0	7132	739	26	4	757	4	HFE	6	26093039	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		26093039	145022028	11	54273										
MYO6	0	genome.wustl.edu	37	chr6	76554660	76554663	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0	0	1	0	0	0	1	1	0	ctttgctaacaaagaaactgAcaaacagattttacagaacc							TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	6	76554660	76554663	ACAA	-	DEL	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	frame_shift_del	c.863_866	p.K289fs	1.000:1.000:1.000:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	248	0	0	131	62	32.12	-	-	-	-	76554663	ACAA	-	76554660	7	5	625	1	0	1	0	1	0	0	0	0	10153	275	10	0	897	0	MYO6	6	76554660	Frame_Shift_Del	DEL	ACAA	TCGA-C8-A12M-01A-11D-A135-09	50461621	76554660	94560407	12	54274										
TRRAP	0	genome.wustl.edu	37	chr7	98528431	98528431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgaaagcacttctctttgTcatgatggacttaactggag	9	9	2	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	7	98528431	98528431	T	A	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.3569	p.V1190D	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	320	1	0.31	195	124	38.87	-	-	-	A	98528431	T	A	98528431	3	1	625	1	0	0	0	0	1	0	0	0	16697	1667	58	5	3663	5	TRRAP	7	98528431	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09		98528431	60610232	13	54275										
CSMD1	0	genome.wustl.edu	37	chr8	3057330	3057330	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtagccaagggcaatgtttcCcctagaaacgaaaacagaga	10	9	0	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	8	3057330	3057330	C	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.3541	p.G1181R	0.632	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	79	0	0	14	10	41.67	-	-	-	T	3057330	C	T	3057330	3	4	625	1	0	0	0	0	1	0	0	0	3976	637	22	4	5746	4	CSMD1	8	3057330	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		3057330	143306692	14	54276										
TAF1L	0	genome.wustl.edu	37	chr9	32632815	32632815	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaaaggatttctcaccataGccagcatccttcagtcgttg	7	11	2	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	32632815	32632815	G	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.2763	p.G921	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	570	0	0	387	76	16.41	-	-	-	T	32632815	G	T	32632815	2	4	625	1	0	0	0	0	0	0	0	1	15615	958	34	4		4	TAF1L	9	32632815	Silent	SNP	G	TCGA-C8-A12M-01A-11D-A135-09		32632815	108580616	15	54277										
PRUNE2	0	genome.wustl.edu	37	chr9	79320728	79320728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tcgagttctgcattggatggGacaaactcccgtccaggctc	11	12	1	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	79320728	79320728	G	A	SNP	PRUNE2	ENST00000426088	human	ensembl	69_37n	-1	known	missense	c.4426	p.P1476S	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRUNE2	HGNC	ENSG00000106772	166	1	0.6	148	28	15.91	-	-	-	A	79320728	G	A	79320728	3	1	625	1	0	0	0	0	1	0	0	0	12721	1161	41	2	2852	2	PRUNE2	9	79320728	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	46687913	79320728	61892703	16	54278										
PPP3R2	0	genome.wustl.edu	37	chr9	104356697	104356697	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tgtaagaaaaaggctcatacGatgaggaccagcttcttgtg	11	7	2	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	104356697	104356697	G	A	SNP	PPP3R2	ENST00000374806	human	ensembl	69_37n	-1	known	silent	c.516	p.I172	0.002	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,prints_Parvalbumin,pfscan_EF_HAND_2	-	no_errors	PPP3R2	HGNC	ENSG00000188386	59	0	0	42	9	17.65	-	-	-	A	104356697	G	A	104356697	2	1	625	1	0	0	0	0	0	0	0	1	12478	1048	37	1		1	PPP3R2	9	104356697	Silent	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	25035969	104356697	36856734	17	54279										
GOLGA1	0	genome.wustl.edu	37	chr9	127683437	127683437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcaatggaaagctgctgaaTgagtgcttggagctcttgtt	12	6	2	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	127683437	127683437	T	C	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	missense	c.814	p.I272V	0.988	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	581	0	0	426	166	28.04	-	-	-	C	127683437	T	C	127683437	3	2	625	1	0	0	0	0	1	0	0	0	6603	1464	51	5	1545	5	GOLGA1	9	127683437	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	23326740	127683437	13529994	18	54280										
NTNG2	0	genome.wustl.edu	37	chr9	135073814	135073814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcgccatctttgccggcccCgacctgcgcaacatggacaa	9	16	1	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	135073814	135073814	C	T	SNP	NTNG2	ENST00000360670	human	ensembl	69_37n	1	known	silent	c.675	p.P225	0.040	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	11	0	0	6	9	60	-	-	-	T	135073814	C	T	135073814	2	4	625	1	0	0	0	0	0	0	0	1	10778	639	23	1		1	NTNG2	9	135073814	Silent	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	7390377	135073814	6139617	19	54281										
TTF1	0	genome.wustl.edu	37	chr9	135273709	135273709	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aacttgccaaatttaatagcGacacctagaattgggaagga	9	7	0	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	9	135273709	135273709	G	A	SNP	TTF1	ENST00000334270	human	ensembl	69_37n	-1	known	silent	c.1596	p.V532	0.007	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482	229	1	0.43	168	37	18.05	-	-	-	A	135273709	G	A	135273709	2	1	625	1	0	0	0	0	0	0	0	1	16815	1045	37	1		1	TTF1	9	135273709	Silent	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	199895	135273709	5939722	20	54282										
GATA3	0	genome.wustl.edu	37	chr10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C													0	0	1	0	0	0	1	1	0	gtcctccctgagccacatctINScgcccttcagccactccagc							TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	10	8115873	8115874	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	120	0	0	124	52	29.55	-	-	-	C	8115874	-	C	8115873	7	5	625	1	0	1	1	0	0	0	0	0	6305	1551	54	0	1240	0	GATA3	10	8115873	Frame_Shift_Ins	INS	-	TCGA-C8-A12M-01A-11D-A135-09		8115873	127418874	21	54283										
ANK3	0	genome.wustl.edu	37	chr10	61819641	61819641	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcccatcactcagtctactaGgggttctaaggggagattct	11	10	5	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	10	61819641	61819641	G	C	SNP	ANK3	ENST00000355288	human	ensembl	69_37n	-1	known	missense	c.2282	p.P761R	1.000	NULL	pfam_ZU5,pfam_Death,superfamily_DEATH-like,smart_ZU5,smart_Death,pfscan_Death,pfscan_ZU5	-	no_errors	ANK3	HGNC	ENSG00000151150	124	0	0	64	13	16.88	-	-	-	C	61819641	G	C	61819641	3	2	625	1	0	0	0	0	1	0	0	0	622	1000	35	4	739	4	ANK3	10	61819641	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	53703768	61819641	73715106	22	54284										
PSTK	0	genome.wustl.edu	37	chr10	124742808	124742809	+	Frame_Shift_Del	DEL	CT	CT	-													0	0	1	0	0	0	1	1	0	attcgttgggcttttgccagCtctttttagattgtcctctt							TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	10	124742808	124742809	CT	-	DEL	PSTK	ENST00000368887	human	ensembl	69_37n	1	known	frame_shift_del	c.529_530	p.L179fs	0.993:1.000	pfam_Chromatin_KTI12,tigrfam_L-seryl-tRNA_Sec_kinase_euk	pfam_Chromatin_KTI12,tigrfam_L-seryl-tRNA_Sec_kinase_euk	-	no_errors	PSTK	HGNC	ENSG00000179988	244	0	0	101	23	18.25	-	-	-	-	124742809	CT	-	124742808	7	5	625	1	0	1	0	1	0	0	0	0	12800	797	28	0	539	0	PSTK	10	124742808	Frame_Shift_Del	DEL	CT	TCGA-C8-A12M-01A-11D-A135-09	62923167	124742808	10791939	23	54285										
DNHD1	0	genome.wustl.edu	37	chr11	6561187	6561187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actgggaagcgcgccagctgCgcctgctcaacttcatcctg	11	15	2	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	6561187	6561187	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.3502	p.R1168C	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	48	0	0	52	19	26.76	-	-	-	T	6561187	C	T	6561187	3	4	625	1	0	0	0	0	1	0	0	0	4703	768	27	1	3573	1	DNHD1	11	6561187	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		6561187	128445329	24	54286										
KBTBD4	0	genome.wustl.edu	37	chr11	47594816	47594816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agggcttcacatggcatttgTctgtctctgtgtcaaagcac	10	10	4	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	47594816	47594816	T	C	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	missense	c.1271	p.D424G	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	146	0	0	66	19	22.35	-	-	-	C	47594816	T	C	47594816	3	2	625	1	0	0	0	0	1	0	0	0	8049	1667	58	5	337	5	KBTBD4	11	47594816	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	41033629	47594816	87411700	25	54287										
PTPRJ	0	genome.wustl.edu	37	chr11	48164480	48164480	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttgttttagatccccctcCtccagatggatcccctaata	5	13	0	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	48164480	48164480	C	G	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.2453	p.P818R	0.003	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	124	0	0	62	22	26.19	-	-	-	G	48164480	C	G	48164480	3	3	625	1	0	0	0	0	1	0	0	0	12887	681	24	4	2508	4	PTPRJ	11	48164480	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	569664	48164480	86842036	26	54288										
C11orf53	0	genome.wustl.edu	37	chr11	111156467	111156467	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ctgaccttgccacccagcacGagttgcctctcccagcttga	8	17	1	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	111156467	111156467	G	A	SNP	C11orf53	ENST00000280325	human	ensembl	69_37n	1	known	silent	c.399	p.T133	0.008	NULL	NULL	-	no_errors	C11orf53	HGNC	ENSG00000150750	52	0	0	15	11	42.31	-	-	-	A	111156467	G	A	111156467	2	1	625	1	0	0	0	0	0	0	0	1	1659	1045	37	1		1	C11orf53	11	111156467	Silent	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	62991987	111156467	23850049	27	54289										
OR8D4	0	genome.wustl.edu	37	chr11	123777212	123777212	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgaacaagcagagcttcagcTgcccctcttctgcctcttct	7	15	5	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	123777212	123777212	T	G	SNP	OR8D4	ENST00000321355	human	ensembl	69_37n	1	known	missense	c.74	p.L25R	0.678	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518	329	0	0	44	63	58.88	-	-	-	G	123777212	T	G	123777212	3	3	625	1	0	0	0	0	1	0	0	0	11306	1580	55	5	76	5	OR8D4	11	123777212	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	12620745	123777212	11229304	28	54290										
SRPR	0	genome.wustl.edu	37	chr11	126134994	126134994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtgtgtacgcagctgctccAcggccccagcacgaaatgta	11	13	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	11	126134994	126134994	A	G	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.1385	p.V462A	1.000	pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	133	0	0	68	23	25.27	-	-	-	G	126134994	A	G	126134994	3	3	625	1	0	0	0	0	1	0	0	0	15253	159	6	5	547	5	SRPR	11	126134994	Missense_Mutation	SNP	A	TCGA-C8-A12M-01A-11D-A135-09	2357782	126134994	8871522	29	54291										
LRP6	0	genome.wustl.edu	37	chr12	12397348	12397348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaagccaatcacatgccagCccatcgggggacaataatcc	8	15	1	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	12	12397348	12397348	C	T	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	silent	c.297	p.G99	0.876	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	227	0	0	147	25	14.53	-	-	-	T	12397348	C	T	12397348	2	4	625	1	0	0	0	0	0	0	0	1	9028	726	26	4		4	LRP6	12	12397348	Silent	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		12397348	121454547	30	54292										
GPR84	0	genome.wustl.edu	37	chr12	54757355	54757355	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaggaggagcccaaataccCtgcagaaggtggcaccggtg	14	10	0	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	12	54757355	54757355	C	A	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	missense	c.281	p.R94M	0.991	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	238	1	0.42	236	50	17.48	-	-	-	A	54757355	C	A	54757355	3	1	625	1	0	0	0	0	1	0	0	0	6764	681	24	4	913	4	GPR84	12	54757355	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	42360007	54757355	79094540	31	54293										
OR6C70	0	genome.wustl.edu	37	chr12	55863307	55863307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tactaaaaacaatgtgacaaTaagtgtcatcacagctaata	5	7	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	12	55863307	55863307	T	C	SNP	OR6C70	ENST00000327335	human	ensembl	69_37n	-1	known	missense	c.616	p.I206V	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954	166	0	0	103	24	18.9	-	-	-	C	55863307	T	C	55863307	3	2	625	1	0	0	0	0	1	0	0	0	11270	1406	49	5	324	5	OR6C70	12	55863307	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	1105952	55863307	77988588	32	54294										
PTPRB	0	genome.wustl.edu	37	chr12	70933795	70933795	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	acgggcagagggtctttctcGaccatggctgaaacataagg	13	9	2	2			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	12	70933795	70933795	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	nonsense	c.5602	p.R1868*	0.871	NULL	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	204	0	0	439	74	14.4	-	-	-	A	70933795	G	A	70933795	4	1	625	1	0	0	0	0	0	1	0	0	12879	1066	37	1	1089	1	PTPRB	12	70933795	Nonsense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	15070488	70933795	62918100	33	54295										
PITPNM2	0	genome.wustl.edu	37	chr12	123498580	123498580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcgccatatgtctcgttacGgctcttcttctgtggggaca	10	11	4	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	12	123498580	123498580	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	69_37n	-1	known	missense	c.88	p.R30C	1.000	pfam_PI_transfer,prints_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975	59	0	0	29	9	23.08	-	-	-	A	123498580	G	A	123498580	3	1	625	1	0	0	0	0	1	0	0	0	12025	1116	39	1	4053	1	PITPNM2	12	123498580	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	52564785	123498580	10353315	34	54296										
WBP4	0	genome.wustl.edu	37	chr13	41639395	41639395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccctgaaagcataccaagaGgatttgaaaagacttggctt	10	8	0	4			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	13	41639395	41639395	G	T	SNP	WBP4	ENST00000379487	human	ensembl	69_37n	1	known	missense	c.234	p.E78D	1.000	NULL	pfam_WW_Rsp5_WWP,pfam_Znf_U1-C,superfamily_WW_Rsp5_WWP,smart_Znf_U1,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688	100	1	0.99	40	19	32.2	-	-	-	T	41639395	G	T	41639395	3	4	625	1	0	0	0	0	1	0	0	0	17358	991	35	4	248	4	WBP4	13	41639395	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09		41639395	73530483	35	54297										
CPB2	0	genome.wustl.edu	37	chr13	46629931	46629931	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccatggccatgtgtatacctGgtatttttactaattttctc	6	9	1	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	13	46629931	46629931	G	T	SNP	CPB2	ENST00000181383	human	ensembl	69_37n	-1	known	silent	c.1053	p.T351	0.007	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618	228	0	0	28	54	65.85	-	-	-	T	46629931	G	T	46629931	2	4	625	1	0	0	0	0	0	0	0	1	3827	1335	47	4		4	CPB2	13	46629931	Silent	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	4990536	46629931	68539947	36	54298										
TMTC4	0	genome.wustl.edu	37	chr13	101278370	101278370	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggcagctgtctggttgcctTtatcagccaggtttttgcca	11	10	2	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	13	101278370	101278370	T	G	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.1541	p.K514T	0.965	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	160	0	0	93	93	50	-	-	-	G	101278370	T	G	101278370	3	3	625	1	0	0	0	0	1	0	0	0	16358	1841	64	5	769	5	TMTC4	13	101278370	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	54648439	101278370	13891508	37	54299										
DUOX1	0	genome.wustl.edu	37	chr15	45444508	45444508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcctttgccgcacatcacaCgggcatcacagacaccaccc	7	19	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	15	45444508	45444508	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3218	p.T1073M	0.001	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	125	0	0	111	22	16.54	-	-	-	T	45444508	C	T	45444508	3	4	625	1	0	0	0	0	1	0	0	0	4835	536	19	1	3312	1	DUOX1	15	45444508	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		45444508	57086884	38	54300										
NEIL1	0	genome.wustl.edu	37	chr15	75647144	75647144	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaaggggaggaggaaggggCgacaggcagcctctggtggg	22	6	1	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	15	75647144	75647144	C	T	SNP	NEIL1	ENST00000355059	human	ensembl	69_37n	1	known	nonsense	c.1087	p.R363*	0.000	NULL	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398	29	0	0	26	6	18.18	-	-	-	T	75647144	C	T	75647144	4	4	625	1	0	0	0	0	0	1	0	0	10390	760	27	1	1117	1	NEIL1	15	75647144	Nonsense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	30202636	75647144	26884248	39	54301										
WWOX	0	genome.wustl.edu	37	chr16	78466448	78466448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcctctctccaacaaaaaaCgactattgggcgatgctggc	9	13	1	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	16	78466448	78466448	C	T	SNP	WWOX	ENST00000566780	human	ensembl	69_37n	1	known	silent	c.855	p.N285	0.000	NULL	pfam_WW_Rsp5_WWP,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153	188	0	0	116	24	17.14	-	-	-	T	78466448	C	T	78466448	2	4	625	1	0	0	0	0	0	0	0	1	17511	535	19	1		1	WWOX	16	78466448	Silent	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		78466448	11888305	40	54302										
PELP1	0	genome.wustl.edu	37	chr17	4576281	4576281	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcccactgagggcatggggcCcggaggatggaacggtgggg	21	9	0	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	4576281	4576281	C	A	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.2437	p.G813C	0.374	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	50	0	0	24	37	60.66	-	-	-	A	4576281	C	A	4576281	3	1	625	1	0	0	0	0	1	0	0	0	11798	623	22	4	1395	4	PELP1	17	4576281	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		4576281	76618929	41	54303										
COPS3	0	genome.wustl.edu	37	chr17	17163709	17163709	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagtgaaggtttcactgtgcTtattcaccaggtttcggagt	12	7	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	17163709	17163709	T	C	SNP	COPS3	ENST00000268717	human	ensembl	69_37n	-1	known	missense	c.842	p.K281R	1.000	pfam_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS3	HGNC	ENSG00000141030	620	1	0.16	544	116	17.58	-	-	-	C	17163709	T	C	17163709	3	2	625	1	0	0	0	0	1	0	0	0	3764	1609	56	5	449	5	COPS3	17	17163709	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	12587428	17163709	64031501	42	54304										
CRHR1	0	genome.wustl.edu	37	chr17	43906585	43906585	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctctcctgctccagaaaaAaagcaaggtgcactaccatg	7	13	1	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	43906585	43906585	A	C	SNP	CRHR1	ENST00000398285	human	ensembl	69_37n	1	known	missense	c.332	p.K111T	1.000	smart_GPCR_2_extracellular_dom,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088	126	0	0	44	36	45	-	-	-	C	43906585	A	C	43906585	3	2	625	1	0	0	0	0	1	0	0	0	3901	14	1	5	350	5	CRHR1	17	43906585	Missense_Mutation	SNP	A	TCGA-C8-A12M-01A-11D-A135-09	26742876	43906585	37288625	43	54305										
TRIM25	0	genome.wustl.edu	37	chr17	54978817	54978817	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctggagccgcccgatgcaCtgcttcagctcgtttttgag	11	13	1	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	54978817	54978817	C	G	SNP	TRIM25	ENST00000316881	human	ensembl	69_37n	-1	known	missense	c.1050	p.Q350H	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM25	HGNC	ENSG00000121060	386	0	0	776	195	20.06	-	-	-	G	54978817	C	G	54978817	3	3	625	1	0	0	0	0	1	0	0	0	16595	564	20	4	866	4	TRIM25	17	54978817	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	11072232	54978817	26216393	44	54306										
TANC2	0	genome.wustl.edu	37	chr17	61428682	61428682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagcagaatttcacaaaccgGattatggggatacaattgta	9	6	1	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	61428682	61428682	G	T	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.1657	p.D553Y	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	295	0	0	164	25	13.23	-	-	-	T	61428682	G	T	61428682	3	4	625	1	0	0	0	0	1	0	0	0	15637	1174	41	2	1699	2	TANC2	17	61428682	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	6449865	61428682	19766528	45	54307										
SMURF2	0	genome.wustl.edu	37	chr17	62553744	62553745	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	accggattaactgcagaatcAggattgatctgcaatgtata							TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	62553744	62553745	AG	-	DEL	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	frame_shift_del	c.1413_1412	p.P471fs	0.990:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	177	0	0	304	46	13.03	-	-	-	-	62553745	AG	-	62553744	7	5	625	1	0	1	0	1	0	0	0	0	14909	175	7	0	861	0	SMURF2	17	62553744	Frame_Shift_Del	DEL	AG	TCGA-C8-A12M-01A-11D-A135-09	1125062	62553744	18641466	46	54308										
ABCA5	0	genome.wustl.edu	37	chr17	67282161	67282161	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagagattctgtggcacaaTatttgtctatgtacatgcta	8	6	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	67282161	67282161	T	C	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.2150	p.Y717C	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	276	0	0	166	44	20.95	-	-	-	C	67282161	T	C	67282161	3	2	625	1	0	0	0	0	1	0	0	0	35	1406	49	5	2870	5	ABCA5	17	67282161	Missense_Mutation	SNP	T	TCGA-C8-A12M-01A-11D-A135-09	4728417	67282161	13913049	47	54309										
LGALS3BP	0	genome.wustl.edu	37	chr17	76968195	76968195	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	caggtgggcgaggtgtaaatCcggggcttgtaggtatcctc	16	8	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	17	76968195	76968195	C	T	SNP	LGALS3BP	ENST00000262776	human	ensembl	69_37n	-1	known	silent	c.1221	p.R407	0.421	NULL	pfam_Srcr_rcpt,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,prints_Srcr_rcpt,pfscan_BTB/POZ-like,pfscan_Srcr_rcpt	-	no_errors	LGALS3BP	HGNC	ENSG00000108679	105	0	0	489	129	20.81	-	-	-	T	76968195	C	T	76968195	2	4	625	1	0	0	0	0	0	0	0	1	8798	842	30	2		2	LGALS3BP	17	76968195	Silent	SNP	C	TCGA-C8-A12M-01A-11D-A135-09	9686034	76968195	4227015	48	54310										
NR1H2	0	genome.wustl.edu	37	chr19	50881600	50881600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggccaggcgctatgcctgcCggggtggcggaacctgccag	18	13	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	19	50881600	50881600	C	T	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	missense	c.376	p.R126W	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	24	0	0	13	10	43.48	-	-	-	T	50881600	C	T	50881600	3	4	625	1	0	0	0	0	1	0	0	0	10690	643	23	1	386	1	NR1H2	19	50881600	Missense_Mutation	SNP	C	TCGA-C8-A12M-01A-11D-A135-09		50881600	8247383	49	54311										
TMX4	0	genome.wustl.edu	37	chr20	8000123	8000123	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctccatcaccagcgtccaGttggaggcggtcatgggctg	13	14	2	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	20	8000123	8000123	G	C	SNP	TMX4	ENST00000246024	human	ensembl	69_37n	-1	known	missense	c.138	p.N46K	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX4	HGNC	ENSG00000125827	14	0	0	13	5	27.78	-	-	-	C	8000123	G	C	8000123	3	2	625	1	0	0	0	0	1	0	0	0	16364	1020	36	4	943	4	TMX4	20	8000123	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09		8000123	55025397	50	54312										
PCDH19	0	genome.wustl.edu	37	chrX	99663201	99663201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agatctccagctcgatctgtGctgccgggaaactgggcgca	13	12	2	1			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	X	99663201	99663201	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.395	p.A132E	0.230	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	101	1	0.98	115	33	22.3	-	-	-	T	99663201	G	T	99663201	3	4	625	1	0	0	0	0	1	0	0	0	11587	1319	46	4	3075	4	PCDH19	23	99663201	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09		99663201	55607359	51	54313										
COL4A5	0	genome.wustl.edu	37	chrX	107814670	107814670	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggatttccaggcagtcccGgttttcctggtttacagggt	13	9	0	0			TCGA-C8-A12M-01A-11D-A135-09	TCGA-C8-A12M-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a0a7b93-da6e-45b7-9a6f-190d79552b49	5f9aae0c-1d2f-4bb2-b801-32478f7058a2	X	107814670	107814670	G	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.412	p.G138C	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	290	0	0	144	31	17.61	-	-	-	T	107814670	G	T	107814670	3	4	625	1	0	0	0	0	1	0	0	0	3724	1116	39	3	438	3	COL4A5	23	107814670	Missense_Mutation	SNP	G	TCGA-C8-A12M-01A-11D-A135-09	8151469	107814670	47455890	52	54314										
ATP5F1	0	genome.wustl.edu	37	chr1	112002198	112002198	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	aacatgatgcgtcgaaaggaAcaagaacacatgataaattg	9	6	0	3			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	1	112002198	112002198	A	G	SNP	ATP5F1	ENST00000369722	human	ensembl	69_37n	1	known	silent	c.633	p.E211	1.000	pfam_ATPase_F0-cplx_bsu_mt	pfam_ATPase_F0-cplx_bsu_mt	-	no_errors	ATP5F1	HGNC	ENSG00000116459	103	0	0	70	16	18.6	-	-	-	G	112002198	A	G	112002198	2	3	626	1	0	0	0	0	0	0	0	1	1156	40	2	5		5	ATP5F1	1	112002198	Silent	SNP	A	TCGA-C8-A12N-01A-11D-A10Y-09		112002198	137248423	1	54315										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	150	0	0	45	72	61.54	-	-	-	A	178936091	G	A	178936091	3	1	626	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		178936091	19086339	2	54316										
EXOC3	0	genome.wustl.edu	37	chr5	457049	457049	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ctggccccggaagtggatgtCggcaccctggagccattgct	14	13	0	0			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	5	457049	457049	C	G	SNP	EXOC3	ENST00000503889	human	ensembl	69_37n	1	known	missense	c.701	p.S234W	0.000	pfam_Sec6	pfam_Sec6	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EXOC3	HGNC	ENSG00000180104	99	0	0	87	38	30.4	-	-	-	G	457049	C	G	457049	3	3	626	1	0	0	0	0	1	0	0	0	5339	871	31	3	1106	3	EXOC3	5	457049	Missense_Mutation	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09		457049	180458211	3	54317										
MAP3K1	0	genome.wustl.edu	37	chr5	56167804	56167805	+	Frame_Shift_Del	DEL	AC	AC	-													0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	tgcttgatgaagaaagtcttAcagtgtgtgaagacggctgc							TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	5	56167804	56167805	AC	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1369_1370	p.T457fs	0.994:0.997	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	180	0	0	127	59	31.55	-	-	-	-	56167805	AC	-	56167804	7	5	626	1	0	1	0	1	0	0	0	0	9314	391	14	0	1395	0	MAP3K1	5	56167804	Frame_Shift_Del	DEL	AC	TCGA-C8-A12N-01A-11D-A10Y-09	55710755	56167804	124747456	4	54318										
MAP3K1	0	genome.wustl.edu	37	chr5	56189440	56189440	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ggctcttcgttgtttagaacTtcaacctcaggacagacctc	8	12	3	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	5	56189440	56189440	T	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.4472	p.L1491H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	168	0	0	123	38	23.6	-	-	-	A	56189440	T	A	56189440	3	1	626	1	0	0	0	0	1	0	0	0	9314	1609	56	5	4550	5	MAP3K1	5	56189440	Missense_Mutation	SNP	T	TCGA-C8-A12N-01A-11D-A10Y-09	21636	56189440	124725820	5	54319										
RARS	0	genome.wustl.edu	37	chr5	167943847	167943847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	gtatggctgcatcaaatatgCtgacctttcccataaccggt	8	11	1	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	5	167943847	167943847	C	T	SNP	RARS	ENST00000231572	human	ensembl	69_37n	1	known	missense	c.1517	p.A506V	1.000	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS	HGNC	ENSG00000113643	186	0	0	118	56	32.18	-	-	-	T	167943847	C	T	167943847	3	4	626	1	0	0	0	0	1	0	0	0	13141	797	28	4	1567	4	RARS	5	167943847	Missense_Mutation	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09	111754407	167943847	12971413	6	54320										
NCOA7	0	genome.wustl.edu	37	chr6	126243897	126243897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	cctatagcacgttagagcacGggaccagcttaaagacgctc	10	12	0	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	6	126243897	126243897	G	C	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	1	known	missense	c.2440	p.G814R	1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	123	0	0	63	39	38.24	-	-	-	C	126243897	G	C	126243897	3	2	626	1	0	0	0	0	1	0	0	0	10306	1116	39	3	2486	3	NCOA7	6	126243897	Missense_Mutation	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		126243897	44871170	7	54321										
INHBA	0	genome.wustl.edu	37	chr7	41729851	41729851	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	tggtccagcaaccgctggatGctgctggagacagggaagac	15	10	0	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	7	41729851	41729851	G	A	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	silent	c.678	p.S226	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	98	0	0	61	24	28.24	-	-	-	A	41729851	G	A	41729851	2	1	626	1	0	0	0	0	0	0	0	1	7795	1310	46	4		4	INHBA	7	41729851	Silent	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		41729851	117408812	8	54322										
EPHA1	0	genome.wustl.edu	37	chr7	143095047	143095047	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	cgaaactcatgatcaggggaGaaagggccaggacccagtgg	15	9	2	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	7	143095047	143095047	G	C	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.1581	p.F527L	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	145	0	0	86	29	25.22	-	-	-	C	143095047	G	C	143095047	3	2	626	1	0	0	0	0	1	0	0	0	5202	933	33	2	1393	2	EPHA1	7	143095047	Missense_Mutation	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09	101365196	143095047	16043616	9	54323										
MLL3	0	genome.wustl.edu	37	chr7	151856014	151856014	+	Frame_Shift_Del	DEL	C	C	-													0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ttctcctcttcgtcctttttCcttttctttgagcgaggtgc							TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	7	151856014	151856014	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11604	p.K3870fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	453	0	0	285	131	30.47	-	-	-	-	151856014	C	-	151856014	7	5	626	1	0	1	0	1	0	0	0	0	9693	854	30	0	3195	0	MLL3	7	151856014	Frame_Shift_Del	DEL	C	TCGA-C8-A12N-01A-11D-A10Y-09	8760967	151856014	7282649	10	54324										
COL17A1	0	genome.wustl.edu	37	chr10	105811267	105811267	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ccctgtgggccaggagagccGctggaacctgagaaggagga	17	10	0	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	10	105811267	105811267	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	silent	c.2010	p.S670	0.001	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	83	0	0	65	35	35	-	-	-	A	105811267	G	A	105811267	2	1	626	1	0	0	0	0	0	0	0	1	3704	1078	38	1		1	COL17A1	10	105811267	Silent	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		105811267	29723480	11	54325										
PARVA	0	genome.wustl.edu	37	chr11	12399200	12399200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	agcctgcgccgcgccatggcCacctccccgcagaagtcgcc	11	20	0	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	11	12399200	12399200	C	T	SNP	PARVA	ENST00000334956	human	ensembl	69_37n	1	known	silent	c.126	p.A42	0.874	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVA	HGNC	ENSG00000197702	19	0	0	12	8	40	-	-	-	T	12399200	C	T	12399200	2	4	626	1	0	0	0	0	0	0	0	1	11541	581	21	4		4	PARVA	11	12399200	Silent	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09		12399200	122607316	12	54326										
OR1S2	0	genome.wustl.edu	37	chr11	57970851	57970851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ggaaaaagtacacgcctacaGtggttccgtagaacagtaat	10	8	0	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	11	57970851	57970851	G	A	SNP	OR1S2	ENST00000302592	human	ensembl	69_37n	-1	known	missense	c.803	p.T268I	0.120	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	269	0	0	154	76	33.04	-	-	-	A	57970851	G	A	57970851	3	1	626	1	0	0	0	0	1	0	0	0	11046	1029	36	4	177	4	OR1S2	11	57970851	Missense_Mutation	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09	45571651	57970851	77035665	13	54327										
TAS2R31	0	genome.wustl.edu	37	chr12	11183409	11183409	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	tagcgtggttacagtcgcatCtgaaaggtacactgcactcc	10	11	1	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	12	11183409	11183409	C	G	SNP	TAS2R31	ENST00000390675	human	ensembl	69_37n	-1	known	missense	c.526	p.D176H	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436	291	0	0	160	77	32.49	-	-	-	G	11183409	C	G	11183409	3	3	626	1	0	0	0	0	1	0	0	0	15666	913	32	2	407	2	TAS2R31	12	11183409	Missense_Mutation	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09		11183409	122668486	14	54328										
MLL2	0	genome.wustl.edu	37	chr12	49445909	49445909	+	Frame_Shift_Del	DEL	G	G	-													0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	gactcttccggtggagacaaGggcgactcctccagtggaga							TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	12	49445909	49445909	G	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	frame_shift_del	c.1557	p.L520fs	0.999	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	214	0	0	128	56	29.79	-	-	-	-	49445909	G	-	49445909	7	5	626	1	0	1	0	1	0	0	0	0	9692	987	35	0	15236	0	MLL2	12	49445909	Frame_Shift_Del	DEL	G	TCGA-C8-A12N-01A-11D-A10Y-09	38262500	49445909	84405986	15	54329										
SBNO1	0	genome.wustl.edu	37	chr12	123794131	123794131	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ttcatctccagaaccaagatCttgaacaagaaaaagaaaca	5	9	3	5			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	12	123794131	123794131	C	A	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	splice_site	c.3443-1	e26-1	1.000	-	-	-	no_errors	SBNO1	HGNC	ENSG00000139697	165	0	0	101	13	11.4	-	-	-	A	123794131	C	A	123794131	5	1	626	1	0	0	0	0	0	0	1	0	13949	927	32	2	763	2	SBNO1	12	123794131	Splice_Site	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09	74348222	123794131	10057764	16	54330										
RIMBP2	0	genome.wustl.edu	37	chr12	130907060	130907060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	cgctgccacggggaaacctcCggcccatgtgatccacccgt	11	17	0	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	12	130907060	130907060	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.2408	p.R803Q	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	31	0	0	18	12	40	-	-	-	T	130907060	C	T	130907060	3	4	626	1	0	0	0	0	1	0	0	0	13447	652	23	1	778	1	RIMBP2	12	130907060	Missense_Mutation	SNP	C	TCGA-C8-A12N-01A-11D-A10Y-09	7112929	130907060	2944835	17	54331										
MYH11	0	genome.wustl.edu	37	chr16	15831386	15831386	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	atctgcgcctggaggtcagcGatctgctcgtggaagtcgct	14	11	3	0			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	16	15831386	15831386	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.3234	p.I1078	0.998	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	110	0	0	122	69	36.13	-	-	-	T	15831386	G	T	15831386	2	4	626	1	0	0	0	0	0	0	0	1	10103	1048	37	3		3	MYH11	16	15831386	Silent	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		15831386	74523367	18	54332										
KRT27	0	genome.wustl.edu	37	chr17	38933368	38933368	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	atctcttcaacaactgttttGacaatggtggttttagatga	8	6	2	3			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	17	38933368	38933368	G	T	SNP	KRT27	ENST00000301656	human	ensembl	69_37n	-1	known	silent	c.1263	p.V421	0.981	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	287	0	0	128	89	41.01	-	-	-	T	38933368	G	T	38933368	2	4	626	1	0	0	0	0	0	0	0	1	8517	1277	45	2		2	KRT27	17	38933368	Silent	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		38933368	42261842	19	54333										
CD300LG	0	genome.wustl.edu	37	chr17	41931261	41931261	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	cattgccagggacttcccagTacgggcacgaaaggacttct	11	12	1	0			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	17	41931261	41931261	T	C	SNP	CD300LG	ENST00000317310	human	ensembl	69_37n	1	known	missense	c.568	p.Y190H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LG	HGNC	ENSG00000161649	69	0	0	53	44	44.9	-	-	-	C	41931261	T	C	41931261	3	2	626	1	0	0	0	0	1	0	0	0	3031	1638	57	5	582	5	CD300LG	17	41931261	Missense_Mutation	SNP	T	TCGA-C8-A12N-01A-11D-A10Y-09	2997893	41931261	39263949	20	54334										
NOTCH3	0	genome.wustl.edu	37	chr19	15276820	15276820	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	gagatgatgctagctgatgtGtcatctgcctcatcctcttc	9	11	4	3			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	19	15276820	15276820	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	silent	c.5445	p.D1815	0.696	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt-contain_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	36	0	0	34	12	26.09	-	-	-	A	15276820	G	A	15276820	2	1	626	1	0	0	0	0	0	0	0	1	10622	1368	48	4		4	NOTCH3	19	15276820	Silent	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09		15276820	43852163	21	54335										
TTLL8	0	genome.wustl.edu	37	chr22	50472912	50472912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	ctgcgaaaagtaatttcttgAattggagatgaaagcatcgc	10	6	1	3			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	22	50472912	50472912	A	G	SNP	TTLL8	ENST00000440475	human	ensembl	69_37n	-1	known	missense	c.853	p.S285P	0.004	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL8	HGNC	ENSG00000138892	33	0	0	30	7	18.92	-	-	-	G	50472912	A	G	50472912	3	3	626	1	0	0	0	0	1	0	0	0	16830	261	9	5		5	TTLL8	22	50472912	Missense_Mutation	SNP	A	TCGA-C8-A12N-01A-11D-A10Y-09		50472912	831654	22	54336										
ZC3H12B	0	genome.wustl.edu	37	chrX	64721753	64721753	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	gcgttcggtggctgatgagcTccgcatcagtgccaaactgt	13	11	1	2			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	X	64721753	64721753	T	C	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.1175	p.L392P	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	44	0	0	35	19	35.19	-	-	-	C	64721753	T	C	64721753	3	2	626	1	0	0	0	0	1	0	0	0	17658	1551	54	5	1193	5	ZC3H12B	23	64721753	Missense_Mutation	SNP	T	TCGA-C8-A12N-01A-11D-A10Y-09		64721753	90548807	23	54337										
PCDH19	0	genome.wustl.edu	37	chrX	99605659	99605659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	3	0.632416345063039	1.53960964408726	2.66865671641791	0.833955223880597	1	1	0	catacctcttgattaaatggGctcggctattcacgtagttg	9	9	2	1			TCGA-C8-A12N-01A-11D-A10Y-09	TCGA-C8-A12N-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694	b9c55351-2b86-4ced-bf0b-0bc91ada0f91	X	99605659	99605659	G	C	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.2660	p.A887G	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	190	1	0.52	121	51	29.48	-	-	-	C	99605659	G	C	99605659	3	2	626	1	0	0	0	0	1	0	0	0	11587	1203	42	4	798	4	PCDH19	23	99605659	Missense_Mutation	SNP	G	TCGA-C8-A12N-01A-11D-A10Y-09	34883906	99605659	55664901	24	54338										
SLC9A1	0	genome.wustl.edu	37	chr1	27429181	27429181	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tacttgtccttccagtggtgGtgaccgtagtggccacagat	12	10	0	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	1	27429181	27429181	G	A	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	silent	c.1629	p.H543	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	40	0	0	37	9	19.57	-	-	-	A	27429181	G	A	27429181	2	1	627	1	0	0	0	0	0	0	0	1	14798	1252	44	4		4	SLC9A1	1	27429181	Silent	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09		27429181	221821440	1	54339										
MCOLN2	0	genome.wustl.edu	37	chr1	85403443	85403443	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	atgtgagctacacaccttgtCatggtatggtcctaagacaa	9	9	1	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	1	85403443	85403443	C	T	SNP	MCOLN2	ENST00000370608	human	ensembl	69_37n	-1	known	missense	c.1330	p.D444N	1.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898	88	0	0	71	37	34.26	-	-	-	T	85403443	C	T	85403443	3	4	627	1	0	0	0	0	1	0	0	0	9467	826	29	2	386	2	MCOLN2	1	85403443	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	57974262	85403443	163847178	2	54340										
FLVCR1	0	genome.wustl.edu	37	chr1	213037133	213037133	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	acacacagaatgacacaaatCtcctggcttgtaatatcagc	6	11	2	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	1	213037133	213037133	C	T	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	1	known	missense	c.805	p.L269F	0.039	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	322	0	0	348	53	13.22	-	-	-	T	213037133	C	T	213037133	3	4	627	1	0	0	0	0	1	0	0	0	5991	913	32	2	811	2	FLVCR1	1	213037133	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	127633690	213037133	36213488	3	54341										
TRIM17	0	genome.wustl.edu	37	chr1	228596209	228596209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	acttggggaccctgtctttcCggctcacgttgtccctgcac	10	15	2	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	1	228596209	228596209	C	T	SNP	TRIM17	ENST00000295033	human	ensembl	69_37n	-1	known	missense	c.1127	p.R376Q	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	54	0	0	61	17	21.79	-	-	-	T	228596209	C	T	228596209	3	4	627	1	0	0	0	0	1	0	0	0	16589	652	23	1	310	1	TRIM17	1	228596209	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	15559076	228596209	20654412	4	54342										
GREB1	0	genome.wustl.edu	37	chr2	11772121	11772121	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	aatctgtaccacgcaatggaCggtgccagccatttgcacgt	10	12	1	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	2	11772121	11772121	C	T	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.4698	p.D1566	0.241	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	93	0	0	97	18	15.65	-	-	-	T	11772121	C	T	11772121	2	4	627	1	0	0	0	0	0	0	0	1	6811	535	19	1		1	GREB1	2	11772121	Silent	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		11772121	231427252	5	54343										
HSPD1	0	genome.wustl.edu	37	chr2	198353857	198353857	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	ttcaatttgagccttgtcacCttttccttttaagagcatgg	7	9	2	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	2	198353857	198353857	C	A	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	missense	c.1084	p.G362C	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	147	0	0	108	13	10.74	-	-	-	A	198353857	C	A	198353857	3	1	627	1	0	0	0	0	1	0	0	0	7482	681	24	4	653	4	HSPD1	2	198353857	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	186581736	198353857	44845516	6	54344										
MFF	0	genome.wustl.edu	37	chr2	228194484	228194484	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	gagtaaaggaacaagcagtgAcacatcactaggaaggtcag	12	7	2	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	2	228194484	228194484	A	T	SNP	MFF	ENST00000353339	human	ensembl	69_37n	1	known	missense	c.23	p.D8V	1.000	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958	162	0	0	172	34	16.5	-	-	-	T	228194484	A	T	228194484	3	4	627	1	0	0	0	0	1	0	0	0	9590	275	10	5	25	5	MFF	2	228194484	Missense_Mutation	SNP	A	TCGA-C8-A12O-01A-11D-A10Y-09	29840627	228194484	15004889	7	54345										
INPP4B	0	genome.wustl.edu	37	chr4	143114276	143114276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	caaatctatggagtagcttcCgaagaccaccattcttaaat	6	10	2	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	4	143114276	143114276	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.1145	p.R382Q	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	253	0	0	208	33	13.69	-	-	-	T	143114276	C	T	143114276	3	4	627	1	0	0	0	0	1	0	0	0	7807	652	23	1	1677	1	INPP4B	4	143114276	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		143114276	48040000	8	54346										
C5orf42	0	genome.wustl.edu	37	chr5	37158402	37158402	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tggaaagcttcagatttagaTagacatctgggaccaagagc	11	7	2	4			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	5	37158402	37158402	T	A	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.7736	p.Y2579F	0.404	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	273	0	0	256	84	24.71	-	-	-	A	37158402	T	A	37158402	3	1	627	1	0	0	0	0	1	0	0	0	2322	1406	49	5	1913	5	C5orf42	5	37158402	Missense_Mutation	SNP	T	TCGA-C8-A12O-01A-11D-A10Y-09		37158402	143756858	9	54347										
C5orf42	0	genome.wustl.edu	37	chr5	37169279	37169279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	atactggcttacattcaaatGggatgctggagtagtttgtg	12	5	1	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	5	37169279	37169279	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.6847	p.H2283Y	0.020	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	165	0	0	178	73	29.08	-	-	-	A	37169279	G	A	37169279	3	1	627	1	0	0	0	0	1	0	0	0	2322	1348	47	4	2822	4	C5orf42	5	37169279	Missense_Mutation	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09	10877	37169279	143745981	10	54348										
DAB2IP	0	genome.wustl.edu	37	chr9	124528882	124528882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tcagcgcctccctcttcctgCgcttcctctgcccagccatc	6	21	3	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	9	124528882	124528882	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.1570	p.R524C	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	46	0	0	51	8	13.56	-	-	-	T	124528882	C	T	124528882	3	4	627	1	0	0	0	0	1	0	0	0	4251	768	27	1	1520	1	DAB2IP	9	124528882	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		124528882	16684549	11	54349										
MASTL	0	genome.wustl.edu	37	chr10	27459378	27459378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	ccttaagctatcagtgcacaAaagtcaacaaaatgactgtg	7	9	2	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	10	27459378	27459378	A	G	SNP	MASTL	ENST00000375940	human	ensembl	69_37n	1	known	missense	c.1490	p.K497R	0.005	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MASTL	HGNC	ENSG00000120539	86	0	0	75	42	35.9	-	-	-	G	27459378	A	G	27459378	3	3	627	1	0	0	0	0	1	0	0	0	9399	14	1	5	1520	5	MASTL	10	27459378	Missense_Mutation	SNP	A	TCGA-C8-A12O-01A-11D-A10Y-09		27459378	108075369	12	54350										
PHRF1	0	genome.wustl.edu	37	chr11	610989	610991	+	In_Frame_Del	DEL	GGA	GGA	-													0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	cacatgcaggagcgtgctgtGgaggaggtgaagctggccat							TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	11	610989	610991	GGA	-	DEL	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	in_frame_del	c.4713_4715	p.E1573in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	83	0	0	119	37	23.27	-	-	-	-	610991	GGA	-	610989	7	5	627	1	0	1	0	1	0	0	0	0	11935	1335	47	0	4772	0	PHRF1	11	610989	In_Frame_Del	DEL	GGA	TCGA-C8-A12O-01A-11D-A10Y-09		610989	134395527	13	54351										
AIP	0	genome.wustl.edu	37	chr11	67254510	67254510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	accggacgctgcacagtgacGacgagggcaccgtgctggac	15	13	0	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	11	67254510	67254510	G	A	SNP	AIP	ENST00000279146	human	ensembl	69_37n	1	known	missense	c.133	p.D45N	0.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	AIP	HGNC	ENSG00000110711	34	0	0	80	11	12.09	-	-	-	A	67254510	G	A	67254510	3	1	627	1	0	0	0	0	1	0	0	0	435	1058	37	1	139	1	AIP	11	67254510	Missense_Mutation	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09	66643521	67254510	67752006	14	54352										
DNAJB13	0	genome.wustl.edu	37	chr11	73680349	73680349	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tgaccgtctgctcaacatccCcatcaatgacatcatccagt	5	15	4	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	11	73680349	73680349	C	G	SNP	DNAJB13	ENST00000339764	human	ensembl	69_37n	1	known	missense	c.779	p.P260R	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB13	HGNC	ENSG00000187726	79	0	0	67	14	17.28	-	-	-	G	73680349	C	G	73680349	3	3	627	1	0	0	0	0	1	0	0	0	4653	623	22	4	805	4	DNAJB13	11	73680349	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	6425839	73680349	61326167	15	54353										
ATP2B1	0	genome.wustl.edu	37	chr12	89998003	89998003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	agtaagttggaactgaaggaAttttgagatgctgtcataga	12	3	1	3			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	12	89998003	89998003	A	G	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.2563	p.F855L	1.000	tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	172	0	0	190	97	33.8	-	-	-	G	89998003	A	G	89998003	3	3	627	1	0	0	0	0	1	0	0	0	1143	101	4	5	1281	5	ATP2B1	12	89998003	Missense_Mutation	SNP	A	TCGA-C8-A12O-01A-11D-A10Y-09		89998003	43853892	16	54354										
MYCBP2	0	genome.wustl.edu	37	chr13	77644827	77644827	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	ttccaaccatatgttctttcAggtcagcatctgatgttgcc	7	11	4	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	13	77644827	77644827	A	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.11843	p.L3948P	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	169	0	0	82	86	51.19	-	-	-	G	77644827	A	G	77644827	3	3	627	1	0	0	0	0	1	0	0	0	10090	188	7	5	2253	5	MYCBP2	13	77644827	Missense_Mutation	SNP	A	TCGA-C8-A12O-01A-11D-A10Y-09		77644827	37525051	17	54355										
TSHR	0	genome.wustl.edu	37	chr14	81609772	81609772	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	ctttctcatgtgcaacctggCctttgcggatttctgcatgg	10	11	2	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	14	81609772	81609772	C	A	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.1370	p.A457D	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	571	0	0	725	335	31.57	-	-	-	A	81609772	C	A	81609772	3	1	627	1	0	0	0	0	1	0	0	0	16718	739	26	4	1545	4	TSHR	14	81609772	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		81609772	25739768	18	54356										
MEX3B	0	genome.wustl.edu	37	chr15	82336479	82336479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tcgaagcccacatcggtgccGttggcgtggaagtcgttctc	13	12	1	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	15	82336479	82336479	G	A	SNP	MEX3B	ENST00000329713	human	ensembl	69_37n	-1	known	silent	c.732	p.N244	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496	15	0	0	21	5	19.23	-	-	-	A	82336479	G	A	82336479	2	1	627	1	0	0	0	0	0	0	0	1	9581	1136	40	1		1	MEX3B	15	82336479	Silent	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09		82336479	20194913	19	54357										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	96	0	0	85	32	27.35	-	-	-	T	7577120	C	T	7577120	3	4	627	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		7577120	73618090	20	54358										
MYH8	0	genome.wustl.edu	37	chr17	10303960	10303960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tgttcaattccacctgagcaGaagttgccccaccggcttct	8	14	2	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	17	10303960	10303960	G	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.3482	p.S1161Y	0.883	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	93	0	0	52	15	22.39	-	-	-	T	10303960	G	T	10303960	3	4	627	1	0	0	0	0	1	0	0	0	10113	942	33	2	2387	2	MYH8	17	10303960	Missense_Mutation	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09	2726840	10303960	70891250	21	54359										
DNAH17	0	genome.wustl.edu	37	chr17	76487632	76487632	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	ggtgatgttggccaggtctcGcatgatggtggagaacaggc	17	7	1	3			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	17	76487632	76487632	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	nonsense	c.6520	p.R2174*	1.000	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	110	0	0	152	64	29.63	-	-	-	A	76487632	G	A	76487632	4	1	627	1	0	0	0	0	0	1	0	0	4637	1095	38	1	6982	1	DNAH17	17	76487632	Nonsense_Mutation	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09	66183672	76487632	4707578	22	54360										
ZNF814	0	genome.wustl.edu	37	chr19	58384420	58384420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	actggagctttcagcgaaagAttttccacattcactgcact	7	11	2	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	19	58384420	58384420	A	G	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.2338	p.S780P	0.024	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	207	0	0	146	57	28.08	-	-	-	G	58384420	A	G	58384420	3	3	627	1	0	0	0	0	1	0	0	0	18269	333	12	5	233	5	ZNF814	19	58384420	Missense_Mutation	SNP	A	TCGA-C8-A12O-01A-11D-A10Y-09		58384420	744563	23	54361										
POFUT1	0	genome.wustl.edu	37	chr20	30816166	30816166	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tacagaagtacatggtatggTcagacgaaatggtgaagacg	13	5	1	4			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	20	30816166	30816166	T	A	SNP	POFUT1	ENST00000375749	human	ensembl	69_37n	1	known	missense	c.643	p.S215T	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346	64	0	0	106	29	21.32	-	-	-	A	30816166	T	A	30816166	3	1	627	1	0	0	0	0	1	0	0	0	12257	1667	58	5	708	5	POFUT1	20	30816166	Missense_Mutation	SNP	T	TCGA-C8-A12O-01A-11D-A10Y-09		30816166	32209354	24	54362										
KIAA1755	0	genome.wustl.edu	37	chr20	36874487	36874487	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	tcgaaaggaggatagaggccCgccagggcatgctggatggc	17	9	0	1			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	20	36874487	36874487	C	T	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.45	p.A15	0.072	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	36	0	0	53	17	24.29	-	-	-	T	36874487	C	T	36874487	2	4	627	1	0	0	0	0	0	0	0	1	8309	639	23	1		1	KIAA1755	20	36874487	Silent	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	6058321	36874487	26151033	25	54363										
CDH4	0	genome.wustl.edu	37	chr20	60419757	60419757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	aagacaatgacatccccatcCggtacagcatcacgggagtg	10	12	1	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	20	60419757	60419757	C	T	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.610	p.R204W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	40	0	0	36	20	35.71	-	-	-	T	60419757	C	T	60419757	3	4	627	1	0	0	0	0	1	0	0	0	3141	643	23	1	628	1	CDH4	20	60419757	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09	23545270	60419757	2605763	26	54364										
RUNX1	0	genome.wustl.edu	37	chr21	36252860	36252860	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	gacagataacgtacctcttcCacttcgaccgacaaacctga	6	14	1	2			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	21	36252860	36252860	C	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.502	p.G168R	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	134	0	0	92	53	36.55	-	-	-	G	36252860	C	G	36252860	3	3	627	1	0	0	0	0	1	0	0	0	13832	603	21	4	993	4	RUNX1	21	36252860	Missense_Mutation	SNP	C	TCGA-C8-A12O-01A-11D-A10Y-09		36252860	11877035	27	54365										
GAGE2B	0	genome.wustl.edu	37	chrX	49236865	49236865	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.107142857142857	3	0.827819862835829	1.19440459110473	2.25609756097561	0.966898954703833	1	1	0	aagatcgacctatcggcctaGaccaagacgctacgtagagc	10	12	0	4			TCGA-C8-A12O-01A-11D-A10Y-09	TCGA-C8-A12O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	51dbda2a-106b-4597-aa49-609b677866c8	5d34bbb4-54c8-4a35-baee-80c72548ca34	X	49236865	49236865	G	C	SNP	GAGE2B	ENST00000381725	human	ensembl	69_37n	1	known	missense	c.35	p.R12T	0.002	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE2B	HGNC	ENSG00000231850	525	0	0	405	103	20.28	-	-	-	C	49236865	G	C	49236865	3	2	627	1	0	0	0	0	1	0	0	0	6240	942	33	2	37	2	GAGE2B	23	49236865	Missense_Mutation	SNP	G	TCGA-C8-A12O-01A-11D-A10Y-09		49236865	106033695	28	54366										
PADI6	0	genome.wustl.edu	37	chr1	17714946	17714946	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tataccttggccctcctcggGaaccacttgaaggagacttt	9	12	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	17714946	17714946	G	A	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	139	0	0	85	22	20.56	-	-	-	A	17714946	G	A	17714946	1	1	628	0	1	0	0	0	0	0	0	0	11454	1161	41	2		2	PADI6	1	17714946	RNA	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		17714946	231535675	1	54367										
UBR4	0	genome.wustl.edu	37	chr1	19487440	19487440	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	taattcctcccggcagccctCtactgtgcggcagaggctgc	11	15	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	19487440	19487440	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.5377	p.E1793K	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	174	0	0	81	23	22.12	-	-	-	T	19487440	C	T	19487440	3	4	628	1	0	0	0	0	1	0	0	0	17001	922	32	2	10450	2	UBR4	1	19487440	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1772494	19487440	229763181	2	54368										
PDIK1L	0	genome.wustl.edu	37	chr1	26448562	26448562	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctgataacatcctgatttctCaaaccaggttggataccagt	7	10	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	26448562	26448562	C	T	SNP	PDIK1L	ENST00000374269	human	ensembl	69_37n	1	known	nonsense	c.520	p.Q174*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PDIK1L	HGNC	ENSG00000175087	129	0	0	124	29	18.95	-	-	-	T	26448562	C	T	26448562	4	4	628	1	0	0	0	0	0	1	0	0	11746	827	29	2	526	2	PDIK1L	1	26448562	Nonsense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	6961122	26448562	222802059	3	54369										
KIAA0754	0	genome.wustl.edu	37	chr1	39877270	39877270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggttagagggacttgtttcaGattcagcatgtactgtgggt	14	5	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	39877270	39877270	G	A	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.925	p.D309N	0.113	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	147	0	0	138	28	16.87	-	-	-	A	39877270	G	A	39877270	3	1	628	1	0	0	0	0	1	0	0	0	8244	942	33	2	1335	2	KIAA0754	1	39877270	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	13428708	39877270	209373351	4	54370										
PTGER3	0	genome.wustl.edu	37	chr1	71478130	71478130	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgtgtgtcttgcagtgctcaActgatgtctgattgaagatc	11	7	3	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	71478130	71478130	A	T	SNP	PTGER3	ENST00000354608	human	ensembl	69_37n	-1	known	missense	c.935	p.V312D	0.861	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	162	0	0	117	27	18.75	-	-	-	T	71478130	A	T	71478130	3	4	628	1	0	0	0	0	1	0	0	0	12825	43	2	5	552	5	PTGER3	1	71478130	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	31600860	71478130	177772491	5	54371										
AK5	0	genome.wustl.edu	37	chr1	77883374	77883374	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tggacactggagagatcattGatacaggatctgattatgaa	11	5	2	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	77883374	77883374	G	A	SNP	AK5	ENST00000354567	human	ensembl	69_37n	1	known	missense	c.1033	p.D345N	0.487	NULL	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	204	0	0	139	35	20.11	-	-	-	A	77883374	G	A	77883374	3	1	628	1	0	0	0	0	1	0	0	0	443	1290	45	2	1063	2	AK5	1	77883374	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	6405244	77883374	171367247	6	54372										
PRPF38B	0	genome.wustl.edu	37	chr1	109241882	109241882	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtcttctagttttgacagagAattagaaagagagaaagaac	10	4	2	6			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	109241882	109241882	A	T	SNP	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	missense	c.881	p.E294V	1.000	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	53	0	0	34	15	30.61	-	-	-	T	109241882	A	T	109241882	3	4	628	1	0	0	0	0	1	0	0	0	12649	246	9	5	903	5	PRPF38B	1	109241882	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	31358508	109241882	140008739	7	54373										
SF3B4	0	genome.wustl.edu	37	chr1	149898614	149898614	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aagatgaccccaaaggcgctGaaagtatcataaagcaactt	8	9	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	149898614	149898614	G	C	SNP	SF3B4	ENST00000271628	human	ensembl	69_37n	-1	known	missense	c.360	p.F120L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	177	0	0	227	188	45.19	-	-	-	C	149898614	G	C	149898614	3	2	628	1	0	0	0	0	1	0	0	0	14241	1281	45	2	930	2	SF3B4	1	149898614	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	40656732	149898614	99352007	8	54374										
FLG2	0	genome.wustl.edu	37	chr1	152326999	152326999	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttgacccatgttgaccatagCcagatgattgacttgagcca	9	10	0	6			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	152326999	152326999	C	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.3263	p.G1088V	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	449	0	0	313	126	28.7	-	-	-	A	152326999	C	A	152326999	3	1	628	1	0	0	0	0	1	0	0	0	5969	739	26	4	3916	4	FLG2	1	152326999	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	2428385	152326999	96923622	9	54375										
OR6K6	0	genome.wustl.edu	37	chr1	158724994	158724994	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tggctgcctcctgcagatgtActttttccactcacttggta	8	12	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	158724994	158724994	A	T	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	missense	c.389	p.Y130F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	111	0	0	143	26	15.38	-	-	-	T	158724994	A	T	158724994	3	4	628	1	0	0	0	0	1	0	0	0	11277	391	14	5	391	5	OR6K6	1	158724994	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	6397995	158724994	90525627	10	54376										
PYHIN1	0	genome.wustl.edu	37	chr1	158914788	158914788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctgaaagccatctcaagactCctcagatgccaccaacaacc	5	16	2	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	158914788	158914788	C	A	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.1315	p.P439T	0.050	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	220	0	0	342	103	23.15	-	-	-	A	158914788	C	A	158914788	3	1	628	1	0	0	0	0	1	0	0	0	12948	855	30	2	1337	2	PYHIN1	1	158914788	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	189794	158914788	90335833	11	54377										
MRPS14	0	genome.wustl.edu	37	chr1	174983888	174983888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acgactaagcctccagcgccGcttcacaccacgcggacggg	11	17	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	174983888	174983888	G	A	SNP	MRPS14	ENST00000476371	human	ensembl	69_37n	-1	known	missense	c.304	p.R102W	1.000	pfam_Ribosomal_S14	pfam_Ribosomal_S14	-	no_errors	MRPS14	HGNC	ENSG00000120333	87	0	0	109	13	10.66	-	-	-	A	174983888	G	A	174983888	3	1	628	1	0	0	0	0	1	0	0	0	9896	1086	38	1	86	1	MRPS14	1	174983888	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	16069100	174983888	74266733	12	54378										
TNN	0	genome.wustl.edu	37	chr1	175116123	175116123	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tccattccttacgtggagttGaaaatccgccctcatggcta	8	12	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	175116123	175116123	G	C	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.3816	p.L1272F	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	71	0	0	87	15	14.71	-	-	-	C	175116123	G	C	175116123	3	2	628	1	0	0	0	0	1	0	0	0	16418	1281	45	2	3886	2	TNN	1	175116123	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	132235	175116123	74134498	13	54379										
GLRX2	0	genome.wustl.edu	37	chr1	193074652	193074652	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gccgccgccggtcacctcctCgcagctgagcgcgtcctccc	11	21	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	193074652	193074652	C	T	SNP	GLRX2	ENST00000367440	human	ensembl	69_37n	-1	known	silent	c.117	p.A39	0.001	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572	28	0	0	40	7	14.89	-	-	-	T	193074652	C	T	193074652	2	4	628	1	0	0	0	0	0	0	0	1	6512	871	31	1		1	GLRX2	1	193074652	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	17958529	193074652	56175969	14	54380										
MARK1	0	genome.wustl.edu	37	chr1	220804452	220804452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	catatactgagcctgatccgGatttcaatgacacaaaaaga	7	9	1	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	220804452	220804452	G	A	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.985	p.D329N	1.000	pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	187	0	0	141	72	33.8	-	-	-	A	220804452	G	A	220804452	3	1	628	1	0	0	0	0	1	0	0	0	9383	1174	41	2	1023	2	MARK1	1	220804452	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	27729800	220804452	28446169	15	54381										
RYR2	0	genome.wustl.edu	37	chr1	237532863	237532863	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtggtggtcatcgaacactCctctacggacatgccatatt	10	11	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	237532863	237532863	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.333	p.L111	0.999	pfam_Ins145_P3_rcpt,smart_MIR_motif,prints_Ryan_recept,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	341	0	0	298	109	26.78	-	-	-	T	237532863	C	T	237532863	2	4	628	1	0	0	0	0	0	0	0	1	13855	842	30	2		2	RYR2	1	237532863	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	16728411	237532863	11717758	16	54382										
OR2L8	0	genome.wustl.edu	37	chr1	248112345	248112345	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acacccatgtatttcctactGagtcagctctccctcattga	5	14	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	1	248112345	248112345	G	A	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	silent	c.186	p.L62	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	461	1	0.22	532	87	14.03	-	-	-	A	248112345	G	A	248112345	2	1	628	1	0	0	0	0	0	0	0	1	11082	1277	45	2		2	OR2L8	1	248112345	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	10579482	248112345	1138276	17	54383										
RHOB	0	genome.wustl.edu	37	chr2	20647544	20647544	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtccccgaggtgaagcacttCtgtcccaatgtgcccatcat	9	14	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	2	20647544	20647544	C	T	SNP	RHOB	ENST00000272233	human	ensembl	69_37n	1	known	silent	c.318	p.F106	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOB	HGNC	ENSG00000143878	47	0	0	81	15	15.62	-	-	-	T	20647544	C	T	20647544	2	4	628	1	0	0	0	0	0	0	0	1	13416	912	32	2		2	RHOB	2	20647544	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		20647544	222551829	18	54384										
ADCY3	0	genome.wustl.edu	37	chr2	25065185	25065185	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgctggtccttctggctctcGtctttcttcatgtctttcag	8	12	7	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	2	25065185	25065185	G	A	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	silent	c.894	p.D298	0.898	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	443	0	0	393	61	13.44	-	-	-	A	25065185	G	A	25065185	2	1	628	1	0	0	0	0	0	0	0	1	295	1136	40	1		1	ADCY3	2	25065185	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	4417641	25065185	218134188	19	54385										
FOSL2	0	genome.wustl.edu	37	chr2	28635012	28635012	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtggtgaaacaggagcccctGgaagaggacagcccctcgtc	14	12	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	2	28635012	28635012	G	A	SNP	FOSL2	ENST00000264716	human	ensembl	69_37n	1	known	silent	c.678	p.L226	0.754	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL2	HGNC	ENSG00000075426	10	0	0	20	7	25.93	-	-	-	A	28635012	G	A	28635012	2	1	628	1	0	0	0	0	0	0	0	1	6034	1335	47	4		4	FOSL2	2	28635012	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	3569827	28635012	214564361	20	54386										
FAP	0	genome.wustl.edu	37	chr2	163072487	163072487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtatcgataataaatatccGaacaacgggattcttagctc	8	8	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	2	163072487	163072487	G	C	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.787	p.R263G	0.999	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	109	0	0	77	18	18.95	-	-	-	C	163072487	G	C	163072487	3	2	628	1	0	0	0	0	1	0	0	0	5719	1057	37	3	1563	3	FAP	2	163072487	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	134437475	163072487	80126886	21	54387										
SCN1A	0	genome.wustl.edu	37	chr2	166903316	166903316	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgctttttaagctgttcaatCatctgctgaaattcggcctc	7	10	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	2	166903316	166903316	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.1341	p.M447I	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	297	0	0	151	33	17.93	-	-	-	G	166903316	C	G	166903316	3	3	628	1	0	0	0	0	1	0	0	0	14002	826	29	2	4760	2	SCN1A	2	166903316	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	3830829	166903316	76296057	22	54388										
SACM1L	0	genome.wustl.edu	37	chr3	45746631	45746631	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttcctttcttttaaagtcaaGaaagatgttcctccttcagc	5	10	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	45746631	45746631	G	C	SNP	SACM1L	ENST00000389061	human	ensembl	69_37n	1	known	missense	c.135	p.K45N	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	SACM1L	HGNC	ENSG00000211456	150	0	0	98	28	22.22	-	-	-	C	45746631	G	C	45746631	3	2	628	1	0	0	0	0	1	0	0	0	13889	933	33	2	145	2	SACM1L	3	45746631	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		45746631	152275799	23	54389										
SETD2	0	genome.wustl.edu	37	chr3	47058665	47058665	+	Frame_Shift_Del	DEL	T	T	-													0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	taatgtactccttggttttgTgtttcacattctcattgcac							TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	47058665	47058665	T	-	DEL	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	frame_shift_del	c.7613	p.H2538fs	1.000	pfam_SRI	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	602	0	0	338	102	22.47	-	-	-	-	47058665	T	-	47058665	7	5	628	1	0	1	0	1	0	0	0	0	14219	1696	59	0	85	0	SETD2	3	47058665	Frame_Shift_Del	DEL	T	TCGA-C8-A12P-01A-11D-A10Y-09	1312034	47058665	150963765	24	54390										
PLXNA1	0	genome.wustl.edu	37	chr3	126707486	126707488	+	In_Frame_Del	DEL	TGC	TGC	-													0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gctcctgctgctgctgctgtTgctgctgctgctgccgggca							TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	126707486	126707488	TGC	-	DEL	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	in_frame_del	c.50_52	p.L21in_frame_del	0.001:0.000:0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	8	0	0	4	2	33.33	-	-	-	-	126707488	TGC	-	126707486	7	5	628	1	0	1	0	1	0	0	0	0	12193	1821	63	0	52	0	PLXNA1	3	126707486	In_Frame_Del	DEL	TGC	TCGA-C8-A12P-01A-11D-A10Y-09	79648821	126707486	71314944	25	54391										
SLCO2A1	0	genome.wustl.edu	37	chr3	133664066	133664066	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctgggcacgagcagtccctgCggcaggcaggagactgcgga	17	12	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	133664066	133664066	C	G	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.1334	p.R445P	0.069	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	94	0	0	45	12	21.05	-	-	-	G	133664066	C	G	133664066	3	3	628	1	0	0	0	0	1	0	0	0	14815	768	27	3	617	3	SLCO2A1	3	133664066	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	6956580	133664066	64358364	26	54392										
ESYT3	0	genome.wustl.edu	37	chr3	138180987	138180987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ccacctggtgctgcccaaccGtgtgactgtgcctgtgaaga	12	13	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	138180987	138180987	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	missense	c.854	p.R285H	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	253	0	0	120	24	16.67	-	-	-	A	138180987	G	A	138180987	3	1	628	1	0	0	0	0	1	0	0	0	5303	1145	40	1	884	1	ESYT3	3	138180987	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	4516921	138180987	59841443	27	54393										
TRIM42	0	genome.wustl.edu	37	chr3	140397118	140397118	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tccatgttgtacatggcagaGatgttgtcctcagttatgct	10	8	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	140397118	140397118	G	C	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.47	p.R16T	0.979	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	410	0	0	218	36	14.17	-	-	-	C	140397118	G	C	140397118	3	2	628	1	0	0	0	0	1	0	0	0	16613	942	33	2	49	2	TRIM42	3	140397118	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	2216131	140397118	57625312	28	54394										
HTR3D	0	genome.wustl.edu	37	chr3	183755826	183755826	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caggtggccatcaggcgcagGtgcaggcccagcccctacgt	14	15	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	3	183755826	183755826	G	A	SNP	HTR3D	ENST00000382489	human	ensembl	69_37n	1	known	silent	c.678	p.R226	0.999	superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	89	0	0	94	15	13.76	-	-	-	A	183755826	G	A	183755826	2	1	628	1	0	0	0	0	0	0	0	1	7501	1252	44	4		4	HTR3D	3	183755826	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	43358708	183755826	14266604	29	54395										
SULT1E1	0	genome.wustl.edu	37	chr4	70709918	70709918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caatttctggttcataatttCgtctggcagtgttgtgtaat	9	6	3	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	70709918	70709918	C	T	SNP	SULT1E1	ENST00000226444	human	ensembl	69_37n	-1	known	missense	c.733	p.E245K	0.005	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1E1	HGNC	ENSG00000109193	489	0	0	252	71	21.98	-	-	-	T	70709918	C	T	70709918	3	4	628	1	0	0	0	0	1	0	0	0	15471	893	31	1	159	1	SULT1E1	4	70709918	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		70709918	120444358	30	54396										
PTPN13	0	genome.wustl.edu	37	chr4	87696433	87696433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acgagttctagaattacccaGaataccaatgttgcctcatt	6	10	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	87696433	87696433	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.5633	p.R1878K	0.996	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	130	0	0	134	39	22.54	-	-	-	A	87696433	G	A	87696433	3	1	628	1	0	0	0	0	1	0	0	0	12863	942	33	2	5763	2	PTPN13	4	87696433	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	16986515	87696433	103457843	31	54397										
HERC6	0	genome.wustl.edu	37	chr4	89326043	89326043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgaaggatactagttccacaCgtgctcccgggaaaaccctg	10	12	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	89326043	89326043	C	T	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.1108	p.R370C	0.000	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	295	0	0	217	45	17.18	-	-	-	T	89326043	C	T	89326043	3	4	628	1	0	0	0	0	1	0	0	0	7113	536	19	1	939	1	HERC6	4	89326043	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1629610	89326043	101828233	32	54398										
PHF17	0	genome.wustl.edu	37	chr4	129770145	129770145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tattatccagggttgtgtctGaagagaaatccctcatgttc	9	8	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	129770145	129770145	G	A	SNP	PHF17	ENST00000226319	human	ensembl	69_37n	1	known	missense	c.307	p.E103K	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684	190	0	0	182	25	12.08	-	-	-	A	129770145	G	A	129770145	3	1	628	1	0	0	0	0	1	0	0	0	11902	1291	45	2	321	2	PHF17	4	129770145	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	40444102	129770145	61384131	33	54399										
PDGFC	0	genome.wustl.edu	37	chr4	157689125	157689125	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	taatcttacctcctctgttaGaaggttcagatccaccacta	5	12	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	157689125	157689125	G	A	SNP	PDGFC	ENST00000502773	human	ensembl	69_37n	-1	known	silent	c.721	p.L241	1.000	NULL	pfam_CUB,pfam_PD_growth_factor,superfamily_CUB,smart_CUB,smart_PD_growth_factor,pfscan_CUB,pfscan_PD_growth_factor	-	no_errors	PDGFC	HGNC	ENSG00000145431	167	0	0	106	30	22.06	-	-	-	A	157689125	G	A	157689125	2	1	628	1	0	0	0	0	0	0	0	1	11732	933	33	2		2	PDGFC	4	157689125	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	27918980	157689125	33465151	34	54400										
HAND2	0	genome.wustl.edu	37	chr4	174450130	174450130	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgcgccgctccttgcggttgGcggtgcctcggcgcttcacc	14	16	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	174450130	174450130	G	T	SNP	HAND2	ENST00000359562	human	ensembl	69_37n	-1	known	missense	c.311	p.A104D	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	HAND2	HGNC	ENSG00000164107	82	0	0	85	14	14.14	-	-	-	T	174450130	G	T	174450130	3	4	628	1	0	0	0	0	1	0	0	0	7001	1203	42	4	350	4	HAND2	4	174450130	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	16761005	174450130	16704146	35	54401										
WDR17	0	genome.wustl.edu	37	chr4	177046468	177046468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	agcttctgtacagtgcttagCctgggttcccagtgctcctg	11	12	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	4	177046468	177046468	C	T	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.824	p.A275V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	244	0	0	158	43	21.39	-	-	-	T	177046468	C	T	177046468	3	4	628	1	0	0	0	0	1	0	0	0	17374	739	26	4	842	4	WDR17	4	177046468	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	2596338	177046468	14107808	36	54402										
LRRC14B	0	genome.wustl.edu	37	chr5	192381	192381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gggcttcccccggctggcctCgctcaccctgcccaccaagg	11	20	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	192381	192381	C	T	SNP	LRRC14B	ENST00000328278	human	ensembl	69_37n	1	novel	missense	c.728	p.S243L	0.091	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	15	0	0	34	10	22.73	-	-	-	T	192381	C	T	192381	3	4	628	1	0	0	0	0	1	0	0	0	9035	893	31	1	730	1	LRRC14B	5	192381	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		192381	180722879	37	54403										
PRKAA1	0	genome.wustl.edu	37	chr5	40798178	40798178	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttctcacccttcactttgccGaaggtgccgacccccagcgt	8	17	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	40798178	40798178	G	A	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	silent	c.114	p.F38	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	88	0	0	58	17	22.67	-	-	-	A	40798178	G	A	40798178	2	1	628	1	0	0	0	0	0	0	0	1	12574	1049	37	1		1	PRKAA1	5	40798178	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	40605797	40798178	140117082	38	54404										
C7	0	genome.wustl.edu	37	chr5	40959700	40959700	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cagaaagcacacaatgcgaaGatgaggagctggagcacttg	13	8	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	40959700	40959700	G	C	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.1639	p.D547H	1.000	pfam_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	148	0	0	177	25	12.38	-	-	-	C	40959700	G	C	40959700	3	2	628	1	0	0	0	0	1	0	0	0	2398	942	33	2	1685	2	C7	5	40959700	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	161522	40959700	139955560	39	54405										
VCAN	0	genome.wustl.edu	37	chr5	82833462	82833462	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atctctgtttcctgaagagtCttcaggagagattgccattg	10	8	3	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	82833462	82833462	C	G	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.4640	p.S1547C	0.889	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	127	0	0	109	25	18.66	-	-	-	G	82833462	C	G	82833462	3	3	628	1	0	0	0	0	1	0	0	0	17235	913	32	2	4666	2	VCAN	5	82833462	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	41873762	82833462	98081798	40	54406										
RASA1	0	genome.wustl.edu	37	chr5	86633865	86633865	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtgggttacaaatttaagaaCagatgaacaaggccttattg	10	5	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	86633865	86633865	C	G	SNP	RASA1	ENST00000274376	human	ensembl	69_37n	1	known	missense	c.974	p.T325R	1.000	pfam_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715	243	0	0	257	61	19.18	-	-	-	G	86633865	C	G	86633865	3	3	628	1	0	0	0	0	1	0	0	0	13143	478	17	4	1004	4	RASA1	5	86633865	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	3800403	86633865	94281395	41	54407										
PJA2	0	genome.wustl.edu	37	chr5	108714379	108714379	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tttcctggctagtattatttTgttgtttcgtactaaccatt	6	7	0	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	108714379	108714379	T	A	SNP	PJA2	ENST00000361189	human	ensembl	69_37n	-1	known	missense	c.809	p.Q270L	0.690	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	347	0	0	224	52	18.84	-	-	-	A	108714379	T	A	108714379	3	1	628	1	0	0	0	0	1	0	0	0	12036	1812	63	5	1345	5	PJA2	5	108714379	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	22080514	108714379	72200881	42	54408										
PCDHGA6	0	genome.wustl.edu	37	chr5	140755127	140755127	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aagtctcctactcactggcaGaagacaccctccagggggcg	11	14	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	5	140755127	140755127	G	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	nonsense	c.1477	p.E493*	0.117	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	81	0	0	61	21	25.61	-	-	-	T	140755127	G	T	140755127	4	4	628	1	0	0	0	0	0	1	0	0	11631	943	33	2	1479	2	PCDHGA6	5	140755127	Nonsense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	32040748	140755127	40160133	43	54409										
NUP153	0	genome.wustl.edu	37	chr6	17637836	17637836	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atttgttgtctgtaactttgTtctggagtagacatgtatca	9	5	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	17637836	17637836	T	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.2105	p.N702I	1.000	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	330	0	0	427	50	10.48	-	-	-	A	17637836	T	A	17637836	3	1	628	1	0	0	0	0	1	0	0	0	10828	1725	60	5	2443	5	NUP153	6	17637836	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09		17637836	153477231	44	54410										
BTN2A2	0	genome.wustl.edu	37	chr6	26388255	26388255	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttccaggccttgggtctaagCccctcattgaaatcaaggcc	9	13	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	26388255	26388255	C	A	SNP	BTN2A2	ENST00000356709	human	ensembl	69_37n	1	known	missense	c.457	p.P153T	0.054	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTN2A2	HGNC	ENSG00000124508	127	1	0.78	114	17	12.88	-	-	-	A	26388255	C	A	26388255	3	1	628	1	0	0	0	0	1	0	0	0	1570	739	26	4	467	4	BTN2A2	6	26388255	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	8750419	26388255	144726812	45	54411										
OR2B2	0	genome.wustl.edu	37	chr6	27879467	27879467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cgatataaggatgagtgtcaCgggtattagaaggaatagca	13	4	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	27879467	27879467	C	T	SNP	OR2B2	ENST00000303324	human	ensembl	69_37n	-1	known	missense	c.631	p.V211M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131	208	0	0	83	21	20.19	-	-	-	T	27879467	C	T	27879467	3	4	628	1	0	0	0	0	1	0	0	0	11062	536	19	1	446	1	OR2B2	6	27879467	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1491212	27879467	143235600	46	54412										
CD109	0	genome.wustl.edu	37	chr6	74473391	74473391	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctactgtcttgaagccatctCtcaacttcacagccactgta	5	14	4	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	74473391	74473391	C	G	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.1090	p.L364V	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	208	0	0	95	46	32.62	-	-	-	G	74473391	C	G	74473391	3	3	628	1	0	0	0	0	1	0	0	0	2992	913	32	2	1128	2	CD109	6	74473391	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	46593924	74473391	96641676	47	54413										
L3MBTL3	0	genome.wustl.edu	37	chr6	130370912	130370912	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	catctccagccccgacctctCccccgagctccaggcccgta	7	22	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	130370912	130370912	C	G	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.226	p.P76A	1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	147	0	0	101	30	22.9	-	-	-	G	130370912	C	G	130370912	3	3	628	1	0	0	0	0	1	0	0	0	8647	855	30	2	236	2	L3MBTL3	6	130370912	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	55897521	130370912	40744155	48	54414										
ALDH8A1	0	genome.wustl.edu	37	chr6	135239645	135239645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tccagaactcttcatcccccCgaaaggaaggttcagctccc	7	16	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	135239645	135239645	C	T	SNP	ALDH8A1	ENST00000265605	human	ensembl	69_37n	-1	known	missense	c.1372	p.G458R	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514	182	0	0	124	31	20	-	-	-	T	135239645	C	T	135239645	3	4	628	1	0	0	0	0	1	0	0	0	505	652	23	1	95	1	ALDH8A1	6	135239645	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	4868733	135239645	35875422	49	54415										
PDE10A	0	genome.wustl.edu	37	chr6	165863749	165863749	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cctattttaatgatgctgctCagttcatagaggagtagctg	10	7	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	6	165863749	165863749	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	silent	c.327	p.L109	0.987	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	257	0	0	194	45	18.83	-	-	-	T	165863749	C	T	165863749	2	4	628	1	0	0	0	0	0	0	0	1	11703	813	29	2		2	PDE10A	6	165863749	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	30624104	165863749	5251318	50	54416										
ICA1	0	genome.wustl.edu	37	chr7	8167561	8167561	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aaaagctgcgaaggaaggaaAcctgagcctgtctgggcctt	13	9	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	8167561	8167561	A	G	SNP	ICA1	ENST00000422063	human	ensembl	69_37n	-1	known	silent	c.1359	p.G453	0.000	pfam_Islet_autoAg_Ica1_C	pfam_Arfaptin_homology_dom,pfam_Islet_autoAg_Ica1_C,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	137	1	0.71	152	20	11.43	-	-	-	G	8167561	A	G	8167561	2	3	628	1	0	0	0	0	0	0	0	1	7531	30	2	5		5	ICA1	7	8167561	Silent	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09		8167561	150971102	51	54417										
INMT	0	genome.wustl.edu	37	chr7	30793370	30793370	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gcctccaaggggacacgctgAttgacattggctcaggtcct	12	12	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	30793370	30793370	A	T	SNP	INMT	ENST00000013222	human	ensembl	69_37n	1	known	missense	c.178	p.I60F	0.998	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644	95	0	0	92	19	16.96	-	-	-	T	30793370	A	T	30793370	3	4	628	1	0	0	0	0	1	0	0	0	7799	333	12	5	184	5	INMT	7	30793370	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	22625809	30793370	128345293	52	54418										
AVL9	0	genome.wustl.edu	37	chr7	32598959	32598959	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aaggactctgtcccctcagaGagtcttccaattactgtaca	7	12	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	32598959	32598959	G	C	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	missense	c.1098	p.E366D	0.891	pfam_Secretory_pathway_prot_Avl9	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	22	0	0	33	9	21.43	-	-	-	C	32598959	G	C	32598959	3	2	628	1	0	0	0	0	1	0	0	0	1232	933	33	2	1136	2	AVL9	7	32598959	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	1805589	32598959	126539704	53	54419										
BBS9	0	genome.wustl.edu	37	chr7	33388717	33388717	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	agtgatattgcaaaaagccaAattatcagtctacgtgcaac	7	8	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	33388717	33388717	A	C	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.1367	p.K456T	0.267	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	241	0	0	282	37	11.6	-	-	-	C	33388717	A	C	33388717	3	2	628	1	0	0	0	0	1	0	0	0	1346	14	1	5	1413	5	BBS9	7	33388717	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	789758	33388717	125749946	54	54420										
POU6F2	0	genome.wustl.edu	37	chr7	39503976	39503976	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gctgaggctgaggcccgccaTcgagcaggtatgcagaacct	14	12	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	39503976	39503976	T	C	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	silent	c.1767	p.H589	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	93	0	0	139	18	11.46	-	-	-	C	39503976	T	C	39503976	2	2	628	1	0	0	0	0	0	0	0	1	12358	1432	50	5		5	POU6F2	7	39503976	Silent	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	6115259	39503976	119634687	55	54421										
GRB10	0	genome.wustl.edu	37	chr7	50680488	50680488	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cgtcctggtttgctcgtcctCtgcacagagcaacctcagct	9	15	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	50680488	50680488	C	T	SNP	GRB10	ENST00000398812	human	ensembl	69_37n	-1	known	missense	c.1144	p.E382K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070	320	0	0	247	44	15.12	-	-	-	T	50680488	C	T	50680488	3	4	628	1	0	0	0	0	1	0	0	0	6807	922	32	2	668	2	GRB10	7	50680488	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11176512	50680488	108458175	56	54422										
TBL2	0	genome.wustl.edu	37	chr7	72984983	72984983	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tcggtggccaggagtgttgtGaaacagccgcaccgcccggt	15	12	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	72984983	72984983	G	C	SNP	TBL2	ENST00000305632	human	ensembl	69_37n	-1	known	missense	c.1198	p.H400D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638	36	0	0	44	6	11.76	-	-	-	C	72984983	G	C	72984983	3	2	628	1	0	0	0	0	1	0	0	0	15737	1290	45	2	149	2	TBL2	7	72984983	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	22304495	72984983	86153680	57	54423										
ABCB1	0	genome.wustl.edu	37	chr7	87225124	87225124	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtttcttttccttcttatcTttttcactgcaaaacagcaa	4	10	4	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	87225124	87225124	T	C	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.75	p.K25	0.998	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	112	0	0	148	25	14.45	-	-	-	C	87225124	T	C	87225124	2	2	628	1	0	0	0	0	0	0	0	1	40	1606	56	5		5	ABCB1	7	87225124	Silent	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	14240141	87225124	71913539	58	54424										
ZAN	0	genome.wustl.edu	37	chr7	100382296	100382296	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caactgccttccctcctgctCaccctcctgctgggacctgg	8	19	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	100382296	100382296	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.6671	p.S2224L	0.141	pfam_TIL_dom,superfamily_TIL_dom,smart_EGF-like	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	145	0	0	103	12	10.43	-	-	-	T	100382296	C	T	100382296	3	4	628	1	0	0	0	0	1	0	0	0	17610	838	29	2	6811	2	ZAN	7	100382296	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	13157172	100382296	58756367	59	54425										
LAMB1	0	genome.wustl.edu	37	chr7	107601001	107601001	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctctagacatcggtatctctGaaaggtttcccaggcactgt	9	11	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	107601001	107601001	G	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.2203	p.Q735K	1.000	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	162	0	0	122	26	17.57	-	-	-	T	107601001	G	T	107601001	3	4	628	1	0	0	0	0	1	0	0	0	8664	1299	45	2	3225	2	LAMB1	7	107601001	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	7218705	107601001	51537662	60	54426										
FLNC	0	genome.wustl.edu	37	chr7	128480154	128480154	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gcgtgaaagaggtggctgacTtcaaggtgtttaccaagggt	15	6	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	128480154	128480154	T	C	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.1489	p.F497L	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	168	1	0.59	154	26	14.44	-	-	-	C	128480154	T	C	128480154	3	2	628	1	0	0	0	0	1	0	0	0	5981	1609	56	5	1523	5	FLNC	7	128480154	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	20879153	128480154	30658509	61	54427										
MKRN1	0	genome.wustl.edu	37	chr7	140154430	140154430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caaaagcataagcaacatctCgcccagctcaaaggtgacaa	7	12	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	140154430	140154430	C	T	SNP	MKRN1	ENST00000255977	human	ensembl	69_37n	-1	known	missense	c.1336	p.E446K	1.000	NULL	pfam_Znf_CCCH,pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN1	HGNC	ENSG00000133606	406	0	0	277	58	17.31	-	-	-	T	140154430	C	T	140154430	3	4	628	1	0	0	0	0	1	0	0	0	9677	893	31	1	116	1	MKRN1	7	140154430	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11674276	140154430	18984233	62	54428										
BRAF	0	genome.wustl.edu	37	chr7	140500217	140500217	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tccagatgttagggcagtctCtgctaaggacgcctcttcct	10	12	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	140500217	140500217	C	A	SNP	BRAF	ENST00000288602	human	ensembl	69_37n	-1	known	nonsense	c.925	p.E309*	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	119	0	0	89	15	14.42	-	-	-	A	140500217	C	A	140500217	4	1	628	1	0	0	0	0	0	1	0	0	1504	922	32	2	1423	2	BRAF	7	140500217	Nonsense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	345787	140500217	18638446	63	54429										
RNF32	0	genome.wustl.edu	37	chr7	156437412	156437412	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aactagaagactcagaaaaaGaatatgttcttgatcccaaa	6	7	2	5			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	7	156437412	156437412	G	C	SNP	RNF32	ENST00000317955	human	ensembl	69_37n	1	known	missense	c.235	p.E79Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982	60	0	0	96	17	14.91	-	-	-	C	156437412	G	C	156437412	3	2	628	1	0	0	0	0	1	0	0	0	13574	943	33	2	241	2	RNF32	7	156437412	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	15937195	156437412	2701251	64	54430										
MTMR9	0	genome.wustl.edu	37	chr8	11180245	11180245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	agcaaaagtcaatatccttcGaaggcagttggcagaactgg	11	8	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	11180245	11180245	G	A	SNP	MTMR9	ENST00000221086	human	ensembl	69_37n	1	known	missense	c.1598	p.R533Q	0.991	NULL	pfam_Myotub-related	-	no_errors	MTMR9	HGNC	ENSG00000104643	148	1	0.67	79	26	24.76	-	-	-	A	11180245	G	A	11180245	3	1	628	1	0	0	0	0	1	0	0	0	10022	1058	37	1	1636	1	MTMR9	8	11180245	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		11180245	135183777	65	54431										
POTEA	0	genome.wustl.edu	37	chr8	43211970	43211970	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acttactagaactcaaaaatAgccactatgagcaacttaca	4	10	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	43211970	43211970	A	C	SNP	POTEA	ENST00000522175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	118	0	0	61	103	62.8	-	-	-	C	43211970	A	C	43211970	1	2	628	0	1	0	0	0	0	0	0	0	12335	420	15	5		5	POTEA	8	43211970	RNA	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	32031725	43211970	103152052	66	54432										
TOX	0	genome.wustl.edu	37	chr8	59764365	59764365	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gggtttcgtatatctggcatCtacaataaataaataaataa	6	5	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	59764365	59764365	C	G	SNP	TOX	ENST00000361421	human	ensembl	69_37n	-1	known	splice_site	c.412-1	e4-1	1.000	-	-	-	no_errors	TOX	HGNC	ENSG00000198846	31	0	0	38	6	13.64	-	-	-	G	59764365	C	G	59764365	5	3	628	1	0	0	0	0	0	0	1	0	16473	927	32	2	1193	2	TOX	8	59764365	Splice_Site	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	16552395	59764365	86599657	67	54433										
PREX2	0	genome.wustl.edu	37	chr8	69017562	69017562	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttcctgaggaccttccttctCaagaaatgctcttagcagag	8	11	2	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	69017562	69017562	C	G	SNP	PREX2	ENST00000529398	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	PREX2	HGNC	ENSG00000046889	93	0	0	87	19	17.92	-	-	-	G	69017562	C	G	69017562	1	3	628	0	1	0	0	0	0	0	0	0	12558	827	29	2		2	PREX2	8	69017562	RNA	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	9253197	69017562	77346460	68	54434										
LY96	0	genome.wustl.edu	37	chr8	74939031	74939031	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	attttgtttgcagagactgtGaatacaacaatatcattctc	6	7	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	74939031	74939031	G	A	SNP	LY96	ENST00000284818	human	ensembl	69_37n	1	known	silent	c.339	p.V113	0.506	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	-	no_errors	LY96	HGNC	ENSG00000154589	172	0	0	116	34	22.67	-	-	-	A	74939031	G	A	74939031	2	1	628	1	0	0	0	0	0	0	0	1	9169	1277	45	2		2	LY96	8	74939031	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	5921469	74939031	71424991	69	54435										
SLC25A32	0	genome.wustl.edu	37	chr8	104419920	104419920	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tatatttggggttactccttGataaagtccccgtagtccat	8	9	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	104419920	104419920	G	C	SNP	SLC25A32	ENST00000297578	human	ensembl	69_37n	-1	known	missense	c.247	p.Q83E	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A32	HGNC	ENSG00000164933	201	0	0	184	74	28.68	-	-	-	C	104419920	G	C	104419920	3	2	628	1	0	0	0	0	1	0	0	0	14585	1299	45	2	724	2	SLC25A32	8	104419920	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	29480889	104419920	41944102	70	54436										
PKHD1L1	0	genome.wustl.edu	37	chr8	110463293	110463294	+	Frame_Shift_Del	DEL	CT	CT	-													0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cgtttacgtacgcagtgtcaCtgactccactcatcactgca							TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	110463293	110463294	CT	-	DEL	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	frame_shift_del	c.6265_6266	p.L2089fs	0.734:0.995	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	127	0	0	59	283	79.05	-	-	-	-	110463294	CT	-	110463293	7	5	628	1	0	1	0	1	0	0	0	0	12046	564	20	0	6427	0	PKHD1L1	8	110463293	Frame_Shift_Del	DEL	CT	TCGA-C8-A12P-01A-11D-A10Y-09	6043373	110463293	35900729	71	54437										
CSMD3	0	genome.wustl.edu	37	chr8	113314091	113314091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ccttacagcagagcccacaaGcatgaatcccaagtcgcagg	9	14	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	113314091	113314091	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.8371	p.L2791F	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	180	0	0	338	43	11.29	-	-	-	A	113314091	G	A	113314091	3	1	628	1	0	0	0	0	1	0	0	0	3978	971	34	4	2828	4	CSMD3	8	113314091	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	2850798	113314091	33049931	72	54438										
CYP11B2	0	genome.wustl.edu	37	chr8	143993470	143993470	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gctgtagaccatctttatgtCctcttgagttagtgtctcca	8	10	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	8	143993470	143993470	C	A	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1438	p.D480Y	0.972	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	290	0	0	152	528	77.53	-	-	-	A	143993470	C	A	143993470	3	1	628	1	0	0	0	0	1	0	0	0	4177	855	30	2	77	2	CYP11B2	8	143993470	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	30679379	143993470	2370552	73	54439										
RPS6	0	genome.wustl.edu	37	chr9	19378776	19378776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caaccacgaactgattttctCtttctttctccagttctcct	3	14	4	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	19378776	19378776	C	G	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	missense	c.279	p.K93N	1.000	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	88	0	0	63	12	16	-	-	-	G	19378776	C	G	19378776	3	3	628	1	0	0	0	0	1	0	0	0	13735	912	32	2	486	2	RPS6	9	19378776	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		19378776	121834655	74	54440										
DDX58	0	genome.wustl.edu	37	chr9	32491384	32491384	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atgtcagaagtttccatcttAtcctcaagatcttctgtttc	5	10	5	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	32491384	32491384	A	G	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	silent	c.606	p.D202	0.000	NULL	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	156	0	0	91	28	23.33	-	-	-	G	32491384	A	G	32491384	2	3	628	1	0	0	0	0	0	0	0	1	4406	446	16	5		5	DDX58	9	32491384	Silent	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	13112608	32491384	108722047	75	54441										
UBAP2	0	genome.wustl.edu	37	chr9	33944419	33944419	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gatgtgtttgggctgtggctGgtggacagacacagagatat	16	5	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	33944419	33944419	G	A	SNP	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	nonsense	c.1489	p.Q497*	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	192	0	0	250	37	12.89	-	-	-	A	33944419	G	A	33944419	4	1	628	1	0	0	0	0	0	1	0	0	16934	1357	47	4	1934	4	UBAP2	9	33944419	Nonsense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	1453035	33944419	107269012	76	54442										
TLN1	0	genome.wustl.edu	37	chr9	35711069	35711069	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gatgagctgattgatgctgtCagttactgccctgggagtga	14	7	1	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	35711069	35711069	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.4030	p.D1344N	1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	289	1	0.34	258	45	14.85	-	-	-	T	35711069	C	T	35711069	3	4	628	1	0	0	0	0	1	0	0	0	16042	826	29	2	3703	2	TLN1	9	35711069	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1766650	35711069	105502362	77	54443										
ECM2	0	genome.wustl.edu	37	chr9	95263288	95263288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aggacttgggtagataggacGggacgtgatagagcttgttg	17	4	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	95263288	95263288	G	A	SNP	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	missense	c.1652	p.P551L	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	247	1	0.4	178	47	20.89	-	-	-	A	95263288	G	A	95263288	3	1	628	1	0	0	0	0	1	0	0	0	4933	1116	39	1	455	1	ECM2	9	95263288	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	59552219	95263288	45950143	78	54444										
WDR31	0	genome.wustl.edu	37	chr9	116094279	116094279	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttctgtggaggagcttgtttCagttggcacctgagtagcag	14	7	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	116094279	116094279	C	T	SNP	WDR31	ENST00000374193	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR31	HGNC	ENSG00000148225	260	0	0	103	98	48.76	-	-	-	T	116094279	C	T	116094279	2	4	628	1	0	0	0	0	0	0	0	1	17383	813	29	2		2	WDR31	9	116094279	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	20830991	116094279	25119152	79	54445										
TTC16	0	genome.wustl.edu	37	chr9	130486524	130486524	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acagcgccagctgttgctgaCctacaacgactttgccgtgc	10	14	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	130486524	130486524	C	G	SNP	TTC16	ENST00000373289	human	ensembl	69_37n	1	known	missense	c.998	p.T333S	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094	35	0	0	21	5	19.23	-	-	-	G	130486524	C	G	130486524	3	3	628	1	0	0	0	0	1	0	0	0	16780	507	18	4	1028	4	TTC16	9	130486524	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	14392245	130486524	10726907	80	54446										
SURF2	0	genome.wustl.edu	37	chr9	136227991	136227991	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caccgcaaacccaagagcttCagctcctgtaaacagccagg	8	15	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	9	136227991	136227991	C	T	SNP	SURF2	ENST00000371964	human	ensembl	69_37n	1	known	silent	c.747	p.F249	0.184	pfam_Surf2	pfam_Surf2	-	no_errors	SURF2	HGNC	ENSG00000148291	134	0	0	65	47	41.96	-	-	-	T	136227991	C	T	136227991	2	4	628	1	0	0	0	0	0	0	0	1	15495	825	29	2		2	SURF2	9	136227991	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	5741467	136227991	4985440	81	54447										
ITIH5	0	genome.wustl.edu	37	chr10	7621758	7621758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtcctcctcctcgtgcacgcGccgtgtgaggccacagttct	11	16	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	10	7621758	7621758	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	69_37n	-1	known	missense	c.1378	p.R460C	0.734	smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	121	0	0	117	15	11.36	-	-	-	A	7621758	G	A	7621758	3	1	628	1	0	0	0	0	1	0	0	0	7961	1087	38	1	1597	1	ITIH5	10	7621758	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		7621758	127912989	82	54448										
QSER1	0	genome.wustl.edu	37	chr11	32955856	32955856	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aagatggtgattctaaatctCattttcagcagtcattagat	7	6	4	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	32955856	32955856	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.2665	p.H889D	0.998	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	100	0	0	65	17	20.73	-	-	-	G	32955856	C	G	32955856	3	3	628	1	0	0	0	0	1	0	0	0	12965	826	29	2	2671	2	QSER1	11	32955856	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		32955856	102050660	83	54449										
LRP4	0	genome.wustl.edu	37	chr11	46889599	46889599	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acaaggtggtaggtggtgtgTtgggtagcactgggctcttt	17	5	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	46889599	46889599	T	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.5018	p.N1673S	1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	304	0	0	182	51	21.89	-	-	-	C	46889599	T	C	46889599	3	2	628	1	0	0	0	0	1	0	0	0	9025	1725	60	5	719	5	LRP4	11	46889599	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	13933743	46889599	88116917	84	54450										
OR4C12	0	genome.wustl.edu	37	chr11	50003262	50003262	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caatgggcagagtggtcactGagcgcagatacacaaatata	11	8	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	50003262	50003262	G	A	SNP	OR4C12	ENST00000335238	human	ensembl	69_37n	-1	known	missense	c.776	p.S259L	0.170	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C12	HGNC	ENSG00000221954	129	0	0	183	32	14.88	-	-	-	A	50003262	G	A	50003262	3	1	628	1	0	0	0	0	1	0	0	0	11119	1294	45	2	157	2	OR4C12	11	50003262	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	3113663	50003262	85003254	85	54451										
PRG2	0	genome.wustl.edu	37	chr11	57156722	57156722	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtctcctccatctcctgctCtggtgtctcctcatcctcag	7	17	6	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	57156722	57156722	C	T	SNP	PRG2	ENST00000311862	human	ensembl	69_37n	-1	known	missense	c.127	p.E43K	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG2	HGNC	ENSG00000186652	124	0	0	108	42	28	-	-	-	T	57156722	C	T	57156722	3	4	628	1	0	0	0	0	1	0	0	0	12560	922	32	2	557	2	PRG2	11	57156722	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	7153460	57156722	77849794	86	54452										
OR5B17	0	genome.wustl.edu	37	chr11	58126186	58126186	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttacacactgctgcgtagcgGtcataggccattgaggacaa	11	10	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	58126186	58126186	G	A	SNP	OR5B17	ENST00000357377	human	ensembl	69_37n	-1	known	silent	c.357	p.D119	0.991	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786	231	0	0	151	55	26.57	-	-	-	A	58126186	G	A	58126186	2	1	628	1	0	0	0	0	0	0	0	1	11222	1252	44	4		4	OR5B17	11	58126186	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	969464	58126186	76880330	87	54453										
FAM111B	0	genome.wustl.edu	37	chr11	58892505	58892506	+	Frame_Shift_Del	DEL	GA	GA	-													0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ccacaaaccaaagaaagatgGagagaccaaagatgtagaac							TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	58892505	58892506	GA	-	DEL	FAM111B	ENST00000343597	human	ensembl	69_37n	1	known	frame_shift_del	c.935_936	p.E313fs	0.000:0.000	NULL	superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111B	HGNC	ENSG00000189057	36	0	0	110	15	12	-	-	-	-	58892506	GA	-	58892505	7	5	628	1	0	1	0	1	0	0	0	0	5440	1174	41	0	941	0	FAM111B	11	58892505	Frame_Shift_Del	DEL	GA	TCGA-C8-A12P-01A-11D-A10Y-09	766319	58892505	76114011	88	54454										
DLG2	0	genome.wustl.edu	37	chr11	83984277	83984277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aagctgataattctcagcccGagaaacacttggccgttgca	9	11	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	11	83984277	83984277	G	A	SNP	DLG2	ENST00000418306	human	ensembl	69_37n	-1	known	missense	c.22	p.R8W	0.996	pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	63	0	0	73	17	18.89	-	-	-	A	83984277	G	A	83984277	3	1	628	1	0	0	0	0	1	0	0	0	4591	1057	37	1	2629	1	DLG2	11	83984277	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	25091772	83984277	51022239	89	54455										
PZP	0	genome.wustl.edu	37	chr12	9317892	9317892	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtccagcatcttcggacaggCagaaggcccctgccttccac	10	16	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	9317892	9317892	C	G	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.2330	p.C777S	1.000	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	108	0	0	130	22	14.47	-	-	-	G	9317892	C	G	9317892	3	3	628	1	0	0	0	0	1	0	0	0	12952	710	25	4	2190	4	PZP	12	9317892	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		9317892	124534003	90	54456										
TAS2R50	0	genome.wustl.edu	37	chr12	11138561	11138561	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	agagtttcaggtcttttactCagcacctaatctgacacaaa	6	10	4	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	11138561	11138561	C	T	SNP	TAS2R50	ENST00000506868	human	ensembl	69_37n	-1	known	silent	c.899	p.*300	0.001	NULL	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126	67	0	0	104	17	14.05	-	-	-	T	11138561	C	T	11138561	2	4	628	1	0	0	0	0	0	0	0	1	15676	837	29	2		2	TAS2R50	12	11138561	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1820669	11138561	122713334	91	54457										
C12orf77	0	genome.wustl.edu	37	chr12	25148864	25148864	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttggaaaagctgtttcagtaGagatggcatatttctggtgg	13	4	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	25148864	25148864	G	A	SNP	C12orf77	ENST00000549828	human	ensembl	69_37n	-1	known	missense	c.284	p.S95F	0.000	NULL	NULL	-	no_errors	C12orf77	HGNC	ENSG00000226397	229	1	0.43	158	42	21	-	-	-	A	25148864	G	A	25148864	3	1	628	1	0	0	0	0	1	0	0	0	1728	942	33	2	161	2	C12orf77	12	25148864	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	14010303	25148864	108703031	92	54458										
LIMA1	0	genome.wustl.edu	37	chr12	50571543	50571543	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gggggtggccaggcgatcctCagcttcttggtttcagctgg	16	10	3	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	50571543	50571543	C	A	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	194	0	0	131	29	18.12	-	-	-	A	50571543	C	A	50571543	2	1	628	1	0	0	0	0	0	0	0	1	8851	813	29	2		2	LIMA1	12	50571543	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	25422679	50571543	83280352	93	54459										
DNAJC14	0	genome.wustl.edu	37	chr12	56221462	56221462	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gccaggagcagcaaagcaccCagcagcttaagaaaacgagt	11	11	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	56221462	56221462	C	T	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	silent	c.981	p.L327	0.997	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	70	0	0	92	21	18.58	-	-	-	T	56221462	C	T	56221462	2	4	628	1	0	0	0	0	0	0	0	1	4668	581	21	4		4	DNAJC14	12	56221462	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	5649919	56221462	77630433	94	54460										
LRP1	0	genome.wustl.edu	37	chr12	57532316	57532316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tctcaaagggctggcggtgcGacggtgagagggactgccca	17	10	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	57532316	57532316	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.142	p.D48N	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	237	0	0	179	43	19.37	-	-	-	A	57532316	G	A	57532316	3	1	628	1	0	0	0	0	1	0	0	0	9017	1058	37	1	148	1	LRP1	12	57532316	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	1310854	57532316	76319579	95	54461										
DEPDC4	0	genome.wustl.edu	37	chr12	100660851	100660851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cgctggctcctcccctggcaCcatagccccgccccacctga	8	22	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	12	100660851	100660851	C	T	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	missense	c.4	p.V2M	0.001	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	41	0	0	28	11	28.21	-	-	-	T	100660851	C	T	100660851	3	4	628	1	0	0	0	0	1	0	0	0	4477	507	18	4	900	4	DEPDC4	12	100660851	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	43128535	100660851	33191044	96	54462										
PCID2	0	genome.wustl.edu	37	chr13	113851339	113851339	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctaaatttaagtacccaagtGaaagagctgaaacgagcttc	8	8	0	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	13	113851339	113851339	G	A	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	missense	c.419	p.S140L	0.000	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	91	0	0	51	14	21.54	-	-	-	A	113851339	G	A	113851339	3	1	628	1	0	0	0	0	1	0	0	0	11652	1305	45	2		2	PCID2	13	113851339	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		113851339	1318539	97	54463										
RNASE3	0	genome.wustl.edu	37	chr14	21360155	21360155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	attgtcatcggagtagattcCgggtgcctttactccactgt	10	10	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	21360155	21360155	C	T	SNP	RNASE3	ENST00000304639	human	ensembl	69_37n	1	known	missense	c.310	p.R104W	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE3	HGNC	ENSG00000169397	180	0	0	145	46	24.08	-	-	-	T	21360155	C	T	21360155	3	4	628	1	0	0	0	0	1	0	0	0	13491	643	23	1	312	1	RNASE3	14	21360155	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		21360155	85989385	98	54464										
AKAP6	0	genome.wustl.edu	37	chr14	33293371	33293371	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cgtacttatctctctcatctCatgacagtgattgtggggag	10	9	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	33293371	33293371	C	G	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.6352	p.H2118D	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	131	0	0	100	23	18.7	-	-	-	G	33293371	C	G	33293371	3	3	628	1	0	0	0	0	1	0	0	0	455	826	29	2	6398	2	AKAP6	14	33293371	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11933216	33293371	74056169	99	54465										
TRIM9	0	genome.wustl.edu	37	chr14	51448553	51448553	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttgttgtgcatgaaccagctCcggttattgtccacatacat	8	10	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	51448553	51448553	C	G	SNP	TRIM9	ENST00000338969	human	ensembl	69_37n	-1	known	silent	c.2115	p.R705	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	407	0	0	305	78	20.37	-	-	-	G	51448553	C	G	51448553	2	3	628	1	0	0	0	0	0	0	0	1	16645	842	30	2		2	TRIM9	14	51448553	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	18155182	51448553	55900987	100	54466										
STYX	0	genome.wustl.edu	37	chr14	53211599	53211599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	taccctatgagacgagagatGcaggtatggcaaccttttct	10	9	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	53211599	53211599	G	A	SNP	STYX	ENST00000354586	human	ensembl	69_37n	1	known	missense	c.87	p.M29I	1.000	smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYX	HGNC	ENSG00000198252	322	0	0	269	64	19.22	-	-	-	A	53211599	G	A	53211599	3	1	628	1	0	0	0	0	1	0	0	0	15451	1319	46	4	93	4	STYX	14	53211599	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	1763046	53211599	54137941	101	54467										
SYNE2	0	genome.wustl.edu	37	chr14	64600841	64600841	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttgaaaaggacctggaaattCttatatctacattgccctct	6	9	3	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	64600841	64600841	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.14569	p.L4857F	0.998	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	184	0	0	242	47	16.26	-	-	-	T	64600841	C	T	64600841	3	4	628	1	0	0	0	0	1	0	0	0	15538	913	32	2	14875	2	SYNE2	14	64600841	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11389242	64600841	42748699	102	54468										
BTBD7	0	genome.wustl.edu	37	chr14	93723687	93723687	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cacactatgggcagtgccacTcagtaagtttggctctatga	10	10	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	93723687	93723687	T	G	SNP	BTBD7	ENST00000334746	human	ensembl	69_37n	-1	known	missense	c.1462	p.S488R	1.000	smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114	239	0	0	222	37	14.29	-	-	-	G	93723687	T	G	93723687	3	3	628	1	0	0	0	0	1	0	0	0	1555	1551	54	5	1960	5	BTBD7	14	93723687	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	29122846	93723687	13625853	103	54469										
DDX24	0	genome.wustl.edu	37	chr14	94526604	94526604	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	taagctgcggcctggatactGcatcaggaagtagtacaagt	12	8	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	14	94526604	94526604	G	C	SNP	DDX24	ENST00000330836	human	ensembl	69_37n	-1	known	missense	c.1753	p.Q585E	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737	249	0	0	286	48	14.37	-	-	-	C	94526604	G	C	94526604	3	2	628	1	0	0	0	0	1	0	0	0	4382	1328	46	4	846	4	DDX24	14	94526604	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	802917	94526604	12822936	104	54470										
HERC2	0	genome.wustl.edu	37	chr15	28419644	28419644	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gtccacgccacactgtgggaCgacccacaagccacgcgtgt	11	16	0	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	15	28419644	28419644	C	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.9954	p.S3318	0.521	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	190	0	0	94	22	18.97	-	-	-	A	28419644	C	A	28419644	2	1	628	1	0	0	0	0	0	0	0	1	7109	523	19	3		3	HERC2	15	28419644	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		28419644	74111748	105	54471										
SCG5	0	genome.wustl.edu	37	chr15	32936016	32936016	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttgtgggcccccagagcattGaaggtatttactgtgttctg	12	8	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	15	32936016	32936016	G	A	SNP	SCG5	ENST00000300175	human	ensembl	69_37n	1	known	missense	c.223	p.E75K	1.000	pfam_Secretogranin_V	pfam_Secretogranin_V	-	no_errors	SCG5	HGNC	ENSG00000166922	28	0	0	33	6	15.38	-	-	-	A	32936016	G	A	32936016	3	1	628	1	0	0	0	0	1	0	0	0	13980	1291	45	2	225	2	SCG5	15	32936016	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	4516372	32936016	69595376	106	54472										
ELL3	0	genome.wustl.edu	37	chr15	44066875	44066875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atcttctccctcttgtaaatCctgattggtcaggccttgta	7	11	4	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	15	44066875	44066875	C	T	SNP	ELL3	ENST00000319359	human	ensembl	69_37n	-1	known	missense	c.742	p.D248N	0.990	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886	502	0	0	285	70	19.72	-	-	-	T	44066875	C	T	44066875	3	4	628	1	0	0	0	0	1	0	0	0	5101	855	30	2	471	2	ELL3	15	44066875	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11130859	44066875	58464517	107	54473										
MESDC2	0	genome.wustl.edu	37	chr15	81271807	81271807	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgaagatagcacggtctgatCccacaatgaaccttgggcag	11	10	1	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	15	81271807	81271807	C	G	SNP	MESDC2	ENST00000261758	human	ensembl	69_37n	-1	known	missense	c.458	p.G153A	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899	76	0	0	47	16	25.4	-	-	-	G	81271807	C	G	81271807	3	3	628	1	0	0	0	0	1	0	0	0	9552	855	30	2	250	2	MESDC2	15	81271807	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	37204932	81271807	21259585	108	54474										
ERN2	0	genome.wustl.edu	37	chr16	23722313	23722313	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tccaaggtggacaccagcagGaggttctctggcctgagagt	14	10	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	16	23722313	23722313	G	C	SNP	ERN2	ENST00000569903	human	ensembl	69_37n	-1	known	missense	c.203	p.S68C	0.999	NULL	NULL	-	no_errors	ERN2	HGNC	ENSG00000134398	151	0	0	86	19	18.1	-	-	-	C	23722313	G	C	23722313	3	2	628	1	0	0	0	0	1	0	0	0	5275	1161	41	2	2744	2	ERN2	16	23722313	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		23722313	66632440	109	54475										
FUK	0	genome.wustl.edu	37	chr16	70497598	70497598	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggccgtggaggacccagagaAgcgtgtgggcagcggaggag	21	8	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	16	70497598	70497598	A	C	SNP	FUK	ENST00000378912	human	ensembl	69_37n	1	known	missense	c.155	p.K52T	0.004	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	40	0	0	32	6	15.79	-	-	-	C	70497598	A	C	70497598	3	2	628	1	0	0	0	0	1	0	0	0	6145	72	3	5	161	5	FUK	16	70497598	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	46775285	70497598	19857155	110	54476										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	150	0	0	55	28	33.73	-	-	-	A	7577539	G	A	7577539	3	1	628	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		7577539	73617671	111	54477										
ALOXE3	0	genome.wustl.edu	37	chr17	8020169	8020169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gaagtgggatacactaccatCcggttcggtgacacagatgc	12	10	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	17	8020169	8020169	C	T	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	missense	c.673	p.D225N	0.965	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	176	0	0	59	19	24.36	-	-	-	T	8020169	C	T	8020169	3	4	628	1	0	0	0	0	1	0	0	0	542	855	30	2	1914	2	ALOXE3	17	8020169	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	442630	8020169	73175041	112	54478										
EXOC7	0	genome.wustl.edu	37	chr17	74084623	74084623	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atgaggccaggcagcttgttCtttgtgctggcagccgtgcc	14	11	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	17	74084623	74084623	C	G	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.1374	p.K458N	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	154	0	0	92	35	27.56	-	-	-	G	74084623	C	G	74084623	3	3	628	1	0	0	0	0	1	0	0	0	5346	912	32	2	873	2	EXOC7	17	74084623	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	66064454	74084623	7110587	113	54479										
CREB3L3	0	genome.wustl.edu	37	chr19	4171688	4171688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgcacaacgatgctgcctccCgcgtggctgctgatgctgtg	13	13	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	4171688	4171688	C	G	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.1108	p.R370G	0.603	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	8	0	0	11	5	31.25	-	-	-	G	4171688	C	G	4171688	3	3	628	1	0	0	0	0	1	0	0	0	3888	652	23	3	1146	3	CREB3L3	19	4171688	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		4171688	54957295	114	54480										
EMR3	0	genome.wustl.edu	37	chr19	14748956	14748956	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtgaggccaggaggctgcaGaaatggccacagtcacagcg	16	10	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	14748956	14748956	G	A	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.1445	p.S482F	0.938	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	140	0	0	89	12	11.88	-	-	-	A	14748956	G	A	14748956	3	1	628	1	0	0	0	0	1	0	0	0	5143	942	33	2	537	2	EMR3	19	14748956	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	10577268	14748956	44380027	115	54481										
ATP13A1	0	genome.wustl.edu	37	chr19	19756232	19756232	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gggtaccagcactgccatctCaggaaggcactttcagcttc	10	13	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	19756232	19756232	C	G	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	nonstop	c.3614	p.*1205S	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	38	0	0	30	10	25	-	-	-	G	19756232	C	G	19756232	4	3	628	1	0	0	0	0	0	0	0	0	1127	837	29	2	4	2	ATP13A1	19	19756232	Nonstop_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	5007276	19756232	39372751	116	54482										
ZNF536	0	genome.wustl.edu	37	chr19	31039202	31039202	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aaaggcactgaccttccttcCaaaagcacccacttctctga	5	15	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	31039202	31039202	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.2676	p.S892	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	75	0	0	70	13	15.66	-	-	-	T	31039202	C	T	31039202	2	4	628	1	0	0	0	0	0	0	0	1	18070	581	21	4		4	ZNF536	19	31039202	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	11282970	31039202	28089781	117	54483										
GRAMD1A	0	genome.wustl.edu	37	chr19	35504261	35504261	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tatgtctcccccttgcagctGaacggtctggggtgagttgg	14	10	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	35504261	35504261	G	C	SNP	GRAMD1A	ENST00000317991	human	ensembl	69_37n	1	known	silent	c.708	p.L236	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	100	0	0	60	13	17.81	-	-	-	C	35504261	G	C	35504261	2	2	628	1	0	0	0	0	0	0	0	1	6798	1277	45	2		2	GRAMD1A	19	35504261	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	4465059	35504261	23624722	118	54484										
GAPDHS	0	genome.wustl.edu	37	chr19	36035879	36035879	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gctaaggccggcattgcgctCaatgacaatttcgtgaagct	11	10	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	36035879	36035879	C	T	SNP	GAPDHS	ENST00000222286	human	ensembl	69_37n	1	known	silent	c.1125	p.L375	1.000	pfam_GlycerAld_3-P_DH_cat,pirsf_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,pirsf_GlycerAld/Erythrose_P_DH,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDHS	HGNC	ENSG00000105679	134	1	0.74	101	27	20.93	-	-	-	T	36035879	C	T	36035879	2	4	628	1	0	0	0	0	0	0	0	1	6287	813	29	2		2	GAPDHS	19	36035879	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	531618	36035879	23093104	119	54485										
MLL4	0	genome.wustl.edu	37	chr19	36210398	36210398	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	agggttttcattcagatgaaGatgtggcccccagttccctg	11	10	2	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	36210398	36210398	G	C	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.391	p.D131H	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	235	0	0	145	22	13.17	-	-	-	C	36210398	G	C	36210398	3	2	628	1	0	0	0	0	1	0	0	0	9694	942	33	2	397	2	MLL4	19	36210398	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	174519	36210398	22918585	120	54486										
ZNF829	0	genome.wustl.edu	37	chr19	37383084	37383084	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tttttaccagtgtgaatcctCtgatgtcgagtaacgagtga	10	7	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	37383084	37383084	C	G	SNP	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	missense	c.852	p.Q284H	0.911	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	129	0	0	53	33	38.37	-	-	-	G	37383084	C	G	37383084	3	3	628	1	0	0	0	0	1	0	0	0	18275	912	32	2	693	2	ZNF829	19	37383084	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	1172686	37383084	21745899	121	54487										
ZNF829	0	genome.wustl.edu	37	chr19	37383374	37383374	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctcacacattgattccagatCtgaaagaaaatacaaaggca	6	9	2	4			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	37383374	37383374	C	G	SNP	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	splice_site	c.563-1	e6-1	1.000	-	-	-	no_errors	ZNF829	HGNC	ENSG00000185869	50	0	0	44	10	18.52	-	-	-	G	37383374	C	G	37383374	5	3	628	1	0	0	0	0	0	0	1	0	18275	927	32	2	983	2	ZNF829	19	37383374	Splice_Site	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	290	37383374	21745609	122	54488										
HKR1	0	genome.wustl.edu	37	chr19	37853811	37853811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gctttagcctgaagtcaaacCtcattacccaccagagggcg	9	13	2	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	37853811	37853811	C	G	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	missense	c.1114	p.L372V	0.688	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	117	0	0	88	69	43.95	-	-	-	G	37853811	C	G	37853811	3	3	628	1	0	0	0	0	1	0	0	0	7245	681	24	4	1128	4	HKR1	19	37853811	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	470437	37853811	21275172	123	54489										
HKR1	0	genome.wustl.edu	37	chr19	37854586	37854586	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tagacaccagaggacacattCaggagagaagccttatattt	9	8	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	37854586	37854586	C	T	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	missense	c.1889	p.S630L	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	157	0	0	96	59	38.06	-	-	-	T	37854586	C	T	37854586	3	4	628	1	0	0	0	0	1	0	0	0	7245	838	29	2	1903	2	HKR1	19	37854586	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	775	37854586	21274397	124	54490										
SLC17A7	0	genome.wustl.edu	37	chr19	49938086	49938086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	catagtggacgcgggcagctGaggggatcagcatgtttaga	16	7	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	49938086	49938086	G	A	SNP	SLC17A7	ENST00000221485	human	ensembl	69_37n	-1	known	missense	c.488	p.S163L	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888	161	0	0	97	26	21.14	-	-	-	A	49938086	G	A	49938086	3	1	628	1	0	0	0	0	1	0	0	0	14511	1294	45	2	1230	2	SLC17A7	19	49938086	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	12083500	49938086	9190897	125	54491										
NLRP11	0	genome.wustl.edu	37	chr19	56297174	56297174	+	Frame_Shift_Del	DEL	T	T	-													0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gacagaaagatcaaactgggTtttctttcctttacagtcat							TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	19	56297174	56297174	T	-	DEL	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	frame_shift_del	c.2919	p.K973fs	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	79	0	0	115	13	10	-	-	-	-	56297174	T	-	56297174	7	5	628	1	0	1	0	1	0	0	0	0	10545	1722	60	0	186	0	NLRP11	19	56297174	Frame_Shift_Del	DEL	T	TCGA-C8-A12P-01A-11D-A10Y-09	6359088	56297174	2831809	126	54492										
CPXM1	0	genome.wustl.edu	37	chr20	2777840	2777840	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	cctggcctgactgcccacctGagactgggcaggccaggatc	13	15	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	20	2777840	2777840	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.830	p.S277L	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	58	0	0	87	15	14.71	-	-	-	A	2777840	G	A	2777840	3	1	628	1	0	0	0	0	1	0	0	0	3867	1294	45	2	1410	2	CPXM1	20	2777840	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		2777840	60247680	127	54493										
DOK5	0	genome.wustl.edu	37	chr20	53260061	53260061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggtgcccctgcctcgcagcgCctactggcagcacatcacac	10	18	1	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	20	53260061	53260061	C	T	SNP	DOK5	ENST00000262593	human	ensembl	69_37n	1	known	missense	c.800	p.A267V	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134	45	0	0	26	7	21.21	-	-	-	T	53260061	C	T	53260061	3	4	628	1	0	0	0	0	1	0	0	0	4735	739	26	4	826	4	DOK5	20	53260061	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	50482221	53260061	9765459	128	54494										
CHRNA4	0	genome.wustl.edu	37	chr20	61981765	61981765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tggtgtgcgtgcgtggcgagCggtggtgcacgttgagcacg	20	8	0	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	20	61981765	61981765	C	T	SNP	CHRNA4	ENST00000370263	human	ensembl	69_37n	-1	known	missense	c.998	p.R333H	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	196	1	0.51	241	30	10.99	-	-	-	T	61981765	C	T	61981765	3	4	628	1	0	0	0	0	1	0	0	0	3414	768	27	1	893	1	CHRNA4	20	61981765	Missense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	8721704	61981765	1043755	129	54495										
DOPEY2	0	genome.wustl.edu	37	chr21	37665636	37665636	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aggaaatcagtagctctgatGagatcaccatgaagagtgaa	11	6	3	5			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	21	37665636	37665636	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.6664	p.E2222K	0.706	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	121	0	0	78	14	15.22	-	-	-	A	37665636	G	A	37665636	3	1	628	1	0	0	0	0	1	0	0	0	4743	1291	45	2	6806	2	DOPEY2	21	37665636	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09		37665636	10464259	130	54496										
SH3BGR	0	genome.wustl.edu	37	chr21	40834433	40834433	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ttcctggagagaaaaaacctCaaaatgggattcctttgcct	8	9	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	21	40834433	40834433	C	G	SNP	SH3BGR	ENST00000452550	human	ensembl	69_37n	1	novel	nonsense	c.152	p.S51*	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SH3BGR	HGNC	ENSG00000185437	178	0	0	272	41	13.06	-	-	-	G	40834433	C	G	40834433	4	3	628	1	0	0	0	0	0	1	0	0	14328	827	29	2	373	2	SH3BGR	21	40834433	Nonsense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	3168797	40834433	7295462	131	54497										
CABIN1	0	genome.wustl.edu	37	chr22	24573644	24573644	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gagcccagccgggctaagtcCcgccccctgcccaacatgcc	10	20	0	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	22	24573644	24573644	C	G	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	silent	c.6378	p.S2126	0.864	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	62	0	0	62	24	27.91	-	-	-	G	24573644	C	G	24573644	2	3	628	1	0	0	0	0	0	0	0	1	2553	610	22	4		4	CABIN1	22	24573644	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		24573644	26730922	132	54498										
APOL4	0	genome.wustl.edu	37	chr22	36587925	36587925	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gccacatatggtgtaagattCttcagagcttcatagagagc	10	8	3	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	22	36587925	36587925	C	T	SNP	APOL4	ENST00000352371	human	ensembl	69_37n	-1	known	silent	c.252	p.K84	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL4	HGNC	ENSG00000100336	121	0	0	108	19	14.96	-	-	-	T	36587925	C	T	36587925	2	4	628	1	0	0	0	0	0	0	0	1	810	912	32	2		2	APOL4	22	36587925	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	12014281	36587925	14716641	133	54499										
L3MBTL2	0	genome.wustl.edu	37	chr22	41626159	41626159	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tcagtcattgctgtgcgtgtGaaggaagagcatctagacgt	13	7	3	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	22	41626159	41626159	G	A	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	silent	c.2022	p.V674	1.000	NULL	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	57	0	0	44	6	12	-	-	-	A	41626159	G	A	41626159	2	1	628	1	0	0	0	0	0	0	0	1	8646	1277	45	2		2	L3MBTL2	22	41626159	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	5038234	41626159	9678407	134	54500										
CRELD2	0	genome.wustl.edu	37	chr22	50319160	50319160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	acgtctgtgtgtgtcctgacGgcttcgaagaaacggaagat	13	8	1	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	22	50319160	50319160	G	A	SNP	CRELD2	ENST00000404488	human	ensembl	69_37n	1	known	missense	c.1111	p.G371S	0.997	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_Furin_repeat,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164	140	0	0	117	26	18.18	-	-	-	A	50319160	G	A	50319160	3	1	628	1	0	0	0	0	1	0	0	0	3897	1116	39	1	1149	1	CRELD2	22	50319160	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	8693001	50319160	985406	135	54501										
TBL1X	0	genome.wustl.edu	37	chrX	9621720	9621720	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tgcaccactttcaacgtttgCgagggagaggtactgcggtt	13	9	1	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	9621720	9621720	C	T	SNP	TBL1X	ENST00000217964	human	ensembl	69_37n	1	known	nonsense	c.94	p.R32*	0.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849	174	0	0	93	18	16.22	-	-	-	T	9621720	C	T	9621720	4	4	628	1	0	0	0	0	0	1	0	0	15734	760	27	1	96	1	TBL1X	23	9621720	Nonsense_Mutation	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09		9621720	145648840	136	54502										
EGFL6	0	genome.wustl.edu	37	chrX	13636126	13636126	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gagaaaagagaagagaaagcCctgaagaatgacatagagga	13	4	0	7			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	13636126	13636126	C	A	SNP	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	silent	c.1056	p.A352	0.074	NULL	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	33	0	0	55	19	25.68	-	-	-	A	13636126	C	A	13636126	2	1	628	1	0	0	0	0	0	0	0	1	4998	610	22	4		4	EGFL6	23	13636126	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	4014406	13636126	141634434	137	54503										
UBA1	0	genome.wustl.edu	37	chrX	47073983	47073983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ctgtcccagggcgtgtccatGctctattccttcttcatgcc	8	15	3	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	47073983	47073983	G	A	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.2988	p.M996I	1.000	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	185	0	0	143	36	20.11	-	-	-	A	47073983	G	A	47073983	3	1	628	1	0	0	0	0	1	0	0	0	16924	1319	46	4	3082	4	UBA1	23	47073983	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	33437857	47073983	108196577	138	54504										
HDAC6	0	genome.wustl.edu	37	chrX	48681990	48681990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ggaccttggagctaggcagcGaatctcaggtaaggctcacc	13	11	2	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	48681990	48681990	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.3223	p.E1075K	0.000	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	32	0	0	48	7	12.73	-	-	-	A	48681990	G	A	48681990	3	1	628	1	0	0	0	0	1	0	0	0	7062	1059	37	1	3275	1	HDAC6	23	48681990	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	1608007	48681990	106588570	139	54505										
AKAP4	0	genome.wustl.edu	37	chrX	49957750	49957750	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	atcaggtccttggccagtgaAtctgtggaagcattgatctt	11	8	3	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	49957750	49957750	A	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1614	p.D538E	0.999	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	228	0	0	204	49	19.37	-	-	-	T	49957750	A	T	49957750	3	4	628	1	0	0	0	0	1	0	0	0	453	98	4	5	958	5	AKAP4	23	49957750	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	1275760	49957750	105312810	140	54506										
WNK3	0	genome.wustl.edu	37	chrX	54263733	54263733	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tcagtctcacaagctgcgctGaaagataagaagttgtcacc	9	10	3	3			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	54263733	54263733	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	silent	c.4266	p.F1422	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	197	0	0	170	49	22.37	-	-	-	A	54263733	G	A	54263733	2	1	628	1	0	0	0	0	0	0	0	1	17476	1281	45	2		2	WNK3	23	54263733	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	4305983	54263733	101006827	141	54507										
KIF4A	0	genome.wustl.edu	37	chrX	69625735	69625735	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	aaaatcagcagcttctccgaGagaatgaaatcatcaagcag	8	9	4	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	69625735	69625735	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.2956	p.E986K	0.993	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	203	0	0	138	38	21.47	-	-	-	A	69625735	G	A	69625735	3	1	628	1	0	0	0	0	1	0	0	0	8355	943	33	2	3054	2	KIF4A	23	69625735	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	15362002	69625735	85644825	142	54508										
CXorf65	0	genome.wustl.edu	37	chrX	70324637	70324637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	accaagcagccaaggctccgGattcttgaggagaggcacaa	12	11	1	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	70324637	70324637	G	A	SNP	CXorf65	ENST00000374251	human	ensembl	69_37n	-1	known	missense	c.301	p.P101S	0.985	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165	309	0	0	220	56	20.29	-	-	-	A	70324637	G	A	70324637	3	1	628	1	0	0	0	0	1	0	0	0	4148	1174	41	2	262	2	CXorf65	23	70324637	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	698902	70324637	84945923	143	54509										
GPRASP2	0	genome.wustl.edu	37	chrX	101970776	101970776	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	caaatagagaagattgttttGaatctgagtctgaagatgag	11	3	2	7			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	101970776	101970776	G	C	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.979	p.E327Q	0.999	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	128	0	0	103	29	21.97	-	-	-	C	101970776	G	C	101970776	3	2	628	1	0	0	0	0	1	0	0	0	6774	1291	45	2	981	2	GPRASP2	23	101970776	Missense_Mutation	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	31646139	101970776	53299784	144	54510										
ACTRT1	0	genome.wustl.edu	37	chrX	127185866	127185866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	tcaaagagggctcggtcataAgtacaggctgttggctgggt	15	7	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	127185866	127185866	A	G	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	missense	c.320	p.L107P	0.998	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	206	0	0	186	30	13.89	-	-	-	G	127185866	A	G	127185866	3	3	628	1	0	0	0	0	1	0	0	0	218	72	3	5	814	5	ACTRT1	23	127185866	Missense_Mutation	SNP	A	TCGA-C8-A12P-01A-11D-A10Y-09	25215090	127185866	28084694	145	54511										
IGSF1	0	genome.wustl.edu	37	chrX	130412089	130412089	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	attgtgggggaagcagaaatGacaggtttggggaggatgtc	18	3	0	2			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	130412089	130412089	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	silent	c.2076	p.V692	0.996	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	100	0	0	77	15	16.3	-	-	-	T	130412089	G	T	130412089	2	4	628	1	0	0	0	0	0	0	0	1	7650	1277	45	2		2	IGSF1	23	130412089	Silent	SNP	G	TCGA-C8-A12P-01A-11D-A10Y-09	3226223	130412089	24858471	146	54512										
ATP6AP1	0	genome.wustl.edu	37	chrX	153660671	153660671	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	gccgtcgactggtatgcagtCagcactctgaccacttacct	9	14	2	1			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	153660671	153660671	C	T	SNP	ATP6AP1	ENST00000369762	human	ensembl	69_37n	1	known	silent	c.423	p.V141	0.999	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	135	0	0	108	18	14.29	-	-	-	T	153660671	C	T	153660671	2	4	628	1	0	0	0	0	0	0	0	1	1169	813	29	2		2	ATP6AP1	23	153660671	Silent	SNP	C	TCGA-C8-A12P-01A-11D-A10Y-09	23248582	153660671	1609889	147	54513										
CTAG2	0	genome.wustl.edu	37	chrX	153881773	153881773	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.398648648648649	59	2.07879019621101e-17	3.37549816063765	4.21560876440027	2.94409001275954	0.155765166978758	0.667022451250275	42	ccgtcgaaccccctgtgcccTggccttcggcctgcatggct	11	18	0	0			TCGA-C8-A12P-01A-11D-A10Y-09	TCGA-C8-A12P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	540fe594-0186-40d3-b519-c1ccebe82247	323e0bfd-8f8f-41a8-a94a-8d2d862a15b1	X	153881773	153881773	T	C	SNP	CTAG2	ENST00000369585	human	ensembl	69_37n	-1	known	missense	c.17	p.Q6R	0.001	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890	8	0	0	2	4	66.67	-	-	-	C	153881773	T	C	153881773	3	2	628	1	0	0	0	0	1	0	0	0	4023	1580	55	5	762	5	CTAG2	23	153881773	Missense_Mutation	SNP	T	TCGA-C8-A12P-01A-11D-A10Y-09	221102	153881773	1388787	148	54514										
SRRM1	0	genome.wustl.edu	37	chr1	24978962	24978962	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccaaacctgaacctataccaGagcctaaagaaccttctccg	5	15	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	24978962	24978962	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	69_37n	1	known	missense	c.763	p.E255K	1.000	NULL	pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	SRRM1	HGNC	ENSG00000133226	68	0	0	23	6	20.69	-	-	-	A	24978962	G	A	24978962	3	1	629	1	0	0	0	0	1	0	0	0	15259	943	33	2	789	2	SRRM1	1	24978962	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		24978962	224271659	1	54515										
ADPRHL2	0	genome.wustl.edu	37	chr1	36557241	36557241	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttgctcaggagtacaagaaaGaccctgacaggggctatggt	13	8	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	36557241	36557241	G	A	SNP	ADPRHL2	ENST00000373178	human	ensembl	69_37n	1	known	missense	c.331	p.D111N	0.998	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863	121	0	0	82	25	23.36	-	-	-	A	36557241	G	A	36557241	3	1	629	1	0	0	0	0	1	0	0	0	333	942	33	2	341	2	ADPRHL2	1	36557241	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	11578279	36557241	212693380	2	54516										
SETDB1	0	genome.wustl.edu	37	chr1	150923915	150923915	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aggccaaatcaaccctaactCtggctaccagtacaagagac	7	13	2	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	150923915	150923915	C	T	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	1	known	missense	c.2288	p.S763F	1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pfscan_Pre-SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	81	0	0	289	33	10.25	-	-	-	T	150923915	C	T	150923915	3	4	629	1	0	0	0	0	1	0	0	0	14226	913	32	2	2338	2	SETDB1	1	150923915	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	114366674	150923915	98326706	3	54517										
EFNA3	0	genome.wustl.edu	37	chr1	155058975	155058975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aacgggaacacctgcccctgGccgtgggcatcgccttcttc	11	16	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	155058975	155058975	G	T	SNP	EFNA3	ENST00000368408	human	ensembl	69_37n	1	known	missense	c.673	p.A225S	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA3	HGNC	ENSG00000143590	27	0	0	46	12	20.69	-	-	-	T	155058975	G	T	155058975	3	4	629	1	0	0	0	0	1	0	0	0	4987	1203	42	4	691	4	EFNA3	1	155058975	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	4135060	155058975	94191646	4	54518										
SCAMP3	0	genome.wustl.edu	37	chr1	155231906	155231906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gttgtcaagctcgctgggctCggcgaacgggtttccgccgt	15	12	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	155231906	155231906	C	T	SNP	SCAMP3	ENST00000302631	human	ensembl	69_37n	-1	known	missense	c.37	p.E13K	0.999	NULL	pfam_SCAMP	-	no_errors	SCAMP3	HGNC	ENSG00000116521	12	0	0	57	13	18.57	-	-	-	T	155231906	C	T	155231906	3	4	629	1	0	0	0	0	1	0	0	0	13959	893	31	1	1042	1	SCAMP3	1	155231906	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	172931	155231906	94018715	5	54519										
INSRR	0	genome.wustl.edu	37	chr1	156823931	156823931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tccgtagacacggaagagcaGcaggtagtcggtgacctggg	16	9	0	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	156823931	156823931	G	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	silent	c.250	p.L84	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	25	0	0	49	22	30.99	-	-	-	A	156823931	G	A	156823931	2	1	629	1	0	0	0	0	0	0	0	1	7828	962	34	4		4	INSRR	1	156823931	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1592025	156823931	92426690	6	54520										
SPTA1	0	genome.wustl.edu	37	chr1	158644181	158644181	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gaggtcttgaccagtctcatCagcagattgaaatcggtcat	10	9	4	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	158644181	158644181	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1288	p.D430N	0.217	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	176	0	0	137	32	18.93	-	-	-	T	158644181	C	T	158644181	3	4	629	1	0	0	0	0	1	0	0	0	15207	826	29	2	6143	2	SPTA1	1	158644181	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	1820250	158644181	90606440	7	54521										
CEP350	0	genome.wustl.edu	37	chr1	180053301	180053301	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gcccaagaagccagtctgatCaagcagttagaggttagaca	11	9	2	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	180053301	180053301	C	T	SNP	CEP350	ENST00000429851	human	ensembl	69_37n	1	novel	nonsense	c.796	p.Q266*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP350	HGNC	ENSG00000135837	195	0	0	228	31	11.97	-	-	-	T	180053301	C	T	180053301	4	4	629	1	0	0	0	0	0	1	0	0	3283	816	29	2	6391	2	CEP350	1	180053301	Nonsense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	21409120	180053301	69197320	8	54522										
LGR6	0	genome.wustl.edu	37	chr1	202266674	202266674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gctgcaggagttccctgtggCcatccggaccctgggcagac	14	14	0	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	202266674	202266674	C	T	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	missense	c.755	p.A252V	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	94	0	0	134	22	14.1	-	-	-	T	202266674	C	T	202266674	3	4	629	1	0	0	0	0	1	0	0	0	8813	739	26	4	928	4	LGR6	1	202266674	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	22213373	202266674	46983947	9	54523										
GNPAT	0	genome.wustl.edu	37	chr1	231396288	231396288	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cttcaatctgtggatgtcctCcgagaggaagtgagtgagat	13	7	2	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	1	231396288	231396288	C	T	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	silent	c.297	p.L99	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	187	0	0	91	25	21.37	-	-	-	T	231396288	C	T	231396288	2	4	629	1	0	0	0	0	0	0	0	1	6593	842	30	2		2	GNPAT	1	231396288	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	29129614	231396288	17854333	10	54524										
ITSN2	0	genome.wustl.edu	37	chr2	24484451	24484451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cagaggaagttgaggtagcaGataaagaaactgtaggagga	15	3	0	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	2	24484451	24484451	G	C	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.2516	p.S839C	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	428	0	0	127	51	28.65	-	-	-	C	24484451	G	C	24484451	3	2	629	1	0	0	0	0	1	0	0	0	7981	942	33	2	2708	2	ITSN2	2	24484451	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		24484451	218714922	11	54525										
MSH6	0	genome.wustl.edu	37	chr2	48027214	48027214	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tcaaaaaatgccttattgatCaggagcttttatcaatggct	7	7	3	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	2	48027214	48027214	C	G	SNP	MSH6	ENST00000234420	human	ensembl	69_37n	1	known	missense	c.2092	p.Q698E	1.000	pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	196	0	0	80	25	23.81	-	-	-	G	48027214	C	G	48027214	3	3	629	1	0	0	0	0	1	0	0	0	9946	827	29	2	2106	2	MSH6	2	48027214	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	23542763	48027214	195172159	12	54526										
UXS1	0	genome.wustl.edu	37	chr2	106780148	106780148	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttctaaatctctgattttctCtcttagtggttcaaccatct	4	10	6	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	2	106780148	106780148	C	T	SNP	UXS1	ENST00000283148	human	ensembl	69_37n	-1	known	missense	c.205	p.E69K	1.000	pfam_UXS1_N	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	217	0	0	65	22	25.29	-	-	-	T	106780148	C	T	106780148	3	4	629	1	0	0	0	0	1	0	0	0	17206	922	32	2	1120	2	UXS1	2	106780148	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	58752934	106780148	136419225	13	54527										
BAZ2B	0	genome.wustl.edu	37	chr2	160295653	160295653	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgctactaatgccttcacttGaggtgtctgatgatgtgcct	10	9	2	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	2	160295653	160295653	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	nonsense	c.767	p.S256*	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	683	0	0	353	114	24.41	-	-	-	C	160295653	G	C	160295653	4	2	629	1	0	0	0	0	0	1	0	0	1336	1294	45	2	5863	2	BAZ2B	2	160295653	Nonsense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	53515505	160295653	82903720	14	54528										
PLCD1	0	genome.wustl.edu	37	chr3	38051649	38051649	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gcatagtcccggatggccctGagcacatcgcagaagaggat	13	11	0	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	3	38051649	38051649	G	A	SNP	PLCD1	ENST00000463876	human	ensembl	69_37n	-1	known	silent	c.1173	p.L391	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	48	0	0	91	22	19.47	-	-	-	A	38051649	G	A	38051649	2	1	629	1	0	0	0	0	0	0	0	1	12105	1277	45	2		2	PLCD1	3	38051649	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		38051649	159970781	15	54529										
DNAH1	0	genome.wustl.edu	37	chr3	52360796	52360796	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gacattgagcagttgctgttCagccagggcatcgactccaa	11	11	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	3	52360796	52360796	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.627	p.F209	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	55	0	0	52	37	41.57	-	-	-	T	52360796	C	T	52360796	2	4	629	1	0	0	0	0	0	0	0	1	4633	825	29	2		2	DNAH1	3	52360796	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	14309147	52360796	145661634	16	54530										
PROS1	0	genome.wustl.edu	37	chr3	93629501	93629501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ggtcaggataagcattagttGactgacgtgcagcagtgaat	13	6	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	3	93629501	93629501	G	A	SNP	PROS1	ENST00000394236	human	ensembl	69_37n	-1	known	missense	c.308	p.S103L	0.010	superfamily_GLA_domain	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	228	0	0	144	31	17.51	-	-	-	A	93629501	G	A	93629501	3	1	629	1	0	0	0	0	1	0	0	0	12639	1294	45	2	1770	2	PROS1	3	93629501	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	41268705	93629501	104392929	17	54531										
ZPLD1	0	genome.wustl.edu	37	chr3	102181129	102181129	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	attgtttcatcattaggattCaacctacaaccagcagttaa	5	9	3	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	3	102181129	102181129	C	G	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	nonsense	c.635	p.S212*	1.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	379	0	0	192	46	19.25	-	-	-	G	102181129	C	G	102181129	4	3	629	1	0	0	0	0	0	1	0	0	18314	838	29	2	657	2	ZPLD1	3	102181129	Nonsense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	8551628	102181129	95841301	18	54532										
ITGB5	0	genome.wustl.edu	37	chr3	124578168	124578168	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gagcccgaacccttgctgctGaggggcaggctcctcaggac	14	14	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	3	124578168	124578168	G	T	SNP	ITGB5	ENST00000296181	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781	51	0	0	28	34	54.84	-	-	-	T	124578168	G	T	124578168	2	4	629	1	0	0	0	0	0	0	0	1	7952	1277	45	2		2	ITGB5	3	124578168	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	22397039	124578168	73444262	19	54533										
C4orf29	0	genome.wustl.edu	37	chr4	128938554	128938554	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aatgtgtccgacctttttgtGatgggaggagctcttgtttt	12	6	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	4	128938554	128938554	G	C	SNP	C4orf29	ENST00000398965	human	ensembl	69_37n	1	known	silent	c.507	p.V169	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074	324	0	0	113	41	26.62	-	-	-	C	128938554	G	C	128938554	2	2	629	1	0	0	0	0	0	0	0	1	2280	1277	45	2		2	C4orf29	4	128938554	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		128938554	62215722	20	54534										
C5orf42	0	genome.wustl.edu	37	chr5	37213766	37213766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gaaacgagccatggactggaCgactctcactgctgcctcag	11	13	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	5	37213766	37213766	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2815	p.V939I	0.989	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	81	0	0	87	16	15.53	-	-	-	T	37213766	C	T	37213766	3	4	629	1	0	0	0	0	1	0	0	0	2322	536	19	1	6926	1	C5orf42	5	37213766	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		37213766	143701494	21	54535										
C5orf42	0	genome.wustl.edu	37	chr5	37224748	37224748	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgcttcatgtgtcatcttttCagttaactgactatcagctt	6	9	5	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	5	37224748	37224748	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2386	p.E796K	0.849	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	465	0	0	276	76	21.59	-	-	-	T	37224748	C	T	37224748	3	4	629	1	0	0	0	0	1	0	0	0	2322	835	29	2	7367	2	C5orf42	5	37224748	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	10982	37224748	143690512	22	54536										
GZMK	0	genome.wustl.edu	37	chr5	54329596	54329597	+	Frame_Shift_Ins	INS	-	-	AT													0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tttttcttccttccagggtgINSactcagggggccccttgatc							TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	5	54329596	54329597	-	AT	INS	GZMK	ENST00000231009	human	ensembl	69_37n	1	known	frame_shift_ins	c.637_638	p.S214fs	1.000:1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	GZMK	HGNC	ENSG00000113088	179	0	0	49	60	55.05	-	-	-	AT	54329597	-	AT	54329596	7	5	629	1	0	1	1	0	0	0	0	0	6969	1290	45	0	655	0	GZMK	5	54329596	Frame_Shift_Ins	INS	-	TCGA-C8-A12Q-01A-11D-A10Y-09	17104848	54329596	126585664	23	54537										
GPR98	0	genome.wustl.edu	37	chr5	90077371	90077371	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cagaaggcatcattgaatttGacccaaagtatactgccttc	7	10	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	5	90077371	90077371	G	C	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.13207	p.D4403H	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	127	0	0	43	15	25.86	-	-	-	C	90077371	G	C	90077371	3	2	629	1	0	0	0	0	1	0	0	0	6772	1290	45	2	13465	2	GPR98	5	90077371	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	35747775	90077371	90837889	24	54538										
ITK	0	genome.wustl.edu	37	chr5	156675970	156675970	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttcggttgtacaagccccggCtggcctccacacacgtctac	9	16	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	5	156675970	156675970	C	A	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.1744	p.L582M	0.275	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	98	0	0	68	36	34.62	-	-	-	A	156675970	C	A	156675970	3	1	629	1	0	0	0	0	1	0	0	0	7963	796	28	4	1806	4	ITK	5	156675970	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	66598599	156675970	24239290	25	54539										
GPSM3	0	genome.wustl.edu	37	chr6	32159275	32159275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gaccgctgggcttccatccgCtggcactggaggagtggagg	17	11	0	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	6	32159275	32159275	C	A	SNP	GPSM3	ENST00000375040	human	ensembl	69_37n	-1	known	missense	c.351	p.Q117H	1.000	pfam_GoLoco_motif,smart_GoLoco_motif	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654	21	0	0	36	7	16.28	-	-	-	A	32159275	C	A	32159275	3	1	629	1	0	0	0	0	1	0	0	0	6787	796	28	4	135	4	GPSM3	6	32159275	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		32159275	138955792	26	54540										
DEFB114	0	genome.wustl.edu	37	chr6	49928136	49928136	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gtaacgtttggtgcaacgatCagcattcaccaaggtacatg	10	9	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	6	49928136	49928136	C	A	SNP	DEFB114	ENST00000322066	human	ensembl	69_37n	-1	known	missense	c.79	p.D27Y	0.014	NULL	NULL	-	no_errors	DEFB114	HGNC	ENSG00000177684	228	0	0	119	30	20.13	-	-	-	A	49928136	C	A	49928136	3	1	629	1	0	0	0	0	1	0	0	0	4438	826	29	2	133	2	DEFB114	6	49928136	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	17768861	49928136	121186931	27	54541										
COL12A1	0	genome.wustl.edu	37	chr6	75893674	75893674	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tctggtattctgtgtctgctGagaggtcgcgaacactgagc	13	9	3	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	6	75893674	75893674	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.1184	p.S395L	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	150	0	0	118	27	18.62	-	-	-	A	75893674	G	A	75893674	3	1	629	1	0	0	0	0	1	0	0	0	3699	1294	45	2	8239	2	COL12A1	6	75893674	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	25965538	75893674	95221393	28	54542										
MLLT4	0	genome.wustl.edu	37	chr6	168319551	168319551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gccagaagatggttattcttGtgatgttgtcagaaacattc	10	6	2	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	6	168319551	168319551	G	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.2825	p.C942F	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	175	0	0	67	27	28.72	-	-	-	T	168319551	G	T	168319551	3	4	629	1	0	0	0	0	1	0	0	0	9700	1377	48	4	2903	4	MLLT4	6	168319551	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	92425877	168319551	2795516	29	54543										
PHF14	0	genome.wustl.edu	37	chr7	11030350	11030350	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gactcgctgattcttgagaaGagtcaaaactggagctctca	10	9	3	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	7	11030350	11030350	G	C	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	missense	c.921	p.K307N	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	364	0	0	171	91	34.73	-	-	-	C	11030350	G	C	11030350	3	2	629	1	0	0	0	0	1	0	0	0	11899	933	33	2	935	2	PHF14	7	11030350	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		11030350	148108313	30	54544										
CHCHD2	0	genome.wustl.edu	37	chr7	56171926	56171926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cctaaattcccacctggtaaGtgatgtcaggcctcgcaggc	10	13	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	7	56171926	56171926	G	A	SNP	CHCHD2	ENST00000395422	human	ensembl	69_37n	-1	known	missense	c.293	p.T98I	1.000	NULL	pfam_CHCH	-	no_errors	CHCHD2	HGNC	ENSG00000106153	14	0	0	33	9	21.43	-	-	-	A	56171926	G	A	56171926	3	1	629	1	0	0	0	0	1	0	0	0	3345	1029	36	4	174	4	CHCHD2	7	56171926	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	45141576	56171926	102966737	31	54545										
PHTF2	0	genome.wustl.edu	37	chr7	77531171	77531171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tatttttcccctttttcttcCggtggtggttacaagtaaca	7	9	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	7	77531171	77531171	C	T	SNP	PHTF2	ENST00000248550	human	ensembl	69_37n	1	known	missense	c.379	p.R127W	1.000	pfam_TF_homeodomain_male	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576	574	0	0	250	61	19.55	-	-	-	T	77531171	C	T	77531171	3	4	629	1	0	0	0	0	1	0	0	0	11937	643	23	1	295	1	PHTF2	7	77531171	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	21359245	77531171	81607492	32	54546										
CDHR3	0	genome.wustl.edu	37	chr7	105660837	105660837	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aggttactgtgaacatccttGaagaaaatgatgaaaagcca	9	6	0	5			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	7	105660837	105660837	G	C	SNP	CDHR3	ENST00000317716	human	ensembl	69_37n	1	known	missense	c.1672	p.E558Q	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536	190	0	0	133	40	22.99	-	-	-	C	105660837	G	C	105660837	3	2	629	1	0	0	0	0	1	0	0	0	3149	1291	45	2	1722	2	CDHR3	7	105660837	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	28129666	105660837	53477826	33	54547										
EPPK1	0	genome.wustl.edu	37	chr8	144944180	144944180	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccggtgtggggaaggtttcgGaggagctggacaaggctgtc	19	7	0	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	8	144944180	144944180	G	C	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	missense	c.3242	p.S1081C	0.003	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	26	0	0	37	11	22.92	-	-	-	C	144944180	G	C	144944180	3	2	629	1	0	0	0	0	1	0	0	0	5227	1174	41	2	4024	2	EPPK1	8	144944180	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		144944180	1419842	34	54548										
UBAP1	0	genome.wustl.edu	37	chr9	34241364	34241364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tcacagtacagccacaatgcCacctcctattaaccccatcc	3	18	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	9	34241364	34241364	C	T	SNP	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	missense	c.533	p.P178L	1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	201	0	0	135	70	34.15	-	-	-	T	34241364	C	T	34241364	3	4	629	1	0	0	0	0	1	0	0	0	16933	594	21	4	588	4	UBAP1	9	34241364	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		34241364	106972067	35	54549										
RNF20	0	genome.wustl.edu	37	chr9	104323426	104323426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aagcacaactggagttggctCagaagaagctacatgatttt	10	7	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	9	104323426	104323426	C	G	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.2563	p.Q855E	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	133	0	0	68	28	29.17	-	-	-	G	104323426	C	G	104323426	3	3	629	1	0	0	0	0	1	0	0	0	13559	827	29	2	2629	2	RNF20	9	104323426	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	70082062	104323426	36890005	36	54550										
GOLGA1	0	genome.wustl.edu	37	chr9	127660909	127660909	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tctttaagggctgcattttcTtgctccagttgtctctgcca	8	11	3	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	9	127660909	127660909	T	C	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	silent	c.1326	p.Q442	1.000	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	355	0	0	161	46	22.22	-	-	-	C	127660909	T	C	127660909	2	2	629	1	0	0	0	0	0	0	0	1	6603	1606	56	5		5	GOLGA1	9	127660909	Silent	SNP	T	TCGA-C8-A12Q-01A-11D-A10Y-09	23337483	127660909	13552522	37	54551										
PMPCA	0	genome.wustl.edu	37	chr9	139309033	139309033	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccatgtatgctgtgtctgctGatagcaaaggcttggacacg	12	9	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	9	139309033	139309033	G	A	SNP	PMPCA	ENST00000371717	human	ensembl	69_37n	1	known	missense	c.466	p.D156N	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	PMPCA	HGNC	ENSG00000165688	103	0	0	118	44	27.16	-	-	-	A	139309033	G	A	139309033	3	1	629	1	0	0	0	0	1	0	0	0	12214	1290	45	2	484	2	PMPCA	9	139309033	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	11648124	139309033	1904398	38	54552										
C10orf53	0	genome.wustl.edu	37	chr10	50916467	50916467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ctccaggctgacatttcaccAgcttagcagcccgtgtagga	10	13	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	10	50916467	50916467	A	G	SNP	C10orf53	ENST00000374112	human	ensembl	69_37n	1	known	missense	c.278	p.Q93R	0.002	NULL	NULL	-	no_errors	C10orf53	HGNC	ENSG00000178645	135	0	0	101	29	22.31	-	-	-	G	50916467	A	G	50916467	3	3	629	1	0	0	0	0	1	0	0	0	1616	188	7	5	357	5	C10orf53	10	50916467	Missense_Mutation	SNP	A	TCGA-C8-A12Q-01A-11D-A10Y-09		50916467	84618280	39	54553										
C10orf12	0	genome.wustl.edu	37	chr10	98742331	98742331	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	agaagaaagtcctcagtgctCagaaaatcagagttccccaa	8	10	3	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	10	98742331	98742331	C	T	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1184	p.S395L	0.047	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	51	0	0	33	10	23.26	-	-	-	T	98742331	C	T	98742331	3	4	629	1	0	0	0	0	1	0	0	0	1599	838	29	2	1186	2	C10orf12	10	98742331	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	47825864	98742331	36792416	40	54554										
ACTR1A	0	genome.wustl.edu	37	chr10	104241877	104241877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ggatgccttcactctcctctCcaatcaaatctggcctgaag	7	14	5	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	10	104241877	104241877	C	T	SNP	ACTR1A	ENST00000369905	human	ensembl	69_37n	-1	known	missense	c.806	p.G269E	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1A	HGNC	ENSG00000138107	78	0	0	72	14	16.28	-	-	-	T	104241877	C	T	104241877	3	4	629	1	0	0	0	0	1	0	0	0	209	855	30	2	340	2	ACTR1A	10	104241877	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	5499546	104241877	31292870	41	54555										
TRIM21	0	genome.wustl.edu	37	chr11	4411328	4411328	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	caaagggccttcccatctttCtcacagaacaggtgaagtct	8	12	3	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	11	4411328	4411328	C	A	SNP	TRIM21	ENST00000254436	human	ensembl	69_37n	-1	known	missense	c.312	p.E104D	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box,prints_Znf_B-box_chordata	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109	83	0	0	49	22	30.99	-	-	-	A	4411328	C	A	4411328	3	1	629	1	0	0	0	0	1	0	0	0	16591	912	32	2	1139	2	TRIM21	11	4411328	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		4411328	130595188	42	54556										
ZDHHC13	0	genome.wustl.edu	37	chr11	19169220	19169220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tcctcttcactgggccatccGgtaaggtttctttgaacact	8	12	3	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	11	19169220	19169220	G	A	SNP	ZDHHC13	ENST00000446113	human	ensembl	69_37n	1	known	missense	c.374	p.R125Q	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC13	HGNC	ENSG00000177054	397	1	0.25	99	44	30.77	-	-	-	A	19169220	G	A	19169220	3	1	629	1	0	0	0	0	1	0	0	0	17699	1130	39	1	388	1	ZDHHC13	11	19169220	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	14757892	19169220	115837296	43	54557										
OR5M3	0	genome.wustl.edu	37	chr11	56237827	56237827	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gggttgttaagctgaggactGaccttgattaacaccatcat	10	8	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	11	56237827	56237827	G	A	SNP	OR5M3	ENST00000312240	human	ensembl	69_37n	-1	known	silent	c.147	p.V49	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M3	HGNC	ENSG00000174937	155	1	0.64	76	27	26.21	-	-	-	A	56237827	G	A	56237827	2	1	629	1	0	0	0	0	0	0	0	1	11248	1277	45	2		2	OR5M3	11	56237827	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	37068607	56237827	78768689	44	54558										
ADRBK1	0	genome.wustl.edu	37	chr11	67050618	67050618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ggccgtggagctgcccgactCcttctcccctgaactacgct	10	17	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	11	67050618	67050618	C	G	SNP	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	missense	c.1247	p.S416C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	76	0	0	387	46	10.6	-	-	-	G	67050618	C	G	67050618	3	3	629	1	0	0	0	0	1	0	0	0	343	855	30	2	1305	2	ADRBK1	11	67050618	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	10812791	67050618	67955898	45	54559										
ME3	0	genome.wustl.edu	37	chr11	86160981	86160981	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccagatctttcttgtggcctCtgccttcggtacaccttctt	7	14	4	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	11	86160981	86160981	C	T	SNP	ME3	ENST00000359636	human	ensembl	69_37n	-1	known	missense	c.1081	p.E361K	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376	173	0	0	233	43	15.52	-	-	-	T	86160981	C	T	86160981	3	4	629	1	0	0	0	0	1	0	0	0	9490	922	32	2	757	2	ME3	11	86160981	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	19110363	86160981	48845535	46	54560										
DCTN2	0	genome.wustl.edu	37	chr12	57925870	57925870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gtggtatccaagtgtgtcagGagctgaccaaactgcatggc	13	9	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	12	57925870	57925870	G	A	SNP	DCTN2	ENST00000550201	human	ensembl	69_37n	-1	known	missense	c.944	p.S315F	0.956	NULL	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	183	0	0	140	38	21.35	-	-	-	A	57925870	G	A	57925870	3	1	629	1	0	0	0	0	1	0	0	0	4338	1161	41	2	166	2	DCTN2	12	57925870	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		57925870	75926025	47	54561										
DHX37	0	genome.wustl.edu	37	chr12	125461919	125461919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgcttcatagagaaactgagGcacctgtgtggtcttcccgc	11	11	2	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	12	125461919	125461919	G	A	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.856	p.P286S	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	53	0	0	37	10	21.28	-	-	-	A	125461919	G	A	125461919	3	1	629	1	0	0	0	0	1	0	0	0	4546	1203	42	4	2709	4	DHX37	12	125461919	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	67536049	125461919	8389976	48	54562										
RIMBP2	0	genome.wustl.edu	37	chr12	130926616	130926616	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttgctgttggtgggtagccaGgagagctgggcggagatctg	19	6	1	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	12	130926616	130926616	G	T	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.1230	p.S410	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	31	0	0	71	13	15.48	-	-	-	T	130926616	G	T	130926616	2	4	629	1	0	0	0	0	0	0	0	1	13447	987	35	4		4	RIMBP2	12	130926616	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	5464697	130926616	2925279	49	54563										
REC8	0	genome.wustl.edu	37	chr14	24644763	24644763	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tctccaaagattcgacacctCttagaggctgcaatcccaga	7	13	2	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	14	24644763	24644763	C	T	SNP	REC8	ENST00000311457	human	ensembl	69_37n	1	known	silent	c.474	p.L158	0.981	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918	92	0	0	71	25	26.04	-	-	-	T	24644763	C	T	24644763	2	4	629	1	0	0	0	0	0	0	0	1	13282	900	32	2		2	REC8	14	24644763	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		24644763	82704777	50	54564										
MOAP1	0	genome.wustl.edu	37	chr14	93650053	93650053	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	catccagcgtccaaattcttCttctcctggttctggagact	7	13	4	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	14	93650053	93650053	C	A	SNP	MOAP1	ENST00000298894	human	ensembl	69_37n	-1	known	nonsense	c.535	p.E179*	0.960	NULL	NULL	-	no_errors	MOAP1	HGNC	ENSG00000165943	80	0	0	55	31	36.05	-	-	-	A	93650053	C	A	93650053	4	1	629	1	0	0	0	0	0	1	0	0	9752	922	32	2	524	2	MOAP1	14	93650053	Nonsense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	69005290	93650053	13699487	51	54565										
DYNC1H1	0	genome.wustl.edu	37	chr14	102516407	102516407	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gttttggcttccgcctcacaGgtttgaaacttcaaggggcc	11	11	2	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	14	102516407	102516407	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	splice_site	c.13685-1	e77-1	1.000	-	-	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	32	0	0	74	16	17.78	-	-	-	A	102516407	G	A	102516407	5	1	629	1	0	0	0	0	0	0	1	0	4876	1014	35	4	13990	4	DYNC1H1	14	102516407	Splice_Site	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	8866354	102516407	4833133	52	54566										
BAHD1	0	genome.wustl.edu	37	chr15	40750766	40750766	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gcaacatggagcagggggttGagggtgtggagccaggcatg	20	6	0	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	40750766	40750766	G	A	SNP	BAHD1	ENST00000416165	human	ensembl	69_37n	1	known	missense	c.103	p.E35K	0.914	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320	30	0	0	19	9	32.14	-	-	-	A	40750766	G	A	40750766	3	1	629	1	0	0	0	0	1	0	0	0	1301	1291	45	2	105	2	BAHD1	15	40750766	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		40750766	61780626	53	54567										
PLA2G4F	0	genome.wustl.edu	37	chr15	42446363	42446363	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tcaggtcaaacaggagcagaGagagctggtcgctgcccagg	15	10	2	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	42446363	42446363	G	C	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.377	p.S126C	0.038	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	88	0	0	108	32	22.86	-	-	-	C	42446363	G	C	42446363	3	2	629	1	0	0	0	0	1	0	0	0	12080	942	33	2	2240	2	PLA2G4F	15	42446363	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1695597	42446363	60085029	54	54568										
ZFP106	0	genome.wustl.edu	37	chr15	42749157	42749157	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	taaaaaatcaattacttaccGactttgttctttcctttgtt	3	8	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	42749157	42749157	G	A	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	nonsense	c.247	p.R83*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	40	0	0	25	8	24.24	-	-	-	A	42749157	G	A	42749157	4	1	629	1	0	0	0	0	0	1	0	0	17733	1072	37	1	5480	1	ZFP106	15	42749157	Nonsense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	302794	42749157	59782235	55	54569										
MYO5A	0	genome.wustl.edu	37	chr15	52652227	52652227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gctaaagatatattcagactCgttgctgctgtgggtggagt	13	6	1	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	52652227	52652227	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.3361	p.E1121K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	186	0	0	146	59	28.78	-	-	-	T	52652227	C	T	52652227	3	4	629	1	0	0	0	0	1	0	0	0	10150	893	31	1	2274	1	MYO5A	15	52652227	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	9903070	52652227	49879165	56	54570										
VPS13C	0	genome.wustl.edu	37	chr15	62239428	62239428	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgcaatgttacacttctgatCacagacaaagacattaaatg	6	8	2	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	62239428	62239428	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.4840	p.D1614Y	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	265	1	0.38	107	33	23.57	-	-	-	A	62239428	C	A	62239428	3	1	629	1	0	0	0	0	1	0	0	0	17288	826	29	2	6621	2	VPS13C	15	62239428	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	9587201	62239428	40291964	57	54571										
TLN2	0	genome.wustl.edu	37	chr15	63031644	63031644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tggggaagtggtccatgccaCccggggccagagtggagagt	18	9	0	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	63031644	63031644	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.3785	p.T1262I	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	106	0	0	104	44	29.73	-	-	-	T	63031644	C	T	63031644	3	4	629	1	0	0	0	0	1	0	0	0	16043	507	18	4	3895	4	TLN2	15	63031644	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	792216	63031644	39499748	58	54572										
ALDH1A3	0	genome.wustl.edu	37	chr15	101438383	101438383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccctgcatcgtgtgtgcggaCgctgactgtgagtctctgcc	13	13	1	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	15	101438383	101438383	C	G	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	missense	c.876	p.D292E	0.009	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	61	0	0	28	14	33.33	-	-	-	G	101438383	C	G	101438383	3	3	629	1	0	0	0	0	1	0	0	0	492	535	19	3	906	3	ALDH1A3	15	101438383	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	38406739	101438383	1093009	59	54573										
MEFV	0	genome.wustl.edu	37	chr16	3298943	3298943	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccttctcctccccataggatCgctgctcctcccctgatttt	5	18	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	16	3298943	3298943	C	A	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	missense	c.1322	p.R441L	0.394	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	192	0	0	142	47	24.87	-	-	-	A	3298943	C	A	3298943	3	1	629	1	0	0	0	0	1	0	0	0	9530	884	31	3	1051	3	MEFV	16	3298943	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		3298943	87055810	60	54574										
ZNF267	0	genome.wustl.edu	37	chr16	31927082	31927082	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ggcaaagtctttagccgtagTtcttgccttactcaacatcg	8	11	3	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	16	31927082	31927082	T	C	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	silent	c.1512	p.S504	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	97	0	0	37	13	26	-	-	-	C	31927082	T	C	31927082	2	2	629	1	0	0	0	0	0	0	0	1	17902	1722	60	5		5	ZNF267	16	31927082	Silent	SNP	T	TCGA-C8-A12Q-01A-11D-A10Y-09	28628139	31927082	58427671	61	54575										
SHCBP1	0	genome.wustl.edu	37	chr16	46633858	46633858	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ctcttttctatcacaatgtcAtctggtaggccatatcctaa	5	11	5	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	16	46633858	46633858	A	C	SNP	SHCBP1	ENST00000303383	human	ensembl	69_37n	-1	known	missense	c.1230	p.D410E	1.000	superfamily_Pectin_lyase_fold/virulence	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241	150	0	0	109	20	15.5	-	-	-	C	46633858	A	C	46633858	3	2	629	1	0	0	0	0	1	0	0	0	14363	214	8	5	808	5	SHCBP1	16	46633858	Missense_Mutation	SNP	A	TCGA-C8-A12Q-01A-11D-A10Y-09	14706776	46633858	43720895	62	54576										
N4BP1	0	genome.wustl.edu	37	chr16	48585301	48585301	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gaatggcctttcatacctgtCatcatgagaagcaattcttt	7	9	4	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	16	48585301	48585301	C	T	SNP	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	missense	c.2113	p.D705N	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	156	1	0.64	56	20	26.32	-	-	-	T	48585301	C	T	48585301	3	4	629	1	0	0	0	0	1	0	0	0	10181	826	29	2	593	2	N4BP1	16	48585301	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	1951443	48585301	41769452	63	54577										
PAPD5	0	genome.wustl.edu	37	chr16	50258849	50258849	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	agatgaagttgccacatataGagattggatatcaaagcagt	10	5	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	16	50258849	50258849	G	A	SNP	PAPD5	ENST00000436909	human	ensembl	69_37n	1	known	missense	c.1511	p.R504K	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD5	HGNC	ENSG00000121274	434	0	0	203	64	23.88	-	-	-	A	50258849	G	A	50258849	3	1	629	1	0	0	0	0	1	0	0	0	11498	942	33	2	1549	2	PAPD5	16	50258849	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1673548	50258849	40095904	64	54578										
TP53	0	genome.wustl.edu	37	chr17	7578236	7578236	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	agtgtttctgtcatccaaatActccacacgcaaatttcctt	4	12	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	17	7578236	7578236	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.613	p.Y205N	0.994	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	221	2	0.88	72	34	31.48	-	-	-	T	7578236	A	T	7578236	3	4	629	1	0	0	0	0	1	0	0	0	16477	391	14	5	681	5	TP53	17	7578236	Missense_Mutation	SNP	A	TCGA-C8-A12Q-01A-11D-A10Y-09		7578236	73616974	65	54579										
NFE2L1	0	genome.wustl.edu	37	chr17	46128581	46128581	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cgtggatacttacctgacctCacagcttcccccactccggg	8	17	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	17	46128581	46128581	C	G	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	nonsense	c.101	p.S34*	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	80	0	0	79	19	19.39	-	-	-	G	46128581	C	G	46128581	4	3	629	1	0	0	0	0	0	1	0	0	10439	838	29	2	103	2	NFE2L1	17	46128581	Nonsense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	38550345	46128581	35066629	66	54580										
ATP5A1	0	genome.wustl.edu	37	chr18	43668162	43668162	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	acagtacagcttcttcttttCatcagatccatcattgaaac	4	11	5	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	18	43668162	43668162	C	G	SNP	ATP5A1	ENST00000282050	human	ensembl	69_37n	-1	known	missense	c.712	p.E238Q	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234	306	0	0	134	45	25.14	-	-	-	G	43668162	C	G	43668162	3	3	629	1	0	0	0	0	1	0	0	0	1151	835	29	2	977	2	ATP5A1	18	43668162	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		43668162	34409086	67	54581										
ATP8B3	0	genome.wustl.edu	37	chr19	1796813	1796813	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ccgttggtccgcacgaggtgCagcagggccgcattgtggaa	16	11	0	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	1796813	1796813	C	A	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	silent	c.1650	p.L550	0.010	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	11	0	0	12	5	29.41	-	-	-	A	1796813	C	A	1796813	2	1	629	1	0	0	0	0	0	0	0	1	1200	697	25	4		4	ATP8B3	19	1796813	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		1796813	57332170	68	54582										
MATK	0	genome.wustl.edu	37	chr19	3784877	3784877	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	caggctcggaggaagcggggGctcacctggggaggggacag	21	9	1	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	3784877	3784877	G	C	SNP	MATK	ENST00000395045	human	ensembl	69_37n	-1	known	missense	c.81	p.S27R	0.229	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264	20	0	0	10	6	37.5	-	-	-	C	3784877	G	C	3784877	3	2	629	1	0	0	0	0	1	0	0	0	9403	1194	42	4	1493	4	MATK	19	3784877	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1988064	3784877	55344106	69	54583										
XAB2	0	genome.wustl.edu	37	chr19	7687717	7687717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tctccgcactgacaccacacGcttgccaggtcatccacctg	7	18	2	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	7687717	7687717	G	A	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	silent	c.1302	p.S434	0.980	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	26	0	0	24	12	33.33	-	-	-	A	7687717	G	A	7687717	2	1	629	1	0	0	0	0	0	0	0	1	17515	1078	38	1		1	XAB2	19	7687717	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	3902840	7687717	51441266	70	54584										
ZNF700	0	genome.wustl.edu	37	chr19	12059454	12059454	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgtggaaaaacctttattttCcattcaagcattcgaagaca	6	8	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	12059454	12059454	C	T	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	silent	c.615	p.F205	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	285	0	0	152	31	16.85	-	-	-	T	12059454	C	T	12059454	2	4	629	1	0	0	0	0	0	0	0	1	18200	854	30	2		2	ZNF700	19	12059454	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	4371737	12059454	47069529	71	54585										
HOOK2	0	genome.wustl.edu	37	chr19	12885536	12885536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gatgccctggagccatgcctCgttgaaccaggaggggtctc	14	12	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	12885536	12885536	C	T	SNP	HOOK2	ENST00000397668	human	ensembl	69_37n	-1	known	missense	c.151	p.E51K	0.999	pfam_HOOK	pfam_HOOK,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066	100	1	0.99	177	40	18.26	-	-	-	T	12885536	C	T	12885536	3	4	629	1	0	0	0	0	1	0	0	0	7334	893	31	1	2092	1	HOOK2	19	12885536	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	826082	12885536	46243447	72	54586										
CALR3	0	genome.wustl.edu	37	chr19	16593522	16593522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttctggagcatcggcgctggCcagtccccatccaggtcacc	11	16	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	16593522	16593522	C	A	SNP	CALR3	ENST00000269881	human	ensembl	69_37n	-1	known	missense	c.753	p.W251C	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000141979	51	0	0	79	20	20.2	-	-	-	A	16593522	C	A	16593522	3	1	629	1	0	0	0	0	1	0	0	0	2618	740	26	4	417	4	CALR3	19	16593522	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	3707986	16593522	42535461	73	54587										
ZNF85	0	genome.wustl.edu	37	chr19	21116931	21116931	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tatagaaatgtgatgttagaGaactacagaaacctggtctt	9	5	1	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	21116931	21116931	G	A	SNP	ZNF85	ENST00000328178	human	ensembl	69_37n	1	known	silent	c.105	p.E35	0.925	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750	394	0	0	186	41	18.06	-	-	-	A	21116931	G	A	21116931	2	1	629	1	0	0	0	0	0	0	0	1	18286	933	33	2		2	ZNF85	19	21116931	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	4523409	21116931	38012052	74	54588										
ZNF208	0	genome.wustl.edu	37	chr19	22155448	22155448	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ttctcatcagtatgaattctCttatgtttaataaggattgc	6	6	3	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	22155448	22155448	C	T	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.2388	p.K796	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	147	0	0	60	16	21.05	-	-	-	T	22155448	C	T	22155448	2	4	629	1	0	0	0	0	0	0	0	1	17862	912	32	2		2	ZNF208	19	22155448	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	1038517	22155448	36973535	75	54589										
PSG6	0	genome.wustl.edu	37	chr19	43414651	43414651	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aggtctctgtacttggacctGagagggactgagaggcctgg	16	8	1	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	43414651	43414651	G	C	SNP	PSG6	ENST00000402456	human	ensembl	69_37n	-1	putative	missense	c.787	p.Q263E	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	28	0	0	21	20	48.78	-	-	-	C	43414651	G	C	43414651	3	2	629	1	0	0	0	0	1	0	0	0	12739	1305	45	2		2	PSG6	19	43414651	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	21259203	43414651	15714332	76	54590										
RTN2	0	genome.wustl.edu	37	chr19	45992785	45992785	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gaccactcctgacgtcctcgTgtccttccagtacagcaggt	9	15	0	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	45992785	45992785	T	C	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	missense	c.1060	p.T354A	0.597	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	26	0	0	10	5	33.33	-	-	-	C	45992785	T	C	45992785	3	2	629	1	0	0	0	0	1	0	0	0	13812	1696	59	5	601	5	RTN2	19	45992785	Missense_Mutation	SNP	T	TCGA-C8-A12Q-01A-11D-A10Y-09	2578134	45992785	13136198	77	54591										
ZNF611	0	genome.wustl.edu	37	chr19	53209290	53209290	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	attacacttgtaaggattttCtccagtatcaattgccttat	5	8	2	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	53209290	53209290	C	G	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.1018	p.E340Q	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	196	0	0	110	40	26.67	-	-	-	G	53209290	C	G	53209290	3	3	629	1	0	0	0	0	1	0	0	0	18133	922	32	2	1103	2	ZNF611	19	53209290	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	7216505	53209290	5919693	78	54592										
GP6	0	genome.wustl.edu	37	chr19	55526128	55526128	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cagacagacagacactggccGaacggctccctgatggaaca	11	13	0	4			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	55526128	55526128	G	A	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	silent	c.1185	p.F395	0.001	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	41	0	0	45	13	22.41	-	-	-	A	55526128	G	A	55526128	2	1	629	1	0	0	0	0	0	0	0	1	6634	1049	37	1		1	GP6	19	55526128	Silent	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	2316838	55526128	3602855	79	54593										
PEG3	0	genome.wustl.edu	37	chr19	57326917	57326917	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	acattcatagagcatccctcGagggcgaaatgtttgttcac	9	10	2	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	19	57326917	57326917	G	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	nonsense	c.2893	p.R965*	0.983	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	158	0	0	101	37	26.62	-	-	-	A	57326917	G	A	57326917	4	1	629	1	0	0	0	0	0	1	0	0	11793	1066	37	1	1877	1	PEG3	19	57326917	Nonsense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1800789	57326917	1802066	80	54594										
DTD1	0	genome.wustl.edu	37	chr20	18724832	18724832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	caaggaaagaaacactccccGaaaagaagaccgcagtgcca	9	12	0	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	20	18724832	18724832	G	A	SNP	DTD1	ENST00000377452	human	ensembl	69_37n	1	known	missense	c.566	p.R189Q	0.904	NULL	pfam_DTyrtRNA_deacyls,superfamily_DTD-like_dom,tigrfam_DTyrtRNA_deacyls	-	no_errors	DTD1	HGNC	ENSG00000125821	108	0	0	35	68	66.02	-	-	-	A	18724832	G	A	18724832	3	1	629	1	0	0	0	0	1	0	0	0	4821	1058	37	1	584	1	DTD1	20	18724832	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		18724832	44300688	81	54595										
SULF2	0	genome.wustl.edu	37	chr20	46385992	46385992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgttggggcggatgttcctgCggtccctctgaaacctgcct	13	12	1	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	20	46385992	46385992	C	T	SNP	SULF2	ENST00000359930	human	ensembl	69_37n	-1	known	missense	c.116	p.R39H	1.000	pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562	24	0	0	45	13	22.03	-	-	-	T	46385992	C	T	46385992	3	4	629	1	0	0	0	0	1	0	0	0	15462	768	27	1	2576	1	SULF2	20	46385992	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	27661160	46385992	16639528	82	54596										
ZNF280B	0	genome.wustl.edu	37	chr22	22842274	22842274	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	cttaggcttcttaaacatttGatgacactgggtcttgtgct	9	8	2	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	22842274	22842274	G	A	SNP	ZNF280B	ENST00000360412	human	ensembl	69_37n	-1	known	nonsense	c.1450	p.Q484*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477	224	0	0	339	165	32.74	-	-	-	A	22842274	G	A	22842274	4	1	629	1	0	0	0	0	0	1	0	0	17911	1299	45	2	185	2	ZNF280B	22	22842274	Nonsense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09		22842274	28462292	83	54597										
ZNF280B	0	genome.wustl.edu	37	chr22	22843589	22843589	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tttgaagtcaccccaacaaaGattagctcagcatcttcatt	5	11	4	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	22843589	22843589	G	C	SNP	ZNF280B	ENST00000360412	human	ensembl	69_37n	-1	known	missense	c.135	p.I45M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477	261	0	0	445	232	34.22	-	-	-	C	22843589	G	C	22843589	3	2	629	1	0	0	0	0	1	0	0	0	17911	932	33	2	1500	2	ZNF280B	22	22843589	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1315	22843589	28460977	84	54598										
PRAME	0	genome.wustl.edu	37	chr22	22892625	22892625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tgctcaaaccatctacttttCgcttctttgtcatgggctga	7	11	4	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	22892625	22892625	C	T	SNP	PRAME	ENST00000398741	human	ensembl	69_37n	-1	known	missense	c.476	p.R159Q	0.000	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	117	0	0	217	120	35.61	-	-	-	T	22892625	C	T	22892625	3	4	629	1	0	0	0	0	1	0	0	0	12501	884	31	1	1061	1	PRAME	22	22892625	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	49036	22892625	28411941	85	54599										
SLC2A11	0	genome.wustl.edu	37	chr22	24210689	24210689	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	acattcaggaattcaccaatGagacatggcaggcgcgtact	10	10	2	1			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	24210689	24210689	G	T	SNP	SLC2A11	ENST00000398356	human	ensembl	69_37n	1	known	nonsense	c.163	p.E55*	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A11	HGNC	ENSG00000133460	83	0	0	241	41	14.49	-	-	-	T	24210689	G	T	24210689	4	4	629	1	0	0	0	0	0	1	0	0	14629	1291	45	2	232	2	SLC2A11	22	24210689	Nonsense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	1318064	24210689	27093877	86	54600										
XBP1	0	genome.wustl.edu	37	chr22	29191398	29191399	+	Frame_Shift_Del	DEL	AC	AC	-													0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	caggttcttccttcactgagAcaatgaattcagggtgatca							TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	29191398	29191399	AC	-	DEL	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	frame_shift_del	c.896_895	p.V299fs	1.000:1.000	NULL	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	156	0	0	113	22	16.3	-	-	-	-	29191399	AC	-	29191398	7	5	629	1	0	1	0	1	0	0	0	0	17519	275	10	0	238	0	XBP1	22	29191398	Frame_Shift_Del	DEL	AC	TCGA-C8-A12Q-01A-11D-A10Y-09	4980709	29191398	22113168	87	54601										
EIF3L	0	genome.wustl.edu	37	chr22	38266249	38266249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aggaggagattgactttcttCgttccaatcccaaaatctgg	9	9	2	2			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	38266249	38266249	C	T	SNP	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	missense	c.775	p.R259C	1.000	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	331	0	0	193	69	26.34	-	-	-	T	38266249	C	T	38266249	3	4	629	1	0	0	0	0	1	0	0	0	5059	884	31	1	676	1	EIF3L	22	38266249	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	9074851	38266249	13038317	88	54602										
XRCC6	0	genome.wustl.edu	37	chr22	42018039	42018039	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	gggagtcatattacaaaaccGagggcgatgaagaagcagag	14	6	1	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	42018039	42018039	G	C	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	1	known	missense	c.31	p.E11Q	0.972	pirsf_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	307	0	0	255	82	24.26	-	-	-	C	42018039	G	C	42018039	3	2	629	1	0	0	0	0	1	0	0	0	17554	1059	37	3	33	3	XRCC6	22	42018039	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	3751790	42018039	9286527	89	54603										
XRCC6	0	genome.wustl.edu	37	chr22	42024199	42024199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	ctatgtttgaatctcagagtGaagatgagttgacacctttt	9	6	1	6			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	22	42024199	42024199	G	A	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	1	known	missense	c.160	p.E54K	1.000	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,tigrfam_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	464	0	0	191	50	20.75	-	-	-	A	42024199	G	A	42024199	3	1	629	1	0	0	0	0	1	0	0	0	17554	1291	45	2	166	2	XRCC6	22	42024199	Missense_Mutation	SNP	G	TCGA-C8-A12Q-01A-11D-A10Y-09	6160	42024199	9280367	90	54604										
SYAP1	0	genome.wustl.edu	37	chrX	16774820	16774820	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	aaaacgccacccgttgtaatCaaatctcagcttaaaactca	4	12	3	0			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	X	16774820	16774820	C	A	SNP	SYAP1	ENST00000380155	human	ensembl	69_37n	1	known	silent	c.759	p.I253	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895	215	0	0	76	35	31.25	-	-	-	A	16774820	C	A	16774820	2	1	629	1	0	0	0	0	0	0	0	1	15517	816	29	2		2	SYAP1	23	16774820	Silent	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09		16774820	138495740	91	54605										
AFF2	0	genome.wustl.edu	37	chrX	147743846	147743846	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.41304347826087	38	1.2692051724544e-11	3.35476739715494	4.50245098039216	2.87656590413943	0.134735826901388	0.62934362934363	27	tggaagacttctttgtctacCcagctgaacagccccagatt	8	12	2	3			TCGA-C8-A12Q-01A-11D-A10Y-09	TCGA-C8-A12Q-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4	c393110b-afe2-4838-bc8f-998ca23058d9	X	147743846	147743846	C	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.598	p.P200T	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	114	0	0	56	27	32.53	-	-	-	A	147743846	C	A	147743846	3	1	629	1	0	0	0	0	1	0	0	0	357	623	22	4	608	4	AFF2	23	147743846	Missense_Mutation	SNP	C	TCGA-C8-A12Q-01A-11D-A10Y-09	130969026	147743846	7526714	92	54606										
SLC45A1	0	genome.wustl.edu	37	chr1	8395594	8395594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gtccgtggggcgcctctgctCcaccatctgcaacatgccca	10	17	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	8395594	8395594	C	A	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	1	known	missense	c.1643	p.S548Y	0.675	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	76	0	0	33	13	28.26	-	-	-	A	8395594	C	A	8395594	3	1	630	1	0	0	0	0	1	0	0	0	14729	855	30	2	1559	2	SLC45A1	1	8395594	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		8395594	240855027	1	54607										
ARID1A	0	genome.wustl.edu	37	chr1	27057874	27057874	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agccatcccagcctccacatCagcagtccccggctccatac	6	20	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	27057874	27057874	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.1582	p.Q528*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	592	0	0	265	78	22.61	-	-	-	T	27057874	C	T	27057874	4	4	630	1	0	0	0	0	0	1	0	0	915	827	29	2	1592	2	ARID1A	1	27057874	Nonsense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	18662280	27057874	222192747	2	54608										
FGR	0	genome.wustl.edu	37	chr1	27939603	27939603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gcatgtggtagccctgctccAcctgttccaacacttcccgt	8	16	0	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	27939603	27939603	A	C	SNP	FGR	ENST00000374003	human	ensembl	69_37n	-1	known	missense	c.1412	p.V471G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FGR	HGNC	ENSG00000000938	86	0	0	38	5	11.11	-	-	-	C	27939603	A	C	27939603	3	2	630	1	0	0	0	0	1	0	0	0	5920	159	6	5	181	5	FGR	1	27939603	Missense_Mutation	SNP	A	TCGA-C8-A12T-01A-11D-A10Y-09	881729	27939603	221311018	3	54609										
MACF1	0	genome.wustl.edu	37	chr1	39751334	39751334	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tgagtcagatgtcattatgtAcattcaggagtgtgaaggtc	12	5	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	39751334	39751334	A	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.1427	p.Y476F	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	141	0	0	54	30	35.71	-	-	-	T	39751334	A	T	39751334	3	4	630	1	0	0	0	0	1	0	0	0	9211	391	14	5	1477	5	MACF1	1	39751334	Missense_Mutation	SNP	A	TCGA-C8-A12T-01A-11D-A10Y-09	11811731	39751334	209499287	4	54610										
MAST2	0	genome.wustl.edu	37	chr1	46488611	46488611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agttgagcagctgtgacagtCctgacactccagagacagat	11	10	0	5			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	46488611	46488611	C	G	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.1453	p.P485A	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	221	0	0	104	38	26.76	-	-	-	G	46488611	C	G	46488611	3	3	630	1	0	0	0	0	1	0	0	0	9396	855	30	2	1503	2	MAST2	1	46488611	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	6737277	46488611	202762010	5	54611										
SARS	0	genome.wustl.edu	37	chr1	109779045	109779045	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atgctgccagtaagaagcttGacctggaggcctggtttccg	13	10	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	109779045	109779045	G	T	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	missense	c.1132	p.D378Y	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	76	0	0	65	18	21.69	-	-	-	T	109779045	G	T	109779045	3	4	630	1	0	0	0	0	1	0	0	0	13931	1290	45	2	1166	2	SARS	1	109779045	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	63290434	109779045	139471576	6	54612										
PTPN22	0	genome.wustl.edu	37	chr1	114397122	114397122	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tagcaacatccatgtataatCaatagcacaaataacaccag	4	10	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	114397122	114397122	C	A	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.721	p.D241Y	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	165	0	0	94	16	14.41	-	-	-	A	114397122	C	A	114397122	3	1	630	1	0	0	0	0	1	0	0	0	12870	826	29	2	1777	2	PTPN22	1	114397122	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	4618077	114397122	134853499	7	54613										
CSDE1	0	genome.wustl.edu	37	chr1	115276687	115276687	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acccttaaattcactatagtGaaagaatatctcttttacaa	3	8	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	115276687	115276687	G	A	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.679	p.H227Y	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	97	0	0	67	18	21.18	-	-	-	A	115276687	G	A	115276687	3	1	630	1	0	0	0	0	1	0	0	0	3961	1290	45	2	1814	2	CSDE1	1	115276687	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	879565	115276687	133973934	8	54614										
ASH1L	0	genome.wustl.edu	37	chr1	155450397	155450397	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcataaacttggctggctcaGaattactatttgatagtgag	9	6	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	155450397	155450397	G	C	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.2264	p.S755C	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	73	0	0	54	22	28.95	-	-	-	C	155450397	G	C	155450397	3	2	630	1	0	0	0	0	1	0	0	0	1045	942	33	2	6734	2	ASH1L	1	155450397	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	40173710	155450397	93800224	9	54615										
IQGAP3	0	genome.wustl.edu	37	chr1	156530801	156530801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctccttttccagaagctccaCcaggcccagctcctaagaga	7	16	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	156530801	156530801	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.1054	p.V352M	0.892	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	147	0	0	41	15	26.79	-	-	-	T	156530801	C	T	156530801	3	4	630	1	0	0	0	0	1	0	0	0	7870	507	18	4	3953	4	IQGAP3	1	156530801	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	1080404	156530801	92719820	10	54616										
C1orf114	0	genome.wustl.edu	37	chr1	169390881	169390881	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctttcttggtgccactgacaGaggagttggaagatctgggt	14	7	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	169390881	169390881	G	T	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.788	p.S263Y	0.008	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	188	0	0	111	40	26.49	-	-	-	T	169390881	G	T	169390881	3	4	630	1	0	0	0	0	1	0	0	0	2006	942	33	2	754	2	C1orf114	1	169390881	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	12860080	169390881	79859740	11	54617										
CACNA1E	0	genome.wustl.edu	37	chr1	181680184	181680184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agcgtgagctgaatggctacCgtgcctggatagacaaagca	13	9	0	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	181680184	181680184	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1150	p.R384C	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	60	0	0	22	12	34.29	-	-	-	T	181680184	C	T	181680184	3	4	630	1	0	0	0	0	1	0	0	0	2567	652	23	1	1180	1	CACNA1E	1	181680184	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	12289303	181680184	67570437	12	54618										
ASPM	0	genome.wustl.edu	37	chr1	197061060	197061060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aatacagatgactgaattaaCctgcttgttagcattcttca	6	8	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	197061060	197061060	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.9421	p.V3141I	0.000	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	95	0	0	97	11	10.19	-	-	-	T	197061060	C	T	197061060	3	4	630	1	0	0	0	0	1	0	0	0	1060	507	18	4	1040	4	ASPM	1	197061060	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	15380876	197061060	52189561	13	54619										
SDCCAG8	0	genome.wustl.edu	37	chr1	243579083	243579083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aggcccagcaaagagagcagGagctgacacagaagatacag	13	9	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	243579083	243579083	G	A	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.1696	p.E566K	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	112	0	0	91	21	18.58	-	-	-	A	243579083	G	A	243579083	3	1	630	1	0	0	0	0	1	0	0	0	14047	1175	41	2	1750	2	SDCCAG8	1	243579083	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	46518023	243579083	5671538	14	54620										
NLRP3	0	genome.wustl.edu	37	chr1	247587541	247587541	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tccactgtcgagaggtgagcCttgtgacacagaggagcctg	14	10	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	1	247587541	247587541	C	G	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.796	p.L266V	0.913	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	50	0	0	32	8	20	-	-	-	G	247587541	C	G	247587541	3	3	630	1	0	0	0	0	1	0	0	0	10550	681	24	4	806	4	NLRP3	1	247587541	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	4008458	247587541	1663080	15	54621										
FAM49A	0	genome.wustl.edu	37	chr2	16740779	16740779	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acagggtggacatggtcataGaggatgatgactcccaccat	12	9	1	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	16740779	16740779	G	C	SNP	FAM49A	ENST00000355549	human	ensembl	69_37n	-1	known	silent	c.786	p.L262	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872	150	0	0	69	26	27.37	-	-	-	C	16740779	G	C	16740779	2	2	630	1	0	0	0	0	0	0	0	1	5621	929	33	2		2	FAM49A	2	16740779	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		16740779	226458594	16	54622										
VRK2	0	genome.wustl.edu	37	chr2	58350248	58350248	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcttccaggtttatcttgcaGattatggactttcctacaga	7	9	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	58350248	58350248	G	C	SNP	VRK2	ENST00000340157	human	ensembl	69_37n	1	known	missense	c.556	p.D186H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK2	HGNC	ENSG00000028116	157	0	0	89	29	24.58	-	-	-	C	58350248	G	C	58350248	3	2	630	1	0	0	0	0	1	0	0	0	17317	942	33	2	582	2	VRK2	2	58350248	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	41609469	58350248	184849125	17	54623										
TMEM131	0	genome.wustl.edu	37	chr2	98543924	98543924	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atcatcaaaacgcagtacttCtattatgctctctgactgaa	5	10	4	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	98543924	98543924	C	G	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.214	p.E72Q	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	71	0	0	90	27	23.08	-	-	-	G	98543924	C	G	98543924	3	3	630	1	0	0	0	0	1	0	0	0	16139	922	32	2	5597	2	TMEM131	2	98543924	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	40193676	98543924	144655449	18	54624										
NEB	0	genome.wustl.edu	37	chr2	152350381	152350381	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caggttctctttgtataacaCctgtgagatacaaagtcatg	8	8	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	152350381	152350381	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.24580	p.V8194L	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	158	0	0	84	46	35.38	-	-	-	G	152350381	C	G	152350381	3	3	630	1	0	0	0	0	1	0	0	0	10374	521	18	4	1029	4	NEB	2	152350381	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	53806457	152350381	90848992	19	54625										
UBR3	0	genome.wustl.edu	37	chr2	170732316	170732316	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tttagcagctgatggaccatCagaaaaggaccttaacaaag	9	8	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	170732316	170732316	C	G	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	nonsense	c.701	p.S234*	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	82	0	0	44	5	10.2	-	-	-	G	170732316	C	G	170732316	4	3	630	1	0	0	0	0	0	1	0	0	17000	838	29	2	711	2	UBR3	2	170732316	Nonsense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	18381935	170732316	72467057	20	54626										
CLK1	0	genome.wustl.edu	37	chr2	201722462	201722462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	attcacagacttgcatatctGatatgccatctttctgatat	5	9	4	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	2	201722462	201722462	G	C	SNP	CLK1	ENST00000321356	human	ensembl	69_37n	-1	known	missense	c.811	p.Q271E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK1	HGNC	ENSG00000013441	69	0	0	56	20	25.97	-	-	-	C	201722462	G	C	201722462	3	2	630	1	0	0	0	0	1	0	0	0	3566	1299	45	2	671	2	CLK1	2	201722462	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	30990146	201722462	41476911	21	54627										
TBC1D5	0	genome.wustl.edu	37	chr3	17208372	17208372	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctgttcgttctcttcggcctCtagctggctctggttaaaac	9	12	3	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	17208372	17208372	C	G	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	missense	c.1981	p.E661Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	136	0	0	104	37	26.24	-	-	-	G	17208372	C	G	17208372	3	3	630	1	0	0	0	0	1	0	0	0	15718	922	32	2	414	2	TBC1D5	3	17208372	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		17208372	180814058	22	54628										
OSBPL10	0	genome.wustl.edu	37	chr3	31712404	31712404	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctccacccacgggatggtgaGaatggaccgggcgtaggcac	15	12	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	31712404	31712404	G	C	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	missense	c.1798	p.L600V	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	206	0	0	80	10	11.11	-	-	-	C	31712404	G	C	31712404	3	2	630	1	0	0	0	0	1	0	0	0	11348	942	33	2	512	2	OSBPL10	3	31712404	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	14504032	31712404	166310026	23	54629										
GABRR3	0	genome.wustl.edu	37	chr3	97731406	97731406	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctgagataaaaagtcattgtAaagtcctagacagagagaaa	9	5	1	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	97731406	97731406	A	G	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	silent	c.312	p.F104	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	118	0	0	70	36	33.96	-	-	-	G	97731406	A	G	97731406	2	3	630	1	0	0	0	0	0	0	0	1	6227	359	13	5		5	GABRR3	3	97731406	Silent	SNP	A	TCGA-C8-A12T-01A-11D-A10Y-09	66019002	97731406	100291024	24	54630										
ROPN1B	0	genome.wustl.edu	37	chr3	125701143	125701143	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aaactctcaagatagtgtgtGaggtcttatcatgtgaccac	9	8	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	125701143	125701143	G	A	SNP	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	missense	c.427	p.E143K	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	209	0	0	115	26	18.44	-	-	-	A	125701143	G	A	125701143	3	1	630	1	0	0	0	0	1	0	0	0	13610	1291	45	2	441	2	ROPN1B	3	125701143	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	27969737	125701143	72321287	25	54631										
DNAJC13	0	genome.wustl.edu	37	chr3	132231857	132231857	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	attcttattctctaggttctGagagtgaatgcattgggcac	10	7	3	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	132231857	132231857	G	C	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.5299	p.E1767Q	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	338	0	0	259	57	17.98	-	-	-	C	132231857	G	C	132231857	3	2	630	1	0	0	0	0	1	0	0	0	4667	1291	45	2	5473	2	DNAJC13	3	132231857	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	6530714	132231857	65790573	26	54632										
MSL2	0	genome.wustl.edu	37	chr3	135871199	135871199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gggtgctttcagacattggaGataaactagcttgaggatca	12	6	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	135871199	135871199	G	A	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	missense	c.524	p.S175F	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	132	0	0	78	16	17.02	-	-	-	A	135871199	G	A	135871199	3	1	630	1	0	0	0	0	1	0	0	0	9950	942	33	2	1213	2	MSL2	3	135871199	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	3639342	135871199	62151231	27	54633										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	81	0	0	73	43	37.07	-	-	-	A	178936082	G	A	178936082	3	1	630	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	43064883	178936082	19086348	28	54634										
TRA2B	0	genome.wustl.edu	37	chr3	185639893	185639893	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cctacgcccatcaagctccaTtccattggcacgttctttag	6	15	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	3	185639893	185639893	T	A	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	missense	c.544	p.M182L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	259	0	0	121	69	36.13	-	-	-	A	185639893	T	A	185639893	3	1	630	1	0	0	0	0	1	0	0	0	16530	1493	52	5	342	5	TRA2B	3	185639893	Missense_Mutation	SNP	T	TCGA-C8-A12T-01A-11D-A10Y-09	6703811	185639893	12382537	29	54635										
SLIT2	0	genome.wustl.edu	37	chr4	20487849	20487849	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caacaataacaacattactaGactttctgtggcaagtttca	5	9	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	4	20487849	20487849	G	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.566	p.R189I	0.995	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	120	0	0	122	33	21.15	-	-	-	T	20487849	G	T	20487849	3	4	630	1	0	0	0	0	1	0	0	0	14829	942	33	2	592	2	SLIT2	4	20487849	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		20487849	170666427	30	54636										
GK2	0	genome.wustl.edu	37	chr4	80329028	80329028	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcaagccacaccacagcattGtagagaggctctcctgttaa	8	12	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	4	80329028	80329028	G	T	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	nonsense	c.327	p.Y109*	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	218	0	0	102	34	25	-	-	-	T	80329028	G	T	80329028	4	4	630	1	0	0	0	0	0	1	0	0	6473	1372	48	4	1338	4	GK2	4	80329028	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	59841179	80329028	110825248	31	54637										
PCDH18	0	genome.wustl.edu	37	chr4	138442365	138442365	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agaaggctgcacactggagtGagttccaagtggcggcccac	14	11	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	4	138442365	138442365	G	A	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.3226	p.H1076Y	0.984	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	68	0	0	29	8	21.62	-	-	-	A	138442365	G	A	138442365	3	1	630	1	0	0	0	0	1	0	0	0	11586	1290	45	2	185	2	PCDH18	4	138442365	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	58113337	138442365	52711911	32	54638										
PCDH18	0	genome.wustl.edu	37	chr4	138452906	138452906	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctgcagatgctctgtgggtaGagtgatcacatcaaactcta	10	9	4	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	4	138452906	138452906	G	A	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	silent	c.337	p.L113	0.981	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	107	0	0	71	13	15.48	-	-	-	A	138452906	G	A	138452906	2	1	630	1	0	0	0	0	0	0	0	1	11586	933	33	2		2	PCDH18	4	138452906	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	10541	138452906	52701370	33	54639										
EGFLAM	0	genome.wustl.edu	37	chr5	38407978	38407978	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aacctctgaagaattcttatCaggcatttcaaattactctt	4	9	5	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	5	38407978	38407978	C	G	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	missense	c.1219	p.Q407E	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	336	0	0	273	68	19.88	-	-	-	G	38407978	C	G	38407978	3	3	630	1	0	0	0	0	1	0	0	0	5001	827	29	2	1267	2	EGFLAM	5	38407978	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		38407978	142507282	34	54640										
PCDHB8	0	genome.wustl.edu	37	chr5	140559532	140559532	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gagcgcgacgcggccaagcaGaggctggtggtgctggtcaa	18	10	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	5	140559532	140559532	G	C	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.1917	p.Q639H	0.980	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	11	0	0	4	4	50	-	-	-	C	140559532	G	C	140559532	3	2	630	1	0	0	0	0	1	0	0	0	11621	933	33	2	1919	2	PCDHB8	5	140559532	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	102151554	140559532	40355728	35	54641										
EYS	0	genome.wustl.edu	37	chr6	65300723	65300723	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tttgaagtcaaatcagaattCatcaagtctgaagagatagt	8	5	5	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	6	65300723	65300723	C	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.5037	p.M1679I	0.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	91	0	0	64	19	22.89	-	-	-	T	65300723	C	T	65300723	3	4	630	1	0	0	0	0	1	0	0	0	5369	826	29	2	4314	2	EYS	6	65300723	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		65300723	105814344	36	54642										
PHIP	0	genome.wustl.edu	37	chr6	79688311	79688311	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttaaaacttttaaagtacctCatcacccatctgtggcacaa	4	11	3	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	6	79688311	79688311	C	T	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.2887	p.E963K	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	104	0	0	79	17	17.71	-	-	-	T	79688311	C	T	79688311	3	4	630	1	0	0	0	0	1	0	0	0	11916	835	29	2	2646	2	PHIP	6	79688311	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	14387588	79688311	91426756	37	54643										
AMD1	0	genome.wustl.edu	37	chr6	111214197	111214197	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acttaagtcagacctcctatGatgacctgatcaggaaagtt	8	9	2	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	6	111214197	111214197	G	A	SNP	AMD1	ENST00000368885	human	ensembl	69_37n	1	known	missense	c.793	p.D265N	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505	97	0	0	75	24	24.24	-	-	-	A	111214197	G	A	111214197	3	1	630	1	0	0	0	0	1	0	0	0	566	1290	45	2	823	2	AMD1	6	111214197	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	31525886	111214197	59900870	38	54644										
PERP	0	genome.wustl.edu	37	chr6	138417551	138417551	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aagcatctggggtccacagaGggcgaagaaggagaggatga	17	6	1	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	6	138417551	138417551	G	C	SNP	PERP	ENST00000421351	human	ensembl	69_37n	-1	known	missense	c.295	p.L99V	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	PERP	HGNC	ENSG00000112378	105	0	0	62	13	17.33	-	-	-	C	138417551	G	C	138417551	3	2	630	1	0	0	0	0	1	0	0	0	11805	1000	35	4	294	4	PERP	6	138417551	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	27203354	138417551	32697516	39	54645										
SNX13	0	genome.wustl.edu	37	chr7	17980008	17980008	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	actgctcgggccgccgccaaCggcggcaactgctccttcag	12	17	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	17980008	17980008	C	T	SNP	SNX13	ENST00000471744	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SNX13	HGNC	ENSG00000071189	35	0	0	18	8	30.77	-	-	-	T	17980008	C	T	17980008	1	4	630	0	1	0	0	0	0	0	0	0	14973	551	19	1		1	SNX13	7	17980008	RNA	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		17980008	141158655	40	54646										
ABCB5	0	genome.wustl.edu	37	chr7	20793123	20793123	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcagccctcgataatgacagTgagaaggtaacatcattttc	8	9	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	20793123	20793123	T	C	SNP	ABCB5	ENST00000258738	human	ensembl	69_37n	1	known	silent	c.2235	p.S745	0.995	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	106	0	0	49	32	39.51	-	-	-	C	20793123	T	C	20793123	2	2	630	1	0	0	0	0	0	0	0	1	44	1693	59	5		5	ABCB5	7	20793123	Silent	SNP	T	TCGA-C8-A12T-01A-11D-A10Y-09	2813115	20793123	138345540	41	54647										
MAGI2	0	genome.wustl.edu	37	chr7	77789588	77789588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cccgttctctgggcagggctCccctgcaaaatataccacac	8	16	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	77789588	77789588	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.2599	p.E867K	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	116	0	0	43	15	25.86	-	-	-	T	77789588	C	T	77789588	3	4	630	1	0	0	0	0	1	0	0	0	9262	864	30	2	1796	2	MAGI2	7	77789588	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	56996465	77789588	81349075	42	54648										
MUC17	0	genome.wustl.edu	37	chr7	100679922	100679922	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aggtaccagcatgccaaactCaactcctagtgaaggaacca	8	12	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	100679922	100679922	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	nonsense	c.5225	p.S1742*	0.038	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	396	0	0	126	22	14.86	-	-	-	G	100679922	C	G	100679922	4	3	630	1	0	0	0	0	0	1	0	0	10046	838	29	2	5235	2	MUC17	7	100679922	Nonsense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	22890334	100679922	58458741	43	54649										
MUC17	0	genome.wustl.edu	37	chr7	100681224	100681224	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caccacagtggtggccagttCtgcaatcagcaccctttcaa	8	14	3	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	100681224	100681224	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6527	p.S2176C	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	289	0	0	102	36	26.09	-	-	-	G	100681224	C	G	100681224	3	3	630	1	0	0	0	0	1	0	0	0	10046	913	32	2	6537	2	MUC17	7	100681224	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	1302	100681224	58457439	44	54650										
DNAJC2	0	genome.wustl.edu	37	chr7	102982252	102982252	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tgttttcagcatgggaaactCttccaactgcaattcttcat	6	10	4	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	102982252	102982252	C	G	SNP	DNAJC2	ENST00000379263	human	ensembl	69_37n	-1	known	missense	c.214	p.E72Q	1.000	superfamily_DnaJ_N	pfam_SANT/Myb,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N	-	no_errors	DNAJC2	HGNC	ENSG00000105821	133	0	0	73	31	29.52	-	-	-	G	102982252	C	G	102982252	3	3	630	1	0	0	0	0	1	0	0	0	4674	922	32	2	1715	2	DNAJC2	7	102982252	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2301028	102982252	56156411	45	54651										
THAP5	0	genome.wustl.edu	37	chr7	108205254	108205254	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aacatgtgtgaaaaccacctCtacctgtatcttggttaact	6	10	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	108205254	108205254	C	G	SNP	THAP5	ENST00000415914	human	ensembl	69_37n	-1	known	missense	c.569	p.R190T	0.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP5	HGNC	ENSG00000177683	113	0	0	108	13	10.66	-	-	-	G	108205254	C	G	108205254	3	3	630	1	0	0	0	0	1	0	0	0	15942	913	32	2	622	2	THAP5	7	108205254	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	5223002	108205254	50933409	46	54652										
LRGUK	0	genome.wustl.edu	37	chr7	133886232	133886232	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aatgtactctctttgctgcaGatgatctggatgttgcctac	9	9	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	133886232	133886232	G	A	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	1	known	splice_site	c.1748-1	e15-1	1.000	-	-	-	no_errors	LRGUK	HGNC	ENSG00000155530	145	0	0	69	38	35.51	-	-	-	A	133886232	G	A	133886232	5	1	630	1	0	0	0	0	0	0	1	0	9009	956	33	2	1805	2	LRGUK	7	133886232	Splice_Site	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	25680978	133886232	25252431	47	54653										
ABCB8	0	genome.wustl.edu	37	chr7	150731848	150731848	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttgacgccaataagacagggCagctggtgagccgcttgaca	13	10	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	7	150731848	150731848	C	A	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	1	known	missense	c.748	p.Q250K	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	205	0	0	55	26	32.1	-	-	-	A	150731848	C	A	150731848	3	1	630	1	0	0	0	0	1	0	0	0	47	711	25	4	715	4	ABCB8	7	150731848	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	16845616	150731848	8406815	48	54654										
ZDHHC2	0	genome.wustl.edu	37	chr8	17067946	17067946	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gccttgttaaccaggatcctGaacaagcatctactcctgca	7	13	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	17067946	17067946	G	A	SNP	ZDHHC2	ENST00000262096	human	ensembl	69_37n	1	known	missense	c.907	p.E303K	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC2	HGNC	ENSG00000104219	107	0	0	116	30	20.55	-	-	-	A	17067946	G	A	17067946	3	1	630	1	0	0	0	0	1	0	0	0	17706	1291	45	2	945	2	ZDHHC2	8	17067946	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		17067946	129296076	49	54655										
XPO7	0	genome.wustl.edu	37	chr8	21861537	21861537	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atcttcttacgaaaaacagaGacaggtgagtataaagcgtc	9	7	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	21861537	21861537	G	C	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	missense	c.3193	p.D1065H	1.000	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	110	0	0	92	30	24.59	-	-	-	C	21861537	G	C	21861537	3	2	630	1	0	0	0	0	1	0	0	0	17546	942	33	2	3324	2	XPO7	8	21861537	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4793591	21861537	124502485	50	54656										
PTK2B	0	genome.wustl.edu	37	chr8	27296585	27296585	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acatcctggtggcctcccctGagtgtgtgaagctgggggac	15	11	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	27296585	27296585	G	C	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	missense	c.1681	p.E561Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	204	0	0	136	19	12.26	-	-	-	C	27296585	G	C	27296585	3	2	630	1	0	0	0	0	1	0	0	0	12844	1291	45	2	1751	2	PTK2B	8	27296585	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	5435048	27296585	119067437	51	54657										
PXDNL	0	genome.wustl.edu	37	chr8	52321106	52321106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	taacccctcagcatcctagtGccagggtcccccaggacctt	8	17	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	52321106	52321106	G	T	SNP	PXDNL	ENST00000522933	human	ensembl	69_37n	-1	novel	missense	c.434	p.A145E	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_VWF_C,superfamily_Haem_peroxidase,smart_VWF_C,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PXDNL	HGNC	ENSG00000147485	55	0	0	25	14	35.9	-	-	-	T	52321106	G	T	52321106	3	4	630	1	0	0	0	0	1	0	0	0	12931	1306	46	4	1341	4	PXDNL	8	52321106	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	25024521	52321106	94042916	52	54658										
ST18	0	genome.wustl.edu	37	chr8	53071507	53071507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agaggatgtctgtggcttccCtgcagcgggtggaaaggttc	16	8	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	53071507	53071507	C	A	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.1757	p.R586M	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	209	0	0	118	23	16.2	-	-	-	A	53071507	C	A	53071507	3	1	630	1	0	0	0	0	1	0	0	0	15303	681	24	4	1434	4	ST18	8	53071507	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	750401	53071507	93292515	53	54659										
CHD7	0	genome.wustl.edu	37	chr8	61693766	61693766	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atgacttccctggtggggtaGataaccaagaactaaatagg	11	7	0	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	61693766	61693766	G	C	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.1873	p.D625H	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	66	0	0	93	17	15.45	-	-	-	C	61693766	G	C	61693766	3	2	630	1	0	0	0	0	1	0	0	0	3359	942	33	2	1879	2	CHD7	8	61693766	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	8622259	61693766	84670256	54	54660										
TSTA3	0	genome.wustl.edu	37	chr8	144696346	144696346	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttacgcaccagcgagtatatGaactgcctccgcggattccc	9	14	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	8	144696346	144696346	G	A	SNP	TSTA3	ENST00000425753	human	ensembl	69_37n	-1	known	silent	c.651	p.F217	1.000	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522	72	0	0	24	8	25	-	-	-	A	144696346	G	A	144696346	2	1	630	1	0	0	0	0	0	0	0	1	16770	1281	45	2		2	TSTA3	8	144696346	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	83002580	144696346	1667676	55	54661										
OR13C2	0	genome.wustl.edu	37	chr9	107367609	107367609	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atggccaagccgaggaacatCtgcactgcacagccagaaag	11	12	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	9	107367609	107367609	C	G	SNP	OR13C2	ENST00000542196	human	ensembl	69_37n	-1	known	missense	c.300	p.Q100H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019	364	0	0	123	42	25.45	-	-	-	G	107367609	C	G	107367609	3	3	630	1	0	0	0	0	1	0	0	0	11007	912	32	2	659	2	OR13C2	9	107367609	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		107367609	33845822	56	54662										
AKNA	0	genome.wustl.edu	37	chr9	117099531	117099531	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ggctggtgggggagaggctgTgggcggccacttggcagctg	22	8	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	9	117099531	117099531	T	G	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.4123	p.T1375P	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	124	0	0	33	6	14.29	-	-	-	G	117099531	T	G	117099531	3	3	630	1	0	0	0	0	1	0	0	0	463	1696	59	5	200	5	AKNA	9	117099531	Missense_Mutation	SNP	T	TCGA-C8-A12T-01A-11D-A10Y-09	9731922	117099531	24113900	57	54663										
DBH	0	genome.wustl.edu	37	chr9	136516800	136516800	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atcttcgcctctcagctccaCacacacctgactgggagaaa	7	15	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	9	136516800	136516800	C	G	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	missense	c.1236	p.H412Q	1.000	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	106	0	0	34	4	10.53	-	-	-	G	136516800	C	G	136516800	3	3	630	1	0	0	0	0	1	0	0	0	4282	477	17	4	1262	4	DBH	9	136516800	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	19417269	136516800	4696631	58	54664										
CDC123	0	genome.wustl.edu	37	chr10	12291674	12291674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caaggactttgtagacctctCtactggggaggacgctcaca	11	11	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	12291674	12291674	C	T	SNP	CDC123	ENST00000281141	human	ensembl	69_37n	1	known	missense	c.941	p.S314F	1.000	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465	145	0	0	87	38	30.4	-	-	-	T	12291674	C	T	12291674	3	4	630	1	0	0	0	0	1	0	0	0	3084	913	32	2	987	2	CDC123	10	12291674	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		12291674	123243073	59	54665										
VIM	0	genome.wustl.edu	37	chr10	17278368	17278368	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gattaagacggttgaaactaGagatggacaggttggtatct	13	4	1	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	17278368	17278368	G	C	SNP	VIM	ENST00000224237	human	ensembl	69_37n	1	known	missense	c.1349	p.R450T	1.000	NULL	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025	129	0	0	73	28	27.45	-	-	-	C	17278368	G	C	17278368	3	2	630	1	0	0	0	0	1	0	0	0	17263	942	33	2	1379	2	VIM	10	17278368	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4986694	17278368	118256379	60	54666										
SEC24C	0	genome.wustl.edu	37	chr10	75525340	75525340	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tgctgtttttgcagctgtatCaatgatggtatgttcatgga	11	5	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	75525340	75525340	C	G	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	missense	c.1359	p.I453M	1.000	pfam_Znf_Sec23_Sec24,superfamily_Znf_Sec23_Sec24	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	437	0	0	397	83	17.29	-	-	-	G	75525340	C	G	75525340	3	3	630	1	0	0	0	0	1	0	0	0	14084	816	29	2	1389	2	SEC24C	10	75525340	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	58246972	75525340	60009407	61	54667										
DYDC1	0	genome.wustl.edu	37	chr10	82111696	82111696	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tctgctttgagcctctccatCatttcctgctccatcagagc	6	15	4	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	82111696	82111696	C	T	SNP	DYDC1	ENST00000421924	human	ensembl	69_37n	-1	known	missense	c.210	p.M70I	0.729	NULL	pfam_Dpy-30_motif	-	no_errors	DYDC1	HGNC	ENSG00000170788	264	0	0	195	67	25.48	-	-	-	T	82111696	C	T	82111696	3	4	630	1	0	0	0	0	1	0	0	0	4873	826	29	2	343	2	DYDC1	10	82111696	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	6586356	82111696	53423051	62	54668										
FAS	0	genome.wustl.edu	37	chr10	90773881	90773881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttttctatttttcagatgttGacttgagtaaatatatcacc	5	6	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	90773881	90773881	G	A	SNP	FAS	ENST00000355740	human	ensembl	69_37n	1	known	missense	c.682	p.D228N	0.950	superfamily_DEATH-like,smart_Death,prints_Fas_rcpt	pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_Fas_rcpt,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	FAS	HGNC	ENSG00000026103	59	0	0	39	36	48	-	-	-	A	90773881	G	A	90773881	3	1	630	1	0	0	0	0	1	0	0	0	5727	1290	45	2	716	2	FAS	10	90773881	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	8662185	90773881	44760866	63	54669										
LGI1	0	genome.wustl.edu	37	chr10	95518519	95518519	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttttttgttttctttcagatCctttgtgagatctggtttta	7	5	3	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	95518519	95518519	C	G	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.218	p.S73C	1.000	NULL	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	87	0	0	133	30	18.29	-	-	-	G	95518519	C	G	95518519	3	3	630	1	0	0	0	0	1	0	0	0	8806	855	30	2	224	2	LGI1	10	95518519	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	4744638	95518519	40016228	64	54670										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105377012	105377012	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctccactgtgacgcccttctCaaagccaatctcgtccttgc	6	17	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	105377012	105377012	C	G	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	missense	c.862	p.E288Q	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	447	0	0	243	41	14.44	-	-	-	G	105377012	C	G	105377012	3	3	630	1	0	0	0	0	1	0	0	0	14345	835	29	2	2559	2	SH3PXD2A	10	105377012	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	9858493	105377012	30157735	65	54671										
NSMCE4A	0	genome.wustl.edu	37	chr10	123720991	123720991	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cactgtacgggggaaagaatGaggatcaaccacaaagtcaa	11	8	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	123720991	123720991	G	T	SNP	NSMCE4A	ENST00000369023	human	ensembl	69_37n	-1	known	missense	c.886	p.H296N	1.000	pfam_Nse4	pfam_Nse4	-	no_errors	NSMCE4A	HGNC	ENSG00000107672	49	0	0	56	10	15.15	-	-	-	T	123720991	G	T	123720991	3	4	630	1	0	0	0	0	1	0	0	0	10750	1290	45	2	287	2	NSMCE4A	10	123720991	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	18343979	123720991	11813756	66	54672										
ACADSB	0	genome.wustl.edu	37	chr10	124802613	124802613	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atcgtgatactccgggccttCatatagggaaacctgaaaac	9	10	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	124802613	124802613	C	T	SNP	ACADSB	ENST00000358776	human	ensembl	69_37n	1	known	missense	c.733	p.H245Y	0.998	superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177	170	0	0	159	29	15.43	-	-	-	T	124802613	C	T	124802613	3	4	630	1	0	0	0	0	1	0	0	0	115	826	29	2	755	2	ACADSB	10	124802613	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	1081622	124802613	10732134	67	54673										
METTL10	0	genome.wustl.edu	37	chr10	126450881	126450881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcacttactaaaatgccaacGagggcctggcatggtataat	9	9	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	10	126450881	126450881	G	A	SNP	METTL10	ENST00000368836	human	ensembl	69_37n	-1	known	missense	c.863	p.S288L	0.000	NULL	pfam_Methyltransf_11,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_(Gua-N-7)_MeTrfase	-	no_errors	METTL10	HGNC	ENSG00000203791	32	0	0	37	20	35.09	-	-	-	A	126450881	G	A	126450881	3	1	630	1	0	0	0	0	1	0	0	0	9565	1059	37	1	20	1	METTL10	10	126450881	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	1648268	126450881	9083866	68	54674										
MUC5B	0	genome.wustl.edu	37	chr11	1269972	1269972	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atcaccacggccactacgatCacggccaccggctccaccac	7	20	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	1269972	1269972	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.11871	p.I3957	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	645	0	0	234	68	22.52	-	-	-	T	1269972	C	T	1269972	2	4	630	1	0	0	0	0	0	0	0	1	10051	816	29	2		2	MUC5B	11	1269972	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		1269972	133736544	69	54675										
MICAL2	0	genome.wustl.edu	37	chr11	12241781	12241781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cagagatgctgctgtgtgcgGagaacgtgaaccaagacaac	13	9	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	12241781	12241781	G	C	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	missense	c.982	p.E328Q	0.999	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	219	0	0	92	20	17.86	-	-	-	C	12241781	G	C	12241781	3	2	630	1	0	0	0	0	1	0	0	0	9641	1175	41	2	1008	2	MICAL2	11	12241781	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	10971809	12241781	122764735	70	54676										
ARHGAP1	0	genome.wustl.edu	37	chr11	46702881	46702881	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aggatgagcagagttttgatGaacatggttggatgcacgat	14	4	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	46702881	46702881	G	A	SNP	ARHGAP1	ENST00000528837	human	ensembl	69_37n	-1	novel	missense	c.358	p.H120Y	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP1	HGNC	ENSG00000175220	182	0	0	53	29	35.37	-	-	-	A	46702881	G	A	46702881	3	1	630	1	0	0	0	0	1	0	0	0	863	1281	45	2	853	2	ARHGAP1	11	46702881	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	34461100	46702881	88303635	71	54677										
DDI1	0	genome.wustl.edu	37	chr11	103908037	103908037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atctgtccctgctcaaggaaCgcaaccctcccttggcggaa	9	15	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	103908037	103908037	C	T	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	missense	c.487	p.R163C	1.000	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	39	0	0	9	9	50	-	-	-	T	103908037	C	T	103908037	3	4	630	1	0	0	0	0	1	0	0	0	4359	536	19	1	489	1	DDI1	11	103908037	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	57205156	103908037	31098479	72	54678										
ZBTB16	0	genome.wustl.edu	37	chr11	113934294	113934294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ggagtatgcatatacagccaCgctgcaagccaaggcggagg	14	10	0	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	113934294	113934294	C	T	SNP	ZBTB16	ENST00000335953	human	ensembl	69_37n	1	known	missense	c.272	p.T91M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	62	0	0	18	8	30.77	-	-	-	T	113934294	C	T	113934294	3	4	630	1	0	0	0	0	1	0	0	0	17622	536	19	1	274	1	ZBTB16	11	113934294	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	10026257	113934294	21072222	73	54679										
ROBO4	0	genome.wustl.edu	37	chr11	124761564	124761564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cccactgagcatgctcacagGagcgacgacagtctagtggg	13	12	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	124761564	124761564	G	A	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.1682	p.S561F	0.991	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	56	0	0	26	6	18.75	-	-	-	A	124761564	G	A	124761564	3	1	630	1	0	0	0	0	1	0	0	0	13602	1174	41	2	1373	2	ROBO4	11	124761564	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	10827270	124761564	10244952	74	54680										
FAM118B	0	genome.wustl.edu	37	chr11	126120562	126120562	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	actacaaattttgataatctCttggaactgtatgcagcaga	7	7	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	126120562	126120562	C	G	SNP	FAM118B	ENST00000533050	human	ensembl	69_37n	1	known	silent	c.501	p.L167	1.000	NULL	NULL	-	no_errors	FAM118B	HGNC	ENSG00000197798	153	0	0	141	30	17.54	-	-	-	G	126120562	C	G	126120562	2	3	630	1	0	0	0	0	0	0	0	1	5452	900	32	2		2	FAM118B	11	126120562	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	1358998	126120562	8885954	75	54681										
SRPR	0	genome.wustl.edu	37	chr11	126133864	126133864	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ggcattgaggctgcgtaggtCacagtaggtctggccggtgc	17	9	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	126133864	126133864	C	T	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.1864	p.D622N	1.000	pfam_Signal_recog_part_SRP54_GTPase,smart_Signal_recog_part_SRP54_GTPase	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	159	0	0	85	11	11.34	-	-	-	T	126133864	C	T	126133864	3	4	630	1	0	0	0	0	1	0	0	0	15253	826	29	2	56	2	SRPR	11	126133864	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	13302	126133864	8872652	76	54682										
PRDM10	0	genome.wustl.edu	37	chr11	129775573	129775573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ggccagtagtaactggagttGccacaccactgtctgtaatc	10	11	1	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	11	129775573	129775573	G	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.3239	p.A1080V	0.992	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	169	0	0	102	19	15.7	-	-	-	A	129775573	G	A	129775573	3	1	630	1	0	0	0	0	1	0	0	0	12532	1319	46	4	251	4	PRDM10	11	129775573	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	3641709	129775573	5230943	77	54683										
A2ML1	0	genome.wustl.edu	37	chr12	8995942	8995942	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gcaagccctgaccaagagatCagcttctcctactatgtgag	9	12	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	8995942	8995942	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	silent	c.1461	p.I487	0.040	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	73	0	0	48	14	22.58	-	-	-	T	8995942	C	T	8995942	2	4	630	1	0	0	0	0	0	0	0	1	5	816	29	2		2	A2ML1	12	8995942	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		8995942	124855953	78	54684										
OR8S1	0	genome.wustl.edu	37	chr12	48920158	48920158	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tctgcccacctcactgcagtGacactttactatggctcagg	8	14	3	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	48920158	48920158	G	A	SNP	OR8S1	ENST00000310194	human	ensembl	69_37n	1	known	silent	c.744	p.V248	0.937	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376	189	0	0	75	29	27.62	-	-	-	A	48920158	G	A	48920158	2	1	630	1	0	0	0	0	0	0	0	1	11319	1277	45	2		2	OR8S1	12	48920158	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	39924216	48920158	84931737	79	54685										
KRT1	0	genome.wustl.edu	37	chr12	53071193	53071193	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gcaatgatgctgtccaggtcGagactgcggttgttgtccat	13	9	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	53071193	53071193	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	silent	c.1035	p.L345	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	234	0	0	98	48	32.88	-	-	-	A	53071193	G	A	53071193	2	1	630	1	0	0	0	0	0	0	0	1	8500	1045	37	1		1	KRT1	12	53071193	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4151035	53071193	80780702	80	54686										
ERBB3	0	genome.wustl.edu	37	chr12	56478826	56478826	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctcgtggccatgaatgaattCtctactctaccattgcccaa	6	13	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	56478826	56478826	C	G	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.282	p.F94L	0.771	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	122	0	0	53	30	36.14	-	-	-	G	56478826	C	G	56478826	3	3	630	1	0	0	0	0	1	0	0	0	5245	912	32	2	292	2	ERBB3	12	56478826	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	3407633	56478826	77373069	81	54687										
GLT8D2	0	genome.wustl.edu	37	chr12	104388153	104388153	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tttctccaattgcttggtgaTgcgctggtgcttccattctg	10	10	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	104388153	104388153	T	A	SNP	GLT8D2	ENST00000360814	human	ensembl	69_37n	-1	known	missense	c.727	p.I243F	0.996	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D2	HGNC	ENSG00000120820	191	0	0	76	40	34.48	-	-	-	A	104388153	T	A	104388153	3	1	630	1	0	0	0	0	1	0	0	0	6522	1464	51	5	334	5	GLT8D2	12	104388153	Missense_Mutation	SNP	T	TCGA-C8-A12T-01A-11D-A10Y-09	47909327	104388153	29463742	82	54688										
RFX4	0	genome.wustl.edu	37	chr12	107083069	107083069	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctacacacccccacaggtttCtacctttattatgatgtaca	4	13	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	107083069	107083069	C	G	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.623	p.S208C	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	196	0	0	124	40	24.39	-	-	-	G	107083069	C	G	107083069	3	3	630	1	0	0	0	0	1	0	0	0	13348	913	32	2	795	2	RFX4	12	107083069	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2694916	107083069	26768826	83	54689										
BTBD11	0	genome.wustl.edu	37	chr12	108008853	108008853	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tataggttgtcagtactcctCataaatatccatccgtccac	5	12	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	108008853	108008853	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	69_37n	1	known	missense	c.1915	p.H639Y	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	290	0	0	147	50	25.38	-	-	-	T	108008853	C	T	108008853	3	4	630	1	0	0	0	0	1	0	0	0	1547	826	29	2	2046	2	BTBD11	12	108008853	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	925784	108008853	25843042	84	54690										
WSCD2	0	genome.wustl.edu	37	chr12	108620839	108620839	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccacccgattcccgctccatGacagagaggatgagcagctc	10	15	0	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	108620839	108620839	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.877	p.D293N	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	90	0	0	27	8	22.86	-	-	-	A	108620839	G	A	108620839	3	1	630	1	0	0	0	0	1	0	0	0	17504	1290	45	2	895	2	WSCD2	12	108620839	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	611986	108620839	25231056	85	54691										
GCN1L1	0	genome.wustl.edu	37	chr12	120582590	120582590	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gtagccacgatttctggcatCaacttctccaacttctccac	5	15	4	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	120582590	120582590	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	silent	c.5205	p.L1735	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	216	0	0	94	18	15.93	-	-	-	T	120582590	C	T	120582590	2	4	630	1	0	0	0	0	0	0	0	1	6349	825	29	2		2	GCN1L1	12	120582590	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	11961751	120582590	13269305	86	54692										
B3GNT4	0	genome.wustl.edu	37	chr12	122691843	122691843	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atagggggctcctgctggttCaccgcctcagccccctcgag	12	16	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	12	122691843	122691843	C	T	SNP	B3GNT4	ENST00000324189	human	ensembl	69_37n	1	known	missense	c.1045	p.H349Y	1.000	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT4	HGNC	ENSG00000176383	100	0	0	35	12	25.53	-	-	-	T	122691843	C	T	122691843	3	4	630	1	0	0	0	0	1	0	0	0	1263	826	29	2	1051	2	B3GNT4	12	122691843	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2109253	122691843	11160052	87	54693										
POLR1D	0	genome.wustl.edu	37	chr13	28197278	28197278	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agctgttgagccatttcagaGaggcctgaatgagctcatga	12	8	2	5			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	13	28197278	28197278	G	C	SNP	POLR1D	ENST00000302979	human	ensembl	69_37n	1	known	missense	c.293	p.R98T	1.000	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	-	no_errors	POLR1D	HGNC	ENSG00000186184	96	0	0	47	12	20.34	-	-	-	C	28197278	G	C	28197278	3	2	630	1	0	0	0	0	1	0	0	0	12286	942	33	2	299	2	POLR1D	13	28197278	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		28197278	86972600	88	54694										
BRCA2	0	genome.wustl.edu	37	chr13	32971062	32971062	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acatactttgcaatgaagcaGaaaacaagcttatgcatata	6	7	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	13	32971062	32971062	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.9529	p.E3177Q	0.998	pfam_BRCA2_OB_3,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	119	0	0	45	21	31.82	-	-	-	C	32971062	G	C	32971062	3	2	630	1	0	0	0	0	1	0	0	0	1507	943	33	2	9627	2	BRCA2	13	32971062	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4773784	32971062	82198816	89	54695										
KL	0	genome.wustl.edu	37	chr13	33635518	33635518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctgagcccattttcggctctGgagattatccatgggtgatg	12	9	1	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	13	33635518	33635518	G	A	SNP	KL	ENST00000380099	human	ensembl	69_37n	1	known	missense	c.2302	p.G768R	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116	166	0	0	70	29	29	-	-	-	A	33635518	G	A	33635518	3	1	630	1	0	0	0	0	1	0	0	0	8384	1349	47	4	2316	4	KL	13	33635518	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	664456	33635518	81534360	90	54696										
TPP2	0	genome.wustl.edu	37	chr13	103287966	103287966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctaataacattgactacacaGttcattcagtcagaagagct	6	9	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	13	103287966	103287966	G	T	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.1423	p.V475F	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	179	0	0	108	26	19.4	-	-	-	T	103287966	G	T	103287966	3	4	630	1	0	0	0	0	1	0	0	0	16508	1029	36	4	1469	4	TPP2	13	103287966	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	69652448	103287966	11881912	91	54697										
TMCO3	0	genome.wustl.edu	37	chr13	114188508	114188508	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tggaaagcaaggggaacaaaGaaatcctgatcttgggaata	12	5	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	13	114188508	114188508	G	C	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	missense	c.1492	p.E498Q	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	129	0	0	128	45	25.86	-	-	-	C	114188508	G	C	114188508	3	2	630	1	0	0	0	0	1	0	0	0	16092	943	33	2	1522	2	TMCO3	13	114188508	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	10900542	114188508	981370	92	54698										
NDRG2	0	genome.wustl.edu	37	chr14	21486365	21486365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gacggcagcggcactcacctGagtcagctggggctgacctc	14	14	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	21486365	21486365	G	C	SNP	NDRG2	ENST00000298687	human	ensembl	69_37n	-1	known	missense	c.895	p.Q299E	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG2	HGNC	ENSG00000165795	80	0	0	41	18	30.51	-	-	-	C	21486365	G	C	21486365	3	2	630	1	0	0	0	0	1	0	0	0	10324	1299	45	2	232	2	NDRG2	14	21486365	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		21486365	85863175	93	54699										
MYH7	0	genome.wustl.edu	37	chr14	23884421	23884421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gttccatgttcttcttcatgCgctccaggtgggcgctggtg	13	11	3	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	23884421	23884421	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.5342	p.R1781H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	192	0	0	99	20	16.81	-	-	-	T	23884421	C	T	23884421	3	4	630	1	0	0	0	0	1	0	0	0	10111	768	27	1	481	1	MYH7	14	23884421	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2398056	23884421	83465119	94	54700										
SEC23A	0	genome.wustl.edu	37	chr14	39545233	39545233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	catctccaaccaccattccaGgcccctgagtagcaggacca	7	17	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	39545233	39545233	G	A	SNP	SEC23A	ENST00000307712	human	ensembl	69_37n	-1	known	missense	c.893	p.P298L	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934	169	0	0	95	28	22.76	-	-	-	A	39545233	G	A	39545233	3	1	630	1	0	0	0	0	1	0	0	0	14079	1000	35	4	1456	4	SEC23A	14	39545233	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	15660812	39545233	67804307	95	54701										
YLPM1	0	genome.wustl.edu	37	chr14	75265199	75265199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agatgatgggtagaagagaaGatagtcgagagaagatgaac	15	2	0	8			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	75265199	75265199	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.3199	p.D1067N	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	133	0	0	96	41	29.93	-	-	-	A	75265199	G	A	75265199	3	1	630	1	0	0	0	0	1	0	0	0	17583	942	33	2	3217	2	YLPM1	14	75265199	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	35719966	75265199	32084341	96	54702										
TMED10	0	genome.wustl.edu	37	chr14	75601659	75601659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccaggtagctagtccaatgaGacagaacattgaaaagatgc	10	8	0	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	75601659	75601659	G	C	SNP	TMED10	ENST00000303575	human	ensembl	69_37n	-1	known	missense	c.589	p.L197V	1.000	pfam_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348	119	0	0	53	7	11.67	-	-	-	C	75601659	G	C	75601659	3	2	630	1	0	0	0	0	1	0	0	0	16098	942	33	2	74	2	TMED10	14	75601659	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	336460	75601659	31747881	97	54703										
DYNC1H1	0	genome.wustl.edu	37	chr14	102496269	102496269	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gaccagcaggaggctgaaaaGaagaaggtatggtgtcaggg	17	5	1	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	102496269	102496269	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.9756	p.K3252N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	163	0	0	112	27	19.42	-	-	-	C	102496269	G	C	102496269	3	2	630	1	0	0	0	0	1	0	0	0	4876	933	33	2	9954	2	DYNC1H1	14	102496269	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	26894610	102496269	4853271	98	54704										
AHNAK2	0	genome.wustl.edu	37	chr14	105409722	105409722	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gcctggacctccaggtcagcGgaagggggctgaacgctgag	17	11	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	105409722	105409722	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.12066	p.S4022	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	174	0	0	46	42	47.73	-	-	-	A	105409722	G	A	105409722	2	1	630	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409722	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	2913453	105409722	1939818	99	54705										
AHNAK2	0	genome.wustl.edu	37	chr14	105420515	105420515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tgtctcctgtgcctgcccctCcagggtctttccatggagcc	10	16	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	14	105420515	105420515	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.1273	p.E425K	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	69	0	0	30	12	28.57	-	-	-	T	105420515	C	T	105420515	3	4	630	1	0	0	0	0	1	0	0	0	415	864	30	2	16118	2	AHNAK2	14	105420515	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	10793	105420515	1929025	100	54706										
RYR3	0	genome.wustl.edu	37	chr15	33988430	33988430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tccttccagcaacattgaagGaactcatctcacagacgatg	7	12	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	15	33988430	33988430	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.5872	p.E1958K	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	88	0	0	17	10	37.04	-	-	-	A	33988430	G	A	33988430	3	1	630	1	0	0	0	0	1	0	0	0	13856	1175	41	2	6026	2	RYR3	15	33988430	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		33988430	68542962	101	54707										
AP4E1	0	genome.wustl.edu	37	chr15	51291329	51291329	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cagaaagcaccaaaagctttCaatatagtgtgcagatagaa	8	7	1	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	15	51291329	51291329	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	nonsense	c.2965	p.Q989*	0.819	pfam_Coatomer_bsu_C,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	161	0	0	126	34	21.12	-	-	-	T	51291329	C	T	51291329	4	4	630	1	0	0	0	0	0	1	0	0	753	827	29	2	3039	2	AP4E1	15	51291329	Nonsense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	17302899	51291329	51240063	102	54708										
ZNF609	0	genome.wustl.edu	37	chr15	64966802	64966802	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccttctccttcaagcaaattCagcacaaaaggcctctgtaa	5	13	4	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	15	64966802	64966802	C	T	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	silent	c.1749	p.F583	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	64	0	0	38	16	29.09	-	-	-	T	64966802	C	T	64966802	2	4	630	1	0	0	0	0	0	0	0	1	18131	825	29	2		2	ZNF609	15	64966802	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	13675473	64966802	37564590	103	54709										
DET1	0	genome.wustl.edu	37	chr15	89056368	89056368	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aggcccgagtcccgggcataGaacctaaaaagaacaaggac	11	11	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	15	89056368	89056368	G	C	SNP	DET1	ENST00000444300	human	ensembl	69_37n	-1	known	missense	c.1500	p.F500L	1.000	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	45	0	0	23	10	30.3	-	-	-	C	89056368	G	C	89056368	3	2	630	1	0	0	0	0	1	0	0	0	4486	933	33	2	189	2	DET1	15	89056368	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	24089566	89056368	13475024	104	54710										
PIGQ	0	genome.wustl.edu	37	chr16	633504	633504	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caggcaccctctagctccctCagccgaacagcaccctgcat	7	19	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	633504	633504	C	G	SNP	PIGQ	ENST00000026218	human	ensembl	69_37n	1	known	nonsense	c.2153	p.S718*	0.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	26	0	0	13	4	23.53	-	-	-	G	633504	C	G	633504	4	3	630	1	0	0	0	0	0	1	0	0	11970	838	29	2	2253	2	PIGQ	16	633504	Nonsense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		633504	89721249	105	54711										
TBC1D24	0	genome.wustl.edu	37	chr16	2549400	2549400	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	catgagcctaccctcttgctCatcaagaccacgcagaagga	8	14	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	2549400	2549400	C	T	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	1	known	silent	c.1185	p.L395	1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	104	0	0	24	14	36.84	-	-	-	T	2549400	C	T	2549400	2	4	630	1	0	0	0	0	0	0	0	1	15706	813	29	2		2	TBC1D24	16	2549400	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	1915896	2549400	87805353	106	54712										
GLYR1	0	genome.wustl.edu	37	chr16	4861729	4861729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gtgggccagggtcagcccctCggcaatagtggccatgaagc	15	12	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	4861729	4861729	C	T	SNP	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	missense	c.1357	p.E453K	1.000	superfamily_6-PGluconate_DH_C-like	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	146	0	0	44	6	12	-	-	-	T	4861729	C	T	4861729	3	4	630	1	0	0	0	0	1	0	0	0	6535	893	31	1	316	1	GLYR1	16	4861729	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2312329	4861729	85493024	107	54713										
TEKT5	0	genome.wustl.edu	37	chr16	10783850	10783850	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	accaaatcaatcccaatcctCttctctcgatggtacagaca	4	14	3	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	10783850	10783850	C	T	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	silent	c.597	p.K199	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	199	0	0	75	30	28.57	-	-	-	T	10783850	C	T	10783850	2	4	630	1	0	0	0	0	0	0	0	1	15851	912	32	2		2	TEKT5	16	10783850	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	5922121	10783850	79570903	108	54714										
CTCF	0	genome.wustl.edu	37	chr16	67655431	67655431	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	acattttacagaagcacacaGaaaatgtggccaaatttcac	6	9	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	67655431	67655431	G	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	nonsense	c.1294	p.E432*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	203	0	0	104	47	31.13	-	-	-	T	67655431	G	T	67655431	4	4	630	1	0	0	0	0	0	1	0	0	4032	943	33	2	1312	2	CTCF	16	67655431	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	56871581	67655431	22699322	109	54715										
PLA2G15	0	genome.wustl.edu	37	chr16	68283257	68283257	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccgacagtggtgcactacctCtgctccaagaagaccgaaag	10	13	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	68283257	68283257	C	A	SNP	PLA2G15	ENST00000219345	human	ensembl	69_37n	1	known	silent	c.192	p.L64	0.970	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	185	0	0	71	20	21.98	-	-	-	A	68283257	C	A	68283257	2	1	630	1	0	0	0	0	0	0	0	1	12066	900	32	2		2	PLA2G15	16	68283257	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	627826	68283257	22071496	110	54716										
ZFHX3	0	genome.wustl.edu	37	chr16	72827828	72827828	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agcagggatctgcaaggcttGaggtttcactgtagtccact	12	9	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	72827828	72827828	G	C	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.8753	p.S2918*	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	87	0	0	38	19	33.33	-	-	-	C	72827828	G	C	72827828	4	2	630	1	0	0	0	0	0	1	0	0	17730	1294	45	2	2366	2	ZFHX3	16	72827828	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4544571	72827828	17526925	111	54717										
ZFHX3	0	genome.wustl.edu	37	chr16	72832052	72832052	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agtcttcttgtactgacccaGagtcactgcccgttgggctc	10	13	3	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	72832052	72832052	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.4529	p.S1510F	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	49	0	0	49	10	16.95	-	-	-	A	72832052	G	A	72832052	3	1	630	1	0	0	0	0	1	0	0	0	17730	942	33	2	6590	2	ZFHX3	16	72832052	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4224	72832052	17522701	112	54718										
CMIP	0	genome.wustl.edu	37	chr16	81739122	81739122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	agtttggagacgctggccttCggctcctgtcggaacacctc	12	13	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	16	81739122	81739122	C	T	SNP	CMIP	ENST00000537098	human	ensembl	69_37n	1	known	missense	c.2110	p.R704W	1.000	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815	158	0	0	57	18	24	-	-	-	T	81739122	C	T	81739122	3	4	630	1	0	0	0	0	1	0	0	0	3608	875	31	1	2206	1	CMIP	16	81739122	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	8907070	81739122	8615631	113	54719										
PRPF8	0	genome.wustl.edu	37	chr17	1578489	1578489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcttggctgtcatgtagtcgGctatgttgtggtccacgatg	13	8	2	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	1578489	1578489	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.3017	p.A1006V	1.000	pfam_RRM_spliceosomal_PrP8	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	243	0	0	37	46	54.76	-	-	-	A	1578489	G	A	1578489	3	1	630	1	0	0	0	0	1	0	0	0	12656	1203	42	4	4086	4	PRPF8	17	1578489	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		1578489	79616721	114	54720										
PLSCR3	0	genome.wustl.edu	37	chr17	7296197	7296197	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cgatcggcatcctggatggaGaacttggggaggaagggatg	18	6	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	7296197	7296197	G	C	SNP	PLSCR3	ENST00000324822	human	ensembl	69_37n	-1	known	missense	c.582	p.F194L	1.000	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR3	HGNC	ENSG00000187838	301	0	0	44	36	45	-	-	-	C	7296197	G	C	7296197	3	2	630	1	0	0	0	0	1	0	0	0	12185	933	33	2	317	2	PLSCR3	17	7296197	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	5717708	7296197	73899013	115	54721										
TP53	0	genome.wustl.edu	37	chr17	7579383	7579383	+	Frame_Shift_Del	DEL	T	T	-													0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	accgtagctgccctggtaggTtttctgggaagggacagaag							TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	7579383	7579383	T	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.304	p.T102fs	0.262	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	57	0	0	12	4	25	-	-	-	-	7579383	T	-	7579383	7	5	630	1	0	1	0	1	0	0	0	0	16477	1725	60	0	998	0	TP53	17	7579383	Frame_Shift_Del	DEL	T	TCGA-C8-A12T-01A-11D-A10Y-09	283186	7579383	73615827	116	54722										
ARHGEF15	0	genome.wustl.edu	37	chr17	8215677	8215677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tagtccagtgtcccggcgctCcgcctccccagaacctgctc	9	19	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	8215677	8215677	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	missense	c.320	p.S107F	0.262	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	91	0	0	51	13	20.31	-	-	-	T	8215677	C	T	8215677	3	4	630	1	0	0	0	0	1	0	0	0	900	855	30	2	322	2	ARHGEF15	17	8215677	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	636294	8215677	72979533	117	54723										
MYH3	0	genome.wustl.edu	37	chr17	10558307	10558307	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	aagggctggttctgagcctcGatcctctccttttctgactt	9	12	3	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	10558307	10558307	G	A	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.75	p.I25	0.995	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	220	0	0	95	27	22.13	-	-	-	A	10558307	G	A	10558307	2	1	630	1	0	0	0	0	0	0	0	1	10108	1048	37	1		1	MYH3	17	10558307	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	2342630	10558307	70636903	118	54724										
STAT5B	0	genome.wustl.edu	37	chr17	40376887	40376887	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gggcagcggtcatacgtgttCtgaaagaatccaacagcaga	12	9	2	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	40376887	40376887	C	T	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	splice_site	c.286-1	e3-1	1.000	-	-	-	no_errors	STAT5B	HGNC	ENSG00000173757	190	0	0	45	21	31.82	-	-	-	T	40376887	C	T	40376887	5	4	630	1	0	0	0	0	0	0	1	0	15360	927	32	2	2142	2	STAT5B	17	40376887	Splice_Site	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	29818580	40376887	40818323	119	54725										
BRCA1	0	genome.wustl.edu	37	chr17	41243518	41243518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gcccgttcctctttcttcatCatctgaaaccaattccttgt	4	14	5	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	17	41243518	41243518	C	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.4030	p.D1344H	0.918	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	238	0	0	94	39	29.32	-	-	-	G	41243518	C	G	41243518	3	3	630	1	0	0	0	0	1	0	0	0	1506	826	29	2	1687	2	BRCA1	17	41243518	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	866631	41243518	39951692	120	54726										
OR7G3	0	genome.wustl.edu	37	chr19	9237482	9237482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gaggtgggagtcagagttgaCggccaggatgatgagcaggt	19	5	1	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	9237482	9237482	C	T	SNP	OR7G3	ENST00000305444	human	ensembl	69_37n	-1	known	missense	c.145	p.V49I	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G3	HGNC	ENSG00000170920	137	0	0	53	23	30.26	-	-	-	T	9237482	C	T	9237482	3	4	630	1	0	0	0	0	1	0	0	0	11297	536	19	1	796	1	OR7G3	19	9237482	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		9237482	49891501	121	54727										
OR7E24	0	genome.wustl.edu	37	chr19	9362661	9362661	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tacagcctgaggaacaaggaCattcaaagtgccctgtgcag	11	10	1	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	9362661	9362661	C	T	SNP	OR7E24	ENST00000456448	human	ensembl	69_37n	1	known	silent	c.942	p.D314	0.890	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521	151	0	0	51	17	25	-	-	-	T	9362661	C	T	9362661	2	4	630	1	0	0	0	0	0	0	0	1	11294	477	17	4		4	OR7E24	19	9362661	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	125179	9362661	49766322	122	54728										
ZNF560	0	genome.wustl.edu	37	chr19	9584909	9584909	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttctcataattctccagcatCacatctctgtataagtttct	3	11	5	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	9584909	9584909	C	G	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	silent	c.123	p.V41	0.411	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	302	0	0	104	17	13.93	-	-	-	G	9584909	C	G	9584909	2	3	630	1	0	0	0	0	0	0	0	1	18087	813	29	2		2	ZNF560	19	9584909	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	222248	9584909	49544074	123	54729										
PDE4A	0	genome.wustl.edu	37	chr19	10568682	10568682	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ttacagcccatgtcccaaatCacagggttgaaaaagttgat	8	9	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	10568682	10568682	C	T	SNP	PDE4A	ENST00000352831	human	ensembl	69_37n	1	known	silent	c.1005	p.I335	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989	93	0	0	41	16	28.07	-	-	-	T	10568682	C	T	10568682	2	4	630	1	0	0	0	0	0	0	0	1	11712	816	29	2		2	PDE4A	19	10568682	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	983773	10568682	48560301	124	54730										
TNPO2	0	genome.wustl.edu	37	chr19	12830080	12830080	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gagcagagggcgtaccttctGacttgagtctggtcaggacg	15	9	3	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	12830080	12830080	G	C	SNP	TNPO2	ENST00000425528	human	ensembl	69_37n	-1	known	nonsense	c.170	p.S57*	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576	346	0	0	131	47	26.26	-	-	-	C	12830080	G	C	12830080	4	2	630	1	0	0	0	0	0	1	0	0	16431	1294	45	2	2611	2	TNPO2	19	12830080	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	2261398	12830080	46298903	125	54731										
UNC13A	0	genome.wustl.edu	37	chr19	17756583	17756583	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ctcttgaacctctgtttcacGcgggatttgatgtcgtcatc	9	11	4	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	17756583	17756583	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	silent	c.2520	p.R840	0.019	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	202	0	0	49	30	37.5	-	-	-	A	17756583	G	A	17756583	2	1	630	1	0	0	0	0	0	0	0	1	17081	1074	38	1		1	UNC13A	19	17756583	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	4926503	17756583	41372400	126	54732										
ELL	0	genome.wustl.edu	37	chr19	18561569	18561569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gctgacatcggccagggggtCgtgggccctcgggggctcca	18	13	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	18561569	18561569	C	A	SNP	ELL	ENST00000262809	human	ensembl	69_37n	-1	known	missense	c.1183	p.D395Y	0.998	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656	14	0	0	4	4	50	-	-	-	A	18561569	C	A	18561569	3	1	630	1	0	0	0	0	1	0	0	0	5099	884	31	3	702	3	ELL	19	18561569	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	804986	18561569	40567414	127	54733										
ZNF841	0	genome.wustl.edu	37	chr19	52580298	52580298	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	caggcatttccactcctcctGagagaattctacagccacat	6	14	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	52580298	52580298	G	A	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	nonsense	c.55	p.Q19*	0.961	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	233	0	0	326	41	11.14	-	-	-	A	52580298	G	A	52580298	4	1	630	1	0	0	0	0	0	1	0	0	18282	1299	45	2	2731	2	ZNF841	19	52580298	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	34018729	52580298	6548685	128	54734										
TSEN34	0	genome.wustl.edu	37	chr19	54695795	54695795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gaccagtgatggccaggcttCgggagagcaggaggaagctg	18	8	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	19	54695795	54695795	C	T	SNP	TSEN34	ENST00000429671	human	ensembl	69_37n	1	known	missense	c.467	p.S156L	0.002	pirsf_tRNA_splic_SEN34	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN34,tigrfam_tRNA_splic	-	no_errors	TSEN34	HGNC	ENSG00000170892	49	0	0	67	24	25.81	-	-	-	T	54695795	C	T	54695795	3	4	630	1	0	0	0	0	1	0	0	0	16709	893	31	1	473	1	TSEN34	19	54695795	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	2115497	54695795	4433188	129	54735										
CSTL1	0	genome.wustl.edu	37	chr20	23424675	23424675	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cccctgcaaagcaagaagctGagaaaggtgtgtagtggaag	14	7	0	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	20	23424675	23424675	G	A	SNP	CSTL1	ENST00000246020	human	ensembl	69_37n	1	known	silent	c.324	p.L108	0.101	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CSTL1	HGNC	ENSG00000125823	136	0	0	79	25	24.04	-	-	-	A	23424675	G	A	23424675	2	1	630	1	0	0	0	0	0	0	0	1	4019	1277	45	2		2	CSTL1	20	23424675	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		23424675	39600845	130	54736										
DNTTIP1	0	genome.wustl.edu	37	chr20	44429770	44429770	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccagattgacccatgagcttCcaggaataaaggtcagagtc	10	10	1	4			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	20	44429770	44429770	C	A	SNP	DNTTIP1	ENST00000372622	human	ensembl	69_37n	1	known	missense	c.430	p.P144T	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	138	0	0	158	23	12.71	-	-	-	A	44429770	C	A	44429770	3	1	630	1	0	0	0	0	1	0	0	0	4716	855	30	2	448	2	DNTTIP1	20	44429770	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	21005095	44429770	18595750	131	54737										
COL20A1	0	genome.wustl.edu	37	chr20	61936827	61936827	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cctaaggccacagtggggggCctgagcccctccaagggcta	14	14	0	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	20	61936827	61936827	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	silent	c.252	p.G84	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	78	0	0	24	49	65.33	-	-	-	T	61936827	C	T	61936827	2	4	630	1	0	0	0	0	0	0	0	1	3709	726	26	4		4	COL20A1	20	61936827	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09	17507057	61936827	1088693	132	54738										
TRPM2	0	genome.wustl.edu	37	chr21	45811190	45811190	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cccacgatgacagctgcactCatctccaacaagcctgagtt	7	15	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	21	45811190	45811190	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.1476	p.L492	1.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	65	0	0	21	5	19.23	-	-	-	T	45811190	C	T	45811190	2	4	630	1	0	0	0	0	0	0	0	1	16682	813	29	2		2	TRPM2	21	45811190	Silent	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		45811190	2318705	133	54739										
ASCC2	0	genome.wustl.edu	37	chr22	30189366	30189366	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cacctgcggctgatgagctcGtcatcagagtctgcatcatt	10	12	4	3			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	22	30189366	30189366	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.1902	p.D634	0.900	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	81	0	0	30	4	11.76	-	-	-	A	30189366	G	A	30189366	2	1	630	1	0	0	0	0	0	0	0	1	1036	1136	40	1		1	ASCC2	22	30189366	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09		30189366	21115200	134	54740										
DEPDC5	0	genome.wustl.edu	37	chr22	32272223	32272223	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tacggcttctatttctacaaGatagtaacggacaaagagcc	8	9	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	22	32272223	32272223	G	T	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.3711	p.K1237N	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	77	0	0	39	11	22	-	-	-	T	32272223	G	T	32272223	3	4	630	1	0	0	0	0	1	0	0	0	4478	933	33	2	3910	2	DEPDC5	22	32272223	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	2082857	32272223	19032343	135	54741										
SLC16A8	0	genome.wustl.edu	37	chr22	38474563	38474563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcctcagtgtcactggctccGccctcagtgcctgggcctga	11	16	3	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	22	38474563	38474563	G	A	SNP	SLC16A8	ENST00000320521	human	ensembl	69_37n	-1	known	silent	c.1347	p.G449	0.000	tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A8	HGNC	ENSG00000100156	71	0	0	12	14	53.85	-	-	-	A	38474563	G	A	38474563	2	1	630	1	0	0	0	0	0	0	0	1	14503	1074	38	1		1	SLC16A8	22	38474563	Silent	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	6202340	38474563	12830003	136	54742										
MXRA5	0	genome.wustl.edu	37	chrX	3239762	3239762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	atccttaatttcttttccatCtgatgtgggtttatatgtga	7	6	2	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	3239762	3239762	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.3964	p.D1322N	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	316	0	0	168	113	40.07	-	-	-	T	3239762	C	T	3239762	3	4	630	1	0	0	0	0	1	0	0	0	10075	913	32	2	4534	2	MXRA5	23	3239762	Missense_Mutation	SNP	C	TCGA-C8-A12T-01A-11D-A10Y-09		3239762	152030798	137	54743										
CASK	0	genome.wustl.edu	37	chrX	41646461	41646461	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	ccatgtaaagcattccatctGagctatatgtctccaataac	5	11	2	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	41646461	41646461	G	C	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	nonsense	c.248	p.S83*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	283	0	0	169	76	30.89	-	-	-	C	41646461	G	C	41646461	4	2	630	1	0	0	0	0	0	1	0	0	2690	1294	45	2	2632	2	CASK	23	41646461	Nonsense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	38406699	41646461	113624099	138	54744										
SSX3	0	genome.wustl.edu	37	chrX	48214153	48214153	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	tcttttcccactcttccttaGagaagtatttggcaatatca	5	10	3	1			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	48214153	48214153	G	C	SNP	SSX3	ENST00000298396	human	ensembl	69_37n	-1	known	missense	c.98	p.S33C	0.025	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX3	HGNC	ENSG00000165584	419	1	0.24	311	92	22.83	-	-	-	C	48214153	G	C	48214153	3	2	630	1	0	0	0	0	1	0	0	0	15296	942	33	2	539	2	SSX3	23	48214153	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	6567692	48214153	107056407	139	54745										
CACNA1F	0	genome.wustl.edu	37	chrX	49083480	49083480	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	catgtccagctcttcggcttGagtgatccagtccaggtagc	11	12	1	2			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	49083480	49083480	G	C	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.1228	p.Q410E	0.985	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	125	0	0	39	17	30.36	-	-	-	C	49083480	G	C	49083480	3	2	630	1	0	0	0	0	1	0	0	0	2568	1299	45	2	4865	2	CACNA1F	23	49083480	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	869327	49083480	106187080	140	54746										
FOXO4	0	genome.wustl.edu	37	chrX	70321046	70321046	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	cattccctgctatctcggagTggtctctctggcttctcttt	8	13	4	0			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	70321046	70321046	T	G	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	missense	c.966	p.S322R	0.402	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	42	0	0	12	7	36.84	-	-	-	G	70321046	T	G	70321046	3	3	630	1	0	0	0	0	1	0	0	0	6073	1693	59	5	972	5	FOXO4	23	70321046	Missense_Mutation	SNP	T	TCGA-C8-A12T-01A-11D-A10Y-09	21237566	70321046	84949514	141	54747										
HTATSF1	0	genome.wustl.edu	37	chrX	135593306	135593306	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.563380281690141	80	3.6459900121904e-31	3.99067599067599	4.98522727272727	3.29881422924901	0.879733523359876	1	60	gctgccctgaaaaagaatctGaagagggctgccccaaaaga	11	10	1	5			TCGA-C8-A12T-01A-11D-A10Y-09	TCGA-C8-A12T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	961fae8a-d944-4866-b198-ea6f1e59a979	7ccbb62c-9382-43ef-ba5f-3f81d0074e07	X	135593306	135593306	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1402	p.E468K	0.767	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	24	0	0	23	6	20.69	-	-	-	A	135593306	G	A	135593306	3	1	630	1	0	0	0	0	1	0	0	0	7487	1291	45	2	1436	2	HTATSF1	23	135593306	Missense_Mutation	SNP	G	TCGA-C8-A12T-01A-11D-A10Y-09	65272260	135593306	19677254	142	54748										
MORN1	0	genome.wustl.edu	37	chr1	2268205	2268205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ggtggtacccaggcgggggcGgccccaggaggacatctgtg	19	11	1	0			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	2268205	2268205	G	A	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	missense	c.1121	p.P374L	0.347	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	9	0	0	9	13	56.52	-	-	-	A	2268205	G	A	2268205	3	1	631	1	0	0	0	0	1	0	0	0	9780	1116	39	1	388	1	MORN1	1	2268205	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09		2268205	246982416	1	54749										
ZBTB40	0	genome.wustl.edu	37	chr1	22839582	22839582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	cctcatgaccttcacccaggCctccgccctggcctatcaca	6	20	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	22839582	22839582	C	T	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	missense	c.2627	p.A876V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	42	0	0	93	28	23.14	-	-	-	T	22839582	C	T	22839582	3	4	631	1	0	0	0	0	1	0	0	0	17638	739	26	4	2669	4	ZBTB40	1	22839582	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	20571377	22839582	226411039	2	54750										
PDE4B	0	genome.wustl.edu	37	chr1	66838015	66838015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ggttggtttcatcgactacaTtgtccatccattgtgggaga	11	8	1	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	66838015	66838015	T	C	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.1865	p.I622T	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	31	0	0	55	18	24.66	-	-	-	C	66838015	T	C	66838015	3	2	631	1	0	0	0	0	1	0	0	0	11713	1493	52	5	2285	5	PDE4B	1	66838015	Missense_Mutation	SNP	T	TCGA-C8-A12U-01A-11D-A10Y-09	43998433	66838015	182412606	3	54751										
MAGI3	0	genome.wustl.edu	37	chr1	114184725	114184725	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ccctgtcatcaatggacagtCattaaccaagggagagactt	9	10	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	114184725	114184725	C	G	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	nonsense	c.1553	p.S518*	0.963	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	165	0	0	165	52	23.96	-	-	-	G	114184725	C	G	114184725	4	3	631	1	0	0	0	0	0	1	0	0	9263	838	29	2	1591	2	MAGI3	1	114184725	Nonsense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	47346710	114184725	135065896	4	54752										
ASH1L	0	genome.wustl.edu	37	chr1	155348180	155348182	+	Frame_Shift_Del	DEL	TCT	TCT	-													0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gtttgacatcaacgtagacaTcttgaaaagaaagcaaagaa							TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	155348180	155348182	TCT	-	DEL	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	frame_shift_del	c.6239	p.N2080fs	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	131	0	0	176	29	14.15	-	-	-	-	155348182	TCT	-	155348180	7	5	631	1	0	1	0	1	0	0	0	0	1045	1449	50	0	2746	0	ASH1L	1	155348180	Frame_Shift_Del	DEL	TCT	TCGA-C8-A12U-01A-11D-A10Y-09	41163455	155348180	93902441	5	54753										
SCYL3	0	genome.wustl.edu	37	chr1	169823868	169823868	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	agctgctgggctcgcagtcaTcccaagatgactcttccaca	9	14	2	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	169823868	169823868	T	C	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	missense	c.1712	p.D571G	0.990	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	76	0	0	33	16	32	-	-	-	C	169823868	T	C	169823868	3	2	631	1	0	0	0	0	1	0	0	0	14037	1435	50	5	524	5	SCYL3	1	169823868	Missense_Mutation	SNP	T	TCGA-C8-A12U-01A-11D-A10Y-09	14475688	169823868	79426753	6	54754										
RYR2	0	genome.wustl.edu	37	chr1	237608817	237608817	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gtcttccttttcaatagattTataaggtactttttcttttg	5	6	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	237608817	237608817	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.1281	p.F427	0.994	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	409	0	0	219	95	29.78	-	-	-	C	237608817	T	C	237608817	2	2	631	1	0	0	0	0	0	0	0	1	13855	1751	61	5		5	RYR2	1	237608817	Silent	SNP	T	TCGA-C8-A12U-01A-11D-A10Y-09	67784949	237608817	11641804	7	54755										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	123	0	0	107	85	44.27	-	-	-	G	178952085	A	G	178952085	3	3	631	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A12U-01A-11D-A10Y-09		178952085	19070345	8	54756										
CDH12	0	genome.wustl.edu	37	chr5	21802509	21802509	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	actttgaaagtgtatgccttCtttgtttcaaaatctaaagg	7	6	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	5	21802509	21802509	C	G	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.1023	p.K341N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	110	0	0	57	26	31.33	-	-	-	G	21802509	C	G	21802509	3	3	631	1	0	0	0	0	1	0	0	0	3127	912	32	2	1385	2	CDH12	5	21802509	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		21802509	159112751	9	54757										
SMPD2	0	genome.wustl.edu	37	chr6	109763931	109763931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ctggtgatggaagaactcccGcctcaccaacctggttcccc	9	16	1	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	6	109763931	109763931	G	A	SNP	SMPD2	ENST00000458487	human	ensembl	69_37n	1	putative	missense	c.158	p.R53H	0.029	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMPD2	HGNC	ENSG00000135587	64	0	0	91	16	14.95	-	-	-	A	109763931	G	A	109763931	3	1	631	1	0	0	0	0	1	0	0	0	14894	1102	38	1		1	SMPD2	6	109763931	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09		109763931	61351136	10	54758										
AKR1B1	0	genome.wustl.edu	37	chr7	134136358	134136358	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	cttgctgacgatgaagagctCctcacgcttcaccacctgct	8	15	2	3			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	7	134136358	134136358	C	A	SNP	AKR1B1	ENST00000285930	human	ensembl	69_37n	-1	known	nonsense	c.214	p.E72*	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662	50	0	0	123	37	23.12	-	-	-	A	134136358	C	A	134136358	4	1	631	1	0	0	0	0	0	1	0	0	466	864	30	2	772	2	AKR1B1	7	134136358	Nonsense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		134136358	25002305	11	54759										
CSGALNACT1	0	genome.wustl.edu	37	chr8	19277864	19277864	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tccatacctggctgtgtattCagcctacacgtattgaggaa	9	10	1	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	19277864	19277864	C	T	SNP	CSGALNACT1	ENST00000311540	human	ensembl	69_37n	-1	known	silent	c.1119	p.L373	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408	94	0	0	70	25	26.32	-	-	-	T	19277864	C	T	19277864	2	4	631	1	0	0	0	0	0	0	0	1	3970	813	29	2		2	CSGALNACT1	8	19277864	Silent	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		19277864	127086158	12	54760										
EYA1	0	genome.wustl.edu	37	chr8	72234498	72234498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tgggctgaaactactgctccCaattgctggaaaacaaaaac	8	10	0	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	72234498	72234498	C	T	SNP	EYA1	ENST00000340726	human	ensembl	69_37n	-1	known	missense	c.208	p.G70R	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313	199	0	0	260	39	13	-	-	-	T	72234498	C	T	72234498	3	4	631	1	0	0	0	0	1	0	0	0	5365	594	21	4	1626	4	EYA1	8	72234498	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	52956634	72234498	74129524	13	54761										
CPSF1	0	genome.wustl.edu	37	chr8	145620395	145620395	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ctgggggtggatgtaccgctCatctgtggggaccaagggtg	18	8	2	0			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	145620395	145620395	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	missense	c.3190	p.E1064K	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	37	0	0	52	80	60.61	-	-	-	T	145620395	C	T	145620395	3	4	631	1	0	0	0	0	1	0	0	0	3854	835	29	2	1181	2	CPSF1	8	145620395	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	73385897	145620395	743627	14	54762										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	81	0	0	162	92	36.22	-	-	-	G	8111514	-	G	8111513	7	5	631	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-C8-A12U-01A-11D-A10Y-09		8111513	127423234	15	54763										
CCDC73	0	genome.wustl.edu	37	chr11	32636346	32636346	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gtaactgattttctgttgtcCgtaacattcgaggtttgtcc	9	8	1	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	32636346	32636346	C	T	SNP	CCDC73	ENST00000335185	human	ensembl	69_37n	-1	known	silent	c.1518	p.T506	0.004	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714	188	0	0	114	75	39.68	-	-	-	T	32636346	C	T	32636346	2	4	631	1	0	0	0	0	0	0	0	1	2873	639	23	1		1	CCDC73	11	32636346	Silent	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		32636346	102370170	16	54764										
YIF1A	0	genome.wustl.edu	37	chr11	66055109	66055109	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gcgttgaggtcttgccggggGggcagaggagcatcacgact	18	9	2	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	66055109	66055109	G	T	SNP	YIF1A	ENST00000376901	human	ensembl	69_37n	-1	known	silent	c.387	p.P129	0.696	pfam_Hrf1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851	42	0	0	42	9	17.65	-	-	-	T	66055109	G	T	66055109	2	4	631	1	0	0	0	0	0	0	0	1	17572	1219	43	4		4	YIF1A	11	66055109	Silent	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	33418763	66055109	68951407	17	54765										
CCDC82	0	genome.wustl.edu	37	chr11	96117839	96117839	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tcttttagttcgcctccaatCaactcgagatttctgctcag	6	12	4	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	96117839	96117839	C	A	SNP	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	missense	c.73	p.D25Y	1.000	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	256	0	0	125	58	31.69	-	-	-	A	96117839	C	A	96117839	3	1	631	1	0	0	0	0	1	0	0	0	2883	826	29	2	1589	2	CCDC82	11	96117839	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	30062730	96117839	38888677	18	54766										
NCAM1	0	genome.wustl.edu	37	chr11	113130919	113130919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tcccgtctggcagtgaccacGtcatgctgaagtccctggac	11	14	2	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	113130919	113130919	G	A	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.1975	p.V659I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	121	0	0	115	60	34.29	-	-	-	A	113130919	G	A	113130919	3	1	631	1	0	0	0	0	1	0	0	0	10274	1145	40	1	2185	1	NCAM1	11	113130919	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	17013080	113130919	21875597	19	54767										
CCNT1	0	genome.wustl.edu	37	chr12	49089558	49089558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ttaccctccaattccaaatgCgtttgagcctgttgggagtt	9	10	0	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	49089558	49089558	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.761	p.R254H	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	271	1	0.37	127	25	16.45	-	-	-	T	49089558	C	T	49089558	3	4	631	1	0	0	0	0	1	0	0	0	2963	768	27	1	1427	1	CCNT1	12	49089558	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		49089558	84762337	20	54768										
SCN8A	0	genome.wustl.edu	37	chr12	52082854	52082854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	aacattcagggttctccgagCtttgaaaactatctctgtaa	7	9	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	52082854	52082854	C	T	SNP	SCN8A	ENST00000550891	human	ensembl	69_37n	1	novel	missense	c.680	p.A227V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,prints_Na_channel_a8su	-	no_errors	SCN8A	HGNC	ENSG00000196876	53	0	0	50	18	26.47	-	-	-	T	52082854	C	T	52082854	3	4	631	1	0	0	0	0	1	0	0	0	14012	812	28	4		4	SCN8A	12	52082854	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	2993296	52082854	81769041	21	54769										
ALDH1L2	0	genome.wustl.edu	37	chr12	105443688	105443688	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	aataatatttgtgcttacctGaattttgtcgcaccagccag	7	9	0	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	105443688	105443688	G	A	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	nonsense	c.1684	p.Q562*	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	141	0	0	78	15	16.13	-	-	-	A	105443688	G	A	105443688	4	1	631	1	0	0	0	0	0	1	0	0	495	1299	45	2	1131	2	ALDH1L2	12	105443688	Nonsense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	53360834	105443688	28408207	22	54770										
RPS6KA5	0	genome.wustl.edu	37	chr14	91341643	91341643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tcttcatgatttccaccgcgCtggtacacgtcaaacttcgg	8	13	3	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	14	91341643	91341643	C	T	SNP	RPS6KA5	ENST00000261991	human	ensembl	69_37n	-1	known	missense	c.1898	p.S633N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784	126	0	0	57	22	27.85	-	-	-	T	91341643	C	T	91341643	3	4	631	1	0	0	0	0	1	0	0	0	13740	797	28	4	522	4	RPS6KA5	14	91341643	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		91341643	16007897	23	54771										
DNAH9	0	genome.wustl.edu	37	chr17	11572453	11572453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	cccagagctagttttctatcCgtctctggagtctggagtga	11	10	3	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	11572453	11572453	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.2804	p.P935L	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	154	0	0	90	34	27.42	-	-	-	T	11572453	C	T	11572453	3	4	631	1	0	0	0	0	1	0	0	0	4643	652	23	1	2866	1	DNAH9	17	11572453	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09		11572453	69622757	24	54772										
LLGL1	0	genome.wustl.edu	37	chr17	18145941	18145941	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	aagatgtgaaggatttcctgGggtgaggctggtgggcaggt	19	4	0	3			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	18145941	18145941	G	C	SNP	LLGL1	ENST00000316843	human	ensembl	69_37n	1	known	missense	c.3115	p.G1039R	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat	-	no_errors	LLGL1	HGNC	ENSG00000131899	10	0	0	22	19	46.34	-	-	-	C	18145941	G	C	18145941	3	2	631	1	0	0	0	0	1	0	0	0	8889	1246	43	4	3197	4	LLGL1	17	18145941	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	6573488	18145941	63049269	25	54773										
AKAP1	0	genome.wustl.edu	37	chr17	55183615	55183615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tgcaggaggaagagtatgtaGcagagaagttgccaagtagg	16	4	0	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	55183615	55183615	G	C	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	missense	c.790	p.A264P	0.001	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	129	0	0	358	103	22.34	-	-	-	C	55183615	G	C	55183615	3	2	631	1	0	0	0	0	1	0	0	0	445	971	34	4	792	4	AKAP1	17	55183615	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	37037674	55183615	26011595	26	54774										
TCF4	0	genome.wustl.edu	37	chr18	52896202	52896202	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ccgagctctttgaaagcctcGttgatgtcacggacccgcag	11	13	2	2			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	18	52896202	52896202	G	A	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	silent	c.2061	p.N687	0.998	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	56	0	0	197	38	16.17	-	-	-	A	52896202	G	A	52896202	2	1	631	1	0	0	0	0	0	0	0	1	15790	1136	40	1		1	TCF4	18	52896202	Silent	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09		52896202	25181046	27	54775										
RANBP3	0	genome.wustl.edu	37	chr19	5925701	5925701	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	gttggcgtgtctgcgctgggGtgtccagcattctccatgtc	14	11	2	0			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	5925701	5925701	G	C	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	missense	c.861	p.H287Q	0.988	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	39	0	0	99	28	22.05	-	-	-	C	5925701	G	C	5925701	3	2	631	1	0	0	0	0	1	0	0	0	13112	1252	44	4	874	4	RANBP3	19	5925701	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09		5925701	53203282	28	54776										
ANKRD27	0	genome.wustl.edu	37	chr19	33134217	33134217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	cttgcctccatggtccccacGtatttaaagatcaggttgta	8	11	1	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	33134217	33134217	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.681	p.Y227	0.594	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	174	0	0	122	33	21.29	-	-	-	A	33134217	G	A	33134217	2	1	631	1	0	0	0	0	0	0	0	1	655	1140	40	1		1	ANKRD27	19	33134217	Silent	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	27208516	33134217	25994766	29	54777										
EHD2	0	genome.wustl.edu	37	chr19	48239666	48239666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	ctacctgaagaaggagatgcCctctgtgtttgggaaggaga	14	7	1	4			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	48239666	48239666	C	T	SNP	EHD2	ENST00000263277	human	ensembl	69_37n	1	known	missense	c.956	p.P319L	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	85	0	0	130	39	22.94	-	-	-	T	48239666	C	T	48239666	3	4	631	1	0	0	0	0	1	0	0	0	5013	623	22	4	970	4	EHD2	19	48239666	Missense_Mutation	SNP	C	TCGA-C8-A12U-01A-11D-A10Y-09	15105449	48239666	10889317	30	54778										
OSBPL2	0	genome.wustl.edu	37	chr20	60859166	60859166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tgtggggcatagatcctgttTcgtatgaatccttcaagaag	11	7	1	3			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	20	60859166	60859166	T	G	SNP	OSBPL2	ENST00000313733	human	ensembl	69_37n	1	known	missense	c.937	p.S313A	0.013	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703	116	0	0	161	42	20.69	-	-	-	G	60859166	T	G	60859166	3	3	631	1	0	0	0	0	1	0	0	0	11351	1783	62	5	971	5	OSBPL2	20	60859166	Missense_Mutation	SNP	T	TCGA-C8-A12U-01A-11D-A10Y-09		60859166	2166354	31	54779										
SH3KBP1	0	genome.wustl.edu	37	chrX	19854375	19854375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	tcatcatcgtgctgggcctgGtagtcaaactccactatggc	10	12	3	0			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	19854375	19854375	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	silent	c.30	p.Y10	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	145	0	0	169	72	29.75	-	-	-	A	19854375	G	A	19854375	2	1	631	1	0	0	0	0	0	0	0	1	14344	1256	44	4		4	SH3KBP1	23	19854375	Silent	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09		19854375	135416185	32	54780										
MSN	0	genome.wustl.edu	37	chrX	64955188	64955188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.151515151515152	5	0.569727348185035	1.45153985507246	2.67083333333333	1.11284722222222	1	1	0	cggatcttggccttgtgcatGgggaaccatgaactatacat	11	9	1	1			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	64955188	64955188	G	A	SNP	MSN	ENST00000360270	human	ensembl	69_37n	1	known	missense	c.855	p.M285I	1.000	pirsf_ERM,pfam_FERM_PH-like_C,prints_Ez/rad/moesin,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	93	0	0	159	72	31.17	-	-	-	A	64955188	G	A	64955188	3	1	631	1	0	0	0	0	1	0	0	0	9957	1348	47	4	885	4	MSN	23	64955188	Missense_Mutation	SNP	G	TCGA-C8-A12U-01A-11D-A10Y-09	45100813	64955188	90315372	33	54781										
CAMTA1	0	genome.wustl.edu	37	chr1	7792621	7792621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	gcggaggcggcagcagtggaGgcggcagcgggagcgggaat	23	8	0	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	7792621	7792621	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.3028	p.G1010S	0.998	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	98	0	0	94	17	15.32	-	-	-	A	7792621	G	A	7792621	3	1	632	1	0	0	0	0	1	0	0	0	2638	1000	35	4	3074	4	CAMTA1	1	7792621	Missense_Mutation	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		7792621	241458000	1	54782										
SYT6	0	genome.wustl.edu	37	chr1	114640409	114640409	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	tgtgcgatgggcttccggggGtatgccagcatctcgttcca	14	11	1	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	114640409	114640409	G	A	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	silent	c.1455	p.Y485	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	129	1	0.77	169	27	13.71	-	-	-	A	114640409	G	A	114640409	2	1	632	1	0	0	0	0	0	0	0	1	15570	1256	44	4		4	SYT6	1	114640409	Silent	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09	106847788	114640409	134610212	2	54783										
ILF2	0	genome.wustl.edu	37	chr1	153635526	153635526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	gggtcatgactgtgtgtactCtaaagttgccactctcacag	10	10	3	1			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	153635526	153635526	C	G	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	missense	c.890	p.R297T	1.000	pfam_DZF,smart_DZF	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	145	0	0	166	35	17.41	-	-	-	G	153635526	C	G	153635526	3	3	632	1	0	0	0	0	1	0	0	0	7765	913	32	2	294	2	ILF2	1	153635526	Missense_Mutation	SNP	C	TCGA-C8-A12V-01A-11D-A10Y-09	38995117	153635526	95615095	3	54784										
MFN1	0	genome.wustl.edu	37	chr3	179107927	179107927	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	aacaattcaaagctcttaagGtatttaaacctttcttctca	3	9	4	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	3	179107927	179107927	G	T	SNP	MFN1	ENST00000263969	human	ensembl	69_37n	1	known	splice_site	c.2147+1	e16+1	1.000	-	-	-	no_errors	MFN1	HGNC	ENSG00000171109	127	0	0	54	15	21.74	-	-	-	T	179107927	G	T	179107927	5	4	632	1	0	0	0	0	0	0	1	0	9594	1275	44	4	2210	4	MFN1	3	179107927	Splice_Site	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		179107927	18914503	4	54785										
NPR3	0	genome.wustl.edu	37	chr5	32786414	32786414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	tggaaaacatcgggaattacGggaagattccatcagatccc	10	9	1	2			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	5	32786414	32786414	G	C	SNP	NPR3	ENST00000265074	human	ensembl	69_37n	1	known	missense	c.1589	p.R530P	1.000	NULL	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389	206	0	0	108	31	22.14	-	-	-	C	32786414	G	C	32786414	3	2	632	1	0	0	0	0	1	0	0	0	10669	1116	39	3	1616	3	NPR3	5	32786414	Missense_Mutation	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		32786414	148128846	5	54786										
NUDT1	0	genome.wustl.edu	37	chr7	2290629	2290629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	cacactccgcgaggtggacaCggtctagcgggagcccaggg	16	13	1	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	7	2290629	2290629	C	T	SNP	NUDT1	ENST00000343985	human	ensembl	69_37n	1	known	missense	c.533	p.T178M	0.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase,prints_Nudix_hydrolase	-	no_errors	NUDT1	HGNC	ENSG00000106268	44	0	0	41	6	12.77	-	-	-	T	2290629	C	T	2290629	3	4	632	1	0	0	0	0	1	0	0	0	10798	536	19	1	547	1	NUDT1	7	2290629	Missense_Mutation	SNP	C	TCGA-C8-A12V-01A-11D-A10Y-09		2290629	156848034	6	54787										
ZFHX4	0	genome.wustl.edu	37	chr8	77618671	77618671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	caatgtcgccaggaacctccGaattcatatgaccagcgaaa	8	12	1	1			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	77618671	77618671	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.2348	p.R783Q	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	40	0	0	58	7	10.77	-	-	-	A	77618671	G	A	77618671	3	1	632	1	0	0	0	0	1	0	0	0	17731	1058	37	1	2350	1	ZFHX4	8	77618671	Missense_Mutation	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		77618671	68745351	7	54788										
EXT1	0	genome.wustl.edu	37	chr8	118849379	118849379	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	caggaatctgaaggacccaaGcctgcgaccacgaggaacca	11	13	1	1			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	118849379	118849379	G	T	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	missense	c.1024	p.L342I	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	69	0	0	77	13	14.44	-	-	-	T	118849379	G	T	118849379	3	4	632	1	0	0	0	0	1	0	0	0	5360	971	34	4	1256	4	EXT1	8	118849379	Missense_Mutation	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09	41230708	118849379	27514643	8	54789										
OPN4	0	genome.wustl.edu	37	chr10	88416983	88416983	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	gtggagtcactgtgatgatgCagtaagttcacggatgtgcg	15	6	2	2			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	10	88416983	88416983	C	T	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	1	known	nonsense	c.322	p.Q108*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	163	0	0	223	25	10.08	-	-	-	T	88416983	C	T	88416983	4	4	632	1	0	0	0	0	0	1	0	0	10955	724	25	4	332	4	OPN4	10	88416983	Nonsense_Mutation	SNP	C	TCGA-C8-A12V-01A-11D-A10Y-09		88416983	47117764	9	54790										
LOXL1	0	genome.wustl.edu	37	chr15	74239446	74239446	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	cgagttcagccactacgaccTactggatgcagccacaggca	10	14	1	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	15	74239446	74239446	T	C	SNP	LOXL1	ENST00000261921	human	ensembl	69_37n	1	known	missense	c.1388	p.L463P	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038	98	0	0	102	13	11.21	-	-	-	C	74239446	T	C	74239446	3	2	632	1	0	0	0	0	1	0	0	0	8965	1522	53	5	1402	5	LOXL1	15	74239446	Missense_Mutation	SNP	T	TCGA-C8-A12V-01A-11D-A10Y-09		74239446	28291946	10	54791										
RPL3L	0	genome.wustl.edu	37	chr16	2002953	2002953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	tgaagctccggagacctcgaGgggtggccacgtagcccacc	14	14	0	2			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	2002953	2002953	G	A	SNP	RPL3L	ENST00000268661	human	ensembl	69_37n	-1	known	missense	c.287	p.P96L	0.530	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	49	0	0	40	9	18.37	-	-	-	A	2002953	G	A	2002953	3	1	632	1	0	0	0	0	1	0	0	0	13680	1000	35	4	968	4	RPL3L	16	2002953	Missense_Mutation	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		2002953	88351800	11	54792										
CNTNAP4	0	genome.wustl.edu	37	chr16	76572213	76572213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	gctccttttacaaagaatacCtttctgtgatcattgccaaa	5	10	2	2			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	76572213	76572213	C	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	1	known	missense	c.3193	p.L1065I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	182	0	0	97	17	14.91	-	-	-	A	76572213	C	A	76572213	3	1	632	1	0	0	0	0	1	0	0	0	3679	681	24	4	3283	4	CNTNAP4	16	76572213	Missense_Mutation	SNP	C	TCGA-C8-A12V-01A-11D-A10Y-09	74569260	76572213	13782540	12	54793										
CRX	0	genome.wustl.edu	37	chr19	48342988	48342988	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	tcagcggcctagacccctacCtttctcccatggtgccccag	8	18	2	1			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	19	48342988	48342988	C	A	SNP	CRX	ENST00000221996	human	ensembl	69_37n	1	known	missense	c.664	p.L222I	1.000	pfam_Otx_TF_C	pfam_Homeodomain,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	CRX	HGNC	ENSG00000105392	83	0	0	74	11	12.94	-	-	-	A	48342988	C	A	48342988	3	1	632	1	0	0	0	0	1	0	0	0	3932	681	24	4	674	4	CRX	19	48342988	Missense_Mutation	SNP	C	TCGA-C8-A12V-01A-11D-A10Y-09		48342988	10785995	13	54794										
SSTR4	0	genome.wustl.edu	37	chr20	23017092	23017092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	ttccgccgattcttccagcgGgttctctgcctgcgctgctg	11	15	2	0			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	20	23017092	23017092	G	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.972	p.R324	0.981	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Somatstn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	100	0	0	116	14	10.77	-	-	-	T	23017092	G	T	23017092	2	4	632	1	0	0	0	0	0	0	0	1	15291	1219	43	4		4	SSTR4	20	23017092	Silent	SNP	G	TCGA-C8-A12V-01A-11D-A10Y-09		23017092	40008428	14	54795										
NOL12	0	genome.wustl.edu	37	chr22	38082463	38082463	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.88557499345737	1.20138888888889	4.80555555555556	0	1	1	0	ggccgaggctcgttcttagcTtcgacgaggagaagaggcgg	17	9	1	2			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	22	38082463	38082463	T	G	SNP	NOL12	ENST00000359114	human	ensembl	69_37n	1	known	missense	c.64	p.F22V	1.000	pfam_Nucleolar_protein_12	pfam_Nucleolar_protein_12	-	no_errors	NOL12	HGNC	ENSG00000256872	35	0	0	46	6	11.54	-	-	-	G	38082463	T	G	38082463	3	3	632	1	0	0	0	0	1	0	0	0	10594	1609	56	5	66	5	NOL12	22	38082463	Missense_Mutation	SNP	T	TCGA-C8-A12V-01A-11D-A10Y-09		38082463	13222103	15	54796										
UBR4	0	genome.wustl.edu	37	chr1	19481474	19481474	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gtcctgctgatggtggctgcGaatgatttgccttgacaata	12	8	0	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	19481474	19481474	G	A	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.6396	p.F2132	0.998	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	73	0	0	151	18	10.65	-	-	-	A	19481474	G	A	19481474	2	1	633	1	0	0	0	0	0	0	0	1	17001	1049	37	1		1	UBR4	1	19481474	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		19481474	229769147	1	54797										
PRPF38A	0	genome.wustl.edu	37	chr1	52871475	52871475	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tcaaattcaacccgagaaggAtatcattgtagagtttatca	7	7	4	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	52871475	52871475	A	G	SNP	PRPF38A	ENST00000257181	human	ensembl	69_37n	1	known	missense	c.254	p.D85G	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748	160	0	0	99	15	13.16	-	-	-	G	52871475	A	G	52871475	3	3	633	1	0	0	0	0	1	0	0	0	12648	333	12	5	260	5	PRPF38A	1	52871475	Missense_Mutation	SNP	A	TCGA-C8-A12W-01A-11D-A10Y-09	33390001	52871475	196379146	2	54798										
WDR78	0	genome.wustl.edu	37	chr1	67299695	67299695	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ataacagtctagtccttttcGtataacccatttggagattc	6	9	1	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	67299695	67299695	G	A	SNP	WDR78	ENST00000371026	human	ensembl	69_37n	-1	known	nonsense	c.1870	p.R624*	0.719	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	228	0	0	115	67	36.61	-	-	-	A	67299695	G	A	67299695	4	1	633	1	0	0	0	0	0	1	0	0	17425	1153	40	1	700	1	WDR78	1	67299695	Nonsense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	14428220	67299695	181950926	3	54799										
LRRC7	0	genome.wustl.edu	37	chr1	70505050	70505050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ctgcccccaactgataggtaCggcagacccccatatagggg	11	14	0	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	70505050	70505050	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	silent	c.3429	p.Y1143	0.988	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	30	0	0	33	7	17.5	-	-	-	T	70505050	C	T	70505050	2	4	633	1	0	0	0	0	0	0	0	1	9086	547	19	1		1	LRRC7	1	70505050	Silent	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	3205355	70505050	178745571	4	54800										
GON4L	0	genome.wustl.edu	37	chr1	155823258	155823258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gaaaagactccaaggaaggtAgggtgattccctgagagatg	14	6	0	4			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	155823258	155823258	A	G	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.314	p.L105P	0.017	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	133	0	0	86	94	52.22	-	-	-	G	155823258	A	G	155823258	3	3	633	1	0	0	0	0	1	0	0	0	6621	420	15	5	6649	5	GON4L	1	155823258	Missense_Mutation	SNP	A	TCGA-C8-A12W-01A-11D-A10Y-09	85318208	155823258	93427363	5	54801										
CD84	0	genome.wustl.edu	37	chr1	160519760	160519760	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gttcactggctcttccttggAgggaagcacctgtaaaacac	10	11	2	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	160519760	160519760	A	T	SNP	CD84	ENST00000311224	human	ensembl	69_37n	-1	known	missense	c.919	p.S307T	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD84	HGNC	ENSG00000066294	77	0	0	76	21	21.65	-	-	-	T	160519760	A	T	160519760	3	4	633	1	0	0	0	0	1	0	0	0	3071	304	11	5	126	5	CD84	1	160519760	Missense_Mutation	SNP	A	TCGA-C8-A12W-01A-11D-A10Y-09	4696502	160519760	88730861	6	54802										
HIST3H3	0	genome.wustl.edu	37	chr1	228612911	228612911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tgccgggccggtagcggtgcGgcttcttcacgccgccagtg	16	14	2	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	228612911	228612911	G	A	SNP	HIST3H3	ENST00000366696	human	ensembl	69_37n	-1	known	missense	c.116	p.P39L	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST3H3	HGNC	ENSG00000168148	21	0	0	35	18	33.96	-	-	-	A	228612911	G	A	228612911	3	1	633	1	0	0	0	0	1	0	0	0	7235	1116	39	1	298	1	HIST3H3	1	228612911	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	68093151	228612911	20637710	7	54803										
RNF144A	0	genome.wustl.edu	37	chr2	7164587	7164587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gagcgagacgaaggctgcgcGcagatgatgtgcaagaactg	16	8	0	4			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	7164587	7164587	G	A	SNP	RNF144A	ENST00000432850	human	ensembl	69_37n	1	putative	missense	c.584	p.R195H	0.001	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF144A	HGNC	ENSG00000151692	21	0	0	27	18	39.13	-	-	-	A	7164587	G	A	7164587	3	1	633	1	0	0	0	0	1	0	0	0	13531	1074	38	1	615	1	RNF144A	2	7164587	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		7164587	236034786	8	54804										
TTN	0	genome.wustl.edu	37	chr2	179477701	179477701	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttcaatgacataagactcaaTctttgcacctccatcatgtt	4	11	4	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	179477701	179477701	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.42043	p.I14015V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	121	0	0	159	27	14.52	-	-	-	C	179477701	T	C	179477701	3	2	633	1	0	0	0	0	1	0	0	0	16832	1435	50	5	58338	5	TTN	2	179477701	Missense_Mutation	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	172313114	179477701	63721672	9	54805										
TTN	0	genome.wustl.edu	37	chr2	179611635	179611635	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttgggtgtaccaaatgaatcGgaacgccatatttcataagc	9	8	1	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	179611635	179611635	G	A	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	silent	c.15492	p.S5164	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	139	0	0	104	33	24.09	-	-	-	A	179611635	G	A	179611635	2	1	633	1	0	0	0	0	0	0	0	1	16832	1103	39	1		1	TTN	2	179611635	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	133934	179611635	63587738	10	54806										
KLHDC8B	0	genome.wustl.edu	37	chr3	49212375	49212375	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gcccacactttgtcaacactGtggagatgtttgacctggag	11	10	1	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	49212375	49212375	G	C	SNP	KLHDC8B	ENST00000332780	human	ensembl	69_37n	1	known	missense	c.742	p.V248L	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8B	HGNC	ENSG00000185909	42	0	0	113	20	15.04	-	-	-	C	49212375	G	C	49212375	3	2	633	1	0	0	0	0	1	0	0	0	8416	1377	48	4	752	4	KLHDC8B	3	49212375	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		49212375	148810055	11	54807										
ITIH3	0	genome.wustl.edu	37	chr3	52833413	52833413	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	caatggctacttcgtgcactTctttgcacctcaaggccttc	7	14	2	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	52833413	52833413	T	A	SNP	ITIH3	ENST00000449956	human	ensembl	69_37n	1	known	missense	c.815	p.F272Y	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267	55	0	0	144	30	17.24	-	-	-	A	52833413	T	A	52833413	3	1	633	1	0	0	0	0	1	0	0	0	7959	1783	62	5	845	5	ITIH3	3	52833413	Missense_Mutation	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	3621038	52833413	145189017	12	54808										
CACNA2D3	0	genome.wustl.edu	37	chr3	55107854	55107854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	aggcccagaagatcagaaggCgcccagaatcttgtcatggc	12	11	3	4			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	55107854	55107854	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.3151	p.R1051C	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	85	0	0	121	27	18.24	-	-	-	T	55107854	C	T	55107854	3	4	633	1	0	0	0	0	1	0	0	0	2575	768	27	1	3297	1	CACNA2D3	3	55107854	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	2274441	55107854	142914576	13	54809										
CNTN3	0	genome.wustl.edu	37	chr3	74418526	74418526	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	attaatctgaggtatgggacTaagaagaaaatcgtcaagtt	10	4	2	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	74418526	74418526	T	C	SNP	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	splice_site	c.762-2	e7-2	1.000	-	-	-	no_errors	CNTN3	HGNC	ENSG00000113805	33	0	0	29	5	14.71	-	-	-	C	74418526	T	C	74418526	5	2	633	1	0	0	0	0	0	0	1	0	3672	1536	53	5	2390	5	CNTN3	3	74418526	Splice_Site	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	19310672	74418526	123603904	14	54810										
ROBO1	0	genome.wustl.edu	37	chr3	78666899	78666899	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ggagccgtccgaagaactaaCactggagcgtccgctggaaa	13	11	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	78666899	78666899	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.4168	p.V1390L	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	45	0	0	80	16	16.67	-	-	-	G	78666899	C	G	78666899	3	3	633	1	0	0	0	0	1	0	0	0	13599	478	17	4	807	4	ROBO1	3	78666899	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	4248373	78666899	119355531	15	54811										
COL6A6	0	genome.wustl.edu	37	chr3	130313159	130313159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gagagggactcctggtgaccGtggagcaaagggcctgcgag	18	9	0	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	130313159	130313159	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.4505	p.R1502H	0.003	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	84	0	0	56	15	21.13	-	-	-	A	130313159	G	A	130313159	3	1	633	1	0	0	0	0	1	0	0	0	3733	1145	40	1	4571	1	COL6A6	3	130313159	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	51646260	130313159	67709271	16	54812										
SMC4	0	genome.wustl.edu	37	chr3	160146661	160146661	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	acaagacaaacttgataaaaTaaataagcaattagatgaat	5	4	0	4			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	160146661	160146661	T	G	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.2726	p.I909R	1.000	pfam_RecF/RecN/SMC,superfamily_Prefoldin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	171	0	0	105	22	17.32	-	-	-	G	160146661	T	G	160146661	3	3	633	1	0	0	0	0	1	0	0	0	14874	1406	49	5	2792	5	SMC4	3	160146661	Missense_Mutation	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	29833502	160146661	37875769	17	54813										
WDR49	0	genome.wustl.edu	37	chr3	167223187	167223187	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	attttatatctaaatttataTcttctgatggtctgacactg	5	6	4	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	167223187	167223187	T	C	SNP	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	missense	c.1736	p.D579G	0.282	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	220	0	0	39	13	25	-	-	-	C	167223187	T	C	167223187	3	2	633	1	0	0	0	0	1	0	0	0	17399	1435	50	5	369	5	WDR49	3	167223187	Missense_Mutation	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	7076526	167223187	30799243	18	54814										
SKIL	0	genome.wustl.edu	37	chr3	170078980	170078980	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tatgttcagcctgatgctccGtgtattcaatgtctggagtg	11	8	3	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	170078980	170078980	G	T	SNP	SKIL	ENST00000259119	human	ensembl	69_37n	1	known	silent	c.861	p.P287	0.002	pfam_c-SKI_SMAD4-bd_dom,superfamily_SAND_dom-like	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	124	0	0	164	36	18	-	-	-	T	170078980	G	T	170078980	2	4	633	1	0	0	0	0	0	0	0	1	14447	1132	40	3		3	SKIL	3	170078980	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	2855793	170078980	27943450	19	54815										
AP2M1	0	genome.wustl.edu	37	chr3	183900729	183900729	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tagagatcattccgataaacTgctgcaccttagaggtgagg	11	8	1	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	183900729	183900729	T	C	SNP	AP2M1	ENST00000442686	human	ensembl	69_37n	1	putative	missense	c.316	p.C106R	0.000	pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_start_codon	AP2M1	HGNC	ENSG00000161203	8	0	0	2	12	85.71	-	-	-	C	183900729	T	C	183900729	3	2	633	1	0	0	0	0	1	0	0	0	743	1595	55	5		5	AP2M1	3	183900729	Missense_Mutation	SNP	T	TCGA-C8-A12W-01A-11D-A10Y-09	13821749	183900729	14121701	20	54816										
CXCL6	0	genome.wustl.edu	37	chr4	74702958	74702958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gaagcaagtttgtctggaccCggaagccccttttctaaaga	10	10	2	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	4	74702958	74702958	C	T	SNP	CXCL6	ENST00000226317	human	ensembl	69_37n	1	known	missense	c.281	p.P94L	1.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	CXCL6	HGNC	ENSG00000124875	267	0	0	183	56	23.43	-	-	-	T	74702958	C	T	74702958	3	4	633	1	0	0	0	0	1	0	0	0	4119	652	23	1	291	1	CXCL6	4	74702958	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09		74702958	116451318	21	54817										
ATOH1	0	genome.wustl.edu	37	chr4	94751069	94751069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ggaggaaaacagcaaaacttCgcctcggtcccacagaagcg	11	12	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	4	94751069	94751069	C	T	SNP	ATOH1	ENST00000306011	human	ensembl	69_37n	1	known	missense	c.992	p.S331L	0.998	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH1	HGNC	ENSG00000172238	8	0	0	5	4	44.44	-	-	-	T	94751069	C	T	94751069	3	4	633	1	0	0	0	0	1	0	0	0	1116	893	31	1	994	1	ATOH1	4	94751069	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	20048111	94751069	96403207	22	54818										
F2RL1	0	genome.wustl.edu	37	chr5	76128711	76128711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gtggtgggtttgccaagtaaCggcatggccctgtgggtctt	16	8	1	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	5	76128711	76128711	C	T	SNP	F2RL1	ENST00000296677	human	ensembl	69_37n	1	known	silent	c.279	p.N93	0.952	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2RL1	HGNC	ENSG00000164251	123	0	0	146	32	17.98	-	-	-	T	76128711	C	T	76128711	2	4	633	1	0	0	0	0	0	0	0	1	5381	535	19	1		1	F2RL1	5	76128711	Silent	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09		76128711	104786549	23	54819										
PCDHB7	0	genome.wustl.edu	37	chr5	140553707	140553707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ccgacttggggacacccaggCtgaaaaccgagcacaacata	10	13	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	5	140553707	140553707	C	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1291	p.L431M	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	85	0	0	86	27	23.68	-	-	-	A	140553707	C	A	140553707	3	1	633	1	0	0	0	0	1	0	0	0	11620	796	28	4	1293	4	PCDHB7	5	140553707	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	64424996	140553707	40361553	24	54820										
KIAA1191	0	genome.wustl.edu	37	chr5	175782616	175782616	+	Frame_Shift_Del	DEL	C	C	-													0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	cgctctggaatcactggcttCcaagggacgctgcccatgtc							TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	5	175782616	175782616	C	-	DEL	KIAA1191	ENST00000298569	human	ensembl	69_37n	-1	known	frame_shift_del	c.165	p.W55fs	1.000	NULL	NULL	-	no_errors	KIAA1191	HGNC	ENSG00000122203	20	0	0	43	6	12	-	-	-	-	175782616	C	-	175782616	7	5	633	1	0	1	0	1	0	0	0	0	8264	856	30	0	776	0	KIAA1191	5	175782616	Frame_Shift_Del	DEL	C	TCGA-C8-A12W-01A-11D-A10Y-09	35228909	175782616	5132644	25	54821										
POR	0	genome.wustl.edu	37	chr7	75609818	75609819	+	Frame_Shift_Del	DEL	AG	AG	-													0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	aagttcgcggtgagtcacccAgagactgctatgggctcccg							TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	7	75609818	75609819	AG	-	DEL	POR	ENST00000447222	human	ensembl	69_37n	1	putative	frame_shift_del	c.445_446	p.D150fs	0.002:0.000	pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	POR	HGNC	ENSG00000127948	8	0	0	14	19	54.29	-	-	-	-	75609819	AG	-	75609818	7	5	633	1	0	1	0	1	0	0	0	0	12331	203	7	0		0	POR	7	75609818	Frame_Shift_Del	DEL	AG	TCGA-C8-A12W-01A-11D-A10Y-09		75609818	83528845	26	54822										
RNF133	0	genome.wustl.edu	37	chr7	122338886	122338889	+	Frame_Shift_Del	DEL	CTGA	CTGA	-													0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	acacttgctctgcaacagttCtgactaacaagccaaagaac							TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	CTGA	CTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	7	122338886	122338889	CTGA	-	DEL	RNF133	ENST00000340112	human	ensembl	69_37n	-1	known	frame_shift_del	c.87_84	p.S28fs	0.512:0.531:0.719:0.713	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF133	HGNC	ENSG00000188050	25	0	0	26	3	10.34	-	-	-	-	122338889	CTGA	-	122338886	7	5	633	1	0	1	0	1	0	0	0	0	13525	912	32	0	1047	0	RNF133	7	122338886	Frame_Shift_Del	DEL	CTGA	TCGA-C8-A12W-01A-11D-A10Y-09	46729068	122338886	36799777	27	54823										
CCDC136	0	genome.wustl.edu	37	chr7	128452972	128452972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	agcccatggccccccagaacGacaagaatgaggtaaccact	9	14	0	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	7	128452972	128452972	G	A	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.2752	p.D918N	0.719	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	28	0	0	54	11	16.92	-	-	-	A	128452972	G	A	128452972	3	1	633	1	0	0	0	0	1	0	0	0	2795	1058	37	1	2806	1	CCDC136	7	128452972	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	6114086	128452972	30685691	28	54824										
ZER1	0	genome.wustl.edu	37	chr9	131513756	131513756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	agagcccgaggaactgcagcGgcctcttcagagcccggaaa	13	13	2	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	9	131513756	131513756	G	A	SNP	ZER1	ENST00000291900	human	ensembl	69_37n	-1	known	missense	c.974	p.P325L	0.999	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ZER1	HGNC	ENSG00000160445	55	0	0	111	22	16.54	-	-	-	A	131513756	G	A	131513756	3	1	633	1	0	0	0	0	1	0	0	0	17721	1116	39	1	1370	1	ZER1	9	131513756	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		131513756	9699675	29	54825										
CD163L1	0	genome.wustl.edu	37	chr12	7521559	7521559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	attcagtgatttcagcgactGtcctgagagagagagagaga	13	6	2	5			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	7521559	7521559	G	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.4042	p.Q1348K	0.043	superfamily_Srcr_rcpt-rel	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	134	0	0	303	64	17.39	-	-	-	T	7521559	G	T	7521559	3	4	633	1	0	0	0	0	1	0	0	0	2997	1386	48	4	335	4	CD163L1	12	7521559	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		7521559	126330336	30	54826										
ITGA5	0	genome.wustl.edu	37	chr12	54799461	54799461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	cactcacccatccccattgaCgtctgtggcggccactgcat	8	17	2	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	54799461	54799461	C	T	SNP	ITGA5	ENST00000293379	human	ensembl	69_37n	-1	known	missense	c.1003	p.V335I	0.057	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638	52	0	0	87	19	17.92	-	-	-	T	54799461	C	T	54799461	3	4	633	1	0	0	0	0	1	0	0	0	7933	536	19	1	2226	1	ITGA5	12	54799461	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	47277902	54799461	79052434	31	54827										
PPM1H	0	genome.wustl.edu	37	chr12	63042362	63042362	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttagatatccgccatcctctGtccttcagcacaccccgggc	7	17	2	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	63042362	63042362	G	A	SNP	PPM1H	ENST00000228705	human	ensembl	69_37n	-1	known	silent	c.1452	p.D484	1.000	superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1H	HGNC	ENSG00000111110	73	0	0	137	27	16.46	-	-	-	A	63042362	G	A	63042362	2	1	633	1	0	0	0	0	0	0	0	1	12418	1368	48	4		4	PPM1H	12	63042362	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	8242901	63042362	70809533	32	54828										
IFT88	0	genome.wustl.edu	37	chr13	21165111	21165111	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttttctgtttactagtccaaGacatctctggcatcatcaat	5	10	4	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	13	21165111	21165111	G	T	SNP	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	missense	c.243	p.K81N	1.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	315	0	0	75	60	44.44	-	-	-	T	21165111	G	T	21165111	3	4	633	1	0	0	0	0	1	0	0	0	7620	933	33	2	261	2	IFT88	13	21165111	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		21165111	94004767	33	54829										
SMG1	0	genome.wustl.edu	37	chr16	18830918	18830918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	caggggccaatgcagggttgGcaccacctgcccacttgagt	13	13	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	18830918	18830918	G	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.9803	p.A3268D	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	69	0	0	141	29	17.06	-	-	-	T	18830918	G	T	18830918	3	4	633	1	0	0	0	0	1	0	0	0	14884	1203	42	4	1217	4	SMG1	16	18830918	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		18830918	71523835	34	54830										
CD19	0	genome.wustl.edu	37	chr16	28948420	28948420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ccgagcagcgacgtccaggcGgatggagccttggggtcccg	17	13	0	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	28948420	28948420	G	A	SNP	CD19	ENST00000538922	human	ensembl	69_37n	1	known	silent	c.1161	p.A387	0.217	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	9	0	0	24	17	41.46	-	-	-	A	28948420	G	A	28948420	2	1	633	1	0	0	0	0	0	0	0	1	3002	1103	39	1		1	CD19	16	28948420	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	10117502	28948420	61406333	35	54831										
CCDC135	0	genome.wustl.edu	37	chr16	57752290	57752290	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tgacctgggtgaccctgtgaGatgggagtacatgctcctgg	15	9	0	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	57752290	57752290	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1109	p.R370K	0.989	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	98	0	0	199	31	13.48	-	-	-	A	57752290	G	A	57752290	3	1	633	1	0	0	0	0	1	0	0	0	2794	942	33	2	1135	2	CCDC135	16	57752290	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	28803870	57752290	32602463	36	54832										
TP53	0	genome.wustl.edu	37	chr17	7578272	7578272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tccttccactcggataagatGctgaggaggggccagaccta	12	11	0	3			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	7578272	7578272	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.577	p.H193Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	110	0	0	69	123	64.06	-	-	-	A	7578272	G	A	7578272	3	1	633	1	0	0	0	0	1	0	0	0	16477	1319	46	4	717	4	TP53	17	7578272	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		7578272	73616938	37	54833										
NOS2	0	genome.wustl.edu	37	chr17	26087691	26087691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ccgttgctgccagaaactgcGgaagggcgcgatgcctgtgc	15	12	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	26087691	26087691	G	T	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.2968	p.R990S	1.000	pfam_OxRdtase_FAD/NAD-bd,pirsf_NOS_met,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	18	0	0	81	15	15.62	-	-	-	T	26087691	G	T	26087691	3	4	633	1	0	0	0	0	1	0	0	0	10615	1116	39	3	509	3	NOS2	17	26087691	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	18509419	26087691	55107519	38	54834										
CDK12	0	genome.wustl.edu	37	chr17	37682239	37682239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	tgcttaacatccactccaacCcagagatgcagcagcagctg	8	14	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	37682239	37682239	C	T	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.3430	p.P1144S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	27	0	0	131	17	11.49	-	-	-	T	37682239	C	T	37682239	3	4	633	1	0	0	0	0	1	0	0	0	3157	623	22	4	3480	4	CDK12	17	37682239	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	11594548	37682239	43512971	39	54835										
IRF3	0	genome.wustl.edu	37	chr19	50163080	50163080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ctaccaaggccctgaggcacGtgggcacaacctgcagggga	14	13	0	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	19	50163080	50163080	G	A	SNP	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	missense	c.1109	p.T370M	0.669	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	47	0	0	103	54	34.39	-	-	-	A	50163080	G	A	50163080	3	1	633	1	0	0	0	0	1	0	0	0	7885	1145	40	1	178	1	IRF3	19	50163080	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		50163080	8965903	40	54836										
BRWD1	0	genome.wustl.edu	37	chr21	40570878	40570878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttcagattcagagtcttctgAgtcactcagaatcttggttt	8	8	7	4			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	21	40570878	40570878	A	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5464	p.S1822A	0.999	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	143	0	0	126	20	13.7	-	-	-	C	40570878	A	C	40570878	3	2	633	1	0	0	0	0	1	0	0	0	1533	304	11	5	1749	5	BRWD1	21	40570878	Missense_Mutation	SNP	A	TCGA-C8-A12W-01A-11D-A10Y-09		40570878	7559017	41	54837										
NLGN3	0	genome.wustl.edu	37	chrX	70375070	70375070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ccttctccttgcagacatccGggacagtggtgctaaacccg	10	14	1	1			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	70375070	70375070	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.584	p.R195Q	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	48	0	0	60	18	23.08	-	-	-	A	70375070	G	A	70375070	3	1	633	1	0	0	0	0	1	0	0	0	10535	1116	39	1	598	1	NLGN3	23	70375070	Missense_Mutation	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09		70375070	84895490	42	54838										
KIAA1210	0	genome.wustl.edu	37	chrX	118223625	118223625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	acattggatagccctgactcCgagaagcatcagtgtttgga	11	9	1	2			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	118223625	118223625	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1568	p.R523Q	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	350	1	0.28	192	187	49.34	-	-	-	T	118223625	C	T	118223625	3	4	633	1	0	0	0	0	1	0	0	0	8266	652	23	1	3577	1	KIAA1210	23	118223625	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	47848555	118223625	37046935	43	54839										
ODZ1	0	genome.wustl.edu	37	chrX	123805670	123805670	+	Missense_Mutation	SNP	C	C	T													0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	gttgcaactgccaagtcaggCcgaacaaatgcactgctgca							TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	123805670	123805670	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.1031	p.G344D	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	108	0	0	68	61	47.29	-	-	-	T	123805670	C	T	123805670	3	4	633	1	0	0	0	0	1	0	0	0	10907	739	26	4	7275	4	ODZ1	23	123805670	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	5582045	123805670	31464890	44	54840	431	2								
ODZ1	0	genome.wustl.edu	37	chrX	123805671	123805671	+	Missense_Mutation	SNP	C	C	G													0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	ttgcaactgccaagtcaggcCgaacaaatgcactgctgcaa							TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	123805671	123805671	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.1030	p.G344R	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	109	0	0	69	61	46.92	-	-	-	G	123805671	C	G	123805671	3	3	633	1	0	0	0	0	1	0	0	0	10907	652	23	3	7276	3	ODZ1	23	123805671	Missense_Mutation	SNP	C	TCGA-C8-A12W-01A-11D-A10Y-09	1	123805671	31464889	45	54841	431	2								
GAB3	0	genome.wustl.edu	37	chrX	153924213	153924213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	1	1	0.264427480916031	0	0.287421174908729	1	1	0	atttcgatgtagctttcttcGtcttctctggaaacaggatt	8	8	3	0			TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	153924213	153924213	G	A	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	silent	c.1509	p.D503	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	202	0	0	114	21	15.56	-	-	-	A	153924213	G	A	153924213	2	1	633	1	0	0	0	0	0	0	0	1	6199	1136	40	1		1	GAB3	23	153924213	Silent	SNP	G	TCGA-C8-A12W-01A-11D-A10Y-09	30118542	153924213	1346347	46	54842										
FBXO6	0	genome.wustl.edu	37	chr1	11732060	11732060	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ctactagacacattccggccGgacatcgtggttaaggactg	11	11	0	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	11732060	11732060	G	A	SNP	FBXO6	ENST00000376753	human	ensembl	69_37n	1	known	silent	c.489	p.P163	0.001	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO6	HGNC	ENSG00000116663	94	0	0	98	19	16.1	-	-	-	A	11732060	G	A	11732060	2	1	634	1	0	0	0	0	0	0	0	1	5805	1103	39	1		1	FBXO6	1	11732060	Silent	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		11732060	237518561	1	54843										
HDAC1	0	genome.wustl.edu	37	chr1	32798618	32798618	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	agtctctgctctctccacagGgtcaaggaggaggtcaagtt	12	10	4	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	32798618	32798618	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	silent	c.1422	p.G474	1.000	NULL	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	122	0	0	92	62	40.26	-	-	-	A	32798618	G	A	32798618	2	1	634	1	0	0	0	0	0	0	0	1	7055	1246	43	4		4	HDAC1	1	32798618	Silent	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	21066558	32798618	216452003	2	54844										
CSMD2	0	genome.wustl.edu	37	chr1	34254255	34254255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	actgccatcagtctggaagaGgagccacatttgatgattgg	12	8	2	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	34254255	34254255	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.1609	p.L537F	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	69	0	0	69	18	20.69	-	-	-	A	34254255	G	A	34254255	3	1	634	1	0	0	0	0	1	0	0	0	3977	1000	35	4	9206	4	CSMD2	1	34254255	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	1455637	34254255	214996366	3	54845										
TMEM53	0	genome.wustl.edu	37	chr1	45120323	45120323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gctgacgtgtgcagatgacaCgaaatccacagaacgcgcca	11	12	0	4			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	45120323	45120323	C	T	SNP	TMEM53	ENST00000372237	human	ensembl	69_37n	-1	known	missense	c.742	p.V248M	0.002	pfam_DUF829_TMEM53	pfam_DUF829_TMEM53	-	no_errors	TMEM53	HGNC	ENSG00000126106	55	0	0	24	9	27.27	-	-	-	T	45120323	C	T	45120323	3	4	634	1	0	0	0	0	1	0	0	0	16274	536	19	1	95	1	TMEM53	1	45120323	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	10866068	45120323	204130298	4	54846										
CACHD1	0	genome.wustl.edu	37	chr1	65124496	65124496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gcagcaagctgctgtaccacCggctggatctccttggccag	12	14	1	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	65124496	65124496	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	1	known	missense	c.1891	p.R631W	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	94	0	0	60	33	35.48	-	-	-	T	65124496	C	T	65124496	3	4	634	1	0	0	0	0	1	0	0	0	2562	643	23	1	1788	1	CACHD1	1	65124496	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	20004173	65124496	184126125	5	54847										
ESRRG	0	genome.wustl.edu	37	chr1	216850754	216850754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gctgtccgtcagggaggctgGgctggaaggttccgtcttga	17	9	2	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	216850754	216850754	G	T	SNP	ESRRG	ENST00000408911	human	ensembl	69_37n	-1	known	missense	c.136	p.P46T	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	76	0	0	129	25	16.23	-	-	-	T	216850754	G	T	216850754	3	4	634	1	0	0	0	0	1	0	0	0	5299	1232	43	4	1264	4	ESRRG	1	216850754	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	151726258	216850754	32399867	6	54848										
MARK1	0	genome.wustl.edu	37	chr1	220835233	220835233	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gttctttgcggttcacatggAgtatgaagaccactagttca	10	8	3	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	220835233	220835233	A	G	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.2113	p.S705G	1.000	superfamily_Kinase-assoc_KA1	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	80	0	0	62	12	16	-	-	-	G	220835233	A	G	220835233	3	3	634	1	0	0	0	0	1	0	0	0	9383	304	11	5	2183	5	MARK1	1	220835233	Missense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09	3984479	220835233	28415388	7	54849										
DPYSL5	0	genome.wustl.edu	37	chr2	27154529	27154529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tggaagctgaagccactcatCgtgttatcaccattgcaaac	8	11	2	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	27154529	27154529	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	missense	c.691	p.R231C	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	131	0	0	236	88	27.16	-	-	-	T	27154529	C	T	27154529	3	4	634	1	0	0	0	0	1	0	0	0	4785	884	31	1	709	1	DPYSL5	2	27154529	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09		27154529	216044844	8	54850										
CLIP4	0	genome.wustl.edu	37	chr2	29386783	29386783	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	agtattttagctgttctccaAgatatggaatatttgctccc	7	8	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	29386783	29386783	A	T	SNP	CLIP4	ENST00000402240	human	ensembl	69_37n	1	known	nonsense	c.1627	p.R543*	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295	225	0	0	133	30	18.4	-	-	-	T	29386783	A	T	29386783	4	4	634	1	0	0	0	0	0	1	0	0	3565	64	3	5	1667	5	CLIP4	2	29386783	Nonsense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09	2232254	29386783	213812590	9	54851										
IKZF2	0	genome.wustl.edu	37	chr2	213872500	213872500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ttcctggggtcgactctttgGtctgatgagagagatggggc	16	7	2	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	213872500	213872500	G	T	SNP	IKZF2	ENST00000434687	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419	125	0	0	99	39	28.26	-	-	-	T	213872500	G	T	213872500	3	4	634	1	0	0	0	0	1	0	0	0	7669	1261	44	4	419	4	IKZF2	2	213872500	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	184485717	213872500	29326873	10	54852										
XRN1	0	genome.wustl.edu	37	chr3	142123820	142123820	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tagataaactctgtgtctctAtcataccagcacattaggca	6	10	3	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	3	142123820	142123820	A	T	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.1812	p.D604E	0.002	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	177	0	0	167	110	39.71	-	-	-	T	142123820	A	T	142123820	3	4	634	1	0	0	0	0	1	0	0	0	17556	446	16	5	3416	5	XRN1	3	142123820	Missense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09		142123820	55898610	11	54853										
MEPE	0	genome.wustl.edu	37	chr4	88766794	88766794	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	atatctcctttcagtggggaCggccaaccttttaaggacat	9	10	2	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	4	88766794	88766794	C	T	SNP	MEPE	ENST00000361056	human	ensembl	69_37n	1	known	silent	c.774	p.D258	0.985	NULL	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595	57	0	0	114	21	15.56	-	-	-	T	88766794	C	T	88766794	2	4	634	1	0	0	0	0	0	0	0	1	9549	535	19	1		1	MEPE	4	88766794	Silent	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09		88766794	102387482	12	54854										
ISL1	0	genome.wustl.edu	37	chr5	50687262	50687262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gagtgacatagatcagcctgCttttcagcaactggtaagtg	11	8	2	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	50687262	50687262	C	T	SNP	ISL1	ENST00000230658	human	ensembl	69_37n	1	known	missense	c.920	p.A307V	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC	ENSG00000016082	33	0	0	37	8	17.78	-	-	-	T	50687262	C	T	50687262	3	4	634	1	0	0	0	0	1	0	0	0	7910	797	28	4	938	4	ISL1	5	50687262	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09		50687262	130227998	13	54855										
IL6ST	0	genome.wustl.edu	37	chr5	55251984	55251984	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ttgtggcattaactgtgtaaTtttgtaaatgtgatttccat	8	4	0	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	55251984	55251984	T	C	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.1136	p.N379S	0.022	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	329	0	0	41	135	76.7	-	-	-	C	55251984	T	C	55251984	3	2	634	1	0	0	0	0	1	0	0	0	7757	1493	52	5	1652	5	IL6ST	5	55251984	Missense_Mutation	SNP	T	TCGA-C8-A12X-01A-11D-A10Y-09	4564722	55251984	125663276	14	54856										
ATP10B	0	genome.wustl.edu	37	chr5	160059168	160059168	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gaaggccacaggaggctgtgAgctttcacggtgccccatag	14	11	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	160059168	160059168	A	G	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1588	p.S530P	0.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	24	0	0	33	26	44.07	-	-	-	G	160059168	A	G	160059168	3	3	634	1	0	0	0	0	1	0	0	0	1121	304	11	5	2853	5	ATP10B	5	160059168	Missense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09	104807184	160059168	20856092	15	54857										
C5orf25	0	genome.wustl.edu	37	chr5	175717093	175717093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tagctccctctccccaacaaGcaataatagtaggagcagca	7	13	1	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	175717093	175717093	G	A	SNP	C5orf25	ENST00000443967	human	ensembl	69_37n	1	known	missense	c.509	p.S170N	0.986	NULL	NULL	-	no_errors	C5orf25	HGNC	ENSG00000170085	58	0	0	113	33	22.6	-	-	-	A	175717093	G	A	175717093	3	1	634	1	0	0	0	0	1	0	0	0	2309	986	34	4		4	C5orf25	5	175717093	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	15657925	175717093	5198167	16	54858										
CAP2	0	genome.wustl.edu	37	chr6	17421790	17421790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gcctgtgcttttctagaatgGccaacatgcagggactggtg	13	9	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	6	17421790	17421790	G	T	SNP	CAP2	ENST00000229922	human	ensembl	69_37n	1	known	missense	c.4	p.A2S	0.999	NULL	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186	64	0	0	125	18	12.59	-	-	-	T	17421790	G	T	17421790	3	4	634	1	0	0	0	0	1	0	0	0	2645	1203	42	4	6	4	CAP2	6	17421790	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		17421790	153693277	17	54859										
VPS41	0	genome.wustl.edu	37	chr7	38768370	38768370	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gtcagctacgagaatcttctTgcagccttcacgaagcagaa	9	11	4	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	38768370	38768370	T	C	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.2281	p.K761E	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	218	0	0	182	26	12.5	-	-	-	C	38768370	T	C	38768370	3	2	634	1	0	0	0	0	1	0	0	0	17307	1821	63	5	299	5	VPS41	7	38768370	Missense_Mutation	SNP	T	TCGA-C8-A12X-01A-11D-A10Y-09		38768370	120370293	18	54860										
HEPACAM2	0	genome.wustl.edu	37	chr7	92826860	92826860	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tggatataatcaaaaatagtGatattccagttatacttgct	6	5	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	92826860	92826860	G	C	SNP	HEPACAM2	ENST00000394468	human	ensembl	69_37n	-1	known	nonsense	c.1076	p.S359*	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	285	0	0	146	88	37.45	-	-	-	C	92826860	G	C	92826860	4	2	634	1	0	0	0	0	0	1	0	0	7104	1294	45	2	336	2	HEPACAM2	7	92826860	Nonsense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	54058490	92826860	66311803	19	54861										
ZNF786	0	genome.wustl.edu	37	chr7	148769113	148769113	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gcgcagcagacacagcttccGgcggaagctcttaccgcaca	11	15	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	148769113	148769113	G	T	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	silent	c.751	p.R251	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	34	0	0	12	8	40	-	-	-	T	148769113	G	T	148769113	2	4	634	1	0	0	0	0	0	0	0	1	18251	1115	39	3		3	ZNF786	7	148769113	Silent	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	55942253	148769113	10369550	20	54862										
PREX2	0	genome.wustl.edu	37	chr8	69031699	69031699	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ccttaagtgttcgcatatctCatgataaacaggacaagata	7	8	1	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	8	69031699	69031699	C	G	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.3454	p.H1152D	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	197	0	0	223	44	16.48	-	-	-	G	69031699	C	G	69031699	3	3	634	1	0	0	0	0	1	0	0	0	12558	826	29	2	3793	2	PREX2	8	69031699	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09		69031699	77332323	21	54863										
VLDLR	0	genome.wustl.edu	37	chr9	2643294	2643294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gtgccccgccaacctgtggcGcccatgagttccagtgcagc	12	16	0	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	9	2643294	2643294	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.583	p.A195T	0.019	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	23	0	0	6	14	66.67	-	-	-	A	2643294	G	A	2643294	3	1	634	1	0	0	0	0	1	0	0	0	17271	1087	38	1	601	1	VLDLR	9	2643294	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		2643294	138570137	22	54864										
MADD	0	genome.wustl.edu	37	chr11	47306022	47306022	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	agcagaagagcctggcccagAcagtgagaactctcaggaaa	12	10	1	4			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	47306022	47306022	A	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.2063	p.D688V	0.019	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	63	0	0	107	22	17.05	-	-	-	T	47306022	A	T	47306022	3	4	634	1	0	0	0	0	1	0	0	0	9219	275	10	5	2105	5	MADD	11	47306022	Missense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09		47306022	87700494	23	54865										
ZNF202	0	genome.wustl.edu	37	chr11	123596728	123596728	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ggaggtcttttctgagtgggTcctctgatgcctaattaagt	12	7	3	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	123596728	123596728	T	A	SNP	ZNF202	ENST00000336139	human	ensembl	69_37n	-1	known	missense	c.1924	p.T642S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261	137	0	0	196	39	16.53	-	-	-	A	123596728	T	A	123596728	3	1	634	1	0	0	0	0	1	0	0	0	17859	1667	58	5	26	5	ZNF202	11	123596728	Missense_Mutation	SNP	T	TCGA-C8-A12X-01A-11D-A10Y-09	76290706	123596728	11409788	24	54866										
ROBO4	0	genome.wustl.edu	37	chr11	124757090	124757090	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	cagcaggatggaggagggagCctgtggtgccaccggaggcc	19	10	0	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	124757090	124757090	C	G	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.2218	p.A740P	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	23	0	0	33	29	46.77	-	-	-	G	124757090	C	G	124757090	3	3	634	1	0	0	0	0	1	0	0	0	13602	739	26	4	821	4	ROBO4	11	124757090	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	1160362	124757090	10249426	25	54867										
APLP2	0	genome.wustl.edu	37	chr11	130007179	130007180	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	cggagttgtaccacccaatgINSaaaaaaggttggtttgtcca							TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	130007179	130007180	-	A	INS	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	frame_shift_ins	c.1866_1867	p.G624fs	1.000:1.000	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	227	0	0	264	148	35.92	-	-	-	A	130007180	-	A	130007179	7	5	634	1	0	1	1	0	0	0	0	0	781	1290	45	0	1920	0	APLP2	11	130007179	Frame_Shift_Ins	INS	-	TCGA-C8-A12X-01A-11D-A10Y-09	5250089	130007179	4999337	26	54868										
KRT81	0	genome.wustl.edu	37	chr12	52681497	52681497	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ctgatcaccgtggccttcatCtcctcacactgggggaagta	10	13	4	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	52681497	52681497	C	T	SNP	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	silent	c.909	p.E303	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	35	0	0	73	52	41.6	-	-	-	T	52681497	C	T	52681497	2	4	634	1	0	0	0	0	0	0	0	1	8548	912	32	2		2	KRT81	12	52681497	Silent	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09		52681497	81170398	27	54869										
RPH3A	0	genome.wustl.edu	37	chr12	113306329	113306329	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gaagaccaagccccagcagcCtgtcagtgagcctgctgccc	11	16	1	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	113306329	113306329	C	A	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.539	p.P180H	0.001	NULL	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	32	0	0	34	21	38.18	-	-	-	A	113306329	C	A	113306329	3	1	634	1	0	0	0	0	1	0	0	0	13637	681	24	4	561	4	RPH3A	12	113306329	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	60624832	113306329	20545566	28	54870										
OASL	0	genome.wustl.edu	37	chr12	121461839	121461839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tctccctgttgtcatagcaaCagtcctgtttcaggcactgg	9	12	3	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	121461839	121461839	C	T	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	missense	c.1001	p.C334Y	1.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	68	0	0	88	17	16.19	-	-	-	T	121461839	C	T	121461839	3	4	634	1	0	0	0	0	1	0	0	0	10875	478	17	4	551	4	OASL	12	121461839	Missense_Mutation	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	8155510	121461839	12390056	29	54871										
DNAH10	0	genome.wustl.edu	37	chr12	124349182	124349182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	atgtggatgctctatgggtgGaaaacatgaattctgtgatg	13	4	2	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	124349182	124349182	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.6595	p.E2199K	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	274	0	0	154	112	42.11	-	-	-	A	124349182	G	A	124349182	3	1	634	1	0	0	0	0	1	0	0	0	4634	1175	41	2	6749	2	DNAH10	12	124349182	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	2887343	124349182	9502713	30	54872										
PSMC6	0	genome.wustl.edu	37	chr14	53184856	53184856	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	ccagctggactgcaatttctTaaaggtaaagggaagattat	10	6	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	14	53184856	53184856	T	G	SNP	PSMC6	ENST00000445930	human	ensembl	69_37n	1	known	nonsense	c.629	p.L210*	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519	226	1	0.44	136	35	20.47	-	-	-	G	53184856	T	G	53184856	4	3	634	1	0	0	0	0	0	1	0	0	12771	1764	61	5	659	5	PSMC6	14	53184856	Nonsense_Mutation	SNP	T	TCGA-C8-A12X-01A-11D-A10Y-09		53184856	54164684	31	54873										
WDR72	0	genome.wustl.edu	37	chr15	53908085	53908085	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gctgcatttttttggagatcTtcattttcttctgcctttta	6	8	4	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	53908085	53908085	T	G	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.2318	p.K773T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	165	0	0	143	36	20.11	-	-	-	G	53908085	T	G	53908085	3	3	634	1	0	0	0	0	1	0	0	0	17419	1609	56	5	1014	5	WDR72	15	53908085	Missense_Mutation	SNP	T	TCGA-C8-A12X-01A-11D-A10Y-09		53908085	48623307	32	54874										
WDR72	0	genome.wustl.edu	37	chr15	54015098	54015098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gaccaaataggagttctttcGctgaaatctgaaaataatga	8	6	2	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	54015098	54015098	G	A	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.161	p.A54V	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	134	0	0	114	24	17.39	-	-	-	A	54015098	G	A	54015098	3	1	634	1	0	0	0	0	1	0	0	0	17419	1087	38	1	3219	1	WDR72	15	54015098	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	107013	54015098	48516294	33	54875										
TBC1D21	0	genome.wustl.edu	37	chr15	74177364	74177364	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	agtaccagcagggcttccatGagatgatgatgctcttccag	11	10	1	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	74177364	74177364	G	T	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	1	known	nonsense	c.499	p.E167*	0.988	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	74	0	0	30	11	26.83	-	-	-	T	74177364	G	T	74177364	4	4	634	1	0	0	0	0	0	1	0	0	15702	1291	45	2	521	2	TBC1D21	15	74177364	Nonsense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	20162266	74177364	28354028	34	54876										
GSPT1	0	genome.wustl.edu	37	chr16	11976892	11976892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	cttgtttggcatcatcacaaGctgctggcctttacaaatag	8	10	2	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	16	11976892	11976892	G	A	SNP	GSPT1	ENST00000434724	human	ensembl	69_37n	-1	known	missense	c.1408	p.L470F	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT1	HGNC	ENSG00000103342	217	0	0	204	43	17.41	-	-	-	A	11976892	G	A	11976892	3	1	634	1	0	0	0	0	1	0	0	0	6877	971	34	4	525	4	GSPT1	16	11976892	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		11976892	78377861	35	54877										
STH	0	genome.wustl.edu	37	chr17	44076959	44076959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	cccctttcagggccagaactGtccctcccaccctgcagctg	8	19	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	17	44076959	44076959	G	T	SNP	STH	ENST00000537309	human	ensembl	69_37n	1	known	missense	c.314	p.C105F	0.000	NULL	NULL	-	no_errors	STH	HGNC	ENSG00000256762	36	0	0	41	8	16.33	-	-	-	T	44076959	G	T	44076959	3	4	634	1	0	0	0	0	1	0	0	0	15372	1377	48	4	316	4	STH	17	44076959	Missense_Mutation	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		44076959	37118251	36	54878										
LPPR2	0	genome.wustl.edu	37	chr19	11474496	11474496	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	atggatagccccctcgaaaaGttaagtgtggcgcaggtaag	13	8	0	0			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	19	11474496	11474496	G	C	SNP	LPPR2	ENST00000251473	human	ensembl	69_37n	1	known	splice_site	c.947+1	e6+1	1.000	-	-	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	21	0	0	25	14	35.9	-	-	-	C	11474496	G	C	11474496	5	2	634	1	0	0	0	0	0	0	1	0	8991	1043	36	4	970	4	LPPR2	19	11474496	Splice_Site	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09		11474496	47654487	37	54879										
PRKCG	0	genome.wustl.edu	37	chr19	54403952	54403952	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	tgtaaggagaacgtcttcccCgggacgacaacccgcacctt	10	14	1	1			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	19	54403952	54403952	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	1	known	silent	c.1524	p.P508	0.650	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	55	0	0	73	42	36.52	-	-	-	T	54403952	C	T	54403952	2	4	634	1	0	0	0	0	0	0	0	1	12593	639	23	1		1	PRKCG	19	54403952	Silent	SNP	C	TCGA-C8-A12X-01A-11D-A10Y-09	42929456	54403952	4725031	38	54880										
USP25	0	genome.wustl.edu	37	chr21	17199314	17199314	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	agcacaacagaacaacagggAgccctatcttcagaactgcc	8	13	2	2			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	21	17199314	17199314	A	T	SNP	USP25	ENST00000453553	human	ensembl	69_37n	1	putative	missense	c.71	p.E24V	0.719	pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP25	HGNC	ENSG00000155313	91	0	0	90	19	17.43	-	-	-	T	17199314	A	T	17199314	3	4	634	1	0	0	0	0	1	0	0	0	17153	291	11	5	1539	5	USP25	21	17199314	Missense_Mutation	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09		17199314	30930581	39	54881										
MAGEB4	0	genome.wustl.edu	37	chrX	30260918	30260918	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	cgtgaagaggaaatctgggaAttcctgaatatgctggggat	14	5	1	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	30260918	30260918	A	G	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	silent	c.666	p.E222	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	93	0	0	188	36	16.07	-	-	-	G	30260918	A	G	30260918	2	3	634	1	0	0	0	0	0	0	0	1	9249	98	4	5		5	MAGEB4	23	30260918	Silent	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09		30260918	125009642	40	54882										
CCNB3	0	genome.wustl.edu	37	chrX	50090648	50090648	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	atccacaccaacatgaagacActgaccttgtcccgctacat	5	15	0	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	50090648	50090648	A	G	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	silent	c.3834	p.T1278	0.815	pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	87	0	0	47	25	34.72	-	-	-	G	50090648	A	G	50090648	2	3	634	1	0	0	0	0	0	0	0	1	2943	146	6	5		5	CCNB3	23	50090648	Silent	SNP	A	TCGA-C8-A12X-01A-11D-A10Y-09	19829730	50090648	105179912	41	54883										
CSTF2	0	genome.wustl.edu	37	chrX	100078982	100078982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	3	0.904872247913239	0.96889400921659	3.39112903225806	0.398956356736243	1	1	0	gtgatgagaattgtggatccGgaaattgccctggtgagtgc	15	6	0	3			TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	100078982	100078982	G	A	SNP	CSTF2	ENST00000415585	human	ensembl	69_37n	1	known	silent	c.552	p.P184	0.951	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811	260	0	0	259	63	19.57	-	-	-	A	100078982	G	A	100078982	2	1	634	1	0	0	0	0	0	0	0	1	4016	1103	39	1		1	CSTF2	23	100078982	Silent	SNP	G	TCGA-C8-A12X-01A-11D-A10Y-09	49988334	100078982	55191578	42	54884										
ZSWIM5	0	genome.wustl.edu	37	chr1	45501826	45501826	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cggcataccttgtcctgtgcGtagaggccttcaggcattaa	11	11	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	1	45501826	45501826	G	A	SNP	ZSWIM5	ENST00000359600	human	ensembl	69_37n	-1	known	silent	c.2040	p.Y680	0.309	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	122	0	0	95	56	36.84	-	-	-	A	45501826	G	A	45501826	2	1	635	1	0	0	0	0	0	0	0	1	18335	1140	40	1		1	ZSWIM5	1	45501826	Silent	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		45501826	203748795	1	54885										
CC2D1B	0	genome.wustl.edu	37	chr1	52820569	52820569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggatcaccctcttgaagcccCggtggtttcggttgatgttt	12	10	2	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	1	52820569	52820569	C	T	SNP	CC2D1B	ENST00000371586	human	ensembl	69_37n	-1	known	missense	c.2300	p.R767Q	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1B	HGNC	ENSG00000154222	463	0	0	316	159	33.47	-	-	-	T	52820569	C	T	52820569	3	4	635	1	0	0	0	0	1	0	0	0	2752	652	23	1	288	1	CC2D1B	1	52820569	Missense_Mutation	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09	7318743	52820569	196430052	2	54886										
C1orf194	0	genome.wustl.edu	37	chr1	109649198	109649198	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggatggactcctttttagggTtgatccagtgtctgatgtta	12	6	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	1	109649198	109649198	T	C	SNP	C1orf194	ENST00000369948	human	ensembl	69_37n	-1	known	missense	c.398	p.N133S	1.000	NULL	pfam_DUF3695	-	no_errors	C1orf194	HGNC	ENSG00000179902	342	0	0	248	123	32.71	-	-	-	C	109649198	T	C	109649198	3	2	635	1	0	0	0	0	1	0	0	0	2044	1725	60	5	119	5	C1orf194	1	109649198	Missense_Mutation	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09	56828629	109649198	139601423	3	54887										
CACNA1E	0	genome.wustl.edu	37	chr1	181702838	181702838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgagagcaccagcgtcaccGtcgccatccccgacgtggac	11	18	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	1	181702838	181702838	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.3214	p.V1072I	0.891	prints_VDCC_R_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	32	0	0	43	6	12.24	-	-	-	A	181702838	G	A	181702838	3	1	635	1	0	0	0	0	1	0	0	0	2567	1145	40	1	3296	1	CACNA1E	1	181702838	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09	72053640	181702838	67547783	4	54888										
SLC30A10	0	genome.wustl.edu	37	chr1	220089061	220089061	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggtgagttgcagagcaacagTaagtccttctgctccagggg	14	9	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	1	220089061	220089061	T	A	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.1188	p.L396F	0.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	132	0	0	158	107	40.38	-	-	-	A	220089061	T	A	220089061	3	1	635	1	0	0	0	0	1	0	0	0	14643	1635	57	5	273	5	SLC30A10	1	220089061	Missense_Mutation	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09	38386223	220089061	29161560	5	54889										
RAB3GAP1	0	genome.wustl.edu	37	chr2	135848702	135848702	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaggatgagttattagagggTaagttatttctatataataa	9	1	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	2	135848702	135848702	T	C	SNP	RAB3GAP1	ENST00000264158	human	ensembl	69_37n	1	known	splice_site	c.283+2	e4+2	1.000	-	-	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839	181	0	0	101	84	45.41	-	-	-	C	135848702	T	C	135848702	5	2	635	1	0	0	0	0	0	0	1	0	13018	1652	57	5	299	5	RAB3GAP1	2	135848702	Splice_Site	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09		135848702	107350671	6	54890										
MSL2	0	genome.wustl.edu	37	chr3	135870774	135870774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aagtgcaggactggtggacaTaaaaacattatggctaagag	12	5	0	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	3	135870774	135870774	T	C	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	missense	c.949	p.M317V	0.997	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	255	0	0	300	94	23.86	-	-	-	C	135870774	T	C	135870774	3	2	635	1	0	0	0	0	1	0	0	0	9950	1406	49	5	788	5	MSL2	3	135870774	Missense_Mutation	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09		135870774	62151656	7	54891										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	235	0	0	163	409	71.5	-	-	-	G	178952085	A	G	178952085	3	3	635	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A12Y-01A-11D-A12B-09	43081311	178952085	19070345	8	54892										
C6	0	genome.wustl.edu	37	chr5	41149444	41149444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caagaccccattctaactggCggccgtcttggcaggaacca	10	14	2	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	5	41149444	41149444	C	T	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.2522	p.R841H	0.177	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	293	0	0	241	95	28.19	-	-	-	T	41149444	C	T	41149444	3	4	635	1	0	0	0	0	1	0	0	0	2336	768	27	1	290	1	C6	5	41149444	Missense_Mutation	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09		41149444	139765816	9	54893										
CAST	0	genome.wustl.edu	37	chr5	96086348	96086348	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgtgtgtcggacctccatgTgtagtatacagtcagcaccc	10	12	1	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	5	96086348	96086348	T	A	SNP	CAST	ENST00000437034	human	ensembl	69_37n	1	novel	nonsense	c.492	p.C164*	1.000	pfam_Prot_inh_calpain	pfam_Prot_inh_calpain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CAST	HGNC	ENSG00000153113	191	0	0	104	62	37.35	-	-	-	A	96086348	T	A	96086348	4	1	635	1	0	0	0	0	0	1	0	0	2709	1696	59	5	1688	5	CAST	5	96086348	Nonsense_Mutation	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09	54936904	96086348	84828912	10	54894										
EDN1	0	genome.wustl.edu	37	chr6	12294560	12294560	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaagactgttccaagcttggGaaaaagtgtatttatcagca	9	6	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	6	12294560	12294560	G	T	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	1	known	silent	c.456	p.G152	0.008	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	467	0	0	305	141	31.61	-	-	-	T	12294560	G	T	12294560	2	4	635	1	0	0	0	0	0	0	0	1	4951	1161	41	2		2	EDN1	6	12294560	Silent	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		12294560	158820507	11	54895										
TFAP2B	0	genome.wustl.edu	37	chr6	50811097	50811097	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcgacaaggaggagaaacacAggaaatgaaaaatttttaaa	10	4	0	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	6	50811097	50811097	A	G	SNP	TFAP2B	ENST00000263046	human	ensembl	69_37n	1	known	missense	c.1402	p.R468G	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196	45	0	0	35	18	33.96	-	-	-	G	50811097	A	G	50811097	3	3	635	1	0	0	0	0	1	0	0	0	15883	179	7	5	1401	5	TFAP2B	6	50811097	Missense_Mutation	SNP	A	TCGA-C8-A12Y-01A-11D-A12B-09	38516537	50811097	120303970	12	54896										
EPDR1	0	genome.wustl.edu	37	chr7	37960286	37960286	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	cagtggcagcaggcagtggcAgcaggcagtggcccaggcag							TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	7	37960286	37960286	A	-	DEL	EPDR1	ENST00000559325	human	ensembl	69_37n	1	known	frame_shift_del	c.105	p.A36fs	0.042	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	37	0	0	38	5	11.11	-	-	-	-	37960286	A	-	37960286	7	5	635	1	0	1	0	1	0	0	0	0	5200	175	7	0	107	0	EPDR1	7	37960286	Frame_Shift_Del	DEL	A	TCGA-C8-A12Y-01A-11D-A12B-09		37960286	121178377	13	54897										
TEX15	0	genome.wustl.edu	37	chr8	30705650	30705650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taattaatattttatcacagCttttcccaaaagaattatga	3	6	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	8	30705650	30705650	C	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.884	p.S295N	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	127	0	0	85	35	29.17	-	-	-	T	30705650	C	T	30705650	3	4	635	1	0	0	0	0	1	0	0	0	15874	797	28	4	7501	4	TEX15	8	30705650	Missense_Mutation	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09		30705650	115658372	14	54898										
KIAA0146	0	genome.wustl.edu	37	chr8	48508402	48508402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gattattccaagtggaagttGccctgttattctgaatactt	8	7	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	8	48508402	48508402	G	A	SNP	KIAA0146	ENST00000297423	human	ensembl	69_37n	1	known	missense	c.1127	p.C376Y	0.964	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	446	1	0.22	284	127	30.9	-	-	-	A	48508402	G	A	48508402	3	1	635	1	0	0	0	0	1	0	0	0	8209	1319	46	4	1161	4	KIAA0146	8	48508402	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09	17802752	48508402	97855620	15	54899										
VLDLR	0	genome.wustl.edu	37	chr9	2643403	2643403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtccctggagcagtgtggccGtcagccagtcatacacacca	11	14	2	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	9	2643403	2643403	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.692	p.R231H	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	33	0	0	25	10	28.57	-	-	-	A	2643403	G	A	2643403	3	1	635	1	0	0	0	0	1	0	0	0	17271	1145	40	1	710	1	VLDLR	9	2643403	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		2643403	138570028	16	54900										
FRMPD2	0	genome.wustl.edu	37	chr10	49431219	49431219	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atcctcaggaagagtgtgaaGgtattcatggaggtcttctg	13	6	4	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	10	49431219	49431219	G	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	silent	c.1263	p.T421	0.994	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	163	0	0	143	29	16.86	-	-	-	T	49431219	G	T	49431219	2	4	635	1	0	0	0	0	0	0	0	1	6107	987	35	4		4	FRMPD2	10	49431219	Silent	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		49431219	86103528	17	54901										
NDUFS3	0	genome.wustl.edu	37	chr11	47605938	47605938	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccaagagttccgcaaatttGacctgaacagcccctgggag	10	13	0	3			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	11	47605938	47605938	G	T	SNP	NDUFS3	ENST00000263774	human	ensembl	69_37n	1	known	missense	c.700	p.D234Y	1.000	NULL	pfam_NADH_UbQ_OxRdtase_30kDa_su,tigrfam_NADH_DH_suC	-	no_errors	NDUFS3	HGNC	ENSG00000213619	193	0	0	138	47	25.41	-	-	-	T	47605938	G	T	47605938	3	4	635	1	0	0	0	0	1	0	0	0	10365	1290	45	2	726	2	NDUFS3	11	47605938	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		47605938	87400578	18	54902										
ATG2A	0	genome.wustl.edu	37	chr11	64668020	64668020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgccgcccgctgcccccctgCgtgcgccatgagttctgggg	14	17	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	11	64668020	64668020	C	T	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.3820	p.A1274T	0.008	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	54	0	0	28	17	37.78	-	-	-	T	64668020	C	T	64668020	3	4	635	1	0	0	0	0	1	0	0	0	1097	755	27	1	1450	1	ATG2A	11	64668020	Missense_Mutation	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09	17062082	64668020	70338496	19	54903										
ALG9	0	genome.wustl.edu	37	chr11	111740957	111740957	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actaaagaaatcacctactgGctcccagtagttgaatgttt	7	9	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	11	111740957	111740957	G	A	SNP	ALG9	ENST00000524386	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ALG9	HGNC	ENSG00000086848	72	0	0	80	10	11.11	-	-	-	A	111740957	G	A	111740957	1	1	635	0	1	0	0	0	0	0	0	0	524	1203	42	4		4	ALG9	11	111740957	RNA	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09	47072937	111740957	23265559	20	54904										
A2ML1	0	genome.wustl.edu	37	chr12	8975820	8975820	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcccggctaaatttcccctcCgttcagaaggtttgtttgga	10	11	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	12	8975820	8975820	C	A	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	silent	c.105	p.S35	0.801	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	227	0	0	184	79	30.04	-	-	-	A	8975820	C	A	8975820	2	1	635	1	0	0	0	0	0	0	0	1	5	639	23	3		3	A2ML1	12	8975820	Silent	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09		8975820	124876075	21	54905										
PLEKHA5	0	genome.wustl.edu	37	chr12	19459905	19459905	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcctactcctaacccacttaCtcagactggcgctgttccac	6	17	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	12	19459905	19459905	C	A	SNP	PLEKHA5	ENST00000510738	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.803	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	240	0	0	246	62	20.13	-	-	-	A	19459905	C	A	19459905	1	1	635	0	1	0	0	0	0	0	0	0	12133	580	20	4		4	PLEKHA5	12	19459905	RNA	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09	10484085	19459905	114391990	22	54906										
FLT1	0	genome.wustl.edu	37	chr13	29005430	29005430	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tggtcaattcgtcgccttacGgaagctctcttatttttcta	7	10	3	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	13	29005430	29005430	G	A	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	silent	c.831	p.S277	0.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	328	0	0	105	128	54.94	-	-	-	A	29005430	G	A	29005430	2	1	635	1	0	0	0	0	0	0	0	1	5987	1103	39	1		1	FLT1	13	29005430	Silent	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		29005430	86164448	23	54907										
RYR3	0	genome.wustl.edu	37	chr15	33873763	33873763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcttaaatgtctacaatagcGtagcacactttgcagggatt	9	8	1	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	15	33873763	33873763	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.1492	p.V498I	0.902	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	223	0	0	187	28	13.02	-	-	-	A	33873763	G	A	33873763	3	1	635	1	0	0	0	0	1	0	0	0	13856	1145	40	1	1546	1	RYR3	15	33873763	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		33873763	68657629	24	54908										
USP14	0	genome.wustl.edu	37	chr18	210024	210024	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aagtatgaacccttttctttTgctgatggtaagtaacattc	7	7	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	18	210024	210024	T	C	SNP	USP14	ENST00000261601	human	ensembl	69_37n	1	known	silent	c.1218	p.F406	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,smart_Ubiquitin,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557	545	0	0	343	170	33.14	-	-	-	C	210024	T	C	210024	2	2	635	1	0	0	0	0	0	0	0	1	17142	1809	63	5		5	USP14	18	210024	Silent	SNP	T	TCGA-C8-A12Y-01A-11D-A12B-09		210024	77867224	25	54909										
DSC3	0	genome.wustl.edu	37	chr18	28574329	28574329	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gtcttcattctgattacatcGatgcaatttctgtaaaattt	5	7	4	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	18	28574329	28574329	G	A	SNP	DSC3	ENST00000360428	human	ensembl	69_37n	-1	known	nonsense	c.2503	p.R835*	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762	88	0	0	111	42	27.45	-	-	-	A	28574329	G	A	28574329	4	1	635	1	0	0	0	0	0	1	0	0	4802	1066	37	1	191	1	DSC3	18	28574329	Nonsense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09	28364305	28574329	49502919	26	54910										
MOCOS	0	genome.wustl.edu	37	chr18	33785222	33785222	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctggatgacaaagggaacAtcattggttactcccaggtg	12	8	1	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	18	33785222	33785222	A	G	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	missense	c.1201	p.I401V	0.001	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	299	0	0	260	86	24.78	-	-	-	G	33785222	A	G	33785222	3	3	635	1	0	0	0	0	1	0	0	0	9761	217	8	5	1223	5	MOCOS	18	33785222	Missense_Mutation	SNP	A	TCGA-C8-A12Y-01A-11D-A12B-09	5210893	33785222	44292026	27	54911										
NOTCH3	0	genome.wustl.edu	37	chr19	15281153	15281153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggttctcacttcatgcccagCgcgtcctggcccacgggttc	11	16	2	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	19	15281153	15281153	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	silent	c.5103	p.A1701	0.323	pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	32	0	0	18	9	33.33	-	-	-	T	15281153	C	T	15281153	2	4	635	1	0	0	0	0	0	0	0	1	10622	755	27	1		1	NOTCH3	19	15281153	Silent	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09		15281153	43847830	28	54912										
SUPT5H	0	genome.wustl.edu	37	chr19	39949691	39949691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agtattacatgaagaaatacGccaagtcatctgtgggagag	11	6	2	3			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	19	39949691	39949691	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.436	p.A146T	1.000	pfam_Spt5_N,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	137	0	0	105	16	13.22	-	-	-	A	39949691	G	A	39949691	3	1	635	1	0	0	0	0	1	0	0	0	15490	1087	38	1	458	1	SUPT5H	19	39949691	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09	24668538	39949691	19179292	29	54913										
ZFP28	0	genome.wustl.edu	37	chr19	57061548	57061548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caacagtgacctgggatcagCaggtaaggatgtccctctcc	11	12	2	1			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	19	57061548	57061548	C	T	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	missense	c.800	p.A267V	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	156	0	0	236	60	20.27	-	-	-	T	57061548	C	T	57061548	3	4	635	1	0	0	0	0	1	0	0	0	17738	710	25	4	822	4	ZFP28	19	57061548	Missense_Mutation	SNP	C	TCGA-C8-A12Y-01A-11D-A12B-09	17111857	57061548	2067435	30	54914										
YTHDF1	0	genome.wustl.edu	37	chr20	61835025	61835025	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tctccgttactgagctgtccGtaggtggtgaggtatggaat	14	7	1	2			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	20	61835025	61835025	G	A	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	silent	c.267	p.Y89	0.258	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	260	0	0	171	162	48.65	-	-	-	A	61835025	G	A	61835025	2	1	635	1	0	0	0	0	0	0	0	1	17595	1140	40	1		1	YTHDF1	20	61835025	Silent	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		61835025	1190495	31	54915										
SH3KBP1	0	genome.wustl.edu	37	chrX	19568118	19568118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagggactgggacggaggccGcctccctgtagcttttggtc	16	11	0	0			TCGA-C8-A12Y-01A-11D-A12B-09	TCGA-C8-A12Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5c0a1a0-3d38-497b-9f47-107f06659cb1	9fdfe86f-477c-410d-8258-c253254ffe13	X	19568118	19568118	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.1468	p.R490W	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	345	1	0.29	222	105	31.72	-	-	-	A	19568118	G	A	19568118	3	1	635	1	0	0	0	0	1	0	0	0	14344	1086	38	1	549	1	SH3KBP1	23	19568118	Missense_Mutation	SNP	G	TCGA-C8-A12Y-01A-11D-A12B-09		19568118	135702442	32	54916										
ABCD3	0	genome.wustl.edu	37	chr1	94946144	94946144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	agaatatagatatgttaattCtcggctcatcacaaacaggt	7	7	3	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	1	94946144	94946144	C	T	SNP	ABCD3	ENST00000454898	human	ensembl	69_37n	1	known	missense	c.881	p.S294F	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528	123	0	0	22	17	43.59	-	-	-	T	94946144	C	T	94946144	3	4	636	1	0	0	0	0	1	0	0	0	62	913	32	2	874	2	ABCD3	1	94946144	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09		94946144	154304477	1	54917										
FLG	0	genome.wustl.edu	37	chr1	152286754	152286754	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tgtcttctttctcttcaagtCtttcacttagcctcttccta	3	13	7	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	1	152286754	152286754	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.608	p.R203T	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	148	0	0	78	65	45.45	-	-	-	G	152286754	C	G	152286754	3	3	636	1	0	0	0	0	1	0	0	0	5968	913	32	2	11581	2	FLG	1	152286754	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	57340610	152286754	96963867	2	54918										
ATP8B2	0	genome.wustl.edu	37	chr1	154313476	154313476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gtacatcttctccgacaagaCgggcaccctcacccagaaca	7	16	3	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	1	154313476	154313476	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.1280	p.T427M	1.000	superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	118	0	0	82	13	13.68	-	-	-	T	154313476	C	T	154313476	3	4	636	1	0	0	0	0	1	0	0	0	1199	536	19	1	1460	1	ATP8B2	1	154313476	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	2026722	154313476	94937145	3	54919										
ANGPTL1	0	genome.wustl.edu	37	chr1	178834294	178834294	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ggagacacatgggtgtcttgTcgggaaaatatcctcaagca	12	8	2	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	1	178834294	178834294	T	G	SNP	ANGPTL1	ENST00000234816	human	ensembl	69_37n	-1	known	silent	c.618	p.R206	0.999	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL1	HGNC	ENSG00000116194	99	0	0	80	16	16.67	-	-	-	G	178834294	T	G	178834294	2	3	636	1	0	0	0	0	0	0	0	1	613	1654	58	5		5	ANGPTL1	1	178834294	Silent	SNP	T	TCGA-C8-A12Z-01A-11D-A10Y-09	24520818	178834294	70416327	4	54920										
ANGPTL1	0	genome.wustl.edu	37	chr1	178834752	178834752	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tattctttgttcaggtaccaGgaatgtgtatgcacatttct	8	7	3	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	1	178834752	178834752	G	C	SNP	ANGPTL1	ENST00000234816	human	ensembl	69_37n	-1	known	missense	c.160	p.L54V	0.916	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL1	HGNC	ENSG00000116194	331	0	0	294	84	22.22	-	-	-	C	178834752	G	C	178834752	3	2	636	1	0	0	0	0	1	0	0	0	613	991	35	4	1331	4	ANGPTL1	1	178834752	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	458	178834752	70415869	5	54921										
PUM2	0	genome.wustl.edu	37	chr2	20511409	20511409	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tttctcaggtccatctgtttCagcatctctagtgccctgag	8	12	4	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	2	20511409	20511409	C	T	SNP	PUM2	ENST00000361078	human	ensembl	69_37n	-1	known	missense	c.364	p.E122K	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917	259	0	0	81	45	35.71	-	-	-	T	20511409	C	T	20511409	3	4	636	1	0	0	0	0	1	0	0	0	12909	835	29	2	2898	2	PUM2	2	20511409	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09		20511409	222687964	6	54922										
IMMT	0	genome.wustl.edu	37	chr2	86397875	86397875	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ctgtctggtttacatacactCaattttaacttgttcttgtt	5	8	3	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	2	86397875	86397875	C	G	SNP	IMMT	ENST00000410111	human	ensembl	69_37n	-1	known	missense	c.652	p.E218Q	0.870	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305	229	0	0	67	30	30.93	-	-	-	G	86397875	C	G	86397875	3	3	636	1	0	0	0	0	1	0	0	0	7772	835	29	2	1664	2	IMMT	2	86397875	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	65886466	86397875	156801498	7	54923										
ATG16L1	0	genome.wustl.edu	37	chr2	234164823	234164823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ggctgaaaagcatgacgtacCaaacaggcacgagataaggt	12	8	0	3			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	2	234164823	234164823	C	T	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.191	p.P64L	1.000	pfam_Autophagy-rel_prot_16	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	102	0	0	42	13	23.64	-	-	-	T	234164823	C	T	234164823	3	4	636	1	0	0	0	0	1	0	0	0	1095	594	21	4	197	4	ATG16L1	2	234164823	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	147766948	234164823	9034550	8	54924										
AGAP1	0	genome.wustl.edu	37	chr2	236715952	236715952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gtgcggacagcattgggagcGgccgagccatcccaattaaa	13	11	0	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	2	236715952	236715952	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	missense	c.1027	p.G343S	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	67	0	0	27	14	34.15	-	-	-	A	236715952	G	A	236715952	3	1	636	1	0	0	0	0	1	0	0	0	366	1116	39	1	1061	1	AGAP1	2	236715952	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	2551129	236715952	6483421	9	54925										
ITGA9	0	genome.wustl.edu	37	chr3	37778398	37778398	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	acttcctttttcactagtatGaattcagcgtgatctttgat	6	8	3	3			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	3	37778398	37778398	G	A	SNP	ITGA9	ENST00000264741	human	ensembl	69_37n	1	known	missense	c.2158	p.E720K	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	198	0	0	94	43	31.39	-	-	-	A	37778398	G	A	37778398	3	1	636	1	0	0	0	0	1	0	0	0	7937	1291	45	2	2236	2	ITGA9	3	37778398	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		37778398	160244032	10	54926										
ACAD11	0	genome.wustl.edu	37	chr3	132277859	132277859	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ggcttggtcccgcagctccaTtgttgcgattgctgaaagat	12	10	0	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	3	132277859	132277859	T	C	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.2299	p.M767V	0.226	superfamily_AcylCo_DH/oxidase_C	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	177	0	0	66	28	29.79	-	-	-	C	132277859	T	C	132277859	3	2	636	1	0	0	0	0	1	0	0	0	109	1493	52	5	47	5	ACAD11	3	132277859	Missense_Mutation	SNP	T	TCGA-C8-A12Z-01A-11D-A10Y-09	94499461	132277859	65744571	11	54927										
ADIPOQ	0	genome.wustl.edu	37	chr3	186572475	186572475	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	accttcacaggctttcttctCtaccatgacaccaactgatc	4	15	3	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	3	186572475	186572475	C	T	SNP	ADIPOQ	ENST00000320741	human	ensembl	69_37n	1	known	silent	c.717	p.L239	0.999	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	ADIPOQ	HGNC	ENSG00000181092	24	0	0	3	4	57.14	-	-	-	T	186572475	C	T	186572475	2	4	636	1	0	0	0	0	0	0	0	1	317	900	32	2		2	ADIPOQ	3	186572475	Silent	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	54294616	186572475	11449955	12	54928										
FRYL	0	genome.wustl.edu	37	chr4	48584566	48584566	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ctgcttgtttccactgatttAttaattgtaccaacatcttt	4	9	1	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	4	48584566	48584566	A	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.1934	p.I645R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	300	0	0	36	59	62.11	-	-	-	C	48584566	A	C	48584566	3	2	636	1	0	0	0	0	1	0	0	0	6113	449	16	5	7287	5	FRYL	4	48584566	Missense_Mutation	SNP	A	TCGA-C8-A12Z-01A-11D-A10Y-09		48584566	142569710	13	54929										
BANK1	0	genome.wustl.edu	37	chr4	102951292	102951292	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gatgacagtgaatatgacatGatattggccaatctgagtat	10	5	1	5			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	4	102951292	102951292	G	A	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	missense	c.1770	p.M590I	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	183	0	0	85	33	27.97	-	-	-	A	102951292	G	A	102951292	3	1	636	1	0	0	0	0	1	0	0	0	1313	1290	45	2	1808	2	BANK1	4	102951292	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	54366726	102951292	88202984	14	54930										
CLCN3	0	genome.wustl.edu	37	chr4	170628037	170628037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	aggtggtgtgacaagaatgaCtgtctccctggtggttattg	14	6	1	3			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	4	170628037	170628037	C	T	SNP	CLCN3	ENST00000347613	human	ensembl	69_37n	1	known	missense	c.1769	p.T590I	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572	284	0	0	126	113	47.28	-	-	-	T	170628037	C	T	170628037	3	4	636	1	0	0	0	0	1	0	0	0	3494	565	20	4	1807	4	CLCN3	4	170628037	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	67676745	170628037	20526239	15	54931										
C5orf42	0	genome.wustl.edu	37	chr5	37169245	37169245	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tctgctcaacttctttttttCtggcttcagtgttatactgg	7	9	5	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	5	37169245	37169245	C	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.6881	p.R2294T	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	214	1	0.47	111	41	26.97	-	-	-	G	37169245	C	G	37169245	3	3	636	1	0	0	0	0	1	0	0	0	2322	913	32	2	2788	2	C5orf42	5	37169245	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09		37169245	143746015	16	54932										
PIK3R1	0	genome.wustl.edu	37	chr5	67591127	67591129	+	In_Frame_Del	DEL	AGA	AGA	-													0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	aaccagaccttatccagctgAgaaagacgagagaccaatac							TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	5	67591127	67591129	AGA	-	DEL	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_del	c.1720_1722	p.R574in_frame_del	1.000:1.000:1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	200	0	0	97	29	22.83	-	-	-	-	67591129	AGA	-	67591127	7	5	636	1	0	1	0	1	0	0	0	0	11992	296	11	0	1896	0	PIK3R1	5	67591127	In_Frame_Del	DEL	AGA	TCGA-C8-A12Z-01A-11D-A10Y-09	30421882	67591127	113324133	17	54933										
PCDHB10	0	genome.wustl.edu	37	chr5	140572714	140572714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tatatccagagctagtgttgGacaaagcactggatcgggag	13	7	0	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	5	140572714	140572714	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	missense	c.589	p.D197N	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	65	0	0	25	17	40.48	-	-	-	A	140572714	G	A	140572714	3	1	636	1	0	0	0	0	1	0	0	0	11608	1174	41	2	591	2	PCDHB10	5	140572714	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	72981587	140572714	40342546	18	54934										
CD83	0	genome.wustl.edu	37	chr6	14131848	14131848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gcaaaatggttctttcgacgCccccaatgaaaggccctatt	8	12	1	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	6	14131848	14131848	C	T	SNP	CD83	ENST00000379153	human	ensembl	69_37n	1	known	missense	c.251	p.A84V	0.001	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD83	HGNC	ENSG00000112149	116	0	0	57	36	38.71	-	-	-	T	14131848	C	T	14131848	3	4	636	1	0	0	0	0	1	0	0	0	3070	739	26	4	261	4	CD83	6	14131848	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09		14131848	156983219	19	54935										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27805754	27805754	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	cttggccttgtggtggctctCagttttcttaggcagcagca	12	10	2	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	6	27805754	27805754	C	T	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.364	p.E122K	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	194	0	0	78	32	28.83	-	-	-	T	27805754	C	T	27805754	3	4	636	1	0	0	0	0	1	0	0	0	7188	835	29	2	32	2	HIST1H2AK	6	27805754	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	13673906	27805754	143309313	20	54936										
FUT9	0	genome.wustl.edu	37	chr6	96651553	96651553	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tatggcttcttgacggtaagCacaaatcccttcgtgtttga	9	9	1	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	6	96651553	96651553	C	T	SNP	FUT9	ENST00000302103	human	ensembl	69_37n	1	known	silent	c.522	p.S174	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT9	HGNC	ENSG00000172461	67	0	0	36	11	23.4	-	-	-	T	96651553	C	T	96651553	2	4	636	1	0	0	0	0	0	0	0	1	6160	709	25	4		4	FUT9	6	96651553	Silent	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	68845799	96651553	74463514	21	54937										
METTL2B	0	genome.wustl.edu	37	chr7	128141820	128141820	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ttattttccacactagaggaActggacacgcttttcaccac	6	12	1	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	7	128141820	128141820	A	G	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	silent	c.987	p.E329	0.938	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	113	0	0	28	9	24.32	-	-	-	G	128141820	A	G	128141820	2	3	636	1	0	0	0	0	0	0	0	1	9571	40	2	5		5	METTL2B	7	128141820	Silent	SNP	A	TCGA-C8-A12Z-01A-11D-A10Y-09		128141820	30996843	22	54938										
EPHA1	0	genome.wustl.edu	37	chr7	143104718	143104718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	acttaccccatcttttggggGatccagcagccagcccagct	9	15	1	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	7	143104718	143104718	G	A	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.136	p.P46S	0.997	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	140	0	0	53	41	43.62	-	-	-	A	143104718	G	A	143104718	3	1	636	1	0	0	0	0	1	0	0	0	5202	1174	41	2	2862	2	EPHA1	7	143104718	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	14962898	143104718	16033945	23	54939										
RGS22	0	genome.wustl.edu	37	chr8	100994227	100994227	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ttcaataatcttctgggcttGctctactggaatgtcaattt	7	8	5	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	8	100994227	100994227	G	A	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	nonsense	c.3298	p.Q1100*	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	185	0	0	202	39	16.18	-	-	-	A	100994227	G	A	100994227	4	1	636	1	0	0	0	0	0	1	0	0	13389	1328	46	4	520	4	RGS22	8	100994227	Nonsense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		100994227	45369795	24	54940										
NUP98	0	genome.wustl.edu	37	chr11	3700873	3700873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	atcctgaattaggctgctgcGctctggaggtgccaggtctt	13	10	2	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	11	3700873	3700873	G	A	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.4984	p.R1662C	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	92	0	0	24	23	47.92	-	-	-	A	3700873	G	A	3700873	3	1	636	1	0	0	0	0	1	0	0	0	10846	1087	38	1	430	1	NUP98	11	3700873	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		3700873	131305643	25	54941										
DAGLA	0	genome.wustl.edu	37	chr11	61508016	61508016	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gaggtgatcatctcgccagcCatgctgcatgagcacctgcc	11	14	2	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	11	61508016	61508016	C	G	SNP	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	silent	c.1935	p.A645	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	85	0	0	26	13	33.33	-	-	-	G	61508016	C	G	61508016	2	3	636	1	0	0	0	0	0	0	0	1	4258	581	21	4		4	DAGLA	11	61508016	Silent	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	57807143	61508016	73498500	26	54942										
STAT2	0	genome.wustl.edu	37	chr12	56748596	56748596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ccagttcattgagagtttccTgcagaatcttctgctctttg	8	10	4	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	12	56748596	56748596	T	C	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.599	p.Q200R	0.998	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	264	0	0	193	47	19.58	-	-	-	C	56748596	T	C	56748596	3	2	636	1	0	0	0	0	1	0	0	0	15356	1580	55	5	2028	5	STAT2	12	56748596	Missense_Mutation	SNP	T	TCGA-C8-A12Z-01A-11D-A10Y-09		56748596	77103299	27	54943										
MYCBP2	0	genome.wustl.edu	37	chr13	77817214	77817214	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ctcttccttcctctaatctgTgccttctgattacacgttgc	5	14	4	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	13	77817214	77817214	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.2609	p.H870R	1.000	superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	461	0	0	162	82	33.47	-	-	-	C	77817214	T	C	77817214	3	2	636	1	0	0	0	0	1	0	0	0	10090	1696	59	5	11695	5	MYCBP2	13	77817214	Missense_Mutation	SNP	T	TCGA-C8-A12Z-01A-11D-A10Y-09		77817214	37352664	28	54944										
DHRS4	0	genome.wustl.edu	37	chr14	24424404	24424404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tggggaaggcggaggaccggGagcggctggtggccacggtg	23	8	0	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	14	24424404	24424404	G	A	SNP	DHRS4	ENST00000313250	human	ensembl	69_37n	1	known	missense	c.289	p.E97K	0.994	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS4	HGNC	ENSG00000157326	92	0	0	46	26	36.11	-	-	-	A	24424404	G	A	24424404	3	1	636	1	0	0	0	0	1	0	0	0	4528	1175	41	2	295	2	DHRS4	14	24424404	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		24424404	82925136	29	54945										
RYR3	0	genome.wustl.edu	37	chr15	33954810	33954810	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	cccttggagagtctcaggacGaaggctctgagtatgctgac	13	10	2	3			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	15	33954810	33954810	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.5079	p.T1693	0.223	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	99	0	0	40	16	28.57	-	-	-	A	33954810	G	A	33954810	2	1	636	1	0	0	0	0	0	0	0	1	13856	1045	37	1		1	RYR3	15	33954810	Silent	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		33954810	68576582	30	54946										
PLA2G4F	0	genome.wustl.edu	37	chr15	42436738	42436738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gctctgggcggaagtgaagcGggaggtgaatatgtccagca	17	7	1	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	15	42436738	42436738	G	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.1891	p.R631C	1.000	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	77	0	0	52	7	11.86	-	-	-	A	42436738	G	A	42436738	3	1	636	1	0	0	0	0	1	0	0	0	12080	1116	39	1	680	1	PLA2G4F	15	42436738	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	8481928	42436738	60094654	31	54947										
MPV17L	0	genome.wustl.edu	37	chr16	15501892	15501892	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gtttttcccagcagagtggtGacggcacattcaagtcagct	11	10	2	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	16	15501892	15501892	G	C	SNP	MPV17L	ENST00000396385	human	ensembl	69_37n	1	known	missense	c.514	p.D172H	0.994	NULL	pfam_Mpv17_PMP22	-	no_errors	MPV17L	HGNC	ENSG00000156968	189	0	0	80	46	36.51	-	-	-	C	15501892	G	C	15501892	3	2	636	1	0	0	0	0	1	0	0	0	9818	1294	45	2	528	2	MPV17L	16	15501892	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		15501892	74852861	32	54948										
PAPD5	0	genome.wustl.edu	37	chr16	50259141	50259141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tagtaaacactcttcaaactCttcatcaggtccagtgtcgt	6	11	5	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	16	50259141	50259141	C	G	SNP	PAPD5	ENST00000436909	human	ensembl	69_37n	1	known	missense	c.1700	p.S567C	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD5	HGNC	ENSG00000121274	248	0	0	35	43	55.13	-	-	-	G	50259141	C	G	50259141	3	3	636	1	0	0	0	0	1	0	0	0	11498	913	32	2	1742	2	PAPD5	16	50259141	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	34757249	50259141	40095612	33	54949										
ACAP1	0	genome.wustl.edu	37	chr17	7251307	7251307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	tcatgggagccagaactagtGaaggtaacttagcgtattgt	12	6	1	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	17	7251307	7251307	G	A	SNP	ACAP1	ENST00000158762	human	ensembl	69_37n	1	known	silent	c.1410	p.V470	0.999	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818	120	0	0	28	33	54.1	-	-	-	A	7251307	G	A	7251307	2	1	636	1	0	0	0	0	0	0	0	1	118	1277	45	2		2	ACAP1	17	7251307	Silent	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		7251307	73943903	34	54950										
TP53	0	genome.wustl.edu	37	chr17	7574002	7574002	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ccaaggcctcattcagctctCggaacatctcgaagcgctca	8	15	5	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	17	7574002	7574002	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342P	0.071	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0	8	8	50	-	-	-	G	7574002	C	G	7574002	3	3	636	1	0	0	0	0	1	0	0	0	16477	884	31	3	164	3	TP53	17	7574002	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	322695	7574002	73621208	35	54951										
JUP	0	genome.wustl.edu	37	chr17	39777865	39777865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	cttgctgaagaaccaatcctCggcatccttgcggttcttct	8	13	2	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	17	39777865	39777865	C	T	SNP	JUP	ENST00000540235	human	ensembl	69_37n	-1	known	missense	c.1291	p.E431K	0.997	pfam_F,superfamily_Prefoldin	pfam_F,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	140	1	0.71	41	28	40.58	-	-	-	T	39777865	C	T	39777865	3	4	636	1	0	0	0	0	1	0	0	0	8026	893	31	1		1	JUP	17	39777865	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	32203863	39777865	41417345	36	54952										
GH2	0	genome.wustl.edu	37	chr17	61958446	61958446	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ggaatagactctgagaagcaGagggaggtctgggggttctg	18	5	3	3			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	17	61958446	61958446	G	C	SNP	GH2	ENST00000332800	human	ensembl	69_37n	-1	known	silent	c.234	p.L78	0.991	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	138	0	0	137	32	18.82	-	-	-	C	61958446	G	C	61958446	2	2	636	1	0	0	0	0	0	0	0	1	6420	929	33	2		2	GH2	17	61958446	Silent	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	22180581	61958446	19236764	37	54953										
TRIP10	0	genome.wustl.edu	37	chr19	6751165	6751166	+	Frame_Shift_Ins	INS	-	-	A													0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gctggacccgggtcaggcggINSaaagagggaggcgagggcta							TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	19	6751165	6751166	-	A	INS	TRIP10	ENST00000313244	human	ensembl	69_37n	1	known	frame_shift_ins	c.1749_1750	p.E584fs	1.000:1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	35	0	0	6	8	57.14	-	-	-	A	6751166	-	A	6751165	7	5	636	1	0	1	1	0	0	0	0	0	16650	1161	41	0	1635	0	TRIP10	19	6751165	Frame_Shift_Ins	INS	-	TCGA-C8-A12Z-01A-11D-A10Y-09		6751165	52377818	38	54954										
IER2	0	genome.wustl.edu	37	chr19	13264146	13264146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	cgcccgggagctctacctctCggccaaggtggaggccctcg	14	16	2	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	19	13264146	13264146	C	T	SNP	IER2	ENST00000292433	human	ensembl	69_37n	1	known	missense	c.146	p.S49L	0.998	pfam_IER	pfam_IER	-	no_errors	IER2	HGNC	ENSG00000160888	12	0	0	0	5	100	-	-	-	T	13264146	C	T	13264146	3	4	636	1	0	0	0	0	1	0	0	0	7559	893	31	1	148	1	IER2	19	13264146	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	6512981	13264146	45864837	39	54955										
MX1	0	genome.wustl.edu	37	chr21	42807920	42807920	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	cgggcaagagctccgtgttgGaggcactgtcaggagttgcc	16	10	1	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	21	42807920	42807920	G	C	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	missense	c.262	p.E88Q	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	80	0	0	24	44	64.71	-	-	-	C	42807920	G	C	42807920	3	2	636	1	0	0	0	0	1	0	0	0	10069	1175	41	2	268	2	MX1	21	42807920	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		42807920	5321975	40	54956										
MKL1	0	genome.wustl.edu	37	chr22	40807871	40807871	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ttcggggatggcttctccttCcctggcagggatggcggctc	15	12	1	0			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	22	40807871	40807871	C	A	SNP	MKL1	ENST00000396617	human	ensembl	69_37n	-1	known	nonsense	c.2329	p.E777*	0.028	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL1	HGNC	ENSG00000196588	30	0	0	8	5	38.46	-	-	-	A	40807871	C	A	40807871	4	1	636	1	0	0	0	0	0	1	0	0	9672	842	30	2	480	2	MKL1	22	40807871	Nonsense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09		40807871	10496695	41	54957										
ARSA	0	genome.wustl.edu	37	chr22	51064659	51064659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	aggtcgttccctttccacacCgcaagagaccggagcagccg	11	15	0	1			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	22	51064659	51064659	C	T	SNP	ARSA	ENST00000216124	human	ensembl	69_37n	-1	known	missense	c.902	p.R301Q	0.980	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSA	HGNC	ENSG00000100299	37	0	0	15	5	25	-	-	-	T	51064659	C	T	51064659	3	4	636	1	0	0	0	0	1	0	0	0	991	652	23	1	643	1	ARSA	22	51064659	Missense_Mutation	SNP	C	TCGA-C8-A12Z-01A-11D-A10Y-09	10256788	51064659	239907	42	54958										
CRLF2	0	genome.wustl.edu	37	chrX	1314927	1314927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ataaagacagaaggaggagaGacaccatcagaaggatggcc	13	7	1	4			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	X	1314927	1314927	G	A	SNP	CRLF2	ENST00000381567	human	ensembl	69_37n	-1	known	missense	c.734	p.S245F	0.001	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF2	HGNC	ENSG00000205755	370	0	0	133	53	28.49	-	-	-	A	1314927	G	A	1314927	3	1	636	1	0	0	0	0	1	0	0	0	3917	942	33	2	43	2	CRLF2	23	1314927	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09		1314927	153955633	43	54959										
ZMYM3	0	genome.wustl.edu	37	chrX	70472831	70472831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	gaccgtggtccacctccgggGgagagggggctttatagagc	17	10	0	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	X	70472831	70472831	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.275	p.P92L	0.999	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	26	0	0	7	5	41.67	-	-	-	A	70472831	G	A	70472831	3	1	636	1	0	0	0	0	1	0	0	0	17797	1232	43	4	3951	4	ZMYM3	23	70472831	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	69157904	70472831	84797729	44	54960										
GDI1	0	genome.wustl.edu	37	chrX	153668757	153668757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.311111111111111	14	0.0105815210521487	2.29185185185185	3.536	1.81333333333333	0.706390272356082	1	8	ctgccttgagaccgtcaaccGcatcaagttgtacagtgagt	10	11	2	2			TCGA-C8-A12Z-01A-11D-A10Y-09	TCGA-C8-A12Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae68cac5-e561-4094-98fa-2303cdaa6dbb	812e038c-91bd-4e32-bf6b-99922a18b5c0	X	153668757	153668757	G	A	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	1	known	missense	c.623	p.R208H	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	115	0	0	59	21	25.93	-	-	-	A	153668757	G	A	153668757	3	1	636	1	0	0	0	0	1	0	0	0	6372	1087	38	1	645	1	GDI1	23	153668757	Missense_Mutation	SNP	G	TCGA-C8-A12Z-01A-11D-A10Y-09	83195926	153668757	1601803	45	54961										
DUSP27	0	genome.wustl.edu	37	chr1	167095568	167095568	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	caggagtggcagagccgaaaCgagaggtaccaagcagaagg	16	8	0	3			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	1	167095568	167095568	C	T	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	silent	c.1200	p.N400	0.988	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	34	0	0	33	20	37.74	-	-	-	T	167095568	C	T	167095568	2	4	637	1	0	0	0	0	0	0	0	1	4859	535	19	1		1	DUSP27	1	167095568	Silent	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09		167095568	82155053	1	54962										
ASTN1	0	genome.wustl.edu	37	chr1	176913118	176913118	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gccaccacaagaccatctggCagttgctggtctaaaccacg	9	14	2	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	1	176913118	176913118	C	A	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.2310	p.L770	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	88	0	0	86	43	33.08	-	-	-	A	176913118	C	A	176913118	2	1	637	1	0	0	0	0	0	0	0	1	1068	697	25	4		4	ASTN1	1	176913118	Silent	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09	9817550	176913118	72337503	2	54963										
OTOF	0	genome.wustl.edu	37	chr2	26696148	26696148	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	aagggcgggtgcagcagctcGttctctgggaggtcctgggg	19	9	1	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	2	26696148	26696148	G	A	SNP	OTOF	ENST00000426958	human	ensembl	69_37n	-1	putative	nonsense	c.151	p.R51*	0.956	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OTOF	HGNC	ENSG00000115155	55	0	0	58	11	15.94	-	-	-	A	26696148	G	A	26696148	4	1	637	1	0	0	0	0	0	1	0	0	11376	1136	40	1	2665	1	OTOF	2	26696148	Nonsense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		26696148	216503225	3	54964										
WDR33	0	genome.wustl.edu	37	chr2	128463985	128463985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	taccccagttactgccactcCggccccctcgagaaggggtg	11	16	0	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	2	128463985	128463985	C	T	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3923	p.R1308Q	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	26	0	0	24	10	29.41	-	-	-	T	128463985	C	T	128463985	3	4	637	1	0	0	0	0	1	0	0	0	17384	652	23	1	91	1	WDR33	2	128463985	Missense_Mutation	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09	101767837	128463985	114735388	4	54965										
TRAK2	0	genome.wustl.edu	37	chr2	202245617	202245617	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gaggccaaaaaattttcagaGagatgcactcgaggctcaaa	10	8	2	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	2	202245617	202245617	G	C	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	silent	c.2394	p.L798	0.931	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	96	0	0	65	40	38.1	-	-	-	C	202245617	G	C	202245617	2	2	637	1	0	0	0	0	0	0	0	1	16546	929	33	2		2	TRAK2	2	202245617	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	73781632	202245617	40953756	5	54966										
SPHKAP	0	genome.wustl.edu	37	chr2	228883499	228883499	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	atgcctgttgtcattggggtCgattatcatatttttgtggt	11	5	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	2	228883499	228883499	C	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.2071	p.D691Y	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	227	0	0	152	68	30.91	-	-	-	A	228883499	C	A	228883499	3	1	637	1	0	0	0	0	1	0	0	0	15139	884	31	3	3055	3	SPHKAP	2	228883499	Missense_Mutation	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09	26637882	228883499	14315874	6	54967										
MAGI1	0	genome.wustl.edu	37	chr3	65342480	65342480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccctccgcttctctggggacCgcctcttggggccgttggcg	14	16	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	3	65342480	65342480	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3962	p.R1321Q	0.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	70	0	0	25	12	32.43	-	-	-	T	65342480	C	T	65342480	3	4	637	1	0	0	0	0	1	0	0	0	9261	652	23	1	430	1	MAGI1	3	65342480	Missense_Mutation	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09		65342480	132679950	7	54968										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	117	0	0	70	80	53.33	-	-	-	G	178952085	A	G	178952085	3	3	637	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09	113609605	178952085	19070345	8	54969										
KIAA0922	0	genome.wustl.edu	37	chr4	154547305	154547305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ttcttttaatgcaggagacaGtgtttcacaaaatgattttc	7	6	2	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	4	154547305	154547305	G	T	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.4052	p.S1351I	0.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	421	1	0.24	225	93	29.15	-	-	-	T	154547305	G	T	154547305	3	4	637	1	0	0	0	0	1	0	0	0	8253	1029	36	4	4170	4	KIAA0922	4	154547305	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		154547305	36606971	9	54970										
DBN1	0	genome.wustl.edu	37	chr5	176885058	176885058	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	accaggcagtccctgccgcaCctgggtcccctccttctggg	11	18	1	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	5	176885058	176885058	C	G	SNP	DBN1	ENST00000292385	human	ensembl	69_37n	-1	known	splice_site	c.1782+1	e12+1	1.000	-	-	-	no_errors	DBN1	HGNC	ENSG00000113758	16	0	0	3	7	70	-	-	-	G	176885058	C	G	176885058	5	3	637	1	0	0	0	0	0	0	1	0	4284	521	18	4	184	4	DBN1	5	176885058	Splice_Site	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09		176885058	4030202	10	54971										
HIST1H3C	0	genome.wustl.edu	37	chr6	26045726	26045726	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ctaaagcagcccgtaagagcGctccggccaccggtggcgtg	14	14	0	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	6	26045726	26045726	G	C	SNP	HIST1H3C	ENST00000540144	human	ensembl	69_37n	1	known	missense	c.88	p.A30P	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3C	HGNC	ENSG00000196532	23	0	0	35	9	20.45	-	-	-	C	26045726	G	C	26045726	3	2	637	1	0	0	0	0	1	0	0	0	7208	1087	38	3	90	3	HIST1H3C	6	26045726	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		26045726	145069341	11	54972										
ZKSCAN4	0	genome.wustl.edu	37	chr6	28214862	28214862	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	agggccacatcttccattttCagcaaaccctaaaacaatag	5	12	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	6	28214862	28214862	C	T	SNP	ZKSCAN4	ENST00000377294	human	ensembl	69_37n	-1	known	silent	c.663	p.L221	0.988	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626	77	0	0	93	23	19.66	-	-	-	T	28214862	C	T	28214862	2	4	637	1	0	0	0	0	0	0	0	1	17785	813	29	2		2	ZKSCAN4	6	28214862	Silent	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09	2169136	28214862	142900205	12	54973										
HACE1	0	genome.wustl.edu	37	chr6	105244542	105244542	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	tacaataccatgttttctcgGaggtcttcattctgtgtcat	7	9	5	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	6	105244542	105244542	G	C	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	silent	c.804	p.L268	0.198	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	195	0	0	128	906	87.45	-	-	-	C	105244542	G	C	105244542	2	2	637	1	0	0	0	0	0	0	0	1	6991	1161	41	2		2	HACE1	6	105244542	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	77029680	105244542	65870525	13	54974										
KIFC2	0	genome.wustl.edu	37	chr8	145692700	145692700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	aggggactcagccagcccctCgggtccggcccccctctcca	11	20	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	8	145692700	145692700	C	T	SNP	KIFC2	ENST00000301332	human	ensembl	69_37n	1	known	missense	c.445	p.R149W	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIFC2	HGNC	ENSG00000167702	20	0	0	12	8	40	-	-	-	T	145692700	C	T	145692700	3	4	637	1	0	0	0	0	1	0	0	0	8365	875	31	1	459	1	KIFC2	8	145692700	Missense_Mutation	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09		145692700	671322	14	54975										
PSIP1	0	genome.wustl.edu	37	chr9	15469016	15469016	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gttgcattgtgacctgaagtGaagcaagttcatccaaggcc	11	9	1	3			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	9	15469016	15469016	G	A	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	missense	c.1145	p.S382L	1.000	pfam_LEDGF	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	133	1	0.75	72	27	27.27	-	-	-	A	15469016	G	A	15469016	3	1	637	1	0	0	0	0	1	0	0	0	12743	1294	45	2	463	2	PSIP1	9	15469016	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		15469016	125744415	15	54976										
PTCHD3	0	genome.wustl.edu	37	chr10	27702625	27702625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ttggtggtgaaatggccctgCacgaagcgccgctccgcctt	13	13	0	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	10	27702625	27702625	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	silent	c.555	p.V185	0.389	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	18	0	0	40	8	16.67	-	-	-	T	27702625	C	T	27702625	2	4	637	1	0	0	0	0	0	0	0	1	12814	697	25	4		4	PTCHD3	10	27702625	Silent	SNP	C	TCGA-C8-A130-01A-31D-A10Y-09		27702625	107832122	16	54977										
XRRA1	0	genome.wustl.edu	37	chr11	74570222	74570222	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccttgttgtaggccaggctaAggtatctcagctctgggaag	13	9	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	11	74570222	74570222	A	C	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	missense	c.1127	p.L376R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	80	0	0	108	56	33.94	-	-	-	C	74570222	A	C	74570222	3	2	637	1	0	0	0	0	1	0	0	0	17558	72	3	5	1283	5	XRRA1	11	74570222	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09		74570222	60436294	17	54978										
NOX4	0	genome.wustl.edu	37	chr11	89106652	89106652	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccaaatgttgctttggtttcAgttggacactaaaaaaaaat	7	6	1	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	11	89106652	89106652	A	G	SNP	NOX4	ENST00000529343	human	ensembl	69_37n	-1	known	missense	c.638	p.L213P	1.000	NULL	pfam_Fe3_Rdtase_TM_dom,tigrfam_Znf_LSD1	-	no_errors	NOX4	HGNC	ENSG00000086991	110	0	0	41	48	53.93	-	-	-	G	89106652	A	G	89106652	3	3	637	1	0	0	0	0	1	0	0	0	10630	175	7	5	681	5	NOX4	11	89106652	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09	14536430	89106652	45899864	18	54979										
CCDC91	0	genome.wustl.edu	37	chr12	28459679	28459679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	tttttatgtggtttagattcAgcaatcaacacacactcatc	5	9	3	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	12	28459679	28459679	A	C	SNP	CCDC91	ENST00000381259	human	ensembl	69_37n	1	known	missense	c.272	p.Q91P	1.000	NULL	NULL	-	no_errors	CCDC91	HGNC	ENSG00000123106	98	0	0	95	22	18.8	-	-	-	C	28459679	A	C	28459679	3	2	637	1	0	0	0	0	1	0	0	0	2897	188	7	5	286	5	CCDC91	12	28459679	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09		28459679	105392216	19	54980										
METAP2	0	genome.wustl.edu	37	chr12	95905673	95905673	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccctattttttataacagtgAaaccaatccgtaatctaaat	3	9	1	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	12	95905673	95905673	A	T	SNP	METAP2	ENST00000323666	human	ensembl	69_37n	1	known	nonsense	c.967	p.K323*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	-	no_errors	METAP2	HGNC	ENSG00000111142	132	0	0	287	36	11.11	-	-	-	T	95905673	A	T	95905673	4	4	637	1	0	0	0	0	0	1	0	0	9558	247	9	5	1001	5	METAP2	12	95905673	Nonsense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09	67445994	95905673	37946222	20	54981										
DCUN1D2	0	genome.wustl.edu	37	chr13	114128499	114128499	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	aaactgataaaaatctttaaActtggctgtgtccttcagct	6	8	2	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	13	114128499	114128499	A	G	SNP	DCUN1D2	ENST00000478244	human	ensembl	69_37n	-1	known	missense	c.460	p.F154L	1.000	pfam_PONY_dom	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D2	HGNC	ENSG00000150401	125	1	0.79	144	40	21.74	-	-	-	G	114128499	A	G	114128499	3	3	637	1	0	0	0	0	1	0	0	0	4345	43	2	5	335	5	DCUN1D2	13	114128499	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09		114128499	1041379	21	54982										
OR4K2	0	genome.wustl.edu	37	chr14	20345239	20345239	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	tttctcacagacaagattctGtctgtgttttataccatctt	5	9	4	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	14	20345239	20345239	G	T	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	silent	c.813	p.L271	0.586	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	175	0	0	199	57	22.18	-	-	-	T	20345239	G	T	20345239	2	4	637	1	0	0	0	0	0	0	0	1	11145	1364	48	4		4	OR4K2	14	20345239	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		20345239	87004301	22	54983										
NRXN3	0	genome.wustl.edu	37	chr14	79933659	79933659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	cgcggtctgaccgccttgccGtgggcttcagcaccactgtg	13	15	2	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	14	79933659	79933659	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.3325	p.V1109M	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	43	0	0	75	21	21.43	-	-	-	A	79933659	G	A	79933659	3	1	637	1	0	0	0	0	1	0	0	0	10740	1145	40	1	2532	1	NRXN3	14	79933659	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	59588420	79933659	27415881	23	54984										
SPRED1	0	genome.wustl.edu	37	chr15	38591723	38591723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ctgtgctgacttttttatccGtggagagcgactcagggaca	12	9	1	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	15	38591723	38591723	G	A	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.182	p.R61H	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	90	0	0	61	23	27.38	-	-	-	A	38591723	G	A	38591723	3	1	637	1	0	0	0	0	1	0	0	0	15183	1145	40	1	188	1	SPRED1	15	38591723	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		38591723	63939669	24	54985										
ISLR	0	genome.wustl.edu	37	chr15	74468053	74468053	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ggagatcaccagccccaacgTgggcactgatgggcgtgccc	14	14	1	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	15	74468053	74468053	T	C	SNP	ISLR	ENST00000249842	human	ensembl	69_37n	1	known	missense	c.854	p.V285A	0.026	pfam_Ig_I-set,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ISLR	HGNC	ENSG00000129009	12	0	0	24	8	25	-	-	-	C	74468053	T	C	74468053	3	2	637	1	0	0	0	0	1	0	0	0	7912	1696	59	5	856	5	ISLR	15	74468053	Missense_Mutation	SNP	T	TCGA-C8-A130-01A-31D-A10Y-09	35876330	74468053	28063339	25	54986										
TMC5	0	genome.wustl.edu	37	chr16	19481012	19481012	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gccttctctagcatggccaaGtatttccggaacaacttcat	7	12	2	0			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	16	19481012	19481012	G	A	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	silent	c.1647	p.K549	0.915	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	127	0	0	127	32	20	-	-	-	A	19481012	G	A	19481012	2	1	637	1	0	0	0	0	0	0	0	1	16083	1020	36	4		4	TMC5	16	19481012	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		19481012	70873741	26	54987										
TP53	0	genome.wustl.edu	37	chr17	7578538	7578538	+	Frame_Shift_Del	DEL	T	T	-													0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccagttggcaaaacatcttgTtgagggcaggggagtactgt							TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	17	7578538	7578538	T	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.392	p.N131fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	64	0	0	33	44	56.41	-	-	-	-	7578538	T	-	7578538	7	5	637	1	0	1	0	1	0	0	0	0	16477	1725	60	0	906	0	TP53	17	7578538	Frame_Shift_Del	DEL	T	TCGA-C8-A130-01A-31D-A10Y-09		7578538	73616672	27	54988										
ELP2	0	genome.wustl.edu	37	chr18	33721133	33721133	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	atgtggcaatgatgattgcaGaattcacatatttgctcaac	8	7	2	3			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	18	33721133	33721133	G	C	SNP	ELP2	ENST00000358232	human	ensembl	69_37n	1	known	missense	c.557	p.R186T	0.992	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	191	0	0	118	36	23.38	-	-	-	C	33721133	G	C	33721133	3	2	637	1	0	0	0	0	1	0	0	0	5117	942	33	2	579	2	ELP2	18	33721133	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		33721133	44356115	28	54989										
CRKL	0	genome.wustl.edu	37	chr22	21272296	21272296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ggtgtctcgccaggaggcgcAgacccggctccagggccagc	16	15	1	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	22	21272296	21272296	A	G	SNP	CRKL	ENST00000354336	human	ensembl	69_37n	1	known	missense	c.74	p.Q25R	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRKL	HGNC	ENSG00000099942	23	0	0	8	13	61.9	-	-	-	G	21272296	A	G	21272296	3	3	637	1	0	0	0	0	1	0	0	0	3915	188	7	5	76	5	CRKL	22	21272296	Missense_Mutation	SNP	A	TCGA-C8-A130-01A-31D-A10Y-09		21272296	30032270	29	54990										
MYO18B	0	genome.wustl.edu	37	chr22	26422713	26422713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ggagttcgtggaagggctccGgaggaagagagcccagagag	19	7	0	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	22	26422713	26422713	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.6773	p.R2258Q	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	16	0	0	21	9	30	-	-	-	A	26422713	G	A	26422713	3	1	637	1	0	0	0	0	1	0	0	0	10138	1116	39	1	6939	1	MYO18B	22	26422713	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	5150417	26422713	24881853	30	54991										
CFP	0	genome.wustl.edu	37	chrX	47489181	47489181	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	ccctcacctgtggctggcagGgtgagcagcaggagcagcgg	17	12	1	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	X	47489181	47489181	G	C	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	silent	c.63	p.T21	0.162	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	17	0	0	23	9	28.12	-	-	-	C	47489181	G	C	47489181	2	2	637	1	0	0	0	0	0	0	0	1	3322	1219	43	4		4	CFP	23	47489181	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09		47489181	107781379	31	54992										
KIF4A	0	genome.wustl.edu	37	chrX	69510350	69510350	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	attcccgtaagagtggcgctGcgttgtcgccctctggtccc	12	14	1	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	X	69510350	69510350	G	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	silent	c.42	p.L14	1.000	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	79	0	0	131	28	17.5	-	-	-	T	69510350	G	T	69510350	2	4	637	1	0	0	0	0	0	0	0	1	8355	1306	46	4		4	KIF4A	23	69510350	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	22021169	69510350	85760210	32	54993										
LUZP4	0	genome.wustl.edu	37	chrX	114524334	114524334	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	gatgcagggaagatggcttcGtttcggaagctaacgctttc	13	8	0	1			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	X	114524334	114524334	G	A	SNP	LUZP4	ENST00000371920	human	ensembl	69_37n	1	known	silent	c.9	p.S3	0.031	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021	89	0	0	70	12	14.63	-	-	-	A	114524334	G	A	114524334	2	1	637	1	0	0	0	0	0	0	0	1	9154	1132	40	1		1	LUZP4	23	114524334	Silent	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	45013984	114524334	40746226	33	54994										
BRCC3	0	genome.wustl.edu	37	chrX	154317544	154317544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.533155053429117	1.65581395348837	2.75968992248062	1.18272425249169	1	1	0	tcatttattttcagatgttcGcacacaagccatgtaccaga	6	10	2	2			TCGA-C8-A130-01A-31D-A10Y-09	TCGA-C8-A130-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da70101d-10c2-47ab-bce1-7757dcbb08a2	b5de4094-f708-472f-aeb6-a7ed61223af5	X	154317544	154317544	G	A	SNP	BRCC3	ENST00000399042	human	ensembl	69_37n	1	known	missense	c.410	p.R137H	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	BRCC3	HGNC	ENSG00000185515	165	0	0	164	31	15.9	-	-	-	A	154317544	G	A	154317544	3	1	637	1	0	0	0	0	1	0	0	0	1508	1087	38	1	432	1	BRCC3	23	154317544	Missense_Mutation	SNP	G	TCGA-C8-A130-01A-31D-A10Y-09	39793210	154317544	953016	34	54995										
THRAP3	0	genome.wustl.edu	37	chr1	36759501	36759501	+	Missense_Mutation	SNP	G	G	A													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gaaaacatggtttggctcatGatgaaatgaaaagtccccgg							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	36759501	36759501	G	A	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.2080	p.D694N	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	197	0	0	140	29	17.16	-	-	-	A	36759501	G	A	36759501	3	1	638	1	0	0	0	0	1	0	0	0	15969	1290	45	2	2102	2	THRAP3	1	36759501	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09		36759501	212491120	1	54996	432	2								
THRAP3	0	genome.wustl.edu	37	chr1	36759502	36759502	+	Missense_Mutation	SNP	A	A	T													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	aaaacatggtttggctcatgAtgaaatgaaaagtccccggg							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	36759502	36759502	A	T	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.2081	p.D694V	0.998	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	198	0	0	139	28	16.77	-	-	-	T	36759502	A	T	36759502	3	4	638	1	0	0	0	0	1	0	0	0	15969	333	12	5	2103	5	THRAP3	1	36759502	Missense_Mutation	SNP	A	TCGA-C8-A131-01A-11D-A10Y-09	1	36759502	212491119	2	54997	432	2								
SSX2IP	0	genome.wustl.edu	37	chr1	85135415	85135415	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	tccatatcacttcccagcttCaaattctgtgtctccacatt	3	14	4	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	85135415	85135415	C	A	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	missense	c.375	p.L125F	1.000	pfam_Afadin/alpha-actinin-bd	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	219	0	0	284	38	11.8	-	-	-	A	85135415	C	A	85135415	3	1	638	1	0	0	0	0	1	0	0	0	15295	825	29	2	1513	2	SSX2IP	1	85135415	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	48375913	85135415	164115206	3	54998										
F5	0	genome.wustl.edu	37	chr1	169541460	169541460	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	aatattagatttatcttaccTtctgataatttactgtacct	3	7	2	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	169541460	169541460	T	G	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.372	p.E124D	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	154	0	0	151	24	13.71	-	-	-	G	169541460	T	G	169541460	3	3	638	1	0	0	0	0	1	0	0	0	5385	1623	56	5	6394	5	F5	1	169541460	Missense_Mutation	SNP	T	TCGA-C8-A131-01A-11D-A10Y-09	84406045	169541460	79709161	4	54999										
QSOX1	0	genome.wustl.edu	37	chr1	180151338	180151338	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gacctgtcccagcacaaaggCgtggcggtgcgcagggtgct	16	12	0	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	180151338	180151338	C	T	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	silent	c.636	p.G212	0.019	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	98	0	0	71	21	22.34	-	-	-	T	180151338	C	T	180151338	2	4	638	1	0	0	0	0	0	0	0	1	12966	755	27	1		1	QSOX1	1	180151338	Silent	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	10609878	180151338	69099283	5	55000										
PGBD5	0	genome.wustl.edu	37	chr1	230503869	230503869	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gctcaagttctgaccacacaGatggtggtggtgaggaggag	16	7	2	3			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	230503869	230503869	G	T	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.146	p.S49Y	0.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	261	0	0	224	124	35.63	-	-	-	T	230503869	G	T	230503869	3	4	638	1	0	0	0	0	1	0	0	0	11858	957	33	2		2	PGBD5	1	230503869	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	50352531	230503869	18746752	6	55001										
ACTN2	0	genome.wustl.edu	37	chr1	236902735	236902735	+	Frame_Shift_Del	DEL	A	A	-													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	caagccacccaaggtgcaggAgaaatgccagctggagatca							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	236902735	236902735	A	-	DEL	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	frame_shift_del	c.1010	p.E337fs	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	108	0	0	89	18	16.36	-	-	-	-	236902735	A	-	236902735	7	5	638	1	0	1	0	1	0	0	0	0	205	304	11	0	1048	0	ACTN2	1	236902735	Frame_Shift_Del	DEL	A	TCGA-C8-A131-01A-11D-A10Y-09	6398866	236902735	12347886	7	55002										
CEP170	0	genome.wustl.edu	37	chr1	243329334	243329334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttggaagctggggaagagttCgtctccttctctctccctgg	12	11	3	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	1	243329334	243329334	C	T	SNP	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	missense	c.1928	p.R643Q	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	168	0	0	86	40	31.75	-	-	-	T	243329334	C	T	243329334	3	4	638	1	0	0	0	0	1	0	0	0	3279	884	31	1	2888	1	CEP170	1	243329334	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	6426599	243329334	5921287	8	55003										
DPYSL5	0	genome.wustl.edu	37	chr2	27169788	27169788	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttccctgcaggctctcagatCgatgaccatgttccaaagcg	9	13	1	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	2	27169788	27169788	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	69_37n	1	known	silent	c.1620	p.I540	0.987	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	84	0	0	45	9	16.67	-	-	-	T	27169788	C	T	27169788	2	4	638	1	0	0	0	0	0	0	0	1	4785	874	31	1		1	DPYSL5	2	27169788	Silent	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		27169788	216029585	9	55004										
HAAO	0	genome.wustl.edu	37	chr2	42997323	42997323	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctgtactgctcagagctgaaGaacctgcaaggacgaacagg	12	10	1	3			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	2	42997323	42997323	G	A	SNP	HAAO	ENST00000294973	human	ensembl	69_37n	-1	known	silent	c.444	p.F148	1.000	pfam_3hydroanth_dOase,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882	63	0	0	48	28	36.84	-	-	-	A	42997323	G	A	42997323	2	1	638	1	0	0	0	0	0	0	0	1	6988	933	33	2		2	HAAO	2	42997323	Silent	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	15827535	42997323	200202050	10	55005										
WDR54	0	genome.wustl.edu	37	chr2	74651009	74651009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gtcaggccgggtgctggtgtTtgacatcccagcaaagggtc	15	10	1	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	2	74651009	74651009	T	C	SNP	WDR54	ENST00000348227	human	ensembl	69_37n	1	known	missense	c.434	p.F145S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR54	HGNC	ENSG00000005448	119	0	0	53	29	35.37	-	-	-	C	74651009	T	C	74651009	3	2	638	1	0	0	0	0	1	0	0	0	17403	1841	64	5	452	5	WDR54	2	74651009	Missense_Mutation	SNP	T	TCGA-C8-A131-01A-11D-A10Y-09	31653686	74651009	168548364	11	55006										
KLHL23	0	genome.wustl.edu	37	chr2	170592266	170592266	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttcaaagaagctgcctgctcAccgaaaataagatccgctcc	7	13	2	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	2	170592266	170592266	A	C	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	1	known	missense	c.742	p.T248P	0.595	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	74	0	0	76	10	11.63	-	-	-	C	170592266	A	C	170592266	3	2	638	1	0	0	0	0	1	0	0	0	8431	159	6	5	744	5	KLHL23	2	170592266	Missense_Mutation	SNP	A	TCGA-C8-A131-01A-11D-A10Y-09	95941257	170592266	72607107	12	55007										
PARP15	0	genome.wustl.edu	37	chr3	122345796	122345796	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttgtcatttttcaacctgagCtgctaaatatattctacgac	5	9	3	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	3	122345796	122345796	C	A	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.1354	p.L452M	0.008	pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	226	0	0	124	65	34.39	-	-	-	A	122345796	C	A	122345796	3	1	638	1	0	0	0	0	1	0	0	0	11532	796	28	4	1457	4	PARP15	3	122345796	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		122345796	75676634	13	55008										
PIK3CA	0	genome.wustl.edu	37	chr3	178916936	178916936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	aattgaaccagtaggcaaccGtgaagaaaagatcctcaatc	8	9	1	4			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	3	178916936	178916936	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.323	p.R108H	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	79	0	0	84	23	21.5	-	-	-	A	178916936	G	A	178916936	3	1	638	1	0	0	0	0	1	0	0	0	11987	1145	40	1	325	1	PIK3CA	3	178916936	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	56571140	178916936	19105494	14	55009										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	142	0	0	90	45	33.33	-	-	-	G	178952085	A	G	178952085	3	3	638	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A131-01A-11D-A10Y-09	35149	178952085	19070345	15	55010										
FAM131A	0	genome.wustl.edu	37	chr3	184055444	184055444	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	tatgatttctgtgctgggcaAaatgtttctgtggcagcgtg	13	6	2	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	3	184055444	184055444	A	G	SNP	FAM131A	ENST00000383847	human	ensembl	69_37n	1	known	missense	c.26	p.K9R	1.000	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182	156	0	0	133	21	13.64	-	-	-	G	184055444	A	G	184055444	3	3	638	1	0	0	0	0	1	0	0	0	5479	14	1	5	28	5	FAM131A	3	184055444	Missense_Mutation	SNP	A	TCGA-C8-A131-01A-11D-A10Y-09	5103359	184055444	13966986	16	55011										
CENPE	0	genome.wustl.edu	37	chr4	104115811	104115811	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttctgatgtatatacaacttCttctgtgagatcagcaacat	6	8	4	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	4	104115811	104115811	C	T	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.508	p.E170K	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	293	0	0	179	50	21.83	-	-	-	T	104115811	C	T	104115811	3	4	638	1	0	0	0	0	1	0	0	0	3259	922	32	2	7773	2	CENPE	4	104115811	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		104115811	87038465	17	55012										
IRX4	0	genome.wustl.edu	37	chr5	1878883	1878884	+	In_Frame_Ins	INS	-	-	TTT													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	aagtcactaagctccagctcINScttctcctctttgcccacgg							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	5	1878883	1878884	-	TTT	INS	IRX4	ENST00000231357	human	ensembl	69_37n	-1	known	in_frame_ins	c.760_759	p.253in_frame_insK	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX4	HGNC	ENSG00000113430	25	0	0	16	5	23.81	-	-	-	TTT	1878884	-	TTT	1878883	7	5	638	1	0	1	1	0	0	0	0	0	7900	864	30	0	803	0	IRX4	5	1878883	In_Frame_Ins	INS	-	TCGA-C8-A131-01A-11D-A10Y-09		1878883	179036377	18	55013										
OSMR	0	genome.wustl.edu	37	chr5	38904586	38904586	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	agtgaatggagtggtcagaaCttcaccacacttgaagctgg	12	8	2	3			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	5	38904586	38904586	C	A	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	missense	c.1266	p.N422K	0.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	100	0	0	157	25	13.74	-	-	-	A	38904586	C	A	38904586	3	1	638	1	0	0	0	0	1	0	0	0	11365	564	20	4	1334	4	OSMR	5	38904586	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	37025703	38904586	142010674	19	55014										
ADAMTS19	0	genome.wustl.edu	37	chr5	129040021	129040021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gtcctctctaccagacccagGgaggctgaagactgtgagga	13	11	1	4			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	5	129040021	129040021	G	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.3231	p.R1077S	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	140	0	0	100	19	15.97	-	-	-	T	129040021	G	T	129040021	3	4	638	1	0	0	0	0	1	0	0	0	264	1223	43	4	3313	4	ADAMTS19	5	129040021	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	90135435	129040021	51875239	20	55015										
PCDHB12	0	genome.wustl.edu	37	chr5	140589610	140589610	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cgagacagagactctggggaCaacggaaagatggtttgttc	14	7	1	3			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	5	140589610	140589610	C	G	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.1131	p.D377E	0.049	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	112	0	0	68	21	23.6	-	-	-	G	140589610	C	G	140589610	3	3	638	1	0	0	0	0	1	0	0	0	11610	477	17	4	1133	4	PCDHB12	5	140589610	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	11549589	140589610	40325650	21	55016										
GRPEL2	0	genome.wustl.edu	37	chr5	148730599	148730599	+	Frame_Shift_Del	DEL	C	C	-													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctcactctggagaaggtcttCcgagggttgttgcttttaga							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	5	148730599	148730599	C	-	DEL	GRPEL2	ENST00000329271	human	ensembl	69_37n	1	known	frame_shift_del	c.432	p.R145fs	0.999	pfam_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL2	HGNC	ENSG00000164284	70	0	0	61	14	18.67	-	-	-	-	148730599	C	-	148730599	7	5	638	1	0	1	0	1	0	0	0	0	6858	854	30	0	446	0	GRPEL2	5	148730599	Frame_Shift_Del	DEL	C	TCGA-C8-A131-01A-11D-A10Y-09	8140989	148730599	32184661	22	55017										
UNC5CL	0	genome.wustl.edu	37	chr6	41000851	41000851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cagccatttgcgggcttcgcGccccacaggtgcctccagca	11	17	0	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	6	41000851	41000851	G	A	SNP	UNC5CL	ENST00000244565	human	ensembl	69_37n	-1	known	missense	c.721	p.R241C	0.028	NULL	pfam_ZU5,pfam_Death,superfamily_DEATH-like,smart_ZU5,smart_Death,pfscan_Death,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602	37	0	0	17	7	28	-	-	-	A	41000851	G	A	41000851	3	1	638	1	0	0	0	0	1	0	0	0	17091	1087	38	1	859	1	UNC5CL	6	41000851	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09		41000851	130114216	23	55018										
DCAF4L2	0	genome.wustl.edu	37	chr8	88885659	88885659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ggaccaggcatcagggatctGgaaactgcaaagcatgccag	13	10	2	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	8	88885659	88885659	G	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.541	p.Q181K	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	158	1	0.63	167	53	24.09	-	-	-	T	88885659	G	T	88885659	3	4	638	1	0	0	0	0	1	0	0	0	4304	1357	47	4	650	4	DCAF4L2	8	88885659	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09		88885659	57478363	24	55019										
STXBP1	0	genome.wustl.edu	37	chr9	130430385	130430385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gaccagcggcatcggggaggCacgggtgaaggaggtgctcc	19	10	0	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	9	130430385	130430385	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	69_37n	1	known	missense	c.821	p.A274V	0.797	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	47	0	0	26	10	27.78	-	-	-	T	130430385	C	T	130430385	3	4	638	1	0	0	0	0	1	0	0	0	15443	710	25	4	859	4	STXBP1	9	130430385	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		130430385	10783046	25	55020										
ADAMTSL2	0	genome.wustl.edu	37	chr9	136412259	136412259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cacggtggtcaagtacaggcGgcccatggatgtctatgaga	14	9	2	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	9	136412259	136412259	G	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	69_37n	1	known	missense	c.1190	p.R397Q	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859	70	0	0	39	20	33.9	-	-	-	A	136412259	G	A	136412259	3	1	638	1	0	0	0	0	1	0	0	0	275	1116	39	1	893	1	ADAMTSL2	9	136412259	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	5981874	136412259	4801172	26	55021										
GPSM1	0	genome.wustl.edu	37	chr9	139231983	139231983	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	tgggcaacacccactatttgTtggggaacttcacagaggcc	11	11	1	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	9	139231983	139231983	T	C	SNP	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	silent	c.664	p.L222	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	37	0	0	23	9	25.71	-	-	-	C	139231983	T	C	139231983	2	2	638	1	0	0	0	0	0	0	0	1	6785	1722	60	5		5	GPSM1	9	139231983	Silent	SNP	T	TCGA-C8-A131-01A-11D-A10Y-09	2819724	139231983	1981448	27	55022										
MYO3A	0	genome.wustl.edu	37	chr10	26243835	26243835	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gagattgaagcagaatataaCatcttaaaagcactttctga	7	6	2	4			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	10	26243835	26243835	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.201	p.N67	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	147	0	0	153	22	12.5	-	-	-	T	26243835	C	T	26243835	2	4	638	1	0	0	0	0	0	0	0	1	10148	477	17	4		4	MYO3A	10	26243835	Silent	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		26243835	109290912	28	55023										
PDCD11	0	genome.wustl.edu	37	chr10	105179384	105179384	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	atccatcctggaatgctgctCattggttttgtgaagagcat	10	8	1	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	10	105179384	105179384	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	silent	c.2196	p.L732	0.971	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	144	0	0	160	33	17.1	-	-	-	T	105179384	C	T	105179384	2	4	638	1	0	0	0	0	0	0	0	1	11690	813	29	2		2	PDCD11	10	105179384	Silent	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	78935549	105179384	30355363	29	55024										
PCSK7	0	genome.wustl.edu	37	chr11	117089867	117089867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cgttggtgacccactctgcaCggcgatcctcatactgaaag	10	13	2	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	11	117089867	117089867	C	A	SNP	PCSK7	ENST00000320934	human	ensembl	69_37n	-1	known	missense	c.1337	p.R446L	0.006	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613	46	0	0	36	11	23.4	-	-	-	A	117089867	C	A	117089867	3	1	638	1	0	0	0	0	1	0	0	0	11678	536	19	3	1048	3	PCSK7	11	117089867	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		117089867	17916649	30	55025										
NOP2	0	genome.wustl.edu	37	chr12	6670928	6670928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cgggcaacatgctggaggctCcctgcagcatgtagtgccca	13	13	0	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	6670928	6670928	C	T	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.1109	p.G370E	1.000	pfam_Fmu/NOL1/Nop2p,prints_RCMT,tigrfam_Nop2p	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	80	0	0	50	11	18.03	-	-	-	T	6670928	C	T	6670928	3	4	638	1	0	0	0	0	1	0	0	0	10610	855	30	2	1353	2	NOP2	12	6670928	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		6670928	127180967	31	55026										
TAS2R31	0	genome.wustl.edu	37	chr12	11183883	11183883	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	attagcaaaatttccaataaCaaatagaaccactaccacac	2	11	0	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	11183883	11183883	C	G	SNP	TAS2R31	ENST00000390675	human	ensembl	69_37n	-1	known	missense	c.52	p.V18L	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436	76	0	0	48	15	23.81	-	-	-	G	11183883	C	G	11183883	3	3	638	1	0	0	0	0	1	0	0	0	15666	478	17	4	881	4	TAS2R31	12	11183883	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	4512955	11183883	122668012	32	55027										
KRAS	0	genome.wustl.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	25398284	25398284	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	229	0	0	159	96	37.65	-	-	-	A	25398284	C	A	25398284	3	1	638	1	0	0	0	0	1	0	0	0	8491	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	14214401	25398284	108453611	33	55028										
NR4A1	0	genome.wustl.edu	37	chr12	52451283	52451283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cttgtcgatgtccctgccttCgcctgcctctctgcccttgt	8	17	1	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	52451283	52451283	C	T	SNP	NR4A1	ENST00000550582	human	ensembl	69_37n	1	putative	missense	c.314	p.S105L	0.991	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	NR4A1	HGNC	ENSG00000123358	137	0	0	66	31	31.63	-	-	-	T	52451283	C	T	52451283	3	4	638	1	0	0	0	0	1	0	0	0	10705	883	31	1	1527	1	NR4A1	12	52451283	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	27052999	52451283	81400612	34	55029										
AMDHD1	0	genome.wustl.edu	37	chr12	96360231	96360231	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cactgggaaagtctcacacaCacggatcgttggaagttggc	12	10	1	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	96360231	96360231	C	A	SNP	AMDHD1	ENST00000266736	human	ensembl	69_37n	1	known	missense	c.1138	p.H380N	1.000	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344	95	0	0	67	25	26.88	-	-	-	A	96360231	C	A	96360231	3	1	638	1	0	0	0	0	1	0	0	0	567	478	17	4	1168	4	AMDHD1	12	96360231	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	43908948	96360231	37491664	35	55030										
TBX3	0	genome.wustl.edu	37	chr12	115118711	115118711	+	Frame_Shift_Del	DEL	G	G	-													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	tgtttgtctgaaatgttgttGgtgagtttcagtttgtggaa							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	12	115118711	115118711	G	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.630	p.N211fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	197	0	0	133	15	10.07	-	-	-	-	115118711	G	-	115118711	7	5	638	1	0	1	0	1	0	0	0	0	15754	1335	47	0	1629	0	TBX3	12	115118711	Frame_Shift_Del	DEL	G	TCGA-C8-A131-01A-11D-A10Y-09	18758480	115118711	18733184	36	55031										
RCBTB1	0	genome.wustl.edu	37	chr13	50134175	50134175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cttggttggtcgtcccattcCcaagctggctatatccattg	9	12	0	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	13	50134175	50134175	C	A	SNP	RCBTB1	ENST00000258646	human	ensembl	69_37n	-1	known	missense	c.323	p.G108V	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,prints_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_Reg_chr_condens,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	133	0	0	117	21	15.22	-	-	-	A	50134175	C	A	50134175	3	1	638	1	0	0	0	0	1	0	0	0	13254	623	22	4	1308	4	RCBTB1	13	50134175	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		50134175	65035703	37	55032										
DOCK9	0	genome.wustl.edu	37	chr13	99575591	99575591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctcctcgtcaacttcatagaCatgaactggaagtttatcca	6	11	2	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	13	99575591	99575591	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.454	p.V152I	1.000	pfam_DUF3398	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	146	0	0	139	40	22.35	-	-	-	T	99575591	C	T	99575591	3	4	638	1	0	0	0	0	1	0	0	0	4729	478	17	4	6024	4	DOCK9	13	99575591	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	49441416	99575591	15594287	38	55033										
TEP1	0	genome.wustl.edu	37	chr14	20873630	20873630	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cttgaggataaactcaggctCcaggagggcaagttcacgac	12	10	2	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	14	20873630	20873630	C	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	nonsense	c.850	p.E284*	0.999	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	296	0	0	218	99	31.23	-	-	-	A	20873630	C	A	20873630	4	1	638	1	0	0	0	0	0	1	0	0	15854	864	30	2	7241	2	TEP1	14	20873630	Nonsense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		20873630	86475910	39	55034										
MYH7	0	genome.wustl.edu	37	chr14	23894523	23894523	+	Frame_Shift_Del	DEL	G	G	-													0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	agctttttgtactccattctGgcgagcacacctcgggactg							TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	14	23894523	23894523	G	-	DEL	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	frame_shift_del	c.2391	p.R798fs	0.693	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	131	0	0	65	31	32.29	-	-	-	-	23894523	G	-	23894523	7	5	638	1	0	1	0	1	0	0	0	0	10111	1335	47	0	3496	0	MYH7	14	23894523	Frame_Shift_Del	DEL	G	TCGA-C8-A131-01A-11D-A10Y-09	3020893	23894523	83455017	40	55035										
AKAP6	0	genome.wustl.edu	37	chr14	33291628	33291628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	caagtgcatctcatgaaatgGatcgcatttcatataaaagt	7	7	2	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	14	33291628	33291628	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.4609	p.D1537N	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	81	0	0	62	8	11.43	-	-	-	A	33291628	G	A	33291628	3	1	638	1	0	0	0	0	1	0	0	0	455	1174	41	2	4655	2	AKAP6	14	33291628	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	9397105	33291628	74057912	41	55036										
NTHL1	0	genome.wustl.edu	37	chr16	2090176	2090176	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	cggcgcgggtctcctctgggGacttggttgccttcttggtc	15	12	3	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	16	2090176	2090176	G	A	SNP	NTHL1	ENST00000219066	human	ensembl	69_37n	-1	known	missense	c.773	p.S258F	0.869	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	87	0	0	48	15	23.81	-	-	-	A	2090176	G	A	2090176	3	1	638	1	0	0	0	0	1	0	0	0	10771	1174	41	2	173	2	NTHL1	16	2090176	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09		2090176	88264577	42	55037										
AARS	0	genome.wustl.edu	37	chr16	70295012	70295012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gtagatggttccaatgtgtaGcacataccctcctcggacct	9	12	0	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	16	70295012	70295012	G	A	SNP	AARS	ENST00000565361	human	ensembl	69_37n	-1	novel	missense	c.65	p.A22V	1.000	pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,pfscan_Ala-tRNA-synth_IIc_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AARS	HGNC	ENSG00000090861	248	0	0	144	60	29.41	-	-	-	A	70295012	G	A	70295012	3	1	638	1	0	0	0	0	1	0	0	0	19	962	34	4	1222	4	AARS	16	70295012	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	68204836	70295012	20059741	43	55038										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	77	0	0	39	18	31.58	-	-	-	T	7578406	C	T	7578406	3	4	638	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		7578406	73616804	44	55039										
SUPT6H	0	genome.wustl.edu	37	chr17	27001584	27001584	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	atgaccgcctggaggatgatGattttgacctcattgaggag	13	7	1	5			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	17	27001584	27001584	G	A	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.298	p.D100N	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	258	0	0	159	91	36.25	-	-	-	A	27001584	G	A	27001584	3	1	638	1	0	0	0	0	1	0	0	0	15491	1290	45	2	308	2	SUPT6H	17	27001584	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	19423178	27001584	54193626	45	55040										
MRPL45	0	genome.wustl.edu	37	chr17	36453165	36453165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	acaagatggcagcccccataCctcaagggttctcttgttta	8	12	2	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	17	36453165	36453165	C	T	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	1	known	missense	c.16	p.P6S	0.010	NULL	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	309	0	0	209	25	10.68	-	-	-	T	36453165	C	T	36453165	3	4	638	1	0	0	0	0	1	0	0	0	9881	507	18	4		4	MRPL45	17	36453165	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	9451581	36453165	44742045	46	55041										
CACNA1G	0	genome.wustl.edu	37	chr17	48646591	48646591	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gtgaagatggtggccttgggCatctttgggaaaaagtgtta	15	4	1	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	17	48646591	48646591	C	G	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	silent	c.420	p.G140	0.925	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	400	0	0	250	123	32.98	-	-	-	G	48646591	C	G	48646591	2	3	638	1	0	0	0	0	0	0	0	1	2569	697	25	4		4	CACNA1G	17	48646591	Silent	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09	12193426	48646591	32548619	47	55042										
BAHCC1	0	genome.wustl.edu	37	chr17	79429821	79429821	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctacaaggccatcgtgcgggGcgaggagaccctgcgtgtcg	16	12	0	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	17	79429821	79429821	G	A	SNP	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	missense	c.7439	p.G2480D	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	51	0	0	28	17	37.78	-	-	-	A	79429821	G	A	79429821	3	1	638	1	0	0	0	0	1	0	0	0	1300	1203	42	4	7376	4	BAHCC1	17	79429821	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	30783230	79429821	1765389	48	55043										
PNPLA6	0	genome.wustl.edu	37	chr19	7601348	7601348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctcccaggtgtcacaatccaCctcctccctcgtggatacct	6	18	1	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	19	7601348	7601348	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	69_37n	1	known	missense	c.356	p.T119I	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	163	0	0	95	56	37.09	-	-	-	T	7601348	C	T	7601348	3	4	638	1	0	0	0	0	1	0	0	0	12243	507	18	4	370	4	PNPLA6	19	7601348	Missense_Mutation	SNP	C	TCGA-C8-A131-01A-11D-A10Y-09		7601348	51527635	49	55044										
RYR1	0	genome.wustl.edu	37	chr19	38951038	38951038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	gcggttcctccttggtggccGccatggtgaattcaagttcc	12	12	1	1			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	19	38951038	38951038	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2384	p.R795H	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	96	0	0	61	14	18.67	-	-	-	A	38951038	G	A	38951038	3	1	638	1	0	0	0	0	1	0	0	0	13854	1087	38	1	2462	1	RYR1	19	38951038	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	31349690	38951038	20177945	50	55045										
ZNF211	0	genome.wustl.edu	37	chr19	58153270	58153270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	tccaaccttaagaaccaccaGagagttcacactggagaaag	8	11	1	3			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	19	58153270	58153270	G	A	SNP	ZNF211	ENST00000407202	human	ensembl	69_37n	1	putative	missense	c.1426	p.E476K	0.013	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF211	HGNC	ENSG00000121417	201	0	0	152	17	10.06	-	-	-	A	58153270	G	A	58153270	3	1	638	1	0	0	0	0	1	0	0	0	17863	933	33	2	1469	2	ZNF211	19	58153270	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	19202232	58153270	975713	51	55046										
DOCK11	0	genome.wustl.edu	37	chrX	117699984	117699984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ctagtgccccaaaatgcgccGtcatgcttttgaactcaaga	8	12	2	2			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	X	117699984	117699984	G	A	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.710	p.R237H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	180	1	0.55	100	13	11.5	-	-	-	A	117699984	G	A	117699984	3	1	638	1	0	0	0	0	1	0	0	0	4721	1145	40	1	740	1	DOCK11	23	117699984	Missense_Mutation	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09		117699984	37570576	52	55047										
HAUS7	0	genome.wustl.edu	37	chrX	152722094	152722094	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0961538461538462	5	0.715651901048937	1.24806999485332	0	1.39207807118255	0.020979020979021	0.233153210425938	0	ttcttctccctggtgtcctcGaagtgctccatcaggctgca	9	14	3	0			TCGA-C8-A131-01A-11D-A10Y-09	TCGA-C8-A131-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df8c72f3-ca4f-4a15-8d58-976d9c796570	cb269dc6-19ce-4327-9c01-cb7484aa8387	X	152722094	152722094	G	A	SNP	HAUS7	ENST00000370212	human	ensembl	69_37n	-1	known	silent	c.492	p.F164	0.000	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397	40	0	0	23	6	20	-	-	-	A	152722094	G	A	152722094	2	1	638	1	0	0	0	0	0	0	0	1	7022	1049	37	1		1	HAUS7	23	152722094	Silent	SNP	G	TCGA-C8-A131-01A-11D-A10Y-09	35022110	152722094	2548466	53	55048										
C1orf173	0	genome.wustl.edu	37	chr1	75038620	75038620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ctccctcctccgatgtcgctGcctctctcagggctgctact	8	18	2	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	75038620	75038620	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.2774	p.A925V	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	251	0	0	160	19	10.61	-	-	-	A	75038620	G	A	75038620	3	1	639	1	0	0	0	0	1	0	0	0	2033	1319	46	4	1822	4	C1orf173	1	75038620	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		75038620	174212001	1	55049										
ZNF687	0	genome.wustl.edu	37	chr1	151261136	151261136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tgcaagccaattttcagaccCatctccgggaggcctgtctg	10	13	3	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	151261136	151261136	C	A	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	missense	c.2248	p.H750N	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	68	0	0	60	19	24.05	-	-	-	A	151261136	C	A	151261136	3	1	639	1	0	0	0	0	1	0	0	0	18188	594	21	4	2254	4	ZNF687	1	151261136	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	76222516	151261136	97989485	2	55050										
FLG2	0	genome.wustl.edu	37	chr1	152324739	152324739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tgagtagttccatgtctctcGtcaactatggattctgactc	8	10	3	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	152324739	152324739	G	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	silent	c.5523	p.D1841	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	675	1	0.15	469	145	23.5	-	-	-	A	152324739	G	A	152324739	2	1	639	1	0	0	0	0	0	0	0	1	5969	1136	40	1		1	FLG2	1	152324739	Silent	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	1063603	152324739	96925882	3	55051										
TBX19	0	genome.wustl.edu	37	chr1	168262381	168262381	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tctcttctcctgcctcgacaGataatgttgaattctctgca	6	12	3	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	168262381	168262381	G	C	SNP	TBX19	ENST00000367821	human	ensembl	69_37n	1	known	splice_site	c.469-1	e3-1	1.000	-	-	-	no_errors	TBX19	HGNC	ENSG00000143178	189	0	0	199	28	12.28	-	-	-	C	168262381	G	C	168262381	5	2	639	1	0	0	0	0	0	0	1	0	15749	956	33	2	478	2	TBX19	1	168262381	Splice_Site	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	15937642	168262381	80988240	4	55052										
CHI3L1	0	genome.wustl.edu	37	chr1	203151921	203151921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ttccccgcagacagtgctgcGctgagcaggagctgcttttt	12	12	0	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	203151921	203151921	G	A	SNP	CHI3L1	ENST00000404436	human	ensembl	69_37n	-1	known	missense	c.13	p.R5C	0.385	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHI3L1	HGNC	ENSG00000133048	108	0	0	90	21	18.92	-	-	-	A	203151921	G	A	203151921	3	1	639	1	0	0	0	0	1	0	0	0	3369	1078	38	1	646	1	CHI3L1	1	203151921	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	34889540	203151921	46098700	5	55053										
CR1	0	genome.wustl.edu	37	chr1	207697209	207697209	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ccaaatgtggaaaatggaatAttggtatctgacaacagaag	10	5	1	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	1	207697209	207697209	A	G	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.741	p.I247M	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	93	0	0	81	16	16.49	-	-	-	G	207697209	A	G	207697209	3	3	639	1	0	0	0	0	1	0	0	0	3870	439	16	5	759	5	CR1	1	207697209	Missense_Mutation	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09	4545288	207697209	41553412	6	55054										
COL8A1	0	genome.wustl.edu	37	chr3	99513747	99513747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ggatttccaggtggcaaaggGgagcaaggactgccagggct	17	8	0	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	3	99513747	99513747	G	A	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	silent	c.1002	p.G334	0.994	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	38	0	0	27	7	20.59	-	-	-	A	99513747	G	A	99513747	2	1	639	1	0	0	0	0	0	0	0	1	3735	1219	43	4		4	COL8A1	3	99513747	Silent	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		99513747	98508683	7	55055										
HTT	0	genome.wustl.edu	37	chr4	3190715	3190715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ttggtattcttttagaagacAttgttacaaaacagctgaag	8	5	1	3			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	4	3190715	3190715	A	G	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.5263	p.I1755V	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	252	0	0	226	57	20	-	-	-	G	3190715	A	G	3190715	3	3	639	1	0	0	0	0	1	0	0	0	7511	217	8	5	5421	5	HTT	4	3190715	Missense_Mutation	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09		3190715	187963561	8	55056										
CPEB2	0	genome.wustl.edu	37	chr4	15060048	15060048	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tttaatggttattccaggctAtgcatttcttctctttcaag	6	8	3	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	4	15060048	15060048	A	G	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	missense	c.2465	p.Y822C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	218	0	0	268	30	10.03	-	-	-	G	15060048	A	G	15060048	3	3	639	1	0	0	0	0	1	0	0	0	3831	449	16	5	2508	5	CPEB2	4	15060048	Missense_Mutation	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09	11869333	15060048	176094228	9	55057										
MTTP	0	genome.wustl.edu	37	chr4	100530060	100530060	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aacatcctgctgtctattggGgagcttccccaagaaatgaa	9	10	1	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	4	100530060	100530060	G	T	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	silent	c.1695	p.G565	0.995	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	106	0	0	122	18	12.86	-	-	-	T	100530060	G	T	100530060	2	4	639	1	0	0	0	0	0	0	0	1	10036	1219	43	4		4	MTTP	4	100530060	Silent	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	85470012	100530060	90624216	10	55058										
TIFA	0	genome.wustl.edu	37	chr4	113199046	113199046	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	cattttcatccatttctgtcGgagaactgctttgggaggag	11	8	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	4	113199046	113199046	G	C	SNP	TIFA	ENST00000361717	human	ensembl	69_37n	-1	known	missense	c.527	p.P176R	0.869	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,pfscan_FHA_dom	-	no_errors	TIFA	HGNC	ENSG00000145365	198	0	0	154	25	13.97	-	-	-	C	113199046	G	C	113199046	3	2	639	1	0	0	0	0	1	0	0	0	15989	1116	39	3	31	3	TIFA	4	113199046	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	12668986	113199046	77955230	11	55059										
ARSJ	0	genome.wustl.edu	37	chr4	114823652	114823652	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	accggcactgcagttttgttGaactgtgagagcctccgtag	12	10	0	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	4	114823652	114823652	G	A	SNP	ARSJ	ENST00000315366	human	ensembl	69_37n	-1	known	silent	c.1578	p.F526	1.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801	155	0	0	125	18	12.59	-	-	-	A	114823652	G	A	114823652	2	1	639	1	0	0	0	0	0	0	0	1	999	1281	45	2		2	ARSJ	4	114823652	Silent	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	1624606	114823652	76330624	12	55060										
RGMB	0	genome.wustl.edu	37	chr5	98129189	98129190	+	Frame_Shift_Del	DEL	AC	AC	-													0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ggtgcaggcctggcctggctAcacactggagactgccaaca							TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	5	98129189	98129190	AC	-	DEL	RGMB	ENST00000308234	human	ensembl	69_37n	1	known	frame_shift_del	c.1169_1170	p.L392fs	1.000:1.000	pfam_RGM_C	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136	85	0	0	53	18	24.66	-	-	-	-	98129190	AC	-	98129189	7	5	639	1	0	1	0	1	0	0	0	0	13364	391	14	0	1183	0	RGMB	5	98129189	Frame_Shift_Del	DEL	AC	TCGA-C8-A132-01A-31D-A10Y-09		98129189	82786071	13	55061										
MCC	0	genome.wustl.edu	37	chr5	112420867	112420867	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ccccaggaactcaccttggcGatgggaatgtcattgctgct	11	12	2	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	5	112420867	112420867	G	C	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	missense	c.969	p.I323M	0.518	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	188	0	0	168	39	18.84	-	-	-	C	112420867	G	C	112420867	3	2	639	1	0	0	0	0	1	0	0	0	9444	1048	37	3	1564	3	MCC	5	112420867	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	14291678	112420867	68494393	14	55062										
PCDHB5	0	genome.wustl.edu	37	chr5	140517348	140517348	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ctaaccttttgccccagggcGctggtgaagaaatagggaaa	12	9	0	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	5	140517348	140517348	G	C	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	missense	c.2332	p.A778P	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	134	0	0	93	13	12.26	-	-	-	C	140517348	G	C	140517348	3	2	639	1	0	0	0	0	1	0	0	0	11618	1087	38	3	2334	3	PCDHB5	5	140517348	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	28096481	140517348	40397912	15	55063										
ENPP3	0	genome.wustl.edu	37	chr6	132014640	132014640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	atttacttgcttttcagtgcCgaaaacctgatcagcatttc	6	10	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	6	132014640	132014640	C	G	SNP	ENPP3	ENST00000357639	human	ensembl	69_37n	1	known	missense	c.1288	p.R430G	0.916	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	188	0	0	197	43	17.84	-	-	-	G	132014640	C	G	132014640	3	3	639	1	0	0	0	0	1	0	0	0	5168	644	23	3	1346	3	ENPP3	6	132014640	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		132014640	39100427	16	55064										
GARS	0	genome.wustl.edu	37	chr7	30649281	30649281	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	cccattactggaaatgatctAtcccctccagtgtcttttaa	5	12	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	7	30649281	30649281	A	G	SNP	GARS	ENST00000389266	human	ensembl	69_37n	1	known	silent	c.816	p.L272	0.370	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105	150	0	0	123	45	26.63	-	-	-	G	30649281	A	G	30649281	2	3	639	1	0	0	0	0	0	0	0	1	6292	436	16	5		5	GARS	7	30649281	Silent	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09		30649281	128489382	17	55065										
PPP1R3A	0	genome.wustl.edu	37	chr7	113518116	113518116	+	Frame_Shift_Del	DEL	T	T	-													0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aggtttgttgattaaaatcaTtggccctagagatttttcca							TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	7	113518116	113518116	T	-	DEL	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	frame_shift_del	c.3031	p.M1011fs	0.002	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	221	0	0	206	28	11.86	-	-	-	-	113518116	T	-	113518116	7	5	639	1	0	1	0	1	0	0	0	0	12448	1493	52	0	341	0	PPP1R3A	7	113518116	Frame_Shift_Del	DEL	T	TCGA-C8-A132-01A-31D-A10Y-09	82868835	113518116	45620547	18	55066										
SLC39A14	0	genome.wustl.edu	37	chr8	22277089	22277089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ctgagatgaatgaggtctgtCaagaggatgaaaggaagggc	16	4	2	5			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	8	22277089	22277089	C	G	SNP	SLC39A14	ENST00000359741	human	ensembl	69_37n	1	known	missense	c.1357	p.Q453E	0.736	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635	170	0	0	121	27	18.24	-	-	-	G	22277089	C	G	22277089	3	3	639	1	0	0	0	0	1	0	0	0	14706	827	29	2	1561	2	SLC39A14	8	22277089	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		22277089	124086933	19	55067										
CDH17	0	genome.wustl.edu	37	chr8	95172379	95172379	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tttgtgtcttcagcaagagtCaggtttccatactaaggaga	10	7	3	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	8	95172379	95172379	C	G	SNP	CDH17	ENST00000520952	human	ensembl	69_37n	-1	known	missense	c.55	p.D19H	0.976	superfamily_Cadherin-like,pfscan_Cadherin	superfamily_Cadherin-like,pfscan_Cadherin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDH17	HGNC	ENSG00000079112	197	0	0	175	56	24.24	-	-	-	G	95172379	C	G	95172379	3	3	639	1	0	0	0	0	1	0	0	0	3131	813	29	2	1155	2	CDH17	8	95172379	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	72895290	95172379	51191643	20	55068										
IARS	0	genome.wustl.edu	37	chr9	95003139	95003139	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tcatggaatttactcttaccTtgttcactgccatttgcaca	5	11	3	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	9	95003139	95003139	T	A	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.3282	p.Q1094H	1.000	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	131	0	0	147	29	16.48	-	-	-	A	95003139	T	A	95003139	3	1	639	1	0	0	0	0	1	0	0	0	7527	1623	56	5	526	5	IARS	9	95003139	Missense_Mutation	SNP	T	TCGA-C8-A132-01A-31D-A10Y-09		95003139	46210292	21	55069										
IKBKAP	0	genome.wustl.edu	37	chr9	111659236	111659236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tgtgagcggatctctaccttGaagctcgtgtactttttgca	10	9	1	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	9	111659236	111659236	G	C	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.2584	p.Q862E	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	177	0	0	119	60	33.52	-	-	-	C	111659236	G	C	111659236	3	2	639	1	0	0	0	0	1	0	0	0	7664	1299	45	2	1470	2	IKBKAP	9	111659236	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	16656097	111659236	29554195	22	55070										
SORBS1	0	genome.wustl.edu	37	chr10	97157022	97157022	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aaacatagtcttgtaccagtCttttgatctctcagtgttct	6	9	5	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	10	97157022	97157022	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.1177	p.D393N	1.000	pfam_Sorb,smart_Sorb,pfscan_Sorb	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	211	0	0	155	53	25.24	-	-	-	T	97157022	C	T	97157022	3	4	639	1	0	0	0	0	1	0	0	0	15016	913	32	2	2982	2	SORBS1	10	97157022	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		97157022	38377725	23	55071										
DNTT	0	genome.wustl.edu	37	chr10	98078170	98078170	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	cggatgttctggagtggcttCaagcacagaaagtacaagtc	12	8	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	10	98078170	98078170	C	G	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.265	p.Q89E	0.401	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	121	0	0	94	20	17.54	-	-	-	G	98078170	C	G	98078170	3	3	639	1	0	0	0	0	1	0	0	0	4715	827	29	2	271	2	DNTT	10	98078170	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	921148	98078170	37456577	24	55072										
LRRK2	0	genome.wustl.edu	37	chr12	40687422	40687422	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	attttaccgagatgccgtatTacagcgttgctcaccaaatt	7	10	1	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	12	40687422	40687422	T	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	nonsense	c.2765	p.L922*	0.605	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	120	0	0	110	20	15.38	-	-	-	A	40687422	T	A	40687422	4	1	639	1	0	0	0	0	0	1	0	0	9099	1764	61	5	2847	5	LRRK2	12	40687422	Nonsense_Mutation	SNP	T	TCGA-C8-A132-01A-31D-A10Y-09		40687422	93164473	25	55073										
ATP11A	0	genome.wustl.edu	37	chr13	113485824	113485824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tcctcccagagtcgtcaggaAtcgacatgattgactcgtcc	9	13	1	3			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	13	113485824	113485824	A	G	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.1357	p.I453V	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	78	0	0	40	5	10.87	-	-	-	G	113485824	A	G	113485824	3	3	639	1	0	0	0	0	1	0	0	0	1123	101	4	5	1407	5	ATP11A	13	113485824	Missense_Mutation	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09		113485824	1684054	26	55074										
GAS6	0	genome.wustl.edu	37	chr13	114535690	114535690	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aggtacaaggacttcacactCttggccacgctgaagggcac	11	12	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	13	114535690	114535690	C	G	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	missense	c.999	p.K333N	0.975	superfamily_ConA-like_lec_gl	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	36	0	0	12	7	36.84	-	-	-	G	114535690	C	G	114535690	3	3	639	1	0	0	0	0	1	0	0	0	6299	912	32	2	1194	2	GAS6	13	114535690	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	1049866	114535690	634188	27	55075										
MYH6	0	genome.wustl.edu	37	chr14	23863422	23863422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tggtggccatctccttctccGtctctgcgctcttcagcagc	9	16	5	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	14	23863422	23863422	G	A	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.2540	p.T847M	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	249	0	0	112	47	29.56	-	-	-	A	23863422	G	A	23863422	3	1	639	1	0	0	0	0	1	0	0	0	10110	1145	40	1	3355	1	MYH6	14	23863422	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		23863422	83486118	28	55076										
ZNF710	0	genome.wustl.edu	37	chr15	90611078	90611078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aggcccccagcatggagtccCcggagcctgtcaagccggaa	13	15	1	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	15	90611078	90611078	C	T	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	missense	c.709	p.P237S	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	16	0	0	5	4	44.44	-	-	-	T	90611078	C	T	90611078	3	4	639	1	0	0	0	0	1	0	0	0	18211	623	22	4	711	4	ZNF710	15	90611078	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		90611078	11920314	29	55077										
EARS2	0	genome.wustl.edu	37	chr16	23546520	23546520	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	cgctcttcatgatgactgggTctccctccacgctggccact	9	16	3	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	16	23546520	23546520	T	C	SNP	EARS2	ENST00000341597	human	ensembl	69_37n	-1	known	missense	c.647	p.D216G	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_Ib_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Glu-tRNA-synth_Ib_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356	46	0	0	44	8	15.09	-	-	-	C	23546520	T	C	23546520	3	2	639	1	0	0	0	0	1	0	0	0	4913	1667	58	5	948	5	EARS2	16	23546520	Missense_Mutation	SNP	T	TCGA-C8-A132-01A-31D-A10Y-09		23546520	66808233	30	55078										
PRPF8	0	genome.wustl.edu	37	chr17	1557290	1557290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tgtctcgaatttctgattgtGtcagtgatgccacgttcaca	9	9	4	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	1557290	1557290	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.6008	p.T2003I	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	229	0	0	200	24	10.67	-	-	-	A	1557290	G	A	1557290	3	1	639	1	0	0	0	0	1	0	0	0	12656	1377	48	4	1023	4	PRPF8	17	1557290	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		1557290	79637920	31	55079										
KRT32	0	genome.wustl.edu	37	chr17	39623317	39623317	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ccattgaaggccccttcgctGtaccagctgccggggcccat	11	16	0	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	39623317	39623317	G	A	SNP	KRT32	ENST00000225899	human	ensembl	69_37n	-1	known	silent	c.261	p.Y87	0.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	77	0	0	42	6	12.5	-	-	-	A	39623317	G	A	39623317	2	1	639	1	0	0	0	0	0	0	0	1	8521	1372	48	4		4	KRT32	17	39623317	Silent	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	38066027	39623317	41571893	32	55080										
COL1A1	0	genome.wustl.edu	37	chr17	48263242	48263242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gcagggccttcttgaggttgCcagtctgctggtccatgtag	14	10	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	48263242	48263242	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.4145	p.G1382D	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	112	0	0	202	36	15.06	-	-	-	T	48263242	C	T	48263242	3	4	639	1	0	0	0	0	1	0	0	0	3707	739	26	4	257	4	COL1A1	17	48263242	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	8639925	48263242	32931968	33	55081			1	95		4	4	4002	C		3.957915e-08
COL1A1	0	genome.wustl.edu	37	chr17	48264447	48264447	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gccagggagaccgttgagtcCatctttgccaggagcaccag	13	12	1	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	48264447	48264447	C	G	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.3460	p.G1154R	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	47	0	0	97	27	21.77	-	-	-	G	48264447	C	G	48264447	3	3	639	1	0	0	0	0	1	0	0	0	3707	603	21	4	954	4	COL1A1	17	48264447	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	1205	48264447	32930763	34	55082			1	95		4	4	4002	C		3.957915e-08
COL1A1	0	genome.wustl.edu	37	chr17	48266586	48266586	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ctctgaccaggcaggccgacCacaccacgctgtccagcaat	9	17	1	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	48266586	48266586	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	silent	c.2880	p.V960	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	57	0	0	134	23	14.65	-	-	-	T	48266586	C	T	48266586	2	4	639	1	0	0	0	0	0	0	0	1	3707	581	21	4		4	COL1A1	17	48266586	Silent	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	2139	48266586	32928624	35	55083			1	95		4	4	4002	C		3.957915e-08
COL1A1	0	genome.wustl.edu	37	chr17	48267243	48267243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gggaccagcgctgccgcgagCacctttggctccaggagcac	14	15	0	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	48267243	48267243	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.2590	p.A864T	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	42	0	0	71	15	17.44	-	-	-	T	48267243	C	T	48267243	3	4	639	1	0	0	0	0	1	0	0	0	3707	710	25	4	1864	4	COL1A1	17	48267243	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	657	48267243	32927967	36	55084			1	95		4	4	4002	C		3.957915e-08
BPTF	0	genome.wustl.edu	37	chr17	65914927	65914927	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	atgatatggcggccaaggctCctccaggaggagggactaca	14	10	0	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	65914927	65914927	C	A	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.5779	p.P1927T	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	162	0	0	88	49	35.51	-	-	-	A	65914927	C	A	65914927	3	1	639	1	0	0	0	0	1	0	0	0	1503	855	30	2	5833	2	BPTF	17	65914927	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	17647684	65914927	15280283	37	55085										
QRICH2	0	genome.wustl.edu	37	chr17	74277976	74277976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gcttggccttcttggagggtCgggagacggccaggctgttg	18	9	1	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	17	74277976	74277976	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.3734	p.R1245Q	0.989	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	45	0	0	23	4	14.81	-	-	-	T	74277976	C	T	74277976	3	4	639	1	0	0	0	0	1	0	0	0	12963	884	31	1	1305	1	QRICH2	17	74277976	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	8363049	74277976	6917234	38	55086										
ZNF407	0	genome.wustl.edu	37	chr18	72347051	72347051	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	ttttggtcgatttgactcctCcataataagaataaagaacc	6	8	0	3			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	18	72347051	72347051	C	G	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.4076	p.S1359C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	57	0	0	40	24	37.5	-	-	-	G	72347051	C	G	72347051	3	3	639	1	0	0	0	0	1	0	0	0	17983	855	30	2	4078	2	ZNF407	18	72347051	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		72347051	5730197	39	55087										
PRX	0	genome.wustl.edu	37	chr19	40902578	40902578	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	cacctctggcacagccacctCtgacacctctgggagtttca	8	16	4	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	19	40902578	40902578	C	G	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.1681	p.E561Q	0.232	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	76	0	0	40	11	21.57	-	-	-	G	40902578	C	G	40902578	3	3	639	1	0	0	0	0	1	0	0	0	12722	922	32	2	2708	2	PRX	19	40902578	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		40902578	18226405	40	55088										
ERCC1	0	genome.wustl.edu	37	chr19	45924518	45924518	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tctctcctgccaggggctctGaccctgtggggcacgtggcc	14	15	2	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	19	45924518	45924518	G	C	SNP	ERCC1	ENST00000013807	human	ensembl	69_37n	-1	known	nonsense	c.239	p.S80*	0.004	NULL	pfam_DNA_repair_Rad10,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,tigrfam_DNA_repair_Rad10	-	no_errors	ERCC1	HGNC	ENSG00000012061	112	0	0	69	8	10.39	-	-	-	C	45924518	G	C	45924518	4	2	639	1	0	0	0	0	0	1	0	0	5249	1294	45	2	815	2	ERCC1	19	45924518	Nonsense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09	5021940	45924518	13204465	41	55089										
C20orf26	0	genome.wustl.edu	37	chr20	20269280	20269280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	tcagcttctgtgagaagaatGtggattatgaaacgtttaaa	10	4	2	3			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	20	20269280	20269280	G	T	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.2824	p.V942L	0.997	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	91	0	0	87	16	15.53	-	-	-	T	20269280	G	T	20269280	3	4	639	1	0	0	0	0	1	0	0	0	2126	1377	48	4	2942	4	C20orf26	20	20269280	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		20269280	42756240	42	55090										
SNX21	0	genome.wustl.edu	37	chr20	44463689	44463689	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	aagtcccggaacaccttggcAccccagcggctgctcttcga	10	16	1	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	20	44463689	44463689	A	C	SNP	SNX21	ENST00000491381	human	ensembl	69_37n	1	known	silent	c.381	p.A127	0.936	superfamily_Phox	pfam_Phox,pfam_TPR-1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104	48	0	0	32	6	15.38	-	-	-	C	44463689	A	C	44463689	2	2	639	1	0	0	0	0	0	0	0	1	14982	146	6	5		5	SNX21	20	44463689	Silent	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09	24194409	44463689	18561831	43	55091										
DIDO1	0	genome.wustl.edu	37	chr20	61523338	61523338	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	atttatactataagcaggtaCcttagacacagaagacttga	7	7	0	4			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	20	61523338	61523338	C	G	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	splice_site	c.3345+1	e12+1	1.000	-	-	-	no_errors	DIDO1	HGNC	ENSG00000101191	107	0	0	87	11	11.22	-	-	-	G	61523338	C	G	61523338	5	3	639	1	0	0	0	0	0	0	1	0	4558	521	18	4	3417	4	DIDO1	20	61523338	Splice_Site	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09	17059649	61523338	1502182	44	55092										
BACE2	0	genome.wustl.edu	37	chr21	42617984	42617984	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gtggaagctgtggcccgcgcAtctctggtgagtcctcggga	16	11	1	1			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	21	42617984	42617984	A	G	SNP	BACE2	ENST00000330333	human	ensembl	69_37n	1	known	silent	c.978	p.A326	0.822	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE2	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Peptidase_A1,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240	47	0	0	32	4	11.11	-	-	-	G	42617984	A	G	42617984	2	3	639	1	0	0	0	0	0	0	0	1	1286	204	8	5		5	BACE2	21	42617984	Silent	SNP	A	TCGA-C8-A132-01A-31D-A10Y-09		42617984	5511911	45	55093										
YDJC	0	genome.wustl.edu	37	chr22	21982871	21982871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gacgcgcagctcatgcagccGctcccaagagcaagagaaag	12	13	1	2			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	22	21982871	21982871	G	A	SNP	YDJC	ENST00000292778	human	ensembl	69_37n	-1	known	missense	c.808	p.R270W	0.989	pfam_Uncharacterised_UPF0249/HpnK	pfam_Uncharacterised_UPF0249/HpnK	-	no_errors	YDJC	HGNC	ENSG00000161179	25	0	0	11	5	31.25	-	-	-	A	21982871	G	A	21982871	3	1	639	1	0	0	0	0	1	0	0	0	17568	1086	38	1	167	1	YDJC	22	21982871	Missense_Mutation	SNP	G	TCGA-C8-A132-01A-31D-A10Y-09		21982871	29321695	46	55094										
PLXNB2	0	genome.wustl.edu	37	chr22	50719581	50719583	+	In_Frame_Del	DEL	TCT	TCT	-													0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gccctccagctgggacttgaTcttctcatactctcgttcgg							TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	22	50719581	50719583	TCT	-	DEL	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	in_frame_del	c.3700_3698	p.K1233in_frame_del	1.000:1.000:1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	50	0	0	22	6	21.43	-	-	-	-	50719583	TCT	-	50719581	7	5	639	1	0	1	0	1	0	0	0	0	12198	1435	50	0	1876	0	PLXNB2	22	50719581	In_Frame_Del	DEL	TCT	TCGA-C8-A132-01A-31D-A10Y-09	28736710	50719581	584985	47	55095										
BCORL1	0	genome.wustl.edu	37	chrX	129149801	129149801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0489665159637617	2.23235156615241	3.69082125603865	0.865036231884058	0.0230141375652211	0.244650288465068	6	gctacctcacgacagccaccCcaaggaacttatattggacg	8	14	1	0			TCGA-C8-A132-01A-31D-A10Y-09	TCGA-C8-A132-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c038ab30-af2f-4771-bf82-dcf19f32efab	57984eb7-bce9-4b03-8aa3-014ee4014165	X	129149801	129149801	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.3053	p.P1018L	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	98	0	0	62	8	11.43	-	-	-	T	129149801	C	T	129149801	3	4	639	1	0	0	0	0	1	0	0	0	1391	623	22	4	3063	4	BCORL1	23	129149801	Missense_Mutation	SNP	C	TCGA-C8-A132-01A-31D-A10Y-09		129149801	26120759	48	55096										
APOB	0	genome.wustl.edu	37	chr2	21224835	21224835	+	Frame_Shift_Del	DEL	T	T	-													0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	ctggtggtaatcagaaattaTtttcttcgtcgcaatggcct							TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	2	21224835	21224835	T	-	DEL	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	frame_shift_del	c.13459	p.I4487fs	0.420	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	173	0	0	123	87	41.04	-	-	-	-	21224835	T	-	21224835	7	5	640	1	0	1	0	1	0	0	0	0	787	1493	52	0	236	0	APOB	2	21224835	Frame_Shift_Del	DEL	T	TCGA-C8-A133-01A-32D-A12B-09		21224835	221974538	1	55097										
MBD4	0	genome.wustl.edu	37	chr3	129152964	129152964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	tccttctttctatctgtgttCgtgggatggtatcttctgaa	9	8	5	1			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	3	129152964	129152964	C	T	SNP	MBD4	ENST00000249910	human	ensembl	69_37n	-1	known	missense	c.1217	p.R406Q	1.000	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_integrase-typ,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071	588	1	0.17	295	236	44.44	-	-	-	T	129152964	C	T	129152964	3	4	640	1	0	0	0	0	1	0	0	0	9417	884	31	1	545	1	MBD4	3	129152964	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09		129152964	68869466	2	55098										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	207	1	0.48	134	95	41.48	-	-	-	A	178936091	G	A	178936091	3	1	640	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-C8-A133-01A-32D-A12B-09	49783127	178936091	19086339	3	55099										
FBXL5	0	genome.wustl.edu	37	chr4	15627295	15627295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	catctaacatccacacataaGgagaagtgaaattctcagaa	6	9	2	3			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	4	15627295	15627295	G	T	SNP	FBXL5	ENST00000341285	human	ensembl	69_37n	-1	known	missense	c.1430	p.P477H	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL5	HGNC	ENSG00000118564	424	1	0.23	209	193	47.77	-	-	-	T	15627295	G	T	15627295	3	4	640	1	0	0	0	0	1	0	0	0	5768	1000	35	4	657	4	FBXL5	4	15627295	Missense_Mutation	SNP	G	TCGA-C8-A133-01A-32D-A12B-09		15627295	175526981	4	55100										
RREB1	0	genome.wustl.edu	37	chr6	7189439	7189439	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	cactcatgcagcatctgcggAaagtcactgagctcggccag	11	13	3	1			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	7189439	7189439	A	G	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	silent	c.309	p.G103	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	72	0	0	22	30	57.69	-	-	-	G	7189439	A	G	7189439	2	3	640	1	0	0	0	0	0	0	0	1	13765	233	9	5		5	RREB1	6	7189439	Silent	SNP	A	TCGA-C8-A133-01A-32D-A12B-09		7189439	163925628	5	55101										
MYB	0	genome.wustl.edu	37	chr6	135511361	135511361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	aacaatgtagggagaggtggCataaccacttgaatccagaa	11	7	0	3			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	135511361	135511361	C	T	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	missense	c.403	p.H135Y	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	275	0	0	159	108	40.3	-	-	-	T	135511361	C	T	135511361	3	4	640	1	0	0	0	0	1	0	0	0	10079	710	25	4	421	4	MYB	6	135511361	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09	128321922	135511361	35603706	6	55102										
RMND1	0	genome.wustl.edu	37	chr6	151743699	151743699	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	aggaattgactgaatagattCaataaatttatccagtgatg	8	4	1	4			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	151743699	151743699	C	A	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	nonsense	c.979	p.E327*	1.000	pfam_DUF155	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	110	0	0	92	30	24.59	-	-	-	A	151743699	C	A	151743699	4	1	640	1	0	0	0	0	0	1	0	0	13482	835	29	2	390	2	RMND1	6	151743699	Nonsense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09	16232338	151743699	19371368	7	55103										
PRSS37	0	genome.wustl.edu	37	chr7	141537798	141537798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	cttgatgagcatgaggtcatCctgtggggcgctatgactgt	14	8	1	4			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	7	141537798	141537798	C	A	SNP	PRSS37	ENST00000350549	human	ensembl	69_37n	-1	known	missense	c.292	p.D98Y	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS37	HGNC	ENSG00000165076	409	0	0	195	157	44.6	-	-	-	A	141537798	C	A	141537798	3	1	640	1	0	0	0	0	1	0	0	0	12706	855	30	2	427	2	PRSS37	7	141537798	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09		141537798	17600865	8	55104										
TEAD4	0	genome.wustl.edu	37	chr12	3104024	3104024	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	ctctgggggcagtcaggcacTggacaagcccatcgacaatg	13	12	2	0			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	3104024	3104024	T	G	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	1	known	missense	c.92	p.L31R	0.996	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	59	0	0	18	20	52.63	-	-	-	G	3104024	T	G	3104024	3	3	640	1	0	0	0	0	1	0	0	0	15836	1580	55	5	94	5	TEAD4	12	3104024	Missense_Mutation	SNP	T	TCGA-C8-A133-01A-32D-A12B-09		3104024	130747871	9	55105										
CNTN1	0	genome.wustl.edu	37	chr12	41316230	41316230	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	aagcaaccctgagctttggaTgtaagtaaactgtaactttt	8	7	0	1			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	41316230	41316230	T	A	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.400	p.Y134N	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	238	0	0	125	105	45.65	-	-	-	A	41316230	T	A	41316230	3	1	640	1	0	0	0	0	1	0	0	0	3670	1478	51	5	414	5	CNTN1	12	41316230	Missense_Mutation	SNP	T	TCGA-C8-A133-01A-32D-A12B-09	38212206	41316230	92535665	10	55106										
RIMBP2	0	genome.wustl.edu	37	chr12	130912757	130912757	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	tgggacgtgccgctgggccgCctccttcccccatcttccag	11	18	1	0			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	130912757	130912757	C	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.2328	p.R776S	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	82	0	0	39	21	35	-	-	-	A	130912757	C	A	130912757	3	1	640	1	0	0	0	0	1	0	0	0	13447	738	26	4	862	4	RIMBP2	12	130912757	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09	89596527	130912757	2939138	11	55107										
CKAP2	0	genome.wustl.edu	37	chr13	53048072	53048072	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	actggaaatggagagtaaacTtcatagaaatttgctatttc	8	5	1	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	13	53048072	53048072	T	G	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	missense	c.1658	p.L553R	0.000	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	263	0	0	154	119	43.43	-	-	-	G	53048072	T	G	53048072	3	3	640	1	0	0	0	0	1	0	0	0	3472	1609	56	5	1688	5	CKAP2	13	53048072	Missense_Mutation	SNP	T	TCGA-C8-A133-01A-32D-A12B-09		53048072	62121806	12	55108										
SULT1A2	0	genome.wustl.edu	37	chr16	28603690	28603690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	ttgaacgacgtgtgctcaacCatgaggtccacagtctcctc	9	13	2	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	16	28603690	28603690	C	T	SNP	SULT1A2	ENST00000335715	human	ensembl	69_37n	-1	known	missense	c.669	p.M223I	0.002	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1A2	HGNC	ENSG00000197165	644	0	0	268	227	45.86	-	-	-	T	28603690	C	T	28603690	3	4	640	1	0	0	0	0	1	0	0	0	15464	594	21	4	226	4	SULT1A2	16	28603690	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09		28603690	61751063	13	55109										
PSMB6	0	genome.wustl.edu	37	chr17	4700075	4700075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	cgtggttctgggggcggactCcagaacaaccactgggtgag	16	10	1	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	4700075	4700075	C	T	SNP	PSMB6	ENST00000270586	human	ensembl	69_37n	1	known	missense	c.155	p.S52F	1.000	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB6	HGNC	ENSG00000142507	236	0	0	101	74	42.05	-	-	-	T	4700075	C	T	4700075	3	4	640	1	0	0	0	0	1	0	0	0	12761	855	30	2	161	2	PSMB6	17	4700075	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09		4700075	76495135	14	55110										
NCOR1	0	genome.wustl.edu	37	chr17	15965146	15965146	+	Missense_Mutation	SNP	G	G	T													0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	gagcagccagggcatccgcaGcagtgttgtaacgggaggct							TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	15965146	15965146	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5450	p.A1817D	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	40	0	0	19	32	62.75	-	-	-	T	15965146	G	T	15965146	3	4	640	1	0	0	0	0	1	0	0	0	10307	971	34	4	1912	4	NCOR1	17	15965146	Missense_Mutation	SNP	G	TCGA-C8-A133-01A-32D-A12B-09	11265071	15965146	65230064	15	55111	433	2								
NCOR1	0	genome.wustl.edu	37	chr17	15965147	15965147	+	Missense_Mutation	SNP	C	C	T													0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	agcagccagggcatccgcagCagtgttgtaacgggaggctg							TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	15965147	15965147	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5449	p.A1817T	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	40	0	0	19	31	60.78	-	-	-	T	15965147	C	T	15965147	3	4	640	1	0	0	0	0	1	0	0	0	10307	710	25	4	1913	4	NCOR1	17	15965147	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09	1	15965147	65230063	16	55112	433	2								
SREBF1	0	genome.wustl.edu	37	chr17	17716752	17716752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	tggtgtgtccgtgtggggctGgcccccgccatcagccgggc	17	14	1	0			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	17716752	17716752	G	T	SNP	SREBF1	ENST00000578469	human	ensembl	69_37n	-1	known	missense	c.5	p.P2Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SREBF1	HGNC	ENSG00000072310	22	0	0	8	8	50	-	-	-	T	17716752	G	T	17716752	3	4	640	1	0	0	0	0	1	0	0	0	15232	1335	47	4	307	4	SREBF1	17	17716752	Missense_Mutation	SNP	G	TCGA-C8-A133-01A-32D-A12B-09	1751605	17716752	63478458	17	55113										
PDE4C	0	genome.wustl.edu	37	chr19	18333013	18333013	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	tagtcgctatctgagcggtaCaggaaggactcgcgccgctg	14	11	1	1			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	19	18333013	18333013	C	G	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	silent	c.363	p.L121	0.998	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	95	0	0	34	25	42.37	-	-	-	G	18333013	C	G	18333013	2	3	640	1	0	0	0	0	0	0	0	1	11714	465	17	4		4	PDE4C	19	18333013	Silent	SNP	C	TCGA-C8-A133-01A-32D-A12B-09		18333013	40795970	18	55114										
DMWD	0	genome.wustl.edu	37	chr19	46294321	46294321	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	gcccttgtagatccgcttgtCaattggcttgttgaggtcaa	11	9	2	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	19	46294321	46294321	C	T	SNP	DMWD	ENST00000270223	human	ensembl	69_37n	-1	known	missense	c.466	p.D156N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800	570	2	0.35	255	122	32.28	-	-	-	T	46294321	C	T	46294321	3	4	640	1	0	0	0	0	1	0	0	0	4629	826	29	2	1574	2	DMWD	19	46294321	Missense_Mutation	SNP	C	TCGA-C8-A133-01A-32D-A12B-09	27961308	46294321	12834662	19	55115										
TRPC4AP	0	genome.wustl.edu	37	chr20	33591392	33591392	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	ggccagcatcaggatcaccaGgctggtgttgaggcagctga	15	10	2	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	20	33591392	33591392	G	A	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	silent	c.2077	p.L693	1.000	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	52	0	0	22	17	43.59	-	-	-	A	33591392	G	A	33591392	2	1	640	1	0	0	0	0	0	0	0	1	16677	991	35	4		4	TRPC4AP	20	33591392	Silent	SNP	G	TCGA-C8-A133-01A-32D-A12B-09		33591392	29434128	20	55116										
ASCC2	0	genome.wustl.edu	37	chr22	30189408	30189408	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	gcgcccacctggttgccatcGtatgtgtcatcgtactcatc	9	14	2	0			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	22	30189408	30189408	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.1860	p.Y620	0.986	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	88	0	0	56	9	13.85	-	-	-	A	30189408	G	A	30189408	2	1	640	1	0	0	0	0	0	0	0	1	1036	1140	40	1		1	ASCC2	22	30189408	Silent	SNP	G	TCGA-C8-A133-01A-32D-A12B-09		30189408	21115158	21	55117										
AFF2	0	genome.wustl.edu	37	chrX	148037578	148037578	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0952380952380952	2	0.80835493989321	1.35353535353535	0	1.52272727272727	0.428571428571429	1	0	ggagcttcatgacccaccaaGaggccgcaacaaagccactg	10	14	1	2			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	X	148037578	148037578	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.2003	p.R668I	0.997	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	151	1	0.65	79	59	42.75	-	-	-	T	148037578	G	T	148037578	3	4	640	1	0	0	0	0	1	0	0	0	357	942	33	2	2100	2	AFF2	23	148037578	Missense_Mutation	SNP	G	TCGA-C8-A133-01A-32D-A12B-09		148037578	7232982	22	55118										
ACTRT2	0	genome.wustl.edu	37	chr1	2939179	2939179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gggcactaccctgttccacgGgctggatgaccggcttctca	12	14	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	2939179	2939179	G	T	SNP	ACTRT2	ENST00000378404	human	ensembl	69_37n	1	known	missense	c.929	p.G310V	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT2	HGNC	ENSG00000169717	36	0	0	27	12	30	-	-	-	T	2939179	G	T	2939179	3	4	641	1	0	0	0	0	1	0	0	0	219	1232	43	4	931	4	ACTRT2	1	2939179	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		2939179	246311442	1	55119										
SPAG17	0	genome.wustl.edu	37	chr1	118582015	118582015	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tccttagggtcatttaaatgAatcataaaattgtggttgtc	8	5	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	118582015	118582015	A	C	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.3219	p.I1073M	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	200	0	0	263	112	29.87	-	-	-	C	118582015	A	C	118582015	3	2	641	1	0	0	0	0	1	0	0	0	15070	242	9	5	3556	5	SPAG17	1	118582015	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	115642836	118582015	130668606	2	55120										
ANKRD34A	0	genome.wustl.edu	37	chr1	145474686	145474686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ggcgccttcgttgcctgcccCtccttatgccggggcgccag	13	17	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	145474686	145474686	C	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	1	known	missense	c.1358	p.P453L	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	13	0	0	31	14	31.11	-	-	-	T	145474686	C	T	145474686	3	4	641	1	0	0	0	0	1	0	0	0	661	681	24	4	1360	4	ANKRD34A	1	145474686	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	26892671	145474686	103775935	3	55121										
FLG	0	genome.wustl.edu	37	chr1	152284334	152284334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tccaccagaggaagtctctgCgtgaggagttcctgattgtc	12	10	1	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	152284334	152284334	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.3028	p.A1010P	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	408	0	0	611	74	10.79	-	-	-	G	152284334	C	G	152284334	3	3	641	1	0	0	0	0	1	0	0	0	5968	768	27	3	9161	3	FLG	1	152284334	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	6809648	152284334	96966287	4	55122										
UBE2Q1	0	genome.wustl.edu	37	chr1	154525280	154525280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gccggtcagtggcctgcaccGagccagacactgcaccctgt	12	16	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	154525280	154525280	G	A	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	missense	c.746	p.S249L	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	72	0	0	85	45	34.62	-	-	-	A	154525280	G	A	154525280	3	1	641	1	0	0	0	0	1	0	0	0	16966	1059	37	1	554	1	UBE2Q1	1	154525280	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	2240946	154525280	94725341	5	55123										
SMG5	0	genome.wustl.edu	37	chr1	156236362	156236362	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	actctggaatgccgggacggGattctcgccctcttccagct	11	14	3	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	156236362	156236362	G	C	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	missense	c.1225	p.P409A	0.244	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	217	0	0	277	122	30.42	-	-	-	C	156236362	G	C	156236362	3	2	641	1	0	0	0	0	1	0	0	0	14885	1174	41	2	1873	2	SMG5	1	156236362	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	1711082	156236362	93014259	6	55124										
ADCY10	0	genome.wustl.edu	37	chr1	167823634	167823634	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tttgtcttttcctcagactcCgtttgttggaaaacgagtac	8	9	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	167823634	167823634	C	G	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	silent	c.2265	p.T755	0.000	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	187	0	0	196	114	36.66	-	-	-	G	167823634	C	G	167823634	2	3	641	1	0	0	0	0	0	0	0	1	293	639	23	3		3	ADCY10	1	167823634	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	11587272	167823634	81426987	7	55125										
HMCN1	0	genome.wustl.edu	37	chr1	186115046	186115046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgaccaggtgcaatgtacaaGcatgtccaggtaagcaacta	10	9	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	186115046	186115046	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.14599	p.A4867S	0.999	pfam_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	36	0	0	98	31	24.03	-	-	-	T	186115046	G	T	186115046	3	4	641	1	0	0	0	0	1	0	0	0	7271	971	34	4	14969	4	HMCN1	1	186115046	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	18291412	186115046	63135575	8	55126										
CACNA1S	0	genome.wustl.edu	37	chr1	201044743	201044743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccagtcttcccctgtcagtaCctgtatggagggaggataga	12	10	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	201044743	201044743	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.1828	p.V610I	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	84	0	0	229	54	19.08	-	-	-	T	201044743	C	T	201044743	3	4	641	1	0	0	0	0	1	0	0	0	2572	521	18	4	3921	4	CACNA1S	1	201044743	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	14929697	201044743	48205878	9	55127										
ZC3H11A	0	genome.wustl.edu	37	chr1	203787708	203787708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttgtttacagggtgacagctGcccattccgtcactgtgaag	11	10	1	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	203787708	203787708	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.65	p.C22Y	1.000	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	133	0	0	310	86	21.61	-	-	-	A	203787708	G	A	203787708	3	1	641	1	0	0	0	0	1	0	0	0	17656	1319	46	4	71	4	ZC3H11A	1	203787708	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	2742965	203787708	45462913	10	55128										
CNTN2	0	genome.wustl.edu	37	chr1	205042352	205042352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tccctgcagaagtccacatcGtgaggaatggaggtgctgct	13	10	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	205042352	205042352	G	C	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.3001	p.V1001L	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	49	0	0	57	23	28.4	-	-	-	C	205042352	G	C	205042352	3	2	641	1	0	0	0	0	1	0	0	0	3671	1145	40	3	3083	3	CNTN2	1	205042352	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	1254644	205042352	44208269	11	55129										
INTS7	0	genome.wustl.edu	37	chr1	212180058	212180058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttgaatagcaagtctctttaCtgccttcctgggatcattct	7	10	3	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	212180058	212180058	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.802	p.V268I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	261	0	0	247	70	22.01	-	-	-	T	212180058	C	T	212180058	3	4	641	1	0	0	0	0	1	0	0	0	7837	565	20	4	2142	4	INTS7	1	212180058	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	7137706	212180058	37070563	12	55130										
USH2A	0	genome.wustl.edu	37	chr1	216348807	216348807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gattcctttaaccagaggtgGcctcagttgtgctggtgcta	12	9	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	216348807	216348807	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.4414	p.P1472T	0.019	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	193	0	0	187	101	35.07	-	-	-	T	216348807	G	T	216348807	3	4	641	1	0	0	0	0	1	0	0	0	17133	1203	42	4	11416	4	USH2A	1	216348807	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	4168749	216348807	32901814	13	55131										
AGT	0	genome.wustl.edu	37	chr1	230846038	230846038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ggccactagcaggccctgtaCagcctgcagggcagacagga	14	13	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	1	230846038	230846038	C	A	SNP	AGT	ENST00000366667	human	ensembl	69_37n	-1	known	missense	c.559	p.V187L	0.164	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Angiotensngn	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Angiotensngn	-	no_errors	AGT	HGNC	ENSG00000135744	27	0	0	30	6	16.67	-	-	-	A	230846038	C	A	230846038	3	1	641	1	0	0	0	0	1	0	0	0	399	478	17	4	914	4	AGT	1	230846038	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	14497231	230846038	18404583	14	55132										
ODC1	0	genome.wustl.edu	37	chr2	10584253	10584253	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgtgctctggcaactttcatCaactcaacttcactatcaaa	4	12	6	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	10584253	10584253	C	T	SNP	ODC1	ENST00000234111	human	ensembl	69_37n	-1	known	silent	c.417	p.L139	1.000	pfam_De-COase2_N,prints_Orn_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ODC1	HGNC	ENSG00000115758	163	0	0	172	80	31.75	-	-	-	T	10584253	C	T	10584253	2	4	641	1	0	0	0	0	0	0	0	1	10898	825	29	2		2	ODC1	2	10584253	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		10584253	232615120	15	55133										
SULT6B1	0	genome.wustl.edu	37	chr2	37402347	37402347	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttgttccaattgattgcaaaAtcaaaataccttccccaaga	4	10	1	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	37402347	37402347	A	G	SNP	SULT6B1	ENST00000535679	human	ensembl	69_37n	-1	known	silent	c.552	p.D184	0.991	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT6B1	HGNC	ENSG00000138068	54	0	0	173	37	17.54	-	-	-	G	37402347	A	G	37402347	2	3	641	1	0	0	0	0	0	0	0	1	15475	98	4	5		5	SULT6B1	2	37402347	Silent	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	26818094	37402347	205797026	16	55134										
RTKN	0	genome.wustl.edu	37	chr2	74659725	74659725	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgctctcgctgggagcaggcTgccagcagcttacaggcccc	13	15	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	74659725	74659725	T	C	SNP	RTKN	ENST00000272430	human	ensembl	69_37n	-1	known	silent	c.180	p.A60	0.385	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	34	0	0	36	31	45.59	-	-	-	C	74659725	T	C	74659725	2	2	641	1	0	0	0	0	0	0	0	1	13808	1567	55	5		5	RTKN	2	74659725	Silent	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	37257378	74659725	168539648	17	55135										
PLEKHB2	0	genome.wustl.edu	37	chr2	132110630	132110630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tcccaaaatacacaccaccaCgagtgcaaaaacccaggcgg	7	15	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	132110630	132110630	C	T	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	1	known	missense	c.461	p.T154M	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	158	0	0	169	78	31.58	-	-	-	T	132110630	C	T	132110630	3	4	641	1	0	0	0	0	1	0	0	0	12139	551	19	1		1	PLEKHB2	2	132110630	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	57450905	132110630	111088743	18	55136										
MSTN	0	genome.wustl.edu	37	chr2	190924922	190924922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cactgtcttcacatcaatgcTctgccaaataccagtgcctg	6	14	4	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	190924922	190924922	T	G	SNP	MSTN	ENST00000260950	human	ensembl	69_37n	-1	known	missense	c.613	p.S205R	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	MSTN	HGNC	ENSG00000138379	245	0	0	264	133	33.33	-	-	-	G	190924922	T	G	190924922	3	3	641	1	0	0	0	0	1	0	0	0	9965	1551	54	5	522	5	MSTN	2	190924922	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	58814292	190924922	52274451	19	55137										
FARP2	0	genome.wustl.edu	37	chr2	242380741	242380741	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	catctcattccccgagggatTgaggactcctgcctccccat	8	16	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	2	242380741	242380741	T	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	nonsense	c.1181	p.L394*	0.966	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	89	0	0	75	47	38.52	-	-	-	A	242380741	T	A	242380741	4	1	641	1	0	0	0	0	0	1	0	0	5723	1821	63	5	1227	5	FARP2	2	242380741	Nonsense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	51455819	242380741	818632	20	55138										
TSEN2	0	genome.wustl.edu	37	chr3	12531408	12531408	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	accatggtcctctgaaagaaTtcaagatattccgtgctgaa	8	9	2	4			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	12531408	12531408	T	C	SNP	TSEN2	ENST00000284995	human	ensembl	69_37n	1	known	missense	c.109	p.F37L	0.186	pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743	114	0	0	142	75	34.4	-	-	-	C	12531408	T	C	12531408	3	2	641	1	0	0	0	0	1	0	0	0	16708	1493	52	5	111	5	TSEN2	3	12531408	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09		12531408	185491022	21	55139										
HACL1	0	genome.wustl.edu	37	chr3	15613244	15613244	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cacttgctctctggaggataCtgccatggtgttttatcaag	10	9	2	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	15613244	15613244	C	T	SNP	HACL1	ENST00000321169	human	ensembl	69_37n	-1	known	silent	c.1026	p.Q342	1.000	NULL	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_Thiamin_PyroP_enz_cen_dom,pfam_TPP_enzyme-bd_C,pfam_CO_DH_CoA_synth	-	no_errors	HACL1	HGNC	ENSG00000131373	146	0	0	158	100	38.76	-	-	-	T	15613244	C	T	15613244	2	4	641	1	0	0	0	0	0	0	0	1	6992	564	20	4		4	HACL1	3	15613244	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	3081836	15613244	182409186	22	55140										
OR5H2	0	genome.wustl.edu	37	chr3	98002196	98002196	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ctgttagccttctcatttttAggtggcttcctccatgcctt	7	12	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	98002196	98002196	A	C	SNP	OR5H2	ENST00000355273	human	ensembl	69_37n	1	known	missense	c.465	p.L155F	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938	143	0	0	167	68	28.94	-	-	-	C	98002196	A	C	98002196	3	2	641	1	0	0	0	0	1	0	0	0	11235	417	15	5	467	5	OR5H2	3	98002196	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	82388952	98002196	100020234	23	55141										
TAGLN3	0	genome.wustl.edu	37	chr3	111730662	111730662	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atggctttaggcagcgttgcAgtcaccaaggatgatggctg	14	8	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	111730662	111730662	A	C	SNP	TAGLN3	ENST00000273368	human	ensembl	69_37n	1	known	silent	c.408	p.A136	0.989	superfamily_CH-domain,pfscan_CH-domain,prints_SM22_calponin,prints_Transgelin	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Transgelin	-	no_errors	TAGLN3	HGNC	ENSG00000144834	128	1	0.78	178	67	27.24	-	-	-	C	111730662	A	C	111730662	2	2	641	1	0	0	0	0	0	0	0	1	15632	175	7	5		5	TAGLN3	3	111730662	Silent	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	13728466	111730662	86291768	24	55142										
PARP14	0	genome.wustl.edu	37	chr3	122414437	122414437	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttgaaaatccctataatggaGggggaagagttgccaatgtt	12	5	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	122414437	122414437	G	C	SNP	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	missense	c.763	p.G255R	1.000	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	60	0	0	80	14	14.89	-	-	-	C	122414437	G	C	122414437	3	2	641	1	0	0	0	0	1	0	0	0	11531	1000	35	4	781	4	PARP14	3	122414437	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	10683775	122414437	75607993	25	55143										
FAM194A	0	genome.wustl.edu	37	chr3	150387188	150387188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cttggactatacaagtaaaaCcatttaccttgttgggcact	7	9	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	150387188	150387188	C	T	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	missense	c.1394	p.G465D	0.731	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	252	0	0	362	97	21.13	-	-	-	T	150387188	C	T	150387188	3	4	641	1	0	0	0	0	1	0	0	0	5568	507	18	4	609	4	FAM194A	3	150387188	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	27972751	150387188	47635242	26	55144										
RFC4	0	genome.wustl.edu	37	chr3	186518913	186518913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atttgcaactcacatctgctCcttctaaagattttttcagc	4	11	4	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	3	186518913	186518913	C	G	SNP	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	missense	c.203	p.G68A	1.000	NULL	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	108	0	0	136	79	36.57	-	-	-	G	186518913	C	G	186518913	3	3	641	1	0	0	0	0	1	0	0	0	13330	855	30	2	924	2	RFC4	3	186518913	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	36131725	186518913	11503517	27	55145										
PCDHA7	0	genome.wustl.edu	37	chr5	140214974	140214974	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccctggctggtcattgtacaGttcttgtggaagttgtggat	13	7	2	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	5	140214974	140214974	G	C	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.1006	p.V336L	0.265	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	217	0	0	138	81	36.99	-	-	-	C	140214974	G	C	140214974	3	2	641	1	0	0	0	0	1	0	0	0	11602	1029	36	4	1008	4	PCDHA7	5	140214974	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		140214974	40700286	28	55146										
KHDRBS2	0	genome.wustl.edu	37	chr6	62688082	62688082	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	agctcatcactcaagtgggcAtatttggcttccccactctt	7	13	4	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	6	62688082	62688082	A	G	SNP	KHDRBS2	ENST00000281156	human	ensembl	69_37n	-1	known	silent	c.372	p.Y124	1.000	smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232	122	0	0	139	63	31.19	-	-	-	G	62688082	A	G	62688082	2	3	641	1	0	0	0	0	0	0	0	1	8199	224	8	5		5	KHDRBS2	6	62688082	Silent	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09		62688082	108426985	29	55147										
FAM46A	0	genome.wustl.edu	37	chr6	82461505	82461505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gctgccgagccgttgaggcgCacgtcgcggacgccaatgcg	16	14	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	6	82461505	82461505	C	A	SNP	FAM46A	ENST00000412306	human	ensembl	69_37n	-1	known	missense	c.25	p.A9S	1.000	pfam_DUF1693	pfam_DUF1693	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	FAM46A	HGNC	ENSG00000112773	16	0	0	26	16	38.1	-	-	-	A	82461505	C	A	82461505	3	1	641	1	0	0	0	0	1	0	0	0	5611	697	25	4	982	4	FAM46A	6	82461505	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	19773423	82461505	88653562	30	55148										
AIG1	0	genome.wustl.edu	37	chr6	143486276	143486276	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	acagagagatgatatacccgAagctgctggataattttatc	9	7	0	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	6	143486276	143486276	A	T	SNP	AIG1	ENST00000275235	human	ensembl	69_37n	1	known	nonsense	c.355	p.K119*	1.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	AIG1	HGNC	ENSG00000146416	168	0	0	212	97	31.39	-	-	-	T	143486276	A	T	143486276	4	4	641	1	0	0	0	0	0	1	0	0	429	247	9	5	365	5	AIG1	6	143486276	Nonsense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	61024771	143486276	27628791	31	55149										
STXBP5	0	genome.wustl.edu	37	chr6	147556463	147556463	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccagctccagttcctgattaAtgaggttagtgaattgtttt	9	7	0	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	6	147556463	147556463	A	G	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.326	p.N109S	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	87	0	0	104	49	32.03	-	-	-	G	147556463	A	G	147556463	3	3	641	1	0	0	0	0	1	0	0	0	15447	101	4	5	336	5	STXBP5	6	147556463	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	4070187	147556463	23558604	32	55150										
ELN	0	genome.wustl.edu	37	chr7	73474244	73474244	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cctggtgtcggcgtggctccTggagttggcgtggctcctgg	18	11	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	7	73474244	73474244	T	A	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	silent	c.1548	p.P516	0.001	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	701	0	0	926	195	17.14	-	-	-	A	73474244	T	A	73474244	2	1	641	1	0	0	0	0	0	0	0	1	5108	1567	55	5		5	ELN	7	73474244	Silent	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09		73474244	85664419	33	55151										
SRCRB4D	0	genome.wustl.edu	37	chr7	76019578	76019578	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	agcccagctggcggcacaggAcaccggctgcccgcaggtcc	14	17	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	7	76019578	76019578	A	T	SNP	SRCRB4D	ENST00000275560	human	ensembl	69_37n	-1	known	missense	c.1526	p.V509D	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	SRCRB4D	HGNC	ENSG00000146700	39	0	0	33	21	37.5	-	-	-	T	76019578	A	T	76019578	3	4	641	1	0	0	0	0	1	0	0	0	15228	275	10	5	205	5	SRCRB4D	7	76019578	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	2545334	76019578	83119085	34	55152										
PPP1R3A	0	genome.wustl.edu	37	chr7	113558810	113558810	+	Frame_Shift_Del	DEL	T	T	-													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cactcggtaattcccagcaaTcaaattctttaacagacaca							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	7	113558810	113558810	T	-	DEL	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	frame_shift_del	c.242	p.D81fs	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	61	0	0	72	20	20.83	-	-	-	-	113558810	T	-	113558810	7	5	641	1	0	1	0	1	0	0	0	0	12448	1435	50	0	3142	0	PPP1R3A	7	113558810	Frame_Shift_Del	DEL	T	TCGA-C8-A134-01A-11D-A10Y-09	37539232	113558810	45579853	35	55153	434	2								
PPP1R3A	0	genome.wustl.edu	37	chr7	113558812	113558812	+	Missense_Mutation	SNP	A	A	C													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ctcggtaattcccagcaatcAaattctttaacagacacaag							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	7	113558812	113558812	A	C	SNP	PPP1R3A	ENST00000284601	human	ensembl	69_37n	-1	known	missense	c.240	p.F80L	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415	63	0	0	74	23	23.71	-	-	-	C	113558812	A	C	113558812	3	2	641	1	0	0	0	0	1	0	0	0	12448	127	5	5	3144	5	PPP1R3A	7	113558812	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	2	113558812	45579851	36	55154	434	2								
CFTR	0	genome.wustl.edu	37	chr7	117267576	117267576	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgttgttatttttatttcagAtgcgatctgtgagccgagtc	10	6	2	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	7	117267576	117267576	A	T	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.3469	p.M1157L	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	57	0	0	121	27	18.24	-	-	-	T	117267576	A	T	117267576	3	4	641	1	0	0	0	0	1	0	0	0	3323	347	12	5	3555	5	CFTR	7	117267576	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	3708764	117267576	41871087	37	55155										
CPNE3	0	genome.wustl.edu	37	chr8	87549810	87549810	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ggatctatttggaaagtcagAcccatacctggaattccaca	8	10	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	8	87549810	87549810	A	T	SNP	CPNE3	ENST00000198765	human	ensembl	69_37n	1	known	missense	c.479	p.D160V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE3	HGNC	ENSG00000085719	154	0	0	308	75	19.53	-	-	-	T	87549810	A	T	87549810	3	4	641	1	0	0	0	0	1	0	0	0	3843	275	10	5	497	5	CPNE3	8	87549810	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09		87549810	58814212	38	55156										
RAD21	0	genome.wustl.edu	37	chr8	117862992	117862992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	acaggtggtatttccatctgCtctacctgctgaggcttaaa	9	10	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	8	117862992	117862992	C	A	SNP	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	missense	c.1485	p.E495D	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	193	0	0	390	94	19.38	-	-	-	A	117862992	C	A	117862992	3	1	641	1	0	0	0	0	1	0	0	0	13064	796	28	4	422	4	RAD21	8	117862992	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	30313182	117862992	28501030	39	55157										
FLJ43860	0	genome.wustl.edu	37	chr8	142481219	142481219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	caggctgcagcgctgggtggCcctgtctgggtcctggcaca	16	13	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	8	142481219	142481219	C	A	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.1942	p.A648S	0.008	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	154	0	0	264	139	34.24	-	-	-	A	142481219	C	A	142481219	3	1	641	1	0	0	0	0	1	0	0	0	5976	739	26	4	2074	4	FLJ43860	8	142481219	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	24618227	142481219	3882803	40	55158										
MFSD3	0	genome.wustl.edu	37	chr8	145735356	145735356	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gggacgtgctagccgtgccgGggaccgtgtggacggcaggc	20	11	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	8	145735356	145735356	G	C	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	1	known	missense	c.640	p.G214R	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	34	0	0	91	26	22.22	-	-	-	C	145735356	G	C	145735356	3	2	641	1	0	0	0	0	1	0	0	0	9603	1232	43	4	642	4	MFSD3	8	145735356	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	3254137	145735356	628666	41	55159										
SLC24A2	0	genome.wustl.edu	37	chr9	19786554	19786554	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tctcagactcgccttccttaGaaagaggtggctgtggagta	12	9	1	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	9	19786554	19786554	G	T	SNP	SLC24A2	ENST00000341998	human	ensembl	69_37n	-1	known	missense	c.311	p.S104Y	0.885	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A2	HGNC	ENSG00000155886	73	0	0	78	40	33.9	-	-	-	T	19786554	G	T	19786554	3	4	641	1	0	0	0	0	1	0	0	0	14555	942	33	2	1714	2	SLC24A2	9	19786554	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		19786554	121426877	42	55160										
TEK	0	genome.wustl.edu	37	chr9	27109613	27109613	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	actctttagccagcttagttCtctgtggagtcagcttgctc	9	11	3	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	9	27109613	27109613	C	T	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.25	p.L9F	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	236	0	0	335	142	29.71	-	-	-	T	27109613	C	T	27109613	3	4	641	1	0	0	0	0	1	0	0	0	15846	913	32	2	27	2	TEK	9	27109613	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	7323059	27109613	114103818	43	55161										
ADAMTS14	0	genome.wustl.edu	37	chr10	72468454	72468454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gcagctacagcatcgaggtgCtgctggtggtggacgactcg	16	10	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	10	72468454	72468454	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	silent	c.790	p.L264	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	102	0	0	176	114	39.31	-	-	-	T	72468454	C	T	72468454	2	4	641	1	0	0	0	0	0	0	0	1	259	796	28	4		4	ADAMTS14	10	72468454	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		72468454	63066293	44	55162										
ZMIZ1	0	genome.wustl.edu	37	chr10	81067225	81067225	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gaaccctggagggacatccaTgaatgacttcatgcacgggc	12	11	1	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	10	81067225	81067225	T	G	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.2732	p.M911R	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	93	0	0	109	58	34.73	-	-	-	G	81067225	T	G	81067225	3	3	641	1	0	0	0	0	1	0	0	0	17792	1464	51	5	2806	5	ZMIZ1	10	81067225	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	8598771	81067225	54467522	45	55163										
MUC5B	0	genome.wustl.edu	37	chr11	1269276	1269276	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccagggaccacctggatcctCacagagccgagcactacagc	10	16	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	1269276	1269276	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.11175	p.L3725	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	79	0	0	90	49	35.25	-	-	-	G	1269276	C	G	1269276	2	3	641	1	0	0	0	0	0	0	0	1	10051	813	29	2		2	MUC5B	11	1269276	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		1269276	133737240	46	55164										
ART5	0	genome.wustl.edu	37	chr11	3660979	3660980	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ggtaaccaaaaagacttcatINSgggggggaatcagcacctcg							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	3660979	3660980	-	G	INS	ART5	ENST00000359918	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.H227fs	0.986:0.988	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311	39	0	0	39	14	26.42	-	-	-	G	3660980	-	G	3660979	7	5	641	1	0	1	1	0	0	0	0	0	1004	1464	51	0	207	0	ART5	11	3660979	Frame_Shift_Ins	INS	-	TCGA-C8-A134-01A-11D-A10Y-09	2391703	3660979	131345537	47	55165										
OR52A1	0	genome.wustl.edu	37	chr11	5172768	5172768	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	caagtaaatgctagaaaagaGaatatggatataaggggaga	12	2	0	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	5172768	5172768	G	T	SNP	OR52A1	ENST00000328942	human	ensembl	69_37n	-1	known	missense	c.832	p.L278I	0.015	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52A1	HGNC	ENSG00000182070	194	0	0	218	79	26.6	-	-	-	T	5172768	G	T	5172768	3	4	641	1	0	0	0	0	1	0	0	0	11181	942	33	2	108	2	OR52A1	11	5172768	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	1511789	5172768	129833748	48	55166										
NAV2	0	genome.wustl.edu	37	chr11	19961292	19961292	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccagccacttcaccaagactGgacagcctgctctggaagaa	9	14	2	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	19961292	19961292	G	T	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	nonsense	c.2188	p.G730*	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	115	0	0	198	86	30.18	-	-	-	T	19961292	G	T	19961292	4	4	641	1	0	0	0	0	0	1	0	0	10256	1349	47	4	2228	4	NAV2	11	19961292	Nonsense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	14788524	19961292	115045224	49	55167										
PRMT3	0	genome.wustl.edu	37	chr11	20417383	20417383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tatgaaccggtgtcagtaccCttctcataccccaatggact	7	13	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	20417383	20417383	C	T	SNP	PRMT3	ENST00000331079	human	ensembl	69_37n	1	known	silent	c.435	p.P145	0.340	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238	129	0	0	169	99	36.94	-	-	-	T	20417383	C	T	20417383	2	4	641	1	0	0	0	0	0	0	0	1	12619	668	24	4		4	PRMT3	11	20417383	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	456091	20417383	114589133	50	55168										
LGR4	0	genome.wustl.edu	37	chr11	27390302	27390302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cggaactgtttgagatgattGctcttcccatttttcattat	7	8	2	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	27390302	27390302	G	T	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	missense	c.1968	p.S656R	0.750	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	100	0	0	156	44	22	-	-	-	T	27390302	G	T	27390302	3	4	641	1	0	0	0	0	1	0	0	0	8811	1310	46	4	891	4	LGR4	11	27390302	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	6972919	27390302	107616214	51	55169										
RAG2	0	genome.wustl.edu	37	chr11	36614637	36614637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atgtttgactgtttgtgaatGttgtctgctcttcattagta	9	5	3	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	36614637	36614637	G	A	SNP	RAG2	ENST00000311485	human	ensembl	69_37n	-1	known	missense	c.1082	p.T361I	0.059	pfam_RAG2	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_Znf_FYVE_PHD	-	no_errors	RAG2	HGNC	ENSG00000175097	236	0	0	290	125	30.12	-	-	-	A	36614637	G	A	36614637	3	1	641	1	0	0	0	0	1	0	0	0	13088	1377	48	4	505	4	RAG2	11	36614637	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	9224335	36614637	98391879	52	55170										
MADD	0	genome.wustl.edu	37	chr11	47315517	47315517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gcgcagacagtggtgtgagcCtgacgtctagttcccaggtt	14	10	1	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	47315517	47315517	C	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.3499	p.L1167M	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	180	0	0	227	152	40.11	-	-	-	A	47315517	C	A	47315517	3	1	641	1	0	0	0	0	1	0	0	0	9219	680	24	4	3581	4	MADD	11	47315517	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	10700880	47315517	87690999	53	55171										
CELF1	0	genome.wustl.edu	37	chr11	47506035	47506035	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atgtcattttcagtgcacttCttggaaatcataccaataaa	5	8	4	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	47506035	47506035	C	G	SNP	CELF1	ENST00000532048	human	ensembl	69_37n	-1	known	missense	c.429	p.K143N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187	97	0	0	110	46	29.49	-	-	-	G	47506035	C	G	47506035	3	3	641	1	0	0	0	0	1	0	0	0	3244	912	32	2	1148	2	CELF1	11	47506035	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	190518	47506035	87500481	54	55172										
DAGLA	0	genome.wustl.edu	37	chr11	61503794	61503794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gaaactggagcaggagatggTcctgtcccaggcctttgggc	15	10	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	61503794	61503794	T	C	SNP	DAGLA	ENST00000257215	human	ensembl	69_37n	1	known	missense	c.1343	p.V448A	1.000	pfam_Lipase_3	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	93	0	0	135	50	26.74	-	-	-	C	61503794	T	C	61503794	3	2	641	1	0	0	0	0	1	0	0	0	4258	1667	58	5	1389	5	DAGLA	11	61503794	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	13997759	61503794	73502722	55	55173										
FAT3	0	genome.wustl.edu	37	chr11	92531478	92531478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttgatgaaaatgataatgccCcagtttttctcttttctcaa	5	8	2	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	92531478	92531478	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.5299	p.P1767S	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	33	0	0	43	18	29.51	-	-	-	T	92531478	C	T	92531478	3	4	641	1	0	0	0	0	1	0	0	0	5737	623	22	4	5333	4	FAT3	11	92531478	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	31027684	92531478	42475038	56	55174										
PHLDB1	0	genome.wustl.edu	37	chr11	118498583	118498583	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gaggcccggagagccactgaGagcccccggctgggtgggca	18	13	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	118498583	118498583	G	T	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.1044	p.E348D	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	13	0	0	13	9	40.91	-	-	-	T	118498583	G	T	118498583	3	4	641	1	0	0	0	0	1	0	0	0	11925	933	33	2	1062	2	PHLDB1	11	118498583	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	25967105	118498583	16507933	57	55175										
OR8B12	0	genome.wustl.edu	37	chr11	124412667	124412667	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tcctcagggcaactttgacaTccttgttcctcaagctatag	7	12	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	11	124412667	124412667	T	A	SNP	OR8B12	ENST00000306842	human	ensembl	69_37n	-1	known	missense	c.884	p.D295V	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B12	HGNC	ENSG00000170953	92	0	0	100	31	23.66	-	-	-	A	124412667	T	A	124412667	3	1	641	1	0	0	0	0	1	0	0	0	11299	1435	50	5	50	5	OR8B12	11	124412667	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	5914084	124412667	10593849	58	55176										
RIC8B	0	genome.wustl.edu	37	chr12	107208904	107208904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	attgcgctatgagctccaggGactaccgctgctaacgcaga	11	12	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	12	107208904	107208904	G	T	SNP	RIC8B	ENST00000392837	human	ensembl	69_37n	1	known	missense	c.563	p.G188V	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785	153	0	0	126	107	45.73	-	-	-	T	107208904	G	T	107208904	3	4	641	1	0	0	0	0	1	0	0	0	13440	1174	41	2	573	2	RIC8B	12	107208904	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		107208904	26642991	59	55177										
RPH3A	0	genome.wustl.edu	37	chr12	113314597	113314597	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atctgcagctgccccccagcCtgctgcagcccgccagccac	9	21	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	12	113314597	113314597	C	G	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.1097	p.P366R	0.001	NULL	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	32	0	0	31	16	33.33	-	-	-	G	113314597	C	G	113314597	3	3	641	1	0	0	0	0	1	0	0	0	13637	681	24	4	1139	4	RPH3A	12	113314597	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	6105693	113314597	20537298	60	55178										
SLC25A15	0	genome.wustl.edu	37	chr13	41373296	41373296	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ctcaccgactgctgcctgaaGacttactcccaggtgggctt	10	14	1	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	13	41373296	41373296	G	T	SNP	SLC25A15	ENST00000338625	human	ensembl	69_37n	1	known	missense	c.159	p.K53N	0.979	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A15	HGNC	ENSG00000102743	145	0	0	208	98	32.03	-	-	-	T	41373296	G	T	41373296	3	4	641	1	0	0	0	0	1	0	0	0	14566	933	33	2	165	2	SLC25A15	13	41373296	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		41373296	73796582	61	55179										
TTC9	0	genome.wustl.edu	37	chr14	71109059	71109059	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gcgcagtgctacaaggacaaGaaattccgtgaagccatagg	12	9	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	14	71109059	71109059	G	T	SNP	TTC9	ENST00000256367	human	ensembl	69_37n	1	known	missense	c.213	p.K71N	1.000	smart_TPR_repeat	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9	HGNC	ENSG00000133985	10	0	0	7	9	56.25	-	-	-	T	71109059	G	T	71109059	3	4	641	1	0	0	0	0	1	0	0	0	16812	933	33	2	215	2	TTC9	14	71109059	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		71109059	36240481	62	55180										
DNAL1	0	genome.wustl.edu	37	chr14	74125593	74125593	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atctgaagccaaagagataaAactttatgcccagattcccc	6	11	1	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	14	74125593	74125593	A	C	SNP	DNAL1	ENST00000553645	human	ensembl	69_37n	1	known	missense	c.86	p.K29T	1.000	NULL	NULL	-	no_errors	DNAL1	HGNC	ENSG00000119661	132	0	0	61	79	56.43	-	-	-	C	74125593	A	C	74125593	3	2	641	1	0	0	0	0	1	0	0	0	4692	14	1	5	96	5	DNAL1	14	74125593	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	3016534	74125593	33223947	63	55181										
UNC13C	0	genome.wustl.edu	37	chr15	54590072	54590073	+	Frame_Shift_Ins	INS	-	-	G													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	aaaatcaatgtggagataaaINSaggagaagagaaggttgctc							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	15	54590072	54590073	-	G	INS	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	frame_shift_ins	c.4052_4053	p.G1352fs	1.000:1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	126	0	0	94	124	56.88	-	-	-	G	54590073	-	G	54590072	7	5	641	1	0	1	1	0	0	0	0	0	17083	14	1	0	4090	0	UNC13C	15	54590072	Frame_Shift_Ins	INS	-	TCGA-C8-A134-01A-11D-A10Y-09		54590072	47941320	64	55182	435	2								
UNC13C	0	genome.wustl.edu	37	chr15	54590073	54590073	+	Silent	SNP	A	A	G													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	aaaatcaatgtggagataaaAggagaagagaaggttgctcc							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	15	54590073	54590073	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	silent	c.4053	p.K1351	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	127	0	0	75	146	66.06	-	-	-	G	54590073	A	G	54590073	2	3	641	1	0	0	0	0	0	0	0	1	17083	69	3	5		5	UNC13C	15	54590073	Silent	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	1	54590073	47941319	65	55183	435	2								
RASL12	0	genome.wustl.edu	37	chr15	65350882	65350882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgctgctatcaaagctctggCggctgtcgacgctgtacacc	11	13	2	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	15	65350882	65350882	C	T	SNP	RASL12	ENST00000220062	human	ensembl	69_37n	-1	known	missense	c.308	p.R103H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL12	HGNC	ENSG00000103710	47	0	0	80	46	36.51	-	-	-	T	65350882	C	T	65350882	3	4	641	1	0	0	0	0	1	0	0	0	13166	768	27	1	500	1	RASL12	15	65350882	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	10760809	65350882	37180510	66	55184										
TLE3	0	genome.wustl.edu	37	chr15	70350527	70350527	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ccatgcccggaggtttacccGgcatcgacctgagccctggg	13	15	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	15	70350527	70350527	G	C	SNP	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	missense	c.1022	p.P341R	0.787	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	281	0	0	189	365	65.77	-	-	-	C	70350527	G	C	70350527	3	2	641	1	0	0	0	0	1	0	0	0	16035	1116	39	3	1332	3	TLE3	15	70350527	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	4999645	70350527	32180865	67	55185										
MSLNL	0	genome.wustl.edu	37	chr16	820069	820069	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tcgttcgtgggcaggcccgaGgtgtggaccagatggagcac	17	10	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	16	820069	820069	G	T	SNP	MSLNL	ENST00000293892	human	ensembl	69_37n	-1	known	silent	c.2916	p.T972	0.004	NULL	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006	50	0	0	51	26	33.77	-	-	-	T	820069	G	T	820069	2	4	641	1	0	0	0	0	0	0	0	1	9954	987	35	4		4	MSLNL	16	820069	Silent	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09		820069	89534684	68	55186										
GPR139	0	genome.wustl.edu	37	chr16	20043104	20043104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atttttgtcatactggtacaCcagcatcttgatgcagtgtg	9	8	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	16	20043104	20043104	C	A	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	missense	c.1015	p.V339L	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	110	0	0	142	62	30.39	-	-	-	A	20043104	C	A	20043104	3	1	641	1	0	0	0	0	1	0	0	0	6698	507	18	4	50	4	GPR139	16	20043104	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	19223035	20043104	70311649	69	55187										
CTCF	0	genome.wustl.edu	37	chr16	67645098	67645098	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cttgttcaagtacctgttccTgtgactgtacctgttgctac	8	11	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	16	67645098	67645098	T	A	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	silent	c.363	p.P121	0.891	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	105	0	0	80	10	11.11	-	-	-	A	67645098	T	A	67645098	2	1	641	1	0	0	0	0	0	0	0	1	4032	1567	55	5		5	CTCF	16	67645098	Silent	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	47601994	67645098	22709655	70	55188										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	155	0	0	105	98	48.28	-	-	-	T	7577120	C	T	7577120	3	4	641	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		7577120	73618090	71	55189										
CCDC144A	0	genome.wustl.edu	37	chr17	16623911	16623911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gcctcagaggattgtgaattGtctcactctgtttatgagaa	10	7	3	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	17	16623911	16623911	G	C	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.1830	p.L610F	0.001	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	479	0	0	350	86	19.68	-	-	-	C	16623911	G	C	16623911	3	2	641	1	0	0	0	0	1	0	0	0	2802	1368	48	4	1860	4	CCDC144A	17	16623911	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	9046791	16623911	64571299	72	55190										
CCDC144B	0	genome.wustl.edu	37	chr17	18498095	18498095	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttctcataaacagagtgagaCaattcacaatcctctgaggc	7	10	3	3			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	17	18498095	18498095	C	G	SNP	CCDC144B	ENST00000425214	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC144B	HGNC	ENSG00000154874	75	0	0	51	37	42.05	-	-	-	G	18498095	C	G	18498095	1	3	641	0	1	0	0	0	0	0	0	0	2803	477	17	4		4	CCDC144B	17	18498095	RNA	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	1874184	18498095	62697115	73	55191										
C17orf47	0	genome.wustl.edu	37	chr17	56620214	56620214	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	agcacttaggctcaaaatccGgtgttgtcagctggctttgg	12	9	2	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	17	56620214	56620214	G	A	SNP	C17orf47	ENST00000321691	human	ensembl	69_37n	-1	known	missense	c.1334	p.P445L	0.152	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013	139	0	0	134	60	30.77	-	-	-	A	56620214	G	A	56620214	3	1	641	1	0	0	0	0	1	0	0	0	1873	1116	39	1	386	1	C17orf47	17	56620214	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	38122119	56620214	24574996	74	55192										
CDH2	0	genome.wustl.edu	37	chr18	25572679	25572679	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gtctggatggcgaaccgtccAgtaggatctccgccactgat	12	12	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	18	25572679	25572679	A	G	SNP	CDH2	ENST00000269141	human	ensembl	69_37n	-1	known	silent	c.1284	p.T428	0.026	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558	188	0	0	358	97	21.18	-	-	-	G	25572679	A	G	25572679	2	3	641	1	0	0	0	0	0	0	0	1	3134	175	7	5		5	CDH2	18	25572679	Silent	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09		25572679	52504569	75	55193										
CNDP1	0	genome.wustl.edu	37	chr18	72226583	72226583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gaaggagtgggtggccatcgAgagcgactctgtccagcctg	16	10	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	18	72226583	72226583	A	C	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	missense	c.179	p.E60A	1.000	pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	87	0	0	113	48	29.45	-	-	-	C	72226583	A	C	72226583	3	2	641	1	0	0	0	0	1	0	0	0	3623	304	11	5	189	5	CNDP1	18	72226583	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	46653904	72226583	5850665	76	55194										
ZNF491	0	genome.wustl.edu	37	chr19	11917733	11917733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	atatcatgaaaggactcacaCtggagagaaacccgatgggt	11	8	2	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	19	11917733	11917733	C	T	SNP	ZNF491	ENST00000323169	human	ensembl	69_37n	1	known	missense	c.965	p.T322I	0.991	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC	ENSG00000177599	109	0	0	88	37	29.6	-	-	-	T	11917733	C	T	11917733	3	4	641	1	0	0	0	0	1	0	0	0	18038	565	20	4	967	4	ZNF491	19	11917733	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		11917733	47211250	77	55195										
CYP2A7	0	genome.wustl.edu	37	chr19	41384689	41384689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgcatgtggatgagaaaggaGtcgatgaagtcctgtgggga	17	4	0	2			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	19	41384689	41384689	G	A	SNP	CYP2A7	ENST00000301146	human	ensembl	69_37n	-1	known	silent	c.807	p.D269	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077	237	0	0	248	119	32.43	-	-	-	A	41384689	G	A	41384689	2	1	641	1	0	0	0	0	0	0	0	1	4194	1020	36	4		4	CYP2A7	19	41384689	Silent	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	29466956	41384689	17744294	78	55196										
ZNF418	0	genome.wustl.edu	37	chr19	58437810	58437810	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cagtgtgaactctcctgtgtTcaaggagactggagaagaat	12	7	2	4			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	19	58437810	58437810	T	C	SNP	ZNF418	ENST00000425570	human	ensembl	69_37n	-1	known	missense	c.1802	p.E601G	0.016	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	132	0	0	146	64	30.48	-	-	-	C	58437810	T	C	58437810	3	2	641	1	0	0	0	0	1	0	0	0	17991	1783	62	5	295	5	ZNF418	19	58437810	Missense_Mutation	SNP	T	TCGA-C8-A134-01A-11D-A10Y-09	17053121	58437810	691173	79	55197										
AHCY	0	genome.wustl.edu	37	chr20	32880287	32880287	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	aatgcaccacaggtactcctCgtccgtttcgcccttccagg	8	16	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	20	32880287	32880287	C	G	SNP	AHCY	ENST00000217426	human	ensembl	69_37n	-1	known	missense	c.322	p.E108Q	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444	97	0	0	153	138	47.26	-	-	-	G	32880287	C	G	32880287	3	3	641	1	0	0	0	0	1	0	0	0	409	893	31	3	1004	3	AHCY	20	32880287	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		32880287	30145233	80	55198										
C20orf151	0	genome.wustl.edu	37	chr20	60988927	60988927	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cactctggtccccttggtgcCattgctgagtgcctggggac	13	13	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	20	60988927	60988927	C	A	SNP	C20orf151	ENST00000252998	human	ensembl	69_37n	-1	known	missense	c.1480	p.G494C	0.166	NULL	pfam_CtIP_N	-	no_errors	C20orf151	HGNC	ENSG00000130701	23	0	0	55	14	20.29	-	-	-	A	60988927	C	A	60988927	3	1	641	1	0	0	0	0	1	0	0	0	2111	594	21	4	534	4	C20orf151	20	60988927	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	28108640	60988927	2036593	81	55199										
HSPA13	0	genome.wustl.edu	37	chr21	15750638	15750638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gcctctgccatttcctttaaCttcaacaatagtcgagagcc	6	13	2	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	21	15750638	15750638	C	T	SNP	HSPA13	ENST00000285667	human	ensembl	69_37n	-1	known	silent	c.462	p.K154	0.982	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA13	HGNC	ENSG00000155304	120	0	0	126	61	32.62	-	-	-	T	15750638	C	T	15750638	2	4	641	1	0	0	0	0	0	0	0	1	7459	564	20	4		4	HSPA13	21	15750638	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09		15750638	32379257	82	55200										
ITGB2	0	genome.wustl.edu	37	chr21	46308699	46308699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	cagccctctgagtccctctcCttgcaggtcctgcccttcac	7	19	3	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	21	46308699	46308699	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	silent	c.1989	p.K663	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	52	0	0	122	44	26.51	-	-	-	T	46308699	C	T	46308699	2	4	641	1	0	0	0	0	0	0	0	1	7948	680	24	4		4	ITGB2	21	46308699	Silent	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	30558061	46308699	1821196	83	55201										
CXorf22	0	genome.wustl.edu	37	chrX	35984726	35984726	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	catcaacttggagtcttcaaAgtgaagcagatgatagagat	10	6	3	4			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	35984726	35984726	A	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.1455	p.K485N	1.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	198	0	0	179	86	32.45	-	-	-	T	35984726	A	T	35984726	3	4	641	1	0	0	0	0	1	0	0	0	4133	69	3	5	1489	5	CXorf22	23	35984726	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09		35984726	119285834	84	55202										
EDA2R	0	genome.wustl.edu	37	chrX	65819549	65819549	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gtgtggggaagccactagtcGagctgcagtcgtcctcgagg	16	10	0	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	65819549	65819549	G	C	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	missense	c.734	p.S245W	0.186	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	82	0	0	75	29	27.88	-	-	-	C	65819549	G	C	65819549	3	2	641	1	0	0	0	0	1	0	0	0	4939	1059	37	3	226	3	EDA2R	23	65819549	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	29834823	65819549	89451011	85	55203										
RPS6KA6	0	genome.wustl.edu	37	chrX	83319326	83319326	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ctttttcatgctccgtcgctGggctaagcttgaagcagcta	10	11	1	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	83319326	83319326	G	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	missense	c.2197	p.Q733K	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	212	0	0	239	102	29.82	-	-	-	T	83319326	G	T	83319326	3	4	641	1	0	0	0	0	1	0	0	0	13741	1357	47	4	44	4	RPS6KA6	23	83319326	Missense_Mutation	SNP	G	TCGA-C8-A134-01A-11D-A10Y-09	17499777	83319326	71951234	86	55204										
H2BFWT	0	genome.wustl.edu	37	chrX	103267771	103267771	+	Frame_Shift_Del	DEL	G	G	-													0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gccttcgtgccttcggactcGgcgagcttgcccatctgccc							TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	103267771	103267771	G	-	DEL	H2BFWT	ENST00000217926	human	ensembl	69_37n	-1	known	frame_shift_del	c.462	p.E155fs	0.988	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569	35	0	0	46	16	25.81	-	-	-	-	103267771	G	-	103267771	7	5	641	1	0	1	0	1	0	0	0	0	6983	1103	39	0	73	0	H2BFWT	23	103267771	Frame_Shift_Del	DEL	G	TCGA-C8-A134-01A-11D-A10Y-09	19948445	103267771	52002789	87	55205										
TBC1D8B	0	genome.wustl.edu	37	chrX	106065364	106065364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	ttattggaaaggacgggttcCttgtcagggttggctttatc	13	6	1	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	106065364	106065364	C	A	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.518	p.P173H	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	221	0	0	253	87	25.59	-	-	-	A	106065364	C	A	106065364	3	1	641	1	0	0	0	0	1	0	0	0	15721	681	24	4	532	4	TBC1D8B	23	106065364	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	2797593	106065364	49205196	88	55206										
IGSF1	0	genome.wustl.edu	37	chrX	130419141	130419141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	tgccagatgccagcagccatAgccacacccacctgctacaa	7	17	0	1			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	130419141	130419141	A	G	SNP	IGSF1	ENST00000370900	human	ensembl	69_37n	-1	known	missense	c.679	p.Y227H	0.758	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	68	0	0	76	37	32.74	-	-	-	G	130419141	A	G	130419141	3	3	641	1	0	0	0	0	1	0	0	0	7650	420	15	5	3472	5	IGSF1	23	130419141	Missense_Mutation	SNP	A	TCGA-C8-A134-01A-11D-A10Y-09	24353777	130419141	24851419	89	55207										
SLC10A3	0	genome.wustl.edu	37	chrX	153716008	153716008	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	4	0.91716427812284	0.903403403403403	1.04456018518519	0.795855379188713	1	1	0	gccaaggccagcaggctgttCtgcacccctacctcaatgct	9	16	2	0			TCGA-C8-A134-01A-11D-A10Y-09	TCGA-C8-A134-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3e8738b-2456-4f08-bb3d-5debb4265f85	b25af510-abd7-402a-96bf-6532cb18ec71	X	153716008	153716008	C	A	SNP	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	missense	c.1272	p.Q424H	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	33	0	0	51	15	22.73	-	-	-	A	153716008	C	A	153716008	3	1	641	1	0	0	0	0	1	0	0	0	14464	912	32	2	165	2	SLC10A3	23	153716008	Missense_Mutation	SNP	C	TCGA-C8-A134-01A-11D-A10Y-09	23296867	153716008	1554552	90	55208										
PLCH2	0	genome.wustl.edu	37	chr1	2430266	2430266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	acccgcgtggtggacgacaaCggtgaggctgggccgtggct	18	11	0	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	1	2430266	2430266	C	T	SNP	PLCH2	ENST00000419816	human	ensembl	69_37n	1	known	missense	c.317	p.T106M	0.914	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PLipase_C_Pinositol-sp_Y,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_Pinositol-sp_Y	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCH2	HGNC	ENSG00000149527	67	0	0	25	11	30.56	-	-	-	T	2430266	C	T	2430266	3	4	642	1	0	0	0	0	1	0	0	0	12112	550	19	1	2503	1	PLCH2	1	2430266	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09		2430266	246820355	1	55209										
ANGPTL3	0	genome.wustl.edu	37	chr1	63066808	63066808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ttctctatcttccaagccaaGagcaccaagaactactccct	4	15	2	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	1	63066808	63066808	G	C	SNP	ANGPTL3	ENST00000371129	human	ensembl	69_37n	1	known	missense	c.662	p.R221T	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	61	0	0	95	14	12.84	-	-	-	C	63066808	G	C	63066808	3	2	642	1	0	0	0	0	1	0	0	0	615	942	33	2	672	2	ANGPTL3	1	63066808	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	60636542	63066808	186183813	2	55210										
HRNR	0	genome.wustl.edu	37	chr1	152191856	152191856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	acccatgctgaccatagctgGaagacaaacctgagctagat	9	11	0	4			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	1	152191856	152191856	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.2249	p.S750Y	0.004	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	602	0	0	251	58	18.77	-	-	-	T	152191856	G	T	152191856	3	4	642	1	0	0	0	0	1	0	0	0	7410	1174	41	2	6307	2	HRNR	1	152191856	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	89125048	152191856	97058765	3	55211										
CHRNB2	0	genome.wustl.edu	37	chr1	154542778	154542778	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tggaagcctgaagagtttgaCaacatgaagaaagttcggct	12	6	0	5			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	1	154542778	154542778	C	G	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	missense	c.300	p.D100E	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	181	0	0	126	26	16.99	-	-	-	G	154542778	C	G	154542778	3	3	642	1	0	0	0	0	1	0	0	0	3420	477	17	4	314	4	CHRNB2	1	154542778	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	2350922	154542778	94707843	4	55212										
OR2T11	0	genome.wustl.edu	37	chr1	248789815	248789815	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gagatgatagagatggggatGagcaacatgaggacacagca	15	5	0	5			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	1	248789815	248789815	G	T	SNP	OR2T11	ENST00000330803	human	ensembl	69_37n	-1	known	silent	c.615	p.L205	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130	106	0	0	38	14	26.92	-	-	-	T	248789815	G	T	248789815	2	4	642	1	0	0	0	0	0	0	0	1	11091	1277	45	2		2	OR2T11	1	248789815	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	94247037	248789815	460806	5	55213										
MYT1L	0	genome.wustl.edu	37	chr2	1906950	1906950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cgtaactgttgtattcaaacGaggtcttggaatatttctcg	9	7	3	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	1906950	1906950	G	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1934	p.S645L	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	444	0	0	230	63	21.5	-	-	-	A	1906950	G	A	1906950	3	1	642	1	0	0	0	0	1	0	0	0	10179	1059	37	1	1674	1	MYT1L	2	1906950	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		1906950	241292423	6	55214										
EML4	0	genome.wustl.edu	37	chr2	42472741	42472742	+	Frame_Shift_Ins	INS	-	-	A													0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gaagatgaaatcactgtgctINSaaaggcggctttggctgatg							TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	42472741	42472742	-	A	INS	EML4	ENST00000318522	human	ensembl	69_37n	1	known	frame_shift_ins	c.122_123	p.A43fs	0.999:0.353	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	351	0	0	226	53	19	-	-	-	A	42472742	-	A	42472741	7	5	642	1	0	1	1	0	0	0	0	0	5136	1522	53	0	128	0	EML4	2	42472741	Frame_Shift_Ins	INS	-	TCGA-C8-A135-01A-11D-A10Y-09	40565791	42472741	200726632	7	55215										
VPS54	0	genome.wustl.edu	37	chr2	64147047	64147047	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tttttcaggtaaagcaatctTcccatctgacagagaatcaa	6	9	4	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	64147047	64147047	T	C	SNP	VPS54	ENST00000272322	human	ensembl	69_37n	-1	known	missense	c.2134	p.K712E	1.000	NULL	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952	123	0	0	118	25	17.36	-	-	-	C	64147047	T	C	64147047	3	2	642	1	0	0	0	0	1	0	0	0	17313	1792	62	5	835	5	VPS54	2	64147047	Missense_Mutation	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09	21674306	64147047	179052326	8	55216										
NCKAP1	0	genome.wustl.edu	37	chr2	183800041	183800041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	atctctaagtgcttcttgtgCcaatgatcggaaggataaaa	9	7	2	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	183800041	183800041	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.2776	p.A926T	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	206	0	0	225	50	18.18	-	-	-	T	183800041	C	T	183800041	3	4	642	1	0	0	0	0	1	0	0	0	10293	739	26	4	656	4	NCKAP1	2	183800041	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	119652994	183800041	59399332	9	55217										
SGPP2	0	genome.wustl.edu	37	chr2	223423433	223423433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tgtgttgatcctcttggttcGtcagcttgtacaaaatctct	8	9	3	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	223423433	223423433	G	A	SNP	SGPP2	ENST00000321276	human	ensembl	69_37n	1	known	missense	c.1016	p.R339H	0.997	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP2	HGNC	ENSG00000163082	354	0	0	171	32	15.61	-	-	-	A	223423433	G	A	223423433	3	1	642	1	0	0	0	0	1	0	0	0	14308	1145	40	1	1034	1	SGPP2	2	223423433	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	39623392	223423433	19775940	10	55218										
OR6B3	0	genome.wustl.edu	37	chr2	240985219	240985219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gcacccgacgaaagagatgcGtttctgctggaggaggaagc	15	9	1	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	2	240985219	240985219	G	A	SNP	OR6B3	ENST00000319423	human	ensembl	69_37n	-1	known	missense	c.271	p.R91C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6B3	HGNC	ENSG00000178586	380	0	0	151	22	12.72	-	-	-	A	240985219	G	A	240985219	3	1	642	1	0	0	0	0	1	0	0	0	11262	1145	40	1	727	1	OR6B3	2	240985219	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	17561786	240985219	2214154	11	55219										
SCLT1	0	genome.wustl.edu	37	chr4	129880840	129880840	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	catatctctcattttctaatTcattgcactttgcttgtagc	4	10	4	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	4	129880840	129880840	T	A	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	missense	c.962	p.E321V	0.006	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	335	0	0	262	73	21.73	-	-	-	A	129880840	T	A	129880840	3	1	642	1	0	0	0	0	1	0	0	0	13994	1783	62	5	1144	5	SCLT1	4	129880840	Missense_Mutation	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09		129880840	61273436	12	55220										
PIK3R1	0	genome.wustl.edu	37	chr5	67589556	67589556	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ggatcaagttgtcaaagaagAtaatattgaagctgtaggga	12	3	2	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	5	67589556	67589556	A	G	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1319	p.D440G	1.000	superfamily_Guanylate-bd_C,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	24	0	0	58	16	21.62	-	-	-	G	67589556	A	G	67589556	3	3	642	1	0	0	0	0	1	0	0	0	11992	333	12	5	1487	5	PIK3R1	5	67589556	Missense_Mutation	SNP	A	TCGA-C8-A135-01A-11D-A10Y-09		67589556	113325704	13	55221										
PROP1	0	genome.wustl.edu	37	chr5	177421244	177421244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ggtggtgcggtggcggcgccGggagtgcgggcggcccctct	22	12	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	5	177421244	177421244	G	A	SNP	PROP1	ENST00000308304	human	ensembl	69_37n	-1	known	missense	c.205	p.R69W	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	PROP1	HGNC	ENSG00000175325	67	0	0	30	5	13.89	-	-	-	A	177421244	G	A	177421244	3	1	642	1	0	0	0	0	1	0	0	0	12638	1115	39	1	483	1	PROP1	5	177421244	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	109831688	177421244	3494016	14	55222										
HNRNPH1	0	genome.wustl.edu	37	chr5	179043881	179043881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gatatttacacaagcccatgCctcccatcatttggctacca	5	14	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	5	179043881	179043881	C	T	SNP	HNRNPH1	ENST00000356731	human	ensembl	69_37n	-1	known	missense	c.1196	p.G399D	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045	174	0	0	106	34	24.29	-	-	-	T	179043881	C	T	179043881	3	4	642	1	0	0	0	0	1	0	0	0	7317	739	26	4	165	4	HNRNPH1	5	179043881	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	1622637	179043881	1871379	15	55223										
BPHL	0	genome.wustl.edu	37	chr6	3119540	3119540	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	aatcagcctgagcctgagtaCcgctaaggctttaatcacgg	10	11	2	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	6	3119540	3119540	C	A	SNP	BPHL	ENST00000424847	human	ensembl	69_37n	1	known	nonsense	c.129	p.Y43*	0.001	NULL	NULL	-	no_errors	BPHL	HGNC	ENSG00000137274	45	0	0	37	9	19.57	-	-	-	A	3119540	C	A	3119540	4	1	642	1	0	0	0	0	0	1	0	0	1497	522	18	4		4	BPHL	6	3119540	Nonsense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09		3119540	167995527	16	55224										
B3GALT4	0	genome.wustl.edu	37	chr6	33245414	33245414	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tcccggggcccctcccttccTgctcatcctggtgtgcacgg	11	18	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	6	33245414	33245414	T	G	SNP	B3GALT4	ENST00000451237	human	ensembl	69_37n	1	known	missense	c.218	p.L73R	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863	40	0	0	33	5	13.16	-	-	-	G	33245414	T	G	33245414	3	3	642	1	0	0	0	0	1	0	0	0	1253	1580	55	5	220	5	B3GALT4	6	33245414	Missense_Mutation	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09	30125874	33245414	137869653	17	55225										
COL9A1	0	genome.wustl.edu	37	chr6	70942386	70942386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ccattctctccaggagggccGgggggaccaggagggccagg	18	12	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	6	70942386	70942386	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	silent	c.2403	p.P801	0.008	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	67	0	0	54	13	19.4	-	-	-	A	70942386	G	A	70942386	2	1	642	1	0	0	0	0	0	0	0	1	3737	1103	39	1		1	COL9A1	6	70942386	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	37696972	70942386	100172681	18	55226										
ZNF12	0	genome.wustl.edu	37	chr7	6730822	6730822	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ctgaattctggcagaaggttTtcccacattcactacattca	6	11	3	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	7	6730822	6730822	T	C	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	missense	c.1751	p.K584R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	267	0	0	102	45	30.61	-	-	-	C	6730822	T	C	6730822	3	2	642	1	0	0	0	0	1	0	0	0	17814	1841	64	5	346	5	ZNF12	7	6730822	Missense_Mutation	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09		6730822	152407841	19	55227										
KCTD7	0	genome.wustl.edu	37	chr7	66236971	66236974	+	Frame_Shift_Del	DEL	CCTG	CCTG	-													0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gatgtggttactacggcaacCctgcctggcagggtttctgc							TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	CCTG	CCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	7	66236971	66236974	CCTG	-	DEL	KCTD7	ENST00000380828	human	ensembl	69_37n	1	known	frame_shift_del	c.85_88	p.A30fs	0.996:0.997:0.757:1.000	pfam_Znf_A20,smart_Znf_A20,pfscan_Znf_A20	pfam_VPS9,pfam_Znf_A20,smart_Znf_A20,smart_VPS9_subgr,pfscan_VPS9,pfscan_Znf_A20	-	no_errors	KCTD7	HGNC	ENSG00000243335	230	0	0	73	32	30.48	-	-	-	-	66236974	CCTG	-	66236971	7	5	642	1	0	1	0	1	0	0	0	0	8168	623	22	0		0	KCTD7	7	66236971	Frame_Shift_Del	DEL	CCTG	TCGA-C8-A135-01A-11D-A10Y-09	59506149	66236971	92901692	20	55228										
PSMC2	0	genome.wustl.edu	37	chr7	103004751	103004751	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cttgtacagaaatacgtcggTgaggtaaagtaaatttatca	9	5	1	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	7	103004751	103004751	T	C	SNP	PSMC2	ENST00000292644	human	ensembl	69_37n	1	known	silent	c.753	p.G251	0.991	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057	179	0	0	68	32	32	-	-	-	C	103004751	T	C	103004751	2	2	642	1	0	0	0	0	0	0	0	1	12766	1683	59	5		5	PSMC2	7	103004751	Silent	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09	36767780	103004751	56133912	21	55229										
SLC4A2	0	genome.wustl.edu	37	chr7	150761705	150761705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	agacaccccagggcccaggaCggaagcctcgaaggcgcccg	14	16	0	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	7	150761705	150761705	C	T	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.310	p.R104W	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	219	0	0	77	13	14.29	-	-	-	T	150761705	C	T	150761705	3	4	642	1	0	0	0	0	1	0	0	0	14743	527	19	1	320	1	SLC4A2	7	150761705	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	47756954	150761705	8376958	22	55230										
ZFPM2	0	genome.wustl.edu	37	chr8	106815514	106815514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	aacatttcccagaatcctcaGcacgaagacgaccacaaatc	5	14	1	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	8	106815514	106815514	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	silent	c.3204	p.Q1068	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	142	1	0.7	149	40	21.16	-	-	-	A	106815514	G	A	106815514	2	1	642	1	0	0	0	0	0	0	0	1	17754	962	34	4		4	ZFPM2	8	106815514	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		106815514	39548508	23	55231										
ANGPT1	0	genome.wustl.edu	37	chr8	108359218	108359218	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gtctgctctgcagtctgagaGaggaggctggttcctatctc	13	10	4	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	8	108359218	108359218	G	C	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	silent	c.405	p.L135	0.835	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	438	0	0	302	55	15.41	-	-	-	C	108359218	G	C	108359218	2	2	642	1	0	0	0	0	0	0	0	1	610	929	33	2		2	ANGPT1	8	108359218	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	1543704	108359218	38004804	24	55232										
TEK	0	genome.wustl.edu	37	chr9	27209143	27209143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tgcctccaaagatgatcacaGggactttgcaggagaactgg	12	9	1	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	9	27209143	27209143	G	A	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.2600	p.R867K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	208	0	0	134	31	18.79	-	-	-	A	27209143	G	A	27209143	3	1	642	1	0	0	0	0	1	0	0	0	15846	1000	35	4	2662	4	TEK	9	27209143	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		27209143	114004288	25	55233										
AKR1C2	0	genome.wustl.edu	37	chr10	5043762	5043762	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gccatctgcaatcttgcttcGgatggccagtccaacctgct	9	14	2	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	10	5043762	5043762	G	A	SNP	AKR1C2	ENST00000380753	human	ensembl	69_37n	-1	known	nonsense	c.196	p.R66*	0.007	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C2	HGNC	ENSG00000151632	478	0	0	249	51	16.94	-	-	-	A	5043762	G	A	5043762	4	1	642	1	0	0	0	0	0	1	0	0	470	1124	39	1	862	1	AKR1C2	10	5043762	Nonsense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		5043762	130490985	26	55234										
GAD2	0	genome.wustl.edu	37	chr10	26534920	26534920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cagcgtgattctgattaaatGtgatgagaggtgagcacgca	13	6	1	5			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	10	26534920	26534920	G	T	SNP	GAD2	ENST00000259271	human	ensembl	69_37n	1	known	missense	c.911	p.C304F	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD2	HGNC	ENSG00000136750	319	0	0	195	62	23.85	-	-	-	T	26534920	G	T	26534920	3	4	642	1	0	0	0	0	1	0	0	0	6229	1377	48	4	941	4	GAD2	10	26534920	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	21491158	26534920	108999827	27	55235										
ALDH18A1	0	genome.wustl.edu	37	chr10	97386504	97386504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	catccttcctccagatcgcgCcatttctccctgctgctcaa	5	18	2	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	10	97386504	97386504	C	T	SNP	ALDH18A1	ENST00000371224	human	ensembl	69_37n	-1	known	missense	c.1108	p.A370T	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	515	0	0	234	31	11.7	-	-	-	T	97386504	C	T	97386504	3	4	642	1	0	0	0	0	1	0	0	0	489	739	26	4	1315	4	ALDH18A1	10	97386504	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	70851584	97386504	38148243	28	55236										
CAPN1	0	genome.wustl.edu	37	chr11	64973997	64973997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tggccaatgcgtctcgggcgCgctcagagcagttcatcaac	12	13	4	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	11	64973997	64973997	C	T	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.1417	p.R473C	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	89	0	0	46	17	26.98	-	-	-	T	64973997	C	T	64973997	3	4	642	1	0	0	0	0	1	0	0	0	2647	768	27	1	1463	1	CAPN1	11	64973997	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09		64973997	70032519	29	55237										
ACTN3	0	genome.wustl.edu	37	chr11	66322680	66322680	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	actacgccaaactgcgaaagGtagaggcccccaccacccca	8	17	0	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	11	66322680	66322680	G	T	SNP	ACTN3	ENST00000502692	human	ensembl	69_37n	1	known	splice_site	c.765+1	e6+1	1.000	-	-	-	pseudogene	ACTN3	HGNC	ENSG00000248746	283	0	0	225	59	20.77	-	-	-	T	66322680	G	T	66322680	5	4	642	1	0	0	0	0	0	0	1	0	206	1275	44	4	659	4	ACTN3	11	66322680	Splice_Site	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	1348683	66322680	68683836	30	55238										
CTSF	0	genome.wustl.edu	37	chr11	66335472	66335472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	caccagggttttcttggacaCggggagccggcacaccatgg	14	12	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	11	66335472	66335472	C	T	SNP	CTSF	ENST00000310325	human	ensembl	69_37n	-1	known	missense	c.295	p.V99M	0.007	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSF	HGNC	ENSG00000174080	52	0	0	106	22	17.19	-	-	-	T	66335472	C	T	66335472	3	4	642	1	0	0	0	0	1	0	0	0	4066	536	19	1	1207	1	CTSF	11	66335472	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	12792	66335472	68671044	31	55239										
CARNS1	0	genome.wustl.edu	37	chr11	67186344	67186344	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cttccaccctgggggcctgaCattcctggatgactttgtcc	10	14	0	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	11	67186344	67186344	C	A	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	missense	c.482	p.T161K	1.000	NULL	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	78	0	0	55	17	23.61	-	-	-	A	67186344	C	A	67186344	3	1	642	1	0	0	0	0	1	0	0	0	2681	478	17	4	496	4	CARNS1	11	67186344	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	850872	67186344	67820172	32	55240										
GRIA4	0	genome.wustl.edu	37	chr11	105481779	105481779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tttctggattttggggactcGccatgggagcctttccgagc	13	10	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	11	105481779	105481779	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.55	p.A19T	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	248	0	0	138	57	29.08	-	-	-	A	105481779	G	A	105481779	3	1	642	1	0	0	0	0	1	0	0	0	6821	1087	38	1	57	1	GRIA4	11	105481779	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	38295435	105481779	29524737	33	55241										
KRT5	0	genome.wustl.edu	37	chr12	52913583	52913583	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ttgatctgctcgcgctcctcGgtcctcaccctctggatgct	9	16	3	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	12	52913583	52913583	G	T	SNP	KRT5	ENST00000252242	human	ensembl	69_37n	-1	known	silent	c.498	p.T166	0.003	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	668	0	0	367	43	10.46	-	-	-	T	52913583	G	T	52913583	2	4	642	1	0	0	0	0	0	0	0	1	8532	1103	39	3		3	KRT5	12	52913583	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		52913583	80938312	34	55242										
SH2B1	0	genome.wustl.edu	37	chr16	28880551	28880551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cctgccctgctaccagtcccCgccccatgaccctccctctg	6	23	1	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	16	28880551	28880551	C	T	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.1156	p.R386C	0.995	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	212	0	0	125	19	13.19	-	-	-	T	28880551	C	T	28880551	3	4	642	1	0	0	0	0	1	0	0	0	14315	652	23	1	1170	1	SH2B1	16	28880551	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09		28880551	61474202	35	55243										
TP53	0	genome.wustl.edu	37	chr17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-													0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cggttcatgccgcccatgcaGgaactgttacacatgtagtt							TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	274	0	0	66	23	25.84	-	-	-	-	7577558	G	-	7577558	7	5	642	1	0	1	0	1	0	0	0	0	16477	987	35	0	567	0	TP53	17	7577558	Frame_Shift_Del	DEL	G	TCGA-C8-A135-01A-11D-A10Y-09		7577558	73617652	36	55244										
SGK494	0	genome.wustl.edu	37	chr17	26938661	26938661	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	cgggacagaccaaagtctgtCagtttcagatggcctatgaa	11	9	3	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	26938661	26938661	C	T	SNP	SGK494	ENST00000301037	human	ensembl	69_37n	-1	known	silent	c.735	p.L245	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524	260	0	0	117	45	27.61	-	-	-	T	26938661	C	T	26938661	2	4	642	1	0	0	0	0	0	0	0	1	14301	813	29	2		2	SGK494	17	26938661	Silent	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	19361103	26938661	54256549	37	55245										
ERBB2	0	genome.wustl.edu	37	chr17	37880261	37880261	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	aagccaacaaagaaatcttaGacgtaagcccctccaccctc	5	15	1	2			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	37880261	37880261	G	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2305	p.D769H	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	211	0	0	223	261	53.59	-	-	-	C	37880261	G	C	37880261	3	2	642	1	0	0	0	0	1	0	0	0	5243	942	33	2	2379	2	ERBB2	17	37880261	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	10941600	37880261	43314949	38	55246										
COL1A1	0	genome.wustl.edu	37	chr17	48273322	48273322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	agggaagccaggaggaccagCggggccggtgggaccctgtg	20	10	0	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	48273322	48273322	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.1018	p.A340T	0.998	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	61	0	0	89	10	10.1	-	-	-	T	48273322	C	T	48273322	3	4	642	1	0	0	0	0	1	0	0	0	3707	768	27	1	3520	1	COL1A1	17	48273322	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	10393061	48273322	32921888	39	55247										
ABCA5	0	genome.wustl.edu	37	chr17	67283782	67283782	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	atgtcagcttcatccatgaaAtgagtactgaacactgtcac	7	10	3	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	67283782	67283782	A	G	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	silent	c.2013	p.H671	0.975	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	236	0	0	147	18	10.91	-	-	-	G	67283782	A	G	67283782	2	3	642	1	0	0	0	0	0	0	0	1	35	98	4	5		5	ABCA5	17	67283782	Silent	SNP	A	TCGA-C8-A135-01A-11D-A10Y-09	19010460	67283782	13911428	40	55248										
SLC25A19	0	genome.wustl.edu	37	chr17	73274371	73274371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gtagaaaacctgggggccttCgctcctatacatggtcccca	10	13	0	1			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	17	73274371	73274371	C	T	SNP	SLC25A19	ENST00000320362	human	ensembl	69_37n	-1	known	missense	c.505	p.E169K	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A19	HGNC	ENSG00000125454	121	0	0	107	13	10.83	-	-	-	T	73274371	C	T	73274371	3	4	642	1	0	0	0	0	1	0	0	0	14570	893	31	1	469	1	SLC25A19	17	73274371	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09	5990589	73274371	7920839	41	55249										
SPIRE1	0	genome.wustl.edu	37	chr18	12479722	12479722	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	gactcagagctgtccagttcGgccagagttggggctctgag	15	10	2	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	18	12479722	12479722	G	A	SNP	SPIRE1	ENST00000409402	human	ensembl	69_37n	-1	known	silent	c.1380	p.A460	0.881	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE1	HGNC	ENSG00000134278	220	0	0	120	15	11.03	-	-	-	A	12479722	G	A	12479722	2	1	642	1	0	0	0	0	0	0	0	1	15162	1103	39	1		1	SPIRE1	18	12479722	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		12479722	65597526	42	55250										
EIF3G	0	genome.wustl.edu	37	chr19	10229782	10229782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	acctcccggcagtagctctgGctctgggctggtgtcacctg	13	14	3	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	19	10229782	10229782	G	A	SNP	EIF3G	ENST00000253108	human	ensembl	69_37n	-1	known	missense	c.133	p.P45S	0.792	pirsf_Transl_init_eIF-3_G	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_Transl_init_eIF-3_G,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811	185	0	0	61	19	23.46	-	-	-	A	10229782	G	A	10229782	3	1	642	1	0	0	0	0	1	0	0	0	5054	1203	42	4	865	4	EIF3G	19	10229782	Missense_Mutation	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09		10229782	48899201	43	55251										
ZSCAN18	0	genome.wustl.edu	37	chr19	58601320	58601320	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tgtgccaccacccagggccgGaccttatcaggcaggatgcc	12	15	1	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	19	58601320	58601320	G	C	SNP	ZSCAN18	ENST00000433686	human	ensembl	69_37n	-1	known	silent	c.483	p.V161	0.063	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413	126	0	0	56	20	26.32	-	-	-	C	58601320	G	C	58601320	2	2	642	1	0	0	0	0	0	0	0	1	18322	1161	41	2		2	ZSCAN18	19	58601320	Silent	SNP	G	TCGA-C8-A135-01A-11D-A10Y-09	48371538	58601320	527663	44	55252										
CDH4	0	genome.wustl.edu	37	chr20	60419731	60419731	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	tcctgcctttcagatccggtCcgacaaagacaatgacatcc	7	14	1	3			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	20	60419731	60419731	C	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.584	p.S195Y	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	140	0	0	81	19	18.81	-	-	-	A	60419731	C	A	60419731	3	1	642	1	0	0	0	0	1	0	0	0	3141	855	30	2	602	2	CDH4	20	60419731	Missense_Mutation	SNP	C	TCGA-C8-A135-01A-11D-A10Y-09		60419731	2605789	45	55253										
MTMR8	0	genome.wustl.edu	37	chrX	63488918	63488918	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	4	0.871886716160037	1.03812636165577	4.20441176470588	0.318516042780749	0.523809523809524	1	0	ggtggctcatcacggactttTagtttctgcctcaggagcaa	11	10	4	0			TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6b47c22f-8b4e-40fd-9a12-18b539521224	4fef2aff-1a1d-434a-910b-ce94fff48677	X	63488918	63488918	T	C	SNP	MTMR8	ENST00000442913	human	ensembl	69_37n	-1	known	missense	c.1024	p.K342E	0.020	NULL	smart_Tyr_Pase_cat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTMR8	HGNC	ENSG00000102043	51	0	0	41	11	21.15	-	-	-	C	63488918	T	C	63488918	3	2	642	1	0	0	0	0	1	0	0	0	10021	1741	61	5	504	5	MTMR8	23	63488918	Missense_Mutation	SNP	T	TCGA-C8-A135-01A-11D-A10Y-09		63488918	91781642	46	55254										
DIRAS3	0	genome.wustl.edu	37	chr1	68512642	68512642	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ttggtgactgagtagaccagGacgaaggcgtggccccgggc	17	10	0	3			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	1	68512642	68512642	G	A	SNP	DIRAS3	ENST00000370981	human	ensembl	69_37n	-1	known	silent	c.339	p.V113	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS3	HGNC	ENSG00000162595	78	0	0	41	31	43.06	-	-	-	A	68512642	G	A	68512642	2	1	643	1	0	0	0	0	0	0	0	1	4568	1161	41	2		2	DIRAS3	1	68512642	Silent	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		68512642	180737979	1	55255										
C1orf173	0	genome.wustl.edu	37	chr1	75078444	75078444	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	atcccattcaggaaaaaggtGagactgaaggggaaaccatg	12	7	1	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	1	75078444	75078444	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	silent	c.1050	p.L350	1.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	108	0	0	113	68	37.57	-	-	-	A	75078444	G	A	75078444	2	1	643	1	0	0	0	0	0	0	0	1	2033	1277	45	2		2	C1orf173	1	75078444	Silent	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	6565802	75078444	174172177	2	55256										
DCST1	0	genome.wustl.edu	37	chr1	155018634	155018634	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	tgctgccactccgcaaagctGaggagaaaaccgtcatcttc	9	13	2	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	1	155018634	155018634	G	T	SNP	DCST1	ENST00000295542	human	ensembl	69_37n	1	known	nonsense	c.1306	p.E436*	0.814	pfam_DC_STAMP-like	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357	161	0	0	105	65	38.24	-	-	-	T	155018634	G	T	155018634	4	4	643	1	0	0	0	0	0	1	0	0	4333	1291	45	2	1348	2	DCST1	1	155018634	Nonsense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	79940190	155018634	94231987	3	55257										
OTOF	0	genome.wustl.edu	37	chr2	26707384	26707384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	tctcattggccttgtggggcGtcttgatgttgtcccctttg	12	10	2	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	2	26707384	26707384	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.1163	p.T388M	0.997	pfam_FerIin-domain	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	229	0	0	124	54	30.17	-	-	-	A	26707384	G	A	26707384	3	1	643	1	0	0	0	0	1	0	0	0	11376	1145	40	1	5299	1	OTOF	2	26707384	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		26707384	216491989	4	55258										
LHCGR	0	genome.wustl.edu	37	chr2	48915909	48915909	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agcatctggttcaggagcacAtcggggtgtcttgggtaagc	15	8	3	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	2	48915909	48915909	A	T	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.1027	p.C343S	0.999	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	167	0	0	111	79	41.58	-	-	-	T	48915909	A	T	48915909	3	4	643	1	0	0	0	0	1	0	0	0	8817	217	8	5	1076	5	LHCGR	2	48915909	Missense_Mutation	SNP	A	TCGA-C8-A137-01A-11D-A10Y-09	22208525	48915909	194283464	5	55259										
FAHD2A	0	genome.wustl.edu	37	chr2	96076768	96076768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ccttggtgaccaaggacagtGtagcaggtaggtccctggtc	14	10	0	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	2	96076768	96076768	G	A	SNP	FAHD2A	ENST00000233379	human	ensembl	69_37n	1	known	missense	c.679	p.V227I	0.829	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042	243	0	0	140	86	38.05	-	-	-	A	96076768	G	A	96076768	3	1	643	1	0	0	0	0	1	0	0	0	5413	1377	48	4	693	4	FAHD2A	2	96076768	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	47160859	96076768	147122605	6	55260										
BBS5	0	genome.wustl.edu	37	chr2	170343618	170343618	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	tttaagaattctctggcactCtttggcattatcaagagtca	7	8	4	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	2	170343618	170343618	C	T	SNP	BBS5	ENST00000554017	human	ensembl	69_37n	1	known	missense	c.182	p.S61F	1.000	pfam_BBL5,smart_DM16_repeat	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093	102	0	0	152	86	36.13	-	-	-	T	170343618	C	T	170343618	3	4	643	1	0	0	0	0	1	0	0	0	1344	913	32	2	192	2	BBS5	2	170343618	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	74266850	170343618	72855755	7	55261										
PDGFRA	0	genome.wustl.edu	37	chr4	55133783	55133783	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gctgtcaacctgcatgaagtCaaacattttgttgtagaggt	10	7	2	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	4	55133783	55133783	C	G	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	silent	c.996	p.V332	0.146	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	43	0	0	45	24	34.78	-	-	-	G	55133783	C	G	55133783	2	3	643	1	0	0	0	0	0	0	0	1	11734	813	29	2		2	PDGFRA	4	55133783	Silent	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		55133783	136020493	8	55262										
HSPA4L	0	genome.wustl.edu	37	chr4	128751921	128751921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agtctcactcaagatcctgtGgtaaaagtttcagaaatagt	8	7	3	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	4	128751921	128751921	G	A	SNP	HSPA4L	ENST00000439123	human	ensembl	69_37n	1	known	silent	c.2388	p.V796	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070	81	0	0	86	49	36.3	-	-	-	A	128751921	G	A	128751921	2	1	643	1	0	0	0	0	0	0	0	1	7466	1335	47	4		4	HSPA4L	4	128751921	Silent	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	73618138	128751921	62402355	9	55263										
PCDHAC2	0	genome.wustl.edu	37	chr5	140348769	140348769	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ggctcagggagtgacactttCatgttttacaatacaggggc	12	8	2	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	5	140348769	140348769	C	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	missense	c.2418	p.F806L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	65	0	0	55	37	40.22	-	-	-	A	140348769	C	A	140348769	3	1	643	1	0	0	0	0	1	0	0	0	11606	825	29	2	2420	2	PCDHAC2	5	140348769	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		140348769	40566491	10	55264										
TWISTNB	0	genome.wustl.edu	37	chr7	19739894	19739894	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gtggctagaagacactttatTaactataccctgggaagaag	10	7	0	3			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	7	19739894	19739894	T	A	SNP	TWISTNB	ENST00000222567	human	ensembl	69_37n	-1	known	missense	c.406	p.N136Y	1.000	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849	70	0	0	93	33	26.19	-	-	-	A	19739894	T	A	19739894	3	1	643	1	0	0	0	0	1	0	0	0	16881	1754	61	5	618	5	TWISTNB	7	19739894	Missense_Mutation	SNP	T	TCGA-C8-A137-01A-11D-A10Y-09		19739894	139398769	11	55265										
SNX10	0	genome.wustl.edu	37	chr7	26404752	26404752	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agcgtcgccagggtctggaaGatttcctcagaaagtgagtg	14	8	2	3			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	7	26404752	26404752	G	A	SNP	SNX10	ENST00000446848	human	ensembl	69_37n	1	known	missense	c.376	p.D126N	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX10	HGNC	ENSG00000086300	93	0	0	74	54	42.19	-	-	-	A	26404752	G	A	26404752	3	1	643	1	0	0	0	0	1	0	0	0	14970	942	33	2	312	2	SNX10	7	26404752	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	6664858	26404752	132733911	12	55266										
ZNF498	0	genome.wustl.edu	37	chr7	99219167	99219167	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agcagctcagtcaggaccctGgagatgagacacgggccttc	13	12	2	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	7	99219167	99219167	G	T	SNP	ZNF498	ENST00000334715	human	ensembl	69_37n	1	known	nonsense	c.559	p.G187*	0.984	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	68	0	0	85	23	21.3	-	-	-	T	99219167	G	T	99219167	4	4	643	1	0	0	0	0	0	1	0	0	18043	1349	47	4	565	4	ZNF498	7	99219167	Nonsense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	72814415	99219167	59919496	13	55267										
FAM110B	0	genome.wustl.edu	37	chr8	59059479	59059479	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ctgcctcccaagcccaaaatCgcagccatcgcctccatgaa	6	18	0	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	8	59059479	59059479	C	T	SNP	FAM110B	ENST00000361488	human	ensembl	69_37n	1	known	silent	c.690	p.I230	0.507	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122	57	0	0	55	88	61.54	-	-	-	T	59059479	C	T	59059479	2	4	643	1	0	0	0	0	0	0	0	1	5437	874	31	1		1	FAM110B	8	59059479	Silent	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		59059479	87304543	14	55268										
PAX5	0	genome.wustl.edu	37	chr9	37020655	37020655	+	Frame_Shift_Del	DEL	A	A	-													0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gccaagaattttgctgacacAaccatggctgacccgaagct							TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	9	37020655	37020655	A	-	DEL	PAX5	ENST00000358127	human	ensembl	69_37n	-1	known	frame_shift_del	c.190	p.C64fs	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	126	0	0	42	38	46.34	-	-	-	-	37020655	A	-	37020655	7	5	643	1	0	1	0	1	0	0	0	0	11555	130	5	0	1021	0	PAX5	9	37020655	Frame_Shift_Del	DEL	A	TCGA-C8-A137-01A-11D-A10Y-09		37020655	104192776	15	55269										
FRMPD1	0	genome.wustl.edu	37	chr9	37731074	37731074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	acctcctgaaagaagaccccGtggcctttgaatacctctat	7	13	1	4			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	9	37731074	37731074	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.832	p.V278M	0.990	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	94	0	0	40	45	52.94	-	-	-	A	37731074	G	A	37731074	3	1	643	1	0	0	0	0	1	0	0	0	6106	1145	40	1	862	1	FRMPD1	9	37731074	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	710419	37731074	103482357	16	55270										
FPGS	0	genome.wustl.edu	37	chr9	130575737	130575737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ccatcttccagccacctagtCccccaaagggcctcctcacc	5	21	2	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	9	130575737	130575737	C	T	SNP	FPGS	ENST00000373247	human	ensembl	69_37n	1	known	missense	c.1618	p.P540S	0.000	tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877	45	0	0	63	16	20.25	-	-	-	T	130575737	C	T	130575737	3	4	643	1	0	0	0	0	1	0	0	0	6084	855	30	2	1676	2	FPGS	9	130575737	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	92844663	130575737	10637694	17	55271										
KNDC1	0	genome.wustl.edu	37	chr10	135026343	135026343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	aggacttctacggcccctgcGccaagaccagtgagaagggg	14	12	1	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	10	135026343	135026343	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	missense	c.4366	p.A1456T	0.134	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	86	0	0	39	21	35	-	-	-	A	135026343	G	A	135026343	3	1	643	1	0	0	0	0	1	0	0	0	8479	1087	38	1	4454	1	KNDC1	10	135026343	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		135026343	508404	18	55272										
C11orf21	0	genome.wustl.edu	37	chr11	2321978	2321978	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ctcaccagctccagggaggtCaaggttggagagagacaatt	13	9	2	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	11	2321978	2321978	C	G	SNP	C11orf21	ENST00000456145	human	ensembl	69_37n	-1	known	missense	c.127	p.D43H	0.002	NULL	NULL	-	no_errors	C11orf21	HGNC	ENSG00000110665	77	0	0	54	24	30.38	-	-	-	G	2321978	C	G	2321978	3	3	643	1	0	0	0	0	1	0	0	0	1645	826	29	2	421	2	C11orf21	11	2321978	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		2321978	132684538	19	55273										
QSER1	0	genome.wustl.edu	37	chr11	32955061	32955061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ttgaagatcaagttattgggGttgctctgcaagcatcaaaa	10	6	3	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	11	32955061	32955061	G	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.1870	p.V624F	0.917	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	52	0	0	44	24	35.29	-	-	-	T	32955061	G	T	32955061	3	4	643	1	0	0	0	0	1	0	0	0	12965	1261	44	4	1876	4	QSER1	11	32955061	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	30633083	32955061	102051455	20	55274										
OR5I1	0	genome.wustl.edu	37	chr11	55703121	55703121	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	aagaggagagtcccttggtaGatcgtcactgaagtcaggtg	14	7	2	4			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	11	55703121	55703121	G	C	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.756	p.I252M	0.566	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	128	0	0	53	54	50.47	-	-	-	C	55703121	G	C	55703121	3	2	643	1	0	0	0	0	1	0	0	0	11237	932	33	2	191	2	OR5I1	11	55703121	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	22748060	55703121	79303395	21	55275										
KCTD21	0	genome.wustl.edu	37	chr11	77885216	77885216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gctgtagatctggggtgcctCgcgcacagtgaagtggaccg	16	10	1	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	11	77885216	77885216	C	T	SNP	KCTD21	ENST00000340067	human	ensembl	69_37n	-1	known	missense	c.385	p.E129K	0.983	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997	222	0	0	111	116	51.1	-	-	-	T	77885216	C	T	77885216	3	4	643	1	0	0	0	0	1	0	0	0	8163	893	31	1	401	1	KCTD21	11	77885216	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	22182095	77885216	57121300	22	55276										
LAYN	0	genome.wustl.edu	37	chr11	111414717	111414717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ttacttccatgatacttctcGaagactgaactttgaggaag	8	8	1	4			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	11	111414717	111414717	G	A	SNP	LAYN	ENST00000375615	human	ensembl	69_37n	1	known	missense	c.179	p.R60Q	0.997	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381	63	0	0	37	36	48.65	-	-	-	A	111414717	G	A	111414717	3	1	643	1	0	0	0	0	1	0	0	0	8703	1058	37	1	161	1	LAYN	11	111414717	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	33529501	111414717	23591799	23	55277										
SLC2A14	0	genome.wustl.edu	37	chr12	7981305	7981305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gtgaaagatactcactccgcGtagcattctcctcttttttt	6	11	3	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	12	7981305	7981305	G	A	SNP	SLC2A14	ENST00000396589	human	ensembl	69_37n	-1	known	missense	c.740	p.T247M	0.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A14	HGNC	ENSG00000173262	126	0	0	118	71	37.37	-	-	-	A	7981305	G	A	7981305	3	1	643	1	0	0	0	0	1	0	0	0	14632	1145	40	1	846	1	SLC2A14	12	7981305	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		7981305	125870590	24	55278										
TROAP	0	genome.wustl.edu	37	chr12	49724652	49724652	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	aaccaccagcctgatcttctCttcccaacacccgctttgtg	5	17	2	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	12	49724652	49724652	C	G	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	1	known	missense	c.2024	p.S675C	0.994	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	215	0	0	159	80	33.47	-	-	-	G	49724652	C	G	49724652	3	3	643	1	0	0	0	0	1	0	0	0	16671	913	32	2	2172	2	TROAP	12	49724652	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	41743347	49724652	84127243	25	55279										
KRT81	0	genome.wustl.edu	37	chr12	52681912	52681912	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	acggaggtgtctgagatgtgCgactggagaatgaggatctc	16	6	2	3			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	12	52681912	52681912	C	G	SNP	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	silent	c.756	p.S252	0.490	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	229	0	0	124	39	23.78	-	-	-	G	52681912	C	G	52681912	2	3	643	1	0	0	0	0	0	0	0	1	8548	755	27	3		3	KRT81	12	52681912	Silent	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	2957260	52681912	81169983	26	55280										
LTBP2	0	genome.wustl.edu	37	chr14	74970002	74970002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agcattccgtgtaggtggtgCggtgcccacgcaggggttcg	17	10	0	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	14	74970002	74970002	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.4808	p.R1603H	0.001	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	159	0	0	84	54	39.13	-	-	-	T	74970002	C	T	74970002	3	4	643	1	0	0	0	0	1	0	0	0	9140	768	27	1	673	1	LTBP2	14	74970002	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		74970002	32379538	27	55281										
SERPINA6	0	genome.wustl.edu	37	chr14	94770757	94770757	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ctctgggtgggtggtctcttAcactgggttcataaccctcg	12	11	3	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	14	94770757	94770757	A	C	SNP	SERPINA6	ENST00000341584	human	ensembl	69_37n	-1	known	nonstop	c.1216	p.*406E	0.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA6	HGNC	ENSG00000170099	110	0	0	80	50	38.46	-	-	-	C	94770757	A	C	94770757	4	2	643	1	0	0	0	0	0	0	0	0	14181	404	14	5	5	5	SERPINA6	14	94770757	Nonstop_Mutation	SNP	A	TCGA-C8-A137-01A-11D-A10Y-09	19800755	94770757	12578783	28	55282										
COX5A	0	genome.wustl.edu	37	chr15	75221511	75221511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gttgaagtatgttacccagcGagcatcaaactcctcatctg	8	11	3	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	15	75221511	75221511	G	A	SNP	COX5A	ENST00000322347	human	ensembl	69_37n	-1	known	missense	c.163	p.R55C	1.000	pfam_Cyt_c_oxidase_su5A/6,superfamily_Cyt_c_oxidase_su5A/6	pfam_Cyt_c_oxidase_su5A/6,superfamily_Cyt_c_oxidase_su5A/6	-	no_errors	COX5A	HGNC	ENSG00000178741	192	0	0	179	86	32.45	-	-	-	A	75221511	G	A	75221511	3	1	643	1	0	0	0	0	1	0	0	0	3802	1058	37	1	301	1	COX5A	15	75221511	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		75221511	27309881	29	55283										
ZSCAN2	0	genome.wustl.edu	37	chr15	85164365	85164365	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	cagtgtgccgagtgtggcaaGagcttcagcaggagtcccaa	14	10	1	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	15	85164365	85164365	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	silent	c.939	p.K313	0.877	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	72	0	0	65	23	26.14	-	-	-	A	85164365	G	A	85164365	2	1	643	1	0	0	0	0	0	0	0	1	18323	933	33	2		2	ZSCAN2	15	85164365	Silent	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	9942854	85164365	17367027	30	55284										
MRPS11	0	genome.wustl.edu	37	chr15	89020219	89020219	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	aaccactctgcttctctccaGagagctaaacaaaagggcgt	8	12	2	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	15	89020219	89020219	G	A	SNP	MRPS11	ENST00000325844	human	ensembl	69_37n	1	known	splice_site	c.412-1	e5-1	1.000	-	-	-	no_errors	MRPS11	HGNC	ENSG00000181991	143	0	0	104	59	36.2	-	-	-	A	89020219	G	A	89020219	5	1	643	1	0	0	0	0	0	0	1	0	9894	956	33	2	429	2	MRPS11	15	89020219	Splice_Site	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	3855854	89020219	13511173	31	55285										
UQCRC2	0	genome.wustl.edu	37	chr16	21994417	21994417	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gtttctttaaaggcggcaaaGaagtttgtttctggccagaa	11	6	2	2			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	16	21994417	21994417	G	C	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	missense	c.1287	p.K429N	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	68	0	0	85	61	41.5	-	-	-	C	21994417	G	C	21994417	3	2	643	1	0	0	0	0	1	0	0	0	17117	933	33	2	1341	2	UQCRC2	16	21994417	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09		21994417	68360336	32	55286										
ARHGAP17	0	genome.wustl.edu	37	chr16	24942551	24942551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ctgagagctgggagggggcgGagggctggcctggaggctgg	24	7	0	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	16	24942551	24942551	G	A	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.2069	p.S690F	0.003	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	93	0	0	57	41	41.84	-	-	-	A	24942551	G	A	24942551	3	1	643	1	0	0	0	0	1	0	0	0	869	1174	41	2	584	2	ARHGAP17	16	24942551	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	2948134	24942551	65412202	33	55287										
MAZ	0	genome.wustl.edu	37	chr16	29821526	29821526	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	agggggtgcctgtgagctctCagccacttccctcccaaccc	10	17	1	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	16	29821526	29821526	C	T	SNP	MAZ	ENST00000322945	human	ensembl	69_37n	1	known	nonsense	c.1408	p.Q470*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495	16	0	0	15	12	44.44	-	-	-	T	29821526	C	T	29821526	4	4	643	1	0	0	0	0	0	1	0	0	9411	827	29	2	1633	2	MAZ	16	29821526	Nonsense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	4878975	29821526	60533227	34	55288										
ITGAM	0	genome.wustl.edu	37	chr16	31341486	31341486	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ttcggaaggcccccgtggtgGtgagaagctaagtcagcccc	14	12	1	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	16	31341486	31341486	G	T	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	splice_site	c.3063+1	e26+1	1.000	-	-	-	no_errors	ITGAM	HGNC	ENSG00000169896	42	0	0	40	25	38.46	-	-	-	T	31341486	G	T	31341486	5	4	643	1	0	0	0	0	0	0	1	0	7941	1275	44	4	3166	4	ITGAM	16	31341486	Splice_Site	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	1519960	31341486	59013267	35	55289										
CCT6B	0	genome.wustl.edu	37	chr17	33278998	33278998	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gttcctaatttatgcttcatCtccattatttctaccatgaa	3	10	3	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	17	33278998	33278998	C	G	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.585	p.E195D	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	144	0	0	65	81	55.48	-	-	-	G	33278998	C	G	33278998	3	3	643	1	0	0	0	0	1	0	0	0	2987	912	32	2	1047	2	CCT6B	17	33278998	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		33278998	47916212	36	55290										
COASY	0	genome.wustl.edu	37	chr17	40715174	40715174	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	tccacgatcaggccagcttcCcccgtggccgggtctccaaa	10	17	2	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	17	40715174	40715174	C	T	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	silent	c.621	p.S207	0.998	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	61	0	0	8	22	73.33	-	-	-	T	40715174	C	T	40715174	2	4	643	1	0	0	0	0	0	0	0	1	3682	610	22	4		4	COASY	17	40715174	Silent	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09	7436176	40715174	40480036	37	55291										
HGS	0	genome.wustl.edu	37	chr17	79653400	79653400	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	acgacaagaacccacacgtcGccttgtatgccctggaggta	10	13	0	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	17	79653400	79653400	G	T	SNP	HGS	ENST00000329138	human	ensembl	69_37n	1	known	missense	c.181	p.A61S	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_Ubi-bd_Hrs_VPS27,pfscan_VHS	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	137	0	0	114	176	60.69	-	-	-	T	79653400	G	T	79653400	3	4	643	1	0	0	0	0	1	0	0	0	7138	1087	38	3	191	3	HGS	17	79653400	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	38938226	79653400	1541810	38	55292										
MAP3K10	0	genome.wustl.edu	37	chr19	40711935	40711935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gtgagatggacatcgtggaaCgggagctgcacctgctcatg	15	9	1	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	19	40711935	40711935	C	T	SNP	MAP3K10	ENST00000253055	human	ensembl	69_37n	1	known	missense	c.1306	p.R436W	0.999	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758	34	0	0	21	10	31.25	-	-	-	T	40711935	C	T	40711935	3	4	643	1	0	0	0	0	1	0	0	0	9315	527	19	1	1324	1	MAP3K10	19	40711935	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		40711935	18417048	39	55293										
MBOAT7	0	genome.wustl.edu	37	chr19	54691160	54691160	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	gtccaggccagagccagggcGtggcaggagctgggcaaaag	18	10	0	1			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	19	54691160	54691160	G	A	SNP	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	silent	c.216	p.H72	0.994	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	135	0	0	76	65	46.1	-	-	-	A	54691160	G	A	54691160	2	1	643	1	0	0	0	0	0	0	0	1	9429	1136	40	1		1	MBOAT7	19	54691160	Silent	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	13979225	54691160	4437823	40	55294										
TSPAN7	0	genome.wustl.edu	37	chrX	38533518	38533518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ttacacggacgctatgcagaCttacaatggcaatgatgaga	10	8	0	3			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	X	38533518	38533518	C	A	SNP	TSPAN7	ENST00000422612	human	ensembl	69_37n	1	known	missense	c.467	p.T156N	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298	141	0	0	90	50	35.71	-	-	-	A	38533518	C	A	38533518	3	1	643	1	0	0	0	0	1	0	0	0	16748	565	20	4	403	4	TSPAN7	23	38533518	Missense_Mutation	SNP	C	TCGA-C8-A137-01A-11D-A10Y-09		38533518	116737042	41	55295										
P2RY4	0	genome.wustl.edu	37	chrX	69479266	69479266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.285714285714286	12	0.00556723902723078	2.71875	6.02008928571429	1.755859375	1	1	8	ggtggaacatgtaggtggccGttgcatcccagggtcggagg	18	8	0	0			TCGA-C8-A137-01A-11D-A10Y-09	TCGA-C8-A137-10A-02D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	08778f40-d895-46f1-8e7b-122fc598418b	16cfd410-cb75-4177-884e-c3abf7e4aebb	X	69479266	69479266	G	A	SNP	P2RY4	ENST00000374519	human	ensembl	69_37n	-1	known	missense	c.209	p.T70M	0.732	pfam_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY4	HGNC	ENSG00000186912	85	0	0	73	41	35.65	-	-	-	A	69479266	G	A	69479266	3	1	643	1	0	0	0	0	1	0	0	0	11426	1145	40	1	892	1	P2RY4	23	69479266	Missense_Mutation	SNP	G	TCGA-C8-A137-01A-11D-A10Y-09	30945748	69479266	85791294	42	55296										
UBXN11	0	genome.wustl.edu	37	chr1	26608890	26608891	+	Frame_Shift_Del	DEL	CC	CC	-													0	0	1	0	0	0	1	1	0	gactggggccgggaccgggaCcgggacagggaccaggactg							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	26608890	26608891	CC	-	DEL	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	frame_shift_del	c.1463_1462	p.G488fs	0.001:0.001	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	8	0	0	8	4	30.77	-	-	-	-	26608891	CC	-	26608890	7	5	644	1	0	1	0	1	0	0	0	0	17010	507	18	0	103	0	UBXN11	1	26608890	Frame_Shift_Del	DEL	CC	TCGA-C8-A138-01A-11D-A10Y-09		26608890	222641731	1	55297										
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc	17	11	0	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	8	0	0	22	8	26.67	-	-	-	T	154842244	A	T	154842244	3	4	644	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-C8-A138-01A-11D-A10Y-09	128233354	154842244	94408377	2	55298										
TDRD5	0	genome.wustl.edu	37	chr1	179604942	179604942	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggtctttgtggagtatatCatctctcctagtcaattcta	9	8	5	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	179604942	179604942	C	A	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	silent	c.1440	p.I480	0.721	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	153	0	0	58	8	12.12	-	-	-	A	179604942	C	A	179604942	2	1	644	1	0	0	0	0	0	0	0	1	15828	816	29	2		2	TDRD5	1	179604942	Silent	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	24762698	179604942	69645679	3	55299										
EPRS	0	genome.wustl.edu	37	chr1	220152916	220152916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttcaaaaacgatttcaaaCattttggaaaaattctgccc	4	9	4	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	220152916	220152916	C	T	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.3753	p.M1251I	1.000	pfscan_aa-tRNA-synth_II,tigrfam_Pro-tRNA-synth_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	287	0	0	99	14	12.39	-	-	-	T	220152916	C	T	220152916	3	4	644	1	0	0	0	0	1	0	0	0	5228	478	17	4	809	4	EPRS	1	220152916	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	40547974	220152916	29097705	4	55300										
ZNF695	0	genome.wustl.edu	37	chr1	247151327	247151327	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttgcaaatttactaaaacCtttcacacatttattgcatt	2	8	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	247151327	247151327	C	A	SNP	ZNF695	ENST00000339986	human	ensembl	69_37n	-1	known	missense	c.490	p.G164C	0.563	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	188	0	0	113	13	10.32	-	-	-	A	247151327	C	A	247151327	3	1	644	1	0	0	0	0	1	0	0	0	18194	681	24	4	1061	4	ZNF695	1	247151327	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	26998411	247151327	2099294	5	55301										
NEB	0	genome.wustl.edu	37	chr2	152410473	152410473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaatccttggcagtaaccaTctctaccatgtcgggcacga	10	12	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	152410473	152410473	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.19495	p.M6499V	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	174	0	0	66	29	30.53	-	-	-	C	152410473	T	C	152410473	3	2	644	1	0	0	0	0	1	0	0	0	10374	1435	50	5	6419	5	NEB	2	152410473	Missense_Mutation	SNP	T	TCGA-C8-A138-01A-11D-A10Y-09		152410473	90788900	6	55302										
ALS2CR11	0	genome.wustl.edu	37	chr2	202356525	202356525	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttcacaccaagcttttgaTtgagttatttttgatttacc	5	7	1	3			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	202356525	202356525	T	C	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	silent	c.4539	p.Q1513	0.018	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	289	0	0	84	41	32.8	-	-	-	C	202356525	T	C	202356525	2	2	644	1	0	0	0	0	0	0	0	1	552	1490	52	5		5	ALS2CR11	2	202356525	Silent	SNP	T	TCGA-C8-A138-01A-11D-A10Y-09	49946052	202356525	40842848	7	55303										
ZDBF2	0	genome.wustl.edu	37	chr2	207174608	207174608	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acttgaaagaaaagaaccatGattcccagtcaagctctgtt	7	9	2	4			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	207174608	207174608	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.5356	p.D1786Y	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	68	0	0	32	21	39.62	-	-	-	T	207174608	G	T	207174608	3	4	644	1	0	0	0	0	1	0	0	0	17695	1290	45	2	5366	2	ZDBF2	2	207174608	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	4818083	207174608	36024765	8	55304										
SP100	0	genome.wustl.edu	37	chr2	231334496	231334496	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	tacatatttttcccaaagttAaaaaaaaaaaagaagaagaa							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	231334496	231334496	A	-	DEL	SP100	ENST00000341950	human	ensembl	69_37n	1	known	frame_shift_del	c.1350	p.K453fs	0.007	NULL	pfam_Sp100	-	no_errors	SP100	HGNC	ENSG00000067066	28	0	0	4	2	33.33	-	-	-	-	231334496	A	-	231334496	7	5	644	1	0	1	0	1	0	0	0	0	15049	377	13	0		0	SP100	2	231334496	Frame_Shift_Del	DEL	A	TCGA-C8-A138-01A-11D-A10Y-09	24159888	231334496	11864877	9	55305										
RARB	0	genome.wustl.edu	37	chr3	25542765	25542765	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagtcaccaggaatcgatgCcaatactgtcgactccagaa	8	11	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	25542765	25542765	C	A	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	nonsense	c.420	p.C140*	1.000	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	200	0	0	64	16	19.75	-	-	-	A	25542765	C	A	25542765	4	1	644	1	0	0	0	0	0	1	0	0	13136	747	26	4	409	4	RARB	3	25542765	Nonsense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		25542765	172479665	10	55306										
STAB1	0	genome.wustl.edu	37	chr3	52552806	52552806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccacgtggttggctgtcggcGgctgcggagcgaggacctgc	18	12	0	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	52552806	52552806	G	A	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.4955	p.R1652Q	0.957	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	22	0	0	13	7	35	-	-	-	A	52552806	G	A	52552806	3	1	644	1	0	0	0	0	1	0	0	0	15328	1116	39	1	5145	1	STAB1	3	52552806	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	27010041	52552806	145469624	11	55307										
SLMAP	0	genome.wustl.edu	37	chr3	57908744	57908745	+	In_Frame_Ins	INS	-	-	AAT													0	0	1	0	0	0	1	1	0	agctgctccgagagaaaggaINSaataatgtaagtctttgcaa							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	57908744	57908745	-	AAT	INS	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	in_frame_ins	c.2388_2389	p.798in_frame_insN	1.000:1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	83	0	0	33	4	10.81	-	-	-	AAT	57908745	-	AAT	57908744	7	5	644	1	0	1	1	0	0	0	0	0	14838	233	9	0	2415	0	SLMAP	3	57908744	In_Frame_Ins	INS	-	TCGA-C8-A138-01A-11D-A10Y-09	5355938	57908744	140113686	12	55308										
LSG1	0	genome.wustl.edu	37	chr3	194387183	194387183	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	aattcttcttcagctcacctCctcggtatacacaagaactg	5	13	4	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	194387183	194387183	C	T	SNP	LSG1	ENST00000265245	human	ensembl	69_37n	-1	known	silent	c.345	p.R115	0.879	NULL	pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802	248	0	0	57	8	12.31	-	-	-	T	194387183	C	T	194387183	2	4	644	1	0	0	0	0	0	0	0	1	9115	854	30	2		2	LSG1	3	194387183	Silent	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	136478439	194387183	3635247	13	55309										
C4orf50	0	genome.wustl.edu	37	chr4	5977632	5977632	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tatgaacatattaccttcagGggagtcactgccaactttgc	8	10	2	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	5977632	5977632	G	A	SNP	C4orf50	ENST00000531445	human	ensembl	69_37n	-1	known	silent	c.1641	p.P547	0.496	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	227	0	0	50	21	29.58	-	-	-	A	5977632	G	A	5977632	2	1	644	1	0	0	0	0	0	0	0	1	2297	1219	43	4		4	C4orf50	4	5977632	Silent	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		5977632	185176644	14	55310										
LNX1	0	genome.wustl.edu	37	chr4	54362438	54362438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgtaggcatccggggcctGtccattgttcctgctgcgga	13	12	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	54362438	54362438	G	T	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.1102	p.Q368K	0.030	NULL	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	33	0	0	29	28	49.12	-	-	-	T	54362438	G	T	54362438	3	4	644	1	0	0	0	0	1	0	0	0	8921	1386	48	4	1108	4	LNX1	4	54362438	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	48384806	54362438	136791838	15	55311										
LRBA	0	genome.wustl.edu	37	chr4	151793884	151793884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccctgattccttcacttttcGatgccagaagtttgtagata	7	10	1	3			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	151793884	151793884	G	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.2189	p.S730L	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	155	0	0	17	14	45.16	-	-	-	A	151793884	G	A	151793884	3	1	644	1	0	0	0	0	1	0	0	0	8997	1059	37	1	6566	1	LRBA	4	151793884	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	97431446	151793884	39360392	16	55312										
HEATR7B2	0	genome.wustl.edu	37	chr5	41004585	41004585	+	Missense_Mutation	SNP	G	G	T													0	0	1	0	0	0	1	1	0	agtgcgagctaggtgatacaGgcctctgatgatagattcta							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	5	41004585	41004585	G	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.4057	p.L1353M	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	292	0	0	73	12	14.12	-	-	-	T	41004585	G	T	41004585	3	4	644	1	0	0	0	0	1	0	0	0	7086	991	35	4	724	4	HEATR7B2	5	41004585	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		41004585	139910675	17	55313	436	2								
HEATR7B2	0	genome.wustl.edu	37	chr5	41004586	41004586	+	Silent	SNP	G	G	T													0	0	1	0	0	0	1	1	0	gtgcgagctaggtgatacagGcctctgatgatagattctag							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	5	41004586	41004586	G	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.4056	p.G1352	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	293	0	0	73	12	14.12	-	-	-	T	41004586	G	T	41004586	2	4	644	1	0	0	0	0	0	0	0	1	7086	1190	42	4		4	HEATR7B2	5	41004586	Silent	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	1	41004586	139910674	18	55314	436	2								
RREB1	0	genome.wustl.edu	37	chr6	7211836	7211836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	acgggcagtcaggtgacttgGagaagaaagctgatgaagtc	15	6	1	5			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	7211836	7211836	G	A	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	missense	c.601	p.E201K	0.498	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	149	1	0.67	46	24	34.29	-	-	-	A	7211836	G	A	7211836	3	1	644	1	0	0	0	0	1	0	0	0	13765	1175	41	2	619	2	RREB1	6	7211836	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		7211836	163903231	19	55315										
REV3L	0	genome.wustl.edu	37	chr6	111696389	111696389	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgttgtttaccagttttttTcttagcagatttatgttttg	7	4	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	111696389	111696389	T	C	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.3169	p.K1057E	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	352	0	0	88	37	29.6	-	-	-	C	111696389	T	C	111696389	3	2	644	1	0	0	0	0	1	0	0	0	13323	1792	62	5	6303	5	REV3L	6	111696389	Missense_Mutation	SNP	T	TCGA-C8-A138-01A-11D-A10Y-09	104484553	111696389	59418678	20	55316										
SLC22A3	0	genome.wustl.edu	37	chr6	160864753	160864753	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggctagcagccgtgtggctaGaactacctctgatcatcttt	10	11	3	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	160864753	160864753	G	T	SNP	SLC22A3	ENST00000392145	human	ensembl	69_37n	1	known	nonsense	c.1492	p.E498*	0.999	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477	261	0	0	55	33	37.5	-	-	-	T	160864753	G	T	160864753	4	4	644	1	0	0	0	0	0	1	0	0	14544	943	33	2	1523	2	SLC22A3	6	160864753	Nonsense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	49168364	160864753	10250314	21	55317										
CTTNBP2	0	genome.wustl.edu	37	chr7	117431308	117431308	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actgtctgaacatgcaggttGgttcagtccgggggttgcag	15	8	2	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	7	117431308	117431308	G	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.1942	p.Q648K	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	68	0	0	51	16	23.88	-	-	-	T	117431308	G	T	117431308	3	4	644	1	0	0	0	0	1	0	0	0	4077	1357	47	4	3129	4	CTTNBP2	7	117431308	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		117431308	41707355	22	55318										
CCDC136	0	genome.wustl.edu	37	chr7	128444776	128444776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggccctgcaggagagcaacaGcagcctcacggggcagcttg	15	13	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	7	128444776	128444776	G	A	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.743	p.S248N	1.000	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	45	0	0	28	8	22.22	-	-	-	A	128444776	G	A	128444776	3	1	644	1	0	0	0	0	1	0	0	0	2795	971	34	4	761	4	CCDC136	7	128444776	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	11013468	128444776	30693887	23	55319										
FASTK	0	genome.wustl.edu	37	chr7	150774052	150774052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	gccgctccctcagggccctcGagcccagcagcacccggccg	12	21	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	7	150774052	150774052	G	C	SNP	FASTK	ENST00000297532	human	ensembl	69_37n	-1	known	missense	c.1490	p.S497W	0.996	pfam_RAP,smart_RAP	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896	16	0	0	22	5	18.52	-	-	-	C	150774052	G	C	150774052	3	2	644	1	0	0	0	0	1	0	0	0	5730	1059	37	3	167	3	FASTK	7	150774052	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	22329276	150774052	8364611	24	55320										
TEX15	0	genome.wustl.edu	37	chr8	30700783	30700783	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcacatttattcactctgagTagcctttcttcgtccttctt	5	12	4	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	8	30700783	30700783	T	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.5751	p.L1917	0.002	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	332	0	0	53	49	48.04	-	-	-	C	30700783	T	C	30700783	2	2	644	1	0	0	0	0	0	0	0	1	15874	1625	57	5		5	TEX15	8	30700783	Silent	SNP	T	TCGA-C8-A138-01A-11D-A10Y-09		30700783	115663239	25	55321										
C9orf3	0	genome.wustl.edu	37	chr9	97522324	97522324	+	Missense_Mutation	SNP	G	G	T													0	0	1	0	0	0	1	1	0	gccatattcccgtgacaaatGcaaggaccttctcatctgaa							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	9	97522324	97522324	G	T	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.259	p.A87S	0.368	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	79	0	0	39	23	37.1	-	-	-	T	97522324	G	T	97522324	3	4	644	1	0	0	0	0	1	0	0	0	2502	1319	46	4	261	4	C9orf3	9	97522324	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		97522324	43691107	26	55322	437	2								
C9orf3	0	genome.wustl.edu	37	chr9	97522325	97522325	+	Missense_Mutation	SNP	C	C	T													0	0	1	0	0	0	1	1	0	ccatattcccgtgacaaatgCaaggaccttctcatctgaaa							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	9	97522325	97522325	C	T	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.260	p.A87V	0.861	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	77	0	0	38	22	36.07	-	-	-	T	97522325	C	T	97522325	3	4	644	1	0	0	0	0	1	0	0	0	2502	710	25	4	262	4	C9orf3	9	97522325	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	1	97522325	43691106	27	55323	437	2								
NTNG2	0	genome.wustl.edu	37	chr9	135073714	135073714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcatcctccagcgcgcaccGcgtgctctgcaccgaggagt	12	16	2	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	9	135073714	135073714	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	69_37n	1	known	missense	c.575	p.R192H	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	9	0	0	11	4	26.67	-	-	-	A	135073714	G	A	135073714	3	1	644	1	0	0	0	0	1	0	0	0	10778	1087	38	1	581	1	NTNG2	9	135073714	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	37551389	135073714	6139717	28	55324										
GATA3	0	genome.wustl.edu	37	chr10	8115979	8115980	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	tccagcatggtcaccgccatINSgggttagagccctgctcgat							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	10	8115979	8115980	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1328_1329	p.*445fs	1.000:1.000	NULL	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	21	0	0	37	5	11.9	-	-	-	G	8115980	-	G	8115979	7	5	644	1	0	1	1	0	0	0	0	0	6305	1464	51	0	1346	0	GATA3	10	8115979	Frame_Shift_Ins	INS	-	TCGA-C8-A138-01A-11D-A10Y-09		8115979	127418768	29	55325										
BRMS1	0	genome.wustl.edu	37	chr11	66105190	66105190	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gaggagggcagaggaggagtCcaggccagtgccagatggag	20	7	0	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	66105190	66105190	C	T	SNP	BRMS1	ENST00000425825	human	ensembl	69_37n	-1	known	nonsense	c.822	p.W274*	0.009	NULL	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744	28	0	0	36	6	14.29	-	-	-	T	66105190	C	T	66105190	4	4	644	1	0	0	0	0	0	1	0	0	1524	856	30	2	54	2	BRMS1	11	66105190	Nonsense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		66105190	68901326	30	55326										
PC	0	genome.wustl.edu	37	chr11	66631396	66631396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggcggaagcattatccaggCggatgcccatgccctctccg	12	14	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	66631396	66631396	C	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.1217	p.R406H	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	75	0	0	92	39	29.55	-	-	-	T	66631396	C	T	66631396	3	4	644	1	0	0	0	0	1	0	0	0	11570	768	27	1	2367	1	PC	11	66631396	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	526206	66631396	68375120	31	55327										
SHANK2	0	genome.wustl.edu	37	chr11	70333654	70333654	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcttaatcgtcccgtagactCttggagttggggacttgggg	15	8	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	70333654	70333654	C	A	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.2747	p.R916I	0.898	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	104	0	0	121	50	29.07	-	-	-	A	70333654	C	A	70333654	3	1	644	1	0	0	0	0	1	0	0	0	14354	913	32	2	2813	2	SHANK2	11	70333654	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	3702258	70333654	64672862	32	55328										
ACER3	0	genome.wustl.edu	37	chr11	76696702	76696702	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcaaggtttgaatgtttcaaGatcaagaactcagtaaacta	7	6	4	3			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	76696702	76696702	G	T	SNP	ACER3	ENST00000532485	human	ensembl	69_37n	1	known	missense	c.336	p.K112N	0.928	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER3	HGNC	ENSG00000078124	319	0	0	14	27	65.85	-	-	-	T	76696702	G	T	76696702	3	4	644	1	0	0	0	0	1	0	0	0	140	933	33	2	354	2	ACER3	11	76696702	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	6363048	76696702	58309814	33	55329										
PCBP2	0	genome.wustl.edu	37	chr12	53849274	53849274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcagttaagaagatgcgcgaGgaggtaagttatgaaagact	13	4	1	4			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	12	53849274	53849274	G	A	SNP	PCBP2	ENST00000562264	human	ensembl	69_37n	1	novel	missense	c.64	p.G22R	0.980	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PCBP2	HGNC	ENSG00000197111	272	0	0	67	32	32.32	-	-	-	A	53849274	G	A	53849274	3	1	644	1	0	0	0	0	1	0	0	0	11574	991	35	4	133	4	PCBP2	12	53849274	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		53849274	80002621	34	55330										
MTHFD1	0	genome.wustl.edu	37	chr14	64898264	64898264	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtagtttaatctccacctCacaggtgacatccatgccat	6	12	2	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	14	64898264	64898264	C	A	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	silent	c.1494	p.L498	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	135	0	0	56	20	26.32	-	-	-	A	64898264	C	A	64898264	2	1	644	1	0	0	0	0	0	0	0	1	9999	813	29	2		2	MTHFD1	14	64898264	Silent	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		64898264	42451276	35	55331										
CPEB1	0	genome.wustl.edu	37	chr15	83224732	83224732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctggccatctctttgaagcActggttggggagggagtgac	15	9	1	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	15	83224732	83224732	A	C	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	missense	c.747	p.S249R	0.111	NULL	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	30	0	0	29	6	17.14	-	-	-	C	83224732	A	C	83224732	3	2	644	1	0	0	0	0	1	0	0	0	3830	156	6	5	985	5	CPEB1	15	83224732	Missense_Mutation	SNP	A	TCGA-C8-A138-01A-11D-A10Y-09		83224732	19306660	36	55332										
PARD6A	0	genome.wustl.edu	37	chr16	67695950	67695950	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggtttcctcagtcatagaCgtggacctactgcctgagac	10	12	2	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	16	67695950	67695950	C	T	SNP	PARD6A	ENST00000219255	human	ensembl	69_37n	1	known	silent	c.441	p.D147	0.998	superfamily_PDZ	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6A	HGNC	ENSG00000102981	87	0	0	45	10	18.18	-	-	-	T	67695950	C	T	67695950	2	4	644	1	0	0	0	0	0	0	0	1	11518	535	19	1		1	PARD6A	16	67695950	Silent	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		67695950	22658803	37	55333										
NXN	0	genome.wustl.edu	37	chr17	722712	722712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagccggttgaggcgcgaccGccgggcctcatccgtgtagg	16	14	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	722712	722712	G	T	SNP	NXN	ENST00000571684	human	ensembl	69_37n	-1	putative	missense	c.350	p.A117E	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NXN	HGNC	ENSG00000167693	40	0	0	20	24	54.55	-	-	-	T	722712	G	T	722712	3	4	644	1	0	0	0	0	1	0	0	0	10860	1086	38	3	536	3	NXN	17	722712	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		722712	80472498	38	55334										
TP53	0	genome.wustl.edu	37	chr17	7576924	7576925	+	Frame_Shift_Del	DEL	GT	GT	-													0	0	1	0	0	0	1	1	0	ggagctggtgttgttgggcaGtgctaggaaagaggcaagga							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	7576924	7576925	GT	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.922_921	p.L308fs	0.955:0.952	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	139	0	0	58	66	51.97	-	-	-	-	7576925	GT	-	7576924	7	5	644	1	0	1	0	1	0	0	0	0	16477	1020	36	0	360	0	TP53	17	7576924	Frame_Shift_Del	DEL	GT	TCGA-C8-A138-01A-11D-A10Y-09	6854212	7576924	73618286	39	55335										
ANKFN1	0	genome.wustl.edu	37	chr17	54431265	54431265	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	atggatgctgtgcagatcctCctgtatcagtacacaccaga	9	11	1	2			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	54431265	54431265	C	T	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	silent	c.468	p.L156	0.988	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	89	0	0	52	23	30.67	-	-	-	T	54431265	C	T	54431265	2	4	644	1	0	0	0	0	0	0	0	1	625	842	30	2		2	ANKFN1	17	54431265	Silent	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	46854341	54431265	26763945	40	55336										
PTPRM	0	genome.wustl.edu	37	chr18	8376551	8376551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgtagacatctacaactgcGtcagggagctgcggtcacgg	13	11	3	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	18	8376551	8376551	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.3421	p.V1141I	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	76	0	0	44	21	32.31	-	-	-	A	8376551	G	A	8376551	3	1	644	1	0	0	0	0	1	0	0	0	12889	1145	40	1	3520	1	PTPRM	18	8376551	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		8376551	69700697	41	55337										
IRGC	0	genome.wustl.edu	37	chr19	44222997	44222997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catggagaccacgatgcaacCgtcgccctatccacacccac	7	18	0	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	44222997	44222997	C	T	SNP	IRGC	ENST00000244314	human	ensembl	69_37n	1	known	missense	c.287	p.P96L	0.002	pfam_Interferon-induced_GTPase	pfam_Interferon-induced_GTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	17	0	0	10	4	28.57	-	-	-	T	44222997	C	T	44222997	3	4	644	1	0	0	0	0	1	0	0	0	7892	652	23	1	289	1	IRGC	19	44222997	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		44222997	14905986	42	55338										
MYH14	0	genome.wustl.edu	37	chr19	50771580	50771580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgaggaggaggagtgcagcCgtcaaatgcaaaccgagaag	16	8	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	50771580	50771580	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.2989	p.R997C	0.989	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	44	0	0	35	11	23.91	-	-	-	T	50771580	C	T	50771580	3	4	644	1	0	0	0	0	1	0	0	0	10105	652	23	1	3079	1	MYH14	19	50771580	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09	6548583	50771580	8357403	43	55339										
LIM2	0	genome.wustl.edu	37	chr19	51890496	51890496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgctctttccccaggcgcGgcctggaccctggccggggg	15	17	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	51890496	51890496	G	A	SNP	LIM2	ENST00000221973	human	ensembl	69_37n	-1	known	missense	c.202	p.R68C	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_LMIP,prints_PMP22_EMP_MP20	-	no_errors	LIM2	HGNC	ENSG00000105370	19	0	0	18	6	25	-	-	-	A	51890496	G	A	51890496	3	1	644	1	0	0	0	0	1	0	0	0	8850	1116	39	1	461	1	LIM2	19	51890496	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09	1118916	51890496	7238487	44	55340										
ZNFX1	0	genome.wustl.edu	37	chr20	47865218	47865218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cttcgaagcagctgtggcagGagcctgggcaaggatgcccg	16	11	0	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	20	47865218	47865218	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	missense	c.4343	p.S1448F	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	33	0	0	84	21	20	-	-	-	A	47865218	G	A	47865218	3	1	644	1	0	0	0	0	1	0	0	0	18298	1174	41	2	1417	2	ZNFX1	20	47865218	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		47865218	15160302	45	55341										
TRAPPC10	0	genome.wustl.edu	37	chr21	45475668	45475668	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	caaactcaggacattgcttcTtatgtcttttaccaaaaacc							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	21	45475668	45475668	T	-	DEL	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	frame_shift_del	c.572	p.M192fs	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	189	0	0	91	16	14.68	-	-	-	-	45475668	T	-	45475668	7	5	644	1	0	1	0	1	0	0	0	0	16553	1609	56	0	590	0	TRAPPC10	21	45475668	Frame_Shift_Del	DEL	T	TCGA-C8-A138-01A-11D-A10Y-09		45475668	2654227	46	55342										
SHANK3	0	genome.wustl.edu	37	chr22	51143180	51143180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccgcagcagagacccccatcGaggagttcacgcccacgcca	10	18	1	1			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	22	51143180	51143180	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	69_37n	1	known	missense	c.1834	p.E612K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	41	0	0	27	8	22.86	-	-	-	A	51143180	G	A	51143180	3	1	644	1	0	0	0	0	1	0	0	0	14355	1059	37	1	1896	1	SHANK3	22	51143180	Missense_Mutation	SNP	G	TCGA-C8-A138-01A-11D-A10Y-09		51143180	161386	47	55343										
GPM6B	0	genome.wustl.edu	37	chrX	13834993	13834993	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ttggctttgttcagtattttCctcggctgcagtttccatgg	10	9	1	0			TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	X	13834993	13834993	C	G	SNP	GPM6B	ENST00000316715	human	ensembl	69_37n	-1	known	missense	c.31	p.E11Q	1.000	NULL	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653	334	0	0	183	56	23.43	-	-	-	G	13834993	C	G	13834993	3	3	644	1	0	0	0	0	1	0	0	0	6666	864	30	2	1072	2	GPM6B	23	13834993	Missense_Mutation	SNP	C	TCGA-C8-A138-01A-11D-A10Y-09		13834993	141435567	48	55344										
WDR13	0	genome.wustl.edu	37	chrX	48457035	48457035	+	RNA	DEL	C	C	-													0	0	1	0	0	0	1	1	0	cacctcactctcctgccgtaCccccccccccgagctgattg							TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	X	48457035	48457035	C	-	DEL	WDR13	ENST00000479279	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940	12	0	0	6	4	40	-	-	-	-	48457035	C	-	48457035	6	5	644	0	1	1	0	1	0	0	0	0	17372	522	18	0		0	WDR13	23	48457035	RNA	DEL	C	TCGA-C8-A138-01A-11D-A10Y-09	34622042	48457035	106813525	49	55345										
BIRC6	0	genome.wustl.edu	37	chr2	32824940	32824940	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ggtggtcatagcgtgcgattCaatccaaacctttataatga	9	8	2	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	32824940	32824940	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	silent	c.13965	p.F4655	1.000	pfam_UBQ-conjugat_E2,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	82	0	0	41	21	33.87	-	-	-	T	32824940	C	T	32824940	2	4	645	1	0	0	0	0	0	0	0	1	1443	825	29	2		2	BIRC6	2	32824940	Silent	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		32824940	210374433	1	55346										
ZFAND2B	0	genome.wustl.edu	37	chr2	220073995	220073995	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ttgctctaggcccagagccgCagctcgaagccgtccaactg	11	15	1	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	220073995	220073995	C	T	SNP	ZFAND2B	ENST00000425849	human	ensembl	69_37n	1	putative	nonsense	c.109	p.Q37*	0.997	NULL	pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFAND2B	HGNC	ENSG00000158552	38	0	0	27	7	20.59	-	-	-	T	220073995	C	T	220073995	4	4	645	1	0	0	0	0	0	1	0	0	17724	697	25	4	775	4	ZFAND2B	2	220073995	Nonsense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09	187249055	220073995	23125378	2	55347										
CUL3	0	genome.wustl.edu	37	chr2	225362533	225362533	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	cccatatgatgctggagtgtGagctgtcgaccactgtgttt	12	9	0	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	225362533	225362533	G	A	SNP	CUL3	ENST00000451538	human	ensembl	69_37n	-1	novel	missense	c.4	p.H2Y	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_neddylation_domain,pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CUL3	HGNC	ENSG00000036257	96	0	0	71	11	13.41	-	-	-	A	225362533	G	A	225362533	3	1	645	1	0	0	0	0	1	0	0	0	4087	1277	45	2	682	2	CUL3	2	225362533	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	5288538	225362533	17836840	3	55348										
HJURP	0	genome.wustl.edu	37	chr2	234749835	234749835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ctgcgggcgagttgcgctgtGtgtggggttggtctttggaa	19	6	1	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	234749835	234749835	G	A	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.1591	p.H531Y	0.000	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	113	0	0	36	25	40.98	-	-	-	A	234749835	G	A	234749835	3	1	645	1	0	0	0	0	1	0	0	0	7240	1377	48	4	663	4	HJURP	2	234749835	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	9387302	234749835	8449538	4	55349										
MLH1	0	genome.wustl.edu	37	chr3	37089169	37089169	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	actatttctctttggaaattGatgaggtgtgacagccattc	9	7	1	3			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	3	37089169	37089169	G	C	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	missense	c.1891	p.D631H	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	66	0	0	51	6	10.53	-	-	-	C	37089169	G	C	37089169	3	2	645	1	0	0	0	0	1	0	0	0	9688	1290	45	2	1953	2	MLH1	3	37089169	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		37089169	160933261	5	55350										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	27	0	0	22	25	53.19	-	-	-	G	178952085	A	G	178952085	3	3	645	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A1HE-01A-11D-A188-09	141862916	178952085	19070345	6	55351										
PDS5A	0	genome.wustl.edu	37	chr4	39846302	39846302	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	cgatttccggttgaagggttCagctctgaatttacattaat	9	7	2	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	4	39846302	39846302	C	T	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	silent	c.3522	p.L1174	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	112	0	0	62	23	27.06	-	-	-	T	39846302	C	T	39846302	2	4	645	1	0	0	0	0	0	0	0	1	11764	813	29	2		2	PDS5A	4	39846302	Silent	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		39846302	151307974	7	55352										
STOX2	0	genome.wustl.edu	37	chr4	184922544	184922544	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tattccactcggggagatccTctgcttggccatctcagcaa	9	13	2	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	4	184922544	184922544	T	A	SNP	STOX2	ENST00000308497	human	ensembl	69_37n	1	known	missense	c.233	p.L78H	1.000	pfam_Storkhead-box_winged-helix	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320	35	0	0	7	22	75.86	-	-	-	A	184922544	T	A	184922544	3	1	645	1	0	0	0	0	1	0	0	0	15411	1551	54	5	239	5	STOX2	4	184922544	Missense_Mutation	SNP	T	TCGA-C8-A1HE-01A-11D-A188-09	145076242	184922544	6231732	8	55353										
ODZ2	0	genome.wustl.edu	37	chr5	167673880	167673880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	cagcatgtccacacacacctCcatcggctacatccgtaata	5	16	0	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	5	167673880	167673880	C	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.5936	p.S1979F	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	42	0	0	20	15	42.86	-	-	-	T	167673880	C	T	167673880	3	4	645	1	0	0	0	0	1	0	0	0	10908	855	30	2	6015	2	ODZ2	5	167673880	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		167673880	13241380	9	55354										
EFHC1	0	genome.wustl.edu	37	chr6	52329847	52329847	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	actcgacggtattacaaagaGaagtttggaatcactgattt	9	6	1	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	52329847	52329847	G	C	SNP	EFHC1	ENST00000371068	human	ensembl	69_37n	1	known	missense	c.1071	p.E357D	0.839	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_HAND_2	-	no_errors	EFHC1	HGNC	ENSG00000096093	60	0	0	29	18	38.3	-	-	-	C	52329847	G	C	52329847	3	2	645	1	0	0	0	0	1	0	0	0	4981	933	33	2	1103	2	EFHC1	6	52329847	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		52329847	118785220	10	55355										
TSPYL1	0	genome.wustl.edu	37	chr6	116600543	116600543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tgtcttcacctcctccgcctCagcctccgcccccgccgtca	6	23	4	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	116600543	116600543	C	T	SNP	TSPYL1	ENST00000368608	human	ensembl	69_37n	-1	known	missense	c.451	p.E151K	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241	17	0	0	12	9	42.86	-	-	-	T	116600543	C	T	116600543	3	4	645	1	0	0	0	0	1	0	0	0	16755	835	29	2	866	2	TSPYL1	6	116600543	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09	64270696	116600543	54514524	11	55356										
EZR	0	genome.wustl.edu	37	chr6	159197489	159197489	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	caaactttttgtcattgaaaGagatgttcctgatttcactc	6	8	2	3			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	159197489	159197489	G	A	SNP	EZR	ENST00000337147	human	ensembl	69_37n	-1	known	missense	c.746	p.S249F	1.000	pirsf_ERM,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	EZR	HGNC	ENSG00000092820	75	0	0	38	25	39.68	-	-	-	A	159197489	G	A	159197489	3	1	645	1	0	0	0	0	1	0	0	0	5372	942	33	2	1042	2	EZR	6	159197489	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	42596946	159197489	11917578	12	55357										
MAP3K4	0	genome.wustl.edu	37	chr6	161502011	161502011	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ttagaagaagaatggaatttCaccaaagaaataactcatta	6	5	2	4			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	161502011	161502011	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	silent	c.2196	p.F732	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	45	0	0	23	11	32.35	-	-	-	T	161502011	C	T	161502011	2	4	645	1	0	0	0	0	0	0	0	1	9323	825	29	2		2	MAP3K4	6	161502011	Silent	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09	2304522	161502011	9613056	13	55358										
PDE1C	0	genome.wustl.edu	37	chr7	31864536	31864536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ggtttcatcgattaatggacTcacaatcttctcggtcatgt	8	9	5	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	31864536	31864536	T	C	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	missense	c.1351	p.S451G	0.997	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	57	0	0	37	5	11.9	-	-	-	C	31864536	T	C	31864536	3	2	645	1	0	0	0	0	1	0	0	0	11708	1551	54	5	573	5	PDE1C	7	31864536	Missense_Mutation	SNP	T	TCGA-C8-A1HE-01A-11D-A188-09		31864536	127274127	14	55359										
FAM133B	0	genome.wustl.edu	37	chr7	92207495	92207495	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tcttcttttcttttttctttCtctaaatggaaacaaaagta	3	7	5	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	92207495	92207495	C	G	SNP	FAM133B	ENST00000445716	human	ensembl	69_37n	-1	known	missense	c.278	p.R93T	1.000	NULL	NULL	-	no_errors	FAM133B	HGNC	ENSG00000234545	87	0	0	48	29	37.66	-	-	-	G	92207495	C	G	92207495	3	3	645	1	0	0	0	0	1	0	0	0	5484	927	32	2	493	2	FAM133B	7	92207495	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09	60342959	92207495	66931168	15	55360										
ST7	0	genome.wustl.edu	37	chr7	116863013	116863013	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	gaaatccctccggcacctcaAtctcaacatttccaaaactg	4	15	2	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	116863013	116863013	A	G	SNP	ST7	ENST00000265437	human	ensembl	69_37n	1	known	silent	c.1737	p.Q579	0.047	NULL	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866	68	0	0	25	27	51.92	-	-	-	G	116863013	A	G	116863013	2	3	645	1	0	0	0	0	0	0	0	1	15320	98	4	5		5	ST7	7	116863013	Silent	SNP	A	TCGA-C8-A1HE-01A-11D-A188-09	24655518	116863013	42275650	16	55361										
PARP12	0	genome.wustl.edu	37	chr7	139756696	139756696	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	aaaagaggaggcactctgctGggggcagagctcttattctt	13	8	3	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	139756696	139756696	G	A	SNP	PARP12	ENST00000263549	human	ensembl	69_37n	-1	known	silent	c.720	p.P240	0.012	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378	42	0	0	17	5	22.73	-	-	-	A	139756696	G	A	139756696	2	1	645	1	0	0	0	0	0	0	0	1	11530	1335	47	4		4	PARP12	7	139756696	Silent	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	22893683	139756696	19381967	17	55362										
SNTB1	0	genome.wustl.edu	37	chr8	121644761	121644761	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ccccagctgctctctgacctCagcaatcactcgggtcagca	8	17	4	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	8	121644761	121644761	C	T	SNP	SNTB1	ENST00000395601	human	ensembl	69_37n	-1	known	missense	c.919	p.E307K	0.989	NULL	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164	47	0	0	18	14	43.75	-	-	-	T	121644761	C	T	121644761	3	4	645	1	0	0	0	0	1	0	0	0	14961	835	29	2	717	2	SNTB1	8	121644761	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		121644761	24719261	18	55363										
ABCC9	0	genome.wustl.edu	37	chr12	21953991	21953991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	cactccttcacatgtctgcgCgaacaaaagaagcaaatact	6	12	2	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	12	21953991	21953991	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.4637	p.R1546H	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	41	0	0	32	10	23.81	-	-	-	T	21953991	C	T	21953991	3	4	645	1	0	0	0	0	1	0	0	0	59	768	27	1	16	1	ABCC9	12	21953991	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		21953991	111897904	19	55364										
DCLK1	0	genome.wustl.edu	37	chr13	36367617	36367617	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ttttctgggaggccatcatcCtggagaaaaagaaataaaga	10	6	2	3			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	13	36367617	36367617	C	T	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	splice_site	c.1945-1	e15-1	1.000	-	-	-	no_errors	DCLK1	HGNC	ENSG00000133083	132	0	0	64	32	33.33	-	-	-	T	36367617	C	T	36367617	5	4	645	1	0	0	0	0	0	0	1	0	4322	695	24	4	257	4	DCLK1	13	36367617	Splice_Site	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		36367617	78802261	20	55365										
FAM124A	0	genome.wustl.edu	37	chr13	51855093	51855093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tggagacacccctcccctccGaaagatgcagcagccactgg	10	16	0	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	13	51855093	51855093	G	A	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	missense	c.1450	p.E484K	0.000	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	15	0	0	12	7	36.84	-	-	-	A	51855093	G	A	51855093	3	1	645	1	0	0	0	0	1	0	0	0	5465	1059	37	1	1468	1	FAM124A	13	51855093	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	15487476	51855093	63314785	21	55366										
CHSY1	0	genome.wustl.edu	37	chr15	101718167	101718167	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	aggatcctacttccagggccAgggctcttgaaaactctcca	9	13	2	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	15	101718167	101718167	A	T	SNP	CHSY1	ENST00000254190	human	ensembl	69_37n	-1	known	missense	c.1835	p.L612Q	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873	33	0	0	25	8	24.24	-	-	-	T	101718167	A	T	101718167	3	4	645	1	0	0	0	0	1	0	0	0	3441	188	7	5	577	5	CHSY1	15	101718167	Missense_Mutation	SNP	A	TCGA-C8-A1HE-01A-11D-A188-09		101718167	813225	22	55367										
CREBBP	0	genome.wustl.edu	37	chr16	3808953	3808953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ggttggcatgagggcctggcGtaactcctctggtttaaaga	14	8	1	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	16	3808953	3808953	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.3271	p.R1091C	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	40	0	0	19	16	44.44	-	-	-	A	3808953	G	A	3808953	3	1	645	1	0	0	0	0	1	0	0	0	3891	1145	40	1	4117	1	CREBBP	16	3808953	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		3808953	86545800	23	55368										
SLC5A11	0	genome.wustl.edu	37	chr16	24869995	24869995	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	gcaccagcagccctcagcctCcacagttagatcccctggat	8	17	1	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	16	24869995	24869995	C	A	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	missense	c.31	p.P11T	0.008	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	43	0	0	22	4	15.38	-	-	-	A	24869995	C	A	24869995	3	1	645	1	0	0	0	0	1	0	0	0	14752	855	30	2	33	2	SLC5A11	16	24869995	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09	21061042	24869995	65484758	24	55369										
HOXB13	0	genome.wustl.edu	37	chr17	46805422	46805422	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tggcaacacatctggctgttCcagccaccagcgagagccca	10	15	1	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	46805422	46805422	C	T	SNP	HOXB13	ENST00000290295	human	ensembl	69_37n	-1	known	nonsense	c.534	p.W178*	1.000	NULL	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXB13	HGNC	ENSG00000159184	33	0	0	17	10	37.04	-	-	-	T	46805422	C	T	46805422	4	4	645	1	0	0	0	0	0	1	0	0	7351	856	30	2	328	2	HOXB13	17	46805422	Nonsense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		46805422	34389788	25	55370										
NACA2	0	genome.wustl.edu	37	chr17	59668409	59668409	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ggctttttgtgtggtggtctGggtggaatcctgttcttcaa	14	6	3	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	59668409	59668409	G	A	SNP	NACA2	ENST00000521764	human	ensembl	69_37n	-1	known	nonsense	c.133	p.Q45*	1.000	pirsf_Nas_poly-pep-assoc_cplx_asu	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pirsf_Nas_poly-pep-assoc_cplx_asu,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA2	HGNC	ENSG00000253506	88	0	0	34	27	44.26	-	-	-	A	59668409	G	A	59668409	4	1	645	1	0	0	0	0	0	1	0	0	10206	1357	47	4	518	4	NACA2	17	59668409	Nonsense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	12862987	59668409	21526801	26	55371										
SDK2	0	genome.wustl.edu	37	chr17	71427712	71427712	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ccaggcaggtgtaggtccccGcatcggagatgtgtgtgggg	18	9	0	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	71427712	71427712	G	C	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1409	p.A470G	0.985	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	26	0	0	25	7	21.88	-	-	-	C	71427712	G	C	71427712	3	2	645	1	0	0	0	0	1	0	0	0	14057	1087	38	3	5249	3	SDK2	17	71427712	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	11759303	71427712	9767498	27	55372										
ZNF442	0	genome.wustl.edu	37	chr19	12461860	12461860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	cacattccttacaatcatagCgtttctttccagtgtgaggt	7	10	2	1			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	12461860	12461860	C	T	SNP	ZNF442	ENST00000242804	human	ensembl	69_37n	-1	known	missense	c.539	p.R180H	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342	117	0	0	61	25	29.07	-	-	-	T	12461860	C	T	12461860	3	4	645	1	0	0	0	0	1	0	0	0	18011	768	27	1	1348	1	ZNF442	19	12461860	Missense_Mutation	SNP	C	TCGA-C8-A1HE-01A-11D-A188-09		12461860	46667123	28	55373										
ZNF585A	0	genome.wustl.edu	37	chr19	37643456	37643456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	aacatggagttgcgacttggAggtaaacaatttcccacagt	10	8	0	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	37643456	37643456	A	C	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	missense	c.1345	p.S449A	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	73	0	0	36	16	30.77	-	-	-	C	37643456	A	C	37643456	3	2	645	1	0	0	0	0	1	0	0	0	18113	304	11	5	968	5	ZNF585A	19	37643456	Missense_Mutation	SNP	A	TCGA-C8-A1HE-01A-11D-A188-09	25181596	37643456	21485527	29	55374										
TBC1D17	0	genome.wustl.edu	37	chr19	50381800	50381800	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ctcctgtagaggaggctggaGattccacccaaatcctcttc	9	13	1	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	50381800	50381800	G	A	SNP	TBC1D17	ENST00000221543	human	ensembl	69_37n	1	known	missense	c.166	p.D56N	1.000	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946	39	0	0	24	21	46.67	-	-	-	A	50381800	G	A	50381800	3	1	645	1	0	0	0	0	1	0	0	0	15698	942	33	2	176	2	TBC1D17	19	50381800	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	12738344	50381800	8747183	30	55375										
MYBPC2	0	genome.wustl.edu	37	chr19	50946815	50946815	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	acaagtgcacgctggcggatGacgctgcctatgaagtagct	13	10	0	2			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	50946815	50946815	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	missense	c.967	p.D323N	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	35	0	0	12	8	40	-	-	-	A	50946815	G	A	50946815	3	1	645	1	0	0	0	0	1	0	0	0	10084	1290	45	2	1005	2	MYBPC2	19	50946815	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09	565015	50946815	8182168	31	55376										
PREX1	0	genome.wustl.edu	37	chr20	47254270	47254270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	tgtgcacttcagcaaggccaGgagcagctggttcttcccat	11	12	2	0			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	20	47254270	47254270	G	A	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	silent	c.3925	p.L1309	0.995	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	24	0	0	19	7	26.92	-	-	-	A	47254270	G	A	47254270	2	1	645	1	0	0	0	0	0	0	0	1	12557	991	35	4		4	PREX1	20	47254270	Silent	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		47254270	15771250	32	55377										
BRWD1	0	genome.wustl.edu	37	chr21	40670464	40670464	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	ataggaccgatgcgctggcaGatttgcaaaagatgatcagg	13	7	1	3			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	21	40670464	40670464	G	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	silent	c.243	p.I81	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	47	0	0	35	9	20.45	-	-	-	A	40670464	G	A	40670464	2	1	645	1	0	0	0	0	0	0	0	1	1533	932	33	2		2	BRWD1	21	40670464	Silent	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		40670464	7459431	33	55378										
TCF20	0	genome.wustl.edu	37	chr22	42608681	42608681	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	gagtgagcccctgggtccctGacaatctgtcttagtggaga	13	10	2	3			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	22	42608681	42608681	G	A	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	silent	c.2631	p.V877	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	36	0	0	13	10	43.48	-	-	-	A	42608681	G	A	42608681	2	1	645	1	0	0	0	0	0	0	0	1	15785	1277	45	2		2	TCF20	22	42608681	Silent	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		42608681	8695885	34	55379										
NGFRAP1	0	genome.wustl.edu	37	chrX	102632641	102632641	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.428571428571429	15	7.93398543726184e-05	3.3625637755102	4.70758928571429	3.13839285714286	0.00281433070874262	0.0561717435336792	11	gaaatattcatggaggagatGagagaaatcagaagaaaact	11	3	2	5			TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	X	102632641	102632641	G	A	SNP	NGFRAP1	ENST00000299872	human	ensembl	69_37n	1	known	missense	c.222	p.M74I	1.000	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	NGFRAP1	HGNC	ENSG00000166681	50	0	0	21	15	41.67	-	-	-	A	102632641	G	A	102632641	3	1	645	1	0	0	0	0	1	0	0	0	10469	1290	45	2	224	2	NGFRAP1	23	102632641	Missense_Mutation	SNP	G	TCGA-C8-A1HE-01A-11D-A188-09		102632641	52637919	35	55380										
ZSCAN20	0	genome.wustl.edu	37	chr1	33959019	33959019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	agccacccaccagggacatgCcctttctatgaggaactgga	10	13	1	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	1	33959019	33959019	C	T	SNP	ZSCAN20	ENST00000326544	human	ensembl	69_37n	1	known	silent	c.1677	p.C559	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	111	0	0	84	52	38.24	-	-	-	T	33959019	C	T	33959019	2	4	646	1	0	0	0	0	0	0	0	1	18324	747	26	4		4	ZSCAN20	1	33959019	Silent	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09		33959019	215291602	1	55381										
ARMC8	0	genome.wustl.edu	37	chr3	137991869	137991869	+	Frame_Shift_Del	DEL	G	G	-													0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ttttacgaagcttgagtactGaacagctattccggttatta							TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	3	137991869	137991869	G	-	DEL	ARMC8	ENST00000469044	human	ensembl	69_37n	1	known	frame_shift_del	c.1540	p.E514fs	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098	312	0	0	285	68	19.05	-	-	-	-	137991869	G	-	137991869	7	5	646	1	0	1	0	1	0	0	0	0	961	1291	45	0	1630	0	ARMC8	3	137991869	Frame_Shift_Del	DEL	G	TCGA-C8-A1HF-01A-11D-A135-09		137991869	60030561	2	55382										
PIK3CA	0	genome.wustl.edu	37	chr3	178937445	178937445	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	aattacccagatcctatggtTcgaggttttgctgttcggtg	11	8	0	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	3	178937445	178937445	T	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.1833	p.V611	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	181	0	0	279	44	13.62	-	-	-	G	178937445	T	G	178937445	2	3	646	1	0	0	0	0	0	0	0	1	11987	1770	62	5		5	PIK3CA	3	178937445	Silent	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09	40945576	178937445	19084985	3	55383										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	229	1	0.43	200	166	45.23	-	-	-	G	178952085	A	G	178952085	3	3	646	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A1HF-01A-11D-A135-09	14640	178952085	19070345	4	55384										
TTC29	0	genome.wustl.edu	37	chr4	147741289	147741289	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	agactcactttttcattgtaGatgtccccaagcattgtact	6	10	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	4	147741289	147741289	G	A	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	silent	c.1167	p.I389	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	411	0	0	336	141	29.56	-	-	-	A	147741289	G	A	147741289	2	1	646	1	0	0	0	0	0	0	0	1	16793	932	33	2		2	TTC29	4	147741289	Silent	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		147741289	43412987	5	55385										
EDNRA	0	genome.wustl.edu	37	chr4	148441015	148441015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	tctttcagctgctggctgggCgctggccttttgatcacaat	11	11	3	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	4	148441015	148441015	C	T	SNP	EDNRA	ENST00000324300	human	ensembl	69_37n	1	known	missense	c.433	p.R145C	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ETA_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ETA_rcpt,prints_Endthln_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	EDNRA	HGNC	ENSG00000151617	275	0	0	264	158	37	-	-	-	T	148441015	C	T	148441015	3	4	646	1	0	0	0	0	1	0	0	0	4954	768	27	1	439	1	EDNRA	4	148441015	Missense_Mutation	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09	699726	148441015	42713261	6	55386										
ITK	0	genome.wustl.edu	37	chr5	156659362	156659362	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	gctttcaggtggtacaataaGagtatcagccgagacaaagc	11	8	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	5	156659362	156659362	G	T	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	missense	c.726	p.K242N	1.000	pfam_SH2,superfamily_SH3_domain,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	108	0	0	73	66	47.48	-	-	-	T	156659362	G	T	156659362	3	4	646	1	0	0	0	0	1	0	0	0	7963	933	33	2	756	2	ITK	5	156659362	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		156659362	24255898	7	55387										
CASP8AP2	0	genome.wustl.edu	37	chr6	90578074	90578074	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	catacgtagatctaacgaaaGatccagtcactgaaaccaaa	6	10	2	3			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	6	90578074	90578074	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	168	0	0	113	67	37.22	-	-	-	A	90578074	G	A	90578074	1	1	646	0	1	0	0	0	0	0	0	0	2703	942	33	2		2	CASP8AP2	6	90578074	RNA	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		90578074	80536993	8	55388										
PREP	0	genome.wustl.edu	37	chr6	105816780	105816780	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ttcacagctgtacaatacctCagctccacccatccatttag	4	15	2	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	6	105816780	105816780	C	T	SNP	PREP	ENST00000369110	human	ensembl	69_37n	-1	known	missense	c.715	p.E239K	1.000	pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N	pfam_Peptidase_S9A_B_C_N,pfam_Peptidase_S9,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377	343	0	0	252	147	36.84	-	-	-	T	105816780	C	T	105816780	3	4	646	1	0	0	0	0	1	0	0	0	12555	835	29	2	1457	2	PREP	6	105816780	Missense_Mutation	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09	15238706	105816780	65298287	9	55389										
LPA	0	genome.wustl.edu	37	chr6	161016385	161016385	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	gtctggccatagacttcctaCcttcttcagaagaagcctct	7	13	4	3			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	6	161016385	161016385	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	splice_site	c.3469+1	e21+1	0.004	-	-	-	no_errors	LPA	HGNC	ENSG00000198670	247	0	0	183	100	35.21	-	-	-	T	161016385	C	T	161016385	5	4	646	1	0	0	0	0	0	0	1	0	8969	521	18	4	2728	4	LPA	6	161016385	Splice_Site	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09	55199605	161016385	10098682	10	55390										
POM121	0	genome.wustl.edu	37	chr7	72413581	72413581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	cacctccgtccatgatcaagGtcgtgcctgcgtacgtgcct	10	15	1	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	7	72413581	72413581	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.3049	p.V1017I	0.026	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	107	1	0.93	128	17	11.64	-	-	-	A	72413581	G	A	72413581	3	1	646	1	0	0	0	0	1	0	0	0	12313	1261	44	4	2292	4	POM121	7	72413581	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		72413581	86725082	11	55391										
AHCYL2	0	genome.wustl.edu	37	chr7	129008388	129008388	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	agcttttcacatgcctgagtGgatggtgagttcactggtcg	13	8	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	7	129008388	129008388	G	C	SNP	AHCYL2	ENST00000446212	human	ensembl	69_37n	1	known	missense	c.53	p.W18S	1.000	NULL	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467	641	0	0	261	298	53.31	-	-	-	C	129008388	G	C	129008388	3	2	646	1	0	0	0	0	1	0	0	0	411	1357	47	4	422	4	AHCYL2	7	129008388	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09	56594807	129008388	30130275	12	55392										
XKR5	0	genome.wustl.edu	37	chr8	6679393	6679393	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	aagaaaagtgccacttgccaTgtagaacgtgaccatcctat	8	10	0	3			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	8	6679393	6679393	T	A	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	147	0	0	88	34	27.64	-	-	-	A	6679393	T	A	6679393	1	1	646	0	1	0	0	0	0	0	0	0	17531	1464	51	5		5	XKR5	8	6679393	RNA	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09		6679393	139684629	13	55393										
COL27A1	0	genome.wustl.edu	37	chr9	117071730	117071730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	tgaagctgggggtcagttccGgcccgaggtgtccatggatg	17	9	1	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	9	117071730	117071730	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.5408	p.R1803Q	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	67	0	0	47	24	33.33	-	-	-	A	117071730	G	A	117071730	3	1	646	1	0	0	0	0	1	0	0	0	3715	1116	39	1	5646	1	COL27A1	9	117071730	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		117071730	24141701	14	55394										
IFIT5	0	genome.wustl.edu	37	chr10	91178167	91178167	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ccatcattatttagaagcctTaaaggtcaaagacagatcac	6	9	3	3			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	10	91178167	91178167	T	G	SNP	IFIT5	ENST00000371795	human	ensembl	69_37n	1	known	nonsense	c.1211	p.L404*	0.790	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778	333	0	0	260	78	23.08	-	-	-	G	91178167	T	G	91178167	4	3	646	1	0	0	0	0	0	1	0	0	7579	1764	61	5	1217	5	IFIT5	10	91178167	Nonsense_Mutation	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09		91178167	44356580	15	55395										
GRAMD1B	0	genome.wustl.edu	37	chr11	123448232	123448232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	cgtccacaccggagcagggcGtgcagcgcagctgctcctcc	13	17	0	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	11	123448232	123448232	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	missense	c.181	p.V61M	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	34	0	0	23	8	25.81	-	-	-	A	123448232	G	A	123448232	3	1	646	1	0	0	0	0	1	0	0	0	6799	1145	40	1	187	1	GRAMD1B	11	123448232	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		123448232	11558284	16	55396										
MMP19	0	genome.wustl.edu	37	chr12	56236540	56236540	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ggacttaccacaggcgccacCtctgcaagccccaggacccg	10	18	1	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	12	56236540	56236540	C	A	SNP	MMP19	ENST00000322569	human	ensembl	69_37n	-1	known	missense	c.75	p.E25D	0.299	pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP19	HGNC	ENSG00000123342	36	0	0	31	18	36.73	-	-	-	A	56236540	C	A	56236540	3	1	646	1	0	0	0	0	1	0	0	0	9728	680	24	4	1487	4	MMP19	12	56236540	Missense_Mutation	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09		56236540	77615355	17	55397										
FERMT2	0	genome.wustl.edu	37	chr14	53325259	53325259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	tcgtacttcatctgcaaactCtacggtgacctggaacaaag	8	11	3	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	14	53325259	53325259	C	G	SNP	FERMT2	ENST00000343279	human	ensembl	69_37n	-1	known	missense	c.1900	p.E634Q	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712	238	0	0	194	56	22.31	-	-	-	G	53325259	C	G	53325259	3	3	646	1	0	0	0	0	1	0	0	0	5864	922	32	2	167	2	FERMT2	14	53325259	Missense_Mutation	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09		53325259	54024281	18	55398										
PRPF8	0	genome.wustl.edu	37	chr17	1561627	1561627	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ccctgtgcgtgggttgaagaTgaagatggctccgttgatgg	16	7	0	5			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	17	1561627	1561627	T	C	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.5425	p.I1809V	1.000	pfam_PRP8_domainIV	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	390	0	0	147	179	54.74	-	-	-	C	1561627	T	C	1561627	3	2	646	1	0	0	0	0	1	0	0	0	12656	1464	51	5	1622	5	PRPF8	17	1561627	Missense_Mutation	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09		1561627	79633583	19	55399										
TP53	0	genome.wustl.edu	37	chr17	7578395	7578395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	gctatctgagcagcgctcatGgtgggggcagcgcctcacaa	14	12	3	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	17	7578395	7578395	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.535	p.H179Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	148	0	0	38	51	57.3	-	-	-	A	7578395	G	A	7578395	3	1	646	1	0	0	0	0	1	0	0	0	16477	1348	47	4	763	4	TP53	17	7578395	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09	6016768	7578395	73616815	20	55400										
MYH13	0	genome.wustl.edu	37	chr17	10247167	10247167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ggaaggagagaagcttcagcGaagacttctggtacagcccc	13	10	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	17	10247167	10247167	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.1844	p.S615L	0.620	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	346	0	0	136	133	49.44	-	-	-	A	10247167	G	A	10247167	3	1	646	1	0	0	0	0	1	0	0	0	10104	1059	37	1	4076	1	MYH13	17	10247167	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09	2668772	10247167	70948043	21	55401										
MOCOS	0	genome.wustl.edu	37	chr18	33785149	33785149	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	cctgtggtgcggatttacagCgattctgagttcagcagccc	12	11	2	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	18	33785149	33785149	C	T	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	silent	c.1128	p.S376	0.041	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	272	0	0	258	140	35.18	-	-	-	T	33785149	C	T	33785149	2	4	646	1	0	0	0	0	0	0	0	1	9761	767	27	1		1	MOCOS	18	33785149	Silent	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09		33785149	44292099	22	55402										
NEDD4L	0	genome.wustl.edu	37	chr18	55992246	55992246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	agcatggatgggaagttgttGactcaaatgactcggcttct	12	7	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	18	55992246	55992246	G	C	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.532	p.D178H	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	399	0	0	322	171	34.69	-	-	-	C	55992246	G	C	55992246	3	2	646	1	0	0	0	0	1	0	0	0	10383	1290	45	2	594	2	NEDD4L	18	55992246	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09	22207097	55992246	22085002	23	55403										
CA11	0	genome.wustl.edu	37	chr19	49142211	49142211	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ggggtccctgttgcccctcaGtgccctgtgggccaagggct	15	14	1	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	19	49142211	49142211	G	A	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	silent	c.895	p.L299	0.935	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	65	0	0	33	31	48.44	-	-	-	A	49142211	G	A	49142211	2	1	646	1	0	0	0	0	0	0	0	1	2537	1020	36	4		4	CA11	19	49142211	Silent	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09		49142211	9986772	24	55404										
LIM2	0	genome.wustl.edu	37	chr19	51890455	51890455	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ctccatctggaatacaggtgTccttgggccccgaggtccgc	12	14	1	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	19	51890455	51890455	T	A	SNP	LIM2	ENST00000221973	human	ensembl	69_37n	-1	known	silent	c.243	p.G81	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_LMIP,prints_PMP22_EMP_MP20	-	no_errors	LIM2	HGNC	ENSG00000105370	101	0	0	67	18	20.93	-	-	-	A	51890455	T	A	51890455	2	1	646	1	0	0	0	0	0	0	0	1	8850	1654	58	5		5	LIM2	19	51890455	Silent	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09	2748244	51890455	7238528	25	55405										
RBL1	0	genome.wustl.edu	37	chr20	35675538	35675538	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	agctataggcaaagagcacaAtttccaaacaacaagccatc	6	11	0	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	20	35675538	35675538	A	C	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.1523	p.I508S	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	223	0	0	187	90	32.49	-	-	-	C	35675538	A	C	35675538	3	2	646	1	0	0	0	0	1	0	0	0	13192	101	4	5	1736	5	RBL1	20	35675538	Missense_Mutation	SNP	A	TCGA-C8-A1HF-01A-11D-A135-09		35675538	27349982	26	55406										
RPS21	0	genome.wustl.edu	37	chr20	60963388	60963388	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	gagtcagatgattccattctCcgattggccaaggccgatgg	12	10	2	2			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	20	60963388	60963388	C	T	SNP	RPS21	ENST00000317311	human	ensembl	69_37n	1	known	silent	c.210	p.L70	0.976	pfam_Ribosomal_S21e,pirsf_Ribosomal_S21e	pfam_Ribosomal_S21e,pirsf_Ribosomal_S21e	-	no_errors	RPS21	HGNC	ENSG00000171858	257	0	0	188	113	37.54	-	-	-	T	60963388	C	T	60963388	2	4	646	1	0	0	0	0	0	0	0	1	13719	842	30	2		2	RPS21	20	60963388	Silent	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09	25287850	60963388	2062132	27	55407										
CCT8	0	genome.wustl.edu	37	chr21	30445874	30445874	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	tcgctccctccttgagcatcTgggcaaagcccggagccttg	11	15	1	1			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	21	30445874	30445874	T	A	SNP	CCT8	ENST00000431234	human	ensembl	69_37n	-1	putative	nonsense	c.13	p.R5*	1.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCT8	HGNC	ENSG00000156261	219	0	0	105	97	47.55	-	-	-	A	30445874	T	A	30445874	4	1	646	1	0	0	0	0	0	1	0	0	2989	1580	55	5	1668	5	CCT8	21	30445874	Nonsense_Mutation	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09		30445874	17684021	28	55408										
RUNX1	0	genome.wustl.edu	37	chr21	36206753	36206753	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ttaaaggcagtggagtggttCagggaggcacgagggttggg	20	4	1	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	21	36206753	36206753	C	T	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	322	0	0	199	68	25.47	-	-	-	T	36206753	C	T	36206753	2	4	646	1	0	0	0	0	0	0	0	1	13832	813	29	2		2	RUNX1	21	36206753	Silent	SNP	C	TCGA-C8-A1HF-01A-11D-A135-09	5760879	36206753	11923142	29	55409										
BEND2	0	genome.wustl.edu	37	chrX	18234761	18234761	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	ggaatcatctgctatgtcatTagtggaattatctgctgttt	9	6	4	0			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	X	18234761	18234761	T	A	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	missense	c.118	p.N40Y	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	552	0	0	514	121	19.06	-	-	-	A	18234761	T	A	18234761	3	1	646	1	0	0	0	0	1	0	0	0	1402	1754	61	5	2359	5	BEND2	23	18234761	Missense_Mutation	SNP	T	TCGA-C8-A1HF-01A-11D-A135-09		18234761	137035799	30	55410										
CNGA2	0	genome.wustl.edu	37	chrX	150912895	150912895	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.225806451612903	7	0.0714327308801754	2.48587257617729	4.49824561403509	2.10855263157895	0.314685314685315	0.930327025915261	0	acagttctggaaaccaagatGaaacagaacaatgaagatga	9	6	1	6			TCGA-C8-A1HF-01A-11D-A135-09	TCGA-C8-A1HF-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	508a26f2-d117-44aa-b579-00a119b8bcc4	7ab5304c-1c60-4d91-8009-808ae01ee432	X	150912895	150912895	G	A	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	missense	c.1920	p.M640I	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	150	0	0	105	16	13.22	-	-	-	A	150912895	G	A	150912895	3	1	646	1	0	0	0	0	1	0	0	0	3627	1290	45	2	1942	2	CNGA2	23	150912895	Missense_Mutation	SNP	G	TCGA-C8-A1HF-01A-11D-A135-09	132678134	150912895	4357665	31	55411										
CD1E	0	genome.wustl.edu	37	chr1	158326560	158326560	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ccccacacacccagccctgtCtttctcatgggagccaacac	6	19	2	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	1	158326560	158326560	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	silent	c.1041	p.V347	0.000	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	396	0	0	467	74	13.68	-	-	-	T	158326560	C	T	158326560	2	4	647	1	0	0	0	0	0	0	0	1	3007	900	32	2		2	CD1E	1	158326560	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		158326560	90924061	1	55412										
ZP4	0	genome.wustl.edu	37	chr1	238048592	238048592	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cagggatcagctgggtctgaTagttgtctccaatgtagggg	15	7	3	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	1	238048592	238048592	T	C	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.1184	p.Y395C	0.991	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	230	0	0	138	62	31	-	-	-	C	238048592	T	C	238048592	3	2	647	1	0	0	0	0	1	0	0	0	18311	1406	49	5	454	5	ZP4	1	238048592	Missense_Mutation	SNP	T	TCGA-C8-A1HG-01A-11D-A135-09	79722032	238048592	11202029	2	55413										
TTC31	0	genome.wustl.edu	37	chr2	74719773	74719773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tgatccctctgggaccaaagCgcttcagagaggcagctgct	12	12	2	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	2	74719773	74719773	C	T	SNP	TTC31	ENST00000233623	human	ensembl	69_37n	1	novel	missense	c.1162	p.R388C	0.923	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC31	HGNC	ENSG00000115282	121	0	0	96	31	24.41	-	-	-	T	74719773	C	T	74719773	3	4	647	1	0	0	0	0	1	0	0	0	16797	782	27	1	1208	1	TTC31	2	74719773	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		74719773	168479600	3	55414										
CCDC115	0	genome.wustl.edu	37	chr2	131099725	131099727	+	In_Frame_Del	DEL	CTT	CTT	-													0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	acctccagatctggagccacCttcttccttgtcaccctccg							TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	2	131099725	131099727	CTT	-	DEL	CCDC115	ENST00000437688	human	ensembl	69_37n	-1	known	in_frame_del	c.78_76	p.K26in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	CCDC115	HGNC	ENSG00000136710	55	0	0	34	9	20.93	-	-	-	-	131099727	CTT	-	131099725	7	5	647	1	0	1	0	1	0	0	0	0	2777	696	24	0		0	CCDC115	2	131099725	In_Frame_Del	DEL	CTT	TCGA-C8-A1HG-01A-11D-A135-09	56379952	131099725	112099648	4	55415										
MAGI1	0	genome.wustl.edu	37	chr3	65361584	65361584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cagggctcccctcaataatcCgacctattttgtgaggcata	8	12	1	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	3	65361584	65361584	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3032	p.R1011Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	325	0	0	196	57	22.53	-	-	-	T	65361584	C	T	65361584	3	4	647	1	0	0	0	0	1	0	0	0	9261	652	23	1	1523	1	MAGI1	3	65361584	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		65361584	132660846	5	55416										
P2RY13	0	genome.wustl.edu	37	chr3	151046371	151046371	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ttgagaccgtttttgcaaaaAcaggtttttttagaaaaata	7	4	0	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	3	151046371	151046371	A	G	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	missense	c.473	p.V158A	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_UDPG_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	30	0	0	68	11	13.92	-	-	-	G	151046371	A	G	151046371	3	3	647	1	0	0	0	0	1	0	0	0	11423	43	2	5	595	5	P2RY13	3	151046371	Missense_Mutation	SNP	A	TCGA-C8-A1HG-01A-11D-A135-09	85684787	151046371	46976059	6	55417										
NOP14	0	genome.wustl.edu	37	chr4	2955267	2955267	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ttcctttttgtctctgttctCtgacttgggagttttgtggg	11	7	2	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	4	2955267	2955267	C	G	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	missense	c.718	p.E240Q	0.227	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	540	0	0	431	88	16.96	-	-	-	G	2955267	C	G	2955267	3	3	647	1	0	0	0	0	1	0	0	0	10608	922	32	2	1911	2	NOP14	4	2955267	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		2955267	188199009	7	55418										
HGFAC	0	genome.wustl.edu	37	chr4	3445881	3445881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gccttcaccggcaaggactgCggcacaggtgagctgggcct	15	13	1	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	4	3445881	3445881	C	T	SNP	HGFAC	ENST00000382774	human	ensembl	69_37n	1	known	silent	c.591	p.C197	0.007	pirsf_Coagulation_fac_XIIa/HGFA,smart_EGF-like,pfscan_EG-like_dom	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	HGFAC	HGNC	ENSG00000109758	35	0	0	13	5	27.78	-	-	-	T	3445881	C	T	3445881	2	4	647	1	0	0	0	0	0	0	0	1	7137	776	27	1		1	HGFAC	4	3445881	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	490614	3445881	187708395	8	55419										
EPHA5	0	genome.wustl.edu	37	chr4	66197758	66197758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	catgaaaatctctgtataccGgcccatcttgattgcctcta	6	12	3	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	4	66197758	66197758	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.2941	p.R981W	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_SAM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	196	1	0.51	168	61	26.64	-	-	-	A	66197758	G	A	66197758	3	1	647	1	0	0	0	0	1	0	0	0	5207	1115	39	1	180	1	EPHA5	4	66197758	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	62751877	66197758	124956518	9	55420										
SPP1	0	genome.wustl.edu	37	chr4	88901223	88901223	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	caacaaatacccagatgctgTggccacatggctaaaccctg	8	13	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	4	88901223	88901223	T	C	SNP	SPP1	ENST00000395080	human	ensembl	69_37n	1	known	missense	c.119	p.V40A	0.004	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785	272	0	0	185	109	36.95	-	-	-	C	88901223	T	C	88901223	3	2	647	1	0	0	0	0	1	0	0	0	15177	1696	59	5	129	5	SPP1	4	88901223	Missense_Mutation	SNP	T	TCGA-C8-A1HG-01A-11D-A135-09	22703465	88901223	102253053	10	55421										
KIAA0922	0	genome.wustl.edu	37	chr4	154479493	154479493	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tattttctgcttccaaaggtCcagagcattcagctgtctca	7	11	3	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	4	154479493	154479493	C	G	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	silent	c.633	p.V211	0.983	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	251	0	0	208	38	15.45	-	-	-	G	154479493	C	G	154479493	2	3	647	1	0	0	0	0	0	0	0	1	8253	842	30	2		2	KIAA0922	4	154479493	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	65578270	154479493	36674783	11	55422										
HEATR7B2	0	genome.wustl.edu	37	chr5	41033173	41033173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ccaatcagcatctccttgtaGgaaaactggaacccctgatc	7	13	2	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	5	41033173	41033173	G	A	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	silent	c.2331	p.S777	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	444	0	0	352	68	16.19	-	-	-	A	41033173	G	A	41033173	2	1	647	1	0	0	0	0	0	0	0	1	7086	987	35	4		4	HEATR7B2	5	41033173	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		41033173	139882087	12	55423										
DOPEY1	0	genome.wustl.edu	37	chr6	83863703	83863703	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cggagagcttggaaaaaagaAgcttttgacctctttatgga	11	6	1	3			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	6	83863703	83863703	A	T	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.6330	p.E2110D	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	699	0	0	264	249	48.54	-	-	-	T	83863703	A	T	83863703	3	4	647	1	0	0	0	0	1	0	0	0	4742	69	3	5	6448	5	DOPEY1	6	83863703	Missense_Mutation	SNP	A	TCGA-C8-A1HG-01A-11D-A135-09		83863703	87251364	13	55424										
C7orf41	0	genome.wustl.edu	37	chr7	30197080	30197080	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gggcttccggatgcagatgaCgatgcgtttgaagagtacag	15	7	0	4			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	7	30197080	30197080	C	T	SNP	C7orf41	ENST00000324453	human	ensembl	69_37n	1	known	silent	c.312	p.D104	0.972	NULL	NULL	-	no_errors	C7orf41	HGNC	ENSG00000180354	232	0	0	147	90	37.97	-	-	-	T	30197080	C	T	30197080	2	4	647	1	0	0	0	0	0	0	0	1	2414	535	19	1		1	C7orf41	7	30197080	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		30197080	128941583	14	55425										
SEMA3D	0	genome.wustl.edu	37	chr7	84649620	84649620	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ctttgaaatgctgacaacttTgaggacagttccaatgtctg	9	8	1	3			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	7	84649620	84649620	T	A	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	nonsense	c.1432	p.K478*	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	248	0	0	231	32	12.12	-	-	-	A	84649620	T	A	84649620	4	1	647	1	0	0	0	0	0	1	0	0	14115	1821	63	5	925	5	SEMA3D	7	84649620	Nonsense_Mutation	SNP	T	TCGA-C8-A1HG-01A-11D-A135-09	54452540	84649620	74489043	15	55426										
FBXO25	0	genome.wustl.edu	37	chr8	413124	413124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gagacacactgcatttctgtCggcactgcagcattctcttt	8	12	2	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	8	413124	413124	C	T	SNP	FBXO25	ENST00000276326	human	ensembl	69_37n	1	known	missense	c.961	p.R321W	0.993	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO25	HGNC	ENSG00000147364	415	0	0	152	65	29.95	-	-	-	T	413124	C	T	413124	3	4	647	1	0	0	0	0	1	0	0	0	5782	875	31	1	991	1	FBXO25	8	413124	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		413124	145950898	16	55427										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37720512	37720512	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	aggttgtcaatgtagtcttcCagctcgcggacctggaactc	11	11	2	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	8	37720512	37720512	C	T	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	silent	c.3753	p.L1251	1.000	pfam_Rab-bd_FIP-RBD	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	437	0	0	537	190	26.06	-	-	-	T	37720512	C	T	37720512	2	4	647	1	0	0	0	0	0	0	0	1	12976	581	21	4		4	RAB11FIP1	8	37720512	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	37307388	37720512	108643510	17	55428										
TOX	0	genome.wustl.edu	37	chr8	59852038	59852038	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tgcaccagcgagtggtctggGagggaaggaggagtaattgg	19	5	1	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	8	59852038	59852038	G	A	SNP	TOX	ENST00000361421	human	ensembl	69_37n	-1	known	silent	c.234	p.L78	0.995	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX	HGNC	ENSG00000198846	272	0	0	657	90	12.05	-	-	-	A	59852038	G	A	59852038	2	1	647	1	0	0	0	0	0	0	0	1	16473	1161	41	2		2	TOX	8	59852038	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	22131526	59852038	86511984	18	55429										
ALDH1A1	0	genome.wustl.edu	37	chr9	75540487	75540487	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gtgtttccacagctcagtgcAggccctatcttccaaatgag	9	12	2	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	9	75540487	75540487	A	C	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	silent	c.546	p.P182	0.990	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	230	0	0	252	38	13.1	-	-	-	C	75540487	A	C	75540487	2	2	647	1	0	0	0	0	0	0	0	1	490	175	7	5		5	ALDH1A1	9	75540487	Silent	SNP	A	TCGA-C8-A1HG-01A-11D-A135-09		75540487	65672944	19	55430										
ALDOB	0	genome.wustl.edu	37	chr9	104193120	104193120	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	caatgctctgggcaatttctGagagctccttcttctgctcc	8	13	4	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	9	104193120	104193120	G	A	SNP	ALDOB	ENST00000374855	human	ensembl	69_37n	-1	known	missense	c.50	p.S17L	0.986	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOB	HGNC	ENSG00000136872	317	0	0	312	53	14.52	-	-	-	A	104193120	G	A	104193120	3	1	647	1	0	0	0	0	1	0	0	0	508	1294	45	2	1076	2	ALDOB	9	104193120	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	28652633	104193120	37020311	20	55431										
TNC	0	genome.wustl.edu	37	chr9	117840365	117840365	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gatcgatggtggtacggtctCctggcacgtctttgatgccg	14	10	2	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	9	117840365	117840365	C	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.2531	p.G844V	0.718	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	284	0	0	209	110	34.38	-	-	-	A	117840365	C	A	117840365	3	1	647	1	0	0	0	0	1	0	0	0	16365	855	30	2	4162	2	TNC	9	117840365	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	13647245	117840365	23373066	21	55432										
DENND1A	0	genome.wustl.edu	37	chr9	126429352	126429354	+	In_Frame_Del	DEL	AAG	AAG	-													0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ggtatcaggcacagtaaaatAagaatgctagaaaagaaaag							TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	9	126429352	126429354	AAG	-	DEL	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	in_frame_del	c.364_362	p.S121in_frame_del	1.000:1.000:1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	188	0	0	244	38	13.43	-	-	-	-	126429354	AAG	-	126429352	7	5	647	1	0	1	0	1	0	0	0	0	4462	362	13	0	2736	0	DENND1A	9	126429352	In_Frame_Del	DEL	AAG	TCGA-C8-A1HG-01A-11D-A135-09	8588987	126429352	14784079	22	55433										
DNM1	0	genome.wustl.edu	37	chr9	130996358	130996358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	catcgtgaccacccacatccGggagcgcgagggccgcacta	12	16	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	9	130996358	130996358	G	A	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.1394	p.R465Q	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	25	0	0	9	13	59.09	-	-	-	A	130996358	G	A	130996358	3	1	647	1	0	0	0	0	1	0	0	0	4705	1116	39	1	1436	1	DNM1	9	130996358	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	4567006	130996358	10217073	23	55434										
ETS1	0	genome.wustl.edu	37	chr11	128354830	128354830	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gggtctcggagaatgaccgaGgggtagtcattctcatactt	13	8	3	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	11	128354830	128354830	G	C	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	silent	c.750	p.P250	0.796	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	265	0	0	202	64	23.97	-	-	-	C	128354830	G	C	128354830	2	2	647	1	0	0	0	0	0	0	0	1	5312	987	35	4		4	ETS1	11	128354830	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		128354830	6651686	24	55435										
NELL2	0	genome.wustl.edu	37	chr12	45269656	45269656	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	aagacccgagactccatggtGcggatcagctcagtccatcg	11	13	2	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	12	45269656	45269656	G	A	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	silent	c.147	p.R49	0.483	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	97	0	0	64	16	20	-	-	-	A	45269656	G	A	45269656	2	1	647	1	0	0	0	0	0	0	0	1	10406	1306	46	4		4	NELL2	12	45269656	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		45269656	88582239	25	55436										
DPY19L2	0	genome.wustl.edu	37	chr12	64055199	64055199	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	agcctgtcattcataatcatCcacagtccttccaaaaacga	4	13	3	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	12	64055199	64055199	C	T	SNP	DPY19L2	ENST00000324472	human	ensembl	69_37n	-1	known	nonsense	c.513	p.W171*	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L2	HGNC	ENSG00000177990	268	0	0	551	106	16.13	-	-	-	T	64055199	C	T	64055199	4	4	647	1	0	0	0	0	0	1	0	0	4776	856	30	2	1839	2	DPY19L2	12	64055199	Nonsense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	18785543	64055199	69796696	26	55437										
TRHDE	0	genome.wustl.edu	37	chr12	72667271	72667271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	caatctgaagattatctacaAcgcgctcatcgagaatgagc	8	10	3	4			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	12	72667271	72667271	A	T	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.713	p.N238I	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	29	0	0	28	11	28.21	-	-	-	T	72667271	A	T	72667271	3	4	647	1	0	0	0	0	1	0	0	0	16575	43	2	5	715	5	TRHDE	12	72667271	Missense_Mutation	SNP	A	TCGA-C8-A1HG-01A-11D-A135-09	8612072	72667271	61184624	27	55438										
SSH1	0	genome.wustl.edu	37	chr12	109185905	109185905	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gaaagaaccctcaggtccctGgagatgggagctgggggccc	16	11	1	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	12	109185905	109185905	G	A	SNP	SSH1	ENST00000326470	human	ensembl	69_37n	-1	known	nonsense	c.2083	p.Q695*	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112	55	0	0	50	35	41.18	-	-	-	A	109185905	G	A	109185905	4	1	647	1	0	0	0	0	0	1	0	0	15275	1357	47	4	1293	4	SSH1	12	109185905	Nonsense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	36518634	109185905	24665990	28	55439										
VPS13C	0	genome.wustl.edu	37	chr15	62146723	62146723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tcaatttttgctgctgtctcGttgactgtgcatcctcaatg	8	10	3	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	15	62146723	62146723	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.11195	p.T3732M	0.008	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	216	0	0	179	37	17.13	-	-	-	A	62146723	G	A	62146723	3	1	647	1	0	0	0	0	1	0	0	0	17288	1145	40	1	70	1	VPS13C	15	62146723	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		62146723	40384669	29	55440										
CORO7	0	genome.wustl.edu	37	chr16	4412030	4412030	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gctgctgagcagcggcacggCcacacgcagcttgttggcac	14	14	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	16	4412030	4412030	C	T	SNP	CORO7	ENST00000576437	human	ensembl	69_37n	-1	known	nonsense	c.219	p.W73*	1.000	NULL	NULL	-	no_errors	CORO7	Clone_based_vega_gene	ENSG00000262246	69	0	0	43	28	39.44	-	-	-	T	4412030	C	T	4412030	4	4	647	1	0	0	0	0	0	1	0	0	3789	739	26	4	1295	4	CORO7	16	4412030	Nonsense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		4412030	85942723	30	55441										
TP53	0	genome.wustl.edu	37	chr17	7578509	7578509	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	aacccacagctgcacagggcAggtcttggccagttggcaaa	12	12	1	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	17	7578509	7578509	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.421	p.C141R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	146	1	0.68	40	47	54.02	-	-	-	G	7578509	A	G	7578509	3	3	647	1	0	0	0	0	1	0	0	0	16477	188	7	5	877	5	TP53	17	7578509	Missense_Mutation	SNP	A	TCGA-C8-A1HG-01A-11D-A135-09		7578509	73616701	31	55442										
KRT33A	0	genome.wustl.edu	37	chr17	39503181	39503181	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	ccgcctggtaggactgcagcTgctccgagctggataccacc	12	15	0	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	17	39503181	39503181	T	G	SNP	KRT33A	ENST00000007735	human	ensembl	69_37n	-1	known	missense	c.791	p.Q264P	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059	280	1	0.36	187	103	35.52	-	-	-	G	39503181	T	G	39503181	3	3	647	1	0	0	0	0	1	0	0	0	8522	1580	55	5	435	5	KRT33A	17	39503181	Missense_Mutation	SNP	T	TCGA-C8-A1HG-01A-11D-A135-09	31924672	39503181	41692029	32	55443										
KIF2B	0	genome.wustl.edu	37	chr17	51900989	51900989	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	aagagtatcgcaggcacctgGacagcagcaagatctcagtc	11	11	1	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	17	51900989	51900989	G	C	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.595	p.D199H	0.705	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	73	0	0	72	8	10	-	-	-	C	51900989	G	C	51900989	3	2	647	1	0	0	0	0	1	0	0	0	8350	1174	41	2	597	2	KIF2B	17	51900989	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	12397808	51900989	29294221	33	55444										
FHOD3	0	genome.wustl.edu	37	chr18	34238119	34238119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cccaccacccccacatcatcCgtctcacccccacaggaggc	5	23	2	0			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	18	34238119	34238119	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	silent	c.1278	p.S426	0.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	482	0	0	658	98	12.88	-	-	-	T	34238119	C	T	34238119	2	4	647	1	0	0	0	0	0	0	0	1	5929	639	23	1		1	FHOD3	18	34238119	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		34238119	43839129	34	55445										
MUC16	0	genome.wustl.edu	37	chr19	9000463	9000463	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	agaccctgaaggactctctcCgtggtgttaaactttctaga	9	10	2	3			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	19	9000463	9000463	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.40521	p.T13507	0.000	pfam_SEA,smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	615	2	0.32	439	125	22.16	-	-	-	T	9000463	C	T	9000463	2	4	647	1	0	0	0	0	0	0	0	1	10045	639	23	1		1	MUC16	19	9000463	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		9000463	50128520	35	55446										
EIF3G	0	genome.wustl.edu	37	chr19	10226169	10226169	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tcttacttggcccactcgacGttgaggatgaggtggtcgta	13	9	1	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	19	10226169	10226169	G	A	SNP	EIF3G	ENST00000253108	human	ensembl	69_37n	-1	known	silent	c.933	p.N311	0.983	smart_RRM_dom,pirsf_Transl_init_eIF-3_G,pfscan_RRM_dom	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_Transl_init_eIF-3_G,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811	141	1	0.7	79	18	18.56	-	-	-	A	10226169	G	A	10226169	2	1	647	1	0	0	0	0	0	0	0	1	5054	1136	40	1		1	EIF3G	19	10226169	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	1225706	10226169	48902814	36	55447										
ATP9A	0	genome.wustl.edu	37	chr20	50329531	50329532	+	Frame_Shift_Ins	INS	-	-	G													0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	tgtgagccggctgtagacctINSgggagttgacttccttgtcc							TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	20	50329531	50329532	-	G	INS	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.410_409	p.Q137fs	1.000:1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	91	0	0	72	14	16.28	-	-	-	G	50329532	-	G	50329531	7	5	647	1	0	1	1	0	0	0	0	0	1202	1580	55	0	2833	0	ATP9A	20	50329531	Frame_Shift_Ins	INS	-	TCGA-C8-A1HG-01A-11D-A135-09		50329531	12695989	37	55448										
COL6A2	0	genome.wustl.edu	37	chr21	47539719	47539719	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	caggggcgcaggggagacccCggcaccaagggcagcccagg	18	14	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	21	47539719	47539719	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	silent	c.1287	p.P429	0.258	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	40	0	0	17	11	39.29	-	-	-	T	47539719	C	T	47539719	2	4	647	1	0	0	0	0	0	0	0	1	3730	639	23	1		1	COL6A2	21	47539719	Silent	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09		47539719	590176	38	55449										
TRMT2A	0	genome.wustl.edu	37	chr22	20103765	20103765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gtgggcggcctttccagaggGcaccatgcaaaacgcgcagg	15	12	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	22	20103765	20103765	G	A	SNP	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	missense	c.395	p.A132V	0.947	pfscan_RRM_dom	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	41	0	0	48	11	18.64	-	-	-	A	20103765	G	A	20103765	3	1	647	1	0	0	0	0	1	0	0	0	16661	1203	42	4	1526	4	TRMT2A	22	20103765	Missense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		20103765	31200801	39	55450										
SMCR7L	0	genome.wustl.edu	37	chr22	39907907	39907907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cccacccgcctgagccattcGgggaaaaggagctgggaaga	14	12	0	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	22	39907907	39907907	G	A	SNP	SMCR7L	ENST00000325301	human	ensembl	69_37n	1	known	silent	c.198	p.S66	0.500	NULL	NULL	-	no_errors	SMCR7L	HGNC	ENSG00000100335	88	0	0	89	18	16.82	-	-	-	A	39907907	G	A	39907907	2	1	647	1	0	0	0	0	0	0	0	1	14880	1103	39	1		1	SMCR7L	22	39907907	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	19804142	39907907	11396659	40	55451										
PCDH19	0	genome.wustl.edu	37	chrX	99661925	99661925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gtgatgaccggggtgttgtcGttgacgtcgaggatgatgac	17	6	0	5			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	X	99661925	99661925	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	silent	c.1671	p.N557	0.999	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	307	0	0	249	65	20.7	-	-	-	A	99661925	G	A	99661925	2	1	647	1	0	0	0	0	0	0	0	1	11587	1136	40	1		1	PCDH19	23	99661925	Silent	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09		99661925	55608635	41	55452										
TRPC5	0	genome.wustl.edu	37	chrX	111155832	111155832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	gagccttatagatgttcagtCgggagcgagagtggcgcagg	17	7	1	2			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	X	111155832	111155832	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.587	p.R196Q	0.997	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	200	2	0.99	152	62	28.84	-	-	-	T	111155832	C	T	111155832	3	4	647	1	0	0	0	0	1	0	0	0	16678	884	31	1	2370	1	TRPC5	23	111155832	Missense_Mutation	SNP	C	TCGA-C8-A1HG-01A-11D-A135-09	11493907	111155832	44114728	42	55453										
GPC3	0	genome.wustl.edu	37	chrX	132887698	132887698	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0697674418604651	3	0.969564350051006	0.794589774078478	1.92025862068966	0.61448275862069	1	1	0	cctgccatacagccttgcatGaccacattgcagtaaccgcc	7	16	0	1			TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba937e3d-30b7-4446-84fb-5f77831a4843	bfecb97d-fcf8-4508-8c7a-b2568f6e3972	X	132887698	132887698	G	T	SNP	GPC3	ENST00000406757	human	ensembl	69_37n	-1	known	nonsense	c.32	p.S11*	1.000	pfam_Glypican	pfam_Glypican	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPC3	HGNC	ENSG00000147257	950	0	0	753	304	28.73	-	-	-	T	132887698	G	T	132887698	4	4	647	1	0	0	0	0	0	1	0	0	6649	1277	45	2	996	2	GPC3	23	132887698	Nonsense_Mutation	SNP	G	TCGA-C8-A1HG-01A-11D-A135-09	21731866	132887698	22382862	43	55454										
PHC2	0	genome.wustl.edu	37	chr1	33795722	33795722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	cagactggctttgctggcccGacggcggttgtgggtcgcag	17	11	0	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	1	33795722	33795722	G	A	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.2098	p.R700W	0.979	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	481	0	0	282	52	15.48	-	-	-	A	33795722	G	A	33795722	3	1	648	1	0	0	0	0	1	0	0	0	11891	1057	37	1	493	1	PHC2	1	33795722	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09		33795722	215454899	1	55455										
TMEM59	0	genome.wustl.edu	37	chr1	54509100	54509100	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	agataaaaagtccatgaagaGgttatgaagctctgtgcgga	12	5	1	4			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	1	54509100	54509100	G	C	SNP	TMEM59	ENST00000234831	human	ensembl	69_37n	-1	known	silent	c.489	p.T163	1.000	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59,superfamily_Prot_inh_Kunz-m	-	no_errors	TMEM59	HGNC	ENSG00000116209	172	0	0	123	24	16.33	-	-	-	C	54509100	G	C	54509100	2	2	648	1	0	0	0	0	0	0	0	1	16280	987	35	4		4	TMEM59	1	54509100	Silent	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	20713378	54509100	194741521	2	55456										
DUSP10	0	genome.wustl.edu	37	chr1	221912365	221912365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gcatcactcggcttggttcaTtggtattctcatcataaact	7	10	4	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	1	221912365	221912365	T	C	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.722	p.N241S	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	245	0	0	213	92	30.16	-	-	-	C	221912365	T	C	221912365	3	2	648	1	0	0	0	0	1	0	0	0	4845	1493	52	5	738	5	DUSP10	1	221912365	Missense_Mutation	SNP	T	TCGA-C8-A1HI-01A-11D-A135-09	167403265	221912365	27338256	3	55457										
CNGA3	0	genome.wustl.edu	37	chr2	99013403	99013403	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ctcatggaggccctcaccgaGtaccccgaagccaagaaggc	11	15	2	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	2	99013403	99013403	G	T	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	missense	c.1770	p.E590D	0.713	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	115	1	0.86	51	20	28.17	-	-	-	T	99013403	G	T	99013403	3	4	648	1	0	0	0	0	1	0	0	0	3628	1020	36	4	1796	4	CNGA3	2	99013403	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09		99013403	144185970	4	55458										
NCKAP5	0	genome.wustl.edu	37	chr2	133539971	133539971	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	aacatgaccttttcttcgatTgtgggtgagaggggggcttc	14	7	1	2			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	2	133539971	133539971	T	C	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.4413	p.T1471	0.969	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	244	0	0	141	50	26.18	-	-	-	C	133539971	T	C	133539971	2	2	648	1	0	0	0	0	0	0	0	1	10295	1799	63	5		5	NCKAP5	2	133539971	Silent	SNP	T	TCGA-C8-A1HI-01A-11D-A135-09	34526568	133539971	109659402	5	55459										
RAPGEF4	0	genome.wustl.edu	37	chr2	173825508	173825508	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	acacctctcattgaacctcaCgttcctcttcgtcctgctaa	4	16	3	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	2	173825508	173825508	C	T	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	1	known	silent	c.558	p.H186	1.000	NULL	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	381	1	0.26	264	47	15.11	-	-	-	T	173825508	C	T	173825508	2	4	648	1	0	0	0	0	0	0	0	1	13129	535	19	1		1	RAPGEF4	2	173825508	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	40285537	173825508	69373865	6	55460										
IL20RB	0	genome.wustl.edu	37	chr3	136699172	136699172	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gagtctcattctgttgtctaGgctggagtgcagtggtgcaa	14	7	3	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	3	136699172	136699172	G	A	SNP	IL20RB	ENST00000309741	human	ensembl	69_37n	1	known	splice_site	c.1-1	e1-1	0.001	-	-	-	no_errors	IL20RB	HGNC	ENSG00000174564	67	0	0	59	21	25.93	-	-	-	A	136699172	G	A	136699172	5	1	648	1	0	0	0	0	0	0	1	0	7723	1015	35	4		4	IL20RB	3	136699172	Splice_Site	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09		136699172	61323258	7	55461										
CYB5R4	0	genome.wustl.edu	37	chr6	84644368	84644368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ggaagatgttactcatgataCgaggcttttctgtttgatgc	11	6	2	3			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	6	84644368	84644368	C	T	SNP	CYB5R4	ENST00000369681	human	ensembl	69_37n	1	known	missense	c.869	p.T290M	0.998	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Cyt_B5,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_domain,superfamily_Cyt_B5,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Cyt_B5,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5	-	no_errors	CYB5R4	HGNC	ENSG00000065615	450	0	0	313	83	20.96	-	-	-	T	84644368	C	T	84644368	3	4	648	1	0	0	0	0	1	0	0	0	4160	536	19	1	911	1	CYB5R4	6	84644368	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		84644368	86470699	8	55462										
LMTK2	0	genome.wustl.edu	37	chr7	97823713	97823713	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ctcagctccgagtcggaggaCgagaccgagcaccccgtgcc	13	16	1	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	7	97823713	97823713	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	silent	c.3936	p.D1312	0.373	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	126	0	0	57	26	31.33	-	-	-	T	97823713	C	T	97823713	2	4	648	1	0	0	0	0	0	0	0	1	8915	535	19	1		1	LMTK2	7	97823713	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		97823713	61314950	9	55463										
SERPINE1	0	genome.wustl.edu	37	chr7	100777176	100777176	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gcctcctggttctgcccaagTaagccaccccgctatctccc	7	19	2	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	7	100777176	100777176	T	C	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	splice_site	c.899+2	e4+2	1.000	-	-	-	no_errors	SERPINE1	HGNC	ENSG00000106366	145	0	0	89	34	27.2	-	-	-	C	100777176	T	C	100777176	5	2	648	1	0	0	0	0	0	0	1	0	14199	1652	57	5	915	5	SERPINE1	7	100777176	Splice_Site	SNP	T	TCGA-C8-A1HI-01A-11D-A135-09	2953463	100777176	58361487	10	55464										
AASS	0	genome.wustl.edu	37	chr7	121741712	121741712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	aaaaattctgactttcaagaGgctgtgtcgcgtctgataat	9	7	3	3			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	7	121741712	121741712	G	A	SNP	AASS	ENST00000393376	human	ensembl	69_37n	-1	known	missense	c.1301	p.P434L	1.000	NULL	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311	151	0	0	151	28	15.64	-	-	-	A	121741712	G	A	121741712	3	1	648	1	0	0	0	0	1	0	0	0	24	1000	35	4	1531	4	AASS	7	121741712	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	20964536	121741712	37396951	11	55465										
POTEA	0	genome.wustl.edu	37	chr8	43152259	43152259	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	catgtctttgacagcaaaaaGaggacagctctgataaaggt	10	7	2	3			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	8	43152259	43152259	G	T	SNP	POTEA	ENST00000522175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	594	0	0	350	174	32.95	-	-	-	T	43152259	G	T	43152259	1	4	648	0	1	0	0	0	0	0	0	0	12335	933	33	2		2	POTEA	8	43152259	RNA	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09		43152259	103211763	12	55466										
GATA3	0	genome.wustl.edu	37	chr10	8115952	8115953	+	Frame_Shift_Ins	INS	-	-	C													0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	agcctgtcctttggaccacaINSccacccctccagcatggtca							TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	10	8115952	8115953	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1301_1302	p.H435fs	1.000:0.946	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	159	0	0	103	13	11.21	-	-	-	C	8115953	-	C	8115952	7	5	648	1	0	1	1	0	0	0	0	0	6305	159	6	0	1319	0	GATA3	10	8115952	Frame_Shift_Ins	INS	-	TCGA-C8-A1HI-01A-11D-A135-09		8115952	127418795	13	55467										
TCF7L2	0	genome.wustl.edu	37	chr10	114910812	114910812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	tacacacgacgggcattccgCatccggccatagtcacacca	8	16	1	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	10	114910812	114910812	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	69_37n	1	known	missense	c.931	p.H311Y	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	360	0	0	213	57	21.03	-	-	-	T	114910812	C	T	114910812	3	4	648	1	0	0	0	0	1	0	0	0	15793	710	25	4	1110	4	TCF7L2	10	114910812	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	106794860	114910812	20623935	14	55468										
PITPNM1	0	genome.wustl.edu	37	chr11	67261512	67261512	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	aagtggatccacttgcccgaCagcggctgcgtcatgatgta	12	11	1	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	11	67261512	67261512	C	A	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	silent	c.2889	p.L963	0.996	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	59	0	0	33	7	17.5	-	-	-	A	67261512	C	A	67261512	2	1	648	1	0	0	0	0	0	0	0	1	12024	465	17	4		4	PITPNM1	11	67261512	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		67261512	67745004	15	55469										
MTERFD3	0	genome.wustl.edu	37	chr12	107371529	107371529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ctgtggtgttaattcaagaaCcattggcgtctctcttatct	8	9	4	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	12	107371529	107371529	C	T	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	missense	c.964	p.V322I	1.000	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	433	0	0	398	139	25.88	-	-	-	T	107371529	C	T	107371529	3	4	648	1	0	0	0	0	1	0	0	0	9993	507	18	4	197	4	MTERFD3	12	107371529	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		107371529	26480366	16	55470										
RBM19	0	genome.wustl.edu	37	chr12	114296632	114296632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gtgaggaagtccacaaagccGaagcctctgtgtgtgcctgt	13	10	1	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	12	114296632	114296632	G	T	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.2628	p.F876L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	300	1	0.33	234	89	27.47	-	-	-	T	114296632	G	T	114296632	3	4	648	1	0	0	0	0	1	0	0	0	13204	1049	37	3	266	3	RBM19	12	114296632	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	6925103	114296632	19555263	17	55471										
OXA1L	0	genome.wustl.edu	37	chr14	23239475	23239475	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ctctataaacctctcattctCcctgtgactcaggtgagcaa	6	13	4	2			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	14	23239475	23239475	C	G	SNP	OXA1L	ENST00000285848	human	ensembl	69_37n	1	known	silent	c.837	p.L279	0.951	pfam_Membrane_insertion_OxaA/YidC,tigrfam_Membrane_insertion_OxaA/YidC	pfam_Membrane_insertion_OxaA/YidC,tigrfam_Membrane_insertion_OxaA/YidC	-	no_errors	OXA1L	HGNC	ENSG00000155463	226	0	0	169	61	26.41	-	-	-	G	23239475	C	G	23239475	2	3	648	1	0	0	0	0	0	0	0	1	11401	842	30	2		2	OXA1L	14	23239475	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		23239475	84110065	18	55472										
ACIN1	0	genome.wustl.edu	37	chr14	23530619	23530619	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ttgtcccgatcccattcacgCtctgatcgagtccgctcccg	8	17	2	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	14	23530619	23530619	C	T	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	silent	c.3486	p.E1162	1.000	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	142	1	0.7	122	20	13.99	-	-	-	T	23530619	C	T	23530619	2	4	648	1	0	0	0	0	0	0	0	1	142	796	28	4		4	ACIN1	14	23530619	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	291144	23530619	83818921	19	55473										
AHSA1	0	genome.wustl.edu	37	chr14	77935581	77935581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	agacctttggctatggcgcaCgcttattttagggccagcgg	13	10	0	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	14	77935581	77935581	C	T	SNP	AHSA1	ENST00000216479	human	ensembl	69_37n	1	known	missense	c.1006	p.R336C	1.000	NULL	pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N	-	no_errors	AHSA1	HGNC	ENSG00000100591	205	0	0	109	53	32.72	-	-	-	T	77935581	C	T	77935581	3	4	648	1	0	0	0	0	1	0	0	0	418	536	19	1	1040	1	AHSA1	14	77935581	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	54404962	77935581	29413959	20	55474										
FOXN3	0	genome.wustl.edu	37	chr14	89878525	89878525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	cgtagggcatgtcagagtggGcaggggatgggggggtgtca	22	5	2	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	14	89878525	89878525	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	69_37n	-1	known	missense	c.296	p.A99V	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254	101	0	0	67	18	21.18	-	-	-	A	89878525	G	A	89878525	3	1	648	1	0	0	0	0	1	0	0	0	6069	1203	42	4	1200	4	FOXN3	14	89878525	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	11942944	89878525	17471015	21	55475										
KIAA1024	0	genome.wustl.edu	37	chr15	79749073	79749073	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	cgccgcttccctggacaggtTgcaggccctggctccgtact	12	16	0	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	15	79749073	79749073	T	C	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	missense	c.584	p.L195S	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	110	0	0	77	31	28.7	-	-	-	C	79749073	T	C	79749073	3	2	648	1	0	0	0	0	1	0	0	0	8257	1821	63	5	586	5	KIAA1024	15	79749073	Missense_Mutation	SNP	T	TCGA-C8-A1HI-01A-11D-A135-09		79749073	22782319	22	55476										
VPS33B	0	genome.wustl.edu	37	chr15	91551102	91551102	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	aagggcctctgcatttaccaGaaagtaatccctgaaaaatt	7	9	1	2			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	15	91551102	91551102	G	C	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	missense	c.496	p.L166V	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	248	0	0	179	25	12.25	-	-	-	C	91551102	G	C	91551102	3	2	648	1	0	0	0	0	1	0	0	0	17299	933	33	2	1425	2	VPS33B	15	91551102	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	11802029	91551102	10980290	23	55477										
XPO6	0	genome.wustl.edu	37	chr16	28167638	28167638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ctgacgccatctttctggccCggatgtcacagccaaatcgt	9	14	3	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	16	28167638	28167638	C	T	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.854	p.R285Q	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	279	0	0	184	185	49.87	-	-	-	T	28167638	C	T	28167638	3	4	648	1	0	0	0	0	1	0	0	0	17545	652	23	1	2595	1	XPO6	16	28167638	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		28167638	62187115	24	55478										
C17orf74	0	genome.wustl.edu	37	chr17	7329370	7329370	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	tgattgggctactcagaaaaGtaagtgtggctgctggagag	15	5	1	3			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	17	7329370	7329370	G	C	SNP	C17orf74	ENST00000333870	human	ensembl	69_37n	1	known	splice_site	c.196+1	e2+1	0.927	-	-	-	no_errors	C17orf74	HGNC	ENSG00000184560	147	0	0	84	16	16	-	-	-	C	7329370	G	C	7329370	5	2	648	1	0	0	0	0	0	0	1	0	1895	1043	36	4	203	4	C17orf74	17	7329370	Splice_Site	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09		7329370	73865840	25	55479										
KIF19	0	genome.wustl.edu	37	chr17	72350926	72350926	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gttcaaccatcacagctctcCcaccccaagacacacctcct	3	20	3	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	17	72350926	72350926	C	T	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	silent	c.2712	p.S904	0.054	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	169	0	0	415	60	12.63	-	-	-	T	72350926	C	T	72350926	2	4	648	1	0	0	0	0	0	0	0	1	8334	610	22	4		4	KIF19	17	72350926	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	65021556	72350926	8844284	26	55480										
C17orf28	0	genome.wustl.edu	37	chr17	72951890	72951890	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	tcaggctggtgcctcaccatCaaactggtactggatgatgt	11	10	3	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	17	72951890	72951890	C	G	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	missense	c.1633	p.D545H	1.000	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	240	0	0	559	123	18.01	-	-	-	G	72951890	C	G	72951890	3	3	648	1	0	0	0	0	1	0	0	0	1868	826	29	2	761	2	C17orf28	17	72951890	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	600964	72951890	8243320	27	55481										
C17orf28	0	genome.wustl.edu	37	chr17	72952020	72952020	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	tgcagcaacttgttggcagtCaccatggacaggctcttgag	12	10	2	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	17	72952020	72952020	C	T	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	silent	c.1503	p.V501	1.000	pfam_Dymeclin	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	262	0	0	606	127	17.33	-	-	-	T	72952020	C	T	72952020	2	4	648	1	0	0	0	0	0	0	0	1	1868	813	29	2		2	C17orf28	17	72952020	Silent	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	130	72952020	8243190	28	55482										
MRPL38	0	genome.wustl.edu	37	chr17	73898161	73898161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	ccgaagctcctggatggcctGtttccgttccagtagctgtt	11	12	0	0			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	17	73898161	73898161	G	C	SNP	MRPL38	ENST00000309352	human	ensembl	69_37n	-1	known	missense	c.322	p.Q108E	0.029	NULL	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	MRPL38	HGNC	ENSG00000204316	376	0	0	267	105	28.23	-	-	-	C	73898161	G	C	73898161	3	2	648	1	0	0	0	0	1	0	0	0	9873	1386	48	4	848	4	MRPL38	17	73898161	Missense_Mutation	SNP	G	TCGA-C8-A1HI-01A-11D-A135-09	946141	73898161	7297049	29	55483										
EMR2	0	genome.wustl.edu	37	chr19	14863285	14863285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gccgccaggaggaggcacagCagagagacgctcagccccat	14	14	1	2			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	19	14863285	14863285	C	T	SNP	EMR2	ENST00000392962	human	ensembl	69_37n	-1	known	missense	c.1099	p.A367T	0.997	NULL	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,prints_GPCR_2_CD97	-	no_errors	EMR2	HGNC	ENSG00000127507	296	0	0	151	79	34.35	-	-	-	T	14863285	C	T	14863285	3	4	648	1	0	0	0	0	1	0	0	0	5142	697	25	4	855	4	EMR2	19	14863285	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09		14863285	44265698	30	55484										
OR7A5	0	genome.wustl.edu	37	chr19	14938267	14938267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gtgtgagttgcgggtggcagCagaactaaggtacaccccta	14	9	0	2			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	19	14938267	14938267	C	A	SNP	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	missense	c.787	p.A263S	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	285	0	0	203	62	23.4	-	-	-	A	14938267	C	A	14938267	3	1	648	1	0	0	0	0	1	0	0	0	11289	710	25	4	176	4	OR7A5	19	14938267	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	74982	14938267	44190716	31	55485										
CYP2S1	0	genome.wustl.edu	37	chr19	41711922	41711922	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gaccccaacatcttcaagcaCccagaagagttcaacccaga	6	15	3	3			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	19	41711922	41711922	C	A	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	missense	c.1224	p.H408Q	0.012	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	256	0	0	181	51	21.7	-	-	-	A	41711922	C	A	41711922	3	1	648	1	0	0	0	0	1	0	0	0	4205	506	18	4	1254	4	CYP2S1	19	41711922	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	26773655	41711922	17417061	32	55486										
KLK4	0	genome.wustl.edu	37	chr19	51410279	51410279	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	gccaacttggccacacggggCttttccgaaagacacaaggc	11	13	0	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	19	51410279	51410279	C	A	SNP	KLK4	ENST00000324041	human	ensembl	69_37n	-1	known	missense	c.676	p.A226S	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749	146	0	0	98	26	20.8	-	-	-	A	51410279	C	A	51410279	3	1	648	1	0	0	0	0	1	0	0	0	8459	797	28	4	92	4	KLK4	19	51410279	Missense_Mutation	SNP	C	TCGA-C8-A1HI-01A-11D-A135-09	9698357	51410279	7718704	33	55487										
DEFB129	0	genome.wustl.edu	37	chr20	210400	210402	+	In_Frame_Del	DEL	AGA	AGA	-													0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	tcactggagctagaggaagcAgaagagcagtaatgtggatc							TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	20	210400	210402	AGA	-	DEL	DEFB129	ENST00000246105	human	ensembl	69_37n	1	known	in_frame_del	c.540_542	p.E182in_frame_del	0.002:0.000:0.000	NULL	NULL	-	no_errors	DEFB129	HGNC	ENSG00000125903	511	0	0	320	101	23.93	-	-	-	-	210402	AGA	-	210400	7	5	648	1	0	1	0	1	0	0	0	0	4450	175	7	0	546	0	DEFB129	20	210400	In_Frame_Del	DEL	AGA	TCGA-C8-A1HI-01A-11D-A135-09		210400	62815120	34	55488										
HCFC1	0	genome.wustl.edu	37	chrX	153215007	153215007	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0857142857142857	3	0.883975874444818	1.02521008403361	2.3921568627451	0.47843137254902	1	1	0	aggggcttcctgcttacattTctggagaggacatgggccgc	14	10	1	1			TCGA-C8-A1HI-01A-11D-A135-09	TCGA-C8-A1HI-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	75dc3bff-75da-4734-b930-a18fd3d1ebfe	6944644c-a43b-4a5b-b506-7427227f3eb0	X	153215007	153215007	T	C	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.6065	p.E2022G	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	337	0	0	204	101	33.01	-	-	-	C	153215007	T	C	153215007	3	2	648	1	0	0	0	0	1	0	0	0	7042	1783	62	5	50	5	HCFC1	23	153215007	Missense_Mutation	SNP	T	TCGA-C8-A1HI-01A-11D-A135-09		153215007	2055553	35	55489										
ARHGEF16	0	genome.wustl.edu	37	chr1	3397018	3397018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctatccgggttcagggtggcTctatggcgagaggctccggg	17	10	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	3397018	3397018	T	C	SNP	ARHGEF16	ENST00000378378	human	ensembl	69_37n	1	known	missense	c.1997	p.L666P	0.003	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762	14	0	0	8	6	42.86	-	-	-	C	3397018	T	C	3397018	3	2	649	1	0	0	0	0	1	0	0	0	901	1551	54	5	2051	5	ARHGEF16	1	3397018	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09		3397018	245853603	1	55490										
CLCN6	0	genome.wustl.edu	37	chr1	11898845	11898845	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gggagagtgtggcccaacacTagctttgaaccctgctcggc	13	12	0	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	11898845	11898845	T	G	SNP	CLCN6	ENST00000376496	human	ensembl	69_37n	1	novel	missense	c.2657	p.L886R	0.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	8	0	0	4	6	60	-	-	-	G	11898845	T	G	11898845	3	3	649	1	0	0	0	0	1	0	0	0	3497	1537	53	5		5	CLCN6	1	11898845	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	8501827	11898845	237351776	2	55491										
PABPC4	0	genome.wustl.edu	37	chr1	40030439	40030439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgtataatatggaggccttcCctgagcctgtaagacagaag	11	8	0	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	40030439	40030439	C	T	SNP	PABPC4	ENST00000372858	human	ensembl	69_37n	-1	known	missense	c.1252	p.G418R	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	33	0	0	46	24	34.29	-	-	-	T	40030439	C	T	40030439	3	4	649	1	0	0	0	0	1	0	0	0	11439	632	22	4	758	4	PABPC4	1	40030439	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	28131594	40030439	209220182	3	55492										
HOOK1	0	genome.wustl.edu	37	chr1	60294515	60294515	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gaggatgttggggacaactgGagaataaaggtatgcagaac	15	4	0	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	60294515	60294515	G	C	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.213	p.W71C	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	57	0	0	28	12	30	-	-	-	C	60294515	G	C	60294515	3	2	649	1	0	0	0	0	1	0	0	0	7333	1183	41	2	223	2	HOOK1	1	60294515	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	20264076	60294515	188956106	4	55493										
ADAM30	0	genome.wustl.edu	37	chr1	120436760	120436760	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tacagtttttgttttagattCttcctgttcagtttttgctt	6	6	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	120436760	120436760	C	T	SNP	ADAM30	ENST00000369400	human	ensembl	69_37n	-1	known	missense	c.2200	p.E734K	0.083	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249	194	0	0	31	15	32.61	-	-	-	T	120436760	C	T	120436760	3	4	649	1	0	0	0	0	1	0	0	0	248	922	32	2	176	2	ADAM30	1	120436760	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	60142245	120436760	128813861	5	55494										
CRNN	0	genome.wustl.edu	37	chr1	152382842	152382842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgtcctgctccacagtctggGtggcacctgcctgggtctga	13	13	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	152382842	152382842	G	T	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	missense	c.716	p.T239N	0.090	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	155	0	0	330	80	19.51	-	-	-	T	152382842	G	T	152382842	3	4	649	1	0	0	0	0	1	0	0	0	3922	1261	44	4	775	4	CRNN	1	152382842	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	31946082	152382842	96867779	6	55495										
UBQLN4	0	genome.wustl.edu	37	chr1	156018375	156018375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ataccctccagggatgctctCaaggttgctcagggcccggt	12	13	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	156018375	156018375	C	G	SNP	UBQLN4	ENST00000368309	human	ensembl	69_37n	-1	known	missense	c.817	p.E273Q	1.000	NULL	pfam_Ubiquitin,pfam_UBA/transl_elong_EF1B_N,pfam_SUMO,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803	64	0	0	220	51	18.82	-	-	-	G	156018375	C	G	156018375	3	3	649	1	0	0	0	0	1	0	0	0	16996	835	29	2	1016	2	UBQLN4	1	156018375	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	3635533	156018375	93232246	7	55496										
APOA1BP	0	genome.wustl.edu	37	chr1	156562240	156562240	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aataatggaggagatggtctGgtctgtgctcgacacctcaa	12	8	3	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	156562240	156562240	G	C	SNP	APOA1BP	ENST00000368235	human	ensembl	69_37n	1	known	silent	c.375	p.L125	1.000	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	-	no_errors	APOA1BP	HGNC	ENSG00000163382	61	0	0	188	29	13.36	-	-	-	C	156562240	G	C	156562240	2	2	649	1	0	0	0	0	0	0	0	1	783	1335	47	4		4	APOA1BP	1	156562240	Silent	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	543865	156562240	92688381	8	55497										
OR10J3	0	genome.wustl.edu	37	chr1	159284400	159284400	+	Frame_Shift_Del	DEL	A	A	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gctgccgcctgaagctggagAaaccttcaaagaggaactca							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	159284400	159284400	A	-	DEL	OR10J3	ENST00000332217	human	ensembl	69_37n	-1	known	frame_shift_del	c.50	p.F17fs	0.784	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266	36	0	0	55	8	12.7	-	-	-	-	159284400	A	-	159284400	7	5	649	1	0	1	0	1	0	0	0	0	10984	246	9	0	941	0	OR10J3	1	159284400	Frame_Shift_Del	DEL	A	TCGA-C8-A1HJ-01A-11D-A13L-09	2722160	159284400	89966221	9	55498										
CRP	0	genome.wustl.edu	37	chr1	159683842	159683842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gtggaggcacacagtgaaggCtttgagaggcttcgttaacg	15	7	0	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	159683842	159683842	C	A	SNP	CRP	ENST00000255030	human	ensembl	69_37n	-1	known	missense	c.148	p.A50S	0.386	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693	46	0	0	33	10	23.26	-	-	-	A	159683842	C	A	159683842	3	1	649	1	0	0	0	0	1	0	0	0	3925	797	28	4	530	4	CRP	1	159683842	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	399442	159683842	89566779	10	55499										
UAP1	0	genome.wustl.edu	37	chr1	162560143	162560143	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gtatatgaagtattgcgagaAgatgagttttccccactaaa	9	6	0	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	162560143	162560143	A	G	SNP	UAP1	ENST00000271469	human	ensembl	69_37n	1	known	silent	c.1200	p.E400	1.000	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143	75	0	0	48	16	25	-	-	-	G	162560143	A	G	162560143	2	3	649	1	0	0	0	0	0	0	0	1	16922	69	3	5		5	UAP1	1	162560143	Silent	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	2876301	162560143	86690478	11	55500										
NCF2	0	genome.wustl.edu	37	chr1	183525283	183525284	+	Frame_Shift_Del	DEL	TG	TG	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctccgagtgctttccaaatcTgtagttgcgcagtcttcaac							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	183525283	183525284	TG	-	DEL	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	frame_shift_del	c.1551_1550	p.T517fs	0.001:0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	56	0	0	52	37	41.57	-	-	-	-	183525284	TG	-	183525283	7	5	649	1	0	1	0	1	0	0	0	0	10289	1567	55	0	33	0	NCF2	1	183525283	Frame_Shift_Del	DEL	TG	TCGA-C8-A1HJ-01A-11D-A13L-09	20965140	183525283	65725338	12	55501										
USH2A	0	genome.wustl.edu	37	chr1	216173838	216173838	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgtacagtaggacccaggaaCtgtttgtacagcccacatgt	10	10	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	216173838	216173838	C	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.6392	p.S2131T	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	37	0	0	27	14	34.15	-	-	-	G	216173838	C	G	216173838	3	3	649	1	0	0	0	0	1	0	0	0	17133	565	20	4	9376	4	USH2A	1	216173838	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	32648555	216173838	33076783	13	55502										
ESRRG	0	genome.wustl.edu	37	chr1	216850481	216850481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgctaccccatagtggtaccCagaagcgatgtcaccacaca	8	14	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	216850481	216850481	C	A	SNP	ESRRG	ENST00000408911	human	ensembl	69_37n	-1	known	missense	c.409	p.G137W	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	44	0	0	45	38	45.78	-	-	-	A	216850481	C	A	216850481	3	1	649	1	0	0	0	0	1	0	0	0	5299	594	21	4	991	4	ESRRG	1	216850481	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	676643	216850481	32400140	14	55503										
OBSCN	0	genome.wustl.edu	37	chr1	228464918	228464918	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcgcagcccagggcgcctgcAggagcctcaccatttaccgg	12	16	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	228464918	228464918	A	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.6658	p.R2220	0.954	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	54	0	0	86	41	32.28	-	-	-	C	228464918	A	C	228464918	2	2	649	1	0	0	0	0	0	0	0	1	10885	179	7	5		5	OBSCN	1	228464918	Silent	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	11614437	228464918	20785703	15	55504										
KIF26B	0	genome.wustl.edu	37	chr1	245766051	245766051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ggttcctccaaagatgtttgCcttcgatgcagtttttccac	8	11	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	1	245766051	245766051	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.1523	p.A508V	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	67	0	0	12	32	71.11	-	-	-	T	245766051	C	T	245766051	3	4	649	1	0	0	0	0	1	0	0	0	8347	739	26	4	1545	4	KIF26B	1	245766051	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	17301133	245766051	3484570	16	55505										
ITSN2	0	genome.wustl.edu	37	chr2	24475287	24475287	+	Missense_Mutation	SNP	T	T	A													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	caatacttcctgtccaccacTctccatctttctgggtcacc							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	2	24475287	24475287	T	A	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.3047	p.E1016V	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	63	0	0	35	10	22.22	-	-	-	A	24475287	T	A	24475287	3	1	649	1	0	0	0	0	1	0	0	0	7981	1551	54	5	2161	5	ITSN2	2	24475287	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09		24475287	218724086	17	55506	438	2								
ITSN2	0	genome.wustl.edu	37	chr2	24475288	24475288	+	Nonsense_Mutation	SNP	C	C	A													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aatacttcctgtccaccactCtccatctttctgggtcacca							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	2	24475288	24475288	C	A	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	nonsense	c.3046	p.E1016*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	65	0	0	35	10	22.22	-	-	-	A	24475288	C	A	24475288	4	1	649	1	0	0	0	0	0	1	0	0	7981	922	32	2	2162	2	ITSN2	2	24475288	Nonsense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	1	24475288	218724085	18	55507	438	2								
CSRNP3	0	genome.wustl.edu	37	chr2	166535903	166535903	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gtcaaaaatggtaccctttcGctggtgccttacaccatgac	8	12	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	2	166535903	166535903	G	C	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	silent	c.1398	p.S466	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	31	0	0	28	17	37.78	-	-	-	C	166535903	G	C	166535903	2	2	649	1	0	0	0	0	0	0	0	1	3997	1074	38	3		3	CSRNP3	2	166535903	Silent	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	142060615	166535903	76663470	19	55508										
TTN	0	genome.wustl.edu	37	chr2	179583460	179583460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tggtacaggaagcactgccaGcatcatttgtaacgaggcaa	11	9	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	2	179583460	179583460	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.20735	p.A6912V	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	31	0	0	27	4	12.9	-	-	-	A	179583460	G	A	179583460	3	1	649	1	0	0	0	0	1	0	0	0	16832	971	34	4	80178	4	TTN	2	179583460	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	13047557	179583460	63615913	20	55509										
RAD18	0	genome.wustl.edu	37	chr3	8954040	8954040	+	Frame_Shift_Del	DEL	T	T	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tttccttttctgtttggtccTttgtaaaaaccattacctaa							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	3	8954040	8954040	T	-	DEL	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	frame_shift_del	c.983	p.K328fs	1.000	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	158	0	0	17	2	10.53	-	-	-	-	8954040	T	-	8954040	7	5	649	1	0	1	0	1	0	0	0	0	13063	1609	56	0	524	0	RAD18	3	8954040	Frame_Shift_Del	DEL	T	TCGA-C8-A1HJ-01A-11D-A13L-09		8954040	189068390	21	55510										
CDCP1	0	genome.wustl.edu	37	chr3	45159927	45159927	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tatttttctggatctctatgAcaaagtgattctcaggactc	7	8	3	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	3	45159927	45159927	A	G	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	missense	c.269	p.V90A	0.226	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	51	0	0	10	14	58.33	-	-	-	G	45159927	A	G	45159927	3	3	649	1	0	0	0	0	1	0	0	0	3122	275	10	5	2281	5	CDCP1	3	45159927	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	36205887	45159927	152862503	22	55511										
ITIH1	0	genome.wustl.edu	37	chr3	52814374	52814374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gaactggcagcccaaactatCaagaagtccttctcaggaaa	8	11	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	3	52814374	52814374	C	G	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	missense	c.663	p.I221M	0.999	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	36	0	0	5	10	62.5	-	-	-	G	52814374	C	G	52814374	3	3	649	1	0	0	0	0	1	0	0	0	7957	816	29	2	685	2	ITIH1	3	52814374	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	7654447	52814374	145208056	23	55512										
DZIP1L	0	genome.wustl.edu	37	chr3	137781680	137781680	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	accaggcagggaccctgggtTggccagagctctgtggacca	15	12	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	3	137781680	137781680	T	A	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	missense	c.2282	p.Q761L	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	46	0	0	60	26	30.23	-	-	-	A	137781680	T	A	137781680	3	1	649	1	0	0	0	0	1	0	0	0	4899	1812	63	5	25	5	DZIP1L	3	137781680	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	84967306	137781680	60240750	24	55513										
ATR	0	genome.wustl.edu	37	chr3	142285029	142285029	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cataagtggggaggatttcaTgatatgctggatgaaatcaa	12	4	2	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	3	142285029	142285029	T	G	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.226	p.M76L	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	30	0	0	71	16	18.39	-	-	-	G	142285029	T	G	142285029	3	3	649	1	0	0	0	0	1	0	0	0	1208	1464	51	5	7888	5	ATR	3	142285029	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	4503349	142285029	55737401	25	55514										
CLGN	0	genome.wustl.edu	37	chr4	141317060	141317060	+	Frame_Shift_Del	DEL	C	C	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ggaggtttccactcaccacaCccaatccgacatgctggatt							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	4	141317060	141317060	C	-	DEL	CLGN	ENST00000325617	human	ensembl	69_37n	-1	known	frame_shift_del	c.1062	p.C355fs	0.996	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132	53	0	0	17	2	10.53	-	-	-	-	141317060	C	-	141317060	7	5	649	1	0	1	0	1	0	0	0	0	3554	494	18	0	794	0	CLGN	4	141317060	Frame_Shift_Del	DEL	C	TCGA-C8-A1HJ-01A-11D-A13L-09		141317060	49837216	26	55515										
GRIA2	0	genome.wustl.edu	37	chr4	158233956	158233956	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	accgatcactttttcaagatCtggagttaaaaaaggaacgg	9	7	3	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	4	158233956	158233956	C	A	SNP	GRIA2	ENST00000264426	human	ensembl	69_37n	1	known	missense	c.595	p.L199M	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	35	0	0	8	17	68	-	-	-	A	158233956	C	A	158233956	3	1	649	1	0	0	0	0	1	0	0	0	6819	912	32	2	609	2	GRIA2	4	158233956	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	16916896	158233956	32920320	27	55516										
IPO11	0	genome.wustl.edu	37	chr5	61738838	61738838	+	Frame_Shift_Del	DEL	T	T	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	caccaaccacactttggataTaaatgtaaggtggcttgctg							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	5	61738838	61738838	T	-	DEL	IPO11	ENST00000409296	human	ensembl	69_37n	1	known	frame_shift_del	c.287	p.I96fs	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200	73	0	0	17	2	10.53	-	-	-	-	61738838	T	-	61738838	7	5	649	1	0	1	0	1	0	0	0	0	7847	1406	49	0	297	0	IPO11	5	61738838	Frame_Shift_Del	DEL	T	TCGA-C8-A1HJ-01A-11D-A13L-09		61738838	119176422	28	55517										
CATSPER3	0	genome.wustl.edu	37	chr5	134346079	134346079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctagaaaaatgctgactgcaCaagtttcagtgagctggtgg	12	7	1	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	5	134346079	134346079	C	T	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	missense	c.953	p.T318I	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	49	0	0	22	4	15.38	-	-	-	T	134346079	C	T	134346079	3	4	649	1	0	0	0	0	1	0	0	0	2714	478	17	4	979	4	CATSPER3	5	134346079	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	72607241	134346079	46569181	29	55518										
GPR151	0	genome.wustl.edu	37	chr5	145895299	145895299	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gccaccacaacgattgtcagGctcttggctgccatgcatgt	10	13	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	5	145895299	145895299	G	T	SNP	GPR151	ENST00000311104	human	ensembl	69_37n	-1	known	missense	c.378	p.S126R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR151	HGNC	ENSG00000173250	77	0	0	46	38	45.24	-	-	-	T	145895299	G	T	145895299	3	4	649	1	0	0	0	0	1	0	0	0	6707	1194	42	4	885	4	GPR151	5	145895299	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	11549220	145895299	35019961	30	55519										
CYFIP2	0	genome.wustl.edu	37	chr5	156752564	156752564	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tggagttaaccatgggccgaCgaatccagttccccatcgag	11	12	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	5	156752564	156752564	C	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.1975	p.R659G	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	79	0	0	31	45	59.21	-	-	-	G	156752564	C	G	156752564	3	3	649	1	0	0	0	0	1	0	0	0	4169	528	19	3	1962	3	CYFIP2	5	156752564	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	10857265	156752564	24162696	31	55520										
RUFY1	0	genome.wustl.edu	37	chr5	178994482	178994482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gacagctgtgggaagaggccGagcgtggctttatcttgcac	15	9	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	5	178994482	178994482	G	A	SNP	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	missense	c.623	p.R208Q	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	70	0	0	27	17	38.64	-	-	-	A	178994482	G	A	178994482	3	1	649	1	0	0	0	0	1	0	0	0	13824	1058	37	1	637	1	RUFY1	5	178994482	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	22241918	178994482	1920778	32	55521										
SYNGAP1	0	genome.wustl.edu	37	chr6	33409034	33409034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	atgcagcagtttttgtatgaGatctccaatctggacacgct	9	9	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	33409034	33409034	G	C	SNP	SYNGAP1	ENST00000418600	human	ensembl	69_37n	1	known	missense	c.1998	p.E666D	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283	98	0	0	118	30	20.27	-	-	-	C	33409034	G	C	33409034	3	2	649	1	0	0	0	0	1	0	0	0	15539	933	33	2	2044	2	SYNGAP1	6	33409034	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		33409034	137706033	33	55522										
CPNE5	0	genome.wustl.edu	37	chr6	36710197	36710197	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gatctctgccagcacgtctcGggccaggcgggccatgctca	13	15	3	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	36710197	36710197	G	C	SNP	CPNE5	ENST00000244751	human	ensembl	69_37n	-1	known	missense	c.1630	p.R544G	1.000	pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772	25	0	0	123	29	19.08	-	-	-	C	36710197	G	C	36710197	3	2	649	1	0	0	0	0	1	0	0	0	3845	1124	39	3	155	3	CPNE5	6	36710197	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	3301163	36710197	134404870	34	55523										
FGD2	0	genome.wustl.edu	37	chr6	36982782	36982782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcctcaagatctccttccgcCgcaacgaccccatggagcgc	8	18	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	36982782	36982782	C	T	SNP	FGD2	ENST00000274963	human	ensembl	69_37n	1	known	missense	c.997	p.R333C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	25	0	0	93	21	18.42	-	-	-	T	36982782	C	T	36982782	3	4	649	1	0	0	0	0	1	0	0	0	5879	652	23	1	1027	1	FGD2	6	36982782	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	272585	36982782	134132285	35	55524										
ENPP5	0	genome.wustl.edu	37	chr6	46135385	46135385	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcaatatctgaaatgacaggCcccatgagcggactgtcagg	11	10	3	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	46135385	46135385	C	A	SNP	ENPP5	ENST00000230565	human	ensembl	69_37n	-1	known	silent	c.615	p.G205	0.027	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796	22	0	0	19	14	42.42	-	-	-	A	46135385	C	A	46135385	2	1	649	1	0	0	0	0	0	0	0	1	5170	726	26	4		4	ENPP5	6	46135385	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	9152603	46135385	124979682	36	55525										
RCAN2	0	genome.wustl.edu	37	chr6	46216493	46216493	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	agctttaattttttccctctGaattgggtttcatgaagctc	7	8	2	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	46216493	46216493	G	C	SNP	RCAN2	ENST00000306764	human	ensembl	69_37n	-1	known	missense	c.366	p.F122L	1.000	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN2	HGNC	ENSG00000172348	91	0	0	42	8	16	-	-	-	C	46216493	G	C	46216493	3	2	649	1	0	0	0	0	1	0	0	0	13252	1281	45	2	377	2	RCAN2	6	46216493	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	81108	46216493	124898574	37	55526										
CDK19	0	genome.wustl.edu	37	chr6	110943369	110943369	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	atctggcagccggcaaatacActaaaaatcattaaaaagaa	6	8	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	110943369	110943369	A	C	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.1032	p.D344E	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	85	0	0	33	14	29.79	-	-	-	C	110943369	A	C	110943369	3	2	649	1	0	0	0	0	1	0	0	0	3164	173	6	5	488	5	CDK19	6	110943369	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	64726876	110943369	60171698	38	55527										
REV3L	0	genome.wustl.edu	37	chr6	111695002	111695002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cagactgtccttcaccaaatGctgaaggtgttgacacattt	8	10	1	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	111695002	111695002	G	A	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.4556	p.A1519V	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	91	0	0	22	10	31.25	-	-	-	A	111695002	G	A	111695002	3	1	649	1	0	0	0	0	1	0	0	0	13323	1319	46	4	4916	4	REV3L	6	111695002	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	751633	111695002	59420065	39	55528										
PACRG	0	genome.wustl.edu	37	chr6	163483345	163483345	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ccttccacagctcattatccCgataaaaagtaagtgaaccg	6	12	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	163483345	163483345	C	T	SNP	PACRG	ENST00000542936	human	ensembl	69_37n	1	putative	nonsense	c.28	p.R10*	0.904	pfam_Parkin_co-regulated_protein	pfam_Parkin_co-regulated_protein	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PACRG	HGNC	ENSG00000112530	32	0	0	28	14	33.33	-	-	-	T	163483345	C	T	163483345	4	4	649	1	0	0	0	0	0	1	0	0	11443	652	23	1	465	1	PACRG	6	163483345	Nonsense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	51788343	163483345	7631722	40	55529										
RPS6KA2	0	genome.wustl.edu	37	chr6	166833389	166833389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ccctgccagcatggtgtacaAcaggatccccaaactccaga	8	15	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	6	166833389	166833389	A	C	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	missense	c.1876	p.L626V	0.363	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	36	0	0	87	34	28.1	-	-	-	C	166833389	A	C	166833389	3	2	649	1	0	0	0	0	1	0	0	0	13737	40	2	5	416	5	RPS6KA2	6	166833389	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	3350044	166833389	4281678	41	55530										
TMEM209	0	genome.wustl.edu	37	chr7	129841839	129841839	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gggcgaacgagaagggctatAactcaacacactctgaccct	10	12	2	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	7	129841839	129841839	A	T	SNP	TMEM209	ENST00000397622	human	ensembl	69_37n	-1	known	missense	c.424	p.Y142N	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842	27	0	0	24	17	41.46	-	-	-	T	129841839	A	T	129841839	3	4	649	1	0	0	0	0	1	0	0	0	16229	362	13	5	1305	5	TMEM209	7	129841839	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		129841839	29296824	42	55531										
PKHD1L1	0	genome.wustl.edu	37	chr8	110457789	110457789	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	atggtcgatgttaaaatcttTgttaatacaattgcttatcc	6	6	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	8	110457789	110457789	T	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.5691	p.F1897L	0.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	31	0	0	24	15	38.46	-	-	-	G	110457789	T	G	110457789	3	3	649	1	0	0	0	0	1	0	0	0	12046	1809	63	5	5841	5	PKHD1L1	8	110457789	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09		110457789	35906233	43	55532										
PKHD1L1	0	genome.wustl.edu	37	chr8	110509244	110509244	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tggccttcctggatgttctcTtatacaaggatttaccattt	7	9	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	8	110509244	110509244	T	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.10424	p.L3475H	0.931	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	130	0	0	56	10	15.15	-	-	-	A	110509244	T	A	110509244	3	1	649	1	0	0	0	0	1	0	0	0	12046	1609	56	5	10678	5	PKHD1L1	8	110509244	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	51455	110509244	35854778	44	55533										
ENPP2	0	genome.wustl.edu	37	chr8	120596251	120596251	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cgtggtctccctggaaaaagCattttcctgatggtttctta	9	9	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	8	120596251	120596251	C	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1562	p.C521F	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	72	0	0	92	23	20	-	-	-	A	120596251	C	A	120596251	3	1	649	1	0	0	0	0	1	0	0	0	5167	710	25	4	1304	4	ENPP2	8	120596251	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	10087007	120596251	25767771	45	55534										
FAM83A	0	genome.wustl.edu	37	chr8	124195570	124195570	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cgccgctgcatcacccggacTagccaggtaccgatggcaaa	11	15	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	8	124195570	124195570	T	G	SNP	FAM83A	ENST00000318462	human	ensembl	69_37n	1	known	silent	c.474	p.T158	0.999	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689	9	0	0	17	10	37.04	-	-	-	G	124195570	T	G	124195570	2	3	649	1	0	0	0	0	0	0	0	1	5678	1509	53	5		5	FAM83A	8	124195570	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	3599319	124195570	22168452	46	55535										
GSDMC	0	genome.wustl.edu	37	chr8	130760832	130760832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cttctacatcccaggttgacCtggggttatccagctccatc	8	14	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	8	130760832	130760832	C	A	SNP	GSDMC	ENST00000276708	human	ensembl	69_37n	-1	known	missense	c.1442	p.R481M	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	44	0	0	73	30	29.13	-	-	-	A	130760832	C	A	130760832	3	1	649	1	0	0	0	0	1	0	0	0	6869	681	24	4	88	4	GSDMC	8	130760832	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	6565262	130760832	15603190	47	55536										
IL11RA	0	genome.wustl.edu	37	chr9	34660531	34660531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctctgtggagcaggtagctgTgctggcgtctttgggaatcc	15	9	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	9	34660531	34660531	T	C	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	missense	c.1103	p.V368A	0.880	NULL	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	84	0	0	93	82	46.86	-	-	-	C	34660531	T	C	34660531	3	2	649	1	0	0	0	0	1	0	0	0	7677	1696	59	5	1141	5	IL11RA	9	34660531	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09		34660531	106552900	48	55537										
SFMBT2	0	genome.wustl.edu	37	chr10	7290590	7290590	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	catcccaactgtgaagaaatGgcttcgcaaatctgcgtgat	9	10	1	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	7290590	7290590	G	C	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.892	p.H298D	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	56	0	0	43	45	51.14	-	-	-	C	7290590	G	C	7290590	3	2	649	1	0	0	0	0	1	0	0	0	14246	1348	47	4	1848	4	SFMBT2	10	7290590	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		7290590	128244157	49	55538										
CHAT	0	genome.wustl.edu	37	chr10	50863479	50863479	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gatgccatccgtgcccagacTgcatacacagtcatggtgag	11	12	1	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	50863479	50863479	T	G	SNP	CHAT	ENST00000337653	human	ensembl	69_37n	1	known	silent	c.1824	p.T608	0.001	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748	26	0	0	19	16	45.71	-	-	-	G	50863479	T	G	50863479	2	3	649	1	0	0	0	0	0	0	0	1	3342	1567	55	5		5	CHAT	10	50863479	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	43572889	50863479	84671268	50	55539										
HK1	0	genome.wustl.edu	37	chr10	71144575	71144575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tttgatcacattgtctcctgCatctctgacttcttggacta	6	11	4	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	71144575	71144575	C	T	SNP	HK1	ENST00000448642	human	ensembl	69_37n	1	known	silent	c.1848	p.C616	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515	58	0	0	24	29	54.72	-	-	-	T	71144575	C	T	71144575	2	4	649	1	0	0	0	0	0	0	0	1	7241	718	25	4		4	HK1	10	71144575	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	20281096	71144575	64390172	51	55540										
IFIT1	0	genome.wustl.edu	37	chr10	91162494	91162496	+	In_Frame_Del	DEL	AAA	AAA	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gccttgctgaagtgtggaggAaaaaattatgaacgggccaa							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	91162494	91162496	AAA	-	DEL	IFIT1	ENST00000371804	human	ensembl	69_37n	1	known	in_frame_del	c.462_464	p.K155in_frame_del	0.024:0.006:0.005	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	29	0	0	11	7	36.84	-	-	-	-	91162496	AAA	-	91162494	7	5	649	1	0	1	0	1	0	0	0	0	7575	233	9	0	468	0	IFIT1	10	91162494	In_Frame_Del	DEL	AAA	TCGA-C8-A1HJ-01A-11D-A13L-09	20017919	91162494	44372253	52	55541										
ZFYVE27	0	genome.wustl.edu	37	chr10	99508101	99508101	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	taccgcgtgctgcactgggaGaaccccgtcgtgtcctcaca	11	15	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	99508101	99508101	G	C	SNP	ZFYVE27	ENST00000356257	human	ensembl	69_37n	1	known	missense	c.531	p.E177D	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE27	HGNC	ENSG00000155256	23	0	0	51	19	27.14	-	-	-	C	99508101	G	C	99508101	3	2	649	1	0	0	0	0	1	0	0	0	17765	933	33	2	545	2	ZFYVE27	10	99508101	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	8345607	99508101	36026646	53	55542										
FAM160B1	0	genome.wustl.edu	37	chr10	116595973	116595973	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ttgtgtgtgcgaagctgaaaCaggacccctacctggttaac	11	10	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	10	116595973	116595973	C	G	SNP	FAM160B1	ENST00000369248	human	ensembl	69_37n	1	known	missense	c.490	p.Q164E	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553	49	0	0	26	5	16.13	-	-	-	G	116595973	C	G	116595973	3	3	649	1	0	0	0	0	1	0	0	0	5510	479	17	4	508	4	FAM160B1	10	116595973	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	17087872	116595973	18938774	54	55543										
MUC2	0	genome.wustl.edu	37	chr11	1086332	1086332	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ccacatggtggtgagcagcgAgctggacttcgggaacagct	15	10	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	1086332	1086332	A	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.3041	p.E1014V	0.013	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	23	0	0	10	27	72.97	-	-	-	T	1086332	A	T	1086332	3	4	649	1	0	0	0	0	1	0	0	0	10047	304	11	5	3131	5	MUC2	11	1086332	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		1086332	133920184	55	55544										
BRSK2	0	genome.wustl.edu	37	chr11	1459590	1459590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	agcacccccacgtcctaaagCtgcacgacgtttatgaaaac	7	14	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	1459590	1459590	C	A	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	missense	c.379	p.L127M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	32	0	0	15	22	59.46	-	-	-	A	1459590	C	A	1459590	3	1	649	1	0	0	0	0	1	0	0	0	1532	796	28	4	251	4	BRSK2	11	1459590	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	373258	1459590	133546926	56	55545										
RBMXL2	0	genome.wustl.edu	37	chr11	7110465	7110465	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ggccgcatcgtcgaggtgctCctgatgaaagaccgagaaac	13	11	0	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	7110465	7110465	C	G	SNP	RBMXL2	ENST00000306904	human	ensembl	69_37n	1	known	silent	c.114	p.L38	0.008	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748	18	0	0	13	18	58.06	-	-	-	G	7110465	C	G	7110465	2	3	649	1	0	0	0	0	0	0	0	1	13237	842	30	2		2	RBMXL2	11	7110465	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	5650875	7110465	127896051	57	55546										
LRRC4C	0	genome.wustl.edu	37	chr11	40137802	40137802	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ccctgttaaacctaggacctAtcattatctgctgtggatgt	8	10	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	40137802	40137802	A	G	SNP	LRRC4C	ENST00000527150	human	ensembl	69_37n	-1	known	missense	c.41	p.I14T	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	LRRC4C	HGNC	ENSG00000148948	73	0	0	41	37	47.44	-	-	-	G	40137802	A	G	40137802	3	3	649	1	0	0	0	0	1	0	0	0	9074	449	16	5	1885	5	LRRC4C	11	40137802	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	33027337	40137802	94868714	58	55547										
OR4C15	0	genome.wustl.edu	37	chr11	55321992	55321992	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tttgtcctcctgggactttcAcagaatccaaatgttcagga	8	10	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	55321992	55321992	A	G	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	silent	c.210	p.S70	0.041	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	48	0	0	20	10	33.33	-	-	-	G	55321992	A	G	55321992	2	3	649	1	0	0	0	0	0	0	0	1	11121	146	6	5		5	OR4C15	11	55321992	Silent	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	15184190	55321992	79684524	59	55548										
SCGB2A1	0	genome.wustl.edu	37	chr11	61977971	61977971	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aatacaaagagcttcttcaaGagttcatagacagtgatgcc	8	8	3	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	61977971	61977971	G	C	SNP	SCGB2A1	ENST00000244930	human	ensembl	69_37n	1	known	missense	c.142	p.E48Q	0.000	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB2A1	HGNC	ENSG00000124939	53	0	0	11	7	38.89	-	-	-	C	61977971	G	C	61977971	3	2	649	1	0	0	0	0	1	0	0	0	13986	943	33	2	148	2	SCGB2A1	11	61977971	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	6655979	61977971	73028545	60	55549										
ZBTB3	0	genome.wustl.edu	37	chr11	62520833	62520833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	catgtgcaagtagctggcagCtgccagcacatcctccacag	10	14	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	62520833	62520833	C	G	SNP	ZBTB3	ENST00000394807	human	ensembl	69_37n	-1	known	missense	c.454	p.A152P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	26	0	0	8	6	42.86	-	-	-	G	62520833	C	G	62520833	3	3	649	1	0	0	0	0	1	0	0	0	17630	797	28	4	1274	4	ZBTB3	11	62520833	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	542862	62520833	72485683	61	55550										
FAT3	0	genome.wustl.edu	37	chr11	92577795	92577795	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgtcaggaacagcattgtgaGcaaggcttgtcactcgattc	11	9	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	92577795	92577795	G	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.11262	p.E3754D	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	73	0	0	46	124	72.94	-	-	-	C	92577795	G	C	92577795	3	2	649	1	0	0	0	0	1	0	0	0	5737	962	34	4	11332	4	FAT3	11	92577795	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	30056962	92577795	42428721	62	55551										
CCDC82	0	genome.wustl.edu	37	chr11	96104224	96104224	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	agataccaagctctctagacGaggctgaacaaagcggttat	10	9	1	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	96104224	96104224	G	C	SNP	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	missense	c.1162	p.R388G	1.000	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	45	0	0	25	4	13.79	-	-	-	C	96104224	G	C	96104224	3	2	649	1	0	0	0	0	1	0	0	0	2883	1058	37	3	488	3	CCDC82	11	96104224	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	3526429	96104224	38902292	63	55552										
KCNJ5	0	genome.wustl.edu	37	chr11	128781958	128781958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcaacgtgggctttgacacgGgcgacgaccgcctcttcctt	11	14	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	11	128781958	128781958	G	A	SNP	KCNJ5	ENST00000529694	human	ensembl	69_37n	1	known	missense	c.790	p.G264S	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457	42	0	0	32	4	11.11	-	-	-	A	128781958	G	A	128781958	3	1	649	1	0	0	0	0	1	0	0	0	8108	1232	43	4	792	4	KCNJ5	11	128781958	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	32677734	128781958	6224558	64	55553										
KIAA1467	0	genome.wustl.edu	37	chr12	13208585	13208585	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aacctgcagaagaatggaggGgtcaaaaatgggaagagtcc	14	6	1	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	12	13208585	13208585	G	T	SNP	KIAA1467	ENST00000197268	human	ensembl	69_37n	1	known	silent	c.138	p.G46	0.990	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	KIAA1467	HGNC	ENSG00000084444	23	0	0	18	9	33.33	-	-	-	T	13208585	G	T	13208585	2	4	649	1	0	0	0	0	0	0	0	1	8287	1219	43	4		4	KIAA1467	12	13208585	Silent	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		13208585	120643310	65	55554										
WBP11	0	genome.wustl.edu	37	chr12	14946765	14946765	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ttgtcggtgtcactgtcatcAgtactgtcatcatgcttatc	8	10	5	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	12	14946765	14946765	A	C	SNP	WBP11	ENST00000535638	human	ensembl	69_37n	-1	known	missense	c.479	p.L160R	1.000	NULL	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463	72	0	0	19	47	71.21	-	-	-	C	14946765	A	C	14946765	3	2	649	1	0	0	0	0	1	0	0	0	17355	175	7	5	1132	5	WBP11	12	14946765	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	1738180	14946765	118905130	66	55555										
PTGES3	0	genome.wustl.edu	37	chr12	57065556	57065556	+	Frame_Shift_Del	DEL	T	T	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgccctttcttttgttaaccTtggccatgactggccagatt							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	12	57065556	57065556	T	-	DEL	PTGES3	ENST00000262033	human	ensembl	69_37n	-1	known	frame_shift_del	c.262	p.R88fs	0.998	superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTGES3	HGNC	ENSG00000110958	47	0	0	13	2	13.33	-	-	-	-	57065556	T	-	57065556	7	5	649	1	0	1	0	1	0	0	0	0	12829	1608	56	0	240	0	PTGES3	12	57065556	Frame_Shift_Del	DEL	T	TCGA-C8-A1HJ-01A-11D-A13L-09	42118791	57065556	76786339	67	55556										
UTP20	0	genome.wustl.edu	37	chr12	101693781	101693781	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aaagagaaggtgataccactCgtcaccggcttcatagaggc	11	10	2	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	12	101693781	101693781	C	G	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	silent	c.1617	p.L539	0.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	38	0	0	12	17	58.62	-	-	-	G	101693781	C	G	101693781	2	3	649	1	0	0	0	0	0	0	0	1	17196	871	31	3		3	UTP20	12	101693781	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	44628225	101693781	32158114	68	55557										
RPLP0	0	genome.wustl.edu	37	chr12	120634624	120634624	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcgtccgactcctccgactcTtccttggcttcaaccttagc	6	17	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	12	120634624	120634624	T	C	SNP	RPLP0	ENST00000228306	human	ensembl	69_37n	-1	known	silent	c.906	p.E302	0.999	pfam_Ribosomal_60S	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S	-	no_errors	RPLP0	HGNC	ENSG00000089157	41	0	0	9	28	75.68	-	-	-	C	120634624	T	C	120634624	2	2	649	1	0	0	0	0	0	0	0	1	13690	1606	56	5		5	RPLP0	12	120634624	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	18940843	120634624	13217271	69	55558										
COG3	0	genome.wustl.edu	37	chr13	46103952	46103952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcaatgaccttgcggcaactGcatataagacaataaaaaca	6	9	1	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	13	46103952	46103952	G	A	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	missense	c.2257	p.A753T	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	43	0	0	16	4	20	-	-	-	A	46103952	G	A	46103952	3	1	649	1	0	0	0	0	1	0	0	0	3689	1319	46	4	2339	4	COG3	13	46103952	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		46103952	69065926	70	55559										
ZC3H13	0	genome.wustl.edu	37	chr13	46543510	46543510	+	Frame_Shift_Del	DEL	G	G	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgctgtatcttcttttttctGggagtcctctagaataccat							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	13	46543510	46543510	G	-	DEL	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	frame_shift_del	c.3169	p.Q1057fs	0.922	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	75	0	0	17	2	10.53	-	-	-	-	46543510	G	-	46543510	7	5	649	1	0	1	0	1	0	0	0	0	17661	1357	47	0	1541	0	ZC3H13	13	46543510	Frame_Shift_Del	DEL	G	TCGA-C8-A1HJ-01A-11D-A13L-09	439558	46543510	68626368	71	55560										
RNF219	0	genome.wustl.edu	37	chr13	79213121	79213121	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cctgcaccaaggttaaaggaTccagaatagttttgatctgt	9	8	1	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	13	79213121	79213121	T	A	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.386	p.D129V	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	70	0	0	21	10	32.26	-	-	-	A	79213121	T	A	79213121	3	1	649	1	0	0	0	0	1	0	0	0	13568	1435	50	5	1806	5	RNF219	13	79213121	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	32669611	79213121	35956757	72	55561										
PROZ	0	genome.wustl.edu	37	chr13	113826030	113826030	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tggagctggagtggcccatcCagtgcccaggtgcggggctc	17	12	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	13	113826030	113826030	C	T	SNP	PROZ	ENST00000375547	human	ensembl	69_37n	1	known	nonsense	c.814	p.Q272*	0.001	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Peptidase_S1_S6,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROZ	HGNC	ENSG00000126231	18	0	0	26	18	40	-	-	-	T	113826030	C	T	113826030	4	4	649	1	0	0	0	0	0	1	0	0	12643	595	21	4	844	4	PROZ	13	113826030	Nonsense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	34612909	113826030	1343848	73	55562										
LAMP1	0	genome.wustl.edu	37	chr13	113965104	113965104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gtgttagtggcacccaggtcCacatgaacaacgtgaccgta	11	11	0	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	13	113965104	113965104	C	A	SNP	LAMP1	ENST00000332556	human	ensembl	69_37n	1	known	missense	c.484	p.H162N	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP1	HGNC	ENSG00000185896	60	0	0	69	23	25	-	-	-	A	113965104	C	A	113965104	3	1	649	1	0	0	0	0	1	0	0	0	8671	594	21	4	498	4	LAMP1	13	113965104	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	139074	113965104	1204774	74	55563										
HECTD1	0	genome.wustl.edu	37	chr14	31582339	31582339	+	Frame_Shift_Del	DEL	T	T	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctgtaatatttttgttgtaaTttttttgctagtgaattcat							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	14	31582339	31582339	T	-	DEL	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	frame_shift_del	c.6121	p.I2041fs	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	123	0	0	4	2	33.33	-	-	-	-	31582339	T	-	31582339	7	5	649	1	0	1	0	1	0	0	0	0	7090	1493	52	0	1751	0	HECTD1	14	31582339	Frame_Shift_Del	DEL	T	TCGA-C8-A1HJ-01A-11D-A13L-09		31582339	75767201	75	55564										
TRPM1	0	genome.wustl.edu	37	chr15	31360098	31360098	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ttacctgtgctgacacccccGgtgaagatccaggccccggt	11	15	0	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	15	31360098	31360098	G	T	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	silent	c.528	p.T176	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	29	0	0	28	4	12.5	-	-	-	T	31360098	G	T	31360098	2	4	649	1	0	0	0	0	0	0	0	1	16681	1103	39	3		3	TRPM1	15	31360098	Silent	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		31360098	71171294	76	55565										
AQR	0	genome.wustl.edu	37	chr15	35202492	35202492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tcgcgcccaaccaccaaacaCtacaccgccatattcagatt	4	17	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	15	35202492	35202492	C	T	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	missense	c.1507	p.V503M	0.998	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	48	0	0	11	16	59.26	-	-	-	T	35202492	C	T	35202492	3	4	649	1	0	0	0	0	1	0	0	0	837	565	20	4	3026	4	AQR	15	35202492	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	3842394	35202492	67328900	77	55566										
CGNL1	0	genome.wustl.edu	37	chr15	57816868	57816868	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gagaaaaaccgcagggagctCgcagaaatgcaaagacagtt	12	8	0	3			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	15	57816868	57816868	C	G	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	1	known	silent	c.2958	p.L986	0.725	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	37	0	0	13	11	45.83	-	-	-	G	57816868	C	G	57816868	2	3	649	1	0	0	0	0	0	0	0	1	3333	871	31	3		3	CGNL1	15	57816868	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	22614376	57816868	44714524	78	55567										
OTOA	0	genome.wustl.edu	37	chr16	21728342	21728342	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gattcaactctacagtcctgAaggataaggaacttggaagg	11	7	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	16	21728342	21728342	A	G	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.1645	p.K549E	0.906	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	44	0	0	10	9	47.37	-	-	-	G	21728342	A	G	21728342	3	3	649	1	0	0	0	0	1	0	0	0	11375	247	9	5	1703	5	OTOA	16	21728342	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		21728342	68626411	79	55568										
HS3ST4	0	genome.wustl.edu	37	chr16	26147267	26147267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cccagatcctctttgtcagtGgtgagcgactcattgtggac	11	11	3	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	16	26147267	26147267	G	C	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	missense	c.1069	p.G357R	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	33	0	0	23	19	45.24	-	-	-	C	26147267	G	C	26147267	3	2	649	1	0	0	0	0	1	0	0	0	7418	1348	47	4	1075	4	HS3ST4	16	26147267	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	4418925	26147267	64207486	80	55569										
ZNF423	0	genome.wustl.edu	37	chr16	49671432	49671432	+	Frame_Shift_Del	DEL	C	C	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gagactctagtttggcactgCccacactgcagtgggcctgc							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	16	49671432	49671432	C	-	DEL	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	frame_shift_del	c.1631	p.G544fs	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	62	0	0	57	41	41	-	-	-	-	49671432	C	-	49671432	7	5	649	1	0	1	0	1	0	0	0	0	17994	739	26	0	2243	0	ZNF423	16	49671432	Frame_Shift_Del	DEL	C	TCGA-C8-A1HJ-01A-11D-A13L-09	23524165	49671432	40683321	81	55570										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	59	0	0	25	37	59.68	-	-	-	A	7578263	G	A	7578263	4	1	649	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		7578263	73616947	82	55571										
ALOX15B	0	genome.wustl.edu	37	chr17	7951170	7951170	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ttcatagccaccctcccaccTgtcaatgccacatgtgatgt	6	15	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	7951170	7951170	T	C	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	silent	c.1788	p.P596	0.327	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	37	0	0	16	43	72.88	-	-	-	C	7951170	T	C	7951170	2	2	649	1	0	0	0	0	0	0	0	1	539	1567	55	5		5	ALOX15B	17	7951170	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	372907	7951170	73244040	83	55572										
FOXN1	0	genome.wustl.edu	37	chr17	26862056	26862056	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gcccagccaggcaccccccaGgactcgcctctgcctgccca	9	22	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	26862056	26862056	G	C	SNP	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	missense	c.1467	p.Q489H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	15	0	0	13	16	55.17	-	-	-	C	26862056	G	C	26862056	3	2	649	1	0	0	0	0	1	0	0	0	6067	991	35	4	1493	4	FOXN1	17	26862056	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	18910886	26862056	54333154	84	55573										
ACSF2	0	genome.wustl.edu	37	chr17	48540911	48540914	+	Splice_Site	DEL	GAGG	GAGG	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctggaggccatcagcagagaGaggtgggcactggtggacag							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	GAGG	GAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	48540911	48540914	GAGG	-	DEL	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	splice_site_del	c.1046+4_1046+1	e9-1	1.000:1.000:1.000:1.000	-	-	-	no_errors	ACSF2	HGNC	ENSG00000167107	29	0	0	48	19	28.36	-	-	-	-	48540914	GAGG	-	48540911	8	5	649	1	0	1	0	1	0	0	1	0	175	933	33	0	1074	0	ACSF2	17	48540911	Splice_Site	DEL	GAGG	TCGA-C8-A1HJ-01A-11D-A13L-09	21678855	48540911	32654299	85	55574										
CYB561	0	genome.wustl.edu	37	chr17	61511891	61511891	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gagcaccgccccaccgaagcAggccagcagcaggcccagca	12	18	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	61511891	61511891	A	T	SNP	CYB561	ENST00000360793	human	ensembl	69_37n	-1	known	missense	c.628	p.C210S	0.080	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYB561	HGNC	ENSG00000008283	27	0	0	33	24	42.11	-	-	-	T	61511891	A	T	61511891	3	4	649	1	0	0	0	0	1	0	0	0	4150	188	7	5	131	5	CYB561	17	61511891	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	12970980	61511891	19683319	86	55575										
NPLOC4	0	genome.wustl.edu	37	chr17	79526293	79526293	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	agggcaggcgccctaggtccTggggaggctgcacatctcgc	16	13	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	17	79526293	79526293	T	G	SNP	NPLOC4	ENST00000331134	human	ensembl	69_37n	-1	known	silent	c.1819	p.R607	1.000	pfscan_Znf_RanBP2	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,smart_Znf_RanBP2,pirsf_PolyUb_recognition_cplx_Npl4,pfscan_Znf_RanBP2	-	no_errors	NPLOC4	HGNC	ENSG00000182446	19	0	0	29	18	38.3	-	-	-	G	79526293	T	G	79526293	2	3	649	1	0	0	0	0	0	0	0	1	10659	1579	55	5		5	NPLOC4	17	79526293	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	18014402	79526293	1668917	87	55576										
CEP192	0	genome.wustl.edu	37	chr18	13057640	13057640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	atgcttgctgtgtcgggatcGcttcccagaccctcctcagt	10	14	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	18	13057640	13057640	G	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.4165	p.A1389T	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	67	0	0	23	40	62.5	-	-	-	A	13057640	G	A	13057640	3	1	649	1	0	0	0	0	1	0	0	0	3280	1087	38	1	4239	1	CEP192	18	13057640	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09		13057640	65019608	88	55577										
EMR1	0	genome.wustl.edu	37	chr19	6926467	6926467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aggctgtgatactgttcttgAtggtcagaaacctgaaggtg	13	6	2	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	6926467	6926467	A	G	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	missense	c.2077	p.M693V	0.963	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	109	0	0	121	91	42.92	-	-	-	G	6926467	A	G	6926467	3	3	649	1	0	0	0	0	1	0	0	0	5141	333	12	5	2139	5	EMR1	19	6926467	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		6926467	52202516	89	55578										
ATG4D	0	genome.wustl.edu	37	chr19	10659646	10659646	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	agccgagtggaagtctgtggTcatcctggtgcccgtgcgac	15	11	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	10659646	10659646	T	G	SNP	ATG4D	ENST00000309469	human	ensembl	69_37n	1	known	missense	c.902	p.V301G	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734	54	0	0	112	53	31.93	-	-	-	G	10659646	T	G	10659646	3	3	649	1	0	0	0	0	1	0	0	0	1103	1667	58	5	924	5	ATG4D	19	10659646	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	3733179	10659646	48469337	90	55579										
ASF1B	0	genome.wustl.edu	37	chr19	14247177	14247177	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	caccgtccgccagggcttcaCtgcactcgaagctgatctcg	10	16	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	14247177	14247177	C	G	SNP	ASF1B	ENST00000263382	human	ensembl	69_37n	-1	known	missense	c.92	p.S31T	0.078	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1B	HGNC	ENSG00000105011	25	0	0	30	11	26.19	-	-	-	G	14247177	C	G	14247177	3	3	649	1	0	0	0	0	1	0	0	0	1042	565	20	4	532	4	ASF1B	19	14247177	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	3587531	14247177	44881806	91	55580										
PKN1	0	genome.wustl.edu	37	chr19	14551135	14551135	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	aataacccctcggagcaggaGctggaggtggggtccagggt	17	9	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	14551135	14551135	G	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	1	known	silent	c.33	p.E11	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	12	0	0	18	7	28	-	-	-	A	14551135	G	A	14551135	2	1	649	1	0	0	0	0	0	0	0	1	12053	962	34	4		4	PKN1	19	14551135	Silent	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	303958	14551135	44577848	92	55581										
ZNF607	0	genome.wustl.edu	37	chr19	38189435	38189435	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cccgcatttgttgcattcaaAgggtttcttaccactgtgaa	8	10	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	38189435	38189435	A	T	SNP	ZNF607	ENST00000355202	human	ensembl	69_37n	-1	known	missense	c.1597	p.F533I	0.214	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182	42	0	0	19	8	29.63	-	-	-	T	38189435	A	T	38189435	3	4	649	1	0	0	0	0	1	0	0	0	18129	72	3	5	497	5	ZNF607	19	38189435	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09	23638300	38189435	20939548	93	55582										
CARD8	0	genome.wustl.edu	37	chr19	48715054	48715054	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	acgtccagggccaggtccccTttcttctccaccatgctcag	8	17	3	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	48715054	48715054	T	A	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.1527	p.K509N	0.083	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	79	0	0	141	73	34.11	-	-	-	A	48715054	T	A	48715054	3	1	649	1	0	0	0	0	1	0	0	0	2676	1606	56	5	90	5	CARD8	19	48715054	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	10525619	48715054	10413929	94	55583										
ZNF544	0	genome.wustl.edu	37	chr19	58758105	58758105	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctttccaaatctgatgtgatCtctcagctggagcaagaaga	9	9	3	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	19	58758105	58758105	C	G	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	1	known	missense	c.189	p.I63M	0.811	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	43	0	0	39	38	49.35	-	-	-	G	58758105	C	G	58758105	3	3	649	1	0	0	0	0	1	0	0	0	18073	903	32	2	199	2	ZNF544	19	58758105	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	10043051	58758105	370878	95	55584										
IDH3B	0	genome.wustl.edu	37	chr20	2644347	2644347	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gtgcatcagctcaggccccaCaccgtctcccggaagcatgg	11	16	3	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	20	2644347	2644347	C	A	SNP	IDH3B	ENST00000380843	human	ensembl	69_37n	-1	known	missense	c.175	p.V59L	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3B	HGNC	ENSG00000101365	27	0	0	8	21	72.41	-	-	-	A	2644347	C	A	2644347	3	1	649	1	0	0	0	0	1	0	0	0	7551	478	17	4	1182	4	IDH3B	20	2644347	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09		2644347	60381173	96	55585										
ATRN	0	genome.wustl.edu	37	chr20	3553410	3553410	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gttcggtggtttcaatagtcTcctcctcagcgacatcctgg	10	12	3	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	20	3553410	3553410	T	C	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.1904	p.L635P	1.000	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	54	0	0	19	31	62	-	-	-	C	3553410	T	C	3553410	3	2	649	1	0	0	0	0	1	0	0	0	1210	1551	54	5	1950	5	ATRN	20	3553410	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	909063	3553410	59472110	97	55586										
C20orf26	0	genome.wustl.edu	37	chr20	20278908	20278908	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tataaaatggtggaaaccatCacgtgcctttctagggagcc	10	9	2	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	20	20278908	20278908	C	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	silent	c.3300	p.I1100	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	32	0	0	32	20	38.46	-	-	-	A	20278908	C	A	20278908	2	1	649	1	0	0	0	0	0	0	0	1	2126	816	29	2		2	C20orf26	20	20278908	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	16725498	20278908	42746612	98	55587										
RUNX1	0	genome.wustl.edu	37	chr21	36231819	36231819	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gattttgatggctctgtggtAggtggcgacttgcggtgggt	18	5	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	21	36231819	36231819	A	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.565	p.Y189H	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	177	0	0	295	37	11.14	-	-	-	G	36231819	A	G	36231819	3	3	649	1	0	0	0	0	1	0	0	0	13832	420	15	5	926	5	RUNX1	21	36231819	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		36231819	11898076	99	55588										
TSSK2	0	genome.wustl.edu	37	chr22	19119536	19119536	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctgggcgtgatcctgtacatCatggtctgcggctccatgcc	12	13	2	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	19119536	19119536	C	T	SNP	TSSK2	ENST00000399635	human	ensembl	69_37n	1	known	silent	c.624	p.I208	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK2	HGNC	ENSG00000206203	25	0	0	20	14	41.18	-	-	-	T	19119536	C	T	19119536	2	4	649	1	0	0	0	0	0	0	0	1	16765	816	29	2		2	TSSK2	22	19119536	Silent	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09		19119536	32185030	100	55589										
LZTR1	0	genome.wustl.edu	37	chr22	21348559	21348559	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	gatcaaatacccacggaaagGtccgcctgggtgggggtgga	16	9	1	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	21348559	21348559	G	A	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	splice_site	c.1615+1	e14+1	1.000	-	-	-	no_errors	LZTR1	HGNC	ENSG00000099949	11	0	0	7	6	46.15	-	-	-	A	21348559	G	A	21348559	5	1	649	1	0	0	0	0	0	0	1	0	9204	1275	44	4	1670	4	LZTR1	22	21348559	Splice_Site	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	2229023	21348559	29956007	101	55590										
LZTR1	0	genome.wustl.edu	37	chr22	21351303	21351303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ctcgcttccccttggcagtgGccatgcccaggcagggaggg	15	14	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	21351303	21351303	G	T	SNP	LZTR1	ENST00000415817	human	ensembl	69_37n	1	putative	missense	c.352	p.A118S	0.004	NULL	superfamily_BTB/POZ_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LZTR1	HGNC	ENSG00000099949	27	0	0	39	31	44.29	-	-	-	T	21351303	G	T	21351303	3	4	649	1	0	0	0	0	1	0	0	0	9204	1218	42	4		4	LZTR1	22	21351303	Missense_Mutation	SNP	G	TCGA-C8-A1HJ-01A-11D-A13L-09	2744	21351303	29953263	102	55591										
MN1	0	genome.wustl.edu	37	chr22	28194900	28194900	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cgctgctgctgctgctgctgTtgctgttgctgttgctgctg	14	11	0	0			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	28194900	28194900	T	C	SNP	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	silent	c.1632	p.Q544	0.937	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	20	0	0	6	4	40	-	-	-	C	28194900	T	C	28194900	2	2	649	1	0	0	0	0	0	0	0	1	9745	1722	60	5		5	MN1	22	28194900	Silent	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	6843597	28194900	23109666	103	55592										
HORMAD2	0	genome.wustl.edu	37	chr22	30499480	30499480	+	Frame_Shift_Del	DEL	T	T	-													0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	atgtcccgggtcactgcataTtatcagatggtaagtaatag							TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	30499480	30499480	T	-	DEL	HORMAD2	ENST00000336726	human	ensembl	69_37n	1	known	frame_shift_del	c.248	p.I84fs	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD2	HGNC	ENSG00000176635	37	0	0	12	2	14.29	-	-	-	-	30499480	T	-	30499480	7	5	649	1	0	1	0	1	0	0	0	0	7338	1493	52	0	258	0	HORMAD2	22	30499480	Frame_Shift_Del	DEL	T	TCGA-C8-A1HJ-01A-11D-A13L-09	2304580	30499480	20805086	104	55593										
NCAPH2	0	genome.wustl.edu	37	chr22	50957642	50957642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	cctctccagaaggcccgatgCccctgggtgggggcgaggac	16	14	1	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	22	50957642	50957642	C	T	SNP	NCAPH2	ENST00000299821	human	ensembl	69_37n	1	known	missense	c.754	p.P252S	0.005	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	12	0	0	14	8	36.36	-	-	-	T	50957642	C	T	50957642	3	4	649	1	0	0	0	0	1	0	0	0	10282	739	26	4	788	4	NCAPH2	22	50957642	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	20458162	50957642	346924	105	55594										
RAI2	0	genome.wustl.edu	37	chrX	17818732	17818732	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	ggagtcttctcttttgaaggAgaagtttttggtggacaccc	12	7	2	2			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	X	17818732	17818732	A	T	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.1399	p.S467T	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	81	0	0	38	16	29.63	-	-	-	T	17818732	A	T	17818732	3	4	649	1	0	0	0	0	1	0	0	0	13092	304	11	5	197	5	RAI2	23	17818732	Missense_Mutation	SNP	A	TCGA-C8-A1HJ-01A-11D-A13L-09		17818732	137451828	106	55595										
SLC38A5	0	genome.wustl.edu	37	chrX	48326122	48326122	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgaactggaccggcttgctcCcaggagcaggaccacgactg	13	13	0	1			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	X	48326122	48326122	C	A	SNP	SLC38A5	ENST00000317669	human	ensembl	69_37n	-1	known	missense	c.104	p.G35V	0.972	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483	27	0	0	20	22	52.38	-	-	-	A	48326122	C	A	48326122	3	1	649	1	0	0	0	0	1	0	0	0	14696	623	22	4	1370	4	SLC38A5	23	48326122	Missense_Mutation	SNP	C	TCGA-C8-A1HJ-01A-11D-A13L-09	30507390	48326122	106944438	107	55596										
SAGE1	0	genome.wustl.edu	37	chrX	134988615	134988615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	9	0.255770451453908	1.68957871396896	2.40921409214092	0.826016260162602	0.0804953560371517	0.5224358974359	0	tgaacagaagatggaaaatgTccaaccagcacctgataacg	9	9	0	4			TCGA-C8-A1HJ-01A-11D-A13L-09	TCGA-C8-A1HJ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a62c3601-b90f-402f-8212-ffdfde3c6df8	913051a1-919a-436c-8fc2-9110968c19c3	X	134988615	134988615	T	C	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.641	p.V214A	0.235	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	71	0	0	49	19	27.94	-	-	-	C	134988615	T	C	134988615	3	2	649	1	0	0	0	0	1	0	0	0	13895	1667	58	5	663	5	SAGE1	23	134988615	Missense_Mutation	SNP	T	TCGA-C8-A1HJ-01A-11D-A13L-09	86662493	134988615	20281945	108	55597										
CDK11A	0	genome.wustl.edu	37	chr1	1635354	1635354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	cgaagatgcagcccactgacCacatgtccacggccgtggag	12	14	0	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	1635354	1635354	C	A	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	missense	c.1820	p.W607L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	43	0	0	39	28	41.79	-	-	-	A	1635354	C	A	1635354	3	1	650	1	0	0	0	0	1	0	0	0	3155	595	21	4	538	4	CDK11A	1	1635354	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		1635354	247615267	1	55598										
KIAA1522	0	genome.wustl.edu	37	chr1	33238473	33238473	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ttttctcccccagactcacaGaaagagctggcctgaccacc	7	16	2	4			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	33238473	33238473	G	C	SNP	KIAA1522	ENST00000401073	human	ensembl	69_37n	1	known	missense	c.3270	p.Q1090H	0.904	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522	38	0	0	50	25	33.33	-	-	-	C	33238473	G	C	33238473	3	2	650	1	0	0	0	0	1	0	0	0	8290	933	33	2	3296	2	KIAA1522	1	33238473	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	31603119	33238473	216012148	2	55599										
RNF19B	0	genome.wustl.edu	37	chr1	33429830	33429830	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	caccctgctctcgcttatctCcaggcgcaggtagtggcgga	12	14	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	33429830	33429830	C	G	SNP	RNF19B	ENST00000373456	human	ensembl	69_37n	-1	known	missense	c.457	p.E153Q	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514	9	0	0	16	4	20	-	-	-	G	33429830	C	G	33429830	3	3	650	1	0	0	0	0	1	0	0	0	13557	864	30	2	1803	2	RNF19B	1	33429830	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	191357	33429830	215820791	3	55600										
BCL10	0	genome.wustl.edu	37	chr1	85736385	85736385	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gaagttctgtgttttttctcGccgaatagattcaacaaggg	10	7	3	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	85736385	85736385	G	C	SNP	BCL10	ENST00000271015	human	ensembl	69_37n	-1	known	missense	c.262	p.R88G	0.406	pfam_CARD,superfamily_DEATH-like	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867	88	0	0	85	44	34.11	-	-	-	C	85736385	G	C	85736385	3	2	650	1	0	0	0	0	1	0	0	0	1366	1095	38	3	447	3	BCL10	1	85736385	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	52306555	85736385	163514236	4	55601										
GON4L	0	genome.wustl.edu	37	chr1	155733322	155733322	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ctcctgactcatgcgcctttCagatgccagccaagtcagtt	8	14	3	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	155733322	155733322	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.4507	p.E1503K	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	89	0	0	266	37	12.21	-	-	-	T	155733322	C	T	155733322	3	4	650	1	0	0	0	0	1	0	0	0	6621	835	29	2	2259	2	GON4L	1	155733322	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	69996937	155733322	93517299	5	55602										
OBSCN	0	genome.wustl.edu	37	chr1	228451893	228451893	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gcggggaccagtgccacgctGagctgcgaggtggcccaggc	18	13	0	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	1	228451893	228451893	G	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.4662	p.L1554	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	41	0	0	96	18	15.79	-	-	-	C	228451893	G	C	228451893	2	2	650	1	0	0	0	0	0	0	0	1	10885	1277	45	2		2	OBSCN	1	228451893	Silent	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	72718571	228451893	20798728	6	55603										
HEATR5B	0	genome.wustl.edu	37	chr2	37229509	37229509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	aactgtggctgccaccaaacGagcactttcttctgatagtc	8	12	2	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	37229509	37229509	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	missense	c.5257	p.R1753C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	34	0	0	60	11	15.49	-	-	-	A	37229509	G	A	37229509	3	1	650	1	0	0	0	0	1	0	0	0	7083	1058	37	1	978	1	HEATR5B	2	37229509	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09		37229509	205969864	7	55604										
SRBD1	0	genome.wustl.edu	37	chr2	45773940	45773940	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	caaagtaagcttctgtttccCtgcaggcagttccatttcca	7	12	1	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	45773940	45773940	C	G	SNP	SRBD1	ENST00000263736	human	ensembl	69_37n	-1	known	missense	c.1805	p.R602T	1.000	smart_YqgF/RNaseH-like_dom	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	65	0	0	132	74	35.92	-	-	-	G	45773940	C	G	45773940	3	3	650	1	0	0	0	0	1	0	0	0	15224	681	24	4	1214	4	SRBD1	2	45773940	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	8544431	45773940	197425433	8	55605										
MBD5	0	genome.wustl.edu	37	chr2	149247274	149247274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agctctgagtgccatgagtgCcttcactgcctcaattggtg	11	11	3	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	149247274	149247274	C	T	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	missense	c.3374	p.A1125V	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	56	0	0	72	24	25	-	-	-	T	149247274	C	T	149247274	3	4	650	1	0	0	0	0	1	0	0	0	9418	739	26	4	3400	4	MBD5	2	149247274	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	103473334	149247274	93952099	9	55606										
TTN	0	genome.wustl.edu	37	chr2	179479656	179479656	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tttaaggccttcacgcggtaGgcataccatttgccttcctc	8	13	1	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	179479656	179479656	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.40974	p.A13658	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	34	0	0	68	29	29.9	-	-	-	A	179479656	G	A	179479656	2	1	650	1	0	0	0	0	0	0	0	1	16832	987	35	4		4	TTN	2	179479656	Silent	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	30232382	179479656	63719717	10	55607										
SMARCAL1	0	genome.wustl.edu	37	chr2	217279872	217279872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agttaggtcaaggtcatgctCaggcttcacctgagatcagg	12	9	5	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	217279872	217279872	C	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.445	p.Q149E	0.000	NULL	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	30	0	0	24	13	35.14	-	-	-	G	217279872	C	G	217279872	3	3	650	1	0	0	0	0	1	0	0	0	14862	827	29	2	447	2	SMARCAL1	2	217279872	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	37800216	217279872	25919501	11	55608										
SMARCAL1	0	genome.wustl.edu	37	chr2	217279969	217279969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agagacaccagctcattcctCtggacagcctcccagggatg	10	14	2	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	2	217279969	217279969	C	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.542	p.S181C	0.002	NULL	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	26	0	0	21	13	38.24	-	-	-	G	217279969	C	G	217279969	3	3	650	1	0	0	0	0	1	0	0	0	14862	913	32	2	544	2	SMARCAL1	2	217279969	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	97	217279969	25919404	12	55609										
TTLL3	0	genome.wustl.edu	37	chr3	9860595	9860595	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ctattcaggcagtagaggaaGaggcctcaggtaagtactgt	13	7	2	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	3	9860595	9860595	G	C	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	missense	c.949	p.E317Q	0.105	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	45	0	0	41	32	43.84	-	-	-	C	9860595	G	C	9860595	3	2	650	1	0	0	0	0	1	0	0	0	16825	943	33	2	538	2	TTLL3	3	9860595	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09		9860595	188161835	13	55610										
TTLL3	0	genome.wustl.edu	37	chr3	9876579	9876579	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	aaggtggcacccagcatcctGaagccaagaaaggtgggcct	13	11	0	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	3	9876579	9876579	G	A	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	silent	c.2340	p.L780	0.822	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	21	0	0	21	11	34.38	-	-	-	A	9876579	G	A	9876579	2	1	650	1	0	0	0	0	0	0	0	1	16825	1277	45	2		2	TTLL3	3	9876579	Silent	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	15984	9876579	188145851	14	55611										
C3orf20	0	genome.wustl.edu	37	chr3	14803016	14803016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agctcatttttgggggccgtGttttgaatggatatggcctc	13	7	1	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	3	14803016	14803016	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	missense	c.2389	p.V797I	0.617	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	62	0	0	46	16	25.4	-	-	-	A	14803016	G	A	14803016	3	1	650	1	0	0	0	0	1	0	0	0	2233	1377	48	4	2439	4	C3orf20	3	14803016	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	4926437	14803016	183219414	15	55612										
PLD1	0	genome.wustl.edu	37	chr3	171417579	171417579	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	caacctccaacgatttccctCaaccactgggcgtttcagga	7	15	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	3	171417579	171417579	C	G	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.1183	p.E395Q	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	68	0	0	47	33	41.25	-	-	-	G	171417579	C	G	171417579	3	3	650	1	0	0	0	0	1	0	0	0	12119	835	29	2	2105	2	PLD1	3	171417579	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	156614563	171417579	26604851	16	55613										
N4BP2	0	genome.wustl.edu	37	chr4	40122051	40122051	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ttgggaaacaaaaaagcaaaTcgactttggaaaagttccca	8	7	0	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	4	40122051	40122051	T	C	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.2320	p.S774P	0.215	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	17	0	0	14	7	33.33	-	-	-	C	40122051	T	C	40122051	3	2	650	1	0	0	0	0	1	0	0	0	10182	1435	50	5	2346	5	N4BP2	4	40122051	Missense_Mutation	SNP	T	TCGA-C8-A1HK-01A-21D-A13L-09		40122051	151032225	17	55614										
ATP10D	0	genome.wustl.edu	37	chr4	47514627	47514627	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gaggtgcaaccagggatgatGattcagggccatacaactat	12	8	1	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	4	47514627	47514627	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	69_37n	1	known	missense	c.70	p.D24Y	0.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	40	0	0	96	16	14.29	-	-	-	T	47514627	G	T	47514627	3	4	650	1	0	0	0	0	1	0	0	0	1122	1290	45	2	72	2	ATP10D	4	47514627	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	7392576	47514627	143639649	18	55615										
UGT2B28	0	genome.wustl.edu	37	chr4	70146552	70146552	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tttggttatatttttcacaaGaacaagaaatcctgtgggaa	8	5	1	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	4	70146552	70146552	G	C	SNP	UGT2B28	ENST00000335568	human	ensembl	69_37n	1	known	missense	c.334	p.E112Q	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226	81	0	0	164	43	20.77	-	-	-	C	70146552	G	C	70146552	3	2	650	1	0	0	0	0	1	0	0	0	17057	943	33	2	336	2	UGT2B28	4	70146552	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	22631925	70146552	121007724	19	55616										
ENAM	0	genome.wustl.edu	37	chr4	71508643	71508643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tcctattacccaagaggagaTtccagaaaagtcccaaattc	6	11	0	3			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	4	71508643	71508643	T	C	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	silent	c.1500	p.D500	0.726	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	15	0	0	22	12	35.29	-	-	-	C	71508643	T	C	71508643	2	2	650	1	0	0	0	0	0	0	0	1	5149	1490	52	5		5	ENAM	4	71508643	Silent	SNP	T	TCGA-C8-A1HK-01A-21D-A13L-09	1362091	71508643	119645633	20	55617										
PAM	0	genome.wustl.edu	37	chr5	102353039	102353039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tagcttcttattttggcagcActttgatatgcctcatgata	7	8	2	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	5	102353039	102353039	A	G	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	missense	c.2333	p.H778R	0.967	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	83	0	0	202	44	17.89	-	-	-	G	102353039	A	G	102353039	3	3	650	1	0	0	0	0	1	0	0	0	11485	173	6	5	2415	5	PAM	5	102353039	Missense_Mutation	SNP	A	TCGA-C8-A1HK-01A-21D-A13L-09		102353039	78562221	21	55618										
CDK19	0	genome.wustl.edu	37	chr6	110944513	110944513	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	caagaggaacactttgctgtCaggcttgaccttgtgtttct	10	9	2	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	6	110944513	110944513	C	G	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.913	p.D305H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	45	0	0	133	23	14.74	-	-	-	G	110944513	C	G	110944513	3	3	650	1	0	0	0	0	1	0	0	0	3164	826	29	2	615	2	CDK19	6	110944513	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		110944513	60170554	22	55619										
MTHFD1L	0	genome.wustl.edu	37	chr6	151208992	151208992	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ggttagtaggtgtcaacctaGatggaaagaagattttggta	13	3	1	3			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	6	151208992	151208992	G	T	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	missense	c.655	p.D219Y	0.921	pfam_THF_DH/CycHdrlase_NAD-bd_dom,prints_THF_DH/CycHdrlase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	74	0	0	96	24	20	-	-	-	T	151208992	G	T	151208992	3	4	650	1	0	0	0	0	1	0	0	0	10000	942	33	2	681	2	MTHFD1L	6	151208992	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	40264479	151208992	19906075	23	55620										
IGF2R	0	genome.wustl.edu	37	chr6	160510276	160510277	+	Frame_Shift_Del	DEL	TT	TT	-													0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gagcttcagcctcggagataTttattttaagtaagtaaaac							TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	6	160510276	160510277	TT	-	DEL	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	frame_shift_del	c.6458_6459	p.Y2154fs	0.910:1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	30	0	0	28	24	44.44	-	-	-	-	160510277	TT	-	160510276	7	5	650	1	0	1	0	1	0	0	0	0	7630	1493	52	0	6628	0	IGF2R	6	160510276	Frame_Shift_Del	DEL	TT	TCGA-C8-A1HK-01A-21D-A13L-09	9301284	160510276	10604791	24	55621										
INTS1	0	genome.wustl.edu	37	chr7	1529306	1529306	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agggtagagatggcgaggttCggaggctggtacctggaagg	20	5	0	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	7	1529306	1529306	C	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	silent	c.2562	p.P854	0.237	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	19	0	0	22	8	26.67	-	-	-	T	1529306	C	T	1529306	2	4	650	1	0	0	0	0	0	0	0	1	7829	871	31	1		1	INTS1	7	1529306	Silent	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		1529306	157609357	25	55622										
DDX56	0	genome.wustl.edu	37	chr7	44612192	44612192	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ccagaggagactcttgagctCttcttcaaagccaaaggaaa	9	10	4	3			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	7	44612192	44612192	C	G	SNP	DDX56	ENST00000258772	human	ensembl	69_37n	-1	known	missense	c.535	p.E179Q	0.988	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX56	HGNC	ENSG00000136271	45	0	0	69	22	23.91	-	-	-	G	44612192	C	G	44612192	3	3	650	1	0	0	0	0	1	0	0	0	4405	922	32	2	1152	2	DDX56	7	44612192	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	43082886	44612192	114526471	26	55623										
TAF5	0	genome.wustl.edu	37	chr10	105145226	105145226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tggatattattttgtgtcagGgggccatgaccgagtagctc	13	7	1	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	10	105145226	105145226	G	A	SNP	TAF5	ENST00000369839	human	ensembl	69_37n	1	known	missense	c.1808	p.G603E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	21	0	0	41	16	28.07	-	-	-	A	105145226	G	A	105145226	3	1	650	1	0	0	0	0	1	0	0	0	15620	1232	43	4	1838	4	TAF5	10	105145226	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09		105145226	30389521	27	55624										
OR4C11	0	genome.wustl.edu	37	chr11	55371451	55371451	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	atgcagacctgctggctcatGatggttgggtaacgcaaggg	15	8	1	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	11	55371451	55371451	G	A	SNP	OR4C11	ENST00000302231	human	ensembl	69_37n	-1	known	silent	c.399	p.I133	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C11	HGNC	ENSG00000172188	16	0	0	18	10	35.71	-	-	-	A	55371451	G	A	55371451	2	1	650	1	0	0	0	0	0	0	0	1	11118	1280	45	2		2	OR4C11	11	55371451	Silent	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09		55371451	79635065	28	55625										
OR5AN1	0	genome.wustl.edu	37	chr11	59132707	59132707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ctatacatcaggaatctttgTctatttgagttccagctctg	7	9	4	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	11	59132707	59132707	T	C	SNP	OR5AN1	ENST00000313940	human	ensembl	69_37n	1	known	missense	c.776	p.V259A	0.958	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AN1	HGNC	ENSG00000176495	51	0	0	92	32	25.81	-	-	-	C	59132707	T	C	59132707	3	2	650	1	0	0	0	0	1	0	0	0	11216	1667	58	5	778	5	OR5AN1	11	59132707	Missense_Mutation	SNP	T	TCGA-C8-A1HK-01A-21D-A13L-09	3761256	59132707	75873809	29	55626										
AHNAK	0	genome.wustl.edu	37	chr11	62298678	62298678	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tttaagatccaggtcaacatCtggcaaagacatcttaggag	9	8	3	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	11	62298678	62298678	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.3211	p.D1071N	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	26	0	0	23	14	37.84	-	-	-	T	62298678	C	T	62298678	3	4	650	1	0	0	0	0	1	0	0	0	414	913	32	2	14581	2	AHNAK	11	62298678	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	3165971	62298678	72707838	30	55627										
TAS2R10	0	genome.wustl.edu	37	chr12	10978187	10978187	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gatgatgaaagatatcaaaaCtttcattgccttcacatgag	7	7	3	4			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	12	10978187	10978187	C	A	SNP	TAS2R10	ENST00000240619	human	ensembl	69_37n	-1	known	missense	c.682	p.V228F	0.090	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R10	HGNC	ENSG00000121318	20	0	0	37	16	30.19	-	-	-	A	10978187	C	A	10978187	3	1	650	1	0	0	0	0	1	0	0	0	15658	565	20	4	245	4	TAS2R10	12	10978187	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		10978187	122873708	31	55628										
MLL2	0	genome.wustl.edu	37	chr12	49437197	49437197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ggattcttcatctgcaatatCtggaccatcatctcctatga	6	11	6	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	12	49437197	49437197	C	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.5482	p.D1828H	0.990	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	26	0	0	69	10	12.66	-	-	-	G	49437197	C	G	49437197	3	3	650	1	0	0	0	0	1	0	0	0	9692	913	32	2	11255	2	MLL2	12	49437197	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	38459010	49437197	84414698	32	55629										
KRT78	0	genome.wustl.edu	37	chr12	53233561	53233561	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ccctcacctgcactcctcgcCctccagcagcctgcggtaag	8	20	1	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	12	53233561	53233561	C	T	SNP	KRT78	ENST00000304620	human	ensembl	69_37n	-1	known	missense	c.1255	p.G419S	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423	31	0	0	45	7	13.46	-	-	-	T	53233561	C	T	53233561	3	4	650	1	0	0	0	0	1	0	0	0	8544	623	22	4	319	4	KRT78	12	53233561	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	3796364	53233561	80618334	33	55630										
TMCC3	0	genome.wustl.edu	37	chr12	94976125	94976126	+	Frame_Shift_Del	DEL	CG	CG	-													0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	atactccgcaacattcccatCgcgcgatgtttgctcaattt							TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	12	94976125	94976126	CG	-	DEL	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	frame_shift_del	c.268_267	p.D90fs	1.000:0.001	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	76	0	0	123	75	37.31	-	-	-	-	94976126	CG	-	94976125	7	5	650	1	0	1	0	1	0	0	0	0	16089	884	31	0	1177	0	TMCC3	12	94976125	Frame_Shift_Del	DEL	CG	TCGA-C8-A1HK-01A-21D-A13L-09	41742564	94976125	38875770	34	55631										
CCNF	0	genome.wustl.edu	37	chr16	2493715	2493715	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gaggtgagagcttccagtgaGatcgtctgccagctatttca	12	9	2	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	16	2493715	2493715	G	C	SNP	CCNF	ENST00000397066	human	ensembl	69_37n	1	known	missense	c.843	p.E281D	0.294	superfamily_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,pfam_F-box_dom_cyclin-like,superfamily_Cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	CCNF	HGNC	ENSG00000162063	32	0	0	43	11	20.37	-	-	-	C	2493715	G	C	2493715	3	2	650	1	0	0	0	0	1	0	0	0	2951	933	33	2	877	2	CCNF	16	2493715	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09		2493715	87861038	35	55632										
GSG1L	0	genome.wustl.edu	37	chr16	27974518	27974518	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ggtcaatgaagctgcgacatTtttcacctttgaaaagaaga	9	7	2	4			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	16	27974518	27974518	T	A	SNP	GSG1L	ENST00000447459	human	ensembl	69_37n	-1	known	missense	c.356	p.K119I	0.735	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	-	no_errors	GSG1L	HGNC	ENSG00000169181	35	0	0	86	17	16.5	-	-	-	A	27974518	T	A	27974518	3	1	650	1	0	0	0	0	1	0	0	0	6872	1841	64	5	663	5	GSG1L	16	27974518	Missense_Mutation	SNP	T	TCGA-C8-A1HK-01A-21D-A13L-09	25480803	27974518	62380235	36	55633										
GNAO1	0	genome.wustl.edu	37	chr16	56388909	56388909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ataacatccaggtggtgttcGacgccgtcaccgacatcatc	9	13	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	16	56388909	56388909	G	A	SNP	GNAO1	ENST00000262493	human	ensembl	69_37n	1	known	missense	c.1009	p.D337N	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAO1	HGNC	ENSG00000087258	42	0	0	70	19	21.35	-	-	-	A	56388909	G	A	56388909	3	1	650	1	0	0	0	0	1	0	0	0	6560	1058	37	1	1389	1	GNAO1	16	56388909	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	28414391	56388909	33965844	37	55634										
TP53	0	genome.wustl.edu	37	chr17	7577100	7577100	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ttcctctgtgcgccggtctcTcccaggacaggcacaaacac	9	16	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	17	7577100	7577100	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.838	p.R280*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	37	0	0	9	47	82.46	-	-	-	A	7577100	T	A	7577100	4	1	650	1	0	0	0	0	0	1	0	0	16477	1559	54	5	448	5	TP53	17	7577100	Nonsense_Mutation	SNP	T	TCGA-C8-A1HK-01A-21D-A13L-09		7577100	73618110	38	55635										
KRTAP4-7	0	genome.wustl.edu	37	chr17	39240791	39240791	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tgccagcccacctgctgccgCcccagctgctgccgcccctg	10	22	0	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	17	39240791	39240791	C	T	SNP	KRTAP4-7	ENST00000391417	human	ensembl	69_37n	1	known	silent	c.333	p.R111	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871	32	0	0	21	5	18.52	-	-	-	T	39240791	C	T	39240791	2	4	650	1	0	0	0	0	0	0	0	1	8609	726	26	4		4	KRTAP4-7	17	39240791	Silent	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	31663691	39240791	41954419	39	55636										
COG1	0	genome.wustl.edu	37	chr17	71193052	71193052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tttctaggtcaactattctgCatgaaagcaagatgttgctc	8	8	3	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	17	71193052	71193052	C	G	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.574	p.H192D	0.999	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	45	0	0	73	79	51.63	-	-	-	G	71193052	C	G	71193052	3	3	650	1	0	0	0	0	1	0	0	0	3687	710	25	4	584	4	COG1	17	71193052	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	31952261	71193052	10002158	40	55637										
DNAH17	0	genome.wustl.edu	37	chr17	76567116	76567116	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gtcgttggcttccttcagccCtgcacggaacaagaacaagt	10	12	1	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	17	76567116	76567116	C	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	splice_site	c.833-1	e5-1	1.000	-	-	-	no_errors	DNAH17	HGNC	ENSG00000187775	29	0	0	39	7	15.22	-	-	-	G	76567116	C	G	76567116	5	3	650	1	0	0	0	0	0	0	1	0	4637	695	24	4	12860	4	DNAH17	17	76567116	Splice_Site	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	5374064	76567116	4628094	41	55638										
KIRREL2	0	genome.wustl.edu	37	chr19	36351484	36351484	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	aggttagaggtcgtggcagaCgcctcgttcctgactgagcc	14	11	0	4			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	19	36351484	36351484	C	T	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	silent	c.843	p.D281	0.998	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	26	0	0	38	15	28.3	-	-	-	T	36351484	C	T	36351484	2	4	650	1	0	0	0	0	0	0	0	1	8378	535	19	1		1	KIRREL2	19	36351484	Silent	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		36351484	22777499	42	55639										
PEG3	0	genome.wustl.edu	37	chr19	57325285	57325285	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	agtgaaggtttctgtgcattCatggcagtcatagtatggtt	12	5	3	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	19	57325285	57325285	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.4525	p.E1509K	0.031	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	39	0	0	103	23	18.11	-	-	-	T	57325285	C	T	57325285	3	4	650	1	0	0	0	0	1	0	0	0	11793	835	29	2	245	2	PEG3	19	57325285	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	20973801	57325285	1803698	43	55640										
CPXM1	0	genome.wustl.edu	37	chr20	2777256	2777256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	tcttcccaatgctgtagatgCgggtgatgttggggcattgc	14	8	1	2			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	20	2777256	2777256	C	T	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.962	p.R321H	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	93	0	0	171	28	14	-	-	-	T	2777256	C	T	2777256	3	4	650	1	0	0	0	0	1	0	0	0	3867	768	27	1	1270	1	CPXM1	20	2777256	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		2777256	60248264	44	55641										
FAM65C	0	genome.wustl.edu	37	chr20	49236628	49236628	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	cgtacatcttggaggattttGcaggcattcgcgatctcacg	11	10	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	20	49236628	49236628	G	T	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.164	p.A55E	0.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	32	0	0	66	10	13.16	-	-	-	T	49236628	G	T	49236628	3	4	650	1	0	0	0	0	1	0	0	0	5646	1319	46	4	2768	4	FAM65C	20	49236628	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	46459372	49236628	13788892	45	55642										
PHKA2	0	genome.wustl.edu	37	chrX	18949833	18949833	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	cttccccataggaactcggtCtactgtgtgaggattcttgt	10	10	2	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	X	18949833	18949833	C	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1171	p.D391Y	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	41	0	0	77	13	14.44	-	-	-	A	18949833	C	A	18949833	3	1	650	1	0	0	0	0	1	0	0	0	11918	913	32	2	2624	2	PHKA2	23	18949833	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09		18949833	136320727	46	55643										
PHF8	0	genome.wustl.edu	37	chrX	54026388	54026388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	cagggtgtctcctgttctctCgcaaacctaaaggaggaaag	11	10	2	0			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	X	54026388	54026388	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1256	p.R419Q	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	33	0	0	43	9	17.31	-	-	-	T	54026388	C	T	54026388	3	4	650	1	0	0	0	0	1	0	0	0	11914	884	31	1	2144	1	PHF8	23	54026388	Missense_Mutation	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	35076555	54026388	101244172	47	55644										
TRO	0	genome.wustl.edu	37	chrX	54955076	54955076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	ggactgggctgtgcagtaccGcgaggcagtggagatggaag	19	7	0	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	X	54955076	54955076	G	A	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.1919	p.R640H	0.012	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	17	0	0	25	5	16.67	-	-	-	A	54955076	G	A	54955076	3	1	650	1	0	0	0	0	1	0	0	0	16670	1087	38	1	1961	1	TRO	23	54955076	Missense_Mutation	SNP	G	TCGA-C8-A1HK-01A-21D-A13L-09	928688	54955076	100315484	48	55645										
CTAG2	0	genome.wustl.edu	37	chrX	153881598	153881598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.326530612244898	16	0.000201931255738497	3.04046021093001	4.57256711409396	1.7502649240551	0.0991480719971313	0.5224358974359	11	gcagaagcggcaccgccatgCggaccccgcggggcgcctcc	15	18	0	1			TCGA-C8-A1HK-01A-21D-A13L-09	TCGA-C8-A1HK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	357e0b08-fa33-4f58-92b0-d7293b63c01d	4b60a302-dafb-454c-a114-c83e6df778cc	X	153881598	153881598	C	T	SNP	CTAG2	ENST00000369585	human	ensembl	69_37n	-1	known	silent	c.192	p.P64	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890	27	0	0	27	9	24.32	-	-	-	T	153881598	C	T	153881598	2	4	650	1	0	0	0	0	0	0	0	1	4023	755	27	1		1	CTAG2	23	153881598	Silent	SNP	C	TCGA-C8-A1HK-01A-21D-A13L-09	98926522	153881598	1388962	49	55646										
EPHA2	0	genome.wustl.edu	37	chr1	16458583	16458583	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gtggtgtaggtggcctcgggGtcgtcctccagcacgcggga	18	11	0	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	1	16458583	16458583	G	A	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	silent	c.2301	p.D767	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	176	0	0	83	85	50.6	-	-	-	A	16458583	G	A	16458583	2	1	651	1	0	0	0	0	0	0	0	1	5204	1252	44	4		4	EPHA2	1	16458583	Silent	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		16458583	232792038	1	55647										
SPAG17	0	genome.wustl.edu	37	chr1	118693979	118693979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	caaccacaaaagcaatggagGcctgccaatcgttctattaa	7	11	1	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	1	118693979	118693979	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.101	p.A34V	0.580	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	122	0	0	57	26	27.08	-	-	-	A	118693979	G	A	118693979	3	1	651	1	0	0	0	0	1	0	0	0	15070	1203	42	4	6758	4	SPAG17	1	118693979	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09	102235396	118693979	130556642	2	55648										
IRF6	0	genome.wustl.edu	37	chr1	209969822	209969822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gctcttattgagagcacagcGcagctgggccttccatttag	11	11	1	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	1	209969822	209969822	G	T	SNP	IRF6	ENST00000367021	human	ensembl	69_37n	-1	known	missense	c.250	p.R84S	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595	220	0	0	319	42	11.63	-	-	-	T	209969822	G	T	209969822	3	4	651	1	0	0	0	0	1	0	0	0	7888	1087	38	3	1177	3	IRF6	1	209969822	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09	91275843	209969822	39280799	3	55649										
GREM2	0	genome.wustl.edu	37	chr1	240656415	240656415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gcgctggggcttgcagaaggCgcaggactggaaggactcct	17	10	0	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	1	240656415	240656415	C	T	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	missense	c.361	p.A121T	1.000	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	60	0	0	69	30	29.7	-	-	-	T	240656415	C	T	240656415	3	4	651	1	0	0	0	0	1	0	0	0	6813	768	27	1	149	1	GREM2	1	240656415	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09	30686593	240656415	8594206	4	55650										
NT5C1B	0	genome.wustl.edu	37	chr2	18766032	18766032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	atttcccgcacgatgccttgGgcccaggcctccggattctc	10	16	1	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	2	18766032	18766032	G	A	SNP	NT5C1B	ENST00000406971	human	ensembl	69_37n	-1	known	missense	c.404	p.P135L	0.000	NULL	NULL	-	no_errors	NT5C1B	HGNC	ENSG00000185013	46	0	0	20	20	50	-	-	-	A	18766032	G	A	18766032	3	1	651	1	0	0	0	0	1	0	0	0	10759	1219	43	4	1205	4	NT5C1B	2	18766032	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		18766032	224433341	5	55651										
ADAMTS16	0	genome.wustl.edu	37	chr5	5237179	5237179	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gggactccatgctcggaggaTagccgtaatgtttgtataga	13	7	0	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	5	5237179	5237179	T	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.2121	p.D707	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	471	0	0	431	107	19.89	-	-	-	C	5237179	T	C	5237179	2	2	651	1	0	0	0	0	0	0	0	1	261	1403	49	5		5	ADAMTS16	5	5237179	Silent	SNP	T	TCGA-C8-A1HL-01A-11D-A135-09		5237179	175678081	6	55652										
PDE4D	0	genome.wustl.edu	37	chr5	58285743	58285743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	aaatgtttttaataaatcccGttcctgtaggaaaaaaaatc	5	6	0	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	5	58285743	58285743	G	A	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.1291	p.R431W	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	155	0	0	98	55	35.48	-	-	-	A	58285743	G	A	58285743	3	1	651	1	0	0	0	0	1	0	0	0	11715	1144	40	1	1162	1	PDE4D	5	58285743	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09	53048564	58285743	122629517	7	55653										
MCM7	0	genome.wustl.edu	37	chr7	99696921	99696921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	caatctgcgcatgagttcagCagggtactggttctgggggc	15	9	3	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	7	99696921	99696921	C	T	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	missense	c.382	p.A128T	0.981	superfamily_NA-bd_OB-fold-like,prints_MCM_7	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	207	0	0	136	96	41.38	-	-	-	T	99696921	C	T	99696921	3	4	651	1	0	0	0	0	1	0	0	0	9463	710	25	4	1825	4	MCM7	7	99696921	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		99696921	59441742	8	55654										
TRPM3	0	genome.wustl.edu	37	chr9	73151247	73151247	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	tctgcttctcgctctggatgGcagcaagttaagtcctccac	9	13	3	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	9	73151247	73151247	G	T	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	nonsense	c.4827	p.C1609*	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	180	0	0	127	30	19.11	-	-	-	T	73151247	G	T	73151247	4	4	651	1	0	0	0	0	0	1	0	0	16683	1195	42	4	381	4	TRPM3	9	73151247	Nonsense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		73151247	68062184	9	55655										
NUP214	0	genome.wustl.edu	37	chr9	134072801	134072801	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	aactgctctttccaccacctCtagtaagctggaaaccccac	5	16	2	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	9	134072801	134072801	C	T	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.3923	p.S1308F	0.077	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	332	0	0	272	69	20.23	-	-	-	T	134072801	C	T	134072801	3	4	651	1	0	0	0	0	1	0	0	0	10835	913	32	2	4034	2	NUP214	9	134072801	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09	60921554	134072801	7140630	10	55656										
GATA3	0	genome.wustl.edu	37	chr10	8115872	8115872	+	Frame_Shift_Del	DEL	C	C	-													0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	atgtcctccctgagccacatCtcgcccttcagccactccag							TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	10	8115872	8115872	C	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1221	p.S408fs	0.767	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	170	0	0	119	56	31.11	-	-	-	-	8115872	C	-	8115872	7	5	651	1	0	1	0	1	0	0	0	0	6305	903	32	0	1239	0	GATA3	10	8115872	Frame_Shift_Del	DEL	C	TCGA-C8-A1HL-01A-11D-A135-09		8115872	127418875	11	55657	439	2								
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115874	+	Frame_Shift_Del	DEL	C	C	-													0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gtcctccctgagccacatctCgcccttcagccactccagcc							TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	10	8115874	8115874	C	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1223	p.S408fs	0.903	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	169	0	0	121	55	30.56	-	-	-	-	8115874	C	-	8115874	7	5	651	1	0	1	0	1	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Del	DEL	C	TCGA-C8-A1HL-01A-11D-A135-09	2	8115874	127418873	12	55658	439	2								
SEMA4G	0	genome.wustl.edu	37	chr10	102743085	102743085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	caccaccaccactgaagaccCgctctgtgctccggggtgat	10	16	1	3			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	10	102743085	102743085	C	T	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.1729	p.R577C	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	99	0	0	73	55	42.97	-	-	-	T	102743085	C	T	102743085	3	4	651	1	0	0	0	0	1	0	0	0	14124	652	23	1	1783	1	SEMA4G	10	102743085	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09	94627211	102743085	32791662	13	55659										
NOLC1	0	genome.wustl.edu	37	chr10	103920683	103920683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	cagttcttcttctgatgactCcagtgaggaagaggaagaga	12	7	3	5			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	10	103920683	103920683	C	T	SNP	NOLC1	ENST00000405356	human	ensembl	69_37n	1	known	missense	c.1604	p.S535F	1.000	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197	68	0	0	43	27	38.57	-	-	-	T	103920683	C	T	103920683	3	4	651	1	0	0	0	0	1	0	0	0	10601	855	30	2	1612	2	NOLC1	10	103920683	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09	1177598	103920683	31614064	14	55660										
CDHR5	0	genome.wustl.edu	37	chr11	624855	624855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gtccccgggggtcggacgagCagcccggtgaacagcagggg	19	12	0	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	11	624855	624855	C	T	SNP	CDHR5	ENST00000358353	human	ensembl	69_37n	-1	known	silent	c.48	p.L16	0.007	NULL	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834	39	0	0	22	12	35.29	-	-	-	T	624855	C	T	624855	2	4	651	1	0	0	0	0	0	0	0	1	3151	697	25	4		4	CDHR5	11	624855	Silent	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		624855	134381661	15	55661										
PELI3	0	genome.wustl.edu	37	chr11	66236347	66236347	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	aaaccgaggctcagagagggGaagtgactggcccaagggca	16	9	1	2			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	11	66236347	66236347	G	T	SNP	PELI3	ENST00000320740	human	ensembl	69_37n	1	known	nonsense	c.196	p.E66*	1.000	NULL	pfam_Pellino	-	no_errors	PELI3	HGNC	ENSG00000174516	143	0	0	65	65	49.62	-	-	-	T	66236347	G	T	66236347	4	4	651	1	0	0	0	0	0	1	0	0	11796	1175	41	2	202	2	PELI3	11	66236347	Nonsense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09	65611492	66236347	68770169	16	55662										
DDX51	0	genome.wustl.edu	37	chr12	132626394	132626394	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	ccgcaccctgacacaacctaCgttttctggacgaggctctc	8	16	2	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	12	132626394	132626394	C	G	SNP	DDX51	ENST00000397333	human	ensembl	69_37n	-1	known	splice_site	c.995+1	e6+1	0.999	-	-	-	no_errors	DDX51	HGNC	ENSG00000185163	75	0	0	62	34	35.42	-	-	-	G	132626394	C	G	132626394	5	3	651	1	0	0	0	0	0	0	1	0	4400	550	19	3	1044	3	DDX51	12	132626394	Splice_Site	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		132626394	1225501	17	55663										
ABCC4	0	genome.wustl.edu	37	chr13	95696530	95696530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	agctttataccttggatccaCatttgccgtcgcttcatcaa	6	12	2	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	13	95696530	95696530	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.3619	p.V1207M	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	169	0	0	138	127	47.92	-	-	-	T	95696530	C	T	95696530	3	4	651	1	0	0	0	0	1	0	0	0	55	478	17	4	374	4	ABCC4	13	95696530	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		95696530	19473348	18	55664										
SPTB	0	genome.wustl.edu	37	chr14	65237718	65237718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gtccactagctgggtccggcGcccggcacaggcatcgagca	14	15	0	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	14	65237718	65237718	G	A	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.5683	p.R1895C	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	45	0	0	28	20	40.82	-	-	-	A	65237718	G	A	65237718	3	1	651	1	0	0	0	0	1	0	0	0	15209	1087	38	1	1412	1	SPTB	14	65237718	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		65237718	42111822	19	55665										
LRRC28	0	genome.wustl.edu	37	chr15	99874160	99874160	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	tgaaggagctgcagacactaGacatttctaccaatcgtttg	9	9	1	3			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	15	99874160	99874160	G	T	SNP	LRRC28	ENST00000301981	human	ensembl	69_37n	1	known	missense	c.418	p.D140Y	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	466	2	0.43	446	214	32.42	-	-	-	T	99874160	G	T	99874160	3	4	651	1	0	0	0	0	1	0	0	0	9048	942	33	2	436	2	LRRC28	15	99874160	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		99874160	2657232	20	55666										
SPAG5	0	genome.wustl.edu	37	chr17	26920013	26920013	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	agccactttgaggaatgactGaaatgttctgaagataagtc	10	6	1	5			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	17	26920013	26920013	G	T	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.249	p.F83L	0.188	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	262	0	0	217	41	15.89	-	-	-	T	26920013	G	T	26920013	3	4	651	1	0	0	0	0	1	0	0	0	15072	1281	45	2	3420	2	SPAG5	17	26920013	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		26920013	54275197	21	55667										
PLEKHM1	0	genome.wustl.edu	37	chr17	43545835	43545835	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	tgcaggtgcctcacagtgcaGgtatgtgctggtgttgaggc	16	8	1	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	17	43545835	43545835	G	A	SNP	PLEKHM1	ENST00000430334	human	ensembl	69_37n	-1	known	silent	c.1048	p.L350	0.345	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	419	0	0	87	249	74.11	-	-	-	A	43545835	G	A	43545835	2	1	651	1	0	0	0	0	0	0	0	1	12154	991	35	4		4	PLEKHM1	17	43545835	Silent	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09	16625822	43545835	37649375	22	55668										
ASXL3	0	genome.wustl.edu	37	chr18	31326084	31326084	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	ttcttttgaggaaggtttaaGcagcagctgtgaactgggca	13	6	1	2			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	18	31326084	31326084	G	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.6272	p.S2091I	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	156	0	0	124	31	20	-	-	-	T	31326084	G	T	31326084	3	4	651	1	0	0	0	0	1	0	0	0	1072	971	34	4	6318	4	ASXL3	18	31326084	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		31326084	46751164	23	55669										
VSTM1	0	genome.wustl.edu	37	chr19	54545202	54545202	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	gctccggaagtttggaatggCtggttctgaaagagagagac	15	6	1	3			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	19	54545202	54545202	C	G	SNP	VSTM1	ENST00000338372	human	ensembl	69_37n	-1	known	missense	c.521	p.S174T	0.057	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM1	HGNC	ENSG00000189068	159	0	0	76	35	31.53	-	-	-	G	54545202	C	G	54545202	3	3	651	1	0	0	0	0	1	0	0	0	17325	797	28	4	201	4	VSTM1	19	54545202	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		54545202	4583781	24	55670										
NLRP8	0	genome.wustl.edu	37	chr19	56490781	56490781	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	ctggaaaactgcctgttcacCtccatctgctgccaggccat	8	15	2	0			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	19	56490781	56490781	C	A	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	silent	c.2898	p.T966	0.032	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	125	0	0	67	26	27.96	-	-	-	A	56490781	C	A	56490781	2	1	651	1	0	0	0	0	0	0	0	1	10555	668	24	4		4	NLRP8	19	56490781	Silent	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09	1945579	56490781	2638202	25	55671										
DEFB118	0	genome.wustl.edu	37	chr20	29960765	29960765	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	caaaaatcttcgagcttgctGcattccatccaatgaagacc	6	12	1	2			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	20	29960765	29960765	G	T	SNP	DEFB118	ENST00000253381	human	ensembl	69_37n	1	known	missense	c.164	p.C55F	0.939	NULL	NULL	-	no_errors	DEFB118	HGNC	ENSG00000131068	199	2	1	158	100	38.76	-	-	-	T	29960765	G	T	29960765	3	4	651	1	0	0	0	0	1	0	0	0	4441	1319	46	4	170	4	DEFB118	20	29960765	Missense_Mutation	SNP	G	TCGA-C8-A1HL-01A-11D-A135-09		29960765	33064755	26	55672										
BRS3	0	genome.wustl.edu	37	chrX	135574243	135574243	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.999962424367031	0.571875	0	0.659855769230769	1	1	0	acttctcaaacctatgtagaCccctctgccatgcatttcat	4	14	3	1			TCGA-C8-A1HL-01A-11D-A135-09	TCGA-C8-A1HL-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88c9ef88-5d85-4a4b-9c68-d9ec709a1f07	b4876746-52a8-4fc2-8454-93a4f8f0e8b6	X	135574243	135574243	C	A	SNP	BRS3	ENST00000370648	human	ensembl	69_37n	1	known	missense	c.909	p.D303E	0.008	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239	550	0	0	509	104	16.94	-	-	-	A	135574243	C	A	135574243	3	1	651	1	0	0	0	0	1	0	0	0	1530	506	18	4	919	4	BRS3	23	135574243	Missense_Mutation	SNP	C	TCGA-C8-A1HL-01A-11D-A135-09		135574243	19696317	27	55673										
PANK4	0	genome.wustl.edu	37	chr1	2447048	2447048	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gagccagtattttcgggccaGagcgtcatcggtgaggtcca	14	10	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	2447048	2447048	G	T	SNP	PANK4	ENST00000378466	human	ensembl	69_37n	-1	known	missense	c.1327	p.L443M	0.763	superfamily_DUF89,pirsf_PanK_long	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	99	0	0	80	11	12.09	-	-	-	T	2447048	G	T	2447048	3	4	652	1	0	0	0	0	1	0	0	0	11492	933	33	2	1034	2	PANK4	1	2447048	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		2447048	246803573	1	55674										
PADI3	0	genome.wustl.edu	37	chr1	17599840	17599840	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctcctcacttgcaggatgaGatggagctgggctacgttca	12	10	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	17599840	17599840	G	C	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	missense	c.1053	p.E351D	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	102	0	0	60	11	15.28	-	-	-	C	17599840	G	C	17599840	3	2	652	1	0	0	0	0	1	0	0	0	11452	933	33	2	1091	2	PADI3	1	17599840	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	15152792	17599840	231650781	2	55675										
EIF2C3	0	genome.wustl.edu	37	chr1	36479639	36479639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cacagaggcagtgcagagaaGaaatattgaagtaagacatg	12	5	0	5			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	36479639	36479639	G	C	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	missense	c.1396	p.E466Q	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	287	0	0	115	116	50.22	-	-	-	C	36479639	G	C	36479639	3	2	652	1	0	0	0	0	1	0	0	0	5042	943	33	2	1438	2	EIF2C3	1	36479639	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	18879799	36479639	212770982	3	55676										
ERMAP	0	genome.wustl.edu	37	chr1	43305956	43305956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcaggctggagaagagcccGgttgcattttggtaagttat	13	6	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	43305956	43305956	G	A	SNP	ERMAP	ENST00000372514	human	ensembl	69_37n	1	known	missense	c.701	p.R234Q	0.835	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010	472	0	0	329	60	15.38	-	-	-	A	43305956	G	A	43305956	3	1	652	1	0	0	0	0	1	0	0	0	5271	1116	39	1	735	1	ERMAP	1	43305956	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	6826317	43305956	205944665	4	55677										
SLC2A1	0	genome.wustl.edu	37	chr1	43393372	43393372	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggacgtggaccctggctgaaGagttcagccacgatgaacca	13	11	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	43393372	43393372	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	69_37n	-1	known	silent	c.1182	p.L394	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394	112	0	0	96	19	16.24	-	-	-	A	43393372	G	A	43393372	2	1	652	1	0	0	0	0	0	0	0	1	14627	929	33	2		2	SLC2A1	1	43393372	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	87416	43393372	205857249	5	55678										
BEND5	0	genome.wustl.edu	37	chr1	49193689	49193689	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcagtttcatccacagtttCttgtgctattctgtcataca	5	10	5	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	49193689	49193689	C	G	SNP	BEND5	ENST00000371833	human	ensembl	69_37n	-1	known	missense	c.1135	p.E379Q	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	453	1	0.22	310	88	22.11	-	-	-	G	49193689	C	G	49193689	3	3	652	1	0	0	0	0	1	0	0	0	1405	922	32	2	134	2	BEND5	1	49193689	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5800317	49193689	200056932	6	55679										
RPE65	0	genome.wustl.edu	37	chr1	68895512	68895512	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agggatgttaatctccacttCagcccgggcaacttcactta	8	12	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	68895512	68895512	C	A	SNP	RPE65	ENST00000262340	human	ensembl	69_37n	-1	known	nonsense	c.1549	p.E517*	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	203	0	0	78	87	52.73	-	-	-	A	68895512	C	A	68895512	4	1	652	1	0	0	0	0	0	1	0	0	13631	835	29	2	56	2	RPE65	1	68895512	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	19701823	68895512	180355109	7	55680										
ZRANB2	0	genome.wustl.edu	37	chr1	71544146	71544146	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tttaaaaaacatacgttttaCattgccagtcattagcacta	4	8	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	71544146	71544146	C	A	SNP	ZRANB2	ENST00000370920	human	ensembl	69_37n	-1	known	missense	c.212	p.C71F	1.000	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485	194	0	0	120	46	27.71	-	-	-	A	71544146	C	A	71544146	3	1	652	1	0	0	0	0	1	0	0	0	18316	478	17	4	850	4	ZRANB2	1	71544146	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2648634	71544146	177706475	8	55681										
GBP7	0	genome.wustl.edu	37	chr1	89607275	89607275	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agggctttgtctgactgcagGatggattcctctataaccac	10	10	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	89607275	89607275	G	C	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.1422	p.I474M	0.998	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	363	0	0	319	50	13.55	-	-	-	C	89607275	G	C	89607275	3	2	652	1	0	0	0	0	1	0	0	0	6329	1164	41	2	506	2	GBP7	1	89607275	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	18063129	89607275	159643346	9	55682										
ABCA4	0	genome.wustl.edu	37	chr1	94486873	94486873	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	attccatactcctcggggctCctgtccttaggcaggctggc	11	14	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	94486873	94486873	C	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.4941	p.R1647S	0.958	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	281	0	0	255	46	15.28	-	-	-	A	94486873	C	A	94486873	3	1	652	1	0	0	0	0	1	0	0	0	34	854	30	2	1944	2	ABCA4	1	94486873	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4879598	94486873	154763748	10	55683										
PTPN22	0	genome.wustl.edu	37	chr1	114380359	114380359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aacagttccatcttgcttctCaggtaaatcaagagacatct	6	10	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	114380359	114380359	C	G	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	missense	c.1663	p.E555Q	0.008	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	303	0	0	340	66	16.26	-	-	-	G	114380359	C	G	114380359	3	3	652	1	0	0	0	0	1	0	0	0	12870	835	29	2	819	2	PTPN22	1	114380359	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	19893486	114380359	134870262	11	55684										
AP4B1	0	genome.wustl.edu	37	chr1	114445417	114445417	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caacttcttctggacaatatCtacagtggcactggccttca	7	12	4	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	114445417	114445417	C	G	SNP	AP4B1	ENST00000256658	human	ensembl	69_37n	-1	known	missense	c.181	p.D61H	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu	-	no_errors	AP4B1	HGNC	ENSG00000134262	206	0	0	208	33	13.69	-	-	-	G	114445417	C	G	114445417	3	3	652	1	0	0	0	0	1	0	0	0	752	913	32	2	2074	2	AP4B1	1	114445417	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	65058	114445417	134805204	12	55685										
ATP1A1	0	genome.wustl.edu	37	chr1	116941293	116941293	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtgaatgactctccagctttGaagaaagcagacattggggt	12	7	1	5			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	116941293	116941293	G	T	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.2175	p.L725F	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	542	2	0.37	617	83	11.84	-	-	-	T	116941293	G	T	116941293	3	4	652	1	0	0	0	0	1	0	0	0	1132	1281	45	2	2253	2	ATP1A1	1	116941293	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2495876	116941293	132309328	13	55686										
RPS27	0	genome.wustl.edu	37	chr1	153963702	153963702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggatgtgaaatgcccaggtGaggagacggcttgctgtagt	16	6	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	153963702	153963702	G	C	SNP	RPS27	ENST00000392558	human	ensembl	69_37n	1	known	missense	c.118	p.E40Q	0.998	NULL	NULL	-	no_errors	RPS27	HGNC	ENSG00000177954	103	1	0.96	102	43	29.66	-	-	-	C	153963702	G	C	153963702	3	2	652	1	0	0	0	0	1	0	0	0	13724	1305	45	2		2	RPS27	1	153963702	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	37022409	153963702	95286919	14	55687										
NES	0	genome.wustl.edu	37	chr1	156639318	156639318	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcagactgctccagcccgttCatcactcccccattcacatg	5	18	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	156639318	156639318	C	A	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.4662	p.M1554I	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	50	0	0	83	17	17	-	-	-	A	156639318	C	A	156639318	3	1	652	1	0	0	0	0	1	0	0	0	10409	826	29	2	207	2	NES	1	156639318	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2675616	156639318	92611303	15	55688										
NES	0	genome.wustl.edu	37	chr1	156641606	156641606	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggtctagctatctcctggtCaagagacttcagtggttcta	10	9	5	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	156641606	156641606	C	G	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.2374	p.D792H	0.001	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	254	0	0	213	30	12.35	-	-	-	G	156641606	C	G	156641606	3	3	652	1	0	0	0	0	1	0	0	0	10409	826	29	2	2495	2	NES	1	156641606	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2288	156641606	92609015	16	55689										
OR10J3	0	genome.wustl.edu	37	chr1	159283656	159283656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctgtcccagggaactctggGacttaggcttcaggtagatg	13	10	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	159283656	159283656	G	C	SNP	OR10J3	ENST00000332217	human	ensembl	69_37n	-1	known	missense	c.794	p.S265C	0.997	pfam_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266	255	0	0	203	159	43.92	-	-	-	C	159283656	G	C	159283656	3	2	652	1	0	0	0	0	1	0	0	0	10984	1174	41	2	197	2	OR10J3	1	159283656	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2642050	159283656	89966965	17	55690										
LAMC1	0	genome.wustl.edu	37	chr1	183097764	183097764	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtgaagctccaggaattagaGagtctcatagcaaaccttgg	11	8	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	183097764	183097764	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	silent	c.3159	p.E1053	0.985	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	293	0	0	469	68	12.66	-	-	-	A	183097764	G	A	183097764	2	1	652	1	0	0	0	0	0	0	0	1	8668	933	33	2		2	LAMC1	1	183097764	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	23814108	183097764	66152857	18	55691										
PLA2G4A	0	genome.wustl.edu	37	chr1	186908212	186908212	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gagattaatgaagaactaatGaaaaatgttagccacaatcc	7	6	0	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	186908212	186908212	G	T	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.768	p.M256I	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	458	0	0	470	76	13.87	-	-	-	T	186908212	G	T	186908212	3	4	652	1	0	0	0	0	1	0	0	0	12075	1290	45	2	798	2	PLA2G4A	1	186908212	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	3810448	186908212	62342409	19	55692										
PLA2G4A	0	genome.wustl.edu	37	chr1	186925342	186925342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcagctttattcaataccaGagaaggacgtgctgggaagg	12	7	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	186925342	186925342	G	C	SNP	PLA2G4A	ENST00000367466	human	ensembl	69_37n	1	known	missense	c.1445	p.R482T	0.999	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711	377	0	0	402	194	32.55	-	-	-	C	186925342	G	C	186925342	3	2	652	1	0	0	0	0	1	0	0	0	12075	942	33	2	1495	2	PLA2G4A	1	186925342	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	17130	186925342	62325279	20	55693										
KCNT2	0	genome.wustl.edu	37	chr1	196397237	196397237	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aatataagccaaatgtacctGgagcctaggatgagcataga	10	7	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	196397237	196397237	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	nonsense	c.982	p.Q328*	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	215	0	0	233	30	11.36	-	-	-	A	196397237	G	A	196397237	4	1	652	1	0	0	0	0	0	1	0	0	8146	1357	47	4	2501	4	KCNT2	1	196397237	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	9471895	196397237	52853384	21	55694										
ASPM	0	genome.wustl.edu	37	chr1	197073413	197073413	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgaatctttataacagatgtGaggatgtgaatatacatttt	8	3	1	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	197073413	197073413	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.4968	p.L1656	0.036	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	153	0	0	143	19	11.66	-	-	-	C	197073413	G	C	197073413	2	2	652	1	0	0	0	0	0	0	0	1	1060	1277	45	2		2	ASPM	1	197073413	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	676176	197073413	52177208	22	55695										
ZNF281	0	genome.wustl.edu	37	chr1	200377516	200377516	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggaagacacggtaggcatttCtactgagtaactctgcatgt	11	8	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	200377516	200377516	C	G	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	missense	c.1318	p.E440Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	497	0	0	618	75	10.82	-	-	-	G	200377516	C	G	200377516	3	3	652	1	0	0	0	0	1	0	0	0	17914	922	32	2	1373	2	ZNF281	1	200377516	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3304103	200377516	48873105	23	55696										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220330691	220330691	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acaagatggagcacaggatgGagtggtgctccaccagtggg	16	8	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	220330691	220330691	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.3476	p.S1159C	0.744	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	153	0	0	239	31	11.4	-	-	-	C	220330691	G	C	220330691	3	2	652	1	0	0	0	0	1	0	0	0	13019	1174	41	2	725	2	RAB3GAP2	1	220330691	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	19953175	220330691	28919930	24	55697										
FBXO28	0	genome.wustl.edu	37	chr1	224301869	224301869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggagcggatggcagaggaagGaggcggcggccaaggcgacg	22	8	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	224301869	224301869	G	A	SNP	FBXO28	ENST00000366862	human	ensembl	69_37n	1	known	missense	c.38	p.G13E	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO28	HGNC	ENSG00000143756	22	0	0	22	8	26.67	-	-	-	A	224301869	G	A	224301869	3	1	652	1	0	0	0	0	1	0	0	0	5784	1174	41	2	40	2	FBXO28	1	224301869	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	3971178	224301869	24948752	25	55698										
PARP1	0	genome.wustl.edu	37	chr1	226568860	226568860	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gccttcacttcatccttgttCcgggacagcttcccgagagt	9	14	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	226568860	226568860	C	T	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	silent	c.1209	p.R403	0.989	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_NAD_ADPRT,pfscan_BRCT_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	294	0	0	409	63	13.29	-	-	-	T	226568860	C	T	226568860	2	4	652	1	0	0	0	0	0	0	0	1	11527	842	30	2		2	PARP1	1	226568860	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2266991	226568860	22681761	26	55699										
C1orf95	0	genome.wustl.edu	37	chr1	226736785	226736785	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gccgtcatctgcctcttcctCaacactttcgtgccgggact	8	16	4	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	226736785	226736785	C	G	SNP	C1orf95	ENST00000366788	human	ensembl	69_37n	1	known	silent	c.180	p.L60	1.000	NULL	NULL	-	no_errors	C1orf95	HGNC	ENSG00000203685	20	0	0	28	15	34.09	-	-	-	G	226736785	C	G	226736785	2	3	652	1	0	0	0	0	0	0	0	1	2092	813	29	2		2	C1orf95	1	226736785	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	167925	226736785	22513836	27	55700										
SDCCAG8	0	genome.wustl.edu	37	chr1	243449584	243449584	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tttattataggaggaactctCtggaatgaaaaataaaatac	7	4	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	243449584	243449584	C	G	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.431	p.S144C	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	158	0	0	156	52	24.88	-	-	-	G	243449584	C	G	243449584	3	3	652	1	0	0	0	0	1	0	0	0	14047	913	32	2	449	2	SDCCAG8	1	243449584	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	16712799	243449584	5801037	28	55701										
AHCTF1	0	genome.wustl.edu	37	chr1	247067320	247067320	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agctgcagcagatgcaaactCaaaacatccccttcactgaa	6	13	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	247067320	247067320	C	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.924	p.L308F	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	246	0	0	210	177	45.74	-	-	-	G	247067320	C	G	247067320	3	3	652	1	0	0	0	0	1	0	0	0	408	825	29	2	6023	2	AHCTF1	1	247067320	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3617736	247067320	2183301	29	55702										
OR2M4	0	genome.wustl.edu	37	chr1	248402510	248402510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctgggaagaaatctatctctCtggcaggttgtggaactcag	12	8	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	1	248402510	248402510	C	T	SNP	OR2M4	ENST00000306687	human	ensembl	69_37n	1	known	silent	c.280	p.L94	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M4	HGNC	ENSG00000171180	625	0	0	591	346	36.85	-	-	-	T	248402510	C	T	248402510	2	4	652	1	0	0	0	0	0	0	0	1	11085	912	32	2		2	OR2M4	1	248402510	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1335190	248402510	848111	30	55703										
MYT1L	0	genome.wustl.edu	37	chr2	1795704	1795704	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggctttattttctggactctGataacgatcttgatttgtat	8	6	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	1795704	1795704	G	C	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.3496	p.Q1166E	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	421	0	0	245	108	30.59	-	-	-	C	1795704	G	C	1795704	3	2	652	1	0	0	0	0	1	0	0	0	10179	1299	45	2	68	2	MYT1L	2	1795704	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		1795704	241403669	31	55704										
APOB	0	genome.wustl.edu	37	chr2	21232398	21232398	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aatttcaccattgagtctctGagtcacctcacggattttgt	7	10	4	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	21232398	21232398	G	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.7342	p.Q2448E	0.074	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	273	0	0	236	50	17.42	-	-	-	C	21232398	G	C	21232398	3	2	652	1	0	0	0	0	1	0	0	0	787	1299	45	2	6365	2	APOB	2	21232398	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	19436694	21232398	221966975	32	55705										
PREPL	0	genome.wustl.edu	37	chr2	44548923	44548923	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aatgtgaaaacaacatgtatCtagttcgggaatctgtccac	8	8	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	44548923	44548923	C	T	SNP	PREPL	ENST00000420756	human	ensembl	69_37n	-1	novel	silent	c.282	p.*94	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PREPL	HGNC	ENSG00000138078	197	0	0	126	26	17.11	-	-	-	T	44548923	C	T	44548923	2	4	652	1	0	0	0	0	0	0	0	1	12556	928	32	2		2	PREPL	2	44548923	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	23316525	44548923	198650450	33	55706										
EFEMP1	0	genome.wustl.edu	37	chr2	56094242	56094242	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gccccactattattgtcaatCttaacacagagcttgtgcgg	8	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	56094242	56094242	C	G	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	missense	c.1448	p.R483T	1.000	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	272	0	0	205	100	32.68	-	-	-	G	56094242	C	G	56094242	3	3	652	1	0	0	0	0	1	0	0	0	4976	913	32	2	37	2	EFEMP1	2	56094242	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	11545319	56094242	187105131	34	55707										
PCBP1	0	genome.wustl.edu	37	chr2	70314894	70314894	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccatggatgccggtgtgactGaaagtggactaaatgtgact	13	7	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	70314894	70314894	G	C	SNP	PCBP1	ENST00000303577	human	ensembl	69_37n	1	known	missense	c.19	p.E7Q	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP1	HGNC	ENSG00000169564	120	0	0	104	20	16.13	-	-	-	C	70314894	G	C	70314894	3	2	652	1	0	0	0	0	1	0	0	0	11573	1291	45	2	21	2	PCBP1	2	70314894	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	14220652	70314894	172884479	35	55708										
ADD2	0	genome.wustl.edu	37	chr2	70917942	70917942	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caggtgggtccaaggcacttCtgcaggttgatccgatcggc	14	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	70917942	70917942	C	G	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.825	p.Q275H	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	136	0	0	120	32	21.05	-	-	-	G	70917942	C	G	70917942	3	3	652	1	0	0	0	0	1	0	0	0	305	912	32	2	1568	2	ADD2	2	70917942	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	603048	70917942	172281431	36	55709										
AFF3	0	genome.wustl.edu	37	chr2	100210557	100210557	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccttgcaagtgctcttgatCtccttctctctcaggctggg	9	13	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	100210557	100210557	C	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	silent	c.1641	p.E547	0.001	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	152	0	0	115	49	29.88	-	-	-	T	100210557	C	T	100210557	2	4	652	1	0	0	0	0	0	0	0	1	358	912	32	2		2	AFF3	2	100210557	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	29292615	100210557	142988816	37	55710										
PDCL3	0	genome.wustl.edu	37	chr2	101186079	101186079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggaaagcaactaaactgaaGaataaattcggagaagtttt	9	4	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	101186079	101186079	G	A	SNP	PDCL3	ENST00000450127	human	ensembl	69_37n	1	putative	missense	c.107	p.R36K	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PDCL3	HGNC	ENSG00000115539	244	0	0	210	78	27.08	-	-	-	A	101186079	G	A	101186079	3	1	652	1	0	0	0	0	1	0	0	0	11701	933	33	2	278	2	PDCL3	2	101186079	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	975522	101186079	142013294	38	55711										
CCDC138	0	genome.wustl.edu	37	chr2	109404510	109404510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgatttttcaaatttttatcAgtctaagtataagagaagaa	6	3	3	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	109404510	109404510	A	G	SNP	CCDC138	ENST00000295124	human	ensembl	69_37n	1	known	missense	c.116	p.Q39R	0.430	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	65	0	0	47	15	24.19	-	-	-	G	109404510	A	G	109404510	3	3	652	1	0	0	0	0	1	0	0	0	2797	188	7	5	122	5	CCDC138	2	109404510	Missense_Mutation	SNP	A	TCGA-C8-A1HM-01A-12D-A135-09	8218431	109404510	133794863	39	55712										
ZC3H6	0	genome.wustl.edu	37	chr2	113089587	113089587	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgcccctaaactctcttcctCagctggccttccactgggaa	7	16	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	113089587	113089587	C	T	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.3092	p.S1031L	0.999	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	197	0	0	188	22	10.43	-	-	-	T	113089587	C	T	113089587	3	4	652	1	0	0	0	0	1	0	0	0	17667	838	29	2	3138	2	ZC3H6	2	113089587	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3685077	113089587	130109786	40	55713										
GTDC1	0	genome.wustl.edu	37	chr2	144714895	144714895	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcccaatgcctttttggcctCtgaaaaaatatcttttaaaa	4	9	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	144714895	144714895	C	G	SNP	GTDC1	ENST00000344850	human	ensembl	69_37n	-1	known	missense	c.997	p.E333Q	1.000	pfam_Glyco_trans_1	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964	160	0	0	117	31	20.95	-	-	-	G	144714895	C	G	144714895	3	3	652	1	0	0	0	0	1	0	0	0	6902	922	32	2	395	2	GTDC1	2	144714895	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	31625308	144714895	98484478	41	55714										
FIGN	0	genome.wustl.edu	37	chr2	164467534	164467534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggcaggtacgctgaaggcgGaggcggtgcccccccagggc	18	13	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	164467534	164467534	G	A	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.808	p.P270S	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	86	0	0	60	27	31.03	-	-	-	A	164467534	G	A	164467534	3	1	652	1	0	0	0	0	1	0	0	0	5937	1174	41	2	1475	2	FIGN	2	164467534	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	19752639	164467534	78731839	42	55715										
LRP2	0	genome.wustl.edu	37	chr2	169995097	169995097	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccatactcaccattgccattGacctgtcaatagcagtctca	5	14	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	169995097	169995097	G	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.13508	p.S4503L	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	143	0	0	229	37	13.81	-	-	-	A	169995097	G	A	169995097	3	1	652	1	0	0	0	0	1	0	0	0	9022	1294	45	2	479	2	LRP2	2	169995097	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	5527563	169995097	73204276	43	55716										
UBR3	0	genome.wustl.edu	37	chr2	170917689	170917689	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgaagaaggaactcaggaatGtgcaatggtatgtttctgca	12	5	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	170917689	170917689	G	C	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.4886	p.C1629S	0.991	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	164	0	0	252	78	23.64	-	-	-	C	170917689	G	C	170917689	3	2	652	1	0	0	0	0	1	0	0	0	17000	1377	48	4	5020	4	UBR3	2	170917689	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	922592	170917689	72281684	44	55717										
ITGA6	0	genome.wustl.edu	37	chr2	173349861	173349861	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcatgcaggataatatcagaGataaactgcgtcccattccc	7	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	173349861	173349861	G	A	SNP	ITGA6	ENST00000264106	human	ensembl	69_37n	1	known	missense	c.1840	p.D614N	1.000	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	145	0	0	96	38	28.15	-	-	-	A	173349861	G	A	173349861	3	1	652	1	0	0	0	0	1	0	0	0	7934	942	33	2	1773	2	ITGA6	2	173349861	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2432172	173349861	69849512	45	55718										
PDK1	0	genome.wustl.edu	37	chr2	173423483	173423483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	catttatgtttctgcggcaaGagttgcctgtcagactggca	11	9	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	173423483	173423483	G	C	SNP	PDK1	ENST00000282077	human	ensembl	69_37n	1	known	missense	c.244	p.E82Q	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256	448	0	0	339	147	30.18	-	-	-	C	173423483	G	C	173423483	3	2	652	1	0	0	0	0	1	0	0	0	11748	943	33	2	250	2	PDK1	2	173423483	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	73622	173423483	69775890	46	55719										
TTN	0	genome.wustl.edu	37	chr2	179441677	179441677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtctaccattttgacaggttCagactgtacaggttctcctt	8	10	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	179441677	179441677	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.61681	p.E20561Q	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	209	0	0	193	37	16.09	-	-	-	G	179441677	C	G	179441677	3	3	652	1	0	0	0	0	1	0	0	0	16832	835	29	2	38750	2	TTN	2	179441677	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6018194	179441677	63757696	47	55720										
TTN	0	genome.wustl.edu	37	chr2	179605821	179605821	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggaaaatcctcaggagcctCtggtgtggactttgctttgc	12	9	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	179605821	179605821	C	G	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11626	p.E3876Q	0.008	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	119	0	0	66	19	22.35	-	-	-	G	179605821	C	G	179605821	3	3	652	1	0	0	0	0	1	0	0	0	16832	922	32	2	92650	2	TTN	2	179605821	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	164144	179605821	63593552	48	55721										
OBSL1	0	genome.wustl.edu	37	chr2	220416900	220416900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcggacttcaccggcgtcctCggcgcgcagctcgctaagca	13	16	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	220416900	220416900	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.5347	p.E1783K	0.998	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	32	0	0	41	29	41.43	-	-	-	T	220416900	C	T	220416900	3	4	652	1	0	0	0	0	1	0	0	0	10886	893	31	1	355	1	OBSL1	2	220416900	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	40811079	220416900	22782473	49	55722										
RBM44	0	genome.wustl.edu	37	chr2	238725683	238725683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atttgttattatcctccaatGgttgtgatgaagtcaaattg	8	5	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	2	238725683	238725683	G	A	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.124	p.G42S	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	156	0	0	64	21	24.71	-	-	-	A	238725683	G	A	238725683	3	1	652	1	0	0	0	0	1	0	0	0	13221	1348	47	4	130	4	RBM44	2	238725683	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	18308783	238725683	4473690	50	55723										
IL5RA	0	genome.wustl.edu	37	chr3	3137081	3137081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctcccattggatagagagacGagttccttcaatctctgctg	9	11	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	3137081	3137081	G	A	SNP	IL5RA	ENST00000256452	human	ensembl	69_37n	-1	known	missense	c.757	p.R253C	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181	288	0	0	346	47	11.87	-	-	-	A	3137081	G	A	3137081	3	1	652	1	0	0	0	0	1	0	0	0	7754	1058	37	1	551	1	IL5RA	3	3137081	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		3137081	194885349	51	55724										
ZNF35	0	genome.wustl.edu	37	chr3	44692688	44692688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caagtgcactccgagaacatCaaagtctgggccccagtgca	10	13	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	44692688	44692688	C	G	SNP	ZNF35	ENST00000396056	human	ensembl	69_37n	1	known	missense	c.129	p.I43M	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981	234	0	0	123	27	18	-	-	-	G	44692688	C	G	44692688	3	3	652	1	0	0	0	0	1	0	0	0	17958	816	29	2	131	2	ZNF35	3	44692688	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	41555607	44692688	153329742	52	55725										
SMARCC1	0	genome.wustl.edu	37	chr3	47719698	47719698	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aacagtttacctcatcacagCacacacatctccagtcaagt	4	14	4	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	47719698	47719698	C	A	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.1561	p.A521S	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	326	1	0.31	260	37	12.46	-	-	-	A	47719698	C	A	47719698	3	1	652	1	0	0	0	0	1	0	0	0	14864	710	25	4	1808	4	SMARCC1	3	47719698	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3027010	47719698	150302732	53	55726										
DNAH1	0	genome.wustl.edu	37	chr3	52430733	52430733	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgggcttcaacatcccctatGagttcacggatggagatctg	11	10	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	52430733	52430733	G	C	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.11530	p.E3844Q	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	153	0	0	114	14	10.94	-	-	-	C	52430733	G	C	52430733	3	2	652	1	0	0	0	0	1	0	0	0	4633	1291	45	2	11812	2	DNAH1	3	52430733	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	4711035	52430733	145591697	54	55727										
CACNA1D	0	genome.wustl.edu	37	chr3	53707806	53707806	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtctgatcatccttggctcaTttttcgtccttaacctggtt	7	11	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	53707806	53707806	T	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.1183	p.F395I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	529	0	0	393	95	19.47	-	-	-	A	53707806	T	A	53707806	3	1	652	1	0	0	0	0	1	0	0	0	2566	1493	52	5	1321	5	CACNA1D	3	53707806	Missense_Mutation	SNP	T	TCGA-C8-A1HM-01A-12D-A135-09	1277073	53707806	144314624	55	55728										
ERC2	0	genome.wustl.edu	37	chr3	56026144	56026144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcattctccacctccttgagGatctccagcaaccggtccac	6	17	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	56026144	56026144	G	A	SNP	ERC2	ENST00000492584	human	ensembl	69_37n	-1	known	missense	c.1148	p.S383F	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERC2	HGNC	ENSG00000187672	345	1	0.29	262	42	13.77	-	-	-	A	56026144	G	A	56026144	3	1	652	1	0	0	0	0	1	0	0	0	5248	1164	41	2	695	2	ERC2	3	56026144	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2318338	56026144	141996286	56	55729										
RETNLB	0	genome.wustl.edu	37	chr3	108475375	108475375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagcagggcaggaggacggtCtgccttggcttttgacacta	14	10	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	108475375	108475375	C	G	SNP	RETNLB	ENST00000295755	human	ensembl	69_37n	-1	known	missense	c.188	p.R63T	0.000	pfam_Resistin,superfamily_Resistin	pfam_Resistin,superfamily_Resistin	-	no_errors	RETNLB	HGNC	ENSG00000163515	165	0	0	161	39	19.5	-	-	-	G	108475375	C	G	108475375	3	3	652	1	0	0	0	0	1	0	0	0	13320	913	32	2	155	2	RETNLB	3	108475375	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	52449231	108475375	89547055	57	55730										
CCDC80	0	genome.wustl.edu	37	chr3	112357123	112357123	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cttctccttctctggtttctCaagcttttcatgctttttag	5	11	4	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	112357123	112357123	C	G	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.1630	p.E544Q	0.978	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	372	0	0	187	132	41.38	-	-	-	G	112357123	C	G	112357123	3	3	652	1	0	0	0	0	1	0	0	0	2881	835	29	2	1250	2	CCDC80	3	112357123	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3881748	112357123	85665307	58	55731										
TOPBP1	0	genome.wustl.edu	37	chr3	133372333	133372333	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccactgtgtggtcacacagtGtacattccatctcttggcac	8	13	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	133372333	133372333	G	T	SNP	TOPBP1	ENST00000508524	human	ensembl	69_37n	-1	putative	nonsense	c.312	p.Y104*	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_start_codon:pseudogene:no_stop_codon	TOPBP1	HGNC	ENSG00000163781	336	0	0	283	54	15.98	-	-	-	T	133372333	G	T	133372333	4	4	652	1	0	0	0	0	0	1	0	0	16465	1377	48	4	3878	4	TOPBP1	3	133372333	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	21015210	133372333	64650097	59	55732										
PLSCR2	0	genome.wustl.edu	37	chr3	146173028	146173028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tagtaattgctcacatacctCctgaaggcagcaggggcaac	10	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	146173028	146173028	C	T	SNP	PLSCR2	ENST00000336685	human	ensembl	69_37n	-1	known	missense	c.319	p.E107K	0.998	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746	248	0	0	275	56	16.92	-	-	-	T	146173028	C	T	146173028	3	4	652	1	0	0	0	0	1	0	0	0	12184	864	30	2	371	2	PLSCR2	3	146173028	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	12800695	146173028	51849402	60	55733										
PPM1L	0	genome.wustl.edu	37	chr3	160786638	160786638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggctcctggagggtccaggGaatcctggccatgtctcggt	15	11	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	160786638	160786638	G	A	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	1	known	missense	c.776	p.G259E	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	211	0	0	208	77	26.92	-	-	-	A	160786638	G	A	160786638	3	1	652	1	0	0	0	0	1	0	0	0	12421	1174	41	2	790	2	PPM1L	3	160786638	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	14613610	160786638	37235792	61	55734										
SERPINI2	0	genome.wustl.edu	37	chr3	167184951	167184951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaattccttgttgccatggaGatactgttctttcacagtga	8	8	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	167184951	167184951	G	C	SNP	SERPINI2	ENST00000264677	human	ensembl	69_37n	-1	known	missense	c.370	p.L124V	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204	320	0	0	340	125	26.82	-	-	-	C	167184951	G	C	167184951	3	2	652	1	0	0	0	0	1	0	0	0	14207	942	33	2	875	2	SERPINI2	3	167184951	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	6398313	167184951	30837479	62	55735										
PHC3	0	genome.wustl.edu	37	chr3	169847313	169847313	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctgctgatgttttattagaGaatgaggctgaattggagaa	12	3	1	5			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	169847313	169847313	G	C	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	missense	c.947	p.S316C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	425	0	0	328	218	39.85	-	-	-	C	169847313	G	C	169847313	3	2	652	1	0	0	0	0	1	0	0	0	11892	942	33	2	2072	2	PHC3	3	169847313	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2662362	169847313	28175117	63	55736										
YEATS2	0	genome.wustl.edu	37	chr3	183508603	183508603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agtctgaaggaatggctcccGtgtcttcatctacggtcagt	11	10	5	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	183508603	183508603	G	T	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.2932	p.V978L	0.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	114	0	0	120	53	30.29	-	-	-	T	183508603	G	T	183508603	3	4	652	1	0	0	0	0	1	0	0	0	17569	1145	40	3	3010	3	YEATS2	3	183508603	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	13661290	183508603	14513827	64	55737										
TBCCD1	0	genome.wustl.edu	37	chr3	186272078	186272078	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccttcacagttttctgccaGatctgtatcttctgttctct	5	12	6	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	3	186272078	186272078	G	A	SNP	TBCCD1	ENST00000338733	human	ensembl	69_37n	-1	known	silent	c.1509	p.I503	0.542	NULL	pfam_Tubulin-bd_cofactor_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	TBCCD1	HGNC	ENSG00000113838	80	0	0	75	29	27.88	-	-	-	A	186272078	G	A	186272078	2	1	652	1	0	0	0	0	0	0	0	1	15727	932	33	2		2	TBCCD1	3	186272078	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2763475	186272078	11750352	65	55738										
TEC	0	genome.wustl.edu	37	chr4	48141011	48141011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggaaacttagcaccagaagAacttgtgtactgatcatcca	8	9	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	48141011	48141011	A	C	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	missense	c.1564	p.S522A	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	TEC	HGNC	ENSG00000135605	181	0	0	153	32	17.3	-	-	-	C	48141011	A	C	48141011	3	2	652	1	0	0	0	0	1	0	0	0	15837	246	9	5	343	5	TEC	4	48141011	Missense_Mutation	SNP	A	TCGA-C8-A1HM-01A-12D-A135-09		48141011	143013265	66	55739										
KIT	0	genome.wustl.edu	37	chr4	55561716	55561716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgagtccaggggaaccgtctCcaccatccatccatccagga	9	15	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	55561716	55561716	C	A	SNP	KIT	ENST00000288135	human	ensembl	69_37n	1	known	missense	c.106	p.P36T	0.051	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	KIT	HGNC	ENSG00000157404	247	0	0	194	51	20.82	-	-	-	A	55561716	C	A	55561716	3	1	652	1	0	0	0	0	1	0	0	0	8382	855	30	2	112	2	KIT	4	55561716	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	7420705	55561716	135592560	67	55740										
TECRL	0	genome.wustl.edu	37	chr4	65145813	65145813	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caatatgaatggaatcattgCtgattttctatgaatatatg	7	4	2	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	65145813	65145813	C	A	SNP	TECRL	ENST00000381210	human	ensembl	69_37n	-1	known	missense	c.1069	p.A357S	1.000	pfam_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	180	0	0	72	13	14.94	-	-	-	A	65145813	C	A	65145813	3	1	652	1	0	0	0	0	1	0	0	0	15841	797	28	4	26	4	TECRL	4	65145813	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	9584097	65145813	126008463	68	55741										
SCARB2	0	genome.wustl.edu	37	chr4	77100771	77100771	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gagcaattcgtcaactgtgtGagtcacaaagagcttctgct	10	9	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	77100771	77100771	G	C	SNP	SCARB2	ENST00000264896	human	ensembl	69_37n	-1	known	missense	c.511	p.H171D	0.995	pfam_CD36,prints_LimpII	pfam_CD36,superfamily_NA-bd_OB-fold-like,prints_LimpII,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB2	HGNC	ENSG00000138760	173	0	0	310	106	25.42	-	-	-	C	77100771	G	C	77100771	3	2	652	1	0	0	0	0	1	0	0	0	13969	1290	45	2	961	2	SCARB2	4	77100771	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	11954958	77100771	114053505	69	55742										
HERC6	0	genome.wustl.edu	37	chr4	89345780	89345780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cccccagtcctgttattttcAgtgattttccatttatcttt	4	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	89345780	89345780	A	G	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.1861	p.S621G	0.989	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	208	0	0	108	53	32.92	-	-	-	G	89345780	A	G	89345780	3	3	652	1	0	0	0	0	1	0	0	0	7113	188	7	5	1716	5	HERC6	4	89345780	Missense_Mutation	SNP	A	TCGA-C8-A1HM-01A-12D-A135-09	12245009	89345780	101808496	70	55743										
C4orf17	0	genome.wustl.edu	37	chr4	100460508	100460508	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagtgctgaccagagatacaGaaggggatcaaccaaccagg	12	9	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	100460508	100460508	G	C	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	missense	c.817	p.E273Q	0.178	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	233	0	0	151	42	21.76	-	-	-	C	100460508	G	C	100460508	3	2	652	1	0	0	0	0	1	0	0	0	2273	943	33	2	839	2	C4orf17	4	100460508	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	11114728	100460508	90693768	71	55744										
CENPE	0	genome.wustl.edu	37	chr4	104061230	104061230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagttcttttttctgaagttCttggatcttgagataattgt	8	4	4	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	104061230	104061230	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.5920	p.E1974Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	199	0	0	145	18	11.04	-	-	-	G	104061230	C	G	104061230	3	3	652	1	0	0	0	0	1	0	0	0	3259	922	32	2	2233	2	CENPE	4	104061230	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3600722	104061230	87093046	72	55745										
SEC24B	0	genome.wustl.edu	37	chr4	110384524	110384524	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctagtgtttcatatccctctCtgcctgctggtgatacatat	7	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	110384524	110384524	C	T	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	silent	c.601	p.L201	0.998	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	649	0	0	394	189	32.42	-	-	-	T	110384524	C	T	110384524	2	4	652	1	0	0	0	0	0	0	0	1	14083	912	32	2		2	SEC24B	4	110384524	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6323294	110384524	80769752	73	55746										
ADAD1	0	genome.wustl.edu	37	chr4	123332460	123332460	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	attttgtacagaaccaacttCtaatctactcactcttaaac	2	11	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	123332460	123332460	C	G	SNP	ADAD1	ENST00000296513	human	ensembl	69_37n	1	known	missense	c.932	p.S311C	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	283	0	0	602	80	11.7	-	-	-	G	123332460	C	G	123332460	3	3	652	1	0	0	0	0	1	0	0	0	231	913	32	2	958	2	ADAD1	4	123332460	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	12947936	123332460	67821816	74	55747										
PCDH10	0	genome.wustl.edu	37	chr4	134073569	134073569	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctggccagcgattgctgcctCtgctgctgctgctgcggtgg	15	13	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	134073569	134073569	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.2274	p.L758	0.999	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	54	0	0	68	11	13.75	-	-	-	T	134073569	C	T	134073569	2	4	652	1	0	0	0	0	0	0	0	1	11580	900	32	2		2	PCDH10	4	134073569	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	10741109	134073569	57080707	75	55748										
HAND2	0	genome.wustl.edu	37	chr4	174449901	174449901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctgaccagctccttcttcctCttctcctctttcacgtcggt	5	17	5	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	174449901	174449901	C	G	SNP	HAND2	ENST00000359562	human	ensembl	69_37n	-1	known	missense	c.540	p.K180N	0.995	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	HAND2	HGNC	ENSG00000164107	330	0	0	141	53	27.18	-	-	-	G	174449901	C	G	174449901	3	3	652	1	0	0	0	0	1	0	0	0	7001	912	32	2	121	2	HAND2	4	174449901	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	40376332	174449901	16704375	76	55749										
ADAM29	0	genome.wustl.edu	37	chr4	175896863	175896863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgccctttggaggccagaaaCacattatccacataaaggtc	8	11	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	4	175896863	175896863	C	T	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.187	p.H63Y	0.001	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	104	0	0	28	13	31.71	-	-	-	T	175896863	C	T	175896863	3	4	652	1	0	0	0	0	1	0	0	0	247	478	17	4	189	4	ADAM29	4	175896863	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1446962	175896863	15257413	77	55750										
EXOC3	0	genome.wustl.edu	37	chr5	453877	453877	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agaaaatgttcaccatcttgGagaggactgtgaccaccaga	10	9	2	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	453877	453877	G	C	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	missense	c.757	p.E253Q	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	212	0	0	182	25	12.02	-	-	-	C	453877	G	C	453877	3	2	652	1	0	0	0	0	1	0	0	0	5339	1175	41	2	767	2	EXOC3	5	453877	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		453877	180461383	78	55751										
C5orf51	0	genome.wustl.edu	37	chr5	41909903	41909903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctagtagatgaagattttcCtgaagactcttcttcacaga	8	8	3	6			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	41909903	41909903	C	T	SNP	C5orf51	ENST00000381647	human	ensembl	69_37n	1	known	missense	c.263	p.P88L	1.000	NULL	NULL	-	no_errors	C5orf51	HGNC	ENSG00000205765	122	0	0	90	17	15.89	-	-	-	T	41909903	C	T	41909903	3	4	652	1	0	0	0	0	1	0	0	0	2329	681	24	4	273	4	C5orf51	5	41909903	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	41456026	41909903	139005357	79	55752										
HMGCS1	0	genome.wustl.edu	37	chr5	43294891	43294891	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcctttgttttctgactgaaGagttcagagctagccttcat	9	9	3	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	43294891	43294891	G	C	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	silent	c.978	p.L326	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	473	0	0	484	101	17.26	-	-	-	C	43294891	G	C	43294891	2	2	652	1	0	0	0	0	0	0	0	1	7283	929	33	2		2	HMGCS1	5	43294891	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1384988	43294891	137620369	80	55753										
SLC38A9	0	genome.wustl.edu	37	chr5	54931483	54931483	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	taagcaatgcacaagtccctCacctgtaaatacagaacaaa	5	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	54931483	54931483	C	T	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	silent	c.1170	p.V390	0.989	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	239	0	0	227	78	25.49	-	-	-	T	54931483	C	T	54931483	2	4	652	1	0	0	0	0	0	0	0	1	14700	813	29	2		2	SLC38A9	5	54931483	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	11636592	54931483	125983777	81	55754										
TMEM167A	0	genome.wustl.edu	37	chr5	82360907	82360907	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ataagcagcaagattacagtCaatagactctgaaaattgaa	7	6	2	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	82360907	82360907	C	G	SNP	TMEM167A	ENST00000502346	human	ensembl	69_37n	-1	known	missense	c.33	p.L11F	1.000	pfam_DUF1242	pfam_DUF1242	-	no_errors	TMEM167A	HGNC	ENSG00000174695	159	0	0	98	26	20.97	-	-	-	G	82360907	C	G	82360907	3	3	652	1	0	0	0	0	1	0	0	0	16176	825	29	2	197	2	TMEM167A	5	82360907	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	27429424	82360907	98554353	82	55755										
MCTP1	0	genome.wustl.edu	37	chr5	94353075	94353075	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctcttatgctcttacctccTcgatctcgagcagctaaact	6	14	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	94353075	94353075	T	G	SNP	MCTP1	ENST00000515393	human	ensembl	69_37n	-1	known	silent	c.834	p.R278	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	217	0	0	151	30	16.48	-	-	-	G	94353075	T	G	94353075	2	3	652	1	0	0	0	0	0	0	0	1	9471	1538	54	5		5	MCTP1	5	94353075	Silent	SNP	T	TCGA-C8-A1HM-01A-12D-A135-09	11992168	94353075	86562185	83	55756										
SEC24A	0	genome.wustl.edu	37	chr5	134011803	134011803	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gggctgctgcttcatcctttCaaagacttagtggtatgttt	10	8	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	134011803	134011803	C	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	silent	c.1242	p.F414	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	254	0	0	161	30	15.62	-	-	-	T	134011803	C	T	134011803	2	4	652	1	0	0	0	0	0	0	0	1	14082	825	29	2		2	SEC24A	5	134011803	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	39658728	134011803	46903457	84	55757										
PCDHA7	0	genome.wustl.edu	37	chr5	140215216	140215216	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gacagcgctctggaccgcgaGagtgtgtccgcctatgagct	14	12	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	140215216	140215216	G	C	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.1248	p.E416D	0.798	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	93	0	0	86	21	19.63	-	-	-	C	140215216	G	C	140215216	3	2	652	1	0	0	0	0	1	0	0	0	11602	933	33	2	1250	2	PCDHA7	5	140215216	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	6203413	140215216	40700044	85	55758										
SPINK5	0	genome.wustl.edu	37	chr5	147493927	147493927	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cttttcttttccttttaggaGacatgcgatgaatttcggag	9	7	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	147493927	147493927	G	T	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	missense	c.1890	p.E630D	0.016	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	117	1	0.85	78	11	12.36	-	-	-	T	147493927	G	T	147493927	3	4	652	1	0	0	0	0	1	0	0	0	15153	933	33	2	1972	2	SPINK5	5	147493927	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7278711	147493927	33421333	86	55759										
ATP10B	0	genome.wustl.edu	37	chr5	160025900	160025900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagaagagattgaagaatatCatctgccagtaatcaatcat	7	6	4	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	160025900	160025900	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.3441	p.M1147I	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	186	0	0	142	37	20.56	-	-	-	T	160025900	C	T	160025900	3	4	652	1	0	0	0	0	1	0	0	0	1121	826	29	2	964	2	ATP10B	5	160025900	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	12531973	160025900	20889360	87	55760										
FGFR4	0	genome.wustl.edu	37	chr5	176523632	176523632	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tttgggatcctgctatgggaGatcttcaccctcgggggctc	13	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	5	176523632	176523632	G	A	SNP	FGFR4	ENST00000292408	human	ensembl	69_37n	1	known	silent	c.2043	p.E681	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR4	HGNC	ENSG00000160867	98	0	0	49	23	31.94	-	-	-	A	176523632	G	A	176523632	2	1	652	1	0	0	0	0	0	0	0	1	5914	933	33	2		2	FGFR4	5	176523632	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	16497732	176523632	4391628	88	55761										
RIPK1	0	genome.wustl.edu	37	chr6	3111036	3111036	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgtgtgtttctctctatgcaGatgaatctataaaatatacc	6	7	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	3111036	3111036	G	A	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	splice_site	c.1577-1	e9-1	0.999	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	196	0	0	156	23	12.71	-	-	-	A	3111036	G	A	3111036	5	1	652	1	0	0	0	0	0	0	1	0	13466	956	33	2	1610	2	RIPK1	6	3111036	Splice_Site	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		3111036	168004031	89	55762										
RNF182	0	genome.wustl.edu	37	chr6	13978083	13978083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aatttctagactgtatggcaCctccttcttaactgatatgc	6	10	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	13978083	13978083	C	A	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.733	p.P245T	0.982	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	340	0	0	268	45	14.33	-	-	-	A	13978083	C	A	13978083	3	1	652	1	0	0	0	0	1	0	0	0	13552	507	18	4	735	4	RNF182	6	13978083	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	10867047	13978083	157136984	90	55763										
GPLD1	0	genome.wustl.edu	37	chr6	24472849	24472849	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	taaaattaaattcaaactggCtcaacacatctcctcctagg	4	11	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	24472849	24472849	C	G	SNP	GPLD1	ENST00000230036	human	ensembl	69_37n	-1	known	missense	c.506	p.S169T	1.000	prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293	222	0	0	189	64	25.3	-	-	-	G	24472849	C	G	24472849	3	3	652	1	0	0	0	0	1	0	0	0	6664	797	28	4	2092	4	GPLD1	6	24472849	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	10494766	24472849	146642218	91	55764										
HIST1H4E	0	genome.wustl.edu	37	chr6	26205022	26205022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtcaagcgcatttctggtctCatctacgaggagactcgcgg	12	11	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	26205022	26205022	C	T	SNP	HIST1H4E	ENST00000360441	human	ensembl	69_37n	1	known	silent	c.150	p.L50	0.997	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518	259	0	0	248	45	15.36	-	-	-	T	26205022	C	T	26205022	2	4	652	1	0	0	0	0	0	0	0	1	7220	813	29	2		2	HIST1H4E	6	26205022	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1732173	26205022	144910045	92	55765										
SCAND3	0	genome.wustl.edu	37	chr6	28540923	28540923	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaacctcacatagactaaaaGaattatcatgttagcaatat	4	7	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	28540923	28540923	G	C	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.2743	p.L915V	1.000	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	220	0	0	174	74	29.84	-	-	-	C	28540923	G	C	28540923	3	2	652	1	0	0	0	0	1	0	0	0	13963	942	33	2	1238	2	SCAND3	6	28540923	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2335901	28540923	142574144	93	55766										
ITPR3	0	genome.wustl.edu	37	chr6	33662776	33662776	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agggcgagggggagcagaatGagattcggattctccaggac	17	7	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	33662776	33662776	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.7861	p.E2621K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	97	0	0	45	65	59.09	-	-	-	A	33662776	G	A	33662776	3	1	652	1	0	0	0	0	1	0	0	0	7976	1291	45	2	8087	2	ITPR3	6	33662776	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	5121853	33662776	137452291	94	55767										
MRPL2	0	genome.wustl.edu	37	chr6	43025966	43025966	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgttggaggaggccattgttCatcatctagggataaaaaga	12	5	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	43025966	43025966	C	T	SNP	MRPL2	ENST00000388752	human	ensembl	69_37n	-1	known	missense	c.102	p.M34I	0.008	NULL	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like	-	no_errors	MRPL2	HGNC	ENSG00000112651	429	0	0	382	58	13.18	-	-	-	T	43025966	C	T	43025966	3	4	652	1	0	0	0	0	1	0	0	0	9857	826	29	2	839	2	MRPL2	6	43025966	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	9363190	43025966	128089101	95	55768										
ABCC10	0	genome.wustl.edu	37	chr6	43409655	43409655	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaagggtgtcacccttagcgGaggacagcgtgcccggattg	16	10	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	43409655	43409655	G	C	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.2183	p.G728A	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	162	0	0	190	27	12.44	-	-	-	C	43409655	G	C	43409655	3	2	652	1	0	0	0	0	1	0	0	0	50	1174	41	2	2125	2	ABCC10	6	43409655	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	383689	43409655	127705412	96	55769										
CLIC5	0	genome.wustl.edu	37	chr6	46047913	46047914	+	Frame_Shift_Ins	INS	-	-	GG													0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcattttcttctggctggtcINStggaacctcatacgtcctct							TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	46047913	46047914	-	GG	INS	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	frame_shift_ins	c.67_66	p.D22fs	0.909:0.932	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782	240	0	0	157	79	33.47	-	-	-	GG	46047914	-	GG	46047913	7	5	652	1	0	1	1	0	0	0	0	0	3559	913	32	0	1256	0	CLIC5	6	46047913	Frame_Shift_Ins	INS	-	TCGA-C8-A1HM-01A-12D-A135-09	2638258	46047913	125067154	97	55770	440	2								
CLIC5	0	genome.wustl.edu	37	chr6	46047914	46047915	+	Frame_Shift_Ins	INS	-	-	CG													0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cattttcttctggctggtctINSggaacctcatacgtcctctc							TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	46047914	46047915	-	CG	INS	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	frame_shift_ins	c.66_65	p.D23fs	0.932:0.946	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782	239	0	0	145	78	34.98	-	-	-	CG	46047915	-	CG	46047914	7	5	652	1	0	1	1	0	0	0	0	0	3559	1567	55	0	1257	0	CLIC5	6	46047914	Frame_Shift_Ins	INS	-	TCGA-C8-A1HM-01A-12D-A135-09	1	46047914	125067153	98	55771	440	2								
CD2AP	0	genome.wustl.edu	37	chr6	47541929	47541929	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agacatttttaaagaaggctCtgtgaaacttcggacaagaa	9	6	1	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	47541929	47541929	C	G	SNP	CD2AP	ENST00000359314	human	ensembl	69_37n	1	known	missense	c.671	p.S224C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	226	0	0	211	35	14.23	-	-	-	G	47541929	C	G	47541929	3	3	652	1	0	0	0	0	1	0	0	0	3023	913	32	2	693	2	CD2AP	6	47541929	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1494015	47541929	123573138	99	55772										
HCRTR2	0	genome.wustl.edu	37	chr6	55142342	55142342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcccggatgttgatgattgtGcttttggtatttgcaatttg	12	5	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	55142342	55142342	G	A	SNP	HCRTR2	ENST00000370862	human	ensembl	69_37n	1	known	silent	c.927	p.V309	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252	298	0	0	264	67	20.18	-	-	-	A	55142342	G	A	55142342	2	1	652	1	0	0	0	0	0	0	0	1	7053	1306	46	4		4	HCRTR2	6	55142342	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7600413	55142342	115972725	100	55773										
EYS	0	genome.wustl.edu	37	chr6	64940650	64940650	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gacagaagtccacatggtatCaaccccttgtgtcacatcag	8	12	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	64940650	64940650	C	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.6259	p.D2087Y	0.004	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	123	0	0	130	20	13.33	-	-	-	A	64940650	C	A	64940650	3	1	652	1	0	0	0	0	1	0	0	0	5369	826	29	2	3227	2	EYS	6	64940650	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	9798308	64940650	106174417	101	55774										
RIMS1	0	genome.wustl.edu	37	chr6	73110378	73110378	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggcgggcttcccagtcatctCtggaaagttcaactgggcct	12	12	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	73110378	73110378	C	G	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.5041	p.L1681V	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	168	0	0	124	37	22.98	-	-	-	G	73110378	C	G	73110378	3	3	652	1	0	0	0	0	1	0	0	0	13453	912	32	2	5338	2	RIMS1	6	73110378	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	8169728	73110378	98004689	102	55775										
COL12A1	0	genome.wustl.edu	37	chr6	75893674	75893674	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctggtattctgtgtctgctGagaggtcgcgaacactgagc	13	9	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	75893674	75893674	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.1184	p.S395L	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	229	0	0	281	48	14.59	-	-	-	A	75893674	G	A	75893674	3	1	652	1	0	0	0	0	1	0	0	0	3699	1294	45	2	8239	2	COL12A1	6	75893674	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2783296	75893674	95221393	103	55776										
SCML4	0	genome.wustl.edu	37	chr6	108041958	108041958	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctcttggggctggaggctgGaggcctcagcccaggtgccg	17	12	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	108041958	108041958	G	C	SNP	SCML4	ENST00000369021	human	ensembl	69_37n	-1	known	missense	c.835	p.P279A	0.999	NULL	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285	96	0	0	111	14	11.2	-	-	-	C	108041958	G	C	108041958	3	2	652	1	0	0	0	0	1	0	0	0	13999	1174	41	2	334	2	SCML4	6	108041958	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	32148284	108041958	63073109	104	55777										
FAM26F	0	genome.wustl.edu	37	chr6	116784770	116784770	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acaaatatgtcaacagaaaaGagaagactcacagtatcagg	8	7	3	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	116784770	116784770	G	C	SNP	FAM26F	ENST00000368605	human	ensembl	69_37n	1	known	missense	c.850	p.E284Q	0.002	NULL	NULL	-	no_errors	FAM26F	HGNC	ENSG00000188820	181	0	0	120	119	49.79	-	-	-	C	116784770	G	C	116784770	3	2	652	1	0	0	0	0	1	0	0	0	5597	943	33	2	856	2	FAM26F	6	116784770	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	8742812	116784770	54330297	105	55778										
SGK1	0	genome.wustl.edu	37	chr6	134498933	134498933	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agcctccctgctacatgcctCtgataagctggaactctgag	9	13	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	134498933	134498933	C	T	SNP	SGK1	ENST00000528577	human	ensembl	69_37n	-1	known	missense	c.28	p.E10K	0.038	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	240	0	0	282	41	12.69	-	-	-	T	134498933	C	T	134498933	3	4	652	1	0	0	0	0	1	0	0	0	14295	922	32	2	1601	2	SGK1	6	134498933	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	17714163	134498933	36616134	106	55779										
IL20RA	0	genome.wustl.edu	37	chr6	137323193	137323193	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccgggggtattgttctgctGagggactcttgctgggtgag	17	7	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	137323193	137323193	G	A	SNP	IL20RA	ENST00000316649	human	ensembl	69_37n	-1	known	silent	c.1164	p.L388	0.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL20RA	HGNC	ENSG00000016402	127	0	0	93	13	12.26	-	-	-	A	137323193	G	A	137323193	2	1	652	1	0	0	0	0	0	0	0	1	7722	1277	45	2		2	IL20RA	6	137323193	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2824260	137323193	33791874	107	55780										
PEX3	0	genome.wustl.edu	37	chr6	143806383	143806383	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaacacctagtcattttgttCaggtaagaagaaagcttggg	10	6	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	143806383	143806383	C	G	SNP	PEX3	ENST00000367591	human	ensembl	69_37n	1	known	missense	c.1036	p.Q346E	1.000	pfam_Peroxin-3	pfam_Peroxin-3	-	no_errors	PEX3	HGNC	ENSG00000034693	302	0	0	192	189	49.35	-	-	-	G	143806383	C	G	143806383	3	3	652	1	0	0	0	0	1	0	0	0	11821	827	29	2	1078	2	PEX3	6	143806383	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6483190	143806383	27308684	108	55781										
SYNE1	0	genome.wustl.edu	37	chr6	152706962	152706962	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcacaatctcttccactttCctcattttttcctagtaaac	1	13	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	152706962	152706962	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.8499	p.R2833	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	221	0	0	239	52	17.87	-	-	-	T	152706962	C	T	152706962	2	4	652	1	0	0	0	0	0	0	0	1	15537	854	30	2		2	SYNE1	6	152706962	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	8900579	152706962	18408105	109	55782										
TIAM2	0	genome.wustl.edu	37	chr6	155450974	155450974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtactcacctaccttagcatCggaaacctcccctgtgcctg	7	16	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	155450974	155450974	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.617	p.S206L	0.019	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	16	0	0	13	11	44	-	-	-	T	155450974	C	T	155450974	3	4	652	1	0	0	0	0	1	0	0	0	15986	893	31	1	619	1	TIAM2	6	155450974	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2744012	155450974	15664093	110	55783										
PARK2	0	genome.wustl.edu	37	chr6	161969928	161969928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccttcgcaggtgactttcctCtggtcaggctccggcagcag	12	14	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	6	161969928	161969928	C	G	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	missense	c.1041	p.Q347H	0.004	pfam_Znf_C6HC,smart_Znf_C6HC,pirsf_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	58	0	0	26	17	39.53	-	-	-	G	161969928	C	G	161969928	3	3	652	1	0	0	0	0	1	0	0	0	11522	912	32	2	372	2	PARK2	6	161969928	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6518954	161969928	9145139	111	55784										
STK31	0	genome.wustl.edu	37	chr7	23809284	23809284	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgacctatctgtggaaggatCactgatttcagaagacgcaa	10	8	3	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	23809284	23809284	C	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.1622	p.S541L	0.048	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	394	0	0	366	66	15.28	-	-	-	T	23809284	C	T	23809284	3	4	652	1	0	0	0	0	1	0	0	0	15387	838	29	2	1672	2	STK31	7	23809284	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		23809284	135329379	112	55785										
CRHR2	0	genome.wustl.edu	37	chr7	30706918	30706918	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cccattctccaagcattctcGataggcattccctacaaaaa	4	14	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	30706918	30706918	G	C	SNP	CRHR2	ENST00000348438	human	ensembl	69_37n	-1	known	missense	c.322	p.R108G	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_diuretic_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR2	HGNC	ENSG00000106113	277	0	0	199	117	37.03	-	-	-	C	30706918	G	C	30706918	3	2	652	1	0	0	0	0	1	0	0	0	3902	1066	37	3	1034	3	CRHR2	7	30706918	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	6897634	30706918	128431745	113	55786										
MLXIPL	0	genome.wustl.edu	37	chr7	73011917	73011917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcctggcaccttggcaggggGagggtaatgcagcagaggtg	19	8	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	73011917	73011917	G	A	SNP	MLXIPL	ENST00000313375	human	ensembl	69_37n	-1	known	missense	c.1198	p.P400S	0.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLXIPL	HGNC	ENSG00000009950	18	0	0	20	8	28.57	-	-	-	A	73011917	G	A	73011917	3	1	652	1	0	0	0	0	1	0	0	0	9708	1174	41	2	1396	2	MLXIPL	7	73011917	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	42304999	73011917	86126746	114	55787										
POR	0	genome.wustl.edu	37	chr7	75609733	75609735	+	In_Frame_Del	DEL	CCA	CCA	-													0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cacctacggtgagggagaccCcaccgacaatgcccaggact							TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	75609733	75609735	CCA	-	DEL	POR	ENST00000461988	human	ensembl	69_37n	1	known	in_frame_del	c.443_445	p.T149in_frame_del	1.000:0.998:1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	POR	HGNC	ENSG00000127948	55	0	0	59	9	13.04	-	-	-	-	75609735	CCA	-	75609733	7	5	652	1	0	1	0	1	0	0	0	0	12331	623	22	0	457	0	POR	7	75609733	In_Frame_Del	DEL	CCA	TCGA-C8-A1HM-01A-12D-A135-09	2597816	75609733	83528930	115	55788										
PCLO	0	genome.wustl.edu	37	chr7	82784780	82784780	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctttccaactccaggaggctGagctaaagcctttggcccag	10	13	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	82784780	82784780	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	nonsense	c.1177	p.Q393*	0.846	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	238	0	0	159	25	13.59	-	-	-	A	82784780	G	A	82784780	4	1	652	1	0	0	0	0	0	1	0	0	11656	1299	45	2	14364	2	PCLO	7	82784780	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7175047	82784780	76353883	116	55789										
EPHB4	0	genome.wustl.edu	37	chr7	100405049	100405049	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaatcgggaaaggccaaagtCagacactttgcagacgaggt	13	8	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	100405049	100405049	C	G	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	missense	c.2272	p.D758H	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	233	0	0	112	84	42	-	-	-	G	100405049	C	G	100405049	3	3	652	1	0	0	0	0	1	0	0	0	5214	826	29	2	711	2	EPHB4	7	100405049	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	17620269	100405049	58733614	117	55790										
LAMB1	0	genome.wustl.edu	37	chr7	107577624	107577624	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tttcggcttctgtctgtagaGaatccagttctttggctgtg	11	8	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	107577624	107577624	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.3860	p.S1287F	0.658	superfamily_t-SNARE	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	623	0	0	283	339	54.41	-	-	-	A	107577624	G	A	107577624	3	1	652	1	0	0	0	0	1	0	0	0	8664	942	33	2	1536	2	LAMB1	7	107577624	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7172575	107577624	51561039	118	55791										
CAV1	0	genome.wustl.edu	37	chr7	116199333	116199333	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccgcatcaacttgcagaaaGaaatataaatgacatttcaa	5	8	2	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	116199333	116199333	G	C	SNP	CAV1	ENST00000341049	human	ensembl	69_37n	1	known	missense	c.529	p.E177Q	1.000	NULL	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974	161	0	0	112	24	17.65	-	-	-	C	116199333	G	C	116199333	3	2	652	1	0	0	0	0	1	0	0	0	2718	943	33	2	539	2	CAV1	7	116199333	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	8621709	116199333	42939330	119	55792										
CHCHD3	0	genome.wustl.edu	37	chr7	132470412	132470412	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagtttttatcctcccttctCaagcatgctctgcaagaaaa	5	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	132470412	132470412	C	G	SNP	CHCHD3	ENST00000262570	human	ensembl	69_37n	-1	known	missense	c.670	p.E224Q	0.991	NULL	pfam_DUF737	-	no_errors	CHCHD3	HGNC	ENSG00000106554	461	0	0	181	204	52.85	-	-	-	G	132470412	C	G	132470412	3	3	652	1	0	0	0	0	1	0	0	0	3346	835	29	2	17	2	CHCHD3	7	132470412	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	16271079	132470412	26668251	120	55793										
EXOC4	0	genome.wustl.edu	37	chr7	133160142	133160142	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cggcctctgaaccatcagctCaactaagctatgccagcact	7	15	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	133160142	133160142	C	G	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.1243	p.Q415E	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	184	0	0	172	31	15.27	-	-	-	G	133160142	C	G	133160142	3	3	652	1	0	0	0	0	1	0	0	0	5342	827	29	2	1273	2	EXOC4	7	133160142	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	689730	133160142	25978521	121	55794										
SLC4A2	0	genome.wustl.edu	37	chr7	150765003	150765003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgctcctggacaaaaaccagGagccccagtggcgggagaca	13	12	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	150765003	150765003	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.1009	p.E337K	1.000	superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	99	0	0	83	27	24.55	-	-	-	A	150765003	G	A	150765003	3	1	652	1	0	0	0	0	1	0	0	0	14743	1175	41	2	1035	2	SLC4A2	7	150765003	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	17604861	150765003	8373660	122	55795										
ABCF2	0	genome.wustl.edu	37	chr7	150922031	150922031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acagctcgagcagcagctttCttcatctcaaagtcctctag	7	13	4	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	7	150922031	150922031	C	G	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	missense	c.198	p.K66N	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	252	0	0	182	47	20.52	-	-	-	G	150922031	C	G	150922031	3	3	652	1	0	0	0	0	1	0	0	0	66	912	32	2	1766	2	ABCF2	7	150922031	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	157028	150922031	8216632	123	55796										
SOX7	0	genome.wustl.edu	37	chr8	10587809	10587809	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaggcgttcatgggccgccgGatacggctctcggagccctt	14	13	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	10587809	10587809	G	A	SNP	SOX7	ENST00000304501	human	ensembl	69_37n	-1	known	silent	c.135	p.I45	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Sox_C_TAD,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX7	HGNC	ENSG00000171056	12	0	0	9	9	50	-	-	-	A	10587809	G	A	10587809	2	1	652	1	0	0	0	0	0	0	0	1	15045	1164	41	2		2	SOX7	8	10587809	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		10587809	135776213	124	55797										
PBK	0	genome.wustl.edu	37	chr8	27668640	27668640	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgtgccaatgtaacaagcctCagggtcagtcactgaaacaa	9	10	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	27668640	27668640	C	T	SNP	PBK	ENST00000301905	human	ensembl	69_37n	-1	known	missense	c.607	p.E203K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PBK	HGNC	ENSG00000168078	229	0	0	143	38	20.99	-	-	-	T	27668640	C	T	27668640	3	4	652	1	0	0	0	0	1	0	0	0	11561	835	29	2	369	2	PBK	8	27668640	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	17080831	27668640	118695382	125	55798										
VCPIP1	0	genome.wustl.edu	37	chr8	67578968	67578968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagctgttgctgctcgtgccGctggccgcactcggtacact	12	15	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	67578968	67578968	G	C	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.226	p.R76G	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	74	0	0	111	26	18.71	-	-	-	C	67578968	G	C	67578968	3	2	652	1	0	0	0	0	1	0	0	0	17238	1086	38	3	3454	3	VCPIP1	8	67578968	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	39910328	67578968	78785054	126	55799										
KCNB2	0	genome.wustl.edu	37	chr8	73480416	73480416	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caaaaaaaagaacaaatgaaCgaagaactgaggcgagaggc	11	6	0	5			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	73480416	73480416	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	silent	c.447	p.N149	0.175	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	180	0	0	115	111	48.9	-	-	-	T	73480416	C	T	73480416	2	4	652	1	0	0	0	0	0	0	0	1	8067	535	19	1		1	KCNB2	8	73480416	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5901448	73480416	72883606	127	55800										
TPD52	0	genome.wustl.edu	37	chr8	80965638	80965638	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctcttttgctgctaacacttGagacagagtctggatttctt	8	9	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	80965638	80965638	G	C	SNP	TPD52	ENST00000521354	human	ensembl	69_37n	-1	known	nonsense	c.47	p.S16*	1.000	NULL	NULL	-	no_errors	TPD52	HGNC	ENSG00000076554	417	0	0	561	111	16.52	-	-	-	C	80965638	G	C	80965638	4	2	652	1	0	0	0	0	0	1	0	0	16493	1299	45	2	484	2	TPD52	8	80965638	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7485222	80965638	65398384	128	55801										
PTDSS1	0	genome.wustl.edu	37	chr8	97274286	97274286	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gccatggcgtcctgcgtgggGagccggaccctaagcaagga	16	12	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	97274286	97274286	G	C	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	silent	c.18	p.G6	1.000	NULL	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	100	0	0	129	37	22.29	-	-	-	C	97274286	G	C	97274286	2	2	652	1	0	0	0	0	0	0	0	1	12816	1161	41	2		2	PTDSS1	8	97274286	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	16308648	97274286	49089736	129	55802										
ZFPM2	0	genome.wustl.edu	37	chr8	106814537	106814537	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcaagcgcagaaagatgtatGagatgtgcctacctgagcag	13	8	0	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	106814537	106814537	G	T	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	nonsense	c.2227	p.E743*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	114	0	0	107	15	12.3	-	-	-	T	106814537	G	T	106814537	4	4	652	1	0	0	0	0	0	1	0	0	17754	1291	45	2	2257	2	ZFPM2	8	106814537	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	9540251	106814537	39549485	130	55803										
ANGPT1	0	genome.wustl.edu	37	chr8	108359272	108359272	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtgtggttctgaactgcattCtgctgtatctgggccatctc	11	10	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	108359272	108359272	C	G	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.351	p.Q117H	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	439	0	0	528	82	13.42	-	-	-	G	108359272	C	G	108359272	3	3	652	1	0	0	0	0	1	0	0	0	610	912	32	2	1177	2	ANGPT1	8	108359272	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1544735	108359272	38004750	131	55804										
PKHD1L1	0	genome.wustl.edu	37	chr8	110523136	110523136	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agtcctcagaatcttcgactGatgttgcttaatgttgatca	8	8	3	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	110523136	110523136	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.11526	p.L3842	0.999	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	268	0	0	133	170	55.92	-	-	-	C	110523136	G	C	110523136	2	2	652	1	0	0	0	0	0	0	0	1	12046	1277	45	2		2	PKHD1L1	8	110523136	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2163864	110523136	35840886	132	55805										
ATAD2	0	genome.wustl.edu	37	chr8	124346529	124346529	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttatggcataggcagtatctCttaaagcacaggctctatgc	9	9	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	124346529	124346529	C	G	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.3245	p.R1082T	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	219	0	0	147	210	58.66	-	-	-	G	124346529	C	G	124346529	3	3	652	1	0	0	0	0	1	0	0	0	1075	913	32	2	951	2	ATAD2	8	124346529	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	13823393	124346529	22017493	133	55806										
PHF20L1	0	genome.wustl.edu	37	chr8	133836315	133836315	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aacagcatttggtatgaacaGaaagtaatctttaagcaaaa	7	5	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	133836315	133836315	G	C	SNP	PHF20L1	ENST00000395383	human	ensembl	69_37n	1	novel	missense	c.1658	p.R553T	1.000	NULL	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	233	0	0	271	63	18.86	-	-	-	C	133836315	G	C	133836315	3	2	652	1	0	0	0	0	1	0	0	0	11906	957	33	2		2	PHF20L1	8	133836315	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	9489786	133836315	12527707	134	55807										
PTK2	0	genome.wustl.edu	37	chr8	141900716	141900716	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	actattgctttcaaaataatGaaagacctttaatactcgct	4	8	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	141900716	141900716	G	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.121	p.H41Y	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	143	0	0	209	49	18.99	-	-	-	A	141900716	G	A	141900716	3	1	652	1	0	0	0	0	1	0	0	0	12843	1290	45	2	3157	2	PTK2	8	141900716	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	8064401	141900716	4463306	135	55808										
CYP11B2	0	genome.wustl.edu	37	chr8	143993476	143993476	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaccatctttatgtcctcttGagttagtgtctccaccagga	8	11	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	143993476	143993476	G	C	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1432	p.Q478E	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	381	0	0	318	309	49.2	-	-	-	C	143993476	G	C	143993476	3	2	652	1	0	0	0	0	1	0	0	0	4177	1299	45	2	83	2	CYP11B2	8	143993476	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2092760	143993476	2370546	136	55809										
OPLAH	0	genome.wustl.edu	37	chr8	145112528	145112528	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcctcaggggaaagtggttgGttctctcccggcccaaaaat	12	11	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	8	145112528	145112528	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	38	0	0	27	25	47.17	-	-	-	A	145112528	G	A	145112528	1	1	652	0	1	0	0	0	0	0	0	0	10949	1252	44	4		4	OPLAH	8	145112528	RNA	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1119052	145112528	1251494	137	55810										
SLC44A1	0	genome.wustl.edu	37	chr9	108127819	108127819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	catcagtaaatcgccttattCgttaccacctaggtacggtg	8	11	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	9	108127819	108127819	C	T	SNP	SLC44A1	ENST00000374720	human	ensembl	69_37n	1	known	missense	c.1309	p.R437C	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	290	0	0	113	171	60.21	-	-	-	T	108127819	C	T	108127819	3	4	652	1	0	0	0	0	1	0	0	0	14724	884	31	1	1351	1	SLC44A1	9	108127819	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		108127819	33085612	138	55811										
ZNF462	0	genome.wustl.edu	37	chr9	109688576	109688576	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agattgagctcaccctttctGaagatgaagaggattattat	9	6	2	6			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	9	109688576	109688576	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.2383	p.E795K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	173	0	0	95	38	28.57	-	-	-	A	109688576	G	A	109688576	3	1	652	1	0	0	0	0	1	0	0	0	18022	1291	45	2	2389	2	ZNF462	9	109688576	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1560757	109688576	31524855	139	55812										
LHX2	0	genome.wustl.edu	37	chr9	126794835	126794835	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctcggagctctccaacgcctCgctcagcccctccagcacgc	8	21	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	9	126794835	126794835	C	G	SNP	LHX2	ENST00000373615	human	ensembl	69_37n	1	known	missense	c.1070	p.S357W	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX2	HGNC	ENSG00000106689	101	0	0	60	27	31.03	-	-	-	G	126794835	C	G	126794835	3	3	652	1	0	0	0	0	1	0	0	0	8826	893	31	3	1088	3	LHX2	9	126794835	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	17106259	126794835	14418596	140	55813										
GARNL3	0	genome.wustl.edu	37	chr9	130097556	130097556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atactgtgtaccaagggcatGagatcatgtttcatgtttcc	9	8	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	9	130097556	130097556	G	C	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.817	p.E273Q	1.000	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	352	0	0	285	121	29.73	-	-	-	C	130097556	G	C	130097556	3	2	652	1	0	0	0	0	1	0	0	0	6291	1291	45	2	855	2	GARNL3	9	130097556	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	3302721	130097556	11115875	141	55814										
KLF6	0	genome.wustl.edu	37	chr10	3824269	3824269	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctggaggactggaagatatCttcagttcggattcctcctt	10	9	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	3824269	3824269	C	G	SNP	KLF6	ENST00000497571	human	ensembl	69_37n	-1	known	missense	c.240	p.K80N	0.880	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082	304	0	0	148	66	30.84	-	-	-	G	3824269	C	G	3824269	3	3	652	1	0	0	0	0	1	0	0	0	8403	912	32	2	623	2	KLF6	10	3824269	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		3824269	131710478	142	55815										
ECHDC3	0	genome.wustl.edu	37	chr10	11791544	11791544	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acttaaaggagctgacagagGagcaaggccgtgattaccat	12	8	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	11791544	11791544	G	C	SNP	ECHDC3	ENST00000379215	human	ensembl	69_37n	1	known	missense	c.343	p.E115Q	0.244	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC3	HGNC	ENSG00000134463	316	0	0	385	47	10.85	-	-	-	C	11791544	G	C	11791544	3	2	652	1	0	0	0	0	1	0	0	0	4930	1175	41	2	353	2	ECHDC3	10	11791544	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7967275	11791544	123743203	143	55816										
HSPA14	0	genome.wustl.edu	37	chr10	14891732	14891732	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atatgcagaaacggcacattCtgtattgggctcagatgcaa	10	8	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	14891732	14891732	C	G	SNP	HSPA14	ENST00000378372	human	ensembl	69_37n	1	known	missense	c.389	p.S130C	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	295	0	0	245	100	28.99	-	-	-	G	14891732	C	G	14891732	3	3	652	1	0	0	0	0	1	0	0	0	7460	913	32	2	411	2	HSPA14	10	14891732	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3100188	14891732	120643015	144	55817										
NEBL	0	genome.wustl.edu	37	chr10	21186095	21186095	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcccctatcttttcttcttCagtttcatcttttatatcct	1	12	6	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	21186095	21186095	C	T	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	missense	c.40	p.E14K	0.105	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	509	0	0	411	159	27.89	-	-	-	T	21186095	C	T	21186095	3	4	652	1	0	0	0	0	1	0	0	0	10375	835	29	2	3116	2	NEBL	10	21186095	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6294363	21186095	114348652	145	55818										
MTPAP	0	genome.wustl.edu	37	chr10	30602867	30602867	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaatggattctgaatgtacaGaggagaagaatcaggtttgt	12	3	2	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	30602867	30602867	G	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	missense	c.1810	p.L604V	0.762	pfam_PAP_assoc	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	55	0	0	18	9	33.33	-	-	-	C	30602867	G	C	30602867	3	2	652	1	0	0	0	0	1	0	0	0	10028	933	33	2	332	2	MTPAP	10	30602867	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	9416772	30602867	104931880	146	55819										
SFTPD	0	genome.wustl.edu	37	chr10	81706230	81706230	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	accctacctgggtcccccttCtcgccccgagggccctctct	8	21	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	81706230	81706230	C	A	SNP	SFTPD	ENST00000372292	human	ensembl	69_37n	-1	known	missense	c.186	p.E62D	1.000	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661	113	0	0	143	27	15.88	-	-	-	A	81706230	C	A	81706230	3	1	652	1	0	0	0	0	1	0	0	0	14281	912	32	2	969	2	SFTPD	10	81706230	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	51103363	81706230	53828517	147	55820										
NRG3	0	genome.wustl.edu	37	chr10	84738797	84738797	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccccgtcaccccgaagtaggCtaggtggaattgtgggacca	13	12	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	84738797	84738797	C	G	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	missense	c.1504	p.L502V	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	179	0	0	338	44	11.52	-	-	-	G	84738797	C	G	84738797	3	3	652	1	0	0	0	0	1	0	0	0	10722	796	28	4	1702	4	NRG3	10	84738797	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3032567	84738797	50795950	148	55821										
BLNK	0	genome.wustl.edu	37	chr10	97983711	97983711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttactgggaagtgtcttgctGaagggtggggaatgcctctg	16	6	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	97983711	97983711	G	A	SNP	BLNK	ENST00000224337	human	ensembl	69_37n	-1	known	silent	c.396	p.F132	0.999	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	BLNK	HGNC	ENSG00000095585	273	0	0	185	25	11.85	-	-	-	A	97983711	G	A	97983711	2	1	652	1	0	0	0	0	0	0	0	1	1452	1281	45	2		2	BLNK	10	97983711	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	13244914	97983711	37551036	149	55822										
PI4K2A	0	genome.wustl.edu	37	chr10	99416641	99416641	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	actattggctgcggcgttttGaagcagaacctcttcctgag	11	10	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	99416641	99416641	G	A	SNP	PI4K2A	ENST00000370631	human	ensembl	69_37n	1	known	missense	c.832	p.E278K	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	181	0	0	158	38	19	-	-	-	A	99416641	G	A	99416641	3	1	652	1	0	0	0	0	1	0	0	0	11945	1291	45	2	846	2	PI4K2A	10	99416641	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1432930	99416641	36118106	150	55823										
HPSE2	0	genome.wustl.edu	37	chr10	100374727	100374727	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcaaaaaatgagtgccgtatCacgacatcaatgccctgatt	7	10	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	100374727	100374727	C	G	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	silent	c.1254	p.V418	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	299	0	0	220	39	15	-	-	-	G	100374727	C	G	100374727	2	3	652	1	0	0	0	0	0	0	0	1	7396	813	29	2		2	HPSE2	10	100374727	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	958086	100374727	35160020	151	55824										
PDCD11	0	genome.wustl.edu	37	chr10	105200072	105200072	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	accaccagaagaacctggtaGagctgtctttcctccccgga	9	14	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	10	105200072	105200072	G	T	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	nonsense	c.4174	p.E1392*	0.588	superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	171	0	0	101	23	18.55	-	-	-	T	105200072	G	T	105200072	4	4	652	1	0	0	0	0	0	1	0	0	11690	943	33	2	4284	2	PDCD11	10	105200072	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	4825345	105200072	30334675	152	55825										
OR52E4	0	genome.wustl.edu	37	chr11	5905606	5905606	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctggacactttacatatctgGatttctttcccattctgtat	5	10	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	5905606	5905606	G	A	SNP	OR52E4	ENST00000316987	human	ensembl	69_37n	1	known	nonsense	c.84	p.W28*	0.999	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52E4	HGNC	ENSG00000180974	332	0	0	205	138	40.23	-	-	-	A	5905606	G	A	5905606	4	1	652	1	0	0	0	0	0	1	0	0	11189	1183	41	2	86	2	OR52E4	11	5905606	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		5905606	129100910	153	55826										
OR2D3	0	genome.wustl.edu	37	chr11	6942948	6942948	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcttattggaatattatctCcactgttatccagatgcagt	6	8	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	6942948	6942948	C	A	SNP	OR2D3	ENST00000317834	human	ensembl	69_37n	1	known	missense	c.716	p.S239Y	0.671	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2D3	HGNC	ENSG00000178358	381	0	0	262	157	37.38	-	-	-	A	6942948	C	A	6942948	3	1	652	1	0	0	0	0	1	0	0	0	11068	855	30	2	718	2	OR2D3	11	6942948	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1037342	6942948	128063568	154	55827										
ZNF143	0	genome.wustl.edu	37	chr11	9516249	9516249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aaatctcaacagagtggagaGaaggcatttcgatgtgaata	11	5	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	9516249	9516249	G	C	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	1	known	missense	c.702	p.E234D	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	315	0	0	318	134	29.65	-	-	-	C	9516249	G	C	9516249	3	2	652	1	0	0	0	0	1	0	0	0	17828	933	33	2	728	2	ZNF143	11	9516249	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2573301	9516249	125490267	155	55828										
MICAL2	0	genome.wustl.edu	37	chr11	12263947	12263947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctctttccggggtgctgtggCggctgcagcaagtggaggaa	17	9	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	12263947	12263947	C	T	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	missense	c.2524	p.R842W	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	71	0	0	39	28	41.79	-	-	-	T	12263947	C	T	12263947	3	4	652	1	0	0	0	0	1	0	0	0	9641	759	27	1	2590	1	MICAL2	11	12263947	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2747698	12263947	122742569	156	55829										
OR4C16	0	genome.wustl.edu	37	chr11	55340352	55340352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgtggtcatcttgttctttgGaccttgcatatttatgtaca	8	7	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	55340352	55340352	G	T	SNP	OR4C16	ENST00000314634	human	ensembl	69_37n	1	known	missense	c.749	p.G250V	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	332	0	0	299	60	16.71	-	-	-	T	55340352	G	T	55340352	3	4	652	1	0	0	0	0	1	0	0	0	11122	1174	41	2	751	2	OR4C16	11	55340352	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	43076405	55340352	79666164	157	55830										
OR5M8	0	genome.wustl.edu	37	chr11	56258639	56258639	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cacattggaagagaagcacaGatccacgaaggataagtggc	12	8	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	56258639	56258639	G	A	SNP	OR5M8	ENST00000327216	human	ensembl	69_37n	-1	known	silent	c.208	p.L70	0.378	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371	107	0	0	42	58	58	-	-	-	A	56258639	G	A	56258639	2	1	652	1	0	0	0	0	0	0	0	1	11249	933	33	2		2	OR5M8	11	56258639	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	918287	56258639	78747877	158	55831										
CTNND1	0	genome.wustl.edu	37	chr11	57563948	57563948	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggtcaagaaagtagtgaagaCtgtgacaacacggacagtac	12	7	1	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	57563948	57563948	C	G	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	missense	c.440	p.T147S	0.999	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	85	0	0	78	18	18.75	-	-	-	G	57563948	C	G	57563948	3	3	652	1	0	0	0	0	1	0	0	0	4051	565	20	4	454	4	CTNND1	11	57563948	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1305309	57563948	77442568	159	55832										
SCGB1D2	0	genome.wustl.edu	37	chr11	62009821	62009821	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctgctggtcacgctggccctCtgctgctaccagggtgagta	13	13	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	62009821	62009821	C	T	SNP	SCGB1D2	ENST00000244926	human	ensembl	69_37n	1	known	silent	c.42	p.L14	0.994	pfam_Uteroglobin-like_superfam	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB1D2	HGNC	ENSG00000124935	241	0	0	105	195	65	-	-	-	T	62009821	C	T	62009821	2	4	652	1	0	0	0	0	0	0	0	1	13984	900	32	2		2	SCGB1D2	11	62009821	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4445873	62009821	72996695	160	55833										
MEN1	0	genome.wustl.edu	37	chr11	64577195	64577195	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccttgaagtaggagcggctGaggctgttccatatgacatc	12	9	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	64577195	64577195	G	C	SNP	MEN1	ENST00000337652	human	ensembl	69_37n	-1	known	silent	c.387	p.L129	0.994	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	167	1	0.6	60	122	67.03	-	-	-	C	64577195	G	C	64577195	2	2	652	1	0	0	0	0	0	0	0	1	9543	1277	45	2		2	MEN1	11	64577195	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2567374	64577195	70429321	161	55834										
PAK1	0	genome.wustl.edu	37	chr11	77036380	77036380	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atctgctacttaccagctatCatggaaaagttactaaacac	5	10	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	77036380	77036380	C	G	SNP	PAK1	ENST00000278568	human	ensembl	69_37n	-1	known	missense	c.1593	p.M531I	0.017	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK1	HGNC	ENSG00000149269	172	0	0	75	117	60.94	-	-	-	G	77036380	C	G	77036380	3	3	652	1	0	0	0	0	1	0	0	0	11472	826	29	2	101	2	PAK1	11	77036380	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	12459185	77036380	57970136	162	55835										
ODZ4	0	genome.wustl.edu	37	chr11	78380233	78380233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggtatccatgtagatctccCcataggctgtgtacaggatt	10	9	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	78380233	78380233	C	A	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.7157	p.G2386V	1.000	tigrfam_Rhs_assc_core	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	228	0	0	89	115	56.37	-	-	-	A	78380233	C	A	78380233	3	1	652	1	0	0	0	0	1	0	0	0	10910	623	22	4	1164	4	ODZ4	11	78380233	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1343853	78380233	56626283	163	55836										
GPR83	0	genome.wustl.edu	37	chr11	94134208	94134208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caatgagcagggctttcaccGtggggttctgggactcagcg	15	10	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	94134208	94134208	G	A	SNP	GPR83	ENST00000243673	human	ensembl	69_37n	-1	known	missense	c.206	p.T69M	0.826	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	192	1	0.52	207	29	12.18	-	-	-	A	94134208	G	A	94134208	3	1	652	1	0	0	0	0	1	0	0	0	6763	1145	40	1	1081	1	GPR83	11	94134208	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	15753975	94134208	40872308	164	55837										
EXPH5	0	genome.wustl.edu	37	chr11	108384923	108384923	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttctcaaaagtgtcgggactCattgcattctccatgggagc	10	10	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	108384923	108384923	C	G	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.1311	p.M437I	0.381	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	242	0	0	90	143	61.11	-	-	-	G	108384923	C	G	108384923	3	3	652	1	0	0	0	0	1	0	0	0	5359	826	29	2	4662	2	EXPH5	11	108384923	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	14250715	108384923	26621593	165	55838										
BCO2	0	genome.wustl.edu	37	chr11	112086971	112086971	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agaagatggcttttatccctCagaacctgtttttgttccag	8	9	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	112086971	112086971	C	G	SNP	BCO2	ENST00000357685	human	ensembl	69_37n	1	known	nonsense	c.1544	p.S515*	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580	488	0	0	357	134	27.24	-	-	-	G	112086971	C	G	112086971	4	3	652	1	0	0	0	0	0	1	0	0	1389	838	29	2	1586	2	BCO2	11	112086971	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3702048	112086971	22919545	166	55839										
H2AFX	0	genome.wustl.edu	37	chr11	118965982	118965982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcgccggcgccaacgcgctcGgcgtagtggcccttccgcag	15	17	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	118965982	118965982	G	A	SNP	H2AFX	ENST00000375167	human	ensembl	69_37n	-1	known	silent	c.123	p.A41	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFX	HGNC	ENSG00000188486	69	0	0	15	30	66.67	-	-	-	A	118965982	G	A	118965982	2	1	652	1	0	0	0	0	0	0	0	1	6979	1103	39	1		1	H2AFX	11	118965982	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	6879011	118965982	16040534	167	55840										
BSX	0	genome.wustl.edu	37	chr11	122850093	122850093	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagagaaaaccgtgcgggctTtgcggcggcggcagtgcttc	16	11	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	122850093	122850093	T	A	SNP	BSX	ENST00000343035	human	ensembl	69_37n	-1	known	missense	c.335	p.K112I	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	BSX	HGNC	ENSG00000188909	48	0	0	43	21	32.81	-	-	-	A	122850093	T	A	122850093	3	1	652	1	0	0	0	0	1	0	0	0	1543	1841	64	5	373	5	BSX	11	122850093	Missense_Mutation	SNP	T	TCGA-C8-A1HM-01A-12D-A135-09	3884111	122850093	12156423	168	55841										
ETS1	0	genome.wustl.edu	37	chr11	128350168	128350168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcccgcacatagtccttgaaGgtgcccttgggcttgtggtt	12	11	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	11	128350168	128350168	G	A	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	silent	c.1041	p.T347	1.000	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	203	0	0	148	70	32.11	-	-	-	A	128350168	G	A	128350168	2	1	652	1	0	0	0	0	0	0	0	1	5312	987	35	4		4	ETS1	11	128350168	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	5500075	128350168	6656348	169	55842										
NDUFA9	0	genome.wustl.edu	37	chr12	4796219	4796219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcggcgtcatcgcacttaccGctggctgtctgctgaaattg	12	12	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	4796219	4796219	G	A	SNP	NDUFA9	ENST00000266544	human	ensembl	69_37n	1	known	missense	c.1079	p.R360H	1.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_NmrA	-	no_errors	NDUFA9	HGNC	ENSG00000139180	162	1	0.61	197	56	21.96	-	-	-	A	4796219	G	A	4796219	3	1	652	1	0	0	0	0	1	0	0	0	10344	1087	38	1	1121	1	NDUFA9	12	4796219	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		4796219	129055676	170	55843										
CHD4	0	genome.wustl.edu	37	chr12	6680157	6680157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agctgggagtcgagtcacatCagctttcatgtcactcagca	10	11	5	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	6680157	6680157	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.5683	p.D1895N	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	325	0	0	397	94	19.14	-	-	-	T	6680157	C	T	6680157	3	4	652	1	0	0	0	0	1	0	0	0	3356	826	29	2	147	2	CHD4	12	6680157	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1883938	6680157	127171738	171	55844										
PTPN6	0	genome.wustl.edu	37	chr12	7064127	7064127	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctggcccaggctccccgctCagggtcacccacatcaaggt	11	17	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	7064127	7064127	C	T	SNP	PTPN6	ENST00000541698	human	ensembl	69_37n	1	putative	missense	c.386	p.S129L	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_stop_codon:bad_bp_length_for_coding_region	PTPN6	HGNC	ENSG00000111679	75	0	0	54	37	40.66	-	-	-	T	7064127	C	T	7064127	3	4	652	1	0	0	0	0	1	0	0	0	12875	813	29	2	518	2	PTPN6	12	7064127	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	383970	7064127	126787768	172	55845										
CD163L1	0	genome.wustl.edu	37	chr12	7550886	7550886	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggttacaatcacatcctctCtgtgtacacaattatgcttt	5	10	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	7550886	7550886	C	G	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.1703	p.R568T	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	318	0	0	471	59	11.13	-	-	-	G	7550886	C	G	7550886	3	3	652	1	0	0	0	0	1	0	0	0	2997	913	32	2	2710	2	CD163L1	12	7550886	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	486759	7550886	126301009	173	55846										
SLCO1B1	0	genome.wustl.edu	37	chr12	21353576	21353576	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acgtagagcaacagtatggtCagccttcatctaaggctaac	9	10	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	21353576	21353576	C	T	SNP	SLCO1B1	ENST00000256958	human	ensembl	69_37n	1	known	nonsense	c.1105	p.Q369*	0.019	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	355	0	0	376	151	28.6	-	-	-	T	21353576	C	T	21353576	4	4	652	1	0	0	0	0	0	1	0	0	14812	827	29	2	1135	2	SLCO1B1	12	21353576	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	13802690	21353576	112498319	174	55847										
MLL2	0	genome.wustl.edu	37	chr12	49426957	49426957	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgtgtcccataaggccctgaCcctgctgtgccagctggggg	14	13	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	49426957	49426957	C	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.11531	p.G3844V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	73	0	0	70	10	12.5	-	-	-	A	49426957	C	A	49426957	3	1	652	1	0	0	0	0	1	0	0	0	9692	507	18	4	5146	4	MLL2	12	49426957	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	28073381	49426957	84424938	175	55848										
SMARCC2	0	genome.wustl.edu	37	chr12	56561849	56561849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctcctgctactcactgcttCtcgctcccggtccatgatag	8	16	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	56561849	56561849	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.2752	p.E918K	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	243	0	0	278	41	12.85	-	-	-	T	56561849	C	T	56561849	3	4	652	1	0	0	0	0	1	0	0	0	14865	922	32	2	908	2	SMARCC2	12	56561849	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	7134892	56561849	77290046	176	55849										
LRP1	0	genome.wustl.edu	37	chr12	57592378	57592378	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgacgctggactatgtcactGagcgcatctactgggccgac	12	12	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	57592378	57592378	G	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	nonsense	c.9601	p.E3201*	1.000	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	84	0	0	84	14	14.29	-	-	-	T	57592378	G	T	57592378	4	4	652	1	0	0	0	0	0	1	0	0	9017	1291	45	2	9839	2	LRP1	12	57592378	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1030529	57592378	76259517	177	55850										
GRIP1	0	genome.wustl.edu	37	chr12	66742819	66742819	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctataatgtattagtgggttCtcgtgtctccaaattaccac	7	9	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	66742819	66742819	C	T	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	missense	c.3367	p.E1123K	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	509	1	0.2	380	143	27.34	-	-	-	T	66742819	C	T	66742819	3	4	652	1	0	0	0	0	1	0	0	0	6838	922	32	2	23	2	GRIP1	12	66742819	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	9150441	66742819	67109076	178	55851										
NUP107	0	genome.wustl.edu	37	chr12	69103830	69103830	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttgccaaagatgaaattggaGaattttctgataatattgag	9	3	1	5			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	69103830	69103830	G	A	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.847	p.E283K	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	316	0	0	260	30	10.31	-	-	-	A	69103830	G	A	69103830	3	1	652	1	0	0	0	0	1	0	0	0	10826	943	33	2	885	2	NUP107	12	69103830	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2361011	69103830	64748065	179	55852										
HCFC2	0	genome.wustl.edu	37	chr12	104461863	104461863	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcctggcaaacgaaagcgaaGattcaaacaataatgttccc	8	10	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	104461863	104461863	G	C	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.451	p.D151H	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	348	0	0	319	44	12.12	-	-	-	C	104461863	G	C	104461863	3	2	652	1	0	0	0	0	1	0	0	0	7044	942	33	2	461	2	HCFC2	12	104461863	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	35358033	104461863	29390032	180	55853										
ANAPC7	0	genome.wustl.edu	37	chr12	110815414	110815414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gttggaggctaagtaacattCgataagacctgaaaaaagta	10	5	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	110815414	110815414	C	T	SNP	ANAPC7	ENST00000455511	human	ensembl	69_37n	-1	known	missense	c.1243	p.E415K	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510	317	0	0	262	42	13.73	-	-	-	T	110815414	C	T	110815414	3	4	652	1	0	0	0	0	1	0	0	0	606	893	31	1	572	1	ANAPC7	12	110815414	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6353551	110815414	23036481	181	55854										
GCN1L1	0	genome.wustl.edu	37	chr12	120575105	120575105	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctcttcaatgagtgccaactGgttgccagcatccagcttct	8	13	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	120575105	120575105	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	nonsense	c.6682	p.Q2228*	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	254	0	0	162	64	28.32	-	-	-	A	120575105	G	A	120575105	4	1	652	1	0	0	0	0	0	1	0	0	6349	1357	47	4	1369	4	GCN1L1	12	120575105	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	9759691	120575105	13276790	182	55855										
OASL	0	genome.wustl.edu	37	chr12	121469412	121469412	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gggtggctgggagttgggaaGagaaggccctgaggagtgaa	21	4	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	121469412	121469412	G	T	SNP	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	missense	c.490	p.L164I	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	88	0	0	79	17	17.71	-	-	-	T	121469412	G	T	121469412	3	4	652	1	0	0	0	0	1	0	0	0	10875	942	33	2	1070	2	OASL	12	121469412	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	894307	121469412	12382483	183	55856										
TMEM120B	0	genome.wustl.edu	37	chr12	122186349	122186349	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tacctgcccaagaagaacggGtaggagctggcaacctcccc	11	14	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	122186349	122186349	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	splice_site	c.305+1	e3+1	1.000	-	-	-	no_errors	TMEM120B	HGNC	ENSG00000188735	57	0	0	41	12	22.64	-	-	-	A	122186349	G	A	122186349	5	1	652	1	0	0	0	0	0	0	1	0	16129	1275	44	4	316	4	TMEM120B	12	122186349	Splice_Site	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	716937	122186349	11665546	184	55857										
VPS33A	0	genome.wustl.edu	37	chr12	122723195	122723195	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgagcccactattacacacgGattggaggcaaactagtctt	9	10	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	122723195	122723195	G	C	SNP	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	missense	c.1241	p.S414C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	213	0	0	173	26	13.07	-	-	-	C	122723195	G	C	122723195	3	2	652	1	0	0	0	0	1	0	0	0	17298	1174	41	2	565	2	VPS33A	12	122723195	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	536846	122723195	11128700	185	55858										
KNTC1	0	genome.wustl.edu	37	chr12	123089155	123089155	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aattctgcctttatttagctGagagatggctacagaatatc	8	7	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	123089155	123089155	G	T	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	nonsense	c.5146	p.E1716*	1.000	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	276	0	0	213	37	14.8	-	-	-	T	123089155	G	T	123089155	4	4	652	1	0	0	0	0	0	1	0	0	8481	1291	45	2	5336	2	KNTC1	12	123089155	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	365960	123089155	10762740	186	55859										
SNRNP35	0	genome.wustl.edu	37	chr12	123950359	123950359	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggacttggtcacaggtttttCaaagggctacgccttcatcg	11	10	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	123950359	123950359	C	G	SNP	SNRNP35	ENST00000412157	human	ensembl	69_37n	1	known	nonsense	c.287	p.S96*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRNP35	HGNC	ENSG00000184209	123	0	0	134	23	14.65	-	-	-	G	123950359	C	G	123950359	4	3	652	1	0	0	0	0	0	1	0	0	14944	838	29	2	293	2	SNRNP35	12	123950359	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	861204	123950359	9901536	187	55860										
SNRNP35	0	genome.wustl.edu	37	chr12	123950612	123950612	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccagttgttaaaaacgacctCtatagagagggaaaacggga	11	7	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	12	123950612	123950612	C	G	SNP	SNRNP35	ENST00000412157	human	ensembl	69_37n	1	known	silent	c.540	p.L180	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRNP35	HGNC	ENSG00000184209	93	0	0	93	16	14.68	-	-	-	G	123950612	C	G	123950612	2	3	652	1	0	0	0	0	0	0	0	1	14944	900	32	2		2	SNRNP35	12	123950612	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	253	123950612	9901283	188	55861										
ATP8A2	0	genome.wustl.edu	37	chr13	26535727	26535727	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttgcaggcaactatggtcctGagctccgcacacttctggtt	10	12	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	13	26535727	26535727	G	C	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	silent	c.3198	p.L1066	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC	ENSG00000132932	539	0	0	437	95	17.86	-	-	-	C	26535727	G	C	26535727	2	2	652	1	0	0	0	0	0	0	0	1	1197	1277	45	2		2	ATP8A2	13	26535727	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		26535727	88634151	189	55862										
AKAP11	0	genome.wustl.edu	37	chr13	42882612	42882612	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caaaagaaatagaagactttCagtcaaccgagtctgtcagt	8	8	4	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	13	42882612	42882612	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	1	known	nonsense	c.5140	p.Q1714*	0.997	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	115	0	0	102	18	15	-	-	-	T	42882612	C	T	42882612	4	4	652	1	0	0	0	0	0	1	0	0	447	827	29	2	5166	2	AKAP11	13	42882612	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	16346885	42882612	72287266	190	55863										
FARP1	0	genome.wustl.edu	37	chr13	98865603	98865603	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaagccgcccccaacaccttCaggaaaactcgtgtccatca	7	16	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	13	98865603	98865603	C	G	SNP	FARP1	ENST00000376586	human	ensembl	69_37n	1	known	nonsense	c.107	p.S36*	1.000	smart_Band_41_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP1	HGNC	ENSG00000152767	167	0	0	127	25	16.45	-	-	-	G	98865603	C	G	98865603	4	3	652	1	0	0	0	0	0	1	0	0	5722	838	29	2	109	2	FARP1	13	98865603	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	55982991	98865603	16304275	191	55864										
MCF2L	0	genome.wustl.edu	37	chr13	113719306	113719306	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctcagatgctgcagtccttCgggaccgagctggctgaaac	13	12	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	13	113719306	113719306	C	T	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	silent	c.834	p.F278	0.990	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	105	0	0	47	46	48.94	-	-	-	T	113719306	C	T	113719306	2	4	652	1	0	0	0	0	0	0	0	1	9450	883	31	1		1	MCF2L	13	113719306	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	14853703	113719306	1450572	192	55865										
F7	0	genome.wustl.edu	37	chr13	113772894	113772894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggtgcccctctgcctgcccGaacggacgttctctgagagg	13	14	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	13	113772894	113772894	G	A	SNP	F7	ENST00000375581	human	ensembl	69_37n	1	known	missense	c.973	p.E325K	0.019	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F7	HGNC	ENSG00000057593	27	0	0	17	12	41.38	-	-	-	A	113772894	G	A	113772894	3	1	652	1	0	0	0	0	1	0	0	0	5386	1059	37	1	1007	1	F7	13	113772894	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	53588	113772894	1396984	193	55866										
OR4K1	0	genome.wustl.edu	37	chr14	20404299	20404299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggcgttcttcattctgtgagCcacttggcttttacagtgga	11	9	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	20404299	20404299	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	69_37n	1	known	silent	c.474	p.S158	0.006	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	393	0	0	386	148	27.56	-	-	-	T	20404299	C	T	20404299	2	4	652	1	0	0	0	0	0	0	0	1	11140	738	26	4		4	OR4K1	14	20404299	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		20404299	86945241	194	55867										
TEP1	0	genome.wustl.edu	37	chr14	20856087	20856087	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgctgggaaacaggagccaaGgggcttggagtgtcctcttc	15	9	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	20856087	20856087	G	C	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	silent	c.2661	p.P887	0.580	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	283	0	0	137	136	49.45	-	-	-	C	20856087	G	C	20856087	2	2	652	1	0	0	0	0	0	0	0	1	15854	987	35	4		4	TEP1	14	20856087	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	451788	20856087	86493453	195	55868										
CHD8	0	genome.wustl.edu	37	chr14	21867782	21867782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atgtttaaagactccaatgaGcagcgacttgtcagcctcac	8	11	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	21867782	21867782	G	C	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.4900	p.L1634V	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	198	0	0	205	80	28.07	-	-	-	C	21867782	G	C	21867782	3	2	652	1	0	0	0	0	1	0	0	0	3360	971	34	4	2897	4	CHD8	14	21867782	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1011695	21867782	85481758	196	55869										
SNX6	0	genome.wustl.edu	37	chr14	35077312	35077312	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctcatgttgccgaacaactGaaaactcgttttgtttaaaa	6	9	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	35077312	35077312	G	A	SNP	SNX6	ENST00000556712	human	ensembl	69_37n	-1	known	nonsense	c.211	p.Q71*	1.000	pfam_Phox,superfamily_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,pfscan_Phox	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SNX6	HGNC	ENSG00000129515	278	0	0	125	66	34.55	-	-	-	A	35077312	G	A	35077312	4	1	652	1	0	0	0	0	0	1	0	0	14995	1294	45	2	1070	2	SNX6	14	35077312	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	13209530	35077312	72272228	197	55870										
COQ6	0	genome.wustl.edu	37	chr14	74428017	74428017	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggatgccaaaagccgagttCtgtttcctcttgggttggga	13	8	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	74428017	74428017	C	A	SNP	COQ6	ENST00000334571	human	ensembl	69_37n	1	known	missense	c.1033	p.L345M	0.346	tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723	221	1	0.45	145	39	21.2	-	-	-	A	74428017	C	A	74428017	3	1	652	1	0	0	0	0	1	0	0	0	3779	912	32	2	1067	2	COQ6	14	74428017	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	39350705	74428017	32921523	198	55871										
PPP4R4	0	genome.wustl.edu	37	chr14	94744955	94744955	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcatttctttcttcccaaaGaaaatccagaaaatccaatc	2	11	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	94744955	94744955	G	C	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	splice_site	c.2598-1	e25-1	1.000	-	-	-	no_errors	PPP4R4	HGNC	ENSG00000119698	197	0	0	80	123	60.59	-	-	-	C	94744955	G	C	94744955	5	2	652	1	0	0	0	0	0	0	1	0	12482	956	33	2	2768	2	PPP4R4	14	94744955	Splice_Site	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	20316938	94744955	12604585	199	55872										
HSP90AA1	0	genome.wustl.edu	37	chr14	102549629	102549629	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctgagttagctacctggtcCttggtctcacctgaggtatt	11	10	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	14	102549629	102549629	C	G	SNP	HSP90AA1	ENST00000334701	human	ensembl	69_37n	-1	known	missense	c.1863	p.K621N	1.000	pirsf_Hsp90,pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824	295	0	0	90	132	59.46	-	-	-	G	102549629	C	G	102549629	3	3	652	1	0	0	0	0	1	0	0	0	7454	680	24	4	713	4	HSP90AA1	14	102549629	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	7804674	102549629	4799911	200	55873										
TJP1	0	genome.wustl.edu	37	chr15	30053811	30053811	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaatcacactcaccgtctctCtcagaggcattagcagagtg	9	12	4	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	30053811	30053811	C	G	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	missense	c.855	p.E285D	1.000	NULL	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	275	0	0	123	62	33.33	-	-	-	G	30053811	C	G	30053811	3	3	652	1	0	0	0	0	1	0	0	0	16024	912	32	2	4479	2	TJP1	15	30053811	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		30053811	72477581	201	55874										
SPRED1	0	genome.wustl.edu	37	chr15	38614513	38614513	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccaacatttcaccactggaaGattgatgacaagaagtttgg	9	8	1	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	38614513	38614513	G	C	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.279	p.K93N	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	261	0	0	137	132	48.89	-	-	-	C	38614513	G	C	38614513	3	2	652	1	0	0	0	0	1	0	0	0	15183	933	33	2	289	2	SPRED1	15	38614513	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	8560702	38614513	63916879	202	55875										
GALK2	0	genome.wustl.edu	37	chr15	49509389	49509389	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gctttctcttttttctaggaGagcatatagattattgtgga	9	5	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	49509389	49509389	G	A	SNP	GALK2	ENST00000560031	human	ensembl	69_37n	1	known	missense	c.145	p.E49K	1.000	pfam_GalKase_gal-bd,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	-	no_errors	GALK2	HGNC	ENSG00000156958	260	0	0	215	64	22.94	-	-	-	A	49509389	G	A	49509389	3	1	652	1	0	0	0	0	1	0	0	0	6254	943	33	2	179	2	GALK2	15	49509389	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	10894876	49509389	53022003	203	55876										
UNC13C	0	genome.wustl.edu	37	chr15	54919234	54919234	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctatccttagaatactctctCagaggaccagtgatgatgtg	9	9	2	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	54919234	54919234	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	nonsense	c.6568	p.Q2190*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	319	0	0	283	57	16.76	-	-	-	T	54919234	C	T	54919234	4	4	652	1	0	0	0	0	0	1	0	0	17083	827	29	2	6690	2	UNC13C	15	54919234	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5409845	54919234	47612158	204	55877										
MYO1E	0	genome.wustl.edu	37	chr15	59515261	59515261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atgccagggctacgcacactCttcactctccacagccgcgt	8	17	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	59515261	59515261	C	G	SNP	MYO1E	ENST00000288235	human	ensembl	69_37n	-1	known	missense	c.907	p.E303Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483	148	0	0	163	22	11.89	-	-	-	G	59515261	C	G	59515261	3	3	652	1	0	0	0	0	1	0	0	0	10144	922	32	2	2499	2	MYO1E	15	59515261	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4596027	59515261	43016131	205	55878										
VPS13C	0	genome.wustl.edu	37	chr15	62170937	62170937	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccggaacccaaagacaaactCaaatgcaactaaaagaaaaa	5	10	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	62170937	62170937	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.10011	p.L3337F	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	150	0	0	112	16	12.5	-	-	-	G	62170937	C	G	62170937	3	3	652	1	0	0	0	0	1	0	0	0	17288	825	29	2	1326	2	VPS13C	15	62170937	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2655676	62170937	40360455	206	55879										
VPS13C	0	genome.wustl.edu	37	chr15	62204183	62204183	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cgtgaaaggttgaaactgctCattttgatgctaacaccaac	8	9	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	62204183	62204183	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.8571	p.M2857I	1.000	pfam_VPSAP	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	225	0	0	239	99	29.2	-	-	-	T	62204183	C	T	62204183	3	4	652	1	0	0	0	0	1	0	0	0	17288	826	29	2	2810	2	VPS13C	15	62204183	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	33246	62204183	40327209	207	55880										
NEIL1	0	genome.wustl.edu	37	chr15	75641571	75641571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acacggccccgcctggccccCggctcgccctatgtttcgtg	11	19	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	75641571	75641571	C	T	SNP	NEIL1	ENST00000355059	human	ensembl	69_37n	1	known	missense	c.325	p.R109W	0.401	pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398	20	0	0	11	17	60.71	-	-	-	T	75641571	C	T	75641571	3	4	652	1	0	0	0	0	1	0	0	0	10390	643	23	1	327	1	NEIL1	15	75641571	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	13437388	75641571	26889821	208	55881										
HOMER2	0	genome.wustl.edu	37	chr15	83518649	83518649	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caggttttgattgtctctctCtgccgcctggccaagcaaaa	9	12	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	83518649	83518649	C	T	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	missense	c.883	p.E295K	1.000	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	150	0	0	117	30	20.27	-	-	-	T	83518649	C	T	83518649	3	4	652	1	0	0	0	0	1	0	0	0	7330	922	32	2	185	2	HOMER2	15	83518649	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	7877078	83518649	19012743	209	55882										
SLC28A1	0	genome.wustl.edu	37	chr15	85431031	85431031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gacgaagagagtccatctctCtcacacctgtggccaagggt	11	12	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	85431031	85431031	C	G	SNP	SLC28A1	ENST00000286749	human	ensembl	69_37n	1	known	missense	c.40	p.L14V	0.020	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222	206	0	0	264	37	12.29	-	-	-	G	85431031	C	G	85431031	3	3	652	1	0	0	0	0	1	0	0	0	14620	913	32	2	42	2	SLC28A1	15	85431031	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1912382	85431031	17100361	210	55883										
HAPLN3	0	genome.wustl.edu	37	chr15	89424920	89424920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggtgaacagggtctcctcgGgtgtctccaccaccagcttc	11	14	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	15	89424920	89424920	G	A	SNP	HAPLN3	ENST00000359595	human	ensembl	69_37n	-1	known	missense	c.161	p.P54L	0.951	pfam_Ig_V-set,pfscan_Ig-like	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like	-	no_errors	HAPLN3	HGNC	ENSG00000140511	45	0	0	36	16	30.77	-	-	-	A	89424920	G	A	89424920	3	1	652	1	0	0	0	0	1	0	0	0	7007	1232	43	4	933	4	HAPLN3	15	89424920	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	3993889	89424920	13106472	211	55884										
NARFL	0	genome.wustl.edu	37	chr16	787197	787197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	actgcttaccttgttagcatCtagaaccttcttcagctcct	5	13	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	787197	787197	C	G	SNP	NARFL	ENST00000251588	human	ensembl	69_37n	-1	known	missense	c.295	p.D99H	0.000	superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245	154	0	0	121	55	31.25	-	-	-	G	787197	C	G	787197	3	3	652	1	0	0	0	0	1	0	0	0	10240	913	32	2	1171	2	NARFL	16	787197	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		787197	89567556	212	55885										
CHTF18	0	genome.wustl.edu	37	chr16	839677	839677	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cggagggcgtccgggcttatCtggtgctgcgtgctgacccc	16	13	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	839677	839677	C	T	SNP	CHTF18	ENST00000426047	human	ensembl	69_37n	1	novel	missense	c.179	p.S60F	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHTF18	HGNC	ENSG00000127586	59	0	0	68	21	23.6	-	-	-	T	839677	C	T	839677	3	4	652	1	0	0	0	0	1	0	0	0	3443	912	32	2	582	2	CHTF18	16	839677	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	52480	839677	89515076	213	55886										
RPS2	0	genome.wustl.edu	37	chr16	2014292	2014292	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cgtaccttaataggcagggaGaagagatagatctcctccag	11	9	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	2014292	2014292	G	T	SNP	RPS2	ENST00000343262	human	ensembl	69_37n	-1	known	missense	c.252	p.F84L	1.000	tigrfam_Ribosomal_S5_euk/arc	pfam_Ribosomal_S5_N,pfam_Ribosomal_S5_C,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N,tigrfam_Ribosomal_S5_euk/arc	-	no_errors	RPS2	HGNC	ENSG00000140988	100	0	0	76	33	30.28	-	-	-	T	2014292	G	T	2014292	3	4	652	1	0	0	0	0	1	0	0	0	13717	933	33	2	649	2	RPS2	16	2014292	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1174615	2014292	88340461	214	55887										
CCDC64B	0	genome.wustl.edu	37	chr16	3081079	3081079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cacgtccccctccagctccaCggcccgggcctcccactcgg	9	23	0	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	3081079	3081079	C	T	SNP	CCDC64B	ENST00000389347	human	ensembl	69_37n	-1	known	missense	c.355	p.V119M	0.990	NULL	superfamily_Sig_transdc_His_kinase_dimeric	-	no_errors	CCDC64B	HGNC	ENSG00000162069	13	0	0	12	11	47.83	-	-	-	T	3081079	C	T	3081079	3	4	652	1	0	0	0	0	1	0	0	0	2863	536	19	1	1203	1	CCDC64B	16	3081079	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1066787	3081079	87273674	215	55888										
MKL2	0	genome.wustl.edu	37	chr16	14334208	14334208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttccaccagatcagaagggtGagaagaatgagccgcagatg	13	8	1	6			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	14334208	14334208	G	A	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.913	p.E305K	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	174	0	0	150	74	33.04	-	-	-	A	14334208	G	A	14334208	3	1	652	1	0	0	0	0	1	0	0	0	9673	1291	45	2	976	2	MKL2	16	14334208	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	11253129	14334208	76020545	216	55889										
SYT17	0	genome.wustl.edu	37	chr16	19191817	19191817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggatggaagacgctcgtcctCagacacatccaagtctacat	9	12	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	19191817	19191817	C	T	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	missense	c.287	p.S96L	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	80	0	0	72	43	37.39	-	-	-	T	19191817	C	T	19191817	3	4	652	1	0	0	0	0	1	0	0	0	15565	838	29	2	301	2	SYT17	16	19191817	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4857609	19191817	71162936	217	55890										
ACSM1	0	genome.wustl.edu	37	chr16	20636769	20636769	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctcgaatcgggtctgggctGcccaccacggctgactccgc	12	17	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	20636769	20636769	G	C	SNP	ACSM1	ENST00000524149	human	ensembl	69_37n	-1	novel	missense	c.518	p.A173G	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACSM1	HGNC	ENSG00000166743	81	0	0	125	16	11.35	-	-	-	C	20636769	G	C	20636769	3	2	652	1	0	0	0	0	1	0	0	0	182	1306	46	4	242	4	ACSM1	16	20636769	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1444952	20636769	69717984	218	55891										
NLRC5	0	genome.wustl.edu	37	chr16	57075485	57075485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	acctcggtcacctccacctcGagtgagtggtttgtgtgttg	12	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	57075485	57075485	G	A	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.3028	p.D1010N	0.971	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	133	0	0	68	50	42.37	-	-	-	A	57075485	G	A	57075485	3	1	652	1	0	0	0	0	1	0	0	0	10542	1072	37	1	3090	1	NLRC5	16	57075485	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	36438716	57075485	33279268	219	55892										
FAM65A	0	genome.wustl.edu	37	chr16	67577132	67577132	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcctgagctgcagggcctgGagcaggaggtgacccgccta	15	12	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	67577132	67577132	G	C	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.2503	p.E835Q	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	39	0	0	23	7	23.33	-	-	-	C	67577132	G	C	67577132	3	2	652	1	0	0	0	0	1	0	0	0	5644	1175	41	2	2489	2	FAM65A	16	67577132	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	10501647	67577132	22777621	220	55893										
FAM65A	0	genome.wustl.edu	37	chr16	67578233	67578233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcccggaggctggggctgagGacagcatagactcacccagt	15	12	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	67578233	67578233	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.2692	p.D898N	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	30	0	0	21	6	22.22	-	-	-	A	67578233	G	A	67578233	3	1	652	1	0	0	0	0	1	0	0	0	5644	1174	41	2	2686	2	FAM65A	16	67578233	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1101	67578233	22776520	221	55894										
CIRH1A	0	genome.wustl.edu	37	chr16	69191112	69191112	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagctgtcaggaggaagcttCaagcacctgcatgctttcca	10	12	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	69191112	69191112	C	G	SNP	CIRH1A	ENST00000314423	human	ensembl	69_37n	1	known	missense	c.1413	p.F471L	0.999	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	191	0	0	164	39	19.12	-	-	-	G	69191112	C	G	69191112	3	3	652	1	0	0	0	0	1	0	0	0	3463	825	29	2	1455	2	CIRH1A	16	69191112	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	1612879	69191112	21163641	222	55895										
PMFBP1	0	genome.wustl.edu	37	chr16	72188209	72188209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cggagagaatagtaagaagtCtgcaactcctctgtgtgaaa	11	7	2	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	72188209	72188209	C	G	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.315	p.Q105H	0.984	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	341	0	0	244	108	30.51	-	-	-	G	72188209	C	G	72188209	3	3	652	1	0	0	0	0	1	0	0	0	12208	912	32	2	2840	2	PMFBP1	16	72188209	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2997097	72188209	18166544	223	55896										
ADAMTS18	0	genome.wustl.edu	37	chr16	77375627	77375627	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caagccacaaacggtcccttCtgctgcgggcataaacttgg	10	13	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	16	77375627	77375627	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	missense	c.1684	p.E562K	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	261	0	0	236	101	29.97	-	-	-	T	77375627	C	T	77375627	3	4	652	1	0	0	0	0	1	0	0	0	263	922	32	2	2033	2	ADAMTS18	16	77375627	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5187418	77375627	12979126	224	55897										
PRPF8	0	genome.wustl.edu	37	chr17	1564924	1564924	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctgttctgagcaatggcctCttgcctcttgagtgcgtact	10	12	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	1564924	1564924	C	G	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.4183	p.E1395Q	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	121	0	0	94	23	19.49	-	-	-	G	1564924	C	G	1564924	3	3	652	1	0	0	0	0	1	0	0	0	12656	922	32	2	2896	2	PRPF8	17	1564924	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		1564924	79630286	225	55898										
SMG6	0	genome.wustl.edu	37	chr17	2203954	2203954	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gcctcctttaattccttcatGttttctgttatgtcggggaa	8	9	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	2203954	2203954	G	T	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.93	p.N31K	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	80	0	0	43	5	10.2	-	-	-	T	2203954	G	T	2203954	3	4	652	1	0	0	0	0	1	0	0	0	14886	1368	48	4	4238	4	SMG6	17	2203954	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	639030	2203954	78991256	226	55899										
NLRP1	0	genome.wustl.edu	37	chr17	5418221	5418221	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagctgaacagcttccgcatCtggctgggcctcgtgttctc	11	13	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	5418221	5418221	C	G	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.4275	p.Q1425H	0.907	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	211	0	0	121	29	19.33	-	-	-	G	5418221	C	G	5418221	3	3	652	1	0	0	0	0	1	0	0	0	10543	912	32	2	213	2	NLRP1	17	5418221	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3214267	5418221	75776989	227	55900										
FXR2	0	genome.wustl.edu	37	chr17	7495896	7495896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ggcggcggctgcgattacgaCgttgaggtcttgattcatct	14	9	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	7495896	7495896	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	missense	c.1751	p.R584H	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	133	0	0	51	67	56.78	-	-	-	T	7495896	C	T	7495896	3	4	652	1	0	0	0	0	1	0	0	0	6165	536	19	1	182	1	FXR2	17	7495896	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2077675	7495896	73699314	228	55901										
TP53	0	genome.wustl.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	7578268	7578268	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.581	p.L194P	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	273	0	0	101	143	58.61	-	-	-	G	7578268	A	G	7578268	3	3	652	1	0	0	0	0	1	0	0	0	16477	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-C8-A1HM-01A-12D-A135-09	82372	7578268	73616942	229	55902										
MYH2	0	genome.wustl.edu	37	chr17	10435109	10435109	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttctcagtttctgcactcttCaacagaggcttgatcttgaa	7	10	5	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	10435109	10435109	C	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.2538	p.L846	0.861	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	497	1	0.2	336	74	18.05	-	-	-	T	10435109	C	T	10435109	2	4	652	1	0	0	0	0	0	0	0	1	10107	825	29	2		2	MYH2	17	10435109	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2856841	10435109	70760101	230	55903										
DNAH9	0	genome.wustl.edu	37	chr17	11543625	11543625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agaacatgcccaccgtggctGgcggcctccgctgggcacag	14	15	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	11543625	11543625	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.1825	p.G609S	0.989	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	98	0	0	33	39	54.17	-	-	-	A	11543625	G	A	11543625	3	1	652	1	0	0	0	0	1	0	0	0	4643	1348	47	4	1863	4	DNAH9	17	11543625	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1108516	11543625	69651585	231	55904										
ELAC2	0	genome.wustl.edu	37	chr17	12897061	12897061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aagttggggctgaagaggggGaccttggcatagcgctggct	18	7	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	12897061	12897061	G	A	SNP	ELAC2	ENST00000584650	human	ensembl	69_37n	-1	novel	missense	c.1595	p.S532F	1.000	NULL	pfam_Beta-lactamas-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELAC2	HGNC	ENSG00000006744	205	0	0	99	103	50.99	-	-	-	A	12897061	G	A	12897061	3	1	652	1	0	0	0	0	1	0	0	0	5084	1161	41	2	292	2	ELAC2	17	12897061	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1353436	12897061	68298149	232	55905										
LRRC48	0	genome.wustl.edu	37	chr17	17910739	17910739	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tccaaaagttcaattatgtgGaggcttctggcactttctaa	8	8	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	17910739	17910739	G	C	SNP	LRRC48	ENST00000399182	human	ensembl	69_37n	1	known	missense	c.1354	p.E452Q	0.002	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	436	0	0	187	136	42.11	-	-	-	C	17910739	G	C	17910739	3	2	652	1	0	0	0	0	1	0	0	0	9071	1175	41	2	1396	2	LRRC48	17	17910739	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	5013678	17910739	63284471	233	55906										
SLC13A2	0	genome.wustl.edu	37	chr17	26824217	26824217	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagcctgcactctttcccctCctgggcacagtccaacacca	6	19	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	26824217	26824217	C	G	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	missense	c.1856	p.S619C	0.124	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	131	0	0	161	19	10.56	-	-	-	G	26824217	C	G	26824217	3	3	652	1	0	0	0	0	1	0	0	0	14481	855	30	2	1902	2	SLC13A2	17	26824217	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	8913478	26824217	54370993	234	55907										
CISD3	0	genome.wustl.edu	37	chr17	36887606	36887606	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctagaaccccagccaggtccGtggtggccctgaagaccccc	11	17	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	36887606	36887606	G	C	SNP	CISD3	ENST00000439660	human	ensembl	69_37n	1	known	missense	c.118	p.V40L	0.787	NULL	pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	-	no_errors	CISD3	HGNC	ENSG00000230055	188	0	0	72	110	60.44	-	-	-	C	36887606	G	C	36887606	3	2	652	1	0	0	0	0	1	0	0	0	3466	1145	40	3	128	3	CISD3	17	36887606	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	10063389	36887606	44307604	235	55908										
PLEKHM1	0	genome.wustl.edu	37	chr17	43545712	43545712	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ctgctggcctgaggtgctctCtacaggctgctgtaagtcca	12	12	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	43545712	43545712	C	G	SNP	PLEKHM1	ENST00000430334	human	ensembl	69_37n	-1	known	missense	c.1171	p.E391Q	0.001	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	169	0	0	160	19	10.61	-	-	-	G	43545712	C	G	43545712	3	3	652	1	0	0	0	0	1	0	0	0	12154	922	32	2	2031	2	PLEKHM1	17	43545712	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	6658106	43545712	37649498	236	55909										
TRIM37	0	genome.wustl.edu	37	chr17	57126636	57126636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caccttcgagaagcatgtcaGagcatgcagacttcttagct	9	11	2	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	57126636	57126636	G	C	SNP	TRIM37	ENST00000262294	human	ensembl	69_37n	-1	known	missense	c.1433	p.S478C	0.496	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395	421	0	0	851	130	13.25	-	-	-	C	57126636	G	C	57126636	3	2	652	1	0	0	0	0	1	0	0	0	16607	942	33	2	1509	2	TRIM37	17	57126636	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	13580924	57126636	24068574	237	55910										
SEC14L1	0	genome.wustl.edu	37	chr17	75196587	75196587	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttccaaaagatgagcatattCttcggttcctccgtgcacgg	9	11	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	75196587	75196587	C	G	SNP	SEC14L1	ENST00000392476	human	ensembl	69_37n	1	known	missense	c.841	p.L281V	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657	234	0	0	263	34	11.45	-	-	-	G	75196587	C	G	75196587	3	3	652	1	0	0	0	0	1	0	0	0	14069	913	32	2	867	2	SEC14L1	17	75196587	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	18069951	75196587	5998623	238	55911										
ARL16	0	genome.wustl.edu	37	chr17	79650736	79650736	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggatatcctgcagccgtttCaccagcagcgtcttcccgac	9	15	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	79650736	79650736	C	G	SNP	ARL16	ENST00000397498	human	ensembl	69_37n	-1	known	silent	c.120	p.V40	0.990	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	-	no_errors	ARL16	HGNC	ENSG00000214087	29	0	0	7	20	74.07	-	-	-	G	79650736	C	G	79650736	2	3	652	1	0	0	0	0	0	0	0	1	934	813	29	2		2	ARL16	17	79650736	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4454149	79650736	1544474	239	55912										
HGS	0	genome.wustl.edu	37	chr17	79661866	79661866	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	actcgtcggcgcctctggctGaggacatcgaccctgaggta	13	13	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	17	79661866	79661866	G	A	SNP	HGS	ENST00000329138	human	ensembl	69_37n	1	known	missense	c.958	p.E320K	1.000	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	217	0	0	233	57	19.66	-	-	-	A	79661866	G	A	79661866	3	1	652	1	0	0	0	0	1	0	0	0	7138	1291	45	2	1004	2	HGS	17	79661866	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	11130	79661866	1533344	240	55913										
NEDD4L	0	genome.wustl.edu	37	chr18	55833023	55833023	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgttctccttctcacagggaGagtcccgtattctcagagta	9	11	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	18	55833023	55833023	G	C	SNP	NEDD4L	ENST00000591989	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	NEDD4L	HGNC	ENSG00000049759	509	0	0	187	176	48.48	-	-	-	C	55833023	G	C	55833023	5	2	652	1	0	0	0	0	0	0	1	0	10383	943	33	2	86	2	NEDD4L	18	55833023	Splice_Site	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		55833023	22244225	241	55914										
UHRF1	0	genome.wustl.edu	37	chr19	4941544	4941544	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcctcgttccttgcagggatGattctctgaacgactgtcgg	11	11	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	4941544	4941544	G	T	SNP	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.971	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	154	0	0	77	42	35.29	-	-	-	T	4941544	G	T	4941544	1	4	652	0	1	0	0	0	0	0	0	0	17064	1290	45	2		2	UHRF1	19	4941544	RNA	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		4941544	54187439	242	55915										
CAPS	0	genome.wustl.edu	37	chr19	5914426	5914426	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cccagaccaagcatggacgcCgtggatgccaccatggagaa	12	13	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	5914426	5914426	C	T	SNP	CAPS	ENST00000222125	human	ensembl	69_37n	1	known	silent	c.9	p.A3	0.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS	HGNC	ENSG00000105519	41	0	0	29	15	34.09	-	-	-	T	5914426	C	T	5914426	2	4	652	1	0	0	0	0	0	0	0	1	2662	639	23	1		1	CAPS	19	5914426	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	972882	5914426	53214557	243	55916										
MUC16	0	genome.wustl.edu	37	chr19	9059268	9059268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttgtagctgagtgagttcctGgccaggaggctgtgcttgat	15	7	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	9059268	9059268	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28178	p.P9393L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	358	0	0	228	40	14.93	-	-	-	A	9059268	G	A	9059268	3	1	652	1	0	0	0	0	1	0	0	0	10045	1348	47	4	15673	4	MUC16	19	9059268	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	3144842	9059268	50069715	244	55917										
KANK2	0	genome.wustl.edu	37	chr19	11287449	11287449	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tctctgtgctgtcgttgtctGagatgttctctgctgtgctg	12	9	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	11287449	11287449	G	C	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	nonsense	c.1589	p.S530*	0.985	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	315	0	0	232	36	13.33	-	-	-	C	11287449	G	C	11287449	4	2	652	1	0	0	0	0	0	1	0	0	8031	1294	45	2	1018	2	KANK2	19	11287449	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2228181	11287449	47841534	245	55918										
ZNF625	0	genome.wustl.edu	37	chr19	12256762	12256762	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ataaggtttccccccagtgtGagcccattcatgtgttcgaa	9	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	12256762	12256762	G	A	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	missense	c.469	p.H157Y	0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	313	1	0.32	198	29	12.72	-	-	-	A	12256762	G	A	12256762	3	1	652	1	0	0	0	0	1	0	0	0	18145	1290	45	2	653	2	ZNF625	19	12256762	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	969313	12256762	46872221	246	55919										
FAM129C	0	genome.wustl.edu	37	chr19	17660294	17660294	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccaatgatgtatcctgcactCtggacggctgcttggaggtc	12	11	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	17660294	17660294	C	G	SNP	FAM129C	ENST00000335393	human	ensembl	69_37n	1	known	missense	c.1801	p.L601V	0.001	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	192	0	0	107	77	41.85	-	-	-	G	17660294	C	G	17660294	3	3	652	1	0	0	0	0	1	0	0	0	5478	912	32	2	1859	2	FAM129C	19	17660294	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5403532	17660294	41468689	247	55920										
RAB3A	0	genome.wustl.edu	37	chr19	18309660	18309660	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aggtcttgatctgggtggacCtataggaggcaccaatgggg	16	7	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	18309660	18309660	C	G	SNP	RAB3A	ENST00000222256	human	ensembl	69_37n	-1	known	splice_site	c.348-1	e3-1	1.000	-	-	-	no_errors	RAB3A	HGNC	ENSG00000105649	150	0	0	111	31	21.68	-	-	-	G	18309660	C	G	18309660	5	3	652	1	0	0	0	0	0	0	1	0	13014	695	24	4	323	4	RAB3A	19	18309660	Splice_Site	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	649366	18309660	40819323	248	55921										
ELL	0	genome.wustl.edu	37	chr19	18562372	18562372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctcacttacctgtgggggcGaggccgagcgcccacgctcg	14	16	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	18562372	18562372	G	C	SNP	ELL	ENST00000262809	human	ensembl	69_37n	-1	known	missense	c.956	p.S319W	0.674	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656	22	0	0	20	5	20	-	-	-	C	18562372	G	C	18562372	3	2	652	1	0	0	0	0	1	0	0	0	5099	1059	37	3	933	3	ELL	19	18562372	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	252712	18562372	40566611	249	55922										
TMEM59L	0	genome.wustl.edu	37	chr19	18729040	18729040	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cagcaaggccaaggtggagtCtgaagagccacaggacaatg	14	9	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	18729040	18729040	C	T	SNP	TMEM59L	ENST00000262817	human	ensembl	69_37n	1	known	missense	c.740	p.S247F	0.005	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59	-	no_errors	TMEM59L	HGNC	ENSG00000105696	83	0	0	84	21	20	-	-	-	T	18729040	C	T	18729040	3	4	652	1	0	0	0	0	1	0	0	0	16281	913	32	2	762	2	TMEM59L	19	18729040	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	166668	18729040	40399943	250	55923										
ZNF681	0	genome.wustl.edu	37	chr19	23937695	23937695	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcttgttccagacaggtgatCaggtctggcttagagacaac	11	9	3	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	23937695	23937695	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	silent	c.156	p.L52	0.160	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	513	0	0	387	56	12.61	-	-	-	T	23937695	C	T	23937695	2	4	652	1	0	0	0	0	0	0	0	1	18184	813	29	2		2	ZNF681	19	23937695	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5208655	23937695	35191288	251	55924										
AKT2	0	genome.wustl.edu	37	chr19	40741906	40741906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gatgagctcgaagaggcgctCgtggtcctggttgtagaagg	17	7	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	40741906	40741906	C	T	SNP	AKT2	ENST00000392038	human	ensembl	69_37n	-1	known	missense	c.1066	p.E356K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT2	HGNC	ENSG00000105221	132	0	0	107	62	36.47	-	-	-	T	40741906	C	T	40741906	3	4	652	1	0	0	0	0	1	0	0	0	480	893	31	1	395	1	AKT2	19	40741906	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	16804211	40741906	18387077	252	55925										
PLD3	0	genome.wustl.edu	37	chr19	40880424	40880424	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgtgtccaagtggccgcactCcagacctgaaggctctactc	10	14	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	40880424	40880424	C	G	SNP	PLD3	ENST00000356508	human	ensembl	69_37n	1	known	missense	c.916	p.P306A	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223	173	0	0	115	42	26.58	-	-	-	G	40880424	C	G	40880424	3	3	652	1	0	0	0	0	1	0	0	0	12121	855	30	2	946	2	PLD3	19	40880424	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	138518	40880424	18248559	253	55926										
ITPKC	0	genome.wustl.edu	37	chr19	41224139	41224139	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctcttctttcgacgagtctGaggatgacgtggtggccggg	15	10	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	41224139	41224139	G	C	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	missense	c.1099	p.E367Q	1.000	NULL	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	21	0	0	16	8	33.33	-	-	-	C	41224139	G	C	41224139	3	2	652	1	0	0	0	0	1	0	0	0	7973	1291	45	2	1101	2	ITPKC	19	41224139	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	343715	41224139	17904844	254	55927										
CA11	0	genome.wustl.edu	37	chr19	49143054	49143054	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctccgctcacgttgacaaaGaggctgagaatggccaggcc	12	13	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	49143054	49143054	G	C	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	silent	c.558	p.L186	0.987	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	114	0	0	148	73	33.03	-	-	-	C	49143054	G	C	49143054	2	2	652	1	0	0	0	0	0	0	0	1	2537	929	33	2		2	CA11	19	49143054	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7918915	49143054	9985929	255	55928										
GYS1	0	genome.wustl.edu	37	chr19	49494681	49494681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccccaccaggaagtagttgtCgccccattcgtcccctgtca	8	17	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	49494681	49494681	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.178	p.D60N	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	91	0	0	152	22	12.64	-	-	-	T	49494681	C	T	49494681	3	4	652	1	0	0	0	0	1	0	0	0	6963	884	31	1	2095	1	GYS1	19	49494681	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	351627	49494681	9634302	256	55929										
SIGLEC7	0	genome.wustl.edu	37	chr19	51649334	51649334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agctcagaactctctgggttCccagcacgtttccctgaacc	8	15	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	51649334	51649334	C	T	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.983	p.S328F	0.604	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	209	0	0	213	139	39.49	-	-	-	T	51649334	C	T	51649334	3	4	652	1	0	0	0	0	1	0	0	0	14402	855	30	2	997	2	SIGLEC7	19	51649334	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	2154653	51649334	7479649	257	55930										
SIGLEC5	0	genome.wustl.edu	37	chr19	52132711	52132711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tggtcctcgggcctgggggtGagggtgagctccgaggagcg	21	9	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	52132711	52132711	G	A	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	silent	c.600	p.L200	0.082	pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	293	0	0	477	73	13.25	-	-	-	A	52132711	G	A	52132711	2	1	652	1	0	0	0	0	0	0	0	1	14400	1277	45	2		2	SIGLEC5	19	52132711	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	483377	52132711	6996272	258	55931										
LILRB3	0	genome.wustl.edu	37	chr19	54723032	54723032	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttgctgtgacgctgacgtcgGaggaggaggaagaggaggag	20	5	0	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	19	54723032	54723032	G	C	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	silent	c.1443	p.L481	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	289	0	0	354	67	15.91	-	-	-	C	54723032	G	C	54723032	2	2	652	1	0	0	0	0	0	0	0	1	8847	1161	41	2		2	LILRB3	19	54723032	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2590321	54723032	4405951	259	55932										
SIRPG	0	genome.wustl.edu	37	chr20	1617003	1617003	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cctgtggggtccacgttggtCtggaagtctgagagctcatt	14	9	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	20	1617003	1617003	C	G	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.579	p.Q193H	0.023	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	617	0	0	533	167	23.86	-	-	-	G	1617003	C	G	1617003	3	3	652	1	0	0	0	0	1	0	0	0	14425	912	32	2	596	2	SIRPG	20	1617003	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		1617003	61408517	260	55933										
ABHD12	0	genome.wustl.edu	37	chr20	25281495	25281495	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ccaggctcagtgctggtgctCaggctccgacttccccagga	12	15	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	20	25281495	25281495	C	G	SNP	ABHD12	ENST00000339157	human	ensembl	69_37n	-1	known	missense	c.1183	p.E395Q	0.074	NULL	pfam_AB_hydrolase_1,pfam_AB_hydrolase_3	-	no_errors	ABHD12	HGNC	ENSG00000100997	156	0	0	148	17	10.3	-	-	-	G	25281495	C	G	25281495	3	3	652	1	0	0	0	0	1	0	0	0	76	835	29	2	79	2	ABHD12	20	25281495	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	23664492	25281495	37744025	261	55934										
ZNF334	0	genome.wustl.edu	37	chr20	45132914	45132914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcttctccttgctccaatttGaaaatcacatctggtttgct	5	11	4	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	20	45132914	45132914	G	C	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.180	p.F60L	0.479	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	344	0	0	592	94	13.66	-	-	-	C	45132914	G	C	45132914	3	2	652	1	0	0	0	0	1	0	0	0	17947	1281	45	2	1870	2	ZNF334	20	45132914	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	19851419	45132914	17892606	262	55935										
NFATC2	0	genome.wustl.edu	37	chr20	50090599	50090599	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tgaactcggaaaaccagtctCacccgcgtgttctttcttcc	7	14	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	20	50090599	50090599	C	G	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	silent	c.1626	p.V542	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	199	0	0	284	35	10.94	-	-	-	G	50090599	C	G	50090599	2	3	652	1	0	0	0	0	0	0	0	1	10434	813	29	2		2	NFATC2	20	50090599	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4957685	50090599	12934921	263	55936										
KRTAP26-1	0	genome.wustl.edu	37	chr21	31692282	31692282	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gggcagaggtcgatggaggtGagaggaatatggcgggaggt	22	3	0	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	21	31692282	31692282	G	C	SNP	KRTAP26-1	ENST00000360542	human	ensembl	69_37n	-1	known	silent	c.72	p.L24	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP26-1	HGNC	ENSG00000197683	288	0	0	267	46	14.7	-	-	-	C	31692282	G	C	31692282	2	2	652	1	0	0	0	0	0	0	0	1	8597	1277	45	2		2	KRTAP26-1	21	31692282	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09		31692282	16437613	264	55937										
DNAJC28	0	genome.wustl.edu	37	chr21	34861131	34861131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gttatcttttgctgtttgctCtgtcttatatttttaacaat	5	6	3	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	21	34861131	34861131	C	G	SNP	DNAJC28	ENST00000314399	human	ensembl	69_37n	-1	known	missense	c.570	p.Q190H	0.993	NULL	pfam_DnaJ_homolog_subfam-C_membr-28,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC28	HGNC	ENSG00000177692	408	0	0	389	121	23.68	-	-	-	G	34861131	C	G	34861131	3	3	652	1	0	0	0	0	1	0	0	0	4681	912	32	2	600	2	DNAJC28	21	34861131	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	3168849	34861131	13268764	265	55938										
DSCAM	0	genome.wustl.edu	37	chr21	42064818	42064818	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gaggggataatgcacttgaaGaccgcaacattgcctctcat	10	10	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	21	42064818	42064818	G	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.426	p.V142	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	182	0	0	235	35	12.96	-	-	-	C	42064818	G	C	42064818	2	2	652	1	0	0	0	0	0	0	0	1	4803	929	33	2		2	DSCAM	21	42064818	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	7203687	42064818	6065077	266	55939										
UMODL1	0	genome.wustl.edu	37	chr21	43505408	43505408	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttcccttgtgtagctccagaGagggaccctgtgggctcctg	13	12	0	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	21	43505408	43505408	G	A	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	silent	c.489	p.E163	0.001	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	121	0	0	131	18	12.08	-	-	-	A	43505408	G	A	43505408	2	1	652	1	0	0	0	0	0	0	0	1	17077	933	33	2		2	UMODL1	21	43505408	Silent	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	1440590	43505408	4624487	267	55940										
OSBP2	0	genome.wustl.edu	37	chr22	31301872	31301872	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcagagctggccctgaccctCaacgagcacgaggagggcgt	14	13	2	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	22	31301872	31301872	C	T	SNP	OSBP2	ENST00000452656	human	ensembl	69_37n	1	novel	nonsense	c.1132	p.Q378*	1.000	NULL	pfam_Oxysterol-bd	-	no_start_codon	OSBP2	HGNC	ENSG00000184792	22	0	0	20	7	25.93	-	-	-	T	31301872	C	T	31301872	4	4	652	1	0	0	0	0	0	1	0	0	11347	813	29	2	2474	2	OSBP2	22	31301872	Nonsense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09		31301872	20002694	268	55941										
DRG1	0	genome.wustl.edu	37	chr22	31819322	31819322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agcattctggctgaatacaaGattcataatgccgatgtgac	9	8	2	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	22	31819322	31819322	G	C	SNP	DRG1	ENST00000331457	human	ensembl	69_37n	1	known	missense	c.639	p.K213N	1.000	tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG1	HGNC	ENSG00000185721	198	0	0	70	94	57.32	-	-	-	C	31819322	G	C	31819322	3	2	652	1	0	0	0	0	1	0	0	0	4796	933	33	2	661	2	DRG1	22	31819322	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	517450	31819322	19485244	269	55942										
XRCC6	0	genome.wustl.edu	37	chr22	42032677	42032677	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	caattcaagatgagtcataaGaggatcatgctgttcaccaa	8	8	4	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	22	42032677	42032677	G	C	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	1	known	missense	c.492	p.K164N	1.000	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,tigrfam_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	184	0	0	114	24	17.39	-	-	-	C	42032677	G	C	42032677	3	2	652	1	0	0	0	0	1	0	0	0	17554	933	33	2	506	2	XRCC6	22	42032677	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	10213355	42032677	9271889	270	55943										
DMD	0	genome.wustl.edu	37	chrX	32429984	32429984	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gtaaggatttttcagtctccTgggcagactggatgctctgt	12	8	3	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	32429984	32429984	T	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.4118	p.Q1373R	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	299	0	0	251	74	22.7	-	-	-	C	32429984	T	C	32429984	3	2	652	1	0	0	0	0	1	0	0	0	4616	1580	55	5	7287	5	DMD	23	32429984	Missense_Mutation	SNP	T	TCGA-C8-A1HM-01A-12D-A135-09		32429984	122840576	271	55944										
FAM47C	0	genome.wustl.edu	37	chrX	37028630	37028630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcgggtgtccagtctccacgCggagcctcctgagagtcgcg	14	14	1	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	37028630	37028630	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.2147	p.A716V	0.003	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	168	0	0	111	35	23.97	-	-	-	T	37028630	C	T	37028630	3	4	652	1	0	0	0	0	1	0	0	0	5617	768	27	1	2149	1	FAM47C	23	37028630	Missense_Mutation	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4598646	37028630	118241930	272	55945										
PAGE2	0	genome.wustl.edu	37	chrX	55117845	55117845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	gagatggtcctgatgtcaggGagggtattatgcccactttt	13	7	1	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	55117845	55117845	G	A	SNP	PAGE2	ENST00000374968	human	ensembl	69_37n	1	known	missense	c.274	p.E92K	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE2	HGNC	ENSG00000234068	747	0	0	522	601	53.42	-	-	-	A	55117845	G	A	55117845	3	1	652	1	0	0	0	0	1	0	0	0	11463	1175	41	2	284	2	PAGE2	23	55117845	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	18089215	55117845	100152715	273	55946										
GPRASP1	0	genome.wustl.edu	37	chrX	101910384	101910384	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	tcaaccaagaggctgaggaaGagaccatttttgggtcgtgg	14	7	1	3			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	101910384	101910384	G	C	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	missense	c.1543	p.E515Q	0.982	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	219	0	0	178	54	23.28	-	-	-	C	101910384	G	C	101910384	3	2	652	1	0	0	0	0	1	0	0	0	6773	943	33	2	1545	2	GPRASP1	23	101910384	Missense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	46792539	101910384	53360176	274	55947										
COL4A6	0	genome.wustl.edu	37	chrX	107436904	107436904	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	atgaaaacatctgggcctggCaggccaatgtcacccttttg	10	11	2	1			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	107436904	107436904	C	T	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	silent	c.1029	p.L343	0.958	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	187	0	0	187	22	10.53	-	-	-	T	107436904	C	T	107436904	2	4	652	1	0	0	0	0	0	0	0	1	3725	697	25	4		4	COL4A6	23	107436904	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	5526520	107436904	47833656	275	55948										
AGTR2	0	genome.wustl.edu	37	chrX	115304469	115304469	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	ttgggattcaccaacagctgCgttaatccgtttctgtattg	9	9	2	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	115304469	115304469	C	T	SNP	AGTR2	ENST00000371906	human	ensembl	69_37n	1	known	silent	c.936	p.C312	0.782	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor,prints_Chemokine_rcpt	-	no_errors	AGTR2	HGNC	ENSG00000180772	494	1	0.2	162	270	62.36	-	-	-	T	115304469	C	T	115304469	2	4	652	1	0	0	0	0	0	0	0	1	402	776	27	1		1	AGTR2	23	115304469	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	7867565	115304469	39966091	276	55949										
GLUD2	0	genome.wustl.edu	37	chrX	120182613	120182613	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	aattgcaacatgggtccattCtgggcttccccaaggcaaag	10	11	1	0			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	120182613	120182613	C	T	SNP	GLUD2	ENST00000328078	human	ensembl	69_37n	1	known	silent	c.1075	p.L359	0.988	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890	578	0	0	631	78	11	-	-	-	T	120182613	C	T	120182613	2	4	652	1	0	0	0	0	0	0	0	1	6529	912	32	2		2	GLUD2	23	120182613	Silent	SNP	C	TCGA-C8-A1HM-01A-12D-A135-09	4878144	120182613	35087947	277	55950										
GRIA3	0	genome.wustl.edu	37	chrX	122561910	122561910	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	agaggatggtttctcccataGagagtgctgaagacttagct	12	7	1	4			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	122561910	122561910	G	T	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	nonsense	c.1996	p.E666*	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	356	0	0	199	126	38.77	-	-	-	T	122561910	G	T	122561910	4	4	652	1	0	0	0	0	0	1	0	0	6820	943	33	2	2042	2	GRIA3	23	122561910	Nonsense_Mutation	SNP	G	TCGA-C8-A1HM-01A-12D-A135-09	2379297	122561910	32708650	278	55951										
IRAK1	0	genome.wustl.edu	37	chrX	153278076	153278076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.568345323741007	158	1.26939401104603e-60	4.02495543672014	4.70634553033812	3.23825960136121	2.59300789906496e-05	0.00115270987512979	119	cttctgtcgggcagggttgaTgataatctgcggtggctctg	15	8	3	2			TCGA-C8-A1HM-01A-12D-A135-09	TCGA-C8-A1HM-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2f9165d-9fe7-492e-9b4c-3cb4200c6e85	96166aa5-1642-4a59-a88e-9b9f9291b453	X	153278076	153278076	T	C	SNP	IRAK1	ENST00000369980	human	ensembl	69_37n	-1	known	missense	c.1984	p.I662V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	93	0	0	42	66	61.11	-	-	-	C	153278076	T	C	153278076	3	2	652	1	0	0	0	0	1	0	0	0	7875	1464	51	5	162	5	IRAK1	23	153278076	Missense_Mutation	SNP	T	TCGA-C8-A1HM-01A-12D-A135-09	30716166	153278076	1992484	279	55952										
KIF14	0	genome.wustl.edu	37	chr1	200587127	200587128	+	Frame_Shift_Del	DEL	CT	CT	-													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	acactttgatatccaacttgCtctgagtaggtttcgttgtc							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	1	200587127	200587128	CT	-	DEL	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	frame_shift_del	c.725_724	p.S242fs	0.002:0.080	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	233	0	0	268	48	15.09	-	-	-	-	200587128	CT	-	200587127	7	5	653	1	0	1	0	1	0	0	0	0	8328	797	28	0	4337	0	KIF14	1	200587127	Frame_Shift_Del	DEL	CT	TCGA-C8-A1HN-01A-11D-A135-09		200587127	48663494	1	55953										
KIDINS220	0	genome.wustl.edu	37	chr2	8926362	8926362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tatcttcagtcttgaatactCgaaaaagcctggttgccaaa	7	9	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	2	8926362	8926362	C	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.1913	p.R638L	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	98	0	0	69	27	28.12	-	-	-	A	8926362	C	A	8926362	3	1	653	1	0	0	0	0	1	0	0	0	8323	884	31	3	3462	3	KIDINS220	2	8926362	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		8926362	234273011	2	55954										
KCNJ3	0	genome.wustl.edu	37	chr2	155711277	155711277	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	gaacatcatatactgaagatGaagttctttggggtcatcgt	10	6	3	3			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	2	155711277	155711277	G	T	SNP	KCNJ3	ENST00000295101	human	ensembl	69_37n	1	known	nonsense	c.958	p.E320*	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ3	HGNC	ENSG00000162989	359	0	0	238	34	12.5	-	-	-	T	155711277	G	T	155711277	4	4	653	1	0	0	0	0	0	1	0	0	8106	1291	45	2	968	2	KCNJ3	2	155711277	Nonsense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	146784915	155711277	87488096	3	55955										
LY75	0	genome.wustl.edu	37	chr2	160690697	160690697	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ggacatttaacactgtcaacTggtttgacctctttttcagt	7	9	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	2	160690697	160690697	T	C	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	silent	c.3699	p.P1233	0.619	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	199	0	0	125	50	28.57	-	-	-	C	160690697	T	C	160690697	2	2	653	1	0	0	0	0	0	0	0	1	9166	1567	55	5		5	LY75	2	160690697	Silent	SNP	T	TCGA-C8-A1HN-01A-11D-A135-09	4979420	160690697	82508676	4	55956										
XCR1	0	genome.wustl.edu	37	chr3	46062898	46062898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	agacggaggtgaggtaccacGtgagttcggaataatcacag	14	7	1	3			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	3	46062898	46062898	G	A	SNP	XCR1	ENST00000309285	human	ensembl	69_37n	-1	known	missense	c.542	p.T181M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	141	0	0	81	24	22.86	-	-	-	A	46062898	G	A	46062898	3	1	653	1	0	0	0	0	1	0	0	0	17522	1145	40	1	463	1	XCR1	3	46062898	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09		46062898	151959532	5	55957										
SEMA3F	0	genome.wustl.edu	37	chr3	50225261	50225261	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	actttaagcacgtcgtcacaCgagtgcagctgcatgtactg	10	11	1	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	3	50225261	50225261	C	T	SNP	SEMA3F	ENST00000002829	human	ensembl	69_37n	1	known	nonsense	c.2071	p.R691*	0.961	smart_Ig_sub	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3F	HGNC	ENSG00000001617	17	0	0	11	7	38.89	-	-	-	T	50225261	C	T	50225261	4	4	653	1	0	0	0	0	0	1	0	0	14117	528	19	1	2141	1	SEMA3F	3	50225261	Nonsense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	4162363	50225261	147797169	6	55958										
PSMD6	0	genome.wustl.edu	37	chr3	64004302	64004302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ttggaagaaaacagagtaacGgcattcatagagtgaaaaca	10	5	1	4			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	3	64004302	64004302	G	A	SNP	PSMD6	ENST00000295901	human	ensembl	69_37n	-1	known	missense	c.799	p.R267C	1.000	pfam_PCI_dom	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD6	HGNC	ENSG00000163636	137	0	0	90	32	26.23	-	-	-	A	64004302	G	A	64004302	3	1	653	1	0	0	0	0	1	0	0	0	12782	1116	39	1	386	1	PSMD6	3	64004302	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	13779041	64004302	134018128	7	55959										
TNIK	0	genome.wustl.edu	37	chr3	170846562	170846562	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	aggctgaactccactaatgcTgaaggactccgaccttgggg	12	11	0	2			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	3	170846562	170846562	T	G	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.1714	p.S572R	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	198	0	0	137	39	22.16	-	-	-	G	170846562	T	G	170846562	3	3	653	1	0	0	0	0	1	0	0	0	16408	1580	55	5	2440	5	TNIK	3	170846562	Missense_Mutation	SNP	T	TCGA-C8-A1HN-01A-11D-A135-09	106842260	170846562	27175868	8	55960										
MND1	0	genome.wustl.edu	37	chr4	154335914	154335914	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tctttatagataacatattcGcaataaaatcttgggccaaa	5	7	2	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	4	154335914	154335914	G	T	SNP	MND1	ENST00000240488	human	ensembl	69_37n	1	known	missense	c.523	p.A175S	1.000	pfam_Mnd1,pirsf_Mnd1	pfam_Mnd1,pfam_Pencillinase_R,pirsf_Mnd1	-	no_errors	MND1	HGNC	ENSG00000121211	58	0	0	64	11	14.67	-	-	-	T	154335914	G	T	154335914	3	4	653	1	0	0	0	0	1	0	0	0	9747	1087	38	3	553	3	MND1	4	154335914	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09		154335914	36818362	9	55961										
SERINC5	0	genome.wustl.edu	37	chr5	79473765	79473765	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tgattttcaaggtcagtagaCagaagataaagaagaaacaa	9	4	2	6			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	5	79473765	79473765	C	G	SNP	SERINC5	ENST00000509193	human	ensembl	69_37n	-1	known	missense	c.317	p.C106S	0.990	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	301	0	0	177	57	24.36	-	-	-	G	79473765	C	G	79473765	3	3	653	1	0	0	0	0	1	0	0	0	14171	478	17	4	1146	4	SERINC5	5	79473765	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		79473765	101441495	10	55962										
ABLIM3	0	genome.wustl.edu	37	chr5	148590290	148590290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tgtgaacttcttcttgcaggGatggtgttccatactgtgag	12	7	2	2			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	5	148590290	148590290	G	T	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	missense	c.577	p.D193Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	339	0	0	181	46	20.26	-	-	-	T	148590290	G	T	148590290	3	4	653	1	0	0	0	0	1	0	0	0	96	1188	41	2	599	2	ABLIM3	5	148590290	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	69116525	148590290	32324970	11	55963										
TCTE1	0	genome.wustl.edu	37	chr6	44250153	44250153	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	cgcaggcggctgtggctcagCagcttggcagcacctcgtgc	15	14	1	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	6	44250153	44250153	C	A	SNP	TCTE1	ENST00000371505	human	ensembl	69_37n	-1	known	silent	c.990	p.L330	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221	225	0	0	142	45	24.06	-	-	-	A	44250153	C	A	44250153	2	1	653	1	0	0	0	0	0	0	0	1	15812	697	25	4		4	TCTE1	6	44250153	Silent	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		44250153	126864914	12	55964										
TMEM200A	0	genome.wustl.edu	37	chr6	130762622	130762622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	accaaggaataattccattgGggagtcgttgtcgagtcagt	12	7	1	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	6	130762622	130762622	G	A	SNP	TMEM200A	ENST00000296978	human	ensembl	69_37n	1	known	missense	c.1055	p.G352E	0.933	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484	126	0	0	72	33	31.43	-	-	-	A	130762622	G	A	130762622	3	1	653	1	0	0	0	0	1	0	0	0	16218	1232	43	4	1057	4	TMEM200A	6	130762622	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	86512469	130762622	40352445	13	55965										
ICA1	0	genome.wustl.edu	37	chr7	8167582	8167583	+	Frame_Shift_Del	DEL	GG	GG	-													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	cctgagcctgtctgggccttGgggtctggctctcccagggc							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	7	8167582	8167583	GG	-	DEL	ICA1	ENST00000422063	human	ensembl	69_37n	-1	known	frame_shift_del	c.1338_1337	p.P446fs	0.061:0.144	pfam_Islet_autoAg_Ica1_C	pfam_Arfaptin_homology_dom,pfam_Islet_autoAg_Ica1_C,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	183	0	0	111	33	22.76	-	-	-	-	8167583	GG	-	8167582	7	5	653	1	0	1	0	1	0	0	0	0	7531	1335	47	0	208	0	ICA1	7	8167582	Frame_Shift_Del	DEL	GG	TCGA-C8-A1HN-01A-11D-A135-09		8167582	150971081	14	55966										
LRRN3	0	genome.wustl.edu	37	chr7	110763274	110763274	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	acaagaactctatattaatcAcaacttgctttctacaattt	2	9	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	7	110763274	110763274	A	G	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	missense	c.446	p.H149R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	185	0	0	136	37	21.39	-	-	-	G	110763274	A	G	110763274	3	3	653	1	0	0	0	0	1	0	0	0	9102	159	6	5	448	5	LRRN3	7	110763274	Missense_Mutation	SNP	A	TCGA-C8-A1HN-01A-11D-A135-09	102595692	110763274	48375389	15	55967										
CALD1	0	genome.wustl.edu	37	chr7	134613541	134613541	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	aatgacgatgatgaagaggaGgcagcccgggaacggcgccg	17	9	0	4			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	7	134613541	134613541	G	A	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	silent	c.108	p.E36	1.000	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	69	0	0	53	12	18.46	-	-	-	A	134613541	G	A	134613541	2	1	653	1	0	0	0	0	0	0	0	1	2606	991	35	4		4	CALD1	7	134613541	Silent	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	23850267	134613541	24525122	16	55968										
PREX2	0	genome.wustl.edu	37	chr8	69000006	69000006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tggacttggcttccagatccGgggatttggcccttctgttg	13	10	1	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	8	69000006	69000006	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.2075	p.R692Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	428	0	0	256	498	66.05	-	-	-	A	69000006	G	A	69000006	3	1	653	1	0	0	0	0	1	0	0	0	12558	1116	39	1	2149	1	PREX2	8	69000006	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09		69000006	77364016	17	55969										
ZNF658	0	genome.wustl.edu	37	chr9	40773232	40773232	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	cattcatagggttttctaccTgtgtgaattctctgatgtgc	9	8	3	2			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	9	40773232	40773232	T	G	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	silent	c.2043	p.T681	0.091	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	258	0	0	94	57	37.75	-	-	-	G	40773232	T	G	40773232	2	3	653	1	0	0	0	0	0	0	0	1	18165	1567	55	5		5	ZNF658	9	40773232	Silent	SNP	T	TCGA-C8-A1HN-01A-11D-A135-09		40773232	100440199	18	55970										
TSC1	0	genome.wustl.edu	37	chr9	135772688	135772688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	attcaaacacctgggttatcCttttctgagcctcatacctg	6	12	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	9	135772688	135772688	C	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.2858	p.R953K	1.000	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	231	0	0	148	167	53.02	-	-	-	T	135772688	C	T	135772688	3	4	653	1	0	0	0	0	1	0	0	0	16701	681	24	4	644	4	TSC1	9	135772688	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	94999456	135772688	5440743	19	55971										
GATA3	0	genome.wustl.edu	37	chr10	8115876	8115877	+	Frame_Shift_Ins	INS	-	-	G													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ctccctgagccacatctcgcINSccttcagccactccagccac							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	10	8115876	8115877	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1225_1226	p.P409fs	1.000:0.998	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	215	0	0	125	38	23.31	-	-	-	G	8115877	-	G	8115876	7	5	653	1	0	1	1	0	0	0	0	0	6305	739	26	0	1243	0	GATA3	10	8115876	Frame_Shift_Ins	INS	-	TCGA-C8-A1HN-01A-11D-A135-09		8115876	127418871	20	55972	441	2								
GATA3	0	genome.wustl.edu	37	chr10	8115877	8115877	+	Missense_Mutation	SNP	C	C	A													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ctccctgagccacatctcgcCcttcagccactccagccaca							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	10	8115877	8115877	C	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.1226	p.P409H	0.998	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	213	0	0	124	39	23.64	-	-	-	A	8115877	C	A	8115877	3	1	653	1	0	0	0	0	1	0	0	0	6305	623	22	4	1244	4	GATA3	10	8115877	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	1	8115877	127418870	21	55973	441	2								
ATHL1	0	genome.wustl.edu	37	chr11	289954	289954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ctgcacgtgagcggcgtgtaCaatggggctggcggggacac	18	10	0	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	11	289954	289954	C	T	SNP	ATHL1	ENST00000482937	human	ensembl	69_37n	1	known	missense	c.35	p.T12I	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATHL1	HGNC	ENSG00000142102	36	0	0	20	10	33.33	-	-	-	T	289954	C	T	289954	3	4	653	1	0	0	0	0	1	0	0	0	1108	489	17	4	140	4	ATHL1	11	289954	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		289954	134716562	22	55974										
SCYL1	0	genome.wustl.edu	37	chr11	65293726	65293726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	atgtattcggcccagggcaaCggtgggggacctccccgcaa	14	13	0	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	11	65293726	65293726	C	T	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	silent	c.507	p.N169	0.839	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	95	0	0	44	20	31.25	-	-	-	T	65293726	C	T	65293726	2	4	653	1	0	0	0	0	0	0	0	1	14035	535	19	1		1	SCYL1	11	65293726	Silent	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	65003772	65293726	69712790	23	55975										
UCP3	0	genome.wustl.edu	37	chr11	73714978	73714978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	catataccgggtcttcaccaCgtccaccggggaggccacca	10	16	2	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	11	73714978	73714978	C	T	SNP	UCP3	ENST00000314032	human	ensembl	69_37n	-1	known	missense	c.718	p.V240M	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	UCP3	HGNC	ENSG00000175564	62	0	0	55	21	27.63	-	-	-	T	73714978	C	T	73714978	3	4	653	1	0	0	0	0	1	0	0	0	17029	536	19	1	232	1	UCP3	11	73714978	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	8421252	73714978	61291538	24	55976										
FGF23	0	genome.wustl.edu	37	chr12	4479664	4479664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tgaacaggaggccggggccgGggtcatccgggcccggggct	20	12	1	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	4479664	4479664	G	A	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	missense	c.601	p.P201S	0.005	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	39	0	0	29	6	17.14	-	-	-	A	4479664	G	A	4479664	3	1	653	1	0	0	0	0	1	0	0	0	5898	1232	43	4	158	4	FGF23	12	4479664	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09		4479664	129372231	25	55977										
VWF	0	genome.wustl.edu	37	chr12	6230460	6230460	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	acttccgaaaaggctgcatcGggccgtggatgacctgccgc	13	13	0	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	6230460	6230460	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	nonsense	c.100	p.R34*	0.642	pirsf_VWF,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	104	0	0	121	24	16.55	-	-	-	A	6230460	G	A	6230460	4	1	653	1	0	0	0	0	0	1	0	0	17343	1124	39	1	8541	1	VWF	12	6230460	Nonsense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	1750796	6230460	127621435	26	55978										
KRT72	0	genome.wustl.edu	37	chr12	52981585	52981585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	gcccgggcatctttcagggcGcagtccccccgctgttcagc	12	17	3	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	52981585	52981585	G	A	SNP	KRT72	ENST00000293745	human	ensembl	69_37n	-1	known	silent	c.1140	p.C380	0.004	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486	83	0	0	62	24	27.91	-	-	-	A	52981585	G	A	52981585	2	1	653	1	0	0	0	0	0	0	0	1	8538	1079	38	1		1	KRT72	12	52981585	Silent	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	46751125	52981585	80870310	27	55979										
ATXN2	0	genome.wustl.edu	37	chr12	111951217	111951217	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	gactggtccttgctactggaGgagtagctgcttcactgggt	14	9	1	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	111951217	111951217	G	C	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.1982	p.P661R	0.998	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	320	0	0	128	107	45.53	-	-	-	C	111951217	G	C	111951217	3	2	653	1	0	0	0	0	1	0	0	0	1215	1000	35	4	2019	4	ATXN2	12	111951217	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	58969632	111951217	21900678	28	55980										
TBX3	0	genome.wustl.edu	37	chr12	115120697	115120698	+	Frame_Shift_Ins	INS	-	-	GACC													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tagcctccaggtgcaccttgINSgggtcgtcctccacctcttc							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	115120697	115120698	-	GACC	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.309_308	p.K104fs	0.967:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	56	0	0	47	9	16.07	-	-	-	GACC	115120698	-	GACC	115120697	7	5	653	1	0	1	1	0	0	0	0	0	15754	1335	47	0	1954	0	TBX3	12	115120697	Frame_Shift_Ins	INS	-	TCGA-C8-A1HN-01A-11D-A135-09	3169480	115120697	18731198	29	55981										
PIWIL1	0	genome.wustl.edu	37	chr12	130827177	130827177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	cagagccagaggaagggcccGcggtcaggagacagcgcagc	17	12	1	3			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	12	130827177	130827177	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.41	p.R14H	0.917	pfam_GAGE	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	44	0	0	29	14	31.82	-	-	-	A	130827177	G	A	130827177	3	1	653	1	0	0	0	0	1	0	0	0	12031	1087	38	1	43	1	PIWIL1	12	130827177	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	15706480	130827177	3024718	30	55982										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256807	69256807	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ggtgcggcacagctccgtctTgtacttggggtggcgggtca	17	10	2	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	14	69256807	69256807	T	A	SNP	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	nonsense	c.460	p.K154*	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	114	0	0	14	34	70.83	-	-	-	A	69256807	T	A	69256807	4	1	653	1	0	0	0	0	0	1	0	0	17742	1821	63	5	560	5	ZFP36L1	14	69256807	Nonsense_Mutation	SNP	T	TCGA-C8-A1HN-01A-11D-A135-09		69256807	38092733	31	55983										
FMN1	0	genome.wustl.edu	37	chr15	33359773	33359773	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ttcttttctctgacttccctCtgattctgtctccacgcttg	5	14	5	2			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	15	33359773	33359773	C	T	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.313	p.E105K	0.014	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	102	0	0	54	10	15.62	-	-	-	T	33359773	C	T	33359773	3	4	653	1	0	0	0	0	1	0	0	0	5995	922	32	2	3345	2	FMN1	15	33359773	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		33359773	69171619	32	55984										
WDR72	0	genome.wustl.edu	37	chr15	53889357	53889358	+	Frame_Shift_Del	DEL	CA	CA	-													0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tggcagcatctgcttcatctCacagttaccattctctgcca							TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	15	53889357	53889358	CA	-	DEL	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	frame_shift_del	c.3067_3066	p.C1022fs	0.055:0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	423	0	0	249	63	20.19	-	-	-	-	53889358	CA	-	53889357	7	5	653	1	0	1	0	1	0	0	0	0	17419	835	29	0	253	0	WDR72	15	53889357	Frame_Shift_Del	DEL	CA	TCGA-C8-A1HN-01A-11D-A135-09	20529584	53889357	48642035	33	55985										
ZNF700	0	genome.wustl.edu	37	chr19	12059318	12059318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	atatgagtatcaggaatatgGaccaaagccatataagtgtc	9	6	1	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	19	12059318	12059318	G	T	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.479	p.G160V	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	278	0	0	91	49	35	-	-	-	T	12059318	G	T	12059318	3	4	653	1	0	0	0	0	1	0	0	0	18200	1174	41	2	493	2	ZNF700	19	12059318	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09		12059318	47069665	34	55986										
ARMC6	0	genome.wustl.edu	37	chr19	19162851	19162851	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	gtgccatcacccatcatggcCaccacactgacgtggtcagg	10	15	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	19	19162851	19162851	C	G	SNP	ARMC6	ENST00000392336	human	ensembl	69_37n	1	known	missense	c.700	p.H234D	0.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676	45	0	0	18	9	33.33	-	-	-	G	19162851	C	G	19162851	3	3	653	1	0	0	0	0	1	0	0	0	959	594	21	4	635	4	ARMC6	19	19162851	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	7103533	19162851	39966132	35	55987										
CIC	0	genome.wustl.edu	37	chr19	42799050	42799050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tttgtctgcagttgaagatcCgtgaggtgcgccagaagatc	13	8	1	5			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	19	42799050	42799050	C	T	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	missense	c.4534	p.R1512C	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	73	0	0	19	24	55.81	-	-	-	T	42799050	C	T	42799050	3	4	653	1	0	0	0	0	1	0	0	0	3453	652	23	1	4612	1	CIC	19	42799050	Missense_Mutation	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	23636199	42799050	16329933	36	55988										
PLCG1	0	genome.wustl.edu	37	chr20	39792360	39792360	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	catgtttctggacagtttgtCaccttcctgttctccaaaga	7	11	3	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	20	39792360	39792360	C	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	silent	c.897	p.V299	1.000	pfam_PLipase_C_EF-hand-like,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	172	0	0	172	31	15.2	-	-	-	A	39792360	C	A	39792360	2	1	653	1	0	0	0	0	0	0	0	1	12109	813	29	2		2	PLCG1	20	39792360	Silent	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09		39792360	23233160	37	55989										
MATN4	0	genome.wustl.edu	37	chr20	43926557	43926557	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ccccgagagagatgcgctcaCctggacagatgctgcctctg	12	14	2	3			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	20	43926557	43926557	C	T	SNP	MATN4	ENST00000372754	human	ensembl	69_37n	-1	known	splice_site	c.1702+1	e8+1	1.000	-	-	-	no_errors	MATN4	HGNC	ENSG00000124159	68	0	0	48	20	28.99	-	-	-	T	43926557	C	T	43926557	5	4	653	1	0	0	0	0	0	0	1	0	9407	521	18	4	177	4	MATN4	20	43926557	Splice_Site	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	4134197	43926557	19098963	38	55990										
MXRA5	0	genome.wustl.edu	37	chrX	3238284	3238284	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	gatgttataaaggagatagaActctgggtggaagagaccat	13	4	1	3			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	3238284	3238284	A	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5442	p.S1814R	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	336	0	0	278	70	20.11	-	-	-	T	3238284	A	T	3238284	3	4	653	1	0	0	0	0	1	0	0	0	10075	40	2	5	3056	5	MXRA5	23	3238284	Missense_Mutation	SNP	A	TCGA-C8-A1HN-01A-11D-A135-09		3238284	152032276	39	55991										
SHROOM2	0	genome.wustl.edu	37	chrX	9914800	9914800	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	ctggaccgccgcgagcgcatCgtctttgacattttggccaa	11	13	1	1			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	9914800	9914800	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	silent	c.4674	p.I1558	0.480	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	103	0	0	65	31	32.29	-	-	-	T	9914800	C	T	9914800	2	4	653	1	0	0	0	0	0	0	0	1	14383	874	31	1		1	SHROOM2	23	9914800	Silent	SNP	C	TCGA-C8-A1HN-01A-11D-A135-09	6676516	9914800	145355760	40	55992										
SMC1A	0	genome.wustl.edu	37	chrX	53432455	53432455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tggtggcctccaaaggcaatGcggcgggcatcttccacgtt	13	12	1	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	53432455	53432455	G	A	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	silent	c.1881	p.R627	0.998	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	74	0	0	79	11	12.22	-	-	-	A	53432455	G	A	53432455	2	1	653	1	0	0	0	0	0	0	0	1	14870	1306	46	4		4	SMC1A	23	53432455	Silent	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	43517655	53432455	101838105	41	55993										
RIBC1	0	genome.wustl.edu	37	chrX	53453289	53453289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	catcgaggctagaagaaatcGagaaaaagagcgacaaaacc	10	8	0	4			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	53453289	53453289	G	A	SNP	RIBC1	ENST00000375327	human	ensembl	69_37n	1	known	missense	c.65	p.R22Q	0.976	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423	261	0	0	157	100	38.91	-	-	-	A	53453289	G	A	53453289	3	1	653	1	0	0	0	0	1	0	0	0	13436	1058	37	1	67	1	RIBC1	23	53453289	Missense_Mutation	SNP	G	TCGA-C8-A1HN-01A-11D-A135-09	20834	53453289	101817271	42	55994										
TSC22D3	0	genome.wustl.edu	37	chrX	106957953	106957953	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tccacctcctctctcacagcAtacatcagatgattcttcac	3	16	5	2			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	106957953	106957953	A	G	SNP	TSC22D3	ENST00000315660	human	ensembl	69_37n	-1	known	silent	c.399	p.Y133	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514	174	0	0	173	43	19.91	-	-	-	G	106957953	A	G	106957953	2	3	653	1	0	0	0	0	0	0	0	1	16705	224	8	5		5	TSC22D3	23	106957953	Silent	SNP	A	TCGA-C8-A1HN-01A-11D-A135-09	53504664	106957953	48312607	43	55995										
COL4A6	0	genome.wustl.edu	37	chrX	107412746	107412746	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	1	0.28088336783989	0	0.323015873015873	1	1	0	tcgatcacctttttgccctcTcaggcccggcttccctggag	9	16	2	0			TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a2576147-28eb-460f-9b97-916892d801e2	66a18ff8-0467-4423-aca0-0cbcec0e4513	X	107412746	107412746	T	C	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.3673	p.R1225G	0.027	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	110	0	0	97	23	19.17	-	-	-	C	107412746	T	C	107412746	3	2	653	1	0	0	0	0	1	0	0	0	3725	1559	54	5	1438	5	COL4A6	23	107412746	Missense_Mutation	SNP	T	TCGA-C8-A1HN-01A-11D-A135-09	454793	107412746	47857814	44	55996										
RSBN1	0	genome.wustl.edu	37	chr1	114340405	114340405	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tcttgcatacccaaatttaaTcggcacagctgttcatcttt	5	11	3	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	1	114340405	114340405	T	C	SNP	RSBN1	ENST00000476412	human	ensembl	69_37n	-1	known	missense	c.838	p.I280V	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RSBN1	HGNC	ENSG00000081019	102	0	0	73	53	42.06	-	-	-	C	114340405	T	C	114340405	3	2	654	1	0	0	0	0	1	0	0	0	13782	1422	50	5	1475	5	RSBN1	1	114340405	Missense_Mutation	SNP	T	TCGA-C8-A1HO-01A-11D-A13L-09		114340405	134910216	1	55997										
TPR	0	genome.wustl.edu	37	chr1	186312558	186312558	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	aacgcagactctcaacctgaGccacctcaaacctagtttca	5	15	3	2			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	1	186312558	186312558	G	C	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.3650	p.A1217G	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	78	0	0	124	51	29.14	-	-	-	C	186312558	G	C	186312558	3	2	654	1	0	0	0	0	1	0	0	0	16512	971	34	4	3541	4	TPR	1	186312558	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09	71972153	186312558	62938063	2	55998										
C1orf35	0	genome.wustl.edu	37	chr1	228289836	228289836	+	Frame_Shift_Del	DEL	T	T	-													0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	cctggccgaggctgccgaggTcccgggcccgccgctctcta							TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	1	228289836	228289836	T	-	DEL	C1orf35	ENST00000272139	human	ensembl	69_37n	-1	known	frame_shift_del	c.478	p.T160fs	0.000	NULL	pfam_Kinase_phosphorylation_domain	-	no_errors	C1orf35	HGNC	ENSG00000143793	14	0	0	2	2	40	-	-	-	-	228289836	T	-	228289836	7	5	654	1	0	1	0	1	0	0	0	0	2058	1667	58	0	325	0	C1orf35	1	228289836	Frame_Shift_Del	DEL	T	TCGA-C8-A1HO-01A-11D-A13L-09	41977278	228289836	20960785	3	55999										
C2orf71	0	genome.wustl.edu	37	chr2	29293999	29293999	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	ggggaagttcgccgctttgtGgtgggtgggcttagcaccct	17	9	0	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	2	29293999	29293999	G	T	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	silent	c.3129	p.T1043	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	22	0	0	30	10	25	-	-	-	T	29293999	G	T	29293999	2	4	654	1	0	0	0	0	0	0	0	1	2211	1335	47	4		4	C2orf71	2	29293999	Silent	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09		29293999	213905374	4	56000										
EFEMP1	0	genome.wustl.edu	37	chr2	56097974	56097974	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tggcacagacctatcagatcGgatgctcatgtatttgtaga	10	8	2	3			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	2	56097974	56097974	G	A	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	nonsense	c.1201	p.R401*	1.000	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	126	0	0	105	65	38.24	-	-	-	A	56097974	G	A	56097974	4	1	654	1	0	0	0	0	0	1	0	0	4976	1124	39	1	288	1	EFEMP1	2	56097974	Nonsense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09	26803975	56097974	187101399	5	56001										
ANKRD44	0	genome.wustl.edu	37	chr2	197986120	197986120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	acaaagcaccatgagtggagGcagcagcaaaatgcaaaggg	13	8	0	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	2	197986120	197986120	G	A	SNP	ANKRD44	ENST00000328737	human	ensembl	69_37n	-1	known	missense	c.767	p.A256V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413	99	0	0	94	62	39.74	-	-	-	A	197986120	G	A	197986120	3	1	654	1	0	0	0	0	1	0	0	0	671	1203	42	4	2068	4	ANKRD44	2	197986120	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09	141888146	197986120	45213253	6	56002										
MUC4	0	genome.wustl.edu	37	chr3	195515766	195515766	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	gctgtctcctgaggagaggcActgggagaagttgggcttga	17	7	1	4			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	3	195515766	195515766	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.2685	p.S895	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	154	1	0.64	108	51	31.87	-	-	-	G	195515766	A	G	195515766	2	3	654	1	0	0	0	0	0	0	0	1	10050	156	6	5		5	MUC4	3	195515766	Silent	SNP	A	TCGA-C8-A1HO-01A-11D-A13L-09		195515766	2506664	7	56003										
PAPD4	0	genome.wustl.edu	37	chr5	78919122	78919122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tcttgacggtaaacggcaacGtttccattcaccccaccaag	7	14	2	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	5	78919122	78919122	G	A	SNP	PAPD4	ENST00000296783	human	ensembl	69_37n	1	known	missense	c.275	p.R92H	0.965	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329	67	0	0	56	43	43.43	-	-	-	A	78919122	G	A	78919122	3	1	654	1	0	0	0	0	1	0	0	0	11497	1145	40	1	285	1	PAPD4	5	78919122	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09		78919122	101996138	8	56004										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769108	140769108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tgcgcgtgttagtggacgacCgcaacgacaatgcgccacgg	14	12	0	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	5	140769108	140769108	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.1657	p.R553C	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	37	0	0	15	6	28.57	-	-	-	T	140769108	C	T	140769108	3	4	654	1	0	0	0	0	1	0	0	0	11638	652	23	1	1659	1	PCDHGB4	5	140769108	Missense_Mutation	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09	61849986	140769108	40146152	9	56005										
MAP3K5	0	genome.wustl.edu	37	chr6	136878950	136878950	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	ttccacagtgtgcacagcatCcctcccctgtttaaagacac	6	15	0	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	6	136878950	136878950	C	G	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	silent	c.4071	p.G1357	0.996	superfamily_SAM/pointed	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	82	0	0	22	50	69.44	-	-	-	G	136878950	C	G	136878950	2	3	654	1	0	0	0	0	0	0	0	1	9324	842	30	2		2	MAP3K5	6	136878950	Silent	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09		136878950	34236117	10	56006										
KCNU1	0	genome.wustl.edu	37	chr8	36644922	36644922	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	gaaatgttgctttcagcccaGacctttgtggggcaagtgtt	12	8	1	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	8	36644922	36644922	G	T	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.294	p.Q98H	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	83	0	0	285	41	12.58	-	-	-	T	36644922	G	T	36644922	3	4	654	1	0	0	0	0	1	0	0	0	8147	933	33	2	300	2	KCNU1	8	36644922	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09		36644922	109719100	11	56007										
ABCC8	0	genome.wustl.edu	37	chr11	17496468	17496468	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	ccctctgcaatctcacacacCaggacgaagagcagcatgaa	8	14	2	2			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	11	17496468	17496468	C	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	silent	c.255	p.L85	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	135	0	0	95	84	46.93	-	-	-	A	17496468	C	A	17496468	2	1	654	1	0	0	0	0	0	0	0	1	58	581	21	4		4	ABCC8	11	17496468	Silent	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09		17496468	117510048	12	56008										
OR4C46	0	genome.wustl.edu	37	chr11	51515904	51515904	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tggattcatctgcttgttaaActttgccctcctgctggtct	8	11	3	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	11	51515904	51515904	A	G	SNP	OR4C46	ENST00000328188	human	ensembl	69_37n	1	known	missense	c.623	p.N208S	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C46	HGNC	ENSG00000185926	115	0	0	102	77	42.78	-	-	-	G	51515904	A	G	51515904	3	3	654	1	0	0	0	0	1	0	0	0	11124	43	2	5	625	5	OR4C46	11	51515904	Missense_Mutation	SNP	A	TCGA-C8-A1HO-01A-11D-A13L-09	34019436	51515904	83490612	13	56009										
UCP2	0	genome.wustl.edu	37	chr11	73687705	73687705	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	cctgtcatgaggttggctttCaggagggcatccttgatgag	14	8	2	3			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	11	73687705	73687705	C	T	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	silent	c.615	p.L205	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	64	0	0	64	21	24.71	-	-	-	T	73687705	C	T	73687705	2	4	654	1	0	0	0	0	0	0	0	1	17028	813	29	2		2	UCP2	11	73687705	Silent	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09	22171801	73687705	61318811	14	56010										
BBS10	0	genome.wustl.edu	37	chr12	76741035	76741035	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tgggcggtacacagaaaaatCtttctgaagcacaagaccag	10	9	2	3			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	12	76741035	76741035	C	T	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.730	p.D244N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	57	0	0	38	25	39.68	-	-	-	T	76741035	C	T	76741035	3	4	654	1	0	0	0	0	1	0	0	0	1340	913	32	2	1445	2	BBS10	12	76741035	Missense_Mutation	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09		76741035	57110860	15	56011										
OR4K13	0	genome.wustl.edu	37	chr14	20502037	20502037	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tttttttaatggctgcttttAcctcttgatttcttaatgta	5	6	2	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	14	20502037	20502037	A	T	SNP	OR4K13	ENST00000315693	human	ensembl	69_37n	-1	known	missense	c.881	p.V294E	0.321	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K13	HGNC	ENSG00000176253	40	0	0	41	11	21.15	-	-	-	T	20502037	A	T	20502037	3	4	654	1	0	0	0	0	1	0	0	0	11141	391	14	5	35	5	OR4K13	14	20502037	Missense_Mutation	SNP	A	TCGA-C8-A1HO-01A-11D-A13L-09		20502037	86847503	16	56012										
KIF26A	0	genome.wustl.edu	37	chr14	104638201	104638202	+	Frame_Shift_Ins	INS	-	-	G													0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	cccaggcagcgcaggcccccINSggcgagccgccactgctgca							TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	14	104638201	104638202	-	G	INS	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	frame_shift_ins	c.1255_1256	p.R420fs	0.804:0.791	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	32	0	0	8	3	27.27	-	-	-	G	104638202	-	G	104638201	7	5	654	1	0	1	1	0	0	0	0	0	8346	643	23	0	1277	0	KIF26A	14	104638201	Frame_Shift_Ins	INS	-	TCGA-C8-A1HO-01A-11D-A13L-09	84136164	104638201	2711339	17	56013										
CDH1	0	genome.wustl.edu	37	chr16	68856122	68856122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	actggaccattcagtacaacGacccaagtgggtacctgagt	10	11	1	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	16	68856122	68856122	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.1930	p.D644N	0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0	33	29	46.77	-	-	-	A	68856122	G	A	68856122	3	1	654	1	0	0	0	0	1	0	0	0	3124	1058	37	1	1976	1	CDH1	16	68856122	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09		68856122	21498631	18	56014										
MAP2K4	0	genome.wustl.edu	37	chr17	12011212	12011212	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	ttccagaagaaattttaggcAaaatcactttagcagtaagt	7	6	1	2			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	17	12011212	12011212	A	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	nonsense	c.652	p.K218*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	111	0	0	24	64	72.73	-	-	-	T	12011212	A	T	12011212	4	4	654	1	0	0	0	0	0	1	0	0	9310	131	5	5	637	5	MAP2K4	17	12011212	Nonsense_Mutation	SNP	A	TCGA-C8-A1HO-01A-11D-A13L-09		12011212	69183998	19	56015										
NARF	0	genome.wustl.edu	37	chr17	80422247	80422247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	gctgtatgactgcagaggaaGgagtccaactttcccagcaa	11	10	0	2			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	17	80422247	80422247	G	A	SNP	NARF	ENST00000309794	human	ensembl	69_37n	1	known	missense	c.193	p.G65R	0.968	superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562	86	0	0	92	162	63.78	-	-	-	A	80422247	G	A	80422247	3	1	654	1	0	0	0	0	1	0	0	0	10239	1001	35	4	203	4	NARF	17	80422247	Missense_Mutation	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09	68411035	80422247	772963	20	56016										
DSC1	0	genome.wustl.edu	37	chr18	28742499	28742499	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	tttggttgttactcaccaggAgagagaaaaggagctgctta	12	6	1	2			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	18	28742499	28742499	A	G	SNP	DSC1	ENST00000257198	human	ensembl	69_37n	-1	known	missense	c.59	p.L20P	0.999	NULL	pfam_Cadherin,pfam_Cadherin_pro_dom,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmocollin,prints_Cadherin,prints_Desmo_cadherin	-	no_errors	DSC1	HGNC	ENSG00000134765	59	0	0	38	30	43.48	-	-	-	G	28742499	A	G	28742499	3	3	654	1	0	0	0	0	1	0	0	0	4800	304	11	5	2729	5	DSC1	18	28742499	Missense_Mutation	SNP	A	TCGA-C8-A1HO-01A-11D-A13L-09		28742499	49334749	21	56017										
PEPD	0	genome.wustl.edu	37	chr19	33991853	33991853	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	cggctacccacctcatctacGtactggacgtcgtccacggc	9	17	2	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	19	33991853	33991853	G	A	SNP	PEPD	ENST00000244137	human	ensembl	69_37n	-1	known	silent	c.384	p.Y128	0.392	pfam_Aminopep_P_N	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299	88	0	0	40	27	40.3	-	-	-	A	33991853	G	A	33991853	2	1	654	1	0	0	0	0	0	0	0	1	11801	1140	40	1		1	PEPD	19	33991853	Silent	SNP	G	TCGA-C8-A1HO-01A-11D-A13L-09		33991853	25137130	22	56018										
MAP4K1	0	genome.wustl.edu	37	chr19	39096100	39096100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	agaagtgggggcttgtcaagCtcccgggagggtgggttcca	18	8	1	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	19	39096100	39096100	C	T	SNP	MAP4K1	ENST00000591921	human	ensembl	69_37n	-1	novel	missense	c.506	p.S169N	0.053	NULL	pfam_Citron,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K1	HGNC	ENSG00000104814	38	0	0	18	13	41.94	-	-	-	T	39096100	C	T	39096100	3	4	654	1	0	0	0	0	1	0	0	0	9330	796	28	4	1224	4	MAP4K1	19	39096100	Missense_Mutation	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09	5104247	39096100	20032883	23	56019										
SSTR4	0	genome.wustl.edu	37	chr20	23016243	23016243	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	gcggtggcggggcccggggaCgcgcgggcggcgggcatggt	25	11	0	0			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	20	23016243	23016243	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.123	p.D41	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	34	0	0	13	7	35	-	-	-	T	23016243	C	T	23016243	2	4	654	1	0	0	0	0	0	0	0	1	15291	535	19	1		1	SSTR4	20	23016243	Silent	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09		23016243	40009277	24	56020										
IRS4	0	genome.wustl.edu	37	chrX	107978002	107978002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	2	0.853300625210231	1.17142857142857	0	1.36666666666667	0.4	0.991179622791967	0	acctcgggatccctgtccctCgcctgaacactggtttcctc	8	17	0	1			TCGA-C8-A1HO-01A-11D-A13L-09	TCGA-C8-A1HO-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6fb921c-78fe-4852-b2a5-edd5a02ae923	dd0c6efe-1e1d-4031-aaaa-6823475036af	X	107978002	107978002	C	T	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.1573	p.E525K	0.071	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	136	1	0.73	24	61	71.76	-	-	-	T	107978002	C	T	107978002	3	4	654	1	0	0	0	0	1	0	0	0	7896	893	31	1	2204	1	IRS4	23	107978002	Missense_Mutation	SNP	C	TCGA-C8-A1HO-01A-11D-A13L-09		107978002	47292558	25	56021										
PTCHD2	0	genome.wustl.edu	37	chr1	11579485	11579485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ttgccgctcccgagcaggttGgaggcagccctgcccagggc	15	15	0	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	11579485	11579485	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	1	known	missense	c.1963	p.G655R	0.035	pfam_Patched	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	23	0	0	24	13	35.14	-	-	-	A	11579485	G	A	11579485	3	1	655	1	0	0	0	0	1	0	0	0	12813	1349	47	4	1989	4	PTCHD2	1	11579485	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		11579485	237671136	1	56022										
PHC2	0	genome.wustl.edu	37	chr1	33795806	33795806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cacccgtttggtgcatcccaCgttgtaccttcagggacagg	11	13	1	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	33795806	33795806	C	A	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.2014	p.V672L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	74	0	0	39	26	40	-	-	-	A	33795806	C	A	33795806	3	1	655	1	0	0	0	0	1	0	0	0	11891	536	19	3	577	3	PHC2	1	33795806	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	22216321	33795806	215454815	2	56023										
ASB17	0	genome.wustl.edu	37	chr1	76397787	76397787	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gtaatctgtgagtagtgcgtCaaaaccatccaagtccacat	8	10	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	76397787	76397787	C	T	SNP	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	missense	c.190	p.D64N	1.000	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	73	0	0	47	25	34.72	-	-	-	T	76397787	C	T	76397787	3	4	655	1	0	0	0	0	1	0	0	0	1025	826	29	2	709	2	ASB17	1	76397787	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	42601981	76397787	172852834	3	56024										
CSF1	0	genome.wustl.edu	37	chr1	110466502	110466502	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cagcaacccctccaccctctCtgctcagccacagctttcca	4	21	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	110466502	110466502	C	G	SNP	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	missense	c.1259	p.S420C	0.001	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	21	0	0	10	16	61.54	-	-	-	G	110466502	C	G	110466502	3	3	655	1	0	0	0	0	1	0	0	0	3963	913	32	2	1281	2	CSF1	1	110466502	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	34068715	110466502	138784119	4	56025										
MRPL9	0	genome.wustl.edu	37	chr1	151735549	151735549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccagcttatagacgcgatgtCgccggtgcaggcgcggcttc	14	13	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	151735549	151735549	C	T	SNP	MRPL9	ENST00000368830	human	ensembl	69_37n	-1	known	missense	c.227	p.R76Q	0.998	NULL	pfam_Ribosomal_L9_N,superfamily_Ribosomal_L9/RNase_H1_N	-	no_errors	MRPL9	HGNC	ENSG00000143436	23	0	0	16	11	40.74	-	-	-	T	151735549	C	T	151735549	3	4	655	1	0	0	0	0	1	0	0	0	9892	884	31	1	600	1	MRPL9	1	151735549	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	41269047	151735549	97515072	5	56026										
FASLG	0	genome.wustl.edu	37	chr1	172634780	172634780	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	aggcaagtccaactcaaggtCcatgcctctggaatgggaag	12	10	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	172634780	172634780	C	A	SNP	FASLG	ENST00000367721	human	ensembl	69_37n	1	known	missense	c.470	p.S157Y	0.597	superfamily_Tumour_necrosis_fac-like,smart_TNF,prints_Fas_ligand,pfscan_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,prints_Fas_ligand,prints_TNF_a/b/c,prints_TNF_C,pfscan_TNF	-	no_errors	FASLG	HGNC	ENSG00000117560	56	0	0	36	26	41.94	-	-	-	A	172634780	C	A	172634780	3	1	655	1	0	0	0	0	1	0	0	0	5728	855	30	2	484	2	FASLG	1	172634780	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	20899231	172634780	76615841	6	56027										
PAPPA2	0	genome.wustl.edu	37	chr1	176659458	176659458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gagacctctgtgccgacaccGcccccactcccaagagtgag	10	17	1	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	176659458	176659458	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.2323	p.A775T	0.999	pfam_Peptidase_M43	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	35	0	0	21	12	36.36	-	-	-	A	176659458	G	A	176659458	3	1	655	1	0	0	0	0	1	0	0	0	11506	1087	38	1	2337	1	PAPPA2	1	176659458	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	4024678	176659458	72591163	7	56028										
NUAK2	0	genome.wustl.edu	37	chr1	205280937	205280937	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctttgattttgtccttccggAttgacttgatggccacctgg	10	10	0	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	205280937	205280937	A	G	SNP	NUAK2	ENST00000367157	human	ensembl	69_37n	-1	known	missense	c.248	p.I83T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK2	HGNC	ENSG00000163545	117	0	0	126	51	28.81	-	-	-	G	205280937	A	G	205280937	3	3	655	1	0	0	0	0	1	0	0	0	10786	333	12	5	1662	5	NUAK2	1	205280937	Missense_Mutation	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09	28621479	205280937	43969684	8	56029										
GALNT2	0	genome.wustl.edu	37	chr1	230381835	230381835	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	actcgggttgtgtcacccatCatcgatgtcattaatatgga	9	9	3	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	1	230381835	230381835	C	A	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	1	known	silent	c.756	p.I252	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	101	0	0	96	31	24.41	-	-	-	A	230381835	C	A	230381835	2	1	655	1	0	0	0	0	0	0	0	1	6263	816	29	2		2	GALNT2	1	230381835	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	25100898	230381835	18868786	9	56030										
PROM2	0	genome.wustl.edu	37	chr2	95945629	95945629	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gtgctgtgctccgtggtcctAttcgtggtgctctgcaacct	12	12	1	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	2	95945629	95945629	A	G	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	silent	c.1311	p.L437	0.616	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	51	0	0	43	24	35.82	-	-	-	G	95945629	A	G	95945629	2	3	655	1	0	0	0	0	0	0	0	1	12637	436	16	5		5	PROM2	2	95945629	Silent	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09		95945629	147253744	10	56031										
IL1RN	0	genome.wustl.edu	37	chr2	113888714	113888714	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cctgtgtcaagtctggtgatGagaccagactccagctggag	13	10	2	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	2	113888714	113888714	G	A	SNP	IL1RN	ENST00000259206	human	ensembl	69_37n	1	known	missense	c.307	p.E103K	0.001	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_IL_rcpt_IL1RA,prints_Interleukin_1	-	no_errors	IL1RN	HGNC	ENSG00000136689	44	0	0	28	19	40.43	-	-	-	A	113888714	G	A	113888714	3	1	655	1	0	0	0	0	1	0	0	0	7719	1291	45	2	389	2	IL1RN	2	113888714	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	17943085	113888714	129310659	11	56032										
TTN	0	genome.wustl.edu	37	chr2	179563606	179563606	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctctttgggctttgcaacaaCttttttggcatctttcttca	6	10	4	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	2	179563606	179563606	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.26986	p.V8996L	0.368	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	168	0	0	110	64	36.78	-	-	-	G	179563606	C	G	179563606	3	3	655	1	0	0	0	0	1	0	0	0	16832	565	20	4	73815	4	TTN	2	179563606	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	65674892	179563606	63635767	12	56033										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	24	0	0	20	8	28.57	-	-	-	C	198266834	T	C	198266834	3	2	655	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-C8-A26V-01A-11D-A16D-09	18703228	198266834	44932539	13	56034										
ZFYVE20	0	genome.wustl.edu	37	chr3	15115866	15115866	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	acactctggtgggttgagttGagctaagtgaaggggtcttg	16	5	2	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	3	15115866	15115866	G	C	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	nonsense	c.1778	p.S593*	0.001	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	57	0	0	11	14	56	-	-	-	C	15115866	G	C	15115866	4	2	655	1	0	0	0	0	0	1	0	0	17762	1294	45	2	580	2	ZFYVE20	3	15115866	Nonsense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		15115866	182906564	14	56035										
POU1F1	0	genome.wustl.edu	37	chr3	87309075	87309075	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	caagatgttccttagaaataGaaaataaactctgattcaga	6	6	2	5			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	3	87309075	87309075	G	C	SNP	POU1F1	ENST00000344265	human	ensembl	69_37n	-1	known	missense	c.923	p.S308C	0.697	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU1F1	HGNC	ENSG00000064835	75	0	0	49	36	42.35	-	-	-	C	87309075	G	C	87309075	3	2	655	1	0	0	0	0	1	0	0	0	12342	942	33	2	34	2	POU1F1	3	87309075	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	72193209	87309075	110713355	15	56036										
TRIM42	0	genome.wustl.edu	37	chr3	140409844	140409844	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tccagcagaagacgtggactCttttgagatggaattctatg	11	7	2	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	3	140409844	140409844	C	G	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.1895	p.S632C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	80	0	0	52	22	29.73	-	-	-	G	140409844	C	G	140409844	3	3	655	1	0	0	0	0	1	0	0	0	16613	913	32	2	1909	2	TRIM42	3	140409844	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	53100769	140409844	57612586	16	56037										
LIPH	0	genome.wustl.edu	37	chr3	185245369	185245369	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	aataaagggcctgcagggtcGaggcctggaaggaaaacaga	15	7	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	3	185245369	185245369	G	C	SNP	LIPH	ENST00000296252	human	ensembl	69_37n	-1	known	silent	c.531	p.L177	0.062	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPH	HGNC	ENSG00000163898	59	0	0	75	34	30.91	-	-	-	C	185245369	G	C	185245369	2	2	655	1	0	0	0	0	0	0	0	1	8880	1045	37	3		3	LIPH	3	185245369	Silent	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	44835525	185245369	12777061	17	56038										
DRD5	0	genome.wustl.edu	37	chr4	9784305	9784305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	acgtgaatgcagagaactgtGactccagcctgaatcgaacc	10	11	0	4			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	4	9784305	9784305	G	A	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	1	known	missense	c.652	p.D218N	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	29	0	0	18	13	41.94	-	-	-	A	9784305	G	A	9784305	3	1	655	1	0	0	0	0	1	0	0	0	4795	1290	45	2	654	2	DRD5	4	9784305	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		9784305	181369971	18	56039										
SEPT8	0	genome.wustl.edu	37	chr5	132101177	132101177	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tcggggaggctgtcgaaaccCacatggccgcccagggagag	16	12	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	5	132101177	132101177	C	G	SNP	SEPT8	ENST00000378719	human	ensembl	69_37n	-1	known	silent	c.75	p.V25	0.994	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402	17	0	0	19	7	26.92	-	-	-	G	132101177	C	G	132101177	2	3	655	1	0	0	0	0	0	0	0	1	14158	581	21	4		4	SEPT8	5	132101177	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		132101177	48814083	19	56040										
SEC24A	0	genome.wustl.edu	37	chr5	134032905	134032905	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gctgttgacttattccttctCagtggacagtattctgattt	8	8	2	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	5	134032905	134032905	C	T	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	silent	c.2076	p.L692	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	202	0	0	132	67	33.67	-	-	-	T	134032905	C	T	134032905	2	4	655	1	0	0	0	0	0	0	0	1	14082	813	29	2		2	SEC24A	5	134032905	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	1931728	134032905	46882355	20	56041										
GABRA1	0	genome.wustl.edu	37	chr5	161302575	161302575	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tttcccttaaggctgacagtGagagctgaatgtccgatgca	11	9	0	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	5	161302575	161302575	G	A	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	silent	c.486	p.V162	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	103	0	0	84	27	24.32	-	-	-	A	161302575	G	A	161302575	2	1	655	1	0	0	0	0	0	0	0	1	6209	1277	45	2		2	GABRA1	5	161302575	Silent	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	27269670	161302575	19612685	21	56042										
FAM193B	0	genome.wustl.edu	37	chr5	176951919	176951919	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggctgctgctctgaggagccActgaggtttgaggggggtag	19	7	1	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	5	176951919	176951919	A	C	SNP	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	missense	c.1464	p.S488R	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	33	0	0	15	14	48.28	-	-	-	C	176951919	A	C	176951919	3	2	655	1	0	0	0	0	1	0	0	0	5567	156	6	5	917	5	FAM193B	5	176951919	Missense_Mutation	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09	15649344	176951919	3963341	22	56043										
TUBB	0	genome.wustl.edu	37	chr6	30691484	30691484	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gatatctgcttccgcactctGaagctgaccacaccaaccta	6	15	2	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	30691484	30691484	G	C	SNP	TUBB	ENST00000327892	human	ensembl	69_37n	1	known	silent	c.645	p.L215	0.922	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB	HGNC	ENSG00000196230	18	0	0	11	10	47.62	-	-	-	C	30691484	G	C	30691484	2	2	655	1	0	0	0	0	0	0	0	1	16849	1277	45	2		2	TUBB	6	30691484	Silent	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		30691484	140423583	23	56044										
KIF6	0	genome.wustl.edu	37	chr6	39607395	39607395	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	aagtttcataccttttgtaaCtgttcaaaaatgtatgacag	6	6	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	39607395	39607395	C	A	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.390	p.Q130H	0.996	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	69	0	0	38	16	29.63	-	-	-	A	39607395	C	A	39607395	3	1	655	1	0	0	0	0	1	0	0	0	8360	564	20	4	2134	4	KIF6	6	39607395	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	8915911	39607395	131507672	24	56045										
GRIK2	0	genome.wustl.edu	37	chr6	102069879	102069879	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggagctgaggaacttgcattCagatttgctgtgaacacaat	11	7	1	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	102069879	102069879	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	silent	c.171	p.F57	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	53	0	0	26	19	42.22	-	-	-	T	102069879	C	T	102069879	2	4	655	1	0	0	0	0	0	0	0	1	6825	825	29	2		2	GRIK2	6	102069879	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	62462484	102069879	69045188	25	56046										
AKD1	0	genome.wustl.edu	37	chr6	109818699	109818699	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctggagtttttctttgttctCacaaatatatatacgattat	5	6	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	109818699	109818699	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.5284	p.E1762K	1.000	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	59	0	0	30	14	31.82	-	-	-	T	109818699	C	T	109818699	3	4	655	1	0	0	0	0	1	0	0	0	460	835	29	2	467	2	AKD1	6	109818699	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	7748820	109818699	61296368	26	56047										
LAMA4	0	genome.wustl.edu	37	chr6	112499344	112499344	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ttggattttatccctcatatCatgggcttgctctaccagct	7	11	3	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	112499344	112499344	C	G	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	missense	c.1168	p.D390H	0.005	pfam_Laminin_I	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	132	0	0	81	53	39.55	-	-	-	G	112499344	C	G	112499344	3	3	655	1	0	0	0	0	1	0	0	0	8662	826	29	2	4423	2	LAMA4	6	112499344	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	2680645	112499344	58615723	27	56048										
LATS1	0	genome.wustl.edu	37	chr6	150023155	150023155	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ttagataaattcctaagggaTtcccgaatttcttgtaacat	6	7	1	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	6	150023155	150023155	T	A	SNP	LATS1	ENST00000253339	human	ensembl	69_37n	-1	known	missense	c.108	p.E36D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	LATS1	HGNC	ENSG00000131023	111	0	0	57	35	38.04	-	-	-	A	150023155	T	A	150023155	3	1	655	1	0	0	0	0	1	0	0	0	8700	1490	52	5	3312	5	LATS1	6	150023155	Missense_Mutation	SNP	T	TCGA-C8-A26V-01A-11D-A16D-09	37523811	150023155	21091912	28	56049										
TNRC18	0	genome.wustl.edu	37	chr7	5415756	5415756	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gccgcaggaagtgctgctgtGagaagagctgcagctgctgg	17	9	0	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	7	5415756	5415756	G	T	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	nonsense	c.2708	p.S903*	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	8	0	0	12	6	33.33	-	-	-	T	5415756	G	T	5415756	4	4	655	1	0	0	0	0	0	1	0	0	16434	1294	45	2	6286	2	TNRC18	7	5415756	Nonsense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		5415756	153722907	29	56050										
ICA1	0	genome.wustl.edu	37	chr7	8153625	8153625	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tttgagagtgggtcgaggtcAgcgaagaggctgaaccaggc	17	7	1	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	7	8153625	8153625	A	G	SNP	ICA1	ENST00000422063	human	ensembl	69_37n	-1	known	silent	c.1467	p.A489	0.997	pfam_Islet_autoAg_Ica1_C	pfam_Arfaptin_homology_dom,pfam_Islet_autoAg_Ica1_C,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	66	0	0	42	22	34.38	-	-	-	G	8153625	A	G	8153625	2	3	655	1	0	0	0	0	0	0	0	1	7531	175	7	5		5	ICA1	7	8153625	Silent	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09	2737869	8153625	150985038	30	56051										
NFE2L3	0	genome.wustl.edu	37	chr7	26224267	26224267	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gtcaggatgtgaatcttcatGaggccatcttgctttgtccc	10	10	4	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	7	26224267	26224267	G	A	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.949	p.E317K	1.000	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	54	0	0	30	17	36.17	-	-	-	A	26224267	G	A	26224267	3	1	655	1	0	0	0	0	1	0	0	0	10441	1291	45	2	963	2	NFE2L3	7	26224267	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	18070642	26224267	132914396	31	56052										
IMMP2L	0	genome.wustl.edu	37	chr7	111127384	111127384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cagatgactggctccccccaGgattcaaagaaggctagaaa	10	11	1	4			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	7	111127384	111127384	G	A	SNP	IMMP2L	ENST00000331762	human	ensembl	69_37n	-1	known	missense	c.149	p.P50L	1.000	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,tigrfam_Pept_S26A_signal_pept_1	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Pept_S26A_signal_pept_1,tigrfam_Pept_S26A_signal_pept_1	-	no_errors	IMMP2L	HGNC	ENSG00000184903	48	0	0	27	14	34.15	-	-	-	A	111127384	G	A	111127384	3	1	655	1	0	0	0	0	1	0	0	0	7771	1000	35	4	394	4	IMMP2L	7	111127384	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	84903117	111127384	48011279	32	56053										
LUC7L2	0	genome.wustl.edu	37	chr7	139102409	139102409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccgctccagcagccgtagccGcagccgtagccaccagagaa	11	17	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	7	139102409	139102409	G	A	SNP	LUC7L2	ENST00000541515	human	ensembl	69_37n	1	known	missense	c.1133	p.R378H	0.999	NULL	pfam_LUC7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000146963	43	0	0	28	23	45.1	-	-	-	A	139102409	G	A	139102409	3	1	655	1	0	0	0	0	1	0	0	0	9149	1087	38	1	969	1	LUC7L2	7	139102409	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	27975025	139102409	20036254	33	56054										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37734696	37734696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggactgaaagtctccgggacGaagcagcactttttctggct	12	10	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	8	37734696	37734696	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.745	p.R249C	0.087	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	56	0	0	52	36	40.91	-	-	-	A	37734696	G	A	37734696	3	1	655	1	0	0	0	0	1	0	0	0	12976	1058	37	1	3126	1	RAB11FIP1	8	37734696	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		37734696	108629326	34	56055										
YWHAZ	0	genome.wustl.edu	37	chr8	101961020	101961020	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cctcattggataattcagctCcttgctcagttacagacttc	6	12	3	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	8	101961020	101961020	C	G	SNP	YWHAZ	ENST00000353245	human	ensembl	69_37n	-1	known	missense	c.98	p.G33A	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAZ	HGNC	ENSG00000164924	20	0	0	12	9	42.86	-	-	-	G	101961020	C	G	101961020	3	3	655	1	0	0	0	0	1	0	0	0	17603	855	30	2	659	2	YWHAZ	8	101961020	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	64226324	101961020	44403002	35	56056										
KCNV1	0	genome.wustl.edu	37	chr8	110984663	110984663	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctatgatgtttggcacctttCttaggaagcgacacctgtcc	9	11	1	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	8	110984663	110984663	C	A	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.815	p.R272I	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	31	0	0	19	17	47.22	-	-	-	A	110984663	C	A	110984663	3	1	655	1	0	0	0	0	1	0	0	0	8148	913	32	2	695	2	KCNV1	8	110984663	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	9023643	110984663	35379359	36	56057										
CDC14B	0	genome.wustl.edu	37	chr9	99271985	99271985	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tgcttttccttgaagcagatCtggtggttcttttagtaatg	10	6	2	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	9	99271985	99271985	C	G	SNP	CDC14B	ENST00000375241	human	ensembl	69_37n	-1	known	missense	c.1430	p.R477T	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377	117	0	0	63	23	26.74	-	-	-	G	99271985	C	G	99271985	3	3	655	1	0	0	0	0	1	0	0	0	3086	913	32	2	74	2	CDC14B	9	99271985	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		99271985	41941446	37	56058										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0	19	13	40.62	-	-	-	-	8111434	CA	-	8111433	8	5	655	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-C8-A26V-01A-11D-A16D-09		8111433	127423314	38	56059										
GBF1	0	genome.wustl.edu	37	chr10	104139146	104139146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gtggccagaagattgaagctGattctcgcaccctctgggcc	12	12	2	4			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	10	104139146	104139146	G	C	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.4597	p.D1533H	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	24	0	0	7	18	72	-	-	-	C	104139146	G	C	104139146	3	2	655	1	0	0	0	0	1	0	0	0	6321	1290	45	2	4727	2	GBF1	10	104139146	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	96027713	104139146	31395601	39	56060										
ACTR1A	0	genome.wustl.edu	37	chr10	104250366	104250366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	aaccagctttaatcacaccgGatccctgaggaaagaggaga	10	10	1	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	10	104250366	104250366	G	C	SNP	ACTR1A	ENST00000369905	human	ensembl	69_37n	-1	known	missense	c.53	p.S18C	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1A	HGNC	ENSG00000138107	57	0	0	11	27	71.05	-	-	-	C	104250366	G	C	104250366	3	2	655	1	0	0	0	0	1	0	0	0	209	1174	41	2	1117	2	ACTR1A	10	104250366	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	111220	104250366	31284381	40	56061										
OR52K2	0	genome.wustl.edu	37	chr11	4471266	4471266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cagttctactgcttgcctctCaggaggcccgctacaaggca	10	14	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	11	4471266	4471266	C	G	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	missense	c.697	p.Q233E	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	147	0	0	119	81	40.5	-	-	-	G	4471266	C	G	4471266	3	3	655	1	0	0	0	0	1	0	0	0	11197	827	29	2	699	2	OR52K2	11	4471266	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		4471266	130535250	41	56062										
PTHLH	0	genome.wustl.edu	37	chr12	28116284	28116284	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccagagaagcctgttaccgtGaatcgagctccagcgacgtt	11	12	0	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	12	28116284	28116284	G	A	SNP	PTHLH	ENST00000354417	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.138	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	64	0	0	34	32	48.48	-	-	-	A	28116284	G	A	28116284	3	1	655	1	0	0	0	0	1	0	0	0	12842	1294	45	2	24	2	PTHLH	12	28116284	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		28116284	105735611	42	56063										
KRT84	0	genome.wustl.edu	37	chr12	52779047	52779047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	agccaatgccactgccagctCcaaagcccagaccaacacag	7	17	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	12	52779047	52779047	C	G	SNP	KRT84	ENST00000257951	human	ensembl	69_37n	-1	known	missense	c.323	p.G108A	0.843	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849	81	0	0	71	36	33.64	-	-	-	G	52779047	C	G	52779047	3	3	655	1	0	0	0	0	1	0	0	0	8551	855	30	2	1515	2	KRT84	12	52779047	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	24662763	52779047	81072848	43	56064										
SP7	0	genome.wustl.edu	37	chr12	53722734	53722734	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccaccacctagccagttgccTccagggtgcatatcccacca	7	18	0	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	12	53722734	53722734	T	C	SNP	SP7	ENST00000303846	human	ensembl	69_37n	-1	known	silent	c.492	p.G164	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374	40	0	0	31	12	27.91	-	-	-	C	53722734	T	C	53722734	2	2	655	1	0	0	0	0	0	0	0	1	15058	1538	54	5		5	SP7	12	53722734	Silent	SNP	T	TCGA-C8-A26V-01A-11D-A16D-09	943687	53722734	80129161	44	56065										
CKAP2	0	genome.wustl.edu	37	chr13	53042449	53042449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gacacacgattgtagatattCtaacaatgaagagtcaagaa	8	6	2	4			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	13	53042449	53042449	C	G	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	1	known	missense	c.1516	p.L506V	0.996	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	108	0	0	26	32	55.17	-	-	-	G	53042449	C	G	53042449	3	3	655	1	0	0	0	0	1	0	0	0	3472	912	32	2	1542	2	CKAP2	13	53042449	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		53042449	62127429	45	56066										
RALGAPA1	0	genome.wustl.edu	37	chr14	36096648	36096648	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tggtacagtttctctaaatcTtttaaactggagagaaagtc	8	6	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	14	36096648	36096648	T	G	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	silent	c.5128	p.R1710	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	55	0	0	34	27	44.26	-	-	-	G	36096648	T	G	36096648	2	3	655	1	0	0	0	0	0	0	0	1	13096	1617	56	5		5	RALGAPA1	14	36096648	Silent	SNP	T	TCGA-C8-A26V-01A-11D-A16D-09		36096648	71252892	46	56067										
MPI	0	genome.wustl.edu	37	chr15	75185065	75185065	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccgatgccaaccacaagccaGagatggccattgccctcacc	8	17	1	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	15	75185065	75185065	G	C	SNP	MPI	ENST00000352410	human	ensembl	69_37n	1	known	missense	c.409	p.E137Q	1.000	pfam_Man6P_Isoase-1,superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase,prints_Mannose-6-P_Isomerase,tigrfam_Man6P_Isoase-1	pfam_Man6P_Isoase-1,superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase,prints_Mannose-6-P_Isomerase,tigrfam_Man6P_Isoase-1	-	no_errors	MPI	HGNC	ENSG00000178802	31	0	0	17	13	43.33	-	-	-	C	75185065	G	C	75185065	3	2	655	1	0	0	0	0	1	0	0	0	9801	943	33	2	423	2	MPI	15	75185065	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		75185065	27346327	47	56068										
TM2D3	0	genome.wustl.edu	37	chr15	102190296	102190296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tgttgtgcagtctatacagtCtgcaggaagcctgctacaca	10	10	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	15	102190296	102190296	C	G	SNP	TM2D3	ENST00000333202	human	ensembl	69_37n	-1	known	missense	c.238	p.D80H	1.000	NULL	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277	34	0	0	19	25	56.82	-	-	-	G	102190296	C	G	102190296	3	3	655	1	0	0	0	0	1	0	0	0	16060	913	32	2	521	2	TM2D3	15	102190296	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	27005231	102190296	341096	48	56069										
CREBBP	0	genome.wustl.edu	37	chr16	3777933	3777933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggggtgagacgtggtgtggcGaaggctggggctgtatccgt	21	6	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	16	3777933	3777933	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.7115	p.S2372L	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	56	0	0	39	33	45.83	-	-	-	A	3777933	G	A	3777933	3	1	655	1	0	0	0	0	1	0	0	0	3891	1059	37	1	217	1	CREBBP	16	3777933	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		3777933	86576820	49	56070										
FHOD1	0	genome.wustl.edu	37	chr16	67265711	67265711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tcttcctccgtgggcatcatGgtcagtagcttctgaggatg	12	10	4	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	16	67265711	67265711	G	A	SNP	FHOD1	ENST00000567509	human	ensembl	69_37n	-1	known	missense	c.292	p.H98Y	0.998	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd	-	no_start_codon	FHOD1	HGNC	ENSG00000135723	62	0	0	41	5	10.87	-	-	-	A	67265711	G	A	67265711	3	1	655	1	0	0	0	0	1	0	0	0	5928	1335	47	4	1312	4	FHOD1	16	67265711	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	63487778	67265711	23089042	50	56071										
C16orf86	0	genome.wustl.edu	37	chr16	67701972	67701972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cgctgtggccagcatggtgtCtgcacccttagagacattga	12	11	1	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	16	67701972	67701972	C	T	SNP	C16orf86	ENST00000403458	human	ensembl	69_37n	1	known	missense	c.524	p.S175F	0.001	NULL	NULL	-	no_errors	C16orf86	HGNC	ENSG00000159761	22	0	0	7	12	63.16	-	-	-	T	67701972	C	T	67701972	3	4	655	1	0	0	0	0	1	0	0	0	1852	913	32	2	534	2	C16orf86	16	67701972	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	436261	67701972	22652781	51	56072										
TP53	0	genome.wustl.edu	37	chr17	7577586	7577586	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tacacatgtagttgtagtggAtggtggtacagtcagagcca	13	6	1	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	17	7577586	7577586	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.695	p.I232S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	52	0	0	12	21	63.64	-	-	-	C	7577586	A	C	7577586	3	2	655	1	0	0	0	0	1	0	0	0	16477	333	12	5	595	5	TP53	17	7577586	Missense_Mutation	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09		7577586	73617624	52	56073										
FLCN	0	genome.wustl.edu	37	chr17	17122397	17122397	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gctgccagctcccacagcctGagagagaggaggactctgcc	13	14	1	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	17	17122397	17122397	G	C	SNP	FLCN	ENST00000285071	human	ensembl	69_37n	-1	known	nonsense	c.998	p.S333*	0.007	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803	54	0	0	8	14	60.87	-	-	-	C	17122397	G	C	17122397	4	2	655	1	0	0	0	0	0	1	0	0	5967	1294	45	2	765	2	FLCN	17	17122397	Nonsense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	9544811	17122397	64072813	53	56074										
CYP4F22	0	genome.wustl.edu	37	chr19	15636257	15636257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cctgctcttcttcctgttccGcctgctgctgcggttcctga	9	16	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	19	15636257	15636257	G	A	SNP	CYP4F22	ENST00000269703	human	ensembl	69_37n	1	known	missense	c.110	p.R37H	0.960	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954	75	0	0	58	32	35.56	-	-	-	A	15636257	G	A	15636257	3	1	655	1	0	0	0	0	1	0	0	0	4220	1087	38	1	112	1	CYP4F22	19	15636257	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		15636257	43492726	54	56075										
GRIK5	0	genome.wustl.edu	37	chr19	42558054	42558054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ccctttgctgttgaactcgaCccgcccggtcagcccatcat	8	17	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	19	42558054	42558054	C	A	SNP	GRIK5	ENST00000301218	human	ensembl	69_37n	-1	known	missense	c.1084	p.V362F	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737	48	0	0	29	23	44.23	-	-	-	A	42558054	C	A	42558054	3	1	655	1	0	0	0	0	1	0	0	0	6828	507	18	4	1902	4	GRIK5	19	42558054	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	26921797	42558054	16570929	55	56076										
ZNF575	0	genome.wustl.edu	37	chr19	44038639	44038639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	tagtcccactggcaaggaacCagtgaccaaagaaggtgaga	12	9	0	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	19	44038639	44038639	C	G	SNP	ZNF575	ENST00000458714	human	ensembl	69_37n	1	known	missense	c.362	p.P121R	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF575	HGNC	ENSG00000176472	22	0	0	10	8	44.44	-	-	-	G	44038639	C	G	44038639	3	3	655	1	0	0	0	0	1	0	0	0	18103	594	21	4	67	4	ZNF575	19	44038639	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	1480585	44038639	15090344	56	56077										
ALDH16A1	0	genome.wustl.edu	37	chr19	49964940	49964940	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctcctcctggcccagctggcGggggagctgggccccttccc	14	18	0	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	19	49964940	49964940	G	C	SNP	ALDH16A1	ENST00000293350	human	ensembl	69_37n	1	known	silent	c.642	p.A214	0.976	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618	8	0	0	4	6	60	-	-	-	C	49964940	G	C	49964940	2	2	655	1	0	0	0	0	0	0	0	1	488	1103	39	3		3	ALDH16A1	19	49964940	Silent	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	5926301	49964940	9164043	57	56078										
TGM3	0	genome.wustl.edu	37	chr20	2297758	2297758	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	gtgcttgctgggaattggagCggcacttacaccggtggccg	16	10	0	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	20	2297758	2297758	C	T	SNP	TGM3	ENST00000381458	human	ensembl	69_37n	1	known	silent	c.714	p.S238	0.001	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780	49	0	0	31	14	30.43	-	-	-	T	2297758	C	T	2297758	2	4	655	1	0	0	0	0	0	0	0	1	15926	767	27	1		1	TGM3	20	2297758	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		2297758	60727762	58	56079										
PTPRA	0	genome.wustl.edu	37	chr20	2985705	2985705	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ttctcttaacctttcaggctCtccctgcatgtcctatccag	5	15	3	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	20	2985705	2985705	C	G	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.775	p.L259V	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	123	1	0.81	71	44	38.26	-	-	-	G	2985705	C	G	2985705	3	3	655	1	0	0	0	0	1	0	0	0	12878	913	32	2	768	2	PTPRA	20	2985705	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	687947	2985705	60039815	59	56080										
EDN3	0	genome.wustl.edu	37	chr20	57876517	57876517	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggcaggcgcggcgtgtcccaGgcccccactgcagccagatc	14	17	0	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	20	57876517	57876517	G	A	SNP	EDN3	ENST00000337938	human	ensembl	69_37n	1	known	silent	c.105	p.Q35	0.002	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205	14	0	0	8	6	42.86	-	-	-	A	57876517	G	A	57876517	2	1	655	1	0	0	0	0	0	0	0	1	4953	991	35	4		4	EDN3	20	57876517	Silent	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	54890812	57876517	5149003	60	56081										
LAMA5	0	genome.wustl.edu	37	chr20	60904057	60904057	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ggacgggctccgttgttataGaagagggagagggaagcagc	18	6	0	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	20	60904057	60904057	G	C	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.4290	p.F1430L	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	19	0	0	9	6	40	-	-	-	C	60904057	G	C	60904057	3	2	655	1	0	0	0	0	1	0	0	0	8663	933	33	2	6985	2	LAMA5	20	60904057	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	3027540	60904057	2121463	61	56082										
ZGPAT	0	genome.wustl.edu	37	chr20	62340158	62340158	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	agcgcccgggccgccaggaaGatgctgagtaccaggctttc	14	13	0	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	20	62340158	62340158	G	A	SNP	ZGPAT	ENST00000328969	human	ensembl	69_37n	1	known	missense	c.226	p.D76N	0.028	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114	16	0	0	15	8	34.78	-	-	-	A	62340158	G	A	62340158	3	1	655	1	0	0	0	0	1	0	0	0	17770	942	33	2	228	2	ZGPAT	20	62340158	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	1436101	62340158	685362	62	56083										
KRTAP13-3	0	genome.wustl.edu	37	chr21	31797741	31797741	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	accagatctacagaatggctGataacaagatgaatggaacc	9	8	1	5			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	21	31797741	31797741	G	C	SNP	KRTAP13-3	ENST00000390690	human	ensembl	69_37n	-1	known	missense	c.490	p.Q164E	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432	18	0	0	19	8	29.63	-	-	-	C	31797741	G	C	31797741	3	2	655	1	0	0	0	0	1	0	0	0	8577	1299	45	2	32	2	KRTAP13-3	21	31797741	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09		31797741	16332154	63	56084										
ACO2	0	genome.wustl.edu	37	chr22	41923399	41923399	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cttgggggccgggccatcatCaccaagagctttgccaggat	13	12	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	22	41923399	41923399	C	T	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	silent	c.2061	p.I687	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	29	0	0	20	9	31.03	-	-	-	T	41923399	C	T	41923399	2	4	655	1	0	0	0	0	0	0	0	1	147	816	29	2		2	ACO2	22	41923399	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		41923399	9381167	64	56085										
WDR13	0	genome.wustl.edu	37	chrX	48463345	48463345	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cctgtgcttgatgtcagcttCaactgcgacgagagcctact	10	12	2	2			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	48463345	48463345	C	T	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	silent	c.1383	p.F461	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	20	0	0	18	13	41.94	-	-	-	T	48463345	C	T	48463345	2	4	655	1	0	0	0	0	0	0	0	1	17372	825	29	2		2	WDR13	23	48463345	Silent	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09		48463345	106807215	65	56086										
GUCY2F	0	genome.wustl.edu	37	chrX	108635297	108635297	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	agtcaaagccctcaggttcaActgtgcagccctttttgaga	9	11	3	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	108635297	108635297	A	T	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.2624	p.V875D	0.964	superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	32	0	0	31	21	39.62	-	-	-	T	108635297	A	T	108635297	3	4	655	1	0	0	0	0	1	0	0	0	6949	43	2	5	726	5	GUCY2F	23	108635297	Missense_Mutation	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09	60171952	108635297	46635263	66	56087										
CHRDL1	0	genome.wustl.edu	37	chrX	109963075	109963075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	acacctacctctgcatacccGgcagcaggaatctggaacag	9	14	2	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	109963075	109963075	G	A	SNP	CHRDL1	ENST00000372042	human	ensembl	69_37n	-1	known	missense	c.529	p.R177W	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938	39	0	0	23	25	52.08	-	-	-	A	109963075	G	A	109963075	3	1	655	1	0	0	0	0	1	0	0	0	3402	1115	39	1	875	1	CHRDL1	23	109963075	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	1327778	109963075	45307485	67	56088										
TRPC5	0	genome.wustl.edu	37	chrX	111078166	111078166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	cacggcaataagctgataggAgttgttcatcatagcaatca	9	8	3	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	111078166	111078166	A	G	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.1879	p.S627P	1.000	prints_TRPC_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	64	0	0	47	12	20.34	-	-	-	G	111078166	A	G	111078166	3	3	655	1	0	0	0	0	1	0	0	0	16678	304	11	5	1062	5	TRPC5	23	111078166	Missense_Mutation	SNP	A	TCGA-C8-A26V-01A-11D-A16D-09	1115091	111078166	44192394	68	56089										
RBMX	0	genome.wustl.edu	37	chrX	135961212	135961212	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	ctggctgcatccttagcgtcTgctgggctttcaaaggtgac	12	11	2	1			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	135961212	135961212	T	C	SNP	RBMX	ENST00000419968	human	ensembl	69_37n	-1	novel	missense	c.184	p.R62G	0.992	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RBMX	HGNC	ENSG00000147274	112	0	0	41	31	43.06	-	-	-	C	135961212	T	C	135961212	3	2	655	1	0	0	0	0	1	0	0	0	13234	1567	55	5	1078	5	RBMX	23	135961212	Missense_Mutation	SNP	T	TCGA-C8-A26V-01A-11D-A16D-09	24883046	135961212	19309348	69	56090										
MAGEC1	0	genome.wustl.edu	37	chrX	140994861	140994861	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	agccctcctcagggggaggaCtccctatctcctcactactt	8	16	3	0			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	140994861	140994861	C	G	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.1671	p.D557E	0.901	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	43	0	0	50	24	32.43	-	-	-	G	140994861	C	G	140994861	3	3	655	1	0	0	0	0	1	0	0	0	9251	564	20	4	1677	4	MAGEC1	23	140994861	Missense_Mutation	SNP	C	TCGA-C8-A26V-01A-11D-A16D-09	5033649	140994861	14275699	70	56091										
MTMR1	0	genome.wustl.edu	37	chrX	149905753	149905753	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.422535211267606	30	6.12086510756836e-12	4.23809523809524	4.71080586080586	3.74647619047619	0.458647672059954	1	23	taagaattgctgataaaataGaatctgggaaaacatctgtg	9	4	2	3			TCGA-C8-A26V-01A-11D-A16D-09	TCGA-C8-A26V-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c5a83f5-983f-434c-ac29-ddb84a7f1019	c546d2fb-09e7-4b5d-a39e-24d6a26e6341	X	149905753	149905753	G	C	SNP	MTMR1	ENST00000445323	human	ensembl	69_37n	1	known	missense	c.1306	p.E436Q	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601	100	0	0	75	28	26.92	-	-	-	C	149905753	G	C	149905753	3	2	655	1	0	0	0	0	1	0	0	0	10010	943	33	2	1324	2	MTMR1	23	149905753	Missense_Mutation	SNP	G	TCGA-C8-A26V-01A-11D-A16D-09	8910892	149905753	5364807	71	56092										
GBP7	0	genome.wustl.edu	37	chr1	89630428	89630428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tcttaccttttccatatcacCcaggccctccgtgtccagaa	5	16	2	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	1	89630428	89630428	C	T	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.304	p.G102S	0.994	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	130	0	0	59	16	21.33	-	-	-	T	89630428	C	T	89630428	3	4	656	1	0	0	0	0	1	0	0	0	6329	623	22	4	1648	4	GBP7	1	89630428	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		89630428	159620193	1	56093										
HRNR	0	genome.wustl.edu	37	chr1	152186443	152186443	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaccgaccggagccagacccAtgtcggccgtagctgggaga	15	13	0	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	1	152186443	152186443	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.7662	p.H2554	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	11	0	0	3	3	50	-	-	-	G	152186443	A	G	152186443	2	3	656	1	0	0	0	0	0	0	0	1	7410	214	8	5		5	HRNR	1	152186443	Silent	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09	62556015	152186443	97064178	2	56094										
DCST2	0	genome.wustl.edu	37	chr1	154995617	154995617	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	actcggaagtggactccattGagaggctcctgccgagcact	12	12	0	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	1	154995617	154995617	G	A	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	missense	c.2081	p.S694L	0.002	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	60	0	0	18	18	50	-	-	-	A	154995617	G	A	154995617	3	1	656	1	0	0	0	0	1	0	0	0	4334	1294	45	2	248	2	DCST2	1	154995617	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	2809174	154995617	94255004	3	56095										
APOB	0	genome.wustl.edu	37	chr2	21226147	21226147	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	actttgatctgagtttcctcAtcagattcccggaccctcaa	6	13	4	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	21226147	21226147	A	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.12147	p.D4049	0.018	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	140	0	0	56	30	34.88	-	-	-	G	21226147	A	G	21226147	2	3	656	1	0	0	0	0	0	0	0	1	787	214	8	5		5	APOB	2	21226147	Silent	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09		21226147	221973226	4	56096										
DOK1	0	genome.wustl.edu	37	chr2	74783592	74783592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	acaggggcacgatgttctcaGagctgactcccatgaagggg	14	10	1	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	74783592	74783592	G	C	SNP	DOK1	ENST00000233668	human	ensembl	69_37n	1	known	missense	c.797	p.R266T	0.004	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325	41	0	0	15	8	34.78	-	-	-	C	74783592	G	C	74783592	3	2	656	1	0	0	0	0	1	0	0	0	4731	942	33	2	815	2	DOK1	2	74783592	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	53557445	74783592	168415781	5	56097										
CCDC74B	0	genome.wustl.edu	37	chr2	130897469	130897469	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gcctgtgggacttaccatttCttggagaggctcttggtgga	14	8	2	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	130897469	130897469	C	T	SNP	CCDC74B	ENST00000409488	human	ensembl	69_37n	-1	novel	missense	c.695	p.R232K	0.982	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	62	0	0	40	16	28.57	-	-	-	T	130897469	C	T	130897469	3	4	656	1	0	0	0	0	1	0	0	0	2875	912	32	2	148	2	CCDC74B	2	130897469	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	56113877	130897469	112301904	6	56098										
XIRP2	0	genome.wustl.edu	37	chr2	168107692	168107692	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	acgctcaagaggaaatcaggAaagtggagaagagagctact	13	6	2	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	168107692	168107692	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9790	p.K3264E	0.998	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	37	0	0	14	7	33.33	-	-	-	G	168107692	A	G	168107692	3	3	656	1	0	0	0	0	1	0	0	0	17527	247	9	5	9820	5	XIRP2	2	168107692	Missense_Mutation	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09	37210223	168107692	75091681	7	56099										
TTN	0	genome.wustl.edu	37	chr2	179426582	179426582	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	agaggtggtttctttcttttCaacaatgtaattgctaattt	7	5	3	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	179426582	179426582	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.76573	p.E25525K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	59	0	0	36	5	12.2	-	-	-	T	179426582	C	T	179426582	3	4	656	1	0	0	0	0	1	0	0	0	16832	835	29	2	23850	2	TTN	2	179426582	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	11318890	179426582	63772791	8	56100										
FAM171B	0	genome.wustl.edu	37	chr2	187626830	187626830	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	aactttacgcagaccttgccCaaaatgccaattcattctca	4	13	2	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	2	187626830	187626830	C	G	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	silent	c.1761	p.P587	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	87	0	0	30	25	45.45	-	-	-	G	187626830	C	G	187626830	2	3	656	1	0	0	0	0	0	0	0	1	5531	581	21	4		4	FAM171B	2	187626830	Silent	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	8200248	187626830	55572543	9	56101										
CSPG5	0	genome.wustl.edu	37	chr3	47610685	47610685	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tggtggagagggagaagttaTcattgtggagctcagatggg	18	3	2	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	3	47610685	47610685	T	A	SNP	CSPG5	ENST00000383738	human	ensembl	69_37n	-1	known	missense	c.1415	p.D472V	1.000	pfam_Neural_ProG_Cyt	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646	187	0	0	42	32	43.24	-	-	-	A	47610685	T	A	47610685	3	1	656	1	0	0	0	0	1	0	0	0	3993	1435	50	5	212	5	CSPG5	3	47610685	Missense_Mutation	SNP	T	TCGA-C8-A26W-01A-11D-A16D-09		47610685	150411745	10	56102										
LRRC58	0	genome.wustl.edu	37	chr3	120067641	120067641	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctctgcagttggttgccgccCaggctcagggtctgcagcgc	14	14	3	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	3	120067641	120067641	C	G	SNP	LRRC58	ENST00000295628	human	ensembl	69_37n	-1	known	silent	c.450	p.L150	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC58	HGNC	ENSG00000163428	17	0	0	14	4	22.22	-	-	-	G	120067641	C	G	120067641	2	3	656	1	0	0	0	0	0	0	0	1	9080	581	21	4		4	LRRC58	3	120067641	Silent	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	72456956	120067641	77954789	11	56103										
RBP1	0	genome.wustl.edu	37	chr3	139258365	139258365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	cttccagtacccagtgaagtCgactggcatttcggggagtg	13	10	0	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	3	139258365	139258365	C	T	SNP	RBP1	ENST00000232219	human	ensembl	69_37n	-1	known	missense	c.196	p.D66N	1.000	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115	12	0	0	10	7	41.18	-	-	-	T	139258365	C	T	139258365	3	4	656	1	0	0	0	0	1	0	0	0	13238	884	31	1	481	1	RBP1	3	139258365	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	19190724	139258365	58764065	12	56104										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	91	0	0	31	41	56.94	-	-	-	G	178952085	A	G	178952085	3	3	656	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09	39693720	178952085	19070345	13	56105										
ABCC5	0	genome.wustl.edu	37	chr3	183677527	183677527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	aaaaaggccattaccttcctCtggctttactgctttttcct	5	12	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	3	183677527	183677527	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.2476	p.E826K	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	283	0	0	212	78	26.9	-	-	-	T	183677527	C	T	183677527	3	4	656	1	0	0	0	0	1	0	0	0	56	922	32	2	1893	2	ABCC5	3	183677527	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	4725442	183677527	14344903	14	56106										
SLIT2	0	genome.wustl.edu	37	chr4	20490503	20490503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	cctggctctccgactggcttCgccaaaggcctcgggttggt	13	14	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	4	20490503	20490503	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.673	p.R225C	1.000	smart_Cys-rich_flank_reg_C	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	94	0	0	41	20	32.79	-	-	-	T	20490503	C	T	20490503	3	4	656	1	0	0	0	0	1	0	0	0	14829	884	31	1	703	1	SLIT2	4	20490503	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		20490503	170663773	15	56107										
MTTP	0	genome.wustl.edu	37	chr4	100532382	100532382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gtggatcttcttctgcctacActggctacatagaacgtatg	9	10	3	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	4	100532382	100532382	A	G	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	missense	c.1852	p.T618A	0.994	pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	158	0	0	58	25	30.12	-	-	-	G	100532382	A	G	100532382	3	3	656	1	0	0	0	0	1	0	0	0	10036	159	6	5	1902	5	MTTP	4	100532382	Missense_Mutation	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09	80041879	100532382	90621894	16	56108										
LY86	0	genome.wustl.edu	37	chr6	6589046	6589046	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaggcggcggtgggaaagccTggcccacacacgtggtctgt	17	11	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	6	6589046	6589046	T	G	SNP	LY86	ENST00000230568	human	ensembl	69_37n	1	known	missense	c.79	p.W27G	0.983	NULL	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	-	no_errors	LY86	HGNC	ENSG00000112799	75	0	0	45	13	22.41	-	-	-	G	6589046	T	G	6589046	3	3	656	1	0	0	0	0	1	0	0	0	9167	1580	55	5	81	5	LY86	6	6589046	Missense_Mutation	SNP	T	TCGA-C8-A26W-01A-11D-A16D-09		6589046	164526021	17	56109										
EYS	0	genome.wustl.edu	37	chr6	64431555	64431555	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ccaggtagccttctgcaccaActcttcctgcttttattata	5	13	2	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	6	64431555	64431555	A	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.8435	p.V2812A	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	266	0	0	106	49	31.41	-	-	-	G	64431555	A	G	64431555	3	3	656	1	0	0	0	0	1	0	0	0	5369	43	2	5	1066	5	EYS	6	64431555	Missense_Mutation	SNP	A	TCGA-C8-A26W-01A-11D-A16D-09	57842509	64431555	106683512	18	56110										
LTV1	0	genome.wustl.edu	37	chr6	144183272	144183272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tgaatacccttgaacccttgGaggatcaagacctgccaatg	9	11	1	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	6	144183272	144183272	G	A	SNP	LTV1	ENST00000367576	human	ensembl	69_37n	1	known	missense	c.955	p.E319K	0.993	pfam_LTV	pfam_LTV	-	no_errors	LTV1	HGNC	ENSG00000135521	114	0	0	52	28	34.57	-	-	-	A	144183272	G	A	144183272	3	1	656	1	0	0	0	0	1	0	0	0	9147	1175	41	2	985	2	LTV1	6	144183272	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	79751717	144183272	26931795	19	56111										
HGF	0	genome.wustl.edu	37	chr7	81334803	81334803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gctggctgcatttctcatttCccattatatagagatgtgcc	8	10	1	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	7	81334803	81334803	C	T	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.1913	p.G638E	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	101	0	0	54	20	27.03	-	-	-	T	81334803	C	T	81334803	3	4	656	1	0	0	0	0	1	0	0	0	7136	855	30	2	281	2	HGF	7	81334803	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		81334803	77803860	20	56112										
GNB2	0	genome.wustl.edu	37	chr7	100276323	100276323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctctcttcttcacaggagtcCtcgctggccacgacaaccgc	8	17	3	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	7	100276323	100276323	C	T	SNP	GNB2	ENST00000303210	human	ensembl	69_37n	1	known	missense	c.922	p.L308F	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB2	HGNC	ENSG00000172354	33	0	0	19	10	34.48	-	-	-	T	100276323	C	T	100276323	3	4	656	1	0	0	0	0	1	0	0	0	6569	681	24	4	956	4	GNB2	7	100276323	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	18941520	100276323	58862340	21	56113										
WDYHV1	0	genome.wustl.edu	37	chr8	124442245	124442245	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	acctatctggaaacaacaggCgagacctggagatggacctg	12	10	1	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	8	124442245	124442245	C	G	SNP	WDYHV1	ENST00000287387	human	ensembl	69_37n	1	known	missense	c.206	p.A69G	1.000	pfam_Prot_N_Gln_amidohydro_ab_roll	pfam_Prot_N_Gln_amidohydro_ab_roll	-	no_errors	WDYHV1	HGNC	ENSG00000156795	115	0	0	63	23	26.74	-	-	-	G	124442245	C	G	124442245	3	3	656	1	0	0	0	0	1	0	0	0	17440	768	27	3	216	3	WDYHV1	8	124442245	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		124442245	21921777	22	56114										
DNAJB5	0	genome.wustl.edu	37	chr9	34996381	34996381	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gctccaaccccttcgatatcTtctttgccagcagccgctcc	6	18	2	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	9	34996381	34996381	T	C	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	1	known	missense	c.547	p.F183L	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	55	0	0	35	4	10.26	-	-	-	C	34996381	T	C	34996381	3	2	656	1	0	0	0	0	1	0	0	0	4658	1609	56	5	557	5	DNAJB5	9	34996381	Missense_Mutation	SNP	T	TCGA-C8-A26W-01A-11D-A16D-09		34996381	106217050	23	56115										
CCDC107	0	genome.wustl.edu	37	chr9	35660615	35660615	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gagcagcacctgaacaacctGatggcccagctggaccccct	10	16	0	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	9	35660615	35660615	G	A	SNP	CCDC107	ENST00000426546	human	ensembl	69_37n	1	known	silent	c.381	p.L127	0.999	NULL	NULL	-	no_errors	CCDC107	HGNC	ENSG00000159884	108	0	0	42	30	41.67	-	-	-	A	35660615	G	A	35660615	2	1	656	1	0	0	0	0	0	0	0	1	2767	1277	45	2		2	CCDC107	9	35660615	Silent	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	664234	35660615	105552816	24	56116										
DBC1	0	genome.wustl.edu	37	chr9	121971044	121971044	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ttgtggcgacagcgtacactGaggccgaaaagcttgcgggc	15	10	0	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	9	121971044	121971044	G	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1098	p.L366	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	158	0	0	63	30	32.26	-	-	-	A	121971044	G	A	121971044	2	1	656	1	0	0	0	0	0	0	0	1	4279	1277	45	2		2	DBC1	9	121971044	Silent	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	86310429	121971044	19242387	25	56117										
LBX1	0	genome.wustl.edu	37	chr10	102987344	102987344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gtcccgcttgagcttagcgcGccgattctggaaccaggtga	13	12	1	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	10	102987344	102987344	G	T	SNP	LBX1	ENST00000370193	human	ensembl	69_37n	-1	known	missense	c.529	p.R177S	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136	52	0	0	27	4	12.9	-	-	-	T	102987344	G	T	102987344	3	4	656	1	0	0	0	0	1	0	0	0	8707	1087	38	3	320	3	LBX1	10	102987344	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		102987344	32547403	26	56118										
SLC6A5	0	genome.wustl.edu	37	chr11	20676303	20676303	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	cagccggactggggcccattCttagctcaacaccgcgggga	13	14	2	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	11	20676303	20676303	C	G	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	missense	c.2283	p.F761L	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	63	0	0	29	13	30.95	-	-	-	G	20676303	C	G	20676303	3	3	656	1	0	0	0	0	1	0	0	0	14776	912	32	2	2345	2	SLC6A5	11	20676303	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		20676303	114330213	27	56119										
FAM76B	0	genome.wustl.edu	37	chr11	95520814	95520814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	aaattgcttcacattttgagCacacttcttacaaattgtgt	5	8	2	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	11	95520814	95520814	C	T	SNP	FAM76B	ENST00000358780	human	ensembl	69_37n	-1	known	missense	c.181	p.A61T	1.000	NULL	NULL	-	no_errors	FAM76B	HGNC	ENSG00000077458	137	0	0	32	31	49.21	-	-	-	T	95520814	C	T	95520814	3	4	656	1	0	0	0	0	1	0	0	0	5670	710	25	4	870	4	FAM76B	11	95520814	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	74844511	95520814	39485702	28	56120										
CPNE8	0	genome.wustl.edu	37	chr12	39161456	39161456	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	cctgccatcttcattacttcGataaaatacaaggaaaggat	6	9	2	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	12	39161456	39161456	G	A	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	nonsense	c.556	p.R186*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	112	0	0	32	26	44.83	-	-	-	A	39161456	G	A	39161456	4	1	656	1	0	0	0	0	0	1	0	0	3848	1066	37	1	1190	1	CPNE8	12	39161456	Nonsense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		39161456	94690439	29	56121										
TMCC3	0	genome.wustl.edu	37	chr12	94975411	94975411	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaaatacctgtatctttcctCttgcagggtctgagaaataa	8	8	3	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	12	94975411	94975411	C	G	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.982	p.E328Q	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	35	0	0	28	7	20	-	-	-	G	94975411	C	G	94975411	3	3	656	1	0	0	0	0	1	0	0	0	16089	922	32	2	463	2	TMCC3	12	94975411	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	55813955	94975411	38876484	30	56122										
GJA3	0	genome.wustl.edu	37	chr13	20717290	20717290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gtgaagtctgactgctcatcGccccacacgtcctccgccgc	9	18	2	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	13	20717290	20717290	G	A	SNP	GJA3	ENST00000241125	human	ensembl	69_37n	-1	known	silent	c.138	p.G46	0.137	pfam_Connexin_N,smart_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743	95	0	0	33	25	43.1	-	-	-	A	20717290	G	A	20717290	2	1	656	1	0	0	0	0	0	0	0	1	6454	1074	38	1		1	GJA3	13	20717290	Silent	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		20717290	94452588	31	56123										
OR4Q3	0	genome.wustl.edu	37	chr14	20216391	20216391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctttctgcagcttctctgtgGataagatattctccttgttt	7	9	3	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	14	20216391	20216391	G	A	SNP	OR4Q3	ENST00000331723	human	ensembl	69_37n	1	known	missense	c.805	p.D269N	0.975	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	150	0	0	72	18	20	-	-	-	A	20216391	G	A	20216391	3	1	656	1	0	0	0	0	1	0	0	0	11154	1174	41	2	807	2	OR4Q3	14	20216391	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		20216391	87133149	32	56124										
HERC2	0	genome.wustl.edu	37	chr15	28387403	28387403	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	cctcatcaagaaacagacggGgcaacggtgttcttttgtca	10	10	4	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	15	28387403	28387403	G	C	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.11681	p.P3894R	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	53	0	0	29	15	34.09	-	-	-	C	28387403	G	C	28387403	3	2	656	1	0	0	0	0	1	0	0	0	7109	1232	43	4	2895	4	HERC2	15	28387403	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		28387403	74143989	33	56125										
GTF3C1	0	genome.wustl.edu	37	chr16	27556779	27556779	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tcatatgaatggggtagacaTcctccaaagccaccgggtcc	10	12	1	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	16	27556779	27556779	T	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.287	p.D96V	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	65	0	0	54	16	22.86	-	-	-	A	27556779	T	A	27556779	3	1	656	1	0	0	0	0	1	0	0	0	6923	1435	50	5	6186	5	GTF3C1	16	27556779	Missense_Mutation	SNP	T	TCGA-C8-A26W-01A-11D-A16D-09		27556779	62797974	34	56126										
SETD1A	0	genome.wustl.edu	37	chr16	30975564	30975564	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ccatcttcctttggccagttCacacctcagtcctcccaagg	6	17	3	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	16	30975564	30975564	C	T	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	silent	c.789	p.F263	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	53	0	0	28	24	46.15	-	-	-	T	30975564	C	T	30975564	2	4	656	1	0	0	0	0	0	0	0	1	14218	825	29	2		2	SETD1A	16	30975564	Silent	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	3418785	30975564	59379189	35	56127										
CDH8	0	genome.wustl.edu	37	chr16	61935083	61935083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaaattggaagcatacatacCcaaaatggacatttctggca	8	8	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	16	61935083	61935083	C	A	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.547	p.G183C	1.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	108	0	0	18	10	35.71	-	-	-	A	61935083	C	A	61935083	3	1	656	1	0	0	0	0	1	0	0	0	3145	637	22	4	1892	4	CDH8	16	61935083	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	30959519	61935083	28419670	36	56128										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	17	7577120	7577120	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273L	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	95	0	0	16	13	44.83	-	-	-	A	7577120	C	A	7577120	3	1	656	1	0	0	0	0	1	0	0	0	16477	536	19	3	468	3	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		7577120	73618090	37	56129										
CORO6	0	genome.wustl.edu	37	chr17	27948283	27948283	+	Frame_Shift_Del	DEL	C	C	-													0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	gaaggcacccccgcctccagCctccacaataatggccagga							TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	17	27948283	27948283	C	-	DEL	CORO6	ENST00000345068	human	ensembl	69_37n	-1	known	frame_shift_del	c.157	p.A53fs	1.000	pfam_DUF1899,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549	62	0	0	106	23	17.56	-	-	-	-	27948283	C	-	27948283	7	5	656	1	0	1	0	1	0	0	0	0	3788	739	26	0	1301	0	CORO6	17	27948283	Frame_Shift_Del	DEL	C	TCGA-C8-A26W-01A-11D-A16D-09	20371163	27948283	53246927	38	56130										
SS18	0	genome.wustl.edu	37	chr18	23619391	23619391	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctgtggcatattgtattgctGagaaggaggctgctgatgca	14	6	0	2			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	18	23619391	23619391	G	C	SNP	SS18	ENST00000415083	human	ensembl	69_37n	-1	known	missense	c.637	p.Q213E	1.000	NULL	pfam_SSXT	-	no_errors	SS18	HGNC	ENSG00000141380	150	0	0	38	29	43.28	-	-	-	C	23619391	G	C	23619391	3	2	656	1	0	0	0	0	1	0	0	0	15266	1299	45	2	643	2	SS18	18	23619391	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		23619391	54457857	39	56131										
UPK1A	0	genome.wustl.edu	37	chr19	36164378	36164378	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctgatcaccaagcagatgctGaccttctacagcgcggacac	9	14	2	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	19	36164378	36164378	G	C	SNP	UPK1A	ENST00000379013	human	ensembl	69_37n	1	known	silent	c.399	p.L133	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668	19	0	0	10	6	37.5	-	-	-	C	36164378	G	C	36164378	2	2	656	1	0	0	0	0	0	0	0	1	17104	1277	45	2		2	UPK1A	19	36164378	Silent	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		36164378	22964605	40	56132										
CYP2F1	0	genome.wustl.edu	37	chr19	41627364	41627364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ttgcactccttaccctcaggCgagccctttgaccccacgtt	7	17	1	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	19	41627364	41627364	C	T	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	1	known	silent	c.486	p.G162	0.025	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	48	0	0	44	11	20	-	-	-	T	41627364	C	T	41627364	2	4	656	1	0	0	0	0	0	0	0	1	4202	782	27	1		1	CYP2F1	19	41627364	Silent	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	5462986	41627364	17501619	41	56133										
SIGLEC8	0	genome.wustl.edu	37	chr19	51961352	51961352	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tccaaatgtccccaaggagtTggaatcggccctgggtctct	11	12	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	19	51961352	51961352	T	C	SNP	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	missense	c.290	p.Q97R	0.003	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	302	1	0.33	165	54	24.55	-	-	-	C	51961352	T	C	51961352	3	2	656	1	0	0	0	0	1	0	0	0	14403	1812	63	5	1237	5	SIGLEC8	19	51961352	Missense_Mutation	SNP	T	TCGA-C8-A26W-01A-11D-A16D-09	10333988	51961352	7167631	42	56134										
LILRB1	0	genome.wustl.edu	37	chr19	55148052	55148052	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tccccactgtctggggaattCctggacacaaaggacagaca	10	12	1	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	19	55148052	55148052	C	A	SNP	LILRB1	ENST00000324602	human	ensembl	69_37n	1	known	missense	c.1761	p.F587L	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB1	HGNC	ENSG00000104972	146	0	0	91	23	20.18	-	-	-	A	55148052	C	A	55148052	3	1	656	1	0	0	0	0	1	0	0	0	8845	854	30	2	1811	2	LILRB1	19	55148052	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	3186700	55148052	3980931	43	56135										
MYLK2	0	genome.wustl.edu	37	chr20	30409483	30409483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	ctgttccctcagagaaatccGaggtggggcaggccctctgt	13	12	2	1			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	20	30409483	30409483	G	A	SNP	MYLK2	ENST00000375985	human	ensembl	69_37n	1	known	missense	c.715	p.E239K	0.907	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306	41	0	0	17	12	41.38	-	-	-	A	30409483	G	A	30409483	3	1	656	1	0	0	0	0	1	0	0	0	10129	1059	37	1	725	1	MYLK2	20	30409483	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		30409483	32616037	44	56136										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31967344	31967344	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tactctggagacctgatccaGaagatgagcaaaacgaagtc	10	9	1	5			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	20	31967344	31967344	G	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	silent	c.1072	p.L358	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	89	0	0	43	20	31.75	-	-	-	A	31967344	G	A	31967344	2	1	656	1	0	0	0	0	0	0	0	1	3174	933	33	2		2	CDK5RAP1	20	31967344	Silent	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09	1557861	31967344	31058176	45	56137										
NFATC2	0	genome.wustl.edu	37	chr20	50051765	50051765	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	tgaggctgacttcgttttctCttcccattgatgacgtagaa	9	9	1	5			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	20	50051765	50051765	C	G	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	missense	c.1992	p.K664N	0.999	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	171	0	0	77	37	32.46	-	-	-	G	50051765	C	G	50051765	3	3	656	1	0	0	0	0	1	0	0	0	10434	912	32	2	845	2	NFATC2	20	50051765	Missense_Mutation	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09	18084421	50051765	12973755	46	56138										
SGSM3	0	genome.wustl.edu	37	chr22	40802535	40802535	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	aggacgcggagctgcttctgGgggtggccatgcggctggcc	19	11	1	0			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	22	40802535	40802535	G	C	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	missense	c.1054	p.G352R	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	16	0	0	13	7	35	-	-	-	C	40802535	G	C	40802535	3	2	656	1	0	0	0	0	1	0	0	0	14312	1232	43	4	1088	4	SGSM3	22	40802535	Missense_Mutation	SNP	G	TCGA-C8-A26W-01A-11D-A16D-09		40802535	10502031	47	56139										
KIAA1210	0	genome.wustl.edu	37	chrX	118221704	118221704	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	15	8.89065663720831e-05	3.41711956521739	3.97628458498024	3.12422360248447	0.46609222478544	1	11	atttcctgaactttagacctCtttaagaactgggtagcata	7	8	1	3			TCGA-C8-A26W-01A-11D-A16D-09	TCGA-C8-A26W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3db354e-f22c-4576-a7d7-6515f1c11002	327119a0-07dd-46c3-8b02-733bfaa5f959	X	118221704	118221704	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	silent	c.3489	p.K1163	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	110	0	0	34	15	30.61	-	-	-	T	118221704	C	T	118221704	2	4	656	1	0	0	0	0	0	0	0	1	8266	912	32	2		2	KIAA1210	23	118221704	Silent	SNP	C	TCGA-C8-A26W-01A-11D-A16D-09		118221704	37048856	48	56140										
PIK3CD	0	genome.wustl.edu	37	chr1	9784395	9784395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gaccaagtttggaatcaaccGcgagcgtgtcccattcatcc	9	13	2	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	9784395	9784395	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	missense	c.2852	p.R951H	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	68	0	0	53	15	22.06	-	-	-	A	9784395	G	A	9784395	3	1	657	1	0	0	0	0	1	0	0	0	11989	1087	38	1	2858	1	PIK3CD	1	9784395	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09		9784395	239466226	1	56141										
KCND3	0	genome.wustl.edu	37	chr1	112321061	112321061	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tttttaaaaagttataccttGatggtggaggttcgtacaga	10	4	0	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	112321061	112321061	G	C	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	missense	c.1515	p.I505M	1.000	pfam_K_chnl_volt-dep_Kv4_C	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	47	0	0	58	15	20.55	-	-	-	C	112321061	G	C	112321061	3	2	657	1	0	0	0	0	1	0	0	0	8074	1280	45	2	464	2	KCND3	1	112321061	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	102536666	112321061	136929560	2	56142										
ATF6	0	genome.wustl.edu	37	chr1	161821536	161821537	+	Frame_Shift_Ins	INS	-	-	A													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	atcattctgtttcaaatgacINSaaagccctgatggtgctaac							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	161821536	161821537	-	A	INS	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	frame_shift_ins	c.1344_1345	p.A449fs	1.000:1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	67	0	0	85	42	33.07	-	-	-	A	161821537	-	A	161821536	7	5	657	1	0	1	1	0	0	0	0	0	1088	477	17	0	1386	0	ATF6	1	161821536	Frame_Shift_Ins	INS	-	TCGA-C8-A26X-01A-31D-A16D-09	49500475	161821536	87429085	3	56143										
DENND1B	0	genome.wustl.edu	37	chr1	197641237	197641240	+	Frame_Shift_Del	DEL	TGTC	TGTC	-													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aaatctctgtttactttcaaTgtctgtcagtacaaaggtaa							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	TGTC	TGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	197641237	197641240	TGTC	-	DEL	DENND1B	ENST00000367396	human	ensembl	69_37n	-1	known	frame_shift_del	c.226_223	p.D75fs	1.000:1.000:1.000:1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	56	0	0	76	15	16.3	-	-	-	-	197641240	TGTC	-	197641237	7	5	657	1	0	1	0	1	0	0	0	0	4463	1464	51	0	2218	0	DENND1B	1	197641237	Frame_Shift_Del	DEL	TGTC	TCGA-C8-A26X-01A-31D-A16D-09	35819701	197641237	51609384	4	56144										
REL	0	genome.wustl.edu	37	chr2	61149040	61149040	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	atggcacctctgccttcttcAagctggtcatcagtggccca	9	14	5	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	61149040	61149040	A	G	SNP	REL	ENST00000295025	human	ensembl	69_37n	1	known	silent	c.1230	p.S410	0.964	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	REL	HGNC	ENSG00000162924	59	0	0	33	6	15.38	-	-	-	G	61149040	A	G	61149040	2	3	657	1	0	0	0	0	0	0	0	1	13298	117	5	5		5	REL	2	61149040	Silent	SNP	A	TCGA-C8-A26X-01A-31D-A16D-09		61149040	182050333	5	56145										
FAP	0	genome.wustl.edu	37	chr2	163072473	163072473	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tacgcagggtaagtggtatcGataataaatatccgaacaac	9	7	0	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	163072473	163072473	G	A	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	silent	c.801	p.I267	0.412	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	35	0	0	42	8	16	-	-	-	A	163072473	G	A	163072473	2	1	657	1	0	0	0	0	0	0	0	1	5719	1048	37	1		1	FAP	2	163072473	Silent	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	101923433	163072473	80126900	6	56146										
TTN	0	genome.wustl.edu	37	chr2	179440959	179440959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tgaagatcaggaacaacgaaCtgagtgattctgagggcggt	14	6	2	5			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	179440959	179440959	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.62196	p.Q20732H	0.914	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	44	0	0	45	15	25	-	-	-	G	179440959	C	G	179440959	3	3	657	1	0	0	0	0	1	0	0	0	16832	564	20	4	38227	4	TTN	2	179440959	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	16368486	179440959	63758414	7	56147										
TTN	0	genome.wustl.edu	37	chr2	179587200	179587200	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gagccatttaatcgacaagtGagtgtaacaggtaaccccac	9	10	0	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	179587200	179587200	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.18582	p.L6194	0.980	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	22	0	0	25	11	30.56	-	-	-	T	179587200	G	T	179587200	2	4	657	1	0	0	0	0	0	0	0	1	16832	1277	45	2		2	TTN	2	179587200	Silent	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	146241	179587200	63612173	8	56148										
SCN5A	0	genome.wustl.edu	37	chr3	38592337	38592337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tggatgcggtccccactcacCatgggcaggtccatgttgat	12	12	1	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	38592337	38592337	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5526	p.M1842I	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	66	0	0	75	11	12.79	-	-	-	T	38592337	C	T	38592337	3	4	657	1	0	0	0	0	1	0	0	0	14010	594	21	4	528	4	SCN5A	3	38592337	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		38592337	159430093	9	56149										
PVRL3	0	genome.wustl.edu	37	chr3	110841072	110841072	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	caaatccaccacccttcaaaTctgtgtggagcaggtaatgt	8	11	2	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	110841072	110841072	T	G	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	1	known	missense	c.904	p.S302A	1.000	pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	42	0	0	50	6	10.53	-	-	-	G	110841072	T	G	110841072	3	3	657	1	0	0	0	0	1	0	0	0	12924	1435	50	5	918	5	PVRL3	3	110841072	Missense_Mutation	SNP	T	TCGA-C8-A26X-01A-31D-A16D-09	72248735	110841072	87181358	10	56150										
POLQ	0	genome.wustl.edu	37	chr3	121206799	121206799	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tggaaaagtttatagtcattGattttagcttttcattttct	6	4	3	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	121206799	121206799	G	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.4979	p.S1660L	0.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	48	0	0	60	7	10.45	-	-	-	A	121206799	G	A	121206799	3	1	657	1	0	0	0	0	1	0	0	0	12282	1294	45	2	2853	2	POLQ	3	121206799	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	10365727	121206799	76815631	11	56151										
EIF4A2	0	genome.wustl.edu	37	chr3	186507018	186507018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tgagactttctacaatactaCagtggaggagatgcccatga	10	8	1	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	186507018	186507018	C	T	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.1187	p.T396I	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	50	0	0	85	10	10.42	-	-	-	T	186507018	C	T	186507018	3	4	657	1	0	0	0	0	1	0	0	0	5062	478	17	4	1226	4	EIF4A2	3	186507018	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	65300219	186507018	11515412	12	56152										
MUC4	0	genome.wustl.edu	37	chr3	195506579	195506579	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	acctgtggatactgaggaagTgtcggtgacaggaagagggg	18	5	0	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	195506579	195506579	T	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11872	p.T3958A	0.255	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	25	0	0	28	8	22.22	-	-	-	C	195506579	T	C	195506579	3	2	657	1	0	0	0	0	1	0	0	0	10050	1696	59	5		5	MUC4	3	195506579	Missense_Mutation	SNP	T	TCGA-C8-A26X-01A-31D-A16D-09	8999561	195506579	2515851	13	56153										
PROM1	0	genome.wustl.edu	37	chr4	16040615	16040615	+	Frame_Shift_Del	DEL	C	C	-													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	atgccttctgtaagaattttCtcaaagtatctggaaaaaaa							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	16040615	16040615	C	-	DEL	PROM1	ENST00000447510	human	ensembl	69_37n	-1	known	frame_shift_del	c.230	p.R77fs	0.006	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	41	0	0	45	11	19.3	-	-	-	-	16040615	C	-	16040615	7	5	657	1	0	1	0	1	0	0	0	0	12636	913	32	0	2467	0	PROM1	4	16040615	Frame_Shift_Del	DEL	C	TCGA-C8-A26X-01A-31D-A16D-09		16040615	175113661	14	56154										
CLOCK	0	genome.wustl.edu	37	chr4	56316278	56316279	+	Frame_Shift_Del	DEL	GT	GT	-													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aggaagggtctgagacggccGtgtgagatgattttcttgaa							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	56316278	56316279	GT	-	DEL	CLOCK	ENST00000309964	human	ensembl	69_37n	-1	known	frame_shift_del	c.1328_1327	p.T443fs	1.000:1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852	53	0	0	71	12	14.46	-	-	-	-	56316279	GT	-	56316278	7	5	657	1	0	1	0	1	0	0	0	0	3579	1145	40	0	1244	0	CLOCK	4	56316278	Frame_Shift_Del	DEL	GT	TCGA-C8-A26X-01A-31D-A16D-09	40275663	56316278	134837998	15	56155										
CCRN4L	0	genome.wustl.edu	37	chr4	139964462	139964462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	ttgccctagtacccacccacCtatcagggttatgcaatgga	8	13	1	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	139964462	139964462	C	T	SNP	CCRN4L	ENST00000280614	human	ensembl	69_37n	1	known	missense	c.425	p.P142L	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	CCRN4L	HGNC	ENSG00000151014	16	0	0	15	6	28.57	-	-	-	T	139964462	C	T	139964462	3	4	657	1	0	0	0	0	1	0	0	0	2980	681	24	4	431	4	CCRN4L	4	139964462	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	83648184	139964462	51189814	16	56156										
TLR3	0	genome.wustl.edu	37	chr4	187004711	187004711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tcagaagaatctcataacatCcgttgagaagaaggttttcg	9	7	2	4			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	187004711	187004711	C	T	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.1871	p.S624F	0.032	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	41	0	0	32	7	17.95	-	-	-	T	187004711	C	T	187004711	3	4	657	1	0	0	0	0	1	0	0	0	16047	855	30	2	1881	2	TLR3	4	187004711	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	47040249	187004711	4149565	17	56157										
TAF9	0	genome.wustl.edu	37	chr5	68661327	68661327	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aggagaggtaaaagactgatCagcgcggcactggattgcca	14	8	1	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	5	68661327	68661327	C	A	SNP	TAF9	ENST00000217893	human	ensembl	69_37n	-1	known	missense	c.238	p.D80Y	1.000	pfam_TFIID-31,superfamily_Histone-fold	pfam_TFIID-31,pfam_BTP,superfamily_Histone-fold	-	no_errors	TAF9	HGNC	ENSG00000085231	59	0	0	58	17	22.67	-	-	-	A	68661327	C	A	68661327	3	1	657	1	0	0	0	0	1	0	0	0	15627	826	29	2	970	2	TAF9	5	68661327	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		68661327	112253933	18	56158										
MSH3	0	genome.wustl.edu	37	chr5	80088607	80088607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aaaatggaaggcaccctgtgAttgatgtgttgctgggagaa	14	5	0	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	5	80088607	80088607	A	G	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.2599	p.I867V	1.000	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	71	0	0	52	25	32.05	-	-	-	G	80088607	A	G	80088607	3	3	657	1	0	0	0	0	1	0	0	0	9943	333	12	5	2673	5	MSH3	5	80088607	Missense_Mutation	SNP	A	TCGA-C8-A26X-01A-31D-A16D-09	11427280	80088607	100826653	19	56159										
ENPP5	0	genome.wustl.edu	37	chr6	46135740	46135740	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	catttgcaacaatcccatgaTtctctgcaaagaggccagtt	7	11	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	6	46135740	46135740	T	A	SNP	ENPP5	ENST00000230565	human	ensembl	69_37n	-1	known	missense	c.260	p.N87I	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796	41	0	0	40	14	25.93	-	-	-	A	46135740	T	A	46135740	3	1	657	1	0	0	0	0	1	0	0	0	5170	1493	52	5	1185	5	ENPP5	6	46135740	Missense_Mutation	SNP	T	TCGA-C8-A26X-01A-31D-A16D-09		46135740	124979327	20	56160										
EEF1A1	0	genome.wustl.edu	37	chr6	74227785	74227786	+	Frame_Shift_Ins	INS	-	-	A													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gtctgagaagctctcaacacINSacatgggcttgccaggaacc							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	6	74227785	74227786	-	A	INS	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1232_1231	p.C411fs	1.000:1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	22	0	0	34	13	27.66	-	-	-	A	74227786	-	A	74227785	7	5	657	1	0	1	1	0	0	0	0	0	4958	478	17	0	164	0	EEF1A1	6	74227785	Frame_Shift_Ins	INS	-	TCGA-C8-A26X-01A-31D-A16D-09	28092045	74227785	96887282	21	56161										
TSGA13	0	genome.wustl.edu	37	chr7	130368439	130368439	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	taacactccttacctctttgCtattgacaaccattcctttc	2	14	1	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	7	130368439	130368439	C	G	SNP	TSGA13	ENST00000356588	human	ensembl	69_37n	-1	known	missense	c.95	p.S32T	0.000	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265	113	0	0	124	34	21.52	-	-	-	G	130368439	C	G	130368439	3	3	657	1	0	0	0	0	1	0	0	0	16715	797	28	4	756	4	TSGA13	7	130368439	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		130368439	28770224	22	56162										
PRKDC	0	genome.wustl.edu	37	chr8	48801132	48801132	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tctgtgaagctgtttacaggCagacacaacagcagccagcc	10	12	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	8	48801132	48801132	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.4357	p.A1453S	0.994	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	32	0	0	41	10	19.61	-	-	-	A	48801132	C	A	48801132	3	1	657	1	0	0	0	0	1	0	0	0	12602	710	25	4	8238	4	PRKDC	8	48801132	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		48801132	97562890	23	56163										
PLCE1	0	genome.wustl.edu	37	chr10	95994013	95994013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tctgtgaagtgcttgacggcGcctccggtctcatgaagctt	12	11	2	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	10	95994013	95994013	G	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.2158	p.A720T	0.992	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	59	0	0	85	11	11.34	-	-	-	A	95994013	G	A	95994013	3	1	657	1	0	0	0	0	1	0	0	0	12108	1087	38	1	2462	1	PLCE1	10	95994013	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09		95994013	39540734	24	56164										
GBF1	0	genome.wustl.edu	37	chr10	104111081	104111081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	ctgtcacccatgctcgttttGtgggcacggatcctgccagt	11	13	1	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	10	104111081	104111081	G	A	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.364	p.V122M	1.000	superfamily_ARM-type_fold	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	42	0	0	27	14	34.15	-	-	-	A	104111081	G	A	104111081	3	1	657	1	0	0	0	0	1	0	0	0	6321	1377	48	4	378	4	GBF1	10	104111081	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	8117068	104111081	31423666	25	56165										
CCDC89	0	genome.wustl.edu	37	chr11	85396110	85396110	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	ccttgcttaaaagatccaagCtgtgctttttgaaggcttca	8	9	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	11	85396110	85396110	C	A	SNP	CCDC89	ENST00000316398	human	ensembl	69_37n	-1	known	missense	c.1064	p.S355I	1.000	NULL	NULL	-	no_errors	CCDC89	HGNC	ENSG00000179071	72	0	0	67	19	22.09	-	-	-	A	85396110	C	A	85396110	3	1	657	1	0	0	0	0	1	0	0	0	2893	797	28	4	64	4	CCDC89	11	85396110	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		85396110	49610406	26	56166										
CLEC9A	0	genome.wustl.edu	37	chr12	10213790	10213790	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	atccaacaagagagggcactGctaaactttacagaatggaa	9	8	0	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	10213790	10213790	G	A	SNP	CLEC9A	ENST00000355819	human	ensembl	69_37n	1	putative	silent	c.237	p.L79	0.003	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC9A	HGNC	ENSG00000197992	30	0	0	37	15	28.85	-	-	-	A	10213790	G	A	10213790	2	1	657	1	0	0	0	0	0	0	0	1	3552	1306	46	4		4	CLEC9A	12	10213790	Silent	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09		10213790	123638105	27	56167										
MLL2	0	genome.wustl.edu	37	chr12	49427194	49427194	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	tgggacccagagcttggtttGtctgtactccaggaccctgc	12	12	1	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	49427194	49427194	G	C	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.11294	p.T3765R	0.294	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	33	0	0	25	7	21.88	-	-	-	C	49427194	G	C	49427194	3	2	657	1	0	0	0	0	1	0	0	0	9692	1377	48	4	5383	4	MLL2	12	49427194	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	39213404	49427194	84424701	28	56168										
C12orf42	0	genome.wustl.edu	37	chr12	103700001	103700001	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	ggatggtgctggagaggaacGgaattcttcatagctttctt	13	6	3	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	103700001	103700001	G	T	SNP	C12orf42	ENST00000378113	human	ensembl	69_37n	-1	known	missense	c.382	p.R128S	0.000	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	68	0	0	80	19	19.19	-	-	-	T	103700001	G	T	103700001	3	4	657	1	0	0	0	0	1	0	0	0	1700	1116	39	3	708	3	C12orf42	12	103700001	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	54272807	103700001	30151894	29	56169										
NCOR2	0	genome.wustl.edu	37	chr12	124904522	124904522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	cctggctcttgccgcggcgcCgatagctccgtctcaccagg	12	17	2	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	124904522	124904522	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	missense	c.1463	p.R488Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	59	0	0	68	20	22.47	-	-	-	T	124904522	C	T	124904522	3	4	657	1	0	0	0	0	1	0	0	0	10308	652	23	1	6245	1	NCOR2	12	124904522	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	21204521	124904522	8947373	30	56170										
ACIN1	0	genome.wustl.edu	37	chr14	23548943	23548943	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aactgtcaggagagcgagatCttgatctagaactggaggag	14	6	3	4			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	14	23548943	23548943	C	A	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.1775	p.R592I	1.000	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	95	0	0	132	34	20.48	-	-	-	A	23548943	C	A	23548943	3	1	657	1	0	0	0	0	1	0	0	0	142	913	32	2	2453	2	ACIN1	14	23548943	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		23548943	83800597	31	56171										
DYX1C1	0	genome.wustl.edu	37	chr15	55742419	55742419	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aactagagtaagtatatataCctcctcctcttctgctactt	4	11	2	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	15	55742419	55742419	C	A	SNP	DYX1C1	ENST00000321149	human	ensembl	69_37n	-1	known	splice_site	c.783+1	e5+1	1.000	-	-	-	no_errors	DYX1C1	HGNC	ENSG00000256061	68	0	0	68	10	12.82	-	-	-	A	55742419	C	A	55742419	5	1	657	1	0	0	0	0	0	0	1	0	4897	521	18	4	601	4	DYX1C1	15	55742419	Splice_Site	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		55742419	46788973	32	56172										
SRCAP	0	genome.wustl.edu	37	chr16	30749899	30749899	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	agccccgagaatggagacggAgcactgctcgccatcacccc	11	16	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	16	30749899	30749899	A	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.8538	p.G2846	0.421	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	21	0	0	11	7	38.89	-	-	-	T	30749899	A	T	30749899	2	4	657	1	0	0	0	0	0	0	0	1	15226	291	11	5		5	SRCAP	16	30749899	Silent	SNP	A	TCGA-C8-A26X-01A-31D-A16D-09		30749899	59604854	33	56173										
TP53	0	genome.wustl.edu	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	7578413	7578413	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.517	p.V173M	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	23	0	0	27	10	27.03	-	-	-	T	7578413	C	T	7578413	3	4	657	1	0	0	0	0	1	0	0	0	16477	478	17	4	781	4	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09		7578413	73616797	34	56174										
UNC13D	0	genome.wustl.edu	37	chr17	73832707	73832707	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	agacagagagggggaagacaGagcggaacctccggatgagg	18	7	0	5			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	73832707	73832707	G	A	SNP	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	missense	c.1244	p.S415F	0.008	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	UNC13D	HGNC	ENSG00000092929	21	0	0	26	9	25.71	-	-	-	A	73832707	G	A	73832707	3	1	657	1	0	0	0	0	1	0	0	0	17084	942	33	2	2104	2	UNC13D	17	73832707	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09	66254294	73832707	7362503	35	56175										
ZNF85	0	genome.wustl.edu	37	chr19	21132063	21132063	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gtcctcaaaccttattaaacAtaagaaaattcatactggag	5	8	2	1			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	19	21132063	21132063	A	G	SNP	ZNF85	ENST00000328178	human	ensembl	69_37n	1	known	missense	c.743	p.H248R	0.980	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750	18	0	0	28	9	24.32	-	-	-	G	21132063	A	G	21132063	3	3	657	1	0	0	0	0	1	0	0	0	18286	217	8	5	757	5	ZNF85	19	21132063	Missense_Mutation	SNP	A	TCGA-C8-A26X-01A-31D-A16D-09		21132063	37996920	36	56176										
MYO18B	0	genome.wustl.edu	37	chr22	26164533	26164533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	cccgaaagctgagaagacccGgactgggggtcttggggacc	16	11	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	26164533	26164533	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.650	p.R217Q	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	18	0	0	14	5	26.32	-	-	-	A	26164533	G	A	26164533	3	1	657	1	0	0	0	0	1	0	0	0	10138	1116	39	1	660	1	MYO18B	22	26164533	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09		26164533	25140033	37	56177										
GGA1	0	genome.wustl.edu	37	chr22	38013003	38013003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	ggaggcgatccaggccttgaCggtgagaaggggagaggcca	19	8	0	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	38013003	38013003	C	T	SNP	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	missense	c.203	p.T68M	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	14	0	0	10	7	41.18	-	-	-	T	38013003	C	T	38013003	3	4	657	1	0	0	0	0	1	0	0	0	6404	550	19	1	213	1	GGA1	22	38013003	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	11848470	38013003	13291563	38	56178										
GCAT	0	genome.wustl.edu	37	chr22	38206091	38206091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gagcagccaccctgaggtgaTccaggcaggtctgcaggctc	14	13	1	2			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	38206091	38206091	T	C	SNP	GCAT	ENST00000248924	human	ensembl	69_37n	1	known	missense	c.254	p.I85T	1.000	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	-	no_errors	GCAT	HGNC	ENSG00000100116	62	0	0	50	15	23.08	-	-	-	C	38206091	T	C	38206091	3	2	657	1	0	0	0	0	1	0	0	0	6334	1435	50	5	338	5	GCAT	22	38206091	Missense_Mutation	SNP	T	TCGA-C8-A26X-01A-31D-A16D-09	193088	38206091	13098475	39	56179										
PRICKLE3	0	genome.wustl.edu	37	chrX	49034432	49034432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gctctgacgcatgacatagcGctgccctcctagtgaagctt	10	13	1	3			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	49034432	49034432	G	A	SNP	PRICKLE3	ENST00000376317	human	ensembl	69_37n	-1	known	missense	c.865	p.R289C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	20	0	0	16	9	36	-	-	-	A	49034432	G	A	49034432	3	1	657	1	0	0	0	0	1	0	0	0	12569	1087	38	1	994	1	PRICKLE3	23	49034432	Missense_Mutation	SNP	G	TCGA-C8-A26X-01A-31D-A16D-09		49034432	106236128	40	56180										
SLC16A2	0	genome.wustl.edu	37	chrX	73751293	73751293	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	aaaggatgttcaagaaagagCagagagattccagcaaggat	12	5	1	4			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	73751293	73751293	C	T	SNP	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	nonsense	c.1747	p.Q583*	0.995	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	60	0	0	64	17	20.99	-	-	-	T	73751293	C	T	73751293	4	4	657	1	0	0	0	0	0	1	0	0	14497	711	25	4	1769	4	SLC16A2	23	73751293	Nonsense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	24716861	73751293	81519267	41	56181										
DOCK11	0	genome.wustl.edu	37	chrX	117732028	117732028	+	Frame_Shift_Del	DEL	A	A	-													0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	attaaatgggtagatggtgcAaagcctttgttgaagattaa							TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	117732028	117732028	A	-	DEL	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	frame_shift_del	c.2421	p.K808fs	0.998	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	61	0	0	91	11	10.68	-	-	-	-	117732028	A	-	117732028	7	5	657	1	0	1	0	1	0	0	0	0	4721	117	5	0	2507	0	DOCK11	23	117732028	Frame_Shift_Del	DEL	A	TCGA-C8-A26X-01A-31D-A16D-09	43980735	117732028	37538532	42	56182										
ARHGAP4	0	genome.wustl.edu	37	chrX	153174974	153174974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.949507389162562	1.66163793103448	0.781947261663286	1	1	0	gtctgcagccctgcgcccacCacctgcttctccgtcctgcg	9	20	2	0			TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	153174974	153174974	C	A	SNP	ARHGAP4	ENST00000454164	human	ensembl	69_37n	-1	novel	missense	c.695	p.W232L	0.000	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon	ARHGAP4	HGNC	ENSG00000089820	11	0	0	9	5	35.71	-	-	-	A	153174974	C	A	153174974	3	1	657	1	0	0	0	0	1	0	0	0	887	581	21	4	422	4	ARHGAP4	23	153174974	Missense_Mutation	SNP	C	TCGA-C8-A26X-01A-31D-A16D-09	35442946	153174974	2095586	43	56183										
CPSF3L	0	genome.wustl.edu	37	chr1	1250299	1250299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggtcgtggcgtacgtggactCtgtgatgagcaggttggggc	19	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	1250299	1250299	C	T	SNP	CPSF3L	ENST00000540437	human	ensembl	69_37n	-1	known	missense	c.625	p.E209K	1.000	smart_Beta-lactamas-like	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054	42	0	0	33	18	35.29	-	-	-	T	1250299	C	T	1250299	3	4	658	1	0	0	0	0	1	0	0	0	3857	922	32	2	1239	2	CPSF3L	1	1250299	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		1250299	248000322	1	56184										
CAMTA1	0	genome.wustl.edu	37	chr1	7309651	7309651	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagatgggaaaacgaccagaGaggaccacatgaaactcaag	11	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	7309651	7309651	G	C	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	1	known	missense	c.403	p.E135Q	1.000	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	41	0	0	51	28	35.44	-	-	-	C	7309651	G	C	7309651	3	2	658	1	0	0	0	0	1	0	0	0	2638	943	33	2	421	2	CAMTA1	1	7309651	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6059352	7309651	241940970	2	56185										
GPR157	0	genome.wustl.edu	37	chr1	9171339	9171339	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taagggcagcgcctaccgctCtgttgatgtgcttccggacc	12	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	9171339	9171339	C	T	SNP	GPR157	ENST00000377411	human	ensembl	69_37n	-1	known	missense	c.593	p.R198K	0.948	pfam_GPCR_2_secretin-like,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_7TM_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_supfam,pfscan_GPCR_2-like,prints_GCR1-cAMP_receptor	-	no_errors	GPR157	HGNC	ENSG00000180758	27	0	0	35	6	14.29	-	-	-	T	9171339	C	T	9171339	3	4	658	1	0	0	0	0	1	0	0	0	6712	913	32	2	426	2	GPR157	1	9171339	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1861688	9171339	240079282	3	56186										
KIF1B	0	genome.wustl.edu	37	chr1	10412788	10412788	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctgaagtcttcccacaactCtagcaggtgggacacccaga	9	14	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	10412788	10412788	C	G	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.3911	p.S1304C	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	76	0	0	53	49	48.04	-	-	-	G	10412788	C	G	10412788	3	3	658	1	0	0	0	0	1	0	0	0	8336	913	32	2	5538	2	KIF1B	1	10412788	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1241449	10412788	238837833	4	56187										
KIAA2013	0	genome.wustl.edu	37	chr1	11982839	11982839	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcctgctgggccatgtgctCatcatgggccaggatggcct	14	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	11982839	11982839	C	T	SNP	KIAA2013	ENST00000376576	human	ensembl	69_37n	-1	known	missense	c.1741	p.E581K	1.000	pfam_DUF2152	pfam_DUF2152	-	no_errors	KIAA2013	HGNC	ENSG00000116685	48	0	0	35	14	28.57	-	-	-	T	11982839	C	T	11982839	3	4	658	1	0	0	0	0	1	0	0	0	8319	835	29	2	171	2	KIAA2013	1	11982839	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1570051	11982839	237267782	5	56188										
VPS13D	0	genome.wustl.edu	37	chr1	12337412	12337412	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgatattggctactttgaatCtgtgtttgtcagaatggaag	11	4	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	12337412	12337412	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.3767	p.S1256F	0.992	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	41	0	0	49	8	14.04	-	-	-	T	12337412	C	T	12337412	3	4	658	1	0	0	0	0	1	0	0	0	17289	913	32	2	3837	2	VPS13D	1	12337412	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	354573	12337412	236913209	6	56189										
AADACL4	0	genome.wustl.edu	37	chr1	12726700	12726700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggctctctctttcccatgttCcctgaagattgtgaatgctg	9	11	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	12726700	12726700	C	T	SNP	AADACL4	ENST00000376221	human	ensembl	69_37n	1	known	missense	c.1178	p.S393F	0.001	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518	10	0	0	13	4	23.53	-	-	-	T	12726700	C	T	12726700	3	4	658	1	0	0	0	0	1	0	0	0	13	855	30	2	1192	2	AADACL4	1	12726700	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	389288	12726700	236523921	7	56190										
PAX7	0	genome.wustl.edu	37	chr1	18961014	18961014	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccatccggcctggggccatCggcggcagcaagcccagagt	14	15	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	18961014	18961014	C	T	SNP	PAX7	ENST00000375375	human	ensembl	69_37n	1	known	silent	c.303	p.I101	0.988	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeodomain,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,prints_Paired_dom,pfscan_Homeodomain,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709	13	0	0	11	6	35.29	-	-	-	T	18961014	C	T	18961014	2	4	658	1	0	0	0	0	0	0	0	1	11557	874	31	1		1	PAX7	1	18961014	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6234314	18961014	230289607	8	56191										
SH2D5	0	genome.wustl.edu	37	chr1	21050165	21050165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttctccgtcaggctgccctCgctctccaccaggcacgagt	10	17	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	21050165	21050165	C	T	SNP	SH2D5	ENST00000444387	human	ensembl	69_37n	-1	known	missense	c.862	p.E288K	0.916	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SH2D5	HGNC	ENSG00000189410	11	0	0	9	6	40	-	-	-	T	21050165	C	T	21050165	3	4	658	1	0	0	0	0	1	0	0	0	14325	893	31	1	421	1	SH2D5	1	21050165	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2089151	21050165	228200456	9	56192										
WASF2	0	genome.wustl.edu	37	chr1	27745512	27745512	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgtagtcggtcgaccctctCagcaagggagcttacccgag	12	13	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	27745512	27745512	C	G	SNP	WASF2	ENST00000430629	human	ensembl	69_37n	-1	known	missense	c.208	p.E70Q	0.999	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF2	HGNC	ENSG00000158195	55	0	0	62	15	19.48	-	-	-	G	27745512	C	G	27745512	3	3	658	1	0	0	0	0	1	0	0	0	17350	835	29	2	1316	2	WASF2	1	27745512	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6695347	27745512	221505109	10	56193										
AHDC1	0	genome.wustl.edu	37	chr1	27878020	27878020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggggactgtccctaggctCaggctcaggctcgtagaggg	16	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	27878020	27878020	C	G	SNP	AHDC1	ENST00000247087	human	ensembl	69_37n	-1	known	missense	c.607	p.E203Q	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	29	0	0	17	9	34.62	-	-	-	G	27878020	C	G	27878020	3	3	658	1	0	0	0	0	1	0	0	0	412	835	29	2	4208	2	AHDC1	1	27878020	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	132508	27878020	221372601	11	56194										
PHACTR4	0	genome.wustl.edu	37	chr1	28764913	28764913	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcatgggacaagctgatgtCtccagaccggtaaatccaga	10	10	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	28764913	28764913	C	G	SNP	PHACTR4	ENST00000373836	human	ensembl	69_37n	1	known	silent	c.18	p.V6	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138	43	0	0	68	13	16.05	-	-	-	G	28764913	C	G	28764913	2	3	658	1	0	0	0	0	0	0	0	1	11886	900	32	2		2	PHACTR4	1	28764913	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	886893	28764913	220485708	12	56195										
CSMD2	0	genome.wustl.edu	37	chr1	34090797	34090797	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agaagtcactgcccagcctcTtgccatagcggggttccggc	12	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	34090797	34090797	T	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.5354	p.K1785M	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	19	0	0	14	6	30	-	-	-	A	34090797	T	A	34090797	3	1	658	1	0	0	0	0	1	0	0	0	3977	1609	56	5	5373	5	CSMD2	1	34090797	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	5325884	34090797	215159824	13	56196										
CSMD2	0	genome.wustl.edu	37	chr1	34204850	34204850	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccttcatcacagaggaaggaGatggagctgcccagctggag	14	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	34204850	34204850	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.2259	p.I753	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	22	0	0	29	7	19.44	-	-	-	A	34204850	G	A	34204850	2	1	658	1	0	0	0	0	0	0	0	1	3977	932	33	2		2	CSMD2	1	34204850	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	114053	34204850	215045771	14	56197										
ZNF643	0	genome.wustl.edu	37	chr1	40929184	40929184	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgattgtaatgagtgtggaAaagccttcagctgtagttca	11	5	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	40929184	40929184	A	G	SNP	ZNF643	ENST00000411995	human	ensembl	69_37n	1	known	missense	c.1528	p.K510E	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF643	HGNC	ENSG00000187801	16	0	0	28	11	28.21	-	-	-	G	40929184	A	G	40929184	3	3	658	1	0	0	0	0	1	0	0	0	18155	15	1	5	1546	5	ZNF643	1	40929184	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	6724334	40929184	208321437	15	56198										
KDM4A	0	genome.wustl.edu	37	chr1	44156660	44156660	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acctttctactccttatcttGaggaggatggcaccagcata	8	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	44156660	44156660	G	C	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.2182	p.E728Q	0.999	smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	34	0	0	57	13	18.57	-	-	-	C	44156660	G	C	44156660	3	2	658	1	0	0	0	0	1	0	0	0	8182	1291	45	2	2232	2	KDM4A	1	44156660	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3227476	44156660	205093961	16	56199										
PLK3	0	genome.wustl.edu	37	chr1	45266520	45266520	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccctcttcacaggggggcttCgcccgctgctacgaggccac	12	17	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	45266520	45266520	C	T	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	1	known	silent	c.219	p.F73	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	12	0	0	7	4	36.36	-	-	-	T	45266520	C	T	45266520	2	4	658	1	0	0	0	0	0	0	0	1	12171	883	31	1		1	PLK3	1	45266520	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1109860	45266520	203984101	17	56200										
BTBD19	0	genome.wustl.edu	37	chr1	45275974	45275974	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgcaacttcttccagcgacTtctgggcacagagccaggcc	10	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	45275974	45275974	T	G	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	1	known	missense	c.176	p.L59R	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD19	HGNC	ENSG00000222009	45	0	0	37	14	27.45	-	-	-	G	45275974	T	G	45275974	3	3	658	1	0	0	0	0	1	0	0	0	1551	1609	56	5	182	5	BTBD19	1	45275974	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	9454	45275974	203974647	18	56201										
CCDC17	0	genome.wustl.edu	37	chr1	46088486	46088486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagaataaagttctgcctctCgccgggagctcagcgggttc	13	11	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	46088486	46088486	C	T	SNP	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	missense	c.581	p.R194Q	0.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	14	0	0	18	6	25	-	-	-	T	46088486	C	T	46088486	3	4	658	1	0	0	0	0	1	0	0	0	2819	884	31	1	1227	1	CCDC17	1	46088486	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	812512	46088486	203162135	19	56202										
MAST2	0	genome.wustl.edu	37	chr1	46495164	46495164	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgtgtggcctgagggtgatGaggcactgcccccagacgcc	15	12	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	46495164	46495164	G	A	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.2245	p.E749K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	32	0	0	18	16	47.06	-	-	-	A	46495164	G	A	46495164	3	1	658	1	0	0	0	0	1	0	0	0	9396	1291	45	2	2319	2	MAST2	1	46495164	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	406678	46495164	202755457	20	56203										
TTC39A	0	genome.wustl.edu	37	chr1	51760099	51760099	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcgagatagggttggaggaGaagtagcgccgggacttccg	18	7	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	51760099	51760099	G	C	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	missense	c.1338	p.F446L	0.655	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	28	0	0	25	12	32.43	-	-	-	C	51760099	G	C	51760099	3	2	658	1	0	0	0	0	1	0	0	0	16804	933	33	2	523	2	TTC39A	1	51760099	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5264935	51760099	197490522	21	56204										
NRD1	0	genome.wustl.edu	37	chr1	52255313	52255313	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaggtctgattttgagaatGacttcagtgcttcaatctta	8	8	4	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	52255313	52255313	G	A	SNP	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	missense	c.3389	p.S1130L	0.988	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	NRD1	HGNC	ENSG00000078618	35	0	0	61	16	20.78	-	-	-	A	52255313	G	A	52255313	3	1	658	1	0	0	0	0	1	0	0	0	10718	1294	45	2	278	2	NRD1	1	52255313	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	495214	52255313	196995308	22	56205										
JUN	0	genome.wustl.edu	37	chr1	59247812	59247813	+	Frame_Shift_Del	DEL	TC	TC	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttaacgtggttcatgacttTctgtttaagctgtgccacct							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	59247812	59247813	TC	-	DEL	JUN	ENST00000371222	human	ensembl	69_37n	-1	known	frame_shift_del	c.931_930	p.K311fs	1.000:1.000	pfam_bZIP_1,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	pfam_JNK,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUN	HGNC	ENSG00000177606	29	0	0	41	25	37.88	-	-	-	-	59247813	TC	-	59247812	7	5	658	1	0	1	0	1	0	0	0	0	8023	1792	62	0	68	0	JUN	1	59247812	Frame_Shift_Del	DEL	TC	TCGA-C8-A26Y-01A-11D-A16D-09	6992499	59247812	190002809	23	56206										
ITGB3BP	0	genome.wustl.edu	37	chr1	63944439	63944439	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaaataacaaacttactcatCattgtcttttgttgtagatt	4	6	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	63944439	63944439	C	A	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	missense	c.367	p.D123Y	0.996	pfam_NRIF3_coact_rcpt	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	139	0	0	195	44	18.33	-	-	-	A	63944439	C	A	63944439	3	1	658	1	0	0	0	0	1	0	0	0	7950	826	29	2	303	2	ITGB3BP	1	63944439	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4696627	63944439	185306182	24	56207										
SSX2IP	0	genome.wustl.edu	37	chr1	85135517	85135517	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctactatatttaactctctCtttgtctctttacctttgga	4	10	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	85135517	85135517	C	G	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	missense	c.273	p.K91N	1.000	pfam_Afadin/alpha-actinin-bd	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	98	0	0	142	27	15.98	-	-	-	G	85135517	C	G	85135517	3	3	658	1	0	0	0	0	1	0	0	0	15295	912	32	2	1615	2	SSX2IP	1	85135517	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	21191078	85135517	164115104	25	56208										
SYDE2	0	genome.wustl.edu	37	chr1	85647955	85647955	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgttccataagagtcactttCacataaataagacctctagg	6	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	85647955	85647955	C	G	SNP	SYDE2	ENST00000341460	human	ensembl	69_37n	-1	known	silent	c.2370	p.V790	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096	51	0	0	48	40	44.94	-	-	-	G	85647955	C	G	85647955	2	3	658	1	0	0	0	0	0	0	0	1	15528	813	29	2		2	SYDE2	1	85647955	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	512438	85647955	163602666	26	56209										
CLCA2	0	genome.wustl.edu	37	chr1	86894140	86894140	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	actggtatggggcacatggaGatgatccatacaccctacaa	10	10	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	86894140	86894140	G	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	missense	c.364	p.D122N	0.998	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	34	0	0	53	11	17.19	-	-	-	A	86894140	G	A	86894140	3	1	658	1	0	0	0	0	1	0	0	0	3488	942	33	2	374	2	CLCA2	1	86894140	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1246185	86894140	162356481	27	56210										
PKN2	0	genome.wustl.edu	37	chr1	89294223	89294223	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctcctgaatttcttgccccaGaagtattaacagaaacttct	5	11	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	89294223	89294223	G	A	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	missense	c.2479	p.E827K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	63	0	0	71	30	29.13	-	-	-	A	89294223	G	A	89294223	3	1	658	1	0	0	0	0	1	0	0	0	12054	943	33	2	2553	2	PKN2	1	89294223	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2400083	89294223	159956398	28	56211										
GFI1	0	genome.wustl.edu	37	chr1	92948572	92948572	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacaaacggtcccggggctcCgccttcgccccgcctgcatt	11	18	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	92948572	92948572	C	T	SNP	GFI1	ENST00000294702	human	ensembl	69_37n	-1	known	silent	c.147	p.A49	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1	HGNC	ENSG00000162676	26	0	0	18	6	25	-	-	-	T	92948572	C	T	92948572	2	4	658	1	0	0	0	0	0	0	0	1	6391	639	23	1		1	GFI1	1	92948572	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3654349	92948572	156302049	29	56212										
FNBP1L	0	genome.wustl.edu	37	chr1	93998592	93998592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcaaaatgtttggaaggaatGattcttgcagcaaaatcagt	9	5	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	93998592	93998592	G	C	SNP	FNBP1L	ENST00000271234	human	ensembl	69_37n	1	known	missense	c.753	p.M251I	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942	19	0	0	25	11	30.56	-	-	-	C	93998592	G	C	93998592	3	2	658	1	0	0	0	0	1	0	0	0	6012	1290	45	2	783	2	FNBP1L	1	93998592	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1050020	93998592	155252029	30	56213										
SNX7	0	genome.wustl.edu	37	chr1	99150551	99150551	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccagatttaaaggatctcttCatcacagttgatgaacctga	7	9	3	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	99150551	99150551	C	A	SNP	SNX7	ENST00000306121	human	ensembl	69_37n	1	known	missense	c.291	p.F97L	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	44	0	0	46	17	26.98	-	-	-	A	99150551	C	A	99150551	3	1	658	1	0	0	0	0	1	0	0	0	14996	825	29	2	297	2	SNX7	1	99150551	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5151959	99150551	150100070	31	56214										
PALMD	0	genome.wustl.edu	37	chr1	100159585	100159585	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taatttgcagctttaaggatGagaatggcaaagctgggaaa	12	4	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	100159585	100159585	G	T	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	1	known	missense	c.1623	p.M541I	1.000	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	22	0	0	32	9	21.95	-	-	-	T	100159585	G	T	100159585	3	4	658	1	0	0	0	0	1	0	0	0	11484	1290	45	2	1653	2	PALMD	1	100159585	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1009034	100159585	149091036	32	56215										
SASS6	0	genome.wustl.edu	37	chr1	100550983	100550983	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctcctaaagtgccatctctCtgatggtctgcaaatgagga	10	10	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	100550983	100550983	C	T	SNP	SASS6	ENST00000287482	human	ensembl	69_37n	-1	known	silent	c.1875	p.Q625	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876	50	0	0	51	24	32	-	-	-	T	100550983	C	T	100550983	2	4	658	1	0	0	0	0	0	0	0	1	13937	912	32	2		2	SASS6	1	100550983	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	391398	100550983	148699638	33	56216										
AMIGO1	0	genome.wustl.edu	37	chr1	110050164	110050164	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcagggtgttgcctggcttGagcttgccgttttgaccctg	15	10	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	110050164	110050164	G	C	SNP	AMIGO1	ENST00000369862	human	ensembl	69_37n	-1	known	silent	c.1371	p.L457	0.980	NULL	pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMIGO1	HGNC	ENSG00000181754	22	0	0	16	5	23.81	-	-	-	C	110050164	G	C	110050164	2	2	658	1	0	0	0	0	0	0	0	1	575	1277	45	2		2	AMIGO1	1	110050164	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9499181	110050164	139200457	34	56217										
DDX20	0	genome.wustl.edu	37	chr1	112309444	112309444	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attcatattattggaatgctCagagacatccaagttggatg	9	6	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	112309444	112309444	C	G	SNP	DDX20	ENST00000369702	human	ensembl	69_37n	1	known	missense	c.2398	p.Q800E	0.873	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703	21	0	0	17	6	26.09	-	-	-	G	112309444	C	G	112309444	3	3	658	1	0	0	0	0	1	0	0	0	4379	827	29	2	2440	2	DDX20	1	112309444	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2259280	112309444	136941177	35	56218										
CSDE1	0	genome.wustl.edu	37	chr1	115284172	115284172	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctctgataagttggggtcctCttttgttttttagtcccaga	9	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	115284172	115284172	C	G	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.114	p.K38N	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	88	0	0	70	23	24.73	-	-	-	G	115284172	C	G	115284172	3	3	658	1	0	0	0	0	1	0	0	0	3961	912	32	2	2496	2	CSDE1	1	115284172	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2974728	115284172	133966449	36	56219										
PDE4DIP	0	genome.wustl.edu	37	chr1	144855784	144855784	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgggtgcttggcagggccgCtctccagaacatggtgagga	17	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	144855784	144855784	C	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.6769	p.A2257S	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	33	0	0	48	9	15.79	-	-	-	A	144855784	C	A	144855784	3	1	658	1	0	0	0	0	1	0	0	0	11716	797	28	4	287	4	PDE4DIP	1	144855784	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	29571612	144855784	104394837	37	56220										
PDE4DIP	0	genome.wustl.edu	37	chr1	144923812	144923812	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgttgtttcagcaactcttCagtcatgggctaggaagaaa	10	7	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	144923812	144923812	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.646	p.E216K	0.739	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	134	0	0	189	41	17.67	-	-	-	T	144923812	C	T	144923812	3	4	658	1	0	0	0	0	1	0	0	0	11716	835	29	2	6560	2	PDE4DIP	1	144923812	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	68028	144923812	104326809	38	56221										
CA14	0	genome.wustl.edu	37	chr1	150235209	150235209	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccttctcttccaggtgggtGagactaagaatatagcttat	9	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	150235209	150235209	G	A	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	missense	c.502	p.E168K	0.892	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	24	0	0	35	16	31.37	-	-	-	A	150235209	G	A	150235209	3	1	658	1	0	0	0	0	1	0	0	0	2540	1291	45	2	524	2	CA14	1	150235209	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5311397	150235209	99015412	39	56222										
APH1A	0	genome.wustl.edu	37	chr1	150241120	150241120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcgaccaggatgataacgcGaagcgggtccccagccacag	13	13	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	150241120	150241120	G	A	SNP	APH1A	ENST00000369109	human	ensembl	69_37n	-1	known	missense	c.91	p.R31C	1.000	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1A	HGNC	ENSG00000117362	18	0	0	14	15	51.72	-	-	-	A	150241120	G	A	150241120	3	1	658	1	0	0	0	0	1	0	0	0	772	1058	37	1	745	1	APH1A	1	150241120	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5911	150241120	99009501	40	56223										
PIP5K1A	0	genome.wustl.edu	37	chr1	151214625	151214625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttctccttccaaaaagtttCggtctggctcatctttctct	5	13	5	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	151214625	151214625	C	T	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	missense	c.1390	p.R464W	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	43	0	0	45	23	33.82	-	-	-	T	151214625	C	T	151214625	3	4	658	1	0	0	0	0	1	0	0	0	12013	875	31	1	1440	1	PIP5K1A	1	151214625	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	973505	151214625	98035996	41	56224										
TDRD10	0	genome.wustl.edu	37	chr1	154516499	154516499	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacctgagctggctggcactCatccatagcgtccgtgggga	14	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	154516499	154516499	C	G	SNP	TDRD10	ENST00000368480	human	ensembl	69_37n	1	known	silent	c.564	p.L188	0.004	NULL	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239	70	0	0	65	29	30.53	-	-	-	G	154516499	C	G	154516499	2	3	658	1	0	0	0	0	0	0	0	1	15826	813	29	2		2	TDRD10	1	154516499	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3301874	154516499	94734122	42	56225										
UBE2Q1	0	genome.wustl.edu	37	chr1	154527994	154527994	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggtcggagatgatcctcttCagatgctgcaatagctacag	11	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	154527994	154527994	C	G	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	silent	c.447	p.L149	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	34	0	0	37	38	50.67	-	-	-	G	154527994	C	G	154527994	2	3	658	1	0	0	0	0	0	0	0	1	16966	813	29	2		2	UBE2Q1	1	154527994	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	11495	154527994	94722627	43	56226										
SYT11	0	genome.wustl.edu	37	chr1	155851240	155851240	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtggtgctgaacactggagaGaggtctgcgagagcccccgc	16	11	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	155851240	155851240	G	A	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.1237	p.E413K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	21	0	0	22	18	45	-	-	-	A	155851240	G	A	155851240	3	1	658	1	0	0	0	0	1	0	0	0	15559	943	33	2	1251	2	SYT11	1	155851240	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1323246	155851240	93399381	44	56227										
SPTA1	0	genome.wustl.edu	37	chr1	158585180	158585180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacgcttcatcgcctggatcTccttctgttttctctggaaa	8	12	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	158585180	158585180	T	C	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6614	p.E2205G	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	24	0	0	52	8	13.11	-	-	-	C	158585180	T	C	158585180	3	2	658	1	0	0	0	0	1	0	0	0	15207	1551	54	5	665	5	SPTA1	1	158585180	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	2733940	158585180	90665441	45	56228										
OR10J3	0	genome.wustl.edu	37	chr1	159283665	159283665	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggaactctgggacttaggcTtcaggtagatgatggaggca	16	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	159283665	159283665	T	G	SNP	OR10J3	ENST00000332217	human	ensembl	69_37n	-1	known	missense	c.785	p.K262T	1.000	pfam_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266	48	0	0	78	15	15.79	-	-	-	G	159283665	T	G	159283665	3	3	658	1	0	0	0	0	1	0	0	0	10984	1609	56	5	206	5	OR10J3	1	159283665	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	698485	159283665	89966956	46	56229										
VANGL2	0	genome.wustl.edu	37	chr1	160389350	160389350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctcagttcacgctcaaggtcGtgcgctccaccgacggcgcc	11	17	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	160389350	160389350	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.751	p.V251M	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	24	0	0	22	12	34.29	-	-	-	A	160389350	G	A	160389350	3	1	658	1	0	0	0	0	1	0	0	0	17217	1145	40	1	761	1	VANGL2	1	160389350	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1105685	160389350	88861271	47	56230										
C1orf192	0	genome.wustl.edu	37	chr1	161335346	161335346	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atttcaggacacagcccattGgaggccttgagtaaatcagg	11	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	161335346	161335346	G	T	SNP	C1orf192	ENST00000367974	human	ensembl	69_37n	-1	known	silent	c.318	p.S106	1.000	NULL	NULL	-	no_errors	C1orf192	HGNC	ENSG00000188931	29	0	0	52	8	13.33	-	-	-	T	161335346	G	T	161335346	2	4	658	1	0	0	0	0	0	0	0	1	2043	1335	47	4		4	C1orf192	1	161335346	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	945996	161335346	87915275	48	56231										
MPZL1	0	genome.wustl.edu	37	chr1	167741609	167741609	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccttgacaagaaagatgcatCaatcaacatagaaaatatgc	6	8	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	167741609	167741609	C	A	SNP	MPZL1	ENST00000359523	human	ensembl	69_37n	1	known	nonsense	c.356	p.S119*	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL1	HGNC	ENSG00000197965	50	0	0	39	35	47.3	-	-	-	A	167741609	C	A	167741609	4	1	658	1	0	0	0	0	0	1	0	0	9821	838	29	2	366	2	MPZL1	1	167741609	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6406263	167741609	81509012	49	56232										
PAPPA2	0	genome.wustl.edu	37	chr1	176740240	176740240	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	actgcctccaggacaaccacGacgtgggcaccatctgcaaa	9	15	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	176740240	176740240	G	C	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.4639	p.D1547H	0.940	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	51	0	0	53	46	46.46	-	-	-	C	176740240	G	C	176740240	3	2	658	1	0	0	0	0	1	0	0	0	11506	1058	37	3	4754	3	PAPPA2	1	176740240	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8998631	176740240	72510381	50	56233										
CEP350	0	genome.wustl.edu	37	chr1	180003096	180003096	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacgttgcaggaacttcttcAgaaagatctaagtcgtcagt	10	8	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	180003096	180003096	A	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	silent	c.3825	p.S1275	0.449	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	40	0	0	92	13	12.38	-	-	-	G	180003096	A	G	180003096	2	3	658	1	0	0	0	0	0	0	0	1	3283	175	7	5		5	CEP350	1	180003096	Silent	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	3262856	180003096	69247525	51	56234										
STX6	0	genome.wustl.edu	37	chr1	180974600	180974600	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgactgctttctgtacctctCtgtaatcaagatgaggcaaa	8	9	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	180974600	180974600	C	G	SNP	STX6	ENST00000258301	human	ensembl	69_37n	-1	known	splice_site	c.36-1	e2-1	1.000	-	-	-	no_errors	STX6	HGNC	ENSG00000135823	58	0	0	96	47	32.64	-	-	-	G	180974600	C	G	180974600	5	3	658	1	0	0	0	0	0	0	1	0	15440	927	32	2	760	2	STX6	1	180974600	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	971504	180974600	68276021	52	56235										
LAMC2	0	genome.wustl.edu	37	chr1	183191238	183191238	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttccagatgttgatggctggAaggctgtccaacgaaatggg	14	7	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	183191238	183191238	A	G	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.655	p.K219E	1.000	superfamily_Growth_fac_rcpt,pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	58	0	0	108	20	15.5	-	-	-	G	183191238	A	G	183191238	3	3	658	1	0	0	0	0	1	0	0	0	8669	247	9	5	677	5	LAMC2	1	183191238	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2216638	183191238	66059383	53	56236										
EDEM3	0	genome.wustl.edu	37	chr1	184680990	184680990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaatcgaagttactgtcatCcagttctgtatattccgagg	8	10	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	184680990	184680990	C	A	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.1558	p.D520Y	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	40	0	0	67	26	27.96	-	-	-	A	184680990	C	A	184680990	3	1	658	1	0	0	0	0	1	0	0	0	4948	855	30	2	1264	2	EDEM3	1	184680990	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1489752	184680990	64569631	54	56237										
ASPM	0	genome.wustl.edu	37	chr1	197061148	197061148	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgataatatgcagctgcagtGaagtgaagaagtcgaatttt	11	4	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	197061148	197061148	G	A	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.9333	p.F3111	0.759	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	41	0	0	69	51	42.5	-	-	-	A	197061148	G	A	197061148	2	1	658	1	0	0	0	0	0	0	0	1	1060	1281	45	2		2	ASPM	1	197061148	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	12380158	197061148	52189473	55	56238										
KDM5B	0	genome.wustl.edu	37	chr1	202718234	202718234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acaatatcgatgaagcaagcGataatgctccacacactgtc	7	11	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	202718234	202718234	G	A	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.1855	p.R619C	0.997	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	34	0	0	67	31	31.63	-	-	-	A	202718234	G	A	202718234	3	1	658	1	0	0	0	0	1	0	0	0	8187	1058	37	1	2835	1	KDM5B	1	202718234	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5657086	202718234	46532387	56	56239										
FAM72A	0	genome.wustl.edu	37	chr1	206154007	206154007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagagatagaagagagtacaGatgaagatgtgttaaatatc	11	3	0	6			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	206154007	206154007	G	A	SNP	FAM72A	ENST00000367128	human	ensembl	69_37n	1	known	missense	c.406	p.D136N	1.000	NULL	NULL	-	no_errors	FAM72A	HGNC	ENSG00000196550	88	0	0	256	82	24.12	-	-	-	A	206154007	G	A	206154007	3	1	658	1	0	0	0	0	1	0	0	0	5659	942	33	2	420	2	FAM72A	1	206154007	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3435773	206154007	43096614	57	56240										
IKBKE	0	genome.wustl.edu	37	chr1	206658611	206658611	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcctgaaccgggagctggtGaagagccgggatcaggtaca	16	9	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	206658611	206658611	G	A	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	silent	c.1584	p.V528	0.921	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	30	0	0	62	8	11.43	-	-	-	A	206658611	G	A	206658611	2	1	658	1	0	0	0	0	0	0	0	1	7666	1277	45	2		2	IKBKE	1	206658611	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	504604	206658611	42592010	58	56241										
RASSF5	0	genome.wustl.edu	37	chr1	206760244	206760244	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaaatccaacaagtgcaaaaGaagtatgacaagtttaggca	8	6	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	206760244	206760244	G	C	SNP	RASSF5	ENST00000355294	human	ensembl	69_37n	1	known	missense	c.1191	p.K397N	1.000	pfscan_SARAH	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF5	HGNC	ENSG00000136653	46	0	0	150	24	13.79	-	-	-	C	206760244	G	C	206760244	3	2	658	1	0	0	0	0	1	0	0	0	13172	933	33	2	1337	2	RASSF5	1	206760244	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	101633	206760244	42490377	59	56242										
CD34	0	genome.wustl.edu	37	chr1	208062855	208062855	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagacactgaggcctcacctCagactgggcaaggagcaggg	14	11	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	208062855	208062855	C	T	SNP	CD34	ENST00000310833	human	ensembl	69_37n	-1	known	missense	c.709	p.E237K	0.991	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	38	0	0	70	8	10.26	-	-	-	T	208062855	C	T	208062855	3	4	658	1	0	0	0	0	1	0	0	0	3035	835	29	2	483	2	CD34	1	208062855	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1302611	208062855	41187766	60	56243										
USH2A	0	genome.wustl.edu	37	chr1	216373463	216373463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtctaagaagtattgaataCctgaaatgaaaagaaaaaaa	7	3	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	216373463	216373463	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3317	p.S1106N	0.025	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	12	0	0	12	11	47.83	-	-	-	T	216373463	C	T	216373463	3	4	658	1	0	0	0	0	1	0	0	0	17133	521	18	4	12529	4	USH2A	1	216373463	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8310608	216373463	32877158	61	56244										
SPATA17	0	genome.wustl.edu	37	chr1	217947774	217947774	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acacaccgaagacctaaagtTaagcagaaggactccaccag	8	12	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	217947774	217947774	T	G	SNP	SPATA17	ENST00000366933	human	ensembl	69_37n	1	known	silent	c.618	p.V206	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814	37	0	0	32	17	34.69	-	-	-	G	217947774	T	G	217947774	2	3	658	1	0	0	0	0	0	0	0	1	15093	1741	61	5		5	SPATA17	1	217947774	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1574311	217947774	31302847	62	56245										
SUSD4	0	genome.wustl.edu	37	chr1	223438151	223438151	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cattagaagaggctagaggtCtcaggcagcctgtggaaggt	15	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	223438151	223438151	C	G	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.545	p.R182T	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	29	0	0	13	23	62.16	-	-	-	G	223438151	C	G	223438151	3	3	658	1	0	0	0	0	1	0	0	0	15501	913	32	2	1100	2	SUSD4	1	223438151	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5490377	223438151	25812470	63	56246										
PARP1	0	genome.wustl.edu	37	chr1	226566885	226566885	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaagctgcagcttgtagtagGagttggttcctttaacgatg	13	6	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	1	226566885	226566885	G	C	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.1703	p.S568C	1.000	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain,pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	73	0	0	27	35	56.45	-	-	-	C	226566885	G	C	226566885	3	2	658	1	0	0	0	0	1	0	0	0	11527	1174	41	2	1389	2	PARP1	1	226566885	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3128734	226566885	22683736	64	56247										
NBAS	0	genome.wustl.edu	37	chr2	15432698	15432698	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtttcccttttatactggtCatctgcagtaaaccgctgca	7	11	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	15432698	15432698	C	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.4990	p.D1664N	0.243	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	36	0	0	44	13	22.81	-	-	-	T	15432698	C	T	15432698	3	4	658	1	0	0	0	0	1	0	0	0	10258	826	29	2	2173	2	NBAS	2	15432698	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		15432698	227766675	65	56248										
LAPTM4A	0	genome.wustl.edu	37	chr2	20234122	20234122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtacacagcaatctccggcaCgtttcggttgttgatgtatt	10	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	20234122	20234122	C	T	SNP	LAPTM4A	ENST00000175091	human	ensembl	69_37n	-1	known	missense	c.583	p.V195M	0.994	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	-	no_errors	LAPTM4A	HGNC	ENSG00000068697	25	0	0	42	21	33.33	-	-	-	T	20234122	C	T	20234122	3	4	658	1	0	0	0	0	1	0	0	0	8678	536	19	1	126	1	LAPTM4A	2	20234122	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4801424	20234122	222965251	66	56249										
ATAD2B	0	genome.wustl.edu	37	chr2	24046241	24046241	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttatgatgggggatagtgcaTgccctgaagacatcacagca	12	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	24046241	24046241	T	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.2018	p.H673L	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	41	0	0	47	17	26.56	-	-	-	A	24046241	T	A	24046241	3	1	658	1	0	0	0	0	1	0	0	0	1076	1464	51	5	2410	5	ATAD2B	2	24046241	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	3812119	24046241	219153132	67	56250										
ITSN2	0	genome.wustl.edu	37	chr2	24535095	24535095	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acttaccaaaacgagcagaaAttaatggagaaaacataggg	9	6	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	24535095	24535095	A	T	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.338	p.I113N	0.989	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	43	0	0	109	19	14.73	-	-	-	T	24535095	A	T	24535095	3	4	658	1	0	0	0	0	1	0	0	0	7981	101	4	5	4950	5	ITSN2	2	24535095	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	488854	24535095	218664278	68	56251										
ASXL2	0	genome.wustl.edu	37	chr2	25965240	25965240	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctctatagcttggccctatCtgggtggggcttccatacaa	10	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	25965240	25965240	C	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	silent	c.3966	p.Q1322	0.979	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	20	0	0	17	6	26.09	-	-	-	T	25965240	C	T	25965240	2	4	658	1	0	0	0	0	0	0	0	1	1071	912	32	2		2	ASXL2	2	25965240	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1430145	25965240	217234133	69	56252										
EIF2B4	0	genome.wustl.edu	37	chr2	27591902	27591902	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttctccagctgtgctggggCtggccttaggaggtggtcct	15	10	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	27591902	27591902	C	G	SNP	EIF2B4	ENST00000347454	human	ensembl	69_37n	-1	known	missense	c.389	p.S130T	0.961	NULL	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211	29	0	0	50	13	20.63	-	-	-	G	27591902	C	G	27591902	3	3	658	1	0	0	0	0	1	0	0	0	5038	797	28	4	1222	4	EIF2B4	2	27591902	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1626662	27591902	215607471	70	56253										
NRBP1	0	genome.wustl.edu	37	chr2	27664625	27664625	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaagagaccttgaacaagttCaattttgccaggaacagtac	9	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	27664625	27664625	C	T	SNP	NRBP1	ENST00000233557	human	ensembl	69_37n	1	known	silent	c.1554	p.F518	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	49	0	0	62	49	43.75	-	-	-	T	27664625	C	T	27664625	2	4	658	1	0	0	0	0	0	0	0	1	10715	825	29	2		2	NRBP1	2	27664625	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	72723	27664625	215534748	71	56254										
SPDYA	0	genome.wustl.edu	37	chr2	29063329	29063329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttctcaagcttatactggtTctgaaggtatgatttagtaa	8	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	29063329	29063329	T	C	SNP	SPDYA	ENST00000334056	human	ensembl	69_37n	1	known	missense	c.844	p.S282P	0.884	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYA	HGNC	ENSG00000163806	22	0	0	43	13	23.21	-	-	-	C	29063329	T	C	29063329	3	2	658	1	0	0	0	0	1	0	0	0	15118	1783	62	5	862	5	SPDYA	2	29063329	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1398704	29063329	214136044	72	56255										
THADA	0	genome.wustl.edu	37	chr2	43813569	43813569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccaggatttcaattaaactCttctgcagaaaatgaagcac	6	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	43813569	43813569	C	G	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.504	p.K168N	1.000	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	50	0	0	98	32	24.43	-	-	-	G	43813569	C	G	43813569	3	3	658	1	0	0	0	0	1	0	0	0	15935	912	32	2	5485	2	THADA	2	43813569	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	14750240	43813569	199385804	73	56256										
PSME4	0	genome.wustl.edu	37	chr2	54150229	54150229	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcagcagtggggaacaaaGagcttcaaagattcttctgg	12	8	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	54150229	54150229	G	C	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	silent	c.1935	p.L645	0.078	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	38	0	0	61	30	32.97	-	-	-	C	54150229	G	C	54150229	2	2	658	1	0	0	0	0	0	0	0	1	12789	929	33	2		2	PSME4	2	54150229	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	10336660	54150229	189049144	74	56257										
USP34	0	genome.wustl.edu	37	chr2	61456067	61456067	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ataattaataacagggttctCacaaagcgagtgacacatga	8	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	61456067	61456067	C	T	SNP	USP34	ENST00000411912	human	ensembl	69_37n	-1	novel	missense	c.541	p.E181K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP34	HGNC	ENSG00000115464	41	0	0	56	57	50	-	-	-	T	61456067	C	T	61456067	3	4	658	1	0	0	0	0	1	0	0	0	17162	813	29	2	3461	2	USP34	2	61456067	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7305838	61456067	181743306	75	56258										
XPO1	0	genome.wustl.edu	37	chr2	61726027	61726027	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aactgacacagttgaaatatCtgtgagaattcattgcacat	7	7	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	61726027	61726027	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	silent	c.612	p.Q204	0.653	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	31	0	0	52	17	24.29	-	-	-	T	61726027	C	T	61726027	2	4	658	1	0	0	0	0	0	0	0	1	17542	912	32	2		2	XPO1	2	61726027	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	269960	61726027	181473346	76	56259										
UGP2	0	genome.wustl.edu	37	chr2	64084985	64084985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caccaaaaaagacctggatgGatttcggaagctatttcata	8	8	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	64084985	64084985	G	A	SNP	UGP2	ENST00000337130	human	ensembl	69_37n	1	known	missense	c.170	p.G57E	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764	43	0	0	51	36	41.38	-	-	-	A	64084985	G	A	64084985	3	1	658	1	0	0	0	0	1	0	0	0	17040	1174	41	2	180	2	UGP2	2	64084985	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2358958	64084985	179114388	77	56260										
ETAA1	0	genome.wustl.edu	37	chr2	67624583	67624583	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggaggcgggccataggcaatGagtcggcgaaggaaacatga	17	7	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	67624583	67624583	G	C	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	9	0	0	14	12	46.15	-	-	-	C	67624583	G	C	67624583	3	2	658	1	0	0	0	0	1	0	0	0	5304	1290	45	2	5	2	ETAA1	2	67624583	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3539598	67624583	175574790	78	56261										
ETAA1	0	genome.wustl.edu	37	chr2	67630796	67630796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggagaaaatcattactaatGaaactctggtcattgaaaaa	7	5	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	67630796	67630796	G	A	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	1	known	missense	c.982	p.E328K	0.158	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	23	0	0	29	23	43.4	-	-	-	A	67630796	G	A	67630796	3	1	658	1	0	0	0	0	1	0	0	0	5304	1291	45	2	1000	2	ETAA1	2	67630796	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6213	67630796	175568577	79	56262										
AAK1	0	genome.wustl.edu	37	chr2	69746260	69746260	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtagaaggcgtctgctgtggAgtgggaggagcctgtggctg	20	6	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	69746260	69746260	A	G	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	silent	c.1323	p.T441	0.134	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	67	0	0	155	25	13.89	-	-	-	G	69746260	A	G	69746260	2	3	658	1	0	0	0	0	0	0	0	1	16	291	11	5		5	AAK1	2	69746260	Silent	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2115464	69746260	173453113	80	56263										
CYP26B1	0	genome.wustl.edu	37	chr2	72362039	72362039	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcaggatctgccgagcctGaatgccctgcagaggtgagg	15	11	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	72362039	72362039	G	C	SNP	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	missense	c.712	p.Q238E	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	32	0	0	33	27	45	-	-	-	C	72362039	G	C	72362039	3	2	658	1	0	0	0	0	1	0	0	0	4187	1299	45	2	838	2	CYP26B1	2	72362039	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2615779	72362039	170837334	81	56264										
C2orf78	0	genome.wustl.edu	37	chr2	74043812	74043812	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctacaaaacatcatcttgttCttctctgcagcgggagcctg	8	12	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	74043812	74043812	C	T	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.2462	p.S821F	0.002	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	45	0	0	40	45	52.94	-	-	-	T	74043812	C	T	74043812	3	4	658	1	0	0	0	0	1	0	0	0	2215	913	32	2	2472	2	C2orf78	2	74043812	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1681773	74043812	169155561	82	56265										
DGUOK	0	genome.wustl.edu	37	chr2	74184263	74184263	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcttttaggtttgtttgaaGagactgtaccagagggccag	13	6	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	74184263	74184263	G	C	SNP	DGUOK	ENST00000264093	human	ensembl	69_37n	1	known	missense	c.603	p.K201N	1.000	pfam_Deoxynucleoside_kinase	pfam_Deoxynucleoside_kinase	-	no_errors	DGUOK	HGNC	ENSG00000114956	31	0	0	54	26	32.5	-	-	-	C	74184263	G	C	74184263	3	2	658	1	0	0	0	0	1	0	0	0	4511	933	33	2	621	2	DGUOK	2	74184263	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	140451	74184263	169015110	83	56266										
HTRA2	0	genome.wustl.edu	37	chr2	74758059	74758059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcctctccccacgctgcctCtgggacgctcagctgatgtc	10	17	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	74758059	74758059	C	T	SNP	HTRA2	ENST00000258080	human	ensembl	69_37n	1	known	silent	c.733	p.L245	0.994	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_PDZ,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA2	HGNC	ENSG00000115317	26	0	0	21	19	46.34	-	-	-	T	74758059	C	T	74758059	2	4	658	1	0	0	0	0	0	0	0	1	7508	912	32	2		2	HTRA2	2	74758059	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	573796	74758059	168441314	84	56267										
EIF5B	0	genome.wustl.edu	37	chr2	99998687	99998687	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	actcctgggcatgaatctttCaggtaagagcaatttgagtc	10	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	99998687	99998687	C	T	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	silent	c.2127	p.F709	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	77	0	0	115	59	33.91	-	-	-	T	99998687	C	T	99998687	2	4	658	1	0	0	0	0	0	0	0	1	5081	825	29	2		2	EIF5B	2	99998687	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	25240628	99998687	143200686	85	56268										
AFF3	0	genome.wustl.edu	37	chr2	100623122	100623122	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcttggggatgctgaacttgGagagcttggccttggctctg	16	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	100623122	100623122	G	C	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.920	p.S307C	0.983	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	23	0	0	25	23	46.94	-	-	-	C	100623122	G	C	100623122	3	2	658	1	0	0	0	0	1	0	0	0	358	1174	41	2	2911	2	AFF3	2	100623122	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	624435	100623122	142576251	86	56269										
GCC2	0	genome.wustl.edu	37	chr2	109086943	109086943	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgggaagacttagagtttaaAattaatgaattattactagc	8	4	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	109086943	109086943	A	T	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.1158	p.K386N	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	22	0	0	19	11	36.67	-	-	-	T	109086943	A	T	109086943	3	4	658	1	0	0	0	0	1	0	0	0	6336	11	1	5	1180	5	GCC2	2	109086943	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	8463821	109086943	134112430	87	56270										
FMNL2	0	genome.wustl.edu	37	chr2	153473673	153473673	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtggaactggaaaagcaactCatgcagaggaacaaggagct	13	7	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	153473673	153473673	C	G	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	silent	c.1281	p.L427	0.998	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	41	0	0	53	34	39.08	-	-	-	G	153473673	C	G	153473673	2	3	658	1	0	0	0	0	0	0	0	1	5998	813	29	2		2	FMNL2	2	153473673	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	44386730	153473673	89725700	88	56271										
GALNT5	0	genome.wustl.edu	37	chr2	158114646	158114646	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgggcgagtcttggcatttAtctttgtagcttctgtcatc	11	8	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	158114646	158114646	A	C	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.52	p.I18L	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	57	0	0	50	20	28.57	-	-	-	C	158114646	A	C	158114646	3	2	658	1	0	0	0	0	1	0	0	0	6266	449	16	5	54	5	GALNT5	2	158114646	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4640973	158114646	85084727	89	56272										
BAZ2B	0	genome.wustl.edu	37	chr2	160206643	160206643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggtcataacctctgactcaGgaggcatcttagctacttcc	9	12	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	160206643	160206643	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.4439	p.P1480L	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	36	0	0	42	27	39.13	-	-	-	A	160206643	G	A	160206643	3	1	658	1	0	0	0	0	1	0	0	0	1336	1000	35	4	2107	4	BAZ2B	2	160206643	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2091997	160206643	82992730	90	56273										
DPP4	0	genome.wustl.edu	37	chr2	162879266	162879266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacaacttataacacttactCttccaacccagccagtagta	3	14	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	162879266	162879266	C	T	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.1067	p.R356K	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	82	0	0	78	53	40.15	-	-	-	T	162879266	C	T	162879266	3	4	658	1	0	0	0	0	1	0	0	0	4764	927	32	2	1293	2	DPP4	2	162879266	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2672623	162879266	80320107	91	56274										
CSRNP3	0	genome.wustl.edu	37	chr2	166532849	166532849	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agaatggcacagtagaatcaGaagaagccagcactcttaca	9	9	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	166532849	166532849	G	C	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	missense	c.436	p.E146Q	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	26	0	0	28	19	40.43	-	-	-	C	166532849	G	C	166532849	3	2	658	1	0	0	0	0	1	0	0	0	3997	943	33	2	446	2	CSRNP3	2	166532849	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3653583	166532849	76666524	92	56275										
XIRP2	0	genome.wustl.edu	37	chr2	168106123	168106123	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcaatctgagattgatgttCaaacctttaccaaaaaacaa	5	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	168106123	168106123	C	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.8221	p.Q2741E	0.711	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	30	0	0	40	12	23.08	-	-	-	G	168106123	C	G	168106123	3	3	658	1	0	0	0	0	1	0	0	0	17527	827	29	2	8251	2	XIRP2	2	168106123	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1573274	168106123	75093250	93	56276										
ZAK	0	genome.wustl.edu	37	chr2	173955864	173955864	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtgtttatcgagccaaatgGatatcacaggacaaggaggt	12	6	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	173955864	173955864	G	A	SNP	ZAK	ENST00000375213	human	ensembl	69_37n	1	known	nonsense	c.105	p.W35*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	38	0	0	51	12	19.05	-	-	-	A	173955864	G	A	173955864	4	1	658	1	0	0	0	0	0	1	0	0	17609	1183	41	2	107	2	ZAK	2	173955864	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5849741	173955864	69243509	94	56277										
HOXD3	0	genome.wustl.edu	37	chr2	177033861	177033861	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caatgttatttgagcagggtCagcaggccctggagcttcct	12	10	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	177033861	177033861	C	T	SNP	HOXD3	ENST00000249440	human	ensembl	69_37n	1	known	nonsense	c.19	p.Q7*	0.999	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652	27	0	0	35	6	14.63	-	-	-	T	177033861	C	T	177033861	4	4	658	1	0	0	0	0	0	1	0	0	7374	827	29	2	21	2	HOXD3	2	177033861	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3077997	177033861	66165512	95	56278										
TTN	0	genome.wustl.edu	37	chr2	179407856	179407856	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggttctgacacacctttctCattttgtgcccttattctaa	5	11	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	179407856	179407856	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.89140	p.E29714Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	51	0	0	60	22	26.83	-	-	-	G	179407856	C	G	179407856	3	3	658	1	0	0	0	0	1	0	0	0	16832	835	29	2	11199	2	TTN	2	179407856	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2373995	179407856	63791517	96	56279										
TTN	0	genome.wustl.edu	37	chr2	179615969	179615969	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcagaagacgtatctaaaaGagataatttctttttctcca	5	7	4	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	179615969	179615969	G	A	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.11158	p.L3720F	0.001	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	31	0	0	41	21	33.87	-	-	-	A	179615969	G	A	179615969	3	1	658	1	0	0	0	0	1	0	0	0	16832	942	33	2	99139	2	TTN	2	179615969	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	208113	179615969	63583404	97	56280										
ZNF385B	0	genome.wustl.edu	37	chr2	180311286	180311286	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctagctgtgacagggagttCacagccactttgcatagtga	11	9	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	180311286	180311286	C	A	SNP	ZNF385B	ENST00000410066	human	ensembl	69_37n	-1	known	silent	c.882	p.V294	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331	50	0	0	62	43	40.95	-	-	-	A	180311286	C	A	180311286	2	1	658	1	0	0	0	0	0	0	0	1	17973	813	29	2		2	ZNF385B	2	180311286	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	695317	180311286	62888087	98	56281										
FAM171B	0	genome.wustl.edu	37	chr2	187626849	187626849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaaaatgccaattcattctCatgcacagcccccagatgcc	5	16	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	187626849	187626849	C	T	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.1780	p.H594Y	0.991	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	20	0	0	34	19	35.85	-	-	-	T	187626849	C	T	187626849	3	4	658	1	0	0	0	0	1	0	0	0	5531	826	29	2	1810	2	FAM171B	2	187626849	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7315563	187626849	55572524	99	56282										
RFTN2	0	genome.wustl.edu	37	chr2	198540114	198540114	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtttccacttgcggtctcttCagggtagaaaatatttttcc	8	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	198540114	198540114	C	T	SNP	RFTN2	ENST00000295049	human	ensembl	69_37n	-1	known	silent	c.69	p.L23	1.000	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	72	0	0	122	44	26.51	-	-	-	T	198540114	C	T	198540114	2	4	658	1	0	0	0	0	0	0	0	1	13342	813	29	2		2	RFTN2	2	198540114	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10913265	198540114	44659259	100	56283										
NOP58	0	genome.wustl.edu	37	chr2	203149118	203149118	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctgttgttaatgaacttatGagaggaattcgttcacaaat	8	6	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	203149118	203149118	G	A	SNP	NOP58	ENST00000264279	human	ensembl	69_37n	1	known	missense	c.348	p.M116I	1.000	NULL	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044	73	0	0	83	31	27.19	-	-	-	A	203149118	G	A	203149118	3	1	658	1	0	0	0	0	1	0	0	0	10612	1290	45	2	366	2	NOP58	2	203149118	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4609004	203149118	40050255	101	56284										
ZDBF2	0	genome.wustl.edu	37	chr2	207174095	207174095	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggactatattattctgggaGagccaagttgtcaatcttgt	10	6	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	207174095	207174095	G	C	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.4843	p.E1615Q	0.088	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	8	0	0	11	7	38.89	-	-	-	C	207174095	G	C	207174095	3	2	658	1	0	0	0	0	1	0	0	0	17695	943	33	2	4853	2	ZDBF2	2	207174095	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4024977	207174095	36025278	102	56285										
ZDBF2	0	genome.wustl.edu	37	chr2	207174272	207174272	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttaatttggaagacacttctCatcgaacgactcaccgactg	7	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	207174272	207174272	C	G	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.5020	p.H1674D	0.130	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	24	0	0	41	21	33.87	-	-	-	G	207174272	C	G	207174272	3	3	658	1	0	0	0	0	1	0	0	0	17695	826	29	2	5030	2	ZDBF2	2	207174272	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	177	207174272	36025101	103	56286										
CPS1	0	genome.wustl.edu	37	chr2	211455582	211455582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagtacaggaaacttaataaCaggattggctgctggtgcca	11	8	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	211455582	211455582	C	T	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.917	p.T306I	1.000	pfam_GATASE_1,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	34	0	0	40	20	33.33	-	-	-	T	211455582	C	T	211455582	3	4	658	1	0	0	0	0	1	0	0	0	3853	478	17	4	955	4	CPS1	2	211455582	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4281310	211455582	31743791	104	56287										
ARPC2	0	genome.wustl.edu	37	chr2	219110143	219110143	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttttgctttgtcttggcagGagttcaaagaaggacgcaga	12	7	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	219110143	219110143	G	T	SNP	ARPC2	ENST00000295685	human	ensembl	69_37n	1	known	nonsense	c.550	p.E184*	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466	31	0	0	36	6	14.29	-	-	-	T	219110143	G	T	219110143	4	4	658	1	0	0	0	0	0	1	0	0	975	1188	41	2	576	2	ARPC2	2	219110143	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7654561	219110143	24089230	105	56288										
ABCB6	0	genome.wustl.edu	37	chr2	220075710	220075710	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcagcctgagcagcagcctCcacctcatcattcccagctg	8	17	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	220075710	220075710	C	T	SNP	ABCB6	ENST00000443805	human	ensembl	69_37n	-1	known	nonsense	c.51	p.W17*	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	ABCB6	HGNC	ENSG00000115657	35	0	0	32	20	38.46	-	-	-	T	220075710	C	T	220075710	4	4	658	1	0	0	0	0	0	1	0	0	45	864	30	2	459	2	ABCB6	2	220075710	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	965567	220075710	23123663	106	56289										
ACSL3	0	genome.wustl.edu	37	chr2	223782858	223782861	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attactagtaaagaactcttAcaaacaaagttgaaggtgag							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	223782858	223782861	ACAA	-	DEL	ACSL3	ENST00000357430	human	ensembl	69_37n	1	known	frame_shift_del	c.651_654	p.T219fs	0.998:1.000:1.000:0.989	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983	52	0	0	75	17	18.09	-	-	-	-	223782861	ACAA	-	223782858	7	5	658	1	0	1	0	1	0	0	0	0	178	388	14	0	661	0	ACSL3	2	223782858	Frame_Shift_Del	DEL	ACAA	TCGA-C8-A26Y-01A-11D-A16D-09	3707148	223782858	19416515	107	56290										
DOCK10	0	genome.wustl.edu	37	chr2	225738737	225738737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttatcggatcattttcattCtccgtaacacatccctgaag	6	11	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	225738737	225738737	C	G	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1233	p.E411D	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	80	0	0	107	51	32.08	-	-	-	G	225738737	C	G	225738737	3	3	658	1	0	0	0	0	1	0	0	0	4720	912	32	2	5511	2	DOCK10	2	225738737	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1955879	225738737	17460636	108	56291										
AGAP1	0	genome.wustl.edu	37	chr2	236839505	236839505	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	catgcaccagcgctcctactCagtctccagtgccgaccagt	8	17	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	236839505	236839505	C	T	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	missense	c.1421	p.S474L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	25	0	0	17	13	43.33	-	-	-	T	236839505	C	T	236839505	3	4	658	1	0	0	0	0	1	0	0	0	366	838	29	2	1467	2	AGAP1	2	236839505	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	11100768	236839505	6359868	109	56292										
HDLBP	0	genome.wustl.edu	37	chr2	242179340	242179340	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttggatcaaggcctccagCtccttctgtgcctctcggac	9	14	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	242179340	242179340	C	G	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.2367	p.E789D	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	63	0	0	84	21	20	-	-	-	G	242179340	C	G	242179340	3	3	658	1	0	0	0	0	1	0	0	0	7076	796	28	4	1483	4	HDLBP	2	242179340	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5339835	242179340	1020033	110	56293										
FARP2	0	genome.wustl.edu	37	chr2	242352742	242352742	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cggaaataggagattacgatGaaacgctggaccgagagcac	13	8	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	2	242352742	242352742	G	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	0.996	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	36	0	0	37	19	33.93	-	-	-	A	242352742	G	A	242352742	3	1	658	1	0	0	0	0	1	0	0	0	5723	1291	45	2	551	2	FARP2	2	242352742	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	173402	242352742	846631	111	56294										
CNTN6	0	genome.wustl.edu	37	chr3	1445027	1445027	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agttccagaggaattcaattCttagaacctagcacccattt	6	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	1445027	1445027	C	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.3012	p.F1004L	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	67	0	0	56	60	51.72	-	-	-	A	1445027	C	A	1445027	3	1	658	1	0	0	0	0	1	0	0	0	3675	912	32	2	3098	2	CNTN6	3	1445027	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		1445027	196577403	112	56295										
FGD5	0	genome.wustl.edu	37	chr3	14939068	14939068	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgacatggaccatgaaggcaGagacacattggcccgggagg	15	9	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	14939068	14939068	G	A	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.2801	p.R934K	0.007	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	53	0	0	35	42	53.85	-	-	-	A	14939068	G	A	14939068	3	1	658	1	0	0	0	0	1	0	0	0	5882	942	33	2	2819	2	FGD5	3	14939068	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	13494041	14939068	183083362	113	56296										
ANKRD28	0	genome.wustl.edu	37	chr3	15711902	15711902	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctcatgatgggcaaagcttCaaagctgactgtttttgagg	11	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	15711902	15711902	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.3136	p.E1046K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	47	0	0	49	42	46.15	-	-	-	T	15711902	C	T	15711902	3	4	658	1	0	0	0	0	1	0	0	0	656	835	29	2	128	2	ANKRD28	3	15711902	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	772834	15711902	182310528	114	56297										
TOP2B	0	genome.wustl.edu	37	chr3	25656736	25656736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgctaaatcctctttccaaAgatctgaaggagattttctt	6	10	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	25656736	25656736	A	C	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	missense	c.3551	p.L1184R	1.000	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_cen,smart_Topo_IIA_A/C	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	23	0	0	28	15	34.88	-	-	-	C	25656736	A	C	25656736	3	2	658	1	0	0	0	0	1	0	0	0	16462	72	3	5	1369	5	TOP2B	3	25656736	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	9944834	25656736	172365694	115	56298										
CNOT10	0	genome.wustl.edu	37	chr3	32767040	32767040	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctactttaaaaaggctctgCaagagaatgacaatgtctgt	8	7	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	32767040	32767040	C	G	SNP	CNOT10	ENST00000454516	human	ensembl	69_37n	1	known	missense	c.1141	p.Q381E	1.000	pfam_TPR-1,smart_TPR_repeat	pfam_TPR-1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	45	0	0	21	34	60.71	-	-	-	G	32767040	C	G	32767040	3	3	658	1	0	0	0	0	1	0	0	0	3648	711	25	4	995	4	CNOT10	3	32767040	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7110304	32767040	165255390	116	56299										
ARPP21	0	genome.wustl.edu	37	chr3	35723355	35723355	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagaaagtctggatgaagagGagaaactggaactgcaggtg	15	5	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	35723355	35723355	G	T	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	nonsense	c.112	p.E38*	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	23	0	0	24	21	44.68	-	-	-	T	35723355	G	T	35723355	4	4	658	1	0	0	0	0	0	1	0	0	982	1175	41	2	114	2	ARPP21	3	35723355	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2956315	35723355	162299075	117	56300										
NBEAL2	0	genome.wustl.edu	37	chr3	47038822	47038822	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtagctgcacagcccaaagAggctgaagcaggtccagctg	13	11	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	47038822	47038822	A	G	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.2723	p.E908G	0.612	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	22	0	0	21	14	40	-	-	-	G	47038822	A	G	47038822	3	3	658	1	0	0	0	0	1	0	0	0	10261	304	11	5	2797	5	NBEAL2	3	47038822	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	11315467	47038822	150983608	118	56301										
WDR6	0	genome.wustl.edu	37	chr3	49052659	49052659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	actgctggcctgtgagccctGagtttggccaccgttgtgcc	13	13	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	49052659	49052659	G	C	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.3394	p.E1132Q	0.836	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	18	0	0	12	24	66.67	-	-	-	C	49052659	G	C	49052659	3	2	658	1	0	0	0	0	1	0	0	0	17407	1291	45	2	3416	2	WDR6	3	49052659	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2013837	49052659	148969771	119	56302										
BSN	0	genome.wustl.edu	37	chr3	49701937	49701937	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgatggggagagcgtgttctCcaagatcctccctggcgggg	16	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	49701937	49701937	C	G	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.11690	p.S3897C	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	30	0	0	11	31	73.81	-	-	-	G	49701937	C	G	49701937	3	3	658	1	0	0	0	0	1	0	0	0	1538	855	30	2	11724	2	BSN	3	49701937	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	649278	49701937	148320493	120	56303										
IP6K1	0	genome.wustl.edu	37	chr3	49770247	49770247	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agagctttcggtccttggacTcggagcgcatgcggctcagc	14	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	49770247	49770247	T	C	SNP	IP6K1	ENST00000321599	human	ensembl	69_37n	-1	known	missense	c.593	p.E198G	1.000	NULL	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095	17	0	0	31	16	34.04	-	-	-	C	49770247	T	C	49770247	3	2	658	1	0	0	0	0	1	0	0	0	7842	1551	54	5	744	5	IP6K1	3	49770247	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	68310	49770247	148252183	121	56304										
IL17RD	0	genome.wustl.edu	37	chr3	57131939	57131939	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctttaggcagaagtcactctCaggccctggtttgcacatga	10	11	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	57131939	57131939	C	G	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	missense	c.1792	p.E598Q	0.676	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	17	0	0	12	25	67.57	-	-	-	G	57131939	C	G	57131939	3	3	658	1	0	0	0	0	1	0	0	0	7696	835	29	2	435	2	IL17RD	3	57131939	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7361692	57131939	140890491	122	56305										
IL17RD	0	genome.wustl.edu	37	chr3	57135219	57135219	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttccgcacctcacagccacaGaagtcctggaggaagtaggc	11	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	57135219	57135219	G	C	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	missense	c.1152	p.F384L	1.000	pfam_SEFIR,superfamily_TIR_dom	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	30	0	0	15	17	53.12	-	-	-	C	57135219	G	C	57135219	3	2	658	1	0	0	0	0	1	0	0	0	7696	933	33	2	1079	2	IL17RD	3	57135219	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3280	57135219	140887211	123	56306										
OR5H1	0	genome.wustl.edu	37	chr3	97851707	97851707	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctggaaagaccctcaccttCatatcccaatgtacttactc	4	14	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	97851707	97851707	C	A	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	missense	c.166	p.H56N	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	93	0	0	52	50	49.02	-	-	-	A	97851707	C	A	97851707	3	1	658	1	0	0	0	0	1	0	0	0	11232	826	29	2	168	2	OR5H1	3	97851707	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	40716488	97851707	100170723	124	56307										
IMPG2	0	genome.wustl.edu	37	chr3	100948257	100948257	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcactgctctcatacatctgTctgatttcttctctgctcag	5	13	7	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	100948257	100948257	T	A	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.3600	p.R1200S	0.996	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	55	0	0	40	30	42.86	-	-	-	A	100948257	T	A	100948257	3	1	658	1	0	0	0	0	1	0	0	0	7783	1664	58	5	137	5	IMPG2	3	100948257	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	3096550	100948257	97074173	125	56308										
CEP97	0	genome.wustl.edu	37	chr3	101484237	101484237	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tacagttagatacattgtctGacggtgcttctgtagatgag	11	6	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	101484237	101484237	G	A	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	1	known	missense	c.2518	p.D840N	0.927	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	33	0	0	15	26	63.41	-	-	-	A	101484237	G	A	101484237	3	1	658	1	0	0	0	0	1	0	0	0	3292	1290	45	2	2482	2	CEP97	3	101484237	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	535980	101484237	96538193	126	56309										
CD47	0	genome.wustl.edu	37	chr3	107776388	107776388	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagatactcaaacctgaaatCagaagagggccatgcattgg	10	8	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	107776388	107776388	C	T	SNP	CD47	ENST00000361309	human	ensembl	69_37n	-1	known	silent	c.813	p.L271	1.000	pfam_CD47_TM	pfam_CD47_Vset,pfam_CD47_TM,pfscan_Ig-like	-	no_errors	CD47	HGNC	ENSG00000196776	36	0	0	36	42	53.85	-	-	-	T	107776388	C	T	107776388	2	4	658	1	0	0	0	0	0	0	0	1	3048	813	29	2		2	CD47	3	107776388	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6292151	107776388	90246042	127	56310										
MYH15	0	genome.wustl.edu	37	chr3	108163603	108163603	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttctgtaattgtgcacactCttccttcagtccagctactt	5	12	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	108163603	108163603	C	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.2599	p.E867K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	60	0	0	30	40	57.14	-	-	-	T	108163603	C	T	108163603	3	4	658	1	0	0	0	0	1	0	0	0	10106	922	32	2	3321	2	MYH15	3	108163603	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	387215	108163603	89858827	128	56311										
CD200R1L	0	genome.wustl.edu	37	chr3	112546483	112546483	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcttaatgcgataggagggCaacaaagcacagcatttata	9	7	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	112546483	112546483	C	A	SNP	CD200R1L	ENST00000398214	human	ensembl	69_37n	-1	known	missense	c.161	p.C54F	0.019	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1L	HGNC	ENSG00000206531	72	0	0	44	47	51.65	-	-	-	A	112546483	C	A	112546483	3	1	658	1	0	0	0	0	1	0	0	0	3011	710	25	4	670	4	CD200R1L	3	112546483	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4382880	112546483	85475947	129	56312										
WDR52	0	genome.wustl.edu	37	chr3	113082085	113082085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctttgatttgctctctcttCcgtgcctttatttctcccac	5	14	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	113082085	113082085	C	T	SNP	WDR52	ENST00000490481	human	ensembl	69_37n	-1	known	missense	c.73	p.E25K	0.019	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WDR52	HGNC	ENSG00000206530	72	0	0	50	66	55.93	-	-	-	T	113082085	C	T	113082085	3	4	658	1	0	0	0	0	1	0	0	0	17401	842	30	2	2798	2	WDR52	3	113082085	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	535602	113082085	84940345	130	56313										
GOLGB1	0	genome.wustl.edu	37	chr3	121413701	121413701	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttacttcctcctgaagcattTttagttcaccatcctttgtt	4	11	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	121413701	121413701	T	G	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.5654	p.K1885T	0.052	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	48	0	0	39	26	40	-	-	-	G	121413701	T	G	121413701	3	3	658	1	0	0	0	0	1	0	0	0	6614	1841	64	5	4165	5	GOLGB1	3	121413701	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	8331616	121413701	76608729	131	56314										
CD86	0	genome.wustl.edu	37	chr3	121822403	121822403	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttatttcaatgagactgcaGacctgccatgccaatttgca	7	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	121822403	121822403	G	A	SNP	CD86	ENST00000330540	human	ensembl	69_37n	1	known	missense	c.109	p.D37N	0.019	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD86	HGNC	ENSG00000114013	27	0	0	26	21	44.68	-	-	-	A	121822403	G	A	121822403	3	1	658	1	0	0	0	0	1	0	0	0	3072	942	33	2	119	2	CD86	3	121822403	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	408702	121822403	76200027	132	56315										
KALRN	0	genome.wustl.edu	37	chr3	123946843	123946843	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgttgtcccacagggtcttTtcggaatgatggtttgaaag	12	6	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	123946843	123946843	T	A	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.74	p.F25Y	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	130	0	0	108	67	38.29	-	-	-	A	123946843	T	A	123946843	3	1	658	1	0	0	0	0	1	0	0	0	8029	1841	64	5	80	5	KALRN	3	123946843	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	2124440	123946843	74075587	133	56316										
KALRN	0	genome.wustl.edu	37	chr3	124132497	124132497	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atctgcaccagtacatcacgGaggtccaggcatcaggtggg	13	11	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	124132497	124132497	G	T	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	nonsense	c.2521	p.E841*	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	35	0	0	18	30	62.5	-	-	-	T	124132497	G	T	124132497	4	4	658	1	0	0	0	0	0	1	0	0	8029	1175	41	2	2575	2	KALRN	3	124132497	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	185654	124132497	73889933	134	56317										
PLXNA1	0	genome.wustl.edu	37	chr3	126724938	126724938	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaggagaccagcgggtggtGaaactctacctaaagtccaa	12	10	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	126724938	126724938	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	silent	c.1914	p.V638	0.997	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	48	0	0	21	58	73.42	-	-	-	A	126724938	G	A	126724938	2	1	658	1	0	0	0	0	0	0	0	1	12193	1277	45	2		2	PLXNA1	3	126724938	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2592441	126724938	71297492	135	56318										
COL6A6	0	genome.wustl.edu	37	chr3	130289703	130289703	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagacgttgtgtttgtcattGatagctctggcagtattgac	11	6	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	130289703	130289703	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.2443	p.D815N	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	37	0	0	17	24	58.54	-	-	-	A	130289703	G	A	130289703	3	1	658	1	0	0	0	0	1	0	0	0	3733	1290	45	2	2465	2	COL6A6	3	130289703	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3564765	130289703	67732727	136	56319										
TRPC1	0	genome.wustl.edu	37	chr3	142499689	142499689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttataggaatgattatgagGaactagcccggcaatgtaaa	10	5	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	142499689	142499689	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	1.000	tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	41	0	0	30	51	62.96	-	-	-	A	142499689	G	A	142499689	3	1	658	1	0	0	0	0	1	0	0	0	16674	1175	41	2	694	2	TRPC1	3	142499689	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	12209986	142499689	55522741	137	56320										
GOLIM4	0	genome.wustl.edu	37	chr3	167728605	167728605	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttctcttcagtcaaatcttCctgaacctaaaacaaaccac	2	13	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	167728605	167728605	C	G	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.1867	p.E623Q	1.000	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	48	0	0	78	50	39.06	-	-	-	G	167728605	C	G	167728605	3	3	658	1	0	0	0	0	1	0	0	0	6615	864	30	2	231	2	GOLIM4	3	167728605	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	25228916	167728605	30293825	138	56321										
GOLIM4	0	genome.wustl.edu	37	chr3	167759237	167759237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctttccttagttgtctattCtcttctctcaaattgtatac	4	10	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	167759237	167759237	C	G	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.543	p.E181D	1.000	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	108	0	0	208	63	23.25	-	-	-	G	167759237	C	G	167759237	3	3	658	1	0	0	0	0	1	0	0	0	6615	912	32	2	1591	2	GOLIM4	3	167759237	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	30632	167759237	30263193	139	56322										
PLD1	0	genome.wustl.edu	37	chr3	171405270	171405270	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttggctttcctattcctttCagttttgaatccacatcatc	4	12	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	171405270	171405270	C	A	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	silent	c.1644	p.L548	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	73	0	0	135	57	29.53	-	-	-	A	171405270	C	A	171405270	2	1	658	1	0	0	0	0	0	0	0	1	12119	813	29	2		2	PLD1	3	171405270	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3646033	171405270	26617160	140	56323										
ATP11B	0	genome.wustl.edu	37	chr3	182605459	182605459	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atatagtcttttggaacagcAtgtagaccctcatgtgttac	8	8	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	182605459	182605459	A	T	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	missense	c.2801	p.H934L	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	48	0	0	101	17	14.29	-	-	-	T	182605459	A	T	182605459	3	4	658	1	0	0	0	0	1	0	0	0	1124	217	8	5	2895	5	ATP11B	3	182605459	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	11200189	182605459	15416971	141	56324										
B3GNT5	0	genome.wustl.edu	37	chr3	182988034	182988034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaagaaaactggcttgggaaGatcaaaggtacaatgatata	10	4	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	182988034	182988034	G	C	SNP	B3GNT5	ENST00000326505	human	ensembl	69_37n	1	known	missense	c.448	p.D150H	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597	21	0	0	39	16	28.57	-	-	-	C	182988034	G	C	182988034	3	2	658	1	0	0	0	0	1	0	0	0	1264	942	33	2	450	2	B3GNT5	3	182988034	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	382575	182988034	15034396	142	56325										
B3GNT5	0	genome.wustl.edu	37	chr3	182988373	182988373	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcctatgtaatctccggtGatgtagctgccaaagtctat	9	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	182988373	182988373	G	A	SNP	B3GNT5	ENST00000326505	human	ensembl	69_37n	1	known	missense	c.787	p.D263N	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597	42	0	0	43	10	18.52	-	-	-	A	182988373	G	A	182988373	3	1	658	1	0	0	0	0	1	0	0	0	1264	1290	45	2	789	2	B3GNT5	3	182988373	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	339	182988373	15034057	143	56326										
TRA2B	0	genome.wustl.edu	37	chr3	185643399	185643399	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtataatgccttcgggagctTcttctggatctagacctgca	10	10	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	185643399	185643399	T	G	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	missense	c.186	p.R62S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	43	0	0	70	28	28.57	-	-	-	G	185643399	T	G	185643399	3	3	658	1	0	0	0	0	1	0	0	0	16530	1780	62	5	708	5	TRA2B	3	185643399	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	2655026	185643399	12379031	144	56327										
EIF4A2	0	genome.wustl.edu	37	chr3	186506999	186506999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agaggattcttcgtgacattGagactttctacaatactaca	7	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	186506999	186506999	G	A	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.1168	p.E390K	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	44	0	0	73	32	30.19	-	-	-	A	186506999	G	A	186506999	3	1	658	1	0	0	0	0	1	0	0	0	5062	1291	45	2	1207	2	EIF4A2	3	186506999	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	863600	186506999	11515431	145	56328										
TP63	0	genome.wustl.edu	37	chr3	189604231	189604231	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggtaacagctccccacctctGaacaaaatgaacagcatgaa	7	12	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	189604231	189604231	G	A	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	silent	c.1398	p.L466	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	52	0	0	53	27	33.33	-	-	-	A	189604231	G	A	189604231	2	1	658	1	0	0	0	0	0	0	0	1	16488	1277	45	2		2	TP63	3	189604231	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3097232	189604231	8418199	146	56329										
TMEM207	0	genome.wustl.edu	37	chr3	190167527	190167527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaaagagagatagttacctgGaatagcggcaaacacaagat	11	6	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	190167527	190167527	G	T	SNP	TMEM207	ENST00000354905	human	ensembl	69_37n	-1	known	missense	c.72	p.F24L	1.000	NULL	NULL	-	no_errors	TMEM207	HGNC	ENSG00000198398	33	0	0	49	17	25.37	-	-	-	T	190167527	G	T	190167527	3	4	658	1	0	0	0	0	1	0	0	0	16227	1165	41	2	388	2	TMEM207	3	190167527	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	563296	190167527	7854903	147	56330										
CCDC50	0	genome.wustl.edu	37	chr3	191093368	191093368	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtgaggagcagctccacctCcatgacgcaggtaatagagg	13	10	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	191093368	191093368	C	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	silent	c.966	p.L322	0.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	22	0	0	24	20	44.44	-	-	-	T	191093368	C	T	191093368	2	4	658	1	0	0	0	0	0	0	0	1	2847	842	30	2		2	CCDC50	3	191093368	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	925841	191093368	6929062	148	56331										
OPA1	0	genome.wustl.edu	37	chr3	193374947	193374947	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagagcatgatgacatatttGataaacttaaagaggctgtt	9	4	0	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	193374947	193374947	G	C	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	missense	c.2257	p.D753H	1.000	NULL	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	43	0	0	64	28	30.43	-	-	-	C	193374947	G	C	193374947	3	2	658	1	0	0	0	0	1	0	0	0	10944	1290	45	2	2347	2	OPA1	3	193374947	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2281579	193374947	4647483	149	56332										
ATP13A3	0	genome.wustl.edu	37	chr3	194154626	194154626	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgttgttctcaattgcatctCtgcagaaaaagaagttttaa	7	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	194154626	194154626	C	G	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	splice_site	c.2121-1	e19-1	1.000	-	-	-	no_errors	ATP13A3	HGNC	ENSG00000133657	47	0	0	68	60	46.51	-	-	-	G	194154626	C	G	194154626	5	3	658	1	0	0	0	0	0	0	1	0	1129	927	32	2	1612	2	ATP13A3	3	194154626	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	779679	194154626	3867804	150	56333										
DLG1	0	genome.wustl.edu	37	chr3	196792627	196792627	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaattctgagatcaagtcatCatttatcctgtctttcatag	5	8	6	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	3	196792627	196792627	C	A	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.2251	p.D751Y	1.000	pfam_Guanylate_kin,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	59	0	0	135	26	16.05	-	-	-	A	196792627	C	A	196792627	3	1	658	1	0	0	0	0	1	0	0	0	4590	826	29	2	549	2	DLG1	3	196792627	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2638001	196792627	1229803	151	56334										
ZNF595	0	genome.wustl.edu	37	chr4	86571	86571	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ataagagaattcatactggaGagaaaccctacacatgtgaa	8	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	86571	86571	G	C	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	28	0	0	30	22	42.31	-	-	-	C	86571	G	C	86571	1	2	658	0	1	0	0	0	0	0	0	0	18121	933	33	2		2	ZNF595	4	86571	RNA	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		86571	191067705	152	56335										
ZNF518B	0	genome.wustl.edu	37	chr4	10447058	10447058	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taggttgacttcatttggctCagacagggtcattttatttg	10	6	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	10447058	10447058	C	T	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.895	p.E299K	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	49	0	0	73	40	35.4	-	-	-	T	10447058	C	T	10447058	3	4	658	1	0	0	0	0	1	0	0	0	18059	835	29	2	2333	2	ZNF518B	4	10447058	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10360487	10447058	180707218	153	56336										
RFC1	0	genome.wustl.edu	37	chr4	39322978	39322979	+	Frame_Shift_Del	DEL	TC	TC	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgaaaacgtttctcccgctTctgtgtcctttcgagcctaa							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	39322978	39322979	TC	-	DEL	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	frame_shift_del	c.737_736	p.E246fs	1.000:0.998	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	98	0	0	109	26	19.12	-	-	-	-	39322979	TC	-	39322978	7	5	658	1	0	1	0	1	0	0	0	0	13327	1783	62	0	2778	0	RFC1	4	39322978	Frame_Shift_Del	DEL	TC	TCGA-C8-A26Y-01A-11D-A16D-09	28875920	39322978	151831298	154	56337										
GABRA2	0	genome.wustl.edu	37	chr4	46264068	46264068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcaataaaccagtccatggCagttgcataagccactttgg	9	10	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	46264068	46264068	C	T	SNP	GABRA2	ENST00000540012	human	ensembl	69_37n	-1	known	missense	c.769	p.A257T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834	48	0	0	68	11	13.92	-	-	-	T	46264068	C	T	46264068	3	4	658	1	0	0	0	0	1	0	0	0	6210	710	25	4	429	4	GABRA2	4	46264068	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6941090	46264068	144890208	155	56338										
TEC	0	genome.wustl.edu	37	chr4	48147487	48147487	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaccttcccgaatagctttGattgcgactttgtactgggc	10	11	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	48147487	48147487	G	C	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	missense	c.1191	p.I397M	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	TEC	HGNC	ENSG00000135605	62	0	0	56	8	12.5	-	-	-	C	48147487	G	C	48147487	3	2	658	1	0	0	0	0	1	0	0	0	15837	1280	45	2	728	2	TEC	4	48147487	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1883419	48147487	143006789	156	56339										
FRYL	0	genome.wustl.edu	37	chr4	48636338	48636338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccattacaacttcaattttCttttcagcttgaacagcaaa	4	10	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	48636338	48636338	C	G	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	missense	c.90	p.K30N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	84	0	0	78	46	37.1	-	-	-	G	48636338	C	G	48636338	3	3	658	1	0	0	0	0	1	0	0	0	6113	912	32	2	9195	2	FRYL	4	48636338	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	488851	48636338	142517938	157	56340										
UBA6	0	genome.wustl.edu	37	chr4	68511732	68511732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttaaggcatcatatctatctCctctgaaaaaaataacatat	3	8	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	68511732	68511732	C	T	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.1319	p.G440E	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	30	0	0	34	17	33.33	-	-	-	T	68511732	C	T	68511732	3	4	658	1	0	0	0	0	1	0	0	0	16929	855	30	2	1911	2	UBA6	4	68511732	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	19875394	68511732	122642544	158	56341										
SLC4A4	0	genome.wustl.edu	37	chr4	72205157	72205157	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcccagctccccctcagctCttcacggaactggatgagct	9	16	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	72205157	72205157	C	T	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	silent	c.324	p.L108	1.000	superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	24	0	0	38	19	33.33	-	-	-	T	72205157	C	T	72205157	2	4	658	1	0	0	0	0	0	0	0	1	14745	900	32	2		2	SLC4A4	4	72205157	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3693425	72205157	118949119	159	56342										
AFM	0	genome.wustl.edu	37	chr4	74365813	74365813	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtaaaacaaactttgccttCagaaggccctgctttgagag	9	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	74365813	74365813	C	A	SNP	AFM	ENST00000226355	human	ensembl	69_37n	1	known	missense	c.1515	p.F505L	0.926	pirsf_Serum_albumin_subgr,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin_subgr,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_Serum_albumin,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557	61	0	0	90	38	29.69	-	-	-	A	74365813	C	A	74365813	3	1	658	1	0	0	0	0	1	0	0	0	361	825	29	2	1561	2	AFM	4	74365813	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2160656	74365813	116788463	160	56343										
HELQ	0	genome.wustl.edu	37	chr4	84368172	84368172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaccgagttctataccaaaaCttgacaaacctgaaatctag	5	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	84368172	84368172	C	G	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.1208	p.S403T	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	27	0	0	20	22	52.38	-	-	-	G	84368172	C	G	84368172	3	3	658	1	0	0	0	0	1	0	0	0	7098	565	20	4	2157	4	HELQ	4	84368172	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10002359	84368172	106786104	161	56344										
PKD2	0	genome.wustl.edu	37	chr4	88973231	88973231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggaagatcaaaatactttccCcaactttgagcatctggcat	7	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	88973231	88973231	C	T	SNP	PKD2	ENST00000237596	human	ensembl	69_37n	1	known	missense	c.1637	p.P546L	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_HAND_2,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	64	0	0	61	12	16.44	-	-	-	T	88973231	C	T	88973231	3	4	658	1	0	0	0	0	1	0	0	0	12040	623	22	4	1663	4	PKD2	4	88973231	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4605059	88973231	102181045	162	56345										
HERC6	0	genome.wustl.edu	37	chr4	89329723	89329723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtggacttagaaatggcaaGagataccttcaagaagttaa	10	5	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	89329723	89329723	G	A	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.1322	p.R441K	0.999	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	74	0	0	43	18	29.03	-	-	-	A	89329723	G	A	89329723	3	1	658	1	0	0	0	0	1	0	0	0	7113	942	33	2	1161	2	HERC6	4	89329723	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	356492	89329723	101824553	163	56346										
MMRN1	0	genome.wustl.edu	37	chr4	90857263	90857263	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacccttgcaggtattcccaGagatgagaaactaaatcagt	9	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	90857263	90857263	G	C	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.2432	p.R811T	0.485	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	14	0	0	15	10	40	-	-	-	C	90857263	G	C	90857263	3	2	658	1	0	0	0	0	1	0	0	0	9742	942	33	2	2454	2	MMRN1	4	90857263	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1527540	90857263	100297013	164	56347										
SMARCAD1	0	genome.wustl.edu	37	chr4	95173942	95173942	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttaatccaaagagagttgtTgaagactctgaatatgattc	8	5	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	95173942	95173942	T	G	SNP	SMARCAD1	ENST00000359052	human	ensembl	69_37n	1	known	silent	c.1065	p.V355	0.001	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104	36	0	0	35	20	36.36	-	-	-	G	95173942	T	G	95173942	2	3	658	1	0	0	0	0	0	0	0	1	14861	1799	63	5		5	SMARCAD1	4	95173942	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	4316679	95173942	95980334	165	56348										
MANBA	0	genome.wustl.edu	37	chr4	103592459	103592459	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attattcctagttcatcacaGagttcatagaattcatcctg	5	9	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	103592459	103592459	G	C	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	silent	c.1209	p.L403	0.990	pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	46	0	0	33	30	46.88	-	-	-	C	103592459	G	C	103592459	2	2	658	1	0	0	0	0	0	0	0	1	9290	929	33	2		2	MANBA	4	103592459	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8418517	103592459	87561817	166	56349										
CENPE	0	genome.wustl.edu	37	chr4	104061023	104061023	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcttttatcctccttagctCatctctttctttagctacaa	2	12	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	104061023	104061023	C	A	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	nonsense	c.6127	p.E2043*	0.487	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	60	0	0	68	54	44.26	-	-	-	A	104061023	C	A	104061023	4	1	658	1	0	0	0	0	0	1	0	0	3259	835	29	2	2026	2	CENPE	4	104061023	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	468564	104061023	87093253	167	56350										
ENPEP	0	genome.wustl.edu	37	chr4	111441503	111441503	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acccaagagctaacccttctCagcccccttcagatcttggg	7	16	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	111441503	111441503	C	A	SNP	ENPEP	ENST00000509344	human	ensembl	69_37n	1	known	nonsense	c.326	p.S109*	0.528	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ENPEP	HGNC	ENSG00000138792	32	0	0	37	20	35.09	-	-	-	A	111441503	C	A	111441503	4	1	658	1	0	0	0	0	0	1	0	0	5165	827	29	2	1746	2	ENPEP	4	111441503	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7380480	111441503	79712773	168	56351										
ENPEP	0	genome.wustl.edu	37	chr4	111470981	111470981	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	accagaaaacttcattagctCaagaaaaagaaaaactgctg	6	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	111470981	111470981	C	G	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.2440	p.Q814E	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	54	0	0	38	35	47.95	-	-	-	G	111470981	C	G	111470981	3	3	658	1	0	0	0	0	1	0	0	0	5165	827	29	2	2506	2	ENPEP	4	111470981	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	29478	111470981	79683295	169	56352										
C4orf21	0	genome.wustl.edu	37	chr4	113461086	113461086	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caggctaaatttcccacaatCaacaaatgcctctttcctct	3	14	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	113461086	113461086	C	T	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	silent	c.6105	p.L2035	1.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	51	0	0	29	20	40.82	-	-	-	T	113461086	C	T	113461086	2	4	658	1	0	0	0	0	0	0	0	1	2275	825	29	2		2	C4orf21	4	113461086	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1990105	113461086	77693190	170	56353										
ANK2	0	genome.wustl.edu	37	chr4	114277934	114277934	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtttccaaacaatatactttCaagatgaatgaagatactca	5	7	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	114277934	114277934	C	G	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.8160	p.F2720L	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	32	0	0	13	16	53.33	-	-	-	G	114277934	C	G	114277934	3	3	658	1	0	0	0	0	1	0	0	0	621	825	29	2	8375	2	ANK2	4	114277934	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	816848	114277934	76876342	171	56354										
TMEM192	0	genome.wustl.edu	37	chr4	166024129	166024129	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaccacagaagattcactatGatgactgtaggaagaggatg	11	6	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	166024129	166024129	G	C	SNP	TMEM192	ENST00000306480	human	ensembl	69_37n	-1	known	missense	c.147	p.I49M	0.997	NULL	NULL	-	no_errors	TMEM192	HGNC	ENSG00000170088	76	0	0	47	51	52.04	-	-	-	C	166024129	G	C	166024129	3	2	658	1	0	0	0	0	1	0	0	0	16210	1280	45	2	688	2	TMEM192	4	166024129	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	51746195	166024129	25130147	172	56355										
ING2	0	genome.wustl.edu	37	chr4	184431864	184431864	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagcaggaaagggaagcttCacctgttgagtttgcaatag	12	7	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	184431864	184431864	C	T	SNP	ING2	ENST00000302327	human	ensembl	69_37n	1	known	missense	c.602	p.S201L	0.999	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING2	HGNC	ENSG00000168556	47	0	0	38	14	26.92	-	-	-	T	184431864	C	T	184431864	3	4	658	1	0	0	0	0	1	0	0	0	7790	838	29	2	608	2	ING2	4	184431864	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	18407735	184431864	6722412	173	56356										
KIAA1430	0	genome.wustl.edu	37	chr4	186112073	186112074	+	Frame_Shift_Del	DEL	GA	GA	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcttgaagaggctggcaatGagaaagaacttacagtttgt							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	186112073	186112074	GA	-	DEL	KIAA1430	ENST00000296775	human	ensembl	69_37n	-1	known	frame_shift_del	c.278_277	p.S93fs	0.001:0.000	NULL	NULL	-	no_errors	KIAA1430	HGNC	ENSG00000164323	84	0	0	99	20	16.67	-	-	-	-	186112074	GA	-	186112073	7	5	658	1	0	1	0	1	0	0	0	0	8284	1294	45	0	1336	0	KIAA1430	4	186112073	Frame_Shift_Del	DEL	GA	TCGA-C8-A26Y-01A-11D-A16D-09	1680209	186112073	5042203	174	56357										
FAT1	0	genome.wustl.edu	37	chr4	187540106	187540106	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaaagtaaatatctgtcctCtctcatttatgtaaaatctg	4	9	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	4	187540106	187540106	C	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.7634	p.R2545K	0.971	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	44	0	0	27	16	37.21	-	-	-	T	187540106	C	T	187540106	3	4	658	1	0	0	0	0	1	0	0	0	5735	913	32	2	6204	2	FAT1	4	187540106	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1428033	187540106	3614170	175	56358										
TERT	0	genome.wustl.edu	37	chr5	1293843	1293843	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aacaggggccgcatttgccaGtagcgctggggcaggcgggg	19	10	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	1293843	1293843	G	T	SNP	TERT	ENST00000310581	human	ensembl	69_37n	-1	known	nonsense	c.1158	p.Y386*	0.994	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,prints_Telomerase_RT,pfscan_RVT	-	no_errors	TERT	HGNC	ENSG00000164362	9	0	0	12	7	36.84	-	-	-	T	1293843	G	T	1293843	4	4	658	1	0	0	0	0	0	1	0	0	15859	1024	36	4	2300	4	TERT	5	1293843	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		1293843	179621417	176	56359										
FAM173B	0	genome.wustl.edu	37	chr5	10236621	10236621	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgaaatataaaatttggcaGatccatgcacaccttctcgc	6	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	10236621	10236621	G	A	SNP	FAM173B	ENST00000511437	human	ensembl	69_37n	-1	known	missense	c.413	p.S138F	0.002	NULL	NULL	-	no_errors	FAM173B	HGNC	ENSG00000150756	24	0	0	36	22	37.93	-	-	-	A	10236621	G	A	10236621	3	1	658	1	0	0	0	0	1	0	0	0	5534	942	33	2	300	2	FAM173B	5	10236621	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8942778	10236621	170678639	177	56360										
DNAH5	0	genome.wustl.edu	37	chr5	13708288	13708288	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaatccaatgcatctcgcaGattttcgctcatgatgatgg	9	10	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	13708288	13708288	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.13282	p.L4428	0.999	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	61	0	0	57	17	22.97	-	-	-	A	13708288	G	A	13708288	2	1	658	1	0	0	0	0	0	0	0	1	4640	933	33	2		2	DNAH5	5	13708288	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3471667	13708288	167206972	178	56361										
ZFR	0	genome.wustl.edu	37	chr5	32387785	32387785	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttttgccaatactcccactCgcaaaactcctttcaaagct	3	15	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	32387785	32387785	C	G	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.2369	p.R790P	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	27	0	0	48	10	17.24	-	-	-	G	32387785	C	G	32387785	3	3	658	1	0	0	0	0	1	0	0	0	17755	884	31	3	883	3	ZFR	5	32387785	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	18679497	32387785	148527475	179	56362										
NIPBL	0	genome.wustl.edu	37	chr5	36995903	36995903	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgatagtgatgaagcttttGaatgtaagtatcacagaact	9	4	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	36995903	36995903	G	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	nonsense	c.3301	p.E1101*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	27	0	0	44	15	25.42	-	-	-	T	36995903	G	T	36995903	4	4	658	1	0	0	0	0	0	1	0	0	10500	1291	45	2	3339	2	NIPBL	5	36995903	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4608118	36995903	143919357	180	56363										
HEATR7B2	0	genome.wustl.edu	37	chr5	41018851	41018851	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccacatcatggtcttcagaAgttttcctagggcgtccatg	9	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	41018851	41018851	A	C	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.2615	p.L872R	0.575	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	57	0	0	77	15	16.3	-	-	-	C	41018851	A	C	41018851	3	2	658	1	0	0	0	0	1	0	0	0	7086	72	3	5	2210	5	HEATR7B2	5	41018851	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4022948	41018851	139896409	181	56364										
PLCXD3	0	genome.wustl.edu	37	chr5	41313823	41313823	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtgacaatattgatgccacTctctcctggcttctgcgtgc	9	12	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	41313823	41313823	T	A	SNP	PLCXD3	ENST00000328457	human	ensembl	69_37n	-1	known	missense	c.862	p.S288C	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	26	0	0	23	6	20.69	-	-	-	A	41313823	T	A	41313823	3	1	658	1	0	0	0	0	1	0	0	0	12117	1551	54	5	107	5	PLCXD3	5	41313823	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	294972	41313823	139601437	182	56365										
HMGCS1	0	genome.wustl.edu	37	chr5	43298179	43298179	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctccaactccacctgtaggtCtagcatttcctgtggcatat	7	13	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	43298179	43298179	C	G	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	missense	c.506	p.R169T	1.000	pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	37	0	0	60	7	10.45	-	-	-	G	43298179	C	G	43298179	3	3	658	1	0	0	0	0	1	0	0	0	7283	913	32	2	1088	2	HMGCS1	5	43298179	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1984356	43298179	137617081	183	56366										
TRIM23	0	genome.wustl.edu	37	chr5	64892900	64892900	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attgttggaatgggctgcatGaattcatcctgttttaactt	9	6	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	64892900	64892900	G	A	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	silent	c.1287	p.F429	0.999	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	38	0	0	45	9	16.67	-	-	-	A	64892900	G	A	64892900	2	1	658	1	0	0	0	0	0	0	0	1	16593	1281	45	2		2	TRIM23	5	64892900	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	21594721	64892900	116022360	184	56367										
BDP1	0	genome.wustl.edu	37	chr5	70808186	70808186	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcttcacagactcatgaatCtgataaaacagaagtccagg	7	9	4	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	70808186	70808186	C	G	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.4178	p.S1393C	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	39	0	0	43	12	21.82	-	-	-	G	70808186	C	G	70808186	3	3	658	1	0	0	0	0	1	0	0	0	1399	913	32	2	4248	2	BDP1	5	70808186	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5915286	70808186	110107074	185	56368										
CMYA5	0	genome.wustl.edu	37	chr5	79027850	79027850	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgccttcaacagataaatcaGagaaagcagaaattaagcca	7	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	79027850	79027850	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.3262	p.E1088K	0.086	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	26	0	0	46	11	19.3	-	-	-	A	79027850	G	A	79027850	3	1	658	1	0	0	0	0	1	0	0	0	3620	943	33	2	3268	2	CMYA5	5	79027850	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8219664	79027850	101887410	186	56369										
PPIP5K2	0	genome.wustl.edu	37	chr5	102483692	102483692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgtacgaaaaacaggctcaTatatatatgaagagtttatg	8	4	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	102483692	102483692	T	C	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	missense	c.700	p.Y234H	1.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	79	0	0	78	18	18.75	-	-	-	C	102483692	T	C	102483692	3	2	658	1	0	0	0	0	1	0	0	0	12410	1406	49	5	722	5	PPIP5K2	5	102483692	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	23455842	102483692	78431568	187	56370										
MAN2A1	0	genome.wustl.edu	37	chr5	109120580	109120580	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgtttcaacatcatgatgcTatcacaggaactgcaaaaga	7	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	109120580	109120580	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	silent	c.1713	p.A571	0.940	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	52	0	0	70	8	10.26	-	-	-	C	109120580	T	C	109120580	2	2	658	1	0	0	0	0	0	0	0	1	9285	1509	53	5		5	MAN2A1	5	109120580	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	6636888	109120580	71794680	188	56371										
MAN2A1	0	genome.wustl.edu	37	chr5	109202657	109202657	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatataagtgagatcaacttGagtccaatggaaatcagcac	8	7	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	109202657	109202657	G	C	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	missense	c.3393	p.L1131F	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	19	0	0	27	18	40	-	-	-	C	109202657	G	C	109202657	3	2	658	1	0	0	0	0	1	0	0	0	9285	1281	45	2	3479	2	MAN2A1	5	109202657	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	82077	109202657	71712603	189	56372										
TRIM36	0	genome.wustl.edu	37	chr5	114462415	114462416	+	Frame_Shift_Del	DEL	TA	TA	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgttggcatagggagaactcTattttcaggttcattagaag							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	114462415	114462416	TA	-	DEL	TRIM36	ENST00000282369	human	ensembl	69_37n	-1	known	frame_shift_del	c.1972_1971	p.N657fs	0.089:0.027	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_Znf_B-box,pfam_Fibronectin_type3,pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM36	HGNC	ENSG00000152503	57	0	0	67	11	14.1	-	-	-	-	114462416	TA	-	114462415	7	5	658	1	0	1	0	1	0	0	0	0	16606	1530	53	0	218	0	TRIM36	5	114462415	Frame_Shift_Del	DEL	TA	TCGA-C8-A26Y-01A-11D-A16D-09	5259758	114462415	66452845	190	56373										
SRFBP1	0	genome.wustl.edu	37	chr5	121356179	121356179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctctggtaacagtgatggcgGagaagaattttgtgaagagg	15	4	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	121356179	121356179	G	A	SNP	SRFBP1	ENST00000339397	human	ensembl	69_37n	1	known	missense	c.749	p.G250E	0.073	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304	20	0	0	25	8	24.24	-	-	-	A	121356179	G	A	121356179	3	1	658	1	0	0	0	0	1	0	0	0	15235	1174	41	2	771	2	SRFBP1	5	121356179	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6893764	121356179	59559081	191	56374										
SNCAIP	0	genome.wustl.edu	37	chr5	121786788	121786788	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctggatggccacagcccatCtcccacctcagagagcagcg	10	17	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	121786788	121786788	C	G	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.2387	p.S796C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	48	0	0	36	8	18.18	-	-	-	G	121786788	C	G	121786788	3	3	658	1	0	0	0	0	1	0	0	0	14930	913	32	2	2280	2	SNCAIP	5	121786788	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	430609	121786788	59128472	192	56375										
FBN2	0	genome.wustl.edu	37	chr5	127610376	127610376	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtttgacattcatcaaggtCtgaaattagagagaagccag	10	6	3	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	127610376	127610376	C	G	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	splice_site	c.7595-1	e60-1	1.000	-	-	-	no_errors	FBN2	HGNC	ENSG00000138829	28	0	0	38	7	15.56	-	-	-	G	127610376	C	G	127610376	5	3	658	1	0	0	0	0	0	0	1	0	5749	927	32	2	1168	2	FBN2	5	127610376	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5823588	127610376	53304884	193	56376										
CHSY3	0	genome.wustl.edu	37	chr5	129243966	129243966	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccacatattggtgaatgcctTagagaaatgtacacgactca	8	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	129243966	129243966	T	C	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	silent	c.999	p.L333	0.059	pfam_Chond_GalNAc,pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	72	0	0	76	21	21.65	-	-	-	C	129243966	T	C	129243966	2	2	658	1	0	0	0	0	0	0	0	1	3442	1741	61	5		5	CHSY3	5	129243966	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1633590	129243966	51671294	194	56377										
CATSPER3	0	genome.wustl.edu	37	chr5	134305689	134305689	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ataatgagccgtttctttaaGataattatgattagcactgt	7	5	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	134305689	134305689	G	C	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	missense	c.159	p.K53N	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	93	0	0	69	21	23.08	-	-	-	C	134305689	G	C	134305689	3	2	658	1	0	0	0	0	1	0	0	0	2714	933	33	2	165	2	CATSPER3	5	134305689	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5061723	134305689	46609571	195	56378										
TRPC7	0	genome.wustl.edu	37	chr5	135583271	135583271	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaccatgaacttgaagatatCtttcacagttctccctagcg	7	11	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	135583271	135583271	C	G	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	missense	c.1732	p.D578H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	34	0	0	35	15	30	-	-	-	G	135583271	C	G	135583271	3	3	658	1	0	0	0	0	1	0	0	0	16680	913	32	2	880	2	TRPC7	5	135583271	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1277582	135583271	45331989	196	56379										
PCDHA12	0	genome.wustl.edu	37	chr5	140255159	140255159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcggccagctccactactcCgtctacgaggaggccaaaca	10	15	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	140255159	140255159	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	1	known	silent	c.102	p.S34	0.029	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	36	0	0	27	9	25	-	-	-	T	140255159	C	T	140255159	2	4	658	1	0	0	0	0	0	0	0	1	11595	639	23	1		1	PCDHA12	5	140255159	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4671888	140255159	40660101	197	56380										
PCDHB16	0	genome.wustl.edu	37	chr5	140562820	140562820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atctggaactgctcaggtccGtattgaagtggtggacatca	12	8	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	140562820	140562820	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.686	p.R229H	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	24	0	0	16	8	33.33	-	-	-	A	140562820	G	A	140562820	3	1	658	1	0	0	0	0	1	0	0	0	11614	1145	40	1	688	1	PCDHB16	5	140562820	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	307661	140562820	40352440	198	56381										
PCDHB16	0	genome.wustl.edu	37	chr5	140564255	140564255	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcctcttttcggtgctcctGttcgtggcggtgcggctgtg	14	11	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	140564255	140564255	G	C	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	silent	c.2121	p.L707	0.014	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	28	0	0	23	9	28.12	-	-	-	C	140564255	G	C	140564255	2	2	658	1	0	0	0	0	0	0	0	1	11614	1364	48	4		4	PCDHB16	5	140564255	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1435	140564255	40351005	199	56382										
PCDHB14	0	genome.wustl.edu	37	chr5	140605262	140605262	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgggtcgctgctcggtgcccGagggtccctttccagggcat	15	13	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	140605262	140605262	G	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	nonsense	c.2185	p.E729*	0.015	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	53	0	0	30	13	30.23	-	-	-	T	140605262	G	T	140605262	4	4	658	1	0	0	0	0	0	1	0	0	11612	1059	37	3	2187	3	PCDHB14	5	140605262	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	41007	140605262	40309998	200	56383										
PCDHGB1	0	genome.wustl.edu	37	chr5	140729835	140729835	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagagttcctgaaatgcagaGagccagagaagccgaaatga	13	7	0	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	140729835	140729835	G	C	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.8	p.R3T	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	26	0	0	16	7	30.43	-	-	-	C	140729835	G	C	140729835	3	2	658	1	0	0	0	0	1	0	0	0	11635	942	33	2	10	2	PCDHGB1	5	140729835	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	124573	140729835	40185425	201	56384										
ARHGAP26	0	genome.wustl.edu	37	chr5	142513542	142513542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcgtttgcagatatttaacaCcgtgcccgatatgcctctca	7	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	142513542	142513542	C	T	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.1709	p.T570I	0.996	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	20	0	0	13	8	36.36	-	-	-	T	142513542	C	T	142513542	3	4	658	1	0	0	0	0	1	0	0	0	877	507	18	4	1783	4	ARHGAP26	5	142513542	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1783707	142513542	38401718	202	56385										
RBM27	0	genome.wustl.edu	37	chr5	145610304	145610304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtctgcaccacctccaaactCttctgagcagtattcctctg	6	15	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	145610304	145610304	C	G	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.674	p.S225C	1.000	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	37	0	0	48	16	24.62	-	-	-	G	145610304	C	G	145610304	3	3	658	1	0	0	0	0	1	0	0	0	13210	913	32	2	696	2	RBM27	5	145610304	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3096762	145610304	35304956	203	56386										
SPINK5	0	genome.wustl.edu	37	chr5	147475426	147475426	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtaaaacagatcaaaatttGggaaaagctgaagaaaaaac	8	4	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	147475426	147475426	G	A	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	silent	c.840	p.L280	0.002	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	49	0	0	39	9	18.75	-	-	-	A	147475426	G	A	147475426	2	1	658	1	0	0	0	0	0	0	0	1	15153	1339	47	4		4	SPINK5	5	147475426	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1865122	147475426	33439834	204	56387										
ABLIM3	0	genome.wustl.edu	37	chr5	148630048	148630048	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcctccctgcctgcctacCgaagaaatgggctgcacagg	11	15	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	148630048	148630048	C	T	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	nonsense	c.1768	p.R590*	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	64	0	0	74	22	22.92	-	-	-	T	148630048	C	T	148630048	4	4	658	1	0	0	0	0	0	1	0	0	96	644	23	1	1842	1	ABLIM3	5	148630048	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1154622	148630048	32285212	205	56388										
GPX3	0	genome.wustl.edu	37	chr5	150406533	150406533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctttccctgcaaccaatttgGaaaacaggaaccaggagaga	9	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	150406533	150406533	G	A	SNP	GPX3	ENST00000388825	human	ensembl	69_37n	1	known	missense	c.314	p.G105E	1.000	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	pseudogene	GPX3	HGNC	ENSG00000211445	47	0	0	51	10	16.39	-	-	-	A	150406533	G	A	150406533	3	1	658	1	0	0	0	0	1	0	0	0	6792	1174	41	2	324	2	GPX3	5	150406533	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1776485	150406533	30508727	206	56389										
FAT2	0	genome.wustl.edu	37	chr5	150901470	150901470	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caggctataggtcagcgtgtCctgggggtctcggtctgtgg	17	9	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	150901470	150901470	C	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.10684	p.D3562H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	24	0	0	24	7	22.58	-	-	-	G	150901470	C	G	150901470	3	3	658	1	0	0	0	0	1	0	0	0	5736	855	30	2	2389	2	FAT2	5	150901470	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	494937	150901470	30013790	207	56390										
FAM114A2	0	genome.wustl.edu	37	chr5	153409079	153409079	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acagcagtagagatggtagaGaatacaccaaatgccccagc	10	10	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	153409079	153409079	G	C	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.465	p.F155L	0.997	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	44	0	0	42	8	16	-	-	-	C	153409079	G	C	153409079	3	2	658	1	0	0	0	0	1	0	0	0	5444	933	33	2	1092	2	FAM114A2	5	153409079	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2507609	153409079	27506181	208	56391										
SLU7	0	genome.wustl.edu	37	chr5	159842242	159842242	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttctttggttcttccaaactCatttctttggaccccgatag	6	11	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	159842242	159842242	C	A	SNP	SLU7	ENST00000297151	human	ensembl	69_37n	-1	known	missense	c.60	p.M20I	1.000	NULL	pfam_Slu7,superfamily_Znf_CCHC	-	no_errors	SLU7	HGNC	ENSG00000164609	76	0	0	87	70	44.3	-	-	-	A	159842242	C	A	159842242	3	1	658	1	0	0	0	0	1	0	0	0	14844	826	29	2	1760	2	SLU7	5	159842242	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6433163	159842242	21073018	209	56392										
DOCK2	0	genome.wustl.edu	37	chr5	169423141	169423141	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaaaccatgaaccagaagttCctagaacacacgaactttga	7	10	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	169423141	169423141	C	G	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.3045	p.F1015L	0.941	superfamily_ARM-type_fold,superfamily_Ferritin/RR-like	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	40	0	0	29	21	42	-	-	-	G	169423141	C	G	169423141	3	3	658	1	0	0	0	0	1	0	0	0	4722	854	30	2	3163	2	DOCK2	5	169423141	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9580899	169423141	11492119	210	56393										
COL23A1	0	genome.wustl.edu	37	chr5	177676193	177676193	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggctctcctgggtctcctttCtgtcctttggggccctgaaa	11	13	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	177676193	177676193	C	G	SNP	COL23A1	ENST00000390654	human	ensembl	69_37n	-1	known	missense	c.1074	p.Q358H	0.074	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767	41	0	0	47	29	38.16	-	-	-	G	177676193	C	G	177676193	3	3	658	1	0	0	0	0	1	0	0	0	3712	912	32	2	592	2	COL23A1	5	177676193	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8253052	177676193	3239067	211	56394										
RNF130	0	genome.wustl.edu	37	chr5	179405246	179405246	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcattctgcttatagctctCtatgcagactgcacaatgat	6	10	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	179405246	179405246	C	G	SNP	RNF130	ENST00000521389	human	ensembl	69_37n	-1	known	missense	c.805	p.E269Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF130	HGNC	ENSG00000113269	46	0	0	60	35	36.46	-	-	-	G	179405246	C	G	179405246	3	3	658	1	0	0	0	0	1	0	0	0	13524	922	32	2	474	2	RNF130	5	179405246	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1729053	179405246	1510014	212	56395										
GFPT2	0	genome.wustl.edu	37	chr5	179755315	179755315	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctgggtagtggacactcttGaaaaccagcgcgaatgcacc	11	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	5	179755315	179755315	G	A	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	silent	c.558	p.F186	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	57	0	0	68	15	17.86	-	-	-	A	179755315	G	A	179755315	2	1	658	1	0	0	0	0	0	0	0	1	6398	1281	45	2		2	GFPT2	5	179755315	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	350069	179755315	1159945	213	56396										
DSP	0	genome.wustl.edu	37	chr6	7580286	7580286	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctctgagataatgcagaagaAgcagcatctggagatagaac	11	7	2	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	7580286	7580286	A	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.3863	p.K1288T	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	10	0	0	11	7	38.89	-	-	-	C	7580286	A	C	7580286	3	2	658	1	0	0	0	0	1	0	0	0	4816	72	3	5	3953	5	DSP	6	7580286	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09		7580286	163534781	214	56397										
DSP	0	genome.wustl.edu	37	chr6	7583116	7583116	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaagactcaatattcccgcaAggaggaggctattaggaaga	12	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	7583116	7583116	A	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.5621	p.K1874T	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	36	0	0	38	9	19.15	-	-	-	C	7583116	A	C	7583116	3	2	658	1	0	0	0	0	1	0	0	0	4816	72	3	5	5715	5	DSP	6	7583116	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2830	7583116	163531951	215	56398										
DSP	0	genome.wustl.edu	37	chr6	7585120	7585120	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagggccttgttgacaggaAgttctttgatcagtaccgat	11	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	7585120	7585120	A	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.7625	p.K2542M	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	33	0	0	37	9	19.15	-	-	-	T	7585120	A	T	7585120	3	4	658	1	0	0	0	0	1	0	0	0	4816	72	3	5	7719	5	DSP	6	7585120	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2004	7585120	163529947	216	56399										
NEDD9	0	genome.wustl.edu	37	chr6	11185572	11185572	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agctggttgctggagttcatGactttgttgcgaatgtcctg	13	7	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	11185572	11185572	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	silent	c.2328	p.V776	0.997	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	76	0	0	68	31	30.69	-	-	-	A	11185572	G	A	11185572	2	1	658	1	0	0	0	0	0	0	0	1	10385	1277	45	2		2	NEDD9	6	11185572	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3600452	11185572	159929495	217	56400										
PHACTR1	0	genome.wustl.edu	37	chr6	13287299	13287299	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgtttgtttccttaggtttCaccgaccttaacagtcgaat	7	9	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	13287299	13287299	C	T	SNP	PHACTR1	ENST00000379335	human	ensembl	69_37n	1	known	missense	c.424	p.H142Y	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	112	0	0	104	69	39.66	-	-	-	T	13287299	C	T	13287299	3	4	658	1	0	0	0	0	1	0	0	0	11883	826	29	2	1782	2	PHACTR1	6	13287299	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2101727	13287299	157827768	218	56401										
GMNN	0	genome.wustl.edu	37	chr6	24785964	24785965	+	Frame_Shift_Del	DEL	AG	AG	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gattctctagtggaagactcAgaaattggcacgtgtgctga							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	24785964	24785965	AG	-	DEL	GMNN	ENST00000230056	human	ensembl	69_37n	1	known	frame_shift_del	c.567_568	p.E190fs	0.088:0.092	pfam_Geminin_fam	pfam_Geminin_fam	-	no_errors	GMNN	HGNC	ENSG00000112312	38	0	0	43	7	14	-	-	-	-	24785965	AG	-	24785964	7	5	658	1	0	1	0	1	0	0	0	0	6545	175	7	0	589	0	GMNN	6	24785964	Frame_Shift_Del	DEL	AG	TCGA-C8-A26Y-01A-11D-A16D-09	11498665	24785964	146329103	219	56402										
HIST1H2AA	0	genome.wustl.edu	37	chr6	25726392	25726392	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggctttatggtggtgactctCagtcttcttgggcagcagca	13	9	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	25726392	25726392	C	G	SNP	HIST1H2AA	ENST00000297012	human	ensembl	69_37n	-1	known	missense	c.364	p.E122Q	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508	160	0	0	200	57	22.18	-	-	-	G	25726392	C	G	25726392	3	3	658	1	0	0	0	0	1	0	0	0	7179	835	29	2	35	2	HIST1H2AA	6	25726392	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	940428	25726392	145388675	220	56403										
VARS	0	genome.wustl.edu	37	chr6	31752262	31752262	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagagcagggtgcgacctgtCagctccttcttatccacctg	11	13	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	31752262	31752262	C	T	SNP	VARS	ENST00000375663	human	ensembl	69_37n	-1	known	silent	c.1485	p.L495	0.365	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS	HGNC	ENSG00000204394	16	0	0	23	9	27.27	-	-	-	T	31752262	C	T	31752262	2	4	658	1	0	0	0	0	0	0	0	1	17220	813	29	2		2	VARS	6	31752262	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6025870	31752262	139362805	221	56404										
TNXB	0	genome.wustl.edu	37	chr6	32049445	32049445	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggggggctcctctttcctctCtggagctgtaaacaaggaga	13	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	32049445	32049445	C	G	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.3742	p.E1248Q	0.011	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	17	0	0	13	9	40.91	-	-	-	G	32049445	C	G	32049445	3	3	658	1	0	0	0	0	1	0	0	0	16441	922	32	2	11111	2	TNXB	6	32049445	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	297183	32049445	139065622	222	56405										
ITPR3	0	genome.wustl.edu	37	chr6	33647831	33647831	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgccgagggcaaaaacgtctAcactgagatcaagtgcacct	10	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	33647831	33647831	A	T	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.4145	p.Y1382F	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	15	0	0	16	6	27.27	-	-	-	T	33647831	A	T	33647831	3	4	658	1	0	0	0	0	1	0	0	0	7976	391	14	5	4267	5	ITPR3	6	33647831	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	1598386	33647831	137467236	223	56406										
MAPK14	0	genome.wustl.edu	37	chr6	36043611	36043611	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttagcagtttgtctgttcctCttctgccctttagattctgg	8	10	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	36043611	36043611	C	T	SNP	MAPK14	ENST00000491957	human	ensembl	69_37n	1	known	missense	c.509	p.S170F	0.007	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK14	HGNC	ENSG00000112062	46	0	0	44	18	29.03	-	-	-	T	36043611	C	T	36043611	3	4	658	1	0	0	0	0	1	0	0	0	9347	928	32	2		2	MAPK14	6	36043611	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2395780	36043611	135071456	224	56407										
PNPLA1	0	genome.wustl.edu	37	chr6	36259107	36259107	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctttgcagatgagtatctCagagtcctcaacgtgggtgt	11	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	36259107	36259107	C	T	SNP	PNPLA1	ENST00000457797	human	ensembl	69_37n	1	known	silent	c.216	p.L72	0.817	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316	31	0	0	26	11	29.73	-	-	-	T	36259107	C	T	36259107	2	4	658	1	0	0	0	0	0	0	0	1	12238	813	29	2		2	PNPLA1	6	36259107	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	215496	36259107	134855960	225	56408										
DNAH8	0	genome.wustl.edu	37	chr6	38835879	38835879	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agaaatattctgtctgtattGaggactcttggatctcaaaa	8	6	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	38835879	38835879	G	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.6084	p.L2028F	0.970	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	86	0	0	85	22	20.37	-	-	-	C	38835879	G	C	38835879	3	2	658	1	0	0	0	0	1	0	0	0	4642	1281	45	2	6258	2	DNAH8	6	38835879	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2576772	38835879	132279188	226	56409										
UBR2	0	genome.wustl.edu	37	chr6	42644559	42644559	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagaaaatcccccttgtgaaGaagaatcagcagttcttgct	8	9	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	42644559	42644559	G	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	nonsense	c.4426	p.E1476*	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	49	0	0	49	20	28.99	-	-	-	T	42644559	G	T	42644559	4	4	658	1	0	0	0	0	0	1	0	0	16999	943	33	2	4730	2	UBR2	6	42644559	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3808680	42644559	128470508	227	56410										
KLHDC3	0	genome.wustl.edu	37	chr6	42985434	42985434	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctctatgcctttgacgtcaGtgagtatggatctcagagag	12	8	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	42985434	42985434	G	C	SNP	KLHDC3	ENST00000326974	human	ensembl	69_37n	1	known	splice_site	c.331+1	e2+1	1.000	-	-	-	no_errors	KLHDC3	HGNC	ENSG00000124702	44	0	0	39	12	23.53	-	-	-	C	42985434	G	C	42985434	5	2	658	1	0	0	0	0	0	0	1	0	8410	1043	36	4	338	4	KLHDC3	6	42985434	Splice_Site	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	340875	42985434	128129633	228	56411										
CUL7	0	genome.wustl.edu	37	chr6	43005599	43005599	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gactgcataggacagcacctGgggccggtcgtcatggcgtc	15	12	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	43005599	43005599	G	A	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	nonsense	c.5176	p.Q1726*	0.835	smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	24	0	0	14	6	30	-	-	-	A	43005599	G	A	43005599	4	1	658	1	0	0	0	0	0	1	0	0	4091	1357	47	4	176	4	CUL7	6	43005599	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	20165	43005599	128109468	229	56412										
TTBK1	0	genome.wustl.edu	37	chr6	43230780	43230780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggacttccctccaggggctGagcccagcacatcgggcacc	12	16	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	43230780	43230780	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	missense	c.1678	p.E560K	0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	19	0	0	9	5	35.71	-	-	-	A	43230780	G	A	43230780	3	1	658	1	0	0	0	0	1	0	0	0	16773	1291	45	2	1724	2	TTBK1	6	43230780	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	225181	43230780	127884287	230	56413										
ABCC10	0	genome.wustl.edu	37	chr6	43417205	43417205	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagtgtggaccagaagacaGaccagctgctccagcagacc	11	13	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	43417205	43417205	G	C	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.4249	p.D1417H	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	17	0	0	19	6	24	-	-	-	C	43417205	G	C	43417205	3	2	658	1	0	0	0	0	1	0	0	0	50	942	33	2	4239	2	ABCC10	6	43417205	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	186425	43417205	127697862	231	56414										
GPR116	0	genome.wustl.edu	37	chr6	46839704	46839704	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cactgggttccatcagccttGagggtgtatctgctgcagct	12	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	46839704	46839704	G	T	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.1287	p.L429	0.124	pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	52	0	0	54	23	29.87	-	-	-	T	46839704	G	T	46839704	2	4	658	1	0	0	0	0	0	0	0	1	6683	1277	45	2		2	GPR116	6	46839704	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3422499	46839704	124275363	232	56415										
KLHL31	0	genome.wustl.edu	37	chr6	53519444	53519444	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atttgttcaaatgtaagtttCataaactgatccgattctgc	6	7	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	53519444	53519444	C	G	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	missense	c.627	p.M209I	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	52	0	0	51	23	31.08	-	-	-	G	53519444	C	G	53519444	3	3	658	1	0	0	0	0	1	0	0	0	8438	826	29	2	1285	2	KLHL31	6	53519444	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6679740	53519444	117595623	233	56416										
DST	0	genome.wustl.edu	37	chr6	56335971	56335971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctggtctttatcaattctCctgaagaagtccatcactcg	6	12	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	56335971	56335971	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.22161	p.R7387S	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	45	0	0	59	18	23.38	-	-	-	G	56335971	C	G	56335971	3	3	658	1	0	0	0	0	1	0	0	0	4818	854	30	2	1166	2	DST	6	56335971	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2816527	56335971	114779096	234	56417										
DST	0	genome.wustl.edu	37	chr6	56504379	56504379	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tacaaaattatggagtgtatCaaggtgccgttcttgattcc	9	7	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	56504379	56504379	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.2629	p.D877N	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	48	0	0	39	11	22	-	-	-	T	56504379	C	T	56504379	3	4	658	1	0	0	0	0	1	0	0	0	4818	826	29	2	19350	2	DST	6	56504379	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	168408	56504379	114610688	235	56418										
EYS	0	genome.wustl.edu	37	chr6	64431491	64431491	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtatttgtgtccagagaactCattttagtggaggccttttc	10	7	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	64431491	64431491	C	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.8499	p.M2833I	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	90	0	0	92	23	20	-	-	-	A	64431491	C	A	64431491	3	1	658	1	0	0	0	0	1	0	0	0	5369	826	29	2	1002	2	EYS	6	64431491	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7927112	64431491	106683576	236	56419										
FILIP1	0	genome.wustl.edu	37	chr6	76023499	76023499	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttggcaatttggtgcttgatCtcctctagttgttgagagag	12	6	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	76023499	76023499	C	T	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	silent	c.2049	p.E683	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	74	0	0	58	31	34.83	-	-	-	T	76023499	C	T	76023499	2	4	658	1	0	0	0	0	0	0	0	1	5940	912	32	2		2	FILIP1	6	76023499	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	11592008	76023499	95091568	237	56420										
LCA5	0	genome.wustl.edu	37	chr6	80223093	80223093	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtatcttttacccttttctCagttgcccgttctttctctt	4	12	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	80223093	80223093	C	T	SNP	LCA5	ENST00000369846	human	ensembl	69_37n	-1	known	missense	c.556	p.E186K	1.000	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338	125	0	0	139	55	28.35	-	-	-	T	80223093	C	T	80223093	3	4	658	1	0	0	0	0	1	0	0	0	8710	835	29	2	1561	2	LCA5	6	80223093	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4199594	80223093	90891974	238	56421										
USP45	0	genome.wustl.edu	37	chr6	99936136	99936136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctactttctttgatctcattCatcagatcagtaagagtata	5	8	5	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	99936136	99936136	C	T	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.654	p.M218I	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	28	0	0	42	13	23.64	-	-	-	T	99936136	C	T	99936136	3	4	658	1	0	0	0	0	1	0	0	0	17173	826	29	2	1838	2	USP45	6	99936136	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	19713043	99936136	71178931	239	56422										
AKD1	0	genome.wustl.edu	37	chr6	109837846	109837846	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcatcatctctaacaacattCtaaggaagaaaatattccct	3	10	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	109837846	109837846	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	splice_site	c.3634-1	e29-1	0.973	-	-	-	no_errors	AKD1	HGNC	ENSG00000155085	83	0	0	90	20	18.18	-	-	-	T	109837846	C	T	109837846	5	4	658	1	0	0	0	0	0	0	1	0	460	927	32	2	2150	2	AKD1	6	109837846	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9901710	109837846	61277221	240	56423										
LAMA4	0	genome.wustl.edu	37	chr6	112441587	112441587	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcggccatgggccaaaaataGagtcatgaagtcattctctt	10	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	112441587	112441587	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	69_37n	-1	known	silent	c.4564	p.L1522	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EGF-like,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769	69	0	0	45	21	31.82	-	-	-	A	112441587	G	A	112441587	2	1	658	1	0	0	0	0	0	0	0	1	8662	933	33	2		2	LAMA4	6	112441587	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2603741	112441587	58673480	241	56424										
TSPYL4	0	genome.wustl.edu	37	chr6	116574421	116574421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcagtaacccagaaacctgGgatattctggataatgaaac	10	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	116574421	116574421	G	A	SNP	TSPYL4	ENST00000420283	human	ensembl	69_37n	-1	known	missense	c.751	p.P251S	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL4	HGNC	ENSG00000187189	41	0	0	29	8	21.62	-	-	-	A	116574421	G	A	116574421	3	1	658	1	0	0	0	0	1	0	0	0	16757	1232	43	4	497	4	TSPYL4	6	116574421	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4132834	116574421	54540646	242	56425										
SMPDL3A	0	genome.wustl.edu	37	chr6	123130485	123130485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggcctttcagatttgtgcaAttatgaatcttgataatatt	7	5	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	123130485	123130485	A	G	SNP	SMPDL3A	ENST00000368440	human	ensembl	69_37n	1	known	missense	c.1294	p.I432V	1.000	pirsf_ASM-like_Pdiesterase_prd	pfam_Metallo_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3A	HGNC	ENSG00000172594	25	0	0	24	10	29.41	-	-	-	G	123130485	A	G	123130485	3	3	658	1	0	0	0	0	1	0	0	0	14897	101	4	5	1324	5	SMPDL3A	6	123130485	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	6556064	123130485	47984582	243	56426										
EPB41L2	0	genome.wustl.edu	37	chr6	131184837	131184837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcgtttctcaattcttgtttCagaaattccaccttttacag	5	10	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	131184837	131184837	C	T	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.2851	p.E951K	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	93	0	0	69	23	24.47	-	-	-	T	131184837	C	T	131184837	3	4	658	1	0	0	0	0	1	0	0	0	5190	835	29	2	174	2	EPB41L2	6	131184837	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8054352	131184837	39930230	244	56427										
SF3B5	0	genome.wustl.edu	37	chr6	144416385	144416385	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcagagtctcagttctcctCgggcttgtcggctggcggtc	15	12	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	144416385	144416385	C	G	SNP	SF3B5	ENST00000367569	human	ensembl	69_37n	-1	known	missense	c.250	p.E84Q	1.000	pirsf_Splicing_factor_3B_subunit_5	pfam_SF3b5/RDS3-10,pirsf_Splicing_factor_3B_subunit_5	-	no_errors	SF3B5	HGNC	ENSG00000169976	47	0	0	38	6	13.64	-	-	-	G	144416385	C	G	144416385	3	3	658	1	0	0	0	0	1	0	0	0	14242	893	31	3	14	3	SF3B5	6	144416385	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	13231548	144416385	26698682	245	56428										
UTRN	0	genome.wustl.edu	37	chr6	144860468	144860468	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaagtacatgctgaaaaactCaaatggctgaatagaactga	9	6	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	144860468	144860468	C	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.6408	p.L2136	0.947	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	29	0	0	35	15	30	-	-	-	G	144860468	C	G	144860468	2	3	658	1	0	0	0	0	0	0	0	1	17200	813	29	2		2	UTRN	6	144860468	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	444083	144860468	26254599	246	56429										
SHPRH	0	genome.wustl.edu	37	chr6	146264518	146264518	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggcttacgatctatctgatCaagttcaccacatatacact	5	11	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	146264518	146264518	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.1999	p.D667N	1.000	superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Znf_PHD	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	33	0	0	33	15	30.61	-	-	-	T	146264518	C	T	146264518	3	4	658	1	0	0	0	0	1	0	0	0	14380	826	29	2	3184	2	SHPRH	6	146264518	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1404050	146264518	24850549	247	56430										
PLEKHG1	0	genome.wustl.edu	37	chr6	151152844	151152844	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcgtttcctgtgagcaaggAtgatgtgccagacaggctgc	14	9	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	151152844	151152844	A	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.2597	p.D866V	0.896	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	21	0	0	9	7	41.18	-	-	-	T	151152844	A	T	151152844	3	4	658	1	0	0	0	0	1	0	0	0	12142	333	12	5	2651	5	PLEKHG1	6	151152844	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4888326	151152844	19962223	248	56431										
PDE10A	0	genome.wustl.edu	37	chr6	165846521	165846521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgatacagctcgagaatacCaatcaagtcaccaattgcag	7	12	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	165846521	165846521	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.634	p.G212S	0.999	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	37	0	0	26	13	33.33	-	-	-	T	165846521	C	T	165846521	3	4	658	1	0	0	0	0	1	0	0	0	11703	594	21	4	1799	4	PDE10A	6	165846521	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	14693677	165846521	5268546	249	56432										
UNC93A	0	genome.wustl.edu	37	chr6	167721350	167721350	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggcagtgttcttcgtattcTctggcctgtggggcgtggca	15	9	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	6	167721350	167721350	T	A	SNP	UNC93A	ENST00000230256	human	ensembl	69_37n	1	known	missense	c.1060	p.S354T	0.005	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494	35	0	0	30	12	27.91	-	-	-	A	167721350	T	A	167721350	3	1	658	1	0	0	0	0	1	0	0	0	17093	1551	54	5	1086	5	UNC93A	6	167721350	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1874829	167721350	3393717	250	56433										
CYTH3	0	genome.wustl.edu	37	chr7	6204633	6204633	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acatgtcatagaagggatctCtgctgatactggctctggtg	12	8	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	6204633	6204633	C	G	SNP	CYTH3	ENST00000350796	human	ensembl	69_37n	-1	known	missense	c.1142	p.R381T	1.000	smart_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH3	HGNC	ENSG00000008256	44	0	0	104	30	22.39	-	-	-	G	6204633	C	G	6204633	3	3	658	1	0	0	0	0	1	0	0	0	4236	913	32	2	61	2	CYTH3	7	6204633	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		6204633	152934030	251	56434										
ANKMY2	0	genome.wustl.edu	37	chr7	16650260	16650260	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagcttatgtaatgcatcttCatagccaatacttcattcat	4	10	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	16650260	16650260	C	T	SNP	ANKMY2	ENST00000306999	human	ensembl	69_37n	-1	known	missense	c.660	p.M220I	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY2	HGNC	ENSG00000106524	64	0	0	73	27	27	-	-	-	T	16650260	C	T	16650260	3	4	658	1	0	0	0	0	1	0	0	0	635	826	29	2	685	2	ANKMY2	7	16650260	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10445627	16650260	142488403	252	56435										
AHR	0	genome.wustl.edu	37	chr7	17378965	17378965	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atactgcaccgatgggaaatGatactatcctgaaacatgag	9	8	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	17378965	17378965	G	A	SNP	AHR	ENST00000242057	human	ensembl	69_37n	1	known	missense	c.1516	p.D506N	0.003	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHR	HGNC	ENSG00000106546	21	0	0	32	7	17.95	-	-	-	A	17378965	G	A	17378965	3	1	658	1	0	0	0	0	1	0	0	0	416	1290	45	2	1554	2	AHR	7	17378965	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	728705	17378965	141759698	253	56436										
TOMM7	0	genome.wustl.edu	37	chr7	22852775	22852775	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gattgcctccaaatccagaaGaccaaataatcctttatccc	4	13	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	22852775	22852775	G	T	SNP	TOMM7	ENST00000372879	human	ensembl	69_37n	-1	putative	missense	c.319	p.L107I	0.927	NULL	pfam_Tom7	-	no_errors	TOMM7	HGNC	ENSG00000196683	29	0	0	44	13	22.41	-	-	-	T	22852775	G	T	22852775	3	4	658	1	0	0	0	0	1	0	0	0	16457	957	33	2		2	TOMM7	7	22852775	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5473810	22852775	136285888	254	56437										
CREB5	0	genome.wustl.edu	37	chr7	28843891	28843891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acaccatgggacacatgatgGagatgatgggctcccggcag	14	10	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	28843891	28843891	G	A	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	missense	c.778	p.E260K	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	108	0	0	56	47	45.63	-	-	-	A	28843891	G	A	28843891	3	1	658	1	0	0	0	0	1	0	0	0	3890	1175	41	2	859	2	CREB5	7	28843891	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5991116	28843891	130294772	255	56438										
CCDC129	0	genome.wustl.edu	37	chr7	31617842	31617842	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcagtctctccaagcctgtGatgatttgctaccttatcct	6	12	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	31617842	31617842	G	T	SNP	CCDC129	ENST00000451887	human	ensembl	69_37n	1	known	missense	c.1042	p.D348Y	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	32	0	0	53	11	17.19	-	-	-	T	31617842	G	T	31617842	3	4	658	1	0	0	0	0	1	0	0	0	2789	1290	45	2	990	2	CCDC129	7	31617842	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2773951	31617842	127520821	256	56439										
BBS9	0	genome.wustl.edu	37	chr7	33388754	33388754	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caaccaccattagaattgacTtgtgatcagttcacctttga	6	10	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	33388754	33388754	T	C	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	silent	c.1404	p.T468	0.573	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	74	0	0	137	22	13.84	-	-	-	C	33388754	T	C	33388754	2	2	658	1	0	0	0	0	0	0	0	1	1346	1596	56	5		5	BBS9	7	33388754	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1770912	33388754	125749909	257	56440										
ELMO1	0	genome.wustl.edu	37	chr7	37262231	37262231	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaacttacctgcctcctctCatcaggagccttcaggaaaa	7	14	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	37262231	37262231	C	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	nonsense	c.769	p.E257*	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	35	0	0	41	15	26.79	-	-	-	A	37262231	C	A	37262231	4	1	658	1	0	0	0	0	0	1	0	0	5102	835	29	2	1466	2	ELMO1	7	37262231	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3873477	37262231	121876432	258	56441										
C7orf10	0	genome.wustl.edu	37	chr7	40535914	40535914	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aactgaccagcaagtggttaTatctttttgaaggcagtgga	11	6	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	40535914	40535914	T	C	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	1	known	missense	c.1039	p.Y347H	0.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	65	0	0	98	19	16.24	-	-	-	C	40535914	T	C	40535914	3	2	658	1	0	0	0	0	1	0	0	0	2399	1406	49	5	974	5	C7orf10	7	40535914	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	3273683	40535914	118602749	259	56442										
CCM2	0	genome.wustl.edu	37	chr7	45108170	45108170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcctggtcatcctggctgcaGagagcaaggtgagactttct	13	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	45108170	45108170	G	A	SNP	CCM2	ENST00000381112	human	ensembl	69_37n	1	known	missense	c.664	p.E222K	0.998	pfscan_PTyr_interaction_dom	pfscan_PTyr_interaction_dom	-	no_errors	CCM2	HGNC	ENSG00000136280	27	0	0	22	6	21.43	-	-	-	A	45108170	G	A	45108170	3	1	658	1	0	0	0	0	1	0	0	0	2937	943	33	2	716	2	CCM2	7	45108170	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4572256	45108170	114030493	260	56443										
WBSCR28	0	genome.wustl.edu	37	chr7	73279592	73279592	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcctgggcctggccttgctCagtgcctgggagcagctggg	18	12	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	73279592	73279592	C	A	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	silent	c.342	p.L114	0.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	61	0	0	66	36	35.29	-	-	-	A	73279592	C	A	73279592	2	1	658	1	0	0	0	0	0	0	0	1	17364	813	29	2		2	WBSCR28	7	73279592	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	28171422	73279592	85859071	261	56444										
TRIM73	0	genome.wustl.edu	37	chr7	75034314	75034314	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccaagccgagtgtgtgctgGaacagttcggcaatgaggac	14	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	75034314	75034314	G	T	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	1	known	nonsense	c.688	p.E230*	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	89	0	0	103	66	39.05	-	-	-	T	75034314	G	T	75034314	4	4	658	1	0	0	0	0	0	1	0	0	16642	1175	41	2	698	2	TRIM73	7	75034314	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1754722	75034314	84104349	262	56445										
HIP1	0	genome.wustl.edu	37	chr7	75192345	75192345	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccacagggctgatatgttctGacagggctgaggctcgcagg	15	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	75192345	75192345	G	C	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	nonsense	c.914	p.S305*	1.000	pfam_ANTH	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	48	0	0	45	28	38.36	-	-	-	C	75192345	G	C	75192345	4	2	658	1	0	0	0	0	0	1	0	0	7165	1294	45	2	2283	2	HIP1	7	75192345	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	158031	75192345	83946318	263	56446										
PTPN12	0	genome.wustl.edu	37	chr7	77221500	77221501	+	Splice_Site	DEL	AG	AG	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatttttttttttggatgacAgaaaaaatgtgagcgctatt							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	77221500	77221501	AG	-	DEL	PTPN12	ENST00000248594	human	ensembl	69_37n	1	known	splice_site_del	c.421-2_421-1	e6-1	1.000:1.000	-	-	-	no_errors	PTPN12	HGNC	ENSG00000127947	67	0	0	102	41	28.47	-	-	-	-	77221501	AG	-	77221500	8	5	658	1	0	1	0	1	0	0	1	0	12862	202	7	0	441	0	PTPN12	7	77221500	Splice_Site	DEL	AG	TCGA-C8-A26Y-01A-11D-A16D-09	2029155	77221500	81917163	264	56447										
SEMA3C	0	genome.wustl.edu	37	chr7	80394494	80394494	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaagacttccagctcctccaGaatgagctcgccactgacag	8	14	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	80394494	80394494	G	A	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	silent	c.1474	p.L492	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	34	0	0	48	14	22.58	-	-	-	A	80394494	G	A	80394494	2	1	658	1	0	0	0	0	0	0	0	1	14114	933	33	2		2	SEMA3C	7	80394494	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3172994	80394494	78744169	265	56448										
AKAP9	0	genome.wustl.edu	37	chr7	91714196	91714196	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcagggatttgacatagcatCagaaggccgaggagaagaaa	13	6	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	91714196	91714196	C	T	SNP	AKAP9	ENST00000435423	human	ensembl	69_37n	1	putative	nonsense	c.208	p.Q70*	0.994	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AKAP9	HGNC	ENSG00000127914	28	0	0	49	23	31.94	-	-	-	T	91714196	C	T	91714196	4	4	658	1	0	0	0	0	0	1	0	0	459	838	29	2	8912	2	AKAP9	7	91714196	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	11319702	91714196	67424467	266	56449										
CYP51A1	0	genome.wustl.edu	37	chr7	91747923	91747923	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcgatcaagtaaatttagatCcttgagctaaaatgagaaag	9	5	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	91747923	91747923	C	A	SNP	CYP51A1	ENST00000003100	human	ensembl	69_37n	-1	known	missense	c.1093	p.D365Y	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630	47	0	0	58	12	17.14	-	-	-	A	91747923	C	A	91747923	3	1	658	1	0	0	0	0	1	0	0	0	4226	855	30	2	448	2	CYP51A1	7	91747923	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	33727	91747923	67390740	267	56450										
ZNF394	0	genome.wustl.edu	37	chr7	99097527	99097527	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagctgcctaaagtgcagtcGagaagtttcggggtccggcg	15	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	99097527	99097527	G	C	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.190	p.R64G	0.060	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	24	0	0	20	13	39.39	-	-	-	C	99097527	G	C	99097527	3	2	658	1	0	0	0	0	1	0	0	0	17976	1066	37	3	1507	3	ZNF394	7	99097527	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7349604	99097527	60041136	268	56451										
CYP3A7	0	genome.wustl.edu	37	chr7	99315217	99315217	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctcttccattcttcatcctCagctatagagatggcatttt	5	11	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	99315217	99315217	C	T	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	missense	c.364	p.E122K	0.573	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	76	0	0	106	37	25.87	-	-	-	T	99315217	C	T	99315217	3	4	658	1	0	0	0	0	1	0	0	0	4212	835	29	2	1183	2	CYP3A7	7	99315217	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	217690	99315217	59823446	269	56452										
CYP3A4	0	genome.wustl.edu	37	chr7	99366023	99366023	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaatcaaatcttaaaagcttCttggtgttttccacaaaggg	7	7	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	99366023	99366023	C	G	SNP	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	missense	c.624	p.K208N	0.795	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	83	0	0	124	42	25.3	-	-	-	G	99366023	C	G	99366023	3	3	658	1	0	0	0	0	1	0	0	0	4209	912	32	2	915	2	CYP3A4	7	99366023	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	50806	99366023	59772640	270	56453										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99631175	99631175	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggagagagaggtccaagggaGaaggggaaaggattgggaag	21	2	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	99631175	99631175	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	silent	c.1047	p.E349	0.941	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	64	0	0	79	30	27.27	-	-	-	A	99631175	G	A	99631175	2	1	658	1	0	0	0	0	0	0	0	1	17782	933	33	2		2	ZKSCAN1	7	99631175	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	265152	99631175	59507488	271	56454										
EPHB4	0	genome.wustl.edu	37	chr7	100420101	100420101	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatcgagtcaggttcacagtCagctgggcgcactttttgta	11	9	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	100420101	100420101	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	69_37n	-1	known	silent	c.600	p.L200	0.482	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	13	0	0	20	7	25.93	-	-	-	T	100420101	C	T	100420101	2	4	658	1	0	0	0	0	0	0	0	1	5214	813	29	2		2	EPHB4	7	100420101	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	788926	100420101	58718562	272	56455										
MUC17	0	genome.wustl.edu	37	chr7	100678637	100678637	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcctgtggtcacttctaatGaagtcagttcatctcctaca	7	11	5	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	100678637	100678637	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.3940	p.E1314K	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	91	0	0	111	34	23.13	-	-	-	A	100678637	G	A	100678637	3	1	658	1	0	0	0	0	1	0	0	0	10046	1291	45	2	3950	2	MUC17	7	100678637	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	258536	100678637	58460026	273	56456										
SERPINE1	0	genome.wustl.edu	37	chr7	100773722	100773723	+	Frame_Shift_Ins	INS	-	-	A													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagggcatggcccccgcccINStccggcatctgtacaaggag							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	100773722	100773723	-	A	INS	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	frame_shift_ins	c.292_293	p.L98fs	0.984:0.986	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	16	0	0	23	8	25.81	-	-	-	A	100773723	-	A	100773722	7	5	658	1	0	1	1	0	0	0	0	0	14199	681	24	0	298	0	SERPINE1	7	100773722	Frame_Shift_Ins	INS	-	TCGA-C8-A26Y-01A-11D-A16D-09	95085	100773722	58364941	274	56457										
FBXL13	0	genome.wustl.edu	37	chr7	102572360	102572360	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcagtcagagacattcaactCttgcaagttcctacagtggc	9	11	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	102572360	102572360	C	G	SNP	FBXL13	ENST00000313221	human	ensembl	69_37n	-1	known	missense	c.745	p.E249Q	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL13	HGNC	ENSG00000161040	50	0	0	61	24	27.91	-	-	-	G	102572360	C	G	102572360	3	3	658	1	0	0	0	0	1	0	0	0	5755	922	32	2	1510	2	FBXL13	7	102572360	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1798638	102572360	56566303	275	56458										
LAMB4	0	genome.wustl.edu	37	chr7	107746285	107746285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccaggagggctgaaaacatCtccccgcatcttctgcatag	9	13	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	107746285	107746285	C	G	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.847	p.D283H	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	19	0	0	31	10	24.39	-	-	-	G	107746285	C	G	107746285	3	3	658	1	0	0	0	0	1	0	0	0	8667	913	32	2	4546	2	LAMB4	7	107746285	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5173925	107746285	51392378	276	56459										
KCND2	0	genome.wustl.edu	37	chr7	119914821	119914821	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagatgctctcattgtgctGaatgtgagtggcacccgctt	11	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	119914821	119914821	G	A	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	silent	c.135	p.L45	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	32	0	0	23	9	28.12	-	-	-	A	119914821	G	A	119914821	2	1	658	1	0	0	0	0	0	0	0	1	8073	1277	45	2		2	KCND2	7	119914821	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	12168536	119914821	39223842	277	56460										
FLNC	0	genome.wustl.edu	37	chr7	128477783	128477783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcgaggtgctggtctacatcGaggaccctgaaggccacacc	13	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	128477783	128477783	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	10	0	0	11	5	31.25	-	-	-	A	128477783	G	A	128477783	3	1	658	1	0	0	0	0	1	0	0	0	5981	1059	37	1	961	1	FLNC	7	128477783	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8562962	128477783	30660880	278	56461										
SMO	0	genome.wustl.edu	37	chr7	128850845	128850845	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gatgagccaaagcggatcaaGaagagcaagatgattgccaa	12	7	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	128850845	128850845	G	A	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	silent	c.1692	p.K564	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	14	0	0	24	8	25	-	-	-	A	128850845	G	A	128850845	2	1	658	1	0	0	0	0	0	0	0	1	14889	933	33	2		2	SMO	7	128850845	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	373062	128850845	30287818	279	56462										
ZC3HC1	0	genome.wustl.edu	37	chr7	129666140	129666140	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taggagaagactgatcttgtCttctgtcaagcactacaagg	10	8	4	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	129666140	129666140	C	G	SNP	ZC3HC1	ENST00000358303	human	ensembl	69_37n	-1	known	missense	c.634	p.D212H	1.000	NULL	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	34	0	0	57	17	22.67	-	-	-	G	129666140	C	G	129666140	3	3	658	1	0	0	0	0	1	0	0	0	17673	913	32	2	894	2	ZC3HC1	7	129666140	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	815295	129666140	29472523	280	56463										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138437565	138437566	+	Frame_Shift_Del	DEL	CT	CT	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcaggcgctggcggtgagaCtctgtttgtgttatgaccta							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	138437565	138437566	CT	-	DEL	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	frame_shift_del	c.834_833	p.E278fs	0.997:1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	31	0	0	28	4	12.5	-	-	-	-	138437566	CT	-	138437565	7	5	658	1	0	1	0	1	0	0	0	0	1174	564	20	0	1736	0	ATP6V0A4	7	138437565	Frame_Shift_Del	DEL	CT	TCGA-C8-A26Y-01A-11D-A16D-09	8771425	138437565	20701098	281	56464										
TAS2R38	0	genome.wustl.edu	37	chr7	141673190	141673190	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggttggcttggtttgcaatCatccatagcatgatgatggc	12	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	141673190	141673190	C	T	SNP	TAS2R38	ENST00000547270	human	ensembl	69_37n	-1	known	missense	c.300	p.M100I	0.496	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138	41	0	0	32	16	33.33	-	-	-	T	141673190	C	T	141673190	3	4	658	1	0	0	0	0	1	0	0	0	15667	826	29	2	705	2	TAS2R38	7	141673190	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3235625	141673190	17465473	282	56465										
TRPV5	0	genome.wustl.edu	37	chr7	142625939	142625939	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttttgttgggctggaggatGaggatgtgtaatactgtgtt	16	2	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	142625939	142625939	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	69_37n	-1	known	silent	c.609	p.L203	0.997	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6_channel,prints_TRPV5_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412	135	0	0	153	70	31.39	-	-	-	A	142625939	G	A	142625939	2	1	658	1	0	0	0	0	0	0	0	1	16695	1277	45	2		2	TRPV5	7	142625939	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	952749	142625939	16512724	283	56466										
TAS2R41	0	genome.wustl.edu	37	chr7	143175673	143175673	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	accagagctctgaagtccctCatctccttcctcattcttta	4	15	5	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	143175673	143175673	C	T	SNP	TAS2R41	ENST00000408916	human	ensembl	69_37n	1	known	silent	c.708	p.L236	0.234	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R41	HGNC	ENSG00000221855	43	0	0	52	23	30.67	-	-	-	T	143175673	C	T	143175673	2	4	658	1	0	0	0	0	0	0	0	1	15671	813	29	2		2	TAS2R41	7	143175673	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	549734	143175673	15962990	284	56467										
ZNF212	0	genome.wustl.edu	37	chr7	148947328	148947328	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagagaaaagctcctattttCagaccaccgagatttcactc	6	12	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	148947328	148947328	C	G	SNP	ZNF212	ENST00000335870	human	ensembl	69_37n	1	known	missense	c.103	p.Q35E	0.339	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260	37	0	0	36	15	29.41	-	-	-	G	148947328	C	G	148947328	3	3	658	1	0	0	0	0	1	0	0	0	17864	827	29	2	109	2	ZNF212	7	148947328	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5771655	148947328	10191335	285	56468										
MLL3	0	genome.wustl.edu	37	chr7	151880189	151880189	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccttttcatggaatcatttGacatctgtactttattaatg	6	7	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	7	151880189	151880189	G	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5135	p.S1712*	1.000	smart_HMG_superfamily	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	66	0	0	101	46	31.29	-	-	-	C	151880189	G	C	151880189	4	2	658	1	0	0	0	0	0	1	0	0	9693	1294	45	2	9700	2	MLL3	7	151880189	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2932861	151880189	7258474	286	56469										
MYOM2	0	genome.wustl.edu	37	chr8	2024237	2024237	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagatgctgacccgctggtCacaggggcccccggtgcacc	13	16	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	2024237	2024237	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	silent	c.1137	p.V379	0.223	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	33	0	0	16	6	27.27	-	-	-	T	2024237	C	T	2024237	2	4	658	1	0	0	0	0	0	0	0	1	10164	813	29	2		2	MYOM2	8	2024237	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		2024237	144339785	287	56470										
DLC1	0	genome.wustl.edu	37	chr8	12952717	12952717	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacactccggtccttgtagtCtggaaccttgatcctcttca	7	14	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	12952717	12952717	C	G	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.3205	p.D1069H	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	30	0	0	16	8	33.33	-	-	-	G	12952717	C	G	12952717	3	3	658	1	0	0	0	0	1	0	0	0	4586	913	32	2	1413	2	DLC1	8	12952717	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10928480	12952717	133411305	288	56471										
LZTS1	0	genome.wustl.edu	37	chr8	20107469	20107469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaagcccgaggacatctggtCatggccttgccgctcctccc	11	16	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	20107469	20107469	C	G	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	missense	c.1555	p.D519H	0.997	pfam_Fez1	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	38	0	0	38	13	25.49	-	-	-	G	20107469	C	G	20107469	3	3	658	1	0	0	0	0	1	0	0	0	9205	826	29	2	239	2	LZTS1	8	20107469	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7154752	20107469	126256553	289	56472										
DPYSL2	0	genome.wustl.edu	37	chr8	26441384	26441384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcccactcccggatggtgatCcccggaggaattgacgtcca	12	14	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	26441384	26441384	C	G	SNP	DPYSL2	ENST00000311151	human	ensembl	69_37n	1	known	missense	c.198	p.I66M	0.891	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964	37	0	0	39	7	14.89	-	-	-	G	26441384	C	G	26441384	3	3	658	1	0	0	0	0	1	0	0	0	4782	845	30	2	208	2	DPYSL2	8	26441384	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6333915	26441384	119922638	290	56473										
ZNF395	0	genome.wustl.edu	37	chr8	28207585	28207585	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcccgcacactcaccggaGagagagagcaggcggcggag	16	13	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	28207585	28207585	G	C	SNP	ZNF395	ENST00000344423	human	ensembl	69_37n	-1	known	missense	c.1322	p.S441C	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	25	0	0	33	6	15.38	-	-	-	C	28207585	G	C	28207585	3	2	658	1	0	0	0	0	1	0	0	0	17977	942	33	2	231	2	ZNF395	8	28207585	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1766201	28207585	118156437	291	56474										
KCNU1	0	genome.wustl.edu	37	chr8	36780092	36780092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaatctgcatctcagcactgCcttttctacgggcactgttt	7	12	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	36780092	36780092	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.2681	p.A894V	0.993	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	75	0	0	124	18	12.68	-	-	-	T	36780092	C	T	36780092	3	4	658	1	0	0	0	0	1	0	0	0	8147	739	26	4	2775	4	KCNU1	8	36780092	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8572507	36780092	109583930	292	56475										
HOOK3	0	genome.wustl.edu	37	chr8	42823256	42823256	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcggcaggttaaactcttaGaagagaagaataccatgtat	11	6	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	42823256	42823256	G	C	SNP	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	missense	c.1021	p.E341Q	1.000	pfam_HOOK	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	32	0	0	42	19	31.15	-	-	-	C	42823256	G	C	42823256	3	2	658	1	0	0	0	0	1	0	0	0	7335	943	33	2	1063	2	HOOK3	8	42823256	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6043164	42823256	103540766	293	56476										
POTEA	0	genome.wustl.edu	37	chr8	43152473	43152473	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtgcgttaatgttgctacaAcatggcactgatccaaatct	8	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	43152473	43152473	A	G	SNP	POTEA	ENST00000522175	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	86	0	0	86	18	17.31	-	-	-	G	43152473	A	G	43152473	1	3	658	0	1	0	0	0	0	0	0	0	12335	40	2	5		5	POTEA	8	43152473	RNA	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	329217	43152473	103211549	294	56477										
PXDNL	0	genome.wustl.edu	37	chr8	52252213	52252213	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagtgctgtgatggtttcctGaatttccgctgcaaacgtgc	12	9	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	52252213	52252213	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	nonsense	c.4117	p.Q1373*	0.838	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	66	0	0	92	44	32.35	-	-	-	A	52252213	G	A	52252213	4	1	658	1	0	0	0	0	0	1	0	0	12931	1299	45	2	286	2	PXDNL	8	52252213	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9099740	52252213	94111809	295	56478										
TMEM68	0	genome.wustl.edu	37	chr8	56668876	56668876	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtataaatattttagccatGaaatagtaaaaatctatagg	6	3	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	56668876	56668876	G	T	SNP	TMEM68	ENST00000520061	human	ensembl	69_37n	-1	known	nonsense	c.236	p.S79*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM68	HGNC	ENSG00000167904	26	0	0	55	10	15.38	-	-	-	T	56668876	G	T	56668876	4	4	658	1	0	0	0	0	0	1	0	0	16292	1281	45	2	365	2	TMEM68	8	56668876	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4416663	56668876	89695146	296	56479										
TRIM55	0	genome.wustl.edu	37	chr8	67062075	67062075	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agttggttgagtcaggaattCagtttatggatgagccagaa	13	4	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	67062075	67062075	C	T	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	nonsense	c.799	p.Q267*	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	64	0	0	87	21	19.44	-	-	-	T	67062075	C	T	67062075	4	4	658	1	0	0	0	0	0	1	0	0	16625	827	29	2	817	2	TRIM55	8	67062075	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10393199	67062075	79301947	297	56480										
CSPP1	0	genome.wustl.edu	37	chr8	68028194	68028194	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggcaccaagacactttgaaGagatgataccacctgaaaga	9	9	0	6			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	68028194	68028194	G	C	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.1318	p.E440Q	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	60	0	0	54	45	45.45	-	-	-	C	68028194	G	C	68028194	3	2	658	1	0	0	0	0	1	0	0	0	3994	943	33	2	1473	2	CSPP1	8	68028194	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	966119	68028194	78335828	298	56481										
LRRCC1	0	genome.wustl.edu	37	chr8	86027725	86027725	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttatgtctgtgtgtcaatCttctgagccagagaaaaata	8	6	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	86027725	86027725	C	T	SNP	LRRCC1	ENST00000360375	human	ensembl	69_37n	1	known	missense	c.836	p.S279F	0.998	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	40	0	0	54	11	16.92	-	-	-	T	86027725	C	T	86027725	3	4	658	1	0	0	0	0	1	0	0	0	9092	913	32	2	858	2	LRRCC1	8	86027725	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	17999531	86027725	60336297	299	56482										
RIPK2	0	genome.wustl.edu	37	chr8	90802357	90802357	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggatccagagcaaaagggaaGacattgtgaaccaaatgaca	11	7	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	90802357	90802357	G	C	SNP	RIPK2	ENST00000220751	human	ensembl	69_37n	1	known	missense	c.1336	p.D446H	1.000	pfam_CARD,superfamily_DEATH-like,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_CARD	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_CARD,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312	31	0	0	33	6	15.38	-	-	-	C	90802357	G	C	90802357	3	2	658	1	0	0	0	0	1	0	0	0	13467	942	33	2	1378	2	RIPK2	8	90802357	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4774632	90802357	55561665	300	56483										
ESRP1	0	genome.wustl.edu	37	chr8	95654199	95654199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cggaggtgggacagttgcacGaagtgctagttagaccggat	16	7	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	95654199	95654199	G	A	SNP	ESRP1	ENST00000433389	human	ensembl	69_37n	1	known	missense	c.148	p.E50K	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413	23	0	0	9	9	50	-	-	-	A	95654199	G	A	95654199	3	1	658	1	0	0	0	0	1	0	0	0	5295	1059	37	1	154	1	ESRP1	8	95654199	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4851842	95654199	50709823	301	56484										
INTS8	0	genome.wustl.edu	37	chr8	95886801	95886803	+	In_Frame_Del	DEL	TGT	TGT	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taataaaacgaatgataaaaTgttgttctttgctgaattgc							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	95886801	95886803	TGT	-	DEL	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	in_frame_del	c.2659_2661	p.C888in_frame_del	1.000:1.000:0.998	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	81	0	0	102	19	15.57	-	-	-	-	95886803	TGT	-	95886801	7	5	658	1	0	1	0	1	0	0	0	0	7838	1464	51	0	2749	0	INTS8	8	95886801	In_Frame_Del	DEL	TGT	TCGA-C8-A26Y-01A-11D-A16D-09	232602	95886801	50477221	302	56485										
UQCRB	0	genome.wustl.edu	37	chr8	97244114	97244114	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaaggttctcaggaagtcttCttatggcttcttttacatct	7	8	5	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	97244114	97244114	C	T	SNP	UQCRB	ENST00000521036	human	ensembl	69_37n	-1	known	missense	c.146	p.R49K	1.000	pfam_Cyt-d_ubiquinol_oxidase_14kDa,superfamily_Cyt-d_ubiquinol_oxidase_14kDa	pfam_Cyt-d_ubiquinol_oxidase_14kDa,superfamily_Cyt-d_ubiquinol_oxidase_14kDa	-	no_errors	UQCRB	HGNC	ENSG00000156467	64	0	0	47	40	45.98	-	-	-	T	97244114	C	T	97244114	3	4	658	1	0	0	0	0	1	0	0	0	17115	913	32	2	197	2	UQCRB	8	97244114	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1357313	97244114	49119908	303	56486										
VPS13B	0	genome.wustl.edu	37	chr8	100791109	100791109	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcactatgcaaagtgtggtGaaacccttcagcatcttcgg	10	10	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	100791109	100791109	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	silent	c.7704	p.V2568	0.498	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	32	0	0	40	14	25.93	-	-	-	A	100791109	G	A	100791109	2	1	658	1	0	0	0	0	0	0	0	1	17287	1277	45	2		2	VPS13B	8	100791109	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3546995	100791109	45572913	304	56487										
UBR5	0	genome.wustl.edu	37	chr8	103307462	103307462	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctcctgcgacccaaacataAtcatagatttcaaggcattc	5	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	103307462	103307462	A	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.4028	p.I1343N	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	52	0	0	73	18	19.78	-	-	-	T	103307462	A	T	103307462	3	4	658	1	0	0	0	0	1	0	0	0	17002	101	4	5	4487	5	UBR5	8	103307462	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2516353	103307462	43056560	305	56488										
CSMD3	0	genome.wustl.edu	37	chr8	113326143	113326143	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agttttacatacctatatatCttatccggaagccttttttg	5	8	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	113326143	113326143	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.7688	p.R2563K	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	59	0	0	75	36	32.43	-	-	-	T	113326143	C	T	113326143	3	4	658	1	0	0	0	0	1	0	0	0	3978	913	32	2	3527	2	CSMD3	8	113326143	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10018681	113326143	33037879	306	56489										
WDR67	0	genome.wustl.edu	37	chr8	124164049	124164049	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taaatttcgttttcaagtttCtttaaatagaagagcagtag	7	4	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	124164049	124164049	C	G	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.3071	p.S1024C	0.973	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	43	0	0	29	19	39.58	-	-	-	G	124164049	C	G	124164049	3	3	658	1	0	0	0	0	1	0	0	0	17415	913	32	2	3157	2	WDR67	8	124164049	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10837906	124164049	22199973	307	56490										
ATAD2	0	genome.wustl.edu	37	chr8	124383508	124383508	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attaaacactcccaagtcttCaagttctctcattcgctgtc	4	13	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	124383508	124383508	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.607	p.E203K	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	77	0	0	104	25	19.38	-	-	-	T	124383508	C	T	124383508	3	4	658	1	0	0	0	0	1	0	0	0	1075	835	29	2	3661	2	ATAD2	8	124383508	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	219459	124383508	21980514	308	56491										
FER1L6	0	genome.wustl.edu	37	chr8	125076647	125076647	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccacagctcctcccaggatCccccagcagatcacatttat	5	18	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	125076647	125076647	C	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.3388	p.P1130T	0.004	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	38	0	0	38	8	17.39	-	-	-	A	125076647	C	A	125076647	3	1	658	1	0	0	0	0	1	0	0	0	5861	855	30	2	3486	2	FER1L6	8	125076647	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	693139	125076647	21287375	309	56492										
TMEM65	0	genome.wustl.edu	37	chr8	125326227	125326227	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttcgtttccagtttttcatCttcttcacctcctccaaaga	3	13	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	125326227	125326227	C	G	SNP	TMEM65	ENST00000297632	human	ensembl	69_37n	-1	known	missense	c.697	p.D233H	1.000	NULL	pfam_Transmembrane_protein_65	-	no_errors	TMEM65	HGNC	ENSG00000164983	69	0	0	55	41	41.84	-	-	-	G	125326227	C	G	125326227	3	3	658	1	0	0	0	0	1	0	0	0	16289	913	32	2	29	2	TMEM65	8	125326227	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	249580	125326227	21037795	310	56493										
FAM49B	0	genome.wustl.edu	37	chr8	130861491	130861491	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tataaaacaataacttacatCaattttggaagttttagcaa	4	5	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	130861491	130861491	C	T	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.838	p.D280N	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	33	0	0	34	15	30.61	-	-	-	T	130861491	C	T	130861491	3	4	658	1	0	0	0	0	1	0	0	0	5622	826	29	2	148	2	FAM49B	8	130861491	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5535264	130861491	15502531	311	56494										
KCNQ3	0	genome.wustl.edu	37	chr8	133492505	133492505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttgactgggcggctcagcGgggtcttggccaggagcccg	17	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	133492505	133492505	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.275	p.P92L	0.999	prints_K_chnl_volt-dep_KCNQ3	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	38	0	0	23	8	25.81	-	-	-	A	133492505	G	A	133492505	3	1	658	1	0	0	0	0	1	0	0	0	8138	1116	39	1	2403	1	KCNQ3	8	133492505	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2631014	133492505	12871517	312	56495										
LY6H	0	genome.wustl.edu	37	chr8	144239845	144239845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gatagtctgagaaaaagtgtCgcttaacgaagtcacaggag	12	6	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	144239845	144239845	C	T	SNP	LY6H	ENST00000342752	human	ensembl	69_37n	-1	known	missense	c.308	p.R103Q	0.990	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6H	HGNC	ENSG00000176956	44	0	0	46	11	19.3	-	-	-	T	144239845	C	T	144239845	3	4	658	1	0	0	0	0	1	0	0	0	9164	884	31	1	181	1	LY6H	8	144239845	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10747340	144239845	2124177	313	56496										
PLEC	0	genome.wustl.edu	37	chr8	145006649	145006649	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctcctcctccttctcattCagccacattagctccttagt	3	17	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	145006649	145006649	C	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.2307	p.L769	0.628	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	32	0	0	19	14	42.42	-	-	-	A	145006649	C	A	145006649	2	1	658	1	0	0	0	0	0	0	0	1	12126	813	29	2		2	PLEC	8	145006649	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	766804	145006649	1357373	314	56497										
MFSD3	0	genome.wustl.edu	37	chr8	145736542	145736542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acctagcacccagcacctttCtctgagctgagtggctggag	11	13	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	145736542	145736542	C	G	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	1	known	missense	c.1234	p.L412V	0.064	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	55	0	0	33	29	46.77	-	-	-	G	145736542	C	G	145736542	3	3	658	1	0	0	0	0	1	0	0	0	9603	913	32	2	1252	2	MFSD3	8	145736542	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	729893	145736542	627480	315	56498										
RECQL4	0	genome.wustl.edu	37	chr8	145737119	145737119	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagaacttctcctctggcctCagggacaggaactggcggat	13	11	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	8	145737119	145737119	C	A	SNP	RECQL4	ENST00000301323	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.407	-	-	-	no_errors	RECQL4	HGNC	ENSG00000160957	13	0	0	12	4	25	-	-	-	A	145737119	C	A	145737119	1	1	658	0	1	0	0	0	0	0	0	0	13285	813	29	2		2	RECQL4	8	145737119	RNA	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	577	145737119	626903	316	56499										
SMARCA2	0	genome.wustl.edu	37	chr9	2088583	2088583	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttttactaaggagactgaaGaaagaagttgaatcccagct	9	6	0	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	2088583	2088583	G	C	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.2853	p.K951N	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	34	0	0	25	21	45.65	-	-	-	C	2088583	G	C	2088583	3	2	658	1	0	0	0	0	1	0	0	0	14858	933	33	2	2923	2	SMARCA2	9	2088583	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		2088583	139124848	317	56500										
JAK2	0	genome.wustl.edu	37	chr9	5044465	5044465	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctatcggcatggaatatctcGaggtgctgaagctcctcttc	10	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	5044465	5044465	G	C	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	missense	c.413	p.R138P	1.000	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	73	0	0	40	38	48.72	-	-	-	C	5044465	G	C	5044465	3	2	658	1	0	0	0	0	1	0	0	0	7992	1058	37	3	423	3	JAK2	9	5044465	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2955882	5044465	136168966	318	56501										
FREM1	0	genome.wustl.edu	37	chr9	14868860	14868860	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	catctcctgacaggaaggcaGagtggcccttcatcaccctc	9	15	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	14868860	14868860	G	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.116	p.S39C	0.992	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	22	0	0	19	13	40.62	-	-	-	C	14868860	G	C	14868860	3	2	658	1	0	0	0	0	1	0	0	0	6093	942	33	2	6617	2	FREM1	9	14868860	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9824395	14868860	126344571	319	56502										
IFNA13	0	genome.wustl.edu	37	chr9	21367943	21367943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctcagggagatcacagcccaGagagcagcttgacttgcagc	12	12	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	21367943	21367943	G	C	SNP	IFNA13	ENST00000449498	human	ensembl	69_37n	-1	known	missense	c.67	p.L23V	0.035	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816	38	0	0	26	23	46	-	-	-	C	21367943	G	C	21367943	3	2	658	1	0	0	0	0	1	0	0	0	7587	933	33	2	509	2	IFNA13	9	21367943	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6499083	21367943	119845488	320	56503										
PIGO	0	genome.wustl.edu	37	chr9	35095226	35095226	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgggcatggtggggctgaaTctccaggatcctctgcaagg	15	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	35095226	35095226	T	C	SNP	PIGO	ENST00000341666	human	ensembl	69_37n	-1	known	missense	c.337	p.I113V	0.009	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282	39	0	0	25	9	25.71	-	-	-	C	35095226	T	C	35095226	3	2	658	1	0	0	0	0	1	0	0	0	11968	1435	50	5	2972	5	PIGO	9	35095226	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	13727283	35095226	106118205	321	56504										
FAM189A2	0	genome.wustl.edu	37	chr9	71990715	71990715	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcaaccagccaagtgcacaGacaaagaaaatgccttgaaa	7	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	71990715	71990715	G	C	SNP	FAM189A2	ENST00000257515	human	ensembl	69_37n	1	known	missense	c.187	p.D63H	1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189A2	HGNC	ENSG00000135063	67	0	0	70	11	13.58	-	-	-	C	71990715	G	C	71990715	3	2	658	1	0	0	0	0	1	0	0	0	5558	942	33	2	197	2	FAM189A2	9	71990715	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	36895489	71990715	69222716	322	56505										
SMC5	0	genome.wustl.edu	37	chr9	72912969	72912969	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtaatacccgcaaaatgataGaggatttgcaaaatgaacta	8	6	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	72912969	72912969	G	A	SNP	SMC5	ENST00000361138	human	ensembl	69_37n	1	known	missense	c.1141	p.E381K	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC	-	no_errors	SMC5	HGNC	ENSG00000198887	45	0	0	49	11	18.33	-	-	-	A	72912969	G	A	72912969	3	1	658	1	0	0	0	0	1	0	0	0	14875	943	33	2	1175	2	SMC5	9	72912969	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	922254	72912969	68300462	323	56506										
PRUNE2	0	genome.wustl.edu	37	chr9	79267494	79267494	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gactgtccaagttatcatcaGagagaatagatccttcactt	7	9	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	79267494	79267494	G	C	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.7385	p.S2462C	1.000	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	62	0	0	85	33	27.97	-	-	-	C	79267494	G	C	79267494	3	2	658	1	0	0	0	0	1	0	0	0	12721	942	33	2	840	2	PRUNE2	9	79267494	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6354525	79267494	61945937	324	56507										
PRUNE2	0	genome.wustl.edu	37	chr9	79324579	79324579	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaagatgtgatccctggagtCattgtttttcttgccccaga	9	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	79324579	79324579	C	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1534	p.D512Y	0.663	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	57	0	0	85	36	29.75	-	-	-	A	79324579	C	A	79324579	3	1	658	1	0	0	0	0	1	0	0	0	12721	826	29	2	6703	2	PRUNE2	9	79324579	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	57085	79324579	61888852	325	56508										
KIF27	0	genome.wustl.edu	37	chr9	86457233	86457233	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgatcccggctggttttctTatagaaataaagatcttttt	7	6	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	86457233	86457233	T	G	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.3640	p.K1214Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	50	0	0	66	22	25	-	-	-	G	86457233	T	G	86457233	3	3	658	1	0	0	0	0	1	0	0	0	8348	1763	61	5	573	5	KIF27	9	86457233	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	7132654	86457233	54756198	326	56509										
KIF27	0	genome.wustl.edu	37	chr9	86485437	86485437	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaatagaattgacaaacctgGagatggtctatacttccaaa	7	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	86485437	86485437	G	C	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	silent	c.2754	p.L918	0.995	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	104	0	0	143	41	22.16	-	-	-	C	86485437	G	C	86485437	2	2	658	1	0	0	0	0	0	0	0	1	8348	1161	41	2		2	KIF27	9	86485437	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	28204	86485437	54727994	327	56510										
IARS	0	genome.wustl.edu	37	chr9	95009730	95009730	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcatcactgccttaaaggctCccttcagacgcttccccagg	7	16	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	95009730	95009730	C	G	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.2720	p.G907A	1.000	superfamily_tRNAsynth_1a_anticodon-bd	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	42	0	0	75	20	20.83	-	-	-	G	95009730	C	G	95009730	3	3	658	1	0	0	0	0	1	0	0	0	7527	855	30	2	1104	2	IARS	9	95009730	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8524293	95009730	46203701	328	56511										
ZNF484	0	genome.wustl.edu	37	chr9	95610506	95610506	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttctattatataaggttatgAtaggctccaaattctttcca	5	7	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	95610506	95610506	A	G	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.569	p.I190T	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	52	0	0	98	32	24.62	-	-	-	G	95610506	A	G	95610506	3	3	658	1	0	0	0	0	1	0	0	0	18033	333	12	5	1999	5	ZNF484	9	95610506	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	600776	95610506	45602925	329	56512										
GABBR2	0	genome.wustl.edu	37	chr9	101065570	101065570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttttctgactgtaggccctCcaggcgggatgtgctggctt	14	10	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	101065570	101065570	C	G	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	missense	c.2365	p.E789Q	1.000	prints_GPCR_3_GABA_rcpt_B2	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	90	0	0	104	38	26.76	-	-	-	G	101065570	C	G	101065570	3	3	658	1	0	0	0	0	1	0	0	0	6205	864	30	2	476	2	GABBR2	9	101065570	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5455064	101065570	40147861	330	56513										
ZNF189	0	genome.wustl.edu	37	chr9	104170663	104170663	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acactggggaaaggccctatGagtgtaattactgtggaaaa	12	6	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	104170663	104170663	G	A	SNP	ZNF189	ENST00000339664	human	ensembl	69_37n	1	known	missense	c.613	p.E205K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF189	HGNC	ENSG00000136870	37	0	0	44	18	29.03	-	-	-	A	104170663	G	A	104170663	3	1	658	1	0	0	0	0	1	0	0	0	17850	1291	45	2	623	2	ZNF189	9	104170663	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3105093	104170663	37042768	331	56514										
ALDOB	0	genome.wustl.edu	37	chr9	104187272	104187272	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggcaaaggttgatagcattGaggttgagagtggcatcctc	15	6	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	104187272	104187272	G	A	SNP	ALDOB	ENST00000374855	human	ensembl	69_37n	-1	known	silent	c.852	p.L284	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOB	HGNC	ENSG00000136872	33	0	0	47	14	22.95	-	-	-	A	104187272	G	A	104187272	2	1	658	1	0	0	0	0	0	0	0	1	508	1277	45	2		2	ALDOB	9	104187272	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	16609	104187272	37026159	332	56515										
OR13C3	0	genome.wustl.edu	37	chr9	107298627	107298627	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggtatctcagtgggttgcaGatggccacataacgatcaaa	12	8	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	107298627	107298627	G	T	SNP	OR13C3	ENST00000374781	human	ensembl	69_37n	-1	known	silent	c.468	p.I156	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C3	HGNC	ENSG00000204246	42	0	0	72	29	28.71	-	-	-	T	107298627	G	T	107298627	2	4	658	1	0	0	0	0	0	0	0	1	11008	932	33	2		2	OR13C3	9	107298627	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3111355	107298627	33914804	333	56516										
MUSK	0	genome.wustl.edu	37	chr9	113457776	113457776	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatgggtaatcccaaaccatCagtgtcttggataaagggag	11	7	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	113457776	113457776	C	G	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	nonsense	c.452	p.S151*	0.961	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	36	0	0	41	19	31.67	-	-	-	G	113457776	C	G	113457776	4	3	658	1	0	0	0	0	0	1	0	0	10061	838	29	2	466	2	MUSK	9	113457776	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6159149	113457776	27755655	334	56517										
DBC1	0	genome.wustl.edu	37	chr9	121930379	121930379	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcacgcaggggatggggcgCtggcacagcgtggtgctgcc	18	11	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	121930379	121930379	C	T	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1269	p.Q423	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	25	0	0	20	13	38.24	-	-	-	T	121930379	C	T	121930379	2	4	658	1	0	0	0	0	0	0	0	1	4279	796	28	4		4	DBC1	9	121930379	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8472603	121930379	19283052	335	56518										
OR5C1	0	genome.wustl.edu	37	chr9	125551554	125551554	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgcaggtctggctgatactGagtgttgcttgctggcagcc	14	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	125551554	125551554	G	T	SNP	OR5C1	ENST00000373680	human	ensembl	69_37n	1	known	nonsense	c.343	p.E115*	0.987	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215	51	0	0	49	9	15.25	-	-	-	T	125551554	G	T	125551554	4	4	658	1	0	0	0	0	0	1	0	0	11226	1291	45	2	345	2	OR5C1	9	125551554	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3621175	125551554	15661877	336	56519										
COQ4	0	genome.wustl.edu	37	chr9	131095838	131095838	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgtcctcaacctgtactatGagcggcgctgggagcagtcc	13	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	131095838	131095838	G	A	SNP	COQ4	ENST00000300452	human	ensembl	69_37n	1	known	missense	c.712	p.E238K	1.000	pfam_CoenzQ_biosynthesis_Coq4	pfam_CoenzQ_biosynthesis_Coq4	-	no_errors	COQ4	HGNC	ENSG00000167113	19	0	0	9	6	40	-	-	-	A	131095838	G	A	131095838	3	1	658	1	0	0	0	0	1	0	0	0	3777	1291	45	2	738	2	COQ4	9	131095838	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5544284	131095838	10117593	337	56520										
TBC1D13	0	genome.wustl.edu	37	chr9	131566358	131566358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caagatggagaaggtttactCcaccttgaaagataaggatg	11	6	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	131566358	131566358	C	T	SNP	TBC1D13	ENST00000372648	human	ensembl	69_37n	1	known	missense	c.878	p.S293F	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021	29	0	0	30	9	23.08	-	-	-	T	131566358	C	T	131566358	3	4	658	1	0	0	0	0	1	0	0	0	15694	855	30	2	912	2	TBC1D13	9	131566358	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	470520	131566358	9647073	338	56521										
TOR1B	0	genome.wustl.edu	37	chr9	132566431	132566431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcaaggcgctgactggcttCaggaacaacaaaaatcccaa	8	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	132566431	132566431	C	T	SNP	TOR1B	ENST00000427860	human	ensembl	69_37n	1	known	missense	c.224	p.S75L	1.000	pfam_Torsin	pfam_Torsin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TOR1B	HGNC	ENSG00000136816	36	0	0	40	23	36.51	-	-	-	T	132566431	C	T	132566431	3	4	658	1	0	0	0	0	1	0	0	0	16470	825	29	2	285	2	TOR1B	9	132566431	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1000073	132566431	8647000	339	56522										
RAPGEF1	0	genome.wustl.edu	37	chr9	134463211	134463211	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttgcccaaagcaaaacctCaggaatctacaaaaggaaag	7	9	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	134463211	134463211	C	T	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	missense	c.2641	p.E881K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	63	0	0	52	29	35.8	-	-	-	T	134463211	C	T	134463211	3	4	658	1	0	0	0	0	1	0	0	0	13126	835	29	2	670	2	RAPGEF1	9	134463211	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1896780	134463211	6750220	340	56523										
C9orf96	0	genome.wustl.edu	37	chr9	136262418	136262418	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaggcaacgtggccagcattTtaggtgatgctggggacaca	14	8	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	136262418	136262418	T	A	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	missense	c.994	p.L332I	0.579	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	23	0	0	14	13	48.15	-	-	-	A	136262418	T	A	136262418	3	1	658	1	0	0	0	0	1	0	0	0	2533	1838	64	5	1032	5	C9orf96	9	136262418	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1799207	136262418	4951013	341	56524										
GRIN1	0	genome.wustl.edu	37	chr9	140056490	140056490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acgagcgcgcgcagtacatcGagttttccaagcccttcaag	10	13	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	140056490	140056490	G	A	SNP	GRIN1	ENST00000371561	human	ensembl	69_37n	1	known	missense	c.1582	p.E528K	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884	22	0	0	18	7	28	-	-	-	A	140056490	G	A	140056490	3	1	658	1	0	0	0	0	1	0	0	0	6829	1059	37	1	1691	1	GRIN1	9	140056490	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3794072	140056490	1156941	342	56525										
SSNA1	0	genome.wustl.edu	37	chr9	140083571	140083571	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtgccggcagatccaggagGaggaggacgagaagcagcgg	19	8	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	9	140083571	140083571	G	C	SNP	SSNA1	ENST00000322310	human	ensembl	69_37n	1	known	missense	c.106	p.E36Q	1.000	NULL	NULL	-	no_errors	SSNA1	HGNC	ENSG00000176101	10	0	0	6	6	50	-	-	-	C	140083571	G	C	140083571	3	2	658	1	0	0	0	0	1	0	0	0	15278	1175	41	2	112	2	SSNA1	9	140083571	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	27081	140083571	1129860	343	56526										
RBM17	0	genome.wustl.edu	37	chr10	6146916	6146916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctgttcccagtgggttttCtgcaggggaagttctgattc	12	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	6146916	6146916	C	G	SNP	RBM17	ENST00000379888	human	ensembl	69_37n	1	known	missense	c.263	p.S88C	1.000	pirsf_Splicing_factor_SPF45	pfam_G_patch_dom,smart_G_patch_dom,smart_RRM_dom_euk,pirsf_Splicing_factor_SPF45,pfscan_G_patch_dom	-	no_errors	RBM17	HGNC	ENSG00000134453	69	0	0	56	68	54.84	-	-	-	G	6146916	C	G	6146916	3	3	658	1	0	0	0	0	1	0	0	0	13202	913	32	2	273	2	RBM17	10	6146916	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		6146916	129387831	344	56527										
NSUN6	0	genome.wustl.edu	37	chr10	18903468	18903468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagaaatacttttgttccatCaaattctttggctcctttct	4	9	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	18903468	18903468	C	G	SNP	NSUN6	ENST00000377304	human	ensembl	69_37n	-1	known	missense	c.496	p.D166H	0.997	pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,prints_RCMT,pfscan_PUA	-	no_errors	NSUN6	HGNC	ENSG00000241058	38	0	0	33	36	51.43	-	-	-	G	18903468	C	G	18903468	3	3	658	1	0	0	0	0	1	0	0	0	10755	826	29	2	941	2	NSUN6	10	18903468	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	12756552	18903468	116631279	345	56528										
C10orf68	0	genome.wustl.edu	37	chr10	32974906	32974906	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttctttatgtagctcataatGaagtaccaaatgaaaggctt	7	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	32974906	32974906	G	A	SNP	C10orf68	ENST00000375025	human	ensembl	69_37n	1	known	missense	c.52	p.E18K	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	29	0	0	22	30	57.69	-	-	-	A	32974906	G	A	32974906	3	1	658	1	0	0	0	0	1	0	0	0	1623	1291	45	2	58	2	C10orf68	10	32974906	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	14071438	32974906	102559841	346	56529										
OGDHL	0	genome.wustl.edu	37	chr10	50966591	50966591	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcatgtgcagccaggagcctCgcagcctgtaccccaagacg	11	15	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	50966591	50966591	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	silent	c.48	p.A16	0.000	NULL	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	10	0	0	4	6	60	-	-	-	T	50966591	C	T	50966591	2	4	658	1	0	0	0	0	0	0	0	1	10913	871	31	1		1	OGDHL	10	50966591	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	17991685	50966591	84568156	347	56530										
DKK1	0	genome.wustl.edu	37	chr10	54074293	54074293	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgggagtgagcgccaccttGaactcggttctcaattccaa	10	12	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	54074293	54074293	G	A	SNP	DKK1	ENST00000373970	human	ensembl	69_37n	1	known	silent	c.99	p.L33	0.995	NULL	pfam_Dickkopf_N	-	no_errors	DKK1	HGNC	ENSG00000107984	13	0	0	9	7	43.75	-	-	-	A	54074293	G	A	54074293	2	1	658	1	0	0	0	0	0	0	0	1	4580	1281	45	2		2	DKK1	10	54074293	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3107702	54074293	81460454	348	56531										
MINPP1	0	genome.wustl.edu	37	chr10	89312227	89312227	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggctaacagtacatctgatGaactatgagtaactgaagaa	10	6	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	89312227	89312227	G	A	SNP	MINPP1	ENST00000371996	human	ensembl	69_37n	1	known	missense	c.1456	p.E486K	1.000	NULL	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789	12	0	0	10	16	61.54	-	-	-	A	89312227	G	A	89312227	3	1	658	1	0	0	0	0	1	0	0	0	9659	1291	45	2	1512	2	MINPP1	10	89312227	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	35237934	89312227	46222520	349	56532										
PTEN	0	genome.wustl.edu	37	chr10	89720709	89720709	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	accaggaccagaggaaacctCagaaaaagtagaaaatggaa	10	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	89720709	89720709	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.860	p.S287*	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	42	0	0	20	31	60.78	-	-	-	G	89720709	C	G	89720709	4	3	658	1	0	0	0	0	0	1	0	0	12818	838	29	2	890	2	PTEN	10	89720709	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	408482	89720709	45814038	350	56533										
MYOF	0	genome.wustl.edu	37	chr10	95079720	95079720	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcccttcaccatccaaagatCtgtaatggacatctgttttc	5	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	95079720	95079720	C	G	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.5507	p.R1836T	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	70	0	0	45	53	54.08	-	-	-	G	95079720	C	G	95079720	3	3	658	1	0	0	0	0	1	0	0	0	10161	913	32	2	702	2	MYOF	10	95079720	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5359011	95079720	40455027	351	56534										
PDE6C	0	genome.wustl.edu	37	chr10	95372794	95372794	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgttcctgtgccggtcccgGaacggcatacctgaggtggc	14	12	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	95372794	95372794	G	C	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	silent	c.312	p.R104	0.919	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	12	0	0	14	11	44	-	-	-	C	95372794	G	C	95372794	2	2	658	1	0	0	0	0	0	0	0	1	11720	1161	41	2		2	PDE6C	10	95372794	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	293074	95372794	40161953	352	56535										
C10orf129	0	genome.wustl.edu	37	chr10	96974700	96974700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggaaacgcatcactaagttgGacatctatgaaggctatggg	12	7	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	96974700	96974700	G	T	SNP	C10orf129	ENST00000341686	human	ensembl	69_37n	1	known	missense	c.1087	p.D363Y	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	C10orf129	HGNC	ENSG00000173124	42	0	0	35	32	47.76	-	-	-	T	96974700	G	T	96974700	3	4	658	1	0	0	0	0	1	0	0	0	1603	1174	41	2	1113	2	C10orf129	10	96974700	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1601906	96974700	38560047	353	56536										
TCF7L2	0	genome.wustl.edu	37	chr10	114918464	114918464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taaatccttgcctttcacttCctccgattacaggtgctaat	5	12	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	114918464	114918464	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	69_37n	1	known	missense	c.1357	p.P453S	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	78	0	0	79	60	42.86	-	-	-	T	114918464	C	T	114918464	3	4	658	1	0	0	0	0	1	0	0	0	15793	855	30	2	1552	2	TCF7L2	10	114918464	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	17943764	114918464	20616283	354	56537										
ACADSB	0	genome.wustl.edu	37	chr10	124800072	124800072	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagaggaattagccaaagttGatgcatctgtggctgtcttt	11	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	124800072	124800072	G	T	SNP	ACADSB	ENST00000358776	human	ensembl	69_37n	1	known	missense	c.394	p.D132Y	1.000	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177	47	0	0	31	17	35.42	-	-	-	T	124800072	G	T	124800072	3	4	658	1	0	0	0	0	1	0	0	0	115	1290	45	2	408	2	ACADSB	10	124800072	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9881608	124800072	10734675	355	56538										
MMP21	0	genome.wustl.edu	37	chr10	127461192	127461192	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccactgaccttgagaaggctGatgcccgtgtcactggtggg	14	11	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	10	127461192	127461192	G	C	SNP	MMP21	ENST00000368808	human	ensembl	69_37n	-1	known	missense	c.825	p.I275M	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP21	HGNC	ENSG00000154485	35	0	0	22	25	53.19	-	-	-	C	127461192	G	C	127461192	3	2	658	1	0	0	0	0	1	0	0	0	9731	1280	45	2	904	2	MMP21	10	127461192	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2661120	127461192	8073555	356	56539										
NLRP6	0	genome.wustl.edu	37	chr11	284398	284398	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagtgcagggtgcagacggtCaggtgaggcctggcctggga	19	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	284398	284398	C	T	SNP	NLRP6	ENST00000312165	human	ensembl	69_37n	1	known	silent	c.2370	p.V790	0.937	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885	11	0	0	6	5	45.45	-	-	-	T	284398	C	T	284398	2	4	658	1	0	0	0	0	0	0	0	1	10553	813	29	2		2	NLRP6	11	284398	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		284398	134722118	357	56540										
TRPM5	0	genome.wustl.edu	37	chr11	2432929	2432929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggcaaagatatggatcagcCgcagcgtgaacaccatgaag	12	9	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	2432929	2432929	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2549	p.R850Q	0.983	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	23	0	0	22	8	26.67	-	-	-	T	2432929	C	T	2432929	3	4	658	1	0	0	0	0	1	0	0	0	16685	652	23	1	986	1	TRPM5	11	2432929	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2148531	2432929	132573587	358	56541										
PPFIBP2	0	genome.wustl.edu	37	chr11	7647043	7647043	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcaagaacaggtggccctGaaagatgcagaaattgagcg	13	8	0	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	7647043	7647043	G	T	SNP	PPFIBP2	ENST00000299492	human	ensembl	69_37n	1	known	silent	c.747	p.L249	1.000	pfam_Integrase_Tn916-type_DNA-bd_N	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	33	0	0	16	16	50	-	-	-	T	7647043	G	T	7647043	2	4	658	1	0	0	0	0	0	0	0	1	12387	1277	45	2		2	PPFIBP2	11	7647043	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5214114	7647043	127359473	359	56542										
KCNJ11	0	genome.wustl.edu	37	chr11	17409584	17409584	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctgggcttggcagggtcctCtgccaggcgtgtcagcacgt	15	13	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	17409584	17409584	C	G	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	missense	c.55	p.E19Q	1.000	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	19	0	0	8	14	63.64	-	-	-	G	17409584	C	G	17409584	3	3	658	1	0	0	0	0	1	0	0	0	8099	922	32	2	1121	2	KCNJ11	11	17409584	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9762541	17409584	117596932	360	56543										
ANO3	0	genome.wustl.edu	37	chr11	26463504	26463504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgagataacaaaagaaacttCgttaaaaccgtctcggagat	8	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	26463504	26463504	C	T	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	missense	c.86	p.S29L	0.138	NULL	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	22	0	0	14	13	48.15	-	-	-	T	26463504	C	T	26463504	3	4	658	1	0	0	0	0	1	0	0	0	697	893	31	1	92	1	ANO3	11	26463504	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9053920	26463504	108543012	361	56544										
QSER1	0	genome.wustl.edu	37	chr11	32954474	32954474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcagtctcaaagttactcatCtggtcactctcagggtttat	7	10	6	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	32954474	32954474	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.1283	p.S428C	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	27	0	0	21	22	51.16	-	-	-	G	32954474	C	G	32954474	3	3	658	1	0	0	0	0	1	0	0	0	12965	913	32	2	1289	2	QSER1	11	32954474	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6490970	32954474	102052042	362	56545										
PTPRJ	0	genome.wustl.edu	37	chr11	48166619	48166619	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggggctcattgatggggctGagagctatgtgtccttcagt	15	7	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	48166619	48166619	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.2854	p.E952K	0.196	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	72	0	0	28	23	44.23	-	-	-	A	48166619	G	A	48166619	3	1	658	1	0	0	0	0	1	0	0	0	12887	1291	45	2	2917	2	PTPRJ	11	48166619	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	15212145	48166619	86839897	363	56546										
OR4S2	0	genome.wustl.edu	37	chr11	55418639	55418639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgttgacctgttagcaaaggAcaaaaccatctcctatgtgg	9	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	55418639	55418639	A	G	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.260	p.D87G	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	86	0	0	62	47	42.34	-	-	-	G	55418639	A	G	55418639	3	3	658	1	0	0	0	0	1	0	0	0	11156	275	10	5	262	5	OR4S2	11	55418639	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	7252020	55418639	79587877	364	56547										
OR5M3	0	genome.wustl.edu	37	chr11	56237718	56237718	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ataagtaattgtttttttatCtgataacaggttttccaaca	5	5	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	56237718	56237718	C	G	SNP	OR5M3	ENST00000312240	human	ensembl	69_37n	-1	known	missense	c.256	p.D86H	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M3	HGNC	ENSG00000174937	40	0	0	32	23	41.82	-	-	-	G	56237718	C	G	56237718	3	3	658	1	0	0	0	0	1	0	0	0	11248	913	32	2	669	2	OR5M3	11	56237718	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	819079	56237718	78768798	365	56548										
OR1S2	0	genome.wustl.edu	37	chr11	57971339	57971339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgatgcagctctcataagaGatggattggctgttggtttg	14	5	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	57971339	57971339	G	C	SNP	OR1S2	ENST00000302592	human	ensembl	69_37n	-1	known	missense	c.315	p.I105M	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	87	0	0	61	46	42.59	-	-	-	C	57971339	G	C	57971339	3	2	658	1	0	0	0	0	1	0	0	0	11046	932	33	2	665	2	OR1S2	11	57971339	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1733621	57971339	77035177	366	56549										
OR5A1	0	genome.wustl.edu	37	chr11	59211307	59211307	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caactccttatctcctatggTtacatagtgtctgcggtcct	7	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	59211307	59211307	T	C	SNP	OR5A1	ENST00000302030	human	ensembl	69_37n	1	known	silent	c.666	p.G222	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A1	HGNC	ENSG00000172320	53	0	0	58	10	14.71	-	-	-	C	59211307	T	C	59211307	2	2	658	1	0	0	0	0	0	0	0	1	11212	1712	60	5		5	OR5A1	11	59211307	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1239968	59211307	75795209	367	56550										
ZP1	0	genome.wustl.edu	37	chr11	60637153	60637153	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggcaccacccgccatgttCtctgtctcaaccccacaaac	5	19	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	60637153	60637153	C	T	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	silent	c.462	p.F154	0.000	NULL	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	63	0	0	37	35	48.61	-	-	-	T	60637153	C	T	60637153	2	4	658	1	0	0	0	0	0	0	0	1	18308	912	32	2		2	ZP1	11	60637153	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1425846	60637153	74369363	368	56551										
MTA2	0	genome.wustl.edu	37	chr11	62367698	62367699	+	Frame_Shift_Del	DEL	AG	AG	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtccctgcgccggaaaagacAgacaacctttgcctccacat							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	62367698	62367699	AG	-	DEL	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	frame_shift_del	c.130_129	p.C44fs	1.000:1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	53	0	0	57	17	22.97	-	-	-	-	62367699	AG	-	62367698	7	5	658	1	0	1	0	1	0	0	0	0	9981	188	7	0	1940	0	MTA2	11	62367698	Frame_Shift_Del	DEL	AG	TCGA-C8-A26Y-01A-11D-A16D-09	1730545	62367698	72638818	369	56552										
SCYL1	0	genome.wustl.edu	37	chr11	65293615	65293615	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaagccctcagcttcctggtCaacgactgcagcctcatcca	7	16	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	65293615	65293615	C	G	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	silent	c.396	p.V132	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	20	0	0	14	5	26.32	-	-	-	G	65293615	C	G	65293615	2	3	658	1	0	0	0	0	0	0	0	1	14035	813	29	2		2	SCYL1	11	65293615	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2925917	65293615	69712901	370	56553										
ANO1	0	genome.wustl.edu	37	chr11	70007266	70007266	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgcccctttcccccctgcaGattgcagtgacgtttgccat	9	15	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	70007266	70007266	G	T	SNP	ANO1	ENST00000355303	human	ensembl	69_37n	1	known	splice_site	c.1579-1	e17-1	1.000	-	-	-	no_errors	ANO1	HGNC	ENSG00000131620	31	0	0	5	7	58.33	-	-	-	T	70007266	G	T	70007266	5	4	658	1	0	0	0	0	0	0	1	0	694	956	33	2	1644	2	ANO1	11	70007266	Splice_Site	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4713651	70007266	64999250	371	56554										
NUMA1	0	genome.wustl.edu	37	chr11	71724696	71724696	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgcagagcagagctgcgttCtgcagctctggcactgttgc	13	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	71724696	71724696	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.3853	p.E1285K	0.991	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	9	0	0	5	6	54.55	-	-	-	T	71724696	C	T	71724696	3	4	658	1	0	0	0	0	1	0	0	0	10823	922	32	2	2546	2	NUMA1	11	71724696	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1717430	71724696	63281820	372	56555										
INPPL1	0	genome.wustl.edu	37	chr11	71940780	71940780	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtgctaaaggacttcctgtCaggcatccagaagaaggtgg	13	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	71940780	71940780	C	G	SNP	INPPL1	ENST00000298229	human	ensembl	69_37n	1	known	nonsense	c.827	p.S276*	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	32	0	0	16	11	40.74	-	-	-	G	71940780	C	G	71940780	4	3	658	1	0	0	0	0	0	1	0	0	7815	838	29	2	853	2	INPPL1	11	71940780	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	216084	71940780	63065736	373	56556										
TMEM126A	0	genome.wustl.edu	37	chr11	85365293	85365293	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgttttgtaagttttcctttGaatacaggtaaattctactt	6	5	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	85365293	85365293	G	T	SNP	TMEM126A	ENST00000304511	human	ensembl	69_37n	1	known	missense	c.273	p.L91F	0.994	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126A	HGNC	ENSG00000171202	31	0	0	21	28	57.14	-	-	-	T	85365293	G	T	85365293	3	4	658	1	0	0	0	0	1	0	0	0	16133	1281	45	2	279	2	TMEM126A	11	85365293	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	13424513	85365293	49641223	374	56557										
CWF19L2	0	genome.wustl.edu	37	chr11	107288973	107288973	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggctcccaacttgttcttctCatcaacactcaggatgtgaa	7	12	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	107288973	107288973	C	T	SNP	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	missense	c.1474	p.E492K	1.000	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	98	0	0	73	42	36.52	-	-	-	T	107288973	C	T	107288973	3	4	658	1	0	0	0	0	1	0	0	0	4103	835	29	2	1250	2	CWF19L2	11	107288973	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	21923680	107288973	27717543	375	56558										
CWF19L2	0	genome.wustl.edu	37	chr11	107299925	107299925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agattctcttctacacgtttCtaaagacccaggtctcttat	5	11	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	107299925	107299925	C	G	SNP	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	missense	c.1033	p.E345Q	0.803	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	68	0	0	54	45	45	-	-	-	G	107299925	C	G	107299925	3	3	658	1	0	0	0	0	1	0	0	0	4103	922	32	2	1695	2	CWF19L2	11	107299925	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10952	107299925	27706591	376	56559										
DSCAML1	0	genome.wustl.edu	37	chr11	117307850	117307850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgactcactgccatcgtagtCcagggtggcgaactgggctg	14	12	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	117307850	117307850	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.4888	p.D1630N	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	26	0	0	5	14	73.68	-	-	-	T	117307850	C	T	117307850	3	4	658	1	0	0	0	0	1	0	0	0	4804	855	30	2	1485	2	DSCAML1	11	117307850	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10007925	117307850	17698666	377	56560										
OR8A1	0	genome.wustl.edu	37	chr11	124440642	124440642	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggattcaacatcatagtcacGagcttaacagttcttgtttc	7	9	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	124440642	124440642	G	C	SNP	OR8A1	ENST00000284287	human	ensembl	69_37n	1	known	silent	c.678	p.T226	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8A1	HGNC	ENSG00000196119	48	0	0	38	38	50	-	-	-	C	124440642	G	C	124440642	2	2	658	1	0	0	0	0	0	0	0	1	11298	1045	37	3		3	OR8A1	11	124440642	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7132792	124440642	10565874	378	56561										
ROBO3	0	genome.wustl.edu	37	chr11	124739879	124739879	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgatgatgtcacatacactCaagagcgatgcaggcatgta	10	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	11	124739879	124739879	C	G	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	silent	c.681	p.L227	0.137	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	61	0	0	38	35	47.3	-	-	-	G	124739879	C	G	124739879	2	3	658	1	0	0	0	0	0	0	0	1	13601	813	29	2		2	ROBO3	11	124739879	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	299237	124739879	10266637	379	56562										
CCDC77	0	genome.wustl.edu	37	chr12	521048	521048	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctccatccttctaaggagctCctggaatattatcaaaagaa	6	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	521048	521048	C	T	SNP	CCDC77	ENST00000239830	human	ensembl	69_37n	1	known	silent	c.174	p.L58	0.998	NULL	NULL	-	no_errors	CCDC77	HGNC	ENSG00000120647	27	0	0	33	10	22.73	-	-	-	T	521048	C	T	521048	2	4	658	1	0	0	0	0	0	0	0	1	2878	842	30	2		2	CCDC77	12	521048	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		521048	133330847	380	56563										
ZNF384	0	genome.wustl.edu	37	chr12	6782582	6782582	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcatctccgacttggagtaGaatgtcagtgagcacatccg	11	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	6782582	6782582	G	A	SNP	ZNF384	ENST00000361959	human	ensembl	69_37n	-1	known	silent	c.711	p.F237	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746	70	0	0	47	28	37.33	-	-	-	A	6782582	G	A	6782582	2	1	658	1	0	0	0	0	0	0	0	1	17971	933	33	2		2	ZNF384	12	6782582	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6261534	6782582	127069313	381	56564										
CLSTN3	0	genome.wustl.edu	37	chr12	7301602	7301602	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtcctgcgtctccatccctGaagtggagggctacgtggtc	13	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	7301602	7301602	G	T	SNP	CLSTN3	ENST00000266546	human	ensembl	69_37n	1	known	nonsense	c.1882	p.E628*	0.991	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182	20	0	0	14	4	22.22	-	-	-	T	7301602	G	T	7301602	4	4	658	1	0	0	0	0	0	1	0	0	3593	1291	45	2	1932	2	CLSTN3	12	7301602	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	519020	7301602	126550293	382	56565										
CD163L1	0	genome.wustl.edu	37	chr12	7527045	7527045	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagcagcacagacctgagcaGatgacccctgcgtcctcctt	9	15	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	7527045	7527045	G	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.3402	p.I1134M	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	21	0	0	16	5	23.81	-	-	-	C	7527045	G	C	7527045	3	2	658	1	0	0	0	0	1	0	0	0	2997	932	33	2	987	2	CD163L1	12	7527045	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	225443	7527045	126324850	383	56566										
A2ML1	0	genome.wustl.edu	37	chr12	9004584	9004584	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgtcttactgccaccatcttCaattacctaaaggattgcat	5	12	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	9004584	9004584	C	A	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.2439	p.F813L	1.000	pfam_Macroglobln_a2,pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	36	0	0	32	11	25	-	-	-	A	9004584	C	A	9004584	3	1	658	1	0	0	0	0	1	0	0	0	5	825	29	2	2513	2	A2ML1	12	9004584	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1477539	9004584	124847311	384	56567										
A2ML1	0	genome.wustl.edu	37	chr12	9004849	9004849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcatgagtaccagctagaatCatgggcagattctcagacct	10	10	2	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	9004849	9004849	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.2507	p.S836L	0.023	pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	35	0	0	49	13	20.97	-	-	-	T	9004849	C	T	9004849	3	4	658	1	0	0	0	0	1	0	0	0	5	838	29	2	2585	2	A2ML1	12	9004849	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	265	9004849	124847046	385	56568										
A2ML1	0	genome.wustl.edu	37	chr12	9006756	9006756	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttactattagtacaaagattCtggacagcaatgaaccatgt	7	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	9006756	9006756	C	G	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	missense	c.2623	p.L875V	0.924	pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	27	0	0	13	11	45.83	-	-	-	G	9006756	C	G	9006756	3	3	658	1	0	0	0	0	1	0	0	0	5	912	32	2	2705	2	A2ML1	12	9006756	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1907	9006756	124845139	386	56569										
OLR1	0	genome.wustl.edu	37	chr12	10313515	10313515	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	catgccagatccagtcttgcGgacaaggagctgggaaggat	14	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	10313515	10313515	G	T	SNP	OLR1	ENST00000309539	human	ensembl	69_37n	-1	known	missense	c.434	p.P145Q	1.000	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	OLR1	HGNC	ENSG00000173391	32	0	0	26	10	27.03	-	-	-	T	10313515	G	T	10313515	3	4	658	1	0	0	0	0	1	0	0	0	10936	1116	39	3	399	3	OLR1	12	10313515	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1306759	10313515	123538380	387	56570										
DDX47	0	genome.wustl.edu	37	chr12	12967130	12967130	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acaaaacccaccaagatccaGattgaagctattcctttggc	6	12	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	12967130	12967130	G	C	SNP	DDX47	ENST00000358007	human	ensembl	69_37n	1	known	missense	c.153	p.Q51H	0.972	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX47	HGNC	ENSG00000213782	64	0	0	82	12	12.63	-	-	-	C	12967130	G	C	12967130	3	2	658	1	0	0	0	0	1	0	0	0	4396	933	33	2	159	2	DDX47	12	12967130	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2653615	12967130	120884765	388	56571										
EPS8	0	genome.wustl.edu	37	chr12	15822677	15822677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagtccacactttgcccttgGcatcaagcaatttcaatttc	6	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	15822677	15822677	G	C	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	missense	c.287	p.A96G	1.000	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	51	0	0	36	12	25	-	-	-	C	15822677	G	C	15822677	3	2	658	1	0	0	0	0	1	0	0	0	5231	1203	42	4	2249	4	EPS8	12	15822677	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2855547	15822677	118029218	389	56572										
SOX5	0	genome.wustl.edu	37	chr12	23728679	23728679	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgccccactgtttattctcaGagctggcatatggggagagg	13	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	23728679	23728679	G	A	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	silent	c.1258	p.L420	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	106	0	0	100	19	15.97	-	-	-	A	23728679	G	A	23728679	2	1	658	1	0	0	0	0	0	0	0	1	15043	933	33	2		2	SOX5	12	23728679	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7906002	23728679	110123216	390	56573										
OVCH1	0	genome.wustl.edu	37	chr12	29644106	29644106	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcatcgctgtcaggaagacaGattggctgaacagcatttcc	10	10	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	29644106	29644106	G	A	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	silent	c.474	p.I158	0.021	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	46	0	0	55	15	21.43	-	-	-	A	29644106	G	A	29644106	2	1	658	1	0	0	0	0	0	0	0	1	11396	932	33	2		2	OVCH1	12	29644106	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5915427	29644106	104207789	391	56574										
DDX11	0	genome.wustl.edu	37	chr12	31256307	31256307	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggtggagaacctgtgcatGaaggccgtcaaccagtccat	12	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	31256307	31256307	G	T	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	nonsense	c.2509	p.E837*	1.000	smart_ATP-dep_Helicase_C	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	29	0	0	27	12	30.77	-	-	-	T	31256307	G	T	31256307	4	4	658	1	0	0	0	0	0	1	0	0	4374	1291	45	2	2608	2	DDX11	12	31256307	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1612201	31256307	102595588	392	56575										
DENND5B	0	genome.wustl.edu	37	chr12	31545556	31545556	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcccataaatacctctttttCaggtttatgaaaatgtttca	5	8	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	31545556	31545556	C	A	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	nonsense	c.3436	p.E1146*	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	71	0	0	67	16	19.28	-	-	-	A	31545556	C	A	31545556	4	1	658	1	0	0	0	0	0	1	0	0	4473	835	29	2	509	2	DENND5B	12	31545556	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	289249	31545556	102306339	393	56576										
PPHLN1	0	genome.wustl.edu	37	chr12	42792671	42792671	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcaaggcgggatccacagcaCcattgtttactgaccagcca	9	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	42792671	42792671	C	A	SNP	PPHLN1	ENST00000395568	human	ensembl	69_37n	1	known	missense	c.784	p.P262T	0.986	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	42	0	0	48	18	27.27	-	-	-	A	42792671	C	A	42792671	3	1	658	1	0	0	0	0	1	0	0	0	12388	507	18	4	839	4	PPHLN1	12	42792671	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	11247115	42792671	91059224	394	56577										
TMEM117	0	genome.wustl.edu	37	chr12	44693420	44693420	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgattacaacggactggatCagctgggacaagctgaatcg	13	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	44693420	44693420	C	T	SNP	TMEM117	ENST00000266534	human	ensembl	69_37n	1	known	silent	c.666	p.I222	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	114	0	0	97	63	39.13	-	-	-	T	44693420	C	T	44693420	2	4	658	1	0	0	0	0	0	0	0	1	16126	816	29	2		2	TMEM117	12	44693420	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1900749	44693420	89158475	395	56578										
CCNT1	0	genome.wustl.edu	37	chr12	49088068	49088068	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cggagactggcagggaaggcActgcacttgtggtagaagtt	16	7	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	49088068	49088068	A	G	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.929	p.V310A	0.996	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	68	0	0	41	22	34.92	-	-	-	G	49088068	A	G	49088068	3	3	658	1	0	0	0	0	1	0	0	0	2963	159	6	5	1255	5	CCNT1	12	49088068	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4394648	49088068	84763827	396	56579										
MLL2	0	genome.wustl.edu	37	chr12	49440498	49440498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagcagcaggcgtgaggggtCggaggcctggccacacacct	17	12	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	49440498	49440498	C	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.4312	p.D1438N	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	26	0	0	11	5	29.41	-	-	-	T	49440498	C	T	49440498	3	4	658	1	0	0	0	0	1	0	0	0	9692	884	31	1	12461	1	MLL2	12	49440498	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	352430	49440498	84411397	397	56580										
TFCP2	0	genome.wustl.edu	37	chr12	51512435	51512435	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tacgttagggtttcatcatgGagtttcactgctggagaggt	13	6	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	51512435	51512435	G	C	SNP	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	silent	c.243	p.L81	0.997	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	65	0	0	69	12	14.81	-	-	-	C	51512435	G	C	51512435	2	2	658	1	0	0	0	0	0	0	0	1	15890	1161	41	2		2	TFCP2	12	51512435	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2071937	51512435	82339460	398	56581										
SCN8A	0	genome.wustl.edu	37	chr12	52093557	52093557	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaaaggctttgattgggaaGagtatatcaacaataaaagt	9	5	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	52093557	52093557	G	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.910	p.E304Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	45	0	0	32	10	23.81	-	-	-	C	52093557	G	C	52093557	3	2	658	1	0	0	0	0	1	0	0	0	14012	943	33	2	932	2	SCN8A	12	52093557	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	581122	52093557	81758338	399	56582										
ATP5G2	0	genome.wustl.edu	37	chr12	54063126	54063126	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	actgccaagctgctgaggctCtgtgaaaaagaggcaggtag	14	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	54063126	54063126	C	T	SNP	ATP5G2	ENST00000394349	human	ensembl	69_37n	-1	known	splice_site	c.289-1	e4-1	0.159	-	-	-	no_errors	ATP5G2	HGNC	ENSG00000135390	47	0	0	37	10	21.28	-	-	-	T	54063126	C	T	54063126	5	4	658	1	0	0	0	0	0	0	1	0	1158	927	32	2	316	2	ATP5G2	12	54063126	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1969569	54063126	79788769	400	56583										
OR10A7	0	genome.wustl.edu	37	chr12	55615100	55615100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttatctcttttgtgggctgtGgtacccagatgtacttcttc	9	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	55615100	55615100	G	A	SNP	OR10A7	ENST00000326258	human	ensembl	69_37n	1	known	missense	c.292	p.G98S	0.265	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10A7	HGNC	ENSG00000179919	58	0	0	76	20	20.62	-	-	-	A	55615100	G	A	55615100	3	1	658	1	0	0	0	0	1	0	0	0	10968	1348	47	4	294	4	OR10A7	12	55615100	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1551974	55615100	78236795	401	56584										
OR6C76	0	genome.wustl.edu	37	chr12	55820488	55820488	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctcttggctggctggtttcTtggtaatttttccaccactg	10	10	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	55820488	55820488	T	A	SNP	OR6C76	ENST00000328314	human	ensembl	69_37n	1	known	missense	c.451	p.L151M	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	32	0	0	25	8	24.24	-	-	-	A	55820488	T	A	55820488	3	1	658	1	0	0	0	0	1	0	0	0	11273	1606	56	5	453	5	OR6C76	12	55820488	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	205388	55820488	78031407	402	56585										
SMARCC2	0	genome.wustl.edu	37	chr12	56563682	56563682	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctcctctatagcaccccctCcttctcggggttcctgaaat	6	17	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	56563682	56563682	C	A	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.2333	p.G778V	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	70	0	0	71	18	20.22	-	-	-	A	56563682	C	A	56563682	3	1	658	1	0	0	0	0	1	0	0	0	14865	855	30	2	1335	2	SMARCC2	12	56563682	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	743194	56563682	77288213	403	56586										
SMARCC2	0	genome.wustl.edu	37	chr12	56567524	56567524	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caccagccctgatggtgtgtCagccaagacatggaagtgag	13	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	56567524	56567524	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.1606	p.D536N	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	32	0	0	24	7	21.88	-	-	-	T	56567524	C	T	56567524	3	4	658	1	0	0	0	0	1	0	0	0	14865	826	29	2	2183	2	SMARCC2	12	56567524	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3842	56567524	77284371	404	56587										
LRP1	0	genome.wustl.edu	37	chr12	57604145	57604145	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aacggtggcagctgtttcctCaatgcacggaggcagcccaa	12	12	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	57604145	57604145	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	silent	c.12636	p.L4212	0.999	superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	15	0	0	13	6	31.58	-	-	-	T	57604145	C	T	57604145	2	4	658	1	0	0	0	0	0	0	0	1	9017	813	29	2		2	LRP1	12	57604145	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1036621	57604145	76247750	405	56588										
AVIL	0	genome.wustl.edu	37	chr12	58204223	58204223	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcgtcggccaagggtgtcctGaaggaccttcatcagctctg	13	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	58204223	58204223	G	T	SNP	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	missense	c.670	p.Q224K	0.993	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	34	0	0	36	11	22.92	-	-	-	T	58204223	G	T	58204223	3	4	658	1	0	0	0	0	1	0	0	0	1231	1299	45	2	1845	2	AVIL	12	58204223	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	600078	58204223	75647672	406	56589										
LRIG3	0	genome.wustl.edu	37	chr12	59271206	59271206	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gttggtaatgctgcaatcttCattcctccgccttgtgtggt	10	10	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	59271206	59271206	C	A	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	nonsense	c.2512	p.E838*	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	36	0	0	16	4	20	-	-	-	A	59271206	C	A	59271206	4	1	658	1	0	0	0	0	0	1	0	0	9012	835	29	2	867	2	LRIG3	12	59271206	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1066983	59271206	74580689	407	56590										
HELB	0	genome.wustl.edu	37	chr12	66703995	66703995	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gacaatggtgaccatatttgGactaatggtgaaaatgaaat	10	4	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	66703995	66703995	G	A	SNP	HELB	ENST00000247815	human	ensembl	69_37n	1	known	nonsense	c.1287	p.W429*	0.000	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	34	0	0	39	13	25	-	-	-	A	66703995	G	A	66703995	4	1	658	1	0	0	0	0	0	1	0	0	7096	1183	41	2	1301	2	HELB	12	66703995	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7432789	66703995	67147900	408	56591										
KRR1	0	genome.wustl.edu	37	chr12	75900637	75900637	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgatatatggatcaaaagtCttctttgtagtacaaacagt	7	5	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	75900637	75900637	C	T	SNP	KRR1	ENST00000229214	human	ensembl	69_37n	-1	known	silent	c.318	p.K106	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	KRR1	HGNC	ENSG00000111615	51	0	0	51	18	26.09	-	-	-	T	75900637	C	T	75900637	2	4	658	1	0	0	0	0	0	0	0	1	8499	912	32	2		2	KRR1	12	75900637	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9196642	75900637	57951258	409	56592										
PPP1R12A	0	genome.wustl.edu	37	chr12	80266599	80266599	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggcttactctgcaatatcAagatatccacaggaagctgc	8	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	80266599	80266599	A	C	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	silent	c.357	p.L119	0.514	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	54	0	0	54	22	28.95	-	-	-	C	80266599	A	C	80266599	2	2	658	1	0	0	0	0	0	0	0	1	12431	117	5	5		5	PPP1R12A	12	80266599	Silent	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4365962	80266599	53585296	410	56593										
PLEKHG7	0	genome.wustl.edu	37	chr12	93134665	93134665	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taagatatctgcaaactcatGaatatctcctagatgtggat	7	7	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	93134665	93134665	G	A	SNP	PLEKHG7	ENST00000344636	human	ensembl	69_37n	1	known	missense	c.40	p.E14K	0.997	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG7	HGNC	ENSG00000187510	43	0	0	40	12	22.64	-	-	-	A	93134665	G	A	93134665	3	1	658	1	0	0	0	0	1	0	0	0	12149	1291	45	2	46	2	PLEKHG7	12	93134665	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	12868066	93134665	40717230	411	56594										
EEA1	0	genome.wustl.edu	37	chr12	93221811	93221812	+	Frame_Shift_Del	DEL	CT	CT	-													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgagcttcccctagttggcgCtctgtctccagaagtttgct							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	93221811	93221812	CT	-	DEL	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	frame_shift_del	c.1281_1280	p.E427fs	0.998:1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	50	0	0	46	12	20.69	-	-	-	-	93221812	CT	-	93221811	7	5	658	1	0	1	0	1	0	0	0	0	4956	796	28	0	3026	0	EEA1	12	93221811	Frame_Shift_Del	DEL	CT	TCGA-C8-A26Y-01A-11D-A16D-09	87146	93221811	40630084	412	56595										
PLXNC1	0	genome.wustl.edu	37	chr12	94692560	94692560	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctgacgtcgtacatatttgGaaaacaaacaggtgggaatg	11	7	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	94692560	94692560	G	A	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	nonsense	c.4227	p.W1409*	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	31	0	0	62	20	24.39	-	-	-	A	94692560	G	A	94692560	4	1	658	1	0	0	0	0	0	1	0	0	12200	1183	41	2	4333	2	PLXNC1	12	94692560	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1470749	94692560	39159335	413	56596										
NR1H4	0	genome.wustl.edu	37	chr12	100955671	100955671	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttcccccacaggtatctctGatgaatatataacacctatg	5	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	100955671	100955671	G	A	SNP	NR1H4	ENST00000551379	human	ensembl	69_37n	1	known	missense	c.1117	p.D373N	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504	44	0	0	66	10	12.82	-	-	-	A	100955671	G	A	100955671	3	1	658	1	0	0	0	0	1	0	0	0	10692	1290	45	2	1105	2	NR1H4	12	100955671	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6263111	100955671	32896224	414	56597										
HCFC2	0	genome.wustl.edu	37	chr12	104487278	104487278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctaatgccattttatatccaTctttggcatcaaatgcttct	4	10	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	104487278	104487278	T	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.1399	p.S467T	0.002	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	47	0	0	46	17	26.98	-	-	-	A	104487278	T	A	104487278	3	1	658	1	0	0	0	0	1	0	0	0	7044	1435	50	5	1437	5	HCFC2	12	104487278	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	3531607	104487278	29364617	415	56598										
KIAA1033	0	genome.wustl.edu	37	chr12	105538125	105538125	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcgactttctgtgcatactCatttaaagctggatgaccga	9	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	105538125	105538125	C	G	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.2071	p.H691D	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	44	0	0	68	14	17.07	-	-	-	G	105538125	C	G	105538125	3	3	658	1	0	0	0	0	1	0	0	0	8258	826	29	2	2153	2	KIAA1033	12	105538125	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1050847	105538125	28313770	416	56599										
MTERFD3	0	genome.wustl.edu	37	chr12	107371776	107371776	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggagaatttcaaagctggtGaaaccttgctcctggagaaa	11	7	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	107371776	107371776	G	A	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	silent	c.717	p.F239	0.999	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	22	0	0	21	6	22.22	-	-	-	A	107371776	G	A	107371776	2	1	658	1	0	0	0	0	0	0	0	1	9993	1281	45	2		2	MTERFD3	12	107371776	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1833651	107371776	26480119	417	56600										
WSCD2	0	genome.wustl.edu	37	chr12	108589796	108589796	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaggcccagctgagggtgctGagctgtccttcttgggtgac	16	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	108589796	108589796	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.187	p.E63K	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	25	0	0	19	8	29.63	-	-	-	A	108589796	G	A	108589796	3	1	658	1	0	0	0	0	1	0	0	0	17504	1291	45	2	189	2	WSCD2	12	108589796	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1218020	108589796	25262099	418	56601										
ALKBH2	0	genome.wustl.edu	37	chr12	109526219	109526219	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tatgccggaagacaaagtctCtgcaggcaccgaaggagaca	12	10	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	109526219	109526219	C	G	SNP	ALKBH2	ENST00000343075	human	ensembl	69_37n	-1	known	missense	c.578	p.R193T	1.000	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH2	HGNC	ENSG00000189046	34	0	0	21	9	30	-	-	-	G	109526219	C	G	109526219	3	3	658	1	0	0	0	0	1	0	0	0	527	913	32	2	211	2	ALKBH2	12	109526219	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	936423	109526219	24325676	419	56602										
TRPV4	0	genome.wustl.edu	37	chr12	110230226	110230226	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggaatcggaaaaggtccttGaagagaatctaaagacccca	10	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	110230226	110230226	G	A	SNP	TRPV4	ENST00000261740	human	ensembl	69_37n	-1	known	silent	c.1833	p.F611	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199	24	0	0	22	7	24.14	-	-	-	A	110230226	G	A	110230226	2	1	658	1	0	0	0	0	0	0	0	1	16694	1281	45	2		2	TRPV4	12	110230226	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	704007	110230226	23621669	420	56603										
RAD9B	0	genome.wustl.edu	37	chr12	110957611	110957611	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttttagacctctggctttGagtattgatgatatgttagt	9	4	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	110957611	110957611	G	C	SNP	RAD9B	ENST00000392672	human	ensembl	69_37n	1	known	missense	c.780	p.L260F	1.000	pfam_Rad9,pirsf_Cell_cycle_RAD9	pfam_Rad9,pirsf_Cell_cycle_RAD9	-	no_errors	RAD9B	HGNC	ENSG00000151164	105	0	0	115	24	17.27	-	-	-	C	110957611	G	C	110957611	3	2	658	1	0	0	0	0	1	0	0	0	13079	1281	45	2	814	2	RAD9B	12	110957611	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	727385	110957611	22894284	421	56604										
CLIP1	0	genome.wustl.edu	37	chr12	122861994	122861994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttgattgagccagcctctGaaaggttggagatagattca	11	7	3	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	122861994	122861994	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	missense	c.599	p.S200L	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	97	0	0	96	27	21.77	-	-	-	A	122861994	G	A	122861994	3	1	658	1	0	0	0	0	1	0	0	0	3562	1294	45	2	3776	2	CLIP1	12	122861994	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	11904383	122861994	10989901	422	56605										
PIWIL1	0	genome.wustl.edu	37	chr12	130839094	130839094	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgagcagcaatacaaccaaGagatcaccgacttgaagcag	9	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	130839094	130839094	G	C	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.1057	p.E353Q	0.998	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	20	0	0	15	8	34.78	-	-	-	C	130839094	G	C	130839094	3	2	658	1	0	0	0	0	1	0	0	0	12031	943	33	2	1091	2	PIWIL1	12	130839094	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7977100	130839094	3012801	423	56606										
EP400	0	genome.wustl.edu	37	chr12	132516515	132516515	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taggaactgatgaggagtttCaacagagacaggcggatttt	13	5	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	132516515	132516515	C	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.5880	p.F1960L	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	43	0	0	47	17	26.15	-	-	-	A	132516515	C	A	132516515	3	1	658	1	0	0	0	0	1	0	0	0	5186	825	29	2	5883	2	EP400	12	132516515	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1677421	132516515	1335380	424	56607										
P2RX2	0	genome.wustl.edu	37	chr12	133198141	133198141	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggggtggtaaggaaccctctCtggggtcccagcgggtgcgg	19	10	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	12	133198141	133198141	C	T	SNP	P2RX2	ENST00000343948	human	ensembl	69_37n	1	known	silent	c.1077	p.L359	0.000	NULL	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	26	0	0	25	7	21.88	-	-	-	T	133198141	C	T	133198141	2	4	658	1	0	0	0	0	0	0	0	1	11413	900	32	2		2	P2RX2	12	133198141	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	681626	133198141	653754	425	56608										
RNF6	0	genome.wustl.edu	37	chr13	26793747	26793747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atggtcttgaggtaaggtttCttcactgccaccatctgatc	9	10	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	26793747	26793747	C	G	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	missense	c.40	p.E14Q	0.990	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	73	0	0	30	51	62.96	-	-	-	G	26793747	C	G	26793747	3	3	658	1	0	0	0	0	1	0	0	0	13584	922	32	2	2029	2	RNF6	13	26793747	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		26793747	88376131	426	56609										
SPG20	0	genome.wustl.edu	37	chr13	36903599	36903599	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttagttggtcagaggagggtCtagttcttccagggatttgg	15	5	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	36903599	36903599	C	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.1064	p.R355T	0.062	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	106	0	0	82	81	49.69	-	-	-	G	36903599	C	G	36903599	3	3	658	1	0	0	0	0	1	0	0	0	15133	913	32	2	960	2	SPG20	13	36903599	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10109852	36903599	78266279	427	56610										
DGKH	0	genome.wustl.edu	37	chr13	42733494	42733494	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccatcgggaaggacattataGaagatgaagatggcgtaagc	13	6	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	42733494	42733494	G	A	SNP	DGKH	ENST00000337343	human	ensembl	69_37n	1	known	missense	c.715	p.E239K	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	30	0	0	16	13	44.83	-	-	-	A	42733494	G	A	42733494	3	1	658	1	0	0	0	0	1	0	0	0	4506	943	33	2	737	2	DGKH	13	42733494	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5829895	42733494	72436384	428	56611										
TBC1D4	0	genome.wustl.edu	37	chr13	75876479	75876479	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttattaggcaatctgtgtctGagtcggtactgtaaagccag	11	7	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	75876479	75876479	G	A	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	silent	c.2811	p.L937	0.005	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	64	0	0	142	42	22.7	-	-	-	A	75876479	G	A	75876479	2	1	658	1	0	0	0	0	0	0	0	1	15717	1277	45	2		2	TBC1D4	13	75876479	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	33142985	75876479	39293399	429	56612										
SLITRK1	0	genome.wustl.edu	37	chr13	84454773	84454773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctcttgcccatttgtcttGaaaggagttggcaggggtcc	12	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	84454773	84454773	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	silent	c.870	p.F290	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	64	0	0	111	79	41.58	-	-	-	A	84454773	G	A	84454773	2	1	658	1	0	0	0	0	0	0	0	1	14831	1281	45	2		2	SLITRK1	13	84454773	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	8578294	84454773	30715105	430	56613										
CLDN10	0	genome.wustl.edu	37	chr13	96212695	96212695	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaatcacaacggaattctttGatcctctctttgttgagcaa	6	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	96212695	96212695	G	C	SNP	CLDN10	ENST00000299339	human	ensembl	69_37n	1	known	missense	c.442	p.D148H	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin10,prints_Claudin	-	no_errors	CLDN10	HGNC	ENSG00000134873	67	0	0	161	52	24.41	-	-	-	C	96212695	G	C	96212695	3	2	658	1	0	0	0	0	1	0	0	0	3502	1290	45	2	670	2	CLDN10	13	96212695	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	11757922	96212695	18957183	431	56614										
HS6ST3	0	genome.wustl.edu	37	chr13	97485350	97485350	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagaagcggcgggaggagcgGaggctgcagcgagagcacag	20	9	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	97485350	97485350	G	A	SNP	HS6ST3	ENST00000376705	human	ensembl	69_37n	1	known	silent	c.1314	p.R438	0.977	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	36	0	0	24	11	31.43	-	-	-	A	97485350	G	A	97485350	2	1	658	1	0	0	0	0	0	0	0	1	7423	1161	41	2		2	HS6ST3	13	97485350	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1272655	97485350	17684528	432	56615										
FARP1	0	genome.wustl.edu	37	chr13	99093081	99093081	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccatggtggacttcagcatCgcagtggaggtatgcagggg	16	8	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	99093081	99093081	C	T	SNP	FARP1	ENST00000376586	human	ensembl	69_37n	1	known	silent	c.2880	p.I960	0.408	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP1	HGNC	ENSG00000152767	15	0	0	36	10	21.74	-	-	-	T	99093081	C	T	99093081	2	4	658	1	0	0	0	0	0	0	0	1	5722	874	31	1		1	FARP1	13	99093081	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1607731	99093081	16076797	433	56616										
TUBGCP3	0	genome.wustl.edu	37	chr13	113223531	113223531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagttggggcgaagttgctgCcaatcacccgcacagcatac	11	13	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	113223531	113223531	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.119	p.G40D	1.000	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	58	0	0	56	43	43.43	-	-	-	T	113223531	C	T	113223531	3	4	658	1	0	0	0	0	1	0	0	0	16864	739	26	4	2688	4	TUBGCP3	13	113223531	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	14130450	113223531	1946347	434	56617										
UPF3A	0	genome.wustl.edu	37	chr13	115070305	115070305	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tatgatccaggagctcgcttCcgagcgcgagagtgtggcgg	16	10	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	13	115070305	115070305	C	T	SNP	UPF3A	ENST00000375299	human	ensembl	69_37n	1	known	silent	c.1344	p.F448	0.251	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062	20	0	0	24	16	39.02	-	-	-	T	115070305	C	T	115070305	2	4	658	1	0	0	0	0	0	0	0	1	17102	854	30	2		2	UPF3A	13	115070305	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1846774	115070305	99573	435	56618										
PSMB5	0	genome.wustl.edu	37	chr14	23504012	23504012	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccctggacctagatccagcaGatctgcacgacccccaagtc	8	17	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	23504012	23504012	G	T	SNP	PSMB5	ENST00000361611	human	ensembl	69_37n	-1	known	missense	c.79	p.L27M	1.000	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB5	HGNC	ENSG00000100804	18	0	0	12	11	47.83	-	-	-	T	23504012	G	T	23504012	3	4	658	1	0	0	0	0	1	0	0	0	12760	933	33	2	813	2	PSMB5	14	23504012	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		23504012	83845528	436	56619										
MYH7	0	genome.wustl.edu	37	chr14	23894032	23894032	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcagcagggacaccatcttCtcctccagctccttgcggcg	10	16	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	23894032	23894032	C	G	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.2625	p.E875D	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	37	0	0	29	13	30.95	-	-	-	G	23894032	C	G	23894032	3	3	658	1	0	0	0	0	1	0	0	0	10111	912	32	2	3258	2	MYH7	14	23894032	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	390020	23894032	83455508	437	56620										
HECTD1	0	genome.wustl.edu	37	chr14	31642457	31642457	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctccccagaactatctaatCtccggagtcctgggattctg	9	13	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	31642457	31642457	C	T	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.1061	p.R354K	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	43	0	0	35	29	45.31	-	-	-	T	31642457	C	T	31642457	3	4	658	1	0	0	0	0	1	0	0	0	7090	913	32	2	6923	2	HECTD1	14	31642457	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7748425	31642457	75707083	438	56621										
NPAS3	0	genome.wustl.edu	37	chr14	33684482	33684482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgaattggccaagttgttgCctcttcctgcagccattacc	8	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	33684482	33684482	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	69_37n	1	known	missense	c.235	p.P79S	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS3	HGNC	ENSG00000151322	44	0	0	34	12	25.53	-	-	-	T	33684482	C	T	33684482	3	4	658	1	0	0	0	0	1	0	0	0	10636	739	26	4	245	4	NPAS3	14	33684482	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2042025	33684482	73665058	439	56622										
NID2	0	genome.wustl.edu	37	chr14	52534670	52534670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggtgggggtaaagcgcgcaGagcgcgggaagccagcgcgc	21	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	52534670	52534670	G	C	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.440	p.S147C	0.041	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	10	0	0	6	8	57.14	-	-	-	C	52534670	G	C	52534670	3	2	658	1	0	0	0	0	1	0	0	0	10487	942	33	2	3771	2	NID2	14	52534670	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	18850188	52534670	54814870	440	56623										
TXNDC16	0	genome.wustl.edu	37	chr14	52978104	52978104	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgtgcatattccacatcctCagagctacaaattaaaaatt	4	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	52978104	52978104	C	T	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	missense	c.610	p.E204K	0.384	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	38	0	0	28	28	49.12	-	-	-	T	52978104	C	T	52978104	3	4	658	1	0	0	0	0	1	0	0	0	16892	835	29	2	1919	2	TXNDC16	14	52978104	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	443434	52978104	54371436	441	56624										
ARID4A	0	genome.wustl.edu	37	chr14	58831283	58831283	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgaacctcatatagaagctCatagtcttgaattgtcttca	7	8	5	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	58831283	58831283	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	69_37n	1	known	missense	c.2476	p.H826Y	0.005	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219	18	0	0	8	10	55.56	-	-	-	T	58831283	C	T	58831283	3	4	658	1	0	0	0	0	1	0	0	0	921	826	29	2	2550	2	ARID4A	14	58831283	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5853179	58831283	48518257	442	56625										
SYNE2	0	genome.wustl.edu	37	chr14	64687251	64687251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgagagccccgaatccacaGagctccaaagtagactccgc	9	16	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	64687251	64687251	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.19957	p.E6653Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	15	0	0	12	11	47.83	-	-	-	C	64687251	G	C	64687251	3	2	658	1	0	0	0	0	1	0	0	0	15538	943	33	2	20395	2	SYNE2	14	64687251	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5855968	64687251	42662289	443	56626										
KIAA0317	0	genome.wustl.edu	37	chr14	75130698	75130698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctccaggtggtagctgagagGagcctgttgtgaactgaagt	15	7	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	75130698	75130698	G	A	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	missense	c.2273	p.S758F	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	52	0	0	26	25	49.02	-	-	-	A	75130698	G	A	75130698	3	1	658	1	0	0	0	0	1	0	0	0	8219	1174	41	2	206	2	KIAA0317	14	75130698	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	10443447	75130698	32218842	444	56627										
YLPM1	0	genome.wustl.edu	37	chr14	75266088	75266088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcgagagcatgggtatgatcGagatttccgtgataggggtg	16	5	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	75266088	75266088	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.4088	p.R1363Q	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	37	0	0	23	27	54	-	-	-	A	75266088	G	A	75266088	3	1	658	1	0	0	0	0	1	0	0	0	17583	1058	37	1	4106	1	YLPM1	14	75266088	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	135390	75266088	32083452	445	56628										
ALKBH1	0	genome.wustl.edu	37	chr14	78174215	78174215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcgtgggccgccgagaagtCgatgaccccttccaggtctg	14	13	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	78174215	78174215	C	T	SNP	ALKBH1	ENST00000216489	human	ensembl	69_37n	-1	known	missense	c.133	p.D45N	1.000	NULL	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601	9	0	0	3	8	72.73	-	-	-	T	78174215	C	T	78174215	3	4	658	1	0	0	0	0	1	0	0	0	526	884	31	1	1060	1	ALKBH1	14	78174215	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2908127	78174215	29175325	446	56629										
EML5	0	genome.wustl.edu	37	chr14	89085011	89085011	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tacctggagataactgctatCtgcagagaagtccatttgaa	9	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	89085011	89085011	C	G	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.5521	p.D1841H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	34	0	0	21	29	58	-	-	-	G	89085011	C	G	89085011	3	3	658	1	0	0	0	0	1	0	0	0	5137	913	32	2	432	2	EML5	14	89085011	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	10910796	89085011	18264529	447	56630										
SERPINA1	0	genome.wustl.edu	37	chr14	94849257	94849257	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccggaatctccgtgaggttGaaattcaggccctccaggat	11	11	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	94849257	94849257	G	A	SNP	SERPINA1	ENST00000355814	human	ensembl	69_37n	-1	known	silent	c.318	p.F106	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249	44	0	0	16	27	61.36	-	-	-	A	94849257	G	A	94849257	2	1	658	1	0	0	0	0	0	0	0	1	14174	1281	45	2		2	SERPINA1	14	94849257	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5764246	94849257	12500283	448	56631										
SETD3	0	genome.wustl.edu	37	chr14	99924822	99924822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acacagcaaatgaaaggccaGtgcgatgtttcccatggctt	10	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	99924822	99924822	G	T	SNP	SETD3	ENST00000331768	human	ensembl	69_37n	-1	known	missense	c.469	p.L157M	0.996	pfam_SET_dom	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576	59	0	0	40	32	44.44	-	-	-	T	99924822	G	T	99924822	3	4	658	1	0	0	0	0	1	0	0	0	14220	1020	36	4	1393	4	SETD3	14	99924822	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5075565	99924822	7424718	449	56632										
TRAF3	0	genome.wustl.edu	37	chr14	103352554	103352554	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agacaccgactgtccctgcgTggtggtgtcctgccctcaca	11	15	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	14	103352554	103352554	T	C	SNP	TRAF3	ENST00000392745	human	ensembl	69_37n	1	known	missense	c.599	p.V200A	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323	28	0	0	15	10	40	-	-	-	C	103352554	T	C	103352554	3	2	658	1	0	0	0	0	1	0	0	0	16535	1696	59	5	617	5	TRAF3	14	103352554	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	3427732	103352554	3996986	450	56633										
GJD2	0	genome.wustl.edu	37	chr15	35044878	35044878	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgccacttacagcaaacatgAacactagaaagacagtcttc	6	11	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	35044878	35044878	A	G	SNP	GJD2	ENST00000290374	human	ensembl	69_37n	-1	known	missense	c.767	p.F256S	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248	56	0	0	50	11	18.03	-	-	-	G	35044878	A	G	35044878	3	3	658	1	0	0	0	0	1	0	0	0	6469	246	9	5	202	5	GJD2	15	35044878	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09		35044878	67486514	451	56634										
EIF2AK4	0	genome.wustl.edu	37	chr15	40235627	40235627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgccaaaggtctatcaaatGaaagtgtcaatttgttaaaa	7	5	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	40235627	40235627	G	A	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.301	p.E101K	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	48	0	0	47	16	25.4	-	-	-	A	40235627	G	A	40235627	3	1	658	1	0	0	0	0	1	0	0	0	5034	1291	45	2	311	2	EIF2AK4	15	40235627	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5190749	40235627	62295765	452	56635										
NUSAP1	0	genome.wustl.edu	37	chr15	41625187	41625187	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctctctagaggagctggactCcctcaagtacagtgacctgc	10	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	41625187	41625187	C	G	SNP	NUSAP1	ENST00000559596	human	ensembl	69_37n	1	known	missense	c.32	p.S11C	1.000	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804	28	0	0	36	11	23.4	-	-	-	G	41625187	C	G	41625187	3	3	658	1	0	0	0	0	1	0	0	0	10851	855	30	2	34	2	NUSAP1	15	41625187	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1389560	41625187	60906205	453	56636										
ZFP106	0	genome.wustl.edu	37	chr15	42710150	42710150	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcagagagcaaccatgccaCtggagagaaagaaaatgagg	12	7	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	42710150	42710150	C	G	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	splice_site	c.5449-1	e18-1	1.000	-	-	-	no_errors	ZFP106	HGNC	ENSG00000103994	42	0	0	48	11	18.64	-	-	-	G	42710150	C	G	42710150	5	3	658	1	0	0	0	0	0	0	1	0	17733	579	20	4	211	4	ZFP106	15	42710150	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1084963	42710150	59821242	454	56637										
UBR1	0	genome.wustl.edu	37	chr15	43269025	43269025	+	Missense_Mutation	SNP	T	T	A													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaggctgcagatcaacagggTcatcccaatacaaggatggg							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	43269025	43269025	T	A	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.4259	p.D1420V	0.998	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	27	0	0	31	17	34.69	-	-	-	A	43269025	T	A	43269025	3	1	658	1	0	0	0	0	1	0	0	0	16998	1667	58	5	1026	5	UBR1	15	43269025	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	558875	43269025	59262367	455	56638	442	2								
UBR1	0	genome.wustl.edu	37	chr15	43269026	43269026	+	Missense_Mutation	SNP	C	C	T													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggctgcagatcaacagggtCatcccaatacaaggatggga							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	43269026	43269026	C	T	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.4258	p.D1420N	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	27	0	0	32	17	34.69	-	-	-	T	43269026	C	T	43269026	3	4	658	1	0	0	0	0	1	0	0	0	16998	826	29	2	1027	2	UBR1	15	43269026	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1	43269026	59262366	456	56639	442	2								
TGM7	0	genome.wustl.edu	37	chr15	43574073	43574073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgtaggagctggtgatgctCtggcgctggtctgaccccac	14	11	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	43574073	43574073	C	G	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	missense	c.1320	p.Q440H	0.962	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	27	0	0	32	19	37.25	-	-	-	G	43574073	C	G	43574073	3	3	658	1	0	0	0	0	1	0	0	0	15930	912	32	2	832	2	TGM7	15	43574073	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	305047	43574073	58957319	457	56640										
TRIM69	0	genome.wustl.edu	37	chr15	45047337	45047337	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acattctgtcctgagtgtaaGatgctatgtcagtataacaa	8	7	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	45047337	45047337	G	A	SNP	TRIM69	ENST00000329464	human	ensembl	69_37n	1	known	silent	c.246	p.K82	0.070	pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM69	HGNC	ENSG00000185880	40	0	0	37	28	43.08	-	-	-	A	45047337	G	A	45047337	2	1	658	1	0	0	0	0	0	0	0	1	16638	933	33	2		2	TRIM69	15	45047337	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1473264	45047337	57484055	458	56641										
SORD	0	genome.wustl.edu	37	chr15	45353336	45353336	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaagatgggccgatacaatCtgtcaccttccatcttcttc	7	13	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	45353336	45353336	C	T	SNP	SORD	ENST00000267814	human	ensembl	69_37n	1	known	silent	c.337	p.L113	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	SORD	HGNC	ENSG00000140263	63	0	0	63	24	27.59	-	-	-	T	45353336	C	T	45353336	2	4	658	1	0	0	0	0	0	0	0	1	15022	912	32	2		2	SORD	15	45353336	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	305999	45353336	57178056	459	56642										
USP8	0	genome.wustl.edu	37	chr15	50751285	50751285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aacaaaaaaggcaggaaacaGgaagagaggatggtggcaca	14	5	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	50751285	50751285	G	A	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.424	p.G142R	0.998	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	87	0	0	94	28	22.95	-	-	-	A	50751285	G	A	50751285	3	1	658	1	0	0	0	0	1	0	0	0	17186	1001	35	4	438	4	USP8	15	50751285	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5397949	50751285	51780107	460	56643										
TRPM7	0	genome.wustl.edu	37	chr15	50905027	50905027	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttccataactgtatcaatCttccagggaaaataaagtta	5	8	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	50905027	50905027	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	69_37n	-1	known	splice_site	c.1771-1	e16-1	0.999	-	-	-	no_errors	TRPM7	HGNC	ENSG00000092439	61	0	0	58	32	35.56	-	-	-	T	50905027	C	T	50905027	5	4	658	1	0	0	0	0	0	0	1	0	16687	927	32	2	3923	2	TRPM7	15	50905027	Splice_Site	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	153742	50905027	51626365	461	56644										
WDR72	0	genome.wustl.edu	37	chr15	53815460	53815460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acatctgtcaggcatgtcctCcacgtcttggaagtttgccg	10	12	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	53815460	53815460	C	T	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.3208	p.E1070K	0.989	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	60	0	0	96	22	18.64	-	-	-	T	53815460	C	T	53815460	3	4	658	1	0	0	0	0	1	0	0	0	17419	864	30	2	108	2	WDR72	15	53815460	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2910433	53815460	48715932	462	56645										
CCPG1	0	genome.wustl.edu	37	chr15	55651931	55651931	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttaggaaaaacttattgatGaactgatcaagttcgttcca	7	6	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	55651931	55651931	G	A	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	silent	c.2040	p.F680	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	30	0	0	57	12	17.39	-	-	-	A	55651931	G	A	55651931	2	1	658	1	0	0	0	0	0	0	0	1	2967	1281	45	2		2	CCPG1	15	55651931	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1836471	55651931	46879461	463	56646										
DYX1C1	0	genome.wustl.edu	37	chr15	55727116	55727116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccataccttagaagaatctTcaatagccttgtgtaagttt	6	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	55727116	55727116	T	C	SNP	DYX1C1	ENST00000321149	human	ensembl	69_37n	-1	known	missense	c.1034	p.E345G	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_CS_domain,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS-like_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061	70	0	0	102	58	36.25	-	-	-	C	55727116	T	C	55727116	3	2	658	1	0	0	0	0	1	0	0	0	4897	1783	62	5	343	5	DYX1C1	15	55727116	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	75185	55727116	46804276	464	56647										
PRTG	0	genome.wustl.edu	37	chr15	55967747	55967747	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtattctgtgtcacatggtCagacatctggctggctccca	10	11	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	55967747	55967747	C	T	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.1516	p.D506N	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	28	0	0	29	17	36.96	-	-	-	T	55967747	C	T	55967747	3	4	658	1	0	0	0	0	1	0	0	0	12718	826	29	2	1984	2	PRTG	15	55967747	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	240631	55967747	46563645	465	56648										
BNIP2	0	genome.wustl.edu	37	chr15	59963389	59963389	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtatttgtattaccttctatCaatttgctgataacatttcc	4	8	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	59963389	59963389	C	T	SNP	BNIP2	ENST00000267859	human	ensembl	69_37n	-1	known	missense	c.1063	p.D355N	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	BNIP2	HGNC	ENSG00000140299	56	0	0	81	46	36.22	-	-	-	T	59963389	C	T	59963389	3	4	658	1	0	0	0	0	1	0	0	0	1482	826	29	2	260	2	BNIP2	15	59963389	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3995642	59963389	42568003	466	56649										
TLN2	0	genome.wustl.edu	37	chr15	63053955	63053955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacccttgattgaagctgtgGagaacctgacagcgttcgcc	11	12	0	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	63053955	63053955	G	A	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.4714	p.E1572K	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	40	0	0	42	19	31.15	-	-	-	A	63053955	G	A	63053955	3	1	658	1	0	0	0	0	1	0	0	0	16043	1175	41	2	4852	2	TLN2	15	63053955	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3090566	63053955	39477437	467	56650										
TPM1	0	genome.wustl.edu	37	chr15	63354780	63354780	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aataaatcattacaggctgaGactcgggctgagtttgcgga	12	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	63354780	63354780	G	C	SNP	TPM1	ENST00000267996	human	ensembl	69_37n	1	known	missense	c.708	p.E236D	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416	44	0	0	49	15	23.08	-	-	-	C	63354780	G	C	63354780	3	2	658	1	0	0	0	0	1	0	0	0	16501	933	33	2	1084	2	TPM1	15	63354780	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	300825	63354780	39176612	468	56651										
PIAS1	0	genome.wustl.edu	37	chr15	68466118	68466118	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcgggcccttacatgttctCatctacaatgttttgacgca	8	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	68466118	68466118	C	T	SNP	PIAS1	ENST00000249636	human	ensembl	69_37n	1	known	missense	c.1057	p.H353Y	1.000	pfam_Znf_MIZ,pfscan_Znf_MIZ	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS1	HGNC	ENSG00000033800	64	0	0	63	19	23.17	-	-	-	T	68466118	C	T	68466118	3	4	658	1	0	0	0	0	1	0	0	0	11949	826	29	2	1091	2	PIAS1	15	68466118	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5111338	68466118	34065274	469	56652										
UACA	0	genome.wustl.edu	37	chr15	70959543	70959543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccaggggtacagaagagttCttttgattctccaacaattg	10	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	70959543	70959543	C	G	SNP	UACA	ENST00000322954	human	ensembl	69_37n	-1	known	missense	c.3480	p.K1160N	0.616	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	67	0	0	85	14	13.86	-	-	-	G	70959543	C	G	70959543	3	3	658	1	0	0	0	0	1	0	0	0	16921	912	32	2	786	2	UACA	15	70959543	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2493425	70959543	31571849	470	56653										
CSPG4	0	genome.wustl.edu	37	chr15	75980264	75980264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcgtcagcaaagcccgagtCagcatcgctgaaggccacgt	13	13	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	75980264	75980264	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.3142	p.D1048N	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	16	0	0	6	7	53.85	-	-	-	T	75980264	C	T	75980264	3	4	658	1	0	0	0	0	1	0	0	0	3992	826	29	2	3858	2	CSPG4	15	75980264	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5020721	75980264	26551128	471	56654										
WDR93	0	genome.wustl.edu	37	chr15	90265345	90265345	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttccagtttacataatgaaGatcaaaccacctaagcctgt	5	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	90265345	90265345	G	A	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	silent	c.855	p.K285	0.999	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	61	0	0	61	18	22.78	-	-	-	A	90265345	G	A	90265345	2	1	658	1	0	0	0	0	0	0	0	1	17437	933	33	2		2	WDR93	15	90265345	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	14285081	90265345	12266047	472	56655										
MEF2A	0	genome.wustl.edu	37	chr15	100185769	100185769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccttttttattgtttaggtcActtttacaaagagaaagttt	6	5	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	15	100185769	100185769	A	T	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	missense	c.58	p.T20S	1.000	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	25	0	0	29	6	17.14	-	-	-	T	100185769	A	T	100185769	3	4	658	1	0	0	0	0	1	0	0	0	9526	159	6	5	64	5	MEF2A	15	100185769	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	9920424	100185769	2345623	473	56656										
RAB11FIP3	0	genome.wustl.edu	37	chr16	511410	511410	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttggcaattacaggtgaagGacttaactaagtacttggat	10	5	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	511410	511410	G	T	SNP	RAB11FIP3	ENST00000457159	human	ensembl	69_37n	1	known	missense	c.721	p.D241Y	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP3	HGNC	ENSG00000090565	25	0	0	53	9	14.52	-	-	-	T	511410	G	T	511410	3	4	658	1	0	0	0	0	1	0	0	0	12978	1174	41	2	727	2	RAB11FIP3	16	511410	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		511410	89843343	474	56657										
TPSB2	0	genome.wustl.edu	37	chr16	1278690	1278690	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtggtggatccagtccaagTagtaggtgacacgggtgtag	16	6	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	1278690	1278690	T	A	SNP	TPSB2	ENST00000430512	human	ensembl	69_37n	-1	known	missense	c.785	p.Y262F	0.242	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSB2	HGNC	ENSG00000197253	56	0	0	43	6	12	-	-	-	A	1278690	T	A	1278690	3	1	658	1	0	0	0	0	1	0	0	0	16520	1638	57	5	43	5	TPSB2	16	1278690	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	767280	1278690	89076063	475	56658										
TELO2	0	genome.wustl.edu	37	chr16	1544312	1544312	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gcaccctcagaggttcgactCgccgtccgggaagccattca	11	15	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	1544312	1544312	C	A	SNP	TELO2	ENST00000262319	human	ensembl	69_37n	1	known	silent	c.30	p.L10	0.000	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	17	0	0	9	9	50	-	-	-	A	1544312	C	A	1544312	2	1	658	1	0	0	0	0	0	0	0	1	15852	871	31	3		3	TELO2	16	1544312	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	265622	1544312	88810441	476	56659										
TBL3	0	genome.wustl.edu	37	chr16	2025431	2025431	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctgtactttctgacagctgGcgaccaaggtgtgttgggcc	14	10	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	2025431	2025431	G	C	SNP	TBL3	ENST00000568546	human	ensembl	69_37n	1	known	missense	c.797	p.G266A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp13,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL3	HGNC	ENSG00000183751	47	0	0	41	12	22.64	-	-	-	C	2025431	G	C	2025431	3	2	658	1	0	0	0	0	1	0	0	0	15738	1203	42	4	831	4	TBL3	16	2025431	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	481119	2025431	88329322	477	56660										
PRSS27	0	genome.wustl.edu	37	chr16	2762622	2762622	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctcctggccccgggggtctCacttctggccgcccaacctc	11	19	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	2762622	2762622	C	T	SNP	PRSS27	ENST00000302641	human	ensembl	69_37n	-1	known	silent	c.872	p.*291	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS27	HGNC	ENSG00000172382	19	0	0	16	12	42.86	-	-	-	T	2762622	C	T	2762622	2	4	658	1	0	0	0	0	0	0	0	1	12701	837	29	2		2	PRSS27	16	2762622	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	737191	2762622	87592131	478	56661										
PRSS27	0	genome.wustl.edu	37	chr16	2762726	2762726	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgtagacacctgggcggttCtggcgggcacagccctcacc	13	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	2762726	2762726	C	G	SNP	PRSS27	ENST00000302641	human	ensembl	69_37n	-1	known	missense	c.768	p.Q256H	0.001	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS27	HGNC	ENSG00000172382	16	0	0	14	15	51.72	-	-	-	G	2762726	C	G	2762726	3	3	658	1	0	0	0	0	1	0	0	0	12701	912	32	2	108	2	PRSS27	16	2762726	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	104	2762726	87592027	479	56662										
CREBBP	0	genome.wustl.edu	37	chr16	3900736	3900736	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctccctggctcagagggctCttgcccatggcactgaggct	12	14	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	3900736	3900736	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	silent	c.360	p.K120	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	9	0	0	13	13	50	-	-	-	T	3900736	C	T	3900736	2	4	658	1	0	0	0	0	0	0	0	1	3891	912	32	2		2	CREBBP	16	3900736	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1138010	3900736	86454017	480	56663										
ERCC4	0	genome.wustl.edu	37	chr16	14026115	14026115	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtaaaaaagaaaaaatatctGaaaaaatggaaattaaagaa	6	1	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	14026115	14026115	G	T	SNP	ERCC4	ENST00000311895	human	ensembl	69_37n	1	known	nonsense	c.1075	p.E359*	1.000	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595	47	0	0	68	17	19.77	-	-	-	T	14026115	G	T	14026115	4	4	658	1	0	0	0	0	0	1	0	0	5252	1291	45	2	1097	2	ERCC4	16	14026115	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	10125379	14026115	76328638	481	56664										
NOMO1	0	genome.wustl.edu	37	chr16	14968961	14968961	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtgcaggagctgcggagggAgcagcagctggctgagatcg	19	8	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	14968961	14968961	A	G	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.2123	p.E708G	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	105	0	0	117	29	19.86	-	-	-	G	14968961	A	G	14968961	3	3	658	1	0	0	0	0	1	0	0	0	10603	304	11	5	2197	5	NOMO1	16	14968961	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	942846	14968961	75385792	482	56665										
CDR2	0	genome.wustl.edu	37	chr16	22358682	22358682	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtctcctcgtggcccttcacGatgtcactccctgccaagct	8	17	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	22358682	22358682	G	A	SNP	CDR2	ENST00000268383	human	ensembl	69_37n	-1	known	silent	c.969	p.I323	0.064	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743	42	0	0	23	21	46.67	-	-	-	A	22358682	G	A	22358682	2	1	658	1	0	0	0	0	0	0	0	1	3201	1048	37	1		1	CDR2	16	22358682	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7389721	22358682	67996071	483	56666										
PALB2	0	genome.wustl.edu	37	chr16	23647167	23647167	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggtcttcttaggaatgtatCaacacctttttctggttggg	10	7	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	23647167	23647167	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.700	p.D234N	0.001	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	44	0	0	86	12	12.24	-	-	-	T	23647167	C	T	23647167	3	4	658	1	0	0	0	0	1	0	0	0	11479	826	29	2	2900	2	PALB2	16	23647167	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1288485	23647167	66707586	484	56667										
KIAA0556	0	genome.wustl.edu	37	chr16	27761291	27761291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaatattcagttccaagggtGaaccggtgcagatttcaaac	9	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	27761291	27761291	G	A	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.3010	p.E1004K	0.819	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	13	0	0	8	17	68	-	-	-	A	27761291	G	A	27761291	3	1	658	1	0	0	0	0	1	0	0	0	8235	1291	45	2	3072	2	KIAA0556	16	27761291	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4114124	27761291	62593462	485	56668										
XPO6	0	genome.wustl.edu	37	chr16	28123292	28123292	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tttggccacggaagcagcaaGatgttagagagggctcggca	15	8	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	28123292	28123292	G	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.2187	p.I729M	0.999	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	45	0	0	38	13	25.49	-	-	-	C	28123292	G	C	28123292	3	2	658	1	0	0	0	0	1	0	0	0	17545	932	33	2	1222	2	XPO6	16	28123292	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	362001	28123292	62231461	486	56669										
ZNF48	0	genome.wustl.edu	37	chr16	30409375	30409375	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acggcagctacccagggaccGaaggcccaggacaagccata	12	14	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30409375	30409375	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	silent	c.804	p.P268	0.289	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	37	0	0	44	11	20	-	-	-	A	30409375	G	A	30409375	2	1	658	1	0	0	0	0	0	0	0	1	18030	1045	37	1		1	ZNF48	16	30409375	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2286083	30409375	59945378	487	56670										
ITGAL	0	genome.wustl.edu	37	chr16	30485581	30485581	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttctccccaccgcgcgccggGaggcactttggataccgcgt	12	16	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30485581	30485581	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	silent	c.126	p.G42	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	22	0	0	12	17	58.62	-	-	-	A	30485581	G	A	30485581	2	1	658	1	0	0	0	0	0	0	0	1	7940	1161	41	2		2	ITGAL	16	30485581	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	76206	30485581	59869172	488	56671										
SRCAP	0	genome.wustl.edu	37	chr16	30744708	30744708	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggatgtattggagcagtttCtcacctaccatggccatctc	9	11	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30744708	30744708	C	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.6235	p.L2079I	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	36	0	0	68	10	12.82	-	-	-	A	30744708	C	A	30744708	3	1	658	1	0	0	0	0	1	0	0	0	15226	913	32	2	6337	2	SRCAP	16	30744708	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	259127	30744708	59610045	489	56672										
C16orf93	0	genome.wustl.edu	37	chr16	30771679	30771679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccagtgagaagccctgctggCggcagaaaatgagcgcgtgg	16	10	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30771679	30771679	C	T	SNP	C16orf93	ENST00000543610	human	ensembl	69_37n	-1	known	missense	c.395	p.R132H	1.000	NULL	NULL	-	no_errors	C16orf93	HGNC	ENSG00000196118	35	0	0	61	15	19.23	-	-	-	T	30771679	C	T	30771679	3	4	658	1	0	0	0	0	1	0	0	0	1859	768	27	1	624	1	C16orf93	16	30771679	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	26971	30771679	59583074	490	56673										
RNF40	0	genome.wustl.edu	37	chr16	30778098	30778098	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcagaagaagctacgcacaGaggtcattcagctggaggac	13	9	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30778098	30778098	G	C	SNP	RNF40	ENST00000324685	human	ensembl	69_37n	1	known	missense	c.1330	p.E444Q	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549	21	0	0	28	16	36.36	-	-	-	C	30778098	G	C	30778098	3	2	658	1	0	0	0	0	1	0	0	0	13579	943	33	2	1368	2	RNF40	16	30778098	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6419	30778098	59576655	491	56674										
SETD1A	0	genome.wustl.edu	37	chr16	30977153	30977153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgagtaccccccacctcctCcaccacccccgcacatctat	3	23	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	30977153	30977153	C	G	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	missense	c.1951	p.P651A	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	10	0	0	3	4	57.14	-	-	-	G	30977153	C	G	30977153	3	3	658	1	0	0	0	0	1	0	0	0	14218	855	30	2	1977	2	SETD1A	16	30977153	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	199055	30977153	59377600	492	56675										
STX4	0	genome.wustl.edu	37	chr16	31045418	31045418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacggctggggagcccggacGaggagttcttccacaaggta	15	11	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	31045418	31045418	G	A	SNP	STX4	ENST00000313843	human	ensembl	69_37n	1	known	missense	c.115	p.E39K	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX4	HGNC	ENSG00000103496	22	0	0	15	21	58.33	-	-	-	A	31045418	G	A	31045418	3	1	658	1	0	0	0	0	1	0	0	0	15438	1059	37	1	121	1	STX4	16	31045418	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	68265	31045418	59309335	493	56676										
ABCC12	0	genome.wustl.edu	37	chr16	48145388	48145388	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcctgtttcagattcttttCcttcatctttctcatttcct	3	12	5	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	48145388	48145388	C	G	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.2240	p.G747A	0.860	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	83	0	0	81	34	29.31	-	-	-	G	48145388	C	G	48145388	3	3	658	1	0	0	0	0	1	0	0	0	52	855	30	2	1895	2	ABCC12	16	48145388	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	17099970	48145388	42209365	494	56677										
AKTIP	0	genome.wustl.edu	37	chr16	53526408	53526408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggccagcaacatgaacactTttattgtgctgttcttcagg	9	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	53526408	53526408	T	C	SNP	AKTIP	ENST00000300245	human	ensembl	69_37n	-1	known	silent	c.798	p.K266	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	AKTIP	HGNC	ENSG00000166971	34	0	0	33	10	23.26	-	-	-	C	53526408	T	C	53526408	2	2	658	1	0	0	0	0	0	0	0	1	482	1838	64	5		5	AKTIP	16	53526408	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	5381020	53526408	36828345	495	56678										
MT4	0	genome.wustl.edu	37	chr16	56601663	56601663	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggctctgtcctgtcttctagGaggaatctgcatgtgtggag	14	8	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	56601663	56601663	G	T	SNP	MT4	ENST00000219162	human	ensembl	69_37n	1	known	missense	c.32	p.G11V	0.993	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT4	HGNC	ENSG00000102891	40	0	0	25	4	13.79	-	-	-	T	56601663	G	T	56601663	3	4	658	1	0	0	0	0	1	0	0	0	9979	1188	41	2	38	2	MT4	16	56601663	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3075255	56601663	33753090	496	56679										
MT1G	0	genome.wustl.edu	37	chr16	56700792	56700792	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagcagggctgtcccgacatCaggcgcagcagctgcacttc	13	14	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	56700792	56700792	C	G	SNP	MT1G	ENST00000379811	human	ensembl	69_37n	-1	known	nonstop	c.188	p.*63S	0.997	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1G	HGNC	ENSG00000125144	62	0	0	60	21	25.93	-	-	-	G	56700792	C	G	56700792	4	3	658	1	0	0	0	0	0	0	0	0	9973	837	29	2	4	2	MT1G	16	56700792	Nonstop_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	99129	56700792	33653961	497	56680										
E2F4	0	genome.wustl.edu	37	chr16	67228646	67228646	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agagtgtgagtggtcccattGaggttctgctggtgaacaag	15	6	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	67228646	67228646	G	T	SNP	E2F4	ENST00000379378	human	ensembl	69_37n	1	known	nonsense	c.571	p.E191*	0.993	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	44	0	0	28	14	33.33	-	-	-	T	67228646	G	T	67228646	4	4	658	1	0	0	0	0	0	1	0	0	4904	1291	45	2	593	2	E2F4	16	67228646	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	10527854	67228646	23126107	498	56681										
AARS	0	genome.wustl.edu	37	chr16	70298986	70298986	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgaggtcttccccaccagctCccttgccctgtgatttcagc	8	16	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	70298986	70298986	C	G	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1367	p.G456A	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-synth_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	44	0	0	44	19	30.16	-	-	-	G	70298986	C	G	70298986	3	3	658	1	0	0	0	0	1	0	0	0	19	855	30	2	1583	2	AARS	16	70298986	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3070340	70298986	20055767	499	56682										
DDX19A	0	genome.wustl.edu	37	chr16	70400064	70400064	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggactggtgctccaagctCaagttcattgatcccaagaa	9	11	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	70400064	70400064	C	G	SNP	DDX19A	ENST00000575878	human	ensembl	69_37n	1	novel	nonsense	c.434	p.S145*	0.999	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX19A	HGNC	ENSG00000168872	69	0	0	52	17	23.94	-	-	-	G	70400064	C	G	70400064	4	3	658	1	0	0	0	0	0	1	0	0	4377	813	29	2	711	2	DDX19A	16	70400064	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	101078	70400064	19954689	500	56683										
FUK	0	genome.wustl.edu	37	chr16	70506491	70506491	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgccctggagtgaattcttCaagaggacaggtgttcggta	14	7	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	70506491	70506491	C	T	SNP	FUK	ENST00000378912	human	ensembl	69_37n	1	known	silent	c.1485	p.F495	1.000	pfam_Fucokinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	27	0	0	34	8	18.18	-	-	-	T	70506491	C	T	70506491	2	4	658	1	0	0	0	0	0	0	0	1	6145	825	29	2		2	FUK	16	70506491	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	106427	70506491	19848262	501	56684										
RFWD3	0	genome.wustl.edu	37	chr16	74695104	74695104	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttctcccaagacctccacttCtgtcaggtcaacagacagtt	6	14	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	74695104	74695104	C	G	SNP	RFWD3	ENST00000361070	human	ensembl	69_37n	-1	known	missense	c.244	p.E82Q	0.371	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING	-	no_errors	RFWD3	HGNC	ENSG00000168411	43	0	0	30	8	21.05	-	-	-	G	74695104	C	G	74695104	3	3	658	1	0	0	0	0	1	0	0	0	13344	922	32	2	2128	2	RFWD3	16	74695104	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4188613	74695104	15659649	502	56685										
MLYCD	0	genome.wustl.edu	37	chr16	83948687	83948687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atgaactctttacagattcgGaatgtaaggaaatctcggag	10	6	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	83948687	83948687	G	A	SNP	MLYCD	ENST00000262430	human	ensembl	69_37n	1	known	missense	c.1075	p.E359K	0.938	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150	59	0	0	48	10	17.24	-	-	-	A	83948687	G	A	83948687	3	1	658	1	0	0	0	0	1	0	0	0	9709	1175	41	2	1093	2	MLYCD	16	83948687	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9253583	83948687	6406066	503	56686										
COTL1	0	genome.wustl.edu	37	chr16	84623740	84623740	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctccttcaccagggtcttgtCcgtcccggttttggcgcgct	11	15	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	84623740	84623740	C	A	SNP	COTL1	ENST00000262428	human	ensembl	69_37n	-1	known	missense	c.289	p.D97Y	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	COTL1	HGNC	ENSG00000103187	19	0	0	14	8	36.36	-	-	-	A	84623740	C	A	84623740	3	1	658	1	0	0	0	0	1	0	0	0	3791	855	30	2	147	2	COTL1	16	84623740	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	675053	84623740	5731013	504	56687										
GINS2	0	genome.wustl.edu	37	chr16	85715277	85715277	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgttcatgatccctcatcttCtccaacttttctgaaattta	3	12	5	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	85715277	85715277	C	T	SNP	GINS2	ENST00000253462	human	ensembl	69_37n	-1	known	silent	c.216	p.E72	1.000	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	-	no_errors	GINS2	HGNC	ENSG00000131153	92	0	0	79	20	20	-	-	-	T	85715277	C	T	85715277	2	4	658	1	0	0	0	0	0	0	0	1	6440	912	32	2		2	GINS2	16	85715277	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1091537	85715277	4639476	505	56688										
FANCA	0	genome.wustl.edu	37	chr16	89838157	89838157	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgatatctcaacgctgctgtCatcctcattgtggcccagga	9	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	16	89838157	89838157	C	A	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.2080	p.D694Y	0.001	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	67	0	0	90	15	14.29	-	-	-	A	89838157	C	A	89838157	3	1	658	1	0	0	0	0	1	0	0	0	5708	826	29	2	2371	2	FANCA	16	89838157	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4122880	89838157	516596	506	56689										
TSR1	0	genome.wustl.edu	37	chr17	2235463	2235463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgatagacttgttgactaacCgaattcgagcagccacatca	8	10	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	2235463	2235463	C	T	SNP	TSR1	ENST00000301364	human	ensembl	69_37n	-1	known	missense	c.1496	p.R499Q	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_elong_init/rib_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721	52	0	0	18	36	66.67	-	-	-	T	2235463	C	T	2235463	3	4	658	1	0	0	0	0	1	0	0	0	16760	666	23	1	950	1	TSR1	17	2235463	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		2235463	78959747	507	56690										
SGSM2	0	genome.wustl.edu	37	chr17	2280275	2280275	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagctggcctacagctgcttCagccacctcatgaagaggat	10	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	2280275	2280275	C	T	SNP	SGSM2	ENST00000268989	human	ensembl	69_37n	1	known	silent	c.2715	p.F905	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	19	0	0	20	19	48.72	-	-	-	T	2280275	C	T	2280275	2	4	658	1	0	0	0	0	0	0	0	1	14311	825	29	2		2	SGSM2	17	2280275	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	44812	2280275	78914935	508	56691										
PER1	0	genome.wustl.edu	37	chr17	8046116	8046116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgagcaggtcactggagccgGaaagtgcgtcctgattggag	16	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	8046116	8046116	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.3110	p.S1037F	0.985	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	18	0	0	15	14	48.28	-	-	-	A	8046116	G	A	8046116	3	1	658	1	0	0	0	0	1	0	0	0	11802	1174	41	2	778	2	PER1	17	8046116	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5765841	8046116	73149094	509	56692										
PER1	0	genome.wustl.edu	37	chr17	8047086	8047086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtggcacgggtgaggggtgtGagacatagcagggcgcttca	19	7	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	8047086	8047086	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.2570	p.S857L	0.114	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	22	0	0	14	15	51.72	-	-	-	A	8047086	G	A	8047086	3	1	658	1	0	0	0	0	1	0	0	0	11802	1294	45	2	1322	2	PER1	17	8047086	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	970	8047086	73148124	510	56693										
PER1	0	genome.wustl.edu	37	chr17	8049971	8049971	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagctggaggcttctttcctCtcggcctcctcagggaccaa	10	15	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	8049971	8049971	C	T	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	silent	c.1848	p.E616	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	31	0	0	10	19	65.52	-	-	-	T	8049971	C	T	8049971	2	4	658	1	0	0	0	0	0	0	0	1	11802	912	32	2		2	PER1	17	8049971	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2885	8049971	73145239	511	56694										
PER1	0	genome.wustl.edu	37	chr17	8053432	8053432	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctgagtccttgcccgggctGactgttcactgctgcggggc	14	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	8053432	8053432	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.386	p.S129L	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	62	0	0	30	29	47.54	-	-	-	A	8053432	G	A	8053432	3	1	658	1	0	0	0	0	1	0	0	0	11802	1294	45	2	3566	2	PER1	17	8053432	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3461	8053432	73141778	512	56695										
MYH10	0	genome.wustl.edu	37	chr17	8384677	8384677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggtgatctcgtccgccagctCatctctctcctgctcggcgt	10	16	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	8384677	8384677	C	G	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.5197	p.E1733Q	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	36	0	0	19	26	57.78	-	-	-	G	8384677	C	G	8384677	3	3	658	1	0	0	0	0	1	0	0	0	10102	835	29	2	820	2	MYH10	17	8384677	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	331245	8384677	72810533	513	56696										
MYH3	0	genome.wustl.edu	37	chr17	10539141	10539141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagttgggatactatgctttCtttttcttccagctgacgac	8	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	10539141	10539141	C	G	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	missense	c.3886	p.E1296Q	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	76	0	0	45	51	52.04	-	-	-	G	10539141	C	G	10539141	3	3	658	1	0	0	0	0	1	0	0	0	10108	922	32	2	1988	2	MYH3	17	10539141	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2154464	10539141	70656069	514	56697										
DNAH9	0	genome.wustl.edu	37	chr17	11511580	11511580	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagcaagtgaagggaaaaacTttgctgcctcttccagcagg	12	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	11511580	11511580	T	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.552	p.T184	0.006	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	11	0	0	20	5	20	-	-	-	G	11511580	T	G	11511580	2	3	658	1	0	0	0	0	0	0	0	1	4643	1596	56	5		5	DNAH9	17	11511580	Silent	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	972439	11511580	69683630	515	56698										
TRAF4	0	genome.wustl.edu	37	chr17	27076323	27076323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgacaatctccttgagtggCcctttgcccgccgtgtcacc	9	15	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	27076323	27076323	C	T	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	missense	c.1141	p.P381S	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	22	0	0	34	8	19.05	-	-	-	T	27076323	C	T	27076323	3	4	658	1	0	0	0	0	1	0	0	0	16539	739	26	4	1167	4	TRAF4	17	27076323	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	15564743	27076323	54118887	516	56699										
TRAF4	0	genome.wustl.edu	37	chr17	27076377	27076377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcagagcgaccctgggctgGctaaaccacagcacgtcact	10	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	27076377	27076377	G	T	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	missense	c.1195	p.A399S	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	23	0	0	32	9	21.95	-	-	-	T	27076377	G	T	27076377	3	4	658	1	0	0	0	0	1	0	0	0	16539	1203	42	4	1221	4	TRAF4	17	27076377	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	54	27076377	54118833	517	56700										
ATAD5	0	genome.wustl.edu	37	chr17	29221087	29221087	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcttgcaagaaattaggaaGagatccaaccaacgatctta	7	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	29221087	29221087	G	T	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.5216	p.R1739I	0.987	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	38	0	0	45	27	37.5	-	-	-	T	29221087	G	T	29221087	3	4	658	1	0	0	0	0	1	0	0	0	1080	942	33	2	5298	2	ATAD5	17	29221087	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2144710	29221087	51974123	518	56701										
CCL2	0	genome.wustl.edu	37	chr17	32583746	32583746	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctccctccccacagcttcaAgaccattgtggccaaggaga	8	16	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	32583746	32583746	A	G	SNP	CCL2	ENST00000225831	human	ensembl	69_37n	1	known	missense	c.200	p.K67R	0.959	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL2	HGNC	ENSG00000108691	22	0	0	33	8	19.51	-	-	-	G	32583746	A	G	32583746	3	3	658	1	0	0	0	0	1	0	0	0	2918	72	3	5	210	5	CCL2	17	32583746	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	3362659	32583746	48611464	519	56702										
ACACA	0	genome.wustl.edu	37	chr17	35609904	35609904	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taacaatttgatcaggtattCaactgtagttcgaaagtcac	7	7	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	35609904	35609904	C	T	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.1885	p.E629K	0.978	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	78	0	0	98	19	16.24	-	-	-	T	35609904	C	T	35609904	3	4	658	1	0	0	0	0	1	0	0	0	106	835	29	2	5434	2	ACACA	17	35609904	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3026158	35609904	45585306	520	56703										
CNP	0	genome.wustl.edu	37	chr17	40120676	40120676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggttcctgaccaagaagagCtctgagaccctccgcaaagc	10	13	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	40120676	40120676	C	T	SNP	CNP	ENST00000393892	human	ensembl	69_37n	1	known	silent	c.594	p.S198	0.570	pfam_CNPase,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786	9	0	0	20	5	20	-	-	-	T	40120676	C	T	40120676	2	4	658	1	0	0	0	0	0	0	0	1	3656	796	28	4		4	CNP	17	40120676	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4510772	40120676	41074534	521	56704										
CNTNAP1	0	genome.wustl.edu	37	chr17	40838993	40838993	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ataacttccgcggctgcataGaaaacgtaatcttcaaccgc	7	12	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	40838993	40838993	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.973	p.E325K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	18	0	0	16	5	23.81	-	-	-	A	40838993	G	A	40838993	3	1	658	1	0	0	0	0	1	0	0	0	3676	943	33	2	999	2	CNTNAP1	17	40838993	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	718317	40838993	40356217	522	56705										
PPY	0	genome.wustl.edu	37	chr17	42018893	42018893	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcatactgggccatctgctCtggtgtggcattgtcccctg	12	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	42018893	42018893	C	A	SNP	PPY	ENST00000225992	human	ensembl	69_37n	-1	known	nonsense	c.130	p.E44*	0.935	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	PPY	HGNC	ENSG00000108849	59	0	0	59	12	16.9	-	-	-	A	42018893	C	A	42018893	4	1	658	1	0	0	0	0	0	1	0	0	12492	922	32	2	169	2	PPY	17	42018893	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1179900	42018893	39176317	523	56706										
NAGS	0	genome.wustl.edu	37	chr17	42085925	42085925	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tggtcaaccacgccaagggaCtgccagactcctttcacaag	9	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	42085925	42085925	C	G	SNP	NAGS	ENST00000293404	human	ensembl	69_37n	1	known	missense	c.1561	p.L521V	1.000	pirsf_GlcNAc_Synth_met,pfscan_GNAT_dom	pfam_DUF619,superfamily_Asp/Glu/Uridylate_kinase,superfamily_Acyl_CoA_acyltransferase,pirsf_GlcNAc_Synth_met,pfscan_GNAT_dom	-	no_errors	NAGS	HGNC	ENSG00000161653	46	0	0	42	10	19.23	-	-	-	G	42085925	C	G	42085925	3	3	658	1	0	0	0	0	1	0	0	0	10217	564	20	4	1587	4	NAGS	17	42085925	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	67032	42085925	39109285	524	56707										
KPNB1	0	genome.wustl.edu	37	chr17	45734247	45734247	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttgcagacattgggtacaGaaacttaccggcctagttct	9	9	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	45734247	45734247	G	A	SNP	KPNB1	ENST00000290158	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	68	0	0	89	22	19.64	-	-	-	A	45734247	G	A	45734247	3	1	658	1	0	0	0	0	1	0	0	0	8488	943	33	2	318	2	KPNB1	17	45734247	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3648322	45734247	35460963	525	56708										
MYCBPAP	0	genome.wustl.edu	37	chr17	48606547	48606547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acacccagagcctgcacagtGaggtgaagggaagcgcccag	14	12	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	48606547	48606547	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	69_37n	1	known	missense	c.2851	p.E951K	0.855	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	15	0	0	14	6	30	-	-	-	A	48606547	G	A	48606547	3	1	658	1	0	0	0	0	1	0	0	0	10091	1291	45	2	2921	2	MYCBPAP	17	48606547	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2872300	48606547	32588663	526	56709										
LUC7L3	0	genome.wustl.edu	37	chr17	48828109	48828109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttttgttactgtttgacagtGcagcgtaagtatgcacagat	10	6	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	48828109	48828109	G	A	SNP	LUC7L3	ENST00000513969	human	ensembl	69_37n	1	putative	missense	c.232	p.A78T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LUC7L3	HGNC	ENSG00000108848	9	0	0	19	5	20.83	-	-	-	A	48828109	G	A	48828109	3	1	658	1	0	0	0	0	1	0	0	0	9150	1334	46	4		4	LUC7L3	17	48828109	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	221562	48828109	32367101	527	56710										
USP32	0	genome.wustl.edu	37	chr17	58260613	58260613	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccagccgaactctgcgcatCcactttcttcacctcccttg	5	19	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	58260613	58260613	C	G	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4036	p.D1346H	0.017	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	58	0	0	43	25	36.76	-	-	-	G	58260613	C	G	58260613	3	3	658	1	0	0	0	0	1	0	0	0	17160	855	30	2	794	2	USP32	17	58260613	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9432504	58260613	22934597	528	56711										
BPTF	0	genome.wustl.edu	37	chr17	65905793	65905793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagagcctgattctgaaaaaGatgaggtaaaaggttcagat	11	4	2	6			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	65905793	65905793	G	C	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.3286	p.D1096H	0.622	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	35	0	0	43	6	12.24	-	-	-	C	65905793	G	C	65905793	3	2	658	1	0	0	0	0	1	0	0	0	1503	942	33	2	3332	2	BPTF	17	65905793	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7645180	65905793	15289417	529	56712										
TMEM104	0	genome.wustl.edu	37	chr17	72832298	72832298	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctggccttctacggcctcctCtccttcaccgccatcttctg	6	19	5	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	72832298	72832298	C	G	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	silent	c.963	p.L321	0.994	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	47	0	0	31	12	27.91	-	-	-	G	72832298	C	G	72832298	2	3	658	1	0	0	0	0	0	0	0	1	16113	900	32	2		2	TMEM104	17	72832298	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6926505	72832298	8362912	530	56713										
KIAA0195	0	genome.wustl.edu	37	chr17	73489641	73489641	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgcacagacttctgggacgGagctgacatctaccctctct	9	14	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	73489641	73489641	G	C	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.2156	p.G719A	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	29	0	0	29	21	42	-	-	-	C	73489641	G	C	73489641	3	2	658	1	0	0	0	0	1	0	0	0	8212	1174	41	2	2218	2	KIAA0195	17	73489641	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	657343	73489641	7705569	531	56714										
MRPL38	0	genome.wustl.edu	37	chr17	73895240	73895240	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccagccccatggcccttaccCagaagctggtggaagatgta	11	13	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	73895240	73895240	C	T	SNP	MRPL38	ENST00000309352	human	ensembl	69_37n	-1	known	silent	c.1005	p.L335	0.979	NULL	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	MRPL38	HGNC	ENSG00000204316	31	0	0	23	7	23.33	-	-	-	T	73895240	C	T	73895240	2	4	658	1	0	0	0	0	0	0	0	1	9873	608	21	4		4	MRPL38	17	73895240	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	405599	73895240	7299970	532	56715										
FBF1	0	genome.wustl.edu	37	chr17	73922234	73922234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagcgtggagcgagcagggcGaggcccttccctgcaggacg	17	13	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	73922234	73922234	G	A	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.703	p.R235C	1.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	11	0	0	14	5	26.32	-	-	-	A	73922234	G	A	73922234	3	1	658	1	0	0	0	0	1	0	0	0	5741	1058	37	1	2774	1	FBF1	17	73922234	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	26994	73922234	7272976	533	56716										
TNRC6C	0	genome.wustl.edu	37	chr17	76045561	76045561	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	taggtcaaaatatgggcaacCagaacgggaacccaacaggc	11	10	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	76045561	76045561	C	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.418	p.Q140K	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	17	0	0	26	11	29.73	-	-	-	A	76045561	C	A	76045561	3	1	658	1	0	0	0	0	1	0	0	0	16437	595	21	4	420	4	TNRC6C	17	76045561	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2123327	76045561	5149649	534	56717										
ENGASE	0	genome.wustl.edu	37	chr17	77076351	77076351	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagccttcctggccggggatGagcgctcgtaccaggcagtg	15	12	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	77076351	77076351	G	C	SNP	ENGASE	ENST00000579016	human	ensembl	69_37n	1	known	missense	c.628	p.E210Q	0.336	pfam_Glyco_hydro_85	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	23	0	0	28	7	20	-	-	-	C	77076351	G	C	77076351	3	2	658	1	0	0	0	0	1	0	0	0	5155	1291	45	2	646	2	ENGASE	17	77076351	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1030790	77076351	4118859	535	56718										
PCYT2	0	genome.wustl.edu	37	chr17	79864720	79864720	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcaaactggatgatcttctGagatgtctgcaggaactggg	13	7	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	79864720	79864720	G	C	SNP	PCYT2	ENST00000572995	human	ensembl	69_37n	-1	novel	nonsense	c.122	p.S41*	1.000	NULL	pfam_Cytidylyltransf,tigrfam_Cyt_trans-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PCYT2	HGNC	ENSG00000185813	23	0	0	25	9	26.47	-	-	-	C	79864720	G	C	79864720	4	2	658	1	0	0	0	0	0	1	0	0	11685	1299	45	2	605	2	PCYT2	17	79864720	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2788369	79864720	1330490	536	56719										
FASN	0	genome.wustl.edu	37	chr17	80051192	80051192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcagcaggacattgatgccCcccacgatggcggcagggca	13	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	80051192	80051192	C	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	silent	c.558	p.G186	0.007	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	18	0	0	27	6	18.18	-	-	-	T	80051192	C	T	80051192	2	4	658	1	0	0	0	0	0	0	0	1	5729	610	22	4		4	FASN	17	80051192	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	186472	80051192	1144018	537	56720										
FN3KRP	0	genome.wustl.edu	37	chr17	80680683	80680683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttacttttgcttgcaagggaGaggaggtgggcaggaggaac	17	5	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	80680683	80680683	G	A	SNP	FN3KRP	ENST00000269373	human	ensembl	69_37n	1	known	missense	c.389	p.R130K	0.990	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	85	0	0	91	36	28.35	-	-	-	A	80680683	G	A	80680683	3	1	658	1	0	0	0	0	1	0	0	0	6010	942	33	2	403	2	FN3KRP	17	80680683	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	629491	80680683	514527	538	56721										
TBCD	0	genome.wustl.edu	37	chr17	80714070	80714070	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acaaataccaggagcagcctCatctgttggacccgcacctt	8	14	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	17	80714070	80714070	C	G	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.214	p.H72D	1.000	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	85	0	0	79	48	37.8	-	-	-	G	80714070	C	G	80714070	3	3	658	1	0	0	0	0	1	0	0	0	15728	826	29	2	220	2	TBCD	17	80714070	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	33387	80714070	481140	539	56722										
IMPA2	0	genome.wustl.edu	37	chr18	12030413	12030413	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agatggcgatgctcatagctCaggccttacagacgattaac	10	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	12030413	12030413	C	T	SNP	IMPA2	ENST00000269159	human	ensembl	69_37n	1	known	nonsense	c.823	p.Q275*	1.000	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401	42	0	0	43	19	30.65	-	-	-	T	12030413	C	T	12030413	4	4	658	1	0	0	0	0	0	1	0	0	7777	827	29	2	853	2	IMPA2	18	12030413	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		12030413	66046835	540	56723										
POTEC	0	genome.wustl.edu	37	chr18	14542700	14542700	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctttctggggaccttacccCaccaggcagctctgtggagc	11	15	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	14542700	14542700	C	T	SNP	POTEC	ENST00000358970	human	ensembl	69_37n	-1	known	nonsense	c.446	p.W149*	0.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEC	HGNC	ENSG00000183206	126	0	0	168	25	12.95	-	-	-	T	14542700	C	T	14542700	4	4	658	1	0	0	0	0	0	1	0	0	12336	595	21	4	1226	4	POTEC	18	14542700	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2512287	14542700	63534548	541	56724										
C18orf34	0	genome.wustl.edu	37	chr18	30825244	30825244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacttctgctattttatcttCcatttcatctgtcttgtgtt	4	10	5	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	30825244	30825244	C	T	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	missense	c.1558	p.E520K	0.923	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	111	0	0	98	40	28.99	-	-	-	T	30825244	C	T	30825244	3	4	658	1	0	0	0	0	1	0	0	0	1919	864	30	2	1081	2	C18orf34	18	30825244	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	16282544	30825244	47252004	542	56725										
ZNF24	0	genome.wustl.edu	37	chr18	32917214	32917214	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttaaactttcacaacattCagaagtttttctgcattgtg	5	8	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	32917214	32917214	C	T	SNP	ZNF24	ENST00000261332	human	ensembl	69_37n	-1	known	silent	c.1089	p.L363	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF24	HGNC	ENSG00000172466	24	0	0	35	9	20	-	-	-	T	32917214	C	T	32917214	2	4	658	1	0	0	0	0	0	0	0	1	17888	813	29	2		2	ZNF24	18	32917214	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2091970	32917214	45160034	543	56726										
ZCCHC2	0	genome.wustl.edu	37	chr18	60225997	60225997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctctgaagcttcaagtcaaGaagaaggtaaaggtagattc	11	6	3	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	60225997	60225997	G	C	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.1486	p.E496Q	1.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	30	0	0	17	13	43.33	-	-	-	C	60225997	G	C	60225997	3	2	658	1	0	0	0	0	1	0	0	0	17683	943	33	2	1512	2	ZCCHC2	18	60225997	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	27308783	60225997	17851251	544	56727										
TMX3	0	genome.wustl.edu	37	chr18	66344394	66344394	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acccagtggcaggccaaagaGaaagcagcccatcagtggtg	13	11	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	18	66344394	66344394	G	A	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	missense	c.1141	p.L381F	1.000	NULL	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	60	0	0	37	22	37.29	-	-	-	A	66344394	G	A	66344394	3	1	658	1	0	0	0	0	1	0	0	0	16363	942	33	2	227	2	TMX3	18	66344394	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6118397	66344394	11732854	545	56728										
SHC2	0	genome.wustl.edu	37	chr19	436390	436390	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggggcctcacctctctggttGatggggtccttggcgacgta	15	11	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	436390	436390	G	C	SNP	SHC2	ENST00000264554	human	ensembl	69_37n	-1	known	missense	c.816	p.I272M	0.967	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC2	HGNC	ENSG00000129946	11	0	0	4	8	66.67	-	-	-	C	436390	G	C	436390	3	2	658	1	0	0	0	0	1	0	0	0	14360	1280	45	2	960	2	SHC2	19	436390	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		436390	58692593	546	56729										
ANGPTL4	0	genome.wustl.edu	37	chr19	8430846	8430846	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acccctccccagacacaactCaaggctcagaacagcaggat	7	16	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	8430846	8430846	C	G	SNP	ANGPTL4	ENST00000301455	human	ensembl	69_37n	1	known	silent	c.327	p.L109	0.850	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL4	HGNC	ENSG00000167772	45	0	0	23	21	47.73	-	-	-	G	8430846	C	G	8430846	2	3	658	1	0	0	0	0	0	0	0	1	616	813	29	2		2	ANGPTL4	19	8430846	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	7994456	8430846	50698137	547	56730										
ZNF441	0	genome.wustl.edu	37	chr19	11891225	11891225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cacaccatggagatggacctCgtatatgtaagttgtgtgga	12	7	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	11891225	11891225	C	T	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.586	p.R196C	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	53	0	0	38	34	47.22	-	-	-	T	11891225	C	T	11891225	3	4	658	1	0	0	0	0	1	0	0	0	18010	884	31	1	600	1	ZNF441	19	11891225	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3460379	11891225	47237758	548	56731										
NOTCH3	0	genome.wustl.edu	37	chr19	15291538	15291538	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcaagcttcggatgtcacaGaggcgtccgctccatccagg	13	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	15291538	15291538	G	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	silent	c.3096	p.L1032	0.966	pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	16	0	0	8	6	42.86	-	-	-	T	15291538	G	T	15291538	2	4	658	1	0	0	0	0	0	0	0	1	10622	929	33	2		2	NOTCH3	19	15291538	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	3400313	15291538	43837445	549	56732										
RASAL3	0	genome.wustl.edu	37	chr19	15563608	15563608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctcacgcagagcggccacctCgcactgcagctctgccaact	9	18	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	15563608	15563608	C	G	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.2689	p.E897Q	0.982	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	13	0	0	9	9	50	-	-	-	G	15563608	C	G	15563608	3	3	658	1	0	0	0	0	1	0	0	0	13148	893	31	3	358	3	RASAL3	19	15563608	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	272070	15563608	43565375	550	56733										
CPAMD8	0	genome.wustl.edu	37	chr19	17014404	17014404	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagccgtcccccttggcactCacaaacagccccgtggggag	11	17	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	17014404	17014404	C	G	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	nonstop	c.4610	p.*1537S	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	47	0	0	33	22	40	-	-	-	G	17014404	C	G	17014404	4	3	658	1	0	0	0	0	0	0	0	0	3825	813	29	2	1256	2	CPAMD8	19	17014404	Nonstop_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1450796	17014404	42114579	551	56734										
GPI	0	genome.wustl.edu	37	chr19	34890129	34890129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cagatcctcctggccaacttCttggcccagacagaggccct	9	16	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	34890129	34890129	C	G	SNP	GPI	ENST00000415930	human	ensembl	69_37n	1	known	missense	c.1320	p.F440L	1.000	pfam_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220	16	0	0	15	8	34.78	-	-	-	G	34890129	C	G	34890129	3	3	658	1	0	0	0	0	1	0	0	0	6661	912	32	2	1466	2	GPI	19	34890129	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	17875725	34890129	24238854	552	56735										
ZFP14	0	genome.wustl.edu	37	chr19	36831483	36831483	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctctcaccaatatgaatgctCtggtgtgaaataagctgtga	9	8	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	36831483	36831483	C	G	SNP	ZFP14	ENST00000270001	human	ensembl	69_37n	-1	known	missense	c.1245	p.Q415H	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP14	HGNC	ENSG00000142065	52	0	0	74	14	15.56	-	-	-	G	36831483	C	G	36831483	3	3	658	1	0	0	0	0	1	0	0	0	17735	912	32	2	360	2	ZFP14	19	36831483	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1941354	36831483	22297500	553	56736										
CATSPERG	0	genome.wustl.edu	37	chr19	38858194	38858194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agatttggtgacaggagactCcggcagtttccagggcaggt	15	8	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	38858194	38858194	C	T	SNP	CATSPERG	ENST00000409235	human	ensembl	69_37n	1	known	missense	c.2816	p.S939F	0.749	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	69	0	0	76	26	25.49	-	-	-	T	38858194	C	T	38858194	3	4	658	1	0	0	0	0	1	0	0	0	2717	855	30	2	2906	2	CATSPERG	19	38858194	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2026711	38858194	20270789	554	56737										
HNRNPL	0	genome.wustl.edu	37	chr19	39334666	39334666	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acctttgcgtattcgatcttCagagtgcaacagccagaata	8	10	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	39334666	39334666	C	T	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	silent	c.789	p.L263	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	47	0	0	54	11	16.92	-	-	-	T	39334666	C	T	39334666	2	4	658	1	0	0	0	0	0	0	0	1	7321	813	29	2		2	HNRNPL	19	39334666	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	476472	39334666	19794317	555	56738										
ZNF546	0	genome.wustl.edu	37	chr19	40521059	40521059	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaacagaacttactcagcatCacagaattcatactggtgaa	6	9	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	40521059	40521059	C	T	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	missense	c.1882	p.H628Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	29	0	0	37	7	15.91	-	-	-	T	40521059	C	T	40521059	3	4	658	1	0	0	0	0	1	0	0	0	18074	826	29	2	1900	2	ZNF546	19	40521059	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1186393	40521059	18607924	556	56739										
CYP2B6	0	genome.wustl.edu	37	chr19	41518202	41518202	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttggtcttcttttctgtacaGagagagtctacagggagatt	11	6	4	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	41518202	41518202	G	C	SNP	CYP2B6	ENST00000324071	human	ensembl	69_37n	1	known	splice_site	c.965-1	e7-1	1.000	-	-	-	no_errors	CYP2B6	HGNC	ENSG00000197408	19	0	0	39	10	20.41	-	-	-	C	41518202	G	C	41518202	5	2	658	1	0	0	0	0	0	0	1	0	4195	956	33	2	990	2	CYP2B6	19	41518202	Splice_Site	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	997143	41518202	17610781	557	56740										
TMEM145	0	genome.wustl.edu	37	chr19	42820839	42820839	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ctgctcttctcctccagcttCctcatcttcctgctgatgct	5	17	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	42820839	42820839	C	A	SNP	TMEM145	ENST00000301204	human	ensembl	69_37n	1	known	missense	c.753	p.F251L	1.000	pfam_Rhodopsin-like_GPCR_TM_domain	pfam_Rhodopsin-like_GPCR_TM_domain	-	no_errors	TMEM145	HGNC	ENSG00000167619	39	0	0	37	13	26	-	-	-	A	42820839	C	A	42820839	3	1	658	1	0	0	0	0	1	0	0	0	16154	854	30	2	791	2	TMEM145	19	42820839	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1302637	42820839	16308144	558	56741										
PSG9	0	genome.wustl.edu	37	chr19	43763217	43763217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcactcttaggttcacaggtGaaggctaagacatccttatt	8	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	43763217	43763217	G	A	SNP	PSG9	ENST00000418820	human	ensembl	69_37n	-1	putative	missense	c.461	p.S154L	0.001	NULL	pfam_Ig_V-set	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSG9	HGNC	ENSG00000183668	154	0	0	119	35	22.73	-	-	-	A	43763217	G	A	43763217	3	1	658	1	0	0	0	0	1	0	0	0	12742	1281	45	2	512	2	PSG9	19	43763217	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	942378	43763217	15365766	559	56742										
RSPH6A	0	genome.wustl.edu	37	chr19	46307901	46307901	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acaggtacttgttggcgcctGagcggctctcctccttgggg	14	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	46307901	46307901	G	C	SNP	RSPH6A	ENST00000221538	human	ensembl	69_37n	-1	known	nonsense	c.1262	p.S421*	0.050	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941	38	0	0	21	6	22.22	-	-	-	C	46307901	G	C	46307901	4	2	658	1	0	0	0	0	0	1	0	0	13793	1294	45	2	907	2	RSPH6A	19	46307901	Nonsense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2544684	46307901	12821082	560	56743										
ARHGAP35	0	genome.wustl.edu	37	chr19	47424131	47424131	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aaacttcagtgtgtctttctCgaccctgcttctgctggcat	8	12	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	47424131	47424131	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	silent	c.2199	p.L733	0.001	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	54	0	0	36	18	33.33	-	-	-	T	47424131	C	T	47424131	2	4	658	1	0	0	0	0	0	0	0	1	6846	871	31	1		1	ARHGAP35	19	47424131	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1116230	47424131	11704852	561	56744										
ZNF175	0	genome.wustl.edu	37	chr19	52091460	52091460	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatgtgggaaggcttttgtcCagaaatcagagttgattacc	11	6	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	52091460	52091460	C	A	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	missense	c.1876	p.Q626K	0.560	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	47	0	0	39	9	18.75	-	-	-	A	52091460	C	A	52091460	3	1	658	1	0	0	0	0	1	0	0	0	17841	595	21	4	1890	4	ZNF175	19	52091460	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4667329	52091460	7037523	562	56745										
ZNF613	0	genome.wustl.edu	37	chr19	52447977	52447978	+	Frame_Shift_Ins	INS	-	-	AC													0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctcaatgcacaccagaaaaINSttcatacaggagagaagtca							TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	52447977	52447978	-	AC	INS	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	frame_shift_ins	c.841_842	p.I281fs	0.614:0.553	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	39	0	0	39	7	15.22	-	-	-	AC	52447978	-	AC	52447977	7	5	658	1	0	1	1	0	0	0	0	0	18134	101	4	0	855	0	ZNF613	19	52447977	Frame_Shift_Ins	INS	-	TCGA-C8-A26Y-01A-11D-A16D-09	356517	52447977	6681006	563	56746										
MBOAT7	0	genome.wustl.edu	37	chr19	54677870	54677870	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggaagtggatacagaagtaGatggaggcccagtaccgaag	15	6	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	54677870	54677870	G	C	SNP	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	missense	c.1287	p.I429M	1.000	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	24	0	0	16	15	48.39	-	-	-	C	54677870	G	C	54677870	3	2	658	1	0	0	0	0	1	0	0	0	9429	932	33	2	135	2	MBOAT7	19	54677870	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2229893	54677870	4451113	564	56747										
LILRB4	0	genome.wustl.edu	37	chr19	55176603	55176603	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggccctgaggaccagcccctCatgcctacagggtcagtccc	11	17	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	55176603	55176603	C	G	SNP	LILRB4	ENST00000270452	human	ensembl	69_37n	1	known	silent	c.729	p.L243	0.003	NULL	pfam_Immunoglobulin,pfscan_Ig-like	-	no_errors	LILRB4	HGNC	ENSG00000186818	33	0	0	19	9	32.14	-	-	-	G	55176603	C	G	55176603	2	3	658	1	0	0	0	0	0	0	0	1	8848	813	29	2		2	LILRB4	19	55176603	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	498733	55176603	3952380	565	56748										
NLRP5	0	genome.wustl.edu	37	chr19	56538906	56538906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tagaggaatctccggggaacAaagaatccacttgctccttg	10	10	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	56538906	56538906	A	G	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	missense	c.1307	p.Q436R	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	22	0	0	18	14	43.75	-	-	-	G	56538906	A	G	56538906	3	3	658	1	0	0	0	0	1	0	0	0	10552	130	5	5	1333	5	NLRP5	19	56538906	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	1362303	56538906	2590077	566	56749										
ZNF583	0	genome.wustl.edu	37	chr19	56935300	56935300	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccaaattgcataccttgatCaacatcagagggttcatact	7	10	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	56935300	56935300	C	T	SNP	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	nonsense	c.1273	p.Q425*	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	35	0	0	32	30	47.62	-	-	-	T	56935300	C	T	56935300	4	4	658	1	0	0	0	0	0	1	0	0	18111	827	29	2	1287	2	ZNF583	19	56935300	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	396394	56935300	2193683	567	56750										
ZNF776	0	genome.wustl.edu	37	chr19	58265822	58265822	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagaatgtgggaaatgttttCatcaaaagggcagtctcatt	11	5	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	58265822	58265822	C	A	SNP	ZNF776	ENST00000317178	human	ensembl	69_37n	1	known	missense	c.1324	p.H442N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	56	0	0	84	14	14.29	-	-	-	A	58265822	C	A	58265822	3	1	658	1	0	0	0	0	1	0	0	0	18242	826	29	2	1334	2	ZNF776	19	58265822	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1330522	58265822	863161	568	56751										
ZNF417	0	genome.wustl.edu	37	chr19	58423525	58423525	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cactcctcctgggaaaagttCacagccacatcttcaaaggt	7	13	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	19	58423525	58423525	C	A	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	silent	c.66	p.V22	0.885	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	119	0	0	108	38	26.03	-	-	-	A	58423525	C	A	58423525	2	1	658	1	0	0	0	0	0	0	0	1	17990	813	29	2		2	ZNF417	19	58423525	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	157703	58423525	705458	569	56752										
PTPRA	0	genome.wustl.edu	37	chr20	2998481	2998481	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggaccaaaagaagaaacggtGaatgatttctggcggatgat	13	5	1	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	2998481	2998481	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	silent	c.996	p.V332	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	49	0	0	74	14	15.73	-	-	-	A	2998481	G	A	2998481	2	1	658	1	0	0	0	0	0	0	0	1	12878	1277	45	2		2	PTPRA	20	2998481	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		2998481	60027039	570	56753										
ITPA	0	genome.wustl.edu	37	chr20	3202556	3202556	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctttcagcctgatggatatGagcagacgtaaggagccctg	13	9	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	3202556	3202556	G	A	SNP	ITPA	ENST00000380113	human	ensembl	69_37n	1	known	missense	c.481	p.E161K	0.964	pfam_Ham1p-like,tigrfam_Ham1p-like	pfam_Ham1p-like,tigrfam_Ham1p-like	-	no_errors	ITPA	HGNC	ENSG00000125877	42	0	0	50	10	16.67	-	-	-	A	3202556	G	A	3202556	3	1	658	1	0	0	0	0	1	0	0	0	7969	1291	45	2	507	2	ITPA	20	3202556	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	204075	3202556	59822964	571	56754										
CHGB	0	genome.wustl.edu	37	chr20	5903756	5903756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcagcatggccagtttaggGgaaaagagggaccaccattc	13	9	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	5903756	5903756	G	A	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	silent	c.966	p.G322	0.969	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	24	0	0	20	13	39.39	-	-	-	A	5903756	G	A	5903756	2	1	658	1	0	0	0	0	0	0	0	1	3368	1219	43	4		4	CHGB	20	5903756	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2701200	5903756	57121764	572	56755										
NINL	0	genome.wustl.edu	37	chr20	25434275	25434275	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcggacttcgtgttcttttCaaactagagaggggaggaag	14	6	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	25434275	25434275	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.3961	p.E1321K	0.987	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	38	0	0	52	7	11.67	-	-	-	T	25434275	C	T	25434275	3	4	658	1	0	0	0	0	1	0	0	0	10492	835	29	2	191	2	NINL	20	25434275	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	19530519	25434275	37591245	573	56756										
TM9SF4	0	genome.wustl.edu	37	chr20	30733156	30733156	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tctcgctgggacacttacctGaccatgagtgacgtccagat	10	12	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	30733156	30733156	G	T	SNP	TM9SF4	ENST00000398022	human	ensembl	69_37n	1	known	silent	c.813	p.L271	0.930	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337	80	0	0	84	22	20.75	-	-	-	T	30733156	G	T	30733156	2	4	658	1	0	0	0	0	0	0	0	1	16075	1277	45	2		2	TM9SF4	20	30733156	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5298881	30733156	32292364	574	56757										
MAPRE1	0	genome.wustl.edu	37	chr20	31434459	31434459	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttactgttgaagacttggaGaaagagagggatttctactt	11	5	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	31434459	31434459	G	A	SNP	MAPRE1	ENST00000375571	human	ensembl	69_37n	1	known	silent	c.633	p.E211	1.000	pfam_EB1_C	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE1	HGNC	ENSG00000101367	67	0	0	50	14	21.88	-	-	-	A	31434459	G	A	31434459	2	1	658	1	0	0	0	0	0	0	0	1	9365	933	33	2		2	MAPRE1	20	31434459	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	701303	31434459	31591061	575	56758										
UQCC	0	genome.wustl.edu	37	chr20	33894574	33894574	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccagcccatgatcatctgaAaggatcccctggaacataca	8	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	33894574	33894574	A	T	SNP	UQCC	ENST00000453855	human	ensembl	69_37n	-1	known	missense	c.293	p.F98Y	1.000	NULL	NULL	-	no_start_codon	UQCC	HGNC	ENSG00000101019	28	0	0	44	8	15.38	-	-	-	T	33894574	A	T	33894574	3	4	658	1	0	0	0	0	1	0	0	0	17112	1	1	5	247	5	UQCC	20	33894574	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	2460115	33894574	29130946	576	56759										
CEP250	0	genome.wustl.edu	37	chr20	34057805	34057805	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctctgagagagacagtggaGatcctggtacatgatccttt	12	8	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	34057805	34057805	G	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.942	p.E314	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	21	0	0	36	8	18.18	-	-	-	A	34057805	G	A	34057805	2	1	658	1	0	0	0	0	0	0	0	1	3281	933	33	2		2	CEP250	20	34057805	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	163231	34057805	28967715	577	56760										
CEP250	0	genome.wustl.edu	37	chr20	34092674	34092674	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagcggctacaggcagccctGagacagacagaagccaggga	15	11	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	34092674	34092674	G	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.6477	p.L2159	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	21	0	0	20	6	23.08	-	-	-	A	34092674	G	A	34092674	2	1	658	1	0	0	0	0	0	0	0	1	3281	1277	45	2		2	CEP250	20	34092674	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	34869	34092674	28932846	578	56761										
NFS1	0	genome.wustl.edu	37	chr20	34262465	34262465	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcttagggtccccattcatCaccacatctggaaggctctt	8	13	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	34262465	34262465	C	T	SNP	NFS1	ENST00000374092	human	ensembl	69_37n	-1	known	silent	c.1023	p.V341	0.999	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	-	no_errors	NFS1	HGNC	ENSG00000244005	71	0	0	73	42	36.52	-	-	-	T	34262465	C	T	34262465	2	4	658	1	0	0	0	0	0	0	0	1	10457	813	29	2		2	NFS1	20	34262465	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	169791	34262465	28763055	579	56762										
KIAA1755	0	genome.wustl.edu	37	chr20	36841549	36841549	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgaggcgagggacctggctCtgcctggggggctgctgccg	20	11	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	36841549	36841549	C	G	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.3498	p.Q1166H	0.129	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	10	0	0	16	8	33.33	-	-	-	G	36841549	C	G	36841549	3	3	658	1	0	0	0	0	1	0	0	0	8309	912	32	2	108	2	KIAA1755	20	36841549	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2579084	36841549	26183971	580	56763										
RALGAPB	0	genome.wustl.edu	37	chr20	37198601	37198601	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccccttggacctgagacaaGagtttctgtagtctgggtgg	13	9	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	37198601	37198601	G	C	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	missense	c.4025	p.R1342T	1.000	pfscan_Rap_GAP	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	58	0	0	54	13	19.4	-	-	-	C	37198601	G	C	37198601	3	2	658	1	0	0	0	0	1	0	0	0	13098	942	33	2	4127	2	RALGAPB	20	37198601	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	357052	37198601	25826919	581	56764										
CHD6	0	genome.wustl.edu	37	chr20	40117094	40117094	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cataagctttagaccctccaGaagtttgcagttcctattct	6	11	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	40117094	40117094	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	silent	c.1831	p.L611	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	55	0	0	58	30	34.09	-	-	-	A	40117094	G	A	40117094	2	1	658	1	0	0	0	0	0	0	0	1	3358	933	33	2		2	CHD6	20	40117094	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2918493	40117094	22908426	582	56765										
WFDC8	0	genome.wustl.edu	37	chr20	44190777	44190777	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcttggtcagcattgcagaAgtccactccaaagcaaggga	10	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	44190777	44190777	A	C	SNP	WFDC8	ENST00000289953	human	ensembl	69_37n	-1	known	silent	c.108	p.T36	0.000	superfamily_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,prints_4-disulphide_core,pfscan_Prot_inh_Kunz-m	-	no_errors	WFDC8	HGNC	ENSG00000158901	48	0	0	51	13	20	-	-	-	C	44190777	A	C	44190777	2	2	658	1	0	0	0	0	0	0	0	1	17453	59	3	5		5	WFDC8	20	44190777	Silent	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	4073683	44190777	18834743	583	56766										
SLC12A5	0	genome.wustl.edu	37	chr20	44663663	44663663	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggaaaggagtatgatggcaaGaacatggccttgtttgaggt	15	4	0	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	44663663	44663663	G	C	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.198	p.K66N	1.000	prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	49	0	0	60	10	14.29	-	-	-	C	44663663	G	C	44663663	3	2	658	1	0	0	0	0	1	0	0	0	14475	933	33	2	260	2	SLC12A5	20	44663663	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	472886	44663663	18361857	584	56767										
SLC12A5	0	genome.wustl.edu	37	chr20	44681673	44681673	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccatgtttcctgggaaccctGagcgcttctctgagggcagc	12	13	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	44681673	44681673	G	C	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2524	p.E842Q	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	62	0	0	55	41	42.71	-	-	-	C	44681673	G	C	44681673	3	2	658	1	0	0	0	0	1	0	0	0	14475	1291	45	2	2654	2	SLC12A5	20	44681673	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	18010	44681673	18343847	585	56768										
ZNF334	0	genome.wustl.edu	37	chr20	45132914	45132914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttctccttgctccaatttGaaaatcacatctggtttgct	5	11	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	45132914	45132914	G	C	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.180	p.F60L	0.479	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	65	0	0	116	17	12.78	-	-	-	C	45132914	G	C	45132914	3	2	658	1	0	0	0	0	1	0	0	0	17947	1281	45	2	1870	2	ZNF334	20	45132914	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	451241	45132914	17892606	586	56769										
BCAS1	0	genome.wustl.edu	37	chr20	52674691	52674691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccgttcagagcagacgcgttGtcctgaaacagagcacgtgg	13	11	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	52674691	52674691	G	A	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	silent	c.75	p.D25	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	20	0	0	25	11	30.56	-	-	-	A	52674691	G	A	52674691	2	1	658	1	0	0	0	0	0	0	0	1	1354	1368	48	4		4	BCAS1	20	52674691	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	7541777	52674691	10350829	587	56770										
ARFRP1	0	genome.wustl.edu	37	chr20	62337709	62337709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcctggccagggagtcttacCttgtcccacaaagactgcag	10	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	62337709	62337709	C	T	SNP	ARFRP1	ENST00000324228	human	ensembl	69_37n	-1	known	silent	c.264	p.K88	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246	27	0	0	11	7	38.89	-	-	-	T	62337709	C	T	62337709	2	4	658	1	0	0	0	0	0	0	0	1	858	695	24	4		4	ARFRP1	20	62337709	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9663018	62337709	687811	588	56771										
MYT1	0	genome.wustl.edu	37	chr20	62839631	62839631	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggacacccactcccggaagtCaacagtcactgacgagtcgg	11	14	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	20	62839631	62839631	C	G	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	nonsense	c.1082	p.S361*	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	30	0	0	14	7	33.33	-	-	-	G	62839631	C	G	62839631	4	3	658	1	0	0	0	0	0	1	0	0	10178	838	29	2	1100	2	MYT1	20	62839631	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	501922	62839631	185889	589	56772										
ADAMTS1	0	genome.wustl.edu	37	chr21	28212280	28212280	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tccctccattctttgggactGggttgtcacattccctcatc	7	14	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	28212280	28212280	G	C	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	missense	c.1766	p.P589R	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	51	0	0	33	37	52.86	-	-	-	C	28212280	G	C	28212280	3	2	658	1	0	0	0	0	1	0	0	0	255	1348	47	4	1153	4	ADAMTS1	21	28212280	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09		28212280	19917615	590	56773										
KRTAP20-1	0	genome.wustl.edu	37	chr21	31988928	31988928	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttgctatggaagatattggtCatatggtttctactgaacaa	9	5	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	31988928	31988928	C	T	SNP	KRTAP20-1	ENST00000334664	human	ensembl	69_37n	1	known	missense	c.155	p.S52L	0.038	NULL	pfam_KRTAP	-	no_errors	KRTAP20-1	HGNC	ENSG00000244624	161	0	0	157	143	47.67	-	-	-	T	31988928	C	T	31988928	3	4	658	1	0	0	0	0	1	0	0	0	8589	838	29	2	157	2	KRTAP20-1	21	31988928	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3776648	31988928	16140967	591	56774										
GART	0	genome.wustl.edu	37	chr21	34897181	34897181	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttggcttcctcaagggctGatatgagattttcccggatg	11	9	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	34897181	34897181	G	A	SNP	GART	ENST00000381815	human	ensembl	69_37n	-1	known	missense	c.1193	p.S398L	0.004	pfam_PRibGlycinamide_synth_C-dom,superfamily_Rudment_hybrid_motif,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C,superfamily_PurM_N-like,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	42	0	0	58	45	43.69	-	-	-	A	34897181	G	A	34897181	3	1	658	1	0	0	0	0	1	0	0	0	6293	1294	45	2	1891	2	GART	21	34897181	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2908253	34897181	13232714	592	56775										
SON	0	genome.wustl.edu	37	chr21	34922706	34922706	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gccggggccacctgcgacctCcatgccggagttgcaggggc	16	15	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	34922706	34922706	C	G	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	missense	c.1169	p.S390C	0.997	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	31	0	0	20	19	48.72	-	-	-	G	34922706	C	G	34922706	3	3	658	1	0	0	0	0	1	0	0	0	15015	855	30	2	1179	2	SON	21	34922706	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	25525	34922706	13207189	593	56776										
CRYZL1	0	genome.wustl.edu	37	chr21	34969637	34969637	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cctccaacaccaagaagtgtGatgatatcatgtttatgtgg	9	8	1	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	34969637	34969637	G	A	SNP	CRYZL1	ENST00000440526	human	ensembl	69_37n	-1	putative	missense	c.577	p.H193Y	1.000	smart_PKS_ER	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRYZL1	HGNC	ENSG00000205758	88	0	0	89	103	53.65	-	-	-	A	34969637	G	A	34969637	3	1	658	1	0	0	0	0	1	0	0	0	3953	1280	45	2	318	2	CRYZL1	21	34969637	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	46931	34969637	13160258	594	56777										
TTC3	0	genome.wustl.edu	37	chr21	38538313	38538313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caattcttctagacaagtttCtgaggatgggcaacccaaag	9	9	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	38538313	38538313	C	G	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.3797	p.S1266C	0.007	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	31	0	0	43	12	21.82	-	-	-	G	38538313	C	G	38538313	3	3	658	1	0	0	0	0	1	0	0	0	16794	913	32	2	3923	2	TTC3	21	38538313	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3568676	38538313	9591582	595	56778										
UBASH3A	0	genome.wustl.edu	37	chr21	43862645	43862645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gggaagctggcaaaaccaccCcaaccctcatgagcctggaa	10	14	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	43862645	43862645	C	T	SNP	UBASH3A	ENST00000319294	human	ensembl	69_37n	1	known	missense	c.1570	p.P524S	0.248	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185	53	0	0	60	32	34.78	-	-	-	T	43862645	C	T	43862645	3	4	658	1	0	0	0	0	1	0	0	0	16936	623	22	4	1616	4	UBASH3A	21	43862645	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5324332	43862645	4267250	596	56779										
TRAPPC10	0	genome.wustl.edu	37	chr21	45514103	45514103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atacttatgaatttaaagtgGaaaatttttttgtaagtgat	7	1	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	45514103	45514103	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	69_37n	1	known	missense	c.3157	p.E1053K	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218	44	0	0	56	11	16.18	-	-	-	A	45514103	G	A	45514103	3	1	658	1	0	0	0	0	1	0	0	0	16553	1175	41	2	3235	2	TRAPPC10	21	45514103	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1651458	45514103	2615792	597	56780										
PCNT	0	genome.wustl.edu	37	chr21	47817975	47817975	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cgcgaggagttccagcaggaGattcagaggctggaggggca	18	8	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	21	47817975	47817975	G	C	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.4494	p.E1498D	1.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	53	0	0	59	35	36.84	-	-	-	C	47817975	G	C	47817975	3	2	658	1	0	0	0	0	1	0	0	0	11663	933	33	2	4584	2	PCNT	21	47817975	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2303872	47817975	311920	598	56781										
CLTCL1	0	genome.wustl.edu	37	chr22	19223377	19223377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtgatcaagtaaataacacCatgtttagctccaatctata	5	8	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	19223377	19223377	C	T	SNP	CLTCL1	ENST00000263200	human	ensembl	69_37n	-1	known	missense	c.811	p.G271S	1.000	superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	42	0	0	44	9	16.98	-	-	-	T	19223377	C	T	19223377	3	4	658	1	0	0	0	0	1	0	0	0	3597	594	21	4	4219	4	CLTCL1	22	19223377	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		19223377	32081189	599	56782										
PI4KA	0	genome.wustl.edu	37	chr22	21115652	21115652	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaacattacctggaagcgatCaggatctgttgaacgcagta	11	8	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	21115652	21115652	C	G	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.2731	p.D911H	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	47	0	0	44	27	38.03	-	-	-	G	21115652	C	G	21115652	3	3	658	1	0	0	0	0	1	0	0	0	11947	826	29	2	3709	2	PI4KA	22	21115652	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1892275	21115652	30188914	600	56783										
SGSM1	0	genome.wustl.edu	37	chr22	25315804	25315804	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcttggcagaactcgtctatGatgacgtcttcttggtctgg	11	9	5	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	25315804	25315804	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.3202	p.D1068N	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	34	0	0	37	10	20.83	-	-	-	A	25315804	G	A	25315804	3	1	658	1	0	0	0	0	1	0	0	0	14310	1290	45	2	3300	2	SGSM1	22	25315804	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	4200152	25315804	25988762	601	56784										
MYO18B	0	genome.wustl.edu	37	chr22	26423196	26423196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccacctgatggaggaacctcTaggcagtgacccattcagct	10	13	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	26423196	26423196	T	C	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.7256	p.L2419P	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	31	0	0	19	4	17.39	-	-	-	C	26423196	T	C	26423196	3	2	658	1	0	0	0	0	1	0	0	0	10138	1522	53	5	7422	5	MYO18B	22	26423196	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	1107392	26423196	24881370	602	56785										
ASPHD2	0	genome.wustl.edu	37	chr22	26829767	26829767	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgcgacaccaccgctgtcatCactgtggcctgcctcctggt	10	16	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	26829767	26829767	C	T	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	1	known	silent	c.186	p.I62	0.009	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	24	0	0	28	5	15.15	-	-	-	T	26829767	C	T	26829767	2	4	658	1	0	0	0	0	0	0	0	1	1059	816	29	2		2	ASPHD2	22	26829767	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	406571	26829767	24474799	603	56786										
MN1	0	genome.wustl.edu	37	chr22	28192899	28192899	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gagtccaggtcaatggtgctCatggcgctcttgaccgcctc	12	13	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	28192899	28192899	C	T	SNP	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	missense	c.3633	p.M1211I	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	23	0	0	22	4	15.38	-	-	-	T	28192899	C	T	28192899	3	4	658	1	0	0	0	0	1	0	0	0	9745	826	29	2	337	2	MN1	22	28192899	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1363132	28192899	23111667	604	56787										
THOC5	0	genome.wustl.edu	37	chr22	29932688	29932688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcaatctccttgagaatcttCtccttgttagataggcactc	6	11	4	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	29932688	29932688	C	G	SNP	THOC5	ENST00000397871	human	ensembl	69_37n	-1	known	missense	c.639	p.E213D	1.000	pfam_THO_Thoc5	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	68	0	0	52	26	33.33	-	-	-	G	29932688	C	G	29932688	3	3	658	1	0	0	0	0	1	0	0	0	15963	912	32	2	1468	2	THOC5	22	29932688	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1739789	29932688	21371878	605	56788										
APOBEC3B	0	genome.wustl.edu	37	chr22	39380199	39380199	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gaaaataaagaggggccgctCaaatctcctttgggacacag	11	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	39380199	39380199	C	G	SNP	APOBEC3B	ENST00000333467	human	ensembl	69_37n	1	known	nonsense	c.137	p.S46*	0.000	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750	35	0	0	22	39	63.93	-	-	-	G	39380199	C	G	39380199	4	3	658	1	0	0	0	0	0	1	0	0	792	838	29	2	143	2	APOBEC3B	22	39380199	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	9447511	39380199	11924367	606	56789										
APOBEC3F	0	genome.wustl.edu	37	chr22	39440105	39440105	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caggtgcccaggtctttcatCagagccccatttcaagtgct	9	13	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	39440105	39440105	C	T	SNP	APOBEC3F	ENST00000381565	human	ensembl	69_37n	1	putative	silent	c.189	p.I63	0.125	NULL	pfam_APOBEC_N	-	no_errors	APOBEC3F	HGNC	ENSG00000128394	69	0	0	54	34	38.2	-	-	-	T	39440105	C	T	39440105	2	4	658	1	0	0	0	0	0	0	0	1	795	816	29	2		2	APOBEC3F	22	39440105	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	59906	39440105	11864461	607	56790										
MKL1	0	genome.wustl.edu	37	chr22	40825709	40825709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aatcttctcattgaggtcatCggctagtctggctctcttca	8	11	6	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	40825709	40825709	C	T	SNP	MKL1	ENST00000355630	human	ensembl	69_37n	-1	known	missense	c.202	p.D68N	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL1	HGNC	ENSG00000196588	48	0	0	58	19	24.68	-	-	-	T	40825709	C	T	40825709	3	4	658	1	0	0	0	0	1	0	0	0	9672	884	31	1	2629	1	MKL1	22	40825709	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1385604	40825709	10478857	608	56791										
ZC3H7B	0	genome.wustl.edu	37	chr22	41726065	41726065	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttggtcaggagctggcccaGaaactggggctgcgagttcg	16	10	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	41726065	41726065	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	silent	c.483	p.Q161	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	34	0	0	31	18	36.73	-	-	-	A	41726065	G	A	41726065	2	1	658	1	0	0	0	0	0	0	0	1	17669	933	33	2		2	ZC3H7B	22	41726065	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	900356	41726065	9578501	609	56792										
SREBF2	0	genome.wustl.edu	37	chr22	42290843	42290843	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctgaccccattgcgcaggtCcaccaggccttctgcaagaa	10	15	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	42290843	42290843	C	T	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	1	known	silent	c.2397	p.V799	0.344	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	17	0	0	19	9	32.14	-	-	-	T	42290843	C	T	42290843	2	4	658	1	0	0	0	0	0	0	0	1	15233	842	30	2		2	SREBF2	22	42290843	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	564778	42290843	9013723	610	56793										
MCAT	0	genome.wustl.edu	37	chr22	43537171	43537171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caaactccttcctgtaccttCagcaaattccatggctccgg	6	15	1	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	43537171	43537171	C	T	SNP	MCAT	ENST00000290429	human	ensembl	69_37n	-1	known	missense	c.508	p.E170K	1.000	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,smart_PKS_acyl_transferase	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	-	no_errors	MCAT	HGNC	ENSG00000100294	78	0	0	35	14	28.57	-	-	-	T	43537171	C	T	43537171	3	4	658	1	0	0	0	0	1	0	0	0	9443	835	29	2	676	2	MCAT	22	43537171	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1246328	43537171	7767395	611	56794										
ARHGAP8	0	genome.wustl.edu	37	chr22	45182383	45182383	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gctgctgtgctgggtgcagtGaggaagaggccctcggtggt	19	8	0	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	45182383	45182383	G	A	SNP	ARHGAP8	ENST00000517296	human	ensembl	69_37n	1	known	silent	c.738	p.V246	0.000	NULL	pfam_RhoGAP_dom,pfam_HbrB,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP8	HGNC	ENSG00000241484	25	0	0	14	7	33.33	-	-	-	A	45182383	G	A	45182383	2	1	658	1	0	0	0	0	0	0	0	1	890	1277	45	2		2	ARHGAP8	22	45182383	Silent	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	1645212	45182383	6122183	612	56795										
PIM3	0	genome.wustl.edu	37	chr22	50356394	50356394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccaccgctaccacgggcgctCggccaccgtgtggtcgctgg	14	17	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	50356394	50356394	C	T	SNP	PIM3	ENST00000360612	human	ensembl	69_37n	1	known	missense	c.674	p.S225L	0.442	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PIM3	HGNC	ENSG00000198355	20	0	0	7	5	38.46	-	-	-	T	50356394	C	T	50356394	3	4	658	1	0	0	0	0	1	0	0	0	12003	893	31	1	692	1	PIM3	22	50356394	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	5174011	50356394	948172	613	56796										
TUBGCP6	0	genome.wustl.edu	37	chr22	50659211	50659211	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccccaagctgatgctggcatCagacacgtgtccatgggtgt	12	12	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	22	50659211	50659211	C	G	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	missense	c.3577	p.D1193H	0.029	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	32	0	0	12	6	33.33	-	-	-	G	50659211	C	G	50659211	3	3	658	1	0	0	0	0	1	0	0	0	16867	826	29	2	1922	2	TUBGCP6	22	50659211	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	302817	50659211	645355	614	56797										
MXRA5	0	genome.wustl.edu	37	chrX	3248093	3248093	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcccattccaaaaaccatctCatctcacaatcgcaggtcca	3	16	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	3248093	3248093	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.675	p.M225I	0.018	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	54	0	0	73	10	12.05	-	-	-	A	3248093	C	A	3248093	3	1	658	1	0	0	0	0	1	0	0	0	10075	826	29	2	7827	2	MXRA5	23	3248093	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09		3248093	152022467	615	56798										
STS	0	genome.wustl.edu	37	chrX	7223129	7223129	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgagctgagattggctaatgAtaccctcatctacttcacat	7	10	3	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	7223129	7223129	A	T	SNP	STS	ENST00000217961	human	ensembl	69_37n	1	known	missense	c.1001	p.D334V	0.050	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846	60	0	0	90	20	18.18	-	-	-	T	7223129	A	T	7223129	3	4	658	1	0	0	0	0	1	0	0	0	15423	333	12	5	1027	5	STS	23	7223129	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	3975036	7223129	148047431	616	56799										
FAM9A	0	genome.wustl.edu	37	chrX	8763373	8763373	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgctgctgcggcttctgcttCttctgcttcatcatctttct	7	13	7	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	8763373	8763373	C	A	SNP	FAM9A	ENST00000381003	human	ensembl	69_37n	-1	known	nonsense	c.577	p.E193*	0.005	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304	95	0	0	60	37	37.76	-	-	-	A	8763373	C	A	8763373	4	1	658	1	0	0	0	0	0	1	0	0	5705	922	32	2	433	2	FAM9A	23	8763373	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1540244	8763373	146507187	617	56800										
OFD1	0	genome.wustl.edu	37	chrX	13764545	13764545	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agtataagagagaaatagaaGagcaacttcgggcagaaatg	12	4	0	5			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	13764545	13764545	G	C	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.625	p.E209Q	0.644	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	35	0	0	35	14	28.57	-	-	-	C	13764545	G	C	13764545	3	2	658	1	0	0	0	0	1	0	0	0	10911	943	33	2	651	2	OFD1	23	13764545	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	5001172	13764545	141506015	618	56801										
PTCHD1	0	genome.wustl.edu	37	chrX	23410824	23410824	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccagccctttcacgaacattGaggcagccaggattttctgc	9	13	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	23410824	23410824	G	A	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.1189	p.E397K	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	44	0	0	35	14	28.57	-	-	-	A	23410824	G	A	23410824	3	1	658	1	0	0	0	0	1	0	0	0	12812	1291	45	2	1199	2	PTCHD1	23	23410824	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	9646279	23410824	131859736	619	56802										
MAGEB6	0	genome.wustl.edu	37	chrX	26212603	26212603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agaagaagtttgagaagaaaGagtccattttgaaggcagac	12	4	0	7			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	26212603	26212603	G	C	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.640	p.E214Q	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	31	0	0	29	15	34.09	-	-	-	C	26212603	G	C	26212603	3	2	658	1	0	0	0	0	1	0	0	0	9250	943	33	2	642	2	MAGEB6	23	26212603	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2801779	26212603	129057957	620	56803										
USP9X	0	genome.wustl.edu	37	chrX	41047365	41047365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagaaatcactaaaatttatGagaaggtaagaattatcaca	6	4	2	3			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	41047365	41047365	G	C	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.3805	p.E1269Q	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	34	0	0	67	24	26.37	-	-	-	C	41047365	G	C	41047365	3	2	658	1	0	0	0	0	1	0	0	0	17187	1291	45	2	3899	2	USP9X	23	41047365	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	14834762	41047365	114223195	621	56804										
CASK	0	genome.wustl.edu	37	chrX	41390311	41390311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccctgctcgtggatcttccgGatggtctccagttttgtccc	10	14	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	41390311	41390311	G	C	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.2469	p.I823M	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	46	0	0	68	41	36.94	-	-	-	C	41390311	G	C	41390311	3	2	658	1	0	0	0	0	1	0	0	0	2690	1164	41	2	323	2	CASK	23	41390311	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	342946	41390311	113880249	622	56805										
ELK1	0	genome.wustl.edu	37	chrX	47498367	47498367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gactggtgctcctgctccccGaggggggcgctgctgcccct	15	16	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	47498367	47498367	G	A	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	missense	c.581	p.S194L	0.483	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	15	0	0	15	6	28.57	-	-	-	A	47498367	G	A	47498367	3	1	658	1	0	0	0	0	1	0	0	0	5096	1059	37	1	721	1	ELK1	23	47498367	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	6108056	47498367	107772193	623	56806										
FAM123B	0	genome.wustl.edu	37	chrX	63412320	63412320	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtttctgggctatggggctCctctaggctactggcttcag	13	10	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	63412320	63412320	C	G	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.847	p.E283Q	0.139	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	32	0	0	36	16	30.77	-	-	-	G	63412320	C	G	63412320	3	3	658	1	0	0	0	0	1	0	0	0	5463	864	30	2	2564	2	FAM123B	23	63412320	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	15913953	63412320	91858240	624	56807										
TEX11	0	genome.wustl.edu	37	chrX	69898656	69898656	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aagagattattctcaaacctCaaaactactggcagcttgtc	6	10	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	69898656	69898656	C	T	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	missense	c.1285	p.E429K	0.999	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	90	0	0	126	28	18.18	-	-	-	T	69898656	C	T	69898656	3	4	658	1	0	0	0	0	1	0	0	0	15869	835	29	2	1601	2	TEX11	23	69898656	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6486336	69898656	85371904	625	56808										
FOXO4	0	genome.wustl.edu	37	chrX	70316624	70316624	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ccggccgggggcccccagccCggaatcctgggggctgtaac	16	16	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	70316624	70316624	C	T	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	silent	c.246	p.P82	0.450	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	18	0	0	19	15	44.12	-	-	-	T	70316624	C	T	70316624	2	4	658	1	0	0	0	0	0	0	0	1	6073	639	23	1		1	FOXO4	23	70316624	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	417968	70316624	84953936	626	56809										
MED12	0	genome.wustl.edu	37	chrX	70340925	70340925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggggctgtggttccacgataGggcccttgccccatgatgta	14	11	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	70340925	70340925	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.658	p.G220R	0.927	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	25	0	0	31	12	27.91	-	-	-	A	70340925	G	A	70340925	3	1	658	1	0	0	0	0	1	0	0	0	9499	1000	35	4	676	4	MED12	23	70340925	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	24301	70340925	84929635	627	56810										
NLGN3	0	genome.wustl.edu	37	chrX	70389243	70389243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgaaaccaagggtccgagatCattaccgggccactaaggtg	12	10	1	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	70389243	70389243	C	G	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.1843	p.H615D	1.000	pfam_CarbesteraseB,prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	26	0	0	23	13	36.11	-	-	-	G	70389243	C	G	70389243	3	3	658	1	0	0	0	0	1	0	0	0	10535	826	29	2	1869	2	NLGN3	23	70389243	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	48318	70389243	84881317	628	56811										
PCDH11X	0	genome.wustl.edu	37	chrX	91642764	91642764	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtgtcacatttcacctgccaGaaggctctcaggaaagcagc	10	12	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	91642764	91642764	G	C	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3175	p.E1059Q	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	53	0	0	63	28	30.77	-	-	-	C	91642764	G	C	91642764	3	2	658	1	0	0	0	0	1	0	0	0	11581	943	33	2	3315	2	PCDH11X	23	91642764	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	21253521	91642764	63627796	629	56812										
TAF7L	0	genome.wustl.edu	37	chrX	100538494	100538494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	atcaagcgttctcaggctttCaataacacaaggcaagtcaa	7	10	4	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	100538494	100538494	C	G	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.481	p.E161Q	0.968	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	54	0	0	61	35	36.08	-	-	-	G	100538494	C	G	100538494	3	3	658	1	0	0	0	0	1	0	0	0	15625	835	29	2	947	2	TAF7L	23	100538494	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	8895730	100538494	54732066	630	56813										
MID2	0	genome.wustl.edu	37	chrX	107167684	107167684	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	catcttcatcgttaaagccaTaaaccaagccggcagccgga	8	13	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	107167684	107167684	T	G	SNP	MID2	ENST00000262843	human	ensembl	69_37n	1	known	missense	c.1547	p.I516R	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561	29	0	0	50	11	18.03	-	-	-	G	107167684	T	G	107167684	3	3	658	1	0	0	0	0	1	0	0	0	9649	1406	49	5	1577	5	MID2	23	107167684	Missense_Mutation	SNP	T	TCGA-C8-A26Y-01A-11D-A16D-09	6629190	107167684	48102876	631	56814										
CAPN6	0	genome.wustl.edu	37	chrX	110491214	110491214	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	attttgggcatgtccagagtCagttccctagaacatcaaaa	8	9	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	110491214	110491214	C	T	SNP	CAPN6	ENST00000324068	human	ensembl	69_37n	-1	known	silent	c.1491	p.L497	1.000	superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_Ca-dep,superfamily_Calpain_domain_III,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_Ca-dep,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	46	0	0	56	13	18.84	-	-	-	T	110491214	C	T	110491214	2	4	658	1	0	0	0	0	0	0	0	1	2655	813	29	2		2	CAPN6	23	110491214	Silent	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3323530	110491214	44779346	632	56815										
CAPN6	0	genome.wustl.edu	37	chrX	110494949	110494949	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	accccaatcagtttcaacttCttgctcctcctgattgggag	7	13	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	110494949	110494949	C	T	SNP	CAPN6	ENST00000324068	human	ensembl	69_37n	-1	known	missense	c.721	p.E241K	0.934	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_Ca-dep,superfamily_Calpain_domain_III,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_Ca-dep,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	36	0	0	58	19	24.68	-	-	-	T	110494949	C	T	110494949	3	4	658	1	0	0	0	0	1	0	0	0	2655	922	32	2	1236	2	CAPN6	23	110494949	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	3735	110494949	44775611	633	56816										
TRPC5	0	genome.wustl.edu	37	chrX	111155634	111155634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggatgatctccagttccctgGagctccgagcttggtccagc	12	13	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	111155634	111155634	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.785	p.S262F	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	50	0	0	55	17	23.61	-	-	-	A	111155634	G	A	111155634	3	1	658	1	0	0	0	0	1	0	0	0	16678	1174	41	2	2172	2	TRPC5	23	111155634	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	660685	111155634	44114926	634	56817										
WDR44	0	genome.wustl.edu	37	chrX	117570782	117570782	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcactgccatagcttttcatCcaagagtaagtaactattta	5	9	2	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	117570782	117570782	C	G	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1969	p.P657A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	73	0	0	96	35	26.72	-	-	-	G	117570782	C	G	117570782	3	3	658	1	0	0	0	0	1	0	0	0	17393	855	30	2	2023	2	WDR44	23	117570782	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6415148	117570782	37699778	635	56818										
CT47B1	0	genome.wustl.edu	37	chrX	120009245	120009245	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccctcttcctcctcctcctCttcctccgtcgcgggcccga	6	23	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	120009245	120009245	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	69_37n	-1	known	missense	c.280	p.E94K	0.002	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446	23	0	0	12	11	47.83	-	-	-	T	120009245	C	T	120009245	3	4	658	1	0	0	0	0	1	0	0	0	4021	922	32	2	627	2	CT47B1	23	120009245	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2438463	120009245	35261315	636	56819										
GRIA3	0	genome.wustl.edu	37	chrX	122598859	122598859	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ttcctgctggagtcaaccatGaatgagtacattgagcagag	11	8	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	122598859	122598859	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.2220	p.M740I	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	50	0	0	54	23	29.49	-	-	-	A	122598859	G	A	122598859	3	1	658	1	0	0	0	0	1	0	0	0	6820	1290	45	2	2270	2	GRIA3	23	122598859	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	2589614	122598859	32671701	637	56820										
SMARCA1	0	genome.wustl.edu	37	chrX	128605204	128605204	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtgagaagtttttccttttCttcagtctcttctggtgtaa	8	7	4	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	128605204	128605204	C	G	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.2542	p.E848Q	1.000	pfam_ATPase_nucl-remodel_HAND-dom,superfamily_ATPase_nucl-remodel_HAND-dom	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	114	0	0	173	52	23.11	-	-	-	G	128605204	C	G	128605204	3	3	658	1	0	0	0	0	1	0	0	0	14857	922	32	2	642	2	SMARCA1	23	128605204	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	6006345	128605204	26665356	638	56821										
BCORL1	0	genome.wustl.edu	37	chrX	129146580	129146580	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	acctctttctgatgaggagtCaacgacaggcgactgccagc	11	12	3	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	129146580	129146580	C	G	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	nonsense	c.113	p.S38*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	61	0	0	86	40	31.75	-	-	-	G	129146580	C	G	129146580	4	3	658	1	0	0	0	0	0	1	0	0	1391	838	29	2	119	2	BCORL1	23	129146580	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	541376	129146580	26123980	639	56822										
OR13H1	0	genome.wustl.edu	37	chrX	130678345	130678345	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cttatccccgatgtttggctCaaacgagtgtctccttggct	9	12	2	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	130678345	130678345	C	G	SNP	OR13H1	ENST00000338616	human	ensembl	69_37n	1	known	missense	c.298	p.Q100E	0.129	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13H1	HGNC	ENSG00000171054	79	0	0	138	19	12.1	-	-	-	G	130678345	C	G	130678345	3	3	658	1	0	0	0	0	1	0	0	0	11016	827	29	2	300	2	OR13H1	23	130678345	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	1531765	130678345	24592215	640	56823										
MBNL3	0	genome.wustl.edu	37	chrX	131516235	131516235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tgtagttggtgcagcgaacgGaacgctggtggcaggtgttg	18	6	0	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	131516235	131516235	G	T	SNP	MBNL3	ENST00000370853	human	ensembl	69_37n	-1	known	missense	c.1024	p.P342T	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770	65	0	0	78	29	27.1	-	-	-	T	131516235	G	T	131516235	3	4	658	1	0	0	0	0	1	0	0	0	9426	1174	41	2	109	2	MBNL3	23	131516235	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	837890	131516235	23754325	641	56824										
ZNF75D	0	genome.wustl.edu	37	chrX	134427658	134427658	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	ggcaatctttcttcttacctCattctttgttccatcaggct	5	12	6	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	134427658	134427658	C	A	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	nonsense	c.409	p.E137*	0.019	pfam_Tscrpt_reg_SCAN,smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	16	0	0	33	13	28.26	-	-	-	A	134427658	C	A	134427658	4	1	658	1	0	0	0	0	0	1	0	0	18228	835	29	2	1143	2	ZNF75D	23	134427658	Nonsense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	2911423	134427658	20842902	642	56825										
DDX26B	0	genome.wustl.edu	37	chrX	134686019	134686019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caaatatgaacttgaaccttCgcccttaactcagtatatct	4	11	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	134686019	134686019	C	T	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.1007	p.S336L	0.998	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	55	0	0	78	37	31.9	-	-	-	T	134686019	C	T	134686019	3	4	658	1	0	0	0	0	1	0	0	0	4384	893	31	1	1037	1	DDX26B	23	134686019	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	258361	134686019	20584541	643	56826										
SAGE1	0	genome.wustl.edu	37	chrX	134993410	134993410	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	caaatggccaacaggcacctGataactccttgtcaacggtt	8	12	1	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	134993410	134993410	G	C	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.2065	p.D689H	0.057	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	48	0	0	63	31	32.98	-	-	-	C	134993410	G	C	134993410	3	2	658	1	0	0	0	0	1	0	0	0	13895	1290	45	2	2127	2	SAGE1	23	134993410	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	307391	134993410	20277150	644	56827										
MMGT1	0	genome.wustl.edu	37	chrX	135055869	135055869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	agcagcccagcaaaagaagcGaaggacggcggagctgtttc	14	10	0	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	135055869	135055869	G	A	SNP	MMGT1	ENST00000433339	human	ensembl	69_37n	-1	known	missense	c.161	p.S54L	0.057	NULL	pfam_Magnesium_transport	-	no_errors	MMGT1	HGNC	ENSG00000169446	10	0	0	9	5	35.71	-	-	-	A	135055869	G	A	135055869	3	1	658	1	0	0	0	0	1	0	0	0	9718	1073	37	1		1	MMGT1	23	135055869	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	62459	135055869	20214691	645	56828										
AFF2	0	genome.wustl.edu	37	chrX	148055004	148055004	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	tcatcttcctgtttcagttcGagaaatttggcaaagctgtg	9	8	3	1			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	148055004	148055004	G	C	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.3271	p.E1091Q	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	67	0	0	88	34	27.87	-	-	-	C	148055004	G	C	148055004	3	2	658	1	0	0	0	0	1	0	0	0	357	1059	37	3	3388	3	AFF2	23	148055004	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	12999135	148055004	7215556	646	56829										
MAGEA11	0	genome.wustl.edu	37	chrX	148798335	148798335	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	cccacgctgagaccagcaagAtgaaagttcttgagtacata	9	10	1	4			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	148798335	148798335	A	T	SNP	MAGEA11	ENST00000355220	human	ensembl	69_37n	1	known	missense	c.1189	p.M397L	0.183	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	30	0	0	33	8	18.6	-	-	-	T	148798335	A	T	148798335	3	4	658	1	0	0	0	0	1	0	0	0	9232	333	12	5	1216	5	MAGEA11	23	148798335	Missense_Mutation	SNP	A	TCGA-C8-A26Y-01A-11D-A16D-09	743331	148798335	6472225	647	56830										
MAGEA8	0	genome.wustl.edu	37	chrX	149013455	149013455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	aggagccggtcacaaaggcaGaaatgcttgagagtgtcatc	13	8	2	2			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	149013455	149013455	G	A	SNP	MAGEA8	ENST00000286482	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	0.048	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	47	0	0	78	17	17.89	-	-	-	A	149013455	G	A	149013455	3	1	658	1	0	0	0	0	1	0	0	0	9240	943	33	2	411	2	MAGEA8	23	149013455	Missense_Mutation	SNP	G	TCGA-C8-A26Y-01A-11D-A16D-09	215120	149013455	6257105	648	56831										
L1CAM	0	genome.wustl.edu	37	chrX	153128186	153128186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.53858024691358	349	1.19166289752301e-141	4.10992887359955	4.56001333407412	3.78618391080206	0.0873147592758775	0.5224358974359	264	gtcattgccccctgccgcctCcttctccttcttgccactgt	6	19	3	0			TCGA-C8-A26Y-01A-11D-A16D-09	TCGA-C8-A26Y-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b1c77e8b-cc4a-40aa-b858-5928aa761aa3	4a97d15d-98ec-4107-bfa4-21be8b5fba25	X	153128186	153128186	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.3712	p.E1238K	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	45	0	0	40	18	31.03	-	-	-	T	153128186	C	T	153128186	3	4	658	1	0	0	0	0	1	0	0	0	8642	864	30	2	71	2	L1CAM	23	153128186	Missense_Mutation	SNP	C	TCGA-C8-A26Y-01A-11D-A16D-09	4114731	153128186	2142374	649	56832										
EIF2C1	0	genome.wustl.edu	37	chr1	36358211	36358211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gcctcagatctttggtgatcGcaagcctgtgtatgatggaa	12	8	2	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	36358211	36358211	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.263	p.R88H	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	66	0	0	55	11	16.18	-	-	-	A	36358211	G	A	36358211	3	1	659	1	0	0	0	0	1	0	0	0	5040	1087	38	1	273	1	EIF2C1	1	36358211	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		36358211	212892410	1	56833										
SH3GLB1	0	genome.wustl.edu	37	chr1	87207920	87207920	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	caattatcttagtaacaacaAtcagacttctgtgacacctg	5	10	3	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	87207920	87207920	A	G	SNP	SH3GLB1	ENST00000482504	human	ensembl	69_37n	1	known	missense	c.854	p.N285S	1.000	superfamily_SH3_domain	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033	116	0	0	14	55	79.71	-	-	-	G	87207920	A	G	87207920	3	3	659	1	0	0	0	0	1	0	0	0	14342	101	4	5	821	5	SH3GLB1	1	87207920	Missense_Mutation	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09	50849709	87207920	162042701	2	56834										
AMPD1	0	genome.wustl.edu	37	chr1	115223011	115223011	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ggatagacgtaaactacaccGtccttcattttgaggtgata	9	8	1	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	115223011	115223011	G	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	silent	c.735	p.D245	0.460	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	61	0	0	26	11	29.73	-	-	-	A	115223011	G	A	115223011	2	1	659	1	0	0	0	0	0	0	0	1	585	1136	40	1		1	AMPD1	1	115223011	Silent	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	28015091	115223011	134027610	3	56835										
OR6K3	0	genome.wustl.edu	37	chr1	158687491	158687491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	agagagttgagcacagagccGgggggtcatgatcatttgat	15	6	2	5			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	158687491	158687491	G	A	SNP	OR6K3	ENST00000368146	human	ensembl	69_37n	-1	known	missense	c.463	p.R155W	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757	51	0	0	52	8	13.33	-	-	-	A	158687491	G	A	158687491	3	1	659	1	0	0	0	0	1	0	0	0	11276	1115	39	1	534	1	OR6K3	1	158687491	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	43464480	158687491	90563130	4	56836										
DEGS1	0	genome.wustl.edu	37	chr1	224377282	224377282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ttgttttttctttacagcaaAgtatccagagataaagtcct	6	7	1	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	224377282	224377282	A	G	SNP	DEGS1	ENST00000323699	human	ensembl	69_37n	1	known	missense	c.86	p.K29R	1.000	pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS1	HGNC	ENSG00000143753	38	0	0	45	7	13.46	-	-	-	G	224377282	A	G	224377282	3	3	659	1	0	0	0	0	1	0	0	0	4458	72	3	5	92	5	DEGS1	1	224377282	Missense_Mutation	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09	65689791	224377282	24873339	5	56837										
ALMS1	0	genome.wustl.edu	37	chr2	73659408	73659408	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgtgccaaaggctcctaaacAtttaaaagcaggtacgtaga	9	8	0	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	73659408	73659408	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1421	p.H474P	0.001	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	41	0	0	37	9	19.57	-	-	-	C	73659408	A	C	73659408	3	2	659	1	0	0	0	0	1	0	0	0	535	217	8	5	1447	5	ALMS1	2	73659408	Missense_Mutation	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09		73659408	169539965	6	56838										
XIRP2	0	genome.wustl.edu	37	chr2	168108454	168108454	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	aagaggaatctgcatttataAgtggtaaatgagcttgcaat	10	4	1	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	168108454	168108454	A	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.10552	p.S3518C	0.043	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	36	0	0	7	6	46.15	-	-	-	T	168108454	A	T	168108454	3	4	659	1	0	0	0	0	1	0	0	0	17527	72	3	5	10582	5	XIRP2	2	168108454	Missense_Mutation	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09	94449046	168108454	75090919	7	56839										
TRANK1	0	genome.wustl.edu	37	chr3	36900329	36900329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	agccaactcgaagtcctcatGtttcaggcacgtgacaactg	9	12	2	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	3	36900329	36900329	G	T	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.1420	p.H474N	0.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	44	0	0	30	4	11.76	-	-	-	T	36900329	G	T	36900329	3	4	659	1	0	0	0	0	1	0	0	0	16550	1377	48	4	7409	4	TRANK1	3	36900329	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		36900329	161122101	8	56840										
POU4F2	0	genome.wustl.edu	37	chr4	147561516	147561516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cgggacctggaggcattcgcCgagcgcttcaagcagcgacg	15	13	1	0			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	4	147561516	147561516	C	T	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	silent	c.786	p.A262	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	24	0	0	6	4	40	-	-	-	T	147561516	C	T	147561516	2	4	659	1	0	0	0	0	0	0	0	1	12352	639	23	1		1	POU4F2	4	147561516	Silent	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09		147561516	43592760	9	56841										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171766138	171766138	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cagatgtcgacttggtcttcGccctgaggtggctccgtttt	12	11	1	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	5	171766138	171766138	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	silent	c.1971	p.G657	0.552	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	89	0	0	33	26	42.62	-	-	-	A	171766138	G	A	171766138	2	1	659	1	0	0	0	0	0	0	0	1	14346	1074	38	1		1	SH3PXD2B	5	171766138	Silent	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		171766138	9149122	10	56842										
RUNX2	0	genome.wustl.edu	37	chr6	45399750	45399750	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgagatttgtgggccggagtGgacgaggtaggtctctgact	17	6	1	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	6	45399750	45399750	G	T	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	nonsense	c.778	p.G260*	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	78	0	0	65	21	24.42	-	-	-	T	45399750	G	T	45399750	4	4	659	1	0	0	0	0	0	1	0	0	13834	1349	47	4	600	4	RUNX2	6	45399750	Nonsense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		45399750	125715317	11	56843										
SENP6	0	genome.wustl.edu	37	chr6	76412369	76412369	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgttttttacagtgcacactGgtttttggctgttgtttgtt	10	5	0	0			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	6	76412369	76412369	G	A	SNP	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	nonsense	c.2297	p.W766*	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	70	0	0	25	29	52.73	-	-	-	A	76412369	G	A	76412369	4	1	659	1	0	0	0	0	0	1	0	0	14138	1357	47	4	2371	4	SENP6	6	76412369	Nonsense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	31012619	76412369	94702698	12	56844										
STAG3	0	genome.wustl.edu	37	chr7	99802723	99802723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ggagctcctttcagagttttCcccccgactcttccatcagg	8	15	3	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	99802723	99802723	C	T	SNP	STAG3	ENST00000317296	human	ensembl	69_37n	1	known	missense	c.3047	p.S1016F	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923	75	0	0	55	14	20.29	-	-	-	T	99802723	C	T	99802723	3	4	659	1	0	0	0	0	1	0	0	0	15335	855	30	2	3153	2	STAG3	7	99802723	Missense_Mutation	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09		99802723	59335940	13	56845										
ZAN	0	genome.wustl.edu	37	chr7	100349543	100349543	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	accatctccacagaaaaaccCaccattccttcagaaaaacc	2	16	2	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	100349543	100349543	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.1815	p.P605	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	408	0	0	336	81	19.33	-	-	-	T	100349543	C	T	100349543	2	4	659	1	0	0	0	0	0	0	0	1	17610	581	21	4		4	ZAN	7	100349543	Silent	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09	546820	100349543	58789120	14	56846										
KIAA1549	0	genome.wustl.edu	37	chr7	138593769	138593769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gttatacgttccctggtggtGttttctcacttcaaagagag	10	8	2	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	138593769	138593769	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	69_37n	-1	known	missense	c.3244	p.H1082Y	1.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	88	0	0	57	14	19.44	-	-	-	A	138593769	G	A	138593769	3	1	659	1	0	0	0	0	1	0	0	0	8296	1377	48	4	2672	4	KIAA1549	7	138593769	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	38244226	138593769	20544894	15	56847										
TEX15	0	genome.wustl.edu	37	chr8	30694937	30694937	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgactcagtttctgtaggctGtagtttgtttatctgcagag	11	6	3	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	30694937	30694937	G	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7714	p.Q2572E	0.002	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	61	0	0	52	8	13.33	-	-	-	C	30694937	G	C	30694937	3	2	659	1	0	0	0	0	1	0	0	0	15874	1386	48	4	663	4	TEX15	8	30694937	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		30694937	115669085	16	56848										
RP1	0	genome.wustl.edu	37	chr8	55537775	55537775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ctcaagaccaagcaaagcatCgtttttataggccccctaca	6	13	1	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	55537775	55537775	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.1333	p.R445C	0.034	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	43	0	0	36	14	28	-	-	-	T	55537775	C	T	55537775	3	4	659	1	0	0	0	0	1	0	0	0	13618	884	31	1	1343	1	RP1	8	55537775	Missense_Mutation	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09	24842838	55537775	90826247	17	56849										
EFR3A	0	genome.wustl.edu	37	chr8	132962331	132962331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tcatagtgatccagaaatacGaacagagtatgtattatttt	7	5	1	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	132962331	132962331	G	A	SNP	EFR3A	ENST00000254624	human	ensembl	69_37n	1	known	missense	c.482	p.R161Q	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294	99	0	0	100	25	20	-	-	-	A	132962331	G	A	132962331	3	1	659	1	0	0	0	0	1	0	0	0	4993	1058	37	1	500	1	EFR3A	8	132962331	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	77424556	132962331	13401691	18	56850										
FAM135B	0	genome.wustl.edu	37	chr8	139165210	139165210	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgttttgaaattcaccaattGatatatacacctgagattca	5	7	2	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	139165210	139165210	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.1508	p.S503L	0.066	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	91	0	0	71	19	21.11	-	-	-	A	139165210	G	A	139165210	3	1	659	1	0	0	0	0	1	0	0	0	5489	1294	45	2	2744	2	FAM135B	8	139165210	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	6202879	139165210	7198812	19	56851										
KIAA2026	0	genome.wustl.edu	37	chr9	5968121	5968121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	aagagaatgaagaccttcacGctttctctgtaagttttcat	7	8	3	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	9	5968121	5968121	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.2110	p.R704C	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	78	0	0	87	17	16.35	-	-	-	A	5968121	G	A	5968121	3	1	659	1	0	0	0	0	1	0	0	0	8322	1087	38	1	4225	1	KIAA2026	9	5968121	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		5968121	135245310	20	56852										
ZNF248	0	genome.wustl.edu	37	chr10	38121863	38121863	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	aaattcatttcacatgagtcAcatattttatagggataatt	5	5	3	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	10	38121863	38121863	A	C	SNP	ZNF248	ENST00000357328	human	ensembl	69_37n	-1	known	missense	c.420	p.C140W	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105	84	0	0	22	41	65.08	-	-	-	C	38121863	A	C	38121863	3	2	659	1	0	0	0	0	1	0	0	0	17889	157	6	5	1323	5	ZNF248	10	38121863	Missense_Mutation	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09		38121863	97412884	21	56853										
KCNK18	0	genome.wustl.edu	37	chr10	118969342	118969342	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgcagcatggagctgtttgaGagatctcatgcgctagagaa	13	7	1	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	10	118969342	118969342	G	T	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.687	p.E229D	0.401	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	83	0	0	25	12	32.43	-	-	-	T	118969342	G	T	118969342	3	4	659	1	0	0	0	0	1	0	0	0	8119	933	33	2	697	2	KCNK18	10	118969342	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	80847479	118969342	16565405	22	56854										
MAPK8IP1	0	genome.wustl.edu	37	chr11	45926335	45926335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gctgtgtcctggagatcagcGtgcggggtgtgaagataggc	18	7	1	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	11	45926335	45926335	G	A	SNP	MAPK8IP1	ENST00000241014	human	ensembl	69_37n	1	known	missense	c.1843	p.V615M	0.999	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP1	HGNC	ENSG00000121653	46	0	0	37	5	11.63	-	-	-	A	45926335	G	A	45926335	3	1	659	1	0	0	0	0	1	0	0	0	9355	1145	40	1	1877	1	MAPK8IP1	11	45926335	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		45926335	89080181	23	56855										
ABCC9	0	genome.wustl.edu	37	chr12	22063221	22063221	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ataagttagacgtagagagcCtaaggattttattataaatc	8	4	0	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	22063221	22063221	C	G	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.1190	p.R397T	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	67	0	0	28	25	47.17	-	-	-	G	22063221	C	G	22063221	3	3	659	1	0	0	0	0	1	0	0	0	59	681	24	4	3725	4	ABCC9	12	22063221	Missense_Mutation	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09		22063221	111788674	24	56856										
ARNTL2	0	genome.wustl.edu	37	chr12	27533206	27533206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tcatagccaaactgaaaagcGgaggagagataaaatgaata	10	5	1	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	27533206	27533206	G	A	SNP	ARNTL2	ENST00000266503	human	ensembl	69_37n	1	known	missense	c.353	p.R118Q	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold,pfam_PAS_fold_3,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	ARNTL2	HGNC	ENSG00000029153	72	0	0	56	14	20	-	-	-	A	27533206	G	A	27533206	3	1	659	1	0	0	0	0	1	0	0	0	972	1116	39	1	371	1	ARNTL2	12	27533206	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	5469985	27533206	106318689	25	56857										
ERBB3	0	genome.wustl.edu	37	chr12	56487649	56487649	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gaaattatagccgaggaggtGtctgtgtgacccactgcaac	12	9	1	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	56487649	56487649	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1582	p.V528F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	39	0	0	31	4	11.43	-	-	-	T	56487649	G	T	56487649	3	4	659	1	0	0	0	0	1	0	0	0	5245	1377	48	4	1763	4	ERBB3	12	56487649	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	28954443	56487649	77364246	26	56858										
PTPRB	0	genome.wustl.edu	37	chr12	71016202	71016202	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gctggagaagggctgagtagTcgacaaaacccatgatgtgt	14	7	0	3			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	71016202	71016202	T	C	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.676	p.T226A	0.404	NULL	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	119	0	0	93	19	16.81	-	-	-	C	71016202	T	C	71016202	3	2	659	1	0	0	0	0	1	0	0	0	12879	1667	58	5	6157	5	PTPRB	12	71016202	Missense_Mutation	SNP	T	TCGA-C8-A26Z-01A-11D-A16D-09	14528553	71016202	62835693	27	56859										
DNAJC3	0	genome.wustl.edu	37	chr13	96412387	96412387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	ctataagtgacttaaaagctGcgtcaaagttgaagaatgat	9	5	1	4			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	13	96412387	96412387	G	A	SNP	DNAJC3	ENST00000376795	human	ensembl	69_37n	1	known	missense	c.640	p.A214T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC3	HGNC	ENSG00000102580	127	0	0	89	31	25.83	-	-	-	A	96412387	G	A	96412387	3	1	659	1	0	0	0	0	1	0	0	0	4682	1319	46	4	662	4	DNAJC3	13	96412387	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		96412387	18757491	28	56860										
CDH24	0	genome.wustl.edu	37	chr14	23521744	23521744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cctcgcgatccaggggtgctGctgtatggatggtgccttcc	14	12	0	0			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	14	23521744	23521744	G	T	SNP	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	missense	c.1301	p.A434E	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	36	0	0	16	5	23.81	-	-	-	T	23521744	G	T	23521744	3	4	659	1	0	0	0	0	1	0	0	0	3138	1319	46	4	1182	4	CDH24	14	23521744	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		23521744	83827796	29	56861										
TECPR2	0	genome.wustl.edu	37	chr14	102916920	102916920	+	Frame_Shift_Del	DEL	C	C	-													0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cctactggaatcatgtggttCcccgtgggacagcttctgct							TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	14	102916920	102916920	C	-	DEL	TECPR2	ENST00000359520	human	ensembl	69_37n	1	known	frame_shift_del	c.3340	p.R1115fs	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	85	0	0	54	23	29.49	-	-	-	-	102916920	C	-	102916920	7	5	659	1	0	1	0	1	0	0	0	0	15839	855	30	0	3394	0	TECPR2	14	102916920	Frame_Shift_Del	DEL	C	TCGA-C8-A26Z-01A-11D-A16D-09	79395176	102916920	4432620	30	56862										
MAP1A	0	genome.wustl.edu	37	chr15	43816672	43816672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tggcttctcctccaccatctGgcccacccagtgccacccac	6	21	2	0			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	15	43816672	43816672	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.3001	p.G1001C	0.999	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	45	0	0	28	8	22.22	-	-	-	T	43816672	G	T	43816672	3	4	659	1	0	0	0	0	1	0	0	0	9298	1348	47	4	3003	4	MAP1A	15	43816672	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		43816672	58714720	31	56863										
VPS35	0	genome.wustl.edu	37	chr16	46694483	46694484	+	Frame_Shift_Del	DEL	CT	CT	-													0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tgaaaatgtttgttaatctgCtctgtttcttcactggattc							TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	16	46694483	46694484	CT	-	DEL	VPS35	ENST00000299138	human	ensembl	69_37n	-1	known	frame_shift_del	c.2292_2291	p.E764fs	0.997:1.000	superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329	127	0	0	86	23	21.1	-	-	-	-	46694484	CT	-	46694483	7	5	659	1	0	1	0	1	0	0	0	0	17300	796	28	0	102	0	VPS35	16	46694483	Frame_Shift_Del	DEL	CT	TCGA-C8-A26Z-01A-11D-A16D-09		46694483	43660270	32	56864										
CSHL1	0	genome.wustl.edu	37	chr17	61987302	61987302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	caagagaaggagagaccaagCgcttgggcactgttccctcc	12	12	0	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	17	61987302	61987302	C	T	SNP	CSHL1	ENST00000561003	human	ensembl	69_37n	-1	novel	missense	c.442	p.A148T	0.001	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	-	no_errors	CSHL1	HGNC	ENSG00000204414	87	0	0	50	17	25.37	-	-	-	T	61987302	C	T	61987302	3	4	659	1	0	0	0	0	1	0	0	0	3974	783	27	1		1	CSHL1	17	61987302	Missense_Mutation	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09		61987302	19207908	33	56865										
SDK2	0	genome.wustl.edu	37	chr17	71346499	71346499	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cgctgtggcctagggctccaGacttggcactgttccctgaa	12	13	0	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	17	71346499	71346499	G	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.5915	p.S1972Y	0.994	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	52	0	0	34	4	10.53	-	-	-	T	71346499	G	T	71346499	3	4	659	1	0	0	0	0	1	0	0	0	14057	942	33	2	615	2	SDK2	17	71346499	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	9359197	71346499	9848711	34	56866										
FXYD3	0	genome.wustl.edu	37	chr19	35610312	35610312	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gaccctgggcctgcttgtgtTcctggcaggtgagtacccat	13	12	0	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	19	35610312	35610312	T	G	SNP	FXYD3	ENST00000435734	human	ensembl	69_37n	1	known	missense	c.203	p.F68C	0.683	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD3	HGNC	ENSG00000089356	95	0	0	72	18	20	-	-	-	G	35610312	T	G	35610312	3	3	659	1	0	0	0	0	1	0	0	0	6168	1783	62	5	213	5	FXYD3	19	35610312	Missense_Mutation	SNP	T	TCGA-C8-A26Z-01A-11D-A16D-09		35610312	23518671	35	56867										
FUZ	0	genome.wustl.edu	37	chr19	50315962	50315962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tctgcccaaacatgtggactCcattgagggaaccgatgaca	10	11	1	2			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	19	50315962	50315962	C	T	SNP	FUZ	ENST00000313777	human	ensembl	69_37n	-1	known	missense	c.143	p.G48E	1.000	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361	41	0	0	35	8	18.6	-	-	-	T	50315962	C	T	50315962	3	4	659	1	0	0	0	0	1	0	0	0	6161	855	30	2	1153	2	FUZ	19	50315962	Missense_Mutation	SNP	C	TCGA-C8-A26Z-01A-11D-A16D-09	14705650	50315962	8813021	36	56868										
SLC24A3	0	genome.wustl.edu	37	chr20	19665914	19665915	+	Frame_Shift_Del	DEL	AG	AG	-													0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	gctgaggctggcaacgaaacAgagaatgaaaatgaggacaa							TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	20	19665914	19665915	AG	-	DEL	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	frame_shift_del	c.1233_1234	p.N413fs	0.306:0.999	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	85	0	0	39	5	11.36	-	-	-	-	19665915	AG	-	19665914	7	5	659	1	0	1	0	1	0	0	0	0	14556	175	7	0	1279	0	SLC24A3	20	19665914	Frame_Shift_Del	DEL	AG	TCGA-C8-A26Z-01A-11D-A16D-09		19665914	43359606	37	56869										
KRTAP19-4	0	genome.wustl.edu	37	chr21	31869332	31869332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	acagccataacccagtctgcGgaagctgccacatccacagc	8	16	1	0			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	21	31869332	31869332	G	A	SNP	KRTAP19-4	ENST00000334058	human	ensembl	69_37n	-1	known	missense	c.97	p.R33C	0.001	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-4	HGNC	ENSG00000186967	81	0	0	54	21	28	-	-	-	A	31869332	G	A	31869332	3	1	659	1	0	0	0	0	1	0	0	0	8584	1116	39	1	160	1	KRTAP19-4	21	31869332	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09		31869332	16260563	38	56870										
EBP	0	genome.wustl.edu	37	chrX	48385405	48385405	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	tatgccaagggagacagccgAtacatcctgtaagtgtttgc	11	9	0	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	X	48385405	48385405	A	T	SNP	EBP	ENST00000495186	human	ensembl	69_37n	1	known	silent	c.330	p.R110	0.990	pfam_EBP	pfam_EBP	-	no_errors	EBP	HGNC	ENSG00000147155	172	0	0	73	80	52.29	-	-	-	T	48385405	A	T	48385405	2	4	659	1	0	0	0	0	0	0	0	1	4921	320	12	5		5	EBP	23	48385405	Silent	SNP	A	TCGA-C8-A26Z-01A-11D-A16D-09		48385405	106885155	39	56871										
ZIC3	0	genome.wustl.edu	37	chrX	136651211	136651211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.291973791973792	0	0.321171171171171	1	1	0	cacgcacccgagctccctgcGcaaacacatgaaggtaatta	8	14	0	1			TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	X	136651211	136651211	G	A	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	missense	c.1211	p.R404H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	59	0	0	33	7	17.5	-	-	-	A	136651211	G	A	136651211	3	1	659	1	0	0	0	0	1	0	0	0	17776	1087	38	1	1217	1	ZIC3	23	136651211	Missense_Mutation	SNP	G	TCGA-C8-A26Z-01A-11D-A16D-09	88265806	136651211	18619349	40	56872										
FAM78B	0	genome.wustl.edu	37	chr1	166039779	166039779	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aactttggtctctcttgattCttgtgagcagtggcacattg	10	8	3	2			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	1	166039779	166039779	C	A	SNP	FAM78B	ENST00000338353	human	ensembl	69_37n	-1	known	missense	c.485	p.R162I	0.997	NULL	NULL	-	no_errors	FAM78B	HGNC	ENSG00000188859	72	0	0	121	27	18.24	-	-	-	A	166039779	C	A	166039779	3	1	660	1	0	0	0	0	1	0	0	0	5672	913	32	2	304	2	FAM78B	1	166039779	Missense_Mutation	SNP	C	TCGA-C8-A273-01A-11D-A16D-09		166039779	83210842	1	56873										
SCN3A	0	genome.wustl.edu	37	chr2	165952146	165952146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagattttcttcatatacagGctgaagtttaacctaaatga	6	7	2	3			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	2	165952146	165952146	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.4306	p.P1436S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	65	0	0	60	35	36.84	-	-	-	A	165952146	G	A	165952146	3	1	660	1	0	0	0	0	1	0	0	0	14006	1203	42	4	1712	4	SCN3A	2	165952146	Missense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		165952146	77247227	2	56874										
PCDHB6	0	genome.wustl.edu	37	chr5	140530373	140530373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctccaaccctcacttccacGttctcacccgcaatcgcagc	5	20	2	0			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	5	140530373	140530373	G	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.535	p.V179I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	56	0	0	42	20	32.26	-	-	-	A	140530373	G	A	140530373	3	1	660	1	0	0	0	0	1	0	0	0	11619	1145	40	1	537	1	PCDHB6	5	140530373	Missense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		140530373	40384887	3	56875										
UBN2	0	genome.wustl.edu	37	chr7	138968233	138968233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggccttattgctggttcttCcattcagaaccctaaagttt	7	10	2	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	7	138968233	138968233	C	A	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.2582	p.S861Y	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	41	0	0	176	32	15.38	-	-	-	A	138968233	C	A	138968233	3	1	660	1	0	0	0	0	1	0	0	0	16990	855	30	2	2640	2	UBN2	7	138968233	Missense_Mutation	SNP	C	TCGA-C8-A273-01A-11D-A16D-09		138968233	20170430	4	56876										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	62	0	0	96	34	26.15	-	-	-	G	8111514	-	G	8111513	7	5	660	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-C8-A273-01A-11D-A16D-09		8111513	127423234	5	56877										
DNA2	0	genome.wustl.edu	37	chr10	70231706	70231706	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttagaaaagggaaaaaggcGcgagcctgcgcacctcgcgc	13	12	0	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	10	70231706	70231706	G	A	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	silent	c.174	p.R58	0.012	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	33	0	0	16	9	36	-	-	-	A	70231706	G	A	70231706	2	1	660	1	0	0	0	0	0	0	0	1	4632	1074	38	1		1	DNA2	10	70231706	Silent	SNP	G	TCGA-C8-A273-01A-11D-A16D-09	62120193	70231706	65303041	6	56878										
OR8H1	0	genome.wustl.edu	37	chr11	56058034	56058034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gtgacgaactacatttgagtCgcagaaatgcagtctgctca	10	9	2	3			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	11	56058034	56058034	C	T	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	missense	c.505	p.D169N	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	49	0	0	59	30	33.71	-	-	-	T	56058034	C	T	56058034	3	4	660	1	0	0	0	0	1	0	0	0	11310	884	31	1	432	1	OR8H1	11	56058034	Missense_Mutation	SNP	C	TCGA-C8-A273-01A-11D-A16D-09		56058034	78948482	7	56879										
NPAS4	0	genome.wustl.edu	37	chr11	66191476	66191476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcactgggggctcccagaaGcaccagcttccccagtgctc	11	16	0	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	11	66191476	66191476	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.1115	p.S372N	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	24	0	0	36	20	35.71	-	-	-	A	66191476	G	A	66191476	3	1	660	1	0	0	0	0	1	0	0	0	10637	971	34	4	1141	4	NPAS4	11	66191476	Missense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09	10133442	66191476	68815040	8	56880										
ANO1	0	genome.wustl.edu	37	chr11	70007819	70007819	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctacacccccatcttttaCgtggcgttcttcaaaggccg	7	15	3	0			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	11	70007819	70007819	C	T	SNP	ANO1	ENST00000355303	human	ensembl	69_37n	1	known	silent	c.1872	p.Y624	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620	94	0	0	103	50	32.26	-	-	-	T	70007819	C	T	70007819	2	4	660	1	0	0	0	0	0	0	0	1	694	547	19	1		1	ANO1	11	70007819	Silent	SNP	C	TCGA-C8-A273-01A-11D-A16D-09	3816343	70007819	64998697	9	56881										
EP400	0	genome.wustl.edu	37	chr12	132562209	132562209	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagacacctactaagcctccGtgccagtagtcagggcagca	10	13	1	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	12	132562209	132562209	G	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	silent	c.9471	p.P3157	0.737	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	18	0	0	15	8	34.78	-	-	-	A	132562209	G	A	132562209	2	1	660	1	0	0	0	0	0	0	0	1	5186	1132	40	1		1	EP400	12	132562209	Silent	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		132562209	1289686	10	56882										
TTC7B	0	genome.wustl.edu	37	chr14	91077095	91077095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttattctcacctgtctcggGatcgctgaagtctggcaaag	10	10	3	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	14	91077095	91077095	G	T	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.1957	p.P653T	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	92	0	0	117	50	29.94	-	-	-	T	91077095	G	T	91077095	3	4	660	1	0	0	0	0	1	0	0	0	16810	1174	41	2	590	2	TTC7B	14	91077095	Missense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		91077095	16272445	11	56883										
SNUPN	0	genome.wustl.edu	37	chr15	75901960	75901960	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagaaaacctgttgacacaGtagccactcttggtgtaggc	11	9	1	2			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	15	75901960	75901960	G	T	SNP	SNUPN	ENST00000371091	human	ensembl	69_37n	-1	known	nonsense	c.567	p.Y189*	1.000	pirsf_Snurportin-1	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371	62	0	0	72	19	20.88	-	-	-	T	75901960	G	T	75901960	4	4	660	1	0	0	0	0	0	1	0	0	14966	1024	36	4	661	4	SNUPN	15	75901960	Nonsense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		75901960	26629432	12	56884										
CACNA1G	0	genome.wustl.edu	37	chr17	48703503	48703503	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctggggccagtcaagtacCcaggcacagcagcactcccg	11	15	2	0			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	17	48703503	48703503	C	G	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	silent	c.6525	p.T2175	0.958	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	28	0	0	18	16	47.06	-	-	-	G	48703503	C	G	48703503	2	3	660	1	0	0	0	0	0	0	0	1	2569	610	22	4		4	CACNA1G	17	48703503	Silent	SNP	C	TCGA-C8-A273-01A-11D-A16D-09		48703503	32491707	13	56885			1	96		2	2	102	C		5.872534e-05
CACNA1G	0	genome.wustl.edu	37	chr17	48703604	48703604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caactggggcaagggccctcCagagaccagaagcagcttag	13	12	0	2			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	17	48703604	48703604	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.6626	p.P2209L	0.014	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	22	0	0	26	17	39.53	-	-	-	T	48703604	C	T	48703604	3	4	660	1	0	0	0	0	1	0	0	0	2569	594	21	4	7043	4	CACNA1G	17	48703604	Missense_Mutation	SNP	C	TCGA-C8-A273-01A-11D-A16D-09	101	48703604	32491606	14	56886			1	96		2	2	102	C		5.872534e-05
NACA2	0	genome.wustl.edu	37	chr17	59668404	59668404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccaggctttttgtgtggtGgtctgggtggaatcctgttc	15	7	1	0			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	17	59668404	59668404	G	A	SNP	NACA2	ENST00000521764	human	ensembl	69_37n	-1	known	silent	c.138	p.T46	0.976	pirsf_Nas_poly-pep-assoc_cplx_asu	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pirsf_Nas_poly-pep-assoc_cplx_asu,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA2	HGNC	ENSG00000253506	96	0	0	480	58	10.78	-	-	-	A	59668404	G	A	59668404	2	1	660	1	0	0	0	0	0	0	0	1	10206	1335	47	4		4	NACA2	17	59668404	Silent	SNP	G	TCGA-C8-A273-01A-11D-A16D-09	10964800	59668404	21526806	15	56887										
SIRPB1	0	genome.wustl.edu	37	chr20	1551639	1551639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ccttgttctctatgagggtcGaagctgtttctgtccgggac	12	10	2	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	20	1551639	1551639	G	A	SNP	SIRPB1	ENST00000381605	human	ensembl	69_37n	-1	known	missense	c.896	p.S299L	0.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	139	0	0	165	96	36.64	-	-	-	A	1551639	G	A	1551639	3	1	660	1	0	0	0	0	1	0	0	0	14422	1059	37	1	308	1	SIRPB1	20	1551639	Missense_Mutation	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		1551639	61473881	16	56888										
SLC24A3	0	genome.wustl.edu	37	chr20	19662508	19662508	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcgctttgctcagatataaCgcttgcatacatcagtgctt	8	10	2	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	20	19662508	19662508	C	T	SNP	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	silent	c.774	p.N258	0.619	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	49	0	0	42	25	37.31	-	-	-	T	19662508	C	T	19662508	2	4	660	1	0	0	0	0	0	0	0	1	14556	535	19	1		1	SLC24A3	20	19662508	Silent	SNP	C	TCGA-C8-A273-01A-11D-A16D-09	18110869	19662508	43363012	17	56889										
APOBEC3A	0	genome.wustl.edu	37	chr22	39357391	39357391	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acactctgtttccttttctaGgctaagaatcttctctgtgg	7	10	4	1			TCGA-C8-A273-01A-11D-A16D-09	TCGA-C8-A273-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c5e6f325-5fd0-4cff-8eaf-6e23e016f605	938d7d67-f5e1-4fce-aacd-9224ed1a882f	22	39357391	39357391	G	A	SNP	APOBEC3A	ENST00000249116	human	ensembl	69_37n	1	known	splice_site	c.175-1	e3-1	0.000	-	-	-	no_errors	APOBEC3A	HGNC	ENSG00000128383	18	0	0	6	11	64.71	-	-	-	A	39357391	G	A	39357391	5	1	660	1	0	0	0	0	0	0	1	0	791	1014	35	4	184	4	APOBEC3A	22	39357391	Splice_Site	SNP	G	TCGA-C8-A273-01A-11D-A16D-09		39357391	11947175	18	56890										
UBE2J2	0	genome.wustl.edu	37	chr1	1190722	1190722	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gctggagccctgcgaggtttGggacggcccccggcgcatgc	17	14	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	1190722	1190722	G	T	SNP	UBE2J2	ENST00000400930	human	ensembl	69_37n	-1	known	missense	c.689	p.P230Q	0.972	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087	25	0	0	11	6	35.29	-	-	-	T	1190722	G	T	1190722	3	4	661	1	0	0	0	0	1	0	0	0	16958	1348	47	4	142	4	UBE2J2	1	1190722	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		1190722	248059899	1	56891										
KIF1B	0	genome.wustl.edu	37	chr1	10363841	10363841	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctgatcggatctcaggaacaGaaaagcccaggaagccacaa	10	11	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	10363841	10363841	G	C	SNP	KIF1B	ENST00000377083	human	ensembl	69_37n	1	known	missense	c.2598	p.Q866H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	25	0	0	10	7	41.18	-	-	-	C	10363841	G	C	10363841	3	2	661	1	0	0	0	0	1	0	0	0	8336	933	33	2	2676	2	KIF1B	1	10363841	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	9173119	10363841	238886780	2	56892										
VPS13D	0	genome.wustl.edu	37	chr1	12389921	12389921	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agcgtgtaagaactagccctGaaggctatgcccacttcacc	9	13	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	12389921	12389921	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.8233	p.E2745K	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	54	0	0	44	7	13.73	-	-	-	A	12389921	G	A	12389921	3	1	661	1	0	0	0	0	1	0	0	0	17289	1291	45	2	8375	2	VPS13D	1	12389921	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	2026080	12389921	236860700	3	56893										
CSMD2	0	genome.wustl.edu	37	chr1	34090136	34090136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tacctggatgccagcgccttCggggaccacgatcttccaca	10	15	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	34090136	34090136	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.5608	p.E1870K	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	35	0	0	28	10	26.32	-	-	-	T	34090136	C	T	34090136	3	4	661	1	0	0	0	0	1	0	0	0	3977	893	31	1	5115	1	CSMD2	1	34090136	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	21700215	34090136	215160485	4	56894										
STK40	0	genome.wustl.edu	37	chr1	36814341	36814341	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atgtaggcagggctccctctCtggtccttcagcaggtcccc	11	15	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	36814341	36814341	C	G	SNP	STK40	ENST00000373130	human	ensembl	69_37n	-1	known	missense	c.714	p.Q238H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK40	HGNC	ENSG00000196182	44	0	0	14	15	51.72	-	-	-	G	36814341	C	G	36814341	3	3	661	1	0	0	0	0	1	0	0	0	15398	912	32	2	628	2	STK40	1	36814341	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2724205	36814341	212436280	5	56895										
AMY2B	0	genome.wustl.edu	37	chr1	104116527	104116527	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aatctaaacagtaactggttCcctgcaggaagtaaaccttt	7	9	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	104116527	104116527	C	T	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	silent	c.711	p.F237	0.993	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	97	0	0	72	40	35.4	-	-	-	T	104116527	C	T	104116527	2	4	661	1	0	0	0	0	0	0	0	1	595	854	30	2		2	AMY2B	1	104116527	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	67302186	104116527	145134094	6	56896										
ACP6	0	genome.wustl.edu	37	chr1	147126421	147126421	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctgagattcctggctgtaaaGaggcagtctgcctccggcct	12	12	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	147126421	147126421	G	C	SNP	ACP6	ENST00000369238	human	ensembl	69_37n	-1	known	missense	c.668	p.S223C	0.314	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP6	HGNC	ENSG00000162836	34	0	0	95	11	10.28	-	-	-	C	147126421	G	C	147126421	3	2	661	1	0	0	0	0	1	0	0	0	165	942	33	2	638	2	ACP6	1	147126421	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	43009894	147126421	102124200	7	56897										
CA14	0	genome.wustl.edu	37	chr1	150235547	150235547	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acaactcccccttgctaccaGagtgtgctctggacagtttt	8	13	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	150235547	150235547	G	C	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	missense	c.669	p.Q223H	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	42	0	0	70	13	15.48	-	-	-	C	150235547	G	C	150235547	3	2	661	1	0	0	0	0	1	0	0	0	2540	933	33	2	695	2	CA14	1	150235547	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	3109126	150235547	99015074	8	56898										
C1orf56	0	genome.wustl.edu	37	chr1	151021205	151021205	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cccttccccaccatccacctCagaagcagtcccagcctgcc	5	22	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	151021205	151021205	C	T	SNP	C1orf56	ENST00000368926	human	ensembl	69_37n	1	known	silent	c.882	p.L294	0.000	NULL	superfamily_Thrombospondin_1_rpt	-	no_errors	C1orf56	HGNC	ENSG00000143443	65	0	0	108	14	11.48	-	-	-	T	151021205	C	T	151021205	2	4	661	1	0	0	0	0	0	0	0	1	2068	813	29	2		2	C1orf56	1	151021205	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	785658	151021205	98229416	9	56899										
GON4L	0	genome.wustl.edu	37	chr1	155735772	155735772	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acagccgcattgacaggctgGatcatgttacagccaccgcc	10	14	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	155735772	155735772	G	C	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.3492	p.I1164M	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	75	0	0	168	27	13.85	-	-	-	C	155735772	G	C	155735772	3	2	661	1	0	0	0	0	1	0	0	0	6621	1164	41	2	3395	2	GON4L	1	155735772	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	4714567	155735772	93514849	10	56900										
SEMA4A	0	genome.wustl.edu	37	chr1	156142776	156142776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gccttgatgggcacagccatCttgtcatgtacctgggaacc	11	12	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	156142776	156142776	C	G	SNP	SEMA4A	ENST00000355014	human	ensembl	69_37n	1	known	missense	c.1294	p.L432V	0.049	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4A	HGNC	ENSG00000196189	28	0	0	75	13	14.77	-	-	-	G	156142776	C	G	156142776	3	3	661	1	0	0	0	0	1	0	0	0	14119	913	32	2	1332	2	SEMA4A	1	156142776	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	407004	156142776	93107845	11	56901										
SEMA4A	0	genome.wustl.edu	37	chr1	156146369	156146369	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atggagttgggggtctctacCagtgctgggcaactgagaat	15	7	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	156146369	156146369	C	T	SNP	SEMA4A	ENST00000355014	human	ensembl	69_37n	1	known	nonsense	c.1867	p.Q623*	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4A	HGNC	ENSG00000196189	72	0	0	191	32	14.35	-	-	-	T	156146369	C	T	156146369	4	4	661	1	0	0	0	0	0	1	0	0	14119	595	21	4	1921	4	SEMA4A	1	156146369	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	3593	156146369	93104252	12	56902										
NES	0	genome.wustl.edu	37	chr1	156642072	156642072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agattaccttcaagagatttCattagttcttgattctcctt	5	8	4	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	156642072	156642072	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.1908	p.M636I	0.009	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	58	0	0	78	19	19.59	-	-	-	T	156642072	C	T	156642072	3	4	661	1	0	0	0	0	1	0	0	0	10409	826	29	2	2961	2	NES	1	156642072	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	495703	156642072	92608549	13	56903										
OR10R2	0	genome.wustl.edu	37	chr1	158449727	158449727	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tacttctttccccctttgcaGatcttggcagaaaacctcac	5	14	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	158449727	158449727	G	T	SNP	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	missense	c.60	p.Q20H	0.037	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	117	0	0	372	66	15.07	-	-	-	T	158449727	G	T	158449727	3	4	661	1	0	0	0	0	1	0	0	0	10990	933	33	2	62	2	OR10R2	1	158449727	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	1807655	158449727	90800894	14	56904										
DCAF6	0	genome.wustl.edu	37	chr1	168034923	168034923	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cggcacactgctgagcatttGatgcttctggaagctgataa	11	9	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	168034923	168034923	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	silent	c.2535	p.L845	0.995	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	81	0	0	168	25	12.95	-	-	-	A	168034923	G	A	168034923	2	1	661	1	0	0	0	0	0	0	0	1	4306	1281	45	2		2	DCAF6	1	168034923	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	9585196	168034923	81215698	15	56905										
SMG7	0	genome.wustl.edu	37	chr1	183511502	183511502	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agttttcctcccaaagaggtGagaagggactatagcaaagg	12	7	0	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	183511502	183511502	G	A	SNP	SMG7	ENST00000347615	human	ensembl	69_37n	1	known	silent	c.1707	p.V569	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	60	0	0	132	21	13.64	-	-	-	A	183511502	G	A	183511502	2	1	661	1	0	0	0	0	0	0	0	1	14887	1277	45	2		2	SMG7	1	183511502	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	15476579	183511502	65739119	16	56906										
ASPM	0	genome.wustl.edu	37	chr1	197113231	197113231	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ataacaattttctctttaggCtataatcaaaacaatacatt	2	7	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	197113231	197113231	C	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	splice_site	c.298-1	e2-1	1.000	-	-	-	no_errors	ASPM	HGNC	ENSG00000066279	37	0	0	80	15	15.79	-	-	-	T	197113231	C	T	197113231	5	4	661	1	0	0	0	0	0	0	1	0	1060	811	28	4	10244	4	ASPM	1	197113231	Splice_Site	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	13601729	197113231	52137390	17	56907										
CDK18	0	genome.wustl.edu	37	chr1	205499425	205499425	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atgtcagcagaggctgccctGagtcactcctacttccggtc	10	14	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	205499425	205499425	G	A	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.1350	p.L450	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	46	0	0	82	12	12.77	-	-	-	A	205499425	G	A	205499425	2	1	661	1	0	0	0	0	0	0	0	1	3163	1277	45	2		2	CDK18	1	205499425	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	8386194	205499425	43751196	18	56908										
PFKFB2	0	genome.wustl.edu	37	chr1	207243670	207243670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tggagcctgtcatcatggagCtggaacgtcagggcaatgtc	14	9	3	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	207243670	207243670	C	T	SNP	PFKFB2	ENST00000367080	human	ensembl	69_37n	1	known	silent	c.1138	p.L380	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB2	HGNC	ENSG00000123836	50	0	0	99	21	17.36	-	-	-	T	207243670	C	T	207243670	2	4	661	1	0	0	0	0	0	0	0	1	11835	796	28	4		4	PFKFB2	1	207243670	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1744245	207243670	42006951	19	56909										
CENPF	0	genome.wustl.edu	37	chr1	214815627	214815627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tactgcaggctgaaaagtatGaactcgtaactgagctgaat	10	7	0	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	214815627	214815627	G	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.3946	p.E1316K	0.071	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	26	0	0	61	20	24.69	-	-	-	A	214815627	G	A	214815627	3	1	661	1	0	0	0	0	1	0	0	0	3260	1291	45	2	3988	2	CENPF	1	214815627	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	7571957	214815627	34434994	20	56910										
ACTA1	0	genome.wustl.edu	37	chr1	229567374	229567374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccacaccgagtatttgcgctCcggcggggcgatgatctgca	13	13	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	229567374	229567374	C	T	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	missense	c.1006	p.E336K	0.998	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	40	0	0	133	17	11.33	-	-	-	T	229567374	C	T	229567374	3	4	661	1	0	0	0	0	1	0	0	0	191	864	30	2	131	2	ACTA1	1	229567374	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	14751747	229567374	19683247	21	56911										
ACTN2	0	genome.wustl.edu	37	chr1	236914892	236914892	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cagagctacaacatcagaatCagctcaagcaacccgtacag	7	13	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	236914892	236914892	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.1779	p.I593	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	39	0	0	105	15	12.5	-	-	-	T	236914892	C	T	236914892	2	4	661	1	0	0	0	0	0	0	0	1	205	816	29	2		2	ACTN2	1	236914892	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	7347518	236914892	12335729	22	56912										
RYR2	0	genome.wustl.edu	37	chr1	237895411	237895411	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gttgatcctctacatcagctGatccttctgtttagtcggac	8	11	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	237895411	237895411	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.10995	p.L3665	0.991	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	55	0	0	161	23	12.5	-	-	-	T	237895411	G	T	237895411	2	4	661	1	0	0	0	0	0	0	0	1	13855	1277	45	2		2	RYR2	1	237895411	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	980519	237895411	11355210	23	56913										
C1orf101	0	genome.wustl.edu	37	chr1	244803299	244803299	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttcttcactattcttgttttGagctactttcggtacatgag	7	8	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	244803299	244803299	G	C	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.2772	p.L924F	0.827	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	122	0	0	424	67	13.59	-	-	-	C	244803299	G	C	244803299	3	2	661	1	0	0	0	0	1	0	0	0	1995	1281	45	2	2858	2	C1orf101	1	244803299	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	6907888	244803299	4447322	24	56914										
OR2AK2	0	genome.wustl.edu	37	chr1	248128843	248128843	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	attcgactgaacaccagactCcacactccaatgtactttct	4	14	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	248128843	248128843	C	T	SNP	OR2AK2	ENST00000366480	human	ensembl	69_37n	1	known	silent	c.210	p.L70	0.989	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	80	0	0	233	40	14.65	-	-	-	T	248128843	C	T	248128843	2	4	661	1	0	0	0	0	0	0	0	1	11059	842	30	2		2	OR2AK2	1	248128843	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	3325544	248128843	1121778	25	56915										
OR2L3	0	genome.wustl.edu	37	chr1	248224664	248224664	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctccttgctgtctaccacatGaaatctgcagaagggaggaa	10	10	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	248224664	248224664	G	A	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	missense	c.681	p.M227I	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	107	0	0	329	41	11.05	-	-	-	A	248224664	G	A	248224664	3	1	661	1	0	0	0	0	1	0	0	0	11081	1290	45	2	683	2	OR2L3	1	248224664	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	95821	248224664	1025957	26	56916										
OR2T1	0	genome.wustl.edu	37	chr1	248569793	248569793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gctgaattcttcctgctgggCctcatggcctatgaccgcta	10	13	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	1	248569793	248569793	C	T	SNP	OR2T1	ENST00000366474	human	ensembl	69_37n	1	known	silent	c.498	p.G166	0.026	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	69	0	0	203	26	11.3	-	-	-	T	248569793	C	T	248569793	2	4	661	1	0	0	0	0	0	0	0	1	11089	726	26	4		4	OR2T1	1	248569793	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	345129	248569793	680828	27	56917										
MAP4K3	0	genome.wustl.edu	37	chr2	39553347	39553347	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	caagttctatggcagtgattCccactgcccagagatcacag	9	12	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	39553347	39553347	C	A	SNP	MAP4K3	ENST00000429397	human	ensembl	69_37n	-1	known	nonsense	c.382	p.E128*	1.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566	37	0	0	56	21	27.27	-	-	-	A	39553347	C	A	39553347	4	1	661	1	0	0	0	0	0	1	0	0	9332	855	30	2	2186	2	MAP4K3	2	39553347	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		39553347	203646026	28	56918										
ZNF2	0	genome.wustl.edu	37	chr2	95847133	95847133	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gaagaccttttttgaccactCatccctcacccgccatcaga	5	16	3	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	95847133	95847133	C	T	SNP	ZNF2	ENST00000340539	human	ensembl	69_37n	1	known	missense	c.560	p.S187L	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067	27	0	0	32	8	20	-	-	-	T	95847133	C	T	95847133	3	4	661	1	0	0	0	0	1	0	0	0	17856	838	29	2	574	2	ZNF2	2	95847133	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	56293786	95847133	147352240	29	56919										
STEAP3	0	genome.wustl.edu	37	chr2	120020658	120020658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	actgggctttgtggccctcgTgctgagcacactgcacacgc	12	14	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	120020658	120020658	T	C	SNP	STEAP3	ENST00000393110	human	ensembl	69_37n	1	known	missense	c.1241	p.V414A	1.000	NULL	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP3	HGNC	ENSG00000115107	17	0	0	11	6	35.29	-	-	-	C	120020658	T	C	120020658	3	2	661	1	0	0	0	0	1	0	0	0	15370	1696	59	5	1259	5	STEAP3	2	120020658	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	24173525	120020658	123178715	30	56920										
NEB	0	genome.wustl.edu	37	chr2	152520097	152520097	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	catcatatttttggccaattCaaagctcatggcatcaggaa	7	9	4	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	152520097	152520097	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.5728	p.E1910Q	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	63	0	0	159	49	23.44	-	-	-	G	152520097	C	G	152520097	3	3	661	1	0	0	0	0	1	0	0	0	10374	835	29	2	20510	2	NEB	2	152520097	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	32499439	152520097	90679276	31	56921										
IFIH1	0	genome.wustl.edu	37	chr2	163174697	163174697	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctgaatctgctccttcacctCtgcaggcagaaaggtcaggt	10	12	4	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	163174697	163174697	C	G	SNP	IFIH1	ENST00000263642	human	ensembl	69_37n	-1	known	missense	c.121	p.E41Q	0.385	NULL	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_DEATH-like,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267	37	0	0	49	7	12.5	-	-	-	G	163174697	C	G	163174697	3	3	661	1	0	0	0	0	1	0	0	0	7574	922	32	2	3020	2	IFIH1	2	163174697	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	10654600	163174697	80024676	32	56922										
TTN	0	genome.wustl.edu	37	chr2	179423171	179423171	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aagtattcagaattctctctCagaccggaaacaacgtgatg	8	9	3	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	179423171	179423171	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.79311	p.L26437	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	74	0	0	133	27	16.88	-	-	-	G	179423171	C	G	179423171	2	3	661	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179423171	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	16248474	179423171	63776202	33	56923										
CERKL	0	genome.wustl.edu	37	chr2	182403832	182403832	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gacttacctaatatggacctCtgatgcaacttccattaagt	6	10	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	182403832	182403832	C	T	SNP	CERKL	ENST00000339098	human	ensembl	69_37n	-1	known	missense	c.1603	p.E535K	0.999	NULL	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452	74	0	0	115	21	15.33	-	-	-	T	182403832	C	T	182403832	3	4	661	1	0	0	0	0	1	0	0	0	3297	922	32	2	81	2	CERKL	2	182403832	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2980661	182403832	60795541	34	56924										
PMS1	0	genome.wustl.edu	37	chr2	190742066	190742066	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gaggacatccaagacattatCtacagaatgaagcaccagtt	8	9	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	190742066	190742066	C	G	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.2703	p.I901M	0.296	NULL	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	52	0	0	120	16	11.76	-	-	-	G	190742066	C	G	190742066	3	3	661	1	0	0	0	0	1	0	0	0	12216	903	32	2	2749	2	PMS1	2	190742066	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	8338234	190742066	52457307	35	56925										
SLC39A10	0	genome.wustl.edu	37	chr2	196545103	196545103	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acgatcatgtttctcatttaGatattttggcagttcaagag	8	6	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	196545103	196545103	G	T	SNP	SLC39A10	ENST00000359634	human	ensembl	69_37n	1	known	missense	c.337	p.D113Y	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950	24	0	0	32	9	21.95	-	-	-	T	196545103	G	T	196545103	3	4	661	1	0	0	0	0	1	0	0	0	14702	942	33	2	339	2	SLC39A10	2	196545103	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	5803037	196545103	46654270	36	56926										
ALS2CR11	0	genome.wustl.edu	37	chr2	202356492	202356492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcctttctatcaagggacttCattttcagtgtcttttcaca	5	10	6	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	202356492	202356492	C	T	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.4572	p.M1524I	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	83	0	0	109	15	12.1	-	-	-	T	202356492	C	T	202356492	3	4	661	1	0	0	0	0	1	0	0	0	552	826	29	2	898	2	ALS2CR11	2	202356492	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	5811389	202356492	40842881	37	56927										
ALS2CR11	0	genome.wustl.edu	37	chr2	202357912	202357912	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccattaatgagttagttaaaCtttctaaagtagaactgaga	7	5	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	2	202357912	202357912	C	G	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.3152	p.S1051T	0.001	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	28	0	0	29	10	25.64	-	-	-	G	202357912	C	G	202357912	3	3	661	1	0	0	0	0	1	0	0	0	552	565	20	4	2318	4	ALS2CR11	2	202357912	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1420	202357912	40841461	38	56928										
FANCD2	0	genome.wustl.edu	37	chr3	10089640	10089640	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	catccattctgtcgctggctCagagtttgcttcactctcta	7	13	4	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	10089640	10089640	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	nonsense	c.1318	p.Q440*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	83	0	0	76	30	28.3	-	-	-	T	10089640	C	T	10089640	4	4	661	1	0	0	0	0	0	1	0	0	5711	827	29	2	1376	2	FANCD2	3	10089640	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		10089640	187932790	39	56929										
VGLL4	0	genome.wustl.edu	37	chr3	11623773	11623773	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tactaacctcactttaatcaTtgccaaagagcatgaagaca	5	10	2	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	11623773	11623773	T	C	SNP	VGLL4	ENST00000451674	human	ensembl	69_37n	-1	putative	missense	c.1	p.M1V	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560	58	0	0	22	20	47.62	-	-	-	C	11623773	T	C	11623773	3	2	661	1	0	0	0	0	1	0	0	0	17258	1493	52	5	653	5	VGLL4	3	11623773	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	1534133	11623773	186398657	40	56930										
TRANK1	0	genome.wustl.edu	37	chr3	36872506	36872506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acactttgctcgatgtcctgCaccaccagcttgccttcatc	6	16	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	36872506	36872506	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	silent	c.8436	p.V2812	0.997	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	81	0	0	54	40	42.55	-	-	-	T	36872506	C	T	36872506	2	4	661	1	0	0	0	0	0	0	0	1	16550	697	25	4		4	TRANK1	3	36872506	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	25248733	36872506	161149924	41	56931										
LRRFIP2	0	genome.wustl.edu	37	chr3	37114317	37114317	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttccaaagaagtgtctcctgGaggtcaaacacctcttttgt	8	10	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	37114317	37114317	G	A	SNP	LRRFIP2	ENST00000336686	human	ensembl	69_37n	-1	known	silent	c.1428	p.L476	1.000	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	93	0	0	74	35	31.82	-	-	-	A	37114317	G	A	37114317	2	1	661	1	0	0	0	0	0	0	0	1	9094	1161	41	2		2	LRRFIP2	3	37114317	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	241811	37114317	160908113	42	56932										
SCN11A	0	genome.wustl.edu	37	chr3	38913709	38913709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttccttcaaactgggacagcGcacgaagaggcctcagtgct	11	12	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	38913709	38913709	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.3470	p.A1157V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	36	0	0	26	10	27.78	-	-	-	A	38913709	G	A	38913709	3	1	661	1	0	0	0	0	1	0	0	0	14001	1087	38	1	1933	1	SCN11A	3	38913709	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	1799392	38913709	159108721	43	56933										
ZNF167	0	genome.wustl.edu	37	chr3	44612804	44612804	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tttagtcagcgttccactttTaatcaccaccagcgaactca	5	13	3	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	44612804	44612804	T	C	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	silent	c.2202	p.F734	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	54	0	0	41	17	29.31	-	-	-	C	44612804	T	C	44612804	2	2	661	1	0	0	0	0	0	0	0	1	17837	1751	61	5		5	ZNF167	3	44612804	Silent	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	5699095	44612804	153409626	44	56934										
SETD2	0	genome.wustl.edu	37	chr3	47144879	47144879	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cacagctgtgattcatgaaaCgagagcaatttcctttttga	8	8	1	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	47144879	47144879	C	A	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.4874	p.R1625L	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	98	0	0	53	40	43.01	-	-	-	A	47144879	C	A	47144879	3	1	661	1	0	0	0	0	1	0	0	0	14219	536	19	3	2880	3	SETD2	3	47144879	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2532075	47144879	150877551	45	56935										
ACPP	0	genome.wustl.edu	37	chr3	132050535	132050535	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cttggagagtatataagaaaGagatatagaaaattcttgaa	9	2	1	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	132050535	132050535	G	C	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	1	known	missense	c.261	p.K87N	0.757	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	49	0	0	52	16	23.53	-	-	-	C	132050535	G	C	132050535	3	2	661	1	0	0	0	0	1	0	0	0	167	933	33	2	271	2	ACPP	3	132050535	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	84905656	132050535	65971895	46	56936										
IGSF10	0	genome.wustl.edu	37	chr3	151165429	151165429	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gggagttgggtgaccactggGggtgggctcactgtggtatt	19	6	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	151165429	151165429	G	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.2340	p.P780	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	69	0	0	51	20	28.17	-	-	-	T	151165429	G	T	151165429	2	4	661	1	0	0	0	0	0	0	0	1	7651	1219	43	4		4	IGSF10	3	151165429	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	19114894	151165429	46857001	47	56937										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	33	0	0	23	35	60.34	-	-	-	G	178952085	A	G	178952085	3	3	661	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	27786656	178952085	19070345	48	56938										
ZFYVE28	0	genome.wustl.edu	37	chr4	2306914	2306914	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccgcaggcgcggtctacctgGagaggcctccccgcctgggc	15	17	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	2306914	2306914	G	C	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	missense	c.1153	p.P385A	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	10	0	0	14	5	26.32	-	-	-	C	2306914	G	C	2306914	3	2	661	1	0	0	0	0	1	0	0	0	17766	1174	41	2	1534	2	ZFYVE28	4	2306914	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		2306914	188847362	49	56939										
FBXL5	0	genome.wustl.edu	37	chr4	15640233	15640233	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gagttctgcagtatccttctGagagcagtgttgtgcaatca	11	8	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	15640233	15640233	G	C	SNP	FBXL5	ENST00000513163	human	ensembl	69_37n	-1	novel	nonsense	c.242	p.S81*	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXL5	HGNC	ENSG00000118564	85	0	0	57	21	26.92	-	-	-	C	15640233	G	C	15640233	4	2	661	1	0	0	0	0	0	1	0	0	5768	1299	45	2	1626	2	FBXL5	4	15640233	Nonsense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	13333319	15640233	175514043	50	56940										
PPARGC1A	0	genome.wustl.edu	37	chr4	23814411	23814411	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctccctttgcttggccctctCagactctcgcttctcatact	5	17	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	23814411	23814411	C	G	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	missense	c.1978	p.E660Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	125	0	0	148	57	27.8	-	-	-	G	23814411	C	G	23814411	3	3	661	1	0	0	0	0	1	0	0	0	12373	835	29	2	434	2	PPARGC1A	4	23814411	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	8174178	23814411	167339865	51	56941										
DCAF4L1	0	genome.wustl.edu	37	chr4	41984214	41984214	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tccctgtgctgggcctcgctGaaccagttggactctcacgt	11	14	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	41984214	41984214	G	A	SNP	DCAF4L1	ENST00000333141	human	ensembl	69_37n	1	known	silent	c.405	p.L135	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308	36	0	0	40	23	35.94	-	-	-	A	41984214	G	A	41984214	2	1	661	1	0	0	0	0	0	0	0	1	4303	1277	45	2		2	DCAF4L1	4	41984214	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	18169803	41984214	149170062	52	56942										
SDAD1	0	genome.wustl.edu	37	chr4	76878697	76878697	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcttcatcactgtctatttcAatgtatttcctcttctggga	5	10	7	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	76878697	76878697	A	T	SNP	SDAD1	ENST00000356260	human	ensembl	69_37n	-1	known	silent	c.1743	p.I581	0.163	pfam_SDA1	pfam_SDA1,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	79	0	0	96	40	29.2	-	-	-	T	76878697	A	T	76878697	2	4	661	1	0	0	0	0	0	0	0	1	14038	126	5	5		5	SDAD1	4	76878697	Silent	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	34894483	76878697	114275579	53	56943										
PTPN13	0	genome.wustl.edu	37	chr4	87691103	87691103	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggagatgttatcttgaaagtGaatggagcctctttgaaagg	13	4	2	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	87691103	87691103	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	silent	c.4686	p.V1562	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	57	0	0	66	23	25.84	-	-	-	A	87691103	G	A	87691103	2	1	661	1	0	0	0	0	0	0	0	1	12863	1277	45	2		2	PTPN13	4	87691103	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	10812406	87691103	103463173	54	56944										
MMRN1	0	genome.wustl.edu	37	chr4	90857679	90857679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctaccatccctaagtggataAaacattccctgccagatatt	5	12	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	90857679	90857679	A	G	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.2848	p.K950E	0.514	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	34	0	0	22	11	33.33	-	-	-	G	90857679	A	G	90857679	3	3	661	1	0	0	0	0	1	0	0	0	9742	15	1	5	2870	5	MMRN1	4	90857679	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	3166576	90857679	100296597	55	56945										
ANAPC10	0	genome.wustl.edu	37	chr4	145985831	145985831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ataaatacataatgtcttcaCtgttgtttttcttctaaaag	4	6	4	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	145985831	145985831	C	T	SNP	ANAPC10	ENST00000309439	human	ensembl	69_37n	-1	known	missense	c.220	p.V74M	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10	-	no_errors	ANAPC10	HGNC	ENSG00000164162	74	0	0	70	43	38.05	-	-	-	T	145985831	C	T	145985831	3	4	661	1	0	0	0	0	1	0	0	0	599	565	20	4	345	4	ANAPC10	4	145985831	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	55128152	145985831	45168445	56	56946										
TIGD4	0	genome.wustl.edu	37	chr4	153691716	153691716	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acacctgtagcttctacaggTtgagctctgaatactaaacc	7	11	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	153691716	153691716	T	C	SNP	TIGD4	ENST00000304337	human	ensembl	69_37n	-1	known	silent	c.441	p.Q147	1.000	pfam_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989	26	0	0	23	4	14.81	-	-	-	C	153691716	T	C	153691716	2	2	661	1	0	0	0	0	0	0	0	1	15993	1722	60	5		5	TIGD4	4	153691716	Silent	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	7705885	153691716	37462560	57	56947										
FGA	0	genome.wustl.edu	37	chr4	155507948	155507948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctatctctagagggaagtaaGtctttggcaatgacctgttc	10	8	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	155507948	155507948	G	T	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.633	p.D211E	0.003	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	67	0	0	81	19	19	-	-	-	T	155507948	G	T	155507948	3	4	661	1	0	0	0	0	1	0	0	0	5876	1020	36	4	2019	4	FGA	4	155507948	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	1816232	155507948	35646328	58	56948										
HMGB2	0	genome.wustl.edu	37	chr4	174254097	174254097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aatggataggccagggtgttCacttttgatctttgggcgat	13	6	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	4	174254097	174254097	C	T	SNP	HMGB2	ENST00000296503	human	ensembl	69_37n	-1	known	missense	c.346	p.E116K	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB2	HGNC	ENSG00000164104	88	0	0	94	36	27.69	-	-	-	T	174254097	C	T	174254097	3	4	661	1	0	0	0	0	1	0	0	0	7277	835	29	2	291	2	HMGB2	4	174254097	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	18746149	174254097	16900179	59	56949										
CDH12	0	genome.wustl.edu	37	chr5	21842404	21842404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gatattgttctttgacttctCtgtccatgtttggcaaagct	8	8	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	21842404	21842404	C	T	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.680	p.R227K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	64	0	0	78	33	29.73	-	-	-	T	21842404	C	T	21842404	3	4	661	1	0	0	0	0	1	0	0	0	3127	913	32	2	1736	2	CDH12	5	21842404	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		21842404	159072856	60	56950										
GFM2	0	genome.wustl.edu	37	chr5	74047198	74047198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggaatcgtaccatacctggtGtatcaattagattgactcta	8	8	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	74047198	74047198	G	A	SNP	GFM2	ENST00000296805	human	ensembl	69_37n	-1	known	missense	c.425	p.T142I	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347	59	0	0	49	24	32.43	-	-	-	A	74047198	G	A	74047198	3	1	661	1	0	0	0	0	1	0	0	0	6394	1377	48	4	2010	4	GFM2	5	74047198	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	52204794	74047198	106868062	61	56951										
CMYA5	0	genome.wustl.edu	37	chr5	79057687	79057687	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aaagctactgcatttttgaaGatctggaacctgaccgatgc	9	9	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	79057687	79057687	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.11314	p.D3772N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	47	0	0	64	32	33.33	-	-	-	A	79057687	G	A	79057687	3	1	661	1	0	0	0	0	1	0	0	0	3620	942	33	2	11344	2	CMYA5	5	79057687	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	5010489	79057687	101857573	62	56952										
MCTP1	0	genome.wustl.edu	37	chr5	94267685	94267685	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gatcttttccaactcttcctCattagcattgtctgtaaata	4	10	4	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	94267685	94267685	C	T	SNP	MCTP1	ENST00000515393	human	ensembl	69_37n	-1	known	missense	c.1185	p.M395I	1.000	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	69	0	0	69	25	26.6	-	-	-	T	94267685	C	T	94267685	3	4	661	1	0	0	0	0	1	0	0	0	9471	826	29	2	1886	2	MCTP1	5	94267685	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	15209998	94267685	86647575	63	56953										
RHOBTB3	0	genome.wustl.edu	37	chr5	95084070	95084070	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tacatgcccactatgtacctCagacagagggagctgtgtta	10	10	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	95084070	95084070	C	G	SNP	RHOBTB3	ENST00000379982	human	ensembl	69_37n	1	known	nonsense	c.449	p.S150*	0.999	pfam_Small_GTPase	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292	63	0	0	77	29	27.1	-	-	-	G	95084070	C	G	95084070	4	3	661	1	0	0	0	0	0	1	0	0	13419	838	29	2	463	2	RHOBTB3	5	95084070	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	816385	95084070	85831190	64	56954										
SNX2	0	genome.wustl.edu	37	chr5	122153033	122153033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcagcaacttaggaaacttcAtgtcagtgttgaagccttgg	10	8	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	122153033	122153033	A	C	SNP	SNX2	ENST00000379516	human	ensembl	69_37n	1	known	missense	c.971	p.H324P	1.000	pfam_Vps5_C	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX2	HGNC	ENSG00000205302	78	0	0	80	34	29.82	-	-	-	C	122153033	A	C	122153033	3	2	661	1	0	0	0	0	1	0	0	0	14980	217	8	5	1009	5	SNX2	5	122153033	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	27068963	122153033	58762227	65	56955										
DOCK2	0	genome.wustl.edu	37	chr5	169461520	169461520	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cggggtgtgatgacagatgaGagcaaagacaaccgcatgag	15	7	0	6			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	5	169461520	169461520	G	C	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.3585	p.E1195D	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	45	0	0	53	11	17.19	-	-	-	C	169461520	G	C	169461520	3	2	661	1	0	0	0	0	1	0	0	0	4722	933	33	2	3723	2	DOCK2	5	169461520	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	47308487	169461520	11453740	66	56956										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032136	26032136	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gacttttggtagcggcggatCtcgcgcagagccacagtgcc	14	12	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	26032136	26032136	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	silent	c.153	p.E51	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	23	0	0	13	4	23.53	-	-	-	T	26032136	C	T	26032136	2	4	661	1	0	0	0	0	0	0	0	1	7207	912	32	2		2	HIST1H3B	6	26032136	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		26032136	145082931	67	56957										
MRPL2	0	genome.wustl.edu	37	chr6	43022095	43022095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctttcggccagcccagccccCcttgcggtgccaccgcccac	9	22	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	43022095	43022095	C	T	SNP	MRPL2	ENST00000388752	human	ensembl	69_37n	-1	known	missense	c.835	p.G279R	1.000	superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like	-	no_errors	MRPL2	HGNC	ENSG00000112651	27	0	0	8	11	57.89	-	-	-	T	43022095	C	T	43022095	3	4	661	1	0	0	0	0	1	0	0	0	9857	623	22	4	86	4	MRPL2	6	43022095	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	16989959	43022095	128092972	68	56958										
KCNQ5	0	genome.wustl.edu	37	chr6	73904286	73904286	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cattccagatcccaccttttGaatgtgaacagacatctgac	6	12	1	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	73904286	73904286	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	1	known	missense	c.1978	p.E660K	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	44	0	0	31	18	36	-	-	-	A	73904286	G	A	73904286	3	1	661	1	0	0	0	0	1	0	0	0	8140	1291	45	2	2063	2	KCNQ5	6	73904286	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	30882191	73904286	97210781	69	56959										
CASP8AP2	0	genome.wustl.edu	37	chr6	90573267	90573267	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccctccataagtgaacatatCttgggggaagcagctgtcag	11	10	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	90573267	90573267	C	G	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.413	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	48	0	0	38	13	25.49	-	-	-	G	90573267	C	G	90573267	1	3	661	0	1	0	0	0	0	0	0	0	2703	903	32	2		2	CASP8AP2	6	90573267	RNA	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	16668981	90573267	80541800	70	56960										
REV3L	0	genome.wustl.edu	37	chr6	111696566	111696566	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tacttgtttttctttagagtCtatttttcctagcttcacaa	4	8	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	111696566	111696566	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.2992	p.D998N	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	51	0	0	53	15	22.06	-	-	-	T	111696566	C	T	111696566	3	4	661	1	0	0	0	0	1	0	0	0	13323	913	32	2	6480	2	REV3L	6	111696566	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	21123299	111696566	59418501	71	56961										
DSE	0	genome.wustl.edu	37	chr6	116757178	116757178	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atggtctaaatacaagcatgAcctggcagctagttgtcagg	11	8	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	116757178	116757178	A	G	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.1604	p.D535G	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	15	0	0	23	11	32.35	-	-	-	G	116757178	A	G	116757178	3	3	661	1	0	0	0	0	1	0	0	0	4809	275	10	5	1565	5	DSE	6	116757178	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	5060612	116757178	54357889	72	56962										
TAAR6	0	genome.wustl.edu	37	chr6	132892456	132892456	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gtaactggtcaggttttaaaGaacagttcagcaaccatgaa	9	7	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	132892456	132892456	G	C	SNP	TAAR6	ENST00000275198	human	ensembl	69_37n	1	known	missense	c.996	p.K332N	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR6	HGNC	ENSG00000146383	21	0	0	19	8	29.63	-	-	-	C	132892456	G	C	132892456	3	2	661	1	0	0	0	0	1	0	0	0	15584	933	33	2	998	2	TAAR6	6	132892456	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	16135278	132892456	38222611	73	56963										
SYNE1	0	genome.wustl.edu	37	chr6	152804231	152804231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aatttttaccttatgttgctCaagtttccgttgtatcgtgt	7	7	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	152804231	152804231	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.1339	p.E447Q	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	132	0	0	167	48	22.22	-	-	-	G	152804231	C	G	152804231	3	3	661	1	0	0	0	0	1	0	0	0	15537	835	29	2	25659	2	SYNE1	6	152804231	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	19911775	152804231	18310836	74	56964										
FNDC1	0	genome.wustl.edu	37	chr6	159660685	159660685	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccgctggtgggcttggaggtCatcaaaaaaaccacccatcc	10	13	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	6	159660685	159660685	C	A	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	1	novel	missense	c.4003	p.H1335N	0.014	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	63	0	0	48	20	28.99	-	-	-	A	159660685	C	A	159660685	3	1	661	1	0	0	0	0	1	0	0	0	6014	813	29	2	4371	2	FNDC1	6	159660685	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	6856454	159660685	11454382	75	56965										
INTS1	0	genome.wustl.edu	37	chr7	1542644	1542644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cactcagagggggtgtggagGagagtttggggcgtttggtg	21	4	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	1542644	1542644	G	A	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.626	p.S209F	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	54	0	0	68	12	15	-	-	-	A	1542644	G	A	1542644	3	1	661	1	0	0	0	0	1	0	0	0	7829	1174	41	2	6514	2	INTS1	7	1542644	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		1542644	157596019	76	56966										
INTS1	0	genome.wustl.edu	37	chr7	1542722	1542722	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccgcatcccgcttgcgctcaGaaggcaggccggaaggggct	15	14	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	1542722	1542722	G	C	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.548	p.S183C	0.914	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	60	0	0	70	16	18.39	-	-	-	C	1542722	G	C	1542722	3	2	661	1	0	0	0	0	1	0	0	0	7829	942	33	2	6592	2	INTS1	7	1542722	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	78	1542722	157595941	77	56967										
NPC1L1	0	genome.wustl.edu	37	chr7	44553138	44553138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gtggttgacatagatgttgtCagctgtggagactcgggagg	17	5	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	44553138	44553138	C	G	SNP	NPC1L1	ENST00000289547	human	ensembl	69_37n	-1	known	missense	c.3988	p.D1330H	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	62	0	0	27	22	44.9	-	-	-	G	44553138	C	G	44553138	3	3	661	1	0	0	0	0	1	0	0	0	10643	826	29	2	95	2	NPC1L1	7	44553138	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	43010416	44553138	114585525	78	56968										
C7orf23	0	genome.wustl.edu	37	chr7	86827187	86827187	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttttgtatagacccaaggctGaaaatttttgtcctgtgcat	8	7	0	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	86827187	86827187	G	A	SNP	C7orf23	ENST00000423734	human	ensembl	69_37n	-1	putative	nonsense	c.304	p.Q102*	0.000	NULL	pfam_DUF2678	-	no_errors	C7orf23	HGNC	ENSG00000135185	18	0	0	22	5	18.52	-	-	-	A	86827187	G	A	86827187	4	1	661	1	0	0	0	0	0	1	0	0	2402	1305	45	2		2	C7orf23	7	86827187	Nonsense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	42274049	86827187	72311476	79	56969										
SMURF1	0	genome.wustl.edu	37	chr7	98648569	98648569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgtatggccttgtagaaggaAttcgtatagaaaagctgcat	11	5	0	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	98648569	98648569	A	G	SNP	SMURF1	ENST00000361125	human	ensembl	69_37n	-1	known	missense	c.853	p.F285L	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF1	HGNC	ENSG00000198742	24	0	0	19	5	20.83	-	-	-	G	98648569	A	G	98648569	3	3	661	1	0	0	0	0	1	0	0	0	14908	101	4	5	1464	5	SMURF1	7	98648569	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	11821382	98648569	60490094	80	56970										
SLC26A3	0	genome.wustl.edu	37	chr7	107431617	107431617	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tagttgcattgcgatctgggActgcttttgaaactgctcct	10	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	107431617	107431617	A	T	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	missense	c.446	p.V149D	0.002	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	107	0	0	105	36	25.35	-	-	-	T	107431617	A	T	107431617	3	4	661	1	0	0	0	0	1	0	0	0	14607	275	10	5	1916	5	SLC26A3	7	107431617	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	8783048	107431617	51707046	81	56971										
PDIA4	0	genome.wustl.edu	37	chr7	148718177	148718177	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttccaagtcgtcttcttcctCatcatcatcttcctcctcct	2	17	6	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	148718177	148718177	C	T	SNP	PDIA4	ENST00000286091	human	ensembl	69_37n	-1	known	missense	c.151	p.E51K	0.274	pirsf_Protein_diS-isomerase_A4	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660	80	0	0	135	38	21.97	-	-	-	T	148718177	C	T	148718177	3	4	661	1	0	0	0	0	1	0	0	0	11743	835	29	2	1822	2	PDIA4	7	148718177	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	41286560	148718177	10420486	82	56972										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	12	0	0	17	5	22.73	-	-	-	-	150884268	AG	-	150884267	7	5	661	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-C8-A274-01A-11D-A16D-09	2166090	150884267	8254396	83	56973										
ADAM28	0	genome.wustl.edu	37	chr8	24209527	24209527	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agatgaagccccatgtgtatGatctgccagtagaaggcaat	11	8	1	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	24209527	24209527	G	T	SNP	ADAM28	ENST00000265769	human	ensembl	69_37n	1	known	missense	c.2206	p.D736Y	0.039	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	61	0	0	67	29	29.9	-	-	-	T	24209527	G	T	24209527	3	4	661	1	0	0	0	0	1	0	0	0	246	1290	45	2	2344	2	ADAM28	8	24209527	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		24209527	122154495	84	56974										
MCM4	0	genome.wustl.edu	37	chr8	48875562	48875562	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gtgaacacatcaaatcatttGacaaaaatttgtacagacaa	5	7	2	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	48875562	48875562	G	C	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	missense	c.655	p.D219H	1.000	superfamily_NA-bd_OB-fold-like	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	55	0	0	42	11	20.75	-	-	-	C	48875562	G	C	48875562	3	2	661	1	0	0	0	0	1	0	0	0	9460	1290	45	2	677	2	MCM4	8	48875562	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	24666035	48875562	97488460	85	56975										
WWP1	0	genome.wustl.edu	37	chr8	87437451	87437451	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atttttgtatttttattaaaGgtgggaacaaagaaaagatc	8	2	0	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	87437451	87437451	G	A	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	splice_site	c.1062-1	e8-1	1.000	-	-	-	no_errors	WWP1	HGNC	ENSG00000123124	40	0	0	32	13	28.89	-	-	-	A	87437451	G	A	87437451	5	1	661	1	0	0	0	0	0	0	1	0	17512	1014	35	4	1091	4	WWP1	8	87437451	Splice_Site	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	38561889	87437451	58926571	86	56976										
WWP1	0	genome.wustl.edu	37	chr8	87464813	87464813	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgacagaatggcgtttttctCgaggagtacaagaacagacc	11	8	1	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	87464813	87464813	C	T	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	nonsense	c.2299	p.R767*	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	WWP1	HGNC	ENSG00000123124	88	0	0	120	27	18.37	-	-	-	T	87464813	C	T	87464813	4	4	661	1	0	0	0	0	0	1	0	0	17512	876	31	1	2373	1	WWP1	8	87464813	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	27362	87464813	58899209	87	56977										
CSMD3	0	genome.wustl.edu	37	chr8	113266484	113266484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	catagctaaagtacccacttGaaatccgaatgtattgttct	6	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	113266484	113266484	G	C	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.10108	p.Q3370E	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	55	0	0	55	19	25.68	-	-	-	C	113266484	G	C	113266484	3	2	661	1	0	0	0	0	1	0	0	0	3978	1299	45	2	1051	2	CSMD3	8	113266484	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	25801671	113266484	33097538	88	56978										
ZFP41	0	genome.wustl.edu	37	chr8	144332515	144332515	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atcagaagacgcacaccgggGagaagccctacgaatgcacg	12	12	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	8	144332515	144332515	G	C	SNP	ZFP41	ENST00000330701	human	ensembl	69_37n	1	known	missense	c.502	p.E168Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	Clone_based_vega_gene	ENSG00000181638	23	0	0	25	7	21.88	-	-	-	C	144332515	G	C	144332515	3	2	661	1	0	0	0	0	1	0	0	0	17745	1175	41	2	504	2	ZFP41	8	144332515	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	31066031	144332515	2031507	89	56979										
DOCK8	0	genome.wustl.edu	37	chr9	376234	376234	+	Frame_Shift_Del	DEL	A	A	-													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcccattacagaatcctcccAttaagtgggctgaaggacat							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	9	376234	376234	A	-	DEL	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	frame_shift_del	c.2134	p.I712fs	0.986	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	48	0	0	57	8	11.76	-	-	-	-	376234	A	-	376234	7	5	661	1	0	1	0	1	0	0	0	0	4728	217	8	0	2208	0	DOCK8	9	376234	Frame_Shift_Del	DEL	A	TCGA-C8-A274-01A-11D-A16D-09		376234	140837197	90	56980										
PALM2	0	genome.wustl.edu	37	chr9	112705539	112705539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	attgagggagaagacagtgaCggacgtgtccactattgacg	14	7	0	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	9	112705539	112705539	C	T	SNP	PALM2	ENST00000448454	human	ensembl	69_37n	1	known	missense	c.1076	p.T359M	1.000	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444	39	0	0	46	12	20.69	-	-	-	T	112705539	C	T	112705539	3	4	661	1	0	0	0	0	1	0	0	0	11482	536	19	1	1106	1	PALM2	9	112705539	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	112329305	112705539	28507892	91	56981										
C9orf78	0	genome.wustl.edu	37	chr9	132595746	132595746	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttatctttgcccctttccttCagtttcttcatatccaccat	2	14	4	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	9	132595746	132595746	C	T	SNP	C9orf78	ENST00000372447	human	ensembl	69_37n	-1	known	silent	c.246	p.L82	0.996	NULL	pfam_Hep_59	-	no_errors	C9orf78	HGNC	ENSG00000136819	81	0	0	115	39	25.32	-	-	-	T	132595746	C	T	132595746	2	4	661	1	0	0	0	0	0	0	0	1	2521	813	29	2		2	C9orf78	9	132595746	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	19890207	132595746	8617685	92	56982										
RAPGEF1	0	genome.wustl.edu	37	chr9	134503379	134503379	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agctgctcgtctgacttgctGagcttgcctatgctgctgca	11	12	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	9	134503379	134503379	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	silent	c.1125	p.L375	0.997	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	26	0	0	22	13	37.14	-	-	-	A	134503379	G	A	134503379	2	1	661	1	0	0	0	0	0	0	0	1	13126	1277	45	2		2	RAPGEF1	9	134503379	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	1907633	134503379	6710052	93	56983										
DIP2C	0	genome.wustl.edu	37	chr10	375423	375423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cttggtgcacagctccatcaCggagtaggagcaaaacgtgt	12	10	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	375423	375423	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.3703	p.V1235M	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	32	0	0	40	14	25.93	-	-	-	T	375423	C	T	375423	3	4	661	1	0	0	0	0	1	0	0	0	4565	536	19	1	999	1	DIP2C	10	375423	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		375423	135159324	94	56984										
PITRM1	0	genome.wustl.edu	37	chr10	3191919	3191919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	catgccattggtgggctgggCgcagtactgaacagggatat	15	8	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	3191919	3191919	C	T	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.1765	p.A589T	0.387	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	37	0	0	27	11	28.95	-	-	-	T	3191919	C	T	3191919	3	4	661	1	0	0	0	0	1	0	0	0	12027	768	27	1	1396	1	PITRM1	10	3191919	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2816496	3191919	132342828	95	56985										
CALML5	0	genome.wustl.edu	37	chr10	5541299	5541299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcccgtggccttcagcgccgCgcccagctcctgggcattga	13	17	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	5541299	5541299	C	T	SNP	CALML5	ENST00000380332	human	ensembl	69_37n	-1	known	missense	c.103	p.A35T	0.033	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML5	HGNC	ENSG00000178372	41	0	0	41	34	45.33	-	-	-	T	5541299	C	T	5541299	3	4	661	1	0	0	0	0	1	0	0	0	2614	768	27	1	341	1	CALML5	10	5541299	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2349380	5541299	129993448	96	56986										
C10orf114	0	genome.wustl.edu	37	chr10	21784544	21784544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aattttcaatctcgcctgtcGaaatcgctagctgcgcatcc	7	13	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	21784544	21784544	G	T	SNP	C10orf114	ENST00000377113	human	ensembl	69_37n	-1	known	missense	c.396	p.F132L	0.004	NULL	NULL	-	no_errors	C10orf114	HGNC	ENSG00000204682	50	0	0	59	21	26.25	-	-	-	T	21784544	G	T	21784544	3	4	661	1	0	0	0	0	1	0	0	0	1595	1049	37	3	18	3	C10orf114	10	21784544	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	16243245	21784544	113750203	97	56987										
COMMD3	0	genome.wustl.edu	37	chr10	22606826	22606826	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	attttagatcatccagacttGaaacatatcgacccagtggt	7	9	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	22606826	22606826	G	A	SNP	COMMD3	ENST00000444869	human	ensembl	69_37n	1	known	missense	c.151	p.E51K	1.000	pfam_HCaRG	pfam_HCaRG	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COMMD3	HGNC	ENSG00000148444	39	0	0	42	12	22.22	-	-	-	A	22606826	G	A	22606826	3	1	661	1	0	0	0	0	1	0	0	0	3747	1281	45	2	159	2	COMMD3	10	22606826	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	822282	22606826	112927921	98	56988										
DNAJC9	0	genome.wustl.edu	37	chr10	75006522	75006522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gagagtcctcgtccactgttCcctgctcatcgtacactgct	8	15	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	75006522	75006522	C	T	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.245	p.G82E	1.000	superfamily_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	59	0	0	79	24	23.3	-	-	-	T	75006522	C	T	75006522	3	4	661	1	0	0	0	0	1	0	0	0	4691	855	30	2	553	2	DNAJC9	10	75006522	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	52399696	75006522	60528225	99	56989										
TTC18	0	genome.wustl.edu	37	chr10	75035266	75035266	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cttggcaaagttcttcttaaGaatgtgtgtttgggccagca	11	7	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	75035266	75035266	G	C	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	missense	c.2821	p.L941V	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	84	0	0	145	28	16.18	-	-	-	C	75035266	G	C	75035266	3	2	661	1	0	0	0	0	1	0	0	0	16782	942	33	2	568	2	TTC18	10	75035266	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	28744	75035266	60499481	100	56990										
KIF20B	0	genome.wustl.edu	37	chr10	91503681	91503681	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cagcgaaccattcagcaactCaaggtaaacagttttgtttt	7	9	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	91503681	91503681	C	G	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	silent	c.4122	p.L1374	0.975	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	55	0	0	61	10	14.08	-	-	-	G	91503681	C	G	91503681	2	3	661	1	0	0	0	0	0	0	0	1	8339	813	29	2		2	KIF20B	10	91503681	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	16468415	91503681	44031066	101	56991										
COL17A1	0	genome.wustl.edu	37	chr10	105812868	105812868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccttctcgccctctctggccCatggggccttccatgccagg	10	18	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	105812868	105812868	C	A	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.1860	p.M620I	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	21	0	0	35	19	35.19	-	-	-	A	105812868	C	A	105812868	3	1	661	1	0	0	0	0	1	0	0	0	3704	594	21	4	2769	4	COL17A1	10	105812868	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	14309187	105812868	29721879	102	56992										
NHLRC2	0	genome.wustl.edu	37	chr10	115614776	115614776	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgcagaaggtggacggctggGagcaggacttgtcagtaccc	16	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	10	115614776	115614776	G	C	SNP	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	missense	c.145	p.E49Q	1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	34	0	0	34	8	19.05	-	-	-	C	115614776	G	C	115614776	3	2	661	1	0	0	0	0	1	0	0	0	10478	1175	41	2	147	2	NHLRC2	10	115614776	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	9801908	115614776	19919971	103	56993										
OR52K2	0	genome.wustl.edu	37	chr11	4470867	4470867	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agataaacttctttgcctgtCtggcccagatgttcttcctt	7	11	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	4470867	4470867	C	G	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	missense	c.298	p.L100V	0.933	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	61	0	0	77	32	29.09	-	-	-	G	4470867	C	G	4470867	3	3	661	1	0	0	0	0	1	0	0	0	11197	912	32	2	300	2	OR52K2	11	4470867	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		4470867	130535649	104	56994										
SCUBE2	0	genome.wustl.edu	37	chr11	9043489	9043489	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cgaactatgtcttcaatgagTtcctggtagtcctctgttgg	10	9	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	9043489	9043489	T	A	SNP	SCUBE2	ENST00000457346	human	ensembl	69_37n	-1	known	missense	c.2868	p.E956D	0.790	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	67	0	0	75	23	23.47	-	-	-	A	9043489	T	A	9043489	3	1	661	1	0	0	0	0	1	0	0	0	14033	1722	60	5	226	5	SCUBE2	11	9043489	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	4572622	9043489	125963027	105	56995										
COPB1	0	genome.wustl.edu	37	chr11	14486547	14486547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atgaggagcaagagtcaaagGagacggcttttccacaagtt	12	7	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	14486547	14486547	G	A	SNP	COPB1	ENST00000249923	human	ensembl	69_37n	-1	known	missense	c.2320	p.P774S	1.000	pfam_Coatomer_bsu_C,pirsf_Coatomer_bsu	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_bsu	-	no_errors	COPB1	HGNC	ENSG00000129083	52	0	0	56	17	23.29	-	-	-	A	14486547	G	A	14486547	3	1	661	1	0	0	0	0	1	0	0	0	3758	1174	41	2	561	2	COPB1	11	14486547	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	5443058	14486547	120519969	106	56996										
MADD	0	genome.wustl.edu	37	chr11	47345270	47345270	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gtaacatcggaacagtgtatGagcgctggtggtacgagaag	15	6	0	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	47345270	47345270	G	C	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.4426	p.E1476Q	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	40	0	0	57	17	22.97	-	-	-	C	47345270	G	C	47345270	3	2	661	1	0	0	0	0	1	0	0	0	9219	1291	45	2	4544	2	MADD	11	47345270	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	32858723	47345270	87661246	107	56997										
PPFIA1	0	genome.wustl.edu	37	chr11	70202291	70202291	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgtttccgagacggataactCatctcaggatgccttgggac	11	10	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	70202291	70202291	C	T	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	missense	c.2513	p.S838L	0.213	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	48	0	0	35	7	16.67	-	-	-	T	70202291	C	T	70202291	3	4	661	1	0	0	0	0	1	0	0	0	12382	838	29	2	2583	2	PPFIA1	11	70202291	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	22857021	70202291	64804225	108	56998										
CNTN5	0	genome.wustl.edu	37	chr11	100095465	100095465	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atgatcaggaacatccttctGatgcatgctgggagatatgg	12	7	2	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	11	100095465	100095465	G	A	SNP	CNTN5	ENST00000279463	human	ensembl	69_37n	1	known	silent	c.1926	p.L642	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN5	HGNC	ENSG00000149972	65	0	0	82	35	29.91	-	-	-	A	100095465	G	A	100095465	2	1	661	1	0	0	0	0	0	0	0	1	3674	1277	45	2		2	CNTN5	11	100095465	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	29893174	100095465	34911051	109	56999										
TNFRSF1A	0	genome.wustl.edu	37	chr12	6443376	6443376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggaccagtccaataacccctGaggggtatattcccaccaac	8	14	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	12	6443376	6443376	G	A	SNP	TNFRSF1A	ENST00000162749	human	ensembl	69_37n	-1	known	missense	c.74	p.S25L	0.000	prints_TNFR_1A	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182	48	0	0	26	13	33.33	-	-	-	A	6443376	G	A	6443376	3	1	661	1	0	0	0	0	1	0	0	0	16388	1294	45	2	1329	2	TNFRSF1A	12	6443376	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		6443376	127408519	110	57000										
ATN1	0	genome.wustl.edu	37	chr12	7043656	7043656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agtagaggaagcctccacccCaaaggtcaacaagcagggtc	11	12	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	12	7043656	7043656	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.194	p.P65L	1.000	pfam_Atrophin-like,prints_Atrophin-1	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	50	0	0	28	28	50	-	-	-	T	7043656	C	T	7043656	3	4	661	1	0	0	0	0	1	0	0	0	1115	594	21	4	204	4	ATN1	12	7043656	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	600280	7043656	126808239	111	57001										
DENND5B	0	genome.wustl.edu	37	chr12	31632974	31632974	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aatgagtccatactgcaggaAgatgaagcatacacactgct	9	9	0	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	12	31632974	31632974	A	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	silent	c.558	p.S186	0.988	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	56	0	0	43	31	41.89	-	-	-	G	31632974	A	G	31632974	2	3	661	1	0	0	0	0	0	0	0	1	4473	59	3	5		5	DENND5B	12	31632974	Silent	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	24589318	31632974	102218921	112	57002										
KRT74	0	genome.wustl.edu	37	chr12	52962061	52962061	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcagcatccgcgccagctccTccttggcctggtgcagggcg	14	16	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	12	52962061	52962061	T	A	SNP	KRT74	ENST00000305620	human	ensembl	69_37n	-1	known	missense	c.1247	p.E416V	1.000	pfam_F	pfam_F,prints_Keratin_II	-	no_errors	KRT74	HGNC	ENSG00000170484	57	0	0	56	18	24.32	-	-	-	A	52962061	T	A	52962061	3	1	661	1	0	0	0	0	1	0	0	0	8540	1551	54	5	354	5	KRT74	12	52962061	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	21329087	52962061	80889834	113	57003										
TBC1D15	0	genome.wustl.edu	37	chr12	72288506	72288506	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tacggcaactatgataggatTttccaaagtcacaaactaca	6	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	12	72288506	72288506	T	A	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	missense	c.749	p.F250Y	1.000	NULL	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	34	0	0	42	16	27.12	-	-	-	A	72288506	T	A	72288506	3	1	661	1	0	0	0	0	1	0	0	0	15696	1841	64	5	903	5	TBC1D15	12	72288506	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	19326445	72288506	61563389	114	57004										
TRIM13	0	genome.wustl.edu	37	chr13	50587116	50587116	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atttgatgacctggcaacttGgaaaggctgtctttcaaact	9	8	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	13	50587116	50587116	G	A	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	nonsense	c.1049	p.W350*	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	51	0	0	22	16	42.11	-	-	-	A	50587116	G	A	50587116	4	1	661	1	0	0	0	0	0	1	0	0	16584	1357	47	4	1055	4	TRIM13	13	50587116	Nonsense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		50587116	64582762	115	57005										
NALCN	0	genome.wustl.edu	37	chr13	102029101	102029101	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	taagtaaatgttccaaacatCtgaactcctaaaattccata	3	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	13	102029101	102029101	C	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.594	p.Q198	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	47	0	0	17	15	46.88	-	-	-	T	102029101	C	T	102029101	2	4	661	1	0	0	0	0	0	0	0	1	10220	912	32	2		2	NALCN	13	102029101	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	51441985	102029101	13140777	116	57006										
ARHGEF7	0	genome.wustl.edu	37	chr13	111955406	111955406	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aaagacctggagaagctggtGaggaaagtcctgaagaacat	13	6	0	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	13	111955406	111955406	G	A	SNP	ARHGEF7	ENST00000370623	human	ensembl	69_37n	1	known	silent	c.2142	p.V714	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CH-domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	44	0	0	32	24	42.86	-	-	-	A	111955406	G	A	111955406	2	1	661	1	0	0	0	0	0	0	0	1	913	1277	45	2		2	ARHGEF7	13	111955406	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	9926305	111955406	3214472	117	57007										
CHD8	0	genome.wustl.edu	37	chr14	21868712	21868712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gacaaatggtctccacatctCgttcagtcatacgtcgcttg	8	12	4	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	21868712	21868712	C	T	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.4430	p.R1477Q	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	57	0	0	38	10	20.83	-	-	-	T	21868712	C	T	21868712	3	4	661	1	0	0	0	0	1	0	0	0	3360	884	31	1	3379	1	CHD8	14	21868712	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		21868712	85480828	118	57008										
MYH7	0	genome.wustl.edu	37	chr14	23885225	23885225	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gtgagtaccttcaacaagctCtggaggctcttgacttgctt	10	10	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	23885225	23885225	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	silent	c.4941	p.Q1647	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	74	0	0	102	36	26.09	-	-	-	T	23885225	C	T	23885225	2	4	661	1	0	0	0	0	0	0	0	1	10111	912	32	2		2	MYH7	14	23885225	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2016513	23885225	83464315	119	57009										
DCAF11	0	genome.wustl.edu	37	chr14	24586891	24586891	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atttagagagaacggggcctCtgccatcggggaagcttctc	13	10	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	24586891	24586891	C	T	SNP	DCAF11	ENST00000558914	human	ensembl	69_37n	1	known	missense	c.371	p.S124F	1.000	NULL	NULL	-	no_errors	DCAF11	HGNC	ENSG00000100897	38	0	0	30	16	34.78	-	-	-	T	24586891	C	T	24586891	3	4	661	1	0	0	0	0	1	0	0	0	4294	900	32	2	440	2	DCAF11	14	24586891	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	701666	24586891	82762649	120	57010										
DCAF11	0	genome.wustl.edu	37	chr14	24587304	24587304	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcttcactgatagctactctCagaaggctttctgtggcatc	9	11	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	24587304	24587304	C	T	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	nonsense	c.517	p.Q173*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	50	0	0	60	18	23.08	-	-	-	T	24587304	C	T	24587304	4	4	661	1	0	0	0	0	0	1	0	0	4294	827	29	2	535	2	DCAF11	14	24587304	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	413	24587304	82762236	121	57011										
TM9SF1	0	genome.wustl.edu	37	chr14	24659852	24659852	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	accacactccacgtcaggaaGaaaggcactgcagggatggg	13	11	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	24659852	24659852	G	A	SNP	TM9SF1	ENST00000556387	human	ensembl	69_37n	-1	known	silent	c.1788	p.F596	1.000	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	22	0	0	28	9	24.32	-	-	-	A	24659852	G	A	24659852	2	1	661	1	0	0	0	0	0	0	0	1	16072	933	33	2		2	TM9SF1	14	24659852	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	72548	24659852	82689688	122	57012										
HECTD1	0	genome.wustl.edu	37	chr14	31604763	31604763	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atataaaattttgtccttctCttaattttcgaacaaaaaca	2	7	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	31604763	31604763	C	T	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.3173	p.R1058K	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	48	0	0	55	18	24.66	-	-	-	T	31604763	C	T	31604763	3	4	661	1	0	0	0	0	1	0	0	0	7090	913	32	2	4751	2	HECTD1	14	31604763	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	6944911	31604763	75744777	123	57013										
SLC35F4	0	genome.wustl.edu	37	chr14	58063474	58063474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccacaccagtgatttatcttCctttctcattttcactaaaa	2	12	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	58063474	58063474	C	T	SNP	SLC35F4	ENST00000339762	human	ensembl	69_37n	-1	known	missense	c.142	p.E48K	0.000	NULL	pfam_DMT,pfam_DUF914_euk	-	no_errors	SLC35F4	HGNC	ENSG00000151812	77	0	0	71	20	21.98	-	-	-	T	58063474	C	T	58063474	3	4	661	1	0	0	0	0	1	0	0	0	14680	864	30	2	1455	2	SLC35F4	14	58063474	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	26458711	58063474	49286066	124	57014										
DACT1	0	genome.wustl.edu	37	chr14	59112495	59112495	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cagagccccgggcggtgtctCacagggcaacagtgtgaacc	14	13	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	59112495	59112495	C	T	SNP	DACT1	ENST00000335867	human	ensembl	69_37n	1	known	missense	c.1154	p.S385L	0.001	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617	16	0	0	20	5	20	-	-	-	T	59112495	C	T	59112495	3	4	661	1	0	0	0	0	1	0	0	0	4254	838	29	2	1168	2	DACT1	14	59112495	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1049021	59112495	48237045	125	57015										
KCNH5	0	genome.wustl.edu	37	chr14	63174898	63174898	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcactggttttcacataggcCagagacgtctgaatgggagt	12	8	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	63174898	63174898	C	A	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	silent	c.2295	p.L765	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	60	0	0	69	15	17.86	-	-	-	A	63174898	C	A	63174898	2	1	661	1	0	0	0	0	0	0	0	1	8089	581	21	4		4	KCNH5	14	63174898	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	4062403	63174898	44174642	126	57016										
RHOJ	0	genome.wustl.edu	37	chr14	63757697	63757697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	attttccaccccaagaaaaaGaagaaacgctgttctgaggg	9	9	1	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	63757697	63757697	G	C	SNP	RHOJ	ENST00000316754	human	ensembl	69_37n	1	known	missense	c.600	p.K200N	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOJ	HGNC	ENSG00000126785	60	0	0	63	26	29.21	-	-	-	C	63757697	G	C	63757697	3	2	661	1	0	0	0	0	1	0	0	0	13425	933	33	2	618	2	RHOJ	14	63757697	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	582799	63757697	43591843	127	57017										
SYNE2	0	genome.wustl.edu	37	chr14	64496652	64496652	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acggtcacgttcgagaacatGattcataccaggtttgcgtc	10	10	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	64496652	64496652	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.6754	p.D2252N	0.843	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	103	0	0	96	22	18.64	-	-	-	A	64496652	G	A	64496652	3	1	661	1	0	0	0	0	1	0	0	0	15538	1290	45	2	6924	2	SYNE2	14	64496652	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	738955	64496652	42852888	128	57018										
SYNE2	0	genome.wustl.edu	37	chr14	64595260	64595260	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcagtgggcagagtgttgctGaacagcttcaggtaatcaag	13	7	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	64595260	64595260	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.14008	p.E4670Q	0.838	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	34	0	0	29	5	14.71	-	-	-	C	64595260	G	C	64595260	3	2	661	1	0	0	0	0	1	0	0	0	15538	1291	45	2	14298	2	SYNE2	14	64595260	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	98608	64595260	42754280	129	57019										
MTHFD1	0	genome.wustl.edu	37	chr14	64879239	64879239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	accaagaacaaccacagaatCtgaggtgagcttttatgagt	9	8	1	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	64879239	64879239	C	G	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.404	p.S135C	0.971	pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	101	0	0	108	33	23.4	-	-	-	G	64879239	C	G	64879239	3	3	661	1	0	0	0	0	1	0	0	0	9999	913	32	2	250	2	MTHFD1	14	64879239	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	283979	64879239	42470301	130	57020										
TRAF3	0	genome.wustl.edu	37	chr14	103363658	103363658	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcatacaaagtttgcacaatCagatatgtagctttgaaatt	7	6	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	103363658	103363658	C	T	SNP	TRAF3	ENST00000392745	human	ensembl	69_37n	1	known	nonsense	c.880	p.Q294*	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323	46	0	0	36	6	14.29	-	-	-	T	103363658	C	T	103363658	4	4	661	1	0	0	0	0	0	1	0	0	16535	827	29	2	910	2	TRAF3	14	103363658	Nonsense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	38484419	103363658	3985882	131	57021										
TRAF3	0	genome.wustl.edu	37	chr14	103369680	103369681	+	Frame_Shift_Ins	INS	-	-	A													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgggaggaagcagacagcatINSgaagagcagcgtggagtccc							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	14	103369680	103369681	-	A	INS	TRAF3	ENST00000392745	human	ensembl	69_37n	1	known	frame_shift_ins	c.1049_1050	p.M350fs	1.000:1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323	32	0	0	48	11	18.64	-	-	-	A	103369681	-	A	103369680	7	5	661	1	0	1	1	0	0	0	0	0	16535	1464	51	0	1083	0	TRAF3	14	103369680	Frame_Shift_Ins	INS	-	TCGA-C8-A274-01A-11D-A16D-09	6022	103369680	3979860	132	57022										
FAM96A	0	genome.wustl.edu	37	chr15	64385865	64385865	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ataaacttctagcgctttctCttccatgatccggggctgcc	8	13	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	15	64385865	64385865	C	G	SNP	FAM96A	ENST00000300030	human	ensembl	69_37n	-1	known	missense	c.103	p.E35Q	1.000	NULL	pfam_DUF59	-	no_errors	FAM96A	HGNC	ENSG00000166797	42	0	0	38	33	46.48	-	-	-	G	64385865	C	G	64385865	3	3	661	1	0	0	0	0	1	0	0	0	5700	922	32	2	399	2	FAM96A	15	64385865	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		64385865	38145527	133	57023										
IMP3	0	genome.wustl.edu	37	chr15	75932283	75932283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcttgtccagcagcgcggccGaagcgcgcacgcggaactgg	16	14	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	15	75932283	75932283	G	A	SNP	IMP3	ENST00000314852	human	ensembl	69_37n	-1	known	missense	c.227	p.S76L	0.975	pfam_Ribosomal_S4/S9_N	pfam_S4_RNA-bd,pfam_Ribosomal_S4/S9_N,smart_S4_RNA-bd,pfscan_S4_RNA-bd	-	no_errors	IMP3	HGNC	ENSG00000177971	9	0	0	4	5	55.56	-	-	-	A	75932283	G	A	75932283	3	1	661	1	0	0	0	0	1	0	0	0	7773	1059	37	1	331	1	IMP3	15	75932283	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	11546418	75932283	26599109	134	57024										
PLK1	0	genome.wustl.edu	37	chr16	23690577	23690577	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	atatccattcaccgcagcctCgcccaccagcacgtcgtagg	8	17	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	23690577	23690577	C	G	SNP	PLK1	ENST00000300093	human	ensembl	69_37n	1	known	silent	c.324	p.L108	0.458	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK1	HGNC	ENSG00000166851	37	0	0	31	12	27.91	-	-	-	G	23690577	C	G	23690577	2	3	661	1	0	0	0	0	0	0	0	1	12168	871	31	3		3	PLK1	16	23690577	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		23690577	66664176	135	57025										
PRKCB	0	genome.wustl.edu	37	chr16	24104239	24104239	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aaaaccatcaaatgctccctCaaccctgagtggaatgagac	7	12	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	24104239	24104239	C	G	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	silent	c.657	p.L219	0.997	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Protein_kinase_C_a/b/g,prints_C2_dom,pfscan_C2_membr_targeting	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	58	0	0	89	20	18.35	-	-	-	G	24104239	C	G	24104239	2	3	661	1	0	0	0	0	0	0	0	1	12589	813	29	2		2	PRKCB	16	24104239	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	413662	24104239	66250514	136	57026										
GTF3C1	0	genome.wustl.edu	37	chr16	27499930	27499930	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aatgtctggagcctcactgtGagtccattctctgcggcagt	11	11	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	27499930	27499930	G	C	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	silent	c.3456	p.L1152	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	43	0	0	67	14	17.28	-	-	-	C	27499930	G	C	27499930	2	2	661	1	0	0	0	0	0	0	0	1	6923	1277	45	2		2	GTF3C1	16	27499930	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	3395691	27499930	62854823	137	57027										
SRCAP	0	genome.wustl.edu	37	chr16	30735726	30735726	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgttggctccatcatcaactCaaactatgctaccagccccg	6	15	3	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	30735726	30735726	C	G	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.4981	p.Q1661E	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	55	0	0	48	17	26.15	-	-	-	G	30735726	C	G	30735726	3	3	661	1	0	0	0	0	1	0	0	0	15226	827	29	2	5071	2	SRCAP	16	30735726	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	3235796	30735726	59619027	138	57028										
CDH8	0	genome.wustl.edu	37	chr16	61935368	61935368	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tttgctcccaggatccaggtCtgtgtgtagctgaaatgaaa	11	8	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	61935368	61935368	C	T	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.262	p.D88N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	69	0	0	39	27	40.91	-	-	-	T	61935368	C	T	61935368	3	4	661	1	0	0	0	0	1	0	0	0	3145	913	32	2	2177	2	CDH8	16	61935368	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	31199642	61935368	28419385	139	57029										
CDH1	0	genome.wustl.edu	37	chr16	68856067	68856068	+	Frame_Shift_Ins	INS	-	-	T													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttcctcccaatacatctcccINSttcacagcagaactaacaca							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	16	68856067	68856068	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1875_1876	p.T626fs	0.997:0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	43	0	0	7	30	81.08	-	-	-	T	68856068	-	T	68856067	7	5	661	1	0	1	1	0	0	0	0	0	3124	668	24	0	1921	0	CDH1	16	68856067	Frame_Shift_Ins	INS	-	TCGA-C8-A274-01A-11D-A16D-09	6920699	68856067	21498686	140	57030										
WDR16	0	genome.wustl.edu	37	chr17	9503393	9503393	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tgcttcttcaggtggatgatGatgatagctttttctacctt	9	7	3	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	9503393	9503393	G	A	SNP	WDR16	ENST00000299764	human	ensembl	69_37n	1	known	missense	c.676	p.D226N	0.995	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596	93	0	0	116	41	25.95	-	-	-	A	9503393	G	A	9503393	3	1	661	1	0	0	0	0	1	0	0	0	17373	1290	45	2	668	2	WDR16	17	9503393	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		9503393	71691817	141	57031										
SRCIN1	0	genome.wustl.edu	37	chr17	36719665	36719665	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gagcttctgcgggaacatgtGcgcgatgagtgcgtgcagcg	17	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	36719665	36719665	G	C	SNP	SRCIN1	ENST00000264659	human	ensembl	69_37n	-1	known	missense	c.634	p.H212D	1.000	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373	24	0	0	26	14	35	-	-	-	C	36719665	G	C	36719665	3	2	661	1	0	0	0	0	1	0	0	0	15227	1319	46	4	2977	4	SRCIN1	17	36719665	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	27216272	36719665	44475545	142	57032										
ERBB2	0	genome.wustl.edu	37	chr17	37880257	37880257	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cccaaagccaacaaagaaatCttagacgtaagcccctccac	5	15	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	37880257	37880257	C	G	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2301	p.I767M	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	69	0	0	54	25	31.65	-	-	-	G	37880257	C	G	37880257	3	3	661	1	0	0	0	0	1	0	0	0	5243	903	32	2	2375	2	ERBB2	17	37880257	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1160592	37880257	43314953	143	57033										
PTRF	0	genome.wustl.edu	37	chr17	40556903	40556903	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tggccctcgcggatcttcttGacgtggaaggtgaagggtgg	17	8	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	40556903	40556903	G	C	SNP	PTRF	ENST00000357037	human	ensembl	69_37n	-1	known	silent	c.975	p.V325	1.000	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469	15	0	0	22	9	29.03	-	-	-	C	40556903	G	C	40556903	2	2	661	1	0	0	0	0	0	0	0	1	12898	1277	45	2		2	PTRF	17	40556903	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	2676646	40556903	40638307	144	57034										
EPX	0	genome.wustl.edu	37	chr17	56272352	56272352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctgtctccaaccagattgtgCgcttccccaatgagagactg	9	13	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	56272352	56272352	C	T	SNP	EPX	ENST00000225371	human	ensembl	69_37n	1	known	missense	c.622	p.R208C	0.883	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	47	0	0	35	15	30	-	-	-	T	56272352	C	T	56272352	3	4	661	1	0	0	0	0	1	0	0	0	5237	768	27	1	644	1	EPX	17	56272352	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	15715449	56272352	24922858	145	57035										
CLTC	0	genome.wustl.edu	37	chr17	57697514	57697514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tggcccagattctgccaattCgttttcaggagcatctccag	9	12	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	57697514	57697514	C	T	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	missense	c.22	p.R8C	1.000	superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	40	0	0	52	10	16.13	-	-	-	T	57697514	C	T	57697514	3	4	661	1	0	0	0	0	1	0	0	0	3596	884	31	1	24	1	CLTC	17	57697514	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1425162	57697514	23497696	146	57036										
PRKCA	0	genome.wustl.edu	37	chr17	64685156	64685156	+	Frame_Shift_Del	DEL	G	G	-													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggaaacatggaactcaggcaGaaattcgaggtgaggataac							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	64685156	64685156	G	-	DEL	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	frame_shift_del	c.909	p.K304fs	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	45	0	0	33	16	32.65	-	-	-	-	64685156	G	-	64685156	7	5	661	1	0	1	0	1	0	0	0	0	12588	933	33	0	939	0	PRKCA	17	64685156	Frame_Shift_Del	DEL	G	TCGA-C8-A274-01A-11D-A16D-09	6987642	64685156	16510054	147	57037										
ABCA5	0	genome.wustl.edu	37	chr17	67286128	67286128	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gccaatcatttttcttgcttCaaacatttcatctatttctg	3	10	6	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	67286128	67286128	C	T	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.1657	p.E553K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	95	0	0	86	39	31.2	-	-	-	T	67286128	C	T	67286128	3	4	661	1	0	0	0	0	1	0	0	0	35	835	29	2	3379	2	ABCA5	17	67286128	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2600972	67286128	13909082	148	57038										
CD300LF	0	genome.wustl.edu	37	chr17	72700695	72700695	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acaccagtaagtgtcagcatCagttttcatgagatcctcca	7	11	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	72700695	72700695	C	T	SNP	CD300LF	ENST00000326165	human	ensembl	69_37n	-1	known	missense	c.304	p.D102N	0.526	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LF	HGNC	ENSG00000186074	76	0	0	94	37	28.24	-	-	-	T	72700695	C	T	72700695	3	4	661	1	0	0	0	0	1	0	0	0	3030	826	29	2	592	2	CD300LF	17	72700695	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	5414567	72700695	8494515	149	57039										
EXOC7	0	genome.wustl.edu	37	chr17	74079730	74079730	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggcagggctagcagcaggctCaggcagaggtgtcgaaaagg	18	8	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	17	74079730	74079730	C	T	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	silent	c.2207	p.*736	0.961	NULL	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	34	0	0	49	10	16.95	-	-	-	T	74079730	C	T	74079730	2	4	661	1	0	0	0	0	0	0	0	1	5346	837	29	2		2	EXOC7	17	74079730	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	1379035	74079730	7115480	150	57040										
THOC1	0	genome.wustl.edu	37	chr18	226824	226824	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttgaatttgacctgccccttGagatattggaataaaatgag	9	6	0	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	18	226824	226824	G	C	SNP	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	silent	c.996	p.L332	1.000	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	66	0	0	49	27	35.53	-	-	-	C	226824	G	C	226824	2	2	661	1	0	0	0	0	0	0	0	1	15959	1277	45	2		2	THOC1	18	226824	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		226824	77850424	151	57041										
NPC1	0	genome.wustl.edu	37	chr18	21119419	21119419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	tcgatccaggacgagggggcGaagcctattcgggtactaga	15	9	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	18	21119419	21119419	G	A	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.1889	p.S630L	0.913	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	21	0	0	17	8	32	-	-	-	A	21119419	G	A	21119419	3	1	661	1	0	0	0	0	1	0	0	0	10642	1049	37	1	1053	1	NPC1	18	21119419	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	20892595	21119419	56957829	152	57042										
SMAD2	0	genome.wustl.edu	37	chr18	45374910	45374910	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttggagagtaaacctaagcaGaacctctctgaatttgatgg	10	7	1	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	18	45374910	45374910	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	missense	c.933	p.F311L	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	64	0	0	40	19	32.2	-	-	-	C	45374910	G	C	45374910	3	2	661	1	0	0	0	0	1	0	0	0	14847	933	33	2	486	2	SMAD2	18	45374910	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	24255491	45374910	32702338	153	57043										
TCF3	0	genome.wustl.edu	37	chr19	1615425	1615425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctcgttgatgtcacggacccGcagccgctcccgggcgttat	12	15	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	1615425	1615425	G	A	SNP	TCF3	ENST00000262965	human	ensembl	69_37n	-1	known	missense	c.1681	p.R561W	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF3	HGNC	ENSG00000071564	37	0	0	39	13	24.53	-	-	-	A	1615425	G	A	1615425	3	1	661	1	0	0	0	0	1	0	0	0	15789	1086	38	1	522	1	TCF3	19	1615425	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		1615425	57513558	154	57044										
MRPL4	0	genome.wustl.edu	37	chr19	10363300	10363300	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cgcccagtgcaggcctgggtCgagtccttgcggggcttcga	16	13	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	10363300	10363300	C	T	SNP	MRPL4	ENST00000253099	human	ensembl	69_37n	1	known	silent	c.198	p.V66	0.992	superfamily_Ribosomal_L4_dom	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	-	no_errors	MRPL4	HGNC	ENSG00000105364	15	0	0	14	7	33.33	-	-	-	T	10363300	C	T	10363300	2	4	661	1	0	0	0	0	0	0	0	1	9875	871	31	1		1	MRPL4	19	10363300	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	8747875	10363300	48765683	155	57045										
CACNA1A	0	genome.wustl.edu	37	chr19	13370494	13370494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cgcgccttcacctcattcttCtcgtagaggaggtatttgcc	9	13	4	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	13370494	13370494	C	G	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.4272	p.E1424D	0.995	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	37	0	0	55	19	25.33	-	-	-	G	13370494	C	G	13370494	3	3	661	1	0	0	0	0	1	0	0	0	2563	912	32	2	3434	2	CACNA1A	19	13370494	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	3007194	13370494	45758489	156	57046										
TMEM59L	0	genome.wustl.edu	37	chr19	18726791	18726791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccttttttcaccagagaaagGtcctggaggctccaagtggg	12	10	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	18726791	18726791	G	T	SNP	TMEM59L	ENST00000262817	human	ensembl	69_37n	1	known	missense	c.415	p.V139F	0.002	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59	-	no_errors	TMEM59L	HGNC	ENSG00000105696	51	0	0	59	16	21.33	-	-	-	T	18726791	G	T	18726791	3	4	661	1	0	0	0	0	1	0	0	0	16281	1261	44	4	429	4	TMEM59L	19	18726791	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	5356297	18726791	40402192	157	57047										
RFXANK	0	genome.wustl.edu	37	chr19	19304852	19304852	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	accccggagaggaggctgcaGatggctcagacactgtggtc	15	11	1	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	19304852	19304852	G	C	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	missense	c.97	p.D33H	0.221	pirsf_DNA-bd_RFXANK	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	56	0	0	58	15	20.55	-	-	-	C	19304852	G	C	19304852	3	2	661	1	0	0	0	0	1	0	0	0	13352	942	33	2	99	2	RFXANK	19	19304852	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	578061	19304852	39824131	158	57048										
ZNF675	0	genome.wustl.edu	37	chr19	23844973	23844973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	caaaggctctttttcttgctCcagacaggtgatcaggtctt	9	10	4	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	23844973	23844973	C	T	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	missense	c.169	p.E57K	0.108	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	118	0	0	217	27	11.02	-	-	-	T	23844973	C	T	23844973	3	4	661	1	0	0	0	0	1	0	0	0	18178	864	30	2	1545	2	ZNF675	19	23844973	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	4540121	23844973	35284010	159	57049										
PRR12	0	genome.wustl.edu	37	chr19	50118164	50118164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttttggggatgcaaaaaatcGgtaccagcgcctctatgtaa	10	8	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	50118164	50118164	G	A	SNP	PRR12	ENST00000418929	human	ensembl	69_37n	1	known	missense	c.4922	p.R1641Q	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	49	0	0	74	9	10.84	-	-	-	A	50118164	G	A	50118164	3	1	661	1	0	0	0	0	1	0	0	0	12665	1116	39	1	4952	1	PRR12	19	50118164	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	26273191	50118164	9010819	160	57050										
AKT1S1	0	genome.wustl.edu	37	chr19	50373175	50373175	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggcgctccctccctggacttCaatatttccgcttcagcttc	7	16	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	50373175	50373175	C	T	SNP	AKT1S1	ENST00000344175	human	ensembl	69_37n	-1	known	silent	c.770	p.*257	1.000	NULL	NULL	-	no_errors	AKT1S1	HGNC	ENSG00000204673	28	0	0	25	6	19.35	-	-	-	T	50373175	C	T	50373175	2	4	661	1	0	0	0	0	0	0	0	1	479	837	29	2		2	AKT1S1	19	50373175	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	255011	50373175	8755808	161	57051										
LILRA2	0	genome.wustl.edu	37	chr19	55086371	55086371	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	attcccatgcccgtgggtggTcctgggccatcttctccgtg	12	14	2	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	55086371	55086371	T	A	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	missense	c.526	p.S176T	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	77	0	0	113	28	19.86	-	-	-	A	55086371	T	A	55086371	3	1	661	1	0	0	0	0	1	0	0	0	8840	1667	58	5	540	5	LILRA2	19	55086371	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	4713196	55086371	4042612	162	57052										
ZNF304	0	genome.wustl.edu	37	chr19	57869175	57869175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gaaagagctcacgagtgcaaCagttttggtggccctttagc	12	9	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	57869175	57869175	C	A	SNP	ZNF304	ENST00000443917	human	ensembl	69_37n	1	known	missense	c.2079	p.N693K	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF304	HGNC	ENSG00000131845	65	0	0	52	28	35	-	-	-	A	57869175	C	A	57869175	3	1	661	1	0	0	0	0	1	0	0	0	17929	477	17	4	1948	4	ZNF304	19	57869175	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	2782804	57869175	1259808	163	57053										
ZNF17	0	genome.wustl.edu	37	chr19	57931692	57931692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aaaggccttatgagtgcagtGaatgtgggaaagcttttctt	12	5	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	19	57931692	57931692	G	C	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.832	p.E278Q	0.012	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	55	0	0	93	21	18.42	-	-	-	C	57931692	G	C	57931692	3	2	661	1	0	0	0	0	1	0	0	0	17839	1291	45	2	842	2	ZNF17	19	57931692	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	62517	57931692	1197291	164	57054										
SLC4A11	0	genome.wustl.edu	37	chr20	3211607	3211607	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ccgtctgtgttctcgtcattGagagacccgaaagcgatggt	12	10	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	20	3211607	3211607	G	C	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	silent	c.1269	p.L423	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	79	0	0	125	25	16.67	-	-	-	C	3211607	G	C	3211607	2	2	661	1	0	0	0	0	0	0	0	1	14741	1277	45	2		2	SLC4A11	20	3211607	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09		3211607	59813913	165	57055										
PIGU	0	genome.wustl.edu	37	chr20	33231980	33231980	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ctacttaccacaactttattGaagtcctggattgcaaaata	5	9	0	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	20	33231980	33231980	G	A	SNP	PIGU	ENST00000217446	human	ensembl	69_37n	-1	known	silent	c.306	p.F102	1.000	NULL	pfam_PIG-U	-	no_errors	PIGU	HGNC	ENSG00000101464	55	0	0	86	18	17.31	-	-	-	A	33231980	G	A	33231980	2	1	661	1	0	0	0	0	0	0	0	1	11974	1281	45	2		2	PIGU	20	33231980	Silent	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	30020373	33231980	29793540	166	57056										
GDAP1L1	0	genome.wustl.edu	37	chr20	42907676	42907676	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ggagccaccctgcaccgcctCaagttcctgggactgtccaa	10	16	1	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	20	42907676	42907676	C	G	SNP	GDAP1L1	ENST00000342560	human	ensembl	69_37n	1	known	silent	c.840	p.L280	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1L1	HGNC	ENSG00000124194	37	0	0	28	11	27.5	-	-	-	G	42907676	C	G	42907676	2	3	661	1	0	0	0	0	0	0	0	1	6359	813	29	2		2	GDAP1L1	20	42907676	Silent	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	9675696	42907676	20117844	167	57057										
NCOA3	0	genome.wustl.edu	37	chr20	46255914	46255914	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	ttcttaagaatttaccaaaaTctacaggtaggcttttaatg	6	6	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	20	46255914	46255914	T	C	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.526	p.S176P	1.000	smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	41	0	0	64	17	20.99	-	-	-	C	46255914	T	C	46255914	3	2	661	1	0	0	0	0	1	0	0	0	10302	1435	50	5	540	5	NCOA3	20	46255914	Missense_Mutation	SNP	T	TCGA-C8-A274-01A-11D-A16D-09	3348238	46255914	16769606	168	57058										
ZFP64	0	genome.wustl.edu	37	chr20	50769283	50769283	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gcacttggctgggctggaggGgcacctggaggtgtcccaca	17	11	0	0			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	20	50769283	50769283	G	C	SNP	ZFP64	ENST00000216923	human	ensembl	69_37n	-1	known	missense	c.1448	p.P483R	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	15	0	0	10	5	33.33	-	-	-	C	50769283	G	C	50769283	3	2	661	1	0	0	0	0	1	0	0	0	17748	1232	43	4	1792	4	ZFP64	20	50769283	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	4513369	50769283	12256237	169	57059										
RUNX1	0	genome.wustl.edu	37	chr21	36252880	36252881	+	Frame_Shift_Ins	INS	-	-	G													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acttcgaccgacaaacctgaINSggtcattaaatcttgcaacc							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	21	36252880	36252881	-	G	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.482_481	p.L161fs	1.000:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	75	0	0	28	51	64.56	-	-	-	G	36252881	-	G	36252880	7	5	661	1	0	1	1	0	0	0	0	0	13832	304	11	0	1013	0	RUNX1	21	36252880	Frame_Shift_Ins	INS	-	TCGA-C8-A274-01A-11D-A16D-09		36252880	11877015	170	57060										
RUNX1	0	genome.wustl.edu	37	chr21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	C													0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cagagtgccatctggaacatINScccctagggccaccacctaa							TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	21	36252994	36252995	-	C	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	64	0	0	75	15	16.67	-	-	-	C	36252995	-	C	36252994	7	5	661	1	0	1	1	0	0	0	0	0	13832	1435	50	0	1127	0	RUNX1	21	36252994	Frame_Shift_Ins	INS	-	TCGA-C8-A274-01A-11D-A16D-09	114	36252994	11876901	171	57061										
TXNRD2	0	genome.wustl.edu	37	chr22	19865914	19865914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cataacactgggatgcatctCgtccagccaccgtgaactcc	8	15	1	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	22	19865914	19865914	C	T	SNP	TXNRD2	ENST00000535882	human	ensembl	69_37n	-1	known	missense	c.1319	p.R440Q	0.897	pfam_Pyr_nucl-diS_OxRdtase_dimer,superfamily_FAD/NAD-linked_Rdtase_dimer,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	33	0	0	14	10	41.67	-	-	-	T	19865914	C	T	19865914	3	4	661	1	0	0	0	0	1	0	0	0	16905	884	31	1	264	1	TXNRD2	22	19865914	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		19865914	31438652	172	57062										
PPIL2	0	genome.wustl.edu	37	chr22	22041956	22041956	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	caaaaacctgcgaaaacttcAtcaggctttgcaagaagcat	7	10	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	22	22041956	22041956	A	T	SNP	PPIL2	ENST00000412327	human	ensembl	69_37n	1	known	missense	c.922	p.I308F	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	67	0	0	39	15	27.27	-	-	-	T	22041956	A	T	22041956	3	4	661	1	0	0	0	0	1	0	0	0	12404	217	8	5	972	5	PPIL2	22	22041956	Missense_Mutation	SNP	A	TCGA-C8-A274-01A-11D-A16D-09	2176042	22041956	29262610	173	57063										
GPR143	0	genome.wustl.edu	37	chrX	9693796	9693796	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	cacatccccttcataggtctCcatgggttgggagagcaggg	13	11	2	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	9693796	9693796	C	A	SNP	GPR143	ENST00000380929	human	ensembl	69_37n	-1	known	missense	c.1265	p.G422V	0.032	pfam_Ocular_alb1	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850	83	0	0	122	49	28.65	-	-	-	A	9693796	C	A	9693796	3	1	661	1	0	0	0	0	1	0	0	0	6701	855	30	2	13	2	GPR143	23	9693796	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09		9693796	145576764	174	57064										
DMD	0	genome.wustl.edu	37	chrX	31496247	31496247	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	actttctcgaggtgatcttgGagagagtcaatgaggagatc	13	6	3	4			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	31496247	31496247	G	C	SNP	DMD	ENST00000465285	human	ensembl	69_37n	-1	novel	missense	c.2098	p.P700A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_EF-hand_dom_typ1,pfam_Spectrin_repeat,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMD	HGNC	ENSG00000198947	34	0	0	39	5	11.11	-	-	-	C	31496247	G	C	31496247	3	2	661	1	0	0	0	0	1	0	0	0	4616	1161	41	2	2342	2	DMD	23	31496247	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	21802451	31496247	123774313	175	57065										
MAGEB16	0	genome.wustl.edu	37	chrX	35820374	35820374	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agcaccttcagaccttcagtGagacccagagcctggaggtt	11	12	2	3			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	35820374	35820374	G	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	missense	c.157	p.E53K	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	19	0	0	19	8	29.63	-	-	-	A	35820374	G	A	35820374	3	1	661	1	0	0	0	0	1	0	0	0	9245	1291	45	2	63	2	MAGEB16	23	35820374	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	4324127	35820374	119450186	176	57066										
TMEM31	0	genome.wustl.edu	37	chrX	102968633	102968633	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	acagaacgatcaaccttcttGaagtccttccgtggcctact	7	13	2	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	102968633	102968633	G	A	SNP	TMEM31	ENST00000319560	human	ensembl	69_37n	1	known	missense	c.214	p.E72K	0.000	NULL	NULL	-	no_errors	TMEM31	HGNC	ENSG00000179363	67	0	0	150	33	17.93	-	-	-	A	102968633	G	A	102968633	3	1	661	1	0	0	0	0	1	0	0	0	16250	1291	45	2	220	2	TMEM31	23	102968633	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	67148259	102968633	52301927	177	57067										
LONRF3	0	genome.wustl.edu	37	chrX	118123497	118123497	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	accacatgaaagaccaggaaGaagaggaggagaagtgggat	15	5	0	5			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	118123497	118123497	G	C	SNP	LONRF3	ENST00000371628	human	ensembl	69_37n	1	known	missense	c.1186	p.E396Q	0.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF3	HGNC	ENSG00000175556	45	0	0	57	12	17.39	-	-	-	C	118123497	G	C	118123497	3	2	661	1	0	0	0	0	1	0	0	0	8962	943	33	2	1200	2	LONRF3	23	118123497	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	15154864	118123497	37147063	178	57068										
PGRMC1	0	genome.wustl.edu	37	chrX	118370396	118370396	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	agagcggcgggctgctgcatGagattttcacgtcgccgctc	14	12	1	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	118370396	118370396	G	A	SNP	PGRMC1	ENST00000217971	human	ensembl	69_37n	1	known	missense	c.70	p.E24K	1.000	NULL	pfam_Cyt_B5,superfamily_Cyt_B5	-	no_errors	PGRMC1	HGNC	ENSG00000101856	25	0	0	19	5	20.83	-	-	-	A	118370396	G	A	118370396	3	1	661	1	0	0	0	0	1	0	0	0	11880	1291	45	2	72	2	PGRMC1	23	118370396	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	246899	118370396	36900164	179	57069										
OCRL	0	genome.wustl.edu	37	chrX	128723903	128723903	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	gagaactcttaaaattctctGaatacaatagcgtcaatgcc	6	9	3	2			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	128723903	128723903	G	A	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.2551	p.E851K	0.943	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	76	0	0	96	32	25	-	-	-	A	128723903	G	A	128723903	3	1	661	1	0	0	0	0	1	0	0	0	10896	1291	45	2	2641	2	OCRL	23	128723903	Missense_Mutation	SNP	G	TCGA-C8-A274-01A-11D-A16D-09	10353507	128723903	26546657	180	57070										
ATP11C	0	genome.wustl.edu	37	chrX	138878432	138878432	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.519337016574586	94	7.35134474133814e-37	4.05871992061523	4.96296419098143	3.51825208085612	0.319158235681325	0.930327025915261	71	aagtaaaacaatgctctaacCtgaccaagttcttcattaag	5	9	3	1			TCGA-C8-A274-01A-11D-A16D-09	TCGA-C8-A274-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e6e7c20-47b3-4f0e-a3c7-8293993e39cf	88dcd89c-7af1-48c2-9973-4ffee5c6ee50	X	138878432	138878432	C	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.1215	p.Q405H	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	27	0	0	52	18	25.71	-	-	-	A	138878432	C	A	138878432	3	1	661	1	0	0	0	0	1	0	0	0	1125	695	24	4	2322	4	ATP11C	23	138878432	Missense_Mutation	SNP	C	TCGA-C8-A274-01A-11D-A16D-09	10154529	138878432	16392128	181	57071										
PRAMEF2	0	genome.wustl.edu	37	chr1	12919911	12919911	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaaattcacaacacgtgctgGccacatctgataagaaagct	8	10	2	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	12919911	12919911	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	1	known	nonsense	c.651	p.W217*	0.016	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	147	0	0	33	9	21.43	-	-	-	A	12919911	G	A	12919911	4	1	662	1	0	0	0	0	0	1	0	0	12513	1212	42	4	657	4	PRAMEF2	1	12919911	Nonsense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		12919911	236330710	1	57072										
HNRNPR	0	genome.wustl.edu	37	chr1	23660097	23660097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctgtcctgtggttacatccaGagtataaccagttctctcaa	7	11	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	23660097	23660097	G	A	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	silent	c.412	p.L138	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	48	0	0	29	17	36.96	-	-	-	A	23660097	G	A	23660097	2	1	662	1	0	0	0	0	0	0	0	1	7323	933	33	2		2	HNRNPR	1	23660097	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	10740186	23660097	225590524	2	57073										
DOCK7	0	genome.wustl.edu	37	chr1	62923257	62923257	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tgtataactgagggatctttCtgttgatcagtggctgtagg	13	5	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	62923257	62923257	C	T	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.6299	p.R2100K	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	174	0	0	84	39	31.71	-	-	-	T	62923257	C	T	62923257	3	4	662	1	0	0	0	0	1	0	0	0	4727	913	32	2	98	2	DOCK7	1	62923257	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	39263160	62923257	186327364	3	57074										
COL24A1	0	genome.wustl.edu	37	chr1	86437030	86437030	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acttcttccatacctgagttCctttgagaccaggaggtcca	8	12	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	86437030	86437030	C	G	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.2411	p.G804A	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	92	0	0	43	10	18.87	-	-	-	G	86437030	C	G	86437030	3	3	662	1	0	0	0	0	1	0	0	0	3713	855	30	2	2893	2	COL24A1	1	86437030	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	23513773	86437030	162813591	4	57075										
SLC30A7	0	genome.wustl.edu	37	chr1	101376704	101376704	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ttattttctcagaaggagttGaggtatagtagataattatt	9	2	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	101376704	101376704	G	C	SNP	SLC30A7	ENST00000357650	human	ensembl	69_37n	1	known	missense	c.382	p.E128Q	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695	206	0	0	89	31	25.62	-	-	-	C	101376704	G	C	101376704	3	2	662	1	0	0	0	0	1	0	0	0	14649	1291	45	2	396	2	SLC30A7	1	101376704	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	14939674	101376704	147873917	5	57076										
WNT2B	0	genome.wustl.edu	37	chr1	113057694	113057694	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctggaccgggaccacaccgtCtttggccgtgtcatgctcag	12	14	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	113057694	113057694	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	silent	c.381	p.V127	1.000	pfam_Wnt,smart_Wnt,prints_Wnt2	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	35	0	0	20	6	23.08	-	-	-	T	113057694	C	T	113057694	2	4	662	1	0	0	0	0	0	0	0	1	17484	900	32	2		2	WNT2B	1	113057694	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	11680990	113057694	136192927	6	57077										
RAB25	0	genome.wustl.edu	37	chr1	156039538	156039538	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctagcctttgagactgtcctGaaaggttagagcctaccttt	9	10	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	156039538	156039538	G	T	SNP	RAB25	ENST00000361084	human	ensembl	69_37n	1	known	silent	c.510	p.L170	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB25	HGNC	ENSG00000132698	77	0	0	42	7	14.29	-	-	-	T	156039538	G	T	156039538	2	4	662	1	0	0	0	0	0	0	0	1	12995	1277	45	2		2	RAB25	1	156039538	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	42981844	156039538	93211083	7	57078										
FCRL5	0	genome.wustl.edu	37	chr1	157514217	157514217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctggtcatctctgaagaagcGgaaccggagcgggacatctg	14	10	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	157514217	157514217	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.679	p.R227C	0.001	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	40	0	0	33	9	21.43	-	-	-	A	157514217	G	A	157514217	3	1	662	1	0	0	0	0	1	0	0	0	5844	1116	39	1	2306	1	FCRL5	1	157514217	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1474679	157514217	91736404	8	57079										
CD1E	0	genome.wustl.edu	37	chr1	158324193	158324193	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aggctctacaatcctatcatCtagcagcagaggagcagctg	10	11	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	158324193	158324193	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	silent	c.85	p.L29	0.000	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	63	0	0	39	17	30.36	-	-	-	T	158324193	C	T	158324193	2	4	662	1	0	0	0	0	0	0	0	1	3007	912	32	2		2	CD1E	1	158324193	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	809976	158324193	90926428	9	57080										
KIAA1383	0	genome.wustl.edu	37	chr1	232943549	232943549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tcatatttcaaagactcaggAtaaaagtttggaggaagcat	9	5	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	1	232943549	232943549	A	G	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	missense	c.2780	p.D927G	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	60	0	0	15	5	25	-	-	-	G	232943549	A	G	232943549	3	3	662	1	0	0	0	0	1	0	0	0	8280	333	12	5	2782	5	KIAA1383	1	232943549	Missense_Mutation	SNP	A	TCGA-C8-A275-01A-21D-A16D-09	74619356	232943549	16307072	10	57081										
SF3B14	0	genome.wustl.edu	37	chr2	24291326	24291326	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cctctagtttcaggtgtgttCcccctggagaggtaagttaa	11	9	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	24291326	24291326	C	T	SNP	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	silent	c.153	p.G51	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	53	0	0	29	16	35.56	-	-	-	T	24291326	C	T	24291326	2	4	662	1	0	0	0	0	0	0	0	1	14238	842	30	2		2	SF3B14	2	24291326	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		24291326	218908047	11	57082										
ITSN2	0	genome.wustl.edu	37	chr2	24433779	24433779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cgagggccagctttagggagGaatggtctgcatggctctcc	15	10	2	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	24433779	24433779	G	T	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.4127	p.S1376Y	0.620	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	44	0	0	36	4	10	-	-	-	T	24433779	G	T	24433779	3	4	662	1	0	0	0	0	1	0	0	0	7981	1174	41	2	994	2	ITSN2	2	24433779	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	142453	24433779	218765594	12	57083										
ADCY3	0	genome.wustl.edu	37	chr2	25042837	25042838	+	Frame_Shift_Del	DEL	AG	AG	-													0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acctggtggggcagtgtgacAgaggggccattggggaaggt							TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	25042837	25042838	AG	-	DEL	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	frame_shift_del	c.3399_3398	p.S1133fs	0.001:0.988	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	32	0	0	14	4	22.22	-	-	-	-	25042838	AG	-	25042837	7	5	662	1	0	1	0	1	0	0	0	0	295	175	7	0	39	0	ADCY3	2	25042837	Frame_Shift_Del	DEL	AG	TCGA-C8-A275-01A-21D-A16D-09	609058	25042837	218156536	13	57084										
WDR43	0	genome.wustl.edu	37	chr2	29169540	29169540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaagaggaagatgaggatgcCgaaggaaaagatgaagaaaa	15	2	0	6			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	29169540	29169540	C	T	SNP	WDR43	ENST00000407426	human	ensembl	69_37n	1	known	silent	c.1929	p.A643	0.000	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811	101	0	0	63	24	27.59	-	-	-	T	29169540	C	T	29169540	2	4	662	1	0	0	0	0	0	0	0	1	17392	639	23	1		1	WDR43	2	29169540	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	4126703	29169540	214029833	14	57085										
TBC1D8	0	genome.wustl.edu	37	chr2	101646084	101646084	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aagaagcagtctaccacattCaccgcactctctagaggcat	7	13	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	101646084	101646084	C	T	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	silent	c.2091	p.V697	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	56	0	0	21	16	43.24	-	-	-	T	101646084	C	T	101646084	2	4	662	1	0	0	0	0	0	0	0	1	15720	813	29	2		2	TBC1D8	2	101646084	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	72476544	101646084	141553289	15	57086										
SCN7A	0	genome.wustl.edu	37	chr2	167330816	167330816	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aagatggaagccgcattgaaTctgaagattgttctattttt	9	5	2	4			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	167330816	167330816	T	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.273	p.R91S	0.998	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	76	0	0	29	11	26.83	-	-	-	A	167330816	T	A	167330816	3	1	662	1	0	0	0	0	1	0	0	0	14011	1432	50	5	4867	5	SCN7A	2	167330816	Missense_Mutation	SNP	T	TCGA-C8-A275-01A-21D-A16D-09	65684732	167330816	75868557	16	57087										
ZAK	0	genome.wustl.edu	37	chr2	173955764	173955764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	actttgtcattatgagatgtCgtctctcggtgcctcctttg	9	10	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	173955764	173955764	C	T	SNP	ZAK	ENST00000375213	human	ensembl	69_37n	1	known	missense	c.5	p.S2L	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	78	0	0	54	20	27.03	-	-	-	T	173955764	C	T	173955764	3	4	662	1	0	0	0	0	1	0	0	0	17609	893	31	1	7	1	ZAK	2	173955764	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	6624948	173955764	69243609	17	57088										
CFLAR	0	genome.wustl.edu	37	chr2	201997758	201997758	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tgtctggtttgcagagtgctGatggcagagattggtgagga	17	4	1	4			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	2	201997758	201997758	G	T	SNP	CFLAR	ENST00000309955	human	ensembl	69_37n	1	known	silent	c.288	p.L96	0.998	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_ICE_p20	-	no_errors	CFLAR	HGNC	ENSG00000003402	121	0	0	53	27	33.75	-	-	-	T	201997758	G	T	201997758	2	4	662	1	0	0	0	0	0	0	0	1	3321	1277	45	2		2	CFLAR	2	201997758	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	28041994	201997758	41201615	18	57089										
ATG7	0	genome.wustl.edu	37	chr3	11421470	11421470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggggatttctttcacggtttGataatgtccttcccgtcagc	10	10	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	3	11421470	11421470	G	C	SNP	ATG7	ENST00000354449	human	ensembl	69_37n	1	known	missense	c.1900	p.D634H	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	-	no_errors	ATG7	HGNC	ENSG00000197548	187	0	0	92	23	19.83	-	-	-	C	11421470	G	C	11421470	3	2	662	1	0	0	0	0	1	0	0	0	1105	1290	45	2	1962	2	ATG7	3	11421470	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		11421470	186600960	19	57090										
SCN10A	0	genome.wustl.edu	37	chr3	38768498	38768498	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctccggggctgtgaggttgtCagcactgaaagagttcaata	13	8	2	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	3	38768498	38768498	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.2686	p.D896N	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	56	0	0	29	14	32.56	-	-	-	T	38768498	C	T	38768498	3	4	662	1	0	0	0	0	1	0	0	0	14000	826	29	2	3232	2	SCN10A	3	38768498	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	27347028	38768498	159253932	20	57091										
WDR52	0	genome.wustl.edu	37	chr3	113152517	113152517	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atctggttccttcatttcctCtgtaagtacaaaatggggat	8	8	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	3	113152517	113152517	C	G	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	splice_site	c.1-1	e1-1	0.003	-	-	-	no_errors	WDR52	HGNC	ENSG00000206530	138	0	0	67	37	35.58	-	-	-	G	113152517	C	G	113152517	5	3	662	1	0	0	0	0	0	0	1	0	17401	927	32	2		2	WDR52	3	113152517	Splice_Site	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	74384019	113152517	84869913	21	57092										
HTR3D	0	genome.wustl.edu	37	chr3	183754563	183754563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atggagaaggatgtccaggaGctttcaaatacatcacagaa	10	7	2	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	3	183754563	183754563	G	T	SNP	HTR3D	ENST00000382489	human	ensembl	69_37n	1	known	missense	c.539	p.S180I	0.003	superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	40	0	0	27	4	12.9	-	-	-	T	183754563	G	T	183754563	3	4	662	1	0	0	0	0	1	0	0	0	7501	971	34	4	693	4	HTR3D	3	183754563	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	70602046	183754563	14267867	22	57093										
FETUB	0	genome.wustl.edu	37	chr3	186370419	186370419	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ccctcttgtccttccgccatGagaatcacacagagtcttct	6	15	4	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	3	186370419	186370419	G	A	SNP	FETUB	ENST00000265029	human	ensembl	69_37n	1	known	silent	c.1148	p.*383	0.294	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512	17	0	0	9	9	50	-	-	-	A	186370419	G	A	186370419	2	1	662	1	0	0	0	0	0	0	0	1	5867	1285	45	2		2	FETUB	3	186370419	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	2615856	186370419	11652011	23	57094										
PRKG2	0	genome.wustl.edu	37	chr4	82027041	82027041	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tccattttttcaattcctttGagaatcaaattgtaggtcat	5	7	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	4	82027041	82027041	G	C	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	silent	c.1989	p.L663	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	127	0	0	43	12	21.82	-	-	-	C	82027041	G	C	82027041	2	2	662	1	0	0	0	0	0	0	0	1	12604	1277	45	2		2	PRKG2	4	82027041	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		82027041	109127235	24	57095										
C4orf45	0	genome.wustl.edu	37	chr4	159894264	159894264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ccactccccagtcttgatttGttgataaaattatactgtgg	7	9	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	4	159894264	159894264	G	T	SNP	C4orf45	ENST00000434826	human	ensembl	69_37n	-1	known	missense	c.264	p.N88K	0.255	NULL	NULL	-	no_errors	C4orf45	HGNC	ENSG00000164123	135	0	0	46	23	33.33	-	-	-	T	159894264	G	T	159894264	3	4	662	1	0	0	0	0	1	0	0	0	2294	1368	48	4	312	4	C4orf45	4	159894264	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	77867223	159894264	31260012	25	57096										
TRIO	0	genome.wustl.edu	37	chr5	14290927	14290927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acaaccacgaagaatggattGaaatcagagttgcttttgaa	9	6	1	4			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	14290927	14290927	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.643	p.E215K	1.000	superfamily_CRAL-TRIO_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	83	0	0	31	10	24.39	-	-	-	A	14290927	G	A	14290927	3	1	662	1	0	0	0	0	1	0	0	0	16648	1291	45	2	661	2	TRIO	5	14290927	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		14290927	166624333	26	57097										
STK32A	0	genome.wustl.edu	37	chr5	146703558	146703558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aacagaacgtccacttcaagGaagaaacagtgaagctcttc	8	10	2	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	146703558	146703558	G	A	SNP	STK32A	ENST00000397936	human	ensembl	69_37n	1	known	missense	c.358	p.E120K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32A	HGNC	ENSG00000169302	45	0	0	36	5	12.2	-	-	-	A	146703558	G	A	146703558	3	1	662	1	0	0	0	0	1	0	0	0	15388	1175	41	2	372	2	STK32A	5	146703558	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	132412631	146703558	34211702	27	57098										
ADRB2	0	genome.wustl.edu	37	chr5	148206482	148206482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acgtcacgcaggaaagggacGaggtgtgggtggtgggcatg	20	6	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	148206482	148206482	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	69_37n	1	known	missense	c.88	p.E30K	1.000	prints_Adrgc_rcpt_B2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrgc_rcpt_B2,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRB2	HGNC	ENSG00000169252	74	0	0	45	15	25	-	-	-	A	148206482	G	A	148206482	3	1	662	1	0	0	0	0	1	0	0	0	341	1059	37	1	90	1	ADRB2	5	148206482	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1502924	148206482	32708778	28	57099										
FAM71B	0	genome.wustl.edu	37	chr5	156593170	156593170	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gtaataaggtaaacaagattCattgctcatggttctcttcg	8	7	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	156593170	156593170	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	missense	c.10	p.E4K	0.866	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	58	0	0	31	10	24.39	-	-	-	T	156593170	C	T	156593170	3	4	662	1	0	0	0	0	1	0	0	0	5653	835	29	2	1815	2	FAM71B	5	156593170	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	8386688	156593170	24322090	29	57100										
DOCK2	0	genome.wustl.edu	37	chr5	169145739	169145739	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gagccaatcctaagaacgctGaaggctttggaatatgtgtt	11	7	0	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	169145739	169145739	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	silent	c.2211	p.L737	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	62	0	0	31	5	13.89	-	-	-	A	169145739	G	A	169145739	2	1	662	1	0	0	0	0	0	0	0	1	4722	1277	45	2		2	DOCK2	5	169145739	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	12552569	169145739	11769521	30	57101										
RANBP17	0	genome.wustl.edu	37	chr5	170319487	170319487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tgctaaaatcactaagttggGgtggtttgaggttcagaaag	13	4	2	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	5	170319487	170319487	G	T	SNP	RANBP17	ENST00000523189	human	ensembl	69_37n	1	known	missense	c.353	p.G118V	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	111	0	0	62	25	28.74	-	-	-	T	170319487	G	T	170319487	3	4	662	1	0	0	0	0	1	0	0	0	13110	1232	43	4	367	4	RANBP17	5	170319487	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1173748	170319487	10595773	31	57102										
SLC35B2	0	genome.wustl.edu	37	chr6	44224198	44224198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cttgggctcattgccaaacaCacaagctttcaccaggggaa	9	12	2	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	44224198	44224198	C	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.241	p.V81M	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	36	0	0	19	6	24	-	-	-	T	44224198	C	T	44224198	3	4	662	1	0	0	0	0	1	0	0	0	14665	478	17	4	1065	4	SLC35B2	6	44224198	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		44224198	126890869	32	57103										
LRRC1	0	genome.wustl.edu	37	chr6	53764633	53764633	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agaaatcagtggcctgacttCattaacggatttagtcattt	8	7	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	53764633	53764633	C	T	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	missense	c.731	p.S244L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	108	0	0	42	13	23.64	-	-	-	T	53764633	C	T	53764633	3	4	662	1	0	0	0	0	1	0	0	0	9032	838	29	2	761	2	LRRC1	6	53764633	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	9540435	53764633	117350434	33	57104										
IBTK	0	genome.wustl.edu	37	chr6	82906055	82906055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atcctgttgtgaaatcagggGactgtaaatctctaggacta	10	7	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	82906055	82906055	G	A	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.3134	p.S1045F	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	91	0	0	47	15	24.19	-	-	-	A	82906055	G	A	82906055	3	1	662	1	0	0	0	0	1	0	0	0	7530	1174	41	2	959	2	IBTK	6	82906055	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	29141422	82906055	88209012	34	57105										
MDN1	0	genome.wustl.edu	37	chr6	90400436	90400436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tctgaactcccgttcttcctCctcctcttcactcagggctg	6	17	5	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	90400436	90400436	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.10705	p.E3569K	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	75	0	0	24	10	29.41	-	-	-	T	90400436	C	T	90400436	3	4	662	1	0	0	0	0	1	0	0	0	9486	864	30	2	6241	2	MDN1	6	90400436	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	7494381	90400436	80714631	35	57106										
SIM1	0	genome.wustl.edu	37	chr6	100896383	100896383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cagaaagatgagcttcatgtCcaggctggcgcggaacataa	12	9	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	100896383	100896383	C	G	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	missense	c.715	p.D239H	1.000	smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	35	0	0	22	4	15.38	-	-	-	G	100896383	C	G	100896383	3	3	662	1	0	0	0	0	1	0	0	0	14412	855	30	2	1609	2	SIM1	6	100896383	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	10495947	100896383	70218684	36	57107										
UTRN	0	genome.wustl.edu	37	chr6	144844314	144844314	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaattaatagaatgtacagtGatcggaaagggtatgtgtaa	12	2	0	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	6	144844314	144844314	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.5896	p.D1966N	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	90	0	0	26	13	33.33	-	-	-	A	144844314	G	A	144844314	3	1	662	1	0	0	0	0	1	0	0	0	17200	1290	45	2	6054	2	UTRN	6	144844314	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	43947931	144844314	26270753	37	57108										
FAM20C	0	genome.wustl.edu	37	chr7	298645	298645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tcgcacgacgagctctccatCctggtgccgctacagcagtg	11	15	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	7	298645	298645	C	G	SNP	FAM20C	ENST00000313766	human	ensembl	69_37n	1	known	missense	c.1479	p.I493M	0.963	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	87	0	0	46	15	24.59	-	-	-	G	298645	C	G	298645	3	3	662	1	0	0	0	0	1	0	0	0	5581	845	30	2		2	FAM20C	7	298645	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		298645	158840018	38	57109										
KBTBD2	0	genome.wustl.edu	37	chr7	32910255	32910255	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agcagcttctcgaacggtttCttccttttctacatttaaat	5	10	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	7	32910255	32910255	C	T	SNP	KBTBD2	ENST00000304056	human	ensembl	69_37n	-1	known	missense	c.574	p.E192K	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852	87	0	0	44	7	13.73	-	-	-	T	32910255	C	T	32910255	3	4	662	1	0	0	0	0	1	0	0	0	8047	922	32	2	1301	2	KBTBD2	7	32910255	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	32611610	32910255	126228408	39	57110										
GBAS	0	genome.wustl.edu	37	chr7	56051543	56051543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggacctaatatatatgaactCaggtcttaccaactccgagt	7	10	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	7	56051543	56051543	C	G	SNP	GBAS	ENST00000415967	human	ensembl	69_37n	1	known	missense	c.289	p.Q97E	0.994	superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GBAS	HGNC	ENSG00000146729	65	0	0	26	10	27.03	-	-	-	G	56051543	C	G	56051543	3	3	662	1	0	0	0	0	1	0	0	0	6319	813	29	2	589	2	GBAS	7	56051543	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	23141288	56051543	103087120	40	57111										
LAMB4	0	genome.wustl.edu	37	chr7	107669499	107669499	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aacagatacctgttattcttCttatcttggcctctgtatct	5	10	5	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	7	107669499	107669499	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.5135	p.R1712K	0.064	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	187	0	0	119	20	14.39	-	-	-	T	107669499	C	T	107669499	3	4	662	1	0	0	0	0	1	0	0	0	8667	913	32	2	158	2	LAMB4	7	107669499	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	51617956	107669499	51469164	41	57112										
MRPS33	0	genome.wustl.edu	37	chr7	140706249	140706249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	actatttcctttttgctgctCttttcccttctcctttcttt	2	13	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	7	140706249	140706249	C	G	SNP	MRPS33	ENST00000324787	human	ensembl	69_37n	-1	known	missense	c.302	p.R101T	1.000	NULL	pfam_Ribosomal_S27/S33_mit	-	no_errors	MRPS33	HGNC	ENSG00000090263	219	0	0	87	38	30.4	-	-	-	G	140706249	C	G	140706249	3	3	662	1	0	0	0	0	1	0	0	0	9914	913	32	2	22	2	MRPS33	7	140706249	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	33036750	140706249	18432414	42	57113										
CSPP1	0	genome.wustl.edu	37	chr8	68005824	68005824	+	Frame_Shift_Del	DEL	G	G	-													0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agaatacaatcagtttctcaGgggtaaggaagaatccagtg							TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	8	68005824	68005824	G	-	DEL	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	frame_shift_del	c.458	p.G154fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	185	0	0	153	24	13.56	-	-	-	-	68005824	G	-	68005824	7	5	662	1	0	1	0	1	0	0	0	0	3994	1000	35	0	589	0	CSPP1	8	68005824	Frame_Shift_Del	DEL	G	TCGA-C8-A275-01A-21D-A16D-09		68005824	78358198	43	57114										
FAM82B	0	genome.wustl.edu	37	chr8	87489536	87489536	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	accttaccttgttctgccctGtgaaagtagcctaaggcctg	9	12	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	8	87489536	87489536	G	A	SNP	FAM82B	ENST00000519789	human	ensembl	69_37n	-1	putative	nonsense	c.583	p.Q195*	0.981	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM82B	HGNC	ENSG00000176623	74	0	0	22	53	70.67	-	-	-	A	87489536	G	A	87489536	4	1	662	1	0	0	0	0	0	1	0	0	5677	1368	48	4	209	4	FAM82B	8	87489536	Nonsense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	19483712	87489536	58874486	44	57115										
OPLAH	0	genome.wustl.edu	37	chr8	145107776	145107776	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	accaaacacctccggcccagTgccgctgaagtcaaacacgg	9	16	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	8	145107776	145107776	T	A	SNP	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	17	0	0	10	14	58.33	-	-	-	A	145107776	T	A	145107776	1	1	662	0	1	0	0	0	0	0	0	0	10949	1696	59	5		5	OPLAH	8	145107776	RNA	SNP	T	TCGA-C8-A275-01A-21D-A16D-09	57618240	145107776	1256246	45	57116										
NUDT2	0	genome.wustl.edu	37	chr9	34343328	34343328	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tccgcctctcccatgagcacCaagcctaccgctggctgggg	11	17	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	34343328	34343328	C	G	SNP	NUDT2	ENST00000337747	human	ensembl	69_37n	1	known	missense	c.334	p.Q112E	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	-	no_errors	NUDT2	HGNC	ENSG00000164978	13	0	0	5	9	64.29	-	-	-	G	34343328	C	G	34343328	3	3	662	1	0	0	0	0	1	0	0	0	10810	595	21	4	340	4	NUDT2	9	34343328	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		34343328	106870103	46	57117										
TJP2	0	genome.wustl.edu	37	chr9	71855021	71855021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gttctcgaaagttatttgatCaagccaacaagcttaaaaaa	6	7	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	71855021	71855021	C	G	SNP	TJP2	ENST00000539225	human	ensembl	69_37n	1	known	missense	c.2617	p.Q873E	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_PDZ,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	68	0	0	21	22	51.16	-	-	-	G	71855021	C	G	71855021	3	3	662	1	0	0	0	0	1	0	0	0	16025	827	29	2	2747	2	TJP2	9	71855021	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	37511693	71855021	69358410	47	57118										
GDA	0	genome.wustl.edu	37	chr9	74810496	74810496	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ccgtgtgaaataagagaactGagccaccagtaagttgttac	10	8	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	74810496	74810496	G	C	SNP	GDA	ENST00000238018	human	ensembl	69_37n	1	known	silent	c.204	p.L68	0.995	tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125	92	0	0	51	11	17.74	-	-	-	C	74810496	G	C	74810496	2	2	662	1	0	0	0	0	0	0	0	1	6357	1277	45	2		2	GDA	9	74810496	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	2955475	74810496	66402935	48	57119										
NCS1	0	genome.wustl.edu	37	chr9	132982059	132982059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gctgtcggtgacctcacgggGaaccctggatgagaagctac	14	11	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	132982059	132982059	G	A	SNP	NCS1	ENST00000372398	human	ensembl	69_37n	1	known	missense	c.284	p.G95E	1.000	pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	NCS1	HGNC	ENSG00000107130	28	0	0	18	24	57.14	-	-	-	A	132982059	G	A	132982059	3	1	662	1	0	0	0	0	1	0	0	0	10312	1174	41	2	312	2	NCS1	9	132982059	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	58171563	132982059	8231372	49	57120										
RALGDS	0	genome.wustl.edu	37	chr9	135977080	135977080	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cgtggtggaggctgaggaggAcgaggtgctgctggaggctg	22	6	0	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	135977080	135977080	A	G	SNP	RALGDS	ENST00000542690	human	ensembl	69_37n	-1	known	missense	c.2494	p.S832P	0.994	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271	59	0	0	39	19	32.76	-	-	-	G	135977080	A	G	135977080	3	3	662	1	0	0	0	0	1	0	0	0	13099	275	10	5	475	5	RALGDS	9	135977080	Missense_Mutation	SNP	A	TCGA-C8-A275-01A-21D-A16D-09	2995021	135977080	5236351	50	57121										
ADAMTS13	0	genome.wustl.edu	37	chr9	136291377	136291377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggggcgtcacccagctgggcGgtgcctgctccccaacctgg	15	16	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	136291377	136291377	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.598	p.G200S	0.920	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	41	0	0	38	9	19.15	-	-	-	A	136291377	G	A	136291377	3	1	662	1	0	0	0	0	1	0	0	0	258	1116	39	1	620	1	ADAMTS13	9	136291377	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	314297	136291377	4922054	51	57122										
FCN2	0	genome.wustl.edu	37	chr9	137772751	137772751	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atggcctgggctctccaggcGgcagacacctgtccaggtaa	13	13	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	137772751	137772751	G	A	SNP	FCN2	ENST00000291744	human	ensembl	69_37n	1	known	silent	c.84	p.A28	0.105	NULL	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN2	HGNC	ENSG00000160339	38	0	0	22	9	29.03	-	-	-	A	137772751	G	A	137772751	2	1	662	1	0	0	0	0	0	0	0	1	5838	1103	39	1		1	FCN2	9	137772751	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1481374	137772751	3440680	52	57123										
NOXA1	0	genome.wustl.edu	37	chr9	140328693	140328693	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cagtggaccaggcatggctgGagggccactgtgacggccgc	17	12	0	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	9	140328693	140328693	G	C	SNP	NOXA1	ENST00000341349	human	ensembl	69_37n	1	known	missense	c.1333	p.E445Q	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_OPR_PB1,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_TPR_repeat,smart_OPR_PB1,smart_SH3_domain,pfscan_SH3_domain,pfscan_TPR-contain_dom	-	no_errors	NOXA1	HGNC	ENSG00000188747	11	0	0	3	7	70	-	-	-	C	140328693	G	C	140328693	3	2	662	1	0	0	0	0	1	0	0	0	10632	1175	41	2	1387	2	NOXA1	9	140328693	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	2555942	140328693	884738	53	57124										
ENKUR	0	genome.wustl.edu	37	chr10	25273745	25273745	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ttcatttcttcttccagcctCtgcttgcggatcttctttgg	7	12	6	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	25273745	25273745	C	G	SNP	ENKUR	ENST00000331161	human	ensembl	69_37n	-1	known	missense	c.684	p.Q228H	0.996	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023	161	0	0	72	20	21.74	-	-	-	G	25273745	C	G	25273745	3	3	662	1	0	0	0	0	1	0	0	0	5157	912	32	2	94	2	ENKUR	10	25273745	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		25273745	110261002	54	57125										
MYO3A	0	genome.wustl.edu	37	chr10	26310566	26310566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	catcccatgagagcactcttCaaaataccaaggtcagatga	7	11	3	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	26310566	26310566	C	G	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	missense	c.720	p.F240L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	54	0	0	27	12	30.77	-	-	-	G	26310566	C	G	26310566	3	3	662	1	0	0	0	0	1	0	0	0	10148	825	29	2	742	2	MYO3A	10	26310566	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	1036821	26310566	109224181	55	57126										
KIAA0913	0	genome.wustl.edu	37	chr10	75552020	75552020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctgaagggggagataaagctCtacataagatgggtccaggt	14	6	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	75552020	75552020	C	G	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.1723	p.L575V	0.113	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	19	0	0	10	4	28.57	-	-	-	G	75552020	C	G	75552020	3	3	662	1	0	0	0	0	1	0	0	0	8252	912	32	2	1761	2	KIAA0913	10	75552020	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	49241454	75552020	59982727	56	57127										
PLAU	0	genome.wustl.edu	37	chr10	75671664	75671664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aaacccatggtcttccatttGagaactagatacgaacaggg	9	9	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	75671664	75671664	G	C	SNP	PLAU	ENST00000446342	human	ensembl	69_37n	1	known	missense	c.15	p.L5F	0.018	NULL	pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861	55	0	0	24	6	20	-	-	-	C	75671664	G	C	75671664	3	2	662	1	0	0	0	0	1	0	0	0	12096	1299	45	2	78	2	PLAU	10	75671664	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	119644	75671664	59863083	57	57128										
BTRC	0	genome.wustl.edu	37	chr10	103292145	103292145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gagtttactgtttacagtatGatgatcagaaaatagtaagc	9	4	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	103292145	103292145	G	A	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	1	known	missense	c.934	p.D312N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	57	0	0	33	15	31.25	-	-	-	A	103292145	G	A	103292145	3	1	662	1	0	0	0	0	1	0	0	0	1578	1290	45	2	964	2	BTRC	10	103292145	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	27620481	103292145	32242602	58	57129										
ADAM12	0	genome.wustl.edu	37	chr10	127726840	127726840	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	taggaatctggcggcttcctCatcaggccttttccaaggtg	11	11	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	10	127726840	127726840	C	T	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.2328	p.M776I	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	46	0	0	17	5	22.73	-	-	-	T	127726840	C	T	127726840	3	4	662	1	0	0	0	0	1	0	0	0	236	826	29	2	417	2	ADAM12	10	127726840	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	24434695	127726840	7807907	59	57130										
PIK3C2A	0	genome.wustl.edu	37	chr11	17124376	17124376	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaatagataaagttctctgaAgcctataaaaaacatacaca	5	7	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	11	17124376	17124376	A	G	SNP	PIK3C2A	ENST00000265970	human	ensembl	69_37n	-1	known	silent	c.3684	p.A1228	0.999	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	41	0	0	22	12	35.29	-	-	-	G	17124376	A	G	17124376	2	3	662	1	0	0	0	0	0	0	0	1	11983	59	3	5		5	PIK3C2A	11	17124376	Silent	SNP	A	TCGA-C8-A275-01A-21D-A16D-09		17124376	117882140	60	57131										
NELL1	0	genome.wustl.edu	37	chr11	20940827	20940827	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cctgcagtgatttcttaagcCtggtgcaaggaataatggat	11	7	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	11	20940827	20940827	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	silent	c.706	p.L236	1.000	NULL	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	133	0	0	80	20	20	-	-	-	T	20940827	C	T	20940827	2	4	662	1	0	0	0	0	0	0	0	1	10405	680	24	4		4	NELL1	11	20940827	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	3816451	20940827	114065689	61	57132										
ZBTB3	0	genome.wustl.edu	37	chr11	62520917	62520917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cagaagcagcccaaaggctgGggctgtgacaatttcattgt	12	9	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	11	62520917	62520917	G	T	SNP	ZBTB3	ENST00000394807	human	ensembl	69_37n	-1	known	missense	c.370	p.P124T	0.987	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	53	0	0	29	4	12.12	-	-	-	T	62520917	G	T	62520917	3	4	662	1	0	0	0	0	1	0	0	0	17630	1232	43	4	1358	4	ZBTB3	11	62520917	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	41580090	62520917	72485599	62	57133										
TMTC1	0	genome.wustl.edu	37	chr12	29709842	29709842	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gttatgctgtggatggagctGgagagccctctgatagtaca	14	7	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	12	29709842	29709842	G	A	SNP	TMTC1	ENST00000256062	human	ensembl	69_37n	-1	known	nonsense	c.1300	p.Q434*	0.993	pfam_PIK-rel_kinase_FAT,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	163	0	0	69	37	34.91	-	-	-	A	29709842	G	A	29709842	4	1	662	1	0	0	0	0	0	1	0	0	16355	1357	47	4	1060	4	TMTC1	12	29709842	Nonsense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		29709842	104142053	63	57134										
ANO6	0	genome.wustl.edu	37	chr12	45741997	45741997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acgaaagcatcatcaagccaGagcaagagtttttcactgcc	8	11	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	12	45741997	45741997	G	C	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.532	p.E178Q	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	105	0	0	53	9	14.52	-	-	-	C	45741997	G	C	45741997	3	2	662	1	0	0	0	0	1	0	0	0	700	943	33	2	570	2	ANO6	12	45741997	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	16032155	45741997	88109898	64	57135										
PPFIA2	0	genome.wustl.edu	37	chr12	81657056	81657056	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ccagaggttgtggttaacctAaatccagctggtaatgtttc	10	8	0	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	12	81657056	81657056	A	G	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	silent	c.3669	p.F1223	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	99	0	0	48	14	22.58	-	-	-	G	81657056	A	G	81657056	2	3	662	1	0	0	0	0	0	0	0	1	12383	359	13	5		5	PPFIA2	12	81657056	Silent	SNP	A	TCGA-C8-A275-01A-21D-A16D-09	35915059	81657056	52194839	65	57136										
RB1	0	genome.wustl.edu	37	chr13	49050875	49050875	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aaaataaatcagatggtatgTaacagcgaccgtgtgctcaa	9	7	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	13	49050875	49050875	T	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.2559	p.C853*	1.000	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	67	0	0	19	31	62	-	-	-	A	49050875	T	A	49050875	4	1	662	1	0	0	0	0	0	1	0	0	13181	1644	57	5	2657	5	RB1	13	49050875	Nonsense_Mutation	SNP	T	TCGA-C8-A275-01A-21D-A16D-09		49050875	66119003	66	57137										
OR4Q3	0	genome.wustl.edu	37	chr14	20215639	20215639	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atttgttcttctgggcctatCatcttcttgggagctgcagc	10	10	5	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	14	20215639	20215639	C	G	SNP	OR4Q3	ENST00000331723	human	ensembl	69_37n	1	known	nonsense	c.53	p.S18*	0.884	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	218	0	0	103	31	23.13	-	-	-	G	20215639	C	G	20215639	4	3	662	1	0	0	0	0	0	1	0	0	11154	838	29	2	55	2	OR4Q3	14	20215639	Nonsense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		20215639	87133901	67	57138										
PPP2R3C	0	genome.wustl.edu	37	chr14	35579802	35579802	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agctcttgattcctctcttaAtttctgtagtaagacttcat	5	9	4	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	14	35579802	35579802	A	C	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.220	p.L74V	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	150	0	0	72	20	21.74	-	-	-	C	35579802	A	C	35579802	3	2	662	1	0	0	0	0	1	0	0	0	12467	98	4	5	1185	5	PPP2R3C	14	35579802	Missense_Mutation	SNP	A	TCGA-C8-A275-01A-21D-A16D-09	15364163	35579802	71769738	68	57139										
MAP3K9	0	genome.wustl.edu	37	chr14	71199275	71199275	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cctgctccaggactggggctCaacccattgctggaggggct	14	13	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	14	71199275	71199275	C	G	SNP	MAP3K9	ENST00000555993	human	ensembl	69_37n	-1	known	missense	c.2853	p.L951F	0.894	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	55	0	0	26	11	29.73	-	-	-	G	71199275	C	G	71199275	3	3	662	1	0	0	0	0	1	0	0	0	9328	825	29	2	511	2	MAP3K9	14	71199275	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	35619473	71199275	36150265	69	57140										
DYNC1H1	0	genome.wustl.edu	37	chr14	102474586	102474586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tttgacgagttcaaccgcctGgaggagcggatgctctcggc	14	11	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	14	102474586	102474586	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	silent	c.5889	p.L1963	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	47	0	0	30	14	31.11	-	-	-	A	102474586	G	A	102474586	2	1	662	1	0	0	0	0	0	0	0	1	4876	1335	47	4		4	DYNC1H1	14	102474586	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	31275311	102474586	4874954	70	57141										
PLA2G4E	0	genome.wustl.edu	37	chr15	42292464	42292464	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tcaaaggattcgttcaccatCaccaggaggtccttcactgg	9	12	4	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	15	42292464	42292464	C	T	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	silent	c.603	p.V201	1.000	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	62	0	0	35	7	16.67	-	-	-	T	42292464	C	T	42292464	2	4	662	1	0	0	0	0	0	0	0	1	12079	813	29	2		2	PLA2G4E	15	42292464	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		42292464	60238928	71	57142										
BNC1	0	genome.wustl.edu	37	chr15	83933256	83933256	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agtgcaggaggcagagggttGaagaactggaaaggcagcat	17	5	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	15	83933256	83933256	G	A	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	silent	c.747	p.F249	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	59	0	0	30	14	31.82	-	-	-	A	83933256	G	A	83933256	2	1	662	1	0	0	0	0	0	0	0	1	1479	1281	45	2		2	BNC1	15	83933256	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	41640792	83933256	18598136	72	57143										
SYNM	0	genome.wustl.edu	37	chr15	99666992	99666992	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tgagcacgttgaaaacatgcCgtcaggtaagtaaaagctaa	10	7	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	15	99666992	99666992	C	G	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	missense	c.998	p.P333R	0.469	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	81	0	0	34	5	12.82	-	-	-	G	99666992	C	G	99666992	3	3	662	1	0	0	0	0	1	0	0	0	15547	652	23	3	1010	3	SYNM	15	99666992	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	15733736	99666992	2864400	73	57144										
ERN2	0	genome.wustl.edu	37	chr16	23702226	23702226	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gtagggcaggaagaggctctCagaggcgcagctcctcatgg	16	10	2	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	16	23702226	23702226	C	G	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.2851	p.E951Q	0.998	pfam_KEN_RNase_activator	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	46	0	0	18	5	21.74	-	-	-	G	23702226	C	G	23702226	3	3	662	1	0	0	0	0	1	0	0	0	5275	835	29	2	77	2	ERN2	16	23702226	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		23702226	66652527	74	57145										
ITGAM	0	genome.wustl.edu	37	chr16	31341642	31341642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tccccagaactgctccatcgCtgtctgccagagaatccagt	8	15	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	16	31341642	31341642	C	T	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	missense	c.3077	p.A1026V	0.723	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	46	0	0	13	6	31.58	-	-	-	T	31341642	C	T	31341642	3	4	662	1	0	0	0	0	1	0	0	0	7941	797	28	4	3183	4	ITGAM	16	31341642	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	7639416	31341642	59013111	75	57146										
ACAP1	0	genome.wustl.edu	37	chr17	7247037	7247037	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gtcctcagatcaacgtgattGaggacaagaggaagtttgac	12	7	2	5			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	7247037	7247037	G	C	SNP	ACAP1	ENST00000158762	human	ensembl	69_37n	1	known	missense	c.541	p.E181Q	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818	164	1	0.6	37	42	52.5	-	-	-	C	7247037	G	C	7247037	3	2	662	1	0	0	0	0	1	0	0	0	118	1291	45	2	567	2	ACAP1	17	7247037	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		7247037	73948173	76	57147										
TP53	0	genome.wustl.edu	37	chr17	7577141	7577141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gcacctcaaagctgttccgtCccagtagattaccactactc	6	15	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	7577141	7577141	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.797	p.G266E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	62	0	0	11	8	42.11	-	-	-	T	7577141	C	T	7577141	3	4	662	1	0	0	0	0	1	0	0	0	16477	855	30	2	489	2	TP53	17	7577141	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	330104	7577141	73618069	77	57148										
SAMD14	0	genome.wustl.edu	37	chr17	48195601	48195601	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaagcctggagcgggatggcCggtgtctccggcccttggcc	17	13	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	48195601	48195601	C	G	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.134	p.R45P	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	27	0	0	90	27	23.08	-	-	-	G	48195601	C	G	48195601	3	3	662	1	0	0	0	0	1	0	0	0	13905	652	23	3	1239	3	SAMD14	17	48195601	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	40618460	48195601	32999609	78	57149										
AKAP1	0	genome.wustl.edu	37	chr17	55183786	55183786	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aggagggcttggatagaaatGaggagggcttggatagaaat	17	2	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	55183786	55183786	G	C	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	missense	c.961	p.E321Q	0.002	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	91	0	0	210	24	10.26	-	-	-	C	55183786	G	C	55183786	3	2	662	1	0	0	0	0	1	0	0	0	445	1291	45	2	963	2	AKAP1	17	55183786	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	6988185	55183786	26011424	79	57150										
MPO	0	genome.wustl.edu	37	chr17	56350265	56350265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggccatgaggccccggaggaTggggtcaatgccacctgggg	18	11	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	56350265	56350265	T	C	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	missense	c.1732	p.I578V	0.797	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	20	0	0	57	10	14.93	-	-	-	C	56350265	T	C	56350265	3	2	662	1	0	0	0	0	1	0	0	0	9804	1464	51	5	613	5	MPO	17	56350265	Missense_Mutation	SNP	T	TCGA-C8-A275-01A-21D-A16D-09	1166479	56350265	24844945	80	57151										
YPEL2	0	genome.wustl.edu	37	chr17	57430827	57430827	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tatctgccctcctgccaccgGacctacagctgcattcactg	7	17	2	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	57430827	57430827	G	A	SNP	YPEL2	ENST00000312655	human	ensembl	69_37n	1	known	silent	c.57	p.R19	0.990	pfam_Yippee	pfam_Yippee	-	no_errors	YPEL2	HGNC	ENSG00000175155	52	0	0	182	38	17.27	-	-	-	A	57430827	G	A	57430827	2	1	662	1	0	0	0	0	0	0	0	1	17587	1161	41	2		2	YPEL2	17	57430827	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1080562	57430827	23764383	81	57152										
CACNG4	0	genome.wustl.edu	37	chr17	65026607	65026607	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agtaacatcatcggtatcatCgtctacatttccagcaacac	5	12	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	65026607	65026607	C	T	SNP	CACNG4	ENST00000262138	human	ensembl	69_37n	1	known	silent	c.471	p.I157	0.997	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461	58	0	0	30	5	14.29	-	-	-	T	65026607	C	T	65026607	2	4	662	1	0	0	0	0	0	0	0	1	2584	874	31	1		1	CACNG4	17	65026607	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	7595780	65026607	16168603	82	57153										
FAM20A	0	genome.wustl.edu	37	chr17	66538848	66538848	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	actctacctggagagacaaaGaaaacactctgcaggatttc	8	10	2	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	17	66538848	66538848	G	C	SNP	FAM20A	ENST00000592554	human	ensembl	69_37n	-1	known	missense	c.915	p.F305L	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20A	HGNC	ENSG00000108950	129	0	0	66	18	21.43	-	-	-	C	66538848	G	C	66538848	3	2	662	1	0	0	0	0	1	0	0	0	5579	933	33	2	734	2	FAM20A	17	66538848	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1512241	66538848	14656362	83	57154										
OR2Z1	0	genome.wustl.edu	37	chr19	8841852	8841852	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tcctgggtggtaggtgtgctCaacgcctccatccagacctc	11	14	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	8841852	8841852	C	G	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	silent	c.462	p.L154	0.025	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	69	0	0	49	20	28.99	-	-	-	G	8841852	C	G	8841852	2	3	662	1	0	0	0	0	0	0	0	1	11109	813	29	2		2	OR2Z1	19	8841852	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		8841852	50287131	84	57155										
CCDC151	0	genome.wustl.edu	37	chr19	11537068	11537068	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctctcgaaccaaggtctcctCtaggtactgcagctggttct	9	13	4	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	11537068	11537068	C	G	SNP	CCDC151	ENST00000356392	human	ensembl	69_37n	-1	known	missense	c.859	p.E287Q	1.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003	59	0	0	33	10	22.73	-	-	-	G	11537068	C	G	11537068	3	3	662	1	0	0	0	0	1	0	0	0	2811	922	32	2	956	2	CCDC151	19	11537068	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	2695216	11537068	47591915	85	57156										
ZNF799	0	genome.wustl.edu	37	chr19	12501963	12501963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acatttatagggtttctctgCagtgtgagtcttttcatgcc	9	8	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	12501963	12501963	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	missense	c.1249	p.A417T	0.950	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	117	0	0	42	13	23.64	-	-	-	T	12501963	C	T	12501963	3	4	662	1	0	0	0	0	1	0	0	0	18259	710	25	4	686	4	ZNF799	19	12501963	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	964895	12501963	46627020	86	57157										
ZNF569	0	genome.wustl.edu	37	chr19	37904775	37904775	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gcttctctccagtatgaattCtttgatgtctaatgagattt	7	7	3	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	37904775	37904775	C	G	SNP	ZNF569	ENST00000316950	human	ensembl	69_37n	-1	known	missense	c.785	p.R262T	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	86	0	0	82	19	18.81	-	-	-	G	37904775	C	G	37904775	3	3	662	1	0	0	0	0	1	0	0	0	18096	913	32	2	1279	2	ZNF569	19	37904775	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	25402812	37904775	21224208	87	57158										
FAM98C	0	genome.wustl.edu	37	chr19	38895681	38895681	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	caagaactggaccttaccctCcaagccctggggctgcccag	10	16	0	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	38895681	38895681	C	G	SNP	FAM98C	ENST00000252530	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.536	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	28	0	0	46	13	22.03	-	-	-	G	38895681	C	G	38895681	2	3	662	1	0	0	0	0	0	0	0	1	5704	842	30	2		2	FAM98C	19	38895681	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	990906	38895681	20233302	88	57159										
PSG5	0	genome.wustl.edu	37	chr19	43690498	43690498	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaagttctctcctcacctgtGagcaggagccccttccaggt	10	14	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	43690498	43690498	G	A	SNP	PSG5	ENST00000342951	human	ensembl	69_37n	-1	known	silent	c.60	p.L20	0.062	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG5	HGNC	ENSG00000204941	142	0	0	104	37	26.24	-	-	-	A	43690498	G	A	43690498	2	1	662	1	0	0	0	0	0	0	0	1	12738	1277	45	2		2	PSG5	19	43690498	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	4794817	43690498	15438485	89	57160										
PHLDB3	0	genome.wustl.edu	37	chr19	44006383	44006383	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctcgcaccccttcccgcgaaGaggtggatgcgggaggtgtg	16	12	0	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	44006383	44006383	G	C	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	missense	c.266	p.S89C	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	29	0	0	28	6	17.65	-	-	-	C	44006383	G	C	44006383	3	2	662	1	0	0	0	0	1	0	0	0	11927	942	33	2	1712	2	PHLDB3	19	44006383	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	315885	44006383	15122600	90	57161										
CCDC8	0	genome.wustl.edu	37	chr19	46914605	46914605	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctctccggcgcttgcaaaacCacgaaaagcgtccaggggtc	11	14	1	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	46914605	46914605	C	A	SNP	CCDC8	ENST00000307522	human	ensembl	69_37n	-1	known	missense	c.1463	p.W488L	0.995	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515	36	0	0	96	26	21.31	-	-	-	A	46914605	C	A	46914605	3	1	662	1	0	0	0	0	1	0	0	0	2880	595	21	4	157	4	CCDC8	19	46914605	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	2908222	46914605	12214378	91	57162										
NLRP12	0	genome.wustl.edu	37	chr19	54304506	54304506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggtctggagcttgcacgtggGatgcctgaggccctcacaca	14	12	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	54304506	54304506	G	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	missense	c.2734	p.P912T	0.759	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	42	0	0	36	21	36.84	-	-	-	T	54304506	G	T	54304506	3	4	662	1	0	0	0	0	1	0	0	0	10546	1174	41	2	470	2	NLRP12	19	54304506	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	7389901	54304506	4824477	92	57163										
NLRP12	0	genome.wustl.edu	37	chr19	54310781	54310781	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agtttgcagttggggtgtctGagtccttgacagagcagctt	14	7	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	19	54310781	54310781	G	C	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	silent	c.2214	p.L738	0.289	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	62	0	0	38	11	22.45	-	-	-	C	54310781	G	C	54310781	2	2	662	1	0	0	0	0	0	0	0	1	10546	1277	45	2		2	NLRP12	19	54310781	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	6275	54310781	4818202	93	57164										
SPTLC3	0	genome.wustl.edu	37	chr20	13029712	13029712	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggaaccctgtttggctatctCagagactttttaagaaactg	9	8	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	20	13029712	13029712	C	G	SNP	SPTLC3	ENST00000399002	human	ensembl	69_37n	1	known	silent	c.237	p.L79	1.000	NULL	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC3	HGNC	ENSG00000172296	104	0	0	35	17	32.69	-	-	-	G	13029712	C	G	13029712	2	3	662	1	0	0	0	0	0	0	0	1	15216	813	29	2		2	SPTLC3	20	13029712	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		13029712	49995808	94	57165										
GGTLC1	0	genome.wustl.edu	37	chr20	23966380	23966380	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ggggctcctccacggcccacTtcacgtcatagccgaaccag	10	17	2	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	20	23966380	23966380	T	G	SNP	GGTLC1	ENST00000278765	human	ensembl	69_37n	-1	known	missense	c.455	p.K152T	1.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435	107	0	0	47	13	21.67	-	-	-	G	23966380	T	G	23966380	3	3	662	1	0	0	0	0	1	0	0	0	6417	1609	56	5	230	5	GGTLC1	20	23966380	Missense_Mutation	SNP	T	TCGA-C8-A275-01A-21D-A16D-09	10936668	23966380	39059140	95	57166										
SLCO4A1	0	genome.wustl.edu	37	chr20	61299501	61299501	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gttgtaattttctttacattCctcagcagcattcctgcact	5	11	2	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	20	61299501	61299501	C	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	69_37n	1	known	silent	c.1776	p.F592	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187	113	0	0	44	16	26.67	-	-	-	T	61299501	C	T	61299501	2	4	662	1	0	0	0	0	0	0	0	1	14818	854	30	2		2	SLCO4A1	20	61299501	Silent	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	37333121	61299501	1726019	96	57167										
NRIP1	0	genome.wustl.edu	37	chr21	16337186	16337186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agctttcgtttctgcagtagGaagtaactcttctttggctg	10	8	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	21	16337186	16337186	G	A	SNP	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	missense	c.3328	p.P1110S	0.992	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	110	0	0	55	15	21.43	-	-	-	A	16337186	G	A	16337186	3	1	662	1	0	0	0	0	1	0	0	0	10725	1174	41	2	152	2	NRIP1	21	16337186	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09		16337186	31792709	97	57168										
SMC1B	0	genome.wustl.edu	37	chr22	45755687	45755687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agtcatttgctagaatacctCcacttcaatgatgtcatcca	5	11	3	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	22	45755687	45755687	C	T	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	missense	c.2860	p.E954K	1.000	pfam_RecF/RecN/SMC,superfamily_t-SNARE	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	92	0	0	31	11	26.19	-	-	-	T	45755687	C	T	45755687	3	4	662	1	0	0	0	0	1	0	0	0	14871	864	30	2	879	2	SMC1B	22	45755687	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		45755687	5548879	98	57169										
PKDREJ	0	genome.wustl.edu	37	chr22	46653441	46653441	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaccgaaatgctacagaacaGatttatatctggattaaaag	8	6	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	22	46653441	46653441	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.5779	p.L1927	0.004	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	121	0	0	53	30	35.71	-	-	-	A	46653441	G	A	46653441	2	1	662	1	0	0	0	0	0	0	0	1	12044	933	33	2		2	PKDREJ	22	46653441	Silent	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	897754	46653441	4651125	99	57170										
PKDREJ	0	genome.wustl.edu	37	chr22	46655016	46655016	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	aaagaacataatgttacaaaGaagagagctaagcaacattg	8	5	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	22	46655016	46655016	G	C	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	missense	c.4204	p.L1402V	0.001	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	57	0	0	30	8	21.05	-	-	-	C	46655016	G	C	46655016	3	2	662	1	0	0	0	0	1	0	0	0	12044	942	33	2	2561	2	PKDREJ	22	46655016	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	1575	46655016	4649550	100	57171										
DMD	0	genome.wustl.edu	37	chrX	32380914	32380914	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gatcttcctacctttccagtCttaattctgtgtgaaatggc	7	10	3	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	32380914	32380914	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5316	p.K1772N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	113	0	0	36	14	28	-	-	-	G	32380914	C	G	32380914	3	3	662	1	0	0	0	0	1	0	0	0	4616	912	32	2	6061	2	DMD	23	32380914	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09		32380914	122889646	101	57172										
CFP	0	genome.wustl.edu	37	chrX	47485763	47485763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gctgtagcagtgccggatatCctgctgttgcccggcacatc	12	13	0	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	47485763	47485763	C	T	SNP	CFP	ENST00000247153	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366N	0.050	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	42	0	0	17	7	29.17	-	-	-	T	47485763	C	T	47485763	3	4	662	1	0	0	0	0	1	0	0	0	3322	855	30	2	325	2	CFP	23	47485763	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	15104849	47485763	107784797	102	57173										
GNL3L	0	genome.wustl.edu	37	chrX	54574726	54574726	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gaaaagcaaagcctgctttgGagctgaaaacctcatgaggg	12	8	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	54574726	54574726	G	C	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.695	p.G232A	1.000	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	108	0	0	43	17	28.33	-	-	-	C	54574726	G	C	54574726	3	2	662	1	0	0	0	0	1	0	0	0	6590	1174	41	2	725	2	GNL3L	23	54574726	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	7088963	54574726	100695834	103	57174										
AWAT1	0	genome.wustl.edu	37	chrX	69459634	69459634	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	gggaaactgaggtgtatgatCaggtgctgttccataaggat	14	5	1	2			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	69459634	69459634	C	G	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	1	known	missense	c.682	p.Q228E	1.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	140	0	0	65	21	24.42	-	-	-	G	69459634	C	G	69459634	3	3	662	1	0	0	0	0	1	0	0	0	1238	827	29	2	704	2	AWAT1	23	69459634	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	14884908	69459634	85810926	104	57175										
SLC7A3	0	genome.wustl.edu	37	chrX	70148349	70148349	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	catggccaattcgtagtcctCttctgtgagcttccagttgt	9	11	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	70148349	70148349	C	T	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	missense	c.664	p.E222K	0.033	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	50	0	0	29	5	14.71	-	-	-	T	70148349	C	T	70148349	3	4	662	1	0	0	0	0	1	0	0	0	14787	922	32	2	1231	2	SLC7A3	23	70148349	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	688715	70148349	85122211	105	57176										
ACRC	0	genome.wustl.edu	37	chrX	70832261	70832261	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	atgctgcctcctggctgattGatggtatccatgattctcat	9	10	1	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	70832261	70832261	G	C	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.1807	p.D603H	0.237	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	73	0	0	27	10	27.03	-	-	-	C	70832261	G	C	70832261	3	2	662	1	0	0	0	0	1	0	0	0	171	1290	45	2	1849	2	ACRC	23	70832261	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	683912	70832261	84438299	106	57177										
CXCR3	0	genome.wustl.edu	37	chrX	70837215	70837215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	agggcggggaggtacagcacGagtcactctcgttttctcca	13	11	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	70837215	70837215	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.248	p.S83L	0.000	prints_Chemokine_CXCR3	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	74	0	0	23	17	42.5	-	-	-	A	70837215	G	A	70837215	3	1	662	1	0	0	0	0	1	0	0	0	4123	1059	37	1	1003	1	CXCR3	23	70837215	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	4954	70837215	84433345	107	57178										
PCDH19	0	genome.wustl.edu	37	chrX	99551396	99551396	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	ctccacggggctcagcttcaGagggacgagtagggccattg	15	11	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	99551396	99551396	G	C	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.3326	p.S1109C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	84	0	0	32	6	15.38	-	-	-	C	99551396	G	C	99551396	3	2	662	1	0	0	0	0	1	0	0	0	11587	942	33	2	124	2	PCDH19	23	99551396	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	28714181	99551396	55719164	108	57179										
FGF13	0	genome.wustl.edu	37	chrX	137715074	137715074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	acgccagagacacttctgctCttggttggggtcccgcttcc	11	14	2	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	137715074	137715074	C	G	SNP	FGF13	ENST00000370603	human	ensembl	69_37n	-1	known	missense	c.705	p.K235N	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	108	0	0	44	21	32.31	-	-	-	G	137715074	C	G	137715074	3	3	662	1	0	0	0	0	1	0	0	0	5888	912	32	2	66	2	FGF13	23	137715074	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	38163678	137715074	17555486	109	57180										
MAGEC3	0	genome.wustl.edu	37	chrX	140983304	140983304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cagacaggaagatggccgccGagggctgaccgaggcgtccc	16	13	0	3			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	140983304	140983304	G	A	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.1082	p.R361Q	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	33	0	0	17	9	34.62	-	-	-	A	140983304	G	A	140983304	3	1	662	1	0	0	0	0	1	0	0	0	9253	1058	37	1	1104	1	MAGEC3	23	140983304	Missense_Mutation	SNP	G	TCGA-C8-A275-01A-21D-A16D-09	3268230	140983304	14287256	110	57181										
HCFC1	0	genome.wustl.edu	37	chrX	153223547	153223547	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	cttggtgaccccgcccacaaCtgtggtcaccacctgggctt	10	16	1	1			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	153223547	153223547	C	G	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1957	p.V653L	0.986	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	31	0	0	21	10	32.26	-	-	-	G	153223547	C	G	153223547	3	3	662	1	0	0	0	0	1	0	0	0	7042	565	20	4	4214	4	HCFC1	23	153223547	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	12240243	153223547	2047013	111	57182										
OPN1LW	0	genome.wustl.edu	37	chrX	153418542	153418542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.473214285714286	53	2.2470732348306e-17	3.59103879545868	4.69771112865036	2.64246250986582	0.0558790354038226	0.402989063857274	38	tgccttctcctggatctggtCtgctgtgtggacagccccgc	12	14	3	0			TCGA-C8-A275-01A-21D-A16D-09	TCGA-C8-A275-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751a837-2656-4e3b-9182-556314c4f6a3	8775eb88-4ca6-43b1-b4c1-00767ac1b3de	X	153418542	153418542	C	G	SNP	OPN1LW	ENST00000369951	human	ensembl	69_37n	1	known	missense	c.539	p.S180C	0.989	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076	151	0	0	71	39	35.45	-	-	-	G	153418542	C	G	153418542	3	3	662	1	0	0	0	0	1	0	0	0	10950	913	32	2	549	2	OPN1LW	23	153418542	Missense_Mutation	SNP	C	TCGA-C8-A275-01A-21D-A16D-09	194995	153418542	1852018	112	57183										
PHC2	0	genome.wustl.edu	37	chr1	33797902	33797902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gatagggctcctccatctccGagtcagtggtggtggtgtga	15	9	2	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	1	33797902	33797902	G	A	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	missense	c.1865	p.S622L	0.999	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	87	0	0	70	12	14.63	-	-	-	A	33797902	G	A	33797902	3	1	663	1	0	0	0	0	1	0	0	0	11891	1059	37	1	734	1	PHC2	1	33797902	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09		33797902	215452719	1	57184										
GBA	0	genome.wustl.edu	37	chr1	155207291	155207291	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	cactggaaggggtatccactCaacagcccagcagaaggctc	11	13	1	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	1	155207291	155207291	C	G	SNP	GBA	ENST00000327247	human	ensembl	69_37n	-1	known	missense	c.840	p.L280F	0.006	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628	55	0	0	52	10	16.13	-	-	-	G	155207291	C	G	155207291	3	3	663	1	0	0	0	0	1	0	0	0	6316	825	29	2	790	2	GBA	1	155207291	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09	121409389	155207291	94043330	2	57185										
C2orf56	0	genome.wustl.edu	37	chr2	37458853	37458853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gcctgcgaatttcagcatgaGtgtactgctgaggtcaggtt	13	8	2	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	2	37458853	37458853	G	A	SNP	C2orf56	ENST00000002125	human	ensembl	69_37n	1	known	missense	c.5	p.S2N	0.794	NULL	pfam_MidA	-	no_errors	C2orf56	HGNC	ENSG00000003509	75	0	0	74	33	30.84	-	-	-	A	37458853	G	A	37458853	3	1	663	1	0	0	0	0	1	0	0	0	2197	1029	36	4	7	4	C2orf56	2	37458853	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09		37458853	205740520	3	57186										
SEPT2	0	genome.wustl.edu	37	chr2	242289558	242289558	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gcagatgcagggcggggatgGcgatggcggggctctcgggc	22	9	1	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	2	242289558	242289558	G	T	SNP	SEPT2	ENST00000360051	human	ensembl	69_37n	1	known	missense	c.1055	p.G352V	0.440	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385	49	0	0	45	5	10	-	-	-	T	242289558	G	T	242289558	3	4	663	1	0	0	0	0	1	0	0	0	14152	1203	42	4	1097	4	SEPT2	2	242289558	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09	204830705	242289558	909815	4	57187										
PIK3CA	0	genome.wustl.edu	37	chr3	178952063	178952063	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	aagaggctttggagtatttcAtgaaacaaatgaatgatgca	10	4	1	4			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	3	178952063	178952063	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3118	p.M1040V	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	38	0	0	51	15	22.73	-	-	-	G	178952063	A	G	178952063	3	3	663	1	0	0	0	0	1	0	0	0	11987	217	8	5	3196	5	PIK3CA	3	178952063	Missense_Mutation	SNP	A	TCGA-C8-A278-01A-11D-A167-09		178952063	19070367	5	57188			1	97		2	2	23	A		1.847721e-05
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0	56	16	22.22	-	-	-	T	178952085	A	T	178952085	3	4	663	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A278-01A-11D-A167-09	22	178952085	19070345	6	57189			1	97		2	2	23	A		1.847721e-05
MUC4	0	genome.wustl.edu	37	chr3	195506293	195506293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	ctgtggataatgaggaagcaTtggtgacaggaagaggggtg	18	3	0	3			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	3	195506293	195506293	T	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12158	p.N4053S	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	52	0	0	68	8	10.26	-	-	-	C	195506293	T	C	195506293	3	2	663	1	0	0	0	0	1	0	0	0	10050	1493	52	5		5	MUC4	3	195506293	Missense_Mutation	SNP	T	TCGA-C8-A278-01A-11D-A167-09	16554208	195506293	2516137	7	57190										
EXOC2	0	genome.wustl.edu	37	chr6	497489	497489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	ttctttggaaatggtgaacaCctggtttgaaataggaagac	11	5	1	3			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	6	497489	497489	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	missense	c.2437	p.V813M	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	32	0	0	22	10	31.25	-	-	-	T	497489	C	T	497489	3	4	663	1	0	0	0	0	1	0	0	0	5338	521	18	4	353	4	EXOC2	6	497489	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		497489	170617578	8	57191										
HERPUD2	0	genome.wustl.edu	37	chr7	35712884	35712884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	acaccaatctctgatccttcGtcaactaagaaatgggacaa	6	11	2	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	7	35712884	35712884	G	A	SNP	HERPUD2	ENST00000311350	human	ensembl	69_37n	-1	known	missense	c.152	p.T51M	0.998	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	HERPUD2	HGNC	ENSG00000122557	48	0	0	49	6	10.91	-	-	-	A	35712884	G	A	35712884	3	1	663	1	0	0	0	0	1	0	0	0	7115	1145	40	1	1096	1	HERPUD2	7	35712884	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09		35712884	123425779	9	57192										
CEL	0	genome.wustl.edu	37	chr9	135944195	135944195	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	aacatggacggccacatcttCgccagcatcgacatgcctgc	9	15	1	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	9	135944195	135944195	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	silent	c.1041	p.F347	0.979	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	22	0	0	10	3	23.08	-	-	-	T	135944195	C	T	135944195	2	4	663	1	0	0	0	0	0	0	0	1	3238	883	31	1		1	CEL	9	135944195	Silent	SNP	C	TCGA-C8-A278-01A-11D-A167-09		135944195	5269236	10	57193										
CALML5	0	genome.wustl.edu	37	chr10	5541283	5541283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	cctccgagaggttcttgcccGtggccttcagcgccgcgccc	12	18	2	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	10	5541283	5541283	G	A	SNP	CALML5	ENST00000380332	human	ensembl	69_37n	-1	known	missense	c.119	p.T40M	0.980	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML5	HGNC	ENSG00000178372	37	0	0	61	8	11.59	-	-	-	A	5541283	G	A	5541283	3	1	663	1	0	0	0	0	1	0	0	0	2614	1145	40	1	325	1	CALML5	10	5541283	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09		5541283	129993464	11	57194										
PANK1	0	genome.wustl.edu	37	chr10	91353062	91353062	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gaatctcgcttttctttactCatcatgttgccaaagctatg	6	10	4	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	10	91353062	91353062	C	T	SNP	PANK1	ENST00000307534	human	ensembl	69_37n	-1	known	missense	c.1503	p.M501I	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782	109	0	0	83	12	12.63	-	-	-	T	91353062	C	T	91353062	3	4	663	1	0	0	0	0	1	0	0	0	11489	826	29	2	305	2	PANK1	10	91353062	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09	85811779	91353062	44181685	12	57195										
NDFIP2	0	genome.wustl.edu	37	chr13	80113888	80113888	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	ctcagagtggggaatgatggCattttcatgctggcattttt	12	6	2	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	13	80113888	80113888	C	A	SNP	NDFIP2	ENST00000465762	human	ensembl	69_37n	1	known	missense	c.440	p.A147E	0.947	pfam_NEDD4/BSD2	pfam_NEDD4/BSD2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NDFIP2	HGNC	ENSG00000102471	126	0	0	89	10	10	-	-	-	A	80113888	C	A	80113888	3	1	663	1	0	0	0	0	1	0	0	0	10318	697	25	4	707	4	NDFIP2	13	80113888	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		80113888	35055990	13	57196										
RIPK3	0	genome.wustl.edu	37	chr14	24808688	24808688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	tacgatcttgaccgccacatCgtagccccacttcctatgtt	6	15	1	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	14	24808688	24808688	C	T	SNP	RIPK3	ENST00000216274	human	ensembl	69_37n	-1	known	missense	c.136	p.D46N	0.378	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK3	HGNC	ENSG00000129465	63	0	0	49	10	16.95	-	-	-	T	24808688	C	T	24808688	3	4	663	1	0	0	0	0	1	0	0	0	13468	884	31	1	1456	1	RIPK3	14	24808688	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		24808688	82540852	14	57197										
C14orf80	0	genome.wustl.edu	37	chr14	105960224	105960224	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	ccagagccttagccatctgtCtgtcactgaagcagagatgc	10	12	3	3			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	14	105960224	105960224	C	T	SNP	C14orf80	ENST00000392523	human	ensembl	69_37n	1	known	missense	c.638	p.S213F	0.998	NULL	NULL	-	no_errors	C14orf80	HGNC	ENSG00000185347	26	0	0	21	4	16	-	-	-	T	105960224	C	T	105960224	3	4	663	1	0	0	0	0	1	0	0	0	1793	913	32	2	684	2	C14orf80	14	105960224	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09	81151536	105960224	1389316	15	57198										
SRL	0	genome.wustl.edu	37	chr16	4245638	4245638	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	aagtttgtggggaacctcaaTgccaatcagcttctctagga	10	9	3	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	16	4245638	4245638	T	G	SNP	SRL	ENST00000399609	human	ensembl	69_37n	-1	known	missense	c.526	p.I176L	0.998	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	-	no_errors	SRL	HGNC	ENSG00000185739	43	0	0	73	19	20.65	-	-	-	G	4245638	T	G	4245638	3	3	663	1	0	0	0	0	1	0	0	0	15241	1464	51	5	903	5	SRL	16	4245638	Missense_Mutation	SNP	T	TCGA-C8-A278-01A-11D-A167-09		4245638	86109115	16	57199										
ZC3H7A	0	genome.wustl.edu	37	chr16	11856527	11856527	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	agtacacaagagaaaaatacCtgcgctccaggtacatttgc	8	10	0	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	16	11856527	11856527	C	G	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.2079	p.Q693H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	59	0	0	80	12	13.04	-	-	-	G	11856527	C	G	11856527	3	3	663	1	0	0	0	0	1	0	0	0	17668	695	24	4	864	4	ZC3H7A	16	11856527	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09	7610889	11856527	78498226	17	57200										
TP53	0	genome.wustl.edu	37	chr17	7578427	7578427	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gcctcacaacctccgtcatgTgctgtgactgcttgtagatg	10	12	2	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	17	7578427	7578427	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.503	p.H168P	0.995	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	31	10	24.39	-	-	-	G	7578427	T	G	7578427	3	3	663	1	0	0	0	0	1	0	0	0	16477	1696	59	5	795	5	TP53	17	7578427	Missense_Mutation	SNP	T	TCGA-C8-A278-01A-11D-A167-09		7578427	73616783	18	57201										
KRT28	0	genome.wustl.edu	37	chr17	38950160	38950160	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gacatcgaggagatgctcatActccagcttctggccctcgg	11	13	2	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	17	38950160	38950160	A	G	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.1117	p.Y373H	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	106	0	0	67	9	11.69	-	-	-	G	38950160	A	G	38950160	3	3	663	1	0	0	0	0	1	0	0	0	8518	391	14	5	289	5	KRT28	17	38950160	Missense_Mutation	SNP	A	TCGA-C8-A278-01A-11D-A167-09	31371733	38950160	42245050	19	57202										
CNP	0	genome.wustl.edu	37	chr17	40125630	40125630	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	agtgatgtggacaagctgtcAcccactgacaacctgccgcg	11	13	1	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	17	40125630	40125630	A	C	SNP	CNP	ENST00000393892	human	ensembl	69_37n	1	known	silent	c.954	p.S318	0.000	pfam_CNPase,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786	34	0	0	18	8	30.77	-	-	-	C	40125630	A	C	40125630	2	2	663	1	0	0	0	0	0	0	0	1	3656	146	6	5		5	CNP	17	40125630	Silent	SNP	A	TCGA-C8-A278-01A-11D-A167-09	1175470	40125630	41069580	20	57203										
FOXA3	0	genome.wustl.edu	37	chr19	46376150	46376150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	aggggagctgaagctggacgCgccctacaacttcaaccacc	11	14	1	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	19	46376150	46376150	C	T	SNP	FOXA3	ENST00000302177	human	ensembl	69_37n	1	known	missense	c.887	p.A296V	0.918	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608	24	0	0	32	8	20	-	-	-	T	46376150	C	T	46376150	3	4	663	1	0	0	0	0	1	0	0	0	6037	768	27	1	893	1	FOXA3	19	46376150	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		46376150	12752833	21	57204										
SIGLEC7	0	genome.wustl.edu	37	chr19	51656410	51656410	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	aggaaagagagatccagtatGcacccctcagctttcataag	9	10	2	2			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	19	51656410	51656410	G	T	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.1312	p.A438S	0.047	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	49	0	0	29	11	27.5	-	-	-	T	51656410	G	T	51656410	3	4	663	1	0	0	0	0	1	0	0	0	14402	1319	46	4	1338	4	SIGLEC7	19	51656410	Missense_Mutation	SNP	G	TCGA-C8-A278-01A-11D-A167-09	5280260	51656410	7472573	22	57205										
ANGPT4	0	genome.wustl.edu	37	chr20	858964	858964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	gtgctccccagctgggtctcCgaagccctatagggagggga	15	12	1	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	20	858964	858964	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.1060	p.G354R	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	22	0	0	17	5	22.73	-	-	-	T	858964	C	T	858964	3	4	663	1	0	0	0	0	1	0	0	0	612	661	23	1	463	1	ANGPT4	20	858964	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		858964	62166556	23	57206										
TASP1	0	genome.wustl.edu	37	chr20	13415695	13415695	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	tatatgtctcacttacctagAagtgtctgcttattttggga	8	7	2	1			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	20	13415695	13415695	A	G	SNP	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	silent	c.1092	p.L364	1.000	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	35	0	0	42	6	12.5	-	-	-	G	13415695	A	G	13415695	2	3	663	1	0	0	0	0	0	0	0	1	15681	233	9	5		5	TASP1	20	13415695	Silent	SNP	A	TCGA-C8-A278-01A-11D-A167-09	12556731	13415695	49609825	24	57207										
RRBP1	0	genome.wustl.edu	37	chr20	17639834	17639834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	tctgggccccctcggccttcTtgccctggttctgggccccc	11	19	3	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	20	17639834	17639834	T	C	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.1319	p.K440R	0.247	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	12	0	0	6	7	53.85	-	-	-	C	17639834	T	C	17639834	3	2	663	1	0	0	0	0	1	0	0	0	13764	1624	56	5		5	RRBP1	20	17639834	Missense_Mutation	SNP	T	TCGA-C8-A278-01A-11D-A167-09	4224139	17639834	45385686	25	57208										
RABL2B	0	genome.wustl.edu	37	chr22	51220689	51220689	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.115384615384615	3	0.642154257900391	1.51356238698011	2.35443037974684	1.28423475258918	1	1	0	agcatcatacttcccttggtCcaactcactcggtttggttt	7	12	2	0			TCGA-C8-A278-01A-11D-A167-09	TCGA-C8-A278-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bc48524-1f69-4d85-9d16-6db7844543bd	e8b5251b-f5fe-4c0c-8428-a23e14177ff5	22	51220689	51220689	C	G	SNP	RABL2B	ENST00000354869	human	ensembl	69_37n	-1	known	missense	c.34	p.D12H	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RABL2B	HGNC	ENSG00000079974	74	0	0	44	12	21.43	-	-	-	G	51220689	C	G	51220689	3	3	663	1	0	0	0	0	1	0	0	0	13054	855	30	2	717	2	RABL2B	22	51220689	Missense_Mutation	SNP	C	TCGA-C8-A278-01A-11D-A167-09		51220689	83877	26	57209										
NCL	0	genome.wustl.edu	37	chr2	232320764	232320764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gtcagtaactatccttgcccGaacggagccgtcaaatgact	9	12	2	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	2	232320764	232320764	G	A	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.1789	p.R597W	0.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	43	0	0	26	37	58.73	-	-	-	A	232320764	G	A	232320764	3	1	664	1	0	0	0	0	1	0	0	0	10298	1057	37	1	355	1	NCL	2	232320764	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		232320764	10878609	1	57210										
UGT1A10	0	genome.wustl.edu	37	chr2	234545248	234545248	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	tggctttgccgaggcagggaAgctgctggtagtgcccatgg	17	9	0	0			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	2	234545248	234545248	A	T	SNP	UGT1A10	ENST00000344644	human	ensembl	69_37n	1	known	missense	c.80	p.K27M	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A10	HGNC	ENSG00000242515	70	0	0	74	14	15.91	-	-	-	T	234545248	A	T	234545248	3	4	664	1	0	0	0	0	1	0	0	0	17042	72	3	5	82	5	UGT1A10	2	234545248	Missense_Mutation	SNP	A	TCGA-C8-A27A-01A-11D-A167-09	2224484	234545248	8654125	2	57211										
FILIP1L	0	genome.wustl.edu	37	chr3	99568867	99568867	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	tacatcttttcttctacatcGgttttggacttgagcgccct	7	11	3	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	3	99568867	99568867	G	A	SNP	FILIP1L	ENST00000354552	human	ensembl	69_37n	-1	known	silent	c.1653	p.T551	0.589	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	51	0	0	61	39	39	-	-	-	A	99568867	G	A	99568867	2	1	664	1	0	0	0	0	0	0	0	1	5941	1103	39	1		1	FILIP1L	3	99568867	Silent	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		99568867	98453563	3	57212										
ALCAM	0	genome.wustl.edu	37	chr3	105238944	105238944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	tactgtaaattcagcatatgGagataccattatcatacctt	5	8	2	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	3	105238944	105238944	G	A	SNP	ALCAM	ENST00000306107	human	ensembl	69_37n	1	known	missense	c.107	p.G36E	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ALCAM	HGNC	ENSG00000170017	60	0	0	62	9	12.68	-	-	-	A	105238944	G	A	105238944	3	1	664	1	0	0	0	0	1	0	0	0	487	1174	41	2	113	2	ALCAM	3	105238944	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09	5670077	105238944	92783486	4	57213										
UIMC1	0	genome.wustl.edu	37	chr5	176396604	176396604	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	cagaacagggagacatgcctTcagtgagcccagagtctgtg	13	10	2	4			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	5	176396604	176396604	T	C	SNP	UIMC1	ENST00000377219	human	ensembl	69_37n	-1	known	missense	c.461	p.E154G	1.000	NULL	smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	-	no_errors	UIMC1	HGNC	ENSG00000087206	69	0	0	66	10	13.16	-	-	-	C	176396604	T	C	176396604	3	2	664	1	0	0	0	0	1	0	0	0	17068	1783	62	5	1742	5	UIMC1	5	176396604	Missense_Mutation	SNP	T	TCGA-C8-A27A-01A-11D-A167-09		176396604	4518656	5	57214										
TNXB	0	genome.wustl.edu	37	chr6	32029275	32029275	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gctccaggccccccacggtgAcctcgctctcctcgccccca	8	23	1	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	6	32029275	32029275	A	G	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.7391	p.V2464A	0.718	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	35	0	0	15	13	46.43	-	-	-	G	32029275	A	G	32029275	3	3	664	1	0	0	0	0	1	0	0	0	16441	275	10	5	7418	5	TNXB	6	32029275	Missense_Mutation	SNP	A	TCGA-C8-A27A-01A-11D-A167-09		32029275	139085792	6	57215										
TFPI2	0	genome.wustl.edu	37	chr7	93519525	93519525	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	ttgccctcgcagcccccgtaCaggaactggcggcagctctg	12	16	1	0			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	7	93519525	93519525	C	A	SNP	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	silent	c.195	p.L65	0.001	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	35	0	0	33	9	21.43	-	-	-	A	93519525	C	A	93519525	2	1	664	1	0	0	0	0	0	0	0	1	15904	465	17	4		4	TFPI2	7	93519525	Silent	SNP	C	TCGA-C8-A27A-01A-11D-A167-09		93519525	65619138	7	57216										
ARHGEF10	0	genome.wustl.edu	37	chr8	1833860	1833860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gaccccgatgcccgagggttTatctcagcagcaggtgagat	13	11	1	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	8	1833860	1833860	T	C	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	missense	c.1244	p.L415S	0.261	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	40	0	0	36	4	10	-	-	-	C	1833860	T	C	1833860	3	2	664	1	0	0	0	0	1	0	0	0	896	1764	61	5	1207	5	ARHGEF10	8	1833860	Missense_Mutation	SNP	T	TCGA-C8-A27A-01A-11D-A167-09		1833860	144530162	8	57217										
C8orf34	0	genome.wustl.edu	37	chr8	69381036	69381036	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	agcaagaagctggggaaagcCcttgagaatctctctcgaag	12	9	2	2			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	8	69381036	69381036	C	G	SNP	C8orf34	ENST00000518698	human	ensembl	69_37n	1	known	silent	c.717	p.A239	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084	26	0	0	24	8	25	-	-	-	G	69381036	C	G	69381036	2	3	664	1	0	0	0	0	0	0	0	1	2446	610	22	4		4	C8orf34	8	69381036	Silent	SNP	C	TCGA-C8-A27A-01A-11D-A167-09	67547176	69381036	76982986	9	57218										
POP1	0	genome.wustl.edu	37	chr8	99168386	99168386	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gagtcaagagtccaggcttaCgaagaaccttctgtagcttc	10	10	2	2			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	8	99168386	99168386	C	G	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	nonsense	c.2166	p.Y722*	0.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	32	0	0	91	12	11.65	-	-	-	G	99168386	C	G	99168386	4	3	664	1	0	0	0	0	0	1	0	0	12325	547	19	3	2220	3	POP1	8	99168386	Nonsense_Mutation	SNP	C	TCGA-C8-A27A-01A-11D-A167-09	29787350	99168386	47195636	10	57219										
PRUNE2	0	genome.wustl.edu	37	chr9	79319916	79319916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	aaagcactatctctgctgctCtgcatcccagagattcatcc	6	14	3	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	9	79319916	79319916	C	G	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.6197	p.R2066T	0.021	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	35	0	0	34	21	38.18	-	-	-	G	79319916	C	G	79319916	3	3	664	1	0	0	0	0	1	0	0	0	12721	913	32	2	2040	2	PRUNE2	9	79319916	Missense_Mutation	SNP	C	TCGA-C8-A27A-01A-11D-A167-09		79319916	61893515	11	57220										
CDC123	0	genome.wustl.edu	37	chr10	12259451	12259451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gagttccgatttcatcactcGtgacttcactcagccgtaag	8	12	4	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	10	12259451	12259451	G	A	SNP	CDC123	ENST00000281141	human	ensembl	69_37n	1	known	missense	c.425	p.R142H	1.000	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465	36	0	0	43	6	12.24	-	-	-	A	12259451	G	A	12259451	3	1	664	1	0	0	0	0	1	0	0	0	3084	1145	40	1	447	1	CDC123	10	12259451	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		12259451	123275296	12	57221										
PGR	0	genome.wustl.edu	37	chr11	100962590	100962590	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gcagtcatttcttccagcacAtaagtagttgtgctgcccta	8	11	2	0			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	11	100962590	100962590	A	G	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.1807	p.C603R	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	58	0	0	12	70	85.37	-	-	-	G	100962590	A	G	100962590	3	3	664	1	0	0	0	0	1	0	0	0	11879	217	8	5	1018	5	PGR	11	100962590	Missense_Mutation	SNP	A	TCGA-C8-A27A-01A-11D-A167-09		100962590	34043926	13	57222										
SLC6A15	0	genome.wustl.edu	37	chr12	85270296	85270296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	cttaggggtaaacatgtggcGaatgccatcaattgaaccat	10	8	1	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	12	85270296	85270296	G	A	SNP	SLC6A15	ENST00000266682	human	ensembl	69_37n	-1	known	missense	c.847	p.R283C	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan,pfscan_Na/ntran_symport	-	no_errors	SLC6A15	HGNC	ENSG00000072041	32	0	0	26	13	33.33	-	-	-	A	85270296	G	A	85270296	3	1	664	1	0	0	0	0	1	0	0	0	14767	1058	37	1	1373	1	SLC6A15	12	85270296	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		85270296	48581599	14	57223										
FBXW8	0	genome.wustl.edu	37	chr12	117448250	117448250	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	atggtcagtggcaacatggaCgggaggtacgtgagttggaa	17	5	1	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	12	117448250	117448250	C	T	SNP	FBXW8	ENST00000309909	human	ensembl	69_37n	1	known	silent	c.1362	p.D454	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_Quinonprotein_ADH-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989	30	0	0	41	11	21.15	-	-	-	T	117448250	C	T	117448250	2	4	664	1	0	0	0	0	0	0	0	1	5816	535	19	1		1	FBXW8	12	117448250	Silent	SNP	C	TCGA-C8-A27A-01A-11D-A167-09	32177954	117448250	16403645	15	57224										
MCF2L	0	genome.wustl.edu	37	chr13	113750743	113750743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	gggaggccccgatgcgctgcGcgtgaggagcggggacgtgg	22	10	0	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	13	113750743	113750743	G	A	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	missense	c.3305	p.R1102H	0.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	21	0	0	24	12	33.33	-	-	-	A	113750743	G	A	113750743	3	1	664	1	0	0	0	0	1	0	0	0	9450	1087	38	1	3510	1	MCF2L	13	113750743	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		113750743	1419135	16	57225										
RTL1	0	genome.wustl.edu	37	chr14	101349800	101349800	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	tcgacgtagtgctcttgggcGaacttctcatccatgaagtt	10	10	2	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	14	101349800	101349800	G	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	silent	c.1326	p.F442	0.595	superfamily_Peptidase_aspartic	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	25	0	0	20	12	37.5	-	-	-	A	101349800	G	A	101349800	2	1	664	1	0	0	0	0	0	0	0	1	13810	1049	37	1		1	RTL1	14	101349800	Silent	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		101349800	5999740	17	57226										
TP53	0	genome.wustl.edu	37	chr17	7578253	7578253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	aatactccacacgcaaatttCcttccactcggataagatgc	5	13	0	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	17	7578253	7578253	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.596	p.G199V	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	52	0	0	8	49	85.96	-	-	-	A	7578253	C	A	7578253	3	1	664	1	0	0	0	0	1	0	0	0	16477	855	30	2	698	2	TP53	17	7578253	Missense_Mutation	SNP	C	TCGA-C8-A27A-01A-11D-A167-09		7578253	73616957	18	57227										
LGALS9	0	genome.wustl.edu	37	chr17	25965319	25965319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	tttctgggactattcaaggaGgtctccaggacggacttcag	12	9	4	0			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	17	25965319	25965319	G	A	SNP	LGALS9	ENST00000395473	human	ensembl	69_37n	1	known	missense	c.70	p.G24S	0.383	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS9	HGNC	ENSG00000168961	37	0	0	22	15	40.54	-	-	-	A	25965319	G	A	25965319	3	1	664	1	0	0	0	0	1	0	0	0	8803	1000	35	4	76	4	LGALS9	17	25965319	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09	18387066	25965319	55229891	19	57228										
DSG1	0	genome.wustl.edu	37	chr18	28934500	28934500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	cttggccaccacaaagcactGaaccagtttgccttcctcag	7	15	1	1			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	18	28934500	28934500	G	A	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	1	known	missense	c.2341	p.E781K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	50	0	0	45	10	18.18	-	-	-	A	28934500	G	A	28934500	3	1	664	1	0	0	0	0	1	0	0	0	4811	1291	45	2	2399	2	DSG1	18	28934500	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		28934500	49142748	20	57229										
PPAN-P2RY11	0	genome.wustl.edu	37	chr19	10224638	10224638	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	cctgcaacctgctgggcagcGtcatcttcatcacctgcatc	8	16	4	0			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	19	10224638	10224638	G	C	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	1	known	missense	c.1609	p.V537L	0.879	pfam_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	28	0	0	7	17	70.83	-	-	-	C	10224638	G	C	10224638	3	2	664	1	0	0	0	0	1	0	0	0	12362	1145	40	3		3	PPAN-P2RY11	19	10224638	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		10224638	48904345	21	57230										
MED12	0	genome.wustl.edu	37	chrX	70344921	70344921	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0909090909090909	2	0.871886716160037	1.11751152073733	1.95564516129032	0.782258064516129	1	1	0	aagcccccacccaaggagaaGattgaagggacccttggggt	13	11	0	3			TCGA-C8-A27A-01A-11D-A167-09	TCGA-C8-A27A-10B-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d0fd3dcc-4ac7-4fe9-9fb8-c0676b6faabb	b3bbaa37-c5ad-44d8-aab3-78472e776a66	X	70344921	70344921	G	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.2151	p.K717N	0.966	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	30	0	0	31	7	18.42	-	-	-	T	70344921	G	T	70344921	3	4	664	1	0	0	0	0	1	0	0	0	9499	933	33	2	2209	2	MED12	23	70344921	Missense_Mutation	SNP	G	TCGA-C8-A27A-01A-11D-A167-09		70344921	84925639	22	57231										
KLHDC7A	0	genome.wustl.edu	37	chr1	18808277	18808277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ccttctcatccatagcccgcGtccgaatggaggagcatttc	9	14	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	18808277	18808277	G	C	SNP	KLHDC7A	ENST00000400664	human	ensembl	69_37n	1	known	missense	c.802	p.V268L	0.419	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023	16	0	0	13	7	35	-	-	-	C	18808277	G	C	18808277	3	2	665	1	0	0	0	0	1	0	0	0	8413	1145	40	3	804	3	KLHDC7A	1	18808277	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		18808277	230442344	1	57232										
SCMH1	0	genome.wustl.edu	37	chr1	41499688	41499688	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tagtttccaaaatgattccaTatcccttctttcatttgatc	3	10	2	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	41499688	41499688	T	C	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	missense	c.1681	p.M561V	0.996	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	49	0	0	109	24	18.05	-	-	-	C	41499688	T	C	41499688	3	2	665	1	0	0	0	0	1	0	0	0	13996	1406	49	5	313	5	SCMH1	1	41499688	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	22691411	41499688	207750933	2	57233										
SLC1A7	0	genome.wustl.edu	37	chr1	53556433	53556433	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gcgatgcgccggtcgatgtgGttgttctccagcaggcactt	14	11	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	53556433	53556433	G	C	SNP	SLC1A7	ENST00000371494	human	ensembl	69_37n	-1	known	missense	c.1077	p.N359K	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383	19	0	0	25	6	19.35	-	-	-	C	53556433	G	C	53556433	3	2	665	1	0	0	0	0	1	0	0	0	14526	1252	44	4	621	4	SLC1A7	1	53556433	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	12056745	53556433	195694188	3	57234										
GBP4	0	genome.wustl.edu	37	chr1	89658731	89658731	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gctggagtcctcagcttcatCaggtctggggcaggattttg	14	9	4	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	89658731	89658731	C	G	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.526	p.D176H	0.005	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	49	0	0	49	13	20.97	-	-	-	G	89658731	C	G	89658731	3	3	665	1	0	0	0	0	1	0	0	0	6326	826	29	2	1424	2	GBP4	1	89658731	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	36102298	89658731	159591890	4	57235										
DNTTIP2	0	genome.wustl.edu	37	chr1	94343060	94343060	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aaatacctgaaacatgagatTctgcttcagacactatttct	5	9	3	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	94343060	94343060	T	A	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	missense	c.431	p.E144V	1.000	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	59	0	0	93	14	13.08	-	-	-	A	94343060	T	A	94343060	3	1	665	1	0	0	0	0	1	0	0	0	4717	1783	62	5	1863	5	DNTTIP2	1	94343060	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	4684329	94343060	154907561	5	57236										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150525701	150525701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cttcccacctagggagagagGagacccaggagattcgagcg	14	11	0	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	150525701	150525701	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	missense	c.406	p.E136K	0.455	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	10	0	0	5	5	50	-	-	-	A	150525701	G	A	150525701	3	1	665	1	0	0	0	0	1	0	0	0	277	1175	41	2	416	2	ADAMTSL4	1	150525701	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	56182641	150525701	98724920	6	57237										
SPRR1A	0	genome.wustl.edu	37	chr1	152957724	152957724	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	agcatgaattctcagcagcaGaagcagccttgcaccccacc	8	15	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	152957724	152957724	G	A	SNP	SPRR1A	ENST00000307122	human	ensembl	69_37n	1	known	silent	c.18	p.Q6	1.000	NULL	pfam_Cornifin	-	no_errors	SPRR1A	HGNC	ENSG00000169474	40	0	0	62	11	15.07	-	-	-	A	152957724	G	A	152957724	2	1	665	1	0	0	0	0	0	0	0	1	15186	933	33	2		2	SPRR1A	1	152957724	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	2432023	152957724	96292897	7	57238										
ASH1L	0	genome.wustl.edu	37	chr1	155450828	155450828	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	actgacctatgaccaacgttCaagtgggtactttcagaagt	9	9	2	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	155450828	155450828	C	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1833	p.L611F	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	51	0	0	53	12	18.46	-	-	-	G	155450828	C	G	155450828	3	3	665	1	0	0	0	0	1	0	0	0	1045	825	29	2	7165	2	ASH1L	1	155450828	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	2493104	155450828	93799793	8	57239										
SMG5	0	genome.wustl.edu	37	chr1	156236117	156236117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cttggggtgttacaggaggaGgctcaggatctggctcctcc	15	10	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	156236117	156236117	G	T	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	missense	c.1310	p.P437H	0.612	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	24	0	0	20	9	31.03	-	-	-	T	156236117	G	T	156236117	3	4	665	1	0	0	0	0	1	0	0	0	14885	1000	35	4	1784	4	SMG5	1	156236117	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	785289	156236117	93014504	9	57240										
ADCY10	0	genome.wustl.edu	37	chr1	167865858	167865858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgctcaccagaaggataataAtgcatgaaggtcgtacactt	9	8	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	167865858	167865858	A	G	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	silent	c.714	p.H238	0.720	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	38	0	0	62	8	11.43	-	-	-	G	167865858	A	G	167865858	2	3	665	1	0	0	0	0	0	0	0	1	293	98	4	5		5	ADCY10	1	167865858	Silent	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	11629741	167865858	81384763	10	57241										
PRG4	0	genome.wustl.edu	37	chr1	186266033	186266033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atggaaaacacttcccatttAcctgttgttgctgctgtctg	8	10	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	1	186266033	186266033	A	C	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	missense	c.26	p.Y9S	0.049	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	55	0	0	94	25	21.01	-	-	-	C	186266033	A	C	186266033	3	2	665	1	0	0	0	0	1	0	0	0	12562	391	14	5	28	5	PRG4	1	186266033	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	18400175	186266033	62984588	11	57242										
NCOA1	0	genome.wustl.edu	37	chr2	24991255	24991255	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tccttcagcagctactgactGaataaccacttttaaaggaa	6	10	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	2	24991255	24991255	G	A	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	missense	c.4321	p.E1441K	1.000	NULL	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	24	0	0	21	8	27.59	-	-	-	A	24991255	G	A	24991255	3	1	665	1	0	0	0	0	1	0	0	0	10300	1291	45	2	4444	2	NCOA1	2	24991255	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		24991255	218208118	12	57243										
EFEMP1	0	genome.wustl.edu	37	chr2	56145044	56145044	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gttgcccctgaggttccttcTgctggttgtgtttcctgctg	12	11	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	2	56145044	56145044	T	G	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	silent	c.273	p.A91	0.000	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	55	0	0	50	35	41.18	-	-	-	G	56145044	T	G	56145044	2	3	665	1	0	0	0	0	0	0	0	1	4976	1567	55	5		5	EFEMP1	2	56145044	Silent	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	31153789	56145044	187054329	13	57244										
SPR	0	genome.wustl.edu	37	chr2	73115498	73115498	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctgagtgactccactcaagtGaacaactactgggcactgaa	9	11	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	2	73115498	73115498	G	A	SNP	SPR	ENST00000234454	human	ensembl	69_37n	1	known	silent	c.360	p.V120	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096	34	0	0	39	7	15.22	-	-	-	A	73115498	G	A	73115498	2	1	665	1	0	0	0	0	0	0	0	1	15182	1277	45	2		2	SPR	2	73115498	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	16970454	73115498	170083875	14	57245										
IL1RL2	0	genome.wustl.edu	37	chr2	102805699	102805699	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atcatacagtctagaattcaCcaggacgagacttggatttt	8	8	3	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	2	102805699	102805699	C	G	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.222	p.H74Q	1.000	smart_Ig_sub,pfscan_Ig-like,prints_IL1R_rcpt	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	40	0	0	44	6	12	-	-	-	G	102805699	C	G	102805699	3	3	665	1	0	0	0	0	1	0	0	0	7718	506	18	4	228	4	IL1RL2	2	102805699	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	29690201	102805699	140393674	15	57246										
DGKD	0	genome.wustl.edu	37	chr2	234357967	234357967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cctcgagaacagctcatgctGagagccaacagcctgaagaa	10	12	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	2	234357967	234357967	G	A	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	silent	c.1833	p.L611	0.998	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	22	0	0	24	7	22.58	-	-	-	A	234357967	G	A	234357967	2	1	665	1	0	0	0	0	0	0	0	1	4503	1277	45	2		2	DGKD	2	234357967	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	131552268	234357967	8841406	16	57247										
NKTR	0	genome.wustl.edu	37	chr3	42678814	42678814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	caagatcaaggactgcgtcaAagtcctcatcacattctcga	7	12	5	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	42678814	42678814	A	G	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.1618	p.K540E	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	42	0	0	9	24	72.73	-	-	-	G	42678814	A	G	42678814	3	3	665	1	0	0	0	0	1	0	0	0	10520	15	1	5	1664	5	NKTR	3	42678814	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09		42678814	155343616	17	57248										
NISCH	0	genome.wustl.edu	37	chr3	52521224	52521224	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctgcacagcccagaacatgcCgagccggaggtccaggtggt	14	13	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	52521224	52521224	C	G	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	silent	c.1716	p.A572	0.013	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	22	0	0	6	9	60	-	-	-	G	52521224	C	G	52521224	2	3	665	1	0	0	0	0	0	0	0	1	10504	639	23	3		3	NISCH	3	52521224	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	9842410	52521224	145501206	18	57249										
ROBO1	0	genome.wustl.edu	37	chr3	78656060	78656060	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gtaactgcttccttttctgtCtgatgatctgtctgttcttg	8	9	5	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	78656060	78656060	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.4567	p.D1523H	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	74	0	0	68	21	23.6	-	-	-	G	78656060	C	G	78656060	3	3	665	1	0	0	0	0	1	0	0	0	13599	913	32	2	400	2	ROBO1	3	78656060	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	26134836	78656060	119366370	19	57250										
ABI3BP	0	genome.wustl.edu	37	chr3	100471647	100471647	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttacctgtgagggagtcgctCaagtaaatcttgtatctgag	11	7	3	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	100471647	100471647	C	G	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.2973	p.L991F	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	48	0	0	74	14	15.91	-	-	-	G	100471647	C	G	100471647	3	3	665	1	0	0	0	0	1	0	0	0	91	825	29	2	266	2	ABI3BP	3	100471647	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	21815587	100471647	97550783	20	57251										
ATP6V1A	0	genome.wustl.edu	37	chr3	113517105	113517105	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atcaggtgttctggggcttaGataagaaactagctcaacgt	11	7	3	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	113517105	113517105	G	C	SNP	ATP6V1A	ENST00000273398	human	ensembl	69_37n	1	known	missense	c.1306	p.D436H	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	39	0	0	78	11	12.36	-	-	-	C	113517105	G	C	113517105	3	2	665	1	0	0	0	0	1	0	0	0	1181	942	33	2	1348	2	ATP6V1A	3	113517105	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	13045458	113517105	84505325	21	57252										
GOLGB1	0	genome.wustl.edu	37	chr3	121409716	121409716	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aggactgcacttggttataaGaatcttctagttgtgaggac	11	6	2	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	121409716	121409716	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.8480	p.S2827F	0.992	superfamily_STAT_TF_coiled-coil	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	47	0	0	61	17	21.79	-	-	-	A	121409716	G	A	121409716	3	1	665	1	0	0	0	0	1	0	0	0	6614	942	33	2	1335	2	GOLGB1	3	121409716	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	7892611	121409716	76612714	22	57253										
MCM2	0	genome.wustl.edu	37	chr3	127327260	127327260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	taccagcgtatccgaatccaGgagagtccaggcaaagtggc	12	11	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	127327260	127327260	G	A	SNP	MCM2	ENST00000491422	human	ensembl	69_37n	1	novel	missense	c.725	p.R242K	1.000	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_2,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MCM2	HGNC	ENSG00000073111	29	0	0	32	12	27.27	-	-	-	A	127327260	G	A	127327260	3	1	665	1	0	0	0	0	1	0	0	0	9457	991	35	4	1163	4	MCM2	3	127327260	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	5917544	127327260	70695170	23	57254										
GRK7	0	genome.wustl.edu	37	chr3	141535617	141535617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cgatcaactttcctcgcctgGaagctggcctaattgaaccc	8	14	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	141535617	141535617	G	C	SNP	GRK7	ENST00000264952	human	ensembl	69_37n	1	known	missense	c.1387	p.E463Q	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK7	HGNC	ENSG00000114124	48	0	0	60	15	20	-	-	-	C	141535617	G	C	141535617	3	2	665	1	0	0	0	0	1	0	0	0	6845	1175	41	2	1401	2	GRK7	3	141535617	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	14208357	141535617	56486813	24	57255										
IGSF10	0	genome.wustl.edu	37	chr3	151163081	151163081	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	agggagatggagttaatttaGaattctgtgatttaactgtt	11	2	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	151163081	151163081	G	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.4688	p.S1563C	0.310	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	56	0	0	68	11	13.92	-	-	-	C	151163081	G	C	151163081	3	2	665	1	0	0	0	0	1	0	0	0	7651	942	33	2	3243	2	IGSF10	3	151163081	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	9627464	151163081	46859349	25	57256										
PLD1	0	genome.wustl.edu	37	chr3	171320875	171320875	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	caatgaatatctcttaagtcCaaacctccatgggcactatg	6	11	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	3	171320875	171320875	C	G	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.3218	p.W1073S	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	33	0	0	66	22	25	-	-	-	G	171320875	C	G	171320875	3	3	665	1	0	0	0	0	1	0	0	0	12119	595	21	4	10	4	PLD1	3	171320875	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	20157794	171320875	26701555	26	57257										
MAEA	0	genome.wustl.edu	37	chr4	1330721	1330721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	acaactaccgactacaccagCtgggaaacaattctgtgttc	7	12	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	4	1330721	1330721	C	T	SNP	MAEA	ENST00000514708	human	ensembl	69_37n	1	known	missense	c.638	p.A213V	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	MAEA	HGNC	ENSG00000090316	33	0	0	17	8	30.77	-	-	-	T	1330721	C	T	1330721	3	4	665	1	0	0	0	0	1	0	0	0	9220	796	28	4	864	4	MAEA	4	1330721	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		1330721	189823555	27	57258										
CLDN22	0	genome.wustl.edu	37	chr4	184240911	184240911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cccacctggggacaaagtctGggacgttctcatcccagaac	10	14	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	4	184240911	184240911	G	T	SNP	CLDN22	ENST00000323319	human	ensembl	69_37n	-1	known	missense	c.461	p.P154Q	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN22	HGNC	ENSG00000177300	24	0	0	8	13	61.9	-	-	-	T	184240911	G	T	184240911	3	4	665	1	0	0	0	0	1	0	0	0	3513	1348	47	4	205	4	CLDN22	4	184240911	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	182910190	184240911	6913365	28	57259										
TRIM23	0	genome.wustl.edu	37	chr5	64907435	64907435	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	taattaaattcataccttgtGaccctggtgttttccatatt	5	8	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	5	64907435	64907435	G	C	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	missense	c.640	p.H214D	1.000	smart_Znf_B-box	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	50	0	0	61	17	21.79	-	-	-	C	64907435	G	C	64907435	3	2	665	1	0	0	0	0	1	0	0	0	16593	1290	45	2	1183	2	TRIM23	5	64907435	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		64907435	116007825	29	57260										
FBN2	0	genome.wustl.edu	37	chr5	127611744	127611744	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	actcacctttgcatgtctttCcatcctcttgcaggacatac	5	14	3	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	5	127611744	127611744	C	A	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.7580	p.G2527V	0.996	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	68	0	0	41	13	24.07	-	-	-	A	127611744	C	A	127611744	3	1	665	1	0	0	0	0	1	0	0	0	5749	855	30	2	1186	2	FBN2	5	127611744	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	62704309	127611744	53303516	30	57261										
SPOCK1	0	genome.wustl.edu	37	chr5	136403503	136403503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tttgccagtagaacaagcatGgaactccaatttgcactgca	8	10	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	5	136403503	136403503	G	C	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	missense	c.490	p.H164D	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	32	0	0	16	13	44.83	-	-	-	C	136403503	G	C	136403503	3	2	665	1	0	0	0	0	1	0	0	0	15170	1348	47	4	853	4	SPOCK1	5	136403503	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	8791759	136403503	44511757	31	57262										
BRD8	0	genome.wustl.edu	37	chr5	137481544	137481544	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atagcaaatgatcctgaacaGggtcatcctggcttagatca	9	9	2	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	5	137481544	137481544	G	C	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	missense	c.3302	p.P1101R	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	49	0	0	12	21	63.64	-	-	-	C	137481544	G	C	137481544	3	2	665	1	0	0	0	0	1	0	0	0	1514	1000	35	4	421	4	BRD8	5	137481544	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	1078041	137481544	43433716	32	57263										
SERPINB1	0	genome.wustl.edu	37	chr6	2840702	2840702	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tggtccccagaaaaaccatgGccatagcagatgaaatgctg	10	10	0	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	2840702	2840702	G	C	SNP	SERPINB1	ENST00000380739	human	ensembl	69_37n	-1	known	missense	c.119	p.A40G	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB1	HGNC	ENSG00000021355	26	0	0	15	8	34.78	-	-	-	C	2840702	G	C	2840702	3	2	665	1	0	0	0	0	1	0	0	0	14184	1203	42	4	1044	4	SERPINB1	6	2840702	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		2840702	168274365	33	57264										
RREB1	0	genome.wustl.edu	37	chr6	7248826	7248826	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cgccaccagcggatccaccaGaaagccaggcatgccaaaca	9	16	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	7248826	7248826	G	C	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	missense	c.4854	p.Q1618H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	24	0	0	83	16	16.16	-	-	-	C	7248826	G	C	7248826	3	2	665	1	0	0	0	0	1	0	0	0	13765	933	33	2	4892	2	RREB1	6	7248826	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	4408124	7248826	163866241	34	57265										
ANKS1A	0	genome.wustl.edu	37	chr6	35051198	35051198	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cccttgtttcctgtagaaatCtacggagcacatgaagaaga	9	9	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	35051198	35051198	C	G	SNP	ANKS1A	ENST00000360359	human	ensembl	69_37n	1	known	missense	c.2912	p.S971C	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999	30	0	0	70	22	23.91	-	-	-	G	35051198	C	G	35051198	3	3	665	1	0	0	0	0	1	0	0	0	687	913	32	2	2990	2	ANKS1A	6	35051198	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	27802372	35051198	136063869	35	57266										
MCM3	0	genome.wustl.edu	37	chr6	52138116	52138116	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctggctaaagttgggatcatCtgtggccaggatatccacag	12	9	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	52138116	52138116	C	G	SNP	MCM3	ENST00000229854	human	ensembl	69_37n	-1	known	missense	c.1588	p.D530H	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_3	-	no_errors	MCM3	HGNC	ENSG00000112118	49	0	0	109	20	15.5	-	-	-	G	52138116	C	G	52138116	3	3	665	1	0	0	0	0	1	0	0	0	9458	913	32	2	866	2	MCM3	6	52138116	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	17086918	52138116	118976951	36	57267										
SMAP1	0	genome.wustl.edu	37	chr6	71508424	71508424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gccagaaaagccggcaaaacCacttacagctgaaaaggtaa	9	10	0	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	71508424	71508424	C	A	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	missense	c.560	p.P187Q	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	73	0	0	57	16	21.92	-	-	-	A	71508424	C	A	71508424	3	1	665	1	0	0	0	0	1	0	0	0	14855	594	21	4	582	4	SMAP1	6	71508424	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	19370308	71508424	99606643	37	57268										
GTF3C6	0	genome.wustl.edu	37	chr6	111280417	111280417	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tatcaggaattattgattcaGacttcctctcaaaatgtgaa	6	7	3	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	6	111280417	111280417	G	T	SNP	GTF3C6	ENST00000329970	human	ensembl	69_37n	1	known	missense	c.100	p.D34Y	1.000	NULL	pfam_TFIIIC_tau55-rel	-	no_errors	GTF3C6	HGNC	ENSG00000155115	68	0	0	50	19	27.54	-	-	-	T	111280417	G	T	111280417	3	4	665	1	0	0	0	0	1	0	0	0	6928	942	33	2	106	2	GTF3C6	6	111280417	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	39771993	111280417	59834650	38	57269										
CARD11	0	genome.wustl.edu	37	chr7	2978400	2978400	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgcctgtcctccagggcctcCttgcggtcgtgttccaagat	11	14	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	2978400	2978400	C	G	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.930	p.K310N	1.000	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	23	0	0	20	10	33.33	-	-	-	G	2978400	C	G	2978400	3	3	665	1	0	0	0	0	1	0	0	0	2670	680	24	4	2610	4	CARD11	7	2978400	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		2978400	156160263	39	57270										
INHBA	0	genome.wustl.edu	37	chr7	41729394	41729394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggcaaaggggctatggccccGcatgcggtagtggttgatga	17	8	0	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	41729394	41729394	G	A	SNP	INHBA	ENST00000242208	human	ensembl	69_37n	-1	known	missense	c.1135	p.R379W	0.995	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641	27	0	0	9	26	74.29	-	-	-	A	41729394	G	A	41729394	3	1	665	1	0	0	0	0	1	0	0	0	7795	1086	38	1	149	1	INHBA	7	41729394	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	38750994	41729394	117409269	40	57271										
ZMIZ2	0	genome.wustl.edu	37	chr7	44795851	44795851	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	taggctgctccattgccaatGaactccatgaaccccatgaa	7	13	0	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	44795851	44795851	G	A	SNP	ZMIZ2	ENST00000309315	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515	30	0	0	12	28	70	-	-	-	A	44795851	G	A	44795851	3	1	665	1	0	0	0	0	1	0	0	0	17793	1290	45	2	5	2	ZMIZ2	7	44795851	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	3066457	44795851	114342812	41	57272										
ZNF679	0	genome.wustl.edu	37	chr7	63726567	63726567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctggaaagaaacatttcaaaTgtaaaaaatatggcaaatca	6	5	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	63726567	63726567	T	C	SNP	ZNF679	ENST00000255746	human	ensembl	69_37n	1	known	missense	c.556	p.C186R	0.556	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123	46	0	0	53	54	50.47	-	-	-	C	63726567	T	C	63726567	3	2	665	1	0	0	0	0	1	0	0	0	18182	1464	51	5	570	5	ZNF679	7	63726567	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	18930716	63726567	95412096	42	57273										
PCLO	0	genome.wustl.edu	37	chr7	82579907	82579907	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	accttccaaaattgcctgctCtgtagtggtttgtggagaag	11	8	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	82579907	82579907	C	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	nonsense	c.9997	p.E3333*	0.995	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	50	0	0	35	13	27.08	-	-	-	A	82579907	C	A	82579907	4	1	665	1	0	0	0	0	0	1	0	0	11656	922	32	2	5528	2	PCLO	7	82579907	Nonsense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	18853340	82579907	76558756	43	57274										
PCLO	0	genome.wustl.edu	37	chr7	82784791	82784791	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	caggaggctgagctaaagccTttggcccaggctgctccgat	13	12	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	7	82784791	82784791	T	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.1166	p.K389T	0.017	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	37	0	0	44	12	21.43	-	-	-	G	82784791	T	G	82784791	3	3	665	1	0	0	0	0	1	0	0	0	11656	1609	56	5	14375	5	PCLO	7	82784791	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	204884	82784791	76353872	44	57275										
UBR5	0	genome.wustl.edu	37	chr8	103297407	103297407	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttctcgcgcagtcatcctctCtcttctcgctgaattctgag	7	14	6	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	8	103297407	103297407	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.5644	p.E1882K	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	53	0	0	110	27	19.71	-	-	-	T	103297407	C	T	103297407	3	4	665	1	0	0	0	0	1	0	0	0	17002	922	32	2	2835	2	UBR5	8	103297407	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		103297407	43066615	45	57276										
NDRG1	0	genome.wustl.edu	37	chr8	134266813	134266813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggtgggacaccaccatgtccGgcagagcttgggtccatcct	13	13	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	8	134266813	134266813	G	A	SNP	NDRG1	ENST00000323851	human	ensembl	69_37n	-1	known	missense	c.563	p.P188L	0.981	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	32	0	0	75	11	12.79	-	-	-	A	134266813	G	A	134266813	3	1	665	1	0	0	0	0	1	0	0	0	10323	1116	39	1	653	1	NDRG1	8	134266813	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	30969406	134266813	12097209	46	57277										
ZNF250	0	genome.wustl.edu	37	chr8	146106959	146106959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gccatgctggttgaaggcacGcccacactccccgcactcat	9	17	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	8	146106959	146106959	G	A	SNP	ZNF250	ENST00000292579	human	ensembl	69_37n	-1	known	missense	c.1624	p.R542C	0.843	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF250	HGNC	ENSG00000196150	30	0	0	55	33	37.08	-	-	-	A	146106959	G	A	146106959	3	1	665	1	0	0	0	0	1	0	0	0	17891	1087	38	1	62	1	ZNF250	8	146106959	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	11840146	146106959	257063	47	57278										
KIAA1432	0	genome.wustl.edu	37	chr9	5763167	5763167	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tctgtcctcctgttgtactaGcccagtctgttgaaaatgtc	8	11	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	5763167	5763167	G	C	SNP	KIAA1432	ENST00000418622	human	ensembl	69_37n	1	known	missense	c.1903	p.A635P	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	62	0	0	30	132	81.48	-	-	-	C	5763167	G	C	5763167	3	2	665	1	0	0	0	0	1	0	0	0	8285	971	34	4	1973	4	KIAA1432	9	5763167	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		5763167	135450264	48	57279										
DENND4C	0	genome.wustl.edu	37	chr9	19346465	19346465	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tctgaggaataagagaagtaGtttatatggtattgctaagg	12	2	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	19346465	19346465	G	C	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	1	known	missense	c.2843	p.S948T	0.976	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	32	0	0	15	6	28.57	-	-	-	C	19346465	G	C	19346465	3	2	665	1	0	0	0	0	1	0	0	0	4471	1029	36	4	2913	4	DENND4C	9	19346465	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	13583298	19346465	121866966	49	57280										
FRMPD1	0	genome.wustl.edu	37	chr9	37740228	37740228	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gaacagccccacacctgaggTggctaggaggggccccagca	14	14	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	37740228	37740228	T	A	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.1703	p.V568E	0.008	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	13	0	0	6	6	50	-	-	-	A	37740228	T	A	37740228	3	1	665	1	0	0	0	0	1	0	0	0	6106	1696	59	5	1757	5	FRMPD1	9	37740228	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	18393763	37740228	103473203	50	57281										
RMI1	0	genome.wustl.edu	37	chr9	86616601	86616601	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aaaacattcccagagttacaGatgttctagatcctgcatta	6	9	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	86616601	86616601	G	A	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	missense	c.700	p.D234N	0.275	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	36	0	0	38	11	22.45	-	-	-	A	86616601	G	A	86616601	3	1	665	1	0	0	0	0	1	0	0	0	13481	942	33	2	702	2	RMI1	9	86616601	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	48876373	86616601	54596830	51	57282										
FAM22F	0	genome.wustl.edu	37	chr9	97082499	97082499	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggcaagcccaccttggtgacAaagtcttcctgggaacacag	11	12	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	97082499	97082499	A	T	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.1359	p.F453L	0.033	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	32	0	0	50	12	19.35	-	-	-	T	97082499	A	T	97082499	3	4	665	1	0	0	0	0	1	0	0	0	5587	127	5	5	923	5	FAM22F	9	97082499	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	10465898	97082499	44130932	52	57283										
COL5A1	0	genome.wustl.edu	37	chr9	137687118	137687118	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atctgtccagggtccgagggGtgaaagaggcccccggggca	17	11	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	9	137687118	137687118	G	C	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.2756	p.G919A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	35	0	0	25	6	19.35	-	-	-	C	137687118	G	C	137687118	3	2	665	1	0	0	0	0	1	0	0	0	3726	1261	44	4	2890	4	COL5A1	9	137687118	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	40604619	137687118	3526313	53	57284										
TIMM23	0	genome.wustl.edu	37	chr10	51592391	51592391	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tcatcacagcaaatcaaaatCtccaatttttcaaactaatt	1	10	5	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	10	51592391	51592391	C	G	SNP	TIMM23	ENST00000485812	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TIMM23	HGNC	ENSG00000138297	11	0	0	10	15	60	-	-	-	G	51592391	C	G	51592391	1	3	665	0	1	0	0	0	0	0	0	0	16006	928	32	2		2	TIMM23	10	51592391	RNA	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		51592391	83942356	54	57285										
AGAP5	0	genome.wustl.edu	37	chr10	75435124	75435124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gatggcttggacccaggcatCccgctcctcatacgtcgtgg	12	14	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	10	75435124	75435124	C	G	SNP	AGAP5	ENST00000374094	human	ensembl	69_37n	-1	known	missense	c.1294	p.D432H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650	20	0	0	17	8	32	-	-	-	G	75435124	C	G	75435124	3	3	665	1	0	0	0	0	1	0	0	0	371	855	30	2	770	2	AGAP5	10	75435124	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	23842733	75435124	60099623	55	57286										
TSPAN14	0	genome.wustl.edu	37	chr10	82264498	82264498	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gcttagttggctggagttgtCttccttggagtcgggctgtg	16	7	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	10	82264498	82264498	C	G	SNP	TSPAN14	ENST00000372156	human	ensembl	69_37n	1	known	silent	c.96	p.V32	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN14	HGNC	ENSG00000108219	50	0	0	66	17	20.48	-	-	-	G	82264498	C	G	82264498	2	3	665	1	0	0	0	0	0	0	0	1	16734	900	32	2		2	TSPAN14	10	82264498	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	6829374	82264498	53270249	56	57287										
LOXL4	0	genome.wustl.edu	37	chr10	100017441	100017441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ccatgttagggacattgcacCtgacagcagcatcattctca	8	12	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	10	100017441	100017441	C	G	SNP	LOXL4	ENST00000260702	human	ensembl	69_37n	-1	known	missense	c.1226	p.R409T	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL4	HGNC	ENSG00000138131	22	0	0	10	20	66.67	-	-	-	G	100017441	C	G	100017441	3	3	665	1	0	0	0	0	1	0	0	0	8968	681	24	4	1076	4	LOXL4	10	100017441	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	17752943	100017441	35517306	57	57288										
DMBT1	0	genome.wustl.edu	37	chr10	124389917	124389917	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	taccaggcaaatatttacatCttcttacaaccgaatgacca	4	11	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	10	124389917	124389917	C	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.5936	p.S1979C	0.704	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	56	0	0	62	12	16.22	-	-	-	G	124389917	C	G	124389917	3	3	665	1	0	0	0	0	1	0	0	0	4613	913	32	2	5727	2	DMBT1	10	124389917	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	24372476	124389917	11144830	58	57289										
WT1	0	genome.wustl.edu	37	chr11	32410657	32410657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctgatgcatgttgtgatggcGgactaattcatctgaccggg	13	8	2	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	32410657	32410657	G	A	SNP	WT1	ENST00000332351	human	ensembl	69_37n	-1	known	missense	c.1501	p.R501C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,prints_Wilms_tumour,pfscan_Znf_C2H2	-	no_errors	WT1	HGNC	ENSG00000184937	61	0	0	101	18	15.13	-	-	-	A	32410657	G	A	32410657	3	1	665	1	0	0	0	0	1	0	0	0	17505	1116	39	1	56	1	WT1	11	32410657	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		32410657	102595859	59	57290										
CRY2	0	genome.wustl.edu	37	chr11	45891248	45891248	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggcaagacaggcttcccttgGattgatgccatcatgaccca	10	12	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	45891248	45891248	G	C	SNP	CRY2	ENST00000443527	human	ensembl	69_37n	1	known	missense	c.1137	p.W379C	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	23	0	0	24	5	17.24	-	-	-	C	45891248	G	C	45891248	3	2	665	1	0	0	0	0	1	0	0	0	3934	1183	41	2	1199	2	CRY2	11	45891248	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	13480591	45891248	89115268	60	57291										
NUP160	0	genome.wustl.edu	37	chr11	47814408	47814408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gtcgtaaacaattgagagcaGccagataacagttgccttgt	10	8	0	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	47814408	47814408	G	A	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.3380	p.A1127V	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	44	0	0	45	33	42.31	-	-	-	A	47814408	G	A	47814408	3	1	665	1	0	0	0	0	1	0	0	0	10830	971	34	4	966	4	NUP160	11	47814408	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	1923160	47814408	87192108	61	57292										
OR5M11	0	genome.wustl.edu	37	chr11	56310392	56310392	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cggtcataggccattgctgcCagcatgtaaaactcagtgag	11	10	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	56310392	56310392	C	A	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	silent	c.342	p.L114	0.812	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	33	0	0	23	15	39.47	-	-	-	A	56310392	C	A	56310392	2	1	665	1	0	0	0	0	0	0	0	1	11247	581	21	4		4	OR5M11	11	56310392	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	8495984	56310392	78696124	62	57293										
SLC43A3	0	genome.wustl.edu	37	chr11	57177571	57177571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cgaaggcaccgtcgagcagaGggccaccgccaaagtggagg	16	12	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	57177571	57177571	G	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	missense	c.1084	p.L362F	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	29	0	0	15	9	37.5	-	-	-	A	57177571	G	A	57177571	3	1	665	1	0	0	0	0	1	0	0	0	14723	1000	35	4	403	4	SLC43A3	11	57177571	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	867179	57177571	77828945	63	57294										
ANO1	0	genome.wustl.edu	37	chr11	69950207	69950207	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aagtggctgagcacaggcccCagaccatgaagagactctcc	11	13	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	69950207	69950207	C	G	SNP	ANO1	ENST00000355303	human	ensembl	69_37n	1	known	missense	c.643	p.Q215E	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620	34	0	0	13	9	40.91	-	-	-	G	69950207	C	G	69950207	3	3	665	1	0	0	0	0	1	0	0	0	694	595	21	4	657	4	ANO1	11	69950207	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	12772636	69950207	65056309	64	57295										
UCP3	0	genome.wustl.edu	37	chr11	73718048	73718048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgcccccaggaacttcacagCcatggtgggaggcacgtctg	13	13	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	73718048	73718048	C	T	SNP	UCP3	ENST00000314032	human	ensembl	69_37n	-1	known	missense	c.40	p.A14T	0.005	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	UCP3	HGNC	ENSG00000175564	26	0	0	15	15	50	-	-	-	T	73718048	C	T	73718048	3	4	665	1	0	0	0	0	1	0	0	0	17029	739	26	4	926	4	UCP3	11	73718048	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	3767841	73718048	61288468	65	57296										
MYO7A	0	genome.wustl.edu	37	chr11	76903310	76903310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aggagtcaagtttggggagtAcaggtgtgagaaggtgagtg	19	2	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	76903310	76903310	A	G	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.4139	p.Y1380C	1.000	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	28	0	0	40	7	14.89	-	-	-	G	76903310	A	G	76903310	3	3	665	1	0	0	0	0	1	0	0	0	10154	391	14	5	4291	5	MYO7A	11	76903310	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	3185262	76903310	58103206	66	57297										
KBTBD3	0	genome.wustl.edu	37	chr11	105929688	105929688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cataaaagacattttgttctCtaaaattctgtagtacactt	4	7	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	105929688	105929688	C	G	SNP	KBTBD3	ENST00000526793	human	ensembl	69_37n	-1	known	missense	c.137	p.R46T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD3	HGNC	ENSG00000182359	56	0	0	29	9	23.68	-	-	-	G	105929688	C	G	105929688	3	3	665	1	0	0	0	0	1	0	0	0	8048	913	32	2	1709	2	KBTBD3	11	105929688	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	29026378	105929688	29076828	67	57298										
MLL	0	genome.wustl.edu	37	chr11	118344879	118344879	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atctagcactgttaaacattCcacttcctccataggctcca	4	14	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	11	118344879	118344879	C	G	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.3005	p.S1002C	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	35	0	0	13	13	50	-	-	-	G	118344879	C	G	118344879	3	3	665	1	0	0	0	0	1	0	0	0	9691	855	30	2	3015	2	MLL	11	118344879	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	12415191	118344879	16661637	68	57299										
CHD4	0	genome.wustl.edu	37	chr12	6710551	6710551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	caccatgctctccaccacagCtaccgctgctgctgccgcag	8	19	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	12	6710551	6710551	C	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.703	p.A235P	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	16	0	0	5	14	73.68	-	-	-	G	6710551	C	G	6710551	3	3	665	1	0	0	0	0	1	0	0	0	3356	797	28	4	5175	4	CHD4	12	6710551	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		6710551	127141344	69	57300										
CHD4	0	genome.wustl.edu	37	chr12	6711295	6711295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cctcctcctccacaaactctGgcccctccccagagctgtcc	5	22	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	12	6711295	6711295	G	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.269	p.P90Q	0.891	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	25	0	0	15	8	34.78	-	-	-	T	6711295	G	T	6711295	3	4	665	1	0	0	0	0	1	0	0	0	3356	1348	47	4	5617	4	CHD4	12	6711295	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	744	6711295	127140600	70	57301										
FAM186B	0	genome.wustl.edu	37	chr12	49994357	49994357	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	catcggttcctgttggctttCctccatgactgtttctttcc	7	13	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	12	49994357	49994357	C	G	SNP	FAM186B	ENST00000257894	human	ensembl	69_37n	-1	known	missense	c.1066	p.E356Q	0.154	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436	28	0	0	30	10	25	-	-	-	G	49994357	C	G	49994357	3	3	665	1	0	0	0	0	1	0	0	0	5553	864	30	2	1631	2	FAM186B	12	49994357	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	43283062	49994357	83857538	71	57302										
PAN2	0	genome.wustl.edu	37	chr12	56721845	56721845	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atgatggtgactccaggcgtCtctactgcatactggagagg	13	9	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	12	56721845	56721845	C	G	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	missense	c.585	p.E195D	0.128	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	29	0	0	20	5	20	-	-	-	G	56721845	C	G	56721845	3	3	665	1	0	0	0	0	1	0	0	0	11487	912	32	2	3111	2	PAN2	12	56721845	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	6727488	56721845	77130050	72	57303										
MYBPC1	0	genome.wustl.edu	37	chr12	102056175	102056175	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gaagaaacaaagctccaggtGgatgaggctgaattttgatc	12	6	0	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	12	102056175	102056175	G	C	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	missense	c.2072	p.W691S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	36	0	0	26	6	18.75	-	-	-	C	102056175	G	C	102056175	3	2	665	1	0	0	0	0	1	0	0	0	10083	1357	47	4	2154	4	MYBPC1	12	102056175	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	45334330	102056175	31795720	73	57304										
RNF17	0	genome.wustl.edu	37	chr13	25428135	25428135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctgacataatcagtgaacagAaagtgtctgaatttcaggag	10	6	3	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	25428135	25428135	A	G	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.3463	p.K1155E	0.075	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	33	0	0	29	17	36.96	-	-	-	G	25428135	A	G	25428135	3	3	665	1	0	0	0	0	1	0	0	0	13547	247	9	5	3561	5	RNF17	13	25428135	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09		25428135	89741743	74	57305										
POLR1D	0	genome.wustl.edu	37	chr13	28239878	28239878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttctaattaacacaattaaaAacacattgccctctcataaa	1	10	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	28239878	28239878	A	C	SNP	POLR1D	ENST00000399697	human	ensembl	69_37n	1	novel	missense	c.157	p.N53H	1.000	NULL	NULL	-	no_errors	POLR1D	HGNC	ENSG00000186184	43	0	0	67	16	19.28	-	-	-	C	28239878	A	C	28239878	3	2	665	1	0	0	0	0	1	0	0	0	12286	14	1	5	547	5	POLR1D	13	28239878	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	2811743	28239878	86930000	75	57306			1	98		2	2	23	N	A	8.954039e-05
POLR1D	0	genome.wustl.edu	37	chr13	28239900	28239900	+	Frame_Shift_Del	DEL	A	A	-													0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cacattgccctctcataaagAgcaagaccatgaacaaaaag							TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	28239900	28239900	A	-	DEL	POLR1D	ENST00000399697	human	ensembl	69_37n	1	novel	frame_shift_del	c.179	p.E60fs	1.000	NULL	NULL	-	no_errors	POLR1D	HGNC	ENSG00000186184	47	0	0	68	19	21.59	-	-	-	-	28239900	A	-	28239900	7	5	665	1	0	1	0	1	0	0	0	0	12286	304	11	0	569	0	POLR1D	13	28239900	Frame_Shift_Del	DEL	A	TCGA-C8-A27B-01A-11D-A167-09	22	28239900	86929978	76	57307			1	98		2	2	23	N	A	8.954039e-05
HSPH1	0	genome.wustl.edu	37	chr13	31713136	31713136	+	Splice_Site	DEL	C	C	-													0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttgggggagaaaacgacctaCcattaattcttccaacttgt							TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	31713136	31713136	C	-	DEL	HSPH1	ENST00000445273	human	ensembl	69_37n	-1	known	splice_site_del	c.2094+1	e15+1	1.000	-	-	-	no_errors	HSPH1	HGNC	ENSG00000120694	46	0	0	41	7	14.58	-	-	-	-	31713136	C	-	31713136	8	5	665	1	0	1	0	1	0	0	1	0	7485	521	18	0	503	0	HSPH1	13	31713136	Splice_Site	DEL	C	TCGA-C8-A27B-01A-11D-A167-09	3473236	31713136	83456742	77	57308										
SPG20	0	genome.wustl.edu	37	chr13	36909960	36909960	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gttctccattttgtggctctTgctccatttctgcaaaattg	7	10	3	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	36909960	36909960	T	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.8	p.Q3P	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	43	0	0	37	10	21.28	-	-	-	G	36909960	T	G	36909960	3	3	665	1	0	0	0	0	1	0	0	0	15133	1812	63	5	2024	5	SPG20	13	36909960	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	5196824	36909960	78259918	78	57309										
STOML3	0	genome.wustl.edu	37	chr13	39542611	39542611	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctgcacgggaatccgaacatCtttgatttccactcgggcca	9	13	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	13	39542611	39542611	C	G	SNP	STOML3	ENST00000379631	human	ensembl	69_37n	-1	known	missense	c.577	p.D193H	1.000	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML3	HGNC	ENSG00000133115	22	0	0	18	4	18.18	-	-	-	G	39542611	C	G	39542611	3	3	665	1	0	0	0	0	1	0	0	0	15406	913	32	2	306	2	STOML3	13	39542611	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	2632651	39542611	75627267	79	57310										
RTN1	0	genome.wustl.edu	37	chr14	60212735	60212737	+	In_Frame_Del	DEL	CTC	CTC	-													0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tggtttgtcaggttcacggaCtccttcaggtttaattgaga							TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	14	60212735	60212737	CTC	-	DEL	RTN1	ENST00000267484	human	ensembl	69_37n	-1	known	in_frame_del	c.706_704	p.G235in_frame_del	0.000:0.000:0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	62	0	0	43	21	32.31	-	-	-	-	60212737	CTC	-	60212735	7	5	665	1	0	1	0	1	0	0	0	0	13811	565	20	0	1721	0	RTN1	14	60212735	In_Frame_Del	DEL	CTC	TCGA-C8-A27B-01A-11D-A167-09		60212735	47136805	80	57311										
MEIS2	0	genome.wustl.edu	37	chr15	37390202	37390202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cttgtcccgcttcaaggcgtCgttgacagcggatcccatac	10	14	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	37390202	37390202	C	T	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.211	p.D71N	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	18	0	0	12	9	42.86	-	-	-	T	37390202	C	T	37390202	3	4	665	1	0	0	0	0	1	0	0	0	9539	884	31	1	1329	1	MEIS2	15	37390202	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		37390202	65141190	81	57312										
SLC24A5	0	genome.wustl.edu	37	chr15	48413271	48413271	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aaagggggccaaacatgggcGagaagggctctgttgctcgg	17	8	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	48413271	48413271	G	A	SNP	SLC24A5	ENST00000341459	human	ensembl	69_37n	1	known	silent	c.30	p.A10	0.018	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A5	HGNC	ENSG00000188467	32	0	0	16	6	27.27	-	-	-	A	48413271	G	A	48413271	2	1	665	1	0	0	0	0	0	0	0	1	14558	1045	37	1		1	SLC24A5	15	48413271	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	11023069	48413271	54118121	82	57313										
CLPX	0	genome.wustl.edu	37	chr15	65471352	65471352	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cacctttcccagaattcccaGagcctgatttcttactactt	4	14	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	65471352	65471352	G	C	SNP	CLPX	ENST00000300107	human	ensembl	69_37n	-1	known	missense	c.278	p.S93C	1.000	NULL	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	50	0	0	66	16	19.51	-	-	-	C	65471352	G	C	65471352	3	2	665	1	0	0	0	0	1	0	0	0	3586	942	33	2	1671	2	CLPX	15	65471352	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	17058081	65471352	37060040	83	57314										
NEO1	0	genome.wustl.edu	37	chr15	73428353	73428353	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	agacaattgaagctcaagcaGagcttacagtgcaaggtatg	11	7	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	73428353	73428353	G	C	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.1000	p.E334Q	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	47	0	0	27	43	61.43	-	-	-	C	73428353	G	C	73428353	3	2	665	1	0	0	0	0	1	0	0	0	10408	943	33	2	1018	2	NEO1	15	73428353	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	7957001	73428353	29103039	84	57315										
MORF4L1	0	genome.wustl.edu	37	chr15	79178563	79178563	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	acagcgagaacttcaaaaagCcaatcagtaagtttgttttg	8	7	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	79178563	79178563	C	G	SNP	MORF4L1	ENST00000331268	human	ensembl	69_37n	1	known	missense	c.353	p.A118G	1.000	superfamily_Chromodomain-like,pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_Hist_Nua4_cplx_EAF3/MRG15_su	-	no_errors	MORF4L1	HGNC	ENSG00000185787	56	0	0	32	41	56.16	-	-	-	G	79178563	C	G	79178563	3	3	665	1	0	0	0	0	1	0	0	0	9778	739	26	4	371	4	MORF4L1	15	79178563	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	5750210	79178563	23352829	85	57316										
SH3GL3	0	genome.wustl.edu	37	chr15	84241415	84241415	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aaacttttattgatccacttCagttactacaagataaagat	4	7	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	84241415	84241415	C	T	SNP	SH3GL3	ENST00000324537	human	ensembl	69_37n	1	known	nonsense	c.454	p.Q152*	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SH3GL3	HGNC	ENSG00000140600	35	0	0	37	8	17.78	-	-	-	T	84241415	C	T	84241415	4	4	665	1	0	0	0	0	0	1	0	0	14341	827	29	2	448	2	SH3GL3	15	84241415	Nonsense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	5062852	84241415	18289977	86	57317										
FANCI	0	genome.wustl.edu	37	chr15	89838218	89838218	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gagtttatgcgctatgcagtGaatgtagctctgcagaaggt	13	6	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	89838218	89838218	G	C	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	silent	c.2529	p.V843	0.926	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	52	0	0	35	16	31.37	-	-	-	C	89838218	G	C	89838218	2	2	665	1	0	0	0	0	0	0	0	1	5715	1277	45	2		2	FANCI	15	89838218	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	5596803	89838218	12693174	87	57318										
TTC23	0	genome.wustl.edu	37	chr15	99759224	99759224	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gaggatttgtctggctttttCtgcatgttgttttgcttgca	11	6	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	15	99759224	99759224	C	G	SNP	TTC23	ENST00000262074	human	ensembl	69_37n	-1	known	missense	c.334	p.E112Q	1.000	smart_TPR_repeat	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852	73	0	0	112	28	20	-	-	-	G	99759224	C	G	99759224	3	3	665	1	0	0	0	0	1	0	0	0	16787	922	32	2	1041	2	TTC23	15	99759224	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	9921006	99759224	2772168	88	57319										
ABCA3	0	genome.wustl.edu	37	chr16	2339579	2339579	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tactgcagggcagggagctgGatggcctggatgtccatact	15	9	0	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	16	2339579	2339579	G	T	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	silent	c.2556	p.I852	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	12	0	0	8	5	38.46	-	-	-	T	2339579	G	T	2339579	2	4	665	1	0	0	0	0	0	0	0	1	33	1164	41	2		2	ABCA3	16	2339579	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09		2339579	88015174	89	57320										
ABR	0	genome.wustl.edu	37	chr17	953383	953383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cacttctcatagcacaggatCctcagggactgggagccctc	10	14	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	953383	953383	C	T	SNP	ABR	ENST00000572152	human	ensembl	69_37n	-1	known	missense	c.71	p.G24E	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABR	HGNC	ENSG00000159842	53	0	0	39	23	37.1	-	-	-	T	953383	C	T	953383	3	4	665	1	0	0	0	0	1	0	0	0	99	854	30	2	913	2	ABR	17	953383	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		953383	80241827	90	57321										
ACADVL	0	genome.wustl.edu	37	chr17	7125548	7125548	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttgccaagacaccagttacaGatccagccacaggagccgtg	10	13	0	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	7125548	7125548	G	C	SNP	ACADVL	ENST00000356839	human	ensembl	69_37n	1	known	missense	c.805	p.D269H	1.000	superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADVL	HGNC	ENSG00000072778	15	0	0	21	5	19.23	-	-	-	C	7125548	G	C	7125548	3	2	665	1	0	0	0	0	1	0	0	0	116	942	33	2	839	2	ACADVL	17	7125548	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	6172165	7125548	74069662	91	57322										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	39	0	0	16	28	63.64	-	-	-	C	7578271	T	C	7578271	3	2	665	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	452723	7578271	73616939	92	57323										
MYH13	0	genome.wustl.edu	37	chr17	10222306	10222306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gggtggcctcctccaggtccCtgcgcattttctggaactca	11	14	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	10222306	10222306	C	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.3539	p.R1180K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	47	0	0	16	40	71.43	-	-	-	T	10222306	C	T	10222306	3	4	665	1	0	0	0	0	1	0	0	0	10104	681	24	4	2337	4	MYH13	17	10222306	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	2644035	10222306	70972904	93	57324										
SUPT6H	0	genome.wustl.edu	37	chr17	27022374	27022374	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgttctgtggatctaggtggGaatgactgttcactgccgca	13	8	3	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	27022374	27022374	G	C	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.3779	p.G1260A	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pirsf_TF_Spt6,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	35	0	0	16	11	40.74	-	-	-	C	27022374	G	C	27022374	3	2	665	1	0	0	0	0	1	0	0	0	15491	1174	41	2	3889	2	SUPT6H	17	27022374	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	16800068	27022374	54172836	94	57325										
ACLY	0	genome.wustl.edu	37	chr17	40030139	40030139	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	agacctcagtgatgggcatgCccgcgtagatgagctcctgt	13	11	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	40030139	40030139	C	G	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.2567	p.G856A	1.000	superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	20	0	0	15	6	28.57	-	-	-	G	40030139	C	G	40030139	3	3	665	1	0	0	0	0	1	0	0	0	143	739	26	4	766	4	ACLY	17	40030139	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	13007765	40030139	41165071	95	57326										
ACLY	0	genome.wustl.edu	37	chr17	40030212	40030212	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggcaggtttgcggatcaaacCaagctcctgggcagagatgg	15	9	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	40030212	40030212	C	G	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.2494	p.G832R	1.000	superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	21	0	0	11	10	47.62	-	-	-	G	40030212	C	G	40030212	3	3	665	1	0	0	0	0	1	0	0	0	143	594	21	4	839	4	ACLY	17	40030212	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	73	40030212	41164998	96	57327										
NPEPPS	0	genome.wustl.edu	37	chr17	45689957	45689957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aacagattctctccgctgatCtgaggagtcctgtaggtttt	10	9	2	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	45689957	45689957	C	G	SNP	NPEPPS	ENST00000322157	human	ensembl	69_37n	1	known	missense	c.2227	p.L743V	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279	36	0	0	28	13	31.71	-	-	-	G	45689957	C	G	45689957	3	3	665	1	0	0	0	0	1	0	0	0	10647	912	32	2	2297	2	NPEPPS	17	45689957	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	5659745	45689957	35505253	97	57328										
EFCAB3	0	genome.wustl.edu	37	chr17	60484535	60484535	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aggagcctttgcatttctttGaggattattttttccataaa	7	6	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	17	60484535	60484535	G	C	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	missense	c.985	p.E329Q	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	30	0	0	50	15	23.08	-	-	-	C	60484535	G	C	60484535	3	2	665	1	0	0	0	0	1	0	0	0	4970	1291	45	2	1023	2	EFCAB3	17	60484535	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	14794578	60484535	20710675	98	57329										
TXNDC2	0	genome.wustl.edu	37	chr18	9887863	9887863	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aggaggactttgaggcatcaCtgaaggaggccggggagagg	19	6	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	18	9887863	9887863	C	A	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	1	known	missense	c.1387	p.L463M	0.094	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	24	0	0	22	13	37.14	-	-	-	A	9887863	C	A	9887863	3	1	665	1	0	0	0	0	1	0	0	0	16894	564	20	4	1393	4	TXNDC2	18	9887863	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		9887863	68189385	99	57330										
ZNF519	0	genome.wustl.edu	37	chr18	14105980	14105980	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggattggtaaaatactttttCacattcattacaattgtaat	5	5	2	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	18	14105980	14105980	C	G	SNP	ZNF519	ENST00000590202	human	ensembl	69_37n	-1	known	missense	c.559	p.E187Q	0.845	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	44	0	0	33	10	23.26	-	-	-	G	14105980	C	G	14105980	3	3	665	1	0	0	0	0	1	0	0	0	18060	835	29	2	1067	2	ZNF519	18	14105980	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	4218117	14105980	63971268	100	57331										
ANKRD29	0	genome.wustl.edu	37	chr18	21197771	21197771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	taccctttgttggctgctttCaataatgctgttgtgccatc	8	10	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	18	21197771	21197771	C	G	SNP	ANKRD29	ENST00000592179	human	ensembl	69_37n	-1	known	missense	c.648	p.L216F	0.993	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD29	HGNC	ENSG00000154065	62	0	0	86	21	19.63	-	-	-	G	21197771	C	G	21197771	3	3	665	1	0	0	0	0	1	0	0	0	657	825	29	2	269	2	ANKRD29	18	21197771	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	7091791	21197771	56879477	101	57332										
FEM1A	0	genome.wustl.edu	37	chr19	4793084	4793084	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tacgccgactcgggcaatttCgagcgctgcatccgcttgtg	12	13	0	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	4793084	4793084	C	G	SNP	FEM1A	ENST00000269856	human	ensembl	69_37n	1	known	missense	c.1218	p.F406L	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965	11	0	0	7	10	58.82	-	-	-	G	4793084	C	G	4793084	3	3	665	1	0	0	0	0	1	0	0	0	5855	883	31	3	1220	3	FEM1A	19	4793084	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		4793084	54335899	102	57333										
FUT6	0	genome.wustl.edu	37	chr19	5832255	5832255	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttgtacatgacctctcggtgGtgcacgatgaccgcgtctgc	12	12	2	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	5832255	5832255	G	C	SNP	FUT6	ENST00000592563	human	ensembl	69_37n	-1	known	missense	c.324	p.H108Q	0.983	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT6	HGNC	ENSG00000156413	21	0	0	8	20	71.43	-	-	-	C	5832255	G	C	5832255	3	2	665	1	0	0	0	0	1	0	0	0	6157	1252	44	4	759	4	FUT6	19	5832255	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	1039171	5832255	53296728	103	57334										
ACSBG2	0	genome.wustl.edu	37	chr19	6183146	6183146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gatcactgtcactcttttatCagtgggactgcgcccctcaa	8	13	5	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	6183146	6183146	C	G	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	1	known	missense	c.1185	p.I395M	0.955	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	26	0	0	22	11	33.33	-	-	-	G	6183146	C	G	6183146	3	3	665	1	0	0	0	0	1	0	0	0	174	816	29	2	1219	2	ACSBG2	19	6183146	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	350891	6183146	52945837	104	57335										
MUC16	0	genome.wustl.edu	37	chr19	9085748	9085748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tggagaggatgtgctgcttcCagaagagactgaattctcat	12	7	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	9085748	9085748	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.6067	p.G2023R	0.172	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	43	0	0	44	16	26.67	-	-	-	T	9085748	C	T	9085748	3	4	665	1	0	0	0	0	1	0	0	0	10045	603	21	4	37792	4	MUC16	19	9085748	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	2902602	9085748	50043235	105	57336										
ZNF121	0	genome.wustl.edu	37	chr19	9677204	9677204	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cattgataaggtttctctccAgtatgaattcttacatgttc	6	8	2	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	9677204	9677204	A	G	SNP	ZNF121	ENST00000320451	human	ensembl	69_37n	-1	known	silent	c.585	p.T195	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961	23	0	0	26	10	27.78	-	-	-	G	9677204	A	G	9677204	2	3	665	1	0	0	0	0	0	0	0	1	17815	175	7	5		5	ZNF121	19	9677204	Silent	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	591456	9677204	49451779	106	57337										
RPL18A	0	genome.wustl.edu	37	chr19	17972952	17972952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gaacttcgggatctggctgcGctatgactcccggagcggca	14	12	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	17972952	17972952	G	A	SNP	RPL18A	ENST00000222247	human	ensembl	69_37n	1	known	missense	c.248	p.R83H	1.000	pfam_Ribosomal_L18a/LX	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640	23	0	0	21	21	50	-	-	-	A	17972952	G	A	17972952	3	1	665	1	0	0	0	0	1	0	0	0	13651	1087	38	1	258	1	RPL18A	19	17972952	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	8295748	17972952	41156031	107	57338										
ZNF43	0	genome.wustl.edu	37	chr19	21992075	21992075	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cttcacatttgtagagtttgTatctagtataatttttttta	5	4	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	21992075	21992075	T	C	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.764	p.Y255C	0.973	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	48	0	0	44	10	18.52	-	-	-	C	21992075	T	C	21992075	3	2	665	1	0	0	0	0	1	0	0	0	17999	1638	57	5	1669	5	ZNF43	19	21992075	Missense_Mutation	SNP	T	TCGA-C8-A27B-01A-11D-A167-09	4019123	21992075	37136908	108	57339										
ZNF587	0	genome.wustl.edu	37	chr19	58371075	58371075	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	acaccagagacttcacactgGggaaagaccttacaattgta	8	10	1	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	19	58371075	58371075	G	C	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.1295	p.G432A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	49	0	0	39	18	31.58	-	-	-	C	58371075	G	C	58371075	3	2	665	1	0	0	0	0	1	0	0	0	18116	1232	43	4	1305	4	ZNF587	19	58371075	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	36379000	58371075	757908	109	57340										
GZF1	0	genome.wustl.edu	37	chr20	23350861	23350861	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	gctttcggataaattgctgtCttttgcagaaaatggccatt	9	7	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	20	23350861	23350861	C	T	SNP	GZF1	ENST00000338121	human	ensembl	69_37n	1	known	missense	c.1919	p.S640F	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	28	0	0	29	9	23.68	-	-	-	T	23350861	C	T	23350861	3	4	665	1	0	0	0	0	1	0	0	0	6965	913	32	2	1937	2	GZF1	20	23350861	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		23350861	39674659	110	57341										
DNMT3B	0	genome.wustl.edu	37	chr20	31374344	31374344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	acaacagtgtctccagccggGagaggcacaggccttcccca	11	15	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	20	31374344	31374344	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	69_37n	1	known	missense	c.343	p.E115K	0.995	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3B	HGNC	ENSG00000088305	17	0	0	6	14	70	-	-	-	A	31374344	G	A	31374344	3	1	665	1	0	0	0	0	1	0	0	0	4712	1175	41	2	397	2	DNMT3B	20	31374344	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	8023483	31374344	31651176	111	57342										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	21	45993851	45993851	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	silent	c.216	p.C72	0.141	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	9	0	0	7	5	41.67	-	-	-	T	45993851	C	T	45993851	2	4	665	1	0	0	0	0	0	0	0	1	8564	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		45993851	2136044	112	57343										
SLC25A1	0	genome.wustl.edu	37	chr22	19164129	19164129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	cacatccagaggagtgtttcCaaagacactggctgcgcctg	11	12	0	2			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	19164129	19164129	C	T	SNP	SLC25A1	ENST00000215882	human	ensembl	69_37n	-1	known	missense	c.709	p.G237R	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075	22	0	0	9	15	62.5	-	-	-	T	19164129	C	T	19164129	3	4	665	1	0	0	0	0	1	0	0	0	14560	603	21	4	238	4	SLC25A1	22	19164129	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09		19164129	32140437	113	57344										
SLC25A1	0	genome.wustl.edu	37	chr22	19164682	19164682	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tggaagaatcctctgtacttGgggtttggggaggtctggtc	16	6	2	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	19164682	19164682	G	C	SNP	SLC25A1	ENST00000215882	human	ensembl	69_37n	-1	known	silent	c.477	p.P159	0.982	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075	24	0	0	49	14	22.22	-	-	-	C	19164682	G	C	19164682	2	2	665	1	0	0	0	0	0	0	0	1	14560	1335	47	4		4	SLC25A1	22	19164682	Silent	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	553	19164682	32139884	114	57345										
ADORA2A	0	genome.wustl.edu	37	chr22	24837096	24837096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	catctacgcctaccgtatccGcgagttccgccagaccttcc	7	18	1	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	24837096	24837096	G	C	SNP	ADORA2A	ENST00000337539	human	ensembl	69_37n	1	known	missense	c.878	p.R293P	0.999	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271	14	0	0	24	9	27.27	-	-	-	C	24837096	G	C	24837096	3	2	665	1	0	0	0	0	1	0	0	0	327	1087	38	3	884	3	ADORA2A	22	24837096	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	5672414	24837096	26467470	115	57346										
RPL3	0	genome.wustl.edu	37	chr22	39711522	39711522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ccgttcacctggatctccatCaggtgggccttcttctggcg	11	14	5	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	39711522	39711522	C	G	SNP	RPL3	ENST00000427905	human	ensembl	69_37n	-1	putative	missense	c.634	p.D212H	1.000	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPL3	HGNC	ENSG00000100316	26	0	0	28	13	31.71	-	-	-	G	39711522	C	G	39711522	3	3	665	1	0	0	0	0	1	0	0	0	13665	813	29	2	695	2	RPL3	22	39711522	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	14874426	39711522	11593044	116	57347										
EP300	0	genome.wustl.edu	37	chr22	41566475	41566475	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgattatatcttccattgccAtcctcctgaccagaagatac	5	12	1	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	41566475	41566475	A	C	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.4352	p.H1451P	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	43	0	0	40	34	45.95	-	-	-	C	41566475	A	C	41566475	3	2	665	1	0	0	0	0	1	0	0	0	5185	217	8	5	4458	5	EP300	22	41566475	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	1854953	41566475	9738091	117	57348										
NHP2L1	0	genome.wustl.edu	37	chr22	42071108	42071108	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggcacattcttgtcttcacaCagcagcggcaggtgcagaat	11	11	3	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	22	42071108	42071108	C	A	SNP	NHP2L1	ENST00000215956	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,pfam_RNase_P_Pop3,prints_Ribosomal_L7Ae/L8/Nhp2	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,pfam_RNase_P_Pop3,prints_H/ACA_rnp_Nhp2_euk,prints_Ribosomal_L7Ae/L8/Nhp2,prints_Ribosomal_L7Ae_prok	-	no_errors	NHP2L1	HGNC	ENSG00000100138	34	0	0	32	11	25.58	-	-	-	A	42071108	C	A	42071108	2	1	665	1	0	0	0	0	0	0	0	1	10482	465	17	4		4	NHP2L1	22	42071108	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	504633	42071108	9233458	118	57349										
CTPS2	0	genome.wustl.edu	37	chrX	16720990	16720990	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	atgatccctttaccaatgccTgagatgaccccacccgtgac	7	15	0	4			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	16720990	16720990	T	G	SNP	CTPS2	ENST00000359276	human	ensembl	69_37n	-1	known	silent	c.36	p.S12	0.075	pfam_CTP_synthase_N,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE_1,pfam_Peptidase_C26,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230	57	0	0	40	16	28.57	-	-	-	G	16720990	T	G	16720990	2	3	665	1	0	0	0	0	0	0	0	1	4055	1567	55	5		5	CTPS2	23	16720990	Silent	SNP	T	TCGA-C8-A27B-01A-11D-A167-09		16720990	138549570	119	57350										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29417323	29417323	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttgtattcaaaagagatactCtgcttataagagaagtcaga	8	5	3	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	29417323	29417323	C	G	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.601	p.L201V	0.790	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	45	0	0	28	14	33.33	-	-	-	G	29417323	C	G	29417323	3	3	665	1	0	0	0	0	1	0	0	0	7715	912	32	2	615	2	IL1RAPL1	23	29417323	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	12696333	29417323	125853237	120	57351										
HUWE1	0	genome.wustl.edu	37	chrX	53631744	53631744	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ctccagggaggagaggatggAgtccaactgaaggagaccct	15	9	0	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	53631744	53631744	A	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.2548	p.S850A	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	39	0	0	30	13	30.23	-	-	-	C	53631744	A	C	53631744	3	2	665	1	0	0	0	0	1	0	0	0	7515	304	11	5	10812	5	HUWE1	23	53631744	Missense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	24214421	53631744	101638816	121	57352										
ALAS2	0	genome.wustl.edu	37	chrX	55046843	55046843	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	tgagtccttctggtgcagctCagccagctcctgctcaagct	10	14	3	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	55046843	55046843	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	missense	c.733	p.E245K	0.999	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	23	0	0	24	8	25	-	-	-	T	55046843	C	T	55046843	3	4	665	1	0	0	0	0	1	0	0	0	485	835	29	2	1054	2	ALAS2	23	55046843	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	1415099	55046843	100223717	122	57353										
FRMD7	0	genome.wustl.edu	37	chrX	131212589	131212589	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	aggcataataccaacctgctGacctgtacaaggaatatagg	9	9	0	1			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	131212589	131212589	G	T	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	missense	c.1456	p.Q486K	1.000	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	31	0	0	46	21	31.34	-	-	-	T	131212589	G	T	131212589	3	4	665	1	0	0	0	0	1	0	0	0	6104	1299	45	2	692	2	FRMD7	23	131212589	Missense_Mutation	SNP	G	TCGA-C8-A27B-01A-11D-A167-09	76165746	131212589	24057971	123	57354										
CNGA2	0	genome.wustl.edu	37	chrX	150911600	150911600	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ggctgctggtcaaagataccAagaaactgcgagacaactac	10	10	1	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	150911600	150911600	A	T	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	1	known	nonsense	c.625	p.K209*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	21	0	0	30	7	18.92	-	-	-	T	150911600	A	T	150911600	4	4	665	1	0	0	0	0	0	1	0	0	3627	131	5	5	647	5	CNGA2	23	150911600	Nonsense_Mutation	SNP	A	TCGA-C8-A27B-01A-11D-A167-09	19699011	150911600	4358960	124	57355										
GDI1	0	genome.wustl.edu	37	chrX	153668821	153668821	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ccatatttatacccgctctaCggcttgggcgagctgcccca	9	15	1	0			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	153668821	153668821	C	T	SNP	GDI1	ENST00000447750	human	ensembl	69_37n	1	known	silent	c.687	p.Y229	0.988	pfam_GDP_dissociation_inhibitor,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879	50	0	0	40	12	23.08	-	-	-	T	153668821	C	T	153668821	2	4	665	1	0	0	0	0	0	0	0	1	6372	547	19	1		1	GDI1	23	153668821	Silent	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	2757221	153668821	1601739	125	57356										
GAB3	0	genome.wustl.edu	37	chrX	153924265	153924265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.317460317460317	40	7.41828555189739e-10	2.99099099099099	3.3078332569858	2.38796861377507	0.000196626228922384	0.00616249451758534	27	ttgcagaattaataccatttCtttctggagagagaaagctg	9	6	2	3			TCGA-C8-A27B-01A-11D-A167-09	TCGA-C8-A27B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11e43e41-54b8-4232-b078-5062288d3868	922226ba-6244-4953-ad42-f4daa474c288	X	153924265	153924265	C	G	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.1457	p.R486T	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	38	0	0	54	8	12.9	-	-	-	G	153924265	C	G	153924265	3	3	665	1	0	0	0	0	1	0	0	0	6199	913	32	2	318	2	GAB3	23	153924265	Missense_Mutation	SNP	C	TCGA-C8-A27B-01A-11D-A167-09	255444	153924265	1346295	126	57357										
CDK11A	0	genome.wustl.edu	37	chr1	1635286	1635286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaacactttgttgatctgatCgatttccgaattcccgggga	10	9	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	1635286	1635286	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	missense	c.1888	p.D630N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	103	1	0.96	146	31	17.51	-	-	-	T	1635286	C	T	1635286	3	4	666	1	0	0	0	0	1	0	0	0	3155	884	31	1	470	1	CDK11A	1	1635286	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		1635286	247615335	1	57358										
RNF186	0	genome.wustl.edu	37	chr1	20141288	20141288	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cagctgccccaccaccgcctCatggtcgcgcaggctgcaga	11	18	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	20141288	20141288	C	T	SNP	RNF186	ENST00000375121	human	ensembl	69_37n	-1	known	missense	c.307	p.E103K	0.576	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF186	HGNC	ENSG00000178828	27	0	0	47	6	11.32	-	-	-	T	20141288	C	T	20141288	3	4	666	1	0	0	0	0	1	0	0	0	13555	835	29	2	380	2	RNF186	1	20141288	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	18506002	20141288	229109333	2	57359										
POMGNT1	0	genome.wustl.edu	37	chr1	46654475	46654475	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtctctgagtgagtctgtgtCagcatgtgggccccagctgg	15	10	3	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	46654475	46654475	C	G	SNP	POMGNT1	ENST00000371986	human	ensembl	69_37n	-1	known	silent	c.2163	p.L721	1.000	NULL	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998	27	0	0	29	10	25.64	-	-	-	G	46654475	C	G	46654475	2	3	666	1	0	0	0	0	0	0	0	1	12317	841	29	2		2	POMGNT1	1	46654475	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	26513187	46654475	202596146	3	57360										
POMGNT1	0	genome.wustl.edu	37	chr1	46656456	46656456	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtgcttcttgaagtaggcctCctggagtgggtatgagagtg	16	6	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	46656456	46656456	C	G	SNP	POMGNT1	ENST00000371986	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514Q	1.000	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998	36	0	0	43	15	25.86	-	-	-	G	46656456	C	G	46656456	3	3	666	1	0	0	0	0	1	0	0	0	12317	869	30	2	462	2	POMGNT1	1	46656456	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1981	46656456	202594165	4	57361										
PGM1	0	genome.wustl.edu	37	chr1	64100532	64100532	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atgtaaagaagatcctctgtGaagaactcggtgcccctgcg	11	10	1	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	64100532	64100532	G	T	SNP	PGM1	ENST00000371083	human	ensembl	69_37n	1	known	nonsense	c.769	p.E257*	1.000	pfam_A-D-PHexomutase_a/b/a-II	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739	33	0	0	34	5	12.82	-	-	-	T	64100532	G	T	64100532	4	4	666	1	0	0	0	0	0	1	0	0	11871	1291	45	2	1037	2	PGM1	1	64100532	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	17444076	64100532	185150089	5	57362										
OLFM3	0	genome.wustl.edu	37	chr1	102462320	102462320	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ataccttggaaggatctaatCcggcaaacaaagacagcagc	9	10	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	102462320	102462320	C	G	SNP	OLFM3	ENST00000370103	human	ensembl	69_37n	-1	known	missense	c.53	p.G18A	0.999	superfamily_Quino_amine_DH_bsu	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM3	HGNC	ENSG00000118733	75	0	0	91	26	22.22	-	-	-	G	102462320	C	G	102462320	3	3	666	1	0	0	0	0	1	0	0	0	10927	855	30	2	1347	2	OLFM3	1	102462320	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	38361788	102462320	146788301	6	57363										
SYT6	0	genome.wustl.edu	37	chr1	114682373	114682373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cacggccgcctccaggaagcCcagggtgctggggtccttca	14	15	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	114682373	114682373	C	T	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	missense	c.376	p.G126S	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	20	0	0	23	4	14.81	-	-	-	T	114682373	C	T	114682373	3	4	666	1	0	0	0	0	1	0	0	0	15570	623	22	4	1180	4	SYT6	1	114682373	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	12220053	114682373	134568248	7	57364										
CA14	0	genome.wustl.edu	37	chr1	150233919	150233919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgtggaaacaatgcccagtcGcccatcgatattcagacaga	9	11	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	150233919	150233919	G	A	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	silent	c.138	p.S46	0.794	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	27	0	0	38	28	41.79	-	-	-	A	150233919	G	A	150233919	2	1	666	1	0	0	0	0	0	0	0	1	2540	1074	38	1		1	CA14	1	150233919	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	35551546	150233919	99016702	8	57365										
POGZ	0	genome.wustl.edu	37	chr1	151381003	151381003	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	caaggcgctgggaggtgtatCattagaggatacaggaacag	15	6	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	151381003	151381003	C	T	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.2116	p.D706N	0.927	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	17	0	0	20	6	23.08	-	-	-	T	151381003	C	T	151381003	3	4	666	1	0	0	0	0	1	0	0	0	12260	826	29	2	2140	2	POGZ	1	151381003	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1147084	151381003	97869618	9	57366										
RAB13	0	genome.wustl.edu	37	chr1	153955601	153955602	+	RNA	INS	-	-	A													0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	caagagcaaaacttcatctcINSaaaaaaaaaaaagttaggtc							TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	153955601	153955602	-	A	INS	RAB13	ENST00000462680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.027:0.029	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	11	0	0	12	3	20	-	-	-	A	153955602	-	A	153955601	6	5	666	0	1	1	1	0	0	0	0	0	12982	841	29	0		0	RAB13	1	153955601	RNA	INS	-	TCGA-C8-A3M7-01A-12D-A21Q-09	2574598	153955601	95295020	10	57367										
NUP210L	0	genome.wustl.edu	37	chr1	154108376	154108376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccagtatagccactttctcaGaatgagacccgttaagtgca	8	11	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	154108376	154108376	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.923	p.S308F	0.001	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	63	0	0	75	12	13.79	-	-	-	A	154108376	G	A	154108376	3	1	666	1	0	0	0	0	1	0	0	0	10834	942	33	2	4879	2	NUP210L	1	154108376	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	152775	154108376	95142245	11	57368										
GPATCH4	0	genome.wustl.edu	37	chr1	156565376	156565376	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atctgagacctttccttcttGatgtcgccttttcttcttct	5	12	5	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	156565376	156565376	G	A	SNP	GPATCH4	ENST00000438976	human	ensembl	69_37n	-1	known	nonsense	c.757	p.Q253*	0.001	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818	84	0	0	125	30	19.23	-	-	-	A	156565376	G	A	156565376	4	1	666	1	0	0	0	0	0	1	0	0	6643	1299	45	2	374	2	GPATCH4	1	156565376	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2457000	156565376	92685245	12	57369										
NUF2	0	genome.wustl.edu	37	chr1	163298074	163298074	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atggaaggcttcttaccattCagcaatttagttactcatct	6	9	4	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	163298074	163298074	C	T	SNP	NUF2	ENST00000271452	human	ensembl	69_37n	1	known	silent	c.255	p.F85	0.986	pfam_Kinetochore_Nuf2	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228	40	0	0	61	15	19.74	-	-	-	T	163298074	C	T	163298074	2	4	666	1	0	0	0	0	0	0	0	1	10820	825	29	2		2	NUF2	1	163298074	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	6732698	163298074	85952547	13	57370										
DUSP27	0	genome.wustl.edu	37	chr1	167096565	167096565	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggattgccaatgtagtcagtGagacccttgctcagaagcaa	11	9	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	167096565	167096565	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.2197	p.E733K	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	25	0	0	49	14	22.22	-	-	-	A	167096565	G	A	167096565	3	1	666	1	0	0	0	0	1	0	0	0	4859	1291	45	2	2215	2	DUSP27	1	167096565	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	3798491	167096565	82154056	14	57371										
FMO3	0	genome.wustl.edu	37	chr1	171083178	171083178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aagagcctgtatttaacgatGagctcccagcaagcattctg	9	10	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	171083178	171083178	G	A	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	missense	c.859	p.E287K	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	51	0	0	77	20	20.62	-	-	-	A	171083178	G	A	171083178	3	1	666	1	0	0	0	0	1	0	0	0	6002	1291	45	2	881	2	FMO3	1	171083178	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	3986613	171083178	78167443	15	57372										
ZBTB37	0	genome.wustl.edu	37	chr1	173840037	173840037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acagtggtatgtggagacagGagtggcggaccgtgggggtc	20	6	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	173840037	173840037	G	A	SNP	ZBTB37	ENST00000367701	human	ensembl	69_37n	1	known	missense	c.674	p.G225E	0.990	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB37	HGNC	ENSG00000185278	16	0	0	26	6	18.75	-	-	-	A	173840037	G	A	173840037	3	1	666	1	0	0	0	0	1	0	0	0	17634	1174	41	2	676	2	ZBTB37	1	173840037	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2756859	173840037	75410584	16	57373										
TPR	0	genome.wustl.edu	37	chr1	186321198	186321198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgagaaagacgaacttcagaCaatttaagcatttccttttc	6	8	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	186321198	186321198	C	A	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.2379	p.L793F	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	42	0	0	55	7	11.29	-	-	-	A	186321198	C	A	186321198	3	1	666	1	0	0	0	0	1	0	0	0	16512	477	17	4	4844	4	TPR	1	186321198	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	12481161	186321198	62929423	17	57374										
MFSD4	0	genome.wustl.edu	37	chr1	205567990	205567990	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcttcagtgatgatagagatCgtcagaaggttccagaacac	11	8	2	5			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	205567990	205567990	C	T	SNP	MFSD4	ENST00000478555	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MFSD4	HGNC	ENSG00000174514	8	0	0	6	12	66.67	-	-	-	T	205567990	C	T	205567990	1	4	666	0	1	0	0	0	0	0	0	0	9604	899	31	1		1	MFSD4	1	205567990	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	19246792	205567990	43682631	18	57375										
TARBP1	0	genome.wustl.edu	37	chr1	234536980	234536980	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgcaaaaaagaaatgctcctGaatgcgttgccaattcttct	7	9	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	234536980	234536980	G	C	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.4018	p.Q1340E	1.000	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	26	0	0	49	16	24.62	-	-	-	C	234536980	G	C	234536980	3	2	666	1	0	0	0	0	1	0	0	0	15647	1299	45	2	871	2	TARBP1	1	234536980	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	28968990	234536980	14713641	19	57376										
FH	0	genome.wustl.edu	37	chr1	241675380	241675380	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atttacattcatatttgtctGagttcctgatccagtctgcc	6	10	3	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	1	241675380	241675380	G	C	SNP	FH	ENST00000366560	human	ensembl	69_37n	-1	known	missense	c.442	p.Q148E	1.000	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Fum_hydII	pfam_Lyase1_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483	61	0	0	52	8	13.33	-	-	-	C	241675380	G	C	241675380	3	2	666	1	0	0	0	0	1	0	0	0	5921	1299	45	2	1118	2	FH	1	241675380	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	7138400	241675380	7575241	20	57377										
ARHGAP25	0	genome.wustl.edu	37	chr2	69034573	69034573	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	caacctggtgaagcagctgaGagacgcttttgatgctgggg	15	8	0	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	69034573	69034573	G	C	SNP	ARHGAP25	ENST00000409202	human	ensembl	69_37n	1	known	missense	c.635	p.R212T	0.979	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	33	0	0	48	9	15.79	-	-	-	C	69034573	G	C	69034573	3	2	666	1	0	0	0	0	1	0	0	0	876	942	33	2	693	2	ARHGAP25	2	69034573	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		69034573	174164800	21	57378										
RNF181	0	genome.wustl.edu	37	chr2	85824654	85824654	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tggggctgagtgctggccctCtgcgtcttccttattaacct	11	12	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	85824654	85824654	C	T	SNP	RNF181	ENST00000456023	human	ensembl	69_37n	1	putative	silent	c.477	p.L159	0.016	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RNF181	HGNC	ENSG00000168894	54	0	0	53	15	22.06	-	-	-	T	85824654	C	T	85824654	2	4	666	1	0	0	0	0	0	0	0	1	13551	928	32	2		2	RNF181	2	85824654	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	16790081	85824654	157374719	22	57379										
TMEM131	0	genome.wustl.edu	37	chr2	98375464	98375464	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctattaaactcgttccagctCctctgtgaggcctgattgca	8	12	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	98375464	98375464	C	T	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	silent	c.5259	p.R1753	0.995	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	36	0	0	51	17	25	-	-	-	T	98375464	C	T	98375464	2	4	666	1	0	0	0	0	0	0	0	1	16139	854	30	2		2	TMEM131	2	98375464	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	12550810	98375464	144823909	23	57380										
NPHP1	0	genome.wustl.edu	37	chr2	110889333	110889333	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aaaatatcaacaagtgaataGaacacatatttccaattaat	3	6	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	110889333	110889333	G	A	SNP	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	missense	c.1733	p.S578F	0.120	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	30	0	0	21	4	16	-	-	-	A	110889333	G	A	110889333	3	1	666	1	0	0	0	0	1	0	0	0	10651	942	33	2	484	2	NPHP1	2	110889333	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	12513869	110889333	132310040	24	57381										
IWS1	0	genome.wustl.edu	37	chr2	128260970	128260970	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tactgtcacttactcttcttCattgcctgactcactgtcac	4	14	6	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	128260970	128260970	C	A	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	nonsense	c.1402	p.E468*	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	36	0	0	62	16	20.51	-	-	-	A	128260970	C	A	128260970	4	1	666	1	0	0	0	0	0	1	0	0	7985	835	29	2	1101	2	IWS1	2	128260970	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	17371637	128260970	114938403	25	57382										
XIRP2	0	genome.wustl.edu	37	chr2	168105391	168105391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aacaattatctattgactctGcaaactgtctctcacacaca	3	12	4	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	168105391	168105391	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.7489	p.A2497T	0.008	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	20	0	0	16	4	20	-	-	-	A	168105391	G	A	168105391	3	1	666	1	0	0	0	0	1	0	0	0	17527	1319	46	4	7519	4	XIRP2	2	168105391	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	39844421	168105391	75093982	26	57383										
UGT1A9	0	genome.wustl.edu	37	chr2	234581019	234581019	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gttcttttgatgcagtgtttCtcgatccttttgataactgt	8	7	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	2	234581019	234581019	C	T	SNP	UGT1A9	ENST00000354728	human	ensembl	69_37n	1	known	missense	c.439	p.L147F	0.762	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119	46	0	0	42	10	19.23	-	-	-	T	234581019	C	T	234581019	3	4	666	1	0	0	0	0	1	0	0	0	17049	913	32	2	441	2	UGT1A9	2	234581019	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	66475628	234581019	8618354	27	57384										
FANCD2	0	genome.wustl.edu	37	chr3	10089628	10089628	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aggatatgtgttcatccattCtgtcgctggctcagagtttg	11	8	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	10089628	10089628	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	silent	c.1306	p.L436	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	101	0	0	126	15	10.64	-	-	-	T	10089628	C	T	10089628	2	4	666	1	0	0	0	0	0	0	0	1	5711	912	32	2		2	FANCD2	3	10089628	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		10089628	187932802	28	57385										
HIGD1A	0	genome.wustl.edu	37	chr3	42835709	42835709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttttgatccctgatcttcctCatatgaaggaagggaaacac	8	9	2	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	42835709	42835709	C	G	SNP	HIGD1A	ENST00000452906	human	ensembl	69_37n	-1	known	missense	c.79	p.E27Q	1.000	NULL	pfam_Hypoxia_induced_domain	-	no_errors	HIGD1A	HGNC	ENSG00000181061	46	0	0	59	12	16.9	-	-	-	G	42835709	C	G	42835709	3	3	666	1	0	0	0	0	1	0	0	0	7157	835	29	2	256	2	HIGD1A	3	42835709	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	32746081	42835709	155186721	29	57386										
CELSR3	0	genome.wustl.edu	37	chr3	48696551	48696551	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atagttgttgaagaggatctGgaagttgttgagcacagggc	15	4	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	48696551	48696551	G	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.3517	p.Q1173E	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	21	0	0	30	11	26.83	-	-	-	C	48696551	G	C	48696551	3	2	666	1	0	0	0	0	1	0	0	0	3252	1357	47	4	6561	4	CELSR3	3	48696551	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	5860842	48696551	149325879	30	57387										
BAP1	0	genome.wustl.edu	37	chr3	52437465	52437465	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gggactcagcaccccatcctCagccaggtgcagcaggcctg	12	16	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	52437465	52437465	C	T	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.1696	p.E566K	1.000	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	16	0	0	38	9	19.15	-	-	-	T	52437465	C	T	52437465	3	4	666	1	0	0	0	0	1	0	0	0	1315	835	29	2	513	2	BAP1	3	52437465	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	3740914	52437465	145584965	31	57388										
STAB1	0	genome.wustl.edu	37	chr3	52556576	52556576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccctccattctgcagagaaaCgggctggcgttttccacctc	9	15	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	52556576	52556576	C	T	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.6616	p.R2206W	0.759	smart_Link	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	29	0	0	40	8	16.67	-	-	-	T	52556576	C	T	52556576	3	4	666	1	0	0	0	0	1	0	0	0	15328	527	19	1	6858	1	STAB1	3	52556576	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	119111	52556576	145465854	32	57389										
LRIG1	0	genome.wustl.edu	37	chr3	66456365	66456365	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggccgatgactcaatggcttCccagcttccaggagcaggtc	12	13	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	66456365	66456365	C	T	SNP	LRIG1	ENST00000496559	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	LRIG1	HGNC	ENSG00000144749	18	0	0	18	4	18.18	-	-	-	T	66456365	C	T	66456365	1	4	666	0	1	0	0	0	0	0	0	0	9010	870	30	2		2	LRIG1	3	66456365	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	13899789	66456365	131566065	33	57390										
C3orf15	0	genome.wustl.edu	37	chr3	119462918	119462918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agctggtgagactgcaggagGagaggaggatccatgccttt	16	7	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	119462918	119462918	G	A	SNP	C3orf15	ENST00000273390	human	ensembl	69_37n	1	known	missense	c.1777	p.E593K	1.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	C3orf15	HGNC	ENSG00000183833	30	0	0	48	10	17.24	-	-	-	A	119462918	G	A	119462918	3	1	666	1	0	0	0	0	1	0	0	0	2229	1175	41	2	1831	2	C3orf15	3	119462918	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	53006553	119462918	78559512	34	57391										
NEK11	0	genome.wustl.edu	37	chr3	130947413	130947413	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tggctgaagagtactacgctGatgcatttgattcctattgt	10	7	0	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	130947413	130947413	G	A	SNP	NEK11	ENST00000383366	human	ensembl	69_37n	1	known	missense	c.1441	p.D481N	0.389	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670	46	0	0	28	9	24.32	-	-	-	A	130947413	G	A	130947413	3	1	666	1	0	0	0	0	1	0	0	0	10395	1290	45	2	1509	2	NEK11	3	130947413	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	11484495	130947413	67075017	35	57392										
PRR23B	0	genome.wustl.edu	37	chr3	138738918	138738918	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gggggccagagcacagggttCtgggatggggccctcccggt	19	11	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	138738918	138738918	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	missense	c.586	p.E196K	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	36	0	0	30	8	21.05	-	-	-	T	138738918	C	T	138738918	3	4	666	1	0	0	0	0	1	0	0	0	12676	922	32	2	215	2	PRR23B	3	138738918	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	7791505	138738918	59283512	36	57393										
COPB2	0	genome.wustl.edu	37	chr3	139092649	139092649	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaatgccaaatacgtactgtTcctaaaaagaacaatgtaaa	6	7	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	139092649	139092649	T	C	SNP	COPB2	ENST00000333188	human	ensembl	69_37n	-1	known	silent	c.753	p.G251	0.938	pirsf_Coatomer_b'su,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Coatomer_b'su,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	22	0	0	25	6	19.35	-	-	-	C	139092649	T	C	139092649	2	2	666	1	0	0	0	0	0	0	0	1	3759	1797	62	5		5	COPB2	3	139092649	Silent	SNP	T	TCGA-C8-A3M7-01A-12D-A21Q-09	353731	139092649	58929781	37	57394										
TNIK	0	genome.wustl.edu	37	chr3	170819401	170819401	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aatccggagttctcttagttCtttggctaatgccgtcagat	9	9	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	170819401	170819401	C	G	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.2428	p.E810Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	80	0	0	64	24	27.27	-	-	-	G	170819401	C	G	170819401	3	3	666	1	0	0	0	0	1	0	0	0	16408	922	32	2	1702	2	TNIK	3	170819401	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	31726752	170819401	27203029	38	57395										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	18	0	0	24	9	27.27	-	-	-	G	178952085	A	G	178952085	3	3	666	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	8132684	178952085	19070345	39	57396										
CPN2	0	genome.wustl.edu	37	chr3	194062061	194062061	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gccttgctttcgtccggccaCgtgacctggaagcccaagtg	12	14	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	3	194062061	194062061	C	T	SNP	CPN2	ENST00000323830	human	ensembl	69_37n	-1	known	silent	c.1371	p.T457	0.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772	27	0	0	51	11	17.74	-	-	-	T	194062061	C	T	194062061	2	4	666	1	0	0	0	0	0	0	0	1	3840	523	19	1		1	CPN2	3	194062061	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	15109976	194062061	3960369	40	57397										
ZNF595	0	genome.wustl.edu	37	chr4	87197	87197	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaagaatgtggcaaagccttCaattggtcctcatcccttac	8	11	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	87197	87197	C	T	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.859	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	50	0	0	40	17	29.82	-	-	-	T	87197	C	T	87197	1	4	666	0	1	0	0	0	0	0	0	0	18121	838	29	2		2	ZNF595	4	87197	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		87197	191067079	41	57398										
ZNF518B	0	genome.wustl.edu	37	chr4	10445844	10445844	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atttcttgaataccttcagaGgtagcttttgaagttccctt	7	8	2	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	10445844	10445844	G	T	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	silent	c.2109	p.T703	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	23	0	0	26	4	13.33	-	-	-	T	10445844	G	T	10445844	2	4	666	1	0	0	0	0	0	0	0	1	18059	987	35	4		4	ZNF518B	4	10445844	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	10358647	10445844	180708432	42	57399										
ANXA3	0	genome.wustl.edu	37	chr4	79516556	79516556	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcagaagagatgaaagtctgAaagtggatgagcatctggcc	14	6	2	5			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	79516556	79516556	A	G	SNP	ANXA3	ENST00000264908	human	ensembl	69_37n	1	known	missense	c.505	p.K169E	0.998	superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIII	-	no_errors	ANXA3	HGNC	ENSG00000138772	84	0	0	101	21	17.21	-	-	-	G	79516556	A	G	79516556	3	3	666	1	0	0	0	0	1	0	0	0	718	247	9	5	531	5	ANXA3	4	79516556	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	69070712	79516556	111637720	43	57400										
NDST3	0	genome.wustl.edu	37	chr4	119036068	119036068	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agccccacctcttccacaatGagtcatctttggtggagcag	9	13	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	119036068	119036068	G	A	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	missense	c.1177	p.E393K	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	121	0	0	146	36	19.78	-	-	-	A	119036068	G	A	119036068	3	1	666	1	0	0	0	0	1	0	0	0	10329	1291	45	2	1187	2	NDST3	4	119036068	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	39519512	119036068	72118208	44	57401										
PCDH10	0	genome.wustl.edu	37	chr4	134072895	134072895	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccctgcgctccttcgactatGagcagctgaaggacttcagt	10	13	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	134072895	134072895	G	C	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.1600	p.E534Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	18	0	0	39	14	26.42	-	-	-	C	134072895	G	C	134072895	3	2	666	1	0	0	0	0	1	0	0	0	11580	1291	45	2	1602	2	PCDH10	4	134072895	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	15036827	134072895	57081381	45	57402										
RNF150	0	genome.wustl.edu	37	chr4	142053860	142053860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggtgtaccattcctccttctCggccacggtaaagtccaggc	10	14	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	142053860	142053860	C	T	SNP	RNF150	ENST00000515673	human	ensembl	69_37n	-1	known	missense	c.103	p.E35K	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153	15	0	0	16	4	20	-	-	-	T	142053860	C	T	142053860	3	4	666	1	0	0	0	0	1	0	0	0	13537	893	31	1	1241	1	RNF150	4	142053860	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	7980965	142053860	49100416	46	57403										
ARHGAP10	0	genome.wustl.edu	37	chr4	148787878	148787878	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cttagatgctgtcattttttCaggggatgtttaccttctat	8	7	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	148787878	148787878	C	T	SNP	ARHGAP10	ENST00000336498	human	ensembl	69_37n	1	known	nonsense	c.613	p.Q205*	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP10	HGNC	ENSG00000071205	76	0	0	97	25	20.49	-	-	-	T	148787878	C	T	148787878	4	4	666	1	0	0	0	0	0	1	0	0	864	827	29	2	639	2	ARHGAP10	4	148787878	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	6734018	148787878	42366398	47	57404										
FGG	0	genome.wustl.edu	37	chr4	155531295	155531295	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcttcaagctgggctaccttCtctttcaggttaacaatctt	7	11	4	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	4	155531295	155531295	C	T	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	silent	c.456	p.E152	0.996	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	56	0	0	71	13	15.48	-	-	-	T	155531295	C	T	155531295	2	4	666	1	0	0	0	0	0	0	0	1	5916	912	32	2		2	FGG	4	155531295	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	6743417	155531295	35622981	48	57405										
STK32A	0	genome.wustl.edu	37	chr5	146754671	146754671	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agaaaggcaggctgaattgtGatcctacctttgaacttgag	11	7	0	5			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	5	146754671	146754671	G	C	SNP	STK32A	ENST00000397936	human	ensembl	69_37n	1	known	missense	c.922	p.D308H	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32A	HGNC	ENSG00000169302	34	0	0	53	10	15.87	-	-	-	C	146754671	G	C	146754671	3	2	666	1	0	0	0	0	1	0	0	0	15388	1290	45	2	993	2	STK32A	5	146754671	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		146754671	34160589	49	57406										
BTN3A3	0	genome.wustl.edu	37	chr6	26452095	26452095	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggaggtggaagtgggggacaGaaaagagtggcatattgggg	21	2	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	26452095	26452095	G	T	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	missense	c.1211	p.R404I	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	63	0	0	71	13	15.48	-	-	-	T	26452095	G	T	26452095	3	4	666	1	0	0	0	0	1	0	0	0	1573	942	33	2	1245	2	BTN3A3	6	26452095	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		26452095	144662972	50	57407										
MSH5	0	genome.wustl.edu	37	chr6	31721124	31721124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acctgggggagctcagttctCgtctggacgtcattcagttt	12	10	5	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	31721124	31721124	C	T	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.910	p.R304C	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	23	0	0	19	5	20.83	-	-	-	T	31721124	C	T	31721124	3	4	666	1	0	0	0	0	1	0	0	0	9945	884	31	1	948	1	MSH5	6	31721124	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	5269029	31721124	139393943	51	57408										
NEU1	0	genome.wustl.edu	37	chr6	31827913	31827913	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gggtccacgagctcagggtcGaaggtcacatcacggggcct	15	12	3	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	31827913	31827913	G	A	SNP	NEU1	ENST00000375631	human	ensembl	69_37n	-1	known	silent	c.927	p.F309	0.036	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU1	HGNC	ENSG00000204386	18	0	0	33	8	19.51	-	-	-	A	31827913	G	A	31827913	2	1	666	1	0	0	0	0	0	0	0	1	10413	1049	37	1		1	NEU1	6	31827913	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	106789	31827913	139287154	52	57409										
TNXB	0	genome.wustl.edu	37	chr6	32065108	32065108	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggtggggaagagggagggatCtcagcatctgtggggtctga	20	5	3	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	32065108	32065108	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.522	p.E174	0.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	37	0	0	35	8	18.6	-	-	-	T	32065108	C	T	32065108	2	4	666	1	0	0	0	0	0	0	0	1	16441	912	32	2		2	TNXB	6	32065108	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	237195	32065108	139049959	53	57410										
KIFC1	0	genome.wustl.edu	37	chr6	33374170	33374170	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cttgaccccggcttagccctCggccccggggagcgggaacg	15	16	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	33374170	33374170	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	silent	c.1734	p.L578	0.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	40	0	0	38	9	19.15	-	-	-	T	33374170	C	T	33374170	2	4	666	1	0	0	0	0	0	0	0	1	8364	871	31	1		1	KIFC1	6	33374170	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1309062	33374170	137740897	54	57411										
KLC4	0	genome.wustl.edu	37	chr6	43028032	43028033	+	Frame_Shift_Del	DEL	TC	TC	-													0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gctgtaggtctctggttaagTctctctctctcattcccttc							TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	43028032	43028033	TC	-	DEL	KLC4	ENST00000481499	human	ensembl	69_37n	1	known	frame_shift_del	c.85_86	p.L32fs	0.000:0.000	NULL	NULL	-	no_errors	KLC4	HGNC	ENSG00000137171	54	0	0	67	15	18.29	-	-	-	-	43028033	TC	-	43028032	7	5	666	1	0	1	0	1	0	0	0	0	8389	1682	58	0		0	KLC4	6	43028032	Frame_Shift_Del	DEL	TC	TCGA-C8-A3M7-01A-12D-A21Q-09	9653862	43028032	128087035	55	57412										
ZNF292	0	genome.wustl.edu	37	chr6	87964456	87964456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aaatactgaagtgaaaatatCtatttgcaagaccatttcat	5	6	2	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	87964456	87964456	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.1109	p.S370F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	22	0	0	34	8	19.05	-	-	-	T	87964456	C	T	87964456	3	4	666	1	0	0	0	0	1	0	0	0	17922	913	32	2	1139	2	ZNF292	6	87964456	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	44936424	87964456	83150611	56	57413										
FBXO5	0	genome.wustl.edu	37	chr6	153292185	153292185	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gggggaaaaaaacctcaggaTactacaccgatttcaacata	8	9	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	6	153292185	153292185	T	C	SNP	FBXO5	ENST00000477822	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXO5	HGNC	ENSG00000112029	14	0	0	9	6	40	-	-	-	C	153292185	T	C	153292185	1	2	666	0	1	0	0	0	0	0	0	0	5804	1421	49	5		5	FBXO5	6	153292185	RNA	SNP	T	TCGA-C8-A3M7-01A-12D-A21Q-09	65327729	153292185	17822882	57	57414										
PKD1L1	0	genome.wustl.edu	37	chr7	47969108	47969108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggggtgcgaggaatgccaggCggaaggccgtgggagctgtg	22	7	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	47969108	47969108	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	silent	c.753	p.P251	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	9	0	0	11	6	35.29	-	-	-	T	47969108	C	T	47969108	2	4	666	1	0	0	0	0	0	0	0	1	12038	755	27	1		1	PKD1L1	7	47969108	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		47969108	111169555	58	57415										
ZNF479	0	genome.wustl.edu	37	chr7	57188761	57188761	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttttttaaattgtaatttctCatgtccacattttccatatg	3	7	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	57188761	57188761	C	T	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.361	p.E121K	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	60	0	0	79	11	12.22	-	-	-	T	57188761	C	T	57188761	3	4	666	1	0	0	0	0	1	0	0	0	18029	835	29	2	1217	2	ZNF479	7	57188761	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	9219653	57188761	101949902	59	57416										
ZNF716	0	genome.wustl.edu	37	chr7	57529366	57529366	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aaccttcacttaccacaagaGaactcatactggagagaaac	6	11	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	57529366	57529366	G	A	SNP	ZNF716	ENST00000420713	human	ensembl	69_37n	1	known	missense	c.1199	p.R400K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111	14	0	0	23	5	17.86	-	-	-	A	57529366	G	A	57529366	3	1	666	1	0	0	0	0	1	0	0	0	18215	942	33	2	1213	2	ZNF716	7	57529366	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	340605	57529366	101609297	60	57417										
STAG3	0	genome.wustl.edu	37	chr7	99802301	99802301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cccagggcctgaatgagcttCctgccttcatcgagatgagg	12	12	1	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	99802301	99802301	C	A	SNP	STAG3	ENST00000317296	human	ensembl	69_37n	1	known	missense	c.2854	p.P952T	0.998	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923	21	0	0	45	17	27.42	-	-	-	A	99802301	C	A	99802301	3	1	666	1	0	0	0	0	1	0	0	0	15335	855	30	2	2956	2	STAG3	7	99802301	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	42272935	99802301	59336362	61	57418										
LAMB4	0	genome.wustl.edu	37	chr7	107706818	107706818	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	catatgaattccatacctttCacagtttctgccagttgtaa	5	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	107706818	107706818	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.2674	p.E892K	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	20	0	0	28	5	15.15	-	-	-	T	107706818	C	T	107706818	3	4	666	1	0	0	0	0	1	0	0	0	8667	835	29	2	2671	2	LAMB4	7	107706818	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	7904517	107706818	51431845	62	57419										
ZNF800	0	genome.wustl.edu	37	chr7	127014569	127014569	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cattcttactgcgtcctttaGaggattggtttggattcttt	9	7	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	127014569	127014569	G	A	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	missense	c.821	p.S274F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	38	0	0	71	10	12.35	-	-	-	A	127014569	G	A	127014569	3	1	666	1	0	0	0	0	1	0	0	0	18262	942	33	2	1181	2	ZNF800	7	127014569	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	19307751	127014569	32124094	63	57420										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138738312	138738312	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aggagttttccttcttccttCatctgcgatttcttcctaat	5	11	4	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	138738312	138738312	C	T	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.2334	p.M778I	0.991	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	40	0	0	44	9	16.98	-	-	-	T	138738312	C	T	138738312	3	4	666	1	0	0	0	0	1	0	0	0	17671	826	29	2	382	2	ZC3HAV1	7	138738312	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	11723743	138738312	20400351	64	57421										
UBN2	0	genome.wustl.edu	37	chr7	138946214	138946214	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gacgtcccggacttaaatctGagcagcggtgatccagacct	11	12	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	138946214	138946214	G	C	SNP	UBN2	ENST00000483726	human	ensembl	69_37n	1	putative	nonstop	c.428	p.*143S	0.757	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN2	HGNC	ENSG00000157741	24	0	0	33	4	10.81	-	-	-	C	138946214	G	C	138946214	4	2	666	1	0	0	0	0	0	0	0	0	16990	1277	45	2	1144	2	UBN2	7	138946214	Nonstop_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	207902	138946214	20192449	65	57422										
ZNF467	0	genome.wustl.edu	37	chr7	149461947	149461947	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttgcggctgaagctctttccGcactgcgggcaggagaaggg	16	10	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	149461947	149461947	G	A	SNP	ZNF467	ENST00000302017	human	ensembl	69_37n	-1	known	silent	c.1644	p.C548	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	50	0	0	63	47	42.73	-	-	-	A	149461947	G	A	149461947	2	1	666	1	0	0	0	0	0	0	0	1	18023	1079	38	1		1	ZNF467	7	149461947	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	10515733	149461947	9676716	66	57423										
MLL3	0	genome.wustl.edu	37	chr7	151868351	151868351	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cattacaggcagtgttacctGaggaatggcctgtggtccaa	12	9	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	7	151868351	151868351	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.9451	p.Q3151*	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	28	0	0	71	17	19.32	-	-	-	A	151868351	G	A	151868351	4	1	666	1	0	0	0	0	0	1	0	0	9693	1299	45	2	5364	2	MLL3	7	151868351	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2406404	151868351	7270312	67	57424										
SLCO5A1	0	genome.wustl.edu	37	chr8	70667681	70667681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgacatcctttccaaatccCatcgaagaaacttttttgtc	4	12	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	8	70667681	70667681	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.1236	p.M412I	0.984	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	34	0	0	38	25	39.68	-	-	-	T	70667681	C	T	70667681	3	4	666	1	0	0	0	0	1	0	0	0	14820	594	21	4	1338	4	SLCO5A1	8	70667681	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		70667681	75696341	68	57425										
CDH17	0	genome.wustl.edu	37	chr8	95172318	95172318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	actcccagtaaatggctcatCagcatcagtggcctggatgg	11	11	3	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	8	95172318	95172318	C	T	SNP	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	missense	c.1432	p.D478N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	44	0	0	83	20	19.42	-	-	-	T	95172318	C	T	95172318	3	4	666	1	0	0	0	0	1	0	0	0	3131	826	29	2	1094	2	CDH17	8	95172318	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	24504637	95172318	51191704	69	57426										
TMEM74	0	genome.wustl.edu	37	chr8	109796528	109796528	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gttttgcagactctttggaaGaggcaaatctgtttcgacga	11	7	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	8	109796528	109796528	G	A	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.800	p.S267F	1.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	48	0	0	43	12	21.82	-	-	-	A	109796528	G	A	109796528	3	1	666	1	0	0	0	0	1	0	0	0	16297	942	33	2	121	2	TMEM74	8	109796528	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	14624210	109796528	36567494	70	57427										
TAF1L	0	genome.wustl.edu	37	chr9	32631814	32631814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcttctccttttcctggttcCgcttaagccgcctcagttgc	8	15	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	32631814	32631814	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3764	p.R1255Q	0.997	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	47	0	0	54	13	19.4	-	-	-	T	32631814	C	T	32631814	3	4	666	1	0	0	0	0	1	0	0	0	15615	652	23	1	1720	1	TAF1L	9	32631814	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		32631814	108581617	71	57428										
PTPDC1	0	genome.wustl.edu	37	chr9	96860128	96860128	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcaacagtttgaccctctttGgaaaaggcggaatgttgagt	12	7	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	96860128	96860128	G	A	SNP	PTPDC1	ENST00000375360	human	ensembl	69_37n	1	known	nonsense	c.1118	p.W373*	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	34	0	0	49	11	18.33	-	-	-	A	96860128	G	A	96860128	4	1	666	1	0	0	0	0	0	1	0	0	12854	1357	47	4	1382	4	PTPDC1	9	96860128	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	64228314	96860128	44353303	72	57429										
MRPL50	0	genome.wustl.edu	37	chr9	104153128	104153128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aacaaccactggctctttctCttttctggaatgatcaaaaa	5	10	4	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	104153128	104153128	C	G	SNP	MRPL50	ENST00000374865	human	ensembl	69_37n	-1	known	missense	c.97	p.E33Q	0.421	NULL	pfam_Ribosomal_L50_mt	-	no_errors	MRPL50	HGNC	ENSG00000136897	21	0	0	16	7	30.43	-	-	-	G	104153128	C	G	104153128	3	3	666	1	0	0	0	0	1	0	0	0	9886	922	32	2	383	2	MRPL50	9	104153128	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	7293000	104153128	37060303	73	57430										
ORM2	0	genome.wustl.edu	37	chr9	117092582	117092582	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tcctcagggtgagctcctgcAtgcgcactgcccaccagggg	13	15	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	117092582	117092582	A	C	SNP	ORM2	ENST00000412657	human	ensembl	69_37n	1	known	missense	c.398	p.H133P	0.000	NULL	NULL	-	no_errors	ORM2	HGNC	ENSG00000228278	9	0	0	6	5	45.45	-	-	-	C	117092582	A	C	117092582	3	2	666	1	0	0	0	0	1	0	0	0	11341	232	8	5		5	ORM2	9	117092582	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	12939454	117092582	24120849	74	57431										
WDR38	0	genome.wustl.edu	37	chr9	127619046	127619046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gacaagaccatccacatctgGaagcccacaaccagcagcct	7	16	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	127619046	127619046	G	T	SNP	WDR38	ENST00000373574	human	ensembl	69_37n	1	known	missense	c.654	p.W218C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR38	HGNC	ENSG00000136918	37	0	0	53	15	22.06	-	-	-	T	127619046	G	T	127619046	3	4	666	1	0	0	0	0	1	0	0	0	17389	1183	41	2	680	2	WDR38	9	127619046	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	10526464	127619046	13594385	75	57432										
GOLGA1	0	genome.wustl.edu	37	chr9	127684133	127684133	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctggttcgtgcctccaattcTtgttccattttccctagact	6	13	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	127684133	127684133	T	A	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	missense	c.600	p.Q200H	0.998	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	42	0	0	49	19	27.94	-	-	-	A	127684133	T	A	127684133	3	1	666	1	0	0	0	0	1	0	0	0	6603	1606	56	5	1763	5	GOLGA1	9	127684133	Missense_Mutation	SNP	T	TCGA-C8-A3M7-01A-12D-A21Q-09	65087	127684133	13529298	76	57433										
UCK1	0	genome.wustl.edu	37	chr9	134404460	134404460	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggcaggcgtgcttcagacctCaggacctgccgccagcctcg	13	16	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	9	134404460	134404460	C	T	SNP	UCK1	ENST00000459858	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UCK1	HGNC	ENSG00000130717	47	0	0	64	16	20	-	-	-	T	134404460	C	T	134404460	1	4	666	0	1	0	0	0	0	0	0	0	17020	841	29	2		2	UCK1	9	134404460	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	6720327	134404460	6808971	77	57434										
ASB13	0	genome.wustl.edu	37	chr10	5683789	5683789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgctccacgtgtagtcagacGgcttcttcccgcggttgtcc	11	14	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	5683789	5683789	G	T	SNP	ASB13	ENST00000357700	human	ensembl	69_37n	-1	known	missense	c.653	p.P218Q	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB13	HGNC	ENSG00000196372	27	0	0	39	11	22	-	-	-	T	5683789	G	T	5683789	3	4	666	1	0	0	0	0	1	0	0	0	1021	1116	39	3	191	3	ASB13	10	5683789	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		5683789	129850958	78	57435										
ITIH5	0	genome.wustl.edu	37	chr10	7621822	7621822	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgaagtccacgtcgttgccGatgccaatggtgaagatgca	12	10	0	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	7621822	7621822	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	69_37n	-1	known	silent	c.1314	p.I438	0.350	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	59	0	0	103	23	18.25	-	-	-	A	7621822	G	A	7621822	2	1	666	1	0	0	0	0	0	0	0	1	7961	1048	37	1		1	ITIH5	10	7621822	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	1938033	7621822	127912925	79	57436										
RBP3	0	genome.wustl.edu	37	chr10	48385957	48385957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tccccaaacatgtcaaacctCaagtagccaatgttgtcctc	5	14	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	48385957	48385957	C	G	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.3135	p.L1045F	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	22	0	0	32	6	15.79	-	-	-	G	48385957	C	G	48385957	3	3	666	1	0	0	0	0	1	0	0	0	13240	825	29	2	620	2	RBP3	10	48385957	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	40764135	48385957	87148790	80	57437										
TACR2	0	genome.wustl.edu	37	chr10	71164782	71164782	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agtcagctcgagcttatcttCcttggtgggtgtgacccatg	12	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	71164782	71164782	C	G	SNP	TACR2	ENST00000373306	human	ensembl	69_37n	-1	known	missense	c.997	p.E333Q	0.954	prints_NK2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073	27	0	0	71	11	13.41	-	-	-	G	71164782	C	G	71164782	3	3	666	1	0	0	0	0	1	0	0	0	15598	864	30	2	203	2	TACR2	10	71164782	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	22778825	71164782	64369965	81	57438										
UNC5B	0	genome.wustl.edu	37	chr10	73046505	73046505	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	caggacaccaacttcctgctCaccatcgaccacaacctcat	4	18	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	73046505	73046505	C	T	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	silent	c.612	p.L204	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	46	0	0	70	17	19.54	-	-	-	T	73046505	C	T	73046505	2	4	666	1	0	0	0	0	0	0	0	1	17089	813	29	2		2	UNC5B	10	73046505	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1881723	73046505	62488242	82	57439										
EIF3A	0	genome.wustl.edu	37	chr10	120801560	120801560	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgagtcatcaccccgtctggGaaaccgatcatcatcagcac	8	14	6	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	10	120801560	120801560	G	C	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.3472	p.P1158A	0.969	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	30	0	0	50	17	25.37	-	-	-	C	120801560	G	C	120801560	3	2	666	1	0	0	0	0	1	0	0	0	5047	1174	41	2	692	2	EIF3A	10	120801560	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	47755055	120801560	14733187	83	57440										
PGAP2	0	genome.wustl.edu	37	chr11	3846131	3846131	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccctgcctgtgctcccttccAtgaccgctagtgggagccaa	10	16	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	3846131	3846131	A	G	SNP	PGAP2	ENST00000532017	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGAP2	HGNC	ENSG00000148985	16	0	0	25	6	19.35	-	-	-	G	3846131	A	G	3846131	1	3	666	0	1	0	0	0	0	0	0	0	11852	232	8	5		5	PGAP2	11	3846131	RNA	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09		3846131	131160385	84	57441										
OR52E6	0	genome.wustl.edu	37	chr11	5862420	5862420	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccacaggtgttgagagctttGagtcgagcttcccaggaggg	15	9	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	5862420	5862420	G	C	SNP	OR52E6	ENST00000379946	human	ensembl	69_37n	-1	known	silent	c.720	p.L240	0.020	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409	28	0	0	29	5	14.71	-	-	-	C	5862420	G	C	5862420	2	2	666	1	0	0	0	0	0	0	0	1	11190	1277	45	2		2	OR52E6	11	5862420	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2016289	5862420	129144096	85	57442										
AHNAK	0	genome.wustl.edu	37	chr11	62295895	62295895	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cctttgactttggggcctttCaggtgtaagtccacatcagg	11	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	62295895	62295895	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.5994	p.L1998	0.557	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	100	0	0	133	31	18.9	-	-	-	T	62295895	C	T	62295895	2	4	666	1	0	0	0	0	0	0	0	1	414	813	29	2		2	AHNAK	11	62295895	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	56433475	62295895	72710621	86	57443										
TIGD3	0	genome.wustl.edu	37	chr11	65123363	65123363	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaactcctggatgagtccaaGatgtcccagtcggaggtggc	14	10	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	65123363	65123363	G	T	SNP	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	missense	c.84	p.K28N	1.000	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	29	0	0	37	24	39.34	-	-	-	T	65123363	G	T	65123363	3	4	666	1	0	0	0	0	1	0	0	0	15992	933	33	2	86	2	TIGD3	11	65123363	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2827468	65123363	69883153	87	57444			1	99		3	3	1301	G		2.387682e-05
TIGD3	0	genome.wustl.edu	37	chr11	65124541	65124541	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgaagacgagaagggggacaGagagggtgcctttgagcccc	17	8	0	5			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	65124541	65124541	G	A	SNP	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	missense	c.1262	p.R421K	0.005	NULL	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	21	0	0	15	8	34.78	-	-	-	A	65124541	G	A	65124541	3	1	666	1	0	0	0	0	1	0	0	0	15992	942	33	2	1264	2	TIGD3	11	65124541	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	1178	65124541	69881975	88	57445			1	99		3	3	1301	G		2.387682e-05
TIGD3	0	genome.wustl.edu	37	chr11	65124663	65124663	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tcgaaaaattctacgactgtGaggaggaggtggagcggctt	15	6	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	65124663	65124663	G	C	SNP	TIGD3	ENST00000309880	human	ensembl	69_37n	1	known	missense	c.1384	p.E462Q	0.999	NULL	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825	18	0	0	30	8	21.05	-	-	-	C	65124663	G	C	65124663	3	2	666	1	0	0	0	0	1	0	0	0	15992	1291	45	2	1386	2	TIGD3	11	65124663	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	122	65124663	69881853	89	57446			1	99		3	3	1301	G		2.387682e-05
PCF11	0	genome.wustl.edu	37	chr11	82877653	82877653	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaccacaagaaactacaaatCagcattctacaaagtcaggc	6	11	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	82877653	82877653	C	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	nonsense	c.1714	p.Q572*	0.997	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	25	0	0	18	10	35.71	-	-	-	T	82877653	C	T	82877653	4	4	666	1	0	0	0	0	0	1	0	0	11646	827	29	2	1732	2	PCF11	11	82877653	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	17752990	82877653	52128863	90	57447										
DLG2	0	genome.wustl.edu	37	chr11	83984229	83984229	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttgcatagcttgttcacattGttttaaggaagcaatagtat	8	5	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	83984229	83984229	G	A	SNP	DLG2	ENST00000418306	human	ensembl	69_37n	-1	known	nonsense	c.70	p.Q24*	1.000	superfamily_PDZ,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	36	0	0	44	7	13.73	-	-	-	A	83984229	G	A	83984229	4	1	666	1	0	0	0	0	0	1	0	0	4591	1386	48	4	2581	4	DLG2	11	83984229	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	1106576	83984229	51022287	91	57448										
AASDHPPT	0	genome.wustl.edu	37	chr11	105948531	105948531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cttggctgccgagccgagccGaatggctgctggcagtgcga	16	12	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	105948531	105948531	G	A	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	1	known	missense	c.94	p.E32K	1.000	superfamily_4-PPantetheinyl_Trfase	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	72	0	0	111	37	25	-	-	-	A	105948531	G	A	105948531	3	1	666	1	0	0	0	0	1	0	0	0	23	1059	37	1	96	1	AASDHPPT	11	105948531	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	21964302	105948531	29057985	92	57449										
SIDT2	0	genome.wustl.edu	37	chr11	117063053	117063053	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgctcctcagcacgcagctCtattacatgggccggtggaa	11	13	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	117063053	117063053	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	silent	c.2019	p.L673	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	32	0	0	44	14	24.14	-	-	-	T	117063053	C	T	117063053	2	4	666	1	0	0	0	0	0	0	0	1	14392	900	32	2		2	SIDT2	11	117063053	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	11114522	117063053	17943463	93	57450										
HMBS	0	genome.wustl.edu	37	chr11	118958972	118958972	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	actttttctgcaggaagaaaAcagcccaaagatgagagtga	10	7	1	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	11	118958972	118958972	A	G	SNP	HMBS	ENST00000278715	human	ensembl	69_37n	1	known	missense	c.41	p.N14S	0.906	NULL	pfam_Porphobilin_deaminase_N,pfam_Porphobilinogen_deaminase_C,superfamily_Porphobilinogen_deaminase_C,pirsf_4pyrrol_synth_OHMeBilane_synth,prints_4pyrrol_synth_OHMeBilane_synth,tigrfam_4pyrrol_synth_OHMeBilane_synth	-	no_errors	HMBS	HGNC	ENSG00000256269	37	0	0	52	19	26.76	-	-	-	G	118958972	A	G	118958972	3	3	666	1	0	0	0	0	1	0	0	0	7270	43	2	5	47	5	HMBS	11	118958972	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	1895919	118958972	16047544	94	57451										
GPR162	0	genome.wustl.edu	37	chr12	6935488	6935488	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cctggaaggcacatgctcttCcctcctcttgagagagtcca	9	14	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	6935488	6935488	C	A	SNP	GPR162	ENST00000311268	human	ensembl	69_37n	1	known	missense	c.1185	p.F395L	0.983	prints_GPCR_162	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_162,prints_GPCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510	39	0	0	58	8	12.12	-	-	-	A	6935488	C	A	6935488	3	1	666	1	0	0	0	0	1	0	0	0	6716	854	30	2	1214	2	GPR162	12	6935488	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		6935488	126916407	95	57452										
TSPAN11	0	genome.wustl.edu	37	chr12	31135536	31135536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acatcctgttgcgggaggccGagggccgccaggtgcccgac	16	14	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	31135536	31135536	G	A	SNP	TSPAN11	ENST00000261177	human	ensembl	69_37n	1	known	missense	c.526	p.E176K	0.980	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900	38	0	0	73	19	20.65	-	-	-	A	31135536	G	A	31135536	3	1	666	1	0	0	0	0	1	0	0	0	16731	1059	37	1	544	1	TSPAN11	12	31135536	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	24200048	31135536	102716359	96	57453										
LRRK2	0	genome.wustl.edu	37	chr12	40742252	40742252	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtgccccatggcctatggttGagaaattaattaaacagtgt	10	7	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	40742252	40742252	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.6322	p.E2108K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	65	0	0	58	22	27.5	-	-	-	A	40742252	G	A	40742252	3	1	666	1	0	0	0	0	1	0	0	0	9099	1291	45	2	6492	2	LRRK2	12	40742252	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	9606716	40742252	93109643	97	57454										
HDAC7	0	genome.wustl.edu	37	chr12	48183079	48183079	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gatcttgctggccttgctctGctgttgcagctgccggcagg	14	12	2	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	48183079	48183079	G	T	SNP	HDAC7	ENST00000380610	human	ensembl	69_37n	-1	known	missense	c.2251	p.Q751K	0.990	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273	35	0	0	24	4	14.29	-	-	-	T	48183079	G	T	48183079	3	4	666	1	0	0	0	0	1	0	0	0	7063	1328	46	4	807	4	HDAC7	12	48183079	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	7440827	48183079	85668816	98	57455										
NCKAP5L	0	genome.wustl.edu	37	chr12	50190646	50190646	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	taggtaagactctgtgtcctCaaggagctggcccaggttca	12	10	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	50190646	50190646	C	T	SNP	NCKAP5L	ENST00000335999	human	ensembl	69_37n	-1	known	missense	c.997	p.E333K	0.991	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566	28	0	0	35	7	16.67	-	-	-	T	50190646	C	T	50190646	3	4	666	1	0	0	0	0	1	0	0	0	10296	835	29	2	3031	2	NCKAP5L	12	50190646	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	2007567	50190646	83661249	99	57456										
PAN2	0	genome.wustl.edu	37	chr12	56713158	56713158	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aacttgactccaatgtcaatGagaaaacgaagctttaagta	7	7	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	56713158	56713158	G	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	silent	c.3216	p.L1072	0.999	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	47	0	0	70	12	14.63	-	-	-	A	56713158	G	A	56713158	2	1	666	1	0	0	0	0	0	0	0	1	11487	1277	45	2		2	PAN2	12	56713158	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	6522512	56713158	77138737	100	57457										
RDH16	0	genome.wustl.edu	37	chr12	57345768	57345768	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cccaaggatacaccacccctCatagcacaccccaaatccat	3	19	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	57345768	57345768	C	T	SNP	RDH16	ENST00000360752	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RDH16	HGNC	ENSG00000139547	23	0	0	43	17	28.33	-	-	-	T	57345768	C	T	57345768	1	4	666	0	1	0	0	0	0	0	0	0	13277	841	29	2		2	RDH16	12	57345768	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	632610	57345768	76506127	101	57458										
RIMBP2	0	genome.wustl.edu	37	chr12	130926638	130926638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agagctgggcggagatctgcGtgatgttgtccacccgcagg	16	10	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	12	130926638	130926638	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.1208	p.T403M	0.998	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	68	0	0	73	14	16.09	-	-	-	A	130926638	G	A	130926638	3	1	666	1	0	0	0	0	1	0	0	0	13447	1145	40	1	1998	1	RIMBP2	12	130926638	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	73580870	130926638	2925257	102	57459										
POSTN	0	genome.wustl.edu	37	chr13	38164577	38164577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggatccctttccctcgatctCctccctcagttttgaggcgt	8	15	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	13	38164577	38164577	C	T	SNP	POSTN	ENST00000379747	human	ensembl	69_37n	-1	known	missense	c.373	p.E125K	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	26	0	0	34	12	26.09	-	-	-	T	38164577	C	T	38164577	3	4	666	1	0	0	0	0	1	0	0	0	12333	864	30	2	2217	2	POSTN	13	38164577	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		38164577	77005301	103	57460										
FREM2	0	genome.wustl.edu	37	chr13	39264059	39264059	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acgtgaatgatgtagacactGatgttgcccatatctctttc	8	9	1	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	13	39264059	39264059	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.2578	p.D860N	0.834	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	33	0	0	59	15	20.27	-	-	-	A	39264059	G	A	39264059	3	1	666	1	0	0	0	0	1	0	0	0	6094	1290	45	2	2580	2	FREM2	13	39264059	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	1099482	39264059	75905819	104	57461										
ADPRHL1	0	genome.wustl.edu	37	chr13	114079385	114079385	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	accttttccctctcttctgcAtcataattgtcggggaagat	7	11	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	13	114079385	114079385	A	T	SNP	ADPRHL1	ENST00000375418	human	ensembl	69_37n	-1	known	missense	c.756	p.D252E	0.941	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRHL1	HGNC	ENSG00000153531	57	0	0	81	20	19.8	-	-	-	T	114079385	A	T	114079385	3	4	666	1	0	0	0	0	1	0	0	0	332	214	8	5	320	5	ADPRHL1	13	114079385	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	74815326	114079385	1090493	105	57462										
SYNE2	0	genome.wustl.edu	37	chr14	64547350	64547350	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gagtgtagaacctcacagttGaataaggtatggctgtgact	12	6	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	14	64547350	64547350	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	silent	c.11340	p.L3780	0.677	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	82	0	0	120	31	20.53	-	-	-	A	64547350	G	A	64547350	2	1	666	1	0	0	0	0	0	0	0	1	15538	1281	45	2		2	SYNE2	14	64547350	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		64547350	42802190	106	57463										
CYFIP1	0	genome.wustl.edu	37	chr15	22933648	22933648	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttcctggccaatcataacaaGatcacacaggtaaggctggt	9	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	22933648	22933648	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	silent	c.657	p.K219	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	43	0	0	39	8	17.02	-	-	-	A	22933648	G	A	22933648	2	1	666	1	0	0	0	0	0	0	0	1	4168	933	33	2		2	CYFIP1	15	22933648	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		22933648	79597744	107	57464										
RYR3	0	genome.wustl.edu	37	chr15	34123205	34123205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tggtattattcagggaaggaCatcattgatgaatctggaca	11	5	3	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	34123205	34123205	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.11376	p.D3792	1.000	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	38	0	0	46	7	13.21	-	-	-	T	34123205	C	T	34123205	2	4	666	1	0	0	0	0	0	0	0	1	13856	477	17	4		4	RYR3	15	34123205	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	11189557	34123205	68408187	108	57465										
C15orf29	0	genome.wustl.edu	37	chr15	34455763	34455763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tagaaaccatagacttacctCcttcatgttcttattagtga	5	9	2	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	34455763	34455763	C	T	SNP	C15orf29	ENST00000256544	human	ensembl	69_37n	-1	known	missense	c.115	p.E39K	1.000	NULL	NULL	-	no_errors	C15orf29	HGNC	ENSG00000134152	72	0	0	56	16	22.22	-	-	-	T	34455763	C	T	34455763	3	4	666	1	0	0	0	0	1	0	0	0	1801	864	30	2	835	2	C15orf29	15	34455763	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	332558	34455763	68075629	109	57466										
C15orf23	0	genome.wustl.edu	37	chr15	40683726	40683726	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agaccctggcatcacgacaaGaatccactactgatcacatg	7	13	2	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	40683726	40683726	G	A	SNP	C15orf23	ENST00000249776	human	ensembl	69_37n	1	known	missense	c.718	p.E240K	0.044	NULL	NULL	-	no_errors	C15orf23	HGNC	ENSG00000128944	49	0	0	57	15	20.83	-	-	-	A	40683726	G	A	40683726	3	1	666	1	0	0	0	0	1	0	0	0	1797	943	33	2	744	2	C15orf23	15	40683726	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	6227963	40683726	61847666	110	57467										
FBN1	0	genome.wustl.edu	37	chr15	48829850	48829850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	atttggaatgaagccacggcGgcaggggtgaggctgggcag	19	7	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	48829850	48829850	G	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.694	p.R232C	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	16	0	0	17	8	32	-	-	-	A	48829850	G	A	48829850	3	1	666	1	0	0	0	0	1	0	0	0	5748	1116	39	1	8161	1	FBN1	15	48829850	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	8146124	48829850	53701542	111	57468										
TIPIN	0	genome.wustl.edu	37	chr15	66671800	66671800	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cgctgaatttgaaacaagctCaatgtcatttccttcaaaga	6	9	3	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	66671800	66671800	C	G	SNP	TIPIN	ENST00000561773	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131	85	0	0	99	16	13.79	-	-	-	G	66671800	C	G	66671800	1	3	666	0	1	0	0	0	0	0	0	0	16020	841	29	2		2	TIPIN	15	66671800	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	17841950	66671800	35859592	112	57469										
CORO2B	0	genome.wustl.edu	37	chr15	69004035	69004035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gattgagccccgctctggccGtgttctgcaggtggaaccct	13	13	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	69004035	69004035	G	A	SNP	CORO2B	ENST00000566799	human	ensembl	69_37n	1	known	missense	c.638	p.R213H	0.939	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2B	HGNC	ENSG00000103647	16	0	0	43	9	17.31	-	-	-	A	69004035	G	A	69004035	3	1	666	1	0	0	0	0	1	0	0	0	3787	1145	40	1	656	1	CORO2B	15	69004035	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	2332235	69004035	33527357	113	57470										
PCSK6	0	genome.wustl.edu	37	chr15	101887939	101887939	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tcacagagattaccaaagctCttgttcaatctgccaccgga	7	12	4	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	15	101887939	101887939	C	T	SNP	PCSK6	ENST00000344273	human	ensembl	69_37n	-1	known	missense	c.1945	p.E649K	0.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK6	HGNC	ENSG00000140479	42	0	0	44	11	20	-	-	-	T	101887939	C	T	101887939	3	4	666	1	0	0	0	0	1	0	0	0	11677	922	32	2	1331	2	PCSK6	15	101887939	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	32883904	101887939	643453	114	57471										
ZNF598	0	genome.wustl.edu	37	chr16	2052577	2052577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtggcagaagtagtggtcgcGgcgcaggtgcttaagcagct	17	8	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	2052577	2052577	G	A	SNP	ZNF598	ENST00000431526	human	ensembl	69_37n	-1	known	missense	c.622	p.R208C	0.811	smart_Znf_C2H2-like	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962	35	0	0	68	17	20	-	-	-	A	2052577	G	A	2052577	3	1	666	1	0	0	0	0	1	0	0	0	18124	1116	39	1	2128	1	ZNF598	16	2052577	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		2052577	88302176	115	57472										
CASKIN1	0	genome.wustl.edu	37	chr16	2229628	2229628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cctggcagcggcaccttcttGgaggtgggtgtgggcgagcc	18	11	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	2229628	2229628	G	A	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	silent	c.3741	p.S1247	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	9	0	0	5	7	58.33	-	-	-	A	2229628	G	A	2229628	2	1	666	1	0	0	0	0	0	0	0	1	2691	1335	47	4		4	CASKIN1	16	2229628	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	177051	2229628	88125125	116	57473										
TFAP4	0	genome.wustl.edu	37	chr16	4322744	4322744	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	agtgggcaccatgaaatactCcatagcgatcggcccccctc	9	15	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	4322744	4322744	C	A	SNP	TFAP4	ENST00000204517	human	ensembl	69_37n	-1	known	nonsense	c.4	p.E2*	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFAP4	HGNC	ENSG00000090447	57	0	0	96	16	14.29	-	-	-	A	4322744	C	A	4322744	4	1	666	1	0	0	0	0	0	1	0	0	15887	864	30	2	1040	2	TFAP4	16	4322744	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	2093116	4322744	86032009	117	57474										
RBBP6	0	genome.wustl.edu	37	chr16	24581109	24581109	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgctgtgtccaaaaaagaaaAtattgtaaaacctgctaaag	7	6	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	24581109	24581109	A	G	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	missense	c.3098	p.N1033S	0.240	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257	14	0	0	9	10	52.63	-	-	-	G	24581109	A	G	24581109	3	3	666	1	0	0	0	0	1	0	0	0	13186	101	4	5	3218	5	RBBP6	16	24581109	Missense_Mutation	SNP	A	TCGA-C8-A3M7-01A-12D-A21Q-09	20258365	24581109	65773644	118	57475										
MAZ	0	genome.wustl.edu	37	chr16	29819170	29819170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtgtgcacggggcctcggccGcccgctaggccgtggggagg	20	13	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	29819170	29819170	G	A	SNP	MAZ	ENST00000563012	human	ensembl	69_37n	1	novel	missense	c.32	p.R11H	0.975	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon	MAZ	HGNC	ENSG00000103495	16	0	0	18	6	25	-	-	-	A	29819170	G	A	29819170	3	1	666	1	0	0	0	0	1	0	0	0	9411	1102	38	1		1	MAZ	16	29819170	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	5238061	29819170	60535583	119	57476										
ZNF689	0	genome.wustl.edu	37	chr16	30615847	30615847	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gccggtggctggccagcagtGaggggtaggcaaagcggcga	20	9	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	30615847	30615847	G	A	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	missense	c.1241	p.S414L	0.879	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	30	0	0	52	8	13.33	-	-	-	A	30615847	G	A	30615847	3	1	666	1	0	0	0	0	1	0	0	0	18190	1294	45	2	265	2	ZNF689	16	30615847	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	796677	30615847	59738906	120	57477										
STX4	0	genome.wustl.edu	37	chr16	31044468	31044468	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cggcgcgcccctccccacctCgcgggggccgtgtgggcgtc	16	19	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	31044468	31044468	C	G	SNP	STX4	ENST00000493902	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	STX4	HGNC	ENSG00000103496	10	0	0	24	6	20	-	-	-	G	31044468	C	G	31044468	1	3	666	0	1	0	0	0	0	0	0	0	15438	899	31	3		3	STX4	16	31044468	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	428621	31044468	59310285	121	57478										
ARMC5	0	genome.wustl.edu	37	chr16	31473745	31473745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tcgtcagcctggcttcccacCccaagcgggcagtacgcgag	12	16	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	31473745	31473745	C	G	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	missense	c.1162	p.P388A	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	13	0	0	56	12	17.65	-	-	-	G	31473745	C	G	31473745	3	3	666	1	0	0	0	0	1	0	0	0	958	623	22	4	887	4	ARMC5	16	31473745	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	429277	31473745	58881008	122	57479										
CDH1	0	genome.wustl.edu	37	chr16	68846048	68846049	+	Frame_Shift_Ins	INS	-	-	G													0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tctctgcagagtttccctacINSgtataccctggtggttcaag							TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	16	68846048	68846049	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1019_1020	p.Y341fs	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	81	0	0	76	24	24	-	-	-	G	68846049	-	G	68846048	7	5	666	1	0	1	1	0	0	0	0	0	3124	536	19	0	1049	0	CDH1	16	68846048	Frame_Shift_Ins	INS	-	TCGA-C8-A3M7-01A-12D-A21Q-09	37372303	68846048	21508705	123	57480										
MYH13	0	genome.wustl.edu	37	chr17	10210333	10210333	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctccacctctgcctggcactGagctatgtcagcctccagtt	8	16	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	10210333	10210333	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	nonsense	c.5218	p.Q1740*	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	67	0	0	43	15	25.86	-	-	-	A	10210333	G	A	10210333	4	1	666	1	0	0	0	0	0	1	0	0	10104	1299	45	2	622	2	MYH13	17	10210333	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		10210333	70984877	124	57481										
MYH1	0	genome.wustl.edu	37	chr17	10399279	10399279	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acatgcacctgggtgtgcagGagctgaacacgctcactggc	13	12	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	10399279	10399279	G	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.5157	p.L1719	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	70	0	0	57	20	25.97	-	-	-	T	10399279	G	T	10399279	2	4	666	1	0	0	0	0	0	0	0	1	10101	1161	41	2		2	MYH1	17	10399279	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	188946	10399279	70795931	125	57482										
NF1	0	genome.wustl.edu	37	chr17	29585447	29585447	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tatcaatcctgccattgtctCaccgtatgaagcagggattt	8	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	29585447	29585447	C	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.4259	p.S1420*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	56	0	0	59	20	25.32	-	-	-	G	29585447	C	G	29585447	4	3	666	1	0	0	0	0	0	1	0	0	10428	838	29	2	4446	2	NF1	17	29585447	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	19186168	29585447	51609763	126	57483										
NF1	0	genome.wustl.edu	37	chr17	29585516	29585516	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aaggggcttgaagttaatgtCaaaggtgaattattttgata	11	2	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	29585516	29585516	C	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.4328	p.S1443*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	55	0	0	47	15	23.44	-	-	-	G	29585516	C	G	29585516	4	3	666	1	0	0	0	0	0	1	0	0	10428	838	29	2	4515	2	NF1	17	29585516	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	69	29585516	51609694	127	57484										
MED1	0	genome.wustl.edu	37	chr17	37564556	37564556	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccatgcttcagtttatctatGacagctgtcaaggacggctt	9	10	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	37564556	37564556	G	A	SNP	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	silent	c.3918	p.V1306	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	20	0	0	18	4	18.18	-	-	-	A	37564556	G	A	37564556	2	1	666	1	0	0	0	0	0	0	0	1	9496	1277	45	2		2	MED1	17	37564556	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	7979040	37564556	43630654	128	57485										
ERBB2	0	genome.wustl.edu	37	chr17	37868193	37868193	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctccttagacaactacctttCtacggacgtgggatcctgca	8	13	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	37868193	37868193	C	G	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.914	p.S305C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	43	0	0	60	30	33.33	-	-	-	G	37868193	C	G	37868193	3	3	666	1	0	0	0	0	1	0	0	0	5243	913	32	2	944	2	ERBB2	17	37868193	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	303637	37868193	43327017	129	57486										
ERBB2	0	genome.wustl.edu	37	chr17	37868682	37868682	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tctttgggagcctggcatttCtgccggagagctttgatggg	15	8	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	37868682	37868682	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	silent	c.1129	p.L377	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	23	0	0	27	5	15.62	-	-	-	T	37868682	C	T	37868682	2	4	666	1	0	0	0	0	0	0	0	1	5243	912	32	2		2	ERBB2	17	37868682	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	489	37868682	43326528	130	57487										
CSF3	0	genome.wustl.edu	37	chr17	38172018	38172018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccctgggccctgccagctccCtgccccagagcttcctgctc	9	21	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	38172018	38172018	C	G	SNP	CSF3	ENST00000225474	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.491	superfamily_4_helix_cytokine-like_core,pirsf_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_IL6_MGF_GCSF	-	no_errors	CSF3	HGNC	ENSG00000108342	26	0	0	21	6	22.22	-	-	-	G	38172018	C	G	38172018	3	3	666	1	0	0	0	0	1	0	0	0	3968	680	24	4	121	4	CSF3	17	38172018	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	303336	38172018	43023192	131	57488										
HOXB13	0	genome.wustl.edu	37	chr17	46804342	46804342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcaactgccccttgctgtacGgaatgcgtttcttgcggccg	12	13	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	46804342	46804342	G	A	SNP	HOXB13	ENST00000290295	human	ensembl	69_37n	-1	known	missense	c.665	p.P222L	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXB13	HGNC	ENSG00000159184	21	0	0	31	6	16.22	-	-	-	A	46804342	G	A	46804342	3	1	666	1	0	0	0	0	1	0	0	0	7351	1116	39	1	193	1	HOXB13	17	46804342	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	8632324	46804342	34390868	132	57489										
EFCAB3	0	genome.wustl.edu	37	chr17	60451215	60451215	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	aattcaataatggagggcctGaagaagtttaaacgtaagtg	11	4	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	60451215	60451215	G	T	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	silent	c.75	p.L25	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	62	0	0	43	6	12.24	-	-	-	T	60451215	G	T	60451215	2	4	666	1	0	0	0	0	0	0	0	1	4970	1277	45	2		2	EFCAB3	17	60451215	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	13646873	60451215	20743995	133	57490										
RNF213	0	genome.wustl.edu	37	chr17	78261666	78261666	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggggaacaagtccgcttcctCagagctggcttccttgcccc	11	15	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	17	78261666	78261666	C	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.314	p.S105L	0.001	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	23	0	0	20	5	20	-	-	-	T	78261666	C	T	78261666	3	4	666	1	0	0	0	0	1	0	0	0	13563	838	29	2	475	2	RNF213	17	78261666	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	17810451	78261666	2933544	134	57491										
FAM59A	0	genome.wustl.edu	37	chr18	29890260	29890260	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cactggctcctttatatctcGgtcttgttccagcagcttga	8	12	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	18	29890260	29890260	G	A	SNP	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	nonsense	c.289	p.R97*	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	46	0	0	53	19	26.39	-	-	-	A	29890260	G	A	29890260	4	1	666	1	0	0	0	0	0	1	0	0	5637	1124	39	1	2354	1	FAM59A	18	29890260	Nonsense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		29890260	48186988	135	57492										
NDUFS7	0	genome.wustl.edu	37	chr19	1390884	1390884	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccgcagagttctctgtggccCatgaccttcggcctggcctg	12	15	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	1390884	1390884	C	T	SNP	NDUFS7	ENST00000233627	human	ensembl	69_37n	1	known	silent	c.243	p.P81	0.994	tigrfam_NADH_UQ_OxRdtase_20Kd_su	pfam_NADH_UbQ_OxRdtase-like_20kDa,tigrfam_NADH_UQ_OxRdtase_20Kd_su	-	no_errors	NDUFS7	HGNC	ENSG00000115286	31	0	0	44	13	22.41	-	-	-	T	1390884	C	T	1390884	2	4	666	1	0	0	0	0	0	0	0	1	10369	581	21	4		4	NDUFS7	19	1390884	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		1390884	57738099	136	57493										
UQCR11	0	genome.wustl.edu	37	chr19	1599413	1599413	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cagcccactgaaacttaccaGagcagtctgtgaagggtttg	11	10	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	1599413	1599413	G	A	SNP	UQCR11	ENST00000593029	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UQCR11	HGNC	ENSG00000127540	58	0	0	127	28	18.06	-	-	-	A	1599413	G	A	1599413	1	1	666	0	1	0	0	0	0	0	0	0	17114	957	33	2		2	UQCR11	19	1599413	RNA	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	208529	1599413	57529570	137	57494										
TLE6	0	genome.wustl.edu	37	chr19	2989231	2989231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cgcggcacgtgttcacctgtGgcagaagaggcatcaaggtg	15	10	2	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	2989231	2989231	G	A	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	missense	c.913	p.G305S	0.958	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	8	0	0	16	6	27.27	-	-	-	A	2989231	G	A	2989231	3	1	666	1	0	0	0	0	1	0	0	0	16037	1348	47	4	955	4	TLE6	19	2989231	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	1389818	2989231	56139752	138	57495										
EEF2	0	genome.wustl.edu	37	chr19	3982831	3982831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gttgcccatggggccgctctCgccctcgccgtaggtggaga	15	14	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	3982831	3982831	C	T	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.586	p.E196K	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	34	0	0	44	13	22.41	-	-	-	T	3982831	C	T	3982831	3	4	666	1	0	0	0	0	1	0	0	0	4964	893	31	1	2038	1	EEF2	19	3982831	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	993600	3982831	55146152	139	57496										
IL27RA	0	genome.wustl.edu	37	chr19	14142743	14142743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gctgcccaagctggcgctgcTgcctctgttgtgggtgcttt	14	12	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	14142743	14142743	T	C	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.59	p.L20P	0.003	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	15	0	0	24	6	20	-	-	-	C	14142743	T	C	14142743	3	2	666	1	0	0	0	0	1	0	0	0	7735	1580	55	5	61	5	IL27RA	19	14142743	Missense_Mutation	SNP	T	TCGA-C8-A3M7-01A-12D-A21Q-09	10159912	14142743	44986240	140	57497										
CAPN12	0	genome.wustl.edu	37	chr19	39221790	39221790	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acacaggacacgaaccgctcGaagtccacacgcagacggct	10	15	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	39221790	39221790	G	A	SNP	CAPN12	ENST00000328867	human	ensembl	69_37n	-1	known	silent	c.2031	p.F677	0.509	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472	34	0	0	48	17	26.15	-	-	-	A	39221790	G	A	39221790	2	1	666	1	0	0	0	0	0	0	0	1	2650	1049	37	1		1	CAPN12	19	39221790	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	25079047	39221790	19907193	141	57498										
PHLDB3	0	genome.wustl.edu	37	chr19	43999763	43999763	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gacccggatccggtgctgcaGagcacccctctgtcccggtt	12	16	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	43999763	43999763	G	A	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	silent	c.835	p.L279	0.410	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	32	0	0	36	14	28	-	-	-	A	43999763	G	A	43999763	2	1	666	1	0	0	0	0	0	0	0	1	11927	933	33	2		2	PHLDB3	19	43999763	Silent	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	4777973	43999763	15129220	142	57499										
RASIP1	0	genome.wustl.edu	37	chr19	49228118	49228118	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcccagggtaggtctcaatcCtggaggcatggcccccagct	13	14	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	19	49228118	49228118	C	A	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	nonsense	c.2227	p.G743*	0.873	pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538	34	0	0	60	7	10.45	-	-	-	A	49228118	C	A	49228118	4	1	666	1	0	0	0	0	0	1	0	0	13161	690	24	4	680	4	RASIP1	19	49228118	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	5228355	49228118	9900865	143	57500										
ANGPT4	0	genome.wustl.edu	37	chr20	858903	858903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ccacacgcagagagtaggctGcccttctggtgagctggtgc	14	12	1	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	858903	858903	G	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.1121	p.A374E	0.002	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	13	0	0	32	10	23.81	-	-	-	T	858903	G	T	858903	3	4	666	1	0	0	0	0	1	0	0	0	612	1319	46	4	402	4	ANGPT4	20	858903	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		858903	62166617	144	57501										
SIRPG	0	genome.wustl.edu	37	chr20	1629905	1629905	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tttttgattgtagattaattCccggcctggtccaactcctc	7	11	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	1629905	1629905	C	G	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.223	p.E75Q	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	68	0	0	85	25	22.73	-	-	-	G	1629905	C	G	1629905	3	3	666	1	0	0	0	0	1	0	0	0	14425	864	30	2	956	2	SIRPG	20	1629905	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	771002	1629905	61395615	145	57502										
TRPC4AP	0	genome.wustl.edu	37	chr20	33591329	33591329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cttcttgctgtgctccatccGctgcagcagccgcaggtaca	10	15	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	33591329	33591329	G	A	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	missense	c.2140	p.R714W	1.000	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	93	0	0	175	22	11.17	-	-	-	A	33591329	G	A	33591329	3	1	666	1	0	0	0	0	1	0	0	0	16677	1086	38	1	261	1	TRPC4AP	20	33591329	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	31961424	33591329	29434191	146	57503										
FAM65C	0	genome.wustl.edu	37	chr20	49225878	49225878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gtgaacctccagggccccctCgatgagccacatgtcctgca	10	16	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	49225878	49225878	C	T	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.592	p.E198K	1.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	29	0	0	46	9	16.36	-	-	-	T	49225878	C	T	49225878	3	4	666	1	0	0	0	0	1	0	0	0	5646	893	31	1	2320	1	FAM65C	20	49225878	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	15634549	49225878	13799642	147	57504										
TSHZ2	0	genome.wustl.edu	37	chr20	51872433	51872433	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	accaccccaaagccagcctcCtcctccagggtcccccccat	5	23	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	51872433	51872433	C	A	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	silent	c.2436	p.S812	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	19	0	0	33	16	32.65	-	-	-	A	51872433	C	A	51872433	2	1	666	1	0	0	0	0	0	0	0	1	16720	668	24	4		4	TSHZ2	20	51872433	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	2646555	51872433	11153087	148	57505										
STMN3	0	genome.wustl.edu	37	chr20	62275115	62275115	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ggaggactccttgccttcctCcgctcctcggctgcctccag	10	18	0	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	20	62275115	62275115	C	T	SNP	STMN3	ENST00000370053	human	ensembl	69_37n	-1	known	silent	c.285	p.R95	1.000	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN3	HGNC	ENSG00000197457	17	0	0	26	6	18.75	-	-	-	T	62275115	C	T	62275115	2	4	666	1	0	0	0	0	0	0	0	1	15401	842	30	2		2	STMN3	20	62275115	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	10402682	62275115	750405	149	57506										
GRIK1	0	genome.wustl.edu	37	chr21	30934055	30934055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tggtggactccatcagcagcGcgtagtctgtggtgagcact	14	10	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	21	30934055	30934055	G	A	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2252	p.A751V	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	45	0	0	81	19	19	-	-	-	A	30934055	G	A	30934055	3	1	666	1	0	0	0	0	1	0	0	0	6824	1087	38	1	682	1	GRIK1	21	30934055	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09		30934055	17195840	150	57507										
KRTAP10-6	0	genome.wustl.edu	37	chr21	46011676	46011676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	acaggcacgcagcagacgggCacgcagcaggcctgctggca	15	14	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	21	46011676	46011676	C	T	SNP	KRTAP10-6	ENST00000400368	human	ensembl	69_37n	-1	known	silent	c.690	p.V230	0.000	NULL	NULL	-	no_errors	KRTAP10-6	HGNC	ENSG00000188155	66	0	0	136	24	15	-	-	-	T	46011676	C	T	46011676	2	4	666	1	0	0	0	0	0	0	0	1	8566	697	25	4		4	KRTAP10-6	21	46011676	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	15077621	46011676	2118219	151	57508										
MCM3AP	0	genome.wustl.edu	37	chr21	47690281	47690281	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcacaagaaccacctgctttCttccaactctgcaagcacag	6	15	2	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	21	47690281	47690281	C	T	SNP	MCM3AP	ENST00000479557	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCM3AP	HGNC	ENSG00000160294	20	0	0	20	4	16.67	-	-	-	T	47690281	C	T	47690281	1	4	666	0	1	0	0	0	0	0	0	0	9459	928	32	2		2	MCM3AP	21	47690281	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1678605	47690281	439614	152	57509										
RFPL2	0	genome.wustl.edu	37	chr22	32588949	32588949	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cttcagcttgggctccagttCcttgatgtgggaagccagcc	12	12	1	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	22	32588949	32588949	C	G	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	missense	c.496	p.E166Q	0.464	pfam_RDM_domain_RFPL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	59	0	0	73	21	22.34	-	-	-	G	32588949	C	G	32588949	3	3	666	1	0	0	0	0	1	0	0	0	13337	864	30	2	648	2	RFPL2	22	32588949	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09		32588949	18715617	153	57510										
FBXO7	0	genome.wustl.edu	37	chr22	32891506	32891506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgtcagagttcaagacacaGattggaaagaagtaggtatt	11	5	2	4			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	22	32891506	32891506	G	C	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	missense	c.1171	p.D391H	1.000	superfamily_F-box_dom_cyclin-like	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	19	0	0	26	8	23.53	-	-	-	C	32891506	G	C	32891506	3	2	666	1	0	0	0	0	1	0	0	0	5806	942	33	2	1242	2	FBXO7	22	32891506	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	302557	32891506	18413060	154	57511										
ZC3H7B	0	genome.wustl.edu	37	chr22	41753373	41753373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgctgcaagaggacggggaCcttgccggtgccaccccaga	14	14	0	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	22	41753373	41753373	C	G	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.2874	p.D958E	0.002	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	44	0	0	57	21	26.92	-	-	-	G	41753373	C	G	41753373	3	3	666	1	0	0	0	0	1	0	0	0	17669	506	18	4	2960	4	ZC3H7B	22	41753373	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	8861867	41753373	9551193	155	57512										
ADM2	0	genome.wustl.edu	37	chr22	50921701	50921701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gagagaggctgaactggccaGaagtggcccctccgctgctg	15	12	0	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	22	50921701	50921701	G	A	SNP	ADM2	ENST00000362068	human	ensembl	69_37n	1	known	missense	c.566	p.R189K	0.000	NULL	NULL	-	no_errors	ADM2	HGNC	ENSG00000128165	11	0	0	30	14	31.82	-	-	-	A	50921701	G	A	50921701	3	1	666	1	0	0	0	0	1	0	0	0	322	957	33	2		2	ADM2	22	50921701	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	9168328	50921701	382865	156	57513										
SHROOM4	0	genome.wustl.edu	37	chrX	50350778	50350778	+	Missense_Mutation	SNP	T	T	G													0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ctgctgctgctgttgctgctTctgctgctgggctgcacgaa							TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	50350778	50350778	T	G	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.3364	p.K1122Q	0.014	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	18	0	0	16	5	23.81	-	-	-	G	50350778	T	G	50350778	3	3	666	1	0	0	0	0	1	0	0	0	14385	1792	62	5	1133	5	SHROOM4	23	50350778	Missense_Mutation	SNP	T	TCGA-C8-A3M7-01A-12D-A21Q-09		50350778	104919782	157	57514	443	2								
SHROOM4	0	genome.wustl.edu	37	chrX	50350782	50350782	+	Silent	SNP	C	C	T													0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tgctgctgttgctgcttctgCtgctgggctgcacgaaagag							TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	50350782	50350782	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.3360	p.Q1120	0.943	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	18	0	0	16	5	23.81	-	-	-	T	50350782	C	T	50350782	2	4	666	1	0	0	0	0	0	0	0	1	14385	796	28	4		4	SHROOM4	23	50350782	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	4	50350782	104919778	158	57515	443	2								
GSPT2	0	genome.wustl.edu	37	chrX	51487020	51487020	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gcaccggcgcgggataccctCaaggtaaaaggatgggacgg	16	10	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	51487020	51487020	C	T	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	nonsense	c.298	p.Q100*	0.046	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	29	0	0	23	6	20.69	-	-	-	T	51487020	C	T	51487020	4	4	666	1	0	0	0	0	0	1	0	0	6878	827	29	2	300	2	GSPT2	23	51487020	Nonsense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1136238	51487020	103783540	159	57516										
FAM123B	0	genome.wustl.edu	37	chrX	63410388	63410388	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttcgtcctcctcatctgaatCttcctgctgggcctgcagct	8	15	3	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	63410388	63410388	C	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.2779	p.D927Y	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	59	0	0	74	11	12.94	-	-	-	A	63410388	C	A	63410388	3	1	666	1	0	0	0	0	1	0	0	0	5463	913	32	2	632	2	FAM123B	23	63410388	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	11923368	63410388	91860172	160	57517										
MED12	0	genome.wustl.edu	37	chrX	70349589	70349589	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	gaggaacagaagaacttccaGaggaggagggaggaggtggc	19	5	0	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	70349589	70349589	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.3751	p.E1251K	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	23	0	0	38	6	13.64	-	-	-	A	70349589	G	A	70349589	3	1	666	1	0	0	0	0	1	0	0	0	9499	943	33	2	3857	2	MED12	23	70349589	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	6939201	70349589	84920971	161	57518										
PAK3	0	genome.wustl.edu	37	chrX	110388139	110388139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cggtcgcttcaagtcaatcaGagggaaaaatggtatgagtg	13	6	3	2			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	110388139	110388139	G	A	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	missense	c.328	p.E110K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	35	0	0	57	16	21.92	-	-	-	A	110388139	G	A	110388139	3	1	666	1	0	0	0	0	1	0	0	0	11475	943	33	2	338	2	PAK3	23	110388139	Missense_Mutation	SNP	G	TCGA-C8-A3M7-01A-12D-A21Q-09	40038550	110388139	44882421	162	57519										
KIAA1210	0	genome.wustl.edu	37	chrX	118227690	118227690	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	tggtttggttatgctcttttCttcttcagaaaccaatggaa	8	7	4	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	118227690	118227690	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475K	0.178	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	68	0	0	55	14	20.29	-	-	-	T	118227690	C	T	118227690	3	4	666	1	0	0	0	0	1	0	0	0	8266	922	32	2	3726	2	KIAA1210	23	118227690	Missense_Mutation	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	7839551	118227690	37042870	163	57520										
MBNL3	0	genome.wustl.edu	37	chrX	131540295	131540295	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	ttttggagcataagctgcatCtgctgggcgaacatggctgc	13	9	1	0			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	131540295	131540295	C	T	SNP	MBNL3	ENST00000370853	human	ensembl	69_37n	-1	known	silent	c.303	p.Q101	0.994	NULL	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770	42	0	0	51	9	15	-	-	-	T	131540295	C	T	131540295	2	4	666	1	0	0	0	0	0	0	0	1	9426	912	32	2		2	MBNL3	23	131540295	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	13312605	131540295	23730265	164	57521										
FAM127A	0	genome.wustl.edu	37	chrX	134167088	134167088	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	cacactggacagaccacccaCtgccgccgctgccaagccct	8	20	0	1			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	134167088	134167088	C	T	SNP	FAM127A	ENST00000495563	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127A	HGNC	ENSG00000134590	37	0	0	76	9	10.59	-	-	-	T	134167088	C	T	134167088	1	4	666	0	1	0	0	0	0	0	0	0	5471	580	20	4		4	FAM127A	23	134167088	RNA	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	2626793	134167088	21103472	165	57522										
HTATSF1	0	genome.wustl.edu	37	chrX	135594142	135594142	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.460606060606061	76	3.58576171294862e-29	4.25231124807396	4.58416130917592	4.15887773572486	4.56483068930654e-10	1.11610110353545e-07	58	actggcagcagctttattctCagtagcgatgatgatgacga	11	8	1	3			TCGA-C8-A3M7-01A-12D-A21Q-09	TCGA-C8-A3M7-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbe3a4c-23ef-45a3-a01c-59ba13f053e4	d04ce8a0-807d-478f-adae-56fdef6c1ecc	X	135594142	135594142	C	T	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	silent	c.2238	p.L746	0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	52	0	0	76	23	23.23	-	-	-	T	135594142	C	T	135594142	2	4	666	1	0	0	0	0	0	0	0	1	7487	813	29	2		2	HTATSF1	23	135594142	Silent	SNP	C	TCGA-C8-A3M7-01A-12D-A21Q-09	1427054	135594142	19676418	166	57523										
AURKAIP1	0	genome.wustl.edu	37	chr1	1310127	1310127	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	cagctgggaagtcaggcgccCcaggagcatggtctgtgggc	17	11	2	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	1310127	1310127	C	G	SNP	AURKAIP1	ENST00000321751	human	ensembl	69_37n	-1	known	missense	c.10	p.G4R	0.055	NULL	pfam_DUF1713_mit	-	no_errors	AURKAIP1	HGNC	ENSG00000175756	51	0	0	60	11	15.49	-	-	-	G	1310127	C	G	1310127	3	3	667	1	0	0	0	0	1	0	0	0	1226	623	22	4	601	4	AURKAIP1	1	1310127	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		1310127	247940494	1	57524										
DDI2	0	genome.wustl.edu	37	chr1	15956963	15956963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcttggacaatccagccttgCtccgagatatgttgctggcc	11	12	0	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	15956963	15956963	C	G	SNP	DDI2	ENST00000480945	human	ensembl	69_37n	1	known	missense	c.412	p.L138V	1.000	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,pfam_Ubiquitin,superfamily_Peptidase_aspartic,pfscan_Ubiquitin_supergroup	-	no_errors	DDI2	HGNC	ENSG00000197312	32	0	0	16	12	42.86	-	-	-	G	15956963	C	G	15956963	3	3	667	1	0	0	0	0	1	0	0	0	4360	797	28	4	422	4	DDI2	1	15956963	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	14646836	15956963	233293658	2	57525										
UBR4	0	genome.wustl.edu	37	chr1	19474500	19474500	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	cagttaccttgtggctgtggTaggccgagcggctggtgtgc	17	9	0	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	19474500	19474500	T	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.7616	p.Y2539C	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	30	0	0	9	10	52.63	-	-	-	C	19474500	T	C	19474500	3	2	667	1	0	0	0	0	1	0	0	0	17001	1638	57	5	8159	5	UBR4	1	19474500	Missense_Mutation	SNP	T	TCGA-C8-A3M8-01A-11D-A20S-09	3517537	19474500	229776121	3	57526										
PRDX1	0	genome.wustl.edu	37	chr1	45984654	45984654	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ctttaaactgaccatctggcAtaacagctgtggctttgaag	9	9	1	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	45984654	45984654	A	G	SNP	PRDX1	ENST00000262746	human	ensembl	69_37n	-1	known	missense	c.62	p.M21T	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX1	HGNC	ENSG00000117450	58	0	0	42	13	23.64	-	-	-	G	45984654	A	G	45984654	3	3	667	1	0	0	0	0	1	0	0	0	12545	217	8	5	557	5	PRDX1	1	45984654	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	26510154	45984654	203265967	4	57527										
SH2D2A	0	genome.wustl.edu	37	chr1	156783649	156783649	+	Silent	SNP	G	G	T													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggggcgcgtacctgtcgggcGaggggctcggtgagcgtctc							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	156783649	156783649	G	T	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	silent	c.588	p.L196	0.329	pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	19	0	0	17	5	22.73	-	-	-	T	156783649	G	T	156783649	2	4	667	1	0	0	0	0	0	0	0	1	14320	1045	37	3		3	SH2D2A	1	156783649	Silent	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	110798995	156783649	92466972	5	57528	444	2								
SH2D2A	0	genome.wustl.edu	37	chr1	156783650	156783650	+	Missense_Mutation	SNP	A	A	C													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gggcgcgtacctgtcgggcgAggggctcggtgagcgtctcc							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	156783650	156783650	A	C	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	missense	c.587	p.L196R	0.900	pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	19	0	0	17	5	22.73	-	-	-	C	156783650	A	C	156783650	3	2	667	1	0	0	0	0	1	0	0	0	14320	304	11	5	628	5	SH2D2A	1	156783650	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	1	156783650	92466971	6	57529	444	2								
FAM5B	0	genome.wustl.edu	37	chr1	177250856	177250857	+	RNA	DEL	AC	AC	-													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcgtgcgtgcgcgcacgcatAcacacacacacacacacact							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	1	177250856	177250857	AC	-	DEL	FAM5B	ENST00000478325	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	FAM5B	HGNC	ENSG00000198797	32	0	0	51	6	10.34	-	-	-	-	177250857	AC	-	177250856	6	5	667	0	1	1	0	1	0	0	0	0	5638	406	14	0		0	FAM5B	1	177250856	RNA	DEL	AC	TCGA-C8-A3M8-01A-11D-A20S-09	20467206	177250856	71999765	7	57530										
COL4A4	0	genome.wustl.edu	37	chr2	227945200	227945200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ttctccagcatgtccatcccGaccatgtgatcctggctgcc	8	16	1	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	2	227945200	227945200	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.1762	p.R588W	0.008	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	28	0	0	22	11	33.33	-	-	-	A	227945200	G	A	227945200	3	1	667	1	0	0	0	0	1	0	0	0	3723	1057	37	1	3410	1	COL4A4	2	227945200	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		227945200	15254173	8	57531										
PIK3CA	0	genome.wustl.edu	37	chr3	178952074	178952074	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gagtatttcatgaaacaaatGaatgatgcacatcatggtgg	10	5	2	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	3	178952074	178952074	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3129	p.M1043I	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	22	0	0	5	14	73.68	-	-	-	C	178952074	G	C	178952074	3	2	667	1	0	0	0	0	1	0	0	0	11987	1290	45	2	3207	2	PIK3CA	3	178952074	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		178952074	19070356	9	57532										
HTR3D	0	genome.wustl.edu	37	chr3	183752970	183752970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	aaagctgctattccaggattCacaccttcaactggtgacat	7	11	2	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	3	183752970	183752970	C	T	SNP	HTR3D	ENST00000382489	human	ensembl	69_37n	1	known	missense	c.244	p.H82Y	0.001	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	60	0	0	87	14	13.86	-	-	-	T	183752970	C	T	183752970	3	4	667	1	0	0	0	0	1	0	0	0	7501	838	29	2	320	2	HTR3D	3	183752970	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	4800896	183752970	14269460	10	57533										
MUC4	0	genome.wustl.edu	37	chr3	195505918	195505918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ctgaggaagtgctggtgacaGgaagaggggtgccgtgacct	18	7	0	4			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	3	195505918	195505918	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12533	p.P4178H	0.150	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	44	0	0	60	8	11.76	-	-	-	T	195505918	G	T	195505918	3	4	667	1	0	0	0	0	1	0	0	0	10050	1000	35	4		4	MUC4	3	195505918	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	11752948	195505918	2516512	11	57534										
MAP3K1	0	genome.wustl.edu	37	chr5	56168490	56168491	+	Frame_Shift_Ins	INS	-	-	A													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	cagaagagtgtagaagaaatINSagagaacctttaatatgtcc							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	5	56168490	56168491	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1446_1447	p.R482fs	0.994:1.000	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	32	0	0	39	11	22	-	-	-	A	56168491	-	A	56168490	7	5	667	1	0	1	1	0	0	0	0	0	9314	1403	49	0	1476	0	MAP3K1	5	56168490	Frame_Shift_Ins	INS	-	TCGA-C8-A3M8-01A-11D-A20S-09		56168490	124746770	12	57535										
TPMT	0	genome.wustl.edu	37	chr6	18148076	18148076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tttcatctcaaccgcttttcCgcaaagaggaaaaaataccc	5	12	2	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	6	18148076	18148076	C	T	SNP	TPMT	ENST00000309983	human	ensembl	69_37n	-1	known	missense	c.211	p.G71R	1.000	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	-	no_errors	TPMT	HGNC	ENSG00000137364	35	0	0	29	31	50.82	-	-	-	T	18148076	C	T	18148076	3	4	667	1	0	0	0	0	1	0	0	0	16505	661	23	1	554	1	TPMT	6	18148076	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		18148076	152966991	13	57536										
OR2B6	0	genome.wustl.edu	37	chr6	27925280	27925280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tgctagtaaatttatgcagcAtcaggaaagtaatcagttat	8	5	2	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	6	27925280	27925280	A	G	SNP	OR2B6	ENST00000244623	human	ensembl	69_37n	1	known	missense	c.262	p.I88V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B6	HGNC	ENSG00000124657	54	0	0	27	12	30.77	-	-	-	G	27925280	A	G	27925280	3	3	667	1	0	0	0	0	1	0	0	0	11064	217	8	5	264	5	OR2B6	6	27925280	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	9777204	27925280	143189787	14	57537										
TRIM15	0	genome.wustl.edu	37	chr6	30131731	30131731	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gaggagcacggcgagaagatCtacttcttctgcgagaacga	13	9	3	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	6	30131731	30131731	C	T	SNP	TRIM15	ENST00000376694	human	ensembl	69_37n	1	known	silent	c.270	p.I90	0.802	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM15	HGNC	ENSG00000204610	80	0	0	33	19	36.54	-	-	-	T	30131731	C	T	30131731	2	4	667	1	0	0	0	0	0	0	0	1	16586	903	32	2		2	TRIM15	6	30131731	Silent	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	2206451	30131731	140983336	15	57538										
MLL3	0	genome.wustl.edu	37	chr7	151962231	151962231	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	agtgctgaccacaagtagtaCaaaagaactgatctaagagg	10	7	1	4			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	7	151962231	151962231	C	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.1076	p.C359S	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	56	0	0	68	16	19.05	-	-	-	G	151962231	C	G	151962231	3	3	667	1	0	0	0	0	1	0	0	0	9693	478	17	4	13867	4	MLL3	7	151962231	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		151962231	7176432	16	57539										
WDR38	0	genome.wustl.edu	37	chr9	127619645	127619645	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcccccctccttttccaggtCaaagtctgggactgcaacac	8	16	2	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	9	127619645	127619645	C	G	SNP	WDR38	ENST00000373574	human	ensembl	69_37n	1	known	silent	c.771	p.V257	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR38	HGNC	ENSG00000136918	27	0	0	23	16	41.03	-	-	-	G	127619645	C	G	127619645	2	3	667	1	0	0	0	0	0	0	0	1	17389	813	29	2		2	WDR38	9	127619645	Silent	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		127619645	13593786	17	57540										
PIP5KL1	0	genome.wustl.edu	37	chr9	130688041	130688041	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcgtgagccacggcgcccggCcgaatctgggctcttaataa	13	13	2	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	9	130688041	130688041	C	G	SNP	PIP5KL1	ENST00000476624	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PIP5KL1	HGNC	ENSG00000167103	28	0	0	14	8	36.36	-	-	-	G	130688041	C	G	130688041	1	3	667	0	1	0	0	0	0	0	0	0	12016	754	26	4		4	PIP5KL1	9	130688041	RNA	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	3068396	130688041	10525390	18	57541										
DBH	0	genome.wustl.edu	37	chr9	136505083	136505083	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcttttcaagaggccctttgGcacctgcgaccccaaggatt	10	13	1	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	9	136505083	136505083	G	C	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	missense	c.455	p.G152A	0.978	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	20	0	0	16	11	40.74	-	-	-	C	136505083	G	C	136505083	3	2	667	1	0	0	0	0	1	0	0	0	4282	1203	42	4	461	4	DBH	9	136505083	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	5817042	136505083	4708348	19	57542										
CDH23	0	genome.wustl.edu	37	chr10	73491898	73491898	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tcggccactgaccaggccccGcccttcaaccagggcttctg	10	18	2	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	10	73491898	73491898	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	silent	c.3879	p.P1293	0.071	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	29	0	0	26	14	34.15	-	-	-	A	73491898	G	A	73491898	2	1	667	1	0	0	0	0	0	0	0	1	3137	1074	38	1		1	CDH23	10	73491898	Silent	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		73491898	62042849	20	57543										
MRPS16	0	genome.wustl.edu	37	chr10	75011558	75011558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggcttagagaggtgggccccGcagccaatccaatgacggat	14	11	0	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	10	75011558	75011558	G	A	SNP	MRPS16	ENST00000372945	human	ensembl	69_37n	-1	known	silent	c.237	p.C79	0.957	pfam_Ribosomal_S16,superfamily_Ribosomal_S16_dom,tigrfam_Ribosomal_S16	pfam_Ribosomal_S16,superfamily_Ribosomal_S16_dom,tigrfam_Ribosomal_S16	-	no_errors	MRPS16	HGNC	ENSG00000182180	42	0	0	38	16	29.63	-	-	-	A	75011558	G	A	75011558	2	1	667	1	0	0	0	0	0	0	0	1	9898	1079	38	1		1	MRPS16	10	75011558	Silent	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	1519660	75011558	60523189	21	57544										
EEF1G	0	genome.wustl.edu	37	chr11	62340150	62340150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	agagcacgcggacctgagccCcgctgtactgagcagcgatg	14	13	0	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	11	62340150	62340150	C	T	SNP	EEF1G	ENST00000378019	human	ensembl	69_37n	-1	known	missense	c.227	p.G76E	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772	29	0	0	27	13	32.5	-	-	-	T	62340150	C	T	62340150	3	4	667	1	0	0	0	0	1	0	0	0	4963	623	22	4	1272	4	EEF1G	11	62340150	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		62340150	72666366	22	57545										
MRGPRF	0	genome.wustl.edu	37	chr11	68773560	68773560	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tggagaaggggttcctcttgAtggagaagccgaaaaaccag	14	7	1	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	11	68773560	68773560	A	C	SNP	MRGPRF	ENST00000309099	human	ensembl	69_37n	-1	known	missense	c.218	p.I73S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRF	HGNC	ENSG00000172935	34	0	0	76	9	10.59	-	-	-	C	68773560	A	C	68773560	3	2	667	1	0	0	0	0	1	0	0	0	9837	333	12	5	817	5	MRGPRF	11	68773560	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	6433410	68773560	66232956	23	57546										
SHANK2	0	genome.wustl.edu	37	chr11	70336336	70336336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	aggggcctaaggctgtgtttGaaagcccaggggcaacttct	14	9	1	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	11	70336336	70336336	G	C	SNP	SHANK2	ENST00000357171	human	ensembl	69_37n	-1	known	missense	c.832	p.Q278E	0.005	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHANK2	HGNC	ENSG00000162105	28	0	0	78	15	16.13	-	-	-	C	70336336	G	C	70336336	3	2	667	1	0	0	0	0	1	0	0	0	14354	1305	45	2		2	SHANK2	11	70336336	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	1562776	70336336	64670180	24	57547			1	100		2	2	51	G		8.23696e-05
SHANK2	0	genome.wustl.edu	37	chr11	70336386	70336386	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tgccacacttcttacctattGatttctgccttcgcatcgta	5	13	2	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	11	70336386	70336386	G	C	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	nonsense	c.2549	p.S850*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	40	0	0	105	24	18.6	-	-	-	C	70336386	G	C	70336386	4	2	667	1	0	0	0	0	0	1	0	0	14354	1294	45	2	3019	2	SHANK2	11	70336386	Nonsense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	50	70336386	64670130	25	57548			1	100		2	2	51	G		8.23696e-05
SLC6A13	0	genome.wustl.edu	37	chr12	369124	369124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tcttgttgttccagtgccccCgctccagggtgccatcttcc	9	16	2	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	12	369124	369124	C	G	SNP	SLC6A13	ENST00000343164	human	ensembl	69_37n	-1	known	missense	c.95	p.R32P	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	67	0	0	52	11	17.46	-	-	-	G	369124	C	G	369124	3	3	667	1	0	0	0	0	1	0	0	0	14765	652	23	3	1769	3	SLC6A13	12	369124	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		369124	133482771	26	57549										
TMEM117	0	genome.wustl.edu	37	chr12	44783123	44783123	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	agtaattgaaatgaggtgatGatacctaattatgttttcct	8	4	0	4			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	12	44783123	44783123	G	A	SNP	TMEM117	ENST00000546978	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMEM117	HGNC	ENSG00000139173	26	0	0	18	4	18.18	-	-	-	A	44783123	G	A	44783123	1	1	667	0	1	0	0	0	0	0	0	0	16126	1305	45	2		2	TMEM117	12	44783123	RNA	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	44413999	44783123	89068772	27	57550										
EIF2B1	0	genome.wustl.edu	37	chr12	124111642	124111642	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	atacactaaatcgcttcttgGccgccacggctgcttccagg	9	14	1	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	12	124111642	124111642	G	C	SNP	EIF2B1	ENST00000424014	human	ensembl	69_37n	-1	known	missense	c.431	p.A144G	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361	29	0	0	26	8	23.53	-	-	-	C	124111642	G	C	124111642	3	2	667	1	0	0	0	0	1	0	0	0	5035	1203	42	4	506	4	EIF2B1	12	124111642	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	79328519	124111642	9740253	28	57551										
GPC5	0	genome.wustl.edu	37	chr13	92345527	92345527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggaacatggccttggaggctGctgcttcggttcaggagttc	15	9	1	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	13	92345527	92345527	G	T	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.412	p.A138S	0.996	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	70	0	0	36	4	10	-	-	-	T	92345527	G	T	92345527	3	4	667	1	0	0	0	0	1	0	0	0	6651	1319	46	4	422	4	GPC5	13	92345527	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		92345527	22824351	29	57552										
NFATC4	0	genome.wustl.edu	37	chr14	24846879	24846879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gccgagacctgagtggcttcCctgcacctcctggagaagag	13	13	0	4			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	14	24846879	24846879	C	T	SNP	NFATC4	ENST00000556279	human	ensembl	69_37n	1	known	missense	c.2773	p.P925S	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	36	0	0	17	11	39.29	-	-	-	T	24846879	C	T	24846879	3	4	667	1	0	0	0	0	1	0	0	0	10437	623	22	4	2973	4	NFATC4	14	24846879	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		24846879	82502661	30	57553										
ATL1	0	genome.wustl.edu	37	chr14	51057793	51057793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	aataaacctgatggtaaaaaGgtatgatgctaacttcctaa	7	6	0	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	14	51057793	51057793	G	T	SNP	ATL1	ENST00000357032	human	ensembl	69_37n	1	known	missense	c.417	p.K139N	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513	30	0	0	28	4	12.5	-	-	-	T	51057793	G	T	51057793	3	4	667	1	0	0	0	0	1	0	0	0	1110	1014	35	4	427	4	ATL1	14	51057793	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	26210914	51057793	56291747	31	57554										
ACOT2	0	genome.wustl.edu	37	chr14	74042189	74042189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ccacaaacacttgggtggccAcgaggggacaatcccatcaa	10	13	1	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	14	74042189	74042189	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	1	known	missense	c.1424	p.H475R	0.000	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	9	0	0	8	7	46.67	-	-	-	G	74042189	A	G	74042189	3	3	667	1	0	0	0	0	1	0	0	0	152	159	6	5	1434	5	ACOT2	14	74042189	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	22984396	74042189	33307351	32	57555										
THBS1	0	genome.wustl.edu	37	chr15	39874617	39874619	+	In_Frame_Del	DEL	GAA	GAA	-													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ctggcatccctgaggcagatGaagaagacccggggcacgct							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	15	39874617	39874619	GAA	-	DEL	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	in_frame_del	c.291_293	p.K99in_frame_del	1.000:1.000:1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	25	0	0	23	10	30.3	-	-	-	-	39874619	GAA	-	39874617	7	5	667	1	0	1	0	1	0	0	0	0	15948	1290	45	0	297	0	THBS1	15	39874617	In_Frame_Del	DEL	GAA	TCGA-C8-A3M8-01A-11D-A20S-09		39874617	62656775	33	57556										
PKD1	0	genome.wustl.edu	37	chr16	2142112	2142112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gtgaggactctcccagccaaCgtcgtaatcgctggtgctga	12	12	1	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	16	2142112	2142112	C	T	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.11347	p.V3783I	0.028	pfam_PKD1_2_channel	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	33	0	0	27	11	28.95	-	-	-	T	2142112	C	T	2142112	3	4	667	1	0	0	0	0	1	0	0	0	12037	536	19	1	1592	1	PKD1	16	2142112	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		2142112	88212641	34	57557										
SLC12A4	0	genome.wustl.edu	37	chr16	67979749	67979749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tcatcagcgtccgctcgtagGtgtatgcagagatgtcactg	12	10	3	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	16	67979749	67979749	G	T	SNP	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	missense	c.2771	p.T924N	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	44	0	0	41	13	23.64	-	-	-	T	67979749	G	T	67979749	3	4	667	1	0	0	0	0	1	0	0	0	14474	1261	44	4	508	4	SLC12A4	16	67979749	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	65837637	67979749	22375004	35	57558										
KIAA0195	0	genome.wustl.edu	37	chr17	73487872	73487872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcctggcgaggctcccaagcCccccgagccctattcacacc	9	20	1	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	17	73487872	73487872	C	T	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.1487	p.P496L	0.418	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	40	0	0	37	10	21.28	-	-	-	T	73487872	C	T	73487872	3	4	667	1	0	0	0	0	1	0	0	0	8212	623	22	4	1537	4	KIAA0195	17	73487872	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		73487872	7707338	36	57559										
USP36	0	genome.wustl.edu	37	chr17	76794540	76794540	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gctggcagcctttgctgggtGagtcacagaccagaagttcc	13	11	1	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	17	76794540	76794540	G	A	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	missense	c.3334	p.H1112Y	0.991	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	34	0	0	50	10	16.67	-	-	-	A	76794540	G	A	76794540	3	1	667	1	0	0	0	0	1	0	0	0	17164	1290	45	2	41	2	USP36	17	76794540	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	3306668	76794540	4400670	37	57560										
ACTG1	0	genome.wustl.edu	37	chr17	79479050	79479050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggtgccagatcttctccatgTcgtcccagttggtgacgatg	12	11	2	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	17	79479050	79479050	T	C	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.242	p.D81G	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	37	0	0	60	16	21.05	-	-	-	C	79479050	T	C	79479050	3	2	667	1	0	0	0	0	1	0	0	0	196	1667	58	5	901	5	ACTG1	17	79479050	Missense_Mutation	SNP	T	TCGA-C8-A3M8-01A-11D-A20S-09	2684510	79479050	1716160	38	57561										
NOL4	0	genome.wustl.edu	37	chr18	31685119	31685120	+	Frame_Shift_Del	DEL	TG	TG	-													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggtaggaaggcatagctctcTgaaatctgaaatgattcaca							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	18	31685119	31685120	TG	-	DEL	NOL4	ENST00000261592	human	ensembl	69_37n	-1	known	frame_shift_del	c.420_419	p.S140fs	1.000:1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746	26	0	0	20	7	25	-	-	-	-	31685120	TG	-	31685119	7	5	667	1	0	1	0	1	0	0	0	0	10596	1567	55	0	1532	0	NOL4	18	31685119	Frame_Shift_Del	DEL	TG	TCGA-C8-A3M8-01A-11D-A20S-09		31685119	46392129	39	57562										
DNMT1	0	genome.wustl.edu	37	chr19	10252733	10252733	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gtagaagcggttggggccgcCcatggagtacacctggacgc	16	11	0	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	19	10252733	10252733	C	A	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.3280	p.G1094C	0.313	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	30	0	0	20	8	28.57	-	-	-	A	10252733	C	A	10252733	3	1	667	1	0	0	0	0	1	0	0	0	4710	623	22	4	1666	4	DNMT1	19	10252733	Missense_Mutation	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09		10252733	48876250	40	57563										
DNM2	0	genome.wustl.edu	37	chr19	10935731	10935731	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcacctcccctcccgcttgcAggcagaaaacgaggatgggg	13	14	0	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	19	10935731	10935731	A	T	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	splice_site	c.1894-2	e18-2	1.000	-	-	-	no_errors	DNM2	HGNC	ENSG00000079805	28	0	0	30	11	26.83	-	-	-	T	10935731	A	T	10935731	5	4	667	1	0	0	0	0	0	0	1	0	4707	202	7	5	2105	5	DNM2	19	10935731	Splice_Site	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	682998	10935731	48193252	41	57564										
FUZ	0	genome.wustl.edu	37	chr19	50315565	50315565	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ctcagctcagagatgcccacCtcagatgacagaacaatgag	9	12	3	5			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	19	50315565	50315565	C	T	SNP	FUZ	ENST00000313777	human	ensembl	69_37n	-1	known	silent	c.261	p.E87	0.996	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361	27	0	0	20	3	13.04	-	-	-	T	50315565	C	T	50315565	2	4	667	1	0	0	0	0	0	0	0	1	6161	680	24	4		4	FUZ	19	50315565	Silent	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	39379834	50315565	8813418	42	57565										
ATF5	0	genome.wustl.edu	37	chr19	50436280	50436280	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcagagtccgtggagcgcgaGatccagtacgtcaaggacct	14	11	1	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	19	50436280	50436280	G	C	SNP	ATF5	ENST00000423777	human	ensembl	69_37n	1	known	missense	c.780	p.E260D	1.000	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF5	HGNC	ENSG00000169136	46	0	0	42	14	25	-	-	-	C	50436280	G	C	50436280	3	2	667	1	0	0	0	0	1	0	0	0	1087	933	33	2	786	2	ATF5	19	50436280	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	120715	50436280	8692703	43	57566										
ACSS2	0	genome.wustl.edu	37	chr20	33462890	33462890	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gaatccttcctgccttgacaGccagtctgtgaaatgatggt	10	10	1	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	20	33462890	33462890	G	A	SNP	ACSS2	ENST00000461051	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ACSS2	HGNC	ENSG00000131069	34	0	0	31	15	32.61	-	-	-	A	33462890	G	A	33462890	1	1	667	0	1	0	0	0	0	0	0	0	189	986	34	4		4	ACSS2	20	33462890	RNA	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		33462890	29562630	44	57567										
RBM39	0	genome.wustl.edu	37	chr20	34297186	34297187	+	Frame_Shift_Del	DEL	AA	AA	-													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	cttgtttgcaaatctataacAaaagagaattctacagctca							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	20	34297186	34297187	AA	-	DEL	RBM39	ENST00000253363	human	ensembl	69_37n	-1	known	frame_shift_del	c.1185_1184	p.F395fs	1.000:1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051	15	0	0	32	11	25.58	-	-	-	-	34297187	AA	-	34297186	7	5	667	1	0	1	0	1	0	0	0	0	13216	127	5	0	427	0	RBM39	20	34297186	Frame_Shift_Del	DEL	AA	TCGA-C8-A3M8-01A-11D-A20S-09	834296	34297186	28728334	45	57568										
ZNF295	0	genome.wustl.edu	37	chr21	43414183	43414183	+	Frame_Shift_Del	DEL	T	T	-													0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	aatggcgtgtgcagggttgaTgtaatgcagtaatccctcca							TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	21	43414183	43414183	T	-	DEL	ZNF295	ENST00000310826	human	ensembl	69_37n	-1	known	frame_shift_del	c.22	p.I8fs	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF295	HGNC	ENSG00000173276	35	0	0	28	17	37.78	-	-	-	-	43414183	T	-	43414183	7	5	667	1	0	1	0	1	0	0	0	0	17923	1464	51	0	3182	0	ZNF295	21	43414183	Frame_Shift_Del	DEL	T	TCGA-C8-A3M8-01A-11D-A20S-09		43414183	4715712	46	57569										
DIP2A	0	genome.wustl.edu	37	chr21	47966833	47966833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	caccctttccctcaggacaaCctggtcttcatcgtgggcaa	8	15	3	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	21	47966833	47966833	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	silent	c.2403	p.N801	0.569	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	36	0	0	24	7	22.58	-	-	-	T	47966833	C	T	47966833	2	4	667	1	0	0	0	0	0	0	0	1	4563	506	18	4		4	DIP2A	21	47966833	Silent	SNP	C	TCGA-C8-A3M8-01A-11D-A20S-09	4552650	47966833	163062	47	57570										
SGSM1	0	genome.wustl.edu	37	chr22	25264385	25264385	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	attggtcagccaggacgggaTccagaggccgcccttccgct	13	14	1	1			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	22	25264385	25264385	T	C	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.1037	p.I346T	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	33	0	0	25	15	37.5	-	-	-	C	25264385	T	C	25264385	3	2	667	1	0	0	0	0	1	0	0	0	14310	1435	50	5	1079	5	SGSM1	22	25264385	Missense_Mutation	SNP	T	TCGA-C8-A3M8-01A-11D-A20S-09		25264385	26040181	48	57571										
RBM10	0	genome.wustl.edu	37	chrX	47028833	47028833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	ggactaccgttcatatcctcGcgagtatggcagccaggagg	13	11	1	0			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	X	47028833	47028833	G	A	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	missense	c.137	p.R46H	0.991	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	73	0	0	43	30	41.1	-	-	-	A	47028833	G	A	47028833	3	1	667	1	0	0	0	0	1	0	0	0	13194	1087	38	1	143	1	RBM10	23	47028833	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09		47028833	108241727	49	57572										
PAGE5	0	genome.wustl.edu	37	chrX	55248225	55248225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	gcagcccactgaggaaaaacGtcaagaagaggaaccaccaa	10	11	1	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	X	55248225	55248225	G	C	SNP	PAGE5	ENST00000289619	human	ensembl	69_37n	1	known	missense	c.167	p.R56P	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE5	HGNC	ENSG00000158639	42	0	0	53	13	19.7	-	-	-	C	55248225	G	C	55248225	3	2	667	1	0	0	0	0	1	0	0	0	11466	1145	40	3	177	3	PAGE5	23	55248225	Missense_Mutation	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	8219392	55248225	100022335	50	57573										
TBC1D8B	0	genome.wustl.edu	37	chrX	106093309	106093309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	tatcagggatcaccttcctcAgctgacagaacacatgactg	8	12	3	3			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	X	106093309	106093309	A	G	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.1892	p.Q631R	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	61	0	0	48	12	20	-	-	-	G	106093309	A	G	106093309	3	3	667	1	0	0	0	0	1	0	0	0	15721	188	7	5	2004	5	TBC1D8B	23	106093309	Missense_Mutation	SNP	A	TCGA-C8-A3M8-01A-11D-A20S-09	50845084	106093309	49177251	51	57574										
GAB3	0	genome.wustl.edu	37	chrX	153940823	153940823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.176470588235294	9	0.0504324002411103	2.36190476190476	3.02808302808303	1.85247432306256	1	1	0	agggcagcctgaggcctcgaGgatggcacctcctgagctcc	14	14	0	2			TCGA-C8-A3M8-01A-11D-A20S-09	TCGA-C8-A3M8-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ceb3f6f-e531-4f02-ac2b-67e0c1a58918	dd4257ed-800d-4c1d-99db-37991e1b12c8	X	153940823	153940823	G	A	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	silent	c.750	p.S250	0.145	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	15	0	0	14	6	30	-	-	-	A	153940823	G	A	153940823	2	1	667	1	0	0	0	0	0	0	0	1	6199	987	35	4		4	GAB3	23	153940823	Silent	SNP	G	TCGA-C8-A3M8-01A-11D-A20S-09	47847514	153940823	1329737	52	57575										
KIF1B	0	genome.wustl.edu	37	chr1	10397180	10397180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gttctggtctgtccttggagGagttgaggattgtggaagga	17	4	2	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	10397180	10397180	G	A	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	missense	c.3040	p.E1014K	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	177	0	0	26	119	82.07	-	-	-	A	10397180	G	A	10397180	3	1	668	1	0	0	0	0	1	0	0	0	8336	1175	41	2	4635	2	KIF1B	1	10397180	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		10397180	238853441	1	57576										
COL16A1	0	genome.wustl.edu	37	chr1	32122636	32122636	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	agaccagtacaactgtacctCtttgccagctgcaccatccg	7	15	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	32122636	32122636	C	T	SNP	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	missense	c.4054	p.E1352K	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	150	0	0	93	70	42.94	-	-	-	T	32122636	C	T	32122636	3	4	668	1	0	0	0	0	1	0	0	0	3703	922	32	2	788	2	COL16A1	1	32122636	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	21725456	32122636	217127985	2	57577										
MED8	0	genome.wustl.edu	37	chr1	43852271	43852271	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ccatcatacctccactctctGattctcgctcctctttgctg	4	17	4	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	43852271	43852271	G	C	SNP	MED8	ENST00000290663	human	ensembl	69_37n	-1	known	nonsense	c.482	p.S161*	1.000	pfam_Mediatior_Med8_fun/met	pfam_Mediatior_Med8_fun/met	-	no_errors	MED8	HGNC	ENSG00000159479	598	0	0	323	199	38.12	-	-	-	C	43852271	G	C	43852271	4	2	668	1	0	0	0	0	0	1	0	0	9524	1294	45	2	443	2	MED8	1	43852271	Nonsense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	11729635	43852271	205398350	3	57578										
SSX2IP	0	genome.wustl.edu	37	chr1	85136470	85136470	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gatggagacatctttgtttcTgaggtatattgagagatagt	12	3	2	4			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	85136470	85136470	T	C	SNP	SSX2IP	ENST00000342203	human	ensembl	69_37n	-1	known	silent	c.72	p.S24	1.000	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155	61	0	0	28	45	61.64	-	-	-	C	85136470	T	C	85136470	2	2	668	1	0	0	0	0	0	0	0	1	15295	1567	55	5		5	SSX2IP	1	85136470	Silent	SNP	T	TCGA-D8-A13Y-01A-11D-A10Y-09	41284199	85136470	164114151	4	57579										
C1orf43	0	genome.wustl.edu	37	chr1	154185071	154185071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	cttgcccattaaggaacgggGatgccggccttcagaatgaa	12	10	1	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	154185071	154185071	G	A	SNP	C1orf43	ENST00000368521	human	ensembl	69_37n	-1	known	missense	c.370	p.P124S	1.000	pfam_NICE-3_prd	pfam_NICE-3_prd	-	no_errors	C1orf43	HGNC	ENSG00000143612	77	0	0	45	35	43.75	-	-	-	A	154185071	G	A	154185071	3	1	668	1	0	0	0	0	1	0	0	0	2060	1174	41	2	403	2	C1orf43	1	154185071	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	69048601	154185071	95065550	5	57580										
ASH1L	0	genome.wustl.edu	37	chr1	155451186	155451186	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ttccttcattaaacatttctTtctccaaattaatgatttct	1	9	4	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	155451186	155451186	T	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1475	p.K492T	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	168	0	0	127	32	20	-	-	-	G	155451186	T	G	155451186	3	3	668	1	0	0	0	0	1	0	0	0	1045	1841	64	5	7523	5	ASH1L	1	155451186	Missense_Mutation	SNP	T	TCGA-D8-A13Y-01A-11D-A10Y-09	1266115	155451186	93799435	6	57581										
PREPL	0	genome.wustl.edu	37	chr2	44565657	44565657	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	attcataattgcaggggtatCagccgctgttctcattagct	9	9	3	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	44565657	44565657	C	G	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	missense	c.988	p.D330H	0.672	pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	111	0	0	66	57	46.34	-	-	-	G	44565657	C	G	44565657	3	3	668	1	0	0	0	0	1	0	0	0	12556	826	29	2	1227	2	PREPL	2	44565657	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09		44565657	198633716	7	57582										
ALPP	0	genome.wustl.edu	37	chr2	233244601	233244601	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gcctccgcccgccaggagggGtgccaggacatcgctacgca	14	16	0	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	233244601	233244601	G	T	SNP	ALPP	ENST00000392027	human	ensembl	69_37n	1	known	silent	c.612	p.G204	0.999	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283	29	0	0	50	12	19.35	-	-	-	T	233244601	G	T	233244601	2	4	668	1	0	0	0	0	0	0	0	1	548	1248	44	4		4	ALPP	2	233244601	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	188678944	233244601	9954772	8	57583										
TSEN2	0	genome.wustl.edu	37	chr3	12558155	12558155	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gatgtttaagtatttactatGagaaggtaagatgctttgtt	10	2	0	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	3	12558155	12558155	G	C	SNP	TSEN2	ENST00000284995	human	ensembl	69_37n	1	known	missense	c.955	p.E319Q	0.997	pfam_tRNA_intron_Endonuc_N,pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743	247	0	0	216	102	32.08	-	-	-	C	12558155	G	C	12558155	3	2	668	1	0	0	0	0	1	0	0	0	16708	1291	45	2	977	2	TSEN2	3	12558155	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		12558155	185464275	9	57584										
HGD	0	genome.wustl.edu	37	chr3	120394696	120394696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tctgaagaacactcattcccAaatccagaaatgtactgtag	6	10	2	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	3	120394696	120394696	A	C	SNP	HGD	ENST00000283871	human	ensembl	69_37n	-1	known	missense	c.30	p.F10L	0.998	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924	88	0	0	48	47	49.47	-	-	-	C	120394696	A	C	120394696	3	2	668	1	0	0	0	0	1	0	0	0	7135	127	5	5	1359	5	HGD	3	120394696	Missense_Mutation	SNP	A	TCGA-D8-A13Y-01A-11D-A10Y-09	107836541	120394696	77627734	10	57585										
MMRN1	0	genome.wustl.edu	37	chr4	90856574	90856574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aacaatctcaccgtctctttGgagatggagaaagagtctct	9	9	3	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	4	90856574	90856574	G	A	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	silent	c.1743	p.L581	0.663	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	56	0	0	6	17	73.91	-	-	-	A	90856574	G	A	90856574	2	1	668	1	0	0	0	0	0	0	0	1	9742	1339	47	4		4	MMRN1	4	90856574	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		90856574	100297702	11	57586										
SLC12A7	0	genome.wustl.edu	37	chr5	1075597	1075597	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	acaggctcatacccagaaagGacagggtcctgggggcgggg	17	10	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	1075597	1075597	G	C	SNP	SLC12A7	ENST00000264930	human	ensembl	69_37n	-1	known	missense	c.1856	p.S619C	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504	39	0	0	67	25	27.17	-	-	-	C	1075597	G	C	1075597	3	2	668	1	0	0	0	0	1	0	0	0	14477	1174	41	2	1435	2	SLC12A7	5	1075597	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		1075597	179839663	12	57587										
FAM105B	0	genome.wustl.edu	37	chr5	14687728	14687728	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gacctggttgataaaattaaAgagtcccttactctgctgag	9	8	1	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	14687728	14687728	A	G	SNP	FAM105B	ENST00000284274	human	ensembl	69_37n	1	known	silent	c.567	p.K189	0.998	prints_FAM105A	prints_FAM105,prints_FAM105B,prints_FAM105A	-	no_errors	FAM105B	HGNC	ENSG00000154124	126	0	0	121	60	32.97	-	-	-	G	14687728	A	G	14687728	2	3	668	1	0	0	0	0	0	0	0	1	5428	69	3	5		5	FAM105B	5	14687728	Silent	SNP	A	TCGA-D8-A13Y-01A-11D-A10Y-09	13612131	14687728	166227532	13	57588										
ELL2	0	genome.wustl.edu	37	chr5	95226942	95226942	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ttgaagtcatccttataattCtggcgttgctcataggagac	9	8	3	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	95226942	95226942	C	G	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.1626	p.Q542H	1.000	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	206	0	0	189	23	10.85	-	-	-	G	95226942	C	G	95226942	3	3	668	1	0	0	0	0	1	0	0	0	5100	912	32	2	308	2	ELL2	5	95226942	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	80539214	95226942	85688318	14	57589										
SLCO4C1	0	genome.wustl.edu	37	chr5	101631639	101631639	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gacggccaagaggcagtagtGaagcagaaagcctccaggtg	15	9	0	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	101631639	101631639	G	A	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	missense	c.328	p.H110Y	0.063	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	81	0	0	48	41	46.07	-	-	-	A	101631639	G	A	101631639	3	1	668	1	0	0	0	0	1	0	0	0	14819	1290	45	2	1898	2	SLCO4C1	5	101631639	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	6404697	101631639	79283621	15	57590										
PCDHA2	0	genome.wustl.edu	37	chr5	140176671	140176671	+	Missense_Mutation	SNP	T	T	A													0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tcatcgccatctgcgcggtaTccagcctgttggtgctcacg							TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	140176671	140176671	T	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.2122	p.S708T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	32	0	0	61	43	41.35	-	-	-	A	140176671	T	A	140176671	3	1	668	1	0	0	0	0	1	0	0	0	11597	1435	50	5	2124	5	PCDHA2	5	140176671	Missense_Mutation	SNP	T	TCGA-D8-A13Y-01A-11D-A10Y-09	38545032	140176671	40738589	16	57591	445	2								
PCDHA2	0	genome.wustl.edu	37	chr5	140176672	140176672	+	Missense_Mutation	SNP	C	C	A													0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	catcgccatctgcgcggtatCcagcctgttggtgctcacgg							TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	140176672	140176672	C	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.2123	p.S708Y	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	32	0	0	61	43	41.35	-	-	-	A	140176672	C	A	140176672	3	1	668	1	0	0	0	0	1	0	0	0	11597	855	30	2	2125	2	PCDHA2	5	140176672	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	1	140176672	40738588	17	57592	445	2								
PCDHA5	0	genome.wustl.edu	37	chr5	140203381	140203381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gctggtggaaagtggccaggCgccgaaggcctcatcgcggg	18	11	1	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	140203381	140203381	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.2021	p.A674V	0.008	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	30	0	0	55	38	40.86	-	-	-	T	140203381	C	T	140203381	3	4	668	1	0	0	0	0	1	0	0	0	11600	768	27	1	2023	1	PCDHA5	5	140203381	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	26709	140203381	40711879	18	57593										
ATP10B	0	genome.wustl.edu	37	chr5	160047807	160047807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	atccgagtctgtggtggccaCgttggcccctaagctctccc	11	15	2	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	160047807	160047807	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1963	p.V655M	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	42	0	0	47	38	44.71	-	-	-	T	160047807	C	T	160047807	3	4	668	1	0	0	0	0	1	0	0	0	1121	536	19	1	2470	1	ATP10B	5	160047807	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	19844426	160047807	20867453	19	57594										
TTK	0	genome.wustl.edu	37	chr6	80746293	80746293	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	accaaatgcaaccagatacaAcaagtgttgttaaagattct	6	8	1	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	6	80746293	80746293	A	G	SNP	TTK	ENST00000369798	human	ensembl	69_37n	1	known	missense	c.2026	p.T676A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTK	HGNC	ENSG00000112742	199	1	0.5	100	72	41.86	-	-	-	G	80746293	A	G	80746293	3	3	668	1	0	0	0	0	1	0	0	0	16817	43	2	5	2088	5	TTK	6	80746293	Missense_Mutation	SNP	A	TCGA-D8-A13Y-01A-11D-A10Y-09		80746293	90368774	20	57595										
DSE	0	genome.wustl.edu	37	chr6	116757537	116757537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	cctttgcctcagtgacatatCctcggggctatccctacaat	7	14	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	6	116757537	116757537	C	T	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.1963	p.P655S	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	139	0	0	26	80	75.47	-	-	-	T	116757537	C	T	116757537	3	4	668	1	0	0	0	0	1	0	0	0	4809	855	30	2	1924	2	DSE	6	116757537	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	36011244	116757537	54357530	21	57596										
TRMT11	0	genome.wustl.edu	37	chr6	126333930	126333930	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tgtctagctccatatggtatCagagaatctacaagaagaac	8	8	3	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	6	126333930	126333930	C	T	SNP	TRMT11	ENST00000453993	human	ensembl	69_37n	1	known	nonsense	c.334	p.Q112*	1.000	pfam_RNA_methylase_dom,pfam_DNA_methylase_A-5,prints_N12N6_MeTrfase	pfam_RNA_methylase_dom,pfam_DNA_methylase_A-5,prints_N12N6_MeTrfase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRMT11	HGNC	ENSG00000066651	188	0	0	275	82	22.97	-	-	-	T	126333930	C	T	126333930	4	4	668	1	0	0	0	0	0	1	0	0	16658	816	29	2	977	2	TRMT11	6	126333930	Nonsense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	9576393	126333930	44781137	22	57597										
PHF14	0	genome.wustl.edu	37	chr7	11022484	11022484	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	attttgtgtccatggaagagCtgaatgacatggatgactat	11	5	0	4			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	11022484	11022484	C	T	SNP	PHF14	ENST00000403050	human	ensembl	69_37n	1	known	silent	c.598	p.L200	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443	147	1	0.68	113	80	41.45	-	-	-	T	11022484	C	T	11022484	2	4	668	1	0	0	0	0	0	0	0	1	11899	796	28	4		4	PHF14	7	11022484	Silent	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09		11022484	148116179	23	57598										
PLOD3	0	genome.wustl.edu	37	chr7	100861229	100861229	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ttcttgtaagaacaccgtgaCcacatctttaaaatgaccca	5	11	2	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	100861229	100861229	C	G	SNP	PLOD3	ENST00000414785	human	ensembl	69_37n	-1	putative	missense	c.22	p.V8L	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	16	0	0	16	26	61.9	-	-	-	G	100861229	C	G	100861229	3	3	668	1	0	0	0	0	1	0	0	0	12177	522	18	4		4	PLOD3	7	100861229	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	89838745	100861229	58277434	24	57599										
RELN	0	genome.wustl.edu	37	chr7	103214731	103214731	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gattggggacatttgacacaCaggttccttgtgcagcttca	11	9	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	103214731	103214731	C	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4319	p.C1440F	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	89	0	0	52	49	48.51	-	-	-	A	103214731	C	A	103214731	3	1	668	1	0	0	0	0	1	0	0	0	13303	478	17	4	6207	4	RELN	7	103214731	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	2353502	103214731	55923932	25	57600										
NOBOX	0	genome.wustl.edu	37	chr7	144097327	144097327	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gctggggggtcacccccaccGtctgggcaatctctcggcgt	14	15	3	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	144097327	144097327	G	A	SNP	NOBOX	ENST00000467773	human	ensembl	69_37n	-1	known	missense	c.923	p.T308M	0.016	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	NOBOX	HGNC	ENSG00000106410	124	0	0	79	66	45.52	-	-	-	A	144097327	G	A	144097327	3	1	668	1	0	0	0	0	1	0	0	0	10584	1145	40	1	1080	1	NOBOX	7	144097327	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	40882596	144097327	15041336	26	57601										
MMP16	0	genome.wustl.edu	37	chr8	89130939	89130939	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	agtaacctaccatatatcttCtggatgccctgtaaatcatc	5	11	3	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	89130939	89130939	C	T	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	silent	c.861	p.Q287	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	125	0	0	93	72	43.64	-	-	-	T	89130939	C	T	89130939	2	4	668	1	0	0	0	0	0	0	0	1	9726	912	32	2		2	MMP16	8	89130939	Silent	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09		89130939	57233083	27	57602										
SLC25A32	0	genome.wustl.edu	37	chr8	104412655	104412655	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gagcttactttctcttttctCtaaggtcaagtaaaaaatgt	6	7	3	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	104412655	104412655	C	T	SNP	SLC25A32	ENST00000297578	human	ensembl	69_37n	-1	known	missense	c.932	p.R311K	0.998	prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A32	HGNC	ENSG00000164933	112	0	0	59	48	44.86	-	-	-	T	104412655	C	T	104412655	3	4	668	1	0	0	0	0	1	0	0	0	14585	913	32	2	19	2	SLC25A32	8	104412655	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	15281716	104412655	41951367	28	57603										
KCNQ3	0	genome.wustl.edu	37	chr8	133186503	133186503	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	taccgctggaagggcaaaaaAggagacgccaattaaggaaa	12	7	0	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	133186503	133186503	A	T	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.1027	p.F343I	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	88	0	0	119	52	30.41	-	-	-	T	133186503	A	T	133186503	3	4	668	1	0	0	0	0	1	0	0	0	8138	72	3	5	1631	5	KCNQ3	8	133186503	Missense_Mutation	SNP	A	TCGA-D8-A13Y-01A-11D-A10Y-09	28773848	133186503	13177519	29	57604										
PLEC	0	genome.wustl.edu	37	chr8	144997236	144997236	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	cgcagtcgcgcagcctcttgGgccgccacactcagccgcgc	12	19	2	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	144997236	144997236	G	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.7272	p.A2424	0.959	superfamily_Chorismate_mutase_type_II	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	14	0	0	25	10	28.57	-	-	-	A	144997236	G	A	144997236	2	1	668	1	0	0	0	0	0	0	0	1	12126	1219	43	4		4	PLEC	8	144997236	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	11810733	144997236	1366786	30	57605										
RFX3	0	genome.wustl.edu	37	chr9	3293227	3293227	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tgggaaggctcactccttctGctgtctcataattgtccaac	8	12	3	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	3293227	3293227	G	C	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	missense	c.581	p.A194G	1.000	pfam_DNA-bd_RFX	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	145	0	0	13	101	88.6	-	-	-	C	3293227	G	C	3293227	3	2	668	1	0	0	0	0	1	0	0	0	13347	1319	46	4	1872	4	RFX3	9	3293227	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		3293227	137920204	31	57606										
VPS13A	0	genome.wustl.edu	37	chr9	79827929	79827929	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tgtttacatgatgaaactgaGaaactggttcgtaaggtaaa	10	4	0	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	79827929	79827929	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.600	p.E200D	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	363	0	0	218	156	41.71	-	-	-	C	79827929	G	C	79827929	3	2	668	1	0	0	0	0	1	0	0	0	17286	933	33	2	630	2	VPS13A	9	79827929	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	76534702	79827929	61385502	32	57607										
AMBP	0	genome.wustl.edu	37	chr9	116840414	116840414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctgcacttggatgttgtcggGcggcgttggcacagggccag	17	10	0	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	116840414	116840414	G	C	SNP	AMBP	ENST00000265132	human	ensembl	69_37n	-1	known	missense	c.76	p.P26A	0.001	superfamily_Calycin-like	pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin,pfscan_Prot_inh_Kunz-m	-	no_errors	AMBP	HGNC	ENSG00000106927	117	0	0	83	50	37.59	-	-	-	C	116840414	G	C	116840414	3	2	668	1	0	0	0	0	1	0	0	0	564	1203	42	4	1022	4	AMBP	9	116840414	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	37012485	116840414	24373017	33	57608										
CUBN	0	genome.wustl.edu	37	chr10	17126407	17126407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gaaaggcccagacaactcagGcaagaagagttcaccctctg	10	12	3	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	10	17126407	17126407	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.2164	p.P722S	0.998	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	116	0	0	66	56	45.9	-	-	-	A	17126407	G	A	17126407	3	1	668	1	0	0	0	0	1	0	0	0	4082	1203	42	4	8911	4	CUBN	10	17126407	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		17126407	118408340	34	57609										
ZNF488	0	genome.wustl.edu	37	chr10	48371106	48371106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctgcagatgccctgggggagCtgtctggactcctcaacact	12	13	2	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	10	48371106	48371106	C	A	SNP	ZNF488	ENST00000395702	human	ensembl	69_37n	1	known	missense	c.574	p.L192M	0.824	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF488	HGNC	ENSG00000165388	97	0	0	52	64	55.17	-	-	-	A	48371106	C	A	48371106	3	1	668	1	0	0	0	0	1	0	0	0	18036	796	28	4	576	4	ZNF488	10	48371106	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	31244699	48371106	87163641	35	57610										
OR52H1	0	genome.wustl.edu	37	chr11	5566050	5566050	+	Frame_Shift_Del	DEL	C	C	-													0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aggcatcttgggagggaaggCcaaagacagcacagaggatg							TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	5566050	5566050	C	-	DEL	OR52H1	ENST00000322653	human	ensembl	69_37n	-1	known	frame_shift_del	c.704	p.G235fs	0.137	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52H1	HGNC	ENSG00000181616	134	0	0	20	74	77.08	-	-	-	-	5566050	C	-	5566050	7	5	668	1	0	1	0	1	0	0	0	0	11192	739	26	0	261	0	OR52H1	11	5566050	Frame_Shift_Del	DEL	C	TCGA-D8-A13Y-01A-11D-A10Y-09		5566050	129440466	36	57611										
FNBP4	0	genome.wustl.edu	37	chr11	47753007	47753007	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctgtttggcaagagtctcatCtctattttcttgtgcttggc	9	9	3	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	47753007	47753007	C	T	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.1927	p.D643N	0.997	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	245	0	0	115	80	41.03	-	-	-	T	47753007	C	T	47753007	3	4	668	1	0	0	0	0	1	0	0	0	6013	913	32	2	1150	2	FNBP4	11	47753007	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	42186957	47753007	87253509	37	57612										
TRIM48	0	genome.wustl.edu	37	chr11	55032759	55032759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gcaccggtatcacagacactGtcccgctgagtgggctgctg	13	13	1	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	55032759	55032759	G	A	SNP	TRIM48	ENST00000417545	human	ensembl	69_37n	1	known	missense	c.428	p.C143Y	0.981	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244	95	0	0	87	71	44.94	-	-	-	A	55032759	G	A	55032759	3	1	668	1	0	0	0	0	1	0	0	0	16619	1377	48	4	434	4	TRIM48	11	55032759	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	7279752	55032759	79973757	38	57613										
OR5I1	0	genome.wustl.edu	37	chr11	55703513	55703513	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gatggcgacatagcgatcatAggccatggcggccaggatga	15	9	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	55703513	55703513	A	T	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.364	p.Y122N	0.638	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	52	0	0	66	9	12	-	-	-	T	55703513	A	T	55703513	3	4	668	1	0	0	0	0	1	0	0	0	11237	420	15	5	583	5	OR5I1	11	55703513	Missense_Mutation	SNP	A	TCGA-D8-A13Y-01A-11D-A10Y-09	670754	55703513	79303003	39	57614										
STX5	0	genome.wustl.edu	37	chr11	62595056	62595056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gccatgagggtgaattcactGcgttgtcggacagcacgcaa	13	10	1	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	62595056	62595056	G	A	SNP	STX5	ENST00000294179	human	ensembl	69_37n	-1	known	silent	c.273	p.R91	1.000	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX5	HGNC	ENSG00000162236	116	0	0	107	75	41.21	-	-	-	A	62595056	G	A	62595056	2	1	668	1	0	0	0	0	0	0	0	1	15439	1306	46	4		4	STX5	11	62595056	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	6891543	62595056	72411460	40	57615										
MAP3K11	0	genome.wustl.edu	37	chr11	65374961	65374961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tcgcgcgccgctcgcgtcagCtcctcctcgcggctcagtag	12	18	2	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	65374961	65374961	C	T	SNP	MAP3K11	ENST00000524848	human	ensembl	69_37n	-1	known	missense	c.385	p.A129T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon	MAP3K11	HGNC	ENSG00000173327	10	0	0	15	13	46.43	-	-	-	T	65374961	C	T	65374961	3	4	668	1	0	0	0	0	1	0	0	0	9316	796	28	4	1298	4	MAP3K11	11	65374961	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	2779905	65374961	69631555	41	57616										
HMBS	0	genome.wustl.edu	37	chr11	118963868	118963868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	agttggtaggcatcactgctCgtaacattccacgagggccc	11	12	1	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	118963868	118963868	C	T	SNP	HMBS	ENST00000278715	human	ensembl	69_37n	1	known	missense	c.961	p.R321C	0.029	superfamily_Porphobilinogen_deaminase_C,pirsf_4pyrrol_synth_OHMeBilane_synth	pfam_Porphobilin_deaminase_N,pfam_Porphobilinogen_deaminase_C,superfamily_Porphobilinogen_deaminase_C,pirsf_4pyrrol_synth_OHMeBilane_synth,prints_4pyrrol_synth_OHMeBilane_synth,tigrfam_4pyrrol_synth_OHMeBilane_synth	-	no_errors	HMBS	HGNC	ENSG00000256269	88	0	0	10	74	88.1	-	-	-	T	118963868	C	T	118963868	3	4	668	1	0	0	0	0	1	0	0	0	7270	884	31	1	1015	1	HMBS	11	118963868	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	53588907	118963868	16042648	42	57617										
APOLD1	0	genome.wustl.edu	37	chr12	12940449	12940449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ccaagattcagaaactggccGagagcctggagtcctgcacc	11	13	1	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	12940449	12940449	G	A	SNP	APOLD1	ENST00000326765	human	ensembl	69_37n	1	known	missense	c.703	p.E235K	0.997	NULL	pfam_ApoL	-	no_errors	APOLD1	HGNC	ENSG00000178878	37	0	0	37	30	44.78	-	-	-	A	12940449	G	A	12940449	3	1	668	1	0	0	0	0	1	0	0	0	813	1059	37	1	716	1	APOLD1	12	12940449	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		12940449	120911446	43	57618										
SOX5	0	genome.wustl.edu	37	chr12	23887621	23887621	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aaattatgatttctgacctgGatctgttgctggagcaaatt	9	6	2	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	23887621	23887621	G	A	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	silent	c.807	p.I269	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	275	0	0	106	97	47.78	-	-	-	A	23887621	G	A	23887621	2	1	668	1	0	0	0	0	0	0	0	1	15043	1164	41	2		2	SOX5	12	23887621	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	10947172	23887621	109964274	44	57619										
PAN2	0	genome.wustl.edu	37	chr12	56713711	56713711	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ccaatctgtggcatctcattCagcatcagtggaataaaggt	9	9	4	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	56713711	56713711	C	T	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	silent	c.2895	p.L965	1.000	superfamily_RNaseH-like_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	228	0	0	271	84	23.66	-	-	-	T	56713711	C	T	56713711	2	4	668	1	0	0	0	0	0	0	0	1	11487	813	29	2		2	PAN2	12	56713711	Silent	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	32826090	56713711	77138184	45	57620										
GPR12	0	genome.wustl.edu	37	chr13	27333003	27333003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctctctgggcgagactggacGggatgcagccgcagcaaatg	15	11	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	13	27333003	27333003	G	A	SNP	GPR12	ENST00000381436	human	ensembl	69_37n	-1	known	missense	c.962	p.P321L	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975	148	0	0	29	95	76.61	-	-	-	A	27333003	G	A	27333003	3	1	668	1	0	0	0	0	1	0	0	0	6685	1116	39	1	46	1	GPR12	13	27333003	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		27333003	87836875	46	57621										
TRPC4	0	genome.wustl.edu	37	chr13	38229311	38229311	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gacattgtatgtcccaaacaTggtggcaccaacaaactcag	8	11	1	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	13	38229311	38229311	T	A	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.1798	p.M600L	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	107	0	0	9	49	84.48	-	-	-	A	38229311	T	A	38229311	3	1	668	1	0	0	0	0	1	0	0	0	16676	1464	51	5	1170	5	TRPC4	13	38229311	Missense_Mutation	SNP	T	TCGA-D8-A13Y-01A-11D-A10Y-09	10896308	38229311	76940567	47	57622										
CLK3	0	genome.wustl.edu	37	chr15	74914837	74914837	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	atttcttttctctcctagatGagattgtggggaacctgggt	11	7	2	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	15	74914837	74914837	G	A	SNP	CLK3	ENST00000395066	human	ensembl	69_37n	1	known	missense	c.913	p.E305K	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK3	HGNC	ENSG00000179335	103	0	0	74	59	44.36	-	-	-	A	74914837	G	A	74914837	3	1	668	1	0	0	0	0	1	0	0	0	3568	1291	45	2	931	2	CLK3	15	74914837	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		74914837	27616555	48	57623										
IREB2	0	genome.wustl.edu	37	chr15	78786397	78786397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tcattttccatcaggacagaCggtgagaatgcaaacaaagt	9	8	2	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	15	78786397	78786397	C	T	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.2471	p.T824M	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	99	0	0	41	37	47.44	-	-	-	T	78786397	C	T	78786397	3	4	668	1	0	0	0	0	1	0	0	0	7880	550	19	1	2545	1	IREB2	15	78786397	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	3871560	78786397	23744995	49	57624										
POLG	0	genome.wustl.edu	37	chr15	89876861	89876861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gctgctgctgctgctgctgcCgccgccgctgcccgtcgctg	14	18	0	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	15	89876861	89876861	C	T	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.125	p.R42Q	0.003	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	10	0	0	28	8	21.62	-	-	-	T	89876861	C	T	89876861	3	4	668	1	0	0	0	0	1	0	0	0	12274	652	23	1	3682	1	POLG	15	89876861	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	11090464	89876861	12654531	50	57625										
MON1B	0	genome.wustl.edu	37	chr16	77227443	77227443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tctggagtcctgcagcccctGagaatagtcccacatgtagc	10	13	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	16	77227443	77227443	G	C	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	missense	c.244	p.E82Q	0.203	NULL	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	83	0	0	8	52	86.67	-	-	-	C	77227443	G	C	77227443	3	2	668	1	0	0	0	0	1	0	0	0	9771	1291	45	2	250	2	MON1B	16	77227443	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		77227443	13127310	51	57626										
C17orf107	0	genome.wustl.edu	37	chr17	4803317	4803317	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gagcagaggttcagagagctGaagtccctggagccacccga	14	11	1	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	4803317	4803317	G	A	SNP	C17orf107	ENST00000381365	human	ensembl	69_37n	1	known	silent	c.153	p.L51	0.006	NULL	NULL	-	no_errors	C17orf107	HGNC	ENSG00000205710	41	0	0	2	28	93.33	-	-	-	A	4803317	G	A	4803317	2	1	668	1	0	0	0	0	0	0	0	1	1866	1277	45	2		2	C17orf107	17	4803317	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		4803317	76391893	52	57627										
MYH1	0	genome.wustl.edu	37	chr17	10399833	10399833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	gttcaactcaagctggatgcGcaggatctttccctcttcat	8	12	5	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	10399833	10399833	G	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.4690	p.R1564C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	186	1	0.53	25	135	84.38	-	-	-	A	10399833	G	A	10399833	3	1	668	1	0	0	0	0	1	0	0	0	10101	1087	38	1	1157	1	MYH1	17	10399833	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	5596516	10399833	70795377	53	57628										
KIAA0100	0	genome.wustl.edu	37	chr17	26971123	26971123	+	Frame_Shift_Del	DEL	A	A	-													0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aagactgacattctggatccAaaaaaagcggaaggagccaa							TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	26971123	26971123	A	-	DEL	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	frame_shift_del	c.151	p.W51fs	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	76	0	0	33	4	10.81	-	-	-	-	26971123	A	-	26971123	7	5	668	1	0	1	0	1	0	0	0	0	8206	130	5	0	6708	0	KIAA0100	17	26971123	Frame_Shift_Del	DEL	A	TCGA-D8-A13Y-01A-11D-A10Y-09	16571290	26971123	54224087	54	57629										
TBKBP1	0	genome.wustl.edu	37	chr17	45785815	45785815	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aggagctgggccggcttcggGagttgagttccctacagggg	18	9	0	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	45785815	45785815	G	T	SNP	TBKBP1	ENST00000361722	human	ensembl	69_37n	1	known	nonsense	c.928	p.E310*	1.000	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933	158	0	0	12	82	86.32	-	-	-	T	45785815	G	T	45785815	4	4	668	1	0	0	0	0	0	1	0	0	15733	1175	41	2	954	2	TBKBP1	17	45785815	Nonsense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	18814692	45785815	35409395	55	57630										
ACE	0	genome.wustl.edu	37	chr17	61558968	61558968	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ttccgggtggcagaggagttCttcacctccctggagctctc	12	13	3	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	61558968	61558968	C	A	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.987	p.F329L	1.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	37	0	0	39	39	49.37	-	-	-	A	61558968	C	A	61558968	3	1	668	1	0	0	0	0	1	0	0	0	136	912	32	2	1013	2	ACE	17	61558968	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	15773153	61558968	19636242	56	57631										
DCC	0	genome.wustl.edu	37	chr18	50278518	50278518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aatgtcctcctcgactgctcCgcggagtccgaccgaggagt	12	14	0	0			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	18	50278518	50278518	C	T	SNP	DCC	ENST00000578080	human	ensembl	69_37n	1	putative	missense	c.89	p.P30L	0.874	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DCC	HGNC	ENSG00000187323	82	0	0	61	41	40.2	-	-	-	T	50278518	C	T	50278518	3	4	668	1	0	0	0	0	1	0	0	0	4313	639	23	1	192	1	DCC	18	50278518	Missense_Mutation	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09		50278518	27798730	57	57632										
CYB5A	0	genome.wustl.edu	37	chr18	71959066	71959066	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tggttgtgcttctgaatctcCtctagggtgtagtacttcac	10	9	4	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	18	71959066	71959066	C	T	SNP	CYB5A	ENST00000340533	human	ensembl	69_37n	-1	known	silent	c.45	p.E15	0.955	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5,prints_Cyt_B5,pfscan_Cyt_B5	-	no_errors	CYB5A	HGNC	ENSG00000166347	197	1	0.5	175	125	41.67	-	-	-	T	71959066	C	T	71959066	2	4	668	1	0	0	0	0	0	0	0	1	4153	680	24	4		4	CYB5A	18	71959066	Silent	SNP	C	TCGA-D8-A13Y-01A-11D-A10Y-09	21680548	71959066	6118182	58	57633										
ZNF560	0	genome.wustl.edu	37	chr19	9577519	9577519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tttggtgagagtttttaagcGatcatgaaagcacatggaat	11	4	1	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	19	9577519	9577519	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.2104	p.R702C	0.227	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	87	0	0	14	48	77.42	-	-	-	A	9577519	G	A	9577519	3	1	668	1	0	0	0	0	1	0	0	0	18087	1058	37	1	272	1	ZNF560	19	9577519	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		9577519	49551464	59	57634										
RYR1	0	genome.wustl.edu	37	chr19	38954480	38954480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	acaacctgcagatgtctgggGagacgctcaagtgagggccc	14	11	2	3			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	19	38954480	38954480	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2776	p.E926K	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	36	0	0	5	20	80	-	-	-	A	38954480	G	A	38954480	3	1	668	1	0	0	0	0	1	0	0	0	13854	1175	41	2	2862	2	RYR1	19	38954480	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	29376961	38954480	20174503	60	57635										
PAK7	0	genome.wustl.edu	37	chr20	9546864	9546864	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tgcgaactgctctgcagggaGgggtgatggtacaaggtggc	18	7	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	9546864	9546864	G	C	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	silent	c.1158	p.P386	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	130	0	0	124	92	42.4	-	-	-	C	9546864	G	C	9546864	2	2	668	1	0	0	0	0	0	0	0	1	11478	987	35	4		4	PAK7	20	9546864	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		9546864	53478656	61	57636										
KIAA1755	0	genome.wustl.edu	37	chr20	36841609	36841609	+	Frame_Shift_Del	DEL	A	A	-													0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	aaatgctcgcgggcagggtcAggcagcttgtgggagccttt							TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	36841609	36841609	A	-	DEL	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	frame_shift_del	c.3438	p.D1147fs	0.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	39	0	0	33	18	33.96	-	-	-	-	36841609	A	-	36841609	7	5	668	1	0	1	0	1	0	0	0	0	8309	175	7	0	168	0	KIAA1755	20	36841609	Frame_Shift_Del	DEL	A	TCGA-D8-A13Y-01A-11D-A10Y-09	27294745	36841609	26183911	62	57637										
ZNF512B	0	genome.wustl.edu	37	chr20	62592679	62592679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	cacctctgcgtgggtcttcaGgatgtggtatttgacgccac	12	11	3	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	62592679	62592679	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	69_37n	-1	known	silent	c.2410	p.L804	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700	78	0	0	9	111	91.74	-	-	-	A	62592679	G	A	62592679	2	1	668	1	0	0	0	0	0	0	0	1	18053	991	35	4		4	ZNF512B	20	62592679	Silent	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	25751070	62592679	432841	63	57638										
ZNF41	0	genome.wustl.edu	37	chrX	47308385	47308385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctcctcaggatgaattttctGatggtgggtgggagcttgtt	14	6	2	2			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	47308385	47308385	G	C	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.814	p.Q272E	0.772	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	307	0	0	21	132	86.27	-	-	-	C	47308385	G	C	47308385	3	2	668	1	0	0	0	0	1	0	0	0	17985	1299	45	2	1559	2	ZNF41	23	47308385	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09		47308385	107962175	64	57639										
TBX22	0	genome.wustl.edu	37	chrX	79277953	79277953	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	cgagccgcttggtaagtactGccattgccctgagcccgttg	12	13	0	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	79277953	79277953	G	T	SNP	TBX22	ENST00000476373	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBX22	HGNC	ENSG00000122145	88	0	0	10	56	84.85	-	-	-	T	79277953	G	T	79277953	1	4	668	0	1	0	0	0	0	0	0	0	15753	1334	46	4		4	TBX22	23	79277953	RNA	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	31969568	79277953	75992607	65	57640										
PCDH11X	0	genome.wustl.edu	37	chrX	91873742	91873742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	tcagtttgcagcaaggttggGtgcaaggtgctgatgggcta	16	6	1	1			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	91873742	91873742	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.3847	p.V1283M	0.972	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	243	0	0	39	172	81.13	-	-	-	A	91873742	G	A	91873742	3	1	668	1	0	0	0	0	1	0	0	0	11581	1261	44	4	3995	4	PCDH11X	23	91873742	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	12595789	91873742	63396818	66	57641										
HTATSF1	0	genome.wustl.edu	37	chrX	135593486	135593486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.242424242424242	16	0.00708681757112199	2.27633851468048	3.98359240069085	1.70725388601036	0.731857331096761	1	9	ctgaagatgacctcaacaagGagtctgaagaggaggttggc	14	7	2	5			TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	135593486	135593486	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1582	p.E528K	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	22	0	0	0	12	100	-	-	-	A	135593486	G	A	135593486	3	1	668	1	0	0	0	0	1	0	0	0	7487	1175	41	2	1616	2	HTATSF1	23	135593486	Missense_Mutation	SNP	G	TCGA-D8-A13Y-01A-11D-A10Y-09	43719744	135593486	19677074	67	57642										
LUZP1	0	genome.wustl.edu	37	chr1	23419915	23419915	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ttgttgtcttcctgattgcgGttcttttcattttctgattt	7	7	4	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	23419915	23419915	G	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	missense	c.840	p.N280K	1.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	181	0	0	388	58	13	-	-	-	C	23419915	G	C	23419915	3	2	669	1	0	0	0	0	1	0	0	0	9152	1252	44	4	2398	4	LUZP1	1	23419915	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09		23419915	225830706	1	57643										
ZCCHC11	0	genome.wustl.edu	37	chr1	52991318	52991318	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tacatgtctgttgcttctgaGatcgtggtgagttttgcaga	12	6	2	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	52991318	52991318	G	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	missense	c.635	p.S212F	0.975	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	207	0	0	186	23	10.95	-	-	-	A	52991318	G	A	52991318	3	1	669	1	0	0	0	0	1	0	0	0	17676	942	33	2	4418	2	ZCCHC11	1	52991318	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	29571403	52991318	196259303	2	57644										
MUC1	0	genome.wustl.edu	37	chr1	155160204	155160204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ggaagtagcctcaccgctgaCgtctgagatcgtcaggttat	12	10	3	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	155160204	155160204	C	A	SNP	MUC1	ENST00000425082	human	ensembl	69_37n	-1	known	missense	c.1333	p.V445F	0.000	smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC1	HGNC	ENSG00000185499	54	0	0	34	11	24.44	-	-	-	A	155160204	C	A	155160204	3	1	669	1	0	0	0	0	1	0	0	0	10042	536	19	3	368	3	MUC1	1	155160204	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	102168886	155160204	94090417	3	57645										
ESRRG	0	genome.wustl.edu	37	chr1	216896587	216896587	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	aaagaaaaaaggtacctactCttcctcgtagtgcagggaaa	9	8	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	216896587	216896587	C	G	SNP	ESRRG	ENST00000408911	human	ensembl	69_37n	-1	known	missense	c.55	p.E19Q	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	138	0	0	104	24	18.75	-	-	-	G	216896587	C	G	216896587	3	3	669	1	0	0	0	0	1	0	0	0	5299	927	32	2	1349	2	ESRRG	1	216896587	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	61736383	216896587	32354034	4	57646										
C2orf16	0	genome.wustl.edu	37	chr2	27801199	27801201	+	In_Frame_Del	DEL	TTG	TTG	-													0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ggagttgacagggtttcaaaTtgtaaaaactatgttaatcc							TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	2	27801199	27801201	TTG	-	DEL	C2orf16	ENST00000408964	human	ensembl	69_37n	1	known	in_frame_del	c.1760_1762	p.V588in_frame_del	0.002:0.002:0.072	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843	62	0	0	96	15	13.51	-	-	-	-	27801201	TTG	-	27801199	7	5	669	1	0	1	0	1	0	0	0	0	2177	1493	52	0	1762	0	C2orf16	2	27801199	In_Frame_Del	DEL	TTG	TCGA-D8-A13Z-01A-11D-A10Y-09		27801199	215398174	5	57647										
RAB17	0	genome.wustl.edu	37	chr2	238484088	238484088	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ttggccgaagtttccatgaaCagcaacttctggctgtcggc	11	11	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	2	238484088	238484088	C	T	SNP	RAB17	ENST00000264601	human	ensembl	69_37n	-1	known	silent	c.471	p.L157	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB17	HGNC	ENSG00000124839	77	0	0	45	6	11.76	-	-	-	T	238484088	C	T	238484088	2	4	669	1	0	0	0	0	0	0	0	1	12985	465	17	4		4	RAB17	2	238484088	Silent	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	210682889	238484088	4715285	6	57648										
BSN	0	genome.wustl.edu	37	chr3	49662490	49662490	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cgaagcaggcttctgctaccActcctggccatgagagcccc	10	16	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	3	49662490	49662490	A	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.307	p.T103S	0.945	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	35	0	0	37	6	13.95	-	-	-	T	49662490	A	T	49662490	3	4	669	1	0	0	0	0	1	0	0	0	1538	159	6	5	313	5	BSN	3	49662490	Missense_Mutation	SNP	A	TCGA-D8-A13Z-01A-11D-A10Y-09		49662490	148359940	7	57649										
MAP3K13	0	genome.wustl.edu	37	chr3	185191457	185191457	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ctgagaaaacggaagaaaatGaattcagcggctgtaggtct	12	6	2	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	3	185191457	185191457	G	T	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	nonsense	c.2338	p.E780*	0.021	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	15	0	0	21	7	25	-	-	-	T	185191457	G	T	185191457	4	4	669	1	0	0	0	0	0	1	0	0	9318	1291	45	2	2376	2	MAP3K13	3	185191457	Nonsense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	135528967	185191457	12830973	8	57650										
COL25A1	0	genome.wustl.edu	37	chr4	110221778	110221778	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgaaggtgcttctcttgcgaTtcttattttagccatatgtt	8	7	2	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	4	110221778	110221778	T	G	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	missense	c.328	p.I110L	0.985	NULL	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	301	0	0	251	38	13.15	-	-	-	G	110221778	T	G	110221778	3	3	669	1	0	0	0	0	1	0	0	0	3714	1493	52	5	1860	5	COL25A1	4	110221778	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09		110221778	80932498	9	57651										
SLC6A18	0	genome.wustl.edu	37	chr5	1239601	1239601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	acccccgggtgtggctggacGcagccacccagatattcttc	11	15	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	1239601	1239601	G	A	SNP	SLC6A18	ENST00000324642	human	ensembl	69_37n	1	known	missense	c.769	p.A257T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	107	0	0	45	8	15.09	-	-	-	A	1239601	G	A	1239601	3	1	669	1	0	0	0	0	1	0	0	0	14770	1087	38	1	791	1	SLC6A18	5	1239601	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09		1239601	179675659	10	57652										
ZFR	0	genome.wustl.edu	37	chr5	32356003	32356003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cggtaatggatccatgcctaGaactttgtgtatctggcgga	12	8	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	32356003	32356003	G	C	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	missense	c.3088	p.L1030V	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	240	0	0	234	38	13.97	-	-	-	C	32356003	G	C	32356003	3	2	669	1	0	0	0	0	1	0	0	0	17755	933	33	2	140	2	ZFR	5	32356003	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	31116402	32356003	148559257	11	57653										
OSMR	0	genome.wustl.edu	37	chr5	38918971	38918971	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	aaactgcatgccaatggaaaGatcctgttctataatgtagt	8	7	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	38918971	38918971	G	C	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	missense	c.1392	p.K464N	0.913	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	133	0	0	228	43	15.87	-	-	-	C	38918971	G	C	38918971	3	2	669	1	0	0	0	0	1	0	0	0	11365	933	33	2	1468	2	OSMR	5	38918971	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	6562968	38918971	141996289	12	57654										
RICTOR	0	genome.wustl.edu	37	chr5	39021230	39021230	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gagaatctctcttaagttatCagaaggttctagaaggaaag	10	5	4	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	39021230	39021230	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.106	p.D36N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	75	0	0	256	40	13.51	-	-	-	T	39021230	C	T	39021230	3	4	669	1	0	0	0	0	1	0	0	0	13442	826	29	2	5164	2	RICTOR	5	39021230	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	102259	39021230	141894030	13	57655										
ODZ2	0	genome.wustl.edu	37	chr5	167674943	167674943	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cacaacccgacgcgcatcacCcatgtctacaatcactccaa	4	18	3	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	167674943	167674943	C	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	silent	c.6999	p.T2333	0.953	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	148	0	0	111	47	29.75	-	-	-	A	167674943	C	A	167674943	2	1	669	1	0	0	0	0	0	0	0	1	10908	610	22	4		4	ODZ2	5	167674943	Silent	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	128653713	167674943	13240317	14	57656										
SENP6	0	genome.wustl.edu	37	chr6	76380373	76380373	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	caaagttcctttgacagtgtCattttaaactgtcgaagtat	7	7	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	76380373	76380373	C	A	SNP	SENP6	ENST00000503501	human	ensembl	69_37n	1	known	nonsense	c.176	p.S59*	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SENP6	HGNC	ENSG00000112701	90	0	0	156	22	12.36	-	-	-	A	76380373	C	A	76380373	4	1	669	1	0	0	0	0	0	1	0	0	14138	813	29	2	1371	2	SENP6	6	76380373	Nonsense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		76380373	94734694	15	57657										
SLC35A1	0	genome.wustl.edu	37	chr6	88218170	88218170	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	aaaaagttttaaagagttcaGatacttctctttgggtgaga	9	4	2	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	88218170	88218170	G	C	SNP	SLC35A1	ENST00000369552	human	ensembl	69_37n	1	known	missense	c.607	p.D203H	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A1	HGNC	ENSG00000164414	65	0	0	140	36	20.34	-	-	-	C	88218170	G	C	88218170	3	2	669	1	0	0	0	0	1	0	0	0	14659	942	33	2	629	2	SLC35A1	6	88218170	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	11837797	88218170	82896897	16	57658										
NKAIN2	0	genome.wustl.edu	37	chr6	124979382	124979382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tcaatgcaccgatcttggtgGatggagaatggaccaggatg	14	7	2	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	124979382	124979382	G	T	SNP	NKAIN2	ENST00000368417	human	ensembl	69_37n	1	known	missense	c.324	p.W108C	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	89	0	0	143	31	17.82	-	-	-	T	124979382	G	T	124979382	3	4	669	1	0	0	0	0	1	0	0	0	10508	1183	41	2	338	2	NKAIN2	6	124979382	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	36761212	124979382	46135685	17	57659										
LAMA2	0	genome.wustl.edu	37	chr6	129807718	129807718	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgatcagaccagagccgaatCtgtttcatgatggaagagaa	11	7	3	5			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	129807718	129807718	C	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.7849	p.L2617M	0.348	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	65	0	0	123	15	10.87	-	-	-	A	129807718	C	A	129807718	3	1	669	1	0	0	0	0	1	0	0	0	8660	912	32	2	8071	2	LAMA2	6	129807718	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	4828336	129807718	41307349	18	57660										
FERD3L	0	genome.wustl.edu	37	chr7	19184661	19184661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gaacatccgcttcctttcgcGgatgttggcggcctggcgct	13	13	0	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	7	19184661	19184661	G	A	SNP	FERD3L	ENST00000275461	human	ensembl	69_37n	-1	known	missense	c.325	p.R109C	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FERD3L	HGNC	ENSG00000146618	118	0	0	61	10	13.89	-	-	-	A	19184661	G	A	19184661	3	1	669	1	0	0	0	0	1	0	0	0	5862	1116	39	1	179	1	FERD3L	7	19184661	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09		19184661	139954002	19	57661										
PHF20L1	0	genome.wustl.edu	37	chr8	133849997	133849997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gcaacacagcgtgtgcatggGgctgctggaggagagcattc	16	9	0	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	8	133849997	133849997	G	A	SNP	PHF20L1	ENST00000220847	human	ensembl	69_37n	1	known	missense	c.293	p.G98E	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	257	0	0	116	37	24.18	-	-	-	A	133849997	G	A	133849997	3	1	669	1	0	0	0	0	1	0	0	0	11906	1232	43	4	2290	4	PHF20L1	8	133849997	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09		133849997	12514025	20	57662										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69423641	69423641	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgtttctgtacaagtagaaaTgagttctgctatttccaaag	8	6	2	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	9	69423641	69423641	T	G	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.1937	p.M646R	0.903	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	24	0	0	200	57	22.18	-	-	-	G	69423641	T	G	69423641	3	3	669	1	0	0	0	0	1	0	0	0	650	1464	51	5	1995	5	ANKRD20A4	9	69423641	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09		69423641	71789790	21	57663										
SVIL	0	genome.wustl.edu	37	chr10	29775379	29775379	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cccagaagcttccagaagtcTttggctgcatgagtgtgtgt	12	9	1	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	10	29775379	29775379	T	G	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.4593	p.K1531N	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	154	1	0.65	235	72	23.45	-	-	-	G	29775379	T	G	29775379	3	3	669	1	0	0	0	0	1	0	0	0	15512	1606	56	5	2107	5	SVIL	10	29775379	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09		29775379	105759368	22	57664										
PTEN	0	genome.wustl.edu	37	chr10	89717742	89717743	+	Frame_Shift_Ins	INS	-	-	G													0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgtggtgatatcaaagtagaINSgttcttccacaaacagaaca							TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	10	89717742	89717743	-	G	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.767_768	p.F257fs	1.000:0.979	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	85	0	0	64	51	44.35	-	-	-	G	89717743	-	G	89717742	7	5	669	1	0	1	1	0	0	0	0	0	12818	304	11	0	793	0	PTEN	10	89717742	Frame_Shift_Ins	INS	-	TCGA-D8-A13Z-01A-11D-A10Y-09	59942363	89717742	45817005	23	57665										
OR51A7	0	genome.wustl.edu	37	chr11	4928748	4928748	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	caccattctctttattataaAgacagagccctcgcttcatg	5	12	2	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	4928748	4928748	A	T	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	1	known	missense	c.149	p.K50M	0.005	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	85	0	0	105	44	29.53	-	-	-	T	4928748	A	T	4928748	3	4	669	1	0	0	0	0	1	0	0	0	11161	72	3	5	151	5	OR51A7	11	4928748	Missense_Mutation	SNP	A	TCGA-D8-A13Z-01A-11D-A10Y-09		4928748	130077768	24	57666										
EIF3F	0	genome.wustl.edu	37	chr11	8016560	8016560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	atgaagacctgctttagcccCaacagagtgattggactctc	9	11	1	4			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	8016560	8016560	C	T	SNP	EIF3F	ENST00000537635	human	ensembl	69_37n	1	known	silent	c.822	p.P274	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	EIF3F	HGNC	ENSG00000175390	91	0	0	51	24	32	-	-	-	T	8016560	C	T	8016560	2	4	669	1	0	0	0	0	0	0	0	1	5053	581	21	4		4	EIF3F	11	8016560	Silent	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	3087812	8016560	126989956	25	57667										
LDLRAD3	0	genome.wustl.edu	37	chr11	36119907	36119907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tctgctttgctccaccgcccGctaccactgcaagaacggcc	8	18	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	36119907	36119907	G	A	SNP	LDLRAD3	ENST00000315571	human	ensembl	69_37n	1	known	missense	c.350	p.R117H	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD3	HGNC	ENSG00000179241	74	0	0	50	10	16.67	-	-	-	A	36119907	G	A	36119907	3	1	669	1	0	0	0	0	1	0	0	0	8761	1087	38	1	364	1	LDLRAD3	11	36119907	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	28103347	36119907	98886609	26	57668										
DAK	0	genome.wustl.edu	37	chr11	61112999	61112999	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	aagaccagcctcccagcctgGtctgctgccatggatgccgg	12	15	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	61112999	61112999	G	C	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	missense	c.1413	p.W471C	1.000	pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	41	0	0	29	6	17.14	-	-	-	C	61112999	G	C	61112999	3	2	669	1	0	0	0	0	1	0	0	0	4260	1270	44	4	1467	4	DAK	11	61112999	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	24993092	61112999	73893517	27	57669										
SLC22A11	0	genome.wustl.edu	37	chr11	64329577	64329577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cgtcatctactgcggcctgcGgttcgtggccgcttttggga	14	12	2	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	64329577	64329577	G	A	SNP	SLC22A11	ENST00000301891	human	ensembl	69_37n	1	known	missense	c.599	p.R200Q	0.996	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	82	0	0	17	14	45.16	-	-	-	A	64329577	G	A	64329577	3	1	669	1	0	0	0	0	1	0	0	0	14531	1116	39	1	609	1	SLC22A11	11	64329577	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	3216578	64329577	70676939	28	57670										
FAM118B	0	genome.wustl.edu	37	chr11	126110852	126110852	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gattttgatcttttagaagaTgaggagagcaaaaagtttca	10	3	2	5			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	126110852	126110852	T	G	SNP	FAM118B	ENST00000533050	human	ensembl	69_37n	1	known	missense	c.252	p.D84E	1.000	NULL	NULL	-	no_errors	FAM118B	HGNC	ENSG00000197798	74	0	0	50	16	24.24	-	-	-	G	126110852	T	G	126110852	3	3	669	1	0	0	0	0	1	0	0	0	5452	1461	51	5	258	5	FAM118B	11	126110852	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09	61781275	126110852	8895664	29	57671										
ST3GAL4	0	genome.wustl.edu	37	chr11	126283912	126283912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	attaagcggatgctggagatGggagctatcaagaacctcac	12	8	2	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	126283912	126283912	G	A	SNP	ST3GAL4	ENST00000356132	human	ensembl	69_37n	1	known	missense	c.990	p.M330I	0.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL4	HGNC	ENSG00000110080	108	0	0	76	15	16.48	-	-	-	A	126283912	G	A	126283912	3	1	669	1	0	0	0	0	1	0	0	0	15308	1348	47	4	998	4	ST3GAL4	11	126283912	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	173060	126283912	8722604	30	57672										
PRDM10	0	genome.wustl.edu	37	chr11	129827748	129827748	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cacctgctgtggggggcgaaCctggtcatcggtatagacaa	14	10	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	129827748	129827748	C	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.127	p.V43F	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	85	0	0	72	12	14.29	-	-	-	A	129827748	C	A	129827748	3	1	669	1	0	0	0	0	1	0	0	0	12532	507	18	4	3471	4	PRDM10	11	129827748	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	3543836	129827748	5178768	31	57673										
GRIN2B	0	genome.wustl.edu	37	chr12	13716276	13716276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgtcgtaggagtgctgccggCgcagtttgttccggttcttc	14	10	1	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	13716276	13716276	C	T	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.3896	p.R1299H	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	189	0	0	137	97	41.1	-	-	-	T	13716276	C	T	13716276	3	4	669	1	0	0	0	0	1	0	0	0	6831	768	27	1	562	1	GRIN2B	12	13716276	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		13716276	120135619	32	57674										
GUCY2C	0	genome.wustl.edu	37	chr12	14804406	14804406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ggtatcaagtttcactgtgcCgtagaacttggtcaggttgt	12	7	3	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	14804406	14804406	C	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.1645	p.G549C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	97	0	0	149	33	18.13	-	-	-	A	14804406	C	A	14804406	3	1	669	1	0	0	0	0	1	0	0	0	6947	652	23	3	1628	3	GUCY2C	12	14804406	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	1088130	14804406	119047489	33	57675										
MLL2	0	genome.wustl.edu	37	chr12	49418417	49418417	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gcacagccagtggggttgatCatgagtggcagctccataag	14	9	1	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	49418417	49418417	C	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.15996	p.M5332I	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	97	0	0	37	12	24.49	-	-	-	A	49418417	C	A	49418417	3	1	669	1	0	0	0	0	1	0	0	0	9692	826	29	2	637	2	MLL2	12	49418417	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	34614011	49418417	84433478	34	57676										
TARBP2	0	genome.wustl.edu	37	chr12	53895208	53895208	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	agggaatgagtgaagaggagCaaggctccggcactaccacg	15	9	0	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	53895208	53895208	C	T	SNP	TARBP2	ENST00000266987	human	ensembl	69_37n	1	known	nonsense	c.16	p.Q6*	1.000	NULL	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	TARBP2	HGNC	ENSG00000139546	19	0	0	19	5	20.83	-	-	-	T	53895208	C	T	53895208	4	4	669	1	0	0	0	0	0	1	0	0	15648	711	25	4	18	4	TARBP2	12	53895208	Nonsense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	4476791	53895208	79956687	35	57677										
LRP1	0	genome.wustl.edu	37	chr12	57587027	57587027	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gcgagtgcatcaacttcagcCtgacctgcgacggcgtcccc	11	16	2	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	57587027	57587027	C	G	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.7624	p.L2542V	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	68	0	0	33	4	10.81	-	-	-	G	57587027	C	G	57587027	3	3	669	1	0	0	0	0	1	0	0	0	9017	680	24	4	7806	4	LRP1	12	57587027	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	3691819	57587027	76264868	36	57678										
TMBIM4	0	genome.wustl.edu	37	chr12	66531907	66531907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gaaaagaagggctcctgcagCggctaagaccaactccatta	10	11	0	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	66531907	66531907	C	T	SNP	TMBIM4	ENST00000358230	human	ensembl	69_37n	-1	known	missense	c.550	p.A184T	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957	120	0	0	70	9	11.25	-	-	-	T	66531907	C	T	66531907	3	4	669	1	0	0	0	0	1	0	0	0	16077	768	27	1	170	1	TMBIM4	12	66531907	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	8944880	66531907	67319988	37	57679										
TPH2	0	genome.wustl.edu	37	chr12	72338118	72338118	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	attgaatccaggaaatctcgGcgaagaagttctgaggttga	12	6	2	4			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	72338118	72338118	G	C	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	silent	c.300	p.R100	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	178	0	0	212	28	11.67	-	-	-	C	72338118	G	C	72338118	2	2	669	1	0	0	0	0	0	0	0	1	16498	1190	42	4		4	TPH2	12	72338118	Silent	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	5806211	72338118	61513777	38	57680										
ACAD10	0	genome.wustl.edu	37	chr12	112153693	112153693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	actacatcaggctggctaatCgtgatctagttctgaggaag	11	8	3	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	112153693	112153693	C	T	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	missense	c.1012	p.R338C	0.026	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	138	0	0	122	35	22.29	-	-	-	T	112153693	C	T	112153693	3	4	669	1	0	0	0	0	1	0	0	0	108	884	31	1	1038	1	ACAD10	12	112153693	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	39815575	112153693	21698202	39	57681										
PSMD9	0	genome.wustl.edu	37	chr12	122326782	122326782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gatgtccgacgaggaagcgaGgcagagcggaggctcctcgc	17	11	0	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	122326782	122326782	G	A	SNP	PSMD9	ENST00000541212	human	ensembl	69_37n	1	known	missense	c.20	p.R7K	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ	-	no_errors	PSMD9	HGNC	ENSG00000110801	21	0	0	8	4	33.33	-	-	-	A	122326782	G	A	122326782	3	1	669	1	0	0	0	0	1	0	0	0	12785	1000	35	4	22	4	PSMD9	12	122326782	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	10173089	122326782	11525113	40	57682										
COG6	0	genome.wustl.edu	37	chr13	40253739	40253739	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgtcaaagttctcttgcgtaCaaatcaacaaacggcagggt	9	9	3	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	13	40253739	40253739	C	G	SNP	COG6	ENST00000455146	human	ensembl	69_37n	1	known	missense	c.605	p.T202R	1.000	pfam_COG_su6	pfam_COG_su6	-	no_errors	COG6	HGNC	ENSG00000133103	113	0	0	96	71	42.51	-	-	-	G	40253739	C	G	40253739	3	3	669	1	0	0	0	0	1	0	0	0	3692	478	17	4	627	4	COG6	13	40253739	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		40253739	74916139	41	57683										
FBN1	0	genome.wustl.edu	37	chr15	48780678	48780678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	agaggctgggtatcatcttgCactcattgatatcttcaaga	9	8	5	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	15	48780678	48780678	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.3095	p.C1032Y	1.000	pfam_EGF-like_Ca-bd,superfamily_TB_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	79	0	0	36	8	18.18	-	-	-	T	48780678	C	T	48780678	3	4	669	1	0	0	0	0	1	0	0	0	5748	710	25	4	5684	4	FBN1	15	48780678	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		48780678	53750714	42	57684										
MYH11	0	genome.wustl.edu	37	chr16	15931822	15931822	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgtagcacggaggcttcgttGaggcacgtcagctccgccat	13	12	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	15931822	15931822	G	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.288	p.L96	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	239	0	0	220	96	30.19	-	-	-	T	15931822	G	T	15931822	2	4	669	1	0	0	0	0	0	0	0	1	10103	1277	45	2		2	MYH11	16	15931822	Silent	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09		15931822	74422931	43	57685										
ABCC1	0	genome.wustl.edu	37	chr16	16219730	16219730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tggaaaccaacatcgtggccGtggagaggctcaaggagtat	14	8	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	16219730	16219730	G	A	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.3811	p.V1271M	1.000	superfamily_ABC_transptrTM_dom_typ1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	67	0	0	52	34	39.53	-	-	-	A	16219730	G	A	16219730	3	1	669	1	0	0	0	0	1	0	0	0	49	1145	40	1	3883	1	ABCC1	16	16219730	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	287908	16219730	74135023	44	57686										
FAM96B	0	genome.wustl.edu	37	chr16	66966114	66966114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	caaaggccaggctcaggagcGggctgacaggcactgattca	14	11	2	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	66966114	66966114	G	A	SNP	FAM96B	ENST00000422424	human	ensembl	69_37n	-1	known	missense	c.484	p.R162C	0.980	NULL	pfam_DUF59	-	no_errors	FAM96B	HGNC	ENSG00000166595	75	0	0	39	13	25	-	-	-	A	66966114	G	A	66966114	3	1	669	1	0	0	0	0	1	0	0	0	5701	1116	39	1	11	1	FAM96B	16	66966114	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	50746384	66966114	23388639	45	57687										
HYDIN	0	genome.wustl.edu	37	chr16	70869618	70869618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ggaattgtgaacagaatggaCtgattaaatgtgagctgggc	14	4	0	4			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	70869618	70869618	C	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.13359	p.Q4453H	0.079	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	50	0	0	38	6	13.64	-	-	-	G	70869618	C	G	70869618	3	3	669	1	0	0	0	0	1	0	0	0	7521	564	20	4	2039	4	HYDIN	16	70869618	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	3903504	70869618	19485135	46	57688										
PHLPP2	0	genome.wustl.edu	37	chr16	71683709	71683709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cattgtcctgacagccatagCtctgcgctaatgtgcacagc	9	13	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	71683709	71683709	C	T	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.3056	p.S1019N	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	243	0	0	116	18	13.43	-	-	-	T	71683709	C	T	71683709	3	4	669	1	0	0	0	0	1	0	0	0	11929	797	28	4	919	4	PHLPP2	16	71683709	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	814091	71683709	18671044	47	57689										
TP53	0	genome.wustl.edu	37	chr17	7578508	7578508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	caacccacagctgcacagggCaggtcttggccagttggcaa	12	13	1	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	7578508	7578508	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.422	p.C141Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	53	0	0	49	29	36.71	-	-	-	T	7578508	C	T	7578508	3	4	669	1	0	0	0	0	1	0	0	0	16477	710	25	4	876	4	TP53	17	7578508	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		7578508	73616702	48	57690										
KRT17	0	genome.wustl.edu	37	chr17	39780482	39780482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gtccaggtaggaggccaggcGgtcattgaggttctgcatgg	17	8	2	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	39780482	39780482	G	A	SNP	KRT17	ENST00000311208	human	ensembl	69_37n	-1	known	missense	c.280	p.R94C	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT17	HGNC	ENSG00000128422	93	0	0	65	9	12.16	-	-	-	A	39780482	G	A	39780482	3	1	669	1	0	0	0	0	1	0	0	0	8507	1116	39	1	1050	1	KRT17	17	39780482	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	32201974	39780482	41414728	49	57691										
KIAA0195	0	genome.wustl.edu	37	chr17	73486391	73486391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	aactgcctgtggagaggcccGtgtcctggcccagatgagca	14	12	0	3			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	73486391	73486391	G	T	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	missense	c.1031	p.R344L	0.997	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	62	0	0	53	9	14.52	-	-	-	T	73486391	G	T	73486391	3	4	669	1	0	0	0	0	1	0	0	0	8212	1145	40	3	1065	3	KIAA0195	17	73486391	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	33705909	73486391	7708819	50	57692										
PLIN4	0	genome.wustl.edu	37	chr19	4508835	4508835	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ccctggcttggaactggccgTgctgcaggtggctcaccgcg	15	14	1	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	4508835	4508835	T	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.3605	p.H1202L	0.761	pfam_Perilipin	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	61	0	0	15	23	60.53	-	-	-	A	4508835	T	A	4508835	3	1	669	1	0	0	0	0	1	0	0	0	12166	1696	59	5	480	5	PLIN4	19	4508835	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09		4508835	54620148	51	57693										
ZNRF4	0	genome.wustl.edu	37	chr19	5456398	5456398	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tacctgccagaaggcccaggTccgcaccttcacgtggcaca	10	16	1	1			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	5456398	5456398	T	A	SNP	ZNRF4	ENST00000222033	human	ensembl	69_37n	1	known	missense	c.896	p.V299D	0.002	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	82	0	0	31	7	17.95	-	-	-	A	5456398	T	A	5456398	3	1	669	1	0	0	0	0	1	0	0	0	18307	1667	58	5	898	5	ZNRF4	19	5456398	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09	947563	5456398	53672585	52	57694										
INSR	0	genome.wustl.edu	37	chr19	7267521	7267521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	atcctccacggaatccaggaTacgggaccagtcgatagtgg	12	11	0	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	7267521	7267521	T	C	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.487	p.I163V	0.997	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	116	0	0	109	13	10.66	-	-	-	C	7267521	T	C	7267521	3	2	669	1	0	0	0	0	1	0	0	0	7827	1406	49	5	3745	5	INSR	19	7267521	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09	1811123	7267521	51861462	53	57695										
ZNF526	0	genome.wustl.edu	37	chr19	42729694	42729694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cacgttggtggctcaccggcGggcccacactgccaacccat	11	17	1	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	42729694	42729694	G	A	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	1	known	missense	c.1139	p.R380Q	0.990	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	56	0	0	20	5	20	-	-	-	A	42729694	G	A	42729694	3	1	669	1	0	0	0	0	1	0	0	0	18063	1116	39	1	1141	1	ZNF526	19	42729694	Missense_Mutation	SNP	G	TCGA-D8-A13Z-01A-11D-A10Y-09	35462173	42729694	16399289	54	57696										
TSKS	0	genome.wustl.edu	37	chr19	50245191	50245191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	tgggacaggcaggagtcaggCccctctgcttcacctcgtcc	12	15	3	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	50245191	50245191	C	T	SNP	TSKS	ENST00000246801	human	ensembl	69_37n	-1	known	missense	c.1448	p.G483D	0.998	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467	207	0	0	51	82	61.65	-	-	-	T	50245191	C	T	50245191	3	4	669	1	0	0	0	0	1	0	0	0	16722	739	26	4	342	4	TSKS	19	50245191	Missense_Mutation	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	7515497	50245191	8883792	55	57697										
NLRP7	0	genome.wustl.edu	37	chr19	55447631	55447631	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	cgtgaccgtgagacccacctCaggtactgcaggttgcattt	11	12	1	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	55447631	55447631	C	G	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	silent	c.2382	p.L794	0.072	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	142	0	0	50	9	15.25	-	-	-	G	55447631	C	G	55447631	2	3	669	1	0	0	0	0	0	0	0	1	10554	813	29	2		2	NLRP7	19	55447631	Silent	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09	5202440	55447631	3681352	56	57698										
ZNF551	0	genome.wustl.edu	37	chr19	58199532	58199532	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	ctttacccacaaatcagaccTtattcagcaccaaagagttc	4	13	2	2			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	58199532	58199532	T	G	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.1889	p.L630R	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	100	0	0	168	31	15.58	-	-	-	G	58199532	T	G	58199532	3	3	669	1	0	0	0	0	1	0	0	0	18079	1609	56	5	1851	5	ZNF551	19	58199532	Missense_Mutation	SNP	T	TCGA-D8-A13Z-01A-11D-A10Y-09	2751901	58199532	929451	57	57699										
COL18A1	0	genome.wustl.edu	37	chr21	46911228	46911228	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.120689655172414	7	0.560366546294671	1.36363636363636	3.09917355371901	0.568181818181818	0.37070938215103	0.990584086731441	0	gtctacgtgtcggagcaggaCgtaaggacgctgcgtgggtg	18	8	1	0			TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	21	46911228	46911228	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	silent	c.3402	p.D1134	0.261	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	14	0	0	12	4	25	-	-	-	T	46911228	C	T	46911228	2	4	669	1	0	0	0	0	0	0	0	1	3705	550	19	1		1	COL18A1	21	46911228	Silent	SNP	C	TCGA-D8-A13Z-01A-11D-A10Y-09		46911228	1218667	58	57700										
PRAMEF11	0	genome.wustl.edu	37	chr1	12887609	12887609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tcttggcattgaggaagcacCcatgggccatagcttcagac	11	11	2	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	12887609	12887609	C	T	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.248	p.G83E	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	67	0	0	42	20	32.26	-	-	-	T	12887609	C	T	12887609	3	4	670	1	0	0	0	0	1	0	0	0	12504	623	22	4	1070	4	PRAMEF11	1	12887609	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09		12887609	236363012	1	57701										
PQLC2	0	genome.wustl.edu	37	chr1	19653907	19653907	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tgctgctgctcgacaccatcGtatccttcagggcgtgtggg	13	12	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	19653907	19653907	G	A	SNP	PQLC2	ENST00000375153	human	ensembl	69_37n	1	known	splice_site	c.804+1	e6+1	0.998	-	-	-	no_errors	PQLC2	HGNC	ENSG00000040487	19	0	0	11	9	45	-	-	-	A	19653907	G	A	19653907	5	1	670	1	0	0	0	0	0	0	1	0	12496	1159	40	1	827	1	PQLC2	1	19653907	Splice_Site	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	6766298	19653907	229596714	2	57702										
HS2ST1	0	genome.wustl.edu	37	chr1	87380793	87380793	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ggccttcgcggtggcgatgcTcttcttggaaaaccagatcc	12	12	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	87380793	87380793	T	G	SNP	HS2ST1	ENST00000370550	human	ensembl	69_37n	1	known	missense	c.74	p.L25R	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS2ST1	HGNC	ENSG00000153936	122	1	0.81	67	28	29.17	-	-	-	G	87380793	T	G	87380793	3	3	670	1	0	0	0	0	1	0	0	0	7413	1551	54	5	76	5	HS2ST1	1	87380793	Missense_Mutation	SNP	T	TCGA-D8-A140-01A-11D-A10Y-09	67726886	87380793	161869828	3	57703										
ANP32E	0	genome.wustl.edu	37	chr1	150204143	150204143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtttatttaagctgggaagcCgggccagcgaacttagttcc	12	9	0	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	150204143	150204143	C	T	SNP	ANP32E	ENST00000314136	human	ensembl	69_37n	-1	known	missense	c.176	p.R59Q	0.911	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401	133	0	0	240	37	13.31	-	-	-	T	150204143	C	T	150204143	3	4	670	1	0	0	0	0	1	0	0	0	708	652	23	1	654	1	ANP32E	1	150204143	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	62823350	150204143	99046478	4	57704										
CD5L	0	genome.wustl.edu	37	chr1	157805906	157805906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cctccacccgcccttcacagCggtggaggccccccaccagc	9	22	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	157805906	157805906	C	T	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	missense	c.95	p.R32H	0.807	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	74	0	0	107	21	16.41	-	-	-	T	157805906	C	T	157805906	3	4	670	1	0	0	0	0	1	0	0	0	3056	768	27	1	964	1	CD5L	1	157805906	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	7601763	157805906	91444715	5	57705										
MAEL	0	genome.wustl.edu	37	chr1	166974325	166974325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ttctccagtctgatgatagaAccagagtcaactggtgtttg	10	8	3	4			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	166974325	166974325	A	G	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	missense	c.661	p.T221A	0.999	superfamily_CH-domain	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	115	0	0	134	29	17.68	-	-	-	G	166974325	A	G	166974325	3	3	670	1	0	0	0	0	1	0	0	0	9221	43	2	5	687	5	MAEL	1	166974325	Missense_Mutation	SNP	A	TCGA-D8-A140-01A-11D-A10Y-09	9168419	166974325	82276296	6	57706										
ZNF281	0	genome.wustl.edu	37	chr1	200378223	200378223	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cctcagtgccatggtggtcaTcagtcctgctactgctgctg	11	13	3	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	200378223	200378223	T	A	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	missense	c.611	p.D204V	0.912	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	115	0	0	111	34	23.45	-	-	-	A	200378223	T	A	200378223	3	1	670	1	0	0	0	0	1	0	0	0	17914	1435	50	5	2080	5	ZNF281	1	200378223	Missense_Mutation	SNP	T	TCGA-D8-A140-01A-11D-A10Y-09	33403898	200378223	48872398	7	57707										
SLC26A9	0	genome.wustl.edu	37	chr1	205897095	205897095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gcccatagccaggttgatgaCgtagctcacgatggctaggg	14	10	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	205897095	205897095	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.1036	p.V346I	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	65	0	0	80	15	15.79	-	-	-	T	205897095	C	T	205897095	3	4	670	1	0	0	0	0	1	0	0	0	14613	536	19	1	1687	1	SLC26A9	1	205897095	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	5518872	205897095	43353526	8	57708										
OBSCN	0	genome.wustl.edu	37	chr1	228521466	228521466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtgctgcctactcgtctgccCggctgctggttcgaggtggg	16	12	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	228521466	228521466	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.16039	p.R5347W	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	54	0	0	70	27	27.84	-	-	-	T	228521466	C	T	228521466	3	4	670	1	0	0	0	0	1	0	0	0	10885	643	23	1	16269	1	OBSCN	1	228521466	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	22624371	228521466	20729155	9	57709										
OBSCN	0	genome.wustl.edu	37	chr1	228537694	228537695	+	Frame_Shift_Ins	INS	-	-	T													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccggtgtggactctggccagINStacatgtgcttcgcggccag							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	228537694	228537695	-	T	INS	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	frame_shift_ins	c.18252_18253	p.Y6084fs	1.000:1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	46	0	0	49	9	15.52	-	-	-	T	228537695	-	T	228537694	7	5	670	1	0	1	1	0	0	0	0	0	10885	1020	36	0	18550	0	OBSCN	1	228537694	Frame_Shift_Ins	INS	-	TCGA-D8-A140-01A-11D-A10Y-09	16228	228537694	20712927	10	57710										
ZP4	0	genome.wustl.edu	37	chr1	238051691	238051691	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtagcaggaattcacctcttCagagctataacaacagccta	7	11	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	1	238051691	238051691	C	A	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	nonsense	c.520	p.E174*	0.000	pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	142	0	0	166	45	21.33	-	-	-	A	238051691	C	A	238051691	4	1	670	1	0	0	0	0	0	1	0	0	18311	835	29	2	1138	2	ZP4	1	238051691	Nonsense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	9513997	238051691	11198930	11	57711										
AAK1	0	genome.wustl.edu	37	chr2	69870081	69870081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ctcttccgatgtagccactgCccaggcccgaggtgctgccc	11	17	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	2	69870081	69870081	C	T	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.92	p.G31D	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	28	0	0	14	8	34.78	-	-	-	T	69870081	C	T	69870081	3	4	670	1	0	0	0	0	1	0	0	0	16	739	26	4	2877	4	AAK1	2	69870081	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09		69870081	173329292	12	57712										
SLC20A1	0	genome.wustl.edu	37	chr2	113404906	113404906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tttactatgtttcaggttctGctgtgtggcaactcgtggct	11	8	2	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	2	113404906	113404906	G	T	SNP	SLC20A1	ENST00000272542	human	ensembl	69_37n	1	known	missense	c.340	p.A114S	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136	304	0	0	184	95	34.05	-	-	-	T	113404906	G	T	113404906	3	4	670	1	0	0	0	0	1	0	0	0	14527	1319	46	4	346	4	SLC20A1	2	113404906	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	43534825	113404906	129794467	13	57713										
ITPR1	0	genome.wustl.edu	37	chr3	4699856	4699856	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtaggttgcggaatgcccaaGaaaagatggtatactccctg	12	8	0	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	3	4699856	4699856	G	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	nonsense	c.1000	p.E334*	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	159	0	0	99	42	29.58	-	-	-	T	4699856	G	T	4699856	4	4	670	1	0	0	0	0	0	1	0	0	7974	943	33	2	1087	2	ITPR1	3	4699856	Nonsense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		4699856	193322574	14	57714										
SEC13	0	genome.wustl.edu	37	chr3	10354321	10354321	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	caggtgccgttttcctctctCcagataatgactttccggtc	8	13	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	3	10354321	10354321	C	T	SNP	SEC13	ENST00000350697	human	ensembl	69_37n	-1	known	nonsense	c.258	p.W86*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020	206	0	0	115	45	28.12	-	-	-	T	10354321	C	T	10354321	4	4	670	1	0	0	0	0	0	1	0	0	14068	856	30	2	734	2	SEC13	3	10354321	Nonsense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	5654465	10354321	187668109	15	57715										
FRMD4B	0	genome.wustl.edu	37	chr3	69244205	69244205	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cagcaagttgtcatctaattTgaacgcagtacccacacgtc	7	12	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	3	69244205	69244205	T	G	SNP	FRMD4B	ENST00000398540	human	ensembl	69_37n	-1	known	missense	c.1456	p.K486Q	1.000	pfam_DUF3338	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD4B	HGNC	ENSG00000114541	168	0	0	94	48	33.8	-	-	-	G	69244205	T	G	69244205	3	3	670	1	0	0	0	0	1	0	0	0	6101	1821	63	5	1680	5	FRMD4B	3	69244205	Missense_Mutation	SNP	T	TCGA-D8-A140-01A-11D-A10Y-09	58889884	69244205	128778225	16	57716										
SEC61A1	0	genome.wustl.edu	37	chr3	127788327	127788327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cccctcccccaggtacatccCcacagccgcggcctttggtg	9	20	0	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	3	127788327	127788327	C	T	SNP	SEC61A1	ENST00000243253	human	ensembl	69_37n	1	known	missense	c.1253	p.P418L	1.000	pfam_SecY,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	pfam_SecY,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY,tigrfam_SecY	-	no_errors	SEC61A1	HGNC	ENSG00000058262	27	0	0	6	16	72.73	-	-	-	T	127788327	C	T	127788327	3	4	670	1	0	0	0	0	1	0	0	0	14088	623	22	4	1299	4	SEC61A1	3	127788327	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	58544122	127788327	70234103	17	57717										
GK2	0	genome.wustl.edu	37	chr4	80327945	80327945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tggggttcaaggctccaaacGcttactccctctgcagcccc	9	16	2	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	4	80327945	80327945	G	A	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	silent	c.1410	p.S470	0.000	tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	148	0	0	101	39	27.86	-	-	-	A	80327945	G	A	80327945	2	1	670	1	0	0	0	0	0	0	0	1	6473	1078	38	1		1	GK2	4	80327945	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		80327945	110826331	18	57718										
HELT	0	genome.wustl.edu	37	chr4	185940105	185940105	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtcagacaagctcaaggaacGcaaagtgagtcggctgagcc	13	10	2	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	4	185940105	185940105	G	T	SNP	HELT	ENST00000338875	human	ensembl	69_37n	1	known	missense	c.23	p.R8L	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HELT	HGNC	ENSG00000187821	94	0	0	52	21	28.77	-	-	-	T	185940105	G	T	185940105	3	4	670	1	0	0	0	0	1	0	0	0	7099	1087	38	3	25	3	HELT	4	185940105	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	105612160	185940105	5214171	19	57719										
FCHO2	0	genome.wustl.edu	37	chr5	72330517	72330517	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tgaagaatgtgacactgctaGtgcagttgaaggtaagttga	13	4	0	5			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	5	72330517	72330517	G	T	SNP	FCHO2	ENST00000341845	human	ensembl	69_37n	1	known	missense	c.830	p.S277I	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,smart_FCH,pfscan_FCH	-	no_errors	FCHO2	HGNC	ENSG00000157107	144	0	0	101	34	25.19	-	-	-	T	72330517	G	T	72330517	3	4	670	1	0	0	0	0	1	0	0	0	5834	1029	36	4	864	4	FCHO2	5	72330517	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		72330517	108584743	20	57720										
MAN2A1	0	genome.wustl.edu	37	chr5	109091068	109091068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gcttgaaattgtgacaggtgGctgggttatgcctgatgaag	15	5	0	4			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	5	109091068	109091068	G	T	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	missense	c.746	p.G249V	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	276	0	0	149	71	32.27	-	-	-	T	109091068	G	T	109091068	3	4	670	1	0	0	0	0	1	0	0	0	9285	1203	42	4	764	4	MAN2A1	5	109091068	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	36760551	109091068	71824192	21	57721										
GRM6	0	genome.wustl.edu	37	chr5	178410025	178410025	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tcgttgaaggtctcgggcacGccacgggccttgatggcgta	15	11	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	5	178410025	178410025	G	A	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	silent	c.2322	p.G774	0.001	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	73	0	0	33	26	44.07	-	-	-	A	178410025	G	A	178410025	2	1	670	1	0	0	0	0	0	0	0	1	6852	1074	38	1		1	GRM6	5	178410025	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	69318957	178410025	2505235	22	57722										
HIST1H1E	0	genome.wustl.edu	37	chr6	26156678	26156680	+	In_Frame_Del	DEL	GAA	GAA	-													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cctgccgagaagactcccgtGaagaagaaggcccgcaagtc							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	6	26156678	26156680	GAA	-	DEL	HIST1H1E	ENST00000304218	human	ensembl	69_37n	1	known	in_frame_del	c.60_62	p.K23in_frame_del	0.932:0.994:0.999	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	17	0	0	6	5	45.45	-	-	-	-	26156680	GAA	-	26156678	7	5	670	1	0	1	0	1	0	0	0	0	7177	1277	45	0	62	0	HIST1H1E	6	26156678	In_Frame_Del	DEL	GAA	TCGA-D8-A140-01A-11D-A10Y-09		26156678	144958389	23	57723										
GRM4	0	genome.wustl.edu	37	chr6	34004103	34004103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tggcagcgatgcccaccacgGccaggaagaggggcagcacg	16	13	0	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	6	34004103	34004103	G	A	SNP	GRM4	ENST00000374181	human	ensembl	69_37n	-1	known	missense	c.1784	p.A595V	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	41	0	0	25	15	37.5	-	-	-	A	34004103	G	A	34004103	3	1	670	1	0	0	0	0	1	0	0	0	6850	1203	42	4	966	4	GRM4	6	34004103	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	7847425	34004103	137110964	24	57724										
SLC35B2	0	genome.wustl.edu	37	chr6	44224176	44224176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccaggggaacctcatcagagGccttgggctcattgccaaac	11	13	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	6	44224176	44224176	G	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.263	p.A88D	0.983	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	48	0	0	20	15	42.86	-	-	-	T	44224176	G	T	44224176	3	4	670	1	0	0	0	0	1	0	0	0	14665	1203	42	4	1043	4	SLC35B2	6	44224176	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	10220073	44224176	126890891	25	57725										
GPR126	0	genome.wustl.edu	37	chr6	142711398	142711398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ctatttccaatgggcagatgGaattatctatagaatatccg	8	7	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	6	142711398	142711398	G	A	SNP	GPR126	ENST00000367609	human	ensembl	69_37n	1	known	missense	c.1226	p.G409E	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_CUB,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Pentaxin,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	102	0	0	29	24	45.28	-	-	-	A	142711398	G	A	142711398	3	1	670	1	0	0	0	0	1	0	0	0	6690	1174	41	2	1252	2	GPR126	6	142711398	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	98487222	142711398	28403669	26	57726										
TIAM2	0	genome.wustl.edu	37	chr6	155561720	155561720	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aacgacagtcaggccaacggCatggaaggaccgcgggagaa	15	10	1	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	6	155561720	155561720	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	silent	c.3225	p.G1075	0.597	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	68	0	0	29	17	36.96	-	-	-	T	155561720	C	T	155561720	2	4	670	1	0	0	0	0	0	0	0	1	15986	697	25	4		4	TIAM2	6	155561720	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	12850322	155561720	15553347	27	57727										
AUTS2	0	genome.wustl.edu	37	chr7	70255691	70255691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	atgctcagagaagactacgaGcacacgcggctccactccgt	10	14	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	7	70255691	70255691	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	silent	c.3489	p.E1163	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	36	0	0	28	20	41.67	-	-	-	A	70255691	G	A	70255691	2	1	670	1	0	0	0	0	0	0	0	1	1229	962	34	4		4	AUTS2	7	70255691	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		70255691	88882972	28	57728										
MAGI2	0	genome.wustl.edu	37	chr7	77789453	77789453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ggtctgcaggctgtgggaggCgaagccttcagggggagagg	21	7	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	7	77789453	77789453	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.2734	p.A912T	0.974	superfamily_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	155	0	0	118	51	30.18	-	-	-	T	77789453	C	T	77789453	3	4	670	1	0	0	0	0	1	0	0	0	9262	768	27	1	1661	1	MAGI2	7	77789453	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	7533762	77789453	81349210	29	57729										
GPC2	0	genome.wustl.edu	37	chr7	99773285	99773286	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	agaggcagagcaggtagtcaINSggggggaagctgtactgtgg							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	7	99773285	99773286	-	G	INS	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	frame_shift_ins	c.558_557	p.D187fs	0.978:1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	55	0	0	40	16	28.57	-	-	-	G	99773286	-	G	99773285	7	5	670	1	0	1	1	0	0	0	0	0	6648	175	7	0	1213	0	GPC2	7	99773285	Frame_Shift_Ins	INS	-	TCGA-D8-A140-01A-11D-A10Y-09	21983832	99773285	59365378	30	57730										
TSGA13	0	genome.wustl.edu	37	chr7	130357595	130357595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	taaaccattgttctcgcttgGatgtgggatcatccgacagt	10	9	2	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	7	130357595	130357595	G	A	SNP	TSGA13	ENST00000356588	human	ensembl	69_37n	-1	known	missense	c.509	p.S170F	0.002	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265	276	0	0	241	28	10.41	-	-	-	A	130357595	G	A	130357595	3	1	670	1	0	0	0	0	1	0	0	0	16715	1174	41	2	330	2	TSGA13	7	130357595	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	30584310	130357595	28781068	31	57731										
BLK	0	genome.wustl.edu	37	chr8	11418950	11418950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aatcatcgacagtgaatacaCggcccaagagggtaagcaca	10	10	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	8	11418950	11418950	C	T	SNP	BLK	ENST00000259089	human	ensembl	69_37n	1	known	missense	c.1169	p.T390M	0.911	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	109	0	0	28	22	44	-	-	-	T	11418950	C	T	11418950	3	4	670	1	0	0	0	0	1	0	0	0	1449	536	19	1	1207	1	BLK	8	11418950	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09		11418950	134945072	32	57732										
RP1	0	genome.wustl.edu	37	chr8	55537248	55537248	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	agtaagcacacatatgtcttCaagctcaaggtcccagattt	7	10	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	8	55537248	55537248	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.806	p.S269L	0.988	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	57	0	0	54	15	21.74	-	-	-	T	55537248	C	T	55537248	3	4	670	1	0	0	0	0	1	0	0	0	13618	838	29	2	816	2	RP1	8	55537248	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	44118298	55537248	90826774	33	57733										
AZIN1	0	genome.wustl.edu	37	chr8	103841546	103841546	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aatggctggcctctgaaaatCattaaaagcagatggttcat	9	7	3	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	8	103841546	103841546	C	T	SNP	AZIN1	ENST00000337198	human	ensembl	69_37n	-1	known	missense	c.1189	p.D397N	0.998	pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn/DAP/Arg_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	AZIN1	HGNC	ENSG00000155096	162	0	0	139	43	23.37	-	-	-	T	103841546	C	T	103841546	3	4	670	1	0	0	0	0	1	0	0	0	1246	826	29	2	165	2	AZIN1	8	103841546	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	48304298	103841546	42522476	34	57734										
RC3H2	0	genome.wustl.edu	37	chr9	125621114	125621114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	taataatgtcatctcgttggTacataggtgggcgccagatg	12	7	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	9	125621114	125621114	T	C	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	missense	c.2117	p.Y706C	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	137	0	0	97	41	29.71	-	-	-	C	125621114	T	C	125621114	3	2	670	1	0	0	0	0	1	0	0	0	13250	1638	57	5	1576	5	RC3H2	9	125621114	Missense_Mutation	SNP	T	TCGA-D8-A140-01A-11D-A10Y-09		125621114	15592317	35	57735										
CRB2	0	genome.wustl.edu	37	chr9	126125420	126125420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccaccatggggccacctgccGcaacctggccgatcgctacg	11	18	0	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	9	126125420	126125420	G	A	SNP	CRB2	ENST00000373631	human	ensembl	69_37n	1	known	missense	c.371	p.R124H	0.325	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204	23	0	0	9	6	40	-	-	-	A	126125420	G	A	126125420	3	1	670	1	0	0	0	0	1	0	0	0	3879	1087	38	1	377	1	CRB2	9	126125420	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	504306	126125420	15088011	36	57736										
FAM166A	0	genome.wustl.edu	37	chr9	140142146	140142147	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ggctccggcgtgaagagatcINSgtgtttctgagtagttgtca							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	9	140142146	140142147	-	G	INS	FAM166A	ENST00000344774	human	ensembl	69_37n	-1	known	frame_shift_ins	c.22_21	p.D7fs	0.001:0.162	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163	294	0	0	170	57	25.11	-	-	-	G	140142147	-	G	140142146	7	5	670	1	0	1	1	0	0	0	0	0	5521	884	31	0	959	0	FAM166A	9	140142146	Frame_Shift_Ins	INS	-	TCGA-D8-A140-01A-11D-A10Y-09	14016726	140142146	1071285	37	57737										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	150	0	0	75	32	29.91	-	-	-	G	8111514	-	G	8111513	7	5	670	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-D8-A140-01A-11D-A10Y-09		8111513	127423234	38	57738										
MLLT10	0	genome.wustl.edu	37	chr10	22016847	22016847	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gaagctcaccccgaggaagtCtctcgccacggtaagcgcta	11	14	2	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	22016847	22016847	C	T	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.2053	p.L685F	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	70	0	0	49	7	12.5	-	-	-	T	22016847	C	T	22016847	3	4	670	1	0	0	0	0	1	0	0	0	9697	913	32	2	2163	2	MLLT10	10	22016847	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	13905334	22016847	113517900	39	57739										
ANK3	0	genome.wustl.edu	37	chr10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tttgaaacagccatacctgtCatccagtcgatctagtaacc	6	12	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	61819102	61819102	C	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.12682	p.D4228N	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	218	0	0	154	48	23.76	-	-	-	T	61819102	C	T	61819102	3	4	670	1	0	0	0	0	1	0	0	0	622	826	29	2	463	2	ANK3	10	61819102	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	39802255	61819102	73715645	40	57740										
VPS26A	0	genome.wustl.edu	37	chr10	70892783	70892783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aacactatctcttctatgacGgagaatccgtttcaggaaag	8	9	3	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	70892783	70892783	G	A	SNP	VPS26A	ENST00000263559	human	ensembl	69_37n	1	known	missense	c.133	p.G45R	1.000	pfam_VPS26	pfam_VPS26	-	no_errors	VPS26A	HGNC	ENSG00000122958	150	0	0	84	53	38.41	-	-	-	A	70892783	G	A	70892783	3	1	670	1	0	0	0	0	1	0	0	0	17294	1117	39	1	139	1	VPS26A	10	70892783	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	9073681	70892783	64641964	41	57741										
PPAPDC1A	0	genome.wustl.edu	37	chr10	122278379	122278379	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cttgctttgaatggagtctgCacaaacactattaaattaat	6	7	1	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	122278379	122278379	C	A	SNP	PPAPDC1A	ENST00000398250	human	ensembl	69_37n	1	known	nonsense	c.291	p.C97*	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC1A	HGNC	ENSG00000203805	390	0	0	246	156	38.71	-	-	-	A	122278379	C	A	122278379	4	1	670	1	0	0	0	0	0	1	0	0	12366	718	25	4	305	4	PPAPDC1A	10	122278379	Nonsense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	51385596	122278379	13256368	42	57742										
KNDC1	0	genome.wustl.edu	37	chr10	135020748	135020748	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ttcagccccctggacgagtcCtcctcgctcatcttctacaa	6	17	4	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	10	135020748	135020748	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	silent	c.3693	p.S1231	0.999	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	25	0	0	16	8	33.33	-	-	-	T	135020748	C	T	135020748	2	4	670	1	0	0	0	0	0	0	0	1	8479	668	24	4		4	KNDC1	10	135020748	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	12742369	135020748	513999	43	57743										
OR5AS1	0	genome.wustl.edu	37	chr11	55798416	55798416	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ttttgtggctccaatatcgtCaatcattttttctgtgatat	6	7	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	11	55798416	55798416	C	T	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	silent	c.522	p.V174	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	239	0	0	232	82	25.95	-	-	-	T	55798416	C	T	55798416	2	4	670	1	0	0	0	0	0	0	0	1	11219	813	29	2		2	OR5AS1	11	55798416	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09		55798416	79208100	44	57744										
SLC22A25	0	genome.wustl.edu	37	chr11	62996956	62996956	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtcattgtcagggatagtgtCattgtccagtatatgaaccc	10	8	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	11	62996956	62996956	C	A	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	missense	c.169	p.D57Y	0.902	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	233	0	0	135	83	37.9	-	-	-	A	62996956	C	A	62996956	3	1	670	1	0	0	0	0	1	0	0	0	14543	826	29	2	1510	2	SLC22A25	11	62996956	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	7198540	62996956	72009560	45	57745										
RAB30	0	genome.wustl.edu	37	chr11	82708280	82708280	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccttacctgagtgaatcttcGgacgaggcacgtcttcccca	9	14	2	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	11	82708280	82708280	G	C	SNP	RAB30	ENST00000260056	human	ensembl	69_37n	-1	known	missense	c.79	p.R27G	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB30	HGNC	ENSG00000137502	179	0	0	96	105	51.98	-	-	-	C	82708280	G	C	82708280	3	2	670	1	0	0	0	0	1	0	0	0	13002	1124	39	3	548	3	RAB30	11	82708280	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	19711324	82708280	52298236	46	57746										
GPR162	0	genome.wustl.edu	37	chr12	6936007	6936007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tggaggacgaggaggacgagGaagaggctgaaggtgggggg	24	3	0	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	6936007	6936007	G	A	SNP	GPR162	ENST00000311268	human	ensembl	69_37n	1	known	missense	c.1405	p.E469K	0.089	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPCR_162,prints_GPCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510	83	0	0	53	21	28.38	-	-	-	A	6936007	G	A	6936007	3	1	670	1	0	0	0	0	1	0	0	0	6716	1175	41	2	1438	2	GPR162	12	6936007	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		6936007	126915888	47	57747										
YARS2	0	genome.wustl.edu	37	chr12	32908185	32908185	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ctcatgccctcggggctcttGagccgcagctgcacgctctg	12	16	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	32908185	32908185	G	A	SNP	YARS2	ENST00000324868	human	ensembl	69_37n	-1	known	silent	c.624	p.L208	0.006	pfam_aa-tRNA-synth_Ic,tigrfam_Tyr-tRNA-synth	pfam_aa-tRNA-synth_Ic,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS2	HGNC	ENSG00000139131	40	0	0	28	15	34.09	-	-	-	A	32908185	G	A	32908185	2	1	670	1	0	0	0	0	0	0	0	1	17565	1277	45	2		2	YARS2	12	32908185	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	25972178	32908185	100943710	48	57748										
KRT76	0	genome.wustl.edu	37	chr12	53167402	53167402	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aactcattctctgcggcagtGcgtttgttgatttcatcttc	8	10	4	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	53167402	53167402	G	A	SNP	KRT76	ENST00000332411	human	ensembl	69_37n	-1	known	silent	c.840	p.R280	0.977	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	168	0	0	87	43	32.82	-	-	-	A	53167402	G	A	53167402	2	1	670	1	0	0	0	0	0	0	0	1	8542	1306	46	4		4	KRT76	12	53167402	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	20259217	53167402	80684493	49	57749										
KRT18	0	genome.wustl.edu	37	chr12	53344579	53344579	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cagtctgtggagaacgacatCcatgggctccgcaaggtcat	12	11	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	53344579	53344579	C	A	SNP	KRT18	ENST00000388835	human	ensembl	69_37n	1	known	silent	c.546	p.I182	0.970	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	41	0	0	32	16	33.33	-	-	-	A	53344579	C	A	53344579	2	1	670	1	0	0	0	0	0	0	0	1	8508	845	30	2		2	KRT18	12	53344579	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	177177	53344579	80507316	50	57750										
PDE1B	0	genome.wustl.edu	37	chr12	54943667	54943667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtggctgagcatggagctgtCcccccgcagtcctccggaga	14	14	0	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	54943667	54943667	C	T	SNP	PDE1B	ENST00000243052	human	ensembl	69_37n	1	known	missense	c.11	p.S4F	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	34	0	0	22	16	42.11	-	-	-	T	54943667	C	T	54943667	3	4	670	1	0	0	0	0	1	0	0	0	11707	855	30	2	13	2	PDE1B	12	54943667	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	1599088	54943667	78908228	51	57751										
NUP107	0	genome.wustl.edu	37	chr12	69082816	69082816	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gactgcacggaaacagagtgCtcagaaaagagttttacgta	11	7	1	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	69082816	69082816	C	G	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.83	p.A28G	1.000	NULL	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	149	0	0	160	24	13.04	-	-	-	G	69082816	C	G	69082816	3	3	670	1	0	0	0	0	1	0	0	0	10826	797	28	4	89	4	NUP107	12	69082816	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	14139149	69082816	64769079	52	57752										
RAN	0	genome.wustl.edu	37	chr12	131359172	131359172	+	Frame_Shift_Del	DEL	G	G	-													0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ctggcatagagatctggtacGagtgtgtgaaaacatcccca							TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	12	131359172	131359172	G	-	DEL	RAN	ENST00000392369	human	ensembl	69_37n	1	known	frame_shift_del	c.329	p.R110fs	0.998	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAN	HGNC	ENSG00000132341	150	0	0	139	37	20.56	-	-	-	-	131359172	G	-	131359172	7	5	670	1	0	1	0	1	0	0	0	0	13107	1058	37	0	343	0	RAN	12	131359172	Frame_Shift_Del	DEL	G	TCGA-D8-A140-01A-11D-A10Y-09	62276356	131359172	2492723	53	57753										
CLDN10	0	genome.wustl.edu	37	chr13	96086159	96086159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gctctcgttgctgctaccacGtccaatgagtggaaagtgac	11	11	1	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	13	96086159	96086159	G	A	SNP	CLDN10	ENST00000376873	human	ensembl	69_37n	1	known	silent	c.72	p.T24	0.002	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin10	-	no_errors	CLDN10	HGNC	ENSG00000134873	136	0	0	118	31	20.67	-	-	-	A	96086159	G	A	96086159	2	1	670	1	0	0	0	0	0	0	0	1	3502	1132	40	1		1	CLDN10	13	96086159	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		96086159	19083719	54	57754										
DOCK9	0	genome.wustl.edu	37	chr13	99461377	99461377	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cttaaggaggaagaacttacCgctgccttaagaaagtaata	9	7	0	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	13	99461377	99461377	C	T	SNP	DOCK9	ENST00000376460	human	ensembl	69_37n	-1	known	silent	c.5373	p.A1791	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	75	0	0	35	12	25.53	-	-	-	T	99461377	C	T	99461377	2	4	670	1	0	0	0	0	0	0	0	1	4729	667	23	1		1	DOCK9	13	99461377	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	3375218	99461377	15708501	55	57755										
TMTC4	0	genome.wustl.edu	37	chr13	101278346	101278346	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ttacagcttcccggtagtatCtgatggcagctgtctggttg	12	9	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	13	101278346	101278346	C	T	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.1565	p.R522K	0.967	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	145	0	0	68	36	34.62	-	-	-	T	101278346	C	T	101278346	3	4	670	1	0	0	0	0	1	0	0	0	16358	913	32	2	745	2	TMTC4	13	101278346	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	1816969	101278346	13891532	56	57756										
DAOA	0	genome.wustl.edu	37	chr13	106142353	106142353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gcaggcagcctctagaacgaAtgtggacctgcaactacaac	10	12	1	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	13	106142353	106142353	A	G	SNP	DAOA	ENST00000375936	human	ensembl	69_37n	1	known	missense	c.385	p.M129V	0.005	NULL	NULL	-	no_errors	DAOA	HGNC	ENSG00000182346	100	0	0	75	32	29.91	-	-	-	G	106142353	A	G	106142353	3	3	670	1	0	0	0	0	1	0	0	0	4264	101	4	5	508	5	DAOA	13	106142353	Missense_Mutation	SNP	A	TCGA-D8-A140-01A-11D-A10Y-09	4864007	106142353	9027525	57	57757										
NPAS3	0	genome.wustl.edu	37	chr14	34269516	34269516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cagcagcatctggaactaccCgcccaaccgggagatctcca	9	16	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	14	34269516	34269516	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	69_37n	1	known	missense	c.2003	p.P668L	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS3	HGNC	ENSG00000151322	19	0	0	10	7	41.18	-	-	-	T	34269516	C	T	34269516	3	4	670	1	0	0	0	0	1	0	0	0	10636	652	23	1	2104	1	NPAS3	14	34269516	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09		34269516	73080024	58	57758										
PLEKHG3	0	genome.wustl.edu	37	chr14	65208367	65208367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gaaggaatcagcactctccaCccgagaccggctgttgctag	11	13	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	14	65208367	65208367	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	69_37n	1	known	missense	c.2132	p.T711I	0.943	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	11	0	0	7	7	50	-	-	-	T	65208367	C	T	65208367	3	4	670	1	0	0	0	0	1	0	0	0	12144	507	18	4	2014	4	PLEKHG3	14	65208367	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	30938851	65208367	42141173	59	57759										
KCNK13	0	genome.wustl.edu	37	chr14	90650490	90650490	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ctccggcgacagtaggaggaAaaatctttctgatcttttac	9	9	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	14	90650490	90650490	A	T	SNP	KCNK13	ENST00000282146	human	ensembl	69_37n	1	known	nonsense	c.370	p.K124*	1.000	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315	164	0	0	132	46	25.84	-	-	-	T	90650490	A	T	90650490	4	4	670	1	0	0	0	0	0	1	0	0	8115	15	1	5	376	5	KCNK13	14	90650490	Nonsense_Mutation	SNP	A	TCGA-D8-A140-01A-11D-A10Y-09	25442123	90650490	16699050	60	57760										
SLC12A6	0	genome.wustl.edu	37	chr15	34530451	34530451	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	accttgtgctgtttcagtagGaatggtagtagcataagcat	11	6	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	15	34530451	34530451	G	C	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.2757	p.F919L	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	204	2	0.97	119	87	42.23	-	-	-	C	34530451	G	C	34530451	3	2	670	1	0	0	0	0	1	0	0	0	14476	1165	41	2	692	2	SLC12A6	15	34530451	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		34530451	68000941	61	57761										
MFGE8	0	genome.wustl.edu	37	chr15	89449997	89449997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	acctgttacccacatcctccGcagcaggttcacctggacac	7	17	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	15	89449997	89449997	G	A	SNP	MFGE8	ENST00000268150	human	ensembl	69_37n	-1	known	missense	c.400	p.R134W	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,smart_EGF-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545	76	0	0	35	26	42.62	-	-	-	A	89449997	G	A	89449997	3	1	670	1	0	0	0	0	1	0	0	0	9591	1086	38	1	783	1	MFGE8	15	89449997	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	54919546	89449997	13081395	62	57762										
ZNF75A	0	genome.wustl.edu	37	chr16	3366955	3366955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aaagtgatctcctgtctagaGcaaggggaagagccatgggt	14	7	2	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	16	3366955	3366955	G	T	SNP	ZNF75A	ENST00000574298	human	ensembl	69_37n	1	known	missense	c.144	p.E48D	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086	146	0	0	85	34	28.57	-	-	-	T	3366955	G	T	3366955	3	4	670	1	0	0	0	0	1	0	0	0	18227	962	34	4	150	4	ZNF75A	16	3366955	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		3366955	86987798	63	57763										
GRIN2A	0	genome.wustl.edu	37	chr16	9934570	9934570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gacactgattcccgtttccaCaaagggcacagagaagtcca	9	12	0	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	16	9934570	9934570	C	A	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.1585	p.V529L	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	96	0	0	67	26	27.96	-	-	-	A	9934570	C	A	9934570	3	1	670	1	0	0	0	0	1	0	0	0	6830	478	17	4	2837	4	GRIN2A	16	9934570	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	6567615	9934570	80420183	64	57764										
COPS3	0	genome.wustl.edu	37	chr17	17163754	17163754	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aggggttgttggttgaatacActtgtgctaactcgtggtat	13	5	0	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	17	17163754	17163754	A	G	SNP	COPS3	ENST00000268717	human	ensembl	69_37n	-1	known	missense	c.797	p.V266A	1.000	pfam_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS3	HGNC	ENSG00000141030	353	0	0	240	134	35.64	-	-	-	G	17163754	A	G	17163754	3	3	670	1	0	0	0	0	1	0	0	0	3764	159	6	5	494	5	COPS3	17	17163754	Missense_Mutation	SNP	A	TCGA-D8-A140-01A-11D-A10Y-09		17163754	64031456	65	57765										
ALKBH5	0	genome.wustl.edu	37	chr17	18088015	18088015	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gaagcgcgggcccggccaggAgcgcctctacccgccgggcg	17	17	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	17	18088015	18088015	A	G	SNP	ALKBH5	ENST00000399138	human	ensembl	69_37n	1	known	missense	c.458	p.E153G	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542	17	0	0	16	9	36	-	-	-	G	18088015	A	G	18088015	3	3	670	1	0	0	0	0	1	0	0	0	530	304	11	5	460	5	ALKBH5	17	18088015	Missense_Mutation	SNP	A	TCGA-D8-A140-01A-11D-A10Y-09	924261	18088015	63107195	66	57766										
ULK2	0	genome.wustl.edu	37	chr17	19685246	19685246	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	atctggtccaccaccacactCtcctggatctggtacaagga	8	14	3	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	17	19685246	19685246	C	T	SNP	ULK2	ENST00000575432	human	ensembl	69_37n	-1	novel	missense	c.550	p.E184K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	ULK2	HGNC	ENSG00000083290	106	0	0	57	21	26.92	-	-	-	T	19685246	C	T	19685246	3	4	670	1	0	0	0	0	1	0	0	0	17073	912	32	2	535	2	ULK2	17	19685246	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	1597231	19685246	61509964	67	57767										
STAC2	0	genome.wustl.edu	37	chr17	37371076	37371076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	actcttctcctctggtcctgGcccttcactctctgctgggg	9	16	5	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	17	37371076	37371076	G	T	SNP	STAC2	ENST00000333461	human	ensembl	69_37n	-1	known	missense	c.811	p.P271T	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC2	HGNC	ENSG00000141750	98	0	0	141	28	16.57	-	-	-	T	37371076	G	T	37371076	3	4	670	1	0	0	0	0	1	0	0	0	15331	1203	42	4	444	4	STAC2	17	37371076	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	17685830	37371076	43824134	68	57768										
TTC25	0	genome.wustl.edu	37	chr17	40091945	40091945	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gctacaagctgaggcctgatCgggaattcagagttggcatt	13	8	1	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	17	40091945	40091945	C	A	SNP	TTC25	ENST00000377540	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	158	0	0	135	52	27.66	-	-	-	A	40091945	C	A	40091945	1	1	670	0	1	0	0	0	0	0	0	0	16790	875	31	3		3	TTC25	17	40091945	RNA	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	2720869	40091945	41103265	69	57769										
ZFR2	0	genome.wustl.edu	37	chr19	3834981	3834981	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ggaagggtcggaggctgggcGctagaaccacaaacacacac	14	11	0	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	3834981	3834981	G	A	SNP	ZFR2	ENST00000262961	human	ensembl	69_37n	-1	known	silent	c.54	p.S18	0.314	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278	21	0	0	9	13	59.09	-	-	-	A	3834981	G	A	3834981	2	1	670	1	0	0	0	0	0	0	0	1	17756	1101	38	1		1	ZFR2	19	3834981	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		3834981	55294002	70	57770										
SMARCA4	0	genome.wustl.edu	37	chr19	11113752	11113752	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gacctcccggtgaaggtgatCcacgtggagagtgggaagat	16	8	0	4			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	11113752	11113752	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	silent	c.1860	p.I620	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	75	0	0	36	21	36.84	-	-	-	T	11113752	C	T	11113752	2	4	670	1	0	0	0	0	0	0	0	1	14859	845	30	2		2	SMARCA4	19	11113752	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	7278771	11113752	48015231	71	57771										
NACC1	0	genome.wustl.edu	37	chr19	13248140	13248140	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	aactgccacgtcagcgcaggCacgcggcacaaggtcctact	11	15	1	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	13248140	13248140	C	T	SNP	NACC1	ENST00000292431	human	ensembl	69_37n	1	known	silent	c.1176	p.G392	1.000	NULL	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877	35	0	0	22	7	24.14	-	-	-	T	13248140	C	T	13248140	2	4	670	1	0	0	0	0	0	0	0	1	10207	697	25	4		4	NACC1	19	13248140	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	2134388	13248140	45880843	72	57772										
RYR1	0	genome.wustl.edu	37	chr19	38993592	38993592	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gtgcccatcctcaacgagttCgccaagatgccactcaaggt	9	14	2	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	38993592	38993592	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.7908	p.F2636	0.988	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	61	0	0	25	15	36.59	-	-	-	T	38993592	C	T	38993592	2	4	670	1	0	0	0	0	0	0	0	1	13854	883	31	1		1	RYR1	19	38993592	Silent	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	25745452	38993592	20135391	73	57773										
SIGLEC7	0	genome.wustl.edu	37	chr19	51647840	51647840	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccgctcctcagtgctcacccTcatcccacagccccagcacc	5	23	3	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	51647840	51647840	T	G	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.611	p.L204R	0.142	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	55	0	0	39	21	35	-	-	-	G	51647840	T	G	51647840	3	3	670	1	0	0	0	0	1	0	0	0	14402	1551	54	5	617	5	SIGLEC7	19	51647840	Missense_Mutation	SNP	T	TCGA-D8-A140-01A-11D-A10Y-09	12654248	51647840	7481143	74	57774										
ZNF347	0	genome.wustl.edu	37	chr19	53645625	53645625	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	tgggtcaaaagcactcctttGtaatttccttcagcatctct	6	11	3	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	19	53645625	53645625	G	T	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	nonsense	c.459	p.Y153*	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	141	0	0	102	60	37.04	-	-	-	T	53645625	G	T	53645625	4	4	670	1	0	0	0	0	0	1	0	0	17957	1372	48	4	2067	4	ZNF347	19	53645625	Nonsense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	1997785	53645625	5483358	75	57775										
ADARB1	0	genome.wustl.edu	37	chr21	46596033	46596033	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	catgctgctgagaaggccttGaggtctttcgttcagtttcc	11	10	2	2			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	21	46596033	46596033	G	A	SNP	ADARB1	ENST00000360697	human	ensembl	69_37n	1	known	silent	c.417	p.L139	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_A_deamin,pfam_Ds-RNA-bd,superfamily_Cytokine_IL1-like,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381	104	0	0	88	81	47.93	-	-	-	A	46596033	G	A	46596033	2	1	670	1	0	0	0	0	0	0	0	1	282	1281	45	2		2	ADARB1	21	46596033	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		46596033	1533862	76	57776										
GRIPAP1	0	genome.wustl.edu	37	chrX	48831588	48831588	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ttgtgcaagtgcatattcttGgtgagctgctcctccagcat	10	10	1	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	48831588	48831588	G	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	silent	c.2412	p.T804	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	109	0	0	55	14	20.29	-	-	-	A	48831588	G	A	48831588	2	1	670	1	0	0	0	0	0	0	0	1	6840	1335	47	4		4	GRIPAP1	23	48831588	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09		48831588	106438972	77	57777										
NUDT10	0	genome.wustl.edu	37	chrX	51076061	51076061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	agttaggccggctcctgggcGtcttcgaacagaaccaggac	13	12	1	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	51076061	51076061	G	A	SNP	NUDT10	ENST00000356450	human	ensembl	69_37n	1	known	missense	c.244	p.V82I	0.502	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT10	HGNC	ENSG00000122824	163	0	0	132	77	36.84	-	-	-	A	51076061	G	A	51076061	3	1	670	1	0	0	0	0	1	0	0	0	10799	1145	40	1	246	1	NUDT10	23	51076061	Missense_Mutation	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	2244473	51076061	104194499	78	57778										
PFKFB1	0	genome.wustl.edu	37	chrX	54978380	54978380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccagagtcacctccgatgcgGcctctgatgttgagttcact	10	13	3	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	54978380	54978380	G	A	SNP	PFKFB1	ENST00000375006	human	ensembl	69_37n	-1	known	silent	c.804	p.G268	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Zeta_toxin_domain,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB1	HGNC	ENSG00000158571	128	0	0	89	40	31.01	-	-	-	A	54978380	G	A	54978380	2	1	670	1	0	0	0	0	0	0	0	1	11834	1190	42	4		4	PFKFB1	23	54978380	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	3902319	54978380	100292180	79	57779										
DLG3	0	genome.wustl.edu	37	chrX	69717042	69717042	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gcttgcagagggagtgacatCcaacaccagtgacagcgaaa	12	10	0	3			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	69717042	69717042	C	A	SNP	DLG3	ENST00000194900	human	ensembl	69_37n	1	known	missense	c.1886	p.S629Y	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG3	HGNC	ENSG00000082458	301	0	0	184	110	37.29	-	-	-	A	69717042	C	A	69717042	3	1	670	1	0	0	0	0	1	0	0	0	4592	855	30	2	2128	2	DLG3	23	69717042	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	14738662	69717042	85553518	80	57780										
PHKA1	0	genome.wustl.edu	37	chrX	71823050	71823050	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	cgaaggactgagattcatcaGgccctctgtggcttcctcag	11	12	4	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	71823050	71823050	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	silent	c.2836	p.L946	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	211	0	0	146	66	31.13	-	-	-	A	71823050	G	A	71823050	2	1	670	1	0	0	0	0	0	0	0	1	11917	991	35	4		4	PHKA1	23	71823050	Silent	SNP	G	TCGA-D8-A140-01A-11D-A10Y-09	2106008	71823050	83447510	81	57781										
KIAA2022	0	genome.wustl.edu	37	chrX	73964215	73964215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ggcaggagacctctgggataCatcagggtctctttttgtgc	13	9	3	1			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	73964215	73964215	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.177	p.M59I	0.025	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	153	0	0	108	43	28.29	-	-	-	T	73964215	C	T	73964215	3	4	670	1	0	0	0	0	1	0	0	0	8321	478	17	4	4381	4	KIAA2022	23	73964215	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	2141165	73964215	81306345	82	57782										
CXorf57	0	genome.wustl.edu	37	chrX	105855830	105855830	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	ccttcagaaatagagcgcacCaggagaaaccagagaggcct	11	11	1	4			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	105855830	105855830	C	T	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	nonsense	c.520	p.Q174*	0.000	superfamily_NA-bd_OB-fold-like	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	41	0	0	42	19	31.15	-	-	-	T	105855830	C	T	105855830	4	4	670	1	0	0	0	0	0	1	0	0	4144	595	21	4	522	4	CXorf57	23	105855830	Nonsense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	31891615	105855830	49414730	83	57783										
IRS4	0	genome.wustl.edu	37	chrX	107978764	107978764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.107142857142857	9	0.554547847860328	1.31130332549547	0	1.39158720256662	0.000336519046978058	0.00940330365555831	0	gacgaccacgctggccacttCggtgttcagcctcacaaaca	9	15	2	0			TCGA-D8-A140-01A-11D-A10Y-09	TCGA-D8-A140-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	795f051e-01c4-4b49-b179-bd18ba24433c	3294b1ce-7e97-4973-86d3-71866f5a16c7	X	107978764	107978764	C	T	SNP	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	missense	c.811	p.E271K	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	52	0	0	30	15	33.33	-	-	-	T	107978764	C	T	107978764	3	4	670	1	0	0	0	0	1	0	0	0	7896	893	31	1	2966	1	IRS4	23	107978764	Missense_Mutation	SNP	C	TCGA-D8-A140-01A-11D-A10Y-09	2122934	107978764	47291796	84	57784										
KCNK2	0	genome.wustl.edu	37	chr1	215408369	215408369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaggaccctgtcagtgaacCacctgaccagcgagagggat	14	11	1	3			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	1	215408369	215408369	C	T	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.1162	p.H388Y	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	157	0	0	208	26	11.11	-	-	-	T	215408369	C	T	215408369	3	4	671	1	0	0	0	0	1	0	0	0	8120	594	21	4	1231	4	KCNK2	1	215408369	Missense_Mutation	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09		215408369	33842252	1	57785										
TRIM11	0	genome.wustl.edu	37	chr1	228582831	228582831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggcccagcacgcaggggcCggggtcaaagcgctctgggc	17	14	2	0			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	1	228582831	228582831	C	T	SNP	TRIM11	ENST00000284551	human	ensembl	69_37n	-1	known	missense	c.982	p.G328S	0.044	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC	ENSG00000154370	32	0	0	38	11	22.45	-	-	-	T	228582831	C	T	228582831	3	4	671	1	0	0	0	0	1	0	0	0	16583	652	23	1	428	1	TRIM11	1	228582831	Missense_Mutation	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09	13174462	228582831	20667790	2	57786										
EIF2AK3	0	genome.wustl.edu	37	chr2	88885398	88885398	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaaagcctgcgcacaataaaCgttgttgctatgatacaaaa	7	8	0	1			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	2	88885398	88885398	C	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	silent	c.1611	p.T537	0.884	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	255	0	0	182	31	14.55	-	-	-	A	88885398	C	A	88885398	2	1	671	1	0	0	0	0	0	0	0	1	5033	523	19	3		3	EIF2AK3	2	88885398	Silent	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09		88885398	154313975	3	57787										
HIST1H2AE	0	genome.wustl.edu	37	chr6	26217367	26217367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagtgtacctggcagcggtGctggaatatctgacggccga	14	11	1	1			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	6	26217367	26217367	G	A	SNP	HIST1H2AE	ENST00000303910	human	ensembl	69_37n	1	known	silent	c.165	p.V55	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274	73	0	0	112	22	16.42	-	-	-	A	26217367	G	A	26217367	2	1	671	1	0	0	0	0	0	0	0	1	7183	1306	46	4		4	HIST1H2AE	6	26217367	Silent	SNP	G	TCGA-D8-A141-01A-11D-A10Y-09		26217367	144897700	4	57788										
TRERF1	0	genome.wustl.edu	37	chr6	42227276	42227276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggtggtccccgaggacgcgCggggagcgcagctggctctg	19	12	1	0			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	6	42227276	42227276	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.2130	p.P710	0.811	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	40	0	0	44	9	16.67	-	-	-	T	42227276	C	T	42227276	2	4	671	1	0	0	0	0	0	0	0	1	16571	755	27	1		1	TRERF1	6	42227276	Silent	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09	16009909	42227276	128887791	5	57789										
COBL	0	genome.wustl.edu	37	chr7	51095504	51095504	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gactggtctctggacaacagGtttgaattttttcttcggcc	10	9	2	1			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	7	51095504	51095504	G	T	SNP	COBL	ENST00000395542	human	ensembl	69_37n	-1	known	missense	c.3535	p.P1179T	0.845	NULL	pfam_Cordon-bleu_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	321	2	0.62	303	48	13.64	-	-	-	T	51095504	G	T	51095504	3	4	671	1	0	0	0	0	1	0	0	0	3683	1261	44	4	512	4	COBL	7	51095504	Missense_Mutation	SNP	G	TCGA-D8-A141-01A-11D-A10Y-09		51095504	108043159	6	57790										
RECQL4	0	genome.wustl.edu	37	chr8	145739483	145739483	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagtgcacgcccatgcgctcCcgaagcacctgcaccagagg	11	17	0	1			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	8	145739483	145739483	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RECQL4	HGNC	ENSG00000160957	34	0	0	30	8	20	-	-	-	T	145739483	C	T	145739483	1	4	671	0	1	0	0	0	0	0	0	0	13285	610	22	4		4	RECQL4	8	145739483	RNA	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09		145739483	624539	7	57791										
THNSL1	0	genome.wustl.edu	37	chr10	25313006	25313006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggagtggaaaagcctagtagGagcaacctacgtagaaagag	14	6	0	2			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	10	25313006	25313006	G	T	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	missense	c.854	p.G285V	0.674	superfamily_PyrdxlP-dep_enz_bsu	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	228	0	0	193	33	14.6	-	-	-	T	25313006	G	T	25313006	3	4	671	1	0	0	0	0	1	0	0	0	15957	1174	41	2	856	2	THNSL1	10	25313006	Missense_Mutation	SNP	G	TCGA-D8-A141-01A-11D-A10Y-09		25313006	110221741	8	57792										
TRHDE	0	genome.wustl.edu	37	chr12	72956762	72956762	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atagaataataattacccaaCagcattttatctatgatatc	3	7	1	2			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	12	72956762	72956762	C	G	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.1849	p.Q617E	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	62	0	0	73	20	21.51	-	-	-	G	72956762	C	G	72956762	3	3	671	1	0	0	0	0	1	0	0	0	16575	479	17	4	1883	4	TRHDE	12	72956762	Missense_Mutation	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09		72956762	60895133	9	57793										
NEK3	0	genome.wustl.edu	37	chr13	52726763	52726763	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	ccttggacttgatatctctgTgtagcacacgtttcttgtga							TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	13	52726763	52726763	T	-	DEL	NEK3	ENST00000452082	human	ensembl	69_37n	-1	known	frame_shift_del	c.437	p.H146fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098	213	0	0	216	75	25.42	-	-	-	-	52726763	T	-	52726763	7	5	671	1	0	1	0	1	0	0	0	0	10397	1696	59	0	1194	0	NEK3	13	52726763	Frame_Shift_Del	DEL	T	TCGA-D8-A141-01A-11D-A10Y-09		52726763	62443115	10	57794										
SLC46A1	0	genome.wustl.edu	37	chr17	26732105	26732105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttggcataaccctgggcccGgagccagtggcccccgagga	15	14	0	0			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	17	26732105	26732105	G	A	SNP	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	missense	c.610	p.R204W	0.340	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	37	0	0	28	9	24.32	-	-	-	A	26732105	G	A	26732105	3	1	671	1	0	0	0	0	1	0	0	0	14733	1115	39	1	786	1	SLC46A1	17	26732105	Missense_Mutation	SNP	G	TCGA-D8-A141-01A-11D-A10Y-09		26732105	54463105	11	57795										
RUNX1	0	genome.wustl.edu	37	chr21	36252853	36252853	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagttttgacagataacgtaCctcttccacttcgaccgaca	6	12	1	2			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	21	36252853	36252853	C	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	splice_site	c.508+1	e4+1	1.000	-	-	-	no_errors	RUNX1	HGNC	ENSG00000159216	175	0	0	187	28	12.96	-	-	-	G	36252853	C	G	36252853	5	3	671	1	0	0	0	0	0	0	1	0	13832	521	18	4	986	4	RUNX1	21	36252853	Splice_Site	SNP	C	TCGA-D8-A141-01A-11D-A10Y-09		36252853	11877042	12	57796										
TLR8	0	genome.wustl.edu	37	chrX	12937272	12937272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagaagctatccttgtgatgAgaaaaagcaaaatgactcag	9	6	1	4			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	12937272	12937272	A	G	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.113	p.E38G	0.009	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	89	0	0	85	10	10.53	-	-	-	G	12937272	A	G	12937272	3	3	671	1	0	0	0	0	1	0	0	0	16052	304	11	5	119	5	TLR8	23	12937272	Missense_Mutation	SNP	A	TCGA-D8-A141-01A-11D-A10Y-09		12937272	142333288	13	57797										
GPKOW	0	genome.wustl.edu	37	chrX	48978773	48978773	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgcccggggttcgctgtctGccccttccccgctgggggtg	15	16	1	0			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	48978773	48978773	G	T	SNP	GPKOW	ENST00000156109	human	ensembl	69_37n	-1	known	missense	c.431	p.A144E	0.467	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	88	0	0	107	35	24.48	-	-	-	T	48978773	G	T	48978773	3	4	671	1	0	0	0	0	1	0	0	0	6663	1319	46	4	1035	4	GPKOW	23	48978773	Missense_Mutation	SNP	G	TCGA-D8-A141-01A-11D-A10Y-09	36041501	48978773	106291787	14	57798										
ZMYM3	0	genome.wustl.edu	37	chrX	70461089	70461089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caactcaccattttgagagaTagaattcatagaacttgaca	6	8	2	5			TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	70461089	70461089	T	C	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.3914	p.Y1305C	1.000	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	315	0	0	282	47	14.29	-	-	-	C	70461089	T	C	70461089	3	2	671	1	0	0	0	0	1	0	0	0	17797	1406	49	5	212	5	ZMYM3	23	70461089	Missense_Mutation	SNP	T	TCGA-D8-A141-01A-11D-A10Y-09	21482316	70461089	84809471	15	57799										
LRRC7	0	genome.wustl.edu	37	chr1	70446130	70446130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aataatgcattacaagtgttAcctggggtatgtaagttttt	9	4	0	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	70446130	70446130	A	G	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	silent	c.666	p.L222	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	436	0	0	326	43	11.56	-	-	-	G	70446130	A	G	70446130	2	3	672	1	0	0	0	0	0	0	0	1	9086	388	14	5		5	LRRC7	1	70446130	Silent	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09		70446130	178804491	1	57800										
LRRC40	0	genome.wustl.edu	37	chr1	70641557	70641557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tagtagtataatttcatctgGaacagattttaacttgttat	6	4	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	70641557	70641557	G	A	SNP	LRRC40	ENST00000370952	human	ensembl	69_37n	-1	known	missense	c.913	p.P305S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC40	HGNC	ENSG00000066557	180	0	0	208	31	12.97	-	-	-	A	70641557	G	A	70641557	3	1	672	1	0	0	0	0	1	0	0	0	9064	1174	41	2	931	2	LRRC40	1	70641557	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	195427	70641557	178609064	2	57801										
FDPS	0	genome.wustl.edu	37	chr1	155290277	155290277	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gagctggatctgccagcagtGttcttgcaatatgaggaaga	13	7	2	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	155290277	155290277	G	A	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	silent	c.1137	p.V379	0.001	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	39	0	0	92	103	52.82	-	-	-	A	155290277	G	A	155290277	2	1	672	1	0	0	0	0	0	0	0	1	5849	1364	48	4		4	FDPS	1	155290277	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	84648720	155290277	93960344	3	57802										
ZBTB41	0	genome.wustl.edu	37	chr1	197169544	197169544	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	acatttccttctgaagaatcTttatgatagcctagatggat	7	7	2	4			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	197169544	197169544	T	G	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	missense	c.60	p.K20N	0.998	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	82	0	0	73	76	51.01	-	-	-	G	197169544	T	G	197169544	3	3	672	1	0	0	0	0	1	0	0	0	17639	1606	56	5	2709	5	ZBTB41	1	197169544	Missense_Mutation	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09	41879267	197169544	52081077	4	57803										
INTS7	0	genome.wustl.edu	37	chr1	212148707	212148707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aaagctctttggccatgtcaTgattaccctaaaaacaaaaa	5	9	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	212148707	212148707	T	C	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.1616	p.H539R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	102	0	0	180	29	13.88	-	-	-	C	212148707	T	C	212148707	3	2	672	1	0	0	0	0	1	0	0	0	7837	1464	51	5	1304	5	INTS7	1	212148707	Missense_Mutation	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09	14979163	212148707	37101914	5	57804										
ABCB11	0	genome.wustl.edu	37	chr2	169826581	169826581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cagcacttcttgcaccatggCttcactctcattgtccagag	7	14	3	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	169826581	169826581	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.1783	p.A595S	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	139	0	0	283	40	12.38	-	-	-	A	169826581	C	A	169826581	3	1	672	1	0	0	0	0	1	0	0	0	42	797	28	4	2238	4	ABCB11	2	169826581	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		169826581	73372792	6	57805										
TTN	0	genome.wustl.edu	37	chr2	179396209	179396209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	agatctggggacctcttcatCtctgcgttgggaagcatagg	13	9	4	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	179396209	179396209	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.97429	p.D32477H	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	122	0	0	146	59	28.64	-	-	-	G	179396209	C	G	179396209	3	3	672	1	0	0	0	0	1	0	0	0	16832	913	32	2	2866	2	TTN	2	179396209	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	9569628	179396209	63803164	7	57806										
TTN	0	genome.wustl.edu	37	chr2	179569129	179569129	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ctgaagatgccgttcccatgCaggctctgttcatgtgatac	10	11	2	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	179569129	179569129	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.26236	p.A8746P	0.139	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	123	0	0	178	25	12.25	-	-	-	G	179569129	C	G	179569129	3	3	672	1	0	0	0	0	1	0	0	0	16832	710	25	4	74589	4	TTN	2	179569129	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	172920	179569129	63630244	8	57807										
NDUFA10	0	genome.wustl.edu	37	chr2	240954240	240954242	+	In_Frame_Del	DEL	GAT	GAT	-													0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tgggggggcaggtaatcgcaGatggtgacgctcttcacctc							TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	240954240	240954242	GAT	-	DEL	NDUFA10	ENST00000252711	human	ensembl	69_37n	-1	known	in_frame_del	c.585_583	p.I195in_frame_del	0.000:0.000:0.000	pfam_Deoxynucleoside_kinase,pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414	44	0	0	129	18	12.24	-	-	-	-	240954242	GAT	-	240954240	7	5	672	1	0	1	0	1	0	0	0	0	10332	932	33	0	506	0	NDUFA10	2	240954240	In_Frame_Del	DEL	GAT	TCGA-D8-A142-01A-11D-A10Y-09	61385111	240954240	2245133	9	57808										
C3orf19	0	genome.wustl.edu	37	chr3	14708387	14708387	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cttcagcgccagcaatgggaGgaagaagaaagagaggccct	14	9	1	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	14708387	14708387	G	A	SNP	C3orf19	ENST00000383794	human	ensembl	69_37n	1	known	silent	c.657	p.E219	0.958	NULL	NULL	-	no_errors	C3orf19	HGNC	ENSG00000154781	116	0	0	68	17	20	-	-	-	A	14708387	G	A	14708387	2	1	672	1	0	0	0	0	0	0	0	1	2232	991	35	4		4	C3orf19	3	14708387	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		14708387	183314043	10	57809										
FGD5	0	genome.wustl.edu	37	chr3	14862067	14862067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ccggctatgtcccagaaaccGtccctgaagaaaccggacct	9	15	0	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	14862067	14862067	G	A	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.1489	p.V497I	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	11	0	0	13	26	66.67	-	-	-	A	14862067	G	A	14862067	3	1	672	1	0	0	0	0	1	0	0	0	5882	1145	40	1	1491	1	FGD5	3	14862067	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	153680	14862067	183160363	11	57810										
ACTR8	0	genome.wustl.edu	37	chr3	53908256	53908256	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	acctgatctaaatgacaaaaAgtttctttaaggtgttgcag	8	6	2	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	53908256	53908256	A	C	SNP	ACTR8	ENST00000335754	human	ensembl	69_37n	-1	known	silent	c.1047	p.T349	0.645	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR8	HGNC	ENSG00000113812	74	0	0	82	18	18	-	-	-	C	53908256	A	C	53908256	2	2	672	1	0	0	0	0	0	0	0	1	217	59	3	5		5	ACTR8	3	53908256	Silent	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09	39046189	53908256	144114174	12	57811										
DPPA2	0	genome.wustl.edu	37	chr3	109027096	109027096	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gtcactgccttgcgtttcctCgaacatcgctgtaatctggt	9	12	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	109027096	109027096	C	G	SNP	DPPA2	ENST00000478945	human	ensembl	69_37n	-1	known	silent	c.441	p.S147	0.000	NULL	pfscan_SAP_DNA-bd	-	no_errors	DPPA2	HGNC	ENSG00000163530	194	0	0	320	92	22.33	-	-	-	G	109027096	C	G	109027096	2	3	672	1	0	0	0	0	0	0	0	1	4769	871	31	3		3	DPPA2	3	109027096	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	55118840	109027096	88995334	13	57812										
ZBTB49	0	genome.wustl.edu	37	chr4	4314784	4314784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gcaggcaggtaacttgcagaCtcacttacgacggcattctg	11	11	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	4314784	4314784	C	G	SNP	ZBTB49	ENST00000337872	human	ensembl	69_37n	1	known	missense	c.1319	p.T440S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	398	0	0	418	50	10.66	-	-	-	G	4314784	C	G	4314784	3	3	672	1	0	0	0	0	1	0	0	0	17646	565	20	4	1333	4	ZBTB49	4	4314784	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		4314784	186839492	14	57813										
GRIA2	0	genome.wustl.edu	37	chr4	158282695	158282695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	attttccacgtgaagaacccCagtaaatcttgcagtattga	7	9	1	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	158282695	158282695	C	T	SNP	GRIA2	ENST00000296526	human	ensembl	69_37n	1	known	missense	c.2297	p.P766L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	353	0	0	192	29	13.12	-	-	-	T	158282695	C	T	158282695	3	4	672	1	0	0	0	0	1	0	0	0	6819	594	21	4	2470	4	GRIA2	4	158282695	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	153967911	158282695	32871581	15	57814										
GALNT7	0	genome.wustl.edu	37	chr4	174223291	174223291	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ggtctccagatttggggtggTgaaaactttgagatctcata	12	6	2	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	174223291	174223291	T	C	SNP	GALNT7	ENST00000505308	human	ensembl	69_37n	1	novel	missense	c.632	p.V211A	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GALNT7	HGNC	ENSG00000109586	319	0	0	241	33	12	-	-	-	C	174223291	T	C	174223291	3	2	672	1	0	0	0	0	1	0	0	0	6268	1683	59	5	1268	5	GALNT7	4	174223291	Missense_Mutation	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09	15940596	174223291	16930985	16	57815										
CDH12	0	genome.wustl.edu	37	chr5	21752184	21752184	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aattttgttctcctcaatcaCttttgggtttctcagagccc	6	11	4	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	21752184	21752184	C	A	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	missense	c.2047	p.V683L	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	322	0	0	338	50	12.89	-	-	-	A	21752184	C	A	21752184	3	1	672	1	0	0	0	0	1	0	0	0	3127	565	20	4	341	4	CDH12	5	21752184	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		21752184	159163076	17	57816										
MTMR12	0	genome.wustl.edu	37	chr5	32233991	32233991	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	actgcaccgaccaatcccacAcggtgagcagattcaaaggc	9	14	1	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	32233991	32233991	A	C	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	missense	c.1562	p.V521G	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	128	1	0.78	186	148	44.18	-	-	-	C	32233991	A	C	32233991	3	2	672	1	0	0	0	0	1	0	0	0	10013	159	6	5	689	5	MTMR12	5	32233991	Missense_Mutation	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09	10481807	32233991	148681269	18	57817										
MYOT	0	genome.wustl.edu	37	chr5	137211662	137211662	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ttggaaagaaagctgaaatgCaaggacacccttcttcataa	8	8	2	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	137211662	137211662	C	A	SNP	MYOT	ENST00000239926	human	ensembl	69_37n	1	known	nonsense	c.501	p.C167*	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYOT	HGNC	ENSG00000120729	108	0	0	44	34	43.59	-	-	-	A	137211662	C	A	137211662	4	1	672	1	0	0	0	0	0	1	0	0	10166	718	25	4	507	4	MYOT	5	137211662	Nonsense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	104977671	137211662	43703598	19	57818										
ETF1	0	genome.wustl.edu	37	chr5	137844062	137844062	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cattccctggaaatctactcGgtaccgcaagatacctgggg	10	12	1	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	137844062	137844062	G	A	SNP	ETF1	ENST00000360541	human	ensembl	69_37n	-1	known	nonsense	c.1246	p.R416*	1.000	pfam_eRF1_3,tigrfam_Peptide_chain-rel_eRF1/aRF1	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705	91	0	0	105	18	14.63	-	-	-	A	137844062	G	A	137844062	4	1	672	1	0	0	0	0	0	1	0	0	5305	1124	39	1	71	1	ETF1	5	137844062	Nonsense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	632400	137844062	43071198	20	57819										
KLC4	0	genome.wustl.edu	37	chr6	43029294	43029294	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ggcccggcagcttcgccgttCtatggaaaacattgagctcg	12	12	1	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	43029294	43029294	C	T	SNP	KLC4	ENST00000259708	human	ensembl	69_37n	1	known	missense	c.275	p.S92F	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171	23	0	0	106	171	61.73	-	-	-	T	43029294	C	T	43029294	3	4	672	1	0	0	0	0	1	0	0	0	8389	913	32	2	281	2	KLC4	6	43029294	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		43029294	128085773	21	57820										
MEP1A	0	genome.wustl.edu	37	chr6	46787380	46787380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	catgctttgggattttaccaCgagcagtcaaggacggaccg	12	10	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	46787380	46787380	C	A	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	missense	c.495	p.H165Q	0.948	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	170	0	0	449	713	61.31	-	-	-	A	46787380	C	A	46787380	3	1	672	1	0	0	0	0	1	0	0	0	9546	535	19	3	521	3	MEP1A	6	46787380	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	3758086	46787380	124327687	22	57821										
LGSN	0	genome.wustl.edu	37	chr6	63989962	63989962	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aagaatttatttctctctgcAgctatttcttcattctccaa	3	10	5	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	63989962	63989962	A	T	SNP	LGSN	ENST00000370657	human	ensembl	69_37n	-1	known	silent	c.1494	p.A498	0.903	NULL	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	159	0	0	101	33	24.63	-	-	-	T	63989962	A	T	63989962	2	4	672	1	0	0	0	0	0	0	0	1	8814	175	7	5		5	LGSN	6	63989962	Silent	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09	17202582	63989962	107125105	23	57822										
KIAA1009	0	genome.wustl.edu	37	chr6	84904772	84904772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gtagggcttcaacgtcactaCtgctttgtccataagaaaca	8	10	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	84904772	84904772	C	T	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.857	p.S286N	0.971	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	324	0	0	258	53	16.99	-	-	-	T	84904772	C	T	84904772	3	4	672	1	0	0	0	0	1	0	0	0	8255	565	20	4	3426	4	KIAA1009	6	84904772	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	20914810	84904772	86210295	24	57823										
CDK19	0	genome.wustl.edu	37	chr6	110942402	110942402	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cacctggttcaggctggagtCctggctgtgctgcaaccctg	13	13	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	110942402	110942402	C	G	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.1282	p.D428H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	22	0	0	52	23	30.67	-	-	-	G	110942402	C	G	110942402	3	3	672	1	0	0	0	0	1	0	0	0	3164	855	30	2	234	2	CDK19	6	110942402	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	26037630	110942402	60172665	25	57824										
NKAIN2	0	genome.wustl.edu	37	chr6	124676437	124676437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ctgtctggctagtcctctggGttacgtggaatgtgtttgtt	13	7	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	124676437	124676437	G	A	SNP	NKAIN2	ENST00000368417	human	ensembl	69_37n	1	known	missense	c.217	p.V73I	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	467	0	0	499	105	17.36	-	-	-	A	124676437	G	A	124676437	3	1	672	1	0	0	0	0	1	0	0	0	10508	1261	44	4	227	4	NKAIN2	6	124676437	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	13734035	124676437	46438630	26	57825										
MYB	0	genome.wustl.edu	37	chr6	135520049	135520049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tttctctccatatttagttcTtaaacacttccagtaaccat	2	11	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	135520049	135520049	T	G	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	missense	c.1570	p.L524V	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	233	0	0	143	51	26.29	-	-	-	G	135520049	T	G	135520049	3	3	672	1	0	0	0	0	1	0	0	0	10079	1606	56	5	1612	5	MYB	6	135520049	Missense_Mutation	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09	10843612	135520049	35595018	27	57826										
SHPRH	0	genome.wustl.edu	37	chr6	146276440	146276440	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	taccctcactggaggagcacGtttccgtcggctgctcattt	10	13	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	146276440	146276440	G	C	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.19	p.R7G	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	68	0	0	143	19	11.73	-	-	-	C	146276440	G	C	146276440	3	2	672	1	0	0	0	0	1	0	0	0	14380	1145	40	3	5192	3	SHPRH	6	146276440	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	10756391	146276440	24838627	28	57827										
HDAC9	0	genome.wustl.edu	37	chr7	18833076	18833076	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tggcctcaggagagctgaagGtgaggtccgggttgcattaa	16	7	1	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	18833076	18833076	G	T	SNP	HDAC9	ENST00000441542	human	ensembl	69_37n	1	known	splice_site	c.2322+1	e16+1	1.000	-	-	-	no_errors	HDAC9	HGNC	ENSG00000048052	101	0	0	199	28	12.33	-	-	-	T	18833076	G	T	18833076	5	4	672	1	0	0	0	0	0	0	1	0	7065	1275	44	4	2436	4	HDAC9	7	18833076	Splice_Site	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		18833076	140305587	29	57828										
GLI3	0	genome.wustl.edu	37	chr7	42005086	42005086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tgcgggtggacgaccatgccGttgcagaacccaaaggcgcg	15	12	0	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	42005086	42005086	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	silent	c.3585	p.N1195	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	17	0	0	36	12	25	-	-	-	A	42005086	G	A	42005086	2	1	672	1	0	0	0	0	0	0	0	1	6491	1136	40	1		1	GLI3	7	42005086	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	23172010	42005086	117133577	30	57829										
ARPC1B	0	genome.wustl.edu	37	chr7	98988555	98988555	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aaggaggtggaggaacggccGgcacccaccccgtggggctc	17	13	0	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	98988555	98988555	G	A	SNP	ARPC1B	ENST00000252725	human	ensembl	69_37n	1	known	silent	c.540	p.P180	0.033	superfamily_WD40_repeat_dom,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1B	HGNC	ENSG00000130429	12	0	0	41	14	25.45	-	-	-	A	98988555	G	A	98988555	2	1	672	1	0	0	0	0	0	0	0	1	974	1103	39	1		1	ARPC1B	7	98988555	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	56983469	98988555	60150108	31	57830										
SCARA3	0	genome.wustl.edu	37	chr8	27516828	27516828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tgctcaagtacctggatgacGtgcggctctcctgcacgctg	12	13	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	27516828	27516828	G	A	SNP	SCARA3	ENST00000301904	human	ensembl	69_37n	1	known	missense	c.1141	p.V381M	1.000	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077	24	0	0	62	11	14.86	-	-	-	A	27516828	G	A	27516828	3	1	672	1	0	0	0	0	1	0	0	0	13966	1145	40	1	1159	1	SCARA3	8	27516828	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		27516828	118847194	32	57831										
UNC5D	0	genome.wustl.edu	37	chr8	35631900	35631900	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cccaaagccttcaaaattccCtactccatcagacagcggat	5	15	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	35631900	35631900	C	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	silent	c.2562	p.P854	1.000	superfamily_DEATH-like,smart_Death	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	143	0	0	166	33	16.58	-	-	-	A	35631900	C	A	35631900	2	1	672	1	0	0	0	0	0	0	0	1	17092	668	24	4		4	UNC5D	8	35631900	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	8115072	35631900	110732122	33	57832										
FGFR1	0	genome.wustl.edu	37	chr8	38275446	38275446	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ggtttgtccttgtccagcccGatagcctctgccaacaccac	8	16	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	38275446	38275446	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.1587	p.I529	0.060	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	104	0	0	104	90	46.15	-	-	-	A	38275446	G	A	38275446	2	1	672	1	0	0	0	0	0	0	0	1	5909	1048	37	1		1	FGFR1	8	38275446	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	2643546	38275446	108088576	34	57833										
ZHX1	0	genome.wustl.edu	37	chr8	124266845	124266845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tttgacactttgagaagttgGaactgctgctgttgctggct	12	7	0	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	124266845	124266845	G	A	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	missense	c.1342	p.P448S	0.595	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	104	0	0	184	21	10.24	-	-	-	A	124266845	G	A	124266845	3	1	672	1	0	0	0	0	1	0	0	0	17771	1174	41	2	1283	2	ZHX1	8	124266845	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	85991399	124266845	22097177	35	57834										
CACNA1B	0	genome.wustl.edu	37	chr9	140901245	140901245	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	acgggagaggactggaatgcAgtgatgtatcacgggatcga	16	6	1	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	9	140901245	140901245	A	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	silent	c.2004	p.A668	0.069	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	71	0	0	190	22	10.38	-	-	-	T	140901245	A	T	140901245	2	4	672	1	0	0	0	0	0	0	0	1	2564	175	7	5		5	CACNA1B	9	140901245	Silent	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09		140901245	312186	36	57835										
ENTPD1	0	genome.wustl.edu	37	chr10	97602252	97602252	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gcaggcatgcggttgctcagGtatagcagcatgtagggacc	15	9	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	10	97602252	97602252	G	A	SNP	ENTPD1	ENST00000371207	human	ensembl	69_37n	1	known	splice_site	c.449+1	e4+1	1.000	-	-	-	no_errors	ENTPD1	HGNC	ENSG00000138185	19	0	0	27	15	35.71	-	-	-	A	97602252	G	A	97602252	5	1	672	1	0	0	0	0	0	0	1	0	5175	1275	44	4	525	4	ENTPD1	10	97602252	Splice_Site	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		97602252	37932495	37	57836										
SIDT2	0	genome.wustl.edu	37	chr11	117066657	117066657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cgggcctcccggccgagccgGgtgggtacgtgaaggtagca	18	12	0	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	11	117066657	117066657	G	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.2525	p.G842V	0.002	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	54	0	0	241	28	10.41	-	-	-	T	117066657	G	T	117066657	3	4	672	1	0	0	0	0	1	0	0	0	14392	1247	43	4		4	SIDT2	11	117066657	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		117066657	17939859	38	57837										
NINJ2	0	genome.wustl.edu	37	chr12	675138	675138	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	atgaccacgagcaggacaccGatgaccacctgcaggagcag	12	13	0	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	675138	675138	G	A	SNP	NINJ2	ENST00000305108	human	ensembl	69_37n	-1	known	silent	c.378	p.I126	0.488	pfam_Ninjurin	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840	28	0	0	100	15	12.93	-	-	-	A	675138	G	A	675138	2	1	672	1	0	0	0	0	0	0	0	1	10491	1048	37	1		1	NINJ2	12	675138	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		675138	133176757	39	57838										
KERA	0	genome.wustl.edu	37	chr12	91449597	91449597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gtcccttgaggaattctggaCaccttatttctagctaattg	8	9	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	91449597	91449597	C	T	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	silent	c.462	p.V154	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	175	0	0	48	15	23.81	-	-	-	T	91449597	C	T	91449597	2	4	672	1	0	0	0	0	0	0	0	1	8196	465	17	4		4	KERA	12	91449597	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	90774459	91449597	42402298	40	57839										
DEPDC4	0	genome.wustl.edu	37	chr12	100660730	100660730	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tccggcagaagccatctctaCggttcctggaacttggcccg	11	14	1	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	100660730	100660730	C	G	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	missense	c.125	p.R42P	0.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	14	0	0	55	16	22.54	-	-	-	G	100660730	C	G	100660730	3	3	672	1	0	0	0	0	1	0	0	0	4477	536	19	3	779	3	DEPDC4	12	100660730	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	9211133	100660730	33191165	41	57840										
ATP6V0A2	0	genome.wustl.edu	37	chr12	124241429	124241429	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gttgacaccacctatggcgtCttgctactgctcccggttat	9	13	1	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	124241429	124241429	C	T	SNP	ATP6V0A2	ENST00000330342	human	ensembl	69_37n	1	known	silent	c.2361	p.V787	0.945	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344	108	0	0	186	123	39.81	-	-	-	T	124241429	C	T	124241429	2	4	672	1	0	0	0	0	0	0	0	1	1173	900	32	2		2	ATP6V0A2	12	124241429	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	23580699	124241429	9610466	42	57841										
AHNAK2	0	genome.wustl.edu	37	chr14	105417688	105417688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tggtcttgaggtccccctgcAtggaggggaggctcatgtcg	16	10	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	14	105417688	105417688	A	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.4100	p.M1367T	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	146	0	0	179	30	14.29	-	-	-	G	105417688	A	G	105417688	3	3	672	1	0	0	0	0	1	0	0	0	415	217	8	5	13291	5	AHNAK2	14	105417688	Missense_Mutation	SNP	A	TCGA-D8-A142-01A-11D-A10Y-09		105417688	1931852	43	57842										
FSD2	0	genome.wustl.edu	37	chr15	83437686	83437686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gggtcagctccacagtgtacGagtccacaggattcaggttc	12	11	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	15	83437686	83437686	G	A	SNP	FSD2	ENST00000334574	human	ensembl	69_37n	-1	known	missense	c.1499	p.S500L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD2	HGNC	ENSG00000186628	122	0	0	147	27	15.52	-	-	-	A	83437686	G	A	83437686	3	1	672	1	0	0	0	0	1	0	0	0	6120	1059	37	1	770	1	FSD2	15	83437686	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		83437686	19093706	44	57843										
NTHL1	0	genome.wustl.edu	37	chr16	2096293	2096293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	cccctcacctttctcactgtCcgagccctcataggccacac	5	20	3	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	16	2096293	2096293	C	T	SNP	NTHL1	ENST00000219066	human	ensembl	69_37n	-1	known	missense	c.214	p.D72N	0.034	NULL	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	24	0	0	94	77	45.03	-	-	-	T	2096293	C	T	2096293	3	4	672	1	0	0	0	0	1	0	0	0	10771	855	30	2	744	2	NTHL1	16	2096293	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		2096293	88258460	45	57844										
ABAT	0	genome.wustl.edu	37	chr16	8862091	8862091	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	agcatcctctccttcatgggCgcgttccatgggaggaccat	11	13	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	16	8862091	8862091	C	T	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	silent	c.645	p.G215	0.975	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	83	0	0	126	85	40.28	-	-	-	T	8862091	C	T	8862091	2	4	672	1	0	0	0	0	0	0	0	1	27	755	27	1		1	ABAT	16	8862091	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	6765798	8862091	81492662	46	57845										
SPNS3	0	genome.wustl.edu	37	chr17	4389850	4389850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gcgctgtacctggagagagaCgagacccgggcctggcagcc	16	13	0	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	4389850	4389850	C	T	SNP	SPNS3	ENST00000355530	human	ensembl	69_37n	1	known	silent	c.1422	p.D474	1.000	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS3	HGNC	ENSG00000182557	12	0	0	35	9	20.45	-	-	-	T	4389850	C	T	4389850	2	4	672	1	0	0	0	0	0	0	0	1	15167	535	19	1		1	SPNS3	17	4389850	Silent	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		4389850	76805360	47	57846										
TP53	0	genome.wustl.edu	37	chr17	7577106	7577106	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tgtgcgccggtctctcccagGacaggcacaaacacgcacct	10	16	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	7577106	7577106	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.832	p.P278A	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	70	0	0	98	101	50.75	-	-	-	C	7577106	G	C	7577106	3	2	672	1	0	0	0	0	1	0	0	0	16477	1174	41	2	454	2	TP53	17	7577106	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	3187256	7577106	73618104	48	57847										
TAOK1	0	genome.wustl.edu	37	chr17	27805320	27805320	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	agcagcaattacacatggtgCtcttcagggattagcctact	9	10	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	27805320	27805320	C	G	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	missense	c.404	p.A135G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	133	0	0	152	19	11.11	-	-	-	G	27805320	C	G	27805320	3	3	672	1	0	0	0	0	1	0	0	0	15639	797	28	4	422	4	TAOK1	17	27805320	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	20228214	27805320	53389890	49	57848										
APOH	0	genome.wustl.edu	37	chr17	64219815	64219815	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	tcaccttgcccacagacttaCgagcacagacaggaagctcc	8	15	1	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	64219815	64219815	C	T	SNP	APOH	ENST00000205948	human	ensembl	69_37n	-1	known	splice_site	c.415+1	e4+1	1.000	-	-	-	no_errors	APOH	HGNC	ENSG00000091583	51	0	0	103	87	45.55	-	-	-	T	64219815	C	T	64219815	5	4	672	1	0	0	0	0	0	0	1	0	806	550	19	1	641	1	APOH	17	64219815	Splice_Site	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	36414495	64219815	16975395	50	57849										
PTGER1	0	genome.wustl.edu	37	chr19	14583533	14583533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ctggcgcagtaggatgtacaCccaagggtccaggatctggt	14	10	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	14583533	14583533	C	T	SNP	PTGER1	ENST00000292513	human	ensembl	69_37n	-1	known	missense	c.1048	p.V350M	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP1_rcpt,prints_Prostanoid_rcpt,prints_Prostglndn_DP_rcpt,prints_Thbox_rcpt	-	no_errors	PTGER1	HGNC	ENSG00000160951	13	0	0	14	24	63.16	-	-	-	T	14583533	C	T	14583533	3	4	672	1	0	0	0	0	1	0	0	0	12823	507	18	4	164	4	PTGER1	19	14583533	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		14583533	44545450	51	57850										
CYP4F11	0	genome.wustl.edu	37	chr19	16035659	16035659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ttcaaacatgtccagtctggCgctgccctctgaggccaggc	11	14	3	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	16035659	16035659	C	T	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.559	p.A187T	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	70	0	0	81	87	51.79	-	-	-	T	16035659	C	T	16035659	3	4	672	1	0	0	0	0	1	0	0	0	4217	768	27	1	1047	1	CYP4F11	19	16035659	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	1452126	16035659	43093324	52	57851										
ZNF429	0	genome.wustl.edu	37	chr19	21720707	21720707	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ataagaaaattcatactagaGagaaaccttacaaatgtgaa	6	5	1	4			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	21720707	21720707	G	C	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.1852	p.E618Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	181	0	0	77	10	11.49	-	-	-	C	21720707	G	C	21720707	3	2	672	1	0	0	0	0	1	0	0	0	17998	943	33	2	1866	2	ZNF429	19	21720707	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	5685048	21720707	37408276	53	57852										
PSMC4	0	genome.wustl.edu	37	chr19	40487109	40487109	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ccttcaacagagtggaatgtTggctgtccgtgaaaaccgct	11	10	1	2			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	40487109	40487109	T	C	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.1154	p.L385S	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	89	0	0	157	89	36.18	-	-	-	C	40487109	T	C	40487109	3	2	672	1	0	0	0	0	1	0	0	0	12769	1821	63	5	1196	5	PSMC4	19	40487109	Missense_Mutation	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09	18766402	40487109	18641874	54	57853										
SIGLEC12	0	genome.wustl.edu	37	chr19	52001438	52001438	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	agggtcaggctcccccaggtCcagctcagcctggcaggggg	16	14	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	52001438	52001438	C	A	SNP	SIGLEC12	ENST00000291707	human	ensembl	69_37n	-1	known	missense	c.1239	p.W413C	0.084	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC12	HGNC	ENSG00000254521	28	0	0	73	12	14.12	-	-	-	A	52001438	C	A	52001438	3	1	672	1	0	0	0	0	1	0	0	0	14397	856	30	2	564	2	SIGLEC12	19	52001438	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	11514329	52001438	7127545	55	57854										
YWHAB	0	genome.wustl.edu	37	chr20	43530358	43530358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	gcgcccgccgctcttcctggCgtgtcatctccagcattgag	11	16	3	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	20	43530358	43530358	C	T	SNP	YWHAB	ENST00000353703	human	ensembl	69_37n	1	known	missense	c.184	p.R62C	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAB	HGNC	ENSG00000166913	55	0	0	100	32	23.7	-	-	-	T	43530358	C	T	43530358	3	4	672	1	0	0	0	0	1	0	0	0	17598	768	27	1	186	1	YWHAB	20	43530358	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09		43530358	19495162	56	57855										
RCAN1	0	genome.wustl.edu	37	chr21	35890532	35890532	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	ctgggagtggtgtcagtcgcTgcgtgcaattcatacttttc	12	9	2	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	21	35890532	35890532	T	G	SNP	RCAN1	ENST00000313806	human	ensembl	69_37n	-1	known	silent	c.609	p.A203	0.600	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN1	HGNC	ENSG00000159200	83	0	0	123	25	16.89	-	-	-	G	35890532	T	G	35890532	2	3	672	1	0	0	0	0	0	0	0	1	13251	1567	55	5		5	RCAN1	21	35890532	Silent	SNP	T	TCGA-D8-A142-01A-11D-A10Y-09		35890532	12239363	57	57856										
SLC5A4	0	genome.wustl.edu	37	chr22	32614516	32614516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	agagttcaggcatagtagccGtgaataaagaccaccacagc	10	10	1	3			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	22	32614516	32614516	G	A	SNP	SLC5A4	ENST00000266086	human	ensembl	69_37n	-1	known	silent	c.1965	p.H655	0.296	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191	42	0	0	85	24	22.02	-	-	-	A	32614516	G	A	32614516	2	1	672	1	0	0	0	0	0	0	0	1	14756	1136	40	1		1	SLC5A4	22	32614516	Silent	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		32614516	18690050	58	57857										
FRMPD4	0	genome.wustl.edu	37	chrX	12704307	12704307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	caaatcatttcgttttgactGcagcacttccattaaggtaa	6	9	1	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	12704307	12704307	G	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.665	p.C222F	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	201	0	0	208	33	13.69	-	-	-	T	12704307	G	T	12704307	3	4	672	1	0	0	0	0	1	0	0	0	6108	1319	46	4	691	4	FRMPD4	23	12704307	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09		12704307	142566253	59	57858										
AWAT1	0	genome.wustl.edu	37	chrX	69456923	69456923	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	acaaaggacctatcacctgaGcacaactacctcatgggggt	9	12	2	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	69456923	69456923	G	C	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	1	known	missense	c.285	p.E95D	0.881	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	47	0	0	50	32	39.02	-	-	-	C	69456923	G	C	69456923	3	2	672	1	0	0	0	0	1	0	0	0	1238	962	34	4	299	4	AWAT1	23	69456923	Missense_Mutation	SNP	G	TCGA-D8-A142-01A-11D-A10Y-09	56752616	69456923	85813637	60	57859										
GRIA3	0	genome.wustl.edu	37	chrX	122598837	122598837	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	aaagtccaagggaaagttcgCcttcctgctggagtcaacca	10	11	1	0			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	122598837	122598837	C	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.2198	p.A733D	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	134	1	0.74	159	19	10.61	-	-	-	A	122598837	C	A	122598837	3	1	672	1	0	0	0	0	1	0	0	0	6820	739	26	4	2248	4	GRIA3	23	122598837	Missense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	53141914	122598837	32671723	61	57860										
FAM58A	0	genome.wustl.edu	37	chrX	152860089	152860089	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	4	0.977248040227864	0.797174881007216	1.41317365269461	0.555175363558597	1	1	0	acgatgctgtcccggagttcCcagaagcgggagtccaattc	12	12	0	1			TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	152860089	152860089	C	T	SNP	FAM58A	ENST00000406277	human	ensembl	69_37n	-1	known	nonsense	c.339	p.W113*	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	FAM58A	HGNC	ENSG00000147382	26	0	0	71	14	16.47	-	-	-	T	152860089	C	T	152860089	4	4	672	1	0	0	0	0	0	1	0	0	5635	624	22	4	413	4	FAM58A	23	152860089	Nonsense_Mutation	SNP	C	TCGA-D8-A142-01A-11D-A10Y-09	30261252	152860089	2410471	62	57861										
ESPN	0	genome.wustl.edu	37	chr1	6511895	6511895	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	caccgcttctccctgcagccCgattcgccgctgccttctgt	8	19	2	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	6511895	6511895	C	T	SNP	ESPN	ENST00000434576	human	ensembl	69_37n	1	known	nonsense	c.94	p.R32*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ESPN	HGNC	ENSG00000187017	13	0	0	19	16	45.71	-	-	-	T	6511895	C	T	6511895	4	4	673	1	0	0	0	0	0	1	0	0	5291	639	23	1	2102	1	ESPN	1	6511895	Nonsense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		6511895	242738726	1	57862										
HSPG2	0	genome.wustl.edu	37	chr1	22180806	22180806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	tccagaatcagctggtgagaCctgggggagccgcagacggg	17	10	1	3			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	22180806	22180806	C	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.6319	p.V2107F	0.944	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	12	0	0	33	15	30.61	-	-	-	A	22180806	C	A	22180806	3	1	673	1	0	0	0	0	1	0	0	0	7484	507	18	4	7048	4	HSPG2	1	22180806	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	15668911	22180806	227069815	2	57863										
CAP1	0	genome.wustl.edu	37	chr1	40530205	40530205	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gccgccatgttttatacaaaCcgagtcctcaaagagtacaa	7	11	1	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	40530205	40530205	C	G	SNP	CAP1	ENST00000372792	human	ensembl	69_37n	1	known	missense	c.498	p.N166K	1.000	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236	134	0	0	209	55	20.83	-	-	-	G	40530205	C	G	40530205	3	3	673	1	0	0	0	0	1	0	0	0	2644	506	18	4	516	4	CAP1	1	40530205	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	18349399	40530205	208720416	3	57864										
FAM40A	0	genome.wustl.edu	37	chr1	110590491	110590492	+	Frame_Shift_Ins	INS	-	-	GTGA													0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gtcttgcctgaggagatgccINSgtgagtatcattctgtgaat							TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	110590491	110590492	-	GTGA	INS	FAM40A	ENST00000369795	human	ensembl	69_37n	1	known	frame_shift_ins	c.1661_1662	p.T555fs	1.000:1.000	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	89	0	0	174	33	15.94	-	-	-	GTGA	110590492	-	GTGA	110590491	7	5	673	1	0	1	1	0	0	0	0	0	5606	666	23	0	1719	0	FAM40A	1	110590491	Frame_Shift_Ins	INS	-	TCGA-D8-A143-01A-11D-A10Y-09	70060286	110590491	138660130	4	57865										
ADORA3	0	genome.wustl.edu	37	chr1	112031583	112031583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	tgtagtgggcattgtagttgCagatggcagaagccgtgtcc	15	7	0	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	112031583	112031583	C	T	SNP	ADORA3	ENST00000369716	human	ensembl	69_37n	-1	known	missense	c.521	p.C174Y	0.991	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Adeno_A3_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	ADORA3	HGNC	ENSG00000121933	145	1	0.68	302	101	25.06	-	-	-	T	112031583	C	T	112031583	3	4	673	1	0	0	0	0	1	0	0	0	329	710	25	4	538	4	ADORA3	1	112031583	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	1441092	112031583	137219038	5	57866										
C1orf114	0	genome.wustl.edu	37	chr1	169364427	169364427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gctctgccattttttccatcCgtttccttcttaaccatctg	4	14	3	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	169364427	169364427	C	T	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.1388	p.R463Q	0.891	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	153	0	0	358	78	17.89	-	-	-	T	169364427	C	T	169364427	3	4	673	1	0	0	0	0	1	0	0	0	2006	652	23	1	145	1	C1orf114	1	169364427	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	57332844	169364427	79886194	6	57867										
PRG4	0	genome.wustl.edu	37	chr1	186277245	186277245	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	actactcccaagaagcctgcCcccaaggagcttgcacccac	7	18	0	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	186277245	186277245	C	A	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	silent	c.2394	p.A798	0.093	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	295	0	0	758	170	18.28	-	-	-	A	186277245	C	A	186277245	2	1	673	1	0	0	0	0	0	0	0	1	12562	610	22	4		4	PRG4	1	186277245	Silent	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	16912818	186277245	62973376	7	57868										
OBSCN	0	genome.wustl.edu	37	chr1	228556454	228556454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	cctgatggtgcatcctgcccGggaagacattaaaatctgcg	11	11	1	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	228556454	228556454	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.19799	p.R6600L	0.987	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	61	0	0	267	63	19.09	-	-	-	T	228556454	G	T	228556454	3	4	673	1	0	0	0	0	1	0	0	0	10885	1116	39	3	21359	3	OBSCN	1	228556454	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09	42279209	228556454	20694167	8	57869										
KIF26B	0	genome.wustl.edu	37	chr1	245772787	245772787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	cagcctgcaggacggccagtCcccgggcgtgtacctctgtg	14	15	1	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	1	245772787	245772787	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.1871	p.S624F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	17	0	0	27	22	44.9	-	-	-	T	245772787	C	T	245772787	3	4	673	1	0	0	0	0	1	0	0	0	8347	855	30	2	1901	2	KIF26B	1	245772787	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	17216333	245772787	3477834	9	57870										
APOB	0	genome.wustl.edu	37	chr2	21228741	21228743	+	In_Frame_Del	DEL	CTT	CTT	-													0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	tttgaggaaccttaggtgtcCttctaaggatcctgcaatgt							TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	2	21228741	21228743	CTT	-	DEL	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	in_frame_del	c.10999_10997	p.E3666in_frame_del	1.000:0.999:1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	108	0	0	223	34	13.13	-	-	-	-	21228743	CTT	-	21228741	7	5	673	1	0	1	0	1	0	0	0	0	787	690	24	0	2708	0	APOB	2	21228741	In_Frame_Del	DEL	CTT	TCGA-D8-A143-01A-11D-A10Y-09		21228741	221970632	10	57871										
LRP1B	0	genome.wustl.edu	37	chr2	141130589	141130589	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	ccttttacctggctcacagcTtttctcatcttccccatatt	3	15	3	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	2	141130589	141130589	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.10756	p.S3586R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	243	1	0.41	268	153	36.34	-	-	-	G	141130589	T	G	141130589	3	3	673	1	0	0	0	0	1	0	0	0	9021	1609	56	5	3135	5	LRP1B	2	141130589	Missense_Mutation	SNP	T	TCGA-D8-A143-01A-11D-A10Y-09	119901848	141130589	102068784	11	57872										
FGD5	0	genome.wustl.edu	37	chr3	14860967	14860967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	tgctgctccgggtgcaggagCgctgagcagggagggtgagg	21	8	0	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	3	14860967	14860967	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	missense	c.389	p.A130V	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	13	0	0	12	13	52	-	-	-	T	14860967	C	T	14860967	3	4	673	1	0	0	0	0	1	0	0	0	5882	768	27	1	391	1	FGD5	3	14860967	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		14860967	183161463	12	57873										
C3orf52	0	genome.wustl.edu	37	chr3	111831902	111831902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	atatgatgagtgaggagttgGtgctgggcattttgctacag	15	4	0	3			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	3	111831902	111831902	G	T	SNP	C3orf52	ENST00000264848	human	ensembl	69_37n	1	known	missense	c.559	p.V187L	1.000	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529	284	0	0	586	152	20.6	-	-	-	T	111831902	G	T	111831902	3	4	673	1	0	0	0	0	1	0	0	0	2252	1261	44	4	577	4	C3orf52	3	111831902	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09	96970935	111831902	86190528	13	57874										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	94	0	0	132	86	39.45	-	-	-	G	178952085	A	G	178952085	3	3	673	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A143-01A-11D-A10Y-09	67120183	178952085	19070345	14	57875										
BMP2K	0	genome.wustl.edu	37	chr4	79832817	79832817	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	caatgaatttttaaccatctCagactccaaggagaacatta	5	9	1	3			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	4	79832817	79832817	C	A	SNP	BMP2K	ENST00000335016	human	ensembl	69_37n	1	known	nonsense	c.3116	p.S1039*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	25	0	0	18	9	33.33	-	-	-	A	79832817	C	A	79832817	4	1	673	1	0	0	0	0	0	1	0	0	1465	838	29	2	3216	2	BMP2K	4	79832817	Nonsense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		79832817	111321459	15	57876										
DSPP	0	genome.wustl.edu	37	chr4	88537096	88537096	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	agtgacagcagcaatagcagTgacagcagcgatagcagcga	13	9	0	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	4	88537096	88537096	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3282	p.S1094	0.001	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	14	0	0	34	31	47.69	-	-	-	C	88537096	T	C	88537096	2	2	673	1	0	0	0	0	0	0	0	1	4817	1693	59	5		5	DSPP	4	88537096	Silent	SNP	T	TCGA-D8-A143-01A-11D-A10Y-09	8704279	88537096	102617180	16	57877										
PRDM5	0	genome.wustl.edu	37	chr4	121739601	121739601	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gtttctggtgcaatgtctggAgatgctcagcaagaatatcc	11	8	3	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	4	121739601	121739601	A	T	SNP	PRDM5	ENST00000264808	human	ensembl	69_37n	-1	known	missense	c.557	p.L186H	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738	145	0	0	119	35	22.73	-	-	-	T	121739601	A	T	121739601	3	4	673	1	0	0	0	0	1	0	0	0	12541	304	11	5	1383	5	PRDM5	4	121739601	Missense_Mutation	SNP	A	TCGA-D8-A143-01A-11D-A10Y-09	33202505	121739601	69414675	17	57878										
NAA15	0	genome.wustl.edu	37	chr4	140280938	140280938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gctgcaaggtggatggatgaGgcccaggccttggacacagc	16	10	0	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	4	140280938	140280938	G	A	SNP	NAA15	ENST00000296543	human	ensembl	69_37n	1	known	silent	c.1299	p.E433	0.997	smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134	94	0	0	171	31	15.35	-	-	-	A	140280938	G	A	140280938	2	1	673	1	0	0	0	0	0	0	0	1	10190	991	35	4		4	NAA15	4	140280938	Silent	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09	18541337	140280938	50873338	18	57879										
PCDHA13	0	genome.wustl.edu	37	chr5	140263636	140263636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gccacgtggtggcgaaggtgCgcgcggtggacgccgattcg	19	11	0	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	5	140263636	140263636	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1783	p.R595C	0.193	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	19	0	0	39	23	37.1	-	-	-	T	140263636	C	T	140263636	3	4	673	1	0	0	0	0	1	0	0	0	11596	768	27	1	1785	1	PCDHA13	5	140263636	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		140263636	40651624	19	57880										
TINAG	0	genome.wustl.edu	37	chr6	54214608	54214608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	ggtctgatgggcgaggaaaaCggcatgccacgaagccatgt	15	9	1	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	6	54214608	54214608	C	T	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.994	p.R332W	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	72	0	0	138	68	33.01	-	-	-	T	54214608	C	T	54214608	3	4	673	1	0	0	0	0	1	0	0	0	16016	527	19	1	1020	1	TINAG	6	54214608	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		54214608	116900459	20	57881										
THSD7A	0	genome.wustl.edu	37	chr7	11464427	11464427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	acccataggtactggttgcaGtcactgtggcatgggacaac	12	10	1	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	7	11464427	11464427	G	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.3279	p.D1093E	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	88	0	0	141	61	30.2	-	-	-	T	11464427	G	T	11464427	3	4	673	1	0	0	0	0	1	0	0	0	15974	1020	36	4	1746	4	THSD7A	7	11464427	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09		11464427	147674236	21	57882										
BMS1	0	genome.wustl.edu	37	chr10	43326387	43326387	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	ggccaaggagcagcggcaccTgcacaataaagagcacttca	11	12	1	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	10	43326387	43326387	T	A	SNP	BMS1	ENST00000374518	human	ensembl	69_37n	1	known	missense	c.3692	p.L1231Q	0.956	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_ProtSyn_GTP-bd,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733	42	0	0	54	29	34.94	-	-	-	A	43326387	T	A	43326387	3	1	673	1	0	0	0	0	1	0	0	0	1477	1580	55	5	3778	5	BMS1	10	43326387	Missense_Mutation	SNP	T	TCGA-D8-A143-01A-11D-A10Y-09		43326387	92208360	22	57883										
BICC1	0	genome.wustl.edu	37	chr10	60560727	60560727	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	atgctggtgacttgaaacagAtgatgtgtccctccaaggtt	11	8	0	4			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	10	60560727	60560727	A	T	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.1936	p.M646L	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	105	0	0	138	24	14.81	-	-	-	T	60560727	A	T	60560727	3	4	673	1	0	0	0	0	1	0	0	0	1432	333	12	5	1990	5	BICC1	10	60560727	Missense_Mutation	SNP	A	TCGA-D8-A143-01A-11D-A10Y-09	17234340	60560727	74974020	23	57884										
TTC18	0	genome.wustl.edu	37	chr10	75114545	75114545	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gagtctgcctgctgatggcaCttgctccatatcaccaactg	9	13	2	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	10	75114545	75114545	C	G	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	missense	c.10	p.V4L	0.003	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	100	0	0	111	64	36.57	-	-	-	G	75114545	C	G	75114545	3	3	673	1	0	0	0	0	1	0	0	0	16782	565	20	4	3463	4	TTC18	10	75114545	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	14553818	75114545	60420202	24	57885										
OR2AG2	0	genome.wustl.edu	37	chr11	6789772	6789772	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gccaccatgatccagcagacTcttgggctcatgagggtcat	11	12	3	3			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	11	6789772	6789772	T	A	SNP	OR2AG2	ENST00000338569	human	ensembl	69_37n	-1	novel	missense	c.417	p.R139S	0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124	68	0	0	53	42	44.21	-	-	-	A	6789772	T	A	6789772	3	1	673	1	0	0	0	0	1	0	0	0	11058	1548	54	5	537	5	OR2AG2	11	6789772	Missense_Mutation	SNP	T	TCGA-D8-A143-01A-11D-A10Y-09		6789772	128216744	25	57886										
UBC	0	genome.wustl.edu	37	chr12	125397945	125397945	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	ggtgcgcccatcttccagctGctttccggcaaagatcaacc	9	15	2	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	12	125397945	125397945	G	C	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.373	p.Q125E	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	185	0	0	207	71	25.54	-	-	-	C	125397945	G	C	125397945	3	2	673	1	0	0	0	0	1	0	0	0	16939	1328	46	4	1688	4	UBC	12	125397945	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09		125397945	8453950	26	57887										
GPR133	0	genome.wustl.edu	37	chr12	131488811	131488811	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	cccacgggcagagcttcatcCagatcccccacgaggccttc	9	18	1	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	12	131488811	131488811	C	T	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	nonsense	c.1225	p.Q409*	0.106	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	39	0	0	69	28	28.87	-	-	-	T	131488811	C	T	131488811	4	4	673	1	0	0	0	0	0	1	0	0	6693	595	21	4	1267	4	GPR133	12	131488811	Nonsense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	6090866	131488811	2363084	27	57888										
CALB2	0	genome.wustl.edu	37	chr16	71408680	71408682	+	In_Frame_Del	DEL	GAA	GAA	-													0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gacaactttggagaaaagatGaaggagttcatgcagaagta							TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	16	71408680	71408682	GAA	-	DEL	CALB2	ENST00000302628	human	ensembl	69_37n	1	known	in_frame_del	c.204_206	p.K69in_frame_del	1.000:1.000:1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALB2	HGNC	ENSG00000172137	92	0	0	160	39	19.6	-	-	-	-	71408682	GAA	-	71408680	7	5	673	1	0	1	0	1	0	0	0	0	2599	1290	45	0	214	0	CALB2	16	71408680	In_Frame_Del	DEL	GAA	TCGA-D8-A143-01A-11D-A10Y-09		71408680	18946073	28	57889										
MYH13	0	genome.wustl.edu	37	chr17	10219317	10219317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	cactaaattgatcttctaccGtccggcacgttctttctatg	6	12	4	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	17	10219317	10219317	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.3764	p.T1255M	0.739	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	138	0	0	66	281	80.98	-	-	-	A	10219317	G	A	10219317	3	1	673	1	0	0	0	0	1	0	0	0	10104	1145	40	1	2108	1	MYH13	17	10219317	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09		10219317	70975893	29	57890										
C17orf64	0	genome.wustl.edu	37	chr17	58503620	58503620	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	ctgaagtacatgaagcagagCcttgtggtcctaggggacca	13	9	0	3			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	17	58503620	58503620	C	A	SNP	C17orf64	ENST00000269127	human	ensembl	69_37n	1	known	missense	c.252	p.S84R	1.000	NULL	NULL	-	no_errors	C17orf64	HGNC	ENSG00000141371	80	0	0	59	228	79.17	-	-	-	A	58503620	C	A	58503620	3	1	673	1	0	0	0	0	1	0	0	0	1887	738	26	4	262	4	C17orf64	17	58503620	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	48284303	58503620	22691590	30	57891										
FDXR	0	genome.wustl.edu	37	chr17	72860220	72860220	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gagtgtgggcaacaccaggcGggtggcagaggcctgggaag	20	8	0	1			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	17	72860220	72860220	G	C	SNP	FDXR	ENST00000455107	human	ensembl	69_37n	-1	known	missense	c.920	p.P307R	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513	14	0	0	38	7	15.56	-	-	-	C	72860220	G	C	72860220	3	2	673	1	0	0	0	0	1	0	0	0	5853	1131	39	3		3	FDXR	17	72860220	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09	14356600	72860220	8334990	31	57892										
MAST1	0	genome.wustl.edu	37	chr19	12980054	12980054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gtatggcttcacactgcgtgCcatccgtgtctacatgggtg	12	11	2	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	19	12980054	12980054	C	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.2948	p.A983D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	37	0	0	75	39	33.91	-	-	-	A	12980054	C	A	12980054	3	1	673	1	0	0	0	0	1	0	0	0	9395	739	26	4	3034	4	MAST1	19	12980054	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		12980054	46148929	32	57893										
ATP13A1	0	genome.wustl.edu	37	chr19	19766177	19766177	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	acggccagggacagctcgatGggcagctcaggaggcacgac	16	12	1	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	19	19766177	19766177	G	T	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	silent	c.1482	p.P494	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	55	0	0	130	74	36.27	-	-	-	T	19766177	G	T	19766177	2	4	673	1	0	0	0	0	0	0	0	1	1127	1335	47	4		4	ATP13A1	19	19766177	Silent	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09	6786123	19766177	39362806	33	57894										
PRX	0	genome.wustl.edu	37	chr19	40901124	40901124	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	cagccccagcccttgccctcCaactcagccacccctggcac	6	23	1	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	19	40901124	40901124	C	A	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.3135	p.L1045F	0.310	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	18	0	0	54	12	18.18	-	-	-	A	40901124	C	A	40901124	3	1	673	1	0	0	0	0	1	0	0	0	12722	593	21	4	1254	4	PRX	19	40901124	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	21134947	40901124	18227859	34	57895										
ZNF841	0	genome.wustl.edu	37	chr19	52569631	52569631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	agtatgaactctctgatgcaCtgcaagatgtgaatgttgac	10	7	1	5			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	19	52569631	52569631	C	T	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.1504	p.V502M	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	71	0	0	99	26	20.8	-	-	-	T	52569631	C	T	52569631	3	4	673	1	0	0	0	0	1	0	0	0	18282	565	20	4	1274	4	ZNF841	19	52569631	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09	11668507	52569631	6559352	35	57896										
MYH7B	0	genome.wustl.edu	37	chr20	33577577	33577577	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gtccatcctggaggaggaatGcatgttccccaaggcctcag	12	12	1	0			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	20	33577577	33577577	G	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.1748	p.C583F	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	37	0	0	78	18	18.75	-	-	-	T	33577577	G	T	33577577	3	4	673	1	0	0	0	0	1	0	0	0	10112	1319	46	4	1818	4	MYH7B	20	33577577	Missense_Mutation	SNP	G	TCGA-D8-A143-01A-11D-A10Y-09		33577577	29447943	36	57897										
DSCAM	0	genome.wustl.edu	37	chr21	41559154	41559154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	aattgtgcgtgctttgacatCtttgatctcaatttcgggag	10	7	2	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	21	41559154	41559154	C	G	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.2683	p.D895H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	155	0	0	264	35	11.71	-	-	-	G	41559154	C	G	41559154	3	3	673	1	0	0	0	0	1	0	0	0	4803	913	32	2	3435	2	DSCAM	21	41559154	Missense_Mutation	SNP	C	TCGA-D8-A143-01A-11D-A10Y-09		41559154	6570741	37	57898										
MAGEB3	0	genome.wustl.edu	37	chrX	30254466	30254466	+	Frame_Shift_Del	DEL	A	A	-													0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	agatatgctaaaaattgtccAaaaaagccataagaattgct							TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	X	30254466	30254466	A	-	DEL	MAGEB3	ENST00000361644	human	ensembl	69_37n	1	known	frame_shift_del	c.425	p.S144fs	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798	196	0	0	251	32	11.23	-	-	-	-	30254466	A	-	30254466	7	5	673	1	0	1	0	1	0	0	0	0	9248	130	5	0	427	0	MAGEB3	23	30254466	Frame_Shift_Del	DEL	A	TCGA-D8-A143-01A-11D-A10Y-09		30254466	125016094	38	57899										
PHF16	0	genome.wustl.edu	37	chrX	46887478	46887478	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	gggaatgatatggtgttctgTgataagtgtaacgtctgtgt	14	3	2	2			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	X	46887478	46887478	T	C	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	silent	c.660	p.C220	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	183	1	0.54	385	63	14.03	-	-	-	C	46887478	T	C	46887478	2	2	673	1	0	0	0	0	0	0	0	1	11901	1702	59	5		5	PHF16	23	46887478	Silent	SNP	T	TCGA-D8-A143-01A-11D-A10Y-09	16633012	46887478	108383082	39	57900										
MTM1	0	genome.wustl.edu	37	chrX	149818284	149818284	+	Frame_Shift_Del	DEL	A	A	-													0.025	1	1	0.530241935483871	1.69677419354839	0	1	1	0	catgttatgcgggaatctttAaaaaaagtgaaggacattgt							TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db1763d1-fcae-4a01-a0cb-3019e292aa10	a8bb9607-a942-4e01-a4e3-faeeff223d0d	X	149818284	149818284	A	-	DEL	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	frame_shift_del	c.963	p.V324fs	1.000	smart_Tyr_Pase_cat	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	104	0	0	186	38	16.67	-	-	-	-	149818284	A	-	149818284	7	5	673	1	0	1	0	1	0	0	0	0	10009	359	13	0	997	0	MTM1	23	149818284	Frame_Shift_Del	DEL	A	TCGA-D8-A143-01A-11D-A10Y-09	102930806	149818284	5452276	40	57901										
JAK1	0	genome.wustl.edu	37	chr1	65330610	65330611	+	Frame_Shift_Ins	INS	-	-	T													0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ttcttgtgtttattttccagINSttttttccgcttcagtttat							TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	1	65330610	65330611	-	T	INS	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1036_1035	p.L345fs	0.650:0.696	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	348	0	0	267	51	16.04	-	-	-	T	65330611	-	T	65330610	7	5	674	1	0	1	1	0	0	0	0	0	7991	1020	36	0	2500	0	JAK1	1	65330610	Frame_Shift_Ins	INS	-	TCGA-D8-A145-01A-11D-A10Y-09		65330610	183920011	1	57902										
KCNJ10	0	genome.wustl.edu	37	chr1	160012273	160012273	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ctgggcccattaggggccggCtttctgtctgagtggtctga	15	10	3	2			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	1	160012273	160012273	C	G	SNP	KCNJ10	ENST00000368089	human	ensembl	69_37n	-1	known	missense	c.50	p.S17T	1.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807	103	0	0	71	19	20.88	-	-	-	G	160012273	C	G	160012273	3	3	674	1	0	0	0	0	1	0	0	0	8098	797	28	4	1093	4	KCNJ10	1	160012273	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09	94681663	160012273	89238348	2	57903										
FMO2	0	genome.wustl.edu	37	chr1	171154975	171154975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	gaagatattggaggagtgtgGaggttcaaagtaagtgagat	16	1	1	2			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	1	171154975	171154975	G	C	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	missense	c.123	p.W41C	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	310	0	0	214	75	25.77	-	-	-	C	171154975	G	C	171154975	3	2	674	1	0	0	0	0	1	0	0	0	6001	1183	41	2	125	2	FMO2	1	171154975	Missense_Mutation	SNP	G	TCGA-D8-A145-01A-11D-A10Y-09	11142702	171154975	78095646	3	57904										
CEP170	0	genome.wustl.edu	37	chr1	243319545	243319545	+	Frame_Shift_Del	DEL	C	C	-													0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ggctatctcttctcgatgagCagtccaatctcggatgtagt							TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	1	243319545	243319545	C	-	DEL	CEP170	ENST00000366542	human	ensembl	69_37n	-1	known	frame_shift_del	c.3889	p.A1297fs	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702	80	0	0	72	20	21.28	-	-	-	-	243319545	C	-	243319545	7	5	674	1	0	1	0	1	0	0	0	0	3279	710	25	0	923	0	CEP170	1	243319545	Frame_Shift_Del	DEL	C	TCGA-D8-A145-01A-11D-A10Y-09	72164570	243319545	5931076	4	57905										
NEB	0	genome.wustl.edu	37	chr2	152425880	152425880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ccattccaagtcagccttgtAaacattctgtgaaaacaggg	8	10	2	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	2	152425880	152425880	A	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.17437	p.Y5813D	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	140	0	0	110	31	21.99	-	-	-	C	152425880	A	C	152425880	3	2	674	1	0	0	0	0	1	0	0	0	10374	362	13	5	8541	5	NEB	2	152425880	Missense_Mutation	SNP	A	TCGA-D8-A145-01A-11D-A10Y-09		152425880	90773493	5	57906										
ARPC2	0	genome.wustl.edu	37	chr2	219114602	219114602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	cttcctcaaggtgctgaaccGcgcacgcccagatgccgaga	11	15	1	3			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	2	219114602	219114602	G	A	SNP	ARPC2	ENST00000295685	human	ensembl	69_37n	1	known	missense	c.836	p.R279H	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466	185	0	0	151	22	12.57	-	-	-	A	219114602	G	A	219114602	3	1	674	1	0	0	0	0	1	0	0	0	975	1087	38	1	870	1	ARPC2	2	219114602	Missense_Mutation	SNP	G	TCGA-D8-A145-01A-11D-A10Y-09	66688722	219114602	24084771	6	57907										
CX3CR1	0	genome.wustl.edu	37	chr3	39307802	39307802	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	caggttcaggaggtaaatgtCggtgacactcttgggcttct	13	8	3	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	3	39307802	39307802	C	G	SNP	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	missense	c.295	p.D99H	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	227	0	0	196	41	17.3	-	-	-	G	39307802	C	G	39307802	3	3	674	1	0	0	0	0	1	0	0	0	4106	884	31	3	872	3	CX3CR1	3	39307802	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		39307802	158714628	7	57908										
DNAH1	0	genome.wustl.edu	37	chr3	52420266	52420266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ccaagaaggcacaagctattGctgacgatgcccagaaggac	11	11	0	3			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	3	52420266	52420266	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.8716	p.A2906T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	60	0	0	52	12	18.46	-	-	-	A	52420266	G	A	52420266	3	1	674	1	0	0	0	0	1	0	0	0	4633	1319	46	4	8930	4	DNAH1	3	52420266	Missense_Mutation	SNP	G	TCGA-D8-A145-01A-11D-A10Y-09	13112464	52420266	145602164	8	57909										
LRRC33	0	genome.wustl.edu	37	chr3	196387275	196387275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ggctgccttcgagctggagaCgctggacctgtctcacaacc	12	14	1	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	3	196387275	196387275	C	T	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	missense	c.761	p.T254M	0.074	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	50	0	0	48	7	12.73	-	-	-	T	196387275	C	T	196387275	3	4	674	1	0	0	0	0	1	0	0	0	9054	536	19	1	767	1	LRRC33	3	196387275	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09	143967009	196387275	1635155	9	57910										
SEC24B	0	genome.wustl.edu	37	chr4	110454805	110454805	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	aacttcatagaggatgtgctTggatatactaattttgcatc	8	6	1	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	4	110454805	110454805	T	G	SNP	SEC24B	ENST00000265175	human	ensembl	69_37n	1	known	silent	c.3552	p.L1184	0.788	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	287	0	0	274	38	12.18	-	-	-	G	110454805	T	G	110454805	2	3	674	1	0	0	0	0	0	0	0	1	14083	1799	63	5		5	SEC24B	4	110454805	Silent	SNP	T	TCGA-D8-A145-01A-11D-A10Y-09		110454805	80699471	10	57911										
NUP155	0	genome.wustl.edu	37	chr5	37327737	37327737	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	catgacaaacttaccccatgAtccgagaaaagtaaatgcaa	6	10	0	3			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	5	37327737	37327737	A	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2018	p.I673N	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	63	0	0	57	11	15.94	-	-	-	T	37327737	A	T	37327737	3	4	674	1	0	0	0	0	1	0	0	0	10829	333	12	5	2229	5	NUP155	5	37327737	Missense_Mutation	SNP	A	TCGA-D8-A145-01A-11D-A10Y-09		37327737	143587523	11	57912										
MCC	0	genome.wustl.edu	37	chr5	112363013	112363013	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	tgctgattaaagcgaagtttCattggtgtgtggcctggagt	14	5	1	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	5	112363013	112363013	C	T	SNP	MCC	ENST00000302475	human	ensembl	69_37n	-1	known	missense	c.2476	p.E826K	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	343	0	0	288	75	20.6	-	-	-	T	112363013	C	T	112363013	3	4	674	1	0	0	0	0	1	0	0	0	9444	835	29	2	17	2	MCC	5	112363013	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09	75035276	112363013	68552247	12	57913										
CCND3	0	genome.wustl.edu	37	chr6	41908208	41908208	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	tggaggccagcagcatgcagAccgcacccaggagctgcaac	13	14	0	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	6	41908208	41908208	A	T	SNP	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	missense	c.314	p.V105D	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	82	0	0	71	9	11.25	-	-	-	T	41908208	A	T	41908208	3	4	674	1	0	0	0	0	1	0	0	0	2947	275	10	5	580	5	CCND3	6	41908208	Missense_Mutation	SNP	A	TCGA-D8-A145-01A-11D-A10Y-09		41908208	129206859	13	57914										
XKR5	0	genome.wustl.edu	37	chr8	6668927	6668927	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ctgagatactgagggttcttCcagggaagcctgcactgggg	15	9	1	2			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	8	6668927	6668927	C	A	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	86	0	0	60	9	13.04	-	-	-	A	6668927	C	A	6668927	1	1	674	0	1	0	0	0	0	0	0	0	17531	855	30	2		2	XKR5	8	6668927	RNA	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		6668927	139695095	14	57915										
OR8H1	0	genome.wustl.edu	37	chr11	56058345	56058345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	tgaggtcaataaatgacaagTgagtaaggaaaaaatacatg	10	3	1	3			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	11	56058345	56058345	T	C	SNP	OR8H1	ENST00000313022	human	ensembl	69_37n	-1	known	missense	c.194	p.H65R	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8H1	HGNC	ENSG00000181693	350	1	0.28	312	36	10.26	-	-	-	C	56058345	T	C	56058345	3	2	674	1	0	0	0	0	1	0	0	0	11310	1696	59	5	743	5	OR8H1	11	56058345	Missense_Mutation	SNP	T	TCGA-D8-A145-01A-11D-A10Y-09		56058345	78948171	15	57916										
MVK	0	genome.wustl.edu	37	chr12	110034358	110034358	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	acctccctggacagccgagtCcagcaagccctggatggcct	11	16	0	0			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	12	110034358	110034358	C	G	SNP	MVK	ENST00000228510	human	ensembl	69_37n	1	known	silent	c.1167	p.V389	0.072	NULL	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921	56	0	0	42	5	10.42	-	-	-	G	110034358	C	G	110034358	2	3	674	1	0	0	0	0	0	0	0	1	10067	842	30	2		2	MVK	12	110034358	Silent	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		110034358	23817537	16	57917										
CHD9	0	genome.wustl.edu	37	chr16	53243700	53243700	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	aaaaaacaaaaacatgttctAagttaaaagagaagacaaaa	5	4	1	2			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	16	53243700	53243700	A	G	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.1759	p.K587E	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	36	0	0	28	7	20	-	-	-	G	53243700	A	G	53243700	3	3	674	1	0	0	0	0	1	0	0	0	3361	363	13	5	1765	5	CHD9	16	53243700	Missense_Mutation	SNP	A	TCGA-D8-A145-01A-11D-A10Y-09		53243700	37111053	17	57918										
RNF213	0	genome.wustl.edu	37	chr17	78264525	78264525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	atctgtgagctgcactacacCaggtgagcgtgtctgtaggc	13	10	2	2			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	17	78264525	78264525	C	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.1269	p.T423	0.161	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	146	0	0	124	25	16.78	-	-	-	T	78264525	C	T	78264525	2	4	674	1	0	0	0	0	0	0	0	1	13563	581	21	4		4	RNF213	17	78264525	Silent	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		78264525	2930685	18	57919										
LAMA3	0	genome.wustl.edu	37	chr18	21485570	21485570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	taaatgaagccaagatgacaCaaaagaagctaaagcaaggt	9	6	0	4			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	18	21485570	21485570	C	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.6700	p.Q2234K	0.511	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	92	0	0	64	17	20.99	-	-	-	A	21485570	C	A	21485570	3	1	674	1	0	0	0	0	1	0	0	0	8661	479	17	4	7081	4	LAMA3	18	21485570	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		21485570	56591678	19	57920										
MAPK4	0	genome.wustl.edu	37	chr18	48256050	48256050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	ggccgcccggccccggtggaCggcggcgccagcccccagtt	16	19	0	0			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	18	48256050	48256050	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	silent	c.1590	p.D530	0.048	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	13	0	0	19	7	26.92	-	-	-	T	48256050	C	T	48256050	2	4	674	1	0	0	0	0	0	0	0	1	9351	535	19	1		1	MAPK4	18	48256050	Silent	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09	26770480	48256050	29821198	20	57921										
ATP13A1	0	genome.wustl.edu	37	chr19	19762519	19762519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	tttctcggagggaggctgcaGgatcagcgtgtgggcctttt	16	8	2	0			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	19	19762519	19762519	G	A	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	silent	c.2314	p.L772	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	146	0	0	165	41	19.81	-	-	-	A	19762519	G	A	19762519	2	1	674	1	0	0	0	0	0	0	0	1	1127	991	35	4		4	ATP13A1	19	19762519	Silent	SNP	G	TCGA-D8-A145-01A-11D-A10Y-09		19762519	39366464	21	57922										
BCL2L1	0	genome.wustl.edu	37	chr20	30309575	30309575	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	tctacgctttccacgcacagTgccccgccgaaggagaaaaa	9	14	1	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	20	30309575	30309575	T	A	SNP	BCL2L1	ENST00000307677	human	ensembl	69_37n	-1	known	silent	c.447	p.A149	0.937	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH,tigrfam_Bcl2_reg	pfam_Bcl2_BH,pfam_Bcl2_BH4,smart_Bcl2_BH4,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,pfscan_Bcl2_BH4,prints_Apop_reg_BclX,prints_Bcl2_BH,tigrfam_Bcl2_reg	-	no_errors	BCL2L1	HGNC	ENSG00000171552	106	0	0	129	17	11.49	-	-	-	A	30309575	T	A	30309575	2	1	674	1	0	0	0	0	0	0	0	1	1371	1683	59	5		5	BCL2L1	20	30309575	Silent	SNP	T	TCGA-D8-A145-01A-11D-A10Y-09		30309575	32715945	22	57923										
TSHZ2	0	genome.wustl.edu	37	chr20	51870353	51870353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	caggcttccaaacgaagcacAcaattgcatggataaaatga	8	9	0	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	20	51870353	51870353	A	G	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.356	p.H119R	0.998	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	73	0	0	63	36	36.36	-	-	-	G	51870353	A	G	51870353	3	3	674	1	0	0	0	0	1	0	0	0	16720	159	6	5	362	5	TSHZ2	20	51870353	Missense_Mutation	SNP	A	TCGA-D8-A145-01A-11D-A10Y-09	21560778	51870353	11155167	23	57924										
CECR2	0	genome.wustl.edu	37	chr22	18022239	18022239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	caggaccctctcaccagcctCgcactctcggtcacgtgatg	9	17	3	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	22	18022239	18022239	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.2341	p.R781C	0.850	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	50	0	0	44	20	31.25	-	-	-	T	18022239	C	T	18022239	3	4	674	1	0	0	0	0	1	0	0	0	3235	884	31	1	2401	1	CECR2	22	18022239	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09		18022239	33282327	24	57925										
WWC3	0	genome.wustl.edu	37	chrX	10035453	10035453	+	Frame_Shift_Del	DEL	A	A	-													0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	aatctaccagattaagcagcAgcggttcgagctggcccagg							TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	X	10035453	10035453	A	-	DEL	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	frame_shift_del	c.143	p.Q48fs	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	81	0	0	79	17	17.17	-	-	-	-	10035453	A	-	10035453	7	5	674	1	0	1	0	1	0	0	0	0	17510	188	7	0	149	0	WWC3	23	10035453	Frame_Shift_Del	DEL	A	TCGA-D8-A145-01A-11D-A10Y-09		10035453	145235107	25	57926										
PHF8	0	genome.wustl.edu	37	chrX	54028588	54028588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	gttggcaaagggctccatacCgcgaaagatgtccaggatgt	13	9	0	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	X	54028588	54028588	C	T	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1249	p.G417S	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	198	0	0	193	38	16.38	-	-	-	T	54028588	C	T	54028588	3	4	674	1	0	0	0	0	1	0	0	0	11914	666	23	1	2155	1	PHF8	23	54028588	Missense_Mutation	SNP	C	TCGA-D8-A145-01A-11D-A10Y-09	43993135	54028588	101241972	26	57927										
SATL1	0	genome.wustl.edu	37	chrX	84348197	84348197	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	0.994628167771038	0.606971153846154	0	0.876736111111111	1	1	0	attgtaatacatacctgactTagcctcttcagcatttcagc	5	11	3	1			TCGA-D8-A145-01A-11D-A10Y-09	TCGA-D8-A145-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	af6ca646-499a-4e0a-a194-cacf72e5810b	dd892454-5f5c-492b-88ae-eb5a4c3bdb56	X	84348197	84348197	T	C	SNP	SATL1	ENST00000395409	human	ensembl	69_37n	-1	known	silent	c.1350	p.L450	0.974	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SATL1	HGNC	ENSG00000184788	112	0	0	114	17	12.78	-	-	-	C	84348197	T	C	84348197	2	2	674	1	0	0	0	0	0	0	0	1	13942	1769	61	5		5	SATL1	23	84348197	Silent	SNP	T	TCGA-D8-A145-01A-11D-A10Y-09	30319609	84348197	70922363	27	57928										
SLC5A6	0	genome.wustl.edu	37	chr2	27430388	27430388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	agccacgacaagcatggtagAgcccaatggcaagagagaga	13	9	0	3			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	2	27430388	27430388	A	C	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	missense	c.131	p.L44R	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	136	1	0.72	112	47	29.56	-	-	-	C	27430388	A	C	27430388	3	2	675	1	0	0	0	0	1	0	0	0	14758	304	11	5	1836	5	SLC5A6	2	27430388	Missense_Mutation	SNP	A	TCGA-D8-A146-01A-31D-A10Y-09		27430388	215768985	1	57929										
METTL5	0	genome.wustl.edu	37	chr2	170672017	170672017	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	atctatcttgattttccattCtgcagctttcttttgaacat	4	9	4	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	2	170672017	170672017	C	T	SNP	METTL5	ENST00000260953	human	ensembl	69_37n	-1	known	missense	c.511	p.E171K	1.000	pfam_RNA_MeTrfase_RsmD	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_RNA_cap_Gua-N2-MeTrfase,pfam_Methyltransf_11	-	no_errors	METTL5	HGNC	ENSG00000138382	524	0	0	527	69	11.58	-	-	-	T	170672017	C	T	170672017	3	4	675	1	0	0	0	0	1	0	0	0	9574	922	32	2	130	2	METTL5	2	170672017	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09	143241629	170672017	72527356	2	57930										
SCRN3	0	genome.wustl.edu	37	chr2	175264705	175264705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	atatgctgttgtcctgagtcGcccagcgtggttgtgggggg	17	8	0	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	2	175264705	175264705	G	A	SNP	SCRN3	ENST00000272732	human	ensembl	69_37n	1	known	missense	c.215	p.R72H	1.000	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306	170	0	0	214	89	29.08	-	-	-	A	175264705	G	A	175264705	3	1	675	1	0	0	0	0	1	0	0	0	14028	1087	38	1	221	1	SCRN3	2	175264705	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	4592688	175264705	67934668	3	57931										
UGT1A4	0	genome.wustl.edu	37	chr2	234680926	234680926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	agttacaaggagaacatcatGcgcctctccagccttcacaa	7	13	3	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	2	234680926	234680926	G	A	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	missense	c.1326	p.M442I	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	82	0	0	100	23	18.7	-	-	-	A	234680926	G	A	234680926	3	1	675	1	0	0	0	0	1	0	0	0	17044	1319	46	4	1344	4	UGT1A4	2	234680926	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	59416221	234680926	8518447	4	57932										
ITIH4	0	genome.wustl.edu	37	chr3	52863161	52863161	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	aagttggtgatgaaggctttCttgggcagctccatctggaa	13	7	2	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	3	52863161	52863161	C	T	SNP	ITIH4	ENST00000266041	human	ensembl	69_37n	-1	known	silent	c.225	p.K75	1.000	pfam_VIT,smart_VIT	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955	121	0	0	130	55	29.57	-	-	-	T	52863161	C	T	52863161	2	4	675	1	0	0	0	0	0	0	0	1	7960	912	32	2		2	ITIH4	3	52863161	Silent	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		52863161	145159269	5	57933										
COL6A5	0	genome.wustl.edu	37	chr3	130145079	130145079	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	gcattaaaggcatggcagggCagcctgtatattctgtatgt	12	7	1	0			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	3	130145079	130145079	C	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.5185	p.Q1729K	0.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	506	0	0	535	96	15.14	-	-	-	A	130145079	C	A	130145079	3	1	675	1	0	0	0	0	1	0	0	0	3732	711	25	4	5299	4	COL6A5	3	130145079	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09	77281918	130145079	67877351	6	57934										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	145	0	0	191	102	34.81	-	-	-	A	178936091	G	A	178936091	3	1	675	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	48791012	178936091	19086339	7	57935										
SOX30	0	genome.wustl.edu	37	chr5	157073789	157073789	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ggaaacacttagagggaatcGttttcgcttccctggacgag	12	9	0	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	5	157073789	157073789	G	A	SNP	SOX30	ENST00000265007	human	ensembl	69_37n	-1	known	nonsense	c.1243	p.R415*	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX30	HGNC	ENSG00000039600	245	0	0	275	60	17.91	-	-	-	A	157073789	G	A	157073789	4	1	675	1	0	0	0	0	0	1	0	0	15041	1153	40	1	1030	1	SOX30	5	157073789	Nonsense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09		157073789	23841471	8	57936										
FTSJD2	0	genome.wustl.edu	37	chr6	37429325	37429325	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	tccttgtgctctcatttcagGgtttctcggtggaggggcag	14	9	3	0			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	6	37429325	37429325	G	T	SNP	FTSJD2	ENST00000373451	human	ensembl	69_37n	1	known	missense	c.1096	p.G366C	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_Rsp5_WWP,pfscan_G_patch_dom	-	no_errors	FTSJD2	HGNC	ENSG00000137200	159	0	0	166	93	35.91	-	-	-	T	37429325	G	T	37429325	3	4	675	1	0	0	0	0	1	0	0	0	6140	1246	43	4	1134	4	FTSJD2	6	37429325	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09		37429325	133685742	9	57937										
EFHA2	0	genome.wustl.edu	37	chr8	16921636	16921636	+	Frame_Shift_Del	DEL	C	C	-													0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	tgaagacttagacctttatgCcacatctcgggagaggcgat							TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	8	16921636	16921636	C	-	DEL	EFHA2	ENST00000318063	human	ensembl	69_37n	1	known	frame_shift_del	c.425	p.T143fs	0.997	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA2	HGNC	ENSG00000155970	437	0	0	317	103	24.29	-	-	-	-	16921636	C	-	16921636	7	5	675	1	0	1	0	1	0	0	0	0	4979	739	26	0	431	0	EFHA2	8	16921636	Frame_Shift_Del	DEL	C	TCGA-D8-A146-01A-31D-A10Y-09		16921636	129442386	10	57938										
LRRTM3	0	genome.wustl.edu	37	chr10	68687255	68687255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	cctgggatataaccggatccGaagtttagccaggaatgtct	11	9	1	0			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	10	68687255	68687255	G	A	SNP	LRRTM3	ENST00000361320	human	ensembl	69_37n	1	known	missense	c.581	p.R194Q	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	136	0	0	137	42	23.46	-	-	-	A	68687255	G	A	68687255	3	1	675	1	0	0	0	0	1	0	0	0	9107	1058	37	1	587	1	LRRTM3	10	68687255	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09		68687255	66847492	11	57939										
SFXN4	0	genome.wustl.edu	37	chr10	120917220	120917220	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	caacggctcccgccattagtAatgatctttctagtggctta	8	11	2	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	10	120917220	120917220	A	C	SNP	SFXN4	ENST00000355697	human	ensembl	69_37n	-1	known	nonsense	c.497	p.L166*	0.006	pfam_Mtc	pfam_Mtc	-	no_errors	SFXN4	HGNC	ENSG00000183605	251	1	0.39	247	71	22.33	-	-	-	C	120917220	A	C	120917220	4	2	675	1	0	0	0	0	0	1	0	0	14285	372	13	5	540	5	SFXN4	10	120917220	Nonsense_Mutation	SNP	A	TCGA-D8-A146-01A-31D-A10Y-09	52229965	120917220	14617527	12	57940										
CELF1	0	genome.wustl.edu	37	chr11	47498507	47498507	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ctgctagagctaggtgaggaCcctgctattagaaagcaagg	13	8	0	3			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	11	47498507	47498507	C	A	SNP	CELF1	ENST00000532048	human	ensembl	69_37n	-1	known	silent	c.972	p.G324	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187	122	0	0	134	19	12.42	-	-	-	A	47498507	C	A	47498507	2	1	675	1	0	0	0	0	0	0	0	1	3244	521	18	4		4	CELF1	11	47498507	Silent	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		47498507	87508009	13	57941										
PITPNM1	0	genome.wustl.edu	37	chr11	67264729	67264729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ggcgggcatcacagttttgcGcagagccagcaccaggccca	13	14	1	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	11	67264729	67264729	G	A	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.2119	p.R707C	1.000	pfam_DDHD,pfscan_DDHD	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	41	0	0	46	17	26.98	-	-	-	A	67264729	G	A	67264729	3	1	675	1	0	0	0	0	1	0	0	0	12024	1087	38	1	1659	1	PITPNM1	11	67264729	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	19766222	67264729	67741787	14	57942										
USP15	0	genome.wustl.edu	37	chr12	62786084	62786084	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	catgaaagtgtggagtataaAcctcctaaaaaaccctttgt	7	8	0	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	12	62786084	62786084	A	G	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	silent	c.2337	p.K779	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	230	0	0	161	64	28.32	-	-	-	G	62786084	A	G	62786084	2	3	675	1	0	0	0	0	0	0	0	1	17143	40	2	5		5	USP15	12	62786084	Silent	SNP	A	TCGA-D8-A146-01A-31D-A10Y-09		62786084	71065811	15	57943										
COG3	0	genome.wustl.edu	37	chr13	46054421	46054421	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ctgtgaacagctcctaaaagAacaggtaatttggagtaaga	10	6	0	3			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	13	46054421	46054421	A	G	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	missense	c.545	p.E182G	1.000	pfam_COG_su3	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	289	1	0.34	225	30	11.76	-	-	-	G	46054421	A	G	46054421	3	3	675	1	0	0	0	0	1	0	0	0	3689	246	9	5	559	5	COG3	13	46054421	Missense_Mutation	SNP	A	TCGA-D8-A146-01A-31D-A10Y-09		46054421	69115457	16	57944										
DNAH3	0	genome.wustl.edu	37	chr16	20994169	20994169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	tgatcagcgaagggaacatcCgcaggcggttcctgaaggca	14	10	1	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	16	20994169	20994169	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.7733	p.R2578Q	0.964	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	89	0	0	182	27	12.92	-	-	-	T	20994169	C	T	20994169	3	4	675	1	0	0	0	0	1	0	0	0	4639	652	23	1	4672	1	DNAH3	16	20994169	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		20994169	69360584	17	57945										
ACTG1	0	genome.wustl.edu	37	chr17	79478289	79478289	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ggtgatgacctggccatcggGcagctcgtagctcttctcca	12	13	2	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	17	79478289	79478289	G	C	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.727	p.P243A	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	25	0	0	56	16	21.92	-	-	-	C	79478289	G	C	79478289	3	2	675	1	0	0	0	0	1	0	0	0	196	1203	42	4	412	4	ACTG1	17	79478289	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09		79478289	1716921	18	57946										
C17orf62	0	genome.wustl.edu	37	chr17	80401964	80401964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	tcaaggcagtgcagctccagGaagctggtgatgagcttggc	15	9	1	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	17	80401964	80401964	G	A	SNP	C17orf62	ENST00000336995	human	ensembl	69_37n	-1	known	missense	c.35	p.S12F	1.000	NULL	NULL	-	no_errors	C17orf62	HGNC	ENSG00000178927	58	0	0	44	21	32.31	-	-	-	A	80401964	G	A	80401964	3	1	675	1	0	0	0	0	1	0	0	0	1885	1165	41	2	87	2	C17orf62	17	80401964	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	923675	80401964	793246	19	57947										
ZNF181	0	genome.wustl.edu	37	chr19	35232612	35232612	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	cagaaatgcaggaaatccttCaaccagcttgaatcactgaa	7	10	2	3			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	19	35232612	35232612	C	T	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	silent	c.1326	p.F442	0.170	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	64	0	0	165	49	22.9	-	-	-	T	35232612	C	T	35232612	2	4	675	1	0	0	0	0	0	0	0	1	17845	825	29	2		2	ZNF181	19	35232612	Silent	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		35232612	23896371	20	57948										
PPFIA3	0	genome.wustl.edu	37	chr19	49643310	49643310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	tggcaagaaagagaagggacGaatgggacccccaggccggg	17	9	0	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	19	49643310	49643310	G	A	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	missense	c.2333	p.R778Q	0.962	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	118	0	0	168	24	12.5	-	-	-	A	49643310	G	A	49643310	3	1	675	1	0	0	0	0	1	0	0	0	12384	1058	37	1	2399	1	PPFIA3	19	49643310	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	14410698	49643310	9485673	21	57949										
ZNF587	0	genome.wustl.edu	37	chr19	58370865	58370865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ggaatgtgggaaatcttttcGtcagaagttctgctttatta	10	5	3	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	19	58370865	58370865	G	A	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.1085	p.R362H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	116	0	0	356	92	20.54	-	-	-	A	58370865	G	A	58370865	3	1	675	1	0	0	0	0	1	0	0	0	18116	1145	40	1	1095	1	ZNF587	19	58370865	Missense_Mutation	SNP	G	TCGA-D8-A146-01A-31D-A10Y-09	8727555	58370865	758118	22	57950										
SLC12A5	0	genome.wustl.edu	37	chr20	44680375	44680375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ctgccaggtggtgatctcctCcaacttgcgtgatggcgtgt	13	11	1	2			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	20	44680375	44680375	C	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2312	p.S771F	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	119	0	0	148	42	22.11	-	-	-	T	44680375	C	T	44680375	3	4	675	1	0	0	0	0	1	0	0	0	14475	855	30	2	2438	2	SLC12A5	20	44680375	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		44680375	18345145	23	57951										
ZNFX1	0	genome.wustl.edu	37	chr20	47863858	47863858	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	aggttgttggccgtgtcagaCcaggcagcatgctgggctcc	15	11	1	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	20	47863858	47863858	C	T	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	nonsense	c.5703	p.W1901*	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	173	0	0	184	117	38.74	-	-	-	T	47863858	C	T	47863858	4	4	675	1	0	0	0	0	0	1	0	0	18298	508	18	4	57	4	ZNFX1	20	47863858	Nonsense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09	3183483	47863858	15161662	24	57952										
NPTXR	0	genome.wustl.edu	37	chr22	39218663	39218663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	cgaaggcagcctttgttgcaCccccaaaggcctccaccaac	8	17	0	0			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	22	39218663	39218663	C	T	SNP	NPTXR	ENST00000333039	human	ensembl	69_37n	-1	known	missense	c.1454	p.G485D	1.000	superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	26	0	0	26	12	31.58	-	-	-	T	39218663	C	T	39218663	3	4	675	1	0	0	0	0	1	0	0	0	10677	507	18	4	52	4	NPTXR	22	39218663	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09		39218663	12085903	25	57953										
KIAA2022	0	genome.wustl.edu	37	chrX	73961112	73961112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	ctcttggaacccctttagtgTtcctagtgtcttcatactct	6	12	4	0			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	X	73961112	73961112	T	C	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3280	p.T1094A	0.258	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	185	0	0	201	93	31.42	-	-	-	C	73961112	T	C	73961112	3	2	675	1	0	0	0	0	1	0	0	0	8321	1725	60	5	1278	5	KIAA2022	23	73961112	Missense_Mutation	SNP	T	TCGA-D8-A146-01A-31D-A10Y-09		73961112	81309448	26	57954										
CXorf40B	0	genome.wustl.edu	37	chrX	149101992	149101992	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	cggcgatggtacagttccgcTggctgctcagcagaggacgc	15	12	1	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	X	149101992	149101992	T	C	SNP	CXorf40B	ENST00000355203	human	ensembl	69_37n	-1	known	missense	c.101	p.Q34R	0.005	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40B	HGNC	ENSG00000197021	148	0	0	195	72	26.87	-	-	-	C	149101992	T	C	149101992	3	2	675	1	0	0	0	0	1	0	0	0	4140	1580	55	5	383	5	CXorf40B	23	149101992	Missense_Mutation	SNP	T	TCGA-D8-A146-01A-31D-A10Y-09	75140880	149101992	6168568	27	57955										
MAMLD1	0	genome.wustl.edu	37	chrX	149638546	149638546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.541331764953536	1.62393162393162	0	1.71945701357466	0.0285714285714286	0.251737451737452	0	gtcacacttggagagcctggCttccagcaaggagtttgctt	12	10	1	1			TCGA-D8-A146-01A-31D-A10Y-09	TCGA-D8-A146-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9a7548dc-fc79-4ad4-a324-0e9f63c91a20	6d63e128-669b-4ac6-b2d3-10f6d7cf82d1	X	149638546	149638546	C	T	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	missense	c.626	p.A209V	0.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	129	0	0	105	12	10.26	-	-	-	T	149638546	C	T	149638546	3	4	675	1	0	0	0	0	1	0	0	0	9279	797	28	4	711	4	MAMLD1	23	149638546	Missense_Mutation	SNP	C	TCGA-D8-A146-01A-31D-A10Y-09	536554	149638546	5632014	28	57956										
IGSF21	0	genome.wustl.edu	37	chr1	18618477	18618477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	acctggtgtaccagtccactGtgaggtgagtgcctgggggt	16	9	0	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	18618477	18618477	G	T	SNP	IGSF21	ENST00000251296	human	ensembl	69_37n	1	known	missense	c.301	p.V101L	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF21	HGNC	ENSG00000117154	51	0	0	41	9	18	-	-	-	T	18618477	G	T	18618477	3	4	676	1	0	0	0	0	1	0	0	0	7653	1377	48	4	311	4	IGSF21	1	18618477	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		18618477	230632144	1	57957										
STX12	0	genome.wustl.edu	37	chr1	28128254	28128254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gcagccttaaacaatttccaGgctgtgcagagaagggtatc	11	9	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	28128254	28128254	G	T	SNP	STX12	ENST00000373943	human	ensembl	69_37n	1	known	missense	c.354	p.Q118H	1.000	superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX12	HGNC	ENSG00000117758	55	0	0	48	12	20	-	-	-	T	28128254	G	T	28128254	3	4	676	1	0	0	0	0	1	0	0	0	15429	991	35	4	368	4	STX12	1	28128254	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	9509777	28128254	221122367	2	57958										
CSMD2	0	genome.wustl.edu	37	chr1	34076840	34076840	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtggagaagttcaggaactgGatgtgagctcctgggagcaa	16	6	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	34076840	34076840	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.6144	p.I2048	0.997	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	138	0	0	105	30	22.22	-	-	-	A	34076840	G	A	34076840	2	1	676	1	0	0	0	0	0	0	0	1	3977	1164	41	2		2	CSMD2	1	34076840	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	5948586	34076840	215173781	3	57959										
PDE4B	0	genome.wustl.edu	37	chr1	66838157	66838157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccactggacgagcagaacagGgactgccagggtctgatgga	15	10	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	66838157	66838157	G	T	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.2007	p.R669S	0.728	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	73	0	0	53	8	13.11	-	-	-	T	66838157	G	T	66838157	3	4	676	1	0	0	0	0	1	0	0	0	11713	1223	43	4	2427	4	PDE4B	1	66838157	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	32761317	66838157	182412464	4	57960										
RABGGTB	0	genome.wustl.edu	37	chr1	76254953	76254953	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tagagaagagattctggcatTtattaagtcttgccaacatg	9	6	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	76254953	76254953	T	A	SNP	RABGGTB	ENST00000319942	human	ensembl	69_37n	1	known	missense	c.221	p.F74Y	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	RABGGTB	HGNC	ENSG00000137955	159	0	0	168	68	28.81	-	-	-	A	76254953	T	A	76254953	3	1	676	1	0	0	0	0	1	0	0	0	13051	1841	64	5	231	5	RABGGTB	1	76254953	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	9416796	76254953	172995668	5	57961										
IFI44L	0	genome.wustl.edu	37	chr1	79107183	79107183	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ttttgatggttggaaattatGcttcagatttggaactggac	11	4	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	79107183	79107183	G	C	SNP	IFI44L	ENST00000370751	human	ensembl	69_37n	1	known	missense	c.1213	p.A405P	0.653	NULL	NULL	-	no_errors	IFI44L	HGNC	ENSG00000137959	149	0	0	159	32	16.75	-	-	-	C	79107183	G	C	79107183	3	2	676	1	0	0	0	0	1	0	0	0	7572	1319	46	4	1239	4	IFI44L	1	79107183	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	2852230	79107183	170143438	6	57962										
INTS3	0	genome.wustl.edu	37	chr1	153736642	153736642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tccttgcttcctgcctacagGagctcttcaaggcccacttt	7	15	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	153736642	153736642	G	A	SNP	INTS3	ENST00000318967	human	ensembl	69_37n	1	known	missense	c.1870	p.E624K	1.000	NULL	pfam_Integrator_3	-	no_errors	INTS3	HGNC	ENSG00000143624	160	0	0	126	136	51.91	-	-	-	A	153736642	G	A	153736642	3	1	676	1	0	0	0	0	1	0	0	0	7833	1175	41	2	1940	2	INTS3	1	153736642	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	74629459	153736642	95513979	7	57963										
TDRD10	0	genome.wustl.edu	37	chr1	154516883	154516883	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	atgcaggctctgtttagcacCctggctcaggcggaggagca	14	11	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	154516883	154516883	C	A	SNP	TDRD10	ENST00000368480	human	ensembl	69_37n	1	known	silent	c.687	p.T229	0.025	pfam_Tudor	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239	28	0	0	34	33	49.25	-	-	-	A	154516883	C	A	154516883	2	1	676	1	0	0	0	0	0	0	0	1	15826	610	22	4		4	TDRD10	1	154516883	Silent	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	780241	154516883	94733738	8	57964										
OR10T2	0	genome.wustl.edu	37	chr1	158368709	158368709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aggctaacttgataacaggtGccatgtcacagaaatagtgg	11	7	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	158368709	158368709	G	T	SNP	OR10T2	ENST00000334438	human	ensembl	69_37n	-1	known	missense	c.548	p.A183E	0.128	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306	59	0	0	54	17	23.94	-	-	-	T	158368709	G	T	158368709	3	4	676	1	0	0	0	0	1	0	0	0	10992	1319	46	4	398	4	OR10T2	1	158368709	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	3851826	158368709	90881912	9	57965										
DDR2	0	genome.wustl.edu	37	chr1	162745606	162745606	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccgccacgagccccctaattCttcctccagcgatgtacgca	7	18	1	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	162745606	162745606	C	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.2021	p.S674Y	0.285	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	117	0	0	125	53	29.78	-	-	-	A	162745606	C	A	162745606	3	1	676	1	0	0	0	0	1	0	0	0	4368	913	32	2	2071	2	DDR2	1	162745606	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	4376897	162745606	86505015	10	57966										
NPHS2	0	genome.wustl.edu	37	chr1	179520518	179520518	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agctgaacggcagcaggggtGcctgacagaatctcagctgc	14	11	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	179520518	179520518	G	A	SNP	NPHS2	ENST00000367615	human	ensembl	69_37n	-1	known	silent	c.942	p.G314	0.352	prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218	86	0	0	45	29	39.19	-	-	-	A	179520518	G	A	179520518	2	1	676	1	0	0	0	0	0	0	0	1	10655	1306	46	4		4	NPHS2	1	179520518	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	16774912	179520518	69730103	11	57967										
LGR6	0	genome.wustl.edu	37	chr1	202287825	202287825	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctcagctttgcctccatgctGggcctcttccctgtcacgcc	8	18	3	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	1	202287825	202287825	G	T	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	silent	c.2394	p.L798	0.998	pfam_7TM_GPCR_Rhodpsn	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	84	0	0	38	54	58.7	-	-	-	T	202287825	G	T	202287825	2	4	676	1	0	0	0	0	0	0	0	1	8813	1335	47	4		4	LGR6	1	202287825	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	22767307	202287825	46962796	12	57968										
LOXL3	0	genome.wustl.edu	37	chr2	74777385	74777385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccccagcatcctcatcgtgcGtacagtcactgttcccccag	7	18	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	74777385	74777385	G	A	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.404	p.T135M	0.995	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	61	0	0	42	9	17.65	-	-	-	A	74777385	G	A	74777385	3	1	676	1	0	0	0	0	1	0	0	0	8967	1145	40	1	1905	1	LOXL3	2	74777385	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		74777385	168421988	13	57969										
MYO7B	0	genome.wustl.edu	37	chr2	128346067	128346067	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gagatattcaacttggagttAgcagagaccaagctgggcca	12	8	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	128346067	128346067	A	C	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.1791	p.L597F	0.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	84	0	0	85	30	26.09	-	-	-	C	128346067	A	C	128346067	3	2	676	1	0	0	0	0	1	0	0	0	10155	417	15	5	1845	5	MYO7B	2	128346067	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	53568682	128346067	114853306	14	57970										
TTN	0	genome.wustl.edu	37	chr2	179443774	179443774	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggaggagcccactttaaggtCatggcttctgctgtgacttc	12	10	2	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	179443774	179443774	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60279	p.M20093I	0.510	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	179	1	0.56	213	30	12.35	-	-	-	G	179443774	C	G	179443774	3	3	676	1	0	0	0	0	1	0	0	0	16832	826	29	2	40168	2	TTN	2	179443774	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	51097707	179443774	63755599	15	57971										
DNAH7	0	genome.wustl.edu	37	chr2	196912145	196912145	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gagatttgccctttgatttgGaagtagatggtccaacataa	10	6	0	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	196912145	196912145	G	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.329	p.S110C	0.180	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	244	0	0	125	187	59.94	-	-	-	C	196912145	G	C	196912145	3	2	676	1	0	0	0	0	1	0	0	0	4641	1174	41	2	11989	2	DNAH7	2	196912145	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	17468371	196912145	46287228	16	57972										
CCDC150	0	genome.wustl.edu	37	chr2	197541323	197541323	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cagtgtatccagaaagcacaGgatgctgaaaagagaacagc	11	8	0	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	197541323	197541323	G	C	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	missense	c.1308	p.Q436H	0.989	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	115	0	0	108	14	11.48	-	-	-	C	197541323	G	C	197541323	3	2	676	1	0	0	0	0	1	0	0	0	2810	991	35	4	1354	4	CCDC150	2	197541323	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	629178	197541323	45658050	17	57973										
ASB1	0	genome.wustl.edu	37	chr2	239353225	239353225	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	catggatgctgttctgcgccAcggctgtgaggcagccttcg	14	12	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	2	239353225	239353225	A	C	SNP	ASB1	ENST00000264607	human	ensembl	69_37n	1	known	missense	c.737	p.H246P	0.971	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802	71	0	0	95	26	21.31	-	-	-	C	239353225	A	C	239353225	3	2	676	1	0	0	0	0	1	0	0	0	1017	159	6	5	751	5	ASB1	2	239353225	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	41811902	239353225	3846148	18	57974										
SCN11A	0	genome.wustl.edu	37	chr3	38951660	38951660	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tataattatagtcaggattaAttttggtgtgcttacattca	7	4	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	3	38951660	38951660	A	G	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.998	p.I333T	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	120	0	0	42	40	48.78	-	-	-	G	38951660	A	G	38951660	3	3	676	1	0	0	0	0	1	0	0	0	14001	101	4	5	4453	5	SCN11A	3	38951660	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09		38951660	159070770	19	57975										
RBM6	0	genome.wustl.edu	37	chr3	50005040	50005040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctttgatttccaggggcattCggggcctccttttgcaaatg	11	10	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	3	50005040	50005040	C	T	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.182	p.S61L	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	143	0	0	92	19	17.12	-	-	-	T	50005040	C	T	50005040	3	4	676	1	0	0	0	0	1	0	0	0	13227	893	31	1	188	1	RBM6	3	50005040	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	11053380	50005040	148017390	20	57976										
GOLGB1	0	genome.wustl.edu	37	chr3	121417739	121417739	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cttgtccactttcctcagcaGaagagctcctcttgttggca	8	13	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	3	121417739	121417739	G	T	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.1616	p.S539Y	0.019	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	57	0	0	19	11	36.67	-	-	-	T	121417739	G	T	121417739	3	4	676	1	0	0	0	0	1	0	0	0	6614	942	33	2	8203	2	GOLGB1	3	121417739	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	71412699	121417739	76604691	21	57977										
MUC4	0	genome.wustl.edu	37	chr3	195510877	195510877	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tgacaggaagaggggtggtgTcacctgtggatgctgaggga	19	5	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	3	195510877	195510877	T	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.7574	p.D2525V	0.139	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	380	0	0	627	91	12.66	-	-	-	A	195510877	T	A	195510877	3	1	676	1	0	0	0	0	1	0	0	0	10050	1667	58	5		5	MUC4	3	195510877	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	74093138	195510877	2511553	22	57978										
IQCG	0	genome.wustl.edu	37	chr3	197619514	197619514	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cttaccatctttgccaggtcTtgaaggtgtgctaagtcact	9	10	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	3	197619514	197619514	T	C	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	silent	c.1080	p.Q360	0.998	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	567	1	0.18	1011	121	10.69	-	-	-	C	197619514	T	C	197619514	2	2	676	1	0	0	0	0	0	0	0	1	7864	1606	56	5		5	IQCG	3	197619514	Silent	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	2108637	197619514	402916	23	57979										
MARCH6	0	genome.wustl.edu	37	chr5	10410284	10410284	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agtgaactgtccctcgagctGcttctgcttcaggttgtctt	10	11	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	10410284	10410284	G	A	SNP	MARCH6	ENST00000274140	human	ensembl	69_37n	1	known	silent	c.1587	p.L529	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495	166	0	0	91	28	23.53	-	-	-	A	10410284	G	A	10410284	2	1	676	1	0	0	0	0	0	0	0	1	9376	1306	46	4		4	MARCH6	5	10410284	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		10410284	170504976	24	57980										
DMGDH	0	genome.wustl.edu	37	chr5	78328517	78328517	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtccttctcccacctgtactGagtgtcctggcctggtttgt	10	13	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	78328517	78328517	G	A	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	nonsense	c.1510	p.Q504*	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	35	0	0	22	4	15.38	-	-	-	A	78328517	G	A	78328517	4	1	676	1	0	0	0	0	0	1	0	0	4617	1299	45	2	1122	2	DMGDH	5	78328517	Nonsense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	67918233	78328517	102586743	25	57981										
PPIP5K2	0	genome.wustl.edu	37	chr5	102526670	102526670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tcatctgacgttccacggaaGaccgctgaaatttgtaggaa	10	9	2	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	102526670	102526670	G	C	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	missense	c.3480	p.K1160N	1.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	200	0	0	75	36	32.43	-	-	-	C	102526670	G	C	102526670	3	2	676	1	0	0	0	0	1	0	0	0	12410	933	33	2	3523	2	PPIP5K2	5	102526670	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	24198153	102526670	78388590	26	57982										
PDLIM7	0	genome.wustl.edu	37	chr5	176910945	176910945	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cccagcgtcgatcttgaagtCacagccatggcatttcgtgc	10	13	2	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	176910945	176910945	C	G	SNP	PDLIM7	ENST00000355841	human	ensembl	69_37n	-1	known	missense	c.1210	p.D404H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923	54	0	0	56	14	19.72	-	-	-	G	176910945	C	G	176910945	3	3	676	1	0	0	0	0	1	0	0	0	11757	826	29	2	171	2	PDLIM7	5	176910945	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	74384275	176910945	4004315	27	57983										
GFPT2	0	genome.wustl.edu	37	chr5	179744011	179744011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tctcatagtattgaaaactgAttctggctgttcgaagatct	8	7	3	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	179744011	179744011	A	C	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.1006	p.S336A	1.000	tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	189	0	0	166	26	13.54	-	-	-	C	179744011	A	C	179744011	3	2	676	1	0	0	0	0	1	0	0	0	6398	333	12	5	1078	5	GFPT2	5	179744011	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	2833066	179744011	1171249	28	57984										
FLT4	0	genome.wustl.edu	37	chr5	180045774	180045774	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gaggccaggctctcaccttcTtggtctggagaagcccgcct	12	14	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	5	180045774	180045774	T	C	SNP	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	silent	c.2997	p.Q999	0.022	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	35	0	0	13	9	39.13	-	-	-	C	180045774	T	C	180045774	2	2	676	1	0	0	0	0	0	0	0	1	5990	1606	56	5		5	FLT4	5	180045774	Silent	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	301763	180045774	869486	29	57985										
HLA-F	0	genome.wustl.edu	37	chr6	29692892	29692892	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggccctgggcttctaccctgCggagatcacgctgacctggc	13	15	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	29692892	29692892	C	G	SNP	HLA-F	ENST00000259951	human	ensembl	69_37n	1	known	missense	c.695	p.A232G	0.962	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-F	HGNC	ENSG00000204642	85	0	0	122	20	14.08	-	-	-	G	29692892	C	G	29692892	3	3	676	1	0	0	0	0	1	0	0	0	7262	768	27	3	709	3	HLA-F	6	29692892	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		29692892	141422175	30	57986										
IP6K3	0	genome.wustl.edu	37	chr6	33703104	33703104	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gccagcggcagggattcataGaacctctgctcccgggagac	13	13	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	33703104	33703104	G	C	SNP	IP6K3	ENST00000293756	human	ensembl	69_37n	-1	known	missense	c.150	p.F50L	1.000	NULL	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896	26	0	0	28	15	34.88	-	-	-	C	33703104	G	C	33703104	3	2	676	1	0	0	0	0	1	0	0	0	7844	933	33	2	1102	2	IP6K3	6	33703104	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	4010212	33703104	137411963	31	57987										
SRPK1	0	genome.wustl.edu	37	chr6	35836837	35836837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cttcaccttgagcttttctgCattttttggctcaaggggat	9	9	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	35836837	35836837	C	T	SNP	SRPK1	ENST00000373825	human	ensembl	69_37n	-1	known	missense	c.1462	p.A488T	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	209	0	0	143	129	47.43	-	-	-	T	35836837	C	T	35836837	3	4	676	1	0	0	0	0	1	0	0	0	15250	710	25	4	525	4	SRPK1	6	35836837	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	2133733	35836837	135278230	32	57988										
MTCH1	0	genome.wustl.edu	37	chr6	36937843	36937843	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tcaggtacttccagcagtgaAtccaggatttgaacactggg	11	9	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	36937843	36937843	A	G	SNP	MTCH1	ENST00000373627	human	ensembl	69_37n	-1	known	missense	c.1070	p.I357T	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409	57	0	0	48	21	30.43	-	-	-	G	36937843	A	G	36937843	3	3	676	1	0	0	0	0	1	0	0	0	9985	101	4	5	107	5	MTCH1	6	36937843	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	1101006	36937843	134177224	33	57989										
FAM135A	0	genome.wustl.edu	37	chr6	71235917	71235917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggcttgtggaaaattattttGgttctcaaagcagtacggat	11	5	1	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	71235917	71235917	G	T	SNP	FAM135A	ENST00000418814	human	ensembl	69_37n	1	known	missense	c.3130	p.G1044C	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	65	0	0	45	14	23.73	-	-	-	T	71235917	G	T	71235917	3	4	676	1	0	0	0	0	1	0	0	0	5488	1348	47	4	3258	4	FAM135A	6	71235917	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	34298074	71235917	99879150	34	57990										
SNAP91	0	genome.wustl.edu	37	chr6	84303249	84303249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtggcggtggcagcggaggtGgtggtagtggtggtggcagc	24	5	0	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	84303249	84303249	G	A	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	silent	c.1644	p.T548	1.000	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	97	0	0	75	70	48.28	-	-	-	A	84303249	G	A	84303249	2	1	676	1	0	0	0	0	0	0	0	1	14922	1335	47	4		4	SNAP91	6	84303249	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	13067332	84303249	86811818	35	57991										
FBXL4	0	genome.wustl.edu	37	chr6	99374449	99374449	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aggtttctagaacatgtacaGctgtaggatacacctgttgt	10	7	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	99374449	99374449	G	C	SNP	FBXL4	ENST00000229971	human	ensembl	69_37n	-1	known	missense	c.416	p.A139G	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL4	HGNC	ENSG00000112234	64	0	0	57	31	35.23	-	-	-	C	99374449	G	C	99374449	3	2	676	1	0	0	0	0	1	0	0	0	5767	971	34	4	1477	4	FBXL4	6	99374449	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	15071200	99374449	71740618	36	57992										
AIM1	0	genome.wustl.edu	37	chr6	106967547	106967547	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aggaggactcagaggctgcaGacagcaaaagccttgtactt	12	9	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	106967547	106967547	G	A	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.1240	p.D414N	0.005	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	73	0	0	89	25	21.93	-	-	-	A	106967547	G	A	106967547	3	1	676	1	0	0	0	0	1	0	0	0	430	942	33	2	1246	2	AIM1	6	106967547	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	7593098	106967547	64147520	37	57993										
TPD52L1	0	genome.wustl.edu	37	chr6	125569511	125569511	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cgttggaacggccatcagcaAgaagttcggagacatgaggt	14	8	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	6	125569511	125569511	A	G	SNP	TPD52L1	ENST00000534000	human	ensembl	69_37n	1	known	missense	c.368	p.K123R	1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907	99	1	1	85	14	14.14	-	-	-	G	125569511	A	G	125569511	3	3	676	1	0	0	0	0	1	0	0	0	16494	72	3	5	382	5	TPD52L1	6	125569511	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	18601964	125569511	45545556	38	57994										
SNX8	0	genome.wustl.edu	37	chr7	2304030	2304030	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aagcttgtgaaagctattgtAgatgttccggatcagctccc	10	9	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	7	2304030	2304030	A	G	SNP	SNX8	ENST00000222990	human	ensembl	69_37n	-1	known	missense	c.685	p.Y229H	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266	57	0	0	30	37	54.41	-	-	-	G	2304030	A	G	2304030	3	3	676	1	0	0	0	0	1	0	0	0	14997	420	15	5	736	5	SNX8	7	2304030	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09		2304030	156834633	39	57995										
CACNA2D1	0	genome.wustl.edu	37	chr7	81589141	81589141	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cataagcttttctccatgaaAgattctgcaaaataaatatg	5	7	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	7	81589141	81589141	A	T	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.3007	p.F1003I	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	98	0	0	72	8	10	-	-	-	T	81589141	A	T	81589141	3	4	676	1	0	0	0	0	1	0	0	0	2573	72	3	5	316	5	CACNA2D1	7	81589141	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	79285111	81589141	77549522	40	57996										
TAC1	0	genome.wustl.edu	37	chr7	97361936	97361936	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aaatccaacatgaaaatcctCgtggccttggcagtcttttt	7	10	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	7	97361936	97361936	C	G	SNP	TAC1	ENST00000319273	human	ensembl	69_37n	1	known	silent	c.12	p.L4	1.000	prints_Protachykinin	smart_Tachykinin,prints_Protachykinin	-	no_errors	TAC1	HGNC	ENSG00000006128	209	1	0.48	123	75	37.88	-	-	-	G	97361936	C	G	97361936	2	3	676	1	0	0	0	0	0	0	0	1	15590	871	31	3		3	TAC1	7	97361936	Silent	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	15772795	97361936	61776727	41	57997										
LMTK2	0	genome.wustl.edu	37	chr7	97823289	97823289	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tctgtctgctttgcacaactCcagtgacctggaattaagag	9	10	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	7	97823289	97823289	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.3512	p.S1171C	0.434	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	25	0	0	27	15	35.71	-	-	-	G	97823289	C	G	97823289	3	3	676	1	0	0	0	0	1	0	0	0	8915	855	30	2	3554	2	LMTK2	7	97823289	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	461353	97823289	61315374	42	57998										
CNTNAP2	0	genome.wustl.edu	37	chr7	147675016	147675016	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agtgagccaagtggtggttgGagatactgaccgtcaaggct	15	7	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	7	147675016	147675016	G	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.2318	p.G773A	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	184	0	0	155	44	22	-	-	-	C	147675016	G	C	147675016	3	2	676	1	0	0	0	0	1	0	0	0	3677	1174	41	2	2376	2	CNTNAP2	7	147675016	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	49851727	147675016	11463647	43	57999										
DEFB1	0	genome.wustl.edu	37	chr8	6735372	6735372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	taaacagcagaaggtaggaaGttctcatggcgactggcagg	14	7	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	6735372	6735372	G	T	SNP	DEFB1	ENST00000297439	human	ensembl	69_37n	-1	known	missense	c.8	p.T3N	0.000	NULL	pfam_Defensin_beta-typ	-	no_errors	DEFB1	HGNC	ENSG00000164825	105	0	0	119	18	13.14	-	-	-	T	6735372	G	T	6735372	3	4	676	1	0	0	0	0	1	0	0	0	4425	1029	36	4	206	4	DEFB1	8	6735372	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		6735372	139628650	44	58000										
SGK223	0	genome.wustl.edu	37	chr8	8175701	8175701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gaagctgcaggagcttcagcGactgtaagagggccccgggc	16	11	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	8175701	8175701	G	A	SNP	SGK223	ENST00000330777	human	ensembl	69_37n	-1	known	missense	c.4184	p.S1395L	0.995	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRAGMIN	Clone_based_vega_gene	ENSG00000182319	24	0	0	9	24	72.73	-	-	-	A	8175701	G	A	8175701	3	1	676	1	0	0	0	0	1	0	0	0	14298	1059	37	1	28	1	SGK223	8	8175701	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	1440329	8175701	138188321	45	58001										
PPP2CB	0	genome.wustl.edu	37	chr8	30657145	30657145	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	catgaataagtagtttgtatCcggtgattttccaccaattc	7	8	0	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	30657145	30657145	C	A	SNP	PPP2CB	ENST00000221138	human	ensembl	69_37n	-1	known	missense	c.229	p.D77Y	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CB	HGNC	ENSG00000104695	203	0	0	102	49	32.45	-	-	-	A	30657145	C	A	30657145	3	1	676	1	0	0	0	0	1	0	0	0	12458	855	30	2	724	2	PPP2CB	8	30657145	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	22481444	30657145	115706877	46	58002										
PKHD1L1	0	genome.wustl.edu	37	chr8	110499050	110499050	+	Frame_Shift_Del	DEL	G	G	-													0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aaaatatgatgacatttaaaGgttggtatcaattcagttta							TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	110499050	110499050	G	-	DEL	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	frame_shift_del	c.9880	p.G3294fs	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	192	0	0	157	71	30.74	-	-	-	-	110499050	G	-	110499050	7	5	676	1	0	1	0	1	0	0	0	0	12046	1014	35	0	10114	0	PKHD1L1	8	110499050	Frame_Shift_Del	DEL	G	TCGA-D8-A147-01A-11D-A10Y-09	79841905	110499050	35864972	47	58003										
CSMD3	0	genome.wustl.edu	37	chr8	113960102	113960103	+	In_Frame_Ins	INS	-	-	TTT													0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctgttttaatacctccctcaINStttactgcaacagcagggaa							TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	113960102	113960103	-	TTT	INS	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	in_frame_ins	c.1425_1424	p.475in_frame_insK	1.000:1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	258	0	0	143	19	11.73	-	-	-	TTT	113960103	-	TTT	113960102	7	5	676	1	0	1	1	0	0	0	0	0	3978	214	8	0	9950	0	CSMD3	8	113960102	In_Frame_Ins	INS	-	TCGA-D8-A147-01A-11D-A10Y-09	3461052	113960102	32403920	48	58004										
MYC	0	genome.wustl.edu	37	chr8	128753130	128753130	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aggagcaaaagctcatttctGaagaggacttgttgcggaaa	12	6	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	128753130	128753130	G	A	SNP	MYC	ENST00000377970	human	ensembl	69_37n	1	known	missense	c.1291	p.E431K	0.964	pfam_Myc-LZ,superfamily_HLH_DNA-bd	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997	29	0	0	34	8	19.05	-	-	-	A	128753130	G	A	128753130	3	1	676	1	0	0	0	0	1	0	0	0	10088	1291	45	2	1301	2	MYC	8	128753130	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	14793028	128753130	17610892	49	58005										
NDRG1	0	genome.wustl.edu	37	chr8	134260979	134260979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gcagggtgactgtgtgggttCccggcattggtcgctcaatc	15	10	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	134260979	134260979	C	G	SNP	NDRG1	ENST00000323851	human	ensembl	69_37n	-1	known	missense	c.734	p.G245A	0.994	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	64	0	0	95	13	12.04	-	-	-	G	134260979	C	G	134260979	3	3	676	1	0	0	0	0	1	0	0	0	10323	855	30	2	474	2	NDRG1	8	134260979	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	5507849	134260979	12103043	50	58006										
FAM135B	0	genome.wustl.edu	37	chr8	139268993	139268993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aaaatctacttcactcagtgCgtcttccatctgcaaaagaa	5	11	5	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	8	139268993	139268993	C	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.307	p.A103S	0.996	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	133	0	0	129	68	34.52	-	-	-	A	139268993	C	A	139268993	3	1	676	1	0	0	0	0	1	0	0	0	5489	768	27	3	3977	3	FAM135B	8	139268993	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	5008014	139268993	7095029	51	58007										
EHMT1	0	genome.wustl.edu	37	chr9	140729276	140729276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aaaggcaagctcttcagctgCcgctgcggctcccccaagtg	11	15	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	9	140729276	140729276	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.3768	p.C1256	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	25	0	0	26	6	18.75	-	-	-	T	140729276	C	T	140729276	2	4	676	1	0	0	0	0	0	0	0	1	5018	747	26	4		4	EHMT1	9	140729276	Silent	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		140729276	484155	52	58008										
ST8SIA6	0	genome.wustl.edu	37	chr10	17363189	17363189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ttgggatggaaaaatagaacCttttgtcttgctttagactc	9	6	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	10	17363189	17363189	C	A	SNP	ST8SIA6	ENST00000377602	human	ensembl	69_37n	-1	known	missense	c.885	p.K295N	0.893	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488	141	0	0	85	34	28.57	-	-	-	A	17363189	C	A	17363189	3	1	676	1	0	0	0	0	1	0	0	0	15327	680	24	4	315	4	ST8SIA6	10	17363189	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		17363189	118171558	53	58009										
MRC1	0	genome.wustl.edu	37	chr10	18112248	18112248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctgggttgctatcactctctAtgcctgtgactcaaaaagtg	9	10	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	10	18112248	18112248	A	G	SNP	MRC1	ENST00000239761	human	ensembl	69_37n	1	known	missense	c.266	p.Y89C	0.700	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586	147	0	0	104	70	40.23	-	-	-	G	18112248	A	G	18112248	3	3	676	1	0	0	0	0	1	0	0	0	9828	449	16	5	4763	5	MRC1	10	18112248	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	749059	18112248	117422499	54	58010										
ANKRD26	0	genome.wustl.edu	37	chr10	27324552	27324552	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tacaattttaaggtcctcaaAacatttcttttctttttcct	2	9	3	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	10	27324552	27324552	A	C	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	missense	c.2875	p.F959V	0.012	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	235	0	0	128	49	27.68	-	-	-	C	27324552	A	C	27324552	3	2	676	1	0	0	0	0	1	0	0	0	654	14	1	5	2349	5	ANKRD26	10	27324552	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	9212304	27324552	108210195	55	58011										
TET1	0	genome.wustl.edu	37	chr10	70405672	70405672	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aaaaaattggactcagatgaTctatcatgtcaggatgcaac	8	7	4	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	10	70405672	70405672	T	C	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	silent	c.3186	p.D1062	0.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	84	0	0	70	44	38.6	-	-	-	C	70405672	T	C	70405672	2	2	676	1	0	0	0	0	0	0	0	1	15864	1432	50	5		5	TET1	10	70405672	Silent	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	43081120	70405672	65129075	56	58012										
EXOC6	0	genome.wustl.edu	37	chr10	94653185	94653185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtatccgtaatcatgacaagGaaattgaaaagatgtgtaat	9	4	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	10	94653185	94653185	G	A	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.229	p.E77K	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	158	0	0	119	21	15	-	-	-	A	94653185	G	A	94653185	3	1	676	1	0	0	0	0	1	0	0	0	5344	1175	41	2	277	2	EXOC6	10	94653185	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	24247513	94653185	40881562	57	58013										
TRIM34	0	genome.wustl.edu	37	chr11	5624731	5624731	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cctgtgtgccagaccagctaCcagccagggaacctgcggcc	12	16	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	5624731	5624731	C	G	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	1	known	nonsense	c.273	p.Y91*	0.975	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	125	0	0	116	33	22	-	-	-	G	5624731	C	G	5624731	4	3	676	1	0	0	0	0	0	1	0	0	16604	518	18	4		4	TRIM34	11	5624731	Nonsense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		5624731	129381785	58	58014										
LGR4	0	genome.wustl.edu	37	chr11	27406878	27406878	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tgagagccagggtcagcgccTgtagggtgggcagattgctg	18	8	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	27406878	27406878	T	C	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	missense	c.539	p.Q180R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	139	0	0	109	22	16.79	-	-	-	C	27406878	T	C	27406878	3	2	676	1	0	0	0	0	1	0	0	0	8811	1580	55	5	2372	5	LGR4	11	27406878	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	21782147	27406878	107599638	59	58015										
OR4X2	0	genome.wustl.edu	37	chr11	48266932	48266932	+	Frame_Shift_Del	DEL	C	C	-													0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggtggggctgcatggcacagCttttcttcttgcacttcttt							TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	48266932	48266932	C	-	DEL	OR4X2	ENST00000302329	human	ensembl	69_37n	1	known	frame_shift_del	c.277	p.L93fs	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X2	HGNC	ENSG00000172208	148	0	0	150	38	19.9	-	-	-	-	48266932	C	-	48266932	7	5	676	1	0	1	0	1	0	0	0	0	11158	797	28	0	279	0	OR4X2	11	48266932	Frame_Shift_Del	DEL	C	TCGA-D8-A147-01A-11D-A10Y-09	20860054	48266932	86739584	60	58016										
OR5I1	0	genome.wustl.edu	37	chr11	55703108	55703108	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccgtgagtaaataaagaggaGagtcccttggtagatcgtca	12	7	1	4			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	55703108	55703108	G	A	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.769	p.L257F	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	149	0	0	91	51	35.92	-	-	-	A	55703108	G	A	55703108	3	1	676	1	0	0	0	0	1	0	0	0	11237	942	33	2	178	2	OR5I1	11	55703108	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	7436176	55703108	79303408	61	58017										
PACS1	0	genome.wustl.edu	37	chr11	65983634	65983634	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gcactggtgcttggcctacaCagcaacgtgaaggatgtctc	12	11	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	65983634	65983634	C	T	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	silent	c.705	p.H235	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	97	0	0	45	22	32.84	-	-	-	T	65983634	C	T	65983634	2	4	676	1	0	0	0	0	0	0	0	1	11445	477	17	4		4	PACS1	11	65983634	Silent	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	10280526	65983634	69022882	62	58018										
DYNC2H1	0	genome.wustl.edu	37	chr11	103178535	103178535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctttactcctattttactacAgtcaagtctgaagataacat	4	9	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	103178535	103178535	A	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.11489	p.Q3830L	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	119	0	0	31	101	76.52	-	-	-	T	103178535	A	T	103178535	3	4	676	1	0	0	0	0	1	0	0	0	4881	188	7	5	11803	5	DYNC2H1	11	103178535	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	37194901	103178535	31827981	63	58019										
ESAM	0	genome.wustl.edu	37	chr11	124623780	124623780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gggctcgtgcggaggtgacaGaggaaagggtcccattcttg	17	8	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	11	124623780	124623780	G	A	SNP	ESAM	ENST00000278927	human	ensembl	69_37n	-1	known	missense	c.935	p.S312F	0.997	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ESAM	HGNC	ENSG00000149564	125	0	0	84	19	18.45	-	-	-	A	124623780	G	A	124623780	3	1	676	1	0	0	0	0	1	0	0	0	5284	942	33	2	241	2	ESAM	11	124623780	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	21445245	124623780	10382736	64	58020										
CD163L1	0	genome.wustl.edu	37	chr12	7527924	7527924	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	catggatacagggaggtgctCcaagaactgtcatttgacag	12	8	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	7527924	7527924	C	G	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.2954	p.G985A	0.591	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	53	0	0	70	18	20.45	-	-	-	G	7527924	C	G	7527924	3	3	676	1	0	0	0	0	1	0	0	0	2997	855	30	2	1443	2	CD163L1	12	7527924	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		7527924	126323971	65	58021										
MCRS1	0	genome.wustl.edu	37	chr12	49957250	49957250	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tttgctcagcagctgctcctCagccttgctaaacagggcct	9	14	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	49957250	49957250	C	T	SNP	MCRS1	ENST00000357123	human	ensembl	69_37n	-1	known	missense	c.676	p.E226K	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778	118	0	0	115	37	24.34	-	-	-	T	49957250	C	T	49957250	3	4	676	1	0	0	0	0	1	0	0	0	9470	835	29	2	787	2	MCRS1	12	49957250	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	42429326	49957250	83894645	66	58022										
CAPS2	0	genome.wustl.edu	37	chr12	75716789	75716789	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	atactgagtatatggagtttGacatggtgtgacccagccaa	11	7	0	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	75716789	75716789	G	C	SNP	CAPS2	ENST00000409445	human	ensembl	69_37n	-1	known	missense	c.313	p.Q105E	0.039	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CAPS2	HGNC	ENSG00000180881	43	0	0	12	9	42.86	-	-	-	C	75716789	G	C	75716789	3	2	676	1	0	0	0	0	1	0	0	0	2663	1299	45	2	1416	2	CAPS2	12	75716789	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	25759539	75716789	58135106	67	58023										
LRRIQ1	0	genome.wustl.edu	37	chr12	85546835	85546835	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	taaaatgggatgatacttcaTttaatttaccaagtaatcca	5	6	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	85546835	85546835	T	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.4453	p.F1485I	0.523	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	108	0	0	59	10	14.49	-	-	-	A	85546835	T	A	85546835	3	1	676	1	0	0	0	0	1	0	0	0	9095	1493	52	5	4535	5	LRRIQ1	12	85546835	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	9830046	85546835	48305060	68	58024										
FGD6	0	genome.wustl.edu	37	chr12	95546743	95546743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tccttggcaatatgatgaacTttacttttcattccattatc	4	9	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	95546743	95546743	T	G	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.2613	p.K871N	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	278	0	0	201	60	22.99	-	-	-	G	95546743	T	G	95546743	3	3	676	1	0	0	0	0	1	0	0	0	5883	1606	56	5	1751	5	FGD6	12	95546743	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	9999908	95546743	38305152	69	58025										
SCYL2	0	genome.wustl.edu	37	chr12	100729669	100729669	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aataaagaggacgggttacaGaataaacataaaagagtgag	11	3	0	4			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	100729669	100729669	G	C	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.2010	p.Q670H	0.064	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	74	0	0	33	24	42.11	-	-	-	C	100729669	G	C	100729669	3	2	676	1	0	0	0	0	1	0	0	0	14036	933	33	2	2068	2	SCYL2	12	100729669	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	5182926	100729669	33122226	70	58026										
PEBP1	0	genome.wustl.edu	37	chr12	118582484	118582484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccgatctggagaccaccgtgGcaaattcaaggtggcgtcct	12	12	2	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	12	118582484	118582484	G	T	SNP	PEBP1	ENST00000261313	human	ensembl	69_37n	1	known	missense	c.440	p.G147V	1.000	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	PEBP1	HGNC	ENSG00000089220	92	0	0	76	19	20	-	-	-	T	118582484	G	T	118582484	3	4	676	1	0	0	0	0	1	0	0	0	11786	1203	42	4	454	4	PEBP1	12	118582484	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	17852815	118582484	15269411	71	58027										
BTBD7	0	genome.wustl.edu	37	chr14	93709023	93709023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agcttcttcctgttttttagGagacgtctgaccaggtaggt	11	8	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	14	93709023	93709023	G	A	SNP	BTBD7	ENST00000334746	human	ensembl	69_37n	-1	known	missense	c.2995	p.P999S	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114	214	0	0	57	95	62.5	-	-	-	A	93709023	G	A	93709023	3	1	676	1	0	0	0	0	1	0	0	0	1555	1174	41	2	407	2	BTBD7	14	93709023	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		93709023	13640517	72	58028										
MTMR10	0	genome.wustl.edu	37	chr15	31239429	31239429	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aacactgccaggtaggtttcGgagaactcaaaagctgcagg	12	9	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	15	31239429	31239429	G	C	SNP	MTMR10	ENST00000435680	human	ensembl	69_37n	-1	known	silent	c.1452	p.S484	0.000	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR10	HGNC	ENSG00000166912	154	0	0	109	72	39.78	-	-	-	C	31239429	G	C	31239429	2	2	676	1	0	0	0	0	0	0	0	1	10011	1103	39	3		3	MTMR10	15	31239429	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		31239429	71291963	73	58029										
SPTBN5	0	genome.wustl.edu	37	chr15	42144921	42144921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtgcagcagcaactccacatCtgacactgagtgctggggag	13	11	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	15	42144921	42144921	C	G	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	missense	c.10360	p.D3454H	0.567	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	69	0	0	32	22	40.74	-	-	-	G	42144921	C	G	42144921	3	3	676	1	0	0	0	0	1	0	0	0	15213	913	32	2	696	2	SPTBN5	15	42144921	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	10905492	42144921	60386471	74	58030										
COPS2	0	genome.wustl.edu	37	chr15	49420938	49420938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccagcaagctctccacatcaGctacatctatgtttaactcc	4	15	3	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	15	49420938	49420938	G	A	SNP	COPS2	ENST00000299259	human	ensembl	69_37n	-1	known	missense	c.1169	p.A390V	1.000	pfam_PCI_dom,pfam_COP9_signalosome_subunit_CSN8,smart_PCI_dom	pfam_PCI_dom,pfam_COP9_signalosome_subunit_CSN8,smart_PAM,smart_PCI_dom	-	no_errors	COPS2	HGNC	ENSG00000166200	112	0	0	50	20	28.57	-	-	-	A	49420938	G	A	49420938	3	1	676	1	0	0	0	0	1	0	0	0	3763	971	34	4	191	4	COPS2	15	49420938	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	7276017	49420938	53110454	75	58031										
TSC2	0	genome.wustl.edu	37	chr16	2112513	2112513	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gacaggagtcctccctcctgAacctgatctcctatagagcg	9	14	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	16	2112513	2112513	A	T	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	1	known	missense	c.1273	p.N425Y	1.000	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	85	0	0	61	18	22.78	-	-	-	T	2112513	A	T	2112513	3	4	676	1	0	0	0	0	1	0	0	0	16702	246	9	5	1319	5	TSC2	16	2112513	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09		2112513	88242240	76	58032										
DOC2A	0	genome.wustl.edu	37	chr16	30018135	30018135	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	taggggtccgagtaaccgttGacgtccatggcagccagatg	14	10	0	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	16	30018135	30018135	G	T	SNP	DOC2A	ENST00000564357	human	ensembl	69_37n	-1	novel	missense	c.358	p.Q120K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOC2A	HGNC	ENSG00000149927	72	0	0	94	19	16.81	-	-	-	T	30018135	G	T	30018135	3	4	676	1	0	0	0	0	1	0	0	0	4718	1277	45	2	369	2	DOC2A	16	30018135	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	27905622	30018135	60336618	77	58033										
CKLF	0	genome.wustl.edu	37	chr16	66592170	66592170	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	attgttatcactggatttgaAgtcaccgttatcttattttt	6	6	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	16	66592170	66592170	A	T	SNP	CKLF	ENST00000264001	human	ensembl	69_37n	1	known	missense	c.156	p.E52D	0.997	NULL	NULL	-	no_errors	CKLF	HGNC	ENSG00000217555	312	0	0	124	125	50.2	-	-	-	T	66592170	A	T	66592170	3	4	676	1	0	0	0	0	1	0	0	0	3477	69	3	5	162	5	CKLF	16	66592170	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	36574035	66592170	23762583	78	58034										
TP53	0	genome.wustl.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	72	0	0	31	41	56.94	-	-	-	A	7578403	C	A	7578403	3	1	676	1	0	0	0	0	1	0	0	0	16477	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		7578403	73616807	79	58035										
MYO15A	0	genome.wustl.edu	37	chr17	18082136	18082136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtggagaacctgctcagtgcCcatgagaagcggctcacatt	12	11	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	18082136	18082136	C	A	SNP	MYO15A	ENST00000418233	human	ensembl	69_37n	1	novel	missense	c.2389	p.P797T	1.000	pfscan_FERM_domain	pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,superfamily_FERM_central,superfamily_SH3_domain,smart_SH3_domain,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	212	0	0	69	94	57.32	-	-	-	A	18082136	C	A	18082136	3	1	676	1	0	0	0	0	1	0	0	0	10135	610	22	4	10799	4	MYO15A	17	18082136	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	10503733	18082136	63113074	80	58036										
HEXIM1	0	genome.wustl.edu	37	chr17	43227034	43227034	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cataggagacgcccgtccaaGaagaagcggcattggaaacc	12	11	0	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	43227034	43227034	G	A	SNP	HEXIM1	ENST00000332499	human	ensembl	69_37n	1	known	silent	c.477	p.K159	1.000	NULL	NULL	-	no_errors	HEXIM1	HGNC	ENSG00000186834	33	0	0	34	11	24.44	-	-	-	A	43227034	G	A	43227034	2	1	676	1	0	0	0	0	0	0	0	1	7127	933	33	2		2	HEXIM1	17	43227034	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	25144898	43227034	37968176	81	58037										
SPOP	0	genome.wustl.edu	37	chr17	47688699	47688699	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggcaacacacaagcagcagtCtgtgaaccgggaattctccc	10	13	2	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	47688699	47688699	C	G	SNP	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	missense	c.601	p.D201H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOP	HGNC	ENSG00000121067	95	0	0	78	17	17.89	-	-	-	G	47688699	C	G	47688699	3	3	676	1	0	0	0	0	1	0	0	0	15175	913	32	2	543	2	SPOP	17	47688699	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	4461665	47688699	33506511	82	58038										
SPAG9	0	genome.wustl.edu	37	chr17	49091680	49091680	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gagagattctgtattgcgatCaaaagctttgttctctatgc	9	7	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	49091680	49091680	C	G	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.1126	p.D376H	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	169	0	0	139	27	16.27	-	-	-	G	49091680	C	G	49091680	3	3	676	1	0	0	0	0	1	0	0	0	15076	826	29	2	2927	2	SPAG9	17	49091680	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	1402981	49091680	32103530	83	58039										
KCNH6	0	genome.wustl.edu	37	chr17	61601567	61601567	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	atttactgcaacgacggcttCtgcgaactcttcggctactc	8	13	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	61601567	61601567	C	G	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.144	p.F48L	1.000	pfam_PAS_fold	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	117	0	0	181	43	19.2	-	-	-	G	61601567	C	G	61601567	3	3	676	1	0	0	0	0	1	0	0	0	8090	912	32	2	150	2	KCNH6	17	61601567	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	12509887	61601567	19593643	84	58040										
SRP68	0	genome.wustl.edu	37	chr17	74068454	74068454	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cggccgaagggcgttcgtttTctttattttcttcccctccg	9	13	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	17	74068454	74068454	T	C	SNP	SRP68	ENST00000307877	human	ensembl	69_37n	-1	known	missense	c.119	p.E40G	1.000	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881	46	0	0	54	67	55.37	-	-	-	C	74068454	T	C	74068454	3	2	676	1	0	0	0	0	1	0	0	0	15247	1783	62	5	1828	5	SRP68	17	74068454	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	12466887	74068454	7126756	85	58041										
SETBP1	0	genome.wustl.edu	37	chr18	42643634	42643634	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccaaaaggcagaggaagtccCgagggagtgagagcgaggtc	17	8	0	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	18	42643634	42643634	C	G	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.4762	p.R1588G	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	22	0	0	4	7	63.64	-	-	-	G	42643634	C	G	42643634	3	3	676	1	0	0	0	0	1	0	0	0	14217	644	23	3	4973	3	SETBP1	18	42643634	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		42643634	35433614	86	58042										
PHLPP1	0	genome.wustl.edu	37	chr18	60642850	60642850	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ttaaacagcacaaggccattAtcactgaggtgagaaaacag	9	8	1	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	18	60642850	60642850	A	G	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	missense	c.3976	p.I1326V	0.997	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	64	0	0	51	11	17.74	-	-	-	G	60642850	A	G	60642850	3	3	676	1	0	0	0	0	1	0	0	0	11928	449	16	5	4038	5	PHLPP1	18	60642850	Missense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	17999216	60642850	17434398	87	58043										
SEMA6B	0	genome.wustl.edu	37	chr19	4555004	4555004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tcacctttgaaccacttggaGtcatgtttcacggtgcgcag	10	11	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	4555004	4555004	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	69_37n	-1	known	silent	c.666	p.D222	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6B	HGNC	ENSG00000167680	102	0	0	62	21	25.3	-	-	-	A	4555004	G	A	4555004	2	1	676	1	0	0	0	0	0	0	0	1	14128	1020	36	4		4	SEMA6B	19	4555004	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		4555004	54573979	88	58044										
LPPR2	0	genome.wustl.edu	37	chr19	11468358	11468358	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ctggccttcaccatggcgggAgggagaccgcatctgaagag	15	11	2	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	11468358	11468358	A	G	SNP	LPPR2	ENST00000591608	human	ensembl	69_37n	1	known	silent	c.9	p.G3	0.996	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	99	0	0	115	58	33.53	-	-	-	G	11468358	A	G	11468358	2	3	676	1	0	0	0	0	0	0	0	1	8991	291	11	5		5	LPPR2	19	11468358	Silent	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	6913354	11468358	47660625	89	58045										
ZNF536	0	genome.wustl.edu	37	chr19	31039063	31039063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gggggccttcaagggtctccCtggaatcgacttcagaggag	15	10	3	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	31039063	31039063	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.2537	p.P846L	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	43	0	0	97	19	16.38	-	-	-	T	31039063	C	T	31039063	3	4	676	1	0	0	0	0	1	0	0	0	18070	681	24	4	2547	4	ZNF536	19	31039063	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	19570705	31039063	28089920	90	58046										
ZNF780A	0	genome.wustl.edu	37	chr19	40581287	40581287	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aagggtttctcaccagtatgAatcttctgatgtcgaacaag	9	8	3	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	40581287	40581287	A	G	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	silent	c.1065	p.I355	0.336	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	174	1	0.57	251	35	12.24	-	-	-	G	40581287	A	G	40581287	2	3	676	1	0	0	0	0	0	0	0	1	18245	242	9	5		5	ZNF780A	19	40581287	Silent	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	9542224	40581287	18547696	91	58047										
CIC	0	genome.wustl.edu	37	chr19	42794664	42794664	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cccctggggctgggggtccaGcgacaccttccaaggcaacc	13	16	0	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	42794664	42794664	G	C	SNP	CIC	ENST00000160740	human	ensembl	69_37n	1	known	missense	c.1744	p.A582P	0.029	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	44	0	0	78	21	21.21	-	-	-	C	42794664	G	C	42794664	3	2	676	1	0	0	0	0	1	0	0	0	3453	971	34	4	1782	4	CIC	19	42794664	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	2213377	42794664	16334319	92	58048										
MEGF8	0	genome.wustl.edu	37	chr19	42841097	42841097	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gttctgggcaattacatggtGgtctatggtgaggaggctcc	15	7	2	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	42841097	42841097	G	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	silent	c.1383	p.V461	0.998	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	73	0	0	105	23	17.97	-	-	-	T	42841097	G	T	42841097	2	4	676	1	0	0	0	0	0	0	0	1	9534	1335	47	4		4	MEGF8	19	42841097	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	46433	42841097	16287886	93	58049										
HIF3A	0	genome.wustl.edu	37	chr19	46823710	46823710	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tgtaccccagccaggtggaaGagaccggagtggtgctgtcc	15	11	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	46823710	46823710	G	C	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.1036	p.E346Q	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	48	0	0	28	12	30	-	-	-	C	46823710	G	C	46823710	3	2	676	1	0	0	0	0	1	0	0	0	7156	943	33	2	1094	2	HIF3A	19	46823710	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	3982613	46823710	12305273	94	58050										
PEG3	0	genome.wustl.edu	37	chr19	57325217	57325217	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gcatttgcaggctcaaatatGatcatgctggcatgagtttt	10	7	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	19	57325217	57325217	G	C	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.4593	p.I1531M	0.004	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	180	0	0	140	40	22.1	-	-	-	C	57325217	G	C	57325217	3	2	676	1	0	0	0	0	1	0	0	0	11793	1280	45	2	177	2	PEG3	19	57325217	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	10501507	57325217	1803766	95	58051										
CRLS1	0	genome.wustl.edu	37	chr20	6011956	6011956	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cttacttacatgatcatttcGagagatgtaatgttgattgc	8	6	1	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	20	6011956	6011956	G	A	SNP	CRLS1	ENST00000378863	human	ensembl	69_37n	1	known	silent	c.600	p.S200	1.000	NULL	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766	377	0	0	300	65	17.76	-	-	-	A	6011956	G	A	6011956	2	1	676	1	0	0	0	0	0	0	0	1	3919	1045	37	1		1	CRLS1	20	6011956	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		6011956	57013564	96	58052										
WFDC6	0	genome.wustl.edu	37	chr20	44168036	44168036	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ccaggattggcagaagtcctGagagtcccattttaggaagt	12	8	0	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	20	44168036	44168036	G	T	SNP	WFDC6	ENST00000372670	human	ensembl	69_37n	-1	known	nonsense	c.11	p.S4*	0.000	NULL	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core	-	no_errors	WFDC6	HGNC	ENSG00000243543	111	0	0	169	28	14.21	-	-	-	T	44168036	G	T	44168036	4	4	676	1	0	0	0	0	0	1	0	0	17452	1294	45	2	261	2	WFDC6	20	44168036	Nonsense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	38156080	44168036	18857484	97	58053										
ZNF512B	0	genome.wustl.edu	37	chr20	62597959	62597959	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gtttgctcactccgatgggcTtgctgaccccaacaggccgg	12	14	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	20	62597959	62597959	T	A	SNP	ZNF512B	ENST00000217130	human	ensembl	69_37n	-1	known	missense	c.569	p.K190M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700	99	0	0	213	41	16.08	-	-	-	A	62597959	T	A	62597959	3	1	676	1	0	0	0	0	1	0	0	0	18053	1609	56	5	2161	5	ZNF512B	20	62597959	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09	18429923	62597959	427561	98	58054										
TTC3	0	genome.wustl.edu	37	chr21	38525425	38525425	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tacaacctgtttttctagcaGaaattttctaaatgaagcag	6	7	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	21	38525425	38525425	G	A	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.2588	p.R863K	0.190	superfamily_DEATH-like	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	95	0	0	75	13	14.77	-	-	-	A	38525425	G	A	38525425	3	1	676	1	0	0	0	0	1	0	0	0	16794	942	33	2	2690	2	TTC3	21	38525425	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09		38525425	9604470	99	58055										
MORC2	0	genome.wustl.edu	37	chr22	31338115	31338115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ttaccgctgtccccaggaatCttcataaactgggtcatcac	7	13	4	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	22	31338115	31338115	C	G	SNP	MORC2	ENST00000397641	human	ensembl	69_37n	-1	known	missense	c.570	p.K190N	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	-	no_errors	MORC2	HGNC	ENSG00000133422	100	0	0	80	17	17.53	-	-	-	G	31338115	C	G	31338115	3	3	676	1	0	0	0	0	1	0	0	0	9774	912	32	2	2608	2	MORC2	22	31338115	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09		31338115	19966451	100	58056										
A4GALT	0	genome.wustl.edu	37	chr22	43089316	43089316	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	aggaacgcgccgttgaggacGtagcgggactgggtgcccag	18	10	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	22	43089316	43089316	G	C	SNP	A4GALT	ENST00000249005	human	ensembl	69_37n	-1	known	nonsense	c.642	p.Y214*	0.573	pfam_GlycoTrfase_DXD_sugar-bd_CS	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274	16	0	0	4	13	76.47	-	-	-	C	43089316	G	C	43089316	4	2	676	1	0	0	0	0	0	1	0	0	6	1140	40	3	423	3	A4GALT	22	43089316	Nonsense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	11751201	43089316	8215250	101	58057										
FBLN1	0	genome.wustl.edu	37	chr22	45972921	45972921	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	caggctaacatcatcttcgaCatcacggaagggaacctgcg	10	12	3	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	22	45972921	45972921	C	A	SNP	FBLN1	ENST00000327858	human	ensembl	69_37n	1	known	missense	c.1905	p.D635E	1.000	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942	114	0	0	116	36	23.68	-	-	-	A	45972921	C	A	45972921	3	1	676	1	0	0	0	0	1	0	0	0	5744	477	17	4	2447	4	FBLN1	22	45972921	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	2883605	45972921	5331645	102	58058										
LMF2	0	genome.wustl.edu	37	chr22	50945100	50945100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	ggaacacctggcccacctgcGgagagaggggctgtcaggga	17	11	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	22	50945100	50945100	G	A	SNP	LMF2	ENST00000487499	human	ensembl	69_37n	-1	putative	silent	c.363	p.S121	0.652	NULL	pfam_LMF	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LMF2	HGNC	ENSG00000100258	68	0	0	56	17	23.29	-	-	-	A	50945100	G	A	50945100	2	1	676	1	0	0	0	0	0	0	0	1	8902	1131	39	1		1	LMF2	22	50945100	Silent	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	4972179	50945100	359466	103	58059										
CPT1B	0	genome.wustl.edu	37	chr22	51007768	51007768	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gctggcatttctccaaccttCagctgtaggccttgggaact	10	12	2	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	22	51007768	51007768	C	T	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	silent	c.2318	p.*773	0.996	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	109	0	0	86	21	19.63	-	-	-	T	51007768	C	T	51007768	2	4	676	1	0	0	0	0	0	0	0	1	3862	837	29	2		2	CPT1B	22	51007768	Silent	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	62668	51007768	296798	104	58060										
MXRA5	0	genome.wustl.edu	37	chrX	3241892	3241892	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	tatccttctgtttggaagaaTccagctaaggtgggcttcgg	12	8	1	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	3241892	3241892	T	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.1834	p.I612F	0.994	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	194	0	0	107	33	23.57	-	-	-	A	3241892	T	A	3241892	3	1	676	1	0	0	0	0	1	0	0	0	10075	1435	50	5	6664	5	MXRA5	23	3241892	Missense_Mutation	SNP	T	TCGA-D8-A147-01A-11D-A10Y-09		3241892	152028668	105	58061										
PQBP1	0	genome.wustl.edu	37	chrX	48760064	48760064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	gaccctagctcatactcagaCgccccccggtaagtgacaac	8	16	2	2			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	48760064	48760064	C	T	SNP	PQBP1	ENST00000456306	human	ensembl	69_37n	1	known	missense	c.314	p.T105M	0.994	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PQBP1	HGNC	ENSG00000102103	158	0	0	202	40	16.53	-	-	-	T	48760064	C	T	48760064	3	4	676	1	0	0	0	0	1	0	0	0	12494	535	19	1	651	1	PQBP1	23	48760064	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	45518172	48760064	106510496	106	58062										
MAGEE1	0	genome.wustl.edu	37	chrX	75649513	75649513	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cttagtgcagcccaccgcccCtgacggaccgggaagctccg	12	17	0	1			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	75649513	75649513	C	G	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	missense	c.1190	p.P397R	0.007	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	50	0	0	37	9	19.57	-	-	-	G	75649513	C	G	75649513	3	3	676	1	0	0	0	0	1	0	0	0	9256	681	24	4	1192	4	MAGEE1	23	75649513	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	26889449	75649513	79621047	107	58063										
ALG13	0	genome.wustl.edu	37	chrX	111003141	111003141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cagcatatggtggttcttctCaaattcatggtgctataaat	8	7	3	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	111003141	111003141	C	G	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	missense	c.2779	p.Q927E	0.136	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	226	0	0	149	22	12.87	-	-	-	G	111003141	C	G	111003141	3	3	676	1	0	0	0	0	1	0	0	0	515	827	29	2	3576	2	ALG13	23	111003141	Missense_Mutation	SNP	C	TCGA-D8-A147-01A-11D-A10Y-09	35353628	111003141	44267419	108	58064										
FRMD7	0	genome.wustl.edu	37	chrX	131233522	131233522	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	cctgctttgttatgggcttcAaaagctccagccaaacctgt	8	12	1	0			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	131233522	131233522	A	T	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	nonsense	c.179	p.L60*	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	125	0	0	104	12	10.34	-	-	-	T	131233522	A	T	131233522	4	4	676	1	0	0	0	0	0	1	0	0	6104	131	5	5	2005	5	FRMD7	23	131233522	Nonsense_Mutation	SNP	A	TCGA-D8-A147-01A-11D-A10Y-09	20230381	131233522	24037038	109	58065										
MAGEC1	0	genome.wustl.edu	37	chrX	140993500	140993500	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.218181818181818	24	1.12176467490393e-05	2.82584745762712	3.36139112903226	2.23292410714286	0.176476338697089	0.731329912058276	16	agaattctcagagttctcctGaggggaaggactccctgtct	11	10	3	3			TCGA-D8-A147-01A-11D-A10Y-09	TCGA-D8-A147-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1f292323-cafc-4e45-bb4e-f5428e1a3276	4e55052d-a439-4da0-b799-29bd2d174444	X	140993500	140993500	G	C	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	missense	c.310	p.E104Q	0.834	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	123	0	0	73	18	19.78	-	-	-	C	140993500	G	C	140993500	3	2	676	1	0	0	0	0	1	0	0	0	9251	1291	45	2	316	2	MAGEC1	23	140993500	Missense_Mutation	SNP	G	TCGA-D8-A147-01A-11D-A10Y-09	9759978	140993500	14277060	110	58066										
MMEL1	0	genome.wustl.edu	37	chr1	2524347	2524347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctgactgctcccggaagtgCtgggtggagaagttactcca	13	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	2524347	2524347	C	G	SNP	MMEL1	ENST00000378412	human	ensembl	69_37n	-1	known	missense	c.1926	p.Q642H	0.998	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606	102	0	0	37	27	42.19	-	-	-	G	2524347	C	G	2524347	3	3	677	1	0	0	0	0	1	0	0	0	9717	796	28	4	433	4	MMEL1	1	2524347	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		2524347	246726274	1	58067										
MTOR	0	genome.wustl.edu	37	chr1	11210203	11210203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctaaaccccatgcagctgcaGcagccatccgggccatcttg	9	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	11210203	11210203	G	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.4550	p.A1517V	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	74	0	0	38	16	29.63	-	-	-	A	11210203	G	A	11210203	3	1	677	1	0	0	0	0	1	0	0	0	10026	971	34	4	3211	4	MTOR	1	11210203	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	8685856	11210203	238040418	2	58068										
CTRC	0	genome.wustl.edu	37	chr1	15771218	15771218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaaaccatggtgtgcgctgGgggcgatggcgtcatctcag	16	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	15771218	15771218	G	A	SNP	CTRC	ENST00000375949	human	ensembl	69_37n	1	known	missense	c.611	p.G204E	0.997	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	CTRC	HGNC	ENSG00000162438	90	0	0	15	26	63.41	-	-	-	A	15771218	G	A	15771218	3	1	677	1	0	0	0	0	1	0	0	0	4059	1232	43	4	633	4	CTRC	1	15771218	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4561015	15771218	233479403	3	58069										
SLC25A34	0	genome.wustl.edu	37	chr1	16065220	16065220	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagccggtggacacagctggCagggtgagcaggggcgggtc	20	10	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	16065220	16065220	C	T	SNP	SLC25A34	ENST00000294454	human	ensembl	69_37n	1	known	silent	c.729	p.G243	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A34	HGNC	ENSG00000162461	58	0	0	11	5	31.25	-	-	-	T	16065220	C	T	16065220	2	4	677	1	0	0	0	0	0	0	0	1	14587	697	25	4		4	SLC25A34	1	16065220	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	294002	16065220	233185401	4	58070										
SPEN	0	genome.wustl.edu	37	chr1	16255589	16255589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttcaagccatgttgaagtgGtggagaaggaaggcaggctt	15	5	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	16255589	16255589	G	A	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	missense	c.2854	p.V952M	0.001	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	46	0	0	14	13	48.15	-	-	-	A	16255589	G	A	16255589	3	1	677	1	0	0	0	0	1	0	0	0	15129	1261	44	4	2896	4	SPEN	1	16255589	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	190369	16255589	232995032	5	58071										
SPEN	0	genome.wustl.edu	37	chr1	16265817	16265817	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacgtgctgcagatcttcccGccctgtgagttctctgagag	11	12	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	16265817	16265817	G	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	silent	c.10890	p.P3630	0.923	pfam_SPOC_C,superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	165	0	0	29	33	53.23	-	-	-	T	16265817	G	T	16265817	2	4	677	1	0	0	0	0	0	0	0	1	15129	1074	38	3		3	SPEN	1	16265817	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	10228	16265817	232984804	6	58072										
EPHA8	0	genome.wustl.edu	37	chr1	22924193	22924193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctccggggaagtctgctacgGgaggctgcgggtgccagggc	19	11	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	22924193	22924193	G	A	SNP	EPHA8	ENST00000166244	human	ensembl	69_37n	1	known	missense	c.1955	p.G652E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	24	0	0	4	5	55.56	-	-	-	A	22924193	G	A	22924193	3	1	677	1	0	0	0	0	1	0	0	0	5210	1232	43	4	2170	4	EPHA8	1	22924193	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6658376	22924193	226326428	7	58073										
HMGB4	0	genome.wustl.edu	37	chr1	34330027	34330027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggaagaaatgatgaattatGttggcaagaggaagaaacgg	14	2	0	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	34330027	34330027	G	A	SNP	HMGB4	ENST00000519684	human	ensembl	69_37n	1	known	missense	c.235	p.V79I	0.000	superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB4	HGNC	ENSG00000176256	74	0	0	53	19	26.39	-	-	-	A	34330027	G	A	34330027	3	1	677	1	0	0	0	0	1	0	0	0	7279	1377	48	4	237	4	HMGB4	1	34330027	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11405834	34330027	214920594	8	58074										
HPCAL4	0	genome.wustl.edu	37	chr1	40149705	40149705	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcttctgctcgaagctgccGcgggaggtgaccgacagggc	16	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	40149705	40149705	G	A	SNP	HPCAL4	ENST00000372844	human	ensembl	69_37n	-1	known	silent	c.282	p.R94	0.991	pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983	49	0	0	21	18	46.15	-	-	-	A	40149705	G	A	40149705	2	1	677	1	0	0	0	0	0	0	0	1	7382	1074	38	1		1	HPCAL4	1	40149705	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5819678	40149705	209100916	9	58075										
DMAP1	0	genome.wustl.edu	37	chr1	44684860	44684860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcagagcagcggcgcacgGaacgcaaggcccccaaaaag	13	14	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	44684860	44684860	G	A	SNP	DMAP1	ENST00000315913	human	ensembl	69_37n	1	known	missense	c.853	p.E285K	0.998	pfam_DMAP1	pfam_DMAP1,superfamily_Homeodomain-like	-	no_errors	DMAP1	HGNC	ENSG00000178028	32	0	0	5	7	58.33	-	-	-	A	44684860	G	A	44684860	3	1	677	1	0	0	0	0	1	0	0	0	4612	1175	41	2	875	2	DMAP1	1	44684860	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4535155	44684860	204565761	10	58076										
CYP4X1	0	genome.wustl.edu	37	chr1	47501732	47501732	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccatatttgaactcagcaaaAtcatatttcaccgcttgtac	4	11	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	47501732	47501732	A	G	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	1	known	missense	c.664	p.I222V	0.891	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	121	0	0	59	42	41.58	-	-	-	G	47501732	A	G	47501732	3	3	677	1	0	0	0	0	1	0	0	0	4224	101	4	5	686	5	CYP4X1	1	47501732	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	2816872	47501732	201748889	11	58077										
INADL	0	genome.wustl.edu	37	chr1	62330274	62330274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gactgtctattcccaggaggCacagccgtatggctattgcc	11	12	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	62330274	62330274	C	T	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.2804	p.A935V	0.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	33	0	0	9	15	62.5	-	-	-	T	62330274	C	T	62330274	3	4	677	1	0	0	0	0	1	0	0	0	7785	710	25	4	2878	4	INADL	1	62330274	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14828542	62330274	186920347	12	58078										
ELTD1	0	genome.wustl.edu	37	chr1	79403912	79403912	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttggtgaaagatctgtcacaGaatttctatagacttcttgt	8	6	4	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	79403912	79403912	G	A	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.449	p.S150F	0.741	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	73	0	0	33	44	57.14	-	-	-	A	79403912	G	A	79403912	3	1	677	1	0	0	0	0	1	0	0	0	5121	942	33	2	1667	2	ELTD1	1	79403912	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	17073638	79403912	169846709	13	58079										
ABCA4	0	genome.wustl.edu	37	chr1	94463492	94463492	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgggagaggaggagctggaaGatcctcgccagggaggagga	20	6	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	94463492	94463492	G	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.6654	p.I2218M	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	149	0	0	25	48	65.75	-	-	-	C	94463492	G	C	94463492	3	2	677	1	0	0	0	0	1	0	0	0	34	932	33	2	179	2	ABCA4	1	94463492	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	15059580	94463492	154787129	14	58080										
ABCA4	0	genome.wustl.edu	37	chr1	94526200	94526200	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacaccctgatttttcaaggTctccttcagtcgcaactcct	6	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	94526200	94526200	T	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.2053	p.T685S	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	80	0	0	56	11	16.42	-	-	-	A	94526200	T	A	94526200	3	1	677	1	0	0	0	0	1	0	0	0	34	1667	58	5	4916	5	ABCA4	1	94526200	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	62708	94526200	154724421	15	58081										
STXBP3	0	genome.wustl.edu	37	chr1	109301146	109301146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttaagtctgtagattgtttCttacatgattttgcaagtaa	7	4	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	109301146	109301146	C	G	SNP	STXBP3	ENST00000370008	human	ensembl	69_37n	1	known	missense	c.273	p.F91L	0.999	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266	54	0	0	21	32	60.38	-	-	-	G	109301146	C	G	109301146	3	3	677	1	0	0	0	0	1	0	0	0	15445	912	32	2	291	2	STXBP3	1	109301146	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14774946	109301146	139949475	16	58082										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	113000008	113000008	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tagcaaatggtaaggatgttGagttacttttgcctaccagc	10	7	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	113000008	113000008	G	C	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	missense	c.1894	p.E632Q	0.999	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	37	0	0	7	16	69.57	-	-	-	C	113000008	G	C	113000008	3	2	677	1	0	0	0	0	1	0	0	0	4078	1291	45	2	1908	2	CTTNBP2NL	1	113000008	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3698862	113000008	136250613	17	58083										
NOTCH2	0	genome.wustl.edu	37	chr1	120462993	120462993	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgatcaatggggtcatcttCttctgagagtaaggcctcat	10	9	6	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	120462993	120462993	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.5338	p.E1780K	0.998	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	100	0	0	39	5	11.36	-	-	-	T	120462993	C	T	120462993	3	4	677	1	0	0	0	0	1	0	0	0	10620	922	32	2	2097	2	NOTCH2	1	120462993	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7462985	120462993	128787628	18	58084										
VPS45	0	genome.wustl.edu	37	chr1	150054064	150054064	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaacagcaaaaactagaatcAatagcagacatgaaggtaaa	8	6	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	150054064	150054064	A	G	SNP	VPS45	ENST00000369130	human	ensembl	69_37n	1	known	silent	c.921	p.S307	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	81	0	0	68	43	38.74	-	-	-	G	150054064	A	G	150054064	2	3	677	1	0	0	0	0	0	0	0	1	17308	117	5	5		5	VPS45	1	150054064	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	29591071	150054064	99196557	19	58085										
CTSS	0	genome.wustl.edu	37	chr1	150722569	150722569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacagcttctttcaggacatCttctctgccataaggaagtt	7	11	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	150722569	150722569	C	G	SNP	CTSS	ENST00000368985	human	ensembl	69_37n	-1	known	missense	c.706	p.D236H	0.962	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSS	HGNC	ENSG00000163131	108	0	0	48	31	39.24	-	-	-	G	150722569	C	G	150722569	3	3	677	1	0	0	0	0	1	0	0	0	4073	913	32	2	301	2	CTSS	1	150722569	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	668505	150722569	98528052	20	58086										
CTSS	0	genome.wustl.edu	37	chr1	150724445	150724445	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcagctgtgcttccagggCccccacagcactgaaagccc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	150724445	150724445	C	-	DEL	CTSS	ENST00000368985	human	ensembl	69_37n	-1	known	frame_shift_del	c.439	p.A147fs	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSS	HGNC	ENSG00000163131	88	0	0	70	33	31.73	-	-	-	-	150724445	C	-	150724445	7	5	677	1	0	1	0	1	0	0	0	0	4073	739	26	0	572	0	CTSS	1	150724445	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	1876	150724445	98526176	21	58087										
TCHH	0	genome.wustl.edu	37	chr1	152083851	152083853	+	In_Frame_Del	DEL	CTC	CTC	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcagccgctgctcgcgcctCtcctcctgctcgagtctctc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	152083851	152083853	CTC	-	DEL	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	in_frame_del	c.1842_1840	p.E614in_frame_del	0.000:0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	70	0	0	66	19	22.35	-	-	-	-	152083853	CTC	-	152083851	7	5	677	1	0	1	0	1	0	0	0	0	15795	912	32	0	3993	0	TCHH	1	152083851	In_Frame_Del	DEL	CTC	TCGA-D8-A1J8-01A-11D-A13L-09	1359406	152083851	97166770	22	58088										
NPR1	0	genome.wustl.edu	37	chr1	153661986	153661986	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgctgtcatagacaactttGatgtgtacaaggtgagggtg	13	5	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	153661986	153661986	G	C	SNP	NPR1	ENST00000368680	human	ensembl	69_37n	1	known	missense	c.2746	p.D916H	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	201	0	0	140	71	33.65	-	-	-	C	153661986	G	C	153661986	3	2	677	1	0	0	0	0	1	0	0	0	10667	1290	45	2	2816	2	NPR1	1	153661986	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1578135	153661986	95588635	23	58089										
DENND4B	0	genome.wustl.edu	37	chr1	153914454	153914454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggacagcacagcgatggcacGccggctgcgcacagctctgc	14	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	153914454	153914454	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.946	p.R316C	0.867	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	37	0	0	7	6	46.15	-	-	-	A	153914454	G	A	153914454	3	1	677	1	0	0	0	0	1	0	0	0	4470	1087	38	1	3636	1	DENND4B	1	153914454	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	252468	153914454	95336167	24	58090										
DCST2	0	genome.wustl.edu	37	chr1	155001812	155001812	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcacgaggaggaggtgtcgGataaggttgaaggtctccag	17	6	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	155001812	155001812	G	C	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	missense	c.1239	p.I413M	0.064	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	44	0	0	54	28	34.15	-	-	-	C	155001812	G	C	155001812	3	2	677	1	0	0	0	0	1	0	0	0	4334	1164	41	2	1114	2	DCST2	1	155001812	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1087358	155001812	94248809	25	58091										
PAQR6	0	genome.wustl.edu	37	chr1	156214536	156214536	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcctcttcccgggccgggCcaggcgtgccctcaccgatg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	156214536	156214536	C	-	DEL	PAQR6	ENST00000335852	human	ensembl	69_37n	-1	known	frame_shift_del	c.458	p.G153fs	0.012	NULL	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781	79	0	0	26	22	45.83	-	-	-	-	156214536	C	-	156214536	7	5	677	1	0	1	0	1	0	0	0	0	11512	739	26	0	605	0	PAQR6	1	156214536	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	1212724	156214536	93036085	26	58092										
NES	0	genome.wustl.edu	37	chr1	156639698	156639698	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcccctggctccctcccctCctcctgatcctcctctccct	4	24	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	156639698	156639698	C	A	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	nonsense	c.4282	p.E1428*	0.001	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	14	0	0	13	6	30	-	-	-	A	156639698	C	A	156639698	4	1	677	1	0	0	0	0	0	1	0	0	10409	864	30	2	587	2	NES	1	156639698	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	425162	156639698	92610923	27	58093										
NES	0	genome.wustl.edu	37	chr1	156640739	156640739	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctctgaccccaacatgacctCtggggaggcttggtcacccc	10	16	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	156640739	156640739	C	G	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.3241	p.E1081Q	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	18	0	0	3	5	62.5	-	-	-	G	156640739	C	G	156640739	3	3	677	1	0	0	0	0	1	0	0	0	10409	922	32	2	1628	2	NES	1	156640739	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1041	156640739	92609882	28	58094										
FCRL5	0	genome.wustl.edu	37	chr1	157509116	157509116	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccctcaaaaatcaggtcctCaggagagctgaggttgagga	12	9	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	157509116	157509116	C	T	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1162	p.E388K	0.000	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	84	0	0	49	29	37.18	-	-	-	T	157509116	C	T	157509116	3	4	677	1	0	0	0	0	1	0	0	0	5844	835	29	2	1815	2	FCRL5	1	157509116	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	868377	157509116	91741505	29	58095										
CD1B	0	genome.wustl.edu	37	chr1	158299647	158299647	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacagcaggactaaccttgtCtttgcagatctgcttttcct	7	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	158299647	158299647	C	A	SNP	CD1B	ENST00000368168	human	ensembl	69_37n	-1	known	missense	c.602	p.R201I	0.395	superfamily_MHC_I/II-like_Ag-recog,pfscan_Ig-like	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1B	HGNC	ENSG00000158485	33	0	0	30	11	26.83	-	-	-	A	158299647	C	A	158299647	3	1	677	1	0	0	0	0	1	0	0	0	3004	913	32	2	415	2	CD1B	1	158299647	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	790531	158299647	90950974	30	58096										
OR10K1	0	genome.wustl.edu	37	chr1	158435690	158435690	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttggctcctctcactccttCctgctggcagccatgggcta	9	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	158435690	158435690	C	T	SNP	OR10K1	ENST00000289451	human	ensembl	69_37n	1	known	silent	c.339	p.F113	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285	186	0	0	137	74	34.91	-	-	-	T	158435690	C	T	158435690	2	4	677	1	0	0	0	0	0	0	0	1	10986	854	30	2		2	OR10K1	1	158435690	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	136043	158435690	90814931	31	58097										
FCRL6	0	genome.wustl.edu	37	chr1	159778911	159778911	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacaccttgcaggacaggggCcctcacccagaactctgcat	9	16	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	159778911	159778911	C	T	SNP	FCRL6	ENST00000368106	human	ensembl	69_37n	1	known	silent	c.480	p.G160	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL6	HGNC	ENSG00000181036	56	0	0	28	15	34.88	-	-	-	T	159778911	C	T	159778911	2	4	677	1	0	0	0	0	0	0	0	1	5845	726	26	4		4	FCRL6	1	159778911	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1343221	159778911	89471710	32	58098										
MAEL	0	genome.wustl.edu	37	chr1	166974320	166974320	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgctttctccagtctgatgAtagaaccagagtcaactggt	9	9	3	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	166974320	166974320	A	T	SNP	MAEL	ENST00000367872	human	ensembl	69_37n	1	known	missense	c.656	p.D219V	1.000	superfamily_CH-domain	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194	69	0	0	53	25	32.05	-	-	-	T	166974320	A	T	166974320	3	4	677	1	0	0	0	0	1	0	0	0	9221	333	12	5	682	5	MAEL	1	166974320	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	7195409	166974320	82276301	33	58099										
ADCY10	0	genome.wustl.edu	37	chr1	167873162	167873162	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgtggtagttgaggatctcCaccaactgctcagcccctct	9	13	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	167873162	167873162	C	T	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	silent	c.216	p.V72	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	130	0	0	103	57	35.62	-	-	-	T	167873162	C	T	167873162	2	4	677	1	0	0	0	0	0	0	0	1	293	581	21	4		4	ADCY10	1	167873162	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	898842	167873162	81377459	34	58100										
PAPPA2	0	genome.wustl.edu	37	chr1	176762724	176762724	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgttccccattgtgtgtaatCccccccagtgaccccgtgat							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	176762724	176762724	C	-	DEL	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	frame_shift_del	c.5049	p.S1686fs	0.506	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	223	0	0	260	95	26.69	-	-	-	-	176762724	C	-	176762724	7	5	677	1	0	1	0	1	0	0	0	0	11506	845	30	0	5176	0	PAPPA2	1	176762724	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	8889562	176762724	72487897	35	58101										
ZNF648	0	genome.wustl.edu	37	chr1	182026740	182026740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cccaagaggttgcatctgacCtaacaatttgtgtgcgagac	10	10	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	182026740	182026740	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.406	p.G136S	0.017	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	64	0	0	62	14	18.42	-	-	-	T	182026740	C	T	182026740	3	4	677	1	0	0	0	0	1	0	0	0	18159	681	24	4	1304	4	ZNF648	1	182026740	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5264016	182026740	67223881	36	58102										
SMG7	0	genome.wustl.edu	37	chr1	183519915	183519915	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caccagccagccagtctcctCattcctctaacccaagcagc	5	19	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	183519915	183519915	C	T	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.3025	p.H1009Y	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	133	0	0	134	58	30.21	-	-	-	T	183519915	C	T	183519915	3	4	677	1	0	0	0	0	1	0	0	0	14887	826	29	2	3245	2	SMG7	1	183519915	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1493175	183519915	65730706	37	58103										
HMCN1	0	genome.wustl.edu	37	chr1	186147874	186147874	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaacttgccctgaaggctctGaggcaagccatgacacatgt	10	11	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	186147874	186147874	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.16270	p.E5424K	1.000	superfamily_Growth_fac_rcpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	71	0	0	53	36	40.45	-	-	-	A	186147874	G	A	186147874	3	1	677	1	0	0	0	0	1	0	0	0	7271	1291	45	2	16684	2	HMCN1	1	186147874	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2627959	186147874	63102747	38	58104										
PTGS2	0	genome.wustl.edu	37	chr1	186643896	186643896	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagacatttccttttctccTgtgaaggcgatgaagacaga	10	9	1	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	186643896	186643896	T	C	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	splice_site	c.1406-2	e10-2	1.000	-	-	-	no_errors	PTGS2	HGNC	ENSG00000073756	58	0	0	67	25	27.17	-	-	-	C	186643896	T	C	186643896	5	2	677	1	0	0	0	0	0	0	1	0	12837	1594	55	5	414	5	PTGS2	1	186643896	Splice_Site	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	496022	186643896	62606725	39	58105										
PTGS2	0	genome.wustl.edu	37	chr1	186648511	186648511	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaatcgcacttatactggtCaaatcccacactcatacata	3	13	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	186648511	186648511	C	T	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	missense	c.112	p.D38N	1.000	pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	116	0	0	117	45	27.78	-	-	-	T	186648511	C	T	186648511	3	4	677	1	0	0	0	0	1	0	0	0	12837	826	29	2	1738	2	PTGS2	1	186648511	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4615	186648511	62602110	40	58106										
FAM5C	0	genome.wustl.edu	37	chr1	190068091	190068091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcgggtgcggttgtctggtGcgcatgtcaggcaggcagag	19	8	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	190068091	190068091	G	A	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1358	p.A453V	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	37	0	0	27	12	30.77	-	-	-	A	190068091	G	A	190068091	3	1	677	1	0	0	0	0	1	0	0	0	5639	1319	46	4	946	4	FAM5C	1	190068091	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3419580	190068091	59182530	41	58107										
KCNT2	0	genome.wustl.edu	37	chr1	196309545	196309545	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acctggacacattgctttttCtctgctggtcttggttttta	8	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	196309545	196309545	C	G	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1709	p.R570T	0.775	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	143	0	0	161	74	31.49	-	-	-	G	196309545	C	G	196309545	3	3	677	1	0	0	0	0	1	0	0	0	8146	913	32	2	1750	2	KCNT2	1	196309545	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6241454	196309545	52941076	42	58108										
CRB1	0	genome.wustl.edu	37	chr1	197404570	197404570	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtatccatggcaactgctctGacagagttgcagcctaccac	9	13	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	197404570	197404570	G	A	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.3577	p.D1193N	0.895	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	99	0	0	80	22	21.57	-	-	-	A	197404570	G	A	197404570	3	1	677	1	0	0	0	0	1	0	0	0	3878	1290	45	2	3611	2	CRB1	1	197404570	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1095025	197404570	51846051	43	58109										
CACNA1S	0	genome.wustl.edu	37	chr1	201028335	201028335	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	accctggccttgaaggccatGagcttgaggatcatctccag	11	12	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	201028335	201028335	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.3507	p.L1169	0.999	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	87	0	0	93	34	26.77	-	-	-	A	201028335	G	A	201028335	2	1	677	1	0	0	0	0	0	0	0	1	2572	1277	45	2		2	CACNA1S	1	201028335	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3623765	201028335	48222286	44	58110										
UBE2T	0	genome.wustl.edu	37	chr1	202301082	202301082	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attatcaagcatctcttcctCatcagcctaaagaggagaca	6	11	4	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	202301082	202301082	C	T	SNP	UBE2T	ENST00000367274	human	ensembl	69_37n	-1	known	missense	c.475	p.E159K	0.030	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152	150	0	0	179	60	25.1	-	-	-	T	202301082	C	T	202301082	3	4	677	1	0	0	0	0	1	0	0	0	16970	835	29	2	122	2	UBE2T	1	202301082	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1272747	202301082	46949539	45	58111										
ADORA1	0	genome.wustl.edu	37	chr1	203098124	203098124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcttcatcgtgtcgctggCggtggctgatgtggccgtgg	17	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	203098124	203098124	C	T	SNP	ADORA1	ENST00000309502	human	ensembl	69_37n	1	known	missense	c.155	p.A52V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adenosn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485	127	0	0	76	32	29.63	-	-	-	T	203098124	C	T	203098124	3	4	677	1	0	0	0	0	1	0	0	0	326	768	27	1	157	1	ADORA1	1	203098124	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	797042	203098124	46152497	46	58112										
REN	0	genome.wustl.edu	37	chr1	204125433	204125433	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcacagagcaaggtggatGaccccacagacaccctgggg	12	13	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	204125433	204125433	G	T	SNP	REN	ENST00000272190	human	ensembl	69_37n	-1	known	nonsense	c.833	p.S278*	0.084	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	REN	HGNC	ENSG00000143839	39	0	0	27	11	28.95	-	-	-	T	204125433	G	T	204125433	4	4	677	1	0	0	0	0	0	1	0	0	13307	1294	45	2	399	2	REN	1	204125433	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1027309	204125433	45125188	47	58113										
SLC26A9	0	genome.wustl.edu	37	chr1	205904876	205904876	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtatgtccggtccttcttctCaaactcatcgtcgaagaggg	10	11	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	205904876	205904876	C	G	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.73	p.E25Q	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	194	0	0	172	56	24.56	-	-	-	G	205904876	C	G	205904876	3	3	677	1	0	0	0	0	1	0	0	0	14613	835	29	2	2678	2	SLC26A9	1	205904876	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1779443	205904876	43345745	48	58114										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209935932	209935932	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcatctgcagggatctgtctGaccacctctcctcacaggct	9	15	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	209935932	209935932	G	C	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	missense	c.418	p.D140H	0.001	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	49	0	0	62	17	21.52	-	-	-	C	209935932	G	C	209935932	3	2	677	1	0	0	0	0	1	0	0	0	16538	1290	45	2	424	2	TRAF3IP3	1	209935932	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4031056	209935932	39314689	49	58115										
VASH2	0	genome.wustl.edu	37	chr1	213146162	213146162	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcacacagtcaagaaggtCaagattgggctgtacgtccc	11	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	213146162	213146162	C	G	SNP	VASH2	ENST00000517399	human	ensembl	69_37n	1	known	silent	c.738	p.V246	1.000	NULL	NULL	-	no_errors	VASH2	HGNC	ENSG00000143494	97	0	0	88	83	48.54	-	-	-	G	213146162	C	G	213146162	2	3	677	1	0	0	0	0	0	0	0	1	17223	813	29	2		2	VASH2	1	213146162	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3210230	213146162	36104459	50	58116										
USH2A	0	genome.wustl.edu	37	chr1	216370014	216370014	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttctcccaggagatattgaGagagtacgaagagaggggaa	14	6	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	216370014	216370014	G	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.4132	p.L1378V	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	141	0	0	171	61	26.29	-	-	-	C	216370014	G	C	216370014	3	2	677	1	0	0	0	0	1	0	0	0	17133	942	33	2	11706	2	USH2A	1	216370014	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3223852	216370014	32880607	51	58117										
IARS2	0	genome.wustl.edu	37	chr1	220316389	220316389	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcgtgtgcaatgcgagactcAtttcttggaagcatccctgg	12	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	220316389	220316389	A	G	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	silent	c.2664	p.S888	0.023	superfamily_tRNAsynth_1a_anticodon-bd	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	117	0	0	178	73	29.08	-	-	-	G	220316389	A	G	220316389	2	3	677	1	0	0	0	0	0	0	0	1	7528	204	8	5		5	IARS2	1	220316389	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	3946375	220316389	28934232	52	58118										
FAM177B	0	genome.wustl.edu	37	chr1	222920391	222920391	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggggccctacctacgattttGggcaggacgaatagcaagca	13	10	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	222920391	222920391	G	C	SNP	FAM177B	ENST00000360827	human	ensembl	69_37n	1	known	missense	c.209	p.W70S	1.000	NULL	NULL	-	no_errors	FAM177B	HGNC	ENSG00000197520	144	0	0	162	63	28	-	-	-	C	222920391	G	C	222920391	3	2	677	1	0	0	0	0	1	0	0	0	5542	1357	47	4	215	4	FAM177B	1	222920391	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2604002	222920391	26330230	53	58119										
ENAH	0	genome.wustl.edu	37	chr1	225707007	225707007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccagtctctccagcctctctCgttcttgtctttcttgcctc	5	17	5	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	225707007	225707007	C	T	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.695	p.R232Q	0.988	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	290	0	0	356	112	23.93	-	-	-	T	225707007	C	T	225707007	3	4	677	1	0	0	0	0	1	0	0	0	5148	884	31	1	1124	1	ENAH	1	225707007	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2786616	225707007	23543614	54	58120										
ENAH	0	genome.wustl.edu	37	chr1	225707048	225707048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcccgatccaggcgttcctgCcgctccaggcgttcctgccg	11	18	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	225707048	225707048	C	T	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	silent	c.654	p.R218	0.909	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	199	0	0	286	98	25.52	-	-	-	T	225707048	C	T	225707048	2	4	677	1	0	0	0	0	0	0	0	1	5148	726	26	4		4	ENAH	1	225707048	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	41	225707048	23543573	55	58121										
OBSCN	0	genome.wustl.edu	37	chr1	228486990	228486990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caggttcacagagggtctgaGgaatgaagaggccatggaag	16	6	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	228486990	228486990	G	A	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	missense	c.3311	p.R1104K	0.042	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	24	0	0	27	10	27.03	-	-	-	A	228486990	G	A	228486990	3	1	677	1	0	0	0	0	1	0	0	0	10885	1015	35	4		4	OBSCN	1	228486990	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2779942	228486990	20763631	56	58122										
OBSCN	0	genome.wustl.edu	37	chr1	228495850	228495850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacgggggctggttgatgcgGaggtgacggccgatgaggat	20	6	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	228495850	228495850	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.12505	p.E4169K	0.970	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	89	0	0	107	31	22.46	-	-	-	A	228495850	G	A	228495850	3	1	677	1	0	0	0	0	1	0	0	0	10885	1175	41	2	12687	2	OBSCN	1	228495850	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	8860	228495850	20754771	57	58123										
URB2	0	genome.wustl.edu	37	chr1	229773599	229773599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagaagctgggccaagaggCcccagcagcactgtctgagc	14	13	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	229773599	229773599	C	A	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.3239	p.A1080D	0.001	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	38	0	0	18	10	35.71	-	-	-	A	229773599	C	A	229773599	3	1	677	1	0	0	0	0	1	0	0	0	17122	739	26	4	3249	4	URB2	1	229773599	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1277749	229773599	19477022	58	58124										
NID1	0	genome.wustl.edu	37	chr1	236212244	236212244	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaagagcccgggatgggattCtttggccgggggttcactcg	17	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	236212244	236212244	C	A	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	nonsense	c.271	p.E91*	0.059	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	103	0	0	49	14	22.22	-	-	-	A	236212244	C	A	236212244	4	1	677	1	0	0	0	0	0	1	0	0	10486	922	32	2	3548	2	NID1	1	236212244	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6438645	236212244	13038377	59	58125										
ACTN2	0	genome.wustl.edu	37	chr1	236914796	236914796	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcactgcgcatgagcagttCaaggccacgctgcccgaggc	12	14	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	236914796	236914796	C	G	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.1683	p.F561L	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	44	0	0	55	12	17.91	-	-	-	G	236914796	C	G	236914796	3	3	677	1	0	0	0	0	1	0	0	0	205	825	29	2	1741	2	ACTN2	1	236914796	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	702552	236914796	12335825	60	58126										
RYR2	0	genome.wustl.edu	37	chr1	237532877	237532877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacactcctctacggacatgCcatattgctgcgccattcct	6	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	237532877	237532877	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.347	p.A116V	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR,smart_MIR_motif,prints_Ryan_recept,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	207	0	0	229	72	23.84	-	-	-	T	237532877	C	T	237532877	3	4	677	1	0	0	0	0	1	0	0	0	13855	739	26	4	375	4	RYR2	1	237532877	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	618081	237532877	11717744	61	58127										
WDR64	0	genome.wustl.edu	37	chr1	241959640	241959642	+	In_Frame_Del	DEL	AAG	AAG	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcagatggcattacaggaAagaagaagggaggtcatgtt							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	1	241959640	241959642	AAG	-	DEL	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	in_frame_del	c.3130_3132	p.K1046in_frame_del	0.882:0.909:0.922	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	76	0	0	123	31	20.13	-	-	-	-	241959642	AAG	-	241959640	7	5	677	1	0	1	0	1	0	0	0	0	17412	15	1	0	3232	0	WDR64	1	241959640	In_Frame_Del	DEL	AAG	TCGA-D8-A1J8-01A-11D-A13L-09	4426763	241959640	7290981	62	58128										
DNMT3A	0	genome.wustl.edu	37	chr2	25523047	25523047	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcccaggccgccccaccttCcgtgccgtggtgctgggctc	12	19	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	25523047	25523047	C	T	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	silent	c.138	p.R46	0.999	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	71	0	0	47	16	25.4	-	-	-	T	25523047	C	T	25523047	2	4	677	1	0	0	0	0	0	0	0	1	4711	842	30	2		2	DNMT3A	2	25523047	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		25523047	217676326	63	58129										
PLB1	0	genome.wustl.edu	37	chr2	28771790	28771790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acgggaggccaatgaagtgtCcctctcaggtaggagggact	15	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	28771790	28771790	C	T	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	missense	c.1033	p.P345S	1.000	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	73	0	0	46	25	35.21	-	-	-	T	28771790	C	T	28771790	3	4	677	1	0	0	0	0	1	0	0	0	12098	855	30	2	1091	2	PLB1	2	28771790	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3248743	28771790	214427583	64	58130										
YPEL5	0	genome.wustl.edu	37	chr2	30379522	30379522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacttcagccataaaaatggGcagaattttccttgatcata	6	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	30379522	30379522	G	A	SNP	YPEL5	ENST00000261353	human	ensembl	69_37n	1	known	missense	c.5	p.G2D	1.000	pfam_Yippee	pfam_Yippee	-	no_errors	YPEL5	HGNC	ENSG00000119801	98	0	0	86	29	25.22	-	-	-	A	30379522	G	A	30379522	3	1	677	1	0	0	0	0	1	0	0	0	17590	1203	42	4	7	4	YPEL5	2	30379522	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1607732	30379522	212819851	65	58131										
PRKD3	0	genome.wustl.edu	37	chr2	37499526	37499526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctataacgattacttaccacAttctcctgaatctgacaatt	3	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	37499526	37499526	A	G	SNP	PRKD3	ENST00000452104	human	ensembl	69_37n	-1	novel	missense	c.41	p.M14T	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon	PRKD3	HGNC	ENSG00000115825	51	0	0	48	24	33.33	-	-	-	G	37499526	A	G	37499526	3	3	677	1	0	0	0	0	1	0	0	0	12601	214	8	5	1003	5	PRKD3	2	37499526	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	7120004	37499526	205699847	66	58132										
DHX57	0	genome.wustl.edu	37	chr2	39081307	39081307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccgtggtgcagtataacagtCtggtggctgaggacttacac	13	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	39081307	39081307	C	T	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.1919	p.R640K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	87	0	0	78	45	36.59	-	-	-	T	39081307	C	T	39081307	3	4	677	1	0	0	0	0	1	0	0	0	4549	913	32	2	2305	2	DHX57	2	39081307	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1581781	39081307	204118066	67	58133										
DHX57	0	genome.wustl.edu	37	chr2	39082249	39082249	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacggtcagacccaccctctCtgctctttctttagcaacgc	6	17	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	39082249	39082249	C	T	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.1855	p.E619K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	132	0	0	78	48	38.1	-	-	-	T	39082249	C	T	39082249	3	4	677	1	0	0	0	0	1	0	0	0	4549	922	32	2	2373	2	DHX57	2	39082249	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	942	39082249	204117124	68	58134										
DHX57	0	genome.wustl.edu	37	chr2	39083579	39083579	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gagtgattgcctctcttgcaGaatggactggaactgtctgg	13	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	39083579	39083579	G	A	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	silent	c.1612	p.L538	1.000	NULL	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	76	0	0	54	18	25	-	-	-	A	39083579	G	A	39083579	2	1	677	1	0	0	0	0	0	0	0	1	4549	933	33	2		2	DHX57	2	39083579	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1330	39083579	204115794	69	58135										
DHX57	0	genome.wustl.edu	37	chr2	39088557	39088557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctacacttctttctattcttCcaacaatttgatttgggggc	6	10	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	39088557	39088557	C	T	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.995	p.G332E	0.031	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	88	0	0	83	41	33.06	-	-	-	T	39088557	C	T	39088557	3	4	677	1	0	0	0	0	1	0	0	0	4549	855	30	2	3245	2	DHX57	2	39088557	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4978	39088557	204110816	70	58136										
EML4	0	genome.wustl.edu	37	chr2	42530295	42530295	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tagcagaaggaaaggcagatCaatttttagtaggcacatca	10	6	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	42530295	42530295	C	T	SNP	EML4	ENST00000318522	human	ensembl	69_37n	1	known	nonsense	c.1693	p.Q565*	1.000	superfamily_Quinonprotein_ADH-like	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	130	0	0	130	68	34.34	-	-	-	T	42530295	C	T	42530295	4	4	677	1	0	0	0	0	0	1	0	0	5136	827	29	2	1751	2	EML4	2	42530295	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3441738	42530295	200669078	71	58137										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452623	43452623	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgagcagggctgtgccgccgCcccccgacggctccttaagg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	43452623	43452623	C	-	DEL	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	frame_shift_del	c.320	p.G107fs	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	34	0	0	11	6	35.29	-	-	-	-	43452623	C	-	43452623	7	5	677	1	0	1	0	1	0	0	0	0	17743	739	26	0	1168	0	ZFP36L2	2	43452623	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	922328	43452623	199746750	72	58138										
THADA	0	genome.wustl.edu	37	chr2	43802047	43802047	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaagtctcccaactatacttGaattcccattcaggctgtcc	5	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	43802047	43802047	G	A	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.1157	p.S386L	0.959	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	109	0	0	107	50	31.85	-	-	-	A	43802047	G	A	43802047	3	1	677	1	0	0	0	0	1	0	0	0	15935	1294	45	2	4816	2	THADA	2	43802047	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	349424	43802047	199397326	73	58139										
PLEKHH2	0	genome.wustl.edu	37	chr2	43871929	43871929	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagatacgagagcttttagcAgagaaggtaagctttctccc	10	8	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	43871929	43871929	A	G	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	silent	c.117	p.A39	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	89	0	0	49	36	42.35	-	-	-	G	43871929	A	G	43871929	2	3	677	1	0	0	0	0	0	0	0	1	12151	175	7	5		5	PLEKHH2	2	43871929	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	69882	43871929	199327444	74	58140										
GPR75	0	genome.wustl.edu	37	chr2	54081853	54081853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtgaggcacatggagcgagGtggcattgggggcatcctga	18	7	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	54081853	54081853	G	A	SNP	GPR75	ENST00000394705	human	ensembl	69_37n	-1	known	missense	c.41	p.T14I	0.592	NULL	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR75	HGNC	ENSG00000119737	39	0	0	22	10	31.25	-	-	-	A	54081853	G	A	54081853	3	1	677	1	0	0	0	0	1	0	0	0	6758	1261	44	4	1585	4	GPR75	2	54081853	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	10209924	54081853	189117520	75	58141										
PSME4	0	genome.wustl.edu	37	chr2	54155412	54155412	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agctgtgagctggtgaggttCtgttaatgtctctaatgcag	13	6	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	54155412	54155412	C	A	SNP	PSME4	ENST00000404125	human	ensembl	69_37n	-1	known	nonsense	c.1345	p.E449*	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	98	0	0	54	22	28.95	-	-	-	A	54155412	C	A	54155412	4	1	677	1	0	0	0	0	0	1	0	0	12789	922	32	2	4330	2	PSME4	2	54155412	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	73559	54155412	189043961	76	58142										
MDH1	0	genome.wustl.edu	37	chr2	63822565	63822565	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctatttggtagcctataatTcttgtgctgttggatatcac	9	7	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	63822565	63822565	T	C	SNP	MDH1	ENST00000539945	human	ensembl	69_37n	1	known	silent	c.165	p.I55	1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_NAD-dep_euk,tigrfam_Malate_DH_type2	pfam_Lactate/malate_DH_C,pfam_Lactate/malate_DH_N,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_NAD-dep_euk,tigrfam_Malate_DH_type2	-	no_errors	MDH1	HGNC	ENSG00000014641	99	0	0	92	14	13.21	-	-	-	C	63822565	T	C	63822565	2	2	677	1	0	0	0	0	0	0	0	1	9479	1771	62	5		5	MDH1	2	63822565	Silent	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	9667153	63822565	179376808	77	58143										
VPS54	0	genome.wustl.edu	37	chr2	64160970	64160970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aactgctataggtgttagctCaccctcaccgaatgcatcac	7	13	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	64160970	64160970	C	T	SNP	VPS54	ENST00000272322	human	ensembl	69_37n	-1	known	missense	c.1576	p.E526K	1.000	NULL	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952	134	0	0	102	49	32.45	-	-	-	T	64160970	C	T	64160970	3	4	677	1	0	0	0	0	1	0	0	0	17313	835	29	2	1405	2	VPS54	2	64160970	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	338405	64160970	179038403	78	58144										
SERTAD2	0	genome.wustl.edu	37	chr2	64863616	64863616	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgagcagtgaggccggggtGaggcaggcctccaggggcgt	20	10	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	64863616	64863616	G	A	SNP	SERTAD2	ENST00000313349	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD2	HGNC	ENSG00000179833	70	0	0	39	8	17.02	-	-	-	A	64863616	G	A	64863616	2	1	677	1	0	0	0	0	0	0	0	1	14209	1277	45	2		2	SERTAD2	2	64863616	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	702646	64863616	178335757	79	58145										
C2orf42	0	genome.wustl.edu	37	chr2	70377535	70377535	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggccagttccaagggctggtCcaaggggggccgctggtctt	17	11	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	70377535	70377535	C	G	SNP	C2orf42	ENST00000264434	human	ensembl	69_37n	-1	known	missense	c.1678	p.D560H	0.988	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998	50	0	0	31	14	31.11	-	-	-	G	70377535	C	G	70377535	3	3	677	1	0	0	0	0	1	0	0	0	2186	855	30	2	50	2	C2orf42	2	70377535	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5513919	70377535	172821838	80	58146										
DGUOK	0	genome.wustl.edu	37	chr2	74177789	74177789	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tatctatcaggactggcattCttttctcctgtgggagtttg	10	8	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	74177789	74177789	C	G	SNP	DGUOK	ENST00000264093	human	ensembl	69_37n	1	known	missense	c.521	p.S174C	0.973	pfam_Deoxynucleoside_kinase	pfam_Deoxynucleoside_kinase	-	no_errors	DGUOK	HGNC	ENSG00000114956	144	0	0	149	49	24.75	-	-	-	G	74177789	C	G	74177789	3	3	677	1	0	0	0	0	1	0	0	0	4511	913	32	2	535	2	DGUOK	2	74177789	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3800254	74177789	169021584	81	58147										
DQX1	0	genome.wustl.edu	37	chr2	74752197	74752197	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgtatccaacctcatgacCcagggtcaggtccatctcat	8	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	74752197	74752197	C	A	SNP	DQX1	ENST00000393951	human	ensembl	69_37n	-1	known	missense	c.370	p.G124C	1.000	smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	52	0	0	14	9	39.13	-	-	-	A	74752197	C	A	74752197	3	1	677	1	0	0	0	0	1	0	0	0	4786	623	22	4	1823	4	DQX1	2	74752197	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	574408	74752197	168447176	82	58148										
SEMA4F	0	genome.wustl.edu	37	chr2	74906801	74906801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgttctccaagctcagcatGggcatcctgtgtgtggcacc	11	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	74906801	74906801	G	C	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.1778	p.W593S	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	97	0	0	66	34	34	-	-	-	C	74906801	G	C	74906801	3	2	677	1	0	0	0	0	1	0	0	0	14123	1357	47	4	1832	4	SEMA4F	2	74906801	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	154604	74906801	168292572	83	58149										
LRRTM4	0	genome.wustl.edu	37	chr2	77745581	77745581	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attcatttgtctttcagactCtctggcctttttccgccgcc	6	14	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	77745581	77745581	C	T	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	missense	c.1417	p.E473K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	83	0	0	58	35	37.63	-	-	-	T	77745581	C	T	77745581	3	4	677	1	0	0	0	0	1	0	0	0	9108	922	32	2	372	2	LRRTM4	2	77745581	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2838780	77745581	165453792	84	58150										
RNF103	0	genome.wustl.edu	37	chr2	86831694	86831694	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attggcattgacttcatcatTgttgttgttgcgccttctct	8	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	86831694	86831694	T	C	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	missense	c.1330	p.N444D	0.279	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	103	0	0	108	43	28.48	-	-	-	C	86831694	T	C	86831694	3	2	677	1	0	0	0	0	1	0	0	0	13509	1812	63	5	731	5	RNF103	2	86831694	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	9086113	86831694	156367679	85	58151										
ITPRIPL1	0	genome.wustl.edu	37	chr2	96993969	96993969	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggcacattcacaggcagtgGaagagttccaaaaccttctg	10	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	96993969	96993969	G	A	SNP	ITPRIPL1	ENST00000420728	human	ensembl	69_37n	1	putative	nonsense	c.1695	p.W565*	0.990	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITPRIPL1	HGNC	ENSG00000198885	15	0	0	13	9	40.91	-	-	-	A	96993969	G	A	96993969	4	1	677	1	0	0	0	0	0	1	0	0	7978	1175	41	2	1640	2	ITPRIPL1	2	96993969	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	10162275	96993969	146205404	86	58152										
ZAP70	0	genome.wustl.edu	37	chr2	98351824	98351824	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagctggacaacccctacatCgtgcggctcattggcgtctg	11	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	98351824	98351824	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	silent	c.1194	p.I398	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	61	0	0	32	10	23.81	-	-	-	T	98351824	C	T	98351824	2	4	677	1	0	0	0	0	0	0	0	1	17611	874	31	1		1	ZAP70	2	98351824	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1357855	98351824	144847549	87	58153										
EIF5B	0	genome.wustl.edu	37	chr2	100013281	100013281	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcagtacatttttaattctCgagatccgatagtgatgggg	10	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	100013281	100013281	C	G	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	missense	c.3313	p.R1105G	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	83	0	0	70	31	30.69	-	-	-	G	100013281	C	G	100013281	3	3	677	1	0	0	0	0	1	0	0	0	5081	876	31	3	3399	3	EIF5B	2	100013281	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1661457	100013281	143186092	88	58154										
ST6GAL2	0	genome.wustl.edu	37	chr2	107423287	107423287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtagtgggtggtacgccccGagggtgcaggctgcgtcgta	18	9	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	107423287	107423287	G	A	SNP	ST6GAL2	ENST00000361803	human	ensembl	69_37n	-1	known	missense	c.133	p.R45W	0.851	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ST6GAL2	HGNC	ENSG00000144057	65	0	0	42	13	23.21	-	-	-	A	107423287	G	A	107423287	3	1	677	1	0	0	0	0	1	0	0	0	15313	1045	37	1	156	1	ST6GAL2	2	107423287	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7410006	107423287	135776086	89	58155										
BUB1	0	genome.wustl.edu	37	chr2	111416320	111416320	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaccttatgtgtttcacaccCtagcaaagaaatggagacaa	7	9	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	111416320	111416320	C	A	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	splice_site	c.1277-1	e12-1	0.337	-	-	-	no_errors	BUB1	HGNC	ENSG00000169679	173	1	0.57	131	80	37.91	-	-	-	A	111416320	C	A	111416320	5	1	677	1	0	0	0	0	0	0	1	0	1579	695	24	4	2037	4	BUB1	2	111416320	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3993033	111416320	131783053	90	58156										
MAP3K2	0	genome.wustl.edu	37	chr2	128075321	128075321	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagcaactgaatttcacactCaagtgcatttacttcctgaa	5	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	128075321	128075321	C	T	SNP	MAP3K2	ENST00000344908	human	ensembl	69_37n	-1	known	missense	c.1210	p.E404K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967	74	0	0	60	40	40	-	-	-	T	128075321	C	T	128075321	3	4	677	1	0	0	0	0	1	0	0	0	9321	835	29	2	665	2	MAP3K2	2	128075321	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	16659001	128075321	115124052	91	58157										
MYO7B	0	genome.wustl.edu	37	chr2	128385990	128385990	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgctgctctccacgatgcatGaggagtacgagtttgtgtca	12	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	128385990	128385990	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.4426	p.E1476K	0.892	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	42	0	0	19	8	29.63	-	-	-	A	128385990	G	A	128385990	3	1	677	1	0	0	0	0	1	0	0	0	10155	1291	45	2	4552	2	MYO7B	2	128385990	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	310669	128385990	114813383	92	58158										
HS6ST1	0	genome.wustl.edu	37	chr2	129075905	129075905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccttcatgtcgaagcgcagcGagcgctccagctcgcggacc	12	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	129075905	129075905	G	A	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.233	p.S78L	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	32	0	0	4	4	50	-	-	-	A	129075905	G	A	129075905	3	1	677	1	0	0	0	0	1	0	0	0	7421	1059	37	1	1010	1	HS6ST1	2	129075905	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	689915	129075905	114123468	93	58159										
NCKAP5	0	genome.wustl.edu	37	chr2	133540873	133540873	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcatttaaactgtctttttCatgtttccctggcacggtgg	8	9	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	133540873	133540873	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	nonsense	c.3511	p.E1171*	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	86	0	0	66	30	30.61	-	-	-	A	133540873	C	A	133540873	4	1	677	1	0	0	0	0	0	1	0	0	10295	835	29	2	2246	2	NCKAP5	2	133540873	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4464968	133540873	109658500	94	58160										
ZRANB3	0	genome.wustl.edu	37	chr2	135957918	135957918	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tatatttttctactttacttCtttaccaaaaatcgtgtgat	3	7	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	135957918	135957918	C	A	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.3234	p.K1078N	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	197	0	0	169	68	28.69	-	-	-	A	135957918	C	A	135957918	3	1	677	1	0	0	0	0	1	0	0	0	18317	912	32	2	9	2	ZRANB3	2	135957918	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2417045	135957918	107241455	95	58161										
LRP1B	0	genome.wustl.edu	37	chr2	141116507	141116507	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggtctcgtggatggacaaaGaaatttgactgaagaaaaag	12	4	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	141116507	141116507	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.11140	p.L3714F	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	114	0	0	92	48	34.29	-	-	-	A	141116507	G	A	141116507	3	1	677	1	0	0	0	0	1	0	0	0	9021	942	33	2	2735	2	LRP1B	2	141116507	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5158589	141116507	102082866	96	58162										
GALNT13	0	genome.wustl.edu	37	chr2	155115572	155115572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggcctattttctattgacaGaaactactttgaagagatag	8	6	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	155115572	155115572	G	A	SNP	GALNT13	ENST00000409237	human	ensembl	69_37n	1	known	missense	c.896	p.R299K	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278	177	0	0	130	24	15.58	-	-	-	A	155115572	G	A	155115572	3	1	677	1	0	0	0	0	1	0	0	0	6261	942	33	2	918	2	GALNT13	2	155115572	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	13999065	155115572	88083801	97	58163										
GALNT5	0	genome.wustl.edu	37	chr2	158153015	158153015	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaaacagaattaaagaaactGatacaataaggtaagtgtgg	9	3	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	158153015	158153015	G	C	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.1987	p.D663H	0.999	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	98	0	0	91	47	34.06	-	-	-	C	158153015	G	C	158153015	3	2	677	1	0	0	0	0	1	0	0	0	6266	1290	45	2	2005	2	GALNT5	2	158153015	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3037443	158153015	85046358	98	58164										
CCDC148	0	genome.wustl.edu	37	chr2	159201816	159201816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttggataactttgaagtcaaCattgcttttctgatctagat	7	6	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	159201816	159201816	C	T	SNP	CCDC148	ENST00000283233	human	ensembl	69_37n	-1	known	missense	c.162	p.M54I	0.273	NULL	NULL	-	no_errors	CCDC148	HGNC	ENSG00000153237	217	0	0	163	86	34.54	-	-	-	T	159201816	C	T	159201816	3	4	677	1	0	0	0	0	1	0	0	0	2807	478	17	4	1713	4	CCDC148	2	159201816	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1048801	159201816	83997557	99	58165										
TBR1	0	genome.wustl.edu	37	chr2	162273201	162273201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggacggggtctctgagcttCgtcacagtttcgatggctct	13	10	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	162273201	162273201	C	T	SNP	TBR1	ENST00000389554	human	ensembl	69_37n	1	known	missense	c.280	p.R94C	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535	33	0	0	23	8	25.81	-	-	-	T	162273201	C	T	162273201	3	4	677	1	0	0	0	0	1	0	0	0	15742	884	31	1	282	1	TBR1	2	162273201	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3071385	162273201	80926172	100	58166										
TBR1	0	genome.wustl.edu	37	chr2	162274263	162274263	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaatatttttgtggatgtgAttttggcggatcccaatcac	9	7	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	162274263	162274263	A	T	SNP	TBR1	ENST00000389554	human	ensembl	69_37n	1	known	missense	c.769	p.I257F	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535	162	0	0	150	59	28.1	-	-	-	T	162274263	A	T	162274263	3	4	677	1	0	0	0	0	1	0	0	0	15742	333	12	5	775	5	TBR1	2	162274263	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1062	162274263	80925110	101	58167										
SCN3A	0	genome.wustl.edu	37	chr2	165972038	165972040	+	In_Frame_Del	DEL	AAC	AAC	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgttcaccttctcggggtagAacaacatcaactgtgcttcc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	165972038	165972040	AAC	-	DEL	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	in_frame_del	c.3441_3439	p.V1147in_frame_del	0.987:1.000:1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	144	0	0	105	46	30.07	-	-	-	-	165972040	AAC	-	165972038	7	5	677	1	0	1	0	1	0	0	0	0	14006	233	9	0	2601	0	SCN3A	2	165972038	In_Frame_Del	DEL	AAC	TCGA-D8-A1J8-01A-11D-A13L-09	3697775	165972038	77227335	102	58168										
SCN7A	0	genome.wustl.edu	37	chr2	167289026	167289026	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaaaatcttgggtgttgctCaattcagaaagggtatggtc	12	5	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	167289026	167289026	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	silent	c.2394	p.L798	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	186	0	0	186	77	29.28	-	-	-	T	167289026	C	T	167289026	2	4	677	1	0	0	0	0	0	0	0	1	14011	825	29	2		2	SCN7A	2	167289026	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1316988	167289026	75910347	103	58169										
CHRNA1	0	genome.wustl.edu	37	chr2	175619015	175619015	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgctgcagttctgttcatCaaagggaaagtgggtgacga	13	7	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	175619015	175619015	C	G	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	missense	c.547	p.D183H	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	101	0	0	66	32	32.65	-	-	-	G	175619015	C	G	175619015	3	3	677	1	0	0	0	0	1	0	0	0	3410	826	29	2	921	2	CHRNA1	2	175619015	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8329989	175619015	67580358	104	58170										
TTN	0	genome.wustl.edu	37	chr2	179396976	179396976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctttgacatgaagtcaagtTcgcttttgtattctgagaga	9	7	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179396976	179396976	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.96662	p.E32221G	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	256	0	0	209	71	25.36	-	-	-	C	179396976	T	C	179396976	3	2	677	1	0	0	0	0	1	0	0	0	16832	1783	62	5	3633	5	TTN	2	179396976	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	3777961	179396976	63802397	105	58171										
TTN	0	genome.wustl.edu	37	chr2	179428340	179428340	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccttccttatctcgtttttCaagaatgtagccctcaattt	5	11	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179428340	179428340	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.74815	p.E24939Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	35	0	0	43	19	30.65	-	-	-	G	179428340	C	G	179428340	3	3	677	1	0	0	0	0	1	0	0	0	16832	835	29	2	25608	2	TTN	2	179428340	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	31364	179428340	63771033	106	58172										
TTN	0	genome.wustl.edu	37	chr2	179435966	179435966	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agttgtcttaaacttggtttGaggaataggtgttttattca	10	3	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179435966	179435966	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.67189	p.Q22397E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	74	25	25.25	-	-	-	C	179435966	G	C	179435966	3	2	677	1	0	0	0	0	1	0	0	0	16832	1299	45	2	33234	2	TTN	2	179435966	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7626	179435966	63763407	107	58173										
TTN	0	genome.wustl.edu	37	chr2	179595841	179595841	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaaccatttggctgtaatctCcttagtccctgaaaatttaa	5	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179595841	179595841	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.13819	p.E4607Q	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	165	0	0	111	58	34.32	-	-	-	G	179595841	C	G	179595841	3	3	677	1	0	0	0	0	1	0	0	0	16832	864	30	2	87190	2	TTN	2	179595841	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	159875	179595841	63603532	108	58174										
TTN	0	genome.wustl.edu	37	chr2	179602965	179602965	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttgtcactctcataaatttCtcggccagctttaaaccact	4	13	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179602965	179602965	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.10483	p.E3495Q	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	97	0	0	67	41	37.96	-	-	-	G	179602965	C	G	179602965	3	3	677	1	0	0	0	0	1	0	0	0	16832	922	32	2	90570	2	TTN	2	179602965	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7124	179602965	63596408	109	58175										
TTN	0	genome.wustl.edu	37	chr2	179643760	179643760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggaagaacaacaggtataCgcagactagctctgccatct	9	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179643760	179643760	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.4049	p.R1350H	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	111	0	0	72	40	35.71	-	-	-	T	179643760	C	T	179643760	3	4	677	1	0	0	0	0	1	0	0	0	16832	536	19	1	107295	1	TTN	2	179643760	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	40795	179643760	63555613	110	58176										
TTN	0	genome.wustl.edu	37	chr2	179656925	179656925	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttttcagtttcttttcttatCtgcaaagaatgatttaagaa	5	5	4	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	179656925	179656925	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	splice_site	c.1537-1	e9-1	1.000	-	-	-	no_errors	TTN	HGNC	ENSG00000155657	116	0	0	92	42	31.34	-	-	-	G	179656925	C	G	179656925	5	3	677	1	0	0	0	0	0	0	1	0	16832	927	32	2	109864	2	TTN	2	179656925	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	13165	179656925	63542448	111	58177										
DNAJC10	0	genome.wustl.edu	37	chr2	183624001	183624001	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccttggtgtggaccttgccaGaattttgctccagaatttga	10	9	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	183624001	183624001	G	A	SNP	DNAJC10	ENST00000264065	human	ensembl	69_37n	1	known	silent	c.2112	p.Q704	0.960	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C,prints_Thioredoxin	pfam_Thioredoxin_domain,pfam_DnaJ_N,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_N,smart_DnaJ_N,pirsf_DnaJ_homolog_subfam-C,prints_Hsp_DnaJ,prints_Thioredoxin,pfscan_DnaJ_N	-	no_errors	DNAJC10	HGNC	ENSG00000077232	157	0	0	118	69	36.9	-	-	-	A	183624001	G	A	183624001	2	1	677	1	0	0	0	0	0	0	0	1	4664	933	33	2		2	DNAJC10	2	183624001	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3967076	183624001	59575372	112	58178										
COL5A2	0	genome.wustl.edu	37	chr2	189957098	189957098	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggtcctggagcaccaggttGaccaggaacacctggttctc	12	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	189957098	189957098	G	T	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.505	p.Q169K	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	53	0	0	29	13	30.95	-	-	-	T	189957098	G	T	189957098	3	4	677	1	0	0	0	0	1	0	0	0	3727	1299	45	2	4186	2	COL5A2	2	189957098	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6333097	189957098	53242275	113	58179										
STAT1	0	genome.wustl.edu	37	chr2	191843677	191843677	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggaaggtccccggctgctggTccttcaacagggcacgctct	13	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	191843677	191843677	T	A	SNP	STAT1	ENST00000361099	human	ensembl	69_37n	-1	known	missense	c.1778	p.D593V	1.000	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	45	0	0	17	10	37.04	-	-	-	A	191843677	T	A	191843677	3	1	677	1	0	0	0	0	1	0	0	0	15355	1667	58	5	498	5	STAT1	2	191843677	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1886579	191843677	51355696	114	58180										
DNAH7	0	genome.wustl.edu	37	chr2	196636482	196636482	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtacagtgttcatgctctGagtataagttgttgggtacc	11	6	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	196636482	196636482	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.11335	p.Q3779*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	203	0	0	178	78	30.47	-	-	-	A	196636482	G	A	196636482	4	1	677	1	0	0	0	0	0	1	0	0	4641	1299	45	2	759	2	DNAH7	2	196636482	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4792805	196636482	46562891	115	58181										
TRAK2	0	genome.wustl.edu	37	chr2	202245494	202245494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actctggctatccccagtctCttcagcctgtccactaagtt	6	15	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	202245494	202245494	C	G	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.2517	p.K839N	1.000	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	66	0	0	51	33	39.29	-	-	-	G	202245494	C	G	202245494	3	3	677	1	0	0	0	0	1	0	0	0	16546	912	32	2	231	2	TRAK2	2	202245494	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5609012	202245494	40953879	116	58182										
STRADB	0	genome.wustl.edu	37	chr2	202344866	202344866	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgagccagaatgtgattttCctgatgaaaaagactcatac	8	8	1	6			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	202344866	202344866	C	G	SNP	STRADB	ENST00000194530	human	ensembl	69_37n	1	known	missense	c.1225	p.P409A	0.959	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADB	HGNC	ENSG00000082146	88	0	0	65	32	32.99	-	-	-	G	202344866	C	G	202344866	3	3	677	1	0	0	0	0	1	0	0	0	15416	855	30	2	1267	2	STRADB	2	202344866	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	99372	202344866	40854507	117	58183										
CDK15	0	genome.wustl.edu	37	chr2	202712166	202712166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttgtttcctggggtttccaAcatccttgaacagctggaga	10	9	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	202712166	202712166	A	G	SNP	CDK15	ENST00000374598	human	ensembl	69_37n	1	known	missense	c.914	p.N305S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK15	HGNC	ENSG00000138395	147	1	0.68	174	35	16.75	-	-	-	G	202712166	A	G	202712166	3	3	677	1	0	0	0	0	1	0	0	0	3160	43	2	5	791	5	CDK15	2	202712166	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	367300	202712166	40487207	118	58184										
FZD5	0	genome.wustl.edu	37	chr2	208632887	208632887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aatgggcacgaagggctcgcGacacttgcacacgaacgggc	14	12	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	208632887	208632887	G	A	SNP	FZD5	ENST00000295417	human	ensembl	69_37n	-1	known	missense	c.577	p.R193C	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD5	HGNC	ENSG00000163251	17	0	0	16	6	27.27	-	-	-	A	208632887	G	A	208632887	3	1	677	1	0	0	0	0	1	0	0	0	6182	1058	37	1	1184	1	FZD5	2	208632887	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5920721	208632887	34566486	119	58185										
ERBB4	0	genome.wustl.edu	37	chr2	212578306	212578306	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttacacattttaatcccattTtcttctacttccatcttgga	2	11	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	212578306	212578306	T	C	SNP	ERBB4	ENST00000260943	human	ensembl	69_37n	-1	novel	missense	c.950	p.K317R	1.000	pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt,superfamily_Kinase-like_dom,smart_Furin_repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERBB4	HGNC	ENSG00000178568	124	0	0	131	41	23.84	-	-	-	C	212578306	T	C	212578306	3	2	677	1	0	0	0	0	1	0	0	0	5246	1838	64	5	3059	5	ERBB4	2	212578306	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	3945419	212578306	30621067	120	58186										
OBSL1	0	genome.wustl.edu	37	chr2	220427277	220427277	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctccaccacctcctctccatCcttggtccagcgcacctctg	5	21	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	220427277	220427277	C	G	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.2800	p.D934H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	95	0	0	37	12	24.49	-	-	-	G	220427277	C	G	220427277	3	3	677	1	0	0	0	0	1	0	0	0	10886	855	30	2	3098	2	OBSL1	2	220427277	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7848971	220427277	22772096	121	58187										
OBSL1	0	genome.wustl.edu	37	chr2	220428119	220428119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcacactcatctccagcgaCgcactgaaactcgcccccgt	8	18	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	220428119	220428119	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.2638	p.V880I	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	40	0	0	28	12	30	-	-	-	T	220428119	C	T	220428119	3	4	677	1	0	0	0	0	1	0	0	0	10886	536	19	1	3264	1	OBSL1	2	220428119	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	842	220428119	22771254	122	58188										
OBSL1	0	genome.wustl.edu	37	chr2	220433035	220433035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcaggggccgtgtgaaccGgaggcggggctctgtggaga	20	9	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	220433035	220433035	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	missense	c.1024	p.R342W	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	17	0	0	2	10	83.33	-	-	-	A	220433035	G	A	220433035	3	1	677	1	0	0	0	0	1	0	0	0	10886	1115	39	1	4898	1	OBSL1	2	220433035	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4916	220433035	22766338	123	58189										
SLC4A3	0	genome.wustl.edu	37	chr2	220505649	220505649	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcctctgaggcattgccttCtgccccggctcttccaggac	10	16	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	220505649	220505649	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	silent	c.3667	p.L1223	0.999	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	98	0	0	31	11	26.19	-	-	-	T	220505649	C	T	220505649	2	4	677	1	0	0	0	0	0	0	0	1	14744	912	32	2		2	SLC4A3	2	220505649	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	72614	220505649	22693724	124	58190										
COL4A4	0	genome.wustl.edu	37	chr2	227872982	227872982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatgttgcagtaggcaaaggGcagcgtgctaaatacgggaa	15	6	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	227872982	227872982	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.4561	p.P1521S	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	67	0	0	40	19	32.2	-	-	-	A	227872982	G	A	227872982	3	1	677	1	0	0	0	0	1	0	0	0	3723	1203	42	4	519	4	COL4A4	2	227872982	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7367333	227872982	15326391	125	58191										
PSMD1	0	genome.wustl.edu	37	chr2	232035319	232035319	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcattctgaaggataccagtGaagacattgaggagctggtg	13	6	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	232035319	232035319	G	C	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.2755	p.E919Q	1.000	pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	107	0	0	81	34	29.57	-	-	-	C	232035319	G	C	232035319	3	2	677	1	0	0	0	0	1	0	0	0	12772	1291	45	2	2849	2	PSMD1	2	232035319	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4162337	232035319	11164054	126	58192										
NCL	0	genome.wustl.edu	37	chr2	232325216	232325216	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttctgtttcttggcttcagGagctgctttctgtttggcca	10	9	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	232325216	232325216	G	C	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.871	p.P291A	0.995	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	259	0	0	192	78	28.89	-	-	-	C	232325216	G	C	232325216	3	2	677	1	0	0	0	0	1	0	0	0	10298	1174	41	2	1301	2	NCL	2	232325216	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	289897	232325216	10874157	127	58193										
GIGYF2	0	genome.wustl.edu	37	chr2	233655742	233655742	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacagaaagagcctattccaGaagagcaggagatggacttc	11	8	0	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	233655742	233655742	G	A	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	missense	c.1021	p.E341K	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	75	0	0	34	23	40.35	-	-	-	A	233655742	G	A	233655742	3	1	677	1	0	0	0	0	1	0	0	0	6430	943	33	2	1059	2	GIGYF2	2	233655742	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1330526	233655742	9543631	128	58194										
DGKD	0	genome.wustl.edu	37	chr2	234359584	234359584	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acagtgtcgaaatctccgtgTgaaaagctgatcagcaaagg	11	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	234359584	234359584	T	A	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	nonsense	c.2055	p.C685*	0.998	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	101	0	0	42	28	40	-	-	-	A	234359584	T	A	234359584	4	1	677	1	0	0	0	0	0	1	0	0	4503	1702	59	5	2145	5	DGKD	2	234359584	Nonsense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	703842	234359584	8839789	129	58195										
SH3BP4	0	genome.wustl.edu	37	chr2	235950796	235950796	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcccatggcccaagcatcctCtacccttccaccgtgtggga	9	17	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	235950796	235950796	C	G	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	silent	c.1383	p.L461	0.618	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	37	0	0	23	14	37.84	-	-	-	G	235950796	C	G	235950796	2	3	677	1	0	0	0	0	0	0	0	1	14334	900	32	2		2	SH3BP4	2	235950796	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1591212	235950796	7248577	130	58196										
RBM44	0	genome.wustl.edu	37	chr2	238725800	238725800	+	Frame_Shift_Del	DEL	T	T	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaatggatttattagagccaTttttttcagtgagtcaagat							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	238725800	238725800	T	-	DEL	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	frame_shift_del	c.241	p.S83fs	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	42	0	0	38	11	22.45	-	-	-	-	238725800	T	-	238725800	7	5	677	1	0	1	0	1	0	0	0	0	13221	1493	52	0	247	0	RBM44	2	238725800	Frame_Shift_Del	DEL	T	TCGA-D8-A1J8-01A-11D-A13L-09	2775004	238725800	4473573	131	58197										
PER2	0	genome.wustl.edu	37	chr2	239155114	239155114	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagagaaggaatatcttcctCatatggtatgcaaatattac	7	7	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	239155114	239155114	C	T	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.3670	p.E1224K	0.700	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	96	0	0	57	31	35.23	-	-	-	T	239155114	C	T	239155114	3	4	677	1	0	0	0	0	1	0	0	0	11803	835	29	2	101	2	PER2	2	239155114	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	429314	239155114	4044259	132	58198										
HDAC4	0	genome.wustl.edu	37	chr2	240056337	240056337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaagtctgtgcgccaaactCgtctggggacagaacacacg	11	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	240056337	240056337	C	T	SNP	HDAC4	ENST00000445704	human	ensembl	69_37n	-1	novel	missense	c.212	p.R71Q	0.978	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HDAC4	HGNC	ENSG00000068024	75	0	0	28	18	39.13	-	-	-	T	240056337	C	T	240056337	3	4	677	1	0	0	0	0	1	0	0	0	7060	871	31	1	2345	1	HDAC4	2	240056337	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	901223	240056337	3143036	133	58199										
CAPN10	0	genome.wustl.edu	37	chr2	241531440	241531440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggcagaaagatggaacctGaagggcgtagcaggaagcgg	17	7	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	241531440	241531440	G	A	SNP	CAPN10	ENST00000270361	human	ensembl	69_37n	1	known	missense	c.550	p.E184K	1.000	smart_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330	34	0	0	11	6	35.29	-	-	-	A	241531440	G	A	241531440	3	1	677	1	0	0	0	0	1	0	0	0	2648	1277	45	2	575	2	CAPN10	2	241531440	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1475103	241531440	1667933	134	58200										
SNED1	0	genome.wustl.edu	37	chr2	241969770	241969770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccccagtggccttccccattGccaaggaccgctgcgtggtg	12	16	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	2	241969770	241969770	G	A	SNP	SNED1	ENST00000310397	human	ensembl	69_37n	1	known	missense	c.283	p.A95T	1.000	NULL	pfam_EGF-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_Fibronectin_type3,superfamily_Complement_control_module,smart_Nidogen_extracell_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	62	0	0	43	19	30.65	-	-	-	A	241969770	G	A	241969770	3	1	677	1	0	0	0	0	1	0	0	0	14934	1319	46	4	289	4	SNED1	2	241969770	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	438330	241969770	1229603	135	58201										
TTLL3	0	genome.wustl.edu	37	chr3	9870740	9870740	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacaacatgtggtctagccaGaggttccaggcccacctgca	11	13	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	9870740	9870740	G	C	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	missense	c.1644	p.Q548H	0.998	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	59	0	0	37	16	30.19	-	-	-	C	9870740	G	C	9870740	3	2	677	1	0	0	0	0	1	0	0	0	16825	933	33	2	1249	2	TTLL3	3	9870740	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		9870740	188151690	136	58202										
SLC6A11	0	genome.wustl.edu	37	chr3	10970889	10970889	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcatatctccccatccagtTtgtgtgtgtggaaagcctgg	10	10	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	10970889	10970889	T	C	SNP	SLC6A11	ENST00000254488	human	ensembl	69_37n	1	known	missense	c.1235	p.F412S	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3,pfscan_Na/ntran_symport	-	no_errors	SLC6A11	HGNC	ENSG00000132164	222	1	0.45	137	19	12.18	-	-	-	C	10970889	T	C	10970889	3	2	677	1	0	0	0	0	1	0	0	0	14763	1855	64	5	1273	5	SLC6A11	3	10970889	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1100149	10970889	187051541	137	58203										
XPC	0	genome.wustl.edu	37	chr3	14208754	14208754	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actccagttttatcttttcaCtgcaacaaatagtgaaaaat	4	8	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	14208754	14208754	C	T	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	splice_site	c.537-1	e5-1	1.000	-	-	-	no_errors	XPC	HGNC	ENSG00000154767	115	0	0	68	17	20	-	-	-	T	14208754	C	T	14208754	5	4	677	1	0	0	0	0	0	0	1	0	17538	579	20	4	1283	4	XPC	3	14208754	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3237865	14208754	183813676	138	58204										
STT3B	0	genome.wustl.edu	37	chr3	31661216	31661216	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcatcagtgtctgagcatcaAcctacgacttgggtgtcttt	10	10	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	31661216	31661216	A	G	SNP	STT3B	ENST00000295770	human	ensembl	69_37n	1	known	silent	c.1221	p.Q407	0.997	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527	255	0	0	85	87	50.58	-	-	-	G	31661216	A	G	31661216	2	3	677	1	0	0	0	0	0	0	0	1	15425	40	2	5		5	STT3B	3	31661216	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	17452462	31661216	166361214	139	58205										
TTC21A	0	genome.wustl.edu	37	chr3	39162578	39162578	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgtatgtccatgtggccacaGaactgggctatctcttcatc	9	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	39162578	39162578	G	T	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	nonsense	c.1015	p.E339*	1.000	smart_TPR_repeat,pfscan_TPR_repeat	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	163	0	0	68	49	41.88	-	-	-	T	39162578	G	T	39162578	4	4	677	1	0	0	0	0	0	1	0	0	16784	943	33	2	1049	2	TTC21A	3	39162578	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7501362	39162578	158859852	140	58206										
ULK4	0	genome.wustl.edu	37	chr3	41795894	41795894	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacatctcacggttataaatCaaaatatatagaagaaccag	5	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	41795894	41795894	C	G	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	missense	c.2280	p.L760F	0.706	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	98	0	0	43	38	46.91	-	-	-	G	41795894	C	G	41795894	3	3	677	1	0	0	0	0	1	0	0	0	17075	825	29	2	1611	2	ULK4	3	41795894	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2633316	41795894	156226536	141	58207										
ZNF445	0	genome.wustl.edu	37	chr3	44489770	44489770	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgagagctaaggctgaagtCttttccacacacgtcctttt	8	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	44489770	44489770	C	G	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.1393	p.D465H	0.025	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	141	0	0	62	53	46.09	-	-	-	G	44489770	C	G	44489770	3	3	677	1	0	0	0	0	1	0	0	0	18014	913	32	2	1706	2	ZNF445	3	44489770	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2693876	44489770	153532660	142	58208										
ATRIP	0	genome.wustl.edu	37	chr3	48501834	48501834	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctgcgtgagctctggggtaGagaccaaccctgaggactca	13	12	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	48501834	48501834	G	C	SNP	ATRIP	ENST00000320211	human	ensembl	69_37n	1	known	missense	c.1381	p.E461Q	0.903	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053	75	0	0	31	23	42.59	-	-	-	C	48501834	G	C	48501834	3	2	677	1	0	0	0	0	1	0	0	0	1209	943	33	2	1411	2	ATRIP	3	48501834	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4012064	48501834	149520596	143	58209										
BSN	0	genome.wustl.edu	37	chr3	49692119	49692119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccaggacggcagtcgaccgcCgtgcagcccttggttatcaa	12	14	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	49692119	49692119	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	silent	c.5130	p.A1710	0.343	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	54	0	0	12	8	40	-	-	-	T	49692119	C	T	49692119	2	4	677	1	0	0	0	0	0	0	0	1	1538	639	23	1		1	BSN	3	49692119	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1190285	49692119	148330311	144	58210										
GMPPB	0	genome.wustl.edu	37	chr3	49759422	49759422	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgacccacgcggcagcgccaGcccacaatgcaggactcaag	11	16	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	49759422	49759422	G	A	SNP	GMPPB	ENST00000308375	human	ensembl	69_37n	-1	known	silent	c.927	p.G309	1.000	NULL	pfam_NTP_transferase,pfam_Hexapep_transf	-	no_errors	GMPPB	HGNC	ENSG00000173540	30	0	0	9	4	30.77	-	-	-	A	49759422	G	A	49759422	2	1	677	1	0	0	0	0	0	0	0	1	6547	958	34	4		4	GMPPB	3	49759422	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	67303	49759422	148263008	145	58211										
CACNA2D2	0	genome.wustl.edu	37	chr3	50418195	50418195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcaccagggtctccttcggaCatcgtacaggtcgatcttct	9	13	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	50418195	50418195	C	T	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.826	p.V276I	1.000	NULL	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	80	0	0	10	17	62.96	-	-	-	T	50418195	C	T	50418195	3	4	677	1	0	0	0	0	1	0	0	0	2574	478	17	4	2760	4	CACNA2D2	3	50418195	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	658773	50418195	147604235	146	58212										
GPR62	0	genome.wustl.edu	37	chr3	51989737	51989737	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gggttgatcctggcagctgtCgtggaggtgggggcactgct	19	8	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	51989737	51989737	C	T	SNP	GPR62	ENST00000322241	human	ensembl	69_37n	1	known	silent	c.69	p.V23	0.466	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR62	HGNC	ENSG00000180929	31	0	0	9	4	30.77	-	-	-	T	51989737	C	T	51989737	2	4	677	1	0	0	0	0	0	0	0	1	6753	871	31	1		1	GPR62	3	51989737	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1571542	51989737	146032693	147	58213										
NISCH	0	genome.wustl.edu	37	chr3	52512531	52512531	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtctctgctgaacaaccctCtgagcatcatccccgactac	6	16	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	52512531	52512531	C	G	SNP	NISCH	ENST00000345716	human	ensembl	69_37n	1	known	missense	c.1240	p.L414V	0.866	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322	85	0	0	16	26	61.9	-	-	-	G	52512531	C	G	52512531	3	3	677	1	0	0	0	0	1	0	0	0	10504	912	32	2	1282	2	NISCH	3	52512531	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	522794	52512531	145509899	148	58214										
ITIH3	0	genome.wustl.edu	37	chr3	52841021	52841021	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcatcgccaatgctcagatgGacttccaggtggaggtgaca	13	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	52841021	52841021	G	C	SNP	ITIH3	ENST00000449956	human	ensembl	69_37n	1	known	missense	c.2161	p.D721H	0.449	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267	37	0	0	10	12	54.55	-	-	-	C	52841021	G	C	52841021	3	2	677	1	0	0	0	0	1	0	0	0	7959	1174	41	2	2235	2	ITIH3	3	52841021	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	328490	52841021	145181409	149	58215										
PRKCD	0	genome.wustl.edu	37	chr3	53213754	53213754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgggtgtgtcggtgctggccGagcgctgcaagaagaacaat	16	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	53213754	53213754	G	A	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	missense	c.277	p.E93K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	45	0	0	14	21	60	-	-	-	A	53213754	G	A	53213754	3	1	677	1	0	0	0	0	1	0	0	0	12590	1059	37	1	283	1	PRKCD	3	53213754	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	372733	53213754	144808676	150	58216										
CACNA1D	0	genome.wustl.edu	37	chr3	53769442	53769442	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctcatcaaccaccacatctTcaccaacctcatccttgtct	2	18	6	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	53769442	53769442	T	C	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2723	p.F908S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	61	0	0	33	7	17.5	-	-	-	C	53769442	T	C	53769442	3	2	677	1	0	0	0	0	1	0	0	0	2566	1783	62	5	2913	5	CACNA1D	3	53769442	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	555688	53769442	144252988	151	58217										
ACTR8	0	genome.wustl.edu	37	chr3	53902779	53902779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagcccgctctcgtaacatGcggacaccaaagcgctgcca	10	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	53902779	53902779	G	A	SNP	ACTR8	ENST00000486794	human	ensembl	69_37n	-1	novel	missense	c.1103	p.A368V	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACTR8	HGNC	ENSG00000113812	139	0	0	57	30	34.48	-	-	-	A	53902779	G	A	53902779	3	1	677	1	0	0	0	0	1	0	0	0	217	1306	46	4	36	4	ACTR8	3	53902779	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	133337	53902779	144119651	152	58218										
DNASE1L3	0	genome.wustl.edu	37	chr3	58183604	58183604	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgtcctcttggtccccgatCagccaaacaaacctggggtc	10	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	58183604	58183604	C	T	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	silent	c.648	p.L216	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	138	0	0	35	56	61.54	-	-	-	T	58183604	C	T	58183604	2	4	677	1	0	0	0	0	0	0	0	1	4698	813	29	2		2	DNASE1L3	3	58183604	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4280825	58183604	139838826	153	58219										
MAGI1	0	genome.wustl.edu	37	chr3	65349175	65349175	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctctccgcaggaccgtcctCtgctaagcgcagaacataga	9	15	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	65349175	65349175	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3460	p.E1154K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	39	0	0	10	21	67.74	-	-	-	T	65349175	C	T	65349175	3	4	677	1	0	0	0	0	1	0	0	0	9261	922	32	2	1083	2	MAGI1	3	65349175	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7165571	65349175	132673255	154	58220										
ZNF654	0	genome.wustl.edu	37	chr3	88189622	88189625	+	Frame_Shift_Del	DEL	ACAG	ACAG	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tagaaagtatggaaaagaaaAcagacagtttagttcagaat							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	88189622	88189625	ACAG	-	DEL	ZNF654	ENST00000309495	human	ensembl	69_37n	1	known	frame_shift_del	c.1162_1165	p.D389fs	1.000:1.000:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105	26	0	0	9	5	35.71	-	-	-	-	88189625	ACAG	-	88189622	7	5	677	1	0	1	0	1	0	0	0	0	18163	43	2	0	1164	0	ZNF654	3	88189622	Frame_Shift_Del	DEL	ACAG	TCGA-D8-A1J8-01A-11D-A13L-09	22840447	88189622	109832808	155	58221										
GABRR3	0	genome.wustl.edu	37	chr3	97731335	97731335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atctatgatcaaatgtcatgCttttgtttgctgtgctagga	9	6	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	97731335	97731335	C	T	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	missense	c.383	p.S128N	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	166	0	0	90	44	32.84	-	-	-	T	97731335	C	T	97731335	3	4	677	1	0	0	0	0	1	0	0	0	6227	797	28	4	1043	4	GABRR3	3	97731335	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9541713	97731335	100291095	156	58222										
OR5H6	0	genome.wustl.edu	37	chr3	97983873	97983873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tagaaaagaagtctatcaaaGggatacgaaaagctgtctcc	9	7	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	97983873	97983873	G	T	SNP	OR5H6	ENST00000383696	human	ensembl	69_37n	1	known	missense	c.745	p.G249W	0.398	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	96	0	0	53	45	45.92	-	-	-	T	97983873	G	T	97983873	3	4	677	1	0	0	0	0	1	0	0	0	11236	1000	35	4	747	4	OR5H6	3	97983873	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	252538	97983873	100038557	157	58223										
NIT2	0	genome.wustl.edu	37	chr3	100058030	100058030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggaggcagcaacgcaaggagCcaaaatagtttctttgccgg	13	9	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	100058030	100058030	C	T	SNP	NIT2	ENST00000394140	human	ensembl	69_37n	1	known	missense	c.107	p.A36V	1.000	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021	118	0	0	61	8	11.59	-	-	-	T	100058030	C	T	100058030	3	4	677	1	0	0	0	0	1	0	0	0	10506	739	26	4	113	4	NIT2	3	100058030	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2074157	100058030	97964400	158	58224										
CD96	0	genome.wustl.edu	37	chr3	111286411	111286411	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcaaccatacgatagaaataGagataaatcagactctggaa	8	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	111286411	111286411	G	A	SNP	CD96	ENST00000283285	human	ensembl	69_37n	1	known	missense	c.460	p.E154K	0.425	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	107	0	0	33	38	53.52	-	-	-	A	111286411	G	A	111286411	3	1	677	1	0	0	0	0	1	0	0	0	3077	943	33	2	470	2	CD96	3	111286411	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11228381	111286411	86736019	159	58225										
PARP15	0	genome.wustl.edu	37	chr3	122354880	122354880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacaaacaatacacgatctcCaaagctatttgtggtattct	6	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	122354880	122354880	C	T	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.1970	p.P657L	0.989	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	104	0	0	30	40	57.14	-	-	-	T	122354880	C	T	122354880	3	4	677	1	0	0	0	0	1	0	0	0	11532	594	21	4	2085	4	PARP15	3	122354880	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	11068469	122354880	75667550	160	58226										
ALDH1L1	0	genome.wustl.edu	37	chr3	125874329	125874329	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggggctttgccctcagcgatCagcctcacggcctgcacctg	12	16	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	125874329	125874329	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	silent	c.546	p.L182	0.995	superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	60	0	0	8	13	61.9	-	-	-	T	125874329	C	T	125874329	2	4	677	1	0	0	0	0	0	0	0	1	494	813	29	2		2	ALDH1L1	3	125874329	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3519449	125874329	72148101	161	58227										
PIK3CB	0	genome.wustl.edu	37	chr3	138403593	138403593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggctctgtttaacttcacgGcattcagtttgattaaacta	7	8	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	138403593	138403593	G	A	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.2189	p.A730V	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	94	0	0	43	30	41.1	-	-	-	A	138403593	G	A	138403593	3	1	677	1	0	0	0	0	1	0	0	0	11988	1203	42	4	1053	4	PIK3CB	3	138403593	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	12529264	138403593	59618837	162	58228										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	28	39	58.21	-	-	-	A	178936091	G	A	178936091	3	1	677	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	40532498	178936091	19086339	163	58229										
YEATS2	0	genome.wustl.edu	37	chr3	183525829	183525829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttttccagattgggatcacCctgcagcccgtggcactcca	9	15	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	183525829	183525829	C	T	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	silent	c.4023	p.T1341	0.891	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	69	0	0	23	28	54.9	-	-	-	T	183525829	C	T	183525829	2	4	677	1	0	0	0	0	0	0	0	1	17569	610	22	4		4	YEATS2	3	183525829	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4589738	183525829	14496601	164	58230										
AP2M1	0	genome.wustl.edu	37	chr3	183898910	183898910	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgtgtcgggccgggtggtGatgaagagctacctgagtgg	18	7	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	183898910	183898910	G	T	SNP	AP2M1	ENST00000292807	human	ensembl	69_37n	1	known	silent	c.603	p.V201	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP2M1	HGNC	ENSG00000161203	161	0	0	29	39	57.35	-	-	-	T	183898910	G	T	183898910	2	4	677	1	0	0	0	0	0	0	0	1	743	1277	45	2		2	AP2M1	3	183898910	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	373081	183898910	14123520	165	58231										
TP63	0	genome.wustl.edu	37	chr3	189612137	189612137	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctctacagtcagtgtgggctCcagtgagacccggggtgagc	15	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	189612137	189612137	C	G	SNP	TP63	ENST00000264731	human	ensembl	69_37n	1	known	missense	c.1889	p.S630C	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	94	0	0	35	27	43.55	-	-	-	G	189612137	C	G	189612137	3	3	677	1	0	0	0	0	1	0	0	0	16488	855	30	2	2108	2	TP63	3	189612137	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5713227	189612137	8410293	166	58232										
LSG1	0	genome.wustl.edu	37	chr3	194379779	194379779	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtacatggcccaggcactCcgctgctcagcagtcagcaa	10	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	194379779	194379779	C	G	SNP	LSG1	ENST00000265245	human	ensembl	69_37n	-1	known	silent	c.666	p.R222	0.019	NULL	pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802	42	0	0	22	13	37.14	-	-	-	G	194379779	C	G	194379779	2	3	677	1	0	0	0	0	0	0	0	1	9115	842	30	2		2	LSG1	3	194379779	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4767642	194379779	3642651	167	58233										
KIAA0226	0	genome.wustl.edu	37	chr3	197427635	197427635	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccccacctccttcctggtcCcctaaggaagaggcagcaga	9	16	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	197427635	197427635	C	A	SNP	KIAA0226	ENST00000413360	human	ensembl	69_37n	-1	novel	nonsense	c.1045	p.G349*	0.459	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0226	HGNC	ENSG00000145016	49	0	0	13	21	61.76	-	-	-	A	197427635	C	A	197427635	4	1	677	1	0	0	0	0	0	1	0	0	8214	610	22	4	1913	4	KIAA0226	3	197427635	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3047856	197427635	594795	168	58234										
KIAA0226	0	genome.wustl.edu	37	chr3	197427778	197427778	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gttgccaatggccaggtactCaggcccctcactggcatcac	10	15	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	3	197427778	197427778	C	G	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.967	p.E323Q	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	31	0	0	6	19	76	-	-	-	G	197427778	C	G	197427778	3	3	677	1	0	0	0	0	1	0	0	0	8214	835	29	2	2056	2	KIAA0226	3	197427778	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	143	197427778	594652	169	58235										
HTT	0	genome.wustl.edu	37	chr4	3205874	3205874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cattctcttctgtgattatgTcgtaagtttgaaatgcctgt	8	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	3205874	3205874	T	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.5717	p.V1906A	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	118	1	0.83	54	16	22.86	-	-	-	C	3205874	T	C	3205874	3	2	677	1	0	0	0	0	1	0	0	0	7511	1681	58	5	5883	5	HTT	4	3205874	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09		3205874	187948402	170	58236										
FBXL5	0	genome.wustl.edu	37	chr4	15613942	15613942	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cattcagagaaggacatgctGaaaccaaatcctgcaggcct	9	11	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	15613942	15613942	G	C	SNP	FBXL5	ENST00000341285	human	ensembl	69_37n	-1	known	nonsense	c.1946	p.S649*	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL5	HGNC	ENSG00000118564	59	0	0	53	12	18.46	-	-	-	C	15613942	G	C	15613942	4	2	677	1	0	0	0	0	0	1	0	0	5768	1294	45	2	137	2	FBXL5	4	15613942	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	12408068	15613942	175540334	171	58237										
SLIT2	0	genome.wustl.edu	37	chr4	20521058	20521058	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caaaagtttatttgaaggacTgttttccttacagctcctgt	7	8	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	20521058	20521058	T	C	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.1112	p.L371P	0.999	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	94	0	0	78	34	30.36	-	-	-	C	20521058	T	C	20521058	3	2	677	1	0	0	0	0	1	0	0	0	14829	1580	55	5	1158	5	SLIT2	4	20521058	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	4907116	20521058	170633218	172	58238										
LGI2	0	genome.wustl.edu	37	chr4	25005603	25005603	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgcatccgtgtccctgaaccActcgtgcagtgactggtaag	11	13	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	25005603	25005603	A	G	SNP	LGI2	ENST00000382114	human	ensembl	69_37n	-1	known	missense	c.1108	p.W370R	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	71	0	0	63	8	11.11	-	-	-	G	25005603	A	G	25005603	3	3	677	1	0	0	0	0	1	0	0	0	8807	159	6	5	533	5	LGI2	4	25005603	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	4484545	25005603	166148673	173	58239										
GNPDA2	0	genome.wustl.edu	37	chr4	44724209	44724209	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agccaagtcatagttatcaaGaattacaagcctcattacgg	7	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	44724209	44724209	G	A	SNP	GNPDA2	ENST00000295448	human	ensembl	69_37n	-1	known	missense	c.16	p.L6F	1.000	tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281	81	0	0	71	23	24.47	-	-	-	A	44724209	G	A	44724209	3	1	677	1	0	0	0	0	1	0	0	0	6595	942	33	2	838	2	GNPDA2	4	44724209	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	19718606	44724209	146430067	174	58240										
CORIN	0	genome.wustl.edu	37	chr4	47605516	47605516	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggccggacgtagccagtctCactgatgtcttcactcagct	10	13	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	47605516	47605516	C	T	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.2710	p.E904K	0.996	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	100	0	0	49	36	42.35	-	-	-	T	47605516	C	T	47605516	3	4	677	1	0	0	0	0	1	0	0	0	3782	835	29	2	430	2	CORIN	4	47605516	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2881307	47605516	143548760	175	58241										
TEC	0	genome.wustl.edu	37	chr4	48152946	48152946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggaatcccttaccataaaaCcaccttctttatcctaaaat	2	12	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	48152946	48152946	C	T	SNP	TEC	ENST00000381501	human	ensembl	69_37n	-1	known	missense	c.806	p.G269D	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	TEC	HGNC	ENSG00000135605	80	0	0	29	58	66.67	-	-	-	T	48152946	C	T	48152946	3	4	677	1	0	0	0	0	1	0	0	0	15837	507	18	4	1125	4	TEC	4	48152946	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	547430	48152946	143001330	176	58242										
KDR	0	genome.wustl.edu	37	chr4	55964914	55964914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtagccagaagaacatggCaatcaccgccgtgcctacta	9	12	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	55964914	55964914	C	T	SNP	KDR	ENST00000263923	human	ensembl	69_37n	-1	known	missense	c.2323	p.A775T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC	ENSG00000128052	76	0	0	39	26	40	-	-	-	T	55964914	C	T	55964914	3	4	677	1	0	0	0	0	1	0	0	0	8192	710	25	4	1807	4	KDR	4	55964914	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7811968	55964914	135189362	177	58243										
SLC4A4	0	genome.wustl.edu	37	chr4	72400045	72400045	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctttgttggtcactatactGattttcatggaccaacaaat	7	8	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	72400045	72400045	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	silent	c.2382	p.L794	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	92	0	0	26	40	60.61	-	-	-	A	72400045	G	A	72400045	2	1	677	1	0	0	0	0	0	0	0	1	14745	1277	45	2		2	SLC4A4	4	72400045	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	16435131	72400045	118754231	178	58244										
G3BP2	0	genome.wustl.edu	37	chr4	76570700	76570700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgccatgccaccccttggagGaggtcctcttccatcacgat	9	15	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	76570700	76570700	G	T	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.1363	p.P455T	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	169	0	0	82	71	46.41	-	-	-	T	76570700	G	T	76570700	3	4	677	1	0	0	0	0	1	0	0	0	6191	1174	41	2	89	2	G3BP2	4	76570700	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4170655	76570700	114583576	179	58245										
TSPAN5	0	genome.wustl.edu	37	chr4	99403180	99403181	+	Frame_Shift_Ins	INS	-	-	T													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctgggtgaagtctatgaggINSttttgcaaatcaatgtcatc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	99403180	99403181	-	T	INS	TSPAN5	ENST00000305798	human	ensembl	69_37n	-1	known	frame_shift_ins	c.426_425	p.N142fs	1.000:1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785	168	0	0	103	38	26.95	-	-	-	T	99403181	-	T	99403180	7	5	677	1	0	1	1	0	0	0	0	0	16746	1252	44	0	400	0	TSPAN5	4	99403180	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	22832480	99403180	91751096	180	58246										
ADH5	0	genome.wustl.edu	37	chr4	100003226	100003226	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccctcaggatcagctccactCagggtataggcatcggtgtg	12	12	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	100003226	100003226	C	G	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	silent	c.156	p.L52	0.991	pfam_ADH_GroES-like,superfamily_GroES-like,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	111	0	0	39	38	49.35	-	-	-	G	100003226	C	G	100003226	2	3	677	1	0	0	0	0	0	0	0	1	311	813	29	2		2	ADH5	4	100003226	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	600046	100003226	91151050	181	58247										
DNAJB14	0	genome.wustl.edu	37	chr4	100867604	100867604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgaggtctcaccgcgggccGagggcagtgggtagagcttc	17	11	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	100867604	100867604	G	A	SNP	DNAJB14	ENST00000442697	human	ensembl	69_37n	-1	known	missense	c.125	p.S42L	0.984	NULL	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB14	HGNC	ENSG00000164031	65	0	0	29	39	57.35	-	-	-	A	100867604	G	A	100867604	3	1	677	1	0	0	0	0	1	0	0	0	4654	1059	37	1	1046	1	DNAJB14	4	100867604	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	864378	100867604	90286672	182	58248										
ANK2	0	genome.wustl.edu	37	chr4	114232536	114232536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attacctgcgatacagcttgGagggaggacgatctgacagg	14	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	114232536	114232536	G	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.2674	p.E892Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	81	0	0	41	42	50.6	-	-	-	C	114232536	G	C	114232536	3	2	677	1	0	0	0	0	1	0	0	0	621	1175	41	2	2793	2	ANK2	4	114232536	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	13364932	114232536	76921740	183	58249										
KIAA1109	0	genome.wustl.edu	37	chr4	123239410	123239410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatgttcgtaaaaaattacgGaggtccagtatgcgggtgag	14	5	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	123239410	123239410	G	A	SNP	KIAA1109	ENST00000419325	human	ensembl	69_37n	1	putative	missense	c.4651	p.E1551K	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1109	HGNC	ENSG00000138688	90	0	0	46	55	54.46	-	-	-	A	123239410	G	A	123239410	3	1	677	1	0	0	0	0	1	0	0	0	8260	1161	41	2	11021	2	KIAA1109	4	123239410	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	9006874	123239410	67914866	184	58250										
TRIM2	0	genome.wustl.edu	37	chr4	154191674	154191674	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcacactttctgcgagaggtAagcctcctttgtgcttggag	12	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	154191674	154191674	A	G	SNP	TRIM2	ENST00000502281	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIM2	HGNC	ENSG00000109654	89	0	0	39	27	40.91	-	-	-	G	154191674	A	G	154191674	1	3	677	0	1	0	0	0	0	0	0	0	16590	377	13	5		5	TRIM2	4	154191674	RNA	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	30952264	154191674	36962602	185	58251										
DDX60	0	genome.wustl.edu	37	chr4	169195233	169195233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccacaacatcaaggagctctCgctgcagggtgcagagtacc	11	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	169195233	169195233	C	T	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	missense	c.2306	p.R769Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	86	0	0	36	43	54.43	-	-	-	T	169195233	C	T	169195233	3	4	677	1	0	0	0	0	1	0	0	0	4409	898	31	1	2920	1	DDX60	4	169195233	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	15003559	169195233	21959043	186	58252										
DDX60	0	genome.wustl.edu	37	chr4	169206004	169206004	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctggacctgtcataatcatCactcaggggtttatgagaat	9	9	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	169206004	169206004	C	G	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	missense	c.1528	p.D510H	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	98	0	0	35	41	53.25	-	-	-	G	169206004	C	G	169206004	3	3	677	1	0	0	0	0	1	0	0	0	4409	826	29	2	3718	2	DDX60	4	169206004	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	10771	169206004	21948272	187	58253										
ODZ3	0	genome.wustl.edu	37	chr4	183600901	183600901	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgagacggagagagccgggcGgcaggcgagatccgtcagcc	18	11	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	4	183600901	183600901	G	T	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.1409	p.R470L	0.970	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	80	0	0	27	26	49.06	-	-	-	T	183600901	G	T	183600901	3	4	677	1	0	0	0	0	1	0	0	0	10909	1116	39	3	1435	3	ODZ3	4	183600901	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	14394897	183600901	7553375	188	58254										
CLPTM1L	0	genome.wustl.edu	37	chr5	1335215	1335215	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcgtcctgcatgtggatccaGaagcgcagccgccccagtga	13	14	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	1335215	1335215	G	C	SNP	CLPTM1L	ENST00000320895	human	ensembl	69_37n	-1	known	missense	c.753	p.F251L	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656	45	0	0	16	5	23.81	-	-	-	C	1335215	G	C	1335215	3	2	677	1	0	0	0	0	1	0	0	0	3585	933	33	2	911	2	CLPTM1L	5	1335215	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		1335215	179580045	189	58255										
TAS2R1	0	genome.wustl.edu	37	chr5	9629676	9629676	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attttgggagaaaaatttccTtaggaagtatgggaccataa	10	4	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	9629676	9629676	T	A	SNP	TAS2R1	ENST00000382492	human	ensembl	69_37n	-1	known	missense	c.469	p.R157W	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R1	HGNC	ENSG00000169777	51	0	0	35	15	30	-	-	-	A	9629676	T	A	9629676	3	1	677	1	0	0	0	0	1	0	0	0	15657	1608	56	5	434	5	TAS2R1	5	9629676	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	8294461	9629676	171285584	190	58256										
MYO10	0	genome.wustl.edu	37	chr5	16935899	16935899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gactgggagcgcacttacctCggtgaagaagttatccattg	12	9	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	16935899	16935899	C	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.19	p.E7K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	42	0	0	7	4	36.36	-	-	-	T	16935899	C	T	16935899	3	4	677	1	0	0	0	0	1	0	0	0	10134	893	31	1	6321	1	MYO10	5	16935899	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7306223	16935899	163979361	191	58257										
PRLR	0	genome.wustl.edu	37	chr5	35065595	35065595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gggcagcagccagggcgtatCctggtcagtctcagaatgga	15	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	35065595	35065595	C	T	SNP	PRLR	ENST00000382002	human	ensembl	69_37n	-1	known	missense	c.1465	p.D489N	0.046	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PRLR	HGNC	ENSG00000113494	97	0	0	53	32	37.65	-	-	-	T	35065595	C	T	35065595	3	4	677	1	0	0	0	0	1	0	0	0	12612	855	30	2	407	2	PRLR	5	35065595	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	18129696	35065595	145849665	192	58258										
DHX29	0	genome.wustl.edu	37	chr5	54579162	54579162	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccactcatttagaagcaaatCttccaatagaaaatgtggta	6	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	54579162	54579162	C	G	SNP	DHX29	ENST00000251636	human	ensembl	69_37n	-1	known	missense	c.1834	p.D612H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248	81	0	0	77	27	25.96	-	-	-	G	54579162	C	G	54579162	3	3	677	1	0	0	0	0	1	0	0	0	4539	913	32	2	2343	2	DHX29	5	54579162	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	19513567	54579162	126336098	193	58259										
ERBB2IP	0	genome.wustl.edu	37	chr5	65321315	65321315	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttccctcattaggttcgttGaagaatataacaacgcttaa	6	9	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65321315	65321315	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	silent	c.825	p.L275	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	179	0	0	153	70	31.39	-	-	-	A	65321315	G	A	65321315	2	1	677	1	0	0	0	0	0	0	0	1	5244	1281	45	2		2	ERBB2IP	5	65321315	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	10742153	65321315	115593945	194	58260										
ERBB2IP	0	genome.wustl.edu	37	chr5	65321692	65321692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaaggttaatatcagtagaaGaactggattgtagtttcaat	9	3	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65321692	65321692	G	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.907	p.E303Q	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	77	0	0	60	40	40	-	-	-	C	65321692	G	C	65321692	3	2	677	1	0	0	0	0	1	0	0	0	5244	943	33	2	945	2	ERBB2IP	5	65321692	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	377	65321692	115593568	195	58261										
ERBB2IP	0	genome.wustl.edu	37	chr5	65349777	65349777	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catagcataactaatatggaGattggagggctaaaaatcta	9	5	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65349777	65349777	G	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.2631	p.E877D	0.700	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	30	0	0	34	26	43.33	-	-	-	C	65349777	G	C	65349777	3	2	677	1	0	0	0	0	1	0	0	0	5244	933	33	2	2705	2	ERBB2IP	5	65349777	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	28085	65349777	115565483	196	58262			1	101		3	3	638	G		9.655271e-05
ERBB2IP	0	genome.wustl.edu	37	chr5	65350195	65350195	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcctagatcagagagcacaGaaaatcaaagttatgctaaa	7	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65350195	65350195	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.3049	p.E1017K	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	51	0	0	27	26	49.06	-	-	-	A	65350195	G	A	65350195	3	1	677	1	0	0	0	0	1	0	0	0	5244	943	33	2	3123	2	ERBB2IP	5	65350195	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	418	65350195	115565065	197	58263			1	101		3	3	638	G		9.655271e-05
ERBB2IP	0	genome.wustl.edu	37	chr5	65350414	65350414	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagcctctgtaaatcttggtGatccaggctctacaaggcgg	11	11	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65350414	65350414	G	T	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.3268	p.D1090Y	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	97	0	0	46	36	43.9	-	-	-	T	65350414	G	T	65350414	3	4	677	1	0	0	0	0	1	0	0	0	5244	1290	45	2	3342	2	ERBB2IP	5	65350414	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	219	65350414	115564846	198	58264			1	101		3	3	638	G		9.655271e-05
ERBB2IP	0	genome.wustl.edu	37	chr5	65371041	65371041	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gttctcctagacaaggccatGaactggcaaaacaagaggta	10	9	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	65371041	65371041	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.3946	p.E1316K	1.000	superfamily_PDZ	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	62	0	0	37	22	37.29	-	-	-	A	65371041	G	A	65371041	3	1	677	1	0	0	0	0	1	0	0	0	5244	1291	45	2	3901	2	ERBB2IP	5	65371041	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	20627	65371041	115544219	199	58265										
MAST4	0	genome.wustl.edu	37	chr5	66459594	66459594	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctgtggacgacctggaccgCgacaagctgaaggccaaggt	14	11	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	66459594	66459594	C	T	SNP	MAST4	ENST00000443808	human	ensembl	69_37n	1	novel	nonsense	c.1756	p.R586*	0.993	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAST4	HGNC	ENSG00000069020	14	0	0	11	7	38.89	-	-	-	T	66459594	C	T	66459594	4	4	677	1	0	0	0	0	0	1	0	0	9398	755	27	1	4831	1	MAST4	5	66459594	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1088553	66459594	114455666	200	58266										
UTP15	0	genome.wustl.edu	37	chr5	72865429	72865429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaactccaaagaaattttgaCatttaaagaacactctgatt	4	7	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	72865429	72865429	C	T	SNP	UTP15	ENST00000296792	human	ensembl	69_37n	1	known	missense	c.476	p.T159I	0.206	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338	141	0	0	122	48	28.24	-	-	-	T	72865429	C	T	72865429	3	4	677	1	0	0	0	0	1	0	0	0	17194	478	17	4	490	4	UTP15	5	72865429	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6405835	72865429	108049831	201	58267										
FAM169A	0	genome.wustl.edu	37	chr5	74130403	74130403	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcagaacatacagaaccactCtctccccaagagtgctcacc	5	16	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	74130403	74130403	C	G	SNP	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	missense	c.338	p.R113T	1.000	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	59	0	0	51	29	36.25	-	-	-	G	74130403	C	G	74130403	3	3	677	1	0	0	0	0	1	0	0	0	5527	913	32	2	1710	2	FAM169A	5	74130403	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1264974	74130403	106784857	202	58268										
F2RL2	0	genome.wustl.edu	37	chr5	75913971	75913971	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccaggtagcggttgatgctGatgcaggcaaggagcagaat	16	7	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	75913971	75913971	G	C	SNP	F2RL2	ENST00000296641	human	ensembl	69_37n	-1	known	missense	c.561	p.I187M	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Prot_act_rcpt_3,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2RL2	HGNC	ENSG00000164220	32	0	0	25	25	50	-	-	-	C	75913971	G	C	75913971	3	2	677	1	0	0	0	0	1	0	0	0	5382	1280	45	2	567	2	F2RL2	5	75913971	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1783568	75913971	105001289	203	58269										
CRHBP	0	genome.wustl.edu	37	chr5	76251689	76251689	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacagaccccaacctctttcGtaagtgttctcagtcaaaag	7	12	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	76251689	76251689	G	A	SNP	CRHBP	ENST00000274368	human	ensembl	69_37n	1	known	splice_site	c.544+1	e4+1	1.000	-	-	-	no_errors	CRHBP	HGNC	ENSG00000145708	48	0	0	59	25	29.76	-	-	-	A	76251689	G	A	76251689	5	1	677	1	0	0	0	0	0	0	1	0	3900	1159	40	1	559	1	CRHBP	5	76251689	Splice_Site	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	337718	76251689	104663571	204	58270										
DMGDH	0	genome.wustl.edu	37	chr5	78351683	78351683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtttgatgctatcataatGtattttcttcaagtttattc	5	5	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	78351683	78351683	G	A	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	missense	c.325	p.H109Y	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	129	0	0	149	66	30.7	-	-	-	A	78351683	G	A	78351683	3	1	677	1	0	0	0	0	1	0	0	0	4617	1377	48	4	2331	4	DMGDH	5	78351683	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2099994	78351683	102563577	205	58271										
JMY	0	genome.wustl.edu	37	chr5	78533503	78533503	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gggccaggaagcgcatccagGaggtgagtgagtgagctcct	17	9	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	78533503	78533503	G	T	SNP	JMY	ENST00000396137	human	ensembl	69_37n	1	known	nonsense	c.1030	p.E344*	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409	29	0	0	10	11	52.38	-	-	-	T	78533503	G	T	78533503	4	4	677	1	0	0	0	0	0	1	0	0	8011	1175	41	2	1032	2	JMY	5	78533503	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	181820	78533503	102381757	206	58272										
CMYA5	0	genome.wustl.edu	37	chr5	79029944	79029944	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggcacaagtcatgggagatAttttagataagctaagtgaa	11	4	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	79029944	79029944	A	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.5356	p.I1786F	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	56	0	0	46	35	43.21	-	-	-	T	79029944	A	T	79029944	3	4	677	1	0	0	0	0	1	0	0	0	3620	449	16	5	5362	5	CMYA5	5	79029944	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	496441	79029944	101885316	207	58273										
ACOT12	0	genome.wustl.edu	37	chr5	80655778	80655778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggtatcttcatgttgtaatCgaactttccttctctcagca	6	10	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	80655778	80655778	C	T	SNP	ACOT12	ENST00000307624	human	ensembl	69_37n	-1	known	missense	c.440	p.R147Q	0.991	NULL	pfam_Thioestr_supf,pfam_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT12	HGNC	ENSG00000172497	182	0	0	171	72	29.63	-	-	-	T	80655778	C	T	80655778	3	4	677	1	0	0	0	0	1	0	0	0	150	884	31	1	1271	1	ACOT12	5	80655778	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1625834	80655778	100259482	208	58274										
MEF2C	0	genome.wustl.edu	37	chr5	88026048	88026048	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caaaagcaggtcgacatcctCagactgagagcatgcggaag	12	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	88026048	88026048	C	T	SNP	MEF2C	ENST00000437473	human	ensembl	69_37n	-1	known	missense	c.814	p.E272K	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	76	0	0	40	17	29.82	-	-	-	T	88026048	C	T	88026048	3	4	677	1	0	0	0	0	1	0	0	0	9528	835	29	2	623	2	MEF2C	5	88026048	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7370270	88026048	92889212	209	58275										
ARSK	0	genome.wustl.edu	37	chr5	94927253	94927253	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcacatgttccgcttttgatGatgggaccaggaattaaagc	11	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	94927253	94927253	G	A	SNP	ARSK	ENST00000380009	human	ensembl	69_37n	1	known	missense	c.1020	p.M340I	0.079	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	142	0	0	112	48	30	-	-	-	A	94927253	G	A	94927253	3	1	677	1	0	0	0	0	1	0	0	0	1000	1290	45	2	1042	2	ARSK	5	94927253	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6901205	94927253	85988007	210	58276										
PCSK1	0	genome.wustl.edu	37	chr5	95768600	95768600	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcatagcccagctcctcggcGatggccgaggctgcttccgg	13	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	95768600	95768600	G	A	SNP	PCSK1	ENST00000311106	human	ensembl	69_37n	-1	known	silent	c.147	p.I49	0.995	superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426	80	0	0	40	26	39.39	-	-	-	A	95768600	G	A	95768600	2	1	677	1	0	0	0	0	0	0	0	1	11673	1048	37	1		1	PCSK1	5	95768600	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	841347	95768600	85146660	211	58277										
YTHDC2	0	genome.wustl.edu	37	chr5	112889355	112889355	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gagatcgcatcctgtttgatGacaagcggtttgctgacagt	12	8	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	112889355	112889355	G	A	SNP	YTHDC2	ENST00000161863	human	ensembl	69_37n	1	known	missense	c.1936	p.D646N	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188	135	0	0	149	57	27.67	-	-	-	A	112889355	G	A	112889355	3	1	677	1	0	0	0	0	1	0	0	0	17594	1290	45	2	1990	2	YTHDC2	5	112889355	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	17120755	112889355	68025905	212	58278										
CDO1	0	genome.wustl.edu	37	chr5	115146973	115146973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttagatttccctgtagcatCttcagaaagcagtgggagtt	10	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	115146973	115146973	C	G	SNP	CDO1	ENST00000250535	human	ensembl	69_37n	-1	known	missense	c.288	p.K96N	1.000	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	-	no_errors	CDO1	HGNC	ENSG00000129596	144	0	0	102	69	40.35	-	-	-	G	115146973	C	G	115146973	3	3	677	1	0	0	0	0	1	0	0	0	3198	912	32	2	326	2	CDO1	5	115146973	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2257618	115146973	65768287	213	58279										
DMXL1	0	genome.wustl.edu	37	chr5	118479553	118479553	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagaaatatgttggtgaagtCtttaacatcgtcagtcaaca	8	7	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	118479553	118479553	C	G	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	silent	c.2394	p.V798	0.966	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	104	0	0	88	42	32.31	-	-	-	G	118479553	C	G	118479553	2	3	677	1	0	0	0	0	0	0	0	1	4630	900	32	2		2	DMXL1	5	118479553	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3332580	118479553	62435707	214	58280										
RAPGEF6	0	genome.wustl.edu	37	chr5	130764664	130764664	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggctgcaaattatgcctctGaggctgagttacaatcttcg	10	9	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	130764664	130764664	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	nonsense	c.4711	p.Q1571*	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	98	0	0	51	41	44.57	-	-	-	A	130764664	G	A	130764664	4	1	677	1	0	0	0	0	0	1	0	0	13131	1299	45	2	102	2	RAPGEF6	5	130764664	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	12285111	130764664	50150596	215	58281										
RAD50	0	genome.wustl.edu	37	chr5	131924411	131924411	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcaagcagatcgccatcaaGaacatatccgagctagagat	9	10	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	131924411	131924411	G	C	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	1	known	missense	c.1084	p.E362Q	1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	51	0	0	77	28	26.67	-	-	-	C	131924411	G	C	131924411	3	2	677	1	0	0	0	0	1	0	0	0	13067	943	33	2	1114	2	RAD50	5	131924411	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1159747	131924411	48990849	216	58282										
WNT8A	0	genome.wustl.edu	37	chr5	137426381	137426381	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaatggataagcggcagctGagagctgggaacagcgccga	16	8	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	137426381	137426381	G	A	SNP	WNT8A	ENST00000361560	human	ensembl	69_37n	1	known	silent	c.675	p.L225	0.055	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492	45	0	0	24	6	20	-	-	-	A	137426381	G	A	137426381	2	1	677	1	0	0	0	0	0	0	0	1	17493	1277	45	2		2	WNT8A	5	137426381	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5501970	137426381	43488879	217	58283										
PSD2	0	genome.wustl.edu	37	chr5	139193060	139193060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcgtcagcttcgaggcccccCtcacacccctcatccagcag	8	20	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	139193060	139193060	C	A	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	missense	c.538	p.L180I	1.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	39	0	0	8	4	33.33	-	-	-	A	139193060	C	A	139193060	3	1	677	1	0	0	0	0	1	0	0	0	12727	681	24	4	544	4	PSD2	5	139193060	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1766679	139193060	41722200	218	58284										
ANKHD1	0	genome.wustl.edu	37	chr5	139781841	139781841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtggtgcctctggcagtgacGaggacgaagtgtccgaggta	17	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	139781841	139781841	G	A	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.289	p.E97K	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	21	0	0	2	4	66.67	-	-	-	A	139781841	G	A	139781841	3	1	677	1	0	0	0	0	1	0	0	0	628	1059	37	1	291	1	ANKHD1	5	139781841	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	588781	139781841	41133419	219	58285										
ANKHD1	0	genome.wustl.edu	37	chr5	139876234	139876234	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgaatgaactgggacaaaGaattagtgctattgaaaaag	11	4	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	139876234	139876234	G	C	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.2375	p.R792T	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	54	0	0	32	17	34.69	-	-	-	C	139876234	G	C	139876234	3	2	677	1	0	0	0	0	1	0	0	0	628	942	33	2	2539	2	ANKHD1	5	139876234	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	94393	139876234	41039026	220	58286										
PCDHAC1	0	genome.wustl.edu	37	chr5	140306817	140306817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcacaagattcggattcacGtcctggacaccaatgacaac	8	12	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	140306817	140306817	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.340	p.V114I	0.148	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	34	0	0	35	10	22.22	-	-	-	A	140306817	G	A	140306817	3	1	677	1	0	0	0	0	1	0	0	0	11605	1145	40	1	342	1	PCDHAC1	5	140306817	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	430583	140306817	40608443	221	58287										
PCDHB7	0	genome.wustl.edu	37	chr5	140554310	140554310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtaccgccaggctgctgagcGagcgcgacgcagccaagcag	15	14	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	140554310	140554310	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1894	p.E632K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	27	0	0	12	11	47.83	-	-	-	A	140554310	G	A	140554310	3	1	677	1	0	0	0	0	1	0	0	0	11620	1059	37	1	1896	1	PCDHB7	5	140554310	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	247493	140554310	40360950	222	58288										
PCDHGA4	0	genome.wustl.edu	37	chr5	140736993	140736993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctgcctcgcactttgtgggCgtggacggggttcgggcttt	16	11	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	140736993	140736993	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	silent	c.2226	p.G742	0.723	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	97	0	0	49	31	38.75	-	-	-	T	140736993	C	T	140736993	2	4	677	1	0	0	0	0	0	0	0	1	11629	755	27	1		1	PCDHGA4	5	140736993	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	182683	140736993	40178267	223	58289										
TCERG1	0	genome.wustl.edu	37	chr5	145886756	145886756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcactttaggcaacttctgGatgaaacttctgcagtaaga	9	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	145886756	145886756	G	T	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	missense	c.2896	p.D966Y	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	62	0	0	52	23	30.67	-	-	-	T	145886756	G	T	145886756	3	4	677	1	0	0	0	0	1	0	0	0	15780	1174	41	2	2970	2	TCERG1	5	145886756	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5149763	145886756	35028504	224	58290										
ABLIM3	0	genome.wustl.edu	37	chr5	148610219	148610219	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgaccccttaggttccgaGgtttggcaccccatctgcaa	9	14	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	148610219	148610219	G	T	SNP	ABLIM3	ENST00000309868	human	ensembl	69_37n	1	known	missense	c.765	p.E255D	1.000	pfam_Znf_LIM,smart_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210	127	0	0	114	53	31.74	-	-	-	T	148610219	G	T	148610219	3	4	677	1	0	0	0	0	1	0	0	0	96	991	35	4	795	4	ABLIM3	5	148610219	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2723463	148610219	32305041	225	58291										
SYNPO	0	genome.wustl.edu	37	chr5	150028481	150028481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatgtctgggcgagcagctgCcaccacgcccaccaaggtct	12	15	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	150028481	150028481	C	T	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	missense	c.1376	p.A459V	0.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	62	0	0	38	11	22.45	-	-	-	T	150028481	C	T	150028481	3	4	677	1	0	0	0	0	1	0	0	0	15548	739	26	4	1382	4	SYNPO	5	150028481	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1418262	150028481	30886779	226	58292										
GM2A	0	genome.wustl.edu	37	chr5	150646902	150646902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aattcgttgtgcctgacctgGagctgcccagttggctcacc	11	13	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	150646902	150646902	G	A	SNP	GM2A	ENST00000357164	human	ensembl	69_37n	1	known	missense	c.472	p.E158K	1.000	smart_MD-2_lipid-recog	smart_MD-2_lipid-recog	-	no_errors	GM2A	HGNC	ENSG00000196743	73	0	0	61	26	29.89	-	-	-	A	150646902	G	A	150646902	3	1	677	1	0	0	0	0	1	0	0	0	6536	1175	41	2	486	2	GM2A	5	150646902	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	618421	150646902	30268358	227	58293										
ITK	0	genome.wustl.edu	37	chr5	156641279	156641279	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggaagtggaggtgctgttctCagctggagaagcttgcaaca	15	7	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	156641279	156641279	C	T	SNP	ITK	ENST00000422843	human	ensembl	69_37n	1	known	nonsense	c.403	p.Q135*	1.000	pfam_Znf_Btk_motif,smart_Znf_Btk_motif,pfscan_Znf_Btk_motif	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	102	0	0	78	33	29.73	-	-	-	T	156641279	C	T	156641279	4	4	677	1	0	0	0	0	0	1	0	0	7963	827	29	2	417	2	ITK	5	156641279	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5994377	156641279	24273981	228	58294										
ADAM19	0	genome.wustl.edu	37	chr5	156921772	156921772	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctcctgccacattcaccttCtcgaagcagaggtcaggggc	10	14	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	156921772	156921772	C	T	SNP	ADAM19	ENST00000517374	human	ensembl	69_37n	-1	putative	missense	c.338	p.R113K	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,prints_Blood-coag_inhib_Disintegrin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAM19	HGNC	ENSG00000135074	137	0	0	113	55	32.74	-	-	-	T	156921772	C	T	156921772	3	4	677	1	0	0	0	0	1	0	0	0	240	912	32	2	1166	2	ADAM19	5	156921772	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	280493	156921772	23993488	229	58295										
SOX30	0	genome.wustl.edu	37	chr5	157053418	157053418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cattgacttgctggatgctaGaaggagttgatgtcggggct	15	6	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	157053418	157053418	G	C	SNP	SOX30	ENST00000265007	human	ensembl	69_37n	-1	known	missense	c.2192	p.S731C	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX30	HGNC	ENSG00000039600	108	0	0	87	42	32.56	-	-	-	C	157053418	G	C	157053418	3	2	677	1	0	0	0	0	1	0	0	0	15041	942	33	2	73	2	SOX30	5	157053418	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	131646	157053418	23861842	230	58296										
SOX30	0	genome.wustl.edu	37	chr5	157065288	157065288	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtaagggtgatgaaaagaGaatcttggtggtgtcccgaa	14	4	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	157065288	157065288	G	C	SNP	SOX30	ENST00000265007	human	ensembl	69_37n	-1	known	missense	c.1830	p.F610L	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX30	HGNC	ENSG00000039600	76	0	0	30	13	30.23	-	-	-	C	157065288	G	C	157065288	3	2	677	1	0	0	0	0	1	0	0	0	15041	933	33	2	439	2	SOX30	5	157065288	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11870	157065288	23849972	231	58297										
WWC1	0	genome.wustl.edu	37	chr5	167851016	167851016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aactgagccttggtaacagcGcccaggaaagataccggctg	12	11	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	167851016	167851016	G	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.1753	p.A585T	0.000	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	30	0	0	26	6	18.75	-	-	-	A	167851016	G	A	167851016	3	1	677	1	0	0	0	0	1	0	0	0	17508	1087	38	1	1795	1	WWC1	5	167851016	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	10785728	167851016	13064244	232	58298										
RUFY1	0	genome.wustl.edu	37	chr5	179004109	179004109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttttccctctaccttaagGatgtgcaggatcttgatggt	9	8	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	5	179004109	179004109	G	T	SNP	RUFY1	ENST00000319449	human	ensembl	69_37n	1	known	missense	c.862	p.D288Y	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783	267	0	0	189	108	36.36	-	-	-	T	179004109	G	T	179004109	3	4	677	1	0	0	0	0	1	0	0	0	13824	1174	41	2	884	2	RUFY1	5	179004109	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11153093	179004109	1911151	233	58299										
PRPF4B	0	genome.wustl.edu	37	chr6	4037711	4037713	+	In_Frame_Del	DEL	GAA	GAA	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caatagatggtctccaacccGaagaagaagtagatctccca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	4037711	4037713	GAA	-	DEL	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	in_frame_del	c.1319_1321	p.R442in_frame_del	1.000:0.998:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	73	0	0	35	37	50	-	-	-	-	4037713	GAA	-	4037711	7	5	677	1	0	1	0	1	0	0	0	0	12654	1058	37	0	1329	0	PRPF4B	6	4037711	In_Frame_Del	DEL	GAA	TCGA-D8-A1J8-01A-11D-A13L-09		4037711	167077356	234	58300										
TXNDC5	0	genome.wustl.edu	37	chr6	7883486	7883486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcggaaaagcaataacgtgGggtagcctcgtaccttaaaa	10	9	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	7883486	7883486	G	A	SNP	TXNDC5	ENST00000379757	human	ensembl	69_37n	-1	known	missense	c.1190	p.P397L	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264	66	0	0	58	21	26.58	-	-	-	A	7883486	G	A	7883486	3	1	677	1	0	0	0	0	1	0	0	0	16896	1232	43	4	112	4	TXNDC5	6	7883486	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3845775	7883486	163231581	235	58301										
HIVEP1	0	genome.wustl.edu	37	chr6	12161698	12161698	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacagagattcagttatgagCgatctggatatgatcttgaa	10	5	3	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	12161698	12161698	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	nonsense	c.6514	p.R2172*	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	29	0	0	32	14	30.43	-	-	-	T	12161698	C	T	12161698	4	4	677	1	0	0	0	0	0	1	0	0	7237	760	27	1	6540	1	HIVEP1	6	12161698	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4278212	12161698	158953369	236	58302										
PHACTR1	0	genome.wustl.edu	37	chr6	13286408	13286408	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaaggagctcaatgaattcAaaagcactgagatggaagtt	11	5	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	13286408	13286408	A	G	SNP	PHACTR1	ENST00000379335	human	ensembl	69_37n	1	known	missense	c.373	p.K125E	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	105	0	0	116	19	14.07	-	-	-	G	13286408	A	G	13286408	3	3	677	1	0	0	0	0	1	0	0	0	11883	131	5	5	1727	5	PHACTR1	6	13286408	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1124710	13286408	157828659	237	58303										
HIST1H3B	0	genome.wustl.edu	37	chr6	26031967	26031967	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atggatggcgcaaaggtttgTgtcctcaaagagccctacca	11	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	26031967	26031967	T	C	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.322	p.T108A	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	80	0	0	48	14	22.22	-	-	-	C	26031967	T	C	26031967	3	2	677	1	0	0	0	0	1	0	0	0	7207	1696	59	5	92	5	HIST1H3B	6	26031967	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	12745559	26031967	145083100	238	58304										
ZNF165	0	genome.wustl.edu	37	chr6	28056587	28056587	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacccacaaaaatacagtcaGaggtgaaataataagccacg	7	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	28056587	28056587	G	A	SNP	ZNF165	ENST00000377325	human	ensembl	69_37n	1	known	missense	c.797	p.R266K	0.775	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279	49	0	0	20	30	60	-	-	-	A	28056587	G	A	28056587	3	1	677	1	0	0	0	0	1	0	0	0	17836	942	33	2	807	2	ZNF165	6	28056587	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2024620	28056587	143058480	239	58305										
HLA-A	0	genome.wustl.edu	37	chr6	29911954	29911954	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctgaccatgaggccaccctGaggtgctgggccctgggctt	14	13	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	29911954	29911954	G	T	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	silent	c.675	p.L225	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	44	0	0	10	21	67.74	-	-	-	T	29911954	G	T	29911954	2	4	677	1	0	0	0	0	0	0	0	1	7246	1277	45	2		2	HLA-A	6	29911954	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1855367	29911954	141203113	240	58306										
SKIV2L	0	genome.wustl.edu	37	chr6	31930342	31930342	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccggaggcctcctgcctcatCatgaccacagagatccttcg	9	16	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	31930342	31930342	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	1	known	silent	c.1191	p.I397	0.999	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	51	0	0	8	29	78.38	-	-	-	T	31930342	C	T	31930342	2	4	677	1	0	0	0	0	0	0	0	1	14448	816	29	2		2	SKIV2L	6	31930342	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2018388	31930342	139184725	241	58307										
ZNF76	0	genome.wustl.edu	37	chr6	35262361	35262361	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgcaggtgagtagagatctGggaggaaaggggatcccacg	18	6	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	35262361	35262361	G	C	SNP	ZNF76	ENST00000498555	human	ensembl	69_37n	1	putative	missense	c.221	p.W74S	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF76	HGNC	ENSG00000065029	86	0	0	19	49	72.06	-	-	-	C	35262361	G	C	35262361	3	2	677	1	0	0	0	0	1	0	0	0	18229	1363	47	4		4	ZNF76	6	35262361	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3332019	35262361	135852706	242	58308										
MDGA1	0	genome.wustl.edu	37	chr6	37611585	37611585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacctggccccccaactcacCgatgtgtttcccgtacatgt	7	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	37611585	37611585	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.2548	p.G850S	0.991	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	84	0	0	17	41	70.69	-	-	-	T	37611585	C	T	37611585	3	4	677	1	0	0	0	0	1	0	0	0	9477	666	23	1	347	1	MDGA1	6	37611585	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2349224	37611585	133503482	243	58309										
MOCS1	0	genome.wustl.edu	37	chr6	39874156	39874156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcccgatggaagtccccccGctgaccaccagtcttgctaa	9	16	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	39874156	39874156	G	A	SNP	MOCS1	ENST00000340692	human	ensembl	69_37n	-1	known	missense	c.1888	p.R630W	1.000	superfamily_Mopterin_CF_biosynth-C_dom	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615	38	0	0	36	8	18.18	-	-	-	A	39874156	G	A	39874156	3	1	677	1	0	0	0	0	1	0	0	0	9762	1102	38	1		1	MOCS1	6	39874156	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2262571	39874156	131240911	244	58310										
TFEB	0	genome.wustl.edu	37	chr6	41652769	41652769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcagccatgttcatgccggaCggggaggtggtagggaggcc	18	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	41652769	41652769	C	T	SNP	TFEB	ENST00000230323	human	ensembl	69_37n	-1	known	silent	c.999	p.P333	0.152	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFEB	HGNC	ENSG00000112561	40	0	0	7	10	55.56	-	-	-	T	41652769	C	T	41652769	2	4	677	1	0	0	0	0	0	0	0	1	15896	523	19	1		1	TFEB	6	41652769	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1778613	41652769	129462298	245	58311										
PTK7	0	genome.wustl.edu	37	chr6	43109509	43109509	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacacttgcattgcctccaaCgggccgcagggccagattcg	11	14	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	43109509	43109509	C	T	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	silent	c.1722	p.N574	0.760	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	65	0	0	31	8	20.51	-	-	-	T	43109509	C	T	43109509	2	4	677	1	0	0	0	0	0	0	0	1	12846	535	19	1		1	PTK7	6	43109509	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1456740	43109509	128005558	246	58312										
ZNF318	0	genome.wustl.edu	37	chr6	43306449	43306449	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcctcagatttacggagctCttggctttccttatcctggt	8	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	43306449	43306449	C	G	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	missense	c.5287	p.E1763Q	0.949	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	127	1	0.78	48	117	70.91	-	-	-	G	43306449	C	G	43306449	3	3	677	1	0	0	0	0	1	0	0	0	17932	922	32	2	1556	2	ZNF318	6	43306449	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	196940	43306449	127808618	247	58313										
EFHC1	0	genome.wustl.edu	37	chr6	52317651	52317651	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacaggtaagtgacataggaAccacaataggcttacttatt	8	7	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	52317651	52317651	A	G	SNP	EFHC1	ENST00000480623	human	ensembl	69_37n	1	known	missense	c.739	p.T247A	0.001	NULL	pfam_DUF1126,smart_Uncharacterised_DM10	-	no_errors	EFHC1	HGNC	ENSG00000096093	106	0	0	87	28	24.35	-	-	-	G	52317651	A	G	52317651	3	3	677	1	0	0	0	0	1	0	0	0	4981	58	2	5		5	EFHC1	6	52317651	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	9011202	52317651	118797416	248	58314										
ICK	0	genome.wustl.edu	37	chr6	52883203	52883203	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctccagggaagagtggcctGagggtgtaaacttctgccat	14	9	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	52883203	52883203	G	C	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	silent	c.588	p.L196	0.892	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	82	0	0	22	65	74.71	-	-	-	C	52883203	G	C	52883203	2	2	677	1	0	0	0	0	0	0	0	1	7538	1277	45	2		2	ICK	6	52883203	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	565552	52883203	118231864	249	58315										
PHIP	0	genome.wustl.edu	37	chr6	79725353	79725353	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaattttttctcaccatcagGacatgaattagttgaccagt	7	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	79725353	79725353	G	C	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	silent	c.1383	p.V461	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	122	1	0.81	51	119	70	-	-	-	C	79725353	G	C	79725353	2	2	677	1	0	0	0	0	0	0	0	1	11916	1161	41	2		2	PHIP	6	79725353	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	26842150	79725353	91389714	250	58316										
USP45	0	genome.wustl.edu	37	chr6	99956518	99956518	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttgaggcacaaccaaatatCagaagtaagtactagctgcc	8	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	99956518	99956518	C	G	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.241	p.D81H	1.000	pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	127	0	0	38	86	69.35	-	-	-	G	99956518	C	G	99956518	3	3	677	1	0	0	0	0	1	0	0	0	17173	826	29	2	2267	2	USP45	6	99956518	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	20231165	99956518	71158549	251	58317										
AKD1	0	genome.wustl.edu	37	chr6	109814642	109814642	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tatgatcaaagtcaatggctCtgaactgaggttccttgtat	9	7	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	109814642	109814642	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.5666	p.R1889K	0.995	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	143	0	0	46	98	68.06	-	-	-	T	109814642	C	T	109814642	3	4	677	1	0	0	0	0	1	0	0	0	460	913	32	2	73	2	AKD1	6	109814642	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9858124	109814642	61300425	252	58318										
AKD1	0	genome.wustl.edu	37	chr6	109819084	109819084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actcttcagctctgacagtgTcagtcttttggggatcatgt	10	9	6	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	109819084	109819084	T	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.5131	p.T1711P	1.000	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	99	1	1	34	63	64.95	-	-	-	G	109819084	T	G	109819084	3	3	677	1	0	0	0	0	1	0	0	0	460	1667	58	5	624	5	AKD1	6	109819084	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	4442	109819084	61295983	253	58319										
MAN1A1	0	genome.wustl.edu	37	chr6	119510960	119510960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccgcgaagcaggtcaggtggCccatcttgtgctccaggagg	15	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	119510960	119510960	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	missense	c.1415	p.G472D	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	50	0	0	60	14	18.92	-	-	-	T	119510960	C	T	119510960	3	4	677	1	0	0	0	0	1	0	0	0	9281	739	26	4	562	4	MAN1A1	6	119510960	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9691876	119510960	51604107	254	58320										
HEY2	0	genome.wustl.edu	37	chr6	126080335	126080335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agagtgcctaacagaagttgCgcggtacctgagctccgtgg	14	10	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	126080335	126080335	C	T	SNP	HEY2	ENST00000368364	human	ensembl	69_37n	1	known	missense	c.401	p.A134V	1.000	pfam_Orange,smart_Orange_subgr,pfscan_Orange	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd,prints_Antifreeze_1	-	no_errors	HEY2	HGNC	ENSG00000135547	96	0	0	79	10	11.24	-	-	-	T	126080335	C	T	126080335	3	4	677	1	0	0	0	0	1	0	0	0	7130	768	27	1	419	1	HEY2	6	126080335	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6569375	126080335	45034732	255	58321										
TRMT11	0	genome.wustl.edu	37	chr6	126319391	126319391	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccatttctacattcggactCtacatataaaataaagattc	3	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	126319391	126319391	C	T	SNP	TRMT11	ENST00000334379	human	ensembl	69_37n	1	known	missense	c.317	p.S106F	1.000	pirsf_tRNA_mtfrase_TRM11	pfam_RNA_methylase_dom,pirsf_tRNA_mtfrase_TRM11,prints_N12N6_MeTrfase	-	no_errors	TRMT11	HGNC	ENSG00000066651	93	0	0	36	71	66.36	-	-	-	T	126319391	C	T	126319391	3	4	677	1	0	0	0	0	1	0	0	0	16658	913	32	2	335	2	TRMT11	6	126319391	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	239056	126319391	44795676	256	58322										
EPB41L2	0	genome.wustl.edu	37	chr6	131222189	131222189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attcactgaggtcgatgctgCcatgttcttctgggtcatag	11	9	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	131222189	131222189	C	T	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.1061	p.G354D	0.971	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	121	0	0	38	86	69.35	-	-	-	T	131222189	C	T	131222189	3	4	677	1	0	0	0	0	1	0	0	0	5190	739	26	4	2008	4	EPB41L2	6	131222189	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4902798	131222189	39892878	257	58323										
CTAGE9	0	genome.wustl.edu	37	chr6	132031204	132031204	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttaacttagcagcatgaatCagtttcttcaaagctccttt	5	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	132031204	132031204	C	T	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	silent	c.954	p.L318	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	122	0	0	65	143	68.75	-	-	-	T	132031204	C	T	132031204	2	4	677	1	0	0	0	0	0	0	0	1	4028	813	29	2		2	CTAGE9	6	132031204	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	809015	132031204	39083863	258	58324										
AHI1	0	genome.wustl.edu	37	chr6	135778809	135778809	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggctatctcggcttgttattTcatgaacaccatcaccatca	6	12	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	135778809	135778809	T	C	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.974	p.E325G	1.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	98	0	0	133	24	15.29	-	-	-	C	135778809	T	C	135778809	3	2	677	1	0	0	0	0	1	0	0	0	413	1783	62	5	2757	5	AHI1	6	135778809	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	3747605	135778809	35336258	259	58325										
MAP7	0	genome.wustl.edu	37	chr6	136687005	136687005	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttctcaggatctttcttctCaggctccactttgacttccc	5	15	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	136687005	136687005	C	G	SNP	MAP7	ENST00000454590	human	ensembl	69_37n	-1	known	missense	c.1207	p.E403Q	0.993	NULL	pfam_E-MAP-115	-	no_errors	MAP7	HGNC	ENSG00000135525	70	0	0	31	64	67.37	-	-	-	G	136687005	C	G	136687005	3	3	677	1	0	0	0	0	1	0	0	0	9337	835	29	2	1144	2	MAP7	6	136687005	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	908196	136687005	34428062	260	58326										
NUP43	0	genome.wustl.edu	37	chr6	150052790	150052790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttcaggtacatctgtggaaGcatcccagtgccagagggat	12	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	150052790	150052790	G	A	SNP	NUP43	ENST00000340413	human	ensembl	69_37n	-1	known	missense	c.872	p.A291V	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253	101	0	0	86	29	25.22	-	-	-	A	150052790	G	A	150052790	3	1	677	1	0	0	0	0	1	0	0	0	10838	971	34	4	278	4	NUP43	6	150052790	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	13365785	150052790	21062277	261	58327										
ESR1	0	genome.wustl.edu	37	chr6	152265369	152265369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagcgccagagagatgatggGgagggcaggggtgaagtggg	22	4	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	152265369	152265369	G	A	SNP	ESR1	ENST00000427531	human	ensembl	69_37n	1	putative	missense	c.536	p.G179E	0.998	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Oestr_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ESR1	HGNC	ENSG00000091831	76	0	0	13	36	73.47	-	-	-	A	152265369	G	A	152265369	3	1	677	1	0	0	0	0	1	0	0	0	5293	1219	43	4	836	4	ESR1	6	152265369	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2212579	152265369	18849698	262	58328										
SMOC2	0	genome.wustl.edu	37	chr6	168949861	168949861	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaacaggttaaaagtcggcaGaacaaaaccaataagaattc	8	7	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	6	168949861	168949861	G	T	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.648	p.Q216H	1.000	superfamily_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	99	0	0	85	33	27.97	-	-	-	T	168949861	G	T	168949861	3	4	677	1	0	0	0	0	1	0	0	0	14891	933	33	2	674	2	SMOC2	6	168949861	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	16684492	168949861	2165206	263	58329										
UNCX	0	genome.wustl.edu	37	chr7	1275500	1275500	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaccgccgggccaagtggagGaagaaggagaacacgaaaaa	14	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	1275500	1275500	G	A	SNP	UNCX	ENST00000316333	human	ensembl	69_37n	1	known	silent	c.483	p.R161	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	UNCX	HGNC	ENSG00000164853	20	0	0	21	7	25	-	-	-	A	1275500	G	A	1275500	2	1	677	1	0	0	0	0	0	0	0	1	17095	1165	41	2		2	UNCX	7	1275500	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		1275500	157863163	264	58330										
ZNF12	0	genome.wustl.edu	37	chr7	6730725	6730725	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtatagtgagataggacatCtgagagaagcacttcccaca	10	8	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	6730725	6730725	C	G	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	missense	c.1848	p.Q616H	0.575	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	114	0	0	134	75	35.89	-	-	-	G	6730725	C	G	6730725	3	3	677	1	0	0	0	0	1	0	0	0	17814	912	32	2	249	2	ZNF12	7	6730725	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5455225	6730725	152407938	265	58331										
THSD7A	0	genome.wustl.edu	37	chr7	11464450	11464450	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actgtggcatgggacaacctCatacacctgaaacacacatg	8	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	11464450	11464450	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.3256	p.E1086K	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	113	0	0	88	43	32.82	-	-	-	T	11464450	C	T	11464450	3	4	677	1	0	0	0	0	1	0	0	0	15974	835	29	2	1769	2	THSD7A	7	11464450	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4733725	11464450	147674213	266	58332										
TWIST1	0	genome.wustl.edu	37	chr7	19156620	19156620	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacgttggccatgacccgctGcgtctgcagctcctcgtaag	11	15	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	19156620	19156620	G	A	SNP	TWIST1	ENST00000242261	human	ensembl	69_37n	-1	known	nonsense	c.325	p.Q109*	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TWIST1	HGNC	ENSG00000122691	32	0	0	26	8	23.53	-	-	-	A	19156620	G	A	19156620	4	1	677	1	0	0	0	0	0	1	0	0	16880	1328	46	4	287	4	TWIST1	7	19156620	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7692170	19156620	139982043	267	58333										
DNAH11	0	genome.wustl.edu	37	chr7	21847542	21847542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccattaagtcctttgaagctCaagagaagacactctgtgga	9	9	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	21847542	21847542	C	G	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.10228	p.Q3410E	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	83	0	0	62	40	39.22	-	-	-	G	21847542	C	G	21847542	3	3	677	1	0	0	0	0	1	0	0	0	4635	827	29	2	10479	2	DNAH11	7	21847542	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2690922	21847542	137291121	268	58334										
NPVF	0	genome.wustl.edu	37	chr7	25266492	25266492	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgctccagcacttctttcttCttgaacgttcctcccaaatc	4	15	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	25266492	25266492	C	G	SNP	NPVF	ENST00000222674	human	ensembl	69_37n	-1	known	missense	c.292	p.E98Q	0.980	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	197	0	0	148	81	35.22	-	-	-	G	25266492	C	G	25266492	3	3	677	1	0	0	0	0	1	0	0	0	10678	922	32	2	306	2	NPVF	7	25266492	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3418950	25266492	133872171	269	58335										
HOXA9	0	genome.wustl.edu	37	chr7	27203249	27203249	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcttttgctcggtctttgttGattttcttcattttcatcct	5	9	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	27203249	27203249	G	A	SNP	HOXA9	ENST00000343483	human	ensembl	69_37n	-1	known	silent	c.792	p.I264	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399	262	0	0	160	81	33.61	-	-	-	A	27203249	G	A	27203249	2	1	677	1	0	0	0	0	0	0	0	1	7349	1280	45	2		2	HOXA9	7	27203249	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1936757	27203249	131935414	270	58336										
AVL9	0	genome.wustl.edu	37	chr7	32588492	32588492	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcaagcagatatcaccagaGagactgttcagaaaagtgtc	11	8	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	32588492	32588492	G	A	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	missense	c.334	p.E112K	1.000	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	69	0	0	41	19	31.67	-	-	-	A	32588492	G	A	32588492	3	1	677	1	0	0	0	0	1	0	0	0	1232	943	33	2	348	2	AVL9	7	32588492	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5385243	32588492	126550171	271	58337										
KBTBD2	0	genome.wustl.edu	37	chr7	32908995	32908995	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaccatttctccatccagttCaaactcttctgtcccatccg	3	16	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	32908995	32908995	C	G	SNP	KBTBD2	ENST00000304056	human	ensembl	69_37n	-1	known	missense	c.1834	p.E612Q	1.000	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852	93	0	0	71	44	38.26	-	-	-	G	32908995	C	G	32908995	3	3	677	1	0	0	0	0	1	0	0	0	8047	835	29	2	41	2	KBTBD2	7	32908995	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	320503	32908995	126229668	272	58338										
BBS9	0	genome.wustl.edu	37	chr7	33388707	33388707	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcagaacagagtgatattgCaaaaagccaaattatcagtc	8	7	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	33388707	33388707	C	G	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.1357	p.Q453E	0.868	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	143	0	0	117	69	37.1	-	-	-	G	33388707	C	G	33388707	3	3	677	1	0	0	0	0	1	0	0	0	1346	711	25	4	1403	4	BBS9	7	33388707	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	479712	33388707	125749956	273	58339										
NPC1L1	0	genome.wustl.edu	37	chr7	44571371	44571371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caccttgggcagggccagctCctggtccagtcccacgctga	12	16	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	44571371	44571371	C	G	SNP	NPC1L1	ENST00000289547	human	ensembl	69_37n	-1	known	missense	c.2620	p.E874Q	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	42	0	0	10	5	33.33	-	-	-	G	44571371	C	G	44571371	3	3	677	1	0	0	0	0	1	0	0	0	10643	864	30	2	1503	2	NPC1L1	7	44571371	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	11182664	44571371	114567292	274	58340										
TMED4	0	genome.wustl.edu	37	chr7	44621710	44621710	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttctcggtctcgccgatgtgGaagtagagcccctgggcgcc	14	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	44621710	44621710	G	C	SNP	TMED4	ENST00000457408	human	ensembl	69_37n	-1	known	missense	c.96	p.F32L	1.000	pfam_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED4	HGNC	ENSG00000158604	22	0	0	7	4	36.36	-	-	-	C	44621710	G	C	44621710	3	2	677	1	0	0	0	0	1	0	0	0	16101	1165	41	2	607	2	TMED4	7	44621710	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	50339	44621710	114516953	275	58341										
ABCA13	0	genome.wustl.edu	37	chr7	48313842	48313842	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatattttactgaattaattCtaagaccaatagaaatgtca	5	5	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	48313842	48313842	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.4579	p.L1527	0.068	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	35	0	0	25	13	34.21	-	-	-	T	48313842	C	T	48313842	2	4	677	1	0	0	0	0	0	0	0	1	31	912	32	2		2	ABCA13	7	48313842	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3692132	48313842	110824821	276	58342										
COBL	0	genome.wustl.edu	37	chr7	51261261	51261261	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtggttctgaaggcaaagttCaaccagtaggtccatcatcg	11	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	51261261	51261261	C	T	SNP	COBL	ENST00000395542	human	ensembl	69_37n	-1	known	missense	c.271	p.E91K	0.999	pfam_Cordon-bleu_domain	pfam_Cordon-bleu_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	96	0	0	68	40	37.04	-	-	-	T	51261261	C	T	51261261	3	4	677	1	0	0	0	0	1	0	0	0	3683	835	29	2	3558	2	COBL	7	51261261	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2947419	51261261	107877402	277	58343										
STAG3L3	0	genome.wustl.edu	37	chr7	72470029	72470029	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtaatctgacggcctccacTgccacactgtactctctgtc	7	15	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	72470029	72470029	T	A	SNP	STAG3L3	ENST00000308103	human	ensembl	69_37n	-1	known	silent	c.312	p.A104	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	STAG3L3	HGNC	ENSG00000174353	350	0	0	352	102	22.47	-	-	-	A	72470029	T	A	72470029	2	1	677	1	0	0	0	0	0	0	0	1	15337	1567	55	5		5	STAG3L3	7	72470029	Silent	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	21208768	72470029	86668634	278	58344										
SEMA3C	0	genome.wustl.edu	37	chr7	80374310	80374310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcattttctgtgattcatctCcctgctgatgttgctgccga	8	11	4	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	80374310	80374310	C	T	SNP	SEMA3C	ENST00000544525	human	ensembl	69_37n	-1	known	missense	c.2210	p.G737E	0.011	NULL	pfam_Semaphorin/CD100_Ag,pfam_Ig_I-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3C	HGNC	ENSG00000075223	149	0	0	120	45	27.27	-	-	-	T	80374310	C	T	80374310	3	4	677	1	0	0	0	0	1	0	0	0	14114	855	30	2	103	2	SEMA3C	7	80374310	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7904281	80374310	78764353	279	58345										
SEMA3A	0	genome.wustl.edu	37	chr7	83764203	83764203	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgttcctcatccaaaaggaaGgtatgataactggagctgtt	10	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	83764203	83764203	G	T	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	silent	c.177	p.T59	0.973	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	108	0	0	73	25	25.51	-	-	-	T	83764203	G	T	83764203	2	4	677	1	0	0	0	0	0	0	0	1	14112	987	35	4		4	SEMA3A	7	83764203	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3389893	83764203	75374460	280	58346										
ZNF804B	0	genome.wustl.edu	37	chr7	88956723	88956724	+	Frame_Shift_Ins	INS	-	-	A													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctaagtcatggaaagatgagINSaaaaaacaagaaaaagcact							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	88956723	88956724	-	A	INS	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	frame_shift_ins	c.315_316	p.Q107fs	0.992:1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	83	0	0	87	32	26.89	-	-	-	A	88956724	-	A	88956723	7	5	677	1	0	1	1	0	0	0	0	0	18264	933	33	0	325	0	ZNF804B	7	88956723	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	5192520	88956723	70181940	281	58347										
C7orf63	0	genome.wustl.edu	37	chr7	89933286	89933287	+	Frame_Shift_Ins	INS	-	-	A													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctatccaatgattagatacINSaaaaaaacctctatttacta							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	89933286	89933287	-	A	INS	C7orf63	ENST00000389297	human	ensembl	69_37n	1	known	frame_shift_ins	c.2054_2055	p.P688fs	1.000:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792	83	0	0	90	39	30.23	-	-	-	A	89933287	-	A	89933286	7	5	677	1	0	1	1	0	0	0	0	0	2432	478	17	0	2124	0	C7orf63	7	89933286	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	976563	89933286	69205377	282	58348										
AKAP9	0	genome.wustl.edu	37	chr7	91641902	91641902	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcaagaggaaaagatcaagGaacttcagaaaatacaccag	8	8	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	91641902	91641902	G	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.3514	p.E1172Q	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	88	0	0	51	37	42.05	-	-	-	C	91641902	G	C	91641902	3	2	677	1	0	0	0	0	1	0	0	0	459	1175	41	2	3512	2	AKAP9	7	91641902	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1708616	91641902	67496761	283	58349										
KRIT1	0	genome.wustl.edu	37	chr7	91843945	91843945	+	Frame_Shift_Del	DEL	T	T	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttaggaaaccttgcttgtgTtttttactctcataatttcc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	91843945	91843945	T	-	DEL	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	frame_shift_del	c.1710	p.K570fs	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	113	0	0	102	53	33.97	-	-	-	-	91843945	T	-	91843945	7	5	677	1	0	1	0	1	0	0	0	0	8498	1722	60	0	520	0	KRIT1	7	91843945	Frame_Shift_Del	DEL	T	TCGA-D8-A1J8-01A-11D-A13L-09	202043	91843945	67294718	284	58350										
CDK6	0	genome.wustl.edu	37	chr7	92404027	92404027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacctttatggtttcagtggGcactccaggctctggaactt	10	10	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	92404027	92404027	G	A	SNP	CDK6	ENST00000265734	human	ensembl	69_37n	-1	known	missense	c.352	p.P118S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK6	HGNC	ENSG00000105810	114	0	0	91	42	31.58	-	-	-	A	92404027	G	A	92404027	3	1	677	1	0	0	0	0	1	0	0	0	3177	1203	42	4	652	4	CDK6	7	92404027	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	560082	92404027	66734636	285	58351										
SAMD9	0	genome.wustl.edu	37	chr7	92733848	92733848	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaaatgaaatcagtttcctGacatcagaagctctttctct	6	9	4	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	92733848	92733848	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	silent	c.1563	p.V521	0.987	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	76	0	0	62	24	27.91	-	-	-	A	92733848	G	A	92733848	2	1	677	1	0	0	0	0	0	0	0	1	13912	1277	45	2		2	SAMD9	7	92733848	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	329821	92733848	66404815	286	58352										
PPP1R9A	0	genome.wustl.edu	37	chr7	94539589	94539589	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgagggctcccagcagagcaGggggaggaaatatggctcca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	94539589	94539589	G	-	DEL	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	frame_shift_del	c.164	p.R57fs	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	50	0	0	25	13	34.21	-	-	-	-	94539589	G	-	94539589	7	5	677	1	0	1	0	1	0	0	0	0	12455	1000	35	0	166	0	PPP1R9A	7	94539589	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	1805741	94539589	64599074	287	58353										
PON1	0	genome.wustl.edu	37	chr7	94935641	94935641	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcatgcttttcatacacatGaatcttatgagccagcaact	6	10	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	94935641	94935641	G	A	SNP	PON1	ENST00000222381	human	ensembl	69_37n	-1	known	missense	c.736	p.H246Y	1.000	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421	89	0	0	88	37	29.6	-	-	-	A	94935641	G	A	94935641	3	1	677	1	0	0	0	0	1	0	0	0	12322	1290	45	2	343	2	PON1	7	94935641	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	396052	94935641	64203022	288	58354										
PTCD1	0	genome.wustl.edu	37	chr7	99032720	99032720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgaggggcagctgagaggagGagctgctgaagggcgcccac	19	10	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	99032720	99032720	G	A	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	missense	c.293	p.S98F	0.808	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	40	0	0	20	7	25.93	-	-	-	A	99032720	G	A	99032720	3	1	677	1	0	0	0	0	1	0	0	0	12807	1174	41	2	1984	2	PTCD1	7	99032720	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4097079	99032720	60105943	289	58355										
C7orf61	0	genome.wustl.edu	37	chr7	100054424	100054425	+	Frame_Shift_Ins	INS	-	-	G													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggactgagccgggttgggtcINSggggggcagcatggcatcgg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	100054424	100054425	-	G	INS	C7orf61	ENST00000332375	human	ensembl	69_37n	-1	known	frame_shift_ins	c.572_571	p.R191fs	0.001:0.050	NULL	NULL	-	no_errors	C7orf61	HGNC	ENSG00000185955	68	0	0	19	6	24	-	-	-	G	100054425	-	G	100054424	7	5	677	1	0	1	1	0	0	0	0	0	2431	884	31	0	52	0	C7orf61	7	100054424	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	1021704	100054424	59084239	290	58356										
ZAN	0	genome.wustl.edu	37	chr7	100336212	100336212	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaagccaggcgtggggcctGatggcgacttctctagccct	14	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	100336212	100336212	G	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.742	p.D248H	0.001	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	43	0	0	17	15	46.88	-	-	-	C	100336212	G	C	100336212	3	2	677	1	0	0	0	0	1	0	0	0	17610	1290	45	2	764	2	ZAN	7	100336212	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	281788	100336212	58802451	291	58357										
MUC17	0	genome.wustl.edu	37	chr7	100681242	100681242	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttctgcaatcagcaccctttCaacaactcctgttgacacca	4	15	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	100681242	100681242	C	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	nonsense	c.6545	p.S2182*	0.119	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	149	0	0	164	83	33.6	-	-	-	G	100681242	C	G	100681242	4	3	677	1	0	0	0	0	0	1	0	0	10046	838	29	2	6555	2	MUC17	7	100681242	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	345030	100681242	58457421	292	58358										
CUX1	0	genome.wustl.edu	37	chr7	101758493	101758493	+	Frame_Shift_Del	DEL	A	A	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctttgcctttcagccctggAaaaaactcgaacagaattat							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	101758493	101758493	A	-	DEL	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	frame_shift_del	c.647	p.T218fs	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	87	0	0	62	28	30.77	-	-	-	-	101758493	A	-	101758493	7	5	677	1	0	1	0	1	0	0	0	0	4095	246	9	0	711	0	CUX1	7	101758493	Frame_Shift_Del	DEL	A	TCGA-D8-A1J8-01A-11D-A13L-09	1077251	101758493	57380170	293	58359										
CAPZA2	0	genome.wustl.edu	37	chr7	116557789	116557789	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtttttcatagactgccatCagtgagaattatcagacaat	7	7	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	116557789	116557789	C	T	SNP	CAPZA2	ENST00000361183	human	ensembl	69_37n	1	known	silent	c.729	p.I243	1.000	pfam_WASH_F-actin_cap_alpha	pfam_WASH_F-actin_cap_alpha,prints_WASH_F-actin_cap_alpha	-	no_errors	CAPZA2	HGNC	ENSG00000198898	98	0	0	75	46	38.02	-	-	-	T	116557789	C	T	116557789	2	4	677	1	0	0	0	0	0	0	0	1	2666	816	29	2		2	CAPZA2	7	116557789	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14799296	116557789	42580874	294	58360										
ING3	0	genome.wustl.edu	37	chr7	120607994	120607994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttacatctacacaggttgtcGaaataataattccacagcct	5	10	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	120607994	120607994	G	A	SNP	ING3	ENST00000315870	human	ensembl	69_37n	1	known	missense	c.563	p.R188Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING3	HGNC	ENSG00000071243	78	0	0	73	23	23.96	-	-	-	A	120607994	G	A	120607994	3	1	677	1	0	0	0	0	1	0	0	0	7791	1058	37	1	609	1	ING3	7	120607994	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4050205	120607994	38530669	295	58361										
CADPS2	0	genome.wustl.edu	37	chr7	121985736	121985736	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccagatccattcctggtttCtgttgtgaaggaaaagcagg	12	8	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	121985736	121985736	C	G	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	splice_site	c.3505-1	e28-1	1.000	-	-	-	no_errors	CADPS2	HGNC	ENSG00000081803	117	0	0	129	74	36.45	-	-	-	G	121985736	C	G	121985736	5	3	677	1	0	0	0	0	0	0	1	0	2596	927	32	2	398	2	CADPS2	7	121985736	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1377742	121985736	37152927	296	58362										
CADPS2	0	genome.wustl.edu	37	chr7	122111514	122111514	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcaccattttctgaatgttCcatcagttctgcaaggtagc	8	10	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	122111514	122111514	C	A	SNP	CADPS2	ENST00000449022	human	ensembl	69_37n	-1	known	nonsense	c.2101	p.E701*	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	115	0	0	87	47	35.07	-	-	-	A	122111514	C	A	122111514	4	1	677	1	0	0	0	0	0	1	0	0	2596	864	30	2	1901	2	CADPS2	7	122111514	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	125778	122111514	37027149	297	58363										
RBM28	0	genome.wustl.edu	37	chr7	127975956	127975956	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttctatattctcttcctcttCatcttcatcatcaaaaaccc	0	14	8	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	127975956	127975956	C	T	SNP	RBM28	ENST00000223073	human	ensembl	69_37n	-1	known	missense	c.754	p.E252K	0.010	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344	356	0	0	308	146	32.16	-	-	-	T	127975956	C	T	127975956	3	4	677	1	0	0	0	0	1	0	0	0	13211	835	29	2	1577	2	RBM28	7	127975956	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5864442	127975956	31162707	298	58364										
ZC3HC1	0	genome.wustl.edu	37	chr7	129680797	129680797	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	taccttatacttacatctgtCaaagtcaaaagctggttgta	6	8	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	129680797	129680797	C	G	SNP	ZC3HC1	ENST00000358303	human	ensembl	69_37n	-1	known	missense	c.403	p.D135H	1.000	pfam_Znf_C3HC-like	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	78	0	0	67	42	38.53	-	-	-	G	129680797	C	G	129680797	3	3	677	1	0	0	0	0	1	0	0	0	17673	826	29	2	1137	2	ZC3HC1	7	129680797	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1704841	129680797	29457866	299	58365										
CPA1	0	genome.wustl.edu	37	chr7	130025744	130025744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgggaccaagttcaactatgGcagcatcatcaaggcaattt	9	10	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	130025744	130025744	G	A	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.1052	p.G351D	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	160	0	0	91	53	36.55	-	-	-	A	130025744	G	A	130025744	3	1	677	1	0	0	0	0	1	0	0	0	3819	1203	42	4	1086	4	CPA1	7	130025744	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	344947	130025744	29112919	300	58366										
PODXL	0	genome.wustl.edu	37	chr7	131189073	131189073	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccaccggcagaccggactaGaggtgtgtgtcttcctcctc	12	14	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	131189073	131189073	G	T	SNP	PODXL	ENST00000541194	human	ensembl	69_37n	-1	known	silent	c.1680	p.L560	1.000	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	59	0	0	33	20	37.74	-	-	-	T	131189073	G	T	131189073	2	4	677	1	0	0	0	0	0	0	0	1	12254	929	33	2		2	PODXL	7	131189073	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1163329	131189073	27949590	301	58367										
CNOT4	0	genome.wustl.edu	37	chr7	135082944	135082944	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgggaattatcaccgttccCtatactgagagaatctgaag	9	9	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	135082944	135082944	C	A	SNP	CNOT4	ENST00000541284	human	ensembl	69_37n	-1	known	missense	c.856	p.G286W	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,pfscan_Znf_RING,pfscan_RRM_dom	-	no_errors	CNOT4	HGNC	ENSG00000080802	122	0	0	113	59	34.3	-	-	-	A	135082944	C	A	135082944	3	1	677	1	0	0	0	0	1	0	0	0	3651	681	24	4	1193	4	CNOT4	7	135082944	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3893871	135082944	24055719	302	58368										
NUP205	0	genome.wustl.edu	37	chr7	135272692	135272692	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctcttcagactccgactatCatgggctcttatctaggggt	9	12	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	135272692	135272692	C	G	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	missense	c.1425	p.I475M	0.973	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	87	0	0	83	34	29.06	-	-	-	G	135272692	C	G	135272692	3	3	677	1	0	0	0	0	1	0	0	0	10832	816	29	2	1463	2	NUP205	7	135272692	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	189748	135272692	23865971	303	58369										
TRIM24	0	genome.wustl.edu	37	chr7	138269670	138269670	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggaagaaacgcctcaaaagcAttgaagaacgccagttgctt	10	9	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	138269670	138269670	A	G	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	missense	c.3127	p.I1043V	0.134	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	20	0	0	27	15	35.71	-	-	-	G	138269670	A	G	138269670	3	3	677	1	0	0	0	0	1	0	0	0	16594	217	8	5	3201	5	TRIM24	7	138269670	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	2996978	138269670	20868993	304	58370										
HIPK2	0	genome.wustl.edu	37	chr7	139281600	139281600	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtggtgctggaggccacgtcGccccacccacaggtgaccga	14	15	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	139281600	139281600	G	A	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	silent	c.2580	p.G860	0.166	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	57	0	0	24	14	36.84	-	-	-	A	139281600	G	A	139281600	2	1	677	1	0	0	0	0	0	0	0	1	7168	1074	38	1		1	HIPK2	7	139281600	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1011930	139281600	19857063	305	58371										
MGAM	0	genome.wustl.edu	37	chr7	141755406	141755406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcagtgacatgtttatccgCatctccacccgccttccctc	5	17	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	141755406	141755406	C	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.3363	p.R1121	0.983	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	175	0	0	145	96	39.83	-	-	-	T	141755406	C	T	141755406	2	4	677	1	0	0	0	0	0	0	0	1	9612	697	25	4		4	MGAM	7	141755406	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2473806	141755406	17383257	306	58372										
ZNF212	0	genome.wustl.edu	37	chr7	148947404	148947404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaagatggagtcccaggctgCccggctacagagcctggagg	16	11	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	148947404	148947404	C	T	SNP	ZNF212	ENST00000335870	human	ensembl	69_37n	1	known	missense	c.179	p.A60V	1.000	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260	68	0	0	56	11	16.42	-	-	-	T	148947404	C	T	148947404	3	4	677	1	0	0	0	0	1	0	0	0	17864	739	26	4	185	4	ZNF212	7	148947404	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7191998	148947404	10191259	307	58373										
KRBA1	0	genome.wustl.edu	37	chr7	149427568	149427568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgtccctctgtccccatgtCctggtgggacccctgctggc	11	17	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	149427568	149427568	C	G	SNP	KRBA1	ENST00000255992	human	ensembl	69_37n	1	known	missense	c.2053	p.P685A	0.000	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619	60	0	0	39	18	31.58	-	-	-	G	149427568	C	G	149427568	3	3	677	1	0	0	0	0	1	0	0	0	8492	855	30	2	2109	2	KRBA1	7	149427568	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	480164	149427568	9711095	308	58374										
TMEM176B	0	genome.wustl.edu	37	chr7	150490276	150490276	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggtagggaagacagggtctGagcgatcacacacagtgtcg	15	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	150490276	150490276	G	C	SNP	TMEM176B	ENST00000326442	human	ensembl	69_37n	-1	known	nonsense	c.500	p.S167*	0.000	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM176B	HGNC	ENSG00000106565	120	0	0	92	52	36.11	-	-	-	C	150490276	G	C	150490276	4	2	677	1	0	0	0	0	0	1	0	0	16188	1294	45	2	324	2	TMEM176B	7	150490276	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1062708	150490276	8648387	309	58375										
WDR60	0	genome.wustl.edu	37	chr7	158715127	158715127	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcagatggtggtctccgttCacgacttacccgagaagagc	13	11	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	7	158715127	158715127	C	A	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	missense	c.1981	p.H661N	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	132	0	0	107	49	31.41	-	-	-	A	158715127	C	A	158715127	3	1	677	1	0	0	0	0	1	0	0	0	17408	826	29	2	2043	2	WDR60	7	158715127	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8224851	158715127	423536	310	58376										
DLGAP2	0	genome.wustl.edu	37	chr8	1497432	1497432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaccaccaccacgcccaccaCgccaagcacagcaagaggag	9	18	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	1497432	1497432	C	T	SNP	DLGAP2	ENST00000520901	human	ensembl	69_37n	1	known	missense	c.623	p.T208M	0.002	NULL	pfam_GKAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DLGAP2	HGNC	ENSG00000198010	13	0	0	5	4	44.44	-	-	-	T	1497432	C	T	1497432	3	4	677	1	0	0	0	0	1	0	0	0	4596	535	19	1	575	1	DLGAP2	8	1497432	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		1497432	144866590	311	58377										
MYOM2	0	genome.wustl.edu	37	chr8	2017432	2017432	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cactgcgacatactcagcagTggccaccaatgcccacggac	9	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	2017432	2017432	T	G	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.689	p.V230G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	131	0	0	39	59	60.2	-	-	-	G	2017432	T	G	2017432	3	3	677	1	0	0	0	0	1	0	0	0	10164	1696	59	5	711	5	MYOM2	8	2017432	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	520000	2017432	144346590	312	58378										
PRSS55	0	genome.wustl.edu	37	chr8	10390543	10390543	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccggatacaagaatgagagCtatgatgcctgcaaggtaac	12	8	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	10390543	10390543	C	T	SNP	PRSS55	ENST00000328655	human	ensembl	69_37n	1	known	silent	c.726	p.S242	0.003	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647	99	0	0	77	15	16.3	-	-	-	T	10390543	C	T	10390543	2	4	677	1	0	0	0	0	0	0	0	1	12714	796	28	4		4	PRSS55	8	10390543	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8373111	10390543	135973479	313	58379										
ADAMDEC1	0	genome.wustl.edu	37	chr8	24259557	24259557	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgacaacaccagtgtgtggGaaccaccttctagaagtggg	12	9	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	24259557	24259557	G	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	1	known	silent	c.1272	p.G424	0.997	pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	78	0	0	33	45	57.69	-	-	-	A	24259557	G	A	24259557	2	1	677	1	0	0	0	0	0	0	0	1	254	1161	41	2		2	ADAMDEC1	8	24259557	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	13869014	24259557	122104465	314	58380										
INTS9	0	genome.wustl.edu	37	chr8	28635395	28635395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggatgaagttcagccgggtgTcgatggggcagtagatgcat	17	6	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	28635395	28635395	T	C	SNP	INTS9	ENST00000521022	human	ensembl	69_37n	-1	known	missense	c.1346	p.D449G	1.000	NULL	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299	131	1	0.76	67	13	16.25	-	-	-	C	28635395	T	C	28635395	3	2	677	1	0	0	0	0	1	0	0	0	7839	1667	58	5	650	5	INTS9	8	28635395	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	4375838	28635395	117728627	315	58381										
PROSC	0	genome.wustl.edu	37	chr8	37630348	37630348	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtgaacagttcctggcagaGaaaaggttctcctgaaaggt	12	7	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	37630348	37630348	G	C	SNP	PROSC	ENST00000328195	human	ensembl	69_37n	1	known	missense	c.395	p.R132T	0.997	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	-	no_errors	PROSC	HGNC	ENSG00000147471	80	0	0	42	46	52.27	-	-	-	C	37630348	G	C	37630348	3	2	677	1	0	0	0	0	1	0	0	0	12640	942	33	2	413	2	PROSC	8	37630348	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	8994953	37630348	108733674	316	58382										
NSMAF	0	genome.wustl.edu	37	chr8	59498560	59498560	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgaggacatggcgactatCtgcaacacaaggtgagactc	12	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	59498560	59498560	C	G	SNP	NSMAF	ENST00000427130	human	ensembl	69_37n	-1	known	splice_site	c.2540-1	e29-1	1.000	-	-	-	no_errors	NSMAF	HGNC	ENSG00000035681	77	0	0	23	23	50	-	-	-	G	59498560	C	G	59498560	5	3	677	1	0	0	0	0	0	0	1	0	10747	927	32	2	319	2	NSMAF	8	59498560	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	21868212	59498560	86865462	317	58383										
VCPIP1	0	genome.wustl.edu	37	chr8	67578719	67578719	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtcacccagtaaggcgcaatCgaacagttcgccctggttca	10	13	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	67578719	67578719	C	G	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.475	p.D159H	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	46	0	0	16	25	60.98	-	-	-	G	67578719	C	G	67578719	3	3	677	1	0	0	0	0	1	0	0	0	17238	884	31	3	3205	3	VCPIP1	8	67578719	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8080159	67578719	78785303	318	58384										
CSPP1	0	genome.wustl.edu	37	chr8	68087602	68087602	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcatcacaccttagagattCagcagcaagccctgctaaga	7	12	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	68087602	68087602	C	T	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	nonsense	c.3025	p.Q1009*	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	85	0	0	35	24	40.68	-	-	-	T	68087602	C	T	68087602	4	4	677	1	0	0	0	0	0	1	0	0	3994	827	29	2	3232	2	CSPP1	8	68087602	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	508883	68087602	78276420	319	58385										
HNF4G	0	genome.wustl.edu	37	chr8	76456180	76456180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtgcaagggtttcttcagaCgcagcattcgtaagagtcac	12	9	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	76456180	76456180	C	T	SNP	HNF4G	ENST00000396423	human	ensembl	69_37n	1	known	missense	c.223	p.R75C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749	116	0	0	41	54	56.84	-	-	-	T	76456180	C	T	76456180	3	4	677	1	0	0	0	0	1	0	0	0	7305	536	19	1	229	1	HNF4G	8	76456180	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8368578	76456180	69907842	320	58386										
KIAA1429	0	genome.wustl.edu	37	chr8	95523890	95523890	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttttgcagaactcgaataaaCgtgtccattccttcagcaga	7	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	95523890	95523890	C	T	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	silent	c.2913	p.T971	0.997	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	25	0	0	21	15	41.67	-	-	-	T	95523890	C	T	95523890	2	4	677	1	0	0	0	0	0	0	0	1	8283	523	19	1		1	KIAA1429	8	95523890	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	19067710	95523890	50840132	321	58387										
SYBU	0	genome.wustl.edu	37	chr8	110655102	110655102	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcatatggggccgaagaatCaaccggggaattcggcttcg	15	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	110655102	110655102	C	G	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.84	p.L28F	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	79	0	0	10	23	69.7	-	-	-	G	110655102	C	G	110655102	3	3	677	1	0	0	0	0	1	0	0	0	15518	825	29	2	1931	2	SYBU	8	110655102	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	15131212	110655102	35708920	322	58388										
POU5F1B	0	genome.wustl.edu	37	chr8	128429115	128429115	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcactgcactgtactcctCagtccctttccctgaggggg	9	15	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	128429115	128429115	C	G	SNP	POU5F1B	ENST00000391675	human	ensembl	69_37n	1	known	nonsense	c.1004	p.S335*	0.043	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU5F1B	HGNC	ENSG00000212993	101	0	0	33	42	56	-	-	-	G	128429115	C	G	128429115	4	3	677	1	0	0	0	0	0	1	0	0	12355	838	29	2	1006	2	POU5F1B	8	128429115	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	17774013	128429115	17934907	323	58389										
MAPK15	0	genome.wustl.edu	37	chr8	144800433	144800433	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccttgacgtgatccgggcaGagaacgacagggacatttac	12	10	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	144800433	144800433	G	C	SNP	MAPK15	ENST00000338033	human	ensembl	69_37n	1	known	missense	c.247	p.E83Q	0.918	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085	26	0	0	3	10	76.92	-	-	-	C	144800433	G	C	144800433	3	2	677	1	0	0	0	0	1	0	0	0	9348	943	33	2	261	2	MAPK15	8	144800433	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	16371318	144800433	1563589	324	58390										
ADCK5	0	genome.wustl.edu	37	chr8	145615938	145615938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccaatgttgtccttcgagggGtggaagaggtttgtcctggt	15	7	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	145615938	145615938	G	A	SNP	ADCK5	ENST00000308860	human	ensembl	69_37n	1	known	missense	c.334	p.V112M	0.962	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK5	HGNC	ENSG00000173137	140	0	0	35	29	45.31	-	-	-	A	145615938	G	A	145615938	3	1	677	1	0	0	0	0	1	0	0	0	291	1261	44	4	348	4	ADCK5	8	145615938	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	815505	145615938	748084	325	58391										
CPSF1	0	genome.wustl.edu	37	chr8	145625827	145625827	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagatgacggggtgcaccttCtgcgtgatgttcagtgagat	14	8	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	8	145625827	145625827	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	silent	c.747	p.Q249	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	64	0	0	11	13	54.17	-	-	-	T	145625827	C	T	145625827	2	4	677	1	0	0	0	0	0	0	0	1	3854	912	32	2		2	CPSF1	8	145625827	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9889	145625827	738195	326	58392										
KIAA0020	0	genome.wustl.edu	37	chr9	2811363	2811363	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctttaatggcacattacctCtccgtccttgccaccaggat	7	14	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	2811363	2811363	C	G	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.1633	p.E545Q	1.000	pfam_CPL,superfamily_ARM-type_fold	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	89	0	0	53	32	37.65	-	-	-	G	2811363	C	G	2811363	3	3	677	1	0	0	0	0	1	0	0	0	8204	922	32	2	329	2	KIAA0020	9	2811363	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		2811363	138402068	327	58393										
RLN2	0	genome.wustl.edu	37	chr9	5300362	5300362	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atctcagacagggttaacttCagctcctgtggcaaattagc	9	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	5300362	5300362	C	T	SNP	RLN2	ENST00000381627	human	ensembl	69_37n	-1	known	silent	c.294	p.L98	0.003	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN2	HGNC	ENSG00000107014	191	0	0	151	63	29.44	-	-	-	T	5300362	C	T	5300362	2	4	677	1	0	0	0	0	0	0	0	1	13478	813	29	2		2	RLN2	9	5300362	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2488999	5300362	135913069	328	58394										
GLDC	0	genome.wustl.edu	37	chr9	6644693	6644693	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgatcaattcatcaatgctCtaaaattaaaacgcaaggca	5	9	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	6644693	6644693	C	T	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	splice_site	c.256-1	e2-1	1.000	-	-	-	no_errors	GLDC	HGNC	ENSG00000178445	58	0	0	41	23	35.94	-	-	-	T	6644693	C	T	6644693	5	4	677	1	0	0	0	0	0	0	1	0	6485	927	32	2	2903	2	GLDC	9	6644693	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1344331	6644693	134568738	329	58395										
MPDZ	0	genome.wustl.edu	37	chr9	13176326	13176326	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtccaccgaaggtgtattctCatcctgtctttgcaggagat	10	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	13176326	13176326	C	A	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	nonsense	c.2740	p.E914*	0.185	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	87	0	0	78	56	41.79	-	-	-	A	13176326	C	A	13176326	4	1	677	1	0	0	0	0	0	1	0	0	9794	835	29	2	3493	2	MPDZ	9	13176326	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6531633	13176326	128037105	330	58396										
TTC39B	0	genome.wustl.edu	37	chr9	15175073	15175073	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccccctggcttttatacaaAgatgccaattcaaatagagt	6	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	15175073	15175073	A	G	SNP	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	silent	c.1902	p.S634	1.000	smart_TPR_repeat	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	82	0	0	78	43	35.54	-	-	-	G	15175073	A	G	15175073	2	3	677	1	0	0	0	0	0	0	0	1	16805	59	3	5		5	TTC39B	9	15175073	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1998747	15175073	126038358	331	58397										
TAF1L	0	genome.wustl.edu	37	chr9	32632013	32632013	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cccctcttcatctcgaaatgTgcgataaatcttgagacagt	7	11	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	32632013	32632013	T	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3565	p.T1189S	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	164	0	0	125	49	28.16	-	-	-	A	32632013	T	A	32632013	3	1	677	1	0	0	0	0	1	0	0	0	15615	1696	59	5	1919	5	TAF1L	9	32632013	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	17456940	32632013	108581418	332	58398										
UNC13B	0	genome.wustl.edu	37	chr9	35237784	35237784	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaactagaaacccaactcctCataaaattttgcttgataca	4	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	35237784	35237784	C	T	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	missense	c.355	p.H119Y	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	105	0	0	72	40	35.71	-	-	-	T	35237784	C	T	35237784	3	4	677	1	0	0	0	0	1	0	0	0	17082	826	29	2	373	2	UNC13B	9	35237784	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2605771	35237784	105975647	333	58399										
CA9	0	genome.wustl.edu	37	chr9	35679912	35679912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcggctacagctgaacttccGagcgacgcagcctttgaatg	11	12	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	35679912	35679912	G	A	SNP	CA9	ENST00000378357	human	ensembl	69_37n	1	known	missense	c.1127	p.R376Q	0.944	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	120	0	0	94	43	31.16	-	-	-	A	35679912	G	A	35679912	3	1	677	1	0	0	0	0	1	0	0	0	2549	1058	37	1	1157	1	CA9	9	35679912	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	442128	35679912	105533519	334	58400										
FRMPD1	0	genome.wustl.edu	37	chr9	37744937	37744937	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctcctcagcaagcactcctCactgttctaacccaggttca	6	16	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	37744937	37744937	C	G	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.2908	p.H970D	0.006	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	33	0	0	40	16	28.57	-	-	-	G	37744937	C	G	37744937	3	3	677	1	0	0	0	0	1	0	0	0	6106	826	29	2	2966	2	FRMPD1	9	37744937	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2065025	37744937	103468494	335	58401										
ZNF658	0	genome.wustl.edu	37	chr9	40773227	40773227	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cactacattcatagggttttCtacctgtgtgaattctctga	7	9	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	40773227	40773227	C	T	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.2048	p.R683K	0.587	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	81	0	0	120	63	34.43	-	-	-	T	40773227	C	T	40773227	3	4	677	1	0	0	0	0	1	0	0	0	18165	913	32	2	1135	2	ZNF658	9	40773227	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3028290	40773227	100440204	336	58402										
ZNF658	0	genome.wustl.edu	37	chr9	40773922	40773922	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtttactgaggtttgaattCtgacagaaagctttcccaca	8	8	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	40773922	40773922	C	G	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.1353	p.Q451H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	40	0	0	43	25	36.76	-	-	-	G	40773922	C	G	40773922	3	3	677	1	0	0	0	0	1	0	0	0	18165	912	32	2	1830	2	ZNF658	9	40773922	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	695	40773922	100439509	337	58403										
APBA1	0	genome.wustl.edu	37	chr9	72131547	72131547	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcctcgtacacgtgctcctGgaggccgccgtagtcggcat	12	15	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	72131547	72131547	G	A	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	nonsense	c.580	p.Q194*	0.998	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	29	0	0	16	9	36	-	-	-	A	72131547	G	A	72131547	4	1	677	1	0	0	0	0	0	1	0	0	757	1357	47	4	1981	4	APBA1	9	72131547	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	31357625	72131547	69081884	338	58404										
TRPM6	0	genome.wustl.edu	37	chr9	77377431	77377431	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggggtctgcccagtcagatGaacaagaacctcagtctgga	12	10	4	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	77377431	77377431	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.4156	p.H1386Y	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	70	0	0	27	25	48.08	-	-	-	A	77377431	G	A	77377431	3	1	677	1	0	0	0	0	1	0	0	0	16686	1290	45	2	1968	2	TRPM6	9	77377431	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5245884	77377431	63836000	339	58405										
VPS13A	0	genome.wustl.edu	37	chr9	79898501	79898501	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttatgaggccttcagaaactGaaataaacgcaaagctaagg	9	7	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	79898501	79898501	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.3274	p.E1092Q	0.993	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	65	0	0	58	35	37.63	-	-	-	C	79898501	G	C	79898501	3	2	677	1	0	0	0	0	1	0	0	0	17286	1291	45	2	3396	2	VPS13A	9	79898501	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2521070	79898501	61314930	340	58406										
NTRK2	0	genome.wustl.edu	37	chr9	87342753	87342753	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acggagtaccacggctgcctCcagctggataatcccactca	9	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	87342753	87342753	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	silent	c.1038	p.L346	1.000	pfam_Ig_I-set,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	79	0	0	100	25	20	-	-	-	T	87342753	C	T	87342753	2	4	677	1	0	0	0	0	0	0	0	1	10780	842	30	2		2	NTRK2	9	87342753	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7444252	87342753	53870678	341	58407										
S1PR3	0	genome.wustl.edu	37	chr9	91617141	91617141	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaagtaaatcaagcagcagCaacaatagcagccactctcc	7	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	91617141	91617141	C	T	SNP	S1PR3	ENST00000358157	human	ensembl	69_37n	1	known	silent	c.1026	p.S342	1.000	prints_EDG1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG3_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694	62	0	0	28	14	33.33	-	-	-	T	91617141	C	T	91617141	2	4	677	1	0	0	0	0	0	0	0	1	13881	709	25	4		4	S1PR3	9	91617141	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4274388	91617141	49596290	342	58408										
IARS	0	genome.wustl.edu	37	chr9	95025286	95025286	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccattcacaattacgttcttGaaaggcggttgtccaaagag	9	9	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	95025286	95025286	G	A	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	silent	c.1752	p.F584	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	83	0	0	52	27	34.18	-	-	-	A	95025286	G	A	95025286	2	1	677	1	0	0	0	0	0	0	0	1	7527	1281	45	2		2	IARS	9	95025286	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3408145	95025286	46188145	343	58409										
PHF2	0	genome.wustl.edu	37	chr9	96439925	96439925	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagaggcttgggaaaattttGaaaattcatcggaacgggaa	12	5	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	96439925	96439925	G	A	SNP	PHF2	ENST00000359246	human	ensembl	69_37n	1	known	silent	c.3258	p.L1086	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724	89	0	0	39	20	33.9	-	-	-	A	96439925	G	A	96439925	2	1	677	1	0	0	0	0	0	0	0	1	11904	1281	45	2		2	PHF2	9	96439925	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1414639	96439925	44773506	344	58410										
FAM22F	0	genome.wustl.edu	37	chr9	97080989	97080989	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttctgagcagatggagactGaagagctccctggggtcctc	13	10	1	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	97080989	97080989	G	A	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	nonsense	c.2029	p.Q677*	0.000	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	131	0	0	80	43	34.96	-	-	-	A	97080989	G	A	97080989	4	1	677	1	0	0	0	0	0	1	0	0	5587	1299	45	2	245	2	FAM22F	9	97080989	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	641064	97080989	44132442	345	58411										
FAM22F	0	genome.wustl.edu	37	chr9	97088185	97088185	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacagggaggtgccagggttCacggtcacgccgggtcccag	17	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	97088185	97088185	C	T	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	silent	c.48	p.V16	0.002	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	62	0	0	29	21	42	-	-	-	T	97088185	C	T	97088185	2	4	677	1	0	0	0	0	0	0	0	1	5587	813	29	2		2	FAM22F	9	97088185	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7196	97088185	44125246	346	58412										
PTCH1	0	genome.wustl.edu	37	chr9	98209244	98209244	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcgcattccacgtcctgcaGctcaatgacttccaccttcg	6	17	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	98209244	98209244	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	silent	c.4294	p.L1432	1.000	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	60	0	0	25	17	40.48	-	-	-	A	98209244	G	A	98209244	2	1	677	1	0	0	0	0	0	0	0	1	12810	962	34	4		4	PTCH1	9	98209244	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1121059	98209244	43004187	347	58413										
TRIM14	0	genome.wustl.edu	37	chr9	100862276	100862276	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	accctgttggagagatcattCatgatgtcaagttgctctct	9	9	4	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	100862276	100862276	C	T	SNP	TRIM14	ENST00000341469	human	ensembl	69_37n	-1	known	missense	c.474	p.M158I	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM14	HGNC	ENSG00000106785	128	0	0	82	36	30.51	-	-	-	T	100862276	C	T	100862276	3	4	677	1	0	0	0	0	1	0	0	0	16585	826	29	2	870	2	TRIM14	9	100862276	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2653032	100862276	40351155	348	58414										
ACTL7A	0	genome.wustl.edu	37	chr9	111625579	111625579	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggagatgttcttcaagccatCtctcatcaagtccatgcagc	8	12	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	111625579	111625579	C	G	SNP	ACTL7A	ENST00000333999	human	ensembl	69_37n	1	known	missense	c.977	p.S326C	0.999	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7A	HGNC	ENSG00000187003	34	0	0	20	17	45.95	-	-	-	G	111625579	C	G	111625579	3	3	677	1	0	0	0	0	1	0	0	0	200	913	32	2	979	2	ACTL7A	9	111625579	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	10763303	111625579	29587852	349	58415										
PTPN3	0	genome.wustl.edu	37	chr9	112168784	112168784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagctcccgtgagtgggactCccggctggctttgatgaaca	13	12	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	112168784	112168784	C	G	SNP	PTPN3	ENST00000374541	human	ensembl	69_37n	-1	known	missense	c.1750	p.E584Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN3	HGNC	ENSG00000070159	110	0	0	83	33	28.45	-	-	-	G	112168784	C	G	112168784	3	3	677	1	0	0	0	0	1	0	0	0	12872	864	30	2	1027	2	PTPN3	9	112168784	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	543205	112168784	29044647	350	58416										
MUSK	0	genome.wustl.edu	37	chr9	113449439	113449439	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atccgggagaatgggcagctCctcaccatcctgagtgtgga	13	11	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	113449439	113449439	C	G	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	silent	c.249	p.L83	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	154	0	0	116	64	35.56	-	-	-	G	113449439	C	G	113449439	2	3	677	1	0	0	0	0	0	0	0	1	10061	842	30	2		2	MUSK	9	113449439	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1280655	113449439	27763992	351	58417										
C9orf84	0	genome.wustl.edu	37	chr9	114548233	114548233	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttattatcagtaactgctAcatggtaactttcatcttga	5	7	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	114548233	114548233	A	G	SNP	C9orf84	ENST00000374283	human	ensembl	69_37n	-1	known	missense	c.128	p.V43A	0.000	NULL	NULL	-	no_errors	C9orf84	HGNC	ENSG00000165181	120	0	0	82	46	35.94	-	-	-	G	114548233	A	G	114548233	3	3	677	1	0	0	0	0	1	0	0	0	2525	406	14	5		5	C9orf84	9	114548233	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1098794	114548233	26665198	352	58418										
HSDL2	0	genome.wustl.edu	37	chr9	115232817	115232817	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aatgaatcagatgaatgccaGactgtgaaggaaaatataaa	9	4	1	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	115232817	115232817	G	C	SNP	HSDL2	ENST00000398805	human	ensembl	69_37n	1	known	missense	c.1250	p.R417T	0.983	superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	59	0	0	43	32	42.67	-	-	-	C	115232817	G	C	115232817	3	2	677	1	0	0	0	0	1	0	0	0	7445	942	33	2	1292	2	HSDL2	9	115232817	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	684584	115232817	25980614	353	58419										
DFNB31	0	genome.wustl.edu	37	chr9	117228550	117228550	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcaggccctccctcaccttGagcccgctgccttctgcttc	7	20	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	117228550	117228550	G	C	SNP	DFNB31	ENST00000362057	human	ensembl	69_37n	-1	known	silent	c.960	p.L320	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	57	0	0	25	13	34.21	-	-	-	C	117228550	G	C	117228550	2	2	677	1	0	0	0	0	0	0	0	1	4491	1277	45	2		2	DFNB31	9	117228550	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1995733	117228550	23984881	354	58420										
PAPPA	0	genome.wustl.edu	37	chr9	118973980	118973980	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acacccacaccatgatccatGagattggtcacagcctgggc	9	14	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	118973980	118973980	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.1687	p.E563K	1.000	pfam_Peptidase_M43	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	78	0	0	42	27	39.13	-	-	-	A	118973980	G	A	118973980	3	1	677	1	0	0	0	0	1	0	0	0	11505	1291	45	2	1701	2	PAPPA	9	118973980	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1745430	118973980	22239451	355	58421										
DBC1	0	genome.wustl.edu	37	chr9	121976415	121976415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acttctcttgcagatactgaGgaaagattatctgaagacct	8	8	2	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	121976415	121976415	G	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	missense	c.704	p.P235L	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	57	0	0	49	27	35.53	-	-	-	A	121976415	G	A	121976415	3	1	677	1	0	0	0	0	1	0	0	0	4279	1000	35	4	1593	4	DBC1	9	121976415	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3002435	121976415	19237016	356	58422										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123298718	123298718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcttcttcatctctgaaagCttgctttccaaacgcaaccg	5	13	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	123298718	123298718	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	silent	c.594	p.K198	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	111	0	0	70	42	37.5	-	-	-	T	123298718	C	T	123298718	2	4	677	1	0	0	0	0	0	0	0	1	3175	796	28	4		4	CDK5RAP2	9	123298718	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1322303	123298718	17914713	357	58423										
GARNL3	0	genome.wustl.edu	37	chr9	130111209	130111209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtattgcctcacagccgtggGagccccagtgtttctgcagt	12	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	130111209	130111209	G	A	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.1438	p.E480K	1.000	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	160	1	0.62	117	57	32.76	-	-	-	A	130111209	G	A	130111209	3	1	677	1	0	0	0	0	1	0	0	0	6291	1175	41	2	1504	2	GARNL3	9	130111209	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6812491	130111209	11102222	358	58424										
LRRC8A	0	genome.wustl.edu	37	chr9	131669651	131669651	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actcctgcaatgattcgttcCggggctgggcagcccctggc	13	14	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	131669651	131669651	C	A	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	silent	c.208	p.R70	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	46	0	0	15	9	37.5	-	-	-	A	131669651	C	A	131669651	2	1	677	1	0	0	0	0	0	0	0	1	9087	643	23	3		3	LRRC8A	9	131669651	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1558442	131669651	9543780	359	58425										
DDX31	0	genome.wustl.edu	37	chr9	135534114	135534114	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacagggatgcaataggcaaGagttttacctttcaaaaaaa	8	7	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	135534114	135534114	G	C	SNP	DDX31	ENST00000372159	human	ensembl	69_37n	-1	known	missense	c.847	p.L283V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	126	0	0	83	43	34.13	-	-	-	C	135534114	G	C	135534114	3	2	677	1	0	0	0	0	1	0	0	0	4387	942	33	2	1775	2	DDX31	9	135534114	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3864463	135534114	5679317	360	58426										
BRD3	0	genome.wustl.edu	37	chr9	136901437	136901437	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatgcctgcttgccgcctttCttcagctgtctggggcagga	13	12	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	136901437	136901437	C	T	SNP	BRD3	ENST00000303407	human	ensembl	69_37n	-1	known	silent	c.1653	p.K551	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925	60	0	0	33	18	35.29	-	-	-	T	136901437	C	T	136901437	2	4	677	1	0	0	0	0	0	0	0	1	1511	912	32	2		2	BRD3	9	136901437	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1367323	136901437	4311994	361	58427										
KIAA1984	0	genome.wustl.edu	37	chr9	139697137	139697137	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgctggcaggataccccattGagctggacaagctgcagaac	12	11	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	9	139697137	139697137	G	C	SNP	KIAA1984	ENST00000338005	human	ensembl	69_37n	1	known	missense	c.565	p.E189Q	0.053	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	82	0	0	52	28	34.57	-	-	-	C	139697137	G	C	139697137	3	2	677	1	0	0	0	0	1	0	0	0	8318	1291	45	2	587	2	KIAA1984	9	139697137	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2795700	139697137	1516294	362	58428										
GATA3	0	genome.wustl.edu	37	chr10	8106094	8106094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcccctcattaagcccaagcGaaggctggtaagttctcggg	12	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	8106094	8106094	G	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.917	p.R306Q	1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	81	0	0	36	27	42.86	-	-	-	A	8106094	G	A	8106094	3	1	677	1	0	0	0	0	1	0	0	0	6305	1058	37	1	927	1	GATA3	10	8106094	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		8106094	127428653	363	58429										
CELF2	0	genome.wustl.edu	37	chr10	11356161	11356161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgaactccttgacctctctcGggactctgcaaggactggct	10	13	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	11356161	11356161	G	C	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	missense	c.1036	p.G346R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	136	0	0	42	47	52.81	-	-	-	C	11356161	G	C	11356161	3	2	677	1	0	0	0	0	1	0	0	0	3245	1116	39	3	1131	3	CELF2	10	11356161	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3250067	11356161	124178586	364	58430										
UPF2	0	genome.wustl.edu	37	chr10	12071427	12071427	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagaagttttcctctggtcgGctgtccggagcattttggtt	12	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	12071427	12071427	G	A	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	silent	c.462	p.S154	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	16	0	0	10	5	33.33	-	-	-	A	12071427	G	A	12071427	2	1	677	1	0	0	0	0	0	0	0	1	17101	1194	42	4		4	UPF2	10	12071427	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	715266	12071427	123463320	365	58431										
DHTKD1	0	genome.wustl.edu	37	chr10	12126594	12126594	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaggaagtgttagtctatctCaatcaaatctactgtgggca	10	7	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	12126594	12126594	C	G	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	silent	c.366	p.L122	0.998	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	82	0	0	36	21	36.84	-	-	-	G	12126594	C	G	12126594	2	3	677	1	0	0	0	0	0	0	0	1	4536	813	29	2		2	DHTKD1	10	12126594	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	55167	12126594	123408153	366	58432										
FRMD4A	0	genome.wustl.edu	37	chr10	13696452	13696452	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggatgtggtgggggctgcttGggggggtggctccaatttca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	13696452	13696452	G	-	DEL	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	frame_shift_del	c.3014	p.P1005fs	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	84	0	0	28	7	20	-	-	-	-	13696452	G	-	13696452	7	5	677	1	0	1	0	1	0	0	0	0	6100	1348	47	0	113	0	FRMD4A	10	13696452	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	1569858	13696452	121838295	367	58433										
ARMC3	0	genome.wustl.edu	37	chr10	23287250	23287250	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catcatcagcccactgcgttCtgcaaacacagtcgtgcaga	8	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	23287250	23287250	C	T	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	missense	c.1349	p.S450F	0.205	superfamily_ARM-type_fold	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	71	0	0	25	39	60.94	-	-	-	T	23287250	C	T	23287250	3	4	677	1	0	0	0	0	1	0	0	0	956	913	32	2	1387	2	ARMC3	10	23287250	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9590798	23287250	112247497	368	58434										
ARHGAP21	0	genome.wustl.edu	37	chr10	24873956	24873956	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgtgggttcctgtttttcGgattcgcctctggtgggtgt	14	8	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	24873956	24873956	G	A	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	silent	c.5262	p.S1754	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	57	0	0	26	24	48	-	-	-	A	24873956	G	A	24873956	2	1	677	1	0	0	0	0	0	0	0	1	873	1103	39	1		1	ARHGAP21	10	24873956	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1586706	24873956	110660791	369	58435										
ARHGAP12	0	genome.wustl.edu	37	chr10	32197425	32197425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgttccttgaacagatgacGatggctttccgaaacttgaa	9	9	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	32197425	32197425	G	A	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.359	p.S120L	0.726	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	82	0	0	32	28	46.67	-	-	-	A	32197425	G	A	32197425	3	1	677	1	0	0	0	0	1	0	0	0	867	1059	37	1	2253	1	ARHGAP12	10	32197425	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7323469	32197425	103337322	370	58436										
RET	0	genome.wustl.edu	37	chr10	43615122	43615122	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	accacccggatgagcgggccCtcaccatgggcgacctcatc	11	17	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	43615122	43615122	C	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.2536	p.L846I	0.990	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	22	0	0	6	8	57.14	-	-	-	A	43615122	C	A	43615122	3	1	677	1	0	0	0	0	1	0	0	0	13318	681	24	4	2590	4	RET	10	43615122	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	11417697	43615122	91919625	371	58437										
AGAP7	0	genome.wustl.edu	37	chr10	51465078	51465078	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccacttaggattctgggtctCacagtccacacagtgggcgt	11	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	51465078	51465078	C	T	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.1378	p.E460K	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	64	0	0	102	15	12.82	-	-	-	T	51465078	C	T	51465078	3	4	677	1	0	0	0	0	1	0	0	0	373	835	29	2	617	2	AGAP7	10	51465078	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7849956	51465078	84069669	372	58438										
A1CF	0	genome.wustl.edu	37	chr10	52587953	52587953	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggtagacagcataagatttCttacatataggattttcact	7	6	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	52587953	52587953	C	A	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	missense	c.707	p.R236I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	181	1	0.55	58	76	56.72	-	-	-	A	52587953	C	A	52587953	3	1	677	1	0	0	0	0	1	0	0	0	2	913	32	2	1105	2	A1CF	10	52587953	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1122875	52587953	82946794	373	58439										
BICC1	0	genome.wustl.edu	37	chr10	60549085	60549085	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaattcttcaaccggttcctGatcctaattccccctctatt	4	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	60549085	60549085	G	A	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.664	p.D222N	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	116	0	0	44	49	52.69	-	-	-	A	60549085	G	A	60549085	3	1	677	1	0	0	0	0	1	0	0	0	1432	1290	45	2	690	2	BICC1	10	60549085	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7961132	60549085	74985662	374	58440										
FAM13C	0	genome.wustl.edu	37	chr10	61115683	61115683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagtctggtcttcatgtagaGagactggatcttcgtcacac	10	10	5	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	61115683	61115683	G	A	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.83	p.S28F	0.989	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	87	0	0	23	17	42.5	-	-	-	A	61115683	G	A	61115683	3	1	677	1	0	0	0	0	1	0	0	0	5494	942	33	2	1726	2	FAM13C	10	61115683	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	566598	61115683	74419064	375	58441										
JMJD1C	0	genome.wustl.edu	37	chr10	65140109	65140109	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actgaatctgtttgctctttGatccctgagtctggctaggg	11	9	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	65140109	65140109	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.302	p.S101L	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	110	0	0	48	32	40	-	-	-	A	65140109	G	A	65140109	3	1	677	1	0	0	0	0	1	0	0	0	8004	1294	45	2	7420	2	JMJD1C	10	65140109	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4024426	65140109	70394638	376	58442										
PTEN	0	genome.wustl.edu	37	chr10	89692886	89692886	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcatgttgcagcaattcacTgtaaagctggaaagggacga	11	7	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	89692886	89692886	T	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.370	p.C124G	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	104	0	0	61	72	54.14	-	-	-	G	89692886	T	G	89692886	3	3	677	1	0	0	0	0	1	0	0	0	12818	1580	55	5	388	5	PTEN	10	89692886	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	24552777	89692886	45841861	377	58443										
KIF11	0	genome.wustl.edu	37	chr10	94388635	94388635	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgaaaaaattggtgctgttGaggaggagctgaatagggta	15	2	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	94388635	94388635	G	C	SNP	KIF11	ENST00000260731	human	ensembl	69_37n	1	known	missense	c.1288	p.E430Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160	73	0	0	32	29	47.54	-	-	-	C	94388635	G	C	94388635	3	2	677	1	0	0	0	0	1	0	0	0	8324	1291	45	2	1330	2	KIF11	10	94388635	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4695749	94388635	41146112	378	58444										
CHST15	0	genome.wustl.edu	37	chr10	125804130	125804130	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtccaccagtgtggctccttGatggcggagaacttgacctc	12	12	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	125804130	125804130	G	A	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	silent	c.852	p.I284	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	33	0	0	7	10	58.82	-	-	-	A	125804130	G	A	125804130	2	1	677	1	0	0	0	0	0	0	0	1	3432	1280	45	2		2	CHST15	10	125804130	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	31415495	125804130	9730617	379	58445										
TUBGCP2	0	genome.wustl.edu	37	chr10	135096600	135096600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acctgcatgcagttggtgaaCatgacgcacacagacatgag	11	10	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	10	135096600	135096600	C	T	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	missense	c.2355	p.M785I	1.000	NULL	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	103	0	0	28	24	46.15	-	-	-	T	135096600	C	T	135096600	3	4	677	1	0	0	0	0	1	0	0	0	16863	478	17	4	453	4	TUBGCP2	10	135096600	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9292470	135096600	438147	380	58446										
MUC2	0	genome.wustl.edu	37	chr11	1093500	1093500	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acggtactcatcaccaccacCactacgatgaccccaacccc	4	20	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	1093500	1093500	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	silent	c.5319	p.T1773	0.599	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	316	0	0	152	41	21.24	-	-	-	T	1093500	C	T	1093500	2	4	677	1	0	0	0	0	0	0	0	1	10047	581	21	4		4	MUC2	11	1093500	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		1093500	133913016	381	58447										
MUC2	0	genome.wustl.edu	37	chr11	1093642	1093642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacccatcagcaccaccactAcggtgaccccaaccccaaca	4	20	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	1093642	1093642	A	G	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.5461	p.T1821A	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	303	0	0	96	47	32.87	-	-	-	G	1093642	A	G	1093642	3	3	677	1	0	0	0	0	1	0	0	0	10047	391	14	5	5579	5	MUC2	11	1093642	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	142	1093642	133912874	382	58448										
BRSK2	0	genome.wustl.edu	37	chr11	1462075	1462075	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcgactacctggtgaagaaGgggaggctgacgcctaagga							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	1462075	1462075	G	-	DEL	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	frame_shift_del	c.468	p.R158fs	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	36	0	0	15	15	48.39	-	-	-	-	1462075	G	-	1462075	7	5	677	1	0	1	0	1	0	0	0	0	1532	991	35	0	344	0	BRSK2	11	1462075	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	368433	1462075	133544441	383	58449										
TNNT3	0	genome.wustl.edu	37	chr11	1955029	1955030	+	In_Frame_Ins	INS	-	-	AGG													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccactttgaagcccggaagaINSaggaggaggaggagctggtc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	1955029	1955030	-	AGG	INS	TNNT3	ENST00000397301	human	ensembl	69_37n	1	known	in_frame_ins	c.283_284	p.99in_frame_insE	1.000:1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT3	HGNC	ENSG00000130595	75	0	0	20	14	41.18	-	-	-	AGG	1955030	-	AGG	1955029	7	5	677	1	0	1	1	0	0	0	0	0	16427	247	9	0	325	0	TNNT3	11	1955029	In_Frame_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	492954	1955029	133051487	384	58450										
CNGA4	0	genome.wustl.edu	37	chr11	6260939	6260939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcttccccgacttgcagcacGgttatctggtggcctggttg	13	12	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	6260939	6260939	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	1	known	missense	c.190	p.G64S	0.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	112	0	0	28	26	48.15	-	-	-	A	6260939	G	A	6260939	3	1	677	1	0	0	0	0	1	0	0	0	3629	1116	39	1	200	1	CNGA4	11	6260939	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4305910	6260939	128745577	385	58451										
TRIM3	0	genome.wustl.edu	37	chr11	6477399	6477399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attcacctttctcccttccaCgactgcctgtgggaagggac	9	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	6477399	6477399	C	T	SNP	TRIM3	ENST00000345851	human	ensembl	69_37n	-1	known	missense	c.1436	p.R479H	0.992	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171	97	0	0	69	9	11.54	-	-	-	T	6477399	C	T	6477399	3	4	677	1	0	0	0	0	1	0	0	0	16600	536	19	1	822	1	TRIM3	11	6477399	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	216460	6477399	128529117	386	58452										
DCHS1	0	genome.wustl.edu	37	chr11	6661920	6661920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcagcagccccgtgtgtgCgtcgatggagaagggtccat	15	11	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	6661920	6661920	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.925	p.A309T	0.149	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	61	0	0	25	12	32.43	-	-	-	T	6661920	C	T	6661920	3	4	677	1	0	0	0	0	1	0	0	0	4318	768	27	1	9051	1	DCHS1	11	6661920	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	184521	6661920	128344596	387	58453										
STK33	0	genome.wustl.edu	37	chr11	8483385	8483385	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aatacttgttccagatgtatGatgtgttcatgttttacact	7	6	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	8483385	8483385	G	A	SNP	STK33	ENST00000315204	human	ensembl	69_37n	-1	known	silent	c.525	p.I175	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK33	HGNC	ENSG00000130413	234	0	0	88	84	48.84	-	-	-	A	8483385	G	A	8483385	2	1	677	1	0	0	0	0	0	0	0	1	15391	1280	45	2		2	STK33	11	8483385	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1821465	8483385	126523131	388	58454										
NAV2	0	genome.wustl.edu	37	chr11	19955610	19955610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagaagccccagctggacgGcagacactccagttcctctt	10	15	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	19955610	19955610	G	A	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.1889	p.G630D	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	44	0	0	10	10	50	-	-	-	A	19955610	G	A	19955610	3	1	677	1	0	0	0	0	1	0	0	0	10256	1203	42	4	1925	4	NAV2	11	19955610	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11472225	19955610	115050906	389	58455										
HIPK3	0	genome.wustl.edu	37	chr11	33308561	33308561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaaatacttacgaagtccttGattttcttggtcgaggcacg	9	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	33308561	33308561	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	missense	c.601	p.D201N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	34	0	0	12	18	60	-	-	-	A	33308561	G	A	33308561	3	1	677	1	0	0	0	0	1	0	0	0	7169	1290	45	2	603	2	HIPK3	11	33308561	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	13352951	33308561	101697955	390	58456										
CELF1	0	genome.wustl.edu	37	chr11	47498973	47498973	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttctgtaactgcattgcattCaaccctacaacatccaaagc	4	13	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	47498973	47498973	C	T	SNP	CELF1	ENST00000532048	human	ensembl	69_37n	-1	known	silent	c.846	p.L282	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187	58	0	0	43	6	12.24	-	-	-	T	47498973	C	T	47498973	2	4	677	1	0	0	0	0	0	0	0	1	3244	825	29	2		2	CELF1	11	47498973	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14190412	47498973	87507543	391	58457										
FAM111A	0	genome.wustl.edu	37	chr11	58919838	58919838	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcaaggatggcagatttcttTcctttctggagaatgatgat	11	6	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	58919838	58919838	T	C	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	missense	c.697	p.S233P	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	80	0	0	36	44	55	-	-	-	C	58919838	T	C	58919838	3	2	677	1	0	0	0	0	1	0	0	0	5439	1783	62	5	703	5	FAM111A	11	58919838	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	11420865	58919838	76086678	392	58458										
DTX4	0	genome.wustl.edu	37	chr11	58972164	58972164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctaggttctgaagctgctgCtcgtggcctgggatcgccgc	14	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	58972164	58972164	C	T	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	1	known	missense	c.1642	p.L548F	1.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	122	0	0	47	49	51.04	-	-	-	T	58972164	C	T	58972164	3	4	677	1	0	0	0	0	1	0	0	0	4832	797	28	4	1676	4	DTX4	11	58972164	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	52326	58972164	76034352	393	58459										
OR4D10	0	genome.wustl.edu	37	chr11	59245060	59245060	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtcactgttacctgtgaatCtcgccttcacacgcccatgt	8	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	59245060	59245060	C	A	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	missense	c.158	p.S53Y	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	96	0	0	91	24	20.87	-	-	-	A	59245060	C	A	59245060	3	1	677	1	0	0	0	0	1	0	0	0	11127	913	32	2	160	2	OR4D10	11	59245060	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	272896	59245060	75761456	394	58460										
PYGM	0	genome.wustl.edu	37	chr11	64525980	64525980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctccagctcctccatgtccAggcccagctggaggagtgag	12	15	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	64525980	64525980	A	G	SNP	PYGM	ENST00000164139	human	ensembl	69_37n	-1	known	missense	c.353	p.L118P	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	47	0	0	18	4	18.18	-	-	-	G	64525980	A	G	64525980	3	3	677	1	0	0	0	0	1	0	0	0	12945	188	7	5	2247	5	PYGM	11	64525980	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	5280920	64525980	70480536	395	58461										
MAP4K2	0	genome.wustl.edu	37	chr11	64567840	64567840	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcttggtcagggccagtttGagaaagtggtggaaattctg	14	5	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	64567840	64567840	G	C	SNP	MAP4K2	ENST00000294066	human	ensembl	69_37n	-1	known	silent	c.750	p.L250	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067	43	0	0	9	15	62.5	-	-	-	C	64567840	G	C	64567840	2	2	677	1	0	0	0	0	0	0	0	1	9331	1277	45	2		2	MAP4K2	11	64567840	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	41860	64567840	70438676	396	58462										
CAPN1	0	genome.wustl.edu	37	chr11	64973987	64973987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacttcttcctggccaatgcGtctcgggcgcgctcagagca	12	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	64973987	64973987	G	A	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	silent	c.1407	p.A469	0.005	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	41	0	0	7	11	61.11	-	-	-	A	64973987	G	A	64973987	2	1	677	1	0	0	0	0	0	0	0	1	2647	1132	40	1		1	CAPN1	11	64973987	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	406147	64973987	70032529	397	58463										
PACS1	0	genome.wustl.edu	37	chr11	66009006	66009006	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagagggacgccagctcgaaGaacaccctcaagagtgtctt	11	11	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	66009006	66009006	G	C	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	missense	c.2538	p.K846N	1.000	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	49	0	0	9	4	30.77	-	-	-	C	66009006	G	C	66009006	3	2	677	1	0	0	0	0	1	0	0	0	11445	933	33	2	2624	2	PACS1	11	66009006	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1035019	66009006	68997510	398	58464										
MRPL11	0	genome.wustl.edu	37	chr11	66204351	66204351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatccttcatggagatctttCcatttcttagaacatttgca	6	9	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	66204351	66204351	C	A	SNP	MRPL11	ENST00000329819	human	ensembl	69_37n	-1	known	missense	c.503	p.G168V	0.001	NULL	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	-	no_errors	MRPL11	HGNC	ENSG00000174547	129	0	0	39	41	51.25	-	-	-	A	66204351	C	A	66204351	3	1	677	1	0	0	0	0	1	0	0	0	9848	855	30	2	156	2	MRPL11	11	66204351	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	195345	66204351	68802165	399	58465										
ACY3	0	genome.wustl.edu	37	chr11	67412606	67412606	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccgcagcacaccctgtggctGggggcccagctccagacctg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	67412606	67412606	G	-	DEL	ACY3	ENST00000255082	human	ensembl	69_37n	-1	known	frame_shift_del	c.544	p.Q182fs	1.000	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ACY3	HGNC	ENSG00000132744	47	0	0	14	6	30	-	-	-	-	67412606	G	-	67412606	7	5	677	1	0	1	0	1	0	0	0	0	227	1357	47	0	427	0	ACY3	11	67412606	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	1208255	67412606	67593910	400	58466										
CHKA	0	genome.wustl.edu	37	chr11	67833265	67833265	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctcctacctgttgtttcttGgtgggatacttccggatgtt	10	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	67833265	67833265	G	C	SNP	CHKA	ENST00000265689	human	ensembl	69_37n	-1	known	silent	c.1113	p.T371	0.960	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKA	HGNC	ENSG00000110721	137	0	0	48	64	57.14	-	-	-	C	67833265	G	C	67833265	2	2	677	1	0	0	0	0	0	0	0	1	3376	1335	47	4		4	CHKA	11	67833265	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	420659	67833265	67173251	401	58467										
MRE11A	0	genome.wustl.edu	37	chr11	94189498	94189498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgtctggtttctctgaaacGacgtacctagatcataacag	8	9	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	94189498	94189498	G	A	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.1507	p.R503C	0.980	pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	196	0	0	93	117	55.71	-	-	-	A	94189498	G	A	94189498	3	1	677	1	0	0	0	0	1	0	0	0	9831	1058	37	1	647	1	MRE11A	11	94189498	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	26356233	94189498	40817018	402	58468										
YAP1	0	genome.wustl.edu	37	chr11	102076658	102076658	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcagtcagagtgctccagtGaaacagccaccacccctggc	9	15	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	102076658	102076658	G	A	SNP	YAP1	ENST00000282441	human	ensembl	69_37n	1	known	silent	c.837	p.V279	0.995	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	YAP1	HGNC	ENSG00000137693	30	0	0	10	14	58.33	-	-	-	A	102076658	G	A	102076658	2	1	677	1	0	0	0	0	0	0	0	1	17563	1277	45	2		2	YAP1	11	102076658	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7887160	102076658	32929858	403	58469										
DYNC2H1	0	genome.wustl.edu	37	chr11	103004288	103004288	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttattgtaccatagaattCaaaagcaggaagtggaggga	11	4	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	103004288	103004288	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	nonsense	c.1958	p.S653*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	53	0	0	19	27	58.7	-	-	-	G	103004288	C	G	103004288	4	3	677	1	0	0	0	0	0	1	0	0	4881	838	29	2	2012	2	DYNC2H1	11	103004288	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	927630	103004288	32002228	404	58470										
CASP1	0	genome.wustl.edu	37	chr11	104905104	104905104	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttctccatctcttccttgttCagcacccttgtctgtaataa	4	13	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	104905104	104905104	C	T	SNP	CASP1	ENST00000436863	human	ensembl	69_37n	-1	known	silent	c.105	p.L35	0.992	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752	291	0	0	129	162	55.67	-	-	-	T	104905104	C	T	104905104	2	4	677	1	0	0	0	0	0	0	0	1	2693	813	29	2		2	CASP1	11	104905104	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1900816	104905104	30101412	405	58471										
CWF19L2	0	genome.wustl.edu	37	chr11	107219706	107219706	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catccaacaaagtagctgctCtatggtgctgcaaagggact	10	10	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	107219706	107219706	C	G	SNP	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	missense	c.2159	p.R720T	0.970	pfam_Cwf19-like_C_dom-1,superfamily_HIT-like	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	86	0	0	34	31	47.69	-	-	-	G	107219706	C	G	107219706	3	3	677	1	0	0	0	0	1	0	0	0	4103	913	32	2	545	2	CWF19L2	11	107219706	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2314602	107219706	27786810	406	58472										
NCAM1	0	genome.wustl.edu	37	chr11	113076329	113076329	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtgtgtgatgtggtcagctCcctcccaccaaccatcatct	8	14	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	113076329	113076329	C	G	SNP	NCAM1	ENST00000316851	human	ensembl	69_37n	1	known	missense	c.401	p.S134C	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,prints_Neural_cell_adh,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NCAM1	HGNC	ENSG00000149294	115	0	0	42	37	46.84	-	-	-	G	113076329	C	G	113076329	3	3	677	1	0	0	0	0	1	0	0	0	10274	855	30	2	446	2	NCAM1	11	113076329	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5856623	113076329	21930187	407	58473										
BUD13	0	genome.wustl.edu	37	chr11	116633763	116633763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtgtctgaggagtcatgaCggatcctcctgggaggagat	15	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	116633763	116633763	C	T	SNP	BUD13	ENST00000260210	human	ensembl	69_37n	-1	known	missense	c.542	p.R181H	0.959	NULL	pfam_Bud13	-	no_errors	BUD13	HGNC	ENSG00000137656	35	0	0	8	6	42.86	-	-	-	T	116633763	C	T	116633763	3	4	677	1	0	0	0	0	1	0	0	0	1582	536	19	1	1345	1	BUD13	11	116633763	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3557434	116633763	18372753	408	58474										
APOA1	0	genome.wustl.edu	37	chr11	116706998	116706998	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acctcctccagatccttgctCatctcctgcctcaggccctc	5	20	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	116706998	116706998	C	G	SNP	APOA1	ENST00000236850	human	ensembl	69_37n	-1	known	missense	c.330	p.M110I	0.956	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137	83	0	0	13	23	63.89	-	-	-	G	116706998	C	G	116706998	3	3	677	1	0	0	0	0	1	0	0	0	782	826	29	2	477	2	APOA1	11	116706998	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	73235	116706998	18299518	409	58475										
ABCG4	0	genome.wustl.edu	37	chr11	119027683	119027683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgagaagaagagcagccctGagaagaacgaggtccctgcc	13	11	0	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	119027683	119027683	G	A	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.1027	p.E343K	1.000	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	75	0	0	22	25	53.19	-	-	-	A	119027683	G	A	119027683	3	1	677	1	0	0	0	0	1	0	0	0	70	1291	45	2	1057	2	ABCG4	11	119027683	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2320685	119027683	15978833	410	58476										
ACRV1	0	genome.wustl.edu	37	chr11	125547821	125547821	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgttcacctgaaggctgttCatctgaaggctgttcacctg	10	10	4	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	125547821	125547821	C	A	SNP	ACRV1	ENST00000533904	human	ensembl	69_37n	-1	known	nonsense	c.424	p.E142*	0.999	NULL	NULL	-	no_errors	ACRV1	HGNC	ENSG00000134940	205	0	0	92	127	57.99	-	-	-	A	125547821	C	A	125547821	4	1	677	1	0	0	0	0	0	1	0	0	172	835	29	2	385	2	ACRV1	11	125547821	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6520138	125547821	9458695	411	58477										
NCAPD3	0	genome.wustl.edu	37	chr11	134038496	134038496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caatgaaaacagccgcttctCtctgtggcagaacgggacaa	10	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	11	134038496	134038496	C	G	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	missense	c.3241	p.E1081Q	1.000	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	134	0	0	57	73	56.15	-	-	-	G	134038496	C	G	134038496	3	3	677	1	0	0	0	0	1	0	0	0	10278	927	32	2	1295	2	NCAPD3	11	134038496	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8490675	134038496	968020	412	58478										
KCNA6	0	genome.wustl.edu	37	chr12	4919268	4919268	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggtccgtgggccggagggaGagcaacaggatgcgggagac	20	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	4919268	4919268	G	C	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	missense	c.61	p.E21Q	0.745	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	13	0	0	11	5	31.25	-	-	-	C	4919268	G	C	4919268	3	2	677	1	0	0	0	0	1	0	0	0	8061	943	33	2	63	2	KCNA6	12	4919268	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		4919268	128932627	413	58479										
KCNA6	0	genome.wustl.edu	37	chr12	4919634	4919634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aggacgagggctgcctgcccGaaggtggcgaggacgagaag	19	9	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	4919634	4919634	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	missense	c.427	p.E143K	0.673	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	35	0	0	11	11	50	-	-	-	A	4919634	G	A	4919634	3	1	677	1	0	0	0	0	1	0	0	0	8061	1059	37	1	429	1	KCNA6	12	4919634	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	366	4919634	128932261	414	58480										
IFFO1	0	genome.wustl.edu	37	chr12	6658963	6658963	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcgcagttgcgctgctgagCcacatcgcagagcttggcgg	14	13	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	6658963	6658963	C	T	SNP	IFFO1	ENST00000416019	human	ensembl	69_37n	-1	novel	nonsense	c.225	p.W75*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IFFO1	HGNC	ENSG00000010295	84	0	0	30	24	44.44	-	-	-	T	6658963	C	T	6658963	4	4	677	1	0	0	0	0	0	1	0	0	7564	739	26	4	689	4	IFFO1	12	6658963	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1739329	6658963	127192932	415	58481										
NOP2	0	genome.wustl.edu	37	chr12	6672330	6672330	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcattagcttctaagaactCcaccagctgcggggcaagac	9	13	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	6672330	6672330	C	T	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	missense	c.895	p.E299K	0.998	prints_RCMT_NOP2	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	60	0	0	30	19	38.78	-	-	-	T	6672330	C	T	6672330	3	4	677	1	0	0	0	0	1	0	0	0	10610	864	30	2	1575	2	NOP2	12	6672330	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	13367	6672330	127179565	416	58482										
ACRBP	0	genome.wustl.edu	37	chr12	6748131	6748131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtgctcaccttccgattgcGgtttctcatcagacactgct	9	13	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	6748131	6748131	G	A	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	missense	c.1498	p.R500C	0.813	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	86	0	0	68	17	20	-	-	-	A	6748131	G	A	6748131	3	1	677	1	0	0	0	0	1	0	0	0	170	1116	39	1	141	1	ACRBP	12	6748131	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	75801	6748131	127103764	417	58483										
PEX5	0	genome.wustl.edu	37	chr12	7343048	7343048	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagctcgccgggcacttcacCcaggacaaggcccttcggca	11	16	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	7343048	7343048	C	A	SNP	PEX5	ENST00000434354	human	ensembl	69_37n	1	known	silent	c.75	p.T25	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197	77	0	0	31	30	49.18	-	-	-	A	7343048	C	A	7343048	2	1	677	1	0	0	0	0	0	0	0	1	11822	610	22	4		4	PEX5	12	7343048	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	594917	7343048	126508847	418	58484										
NECAP1	0	genome.wustl.edu	37	chr12	8234951	8234951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acgtcagcgtctaccggattCcgccccgggcctccaaccgc	10	19	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	8234951	8234951	C	T	SNP	NECAP1	ENST00000339754	human	ensembl	69_37n	1	known	missense	c.67	p.P23S	1.000	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818	36	0	0	10	13	56.52	-	-	-	T	8234951	C	T	8234951	3	4	677	1	0	0	0	0	1	0	0	0	10379	855	30	2	69	2	NECAP1	12	8234951	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	891903	8234951	125616944	419	58485										
ITPR2	0	genome.wustl.edu	37	chr12	26750047	26750047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcattgtaaaatatcagcacGtcttcacccccatttatcaa	3	12	5	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	26750047	26750047	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.4023	p.D1341	0.996	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	81	0	0	52	24	31.58	-	-	-	A	26750047	G	A	26750047	2	1	677	1	0	0	0	0	0	0	0	1	7975	1136	40	1		1	ITPR2	12	26750047	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	18515096	26750047	107101848	420	58486										
TSPAN11	0	genome.wustl.edu	37	chr12	31135536	31135536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acatcctgttgcgggaggccGagggccgccaggtgcccgac	16	14	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	31135536	31135536	G	A	SNP	TSPAN11	ENST00000261177	human	ensembl	69_37n	1	known	missense	c.526	p.E176K	0.980	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900	37	0	0	12	7	36.84	-	-	-	A	31135536	G	A	31135536	3	1	677	1	0	0	0	0	1	0	0	0	16731	1059	37	1	544	1	TSPAN11	12	31135536	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4385489	31135536	102716359	421	58487										
H3F3C	0	genome.wustl.edu	37	chr12	31944956	31944956	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgataacgacgaatctctcGaagcgccacggtcccaggcc	10	15	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	31944956	31944956	G	A	SNP	H3F3C	ENST00000340398	human	ensembl	69_37n	-1	known	nonsense	c.145	p.R49*	0.947	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3C	HGNC	ENSG00000188375	66	0	0	46	25	35.21	-	-	-	A	31944956	G	A	31944956	4	1	677	1	0	0	0	0	0	1	0	0	6986	1066	37	1	266	1	H3F3C	12	31944956	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	809420	31944956	101906939	422	58488										
ALG10	0	genome.wustl.edu	37	chr12	34176968	34176968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgatcaaacctgccatttgGatctttggatggtctgaaca	10	8	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	34176968	34176968	G	C	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	1	known	missense	c.243	p.W81C	1.000	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	302	0	0	279	130	31.71	-	-	-	C	34176968	G	C	34176968	3	2	677	1	0	0	0	0	1	0	0	0	511	1183	41	2	249	2	ALG10	12	34176968	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2232012	34176968	99674927	423	58489										
PRICKLE1	0	genome.wustl.edu	37	chr12	42854279	42854279	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagatgtactggcttctcttCaggcaggattttctctggac	10	10	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	42854279	42854279	C	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	69_37n	-1	known	nonsense	c.1828	p.E610*	0.024	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174	91	0	0	69	42	37.84	-	-	-	A	42854279	C	A	42854279	4	1	677	1	0	0	0	0	0	1	0	0	12567	835	29	2	671	2	PRICKLE1	12	42854279	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8677311	42854279	90997616	424	58490										
CCNT1	0	genome.wustl.edu	37	chr12	49087736	49087736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaaaggagattctgggcagCatatgcatattgtgacttca	11	6	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	49087736	49087736	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.1261	p.A421T	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	116	0	0	111	27	19.57	-	-	-	T	49087736	C	T	49087736	3	4	677	1	0	0	0	0	1	0	0	0	2963	710	25	4	923	4	CCNT1	12	49087736	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6233457	49087736	84764159	425	58491										
DDX23	0	genome.wustl.edu	37	chr12	49230685	49230685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgatcactcactcctcctgCtccttttcttccagggttcg	6	15	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	49230685	49230685	C	T	SNP	DDX23	ENST00000308025	human	ensembl	69_37n	-1	known	silent	c.1002	p.E334	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	140	0	0	78	45	36.59	-	-	-	T	49230685	C	T	49230685	2	4	677	1	0	0	0	0	0	0	0	1	4381	796	28	4		4	DDX23	12	49230685	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	142949	49230685	84621210	426	58492										
GRASP	0	genome.wustl.edu	37	chr12	52407499	52407499	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcgccagcgtcaatggcctGaatgtggaaggcatccggca	13	11	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	52407499	52407499	G	C	SNP	GRASP	ENST00000293662	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.743	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRASP	HGNC	ENSG00000161835	68	0	0	41	21	33.87	-	-	-	C	52407499	G	C	52407499	2	2	677	1	0	0	0	0	0	0	0	1	6806	1277	45	2		2	GRASP	12	52407499	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3176814	52407499	81444396	427	58493										
KRT6A	0	genome.wustl.edu	37	chr12	52881589	52881589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctccaacagagctgaggccaCccccaatggctctgccactg	9	17	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	52881589	52881589	C	T	SNP	KRT6A	ENST00000330722	human	ensembl	69_37n	-1	known	missense	c.1610	p.G537D	0.683	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420	156	0	0	84	29	25.66	-	-	-	T	52881589	C	T	52881589	3	4	677	1	0	0	0	0	1	0	0	0	8533	507	18	4	88	4	KRT6A	12	52881589	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	474090	52881589	80970306	428	58494										
KRT2	0	genome.wustl.edu	37	chr12	53041591	53041591	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgatctctatcttgatctCtttcaggctgtctccatgtc	7	12	5	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	53041591	53041591	C	G	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	missense	c.1171	p.E391Q	0.000	pfam_F,superfamily_Prefoldin,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	73	0	0	65	34	34.34	-	-	-	G	53041591	C	G	53041591	3	3	677	1	0	0	0	0	1	0	0	0	8510	922	32	2	764	2	KRT2	12	53041591	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	160002	53041591	80810304	429	58495										
KRT18	0	genome.wustl.edu	37	chr12	53345518	53345518	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgtccccatcctgcagattGaggagagcaccacagtggtc	11	13	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	53345518	53345518	G	C	SNP	KRT18	ENST00000388835	human	ensembl	69_37n	1	known	missense	c.826	p.E276Q	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	69	0	0	39	29	42.65	-	-	-	C	53345518	G	C	53345518	3	2	677	1	0	0	0	0	1	0	0	0	8508	1291	45	2	844	2	KRT18	12	53345518	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	303927	53345518	80506377	430	58496										
MYL6B	0	genome.wustl.edu	37	chr12	56547854	56547854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcagaaaacccaggagcctcCagtcgatctctccaaagtgg	9	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	56547854	56547854	C	T	SNP	MYL6B	ENST00000207437	human	ensembl	69_37n	1	known	missense	c.152	p.P51L	0.976	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL6B	HGNC	ENSG00000196465	96	0	0	39	20	33.9	-	-	-	T	56547854	C	T	56547854	3	4	677	1	0	0	0	0	1	0	0	0	10124	594	21	4	154	4	MYL6B	12	56547854	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3202336	56547854	77304041	431	58497										
TIMELESS	0	genome.wustl.edu	37	chr12	56816665	56816665	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gccatagccctcagtcatctCtcgaaccacagctgtgttct	7	15	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	56816665	56816665	C	G	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	missense	c.2404	p.E802Q	1.000	pfam_TIMELESS_C	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	57	0	0	53	18	25.35	-	-	-	G	56816665	C	G	56816665	3	3	677	1	0	0	0	0	1	0	0	0	15999	922	32	2	1266	2	TIMELESS	12	56816665	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	268811	56816665	77035230	432	58498										
LRP1	0	genome.wustl.edu	37	chr12	57593676	57593677	+	Frame_Shift_Ins	INS	-	-	A													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagtgcccaatcacccctgcINSaaggtcaacaatggtggctg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	57593676	57593677	-	A	INS	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	frame_shift_ins	c.9882_9883	p.V3295fs	1.000:1.000	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	63	0	0	38	6	13.64	-	-	-	A	57593677	-	A	57593676	7	5	677	1	0	1	1	0	0	0	0	0	9017	718	25	0	10128	0	LRP1	12	57593676	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	777011	57593676	76258219	433	58499										
LRP1	0	genome.wustl.edu	37	chr12	57594568	57594568	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctgcgatggcgacaatgacTgccaggacaacagtgacgag	13	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	57594568	57594568	T	C	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.10195	p.C3399R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	30	0	0	20	5	20	-	-	-	C	57594568	T	C	57594568	3	2	677	1	0	0	0	0	1	0	0	0	9017	1580	55	5	10449	5	LRP1	12	57594568	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	892	57594568	76257327	434	58500										
DPY19L2	0	genome.wustl.edu	37	chr12	63963127	63963127	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aataaactatttttgtccgaGccctttaaatttaaacaata	3	7	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	63963127	63963127	G	C	SNP	DPY19L2	ENST00000324472	human	ensembl	69_37n	-1	known	missense	c.2003	p.A668G	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L2	HGNC	ENSG00000177990	101	0	0	84	40	32.26	-	-	-	C	63963127	G	C	63963127	3	2	677	1	0	0	0	0	1	0	0	0	4776	971	34	4	281	4	DPY19L2	12	63963127	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6368559	63963127	69888768	435	58501										
RAP1B	0	genome.wustl.edu	37	chr12	69042554	69042554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcaggaggcgttggaaagtCtgctttggtaagtcattctt	12	7	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	69042554	69042554	C	G	SNP	RAP1B	ENST00000250559	human	ensembl	69_37n	1	known	missense	c.50	p.S17C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1B	HGNC	ENSG00000127314	126	0	0	144	58	28.57	-	-	-	G	69042554	C	G	69042554	3	3	677	1	0	0	0	0	1	0	0	0	13119	913	32	2	52	2	RAP1B	12	69042554	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5079427	69042554	64809341	436	58502										
TMEM19	0	genome.wustl.edu	37	chr12	72090223	72090223	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgtttctttcagggctagtCgttggatttatcctaaccat	8	8	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	72090223	72090223	C	T	SNP	TMEM19	ENST00000266673	human	ensembl	69_37n	1	known	silent	c.252	p.V84	0.985	pfam_DUF92_TMEM19	pfam_DUF92_TMEM19	-	no_errors	TMEM19	HGNC	ENSG00000139291	148	1	0.67	110	46	29.49	-	-	-	T	72090223	C	T	72090223	2	4	677	1	0	0	0	0	0	0	0	1	16208	871	31	1		1	TMEM19	12	72090223	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3047669	72090223	61761672	437	58503										
TMEM19	0	genome.wustl.edu	37	chr12	72091271	72091271	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gttggcccagttctgagtaaAagttctccaagactgataac	9	9	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	72091271	72091271	A	G	SNP	TMEM19	ENST00000550787	human	ensembl	69_37n	1	known	missense	c.40	p.K14E	0.934	pfam_DUF92_TMEM19	pfam_DUF92_TMEM19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM19	HGNC	ENSG00000139291	88	0	0	67	44	39.64	-	-	-	G	72091271	A	G	72091271	3	3	677	1	0	0	0	0	1	0	0	0	16208	11	1	5	608	5	TMEM19	12	72091271	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1048	72091271	61760624	438	58504										
KCNC2	0	genome.wustl.edu	37	chr12	75436094	75436097	+	Frame_Shift_Del	DEL	TAAG	TAAG	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgtgccttccccaagtcatTaagtaagagatctggcctcg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	TAAG	TAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	75436094	75436097	TAAG	-	DEL	KCNC2	ENST00000298972	human	ensembl	69_37n	-1	known	frame_shift_del	c.1841_1838	p.T613fs	1.000:1.000:1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	124	0	0	149	22	12.87	-	-	-	-	75436097	TAAG	-	75436094	7	5	677	1	0	1	0	1	0	0	0	0	8069	1761	61	0	4	0	KCNC2	12	75436094	Frame_Shift_Del	DEL	TAAG	TCGA-D8-A1J8-01A-11D-A13L-09	3344823	75436094	58415801	439	58505										
TMTC3	0	genome.wustl.edu	37	chr12	88566490	88566490	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atggggttctgtattttggtAgcccatggatggcagaaaat	13	5	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	88566490	88566490	A	G	SNP	TMTC3	ENST00000266712	human	ensembl	69_37n	1	known	silent	c.1167	p.V389	1.000	NULL	pfam_TPR_2,pfam_TPR-1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	155	0	0	136	62	31.31	-	-	-	G	88566490	A	G	88566490	2	3	677	1	0	0	0	0	0	0	0	1	16357	407	15	5		5	TMTC3	12	88566490	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	13130396	88566490	45285405	440	58506										
PLXNC1	0	genome.wustl.edu	37	chr12	94634314	94634314	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgaaattctctcttccatCaagccggaaagaaatgaagg	8	9	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	94634314	94634314	C	G	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	nonsense	c.2174	p.S725*	0.973	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	185	0	0	132	71	34.98	-	-	-	G	94634314	C	G	94634314	4	3	677	1	0	0	0	0	0	1	0	0	12200	838	29	2	2216	2	PLXNC1	12	94634314	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6067824	94634314	39217581	441	58507										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100451840	100451840	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgatttaagtgttctaactGggggggtctcttctttactg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	100451840	100451840	G	-	DEL	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	frame_shift_del	c.3215	p.P1072fs	0.844	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	32	0	0	40	13	24.53	-	-	-	-	100451840	G	-	100451840	7	5	677	1	0	1	0	1	0	0	0	0	17066	1348	47	0	1211	0	UHRF1BP1L	12	100451840	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	5817526	100451840	33400055	442	58508										
HCFC2	0	genome.wustl.edu	37	chr12	104458465	104458465	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcatctttggagggggaaatGagggcatcgcggatgagctg	17	6	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	104458465	104458465	G	C	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.127	p.E43Q	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	36	0	0	3	4	57.14	-	-	-	C	104458465	G	C	104458465	3	2	677	1	0	0	0	0	1	0	0	0	7044	1291	45	2	129	2	HCFC2	12	104458465	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4006625	104458465	29393430	443	58509										
TXNRD1	0	genome.wustl.edu	37	chr12	104682791	104682791	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgtttgtgaaacagagaaaGataggcggccatggtccaac	13	7	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	104682791	104682791	G	C	SNP	TXNRD1	ENST00000429002	human	ensembl	69_37n	1	known	missense	c.387	p.K129N	0.054	superfamily_Thioredoxin-like_fold	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	69	0	0	46	8	14.81	-	-	-	C	104682791	G	C	104682791	3	2	677	1	0	0	0	0	1	0	0	0	16904	933	33	2	415	2	TXNRD1	12	104682791	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	224326	104682791	29169104	444	58510										
MED13L	0	genome.wustl.edu	37	chr12	116457647	116457649	+	In_Frame_Del	DEL	TTC	TTC	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aactcgtcttcctctttcgaTtcttctttcttttttagcac							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	116457647	116457649	TTC	-	DEL	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	in_frame_del	c.756_754	p.E252in_frame_del	0.129:0.665:0.695	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	186	0	0	149	54	26.34	-	-	-	-	116457649	TTC	-	116457647	7	5	677	1	0	1	0	1	0	0	0	0	9502	1490	52	0	5980	0	MED13L	12	116457647	In_Frame_Del	DEL	TTC	TCGA-D8-A1J8-01A-11D-A13L-09	11774856	116457647	17394248	445	58511										
VSIG10	0	genome.wustl.edu	37	chr12	118517245	118517245	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccgacagctgggactcgctCagcatttccacccccagctt	8	17	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	118517245	118517245	C	T	SNP	VSIG10	ENST00000359236	human	ensembl	69_37n	-1	known	silent	c.831	p.L277	0.990	pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG10	HGNC	ENSG00000176834	155	0	0	91	38	29.46	-	-	-	T	118517245	C	T	118517245	2	4	677	1	0	0	0	0	0	0	0	1	17320	813	29	2		2	VSIG10	12	118517245	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2059598	118517245	15334650	446	58512										
MORN3	0	genome.wustl.edu	37	chr12	122091035	122091035	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgtcacggccaaagtcgatCatcgtcccgcatttggccat	9	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	122091035	122091035	C	G	SNP	MORN3	ENST00000355329	human	ensembl	69_37n	-1	known	missense	c.594	p.M198I	1.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714	33	0	0	10	7	41.18	-	-	-	G	122091035	C	G	122091035	3	3	677	1	0	0	0	0	1	0	0	0	9781	826	29	2	136	2	MORN3	12	122091035	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3573790	122091035	11760860	447	58513										
CLIP1	0	genome.wustl.edu	37	chr12	122773065	122773065	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttctaacaactgattattGagcacagatctttcttcttc	4	9	4	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	122773065	122773065	G	C	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	silent	c.3618	p.L1206	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	150	0	0	109	47	30.13	-	-	-	C	122773065	G	C	122773065	2	2	677	1	0	0	0	0	0	0	0	1	3562	1277	45	2		2	CLIP1	12	122773065	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	682030	122773065	11078830	448	58514										
ABCB9	0	genome.wustl.edu	37	chr12	123433250	123433250	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgaccaaggagagctgccatGagaggctgaacatgaagacc	13	9	0	6			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	123433250	123433250	G	A	SNP	ABCB9	ENST00000442028	human	ensembl	69_37n	-1	known	missense	c.974	p.S325L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB9	HGNC	ENSG00000150967	58	0	0	43	29	40.28	-	-	-	A	123433250	G	A	123433250	3	1	677	1	0	0	0	0	1	0	0	0	48	1294	45	2	1358	2	ABCB9	12	123433250	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	660185	123433250	10418645	449	58515										
DNAH10	0	genome.wustl.edu	37	chr12	124398954	124398954	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgctctgcgcggctttcctCagctacgagggagccttcac	11	15	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	124398954	124398954	C	T	SNP	DNAH10	ENST00000540041	human	ensembl	69_37n	1	putative	missense	c.860	p.S287L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH10	HGNC	ENSG00000197653	48	0	0	39	15	27.78	-	-	-	T	124398954	C	T	124398954	3	4	677	1	0	0	0	0	1	0	0	0	4634	813	29	2	10315	2	DNAH10	12	124398954	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	965704	124398954	9452941	450	58516										
CCDC92	0	genome.wustl.edu	37	chr12	124421638	124421638	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccgtccctgagtgcttcctCaccaccttgcctccgttcac	6	19	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	124421638	124421638	C	G	SNP	CCDC92	ENST00000238156	human	ensembl	69_37n	-1	known	silent	c.963	p.V321	0.913	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242	52	0	0	21	11	34.38	-	-	-	G	124421638	C	G	124421638	2	3	677	1	0	0	0	0	0	0	0	1	2898	813	29	2		2	CCDC92	12	124421638	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	22684	124421638	9430257	451	58517										
TMEM132D	0	genome.wustl.edu	37	chr12	129559341	129559341	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttttggccaaatttaactttGatgtttgccgttccaacagc	7	9	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	129559341	129559341	G	C	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2379	p.I793M	0.811	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	115	0	0	128	57	30.81	-	-	-	C	129559341	G	C	129559341	3	2	677	1	0	0	0	0	1	0	0	0	16142	1280	45	2	924	2	TMEM132D	12	129559341	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5137703	129559341	4292554	452	58518										
FZD10	0	genome.wustl.edu	37	chr12	130648757	130648757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgtggccctgttccacatcCggagggtgatgaagacgggc	15	11	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	130648757	130648757	C	T	SNP	FZD10	ENST00000229030	human	ensembl	69_37n	1	known	missense	c.1270	p.R424W	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD10	HGNC	ENSG00000111432	130	0	0	100	52	33.99	-	-	-	T	130648757	C	T	130648757	3	4	677	1	0	0	0	0	1	0	0	0	6178	643	23	1	1272	1	FZD10	12	130648757	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1089416	130648757	3203138	453	58519										
EP400	0	genome.wustl.edu	37	chr12	132490757	132490757	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaagctgccgagaggatgaaTatcgggaagccaaacgccaa	12	9	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	12	132490757	132490757	T	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.3144	p.N1048K	0.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	85	0	0	51	24	32	-	-	-	A	132490757	T	A	132490757	3	1	677	1	0	0	0	0	1	0	0	0	5186	1403	49	5	3083	5	EP400	12	132490757	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1842000	132490757	1361138	454	58520										
XPO4	0	genome.wustl.edu	37	chr13	21395842	21395842	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tactttagaatagtcactcaCcacttcttccaatgcagcac	4	13	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	21395842	21395842	C	A	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	splice_site	c.1173+1	e9+1	1.000	-	-	-	no_errors	XPO4	HGNC	ENSG00000132953	117	0	0	60	52	46.43	-	-	-	A	21395842	C	A	21395842	5	1	677	1	0	0	0	0	0	0	1	0	17543	521	18	4	2341	4	XPO4	13	21395842	Splice_Site	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		21395842	93774036	455	58521										
SACS	0	genome.wustl.edu	37	chr13	23909883	23909883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggaacagacgaaatttccGaaacttttgccatttctgca	7	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	23909883	23909883	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8132	p.S2711L	1.000	superfamily_ATPase-like_ATP-bd	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	65	0	0	49	11	18.33	-	-	-	A	23909883	G	A	23909883	3	1	677	1	0	0	0	0	1	0	0	0	13890	1059	37	1	5611	1	SACS	13	23909883	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2514041	23909883	91259995	456	58522										
PARP4	0	genome.wustl.edu	37	chr13	25033251	25033251	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcatctcaatagacatagtCaaagagaagctagcaaaaat	8	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	25033251	25033251	C	G	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.2355	p.L785F	0.946	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	105	0	0	36	50	58.14	-	-	-	G	25033251	C	G	25033251	3	3	677	1	0	0	0	0	1	0	0	0	11536	825	29	2	2879	2	PARP4	13	25033251	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1123368	25033251	90136627	457	58523										
GPR12	0	genome.wustl.edu	37	chr13	27333511	27333511	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ataggtaaacgtgaccgtccTctccgaatggtacgtcagag	11	10	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	27333511	27333511	T	A	SNP	GPR12	ENST00000381436	human	ensembl	69_37n	-1	known	missense	c.454	p.R152W	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR12_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975	44	0	0	13	12	48	-	-	-	A	27333511	T	A	27333511	3	1	677	1	0	0	0	0	1	0	0	0	6685	1550	54	5	554	5	GPR12	13	27333511	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	2300260	27333511	87836367	458	58524										
POU4F1	0	genome.wustl.edu	37	chr13	79175724	79175724	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gagcgcttctcgggcgcggcGatggaagtccgcttgcgctt	16	12	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	79175724	79175724	G	A	SNP	POU4F1	ENST00000377208	human	ensembl	69_37n	-1	known	silent	c.1086	p.I362	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192	78	0	0	11	12	50	-	-	-	A	79175724	G	A	79175724	2	1	677	1	0	0	0	0	0	0	0	1	12351	1048	37	1		1	POU4F1	13	79175724	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	51842213	79175724	35994154	459	58525										
GPR180	0	genome.wustl.edu	37	chr13	95271495	95271495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggcaggctattaagaaaggCggacccatgcacatgatttt	11	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	95271495	95271495	C	T	SNP	GPR180	ENST00000376958	human	ensembl	69_37n	1	known	silent	c.597	p.G199	0.998	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	pfam_Rhodopsin-like_GPCR_TM_domain,pfam_TM_rcpt_euk	-	no_errors	GPR180	HGNC	ENSG00000152749	236	0	0	72	72	47.68	-	-	-	T	95271495	C	T	95271495	2	4	677	1	0	0	0	0	0	0	0	1	6726	755	27	1		1	GPR180	13	95271495	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	16095771	95271495	19898383	460	58526										
DOCK9	0	genome.wustl.edu	37	chr13	99508157	99508157	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgaaaagcaattaccttatCcagggaattgctcttctcac	7	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	99508157	99508157	C	A	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.3829	p.D1277Y	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	142	0	0	63	41	39.42	-	-	-	A	99508157	C	A	99508157	3	1	677	1	0	0	0	0	1	0	0	0	4729	855	30	2	2468	2	DOCK9	13	99508157	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4236662	99508157	15661721	461	58527										
KDELC1	0	genome.wustl.edu	37	chr13	103443621	103443621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctctcaccggcccatggtttCcagaacagaatcagtcaaat	7	13	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	103443621	103443621	C	T	SNP	KDELC1	ENST00000376004	human	ensembl	69_37n	-1	known	missense	c.832	p.E278K	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901	103	0	0	35	42	54.55	-	-	-	T	103443621	C	T	103443621	3	4	677	1	0	0	0	0	1	0	0	0	8171	864	30	2	700	2	KDELC1	13	103443621	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3935464	103443621	11726257	462	58528										
GRTP1	0	genome.wustl.edu	37	chr13	113980339	113980339	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcccccacagccggcagcttCgcccgcaccagctccccgag	10	22	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	113980339	113980339	C	T	SNP	GRTP1	ENST00000375430	human	ensembl	69_37n	-1	known	silent	c.630	p.A210	0.898	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	GRTP1	HGNC	ENSG00000139835	35	0	0	8	8	50	-	-	-	T	113980339	C	T	113980339	2	4	677	1	0	0	0	0	0	0	0	1	6861	871	31	1		1	GRTP1	13	113980339	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	10536718	113980339	1189539	463	58529										
GAS6	0	genome.wustl.edu	37	chr13	114541067	114541067	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caggtcctgccatcagaggaGagctcgaagccgctgtggca	14	12	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	13	114541067	114541067	G	C	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	silent	c.564	p.L188	0.002	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	53	0	0	15	7	31.82	-	-	-	C	114541067	G	C	114541067	2	2	677	1	0	0	0	0	0	0	0	1	6299	929	33	2		2	GAS6	13	114541067	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	560728	114541067	628811	464	58530										
HNRNPC	0	genome.wustl.edu	37	chr14	21680074	21680074	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttaatggcctgaaggtcatCtcctttcactttaatataaa	5	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	21680074	21680074	C	T	SNP	HNRNPC	ENST00000320084	human	ensembl	69_37n	-1	known	missense	c.571	p.D191N	1.000	superfamily_Regulat_G_prot_signal_superfam,pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	108	0	0	101	44	30.34	-	-	-	T	21680074	C	T	21680074	3	4	677	1	0	0	0	0	1	0	0	0	7313	913	32	2	361	2	HNRNPC	14	21680074	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		21680074	85669466	465	58531										
CHD8	0	genome.wustl.edu	37	chr14	21869200	21869200	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaagtggcgcgtttgttttcGtactctaggtgtgtcaatta	11	6	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	21869200	21869200	G	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	nonsense	c.4204	p.R1402*	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	174	0	0	170	53	23.77	-	-	-	A	21869200	G	A	21869200	4	1	677	1	0	0	0	0	0	1	0	0	3360	1153	40	1	3609	1	CHD8	14	21869200	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	189126	21869200	85480340	466	58532										
TOX4	0	genome.wustl.edu	37	chr14	21961177	21961177	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccattctgcagcagcctcctCcactccaggccatgcaacag	7	18	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	21961177	21961177	C	G	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	missense	c.1402	p.P468A	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	39	0	0	31	19	38	-	-	-	G	21961177	C	G	21961177	3	3	677	1	0	0	0	0	1	0	0	0	16476	855	30	2	1428	2	TOX4	14	21961177	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	91977	21961177	85388363	467	58533										
ACIN1	0	genome.wustl.edu	37	chr14	23559272	23559272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagcagggaagccactccctCaggatggatcatctcgtcct	10	14	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	23559272	23559272	C	T	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.529	p.E177K	1.000	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	39	0	0	23	11	32.35	-	-	-	T	23559272	C	T	23559272	3	4	677	1	0	0	0	0	1	0	0	0	142	835	29	2	3707	2	ACIN1	14	23559272	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1598095	23559272	83790268	468	58534										
THTPA	0	genome.wustl.edu	37	chr14	24026073	24026073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggagtaccgggtcaccttccGagacacctactatgacaccc	9	15	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	24026073	24026073	G	A	SNP	THTPA	ENST00000288014	human	ensembl	69_37n	1	known	missense	c.107	p.R36Q	0.987	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	-	no_errors	THTPA	HGNC	ENSG00000259431	99	0	0	43	33	43.42	-	-	-	A	24026073	G	A	24026073	3	1	677	1	0	0	0	0	1	0	0	0	15976	1058	37	1	109	1	THTPA	14	24026073	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	466801	24026073	83323467	469	58535										
THTPA	0	genome.wustl.edu	37	chr14	24026219	24026219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtataaggaactcacagcgGaacctacaattgtggcccaa	9	10	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	24026219	24026219	G	A	SNP	THTPA	ENST00000288014	human	ensembl	69_37n	1	known	missense	c.253	p.E85K	0.224	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	pfam_CYTH_domain,superfamily_CYTH-like_domain,pirsf_ThTPase	-	no_errors	THTPA	HGNC	ENSG00000259431	141	0	0	50	25	33.33	-	-	-	A	24026219	G	A	24026219	3	1	677	1	0	0	0	0	1	0	0	0	15976	1175	41	2	255	2	THTPA	14	24026219	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	146	24026219	83323321	470	58536										
JPH4	0	genome.wustl.edu	37	chr14	24041029	24041029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acctggggcctctagcatggGctgcaggtcctgggctatca	14	12	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	24041029	24041029	G	A	SNP	JPH4	ENST00000356300	human	ensembl	69_37n	-1	known	missense	c.1252	p.P418S	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051	48	0	0	30	6	16.67	-	-	-	A	24041029	G	A	24041029	3	1	677	1	0	0	0	0	1	0	0	0	8017	1203	42	4	646	4	JPH4	14	24041029	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	14810	24041029	83308511	471	58537										
ADCY4	0	genome.wustl.edu	37	chr14	24788637	24788637	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccactgaacttgggcttggaGagcagctgtatatagagaag	13	7	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	24788637	24788637	G	T	SNP	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	silent	c.2739	p.L913	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	119	1	0.83	100	57	36.31	-	-	-	T	24788637	G	T	24788637	2	4	677	1	0	0	0	0	0	0	0	1	296	929	33	2		2	ADCY4	14	24788637	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	747608	24788637	82560903	472	58538										
NFATC4	0	genome.wustl.edu	37	chr14	24837614	24837614	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gttcggggaggaaaaggaggCccccccgctgggcgcggggg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	24837614	24837614	C	-	DEL	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	frame_shift_del	c.257	p.P88fs	0.992	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	23	0	0	3	2	40	-	-	-	-	24837614	C	-	24837614	7	5	677	1	0	1	0	1	0	0	0	0	10437	739	26	0	263	0	NFATC4	14	24837614	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	48977	24837614	82511926	473	58539										
PRPF39	0	genome.wustl.edu	37	chr14	45565402	45565402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtatgcagaccttgaaaagCggcacgacaacattaaacca	8	10	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	45565402	45565402	C	T	SNP	PRPF39	ENST00000355765	human	ensembl	69_37n	1	known	missense	c.421	p.R141W	1.000	smart_HAT	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246	82	0	0	91	23	20.18	-	-	-	T	45565402	C	T	45565402	3	4	677	1	0	0	0	0	1	0	0	0	12650	759	27	1	427	1	PRPF39	14	45565402	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	20727788	45565402	61784138	474	58540										
DAAM1	0	genome.wustl.edu	37	chr14	59789941	59789941	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccagcgaaaggacccgctttCaggtgggtgttcgctcagcc	13	13	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	59789941	59789941	C	G	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.772	p.Q258E	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	14	0	0	17	12	41.38	-	-	-	G	59789941	C	G	59789941	3	3	677	1	0	0	0	0	1	0	0	0	4247	827	29	2	790	2	DAAM1	14	59789941	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14224539	59789941	47559599	475	58541										
DAAM1	0	genome.wustl.edu	37	chr14	59792700	59792700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcacatagacacaaaaagtgCaactcagatgtttgagctga	8	8	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	59792700	59792700	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.1079	p.A360V	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	102	0	0	72	39	35.14	-	-	-	T	59792700	C	T	59792700	3	4	677	1	0	0	0	0	1	0	0	0	4247	710	25	4	1113	4	DAAM1	14	59792700	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2759	59792700	47556840	476	58542										
HIF1A	0	genome.wustl.edu	37	chr14	62187188	62187188	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagttttttatgagcttgctCatcagttgccacttccacat	6	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	62187188	62187188	C	T	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	missense	c.196	p.H66Y	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	81	0	0	51	31	37.8	-	-	-	T	62187188	C	T	62187188	3	4	677	1	0	0	0	0	1	0	0	0	7154	826	29	2	130	2	HIF1A	14	62187188	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2394488	62187188	45162352	477	58543										
SYNE2	0	genome.wustl.edu	37	chr14	64619358	64619358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttatctgactttggagagtgGggcagtgccattgttagaag	14	5	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	64619358	64619358	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.15716	p.G5239E	0.927	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	79	0	0	63	49	43.75	-	-	-	A	64619358	G	A	64619358	3	1	677	1	0	0	0	0	1	0	0	0	15538	1232	43	4	16050	4	SYNE2	14	64619358	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2432170	64619358	42730182	478	58544										
ESR2	0	genome.wustl.edu	37	chr14	64746795	64746795	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgcagacagcgcagaagtGagcatccctctttgaacctg	11	12	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	64746795	64746795	G	A	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	missense	c.439	p.H147Y	1.000	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	56	0	0	67	36	34.95	-	-	-	A	64746795	G	A	64746795	3	1	677	1	0	0	0	0	1	0	0	0	5294	1290	45	2	1267	2	ESR2	14	64746795	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	127437	64746795	42602745	479	58545										
COQ6	0	genome.wustl.edu	37	chr14	74422535	74422535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acgcctgctcagaggccctgAtaatgtttgataaggataat	10	8	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	74422535	74422535	A	T	SNP	COQ6	ENST00000334571	human	ensembl	69_37n	1	known	missense	c.385	p.I129L	1.000	tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723	133	0	0	126	42	25	-	-	-	T	74422535	A	T	74422535	3	4	677	1	0	0	0	0	1	0	0	0	3779	333	12	5	399	5	COQ6	14	74422535	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	9675740	74422535	32927005	480	58546										
MLH3	0	genome.wustl.edu	37	chr14	75514822	75514822	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcaaagtgacatggtgtctGaaaagggcttaaaaacattt	9	6	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	75514822	75514822	G	C	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.1537	p.Q513E	0.094	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	79	0	0	75	39	34.21	-	-	-	C	75514822	G	C	75514822	3	2	677	1	0	0	0	0	1	0	0	0	9689	1299	45	2	2872	2	MLH3	14	75514822	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1092287	75514822	31834718	481	58547										
SPATA7	0	genome.wustl.edu	37	chr14	88904306	88904306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttttgaaaaggctgggaattCagaaccaaatgaattaaaaa	8	4	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	88904306	88904306	C	T	SNP	SPATA7	ENST00000393545	human	ensembl	69_37n	1	known	missense	c.1340	p.S447L	0.038	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317	74	0	0	61	27	30.68	-	-	-	T	88904306	C	T	88904306	3	4	677	1	0	0	0	0	1	0	0	0	15105	838	29	2	1386	2	SPATA7	14	88904306	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	13389484	88904306	18445234	482	58548										
SERPINA11	0	genome.wustl.edu	37	chr14	94909049	94909049	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgaagtgggcatgtgggtctGacatggtgttcagagatggg	18	4	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	94909049	94909049	G	C	SNP	SERPINA11	ENST00000334708	human	ensembl	69_37n	-1	known	nonsense	c.1163	p.S388*	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910	114	1	0.87	42	20	32.26	-	-	-	C	94909049	G	C	94909049	4	2	677	1	0	0	0	0	0	1	0	0	14176	1294	45	2	109	2	SERPINA11	14	94909049	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6004743	94909049	12440491	483	58549										
HHIPL1	0	genome.wustl.edu	37	chr14	100118811	100118811	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtcaacaagaacctcaactCaaacctgggccacgtggtag	10	12	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	100118811	100118811	C	G	SNP	HHIPL1	ENST00000330710	human	ensembl	69_37n	1	known	nonsense	c.506	p.S169*	0.047	pfam_Folate_rcpt-like	pfam_Srcr_rcpt,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	HHIPL1	HGNC	ENSG00000182218	83	0	0	29	11	27.5	-	-	-	G	100118811	C	G	100118811	4	3	677	1	0	0	0	0	0	1	0	0	7144	838	29	2	512	2	HHIPL1	14	100118811	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5209762	100118811	7230729	484	58550										
DYNC1H1	0	genome.wustl.edu	37	chr14	102500780	102500780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaatgccatcatgctgaaacGattcaataggtatgagctcg	9	8	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	102500780	102500780	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.10745	p.R3582Q	0.927	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	74	0	0	46	22	32.35	-	-	-	A	102500780	G	A	102500780	3	1	677	1	0	0	0	0	1	0	0	0	4876	1058	37	1	10967	1	DYNC1H1	14	102500780	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2381969	102500780	4848760	485	58551										
INF2	0	genome.wustl.edu	37	chr14	105169695	105169695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agctctccggcagcgacaacGtgccctacgtggtcaccctg	11	16	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	105169695	105169695	G	A	SNP	INF2	ENST00000392634	human	ensembl	69_37n	1	known	missense	c.571	p.V191M	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_WH2_dom,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	54	0	0	23	18	43.9	-	-	-	A	105169695	G	A	105169695	3	1	677	1	0	0	0	0	1	0	0	0	7788	1145	40	1	581	1	INF2	14	105169695	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2668915	105169695	2179845	486	58552										
AHNAK2	0	genome.wustl.edu	37	chr14	105410897	105410897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttgctgtctttggcagtcaCgtccttgtcagccagggaca	11	12	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	105410897	105410897	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.10891	p.V3631M	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	115	0	0	118	58	32.95	-	-	-	T	105410897	C	T	105410897	3	4	677	1	0	0	0	0	1	0	0	0	415	536	19	1	6500	1	AHNAK2	14	105410897	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	241202	105410897	1938643	487	58553										
BRF1	0	genome.wustl.edu	37	chr14	105707730	105707730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attccagcaggtgcgcaaagCgtggaatatacaggcacggg	14	9	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	14	105707730	105707730	C	T	SNP	BRF1	ENST00000546474	human	ensembl	69_37n	-1	known	missense	c.566	p.R189H	0.999	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB,pfscan_Znf_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024	65	0	0	33	7	17.5	-	-	-	T	105707730	C	T	105707730	3	4	677	1	0	0	0	0	1	0	0	0	1518	768	27	1	1519	1	BRF1	14	105707730	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	296833	105707730	1641810	488	58554										
CYFIP1	0	genome.wustl.edu	37	chr15	22926026	22926026	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aatgcatttgttactggcatCgcaagatacattgaacaagc	8	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	22926026	22926026	C	T	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	silent	c.168	p.I56	0.993	pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	118	1	0.84	37	39	51.32	-	-	-	T	22926026	C	T	22926026	2	4	677	1	0	0	0	0	0	0	0	1	4168	874	31	1		1	CYFIP1	15	22926026	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		22926026	79605366	489	58555										
HERC2	0	genome.wustl.edu	37	chr15	28375390	28375390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcaacccttggacctgccGaggccttcgaacatggtcat	10	14	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	28375390	28375390	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.12721	p.R4241W	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	106	0	0	33	32	49.23	-	-	-	A	28375390	G	A	28375390	3	1	677	1	0	0	0	0	1	0	0	0	7109	1057	37	1	1827	1	HERC2	15	28375390	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5449364	28375390	74156002	490	58556										
APBA2	0	genome.wustl.edu	37	chr15	29397633	29397633	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccttcagcgtggcctaccagGagttcctgcgagccaatggc	12	14	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	29397633	29397633	G	T	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	nonsense	c.1576	p.E526*	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	46	0	0	9	19	65.52	-	-	-	T	29397633	G	T	29397633	4	4	677	1	0	0	0	0	0	1	0	0	758	1175	41	2	1606	2	APBA2	15	29397633	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1022243	29397633	73133759	491	58557										
ZNF770	0	genome.wustl.edu	37	chr15	35274694	35274694	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgccacttctagcagcaaaAcagctgtgttcattgagaat	8	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	35274694	35274694	A	G	SNP	ZNF770	ENST00000356321	human	ensembl	69_37n	-1	known	silent	c.942	p.C314	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146	41	0	0	28	14	33.33	-	-	-	G	35274694	A	G	35274694	2	3	677	1	0	0	0	0	0	0	0	1	18237	41	2	5		5	ZNF770	15	35274694	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	5877061	35274694	67256698	492	58558										
LTK	0	genome.wustl.edu	37	chr15	41796393	41796393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagaagtcccttcctcctctGgggtgggccccagctccatt	10	16	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	41796393	41796393	G	A	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.2396	p.P799L	0.462	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	26	0	0	5	4	44.44	-	-	-	A	41796393	G	A	41796393	3	1	677	1	0	0	0	0	1	0	0	0	9146	1348	47	4	202	4	LTK	15	41796393	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6521699	41796393	60734999	493	58559										
MGA	0	genome.wustl.edu	37	chr15	41989020	41989020	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaggtagtgaatgctaatcaGaatgcctctccaaatgtccc	8	10	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	41989020	41989020	G	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	silent	c.1812	p.Q604	0.090	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	36	0	0	11	15	57.69	-	-	-	A	41989020	G	A	41989020	2	1	677	1	0	0	0	0	0	0	0	1	9611	933	33	2		2	MGA	15	41989020	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	192627	41989020	60542372	494	58560										
EHD4	0	genome.wustl.edu	37	chr15	42192996	42192996	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgccgtcgcagtcgcagtcGgccagcttccagatcttgcc	11	15	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	42192996	42192996	G	A	SNP	EHD4	ENST00000220325	human	ensembl	69_37n	-1	known	silent	c.1473	p.A491	0.387	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	44	0	0	17	17	48.57	-	-	-	A	42192996	G	A	42192996	2	1	677	1	0	0	0	0	0	0	0	1	5015	1103	39	1		1	EHD4	15	42192996	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	203976	42192996	60338396	495	58561										
TTBK2	0	genome.wustl.edu	37	chr15	43102874	43102874	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtctagaaagatgctgaattCtggagggagatgtttcaaca	12	5	3	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	43102874	43102874	C	T	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	missense	c.760	p.E254K	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	95	0	0	34	39	53.42	-	-	-	T	43102874	C	T	43102874	3	4	677	1	0	0	0	0	1	0	0	0	16774	922	32	2	3002	2	TTBK2	15	43102874	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	909878	43102874	59428518	496	58562										
TGM7	0	genome.wustl.edu	37	chr15	43584976	43584976	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cacactgtgaccttggccctGagagatctctattttcagag	9	11	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	43584976	43584976	G	C	SNP	TGM7	ENST00000452443	human	ensembl	69_37n	-1	known	missense	c.370	p.Q124E	0.001	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	99	0	0	29	29	50	-	-	-	C	43584976	G	C	43584976	3	2	677	1	0	0	0	0	1	0	0	0	15930	1299	45	2	1806	2	TGM7	15	43584976	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	482102	43584976	58946416	497	58563										
SEMA6D	0	genome.wustl.edu	37	chr15	48056840	48056840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgttttcctttcaggcctgGctgttgtgcaaaacacggcc	10	12	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	48056840	48056840	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	1	known	missense	c.1103	p.G368D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	55	0	0	33	9	21.43	-	-	-	A	48056840	G	A	48056840	3	1	677	1	0	0	0	0	1	0	0	0	14130	1203	42	4	1145	4	SEMA6D	15	48056840	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4471864	48056840	54474552	498	58564										
GALK2	0	genome.wustl.edu	37	chr15	49531449	49531449	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcttagtaacctgactggaaTgaactgcctggtagatggaa	11	7	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	49531449	49531449	T	A	SNP	GALK2	ENST00000560031	human	ensembl	69_37n	1	known	missense	c.389	p.M130K	1.000	superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	-	no_errors	GALK2	HGNC	ENSG00000156958	147	0	0	77	37	32.46	-	-	-	A	49531449	T	A	49531449	3	1	677	1	0	0	0	0	1	0	0	0	6254	1464	51	5	431	5	GALK2	15	49531449	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1474609	49531449	52999943	499	58565										
AP4E1	0	genome.wustl.edu	37	chr15	51242111	51242111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcatcctgatattcccaatAactttctgagactactagcg	6	11	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	51242111	51242111	A	G	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	missense	c.1405	p.N469D	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	149	0	0	111	13	10.4	-	-	-	G	51242111	A	G	51242111	3	3	677	1	0	0	0	0	1	0	0	0	753	362	13	5	1451	5	AP4E1	15	51242111	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	1710662	51242111	51289281	500	58566										
NEDD4	0	genome.wustl.edu	37	chr15	56209009	56209009	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcttctggctgcaaagtgCaatcgtaagctttgtgccat	9	10	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	56209009	56209009	C	T	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	silent	c.21	p.L7	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	63	0	0	32	24	42.86	-	-	-	T	56209009	C	T	56209009	2	4	677	1	0	0	0	0	0	0	0	1	10382	709	25	4		4	NEDD4	15	56209009	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4966898	56209009	46322383	501	58567										
TLN2	0	genome.wustl.edu	37	chr15	62948251	62948251	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgatcagaatgtagattcgaGagaccccgtgcagctgaact	11	9	1	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	62948251	62948251	G	A	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.626	p.R209K	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	80	0	0	24	25	51.02	-	-	-	A	62948251	G	A	62948251	3	1	677	1	0	0	0	0	1	0	0	0	16043	942	33	2	644	2	TLN2	15	62948251	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6739242	62948251	39583141	502	58568										
ZNF592	0	genome.wustl.edu	37	chr15	85341183	85341183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acactgccaggttttccacaAatgtgcattctgccccatgg	8	13	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	85341183	85341183	A	G	SNP	ZNF592	ENST00000299927	human	ensembl	69_37n	1	known	missense	c.2483	p.K828R	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	51	0	0	15	16	51.61	-	-	-	G	85341183	A	G	85341183	3	3	677	1	0	0	0	0	1	0	0	0	18118	14	1	5	2493	5	ZNF592	15	85341183	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	22392932	85341183	17190209	503	58569										
AGBL1	0	genome.wustl.edu	37	chr15	86702163	86702163	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgtgcttttgtttttcttaGtctccatgggagccatgctg	10	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	86702163	86702163	G	A	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	splice_site	c.257-1	e3-1	0.989	-	-	-	no_errors	AGBL1	HGNC	ENSG00000166748	128	1	0.78	42	52	55.32	-	-	-	A	86702163	G	A	86702163	5	1	677	1	0	0	0	0	0	0	1	0	375	1043	36	4	266	4	AGBL1	15	86702163	Splice_Site	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1360980	86702163	15829229	504	58570										
PLIN1	0	genome.wustl.edu	37	chr15	90214720	90214720	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gggaagggctcaccttttcaGgggggtactggagggcgggg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	15	90214720	90214720	G	-	DEL	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	frame_shift_del	c.326	p.P109fs	0.988	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	41	0	0	4	3	42.86	-	-	-	-	90214720	G	-	90214720	7	5	677	1	0	1	0	1	0	0	0	0	12163	1000	35	0	1266	0	PLIN1	15	90214720	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	3512557	90214720	12316672	505	58571										
PDIA2	0	genome.wustl.edu	37	chr16	336659	336659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cattgctgagctggatgccaCggccaacgagctggatgcct	13	12	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	336659	336659	C	T	SNP	PDIA2	ENST00000219406	human	ensembl	69_37n	1	known	missense	c.1346	p.T449M	0.998	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615	41	0	0	32	11	25.58	-	-	-	T	336659	C	T	336659	3	4	677	1	0	0	0	0	1	0	0	0	11741	536	19	1	1380	1	PDIA2	16	336659	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		336659	90018094	506	58572										
C16orf59	0	genome.wustl.edu	37	chr16	2510820	2510820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attcttggctttcacagcatGcacacccagtccacaagacc	6	15	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	2510820	2510820	G	A	SNP	C16orf59	ENST00000361837	human	ensembl	69_37n	1	known	missense	c.200	p.C67Y	0.002	NULL	NULL	-	no_errors	C16orf59	HGNC	ENSG00000162062	35	0	0	21	8	27.59	-	-	-	A	2510820	G	A	2510820	3	1	677	1	0	0	0	0	1	0	0	0	1836	1319	46	4	214	4	C16orf59	16	2510820	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2174161	2510820	87843933	507	58573										
NLRC3	0	genome.wustl.edu	37	chr16	3613884	3613884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctcgggggccacagctctgCatcctggggccccgtcctgc	13	18	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	3613884	3613884	C	T	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	missense	c.1195	p.A399T	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	27	0	0	9	6	40	-	-	-	T	3613884	C	T	3613884	3	4	677	1	0	0	0	0	1	0	0	0	10540	710	25	4	2208	4	NLRC3	16	3613884	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1103064	3613884	86740869	508	58574										
CLEC16A	0	genome.wustl.edu	37	chr16	11063041	11063041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttgctctcaaataactacGtaaattctatcatcgttcat	3	9	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	11063041	11063041	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.367	p.V123I	1.000	pfam_Uncharacterised_FPL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	136	1	0.73	114	60	34.48	-	-	-	A	11063041	G	A	11063041	3	1	677	1	0	0	0	0	1	0	0	0	3530	1145	40	1	381	1	CLEC16A	16	11063041	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	7449157	11063041	79291712	509	58575										
TXNDC11	0	genome.wustl.edu	37	chr16	11792007	11792007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tattaaaggatgactttcggCcaggggattaaaaggtatga	12	4	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	11792007	11792007	C	T	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.1162	p.A388T	0.998	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	81	0	0	78	22	22	-	-	-	T	11792007	C	T	11792007	3	4	677	1	0	0	0	0	1	0	0	0	16889	739	26	4	1819	4	TXNDC11	16	11792007	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	728966	11792007	78562746	510	58576										
ZC3H7A	0	genome.wustl.edu	37	chr16	11868840	11868840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atatgtgaaaacatacctggCtcaatatcttccacagaatg	6	9	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	11868840	11868840	C	T	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	silent	c.615	p.E205	0.976	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	61	0	0	54	18	24.66	-	-	-	T	11868840	C	T	11868840	2	4	677	1	0	0	0	0	0	0	0	1	17668	796	28	4		4	ZC3H7A	16	11868840	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	76833	11868840	78485913	511	58577										
MYH11	0	genome.wustl.edu	37	chr16	15813521	15813521	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgtggcaaagatctcatctCtggaggcacgggcatcttcc	11	12	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	15813521	15813521	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.5024	p.R1675K	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	118	0	0	91	38	29.46	-	-	-	T	15813521	C	T	15813521	3	4	677	1	0	0	0	0	1	0	0	0	10103	913	32	2	978	2	MYH11	16	15813521	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3944681	15813521	74541232	512	58578										
NOMO2	0	genome.wustl.edu	37	chr16	18573201	18573201	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcggggcgggcgctcacctcGatgagcgagtagttgatctc	16	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	18573201	18573201	G	C	SNP	NOMO2	ENST00000381474	human	ensembl	69_37n	-1	known	missense	c.162	p.I54M	1.000	superfamily_Collagen-bd_Cna_B-typ_dom	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	11	0	0	15	6	28.57	-	-	-	C	18573201	G	C	18573201	3	2	677	1	0	0	0	0	1	0	0	0	10604	1048	37	3	3773	3	NOMO2	16	18573201	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2759680	18573201	71781552	513	58579										
SYT17	0	genome.wustl.edu	37	chr16	19195030	19195030	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgactccaacagcgacgatgTggactctctgacagacgagg	12	12	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	19195030	19195030	T	C	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	missense	c.512	p.V171A	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	45	0	0	34	21	38.18	-	-	-	C	19195030	T	C	19195030	3	2	677	1	0	0	0	0	1	0	0	0	15565	1696	59	5	530	5	SYT17	16	19195030	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	621829	19195030	71159723	514	58580										
PALB2	0	genome.wustl.edu	37	chr16	23634364	23634364	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgctactaactagcctcctCtttgtcaggccaagcacagc	7	15	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	23634364	23634364	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	silent	c.2922	p.K974	0.512	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	145	1	0.68	109	60	35.5	-	-	-	T	23634364	C	T	23634364	2	4	677	1	0	0	0	0	0	0	0	1	11479	912	32	2		2	PALB2	16	23634364	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4439334	23634364	66720389	515	58581										
ZKSCAN2	0	genome.wustl.edu	37	chr16	25258142	25258142	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcctcctcctccaccaagcTgatgtgttccttagcactga	6	15	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	25258142	25258142	T	C	SNP	ZKSCAN2	ENST00000328086	human	ensembl	69_37n	-1	known	missense	c.1375	p.S459G	0.150	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592	137	0	0	79	73	48.03	-	-	-	C	25258142	T	C	25258142	3	2	677	1	0	0	0	0	1	0	0	0	17783	1580	55	5	1540	5	ZKSCAN2	16	25258142	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1623778	25258142	65096611	516	58582										
KIAA0556	0	genome.wustl.edu	37	chr16	27777778	27777778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggaactacaataaatctcccGaggacacctatcgcggggta	10	11	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	27777778	27777778	G	A	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.3958	p.E1320K	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	47	0	0	30	6	16.67	-	-	-	A	27777778	G	A	27777778	3	1	677	1	0	0	0	0	1	0	0	0	8235	1059	37	1	4036	1	KIAA0556	16	27777778	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2519636	27777778	62576975	517	58583										
SH2B1	0	genome.wustl.edu	37	chr16	28885049	28885049	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtggggacgcgggggtgcccCcaatggtgcagctgcagcag	19	11	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	28885049	28885049	C	A	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.2179	p.P727T	0.002	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	59	0	0	15	6	28.57	-	-	-	A	28885049	C	A	28885049	3	1	677	1	0	0	0	0	1	0	0	0	14315	623	22	4	2366	4	SH2B1	16	28885049	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1107271	28885049	61469704	518	58584										
MAZ	0	genome.wustl.edu	37	chr16	29818053	29818054	+	Frame_Shift_Ins	INS	-	-	C													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtttccttgcacgctgctggINSccccccccttccccgtgctg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	29818053	29818054	-	C	INS	MAZ	ENST00000219782	human	ensembl	69_37n	1	known	frame_shift_ins	c.31_32	p.F14fs	0.017:0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495	22	0	0	4	2	33.33	-	-	-	C	29818054	-	C	29818053	7	5	677	1	0	1	1	0	0	0	0	0	9411	1203	42	0	33	0	MAZ	16	29818053	Frame_Shift_Ins	INS	-	TCGA-D8-A1J8-01A-11D-A13L-09	933004	29818053	60536700	519	58585										
MAZ	0	genome.wustl.edu	37	chr16	29819914	29819914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtgaggcagctttcgccacGaaggatcggctgcgggcgca	16	11	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	29819914	29819914	G	A	SNP	MAZ	ENST00000568411	human	ensembl	69_37n	1	putative	missense	c.142	p.E48K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAZ	HGNC	ENSG00000103495	32	0	0	17	13	43.33	-	-	-	A	29819914	G	A	29819914	3	1	677	1	0	0	0	0	1	0	0	0	9411	1045	37	1	1145	1	MAZ	16	29819914	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1861	29819914	60534839	520	58586										
ARMC5	0	genome.wustl.edu	37	chr16	31477928	31477928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggaggctgctggccgtttCctactgcctgggctggagga	16	11	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	31477928	31477928	C	A	SNP	ARMC5	ENST00000408912	human	ensembl	69_37n	1	known	missense	c.2811	p.F937L	1.000	superfamily_BTB/POZ_fold	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691	41	0	0	12	5	27.78	-	-	-	A	31477928	C	A	31477928	3	1	677	1	0	0	0	0	1	0	0	0	958	854	30	2	2862	2	ARMC5	16	31477928	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1658014	31477928	58876825	521	58587										
SLC5A2	0	genome.wustl.edu	37	chr16	31499002	31499002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	taccacctgctccggcacccCgtgaccggggatctgccgtg	12	17	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	31499002	31499002	C	T	SNP	SLC5A2	ENST00000330498	human	ensembl	69_37n	1	known	silent	c.807	p.P269	0.999	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675	29	0	0	4	15	78.95	-	-	-	T	31499002	C	T	31499002	2	4	677	1	0	0	0	0	0	0	0	1	14754	639	23	1		1	SLC5A2	16	31499002	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	21074	31499002	58855751	522	58588										
ZNF423	0	genome.wustl.edu	37	chr16	49660157	49660157	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggcacttgatgcactggtaTgtctttttctgtttggaaac	10	7	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	49660157	49660157	T	A	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	silent	c.3501	p.T1167	0.889	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	250	0	0	82	94	53.41	-	-	-	A	49660157	T	A	49660157	2	1	677	1	0	0	0	0	0	0	0	1	17994	1451	51	5		5	ZNF423	16	49660157	Silent	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	18161155	49660157	40694596	523	58589										
FTO	0	genome.wustl.edu	37	chr16	53860226	53860226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaacggacaagatgaagtgGacattaagagcagagcagca	12	7	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	53860226	53860226	G	C	SNP	FTO	ENST00000471389	human	ensembl	69_37n	1	known	missense	c.574	p.D192H	0.028	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718	118	0	0	33	30	47.62	-	-	-	C	53860226	G	C	53860226	3	2	677	1	0	0	0	0	1	0	0	0	6135	1174	41	2	584	2	FTO	16	53860226	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4200069	53860226	36494527	524	58590										
MT1E	0	genome.wustl.edu	37	chr16	56660528	56660528	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggccctgagtgcatccttctGgggaactgggctttctttgc	13	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	56660528	56660528	G	A	SNP	MT1E	ENST00000330439	human	ensembl	69_37n	1	putative	nonsense	c.179	p.W60*	0.026	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	-	no_errors	MT1E	HGNC	ENSG00000169715	65	0	0	45	52	53.61	-	-	-	A	56660528	G	A	56660528	4	1	677	1	0	0	0	0	0	1	0	0	9971	1363	47	4		4	MT1E	16	56660528	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2800302	56660528	33694225	525	58591										
NLRC5	0	genome.wustl.edu	37	chr16	57103787	57103787	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcaccgagggcctcgcccaCctggcatctggtctgggcca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	57103787	57103787	C	-	DEL	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	frame_shift_del	c.4539	p.L1514fs	0.859	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	25	0	0	6	2	25	-	-	-	-	57103787	C	-	57103787	7	5	677	1	0	1	0	1	0	0	0	0	10542	506	18	0	4677	0	NLRC5	16	57103787	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	443259	57103787	33250966	526	58592										
GPR56	0	genome.wustl.edu	37	chr16	57689382	57689382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttccagaggacgaaaggccgGagcggggaggctgagaagag	19	7	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	57689382	57689382	G	A	SNP	GPR56	ENST00000565391	human	ensembl	69_37n	1	putative	missense	c.325	p.E109K	0.603	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	GPR56	HGNC	ENSG00000205336	29	0	0	3	7	70	-	-	-	A	57689382	G	A	57689382	3	1	677	1	0	0	0	0	1	0	0	0	6750	1161	41	2	873	2	GPR56	16	57689382	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	585595	57689382	32665371	527	58593										
CNOT1	0	genome.wustl.edu	37	chr16	58570976	58570976	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	attcacccattccctcagaaGatactctgccttctccctca	3	17	5	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	58570976	58570976	G	C	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.5563	p.L1855V	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	82	0	0	25	29	53.7	-	-	-	C	58570976	G	C	58570976	3	2	677	1	0	0	0	0	1	0	0	0	3647	942	33	2	1611	2	CNOT1	16	58570976	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	881594	58570976	31783777	528	58594										
CNOT1	0	genome.wustl.edu	37	chr16	58576209	58576209	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcacagtatctgcgtccttCttgcctagcatgttttctca	6	12	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	58576209	58576209	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.4606	p.E1536K	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	82	0	0	25	25	50	-	-	-	T	58576209	C	T	58576209	3	4	677	1	0	0	0	0	1	0	0	0	3647	922	32	2	2592	2	CNOT1	16	58576209	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5233	58576209	31778544	529	58595										
SLC9A5	0	genome.wustl.edu	37	chr16	67289057	67289057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctctttatcatcgtctttggCgagtccctgctcaacgatgc	8	13	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	67289057	67289057	C	T	SNP	SLC9A5	ENST00000566626	human	ensembl	69_37n	1	putative	missense	c.170	p.A57V	0.999	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	pseudogene:no_stop_codon	SLC9A5	HGNC	ENSG00000135740	101	0	0	66	21	24.14	-	-	-	T	67289057	C	T	67289057	3	4	677	1	0	0	0	0	1	0	0	0	14806	755	27	1	634	1	SLC9A5	16	67289057	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	8712848	67289057	23065696	530	58596										
KCTD19	0	genome.wustl.edu	37	chr16	67327655	67327655	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagcctcgcttcccaagggGagctgcagggtggcctcctc	14	15	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	67327655	67327655	G	T	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	silent	c.2010	p.L670	0.090	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	88	0	0	24	29	54.72	-	-	-	T	67327655	G	T	67327655	2	4	677	1	0	0	0	0	0	0	0	1	8160	1161	41	2		2	KCTD19	16	67327655	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	38598	67327655	23027098	531	58597										
NFAT5	0	genome.wustl.edu	37	chr16	69704148	69704148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atttcaatcagatgaaaactCttggaagtcagaagctgaaa	8	6	4	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	69704148	69704148	C	G	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	missense	c.1514	p.S505C	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	51	0	0	24	18	42.86	-	-	-	G	69704148	C	G	69704148	3	3	677	1	0	0	0	0	1	0	0	0	10432	913	32	2	1548	2	NFAT5	16	69704148	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2376493	69704148	20650605	532	58598										
WWP2	0	genome.wustl.edu	37	chr16	69874100	69874100	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttgtctcaggcggagagctgAcaattttcctggacgggcca	13	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	69874100	69874100	A	T	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.412	p.T138S	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	62	0	0	13	25	64.1	-	-	-	T	69874100	A	T	69874100	3	4	677	1	0	0	0	0	1	0	0	0	17513	275	10	5	426	5	WWP2	16	69874100	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	169952	69874100	20480653	533	58599										
IL34	0	genome.wustl.edu	37	chr16	70688451	70688451	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggtccacagatcttgggatCttccttggcgtggccttggg	14	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	70688451	70688451	C	G	SNP	IL34	ENST00000288098	human	ensembl	69_37n	1	known	missense	c.39	p.I13M	0.304	NULL	prints_Interleukin-34	-	no_errors	IL34	HGNC	ENSG00000157368	285	0	0	76	120	61.22	-	-	-	G	70688451	C	G	70688451	3	3	677	1	0	0	0	0	1	0	0	0	7748	903	32	2	45	2	IL34	16	70688451	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	814351	70688451	19666302	534	58600										
HYDIN	0	genome.wustl.edu	37	chr16	70884495	70884495	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggactttcttttccacattGcagatcaaattaaagttcac	5	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	70884495	70884495	G	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.12504	p.C4168	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	104	0	0	38	34	47.22	-	-	-	A	70884495	G	A	70884495	2	1	677	1	0	0	0	0	0	0	0	1	7521	1311	46	4		4	HYDIN	16	70884495	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	196044	70884495	19470258	535	58601										
HYDIN	0	genome.wustl.edu	37	chr16	71026093	71026093	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acactggggcactgtagggcTtcttcggcaatgtcacaaac	11	11	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	71026093	71026093	T	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.3665	p.K1222T	0.950	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	155	0	0	18	34	65.38	-	-	-	G	71026093	T	G	71026093	3	3	677	1	0	0	0	0	1	0	0	0	7521	1609	56	5	11949	5	HYDIN	16	71026093	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	141598	71026093	19328660	536	58602										
CDYL2	0	genome.wustl.edu	37	chr16	80666970	80666970	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggacagcaggatgtgcgtGaacccttcttccttccgcac	10	14	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	80666970	80666970	G	C	SNP	CDYL2	ENST00000299564	human	ensembl	69_37n	-1	known	missense	c.780	p.F260L	1.000	NULL	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	66	0	0	22	42	65.62	-	-	-	C	80666970	G	C	80666970	3	2	677	1	0	0	0	0	1	0	0	0	3215	1281	45	2	760	2	CDYL2	16	80666970	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	9640877	80666970	9687783	537	58603										
ATP2C2	0	genome.wustl.edu	37	chr16	84474522	84474522	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttctaccatccaaggaagtCattaaggaattttccaatgt	6	9	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	84474522	84474522	C	A	SNP	ATP2C2	ENST00000262429	human	ensembl	69_37n	1	known	silent	c.1269	p.V423	0.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C2	HGNC	ENSG00000064270	151	0	0	55	55	50	-	-	-	A	84474522	C	A	84474522	2	1	677	1	0	0	0	0	0	0	0	1	1148	813	29	2		2	ATP2C2	16	84474522	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3807552	84474522	5880231	538	58604										
ZDHHC7	0	genome.wustl.edu	37	chr16	85010039	85010039	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggattcatccagaggagtgaGgggggccccccaaagacgga							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	16	85010039	85010039	G	-	DEL	ZDHHC7	ENST00000344861	human	ensembl	69_37n	-1	known	frame_shift_del	c.948	p.S317fs	0.902	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC7	HGNC	ENSG00000153786	69	0	0	17	14	43.75	-	-	-	-	85010039	G	-	85010039	7	5	677	1	0	1	0	1	0	0	0	0	17716	987	35	0	93	0	ZDHHC7	16	85010039	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	535517	85010039	5344714	539	58605										
PRPF8	0	genome.wustl.edu	37	chr17	1554841	1554841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtggatccaacctaagggttCcatctcctataggtaaagag	10	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	1554841	1554841	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.6517	p.E2173K	1.000	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	95	0	0	23	25	52.08	-	-	-	T	1554841	C	T	1554841	3	4	677	1	0	0	0	0	1	0	0	0	12656	864	30	2	502	2	PRPF8	17	1554841	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		1554841	79640369	540	58606										
CYB5D2	0	genome.wustl.edu	37	chr17	4053207	4053207	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgagacgcatccagagctttCgtgaccggggactgttctga	13	11	1	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	4053207	4053207	C	T	SNP	CYB5D2	ENST00000301391	human	ensembl	69_37n	1	known	silent	c.273	p.F91	0.992	pfam_Cyt_B5,superfamily_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5	-	no_errors	CYB5D2	HGNC	ENSG00000167740	81	0	0	48	8	14.29	-	-	-	T	4053207	C	T	4053207	2	4	677	1	0	0	0	0	0	0	0	1	4156	883	31	1		1	CYB5D2	17	4053207	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2498366	4053207	77142003	541	58607										
NLRP1	0	genome.wustl.edu	37	chr17	5436238	5436238	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccaaaggcttcgtatgcaggTccccttgagaggcaggagaa	13	10	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	5436238	5436238	T	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.3200	p.D1067V	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	98	0	0	38	6	13.64	-	-	-	A	5436238	T	A	5436238	3	1	677	1	0	0	0	0	1	0	0	0	10543	1667	58	5	1312	5	NLRP1	17	5436238	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	1383031	5436238	75758972	542	58608										
SLC46A1	0	genome.wustl.edu	37	chr17	26727696	26727696	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaccccttcataaagttcaGagtggctgggtagagtgagt	13	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	26727696	26727696	G	C	SNP	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	missense	c.1252	p.L418V	0.965	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	55	0	0	32	4	11.11	-	-	-	C	26727696	G	C	26727696	3	2	677	1	0	0	0	0	1	0	0	0	14733	942	33	2	135	2	SLC46A1	17	26727696	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	21291458	26727696	54467514	543	58609										
FOXN1	0	genome.wustl.edu	37	chr17	26862049	26862049	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctgcgggcccagccaggcaCcccccaggactcgcctctgc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	26862049	26862049	C	-	DEL	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	frame_shift_del	c.1460	p.Q489fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	16	0	0	8	5	38.46	-	-	-	-	26862049	C	-	26862049	7	5	677	1	0	1	0	1	0	0	0	0	6067	507	18	0	1486	0	FOXN1	17	26862049	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	134353	26862049	54333161	544	58610										
NF1	0	genome.wustl.edu	37	chr17	29483062	29483062	+	Frame_Shift_Del	DEL	A	A	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagtactgagcacaacaaggAatgtctaatcaatatttcca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	29483062	29483062	A	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_del	c.122	p.E41fs	1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	79	0	0	45	17	25.76	-	-	-	-	29483062	A	-	29483062	7	5	677	1	0	1	0	1	0	0	0	0	10428	246	9	0	128	0	NF1	17	29483062	Frame_Shift_Del	DEL	A	TCGA-D8-A1J8-01A-11D-A13L-09	2621013	29483062	51712148	545	58611										
CCT6B	0	genome.wustl.edu	37	chr17	33259455	33259455	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctcttccttttatactgttCttatatgtaacaagagcttc	5	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	33259455	33259455	C	T	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	silent	c.1278	p.K426	0.998	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	109	0	0	36	51	58.62	-	-	-	T	33259455	C	T	33259455	2	4	677	1	0	0	0	0	0	0	0	1	2987	912	32	2		2	CCT6B	17	33259455	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3776393	33259455	47935755	546	58612										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40647143	40647143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catctacaatgattgcttttCcaagtctcttaatatctttg	4	9	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	40647143	40647143	C	T	SNP	ATP6V0A1	ENST00000264649	human	ensembl	69_37n	1	known	missense	c.1427	p.S476F	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	158	0	0	93	62	40	-	-	-	T	40647143	C	T	40647143	3	4	677	1	0	0	0	0	1	0	0	0	1172	855	30	2	1473	2	ATP6V0A1	17	40647143	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7387688	40647143	40548067	547	58613										
RUNDC1	0	genome.wustl.edu	37	chr17	41139393	41139393	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctatcaagagggcagttatGactcgctgccacagtccgtg	11	12	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	41139393	41139393	G	A	SNP	RUNDC1	ENST00000361677	human	ensembl	69_37n	1	known	missense	c.619	p.D207N	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863	66	0	0	20	29	59.18	-	-	-	A	41139393	G	A	41139393	3	1	677	1	0	0	0	0	1	0	0	0	13828	1290	45	2	625	2	RUNDC1	17	41139393	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	492250	41139393	40055817	548	58614										
UBTF	0	genome.wustl.edu	37	chr17	42284729	42284729	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtcttcgtcctcgtcatcctCttcattctggggggtgagaa	11	11	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	42284729	42284729	C	G	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	missense	c.2176	p.E726Q	0.999	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	130	1	0.76	57	59	50.86	-	-	-	G	42284729	C	G	42284729	3	3	677	1	0	0	0	0	1	0	0	0	17006	922	32	2	122	2	UBTF	17	42284729	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1145336	42284729	38910481	549	58615										
CDC27	0	genome.wustl.edu	37	chr17	45214547	45214547	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	taatgtctaggattgactctGatagcatttcgaaaacaagc	8	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	45214547	45214547	G	A	SNP	CDC27	ENST00000571643	human	ensembl	69_37n	-1	putative	nonsense	c.64	p.Q22*	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDC27	HGNC	ENSG00000004897	82	0	0	92	22	19.3	-	-	-	A	45214547	G	A	45214547	4	1	677	1	0	0	0	0	0	1	0	0	3095	1280	45	2	614	2	CDC27	17	45214547	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2929818	45214547	35980663	550	58616										
KPNB1	0	genome.wustl.edu	37	chr17	45734337	45734337	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtggccagaactcattcctCagctggtggccaatgtcaca	10	12	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	45734337	45734337	C	A	SNP	KPNB1	ENST00000582097	human	ensembl	69_37n	1	novel	nonsense	c.47	p.S16*	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_HEAT_type_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KPNB1	HGNC	ENSG00000108424	183	0	0	64	93	59.24	-	-	-	A	45734337	C	A	45734337	4	1	677	1	0	0	0	0	0	1	0	0	8488	827	29	2	408	2	KPNB1	17	45734337	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	519790	45734337	35460873	551	58617										
MED13	0	genome.wustl.edu	37	chr17	60033733	60033733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgaccaatccttcctagacGaccaattacaactctccatg	4	14	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	60033733	60033733	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.5590	p.R1864C	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	133	0	0	98	21	17.65	-	-	-	A	60033733	G	A	60033733	3	1	677	1	0	0	0	0	1	0	0	0	9501	1058	37	1	962	1	MED13	17	60033733	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	14299396	60033733	21161477	552	58618										
MED13	0	genome.wustl.edu	37	chr17	60050231	60050231	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcattcgaagtatatcctgtGagcactgcatactcacatct	7	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	60050231	60050231	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.3824	p.S1275L	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	109	0	0	46	34	42.5	-	-	-	A	60050231	G	A	60050231	3	1	677	1	0	0	0	0	1	0	0	0	9501	1294	45	2	2756	2	MED13	17	60050231	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	16498	60050231	21144979	553	58619										
PSMD12	0	genome.wustl.edu	37	chr17	65341877	65341877	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttacttgtatttgggaatttCttctaacttcttgtcaccac	5	9	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	65341877	65341877	C	G	SNP	PSMD12	ENST00000356126	human	ensembl	69_37n	-1	known	missense	c.892	p.E298Q	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170	194	0	0	92	93	50.27	-	-	-	G	65341877	C	G	65341877	3	3	677	1	0	0	0	0	1	0	0	0	12775	922	32	2	494	2	PSMD12	17	65341877	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	5291646	65341877	15853333	554	58620										
SDK2	0	genome.wustl.edu	37	chr17	71431698	71431698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccgctgatctgcaggcccccGtcgttgcgctgccggaagcg	14	16	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	71431698	71431698	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	silent	c.1086	p.D362	0.467	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	45	0	0	6	7	53.85	-	-	-	A	71431698	G	A	71431698	2	1	677	1	0	0	0	0	0	0	0	1	14057	1136	40	1		1	SDK2	17	71431698	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6089821	71431698	9763512	555	58621										
KIF19	0	genome.wustl.edu	37	chr17	72346876	72346876	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gagaagtcccgccgggccctCaaatggcgggaggagcagcg	17	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	72346876	72346876	C	G	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	silent	c.1419	p.L473	0.989	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	25	0	0	5	6	54.55	-	-	-	G	72346876	C	G	72346876	2	3	677	1	0	0	0	0	0	0	0	1	8334	813	29	2		2	KIF19	17	72346876	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	915178	72346876	8848334	556	58622										
TSEN54	0	genome.wustl.edu	37	chr17	73517571	73517571	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatggagatggcaagagaaaGaggagcagctccagccctcg	15	9	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	73517571	73517571	G	C	SNP	TSEN54	ENST00000333213	human	ensembl	69_37n	1	known	missense	c.603	p.K201N	1.000	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173	97	0	0	21	18	46.15	-	-	-	C	73517571	G	C	73517571	3	2	677	1	0	0	0	0	1	0	0	0	16710	933	33	2	629	2	TSEN54	17	73517571	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1170695	73517571	7677639	557	58623										
UNK	0	genome.wustl.edu	37	chr17	73818686	73818686	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gacttcggcaagagctggatGaagccaacagcaccatcaag	11	11	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	73818686	73818686	G	A	SNP	UNK	ENST00000293218	human	ensembl	69_37n	1	known	missense	c.2194	p.E732K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478	65	0	0	10	11	52.38	-	-	-	A	73818686	G	A	73818686	3	1	677	1	0	0	0	0	1	0	0	0	17097	1291	45	2	2252	2	UNK	17	73818686	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	301115	73818686	7376524	558	58624										
FBF1	0	genome.wustl.edu	37	chr17	73917561	73917561	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caaaaaacaaaccagtggctGagaggtctccaggggctgtt	12	9	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	73917561	73917561	G	A	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.1565	p.S522L	0.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	39	0	0	8	14	63.64	-	-	-	A	73917561	G	A	73917561	3	1	677	1	0	0	0	0	1	0	0	0	5741	1294	45	2	1899	2	FBF1	17	73917561	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	98875	73917561	7277649	559	58625										
RPTOR	0	genome.wustl.edu	37	chr17	78931483	78931483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcctcatgagctcaggagacGtgcggatcgtccggatctgg	14	11	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	17	78931483	78931483	G	A	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.3430	p.V1144M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	73	0	0	23	15	39.47	-	-	-	A	78931483	G	A	78931483	3	1	677	1	0	0	0	0	1	0	0	0	13751	1145	40	1	3544	1	RPTOR	17	78931483	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5013922	78931483	2263727	560	58626										
MYOM1	0	genome.wustl.edu	37	chr18	3164315	3164315	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actatattgttcataatattCtcccatccgtacacggattg	5	10	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	3164315	3164315	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.1462	p.E488K	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	98	0	0	34	37	52.11	-	-	-	T	3164315	C	T	3164315	3	4	677	1	0	0	0	0	1	0	0	0	10163	922	32	2	3711	2	MYOM1	18	3164315	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		3164315	74912933	561	58627										
PTPRM	0	genome.wustl.edu	37	chr18	7888192	7888192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttaaagaaaatgacacccaCtgcatcgattttcactattt	4	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	7888192	7888192	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	silent	c.285	p.H95	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	140	0	0	49	56	53.33	-	-	-	T	7888192	C	T	7888192	2	4	677	1	0	0	0	0	0	0	0	1	12889	564	20	4		4	PTPRM	18	7888192	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4723877	7888192	70189056	562	58628										
HRH4	0	genome.wustl.edu	37	chr18	22057345	22057345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgtcctttcattttattcctCagcaacaggtcctaaatcag	5	11	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	22057345	22057345	C	T	SNP	HRH4	ENST00000256906	human	ensembl	69_37n	1	known	missense	c.992	p.S331L	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Histamine_H4_recept,prints_7TM_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489	264	0	0	93	108	53.73	-	-	-	T	22057345	C	T	22057345	3	4	677	1	0	0	0	0	1	0	0	0	7409	838	29	2	1002	2	HRH4	18	22057345	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	14169153	22057345	56019903	563	58629										
FAM59A	0	genome.wustl.edu	37	chr18	29848284	29848284	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccactagttttggagccctGgggggtaaggcagggcatga							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	29848284	29848284	G	-	DEL	FAM59A	ENST00000269209	human	ensembl	69_37n	-1	known	frame_shift_del	c.2181	p.R728fs	0.927	NULL	superfamily_SAM/pointed	-	no_errors	FAM59A	HGNC	ENSG00000141441	84	0	0	22	21	46.67	-	-	-	-	29848284	G	-	29848284	7	5	677	1	0	1	0	1	0	0	0	0	5637	1335	47	0	453	0	FAM59A	18	29848284	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	7790939	29848284	48228964	564	58630										
MOCOS	0	genome.wustl.edu	37	chr18	33795621	33795621	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agacactcgcctgcactcatCaggggactggcctgtccctc	10	16	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	33795621	33795621	C	T	SNP	MOCOS	ENST00000261326	human	ensembl	69_37n	1	known	missense	c.1478	p.S493L	0.001	NULL	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	60	0	0	15	30	66.67	-	-	-	T	33795621	C	T	33795621	3	4	677	1	0	0	0	0	1	0	0	0	9761	838	29	2	1508	2	MOCOS	18	33795621	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3947337	33795621	44281627	565	58631										
RIT2	0	genome.wustl.edu	37	chr18	40503615	40503615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtgtggcggacctgaaaaatGagctctttaaacttggcagc	12	8	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	40503615	40503615	G	A	SNP	RIT2	ENST00000590910	human	ensembl	69_37n	-1	novel	missense	c.410	p.S137L	1.000	smart_Small_GTPase_Ras	pfam_Small_GTPase,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT2	HGNC	ENSG00000152214	49	0	0	32	26	44.83	-	-	-	A	40503615	G	A	40503615	3	1	677	1	0	0	0	0	1	0	0	0	13473	1277	45	2	313	2	RIT2	18	40503615	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	6707994	40503615	37573633	566	58632										
SETBP1	0	genome.wustl.edu	37	chr18	42532585	42532585	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggccaacagtgccaccacctCagttccacacaaactcccac	5	19	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	42532585	42532585	C	G	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.3280	p.Q1094E	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	84	0	0	23	27	54	-	-	-	G	42532585	C	G	42532585	3	3	677	1	0	0	0	0	1	0	0	0	14217	827	29	2	3483	2	SETBP1	18	42532585	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2028970	42532585	35544663	567	58633										
ZBTB7C	0	genome.wustl.edu	37	chr18	45567085	45567085	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtcatcctcctcccccccgtCccccccaggctccatgatct							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	45567085	45567085	C	-	DEL	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	frame_shift_del	c.394	p.D132fs	0.050	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	189	0	0	80	52	37.68	-	-	-	-	45567085	C	-	45567085	7	5	677	1	0	1	0	1	0	0	0	0	17651	855	30	0	1473	0	ZBTB7C	18	45567085	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09	3034500	45567085	32510163	568	58634										
ME2	0	genome.wustl.edu	37	chr18	48473521	48473521	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gatgtgtatgaatggccagaAtctgcatcaagccctcctgt	10	10	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	48473521	48473521	A	T	SNP	ME2	ENST00000321341	human	ensembl	69_37n	1	known	missense	c.1722	p.E574D	0.000	NULL	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	93	0	0	28	28	50	-	-	-	T	48473521	A	T	48473521	3	4	677	1	0	0	0	0	1	0	0	0	9489	98	4	5	1780	5	ME2	18	48473521	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	2906436	48473521	29603727	569	58635										
ONECUT2	0	genome.wustl.edu	37	chr18	55103687	55103687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaacgcgcagcagagtctgCccaactacggtccgccgggc	12	16	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	55103687	55103687	C	T	SNP	ONECUT2	ENST00000262095	human	ensembl	69_37n	1	known	missense	c.739	p.P247S	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547	32	0	0	8	6	42.86	-	-	-	T	55103687	C	T	55103687	3	4	677	1	0	0	0	0	1	0	0	0	10942	739	26	4	741	4	ONECUT2	18	55103687	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6630166	55103687	22973561	570	58636										
SERPINB4	0	genome.wustl.edu	37	chr18	61305175	61305175	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gagagaccgtggctccaggtCatgcctgagaggtctgcatc	14	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	61305175	61305175	C	T	SNP	SERPINB4	ENST00000341074	human	ensembl	69_37n	-1	known	missense	c.951	p.M317I	0.998	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB4	HGNC	ENSG00000206073	115	0	0	50	50	50	-	-	-	T	61305175	C	T	61305175	3	4	677	1	0	0	0	0	1	0	0	0	14191	826	29	2	225	2	SERPINB4	18	61305175	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	6201488	61305175	16772073	571	58637										
SERPINB3	0	genome.wustl.edu	37	chr18	61325785	61325785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cccaggagttaatcttctttCgactttcttctggagcattt	7	10	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	61325785	61325785	C	T	SNP	SERPINB3	ENST00000283752	human	ensembl	69_37n	-1	known	missense	c.431	p.R144Q	0.015	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149	221	0	0	108	100	48.08	-	-	-	T	61325785	C	T	61325785	3	4	677	1	0	0	0	0	1	0	0	0	14190	884	31	1	757	1	SERPINB3	18	61325785	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	20610	61325785	16751463	572	58638										
TMX3	0	genome.wustl.edu	37	chr18	66354978	66354978	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acctttccctgttgatccatGatgacagatcaccatcttca	5	13	3	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	66354978	66354978	G	A	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	missense	c.662	p.S221L	0.951	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	91	0	0	23	32	58.18	-	-	-	A	66354978	G	A	66354978	3	1	677	1	0	0	0	0	1	0	0	0	16363	1294	45	2	730	2	TMX3	18	66354978	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5029193	66354978	11722270	573	58639										
ADNP2	0	genome.wustl.edu	37	chr18	77893955	77893955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caaatattactgtaaaaagtGcaacgccaatgccagcagcc	7	11	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	18	77893955	77893955	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	missense	c.659	p.C220Y	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	70	0	0	38	14	26.92	-	-	-	A	77893955	G	A	77893955	3	1	677	1	0	0	0	0	1	0	0	0	324	1319	46	4	669	4	ADNP2	18	77893955	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	11538977	77893955	183293	574	58640										
MKNK2	0	genome.wustl.edu	37	chr19	2039659	2039659	+	Frame_Shift_Del	DEL	C	C	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggggccgaggacagactggCcctttgccgccgctgcgcca							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	2039659	2039659	C	-	DEL	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	frame_shift_del	c.1351	p.A451fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	39	0	0	9	2	18.18	-	-	-	-	2039659	C	-	2039659	7	5	677	1	0	1	0	1	0	0	0	0	9676	739	26	0	145	0	MKNK2	19	2039659	Frame_Shift_Del	DEL	C	TCGA-D8-A1J8-01A-11D-A13L-09		2039659	57089324	575	58641										
PIAS4	0	genome.wustl.edu	37	chr19	4028789	4028789	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cccatcaacctcacccacctCatgtacctgtcctcggccac	4	21	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	4028789	4028789	C	T	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	1	known	silent	c.744	p.L248	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	88	0	0	12	7	36.84	-	-	-	T	4028789	C	T	4028789	2	4	677	1	0	0	0	0	0	0	0	1	11952	813	29	2		2	PIAS4	19	4028789	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1989130	4028789	55100194	576	58642										
FBN3	0	genome.wustl.edu	37	chr19	8174578	8174578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcagctgcagaggtagctgcCgggggtgttaatgcacacgc	16	10	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	8174578	8174578	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.4393	p.G1465S	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	38	0	0	11	6	35.29	-	-	-	T	8174578	C	T	8174578	3	4	677	1	0	0	0	0	1	0	0	0	5750	652	23	1	4156	1	FBN3	19	8174578	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4145789	8174578	50954405	577	58643										
MUC16	0	genome.wustl.edu	37	chr19	9046939	9046939	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggttcatatggggtctcactCaatgttgggaaggttgtact	13	6	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	9046939	9046939	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.34692	p.L11564	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	216	0	0	178	103	36.65	-	-	-	T	9046939	C	T	9046939	2	4	677	1	0	0	0	0	0	0	0	1	10045	825	29	2		2	MUC16	19	9046939	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	872361	9046939	50082044	578	58644										
ZNF799	0	genome.wustl.edu	37	chr19	12502762	12502762	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgaagtgagttgtggtaactGaaggctttcccacgttgttt	12	6	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	12502762	12502762	G	A	SNP	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	silent	c.450	p.F150	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	277	0	0	301	107	26.23	-	-	-	A	12502762	G	A	12502762	2	1	677	1	0	0	0	0	0	0	0	1	18259	1281	45	2		2	ZNF799	19	12502762	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3455823	12502762	46626221	579	58645										
HOOK2	0	genome.wustl.edu	37	chr19	12881762	12881762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcaccgtagttcatccatctCatccttcagggcctgtgcct	7	15	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	12881762	12881762	C	T	SNP	HOOK2	ENST00000397668	human	ensembl	69_37n	-1	known	missense	c.886	p.E296K	1.000	pfam_HOOK	pfam_HOOK,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066	48	0	0	18	10	35.71	-	-	-	T	12881762	C	T	12881762	3	4	677	1	0	0	0	0	1	0	0	0	7334	835	29	2	1329	2	HOOK2	19	12881762	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	379000	12881762	46247221	580	58646										
SLC1A6	0	genome.wustl.edu	37	chr19	15083567	15083567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgaaggcgtttcggcgcagGaagcgcagcacgtgctcgag	16	10	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	15083567	15083567	G	A	SNP	SLC1A6	ENST00000430939	human	ensembl	69_37n	-1	known	missense	c.169	p.P57S	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	35	0	0	23	9	28.12	-	-	-	A	15083567	G	A	15083567	3	1	677	1	0	0	0	0	1	0	0	0	14525	1165	41	2	1574	2	SLC1A6	19	15083567	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2201805	15083567	44045416	581	58647										
CALR3	0	genome.wustl.edu	37	chr19	16601239	16601239	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggtcaatgtctgcaggaaaGaccttaatgtagccccctcc	9	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	16601239	16601239	G	C	SNP	CALR3	ENST00000269881	human	ensembl	69_37n	-1	known	silent	c.336	p.V112	0.823	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,pirsf_Calreticulin,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000141979	140	0	0	85	56	39.72	-	-	-	C	16601239	G	C	16601239	2	2	677	1	0	0	0	0	0	0	0	1	2618	929	33	2		2	CALR3	19	16601239	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1517672	16601239	42527744	582	58648										
PLVAP	0	genome.wustl.edu	37	chr19	17487862	17487862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggtcaagttggactgggagGccgtgagccctaggagctga	17	8	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	17487862	17487862	G	A	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	missense	c.236	p.A79V	0.245	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300	105	0	0	80	36	31.03	-	-	-	A	17487862	G	A	17487862	3	1	677	1	0	0	0	0	1	0	0	0	12190	1203	42	4	1116	4	PLVAP	19	17487862	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	886623	17487862	41641121	583	58649										
MAP1S	0	genome.wustl.edu	37	chr19	17844161	17844161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgtcatcagtggccaggaccAgcgcaaggaggaaggcatgc	15	11	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	17844161	17844161	A	G	SNP	MAP1S	ENST00000324096	human	ensembl	69_37n	1	known	missense	c.2948	p.Q983R	0.294	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479	41	0	0	9	8	44.44	-	-	-	G	17844161	A	G	17844161	3	3	677	1	0	0	0	0	1	0	0	0	9305	188	7	5	2970	5	MAP1S	19	17844161	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	356299	17844161	41284822	584	58650										
FKBP8	0	genome.wustl.edu	37	chr19	18652634	18652634	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccagcggtggcagctcactCaggtcatcctcttcctcctc	8	17	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	18652634	18652634	C	G	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	silent	c.234	p.L78	1.000	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	47	0	0	18	9	33.33	-	-	-	G	18652634	C	G	18652634	2	3	677	1	0	0	0	0	0	0	0	1	5960	813	29	2		2	FKBP8	19	18652634	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	808473	18652634	40476349	585	58651										
FKBP8	0	genome.wustl.edu	37	chr19	18652687	18652687	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcctcctcaccctctgcatCctcaaccccatccagtacct	2	21	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	18652687	18652687	C	G	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.181	p.D61H	0.951	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	52	0	0	23	9	28.12	-	-	-	G	18652687	C	G	18652687	3	3	677	1	0	0	0	0	1	0	0	0	5960	855	30	2	1179	2	FKBP8	19	18652687	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	53	18652687	40476296	586	58652										
ATP13A1	0	genome.wustl.edu	37	chr19	19767527	19767527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgtctacgatgcagcggcctCgcagcagaagcacgtcacat	11	14	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	19767527	19767527	C	T	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342Q	0.998	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	54	0	0	28	15	34.88	-	-	-	T	19767527	C	T	19767527	3	4	677	1	0	0	0	0	1	0	0	0	1127	884	31	1	2669	1	ATP13A1	19	19767527	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1114840	19767527	39361456	587	58653										
UBA2	0	genome.wustl.edu	37	chr19	34941194	34941194	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttaaagatgacatcaggtatCtgttgacaatggacaaacta	8	6	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	34941194	34941194	C	A	SNP	UBA2	ENST00000246548	human	ensembl	69_37n	1	known	missense	c.796	p.L266M	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261	104	0	0	107	51	32.28	-	-	-	A	34941194	C	A	34941194	3	1	677	1	0	0	0	0	1	0	0	0	16925	912	32	2	830	2	UBA2	19	34941194	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	15173667	34941194	24187789	588	58654										
CLIP3	0	genome.wustl.edu	37	chr19	36515355	36515355	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagcccagtgcgctaagcatGagattgcctgggacgttgtc	13	10	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	36515355	36515355	G	C	SNP	CLIP3	ENST00000360535	human	ensembl	69_37n	-1	known	silent	c.861	p.L287	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270	81	0	0	18	12	40	-	-	-	C	36515355	G	C	36515355	2	2	677	1	0	0	0	0	0	0	0	1	3564	1277	45	2		2	CLIP3	19	36515355	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1574161	36515355	22613628	589	58655										
ZNF382	0	genome.wustl.edu	37	chr19	37118075	37118075	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaagacaaccctcactgttCatcagagaactcacacagga	7	12	4	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	37118075	37118075	C	T	SNP	ZNF382	ENST00000292928	human	ensembl	69_37n	1	known	missense	c.1276	p.H426Y	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298	49	0	0	85	25	22.73	-	-	-	T	37118075	C	T	37118075	3	4	677	1	0	0	0	0	1	0	0	0	17969	826	29	2	1286	2	ZNF382	19	37118075	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	602720	37118075	22010908	590	58656										
ZNF829	0	genome.wustl.edu	37	chr19	37382414	37382414	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcaaccagtatgaattccctCatggcgaatgaggtcagagc	10	10	3	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	37382414	37382414	C	T	SNP	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	missense	c.1522	p.E508K	0.948	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	51	0	0	56	49	46.67	-	-	-	T	37382414	C	T	37382414	3	4	677	1	0	0	0	0	1	0	0	0	18275	835	29	2	23	2	ZNF829	19	37382414	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	264339	37382414	21746569	591	58657										
ZNF568	0	genome.wustl.edu	37	chr19	37488357	37488357	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caaaaagttcacactggggaGagaccccataagtgtaagga	11	8	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	37488357	37488357	G	A	SNP	ZNF568	ENST00000455427	human	ensembl	69_37n	1	known	silent	c.1572	p.E524	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	9	0	0	19	20	51.28	-	-	-	A	37488357	G	A	37488357	2	1	677	1	0	0	0	0	0	0	0	1	18095	957	33	2		2	ZNF568	19	37488357	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	105943	37488357	21640626	592	58658										
HKR1	0	genome.wustl.edu	37	chr19	37853022	37853022	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttcagcagaatcgaagccaGaaattcaacttagtccctcc	6	13	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	37853022	37853022	G	C	SNP	HKR1	ENST00000324411	human	ensembl	69_37n	1	known	missense	c.325	p.E109Q	0.110	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666	61	0	0	44	31	41.33	-	-	-	C	37853022	G	C	37853022	3	2	677	1	0	0	0	0	1	0	0	0	7245	943	33	2	339	2	HKR1	19	37853022	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	364665	37853022	21275961	593	58659										
CATSPERG	0	genome.wustl.edu	37	chr19	38853115	38853115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acaacctcgagtccgcgtacGagctgccggagcgcattttc	11	14	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	38853115	38853115	G	A	SNP	CATSPERG	ENST00000409235	human	ensembl	69_37n	1	known	missense	c.2257	p.E753K	0.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	31	0	0	38	10	20.83	-	-	-	A	38853115	G	A	38853115	3	1	677	1	0	0	0	0	1	0	0	0	2717	1059	37	1	2327	1	CATSPERG	19	38853115	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1000093	38853115	20275868	594	58660										
PLEKHG2	0	genome.wustl.edu	37	chr19	39913648	39913648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccagccgctgtgaaattcccGaaggttctcgccttcctagt	9	14	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	39913648	39913648	G	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.1954	p.E652K	0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	35	0	0	20	8	28.57	-	-	-	A	39913648	G	A	39913648	3	1	677	1	0	0	0	0	1	0	0	0	12143	1059	37	1	2020	1	PLEKHG2	19	39913648	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1060533	39913648	19215335	595	58661										
ZNF780A	0	genome.wustl.edu	37	chr19	40581230	40581230	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttatggcgattaagctggttGagaagactaaaggccttccc	11	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	40581230	40581230	G	A	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	silent	c.1122	p.L374	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	116	0	0	135	68	33.5	-	-	-	A	40581230	G	A	40581230	2	1	677	1	0	0	0	0	0	0	0	1	18245	1277	45	2		2	ZNF780A	19	40581230	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	667582	40581230	18547753	596	58662										
PRX	0	genome.wustl.edu	37	chr19	40900900	40900900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcaggcctgacagctgcattCcactgacggccacagccccc	9	18	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	40900900	40900900	C	T	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	missense	c.3359	p.G1120E	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	34	0	0	6	6	50	-	-	-	T	40900900	C	T	40900900	3	4	677	1	0	0	0	0	1	0	0	0	12722	855	30	2	1030	2	PRX	19	40900900	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	319670	40900900	18228083	597	58663										
SPTBN4	0	genome.wustl.edu	37	chr19	41019290	41019290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agcagagcagttgttcgctgAggtgaccgaagtggcggcgc	17	9	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	41019290	41019290	A	G	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.2594	p.E865G	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	29	0	0	9	4	30.77	-	-	-	G	41019290	A	G	41019290	3	3	677	1	0	0	0	0	1	0	0	0	15212	304	11	5	2644	5	SPTBN4	19	41019290	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	118390	41019290	18109693	598	58664										
CEACAM4	0	genome.wustl.edu	37	chr19	42126606	42126606	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agaaggtggatctgtgagagGgaccatggcctggggacaga	18	6	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	42126606	42126606	G	T	SNP	CEACAM4	ENST00000221954	human	ensembl	69_37n	-1	known	missense	c.605	p.P202H	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	CEACAM4	HGNC	ENSG00000105352	113	1	0.88	25	15	37.5	-	-	-	T	42126606	G	T	42126606	3	4	677	1	0	0	0	0	1	0	0	0	3223	1232	43	4	141	4	CEACAM4	19	42126606	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1107316	42126606	17002377	599	58665										
ARHGEF1	0	genome.wustl.edu	37	chr19	42409363	42409363	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	actgagactgccggatccctGaaagtccctgcccctgcctc	9	17	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	42409363	42409363	G	A	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	silent	c.2232	p.L744	1.000	smart_Pleckstrin_homology	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	54	0	0	33	23	41.07	-	-	-	A	42409363	G	A	42409363	2	1	677	1	0	0	0	0	0	0	0	1	895	1277	45	2		2	ARHGEF1	19	42409363	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	282757	42409363	16719620	600	58666										
PSG2	0	genome.wustl.edu	37	chr19	43585326	43585326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaagaacatccttcccctcgGaaacttttggtggctgggct	11	11	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	43585326	43585326	G	A	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	missense	c.137	p.S46F	0.004	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG2	HGNC	ENSG00000242221	175	0	0	60	86	58.9	-	-	-	A	43585326	G	A	43585326	3	1	677	1	0	0	0	0	1	0	0	0	12735	1174	41	2	886	2	PSG2	19	43585326	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1175963	43585326	15543657	601	58667										
PRKD2	0	genome.wustl.edu	37	chr19	47192823	47192823	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaggaacttggtgaggcgctCaggcagccggcccttctcac	14	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	47192823	47192823	C	T	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1942	p.E648K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	113	0	0	70	38	35.19	-	-	-	T	47192823	C	T	47192823	3	4	677	1	0	0	0	0	1	0	0	0	12600	835	29	2	714	2	PRKD2	19	47192823	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3607497	47192823	11936160	602	58668										
GLTSCR1	0	genome.wustl.edu	37	chr19	48198190	48198190	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcatcctccagaacaaggctGggggggcccctgccgccccg							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	48198190	48198190	G	-	DEL	GLTSCR1	ENST00000396720	human	ensembl	69_37n	1	known	frame_shift_del	c.2929	p.A979fs	0.010	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169	36	0	0	4	3	37.5	-	-	-	-	48198190	G	-	48198190	7	5	677	1	0	1	0	1	0	0	0	0	6526	1348	47	0	2955	0	GLTSCR1	19	48198190	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	1005367	48198190	10930793	603	58669										
IZUMO1	0	genome.wustl.edu	37	chr19	49249107	49249107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgcacacaggagggtaaaatGcggccccattgcagccggcg	14	13	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	49249107	49249107	G	A	SNP	IZUMO1	ENST00000332955	human	ensembl	69_37n	-1	known	missense	c.10	p.H4Y	0.000	NULL	NULL	-	no_errors	IZUMO1	HGNC	ENSG00000182264	43	0	0	36	20	35.71	-	-	-	A	49249107	G	A	49249107	3	1	677	1	0	0	0	0	1	0	0	0	7987	1319	46	4	1078	4	IZUMO1	19	49249107	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1050917	49249107	9879876	604	58670										
RPL13A	0	genome.wustl.edu	37	chr19	49994349	49994349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtcgtgcgtctgaagcctaCaagaaaggtgagtcccagct	13	10	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	49994349	49994349	C	T	SNP	RPL13A	ENST00000391857	human	ensembl	69_37n	1	known	missense	c.395	p.T132I	0.948	superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541	50	0	0	32	16	33.33	-	-	-	T	49994349	C	T	49994349	3	4	677	1	0	0	0	0	1	0	0	0	13646	478	17	4	417	4	RPL13A	19	49994349	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	745242	49994349	9134634	605	58671										
CPT1C	0	genome.wustl.edu	37	chr19	50215134	50215134	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gctctgctgaaggcagccatGagcgggcagggagttgaccg	17	10	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	50215134	50215134	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.1935	p.M645I	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	86	0	0	36	14	28	-	-	-	A	50215134	G	A	50215134	3	1	677	1	0	0	0	0	1	0	0	0	3863	1290	45	2	1993	2	CPT1C	19	50215134	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	220785	50215134	8913849	606	58672										
PNKP	0	genome.wustl.edu	37	chr19	50367244	50367244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaggggacccccagcttctCcaccacagcctccaccttgg	9	18	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	50367244	50367244	C	G	SNP	PNKP	ENST00000322344	human	ensembl	69_37n	-1	known	missense	c.721	p.E241Q	1.000	pfam_PNK3P,superfamily_HAD-like_dom,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	68	0	0	26	15	36.59	-	-	-	G	50367244	C	G	50367244	3	3	677	1	0	0	0	0	1	0	0	0	12221	864	30	2	888	2	PNKP	19	50367244	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	152110	50367244	8761739	607	58673										
MYBPC2	0	genome.wustl.edu	37	chr19	50954182	50954182	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgtcgctctcggccaagctCaacttcctgggtgaggatgc	12	13	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	50954182	50954182	C	T	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	silent	c.1569	p.L523	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	38	0	0	46	14	23.33	-	-	-	T	50954182	C	T	50954182	2	4	677	1	0	0	0	0	0	0	0	1	10084	813	29	2		2	MYBPC2	19	50954182	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	586938	50954182	8174801	608	58674										
ZNF616	0	genome.wustl.edu	37	chr19	52618995	52618995	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcaagtcgtgaatgtatgctGaaaactttgccacattcatt	8	8	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	52618995	52618995	G	A	SNP	ZNF616	ENST00000330123	human	ensembl	69_37n	-1	known	silent	c.1422	p.F474	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	121	0	0	172	50	22.52	-	-	-	A	52618995	G	A	52618995	2	1	677	1	0	0	0	0	0	0	0	1	18137	1281	45	2		2	ZNF616	19	52618995	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1664813	52618995	6509988	609	58675										
ZNF845	0	genome.wustl.edu	37	chr19	53856140	53856140	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtcatcccttacatgccatCttagacttcatactggagag	7	11	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	53856140	53856140	C	G	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.2212	p.L738V	0.266	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	88	0	0	179	90	33.46	-	-	-	G	53856140	C	G	53856140	3	3	677	1	0	0	0	0	1	0	0	0	18284	913	32	2	2222	2	ZNF845	19	53856140	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1237145	53856140	5272843	610	58676										
ZNF845	0	genome.wustl.edu	37	chr19	53856158	53856158	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcttagacttcatactggaGagaaaccttacaaatgtgaa	7	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	53856158	53856158	G	A	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.2230	p.E744K	0.816	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	95	0	0	166	99	37.36	-	-	-	A	53856158	G	A	53856158	3	1	677	1	0	0	0	0	1	0	0	0	18284	943	33	2	2240	2	ZNF845	19	53856158	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	18	53856158	5272825	611	58677										
ZNF765	0	genome.wustl.edu	37	chr19	53912082	53912082	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaccttcaatcagcagttaaCccttaacatttgtagacttc	5	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	53912082	53912082	C	G	SNP	ZNF765	ENST00000396408	human	ensembl	69_37n	1	known	missense	c.1274	p.T425S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417	66	0	0	126	66	34.38	-	-	-	G	53912082	C	G	53912082	3	3	677	1	0	0	0	0	1	0	0	0	18233	507	18	4	1284	4	ZNF765	19	53912082	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	55924	53912082	5216901	612	58678										
CNOT3	0	genome.wustl.edu	37	chr19	54647843	54647843	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtagatcctgcccagaaggaGaaggaagaggttggccagtg	16	7	0	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	54647843	54647843	G	A	SNP	CNOT3	ENST00000447684	human	ensembl	69_37n	1	known	missense	c.115	p.E39K	1.000	pfam_Not_N	pfam_Not_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNOT3	HGNC	ENSG00000088038	142	0	0	80	27	25.23	-	-	-	A	54647843	G	A	54647843	3	1	677	1	0	0	0	0	1	0	0	0	3650	933	33	2	378	2	CNOT3	19	54647843	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	735761	54647843	4481140	613	58679										
LENG1	0	genome.wustl.edu	37	chr19	54663378	54663378	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gggcctcgtcacgccgcacgCgggcgacattgtccttgttc	13	15	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	54663378	54663378	C	G	SNP	LENG1	ENST00000222224	human	ensembl	69_37n	-1	known	missense	c.56	p.R19P	1.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617	33	0	0	13	10	43.48	-	-	-	G	54663378	C	G	54663378	3	3	677	1	0	0	0	0	1	0	0	0	8777	768	27	3	754	3	LENG1	19	54663378	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	15535	54663378	4465605	614	58680										
MBOAT7	0	genome.wustl.edu	37	chr19	54677970	54677970	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcaggaaccagtgcacccagTcccaggccttctggccccct	9	18	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	54677970	54677970	T	C	SNP	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	missense	c.1187	p.D396G	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	63	0	0	29	15	34.09	-	-	-	C	54677970	T	C	54677970	3	2	677	1	0	0	0	0	1	0	0	0	9429	1667	58	5	235	5	MBOAT7	19	54677970	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	14592	54677970	4451013	615	58681										
NLRP9	0	genome.wustl.edu	37	chr19	56223333	56223333	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cgggtgatcggacacgtttgCagcctgcaaaagggaaacac	13	10	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	56223333	56223333	C	T	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	silent	c.2676	p.L892	0.530	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	45	0	0	31	25	44.64	-	-	-	T	56223333	C	T	56223333	2	4	677	1	0	0	0	0	0	0	0	1	10556	697	25	4		4	NLRP9	19	56223333	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1545363	56223333	2905650	616	58682										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56736086	56736086	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcctccaggtctttgcagctCtgcacaccgttcatcatgac	7	15	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	56736086	56736086	C	G	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.330	p.Q110H	0.003	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	42	0	0	32	8	20	-	-	-	G	56736086	C	G	56736086	3	3	677	1	0	0	0	0	1	0	0	0	18329	912	32	2	1176	2	ZSCAN5A	19	56736086	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	512753	56736086	2392897	617	58683										
ZFP28	0	genome.wustl.edu	37	chr19	57065152	57065152	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaacactaaacttgattgttCcagtttcagagaaaattggg	8	6	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	57065152	57065152	C	G	SNP	ZFP28	ENST00000301318	human	ensembl	69_37n	1	known	missense	c.998	p.S333C	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867	74	0	0	52	6	10.34	-	-	-	G	57065152	C	G	57065152	3	3	677	1	0	0	0	0	1	0	0	0	17738	855	30	2	1028	2	ZFP28	19	57065152	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	329066	57065152	2063831	618	58684										
ZNF135	0	genome.wustl.edu	37	chr19	58579047	58579047	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cccagatcacaccactgattCagcaccagaggacccacaca	6	17	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	19	58579047	58579047	C	T	SNP	ZNF135	ENST00000401053	human	ensembl	69_37n	1	known	nonsense	c.1267	p.Q423*	0.019	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293	74	0	0	96	70	42.17	-	-	-	T	58579047	C	T	58579047	4	4	677	1	0	0	0	0	0	1	0	0	17821	827	29	2	1398	2	ZNF135	19	58579047	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1513895	58579047	549936	619	58685										
ANGPT4	0	genome.wustl.edu	37	chr20	896631	896631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcaacttccccaggtgcagtGggttggccagtgattctctc	12	12	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	896631	896631	G	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.227	p.P76Q	0.001	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	85	0	0	43	12	21.43	-	-	-	T	896631	G	T	896631	3	4	677	1	0	0	0	0	1	0	0	0	612	1348	47	4	1320	4	ANGPT4	20	896631	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09		896631	62128889	620	58686										
C20orf194	0	genome.wustl.edu	37	chr20	3274894	3274894	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgctgctgatggcgaaatgcTggagaaacctaaaaacacaa	10	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	3274894	3274894	T	C	SNP	C20orf194	ENST00000252032	human	ensembl	69_37n	-1	known	missense	c.2129	p.Q710R	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854	68	0	0	66	16	19.28	-	-	-	C	3274894	T	C	3274894	3	2	677	1	0	0	0	0	1	0	0	0	2119	1580	55	5	1456	5	C20orf194	20	3274894	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	2378263	3274894	59750626	621	58687										
TRMT6	0	genome.wustl.edu	37	chr20	5923223	5923223	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcagaagcctgtttttcctCcagtgtgccattactttctt	6	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	5923223	5923223	C	G	SNP	TRMT6	ENST00000203001	human	ensembl	69_37n	-1	known	missense	c.877	p.E293Q	1.000	pirsf_tRNA_m1A_mtfrase	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	-	no_errors	TRMT6	HGNC	ENSG00000089195	221	0	0	224	119	34.69	-	-	-	G	5923223	C	G	5923223	3	3	677	1	0	0	0	0	1	0	0	0	16664	864	30	2	636	2	TRMT6	20	5923223	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2648329	5923223	57102297	622	58688										
MKKS	0	genome.wustl.edu	37	chr20	10393434	10393434	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccggataaagttgtacaaaaGagtgccaccttgagggcagt	12	8	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	10393434	10393434	G	A	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	silent	c.729	p.L243	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	118	0	0	103	51	33.12	-	-	-	A	10393434	G	A	10393434	2	1	677	1	0	0	0	0	0	0	0	1	9671	929	33	2		2	MKKS	20	10393434	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4470211	10393434	52632086	623	58689										
JAG1	0	genome.wustl.edu	37	chr20	10632838	10632838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aacactgatatttgtcagggCctgtgttgctacaagttccc	9	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	10632838	10632838	C	T	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.947	p.G316D	0.999	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	85	0	0	45	24	34.78	-	-	-	T	10632838	C	T	10632838	3	4	677	1	0	0	0	0	1	0	0	0	7988	739	26	4	2789	4	JAG1	20	10632838	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	239404	10632838	52392682	624	58690										
CSRP2BP	0	genome.wustl.edu	37	chr20	18123319	18123319	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaagggatggatagtagcatCcacctgagtagtctgatcag	13	7	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	18123319	18123319	C	G	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.15	p.I5M	0.970	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	40	0	0	22	20	47.62	-	-	-	G	18123319	C	G	18123319	3	3	677	1	0	0	0	0	1	0	0	0	4000	845	30	2	17	2	CSRP2BP	20	18123319	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	7490481	18123319	44902201	625	58691										
CRNKL1	0	genome.wustl.edu	37	chr20	20026080	20026080	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaaataagcatgtttttcttCaaagcgggcatacttgatcc	7	8	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	20026080	20026080	C	G	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1156	p.E386Q	1.000	pfam_HAT,smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	119	0	0	120	52	30.23	-	-	-	G	20026080	C	G	20026080	3	3	677	1	0	0	0	0	1	0	0	0	3921	835	29	2	1426	2	CRNKL1	20	20026080	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1902761	20026080	42999440	626	58692										
RALGAPA2	0	genome.wustl.edu	37	chr20	20610050	20610050	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agttgacataacctcgtgttGacaagagaatccgctgtacc	9	10	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	20610050	20610050	G	C	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	nonsense	c.1190	p.S397*	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	117	0	0	82	42	33.87	-	-	-	C	20610050	G	C	20610050	4	2	677	1	0	0	0	0	0	1	0	0	13097	1294	45	2	4551	2	RALGAPA2	20	20610050	Nonsense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	583970	20610050	42415470	627	58693										
PYGB	0	genome.wustl.edu	37	chr20	25239910	25239910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctggaattctacatgggtcGcacgctgcagaacacgatgg	12	11	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	25239910	25239910	G	A	SNP	PYGB	ENST00000216962	human	ensembl	69_37n	1	known	missense	c.281	p.R94H	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	100	0	0	59	35	37.23	-	-	-	A	25239910	G	A	25239910	3	1	677	1	0	0	0	0	1	0	0	0	12943	1087	38	1	287	1	PYGB	20	25239910	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	4629860	25239910	37785610	628	58694										
GINS1	0	genome.wustl.edu	37	chr20	25388530	25388530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agggcaactgcctgccttcaAcgtgaggggcgggtagactt	15	10	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	25388530	25388530	A	G	SNP	GINS1	ENST00000262460	human	ensembl	69_37n	1	known	missense	c.74	p.N25S	1.000	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003	34	0	0	16	5	23.81	-	-	-	G	25388530	A	G	25388530	3	3	677	1	0	0	0	0	1	0	0	0	6439	57	2	5	76	5	GINS1	20	25388530	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	148620	25388530	37636990	629	58695										
ASXL1	0	genome.wustl.edu	37	chr20	31024523	31024523	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctccagtttttcccagtggGaagttgggaccaagcacaaa	10	11	0	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	31024523	31024523	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.4008	p.G1336	0.885	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	30	0	0	19	8	29.63	-	-	-	A	31024523	G	A	31024523	2	1	677	1	0	0	0	0	0	0	0	1	1070	1161	41	2		2	ASXL1	20	31024523	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5635993	31024523	32000997	630	58696										
CEP250	0	genome.wustl.edu	37	chr20	34091186	34091186	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaccaggagctgatgctgcaGaaggagaggattcaggttct	15	7	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	34091186	34091186	G	A	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.4989	p.Q1663	0.995	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	61	0	0	27	17	38.64	-	-	-	A	34091186	G	A	34091186	2	1	677	1	0	0	0	0	0	0	0	1	3281	933	33	2		2	CEP250	20	34091186	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3066663	34091186	28934334	631	58697										
SRC	0	genome.wustl.edu	37	chr20	36026204	36026204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgggagatccctcgggagtCgctgcggctggaggtcaagc	17	11	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	36026204	36026204	C	T	SNP	SRC	ENST00000360723	human	ensembl	69_37n	1	known	missense	c.824	p.S275L	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	SRC	HGNC	ENSG00000197122	32	0	0	16	8	33.33	-	-	-	T	36026204	C	T	36026204	3	4	677	1	0	0	0	0	1	0	0	0	15225	893	31	1	828	1	SRC	20	36026204	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1935018	36026204	26999316	632	58698										
KIAA1755	0	genome.wustl.edu	37	chr20	36845798	36845798	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctctgggaactctgcacgttCtgcctccccagcccctctgg	9	18	4	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	36845798	36845798	C	T	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.2758	p.E920K	0.005	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	39	0	0	9	7	43.75	-	-	-	T	36845798	C	T	36845798	3	4	677	1	0	0	0	0	1	0	0	0	8309	922	32	2	852	2	KIAA1755	20	36845798	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	819594	36845798	26179722	633	58699										
CHD6	0	genome.wustl.edu	37	chr20	40033355	40033355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atcaccgctgggctccctttCacagctgggagcaggctctg	12	14	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	40033355	40033355	C	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.8026	p.E2676K	0.311	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	108	0	0	28	29	50.88	-	-	-	T	40033355	C	T	40033355	3	4	677	1	0	0	0	0	1	0	0	0	3358	835	29	2	125	2	CHD6	20	40033355	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3187557	40033355	22992165	634	58700										
PTPRT	0	genome.wustl.edu	37	chr20	41419914	41419914	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgacgaccccggacacattcCacacagggttcccttggggg	12	14	0	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	41419914	41419914	C	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.407	p.W136L	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	43	0	0	30	7	18.92	-	-	-	A	41419914	C	A	41419914	3	1	677	1	0	0	0	0	1	0	0	0	12895	595	21	4	4095	4	PTPRT	20	41419914	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1386559	41419914	21605606	635	58701										
PTPRT	0	genome.wustl.edu	37	chr20	41420063	41420063	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcaggagaaggtgggccttCtggccagaggctctcccaga	16	11	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	41420063	41420063	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.258	p.Q86	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	61	0	0	30	9	23.08	-	-	-	T	41420063	C	T	41420063	2	4	677	1	0	0	0	0	0	0	0	1	12895	912	32	2		2	PTPRT	20	41420063	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	149	41420063	21605457	636	58702										
SYS1	0	genome.wustl.edu	37	chr20	43992240	43992240	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcgcagatcgtcctcatgcaGaccgtgtattacggctcgct	10	13	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	43992240	43992240	G	C	SNP	SYS1	ENST00000243918	human	ensembl	69_37n	1	known	missense	c.69	p.Q23H	0.996	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	-	no_errors	SYS1	HGNC	ENSG00000204070	53	0	0	19	14	42.42	-	-	-	C	43992240	G	C	43992240	3	2	677	1	0	0	0	0	1	0	0	0	15556	933	33	2	71	2	SYS1	20	43992240	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2572177	43992240	19033280	637	58703										
CSE1L	0	genome.wustl.edu	37	chr20	47701911	47701911	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctggctcttcagaaaatgaaTatattatgaaaggtaggctg	10	5	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	47701911	47701911	T	G	SNP	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	missense	c.1711	p.Y571D	1.000	pfam_CAS_CSE1_C,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	100	0	0	92	26	22.03	-	-	-	G	47701911	T	G	47701911	3	3	677	1	0	0	0	0	1	0	0	0	3962	1406	49	5	1769	5	CSE1L	20	47701911	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	3709671	47701911	15323609	638	58704										
ZNFX1	0	genome.wustl.edu	37	chr20	47887732	47887732	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttttcaatatgcccagtacaTggagaacactctggcgatcc	8	11	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	47887732	47887732	T	G	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	missense	c.617	p.H206P	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	77	0	0	70	34	32.69	-	-	-	G	47887732	T	G	47887732	3	3	677	1	0	0	0	0	1	0	0	0	18298	1464	51	5	5187	5	ZNFX1	20	47887732	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	185821	47887732	15137788	639	58705										
CASS4	0	genome.wustl.edu	37	chr20	55027016	55027016	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcagaaacacgcctctcaccAgctttgcggaagaatcaagg	9	12	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	55027016	55027016	A	G	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	1	known	missense	c.784	p.S262G	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	72	0	0	45	30	40	-	-	-	G	55027016	A	G	55027016	3	3	677	1	0	0	0	0	1	0	0	0	2708	188	7	5	802	5	CASS4	20	55027016	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	7139284	55027016	7998504	640	58706										
CDH26	0	genome.wustl.edu	37	chr20	58559719	58559719	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctatttttcagatgttagcAgtcgatttggatgaagaaaa	9	5	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	58559719	58559719	A	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.567	p.A189	0.066	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	112	0	0	109	32	22.7	-	-	-	G	58559719	A	G	58559719	2	3	677	1	0	0	0	0	0	0	0	1	3139	175	7	5		5	CDH26	20	58559719	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	3532703	58559719	4465801	641	58707										
CDH4	0	genome.wustl.edu	37	chr20	60485542	60485542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaacctcacggtgatggaccGagatcagccccactctccaa	8	15	3	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	60485542	60485542	G	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.1253	p.R418Q	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	62	0	0	41	24	36.92	-	-	-	A	60485542	G	A	60485542	3	1	677	1	0	0	0	0	1	0	0	0	3141	1058	37	1	1287	1	CDH4	20	60485542	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1925823	60485542	2539978	642	58708										
SLCO4A1	0	genome.wustl.edu	37	chr20	61300421	61300421	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacatactcatcatggggctCctgtacaaggtaagcaggcc	10	11	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	61300421	61300421	C	G	SNP	SLCO4A1	ENST00000217159	human	ensembl	69_37n	1	known	silent	c.2016	p.L672	0.011	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187	52	0	0	16	12	42.86	-	-	-	G	61300421	C	G	61300421	2	3	677	1	0	0	0	0	0	0	0	1	14818	842	30	2		2	SLCO4A1	20	61300421	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	814879	61300421	1725099	643	58709										
COL20A1	0	genome.wustl.edu	37	chr20	61929275	61929275	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctgtagcaagcggtctcctGaggctggctgtgctgcctga	14	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	20	61929275	61929275	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	1	known	silent	c.96	p.L32	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	49	0	0	10	10	50	-	-	-	A	61929275	G	A	61929275	2	1	677	1	0	0	0	0	0	0	0	1	3709	1277	45	2		2	COL20A1	20	61929275	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	628854	61929275	1096245	644	58710										
GRIK1	0	genome.wustl.edu	37	chr21	30949301	30949301	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	taccttgaagaaggtcattgTtgatccatctctaaccgccc	7	12	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	30949301	30949301	T	C	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2119	p.T707A	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	97	0	0	38	30	44.12	-	-	-	C	30949301	T	C	30949301	3	2	677	1	0	0	0	0	1	0	0	0	6824	1725	60	5	819	5	GRIK1	21	30949301	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09		30949301	17180594	645	58711										
KRTAP13-3	0	genome.wustl.edu	37	chr21	31797808	31797808	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tggcagaatctggatctataActctgggaaggggaggtatg	15	5	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	31797808	31797808	A	T	SNP	KRTAP13-3	ENST00000390690	human	ensembl	69_37n	-1	known	missense	c.423	p.S141R	0.227	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432	38	0	0	14	21	60	-	-	-	T	31797808	A	T	31797808	3	4	677	1	0	0	0	0	1	0	0	0	8577	40	2	5	99	5	KRTAP13-3	21	31797808	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	848507	31797808	16332087	646	58712										
TIAM1	0	genome.wustl.edu	37	chr21	32639061	32639061	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tctagggtaccatcttgggaGaagggctccaggccattttc	12	10	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	32639061	32639061	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	silent	c.228	p.F76	0.975	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	40	0	0	8	8	50	-	-	-	A	32639061	G	A	32639061	2	1	677	1	0	0	0	0	0	0	0	1	15985	933	33	2		2	TIAM1	21	32639061	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	841253	32639061	15490834	647	58713										
TMEM50B	0	genome.wustl.edu	37	chr21	34839406	34839406	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tacaccacagctgcatcaatCattatccaccagcctgtaaa	4	14	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	34839406	34839406	C	G	SNP	TMEM50B	ENST00000420455	human	ensembl	69_37n	-1	known	missense	c.123	p.M41I	1.000	pfam_UPF0220	pfam_UPF0220	-	no_errors	TMEM50B	HGNC	ENSG00000142188	171	0	0	34	56	62.22	-	-	-	G	34839406	C	G	34839406	3	3	677	1	0	0	0	0	1	0	0	0	16271	826	29	2	373	2	TMEM50B	21	34839406	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	2200345	34839406	13290489	648	58714										
CLIC6	0	genome.wustl.edu	37	chr21	36088701	36088701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cttgaataatgcttatgctaGagatgagttcacaaatacgt	8	6	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	36088701	36088701	G	A	SNP	CLIC6	ENST00000360731	human	ensembl	69_37n	1	known	missense	c.2036	p.R679K	0.992	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC6	HGNC	ENSG00000159212	142	0	0	56	63	52.94	-	-	-	A	36088701	G	A	36088701	3	1	677	1	0	0	0	0	1	0	0	0	3560	942	33	2	2004	2	CLIC6	21	36088701	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1249295	36088701	12041194	649	58715										
LCA5L	0	genome.wustl.edu	37	chr21	40795031	40795031	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgcaagatatctttagtcttCagtaactggctgtcagtttc	8	8	4	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	40795031	40795031	C	A	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	silent	c.708	p.L236	0.115	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	165	0	0	90	90	50	-	-	-	A	40795031	C	A	40795031	2	1	677	1	0	0	0	0	0	0	0	1	8711	813	29	2		2	LCA5L	21	40795031	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	4706330	40795031	7334864	650	58716										
UMODL1	0	genome.wustl.edu	37	chr21	43524173	43524173	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	caagcacagtgttccagattGaccggcaggggacacgcgtg	14	11	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	21	43524173	43524173	G	A	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.1495	p.D499N	0.815	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	53	0	0	14	22	61.11	-	-	-	A	43524173	G	A	43524173	3	1	677	1	0	0	0	0	1	0	0	0	17077	1290	45	2	1529	2	UMODL1	21	43524173	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	2729142	43524173	4605722	651	58717										
SGSM1	0	genome.wustl.edu	37	chr22	25272622	25272622	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tccccggaagtcctcctgttCatcctgttcacagagtggct	9	14	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	25272622	25272622	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.1535	p.S512L	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	133	0	0	37	34	47.89	-	-	-	T	25272622	C	T	25272622	3	4	677	1	0	0	0	0	1	0	0	0	14310	838	29	2	1589	2	SGSM1	22	25272622	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09		25272622	26031944	652	58718										
SEC14L3	0	genome.wustl.edu	37	chr22	30857624	30857624	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgcaccgagtgctcgtactGagtcttcacctggtcccgca	10	15	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	30857624	30857624	G	C	SNP	SEC14L3	ENST00000215812	human	ensembl	69_37n	-1	known	missense	c.829	p.Q277E	0.870	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L3	HGNC	ENSG00000100012	82	0	0	25	39	60.94	-	-	-	C	30857624	G	C	30857624	3	2	677	1	0	0	0	0	1	0	0	0	14071	1299	45	2	385	2	SEC14L3	22	30857624	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5585002	30857624	20446942	653	58719										
SGSM3	0	genome.wustl.edu	37	chr22	40800417	40800417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ccccgctctgagaagctccgCtccctggtgctggccggcat	12	17	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	40800417	40800417	C	T	SNP	SGSM3	ENST00000248929	human	ensembl	69_37n	1	known	silent	c.324	p.R108	0.989	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359	60	0	0	9	14	60.87	-	-	-	T	40800417	C	T	40800417	2	4	677	1	0	0	0	0	0	0	0	1	14312	784	28	4		4	SGSM3	22	40800417	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9942793	40800417	10504149	654	58720										
CYP2D6	0	genome.wustl.edu	37	chr22	42524214	42524214	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gaaggcctcagtcaggtctcGggggggctgggctgggtccc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	42524214	42524214	G	-	DEL	CYP2D6	ENST00000360608	human	ensembl	69_37n	-1	known	frame_shift_del	c.805	p.R269fs	0.947	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197	70	0	0	13	9	37.5	-	-	-	-	42524214	G	-	42524214	7	5	677	1	0	1	0	1	0	0	0	0	4200	1124	39	0	708	0	CYP2D6	22	42524214	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	1723797	42524214	8780352	655	58721										
UPK3A	0	genome.wustl.edu	37	chr22	45689105	45689105	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	acgtggccaggccggcggagCggaggcatgatcgtcatcac	16	12	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	45689105	45689105	C	T	SNP	UPK3A	ENST00000216211	human	ensembl	69_37n	1	known	silent	c.615	p.S205	0.984	NULL	NULL	-	no_errors	UPK3A	HGNC	ENSG00000100373	102	0	0	38	27	41.54	-	-	-	T	45689105	C	T	45689105	2	4	677	1	0	0	0	0	0	0	0	1	17107	767	27	1		1	UPK3A	22	45689105	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3164891	45689105	5615461	656	58722										
TYMP	0	genome.wustl.edu	37	chr22	50966117	50966117	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcactctgacccacgatacaGcagcccgcctggtccagcag	9	17	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	22	50966117	50966117	G	A	SNP	TYMP	ENST00000252029	human	ensembl	69_37n	-1	known	silent	c.546	p.C182	1.000	pfam_Glycosyl_Trfase_fam3,superfamily_Glycosyl_Trfase_fam3,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708	68	0	0	31	19	38	-	-	-	A	50966117	G	A	50966117	2	1	677	1	0	0	0	0	0	0	0	1	16908	963	34	4		4	TYMP	22	50966117	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5277012	50966117	338449	657	58723										
DHRSX	0	genome.wustl.edu	37	chrX	2343248	2343248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aagtcatcacctatgataacAtgcatgccaagtctcgccag	7	12	3	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	2343248	2343248	A	G	SNP	DHRSX	ENST00000478825	human	ensembl	69_37n	-1	known	missense	c.377	p.M126T	0.995	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHRSX	HGNC	ENSG00000169084	193	0	0	86	55	39.01	-	-	-	G	2343248	A	G	2343248	3	3	677	1	0	0	0	0	1	0	0	0	4535	214	8	5	809	5	DHRSX	23	2343248	Missense_Mutation	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09		2343248	152927312	658	58724										
ARHGAP6	0	genome.wustl.edu	37	chrX	11682550	11682550	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggcaggtcccaggccatgctCttcttgaggccgccgcgacc	13	16	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	11682550	11682550	C	G	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	missense	c.399	p.K133N	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	55	0	0	9	7	43.75	-	-	-	G	11682550	C	G	11682550	3	3	677	1	0	0	0	0	1	0	0	0	889	912	32	2	2699	2	ARHGAP6	23	11682550	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	9339302	11682550	143588010	659	58725										
FAM47A	0	genome.wustl.edu	37	chrX	34149897	34149897	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgttgtcttctcctgggtctCacaacaagcccaagcgtcct	8	14	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	34149897	34149897	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.499	p.E167K	0.007	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	116	0	0	36	45	55.56	-	-	-	T	34149897	C	T	34149897	3	4	677	1	0	0	0	0	1	0	0	0	5615	835	29	2	1880	2	FAM47A	23	34149897	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	22467347	34149897	121120663	660	58726										
CXorf22	0	genome.wustl.edu	37	chrX	35993898	35993898	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgagctagtattgagaccaCgaggcttcttcatgaaaaca	9	8	2	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	35993898	35993898	C	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	nonsense	c.2581	p.R861*	0.291	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	88	0	0	30	46	60.53	-	-	-	T	35993898	C	T	35993898	4	4	677	1	0	0	0	0	0	1	0	0	4133	528	19	1	2639	1	CXorf22	23	35993898	Nonsense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	1844001	35993898	119276662	661	58727										
FOXP3	0	genome.wustl.edu	37	chrX	49107846	49107846	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctgggcctctggctccgtttCttgcggaactccagctcatc	10	15	3	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	49107846	49107846	C	T	SNP	FOXP3	ENST00000376207	human	ensembl	69_37n	-1	known	silent	c.1245	p.K415	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP3	HGNC	ENSG00000049768	105	0	0	25	38	60.32	-	-	-	T	49107846	C	T	49107846	2	4	677	1	0	0	0	0	0	0	0	1	6076	912	32	2		2	FOXP3	23	49107846	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	13113948	49107846	106162714	662	58728										
GPR173	0	genome.wustl.edu	37	chrX	53106178	53106178	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gtcacccgctacatggccatCgcccaccaccgcttctacgc	7	20	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	53106178	53106178	C	T	SNP	GPR173	ENST00000332582	human	ensembl	69_37n	1	known	silent	c.375	p.I125	0.991	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194	43	0	0	13	11	45.83	-	-	-	T	53106178	C	T	53106178	2	4	677	1	0	0	0	0	0	0	0	1	6721	874	31	1		1	GPR173	23	53106178	Silent	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	3998332	53106178	102164382	663	58729										
KDM5C	0	genome.wustl.edu	37	chrX	53224232	53224232	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ggtgctgtctgagccggcatCtgcacatgggcagagaacct	14	11	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	53224232	53224232	C	G	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	missense	c.3319	p.D1107H	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	59	0	0	17	21	55.26	-	-	-	G	53224232	C	G	53224232	3	3	677	1	0	0	0	0	1	0	0	0	8188	913	32	2	1481	2	KDM5C	23	53224232	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	118054	53224232	102046328	664	58730										
IQSEC2	0	genome.wustl.edu	37	chrX	53276254	53276254	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	atgatggcaaaagcaaggatGaagatggtgtctgggttccg	15	5	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	53276254	53276254	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	silent	c.2646	p.F882	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	184	0	0	73	65	47.1	-	-	-	A	53276254	G	A	53276254	2	1	677	1	0	0	0	0	0	0	0	1	7872	1281	45	2		2	IQSEC2	23	53276254	Silent	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	52022	53276254	101994306	665	58731										
HEPH	0	genome.wustl.edu	37	chrX	65415033	65415033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	catgcagccccatggggtctTttatgagaaagactatgaag	11	8	1	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	65415033	65415033	T	C	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.1625	p.F542S	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	81	0	0	44	12	21.43	-	-	-	C	65415033	T	C	65415033	3	2	677	1	0	0	0	0	1	0	0	0	7105	1841	64	5	1659	5	HEPH	23	65415033	Missense_Mutation	SNP	T	TCGA-D8-A1J8-01A-11D-A13L-09	12138779	65415033	89855527	666	58732										
P2RY4	0	genome.wustl.edu	37	chrX	69478418	69478418	+	Frame_Shift_Del	DEL	G	G	-													0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	agtagagcagctactgtcctGgggggtggccgcccacctgc							TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	69478418	69478418	G	-	DEL	P2RY4	ENST00000374519	human	ensembl	69_37n	-1	known	frame_shift_del	c.1057	p.Q353fs	0.000	prints_P2Y4_purnocptor,prints_P2U_purnocptor	pfam_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY4	HGNC	ENSG00000186912	58	0	0	18	8	30.77	-	-	-	-	69478418	G	-	69478418	7	5	677	1	0	1	0	1	0	0	0	0	11426	1357	47	0	44	0	P2RY4	23	69478418	Frame_Shift_Del	DEL	G	TCGA-D8-A1J8-01A-11D-A13L-09	4063385	69478418	85792142	667	58733										
ARMCX6	0	genome.wustl.edu	37	chrX	100871481	100871481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcctggtcatcgtcccactCctcttccccctcctcctcca	3	23	2	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	100871481	100871481	C	G	SNP	ARMCX6	ENST00000361910	human	ensembl	69_37n	-1	known	missense	c.130	p.E44Q	0.988	NULL	pfam_ARM-rpt_dom	-	no_errors	ARMCX6	HGNC	ENSG00000198960	187	0	0	43	49	53.26	-	-	-	G	100871481	C	G	100871481	3	3	677	1	0	0	0	0	1	0	0	0	967	864	30	2	776	2	ARMCX6	23	100871481	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	31393063	100871481	54399079	668	58734										
IL1RAPL2	0	genome.wustl.edu	37	chrX	104440363	104440363	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cagaggtcaggatgagcaaaGaggaagattcaatatggttt	13	4	2	4			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	104440363	104440363	G	C	SNP	IL1RAPL2	ENST00000344799	human	ensembl	69_37n	1	known	missense	c.289	p.E97Q	1.000	smart_Ig_sub,pfscan_Ig-like,prints_Interleukin-1_rcpt_II	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_Interleukin-1_rcpt_II	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108	77	0	0	32	29	47.54	-	-	-	C	104440363	G	C	104440363	3	2	677	1	0	0	0	0	1	0	0	0	7716	943	33	2	295	2	IL1RAPL2	23	104440363	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	3568882	104440363	50830197	669	58735										
TBC1D8B	0	genome.wustl.edu	37	chrX	106065207	106065207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	aaatattttgtctcctttagGgattaattgctgaagaggga	10	4	1	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	106065207	106065207	G	A	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.361	p.G121R	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	48	0	0	36	27	42.86	-	-	-	A	106065207	G	A	106065207	3	1	677	1	0	0	0	0	1	0	0	0	15721	1246	43	4	375	4	TBC1D8B	23	106065207	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	1624844	106065207	49205353	670	58736										
ACSL4	0	genome.wustl.edu	37	chrX	108926090	108926090	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ttcactctgcgattcacttcAagatagttcatccatttata	4	10	5	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	108926090	108926090	A	G	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	silent	c.387	p.L129	0.010	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	81	0	0	27	27	50	-	-	-	G	108926090	A	G	108926090	2	3	677	1	0	0	0	0	0	0	0	1	179	117	5	5		5	ACSL4	23	108926090	Silent	SNP	A	TCGA-D8-A1J8-01A-11D-A13L-09	2860883	108926090	46344470	671	58737										
LRCH2	0	genome.wustl.edu	37	chrX	114400488	114400488	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tgattctgagacttgagaatGaaggctgactgtgtcatcat	11	6	3	5			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	114400488	114400488	G	C	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.1114	p.H372D	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	168	0	0	53	56	51.38	-	-	-	C	114400488	G	C	114400488	3	2	677	1	0	0	0	0	1	0	0	0	8999	1290	45	2	1239	2	LRCH2	23	114400488	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	5474398	114400488	40870072	672	58738										
GABRA3	0	genome.wustl.edu	37	chrX	151336964	151336964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tcagtgtccttggccaggttGatgggataggtggtccccac	14	10	1	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	151336964	151336964	G	C	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	missense	c.1215	p.I405M	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABBAa3_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	254	0	0	83	105	55.85	-	-	-	C	151336964	G	C	151336964	3	2	677	1	0	0	0	0	1	0	0	0	6211	1280	45	2	267	2	GABRA3	23	151336964	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	36936476	151336964	3933596	673	58739										
PNMA3	0	genome.wustl.edu	37	chrX	152226242	152226242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	tttggaacccctgctccaaaGagctgtagaaaacaatgtgg	10	9	0	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	152226242	152226242	G	C	SNP	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	missense	c.830	p.R277T	0.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	112	0	0	40	37	48.05	-	-	-	C	152226242	G	C	152226242	3	2	677	1	0	0	0	0	1	0	0	0	12229	942	33	2	832	2	PNMA3	23	152226242	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	889278	152226242	3044318	674	58740										
ZNF275	0	genome.wustl.edu	37	chrX	152612505	152612505	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cctgcttgtccagcaccagaGagtccacagtgaggagaagg	13	11	0	3			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	152612505	152612505	G	C	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	1	known	missense	c.452	p.R151T	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	89	0	0	19	38	66.67	-	-	-	C	152612505	G	C	152612505	3	2	677	1	0	0	0	0	1	0	0	0	17906	942	33	2	372	2	ZNF275	23	152612505	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	386263	152612505	2658055	675	58741										
BCAP31	0	genome.wustl.edu	37	chrX	152969538	152969538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	gcgaaatgagagtcaccaggCgtctaagcaggctgcaatta	12	9	2	1			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	152969538	152969538	C	T	SNP	BCAP31	ENST00000458587	human	ensembl	69_37n	-1	known	missense	c.554	p.R185H	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825	73	0	0	25	22	46.81	-	-	-	T	152969538	C	T	152969538	3	4	677	1	0	0	0	0	1	0	0	0	1351	768	27	1	403	1	BCAP31	23	152969538	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	357033	152969538	2301022	676	58742										
SRPK3	0	genome.wustl.edu	37	chrX	153047644	153047644	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcattgatgacttcaggatCtcaggagtcaatggagtccg	11	9	4	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	153047644	153047644	C	A	SNP	SRPK3	ENST00000430541	human	ensembl	69_37n	1	putative	missense	c.497	p.S166Y	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRPK3	HGNC	ENSG00000184343	89	0	0	30	27	47.37	-	-	-	A	153047644	C	A	153047644	3	1	677	1	0	0	0	0	1	0	0	0	15252	903	32	2	474	2	SRPK3	23	153047644	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	78106	153047644	2222916	677	58743										
G6PD	0	genome.wustl.edu	37	chrX	153760987	153760987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	cggccttgcgctcgttcaggGccttgccgcagcgcaggatg	15	14	1	0			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	153760987	153760987	G	A	SNP	G6PD	ENST00000369620	human	ensembl	69_37n	-1	known	missense	c.1220	p.A407V	1.000	pfam_G6P_DH_C,pirsf_G6P_DH,prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211	31	0	0	8	16	66.67	-	-	-	A	153760987	G	A	153760987	3	1	677	1	0	0	0	0	1	0	0	0	6195	1203	42	4	481	4	G6PD	23	153760987	Missense_Mutation	SNP	G	TCGA-D8-A1J8-01A-11D-A13L-09	713343	153760987	1509573	678	58744										
CLIC2	0	genome.wustl.edu	37	chrX	154563718	154563718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.394698085419735	268	1.78463084398912e-77	3.39730318380931	4.92557651991614	2.65525139055513	0.281031584133873	0.930327025915261	189	ctcagggtccacttgagtgcCgggccgcaggcctgacatct	13	14	2	2			TCGA-D8-A1J8-01A-11D-A13L-09	TCGA-D8-A1J8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1857f611-3082-45d3-801c-800e685ade07	58ca54bc-8f1a-4ffc-916c-f96b993e3c45	X	154563718	154563718	C	T	SNP	CLIC2	ENST00000369449	human	ensembl	69_37n	-1	known	missense	c.19	p.G7S	0.003	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC2	HGNC	ENSG00000155962	76	0	0	44	32	41.56	-	-	-	T	154563718	C	T	154563718	3	4	677	1	0	0	0	0	1	0	0	0	3556	652	23	1	748	1	CLIC2	23	154563718	Missense_Mutation	SNP	C	TCGA-D8-A1J8-01A-11D-A13L-09	802731	154563718	706842	679	58745										
HES4	0	genome.wustl.edu	37	chr1	934931	934931	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	acctgcacgcgacgcaggctCcgcaggtgtctcacggtcat	12	15	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	934931	934931	C	G	SNP	HES4	ENST00000428771	human	ensembl	69_37n	-1	known	silent	c.345	p.R115	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_Orange,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HES4	HGNC	ENSG00000188290	10	0	0	16	10	38.46	-	-	-	G	934931	C	G	934931	2	3	678	1	0	0	0	0	0	0	0	1	7119	842	30	2		2	HES4	1	934931	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		934931	248315690	1	58746										
UBE4B	0	genome.wustl.edu	37	chr1	10190626	10190626	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gggcgggagctgcagagactCtcttacttaggggctttctt	14	9	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	10190626	10190626	C	G	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	silent	c.1764	p.L588	0.651	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	101	0	0	93	51	35.42	-	-	-	G	10190626	C	G	10190626	2	3	678	1	0	0	0	0	0	0	0	1	16980	900	32	2		2	UBE4B	1	10190626	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	9255695	10190626	239059995	2	58747										
MACF1	0	genome.wustl.edu	37	chr1	39824490	39824490	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	caacgtggagaagctcctctCagatactgttgcctctgacc	9	13	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	39824490	39824490	C	G	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	nonsense	c.5879	p.S1960*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	26	0	0	26	16	38.1	-	-	-	G	39824490	C	G	39824490	4	3	678	1	0	0	0	0	0	1	0	0	9211	838	29	2	12192	2	MACF1	1	39824490	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	29633864	39824490	209426131	3	58748										
ERI3	0	genome.wustl.edu	37	chr1	44820585	44820585	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccggggtgttgcccccaactCgggcccatccaagtccaggg	13	16	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	44820585	44820585	C	T	SNP	ERI3	ENST00000372257	human	ensembl	69_37n	-1	known	silent	c.114	p.P38	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI3	HGNC	ENSG00000117419	9	0	0	4	6	60	-	-	-	T	44820585	C	T	44820585	2	4	678	1	0	0	0	0	0	0	0	1	5266	871	31	1		1	ERI3	1	44820585	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4996095	44820585	204430036	4	58749										
MCOLN3	0	genome.wustl.edu	37	chr1	85506704	85506704	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttgatttacctggtttactgCgaagattaactgatcataca	7	7	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	85506704	85506704	C	G	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.385	p.A129P	0.997	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	89	0	0	106	59	35.76	-	-	-	G	85506704	C	G	85506704	3	3	678	1	0	0	0	0	1	0	0	0	9468	768	27	3	1320	3	MCOLN3	1	85506704	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	40686119	85506704	163743917	5	58750										
GBP4	0	genome.wustl.edu	37	chr1	89651146	89651146	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttcttccttaagcatttcttCttgtacctataaaagggaaa	5	8	3	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	89651146	89651146	C	T	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.1714	p.E572K	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	85	0	0	103	37	26.24	-	-	-	T	89651146	C	T	89651146	3	4	678	1	0	0	0	0	1	0	0	0	6326	922	32	2	212	2	GBP4	1	89651146	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4144442	89651146	159599475	6	58751										
BCAS2	0	genome.wustl.edu	37	chr1	115113352	115113352	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aagttccttctgtgcgtgttCaatcatatgaactagatttc	7	8	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	115113352	115113352	C	G	SNP	BCAS2	ENST00000369541	human	ensembl	69_37n	-1	known	missense	c.439	p.E147Q	1.000	pfam_BCAS2	pfam_BCAS2	-	no_errors	BCAS2	HGNC	ENSG00000116752	62	0	0	35	26	42.62	-	-	-	G	115113352	C	G	115113352	3	3	678	1	0	0	0	0	1	0	0	0	1355	835	29	2	250	2	BCAS2	1	115113352	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	25462206	115113352	134137269	7	58752										
NUDT17	0	genome.wustl.edu	37	chr1	145588435	145588435	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tggggcaggtgtagtccactCtcctcccaaagttctcgaag	11	12	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	145588435	145588435	C	T	SNP	NUDT17	ENST00000444015	human	ensembl	69_37n	-1	known	missense	c.118	p.E40K	0.508	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUDT17	HGNC	ENSG00000186364	56	0	0	48	25	34.25	-	-	-	T	145588435	C	T	145588435	3	4	678	1	0	0	0	0	1	0	0	0	10807	912	32	2	568	2	NUDT17	1	145588435	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	30475083	145588435	103662186	8	58753										
BOLA1	0	genome.wustl.edu	37	chr1	149871844	149871844	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgtggtgagctctcgtttcGagggactgagccccctacaa	12	12	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	149871844	149871844	G	C	SNP	BOLA1	ENST00000369150	human	ensembl	69_37n	1	known	missense	c.232	p.E78Q	0.998	pfam_BolA,superfamily_BolA	pfam_BolA,superfamily_BolA	-	no_errors	BOLA1	HGNC	ENSG00000178096	14	0	0	10	16	61.54	-	-	-	C	149871844	G	C	149871844	3	2	678	1	0	0	0	0	1	0	0	0	1490	1059	37	3	234	3	BOLA1	1	149871844	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	4283409	149871844	99378777	9	58754										
UBAP2L	0	genome.wustl.edu	37	chr1	154241261	154241261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgagaaacaaggttttcattCcggtactcctgctgcttcct	8	11	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	154241261	154241261	C	T	SNP	UBAP2L	ENST00000361546	human	ensembl	69_37n	1	known	missense	c.2999	p.S1000F	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569	66	0	0	48	44	47.83	-	-	-	T	154241261	C	T	154241261	3	4	678	1	0	0	0	0	1	0	0	0	16935	855	30	2	3151	2	UBAP2L	1	154241261	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4369417	154241261	95009360	10	58755										
FCRL3	0	genome.wustl.edu	37	chr1	157660235	157660235	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aggatcgggaaggagcctctCagggactcacagtgaagctc	14	10	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	157660235	157660235	C	G	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	silent	c.1500	p.L500	0.005	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	47	0	0	47	16	25.4	-	-	-	G	157660235	C	G	157660235	2	3	678	1	0	0	0	0	0	0	0	1	5842	813	29	2		2	FCRL3	1	157660235	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	3418974	157660235	91590386	11	58756										
DDR2	0	genome.wustl.edu	37	chr1	162729640	162729640	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgtctggcctggacgatttCacccagacccatgaatacca	9	13	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	162729640	162729640	C	T	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	silent	c.726	p.F242	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	63	0	0	66	22	25	-	-	-	T	162729640	C	T	162729640	2	4	678	1	0	0	0	0	0	0	0	1	4368	825	29	2		2	DDR2	1	162729640	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	5069405	162729640	86520981	12	58757										
SOAT1	0	genome.wustl.edu	37	chr1	179310328	179310328	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	catccgctgatccgttctctCttccatggctttcttttcat	5	14	4	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	179310328	179310328	C	A	SNP	SOAT1	ENST00000367619	human	ensembl	69_37n	1	known	silent	c.663	p.L221	0.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	102	0	0	148	69	31.8	-	-	-	A	179310328	C	A	179310328	2	1	678	1	0	0	0	0	0	0	0	1	14999	900	32	2		2	SOAT1	1	179310328	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	16580688	179310328	69940293	13	58758										
ARPC5	0	genome.wustl.edu	37	chr1	183599740	183599740	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcattagctttaaaagagatGagcaccttcaagacaatgct	7	8	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	183599740	183599740	G	A	SNP	ARPC5	ENST00000294742	human	ensembl	69_37n	-1	known	silent	c.258	p.L86	1.000	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5	HGNC	ENSG00000162704	66	0	0	105	33	23.74	-	-	-	A	183599740	G	A	183599740	2	1	678	1	0	0	0	0	0	0	0	1	978	1277	45	2		2	ARPC5	1	183599740	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	4289412	183599740	65650881	14	58759										
GLT25D2	0	genome.wustl.edu	37	chr1	183920242	183920242	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgcgtttgaggtttatcatGaaaatctaatgcaagaagga	10	5	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	183920242	183920242	G	A	SNP	GLT25D2	ENST00000361927	human	ensembl	69_37n	-1	known	silent	c.1035	p.F345	1.000	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	GLT25D2	HGNC	ENSG00000198756	77	0	0	89	64	41.83	-	-	-	A	183920242	G	A	183920242	2	1	678	1	0	0	0	0	0	0	0	1	6519	1281	45	2		2	GLT25D2	1	183920242	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	320502	183920242	65330379	15	58760										
LHX9	0	genome.wustl.edu	37	chr1	197898203	197898203	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gagaatgggggtgttgataaAgctgacggcacgtcgcttcc	15	8	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	197898203	197898203	A	G	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	silent	c.1008	p.K336	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	37	0	0	25	32	56.14	-	-	-	G	197898203	A	G	197898203	2	3	678	1	0	0	0	0	0	0	0	1	8832	69	3	5		5	LHX9	1	197898203	Silent	SNP	A	TCGA-D8-A1J9-01A-11D-A13L-09	13977961	197898203	51352418	16	58761										
TRAF5	0	genome.wustl.edu	37	chr1	211526585	211526585	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cccctgacctctgcagaatgGcttattcagaagagcataaa	8	11	2	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	211526585	211526585	G	C	SNP	TRAF5	ENST00000261464	human	ensembl	69_37n	1	known	missense	c.4	p.A2P	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512	47	0	0	37	43	53.75	-	-	-	C	211526585	G	C	211526585	3	2	678	1	0	0	0	0	1	0	0	0	16540	1203	42	4	6	4	TRAF5	1	211526585	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	13628382	211526585	37724036	17	58762										
URB2	0	genome.wustl.edu	37	chr1	229770771	229770771	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcgacacctgccctggctgtCatctacacggccaaacagga	9	15	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	229770771	229770771	C	T	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	silent	c.411	p.V137	0.946	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	33	0	0	28	35	55.56	-	-	-	T	229770771	C	T	229770771	2	4	678	1	0	0	0	0	0	0	0	1	17122	813	29	2		2	URB2	1	229770771	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	18244186	229770771	19479850	18	58763										
WDR64	0	genome.wustl.edu	37	chr1	241886720	241886720	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gaaaaagatcaacatgtcgtCagcctttcctctgcaaaggt	8	10	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	241886720	241886720	C	G	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	silent	c.1146	p.V382	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	49	0	0	51	35	40.23	-	-	-	G	241886720	C	G	241886720	2	3	678	1	0	0	0	0	0	0	0	1	17412	813	29	2		2	WDR64	1	241886720	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	12115949	241886720	7363901	19	58764										
CNST	0	genome.wustl.edu	37	chr1	246810526	246810526	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	agcagtccctgctgtcatcaGatggacgtgcaaacagattc	10	11	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	1	246810526	246810526	G	C	SNP	CNST	ENST00000366513	human	ensembl	69_37n	1	known	missense	c.1023	p.Q341H	0.000	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	24	0	0	23	9	28.12	-	-	-	C	246810526	G	C	246810526	3	2	678	1	0	0	0	0	1	0	0	0	3664	933	33	2	1053	2	CNST	1	246810526	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	4923806	246810526	2440095	20	58765										
FAM179A	0	genome.wustl.edu	37	chr2	29246027	29246027	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gaggtcctcaccgggaagctGcacgacgtgtgcttggtggt	16	10	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	29246027	29246027	G	A	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	silent	c.1587	p.L529	0.999	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	27	0	0	15	6	28.57	-	-	-	A	29246027	G	A	29246027	2	1	678	1	0	0	0	0	0	0	0	1	5545	1306	46	4		4	FAM179A	2	29246027	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		29246027	213953346	21	58766										
HEATR5B	0	genome.wustl.edu	37	chr2	37284541	37284541	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcataatggcagagggatctGaggagggaagtagttgtgtt	16	3	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	37284541	37284541	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	silent	c.2142	p.L714	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	130	0	0	138	61	30.65	-	-	-	A	37284541	G	A	37284541	2	1	678	1	0	0	0	0	0	0	0	1	7083	1277	45	2		2	HEATR5B	2	37284541	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8038514	37284541	205914832	22	58767										
MSH2	0	genome.wustl.edu	37	chr2	47693816	47693816	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggcttggaccctggcaaacaGattaaactggattccagtgc	11	10	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	47693816	47693816	G	C	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	missense	c.1530	p.Q510H	1.000	pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	57	0	0	40	18	31.03	-	-	-	C	47693816	G	C	47693816	3	2	678	1	0	0	0	0	1	0	0	0	9942	933	33	2	1568	2	MSH2	2	47693816	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	10409275	47693816	195505557	23	58768										
CCT4	0	genome.wustl.edu	37	chr2	62099221	62099221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gagattaaatgattacctttCggacattaatgcctgcagtt	8	7	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	62099221	62099221	C	T	SNP	CCT4	ENST00000394440	human	ensembl	69_37n	-1	known	missense	c.1487	p.R496Q	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484	85	0	0	82	34	29.31	-	-	-	T	62099221	C	T	62099221	3	4	678	1	0	0	0	0	1	0	0	0	2984	884	31	1	144	1	CCT4	2	62099221	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	14405405	62099221	181100152	24	58769										
CCT4	0	genome.wustl.edu	37	chr2	62107467	62107467	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tctaagagggagccagcaatGatgactactgatgtggtgcc	13	8	1	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	62107467	62107467	G	A	SNP	CCT4	ENST00000394440	human	ensembl	69_37n	-1	known	silent	c.333	p.I111	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484	70	0	0	54	34	38.64	-	-	-	A	62107467	G	A	62107467	2	1	678	1	0	0	0	0	0	0	0	1	2984	1280	45	2		2	CCT4	2	62107467	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8246	62107467	181091906	25	58770										
ANKRD36	0	genome.wustl.edu	37	chr2	97860646	97860646	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aaaaaaggatggagaaatatCtaggaaaggtaattttgcga	11	2	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	97860646	97860646	C	A	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.2543	p.S848Y	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	213	0	0	264	53	16.72	-	-	-	A	97860646	C	A	97860646	3	1	678	1	0	0	0	0	1	0	0	0	664	913	32	2	2701	2	ANKRD36	2	97860646	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	35753179	97860646	145338727	26	58771										
BCL2L11	0	genome.wustl.edu	37	chr2	111907684	111907684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atggatcgcccaagagttgcGgcgtattggagacgagttta	14	7	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	111907684	111907684	G	C	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	missense	c.458	p.R153P	1.000	pfam_Bcl-x_interacting,pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	38	0	0	31	23	42.59	-	-	-	C	111907684	G	C	111907684	3	2	678	1	0	0	0	0	1	0	0	0	1373	1116	39	3	593	3	BCL2L11	2	111907684	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	14047038	111907684	131291689	27	58772										
GPR39	0	genome.wustl.edu	37	chr2	133402996	133402996	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tttgtgcagcgcccgttgctCttcgcgtcccggcgccagtc	12	16	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	133402996	133402996	C	G	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	0.925	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	20	0	0	15	9	37.5	-	-	-	G	133402996	C	G	133402996	2	3	678	1	0	0	0	0	0	0	0	1	6743	900	32	2		2	GPR39	2	133402996	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	21495312	133402996	109796377	28	58773										
THSD7B	0	genome.wustl.edu	37	chr2	137852504	137852504	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gcatcatgcccaaagactgtGaaacctcccagtggtcctcc	8	15	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	137852504	137852504	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.1012	p.E338K	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	78	0	0	66	39	37.14	-	-	-	A	137852504	G	A	137852504	3	1	678	1	0	0	0	0	1	0	0	0	15975	1291	45	2	929	2	THSD7B	2	137852504	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	4449508	137852504	105346869	29	58774										
TNFAIP6	0	genome.wustl.edu	37	chr2	152230093	152230093	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gatgagcttccagatgacatCatcagtacaggtaaggtttt	10	7	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	152230093	152230093	C	A	SNP	TNFAIP6	ENST00000243347	human	ensembl	69_37n	1	known	silent	c.654	p.I218	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Link,superfamily_CUB,superfamily_C-type_lectin_fold,smart_Link,smart_CUB,pfscan_CUB,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	126	0	0	87	55	38.73	-	-	-	A	152230093	C	A	152230093	2	1	678	1	0	0	0	0	0	0	0	1	16370	816	29	2		2	TNFAIP6	2	152230093	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	14377589	152230093	90969280	30	58775										
MARCH7	0	genome.wustl.edu	37	chr2	160619400	160619400	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccctgttgaaggctgagtatGagtttatcagctctggtctc	11	9	3	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	160619400	160619400	G	C	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	1	known	missense	c.1903	p.E635Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	78	0	0	95	43	31.16	-	-	-	C	160619400	G	C	160619400	3	2	678	1	0	0	0	0	1	0	0	0	9377	1291	45	2	1929	2	MARCH7	2	160619400	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8389307	160619400	82579973	31	58776										
LY75	0	genome.wustl.edu	37	chr2	160667156	160667156	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cttttgctgctggacatcttGatgaatatgtaagacgggac	11	7	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	160667156	160667156	G	C	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	nonsense	c.4580	p.S1527*	0.995	superfamily_C-type_lectin_fold	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	52	0	0	57	21	26.92	-	-	-	C	160667156	G	C	160667156	4	2	678	1	0	0	0	0	0	1	0	0	9166	1294	45	2	604	2	LY75	2	160667156	Nonsense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	47756	160667156	82532217	32	58777										
XIRP2	0	genome.wustl.edu	37	chr2	168106216	168106216	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctctggctgaaagacattatCagttacctaagaaggagaaa	9	7	2	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	168106216	168106216	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	nonsense	c.8314	p.Q2772*	0.485	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	25	0	0	27	9	23.68	-	-	-	T	168106216	C	T	168106216	4	4	678	1	0	0	0	0	0	1	0	0	17527	827	29	2	8344	2	XIRP2	2	168106216	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	7439060	168106216	75093157	33	58778										
TTN	0	genome.wustl.edu	37	chr2	179469849	179469849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctcacttcgggatacctcttCcttggttatctgaagtgcat	8	11	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	179469849	179469849	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.46351	p.E15451K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	79	0	0	88	56	38.89	-	-	-	T	179469849	C	T	179469849	3	4	678	1	0	0	0	0	1	0	0	0	16832	864	30	2	53970	2	TTN	2	179469849	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	11363633	179469849	63729524	34	58779										
TTN	0	genome.wustl.edu	37	chr2	179613383	179613383	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cacatctgtgtgttttatttGagtgtgaaactgctttaagt	9	5	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	179613383	179613383	G	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.13744	p.Q4582E	0.002	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	100	0	0	72	60	45.45	-	-	-	C	179613383	G	C	179613383	3	2	678	1	0	0	0	0	1	0	0	0	16832	1299	45	2	96553	2	TTN	2	179613383	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	143534	179613383	63585990	35	58780										
SUMO1	0	genome.wustl.edu	37	chr2	203079096	203079096	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gaacctgtctttgacagtatGattctttgagtttcttgaga	9	6	3	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	203079096	203079096	G	T	SNP	SUMO1	ENST00000392245	human	ensembl	69_37n	-1	known	nonsense	c.149	p.S50*	1.000	pfam_SUMO,pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_SUMO,pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO1	HGNC	ENSG00000116030	176	0	0	140	51	26.7	-	-	-	T	203079096	G	T	203079096	4	4	678	1	0	0	0	0	0	1	0	0	15478	1294	45	2	168	2	SUMO1	2	203079096	Nonsense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	23465713	203079096	40120277	36	58781										
PIKFYVE	0	genome.wustl.edu	37	chr2	209190674	209190674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cttattctttggcctttaagCaggaattaaaagatgtgatc	8	6	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	209190674	209190674	C	G	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.3139	p.Q1047E	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	53	0	0	46	21	31.34	-	-	-	G	209190674	C	G	209190674	3	3	678	1	0	0	0	0	1	0	0	0	11998	711	25	4	3224	4	PIKFYVE	2	209190674	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	6111578	209190674	34008699	37	58782										
ABCB6	0	genome.wustl.edu	37	chr2	220080803	220080803	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gccccaggtgccagcgcagtGagagctcgtgcaggtgggag	18	11	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	220080803	220080803	G	C	SNP	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	nonsense	c.1070	p.S357*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	16	0	0	12	5	29.41	-	-	-	C	220080803	G	C	220080803	4	2	678	1	0	0	0	0	0	1	0	0	45	1294	45	2	1518	2	ABCB6	2	220080803	Nonsense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	10890129	220080803	23118570	38	58783										
ABCB6	0	genome.wustl.edu	37	chr2	220082409	220082409	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tacctggctcctttccacatCttggtcctcttcatgaacct	5	15	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	2	220082409	220082409	C	A	SNP	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	missense	c.670	p.D224Y	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	56	0	0	42	24	36.36	-	-	-	A	220082409	C	A	220082409	3	1	678	1	0	0	0	0	1	0	0	0	45	913	32	2	1930	2	ABCB6	2	220082409	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	1606	220082409	23116964	39	58784										
STAC	0	genome.wustl.edu	37	chr3	36484978	36484978	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	caagcacacatggtggctgaGatcagccccagctccagccc	10	16	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	36484978	36484978	G	A	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	silent	c.234	p.E78	0.008	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	37	0	0	25	15	37.5	-	-	-	A	36484978	G	A	36484978	2	1	678	1	0	0	0	0	0	0	0	1	15330	933	33	2		2	STAC	3	36484978	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		36484978	161537452	40	58785										
PBRM1	0	genome.wustl.edu	37	chr3	52584783	52584783	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgttgtccatatggacttcCacctggtgctggagtcccta	10	12	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	52584783	52584783	C	G	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	missense	c.4660	p.G1554R	1.000	NULL	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	54	0	0	34	14	29.17	-	-	-	G	52584783	C	G	52584783	3	3	678	1	0	0	0	0	1	0	0	0	11564	603	21	4	421	4	PBRM1	3	52584783	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	16099805	52584783	145437647	41	58786										
OR5H14	0	genome.wustl.edu	37	chr3	97868793	97868793	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atcccattgttaaagatttcTtatactgattcctctattaa	3	8	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	97868793	97868793	T	C	SNP	OR5H14	ENST00000437310	human	ensembl	69_37n	1	known	silent	c.564	p.S188	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032	163	0	0	138	74	34.91	-	-	-	C	97868793	T	C	97868793	2	2	678	1	0	0	0	0	0	0	0	1	11233	1596	56	5		5	OR5H14	3	97868793	Silent	SNP	T	TCGA-D8-A1J9-01A-11D-A13L-09	45284010	97868793	100153637	42	58787										
C3orf37	0	genome.wustl.edu	37	chr3	128998666	128998666	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggggccagcagcggctcccgGagtggagggaccctgataag	18	11	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	128998666	128998666	G	C	SNP	C3orf37	ENST00000383463	human	ensembl	69_37n	1	known	missense	c.91	p.E31Q	0.104	pfam_DUF159	pfam_DUF159	-	no_errors	C3orf37	HGNC	ENSG00000183624	41	0	0	32	13	28.89	-	-	-	C	128998666	G	C	128998666	3	2	678	1	0	0	0	0	1	0	0	0	2247	1175	41	2	93	2	C3orf37	3	128998666	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	31129873	128998666	69023764	43	58788										
C3orf37	0	genome.wustl.edu	37	chr3	129007811	129007811	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atactaccaactgtcgtagtGataccgtaatggagaaacgg	10	8	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	129007811	129007811	G	A	SNP	C3orf37	ENST00000383463	human	ensembl	69_37n	1	known	missense	c.298	p.D100N	1.000	pfam_DUF159	pfam_DUF159	-	no_errors	C3orf37	HGNC	ENSG00000183624	41	0	0	40	18	31.03	-	-	-	A	129007811	G	A	129007811	3	1	678	1	0	0	0	0	1	0	0	0	2247	1290	45	2	304	2	C3orf37	3	129007811	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	9145	129007811	69014619	44	58789										
GPR149	0	genome.wustl.edu	37	chr3	154055753	154055753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atggagatctgacttgtgtgGaggactgactgatgttacta	13	5	1	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	154055753	154055753	G	C	SNP	GPR149	ENST00000389740	human	ensembl	69_37n	-1	known	missense	c.1931	p.S644C	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR149	HGNC	ENSG00000174948	79	0	0	138	36	20.69	-	-	-	C	154055753	G	C	154055753	3	2	678	1	0	0	0	0	1	0	0	0	6704	1174	41	2	268	2	GPR149	3	154055753	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	25047942	154055753	43966677	45	58790										
SLITRK3	0	genome.wustl.edu	37	chr3	164908085	164908085	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atgagattatcatttaaaatCagaaccctcaatttacttag	4	7	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	164908085	164908085	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	silent	c.534	p.L178	0.949	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	52	0	0	52	22	29.73	-	-	-	T	164908085	C	T	164908085	2	4	678	1	0	0	0	0	0	0	0	1	14833	813	29	2		2	SLITRK3	3	164908085	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	10852332	164908085	33114345	46	58791										
ZBBX	0	genome.wustl.edu	37	chr3	167051719	167051719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gggttcatctggattaacatCctttataaactgatgggcaa	9	7	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	167051719	167051719	C	T	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.583	p.D195N	0.617	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	114	0	0	131	44	25.14	-	-	-	T	167051719	C	T	167051719	3	4	678	1	0	0	0	0	1	0	0	0	17613	855	30	2	1867	2	ZBBX	3	167051719	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	2143634	167051719	30970711	47	58792										
MASP1	0	genome.wustl.edu	37	chr3	187009524	187009524	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cgtgatgccttatctttgttCtgaggtccctgtgtgtctct	10	10	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	3	187009524	187009524	C	T	SNP	MASP1	ENST00000439271	human	ensembl	69_37n	-1	putative	silent	c.36	p.Q12	1.000	NULL	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	-	no_stop_codon:bad_bp_length_for_coding_region	MASP1	HGNC	ENSG00000127241	27	0	0	24	19	44.19	-	-	-	T	187009524	C	T	187009524	2	4	678	1	0	0	0	0	0	0	0	1	9393	928	32	2		2	MASP1	3	187009524	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	19957805	187009524	11012906	48	58793										
HTT	0	genome.wustl.edu	37	chr4	3179079	3179079	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgtttattggctttgtattGaaacagtttgaatacattga	9	3	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	4	3179079	3179079	G	A	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	silent	c.4428	p.L1476	1.000	prints_Huntingtin	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	204	0	0	201	82	28.98	-	-	-	A	3179079	G	A	3179079	2	1	678	1	0	0	0	0	0	0	0	1	7511	1281	45	2		2	HTT	4	3179079	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		3179079	187975197	49	58794										
AMBN	0	genome.wustl.edu	37	chr4	71469607	71469607	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgaacagaatgcccctgccaGacttggcatcatgagttcag	10	11	2	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	4	71469607	71469607	G	C	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.767	p.R256T	1.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	63	0	0	51	31	37.8	-	-	-	C	71469607	G	C	71469607	3	2	678	1	0	0	0	0	1	0	0	0	563	942	33	2	813	2	AMBN	4	71469607	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	68290528	71469607	119684669	50	58795										
HTR1A	0	genome.wustl.edu	37	chr5	63256550	63256550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcgggccagggccatcttgcGcttcgcctcggcgttgcgct	14	15	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	5	63256550	63256550	G	A	SNP	HTR1A	ENST00000323865	human	ensembl	69_37n	-1	known	missense	c.997	p.R333C	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394	39	0	0	40	18	31.03	-	-	-	A	63256550	G	A	63256550	3	1	678	1	0	0	0	0	1	0	0	0	7490	1087	38	1	274	1	HTR1A	5	63256550	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		63256550	117658710	51	58796										
MAST4	0	genome.wustl.edu	37	chr5	66398395	66398395	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctcccgcctgctgtgaccatGaaataattatgatgaaccat	7	11	0	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	5	66398395	66398395	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.1111	p.E371K	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	95	0	0	63	31	32.98	-	-	-	A	66398395	G	A	66398395	3	1	678	1	0	0	0	0	1	0	0	0	9398	1291	45	2	1266	2	MAST4	5	66398395	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	3141845	66398395	114516865	52	58797										
GPR98	0	genome.wustl.edu	37	chr5	89981683	89981683	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atgatgcatttggaactcttCagctctcagcaccaattgtc	7	11	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	5	89981683	89981683	C	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	nonsense	c.6361	p.Q2121*	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	79	0	0	77	37	32.46	-	-	-	T	89981683	C	T	89981683	4	4	678	1	0	0	0	0	0	1	0	0	6772	827	29	2	6475	2	GPR98	5	89981683	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	23583288	89981683	90933577	53	58798										
KIF13A	0	genome.wustl.edu	37	chr6	17773736	17773736	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	attccttcgaggagaatcccTgggtaaagttccataacatg	9	9	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	17773736	17773736	T	C	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.4297	p.R1433G	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	108	0	0	87	39	30.95	-	-	-	C	17773736	T	C	17773736	3	2	678	1	0	0	0	0	1	0	0	0	8326	1579	55	5	1161	5	KIF13A	6	17773736	Missense_Mutation	SNP	T	TCGA-D8-A1J9-01A-11D-A13L-09		17773736	153341331	54	58799										
BTN3A3	0	genome.wustl.edu	37	chr6	26452288	26452288	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gggatcttcctggactatgaGactggagagatctcgttcta	12	8	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	26452288	26452288	G	C	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	missense	c.1404	p.E468D	0.990	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	59	0	0	47	33	41.25	-	-	-	C	26452288	G	C	26452288	3	2	678	1	0	0	0	0	1	0	0	0	1573	933	33	2	1438	2	BTN3A3	6	26452288	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8678552	26452288	144662779	55	58800										
HIST1H2AM	0	genome.wustl.edu	37	chr6	27860646	27860646	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	actttaccaagcagcttgttGagctcctcgtcgttgcggat	10	11	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	27860646	27860646	G	A	SNP	HIST1H2AM	ENST00000359611	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AM	HGNC	ENSG00000233224	113	0	0	132	64	32.32	-	-	-	A	27860646	G	A	27860646	2	1	678	1	0	0	0	0	0	0	0	1	7190	1277	45	2		2	HIST1H2AM	6	27860646	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	1408358	27860646	143254421	56	58801										
DDR1	0	genome.wustl.edu	37	chr6	30864588	30864588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gggccccccagagtggatttCcctcgatctcgactccgctt	10	16	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	30864588	30864588	C	T	SNP	DDR1	ENST00000514434	human	ensembl	69_37n	1	novel	missense	c.289	p.P97S	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDR1	HGNC	ENSG00000204580	29	0	0	21	11	33.33	-	-	-	T	30864588	C	T	30864588	3	4	678	1	0	0	0	0	1	0	0	0	4367	854	30	2	1861	2	DDR1	6	30864588	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	3003942	30864588	140250479	57	58802										
DSE	0	genome.wustl.edu	37	chr6	116757740	116757740	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tacctgtggacaggtgaggcCacaggacagtctgcctttgc	13	11	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	116757740	116757740	C	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	silent	c.2166	p.A722	0.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	36	0	0	25	8	24.24	-	-	-	A	116757740	C	A	116757740	2	1	678	1	0	0	0	0	0	0	0	1	4809	581	21	4		4	DSE	6	116757740	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	85893152	116757740	54357327	58	58803										
TXLNB	0	genome.wustl.edu	37	chr6	139569014	139569014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cttttagttagtgtgctctgGaattcttcaaaccttcctga	7	9	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	139569014	139569014	G	C	SNP	TXLNB	ENST00000358430	human	ensembl	69_37n	-1	known	missense	c.1110	p.F370L	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNB	HGNC	ENSG00000164440	101	0	0	96	51	34.69	-	-	-	C	139569014	G	C	139569014	3	2	678	1	0	0	0	0	1	0	0	0	16885	1165	41	2	956	2	TXLNB	6	139569014	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	22811274	139569014	31546053	59	58804										
SYNE1	0	genome.wustl.edu	37	chr6	152847287	152847287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttcatgtcttcaaaaagatcGtccaccaccattggaggttt	7	10	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	6	152847287	152847287	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.153	p.D51	0.987	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	47	0	0	38	16	29.63	-	-	-	A	152847287	G	A	152847287	2	1	678	1	0	0	0	0	0	0	0	1	15537	1136	40	1		1	SYNE1	6	152847287	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	13278273	152847287	18267780	60	58805										
RBAK	0	genome.wustl.edu	37	chr7	5103430	5103430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aaaccctgactgaagagaaaGagaatacatttagtcaaatt	7	6	1	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	7	5103430	5103430	G	C	SNP	RBAK	ENST00000353796	human	ensembl	69_37n	1	known	missense	c.343	p.E115Q	0.115	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	88	0	0	16	41	71.93	-	-	-	C	5103430	G	C	5103430	3	2	678	1	0	0	0	0	1	0	0	0	13183	943	33	2	357	2	RBAK	7	5103430	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		5103430	154035233	61	58806										
HOXA6	0	genome.wustl.edu	37	chr7	27185451	27185451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cgccgtgtcaggtagcggttGaagtggaactccttctccag	13	11	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	7	27185451	27185451	G	C	SNP	HOXA6	ENST00000222728	human	ensembl	69_37n	-1	known	missense	c.528	p.F176L	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA6	HGNC	ENSG00000106006	87	0	0	34	46	57.5	-	-	-	C	27185451	G	C	27185451	3	2	678	1	0	0	0	0	1	0	0	0	7347	1281	45	2	177	2	HOXA6	7	27185451	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	22082021	27185451	131953212	62	58807										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74564242	74564242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccggaatcactctgtgctcaGaagttgaagatggaccacgt	11	10	3	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	7	74564242	74564242	G	C	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	missense	c.1989	p.Q663H	0.263	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	20	0	0	17	6	26.09	-	-	-	C	74564242	G	C	74564242	3	2	678	1	0	0	0	0	1	0	0	0	6921	933	33	2	2047	2	GTF2IRD2B	7	74564242	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	47378791	74564242	84574421	63	58808										
PTPRZ1	0	genome.wustl.edu	37	chr7	121650745	121650745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctaaaactgttcttagatctCcacatatgaacttgtcgggg	8	9	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	7	121650745	121650745	C	G	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.1645	p.P549A	0.079	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	46	0	0	30	9	23.08	-	-	-	G	121650745	C	G	121650745	3	3	678	1	0	0	0	0	1	0	0	0	12897	855	30	2	1691	2	PTPRZ1	7	121650745	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	47086503	121650745	37487918	64	58809										
CALD1	0	genome.wustl.edu	37	chr7	134643006	134643006	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cagcaatagtctccaagattGacagcagactggagcagtat	10	9	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	7	134643006	134643006	G	C	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.1339	p.D447H	1.000	pfam_Caldesmon_LSP,prints_Caldesmon	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	118	0	0	105	61	36.75	-	-	-	C	134643006	G	C	134643006	3	2	678	1	0	0	0	0	1	0	0	0	2606	1290	45	2	2117	2	CALD1	7	134643006	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	12992261	134643006	24495657	65	58810										
TPD52	0	genome.wustl.edu	37	chr8	80956423	80956423	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcatagcaggcatgctaattGaatgctgaatggaacgtata	10	6	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	8	80956423	80956423	G	C	SNP	TPD52	ENST00000448733	human	ensembl	69_37n	-1	known	nonsense	c.527	p.S176*	1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52	HGNC	ENSG00000076554	67	0	0	75	40	34.78	-	-	-	C	80956423	G	C	80956423	4	2	678	1	0	0	0	0	0	1	0	0	16493	1294	45	2	201	2	TPD52	8	80956423	Nonsense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		80956423	65407599	66	58811										
FREM1	0	genome.wustl.edu	37	chr9	14776228	14776228	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aagagaggcaaggcagccttCagcatggattcttgtgtcac	12	9	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	14776228	14776228	C	T	SNP	FREM1	ENST00000380894	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	26	0	0	13	4	23.53	-	-	-	T	14776228	C	T	14776228	2	4	678	1	0	0	0	0	0	0	0	1	6093	813	29	2		2	FREM1	9	14776228	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		14776228	126437203	67	58812										
TAF1L	0	genome.wustl.edu	37	chr9	32631492	32631492	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	agctgctgtttaggaaacttGagaaccagagattttctgcg	11	7	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	32631492	32631492	G	C	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.4086	p.L1362	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	131	0	0	55	60	52.17	-	-	-	C	32631492	G	C	32631492	2	2	678	1	0	0	0	0	0	0	0	1	15615	1277	45	2		2	TAF1L	9	32631492	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	17855264	32631492	108581939	68	58813										
TRPM6	0	genome.wustl.edu	37	chr9	77397680	77397680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gctagactccaagatggtggCtcttttggcgaaaggatggc	14	8	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	77397680	77397680	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.3009	p.E1003D	0.967	pfam_Ion_trans_dom	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	78	0	0	77	17	18.09	-	-	-	A	77397680	C	A	77397680	3	1	678	1	0	0	0	0	1	0	0	0	16686	796	28	4	3131	4	TRPM6	9	77397680	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	44766188	77397680	63815751	69	58814										
ZCCHC6	0	genome.wustl.edu	37	chr9	88916365	88916365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccgcattggcttggctttctGaggtgtgcactgtatgggct	14	9	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	88916365	88916365	G	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	missense	c.4246	p.Q1416E	0.899	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	136	0	0	126	62	32.8	-	-	-	C	88916365	G	C	88916365	3	2	678	1	0	0	0	0	1	0	0	0	17688	1299	45	2	249	2	ZCCHC6	9	88916365	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	11518685	88916365	52297066	70	58815										
ECM2	0	genome.wustl.edu	37	chr9	95277329	95277329	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcacttcttcatcctcctcaGattgaagtgcttcttttctt	4	12	6	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	95277329	95277329	G	A	SNP	ECM2	ENST00000344604	human	ensembl	69_37n	-1	known	missense	c.638	p.S213F	0.013	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823	87	0	0	131	21	13.73	-	-	-	A	95277329	G	A	95277329	3	1	678	1	0	0	0	0	1	0	0	0	4933	942	33	2	1489	2	ECM2	9	95277329	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	6360964	95277329	45936102	71	58816										
MED27	0	genome.wustl.edu	37	chr9	134736049	134736049	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggaacagctttatgtaacttCttaaccaggtctaaaaagag	8	7	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	9	134736049	134736049	C	A	SNP	MED27	ENST00000292035	human	ensembl	69_37n	-1	known	missense	c.812	p.R271I	1.000	pfam_Mediator_Med27	pfam_Mediator_Med27	-	no_errors	MED27	HGNC	ENSG00000160563	28	0	0	17	40	70.18	-	-	-	A	134736049	C	A	134736049	3	1	678	1	0	0	0	0	1	0	0	0	9516	913	32	2	127	2	MED27	9	134736049	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	39458720	134736049	6477382	72	58817										
KIAA0913	0	genome.wustl.edu	37	chr10	75557294	75557294	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttcggactccctgggctcctCatcctccagtggaagtcgcc	10	16	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	10	75557294	75557294	C	T	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	missense	c.3593	p.S1198L	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	35	0	0	21	11	34.38	-	-	-	T	75557294	C	T	75557294	3	4	678	1	0	0	0	0	1	0	0	0	8252	838	29	2	3663	2	KIAA0913	10	75557294	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		75557294	59977453	73	58818										
PDCD11	0	genome.wustl.edu	37	chr10	105176260	105176260	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcccctaggttttgctttgtGaccctgaagccaagaagctg	10	11	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	10	105176260	105176260	G	C	SNP	PDCD11	ENST00000369797	human	ensembl	69_37n	1	known	missense	c.1531	p.D511H	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843	64	0	0	37	17	31.48	-	-	-	C	105176260	G	C	105176260	3	2	678	1	0	0	0	0	1	0	0	0	11690	1290	45	2	1577	2	PDCD11	10	105176260	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	29618966	105176260	30358487	74	58819										
TDRD1	0	genome.wustl.edu	37	chr10	115986858	115986858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggaattgaatggaagctcttCtcaattaataataatgctat	7	5	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	10	115986858	115986858	C	G	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	missense	c.3203	p.S1068C	1.000	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	30	0	0	28	13	31.71	-	-	-	G	115986858	C	G	115986858	3	3	678	1	0	0	0	0	1	0	0	0	15825	913	32	2	3289	2	TDRD1	10	115986858	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	10810598	115986858	19547889	75	58820										
CYP2E1	0	genome.wustl.edu	37	chr10	135340993	135340993	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aggtgcacagcagctggaatCtgcccccaggccctttcccg	11	16	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	10	135340993	135340993	C	G	SNP	CYP2E1	ENST00000252945	human	ensembl	69_37n	1	known	missense	c.94	p.L32V	0.875	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649	18	0	0	12	6	33.33	-	-	-	G	135340993	C	G	135340993	3	3	678	1	0	0	0	0	1	0	0	0	4201	912	32	2	96	2	CYP2E1	10	135340993	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	19354135	135340993	193754	76	58821										
DPF2	0	genome.wustl.edu	37	chr11	65113788	65113788	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	acataccgctggcagtgcatCgagtgcaaatgttgcaatat	10	9	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	65113788	65113788	C	T	SNP	DPF2	ENST00000528416	human	ensembl	69_37n	1	known	silent	c.975	p.I325	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884	72	0	0	107	41	27.7	-	-	-	T	65113788	C	T	65113788	2	4	678	1	0	0	0	0	0	0	0	1	4752	874	31	1		1	DPF2	11	65113788	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		65113788	69892728	77	58822										
CCDC87	0	genome.wustl.edu	37	chr11	66360198	66360198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	actaagttcggcgggcggctCccgccagctgcacttcagct	12	15	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	66360198	66360198	C	T	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.289	p.E97K	1.000	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	24	0	0	22	10	31.25	-	-	-	T	66360198	C	T	66360198	3	4	678	1	0	0	0	0	1	0	0	0	2889	864	30	2	2264	2	CCDC87	11	66360198	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	1246410	66360198	68646318	78	58823										
CCS	0	genome.wustl.edu	37	chr11	66373005	66373005	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgattattgatgagggagaaGatgacctgggccggggaggc	18	5	0	6			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	66373005	66373005	G	T	SNP	CCS	ENST00000533244	human	ensembl	69_37n	1	known	missense	c.613	p.D205Y	1.000	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom,prints_SOD_Cu_Zn_dom	pfam_SOD_Cu_Zn_dom,pfam_HeavyMe-assoc_HMA,superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_SOD_Cu_Zn_dom	-	no_errors	CCS	HGNC	ENSG00000173992	58	0	0	90	25	21.74	-	-	-	T	66373005	G	T	66373005	3	4	678	1	0	0	0	0	1	0	0	0	2981	942	33	2	639	2	CCS	11	66373005	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	12807	66373005	68633511	79	58824										
LRTOMT	0	genome.wustl.edu	37	chr11	71819713	71819713	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctacgcacccagtatcagctGagtcgggcagacctggtgct	12	13	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	71819713	71819713	G	A	SNP	LRTOMT	ENST00000307198	human	ensembl	69_37n	1	known	silent	c.618	p.L206	0.630	pfam_O-MeTrfase_3	pfam_O-MeTrfase_3	-	no_errors	LRTOMT	HGNC	ENSG00000184154	17	0	0	37	12	24	-	-	-	A	71819713	G	A	71819713	2	1	678	1	0	0	0	0	0	0	0	1	9112	1277	45	2		2	LRTOMT	11	71819713	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	5446708	71819713	63186803	80	58825										
ATM	0	genome.wustl.edu	37	chr11	108124566	108124566	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	accaccaaaaagataaagaaGaactttcattctcagaagta	5	8	2	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	108124566	108124566	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.1924	p.E642K	0.994	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	68	0	0	13	32	71.11	-	-	-	A	108124566	G	A	108124566	3	1	678	1	0	0	0	0	1	0	0	0	1113	943	33	2	1970	2	ATM	11	108124566	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	36304853	108124566	26881950	81	58826										
CD3G	0	genome.wustl.edu	37	chr11	118220523	118220523	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tacttctgacttgtgatgcaGaagccaaaaatatcacatgg	8	8	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	11	118220523	118220523	G	A	SNP	CD3G	ENST00000532917	human	ensembl	69_37n	1	known	missense	c.145	p.E49K	0.000	smart_Ig_sub2	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654	77	0	0	36	5	12.2	-	-	-	A	118220523	G	A	118220523	3	1	678	1	0	0	0	0	1	0	0	0	3042	943	33	2	155	2	CD3G	11	118220523	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	10095957	118220523	16785993	82	58827										
C12orf5	0	genome.wustl.edu	37	chr12	4433901	4433901	+	RNA	DEL	T	T	-													0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgctcgcaggacacgtcccgTcccgcagctggtccaagtct							TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	4433901	4433901	T	-	DEL	C12orf5	ENST00000539671	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.999	-	-	-	no_errors	C12orf5	HGNC	ENSG00000078237	9	0	0	4	2	33.33	-	-	-	-	4433901	T	-	4433901	6	5	678	0	1	1	0	1	0	0	0	0	1706	1682	58	0		0	C12orf5	12	4433901	RNA	DEL	T	TCGA-D8-A1J9-01A-11D-A13L-09		4433901	129417994	83	58828										
GALNT8	0	genome.wustl.edu	37	chr12	4853841	4853841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	acgtggtcgccatcttggatGctcacattgaagtcaatgtt	10	9	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	4853841	4853841	G	T	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	missense	c.835	p.A279S	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	19	0	0	38	14	26.92	-	-	-	T	4853841	G	T	4853841	3	4	678	1	0	0	0	0	1	0	0	0	6269	1319	46	4	849	4	GALNT8	12	4853841	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	419940	4853841	128998054	84	58829										
GRIN2B	0	genome.wustl.edu	37	chr12	13716151	13716151	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gctctcgccagctgacatctCaaacatgtgggcgtaggggc	13	12	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	13716151	13716151	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.4021	p.E1341Q	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	54	0	0	48	19	28.36	-	-	-	G	13716151	C	G	13716151	3	3	678	1	0	0	0	0	1	0	0	0	6831	835	29	2	437	2	GRIN2B	12	13716151	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	8862310	13716151	120135744	85	58830										
ATF7IP	0	genome.wustl.edu	37	chr12	14614037	14614037	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttagtacttcgtctgctgcaGaacagaacagcaataccacc	7	12	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	14614037	14614037	G	A	SNP	ATF7IP	ENST00000261168	human	ensembl	69_37n	1	known	missense	c.2767	p.E923K	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681	29	0	0	22	11	33.33	-	-	-	A	14614037	G	A	14614037	3	1	678	1	0	0	0	0	1	0	0	0	1091	943	33	2	2797	2	ATF7IP	12	14614037	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	897886	14614037	119237858	86	58831										
PLBD1	0	genome.wustl.edu	37	chr12	14688722	14688722	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgagcaaaaaggatgttctCaaatccaggaagaacctaca	9	8	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	14688722	14688722	C	T	SNP	PLBD1	ENST00000240617	human	ensembl	69_37n	-1	known	missense	c.715	p.E239K	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	57	0	0	54	26	32.5	-	-	-	T	14688722	C	T	14688722	3	4	678	1	0	0	0	0	1	0	0	0	12099	835	29	2	970	2	PLBD1	12	14688722	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	74685	14688722	119163173	87	58832										
SLCO1B3	0	genome.wustl.edu	37	chr12	21033899	21033899	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgggaacaatggaataacttAcctgtcaccttgtctagcag	9	9	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	21033899	21033899	A	T	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.1442	p.Y481F	0.872	pfam_OA_transporter,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	83	0	0	81	40	32.52	-	-	-	T	21033899	A	T	21033899	3	4	678	1	0	0	0	0	1	0	0	0	14813	391	14	5	1480	5	SLCO1B3	12	21033899	Missense_Mutation	SNP	A	TCGA-D8-A1J9-01A-11D-A13L-09	6345177	21033899	112817996	88	58833										
SCN8A	0	genome.wustl.edu	37	chr12	52082602	52082602	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctacgcactttcagggtactGagggctttgaaaactatttc	9	9	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	52082602	52082602	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	silent	c.675	p.L225	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	144	0	0	127	71	35.86	-	-	-	A	52082602	G	A	52082602	2	1	678	1	0	0	0	0	0	0	0	1	14012	1277	45	2		2	SCN8A	12	52082602	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	31048703	52082602	81769293	89	58834										
MBD6	0	genome.wustl.edu	37	chr12	57920417	57920417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgtgcttcaaagcccatccGaaggactggggatgggggca	15	10	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	57920417	57920417	G	A	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	missense	c.1489	p.E497K	0.865	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987	12	0	0	15	8	34.78	-	-	-	A	57920417	G	A	57920417	3	1	678	1	0	0	0	0	1	0	0	0	9419	1059	37	1	1507	1	MBD6	12	57920417	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	5837815	57920417	75931478	90	58835										
DEPDC4	0	genome.wustl.edu	37	chr12	100657603	100657603	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atgcctccttctttttatttCcacttgggcctgaagagagt	8	10	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	100657603	100657603	C	G	SNP	DEPDC4	ENST00000378244	human	ensembl	69_37n	-1	known	missense	c.226	p.E76Q	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC4	HGNC	ENSG00000166153	52	0	0	73	11	13.1	-	-	-	G	100657603	C	G	100657603	3	3	678	1	0	0	0	0	1	0	0	0	4477	864	30	2	674	2	DEPDC4	12	100657603	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	42737186	100657603	33194292	91	58836										
ALDH1L2	0	genome.wustl.edu	37	chr12	105440687	105440687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cttatcttacccgagtggctCtttcttggtgaaggtcagat	10	9	4	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	105440687	105440687	C	G	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	missense	c.1747	p.E583Q	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	155	0	0	133	59	30.73	-	-	-	G	105440687	C	G	105440687	3	3	678	1	0	0	0	0	1	0	0	0	495	922	32	2	1064	2	ALDH1L2	12	105440687	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4783084	105440687	28411208	92	58837										
CLIP1	0	genome.wustl.edu	37	chr12	122825432	122825432	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cgaagtgcatcaagatccaaGagcttttcttcagtagcctt	8	10	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	12	122825432	122825432	G	C	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	silent	c.2319	p.L773	0.925	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	118	0	0	105	64	37.87	-	-	-	C	122825432	G	C	122825432	2	2	678	1	0	0	0	0	0	0	0	1	3562	929	33	2		2	CLIP1	12	122825432	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	17384745	122825432	11026463	93	58838										
NIN	0	genome.wustl.edu	37	chr14	51219447	51219447	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggtttttgatttttaattctGaaatctaattaaaattaaaa	4	2	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	51219447	51219447	G	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.4739	p.S1580L	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	109	0	0	64	46	41.82	-	-	-	A	51219447	G	A	51219447	3	1	678	1	0	0	0	0	1	0	0	0	10489	1294	45	2	1854	2	NIN	14	51219447	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		51219447	56130093	94	58839										
NIN	0	genome.wustl.edu	37	chr14	51233599	51233599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tagaagctcattttccagacGactgttttcctgaacaagta	7	9	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	51233599	51233599	G	T	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.1444	p.R482S	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	118	0	0	119	72	37.7	-	-	-	T	51233599	G	T	51233599	3	4	678	1	0	0	0	0	1	0	0	0	10489	1058	37	3	5181	3	NIN	14	51233599	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	14152	51233599	56115941	95	58840										
PYGL	0	genome.wustl.edu	37	chr14	51376618	51376618	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aagctattctcttaccctttCttgtccaaagcagccacatc	4	14	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	51376618	51376618	C	G	SNP	PYGL	ENST00000216392	human	ensembl	69_37n	-1	known	missense	c.2172	p.K724N	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504	66	0	0	46	31	40.26	-	-	-	G	51376618	C	G	51376618	3	3	678	1	0	0	0	0	1	0	0	0	12944	912	32	2	387	2	PYGL	14	51376618	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	143019	51376618	55972922	96	58841										
PAPLN	0	genome.wustl.edu	37	chr14	73729310	73729310	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tggtggcggcagcagtcctgCaggcgagcaggaacccagcc	16	13	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	73729310	73729310	C	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	1	known	missense	c.2498	p.A833E	0.004	NULL	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	9	0	0	11	7	38.89	-	-	-	A	73729310	C	A	73729310	3	1	678	1	0	0	0	0	1	0	0	0	11501	710	25	4	2483	4	PAPLN	14	73729310	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	22352692	73729310	33620230	97	58842										
CATSPERB	0	genome.wustl.edu	37	chr14	92083994	92083994	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tattacataactgtcagtatCatcaaaagtcacttcagctg	5	9	5	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	92083994	92083994	C	T	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	missense	c.2347	p.D783N	0.269	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	85	0	0	70	43	38.05	-	-	-	T	92083994	C	T	92083994	3	4	678	1	0	0	0	0	1	0	0	0	2716	826	29	2	1035	2	CATSPERB	14	92083994	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	18354684	92083994	15265546	98	58843										
INF2	0	genome.wustl.edu	37	chr14	105175628	105175628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cctgctccagctccaacgagGaggtcgctgctatgatccgg	12	14	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	14	105175628	105175628	G	A	SNP	INF2	ENST00000392634	human	ensembl	69_37n	1	known	missense	c.1960	p.E654K	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_WH2_dom,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	43	0	0	19	13	40.62	-	-	-	A	105175628	G	A	105175628	3	1	678	1	0	0	0	0	1	0	0	0	7788	1175	41	2	2002	2	INF2	14	105175628	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	13091634	105175628	2173912	99	58844										
APH1B	0	genome.wustl.edu	37	chr15	63569883	63569884	+	Frame_Shift_Del	DEL	TA	TA	-													0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcgggcctgcgctcgcccttTatgtcttcaccatcgccacc							TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	15	63569883	63569884	TA	-	DEL	APH1B	ENST00000261879	human	ensembl	69_37n	1	known	frame_shift_del	c.61_62	p.Y21fs	0.986:0.882	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1B	HGNC	ENSG00000138613	34	0	0	16	7	30.43	-	-	-	-	63569884	TA	-	63569883	7	5	678	1	0	1	0	1	0	0	0	0	773	1754	61	0	63	0	APH1B	15	63569883	Frame_Shift_Del	DEL	TA	TCGA-D8-A1J9-01A-11D-A13L-09		63569883	38961509	100	58845										
HERC1	0	genome.wustl.edu	37	chr15	63958297	63958297	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcatgcccagggtgctctatCatccacatggcaaggacagt	10	12	3	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	15	63958297	63958297	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.8376	p.M2792I	1.000	superfamily_UBA-like	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	35	0	0	20	16	44.44	-	-	-	T	63958297	C	T	63958297	3	4	678	1	0	0	0	0	1	0	0	0	7108	826	29	2	6357	2	HERC1	15	63958297	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	388414	63958297	38573095	101	58846										
BNC1	0	genome.wustl.edu	37	chr15	83931995	83931995	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgctgcagttccatgtagtCagaaaaaggaacttggggtt	12	7	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	15	83931995	83931995	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2008	p.D670N	0.805	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	73	0	0	55	17	23.61	-	-	-	T	83931995	C	T	83931995	3	4	678	1	0	0	0	0	1	0	0	0	1479	826	29	2	984	2	BNC1	15	83931995	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	19973698	83931995	18599397	102	58847										
CHTF18	0	genome.wustl.edu	37	chr16	844160	844160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	agcgattctaccgtgtcctgCatgccgctgcctctgcgggc	12	15	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	844160	844160	C	A	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	missense	c.2536	p.H846N	0.995	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	19	0	0	27	11	28.95	-	-	-	A	844160	C	A	844160	3	1	678	1	0	0	0	0	1	0	0	0	3443	710	25	4	1967	4	CHTF18	16	844160	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		844160	89510593	103	58848										
IFT140	0	genome.wustl.edu	37	chr16	1570261	1570261	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgcaggtagttagcagccatGatgtagatttccttctgcct	10	9	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	1570261	1570261	G	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.3744	p.I1248	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	93	0	0	94	29	23.58	-	-	-	A	1570261	G	A	1570261	2	1	678	1	0	0	0	0	0	0	0	1	7610	1280	45	2		2	IFT140	16	1570261	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	726101	1570261	88784492	104	58849										
GRIN2A	0	genome.wustl.edu	37	chr16	9934583	9934583	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtttccacaaagggcacagaGaagtccaccacttcagaacg	9	12	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	9934583	9934583	G	C	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.1572	p.F524L	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	47	0	0	68	16	19.05	-	-	-	C	9934583	G	C	9934583	3	2	678	1	0	0	0	0	1	0	0	0	6830	933	33	2	2850	2	GRIN2A	16	9934583	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8364322	9934583	80420170	105	58850										
SLC5A11	0	genome.wustl.edu	37	chr16	24921688	24921688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccagaaggaacaagcaccacCagcagctcccttgtctctta	7	15	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	24921688	24921688	C	T	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	missense	c.1712	p.P571L	0.380	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	36	0	0	81	47	36.43	-	-	-	T	24921688	C	T	24921688	3	4	678	1	0	0	0	0	1	0	0	0	14752	594	21	4	1766	4	SLC5A11	16	24921688	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	14987105	24921688	65433065	106	58851										
NSMCE1	0	genome.wustl.edu	37	chr16	27238062	27238062	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tggatgaggaggctgtgacaGatattgcagatcttcaccgc	13	8	2	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	27238062	27238062	G	A	SNP	NSMCE1	ENST00000361439	human	ensembl	69_37n	-1	known	silent	c.579	p.I193	1.000	pfam_Znf_RING-like,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Znf_RING	pfam_SMC_Nse1,pfam_Znf_RING-like,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Znf_RING	-	no_errors	NSMCE1	HGNC	ENSG00000169189	30	0	0	28	7	20	-	-	-	A	27238062	G	A	27238062	2	1	678	1	0	0	0	0	0	0	0	1	10748	932	33	2		2	NSMCE1	16	27238062	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2316374	27238062	63116691	107	58852										
TBC1D10B	0	genome.wustl.edu	37	chr16	30369766	30369766	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgccgccggcgctcctcgtgGatggcccgggacccatgcag	15	16	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	30369766	30369766	G	C	SNP	TBC1D10B	ENST00000409939	human	ensembl	69_37n	-1	known	missense	c.1926	p.I642M	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	18	0	0	22	15	40.54	-	-	-	C	30369766	G	C	30369766	3	2	678	1	0	0	0	0	1	0	0	0	15691	1164	41	2	504	2	TBC1D10B	16	30369766	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	3131704	30369766	59984987	108	58853										
SETD1A	0	genome.wustl.edu	37	chr16	30976309	30976309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	acacctcctacctgccccccGagcccagccggcccaccgac	7	24	0	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	30976309	30976309	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	1	known	missense	c.1246	p.E416K	0.822	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	17	0	0	33	10	23.26	-	-	-	A	30976309	G	A	30976309	3	1	678	1	0	0	0	0	1	0	0	0	14218	1059	37	1	1268	1	SETD1A	16	30976309	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	606543	30976309	59378444	109	58854										
CDH16	0	genome.wustl.edu	37	chr16	66946466	66946466	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgtgactgcgacttcgacttCacacgtgctgctgaagccta	10	12	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	66946466	66946466	C	A	SNP	CDH16	ENST00000299752	human	ensembl	69_37n	-1	known	nonsense	c.1300	p.E434*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589	79	0	0	25	24	48.98	-	-	-	A	66946466	C	A	66946466	4	1	678	1	0	0	0	0	0	1	0	0	3130	835	29	2	1221	2	CDH16	16	66946466	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	35970157	66946466	23408287	110	58855										
FUK	0	genome.wustl.edu	37	chr16	70513502	70513502	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggccttgggaattacagcatCcacctggttgaagtggacac	12	10	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	70513502	70513502	C	T	SNP	FUK	ENST00000378912	human	ensembl	69_37n	1	known	silent	c.3192	p.I1064	1.000	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	77	0	0	25	32	56.14	-	-	-	T	70513502	C	T	70513502	2	4	678	1	0	0	0	0	0	0	0	1	6145	845	30	2		2	FUK	16	70513502	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	3567036	70513502	19841251	111	58856										
RFWD3	0	genome.wustl.edu	37	chr16	74670451	74670451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttgctgtaaattctgactttGatgtgacgtaagtttttgca	9	5	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	74670451	74670451	G	C	SNP	RFWD3	ENST00000361070	human	ensembl	69_37n	-1	known	missense	c.1219	p.Q407E	0.014	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING	-	no_errors	RFWD3	HGNC	ENSG00000168411	62	0	0	29	36	55.38	-	-	-	C	74670451	G	C	74670451	3	2	678	1	0	0	0	0	1	0	0	0	13344	1299	45	2	1129	2	RFWD3	16	74670451	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	4156949	74670451	15684302	112	58857										
SDR42E1	0	genome.wustl.edu	37	chr16	82033756	82033756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tataaacttgattccttctgGaatggtttgagcagggctgc	11	7	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	82033756	82033756	G	T	SNP	SDR42E1	ENST00000328945	human	ensembl	69_37n	-1	known	missense	c.142	p.P48T	1.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like	-	no_errors	SDR42E1	HGNC	ENSG00000184860	68	0	0	40	39	49.37	-	-	-	T	82033756	G	T	82033756	3	4	678	1	0	0	0	0	1	0	0	0	14061	1174	41	2	1043	2	SDR42E1	16	82033756	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	7363305	82033756	8320997	113	58858										
FANCA	0	genome.wustl.edu	37	chr16	89882319	89882319	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cattcaggtcctgatggcttCgcaggaggcgcacagctgat	13	11	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	16	89882319	89882319	C	A	SNP	FANCA	ENST00000389301	human	ensembl	69_37n	-1	known	missense	c.155	p.R52L	0.488	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741	79	0	0	23	30	56.6	-	-	-	A	89882319	C	A	89882319	3	1	678	1	0	0	0	0	1	0	0	0	5708	884	31	3	4385	3	FANCA	16	89882319	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	7848563	89882319	472434	114	58859										
USP6	0	genome.wustl.edu	37	chr17	5048769	5048769	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tccatgggcagctaagatctCaagtcaaatgcaagacatgt	9	9	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	5048769	5048769	C	T	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	nonsense	c.2062	p.Q688*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	168	0	0	124	15	10.71	-	-	-	T	5048769	C	T	5048769	4	4	678	1	0	0	0	0	0	1	0	0	17183	827	29	2	2132	2	USP6	17	5048769	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		5048769	76146441	115	58860										
TP53	0	genome.wustl.edu	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	7578413	7578413	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.517	p.V173L	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	12	14	53.85	-	-	-	A	7578413	C	A	7578413	3	1	678	1	0	0	0	0	1	0	0	0	16477	478	17	4	781	4	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	2529644	7578413	73616797	116	58861										
DRG2	0	genome.wustl.edu	37	chr17	17997277	17997277	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggcgctgattggatttccctCtgtgggtaaggtcagtgatg	15	7	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	17997277	17997277	C	G	SNP	DRG2	ENST00000225729	human	ensembl	69_37n	1	known	missense	c.215	p.S72C	1.000	pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591	139	0	0	119	57	32.39	-	-	-	G	17997277	C	G	17997277	3	3	678	1	0	0	0	0	1	0	0	0	4797	913	32	2	221	2	DRG2	17	17997277	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	10418864	17997277	63197933	117	58862										
SUPT6H	0	genome.wustl.edu	37	chr17	27000441	27000441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgtctgattttgtggaaagcGaggctgaggagtcagaggaa	16	4	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	27000441	27000441	G	A	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.22	p.E8K	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	74	0	0	83	38	31.4	-	-	-	A	27000441	G	A	27000441	3	1	678	1	0	0	0	0	1	0	0	0	15491	1059	37	1	24	1	SUPT6H	17	27000441	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	9003164	27000441	54194769	118	58863										
RAB11FIP4	0	genome.wustl.edu	37	chr17	29761087	29761087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgaaggatgtgctgtcggtgGagagcgcggggacgctgccg	20	8	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	29761087	29761087	G	C	SNP	RAB11FIP4	ENST00000325874	human	ensembl	69_37n	1	known	missense	c.283	p.E95Q	0.995	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242	19	0	0	51	13	20.31	-	-	-	C	29761087	G	C	29761087	3	2	678	1	0	0	0	0	1	0	0	0	12979	1175	41	2	293	2	RAB11FIP4	17	29761087	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2760646	29761087	51434123	119	58864										
ACACA	0	genome.wustl.edu	37	chr17	35597396	35597396	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcaggaagaggcttaccattCtggaattgtgtctctactcg	10	9	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	35597396	35597396	C	G	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	missense	c.3117	p.Q1039H	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	48	0	0	103	24	18.9	-	-	-	G	35597396	C	G	35597396	3	3	678	1	0	0	0	0	1	0	0	0	106	912	32	2	4166	2	ACACA	17	35597396	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	5836309	35597396	45597814	120	58865										
CWC25	0	genome.wustl.edu	37	chr17	36966009	36966009	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ggggaggaatttgccatcttCttctgtgatctaagagatca	11	7	5	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	36966009	36966009	C	A	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	missense	c.636	p.K212N	1.000	NULL	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	81	0	0	24	41	63.08	-	-	-	A	36966009	C	A	36966009	3	1	678	1	0	0	0	0	1	0	0	0	4100	912	32	2	661	2	CWC25	17	36966009	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	1368613	36966009	44229201	121	58866										
GRB7	0	genome.wustl.edu	37	chr17	37899229	37899229	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccacagctcgccacgtgtgtGaaatgctggtgcagcgagct	13	12	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	37899229	37899229	G	C	SNP	GRB7	ENST00000445327	human	ensembl	69_37n	1	known	missense	c.454	p.E152Q	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738	30	0	0	346	63	15.4	-	-	-	C	37899229	G	C	37899229	3	2	678	1	0	0	0	0	1	0	0	0	6810	1291	45	2	395	2	GRB7	17	37899229	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	933220	37899229	43295981	122	58867										
WNK4	0	genome.wustl.edu	37	chr17	40948000	40948000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gagcagcgaggagtcagaaaGcagtggggaagatgaggagt	19	4	1	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	40948000	40948000	G	A	SNP	WNK4	ENST00000246914	human	ensembl	69_37n	1	known	missense	c.3380	p.S1127N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK4	HGNC	ENSG00000126562	43	0	0	17	23	57.5	-	-	-	A	40948000	G	A	40948000	3	1	678	1	0	0	0	0	1	0	0	0	17477	971	34	4	3442	4	WNK4	17	40948000	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	3048771	40948000	40247210	123	58868										
ACSF2	0	genome.wustl.edu	37	chr17	48551306	48551306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aagagatttgtgcctgcattCggctgaaggacggggaggag	17	6	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	17	48551306	48551306	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	missense	c.1669	p.R557W	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	85	0	0	34	36	51.43	-	-	-	T	48551306	C	T	48551306	3	4	678	1	0	0	0	0	1	0	0	0	175	875	31	1	1723	1	ACSF2	17	48551306	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	7603306	48551306	32643904	124	58869										
MAPK4	0	genome.wustl.edu	37	chr18	48255621	48255621	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gacccgcgcgcgggttcggcGccactggctgaggacgtgca	17	14	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	18	48255621	48255621	G	A	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	silent	c.1161	p.A387	0.047	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	19	0	0	11	8	42.11	-	-	-	A	48255621	G	A	48255621	2	1	678	1	0	0	0	0	0	0	0	1	9351	1074	38	1		1	MAPK4	18	48255621	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		48255621	29821627	125	58870										
ZNF532	0	genome.wustl.edu	37	chr18	56587083	56587083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccaaactcgtgccaaagactGtgcaccttgccaaccttaac	6	15	0	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	18	56587083	56587083	G	T	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	missense	c.1564	p.V522L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	34	0	0	26	19	42.22	-	-	-	T	56587083	G	T	56587083	3	4	678	1	0	0	0	0	1	0	0	0	18068	1377	48	4	1566	4	ZNF532	18	56587083	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8331462	56587083	21490165	126	58871										
MUC16	0	genome.wustl.edu	37	chr19	8976844	8976844	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aagttgagtgtgagggtcttCaggtggtaccccatggctgc	15	8	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	8976844	8976844	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.42222	p.L14074	0.022	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	100	0	0	65	45	40.91	-	-	-	T	8976844	C	T	8976844	2	4	678	1	0	0	0	0	0	0	0	1	10045	813	29	2		2	MUC16	19	8976844	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		8976844	50152139	127	58872										
ZNF846	0	genome.wustl.edu	37	chr19	9868536	9868536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	catgttgactaagcattgagGaattattaaaggctttccca	8	7	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	9868536	9868536	G	A	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.1217	p.S406F	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	106	0	0	57	33	36.26	-	-	-	A	9868536	G	A	9868536	3	1	678	1	0	0	0	0	1	0	0	0	18285	1174	41	2	388	2	ZNF846	19	9868536	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	891692	9868536	49260447	128	58873										
ZNF564	0	genome.wustl.edu	37	chr19	12638670	12638670	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ttaagattgagaatctgactGaaggcttctccacattgatc	8	8	2	5			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	12638670	12638670	G	A	SNP	ZNF564	ENST00000339282	human	ensembl	69_37n	-1	known	silent	c.252	p.F84	0.782	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	35	0	0	28	15	34.88	-	-	-	A	12638670	G	A	12638670	2	1	678	1	0	0	0	0	0	0	0	1	18091	1281	45	2		2	ZNF564	19	12638670	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2770134	12638670	46490313	129	58874										
NWD1	0	genome.wustl.edu	37	chr19	16860225	16860225	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tgaaccccaagaacaagactCacgcctgctacctgaaggag	9	13	1	4			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	16860225	16860225	C	G	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.772	p.H258D	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	19	0	0	14	12	46.15	-	-	-	G	16860225	C	G	16860225	3	3	678	1	0	0	0	0	1	0	0	0	10854	826	29	2	373	2	NWD1	19	16860225	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4221555	16860225	42268758	130	58875										
USE1	0	genome.wustl.edu	37	chr19	17330038	17330038	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcagtggagtggcagggtccCagccagtgagtgagaagcag	17	8	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	17330038	17330038	C	T	SNP	USE1	ENST00000263897	human	ensembl	69_37n	1	known	nonsense	c.439	p.Q147*	0.098	pfam_Vesicle_transport_protein_Use1	pfam_Vesicle_transport_protein_Use1	-	no_errors	USE1	HGNC	ENSG00000053501	43	0	0	20	11	35.48	-	-	-	T	17330038	C	T	17330038	4	4	678	1	0	0	0	0	0	1	0	0	17128	595	21	4	465	4	USE1	19	17330038	Nonsense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	469813	17330038	41798945	131	58876										
JAK3	0	genome.wustl.edu	37	chr19	17949174	17949174	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgggtgggctgtgacctctCtggaccacgatcaggttgga	16	9	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	17949174	17949174	C	G	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.1467	p.Q489H	0.985	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	164	0	0	107	46	30.07	-	-	-	G	17949174	C	G	17949174	3	3	678	1	0	0	0	0	1	0	0	0	7993	912	32	2	1963	2	JAK3	19	17949174	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	619136	17949174	41179809	132	58877										
CYP2A7	0	genome.wustl.edu	37	chr19	41388071	41388071	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gacatcaagaccatcacagtCaggcaggccagcaaggccac	10	14	3	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	41388071	41388071	C	T	SNP	CYP2A7	ENST00000301146	human	ensembl	69_37n	-1	known	silent	c.45	p.L15	0.010	prints_Cyt_P450_E_grp-I_CYP2B-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077	60	0	0	72	47	39.17	-	-	-	T	41388071	C	T	41388071	2	4	678	1	0	0	0	0	0	0	0	1	4194	813	29	2		2	CYP2A7	19	41388071	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	23438897	41388071	17740912	133	58878										
CYP2A13	0	genome.wustl.edu	37	chr19	41595962	41595962	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	acctccccaggcgtggcgttCagcaacggggagcgcgccaa	14	15	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	41595962	41595962	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	silent	c.354	p.F118	0.983	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	8	0	0	9	6	40	-	-	-	T	41595962	C	T	41595962	2	4	678	1	0	0	0	0	0	0	0	1	4192	825	29	2		2	CYP2A13	19	41595962	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	207891	41595962	17533021	134	58879										
PSG4	0	genome.wustl.edu	37	chr19	43699148	43699148	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aggaacaaaagatactcacaGaggacattcagggtgactgg	12	7	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	43699148	43699148	G	A	SNP	PSG4	ENST00000405312	human	ensembl	69_37n	-1	known	silent	c.987	p.L329	0.476	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG4	HGNC	ENSG00000243137	131	0	0	110	89	44.72	-	-	-	A	43699148	G	A	43699148	2	1	678	1	0	0	0	0	0	0	0	1	12737	956	33	2		2	PSG4	19	43699148	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2103186	43699148	15429835	135	58880										
SLC6A16	0	genome.wustl.edu	37	chr19	49796530	49796530	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atggtttcaaatacgacaacGacgatgatggggaagactat	11	6	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	49796530	49796530	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	silent	c.1728	p.V576	0.018	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	36	0	0	50	7	12.28	-	-	-	A	49796530	G	A	49796530	2	1	678	1	0	0	0	0	0	0	0	1	14768	1045	37	1		1	SLC6A16	19	49796530	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	6097382	49796530	9332453	136	58881										
SIGLEC6	0	genome.wustl.edu	37	chr19	52032988	52032988	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ccacactcacaatgcacaaaGagactcagagagatttgcag	8	11	2	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	52032988	52032988	G	T	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	silent	c.1002	p.L334	0.055	pfam_Ig_I-set,smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	73	0	0	63	30	31.91	-	-	-	T	52032988	G	T	52032988	2	4	678	1	0	0	0	0	0	0	0	1	14401	929	33	2		2	SIGLEC6	19	52032988	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2236458	52032988	7095995	137	58882										
LILRB5	0	genome.wustl.edu	37	chr19	54760586	54760586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gagggtcacgggcttcccccGagctatcacagaggctggct	14	13	2	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	54760586	54760586	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	missense	c.121	p.R41W	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	42	0	0	41	25	37.88	-	-	-	A	54760586	G	A	54760586	3	1	678	1	0	0	0	0	1	0	0	0	8849	1057	37	1	1698	1	LILRB5	19	54760586	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2727598	54760586	4368397	138	58883										
ZNF460	0	genome.wustl.edu	37	chr19	57802084	57802084	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	caggtgacagcacaaaacctGagaccgtagagcctatccct	9	13	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	19	57802084	57802084	G	A	SNP	ZNF460	ENST00000360338	human	ensembl	69_37n	1	known	missense	c.175	p.E59K	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714	15	0	0	23	12	34.29	-	-	-	A	57802084	G	A	57802084	3	1	678	1	0	0	0	0	1	0	0	0	18020	1291	45	2	185	2	ZNF460	19	57802084	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	3041498	57802084	1326899	139	58884										
JAG1	0	genome.wustl.edu	37	chr20	10639266	10639266	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	atcacaggtcacgcggatctGatactcaaagtgggcaacgc	11	11	4	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	10639266	10639266	G	A	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	nonsense	c.544	p.Q182*	1.000	pfam_DSL,smart_DSL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	81	0	0	65	65	49.62	-	-	-	A	10639266	G	A	10639266	4	1	678	1	0	0	0	0	0	1	0	0	7988	1299	45	2	3204	2	JAG1	20	10639266	Nonsense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		10639266	52386254	140	58885										
NINL	0	genome.wustl.edu	37	chr20	25436389	25436389	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctccgcctcttccacccgctCttctgtggctttcagctgtt	7	17	4	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	25436389	25436389	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.3877	p.E1293K	0.306	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	121	0	0	38	52	57.78	-	-	-	T	25436389	C	T	25436389	3	4	678	1	0	0	0	0	1	0	0	0	10492	922	32	2	279	2	NINL	20	25436389	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	14797123	25436389	37589131	141	58886										
NINL	0	genome.wustl.edu	37	chr20	25443172	25443172	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gataattgatccttgtagttCtgattctgggggaaaaagtt	11	4	2	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	25443172	25443172	C	T	SNP	NINL	ENST00000336104	human	ensembl	69_37n	-1	known	missense	c.286	p.E96K	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NINL	HGNC	ENSG00000101004	72	0	0	20	28	58.33	-	-	-	T	25443172	C	T	25443172	3	4	678	1	0	0	0	0	1	0	0	0	10492	912	32	2	739	2	NINL	20	25443172	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	6783	25443172	37582348	142	58887										
MYH7B	0	genome.wustl.edu	37	chr20	33586315	33586315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctcgcctctttgcctgcaggGgagctgagtcgcctgctaga	13	13	1	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	33586315	33586315	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	silent	c.4002	p.G1334	0.983	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	29	0	0	26	17	39.53	-	-	-	A	33586315	G	A	33586315	2	1	678	1	0	0	0	0	0	0	0	1	10112	1246	43	4		4	MYH7B	20	33586315	Silent	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	8143143	33586315	29439205	143	58888										
ZNF334	0	genome.wustl.edu	37	chr20	45131108	45131108	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcactgcattcatagggtctCtctccagtatgaattcttcg	7	11	5	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	45131108	45131108	C	G	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.870	p.E290D	0.166	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	47	0	0	45	28	38.36	-	-	-	G	45131108	C	G	45131108	3	3	678	1	0	0	0	0	1	0	0	0	17947	912	32	2	1176	2	ZNF334	20	45131108	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	11544793	45131108	17894412	144	58889										
SLC2A10	0	genome.wustl.edu	37	chr20	45354882	45354882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgggccccctctgcccgctCgggggcatgcactgctgcgc	14	18	1	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	45354882	45354882	C	T	SNP	SLC2A10	ENST00000359271	human	ensembl	69_37n	1	known	missense	c.1207	p.R403W	0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496	32	0	0	19	17	47.22	-	-	-	T	45354882	C	T	45354882	3	4	678	1	0	0	0	0	1	0	0	0	14628	875	31	1	1213	1	SLC2A10	20	45354882	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	223774	45354882	17670638	145	58890										
STAU1	0	genome.wustl.edu	37	chr20	47768247	47768247	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tcccacagaaagttccacttGataaagtaaaggtggaactg	9	8	0	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	47768247	47768247	G	C	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.382	p.Q128E	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	110	0	0	105	60	36.36	-	-	-	C	47768247	G	C	47768247	3	2	678	1	0	0	0	0	1	0	0	0	15363	1299	45	2	1409	2	STAU1	20	47768247	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	2413365	47768247	15257273	146	58891										
SLC9A8	0	genome.wustl.edu	37	chr20	48491270	48491270	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gccatccttttctcaggcatCgtgatgtcccactacacgca	7	15	1	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	48491270	48491270	C	G	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.1035	p.I345M	0.911	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	78	0	0	96	54	36	-	-	-	G	48491270	C	G	48491270	3	3	678	1	0	0	0	0	1	0	0	0	14809	874	31	3	1029	3	SLC9A8	20	48491270	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	723023	48491270	14534250	147	58892										
PARD6B	0	genome.wustl.edu	37	chr20	49366546	49366546	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gactattagctgttaatgatGaagttttagaagttaatggc	10	3	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	20	49366546	49366546	G	A	SNP	PARD6B	ENST00000371610	human	ensembl	69_37n	1	known	missense	c.640	p.E214K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171	75	0	0	44	10	18.52	-	-	-	A	49366546	G	A	49366546	3	1	678	1	0	0	0	0	1	0	0	0	11519	1291	45	2	650	2	PARD6B	20	49366546	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	875276	49366546	13658974	148	58893										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45994492	45994492	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgctgcaagcctgtcggctCtgtgcccatctgctctgggg	14	13	3	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	21	45994492	45994492	C	G	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	missense	c.857	p.S286C	0.000	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	74	0	0	95	41	30.15	-	-	-	G	45994492	C	G	45994492	3	3	678	1	0	0	0	0	1	0	0	0	8564	913	32	2	859	2	KRTAP10-4	21	45994492	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09		45994492	2135403	149	58894										
HMGXB4	0	genome.wustl.edu	37	chr22	35661391	35661391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	caaggagaagcataaagagaAgcgacactccaagtccaaga	10	9	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	22	35661391	35661391	A	G	SNP	HMGXB4	ENST00000216106	human	ensembl	69_37n	1	known	missense	c.1010	p.K337R	0.766	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	69	0	0	56	18	24.32	-	-	-	G	35661391	A	G	35661391	3	3	678	1	0	0	0	0	1	0	0	0	7290	72	3	5	1024	5	HMGXB4	22	35661391	Missense_Mutation	SNP	A	TCGA-D8-A1J9-01A-11D-A13L-09		35661391	15643175	150	58895										
SMC1B	0	genome.wustl.edu	37	chr22	45785753	45785753	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtatttcttatgaataggatGacacaggtcaaatagtcttc	8	6	3	2			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	22	45785753	45785753	G	T	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	missense	c.1570	p.H524N	1.000	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	53	0	0	42	32	43.24	-	-	-	T	45785753	G	T	45785753	3	4	678	1	0	0	0	0	1	0	0	0	14871	1290	45	2	2201	2	SMC1B	22	45785753	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	10124362	45785753	5518813	151	58896										
TUBGCP6	0	genome.wustl.edu	37	chr22	50665188	50665188	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	tagggctcgcagctggtcttCagcagggacagcagtacagg	15	10	2	0			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	22	50665188	50665188	C	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	silent	c.1575	p.L525	0.993	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	22	0	0	25	10	28.57	-	-	-	T	50665188	C	T	50665188	2	4	678	1	0	0	0	0	0	0	0	1	16867	813	29	2		2	TUBGCP6	22	50665188	Silent	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	4879435	50665188	639378	152	58897										
TSPYL2	0	genome.wustl.edu	37	chrX	53115366	53115366	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	gtgacaatgaaggcagcgatGatgacgacagagacattgag	14	6	0	6			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	X	53115366	53115366	G	A	SNP	TSPYL2	ENST00000375442	human	ensembl	69_37n	1	known	missense	c.1792	p.D598N	1.000	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	102	0	0	46	54	54	-	-	-	A	53115366	G	A	53115366	3	1	678	1	0	0	0	0	1	0	0	0	16756	1290	45	2	1814	2	TSPYL2	23	53115366	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09		53115366	102155194	153	58898										
HMGB3	0	genome.wustl.edu	37	chrX	150156319	150156319	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	ctgctaaagttgcccggaaaAaggtggaagaggaagatgaa	14	5	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	X	150156319	150156319	A	T	SNP	HMGB3	ENST00000325307	human	ensembl	69_37n	1	known	nonsense	c.535	p.K179*	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB3	HGNC	ENSG00000029993	77	0	0	113	16	12.4	-	-	-	T	150156319	A	T	150156319	4	4	678	1	0	0	0	0	0	1	0	0	7278	15	1	5	549	5	HMGB3	23	150156319	Nonsense_Mutation	SNP	A	TCGA-D8-A1J9-01A-11D-A13L-09	97040953	150156319	5114241	154	58899										
MAGEA3	0	genome.wustl.edu	37	chrX	151935227	151935227	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	aactcgtgctcagactcactCttccccctctctcaaaaccc	3	19	5	1			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	X	151935227	151935227	C	T	SNP	MAGEA3	ENST00000370278	human	ensembl	69_37n	-1	known	missense	c.940	p.E314K	0.038	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867	89	0	0	76	32	29.09	-	-	-	T	151935227	C	T	151935227	3	4	678	1	0	0	0	0	1	0	0	0	9236	922	32	2	8	2	MAGEA3	23	151935227	Missense_Mutation	SNP	C	TCGA-D8-A1J9-01A-11D-A13L-09	1778908	151935227	3335333	155	58900										
BCAP31	0	genome.wustl.edu	37	chrX	152986357	152986357	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.551282051282051	86	5.04587250655296e-35	4.2265845482186	4.47509807584532	4.04859512978325	0.193223714197672	0.765072034353535	66	cagcacaaggatgacaatgaGaaccacaaagaaggtgttgc	11	8	0	3			TCGA-D8-A1J9-01A-11D-A13L-09	TCGA-D8-A1J9-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6627e4b1-b34c-4aa2-836e-093061442a6d	6014c1c1-0619-4ea0-9f83-1e7a2523a083	X	152986357	152986357	G	A	SNP	BCAP31	ENST00000458587	human	ensembl	69_37n	-1	known	missense	c.364	p.L122F	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825	59	0	0	65	21	24.42	-	-	-	A	152986357	G	A	152986357	3	1	678	1	0	0	0	0	1	0	0	0	1351	942	33	2	601	2	BCAP31	23	152986357	Missense_Mutation	SNP	G	TCGA-D8-A1J9-01A-11D-A13L-09	1051130	152986357	2284203	156	58901										
CLSTN1	0	genome.wustl.edu	37	chr1	9790616	9790616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagctgctgctgccgggttgCgttctgggggtcgccctgct	16	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	9790616	9790616	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	69_37n	-1	known	missense	c.2896	p.A966T	0.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603	36	0	0	14	14	48.28	-	-	-	T	9790616	C	T	9790616	3	4	679	1	0	0	0	0	1	0	0	0	3591	768	27	1	53	1	CLSTN1	1	9790616	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		9790616	239460005	1	58902										
PRAMEF1	0	genome.wustl.edu	37	chr1	12856052	12856052	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgtgtacactgagggaagtCaggcagcccaagaggatctt	13	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	12856052	12856052	C	T	SNP	PRAMEF1	ENST00000332296	human	ensembl	69_37n	1	known	silent	c.1332	p.V444	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721	359	0	0	119	46	27.88	-	-	-	T	12856052	C	T	12856052	2	4	679	1	0	0	0	0	0	0	0	1	12502	813	29	2		2	PRAMEF1	1	12856052	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3065436	12856052	236394569	2	58903										
PRAMEF10	0	genome.wustl.edu	37	chr1	12955648	12955648	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggctctgccctgccagctCcagcagtctggatggggcct	13	15	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	12955648	12955648	C	G	SNP	PRAMEF10	ENST00000235347	human	ensembl	69_37n	-1	known	missense	c.31	p.E11Q	0.000	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	20	0	0	2	21	91.3	-	-	-	G	12955648	C	G	12955648	3	3	679	1	0	0	0	0	1	0	0	0	12503	864	30	2	1405	2	PRAMEF10	1	12955648	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	99596	12955648	236294973	3	58904										
CLCNKB	0	genome.wustl.edu	37	chr1	16370994	16370994	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctccaggggcctgatggagGagtttgtggggctgcgtgaa	18	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	16370994	16370994	G	C	SNP	CLCNKB	ENST00000375679	human	ensembl	69_37n	1	known	missense	c.7	p.E3Q	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908	40	0	0	11	15	57.69	-	-	-	C	16370994	G	C	16370994	3	2	679	1	0	0	0	0	1	0	0	0	3500	1175	41	2	9	2	CLCNKB	1	16370994	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3415346	16370994	232879627	4	58905										
HTR1D	0	genome.wustl.edu	37	chr1	23519904	23519904	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgtggttgaaaaagagagggGagccagccgagtgcgagtgc	18	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	23519904	23519904	G	C	SNP	HTR1D	ENST00000314113	human	ensembl	69_37n	-1	known	missense	c.809	p.S270C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	41	0	0	6	16	72.73	-	-	-	C	23519904	G	C	23519904	3	2	679	1	0	0	0	0	1	0	0	0	7492	1174	41	2	328	2	HTR1D	1	23519904	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7148910	23519904	225730717	5	58906										
NKAIN1	0	genome.wustl.edu	37	chr1	31656838	31656838	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagcggtgcagggatgtgttGaaggtcatgatgaagtcccg	17	6	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	31656838	31656838	G	A	SNP	NKAIN1	ENST00000526106	human	ensembl	69_37n	-1	novel	missense	c.128	p.S43L	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NKAIN1	HGNC	ENSG00000084628	63	0	0	14	25	64.1	-	-	-	A	31656838	G	A	31656838	3	1	679	1	0	0	0	0	1	0	0	0	10507	1281	45	2	342	2	NKAIN1	1	31656838	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8136934	31656838	217593783	6	58907										
IQCC	0	genome.wustl.edu	37	chr1	32673500	32673500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actaaaccacccaaaggccaGgcccccactgatagaagctc	7	16	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	32673500	32673500	G	A	SNP	IQCC	ENST00000537469	human	ensembl	69_37n	1	known	silent	c.1458	p.Q486	0.446	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCC	HGNC	ENSG00000160051	18	0	0	17	13	43.33	-	-	-	A	32673500	G	A	32673500	2	1	679	1	0	0	0	0	0	0	0	1	7858	991	35	4		4	IQCC	1	32673500	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1016662	32673500	216577121	7	58908										
EIF3I	0	genome.wustl.edu	37	chr1	32692099	32692099	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtgcatcatcgctggccatGagagtggagagctcaaccag	13	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	32692099	32692099	G	A	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	missense	c.496	p.E166K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	34	0	0	72	21	22.58	-	-	-	A	32692099	G	A	32692099	3	1	679	1	0	0	0	0	1	0	0	0	5056	1291	45	2	518	2	EIF3I	1	32692099	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	18599	32692099	216558522	8	58909										
LCK	0	genome.wustl.edu	37	chr1	32751206	32751206	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaggagctgtaccaactcatGaggctgtgctggaaggagcg	16	8	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	32751206	32751206	G	A	SNP	LCK	ENST00000333070	human	ensembl	69_37n	1	known	missense	c.1509	p.M503I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866	28	0	0	39	13	25	-	-	-	A	32751206	G	A	32751206	3	1	679	1	0	0	0	0	1	0	0	0	8730	1290	45	2	1465	2	LCK	1	32751206	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	59107	32751206	216499415	9	58910										
GJB4	0	genome.wustl.edu	37	chr1	35227506	35227506	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagaggtgcatggagatcttCggccccaggcaccggcggcc	15	13	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	35227506	35227506	C	T	SNP	GJB4	ENST00000339480	human	ensembl	69_37n	1	known	silent	c.651	p.F217	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433	39	0	0	16	8	33.33	-	-	-	T	35227506	C	T	35227506	2	4	679	1	0	0	0	0	0	0	0	1	6462	883	31	1		1	GJB4	1	35227506	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2476300	35227506	214023115	10	58911										
CSF3R	0	genome.wustl.edu	37	chr1	36932330	36932330	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggccacaggtctctgagctGttatgggactcccagggcac	13	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	36932330	36932330	G	C	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.2220	p.N740K	0.002	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	50	0	0	21	9	30	-	-	-	C	36932330	G	C	36932330	3	2	679	1	0	0	0	0	1	0	0	0	3969	1377	48	4	484	4	CSF3R	1	36932330	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1704824	36932330	212318291	11	58912										
KIAA0754	0	genome.wustl.edu	37	chr1	39877855	39877855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agggagactgcagtcaaactGaggggaatggtgaggagtgc	18	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	39877855	39877855	G	C	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	missense	c.1510	p.E504Q	0.990	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	90	0	0	88	39	30.71	-	-	-	C	39877855	G	C	39877855	3	2	679	1	0	0	0	0	1	0	0	0	8244	1291	45	2	1920	2	KIAA0754	1	39877855	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2945525	39877855	209372766	12	58913										
ERMAP	0	genome.wustl.edu	37	chr1	43296734	43296734	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caagggtcttaccgatgtctGatccaagttggaaatctgag	11	8	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	43296734	43296734	G	C	SNP	ERMAP	ENST00000372514	human	ensembl	69_37n	1	known	silent	c.381	p.L127	0.129	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010	63	0	0	57	15	20.55	-	-	-	C	43296734	G	C	43296734	2	2	679	1	0	0	0	0	0	0	0	1	5271	1277	45	2		2	ERMAP	1	43296734	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3418879	43296734	205953887	13	58914										
ST3GAL3	0	genome.wustl.edu	37	chr1	44290500	44290500	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgatgcctgcatcccaccctCtagagattttgaagtcactg	8	12	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	44290500	44290500	C	G	SNP	ST3GAL3	ENST00000262915	human	ensembl	69_37n	1	known	missense	c.352	p.L118V	0.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091	138	0	0	97	31	24.22	-	-	-	G	44290500	C	G	44290500	3	3	679	1	0	0	0	0	1	0	0	0	15307	912	32	2	366	2	ST3GAL3	1	44290500	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	993766	44290500	204960121	14	58915										
TMEM53	0	genome.wustl.edu	37	chr1	45140034	45140034	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagggctgatccgggatctcGatggtgtagtccagctctgc	14	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	45140034	45140034	G	C	SNP	TMEM53	ENST00000372237	human	ensembl	69_37n	-1	known	missense	c.30	p.I10M	1.000	NULL	pfam_DUF829_TMEM53	-	no_errors	TMEM53	HGNC	ENSG00000126106	17	0	0	31	10	24.39	-	-	-	C	45140034	G	C	45140034	3	2	679	1	0	0	0	0	1	0	0	0	16274	1048	37	3	815	3	TMEM53	1	45140034	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	849534	45140034	204110587	15	58916										
TESK2	0	genome.wustl.edu	37	chr1	45810610	45810610	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcttctacctccatctcctCagaagcacccgcagggcatg	7	16	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	45810610	45810610	C	G	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	missense	c.1618	p.E540Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	44	0	0	50	8	13.79	-	-	-	G	45810610	C	G	45810610	3	3	679	1	0	0	0	0	1	0	0	0	15863	835	29	2	101	2	TESK2	1	45810610	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	670576	45810610	203440011	16	58917										
MAST2	0	genome.wustl.edu	37	chr1	46494578	46494578	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttttttggagatactccgGaggagctctttgggcaggtg	14	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	46494578	46494578	G	C	SNP	MAST2	ENST00000361297	human	ensembl	69_37n	1	known	missense	c.2191	p.E731Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	170	0	0	148	72	32.73	-	-	-	C	46494578	G	C	46494578	3	2	679	1	0	0	0	0	1	0	0	0	9396	1175	41	2	2261	2	MAST2	1	46494578	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	683968	46494578	202756043	17	58918										
LRRC41	0	genome.wustl.edu	37	chr1	46751338	46751338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgacgggtgcgagcacccttCttccctgcagctcgcttgaa	11	14	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	46751338	46751338	C	G	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	85	0	0	34	8	19.05	-	-	-	G	46751338	C	G	46751338	3	3	679	1	0	0	0	0	1	0	0	0	9065	912	32	2	1275	2	LRRC41	1	46751338	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	256760	46751338	202499283	18	58919										
FAAH	0	genome.wustl.edu	37	chr1	46871175	46871175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatgttccacagtccatgttCaggttgggtcttggggtggg	15	7	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	46871175	46871175	C	G	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	missense	c.576	p.F192L	0.999	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	33	0	0	26	12	31.58	-	-	-	G	46871175	C	G	46871175	3	3	679	1	0	0	0	0	1	0	0	0	5393	825	29	2	590	2	FAAH	1	46871175	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	119837	46871175	202379446	19	58920										
CYP4A11	0	genome.wustl.edu	37	chr1	47395897	47395897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggatggggatcctggtggGatcaggcagcagctcaaagc	18	8	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	47395897	47395897	G	C	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.1453	p.P485A	0.982	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	134	0	0	52	33	38.82	-	-	-	C	47395897	G	C	47395897	3	2	679	1	0	0	0	0	1	0	0	0	4214	1174	41	2	113	2	CYP4A11	1	47395897	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	524722	47395897	201854724	20	58921										
CYP4A11	0	genome.wustl.edu	37	chr1	47398430	47398430	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattaccacacaggacgtctCaccttgatcctcctgagaag	7	13	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	47398430	47398430	C	G	SNP	CYP4A11	ENST00000371905	human	ensembl	69_37n	-1	known	nonstop	c.1367	p.*456S	0.981	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	157	0	0	97	50	34.01	-	-	-	G	47398430	C	G	47398430	4	3	679	1	0	0	0	0	0	0	0	0	4214	841	29	2		2	CYP4A11	1	47398430	Nonstop_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2533	47398430	201852191	21	58922										
TTC39A	0	genome.wustl.edu	37	chr1	51756244	51756244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctcaagtatcccatccgtGagtttcggctgcttcccaat	7	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	51756244	51756244	G	A	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	silent	c.1428	p.L476	0.999	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	61	0	0	96	31	24.41	-	-	-	A	51756244	G	A	51756244	2	1	679	1	0	0	0	0	0	0	0	1	16804	1277	45	2		2	TTC39A	1	51756244	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4357814	51756244	197494377	22	58923										
CC2D1B	0	genome.wustl.edu	37	chr1	52827250	52827250	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctccacatcccgcatacagtCtgccgccaacttctcgatgt	6	17	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	52827250	52827250	C	G	SNP	CC2D1B	ENST00000371586	human	ensembl	69_37n	-1	known	missense	c.253	p.D85H	0.956	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1B	HGNC	ENSG00000154222	12	0	0	11	8	42.11	-	-	-	G	52827250	C	G	52827250	3	3	679	1	0	0	0	0	1	0	0	0	2752	913	32	2	2407	2	CC2D1B	1	52827250	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1071006	52827250	196423371	23	58924										
C1orf177	0	genome.wustl.edu	37	chr1	55279532	55279532	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atttcaagagctttgtagaaGaacttaactcacatcacaat	5	8	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	55279532	55279532	G	C	SNP	C1orf177	ENST00000371273	human	ensembl	69_37n	1	known	missense	c.808	p.E270Q	0.288	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398	83	0	0	50	46	47.92	-	-	-	C	55279532	G	C	55279532	3	2	679	1	0	0	0	0	1	0	0	0	2036	943	33	2	834	2	C1orf177	1	55279532	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2452282	55279532	193971089	24	58925										
USP24	0	genome.wustl.edu	37	chr1	55537548	55537548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctccgacccattactgcttCctgattgctctttttcattc	4	14	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	55537548	55537548	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.7739	p.G2580E	1.000	NULL	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	224	0	0	61	38	38	-	-	-	T	55537548	C	T	55537548	3	4	679	1	0	0	0	0	1	0	0	0	17152	855	30	2	131	2	USP24	1	55537548	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	258016	55537548	193713073	25	58926										
USP24	0	genome.wustl.edu	37	chr1	55589232	55589232	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgaacacagattcccgcatgCagggctactggttctccttc	9	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	55589232	55589232	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	silent	c.4164	p.L1388	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	148	0	0	41	14	25.45	-	-	-	T	55589232	C	T	55589232	2	4	679	1	0	0	0	0	0	0	0	1	17152	697	25	4		4	USP24	1	55589232	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	51684	55589232	193661389	26	58927										
C1orf168	0	genome.wustl.edu	37	chr1	57209850	57209850	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcctggagtactcgacatCatcatatatctcctccgaga	6	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	57209850	57209850	C	G	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	missense	c.1477	p.D493H	1.000	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	160	0	0	77	42	35.29	-	-	-	G	57209850	C	G	57209850	3	3	679	1	0	0	0	0	1	0	0	0	2031	826	29	2	753	2	C1orf168	1	57209850	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1620618	57209850	192040771	27	58928										
NFIA	0	genome.wustl.edu	37	chr1	61818161	61818161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggcccaaatttttctctctCagatttggaaagttcttcat	6	9	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	61818161	61818161	C	T	SNP	NFIA	ENST00000371189	human	ensembl	69_37n	1	known	missense	c.875	p.S292L	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599	75	0	0	54	36	40	-	-	-	T	61818161	C	T	61818161	3	4	679	1	0	0	0	0	1	0	0	0	10442	838	29	2	904	2	NFIA	1	61818161	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4608311	61818161	187432460	28	58929										
ROR1	0	genome.wustl.edu	37	chr1	64643812	64643812	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctccagccatattatggattCagtaaccaggaagtgattga	9	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	64643812	64643812	C	T	SNP	ROR1	ENST00000371079	human	ensembl	69_37n	1	known	silent	c.2088	p.F696	0.525	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR1	HGNC	ENSG00000185483	29	0	0	19	8	29.63	-	-	-	T	64643812	C	T	64643812	2	4	679	1	0	0	0	0	0	0	0	1	13612	825	29	2		2	ROR1	1	64643812	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2825651	64643812	184606809	29	58930										
WLS	0	genome.wustl.edu	37	chr1	68615925	68615925	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gacagaagcatcgcatagaaGatgccctgtcggatgtcacc	11	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	68615925	68615925	G	A	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	silent	c.918	p.I306	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	23	0	0	39	15	27.78	-	-	-	A	68615925	G	A	68615925	2	1	679	1	0	0	0	0	0	0	0	1	17473	932	33	2		2	WLS	1	68615925	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3972113	68615925	180634696	30	58931										
LRRC7	0	genome.wustl.edu	37	chr1	70460285	70460285	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctaaaagtagatgacaatCaacttacaatgctacccaat	4	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	70460285	70460285	C	G	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.859	p.Q287E	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	67	0	0	59	37	38.54	-	-	-	G	70460285	C	G	70460285	3	3	679	1	0	0	0	0	1	0	0	0	9086	827	29	2	893	2	LRRC7	1	70460285	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1844360	70460285	178790336	31	58932										
CYR61	0	genome.wustl.edu	37	chr1	86048233	86048233	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagttaccaatgacaaccctGagtgccgccttgtgaaagaa	10	10	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	86048233	86048233	G	C	SNP	CYR61	ENST00000451137	human	ensembl	69_37n	1	known	missense	c.769	p.E257Q	0.973	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871	43	0	0	36	23	38.98	-	-	-	C	86048233	G	C	86048233	3	2	679	1	0	0	0	0	1	0	0	0	4230	1291	45	2	783	2	CYR61	1	86048233	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	15587948	86048233	163202388	32	58933										
ABCA4	0	genome.wustl.edu	37	chr1	94476927	94476927	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcttcctcagcacggcgttGaacctgagcagcgtctgaaa	11	12	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	94476927	94476927	G	C	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.5475	p.F1825L	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	21	0	0	23	14	37.84	-	-	-	C	94476927	G	C	94476927	3	2	679	1	0	0	0	0	1	0	0	0	34	1281	45	2	1394	2	ABCA4	1	94476927	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8428694	94476927	154773694	33	58934										
ARHGAP29	0	genome.wustl.edu	37	chr1	94639529	94639529	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcaggcaagccaagctcctCagagtcttctttaggttgac	9	11	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	94639529	94639529	C	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.3682	p.E1228Q	0.751	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	55	0	0	37	22	37.29	-	-	-	G	94639529	C	G	94639529	3	3	679	1	0	0	0	0	1	0	0	0	880	835	29	2	107	2	ARHGAP29	1	94639529	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	162602	94639529	154611092	34	58935										
COL11A1	0	genome.wustl.edu	37	chr1	103343701	103343701	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtattgatttcaatgacagtCttttcatagccttttctgga	7	7	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	103343701	103343701	C	G	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.5331	p.K1777N	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	54	0	0	53	16	23.19	-	-	-	G	103343701	C	G	103343701	3	3	679	1	0	0	0	0	1	0	0	0	3697	912	32	2	129	2	COL11A1	1	103343701	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8704172	103343701	145906920	35	58936										
PRPF38B	0	genome.wustl.edu	37	chr1	109235463	109235463	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgagctcaagacctaccacGaggtggtggacgagatctac	12	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	109235463	109235463	G	T	SNP	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	nonsense	c.250	p.E84*	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	10	0	0	10	8	44.44	-	-	-	T	109235463	G	T	109235463	4	4	679	1	0	0	0	0	0	1	0	0	12649	1059	37	3	252	3	PRPF38B	1	109235463	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5891762	109235463	140015158	36	58937										
FNDC7	0	genome.wustl.edu	37	chr1	109284421	109284421	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atagagggaagagaaatgaaGaatgacaaagtgagccccag	13	5	0	6			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	109284421	109284421	G	C	SNP	FNDC7	ENST00000271311	human	ensembl	69_37n	1	known	missense	c.2200	p.E734Q	0.919	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107	51	0	0	46	33	41.77	-	-	-	C	109284421	G	C	109284421	3	2	679	1	0	0	0	0	1	0	0	0	6019	943	33	2	2243	2	FNDC7	1	109284421	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	48958	109284421	139966200	37	58938										
TMEM167B	0	genome.wustl.edu	37	chr1	109635596	109635596	+	Frame_Shift_Del	DEL	C	C	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaagtacctcgtctcaaaaCctggctgctatcagagaaga							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	109635596	109635596	C	-	DEL	TMEM167B	ENST00000338272	human	ensembl	69_37n	1	known	frame_shift_del	c.95	p.W33fs	1.000	pfam_DUF1242	pfam_DUF1242	-	no_errors	TMEM167B	HGNC	ENSG00000215717	158	0	0	174	90	33.71	-	-	-	-	109635596	C	-	109635596	7	5	679	1	0	1	0	1	0	0	0	0	16177	507	18	0	101	0	TMEM167B	1	109635596	Frame_Shift_Del	DEL	C	TCGA-D8-A1JA-01A-11D-A13L-09	351175	109635596	139615025	38	58939										
CELSR2	0	genome.wustl.edu	37	chr1	109795443	109795443	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagtcactgtgttggatgtGaatgacaatccccctgtctt	9	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	109795443	109795443	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.2742	p.V914	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	16	0	0	25	16	39.02	-	-	-	C	109795443	G	C	109795443	2	2	679	1	0	0	0	0	0	0	0	1	3251	1277	45	2		2	CELSR2	1	109795443	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	159847	109795443	139455178	39	58940										
CELSR2	0	genome.wustl.edu	37	chr1	109806318	109806318	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctcccaaccctggtacctCagcctcatgttccgcacgcg	7	18	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	109806318	109806318	C	G	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	silent	c.4920	p.L1640	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	32	0	0	10	13	56.52	-	-	-	G	109806318	C	G	109806318	2	3	679	1	0	0	0	0	0	0	0	1	3251	813	29	2		2	CELSR2	1	109806318	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	10875	109806318	139444303	40	58941										
RBM15	0	genome.wustl.edu	37	chr1	110884273	110884273	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctgaaaaaagaagaccgctCtgatgggagtgcacctagca	11	9	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	110884273	110884273	C	G	SNP	RBM15	ENST00000369784	human	ensembl	69_37n	1	known	missense	c.2246	p.S749C	0.995	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	24	0	0	29	10	25.64	-	-	-	G	110884273	C	G	110884273	3	3	679	1	0	0	0	0	1	0	0	0	13199	913	32	2	2248	2	RBM15	1	110884273	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1077955	110884273	138366348	41	58942										
DDX20	0	genome.wustl.edu	37	chr1	112303409	112303409	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaatttttggctaatgctttGacaaagtacatgagagatcc	9	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	112303409	112303409	G	C	SNP	DDX20	ENST00000369702	human	ensembl	69_37n	1	known	missense	c.762	p.L254F	1.000	smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703	79	0	0	110	69	38.55	-	-	-	C	112303409	G	C	112303409	3	2	679	1	0	0	0	0	1	0	0	0	4379	1281	45	2	780	2	DDX20	1	112303409	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1419136	112303409	136947212	42	58943										
LRIG2	0	genome.wustl.edu	37	chr1	113650363	113650363	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcatcctgaatgtggatctGaaagattttgtctgtggttt	11	5	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	113650363	113650363	G	C	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	silent	c.1461	p.L487	0.996	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	39	0	0	42	31	42.47	-	-	-	C	113650363	G	C	113650363	2	2	679	1	0	0	0	0	0	0	0	1	9011	1277	45	2		2	LRIG2	1	113650363	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1346954	113650363	135600258	43	58944										
TRIM33	0	genome.wustl.edu	37	chr1	114944049	114944049	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggaattcaatacttaattCatggcaatagaggtaaagca	8	6	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	114944049	114944049	C	A	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	nonsense	c.2929	p.E977*	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	49	0	0	46	25	35.21	-	-	-	A	114944049	C	A	114944049	4	1	679	1	0	0	0	0	0	1	0	0	16603	835	29	2	470	2	TRIM33	1	114944049	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1293686	114944049	134306572	44	58945										
PDE4DIP	0	genome.wustl.edu	37	chr1	144917926	144917926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgatactgtaggagctcccGaaattcctgagaccaaaaat	8	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	144917926	144917926	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.1360	p.R454W	0.167	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	150	0	0	220	30	12	-	-	-	A	144917926	G	A	144917926	3	1	679	1	0	0	0	0	1	0	0	0	11716	1057	37	1	5826	1	PDE4DIP	1	144917926	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	29973877	144917926	104332695	45	58946										
RBM8A	0	genome.wustl.edu	37	chr1	145508024	145508024	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggggttccagagagcattCacaaactgaaagaaaaagcg	11	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	145508024	145508024	C	T	SNP	RBM8A	ENST00000330165	human	ensembl	69_37n	1	known	missense	c.76	p.H26Y	1.000	NULL	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom,prints_RNA-bd_8	-	no_errors	RBM8A	HGNC	ENSG00000131795	56	0	0	41	37	47.44	-	-	-	T	145508024	C	T	145508024	3	4	679	1	0	0	0	0	1	0	0	0	13229	826	29	2	82	2	RBM8A	1	145508024	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	590098	145508024	103742597	46	58947										
OTUD7B	0	genome.wustl.edu	37	chr1	149916418	149916418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcgctggatcatttcctcctGatactggtgacggtgaccca	11	12	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	149916418	149916418	G	C	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.1870	p.Q624E	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	55	0	0	40	26	39.39	-	-	-	C	149916418	G	C	149916418	3	2	679	1	0	0	0	0	1	0	0	0	11392	1299	45	2	665	2	OTUD7B	1	149916418	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4408394	149916418	99334203	47	58948										
HORMAD1	0	genome.wustl.edu	37	chr1	150679148	150679148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attttccattcgttctctctCagtggtcacttttactttga	5	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	150679148	150679148	C	G	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	missense	c.685	p.E229Q	1.000	superfamily_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	225	0	0	366	155	29.75	-	-	-	G	150679148	C	G	150679148	3	3	679	1	0	0	0	0	1	0	0	0	7337	835	29	2	523	2	HORMAD1	1	150679148	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	762730	150679148	98571473	48	58949										
FAM63A	0	genome.wustl.edu	37	chr1	150970156	150970156	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgcgctgcctgctgctgttGatactcctcttgctgaagct	10	13	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	150970156	150970156	G	C	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.1417	p.Q473E	1.000	NULL	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	30	0	0	22	6	21.43	-	-	-	C	150970156	G	C	150970156	3	2	679	1	0	0	0	0	1	0	0	0	5641	1299	45	2	144	2	FAM63A	1	150970156	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	291008	150970156	98280465	49	58950										
LYSMD1	0	genome.wustl.edu	37	chr1	151133480	151133480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggagctcaggtggagacctgCatcctccccaggtaccctgc	12	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	151133480	151133480	C	T	SNP	LYSMD1	ENST00000368908	human	ensembl	69_37n	-1	known	missense	c.562	p.A188T	0.009	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD1	HGNC	ENSG00000163155	90	0	0	36	11	23.4	-	-	-	T	151133480	C	T	151133480	3	4	679	1	0	0	0	0	1	0	0	0	9191	710	25	4	125	4	LYSMD1	1	151133480	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	163324	151133480	98117141	50	58951										
PSMD4	0	genome.wustl.edu	37	chr1	151239035	151239035	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcagacattgatgccagctCagctatggacacatctgagc	10	11	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	151239035	151239035	C	G	SNP	PSMD4	ENST00000368884	human	ensembl	69_37n	1	known	nonsense	c.935	p.S312*	1.000	NULL	pfam_Ubiquitin-int_motif,pfam_Ssl1-like,smart_VWF_A,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_VWF_A	-	no_errors	PSMD4	HGNC	ENSG00000159352	142	0	0	59	13	18.06	-	-	-	G	151239035	C	G	151239035	4	3	679	1	0	0	0	0	0	1	0	0	12780	838	29	2	969	2	PSMD4	1	151239035	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	105555	151239035	98011586	51	58952										
POGZ	0	genome.wustl.edu	37	chr1	151378286	151378286	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcaggtggtgccgcagcatGaaacgcacagcccactcata	11	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	151378286	151378286	G	C	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.3225	p.F1075L	1.000	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	85	0	0	47	14	22.95	-	-	-	C	151378286	G	C	151378286	3	2	679	1	0	0	0	0	1	0	0	0	12260	1281	45	2	1011	2	POGZ	1	151378286	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	139251	151378286	97872335	52	58953										
THEM5	0	genome.wustl.edu	37	chr1	151823550	151823550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgggggcccctccaggtagGagcctggttggaaaagacag	16	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	151823550	151823550	G	C	SNP	THEM5	ENST00000368817	human	ensembl	69_37n	-1	known	missense	c.443	p.S148C	1.000	NULL	pfam_Thioestr_supf	-	no_errors	THEM5	HGNC	ENSG00000196407	28	0	0	51	16	23.88	-	-	-	C	151823550	G	C	151823550	3	2	679	1	0	0	0	0	1	0	0	0	15954	1174	41	2	316	2	THEM5	1	151823550	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	445264	151823550	97427071	53	58954										
TCHHL1	0	genome.wustl.edu	37	chr1	152060521	152060521	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgccctggatgagttgtttCagctctctgccagtcagtgt	11	11	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	152060521	152060521	C	T	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	silent	c.99	p.L33	0.104	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	92	0	0	75	26	25.74	-	-	-	T	152060521	C	T	152060521	2	4	679	1	0	0	0	0	0	0	0	1	15796	813	29	2		2	TCHHL1	1	152060521	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	236971	152060521	97190100	54	58955										
TCHH	0	genome.wustl.edu	37	chr1	152082620	152082620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcttcttcctgctgcagctCgtcttttttgcggtactgcc	8	14	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	152082620	152082620	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3073	p.E1025K	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	429	0	0	347	136	28.1	-	-	-	T	152082620	C	T	152082620	3	4	679	1	0	0	0	0	1	0	0	0	15795	893	31	1	2762	1	TCHH	1	152082620	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	22099	152082620	97168001	55	58956										
S100A7L2	0	genome.wustl.edu	37	chr1	153410674	153410674	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccccactcacacagccactGaggaagttggggaagttctc	10	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	153410674	153410674	G	C	SNP	S100A7L2	ENST00000453814	human	ensembl	69_37n	-1	known	silent	c.165	p.L55	0.499	NULL	pfscan_EF_HAND_2	-	no_errors	S100A7L2	HGNC	ENSG00000197364	67	0	0	133	63	32.14	-	-	-	C	153410674	G	C	153410674	2	2	679	1	0	0	0	0	0	0	0	1	13871	1277	45	2		2	S100A7L2	1	153410674	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1328054	153410674	95839947	56	58957										
NPR1	0	genome.wustl.edu	37	chr1	153660668	153660668	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagaggccaccattccagcaGatccgcctgacgttgcgcaa	11	14	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	153660668	153660668	G	C	SNP	NPR1	ENST00000368680	human	ensembl	69_37n	1	known	missense	c.2388	p.Q796H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	72	0	0	39	17	30.36	-	-	-	C	153660668	G	C	153660668	3	2	679	1	0	0	0	0	1	0	0	0	10667	933	33	2	2446	2	NPR1	1	153660668	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	249994	153660668	95589953	57	58958										
DENND4B	0	genome.wustl.edu	37	chr1	153906685	153906685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taccactcttcaccaggcgtCcagggggtgaggctgggtct	14	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	153906685	153906685	C	T	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.2867	p.G956E	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	34	0	0	16	10	37.04	-	-	-	T	153906685	C	T	153906685	3	4	679	1	0	0	0	0	1	0	0	0	4470	855	30	2	1663	2	DENND4B	1	153906685	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	246017	153906685	95343936	58	58959										
SHE	0	genome.wustl.edu	37	chr1	154456804	154456804	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatgatgtggacacatccttGactagtcctggaatgaaaat	9	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	154456804	154456804	G	C	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	missense	c.1309	p.Q437E	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	70	0	0	84	29	25.66	-	-	-	C	154456804	G	C	154456804	3	2	679	1	0	0	0	0	1	0	0	0	14365	1299	45	2	182	2	SHE	1	154456804	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	550119	154456804	94793817	59	58960										
FLAD1	0	genome.wustl.edu	37	chr1	154956531	154956531	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcatcatcattgttggagatGagatccttaaggtgtgtctg	12	6	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	154956531	154956531	G	C	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	missense	c.361	p.E121Q	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	32	0	0	14	7	33.33	-	-	-	C	154956531	G	C	154956531	3	2	679	1	0	0	0	0	1	0	0	0	5966	1291	45	2	363	2	FLAD1	1	154956531	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	499727	154956531	94294090	60	58961										
ASH1L	0	genome.wustl.edu	37	chr1	155317560	155317560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttttcagagactgaggtctCactgctgtctgcctcacttg	9	12	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	155317560	155317560	C	G	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.7705	p.E2569Q	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	211	0	0	191	70	26.72	-	-	-	G	155317560	C	G	155317560	3	3	679	1	0	0	0	0	1	0	0	0	1045	835	29	2	1240	2	ASH1L	1	155317560	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	361029	155317560	93933061	61	58962										
GON4L	0	genome.wustl.edu	37	chr1	155720476	155720476	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcatcctcagagctggcttCacaggcagtgtggaagagct	12	11	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	155720476	155720476	C	T	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.6625	p.E2209K	0.995	superfamily_Homeodomain-like	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	132	0	0	134	61	31.12	-	-	-	T	155720476	C	T	155720476	3	4	679	1	0	0	0	0	1	0	0	0	6621	835	29	2	104	2	GON4L	1	155720476	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	402916	155720476	93530145	62	58963										
NES	0	genome.wustl.edu	37	chr1	156645031	156645031	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacgtggccacctccaggctGagggacatcttgaggtgcgc	14	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	156645031	156645031	G	A	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	silent	c.885	p.L295	0.980	pfam_F	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	25	0	0	22	9	29.03	-	-	-	A	156645031	G	A	156645031	2	1	679	1	0	0	0	0	0	0	0	1	10409	1277	45	2		2	NES	1	156645031	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	924555	156645031	92605590	63	58964										
ISG20L2	0	genome.wustl.edu	37	chr1	156697019	156697019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctttttagaggatttcttCtgggagctcttcttctgaga	9	7	6	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	156697019	156697019	C	G	SNP	ISG20L2	ENST00000313146	human	ensembl	69_37n	-1	known	missense	c.426	p.Q142H	0.853	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319	60	0	0	107	40	27.03	-	-	-	G	156697019	C	G	156697019	3	3	679	1	0	0	0	0	1	0	0	0	7909	912	32	2	647	2	ISG20L2	1	156697019	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	51988	156697019	92553602	64	58965										
ARHGEF11	0	genome.wustl.edu	37	chr1	156933335	156933335	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttgttgaaataacccgggtCatagtcttcctctgggccaa	10	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	156933335	156933335	C	G	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.1015	p.D339H	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	107	0	0	86	54	38.57	-	-	-	G	156933335	C	G	156933335	3	3	679	1	0	0	0	0	1	0	0	0	898	826	29	2	3793	2	ARHGEF11	1	156933335	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	236316	156933335	92317286	65	58966										
PYHIN1	0	genome.wustl.edu	37	chr1	158906839	158906839	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagaagagtatgacaaaattCagattgctgacttgatggag	11	4	1	6			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	158906839	158906839	C	T	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	nonsense	c.139	p.Q47*	0.006	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	63	0	0	88	37	29.6	-	-	-	T	158906839	C	T	158906839	4	4	679	1	0	0	0	0	0	1	0	0	12948	827	29	2	141	2	PYHIN1	1	158906839	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1973504	158906839	90343782	66	58967										
VANGL2	0	genome.wustl.edu	37	chr1	160385686	160385686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcgggccactcccgcagctCccgcaagcacaggtgggcag	14	16	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	160385686	160385686	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.59	p.S20F	1.000	pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	43	0	0	27	9	25	-	-	-	T	160385686	C	T	160385686	3	4	679	1	0	0	0	0	1	0	0	0	17217	855	30	2	61	2	VANGL2	1	160385686	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1478847	160385686	88864935	67	58968										
OLFML2B	0	genome.wustl.edu	37	chr1	161967971	161967971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgagggctgtggcagtgctGaggaccagggtgcggtccga	19	9	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	161967971	161967971	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.1118	p.S373L	0.006	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	88	0	0	72	30	29.41	-	-	-	A	161967971	G	A	161967971	3	1	679	1	0	0	0	0	1	0	0	0	10931	1294	45	2	1146	2	OLFML2B	1	161967971	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1582285	161967971	87282650	68	58969										
RXRG	0	genome.wustl.edu	37	chr1	165386311	165386311	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcccatgacaaggcacttctGatagcgacagtactggcagc	11	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	165386311	165386311	G	A	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	nonsense	c.589	p.Q197*	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	53	0	0	104	39	27.27	-	-	-	A	165386311	G	A	165386311	4	1	679	1	0	0	0	0	0	1	0	0	13851	1299	45	2	830	2	RXRG	1	165386311	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3418340	165386311	83864310	69	58970										
DCAF6	0	genome.wustl.edu	37	chr1	167973911	167973911	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catcctctacaatgtcagctCaggctcattcgacatcatct	5	14	6	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	167973911	167973911	C	G	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.1258	p.Q420E	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	129	0	0	108	38	26.03	-	-	-	G	167973911	C	G	167973911	3	3	679	1	0	0	0	0	1	0	0	0	4306	827	29	2	1296	2	DCAF6	1	167973911	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2587600	167973911	81276710	70	58971										
SCYL3	0	genome.wustl.edu	37	chr1	169831772	169831772	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acctgtggcaagatgactttCttcagctgctcctgagtgaa	10	10	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	169831772	169831772	C	G	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	missense	c.1122	p.K374N	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	22	0	0	24	7	22.58	-	-	-	G	169831772	C	G	169831772	3	3	679	1	0	0	0	0	1	0	0	0	14037	912	32	2	1126	2	SCYL3	1	169831772	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1857861	169831772	79418849	71	58972										
CENPL	0	genome.wustl.edu	37	chr1	173780430	173780430	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgactctggtgcactgtaaGaatccatggtctgtctgcat	10	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	173780430	173780430	G	A	SNP	CENPL	ENST00000356198	human	ensembl	69_37n	-1	known	missense	c.8	p.S3F	0.052	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334	108	0	0	88	25	22.12	-	-	-	A	173780430	G	A	173780430	3	1	679	1	0	0	0	0	1	0	0	0	3265	942	33	2	1184	2	CENPL	1	173780430	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3948658	173780430	75470191	72	58973										
ASTN1	0	genome.wustl.edu	37	chr1	176863769	176863769	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacctccagcagaaccggctCagcaggggtgtcagggctgg	15	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	176863769	176863769	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.2893	p.E965K	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	79	0	0	44	15	25.42	-	-	-	T	176863769	C	T	176863769	3	4	679	1	0	0	0	0	1	0	0	0	1068	835	29	2	1047	2	ASTN1	1	176863769	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3083339	176863769	72386852	73	58974										
CEP350	0	genome.wustl.edu	37	chr1	179989446	179989446	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaaagtgaagccaagaaatTagctggggccagcattaact	11	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	179989446	179989446	T	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	nonsense	c.2537	p.L846*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	36	0	0	41	19	31.67	-	-	-	G	179989446	T	G	179989446	4	3	679	1	0	0	0	0	0	1	0	0	3283	1764	61	5	2579	5	CEP350	1	179989446	Nonsense_Mutation	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	3125677	179989446	69261175	74	58975										
CEP350	0	genome.wustl.edu	37	chr1	180062885	180062885	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgatggtattgcatattttGagtgcaaagaaaagcatggt	11	3	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	180062885	180062885	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.7645	p.E2549Q	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	49	0	0	66	27	29.03	-	-	-	C	180062885	G	C	180062885	3	2	679	1	0	0	0	0	1	0	0	0	3283	1291	45	2	7775	2	CEP350	1	180062885	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	73439	180062885	69187736	75	58976										
KIAA1614	0	genome.wustl.edu	37	chr1	180904891	180904891	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actctgccctggacagcacaGacaactctgacaactgcagg	9	14	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	180904891	180904891	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.1846	p.D616N	0.206	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	14	0	0	13	4	23.53	-	-	-	A	180904891	G	A	180904891	3	1	679	1	0	0	0	0	1	0	0	0	8300	942	33	2	1864	2	KIAA1614	1	180904891	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	842006	180904891	68345730	76	58977										
KIAA1614	0	genome.wustl.edu	37	chr1	180910280	180910280	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atagcctccaccctggggctGaaaaagctcttctcagccct	8	15	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	180910280	180910280	G	C	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	silent	c.3018	p.L1006	0.986	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	21	0	0	13	6	31.58	-	-	-	C	180910280	G	C	180910280	2	2	679	1	0	0	0	0	0	0	0	1	8300	1277	45	2		2	KIAA1614	1	180910280	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5389	180910280	68340341	77	58978										
MR1	0	genome.wustl.edu	37	chr1	181003208	181003208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatggtgaagcacagcgattCccgtgagtatcccacgtcct	10	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	181003208	181003208	C	T	SNP	MR1	ENST00000367580	human	ensembl	69_37n	1	known	missense	c.65	p.S22F	0.267	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	MR1	HGNC	ENSG00000153029	43	0	0	74	28	27.45	-	-	-	T	181003208	C	T	181003208	3	4	679	1	0	0	0	0	1	0	0	0	9824	855	30	2	67	2	MR1	1	181003208	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	92928	181003208	68247413	78	58979										
TPR	0	genome.wustl.edu	37	chr1	186295307	186295307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcattactatcttcaccctCatctcccatccctgtgtcat	2	16	6	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	186295307	186295307	C	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.5950	p.E1984K	0.970	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	66	0	0	200	78	28.06	-	-	-	T	186295307	C	T	186295307	3	4	679	1	0	0	0	0	1	0	0	0	16512	835	29	2	1185	2	TPR	1	186295307	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5292099	186295307	62955314	79	58980										
UCHL5	0	genome.wustl.edu	37	chr1	192992148	192992148	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acttaacatactattaccttGatctgtatccatgggttcct	5	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	192992148	192992148	G	C	SNP	UCHL5	ENST00000443327	human	ensembl	69_37n	-1	known	nonsense	c.320	p.S107*	1.000	NULL	pfam_Peptidase_C12	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UCHL5	HGNC	ENSG00000116750	81	0	0	176	48	21.33	-	-	-	C	192992148	G	C	192992148	4	2	679	1	0	0	0	0	0	1	0	0	17019	1299	45	2	247	2	UCHL5	1	192992148	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6696841	192992148	56258473	80	58981										
GLRX2	0	genome.wustl.edu	37	chr1	193074729	193074729	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccacgtgtaaacatcctttaGaggggagaagcggctcactt	11	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	193074729	193074729	G	C	SNP	GLRX2	ENST00000367440	human	ensembl	69_37n	-1	known	missense	c.40	p.L14V	0.001	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572	20	0	0	37	10	20.83	-	-	-	C	193074729	G	C	193074729	3	2	679	1	0	0	0	0	1	0	0	0	6512	933	33	2	596	2	GLRX2	1	193074729	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	82581	193074729	56175892	81	58982										
ASPM	0	genome.wustl.edu	37	chr1	197069573	197069573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaaatacctgaatttttatGgtgctatttttaatttcctg	6	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	197069573	197069573	G	A	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.8808	p.T2936	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	17	0	0	29	13	30.95	-	-	-	A	197069573	G	A	197069573	2	1	679	1	0	0	0	0	0	0	0	1	1060	1335	47	4		4	ASPM	1	197069573	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3994844	197069573	52181048	82	58983										
ASPM	0	genome.wustl.edu	37	chr1	197070908	197070908	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atatatgttctgtacatcctGaaagtagcctgaatgagaac	8	7	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	197070908	197070908	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.7473	p.F2491L	0.993	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	22	0	0	80	27	25	-	-	-	C	197070908	G	C	197070908	3	2	679	1	0	0	0	0	1	0	0	0	1060	1281	45	2	3004	2	ASPM	1	197070908	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1335	197070908	52179713	83	58984										
PTPRC	0	genome.wustl.edu	37	chr1	198721855	198721855	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttccccagaagaattcctctGaagggaacaagcatcacaag	8	11	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	198721855	198721855	G	T	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	nonsense	c.3463	p.E1155*	0.927	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	43	0	0	68	24	26.09	-	-	-	T	198721855	G	T	198721855	4	4	679	1	0	0	0	0	0	1	0	0	12880	1291	45	2	3586	2	PTPRC	1	198721855	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1650947	198721855	50528766	84	58985										
NAV1	0	genome.wustl.edu	37	chr1	201752734	201752734	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acccatcctcaatattaactCagccagcttctcccagggcc	5	17	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	201752734	201752734	C	G	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	nonsense	c.2558	p.S853*	0.999	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	103	0	0	49	15	23.44	-	-	-	G	201752734	C	G	201752734	4	3	679	1	0	0	0	0	0	1	0	0	10255	838	29	2	2641	2	NAV1	1	201752734	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3030879	201752734	47497887	85	58986										
KLHL12	0	genome.wustl.edu	37	chr1	202894213	202894213	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagagggtattgctcttcctGagggagttcattgaattgag	13	6	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	202894213	202894213	G	C	SNP	KLHL12	ENST00000435533	human	ensembl	69_37n	-1	known	silent	c.192	p.L64	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153	59	0	0	89	40	31.01	-	-	-	C	202894213	G	C	202894213	2	2	679	1	0	0	0	0	0	0	0	1	8421	1277	45	2		2	KLHL12	1	202894213	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1141479	202894213	46356408	86	58987										
IRF6	0	genome.wustl.edu	37	chr1	209964001	209964001	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgacctccaggatcagtcctCtgtccatgacgtccagcagc	9	15	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	209964001	209964001	C	G	SNP	IRF6	ENST00000367021	human	ensembl	69_37n	-1	known	missense	c.899	p.R300T	1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595	58	0	0	37	13	26	-	-	-	G	209964001	C	G	209964001	3	3	679	1	0	0	0	0	1	0	0	0	7888	913	32	2	516	2	IRF6	1	209964001	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7069788	209964001	39286620	87	58988										
RPS6KC1	0	genome.wustl.edu	37	chr1	213303185	213303185	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agacgactatgaagctgcttCtgatttttataggaagggag	12	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	213303185	213303185	C	G	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	1	known	missense	c.788	p.S263C	0.969	pfam_MIT,smart_MIT	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	59	0	0	44	22	33.33	-	-	-	G	213303185	C	G	213303185	3	3	679	1	0	0	0	0	1	0	0	0	13744	913	32	2	810	2	RPS6KC1	1	213303185	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3339184	213303185	35947436	88	58989										
CENPF	0	genome.wustl.edu	37	chr1	214815502	214815502	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcggaagaaaagtatatttCagggcctcatgagttgtcaa	11	6	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	214815502	214815502	C	T	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.3821	p.S1274L	0.083	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	20	0	0	28	14	32.56	-	-	-	T	214815502	C	T	214815502	3	4	679	1	0	0	0	0	1	0	0	0	3260	838	29	2	3863	2	CENPF	1	214815502	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1512317	214815502	34435119	89	58990										
KCNK2	0	genome.wustl.edu	37	chr1	215408414	215408414	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcctcccttactgaagactGagagtatctatctgaatggt	9	9	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	215408414	215408414	G	A	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.1207	p.E403K	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	114	0	0	89	37	29.37	-	-	-	A	215408414	G	A	215408414	3	1	679	1	0	0	0	0	1	0	0	0	8120	1291	45	2	1276	2	KCNK2	1	215408414	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	592912	215408414	33842207	90	58991										
USH2A	0	genome.wustl.edu	37	chr1	216595627	216595627	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ataggcaaagatcaacatttCaatgacctgaaacaagaagc	7	8	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	216595627	216595627	C	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.52	p.E18Q	0.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	26	0	0	43	14	24.56	-	-	-	G	216595627	C	G	216595627	3	3	679	1	0	0	0	0	1	0	0	0	17133	835	29	2	15854	2	USH2A	1	216595627	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1187213	216595627	32654994	91	58992										
EPRS	0	genome.wustl.edu	37	chr1	220198564	220198564	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttaacctggtagtgctggttCagaagagcagcttttgcatg	12	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	220198564	220198564	C	T	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	silent	c.660	p.L220	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Glu-tRNA-synth_Ib_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	70	0	0	175	53	23.25	-	-	-	T	220198564	C	T	220198564	2	4	679	1	0	0	0	0	0	0	0	1	5228	813	29	2		2	EPRS	1	220198564	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3602937	220198564	29052057	92	58993										
IARS2	0	genome.wustl.edu	37	chr1	220273922	220273922	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attgtcatgggttgcccattGaaataaaagtattatcagaa	8	5	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	220273922	220273922	G	T	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	nonsense	c.481	p.E161*	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	30	0	0	66	30	31.25	-	-	-	T	220273922	G	T	220273922	4	4	679	1	0	0	0	0	0	1	0	0	7528	1291	45	2	491	2	IARS2	1	220273922	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	75358	220273922	28976699	93	58994										
DUSP10	0	genome.wustl.edu	37	chr1	221875834	221875834	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtttaggtcttcctcgaactCtagcaactgccccatgaagt	8	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	221875834	221875834	C	G	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	missense	c.1369	p.E457Q	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	130	0	0	144	46	24.21	-	-	-	G	221875834	C	G	221875834	3	3	679	1	0	0	0	0	1	0	0	0	4845	922	32	2	83	2	DUSP10	1	221875834	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1601912	221875834	27374787	94	58995										
TP53BP2	0	genome.wustl.edu	37	chr1	223990996	223990996	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagctccttatagaggcgatCaagctcagccactgcagact	9	13	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	223990996	223990996	C	T	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	missense	c.808	p.D270N	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	64	0	0	59	25	29.76	-	-	-	T	223990996	C	T	223990996	3	4	679	1	0	0	0	0	1	0	0	0	16480	826	29	2	2644	2	TP53BP2	1	223990996	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2115162	223990996	25259625	95	58996										
PARP1	0	genome.wustl.edu	37	chr1	226555189	226555189	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaccctgttaccttaatgtCagttttgagcttctcatagt	7	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	226555189	226555189	C	T	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.2398	p.D800N	0.998	pfam_Poly(ADP-ribose)pol_cat_dom,pirsf_NAD_ADPRT,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	158	0	0	171	63	26.92	-	-	-	T	226555189	C	T	226555189	3	4	679	1	0	0	0	0	1	0	0	0	11527	826	29	2	674	2	PARP1	1	226555189	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2564193	226555189	22695432	96	58997										
OBSCN	0	genome.wustl.edu	37	chr1	228509154	228509154	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaagacctgggtgatccctCaatggacaaggcagctgtga	12	10	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	228509154	228509154	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	nonsense	c.14612	p.S4871*	0.001	smart_IQ_motif_EF-hand-BS	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	15	0	0	25	11	30.56	-	-	-	G	228509154	C	G	228509154	4	3	679	1	0	0	0	0	0	1	0	0	10885	838	29	2	14826	2	OBSCN	1	228509154	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1953965	228509154	20741467	97	58998										
URB2	0	genome.wustl.edu	37	chr1	229772758	229772758	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagccttccttcatagccctCtctttccagagatgcagtcc	6	15	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	229772758	229772758	C	G	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.2398	p.L800V	0.758	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	23	0	0	97	27	21.77	-	-	-	G	229772758	C	G	229772758	3	3	679	1	0	0	0	0	1	0	0	0	17122	913	32	2	2408	2	URB2	1	229772758	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1263604	229772758	19477863	98	58999										
AGT	0	genome.wustl.edu	37	chr1	230841751	230841751	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctccaccttgtccaggtcaGaggcatagtgaggctggatc	12	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	230841751	230841751	G	C	SNP	AGT	ENST00000366667	human	ensembl	69_37n	-1	known	missense	c.1052	p.S351C	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Angiotensngn	-	no_errors	AGT	HGNC	ENSG00000135744	68	0	0	35	17	32.69	-	-	-	C	230841751	G	C	230841751	3	2	679	1	0	0	0	0	1	0	0	0	399	942	33	2	417	2	AGT	1	230841751	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1068993	230841751	18408870	99	59000										
GGPS1	0	genome.wustl.edu	37	chr1	235505413	235505413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaaactccgacgtggctttCcagtggcccacagcatctat	8	14	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	235505413	235505413	C	T	SNP	GGPS1	ENST00000282841	human	ensembl	69_37n	1	known	missense	c.229	p.P77S	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904	29	0	0	55	15	21.43	-	-	-	T	235505413	C	T	235505413	3	4	679	1	0	0	0	0	1	0	0	0	6412	855	30	2	239	2	GGPS1	1	235505413	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4663662	235505413	13745208	100	59001										
RYR2	0	genome.wustl.edu	37	chr1	237947476	237947476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctattttgaaatcagtgagtCcagccgaacccagtgggaga	11	9	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	237947476	237947476	C	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.12482	p.S4161Y	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	45	0	0	48	20	29.41	-	-	-	A	237947476	C	A	237947476	3	1	679	1	0	0	0	0	1	0	0	0	13855	855	30	2	12822	2	RYR2	1	237947476	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2442063	237947476	11303145	101	59002										
ZNF695	0	genome.wustl.edu	37	chr1	247150774	247150774	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacatcggaaggttttctctCcagtatgaattcttctatgt	7	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	247150774	247150774	C	G	SNP	ZNF695	ENST00000339986	human	ensembl	69_37n	-1	known	missense	c.1043	p.G348A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	56	0	0	97	48	33.1	-	-	-	G	247150774	C	G	247150774	3	3	679	1	0	0	0	0	1	0	0	0	18194	855	30	2	508	2	ZNF695	1	247150774	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9203298	247150774	2099847	102	59003										
OR2T6	0	genome.wustl.edu	37	chr1	248551041	248551041	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccatgatagctaatggggtCatgatcttcctgattaacat	9	8	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	248551041	248551041	C	T	SNP	OR2T6	ENST00000355728	human	ensembl	69_37n	1	known	silent	c.132	p.V44	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T6	HGNC	ENSG00000198104	91	0	0	262	94	26.33	-	-	-	T	248551041	C	T	248551041	2	4	679	1	0	0	0	0	0	0	0	1	11102	813	29	2		2	OR2T6	1	248551041	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1400267	248551041	699580	103	59004										
PGBD2	0	genome.wustl.edu	37	chr1	249212537	249212537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaagggtgtccatgccaaatGcttcagggagtaccacatcc	11	11	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	1	249212537	249212537	G	A	SNP	PGBD2	ENST00000329291	human	ensembl	69_37n	1	known	missense	c.1754	p.C585Y	0.932	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220	117	0	0	74	29	28.16	-	-	-	A	249212537	G	A	249212537	3	1	679	1	0	0	0	0	1	0	0	0	11855	1319	46	4	1760	4	PGBD2	1	249212537	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	661496	249212537	38084	104	59005										
ADI1	0	genome.wustl.edu	37	chr2	3502845	3502845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaacagccgcatggccttCgtgtagttctggaaaacaga	10	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	3502845	3502845	C	T	SNP	ADI1	ENST00000415131	human	ensembl	69_37n	-1	putative	missense	c.241	p.E81K	0.991	superfamily_RmlC_Cupin	superfamily_RmlC_Cupin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADI1	HGNC	ENSG00000182551	20	0	0	15	4	21.05	-	-	-	T	3502845	C	T	3502845	3	4	679	1	0	0	0	0	1	0	0	0	315	871	31	1	114	1	ADI1	2	3502845	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		3502845	239696528	105	59006										
KCNF1	0	genome.wustl.edu	37	chr2	11053362	11053362	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctccccttctacgtgagcctCacgctcacgcacctgggtgc	9	18	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	11053362	11053362	C	T	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	silent	c.810	p.L270	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	17	0	0	10	7	41.18	-	-	-	T	11053362	C	T	11053362	2	4	679	1	0	0	0	0	0	0	0	1	8080	813	29	2		2	KCNF1	2	11053362	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7550517	11053362	232146011	106	59007										
FAM84A	0	genome.wustl.edu	37	chr2	14774939	14774939	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgacgccagcggccgcctgcGagtgctccaggagctcgccg	15	17	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	14774939	14774939	G	C	SNP	FAM84A	ENST00000295092	human	ensembl	69_37n	1	known	missense	c.836	p.R279P	0.988	NULL	pfam_LRAT-like_dom	-	no_errors	FAM84A	HGNC	ENSG00000162981	14	0	0	6	6	50	-	-	-	C	14774939	G	C	14774939	3	2	679	1	0	0	0	0	1	0	0	0	5686	1058	37	3	838	3	FAM84A	2	14774939	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3721577	14774939	228424434	107	59008										
DNMT3A	0	genome.wustl.edu	37	chr2	25467060	25467060	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttattagcgaagaacatctgGagccgggagggccagtcctc	13	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	25467060	25467060	G	A	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	silent	c.1815	p.L605	0.998	superfamily_Znf_FYVE_PHD	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	21	0	0	4	7	63.64	-	-	-	A	25467060	G	A	25467060	2	1	679	1	0	0	0	0	0	0	0	1	4711	1161	41	2		2	DNMT3A	2	25467060	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	10692121	25467060	217732313	108	59009										
GPR113	0	genome.wustl.edu	37	chr2	26569092	26569092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccgagtgggcgctcagttttCgggtcgtcatggctggctac	15	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	26569092	26569092	C	T	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	missense	c.11	p.R4Q	0.975	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	42	0	0	46	28	37.84	-	-	-	T	26569092	C	T	26569092	3	4	679	1	0	0	0	0	1	0	0	0	6680	884	31	1	3487	1	GPR113	2	26569092	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1102032	26569092	216630281	109	59010										
EPT1	0	genome.wustl.edu	37	chr2	26609336	26609336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taggagtagcctcttacgttGagagcattctcctgtataca	9	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	26609336	26609336	G	C	SNP	EPT1	ENST00000260585	human	ensembl	69_37n	1	known	missense	c.1027	p.E343Q	0.999	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	pseudogene	EPT1	HGNC	ENSG00000138018	83	0	0	98	68	40.96	-	-	-	C	26609336	G	C	26609336	3	2	679	1	0	0	0	0	1	0	0	0	5236	1291	45	2	1061	2	EPT1	2	26609336	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	40244	26609336	216590037	110	59011										
EMILIN1	0	genome.wustl.edu	37	chr2	27306468	27306468	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccagggcgctgatctggctGacctgggggcaaccaaggac	16	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	27306468	27306468	G	A	SNP	EMILIN1	ENST00000380320	human	ensembl	69_37n	1	known	missense	c.2029	p.D677N	1.000	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080	20	0	0	22	17	43.59	-	-	-	A	27306468	G	A	27306468	3	1	679	1	0	0	0	0	1	0	0	0	5130	1290	45	2	2043	2	EMILIN1	2	27306468	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	697132	27306468	215892905	111	59012										
SLC4A1AP	0	genome.wustl.edu	37	chr2	27898467	27898467	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atagtgatgatgacacatttCttgataggactggcctgatt	10	6	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	27898467	27898467	C	T	SNP	SLC4A1AP	ENST00000326019	human	ensembl	69_37n	1	known	missense	c.1414	p.L472F	1.000	NULL	pfam_FHA_dom,pfam_Ds-RNA-bd,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798	58	0	0	59	41	41	-	-	-	T	27898467	C	T	27898467	3	4	679	1	0	0	0	0	1	0	0	0	14742	913	32	2	1436	2	SLC4A1AP	2	27898467	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	591999	27898467	215300906	112	59013										
LTBP1	0	genome.wustl.edu	37	chr2	33482404	33482404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttatacggtttctggcgttCatagacgcaggccaatccat	10	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	33482404	33482404	C	T	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.2221	p.H741Y	1.000	superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	36	0	0	49	31	38.75	-	-	-	T	33482404	C	T	33482404	3	4	679	1	0	0	0	0	1	0	0	0	9139	826	29	2	2322	2	LTBP1	2	33482404	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5583937	33482404	209716969	113	59014										
FAM82A1	0	genome.wustl.edu	37	chr2	38202433	38202433	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aactatctacaaacacacaaGaaaagaaacattatgctaat	3	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	38202433	38202433	G	C	SNP	FAM82A1	ENST00000234195	human	ensembl	69_37n	1	known	missense	c.1240	p.E414Q	0.913	NULL	NULL	-	no_errors	FAM82A1	HGNC	ENSG00000115841	93	0	0	80	70	46.67	-	-	-	C	38202433	G	C	38202433	3	2	679	1	0	0	0	0	1	0	0	0	5675	943	33	2	1710	2	FAM82A1	2	38202433	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4720029	38202433	204996940	114	59015										
CDKL4	0	genome.wustl.edu	37	chr2	39456559	39456559	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttaacaacaggatcatcttCagattccacaaattttttaa	3	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	39456559	39456559	C	G	SNP	CDKL4	ENST00000378803	human	ensembl	69_37n	-1	known	missense	c.115	p.E39Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	94	0	0	121	71	36.98	-	-	-	G	39456559	C	G	39456559	3	3	679	1	0	0	0	0	1	0	0	0	3185	835	29	2	864	2	CDKL4	2	39456559	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1254126	39456559	203742814	115	59016										
PREPL	0	genome.wustl.edu	37	chr2	44556128	44556128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atccaccaggacccgcctctCaggcctgaaattcattttca	6	15	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	44556128	44556128	C	G	SNP	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	missense	c.1477	p.E493Q	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9,pfam_Peptidase_S9A_B_C_N,superfamily_Peptidase_S9A_B_C_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078	74	0	0	56	31	35.63	-	-	-	G	44556128	C	G	44556128	3	3	679	1	0	0	0	0	1	0	0	0	12556	835	29	2	730	2	PREPL	2	44556128	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5099569	44556128	198643245	116	59017										
C2orf61	0	genome.wustl.edu	37	chr2	47380124	47380124	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctattctccaccatccttctCtttcaaaagaggaagtcttt	4	12	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	47380124	47380124	C	G	SNP	C2orf61	ENST00000445927	human	ensembl	69_37n	-1	known	missense	c.113	p.R38T	1.000	NULL	NULL	-	no_errors	C2orf61	HGNC	ENSG00000239605	141	0	0	71	60	45.8	-	-	-	G	47380124	C	G	47380124	3	3	679	1	0	0	0	0	1	0	0	0	2200	913	32	2	672	2	C2orf61	2	47380124	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2823996	47380124	195819249	117	59018										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48808340	48808340	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caagtccattttggaaagatGaaggcagtgattcccatttc	9	8	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	48808340	48808340	G	A	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.568	p.E190K	1.000	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	34	0	0	66	26	28.26	-	-	-	A	48808340	G	A	48808340	3	1	679	1	0	0	0	0	1	0	0	0	15408	1291	45	2	570	2	STON1-GTF2A1L	2	48808340	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1428216	48808340	194391033	118	59019										
FSHR	0	genome.wustl.edu	37	chr2	49210299	49210299	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcttgaatcccattcttattCagccatctgaaataaaaggc	5	10	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	49210299	49210299	C	G	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	silent	c.531	p.L177	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	149	0	0	52	36	40.91	-	-	-	G	49210299	C	G	49210299	2	3	679	1	0	0	0	0	0	0	0	1	6122	813	29	2		2	FSHR	2	49210299	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	401959	49210299	193989074	119	59020										
USP34	0	genome.wustl.edu	37	chr2	61475692	61475692	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaaaatcttctgtatagggCgtcatgtccaaacgtaatgg	10	7	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	61475692	61475692	C	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	silent	c.6348	p.T2116	0.925	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	68	0	0	73	33	31.13	-	-	-	T	61475692	C	T	61475692	2	4	679	1	0	0	0	0	0	0	0	1	17162	755	27	1		1	USP34	2	61475692	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12265393	61475692	181723681	120	59021										
XPO1	0	genome.wustl.edu	37	chr2	61719558	61719558	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctactatgtacatgatatttGatgcaataatagctttatta	5	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	61719558	61719558	G	C	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	nonsense	c.1625	p.S542*	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	32	0	0	49	32	39.51	-	-	-	C	61719558	G	C	61719558	4	2	679	1	0	0	0	0	0	1	0	0	17542	1294	45	2	1634	2	XPO1	2	61719558	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	243866	61719558	181479815	121	59022										
TMEM17	0	genome.wustl.edu	37	chr2	62728547	62728547	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggcagatttgttaggccttCattaaagagcaagaaaagaa	11	5	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	62728547	62728547	C	T	SNP	TMEM17	ENST00000335390	human	ensembl	69_37n	-1	known	missense	c.394	p.E132K	1.000	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM17	HGNC	ENSG00000186889	51	0	0	48	33	40.74	-	-	-	T	62728547	C	T	62728547	3	4	679	1	0	0	0	0	1	0	0	0	16180	835	29	2	206	2	TMEM17	2	62728547	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1008989	62728547	180470826	122	59023										
UGP2	0	genome.wustl.edu	37	chr2	64069209	64069209	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taagtagttaaatataggagGagaaagaatacatcggttgt	11	2	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	64069209	64069209	G	A	SNP	UGP2	ENST00000484056	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.087	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764	28	0	0	9	11	55	-	-	-	A	64069209	G	A	64069209	1	1	679	0	1	0	0	0	0	0	0	0	17040	1189	41	2		2	UGP2	2	64069209	RNA	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1340662	64069209	179130164	123	59024										
CNRIP1	0	genome.wustl.edu	37	chr2	68511565	68511565	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cattgaagaatgtgcttattCttcacattcatatgtaagag	7	6	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	68511565	68511565	C	G	SNP	CNRIP1	ENST00000409559	human	ensembl	69_37n	-1	known	missense	c.382	p.E128Q	0.001	NULL	NULL	-	no_errors	CNRIP1	HGNC	ENSG00000119865	47	0	0	35	36	50.7	-	-	-	G	68511565	C	G	68511565	3	3	679	1	0	0	0	0	1	0	0	0	3663	922	32	2	8	2	CNRIP1	2	68511565	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4442356	68511565	174687808	124	59025										
ANXA4	0	genome.wustl.edu	37	chr2	70047897	70047897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagcagaaattgacatgttgGatatccgggcacacttcaag	11	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	70047897	70047897	G	A	SNP	ANXA4	ENST00000394295	human	ensembl	69_37n	1	known	missense	c.850	p.D284N	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975	76	0	0	47	30	38.96	-	-	-	A	70047897	G	A	70047897	3	1	679	1	0	0	0	0	1	0	0	0	719	1174	41	2	892	2	ANXA4	2	70047897	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1536332	70047897	173151476	125	59026										
SNRPG	0	genome.wustl.edu	37	chr2	70516492	70516492	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaacttacatgataacttCttgtccataaatctgaaaaa	3	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	70516492	70516492	C	G	SNP	SNRPG	ENST00000272348	human	ensembl	69_37n	-1	known	missense	c.45	p.K15N	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPG	HGNC	ENSG00000143977	58	0	0	58	33	36.26	-	-	-	G	70516492	C	G	70516492	3	3	679	1	0	0	0	0	1	0	0	0	14958	912	32	2	197	2	SNRPG	2	70516492	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	468595	70516492	172682881	126	59027										
ALMS1	0	genome.wustl.edu	37	chr2	73784481	73784481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttgcagaaagatactgcaGgtagctaaactggattgtct	10	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	73784481	73784481	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.10210	p.D3404N	0.995	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	52	0	0	25	16	39.02	-	-	-	A	73784481	G	A	73784481	3	1	679	1	0	0	0	0	1	0	0	0	535	1014	35	4	10264	4	ALMS1	2	73784481	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3267989	73784481	169414892	127	59028										
C2orf78	0	genome.wustl.edu	37	chr2	74043308	74043308	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaaactggattctcttcctCcaggaccctgggaagctcaa	9	12	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	74043308	74043308	C	G	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.1958	p.S653C	0.401	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	28	0	0	16	12	42.86	-	-	-	G	74043308	C	G	74043308	3	3	679	1	0	0	0	0	1	0	0	0	2215	855	30	2	1968	2	C2orf78	2	74043308	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	258827	74043308	169156065	128	59029										
TACR1	0	genome.wustl.edu	37	chr2	75278398	75278398	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtcattgaggcagcagtaGatgatggggttgtacatggt	15	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	75278398	75278398	G	T	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	silent	c.912	p.I304	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	166	1	0.6	113	64	35.96	-	-	-	T	75278398	G	T	75278398	2	4	679	1	0	0	0	0	0	0	0	1	15597	932	33	2		2	TACR1	2	75278398	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1235090	75278398	167920975	129	59030										
LRRTM4	0	genome.wustl.edu	37	chr2	77745755	77745755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacatgctcatactcttgctCtgcgccaggaatctgaaacc	7	13	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	77745755	77745755	C	T	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	missense	c.1243	p.E415K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	109	0	0	78	57	42.22	-	-	-	T	77745755	C	T	77745755	3	4	679	1	0	0	0	0	1	0	0	0	9108	922	32	2	546	2	LRRTM4	2	77745755	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2467357	77745755	165453618	130	59031										
REG1B	0	genome.wustl.edu	37	chr2	79314715	79314715	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcagggaggagatcagcatGaagaacgagttggtctgagc	15	6	3	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	79314715	79314715	G	A	SNP	REG1B	ENST00000305089	human	ensembl	69_37n	-1	known	silent	c.24	p.F8	0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_Pancreatis_ac,pfscan_C-type_lectin	-	no_errors	REG1B	HGNC	ENSG00000172023	73	0	0	65	31	32.29	-	-	-	A	79314715	G	A	79314715	2	1	679	1	0	0	0	0	0	0	0	1	13294	1281	45	2		2	REG1B	2	79314715	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1568960	79314715	163884658	131	59032										
KDM3A	0	genome.wustl.edu	37	chr2	86705067	86705067	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatgtgtgcgacaccaccatCttcaacctgcactgggtgtg	11	12	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	86705067	86705067	C	G	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.2007	p.I669M	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	209	0	0	114	74	39.15	-	-	-	G	86705067	C	G	86705067	3	3	679	1	0	0	0	0	1	0	0	0	8180	903	32	2	2053	2	KDM3A	2	86705067	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7390352	86705067	156494306	132	59033										
RGPD2	0	genome.wustl.edu	37	chr2	88118137	88118137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttgcaaaatagaatcctctCaacttctaaaaaaaattaaa	2	7	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	88118137	88118137	C	G	SNP	RGPD2	ENST00000398146	human	ensembl	69_37n	-1	known	missense	c.78	p.L26F	1.000	pfscan_TPR-contain_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304	20	0	0	38	10	20.83	-	-	-	G	88118137	C	G	88118137	3	3	679	1	0	0	0	0	1	0	0	0	13369	825	29	2	10643	2	RGPD2	2	88118137	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1413070	88118137	155081236	133	59034										
SNRNP200	0	genome.wustl.edu	37	chr2	96944572	96944572	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggttgtagtaattggggttCtgtgtcatgcggcggtacag	16	5	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	96944572	96944572	C	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	silent	c.5298	p.Q1766	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	109	0	0	84	52	38.24	-	-	-	T	96944572	C	T	96944572	2	4	679	1	0	0	0	0	0	0	0	1	14941	912	32	2		2	SNRNP200	2	96944572	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8826435	96944572	146254801	134	59035										
ANKRD36	0	genome.wustl.edu	37	chr2	97911366	97911366	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gattctttctctgcaactttCtaaagctgagagtaagtcca	7	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	97911366	97911366	C	G	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.5042	p.S1681C	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	32	0	0	29	14	32.56	-	-	-	G	97911366	C	G	97911366	3	3	679	1	0	0	0	0	1	0	0	0	664	913	32	2	5324	2	ANKRD36	2	97911366	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	966794	97911366	145288007	135	59036										
TMEM131	0	genome.wustl.edu	37	chr2	98388801	98388801	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atttctttcttaatatttaaGagttttttgcttttttgctt	4	4	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	98388801	98388801	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	silent	c.4407	p.L1469	0.010	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	310	1	0.32	258	152	36.98	-	-	-	A	98388801	G	A	98388801	2	1	679	1	0	0	0	0	0	0	0	1	16139	929	33	2		2	TMEM131	2	98388801	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	477435	98388801	144810572	136	59037										
AFF3	0	genome.wustl.edu	37	chr2	100170782	100170782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtgcgctcacctcggttttCcttggccaggttgtcggcca	12	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	100170782	100170782	C	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.3625	p.E1209K	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	131	0	0	45	22	32.84	-	-	-	T	100170782	C	T	100170782	3	4	679	1	0	0	0	0	1	0	0	0	358	864	30	2	138	2	AFF3	2	100170782	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1781981	100170782	143028591	137	59038										
MAP4K4	0	genome.wustl.edu	37	chr2	102441849	102441849	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacaccaaagggaacacactCaaagaagactggatcgctta	8	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	102441849	102441849	C	T	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	silent	c.375	p.L125	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	142	0	0	65	47	41.96	-	-	-	T	102441849	C	T	102441849	2	4	679	1	0	0	0	0	0	0	0	1	9333	813	29	2		2	MAP4K4	2	102441849	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2271067	102441849	140757524	138	59039										
SLC9A2	0	genome.wustl.edu	37	chr2	103324815	103324815	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actacagcagccccttctctCtaaagaccagtctggctcag	7	15	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	103324815	103324815	C	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.2306	p.S769C	1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	148	0	0	47	32	40.51	-	-	-	G	103324815	C	G	103324815	3	3	679	1	0	0	0	0	1	0	0	0	14801	913	32	2	2352	2	SLC9A2	2	103324815	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	882966	103324815	139874558	139	59040										
MFSD9	0	genome.wustl.edu	37	chr2	103353179	103353179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggagtcggcagcctccgcctCggttcctgtcttctgctcct	11	16	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	103353179	103353179	C	T	SNP	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	missense	c.91	p.E31K	0.005	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	11	0	0	9	6	40	-	-	-	T	103353179	C	T	103353179	3	4	679	1	0	0	0	0	1	0	0	0	9610	893	31	1	1357	1	MFSD9	2	103353179	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	28364	103353179	139846194	140	59041										
NCK2	0	genome.wustl.edu	37	chr2	106497971	106497971	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggtgaaggggtcgcgcgtCaccgtcatggagaagtgcag	17	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	106497971	106497971	C	T	SNP	NCK2	ENST00000233154	human	ensembl	69_37n	1	known	silent	c.414	p.V138	0.998	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051	24	0	0	12	16	57.14	-	-	-	T	106497971	C	T	106497971	2	4	679	1	0	0	0	0	0	0	0	1	10292	813	29	2		2	NCK2	2	106497971	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3144792	106497971	136701402	141	59042										
POLR1B	0	genome.wustl.edu	37	chr2	113332582	113332582	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcagaagggcattttaagcaGattgtggccggctgaggaca	15	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	113332582	113332582	G	T	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	1	known	missense	c.2798	p.R933I	0.978	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	85	0	0	33	25	43.1	-	-	-	T	113332582	G	T	113332582	3	4	679	1	0	0	0	0	1	0	0	0	12284	942	33	2	2742	2	POLR1B	2	113332582	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6834611	113332582	129866791	142	59043										
INSIG2	0	genome.wustl.edu	37	chr2	118864432	118864432	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttggagtaggaattgccttCttggcaactgtggtcactca	11	9	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	118864432	118864432	C	T	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	silent	c.489	p.F163	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	267	0	0	188	108	36.36	-	-	-	T	118864432	C	T	118864432	2	4	679	1	0	0	0	0	0	0	0	1	7820	912	32	2		2	INSIG2	2	118864432	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5531850	118864432	124334941	143	59044										
INSIG2	0	genome.wustl.edu	37	chr2	118864694	118864694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctccagatttcctctatgttCgttcttggttaccatgtata	6	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	118864694	118864694	C	T	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	missense	c.565	p.R189C	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	116	0	0	105	65	38.24	-	-	-	T	118864694	C	T	118864694	3	4	679	1	0	0	0	0	1	0	0	0	7820	884	31	1	579	1	INSIG2	2	118864694	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	262	118864694	124334679	144	59045										
GLI2	0	genome.wustl.edu	37	chr2	121712909	121712909	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tattaccaccagatgaccctCgtggcaggccaccccgcgcc	9	18	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	121712909	121712909	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	silent	c.546	p.L182	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	21	0	0	10	7	41.18	-	-	-	G	121712909	C	G	121712909	2	3	679	1	0	0	0	0	0	0	0	1	6490	871	31	3		3	GLI2	2	121712909	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2848215	121712909	121486464	145	59046										
CNTNAP5	0	genome.wustl.edu	37	chr2	125521645	125521645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcagtgccgatatttccttCttttttaaaaccacagcatt	4	10	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	125521645	125521645	C	G	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.2451	p.F817L	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	146	0	0	114	51	30.91	-	-	-	G	125521645	C	G	125521645	3	3	679	1	0	0	0	0	1	0	0	0	3680	912	32	2	2513	2	CNTNAP5	2	125521645	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3808736	125521645	117677728	146	59047										
IWS1	0	genome.wustl.edu	37	chr2	128244195	128244195	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccttgtttgaaggcattggGacccttgcacgggcacagaa	12	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	128244195	128244195	G	A	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	silent	c.2262	p.V754	0.766	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	175	0	0	56	27	32.53	-	-	-	A	128244195	G	A	128244195	2	1	679	1	0	0	0	0	0	0	0	1	7985	1161	41	2		2	IWS1	2	128244195	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2722550	128244195	114955178	147	59048										
UGGT1	0	genome.wustl.edu	37	chr2	128938641	128938641	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agttcctgtttgtggatgctGatcaggtaggcccttaaagg	13	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	128938641	128938641	G	T	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.4078	p.D1360Y	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	109	0	0	75	58	43.61	-	-	-	T	128938641	G	T	128938641	3	4	679	1	0	0	0	0	1	0	0	0	17038	1290	45	2	4220	2	UGGT1	2	128938641	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	694446	128938641	114260732	148	59049										
THSD7B	0	genome.wustl.edu	37	chr2	138413174	138413174	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtcgaggatgcactgtgtgGagaaatgccctttcaggaca	13	8	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	138413174	138413174	G	C	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.4058	p.G1353A	1.000	smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	51	0	0	26	33	55.93	-	-	-	C	138413174	G	C	138413174	3	2	679	1	0	0	0	0	1	0	0	0	15975	1174	41	2	4043	2	THSD7B	2	138413174	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	9474533	138413174	104786199	149	59050										
RIF1	0	genome.wustl.edu	37	chr2	152326313	152326313	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagcatctgaaataaaaactCttcctatccgttctccaaaa	3	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	152326313	152326313	C	T	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.7030	p.L2344F	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	53	0	0	60	40	40	-	-	-	T	152326313	C	T	152326313	3	4	679	1	0	0	0	0	1	0	0	0	13443	913	32	2	7160	2	RIF1	2	152326313	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	13913139	152326313	90873060	150	59051										
GALNT5	0	genome.wustl.edu	37	chr2	158162339	158162339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagactgcgatgggagcaaaGaggtatgctaaactgttttc	12	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	158162339	158162339	G	C	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	1	known	missense	c.2518	p.E840Q	0.009	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	180	0	0	156	115	42.44	-	-	-	C	158162339	G	C	158162339	3	2	679	1	0	0	0	0	1	0	0	0	6266	943	33	2	2548	2	GALNT5	2	158162339	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5836026	158162339	85037034	151	59052										
KCNH7	0	genome.wustl.edu	37	chr2	163291796	163291796	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctacactggttaaactgctGaaggtaaaataaagtgctgt	9	7	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	163291796	163291796	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	silent	c.1866	p.F622	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	118	0	0	94	58	38.16	-	-	-	A	163291796	G	A	163291796	2	1	679	1	0	0	0	0	0	0	0	1	8091	1281	45	2		2	KCNH7	2	163291796	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5129457	163291796	79907577	152	59053										
ABCB11	0	genome.wustl.edu	37	chr2	169780194	169780194	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcctttttgggccatcagttCttcatgggtccccttttcaa	7	12	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	169780194	169780194	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.3904	p.E1302*	0.997	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	110	0	0	86	58	40.28	-	-	-	A	169780194	C	A	169780194	4	1	679	1	0	0	0	0	0	1	0	0	42	922	32	2	65	2	ABCB11	2	169780194	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6488398	169780194	73419179	153	59054										
PPIG	0	genome.wustl.edu	37	chr2	170488298	170488298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catctagtgagagtgaagctGaaaatcttgaagcacaaccc	9	9	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	170488298	170488298	G	C	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	1	known	missense	c.784	p.E262Q	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	80	0	0	72	30	29.41	-	-	-	C	170488298	G	C	170488298	3	2	679	1	0	0	0	0	1	0	0	0	12401	1291	45	2	818	2	PPIG	2	170488298	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	708104	170488298	72711075	154	59055										
UBR3	0	genome.wustl.edu	37	chr2	170806568	170806568	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaagaaaacattggacaaaGaagaaaggtaatttttattt	8	2	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	170806568	170806568	G	C	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.3538	p.E1180Q	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	22	0	0	13	10	43.48	-	-	-	C	170806568	G	C	170806568	3	2	679	1	0	0	0	0	1	0	0	0	17000	943	33	2	3628	2	UBR3	2	170806568	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	318270	170806568	72392805	155	59056										
MYO3B	0	genome.wustl.edu	37	chr2	171242759	171242759	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaagcgcccacctgattgttCagcatttgactttcttggga	9	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	171242759	171242759	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	nonsense	c.1378	p.Q460*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	95	0	0	64	43	40.19	-	-	-	T	171242759	C	T	171242759	4	4	679	1	0	0	0	0	0	1	0	0	10149	827	29	2	1401	2	MYO3B	2	171242759	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	436191	171242759	71956614	156	59057										
MYO3B	0	genome.wustl.edu	37	chr2	171243683	171243683	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtggaagcctttgggaactCatgcactgccatcaatgaca	11	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	171243683	171243683	C	G	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	nonsense	c.1469	p.S490*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	59	0	0	43	28	38.89	-	-	-	G	171243683	C	G	171243683	4	3	679	1	0	0	0	0	0	1	0	0	10149	838	29	2	1496	2	MYO3B	2	171243683	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	924	171243683	71955690	157	59058										
HOXD10	0	genome.wustl.edu	37	chr2	176981648	176981648	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggagtgacagtttttattcCagcagcgccagcatgtacat	10	9	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	176981648	176981648	C	T	SNP	HOXD10	ENST00000249501	human	ensembl	69_37n	1	known	silent	c.87	p.S29	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXD10	HGNC	ENSG00000128710	42	0	0	53	18	25	-	-	-	T	176981648	C	T	176981648	2	4	679	1	0	0	0	0	0	0	0	1	7370	581	21	4		4	HOXD10	2	176981648	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5737965	176981648	66217725	158	59059										
TTN	0	genome.wustl.edu	37	chr2	179396528	179396528	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgattcgaggggcatggtcCagtgtgaaaggctgctgact	16	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179396528	179396528	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.97110	p.L32370	0.990	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	94	0	0	26	28	51.85	-	-	-	T	179396528	C	T	179396528	2	4	679	1	0	0	0	0	0	0	0	1	16832	581	21	4		4	TTN	2	179396528	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2414880	179396528	63802845	159	59060										
TTN	0	genome.wustl.edu	37	chr2	179422711	179422711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatgaaagctttggttgtacCactggagttggcagcagtga	13	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179422711	179422711	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.79666	p.G26556S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	35	0	0	37	25	40.32	-	-	-	T	179422711	C	T	179422711	3	4	679	1	0	0	0	0	1	0	0	0	16832	594	21	4	20749	4	TTN	2	179422711	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	26183	179422711	63776662	160	59061										
TTN	0	genome.wustl.edu	37	chr2	179442812	179442812	+	Frame_Shift_Del	DEL	T	T	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggaattcatattcaagaccTtcagttaatcctgtcacttt							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179442812	179442812	T	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.60726	p.G20243fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	38	0	0	91	44	32.35	-	-	-	-	179442812	T	-	179442812	7	5	679	1	0	1	0	1	0	0	0	0	16832	1606	56	0	39713	0	TTN	2	179442812	Frame_Shift_Del	DEL	T	TCGA-D8-A1JA-01A-11D-A13L-09	20101	179442812	63756561	161	59062										
TTN	0	genome.wustl.edu	37	chr2	179449955	179449955	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtggctggatgtgacaacttCatcttctccttttttccatt	7	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179449955	179449955	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.56812	p.E18938K	0.878	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	193	0	0	180	115	38.98	-	-	-	T	179449955	C	T	179449955	3	4	679	1	0	0	0	0	1	0	0	0	16832	835	29	2	43679	2	TTN	2	179449955	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7143	179449955	63749418	162	59063										
TTN	0	genome.wustl.edu	37	chr2	179507028	179507028	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaagtaatttgcgaactttCttttcacctccaggcactta	7	10	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179507028	179507028	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.32790	p.K10930N	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	25	0	0	66	27	28.72	-	-	-	G	179507028	C	G	179507028	3	3	679	1	0	0	0	0	1	0	0	0	16832	912	32	2	67775	2	TTN	2	179507028	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	57073	179507028	63692345	163	59064										
TTN	0	genome.wustl.edu	37	chr2	179599238	179599238	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtctttgaaccagctaatttCaaatggtccagtgcctgaga	9	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179599238	179599238	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.11581	p.E3861Q	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	17	0	0	23	24	51.06	-	-	-	G	179599238	C	G	179599238	3	3	679	1	0	0	0	0	1	0	0	0	16832	835	29	2	89460	2	TTN	2	179599238	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	92210	179599238	63600135	164	59065										
TTN	0	genome.wustl.edu	37	chr2	179641336	179641336	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acccaaattcattgatcataCggagcctgttggctgcttca	8	11	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	179641336	179641336	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.5255	p.R1752H	0.999	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	30	0	0	22	20	47.62	-	-	-	T	179641336	C	T	179641336	3	4	679	1	0	0	0	0	1	0	0	0	16832	536	19	1	106073	1	TTN	2	179641336	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	42098	179641336	63558037	165	59066										
SSFA2	0	genome.wustl.edu	37	chr2	182783380	182783380	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccatatagtactcagaaatCatctgttctacctctttatg	4	10	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	182783380	182783380	C	T	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	1	known	missense	c.2843	p.S948L	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	79	0	0	104	63	37.72	-	-	-	T	182783380	C	T	182783380	3	4	679	1	0	0	0	0	1	0	0	0	15274	838	29	2	2889	2	SSFA2	2	182783380	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3142044	182783380	60415993	166	59067										
ZSWIM2	0	genome.wustl.edu	37	chr2	187703766	187703766	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcctctgaatcaatttccttCtgtttaatgtacccatcttc	3	12	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	187703766	187703766	C	T	SNP	ZSWIM2	ENST00000295131	human	ensembl	69_37n	-1	known	silent	c.414	p.Q138	1.000	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	60	0	0	87	64	42.38	-	-	-	T	187703766	C	T	187703766	2	4	679	1	0	0	0	0	0	0	0	1	18332	912	32	2		2	ZSWIM2	2	187703766	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4920386	187703766	55495607	167	59068										
COL5A2	0	genome.wustl.edu	37	chr2	189910542	189910542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttaccggatctcctctttgtCctgcatctcctggagcaccc	7	16	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	189910542	189910542	C	G	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.3293	p.G1098A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	64	0	0	32	11	25.58	-	-	-	G	189910542	C	G	189910542	3	3	679	1	0	0	0	0	1	0	0	0	3727	855	30	2	1242	2	COL5A2	2	189910542	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2206776	189910542	53288831	168	59069										
WDR75	0	genome.wustl.edu	37	chr2	190323496	190323496	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taggtttactttatcatcatCaagaaataagaagcatgcta	6	6	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	190323496	190323496	C	G	SNP	WDR75	ENST00000314761	human	ensembl	69_37n	1	known	nonsense	c.587	p.S196*	0.996	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR75	HGNC	ENSG00000115368	40	0	0	20	12	37.5	-	-	-	G	190323496	C	G	190323496	4	3	679	1	0	0	0	0	0	1	0	0	17422	838	29	2	613	2	WDR75	2	190323496	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	412954	190323496	52875877	169	59070										
OSGEPL1	0	genome.wustl.edu	37	chr2	190615347	190615347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtacttttatggaagcttctCcaacttcttttgatatgtct	6	8	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	190615347	190615347	C	G	SNP	OSGEPL1	ENST00000264151	human	ensembl	69_37n	-1	known	missense	c.1202	p.G401A	0.836	NULL	pfam_Peptidase_M22,prints_Peptidase_M22_subgr,tigrfam_Peptidase_M22_subgr	-	no_errors	OSGEPL1	HGNC	ENSG00000128694	38	0	0	67	51	43.22	-	-	-	G	190615347	C	G	190615347	3	3	679	1	0	0	0	0	1	0	0	0	11361	855	30	2	46	2	OSGEPL1	2	190615347	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	291851	190615347	52584026	170	59071										
DNAH7	0	genome.wustl.edu	37	chr2	196674589	196674589	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtaaagtgatccttgagaatCtgaagcctaagggtcaacag	11	7	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	196674589	196674589	C	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.9768	p.Q3256H	0.834	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	45	0	0	32	15	31.91	-	-	-	G	196674589	C	G	196674589	3	3	679	1	0	0	0	0	1	0	0	0	4641	912	32	2	2362	2	DNAH7	2	196674589	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6059242	196674589	46524784	171	59072										
HSPD1	0	genome.wustl.edu	37	chr2	198358179	198358179	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctagaaattttcttttcactCaacagaacataggcatcctg	5	10	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	198358179	198358179	C	T	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	silent	c.738	p.L246	0.502	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	10	0	0	45	20	30.77	-	-	-	T	198358179	C	T	198358179	2	4	679	1	0	0	0	0	0	0	0	1	7482	825	29	2		2	HSPD1	2	198358179	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1683590	198358179	44841194	172	59073										
ALS2	0	genome.wustl.edu	37	chr2	202625594	202625594	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacttttattttataaaattGagcaggtacctgagatggca	8	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	202625594	202625594	G	C	SNP	ALS2	ENST00000467448	human	ensembl	69_37n	-1	known	missense	c.1123	p.Q375E	0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393	56	0	0	50	25	33.33	-	-	-	C	202625594	G	C	202625594	3	2	679	1	0	0	0	0	1	0	0	0	550	1299	45	2	4052	2	ALS2	2	202625594	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4267415	202625594	40573779	173	59074										
FAM117B	0	genome.wustl.edu	37	chr2	203630268	203630268	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctttctgcctcgtcagcatCctcaagccactccttcctac	5	18	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	203630268	203630268	C	T	SNP	FAM117B	ENST00000392238	human	ensembl	69_37n	1	known	silent	c.1551	p.I517	1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	61	0	0	38	17	30.91	-	-	-	T	203630268	C	T	203630268	2	4	679	1	0	0	0	0	0	0	0	1	5450	845	30	2		2	FAM117B	2	203630268	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1004674	203630268	39569105	174	59075										
NBEAL1	0	genome.wustl.edu	37	chr2	204016194	204016194	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgaatattcttaggaaacaGaatccaattcactggaagct	7	7	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	204016194	204016194	G	A	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	silent	c.5382	p.Q1794	0.988	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	51	0	0	45	27	37.5	-	-	-	A	204016194	G	A	204016194	2	1	679	1	0	0	0	0	0	0	0	1	10260	933	33	2		2	NBEAL1	2	204016194	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	385926	204016194	39183179	175	59076										
ZDBF2	0	genome.wustl.edu	37	chr2	207171381	207171381	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcttctctgagttctgattCtccggcttctctttatcatt	5	11	6	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	207171381	207171381	C	G	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.2129	p.S710C	0.934	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	54	0	0	26	19	42.22	-	-	-	G	207171381	C	G	207171381	3	3	679	1	0	0	0	0	1	0	0	0	17695	913	32	2	2139	2	ZDBF2	2	207171381	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3155187	207171381	36027992	176	59077										
ZDBF2	0	genome.wustl.edu	37	chr2	207172836	207172836	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggtaagcacaatcaatgttGtggttctgaagtaagttttg	11	4	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	207172836	207172836	G	C	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.3584	p.C1195S	0.869	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	44	0	0	37	27	42.19	-	-	-	C	207172836	G	C	207172836	3	2	679	1	0	0	0	0	1	0	0	0	17695	1377	48	4	3594	4	ZDBF2	2	207172836	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1455	207172836	36026537	177	59078										
ZDBF2	0	genome.wustl.edu	37	chr2	207175364	207175364	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcaccatagttgggataatGatattcggtttatatgcaaa	10	5	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	207175364	207175364	G	C	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.6112	p.D2038H	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	16	0	0	20	9	31.03	-	-	-	C	207175364	G	C	207175364	3	2	679	1	0	0	0	0	1	0	0	0	17695	1290	45	2	6122	2	ZDBF2	2	207175364	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2528	207175364	36024009	178	59079										
CRYGD	0	genome.wustl.edu	37	chr2	208986459	208986459	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attcgtggccccccagtcctGgtagcgcctatagtcccctg	10	16	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	208986459	208986459	G	A	SNP	CRYGD	ENST00000264376	human	ensembl	69_37n	-1	known	nonsense	c.463	p.Q155*	0.005	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231	21	0	0	27	14	34.15	-	-	-	A	208986459	G	A	208986459	4	1	679	1	0	0	0	0	0	1	0	0	3947	1357	47	4	65	4	CRYGD	2	208986459	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1811095	208986459	34212914	179	59080										
ABCA12	0	genome.wustl.edu	37	chr2	215846980	215846980	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcaactccagtagatggttCatccaaaattactacccttg	6	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	215846980	215846980	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.4510	p.E1504K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	58	0	0	23	37	61.67	-	-	-	T	215846980	C	T	215846980	3	4	679	1	0	0	0	0	1	0	0	0	30	835	29	2	3373	2	ABCA12	2	215846980	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6860521	215846980	27352393	180	59081										
SPHKAP	0	genome.wustl.edu	37	chr2	228881474	228881474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctcgggcaatcgagagactCctgaacaagcagagttggcc	12	12	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	228881474	228881474	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4096	p.E1366K	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	35	0	0	10	31	75.61	-	-	-	T	228881474	C	T	228881474	3	4	679	1	0	0	0	0	1	0	0	0	15139	864	30	2	1030	2	SPHKAP	2	228881474	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	13034494	228881474	14317899	181	59082										
B3GNT7	0	genome.wustl.edu	37	chr2	232263034	232263034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgaagaccgcctctacggcGacatcctgcagtggggcttt	12	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	232263034	232263034	G	A	SNP	B3GNT7	ENST00000287590	human	ensembl	69_37n	1	known	missense	c.604	p.D202N	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966	9	0	0	5	12	70.59	-	-	-	A	232263034	G	A	232263034	3	1	679	1	0	0	0	0	1	0	0	0	1266	1058	37	1	610	1	B3GNT7	2	232263034	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3381560	232263034	10936339	182	59083										
INPP5D	0	genome.wustl.edu	37	chr2	233986823	233986823	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgttctgtcctcaggcatccGaaggcgtctccatgaggttc	11	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	233986823	233986823	G	T	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	1	known	nonsense	c.205	p.E69*	0.997	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	26	0	0	14	22	61.11	-	-	-	T	233986823	G	T	233986823	4	4	679	1	0	0	0	0	0	1	0	0	7810	1059	37	3	215	3	INPP5D	2	233986823	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1723789	233986823	9212550	183	59084										
DGKD	0	genome.wustl.edu	37	chr2	234346099	234346099	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtgtcagtcatcccacccaCggctctcaacagcatcgact	7	16	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	234346099	234346099	C	T	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.896	p.T299M	0.998	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	73	0	0	26	33	55.93	-	-	-	T	234346099	C	T	234346099	3	4	679	1	0	0	0	0	1	0	0	0	4503	536	19	1	950	1	DGKD	2	234346099	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	359276	234346099	8853274	184	59085										
COL6A3	0	genome.wustl.edu	37	chr2	238285970	238285970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgagccgtcaaagaggaacaGaatgtctcgcttgctctctg	11	10	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	238285970	238285970	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.2515	p.L839	0.981	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	55	0	0	8	12	60	-	-	-	A	238285970	G	A	238285970	2	1	679	1	0	0	0	0	0	0	0	1	3731	933	33	2		2	COL6A3	2	238285970	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3939871	238285970	4913403	185	59086										
ANKMY1	0	genome.wustl.edu	37	chr2	241465200	241465200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagtgccgtgagaccctcatCtgagcacttgttcacgtcgg	12	12	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	2	241465200	241465200	C	T	SNP	ANKMY1	ENST00000272972	human	ensembl	69_37n	-1	known	missense	c.970	p.D324N	0.465	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504	37	0	0	20	24	53.33	-	-	-	T	241465200	C	T	241465200	3	4	679	1	0	0	0	0	1	0	0	0	634	913	32	2	1903	2	ANKMY1	2	241465200	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3179230	241465200	1734173	186	59087										
CNTN4	0	genome.wustl.edu	37	chr3	3085365	3085365	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagtgaaggccctggataatGagtcggaagtaaaaggatac	13	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	3085365	3085365	G	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	missense	c.2788	p.E930Q	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	34	0	0	64	30	31.91	-	-	-	C	3085365	G	C	3085365	3	2	679	1	0	0	0	0	1	0	0	0	3673	1291	45	2	2866	2	CNTN4	3	3085365	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		3085365	194937065	187	59088										
IRAK2	0	genome.wustl.edu	37	chr3	10258684	10258684	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agacagtttcacagcttcatCtacccctacatggcaaatgg	7	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	10258684	10258684	C	T	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	silent	c.855	p.I285	0.960	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	102	0	0	50	31	38.27	-	-	-	T	10258684	C	T	10258684	2	4	679	1	0	0	0	0	0	0	0	1	7877	903	32	2		2	IRAK2	3	10258684	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7173319	10258684	187763746	188	59089										
C3orf20	0	genome.wustl.edu	37	chr3	14769960	14769960	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taacaggtctgtttaccattGaatatcccaccaaaaaggag	7	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	14769960	14769960	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	missense	c.1705	p.E569K	0.006	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	44	0	0	36	27	42.86	-	-	-	A	14769960	G	A	14769960	3	1	679	1	0	0	0	0	1	0	0	0	2233	1291	45	2	1743	2	C3orf20	3	14769960	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4511276	14769960	183252470	189	59090										
TBC1D5	0	genome.wustl.edu	37	chr3	17415966	17415966	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtactataagatttaccttCtgaccatcatgctcaaaagt	5	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	17415966	17415966	C	G	SNP	TBC1D5	ENST00000253692	human	ensembl	69_37n	-1	known	missense	c.819	p.Q273H	0.991	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	74	0	0	60	42	40.78	-	-	-	G	17415966	C	G	17415966	3	3	679	1	0	0	0	0	1	0	0	0	15718	912	32	2	1682	2	TBC1D5	3	17415966	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2646006	17415966	180606464	190	59091										
NR1D2	0	genome.wustl.edu	37	chr3	24004051	24004051	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatggattttctcagaatgaGaacaagaatagttacctgtg	10	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	24004051	24004051	G	A	SNP	NR1D2	ENST00000312521	human	ensembl	69_37n	1	known	silent	c.1101	p.E367	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738	15	0	0	8	14	63.64	-	-	-	A	24004051	G	A	24004051	2	1	679	1	0	0	0	0	0	0	0	1	10689	933	33	2		2	NR1D2	3	24004051	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6588085	24004051	174018379	191	59092										
NR1D2	0	genome.wustl.edu	37	chr3	24006542	24006542	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctgggaagaattttcgatGagcttcactccagcagtgaa	10	8	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	24006542	24006542	G	T	SNP	NR1D2	ENST00000312521	human	ensembl	69_37n	1	known	missense	c.1221	p.M407I	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738	53	0	0	41	35	46.05	-	-	-	T	24006542	G	T	24006542	3	4	679	1	0	0	0	0	1	0	0	0	10689	1290	45	2	1243	2	NR1D2	3	24006542	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2491	24006542	174015888	192	59093										
RARB	0	genome.wustl.edu	37	chr3	25635067	25635067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agacggccttaccctaaatcGaactcagatgcacaatgctg	8	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	25635067	25635067	G	A	SNP	RARB	ENST00000404969	human	ensembl	69_37n	1	known	missense	c.881	p.R294Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoic_acid_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	129	0	0	90	64	41.56	-	-	-	A	25635067	G	A	25635067	3	1	679	1	0	0	0	0	1	0	0	0	13136	1058	37	1	882	1	RARB	3	25635067	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1628525	25635067	172387363	193	59094										
SLC22A13	0	genome.wustl.edu	37	chr3	38317565	38317565	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgggtggcctgatgtgtatCatcatcatcttcatcccagc	9	11	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	38317565	38317565	C	T	SNP	SLC22A13	ENST00000311856	human	ensembl	69_37n	1	known	silent	c.1215	p.I405	0.001	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A13	HGNC	ENSG00000172940	50	0	0	40	15	27.27	-	-	-	T	38317565	C	T	38317565	2	4	679	1	0	0	0	0	0	0	0	1	14533	816	29	2		2	SLC22A13	3	38317565	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12682498	38317565	159704865	194	59095										
SCN11A	0	genome.wustl.edu	37	chr3	38938592	38938592	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaagctgcatgccaactactGagaaaataaagatcacaatg	7	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	38938592	38938592	G	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	nonsense	c.2147	p.S716*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	92	0	0	43	22	33.85	-	-	-	C	38938592	G	C	38938592	4	2	679	1	0	0	0	0	0	1	0	0	14001	1294	45	2	3280	2	SCN11A	3	38938592	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	621027	38938592	159083838	195	59096										
ZNF501	0	genome.wustl.edu	37	chr3	44776036	44776036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcatctcttacccagcaccaGaggattcacagaggagagaa	9	11	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	44776036	44776036	G	C	SNP	ZNF501	ENST00000396048	human	ensembl	69_37n	1	known	missense	c.123	p.Q41H	0.957	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF501	HGNC	ENSG00000186446	51	0	0	93	68	41.98	-	-	-	C	44776036	G	C	44776036	3	2	679	1	0	0	0	0	1	0	0	0	18045	933	33	2	125	2	ZNF501	3	44776036	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5837444	44776036	153246394	196	59097										
CDCP1	0	genome.wustl.edu	37	chr3	45127237	45127237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaggtgtacggttcactctCagactcaggaggggagcgag	16	8	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	45127237	45127237	C	G	SNP	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	missense	c.2404	p.E802Q	0.188	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	164	0	0	60	25	29.41	-	-	-	G	45127237	C	G	45127237	3	3	679	1	0	0	0	0	1	0	0	0	3122	835	29	2	110	2	CDCP1	3	45127237	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	351201	45127237	152895193	197	59098										
FYCO1	0	genome.wustl.edu	37	chr3	46010171	46010171	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtttagggggctgttcaggtCaaagttggacaccatctctt	12	8	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	46010171	46010171	C	G	SNP	FYCO1	ENST00000535325	human	ensembl	69_37n	-1	known	missense	c.655	p.D219H	0.990	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820	25	0	0	30	12	28.57	-	-	-	G	46010171	C	G	46010171	3	3	679	1	0	0	0	0	1	0	0	0	6174	826	29	2	3825	2	FYCO1	3	46010171	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	882934	46010171	152012259	198	59099										
LTF	0	genome.wustl.edu	37	chr3	46496919	46496919	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaacacagctggctgagaaGaacctggccacagctgttaa	12	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	46496919	46496919	G	C	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	missense	c.513	p.F171L	1.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	94	0	0	33	14	29.79	-	-	-	C	46496919	G	C	46496919	3	2	679	1	0	0	0	0	1	0	0	0	9145	933	33	2	1671	2	LTF	3	46496919	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	486748	46496919	151525511	199	59100										
SETD2	0	genome.wustl.edu	37	chr3	47164273	47164273	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgaatcatttaatcgatttGatggagctggagacccagcc	11	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	47164273	47164273	G	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	nonsense	c.1853	p.S618*	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	18	0	0	11	11	50	-	-	-	C	47164273	G	C	47164273	4	2	679	1	0	0	0	0	0	1	0	0	14219	1294	45	2	5917	2	SETD2	3	47164273	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	667354	47164273	150858157	200	59101										
SETD2	0	genome.wustl.edu	37	chr3	47164366	47164366	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggtgtctgtaaactaaaaGaatgagactgtttgatttct	9	4	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	47164366	47164366	G	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.1760	p.S587C	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	25	0	0	16	13	44.83	-	-	-	C	47164366	G	C	47164366	3	2	679	1	0	0	0	0	1	0	0	0	14219	942	33	2	6010	2	SETD2	3	47164366	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	93	47164366	150858064	201	59102										
PLXNB1	0	genome.wustl.edu	37	chr3	48453384	48453384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccacttggtgcttaatccctCgaaagagcatgtacagaggc	10	11	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	48453384	48453384	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	missense	c.5135	p.R1712Q	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	38	0	0	45	32	41.56	-	-	-	T	48453384	C	T	48453384	3	4	679	1	0	0	0	0	1	0	0	0	12197	884	31	1	1316	1	PLXNB1	3	48453384	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1289018	48453384	149569046	202	59103										
USP19	0	genome.wustl.edu	37	chr3	49147699	49147699	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggggggcctctccacaggaGagttccgccggcggtagaag	17	11	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49147699	49147699	G	C	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	missense	c.3647	p.S1216C	1.000	NULL	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	18	0	0	15	11	42.31	-	-	-	C	49147699	G	C	49147699	3	2	679	1	0	0	0	0	1	0	0	0	17147	942	33	2	317	2	USP19	3	49147699	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	694315	49147699	148874731	203	59104										
USP19	0	genome.wustl.edu	37	chr3	49148493	49148493	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcagagcctggatcctcagcAcattccagctccttggaggc	11	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49148493	49148493	A	G	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	silent	c.3126	p.C1042	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	21	0	0	14	11	44	-	-	-	G	49148493	A	G	49148493	2	3	679	1	0	0	0	0	0	0	0	1	17147	157	6	5		5	USP19	3	49148493	Silent	SNP	A	TCGA-D8-A1JA-01A-11D-A13L-09	794	49148493	148873937	204	59105										
USP4	0	genome.wustl.edu	37	chr3	49365238	49365238	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taagtgttctttcaaggtctGactctcaggatctaaaaaag	8	7	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49365238	49365238	G	C	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.241	p.Q81E	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	24	0	0	37	27	42.19	-	-	-	C	49365238	G	C	49365238	3	2	679	1	0	0	0	0	1	0	0	0	17168	1299	45	2	2730	2	USP4	3	49365238	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	216745	49365238	148657192	205	59106										
RHOA	0	genome.wustl.edu	37	chr3	49399964	49399964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagctcccgccttgtgtgctCatcattccgaagatccttct	7	14	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49399964	49399964	C	G	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.373	p.E125Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	53	0	0	34	41	54.67	-	-	-	G	49399964	C	G	49399964	3	3	679	1	0	0	0	0	1	0	0	0	13415	835	29	2	216	2	RHOA	3	49399964	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	34726	49399964	148622466	206	59107										
DAG1	0	genome.wustl.edu	37	chr3	49547891	49547891	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggagcaggtgtgcagagggtGagaacccagctctgggacca	17	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49547891	49547891	G	C	SNP	DAG1	ENST00000466701	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DAG1	HGNC	ENSG00000173402	17	0	0	12	11	47.83	-	-	-	C	49547891	G	C	49547891	1	2	679	0	1	0	0	0	0	0	0	0	4257	1305	45	2		2	DAG1	3	49547891	RNA	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	147927	49547891	148474539	207	59108										
AMIGO3	0	genome.wustl.edu	37	chr3	49756337	49756337	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccggttggaggagaggtccaGagtaagcaggtgggtggcgc	20	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	49756337	49756337	G	C	SNP	AMIGO3	ENST00000320431	human	ensembl	69_37n	-1	known	missense	c.562	p.L188V	0.993	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	AMIGO3	HGNC	ENSG00000176020	20	0	0	16	13	44.83	-	-	-	C	49756337	G	C	49756337	3	2	679	1	0	0	0	0	1	0	0	0	577	933	33	2	956	2	AMIGO3	3	49756337	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	208446	49756337	148266093	208	59109										
PPM1M	0	genome.wustl.edu	37	chr3	52282423	52282423	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcggcggctgaagggggatGacttgggacagaaggttttg	18	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	52282423	52282423	G	A	SNP	PPM1M	ENST00000457351	human	ensembl	69_37n	1	known	missense	c.868	p.D290N	1.000	superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1M	HGNC	ENSG00000164088	103	0	0	31	19	38	-	-	-	A	52282423	G	A	52282423	3	1	679	1	0	0	0	0	1	0	0	0	12422	1290	45	2	399	2	PPM1M	3	52282423	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2526086	52282423	145740007	209	59110										
ITIH3	0	genome.wustl.edu	37	chr3	52842588	52842588	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggctcccagaaagactacaGaaaggatgccagcatcggca	12	11	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	52842588	52842588	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	69_37n	1	known	missense	c.2564	p.R855K	1.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267	61	0	0	30	22	42.31	-	-	-	A	52842588	G	A	52842588	3	1	679	1	0	0	0	0	1	0	0	0	7959	942	33	2	2650	2	ITIH3	3	52842588	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	560165	52842588	145179842	210	59111										
PRKCD	0	genome.wustl.edu	37	chr3	53217174	53217174	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacaagaaatgcatcgacaaGatcatcggcagatgcactgg	10	10	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	53217174	53217174	G	C	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	missense	c.609	p.K203N	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	39	0	0	19	12	38.71	-	-	-	C	53217174	G	C	53217174	3	2	679	1	0	0	0	0	1	0	0	0	12590	933	33	2	631	2	PRKCD	3	53217174	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	374586	53217174	144805256	211	59112										
ERC2	0	genome.wustl.edu	37	chr3	55922574	55922574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagtgcattcatcagttcctCtatctgaaaggcacatggag	9	10	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	55922574	55922574	C	G	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	missense	c.2407	p.E803Q	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	238	0	0	103	76	42.46	-	-	-	G	55922574	C	G	55922574	3	3	679	1	0	0	0	0	1	0	0	0	5248	922	32	2	482	2	ERC2	3	55922574	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2705400	55922574	142099856	212	59113										
FHIT	0	genome.wustl.edu	37	chr3	59999791	59999791	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttccaccactgtcccgactCtctgggtcgtctgaaacaaa	7	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	59999791	59999791	C	G	SNP	FHIT	ENST00000341848	human	ensembl	69_37n	-1	known	missense	c.191	p.R64T	1.000	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_Histidine_triad_HIT	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_Histidine_triad_HIT	-	no_errors	FHIT	HGNC	ENSG00000189283	70	0	0	38	23	37.7	-	-	-	G	59999791	C	G	59999791	3	3	679	1	0	0	0	0	1	0	0	0	5923	913	32	2	268	2	FHIT	3	59999791	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4077217	59999791	138022639	213	59114										
PTPRG	0	genome.wustl.edu	37	chr3	62268432	62268432	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcttagaagttcggcactttCagtgtcccaaatggcctaac	8	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	62268432	62268432	C	G	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.3943	p.Q1315E	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	69	0	0	74	39	34.51	-	-	-	G	62268432	C	G	62268432	3	3	679	1	0	0	0	0	1	0	0	0	12885	827	29	2	4053	2	PTPRG	3	62268432	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2268641	62268432	135753998	214	59115										
ADAMTS9	0	genome.wustl.edu	37	chr3	64589998	64589998	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggaggatgacatgatggtaAttcacagtcctagacgtgat	13	6	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	64589998	64589998	A	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.3484	p.L1162I	0.988	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	37	0	0	27	37	57.81	-	-	-	T	64589998	A	T	64589998	3	4	679	1	0	0	0	0	1	0	0	0	273	98	4	5	2387	5	ADAMTS9	3	64589998	Missense_Mutation	SNP	A	TCGA-D8-A1JA-01A-11D-A13L-09	2321566	64589998	133432432	215	59116										
MAGI1	0	genome.wustl.edu	37	chr3	65349277	65349277	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagttccacagtgtaaaaatCttgctcctatttaaagaaat	5	8	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	65349277	65349277	C	G	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3358	p.D1120H	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	23	0	0	24	10	29.41	-	-	-	G	65349277	C	G	65349277	3	3	679	1	0	0	0	0	1	0	0	0	9261	913	32	2	1185	2	MAGI1	3	65349277	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	759279	65349277	132673153	216	59117										
TMF1	0	genome.wustl.edu	37	chr3	69096739	69096739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcttcagattttccttcagCagattcaactgttttagact	5	9	4	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	69096739	69096739	C	T	SNP	TMF1	ENST00000543976	human	ensembl	69_37n	-1	known	missense	c.1117	p.A373T	0.291	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	54	0	0	47	26	35.62	-	-	-	T	69096739	C	T	69096739	3	4	679	1	0	0	0	0	1	0	0	0	16323	710	25	4	2228	4	TMF1	3	69096739	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3747462	69096739	128925691	217	59118										
ROBO2	0	genome.wustl.edu	37	chr3	77607285	77607285	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caagagcaaggcacactgcaGattaagaatttacgggtaag	11	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	77607285	77607285	G	C	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1422	p.Q474H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	32	0	0	18	20	52.63	-	-	-	C	77607285	G	C	77607285	3	2	679	1	0	0	0	0	1	0	0	0	13600	933	33	2	1458	2	ROBO2	3	77607285	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8510546	77607285	120415145	218	59119										
ROBO1	0	genome.wustl.edu	37	chr3	78695325	78695325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cactgctgacagcttcgcctCctctctggtaagttactaga	8	13	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	78695325	78695325	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.2855	p.G952E	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	75	0	0	74	51	40.8	-	-	-	T	78695325	C	T	78695325	3	4	679	1	0	0	0	0	1	0	0	0	13599	855	30	2	2144	2	ROBO1	3	78695325	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1088040	78695325	119327105	219	59120										
CADM2	0	genome.wustl.edu	37	chr3	86010687	86010687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaccgaatggttgtgagtgGtagggagctaaacattcttt	13	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	86010687	86010687	G	C	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.839	p.G280A	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	58	0	0	39	23	37.1	-	-	-	C	86010687	G	C	86010687	3	2	679	1	0	0	0	0	1	0	0	0	2592	1261	44	4	930	4	CADM2	3	86010687	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7315362	86010687	112011743	220	59121										
WDR52	0	genome.wustl.edu	37	chr3	113092289	113092289	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtttggatgggattgtcctCtgtatccgcaagataacgga	12	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	113092289	113092289	C	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.2413	p.E805K	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	98	0	0	56	30	34.88	-	-	-	T	113092289	C	T	113092289	3	4	679	1	0	0	0	0	1	0	0	0	17401	922	32	2	3238	2	WDR52	3	113092289	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	27081602	113092289	84930141	221	59122										
KIAA2018	0	genome.wustl.edu	37	chr3	113377063	113377063	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaagcaacttcccttatatCagcctggaggccaactctcc	7	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	113377063	113377063	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.3466	p.D1156N	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	85	0	0	88	33	27.27	-	-	-	T	113377063	C	T	113377063	3	4	679	1	0	0	0	0	1	0	0	0	8320	826	29	2	3275	2	KIAA2018	3	113377063	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	284774	113377063	84645367	222	59123										
ARHGAP31	0	genome.wustl.edu	37	chr3	119120914	119120914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaaggttttccggcctgttGaggatccggagagcgagcaa	15	8	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	119120914	119120914	G	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.1315	p.E439Q	0.999	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	45	0	0	21	14	40	-	-	-	C	119120914	G	C	119120914	3	2	679	1	0	0	0	0	1	0	0	0	882	1291	45	2	1353	2	ARHGAP31	3	119120914	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5743851	119120914	78901516	223	59124										
TMEM39A	0	genome.wustl.edu	37	chr3	119151002	119151002	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaatagagctgatagaagacGacactgccctcaataaggat	10	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	119151002	119151002	G	A	SNP	TMEM39A	ENST00000319172	human	ensembl	69_37n	-1	known	silent	c.1293	p.V431	0.995	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142	48	0	0	26	20	43.48	-	-	-	A	119151002	G	A	119151002	2	1	679	1	0	0	0	0	0	0	0	1	16256	1045	37	1		1	TMEM39A	3	119151002	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	30088	119151002	78871428	224	59125										
DTX3L	0	genome.wustl.edu	37	chr3	122288505	122288505	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaaagaaattgaaagagggTcatgaaacaccgatggacat	12	5	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	122288505	122288505	T	G	SNP	DTX3L	ENST00000296161	human	ensembl	69_37n	1	known	silent	c.1569	p.G523	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840	66	0	0	39	20	33.9	-	-	-	G	122288505	T	G	122288505	2	3	679	1	0	0	0	0	0	0	0	1	4831	1654	58	5		5	DTX3L	3	122288505	Silent	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	3137503	122288505	75733925	225	59126										
PDIA5	0	genome.wustl.edu	37	chr3	122873880	122873880	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgctgatgccttcaaagatGaccgaaaggtaaggacagcg	12	9	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	122873880	122873880	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.1336	p.D446N	1.000	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	59	0	0	33	23	41.07	-	-	-	A	122873880	G	A	122873880	3	1	679	1	0	0	0	0	1	0	0	0	11744	1290	45	2	1394	2	PDIA5	3	122873880	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	585375	122873880	75148550	226	59127										
CCDC14	0	genome.wustl.edu	37	chr3	123634236	123634236	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatcctgttttgaaagggcaGaaataattccaggtgcagat	10	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	123634236	123634236	G	A	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.2252	p.S751F	0.015	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	78	0	0	60	40	40	-	-	-	A	123634236	G	A	123634236	3	1	679	1	0	0	0	0	1	0	0	0	2798	942	33	2	613	2	CCDC14	3	123634236	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	760356	123634236	74388194	227	59128										
KALRN	0	genome.wustl.edu	37	chr3	124165622	124165622	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcccataggcgcttgactggAtccaagaaacaggtgaattt	10	9	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	124165622	124165622	A	T	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.3436	p.I1146F	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	90	0	0	24	17	41.46	-	-	-	T	124165622	A	T	124165622	3	4	679	1	0	0	0	0	1	0	0	0	8029	333	12	5	3518	5	KALRN	3	124165622	Missense_Mutation	SNP	A	TCGA-D8-A1JA-01A-11D-A13L-09	531386	124165622	73856808	228	59129										
C3orf37	0	genome.wustl.edu	37	chr3	129007712	129007712	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcaggatgcagactcatctGagcgtatcattgctcccatg	11	11	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	129007712	129007712	G	C	SNP	C3orf37	ENST00000383463	human	ensembl	69_37n	1	known	missense	c.199	p.E67Q	1.000	pfam_DUF159	pfam_DUF159	-	no_errors	C3orf37	HGNC	ENSG00000183624	39	0	0	34	28	45.16	-	-	-	C	129007712	G	C	129007712	3	2	679	1	0	0	0	0	1	0	0	0	2247	1291	45	2	205	2	C3orf37	3	129007712	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4842090	129007712	69014718	229	59130										
IFT122	0	genome.wustl.edu	37	chr3	129185735	129185735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actacttactgtctacagccGatgggagagtttctggatga	11	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	129185735	129185735	G	A	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	missense	c.719	p.R240Q	0.995	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	108	0	0	67	51	43.22	-	-	-	A	129185735	G	A	129185735	3	1	679	1	0	0	0	0	1	0	0	0	7609	1058	37	1	753	1	IFT122	3	129185735	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	178023	129185735	68836695	230	59131										
COL6A5	0	genome.wustl.edu	37	chr3	130095171	130095171	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccattcgtgaaaacgttcatCaacaaaatgatcaacagtct	5	10	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	130095171	130095171	C	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.159	p.I53M	0.128	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	77	0	0	83	34	29.06	-	-	-	G	130095171	C	G	130095171	3	3	679	1	0	0	0	0	1	0	0	0	3732	816	29	2	165	2	COL6A5	3	130095171	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	909436	130095171	67927259	231	59132										
ATP2C1	0	genome.wustl.edu	37	chr3	130686192	130686192	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggcgggctgtgtgtgcaatGatgctgtaattagaaacaat	13	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	130686192	130686192	G	C	SNP	ATP2C1	ENST00000393221	human	ensembl	69_37n	1	known	missense	c.1339	p.D447H	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2C1	HGNC	ENSG00000017260	138	0	0	87	69	44.23	-	-	-	C	130686192	G	C	130686192	3	2	679	1	0	0	0	0	1	0	0	0	1147	1290	45	2	1295	2	ATP2C1	3	130686192	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	591021	130686192	67336238	232	59133										
STAG1	0	genome.wustl.edu	37	chr3	136196200	136196200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggcatcactatacattttCatccatactccaatttcttc	2	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	136196200	136196200	C	T	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.957	p.M319I	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	84	0	0	144	65	31.1	-	-	-	T	136196200	C	T	136196200	3	4	679	1	0	0	0	0	1	0	0	0	15333	826	29	2	2919	2	STAG1	3	136196200	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5510008	136196200	61826230	233	59134										
STAG1	0	genome.wustl.edu	37	chr3	136196234	136196234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcttcaatacaaatggctCtaatctcagcaatagcatca	4	10	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	136196234	136196234	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.923	p.R308T	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	66	0	0	111	69	38.33	-	-	-	G	136196234	C	G	136196234	3	3	679	1	0	0	0	0	1	0	0	0	15333	913	32	2	2953	2	STAG1	3	136196234	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	34	136196234	61826196	234	59135										
TSC22D2	0	genome.wustl.edu	37	chr3	150127629	150127629	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtagttcccgttttcgcgtGatcaagctggaccacgggag	13	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	150127629	150127629	G	A	SNP	TSC22D2	ENST00000361875	human	ensembl	69_37n	1	known	silent	c.492	p.V164	0.997	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428	8	0	0	8	5	38.46	-	-	-	A	150127629	G	A	150127629	2	1	679	1	0	0	0	0	0	0	0	1	16704	1277	45	2		2	TSC22D2	3	150127629	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	13931395	150127629	47894801	235	59136										
B3GALNT1	0	genome.wustl.edu	37	chr3	160804565	160804565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagcagctcagaagcacgcGagccgaaggttctggaagag	14	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	160804565	160804565	G	A	SNP	B3GALNT1	ENST00000460353	human	ensembl	69_37n	-1	putative	missense	c.338	p.S113L	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	B3GALNT1	HGNC	ENSG00000169255	10	0	0	6	10	62.5	-	-	-	A	160804565	G	A	160804565	3	1	679	1	0	0	0	0	1	0	0	0	1249	1073	37	1		1	B3GALNT1	3	160804565	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	10676936	160804565	37217865	236	59137										
MECOM	0	genome.wustl.edu	37	chr3	168845834	168845834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggtcacagtcttcgcagcGatattgccgttcttctgtga	10	11	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	168845834	168845834	G	A	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.628	p.R210C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	50	0	0	35	17	32.69	-	-	-	A	168845834	G	A	168845834	3	1	679	1	0	0	0	0	1	0	0	0	9493	1058	37	1	3146	1	MECOM	3	168845834	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8041269	168845834	29176596	237	59138										
TNIK	0	genome.wustl.edu	37	chr3	170879087	170879087	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcctgagtcattctcctcctCttcttcctcacttccactgt	3	17	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	170879087	170879087	C	G	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.988	p.E330Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	165	0	0	166	96	36.64	-	-	-	G	170879087	C	G	170879087	3	3	679	1	0	0	0	0	1	0	0	0	16408	922	32	2	3186	2	TNIK	3	170879087	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2033253	170879087	27143343	238	59139										
MRPL47	0	genome.wustl.edu	37	chr3	179319550	179319550	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaatcttcattacttttgttCcttagttgctgacaggtcca	6	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	179319550	179319550	C	G	SNP	MRPL47	ENST00000476781	human	ensembl	69_37n	-1	known	missense	c.273	p.R91S	1.000	pfam_Ribosomal_L47_mit	pfam_Ribosomal_L47_mit	-	no_errors	MRPL47	HGNC	ENSG00000136522	111	0	0	116	48	29.27	-	-	-	G	179319550	C	G	179319550	3	3	679	1	0	0	0	0	1	0	0	0	9883	854	30	2	499	2	MRPL47	3	179319550	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8440463	179319550	18702880	239	59140										
CCDC39	0	genome.wustl.edu	37	chr3	180372690	180372690	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttccaaaaacttgatcttttCtttaaccaaattttcttttt	1	8	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	180372690	180372690	C	T	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	missense	c.790	p.E264K	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	190	0	0	225	121	34.97	-	-	-	T	180372690	C	T	180372690	3	4	679	1	0	0	0	0	1	0	0	0	2837	922	32	2	2091	2	CCDC39	3	180372690	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1053140	180372690	17649740	240	59141										
MCF2L2	0	genome.wustl.edu	37	chr3	182994746	182994746	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttcaaagatttcttcactCtgaagtgaaagaaattttgg	7	6	4	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	182994746	182994746	C	G	SNP	MCF2L2	ENST00000328913	human	ensembl	69_37n	-1	known	splice_site	c.1777-1	e15-1	1.000	-	-	-	no_errors	MCF2L2	HGNC	ENSG00000053524	10	0	0	5	4	44.44	-	-	-	G	182994746	C	G	182994746	5	3	679	1	0	0	0	0	0	0	1	0	9451	927	32	2	1632	2	MCF2L2	3	182994746	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2622056	182994746	15027684	241	59142										
IGF2BP2	0	genome.wustl.edu	37	chr3	185542725	185542725	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgacggcggggctcaggttCccgatgtaaagcttgttcat	14	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	185542725	185542725	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	silent	c.24	p.G8	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	8	0	0	13	5	27.78	-	-	-	T	185542725	C	T	185542725	2	4	679	1	0	0	0	0	0	0	0	1	7628	842	30	2		2	IGF2BP2	3	185542725	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2547979	185542725	12479705	242	59143										
MUC4	0	genome.wustl.edu	37	chr3	195508239	195508239	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaggaagaggcatggtgtcAcctgtggatactgaggaagt	15	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	195508239	195508239	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.10212	p.G3404	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	13	0	0	258	111	30	-	-	-	G	195508239	A	G	195508239	2	3	679	1	0	0	0	0	0	0	0	1	10050	146	6	5		5	MUC4	3	195508239	Silent	SNP	A	TCGA-D8-A1JA-01A-11D-A13L-09	9965514	195508239	2514191	243	59144										
LRCH3	0	genome.wustl.edu	37	chr3	197544069	197544069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaaccaactgtcaacattgCcggtacacttgtgtaatttg	9	9	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	3	197544069	197544069	C	T	SNP	LRCH3	ENST00000438796	human	ensembl	69_37n	1	known	missense	c.430	p.P144S	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	79	0	0	56	38	40.43	-	-	-	T	197544069	C	T	197544069	3	4	679	1	0	0	0	0	1	0	0	0	9000	739	26	4	440	4	LRCH3	3	197544069	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2035830	197544069	478361	244	59145										
NOP14	0	genome.wustl.edu	37	chr4	2955258	2955258	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttgggtttttcctttttgtCtctgttctctgacttgggag	10	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	2955258	2955258	C	G	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	missense	c.727	p.D243H	0.018	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	92	0	0	59	96	61.94	-	-	-	G	2955258	C	G	2955258	3	3	679	1	0	0	0	0	1	0	0	0	10608	913	32	2	1902	2	NOP14	4	2955258	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		2955258	188199018	245	59146										
ARAP2	0	genome.wustl.edu	37	chr4	36069774	36069774	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgttttcggggtcgatttcGaagtttatcgtccttgtgct	11	7	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	36069774	36069774	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	nonsense	c.4870	p.R1624*	0.990	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	100	0	0	19	39	67.24	-	-	-	A	36069774	G	A	36069774	4	1	679	1	0	0	0	0	0	1	0	0	841	1066	37	1	248	1	ARAP2	4	36069774	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	33114516	36069774	155084502	246	59147										
SLC30A9	0	genome.wustl.edu	37	chr4	42020150	42020150	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaggtataggcacagaactCaaagctccacttaagcaaga	9	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	42020150	42020150	C	G	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	1	known	silent	c.297	p.L99	0.997	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	31	0	0	10	20	66.67	-	-	-	G	42020150	C	G	42020150	2	3	679	1	0	0	0	0	0	0	0	1	14651	813	29	2		2	SLC30A9	4	42020150	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5950376	42020150	149134126	247	59148										
GABRG1	0	genome.wustl.edu	37	chr4	46043085	46043085	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaatattctagaataagagtCaattttggcaatgcgtatgt	8	4	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	46043085	46043085	C	T	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.1318	p.D440N	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	46	0	0	37	48	56.47	-	-	-	T	46043085	C	T	46043085	3	4	679	1	0	0	0	0	1	0	0	0	6220	826	29	2	83	2	GABRG1	4	46043085	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4022935	46043085	145111191	248	59149										
GABRA4	0	genome.wustl.edu	37	chr4	46930718	46930718	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctgttgccaacatcagattCagagtgaaccaaagcatttg	8	9	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	46930718	46930718	C	T	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1189	p.E397K	0.670	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	31	0	0	21	17	44.74	-	-	-	T	46930718	C	T	46930718	3	4	679	1	0	0	0	0	1	0	0	0	6212	835	29	2	479	2	GABRA4	4	46930718	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	887633	46930718	144223558	249	59150										
GABRB1	0	genome.wustl.edu	37	chr4	47405379	47405379	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattttactggaatggaggaGaaggggcagtcactggtgtt	15	4	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	47405379	47405379	G	A	SNP	GABRB1	ENST00000295454	human	ensembl	69_37n	1	known	missense	c.589	p.E197K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	118	0	0	157	90	36.29	-	-	-	A	47405379	G	A	47405379	3	1	679	1	0	0	0	0	1	0	0	0	6215	943	33	2	611	2	GABRB1	4	47405379	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	474661	47405379	143748897	250	59151										
TXK	0	genome.wustl.edu	37	chr4	48096222	48096222	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttatggcagcctccgtacttCtacaatcaagaaaatgtgaa	7	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	48096222	48096222	C	T	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	splice_site	c.582-1	e8-1	0.813	-	-	-	no_errors	TXK	HGNC	ENSG00000074966	95	0	0	40	32	44.44	-	-	-	T	48096222	C	T	48096222	5	4	679	1	0	0	0	0	0	0	1	0	16883	927	32	2	1034	2	TXK	4	48096222	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	690843	48096222	143058054	251	59152										
CWH43	0	genome.wustl.edu	37	chr4	48988454	48988454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctcgccgcggcgatgccctCgctgtggagagaaatcctct	12	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	48988454	48988454	C	T	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	missense	c.8	p.S3L	0.006	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	8	0	0	6	5	45.45	-	-	-	T	48988454	C	T	48988454	3	4	679	1	0	0	0	0	1	0	0	0	4104	893	31	1	10	1	CWH43	4	48988454	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	892232	48988454	142165822	252	59153										
CWH43	0	genome.wustl.edu	37	chr4	49009315	49009315	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacagttctaaagtgcttttCagaaagagtgaaaaatacat	7	5	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	49009315	49009315	C	T	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	silent	c.1158	p.F386	0.993	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	91	0	0	67	43	39.09	-	-	-	T	49009315	C	T	49009315	2	4	679	1	0	0	0	0	0	0	0	1	4104	825	29	2		2	CWH43	4	49009315	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	20861	49009315	142144961	253	59154										
TMEM165	0	genome.wustl.edu	37	chr4	56291562	56291562	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgacaatcataggaggcatCgtttttttggcgtttgcatt	11	6	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	56291562	56291562	C	T	SNP	TMEM165	ENST00000381334	human	ensembl	69_37n	1	known	silent	c.918	p.I306	1.000	pfam_UPF0016	pfam_UPF0016	-	no_errors	TMEM165	HGNC	ENSG00000134851	213	0	0	232	146	38.62	-	-	-	T	56291562	C	T	56291562	2	4	679	1	0	0	0	0	0	0	0	1	16175	874	31	1		1	TMEM165	4	56291562	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7282247	56291562	134862714	254	59155										
PPAT	0	genome.wustl.edu	37	chr4	57269520	57269520	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacgccagtaactgggtaatCatttcactatcagaacttgt	7	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	57269520	57269520	C	T	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	missense	c.450	p.M150I	1.000	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	45	0	0	41	23	35.94	-	-	-	T	57269520	C	T	57269520	3	4	679	1	0	0	0	0	1	0	0	0	12375	826	29	2	1135	2	PPAT	4	57269520	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	977958	57269520	133884756	255	59156										
REST	0	genome.wustl.edu	37	chr4	57796138	57796138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actgtgattacaaaacagcaGatagaagcaacttcaaaaaa	6	7	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	57796138	57796138	G	C	SNP	REST	ENST00000309042	human	ensembl	69_37n	1	known	missense	c.1114	p.D372H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093	47	0	0	34	35	49.3	-	-	-	C	57796138	G	C	57796138	3	2	679	1	0	0	0	0	1	0	0	0	13317	942	33	2	1124	2	REST	4	57796138	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	526618	57796138	133358138	256	59157										
UGT2B17	0	genome.wustl.edu	37	chr4	69417578	69417578	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggtaaccacttatacagtcGagtattggaacctaaagtat	9	7	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	69417578	69417578	G	C	SNP	UGT2B17	ENST00000317746	human	ensembl	69_37n	-1	known	missense	c.1057	p.R353G	0.058	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888	40	0	0	17	57	77.03	-	-	-	C	69417578	G	C	69417578	3	2	679	1	0	0	0	0	1	0	0	0	17056	1066	37	3	547	3	UGT2B17	4	69417578	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	11621440	69417578	121736698	257	59158										
SDAD1	0	genome.wustl.edu	37	chr4	76878805	76878805	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttaaaactcggctagtgctGatggctgcagctttggcctt	12	9	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	76878805	76878805	G	A	SNP	SDAD1	ENST00000356260	human	ensembl	69_37n	-1	known	silent	c.1635	p.I545	0.992	pfam_SDA1	pfam_SDA1,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	150	0	0	69	112	61.88	-	-	-	A	76878805	G	A	76878805	2	1	679	1	0	0	0	0	0	0	0	1	14038	1280	45	2		2	SDAD1	4	76878805	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7461227	76878805	114275471	258	59159										
FRAS1	0	genome.wustl.edu	37	chr4	79359817	79359817	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctcaggatctgaggtggaaGagctctcagaagtttccaat	11	8	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	79359817	79359817	G	C	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.5311	p.E1771Q	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	45	0	0	53	42	43.75	-	-	-	C	79359817	G	C	79359817	3	2	679	1	0	0	0	0	1	0	0	0	6090	943	33	2	5465	2	FRAS1	4	79359817	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2481012	79359817	111794459	259	59160										
ARHGAP24	0	genome.wustl.edu	37	chr4	86921698	86921698	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catgatgaactggatcaggaGaggaaaaagttcacaatgat	11	5	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	86921698	86921698	G	C	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	missense	c.2070	p.E690D	0.992	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	55	0	0	45	70	60.87	-	-	-	C	86921698	G	C	86921698	3	2	679	1	0	0	0	0	1	0	0	0	875	933	33	2	2220	2	ARHGAP24	4	86921698	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7561881	86921698	104232578	260	59161										
ADH6	0	genome.wustl.edu	37	chr4	100126152	100126152	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagagtatgagtaattagtgGatctagattcaacttctctg	9	6	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	100126152	100126152	G	C	SNP	ADH6	ENST00000394899	human	ensembl	69_37n	-1	known	missense	c.1033	p.P345A	0.007	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955	111	0	0	146	52	26.26	-	-	-	C	100126152	G	C	100126152	3	2	679	1	0	0	0	0	1	0	0	0	312	1174	41	2	106	2	ADH6	4	100126152	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	13204454	100126152	91028124	261	59162										
C4orf17	0	genome.wustl.edu	37	chr4	100434338	100434338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctagtcaggcacacccctCatcccagaagagtctgccac	7	16	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	100434338	100434338	C	G	SNP	C4orf17	ENST00000326581	human	ensembl	69_37n	1	known	missense	c.100	p.H34D	1.000	NULL	NULL	-	no_errors	C4orf17	HGNC	ENSG00000138813	47	0	0	16	31	65.96	-	-	-	G	100434338	C	G	100434338	3	3	679	1	0	0	0	0	1	0	0	0	2273	826	29	2	102	2	C4orf17	4	100434338	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	308186	100434338	90719938	262	59163										
MANBA	0	genome.wustl.edu	37	chr4	103578871	103578871	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actgaaggacggccaggactGatatccatattcagatgcaa	10	9	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	103578871	103578871	G	A	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	nonsense	c.1672	p.Q558*	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	76	0	0	43	66	60.55	-	-	-	A	103578871	G	A	103578871	4	1	679	1	0	0	0	0	0	1	0	0	9290	1299	45	2	991	2	MANBA	4	103578871	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3144533	103578871	87575405	263	59164										
LRIT3	0	genome.wustl.edu	37	chr4	110772999	110772999	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatgaggcgctcaggtatctGaagaaccttgcctacttgga	11	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	110772999	110772999	G	C	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	1	known	silent	c.321	p.L107	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	54	0	0	50	22	30.56	-	-	-	C	110772999	G	C	110772999	2	2	679	1	0	0	0	0	0	0	0	1	9015	1277	45	2		2	LRIT3	4	110772999	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7194128	110772999	80381277	264	59165										
ANK2	0	genome.wustl.edu	37	chr4	114158757	114158757	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaacaacactgcttcagatGatggtgaataggacaactga	9	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	114158757	114158757	G	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.672	p.M224I	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	97	0	0	134	103	43.46	-	-	-	C	114158757	G	C	114158757	3	2	679	1	0	0	0	0	1	0	0	0	621	1290	45	2	723	2	ANK2	4	114158757	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3385758	114158757	76995519	265	59166										
ANK2	0	genome.wustl.edu	37	chr4	114274431	114274431	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagagccttttgaaatcgttGaaagagttaaagaggactta	11	4	0	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	114274431	114274431	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.4657	p.E1553K	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	35	0	0	24	7	22.58	-	-	-	A	114274431	G	A	114274431	3	1	679	1	0	0	0	0	1	0	0	0	621	1291	45	2	4872	2	ANK2	4	114274431	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	115674	114274431	76879845	266	59167										
HSPA4L	0	genome.wustl.edu	37	chr4	128725013	128725013	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catgaatgaccttgatgtttCtagtaaaatgaacaggtacc	8	7	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	128725013	128725013	C	T	SNP	HSPA4L	ENST00000439123	human	ensembl	69_37n	1	known	missense	c.986	p.S329F	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070	51	0	0	54	22	28.95	-	-	-	T	128725013	C	T	128725013	3	4	679	1	0	0	0	0	1	0	0	0	7466	913	32	2	919	2	HSPA4L	4	128725013	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	14450582	128725013	62429263	267	59168										
PCDH10	0	genome.wustl.edu	37	chr4	134073840	134073840	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttcgcggagtacggacactGagcacaacccctgcggggcc	13	15	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	134073840	134073840	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.2545	p.E849K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	38	0	0	11	29	72.5	-	-	-	A	134073840	G	A	134073840	3	1	679	1	0	0	0	0	1	0	0	0	11580	1291	45	2	2547	2	PCDH10	4	134073840	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5348827	134073840	57080436	268	59169										
OTUD4	0	genome.wustl.edu	37	chr4	146059276	146059276	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaattctcctttttcatcaGagggcaggacaatattctgc	7	11	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	146059276	146059276	G	A	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.2651	p.S884F	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	27	0	0	1	13	92.86	-	-	-	A	146059276	G	A	146059276	3	1	679	1	0	0	0	0	1	0	0	0	11387	942	33	2	697	2	OTUD4	4	146059276	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	11985436	146059276	45095000	269	59170										
ARHGAP10	0	genome.wustl.edu	37	chr4	148796228	148796228	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaagagctcatgaacaaaatCagacagaatcccaaggacca	8	10	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	148796228	148796228	C	G	SNP	ARHGAP10	ENST00000336498	human	ensembl	69_37n	1	known	missense	c.759	p.I253M	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP10	HGNC	ENSG00000071205	128	0	0	24	35	59.32	-	-	-	G	148796228	C	G	148796228	3	3	679	1	0	0	0	0	1	0	0	0	864	816	29	2	789	2	ARHGAP10	4	148796228	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2736952	148796228	42358048	270	59171										
MAP9	0	genome.wustl.edu	37	chr4	156281331	156281331	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacaaatacctttgaagatgCtgttgcactggtagatatta	8	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	156281331	156281331	C	T	SNP	MAP9	ENST00000311277	human	ensembl	69_37n	-1	known	missense	c.1039	p.A347T	0.001	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	103	0	0	24	40	62.5	-	-	-	T	156281331	C	T	156281331	3	4	679	1	0	0	0	0	1	0	0	0	9341	797	28	4	936	4	MAP9	4	156281331	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7485103	156281331	34872945	271	59172										
ODZ3	0	genome.wustl.edu	37	chr4	183713521	183713521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caccatgcccagtgtggctcGccacaccatgcagaccatcc	8	18	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	183713521	183713521	G	C	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.5696	p.R1899P	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	45	0	0	8	4	33.33	-	-	-	C	183713521	G	C	183713521	3	2	679	1	0	0	0	0	1	0	0	0	10909	1087	38	3	5794	3	ODZ3	4	183713521	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	27432190	183713521	7440755	272	59173										
SNX25	0	genome.wustl.edu	37	chr4	186260571	186260571	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatgaaataatcctaatagaGaaagaacgcacagaccttca	7	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	4	186260571	186260571	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	silent	c.1461	p.E487	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	33	0	0	8	22	73.33	-	-	-	A	186260571	G	A	186260571	2	1	679	1	0	0	0	0	0	0	0	1	14985	933	33	2		2	SNX25	4	186260571	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2547050	186260571	4893705	273	59174										
KIAA0947	0	genome.wustl.edu	37	chr5	5464767	5464767	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acatcctcaaagggaatattCaactcacacgaggtccgcct	7	13	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	5464767	5464767	C	G	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.5320	p.Q1774E	0.998	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	37	0	0	22	11	33.33	-	-	-	G	5464767	C	G	5464767	3	3	679	1	0	0	0	0	1	0	0	0	8254	827	29	2	5370	2	KIAA0947	5	5464767	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		5464767	175450493	274	59175										
MTRR	0	genome.wustl.edu	37	chr5	7883323	7883323	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtttttcaagtgccaatttCaaaggcagttcaacttacta	6	8	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	7883323	7883323	C	G	SNP	MTRR	ENST00000264668	human	ensembl	69_37n	1	known	nonsense	c.917	p.S306*	0.951	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	MTRR	HGNC	ENSG00000124275	89	0	0	50	28	35.9	-	-	-	G	7883323	C	G	7883323	4	3	679	1	0	0	0	0	0	1	0	0	10033	838	29	2	939	2	MTRR	5	7883323	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2418556	7883323	173031937	275	59176										
MYO10	0	genome.wustl.edu	37	chr5	16670782	16670782	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaggagacttcttccttaatCcacatgtccagcatctgctc	7	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	16670782	16670782	C	G	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.5736	p.W1912C	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	38	0	0	38	20	34.48	-	-	-	G	16670782	C	G	16670782	3	3	679	1	0	0	0	0	1	0	0	0	10134	856	30	2	452	2	MYO10	5	16670782	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8787459	16670782	164244478	276	59177										
CDH12	0	genome.wustl.edu	37	chr5	21752076	21752076	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcattttcctgtagcctttGatgaatgaaatcccttatgt	6	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	21752076	21752076	G	A	SNP	CDH12	ENST00000382254	human	ensembl	69_37n	-1	known	nonsense	c.2155	p.Q719*	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	272	0	0	190	127	39.94	-	-	-	A	21752076	G	A	21752076	4	1	679	1	0	0	0	0	0	1	0	0	3127	1299	45	2	233	2	CDH12	5	21752076	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5081294	21752076	159163184	277	59178										
RICTOR	0	genome.wustl.edu	37	chr5	38957828	38957828	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaatccttttggaatggagaGaaatctgcaaattaaaacaa	7	5	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	38957828	38957828	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	missense	c.2425	p.L809F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	50	0	0	81	47	36.72	-	-	-	A	38957828	G	A	38957828	3	1	679	1	0	0	0	0	1	0	0	0	13442	942	33	2	2757	2	RICTOR	5	38957828	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	17205752	38957828	141957432	278	59179										
FGF10	0	genome.wustl.edu	37	chr5	44305146	44305146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagcagaggtgtttttccttCgtgttttctgtcctctcctt	9	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	44305146	44305146	C	T	SNP	FGF10	ENST00000264664	human	ensembl	69_37n	-1	known	missense	c.578	p.R193Q	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF10	HGNC	ENSG00000070193	199	0	0	168	86	33.86	-	-	-	T	44305146	C	T	44305146	3	4	679	1	0	0	0	0	1	0	0	0	5885	884	31	1	52	1	FGF10	5	44305146	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5347318	44305146	136610114	279	59180										
CDK7	0	genome.wustl.edu	37	chr5	68568719	68568719	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttacaaaattatttttacagGacatgtgtagtcttccagat	6	6	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	68568719	68568719	G	C	SNP	CDK7	ENST00000256443	human	ensembl	69_37n	1	known	missense	c.715	p.D239H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK7	HGNC	ENSG00000134058	64	0	0	21	21	50	-	-	-	C	68568719	G	C	68568719	3	2	679	1	0	0	0	0	1	0	0	0	3178	1188	41	2	753	2	CDK7	5	68568719	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	24263573	68568719	112346541	280	59181										
HMGCR	0	genome.wustl.edu	37	chr5	74650360	74650360	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttccttagtgatgctgagatCatccagttagtcaatgctaa	8	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	74650360	74650360	C	T	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	silent	c.1401	p.I467	1.000	superfamily_HMG_CoA_Rdtase_sub-bd,pfscan_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	48	0	0	19	25	56.82	-	-	-	T	74650360	C	T	74650360	2	4	679	1	0	0	0	0	0	0	0	1	7282	816	29	2		2	HMGCR	5	74650360	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6081641	74650360	106264900	281	59182										
VCAN	0	genome.wustl.edu	37	chr5	82834656	82834656	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagagaatactcaacagtgtCtcatcccatagcaaaagaag	7	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	82834656	82834656	C	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.5834	p.S1945F	0.449	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	47	0	0	12	18	60	-	-	-	T	82834656	C	T	82834656	3	4	679	1	0	0	0	0	1	0	0	0	17235	913	32	2	5860	2	VCAN	5	82834656	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8184296	82834656	98080604	282	59183										
VCAN	0	genome.wustl.edu	37	chr5	82836059	82836059	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atggttttgaaatggccaaaGaatttgttacatcagcacca	8	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	82836059	82836059	G	A	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.7237	p.E2413K	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	44	0	0	15	18	54.55	-	-	-	A	82836059	G	A	82836059	3	1	679	1	0	0	0	0	1	0	0	0	17235	943	33	2	7263	2	VCAN	5	82836059	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1403	82836059	98079201	283	59184										
CETN3	0	genome.wustl.edu	37	chr5	89705477	89705479	+	Frame_Shift_Del	DEL	ATT	ATT	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccgacctcagagctaaactcAttatctcttcgcacagagac							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	89705477	89705479	ATT	-	DEL	CETN3	ENST00000283122	human	ensembl	69_37n	-1	known	frame_shift_del	c.2_1	p.M1fs	1.000:1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CETN3	HGNC	ENSG00000153140	34	0	0	22	10	30.3	-	-	-	-	89705479	ATT	-	89705477	7	5	679	1	0	1	0	1	0	0	0	0	3305	217	8	0	521	0	CETN3	5	89705477	Frame_Shift_Del	DEL	ATT	TCGA-D8-A1JA-01A-11D-A13L-09	6869418	89705477	91209783	284	59185										
LYSMD3	0	genome.wustl.edu	37	chr5	89821016	89821016	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcatcctcctccaaaatatCactgtctgaacaatttccaa	3	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	89821016	89821016	C	G	SNP	LYSMD3	ENST00000315948	human	ensembl	69_37n	-1	known	missense	c.91	p.D31H	0.997	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD3	HGNC	ENSG00000176018	77	0	0	146	67	31.46	-	-	-	G	89821016	C	G	89821016	3	3	679	1	0	0	0	0	1	0	0	0	9193	826	29	2	837	2	LYSMD3	5	89821016	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	115539	89821016	91094244	285	59186										
SLCO4C1	0	genome.wustl.edu	37	chr5	101572691	101572691	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaaaagattgcaaatccattGaagaacatggtgataacttt	7	5	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	101572691	101572691	G	A	SNP	SLCO4C1	ENST00000310954	human	ensembl	69_37n	-1	known	silent	c.2046	p.F682	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	61	0	0	51	48	48.48	-	-	-	A	101572691	G	A	101572691	2	1	679	1	0	0	0	0	0	0	0	1	14819	1281	45	2		2	SLCO4C1	5	101572691	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	11751675	101572691	79342569	286	59187										
SEMA6A	0	genome.wustl.edu	37	chr5	115803422	115803422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatctgatgtggttgtgctgGgcaagagggaactggaatgc	16	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	115803422	115803422	G	T	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.1802	p.P601H	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	144	0	0	51	41	44.57	-	-	-	T	115803422	G	T	115803422	3	4	679	1	0	0	0	0	1	0	0	0	14127	1232	43	4	1349	4	SEMA6A	5	115803422	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	14230731	115803422	65111838	287	59188										
LEAP2	0	genome.wustl.edu	37	chr5	132209725	132209725	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttggagaggggtttccctCaggcctattggagcctcctg	13	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	132209725	132209725	C	T	SNP	LEAP2	ENST00000296877	human	ensembl	69_37n	1	known	silent	c.141	p.L47	0.996	pfam_LEAP-2	pfam_LEAP-2	-	no_errors	LEAP2	HGNC	ENSG00000164406	32	0	0	8	22	73.33	-	-	-	T	132209725	C	T	132209725	2	4	679	1	0	0	0	0	0	0	0	1	8765	813	29	2		2	LEAP2	5	132209725	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	16406303	132209725	48705535	288	59189										
KDM3B	0	genome.wustl.edu	37	chr5	137759772	137759772	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtgtctggcagggagtgaaGagcaaggccagcctacccaa	14	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	137759772	137759772	G	C	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.3981	p.K1327N	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	17	0	0	32	17	34.69	-	-	-	C	137759772	G	C	137759772	3	2	679	1	0	0	0	0	1	0	0	0	8181	933	33	2	4043	2	KDM3B	5	137759772	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5550047	137759772	43155488	289	59190										
ANKHD1	0	genome.wustl.edu	37	chr5	139907821	139907821	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aactaatcaatgcactcattCaagatcctgctaaggaactg	6	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	139907821	139907821	C	G	SNP	ANKHD1	ENST00000435794	human	ensembl	69_37n	1	novel	nonsense	c.761	p.S254*	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKHD1	HGNC	ENSG00000131503	39	0	0	41	28	40.58	-	-	-	G	139907821	C	G	139907821	4	3	679	1	0	0	0	0	0	1	0	0	628	827	29	2	5510	2	ANKHD1	5	139907821	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2148049	139907821	41007439	290	59191										
PCDHB15	0	genome.wustl.edu	37	chr5	140626451	140626451	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaaggctgaaaaccgagcaGagcataaccgtgctggtgtc	12	11	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	140626451	140626451	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	1	known	silent	c.1305	p.Q435	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	42	0	0	53	39	42.39	-	-	-	A	140626451	G	A	140626451	2	1	679	1	0	0	0	0	0	0	0	1	11613	933	33	2		2	PCDHB15	5	140626451	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	718630	140626451	40288809	291	59192										
PCDHGA7	0	genome.wustl.edu	37	chr5	140762932	140762932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggttcggtttccgttaagcGaggctggggatccagatgtg	17	7	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	140762932	140762932	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	missense	c.466	p.E156K	0.681	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	10	0	0	19	19	50	-	-	-	A	140762932	G	A	140762932	3	1	679	1	0	0	0	0	1	0	0	0	11632	1059	37	1	468	1	PCDHGA7	5	140762932	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	136481	140762932	40152328	292	59193										
ARAP3	0	genome.wustl.edu	37	chr5	141049551	141049551	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaatatcctggggctgtatGaggctgaggggttcagggct	16	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	141049551	141049551	G	C	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	silent	c.2187	p.L729	0.991	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	126	0	0	47	21	30.88	-	-	-	C	141049551	G	C	141049551	2	2	679	1	0	0	0	0	0	0	0	1	842	1277	45	2		2	ARAP3	5	141049551	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	286619	141049551	39865709	293	59194										
PCDH12	0	genome.wustl.edu	37	chr5	141337395	141337395	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggccccaaaagccccagcaGaagttgcagaagttgcatca	10	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	141337395	141337395	G	C	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.22	p.L8V	0.724	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	34	0	0	13	10	43.48	-	-	-	C	141337395	G	C	141337395	3	2	679	1	0	0	0	0	1	0	0	0	11583	933	33	2	3548	2	PCDH12	5	141337395	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	287844	141337395	39577865	294	59195										
NDST1	0	genome.wustl.edu	37	chr5	149924919	149924919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccaacaccacctccgacttCtactttgagaaaagcgccaa	5	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	149924919	149924919	C	G	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	missense	c.2016	p.F672L	1.000	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	25	0	0	42	14	24.56	-	-	-	G	149924919	C	G	149924919	3	3	679	1	0	0	0	0	1	0	0	0	10327	912	32	2	2054	2	NDST1	5	149924919	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8587524	149924919	30990341	295	59196										
DCTN4	0	genome.wustl.edu	37	chr5	150095128	150095128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcacaaaaagatcactcactCaggatcgtcctgaaagtctt	6	11	5	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	150095128	150095128	C	G	SNP	DCTN4	ENST00000446090	human	ensembl	69_37n	-1	known	missense	c.1189	p.D397H	1.000	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912	62	0	0	49	28	35.9	-	-	-	G	150095128	C	G	150095128	3	3	679	1	0	0	0	0	1	0	0	0	4340	840	29	2	222	2	DCTN4	5	150095128	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	170209	150095128	30820132	296	59197										
GABRG2	0	genome.wustl.edu	37	chr5	161524772	161524772	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggattccagacactttcttCagaaattccaaaaaagctga	6	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	161524772	161524772	C	T	SNP	GABRG2	ENST00000356592	human	ensembl	69_37n	1	known	silent	c.456	p.F152	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	73	0	0	62	42	40.38	-	-	-	T	161524772	C	T	161524772	2	4	679	1	0	0	0	0	0	0	0	1	6221	825	29	2		2	GABRG2	5	161524772	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	11429644	161524772	19390488	297	59198										
LMAN2	0	genome.wustl.edu	37	chr5	176764139	176764139	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggcccggcccactcaccaGacaggtcgccggtgccggcg	14	18	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	176764139	176764139	G	A	SNP	LMAN2	ENST00000303127	human	ensembl	69_37n	-1	known	missense	c.788	p.S263F	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	pfam_Lectin_leg,superfamily_ConA-like_lec_gl	-	no_errors	LMAN2	HGNC	ENSG00000169223	27	0	0	17	8	32	-	-	-	A	176764139	G	A	176764139	3	1	679	1	0	0	0	0	1	0	0	0	8894	942	33	2	294	2	LMAN2	5	176764139	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	15239367	176764139	4151121	298	59199										
GRM6	0	genome.wustl.edu	37	chr5	178418435	178418435	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actgtcccacctgatgtcatCctcattggcaaagatgatga	8	11	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	178418435	178418435	C	G	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	missense	c.847	p.D283H	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	52	0	0	40	23	36.51	-	-	-	G	178418435	C	G	178418435	3	3	679	1	0	0	0	0	1	0	0	0	6852	855	30	2	1818	2	GRM6	5	178418435	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1654296	178418435	2496825	299	59200										
GFPT2	0	genome.wustl.edu	37	chr5	179763566	179763566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gacttcgtgattattcccatCgatcgccacacctgtgatgt	8	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	179763566	179763566	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.127	p.D43N	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	56	0	0	114	60	34.48	-	-	-	T	179763566	C	T	179763566	3	4	679	1	0	0	0	0	1	0	0	0	6398	884	31	1	1989	1	GFPT2	5	179763566	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1345131	179763566	1151694	300	59201										
FLT4	0	genome.wustl.edu	37	chr5	180049834	180049834	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctggatcaccagcttgctCacagtctgggagagcacagg	12	11	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	5	180049834	180049834	C	T	SNP	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	silent	c.1554	p.V518	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	18	0	0	37	23	38.33	-	-	-	T	180049834	C	T	180049834	2	4	679	1	0	0	0	0	0	0	0	1	5990	813	29	2		2	FLT4	5	180049834	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	286268	180049834	865426	301	59202										
EXOC2	0	genome.wustl.edu	37	chr6	491139	491139	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acttacttgctttcgggtgtCaggtaaacagccacagtgtc	10	10	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	491139	491139	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	silent	c.2607	p.L869	0.997	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	63	0	0	37	25	40.32	-	-	-	T	491139	C	T	491139	2	4	679	1	0	0	0	0	0	0	0	1	5338	813	29	2		2	EXOC2	6	491139	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		491139	170623928	302	59203										
EXOC2	0	genome.wustl.edu	37	chr6	637808	637808	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcacaagggggggttgtcgtGatcgagacattgtgctttgt	15	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	637808	637808	G	C	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	nonsense	c.11	p.S4*	0.038	superfamily_Ig_E-set	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	34	0	0	12	10	45.45	-	-	-	C	637808	G	C	637808	4	2	679	1	0	0	0	0	0	1	0	0	5338	1294	45	2	2871	2	EXOC2	6	637808	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	146669	637808	170477259	303	59204										
HUS1B	0	genome.wustl.edu	37	chr6	656149	656149	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgaagagagacatcttcttGaaccaaaacaagctgaagaa	8	8	2	6			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	656149	656149	G	C	SNP	HUS1B	ENST00000380907	human	ensembl	69_37n	-1	known	missense	c.796	p.Q266E	0.940	pfam_Hus1,pirsf_Cell_cycle_HUS1	pfam_Hus1,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996	70	0	0	30	23	43.4	-	-	-	C	656149	G	C	656149	3	2	679	1	0	0	0	0	1	0	0	0	7514	1299	45	2	44	2	HUS1B	6	656149	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	18341	656149	170458918	304	59205										
SNRNP48	0	genome.wustl.edu	37	chr6	7602900	7602900	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctaccttgaaatcctggcaGaagtacgagattataaaaga	8	8	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	7602900	7602900	G	A	SNP	SNRNP48	ENST00000342415	human	ensembl	69_37n	1	known	missense	c.640	p.E214K	1.000	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566	46	0	0	43	28	39.44	-	-	-	A	7602900	G	A	7602900	3	1	679	1	0	0	0	0	1	0	0	0	14946	943	33	2	662	2	SNRNP48	6	7602900	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6946751	7602900	163512167	305	59206										
TXNDC5	0	genome.wustl.edu	37	chr6	7889793	7889793	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggtttccggagcagagttCatagtgctgtgtacaatcaa	11	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	7889793	7889793	C	G	SNP	TXNDC5	ENST00000379757	human	ensembl	69_37n	-1	known	missense	c.754	p.E252Q	0.823	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264	23	0	0	22	14	38.89	-	-	-	G	7889793	C	G	7889793	3	3	679	1	0	0	0	0	1	0	0	0	16896	835	29	2	564	2	TXNDC5	6	7889793	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	286893	7889793	163225274	306	59207										
SYCP2L	0	genome.wustl.edu	37	chr6	10894107	10894107	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcatctttccagcttcaatCacttattacggatgcattcc	4	12	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	10894107	10894107	C	T	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	missense	c.86	p.S29L	0.139	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	23	0	0	11	13	54.17	-	-	-	T	10894107	C	T	10894107	3	4	679	1	0	0	0	0	1	0	0	0	15525	838	29	2	96	2	SYCP2L	6	10894107	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3004314	10894107	160220960	307	59208										
CAP2	0	genome.wustl.edu	37	chr6	17463284	17463284	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttccttctgatggcctctCagtaccaacaaccccacgag	6	16	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	17463284	17463284	C	G	SNP	CAP2	ENST00000229922	human	ensembl	69_37n	1	known	missense	c.280	p.Q94E	1.000	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186	66	0	0	40	28	41.18	-	-	-	G	17463284	C	G	17463284	3	3	679	1	0	0	0	0	1	0	0	0	2645	827	29	2	290	2	CAP2	6	17463284	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6569177	17463284	153651783	308	59209										
KIF13A	0	genome.wustl.edu	37	chr6	17781527	17781527	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgctcattggcactgaggtCatccgctaaccacatcagga	9	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	17781527	17781527	C	G	SNP	KIF13A	ENST00000259711	human	ensembl	69_37n	-1	known	missense	c.3550	p.D1184H	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	37	0	0	9	10	52.63	-	-	-	G	17781527	C	G	17781527	3	3	679	1	0	0	0	0	1	0	0	0	8326	826	29	2	1932	2	KIF13A	6	17781527	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	318243	17781527	153333540	309	59210										
DEK	0	genome.wustl.edu	37	chr6	18236826	18236826	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctgaactatcctcagactCactttctaaaagtaatataa	3	9	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	18236826	18236826	C	T	SNP	DEK	ENST00000397239	human	ensembl	69_37n	-1	known	missense	c.904	p.E302K	1.000	NULL	pfam_DEK_C,pfam_SAP_DNA-bd,smart_SAP_DNA-bd	-	no_errors	DEK	HGNC	ENSG00000124795	43	0	0	48	25	34.25	-	-	-	T	18236826	C	T	18236826	3	4	679	1	0	0	0	0	1	0	0	0	4460	835	29	2	235	2	DEK	6	18236826	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	455299	18236826	152878241	310	59211										
TDP2	0	genome.wustl.edu	37	chr6	24666935	24666935	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgaaagcgtacttccatctcCcagtcgttctcggccaggaa	9	14	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	24666935	24666935	C	T	SNP	TDP2	ENST00000545995	human	ensembl	69_37n	-1	known	nonsense	c.246	p.W82*	1.000	superfamily_UBA-like	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,superfamily_UBA-like	-	no_errors	TDP2	HGNC	ENSG00000111802	38	0	0	36	6	14.29	-	-	-	T	24666935	C	T	24666935	4	4	679	1	0	0	0	0	0	1	0	0	15824	624	22	4	960	4	TDP2	6	24666935	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6430109	24666935	146448132	311	59212										
GMNN	0	genome.wustl.edu	37	chr6	24784392	24784392	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgaagcacttaaggaaaatGagaaagtatgtattgagtat	10	2	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	24784392	24784392	G	C	SNP	GMNN	ENST00000230056	human	ensembl	69_37n	1	known	missense	c.352	p.E118Q	1.000	pfam_Geminin_fam	pfam_Geminin_fam	-	no_errors	GMNN	HGNC	ENSG00000112312	23	0	0	38	15	28.3	-	-	-	C	24784392	G	C	24784392	3	2	679	1	0	0	0	0	1	0	0	0	6545	1291	45	2	366	2	GMNN	6	24784392	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	117457	24784392	146330675	312	59213										
SLC17A2	0	genome.wustl.edu	37	chr6	25917065	25917065	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatggggacagctcgtccagGagaactgggctgaaaagaaa	14	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	25917065	25917065	G	C	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	missense	c.778	p.P260A	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	48	0	0	40	13	24.53	-	-	-	C	25917065	G	C	25917065	3	2	679	1	0	0	0	0	1	0	0	0	14506	1174	41	2	548	2	SLC17A2	6	25917065	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1132673	25917065	145198002	313	59214										
SLC17A2	0	genome.wustl.edu	37	chr6	25924049	25924049	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atggcgatgatcgcaatgctCagactcacacgctgcgttat	10	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	25924049	25924049	C	G	SNP	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	silent	c.114	p.L38	0.935	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	126	0	0	60	36	37.5	-	-	-	G	25924049	C	G	25924049	2	3	679	1	0	0	0	0	0	0	0	1	14506	813	29	2		2	SLC17A2	6	25924049	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6984	25924049	145191018	314	59215										
HIST1H4D	0	genome.wustl.edu	37	chr6	26189187	26189187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgcttgacgccgccgcggcGagccaggcggcggatagcgg	18	14	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	26189187	26189187	G	A	SNP	HIST1H4D	ENST00000340756	human	ensembl	69_37n	-1	known	missense	c.118	p.R40C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4D	HGNC	ENSG00000188987	41	0	0	31	32	50.79	-	-	-	A	26189187	G	A	26189187	3	1	679	1	0	0	0	0	1	0	0	0	7219	1058	37	1	197	1	HIST1H4D	6	26189187	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	265138	26189187	144925880	315	59216										
BTN3A3	0	genome.wustl.edu	37	chr6	26444478	26444478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagtggaaagtacttgtgtTatttccaagatggtgacttc	10	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	26444478	26444478	T	C	SNP	BTN3A3	ENST00000244519	human	ensembl	69_37n	1	known	missense	c.379	p.Y127H	0.003	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801	120	0	0	89	49	35.51	-	-	-	C	26444478	T	C	26444478	3	2	679	1	0	0	0	0	1	0	0	0	1573	1754	61	5	385	5	BTN3A3	6	26444478	Missense_Mutation	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	255291	26444478	144670589	316	59217										
MAS1L	0	genome.wustl.edu	37	chr6	29454978	29454978	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acacacatcacaagtgaaagGatagcatggaagagcccaga	10	9	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	29454978	29454978	G	C	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	missense	c.702	p.I234M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	12	0	0	24	25	51.02	-	-	-	C	29454978	G	C	29454978	3	2	679	1	0	0	0	0	1	0	0	0	9392	1164	41	2	436	2	MAS1L	6	29454978	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3010500	29454978	141660089	317	59218										
TUBB	0	genome.wustl.edu	37	chr6	30692166	30692166	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcggtgaggaggccgaagagGaggcctaaggcagagccccc	17	11	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	30692166	30692166	G	C	SNP	TUBB	ENST00000327892	human	ensembl	69_37n	1	known	missense	c.1327	p.E443Q	1.000	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB	HGNC	ENSG00000196230	24	0	0	14	10	41.67	-	-	-	C	30692166	G	C	30692166	3	2	679	1	0	0	0	0	1	0	0	0	16849	1175	41	2	1341	2	TUBB	6	30692166	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1237188	30692166	140422901	318	59219										
HLA-DQA2	0	genome.wustl.edu	37	chr6	32712977	32712977	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgtgaacttctaccagtctCacggtccctctggccagtac	9	14	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	32712977	32712977	C	T	SNP	HLA-DQA2	ENST00000374940	human	ensembl	69_37n	1	known	missense	c.124	p.H42Y	0.484	pfam_MHC_II_a_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541	14	0	0	34	15	30.61	-	-	-	T	32712977	C	T	32712977	3	4	679	1	0	0	0	0	1	0	0	0	7256	826	29	2	130	2	HLA-DQA2	6	32712977	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2020811	32712977	138402090	319	59220										
ZBTB9	0	genome.wustl.edu	37	chr6	33423526	33423526	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggtggaagaagaagaggagGaggaggaagatgatgatgat	19	0	0	7			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	33423526	33423526	G	C	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	1	known	missense	c.649	p.E217Q	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	13	0	0	25	17	40.48	-	-	-	C	33423526	G	C	33423526	3	2	679	1	0	0	0	0	1	0	0	0	17654	1175	41	2	651	2	ZBTB9	6	33423526	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	710549	33423526	137691541	320	59221										
ITPR3	0	genome.wustl.edu	37	chr6	33656491	33656491	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtggggcagcatctccttCaacctggccgtgtttatcaa	10	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	33656491	33656491	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	silent	c.6627	p.F2209	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	110	0	0	57	25	30.49	-	-	-	T	33656491	C	T	33656491	2	4	679	1	0	0	0	0	0	0	0	1	7976	825	29	2		2	ITPR3	6	33656491	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	232965	33656491	137458576	321	59222										
SPDEF	0	genome.wustl.edu	37	chr6	34512079	34512079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaggcggacaggccctgctCgggcgtggcgggtggactgg	21	10	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	34512079	34512079	C	T	SNP	SPDEF	ENST00000374037	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPDEF	HGNC	ENSG00000124664	14	0	0	8	8	50	-	-	-	T	34512079	C	T	34512079	3	4	679	1	0	0	0	0	1	0	0	0	15117	893	31	1	873	1	SPDEF	6	34512079	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	855588	34512079	136602988	322	59223										
BYSL	0	genome.wustl.edu	37	chr6	41895231	41895231	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggttgtggaccctgaggatGagcgtgccatagagatgttc	15	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	41895231	41895231	G	T	SNP	BYSL	ENST00000230340	human	ensembl	69_37n	1	known	nonsense	c.388	p.E130*	1.000	NULL	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578	59	0	0	27	23	46	-	-	-	T	41895231	G	T	41895231	4	4	679	1	0	0	0	0	0	1	0	0	1585	1291	45	2	394	2	BYSL	6	41895231	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7383152	41895231	129219836	323	59224										
CCND3	0	genome.wustl.edu	37	chr6	41903792	41903792	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggtctgagaggcttccctGaggctctccctgagtgcagc	13	13	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	41903792	41903792	G	A	SNP	CCND3	ENST00000510503	human	ensembl	69_37n	-1	putative	nonsense	c.385	p.Q129*	0.996	NULL	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CCND3	HGNC	ENSG00000112576	64	0	0	14	9	39.13	-	-	-	A	41903792	G	A	41903792	4	1	679	1	0	0	0	0	0	1	0	0	2947	1277	45	2	117	2	CCND3	6	41903792	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8561	41903792	129211275	324	59225										
UBR2	0	genome.wustl.edu	37	chr6	42657406	42657406	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggagaccgaccagggactCaggtaagaacccatcctgag	14	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	42657406	42657406	C	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	silent	c.5124	p.L1708	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	70	0	0	61	49	44.14	-	-	-	T	42657406	C	T	42657406	2	4	679	1	0	0	0	0	0	0	0	1	16999	813	29	2		2	UBR2	6	42657406	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	753614	42657406	128457661	325	59226										
PTCRA	0	genome.wustl.edu	37	chr6	42890998	42890998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctctccctgccttctgagGagctggcatcctgggagcct	11	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	42890998	42890998	G	A	SNP	PTCRA	ENST00000304672	human	ensembl	69_37n	1	known	missense	c.292	p.E98K	1.000	NULL	NULL	-	no_errors	PTCRA	HGNC	ENSG00000171611	107	0	0	27	16	37.21	-	-	-	A	42890998	G	A	42890998	3	1	679	1	0	0	0	0	1	0	0	0	12815	1175	41	2	298	2	PTCRA	6	42890998	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	233592	42890998	128224069	326	59227										
PPP2R5D	0	genome.wustl.edu	37	chr6	42974749	42974749	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccactcagtgacctcaaattCaaggaggtgaagcgggcagg	13	10	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	42974749	42974749	C	G	SNP	PPP2R5D	ENST00000485511	human	ensembl	69_37n	1	known	missense	c.423	p.F141L	0.999	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5D	HGNC	ENSG00000112640	52	0	0	50	33	39.76	-	-	-	G	42974749	C	G	42974749	3	3	679	1	0	0	0	0	1	0	0	0	12472	825	29	2	437	2	PPP2R5D	6	42974749	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	83751	42974749	128140318	327	59228										
CAPN11	0	genome.wustl.edu	37	chr6	44144023	44144023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcaaaatggaaacactgattCgggtccggaatccctggggc	13	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	44144023	44144023	C	G	SNP	CAPN11	ENST00000398776	human	ensembl	69_37n	1	known	missense	c.949	p.R317G	0.996	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	137	0	0	36	19	34.55	-	-	-	G	44144023	C	G	44144023	3	3	679	1	0	0	0	0	1	0	0	0	2649	875	31	3	983	3	CAPN11	6	44144023	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1169274	44144023	126971044	328	59229										
RUNX2	0	genome.wustl.edu	37	chr6	45480142	45480142	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgatgtgcctaggcgcatttCaggtaaagaccgtgctttaa	11	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	45480142	45480142	C	A	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	nonsense	c.1223	p.S408*	1.000	NULL	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	52	0	0	29	11	27.5	-	-	-	A	45480142	C	A	45480142	4	1	679	1	0	0	0	0	0	1	0	0	13834	838	29	2	1057	2	RUNX2	6	45480142	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1336119	45480142	125634925	329	59230										
ENPP4	0	genome.wustl.edu	37	chr6	46107941	46107941	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaaacatgagcagagtgttGaaaaaaatagatgatcttat	9	3	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	46107941	46107941	G	C	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	1	known	missense	c.621	p.L207F	0.966	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	30	0	0	48	35	42.17	-	-	-	C	46107941	G	C	46107941	3	2	679	1	0	0	0	0	1	0	0	0	5169	1281	45	2	623	2	ENPP4	6	46107941	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	627799	46107941	125007126	330	59231										
TDRD6	0	genome.wustl.edu	37	chr6	46658854	46658854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttatataacgcatattgatGacccttggacattttattgc	6	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	46658854	46658854	G	A	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.2989	p.D997N	0.988	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	24	0	0	31	20	38.46	-	-	-	A	46658854	G	A	46658854	3	1	679	1	0	0	0	0	1	0	0	0	15829	1290	45	2	2991	2	TDRD6	6	46658854	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	550913	46658854	124456213	331	59232										
GPR116	0	genome.wustl.edu	37	chr6	46826994	46826994	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctagatagctcttgtcaatGaccacattgccccagaggtc	8	12	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	46826994	46826994	G	C	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.2646	p.V882	0.778	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	91	0	0	63	24	27.59	-	-	-	C	46826994	G	C	46826994	2	2	679	1	0	0	0	0	0	0	0	1	6683	1277	45	2		2	GPR116	6	46826994	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	168140	46826994	124288073	332	59233										
CRISP1	0	genome.wustl.edu	37	chr6	49819840	49819840	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattggtctctagctgatttCttctgttaccagaaaaatat	6	7	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	49819840	49819840	C	T	SNP	CRISP1	ENST00000335847	human	ensembl	69_37n	-1	known	silent	c.69	p.K23	0.001	NULL	pfam_Cysteine_rich_secretory,pfam_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	CRISP1	HGNC	ENSG00000124812	155	0	0	59	56	48.7	-	-	-	T	49819840	C	T	49819840	2	4	679	1	0	0	0	0	0	0	0	1	3909	912	32	2		2	CRISP1	6	49819840	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2992846	49819840	121295227	333	59234										
GSTA1	0	genome.wustl.edu	37	chr6	52664036	52664036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccattctgccccgtgcattGaagtagtggagcttgggctt	12	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	52664036	52664036	G	C	SNP	GSTA1	ENST00000334575	human	ensembl	69_37n	-1	known	missense	c.30	p.F10L	0.998	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA1	HGNC	ENSG00000243955	87	0	0	101	69	40.59	-	-	-	C	52664036	G	C	52664036	3	2	679	1	0	0	0	0	1	0	0	0	6881	1281	45	2	662	2	GSTA1	6	52664036	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2844196	52664036	118451031	334	59235										
GSTA5	0	genome.wustl.edu	37	chr6	52696672	52696672	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctgaaaatcttccttgcttCttctaaagatttctcatcca	3	12	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	52696672	52696672	C	G	SNP	GSTA5	ENST00000284562	human	ensembl	69_37n	-1	known	missense	c.643	p.E215Q	0.001	superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793	239	0	0	183	100	35.34	-	-	-	G	52696672	C	G	52696672	3	3	679	1	0	0	0	0	1	0	0	0	6885	922	32	2	29	2	GSTA5	6	52696672	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	32636	52696672	118418395	335	59236										
HMGCLL1	0	genome.wustl.edu	37	chr6	55441935	55441935	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaagccagagacatcgggctGaaagcagtgaaggtttgtta	14	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	55441935	55441935	G	C	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.139	p.Q47E	0.000	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	29	0	0	22	16	42.11	-	-	-	C	55441935	G	C	55441935	3	2	679	1	0	0	0	0	1	0	0	0	7281	1299	45	2	1009	2	HMGCLL1	6	55441935	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2745263	55441935	115673132	336	59237										
ZNF451	0	genome.wustl.edu	37	chr6	57033220	57033220	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attctatgttttttaatgcaGatgtggaattagaagaagct	9	3	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	57033220	57033220	G	C	SNP	ZNF451	ENST00000370706	human	ensembl	69_37n	1	known	splice_site	c.3140-1	e15-1	1.000	-	-	-	no_errors	ZNF451	HGNC	ENSG00000112200	35	0	0	84	48	36.36	-	-	-	C	57033220	G	C	57033220	5	2	679	1	0	0	0	0	0	0	1	0	18018	956	33	2	3197	2	ZNF451	6	57033220	Splice_Site	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1591285	57033220	114081847	337	59238										
RIMS1	0	genome.wustl.edu	37	chr6	72957721	72957721	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttttttctcattttaggttCaagttcctttgaatctcaga	5	7	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	72957721	72957721	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	missense	c.2132	p.S711L	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	49	0	0	60	28	31.82	-	-	-	T	72957721	C	T	72957721	3	4	679	1	0	0	0	0	1	0	0	0	13453	838	29	2	2341	2	RIMS1	6	72957721	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	15924501	72957721	98157346	338	59239										
SLC17A5	0	genome.wustl.edu	37	chr6	74331664	74331664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttaaaatgggtacccacgGcactgacttctgtgaagaaa	9	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	74331664	74331664	G	A	SNP	SLC17A5	ENST00000355773	human	ensembl	69_37n	-1	known	missense	c.841	p.P281S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899	16	0	0	28	11	28.21	-	-	-	A	74331664	G	A	74331664	3	1	679	1	0	0	0	0	1	0	0	0	14509	1203	42	4	666	4	SLC17A5	6	74331664	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1373943	74331664	96783403	339	59240										
SNAP91	0	genome.wustl.edu	37	chr6	84311005	84311005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctaacctccaaagagatccaCttcagcagtgacagcagtaa	7	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	84311005	84311005	C	G	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.1309	p.V437L	0.989	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	108	0	0	124	84	40	-	-	-	G	84311005	C	G	84311005	3	3	679	1	0	0	0	0	1	0	0	0	14922	565	20	4	1470	4	SNAP91	6	84311005	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9979341	84311005	86804062	340	59241										
ANKRD6	0	genome.wustl.edu	37	chr6	90276727	90276727	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agatgcggtcgctgcactttCagagcgccttctcgtagctg	12	12	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	90276727	90276727	C	T	SNP	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	missense	c.32	p.S11L	1.000	smart_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	169	0	0	40	21	33.87	-	-	-	T	90276727	C	T	90276727	3	4	679	1	0	0	0	0	1	0	0	0	684	838	29	2	34	2	ANKRD6	6	90276727	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5965722	90276727	80838340	341	59242										
ANKRD6	0	genome.wustl.edu	37	chr6	90331670	90331670	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcagtcgtgggcgaagcctGaggaaaaagagagagaggct	16	6	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	90331670	90331670	G	C	SNP	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	silent	c.822	p.L274	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	34	0	0	20	8	28.57	-	-	-	C	90331670	G	C	90331670	2	2	679	1	0	0	0	0	0	0	0	1	684	1277	45	2		2	ANKRD6	6	90331670	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	54943	90331670	80783397	342	59243										
MDN1	0	genome.wustl.edu	37	chr6	90380739	90380739	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggaagaagaggacgaggtCtgagtagctggagaggaccg	18	6	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	90380739	90380739	C	G	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.13855	p.D4619H	0.999	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	41	0	0	18	12	40	-	-	-	G	90380739	C	G	90380739	3	3	679	1	0	0	0	0	1	0	0	0	9486	913	32	2	3015	2	MDN1	6	90380739	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	49069	90380739	80734328	343	59244										
EPHA7	0	genome.wustl.edu	37	chr6	93979356	93979356	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagacttggtttttactgttGagtaggtccgttccctttga	10	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	93979356	93979356	G	C	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	nonsense	c.1472	p.S491*	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	52	0	0	73	43	37.07	-	-	-	C	93979356	G	C	93979356	4	2	679	1	0	0	0	0	0	1	0	0	5209	1294	45	2	1568	2	EPHA7	6	93979356	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3598617	93979356	77135711	344	59245										
C6orf170	0	genome.wustl.edu	37	chr6	121544395	121544395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gacttacaataacacatgttGggacttcacgaagagaatat	8	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	121544395	121544395	G	A	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	missense	c.2468	p.P823L	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	57	0	0	45	34	43.04	-	-	-	A	121544395	G	A	121544395	3	1	679	1	0	0	0	0	1	0	0	0	2365	1348	47	4	1353	4	C6orf170	6	121544395	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	27565039	121544395	49570672	345	59246										
FABP7	0	genome.wustl.edu	37	chr6	123101495	123101495	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaccaacggtaattatcagtCaagaaggagacaaagtggtc	10	7	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	123101495	123101495	C	G	SNP	FABP7	ENST00000356535	human	ensembl	69_37n	1	known	missense	c.133	p.Q45E	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP7	HGNC	ENSG00000164434	58	0	0	43	25	36.76	-	-	-	G	123101495	C	G	123101495	3	3	679	1	0	0	0	0	1	0	0	0	5402	827	29	2	139	2	FABP7	6	123101495	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1557100	123101495	48013572	346	59247										
VNN2	0	genome.wustl.edu	37	chr6	133078658	133078658	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttccatccataaagtgcatCttctggagtcacaatgattc	6	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	133078658	133078658	C	T	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.241	p.D81N	1.000	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	55	0	0	55	35	38.89	-	-	-	T	133078658	C	T	133078658	3	4	679	1	0	0	0	0	1	0	0	0	17280	913	32	2	1345	2	VNN2	6	133078658	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9977163	133078658	38036409	347	59248										
AHI1	0	genome.wustl.edu	37	chr6	135787398	135787398	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttgctaactgtgtgttcctCaatttgtttttagtgactct	8	7	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	135787398	135787398	C	G	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.303	p.L101F	0.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	246	0	0	194	86	30.71	-	-	-	G	135787398	C	G	135787398	3	3	679	1	0	0	0	0	1	0	0	0	413	825	29	2	3436	2	AHI1	6	135787398	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2708740	135787398	35327669	348	59249										
MAP3K5	0	genome.wustl.edu	37	chr6	136934281	136934281	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatgtcccggtgaactatctGattgtcatggagatatttta	9	6	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	136934281	136934281	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	nonsense	c.2392	p.Q798*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	103	0	0	98	57	36.77	-	-	-	A	136934281	G	A	136934281	4	1	679	1	0	0	0	0	0	1	0	0	9324	1299	45	2	1788	2	MAP3K5	6	136934281	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1146883	136934281	34180786	349	59250										
STXBP5	0	genome.wustl.edu	37	chr6	147684707	147684707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcaagcaaaagtaatctcaCtgccaacccagaactgtgct	7	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	147684707	147684707	C	T	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	silent	c.2782	p.L928	1.000	pfam_Lgl_C,superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	59	0	0	68	46	40.35	-	-	-	T	147684707	C	T	147684707	2	4	679	1	0	0	0	0	0	0	0	1	15447	564	20	4		4	STXBP5	6	147684707	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	10750426	147684707	23430360	350	59251										
MTHFD1L	0	genome.wustl.edu	37	chr6	151206858	151206858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaaagctgtaattgaacttCttgaaaaatcaggtaggatg	9	6	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	151206858	151206858	C	G	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	missense	c.631	p.L211V	1.000	pfam_THF_DH/CycHdrlase_NAD-bd_dom	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	67	0	0	75	71	48.63	-	-	-	G	151206858	C	G	151206858	3	3	679	1	0	0	0	0	1	0	0	0	10000	913	32	2	653	2	MTHFD1L	6	151206858	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3522151	151206858	19908209	351	59252										
SYNE1	0	genome.wustl.edu	37	chr6	152770740	152770740	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgatcccctttaattgtgtCtcatttgtagatatccaaga	6	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	152770740	152770740	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.3432	p.E1144	0.179	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	52	0	0	45	47	51.09	-	-	-	T	152770740	C	T	152770740	2	4	679	1	0	0	0	0	0	0	0	1	15537	912	32	2		2	SYNE1	6	152770740	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1563882	152770740	18344327	352	59253										
TIAM2	0	genome.wustl.edu	37	chr6	155465844	155465844	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagcatagtgcagtctgttCcagagcatcccaagaaagaa	9	10	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	155465844	155465844	C	G	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.1735	p.P579A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	57	0	0	37	28	43.08	-	-	-	G	155465844	C	G	155465844	3	3	679	1	0	0	0	0	1	0	0	0	15986	855	30	2	1745	2	TIAM2	6	155465844	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2695104	155465844	15649223	353	59254										
ARID1B	0	genome.wustl.edu	37	chr6	157099283	157099283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaactgaaaaccgttggcGaagcccccgccgcgccgccc	10	18	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	157099283	157099283	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.220	p.E74K	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	18	0	0	14	8	36.36	-	-	-	A	157099283	G	A	157099283	3	1	679	1	0	0	0	0	1	0	0	0	916	1059	37	1	222	1	ARID1B	6	157099283	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1633439	157099283	14015784	354	59255										
SERAC1	0	genome.wustl.edu	37	chr6	158532535	158532535	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagatctccaatgcctaaatCtgaagaaaataaaaaagtca	5	7	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	158532535	158532535	C	G	SNP	SERAC1	ENST00000367104	human	ensembl	69_37n	-1	known	splice_site	c.1829-1	e16-1	1.000	-	-	-	no_errors	SERAC1	HGNC	ENSG00000122335	56	0	0	45	33	42.31	-	-	-	G	158532535	C	G	158532535	5	3	679	1	0	0	0	0	0	0	1	0	14162	927	32	2	140	2	SERAC1	6	158532535	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1433252	158532535	12582532	355	59256										
SYTL3	0	genome.wustl.edu	37	chr6	159084346	159084346	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctcaaggagttagaacgcGaggccattctccaggtcctg	11	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	159084346	159084346	G	C	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	missense	c.46	p.E16Q	0.641	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	26	0	0	22	17	43.59	-	-	-	C	159084346	G	C	159084346	3	2	679	1	0	0	0	0	1	0	0	0	15576	1059	37	3	48	3	SYTL3	6	159084346	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	551811	159084346	12030721	356	59257										
LPA	0	genome.wustl.edu	37	chr6	161022015	161022015	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agggacgaaggcagtccattCtgcatctgagcatcgtgtca	12	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	161022015	161022015	C	G	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.3061	p.E1021Q	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	77	0	0	47	35	42.68	-	-	-	G	161022015	C	G	161022015	3	3	679	1	0	0	0	0	1	0	0	0	8969	922	32	2	3145	2	LPA	6	161022015	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1937669	161022015	10093052	357	59258										
PLG	0	genome.wustl.edu	37	chr6	161139852	161139852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actcctccccagtatccacgGaacaattggctcccacaggt	7	16	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	6	161139852	161139852	G	A	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.1078	p.E360K	0.009	pirsf_Pept_S1A_plasmin,superfamily_Kringle-like	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	44	0	0	31	18	36.73	-	-	-	A	161139852	G	A	161139852	3	1	679	1	0	0	0	0	1	0	0	0	12160	1175	41	2	1116	2	PLG	6	161139852	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	117837	161139852	9975215	358	59259										
CARD11	0	genome.wustl.edu	37	chr7	2954874	2954874	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggcggtccccatgtaccttCctgcttctcagtcaagagct	9	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	2954874	2954874	C	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	nonsense	c.2836	p.E946*	1.000	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	40	0	0	17	9	34.62	-	-	-	A	2954874	C	A	2954874	4	1	679	1	0	0	0	0	0	1	0	0	2670	864	30	2	648	2	CARD11	7	2954874	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		2954874	156183789	359	59260										
FBXL18	0	genome.wustl.edu	37	chr7	5540850	5540850	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggcagtggacgcagccgctGaggttcaagctggccaggct	16	11	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	5540850	5540850	G	A	SNP	FBXL18	ENST00000458142	human	ensembl	69_37n	-1	putative	missense	c.701	p.S234L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXL18	HGNC	ENSG00000155034	32	0	0	9	9	50	-	-	-	A	5540850	G	A	5540850	3	1	679	1	0	0	0	0	1	0	0	0	5760	1277	45	2	1118	2	FBXL18	7	5540850	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2585976	5540850	153597813	360	59261										
PMS2	0	genome.wustl.edu	37	chr7	6018233	6018233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattaataacttaccattttCatcgataacaaaatcaaagc	2	8	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	6018233	6018233	C	G	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.2269	p.E757Q	1.000	pfam_MutL_C,smart_MutL_C	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	73	0	0	217	46	17.49	-	-	-	G	6018233	C	G	6018233	3	3	679	1	0	0	0	0	1	0	0	0	12217	835	29	2	331	2	PMS2	7	6018233	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	477383	6018233	153120430	361	59262										
MIOS	0	genome.wustl.edu	37	chr7	7612672	7612672	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagaatgatgcttgtctgtCtctttgttggcttccacgag	10	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	7612672	7612672	C	G	SNP	MIOS	ENST00000340080	human	ensembl	69_37n	1	known	missense	c.566	p.S189C	1.000	smart_WD40_repeat	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654	15	0	0	27	30	52.63	-	-	-	G	7612672	C	G	7612672	3	3	679	1	0	0	0	0	1	0	0	0	9660	913	32	2	568	2	MIOS	7	7612672	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1594439	7612672	151525991	362	59263										
DGKB	0	genome.wustl.edu	37	chr7	14613986	14613986	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagaattttcatcagattctCaccttcgtaacctagtggga	7	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	14613986	14613986	C	T	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	missense	c.1624	p.E542K	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	135	0	0	122	69	36.13	-	-	-	T	14613986	C	T	14613986	3	4	679	1	0	0	0	0	1	0	0	0	4502	835	29	2	833	2	DGKB	7	14613986	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7001314	14613986	144524677	363	59264										
ABCB5	0	genome.wustl.edu	37	chr7	20685387	20685387	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtttattacagatggtcatCtcattgaccagtaaggaatt	9	6	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	20685387	20685387	C	T	SNP	ABCB5	ENST00000404938	human	ensembl	69_37n	1	putative	silent	c.687	p.I229	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	41	0	0	42	20	32.26	-	-	-	T	20685387	C	T	20685387	2	4	679	1	0	0	0	0	0	0	0	1	44	903	32	2		2	ABCB5	7	20685387	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6071401	20685387	138453276	364	59265										
DNAH11	0	genome.wustl.edu	37	chr7	21818711	21818711	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaaagaccatcgctgatgctGaggagcgaaaggtcaggcta	13	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	21818711	21818711	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.9493	p.E3165K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	34	0	0	26	17	39.53	-	-	-	A	21818711	G	A	21818711	3	1	679	1	0	0	0	0	1	0	0	0	4635	1291	45	2	9720	2	DNAH11	7	21818711	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1133324	21818711	137319952	365	59266										
DFNA5	0	genome.wustl.edu	37	chr7	24756892	24756892	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccgaactggccgtccagtttCacgtataactcaatgacacc	7	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	24756892	24756892	C	G	SNP	DFNA5	ENST00000446822	human	ensembl	69_37n	-1	putative	nonstop	c.152	p.*51S	0.991	pfam_Gasdermin	pfam_Gasdermin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DFNA5	HGNC	ENSG00000105928	63	0	0	21	17	44.74	-	-	-	G	24756892	C	G	24756892	4	3	679	1	0	0	0	0	0	0	0	0	4490	813	29	2	836	2	DFNA5	7	24756892	Nonstop_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2938181	24756892	134381771	366	59267										
SKAP2	0	genome.wustl.edu	37	chr7	26778477	26778477	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaccaccgtttctgccattCaaatcccagaaagctgtgat	6	13	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	26778477	26778477	C	G	SNP	SKAP2	ENST00000345317	human	ensembl	69_37n	-1	known	missense	c.406	p.E136Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_SH3_domain,prints_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain	-	no_errors	SKAP2	HGNC	ENSG00000005020	85	0	0	62	45	42.06	-	-	-	G	26778477	C	G	26778477	3	3	679	1	0	0	0	0	1	0	0	0	14445	835	29	2	701	2	SKAP2	7	26778477	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2021585	26778477	132360186	367	59268										
NOD1	0	genome.wustl.edu	37	chr7	30472788	30472788	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcatcgttgagttcattttGggtcagcctaaggaaaaaaa	9	6	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	30472788	30472788	G	C	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.2629	p.Q877E	0.997	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	59	0	0	72	41	36.28	-	-	-	C	30472788	G	C	30472788	3	2	679	1	0	0	0	0	1	0	0	0	10588	1357	47	4	244	4	NOD1	7	30472788	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3694311	30472788	128665875	368	59269										
NEUROD6	0	genome.wustl.edu	37	chr7	31378815	31378815	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcttctggtcctcgcattctCtagaaaactttctgcacatc	6	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	31378815	31378815	C	G	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.68	p.R23T	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	268	0	0	84	47	35.88	-	-	-	G	31378815	C	G	31378815	3	3	679	1	0	0	0	0	1	0	0	0	10423	913	32	2	949	2	NEUROD6	7	31378815	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	906027	31378815	127759848	369	59270										
BBS9	0	genome.wustl.edu	37	chr7	33296943	33296943	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatttctccctggctttcttCtgcctggtcctcttgcctac	7	15	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	33296943	33296943	C	G	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.538	p.L180V	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	154	0	0	101	75	42.61	-	-	-	G	33296943	C	G	33296943	3	3	679	1	0	0	0	0	1	0	0	0	1346	912	32	2	556	2	BBS9	7	33296943	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1918128	33296943	125841720	370	59271										
ELMO1	0	genome.wustl.edu	37	chr7	37354490	37354490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagtttgaactatcggcatgCtggagtgcaaaatattcatg	10	6	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	37354490	37354490	C	G	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.156	p.Q52H	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	85	0	0	104	56	35	-	-	-	G	37354490	C	G	37354490	3	3	679	1	0	0	0	0	1	0	0	0	5102	796	28	4	2103	4	ELMO1	7	37354490	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4057547	37354490	121784173	371	59272										
SPDYE1	0	genome.wustl.edu	37	chr7	44040870	44040870	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttgagcaccacaaggacttCaacagtcagcttggtaggag	11	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	44040870	44040870	C	T	SNP	SPDYE1	ENST00000258704	human	ensembl	69_37n	1	known	silent	c.246	p.F82	0.106	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE1	HGNC	ENSG00000136206	59	0	0	32	23	41.82	-	-	-	T	44040870	C	T	44040870	2	4	679	1	0	0	0	0	0	0	0	1	15120	825	29	2		2	SPDYE1	7	44040870	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6686380	44040870	115097793	372	59273										
PKD1L1	0	genome.wustl.edu	37	chr7	47979837	47979837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctctgtgattcccggtcttCtgcctttccattcagagcac	8	14	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	47979837	47979837	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.238	p.E80K	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	99	0	0	56	38	40.43	-	-	-	T	47979837	C	T	47979837	3	4	679	1	0	0	0	0	1	0	0	0	12038	922	32	2	8531	2	PKD1L1	7	47979837	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3938967	47979837	111158826	373	59274										
ABCA13	0	genome.wustl.edu	37	chr7	48316003	48316003	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatcttgaaccatatgcagtCagaaactagtaggaaaacag	8	7	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	48316003	48316003	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	nonsense	c.6740	p.S2247*	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	9	0	0	17	7	29.17	-	-	-	G	48316003	C	G	48316003	4	3	679	1	0	0	0	0	0	1	0	0	31	838	29	2	6635	2	ABCA13	7	48316003	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	336166	48316003	110822660	374	59275										
GTF2I	0	genome.wustl.edu	37	chr7	74163414	74163414	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagaaagttgaaaatctcttCaatgagaaatgtggtaagtc	9	5	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	74163414	74163414	C	G	SNP	GTF2I	ENST00000324896	human	ensembl	69_37n	1	known	missense	c.2223	p.F741L	1.000	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809	19	0	0	11	5	31.25	-	-	-	G	74163414	C	G	74163414	3	3	679	1	0	0	0	0	1	0	0	0	6918	825	29	2	2317	2	GTF2I	7	74163414	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	25847411	74163414	84975249	375	59276										
TRIM73	0	genome.wustl.edu	37	chr7	75024709	75024709	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggggccacgaggaggcactCatcgtttcgttccaaccgcc	12	14	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	75024709	75024709	C	G	SNP	TRIM73	ENST00000463766	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.235	-	-	-	no_errors	TRIM73	HGNC	ENSG00000178809	28	0	0	6	6	50	-	-	-	G	75024709	C	G	75024709	1	3	679	0	1	0	0	0	0	0	0	0	16642	841	29	2		2	TRIM73	7	75024709	RNA	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	861295	75024709	84113954	376	59277										
CCDC146	0	genome.wustl.edu	37	chr7	76891515	76891515	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaactttctcgtaagcaaaGagagaaagaacgagattttc	9	6	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	76891515	76891515	G	A	SNP	CCDC146	ENST00000285871	human	ensembl	69_37n	1	known	missense	c.1064	p.R355K	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	58	0	0	29	20	40.82	-	-	-	A	76891515	G	A	76891515	3	1	679	1	0	0	0	0	1	0	0	0	2805	942	33	2	1094	2	CCDC146	7	76891515	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1866806	76891515	82247148	377	59278										
RSBN1L	0	genome.wustl.edu	37	chr7	77408043	77408043	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcactcagaggaggacacttCtcagaatacagctactcatg	8	11	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	77408043	77408043	C	T	SNP	RSBN1L	ENST00000334955	human	ensembl	69_37n	1	known	missense	c.2099	p.S700F	0.823	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257	49	0	0	49	28	36.36	-	-	-	T	77408043	C	T	77408043	3	4	679	1	0	0	0	0	1	0	0	0	13783	913	32	2	2129	2	RSBN1L	7	77408043	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	516528	77408043	81730620	378	59279										
ABCB4	0	genome.wustl.edu	37	chr7	87049354	87049354	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagccattgaccgcagtcttCtggtgaggatctcgccagct	11	12	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	87049354	87049354	C	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.2354	p.R785K	0.809	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	52	0	0	39	30	43.48	-	-	-	T	87049354	C	T	87049354	3	4	679	1	0	0	0	0	1	0	0	0	43	913	32	2	1546	2	ABCB4	7	87049354	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9641311	87049354	72089309	379	59280										
ABCB4	0	genome.wustl.edu	37	chr7	87069538	87069538	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggtaatttcatgataaactCataggcgttggcctctttga	9	7	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	87069538	87069538	C	G	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.1537	p.E513Q	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	78	0	0	71	44	38.26	-	-	-	G	87069538	C	G	87069538	3	3	679	1	0	0	0	0	1	0	0	0	43	835	29	2	2387	2	ABCB4	7	87069538	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	20184	87069538	72069125	380	59281										
STEAP2	0	genome.wustl.edu	37	chr7	89859216	89859216	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atattgaaaactcttggaatGaggaagaagtttggagaatt	11	2	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	89859216	89859216	G	A	SNP	STEAP2	ENST00000287908	human	ensembl	69_37n	1	known	missense	c.1051	p.E351K	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom,pfam_NADP_OxRdtase_F420	-	no_errors	STEAP2	HGNC	ENSG00000157214	58	0	0	79	46	36.51	-	-	-	A	89859216	G	A	89859216	3	1	679	1	0	0	0	0	1	0	0	0	15369	1291	45	2	1061	2	STEAP2	7	89859216	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2789678	89859216	69279447	381	59282										
KRIT1	0	genome.wustl.edu	37	chr7	91864902	91864902	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtttttatccgctcaagagGagaaggtcggaataaagctg	12	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	91864902	91864902	G	C	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.544	p.P182A	1.000	NULL	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	89	0	0	94	65	40.88	-	-	-	C	91864902	G	C	91864902	3	2	679	1	0	0	0	0	1	0	0	0	8498	1174	41	2	1714	2	KRIT1	7	91864902	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2005686	91864902	67273761	382	59283										
ANKIB1	0	genome.wustl.edu	37	chr7	92017328	92017328	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaacagccaaagaaaagatgGagcaattgagcagagctctc	10	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	92017328	92017328	G	C	SNP	ANKIB1	ENST00000265742	human	ensembl	69_37n	1	known	missense	c.1879	p.E627Q	1.000	smart_Znf_RING	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629	72	0	0	45	37	45.12	-	-	-	C	92017328	G	C	92017328	3	2	679	1	0	0	0	0	1	0	0	0	630	1175	41	2	1929	2	ANKIB1	7	92017328	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	152426	92017328	67121335	383	59284										
ASNS	0	genome.wustl.edu	37	chr7	97488553	97488553	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtttctccacattgtcataGagggcgtgcaggggtacatc	12	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	97488553	97488553	G	C	SNP	ASNS	ENST00000175506	human	ensembl	69_37n	-1	known	silent	c.645	p.L215	0.999	tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669	47	0	0	71	42	37.17	-	-	-	C	97488553	G	C	97488553	2	2	679	1	0	0	0	0	0	0	0	1	1052	929	33	2		2	ASNS	7	97488553	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5471225	97488553	61650110	384	59285										
LMTK2	0	genome.wustl.edu	37	chr7	97833436	97833436	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttactcccggttctccatctCtcccgccaacattgccagct	5	18	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	97833436	97833436	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	missense	c.4421	p.S1474C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	29	0	0	35	31	46.97	-	-	-	G	97833436	C	G	97833436	3	3	679	1	0	0	0	0	1	0	0	0	8915	913	32	2	4471	2	LMTK2	7	97833436	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	344883	97833436	61305227	385	59286										
BRI3	0	genome.wustl.edu	37	chr7	97920524	97920524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttgccttgaggaagcgacGatgccccaactgtggagcca	12	11	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	97920524	97920524	G	A	SNP	BRI3	ENST00000297290	human	ensembl	69_37n	1	known	missense	c.347	p.R116Q	1.000	pfam_Brain_I3	pfam_Brain_I3	-	no_errors	BRI3	HGNC	ENSG00000164713	86	0	0	59	31	34.44	-	-	-	A	97920524	G	A	97920524	3	1	679	1	0	0	0	0	1	0	0	0	1520	1058	37	1	357	1	BRI3	7	97920524	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	87088	97920524	61218139	386	59287										
MUC17	0	genome.wustl.edu	37	chr7	100686956	100686956	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctccacgactgtgaaccctGaggctgtcaccaccatgacc	8	17	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	100686956	100686956	G	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.12259	p.E4087Q	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	82	0	0	156	91	36.69	-	-	-	C	100686956	G	C	100686956	3	2	679	1	0	0	0	0	1	0	0	0	10046	1291	45	2	12269	2	MUC17	7	100686956	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2766432	100686956	58451707	387	59288										
RELN	0	genome.wustl.edu	37	chr7	103205791	103205791	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctttccgaggtgtaaattGaactttccgtgtaatgcaga	9	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	103205791	103205791	G	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	nonsense	c.5144	p.S1715*	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	48	0	0	44	33	42.86	-	-	-	C	103205791	G	C	103205791	4	2	679	1	0	0	0	0	0	1	0	0	13303	1294	45	2	5366	2	RELN	7	103205791	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2518835	103205791	55932872	388	59289										
MLL5	0	genome.wustl.edu	37	chr7	104681467	104681467	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttggaaatggctgcaggttCagagtaagtatttaaattgg	12	4	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	104681467	104681467	C	G	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	nonsense	c.68	p.S23*	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	42	0	0	33	18	35.29	-	-	-	G	104681467	C	G	104681467	4	3	679	1	0	0	0	0	0	1	0	0	9695	838	29	2	70	2	MLL5	7	104681467	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1475676	104681467	54457196	389	59290										
NRCAM	0	genome.wustl.edu	37	chr7	107791178	107791178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattccattaaaaggatgcaGaagaaacaaatgaaaacagc	7	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	107791178	107791178	G	A	SNP	NRCAM	ENST00000379022	human	ensembl	69_37n	-1	known	missense	c.3698	p.S1233F	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	38	0	0	50	28	35.9	-	-	-	A	107791178	G	A	107791178	3	1	679	1	0	0	0	0	1	0	0	0	10717	957	33	2		2	NRCAM	7	107791178	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3109711	107791178	51347485	390	59291										
WASL	0	genome.wustl.edu	37	chr7	123335879	123335879	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atttgaaaacatacttacatCaaagcctgtatttggatccc	5	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	123335879	123335879	C	G	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	missense	c.670	p.D224H	1.000	pfam_PAK_box_Rho-bd,superfamily_WASP_C,smart_PAK_box_Rho-bd	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	62	0	0	80	30	27.27	-	-	-	G	123335879	C	G	123335879	3	3	679	1	0	0	0	0	1	0	0	0	17353	826	29	2	867	2	WASL	7	123335879	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	15544701	123335879	35802784	391	59292										
SND1	0	genome.wustl.edu	37	chr7	127724814	127724814	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgatggagaacatgcgcaatGacattgccagtcacccccct	9	13	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	127724814	127724814	G	T	SNP	SND1	ENST00000354725	human	ensembl	69_37n	1	known	missense	c.2149	p.D717Y	1.000	pfam_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococcal_nuclease,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococcal_nuclease	-	no_errors	SND1	HGNC	ENSG00000197157	26	0	0	23	12	34.29	-	-	-	T	127724814	G	T	127724814	3	4	679	1	0	0	0	0	1	0	0	0	14933	1290	45	2	2223	2	SND1	7	127724814	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4388935	127724814	31413849	392	59293										
SMO	0	genome.wustl.edu	37	chr7	128846408	128846408	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggcctggtgctcatcgtggGaggctacttcctcatccgag	13	13	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	128846408	128846408	G	C	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	missense	c.1244	p.G415A	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	95	0	0	26	21	44.68	-	-	-	C	128846408	G	C	128846408	3	2	679	1	0	0	0	0	1	0	0	0	14889	1174	41	2	1266	2	SMO	7	128846408	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1121594	128846408	30292255	393	59294										
DGKI	0	genome.wustl.edu	37	chr7	137308281	137308281	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caatctctttactgtggaagGagaacttttgctggaagccc	10	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	137308281	137308281	G	C	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	missense	c.824	p.S275C	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	159	0	0	88	52	37.14	-	-	-	C	137308281	G	C	137308281	3	2	679	1	0	0	0	0	1	0	0	0	4507	1174	41	2	2485	2	DGKI	7	137308281	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8461873	137308281	21830382	394	59295										
OR6B1	0	genome.wustl.edu	37	chr7	143701587	143701587	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctacttcatctcctgcctCagcttctgtggtcccaatgt	6	14	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	143701587	143701587	C	G	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	silent	c.498	p.L166	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	100	0	0	108	41	27.52	-	-	-	G	143701587	C	G	143701587	2	3	679	1	0	0	0	0	0	0	0	1	11260	813	29	2		2	OR6B1	7	143701587	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6393306	143701587	15437076	395	59296										
OR6B1	0	genome.wustl.edu	37	chr7	143701667	143701667	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctctcctgcacagacatgtCcataactgagttggtagact	8	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	143701667	143701667	C	G	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	missense	c.578	p.S193C	0.789	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	132	0	0	120	47	28.14	-	-	-	G	143701667	C	G	143701667	3	3	679	1	0	0	0	0	1	0	0	0	11260	855	30	2	580	2	OR6B1	7	143701667	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	80	143701667	15436996	396	59297										
ZNF777	0	genome.wustl.edu	37	chr7	149129965	149129966	+	In_Frame_Ins	INS	-	-	TCC													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcaagtgctgcggcagctcaINStcctcctcctcctcttcttc							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	149129965	149129966	-	TCC	INS	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	in_frame_ins	c.1398_1397	p.466in_frame_insE	0.025:0.090	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	12	0	0	12	5	29.41	-	-	-	TCC	149129966	-	TCC	149129965	7	5	679	1	0	1	1	0	0	0	0	0	18243	214	8	0	1101	0	ZNF777	7	149129965	In_Frame_Ins	INS	-	TCGA-D8-A1JA-01A-11D-A13L-09	5428298	149129965	10008698	397	59298										
CDK5	0	genome.wustl.edu	37	chr7	150753678	150753678	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctcctcacctttacaatctCaggatcgaggtcaccattgc	6	14	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	7	150753678	150753678	C	G	SNP	CDK5	ENST00000485972	human	ensembl	69_37n	-1	known	missense	c.301	p.E101Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CDK5	HGNC	ENSG00000164885	37	0	0	15	40	72.73	-	-	-	G	150753678	C	G	150753678	3	3	679	1	0	0	0	0	1	0	0	0	3171	835	29	2	609	2	CDK5	7	150753678	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1623713	150753678	8384985	398	59299										
CSMD1	0	genome.wustl.edu	37	chr8	2975929	2975929	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgatgaacttaccatcacatCttggaaaagggtagttccag	9	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	2975929	2975929	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6425	p.R2142K	0.633	pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	47	0	0	42	28	40	-	-	-	T	2975929	C	T	2975929	3	4	679	1	0	0	0	0	1	0	0	0	3976	913	32	2	4388	2	CSMD1	8	2975929	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		2975929	143388093	399	59300										
CSMD1	0	genome.wustl.edu	37	chr8	3224589	3224589	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaagccctcgtacgaaattGagaagtctgatataaaccga	9	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	3224589	3224589	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.3083	p.S1028L	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	68	0	0	39	20	33.9	-	-	-	A	3224589	G	A	3224589	3	1	679	1	0	0	0	0	1	0	0	0	3976	1294	45	2	7818	2	CSMD1	8	3224589	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	248660	3224589	143139433	400	59301										
XKR5	0	genome.wustl.edu	37	chr8	6669366	6669366	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctgctttagggacaccttCaaacgcagagctgttctcta	8	12	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	6669366	6669366	C	T	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	136	0	0	58	45	43.69	-	-	-	T	6669366	C	T	6669366	1	4	679	0	1	0	0	0	0	0	0	0	17531	835	29	2		2	XKR5	8	6669366	RNA	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3444777	6669366	139694656	401	59302										
XKR6	0	genome.wustl.edu	37	chr8	10782265	10782265	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgtctgcatattcatacatCatagcccagtagaagcgtcg	8	11	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	10782265	10782265	C	T	SNP	XKR6	ENST00000416569	human	ensembl	69_37n	-1	known	missense	c.840	p.M280I	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044	38	0	0	13	16	55.17	-	-	-	T	10782265	C	T	10782265	3	4	679	1	0	0	0	0	1	0	0	0	17532	826	29	2	1093	2	XKR6	8	10782265	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4112899	10782265	135581757	402	59303										
LZTS1	0	genome.wustl.edu	37	chr8	20110692	20110692	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagatgggggagcggacacaCgaggggcccttgtctgcctt	17	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	20110692	20110692	C	T	SNP	LZTS1	ENST00000265801	human	ensembl	69_37n	-1	known	silent	c.750	p.S250	0.001	NULL	pfam_Fez1	-	no_errors	LZTS1	HGNC	ENSG00000061337	17	0	0	9	4	30.77	-	-	-	T	20110692	C	T	20110692	2	4	679	1	0	0	0	0	0	0	0	1	9205	523	19	1		1	LZTS1	8	20110692	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9328427	20110692	126253330	403	59304										
ADAM28	0	genome.wustl.edu	37	chr8	24187573	24187573	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaactttggaatgtttcatGacgactattcttgcaagtgt	8	7	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	24187573	24187573	G	A	SNP	ADAM28	ENST00000265769	human	ensembl	69_37n	1	known	missense	c.1048	p.D350N	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	107	0	0	35	35	50	-	-	-	A	24187573	G	A	24187573	3	1	679	1	0	0	0	0	1	0	0	0	246	1290	45	2	1090	2	ADAM28	8	24187573	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4076881	24187573	122176449	404	59305										
ADAM28	0	genome.wustl.edu	37	chr8	24201083	24201083	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccctcccgactgcgatgactCctcagtggtcttccgtaggt	10	15	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	24201083	24201083	C	G	SNP	ADAM28	ENST00000265769	human	ensembl	69_37n	1	known	missense	c.1976	p.S659C	0.122	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	81	0	0	31	20	39.22	-	-	-	G	24201083	C	G	24201083	3	3	679	1	0	0	0	0	1	0	0	0	246	855	30	2	2102	2	ADAM28	8	24201083	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	13510	24201083	122162939	405	59306										
DOCK5	0	genome.wustl.edu	37	chr8	25156537	25156537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatggcctctatgtgaacttCaagaactttgtctgcaacat	7	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	25156537	25156537	C	T	SNP	DOCK5	ENST00000444569	human	ensembl	69_37n	1	novel	missense	c.80	p.S27L	1.000	NULL	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK5	HGNC	ENSG00000147459	84	0	0	91	44	32.59	-	-	-	T	25156537	C	T	25156537	3	4	679	1	0	0	0	0	1	0	0	0	4725	825	29	2	714	2	DOCK5	8	25156537	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	955454	25156537	121207485	406	59307										
EPHX2	0	genome.wustl.edu	37	chr8	27358452	27358452	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgttttccagaggacttctGaatgatgctttccagaaagg	11	7	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	27358452	27358452	G	C	SNP	EPHX2	ENST00000521684	human	ensembl	69_37n	1	putative	nonstop	c.110	p.*37S	0.780	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom	pfam_AB_hydrolase_1,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPHX2	HGNC	ENSG00000120915	76	0	0	47	34	41.98	-	-	-	C	27358452	G	C	27358452	4	2	679	1	0	0	0	0	0	0	0	0	5217	1277	45	2	117	2	EPHX2	8	27358452	Nonstop_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2201915	27358452	119005570	407	59308										
TEX15	0	genome.wustl.edu	37	chr8	30695150	30695150	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcaggcacaagagaaacatCagtttctgggtttatatcag	9	7	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	30695150	30695150	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7501	p.D2501H	0.024	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	35	0	0	29	18	38.3	-	-	-	G	30695150	C	G	30695150	3	3	679	1	0	0	0	0	1	0	0	0	15874	826	29	2	876	2	TEX15	8	30695150	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3336698	30695150	115668872	408	59309										
TEX15	0	genome.wustl.edu	37	chr8	30701576	30701576	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caactgaacattcttgctttCtttcaaaagcttccacaaat	3	11	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	30701576	30701576	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.4958	p.R1653T	0.988	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	42	0	0	27	19	41.3	-	-	-	G	30701576	C	G	30701576	3	3	679	1	0	0	0	0	1	0	0	0	15874	913	32	2	3427	2	TEX15	8	30701576	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6426	30701576	115662446	409	59310										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37730279	37730279	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggctgctggtgttcttctCtgtgcctgtctcacgggtcc	12	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	37730279	37730279	C	G	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.2041	p.E681Q	0.026	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	94	0	0	53	27	33.75	-	-	-	G	37730279	C	G	37730279	3	3	679	1	0	0	0	0	1	0	0	0	12976	922	32	2	1822	2	RAB11FIP1	8	37730279	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7028703	37730279	108633743	410	59311										
FGFR1	0	genome.wustl.edu	37	chr8	38272342	38272342	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgtggtgaatgtcccgtgcGaggccaaagtctgctatctt	12	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	38272342	38272342	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.2025	p.L675	0.004	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	98	0	0	56	29	34.12	-	-	-	A	38272342	G	A	38272342	2	1	679	1	0	0	0	0	0	0	0	1	5909	1045	37	1		1	FGFR1	8	38272342	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	542063	38272342	108091680	411	59312										
PRKDC	0	genome.wustl.edu	37	chr8	48869967	48869967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caagcaaaccgaaatctctgGaaaaaactaaagatgtctgt	7	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	48869967	48869967	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.179	p.S60Y	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	35	0	0	75	40	34.48	-	-	-	T	48869967	G	T	48869967	3	4	679	1	0	0	0	0	1	0	0	0	12602	1174	41	2	12546	2	PRKDC	8	48869967	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	10597625	48869967	97494055	412	59313										
RP1	0	genome.wustl.edu	37	chr8	55533670	55533670	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagagcggagacccccaattCggcggggtcagggtggtggt	18	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	55533670	55533670	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	silent	c.144	p.F48	0.008	superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	55	0	0	55	27	32.93	-	-	-	T	55533670	C	T	55533670	2	4	679	1	0	0	0	0	0	0	0	1	13618	883	31	1		1	RP1	8	55533670	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6663703	55533670	90830352	413	59314										
CSPP1	0	genome.wustl.edu	37	chr8	68062107	68062107	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ataaaagggctgttgtatctCtagacccaaatttagccact	7	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	68062107	68062107	C	G	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.2050	p.L684V	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	58	0	0	61	32	34.41	-	-	-	G	68062107	C	G	68062107	3	3	679	1	0	0	0	0	1	0	0	0	3994	912	32	2	2225	2	CSPP1	8	68062107	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12528437	68062107	78301915	414	59315										
FABP9	0	genome.wustl.edu	37	chr8	82371455	82371455	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attcttcccccagcttgaagGagatcttagtgtcctggaaa	9	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	82371455	82371455	G	C	SNP	FABP9	ENST00000379071	human	ensembl	69_37n	-1	known	missense	c.191	p.S64C	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP9	HGNC	ENSG00000205186	83	0	0	96	55	36.42	-	-	-	C	82371455	G	C	82371455	3	2	679	1	0	0	0	0	1	0	0	0	5403	1174	41	2	218	2	FABP9	8	82371455	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	14309348	82371455	63992567	415	59316										
FABP12	0	genome.wustl.edu	37	chr8	82441796	82441796	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctccatctgtactgatggtCacagtgggttttgccaaacg	10	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	82441796	82441796	C	T	SNP	FABP12	ENST00000519696	human	ensembl	69_37n	-1	known	missense	c.76	p.D26N	0.949	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FABP12	HGNC	ENSG00000197416	87	0	0	81	44	35.2	-	-	-	T	82441796	C	T	82441796	3	4	679	1	0	0	0	0	1	0	0	0	5396	813	29	2	309	2	FABP12	8	82441796	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	70341	82441796	63922226	416	59317										
FZD6	0	genome.wustl.edu	37	chr8	104337379	104337379	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcttgctatgaacaaagttGaaggagacaacattagtgga	10	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	104337379	104337379	G	A	SNP	FZD6	ENST00000358755	human	ensembl	69_37n	1	known	missense	c.1045	p.E349K	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930	130	1	0.76	108	63	36.63	-	-	-	A	104337379	G	A	104337379	3	1	679	1	0	0	0	0	1	0	0	0	6183	1291	45	2	1055	2	FZD6	8	104337379	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	21895583	104337379	42026643	417	59318										
TMEM74	0	genome.wustl.edu	37	chr8	109797208	109797208	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcacactgtttctgacagcaGagagcagctcttgtggctgc	12	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	109797208	109797208	G	A	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	silent	c.120	p.L40	0.898	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	56	0	0	48	22	31.43	-	-	-	A	109797208	G	A	109797208	2	1	679	1	0	0	0	0	0	0	0	1	16297	929	33	2		2	TMEM74	8	109797208	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5459829	109797208	36566814	418	59319										
NUDCD1	0	genome.wustl.edu	37	chr8	110305595	110305595	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgatttttcttactgatagtGacccactccagagaaacata	6	9	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	110305595	110305595	G	T	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	silent	c.618	p.V206	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	74	0	0	50	25	33.33	-	-	-	T	110305595	G	T	110305595	2	4	679	1	0	0	0	0	0	0	0	1	10795	1277	45	2		2	NUDCD1	8	110305595	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	508387	110305595	36058427	419	59320										
TRPS1	0	genome.wustl.edu	37	chr8	116426596	116426596	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaggtctggaatgcttgatCgccaaatctagaggaatgtc	11	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	116426596	116426596	C	T	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	silent	c.3540	p.A1180	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	74	0	0	70	31	30.69	-	-	-	T	116426596	C	T	116426596	2	4	679	1	0	0	0	0	0	0	0	1	16689	871	31	1		1	TRPS1	8	116426596	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6121001	116426596	29937426	420	59321										
MRPL13	0	genome.wustl.edu	37	chr8	121455458	121455458	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacaggtttatgtaatccctGaagtcttatagatgccatag	8	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	121455458	121455458	G	C	SNP	MRPL13	ENST00000306185	human	ensembl	69_37n	-1	known	missense	c.118	p.Q40E	1.000	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,pirsf_Ribosomal_L13,tigrfam_Ribosomal_L13_bac-type	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,pirsf_Ribosomal_L13,tigrfam_Ribosomal_L13_bac-type	-	no_errors	MRPL13	HGNC	ENSG00000172172	86	0	0	42	37	46.84	-	-	-	C	121455458	G	C	121455458	3	2	679	1	0	0	0	0	1	0	0	0	9850	1299	45	2	442	2	MRPL13	8	121455458	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5028862	121455458	24908564	421	59322										
HAS2	0	genome.wustl.edu	37	chr8	122627209	122627209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ataagactgacaggccctttCtatattaaaagccatccaat	5	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	122627209	122627209	C	G	SNP	HAS2	ENST00000303924	human	ensembl	69_37n	-1	known	missense	c.799	p.E267Q	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	40	0	0	26	13	33.33	-	-	-	G	122627209	C	G	122627209	3	3	679	1	0	0	0	0	1	0	0	0	7013	922	32	2	863	2	HAS2	8	122627209	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1171751	122627209	23736813	422	59323										
ZHX2	0	genome.wustl.edu	37	chr8	123964657	123964657	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagctgcctccaaacacccaGaggagcacatcagaatctgg	9	14	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	123964657	123964657	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	1	known	missense	c.907	p.E303K	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	41	0	0	29	23	44.23	-	-	-	A	123964657	G	A	123964657	3	1	679	1	0	0	0	0	1	0	0	0	17772	943	33	2	909	2	ZHX2	8	123964657	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1337448	123964657	22399365	423	59324										
FER1L6	0	genome.wustl.edu	37	chr8	125072857	125072857	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtggatcggcctcaggctctCattgagtgcggaggacaagg	16	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	125072857	125072857	C	T	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	silent	c.3054	p.L1018	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	124	0	0	92	45	32.85	-	-	-	T	125072857	C	T	125072857	2	4	679	1	0	0	0	0	0	0	0	1	5861	813	29	2		2	FER1L6	8	125072857	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1108200	125072857	21291165	424	59325										
ASAP1	0	genome.wustl.edu	37	chr8	131130824	131130824	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atccctggatttgatggcctCaagcaattcatttagtttag	8	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	131130824	131130824	C	T	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.1705	p.E569K	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	67	0	0	54	27	33.33	-	-	-	T	131130824	C	T	131130824	3	4	679	1	0	0	0	0	1	0	0	0	1014	835	29	2	1732	2	ASAP1	8	131130824	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6057967	131130824	15233198	425	59326										
PHF20L1	0	genome.wustl.edu	37	chr8	133836315	133836315	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacagcatttggtatgaacaGaaagtaatctttaagcaaaa	7	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	133836315	133836315	G	C	SNP	PHF20L1	ENST00000395383	human	ensembl	69_37n	1	novel	missense	c.1658	p.R553T	1.000	NULL	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	40	0	0	51	24	32	-	-	-	C	133836315	G	C	133836315	3	2	679	1	0	0	0	0	1	0	0	0	11906	957	33	2		2	PHF20L1	8	133836315	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2705491	133836315	12527707	426	59327										
COL22A1	0	genome.wustl.edu	37	chr8	139614391	139614391	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatccaggctctccaggcttCccagggaccccctgcaagga	10	16	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	139614391	139614391	C	G	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	silent	c.4152	p.G1384	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	109	0	0	40	26	39.39	-	-	-	G	139614391	C	G	139614391	2	3	679	1	0	0	0	0	0	0	0	1	3711	842	30	2		2	COL22A1	8	139614391	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5778076	139614391	6749631	427	59328										
TRAPPC9	0	genome.wustl.edu	37	chr8	141301148	141301148	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atataccatcagctgaacttCacacacatctccttgaaccc	3	15	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	141301148	141301148	C	T	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.2092	p.E698K	1.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	179	0	0	87	60	40.82	-	-	-	T	141301148	C	T	141301148	3	4	679	1	0	0	0	0	1	0	0	0	16561	835	29	2	1696	2	TRAPPC9	8	141301148	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1686757	141301148	5062874	428	59329										
ZNF707	0	genome.wustl.edu	37	chr8	144773808	144773808	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagacctcgtctctcgcctgGaacagtgggaggagccgtgg	15	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	8	144773808	144773808	G	A	SNP	ZNF707	ENST00000530574	human	ensembl	69_37n	1	putative	nonsense	c.171	p.W57*	0.010	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_stop_codon:bad_bp_length_for_coding_region	ZNF707	HGNC	ENSG00000181135	9	0	0	15	17	53.12	-	-	-	A	144773808	G	A	144773808	4	1	679	1	0	0	0	0	0	1	0	0	18207	1175	41	2	191	2	ZNF707	8	144773808	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3472660	144773808	1590214	429	59330										
KIAA2026	0	genome.wustl.edu	37	chr9	5969267	5969267	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caattcgtaaaagactatttCtggcaaatttagaatttgct	6	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	5969267	5969267	C	G	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.964	p.E322Q	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	51	0	0	19	32	61.54	-	-	-	G	5969267	C	G	5969267	3	3	679	1	0	0	0	0	1	0	0	0	8322	922	32	2	5371	2	KIAA2026	9	5969267	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		5969267	135244164	430	59331										
TEK	0	genome.wustl.edu	37	chr9	27157944	27157944	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgcccccatgagcccatcacCataggaagggactttgaagc	10	14	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	27157944	27157944	C	A	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.168	p.T56	0.988	pfam_Tyr_kin_Tie2_Ig-like_dom-1_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	79	0	0	187	26	12.21	-	-	-	A	27157944	C	A	27157944	2	1	679	1	0	0	0	0	0	0	0	1	15846	581	21	4		4	TEK	9	27157944	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	21188677	27157944	114055487	431	59332										
NFX1	0	genome.wustl.edu	37	chr9	33328583	33328583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcgtttttattaaagatttCattcatacctgtgaaaagct	5	6	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	33328583	33328583	C	G	SNP	NFX1	ENST00000379540	human	ensembl	69_37n	1	known	missense	c.1911	p.F637L	1.000	pfam_Znf_NFX1,smart_Znf_NFX1	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102	199	0	0	43	83	65.35	-	-	-	G	33328583	C	G	33328583	3	3	679	1	0	0	0	0	1	0	0	0	10459	825	29	2	1949	2	NFX1	9	33328583	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6170639	33328583	107884848	432	59333										
CNTFR	0	genome.wustl.edu	37	chr9	34557648	34557648	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgaatgtggcagcggttcttGagggctgggtccttctcaca	14	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	34557648	34557648	G	C	SNP	CNTFR	ENST00000351266	human	ensembl	69_37n	-1	known	silent	c.480	p.L160	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTFR	HGNC	ENSG00000122756	113	0	0	18	32	64	-	-	-	C	34557648	G	C	34557648	2	2	679	1	0	0	0	0	0	0	0	1	3668	1277	45	2		2	CNTFR	9	34557648	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1229065	34557648	106655783	433	59334										
APBA1	0	genome.wustl.edu	37	chr9	72082803	72082803	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttggaaggagttttgtctGagagcagctgagtggagcca	15	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	72082803	72082803	G	C	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	nonsense	c.1418	p.S473*	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	57	0	0	40	26	39.39	-	-	-	C	72082803	G	C	72082803	4	2	679	1	0	0	0	0	0	1	0	0	757	1294	45	2	1131	2	APBA1	9	72082803	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	37525155	72082803	69130628	434	59335										
MAMDC2	0	genome.wustl.edu	37	chr9	72746489	72746489	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaggttatgttgccctggatGatatttcattctctcctgtt	9	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	72746489	72746489	G	A	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	missense	c.955	p.D319N	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	325	0	0	166	97	36.88	-	-	-	A	72746489	G	A	72746489	3	1	679	1	0	0	0	0	1	0	0	0	9274	1290	45	2	981	2	MAMDC2	9	72746489	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	663686	72746489	68466942	435	59336										
TRPM3	0	genome.wustl.edu	37	chr9	73151072	73151072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atatggcgcacttggctcctCtgccgagtagctgttggcgc	13	12	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	73151072	73151072	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.5002	p.E1668K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	122	0	0	71	55	43.31	-	-	-	T	73151072	C	T	73151072	3	4	679	1	0	0	0	0	1	0	0	0	16683	922	32	2	206	2	TRPM3	9	73151072	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	404583	73151072	68062359	436	59337										
VPS13A	0	genome.wustl.edu	37	chr9	79934578	79934578	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggattttagaccatggaatCttggtatcaaggtatatcta	9	5	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	79934578	79934578	C	G	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.5404	p.L1802V	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	117	0	0	56	44	44	-	-	-	G	79934578	C	G	79934578	3	3	679	1	0	0	0	0	1	0	0	0	17286	913	32	2	5570	2	VPS13A	9	79934578	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6783506	79934578	61278853	437	59338										
FRMD3	0	genome.wustl.edu	37	chr9	85924483	85924483	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggttttccactccacacttCcaaagatgtttgcaggcagc	8	12	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	85924483	85924483	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	nonsense	c.894	p.W298*	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	34	0	0	21	11	34.38	-	-	-	T	85924483	C	T	85924483	4	4	679	1	0	0	0	0	0	1	0	0	6099	856	30	2	919	2	FRMD3	9	85924483	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5989905	85924483	55288948	438	59339										
UBQLN1	0	genome.wustl.edu	37	chr9	86278792	86278792	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atggaaaagaactgatacctGaggatttactccagcaagag	10	7	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	86278792	86278792	G	C	SNP	UBQLN1	ENST00000376395	human	ensembl	69_37n	-1	known	missense	c.1615	p.Q539E	1.000	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018	92	0	0	38	31	44.93	-	-	-	C	86278792	G	C	86278792	3	2	679	1	0	0	0	0	1	0	0	0	16993	1299	45	2	162	2	UBQLN1	9	86278792	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	354309	86278792	54934639	439	59340										
KIF27	0	genome.wustl.edu	37	chr9	86518066	86518066	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcctccgattcctcgaaatGaggtgaggacagccttcctg	11	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	86518066	86518066	G	C	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	nonsense	c.1367	p.S456*	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	91	0	0	63	45	41.28	-	-	-	C	86518066	G	C	86518066	4	2	679	1	0	0	0	0	0	1	0	0	8348	1294	45	2	2898	2	KIF27	9	86518066	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	239274	86518066	54695365	440	59341										
NTRK2	0	genome.wustl.edu	37	chr9	87570324	87570324	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacctggcgtcccagcacttCgtgcaccgcgatttggccac	10	16	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	87570324	87570324	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	silent	c.2064	p.F688	0.972	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	39	0	0	10	12	54.55	-	-	-	T	87570324	C	T	87570324	2	4	679	1	0	0	0	0	0	0	0	1	10780	883	31	1		1	NTRK2	9	87570324	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1052258	87570324	53643107	441	59342										
SEMA4D	0	genome.wustl.edu	37	chr9	91993811	91993811	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgctccccattctgctgggaGaagctccctggctctactaa	9	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	91993811	91993811	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	silent	c.2397	p.F799	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	26	0	0	20	23	53.49	-	-	-	A	91993811	G	A	91993811	2	1	679	1	0	0	0	0	0	0	0	1	14122	933	33	2		2	SEMA4D	9	91993811	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4423487	91993811	49219620	442	59343										
SEMA4D	0	genome.wustl.edu	37	chr9	91996003	91996003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcatcgccgctcatctcctGaatcaaacccctgcaaaaca	5	16	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	91996003	91996003	G	C	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	missense	c.1630	p.Q544E	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	30	0	0	46	36	43.9	-	-	-	C	91996003	G	C	91996003	3	2	679	1	0	0	0	0	1	0	0	0	14122	1299	45	2	1536	2	SEMA4D	9	91996003	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2192	91996003	49217428	443	59344										
FAM22F	0	genome.wustl.edu	37	chr9	97083438	97083438	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagcctcggcggggctggagGaggcaggctctggggcccct	19	12	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	97083438	97083438	G	C	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.919	p.P307A	0.007	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	32	0	0	5	5	50	-	-	-	C	97083438	G	C	97083438	3	2	679	1	0	0	0	0	1	0	0	0	5587	1174	41	2	1367	2	FAM22F	9	97083438	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5087435	97083438	44129993	444	59345										
CTSL2	0	genome.wustl.edu	37	chr9	99795261	99795261	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggtagctggctgctgtggcGattccacagtggttgttctt	15	8	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	99795261	99795261	G	A	SNP	CTSL2	ENST00000259470	human	ensembl	69_37n	-1	known	silent	c.975	p.I325	0.991	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL2	HGNC	ENSG00000136943	68	0	0	79	42	34.71	-	-	-	A	99795261	G	A	99795261	2	1	679	1	0	0	0	0	0	0	0	1	4071	1048	37	1		1	CTSL2	9	99795261	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2711823	99795261	41418170	445	59346										
GABBR2	0	genome.wustl.edu	37	chr9	101133761	101133761	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attaccttcttcttcattttCacatttttgaagatggcgtg	6	8	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	101133761	101133761	C	T	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	silent	c.1755	p.V585	1.000	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	145	0	0	47	41	46.59	-	-	-	T	101133761	C	T	101133761	2	4	679	1	0	0	0	0	0	0	0	1	6205	813	29	2		2	GABBR2	9	101133761	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1338500	101133761	40079670	446	59347										
STX17	0	genome.wustl.edu	37	chr9	102713468	102713468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagcagcaacagcagaatttCtccaactccatttggaatct	6	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	102713468	102713468	C	G	SNP	STX17	ENST00000259400	human	ensembl	69_37n	1	known	missense	c.316	p.L106V	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874	46	0	0	60	41	40.59	-	-	-	G	102713468	C	G	102713468	3	3	679	1	0	0	0	0	1	0	0	0	15431	913	32	2	326	2	STX17	9	102713468	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1579707	102713468	38499963	447	59348										
INVS	0	genome.wustl.edu	37	chr9	103062875	103062875	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacctacagtgtatacatctCcttgagaacagtggaagatc	8	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	103062875	103062875	C	G	SNP	INVS	ENST00000262457	human	ensembl	69_37n	1	known	silent	c.3117	p.L1039	0.967	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509	60	0	0	46	30	39.47	-	-	-	G	103062875	C	G	103062875	2	3	679	1	0	0	0	0	0	0	0	1	7841	842	30	2		2	INVS	9	103062875	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	349407	103062875	38150556	448	59349										
BAAT	0	genome.wustl.edu	37	chr9	104130594	104130594	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaatcaattacccctgggaaGagaccctctcctgaaaaata	6	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	104130594	104130594	G	A	SNP	BAAT	ENST00000259407	human	ensembl	69_37n	-1	known	silent	c.477	p.L159	0.008	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881	57	0	0	31	31	50	-	-	-	A	104130594	G	A	104130594	2	1	679	1	0	0	0	0	0	0	0	1	1284	929	33	2		2	BAAT	9	104130594	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1067719	104130594	37082837	449	59350										
FKTN	0	genome.wustl.edu	37	chr9	108397331	108397331	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatccctctgttttgctgcaGatacctgtttccgaagttta	7	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	108397331	108397331	G	C	SNP	FKTN	ENST00000223528	human	ensembl	69_37n	1	known	splice_site	c.1173-1	e9-1	1.000	-	-	-	no_errors	FKTN	HGNC	ENSG00000106692	129	0	0	67	40	37.38	-	-	-	C	108397331	G	C	108397331	5	2	679	1	0	0	0	0	0	0	1	0	5965	956	33	2	1206	2	FKTN	9	108397331	Splice_Site	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4266737	108397331	32816100	450	59351										
ZNF462	0	genome.wustl.edu	37	chr9	109685791	109685791	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgctgaggacaatgtgaatGagctacgatgtgggtccgtg	15	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	109685791	109685791	G	C	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.127	p.E43Q	0.914	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	187	0	0	70	42	37.5	-	-	-	C	109685791	G	C	109685791	3	2	679	1	0	0	0	0	1	0	0	0	18022	1291	45	2	129	2	ZNF462	9	109685791	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1288460	109685791	31527640	451	59352										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112899674	112899674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccagaagacagtggtgcctCagccgccaagggacagaaat	12	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	112899674	112899674	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.1850	p.S617L	0.051	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	36	0	0	10	5	33.33	-	-	-	T	112899674	C	T	112899674	3	4	679	1	0	0	0	0	1	0	0	0	11483	838	29	2	1880	2	PALM2-AKAP2	9	112899674	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3213883	112899674	28313757	452	59353										
SVEP1	0	genome.wustl.edu	37	chr9	113141791	113141791	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgtgagctggtggaccacatGagatttctacaggataacaa	11	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	113141791	113141791	G	C	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	nonsense	c.10244	p.S3415*	1.000	superfamily_Complement_control_module,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	33	0	0	47	23	32.86	-	-	-	C	113141791	G	C	113141791	4	2	679	1	0	0	0	0	0	1	0	0	15511	1294	45	2	491	2	SVEP1	9	113141791	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	242117	113141791	28071640	453	59354										
SVEP1	0	genome.wustl.edu	37	chr9	113168823	113168823	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttccacagtcaaaatctgtCccattgacagttccatattc	4	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	113168823	113168823	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	silent	c.9057	p.G3019	0.962	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	20	0	0	21	10	32.26	-	-	-	G	113168823	C	G	113168823	2	3	679	1	0	0	0	0	0	0	0	1	15511	842	30	2		2	SVEP1	9	113168823	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	27032	113168823	28044608	454	59355										
MUSK	0	genome.wustl.edu	37	chr9	113550161	113550161	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgtatttcatcagaaaacaGaggctttccaagtttttctc	6	8	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	113550161	113550161	G	A	SNP	MUSK	ENST00000374438	human	ensembl	69_37n	1	known	missense	c.518	p.R173K	0.001	pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	12	0	0	10	4	28.57	-	-	-	A	113550161	G	A	113550161	3	1	679	1	0	0	0	0	1	0	0	0	10061	957	33	2		2	MUSK	9	113550161	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	381338	113550161	27663270	455	59356										
FKBP15	0	genome.wustl.edu	37	chr9	115983586	115983586	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cccagagtcccagggcctgtCaccgccgacgtcgtaaaatg	11	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	115983586	115983586	C	T	SNP	FKBP15	ENST00000446284	human	ensembl	69_37n	-1	known	missense	c.13	p.D5N	0.000	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_start_codon	FKBP15	HGNC	ENSG00000119321	25	0	0	9	6	40	-	-	-	T	115983586	C	T	115983586	3	4	679	1	0	0	0	0	1	0	0	0	5951	841	29	2		2	FKBP15	9	115983586	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2433425	115983586	25229845	456	59357										
TLR4	0	genome.wustl.edu	37	chr9	120470909	120470909	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atccccgacaacctccccttCtcaaccaagaacctggacct	4	19	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	120470909	120470909	C	G	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.162	p.F54L	0.405	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	128	0	0	108	70	39.33	-	-	-	G	120470909	C	G	120470909	3	3	679	1	0	0	0	0	1	0	0	0	16048	912	32	2	168	2	TLR4	9	120470909	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4487323	120470909	20742522	457	59358										
HSPA5	0	genome.wustl.edu	37	chr9	127999296	127999296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttccctgtacccttgtcttCagctgtcactcgaagaatac	7	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	127999296	127999296	C	G	SNP	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514Q	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	104	0	0	117	81	40.91	-	-	-	G	127999296	C	G	127999296	3	3	679	1	0	0	0	0	1	0	0	0	7467	835	29	2	428	2	HSPA5	9	127999296	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7528387	127999296	13214135	458	59359										
GAPVD1	0	genome.wustl.edu	37	chr9	128117073	128117073	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttaccactgtctgtgtgaGattactgcttgagagcaaag	10	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	128117073	128117073	G	C	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.3791	p.R1264T	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	45	0	0	66	22	25	-	-	-	C	128117073	G	C	128117073	3	2	679	1	0	0	0	0	1	0	0	0	6289	942	33	2	3877	2	GAPVD1	9	128117073	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	117777	128117073	13096358	459	59360										
LRSAM1	0	genome.wustl.edu	37	chr9	130223478	130223478	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacgtggaaaggaatcaactGatgcagctcccacgttccat	9	11	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	130223478	130223478	G	C	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	silent	c.348	p.L116	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	30	0	0	24	18	42.86	-	-	-	C	130223478	G	C	130223478	2	2	679	1	0	0	0	0	0	0	0	1	9109	1277	45	2		2	LRSAM1	9	130223478	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2106405	130223478	10989953	460	59361										
NAIF1	0	genome.wustl.edu	37	chr9	130829249	130829249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgccgtgccaggccgcactCttggcggccaggggtacccc	14	16	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	130829249	130829249	C	G	SNP	NAIF1	ENST00000373078	human	ensembl	69_37n	-1	known	missense	c.132	p.K44N	1.000	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	8	0	0	10	6	37.5	-	-	-	G	130829249	C	G	130829249	3	3	679	1	0	0	0	0	1	0	0	0	10218	912	32	2	859	2	NAIF1	9	130829249	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	605771	130829249	10384182	461	59362										
LRRC8A	0	genome.wustl.edu	37	chr9	131670664	131670664	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagctgcggcagctgaacctCaacaacgagtggacgctgga	13	11	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	131670664	131670664	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	silent	c.1221	p.L407	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	28	0	0	25	15	37.5	-	-	-	T	131670664	C	T	131670664	2	4	679	1	0	0	0	0	0	0	0	1	9087	813	29	2		2	LRRC8A	9	131670664	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	841415	131670664	9542767	462	59363										
FAM73B	0	genome.wustl.edu	37	chr9	131804681	131804681	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccctggctgcccaccagctGaagaggcgacggaggaggaa	16	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	131804681	131804681	G	A	SNP	FAM73B	ENST00000358369	human	ensembl	69_37n	1	known	silent	c.195	p.L65	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343	40	0	0	15	11	42.31	-	-	-	A	131804681	G	A	131804681	2	1	679	1	0	0	0	0	0	0	0	1	5663	1277	45	2		2	FAM73B	9	131804681	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	134017	131804681	9408750	463	59364										
DDX31	0	genome.wustl.edu	37	chr9	135537890	135537890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtcttaatgcactgtctctCctcctggtttctatcacttg	6	12	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	135537890	135537890	C	T	SNP	DDX31	ENST00000372159	human	ensembl	69_37n	-1	known	missense	c.583	p.E195K	0.034	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	164	1	0.61	147	112	43.24	-	-	-	T	135537890	C	T	135537890	3	4	679	1	0	0	0	0	1	0	0	0	4387	864	30	2	2055	2	DDX31	9	135537890	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3733209	135537890	5675541	464	59365										
OBP2B	0	genome.wustl.edu	37	chr9	136083930	136083930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggacaccttcctgggcctCctgtcctccggaaagtcctt	11	15	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	136083930	136083930	C	G	SNP	OBP2B	ENST00000372034	human	ensembl	69_37n	-1	known	missense	c.132	p.R44S	0.003	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102	166	0	0	20	16	43.24	-	-	-	G	136083930	C	G	136083930	3	3	679	1	0	0	0	0	1	0	0	0	10884	854	30	2	400	2	OBP2B	9	136083930	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	546040	136083930	5129501	465	59366										
DBH	0	genome.wustl.edu	37	chr9	136507373	136507373	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggatcctggaggagccgttCcggtcactggaggccatcaa	15	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	136507373	136507373	C	T	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	silent	c.531	p.F177	0.000	smart_DOMON_domain	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	20	0	0	13	7	35	-	-	-	T	136507373	C	T	136507373	2	4	679	1	0	0	0	0	0	0	0	1	4282	854	30	2		2	DBH	9	136507373	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	423443	136507373	4706058	466	59367										
COL5A1	0	genome.wustl.edu	37	chr9	137702139	137702139	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggcagaaaggaagcaagggGgacaaaggagaacaggtaag	18	4	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	9	137702139	137702139	G	C	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	silent	c.3513	p.G1171	0.259	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	9	0	0	20	12	37.5	-	-	-	C	137702139	G	C	137702139	2	2	679	1	0	0	0	0	0	0	0	1	3726	1219	43	4		4	COL5A1	9	137702139	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1194766	137702139	3511292	467	59368										
IDI1	0	genome.wustl.edu	37	chr10	1088574	1088574	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtaggagagctggttacctCttccaagggaattcctagct	11	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	1088574	1088574	C	G	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.535	p.E179Q	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	41	0	0	52	26	33.33	-	-	-	G	1088574	C	G	1088574	3	3	679	1	0	0	0	0	1	0	0	0	7553	922	32	2	327	2	IDI1	10	1088574	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		1088574	134446173	468	59369										
FBXO18	0	genome.wustl.edu	37	chr10	5969465	5969465	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgagccaagaagcgtctcatCatgaccaaatcattggaaaa	8	10	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	5969465	5969465	C	G	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	missense	c.2943	p.I981M	1.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	115	0	0	116	69	37.3	-	-	-	G	5969465	C	G	5969465	3	3	679	1	0	0	0	0	1	0	0	0	5777	816	29	2	3026	2	FBXO18	10	5969465	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4880891	5969465	129565282	469	59370										
NMT2	0	genome.wustl.edu	37	chr10	15151762	15151762	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatactgcaaattgccatctCctataccaaacttgagtttt	4	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	15151762	15151762	C	G	SNP	NMT2	ENST00000378143	human	ensembl	69_37n	-1	known	missense	c.1508	p.G503A	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465	43	0	0	73	50	40.65	-	-	-	G	15151762	C	G	15151762	3	3	679	1	0	0	0	0	1	0	0	0	10576	855	30	2	89	2	NMT2	10	15151762	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9182297	15151762	120382985	470	59371										
ITGA8	0	genome.wustl.edu	37	chr10	15628630	15628630	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgatgttgatttgcaggctCacaaaattgctgtctggatt	11	6	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	15628630	15628630	C	T	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	silent	c.2325	p.V775	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	99	0	0	78	44	36.07	-	-	-	T	15628630	C	T	15628630	2	4	679	1	0	0	0	0	0	0	0	1	7936	813	29	2		2	ITGA8	10	15628630	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	476868	15628630	119906117	471	59372										
MLLT10	0	genome.wustl.edu	37	chr10	21906127	21906128	+	Frame_Shift_Del	DEL	AG	AG	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggataaacatcatgagaaAgagaaaaaagtaagtggatt							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	21906127	21906128	AG	-	DEL	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	frame_shift_del	c.690_691	p.K234fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	53	0	0	36	14	28	-	-	-	-	21906128	AG	-	21906127	7	5	679	1	0	1	0	1	0	0	0	0	9697	69	3	0	716	0	MLLT10	10	21906127	Frame_Shift_Del	DEL	AG	TCGA-D8-A1JA-01A-11D-A13L-09	6277497	21906127	113628620	472	59373										
DNAJC1	0	genome.wustl.edu	37	chr10	22045637	22045637	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagcttttagcttgttttttCttttggaccagttcaaccag	7	9	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	22045637	22045637	C	G	SNP	DNAJC1	ENST00000376980	human	ensembl	69_37n	-1	known	missense	c.1644	p.K548N	1.000	superfamily_Homeodomain-like	pfam_DnaJ_N,pfam_SANT/Myb,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC1	HGNC	ENSG00000136770	203	1	0.49	121	76	38.58	-	-	-	G	22045637	C	G	22045637	3	3	679	1	0	0	0	0	1	0	0	0	4663	912	32	2	24	2	DNAJC1	10	22045637	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	139510	22045637	113489110	473	59374										
ARMC4	0	genome.wustl.edu	37	chr10	28196616	28196616	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcatttttgatgcatggacaGagtgcccatgctgcgctggc	13	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	28196616	28196616	G	A	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	silent	c.2586	p.L862	0.175	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	100	0	0	46	39	45.88	-	-	-	A	28196616	G	A	28196616	2	1	679	1	0	0	0	0	0	0	0	1	957	929	33	2		2	ARMC4	10	28196616	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6150979	28196616	107338131	474	59375										
MTPAP	0	genome.wustl.edu	37	chr10	30653342	30653342	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatttcttgaccagctcttaGatgatggtgatgtttagctc	9	7	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	30653342	30653342	G	C	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.959	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	40	0	0	22	17	43.59	-	-	-	C	30653342	G	C	30653342	1	2	679	0	1	0	0	0	0	0	0	0	10028	957	33	2		2	MTPAP	10	30653342	RNA	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2456726	30653342	104881405	475	59376										
ZEB1	0	genome.wustl.edu	37	chr10	31799649	31799649	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacctgtccatattgtgataGaggctataaacgctttacct	7	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	31799649	31799649	G	C	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.533	p.R178T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	37	0	0	42	25	37.31	-	-	-	C	31799649	G	C	31799649	3	2	679	1	0	0	0	0	1	0	0	0	17719	942	33	2	562	2	ZEB1	10	31799649	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1146307	31799649	103735098	476	59377										
ZNF33A	0	genome.wustl.edu	37	chr10	38343824	38343824	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatttgggagaactttgtgtGatagttcatccctcttgttc	9	7	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	38343824	38343824	G	A	SNP	ZNF33A	ENST00000432900	human	ensembl	69_37n	1	known	missense	c.790	p.D264N	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180	57	0	0	67	33	33	-	-	-	A	38343824	G	A	38343824	3	1	679	1	0	0	0	0	1	0	0	0	17950	1290	45	2	786	2	ZNF33A	10	38343824	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6544175	38343824	97190923	477	59378										
ZNF33A	0	genome.wustl.edu	37	chr10	38344439	38344439	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttaaagtacaccagagaactCacacaggtgagaaacctttt	7	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	38344439	38344439	C	G	SNP	ZNF33A	ENST00000432900	human	ensembl	69_37n	1	known	missense	c.1405	p.H469D	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180	73	0	0	96	61	38.85	-	-	-	G	38344439	C	G	38344439	3	3	679	1	0	0	0	0	1	0	0	0	17950	826	29	2	1401	2	ZNF33A	10	38344439	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	615	38344439	97190308	478	59379										
RET	0	genome.wustl.edu	37	chr10	43609119	43609119	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctgcgagcccgaagacatCcagggtgagtgggtggcggc	17	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	43609119	43609119	C	G	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	missense	c.1875	p.I625M	0.967	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	20	0	0	12	5	29.41	-	-	-	G	43609119	C	G	43609119	3	3	679	1	0	0	0	0	1	0	0	0	13318	845	30	2	1913	2	RET	10	43609119	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5264680	43609119	91925628	479	59380										
ZNF22	0	genome.wustl.edu	37	chr10	45498934	45498934	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggcatgactattcgatttGactcaagcttcagtagactc	10	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	45498934	45498934	G	C	SNP	ZNF22	ENST00000298299	human	ensembl	69_37n	1	known	missense	c.118	p.D40H	0.939	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF22	HGNC	ENSG00000165512	9	0	0	23	22	48.89	-	-	-	C	45498934	G	C	45498934	3	2	679	1	0	0	0	0	1	0	0	0	17870	1290	45	2	120	2	ZNF22	10	45498934	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1889815	45498934	90035813	480	59381										
ERCC6	0	genome.wustl.edu	37	chr10	50668447	50668447	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctctgttggagatgttgatGaaggatgctgcacagagaag	14	5	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	50668447	50668447	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.4034	p.S1345L	0.107	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	92	0	0	38	25	39.68	-	-	-	A	50668447	G	A	50668447	3	1	679	1	0	0	0	0	1	0	0	0	5254	1294	45	2	455	2	ERCC6	10	50668447	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5169513	50668447	84866300	481	59382										
ANK3	0	genome.wustl.edu	37	chr10	61833092	61833092	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaacatctttatagattttgGagagaatttcttttttgggg	9	3	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	61833092	61833092	G	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.7547	p.S2516C	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	38	0	0	47	22	31.88	-	-	-	C	61833092	G	C	61833092	3	2	679	1	0	0	0	0	1	0	0	0	622	1174	41	2	5927	2	ANK3	10	61833092	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	11164645	61833092	73701655	482	59383										
ANK3	0	genome.wustl.edu	37	chr10	62029921	62029921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctctggcttgcaccattgtCaagaagaaacttgacaactt	8	10	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	62029921	62029921	C	G	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.481	p.D161H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	61	0	0	35	26	40.62	-	-	-	G	62029921	C	G	62029921	3	3	679	1	0	0	0	0	1	0	0	0	622	826	29	2	13141	2	ANK3	10	62029921	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	196829	62029921	73504826	483	59384										
JMJD1C	0	genome.wustl.edu	37	chr10	64958426	64958426	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaactcatagcttcatcatCatattggtcaggagaagaga	8	8	5	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	64958426	64958426	C	G	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.5338	p.D1780H	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	48	0	0	83	52	38.52	-	-	-	G	64958426	C	G	64958426	3	3	679	1	0	0	0	0	1	0	0	0	8004	826	29	2	2344	2	JMJD1C	10	64958426	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2928505	64958426	70576321	484	59385										
JMJD1C	0	genome.wustl.edu	37	chr10	64966922	64966922	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attttttatagcattaggttCagtctcactggcattactac	6	8	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	64966922	64966922	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.4507	p.E1503K	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	38	0	0	51	40	43.96	-	-	-	T	64966922	C	T	64966922	3	4	679	1	0	0	0	0	1	0	0	0	8004	835	29	2	3183	2	JMJD1C	10	64966922	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8496	64966922	70567825	485	59386										
ATOH7	0	genome.wustl.edu	37	chr10	69991102	69991102	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggccgaagtgctcacagtgGagacccacccagtcccgctc	11	17	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	69991102	69991102	G	C	SNP	ATOH7	ENST00000373673	human	ensembl	69_37n	-1	known	silent	c.333	p.L111	0.367	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ATOH7	HGNC	ENSG00000179774	20	0	0	7	6	46.15	-	-	-	C	69991102	G	C	69991102	2	2	679	1	0	0	0	0	0	0	0	1	1117	1161	41	2		2	ATOH7	10	69991102	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5024180	69991102	65543645	486	59387										
HNRNPH3	0	genome.wustl.edu	37	chr10	70098408	70098408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgggcgtggaagtatgtatGacagaatgcgacgaggaggt	17	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	70098408	70098408	G	A	SNP	HNRNPH3	ENST00000265866	human	ensembl	69_37n	1	known	missense	c.400	p.D134N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746	133	0	0	134	74	35.58	-	-	-	A	70098408	G	A	70098408	3	1	679	1	0	0	0	0	1	0	0	0	7319	1290	45	2	410	2	HNRNPH3	10	70098408	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	107306	70098408	65436339	487	59388										
RUFY2	0	genome.wustl.edu	37	chr10	70161423	70161423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agctcctatttcctctgcttCggggtacagcttctccacca	7	15	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	70161423	70161423	C	T	SNP	RUFY2	ENST00000388768	human	ensembl	69_37n	-1	known	missense	c.355	p.E119K	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130	70	0	0	71	46	39.32	-	-	-	T	70161423	C	T	70161423	3	4	679	1	0	0	0	0	1	0	0	0	13825	893	31	1	1747	1	RUFY2	10	70161423	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	63015	70161423	65373324	488	59389										
DNA2	0	genome.wustl.edu	37	chr10	70192010	70192010	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgcatcatgtggaagaacaGaactaaggtaggatataaac	10	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	70192010	70192010	G	C	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.2084	p.S695C	1.000	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	52	0	0	40	18	31.03	-	-	-	C	70192010	G	C	70192010	3	2	679	1	0	0	0	0	1	0	0	0	4632	942	33	2	1396	2	DNA2	10	70192010	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	30587	70192010	65342737	489	59390										
VPS26A	0	genome.wustl.edu	37	chr10	70916861	70916861	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agagcagaagttatgattttGaatttatgcaagttgaaaag	10	2	0	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	70916861	70916861	G	C	SNP	VPS26A	ENST00000263559	human	ensembl	69_37n	1	known	missense	c.328	p.E110Q	1.000	pfam_VPS26	pfam_VPS26	-	no_errors	VPS26A	HGNC	ENSG00000122958	63	0	0	62	33	34.74	-	-	-	C	70916861	G	C	70916861	3	2	679	1	0	0	0	0	1	0	0	0	17294	1291	45	2	342	2	VPS26A	10	70916861	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	724851	70916861	64617886	490	59391										
HK1	0	genome.wustl.edu	37	chr10	71158402	71158402	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcctccagcagctaggtctGaatagcacctgcgatgacag	10	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	71158402	71158402	G	C	SNP	HK1	ENST00000448642	human	ensembl	69_37n	1	known	silent	c.2532	p.L844	0.997	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515	68	0	0	20	12	37.5	-	-	-	C	71158402	G	C	71158402	2	2	679	1	0	0	0	0	0	0	0	1	7241	1277	45	2		2	HK1	10	71158402	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	241541	71158402	64376345	491	59392										
COL13A1	0	genome.wustl.edu	37	chr10	71562459	71562459	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctattttgggacgagtcaatCaactgctggacgaggtctgt	12	8	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	71562459	71562459	C	G	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	missense	c.280	p.Q94E	1.000	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	18	0	0	24	14	36.84	-	-	-	G	71562459	C	G	71562459	3	3	679	1	0	0	0	0	1	0	0	0	3700	827	29	2	282	2	COL13A1	10	71562459	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	404057	71562459	63972288	492	59393										
COL13A1	0	genome.wustl.edu	37	chr10	71705450	71705450	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcaaaggagaccctgggatGacaggaccaacgggagcagc	15	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	71705450	71705450	G	A	SNP	COL13A1	ENST00000356340	human	ensembl	69_37n	1	known	missense	c.1959	p.M653I	0.992	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	48	0	0	33	17	34	-	-	-	A	71705450	G	A	71705450	3	1	679	1	0	0	0	0	1	0	0	0	3700	1290	45	2	2101	2	COL13A1	10	71705450	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	142991	71705450	63829297	493	59394										
ADAMTS14	0	genome.wustl.edu	37	chr10	72511354	72511354	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggaggagatggacacctatGagtgggcgctcaagagctgg	17	7	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	72511354	72511354	G	C	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	missense	c.2557	p.E853Q	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	40	0	0	12	7	36.84	-	-	-	C	72511354	G	C	72511354	3	2	679	1	0	0	0	0	1	0	0	0	259	1291	45	2	2623	2	ADAMTS14	10	72511354	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	805904	72511354	63023393	494	59395										
ECD	0	genome.wustl.edu	37	chr10	74897829	74897829	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttggagcctcagaaggttctCtgcaatattaaaggacaaag	10	7	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	74897829	74897829	C	G	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	splice_site	c.1521-1	e12-1	1.000	-	-	-	no_errors	ECD	HGNC	ENSG00000122882	40	0	0	59	49	45.37	-	-	-	G	74897829	C	G	74897829	5	3	679	1	0	0	0	0	0	0	1	0	4923	927	32	2	525	2	ECD	10	74897829	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2386475	74897829	60636918	495	59396										
FUT11	0	genome.wustl.edu	37	chr10	75533554	75533554	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggctttggcaatgtggaaGagattcctgagaatgacagg	14	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	75533554	75533554	G	C	SNP	FUT11	ENST00000372841	human	ensembl	69_37n	1	known	missense	c.1315	p.E439Q	1.000	pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT11	HGNC	ENSG00000196968	21	0	0	18	10	35.71	-	-	-	C	75533554	G	C	75533554	3	2	679	1	0	0	0	0	1	0	0	0	6152	943	33	2	1321	2	FUT11	10	75533554	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	635725	75533554	60001193	496	59397										
C10orf11	0	genome.wustl.edu	37	chr10	77807039	77807039	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggtcagcttggaaaaggatGaggaagactacaagagatac	13	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	77807039	77807039	G	C	SNP	C10orf11	ENST00000354343	human	ensembl	69_37n	1	known	missense	c.376	p.E126Q	1.000	NULL	NULL	-	no_errors	C10orf11	HGNC	ENSG00000148655	39	0	0	30	19	38.78	-	-	-	C	77807039	G	C	77807039	3	2	679	1	0	0	0	0	1	0	0	0	1592	1291	45	2	302	2	C10orf11	10	77807039	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2273485	77807039	57727708	497	59398										
RNLS	0	genome.wustl.edu	37	chr10	90341456	90341456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aacgccataggctaacagttCatcataaaaactgaaataaa	5	8	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	90341456	90341456	C	T	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	missense	c.235	p.E79K	1.000	NULL	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	21	0	0	12	14	53.85	-	-	-	T	90341456	C	T	90341456	3	4	679	1	0	0	0	0	1	0	0	0	13591	835	29	2	889	2	RNLS	10	90341456	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12534417	90341456	45193291	498	59399										
IFIT5	0	genome.wustl.edu	37	chr10	91178390	91178390	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgactgctctctgtgagctCcgactttccatttaaataca	6	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	91178390	91178390	C	G	SNP	IFIT5	ENST00000371795	human	ensembl	69_37n	1	known	silent	c.1434	p.L478	0.565	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778	30	0	0	42	17	28.81	-	-	-	G	91178390	C	G	91178390	2	3	679	1	0	0	0	0	0	0	0	1	7579	842	30	2		2	IFIT5	10	91178390	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	836934	91178390	44356357	499	59400										
PANK1	0	genome.wustl.edu	37	chr10	91353679	91353679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcctttagctgccatttccaGagcttcttcaaaggtctcac	7	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	91353679	91353679	G	C	SNP	PANK1	ENST00000307534	human	ensembl	69_37n	-1	known	missense	c.1378	p.L460V	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782	74	0	0	34	32	48.48	-	-	-	C	91353679	G	C	91353679	3	2	679	1	0	0	0	0	1	0	0	0	11489	933	33	2	434	2	PANK1	10	91353679	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	175289	91353679	44181068	500	59401										
TNKS2	0	genome.wustl.edu	37	chr10	93590888	93590888	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcctctgcacgtggcatctGagaaagctcataatgatgtt	9	10	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	93590888	93590888	G	C	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	missense	c.1225	p.E409Q	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	197	0	0	151	100	39.84	-	-	-	C	93590888	G	C	93590888	3	2	679	1	0	0	0	0	1	0	0	0	16416	1291	45	2	1267	2	TNKS2	10	93590888	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2237209	93590888	41943859	501	59402										
MARCH5	0	genome.wustl.edu	37	chr10	94070920	94070920	+	Missense_Mutation	SNP	G	G	A													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggtttgttttgctactgatGaagatgatagaacagctgaa							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	94070920	94070920	G	A	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.64	p.E22K	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	74	0	0	48	36	42.86	-	-	-	A	94070920	G	A	94070920	3	1	679	1	0	0	0	0	1	0	0	0	9375	1291	45	2	70	2	MARCH5	10	94070920	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	480032	94070920	41463827	502	59403	446	2								
MARCH5	0	genome.wustl.edu	37	chr10	94070926	94070926	+	Missense_Mutation	SNP	G	G	C													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttttgctactgatgaagatGatagaacagctgaatgggtg							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	94070926	94070926	G	C	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.70	p.D24H	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	74	0	0	58	29	33.33	-	-	-	C	94070926	G	C	94070926	3	2	679	1	0	0	0	0	1	0	0	0	9375	1290	45	2	76	2	MARCH5	10	94070926	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6	94070926	41463821	503	59404	446	2								
MARCH5	0	genome.wustl.edu	37	chr10	94071041	94071041	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagaggaaacagtacagccaGagtggcatgtcctcagtgca	12	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	94071041	94071041	G	C	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.185	p.R62T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	50	0	0	32	31	49.21	-	-	-	C	94071041	G	C	94071041	3	2	679	1	0	0	0	0	1	0	0	0	9375	942	33	2	191	2	MARCH5	10	94071041	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	115	94071041	41463706	504	59405										
TCTN3	0	genome.wustl.edu	37	chr10	97453174	97453174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagaagatagcagtccctgtCgcagcagcaatttatatcgc	10	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	97453174	97453174	C	T	SNP	TCTN3	ENST00000371217	human	ensembl	69_37n	-1	known	missense	c.370	p.D124N	1.000	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977	16	0	0	27	10	27.03	-	-	-	T	97453174	C	T	97453174	3	4	679	1	0	0	0	0	1	0	0	0	15819	884	31	1	1559	1	TCTN3	10	97453174	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3382133	97453174	38081573	505	59406										
TM9SF3	0	genome.wustl.edu	37	chr10	98311125	98311125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgatggtctaaatacatctCcatgcacctgtttccatcca	5	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	98311125	98311125	C	G	SNP	TM9SF3	ENST00000371142	human	ensembl	69_37n	-1	known	missense	c.836	p.G279A	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147	104	0	0	77	40	34.19	-	-	-	G	98311125	C	G	98311125	3	3	679	1	0	0	0	0	1	0	0	0	16074	855	30	2	969	2	TM9SF3	10	98311125	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	857951	98311125	37223622	506	59407										
C10orf12	0	genome.wustl.edu	37	chr10	98744424	98744424	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agagtaaacgcaagagaacaGaaggcagcagccctccagat	11	10	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	98744424	98744424	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.3277	p.E1093K	0.969	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	45	0	0	24	17	41.46	-	-	-	A	98744424	G	A	98744424	3	1	679	1	0	0	0	0	1	0	0	0	1599	943	33	2	3279	2	C10orf12	10	98744424	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	433299	98744424	36790323	507	59408										
PGAM1	0	genome.wustl.edu	37	chr10	99190257	99190257	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtggtgaggacttggcgcctCaatgagcggcactatggggg	18	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	99190257	99190257	C	G	SNP	PGAM1	ENST00000334828	human	ensembl	69_37n	1	known	silent	c.261	p.L87	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM1	HGNC	ENSG00000171314	75	0	0	27	27	50	-	-	-	G	99190257	C	G	99190257	2	3	679	1	0	0	0	0	0	0	0	1	11847	813	29	2		2	PGAM1	10	99190257	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	445833	99190257	36344490	508	59409										
MMS19	0	genome.wustl.edu	37	chr10	99237135	99237135	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttcgcataaaattggtgatGatattgtagactgtgtgtcg	12	4	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	99237135	99237135	G	T	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	silent	c.462	p.I154	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	95	0	0	105	44	29.53	-	-	-	T	99237135	G	T	99237135	2	4	679	1	0	0	0	0	0	0	0	1	9744	1280	45	2		2	MMS19	10	99237135	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	46878	99237135	36297612	509	59410										
ENTPD7	0	genome.wustl.edu	37	chr10	101460771	101460771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcggtactaactcagagattCaagaatggcctcttttcatc	7	10	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	101460771	101460771	C	G	SNP	ENTPD7	ENST00000370489	human	ensembl	69_37n	1	known	missense	c.1377	p.F459L	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018	184	0	0	115	84	42.21	-	-	-	G	101460771	C	G	101460771	3	3	679	1	0	0	0	0	1	0	0	0	5181	825	29	2	1415	2	ENTPD7	10	101460771	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2223636	101460771	34073976	510	59411										
COX15	0	genome.wustl.edu	37	chr10	101483766	101483766	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccacaagctggcacaataaaGaaccagggctgatcccaggt	10	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	101483766	101483766	G	A	SNP	COX15	ENST00000016171	human	ensembl	69_37n	-1	known	missense	c.697	p.L233F	1.000	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	COX15	HGNC	ENSG00000014919	71	0	0	56	22	28.21	-	-	-	A	101483766	G	A	101483766	3	1	679	1	0	0	0	0	1	0	0	0	3794	942	33	2	625	2	COX15	10	101483766	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	22995	101483766	34050981	511	59412										
DNMBP	0	genome.wustl.edu	37	chr10	101715753	101715753	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggagctgaggacttgattgtCtgggtttgactacccttgaa	13	7	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	101715753	101715753	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	missense	c.1478	p.R493K	0.002	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	52	0	0	23	14	37.84	-	-	-	T	101715753	C	T	101715753	3	4	679	1	0	0	0	0	1	0	0	0	4709	913	32	2	3311	2	DNMBP	10	101715753	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	231987	101715753	33818994	512	59413										
CHUK	0	genome.wustl.edu	37	chr10	101967035	101967035	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctggaagcaaatggcccttCatatacagttttacttttat	6	8	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	101967035	101967035	C	T	SNP	CHUK	ENST00000370397	human	ensembl	69_37n	-1	known	missense	c.1183	p.E395K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341	34	0	0	46	33	41.25	-	-	-	T	101967035	C	T	101967035	3	4	679	1	0	0	0	0	1	0	0	0	3445	835	29	2	1098	2	CHUK	10	101967035	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	251282	101967035	33567712	513	59414										
MGEA5	0	genome.wustl.edu	37	chr10	103552685	103552685	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaagagatcatttgccccatCaattggcagcaaacgctgtg	9	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	103552685	103552685	C	G	SNP	MGEA5	ENST00000361464	human	ensembl	69_37n	-1	known	missense	c.2086	p.D696H	1.000	NULL	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	43	0	0	70	51	41.8	-	-	-	G	103552685	C	G	103552685	3	3	679	1	0	0	0	0	1	0	0	0	9626	826	29	2	684	2	MGEA5	10	103552685	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1585650	103552685	31982062	514	59415										
ARL3	0	genome.wustl.edu	37	chr10	104445662	104445662	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttcagtccttctgcaatttCagaggcaggggctgctgtga	13	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	104445662	104445662	C	G	SNP	ARL3	ENST00000260746	human	ensembl	69_37n	-1	known	missense	c.412	p.E138Q	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Small_GTPase,pfam_MIRO-like,pfam_ProtSyn_GTP-bd,pfam_ATPase_AAA_core,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,prints_Gprotein_alpha_su,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL3	HGNC	ENSG00000138175	61	0	0	38	31	44.93	-	-	-	G	104445662	C	G	104445662	3	3	679	1	0	0	0	0	1	0	0	0	939	835	29	2	144	2	ARL3	10	104445662	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	892977	104445662	31089085	515	59416										
SH3PXD2A	0	genome.wustl.edu	37	chr10	105362470	105362470	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctggcccttcccattccttCttggtgggacatgggggagt	14	11	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	105362470	105362470	C	G	SNP	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	missense	c.2505	p.K835N	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	59	0	0	19	9	32.14	-	-	-	G	105362470	C	G	105362470	3	3	679	1	0	0	0	0	1	0	0	0	14345	912	32	2	900	2	SH3PXD2A	10	105362470	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	916808	105362470	30172277	516	59417										
SMNDC1	0	genome.wustl.edu	37	chr10	112063272	112063272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatcttcattttctccatttCcagataatgcagcttcaact	3	11	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	112063272	112063272	C	T	SNP	SMNDC1	ENST00000369592	human	ensembl	69_37n	-1	known	missense	c.74	p.G25E	1.000	NULL	pfam_Survival_motor_neuron,smart_Tudor,pfscan_Tudor	-	no_errors	SMNDC1	HGNC	ENSG00000119953	41	0	0	77	52	40.31	-	-	-	T	112063272	C	T	112063272	3	4	679	1	0	0	0	0	1	0	0	0	14888	855	30	2	662	2	SMNDC1	10	112063272	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6700802	112063272	23471475	517	59418										
CASP7	0	genome.wustl.edu	37	chr10	115489239	115489239	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatgacccacacttccatgaGaagaagcagatcccctgtgt	9	12	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	115489239	115489239	G	C	SNP	CASP7	ENST00000369321	human	ensembl	69_37n	1	known	missense	c.951	p.E317D	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP7	HGNC	ENSG00000165806	41	0	0	29	15	34.09	-	-	-	C	115489239	G	C	115489239	3	2	679	1	0	0	0	0	1	0	0	0	2701	933	33	2	1055	2	CASP7	10	115489239	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3425967	115489239	20045508	518	59419										
KCNK18	0	genome.wustl.edu	37	chr10	118969418	118969418	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaggagtaactcgtgtcccGaactggtgttgggaagactc	14	8	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	118969418	118969418	G	C	SNP	KCNK18	ENST00000334549	human	ensembl	69_37n	1	known	missense	c.763	p.E255Q	1.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795	97	0	0	24	53	68.83	-	-	-	C	118969418	G	C	118969418	3	2	679	1	0	0	0	0	1	0	0	0	8119	1059	37	3	773	3	KCNK18	10	118969418	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3480179	118969418	16565329	519	59420										
FGFR2	0	genome.wustl.edu	37	chr10	123274822	123274822	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaagctgtaatctccttttCtcttccaggcgctagattgc	9	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	123274822	123274822	C	G	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1099	p.E367Q	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	49	0	0	52	20	27.4	-	-	-	G	123274822	C	G	123274822	3	3	679	1	0	0	0	0	1	0	0	0	5912	922	32	2	1513	2	FGFR2	10	123274822	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4305404	123274822	12259925	520	59421										
TACC2	0	genome.wustl.edu	37	chr10	123846402	123846402	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggagtggatgtcacccttCtccctgcacctcctgctcga	9	16	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	123846402	123846402	C	T	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.4387	p.L1463F	0.014	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	13	0	0	3	4	57.14	-	-	-	T	123846402	C	T	123846402	3	4	679	1	0	0	0	0	1	0	0	0	15594	913	32	2	4397	2	TACC2	10	123846402	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	571580	123846402	11688345	521	59422										
C10orf120	0	genome.wustl.edu	37	chr10	124459159	124459159	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaagcagaactcagatcctCttggcaacacgttggggctt	11	10	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	10	124459159	124459159	C	G	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	missense	c.148	p.E50Q	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	104	0	0	34	45	56.96	-	-	-	G	124459159	C	G	124459159	3	3	679	1	0	0	0	0	1	0	0	0	1600	922	32	2	871	2	C10orf120	10	124459159	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	612757	124459159	11075588	522	59423										
PSMD13	0	genome.wustl.edu	37	chr11	250838	250838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatgaagcccagcttctgagGaaaattcagttgttgtgcct	10	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	250838	250838	G	A	SNP	PSMD13	ENST00000526783	human	ensembl	69_37n	1	novel	missense	c.542	p.G181E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMD13	HGNC	ENSG00000185627	77	0	0	71	27	27.55	-	-	-	A	250838	G	A	250838	3	1	679	1	0	0	0	0	1	0	0	0	12776	1165	41	2	929	2	PSMD13	11	250838	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		250838	134755678	523	59424										
TMEM80	0	genome.wustl.edu	37	chr11	700696	700696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggattctagaagcagttcGgttatacctgggtgagtgga	16	5	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	700696	700696	G	A	SNP	TMEM80	ENST00000397510	human	ensembl	69_37n	1	known	missense	c.290	p.R97Q	0.019	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM80	HGNC	ENSG00000177042	79	0	0	99	52	34.44	-	-	-	A	700696	G	A	700696	3	1	679	1	0	0	0	0	1	0	0	0	16299	1116	39	1	304	1	TMEM80	11	700696	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	449858	700696	134305820	524	59425										
EFCAB4A	0	genome.wustl.edu	37	chr11	829410	829410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagcgaacccctgcaggactCccgaggagacctttgagtcg	13	13	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	829410	829410	C	T	SNP	EFCAB4A	ENST00000450448	human	ensembl	69_37n	1	known	missense	c.328	p.P110S	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB4A	HGNC	ENSG00000177685	10	0	0	13	6	31.58	-	-	-	T	829410	C	T	829410	3	4	679	1	0	0	0	0	1	0	0	0	4971	855	30	2	338	2	EFCAB4A	11	829410	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	128714	829410	134177106	525	59426										
OR52M1	0	genome.wustl.edu	37	chr11	4566888	4566888	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctctcctccggggtgttctCtacattggacctctgcctct	8	15	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	4566888	4566888	C	G	SNP	OR52M1	ENST00000360213	human	ensembl	69_37n	1	known	silent	c.468	p.L156	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52M1	HGNC	ENSG00000197790	154	0	0	55	43	43.88	-	-	-	G	4566888	C	G	4566888	2	3	679	1	0	0	0	0	0	0	0	1	11199	900	32	2		2	OR52M1	11	4566888	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3737478	4566888	130439628	526	59427										
OR51A7	0	genome.wustl.edu	37	chr11	4928765	4928765	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taaagacagagccctcgcttCatgagcccatgtattatttc	7	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	4928765	4928765	C	T	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	1	known	missense	c.166	p.H56Y	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	117	0	0	75	57	43.18	-	-	-	T	4928765	C	T	4928765	3	4	679	1	0	0	0	0	1	0	0	0	11161	826	29	2	168	2	OR51A7	11	4928765	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	361877	4928765	130077751	527	59428										
SPON1	0	genome.wustl.edu	37	chr11	14101542	14101542	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttatgggaattggtccgaGaagacacacccaaaggatta	10	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	14101542	14101542	G	C	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	69	0	0	57	29	33.72	-	-	-	C	14101542	G	C	14101542	1	2	679	0	1	0	0	0	0	0	0	0	15173	942	33	2		2	SPON1	11	14101542	RNA	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	9172777	14101542	120904974	528	59429										
INSC	0	genome.wustl.edu	37	chr11	15212255	15212255	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctcttcttaggcactggtGagaaaaattgatgcctcaga	9	9	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	15212255	15212255	G	A	SNP	INSC	ENST00000379554	human	ensembl	69_37n	1	known	silent	c.729	p.V243	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487	38	0	0	36	17	32.08	-	-	-	A	15212255	G	A	15212255	2	1	679	1	0	0	0	0	0	0	0	1	7818	1277	45	2		2	INSC	11	15212255	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1110713	15212255	119794261	529	59430										
ABCC8	0	genome.wustl.edu	37	chr11	17482056	17482056	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgggctggaagacgtcgttCtccttcccaaggtggtccac	12	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	17482056	17482056	C	G	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.990	p.E330D	0.977	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	37	0	0	10	9	47.37	-	-	-	G	17482056	C	G	17482056	3	3	679	1	0	0	0	0	1	0	0	0	58	912	32	2	3891	2	ABCC8	11	17482056	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2269801	17482056	117524460	530	59431										
KCNC1	0	genome.wustl.edu	37	chr11	17793649	17793649	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcctgcgggtcctgggccaCacgctccgagccagcaccaa	13	17	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	17793649	17793649	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	69_37n	1	known	silent	c.1008	p.H336	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	48	0	0	14	6	30	-	-	-	T	17793649	C	T	17793649	2	4	679	1	0	0	0	0	0	0	0	1	8068	477	17	4		4	KCNC1	11	17793649	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	311593	17793649	117212867	531	59432										
HTATIP2	0	genome.wustl.edu	37	chr11	20398235	20398235	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctaaaggagctgataaatCaagcaattttttatatctac	5	7	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	20398235	20398235	C	G	SNP	HTATIP2	ENST00000419348	human	ensembl	69_37n	1	known	nonsense	c.515	p.S172*	0.937	NULL	pfam_Semialdehyde_DH_NAD-bd	-	no_errors	HTATIP2	HGNC	ENSG00000109854	86	0	0	86	74	45.96	-	-	-	G	20398235	C	G	20398235	4	3	679	1	0	0	0	0	0	1	0	0	7486	838	29	2	628	2	HTATIP2	11	20398235	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2604586	20398235	114608281	532	59433										
CCDC34	0	genome.wustl.edu	37	chr11	27363058	27363058	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcctttgctgctttttcctCcatttctttattaatttttt	2	9	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	27363058	27363058	C	G	SNP	CCDC34	ENST00000328697	human	ensembl	69_37n	-1	known	missense	c.646	p.E216Q	0.998	NULL	NULL	-	no_errors	CCDC34	HGNC	ENSG00000109881	184	0	0	209	119	36.28	-	-	-	G	27363058	C	G	27363058	3	3	679	1	0	0	0	0	1	0	0	0	2833	864	30	2	487	2	CCDC34	11	27363058	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6964823	27363058	107643458	533	59434										
QSER1	0	genome.wustl.edu	37	chr11	32953474	32953474	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catcaaatggaattttaagtCatcatgaccctttgctacaa	5	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	32953474	32953474	C	G	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.283	p.H95D	0.757	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	157	0	0	94	58	38.16	-	-	-	G	32953474	C	G	32953474	3	3	679	1	0	0	0	0	1	0	0	0	12965	826	29	2	289	2	QSER1	11	32953474	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5590416	32953474	102053042	534	59435										
FBXO3	0	genome.wustl.edu	37	chr11	33795989	33795989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taagatgaggagcaggggatCggtgggcagcgactctaggg	19	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	33795989	33795989	C	T	SNP	FBXO3	ENST00000265651	human	ensembl	69_37n	-1	known	missense	c.55	p.D19N	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_ApaG_domain,pfam_F-box_dom_cyclin-like,superfamily_ApaG_domain,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cell_wall_assmbl_KNR4-like,pfscan_ApaG_domain,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO3	HGNC	ENSG00000110429	30	0	0	10	8	44.44	-	-	-	T	33795989	C	T	33795989	3	4	679	1	0	0	0	0	1	0	0	0	5785	884	31	1	1413	1	FBXO3	11	33795989	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	842515	33795989	101210527	535	59436										
ABTB2	0	genome.wustl.edu	37	chr11	34186251	34186251	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acctgtggccgtgggcagctGagtggctgaagcagttcatg	16	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	34186251	34186251	G	C	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	nonsense	c.1970	p.S657*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	88	0	0	19	14	41.18	-	-	-	C	34186251	G	C	34186251	4	2	679	1	0	0	0	0	0	1	0	0	103	1294	45	2	1143	2	ABTB2	11	34186251	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	390262	34186251	100820265	536	59437										
ACCS	0	genome.wustl.edu	37	chr11	44102734	44102734	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcttcttcctgcaggacttCgggatgtctgggctccgctt	12	12	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	44102734	44102734	C	T	SNP	ACCS	ENST00000263776	human	ensembl	69_37n	1	known	silent	c.975	p.F325	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCS	HGNC	ENSG00000110455	50	0	0	14	14	50	-	-	-	T	44102734	C	T	44102734	2	4	679	1	0	0	0	0	0	0	0	1	133	883	31	1		1	ACCS	11	44102734	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9916483	44102734	90903782	537	59438										
AMBRA1	0	genome.wustl.edu	37	chr11	46564007	46564007	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtctggggagcttccccactCaggctctgatccagctcctg	11	15	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	46564007	46564007	C	G	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	silent	c.1560	p.L520	0.936	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	35	0	0	18	14	43.75	-	-	-	G	46564007	C	G	46564007	2	3	679	1	0	0	0	0	0	0	0	1	565	813	29	2		2	AMBRA1	11	46564007	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2461273	46564007	88442509	538	59439										
CKAP5	0	genome.wustl.edu	37	chr11	46842741	46842741	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttaccttgtgttcacatttCtgatcaactggcagtttcaa	6	10	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	46842741	46842741	C	G	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.42	p.Q14H	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	91	0	0	115	52	31.14	-	-	-	G	46842741	C	G	46842741	3	3	679	1	0	0	0	0	1	0	0	0	3475	912	32	2	6228	2	CKAP5	11	46842741	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	278734	46842741	88163775	539	59440										
C11orf49	0	genome.wustl.edu	37	chr11	47183172	47183172	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atggctccactgaagagacaGacgagtcggagacttgagga	14	8	0	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	47183172	47183172	G	A	SNP	C11orf49	ENST00000378615	human	ensembl	69_37n	1	known	missense	c.997	p.D333N	0.997	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	16	0	0	4	5	55.56	-	-	-	A	47183172	G	A	47183172	3	1	679	1	0	0	0	0	1	0	0	0	1656	942	33	2	1035	2	C11orf49	11	47183172	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	340431	47183172	87823344	540	59441										
MTCH2	0	genome.wustl.edu	37	chr11	47648668	47648668	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaataactcttcatttcattCatggtagaaacctaaaatag	5	7	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	47648668	47648668	C	G	SNP	MTCH2	ENST00000302503	human	ensembl	69_37n	-1	known	missense	c.645	p.M215I	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH2	HGNC	ENSG00000109919	45	0	0	89	44	33.08	-	-	-	G	47648668	C	G	47648668	3	3	679	1	0	0	0	0	1	0	0	0	9986	826	29	2	282	2	MTCH2	11	47648668	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	465496	47648668	87357848	541	59442										
OR5D14	0	genome.wustl.edu	37	chr11	55563652	55563652	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttttcagcttcgccaccttCaatgagatgtgtacactact	6	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	55563652	55563652	C	T	SNP	OR5D14	ENST00000335605	human	ensembl	69_37n	1	known	silent	c.621	p.F207	0.177	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113	110	0	0	104	82	44.09	-	-	-	T	55563652	C	T	55563652	2	4	679	1	0	0	0	0	0	0	0	1	11228	825	29	2		2	OR5D14	11	55563652	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7914984	55563652	79442864	542	59443										
OR10AG1	0	genome.wustl.edu	37	chr11	55735721	55735721	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctgagtccaaatgtccatGagcattcttgggataatgat	9	7	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	55735721	55735721	G	C	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	0.009	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	41	0	0	41	29	41.43	-	-	-	C	55735721	G	C	55735721	2	2	679	1	0	0	0	0	0	0	0	1	10970	1277	45	2		2	OR10AG1	11	55735721	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	172069	55735721	79270795	543	59444										
OR8J1	0	genome.wustl.edu	37	chr11	56127883	56127883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctcaccagtgttgactctcGacttcaaacccccatgtact	5	16	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	56127883	56127883	G	A	SNP	OR8J1	ENST00000303039	human	ensembl	69_37n	1	known	missense	c.161	p.R54Q	0.012	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8J1	HGNC	ENSG00000172487	144	0	0	93	80	46.24	-	-	-	A	56127883	G	A	56127883	3	1	679	1	0	0	0	0	1	0	0	0	11314	1058	37	1	163	1	OR8J1	11	56127883	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	392162	56127883	78878633	544	59445										
OR5AK2	0	genome.wustl.edu	37	chr11	56756549	56756549	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actcatcaacacagattccaGatttcaaacactcacgtact	3	13	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	56756549	56756549	G	C	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	1	known	missense	c.161	p.R54T	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	136	0	0	81	74	47.74	-	-	-	C	56756549	G	C	56756549	3	2	679	1	0	0	0	0	1	0	0	0	11215	942	33	2	163	2	OR5AK2	11	56756549	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	628666	56756549	78249967	545	59446										
CTNND1	0	genome.wustl.edu	37	chr11	57564298	57564298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgggccccaaccccaggttCgggtaggtgggagcagcgtg	17	11	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	57564298	57564298	C	T	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	missense	c.790	p.R264W	0.942	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	36	0	0	26	16	38.1	-	-	-	T	57564298	C	T	57564298	3	4	679	1	0	0	0	0	1	0	0	0	4051	875	31	1	804	1	CTNND1	11	57564298	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	807749	57564298	77442218	546	59447										
FAM111B	0	genome.wustl.edu	37	chr11	58877147	58877147	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtcatttagcgctatggaaGatgaccagaggactagacct	11	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	58877147	58877147	G	C	SNP	FAM111B	ENST00000343597	human	ensembl	69_37n	1	known	missense	c.49	p.D17H	0.017	NULL	superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111B	HGNC	ENSG00000189057	40	0	0	43	47	52.22	-	-	-	C	58877147	G	C	58877147	3	2	679	1	0	0	0	0	1	0	0	0	5440	942	33	2	51	2	FAM111B	11	58877147	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1312849	58877147	76129369	547	59448										
OR5A1	0	genome.wustl.edu	37	chr11	59211132	59211132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagctccctgatccaggccaGctccatatttaggcttcact	8	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	59211132	59211132	G	A	SNP	OR5A1	ENST00000302030	human	ensembl	69_37n	1	known	missense	c.491	p.S164N	0.040	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A1	HGNC	ENSG00000172320	138	0	0	73	46	38.66	-	-	-	A	59211132	G	A	59211132	3	1	679	1	0	0	0	0	1	0	0	0	11212	971	34	4	493	4	OR5A1	11	59211132	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	333985	59211132	75795384	548	59449										
NXF1	0	genome.wustl.edu	37	chr11	62567905	62567905	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agggagtttccatcgagccaGagctcttctagcttcagccc	10	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	62567905	62567905	G	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	silent	c.960	p.L320	0.998	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	140	0	0	82	42	33.87	-	-	-	C	62567905	G	C	62567905	2	2	679	1	0	0	0	0	0	0	0	1	10855	929	33	2		2	NXF1	11	62567905	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3356773	62567905	72438611	549	59450										
EFEMP2	0	genome.wustl.edu	37	chr11	65635373	65635373	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgagtttccagcacggatctGaaaggcattgtaggcaccgg	13	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	65635373	65635373	G	C	SNP	EFEMP2	ENST00000524408	human	ensembl	69_37n	-1	known	nonsense	c.5	p.S2*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EFEMP2	HGNC	ENSG00000172638	41	0	0	25	13	34.21	-	-	-	C	65635373	G	C	65635373	4	2	679	1	0	0	0	0	0	1	0	0	4977	1299	45	2	210	2	EFEMP2	11	65635373	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3067468	65635373	69371143	550	59451										
C11orf80	0	genome.wustl.edu	37	chr11	66605863	66605863	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaccctagaaaaaaaggactCagcccagggcactgaggacg	11	11	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	66605863	66605863	C	G	SNP	C11orf80	ENST00000360962	human	ensembl	69_37n	1	known	nonsense	c.1694	p.S565*	0.003	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715	70	0	0	57	29	33.72	-	-	-	G	66605863	C	G	66605863	4	3	679	1	0	0	0	0	0	1	0	0	1675	838	29	2	1752	2	C11orf80	11	66605863	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	970490	66605863	68400653	551	59452										
AIP	0	genome.wustl.edu	37	chr11	67250641	67250641	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaaggaggatggcggatatCatcgcaagactccgggagga	17	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	67250641	67250641	C	T	SNP	AIP	ENST00000279146	human	ensembl	69_37n	1	known	silent	c.12	p.I4	0.997	NULL	pfam_PPIase_FKBP_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	AIP	HGNC	ENSG00000110711	34	0	0	28	13	31.71	-	-	-	T	67250641	C	T	67250641	2	4	679	1	0	0	0	0	0	0	0	1	435	816	29	2		2	AIP	11	67250641	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	644778	67250641	67755875	552	59453										
LRP5	0	genome.wustl.edu	37	chr11	68157416	68157416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaacttggatgggcaggagCggcgtgtgctggtcaatgcc	16	10	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	68157416	68157416	C	T	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	missense	c.1480	p.R494W	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	71	0	0	50	42	45.16	-	-	-	T	68157416	C	T	68157416	3	4	679	1	0	0	0	0	1	0	0	0	9026	759	27	1	1506	1	LRP5	11	68157416	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	906775	68157416	66849100	553	59454										
MRGPRF	0	genome.wustl.edu	37	chr11	68773715	68773715	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagagttccggggcctcgctCaggccagggcacatctgcgc	14	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	68773715	68773715	C	T	SNP	MRGPRF	ENST00000309099	human	ensembl	69_37n	-1	known	silent	c.63	p.L21	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRF	HGNC	ENSG00000172935	16	0	0	7	5	41.67	-	-	-	T	68773715	C	T	68773715	2	4	679	1	0	0	0	0	0	0	0	1	9837	813	29	2		2	MRGPRF	11	68773715	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	616299	68773715	66232801	554	59455										
ANO1	0	genome.wustl.edu	37	chr11	70007759	70007759	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acggagaaaagctttgaggaGaggctgatcttcaaggcttt	13	6	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	70007759	70007759	G	C	SNP	ANO1	ENST00000355303	human	ensembl	69_37n	1	known	missense	c.1812	p.E604D	0.954	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620	77	0	0	92	60	39.22	-	-	-	C	70007759	G	C	70007759	3	2	679	1	0	0	0	0	1	0	0	0	694	933	33	2	1882	2	ANO1	11	70007759	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1234044	70007759	64998757	555	59456										
NUMA1	0	genome.wustl.edu	37	chr11	71725099	71725099	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgggaggcccgctcagcctcGaggctgcgttccaggctgtc	15	15	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	71725099	71725099	G	C	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	silent	c.3450	p.L1150	0.004	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	20	0	0	9	8	47.06	-	-	-	C	71725099	G	C	71725099	2	2	679	1	0	0	0	0	0	0	0	1	10823	1045	37	3		3	NUMA1	11	71725099	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1717340	71725099	63281417	556	59457										
RAB6A	0	genome.wustl.edu	37	chr11	73427362	73427362	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catcacttcctctttctgttCtgacatcatcaatccacttt	2	14	6	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	73427362	73427362	C	G	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.335	p.R112T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	84	0	0	127	62	32.8	-	-	-	G	73427362	C	G	73427362	3	3	679	1	0	0	0	0	1	0	0	0	13034	913	32	2	307	2	RAB6A	11	73427362	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1702263	73427362	61579154	557	59458										
RAB6A	0	genome.wustl.edu	37	chr11	73429838	73429838	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caatatacctacttgtgataTcgtaaactactacagctgca	5	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	73429838	73429838	T	G	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.281	p.D94A	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	57	0	0	54	41	43.16	-	-	-	G	73429838	T	G	73429838	3	3	679	1	0	0	0	0	1	0	0	0	13034	1435	50	5	475	5	RAB6A	11	73429838	Missense_Mutation	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	2476	73429838	61576678	558	59459										
PRKRIR	0	genome.wustl.edu	37	chr11	76063380	76063382	+	In_Frame_Del	DEL	CTG	CTG	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacaggtaggtgctcttcccCtgctatgtccactacatcgt							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	76063380	76063382	CTG	-	DEL	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	in_frame_del	c.814_812	p.A271in_frame_del	0.989:0.902:0.999	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	37	0	0	29	12	29.27	-	-	-	-	76063382	CTG	-	76063380	7	5	679	1	0	1	0	1	0	0	0	0	12607	681	24	0	1475	0	PRKRIR	11	76063380	In_Frame_Del	DEL	CTG	TCGA-D8-A1JA-01A-11D-A13L-09	2633542	76063380	58943136	559	59460										
ME3	0	genome.wustl.edu	37	chr11	86198464	86198464	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgtttcaggccgatgtacaGagggtctctgagcagctcct	13	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	86198464	86198464	G	C	SNP	ME3	ENST00000359636	human	ensembl	69_37n	-1	known	missense	c.724	p.L242V	0.990	pfam_Malic_N	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376	81	0	0	30	17	36.17	-	-	-	C	86198464	G	C	86198464	3	2	679	1	0	0	0	0	1	0	0	0	9490	933	33	2	1126	2	ME3	11	86198464	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	10135084	86198464	48808052	560	59461										
TMEM135	0	genome.wustl.edu	37	chr11	87020587	87020587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgtggggtacttgatccagtGctgcctccgaatcccttctg	11	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	87020587	87020587	G	A	SNP	TMEM135	ENST00000305494	human	ensembl	69_37n	1	known	missense	c.809	p.C270Y	1.000	NULL	NULL	-	no_errors	TMEM135	HGNC	ENSG00000166575	65	0	0	38	30	44.12	-	-	-	A	87020587	G	A	87020587	3	1	679	1	0	0	0	0	1	0	0	0	16146	1319	46	4	847	4	TMEM135	11	87020587	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	822123	87020587	47985929	561	59462										
NOX4	0	genome.wustl.edu	37	chr11	89075298	89075298	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaatgcctccagccacgcaGaggctgacctcatagttcag	9	15	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	89075298	89075298	G	A	SNP	NOX4	ENST00000413594	human	ensembl	69_37n	-1	known	silent	c.1344	p.L448	0.990	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991	45	0	0	33	19	36.54	-	-	-	A	89075298	G	A	89075298	2	1	679	1	0	0	0	0	0	0	0	1	10630	929	33	2		2	NOX4	11	89075298	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2054711	89075298	45931218	562	59463										
TRIM49	0	genome.wustl.edu	37	chr11	89537238	89537238	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcacttacccggtgttcctCagcagcccactcaatgggac	8	15	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	89537238	89537238	C	G	SNP	TRIM49	ENST00000329758	human	ensembl	69_37n	-1	known	missense	c.400	p.E134Q	0.012	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49	HGNC	ENSG00000168930	23	0	0	18	16	45.71	-	-	-	G	89537238	C	G	89537238	3	3	679	1	0	0	0	0	1	0	0	0	16620	835	29	2	982	2	TRIM49	11	89537238	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	461940	89537238	45469278	563	59464										
NAALAD2	0	genome.wustl.edu	37	chr11	89907016	89907016	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccagccctgatgatgggtttGagagtaaatcactgtatgaa	11	7	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	89907016	89907016	G	C	SNP	NAALAD2	ENST00000534061	human	ensembl	69_37n	1	known	missense	c.1435	p.E479Q	0.996	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616	62	0	0	79	45	36.29	-	-	-	C	89907016	G	C	89907016	3	2	679	1	0	0	0	0	1	0	0	0	10200	1291	45	2	1489	2	NAALAD2	11	89907016	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	369778	89907016	45099500	564	59465										
AMOTL1	0	genome.wustl.edu	37	chr11	94563282	94563282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcaagtctaccaccaagcgaGaatcgctggacaaggccatg	10	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	94563282	94563282	G	C	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.1480	p.E494Q	1.000	prints_Angiomotin	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	30	0	0	25	23	47.92	-	-	-	C	94563282	G	C	94563282	3	2	679	1	0	0	0	0	1	0	0	0	583	943	33	2	1498	2	AMOTL1	11	94563282	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4656266	94563282	40443234	565	59466										
KDM4D	0	genome.wustl.edu	37	chr11	94730615	94730615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tatttcatccaaccaaagaaGagtttaatgattttgataaa	5	5	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	94730615	94730615	G	A	SNP	KDM4D	ENST00000335080	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	1.000	pfam_TF_JmjN,smart_TF_JmjN,pfscan_TF_JmjN	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280	56	0	0	50	19	27.54	-	-	-	A	94730615	G	A	94730615	3	1	679	1	0	0	0	0	1	0	0	0	8185	943	33	2	81	2	KDM4D	11	94730615	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	167333	94730615	40275901	566	59467										
DYNC2H1	0	genome.wustl.edu	37	chr11	103128449	103128449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagtttggctgcttttctccGacttttccaacgagctctac	7	12	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	103128449	103128449	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.10595	p.R3532Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	83	0	0	96	57	37.25	-	-	-	A	103128449	G	A	103128449	3	1	679	1	0	0	0	0	1	0	0	0	4881	1058	37	1	10873	1	DYNC2H1	11	103128449	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8397834	103128449	31878067	567	59468										
CASP5	0	genome.wustl.edu	37	chr11	104877890	104877890	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccacgcgattctttcgcaaaGagtctaccaagatcagggcc	9	13	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	104877890	104877890	G	C	SNP	CASP5	ENST00000393141	human	ensembl	69_37n	-1	known	missense	c.392	p.S131C	0.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	155	0	0	100	83	45.11	-	-	-	C	104877890	G	C	104877890	3	2	679	1	0	0	0	0	1	0	0	0	2699	942	33	2	979	2	CASP5	11	104877890	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1749441	104877890	30128626	568	59469										
ALKBH8	0	genome.wustl.edu	37	chr11	107396319	107396319	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaattttctgcacgtgattCtaaaaacaatagtcaaaaaa	4	7	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	107396319	107396319	C	G	SNP	ALKBH8	ENST00000417449	human	ensembl	69_37n	-1	known	splice_site	c.888-1	e9-1	1.000	-	-	-	no_errors	ALKBH8	HGNC	ENSG00000137760	47	0	0	13	15	53.57	-	-	-	G	107396319	C	G	107396319	5	3	679	1	0	0	0	0	0	0	1	0	533	927	32	2	1132	2	ALKBH8	11	107396319	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2518429	107396319	27610197	569	59470										
HTR3A	0	genome.wustl.edu	37	chr11	113857358	113857358	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caacagtggcgagagggtctCtttcaagattacactcctcc	9	12	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	113857358	113857358	C	T	SNP	HTR3A	ENST00000355556	human	ensembl	69_37n	1	known	missense	c.842	p.S281F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736	89	0	0	11	29	72.5	-	-	-	T	113857358	C	T	113857358	3	4	679	1	0	0	0	0	1	0	0	0	7498	913	32	2	894	2	HTR3A	11	113857358	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	6461039	113857358	21149158	570	59471										
DDX6	0	genome.wustl.edu	37	chr11	118627886	118627886	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agttttatactcacctgcctCattttagcatgaatatagaa	5	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	118627886	118627886	C	G	SNP	DDX6	ENST00000264018	human	ensembl	69_37n	-1	known	missense	c.1104	p.M368I	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX6	HGNC	ENSG00000110367	35	0	0	20	27	57.45	-	-	-	G	118627886	C	G	118627886	3	3	679	1	0	0	0	0	1	0	0	0	4408	826	29	2	363	2	DDX6	11	118627886	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4770528	118627886	16378630	571	59472										
NLRX1	0	genome.wustl.edu	37	chr11	119044705	119044705	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcttagagcatctcaacctCgacttccggctggcaggcac	11	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	119044705	119044705	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	silent	c.747	p.L249	0.079	pfscan_NACHT_NTPase	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	68	0	0	14	27	65.85	-	-	-	T	119044705	C	T	119044705	2	4	679	1	0	0	0	0	0	0	0	1	10557	871	31	1		1	NLRX1	11	119044705	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	416819	119044705	15961811	572	59473										
APLP2	0	genome.wustl.edu	37	chr11	129993576	129993576	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgttggtacttcgacctctCcaagggaaagtgcgtgcgct	12	11	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	129993576	129993576	C	G	SNP	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	missense	c.992	p.S331C	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	74	0	0	63	10	13.7	-	-	-	G	129993576	C	G	129993576	3	3	679	1	0	0	0	0	1	0	0	0	781	855	30	2	1018	2	APLP2	11	129993576	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	10948871	129993576	5012940	573	59474										
ST14	0	genome.wustl.edu	37	chr11	130078484	130078484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaaccggcagagtacagctCcatggtgcggcccatctgcc	12	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	11	130078484	130078484	C	T	SNP	ST14	ENST00000278742	human	ensembl	69_37n	1	known	missense	c.2174	p.S725F	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_CUB,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ST14	HGNC	ENSG00000149418	30	0	0	29	18	38.3	-	-	-	T	130078484	C	T	130078484	3	4	679	1	0	0	0	0	1	0	0	0	15302	855	30	2	2240	2	ST14	11	130078484	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	84908	130078484	4928032	574	59475										
KDM5A	0	genome.wustl.edu	37	chr12	465607	465607	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaattttaccttctttatCttttgttcccattgccaagc	3	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	465607	465607	C	G	SNP	KDM5A	ENST00000399788	human	ensembl	69_37n	-1	known	missense	c.769	p.D257H	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	82	0	0	99	71	41.76	-	-	-	G	465607	C	G	465607	3	3	679	1	0	0	0	0	1	0	0	0	8186	913	32	2	4395	2	KDM5A	12	465607	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		465607	133386288	575	59476										
TSPAN9	0	genome.wustl.edu	37	chr12	3388205	3388205	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctagcagagctgatcttactCatcctcttctttgtctacat	5	12	5	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	3388205	3388205	C	T	SNP	TSPAN9	ENST00000011898	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.999	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN9	HGNC	ENSG00000011105	93	0	0	108	66	37.93	-	-	-	T	3388205	C	T	3388205	2	4	679	1	0	0	0	0	0	0	0	1	16750	813	29	2		2	TSPAN9	12	3388205	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2922598	3388205	130463690	576	59477										
PZP	0	genome.wustl.edu	37	chr12	9354925	9354925	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggatgcttaccagttcatttCgagggcgaaaattttcatcc	9	9	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	9354925	9354925	C	G	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.470	p.R157P	0.024	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	42	0	0	43	27	38.03	-	-	-	G	9354925	C	G	9354925	3	3	679	1	0	0	0	0	1	0	0	0	12952	884	31	3	4110	3	PZP	12	9354925	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5966720	9354925	124496970	577	59478										
GRIN2B	0	genome.wustl.edu	37	chr12	13906514	13906514	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacgtgtagccatagccagtCagccctactgagttggccac	10	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	13906514	13906514	C	T	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.747	p.L249	1.000	pfam_ANF_lig-bd_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	194	0	0	47	33	41.25	-	-	-	T	13906514	C	T	13906514	2	4	679	1	0	0	0	0	0	0	0	1	6831	813	29	2		2	GRIN2B	12	13906514	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4551589	13906514	119945381	578	59479										
SLCO1B1	0	genome.wustl.edu	37	chr12	21294573	21294573	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcagagaataagaaaacaaGatactgcaatggattgaagg	10	4	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	21294573	21294573	G	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	69_37n	1	known	missense	c.65	p.R22T	0.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	51	0	0	62	21	25.3	-	-	-	C	21294573	G	C	21294573	3	2	679	1	0	0	0	0	1	0	0	0	14812	942	33	2	67	2	SLCO1B1	12	21294573	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7388059	21294573	112557322	579	59480										
PYROXD1	0	genome.wustl.edu	37	chr12	21615684	21615684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgttgtttagtttgatctagGagaagatggtggcctgaaag	14	3	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	21615684	21615684	G	C	SNP	PYROXD1	ENST00000240651	human	ensembl	69_37n	1	known	missense	c.1004	p.G335A	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	PYROXD1	HGNC	ENSG00000121350	62	0	0	73	41	35.96	-	-	-	C	21615684	G	C	21615684	3	2	679	1	0	0	0	0	1	0	0	0	12949	1174	41	2	1042	2	PYROXD1	12	21615684	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	321111	21615684	112236211	580	59481										
ABCC9	0	genome.wustl.edu	37	chr12	22063124	22063124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcccatagattaggacacagGaacaaaaaccacatgagttg	9	9	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	22063124	22063124	G	C	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.1287	p.F429L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	39	0	0	49	38	43.68	-	-	-	C	22063124	G	C	22063124	3	2	679	1	0	0	0	0	1	0	0	0	59	1165	41	2	3628	2	ABCC9	12	22063124	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	447440	22063124	111788771	581	59482										
CMAS	0	genome.wustl.edu	37	chr12	22213810	22213810	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgcgagctgaacatagtgtGgatatagatgtggatattga	13	3	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	22213810	22213810	G	T	SNP	CMAS	ENST00000229329	human	ensembl	69_37n	1	known	silent	c.738	p.V246	1.000	pfam_Cytidylyl_trans	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726	31	0	0	43	27	38.57	-	-	-	T	22213810	G	T	22213810	2	4	679	1	0	0	0	0	0	0	0	1	3605	1335	47	4		4	CMAS	12	22213810	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	150686	22213810	111638085	582	59483										
SOX5	0	genome.wustl.edu	37	chr12	23728609	23728609	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acttacctattgtgctaactCtggctgaaggactagctaac	8	10	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	23728609	23728609	C	G	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.1328	p.R443T	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	87	0	0	66	44	40	-	-	-	G	23728609	C	G	23728609	3	3	679	1	0	0	0	0	1	0	0	0	15043	913	32	2	987	2	SOX5	12	23728609	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1514799	23728609	110123286	583	59484										
FGD4	0	genome.wustl.edu	37	chr12	32793347	32793347	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctgcagacagtgaggaactGaagcagaagtggctgaaagt	15	6	0	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	32793347	32793347	G	A	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	silent	c.2181	p.L727	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	87	0	0	25	25	50	-	-	-	A	32793347	G	A	32793347	2	1	679	1	0	0	0	0	0	0	0	1	5881	1277	45	2		2	FGD4	12	32793347	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	9064738	32793347	101058548	584	59485										
CNTN1	0	genome.wustl.edu	37	chr12	41419117	41419117	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gacctccaagtgacatgattGaggctttcaccaagaaagca	9	10	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	41419117	41419117	G	C	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2689	p.E897Q	0.957	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	33	0	0	13	17	56.67	-	-	-	C	41419117	G	C	41419117	3	2	679	1	0	0	0	0	1	0	0	0	3670	1291	45	2	2767	2	CNTN1	12	41419117	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8625770	41419117	92432778	585	59486										
ANO6	0	genome.wustl.edu	37	chr12	45740823	45740823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaggaaaagacaagcatacGaatctaaccttatctgtcat	7	8	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	45740823	45740823	G	A	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.298	p.E100K	0.998	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	86	0	0	70	33	32.04	-	-	-	A	45740823	G	A	45740823	3	1	679	1	0	0	0	0	1	0	0	0	700	1059	37	1	332	1	ANO6	12	45740823	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4321706	45740823	88111072	586	59487										
SLC38A1	0	genome.wustl.edu	37	chr12	46591533	46591533	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgagttcctttatctccatcCtggtctgtgatttttaaata	6	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	46591533	46591533	C	G	SNP	SLC38A1	ENST00000398637	human	ensembl	69_37n	-1	known	missense	c.1332	p.Q444H	0.897	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371	267	0	0	137	68	33.17	-	-	-	G	46591533	C	G	46591533	3	3	679	1	0	0	0	0	1	0	0	0	14690	680	24	4	139	4	SLC38A1	12	46591533	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	850710	46591533	87260362	587	59488										
SENP1	0	genome.wustl.edu	37	chr12	48468567	48468567	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtaaatctctctttcttcttCttgaactgtctataagaaaa	4	8	6	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	48468567	48468567	C	T	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.562	p.E188K	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	225	0	0	161	222	57.81	-	-	-	T	48468567	C	T	48468567	3	4	679	1	0	0	0	0	1	0	0	0	14134	922	32	2	1417	2	SENP1	12	48468567	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1877034	48468567	85383328	588	59489										
SENP1	0	genome.wustl.edu	37	chr12	48477419	48477419	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctgagttttcttggggctCaaaagacttcgacgacatga	10	9	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	48477419	48477419	C	G	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.507	p.L169F	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	67	0	0	113	42	27.1	-	-	-	G	48477419	C	G	48477419	3	3	679	1	0	0	0	0	1	0	0	0	14134	825	29	2	1476	2	SENP1	12	48477419	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8852	48477419	85374476	589	59490										
H1FNT	0	genome.wustl.edu	37	chr12	48723142	48723142	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggcgggagtggggccatggCtgaggcgcctgggcccagtg	21	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	48723142	48723142	C	G	SNP	H1FNT	ENST00000335017	human	ensembl	69_37n	1	known	missense	c.68	p.A23G	0.924	NULL	NULL	-	no_errors	H1FNT	HGNC	ENSG00000187166	21	0	0	4	5	55.56	-	-	-	G	48723142	C	G	48723142	3	3	679	1	0	0	0	0	1	0	0	0	6972	797	28	4	70	4	H1FNT	12	48723142	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	245723	48723142	85128753	590	59491										
SCN8A	0	genome.wustl.edu	37	chr12	52156412	52156412	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccctcagtttaatggaactGagtctagcagacgtggaggg	13	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	52156412	52156412	G	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	silent	c.2496	p.L832	0.984	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	82	0	0	76	44	36.67	-	-	-	C	52156412	G	C	52156412	2	2	679	1	0	0	0	0	0	0	0	1	14012	1277	45	2		2	SCN8A	12	52156412	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3433270	52156412	81695483	591	59492										
PA2G4	0	genome.wustl.edu	37	chr12	56504429	56504429	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgaaaacttcacgtgccttCttcagtgaggtggaaaggcg	12	8	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	56504429	56504429	C	G	SNP	PA2G4	ENST00000303305	human	ensembl	69_37n	1	known	missense	c.795	p.F265L	1.000	superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515	68	0	0	50	27	34.62	-	-	-	G	56504429	C	G	56504429	3	3	679	1	0	0	0	0	1	0	0	0	11434	912	32	2	829	2	PA2G4	12	56504429	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4348017	56504429	77347466	592	59493										
MYL6	0	genome.wustl.edu	37	chr12	56554074	56554074	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agatgctggtggcagggcatGaggacagcaatggttgtatc	16	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	56554074	56554074	G	C	SNP	MYL6	ENST00000547649	human	ensembl	69_37n	1	known	missense	c.397	p.E133Q	1.000	smart_EF_hand_Ca-bd	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL6	HGNC	ENSG00000092841	82	0	0	36	26	41.94	-	-	-	C	56554074	G	C	56554074	3	2	679	1	0	0	0	0	1	0	0	0	10123	1291	45	2	415	2	MYL6	12	56554074	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	49645	56554074	77297821	593	59494										
SHMT2	0	genome.wustl.edu	37	chr12	57626534	57626534	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctggcagacatggcccacatCagtggcctggtggctgccaa	13	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	57626534	57626534	C	T	SNP	SHMT2	ENST00000557529	human	ensembl	69_37n	1	putative	nonsense	c.163	p.Q55*	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SHMT2	HGNC	ENSG00000182199	20	0	0	9	8	47.06	-	-	-	T	57626534	C	T	57626534	4	4	679	1	0	0	0	0	0	1	0	0	14375	816	29	2	791	2	SHMT2	12	57626534	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1072460	57626534	76225361	594	59495										
PPM1H	0	genome.wustl.edu	37	chr12	63226010	63226010	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttcttcacagtgagcacctCacagctggcttggtcttcat	8	13	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	63226010	63226010	C	T	SNP	PPM1H	ENST00000228705	human	ensembl	69_37n	-1	known	missense	c.295	p.E99K	1.000	superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1H	HGNC	ENSG00000111110	58	0	0	35	23	39.66	-	-	-	T	63226010	C	T	63226010	3	4	679	1	0	0	0	0	1	0	0	0	12418	835	29	2	1285	2	PPM1H	12	63226010	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5599476	63226010	70625885	595	59496										
IL22	0	genome.wustl.edu	37	chr12	68642599	68642599	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcaaatgcaggcatttctcaGagacataaacagcaaatcca	6	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	68642599	68642599	G	C	SNP	IL22	ENST00000328087	human	ensembl	69_37n	-1	known	missense	c.520	p.L174V	0.449	superfamily_4_helix_cytokine-like_core,prints_Interleukin-22,prints_Interleukin-24	superfamily_4_helix_cytokine-like_core,prints_Interleukin-22,prints_Interleukin-24	-	no_errors	IL22	HGNC	ENSG00000127318	248	0	0	85	63	42.57	-	-	-	C	68642599	G	C	68642599	3	2	679	1	0	0	0	0	1	0	0	0	7726	933	33	2	23	2	IL22	12	68642599	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5416589	68642599	65209296	596	59497										
MDM1	0	genome.wustl.edu	37	chr12	68707513	68707513	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaagccggcctcctttttctGaggatacagaagaatctgac	10	10	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	68707513	68707513	G	C	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	nonsense	c.1520	p.S507*	1.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	33	0	0	23	13	36.11	-	-	-	C	68707513	G	C	68707513	4	2	679	1	0	0	0	0	0	1	0	0	9483	1294	45	2	644	2	MDM1	12	68707513	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	64914	68707513	65144382	597	59498										
NUP107	0	genome.wustl.edu	37	chr12	69126506	69126506	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaacaaggcaatgcaattatGagaaaattcttgggtatagt	9	4	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	69126506	69126506	G	A	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	missense	c.2088	p.M696I	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	34	0	0	54	22	28.95	-	-	-	A	69126506	G	A	69126506	3	1	679	1	0	0	0	0	1	0	0	0	10826	1290	45	2	2178	2	NUP107	12	69126506	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	418993	69126506	64725389	598	59499										
RAB21	0	genome.wustl.edu	37	chr12	72164419	72164419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcattgggtccaatttactaCagagattcaaatggagcgat	10	7	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	72164419	72164419	C	T	SNP	RAB21	ENST00000261263	human	ensembl	69_37n	1	known	silent	c.267	p.Y89	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB21	HGNC	ENSG00000080371	74	0	0	64	34	34.69	-	-	-	T	72164419	C	T	72164419	2	4	679	1	0	0	0	0	0	0	0	1	12991	489	17	4		4	RAB21	12	72164419	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3037913	72164419	61687476	599	59500										
TBC1D15	0	genome.wustl.edu	37	chr12	72274276	72274276	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttcagttgtagaatggactCaggccccaaaagaaagaggt	12	7	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	72274276	72274276	C	G	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	missense	c.232	p.Q78E	0.998	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	34	0	0	30	13	30.23	-	-	-	G	72274276	C	G	72274276	3	3	679	1	0	0	0	0	1	0	0	0	15696	827	29	2	370	2	TBC1D15	12	72274276	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	109857	72274276	61577619	600	59501										
KCNC2	0	genome.wustl.edu	37	chr12	75444403	75444403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcatggctattgtcagcactCcagccagagcacacagggct	11	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	75444403	75444403	C	T	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	missense	c.1382	p.G461E	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	70	0	0	49	27	35.53	-	-	-	T	75444403	C	T	75444403	3	4	679	1	0	0	0	0	1	0	0	0	8069	855	30	2	612	2	KCNC2	12	75444403	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3170127	75444403	58407492	601	59502										
TSPAN19	0	genome.wustl.edu	37	chr12	85411253	85411253	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acctcaaggtaagttgcattCagtggctcatcacaaaacca	7	11	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	85411253	85411253	C	T	SNP	TSPAN19	ENST00000532498	human	ensembl	69_37n	-1	known	silent	c.576	p.L192	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN19	HGNC	ENSG00000231738	66	0	0	71	34	32.38	-	-	-	T	85411253	C	T	85411253	2	4	679	1	0	0	0	0	0	0	0	1	16739	813	29	2		2	TSPAN19	12	85411253	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9966850	85411253	48440642	602	59503										
SCYL2	0	genome.wustl.edu	37	chr12	100707305	100707305	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtaagaccagatgcagatCaaatgacaaaggtgagtaca	10	7	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	100707305	100707305	C	G	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.958	p.Q320E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	32	0	0	42	38	47.5	-	-	-	G	100707305	C	G	100707305	3	3	679	1	0	0	0	0	1	0	0	0	14036	827	29	2	980	2	SCYL2	12	100707305	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	15296052	100707305	33144590	603	59504										
GAS2L3	0	genome.wustl.edu	37	chr12	101018195	101018195	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgggtctaggaacacagtctCaaccatccgatggagcccca	10	14	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	101018195	101018195	C	G	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	missense	c.1612	p.Q538E	0.980	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	43	0	0	38	25	39.68	-	-	-	G	101018195	C	G	101018195	3	3	679	1	0	0	0	0	1	0	0	0	6298	827	29	2	1642	2	GAS2L3	12	101018195	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	310890	101018195	32833700	604	59505										
C12orf45	0	genome.wustl.edu	37	chr12	105380159	105380159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccatggcaagcccaaggctaGcccgagttgttcgtcgccca	11	15	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	105380159	105380159	G	A	SNP	C12orf45	ENST00000552951	human	ensembl	69_37n	1	known	missense	c.29	p.S10N	0.000	NULL	NULL	-	no_errors	C12orf45	HGNC	ENSG00000151131	10	0	0	10	7	41.18	-	-	-	A	105380159	G	A	105380159	3	1	679	1	0	0	0	0	1	0	0	0	1703	971	34	4	31	4	C12orf45	12	105380159	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4361964	105380159	28471736	605	59506										
HVCN1	0	genome.wustl.edu	37	chr12	111087993	111087993	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttctcagagcagctgaactCaaggtgttgaatcttggcgg	12	9	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	111087993	111087993	C	G	SNP	HVCN1	ENST00000242607	human	ensembl	69_37n	-1	known	missense	c.736	p.E246Q	0.988	NULL	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986	146	0	0	103	68	39.77	-	-	-	G	111087993	C	G	111087993	3	3	679	1	0	0	0	0	1	0	0	0	7516	835	29	2	93	2	HVCN1	12	111087993	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5707834	111087993	22763902	606	59507										
NAA25	0	genome.wustl.edu	37	chr12	112492275	112492275	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatgcacccagcatacagtaGattcgaacaagcagcaattt	7	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	112492275	112492275	G	C	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	missense	c.1545	p.I515M	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	39	0	0	42	13	23.64	-	-	-	C	112492275	G	C	112492275	3	2	679	1	0	0	0	0	1	0	0	0	10193	932	33	2	1417	2	NAA25	12	112492275	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1404282	112492275	21359620	607	59508										
OAS2	0	genome.wustl.edu	37	chr12	113425038	113425038	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgagatccagaagtcccttGatgggttcaccatccaggtg	11	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	113425038	113425038	G	C	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.373	p.D125H	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	43	0	0	43	13	23.21	-	-	-	C	113425038	G	C	113425038	3	2	679	1	0	0	0	0	1	0	0	0	10873	1290	45	2	379	2	OAS2	12	113425038	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	932763	113425038	20426857	608	59509										
MLXIP	0	genome.wustl.edu	37	chr12	122517133	122517133	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccacctgtccatcgacgcctCgctcaccaagctcttcgagt	7	18	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	122517133	122517133	C	G	SNP	MLXIP	ENST00000319080	human	ensembl	69_37n	1	known	missense	c.374	p.S125W	0.995	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLXIP	HGNC	ENSG00000175727	16	0	0	12	11	47.83	-	-	-	G	122517133	C	G	122517133	3	3	679	1	0	0	0	0	1	0	0	0	9707	893	31	3	376	3	MLXIP	12	122517133	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9092095	122517133	11334762	609	59510										
CCDC62	0	genome.wustl.edu	37	chr12	123285986	123285986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attacattgtgcaagatccaCacaaaatcaccaaaatgtca	4	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	123285986	123285986	C	T	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	silent	c.1293	p.H431	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	57	0	0	38	29	42.65	-	-	-	T	123285986	C	T	123285986	2	4	679	1	0	0	0	0	0	0	0	1	2860	477	17	4		4	CCDC62	12	123285986	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	768853	123285986	10565909	610	59511										
PIWIL1	0	genome.wustl.edu	37	chr12	130827556	130827556	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcagcaacctggttatattCagcctaggcctcagccgcca	9	14	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	12	130827556	130827556	C	T	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	nonsense	c.100	p.Q34*	0.008	pfam_GAGE	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	25	0	0	31	16	34.04	-	-	-	T	130827556	C	T	130827556	4	4	679	1	0	0	0	0	0	1	0	0	12031	827	29	2	106	2	PIWIL1	12	130827556	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7541570	130827556	3024339	611	59512										
SGCG	0	genome.wustl.edu	37	chr13	23869574	23869574	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcctgaaggggctctttttGaacattcagtggagacaccc	12	10	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	23869574	23869574	G	C	SNP	SGCG	ENST00000218867	human	ensembl	69_37n	1	known	missense	c.526	p.E176Q	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683	100	0	0	22	55	71.43	-	-	-	C	23869574	G	C	23869574	3	2	679	1	0	0	0	0	1	0	0	0	14291	1291	45	2	544	2	SGCG	13	23869574	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		23869574	91300304	612	59513										
SACS	0	genome.wustl.edu	37	chr13	23907808	23907808	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgactttagaatttttatatCatcttgggacatcaaatgat	6	5	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	23907808	23907808	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.10207	p.D3403N	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	19	0	0	13	21	61.76	-	-	-	T	23907808	C	T	23907808	3	4	679	1	0	0	0	0	1	0	0	0	13890	826	29	2	3536	2	SACS	13	23907808	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	38234	23907808	91262070	613	59514										
RB1	0	genome.wustl.edu	37	chr13	49037902	49037902	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgtatggcatatgcaaagtGaagaatatagaccttaaatt	8	4	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	49037902	49037902	G	C	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	silent	c.2142	p.V714	1.000	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	53	0	0	23	18	43.9	-	-	-	C	49037902	G	C	49037902	2	2	679	1	0	0	0	0	0	0	0	1	13181	1277	45	2		2	RB1	13	49037902	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	25130094	49037902	66131976	614	59515										
TBC1D4	0	genome.wustl.edu	37	chr13	76055566	76055566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgaagatgaataccgccgggTtgggctgcgtggccgacgga	17	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	76055566	76055566	T	C	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.338	p.N113S	0.091	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	26	0	0	11	13	54.17	-	-	-	C	76055566	T	C	76055566	3	2	679	1	0	0	0	0	1	0	0	0	15717	1725	60	5	3642	5	TBC1D4	13	76055566	Missense_Mutation	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	27017664	76055566	39114312	615	59516										
MYCBP2	0	genome.wustl.edu	37	chr13	77779677	77779677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tactgcttgagtctcttcctCtgtacttgcaacacccattt	5	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	77779677	77779677	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.3646	p.E1216Q	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	145	0	0	38	46	54.76	-	-	-	G	77779677	C	G	77779677	3	3	679	1	0	0	0	0	1	0	0	0	10090	922	32	2	10626	2	MYCBP2	13	77779677	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1724111	77779677	37390201	616	59517										
SPRY2	0	genome.wustl.edu	37	chr13	80911485	80911485	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacttgtcctcgtactgctcCgcgaccctgagctgaccgtg	10	15	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	80911485	80911485	C	T	SNP	SPRY2	ENST00000377102	human	ensembl	69_37n	-1	known	missense	c.356	p.R119Q	0.988	NULL	pfam_Sprouty	-	no_errors	SPRY2	HGNC	ENSG00000136158	53	0	0	12	22	64.71	-	-	-	T	80911485	C	T	80911485	3	4	679	1	0	0	0	0	1	0	0	0	15197	652	23	1	595	1	SPRY2	13	80911485	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3131808	80911485	34258393	617	59518										
MYO16	0	genome.wustl.edu	37	chr13	109496803	109496803	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtctcaggacagcatccctGaaaaccccatgatgagcggt	10	12	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	109496803	109496803	G	C	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.1144	p.E382Q	0.428	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	69	0	0	21	17	44.74	-	-	-	C	109496803	G	C	109496803	3	2	679	1	0	0	0	0	1	0	0	0	10136	1291	45	2	1178	2	MYO16	13	109496803	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	28585318	109496803	5673075	618	59519										
CARS2	0	genome.wustl.edu	37	chr13	111298422	111298422	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggccgccttcacggccctCttggtgctggagagcctgag	14	13	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	111298422	111298422	C	G	SNP	CARS2	ENST00000257347	human	ensembl	69_37n	-1	known	missense	c.1209	p.K403N	0.020	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS2	HGNC	ENSG00000134905	41	0	0	4	12	75	-	-	-	G	111298422	C	G	111298422	3	3	679	1	0	0	0	0	1	0	0	0	2683	912	32	2	501	2	CARS2	13	111298422	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1801619	111298422	3871456	619	59520										
ING1	0	genome.wustl.edu	37	chr13	111372216	111372216	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtcccaagtgccggggggaGaacgagaagaccatggacaa	15	9	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	111372216	111372216	G	A	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	silent	c.1206	p.E402	0.956	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	25	0	0	4	12	75	-	-	-	A	111372216	G	A	111372216	2	1	679	1	0	0	0	0	0	0	0	1	7789	933	33	2		2	ING1	13	111372216	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	73794	111372216	3797662	620	59521										
PCID2	0	genome.wustl.edu	37	chr13	113851427	113851427	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcccagtgtttccgggtctCaagtcccaagtaatccactg	10	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	13	113851427	113851427	C	G	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	missense	c.331	p.E111Q	0.000	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	43	0	0	14	37	72.55	-	-	-	G	113851427	C	G	113851427	3	3	679	1	0	0	0	0	1	0	0	0	11652	841	29	2		2	PCID2	13	113851427	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2479211	113851427	1318451	621	59522										
RPGRIP1	0	genome.wustl.edu	37	chr14	21792899	21792899	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcagggtgagaatctttttGaactgcacatccaccaggcc	9	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	21792899	21792899	G	C	SNP	RPGRIP1	ENST00000206660	human	ensembl	69_37n	1	known	missense	c.1885	p.E629Q	1.000	pfam_DUF3250	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	113	0	0	83	41	33.06	-	-	-	C	21792899	G	C	21792899	3	2	679	1	0	0	0	0	1	0	0	0	13635	1291	45	2	1939	2	RPGRIP1	14	21792899	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		21792899	85556641	622	59523										
OR4E2	0	genome.wustl.edu	37	chr14	22134074	22134074	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catgtatcttcatctatactCggccagacaccagcttctcc	5	15	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	22134074	22134074	C	G	SNP	OR4E2	ENST00000408935	human	ensembl	69_37n	1	known	missense	c.778	p.R260G	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977	78	0	0	52	29	35.8	-	-	-	G	22134074	C	G	22134074	3	3	679	1	0	0	0	0	1	0	0	0	11133	875	31	3	780	3	OR4E2	14	22134074	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	341175	22134074	85215466	623	59524										
IRF9	0	genome.wustl.edu	37	chr14	24631447	24631447	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcccggagtgtgctgggatGatacagctaagaccatgttc	12	9	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	24631447	24631447	G	C	SNP	IRF9	ENST00000396864	human	ensembl	69_37n	1	known	missense	c.94	p.D32H	0.967	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	53	0	0	20	16	44.44	-	-	-	C	24631447	G	C	24631447	3	2	679	1	0	0	0	0	1	0	0	0	7891	1290	45	2	96	2	IRF9	14	24631447	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2497373	24631447	82718093	624	59525										
AKAP6	0	genome.wustl.edu	37	chr14	33293653	33293653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgatgatgcagatacagtgGctctttcaagtccttcctct	8	11	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	33293653	33293653	G	T	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.6634	p.A2212S	0.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	88	0	0	57	36	38.71	-	-	-	T	33293653	G	T	33293653	3	4	679	1	0	0	0	0	1	0	0	0	455	1203	42	4	6680	4	AKAP6	14	33293653	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8662206	33293653	74055887	625	59526										
BAZ1A	0	genome.wustl.edu	37	chr14	35262107	35262107	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccttcactgtcatttcctaCaagagcttcctctaatactt	4	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	35262107	35262107	C	G	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.1384	p.V462L	1.000	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	65	0	0	61	43	41.35	-	-	-	G	35262107	C	G	35262107	3	3	679	1	0	0	0	0	1	0	0	0	1333	478	17	4	3350	4	BAZ1A	14	35262107	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1968454	35262107	72087433	626	59527										
BAZ1A	0	genome.wustl.edu	37	chr14	35264070	35264070	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcaggaggtagtctagttttCactggtgttggttctggaag	14	5	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	35264070	35264070	C	T	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	silent	c.1248	p.V416	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	29	0	0	28	18	39.13	-	-	-	T	35264070	C	T	35264070	2	4	679	1	0	0	0	0	0	0	0	1	1333	813	29	2		2	BAZ1A	14	35264070	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1963	35264070	72085470	627	59528										
RALGAPA1	0	genome.wustl.edu	37	chr14	36155786	36155786	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagtcgttctgctataaactCatccatcagatcaggaacat	6	10	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	36155786	36155786	C	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.2662	p.E888K	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	42	0	0	39	19	32.76	-	-	-	T	36155786	C	T	36155786	3	4	679	1	0	0	0	0	1	0	0	0	13096	835	29	2	3834	2	RALGAPA1	14	36155786	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	891716	36155786	71193754	628	59529										
NIN	0	genome.wustl.edu	37	chr14	51204902	51204902	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttctgaaactgatcacactCtctctttaagctcaattttt	3	10	5	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	51204902	51204902	C	G	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.5731	p.E1911Q	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	179	0	0	140	93	39.91	-	-	-	G	51204902	C	G	51204902	3	3	679	1	0	0	0	0	1	0	0	0	10489	922	32	2	838	2	NIN	14	51204902	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	15049116	51204902	56144638	629	59530										
PTGER2	0	genome.wustl.edu	37	chr14	52793938	52793938	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcccctttgcttcttacaGatttttgcatatatgaatga	5	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	52793938	52793938	G	A	SNP	PTGER2	ENST00000245457	human	ensembl	69_37n	1	known	splice_site	c.844-1	e2-1	1.000	-	-	-	no_errors	PTGER2	HGNC	ENSG00000125384	53	0	0	76	38	33.33	-	-	-	A	52793938	G	A	52793938	5	1	679	1	0	0	0	0	0	0	1	0	12824	956	33	2	849	2	PTGER2	14	52793938	Splice_Site	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1589036	52793938	54555602	630	59531										
SAMD4A	0	genome.wustl.edu	37	chr14	55203846	55203846	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gacatggatggatgtctcatGaggacttacgagctagagga	14	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	55203846	55203846	G	A	SNP	SAMD4A	ENST00000392067	human	ensembl	69_37n	1	known	missense	c.820	p.E274K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577	70	0	0	51	24	32	-	-	-	A	55203846	G	A	55203846	3	1	679	1	0	0	0	0	1	0	0	0	13907	1291	45	2	827	2	SAMD4A	14	55203846	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2409908	55203846	52145694	631	59532										
DLGAP5	0	genome.wustl.edu	37	chr14	55643837	55643837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcaaaaaagcattggcacttCtgggagtcataggtgttact	10	7	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	55643837	55643837	C	T	SNP	DLGAP5	ENST00000247191	human	ensembl	69_37n	-1	known	missense	c.992	p.R331K	0.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP5	HGNC	ENSG00000126787	106	0	0	73	53	42.06	-	-	-	T	55643837	C	T	55643837	3	4	679	1	0	0	0	0	1	0	0	0	4599	913	32	2	1691	2	DLGAP5	14	55643837	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	439991	55643837	51705703	632	59533										
PSMA3	0	genome.wustl.edu	37	chr14	58718910	58718910	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagtcctttctaaactttatGaagaaggttccaacaaaaga	6	7	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	58718910	58718910	G	A	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	1	known	missense	c.178	p.E60K	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567	84	0	0	69	35	33.65	-	-	-	A	58718910	G	A	58718910	3	1	679	1	0	0	0	0	1	0	0	0	12748	1291	45	2	188	2	PSMA3	14	58718910	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3075073	58718910	48630630	633	59534										
KIAA0586	0	genome.wustl.edu	37	chr14	58909503	58909503	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagagaaggatgctgttactCaggagactagaatttcaccc	10	8	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	58909503	58909503	C	G	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	missense	c.445	p.Q149E	0.260	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	54	0	0	45	22	32.84	-	-	-	G	58909503	C	G	58909503	3	3	679	1	0	0	0	0	1	0	0	0	8238	827	29	2	508	2	KIAA0586	14	58909503	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	190593	58909503	48440037	634	59535										
DAAM1	0	genome.wustl.edu	37	chr14	59830428	59830428	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gataagtttgtgtctgttgtCagccagttcatcacagtagc	10	8	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	59830428	59830428	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	silent	c.2784	p.V928	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	151	0	0	58	36	38.3	-	-	-	T	59830428	C	T	59830428	2	4	679	1	0	0	0	0	0	0	0	1	4247	813	29	2		2	DAAM1	14	59830428	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	920925	59830428	47519112	635	59536										
SLC38A6	0	genome.wustl.edu	37	chr14	61482670	61482670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttgcatttggattacctgGaaaggtaattttttttcctc	7	7	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	61482670	61482670	G	A	SNP	SLC38A6	ENST00000354886	human	ensembl	69_37n	1	known	missense	c.359	p.G120E	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A6	HGNC	ENSG00000139974	94	0	0	134	68	33.66	-	-	-	A	61482670	G	A	61482670	3	1	679	1	0	0	0	0	1	0	0	0	14697	1174	41	2	373	2	SLC38A6	14	61482670	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1652242	61482670	45866870	636	59537										
SYT16	0	genome.wustl.edu	37	chr14	62463084	62463084	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagccaacatgcaaaggactCatgttccacaatgtcccagt	7	12	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	62463084	62463084	C	G	SNP	SYT16	ENST00000446982	human	ensembl	69_37n	1	known	nonsense	c.347	p.S116*	0.005	NULL	NULL	-	no_errors	SYT16	HGNC	ENSG00000139973	63	0	0	23	16	41.03	-	-	-	G	62463084	C	G	62463084	4	3	679	1	0	0	0	0	0	1	0	0	15564	838	29	2	349	2	SYT16	14	62463084	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	980414	62463084	44886456	637	59538										
SYNE2	0	genome.wustl.edu	37	chr14	64653259	64653259	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggttttgaaggagcaaataGagcatttgcacagacaatgg	12	5	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	64653259	64653259	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.17674	p.E5892Q	0.909	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	45	0	0	54	33	37.93	-	-	-	C	64653259	G	C	64653259	3	2	679	1	0	0	0	0	1	0	0	0	15538	943	33	2	18056	2	SYNE2	14	64653259	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2190175	64653259	42696281	638	59539										
ZFYVE26	0	genome.wustl.edu	37	chr14	68219189	68219189	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcactgtacttctctttctCcaccaactggcgggcagctc	7	16	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	68219189	68219189	C	G	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	missense	c.7243	p.E2415Q	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	90	0	0	27	14	33.33	-	-	-	G	68219189	C	G	68219189	3	3	679	1	0	0	0	0	1	0	0	0	17764	864	30	2	388	2	ZFYVE26	14	68219189	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3565930	68219189	39130351	639	59540										
ADAM21	0	genome.wustl.edu	37	chr14	70925639	70925639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcaatgaatgtgaccttccaGaatggtgcaatggaacatct	9	8	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	70925639	70925639	G	C	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	missense	c.1423	p.E475Q	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	66	0	0	35	16	31.37	-	-	-	C	70925639	G	C	70925639	3	2	679	1	0	0	0	0	1	0	0	0	243	943	33	2	1425	2	ADAM21	14	70925639	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2706450	70925639	36423901	640	59541										
ZFYVE1	0	genome.wustl.edu	37	chr14	73490905	73490905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cccccagaatgagtcctcttCtggcactccaggcacaagtt	8	15	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	73490905	73490905	C	G	SNP	ZFYVE1	ENST00000553891	human	ensembl	69_37n	-1	known	missense	c.312	p.Q104H	1.000	superfamily_Growth_fac_rcpt	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Growth_fac_rcpt,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861	60	0	0	67	38	36.19	-	-	-	G	73490905	C	G	73490905	3	3	679	1	0	0	0	0	1	0	0	0	17759	912	32	2	2065	2	ZFYVE1	14	73490905	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2565266	73490905	33858635	641	59542										
C14orf169	0	genome.wustl.edu	37	chr14	73958722	73958722	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttacctcacgccccctaactCgcagggctttgccccccact	6	20	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	73958722	73958722	C	G	SNP	C14orf169	ENST00000531973	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242	25	0	0	13	9	40.91	-	-	-	G	73958722	C	G	73958722	1	3	679	0	1	0	0	0	0	0	0	0	1770	884	31	3		3	C14orf169	14	73958722	RNA	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	467817	73958722	33390818	642	59543										
FLRT2	0	genome.wustl.edu	37	chr14	86088200	86088200	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cccaagaatgtcagagttctCcatttgcaggaaaacaatat	7	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	86088200	86088200	C	G	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	silent	c.342	p.L114	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	65	0	0	30	16	34.78	-	-	-	G	86088200	C	G	86088200	2	3	679	1	0	0	0	0	0	0	0	1	5985	842	30	2		2	FLRT2	14	86088200	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12129478	86088200	21261340	643	59544										
C14orf102	0	genome.wustl.edu	37	chr14	90759091	90759091	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtttgcttcttggtcttatCagggcgccagggccgccagt	14	11	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	90759091	90759091	C	G	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.1792	p.D598H	1.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	29	0	0	50	33	39.76	-	-	-	G	90759091	C	G	90759091	3	3	679	1	0	0	0	0	1	0	0	0	1747	826	29	2	1726	2	C14orf102	14	90759091	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4670891	90759091	16590449	644	59545										
TRIP11	0	genome.wustl.edu	37	chr14	92482143	92482143	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatttctgttggtgtgcattCtgcagtactgacatttcatg	9	7	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	92482143	92482143	C	G	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.720	p.Q240H	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	92	0	0	130	78	37.32	-	-	-	G	92482143	C	G	92482143	3	3	679	1	0	0	0	0	1	0	0	0	16651	912	32	2	5283	2	TRIP11	14	92482143	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1723052	92482143	14867397	645	59546										
DDX24	0	genome.wustl.edu	37	chr14	94545820	94545820	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctttggtgagctagactttCcctcctcctcctcctcttct	5	16	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	94545820	94545820	C	G	SNP	DDX24	ENST00000330836	human	ensembl	69_37n	-1	known	missense	c.269	p.G90A	0.007	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737	123	0	0	196	148	42.65	-	-	-	G	94545820	C	G	94545820	3	3	679	1	0	0	0	0	1	0	0	0	4382	855	30	2	2342	2	DDX24	14	94545820	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2063677	94545820	12803720	646	59547										
AK7	0	genome.wustl.edu	37	chr14	96924456	96924456	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctaacgatgtaggggaaggaGaagaagaagtcgaagaggaa	16	3	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	96924456	96924456	G	C	SNP	AK7	ENST00000267584	human	ensembl	69_37n	1	known	missense	c.1264	p.E422Q	0.948	NULL	pfam_Dpy-30_motif,pfam_Adenylate_kin	-	no_errors	AK7	HGNC	ENSG00000140057	56	0	0	24	12	33.33	-	-	-	C	96924456	G	C	96924456	3	2	679	1	0	0	0	0	1	0	0	0	444	943	33	2	1310	2	AK7	14	96924456	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2378636	96924456	10425084	647	59548										
EML1	0	genome.wustl.edu	37	chr14	100405619	100405619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcctgtcaacaggcgacgaCtttggcaaagtgcacctctt	9	13	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	100405619	100405619	C	G	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	missense	c.2334	p.D778E	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	30	0	0	31	21	40.38	-	-	-	G	100405619	C	G	100405619	3	3	679	1	0	0	0	0	1	0	0	0	5133	564	20	4	2420	4	EML1	14	100405619	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3481163	100405619	6943921	648	59549										
EML1	0	genome.wustl.edu	37	chr14	100406371	100406371	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcagccatgtcaccaatgtCgatttcctctgtgaagacag	9	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	100406371	100406371	C	T	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	silent	c.2427	p.V809	0.019	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	23	0	0	31	19	38	-	-	-	T	100406371	C	T	100406371	2	4	679	1	0	0	0	0	0	0	0	1	5133	871	31	1		1	EML1	14	100406371	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	752	100406371	6943169	649	59550										
AHNAK2	0	genome.wustl.edu	37	chr14	105419013	105419013	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgaggtccactttgggcatCttgaaactgggcatctccac	10	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	14	105419013	105419013	C	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.2775	p.K925N	0.044	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	47	0	0	86	64	42.67	-	-	-	G	105419013	C	G	105419013	3	3	679	1	0	0	0	0	1	0	0	0	415	912	32	2	14616	2	AHNAK2	14	105419013	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5012642	105419013	1930527	650	59551										
ATP10A	0	genome.wustl.edu	37	chr15	25966966	25966966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagctgcgagtctgtttcttCgtcatacaactgcatgtcct	8	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	25966966	25966966	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1201	p.E401K	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	63	0	0	37	30	44.12	-	-	-	T	25966966	C	T	25966966	3	4	679	1	0	0	0	0	1	0	0	0	1120	893	31	1	3358	1	ATP10A	15	25966966	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		25966966	76564426	651	59552										
GABRA5	0	genome.wustl.edu	37	chr15	27185190	27185190	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcacaggtgtccttttggctGaaccgggaatcagtcccagc	11	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	27185190	27185190	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	silent	c.843	p.L281	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	92	0	0	43	35	44.87	-	-	-	A	27185190	G	A	27185190	2	1	679	1	0	0	0	0	0	0	0	1	6213	1277	45	2		2	GABRA5	15	27185190	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1218224	27185190	75346202	652	59553										
FAM189A1	0	genome.wustl.edu	37	chr15	29674025	29674025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agacgacacctatgagtcccGacagcagcacctggaaggac	11	13	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	29674025	29674025	G	A	SNP	FAM189A1	ENST00000261275	human	ensembl	69_37n	-1	known	missense	c.230	p.S77L	0.986	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189A1	HGNC	ENSG00000104059	81	0	0	21	10	32.26	-	-	-	A	29674025	G	A	29674025	3	1	679	1	0	0	0	0	1	0	0	0	5557	1059	37	1	1429	1	FAM189A1	15	29674025	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2488835	29674025	72857367	653	59554										
RYR3	0	genome.wustl.edu	37	chr15	33831625	33831625	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaaagttcgaattggcgatGacctcatcctcgtcagcgtg	11	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	33831625	33831625	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.508	p.D170N	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR,smart_MIR_motif,prints_Ryan_recept,pfscan_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	64	0	0	54	20	27.03	-	-	-	A	33831625	G	A	33831625	3	1	679	1	0	0	0	0	1	0	0	0	13856	1290	45	2	530	2	RYR3	15	33831625	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4157600	33831625	68699767	654	59555										
AVEN	0	genome.wustl.edu	37	chr15	34295365	34295365	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttagaataatttccctgttCatcattctcttctccatagg	4	10	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	34295365	34295365	C	T	SNP	AVEN	ENST00000306730	human	ensembl	69_37n	-1	known	missense	c.313	p.E105K	0.928	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857	63	0	0	81	50	38.17	-	-	-	T	34295365	C	T	34295365	3	4	679	1	0	0	0	0	1	0	0	0	1230	835	29	2	795	2	AVEN	15	34295365	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	463740	34295365	68236027	655	59556										
PGBD4	0	genome.wustl.edu	37	chr15	34396199	34396199	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ataaacttcagactggcattGattgaaagaatgctggaaaa	9	5	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	34396199	34396199	G	C	SNP	PGBD4	ENST00000397766	human	ensembl	69_37n	1	known	missense	c.1467	p.L489F	0.053	NULL	NULL	-	no_errors	PGBD4	HGNC	ENSG00000182405	41	0	0	23	23	50	-	-	-	C	34396199	G	C	34396199	3	2	679	1	0	0	0	0	1	0	0	0	11857	1281	45	2	1469	2	PGBD4	15	34396199	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	100834	34396199	68135193	656	59557										
MEIS2	0	genome.wustl.edu	37	chr15	37390168	37390168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtccggggggtcagtttacCcatagatcgcgtccttgtcc	13	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	37390168	37390168	C	T	SNP	MEIS2	ENST00000561208	human	ensembl	69_37n	-1	known	missense	c.245	p.G82E	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	25	0	0	15	8	34.78	-	-	-	T	37390168	C	T	37390168	3	4	679	1	0	0	0	0	1	0	0	0	9539	637	22	4	1295	4	MEIS2	15	37390168	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2993969	37390168	65141224	657	59558										
BUB1B	0	genome.wustl.edu	37	chr15	40494852	40494852	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccttgcagttctcaaaacctCagaaagcatcacctcaaatg	5	13	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	40494852	40494852	C	G	SNP	BUB1B	ENST00000412359	human	ensembl	69_37n	1	known	nonsense	c.1733	p.S578*	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970	58	0	0	58	32	35.56	-	-	-	G	40494852	C	G	40494852	4	3	679	1	0	0	0	0	0	1	0	0	1580	838	29	2	1745	2	BUB1B	15	40494852	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3104684	40494852	62036540	658	59559										
FAM82A2	0	genome.wustl.edu	37	chr15	41037426	41037426	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttctttgtcagagtcccgctCattgtcagactccgcattgg	9	12	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	41037426	41037426	C	T	SNP	FAM82A2	ENST00000260385	human	ensembl	69_37n	-1	known	missense	c.556	p.E186K	1.000	NULL	NULL	-	no_errors	FAM82A2	HGNC	ENSG00000137824	122	0	0	78	52	40	-	-	-	T	41037426	C	T	41037426	3	4	679	1	0	0	0	0	1	0	0	0	5676	835	29	2	892	2	FAM82A2	15	41037426	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	542574	41037426	61493966	659	59560										
TYRO3	0	genome.wustl.edu	37	chr15	41860467	41860467	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atccgcacagattcaggcctCatcttggagtgggaagaagt	12	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	41860467	41860467	C	T	SNP	TYRO3	ENST00000559815	human	ensembl	69_37n	1	known	missense	c.212	p.S71L	1.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TYRO3	HGNC	ENSG00000092445	50	0	0	35	17	32.69	-	-	-	T	41860467	C	T	41860467	3	4	679	1	0	0	0	0	1	0	0	0	16911	813	29	2	1044	2	TYRO3	15	41860467	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	823041	41860467	60670925	660	59561										
PLA2G4D	0	genome.wustl.edu	37	chr15	42371908	42371908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcgtatctgataggtccctCcaggtccctctgcgaccact	10	15	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	42371908	42371908	C	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.1144	p.E382K	0.003	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	30	0	0	17	12	41.38	-	-	-	T	42371908	C	T	42371908	3	4	679	1	0	0	0	0	1	0	0	0	12078	864	30	2	1344	2	PLA2G4D	15	42371908	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	511441	42371908	60159484	661	59562										
VPS39	0	genome.wustl.edu	37	chr15	42476775	42476775	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtgtgcagatcccttcctCattgagtaccacggtgagat	10	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	42476775	42476775	C	G	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	missense	c.691	p.E231Q	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	101	0	0	57	22	27.85	-	-	-	G	42476775	C	G	42476775	3	3	679	1	0	0	0	0	1	0	0	0	17306	835	29	2	2041	2	VPS39	15	42476775	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	104867	42476775	60054617	662	59563										
ZFP106	0	genome.wustl.edu	37	chr15	42743889	42743889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggttgtgaaaccaagtcgagGagcctcctgcaacaccctta	10	12	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	42743889	42743889	G	A	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.512	p.S171F	0.994	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	69	0	0	29	20	40.82	-	-	-	A	42743889	G	A	42743889	3	1	679	1	0	0	0	0	1	0	0	0	17733	1174	41	2	5211	2	ZFP106	15	42743889	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	267114	42743889	59787503	663	59564										
TMEM62	0	genome.wustl.edu	37	chr15	43476616	43476616	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtacatctggcaggtttaTtcctgctactttctttatgc	7	10	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	43476616	43476616	T	C	SNP	TMEM62	ENST00000564494	human	ensembl	69_37n	1	novel	missense	c.1454	p.I485T	0.689	NULL	superfamily_Cadherin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM62	HGNC	ENSG00000137842	60	0	0	71	65	47.79	-	-	-	C	43476616	T	C	43476616	3	2	679	1	0	0	0	0	1	0	0	0	16284	1500	52	5	1818	5	TMEM62	15	43476616	Missense_Mutation	SNP	T	TCGA-D8-A1JA-01A-11D-A13L-09	732727	43476616	59054776	664	59565										
TUBGCP4	0	genome.wustl.edu	37	chr15	43678117	43678117	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttgttggagaatctgtccaGatgtttgagaatcaaaatgt	10	4	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	43678117	43678117	G	C	SNP	TUBGCP4	ENST00000260383	human	ensembl	69_37n	1	known	missense	c.852	p.Q284H	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP4	HGNC	ENSG00000137822	116	0	0	44	26	37.14	-	-	-	C	43678117	G	C	43678117	3	2	679	1	0	0	0	0	1	0	0	0	16865	933	33	2	882	2	TUBGCP4	15	43678117	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	201501	43678117	58853275	665	59566										
MFAP1	0	genome.wustl.edu	37	chr15	44105533	44105533	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caatgcttcggcttcacgttCttgaactgtcactcggtcct	8	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	44105533	44105533	C	G	SNP	MFAP1	ENST00000267812	human	ensembl	69_37n	-1	known	missense	c.640	p.E214Q	1.000	pfam_MFAP1_C	pfam_MFAP1_C	-	no_errors	MFAP1	HGNC	ENSG00000140259	134	0	0	114	97	45.97	-	-	-	G	44105533	C	G	44105533	3	3	679	1	0	0	0	0	1	0	0	0	9584	922	32	2	699	2	MFAP1	15	44105533	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	427416	44105533	58425859	666	59567										
SPG11	0	genome.wustl.edu	37	chr15	44881460	44881460	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attgtcttaccatcagagaaGagatgctctctttcaacaaa	6	9	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	44881460	44881460	G	C	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	silent	c.4896	p.L1632	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	25	0	0	16	18	52.94	-	-	-	C	44881460	G	C	44881460	2	2	679	1	0	0	0	0	0	0	0	1	15132	929	33	2		2	SPG11	15	44881460	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	775927	44881460	57649932	667	59568										
FBN1	0	genome.wustl.edu	37	chr15	48818444	48818444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccaggaatggtgctgcattCatcaatatctggaatataaa	8	7	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	48818444	48818444	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.871	p.E291K	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	87	0	0	34	20	37.04	-	-	-	T	48818444	C	T	48818444	3	4	679	1	0	0	0	0	1	0	0	0	5748	835	29	2	7976	2	FBN1	15	48818444	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3936984	48818444	53712948	668	59569										
SECISBP2L	0	genome.wustl.edu	37	chr15	49320846	49320846	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcattgttgcagtggtctctGagagagacttgttagcgata	13	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	49320846	49320846	G	C	SNP	SECISBP2L	ENST00000559471	human	ensembl	69_37n	-1	known	nonsense	c.698	p.S233*	0.736	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593	73	0	0	50	20	28.57	-	-	-	C	49320846	G	C	49320846	4	2	679	1	0	0	0	0	0	1	0	0	14095	1294	45	2	2524	2	SECISBP2L	15	49320846	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	502402	49320846	53210546	669	59570										
DMXL2	0	genome.wustl.edu	37	chr15	51773348	51773348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgtcttcctcttcatctaaGgcactgtcgtgatcttcacc	6	14	6	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	51773348	51773348	G	A	SNP	DMXL2	ENST00000560891	human	ensembl	69_37n	-1	novel	missense	c.329	p.P110L	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMXL2	HGNC	ENSG00000104093	121	0	0	101	57	36.08	-	-	-	A	51773348	G	A	51773348	3	1	679	1	0	0	0	0	1	0	0	0	4631	987	35	4	3238	4	DMXL2	15	51773348	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2452502	51773348	50758044	670	59571										
DMXL2	0	genome.wustl.edu	37	chr15	51828902	51828902	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggatctagagtgtggctgtGatccgtgaggactgcctaca	15	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	51828902	51828902	G	C	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	nonsense	c.1775	p.S592*	0.005	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	108	0	0	37	26	41.27	-	-	-	C	51828902	G	C	51828902	4	2	679	1	0	0	0	0	0	1	0	0	4631	1294	45	2	7466	2	DMXL2	15	51828902	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	55554	51828902	50702490	671	59572										
TMOD3	0	genome.wustl.edu	37	chr15	52155168	52155168	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatctgtcagaaacagaactGaaacaactggaaactgtttt	7	7	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	52155168	52155168	G	A	SNP	TMOD3	ENST00000308580	human	ensembl	69_37n	1	known	silent	c.87	p.L29	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	46	0	0	55	24	30.38	-	-	-	A	52155168	G	A	52155168	2	1	679	1	0	0	0	0	0	0	0	1	16330	1277	45	2		2	TMOD3	15	52155168	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	326266	52155168	50376224	672	59573										
MYO5C	0	genome.wustl.edu	37	chr15	52574997	52574997	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	accgttccatcctccagcagGagtcgcaggaccttgtcacc	9	16	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	52574997	52574997	G	C	SNP	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	silent	c.120	p.L40	0.014	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	50	0	0	52	31	37.35	-	-	-	C	52574997	G	C	52574997	2	2	679	1	0	0	0	0	0	0	0	1	10152	1161	41	2		2	MYO5C	15	52574997	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	419829	52574997	49956395	673	59574										
MYO5A	0	genome.wustl.edu	37	chr15	52646094	52646094	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttgctgcggagcacctgctCctccttgcggtccagctcat	10	16	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	52646094	52646094	C	A	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	nonsense	c.3541	p.E1181*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	68	0	0	32	18	36	-	-	-	A	52646094	C	A	52646094	4	1	679	1	0	0	0	0	0	1	0	0	10150	864	30	2	2090	2	MYO5A	15	52646094	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	71097	52646094	49885298	674	59575										
UNC13C	0	genome.wustl.edu	37	chr15	54586148	54586148	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagtatgggatgaagatgatGatattaaatccagagtcaag	12	3	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	54586148	54586148	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.3874	p.D1292N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	80	0	0	118	67	36.22	-	-	-	A	54586148	G	A	54586148	3	1	679	1	0	0	0	0	1	0	0	0	17083	1290	45	2	3908	2	UNC13C	15	54586148	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1940054	54586148	47945244	675	59576										
HERC1	0	genome.wustl.edu	37	chr15	63966589	63966589	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttccaaaagcccatgaaccaCtaatttatagatcatggctt	5	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	63966589	63966589	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.7798	p.V2600L	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	45	0	0	26	36	58.06	-	-	-	G	63966589	C	G	63966589	3	3	679	1	0	0	0	0	1	0	0	0	7108	565	20	4	6951	4	HERC1	15	63966589	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	9380441	63966589	38564803	676	59577										
HERC1	0	genome.wustl.edu	37	chr15	64040012	64040012	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgcaggtgtgagaaggtactCtcttcaagatctacacaata	9	9	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	64040012	64040012	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.2265	p.E755D	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	36	0	0	32	41	56.16	-	-	-	G	64040012	C	G	64040012	3	3	679	1	0	0	0	0	1	0	0	0	7108	912	32	2	12592	2	HERC1	15	64040012	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	73423	64040012	38491380	677	59578										
DENND4A	0	genome.wustl.edu	37	chr15	65994124	65994124	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttataataaccataagtaatGgcattggggtcaataccagc	8	7	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	65994124	65994124	G	C	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	silent	c.2535	p.A845	1.000	tigrfam_Pentatricopeptide_repeat	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485	40	0	0	94	28	22.95	-	-	-	C	65994124	G	C	65994124	2	2	679	1	0	0	0	0	0	0	0	1	4469	1335	47	4		4	DENND4A	15	65994124	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1954112	65994124	36537268	678	59579										
MEGF11	0	genome.wustl.edu	37	chr15	66206157	66206157	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggtctcggcccttctctttCtgccgccgccgatgccaggc	11	17	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	66206157	66206157	C	G	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	missense	c.2628	p.Q876H	0.999	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	51	0	0	20	14	41.18	-	-	-	G	66206157	C	G	66206157	3	3	679	1	0	0	0	0	1	0	0	0	9532	912	32	2	522	2	MEGF11	15	66206157	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	212033	66206157	36325235	679	59580										
SPESP1	0	genome.wustl.edu	37	chr15	69238543	69238543	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acccagagagttggaataatGatgacattttgaaaaaaatt	8	4	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	69238543	69238543	G	C	SNP	SPESP1	ENST00000310673	human	ensembl	69_37n	1	known	missense	c.670	p.D224H	0.002	NULL	NULL	-	no_errors	SPESP1	HGNC	ENSG00000258484	17	0	0	16	4	20	-	-	-	C	69238543	G	C	69238543	3	2	679	1	0	0	0	0	1	0	0	0	15131	1290	45	2	676	2	SPESP1	15	69238543	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3032386	69238543	33292849	680	59581										
GLCE	0	genome.wustl.edu	37	chr15	69561130	69561130	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaaagaccatatattcctCaattcagctttaagggcaac	5	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	69561130	69561130	C	T	SNP	GLCE	ENST00000261858	human	ensembl	69_37n	1	known	silent	c.1401	p.L467	0.974	pfam_C5-epim	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	25	0	0	29	37	56.06	-	-	-	T	69561130	C	T	69561130	2	4	679	1	0	0	0	0	0	0	0	1	6484	813	29	2		2	GLCE	15	69561130	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	322587	69561130	32970262	681	59582										
TLE3	0	genome.wustl.edu	37	chr15	70366914	70366916	+	In_Frame_Del	DEL	GCG	GCG	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcatggtgacctgcttggcGcgctccactgcctgcgccac							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	70366914	70366916	GCG	-	DEL	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	in_frame_del	c.330_328	p.R110in_frame_del	0.561:0.998:0.994	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	91	0	0	69	14	16.67	-	-	-	-	70366916	GCG	-	70366914	7	5	679	1	0	1	0	1	0	0	0	0	16035	1074	38	0	2048	0	TLE3	15	70366914	In_Frame_Del	DEL	GCG	TCGA-D8-A1JA-01A-11D-A13L-09	805784	70366914	32164478	682	59583										
PML	0	genome.wustl.edu	37	chr15	74317242	74317242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcccagaggctgccagcactCccagggaccctattgacgtt	11	15	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	74317242	74317242	C	G	SNP	PML	ENST00000268058	human	ensembl	69_37n	1	known	missense	c.1228	p.P410A	0.459	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464	114	0	0	66	23	25.84	-	-	-	G	74317242	C	G	74317242	3	3	679	1	0	0	0	0	1	0	0	0	12209	855	30	2	1242	2	PML	15	74317242	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3950328	74317242	28214150	683	59584										
ISLR2	0	genome.wustl.edu	37	chr15	74425644	74425644	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caactctatcacaatcccttCcactgcggctgcggccttgt	7	16	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	74425644	74425644	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	69_37n	1	known	silent	c.549	p.F183	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	27	0	0	21	7	25	-	-	-	T	74425644	C	T	74425644	2	4	679	1	0	0	0	0	0	0	0	1	7913	854	30	2		2	ISLR2	15	74425644	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	108402	74425644	28105748	684	59585										
EDC3	0	genome.wustl.edu	37	chr15	74948281	74948281	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agccaggttcccttcaaaatCaaaatctgtgtctgggatct	8	10	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	74948281	74948281	C	G	SNP	EDC3	ENST00000315127	human	ensembl	69_37n	-1	known	missense	c.613	p.D205H	1.000	pfam_FDF_dom	pfam_YjeF_N,pfam_FDF_dom,superfamily_YjeF_N	-	no_errors	EDC3	HGNC	ENSG00000179151	113	0	0	103	142	57.72	-	-	-	G	74948281	C	G	74948281	3	3	679	1	0	0	0	0	1	0	0	0	4942	826	29	2	929	2	EDC3	15	74948281	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	522637	74948281	27583111	685	59586										
CYP1A2	0	genome.wustl.edu	37	chr15	75042574	75042574	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgctacctggaggagcatgtGagcaaggaggctaaggccct	15	9	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	75042574	75042574	G	C	SNP	CYP1A2	ENST00000343932	human	ensembl	69_37n	1	known	silent	c.495	p.V165	0.989	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505	134	0	0	40	21	34.43	-	-	-	C	75042574	G	C	75042574	2	2	679	1	0	0	0	0	0	0	0	1	4181	1277	45	2		2	CYP1A2	15	75042574	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	94293	75042574	27488818	686	59587										
COMMD4	0	genome.wustl.edu	37	chr15	75631366	75631366	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acagtggcagtgctgagtttCatcctctccagtgcggccaa	11	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	75631366	75631366	C	A	SNP	COMMD4	ENST00000267935	human	ensembl	69_37n	1	known	missense	c.222	p.F74L	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD4	HGNC	ENSG00000140365	73	0	0	19	11	36.67	-	-	-	A	75631366	C	A	75631366	3	1	679	1	0	0	0	0	1	0	0	0	3748	825	29	2	240	2	COMMD4	15	75631366	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	588792	75631366	26900026	687	59588										
SIN3A	0	genome.wustl.edu	37	chr15	75703925	75703925	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attaacatagttgatggcatGattaaactccacaggttgat	8	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	75703925	75703925	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.916	p.H306Y	1.000	superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	87	0	0	99	44	30.77	-	-	-	A	75703925	G	A	75703925	3	1	679	1	0	0	0	0	1	0	0	0	14414	1290	45	2	2969	2	SIN3A	15	75703925	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	72559	75703925	26827467	688	59589										
HMG20A	0	genome.wustl.edu	37	chr15	77769896	77769896	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttgttcctcttgattcacaGaaagaaacagaggtaaagga	9	6	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	77769896	77769896	G	C	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	1	known	splice_site	c.616-1	e6-1	1.000	-	-	-	no_errors	HMG20A	HGNC	ENSG00000140382	54	0	0	94	42	30.88	-	-	-	C	77769896	G	C	77769896	5	2	679	1	0	0	0	0	0	0	1	0	7272	956	33	2	637	2	HMG20A	15	77769896	Splice_Site	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2065971	77769896	24761496	689	59590										
ADAMTS7	0	genome.wustl.edu	37	chr15	79089018	79089018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcagctactaccagggtctCcacccacttctctttgctga	6	15	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	79089018	79089018	C	G	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	missense	c.733	p.E245Q	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	26	0	0	25	14	35.9	-	-	-	G	79089018	C	G	79089018	3	3	679	1	0	0	0	0	1	0	0	0	271	864	30	2	4411	2	ADAMTS7	15	79089018	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1319122	79089018	23442374	690	59591										
CPEB1	0	genome.wustl.edu	37	chr15	83218294	83218294	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caagatggctgccagggcctCagcatttagcattccatgca	10	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	83218294	83218294	C	G	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444Q	1.000	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	47	0	0	49	6	10.91	-	-	-	G	83218294	C	G	83218294	3	3	679	1	0	0	0	0	1	0	0	0	3830	835	29	2	386	2	CPEB1	15	83218294	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4129276	83218294	19313098	691	59592										
AKAP13	0	genome.wustl.edu	37	chr15	86262432	86262432	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaaagctgttcccctgtttgGatgagctgatcagtatccat	9	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	86262432	86262432	G	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.6139	p.D2047H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	92	0	0	89	41	31.54	-	-	-	C	86262432	G	C	86262432	3	2	679	1	0	0	0	0	1	0	0	0	449	1174	41	2	6283	2	AKAP13	15	86262432	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3044138	86262432	16268960	692	59593										
KLHL25	0	genome.wustl.edu	37	chr15	86312361	86312361	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggaggagctcgggcaagtgGaccttccgtggctccaggtc	16	12	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	86312361	86312361	G	C	SNP	KLHL25	ENST00000337975	human	ensembl	69_37n	-1	known	silent	c.681	p.V227	0.006	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655	17	0	0	8	5	38.46	-	-	-	C	86312361	G	C	86312361	2	2	679	1	0	0	0	0	0	0	0	1	8433	1161	41	2		2	KLHL25	15	86312361	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	49929	86312361	16219031	693	59594										
AGBL1	0	genome.wustl.edu	37	chr15	86807754	86807754	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caatagtctcaggagagattCttctgaaagtgaaatccctg	9	8	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	86807754	86807754	C	G	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.1214	p.S405C	0.041	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	35	0	0	30	18	37.5	-	-	-	G	86807754	C	G	86807754	3	3	679	1	0	0	0	0	1	0	0	0	375	913	32	2	1248	2	AGBL1	15	86807754	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	495393	86807754	15723638	694	59595										
WDR93	0	genome.wustl.edu	37	chr15	90245206	90245206	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtcttgggaaattattgaaGagagaaacgcactgagggaa	13	4	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	90245206	90245206	G	C	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	missense	c.229	p.E77Q	0.956	NULL	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	23	0	0	22	16	42.11	-	-	-	C	90245206	G	C	90245206	3	2	679	1	0	0	0	0	1	0	0	0	17437	943	33	2	231	2	WDR93	15	90245206	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3437452	90245206	12286186	695	59596										
IQGAP1	0	genome.wustl.edu	37	chr15	91009562	91009562	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtgatgttggcaaaacactGagtgcccttcgctcccctga	11	12	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	91009562	91009562	G	A	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	silent	c.1929	p.L643	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	71	0	0	63	29	31.52	-	-	-	A	91009562	G	A	91009562	2	1	679	1	0	0	0	0	0	0	0	1	7868	1277	45	2		2	IQGAP1	15	91009562	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	764356	91009562	11521830	696	59597										
IQGAP1	0	genome.wustl.edu	37	chr15	91016137	91016137	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggctggccaatgaaggcctGatcaccaggctgcaggctcg	14	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	91016137	91016137	G	C	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	silent	c.2244	p.L748	0.997	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	53	0	0	35	12	25.53	-	-	-	C	91016137	G	C	91016137	2	2	679	1	0	0	0	0	0	0	0	1	7868	1277	45	2		2	IQGAP1	15	91016137	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6575	91016137	11515255	697	59598										
IQGAP1	0	genome.wustl.edu	37	chr15	91019954	91019954	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggaacagttgtctgatatGatgatgataaataaacagaa	9	3	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	91019954	91019954	G	A	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	missense	c.2844	p.M948I	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	74	0	0	109	42	27.81	-	-	-	A	91019954	G	A	91019954	3	1	679	1	0	0	0	0	1	0	0	0	7868	1290	45	2	2938	2	IQGAP1	15	91019954	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3817	91019954	11511438	698	59599										
IQGAP1	0	genome.wustl.edu	37	chr15	91021107	91021107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttaatcagatggagtctcaGacaggagaggcaaggtatgt	14	5	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	91021107	91021107	G	C	SNP	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	missense	c.3315	p.Q1105H	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	59	0	0	77	28	26.67	-	-	-	C	91021107	G	C	91021107	3	2	679	1	0	0	0	0	1	0	0	0	7868	933	33	2	3417	2	IQGAP1	15	91021107	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1153	91021107	11510285	699	59600										
PRC1	0	genome.wustl.edu	37	chr15	91524794	91524794	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaaaaggcatcttcgtcttCacacaccacatctctttcaa	3	14	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	15	91524794	91524794	C	T	SNP	PRC1	ENST00000394249	human	ensembl	69_37n	-1	known	missense	c.607	p.E203K	1.000	pfam_Microtubule-assoc_MAP65_ASE1	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	PRC1	HGNC	ENSG00000198901	92	0	0	89	33	27.05	-	-	-	T	91524794	C	T	91524794	3	4	679	1	0	0	0	0	1	0	0	0	12527	835	29	2	1299	2	PRC1	15	91524794	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	503687	91524794	11006598	700	59601										
C16orf91	0	genome.wustl.edu	37	chr16	1476224	1476224	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaggactggtcagcctcatCctggtgtgcagcccaggggg	17	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	1476224	1476224	C	G	SNP	C16orf91	ENST00000310355	human	ensembl	69_37n	-1	known	missense	c.399	p.R133S	0.002	NULL	prints_CCSMST1	-	no_errors	C16orf91	HGNC	ENSG00000174109	28	0	0	34	19	35.85	-	-	-	G	1476224	C	G	1476224	3	3	679	1	0	0	0	0	1	0	0	0	1857	854	30	2	681	2	C16orf91	16	1476224	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		1476224	88878529	701	59602										
NOXO1	0	genome.wustl.edu	37	chr16	2030976	2030976	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgtcccaactcctgcgcacGaaggtgtcgctgccgtctga	11	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	2030976	2030976	G	A	SNP	NOXO1	ENST00000397280	human	ensembl	69_37n	-1	known	silent	c.111	p.F37	0.000	pfam_Phox,superfamily_Phox,pfscan_Phox	pfam_SH3_domain,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NOXO1	HGNC	ENSG00000196408	8	0	0	14	4	22.22	-	-	-	A	2030976	G	A	2030976	2	1	679	1	0	0	0	0	0	0	0	1	10633	1049	37	1		1	NOXO1	16	2030976	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	554752	2030976	88323777	702	59603										
OR2C1	0	genome.wustl.edu	37	chr16	3406243	3406243	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtggctgcataacccagctCtatgtcttcctttggctggg	12	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	3406243	3406243	C	G	SNP	OR2C1	ENST00000304936	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.875	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158	76	0	0	51	33	39.29	-	-	-	G	3406243	C	G	3406243	2	3	679	1	0	0	0	0	0	0	0	1	11065	900	32	2		2	OR2C1	16	3406243	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1375267	3406243	86948510	703	59604										
CLUAP1	0	genome.wustl.edu	37	chr16	3586146	3586146	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actcggaggagagtgaaattGacatggaagatgatgatgac	14	4	0	7			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	3586146	3586146	G	T	SNP	CLUAP1	ENST00000576634	human	ensembl	69_37n	1	known	missense	c.1117	p.D373Y	1.000	NULL	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351	79	0	0	70	43	38.05	-	-	-	T	3586146	G	T	3586146	3	4	679	1	0	0	0	0	1	0	0	0	3599	1290	45	2	1163	2	CLUAP1	16	3586146	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	179903	3586146	86768607	704	59605										
UBN1	0	genome.wustl.edu	37	chr16	4924718	4924718	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtcctgccaggctcccctCaataagggcctgccagaagt	10	15	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	4924718	4924718	C	T	SNP	UBN1	ENST00000586716	human	ensembl	69_37n	1	novel	missense	c.686	p.S229L	0.212	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN1	HGNC	ENSG00000118900	42	0	0	12	5	29.41	-	-	-	T	4924718	C	T	4924718	3	4	679	1	0	0	0	0	1	0	0	0	16989	813	29	2	2361	2	UBN1	16	4924718	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1338572	4924718	85430035	705	59606										
PPL	0	genome.wustl.edu	37	chr16	4938213	4938213	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tagtttttctgcttctaactCatagtcctgcatgagggaga	9	8	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	4938213	4938213	C	G	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	missense	c.2404	p.E802Q	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	71	0	0	59	31	34.44	-	-	-	G	4938213	C	G	4938213	3	3	679	1	0	0	0	0	1	0	0	0	12411	835	29	2	2878	2	PPL	16	4938213	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	13495	4938213	85416540	706	59607										
TEKT5	0	genome.wustl.edu	37	chr16	10775963	10775963	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttttgtcttcgaggtccctCtccagcacgtgctgagcatc	9	14	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	10775963	10775963	C	G	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	missense	c.750	p.E250D	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	152	0	0	73	50	40.65	-	-	-	G	10775963	C	G	10775963	3	3	679	1	0	0	0	0	1	0	0	0	15851	912	32	2	723	2	TEKT5	16	10775963	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5837750	10775963	79578790	707	59608										
RRN3	0	genome.wustl.edu	37	chr16	15180234	15180234	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaacttactaatataatactGataagttgctcaaagtcttt	5	6	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	15180234	15180234	G	A	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	silent	c.330	p.I110	0.423	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	21	0	0	36	19	34.55	-	-	-	A	15180234	G	A	15180234	2	1	679	1	0	0	0	0	0	0	0	1	13770	1280	45	2		2	RRN3	16	15180234	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4404271	15180234	75174519	708	59609										
MYH11	0	genome.wustl.edu	37	chr16	15818513	15818513	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggggcaggcacctggatgttGagagtggagatgtggcgctc	19	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	15818513	15818513	G	C	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.4128	p.L1376	0.989	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	101	0	0	18	12	40	-	-	-	C	15818513	G	C	15818513	2	2	679	1	0	0	0	0	0	0	0	1	10103	1277	45	2		2	MYH11	16	15818513	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	638279	15818513	74536240	709	59610										
MYH11	0	genome.wustl.edu	37	chr16	15853444	15853444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagctgtacctcaaagatctCaaatccagctatatccagga	7	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	15853444	15853444	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.1411	p.E471K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	76	0	0	54	39	41.94	-	-	-	T	15853444	C	T	15853444	3	4	679	1	0	0	0	0	1	0	0	0	10103	835	29	2	4683	2	MYH11	16	15853444	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	34931	15853444	74501309	710	59611										
ABCC1	0	genome.wustl.edu	37	chr16	16101738	16101738	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgctttcagaacacggtcctCgtgtgggtgccttgttttta	11	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	16101738	16101738	C	G	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	silent	c.114	p.L38	1.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	291	0	0	191	141	42.47	-	-	-	G	16101738	C	G	16101738	2	3	679	1	0	0	0	0	0	0	0	1	49	871	31	3		3	ABCC1	16	16101738	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	248294	16101738	74253015	711	59612										
DNAH3	0	genome.wustl.edu	37	chr16	20996513	20996513	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccttctcgtcagcagggaaGatgttaggcacgtcacctgt	12	11	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	20996513	20996513	G	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.7551	p.I2517M	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	83	0	0	47	22	31.88	-	-	-	C	20996513	G	C	20996513	3	2	679	1	0	0	0	0	1	0	0	0	4639	932	33	2	4858	2	DNAH3	16	20996513	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4894775	20996513	69358240	712	59613										
ZKSCAN2	0	genome.wustl.edu	37	chr16	25251885	25251885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcggctttccctgtctaattCcttgaagattttcccattgt	6	11	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	25251885	25251885	C	T	SNP	ZKSCAN2	ENST00000328086	human	ensembl	69_37n	-1	known	missense	c.2156	p.G719E	0.443	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592	92	0	0	96	46	32.17	-	-	-	T	25251885	C	T	25251885	3	4	679	1	0	0	0	0	1	0	0	0	17783	855	30	2	751	2	ZKSCAN2	16	25251885	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4255372	25251885	65102868	713	59614										
GTF3C1	0	genome.wustl.edu	37	chr16	27476706	27476706	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tataatggcttccaagatctCcaaggcagcagtcaggtctt	9	10	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	27476706	27476706	C	G	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.5230	p.E1744Q	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	52	0	0	21	14	40	-	-	-	G	27476706	C	G	27476706	3	3	679	1	0	0	0	0	1	0	0	0	6923	864	30	2	1119	2	GTF3C1	16	27476706	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2224821	27476706	62878047	714	59615										
SRCAP	0	genome.wustl.edu	37	chr16	30744671	30744671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caccgagtgctcatcttcacCcagatgacccgaatgctgga	9	14	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	30744671	30744671	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.6198	p.T2066	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	55	0	0	31	14	31.11	-	-	-	T	30744671	C	T	30744671	2	4	679	1	0	0	0	0	0	0	0	1	15226	610	22	4		4	SRCAP	16	30744671	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3267965	30744671	59610082	715	59616										
ZNF423	0	genome.wustl.edu	37	chr16	49671691	49671691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgcagcttgcgaacgtgctCgttgaggttgtagagggtgg	18	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	49671691	49671691	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.1372	p.E458K	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	51	0	0	40	20	33.33	-	-	-	T	49671691	C	T	49671691	3	4	679	1	0	0	0	0	1	0	0	0	17994	893	31	1	2502	1	ZNF423	16	49671691	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	18927020	49671691	40683062	716	59617										
CHD9	0	genome.wustl.edu	37	chr16	53288467	53288467	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccagtttgaaactgggcctaGataaagctgtgttacagagc	11	8	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	53288467	53288467	G	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	1	known	missense	c.3979	p.D1327H	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	67	0	0	63	43	39.81	-	-	-	C	53288467	G	C	53288467	3	2	679	1	0	0	0	0	1	0	0	0	3361	942	33	2	4045	2	CHD9	16	53288467	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3616776	53288467	37066286	717	59618										
COQ9	0	genome.wustl.edu	37	chr16	57490419	57490419	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtctccccttttgtagtctCtgggtctctccagtgcagca	9	13	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	57490419	57490419	C	T	SNP	COQ9	ENST00000262507	human	ensembl	69_37n	1	known	silent	c.382	p.L128	1.000	superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682	162	0	0	73	34	31.78	-	-	-	T	57490419	C	T	57490419	2	4	679	1	0	0	0	0	0	0	0	1	3781	912	32	2		2	COQ9	16	57490419	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4201952	57490419	32864334	718	59619										
MMP15	0	genome.wustl.edu	37	chr16	58074441	58074441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cctccttctctccccaaaagGaaacaacctcttcctggtgg	6	16	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	58074441	58074441	G	A	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	1	known	missense	c.749	p.G250E	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	22	0	0	15	12	44.44	-	-	-	A	58074441	G	A	58074441	3	1	679	1	0	0	0	0	1	0	0	0	9725	1188	41	2	767	2	MMP15	16	58074441	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	584022	58074441	32280312	719	59620										
CNOT1	0	genome.wustl.edu	37	chr16	58573836	58573836	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatacacttatcataaatctGagctacatcatctgttgccc	4	11	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	58573836	58573836	G	A	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	nonsense	c.4828	p.Q1610*	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	42	0	0	39	31	44.29	-	-	-	A	58573836	G	A	58573836	4	1	679	1	0	0	0	0	0	1	0	0	3647	1299	45	2	2362	2	CNOT1	16	58573836	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	499395	58573836	31780917	720	59621										
FHOD1	0	genome.wustl.edu	37	chr16	67268019	67268019	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcacgggtagggagctcccaGatgggctcagccttggggct	17	11	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	67268019	67268019	G	C	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	missense	c.1587	p.I529M	0.008	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	25	0	0	14	11	44	-	-	-	C	67268019	G	C	67268019	3	2	679	1	0	0	0	0	1	0	0	0	5928	932	33	2	1947	2	FHOD1	16	67268019	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8694183	67268019	23086734	721	59622										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67861660	67861660	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttcctgtggggcagccatGaggaagtgactctgcccaag	13	11	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	67861660	67861660	G	C	SNP	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	1	known	missense	c.1741	p.E581Q	0.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	35	0	0	16	10	38.46	-	-	-	C	67861660	G	C	67861660	3	2	679	1	0	0	0	0	1	0	0	0	16728	1291	45	2	1795	2	TSNAXIP1	16	67861660	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	593641	67861660	22493093	722	59623										
NRN1L	0	genome.wustl.edu	37	chr16	67920004	67920004	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtccgaataacttgcacactCtgtgcggtgccccggtgcat	11	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	67920004	67920004	C	T	SNP	NRN1L	ENST00000339176	human	ensembl	69_37n	1	known	silent	c.340	p.L114	0.067	NULL	NULL	-	no_errors	NRN1L	HGNC	ENSG00000188038	20	0	0	13	12	48	-	-	-	T	67920004	C	T	67920004	2	4	679	1	0	0	0	0	0	0	0	1	10732	912	32	2		2	NRN1L	16	67920004	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	58344	67920004	22434749	723	59624										
COG8	0	genome.wustl.edu	37	chr16	69369072	69369072	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atggcagtcaggatggaccgGagccaagcatctcgggcctg	15	11	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	69369072	69369072	G	C	SNP	COG8	ENST00000306875	human	ensembl	69_37n	-1	known	silent	c.765	p.L255	1.000	pfam_Dor1,superfamily_Cullin_repeat-like_dom,pirsf_COG_su8	pfam_Dor1,superfamily_Cullin_repeat-like_dom,pirsf_COG_su8	-	no_errors	COG8	HGNC	ENSG00000213380	29	0	0	26	14	35	-	-	-	C	69369072	G	C	69369072	2	2	679	1	0	0	0	0	0	0	0	1	3694	1161	41	2		2	COG8	16	69369072	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1449068	69369072	20985681	724	59625										
NIP7	0	genome.wustl.edu	37	chr16	69374200	69374200	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cccacaagtttcggttgcacGtcacagctctggattacctt	8	13	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	69374200	69374200	G	C	SNP	NIP7	ENST00000254940	human	ensembl	69_37n	1	known	missense	c.247	p.V83L	0.991	pfam_Rbsml_synth_fac_NIP7-like,pirsf_Ribosomal_synth_fac_NIP7	pfam_Rbsml_synth_fac_NIP7-like,superfamily_PUA-like_domain,smart_PUA,pirsf_Ribosomal_synth_fac_NIP7,pfscan_PUA	-	no_errors	NIP7	HGNC	ENSG00000132603	27	0	0	45	34	43.04	-	-	-	C	69374200	G	C	69374200	3	2	679	1	0	0	0	0	1	0	0	0	10493	1145	40	3	257	3	NIP7	16	69374200	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5128	69374200	20980553	725	59626										
PDPR	0	genome.wustl.edu	37	chr16	70166122	70166122	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcatcctgtctgggggctttGagaagaacccgaaaccaatt	11	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	70166122	70166122	G	C	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.916	p.E306Q	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	41	0	0	24	14	36.84	-	-	-	C	70166122	G	C	70166122	3	2	679	1	0	0	0	0	1	0	0	0	11762	1291	45	2	942	2	PDPR	16	70166122	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	791922	70166122	20188631	726	59627										
ZNF19	0	genome.wustl.edu	37	chr16	71510090	71510090	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttctctgagggacactcttCagctgaccatgtgacatcat	9	11	4	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	71510090	71510090	C	T	SNP	ZNF19	ENST00000288177	human	ensembl	69_37n	-1	known	silent	c.360	p.L120	0.160	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF19	HGNC	ENSG00000157429	153	0	0	105	61	36.53	-	-	-	T	71510090	C	T	71510090	2	4	679	1	0	0	0	0	0	0	0	1	17851	813	29	2		2	ZNF19	16	71510090	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1343968	71510090	18844663	727	59628										
CHST4	0	genome.wustl.edu	37	chr16	71571614	71571614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccctatgaaaaggtttctcGacttcagaaagcctgtggcg	11	10	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	71571614	71571614	G	A	SNP	CHST4	ENST00000338482	human	ensembl	69_37n	1	known	missense	c.1034	p.R345Q	0.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST4	HGNC	ENSG00000140835	36	0	0	14	9	39.13	-	-	-	A	71571614	G	A	71571614	3	1	679	1	0	0	0	0	1	0	0	0	3435	1058	37	1	1036	1	CHST4	16	71571614	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	61524	71571614	18783139	728	59629										
PKD1L2	0	genome.wustl.edu	37	chr16	81164113	81164113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agggtggtgttggcccacttGaagaactctcggaagccgag	15	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	81164113	81164113	G	C	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	missense	c.5994	p.F1998L	0.006	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	24	0	0	26	13	33.33	-	-	-	C	81164113	G	C	81164113	3	2	679	1	0	0	0	0	1	0	0	0	12039	1281	45	2	1420	2	PKD1L2	16	81164113	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	9592499	81164113	9190640	729	59630										
PLCG2	0	genome.wustl.edu	37	chr16	81953119	81953119	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaggtaaagcattgtcgcatCaaccgggacggccggcactt	12	11	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	81953119	81953119	C	G	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.2085	p.I695M	0.996	pfam_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,prints_SH2,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	24	0	0	25	15	37.5	-	-	-	G	81953119	C	G	81953119	3	3	679	1	0	0	0	0	1	0	0	0	12110	816	29	2	2159	2	PLCG2	16	81953119	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	789006	81953119	8401634	730	59631										
CDK10	0	genome.wustl.edu	37	chr16	89757939	89757939	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgaaggaggtggttgtgggGaaccacctggagaggtacgt	18	6	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	16	89757939	89757939	G	A	SNP	CDK10	ENST00000353379	human	ensembl	69_37n	1	known	silent	c.321	p.G107	0.977	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK10	HGNC	ENSG00000185324	36	0	0	20	9	31.03	-	-	-	A	89757939	G	A	89757939	2	1	679	1	0	0	0	0	0	0	0	1	3154	1161	41	2		2	CDK10	16	89757939	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7804820	89757939	596814	731	59632										
ATP2A3	0	genome.wustl.edu	37	chr17	3838501	3838501	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcaccagctggtagaagttGatgtgaggtccctcggcgtc	13	11	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	3838501	3838501	G	C	SNP	ATP2A3	ENST00000359983	human	ensembl	69_37n	-1	known	missense	c.2595	p.I865M	1.000	pfam_ATPase_P-typ_cation-transptr_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A3	HGNC	ENSG00000074370	25	0	0	4	17	80.95	-	-	-	C	3838501	G	C	3838501	3	2	679	1	0	0	0	0	1	0	0	0	1142	1280	45	2	635	2	ATP2A3	17	3838501	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		3838501	77356709	732	59633										
ALOX12	0	genome.wustl.edu	37	chr17	6905055	6905055	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagatccagtatcacttgctGaacactcacctggtggctga	10	11	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	6905055	6905055	G	A	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	silent	c.1086	p.L362	0.995	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	94	0	0	17	24	58.54	-	-	-	A	6905055	G	A	6905055	2	1	679	1	0	0	0	0	0	0	0	1	536	1277	45	2		2	ALOX12	17	6905055	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3066554	6905055	74290155	733	59634										
ALOX12	0	genome.wustl.edu	37	chr17	6913414	6913414	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgtcttcaaatggccatctCatggcatctgagtcgccgcc	9	14	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	6913414	6913414	C	G	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	1	known	nonsense	c.1781	p.S594*	1.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	58	0	0	5	18	78.26	-	-	-	G	6913414	C	G	6913414	4	3	679	1	0	0	0	0	0	1	0	0	536	838	29	2	1831	2	ALOX12	17	6913414	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8359	6913414	74281796	734	59635										
MYH13	0	genome.wustl.edu	37	chr17	10233724	10233724	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcctctccatcatcttcttGaactccacccgcatcaggta	4	17	5	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	10233724	10233724	G	C	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.2415	p.F805L	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	86	0	0	32	48	60	-	-	-	C	10233724	G	C	10233724	3	2	679	1	0	0	0	0	1	0	0	0	10104	1281	45	2	3485	2	MYH13	17	10233724	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3320310	10233724	70961486	735	59636										
DNAH9	0	genome.wustl.edu	37	chr17	11778415	11778415	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aactgtgagcgctggccactCatggttgaccctcagctaca	10	13	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	11778415	11778415	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.10392	p.L3464	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	66	0	0	19	26	57.78	-	-	-	G	11778415	C	G	11778415	2	3	679	1	0	0	0	0	0	0	0	1	4643	813	29	2		2	DNAH9	17	11778415	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1544691	11778415	69416795	736	59637										
NCOR1	0	genome.wustl.edu	37	chr17	15983797	15983797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttggcttcggggagaaaattCttcctgcttgatgtagggca	13	7	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	15983797	15983797	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.3325	p.E1109K	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	105	0	0	27	56	67.47	-	-	-	T	15983797	C	T	15983797	3	4	679	1	0	0	0	0	1	0	0	0	10307	922	32	2	4085	2	NCOR1	17	15983797	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4205382	15983797	65211413	737	59638										
LRRC48	0	genome.wustl.edu	37	chr17	17887182	17887182	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctggcagtttgagaacttGaggaagctgcagctggacaa	13	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	17887182	17887182	G	C	SNP	LRRC48	ENST00000313838	human	ensembl	69_37n	1	known	missense	c.201	p.L67F	0.960	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962	62	0	0	23	30	56.6	-	-	-	C	17887182	G	C	17887182	3	2	679	1	0	0	0	0	1	0	0	0	9071	1281	45	2	207	2	LRRC48	17	17887182	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1903385	17887182	63308028	738	59639										
ALDH3A2	0	genome.wustl.edu	37	chr17	19555064	19555064	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	accccttcgttctcaccattCagccactgataggagccatc	6	16	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	19555064	19555064	C	T	SNP	ALDH3A2	ENST00000339618	human	ensembl	69_37n	1	known	nonsense	c.358	p.Q120*	0.994	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210	70	0	0	74	44	37.29	-	-	-	T	19555064	C	T	19555064	4	4	679	1	0	0	0	0	0	1	0	0	498	827	29	2	364	2	ALDH3A2	17	19555064	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1667882	19555064	61640146	739	59640										
KIAA0100	0	genome.wustl.edu	37	chr17	26964013	26964013	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggatgctgctgtgataggtGatggagagcatggaaaggct	17	5	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	26964013	26964013	G	A	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.1947	p.I649	0.999	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	47	0	0	31	16	34.04	-	-	-	A	26964013	G	A	26964013	2	1	679	1	0	0	0	0	0	0	0	1	8206	1280	45	2		2	KIAA0100	17	26964013	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7408949	26964013	54231197	740	59641										
PHF12	0	genome.wustl.edu	37	chr17	27234610	27234610	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgcatctccggccctcacctCatcgtagaatatgcaggcat	8	15	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	27234610	27234610	C	T	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.2539	p.E847K	1.000	superfamily_SMAD_FHA_domain,pfscan_FHA_dom	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	25	0	0	32	18	36	-	-	-	T	27234610	C	T	27234610	3	4	679	1	0	0	0	0	1	0	0	0	11897	835	29	2	487	2	PHF12	17	27234610	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	270597	27234610	53960600	741	59642										
EFCAB5	0	genome.wustl.edu	37	chr17	28380671	28380671	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaggttactgacagaacaaGaaacacacagagagtcaact	9	8	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	28380671	28380671	G	C	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.1699	p.E567Q	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	141	0	0	128	78	37.86	-	-	-	C	28380671	G	C	28380671	3	2	679	1	0	0	0	0	1	0	0	0	4973	943	33	2	1737	2	EFCAB5	17	28380671	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1146061	28380671	52814539	742	59643										
TBC1D29	0	genome.wustl.edu	37	chr17	28890393	28890393	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaatcagtgtctcattatctCtaccatctctaccatctcgg	5	13	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	28890393	28890393	C	G	SNP	TBC1D29	ENST00000579181	human	ensembl	69_37n	1	known	missense	c.403	p.L135V	0.058	NULL	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733	34	0	0	24	17	41.46	-	-	-	G	28890393	C	G	28890393	3	3	679	1	0	0	0	0	1	0	0	0	15710	912	32	2	421	2	TBC1D29	17	28890393	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	509722	28890393	52304817	743	59644										
SLFN13	0	genome.wustl.edu	37	chr17	33772305	33772305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagatctacagtataatgaaGaactaaggctgcaaatgcgg	10	7	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	33772305	33772305	G	A	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	missense	c.395	p.S132F	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	23	0	0	8	15	65.22	-	-	-	A	33772305	G	A	33772305	3	1	679	1	0	0	0	0	1	0	0	0	14825	942	33	2	2314	2	SLFN13	17	33772305	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4881912	33772305	47422905	744	59645										
AARSD1	0	genome.wustl.edu	37	chr17	41123659	41123659	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cacatgagccagctccatctCttcatccccttcccagtctc	4	19	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	41123659	41123659	C	G	SNP	AARSD1	ENST00000409399	human	ensembl	69_37n	-1	known	missense	c.472	p.E158Q	1.000	NULL	pfam_tRNA_SAD,pfam_CS_domain,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS-like_domain,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	AARSD1	HGNC	ENSG00000108825	119	0	0	34	57	62.64	-	-	-	G	41123659	C	G	41123659	3	3	679	1	0	0	0	0	1	0	0	0	21	922	32	2	1383	2	AARSD1	17	41123659	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	7351354	41123659	40071551	745	59646										
GPATCH8	0	genome.wustl.edu	37	chr17	42478352	42478352	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcaagggaccctccatcctGagggtcttcatcctcttttt	9	13	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	42478352	42478352	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	nonsense	c.1093	p.Q365*	0.999	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	68	0	0	19	31	62	-	-	-	A	42478352	G	A	42478352	4	1	679	1	0	0	0	0	0	1	0	0	6644	1299	45	2	3419	2	GPATCH8	17	42478352	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1354693	42478352	38716858	746	59647										
HOXB9	0	genome.wustl.edu	37	chr17	46700309	46700309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcttcattttcatccgccGgttctgaaaccagattttga	6	10	4	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	46700309	46700309	G	A	SNP	HOXB9	ENST00000311177	human	ensembl	69_37n	-1	known	missense	c.706	p.R236W	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB9	HGNC	ENSG00000170689	280	1	0.36	1379	249	15.29	-	-	-	A	46700309	G	A	46700309	3	1	679	1	0	0	0	0	1	0	0	0	7359	1115	39	1	50	1	HOXB9	17	46700309	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4221957	46700309	34494901	747	59648										
BRIP1	0	genome.wustl.edu	37	chr17	59926597	59926597	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agcagataactttgcagccaGagtggttttttcaggggagt	13	6	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	59926597	59926597	G	C	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.400	p.L134V	0.806	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	110	0	0	60	41	40.59	-	-	-	C	59926597	G	C	59926597	3	2	679	1	0	0	0	0	1	0	0	0	1522	933	33	2	3413	2	BRIP1	17	59926597	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	13226288	59926597	21268613	748	59649										
MRC2	0	genome.wustl.edu	37	chr17	60767008	60767008	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgatgccctcctgctgtgtGagagccgcaatgccagcctg	12	14	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	60767008	60767008	G	A	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	missense	c.3460	p.E1154K	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	8	0	0	6	4	40	-	-	-	A	60767008	G	A	60767008	3	1	679	1	0	0	0	0	1	0	0	0	9830	1291	45	2	3554	2	MRC2	17	60767008	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	840411	60767008	20428202	749	59650										
FTSJ3	0	genome.wustl.edu	37	chr17	61897324	61897324	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgtaggtgacatggcgtttCtccttgccaagcccagcctt	10	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	61897324	61897324	C	G	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	missense	c.2382	p.E794D	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	419	0	0	121	77	38.89	-	-	-	G	61897324	C	G	61897324	3	3	679	1	0	0	0	0	1	0	0	0	6138	912	32	2	165	2	FTSJ3	17	61897324	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1130316	61897324	19297886	750	59651										
BPTF	0	genome.wustl.edu	37	chr17	65908442	65908442	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttaatgaaagaaacagctCcgaaacaaaatcgcatttgc	6	8	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	65908442	65908442	C	G	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.4820	p.S1607C	0.003	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	14	0	0	23	15	39.47	-	-	-	G	65908442	C	G	65908442	3	3	679	1	0	0	0	0	1	0	0	0	1503	855	30	2	4870	2	BPTF	17	65908442	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4011118	65908442	15286768	751	59652										
ABCA10	0	genome.wustl.edu	37	chr17	67148188	67148188	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgaaaacatcctttacctttCctgccaagcagcctgtggga	8	13	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	67148188	67148188	C	G	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.4393	p.E1465Q	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	100	0	0	121	82	40.39	-	-	-	G	67148188	C	G	67148188	3	3	679	1	0	0	0	0	1	0	0	0	29	864	30	2	254	2	ABCA10	17	67148188	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1239746	67148188	14047022	752	59653										
ABCA10	0	genome.wustl.edu	37	chr17	67190127	67190127	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagtattataaatagtggctGatcctataaatagaaattta	7	3	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	67190127	67190127	G	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1349	p.S450L	0.088	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	62	0	0	51	28	35.44	-	-	-	A	67190127	G	A	67190127	3	1	679	1	0	0	0	0	1	0	0	0	29	1294	45	2	3390	2	ABCA10	17	67190127	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	41939	67190127	14005083	753	59654										
OTOP3	0	genome.wustl.edu	37	chr17	72943193	72943193	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaaccctacccgcagcctgGatgtggtgctgctaatgggt	13	11	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	72943193	72943193	G	C	SNP	OTOP3	ENST00000328801	human	ensembl	69_37n	1	known	missense	c.1243	p.D415H	1.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938	46	0	0	6	19	76	-	-	-	C	72943193	G	C	72943193	3	2	679	1	0	0	0	0	1	0	0	0	11380	1174	41	2	1265	2	OTOP3	17	72943193	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5753066	72943193	8252017	754	59655										
TRIM47	0	genome.wustl.edu	37	chr17	73872004	73872004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccgagtccagcttctgtggCccatcctcgttgccacccgg	10	17	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	73872004	73872004	C	T	SNP	TRIM47	ENST00000254816	human	ensembl	69_37n	-1	known	silent	c.1179	p.G393	0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM47	HGNC	ENSG00000132481	10	0	0	15	11	42.31	-	-	-	T	73872004	C	T	73872004	2	4	679	1	0	0	0	0	0	0	0	1	16618	726	26	4		4	TRIM47	17	73872004	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	928811	73872004	7323206	755	59656										
EVPL	0	genome.wustl.edu	37	chr17	74004966	74004966	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggatcctcaaggtcagctgCcgcagctccctctccacggc	10	17	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	74004966	74004966	C	T	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	silent	c.4320	p.R1440	0.995	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	40	0	0	37	14	27.45	-	-	-	T	74004966	C	T	74004966	2	4	679	1	0	0	0	0	0	0	0	1	5329	726	26	4		4	EVPL	17	74004966	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	132962	74004966	7190244	756	59657										
QRICH2	0	genome.wustl.edu	37	chr17	74271964	74271964	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcagctggccattgctgctGagggatggcggcctgtgcac	17	11	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	74271964	74271964	G	C	SNP	QRICH2	ENST00000447564	human	ensembl	69_37n	-1	putative	missense	c.1243	p.Q415E	0.000	NULL	NULL	-	no_start_codon	QRICH2	HGNC	ENSG00000129646	33	0	0	32	6	15.79	-	-	-	C	74271964	G	C	74271964	3	2	679	1	0	0	0	0	1	0	0	0	12963	1277	45	2	79	2	QRICH2	17	74271964	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	266998	74271964	6923246	757	59658										
RHBDF2	0	genome.wustl.edu	37	chr17	74471187	74471187	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcaccagcagcgtgatgatGacatggacgaaggtcagcca	12	10	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	74471187	74471187	G	C	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	silent	c.1239	p.V413	0.912	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	49	0	0	68	12	15	-	-	-	C	74471187	G	C	74471187	2	2	679	1	0	0	0	0	0	0	0	1	13404	1277	45	2		2	RHBDF2	17	74471187	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	199223	74471187	6724023	758	59659										
RHBDF2	0	genome.wustl.edu	37	chr17	74473347	74473347	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcagagagtgggggggactCaaagacatcatcaggcatgg	17	7	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	17	74473347	74473347	C	G	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.922	p.E308Q	1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	14	0	0	44	8	15.38	-	-	-	G	74473347	C	G	74473347	3	3	679	1	0	0	0	0	1	0	0	0	13404	835	29	2	1696	2	RHBDF2	17	74473347	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2160	74473347	6721863	759	59660										
TXNDC2	0	genome.wustl.edu	37	chr18	9887951	9887951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	catcagaccattcttccatgCcctgtctgtgaagcatgagg	9	12	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	9887951	9887951	C	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	1	known	missense	c.1475	p.A492V	0.217	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	50	0	0	10	15	60	-	-	-	T	9887951	C	T	9887951	3	4	679	1	0	0	0	0	1	0	0	0	16894	739	26	4	1481	4	TXNDC2	18	9887951	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		9887951	68189297	760	59661										
APCDD1	0	genome.wustl.edu	37	chr18	10471549	10471549	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgaagtaaggtcaggcccaGagttcatcacaaggtcctac	11	10	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	10471549	10471549	G	C	SNP	APCDD1	ENST00000355285	human	ensembl	69_37n	1	known	missense	c.265	p.E89Q	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	38	0	0	21	29	58	-	-	-	C	10471549	G	C	10471549	3	2	679	1	0	0	0	0	1	0	0	0	766	943	33	2	275	2	APCDD1	18	10471549	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	583598	10471549	67605699	761	59662										
KLHL14	0	genome.wustl.edu	37	chr18	30260213	30260213	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcacgttttgtgttcatatCttgttttcgagcccagacat	8	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	30260213	30260213	C	G	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	missense	c.1507	p.D503H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	85	0	0	33	63	65.62	-	-	-	G	30260213	C	G	30260213	3	3	679	1	0	0	0	0	1	0	0	0	8423	913	32	2	391	2	KLHL14	18	30260213	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	19788664	30260213	47817035	762	59663										
CCDC11	0	genome.wustl.edu	37	chr18	47769351	47769351	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctccttttcaagtctcagctCcttgtccttctcagccaact	4	16	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	47769351	47769351	C	G	SNP	CCDC11	ENST00000398545	human	ensembl	69_37n	-1	known	missense	c.1132	p.E378Q	0.013	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361	77	0	0	46	71	60.68	-	-	-	G	47769351	C	G	47769351	3	3	679	1	0	0	0	0	1	0	0	0	2771	864	30	2	424	2	CCDC11	18	47769351	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	17509138	47769351	30307897	763	59664										
ME2	0	genome.wustl.edu	37	chr18	48458669	48458669	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcagtccatttgggccagtGaaacttacagatgggcgagt	14	8	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	48458669	48458669	G	A	SNP	ME2	ENST00000321341	human	ensembl	69_37n	1	known	silent	c.1356	p.V452	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	80	0	0	32	58	64.44	-	-	-	A	48458669	G	A	48458669	2	1	679	1	0	0	0	0	0	0	0	1	9489	1277	45	2		2	ME2	18	48458669	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	689318	48458669	29618579	764	59665										
SMAD4	0	genome.wustl.edu	37	chr18	48584560	48584560	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcagatagcatcagggcctCagccaggacagcagcagaat	12	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	48584560	48584560	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	nonsense	c.733	p.Q245*	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	99	0	0	16	42	72.41	-	-	-	T	48584560	C	T	48584560	4	4	679	1	0	0	0	0	0	1	0	0	14849	827	29	2	751	2	SMAD4	18	48584560	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	125891	48584560	29492688	765	59666										
ALPK2	0	genome.wustl.edu	37	chr18	56202122	56202122	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttgtttctcttctgtgtgtGataatgatgtttcgagtttg	10	5	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	56202122	56202122	G	C	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	nonsense	c.5297	p.S1766*	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	136	0	0	39	87	69.05	-	-	-	C	56202122	G	C	56202122	4	2	679	1	0	0	0	0	0	1	0	0	545	1294	45	2	1251	2	ALPK2	18	56202122	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	7617562	56202122	21875126	766	59667										
ZNF407	0	genome.wustl.edu	37	chr18	72776056	72776056	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgcccagatcatcatgcagGaggcgcagggcgagcacatg	15	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	18	72776056	72776056	G	C	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.6379	p.E2127Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	28	0	0	2	7	77.78	-	-	-	C	72776056	G	C	72776056	3	2	679	1	0	0	0	0	1	0	0	0	17983	1175	41	2	6539	2	ZNF407	18	72776056	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	16573934	72776056	5301192	767	59668										
RNF126	0	genome.wustl.edu	37	chr19	648960	648960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cggtggggggcctgtgttttCaaactgattgaggagctgaa	16	6	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	648960	648960	C	G	SNP	RNF126	ENST00000292363	human	ensembl	69_37n	-1	known	missense	c.592	p.E198Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF126	HGNC	ENSG00000070423	8	0	0	23	15	39.47	-	-	-	G	648960	C	G	648960	3	3	679	1	0	0	0	0	1	0	0	0	13521	835	29	2	355	2	RNF126	19	648960	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		648960	58480023	768	59669										
PTBP1	0	genome.wustl.edu	37	chr19	805560	805560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcccacctttgccattcctCaagctgcaggtattcaaacg	6	15	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	805560	805560	C	G	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	missense	c.961	p.Q321E	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	57	0	0	94	70	42.42	-	-	-	G	805560	C	G	805560	3	3	679	1	0	0	0	0	1	0	0	0	12805	827	29	2	995	2	PTBP1	19	805560	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	156600	805560	58323423	769	59670										
PCSK4	0	genome.wustl.edu	37	chr19	1486858	1486858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcggctgcactcacgatctgGgggtcggtggccacgccgct	16	14	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	1486858	1486858	G	T	SNP	PCSK4	ENST00000588195	human	ensembl	69_37n	-1	known	missense	c.1048	p.P350T	0.985	NULL	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept	-	no_errors	PCSK4	HGNC	ENSG00000115257	18	0	0	10	10	50	-	-	-	T	1486858	G	T	1486858	3	4	679	1	0	0	0	0	1	0	0	0	11675	1219	43	4	1237	4	PCSK4	19	1486858	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	681298	1486858	57642125	770	59671										
MBD3	0	genome.wustl.edu	37	chr19	1582691	1582691	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgaaggcgttcaggccgctCagcttcttctcccagaagag	11	13	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	1582691	1582691	C	T	SNP	MBD3	ENST00000156825	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	0.987	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655	19	0	0	8	6	42.86	-	-	-	T	1582691	C	T	1582691	2	4	679	1	0	0	0	0	0	0	0	1	9415	813	29	2		2	MBD3	19	1582691	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	95833	1582691	57546292	771	59672										
CHAF1A	0	genome.wustl.edu	37	chr19	4409318	4409318	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagttggcatttcctggagaGaccctttcagacattccttg	9	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	4409318	4409318	G	A	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	silent	c.522	p.E174	0.939	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	69	0	0	48	30	38.46	-	-	-	A	4409318	G	A	4409318	2	1	679	1	0	0	0	0	0	0	0	1	3340	933	33	2		2	CHAF1A	19	4409318	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2826627	4409318	54719665	772	59673										
ARHGEF18	0	genome.wustl.edu	37	chr19	7529468	7529468	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcagtttcaagaagaaagtCagcagcactgaccccaggcc	11	12	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	7529468	7529468	C	G	SNP	ARHGEF18	ENST00000359920	human	ensembl	69_37n	1	known	silent	c.2232	p.V744	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	23	0	0	29	17	36.96	-	-	-	G	7529468	C	G	7529468	2	3	679	1	0	0	0	0	0	0	0	1	903	813	29	2		2	ARHGEF18	19	7529468	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3120150	7529468	51599515	773	59674										
XAB2	0	genome.wustl.edu	37	chr19	7692239	7692239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgcgtgatgggcagtgcccGgagggcacggtcgaaggtgc	19	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	7692239	7692239	G	A	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	missense	c.412	p.R138W	0.774	smart_HAT	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	22	0	0	30	15	33.33	-	-	-	A	7692239	G	A	7692239	3	1	679	1	0	0	0	0	1	0	0	0	17515	1115	39	1	2219	1	XAB2	19	7692239	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	162771	7692239	51436744	774	59675										
CLEC4M	0	genome.wustl.edu	37	chr19	7833782	7833782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcgggaatgaagactgtgcgGaatttagtggcagtggctgg	18	5	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	7833782	7833782	G	C	SNP	CLEC4M	ENST00000327325	human	ensembl	69_37n	1	known	missense	c.1108	p.E370Q	0.004	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4M	HGNC	ENSG00000104938	115	0	0	43	46	51.69	-	-	-	C	7833782	G	C	7833782	3	2	679	1	0	0	0	0	1	0	0	0	3548	1175	41	2	1155	2	CLEC4M	19	7833782	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	141543	7833782	51295201	775	59676										
MUC16	0	genome.wustl.edu	37	chr19	9070790	9070790	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttgtcatgatgggggaggtGaagagcctggtgatcattcc	15	6	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	9070790	9070790	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16656	p.F5552L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	245	0	0	210	123	36.83	-	-	-	C	9070790	G	C	9070790	3	2	679	1	0	0	0	0	1	0	0	0	10045	1281	45	2	27195	2	MUC16	19	9070790	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1237008	9070790	50058193	776	59677										
ILF3	0	genome.wustl.edu	37	chr19	10791989	10791989	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgcccagcaaaaagaagaaGaagattcagaagaaaggtac	10	7	1	6			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	10791989	10791989	G	C	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	missense	c.1164	p.K388N	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	24	0	0	24	25	51.02	-	-	-	C	10791989	G	C	10791989	3	2	679	1	0	0	0	0	1	0	0	0	7766	933	33	2	1202	2	ILF3	19	10791989	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1721199	10791989	48336994	777	59678										
SMARCA4	0	genome.wustl.edu	37	chr19	11141449	11141449	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcatgctgctgaaaaccttCaacgagcccggctctgagta	11	12	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	11141449	11141449	C	A	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	missense	c.3426	p.F1142L	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	19	0	0	19	11	36.67	-	-	-	A	11141449	C	A	11141449	3	1	679	1	0	0	0	0	1	0	0	0	14859	825	29	2	3520	2	SMARCA4	19	11141449	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	349460	11141449	47987534	778	59679										
ZNF441	0	genome.wustl.edu	37	chr19	11891007	11891007	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atctcttaattgctacgttaGagttgacagtgaacacaaac	7	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	11891007	11891007	G	C	SNP	ZNF441	ENST00000357901	human	ensembl	69_37n	1	known	missense	c.368	p.R123T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	52	0	0	118	75	38.66	-	-	-	C	11891007	G	C	11891007	3	2	679	1	0	0	0	0	1	0	0	0	18010	942	33	2	382	2	ZNF441	19	11891007	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	749558	11891007	47237976	779	59680										
ZNF20	0	genome.wustl.edu	37	chr19	12243837	12243837	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggggtttctctccactgtgCgtcctttcatgaatttgaag	10	9	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	12243837	12243837	C	T	SNP	ZNF20	ENST00000334213	human	ensembl	69_37n	-1	known	silent	c.1164	p.T388	0.076	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	63	0	0	118	66	35.87	-	-	-	T	12243837	C	T	12243837	2	4	679	1	0	0	0	0	0	0	0	1	17857	755	27	1		1	ZNF20	19	12243837	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	352830	12243837	46885146	780	59681										
DHPS	0	genome.wustl.edu	37	chr19	12792434	12792434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcttggaagccggtggtgccGaaggcctccagcagtgcgcg	17	12	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	12792434	12792434	G	C	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	missense	c.147	p.F49L	0.838	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	73	0	0	29	19	39.58	-	-	-	C	12792434	G	C	12792434	3	2	679	1	0	0	0	0	1	0	0	0	4521	1049	37	3	998	3	DHPS	19	12792434	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	548597	12792434	46336549	781	59682										
RNASEH2A	0	genome.wustl.edu	37	chr19	12918047	12918047	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaccctattggagagcgagcGggaaaggctgtttgcgaaaa	15	7	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	12918047	12918047	G	C	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	1	known	missense	c.227	p.R76P	1.000	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	230	0	0	79	50	38.76	-	-	-	C	12918047	G	C	12918047	3	2	679	1	0	0	0	0	1	0	0	0	13498	1116	39	3	237	3	RNASEH2A	19	12918047	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	125613	12918047	46210936	782	59683										
SYDE1	0	genome.wustl.edu	37	chr19	15222217	15222217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgcagcggtctgcctatctGaggacctgtaccccgatatc	11	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	15222217	15222217	G	A	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	missense	c.1384	p.E462K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	138	0	0	52	32	37.65	-	-	-	A	15222217	G	A	15222217	3	1	679	1	0	0	0	0	1	0	0	0	15527	1291	45	2	1402	2	SYDE1	19	15222217	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2304170	15222217	43906766	783	59684										
CYP4F3	0	genome.wustl.edu	37	chr19	15770099	15770099	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggctcacgctgctgcgcttCcgcgtcctgcctgaccacac	11	18	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	15770099	15770099	C	G	SNP	CYP4F3	ENST00000221307	human	ensembl	69_37n	1	known	missense	c.1467	p.F489L	0.977	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529	29	0	0	13	9	40.91	-	-	-	G	15770099	C	G	15770099	3	3	679	1	0	0	0	0	1	0	0	0	4221	854	30	2	1513	2	CYP4F3	19	15770099	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	547882	15770099	43358884	784	59685										
ABHD8	0	genome.wustl.edu	37	chr19	17403583	17403583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttgaccgtctcagggcattCcagcatcaccatgtggctgc	11	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	17403583	17403583	C	T	SNP	ABHD8	ENST00000247706	human	ensembl	69_37n	-1	known	missense	c.1207	p.E403K	1.000	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220	17	0	0	10	11	52.38	-	-	-	T	17403583	C	T	17403583	3	4	679	1	0	0	0	0	1	0	0	0	87	864	30	2	116	2	ABHD8	19	17403583	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1633484	17403583	41725400	785	59686										
PLVAP	0	genome.wustl.edu	37	chr19	17476094	17476094	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctctggggcctgcaagcccaCcttggtcttgatgcaggtgt	13	12	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	17476094	17476094	C	G	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	splice_site	c.1179+1	e3+1	1.000	-	-	-	no_errors	PLVAP	HGNC	ENSG00000130300	20	0	0	31	24	43.64	-	-	-	G	17476094	C	G	17476094	5	3	679	1	0	0	0	0	0	0	1	0	12190	521	18	4	164	4	PLVAP	19	17476094	Splice_Site	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	72511	17476094	41652889	786	59687										
FKBP8	0	genome.wustl.edu	37	chr19	18652654	18652654	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggtcatcctcttcctcctCttcctcctcctcttcctcct	2	21	4	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	18652654	18652654	C	G	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.214	p.E72Q	1.000	NULL	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	23	0	0	14	15	50	-	-	-	G	18652654	C	G	18652654	3	3	679	1	0	0	0	0	1	0	0	0	5960	922	32	2	1146	2	FKBP8	19	18652654	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1176560	18652654	40476329	787	59688										
DDX49	0	genome.wustl.edu	37	chr19	19035063	19035063	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acctgccagattctgtgcatGatgctgcgcaaattcagctt	9	11	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	19035063	19035063	G	A	SNP	DDX49	ENST00000247003	human	ensembl	69_37n	1	known	missense	c.798	p.M266I	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX49	HGNC	ENSG00000105671	17	0	0	17	11	39.29	-	-	-	A	19035063	G	A	19035063	3	1	679	1	0	0	0	0	1	0	0	0	4397	1290	45	2	824	2	DDX49	19	19035063	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	382409	19035063	40093920	788	59689										
ZNF737	0	genome.wustl.edu	37	chr19	20728347	20728347	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtttctctccagtatgaattCtcttatgtgtagtaaggtgt	9	6	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	20728347	20728347	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	missense	c.662	p.R221K	0.898	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	25	0	0	82	53	39.26	-	-	-	T	20728347	C	T	20728347	3	4	679	1	0	0	0	0	1	0	0	0	18220	913	32	2	952	2	ZNF737	19	20728347	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1693284	20728347	38400636	789	59690										
ZNF626	0	genome.wustl.edu	37	chr19	20808204	20808204	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtcctctcttttgtccgtttGaatttggaaattgatgaagg	10	6	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	20808204	20808204	G	C	SNP	ZNF626	ENST00000305570	human	ensembl	69_37n	-1	known	nonsense	c.479	p.S160*	0.118	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171	122	0	0	196	118	37.58	-	-	-	C	20808204	G	C	20808204	4	2	679	1	0	0	0	0	0	1	0	0	18146	1294	45	2	1111	2	ZNF626	19	20808204	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	79857	20808204	38320779	790	59691										
ZNF430	0	genome.wustl.edu	37	chr19	21240097	21240097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgtggcagagcttttaaccGgtcctcacaccttactacac	7	13	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	21240097	21240097	G	A	SNP	ZNF430	ENST00000261560	human	ensembl	69_37n	1	known	missense	c.983	p.R328Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620	10	0	0	80	55	40.74	-	-	-	A	21240097	G	A	21240097	3	1	679	1	0	0	0	0	1	0	0	0	18000	1116	39	1	1001	1	ZNF430	19	21240097	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	431893	21240097	37888886	791	59692										
ZNF492	0	genome.wustl.edu	37	chr19	22848028	22848028	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcttgtgacaacattgcaaaGatttccaaatataaaagaaa	6	6	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	22848028	22848028	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	silent	c.1557	p.K519	0.007	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	70	0	0	109	55	33.33	-	-	-	A	22848028	G	A	22848028	2	1	679	1	0	0	0	0	0	0	0	1	18039	933	33	2		2	ZNF492	19	22848028	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1607931	22848028	36280955	792	59693										
TSHZ3	0	genome.wustl.edu	37	chr19	31768267	31768267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggttgccggggctgtggacGtgggtgacagaagcactgaa	18	7	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	31768267	31768267	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.2432	p.T811M	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	137	0	0	62	40	39.22	-	-	-	A	31768267	G	A	31768267	3	1	679	1	0	0	0	0	1	0	0	0	16721	1145	40	1	817	1	TSHZ3	19	31768267	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	8920239	31768267	27360716	793	59694										
ANKRD27	0	genome.wustl.edu	37	chr19	33117720	33117720	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttggaaaccaggaggtcgatGagggatgcctgccctgcaga	15	9	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	33117720	33117720	G	C	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.1434	p.L478	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	55	0	0	22	24	52.17	-	-	-	C	33117720	G	C	33117720	2	2	679	1	0	0	0	0	0	0	0	1	655	1277	45	2		2	ANKRD27	19	33117720	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1349453	33117720	26011263	794	59695										
CD22	0	genome.wustl.edu	37	chr19	35826997	35826997	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	attcaagagtcccaggaagtCactctgacctgcttgctgaa	9	11	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	35826997	35826997	C	T	SNP	CD22	ENST00000085219	human	ensembl	69_37n	1	known	silent	c.471	p.V157	0.101	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CD22	HGNC	ENSG00000012124	72	0	0	23	9	28.12	-	-	-	T	35826997	C	T	35826997	2	4	679	1	0	0	0	0	0	0	0	1	3014	813	29	2		2	CD22	19	35826997	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2709277	35826997	23301986	795	59696										
MLL4	0	genome.wustl.edu	37	chr19	36211394	36211397	+	Frame_Shift_Del	DEL	AAGA	AAGA	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caaggagggagaagagaaggAagaaagagctgtagctgagg							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	36211394	36211397	AAGA	-	DEL	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_del	c.1145_1148	p.R384fs	0.894:0.905:0.903:0.785	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	9	0	0	7	5	41.67	-	-	-	-	36211397	AAGA	-	36211394	7	5	679	1	0	1	0	1	0	0	0	0	9694	246	9	0	1155	0	MLL4	19	36211394	Frame_Shift_Del	DEL	AAGA	TCGA-D8-A1JA-01A-11D-A13L-09	384397	36211394	22917589	796	59697										
ZNF565	0	genome.wustl.edu	37	chr19	36673394	36673394	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agtatgaattctgtagtgttCaatgagttgtgagccaagaa	11	4	2	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	36673394	36673394	C	T	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	missense	c.1474	p.E492K	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	40	0	0	73	24	24.74	-	-	-	T	36673394	C	T	36673394	3	4	679	1	0	0	0	0	1	0	0	0	18092	835	29	2	29	2	ZNF565	19	36673394	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	462000	36673394	22455589	797	59698										
RYR1	0	genome.wustl.edu	37	chr19	38996472	38996472	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gagatttaccgctggcccatCaaggagtccctgaaggccat	11	12	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	38996472	38996472	C	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.8427	p.I2809M	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	66	0	0	42	9	17.65	-	-	-	G	38996472	C	G	38996472	3	3	679	1	0	0	0	0	1	0	0	0	13854	816	29	2	8641	2	RYR1	19	38996472	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2323078	38996472	20132511	798	59699										
RYR1	0	genome.wustl.edu	37	chr19	39055673	39055673	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gctgagaagatggagctcttCgtgagtttctgcgaggacac	14	8	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	39055673	39055673	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.12699	p.F4233	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	16	0	0	7	8	53.33	-	-	-	T	39055673	C	T	39055673	2	4	679	1	0	0	0	0	0	0	0	1	13854	883	31	1		1	RYR1	19	39055673	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	59201	39055673	20073310	799	59700										
ITPKC	0	genome.wustl.edu	37	chr19	41223287	41223287	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcgggcctgcgccggggacaGagagtccgcaggcagaattc	16	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	41223287	41223287	G	A	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	missense	c.247	p.E83K	0.001	NULL	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	14	0	0	1	4	80	-	-	-	A	41223287	G	A	41223287	3	1	679	1	0	0	0	0	1	0	0	0	7973	943	33	2	249	2	ITPKC	19	41223287	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2167614	41223287	17905696	800	59701										
PSG6	0	genome.wustl.edu	37	chr19	43406569	43406569	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctattgtggcagccattaatGagactctgtctggtttccat	9	9	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	43406569	43406569	G	C	SNP	PSG6	ENST00000187910	human	ensembl	69_37n	-1	known	missense	c.1270	p.H424D	0.004	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	91	0	0	73	46	38.66	-	-	-	C	43406569	G	C	43406569	3	2	679	1	0	0	0	0	1	0	0	0	12739	1290	45	2	8	2	PSG6	19	43406569	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2183282	43406569	15722414	801	59702										
XRCC1	0	genome.wustl.edu	37	chr19	44047652	44047652	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gccagggaggggttgtccatCagggcctgcagggtggggtg	21	8	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	44047652	44047652	C	G	SNP	XRCC1	ENST00000262887	human	ensembl	69_37n	-1	known	silent	c.1794	p.L598	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	131	0	0	60	22	26.83	-	-	-	G	44047652	C	G	44047652	2	3	679	1	0	0	0	0	0	0	0	1	17549	813	29	2		2	XRCC1	19	44047652	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	641083	44047652	15081331	802	59703										
PVRL2	0	genome.wustl.edu	37	chr19	45377602	45377602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tccaggacctcaggcaccttCccgacctccgcagtggccca	9	19	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	45377602	45377602	C	A	SNP	PVRL2	ENST00000252483	human	ensembl	69_37n	1	known	missense	c.909	p.F303L	0.991	smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PVRL2	HGNC	ENSG00000130202	117	0	0	28	29	50.88	-	-	-	A	45377602	C	A	45377602	3	1	679	1	0	0	0	0	1	0	0	0	12923	854	30	2	927	2	PVRL2	19	45377602	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1329950	45377602	13751381	803	59704										
CA11	0	genome.wustl.edu	37	chr19	49142595	49142595	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atattgagggcccggtcaatGaggatccaggtgacagtctc	13	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	49142595	49142595	G	C	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	silent	c.762	p.L254	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	59	0	0	20	11	35.48	-	-	-	C	49142595	G	C	49142595	2	2	679	1	0	0	0	0	0	0	0	1	2537	1277	45	2		2	CA11	19	49142595	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3764993	49142595	9986388	804	59705										
CA11	0	genome.wustl.edu	37	chr19	49143464	49143464	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgtaaaggaggggacctccaGacacattgaccacaggtcgg	13	10	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	49143464	49143464	G	C	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	missense	c.359	p.S120C	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	59	0	0	15	5	25	-	-	-	C	49143464	G	C	49143464	3	2	679	1	0	0	0	0	1	0	0	0	2537	942	33	2	651	2	CA11	19	49143464	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	869	49143464	9985519	805	59706										
FLT3LG	0	genome.wustl.edu	37	chr19	49979435	49979435	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcaagattacccagtcaccGtggcctccaacctgcaggac	8	15	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	49979435	49979435	G	C	SNP	FLT3LG	ENST00000204637	human	ensembl	69_37n	1	known	missense	c.178	p.V60L	0.093	pfam_Flt3_lig,superfamily_4_helix_cytokine-like_core	pfam_Flt3_lig,superfamily_4_helix_cytokine-like_core	-	no_errors	FLT3LG	HGNC	ENSG00000090554	47	0	0	35	25	41.67	-	-	-	C	49979435	G	C	49979435	3	2	679	1	0	0	0	0	1	0	0	0	5989	1145	40	3	188	3	FLT3LG	19	49979435	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	835971	49979435	9149548	806	59707										
SHANK1	0	genome.wustl.edu	37	chr19	51191282	51191282	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatcatgttcaccacctgtcGgtggccgaccttcaccacat	8	15	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	51191282	51191282	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	nonsense	c.2206	p.R736*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	139	0	0	48	43	47.25	-	-	-	A	51191282	G	A	51191282	4	1	679	1	0	0	0	0	0	1	0	0	14353	1124	39	1	4307	1	SHANK1	19	51191282	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1211847	51191282	7937701	807	59708										
SHANK1	0	genome.wustl.edu	37	chr19	51219646	51219646	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggttggaacaggccatagttGagcacatcctgcaggctctc	12	11	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	51219646	51219646	G	C	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.345	p.L115	0.968	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	50	0	0	25	15	37.5	-	-	-	C	51219646	G	C	51219646	2	2	679	1	0	0	0	0	0	0	0	1	14353	1277	45	2		2	SHANK1	19	51219646	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	28364	51219646	7909337	808	59709										
ZNF83	0	genome.wustl.edu	37	chr19	53117613	53117613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aaaattacattcatatgtatGagaaatgtgggttttgacag	9	3	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	53117613	53117613	G	C	SNP	ZNF83	ENST00000301096	human	ensembl	69_37n	-1	known	missense	c.205	p.H69D	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766	81	0	0	58	30	34.09	-	-	-	C	53117613	G	C	53117613	3	2	679	1	0	0	0	0	1	0	0	0	18276	1290	45	2	1349	2	ZNF83	19	53117613	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1897967	53117613	6011370	809	59710										
ZNF468	0	genome.wustl.edu	37	chr19	53352452	53352452	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aattctatggccacgtccctGaatgtcaatagaccctgaaa	7	11	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	53352452	53352452	G	A	SNP	ZNF468	ENST00000243639	human	ensembl	69_37n	-1	known	silent	c.30	p.F10	0.966	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604	137	0	0	197	123	38.44	-	-	-	A	53352452	G	A	53352452	2	1	679	1	0	0	0	0	0	0	0	1	18024	1281	45	2		2	ZNF468	19	53352452	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	234839	53352452	5776531	810	59711										
ZNF845	0	genome.wustl.edu	37	chr19	53855843	53855843	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agaaaccttacaaatgtgaaGaatgtgatgaagctttcagt	9	5	1	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	53855843	53855843	G	C	SNP	ZNF845	ENST00000458035	human	ensembl	69_37n	1	known	missense	c.1915	p.E639Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799	25	0	0	120	57	32.2	-	-	-	C	53855843	G	C	53855843	3	2	679	1	0	0	0	0	1	0	0	0	18284	943	33	2	1925	2	ZNF845	19	53855843	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	503391	53855843	5273140	811	59712										
GP6	0	genome.wustl.edu	37	chr19	55525836	55525836	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	accgcagtgggagatggagtGagggtgagagtttctgggga	20	4	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	55525836	55525836	G	C	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	missense	c.1477	p.H493D	0.029	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	120	0	0	34	21	38.18	-	-	-	C	55525836	G	C	55525836	3	2	679	1	0	0	0	0	1	0	0	0	6634	1290	45	2	389	2	GP6	19	55525836	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1669993	55525836	3603147	812	59713										
PPP1R12C	0	genome.wustl.edu	37	chr19	55623917	55623917	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcaggtccccgtcactgttGacggcggcgatgttggcccc	15	14	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	55623917	55623917	G	C	SNP	PPP1R12C	ENST00000592993	human	ensembl	69_37n	-1	novel	nonsense	c.359	p.S120*	0.998	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP1R12C	HGNC	ENSG00000125503	10	0	0	7	5	41.67	-	-	-	C	55623917	G	C	55623917	4	2	679	1	0	0	0	0	0	1	0	0	12433	1277	45	2	1939	2	PPP1R12C	19	55623917	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	98081	55623917	3505066	813	59714										
TNNI3	0	genome.wustl.edu	37	chr19	55663210	55663210	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aggcaggaaggctcagctctCaaactttttcttgcggccct	10	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	55663210	55663210	C	T	SNP	TNNI3	ENST00000344887	human	ensembl	69_37n	-1	known	missense	c.625	p.E209K	1.000	NULL	pfam_Troponin,pfam_Troponin-I_N	-	no_errors	TNNI3	HGNC	ENSG00000129991	215	0	0	116	74	38.95	-	-	-	T	55663210	C	T	55663210	3	4	679	1	0	0	0	0	1	0	0	0	16423	835	29	2	11	2	TNNI3	19	55663210	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	39293	55663210	3465773	814	59715										
PEG3	0	genome.wustl.edu	37	chr19	57335705	57335705	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gttctccggcttttttgctcGcacccaaggcttgagctttt	9	12	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	57335705	57335705	G	A	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	nonsense	c.319	p.R107*	0.792	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	57	0	0	28	25	47.17	-	-	-	A	57335705	G	A	57335705	4	1	679	1	0	0	0	0	0	1	0	0	11793	1095	38	1		1	PEG3	19	57335705	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1672495	57335705	1793278	815	59716										
ZNF17	0	genome.wustl.edu	37	chr19	57932368	57932368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	accttttgaatgcagcatttGtgggaaatcctttagatgtc	9	7	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	57932368	57932368	G	C	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.1508	p.C503S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	71	0	0	123	66	34.74	-	-	-	C	57932368	G	C	57932368	3	2	679	1	0	0	0	0	1	0	0	0	17839	1377	48	4	1518	4	ZNF17	19	57932368	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	596663	57932368	1196615	816	59717										
ZNF586	0	genome.wustl.edu	37	chr19	58290506	58290506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttatgagtgtattgaatgtgGgaaagcctttgctgaaaagt	12	3	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	58290506	58290506	G	C	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	missense	c.551	p.G184A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	55	0	0	109	70	38.46	-	-	-	C	58290506	G	C	58290506	3	2	679	1	0	0	0	0	1	0	0	0	18115	1232	43	4	561	4	ZNF586	19	58290506	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	358138	58290506	838477	817	59718										
ZNF274	0	genome.wustl.edu	37	chr19	58724197	58724197	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttgttcagagctcttccctCacacagcatcagagagttca	7	12	5	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	58724197	58724197	C	G	SNP	ZNF274	ENST00000326804	human	ensembl	69_37n	1	known	silent	c.1647	p.L549	0.027	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606	50	0	0	70	48	40.68	-	-	-	G	58724197	C	G	58724197	2	3	679	1	0	0	0	0	0	0	0	1	17905	813	29	2		2	ZNF274	19	58724197	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	433691	58724197	404786	818	59719										
ZNF324B	0	genome.wustl.edu	37	chr19	58966888	58966888	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggaggcagcccaggacgcctGagcggcagaagccatgtgca	16	12	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	19	58966888	58966888	G	C	SNP	ZNF324B	ENST00000336614	human	ensembl	69_37n	1	known	missense	c.577	p.E193Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324B	HGNC	ENSG00000249471	22	0	0	13	6	31.58	-	-	-	C	58966888	G	C	58966888	3	2	679	1	0	0	0	0	1	0	0	0	17941	1291	45	2	587	2	ZNF324B	19	58966888	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	242691	58966888	162095	819	59720										
DEFB125	0	genome.wustl.edu	37	chr20	76674	76674	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaaccccaaaaatgttggaaGaataatgtaggacattgcag	10	6	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	76674	76674	G	C	SNP	DEFB125	ENST00000382410	human	ensembl	69_37n	1	known	missense	c.87	p.K29N	0.948	NULL	NULL	-	no_errors	DEFB125	HGNC	ENSG00000178591	27	0	0	37	22	37.29	-	-	-	C	76674	G	C	76674	3	2	679	1	0	0	0	0	1	0	0	0	4446	933	33	2	93	2	DEFB125	20	76674	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		76674	62948846	820	59721										
DEFB125	0	genome.wustl.edu	37	chr20	76792	76792	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atgaatatactcgacgaccaGcatttcctgtgattcaccta	6	11	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	76792	76792	G	C	SNP	DEFB125	ENST00000382410	human	ensembl	69_37n	1	known	missense	c.205	p.A69P	0.000	NULL	NULL	-	no_errors	DEFB125	HGNC	ENSG00000178591	57	0	0	60	36	37.5	-	-	-	C	76792	G	C	76792	3	2	679	1	0	0	0	0	1	0	0	0	4446	971	34	4	211	4	DEFB125	20	76792	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	118	76792	62948728	821	59722										
ANGPT4	0	genome.wustl.edu	37	chr20	870985	870985	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acctgctccagcttcgacctCaagatcgtcttgatggccct	8	15	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	870985	870985	C	G	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.336	p.L112F	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	174	0	0	20	10	33.33	-	-	-	G	870985	C	G	870985	3	3	679	1	0	0	0	0	1	0	0	0	612	825	29	2	1207	2	ANGPT4	20	870985	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	794193	870985	62154535	822	59723										
SLC24A3	0	genome.wustl.edu	37	chr20	19665825	19665825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcccaattaagcacaccgtgGagaatgggacagggcccagc	12	12	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	19665825	19665825	G	A	SNP	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	missense	c.1144	p.E382K	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	89	0	0	56	36	39.13	-	-	-	A	19665825	G	A	19665825	3	1	679	1	0	0	0	0	1	0	0	0	14556	1175	41	2	1190	2	SLC24A3	20	19665825	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	18794840	19665825	43359695	823	59724										
RALGAPA2	0	genome.wustl.edu	37	chr20	20585864	20585864	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgttcacttaatttatccaGaggtaggtttgtcatctcaa	7	7	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	20585864	20585864	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	silent	c.1993	p.L665	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	135	0	0	52	30	36.59	-	-	-	A	20585864	G	A	20585864	2	1	679	1	0	0	0	0	0	0	0	1	13097	933	33	2		2	RALGAPA2	20	20585864	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	920039	20585864	42439656	824	59725										
MYH7B	0	genome.wustl.edu	37	chr20	33584937	33584937	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cgggtggaagacgagcagctCttgggggcccagatgcagaa	17	9	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	33584937	33584937	C	G	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	silent	c.3444	p.L1148	0.919	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	12	0	0	6	4	40	-	-	-	G	33584937	C	G	33584937	2	3	679	1	0	0	0	0	0	0	0	1	10112	900	32	2		2	MYH7B	20	33584937	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12999073	33584937	29440583	825	59726										
TGM2	0	genome.wustl.edu	37	chr20	36776480	36776480	+	Frame_Shift_Del	DEL	C	C	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	atcaggcagatgtctaggatCccatcttcaaactgtgtcag							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	36776480	36776480	C	-	DEL	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	frame_shift_del	c.564	p.I189fs	0.067	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959	38	0	0	8	9	52.94	-	-	-	-	36776480	C	-	36776480	7	5	679	1	0	1	0	1	0	0	0	0	15925	842	30	0	1567	0	TGM2	20	36776480	Frame_Shift_Del	DEL	C	TCGA-D8-A1JA-01A-11D-A13L-09	3191543	36776480	26249040	826	59727										
PTPRT	0	genome.wustl.edu	37	chr20	41420063	41420063	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcaggagaaggtgggccttCtggccagaggctctcccaga	16	11	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	41420063	41420063	C	G	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.258	p.Q86H	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	44	0	0	25	19	43.18	-	-	-	G	41420063	C	G	41420063	3	3	679	1	0	0	0	0	1	0	0	0	12895	912	32	2	4244	2	PTPRT	20	41420063	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4643583	41420063	21605457	827	59728										
PLTP	0	genome.wustl.edu	37	chr20	44531210	44531210	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggggccaggacccgcagctCcagcttcaatggggagtcaa	14	12	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	44531210	44531210	C	G	SNP	PLTP	ENST00000542937	human	ensembl	69_37n	-1	known	missense	c.1036	p.E346Q	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	39	0	0	3	6	60	-	-	-	G	44531210	C	G	44531210	3	3	679	1	0	0	0	0	1	0	0	0	12188	864	30	2	529	2	PLTP	20	44531210	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	3111147	44531210	18494310	828	59729										
PLTP	0	genome.wustl.edu	37	chr20	44533472	44533472	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcccaaagtaggtggccctCagcagcatgtccaggtcgtg	12	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	44533472	44533472	C	T	SNP	PLTP	ENST00000542937	human	ensembl	69_37n	-1	known	silent	c.969	p.L323	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	105	0	0	4	28	84.85	-	-	-	T	44533472	C	T	44533472	2	4	679	1	0	0	0	0	0	0	0	1	12188	813	29	2		2	PLTP	20	44533472	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2262	44533472	18492048	829	59730										
PLTP	0	genome.wustl.edu	37	chr20	44533593	44533593	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgacataccttgtcccccacCagcaacagctgcagggcccc	8	18	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	44533593	44533593	C	T	SNP	PLTP	ENST00000542937	human	ensembl	69_37n	-1	known	silent	c.930	p.L310	0.977	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979	91	0	0	6	37	86.05	-	-	-	T	44533593	C	T	44533593	2	4	679	1	0	0	0	0	0	0	0	1	12188	581	21	4		4	PLTP	20	44533593	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	121	44533593	18491927	830	59731										
CD40	0	genome.wustl.edu	37	chr20	44751308	44751308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagacaccatctgcacctgtGaagaaggctggcactgtacg	11	12	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	20	44751308	44751308	G	A	SNP	CD40	ENST00000372285	human	ensembl	69_37n	1	known	missense	c.316	p.E106K	0.000	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_5,prints_Fas_rcpt	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_5,prints_Fas_rcpt	-	no_errors	CD40	HGNC	ENSG00000101017	231	0	0	51	25	32.47	-	-	-	A	44751308	G	A	44751308	3	1	679	1	0	0	0	0	1	0	0	0	3044	1291	45	2	330	2	CD40	20	44751308	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	217715	44751308	18274212	831	59732										
SAMSN1	0	genome.wustl.edu	37	chr21	15858421	15858421	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	taggggctcaggttcattttCttgctcttgaataactgtaa	9	7	4	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	15858421	15858421	C	T	SNP	SAMSN1	ENST00000400566	human	ensembl	69_37n	-1	known	missense	c.934	p.E312K	1.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	93	0	0	12	30	71.43	-	-	-	T	15858421	C	T	15858421	3	4	679	1	0	0	0	0	1	0	0	0	13916	922	32	2	191	2	SAMSN1	21	15858421	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		15858421	32271474	832	59733										
KRTAP21-1	0	genome.wustl.edu	37	chr21	32127476	32127476	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttagcaggaagaatagcatCttctaaagcaaaatggccgg	10	7	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	32127476	32127476	C	G	SNP	KRTAP21-1	ENST00000335093	human	ensembl	69_37n	-1	known	missense	c.221	p.R74T	0.964	NULL	NULL	-	no_errors	KRTAP21-1	HGNC	ENSG00000187005	168	0	0	21	106	83.46	-	-	-	G	32127476	C	G	32127476	3	3	679	1	0	0	0	0	1	0	0	0	8591	913	32	2	20	2	KRTAP21-1	21	32127476	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	16269055	32127476	16002419	833	59734										
KRTAP8-1	0	genome.wustl.edu	37	chr21	32185355	32185355	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatttcagccaatcagtagaGagcaaatggcgagtatctcc	10	9	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	32185355	32185355	G	C	SNP	KRTAP8-1	ENST00000329621	human	ensembl	69_37n	-1	known	missense	c.184	p.L62V	0.616	NULL	pfam_KRTAP	-	no_errors	KRTAP8-1	HGNC	ENSG00000183640	76	0	0	3	42	93.33	-	-	-	C	32185355	G	C	32185355	3	2	679	1	0	0	0	0	1	0	0	0	8626	942	33	2	11	2	KRTAP8-1	21	32185355	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	57879	32185355	15944540	834	59735										
NDUFV3	0	genome.wustl.edu	37	chr21	44329106	44329106	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	caggatgcctcagccctcctCaggccgggagtcacctcgac	11	17	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	44329106	44329106	C	G	SNP	NDUFV3	ENST00000354250	human	ensembl	69_37n	1	known	nonsense	c.1397	p.S466*	0.996	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194	50	0	0	25	86	77.48	-	-	-	G	44329106	C	G	44329106	4	3	679	1	0	0	0	0	0	1	0	0	10373	838	29	2	1411	2	NDUFV3	21	44329106	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	12143751	44329106	3800789	835	59736										
PKNOX1	0	genome.wustl.edu	37	chr21	44450137	44450137	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acgagtctgtggacagcacaGaggaggatgcgggtgccctg	17	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	44450137	44450137	G	C	SNP	PKNOX1	ENST00000291547	human	ensembl	69_37n	1	known	missense	c.1237	p.E413Q	0.996	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX1	HGNC	ENSG00000160199	24	0	0	11	5	31.25	-	-	-	C	44450137	G	C	44450137	3	2	679	1	0	0	0	0	1	0	0	0	12056	943	33	2	1275	2	PKNOX1	21	44450137	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	121031	44450137	3679758	836	59737										
TRPM2	0	genome.wustl.edu	37	chr21	45821618	45821618	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcccgcgcccgtgccttcttCaccgcacccgtggtggtctt	11	18	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	45821618	45821618	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.2376	p.F792	0.988	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	14	0	0	36	42	53.85	-	-	-	T	45821618	C	T	45821618	2	4	679	1	0	0	0	0	0	0	0	1	16682	825	29	2		2	TRPM2	21	45821618	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1371481	45821618	2308277	837	59738										
COL6A2	0	genome.wustl.edu	37	chr21	47546424	47546424	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcctctcttccagaccctcaGatcgtgtgcccagaccttcc	6	18	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	21	47546424	47546424	G	C	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	missense	c.2430	p.Q810H	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	16	0	0	5	21	80.77	-	-	-	C	47546424	G	C	47546424	3	2	679	1	0	0	0	0	1	0	0	0	3730	933	33	2	2532	2	COL6A2	21	47546424	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1724806	47546424	583471	838	59739										
PI4KA	0	genome.wustl.edu	37	chr22	21161665	21161665	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcacccttcatgtagtacaGagtgtcacgcagcatcttga	8	12	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	21161665	21161665	G	C	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.1153	p.L385V	0.944	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	107	0	0	49	35	41.67	-	-	-	C	21161665	G	C	21161665	3	2	679	1	0	0	0	0	1	0	0	0	11947	933	33	2	5339	2	PI4KA	22	21161665	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09		21161665	30142901	839	59740										
GNAZ	0	genome.wustl.edu	37	chr22	23465379	23465379	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	acaagaaggacctgctggcaGagaagatccgccgcatcccg	12	13	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	23465379	23465379	G	C	SNP	GNAZ	ENST00000248996	human	ensembl	69_37n	1	known	missense	c.829	p.E277Q	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	39	0	0	52	38	42.22	-	-	-	C	23465379	G	C	23465379	3	2	679	1	0	0	0	0	1	0	0	0	6566	943	33	2	835	2	GNAZ	22	23465379	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2303714	23465379	27839187	840	59741										
RTDR1	0	genome.wustl.edu	37	chr22	23482532	23482532	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cttcagcttgggcagggcccGatggccataggcagtggtaa	15	10	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	23482532	23482532	G	C	SNP	RTDR1	ENST00000216036	human	ensembl	69_37n	-1	known	missense	c.76	p.R26G	0.306	NULL	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218	150	0	0	61	42	40.78	-	-	-	C	23482532	G	C	23482532	3	2	679	1	0	0	0	0	1	0	0	0	13805	1057	37	3	994	3	RTDR1	22	23482532	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	17153	23482532	27822034	841	59742										
MYO18B	0	genome.wustl.edu	37	chr22	26422843	26422843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggcagtgacgagggaaacctCtcgctgagggttggggcaaa	17	8	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	26422843	26422843	C	G	SNP	MYO18B	ENST00000543971	human	ensembl	69_37n	1	novel	missense	c.752	p.S251C	0.663	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYO18B	HGNC	ENSG00000133454	16	0	0	7	6	46.15	-	-	-	G	26422843	C	G	26422843	3	3	679	1	0	0	0	0	1	0	0	0	10138	900	32	2	7069	2	MYO18B	22	26422843	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2940311	26422843	24881723	842	59743										
ZNRF3	0	genome.wustl.edu	37	chr22	29442769	29442769	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	accagaaagttcaactccaaGagcaaggggcgccgggaggg	15	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	29442769	29442769	G	C	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	missense	c.810	p.K270N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	24	0	0	18	10	35.71	-	-	-	C	29442769	G	C	29442769	3	2	679	1	0	0	0	0	1	0	0	0	18306	933	33	2	528	2	ZNRF3	22	29442769	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3019926	29442769	21861797	843	59744										
ZNRF3	0	genome.wustl.edu	37	chr22	29445639	29445639	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gggcagtccccacctagcctCgcaccccggggcccggcccg	13	21	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	29445639	29445639	C	G	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	silent	c.1470	p.L490	0.002	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	11	0	0	8	5	38.46	-	-	-	G	29445639	C	G	29445639	2	3	679	1	0	0	0	0	0	0	0	1	18306	871	31	3		3	ZNRF3	22	29445639	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	2870	29445639	21858927	844	59745										
DEPDC5	0	genome.wustl.edu	37	chr22	32275716	32275716	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	agccgaagttttggaggacgGagccaggcggcagcactttt	15	9	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	32275716	32275716	G	C	SNP	DEPDC5	ENST00000382105	human	ensembl	69_37n	1	known	missense	c.3668	p.G1223A	1.000	NULL	pfam_DUF3608	-	no_errors	DEPDC5	HGNC	ENSG00000100150	76	0	0	22	10	31.25	-	-	-	C	32275716	G	C	32275716	3	2	679	1	0	0	0	0	1	0	0	0	4478	1161	41	2	4148	2	DEPDC5	22	32275716	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2830077	32275716	19028850	845	59746										
MYH9	0	genome.wustl.edu	37	chr22	36697607	36697607	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgcagcgtctccatctccgtGagcctgttctccgcagccag	10	16	3	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	36697607	36697607	G	C	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	silent	c.2604	p.L868	0.399	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	59	0	0	47	35	42.68	-	-	-	C	36697607	G	C	36697607	2	2	679	1	0	0	0	0	0	0	0	1	10114	1277	45	2		2	MYH9	22	36697607	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4421891	36697607	14606959	846	59747										
ENTHD1	0	genome.wustl.edu	37	chr22	40161418	40161418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatacccttaagtcggggctGataaactcctctttacttga	8	10	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	40161418	40161418	G	C	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	missense	c.1029	p.I343M	0.011	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	88	0	0	54	27	33.33	-	-	-	C	40161418	G	C	40161418	3	2	679	1	0	0	0	0	1	0	0	0	5174	1280	45	2	802	2	ENTHD1	22	40161418	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3463811	40161418	11143148	847	59748										
L3MBTL2	0	genome.wustl.edu	37	chr22	41613161	41613161	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttcgactgggggaagttcctGaaggatcacagttacaaggc	13	8	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	41613161	41613161	G	A	SNP	L3MBTL2	ENST00000449635	human	ensembl	69_37n	1	known	missense	c.397	p.E133K	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt	-	no_start_codon:pseudogene:no_stop_codon	L3MBTL2	HGNC	ENSG00000100395	47	0	0	31	21	40.38	-	-	-	A	41613161	G	A	41613161	3	1	679	1	0	0	0	0	1	0	0	0	8646	1277	45	2	573	2	L3MBTL2	22	41613161	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1451743	41613161	9691405	848	59749										
TCF20	0	genome.wustl.edu	37	chr22	42609196	42609196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actatctttgtaactatagcGcagacttccaggagatttgc	8	9	1	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	42609196	42609196	G	A	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.2116	p.R706C	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	116	0	0	58	25	30.12	-	-	-	A	42609196	G	A	42609196	3	1	679	1	0	0	0	0	1	0	0	0	15785	1087	38	1	3804	1	TCF20	22	42609196	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	996035	42609196	8695370	849	59750										
SELO	0	genome.wustl.edu	37	chr22	50649205	50649205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tggagctgggggaggccatcCtggccgaggagtttgacgcc	18	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	22	50649205	50649205	C	T	SNP	SELO	ENST00000380903	human	ensembl	69_37n	1	known	silent	c.1216	p.L406	0.615	pfam_UPF0061	pfam_UPF0061	-	pseudogene	RP3-402G11.5	Clone_based_vega_gene	ENSG00000073169	14	0	0	2	9	81.82	-	-	-	T	50649205	C	T	50649205	2	4	679	1	0	0	0	0	0	0	0	1	14106	680	24	4		4	SELO	22	50649205	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	8040009	50649205	655361	850	59751										
ARSE	0	genome.wustl.edu	37	chrX	2861117	2861117	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagtcttacctttataaattCcattccagccaccatactgg	4	13	1	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	2861117	2861117	C	G	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	missense	c.1190	p.G397A	0.990	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	82	0	0	46	46	50	-	-	-	G	2861117	C	G	2861117	3	3	679	1	0	0	0	0	1	0	0	0	994	855	30	2	670	2	ARSE	23	2861117	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09		2861117	152409443	851	59752										
MXRA5	0	genome.wustl.edu	37	chrX	3236006	3236006	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtaccgttcttgagaacctCaaaccgttgtatcctggtat	9	10	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	3236006	3236006	C	G	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5716	p.E1906Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	14	0	0	4	4	50	-	-	-	G	3236006	C	G	3236006	3	3	679	1	0	0	0	0	1	0	0	0	10075	835	29	2	2778	2	MXRA5	23	3236006	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	374889	3236006	152034554	852	59753										
SH3KBP1	0	genome.wustl.edu	37	chrX	19701973	19701973	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	cagaaagtcattttctacttCaattgaccttggtcttagtt	6	8	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	19701973	19701973	C	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.694	p.E232K	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	229	0	0	113	73	39.25	-	-	-	T	19701973	C	T	19701973	3	4	679	1	0	0	0	0	1	0	0	0	14344	835	29	2	1371	2	SH3KBP1	23	19701973	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	16465967	19701973	135568587	853	59754										
DMD	0	genome.wustl.edu	37	chrX	31241177	31241177	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tacttacagcaaagggccttCtgcagtcttcggagtttcat	9	10	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	31241177	31241177	C	T	SNP	DMD	ENST00000465285	human	ensembl	69_37n	-1	novel	missense	c.2533	p.E845K	1.000	pfam_EF-hand_dom_typ1	pfam_EF-hand_dom_typ1,pfam_Spectrin_repeat,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMD	HGNC	ENSG00000198947	48	0	0	37	19	33.93	-	-	-	T	31241177	C	T	31241177	3	4	679	1	0	0	0	0	1	0	0	0	4616	912	32	2	1863	2	DMD	23	31241177	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	11539204	31241177	124029383	854	59755										
DMD	0	genome.wustl.edu	37	chrX	32662403	32662403	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aatattaccaacccggccctGatgggctgtcaaatccatca	7	13	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	32662403	32662403	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	nonsense	c.1177	p.Q393*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	72	0	0	140	21	13.04	-	-	-	A	32662403	G	A	32662403	4	1	679	1	0	0	0	0	0	1	0	0	4616	1299	45	2	10399	2	DMD	23	32662403	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1421226	32662403	122608157	855	59756										
PRRG1	0	genome.wustl.edu	37	chrX	37312566	37312566	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcgtagacagacagtgactGaaggccacattcctttccct	8	13	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	37312566	37312566	G	A	SNP	PRRG1	ENST00000378628	human	ensembl	69_37n	1	known	missense	c.349	p.E117K	0.841	NULL	pfam_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962	100	0	0	129	85	39.72	-	-	-	A	37312566	G	A	37312566	3	1	679	1	0	0	0	0	1	0	0	0	12685	1291	45	2	441	2	PRRG1	23	37312566	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4650163	37312566	117957994	856	59757										
PRRG1	0	genome.wustl.edu	37	chrX	37312734	37312734	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtgatcccccgccaacctatGaggaagccactggccaagtg	11	14	0	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	37312734	37312734	G	C	SNP	PRRG1	ENST00000378628	human	ensembl	69_37n	1	known	missense	c.517	p.E173Q	1.000	NULL	pfam_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962	61	0	0	57	34	37.36	-	-	-	C	37312734	G	C	37312734	3	2	679	1	0	0	0	0	1	0	0	0	12685	1291	45	2	609	2	PRRG1	23	37312734	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	168	37312734	117957826	857	59758										
DDX3X	0	genome.wustl.edu	37	chrX	41196696	41196696	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgaactcttcagataatcaGagtggaggaagtacagccag	11	8	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	41196696	41196696	G	C	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.81	p.Q27H	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	71	0	0	84	58	40.56	-	-	-	C	41196696	G	C	41196696	3	2	679	1	0	0	0	0	1	0	0	0	4389	933	33	2	87	2	DDX3X	23	41196696	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3883962	41196696	114073864	858	59759										
PHF16	0	genome.wustl.edu	37	chrX	46884154	46884154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgagaaggtaaaggacgttCtgtttatccgaccccggaag	12	9	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	46884154	46884154	C	G	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	missense	c.313	p.L105V	0.250	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	68	0	0	50	19	27.54	-	-	-	G	46884154	C	G	46884154	3	3	679	1	0	0	0	0	1	0	0	0	11901	912	32	2	327	2	PHF16	23	46884154	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	5687458	46884154	108386406	859	59760										
SLC38A5	0	genome.wustl.edu	37	chrX	48317388	48317388	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	aagcctagactgacggccatGaagaggactcccaggactcc	11	13	0	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	48317388	48317388	G	T	SNP	SLC38A5	ENST00000317669	human	ensembl	69_37n	-1	known	missense	c.1350	p.F450L	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483	79	0	0	14	8	36.36	-	-	-	T	48317388	G	T	48317388	3	4	679	1	0	0	0	0	1	0	0	0	14696	1281	45	2	72	2	SLC38A5	23	48317388	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1433234	48317388	106953172	860	59761										
PPP1R3F	0	genome.wustl.edu	37	chrX	49143510	49143510	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgaacagcggtgtgtccctCctggtgcttgcgctgtgcct	13	13	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	49143510	49143510	C	T	SNP	PPP1R3F	ENST00000055335	human	ensembl	69_37n	1	known	silent	c.2358	p.L786	0.993	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769	74	0	0	24	13	35.14	-	-	-	T	49143510	C	T	49143510	2	4	679	1	0	0	0	0	0	0	0	1	12452	842	30	2		2	PPP1R3F	23	49143510	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	826122	49143510	106127050	861	59762										
MAGED1	0	genome.wustl.edu	37	chrX	51638769	51638769	+	Frame_Shift_Del	DEL	C	C	-													0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ccaggtatctctgaacctgaCggtgcaactgcacagacatc							TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	51638769	51638769	C	-	DEL	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	frame_shift_del	c.834	p.D278fs	0.996	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	25	0	0	10	9	45	-	-	-	-	51638769	C	-	51638769	7	5	679	1	0	1	0	1	0	0	0	0	9254	535	19	0	844	0	MAGED1	23	51638769	Frame_Shift_Del	DEL	C	TCGA-D8-A1JA-01A-11D-A13L-09	2495259	51638769	103631791	862	59763										
HUWE1	0	genome.wustl.edu	37	chrX	53575140	53575140	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgccactgctggaggactgtGaggagcatgggctacaggcc	16	10	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	53575140	53575140	G	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	nonsense	c.10130	p.S3377*	0.996	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	124	0	0	36	20	35.71	-	-	-	C	53575140	G	C	53575140	4	2	679	1	0	0	0	0	0	1	0	0	7515	1294	45	2	3062	2	HUWE1	23	53575140	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1936371	53575140	101695420	863	59764										
WNK3	0	genome.wustl.edu	37	chrX	54265471	54265471	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcagatgaatggctccaccgCttgacacagcagcaggatag	12	11	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	54265471	54265471	C	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.3713	p.S1238I	0.973	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	44	0	0	34	28	45.16	-	-	-	A	54265471	C	A	54265471	3	1	679	1	0	0	0	0	1	0	0	0	17476	797	28	4	1717	4	WNK3	23	54265471	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	690331	54265471	101005089	864	59765										
ARHGEF9	0	genome.wustl.edu	37	chrX	62974390	62974390	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gcgttcccaggaaaaacatgAgtatgacattgacaagcagg	11	8	0	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	62974390	62974390	A	G	SNP	ARHGEF9	ENST00000495564	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	12	0	0	15	6	28.57	-	-	-	G	62974390	A	G	62974390	1	3	679	0	1	0	0	0	0	0	0	0	914	319	11	5		5	ARHGEF9	23	62974390	RNA	SNP	A	TCGA-D8-A1JA-01A-11D-A13L-09	8708919	62974390	92296170	865	59766										
EDA2R	0	genome.wustl.edu	37	chrX	65824937	65824937	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttagaggtagctgtgcagttGaccttctgaacacgattgat	11	7	1	4			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	65824937	65824937	G	C	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	silent	c.219	p.V73	0.991	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	113	0	0	44	16	26.67	-	-	-	C	65824937	G	C	65824937	2	2	679	1	0	0	0	0	0	0	0	1	4939	1277	45	2		2	EDA2R	23	65824937	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	2850547	65824937	89445623	866	59767										
OGT	0	genome.wustl.edu	37	chrX	70787538	70787538	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gtctgcttggacactccactCtgtaatgggcacaccacagg	10	13	2	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	70787538	70787538	C	G	SNP	OGT	ENST00000373719	human	ensembl	69_37n	1	known	silent	c.2778	p.L926	0.351	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	57	0	0	40	21	34.43	-	-	-	G	70787538	C	G	70787538	2	3	679	1	0	0	0	0	0	0	0	1	10920	900	32	2		2	OGT	23	70787538	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	4962601	70787538	84483022	867	59768										
NAP1L2	0	genome.wustl.edu	37	chrX	72433719	72433719	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ataatcataataatagtcctCataaccatcgtcctcatcca	2	12	3	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	72433719	72433719	C	T	SNP	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	missense	c.610	p.E204K	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	116	0	0	111	47	29.75	-	-	-	T	72433719	C	T	72433719	3	4	679	1	0	0	0	0	1	0	0	0	10229	835	29	2	776	2	NAP1L2	23	72433719	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	1646181	72433719	82836841	868	59769										
KIAA2022	0	genome.wustl.edu	37	chrX	73963609	73963609	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctttcactaataaaagtctcGaagtaaccccaatcctgatt	4	11	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	73963609	73963609	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.783	p.F261	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	129	0	0	69	49	41.53	-	-	-	A	73963609	G	A	73963609	2	1	679	1	0	0	0	0	0	0	0	1	8321	1049	37	1		1	KIAA2022	23	73963609	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1529890	73963609	81306951	869	59770										
ATRX	0	genome.wustl.edu	37	chrX	76972617	76972617	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcaatttacctgtgttttGattcattgcaagtcgtggag	9	6	2	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	76972617	76972617	G	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.124	p.Q42E	0.994	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	174	0	0	81	59	42.14	-	-	-	C	76972617	G	C	76972617	3	2	679	1	0	0	0	0	1	0	0	0	1212	1299	45	2	7490	2	ATRX	23	76972617	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3009008	76972617	78297943	870	59771										
MAGT1	0	genome.wustl.edu	37	chrX	77084726	77084726	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctgggacctttttaactcatCagaaagctgaaacaaaaata	6	8	2	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	77084726	77084726	C	T	SNP	MAGT1	ENST00000358075	human	ensembl	69_37n	-1	known	silent	c.1095	p.L365	1.000	NULL	pfam_OligosaccharylTrfase_OST3/OST6,superfamily_Thioredoxin-like_fold	-	no_errors	MAGT1	HGNC	ENSG00000102158	76	0	0	120	75	38.46	-	-	-	T	77084726	C	T	77084726	2	4	679	1	0	0	0	0	0	0	0	1	9267	813	29	2		2	MAGT1	23	77084726	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	112109	77084726	78185834	871	59772										
HDX	0	genome.wustl.edu	37	chrX	83724168	83724168	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctttgcgtgattgaatactGagtttccagcatttagcaca	8	8	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	83724168	83724168	G	C	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	nonsense	c.563	p.S188*	0.997	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	188	0	0	107	60	35.93	-	-	-	C	83724168	G	C	83724168	4	2	679	1	0	0	0	0	0	1	0	0	7077	1294	45	2	1541	2	HDX	23	83724168	Nonsense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6639442	83724168	71546392	872	59773										
BTK	0	genome.wustl.edu	37	chrX	100609675	100609675	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gatcgtttaccaaacagtttCgagctgcctgtagtgcaaac	9	10	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	100609675	100609675	C	G	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.1574	p.R525P	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	48	0	0	50	38	43.18	-	-	-	G	100609675	C	G	100609675	3	3	679	1	0	0	0	0	1	0	0	0	1566	884	31	3	421	3	BTK	23	100609675	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	16885507	100609675	54660885	873	59774										
LRCH2	0	genome.wustl.edu	37	chrX	114400482	114400482	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tctatttgattctgagacttGagaatgaaggctgactgtgt	11	5	2	5			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	114400482	114400482	G	C	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.1120	p.Q374E	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	143	1	0.69	100	35	25.93	-	-	-	C	114400482	G	C	114400482	3	2	679	1	0	0	0	0	1	0	0	0	8999	1299	45	2	1233	2	LRCH2	23	114400482	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	13790807	114400482	40870078	874	59775										
LRCH2	0	genome.wustl.edu	37	chrX	114422891	114422891	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttcaaggggtgcaaataacCagacatcagaaggaatttct	9	7	3	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	114422891	114422891	C	T	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	nonsense	c.392	p.W131*	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	32	0	0	53	23	30.26	-	-	-	T	114422891	C	T	114422891	4	4	679	1	0	0	0	0	0	1	0	0	8999	595	21	4	1985	4	LRCH2	23	114422891	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	22409	114422891	40847669	875	59776										
WDR44	0	genome.wustl.edu	37	chrX	117570786	117570786	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgccatagcttttcatccaaGagtaagtaactatttataca	5	8	1	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	117570786	117570786	G	C	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1973	p.R658T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	85	0	0	69	49	41.53	-	-	-	C	117570786	G	C	117570786	3	2	679	1	0	0	0	0	1	0	0	0	17393	956	33	2	2027	2	WDR44	23	117570786	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	3147895	117570786	37699774	876	59777										
KIAA1210	0	genome.wustl.edu	37	chrX	118221557	118221557	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggtgccacatcactgcccctCttaagagcagagctctctga	9	14	3	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	118221557	118221557	C	G	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3636	p.K1212N	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	50	0	0	26	20	43.48	-	-	-	G	118221557	C	G	118221557	3	3	679	1	0	0	0	0	1	0	0	0	8266	912	32	2	1509	2	KIAA1210	23	118221557	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	650771	118221557	37049003	877	59778										
NKAP	0	genome.wustl.edu	37	chrX	119059264	119059264	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttgttctctctctttcgtctCtcttcttggttaaaggatgc	7	10	5	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	119059264	119059264	C	G	SNP	NKAP	ENST00000371410	human	ensembl	69_37n	-1	known	missense	c.1167	p.E389D	1.000	pfam_DUF926	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	94	0	0	131	88	40.18	-	-	-	G	119059264	C	G	119059264	3	3	679	1	0	0	0	0	1	0	0	0	10511	912	32	2	84	2	NKAP	23	119059264	Missense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	837707	119059264	36211296	878	59779										
LAMP2	0	genome.wustl.edu	37	chrX	119575637	119575637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ggctgaacccttagatcaaaGgtatttatctgaaatgctcc	8	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	119575637	119575637	G	T	SNP	LAMP2	ENST00000486593	human	ensembl	69_37n	-1	known	missense	c.584	p.P195H	0.993	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LAMP2	HGNC	ENSG00000005893	121	0	0	63	40	38.83	-	-	-	T	119575637	G	T	119575637	3	4	679	1	0	0	0	0	1	0	0	0	8672	987	35	4	490	4	LAMP2	23	119575637	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	516373	119575637	35694923	879	59780										
SMARCA1	0	genome.wustl.edu	37	chrX	128632007	128632007	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tcttgtccatcttgccagaaGagtttaaaacatcaatatct	5	9	4	2			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	128632007	128632007	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.1319	p.S440F	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	69	0	0	47	21	30.88	-	-	-	A	128632007	G	A	128632007	3	1	679	1	0	0	0	0	1	0	0	0	14857	942	33	2	1901	2	SMARCA1	23	128632007	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	9056370	128632007	26638553	880	59781										
SMARCA1	0	genome.wustl.edu	37	chrX	128638729	128638729	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	actgcatgaagtctttccacGagtttttgatcaccaagaca	7	10	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	128638729	128638729	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	silent	c.1149	p.L383	0.998	pfam_SNF2_N	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	196	0	0	117	60	33.9	-	-	-	A	128638729	G	A	128638729	2	1	679	1	0	0	0	0	0	0	0	1	14857	1045	37	1		1	SMARCA1	23	128638729	Silent	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	6722	128638729	26631831	881	59782										
SPANXN2	0	genome.wustl.edu	37	chrX	142795504	142795504	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	gaatttattttcgtatgcttCctgtagtaatacactattat	5	6	0	0			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	142795504	142795504	C	T	SNP	SPANXN2	ENST00000370498	human	ensembl	69_37n	-1	known	silent	c.174	p.R58	0.024	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924	632	0	0	290	177	37.82	-	-	-	T	142795504	C	T	142795504	2	4	679	1	0	0	0	0	0	0	0	1	15082	854	30	2		2	SPANXN2	23	142795504	Silent	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	14156775	142795504	12475056	882	59783										
FMR1	0	genome.wustl.edu	37	chrX	147010189	147010189	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tttctcagttttatgtgataGaatatgcagcatgtgatgca	9	5	1	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	147010189	147010189	G	A	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.283	p.E95K	1.000	pfam_Agenet	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	48	0	0	31	20	39.22	-	-	-	A	147010189	G	A	147010189	3	1	679	1	0	0	0	0	1	0	0	0	6006	943	33	2	301	2	FMR1	23	147010189	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	4214685	147010189	8260371	883	59784										
PNMA3	0	genome.wustl.edu	37	chrX	152225791	152225791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	tgaaccgagtcctcgggtcgGacaccaattgttcggctcca	11	13	0	1			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	152225791	152225791	G	C	SNP	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	missense	c.379	p.D127H	0.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	9	0	0	28	9	24.32	-	-	-	C	152225791	G	C	152225791	3	2	679	1	0	0	0	0	1	0	0	0	12229	1174	41	2	381	2	PNMA3	23	152225791	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	5215602	152225791	3044769	884	59785										
OPN1MW	0	genome.wustl.edu	37	chrX	153461463	153461463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ttttcgggaagaaggttgacGatggctctgaactctccagc	12	9	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	153461463	153461463	G	A	SNP	OPN1MW	ENST00000369935	human	ensembl	69_37n	1	known	missense	c.1027	p.D343N	1.000	prints_Opsin_red/grn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPN1MW	HGNC	ENSG00000147380	51	0	0	42	7	14.29	-	-	-	A	153461463	G	A	153461463	3	1	679	1	0	0	0	0	1	0	0	0	10951	1058	37	1	1049	1	OPN1MW	23	153461463	Missense_Mutation	SNP	G	TCGA-D8-A1JA-01A-11D-A13L-09	1235672	153461463	1809097	885	59786										
PLXNA3	0	genome.wustl.edu	37	chrX	153689482	153689482	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.674576271186441	597	3.58467669105617e-242	4.14779536849914	4.5110180013515	3.67850772440064	1.5759619037526e-14	5.13763580623348e-12	453	ctcccagatcaagatcccctCagacacgctgtccttgtacc	6	17	2	3			TCGA-D8-A1JA-01A-11D-A13L-09	TCGA-D8-A1JA-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ffcb6e0-9850-47c8-a75a-5ff47a6f1a2f	a20d8bfb-53ad-4a4e-bbc5-4f204a08b812	X	153689482	153689482	C	G	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	nonsense	c.638	p.S213*	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	44	0	0	56	30	34.48	-	-	-	G	153689482	C	G	153689482	4	3	679	1	0	0	0	0	0	1	0	0	12195	838	29	2	644	2	PLXNA3	23	153689482	Nonsense_Mutation	SNP	C	TCGA-D8-A1JA-01A-11D-A13L-09	228019	153689482	1581078	886	59787										
KIF21B	0	genome.wustl.edu	37	chr1	200959275	200959275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	cctgcggataccttggtctcCtccagctgcacgatggtggc	12	14	1	0			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	1	200959275	200959275	C	T	SNP	KIF21B	ENST00000477146	human	ensembl	69_37n	-1	known	missense	c.377	p.R126K	1.000	superfamily_Prefoldin	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF21B	HGNC	ENSG00000116852	23	0	0	26	10	27.78	-	-	-	T	200959275	C	T	200959275	3	4	680	1	0	0	0	0	1	0	0	0	8341	680	24	4	1913	4	KIF21B	1	200959275	Missense_Mutation	SNP	C	TCGA-D8-A1JB-01A-11D-A13L-09		200959275	48291346	1	59788										
FBXO28	0	genome.wustl.edu	37	chr1	224345435	224345435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	taggaaatctaaacgtcttcGgaatagaaagtaaattggaa	9	4	2	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	1	224345435	224345435	G	A	SNP	FBXO28	ENST00000366862	human	ensembl	69_37n	1	known	missense	c.1094	p.R365Q	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO28	HGNC	ENSG00000143756	24	0	0	28	6	17.65	-	-	-	A	224345435	G	A	224345435	3	1	680	1	0	0	0	0	1	0	0	0	5784	1116	39	1	1112	1	FBXO28	1	224345435	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	23386160	224345435	24905186	2	59789										
SUPT7L	0	genome.wustl.edu	37	chr2	27876556	27876556	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	acattgccttcttcactttcTtgaggctccattttcacatg	5	12	4	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	2	27876556	27876556	T	G	SNP	SUPT7L	ENST00000337768	human	ensembl	69_37n	-1	known	missense	c.1041	p.Q347H	1.000	NULL	pfam_BTP,smart_BTP	-	no_errors	SUPT7L	HGNC	ENSG00000119760	55	0	0	46	11	19.3	-	-	-	G	27876556	T	G	27876556	3	3	680	1	0	0	0	0	1	0	0	0	15492	1606	56	5	207	5	SUPT7L	2	27876556	Missense_Mutation	SNP	T	TCGA-D8-A1JB-01A-11D-A13L-09		27876556	215322817	3	59790										
TOP2B	0	genome.wustl.edu	37	chr3	25668734	25668734	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	tctaaacaagatgcgatgccTttccatatcagcaaaatatt	5	9	2	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	3	25668734	25668734	T	G	SNP	TOP2B	ENST00000264331	human	ensembl	69_37n	-1	known	silent	c.1960	p.R654	1.000	superfamily_Topo_IIA_cen,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2B	HGNC	ENSG00000077097	50	0	0	64	12	15.79	-	-	-	G	25668734	T	G	25668734	2	3	680	1	0	0	0	0	0	0	0	1	16462	1608	56	5		5	TOP2B	3	25668734	Silent	SNP	T	TCGA-D8-A1JB-01A-11D-A13L-09		25668734	172353696	4	59791										
LRRFIP2	0	genome.wustl.edu	37	chr3	37114294	37114294	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	ttcataccccaatttttttaTctttccaaagaagtgtctcc	3	11	3	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	3	37114294	37114294	T	C	SNP	LRRFIP2	ENST00000336686	human	ensembl	69_37n	-1	known	missense	c.1451	p.D484G	1.000	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	111	0	0	121	17	12.32	-	-	-	C	37114294	T	C	37114294	3	2	680	1	0	0	0	0	1	0	0	0	9094	1435	50	5	746	5	LRRFIP2	3	37114294	Missense_Mutation	SNP	T	TCGA-D8-A1JB-01A-11D-A13L-09	11445560	37114294	160908136	5	59792										
CLDND1	0	genome.wustl.edu	37	chr3	98240072	98240072	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	cattgtatcgaaaaagtgcaTcattataagtcttttcatct	5	7	4	0			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	3	98240072	98240072	T	C	SNP	CLDND1	ENST00000437922	human	ensembl	69_37n	-1	known	missense	c.266	p.D89G	0.959	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND1	HGNC	ENSG00000080822	71	0	0	53	10	15.87	-	-	-	C	98240072	T	C	98240072	3	2	680	1	0	0	0	0	1	0	0	0	3523	1435	50	5	580	5	CLDND1	3	98240072	Missense_Mutation	SNP	T	TCGA-D8-A1JB-01A-11D-A13L-09	61125778	98240072	99782358	6	59793										
HPS3	0	genome.wustl.edu	37	chr3	148877913	148877913	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	attctctgtagtccttctatGaagaatattaatcctttaac	4	8	2	2			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	3	148877913	148877913	G	A	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.1953	p.M651I	1.000	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	95	0	0	87	15	14.56	-	-	-	A	148877913	G	A	148877913	3	1	680	1	0	0	0	0	1	0	0	0	7391	1290	45	2	1995	2	HPS3	3	148877913	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	50637841	148877913	49144517	7	59794										
SI	0	genome.wustl.edu	37	chr3	164710170	164710170	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	ttgaatatatcccaggttggTttttcatcaaagaacctcga	7	8	2	2			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	3	164710170	164710170	T	A	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.4857	p.K1619N	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	53	0	0	45	5	10	-	-	-	A	164710170	T	A	164710170	3	1	680	1	0	0	0	0	1	0	0	0	14386	1722	60	5	654	5	SI	3	164710170	Missense_Mutation	SNP	T	TCGA-D8-A1JB-01A-11D-A13L-09	15832257	164710170	33312260	8	59795										
FAT1	0	genome.wustl.edu	37	chr4	187518179	187518179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	acccaatgttccacggcgtgGacacatactggttgggcgca	12	12	0	0			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	4	187518179	187518179	G	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.12515	p.S4172Y	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	45	0	0	61	8	11.59	-	-	-	T	187518179	G	T	187518179	3	4	680	1	0	0	0	0	1	0	0	0	5735	1174	41	2	1263	2	FAT1	4	187518179	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09		187518179	3636097	9	59796										
DOCK2	0	genome.wustl.edu	37	chr5	169138958	169138958	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	ggtggctgtccctattgaagAcatgcagaggatccatctgc	12	10	1	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	5	169138958	169138958	A	T	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.1502	p.D501V	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	87	0	0	103	36	25.9	-	-	-	T	169138958	A	T	169138958	3	4	680	1	0	0	0	0	1	0	0	0	4722	275	10	5	1564	5	DOCK2	5	169138958	Missense_Mutation	SNP	A	TCGA-D8-A1JB-01A-11D-A13L-09		169138958	11776302	10	59797										
HLA-B	0	genome.wustl.edu	37	chr6	31323567	31323567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	agtctctgagcggggaacagGgacttctgctcctgatctga	13	10	3	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	6	31323567	31323567	G	A	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	missense	c.638	p.P213L	0.000	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	8	0	0	5	6	54.55	-	-	-	A	31323567	G	A	31323567	3	1	680	1	0	0	0	0	1	0	0	0	7247	1247	43	4		4	HLA-B	6	31323567	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09		31323567	139791500	11	59798										
AHI1	0	genome.wustl.edu	37	chr6	135751072	135751072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	tttggtatggattaacaaacGttttccattgggatgaatct	9	5	1	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	6	135751072	135751072	G	A	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	missense	c.2440	p.R814C	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	72	0	0	32	7	17.95	-	-	-	A	135751072	G	A	135751072	3	1	680	1	0	0	0	0	1	0	0	0	413	1145	40	1	1255	1	AHI1	6	135751072	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	104427505	135751072	35363995	12	59799										
TBP	0	genome.wustl.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	6	170871004	170871004	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	1	known	silent	c.180	p.Q60	0.991	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	13	0	0	31	9	22.5	-	-	-	A	170871004	G	A	170871004	2	1	680	1	0	0	0	0	0	0	0	1	15739	962	34	4		4	TBP	6	170871004	Silent	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	35119932	170871004	244063	13	59800										
OLAH	0	genome.wustl.edu	37	chr10	15115160	15115160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	acttttatcttctggatcctGcgaacgagaaattaatcaag	7	8	3	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	10	15115160	15115160	G	T	SNP	OLAH	ENST00000378217	human	ensembl	69_37n	1	known	missense	c.889	p.A297S	0.000	pfam_Thioesterase	pfam_Thioesterase	-	no_errors	OLAH	HGNC	ENSG00000152463	51	0	0	55	10	15.38	-	-	-	T	15115160	G	T	15115160	3	4	680	1	0	0	0	0	1	0	0	0	10924	1319	46	4	919	4	OLAH	10	15115160	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09		15115160	120419587	14	59801										
FAM21C	0	genome.wustl.edu	37	chr10	46254848	46254848	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	ttcagatgaggaggactctgAggtatggaattcttttgctt	12	5	3	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	10	46254848	46254848	A	T	SNP	FAM21C	ENST00000374362	human	ensembl	69_37n	1	known	missense	c.1634	p.E545V	1.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661	61	0	0	72	10	12.2	-	-	-	T	46254848	A	T	46254848	3	4	680	1	0	0	0	0	1	0	0	0	5584	318	11	5	1700	5	FAM21C	10	46254848	Missense_Mutation	SNP	A	TCGA-D8-A1JB-01A-11D-A13L-09	31139688	46254848	89279899	15	59802										
THAP2	0	genome.wustl.edu	37	chr12	72068026	72068026	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	gaaaagaatgggttcgcctgGttaggcgcaaaaattttgtg	13	5	0	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	12	72068026	72068026	G	T	SNP	THAP2	ENST00000308086	human	ensembl	69_37n	1	known	missense	c.115	p.V39F	1.000	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP2	HGNC	ENSG00000173451	43	0	0	44	9	16.98	-	-	-	T	72068026	G	T	72068026	3	4	680	1	0	0	0	0	1	0	0	0	15939	1261	44	4	121	4	THAP2	12	72068026	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09		72068026	61783869	16	59803										
SEZ6	0	genome.wustl.edu	37	chr17	27286098	27286098	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	agcactgaggtcccggggtcCgactggaactgaatggtgac	15	10	0	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	17	27286098	27286098	C	A	SNP	SEZ6	ENST00000317338	human	ensembl	69_37n	-1	known	silent	c.2052	p.S684	0.136	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015	44	0	0	40	6	13.04	-	-	-	A	27286098	C	A	27286098	2	1	680	1	0	0	0	0	0	0	0	1	14230	639	23	3		3	SEZ6	17	27286098	Silent	SNP	C	TCGA-D8-A1JB-01A-11D-A13L-09		27286098	53909112	17	59804										
RECQL5	0	genome.wustl.edu	37	chr17	73624831	73624831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	caggggtgccctggtctctgGgcgggcaggtgctggtagag	20	9	1	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	17	73624831	73624831	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.2501	p.P834L	0.001	NULL	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	54	0	0	68	9	11.69	-	-	-	A	73624831	G	A	73624831	3	1	680	1	0	0	0	0	1	0	0	0	13286	1232	43	4	490	4	RECQL5	17	73624831	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	46338733	73624831	7570379	18	59805										
CDC37	0	genome.wustl.edu	37	chr19	10502337	10502337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	gctggccttagagttggggaCccagaggccagagtcaatgc	15	10	1	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	19	10502337	10502337	C	T	SNP	CDC37	ENST00000222005	human	ensembl	69_37n	-1	known	missense	c.1027	p.V343I	1.000	pfam_Cdc37_C	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401	24	0	0	31	6	16.22	-	-	-	T	10502337	C	T	10502337	3	4	680	1	0	0	0	0	1	0	0	0	3097	507	18	4	113	4	CDC37	19	10502337	Missense_Mutation	SNP	C	TCGA-D8-A1JB-01A-11D-A13L-09		10502337	48626646	19	59806										
FXYD5	0	genome.wustl.edu	37	chr19	35651628	35651628	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	atagaaacaccacaaccccaGacccagacccagcaactgga	6	16	0	3			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	19	35651628	35651628	G	T	SNP	FXYD5	ENST00000342879	human	ensembl	69_37n	1	known	missense	c.216	p.Q72H	0.006	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD5	HGNC	ENSG00000089327	85	0	0	99	12	10.81	-	-	-	T	35651628	G	T	35651628	3	4	680	1	0	0	0	0	1	0	0	0	6170	933	33	2	230	2	FXYD5	19	35651628	Missense_Mutation	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09	25149291	35651628	23477355	20	59807										
HNRNPUL1	0	genome.wustl.edu	37	chr19	41778020	41778020	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	gatgaagcaaggagcacccaCcagcttcctcccgcctgaag	10	15	0	2			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	19	41778020	41778020	C	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	69_37n	1	known	missense	c.452	p.T151N	0.001	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	33	0	0	47	7	12.96	-	-	-	A	41778020	C	A	41778020	3	1	680	1	0	0	0	0	1	0	0	0	7325	507	18	4	462	4	HNRNPUL1	19	41778020	Missense_Mutation	SNP	C	TCGA-D8-A1JB-01A-11D-A13L-09	6126392	41778020	17350963	21	59808										
CST9	0	genome.wustl.edu	37	chr20	23584193	23584193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	ctttgtcagctgctcctgtgCccacaccacaccccatgcag	7	18	1	0			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	20	23584193	23584193	C	T	SNP	CST9	ENST00000376971	human	ensembl	69_37n	-1	known	missense	c.434	p.G145D	0.000	NULL	pfam_Prot_inh_cystat	-	no_errors	CST9	HGNC	ENSG00000173335	54	0	0	112	19	14.5	-	-	-	T	23584193	C	T	23584193	3	4	680	1	0	0	0	0	1	0	0	0	4011	739	26	4	49	4	CST9	20	23584193	Missense_Mutation	SNP	C	TCGA-D8-A1JB-01A-11D-A13L-09		23584193	39441327	22	59809										
ARAF	0	genome.wustl.edu	37	chrX	47422467	47422467	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.994090990356536	0.664705882352941	NA	0.664705882352941	1	1	0	caagcaacgcacggtggtgaGtcatggaagcgaaatggcag	15	8	1	1			TCGA-D8-A1JB-01A-11D-A13L-09	TCGA-D8-A1JB-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54621c54-b7ef-48e4-aa68-e2fe10bf0afb	999fc643-568d-4513-9a75-6c68987a2628	X	47422467	47422467	G	A	SNP	ARAF	ENST00000489496	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	ARAF	HGNC	ENSG00000078061	37	0	0	33	7	17.5	-	-	-	A	47422467	G	A	47422467	5	1	680	1	0	0	0	0	0	0	1	0	839	1044	36	4		4	ARAF	23	47422467	Splice_Site	SNP	G	TCGA-D8-A1JB-01A-11D-A13L-09		47422467	107848093	23	59810										
KCNQ4	0	genome.wustl.edu	37	chr1	41300696	41300696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gagacactgcgaccgtacgaCgtgaaggacgtcattgagca	13	10	1	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	41300696	41300696	C	T	SNP	KCNQ4	ENST00000443478	human	ensembl	69_37n	1	novel	missense	c.1252	p.R418C	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNQ4	HGNC	ENSG00000117013	25	0	0	22	8	26.67	-	-	-	T	41300696	C	T	41300696	3	4	681	1	0	0	0	0	1	0	0	0	8139	535	19	1	1717	1	KCNQ4	1	41300696	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		41300696	207949925	1	59811										
PVRL4	0	genome.wustl.edu	37	chr1	161043062	161043062	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gagactatcagggtggccctCggctctcagccctacactct	10	15	3	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	161043062	161043062	C	G	SNP	PVRL4	ENST00000368012	human	ensembl	69_37n	-1	known	missense	c.1261	p.E421Q	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PVRL4	HGNC	ENSG00000143217	31	0	0	41	14	25.45	-	-	-	G	161043062	C	G	161043062	3	3	681	1	0	0	0	0	1	0	0	0	12925	893	31	3	279	3	PVRL4	1	161043062	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	119742366	161043062	88207559	2	59812										
C1orf226	0	genome.wustl.edu	37	chr1	162351892	162351892	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aaagtgaatgacttcctgagGagaaaggagccctccagcct	11	10	0	4			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	162351892	162351892	G	A	SNP	C1orf226	ENST00000426197	human	ensembl	69_37n	1	known	silent	c.330	p.R110	0.999	NULL	NULL	-	no_errors	C1orf226	HGNC	ENSG00000239887	14	0	0	15	18	54.55	-	-	-	A	162351892	G	A	162351892	2	1	681	1	0	0	0	0	0	0	0	1	2052	1165	41	2		2	C1orf226	1	162351892	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	1308830	162351892	86898729	3	59813										
ASTN1	0	genome.wustl.edu	37	chr1	176863701	176863701	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agtcccaggcctcttaccctCtgggtctggttgttggtcac	11	13	4	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	176863701	176863701	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	silent	c.2961	p.Q987	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	78	0	0	90	23	20.35	-	-	-	T	176863701	C	T	176863701	2	4	681	1	0	0	0	0	0	0	0	1	1068	912	32	2		2	ASTN1	1	176863701	Silent	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	14511809	176863701	72386920	4	59814										
RASAL2	0	genome.wustl.edu	37	chr1	178408562	178408562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tttttctacttttaggtctcGtgggctgcctaaactaaaag	8	8	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	178408562	178408562	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.680	p.R227H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	77	0	0	46	38	45.24	-	-	-	A	178408562	G	A	178408562	3	1	681	1	0	0	0	0	1	0	0	0	13147	1145	40	1	719	1	RASAL2	1	178408562	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	1544861	178408562	70842059	5	59815										
PRG4	0	genome.wustl.edu	37	chr1	186280194	186280194	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ttctggatgctaagtccattCagtccaccatctccagctcg	7	14	3	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	186280194	186280194	C	T	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	1	known	silent	c.3528	p.F1176	0.005	superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	163	0	0	150	61	28.91	-	-	-	T	186280194	C	T	186280194	2	4	681	1	0	0	0	0	0	0	0	1	12562	825	29	2		2	PRG4	1	186280194	Silent	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	7871632	186280194	62970427	6	59816										
SRGAP2	0	genome.wustl.edu	37	chr1	206619542	206619542	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	cctgccaagcccacgtgaatGagctgatcaaaaccatcatc	7	14	2	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	206619542	206619542	G	C	SNP	SRGAP2	ENST00000414007	human	ensembl	69_37n	1	known	missense	c.1576	p.E526Q	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon	SRGAP2	HGNC	ENSG00000163486	63	0	0	68	17	19.77	-	-	-	C	206619542	G	C	206619542	3	2	681	1	0	0	0	0	1	0	0	0	15237	1291	45	2	1794	2	SRGAP2	1	206619542	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	20339348	206619542	42631079	7	59817										
IL20	0	genome.wustl.edu	37	chr1	207039354	207039354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tttctgagatacggggcagtGtggtacgtaagcgggtatct	15	6	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	207039354	207039354	G	A	SNP	IL20	ENST00000367096	human	ensembl	69_37n	1	known	missense	c.157	p.V53M	0.694	pfam_Interleukin-10/19/20/24,superfamily_4_helix_cytokine-like_core,smart_Interleukin-10/19/20/24,prints_Interleukin-24	pfam_Interleukin-10/19/20/24,superfamily_4_helix_cytokine-like_core,smart_Interleukin-10/19/20/24,prints_Interleukin-20,prints_Interleukin-24	-	no_errors	IL20	HGNC	ENSG00000162891	57	0	0	61	17	21.79	-	-	-	A	207039354	G	A	207039354	3	1	681	1	0	0	0	0	1	0	0	0	7721	1377	48	4	159	4	IL20	1	207039354	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	419812	207039354	42211267	8	59818										
C1orf198	0	genome.wustl.edu	37	chr1	230979431	230979431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	cggcctcaggcccctcccctCgggaccgctcagcattgatc	10	19	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	230979431	230979431	C	T	SNP	C1orf198	ENST00000366663	human	ensembl	69_37n	-1	known	missense	c.596	p.R199Q	1.000	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280	40	0	0	50	18	26.47	-	-	-	T	230979431	C	T	230979431	3	4	681	1	0	0	0	0	1	0	0	0	2045	884	31	1	395	1	C1orf198	1	230979431	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	23940077	230979431	18271190	9	59819										
MRPL53	0	genome.wustl.edu	37	chr2	74699368	74699368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agcgccgcgcataatcaggcGatgcccgtctcctggggaag	14	13	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	74699368	74699368	G	A	SNP	MRPL53	ENST00000258105	human	ensembl	69_37n	-1	known	missense	c.217	p.R73C	1.000	superfamily_Thioredoxin-like_fold	pfam_Ribosomal_L53_mit,superfamily_Thioredoxin-like_fold	-	no_errors	MRPL53	HGNC	ENSG00000204822	20	0	0	24	11	31.43	-	-	-	A	74699368	G	A	74699368	3	1	681	1	0	0	0	0	1	0	0	0	9889	1058	37	1	125	1	MRPL53	2	74699368	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		74699368	168500005	10	59820										
RMND5A	0	genome.wustl.edu	37	chr2	86993049	86993049	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gagaactcaccatatgttcaCctacttgatgcaaaccagtg	7	11	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	86993049	86993049	C	A	SNP	RMND5A	ENST00000283632	human	ensembl	69_37n	1	known	missense	c.756	p.H252Q	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5A	HGNC	ENSG00000153561	136	0	0	65	35	35	-	-	-	A	86993049	C	A	86993049	3	1	681	1	0	0	0	0	1	0	0	0	13483	506	18	4	778	4	RMND5A	2	86993049	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	12293681	86993049	156206324	11	59821										
IL18R1	0	genome.wustl.edu	37	chr2	102998106	102998106	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gtaatatagttccggttcttCttggaccaaagcttaaccat	7	9	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	102998106	102998106	C	G	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	1	known	missense	c.652	p.L218V	0.549	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	163	0	0	78	35	30.97	-	-	-	G	102998106	C	G	102998106	3	3	681	1	0	0	0	0	1	0	0	0	7701	913	32	2	670	2	IL18R1	2	102998106	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	16005057	102998106	140201267	12	59822										
SLC4A3	0	genome.wustl.edu	37	chr2	220501075	220501075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	cgagctgatcgtgtccaccgCtgtgctcggcgtcctcttct	11	15	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	220501075	220501075	C	A	SNP	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	missense	c.2324	p.A775D	0.983	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	51	0	0	33	16	32.65	-	-	-	A	220501075	C	A	220501075	3	1	681	1	0	0	0	0	1	0	0	0	14744	797	28	4	2378	4	SLC4A3	2	220501075	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	117502969	220501075	22698298	13	59823										
CNTN6	0	genome.wustl.edu	37	chr3	1414111	1414111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tatggtttttcaatggagatGtcatagacttaaaaaaagga	9	3	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	1414111	1414111	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.1621	p.V541I	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	134	0	0	86	48	35.82	-	-	-	A	1414111	G	A	1414111	3	1	681	1	0	0	0	0	1	0	0	0	3675	1377	48	4	1667	4	CNTN6	3	1414111	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		1414111	196608319	14	59824										
MRPS25	0	genome.wustl.edu	37	chr3	15094076	15094076	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ctcccgcaggcagtactttcGagggccgaagttggctgggt	15	11	0	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	15094076	15094076	G	A	SNP	MRPS25	ENST00000253686	human	ensembl	69_37n	-1	known	nonsense	c.394	p.R132*	0.836	NULL	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	-	no_errors	MRPS25	HGNC	ENSG00000131368	59	0	0	44	41	48.24	-	-	-	A	15094076	G	A	15094076	4	1	681	1	0	0	0	0	0	1	0	0	9908	1066	37	1	131	1	MRPS25	3	15094076	Nonsense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	13679965	15094076	182928354	15	59825										
RBM6	0	genome.wustl.edu	37	chr3	50091779	50091779	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tccttacagtgtaaggcaaaCattggtgggcaccgatcttc	10	10	1	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	50091779	50091779	C	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.1644	p.N548K	0.672	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	107	0	0	30	48	61.54	-	-	-	G	50091779	C	G	50091779	3	3	681	1	0	0	0	0	1	0	0	0	13227	477	17	4	1670	4	RBM6	3	50091779	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	34997703	50091779	147930651	16	59826										
KIAA2018	0	genome.wustl.edu	37	chr3	113375166	113375166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ggtaagataatctcttttgaCggtcaattggtggggggcca	14	6	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	113375166	113375166	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.5363	p.R1788H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	55	0	0	37	21	36.21	-	-	-	T	113375166	C	T	113375166	3	4	681	1	0	0	0	0	1	0	0	0	8320	536	19	1	1378	1	KIAA2018	3	113375166	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	63283387	113375166	84647264	17	59827										
MRPL3	0	genome.wustl.edu	37	chr3	131188558	131188558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	actttcagtccatattctgtCctgtatatgtttcccatttt	4	10	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	131188558	131188558	C	T	SNP	MRPL3	ENST00000511168	human	ensembl	69_37n	-1	putative	missense	c.841	p.D281N	0.991	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPL3	HGNC	ENSG00000114686	120	0	0	78	25	24.27	-	-	-	T	131188558	C	T	131188558	3	4	681	1	0	0	0	0	1	0	0	0	9865	854	30	2	260	2	MRPL3	3	131188558	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	17813392	131188558	66833872	18	59828										
PIK3CB	0	genome.wustl.edu	37	chr3	138374293	138374293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	cactttagtagtccagctttCcctgagcgcctcatcaaatt	6	13	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	138374293	138374293	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	69_37n	-1	known	missense	c.3151	p.E1051K	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382	61	0	0	67	29	30.21	-	-	-	T	138374293	C	T	138374293	3	4	681	1	0	0	0	0	1	0	0	0	11988	864	30	2	63	2	PIK3CB	3	138374293	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	7185735	138374293	59648137	19	59829										
SMC4	0	genome.wustl.edu	37	chr3	160141276	160141276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aaaatactcctcgtttatttGatttagtaaaagtaaaagat	5	4	0	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	160141276	160141276	G	C	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.2083	p.D695H	1.000	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	68	0	0	57	22	27.85	-	-	-	C	160141276	G	C	160141276	3	2	681	1	0	0	0	0	1	0	0	0	14874	1290	45	2	2133	2	SMC4	3	160141276	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	21766983	160141276	37881154	20	59830										
THAP9	0	genome.wustl.edu	37	chr4	83839429	83839429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gttacaaagactgtctttcaCgaagagggtatttgtcaaga	10	6	3	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	83839429	83839429	C	T	SNP	THAP9	ENST00000302236	human	ensembl	69_37n	1	known	silent	c.2064	p.H688	0.001	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152	42	0	0	31	19	38	-	-	-	T	83839429	C	T	83839429	2	4	681	1	0	0	0	0	0	0	0	1	15946	535	19	1		1	THAP9	4	83839429	Silent	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		83839429	107314847	21	59831										
HADH	0	genome.wustl.edu	37	chr4	108954346	108954346	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ccttaggtgacgcatccaaaGaagacattgacactgctatg	9	10	0	4			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	108954346	108954346	G	A	SNP	HADH	ENST00000403312	human	ensembl	69_37n	1	known	missense	c.775	p.E259K	1.000	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,pfam_AlaDH/PNT_NAD(H)-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_UDP-Glc/GDP-Man_DH_N,superfamily_6-PGluconate_DH_C-like	-	no_errors	HADH	HGNC	ENSG00000138796	119	0	0	71	38	34.86	-	-	-	A	108954346	G	A	108954346	3	1	681	1	0	0	0	0	1	0	0	0	6993	943	33	2	805	2	HADH	4	108954346	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	25114917	108954346	82199930	22	59832										
TRIML1	0	genome.wustl.edu	37	chr4	189061035	189061035	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tgccaaggcgctctccgatgAcgagcagggtggaagcgcct	15	12	1	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	189061035	189061035	A	T	SNP	TRIML1	ENST00000332517	human	ensembl	69_37n	1	known	missense	c.323	p.D108V	0.005	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108	19	0	0	20	7	25.93	-	-	-	T	189061035	A	T	189061035	3	4	681	1	0	0	0	0	1	0	0	0	16646	275	10	5	325	5	TRIML1	4	189061035	Missense_Mutation	SNP	A	TCGA-D8-A1JC-01A-11D-A13L-09	80106689	189061035	2093241	23	59833										
PDZD2	0	genome.wustl.edu	37	chr5	31799670	31799670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aagcgcagggggggcaagaaGaggaaaacccaccagggtcc	16	10	0	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	31799670	31799670	G	C	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.315	p.K105N	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	87	0	0	55	23	29.49	-	-	-	C	31799670	G	C	31799670	3	2	681	1	0	0	0	0	1	0	0	0	11774	933	33	2	317	2	PDZD2	5	31799670	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		31799670	149115590	24	59834										
NIPBL	0	genome.wustl.edu	37	chr5	37020923	37020923	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	atgatgcttgcttgattgttCgatacttggcctccatgagg	11	8	0	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	37020923	37020923	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	nonsense	c.5272	p.R1758*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	126	0	0	104	39	27.27	-	-	-	T	37020923	C	T	37020923	4	4	681	1	0	0	0	0	0	1	0	0	10500	876	31	1	5374	1	NIPBL	5	37020923	Nonsense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	5221253	37020923	143894337	25	59835										
DAB2	0	genome.wustl.edu	37	chr5	39383284	39383284	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ggaagagaacaggaggtgatGccgtttgttaagaatggatt	15	3	0	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	39383284	39383284	G	A	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	silent	c.777	p.G259	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	109	0	0	76	39	33.91	-	-	-	A	39383284	G	A	39383284	2	1	681	1	0	0	0	0	0	0	0	1	4250	1306	46	4		4	DAB2	5	39383284	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	2362361	39383284	141531976	26	59836										
FAM81B	0	genome.wustl.edu	37	chr5	94749730	94749730	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tgaacaaccaggcgcgtaccAtagctttccttcttgaacaa	7	12	1	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	94749730	94749730	A	G	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	1	known	missense	c.373	p.I125V	0.719	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	94	0	0	75	40	34.78	-	-	-	G	94749730	A	G	94749730	3	3	681	1	0	0	0	0	1	0	0	0	5674	217	8	5	387	5	FAM81B	5	94749730	Missense_Mutation	SNP	A	TCGA-D8-A1JC-01A-11D-A13L-09	55366446	94749730	86165530	27	59837										
PCDHB3	0	genome.wustl.edu	37	chr5	140482555	140482555	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aagccaattatccccaacttCgttgctcagggtgcagagag	10	11	1	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	140482555	140482555	C	A	SNP	PCDHB3	ENST00000231130	human	ensembl	69_37n	1	known	missense	c.2322	p.F774L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	144	0	0	89	43	32.58	-	-	-	A	140482555	C	A	140482555	3	1	681	1	0	0	0	0	1	0	0	0	11616	883	31	3	2324	3	PCDHB3	5	140482555	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	45732825	140482555	40432705	28	59838										
CAMK2A	0	genome.wustl.edu	37	chr5	149637130	149637130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gcggggccaaactcacaggtCgaagatcaggtagtggtgtc	15	9	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	149637130	149637130	C	T	SNP	CAMK2A	ENST00000398376	human	ensembl	69_37n	-1	known	missense	c.268	p.D90N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808	74	0	0	51	30	37.04	-	-	-	T	149637130	C	T	149637130	3	4	681	1	0	0	0	0	1	0	0	0	2624	884	31	1	1265	1	CAMK2A	5	149637130	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	9154575	149637130	31278130	29	59839										
TBX18	0	genome.wustl.edu	37	chr6	85466511	85466511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ccccgaggcaggcgagtctgGatgaatgtacacacggggtg	16	10	1	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	85466511	85466511	G	A	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	missense	c.676	p.P226S	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	46	0	0	26	25	49.02	-	-	-	A	85466511	G	A	85466511	3	1	681	1	0	0	0	0	1	0	0	0	15748	1174	41	2	1167	2	TBX18	6	85466511	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		85466511	85648556	30	59840										
GOPC	0	genome.wustl.edu	37	chr6	117894762	117894762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ttatcatgagcaggtcccttCatatctcgtcctagcaattg	7	11	3	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	117894762	117894762	C	T	SNP	GOPC	ENST00000368498	human	ensembl	69_37n	-1	known	missense	c.684	p.M228I	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932	203	0	0	107	62	36.69	-	-	-	T	117894762	C	T	117894762	3	4	681	1	0	0	0	0	1	0	0	0	6622	826	29	2	724	2	GOPC	6	117894762	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	32428251	117894762	53220305	31	59841										
NKAIN2	0	genome.wustl.edu	37	chr6	124604227	124604227	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	cctggcaaattttgtacataTtattatcgtcattcttggtt	6	7	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	124604227	124604227	T	A	SNP	NKAIN2	ENST00000368417	human	ensembl	69_37n	1	known	missense	c.131	p.I44N	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	193	0	0	113	60	34.68	-	-	-	A	124604227	T	A	124604227	3	1	681	1	0	0	0	0	1	0	0	0	10508	1493	52	5	137	5	NKAIN2	6	124604227	Missense_Mutation	SNP	T	TCGA-D8-A1JC-01A-11D-A13L-09	6709465	124604227	46510840	32	59842										
EYA4	0	genome.wustl.edu	37	chr6	133783840	133783840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	attacagagtggctgcctcaGttacagcccagggttctcta	10	11	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	133783840	133783840	G	A	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	missense	c.662	p.S221N	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	72	0	0	38	19	33.33	-	-	-	A	133783840	G	A	133783840	3	1	681	1	0	0	0	0	1	0	0	0	5368	1029	36	4	692	4	EYA4	6	133783840	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	9179613	133783840	37331227	33	59843										
PCLO	0	genome.wustl.edu	37	chr7	82544011	82544011	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gcccaatttaccttcactgtCtgacatggcatgttggaagt	9	10	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	82544011	82544011	C	G	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.13291	p.D4431H	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	71	0	0	51	27	34.62	-	-	-	G	82544011	C	G	82544011	3	3	681	1	0	0	0	0	1	0	0	0	11656	913	32	2	2230	2	PCLO	7	82544011	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		82544011	76594652	34	59844										
NAMPT	0	genome.wustl.edu	37	chr7	105893591	105893591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agcaactgggtccttgaagaCgttaatctgaaatccaaatt	8	8	1	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	105893591	105893591	C	G	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	missense	c.1237	p.V413L	1.000	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835	91	0	0	59	25	29.76	-	-	-	G	105893591	C	G	105893591	3	3	681	1	0	0	0	0	1	0	0	0	10221	536	19	3	246	3	NAMPT	7	105893591	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	23349580	105893591	53245072	35	59845										
PPAPDC1B	0	genome.wustl.edu	37	chr8	38124737	38124737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ctagctttctaggttaaattCaatgatgtgaaaacaagcat	7	6	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	38124737	38124737	C	G	SNP	PPAPDC1B	ENST00000419686	human	ensembl	69_37n	-1	known	missense	c.511	p.E171Q	0.043	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC1B	HGNC	ENSG00000147535	72	0	0	203	114	35.74	-	-	-	G	38124737	C	G	38124737	3	3	681	1	0	0	0	0	1	0	0	0	12367	835	29	2	384	2	PPAPDC1B	8	38124737	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		38124737	108239285	36	59846										
RBM12B	0	genome.wustl.edu	37	chr8	94747082	94747082	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ttttcaaaagcaccaactgaGtatattggtgggtcttttga	9	6	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	94747082	94747082	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	silent	c.1557	p.Y519	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	53	0	0	50	47	48.45	-	-	-	A	94747082	G	A	94747082	2	1	681	1	0	0	0	0	0	0	0	1	13197	1024	36	4		4	RBM12B	8	94747082	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	56622345	94747082	51616940	37	59847										
FBXO32	0	genome.wustl.edu	37	chr8	124526556	124526556	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agggatgtgagctgtgacttTgctatcagctccaacagctg	12	9	1	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	124526556	124526556	T	C	SNP	FBXO32	ENST00000517956	human	ensembl	69_37n	-1	known	silent	c.390	p.A130	1.000	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO32	HGNC	ENSG00000156804	67	0	0	47	83	63.85	-	-	-	C	124526556	T	C	124526556	2	2	681	1	0	0	0	0	0	0	0	1	5788	1799	63	5		5	FBXO32	8	124526556	Silent	SNP	T	TCGA-D8-A1JC-01A-11D-A13L-09	29779474	124526556	21837466	38	59848										
KCNQ3	0	genome.wustl.edu	37	chr8	133192479	133192479	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tccatccgcagcatgcgcagGatctgcaggaagcgcaggct	13	13	1	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	133192479	133192479	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	silent	c.702	p.I234	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	39	0	0	66	23	25.84	-	-	-	A	133192479	G	A	133192479	2	1	681	1	0	0	0	0	0	0	0	1	8138	1164	41	2		2	KCNQ3	8	133192479	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	8665923	133192479	13171543	39	59849										
CYP11B1	0	genome.wustl.edu	37	chr8	143957771	143957771	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gtgtactgttgagggcggctGaaggccagttcctgatagat	15	7	0	4			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	143957771	143957771	G	A	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	silent	c.840	p.F280	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	102	0	0	131	30	18.63	-	-	-	A	143957771	G	A	143957771	2	1	681	1	0	0	0	0	0	0	0	1	4176	1281	45	2		2	CYP11B1	8	143957771	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	10765292	143957771	2406251	40	59850										
FANCG	0	genome.wustl.edu	37	chr9	35076497	35076497	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tgagtgccacaatgaaggggTgaggctaggtcaggtggtgg	19	5	1	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	9	35076497	35076497	T	C	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	silent	c.1008	p.S336	0.768	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	84	0	0	22	26	54.17	-	-	-	C	35076497	T	C	35076497	2	2	681	1	0	0	0	0	0	0	0	1	5714	1683	59	5		5	FANCG	9	35076497	Silent	SNP	T	TCGA-D8-A1JC-01A-11D-A13L-09		35076497	106136934	41	59851										
TET1	0	genome.wustl.edu	37	chr10	70333071	70333071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ggtctacgtctcctacctctGtaataaaattcctcttggca	6	12	4	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	10	70333071	70333071	G	A	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.976	p.V326I	0.985	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	46	0	0	29	19	39.58	-	-	-	A	70333071	G	A	70333071	3	1	681	1	0	0	0	0	1	0	0	0	15864	1377	48	4	978	4	TET1	10	70333071	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		70333071	65201676	42	59852										
ABTB2	0	genome.wustl.edu	37	chr11	34192619	34192619	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aactgaaacagtgttcgggtCtgcccagaagagacccaaag	11	10	1	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	34192619	34192619	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	splice_site	c.1398-1	e5-1	1.000	-	-	-	no_errors	ABTB2	HGNC	ENSG00000166016	42	0	0	6	17	73.91	-	-	-	T	34192619	C	T	34192619	5	4	681	1	0	0	0	0	0	0	1	0	103	927	32	2	1732	2	ABTB2	11	34192619	Splice_Site	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		34192619	100813897	43	59853										
LRP4	0	genome.wustl.edu	37	chr11	46920500	46920500	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tccacagtcatcgtcgccatCgcagtggtagatgtcgagga	12	11	1	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	46920500	46920500	C	G	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.631	p.D211H	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	27	0	0	6	6	50	-	-	-	G	46920500	C	G	46920500	3	3	681	1	0	0	0	0	1	0	0	0	9025	884	31	3	5218	3	LRP4	11	46920500	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	12727881	46920500	88086016	44	59854										
P4HA3	0	genome.wustl.edu	37	chr11	73978162	73978162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tctcccttgcctctgatttgCgaggcacagacaaagctgac	9	13	2	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	73978162	73978162	C	T	SNP	P4HA3	ENST00000427714	human	ensembl	69_37n	-1	putative	missense	c.1759	p.A587T	0.000	NULL	pfam_Pro_4_hyd_alph_N,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380	17	0	0	19	24	55.81	-	-	-	T	73978162	C	T	73978162	3	4	681	1	0	0	0	0	1	0	0	0	11431	783	27	1		1	P4HA3	11	73978162	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	27057662	73978162	61028354	45	59855										
ADAMTS20	0	genome.wustl.edu	37	chr12	43823449	43823449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agaaccatgtcgccattgtgCcatcttttttatgagaacag	8	9	1	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	12	43823449	43823449	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3460	p.A1154T	0.644	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	71	0	0	66	24	26.67	-	-	-	T	43823449	C	T	43823449	3	4	681	1	0	0	0	0	1	0	0	0	266	739	26	4	2335	4	ADAMTS20	12	43823449	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		43823449	90028446	46	59856										
LRRIQ1	0	genome.wustl.edu	37	chr12	85438525	85438525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	atggagcagtttctaataatCatatgcatttaagaacagga	8	5	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	12	85438525	85438525	C	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.274	p.H92Y	0.587	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	58	0	0	57	19	25	-	-	-	T	85438525	C	T	85438525	3	4	681	1	0	0	0	0	1	0	0	0	9095	826	29	2	284	2	LRRIQ1	12	85438525	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	41615076	85438525	48413370	47	59857										
SACS	0	genome.wustl.edu	37	chr13	23915127	23915127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tactgtctattactgaaataGaaagtcgcagatctgctggg	10	7	2	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	13	23915127	23915127	G	C	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.2888	p.S963C	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	53	0	0	12	24	66.67	-	-	-	C	23915127	G	C	23915127	3	2	681	1	0	0	0	0	1	0	0	0	13890	942	33	2	10855	2	SACS	13	23915127	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		23915127	91254751	48	59858										
MMP14	0	genome.wustl.edu	37	chr14	23311622	23311622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	acgtggctggacctcagcatCcagaattacacccccaaggt	9	14	1	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	23311622	23311622	C	G	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	1	known	missense	c.384	p.I128M	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	39	0	0	32	7	17.95	-	-	-	G	23311622	C	G	23311622	3	3	681	1	0	0	0	0	1	0	0	0	9724	845	30	2	398	2	MMP14	14	23311622	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		23311622	84037918	49	59859										
TGM1	0	genome.wustl.edu	37	chr14	24729190	24729190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	accaatctgtgcttcggtccCgtagtaaattctcccagact	7	13	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	24729190	24729190	C	T	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.832	p.G278R	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	46	0	0	22	13	37.14	-	-	-	T	24729190	C	T	24729190	3	4	681	1	0	0	0	0	1	0	0	0	15924	652	23	1	1665	1	TGM1	14	24729190	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	1417568	24729190	82620350	50	59860										
RALGAPA1	0	genome.wustl.edu	37	chr14	36192403	36192403	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gcgatgacaatactgacagtAagtcatcccaaagttctcgg	9	10	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	36192403	36192403	A	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	nonsense	c.1934	p.L645*	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	65	0	0	61	33	35.11	-	-	-	T	36192403	A	T	36192403	4	4	681	1	0	0	0	0	0	1	0	0	13096	372	13	5	4433	5	RALGAPA1	14	36192403	Nonsense_Mutation	SNP	A	TCGA-D8-A1JC-01A-11D-A13L-09	11463213	36192403	71157137	51	59861										
TC2N	0	genome.wustl.edu	37	chr14	92268677	92268677	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gaaatgtgctgatacatataGaatgggttatacacatcata	8	5	1	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	92268677	92268677	G	C	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.390	p.F130L	0.992	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	68	0	0	47	15	24.19	-	-	-	C	92268677	G	C	92268677	3	2	681	1	0	0	0	0	1	0	0	0	15760	933	33	2	1118	2	TC2N	14	92268677	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	56076274	92268677	15080863	52	59862										
CATSPER2	0	genome.wustl.edu	37	chr15	43940189	43940189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gctcaatgagagagaaagtaTcgatgagacgtgaacgaatg	13	5	1	4			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	43940189	43940189	T	A	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	missense	c.71	p.D24V	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	83	0	0	49	33	40.24	-	-	-	A	43940189	T	A	43940189	3	1	681	1	0	0	0	0	1	0	0	0	2713	1435	50	5	1608	5	CATSPER2	15	43940189	Missense_Mutation	SNP	T	TCGA-D8-A1JC-01A-11D-A13L-09		43940189	58591203	53	59863										
KIF23	0	genome.wustl.edu	37	chr15	69733225	69733225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agcttcctgtatttcggaatGggagcagaaaattcctacgt	10	8	0	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	69733225	69733225	G	C	SNP	KIF23	ENST00000260363	human	ensembl	69_37n	1	known	missense	c.2186	p.W729S	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807	73	0	0	63	23	26.74	-	-	-	C	69733225	G	C	69733225	3	2	681	1	0	0	0	0	1	0	0	0	8343	1357	47	4	2256	4	KIF23	15	69733225	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	25793036	69733225	32798167	54	59864										
MPI	0	genome.wustl.edu	37	chr15	75188521	75188521	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ggaaacaacatggaggacatCtttggggagcttttgctaca	12	7	1	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	75188521	75188521	C	T	SNP	MPI	ENST00000352410	human	ensembl	69_37n	1	known	silent	c.699	p.I233	0.068	pfam_Man6P_Isoase-1,superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase,tigrfam_Man6P_Isoase-1	pfam_Man6P_Isoase-1,superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase,prints_Mannose-6-P_Isomerase,tigrfam_Man6P_Isoase-1	-	no_errors	MPI	HGNC	ENSG00000178802	74	0	0	40	19	32.2	-	-	-	T	75188521	C	T	75188521	2	4	681	1	0	0	0	0	0	0	0	1	9801	903	32	2		2	MPI	15	75188521	Silent	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	5455296	75188521	27342871	55	59865										
GRIN2A	0	genome.wustl.edu	37	chr16	9857878	9857878	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gttgttggaaagcccctcttCattatgcaaggggttccggt	12	9	2	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	9857878	9857878	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.3523	p.E1175K	0.351	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	111	0	0	93	29	23.77	-	-	-	T	9857878	C	T	9857878	3	4	681	1	0	0	0	0	1	0	0	0	6830	835	29	2	875	2	GRIN2A	16	9857878	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		9857878	80496875	56	59866										
DNAH3	0	genome.wustl.edu	37	chr16	20976523	20976523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	caccaccttggccacgcgatCgtacacctccatggccctca	7	19	1	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	20976523	20976523	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.8683	p.D2895N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	69	0	0	34	56	62.22	-	-	-	T	20976523	C	T	20976523	3	4	681	1	0	0	0	0	1	0	0	0	4639	884	31	1	3706	1	DNAH3	16	20976523	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	11118645	20976523	69378230	57	59867										
CD19	0	genome.wustl.edu	37	chr16	28948602	28948605	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aaacccccaggcccagaagaAgaggaaggggagggctatga							TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	28948602	28948605	AGAG	-	DEL	CD19	ENST00000538922	human	ensembl	69_37n	1	known	frame_shift_del	c.1209_1212	p.E404fs	0.993:0.996:0.999:1.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	23	0	0	26	22	45.83	-	-	-	-	28948605	AGAG	-	28948602	7	5	681	1	0	1	0	1	0	0	0	0	3002	69	3	0	1243	0	CD19	16	28948602	Frame_Shift_Del	DEL	AGAG	TCGA-D8-A1JC-01A-11D-A13L-09	7972079	28948602	61406151	58	59868										
MVP	0	genome.wustl.edu	37	chr16	29853120	29853120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	agctaccgcgtgccccacaaCgctgcggtgcaggtgtacga	13	14	0	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	29853120	29853120	C	T	SNP	MVP	ENST00000357402	human	ensembl	69_37n	1	known	silent	c.1395	p.N465	0.079	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	21	0	0	18	11	37.93	-	-	-	T	29853120	C	T	29853120	2	4	681	1	0	0	0	0	0	0	0	1	10068	535	19	1		1	MVP	16	29853120	Silent	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	904518	29853120	60501633	59	59869										
CTCF	0	genome.wustl.edu	37	chr16	67662443	67662443	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tgttctaagtgtgggaaaacAtttacacgtcgggtaagggt	13	5	1	0			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	67662443	67662443	A	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	silent	c.1689	p.T563	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	141	0	0	40	38	48.72	-	-	-	T	67662443	A	T	67662443	2	4	681	1	0	0	0	0	0	0	0	1	4032	204	8	5		5	CTCF	16	67662443	Silent	SNP	A	TCGA-D8-A1JC-01A-11D-A13L-09	37809323	67662443	22692310	60	59870										
MYH13	0	genome.wustl.edu	37	chr17	10265677	10265677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aggtgtttacagacactcacGtagatcatccaggctgcata	9	10	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	10265677	10265677	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	silent	c.348	p.Y116	0.997	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	246	0	0	78	100	56.18	-	-	-	A	10265677	G	A	10265677	2	1	681	1	0	0	0	0	0	0	0	1	10104	1159	40	1		1	MYH13	17	10265677	Silent	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		10265677	70929533	61	59871										
MYH8	0	genome.wustl.edu	37	chr17	10312639	10312639	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gaaaagagactggctagagtCttcattgcagacttctggta	11	7	3	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	10312639	10312639	C	A	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.1854	p.K618N	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	63	0	0	44	11	20	-	-	-	A	10312639	C	A	10312639	3	1	681	1	0	0	0	0	1	0	0	0	10113	912	32	2	4059	2	MYH8	17	10312639	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	46962	10312639	70882571	62	59872										
CD300LG	0	genome.wustl.edu	37	chr17	41939193	41939193	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	aggaaaaggaagccccttccCaggcccctgagggggacgtg	15	12	0	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	41939193	41939193	C	T	SNP	CD300LG	ENST00000317310	human	ensembl	69_37n	1	known	nonsense	c.913	p.Q305*	0.008	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LG	HGNC	ENSG00000161649	29	0	0	30	15	33.33	-	-	-	T	41939193	C	T	41939193	4	4	681	1	0	0	0	0	0	1	0	0	3031	595	21	4	1058	4	CD300LG	17	41939193	Nonsense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	31626554	41939193	39256017	63	59873										
AXIN2	0	genome.wustl.edu	37	chr17	63554225	63554225	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gatctcggtctgcgcctggtCaaacatgatggaatcaatct	10	10	5	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	63554225	63554225	C	G	SNP	AXIN2	ENST00000307078	human	ensembl	69_37n	-1	known	missense	c.514	p.D172H	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN2	HGNC	ENSG00000168646	162	0	0	107	52	32.7	-	-	-	G	63554225	C	G	63554225	3	3	681	1	0	0	0	0	1	0	0	0	1241	826	29	2	2057	2	AXIN2	17	63554225	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	21615032	63554225	17640985	64	59874										
EPOR	0	genome.wustl.edu	37	chr19	11489402	11489402	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gtgggtggtgaagaggccttCaaactcgctctctgggctcg	15	10	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	11489402	11489402	C	G	SNP	EPOR	ENST00000222139	human	ensembl	69_37n	-1	known	missense	c.880	p.E294Q	0.957	pirsf_Erythropoietin_rcpt	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Erythropoietin_rcpt,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266	58	0	0	32	7	17.95	-	-	-	G	11489402	C	G	11489402	3	3	681	1	0	0	0	0	1	0	0	0	5226	835	29	2	654	2	EPOR	19	11489402	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09		11489402	47639581	65	59875										
NCR1	0	genome.wustl.edu	37	chr19	55420647	55420647	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tcggttcatcctggacccgaAgtgatctcgggagagaaggt	14	9	2	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	55420647	55420647	A	G	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	1	known	silent	c.399	p.E133	0.033	smart_Ig_sub	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	44	0	0	38	19	33.33	-	-	-	G	55420647	A	G	55420647	2	3	681	1	0	0	0	0	0	0	0	1	10309	69	3	5		5	NCR1	19	55420647	Silent	SNP	A	TCGA-D8-A1JC-01A-11D-A13L-09	43931245	55420647	3708336	66	59876										
NLGN4X	0	genome.wustl.edu	37	chrX	5811360	5811360	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ctgttttgtgagggtccttaGagtgtttgggattgttggca	15	4	0	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	5811360	5811360	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.2009	p.S670F	0.997	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	189	0	0	95	40	29.63	-	-	-	A	5811360	G	A	5811360	3	1	681	1	0	0	0	0	1	0	0	0	10536	942	33	2	505	2	NLGN4X	23	5811360	Missense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09		5811360	149459200	67	59877										
VSIG4	0	genome.wustl.edu	37	chrX	65247938	65247938	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ggtgcctcagtcttggtcttGagtagctttgaggagtctgc	14	8	4	2			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	65247938	65247938	G	A	SNP	VSIG4	ENST00000427538	human	ensembl	69_37n	-1	known	nonsense	c.490	p.Q164*	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VSIG4	HGNC	ENSG00000155659	185	0	0	80	63	44.06	-	-	-	A	65247938	G	A	65247938	4	1	681	1	0	0	0	0	0	1	0	0	17322	1277	45	2	512	2	VSIG4	23	65247938	Nonsense_Mutation	SNP	G	TCGA-D8-A1JC-01A-11D-A13L-09	59436578	65247938	90022622	68	59878										
KIAA1210	0	genome.wustl.edu	37	chrX	118215410	118215410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	tggctgggagagttgaagatCgtttggtttctttttccatg	13	5	1	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	118215410	118215410	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.5012	p.R1671Q	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	177	0	0	92	85	48.02	-	-	-	T	118215410	C	T	118215410	3	4	681	1	0	0	0	0	1	0	0	0	8266	884	31	1	121	1	KIAA1210	23	118215410	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	52967472	118215410	37055150	69	59879										
HCFC1	0	genome.wustl.edu	37	chrX	153219201	153219201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	gctctccacctctccctgatCgctggcagcaggtggggggt	14	14	2	1			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	153219201	153219201	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.4354	p.D1452N	0.969	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	33	0	0	21	12	36.36	-	-	-	T	153219201	C	T	153219201	3	4	681	1	0	0	0	0	1	0	0	0	7042	884	31	1	1789	1	HCFC1	23	153219201	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	35003791	153219201	2051359	70	59880										
F8	0	genome.wustl.edu	37	chrX	154124399	154124399	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.295774647887324	21	0.000595244360186258	2.41875	4.03125	1.77375	1	1	12	ataagtctgccacttcttccCatcaagactatacatgatga	5	11	3	3			TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	154124399	154124399	C	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.6382	p.G2128W	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	68	0	0	47	23	32.86	-	-	-	A	154124399	C	A	154124399	3	1	681	1	0	0	0	0	1	0	0	0	5387	594	21	4	721	4	F8	23	154124399	Missense_Mutation	SNP	C	TCGA-D8-A1JC-01A-11D-A13L-09	905198	154124399	1146161	71	59881										
NPHP4	0	genome.wustl.edu	37	chr1	5940238	5940238	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctggctccatcgtttgagatGacccgagatctggacggtgg	14	10	1	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	5940238	5940238	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	silent	c.2547	p.V849	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	52	0	0	27	14	34.15	-	-	-	A	5940238	G	A	5940238	2	1	682	1	0	0	0	0	0	0	0	1	10653	1277	45	2		2	NPHP4	1	5940238	Silent	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		5940238	243310383	1	59882										
ARID1A	0	genome.wustl.edu	37	chr1	27106230	27106230	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tttggcattagcccagcacaGagccaccggaacatcaagat	9	12	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	27106230	27106230	G	T	SNP	ARID1A	ENST00000430799	human	ensembl	69_37n	1	novel	nonsense	c.2530	p.E844*	1.000	NULL	pfam_DUF3518,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARID1A	HGNC	ENSG00000117713	69	0	0	54	14	20.59	-	-	-	T	27106230	G	T	27106230	4	4	682	1	0	0	0	0	0	1	0	0	915	933	33	2	5919	2	ARID1A	1	27106230	Nonsense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	21165992	27106230	222144391	2	59883										
NFYC	0	genome.wustl.edu	37	chr1	41236337	41236337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccatagggagctgcatgcccCtctcccagggatgacctcac	10	16	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	41236337	41236337	C	T	SNP	NFYC	ENST00000308733	human	ensembl	69_37n	1	known	missense	c.1214	p.P405L	0.996	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136	35	0	0	36	13	26.53	-	-	-	T	41236337	C	T	41236337	3	4	682	1	0	0	0	0	1	0	0	0	10463	696	24	4		4	NFYC	1	41236337	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	14130107	41236337	208014284	3	59884										
PKN2	0	genome.wustl.edu	37	chr1	89294223	89294223	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctcctgaatttcttgccccaGaagtattaacagaaacttct	5	11	2	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	89294223	89294223	G	C	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	1	known	missense	c.2479	p.E827Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	104	0	0	86	10	10.42	-	-	-	C	89294223	G	C	89294223	3	2	682	1	0	0	0	0	1	0	0	0	12054	943	33	2	2553	2	PKN2	1	89294223	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	48057886	89294223	159956398	4	59885										
ABL2	0	genome.wustl.edu	37	chr1	179090960	179090960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tgtggagtgatggtgtacaaGctctgccaaggtgctgaagc	15	7	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	179090960	179090960	G	A	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.730	p.L244F	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	103	0	0	77	20	20.62	-	-	-	A	179090960	G	A	179090960	3	1	682	1	0	0	0	0	1	0	0	0	93	971	34	4	2895	4	ABL2	1	179090960	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	89796737	179090960	70159661	5	59886										
IKBKE	0	genome.wustl.edu	37	chr1	206658614	206658614	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctgaaccgggagctggtgaaGagccgggatcaggtacatga	16	8	1	4			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	206658614	206658614	G	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	missense	c.1587	p.K529N	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	41	0	0	65	11	14.47	-	-	-	T	206658614	G	T	206658614	3	4	682	1	0	0	0	0	1	0	0	0	7666	933	33	2	1637	2	IKBKE	1	206658614	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	27567654	206658614	42592007	6	59887										
RAB4A	0	genome.wustl.edu	37	chr1	229434758	229434758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gaaacaagtgcgctcacaggGgagaatgtagaagaggcttt	14	6	1	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	229434758	229434758	G	A	SNP	RAB4A	ENST00000366690	human	ensembl	69_37n	1	known	silent	c.480	p.G160	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4A	HGNC	ENSG00000168118	103	0	0	132	52	28.26	-	-	-	A	229434758	G	A	229434758	2	1	682	1	0	0	0	0	0	0	0	1	13029	1219	43	4		4	RAB4A	1	229434758	Silent	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	22776144	229434758	19815863	7	59888										
SMEK2	0	genome.wustl.edu	37	chr2	55825928	55825928	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cagtgttttctaggttctcgCaagcttggaacagctgcaat	10	9	2	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	55825928	55825928	C	G	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	missense	c.545	p.C182S	1.000	pfam_DUF625,superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	85	0	0	59	12	16.9	-	-	-	G	55825928	C	G	55825928	3	3	682	1	0	0	0	0	1	0	0	0	14883	710	25	4	2060	4	SMEK2	2	55825928	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		55825928	187373445	8	59889										
CAPG	0	genome.wustl.edu	37	chr2	85628923	85628923	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cttacctatccacaggtgcaGatgggaaacctcttctgggc	10	12	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	85628923	85628923	G	C	SNP	CAPG	ENST00000263867	human	ensembl	69_37n	-1	known	missense	c.181	p.L61V	1.000	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	-	no_errors	CAPG	HGNC	ENSG00000042493	66	0	0	30	11	26.83	-	-	-	C	85628923	G	C	85628923	3	2	682	1	0	0	0	0	1	0	0	0	2646	933	33	2	897	2	CAPG	2	85628923	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	29802995	85628923	157570450	9	59890										
AFF3	0	genome.wustl.edu	37	chr2	100199290	100199290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccgccgtgaggctgcagctgGctgtcggccttaggcttttt	14	12	0	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	100199290	100199290	G	T	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.2838	p.S946R	0.583	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	126	0	0	127	22	14.77	-	-	-	T	100199290	G	T	100199290	3	4	682	1	0	0	0	0	1	0	0	0	358	1194	42	4	953	4	AFF3	2	100199290	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	14570367	100199290	143000083	10	59891										
ABCB11	0	genome.wustl.edu	37	chr2	169791842	169791842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctgaatggctgtcttgaaggGcttctccagctcagtctcaa	10	11	4	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	169791842	169791842	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.2908	p.P970S	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	81	0	0	84	15	15.15	-	-	-	A	169791842	G	A	169791842	3	1	682	1	0	0	0	0	1	0	0	0	42	1203	42	4	1081	4	ABCB11	2	169791842	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	69592552	169791842	73407531	11	59892										
COL6A3	0	genome.wustl.edu	37	chr2	238283417	238283417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccagggcggccccggtgttgGgggtcggccctcccagcagg	18	15	0	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	238283417	238283417	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.3317	p.P1106L	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	34	0	0	30	6	16.67	-	-	-	A	238283417	G	A	238283417	3	1	682	1	0	0	0	0	1	0	0	0	3731	1232	43	4	6411	4	COL6A3	2	238283417	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	68491575	238283417	4915956	12	59893										
KIF1A	0	genome.wustl.edu	37	chr2	241710387	241710387	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	agccccaggtggtgccctcaCcttcagtctttcaatggcct	9	15	4	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	241710387	241710387	C	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	splice_site	c.1341+1	e14+1	1.000	-	-	-	no_errors	KIF1A	HGNC	ENSG00000130294	44	0	0	44	6	12	-	-	-	A	241710387	C	A	241710387	5	1	682	1	0	0	0	0	0	0	1	0	8335	521	18	4	3893	4	KIF1A	2	241710387	Splice_Site	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	3426970	241710387	1488986	13	59894										
IL5RA	0	genome.wustl.edu	37	chr3	3144387	3144387	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cttttggagcgtttattttcActtgatattctagattaaca	6	6	2	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	3144387	3144387	A	T	SNP	IL5RA	ENST00000256452	human	ensembl	69_37n	-1	known	missense	c.200	p.V67E	1.000	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181	74	0	0	63	13	17.11	-	-	-	T	3144387	A	T	3144387	3	4	682	1	0	0	0	0	1	0	0	0	7754	159	6	5	1124	5	IL5RA	3	3144387	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09		3144387	194878043	14	59895										
XCR1	0	genome.wustl.edu	37	chr3	46063167	46063167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cccagcacccagccccagtgGtatggggagatccacacagg	12	15	0	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	46063167	46063167	G	A	SNP	XCR1	ENST00000309285	human	ensembl	69_37n	-1	known	silent	c.273	p.Y91	0.085	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	113	0	0	77	43	35.83	-	-	-	A	46063167	G	A	46063167	2	1	682	1	0	0	0	0	0	0	0	1	17522	1256	44	4		4	XCR1	3	46063167	Silent	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	42918780	46063167	151959263	15	59896										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0	71	22	23.66	-	-	-	A	178936091	G	A	178936091	3	1	682	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	132872924	178936091	19086339	16	59897										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	88	0	0	68	26	27.66	-	-	-	A	178938934	G	A	178938934	3	1	682	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	2843	178938934	19083496	17	59898										
PIK3CA	0	genome.wustl.edu	37	chr3	178951957	178951957	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ttcataaatcttttctcaatGatgcttggctctggaatgcc	7	9	4	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178951957	178951957	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3012	p.M1004I	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	66	0	0	87	33	27.5	-	-	-	A	178951957	G	A	178951957	3	1	682	1	0	0	0	0	1	0	0	0	11987	1290	45	2	3090	2	PIK3CA	3	178951957	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	13023	178951957	19070473	18	59899										
NPFFR2	0	genome.wustl.edu	37	chr4	73013422	73013422	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ttgtccaggaatctacatttCaaaaccctcatggggaaacc	7	11	3	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	73013422	73013422	C	G	SNP	NPFFR2	ENST00000308744	human	ensembl	69_37n	1	known	missense	c.1462	p.Q488E	0.012	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	41	0	0	31	6	16.22	-	-	-	G	73013422	C	G	73013422	3	3	682	1	0	0	0	0	1	0	0	0	10650	827	29	2	1482	2	NPFFR2	4	73013422	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		73013422	118140854	19	59900										
GPRIN3	0	genome.wustl.edu	37	chr4	90169141	90169141	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tgcaaatggttctggatcgcGattcccagggactctgcgtc	12	11	2	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	90169141	90169141	G	T	SNP	GPRIN3	ENST00000333209	human	ensembl	69_37n	-1	known	silent	c.2121	p.I707	0.705	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	52	0	0	49	14	22.22	-	-	-	T	90169141	G	T	90169141	2	4	682	1	0	0	0	0	0	0	0	1	6782	1048	37	3		3	GPRIN3	4	90169141	Silent	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	17155719	90169141	100985135	20	59901										
RAP1GDS1	0	genome.wustl.edu	37	chr4	99358139	99358139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	taaacttgtacagattttacAtagactgctagcagatgaga	8	6	0	4			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	99358139	99358139	A	G	SNP	RAP1GDS1	ENST00000339360	human	ensembl	69_37n	1	known	missense	c.1619	p.H540R	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698	117	0	0	103	28	21.37	-	-	-	G	99358139	A	G	99358139	3	3	682	1	0	0	0	0	1	0	0	0	13122	217	8	5	1673	5	RAP1GDS1	4	99358139	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	9188998	99358139	91796137	21	59902										
GALNT7	0	genome.wustl.edu	37	chr4	174169552	174169552	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	catggtggcaagtgacatgaTctcactggaccgcagcgtca	12	11	2	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	174169552	174169552	T	A	SNP	GALNT7	ENST00000265000	human	ensembl	69_37n	1	known	missense	c.548	p.I183N	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586	42	0	0	51	10	16.39	-	-	-	A	174169552	T	A	174169552	3	1	682	1	0	0	0	0	1	0	0	0	6268	1435	50	5	554	5	GALNT7	4	174169552	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	74811413	174169552	16984724	22	59903										
SLC36A2	0	genome.wustl.edu	37	chr5	150704868	150704868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	agcagttaggcaggttaaggCttatgctggccttgatgtca	13	7	1	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	5	150704868	150704868	C	T	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	missense	c.989	p.S330N	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	72	0	0	52	12	18.75	-	-	-	T	150704868	C	T	150704868	3	4	682	1	0	0	0	0	1	0	0	0	14683	797	28	4	474	4	SLC36A2	5	150704868	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		150704868	30210392	23	59904										
SLC34A1	0	genome.wustl.edu	37	chr5	176815139	176815139	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	atccatggtggccgtgatgcTcctgacctgctcaagatcat	10	12	2	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	5	176815139	176815139	T	A	SNP	SLC34A1	ENST00000324417	human	ensembl	69_37n	1	known	silent	c.789	p.A263	0.998	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	66	0	0	34	16	32	-	-	-	A	176815139	T	A	176815139	2	1	682	1	0	0	0	0	0	0	0	1	14656	1538	54	5		5	SLC34A1	5	176815139	Silent	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	26110271	176815139	4100121	24	59905										
CYP21A2	0	genome.wustl.edu	37	chr6	32007206	32007206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cctcacctgcagcatcatctGttacctcaccttcggagaca	6	16	4	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	32007206	32007206	G	A	SNP	CYP21A2	ENST00000418967	human	ensembl	69_37n	1	known	missense	c.521	p.C174Y	0.603	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852	73	0	0	53	15	22.06	-	-	-	A	32007206	G	A	32007206	3	1	682	1	0	0	0	0	1	0	0	0	4184	1377	48	4	2056	4	CYP21A2	6	32007206	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		32007206	139107861	25	59906										
BET3L	0	genome.wustl.edu	37	chr6	116821736	116821736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctcttccacaaactccaccaGgggattcttctctagaatca	5	14	4	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	116821736	116821736	G	T	SNP	BET3L	ENST00000368602	human	ensembl	69_37n	-1	known	missense	c.334	p.L112M	0.963	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	-	no_errors	BET3L	HGNC	ENSG00000173626	42	0	0	28	9	24.32	-	-	-	T	116821736	G	T	116821736	3	4	682	1	0	0	0	0	1	0	0	0	1414	991	35	4	219	4	BET3L	6	116821736	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	84814530	116821736	54293331	26	59907										
SYNE1	0	genome.wustl.edu	37	chr6	152671436	152671436	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cactgttgtagtcttcatggTctttgactttcgcctccaga	8	11	3	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	152671436	152671436	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.11768	p.D3923A	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	69	0	0	53	15	22.06	-	-	-	G	152671436	T	G	152671436	3	3	682	1	0	0	0	0	1	0	0	0	15537	1667	58	5	14998	5	SYNE1	6	152671436	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	35849700	152671436	18443631	27	59908										
DNAH11	0	genome.wustl.edu	37	chr7	21640549	21640549	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ttgagcaattcaaagaacagGcaaggaaaacccttagcatt	8	8	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	21640549	21640549	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	splice_site	c.3255+1	e16+1	1.000	-	-	-	no_errors	DNAH11	HGNC	ENSG00000105877	99	0	0	44	14	24.14	-	-	-	A	21640549	G	A	21640549	5	1	682	1	0	0	0	0	0	0	1	0	4635	1217	42	4	3318	4	DNAH11	7	21640549	Splice_Site	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		21640549	137498114	28	59909										
PKD1L1	0	genome.wustl.edu	37	chr7	47925506	47925506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ggcaggttggccaagggtcaCgggtgaaggttcccgtgaga	18	8	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	47925506	47925506	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.2983	p.V995M	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	67	0	0	37	12	24.49	-	-	-	T	47925506	C	T	47925506	3	4	682	1	0	0	0	0	1	0	0	0	12038	536	19	1	5726	1	PKD1L1	7	47925506	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	26284957	47925506	111213157	29	59910										
CDK14	0	genome.wustl.edu	37	chr7	90585061	90585061	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cacacatactccaacgaagtGgttaccttgtggtacagacc	8	12	0	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	90585061	90585061	G	C	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	1	known	silent	c.876	p.V292	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	58	0	0	50	36	41.86	-	-	-	C	90585061	G	C	90585061	2	2	682	1	0	0	0	0	0	0	0	1	3159	1335	47	4		4	CDK14	7	90585061	Silent	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	42659555	90585061	68553602	30	59911										
HGSNAT	0	genome.wustl.edu	37	chr8	43046629	43046629	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccactcaggagaggagctgcCtttctcttcgagacatcacg	10	13	3	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	8	43046629	43046629	C	G	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	missense	c.1225	p.L409V	0.001	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	92	0	0	64	39	37.86	-	-	-	G	43046629	C	G	43046629	3	3	682	1	0	0	0	0	1	0	0	0	7139	681	24	4	1187	4	HGSNAT	8	43046629	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		43046629	103317393	31	59912										
VAV2	0	genome.wustl.edu	37	chr9	136649470	136649470	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tttgcaggctttgcagttggTggtcttgtcaaacgtgtaca	12	7	2	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	9	136649470	136649470	T	G	SNP	VAV2	ENST00000371850	human	ensembl	69_37n	-1	known	missense	c.1603	p.T535P	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293	432	1	0.23	360	43	10.67	-	-	-	G	136649470	T	G	136649470	3	3	682	1	0	0	0	0	1	0	0	0	17229	1696	59	5	1085	5	VAV2	9	136649470	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09		136649470	4563961	32	59913										
STAM	0	genome.wustl.edu	37	chr10	17686365	17686365	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctttttgccaccaatcccttCgatcaggatgttggtaagtg	9	10	1	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	10	17686365	17686365	C	T	SNP	STAM	ENST00000377524	human	ensembl	69_37n	1	known	silent	c.27	p.F9	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	97	0	0	68	45	39.82	-	-	-	T	17686365	C	T	17686365	2	4	682	1	0	0	0	0	0	0	0	1	15339	883	31	1		1	STAM	10	17686365	Silent	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		17686365	117848382	33	59914										
NEBL	0	genome.wustl.edu	37	chr10	21177025	21177025	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	aacactttagaaaaaccctaCctcactctggagctgtgtaa	6	11	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	10	21177025	21177025	C	A	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	splice_site	c.369+1	e4+1	1.000	-	-	-	no_errors	NEBL	HGNC	ENSG00000078114	105	0	0	94	14	12.96	-	-	-	A	21177025	C	A	21177025	5	1	682	1	0	0	0	0	0	0	1	0	10375	521	18	4	2774	4	NEBL	10	21177025	Splice_Site	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	3490660	21177025	114357722	34	59915										
PDE3B	0	genome.wustl.edu	37	chr11	14854289	14854289	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ttatgtataccttatttcaaGacactggtttattggaaata	6	5	1	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	14854289	14854289	G	C	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	missense	c.2116	p.D706H	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	40	0	0	55	11	16.67	-	-	-	C	14854289	G	C	14854289	3	2	682	1	0	0	0	0	1	0	0	0	11711	942	33	2	2154	2	PDE3B	11	14854289	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		14854289	120152227	35	59916										
TSG101	0	genome.wustl.edu	37	chr11	18503243	18503243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cccaagtaaaagatagtgtcTtcaatagcgttttcttctgc	7	9	4	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	18503243	18503243	T	C	SNP	TSG101	ENST00000584526	human	ensembl	69_37n	-1	known	missense	c.76	p.R26G	1.000	pfam_Steadiness_box	pfam_Steadiness_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSG101	HGNC	ENSG00000074319	97	0	0	114	16	12.31	-	-	-	C	18503243	T	C	18503243	3	2	682	1	0	0	0	0	1	0	0	0	16712	1606	56	5	163	5	TSG101	11	18503243	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	3648954	18503243	116503273	36	59917										
ZFP91	0	genome.wustl.edu	37	chr11	58384907	58384907	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	atatcttgggcactaacccaGagtccctgacgcagccttca	8	14	2	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	58384907	58384907	G	A	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	1	known	missense	c.1441	p.E481K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	70	0	0	44	5	10	-	-	-	A	58384907	G	A	58384907	3	1	682	1	0	0	0	0	1	0	0	0	17751	943	33	2	1483	2	ZFP91	11	58384907	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	39881664	58384907	76621609	37	59918										
TRAPPC4	0	genome.wustl.edu	37	chr11	118895746	118895746	+	Frame_Shift_Del	DEL	G	G	-													0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gtgctccaactgtagtgcttGgcaatggtgctgaagggcag							TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	118895746	118895746	G	-	DEL	TRAPPC4	ENST00000533058	human	ensembl	69_37n	1	putative	frame_shift_del	c.761	p.W254fs	1.000	NULL	pfam_Sybindin,pfam_Sedlin,superfamily_Longin-like_dom	-	no_errors	TRAPPC4	HGNC	ENSG00000196655	25	0	0	24	5	17.24	-	-	-	-	118895746	G	-	118895746	7	5	682	1	0	1	0	1	0	0	0	0	16557	1335	47	0		0	TRAPPC4	11	118895746	Frame_Shift_Del	DEL	G	TCGA-D8-A1JD-01A-11D-A13L-09	60510839	118895746	16110770	38	59919										
ABCG4	0	genome.wustl.edu	37	chr11	119029289	119029289	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cctgacccacctacggttcaTgtcccacgtggttattggcg	10	14	1	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	119029289	119029289	T	G	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.1190	p.M397R	0.998	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	88	0	0	65	11	14.47	-	-	-	G	119029289	T	G	119029289	3	3	682	1	0	0	0	0	1	0	0	0	70	1464	51	5	1228	5	ABCG4	11	119029289	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	133543	119029289	15977227	39	59920										
ACSM4	0	genome.wustl.edu	37	chr12	7480932	7480932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	aatcactgggaaaatcaaacGcaacgttttaagagaccaag	8	8	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	7480932	7480932	G	A	SNP	ACSM4	ENST00000399422	human	ensembl	69_37n	1	novel	missense	c.1706	p.R569H	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009	72	0	0	67	20	22.99	-	-	-	A	7480932	G	A	7480932	3	1	682	1	0	0	0	0	1	0	0	0	186	1087	38	1	1756	1	ACSM4	12	7480932	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		7480932	126370963	40	59921										
IQCD	0	genome.wustl.edu	37	chr12	113633598	113633598	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctcccgctcttcccggatctGcgcaaactctcccaccagca	6	20	3	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	113633598	113633598	G	A	SNP	IQCD	ENST00000416617	human	ensembl	69_37n	-1	known	nonsense	c.1132	p.Q378*	0.986	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578	87	0	0	63	15	18.99	-	-	-	A	113633598	G	A	113633598	4	1	682	1	0	0	0	0	0	1	0	0	7859	1328	46	4	221	4	IQCD	12	113633598	Nonsense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	106152666	113633598	20218297	41	59922										
SDSL	0	genome.wustl.edu	37	chr12	113875830	113875830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gtaatcgtgtgtggaggcaaCaacatcaacagccgagagct	12	9	1	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	113875830	113875830	C	A	SNP	SDSL	ENST00000345635	human	ensembl	69_37n	1	known	missense	c.936	p.N312K	0.990	superfamily_PyrdxlP-dep_enz_bsu	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	SDSL	HGNC	ENSG00000139410	58	0	0	21	9	30	-	-	-	A	113875830	C	A	113875830	3	1	682	1	0	0	0	0	1	0	0	0	14064	477	17	4	962	4	SDSL	12	113875830	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	242232	113875830	19976065	42	59923										
B3GALTL	0	genome.wustl.edu	37	chr13	31891805	31891805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ggcactggtggctacagctaCatcacgggaggaggagggta	17	8	1	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	13	31891805	31891805	C	T	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	silent	c.1167	p.Y389	0.998	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	65	0	0	45	9	16.67	-	-	-	T	31891805	C	T	31891805	2	4	682	1	0	0	0	0	0	0	0	1	1256	489	17	4		4	B3GALTL	13	31891805	Silent	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		31891805	83278073	43	59924										
TLN2	0	genome.wustl.edu	37	chr15	63097800	63097800	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctctgtttctgacttccaggTgttccagtcaaaagacgtac	8	11	3	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	63097800	63097800	T	G	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.6479	p.V2160G	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	35	0	0	31	5	13.89	-	-	-	G	63097800	T	G	63097800	3	3	682	1	0	0	0	0	1	0	0	0	16043	1710	59	5	6669	5	TLN2	15	63097800	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09		63097800	39433592	44	59925										
CILP	0	genome.wustl.edu	37	chr15	65494258	65494258	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	cttcacagccccagcatcacTctgggccttgcaaaagtact	7	15	3	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	65494258	65494258	T	C	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.1138	p.S380G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	46	0	0	56	10	15.15	-	-	-	C	65494258	T	C	65494258	3	2	682	1	0	0	0	0	1	0	0	0	3458	1551	54	5	2424	5	CILP	15	65494258	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	2396458	65494258	37037134	45	59926										
CSPG4	0	genome.wustl.edu	37	chr15	75977998	75977998	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccggcactcggtgggctcttCactgagaatacgatgtctgc	12	12	3	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	75977998	75977998	C	A	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.3834	p.V1278	0.886	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	17	0	0	13	7	35	-	-	-	A	75977998	C	A	75977998	2	1	682	1	0	0	0	0	0	0	0	1	3992	813	29	2		2	CSPG4	15	75977998	Silent	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	10483740	75977998	26553394	46	59927										
KIAA1199	0	genome.wustl.edu	37	chr15	81212548	81212548	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ctccttgtcaagtctggaacCctcctcccctcggaccgtga	8	17	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	81212548	81212548	C	A	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	silent	c.1911	p.T637	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	49	0	0	53	15	22.06	-	-	-	A	81212548	C	A	81212548	2	1	682	1	0	0	0	0	0	0	0	1	8265	610	22	4		4	KIAA1199	15	81212548	Silent	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	5234550	81212548	21318844	47	59928										
WDR93	0	genome.wustl.edu	37	chr15	90270408	90270408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gcaccacattcaaaagccccCtggaagtctttgcaaagatc	7	13	2	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	90270408	90270408	C	A	SNP	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	missense	c.901	p.L301M	0.976	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	39	0	0	31	12	27.27	-	-	-	A	90270408	C	A	90270408	3	1	682	1	0	0	0	0	1	0	0	0	17437	680	24	4	931	4	WDR93	15	90270408	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	9057860	90270408	12260984	48	59929										
KIF22	0	genome.wustl.edu	37	chr16	29815348	29815348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	aggcagcatccccaaatgccGagatccacatcctgaagaat	8	13	0	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	29815348	29815348	G	A	SNP	KIF22	ENST00000160827	human	ensembl	69_37n	1	known	missense	c.1639	p.E547K	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	55	0	0	44	12	21.43	-	-	-	A	29815348	G	A	29815348	3	1	682	1	0	0	0	0	1	0	0	0	8342	1059	37	1	1681	1	KIF22	16	29815348	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		29815348	60539405	49	59930										
PMFBP1	0	genome.wustl.edu	37	chr16	72157496	72157496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tcataatctgatcattccctCggtagagcctacaggtgtct	8	11	4	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	72157496	72157496	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.2657	p.R886Q	0.946	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	107	0	0	51	15	22.73	-	-	-	T	72157496	C	T	72157496	3	4	682	1	0	0	0	0	1	0	0	0	12208	884	31	1	457	1	PMFBP1	16	72157496	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	42342148	72157496	18197257	50	59931										
BCAR1	0	genome.wustl.edu	37	chr16	75267803	75267803	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gctgcccttttccagcagctCcttctgggtcttctcaaact	7	15	3	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	75267803	75267803	C	A	SNP	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	nonsense	c.2179	p.E727*	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	26	0	0	24	10	29.41	-	-	-	A	75267803	C	A	75267803	4	1	682	1	0	0	0	0	0	1	0	0	1352	864	30	2	579	2	BCAR1	16	75267803	Nonsense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	3110307	75267803	15086950	51	59932										
TMEM170A	0	genome.wustl.edu	37	chr16	75485730	75485730	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gcccacaggaatacaccataCcacatctctatgagggaaga	8	12	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	75485730	75485730	C	T	SNP	TMEM170A	ENST00000561878	human	ensembl	69_37n	-1	known	nonsense	c.141	p.W47*	1.000	pfam_Transmembrane_pr_170	pfam_Transmembrane_pr_170	-	no_errors	TMEM170A	HGNC	ENSG00000166822	59	0	0	25	29	53.7	-	-	-	T	75485730	C	T	75485730	4	4	682	1	0	0	0	0	0	1	0	0	16181	508	18	4	301	4	TMEM170A	16	75485730	Nonsense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	217927	75485730	14869023	52	59933										
CDYL2	0	genome.wustl.edu	37	chr16	80667011	80667011	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	aacgatgtctcgaaaccgacAgttgctttcattctggcgga	10	10	3	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	80667011	80667011	A	C	SNP	CDYL2	ENST00000299564	human	ensembl	69_37n	-1	known	missense	c.739	p.C247G	1.000	NULL	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	64	0	0	16	22	57.89	-	-	-	C	80667011	A	C	80667011	3	2	682	1	0	0	0	0	1	0	0	0	3215	188	7	5	801	5	CDYL2	16	80667011	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	5181281	80667011	9687742	53	59934										
SMYD4	0	genome.wustl.edu	37	chr17	1707930	1707930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tgatactcacctcatactgaCccaggtggaagagggctgcc	11	12	2	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	1707930	1707930	C	T	SNP	SMYD4	ENST00000305513	human	ensembl	69_37n	-1	known	missense	c.359	p.G120D	0.999	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532	59	0	0	50	8	13.79	-	-	-	T	1707930	C	T	1707930	3	4	682	1	0	0	0	0	1	0	0	0	14913	507	18	4	2087	4	SMYD4	17	1707930	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09		1707930	79487280	54	59935										
NCOR1	0	genome.wustl.edu	37	chr17	15961915	15961915	+	Splice_Site	DEL	T	T	-													0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tcatacctgtgagaagatacTttaagaaaagaaaatcttat							TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	15961915	15961915	T	-	DEL	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	splice_site_del	c.5882-2	e37-2	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027	60	0	0	31	13	29.55	-	-	-	-	15961915	T	-	15961915	8	5	682	1	0	1	0	1	0	0	1	0	10307	1623	56	0	1478	0	NCOR1	17	15961915	Splice_Site	DEL	T	TCGA-D8-A1JD-01A-11D-A13L-09	14253985	15961915	65233295	55	59936										
ZNF624	0	genome.wustl.edu	37	chr17	16526967	16526967	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	catttgtagggtttctcaccAttgtgagtttcctgatgtct	9	8	2	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	16526967	16526967	A	T	SNP	ZNF624	ENST00000311331	human	ensembl	69_37n	-1	known	missense	c.1233	p.N411K	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566	103	0	0	122	20	14.08	-	-	-	T	16526967	A	T	16526967	3	4	682	1	0	0	0	0	1	0	0	0	18144	214	8	5	1368	5	ZNF624	17	16526967	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	565052	16526967	64668243	56	59937										
SREBF1	0	genome.wustl.edu	37	chr17	17721600	17721600	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tgtggacagcagtgcgcagaCttaggttctcctgcttgagt	13	9	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	17721600	17721600	C	G	SNP	SREBF1	ENST00000355815	human	ensembl	69_37n	-1	known	missense	c.1247	p.S416T	0.996	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF1	HGNC	ENSG00000072310	65	0	0	56	28	33.33	-	-	-	G	17721600	C	G	17721600	3	3	682	1	0	0	0	0	1	0	0	0	15232	565	20	4	2342	4	SREBF1	17	17721600	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	1194633	17721600	63473610	57	59938										
SLFN13	0	genome.wustl.edu	37	chr17	33768644	33768644	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	attctgtgtgcctcacagtgAaacacattcctgatcttctc	6	12	4	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	33768644	33768644	A	C	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	missense	c.1860	p.F620L	0.850	pfam_DUF2075	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	57	0	0	30	7	18.92	-	-	-	C	33768644	A	C	33768644	3	2	682	1	0	0	0	0	1	0	0	0	14825	243	9	5	841	5	SLFN13	17	33768644	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	16047044	33768644	47426566	58	59939										
C17orf104	0	genome.wustl.edu	37	chr17	42744064	42744064	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	agctaagacaacattccaagAatatccacttatcaaaaact	3	10	1	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	42744064	42744064	A	C	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	1	known	missense	c.785	p.E262A	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	41	0	0	27	7	20.59	-	-	-	C	42744064	A	C	42744064	3	2	682	1	0	0	0	0	1	0	0	0	1864	246	9	5	803	5	C17orf104	17	42744064	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	8975420	42744064	38451146	59	59940										
PLEKHM1	0	genome.wustl.edu	37	chr17	43516865	43516865	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gactgtggtgtcaaactcaaAggggaagatgatgtcgtggt	15	5	2	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	43516865	43516865	A	C	SNP	PLEKHM1	ENST00000430334	human	ensembl	69_37n	-1	known	missense	c.3037	p.F1013V	1.000	superfamily_Znf_FYVE_PHD,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	90	0	0	85	17	16.67	-	-	-	C	43516865	A	C	43516865	3	2	682	1	0	0	0	0	1	0	0	0	12154	72	3	5	141	5	PLEKHM1	17	43516865	Missense_Mutation	SNP	A	TCGA-D8-A1JD-01A-11D-A13L-09	772801	43516865	37678345	60	59941										
GIP	0	genome.wustl.edu	37	chr17	47044526	47044526	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tacctgaagtgaccctctttCttctctcctagtcccactgc	5	16	3	2			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	47044526	47044526	C	G	SNP	GIP	ENST00000357424	human	ensembl	69_37n	-1	known	missense	c.69	p.K23N	0.081	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	GIP	HGNC	ENSG00000159224	70	0	0	67	13	16.05	-	-	-	G	47044526	C	G	47044526	3	3	682	1	0	0	0	0	1	0	0	0	6443	912	32	2	412	2	GIP	17	47044526	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	3527661	47044526	34150684	61	59942										
SAMD14	0	genome.wustl.edu	37	chr17	48191628	48191628	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gggcccactggggatcttggGgctgctgctggggggcgtgg	22	9	1	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	48191628	48191628	G	T	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.949	p.P317T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	49	0	0	35	4	10.26	-	-	-	T	48191628	G	T	48191628	3	4	682	1	0	0	0	0	1	0	0	0	13905	1232	43	4	400	4	SAMD14	17	48191628	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	1147102	48191628	33003582	62	59943										
PALM	0	genome.wustl.edu	37	chr19	731114	731114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ggttggagaaggaaattgagGtgctggagcgtggagactcc	18	5	0	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	731114	731114	G	T	SNP	PALM	ENST00000338448	human	ensembl	69_37n	1	known	missense	c.289	p.V97L	0.070	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864	16	0	0	10	5	31.25	-	-	-	T	731114	G	T	731114	3	4	682	1	0	0	0	0	1	0	0	0	11481	1261	44	4	307	4	PALM	19	731114	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		731114	58397869	63	59944										
PEX11G	0	genome.wustl.edu	37	chr19	7550870	7550870	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ggcgggacactgttcaaccaGaactccaccaaccagctggc	10	15	1	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	7550870	7550870	G	T	SNP	PEX11G	ENST00000221480	human	ensembl	69_37n	-1	known	missense	c.103	p.L35M	0.979	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11G	HGNC	ENSG00000104883	44	0	0	39	5	11.36	-	-	-	T	7550870	G	T	7550870	3	4	682	1	0	0	0	0	1	0	0	0	11813	933	33	2	638	2	PEX11G	19	7550870	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	6819756	7550870	51578113	64	59945										
OR10H4	0	genome.wustl.edu	37	chr19	16060202	16060202	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	atcgctatgtggccatctgcCacccactgcgttacaatgtg	9	13	1	0			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	16060202	16060202	C	A	SNP	OR10H4	ENST00000322107	human	ensembl	69_37n	1	known	missense	c.385	p.H129N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231	298	0	0	249	44	15.02	-	-	-	A	16060202	C	A	16060202	3	1	682	1	0	0	0	0	1	0	0	0	10981	594	21	4	387	4	OR10H4	19	16060202	Missense_Mutation	SNP	C	TCGA-D8-A1JD-01A-11D-A13L-09	8509332	16060202	43068781	65	59946										
ZNF790	0	genome.wustl.edu	37	chr19	37309690	37309690	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	tctgatgtcgagtaagttgtGaaccccagagaaaggctttt	11	7	1	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	37309690	37309690	G	A	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1556	p.S519L	0.024	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	88	0	0	76	9	10.59	-	-	-	A	37309690	G	A	37309690	3	1	682	1	0	0	0	0	1	0	0	0	18255	1294	45	2	358	2	ZNF790	19	37309690	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	21249488	37309690	21819293	66	59947										
ACTN4	0	genome.wustl.edu	37	chr19	39219642	39219642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccctctccttgcagggtgagGccgagttcaaccgcatcatg	11	14	3	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	39219642	39219642	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	missense	c.2425	p.A809T	0.951	pfscan_EF_HAND_2	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	31	0	0	18	9	33.33	-	-	-	A	39219642	G	A	39219642	3	1	682	1	0	0	0	0	1	0	0	0	207	1203	42	4	2503	4	ACTN4	19	39219642	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	1909952	39219642	19909341	67	59948										
STARD8	0	genome.wustl.edu	37	chrX	67937723	67937723	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ttgagagcctgtgtcctgagGatggacaccgcctggcagac	14	11	0	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	67937723	67937723	G	C	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	missense	c.967	p.D323H	0.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	32	0	0	74	10	11.9	-	-	-	C	67937723	G	C	67937723	3	2	682	1	0	0	0	0	1	0	0	0	15354	1174	41	2	989	2	STARD8	23	67937723	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09		67937723	87332837	68	59949										
MED12	0	genome.wustl.edu	37	chrX	70357654	70357654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccatggtgccccccagctacTccagccagccttaccagagc	8	19	0	1			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	70357654	70357654	T	C	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.5914	p.S1972P	1.000	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	77	0	0	38	12	24	-	-	-	C	70357654	T	C	70357654	3	2	682	1	0	0	0	0	1	0	0	0	9499	1551	54	5	6067	5	MED12	23	70357654	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	2419931	70357654	84912906	69	59950										
MAGEE1	0	genome.wustl.edu	37	chrX	75649889	75649890	+	Frame_Shift_Del	DEL	TA	TA	-													0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gaaatgcgggaatatattgtTaaagaatatcgcaaccagtt							TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	75649889	75649890	TA	-	DEL	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	frame_shift_del	c.1566_1567	p.K523fs	0.022:0.119	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	29	0	0	22	5	17.86	-	-	-	-	75649890	TA	-	75649889	7	5	682	1	0	1	0	1	0	0	0	0	9256	1741	61	0	1568	0	MAGEE1	23	75649889	Frame_Shift_Del	DEL	TA	TCGA-D8-A1JD-01A-11D-A13L-09	5292235	75649889	79620671	70	59951										
TAF7L	0	genome.wustl.edu	37	chrX	100530996	100530996	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	ccaagaatttaccttgagtgTcaggttttccactttcatga	7	9	2	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	100530996	100530996	T	A	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.1276	p.T426S	0.448	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	193	0	0	183	26	12.44	-	-	-	A	100530996	T	A	100530996	3	1	682	1	0	0	0	0	1	0	0	0	15625	1667	58	5	124	5	TAF7L	23	100530996	Missense_Mutation	SNP	T	TCGA-D8-A1JD-01A-11D-A13L-09	24881107	100530996	54739564	71	59952										
TAZ	0	genome.wustl.edu	37	chrX	153642519	153642519	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	12	0.044016733208215	2.05982905982906	3.08974358974359	1.66370808678501	0.715987167706469	1	6	gccaggtgctggaaaaagaaGagagaaaggtaagccaggca	15	6	0	3			TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	153642519	153642519	G	A	SNP	TAZ	ENST00000299328	human	ensembl	69_37n	1	known	missense	c.452	p.R151K	0.007	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase,prints_Tafazzin	-	no_errors	TAZ	HGNC	ENSG00000102125	42	0	0	49	11	18.33	-	-	-	A	153642519	G	A	153642519	3	1	682	1	0	0	0	0	1	0	0	0	15688	942	33	2	470	2	TAZ	23	153642519	Missense_Mutation	SNP	G	TCGA-D8-A1JD-01A-11D-A13L-09	53111523	153642519	1628041	72	59953										
CDK11A	0	genome.wustl.edu	37	chr1	1638858	1638858	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	agggcctgacctgcagggccGgcaggtacttgggcagctcc	16	13	0	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	1638858	1638858	G	A	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	missense	c.1235	p.P412L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	43	0	0	50	14	21.88	-	-	-	A	1638858	G	A	1638858	3	1	683	1	0	0	0	0	1	0	0	0	3155	1116	39	1	1147	1	CDK11A	1	1638858	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09		1638858	247611763	1	59954										
C1orf129	0	genome.wustl.edu	37	chr1	170940889	170940889	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ctcctttgtttctccattagAtaagtgttgatgctccatgt	7	9	1	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	170940889	170940889	A	G	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	missense	c.481	p.I161V	0.039	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	101	0	0	169	35	17.16	-	-	-	G	170940889	A	G	170940889	3	3	683	1	0	0	0	0	1	0	0	0	2015	347	12	5	507	5	C1orf129	1	170940889	Missense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09	169302031	170940889	78309732	2	59955										
DHX9	0	genome.wustl.edu	37	chr1	182849707	182849707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	taaactccccattgagcctcGttttggcaaaatgatgataa	7	9	0	3			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	182849707	182849707	G	A	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.2588	p.R863H	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	90	0	0	89	12	11.88	-	-	-	A	182849707	G	A	182849707	3	1	683	1	0	0	0	0	1	0	0	0	4552	1145	40	1	2670	1	DHX9	1	182849707	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09	11908818	182849707	66400914	3	59956										
KIF14	0	genome.wustl.edu	37	chr1	200584501	200584501	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	acgtatatgattttccagagCcagtctgaccataagcaaaa	7	9	1	3			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	200584501	200584501	C	A	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.1349	p.G450V	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	42	0	0	39	20	33.9	-	-	-	A	200584501	C	A	200584501	3	1	683	1	0	0	0	0	1	0	0	0	8328	739	26	4	3709	4	KIF14	1	200584501	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09	17734794	200584501	48666120	4	59957										
GPATCH2	0	genome.wustl.edu	37	chr1	217793197	217793197	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ccttattggtctggttcgttTcctcactttctaaaactact	5	11	3	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	217793197	217793197	T	C	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	missense	c.701	p.E234G	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	72	0	0	154	167	52.02	-	-	-	C	217793197	T	C	217793197	3	2	683	1	0	0	0	0	1	0	0	0	6641	1783	62	5	921	5	GPATCH2	1	217793197	Missense_Mutation	SNP	T	TCGA-D8-A1JE-01A-11D-A13L-09	17208696	217793197	31457424	5	59958										
DNMT3A	0	genome.wustl.edu	37	chr2	25457218	25457218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ctggcacgctccatgaccggCccagcagtctctgcctcgcc	10	19	1	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	25457218	25457218	C	T	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.2669	p.G890D	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	36	0	0	39	24	38.1	-	-	-	T	25457218	C	T	25457218	3	4	683	1	0	0	0	0	1	0	0	0	4711	739	26	4	73	4	DNMT3A	2	25457218	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		25457218	217742155	6	59959										
IGFBP2	0	genome.wustl.edu	37	chr2	217525400	217525400	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	caagtcgggtatgaaggagcTggccgtgttccgggagaagg	18	7	0	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	217525400	217525400	T	C	SNP	IGFBP2	ENST00000233809	human	ensembl	69_37n	1	known	missense	c.563	p.L188P	1.000	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-2	-	no_errors	IGFBP2	HGNC	ENSG00000115457	38	0	0	19	7	26.92	-	-	-	C	217525400	T	C	217525400	3	2	683	1	0	0	0	0	1	0	0	0	7633	1580	55	5	569	5	IGFBP2	2	217525400	Missense_Mutation	SNP	T	TCGA-D8-A1JE-01A-11D-A13L-09	192068182	217525400	25673973	7	59960										
ACVR2B	0	genome.wustl.edu	37	chr3	38520670	38520670	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tcttcagcacacctggcatgAagcacgagaacctgctacag	9	13	2	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	3	38520670	38520670	A	T	SNP	ACVR2B	ENST00000352511	human	ensembl	69_37n	1	known	nonsense	c.718	p.K240*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2B	HGNC	ENSG00000114739	33	0	0	20	7	25.93	-	-	-	T	38520670	A	T	38520670	4	4	683	1	0	0	0	0	0	1	0	0	224	247	9	5	740	5	ACVR2B	3	38520670	Nonsense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09		38520670	159501760	8	59961										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	32	0	0	37	30	44.78	-	-	-	G	178952085	A	G	178952085	3	3	683	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09	140431415	178952085	19070345	9	59962										
FAT4	0	genome.wustl.edu	37	chr4	126320040	126320041	+	Frame_Shift_Del	DEL	TA	TA	-													0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	attggagatggctctaagatTatgcagctgacagccatgga							TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	4	126320040	126320041	TA	-	DEL	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	frame_shift_del	c.5277_5278	p.M1760fs	0.987:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	29	0	0	51	12	18.75	-	-	-	-	126320041	TA	-	126320040	7	5	683	1	0	1	0	1	0	0	0	0	5738	1742	61	0	5283	0	FAT4	4	126320040	Frame_Shift_Del	DEL	TA	TCGA-D8-A1JE-01A-11D-A13L-09		126320040	64834236	10	59963										
GPR98	0	genome.wustl.edu	37	chr5	89970042	89970042	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tcaccatcaaagctagtgatCatccatatggtaacctgctc	6	12	3	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	5	89970042	89970042	C	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.5101	p.H1701Y	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	26	0	0	68	37	35.24	-	-	-	T	89970042	C	T	89970042	3	4	683	1	0	0	0	0	1	0	0	0	6772	826	29	2	5191	2	GPR98	5	89970042	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		89970042	90945218	11	59964										
PCDHA1	0	genome.wustl.edu	37	chr5	140167729	140167729	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	cagccggcagcaggcggcgcGcgcatcccgttccgcgtggg	17	16	0	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	5	140167729	140167729	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.1854	p.A618	0.009	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	9	0	0	44	25	36.23	-	-	-	A	140167729	G	A	140167729	2	1	683	1	0	0	0	0	0	0	0	1	11592	1074	38	1		1	PCDHA1	5	140167729	Silent	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09	50197687	140167729	40747531	12	59965										
ZNF451	0	genome.wustl.edu	37	chr6	57012098	57012098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ttactctattgccacagcagCgaagggaacaaggatccttc	9	11	1	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	6	57012098	57012098	C	A	SNP	ZNF451	ENST00000370706	human	ensembl	69_37n	1	known	missense	c.1215	p.S405R	0.977	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200	18	0	0	23	14	37.84	-	-	-	A	57012098	C	A	57012098	3	1	683	1	0	0	0	0	1	0	0	0	18018	767	27	3	1253	3	ZNF451	6	57012098	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		57012098	114102969	13	59966										
KIF13B	0	genome.wustl.edu	37	chr8	28981618	28981618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	atgcatttagccattttctaCgaagtctctctaaatctcga	5	10	4	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	8	28981618	28981618	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.3275	p.R1092H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	116	0	0	176	45	20.36	-	-	-	T	28981618	C	T	28981618	3	4	683	1	0	0	0	0	1	0	0	0	8327	536	19	1	2261	1	KIF13B	8	28981618	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		28981618	117382404	14	59967										
NRG1	0	genome.wustl.edu	37	chr8	32620793	32620793	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	cacagatccaaatgcatgcaGatccagctatcagcaactca	6	13	2	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	8	32620793	32620793	G	T	SNP	NRG1	ENST00000521670	human	ensembl	69_37n	1	known	missense	c.1326	p.Q442H	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EGF-like,pfscan_EG-like_dom,pfscan_Ig-like,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168	76	0	0	95	22	18.8	-	-	-	T	32620793	G	T	32620793	3	4	683	1	0	0	0	0	1	0	0	0	10720	933	33	2	2972	2	NRG1	8	32620793	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09	3639175	32620793	113743229	15	59968										
PSIP1	0	genome.wustl.edu	37	chr9	15490026	15490026	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tttggattgttatctatctcCcataaaccttcattaaaacc	3	10	3	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	9	15490026	15490026	C	A	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	missense	c.246	p.W82C	1.000	NULL	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	67	0	0	306	50	14.04	-	-	-	A	15490026	C	A	15490026	3	1	683	1	0	0	0	0	1	0	0	0	12743	624	22	4	1427	4	PSIP1	9	15490026	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		15490026	125723405	16	59969										
CTSL2	0	genome.wustl.edu	37	chr9	99797047	99797047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	acttgctgttattcgaatttGctccttcaaagccgtagcca	7	11	1	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	9	99797047	99797047	G	A	SNP	CTSL2	ENST00000259470	human	ensembl	69_37n	-1	known	missense	c.866	p.A289V	0.001	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSL2	HGNC	ENSG00000136943	103	0	0	236	54	18.56	-	-	-	A	99797047	G	A	99797047	3	1	683	1	0	0	0	0	1	0	0	0	4071	1319	46	4	146	4	CTSL2	9	99797047	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09	84307021	99797047	41416384	17	59970										
MYO3A	0	genome.wustl.edu	37	chr10	26446238	26446238	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tatttttgttgtgtattataGtattccctgatggatttgtt	8	3	0	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	26446238	26446238	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	splice_site	c.2794-1	e24-1	1.000	-	-	-	no_errors	MYO3A	HGNC	ENSG00000095777	86	0	0	94	30	24.19	-	-	-	A	26446238	G	A	26446238	5	1	683	1	0	0	0	0	0	0	1	0	10148	1043	36	4	2887	4	MYO3A	10	26446238	Splice_Site	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09		26446238	109088509	18	59971										
ANK3	0	genome.wustl.edu	37	chr10	61833948	61833948	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	gcctttgcttaaaacccgatTgtggtcatcttcttcactac	6	12	4	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	61833948	61833948	T	C	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.6691	p.N2231D	0.946	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	137	0	0	286	55	16.13	-	-	-	C	61833948	T	C	61833948	3	2	683	1	0	0	0	0	1	0	0	0	622	1812	63	5	6783	5	ANK3	10	61833948	Missense_Mutation	SNP	T	TCGA-D8-A1JE-01A-11D-A13L-09	35387710	61833948	73700799	19	59972										
ANK3	0	genome.wustl.edu	37	chr10	61835214	61835214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tacagatgaggtagttgcagAtattgacgacccaagggatg	13	6	0	4			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	61835214	61835214	A	T	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.5425	p.S1809T	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	32	0	0	38	28	42.42	-	-	-	T	61835214	A	T	61835214	3	4	683	1	0	0	0	0	1	0	0	0	622	333	12	5	8049	5	ANK3	10	61835214	Missense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09	1266	61835214	73699533	20	59973										
MKI67	0	genome.wustl.edu	37	chr10	129903220	129903220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	atcttttgctgccaggtaaaTttcctggcaggtccaatttc	8	10	1	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	129903220	129903220	T	C	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.6884	p.N2295S	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	90	0	0	318	99	23.63	-	-	-	C	129903220	T	C	129903220	3	2	683	1	0	0	0	0	1	0	0	0	9669	1493	52	5	2898	5	MKI67	10	129903220	Missense_Mutation	SNP	T	TCGA-D8-A1JE-01A-11D-A13L-09	68068006	129903220	5631527	21	59974										
SYT8	0	genome.wustl.edu	37	chr11	1855822	1855822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	atgctccacctgcatggctgGcaaaccatggtgggccccag	12	14	0	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	11	1855822	1855822	G	T	SNP	SYT8	ENST00000381968	human	ensembl	69_37n	1	known	missense	c.21	p.W7C	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	-	no_errors	SYT8	HGNC	ENSG00000149043	45	0	0	12	4	25	-	-	-	T	1855822	G	T	1855822	3	4	683	1	0	0	0	0	1	0	0	0	15572	1212	42	4	23	4	SYT8	11	1855822	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09		1855822	133150694	22	59975										
MSI1	0	genome.wustl.edu	37	chr12	120794783	120794783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	cccccgggctgagcccgttgGcgacatcacctcctttggct	11	17	1	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	12	120794783	120794783	G	A	SNP	MSI1	ENST00000257552	human	ensembl	69_37n	-1	known	missense	c.574	p.P192S	0.997	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097	35	0	0	67	9	11.84	-	-	-	A	120794783	G	A	120794783	3	1	683	1	0	0	0	0	1	0	0	0	9947	1203	42	4	538	4	MSI1	12	120794783	Missense_Mutation	SNP	G	TCGA-D8-A1JE-01A-11D-A13L-09		120794783	13057112	23	59976										
DDX55	0	genome.wustl.edu	37	chr12	124094511	124094511	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	acaccattctggagtttttgCcaaagcagaggagaacaggc	11	9	1	2			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	12	124094511	124094511	C	G	SNP	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	missense	c.577	p.P193A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	50	0	0	49	28	36.36	-	-	-	G	124094511	C	G	124094511	3	3	683	1	0	0	0	0	1	0	0	0	4404	739	26	4	603	4	DDX55	12	124094511	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09	3299728	124094511	9757384	24	59977										
KIAA0430	0	genome.wustl.edu	37	chr16	15702217	15702217	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tcatagtcttggagacgaaaTgtataaccaaaagttttagc	8	6	2	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	15702217	15702217	T	A	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	silent	c.4113	p.T1371	0.007	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	58	0	0	82	12	12.77	-	-	-	A	15702217	T	A	15702217	2	1	683	1	0	0	0	0	0	0	0	1	8229	1451	51	5		5	KIAA0430	16	15702217	Silent	SNP	T	TCGA-D8-A1JE-01A-11D-A13L-09		15702217	74652536	25	59978										
ANKS4B	0	genome.wustl.edu	37	chr16	21261144	21261144	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ctgcgtctcattcctggtcaActttggtgccaacatctttg	8	12	3	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	21261144	21261144	A	T	SNP	ANKS4B	ENST00000311620	human	ensembl	69_37n	1	known	missense	c.257	p.N86I	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKS4B	HGNC	ENSG00000175311	71	0	0	72	32	30.77	-	-	-	T	21261144	A	T	21261144	3	4	683	1	0	0	0	0	1	0	0	0	690	43	2	5	263	5	ANKS4B	16	21261144	Missense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09	5558927	21261144	69093609	26	59979										
FUK	0	genome.wustl.edu	37	chr16	70497609	70497609	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	acccagagaagcgtgtgggcAgcggaggagccaccctcaac	14	13	1	1			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	70497609	70497609	A	C	SNP	FUK	ENST00000378912	human	ensembl	69_37n	1	known	missense	c.166	p.S56R	1.000	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	22	0	0	9	6	40	-	-	-	C	70497609	A	C	70497609	3	2	683	1	0	0	0	0	1	0	0	0	6145	188	7	5	172	5	FUK	16	70497609	Missense_Mutation	SNP	A	TCGA-D8-A1JE-01A-11D-A13L-09	49236465	70497609	19857144	27	59980										
NLRP8	0	genome.wustl.edu	37	chr19	56466488	56466488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	tccctctctcgtaacccttcCggggtttaatacgatggaaa	8	12	1	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	19	56466488	56466488	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	69_37n	1	known	missense	c.1064	p.P355L	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	24	0	0	35	9	20.45	-	-	-	T	56466488	C	T	56466488	3	4	683	1	0	0	0	0	1	0	0	0	10555	652	23	1	1074	1	NLRP8	19	56466488	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		56466488	2662495	28	59981										
CYTH4	0	genome.wustl.edu	37	chr22	37695271	37695271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0344827586206897	1	0.987688692637431	0.710199004975124	0	0.774762550881954	1	1	0	ccgcctcctcccccagggatCccatcaacctgcaggtcctc	7	21	1	0			TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	22	37695271	37695271	C	T	SNP	CYTH4	ENST00000248901	human	ensembl	69_37n	1	known	missense	c.358	p.P120S	0.945	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH4	HGNC	ENSG00000100055	15	0	0	27	8	22.86	-	-	-	T	37695271	C	T	37695271	3	4	683	1	0	0	0	0	1	0	0	0	4237	855	30	2	380	2	CYTH4	22	37695271	Missense_Mutation	SNP	C	TCGA-D8-A1JE-01A-11D-A13L-09		37695271	13609295	29	59982										
CELA3B	0	genome.wustl.edu	37	chr1	22304922	22304922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	cgttgtcaatggtgaggatgCggtcccctacagctggccct	13	12	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	1	22304922	22304922	C	T	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	missense	c.104	p.A35V	0.979	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	143	0	0	29	36	55.38	-	-	-	T	22304922	C	T	22304922	3	4	684	1	0	0	0	0	1	0	0	0	3243	768	27	1	110	1	CELA3B	1	22304922	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09		22304922	226945699	1	59983										
PTPN22	0	genome.wustl.edu	37	chr1	114377000	114377000	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gttccaccccattccagtgaTgttccaatttttaccttcac	4	14	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	1	114377000	114377000	T	A	SNP	PTPN22	ENST00000359785	human	ensembl	69_37n	-1	known	silent	c.1956	p.T652	0.100	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242	81	0	0	67	14	17.28	-	-	-	A	114377000	T	A	114377000	2	1	684	1	0	0	0	0	0	0	0	1	12870	1451	51	5		5	PTPN22	1	114377000	Silent	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09	92072078	114377000	134873621	2	59984										
MSGN1	0	genome.wustl.edu	37	chr2	17997955	17997955	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tccatcgctggaatcctattCttcttctccctgtccagctg	6	15	3	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	2	17997955	17997955	C	T	SNP	MSGN1	ENST00000281047	human	ensembl	69_37n	1	known	missense	c.170	p.S57F	0.700	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MSGN1	HGNC	ENSG00000151379	22	0	0	6	5	45.45	-	-	-	T	17997955	C	T	17997955	3	4	684	1	0	0	0	0	1	0	0	0	9941	913	32	2	172	2	MSGN1	2	17997955	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09		17997955	225201418	3	59985										
SCN2A	0	genome.wustl.edu	37	chr2	166221684	166221684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	aactagttcatctgaaggcaGcacggttgatattggagctc	11	8	2	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	2	166221684	166221684	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.3431	p.S1144N	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	39	0	0	24	10	29.41	-	-	-	A	166221684	G	A	166221684	3	1	684	1	0	0	0	0	1	0	0	0	14004	971	34	4	3593	4	SCN2A	2	166221684	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	148223729	166221684	76977689	4	59986										
COL6A3	0	genome.wustl.edu	37	chr2	238253585	238253585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gtcaccaaaatcaacttaccGtaacagcaagctagaaaaga	6	10	2	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	2	238253585	238253585	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.7173	p.Y2391	0.286	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	70	0	0	58	11	15.94	-	-	-	A	238253585	G	A	238253585	2	1	684	1	0	0	0	0	0	0	0	1	3731	1159	40	1		1	COL6A3	2	238253585	Silent	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	72031901	238253585	4945788	5	59987										
PIK3CA	0	genome.wustl.edu	37	chr3	178927430	178927430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	atacattcctgatcttcctcGtgctgctcgactttgccttt	6	13	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	3	178927430	178927430	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1193	p.R398H	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	105	0	0	72	19	20.88	-	-	-	A	178927430	G	A	178927430	3	1	684	1	0	0	0	0	1	0	0	0	11987	1145	40	1	1215	1	PIK3CA	3	178927430	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		178927430	19095000	6	59988										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	31	0	0	16	19	54.29	-	-	-	A	178936091	G	A	178936091	3	1	684	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	8661	178936091	19086339	7	59989										
ANKRA2	0	genome.wustl.edu	37	chr5	72858604	72858604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ttctgaatttgggtccagtgGatgttctattttaatgtctg	10	5	3	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	5	72858604	72858604	G	A	SNP	ANKRA2	ENST00000296785	human	ensembl	69_37n	-1	known	missense	c.103	p.P35S	0.085	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRA2	HGNC	ENSG00000164331	83	0	0	54	8	12.7	-	-	-	A	72858604	G	A	72858604	3	1	684	1	0	0	0	0	1	0	0	0	636	1174	41	2	870	2	ANKRA2	5	72858604	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		72858604	108056656	8	59990										
PCDHA2	0	genome.wustl.edu	37	chr5	140174848	140174848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ggagctgtgcgggcggagcgCggaatgtagcatccacgtgg	19	9	0	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	5	140174848	140174848	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.299	p.A100V	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	66	0	0	24	7	22.58	-	-	-	T	140174848	C	T	140174848	3	4	684	1	0	0	0	0	1	0	0	0	11597	768	27	1	301	1	PCDHA2	5	140174848	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09	67316244	140174848	40740412	9	59991										
IL22RA2	0	genome.wustl.edu	37	chr6	137482869	137482869	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ctgatgaggaagcctagaaaGcaatgtttaggcatcatggt	12	6	1	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	6	137482869	137482869	G	A	SNP	IL22RA2	ENST00000296980	human	ensembl	69_37n	-1	known	silent	c.18	p.C6	0.643	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL22RA2	HGNC	ENSG00000164485	40	0	0	17	15	46.88	-	-	-	A	137482869	G	A	137482869	2	1	684	1	0	0	0	0	0	0	0	1	7728	963	34	4		4	IL22RA2	6	137482869	Silent	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		137482869	33632198	10	59992										
EGFR	0	genome.wustl.edu	37	chr7	55211097	55211097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tcagaggaaatatgtactacGaaaattcctatgccttagca	7	8	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	7	55211097	55211097	G	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	missense	c.340	p.E114K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	51	0	0	26	26	50	-	-	-	A	55211097	G	A	55211097	3	1	684	1	0	0	0	0	1	0	0	0	5002	1059	37	1	350	1	EGFR	7	55211097	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		55211097	103927566	11	59993										
DLC1	0	genome.wustl.edu	37	chr8	12956964	12956964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ctgtgctgtccaggtcgctgGgtgtggttcggtcgttgtcc	16	10	0	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	8	12956964	12956964	G	T	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.2882	p.P961H	0.996	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	139	0	0	96	70	42.17	-	-	-	T	12956964	G	T	12956964	3	4	684	1	0	0	0	0	1	0	0	0	4586	1232	43	4	1744	4	DLC1	8	12956964	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		12956964	133407058	12	59994										
CLU	0	genome.wustl.edu	37	chr8	27461880	27461880	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gcccgtggagttgtggcggaTctcccggcacacagtccggt	15	13	1	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	8	27461880	27461880	T	C	SNP	CLU	ENST00000560366	human	ensembl	69_37n	-1	known	missense	c.1018	p.I340V	1.000	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLU	HGNC	ENSG00000120885	56	0	0	16	29	64.44	-	-	-	C	27461880	T	C	27461880	3	2	684	1	0	0	0	0	1	0	0	0	3598	1435	50	5	503	5	CLU	8	27461880	Missense_Mutation	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09	14504916	27461880	118902142	13	59995										
UBAP2	0	genome.wustl.edu	37	chr9	33923840	33923841	+	In_Frame_Ins	INS	-	-	GGG													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ctgggcatgcctgtgtagtaINSgggaagaccagtgtagctat							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	9	33923840	33923841	-	GGG	INS	UBAP2	ENST00000360802	human	ensembl	69_37n	-1	known	in_frame_ins	c.2749_2748	p.916in_frame_insP	1.000:1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	243	0	0	36	5	12.2	-	-	-	GGG	33923841	-	GGG	33923840	7	5	684	1	0	1	1	0	0	0	0	0	16934	420	15	0	634	0	UBAP2	9	33923840	In_Frame_Ins	INS	-	TCGA-D8-A1JF-01A-11D-A13L-09		33923840	107289591	14	59996										
FKBP15	0	genome.wustl.edu	37	chr9	115931891	115931891	+	Frame_Shift_Del	DEL	G	G	-													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gccctagaactctgtgggatGggatgcaagacagttcgggt							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	9	115931891	115931891	G	-	DEL	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	frame_shift_del	c.3098	p.P1033fs	0.148	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	76	0	0	8	2	20	-	-	-	-	115931891	G	-	115931891	7	5	684	1	0	1	0	1	0	0	0	0	5951	1348	47	0	573	0	FKBP15	9	115931891	Frame_Shift_Del	DEL	G	TCGA-D8-A1JF-01A-11D-A13L-09	82008051	115931891	25281540	15	59997										
ARID5B	0	genome.wustl.edu	37	chr10	63851397	63851397	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	aaaaagaaactgattgctagGgatgacttgtgttccagttt	10	5	0	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	10	63851397	63851397	G	C	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.2175	p.R725S	0.998	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	49	0	0	33	8	19.51	-	-	-	C	63851397	G	C	63851397	3	2	684	1	0	0	0	0	1	0	0	0	924	1223	43	4	2213	4	ARID5B	10	63851397	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		63851397	71683350	16	59998										
OR5I1	0	genome.wustl.edu	37	chr11	55703086	55703086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ttggagaatacaggtagctgGgccgtgagtaaataaagagg	15	4	0	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	11	55703086	55703086	G	C	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	missense	c.791	p.P264R	0.944	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	61	0	0	27	18	40	-	-	-	C	55703086	G	C	55703086	3	2	684	1	0	0	0	0	1	0	0	0	11237	1232	43	4	156	4	OR5I1	11	55703086	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		55703086	79303430	17	59999										
OTUB1	0	genome.wustl.edu	37	chr11	63753882	63753882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gggctcgcttccgggaggacGgcaattggcaacccggaagc	16	12	0	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	11	63753882	63753882	G	C	SNP	OTUB1	ENST00000422031	human	ensembl	69_37n	1	known	missense	c.65	p.R22P	0.359	NULL	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB1	HGNC	ENSG00000167770	17	0	0	12	4	25	-	-	-	C	63753882	G	C	63753882	3	2	684	1	0	0	0	0	1	0	0	0	11384	1131	39	3		3	OTUB1	11	63753882	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	8050796	63753882	71252634	18	60000										
GRM5	0	genome.wustl.edu	37	chr11	88583174	88583174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gaagcaggccaccacccgggCcttgggcaagtgacttgtga	14	12	0	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	11	88583174	88583174	C	T	SNP	GRM5	ENST00000305447	human	ensembl	69_37n	-1	known	missense	c.811	p.A271T	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1	-	no_errors	GRM5	HGNC	ENSG00000168959	56	0	0	30	14	31.82	-	-	-	T	88583174	C	T	88583174	3	4	684	1	0	0	0	0	1	0	0	0	6851	739	26	4	2859	4	GRM5	11	88583174	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09	24829292	88583174	46423342	19	60001										
DENND5B	0	genome.wustl.edu	37	chr12	31579329	31579329	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ttgggttgcctcaggtttttTcctaaacttcgtgcctcttg	9	10	2	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	12	31579329	31579329	T	C	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	silent	c.2241	p.G747	0.740	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	77	0	0	47	16	25.4	-	-	-	C	31579329	T	C	31579329	2	2	684	1	0	0	0	0	0	0	0	1	4473	1770	62	5		5	DENND5B	12	31579329	Silent	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09		31579329	102272566	20	60002										
KIF21A	0	genome.wustl.edu	37	chr12	39734847	39734848	+	Frame_Shift_Ins	INS	-	-	TTAA													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gttcatcaatcagcttttgcINSttaattgcaatttcacaagt							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	12	39734847	39734848	-	TTAA	INS	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1971_1970	p.K657fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	138	0	0	100	16	13.79	-	-	-	TTAA	39734848	-	TTAA	39734847	7	5	684	1	0	1	1	0	0	0	0	0	8340	796	28	0	3149	0	KIF21A	12	39734847	Frame_Shift_Ins	INS	-	TCGA-D8-A1JF-01A-11D-A13L-09	8155518	39734847	94117048	21	60003										
ANO6	0	genome.wustl.edu	37	chr12	45781974	45781974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tttggagttttggaagcgacGccaggcagaacttgagtatg	14	6	0	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	12	45781974	45781974	G	A	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.1196	p.R399H	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	75	0	0	65	12	15.38	-	-	-	A	45781974	G	A	45781974	3	1	684	1	0	0	0	0	1	0	0	0	700	1087	38	1	1258	1	ANO6	12	45781974	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	6047127	45781974	88069921	22	60004										
USP10	0	genome.wustl.edu	37	chr16	84778300	84778300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	attgaacccagtgacactttGccgagaacccccagctacag	8	14	0	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	16	84778300	84778300	G	T	SNP	USP10	ENST00000570191	human	ensembl	69_37n	1	known	missense	c.225	p.L75F	0.138	NULL	pfam_Peptidase_C19,pfam_Ataxin-2_C,pfscan_Peptidase_C19	-	no_errors	USP10	HGNC	ENSG00000103194	67	0	0	48	17	26.15	-	-	-	T	84778300	G	T	84778300	3	4	684	1	0	0	0	0	1	0	0	0	17138	1310	46	4	227	4	USP10	16	84778300	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		84778300	5576453	23	60005										
TP53	0	genome.wustl.edu	37	chr17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	cgctatctgagcagcgctcaTggtgggggcagcgcctcaca	14	13	3	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	17	7578394	7578394	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.536	p.H179R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0	12	15	55.56	-	-	-	C	7578394	T	C	7578394	3	2	684	1	0	0	0	0	1	0	0	0	16477	1464	51	5	762	5	TP53	17	7578394	Missense_Mutation	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09		7578394	73616816	24	60006										
PER1	0	genome.wustl.edu	37	chr17	8051116	8051116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	acagaagcggataggggagtGgtcaaagggctggcccgcca	17	9	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	17	8051116	8051116	G	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.1264	p.H422Y	1.000	pfam_PAS_fold_3	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	41	0	0	5	6	54.55	-	-	-	A	8051116	G	A	8051116	3	1	684	1	0	0	0	0	1	0	0	0	11802	1348	47	4	2660	4	PER1	17	8051116	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	472722	8051116	73144094	25	60007										
FHOD3	0	genome.wustl.edu	37	chr18	34297797	34297797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tctcccatgtactttcaggtTtgtggcccgcaggtgtccag	11	12	2	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	18	34297797	34297797	T	G	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.2011	p.L671V	0.962	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	92	0	0	62	23	27.06	-	-	-	G	34297797	T	G	34297797	3	3	684	1	0	0	0	0	1	0	0	0	5929	1838	64	5	2073	5	FHOD3	18	34297797	Missense_Mutation	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09		34297797	43779451	26	60008										
ZNF564	0	genome.wustl.edu	37	chr19	12639170	12639171	+	Frame_Shift_Ins	INS	-	-	T													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tcaatgctctggtcttcccaINStttttttcctaaaatatagt							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	19	12639170	12639171	-	T	INS	ZNF564	ENST00000339282	human	ensembl	69_37n	-1	known	frame_shift_ins	c.139_138	p.W46fs	0.833:0.789	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	77	0	0	35	20	36.36	-	-	-	T	12639171	-	T	12639170	7	5	684	1	0	1	1	0	0	0	0	0	18091	217	8	0	1530	0	ZNF564	19	12639170	Frame_Shift_Ins	INS	-	TCGA-D8-A1JF-01A-11D-A13L-09		12639170	46489813	27	60009										
DMPK	0	genome.wustl.edu	37	chr19	46282601	46282601	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	tcaccaacacgtccctctccTcacggaagcacgacacctgc	6	19	3	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	19	46282601	46282601	T	G	SNP	DMPK	ENST00000343373	human	ensembl	69_37n	-1	known	missense	c.383	p.E128A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	DMPK	HGNC	ENSG00000104936	76	0	0	25	21	45.65	-	-	-	G	46282601	T	G	46282601	3	3	684	1	0	0	0	0	1	0	0	0	4620	1551	54	5	1591	5	DMPK	19	46282601	Missense_Mutation	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09	33643431	46282601	12846382	28	60010										
COMMD7	0	genome.wustl.edu	37	chr20	31294404	31294404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ccttttcagaaaagtaagtgGctttctcctcactaagacct	6	11	3	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	20	31294404	31294404	G	A	SNP	COMMD7	ENST00000278980	human	ensembl	69_37n	-1	known	missense	c.317	p.A106V	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD7	HGNC	ENSG00000149600	74	0	0	40	33	45.21	-	-	-	A	31294404	G	A	31294404	3	1	684	1	0	0	0	0	1	0	0	0	3751	1203	42	4	305	4	COMMD7	20	31294404	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		31294404	31731116	29	60011										
C20orf132	0	genome.wustl.edu	37	chr20	35731179	35731179	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	cgccatctggactagtaacaGagtctgggaagcgatgatgc	13	9	2	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	20	35731179	35731179	G	C	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.3040	p.L1014V	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	84	0	0	35	48	57.83	-	-	-	C	35731179	G	C	35731179	3	2	684	1	0	0	0	0	1	0	0	0	2106	933	33	2	92	2	C20orf132	20	35731179	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	4436775	35731179	27294341	30	60012										
APCDD1L	0	genome.wustl.edu	37	chr20	57036021	57036021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gtgcttggtaggaggtgggaCgtttctctggggtatcggga	19	5	1	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	20	57036021	57036021	C	T	SNP	APCDD1L	ENST00000439429	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455H	0.994	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768	48	0	0	17	7	29.17	-	-	-	T	57036021	C	T	57036021	3	4	684	1	0	0	0	0	1	0	0	0	767	536	19	1	178	1	APCDD1L	20	57036021	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09	21304842	57036021	5989499	31	60013										
DSCAM	0	genome.wustl.edu	37	chr21	41710185	41710185	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	cggtggttgaaaggaagcagGttagagttcttgtaccattt	13	5	1	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	21	41710185	41710185	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.1626	p.N542	0.092	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	100	0	0	58	24	29.27	-	-	-	A	41710185	G	A	41710185	2	1	684	1	0	0	0	0	0	0	0	1	4803	1252	44	4		4	DSCAM	21	41710185	Silent	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09		41710185	6419710	32	60014										
TNRC6B	0	genome.wustl.edu	37	chr22	40661738	40661738	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	aatggggtgaagggaacaaaAtgacatctggggtctctcag	14	6	3	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	22	40661738	40661738	A	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.1504	p.M502V	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	34	0	0	7	5	41.67	-	-	-	G	40661738	A	G	40661738	3	3	684	1	0	0	0	0	1	0	0	0	16436	101	4	5	1643	5	TNRC6B	22	40661738	Missense_Mutation	SNP	A	TCGA-D8-A1JF-01A-11D-A13L-09		40661738	10642828	33	60015										
GRIPAP1	0	genome.wustl.edu	37	chrX	48853758	48853758	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	atctcattttcactcagcaaTacctcgacttcctgcagtgg	6	13	3	0			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	48853758	48853758	T	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	silent	c.210	p.V70	0.863	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	86	0	0	43	15	25.86	-	-	-	A	48853758	T	A	48853758	2	1	684	1	0	0	0	0	0	0	0	1	6840	1393	49	5		5	GRIPAP1	23	48853758	Silent	SNP	T	TCGA-D8-A1JF-01A-11D-A13L-09		48853758	106416802	34	60016										
CLCN5	0	genome.wustl.edu	37	chrX	49845354	49845354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ggtgtttgcgccttatgcctGtggctctggaatccctgagg	14	10	1	1			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	49845354	49845354	G	A	SNP	CLCN5	ENST00000376088	human	ensembl	69_37n	1	known	missense	c.707	p.C236Y	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365	129	0	0	79	15	15.96	-	-	-	A	49845354	G	A	49845354	3	1	684	1	0	0	0	0	1	0	0	0	3496	1377	48	4	729	4	CLCN5	23	49845354	Missense_Mutation	SNP	G	TCGA-D8-A1JF-01A-11D-A13L-09	991596	49845354	105425206	35	60017										
CCNB3	0	genome.wustl.edu	37	chrX	50031866	50031866	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ggagcactcaaaaagagatcAgcttttgaagatctcactaa	8	8	3	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	50031866	50031866	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	silent	c.183	p.S61	0.998	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	69	0	0	62	16	20.51	-	-	-	C	50031866	A	C	50031866	2	2	684	1	0	0	0	0	0	0	0	1	2943	175	7	5		5	CCNB3	23	50031866	Silent	SNP	A	TCGA-D8-A1JF-01A-11D-A13L-09	186512	50031866	105238694	36	60018										
ABCB7	0	genome.wustl.edu	37	chrX	74376106	74376106	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	aatgcatcgcgagcagcgccAtcttgagcgaggaaagagga	14	9	1	2			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	74376106	74376106	A	G	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.2	p.M1T	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	10	0	0	5	4	44.44	-	-	-	G	74376106	A	G	74376106	3	3	684	1	0	0	0	0	1	0	0	0	46	217	8	5	2323	5	ABCB7	23	74376106	Missense_Mutation	SNP	A	TCGA-D8-A1JF-01A-11D-A13L-09	24344240	74376106	80894454	37	60019										
FAM122C	0	genome.wustl.edu	37	chrX	133979418	133979418	+	Frame_Shift_Del	DEL	A	A	-													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	gataagtcactcttgggaagAaggcttgaaactggtatgat							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	133979418	133979418	A	-	DEL	FAM122C	ENST00000370784	human	ensembl	69_37n	1	known	frame_shift_del	c.332	p.G112fs	0.148	NULL	NULL	-	no_errors	FAM122C	HGNC	ENSG00000156500	21	0	0	11	5	29.41	-	-	-	-	133979418	A	-	133979418	7	5	684	1	0	1	0	1	0	0	0	0	5461	246	9	0	814	0	FAM122C	23	133979418	Frame_Shift_Del	DEL	A	TCGA-D8-A1JF-01A-11D-A13L-09	59603312	133979418	21291142	38	60020										
SAGE1	0	genome.wustl.edu	37	chrX	134992588	134992588	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ttccagatgctgcagtcactCacaacatccgtgaagagaag	9	11	2	3			TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	134992588	134992588	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.1879	p.H627Y	0.018	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	85	0	0	64	9	12.33	-	-	-	T	134992588	C	T	134992588	3	4	684	1	0	0	0	0	1	0	0	0	13895	826	29	2	1937	2	SAGE1	23	134992588	Missense_Mutation	SNP	C	TCGA-D8-A1JF-01A-11D-A13L-09	1013170	134992588	20277972	39	60021										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.1	4	0.70036240589232	1.3168044077135	1.81060606060606	1.20707070707071	0.485714285714286	1	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-D8-A1JF-01A-11D-A13L-09	TCGA-D8-A1JF-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d31358da-639c-4fe5-9f7c-c17c31fd2865	0917f25a-6777-491e-9ecd-64183b063739	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	67	0	0	69	10	12.66	-	-	-	AA	135960147	-	AA	135960146	7	5	684	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-D8-A1JF-01A-11D-A13L-09	967558	135960146	19310414	40	60022										
PRAMEF12	0	genome.wustl.edu	37	chr1	12835814	12835814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	agcagggaactgtccaaggcCgggtgggcagcagcccttga	16	11	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	12835814	12835814	C	T	SNP	PRAMEF12	ENST00000357726	human	ensembl	69_37n	1	known	missense	c.416	p.P139L	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726	62	0	0	59	31	34.44	-	-	-	T	12835814	C	T	12835814	3	4	685	1	0	0	0	0	1	0	0	0	12505	652	23	1	422	1	PRAMEF12	1	12835814	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		12835814	236414807	1	60023										
PRAMEF11	0	genome.wustl.edu	37	chr1	12885009	12885009	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aggatacagctccaggcataAgtttttgagtatgattgtgt	11	5	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	12885009	12885009	A	C	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.1102	p.L368V	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	114	0	0	243	32	11.64	-	-	-	C	12885009	A	C	12885009	3	2	685	1	0	0	0	0	1	0	0	0	12504	69	3	5	212	5	PRAMEF11	1	12885009	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	49195	12885009	236365612	2	60024										
PAX7	0	genome.wustl.edu	37	chr1	19018346	19018346	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccacattcacggccgagcagCtggaggagctggagaaggcc	15	12	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	19018346	19018346	C	A	SNP	PAX7	ENST00000375375	human	ensembl	69_37n	1	known	missense	c.685	p.L229M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Paired_dom,pfam_Homeodomain,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,prints_Paired_dom,pfscan_Homeodomain,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709	13	0	0	12	16	57.14	-	-	-	A	19018346	C	A	19018346	3	1	685	1	0	0	0	0	1	0	0	0	11557	796	28	4	703	4	PAX7	1	19018346	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	6133337	19018346	230232275	3	60025										
SYTL1	0	genome.wustl.edu	37	chr1	27680340	27680340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	accaacctggcccccaggacGtagccccaccaagcctctct	7	20	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	27680340	27680340	G	A	SNP	SYTL1	ENST00000543823	human	ensembl	69_37n	1	known	silent	c.1686	p.T562	0.094	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL1	HGNC	ENSG00000142765	44	0	0	24	13	34.21	-	-	-	A	27680340	G	A	27680340	2	1	685	1	0	0	0	0	0	0	0	1	15574	1132	40	1		1	SYTL1	1	27680340	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	8661994	27680340	221570281	4	60026										
C1orf141	0	genome.wustl.edu	37	chr1	67581050	67581050	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	attacctgttgactcactttCtttattttttacatttgttt	3	7	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	67581050	67581050	C	A	SNP	C1orf141	ENST00000371006	human	ensembl	69_37n	-1	known	nonsense	c.331	p.E111*	0.825	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963	68	0	0	91	14	13.33	-	-	-	A	67581050	C	A	67581050	4	1	685	1	0	0	0	0	0	1	0	0	2020	922	32	2	887	2	C1orf141	1	67581050	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	39900710	67581050	181669571	5	60027										
FCRL4	0	genome.wustl.edu	37	chr1	157557342	157557342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	agctttcagctctggatgtgGaaatagttctagagagaaga	12	5	3	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	157557342	157557342	G	A	SNP	FCRL4	ENST00000271532	human	ensembl	69_37n	-1	known	missense	c.571	p.P191S	0.978	NULL	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL4	HGNC	ENSG00000163518	54	0	0	56	10	15.15	-	-	-	A	157557342	G	A	157557342	3	1	685	1	0	0	0	0	1	0	0	0	5843	1174	41	2	1008	2	FCRL4	1	157557342	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	89976292	157557342	91693279	6	60028										
FCRL3	0	genome.wustl.edu	37	chr1	157650537	157650537	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gctccagatctgggaataaaTcgggttgctatctccaggat	11	9	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	157650537	157650537	T	C	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	missense	c.1981	p.I661V	0.010	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	115	0	0	149	33	18.13	-	-	-	C	157650537	T	C	157650537	3	2	685	1	0	0	0	0	1	0	0	0	5842	1435	50	5	235	5	FCRL3	1	157650537	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	93195	157650537	91600084	7	60029										
FMO2	0	genome.wustl.edu	37	chr1	171162534	171162534	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcgttaccaacaccagcaaaGaaatgtcctgtttcagtgac	7	11	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	171162534	171162534	G	T	SNP	FMO2	ENST00000209929	human	ensembl	69_37n	1	known	nonsense	c.193	p.E65*	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	61	0	0	73	10	12.05	-	-	-	T	171162534	G	T	171162534	4	4	685	1	0	0	0	0	0	1	0	0	6001	943	33	2	199	2	FMO2	1	171162534	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	13511997	171162534	78088087	8	60030										
F13B	0	genome.wustl.edu	37	chr1	197032127	197032127	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttggaaagtaaaagcttttaAaagtatagtaatattgggca	9	2	0	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	197032127	197032127	A	C	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	missense	c.125	p.F42C	1.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	52	0	0	62	15	19.48	-	-	-	C	197032127	A	C	197032127	3	2	685	1	0	0	0	0	1	0	0	0	5378	14	1	5	1904	5	F13B	1	197032127	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	25869593	197032127	52218494	9	60031										
UBE2T	0	genome.wustl.edu	37	chr1	202304779	202304779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgatttgatacctacgagctCgcaggtcatccatttggtct	9	10	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	202304779	202304779	C	T	SNP	UBE2T	ENST00000367274	human	ensembl	69_37n	-1	known	missense	c.104	p.R35Q	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152	68	0	0	93	18	16.22	-	-	-	T	202304779	C	T	202304779	3	4	685	1	0	0	0	0	1	0	0	0	16970	884	31	1	513	1	UBE2T	1	202304779	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	5272652	202304779	46945842	10	60032										
PLEKHA6	0	genome.wustl.edu	37	chr1	204192633	204192633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atagctgctgtcggcgccccGtggggattcagacgacaggg	16	11	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	204192633	204192633	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.3112	p.R1038W	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	38	0	0	28	17	36.96	-	-	-	A	204192633	G	A	204192633	3	1	685	1	0	0	0	0	1	0	0	0	12134	1144	40	1	38	1	PLEKHA6	1	204192633	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	1887854	204192633	45057988	11	60033										
MARK1	0	genome.wustl.edu	37	chr1	220824018	220824018	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aatacatatgtctgtgaaagGaccacagatcgatacgtagc	9	8	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	220824018	220824018	G	A	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	silent	c.1527	p.R509	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	60	0	0	80	13	13.83	-	-	-	A	220824018	G	A	220824018	2	1	685	1	0	0	0	0	0	0	0	1	9383	1165	41	2		2	MARK1	1	220824018	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	16631385	220824018	28426603	12	60034										
RGS7	0	genome.wustl.edu	37	chr1	240969623	240969623	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aggtcctccactgccagccaGaatctatgcagaatgtgaga	10	11	1	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	240969623	240969623	G	T	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	missense	c.1086	p.F362L	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	55	0	0	55	15	21.43	-	-	-	T	240969623	G	T	240969623	3	4	685	1	0	0	0	0	1	0	0	0	13394	933	33	2	393	2	RGS7	1	240969623	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	20145605	240969623	8280998	13	60035										
CHML	0	genome.wustl.edu	37	chr1	241798027	241798027	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tattgtagtgcaagatgattCtgatgtcattgcaattgagt	10	4	2	4			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	241798027	241798027	C	A	SNP	CHML	ENST00000366553	human	ensembl	69_37n	-1	known	nonsense	c.1042	p.E348*	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668	80	0	0	96	13	11.93	-	-	-	A	241798027	C	A	241798027	4	1	685	1	0	0	0	0	0	1	0	0	3380	922	32	2	932	2	CHML	1	241798027	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	828404	241798027	7452594	14	60036										
PGBD2	0	genome.wustl.edu	37	chr1	249212333	249212333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggtggacctccttgccttccGgagatacattgcctgtgtgt	12	11	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	1	249212333	249212333	G	A	SNP	PGBD2	ENST00000329291	human	ensembl	69_37n	1	known	missense	c.1550	p.R517Q	0.988	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220	44	0	0	32	25	43.86	-	-	-	A	249212333	G	A	249212333	3	1	685	1	0	0	0	0	1	0	0	0	11855	1116	39	1	1556	1	PGBD2	1	249212333	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	7414306	249212333	38288	15	60037										
BRE	0	genome.wustl.edu	37	chr2	28117484	28117484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tctcccctttcatatctagcGtggtccggaatggaaaagtg	10	10	3	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	28117484	28117484	G	A	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	missense	c.61	p.V21M	0.998	pfam_Brain/reproduct-express_prot	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	103	0	0	149	21	12.35	-	-	-	A	28117484	G	A	28117484	3	1	685	1	0	0	0	0	1	0	0	0	1517	1145	40	1	63	1	BRE	2	28117484	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		28117484	215081889	16	60038										
PLEKHH2	0	genome.wustl.edu	37	chr2	43937469	43937469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttactttactacaaatctccGgtgagtggaaagtgttttct	8	7	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	43937469	43937469	G	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	silent	c.2214	p.P738	0.842	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	123	1	0.81	147	61	29.33	-	-	-	A	43937469	G	A	43937469	2	1	685	1	0	0	0	0	0	0	0	1	12151	1130	39	1		1	PLEKHH2	2	43937469	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	15819985	43937469	199261904	17	60039										
POLR1A	0	genome.wustl.edu	37	chr2	86276027	86276027	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cttgttaatctcattgctgtAatggttcacttcctccttga	6	10	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	86276027	86276027	A	C	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.2614	p.Y872D	1.000	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	90	0	0	121	25	17.12	-	-	-	C	86276027	A	C	86276027	3	2	685	1	0	0	0	0	1	0	0	0	12283	362	13	5	2616	5	POLR1A	2	86276027	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	42338558	86276027	156923346	18	60040										
TMEM131	0	genome.wustl.edu	37	chr2	98412831	98412831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tattctctaccttaaatgttCttttcaatgtgaaatttggt	5	6	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	98412831	98412831	C	A	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.3050	p.R1017I	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	76	0	0	193	32	14.22	-	-	-	A	98412831	C	A	98412831	3	1	685	1	0	0	0	0	1	0	0	0	16139	913	32	2	2657	2	TMEM131	2	98412831	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	12136804	98412831	144786542	19	60041										
INPP4A	0	genome.wustl.edu	37	chr2	99175925	99175925	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcgccctccatttctgtgcaGattgcagtccccctcctgaa	7	16	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	99175925	99175925	G	C	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	splice_site	c.1838-1	e16-1	1.000	-	-	-	no_errors	INPP4A	HGNC	ENSG00000040933	136	0	0	196	80	28.99	-	-	-	C	99175925	G	C	99175925	5	2	685	1	0	0	0	0	0	0	1	0	7806	956	33	2	1899	2	INPP4A	2	99175925	Splice_Site	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	763094	99175925	144023448	20	60042										
PRPF40A	0	genome.wustl.edu	37	chr2	153525674	153525674	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gaaagattccctattttttcGctgtcgtctcctttctctca	5	12	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	153525674	153525674	G	A	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	nonsense	c.1741	p.R581*	1.000	superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	145	0	0	212	29	11.98	-	-	-	A	153525674	G	A	153525674	4	1	685	1	0	0	0	0	0	1	0	0	12652	1095	38	1	1095	1	PRPF40A	2	153525674	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	54349749	153525674	89673699	21	60043										
SCN3A	0	genome.wustl.edu	37	chr2	165969454	165969454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gaaatatgtttgaaatccatAagcaacccatttgagaagca	7	7	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	165969454	165969454	A	G	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.3784	p.Y1262H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	91	0	0	149	34	18.58	-	-	-	G	165969454	A	G	165969454	3	3	685	1	0	0	0	0	1	0	0	0	14006	362	13	5	2250	5	SCN3A	2	165969454	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	12443780	165969454	77229919	22	60044										
TTN	0	genome.wustl.edu	37	chr2	179574368	179574368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gcatgtgtacaaaccagcgtCgttcatgcctgctttcctga	9	12	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	179574368	179574368	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.24946	p.D8316N	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	110	0	0	203	36	15.06	-	-	-	T	179574368	C	T	179574368	3	4	685	1	0	0	0	0	1	0	0	0	16832	884	31	1	75907	1	TTN	2	179574368	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	13604914	179574368	63625005	23	60045										
CPS1	0	genome.wustl.edu	37	chr2	211503908	211503908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgcagaatacccatcagtaaCaaactatctctatgttacct	4	11	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	211503908	211503908	C	A	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.2882	p.T961K	1.000	pfam_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_lsu_oligo,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	51	0	0	74	41	35.65	-	-	-	A	211503908	C	A	211503908	3	1	685	1	0	0	0	0	1	0	0	0	3853	478	17	4	2976	4	CPS1	2	211503908	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	31929540	211503908	31695465	24	60046										
WDR69	0	genome.wustl.edu	37	chr2	228786260	228786260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atgtgctttcaactataaagGcaacatagtcattacaggta	7	7	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	2	228786260	228786260	G	A	SNP	WDR69	ENST00000309931	human	ensembl	69_37n	1	known	missense	c.1196	p.G399D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR69	HGNC	ENSG00000123977	38	0	0	56	8	12.5	-	-	-	A	228786260	G	A	228786260	3	1	685	1	0	0	0	0	1	0	0	0	17416	1203	42	4	1242	4	WDR69	2	228786260	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	17282352	228786260	14413113	25	60047										
CAMKV	0	genome.wustl.edu	37	chr3	49898960	49898960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cgttgcttgtgtctcgctccGagtagtagccctggtccagg	13	12	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	3	49898960	49898960	G	A	SNP	CAMKV	ENST00000477224	human	ensembl	69_37n	-1	known	missense	c.353	p.S118L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076	42	0	0	28	18	39.13	-	-	-	A	49898960	G	A	49898960	3	1	685	1	0	0	0	0	1	0	0	0	2633	1059	37	1	1180	1	CAMKV	3	49898960	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		49898960	148123470	26	60048										
BTLA	0	genome.wustl.edu	37	chr3	112185099	112185099	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tccaggcatggattagaataAacttcagacccttcctgcat	7	11	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	3	112185099	112185099	A	C	SNP	BTLA	ENST00000334529	human	ensembl	69_37n	-1	known	silent	c.726	p.V242	0.439	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	BTLA	HGNC	ENSG00000186265	35	0	0	66	9	12	-	-	-	C	112185099	A	C	112185099	2	2	685	1	0	0	0	0	0	0	0	1	1567	1	1	5		5	BTLA	3	112185099	Silent	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	62286139	112185099	85837331	27	60049										
PIK3CA	0	genome.wustl.edu	37	chr3	178928086	178928087	+	Frame_Shift_Ins	INS	-	-	G													0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cctcatggattagaagatttINSgctgaaccctattggtgtta							TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	3	178928086	178928087	-	G	INS	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	frame_shift_ins	c.1364_1365	p.L456fs	1.000:1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	109	0	0	68	8	10.53	-	-	-	G	178928087	-	G	178928086	7	5	685	1	0	1	1	0	0	0	0	0	11987	1821	63	0	1390	0	PIK3CA	3	178928086	Frame_Shift_Ins	INS	-	TCGA-D8-A1JG-01B-11D-A13L-09	66742987	178928086	19094344	28	60050										
WDR1	0	genome.wustl.edu	37	chr4	10079036	10079036	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tggggaccaggccaggcagaCgatttttgcatggtgtccat	14	9	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	10079036	10079036	C	G	SNP	WDR1	ENST00000382452	human	ensembl	69_37n	-1	known	missense	c.1606	p.V536L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR1	HGNC	ENSG00000071127	62	0	0	67	45	40.18	-	-	-	G	10079036	C	G	10079036	3	3	685	1	0	0	0	0	1	0	0	0	17369	536	19	3	222	3	WDR1	4	10079036	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		10079036	181075240	29	60051										
N4BP2	0	genome.wustl.edu	37	chr4	40121887	40121887	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	taaaactgacacagatagttCtatggagagagtatcaccta	8	7	2	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	40121887	40121887	C	A	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	1	known	missense	c.2156	p.S719Y	0.000	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	32	0	0	22	7	24.14	-	-	-	A	40121887	C	A	40121887	3	1	685	1	0	0	0	0	1	0	0	0	10182	913	32	2	2182	2	N4BP2	4	40121887	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	30042851	40121887	151032389	30	60052										
ENAM	0	genome.wustl.edu	37	chr4	71500234	71500234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccacaaaagcggcctttgaaGcagccatcacataatcaacc	6	14	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	71500234	71500234	G	T	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.420	p.K140N	0.841	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	69	0	0	111	51	31.48	-	-	-	T	71500234	G	T	71500234	3	4	685	1	0	0	0	0	1	0	0	0	5149	962	34	4	438	4	ENAM	4	71500234	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	31378347	71500234	119654042	31	60053										
IBSP	0	genome.wustl.edu	37	chr4	88723554	88723554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gctcagcattttgggaatggCctgtgctttctcagtaagtt	11	8	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	88723554	88723554	C	T	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	1	known	missense	c.41	p.A14V	1.000	NULL	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	65	0	0	76	19	20	-	-	-	T	88723554	C	T	88723554	3	4	685	1	0	0	0	0	1	0	0	0	7529	739	26	4	43	4	IBSP	4	88723554	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	17223320	88723554	102430722	32	60054										
AP1AR	0	genome.wustl.edu	37	chr4	113189561	113189561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgacacagatcaacagactcGatagggtaaaattgtgtgac	10	7	1	4			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	113189561	113189561	G	A	SNP	AP1AR	ENST00000274000	human	ensembl	69_37n	1	known	missense	c.905	p.R302Q	1.000	NULL	NULL	-	no_errors	AP1AR	HGNC	ENSG00000138660	37	0	0	61	20	24.69	-	-	-	A	113189561	G	A	113189561	3	1	685	1	0	0	0	0	1	0	0	0	731	1058	37	1	943	1	AP1AR	4	113189561	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	24466007	113189561	77964715	33	60055										
MYOZ2	0	genome.wustl.edu	37	chr4	120072076	120072076	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gtcagcatccccagagacatCatgttggaagaattatccca	8	11	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	120072076	120072076	C	A	SNP	MYOZ2	ENST00000307128	human	ensembl	69_37n	1	known	silent	c.126	p.I42	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ2	HGNC	ENSG00000172399	86	0	0	140	23	14.11	-	-	-	A	120072076	C	A	120072076	2	1	685	1	0	0	0	0	0	0	0	1	10168	816	29	2		2	MYOZ2	4	120072076	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	6882515	120072076	71082200	34	60056										
MND1	0	genome.wustl.edu	37	chr4	154315444	154315444	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gaagtcaaaagcatgcaagcCtacagaaaagcattgagaaa	9	7	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	154315444	154315444	C	G	SNP	MND1	ENST00000240488	human	ensembl	69_37n	1	known	missense	c.307	p.L103V	0.686	pfam_Mnd1,pfam_Pencillinase_R,pirsf_Mnd1	pfam_Mnd1,pfam_Pencillinase_R,pirsf_Mnd1	-	no_errors	MND1	HGNC	ENSG00000121211	79	0	0	141	58	29.15	-	-	-	G	154315444	C	G	154315444	3	3	685	1	0	0	0	0	1	0	0	0	9747	680	24	4	325	4	MND1	4	154315444	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	34243368	154315444	36838832	35	60057										
ASB5	0	genome.wustl.edu	37	chr4	177142658	177142658	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgactccagctgggctttggCaccatactccagaagcagct	10	13	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	4	177142658	177142658	C	A	SNP	ASB5	ENST00000296525	human	ensembl	69_37n	-1	known	missense	c.478	p.A160S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB5	HGNC	ENSG00000164122	38	0	0	70	30	30	-	-	-	A	177142658	C	A	177142658	3	1	685	1	0	0	0	0	1	0	0	0	1030	710	25	4	527	4	ASB5	4	177142658	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	22827214	177142658	14011618	36	60058										
TRIO	0	genome.wustl.edu	37	chr5	14363873	14363873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ctcgagtcttggaatgatgaGctttctcagcaaatgaatga	10	7	2	4			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	14363873	14363873	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.2424	p.E808	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	47	0	0	73	25	25.51	-	-	-	A	14363873	G	A	14363873	2	1	685	1	0	0	0	0	0	0	0	1	16648	962	34	4		4	TRIO	5	14363873	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		14363873	166551387	37	60059										
C5orf42	0	genome.wustl.edu	37	chr5	37169272	37169272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cagtgttatactggcttacaTtcaaatgggatgctggagta	11	6	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	37169272	37169272	T	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.6854	p.N2285T	0.095	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	96	0	0	128	23	15.23	-	-	-	G	37169272	T	G	37169272	3	3	685	1	0	0	0	0	1	0	0	0	2322	1493	52	5	2815	5	C5orf42	5	37169272	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	22805399	37169272	143745988	38	60060										
CMYA5	0	genome.wustl.edu	37	chr5	79030169	79030169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tttcacttatgagagagaatTtgcctttggaacaatcaaaa	7	6	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	79030169	79030169	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.5581	p.L1861V	0.456	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	43	0	0	29	18	38.3	-	-	-	G	79030169	T	G	79030169	3	3	685	1	0	0	0	0	1	0	0	0	3620	1838	64	5	5587	5	CMYA5	5	79030169	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	41860897	79030169	101885091	39	60061										
LOX	0	genome.wustl.edu	37	chr5	121411136	121411136	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttcccaggaatatcttggtcGgctgggtaagaaatctgatg	12	7	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	121411136	121411136	G	A	SNP	LOX	ENST00000231004	human	ensembl	69_37n	-1	known	nonsense	c.841	p.R281*	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOX	HGNC	ENSG00000113083	119	0	0	135	59	30.26	-	-	-	A	121411136	G	A	121411136	4	1	685	1	0	0	0	0	0	1	0	0	8964	1124	39	1	432	1	LOX	5	121411136	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	42380967	121411136	59504124	40	60062										
LSM11	0	genome.wustl.edu	37	chr5	157182067	157182067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggcctctgcaagggaggagtCcaggtcagagctgtcaggga	17	9	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	157182067	157182067	C	G	SNP	LSM11	ENST00000286307	human	ensembl	69_37n	1	known	missense	c.878	p.S293C	1.000	superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM11	HGNC	ENSG00000155858	41	0	0	38	7	15.56	-	-	-	G	157182067	C	G	157182067	3	3	685	1	0	0	0	0	1	0	0	0	9118	855	30	2	892	2	LSM11	5	157182067	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	35770931	157182067	23733193	41	60063										
DOCK2	0	genome.wustl.edu	37	chr5	169494675	169494675	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cctgctgtcatgggaggcttCgccaagtatgagaaggtgag	15	8	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	169494675	169494675	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	silent	c.4629	p.F1543	0.595	pfam_DOCK,superfamily_Cyt_c_dom	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	78	0	0	120	31	20.53	-	-	-	T	169494675	C	T	169494675	2	4	685	1	0	0	0	0	0	0	0	1	4722	883	31	1		1	DOCK2	5	169494675	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	12312608	169494675	11420585	42	60064										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171766090	171766090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aaggacttgtcttgggacttGgcaggcctgagcttactcct	12	10	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	5	171766090	171766090	G	C	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	silent	c.2019	p.A673	0.994	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	50	0	0	70	24	25.53	-	-	-	C	171766090	G	C	171766090	2	2	685	1	0	0	0	0	0	0	0	1	14346	1335	47	4		4	SH3PXD2B	5	171766090	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	2271415	171766090	9149170	43	60065										
NEDD9	0	genome.wustl.edu	37	chr6	11191022	11191022	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cggttgatcccatccaccaaGtcccgagagcctttagcatc	8	15	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	11191022	11191022	G	C	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.1080	p.D360E	0.978	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	24	0	0	11	12	52.17	-	-	-	C	11191022	G	C	11191022	3	2	685	1	0	0	0	0	1	0	0	0	10385	1020	36	4	1436	4	NEDD9	6	11191022	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		11191022	159924045	44	60066										
TFAP2D	0	genome.wustl.edu	37	chr6	50740543	50740543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gcggaaaacttcagaggctgCcgtgaaagagggcaaaacag	14	8	1	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	50740543	50740543	C	T	SNP	TFAP2D	ENST00000008391	human	ensembl	69_37n	1	known	missense	c.1325	p.A442V	0.997	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197	31	0	0	50	7	11.86	-	-	-	T	50740543	C	T	50740543	3	4	685	1	0	0	0	0	1	0	0	0	15885	739	26	4	1355	4	TFAP2D	6	50740543	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	39549521	50740543	120374524	45	60067										
COL12A1	0	genome.wustl.edu	37	chr6	75866154	75866154	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tagacaacacggtagttgacGactttccctggtgctggttt	11	9	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	75866154	75866154	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.3069	p.V1023	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	178	0	0	219	127	36.6	-	-	-	A	75866154	G	A	75866154	2	1	685	1	0	0	0	0	0	0	0	1	3699	1045	37	1		1	COL12A1	6	75866154	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	25125611	75866154	95248913	46	60068										
ROS1	0	genome.wustl.edu	37	chr6	117658501	117658501	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tggtaaaactcattgtatttCcactagaaaaagaagtctcg	7	7	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	117658501	117658501	C	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	nonsense	c.5082	p.W1694*	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	48	0	0	75	28	27.18	-	-	-	T	117658501	C	T	117658501	4	4	685	1	0	0	0	0	0	1	0	0	13617	856	30	2	2013	2	ROS1	6	117658501	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	41792347	117658501	53456566	47	60069										
NUP43	0	genome.wustl.edu	37	chr6	150067641	150067641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atttcctccatgccgaaagcGgccgcagcaggtactgcaaa	10	13	0	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	150067641	150067641	G	A	SNP	NUP43	ENST00000367403	human	ensembl	69_37n	-1	known	silent	c.174	p.A58	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253	47	0	0	26	23	46.94	-	-	-	A	150067641	G	A	150067641	2	1	685	1	0	0	0	0	0	0	0	1	10838	1131	39	1		1	NUP43	6	150067641	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	32409140	150067641	21047426	48	60070										
DLL1	0	genome.wustl.edu	37	chr6	170592574	170592574	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgactgagatgtccttctcaCgctggcagttggccaggttg	13	10	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	6	170592574	170592574	C	T	SNP	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	missense	c.1793	p.R598H	1.000	NULL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	69	0	0	83	62	42.76	-	-	-	T	170592574	C	T	170592574	3	4	685	1	0	0	0	0	1	0	0	0	4602	536	19	1	390	1	DLL1	6	170592574	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	20524933	170592574	522493	49	60071										
ABCB5	0	genome.wustl.edu	37	chr7	20778650	20778650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	agctatggccatcggagaaaCgctcgttttggctcctgaat	11	10	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	7	20778650	20778650	C	T	SNP	ABCB5	ENST00000258738	human	ensembl	69_37n	1	known	missense	c.1577	p.T526M	0.993	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	74	0	0	89	47	34.56	-	-	-	T	20778650	C	T	20778650	3	4	685	1	0	0	0	0	1	0	0	0	44	536	19	1	3043	1	ABCB5	7	20778650	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		20778650	138360013	50	60072										
OR2A12	0	genome.wustl.edu	37	chr7	143792630	143792630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggagagtgtgcactgtcctgGcctcaacttgctggatattt	12	9	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	7	143792630	143792630	G	A	SNP	OR2A12	ENST00000408949	human	ensembl	69_37n	1	known	missense	c.430	p.A144T	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858	115	0	0	179	27	13.11	-	-	-	A	143792630	G	A	143792630	3	1	685	1	0	0	0	0	1	0	0	0	11048	1203	42	4	432	4	OR2A12	7	143792630	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	123013980	143792630	15346033	51	60073										
TEX15	0	genome.wustl.edu	37	chr8	30705357	30705357	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aactgtatcaatgaacatttCtttggcctggggtatgtctt	9	7	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	8	30705357	30705357	C	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	nonsense	c.1177	p.E393*	0.177	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	146	1	0.68	185	29	13.49	-	-	-	A	30705357	C	A	30705357	4	1	685	1	0	0	0	0	0	1	0	0	15874	922	32	2	7208	2	TEX15	8	30705357	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		30705357	115658665	52	60074										
SDR16C5	0	genome.wustl.edu	37	chr8	57228667	57228667	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gcttcccgagccatcttacaTgtttcctcattcccctcctt	4	17	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	8	57228667	57228667	T	G	SNP	SDR16C5	ENST00000303749	human	ensembl	69_37n	-1	known	silent	c.240	p.T80	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786	40	0	0	60	17	21.79	-	-	-	G	57228667	T	G	57228667	2	3	685	1	0	0	0	0	0	0	0	1	14059	1451	51	5		5	SDR16C5	8	57228667	Silent	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	26523310	57228667	89135355	53	60075										
TRPA1	0	genome.wustl.edu	37	chr8	72967727	72967727	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	actactttatcatgtccattCtttgctgccagatggagagg	9	9	2	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	8	72967727	72967727	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.1473	p.K491N	0.917	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	56	0	0	111	22	16.54	-	-	-	A	72967727	C	A	72967727	3	1	685	1	0	0	0	0	1	0	0	0	16673	912	32	2	1950	2	TRPA1	8	72967727	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	15739060	72967727	73396295	54	60076										
PAG1	0	genome.wustl.edu	37	chr8	81892669	81892669	+	Splice_Site	DEL	C	C	-													0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttaaaaagaaacaaaacttaCctcttcttctgtgagagtgg							TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	8	81892669	81892669	C	-	DEL	PAG1	ENST00000220597	human	ensembl	69_37n	-1	known	splice_site_del	c.936+1	e5+1	1.000	-	-	-	no_errors	PAG1	HGNC	ENSG00000076641	54	0	0	69	37	34.58	-	-	-	-	81892669	C	-	81892669	8	5	685	1	0	1	0	1	0	0	1	0	11461	521	18	0	369	0	PAG1	8	81892669	Splice_Site	DEL	C	TCGA-D8-A1JG-01B-11D-A13L-09	8924942	81892669	64471353	55	60077										
MATN2	0	genome.wustl.edu	37	chr8	99028810	99028810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggaccacggttgtgaacattCgtgtgtaagcagtgaagatt	13	6	0	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	8	99028810	99028810	C	T	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	1	known	missense	c.1616	p.S539L	0.001	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	73	0	0	189	24	11.27	-	-	-	T	99028810	C	T	99028810	3	4	685	1	0	0	0	0	1	0	0	0	9405	893	31	1	1654	1	MATN2	8	99028810	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	17136141	99028810	47335212	56	60078										
PIP5K1B	0	genome.wustl.edu	37	chr9	71532631	71532631	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gccatggaatctatccagggTccagggaaatctggagatgg	14	8	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	9	71532631	71532631	T	C	SNP	PIP5K1B	ENST00000478500	human	ensembl	69_37n	1	known	silent	c.1059	p.G353	0.518	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	34	0	0	65	9	12.16	-	-	-	C	71532631	T	C	71532631	2	2	685	1	0	0	0	0	0	0	0	1	12014	1654	58	5		5	PIP5K1B	9	71532631	Silent	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09		71532631	69680800	57	60079										
ACTL7B	0	genome.wustl.edu	37	chr9	111617531	111617531	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcaggtagttggtgaggtcaCccccagcgtagtcggcgcgg	16	11	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	9	111617531	111617531	C	G	SNP	ACTL7B	ENST00000374667	human	ensembl	69_37n	-1	known	missense	c.680	p.G227A	0.991	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7B	HGNC	ENSG00000148156	15	0	0	17	7	29.17	-	-	-	G	111617531	C	G	111617531	3	3	685	1	0	0	0	0	1	0	0	0	201	507	18	4	571	4	ACTL7B	9	111617531	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	40084900	111617531	29595900	58	60080										
OR51A2	0	genome.wustl.edu	37	chr11	4976079	4976079	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tacacaataaacaattggttTcatcagcggaggtacaagta	8	7	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	11	4976079	4976079	T	G	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	missense	c.865	p.K289Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	29	0	0	67	15	18.29	-	-	-	G	4976079	T	G	4976079	3	3	685	1	0	0	0	0	1	0	0	0	11159	1792	62	5	78	5	OR51A2	11	4976079	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09		4976079	130030437	59	60081										
ARNTL	0	genome.wustl.edu	37	chr11	13381930	13381930	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cagaagcaaactacaaaccaActtttctatcagacgatgaa	5	10	2	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	11	13381930	13381930	A	T	SNP	ARNTL	ENST00000403290	human	ensembl	69_37n	1	known	missense	c.418	p.T140S	0.999	superfamily_HLH_DNA-bd,prints_Nuc_translocat	pfam_PAS_fold,pfam_PAS_fold_3,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794	119	0	0	187	38	16.81	-	-	-	T	13381930	A	T	13381930	3	4	685	1	0	0	0	0	1	0	0	0	971	43	2	5	451	5	ARNTL	11	13381930	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	8405851	13381930	121624586	60	60082										
MADD	0	genome.wustl.edu	37	chr11	47345258	47345258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tggtgttgcgtagtaacatcGgaacagtgtatgagcgctgg	15	6	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	11	47345258	47345258	G	A	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.4414	p.G1472R	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	66	0	0	109	18	14.17	-	-	-	A	47345258	G	A	47345258	3	1	685	1	0	0	0	0	1	0	0	0	9219	1117	39	1	4532	1	MADD	11	47345258	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	33963328	47345258	87661258	61	60083										
OR5W2	0	genome.wustl.edu	37	chr11	55682047	55682047	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcagttaatgaggagcaattTtcccagtccattcttccttg	7	10	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	11	55682047	55682047	T	A	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	missense	c.12	p.E4D	0.009	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	10	0	0	25	5	16.67	-	-	-	A	55682047	T	A	55682047	3	1	685	1	0	0	0	0	1	0	0	0	11258	1838	64	5	922	5	OR5W2	11	55682047	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	8336789	55682047	79324469	62	60084										
DRD2	0	genome.wustl.edu	37	chr11	113283314	113283314	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	catctgagtggctttcttctCcttctgctgggagagcttcc	10	12	4	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	11	113283314	113283314	C	G	SNP	DRD2	ENST00000355319	human	ensembl	69_37n	-1	known	missense	c.1108	p.E370Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	67	0	0	126	33	20.75	-	-	-	G	113283314	C	G	113283314	3	3	685	1	0	0	0	0	1	0	0	0	4792	864	30	2	237	2	DRD2	11	113283314	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	57601267	113283314	21723202	63	60085										
NAV3	0	genome.wustl.edu	37	chr12	78443778	78443778	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atattgctttcctaggtgaaGaccctgaaacaagaagaatg	9	7	0	5			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	78443778	78443778	G	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.2029	p.D677Y	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	53	0	0	72	18	20	-	-	-	T	78443778	G	T	78443778	3	4	685	1	0	0	0	0	1	0	0	0	10257	942	33	2	2067	2	NAV3	12	78443778	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		78443778	55408117	64	60086										
P2RX7	0	genome.wustl.edu	37	chr12	121603182	121603182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ctgctctcttgaacagtgccGaaaacttcactgtgctcatc	7	13	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	121603182	121603182	G	A	SNP	P2RX7	ENST00000546057	human	ensembl	69_37n	1	known	missense	c.556	p.E186K	0.998	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X7_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX7	HGNC	ENSG00000089041	53	0	0	92	19	17.12	-	-	-	A	121603182	G	A	121603182	3	1	685	1	0	0	0	0	1	0	0	0	11418	1059	37	1	578	1	P2RX7	12	121603182	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	43159404	121603182	12248713	65	60087										
WDR66	0	genome.wustl.edu	37	chr12	122441598	122441598	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gaagaacttccagacgaaatCactgcagaaatattcgcgac	8	10	1	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	122441598	122441598	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	silent	c.3378	p.I1126	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	110	0	0	281	39	12.19	-	-	-	T	122441598	C	T	122441598	2	4	685	1	0	0	0	0	0	0	0	1	17414	816	29	2		2	WDR66	12	122441598	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	838416	122441598	11410297	66	60088										
CCDC62	0	genome.wustl.edu	37	chr12	123262167	123262167	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cagtgcaccagcaacagcttCtttcatgggaagaggatcgg	12	10	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	123262167	123262167	C	T	SNP	CCDC62	ENST00000253079	human	ensembl	69_37n	1	known	missense	c.166	p.L56F	0.971	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783	50	0	0	78	14	15.05	-	-	-	T	123262167	C	T	123262167	3	4	685	1	0	0	0	0	1	0	0	0	2860	913	32	2	172	2	CCDC62	12	123262167	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	820569	123262167	10589728	67	60089										
SBNO1	0	genome.wustl.edu	37	chr12	123815832	123815832	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	caaataattttcatagatgaTtcctgctatcgtccttcctt	4	10	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	123815832	123815832	T	G	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	missense	c.1000	p.I334L	1.000	pfam_Helicase/UvrB_dom	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	94	0	0	153	20	11.56	-	-	-	G	123815832	T	G	123815832	3	3	685	1	0	0	0	0	1	0	0	0	13949	1493	52	5	3281	5	SBNO1	12	123815832	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	553665	123815832	10036063	68	60090										
TMEM132D	0	genome.wustl.edu	37	chr12	130184703	130184703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcctcctcccggcaaccaccGtgggggggctgaaccagctg	13	16	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	130184703	130184703	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.620	p.T207M	0.072	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	21	0	0	7	8	53.33	-	-	-	A	130184703	G	A	130184703	3	1	685	1	0	0	0	0	1	0	0	0	16142	1145	40	1	2711	1	TMEM132D	12	130184703	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	6368871	130184703	3667192	69	60091										
POLE	0	genome.wustl.edu	37	chr12	133250250	133250250	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggccttggcggccgccttgaGattatgactgcccacaggaa	13	12	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	12	133250250	133250250	G	C	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.1303	p.L435V	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	31	0	0	29	8	21.62	-	-	-	C	133250250	G	C	133250250	3	2	685	1	0	0	0	0	1	0	0	0	12270	942	33	2	5738	2	POLE	12	133250250	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	3065547	133250250	601645	70	60092										
NEK3	0	genome.wustl.edu	37	chr13	52707287	52707287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttcctcaggcattatctgtcGcacaggccttgccatccagc	8	15	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	13	52707287	52707287	G	A	SNP	NEK3	ENST00000452082	human	ensembl	69_37n	-1	known	silent	c.1524	p.C508	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098	34	0	0	45	12	20.69	-	-	-	A	52707287	G	A	52707287	2	1	685	1	0	0	0	0	0	0	0	1	10397	1079	38	1		1	NEK3	13	52707287	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		52707287	62462591	71	60093										
NFATC4	0	genome.wustl.edu	37	chr14	24845639	24845639	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccccatgaagaccctgcttgCgaaactccttacctatcaga	6	15	1	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	24845639	24845639	C	A	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	nonsense	c.2385	p.C795*	0.491	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	29	0	0	39	10	20.41	-	-	-	A	24845639	C	A	24845639	4	1	685	1	0	0	0	0	0	1	0	0	10437	776	27	3	2423	3	NFATC4	14	24845639	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		24845639	82503901	72	60094										
LRFN5	0	genome.wustl.edu	37	chr14	42356316	42356316	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	taataatctagaaaccattcCttgggatgctgttgagaaga	9	6	1	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	42356316	42356316	C	A	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	missense	c.488	p.P163H	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	54	0	0	60	16	21.05	-	-	-	A	42356316	C	A	42356316	3	1	685	1	0	0	0	0	1	0	0	0	9007	681	24	4	490	4	LRFN5	14	42356316	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	17510677	42356316	64993224	73	60095										
FKBP3	0	genome.wustl.edu	37	chr14	45599056	45599056	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atcttcattaagcttcacatTttttacttgctcagacactt	3	10	4	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	45599056	45599056	T	G	SNP	FKBP3	ENST00000216330	human	ensembl	69_37n	-1	known	missense	c.259	p.N87H	0.999	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442	183	0	0	232	47	16.85	-	-	-	G	45599056	T	G	45599056	3	3	685	1	0	0	0	0	1	0	0	0	5955	1841	64	5	435	5	FKBP3	14	45599056	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	3242740	45599056	61750484	74	60096										
PLEKHH1	0	genome.wustl.edu	37	chr14	68042162	68042162	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gctcttgttgggaaaatcttCtactactatcggagccatga	9	9	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	68042162	68042162	C	G	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	missense	c.2142	p.F714L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	52	0	0	45	35	43.75	-	-	-	G	68042162	C	G	68042162	3	3	685	1	0	0	0	0	1	0	0	0	12150	912	32	2	2196	2	PLEKHH1	14	68042162	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	22443106	68042162	39307378	75	60097										
SIPA1L1	0	genome.wustl.edu	37	chr14	72085583	72085583	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggatctccgtacaactaccgAataatttttagaactagtga	7	8	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	72085583	72085583	A	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.1608	p.R536	0.907	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	59	0	0	64	8	11.11	-	-	-	C	72085583	A	C	72085583	2	2	685	1	0	0	0	0	0	0	0	1	14418	233	9	5		5	SIPA1L1	14	72085583	Silent	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	4043421	72085583	35263957	76	60098										
ZC3H14	0	genome.wustl.edu	37	chr14	89038412	89038412	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cttctgataccaacatctttGatagtaacgtgccttcaaac	5	11	3	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	89038412	89038412	G	C	SNP	ZC3H14	ENST00000251038	human	ensembl	69_37n	1	known	missense	c.274	p.D92H	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	70	0	0	61	17	21.79	-	-	-	C	89038412	G	C	89038412	3	2	685	1	0	0	0	0	1	0	0	0	17662	1290	45	2	292	2	ZC3H14	14	89038412	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	16952829	89038412	18311128	77	60099										
DICER1	0	genome.wustl.edu	37	chr14	95582133	95582133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cagtctcaccagtatcaaccGacttggaacacttgtttctc	6	13	3	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	95582133	95582133	G	A	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.1778	p.S593L	0.997	pfscan_Helicase_C	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	45	0	0	90	29	24.37	-	-	-	A	95582133	G	A	95582133	3	1	685	1	0	0	0	0	1	0	0	0	4557	1059	37	1	4058	1	DICER1	14	95582133	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	6543721	95582133	11767407	78	60100										
BCL11B	0	genome.wustl.edu	37	chr14	99697761	99697761	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcacccgagaccgggcgcgcGctgcagcacggcagggggag	18	14	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	14	99697761	99697761	G	A	SNP	BCL11B	ENST00000357195	human	ensembl	69_37n	-1	known	silent	c.561	p.S187	0.968	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152	20	0	0	20	16	44.44	-	-	-	A	99697761	G	A	99697761	2	1	685	1	0	0	0	0	0	0	0	1	1368	1078	38	1		1	BCL11B	14	99697761	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	4115628	99697761	7651779	79	60101										
MGA	0	genome.wustl.edu	37	chr15	42041686	42041686	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ctgttcctagctccattcttCagcatgttgcttcccttcag	6	14	3	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	15	42041686	42041686	C	T	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	nonsense	c.5881	p.Q1961*	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	15	0	0	9	5	35.71	-	-	-	T	42041686	C	T	42041686	4	4	685	1	0	0	0	0	0	1	0	0	9611	827	29	2	5943	2	MGA	15	42041686	Nonsense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		42041686	60489706	80	60102										
C17orf97	0	genome.wustl.edu	37	chr17	262973	262973	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cagagcctgaagagccagccGctttcttcctcctttcatga	8	14	2	4			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	17	262973	262973	G	A	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	silent	c.339	p.P113	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	78	0	0	102	30	22.39	-	-	-	A	262973	G	A	262973	2	1	685	1	0	0	0	0	0	0	0	1	1909	1074	38	1		1	C17orf97	17	262973	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		262973	80932237	81	60103										
TP53	0	genome.wustl.edu	37	chr17	7577073	7577073	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aggctcccctttcttgcggaGattctcttcctctgtgcgcc	9	15	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	17	7577073	7577073	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.865	p.L289F	0.983	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	72	0	0	97	21	17.8	-	-	-	A	7577073	G	A	7577073	3	1	685	1	0	0	0	0	1	0	0	0	16477	942	33	2	421	2	TP53	17	7577073	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	7314100	7577073	73618137	82	60104										
SUZ12	0	genome.wustl.edu	37	chr17	30321730	30321730	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gaacacctatcacacatattCttgtgtgcaggtaggtaaaa	8	8	2	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	17	30321730	30321730	C	G	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	missense	c.1585	p.L529V	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	39	0	0	39	32	45.07	-	-	-	G	30321730	C	G	30321730	3	3	685	1	0	0	0	0	1	0	0	0	15507	913	32	2	1635	2	SUZ12	17	30321730	Missense_Mutation	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	22744657	30321730	50873480	83	60105										
RARA	0	genome.wustl.edu	37	chr17	38508726	38508726	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ctcaccatcgccgaccagatCaccctcctcaaggctgcctg	7	19	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	17	38508726	38508726	C	T	SNP	RARA	ENST00000254066	human	ensembl	69_37n	1	known	silent	c.774	p.I258	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARA	HGNC	ENSG00000131759	38	0	0	37	12	24.49	-	-	-	T	38508726	C	T	38508726	2	4	685	1	0	0	0	0	0	0	0	1	13135	816	29	2		2	RARA	17	38508726	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	8186996	38508726	42686484	84	60106										
CCR7	0	genome.wustl.edu	37	chr17	38721654	38721654	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	atgaagaggctcactcacccAggtccatgacgctctctggg	11	13	3	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	17	38721654	38721654	A	T	SNP	CCR7	ENST00000246657	human	ensembl	69_37n	-1	known	missense	c.8	p.L3Q	0.995	prints_Chemokine_CCR7	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Chemokine_CCR7,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCR11,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CCR7	HGNC	ENSG00000126353	45	0	0	59	13	18.06	-	-	-	T	38721654	A	T	38721654	3	4	685	1	0	0	0	0	1	0	0	0	2975	188	7	5	1140	5	CCR7	17	38721654	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	212928	38721654	42473556	85	60107										
CTAGE1	0	genome.wustl.edu	37	chr18	19995860	19995860	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aggcacctttaaattaccaaGattatctttggtatcatttc	5	8	2	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	18	19995860	19995860	G	T	SNP	CTAGE1	ENST00000391403	human	ensembl	69_37n	-1	known	missense	c.1915	p.L639I	0.383	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710	36	0	0	40	19	32.2	-	-	-	T	19995860	G	T	19995860	3	4	685	1	0	0	0	0	1	0	0	0	4024	942	33	2	326	2	CTAGE1	18	19995860	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		19995860	58081388	86	60108										
NPC1	0	genome.wustl.edu	37	chr18	21140315	21140315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tccagggagcaggaggaggtGggggctggggcttggggcca	23	7	0	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	18	21140315	21140315	G	A	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.761	p.P254L	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	35	0	0	30	23	43.4	-	-	-	A	21140315	G	A	21140315	3	1	685	1	0	0	0	0	1	0	0	0	10642	1348	47	4	3155	4	NPC1	18	21140315	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	1144455	21140315	56936933	87	60109										
PIAS2	0	genome.wustl.edu	37	chr18	44416348	44416349	+	Frame_Shift_Ins	INS	-	-	T													0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	attagactttcataggcagcINSttttttgtcacacacaggac							TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	18	44416348	44416349	-	T	INS	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1174_1173	p.A391fs	1.000:0.998	pfscan_Znf_MIZ	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	82	0	0	51	27	34.62	-	-	-	T	44416349	-	T	44416348	7	5	685	1	0	1	1	0	0	0	0	0	11950	797	28	0	790	0	PIAS2	18	44416348	Frame_Shift_Ins	INS	-	TCGA-D8-A1JG-01B-11D-A13L-09	23276033	44416348	33660900	88	60110										
TXNL1	0	genome.wustl.edu	37	chr18	54281805	54281805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cggggtaggttgataaaaatTtttacatatttagggccctg	11	5	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	18	54281805	54281805	T	G	SNP	TXNL1	ENST00000217515	human	ensembl	69_37n	-1	known	missense	c.585	p.K195N	1.000	pfam_PITH_dom,superfamily_Galactose-bd-like	pfam_PITH_dom,pfam_Thioredoxin_domain,superfamily_Galactose-bd-like,superfamily_Thioredoxin-like_fold	-	no_errors	TXNL1	HGNC	ENSG00000091164	84	0	0	112	14	11.11	-	-	-	G	54281805	T	G	54281805	3	3	685	1	0	0	0	0	1	0	0	0	16901	1838	64	5	296	5	TXNL1	18	54281805	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	9865457	54281805	23795443	89	60111										
TSHZ1	0	genome.wustl.edu	37	chr18	73000318	73000318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tcagaactgcttctacatacAtaagtcatttggagacacac	6	10	3	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	18	73000318	73000318	A	G	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.2956	p.I986V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	76	0	0	44	40	47.62	-	-	-	G	73000318	A	G	73000318	3	3	685	1	0	0	0	0	1	0	0	0	16719	217	8	5	2823	5	TSHZ1	18	73000318	Missense_Mutation	SNP	A	TCGA-D8-A1JG-01B-11D-A13L-09	18718513	73000318	5076930	90	60112										
MAP1S	0	genome.wustl.edu	37	chr19	17836889	17836889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ctgctggagcccccgacctcCgggggcttcctcaggctggg	15	16	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	17836889	17836889	C	T	SNP	MAP1S	ENST00000324096	human	ensembl	69_37n	1	known	silent	c.696	p.S232	0.002	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479	27	0	0	18	9	33.33	-	-	-	T	17836889	C	T	17836889	2	4	685	1	0	0	0	0	0	0	0	1	9305	639	23	1		1	MAP1S	19	17836889	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		17836889	41292094	91	60113										
ZNF99	0	genome.wustl.edu	37	chr19	22941531	22941531	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttcacatttgtagggtttctGtccagtatgaattatctcat	7	7	3	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	22941531	22941531	G	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	nonsense	c.907	p.Q303*	0.860	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	104	0	0	120	25	17.12	-	-	-	A	22941531	G	A	22941531	4	1	685	1	0	0	0	0	0	1	0	0	18297	1386	48	4	2217	4	ZNF99	19	22941531	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	5104642	22941531	36187452	92	60114										
ZNF546	0	genome.wustl.edu	37	chr19	40519819	40519819	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccaaaaattcatgctagagaGaaatcatatgaatgtaagga	8	5	2	3			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	40519819	40519819	G	T	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	missense	c.642	p.E214D	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	39	0	0	49	20	28.99	-	-	-	T	40519819	G	T	40519819	3	4	685	1	0	0	0	0	1	0	0	0	18074	933	33	2	660	2	ZNF546	19	40519819	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	17578288	40519819	18609164	93	60115										
KLK11	0	genome.wustl.edu	37	chr19	51526351	51526351	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ttggagaccacactgacctgGcaggagtccttgcccccttc	10	15	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	51526351	51526351	G	T	SNP	KLK11	ENST00000319756	human	ensembl	69_37n	-1	known	nonsense	c.693	p.C231*	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757	63	0	0	68	29	29.9	-	-	-	T	51526351	G	T	51526351	4	4	685	1	0	0	0	0	0	1	0	0	8452	1195	42	4	163	4	KLK11	19	51526351	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	11006532	51526351	7602632	94	60116										
ZNF534	0	genome.wustl.edu	37	chr19	52941953	52941953	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggaggcgttacaaatgtaatGaatgtggcaaagcatttaga	12	4	0	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	52941953	52941953	G	T	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	nonsense	c.1279	p.E427*	0.052	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	49	0	0	86	13	13.13	-	-	-	T	52941953	G	T	52941953	4	4	685	1	0	0	0	0	0	1	0	0	18069	1291	45	2	1293	2	ZNF534	19	52941953	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	1415602	52941953	6187030	95	60117										
SLC27A5	0	genome.wustl.edu	37	chr19	59009984	59009984	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	acaaacagagggtcaaccacGatccccacattgaagccctc	7	15	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	19	59009984	59009984	G	T	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	silent	c.1971	p.I657	0.004	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	64	0	0	73	26	26.26	-	-	-	T	59009984	G	T	59009984	2	4	685	1	0	0	0	0	0	0	0	1	14618	1048	37	3		3	SLC27A5	19	59009984	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	6068031	59009984	118999	96	60118										
BMP2	0	genome.wustl.edu	37	chr20	6759436	6759436	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	cgccttaagtccagctgtaaGagacaccctttgtacgtgga	10	11	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	20	6759436	6759436	G	C	SNP	BMP2	ENST00000378827	human	ensembl	69_37n	1	known	missense	c.891	p.K297N	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845	60	0	0	108	24	18.18	-	-	-	C	6759436	G	C	6759436	3	2	685	1	0	0	0	0	1	0	0	0	1464	933	33	2	897	2	BMP2	20	6759436	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09		6759436	56266084	97	60119										
NCOA6	0	genome.wustl.edu	37	chr20	33364231	33364231	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	gttccagggctccaccttctGtacttttagcttgctggact	9	12	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	20	33364231	33364231	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	nonsense	c.256	p.Q86*	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	72	0	0	92	45	32.85	-	-	-	A	33364231	G	A	33364231	4	1	685	1	0	0	0	0	0	1	0	0	10305	1386	48	4	5983	4	NCOA6	20	33364231	Nonsense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	26604795	33364231	29661289	98	60120										
EDN3	0	genome.wustl.edu	37	chr20	57899430	57899430	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	aagcaggctttagacctccaCcatccaaagctcatgcccgg	8	15	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	20	57899430	57899430	C	T	SNP	EDN3	ENST00000337938	human	ensembl	69_37n	1	known	silent	c.633	p.H211	0.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205	34	0	0	44	15	25.42	-	-	-	T	57899430	C	T	57899430	2	4	685	1	0	0	0	0	0	0	0	1	4953	506	18	4		4	EDN3	20	57899430	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	24535199	57899430	5126090	99	60121										
CNKSR2	0	genome.wustl.edu	37	chrX	21450849	21450849	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ggccattatgatgggaggacCagccgaaaattgccaaacga	12	9	0	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	X	21450849	21450849	C	T	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	silent	c.348	p.T116	0.987	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	66	0	0	61	33	35.11	-	-	-	T	21450849	C	T	21450849	2	4	685	1	0	0	0	0	0	0	0	1	3637	581	21	4		4	CNKSR2	23	21450849	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09		21450849	133819711	100	60122										
CDK16	0	genome.wustl.edu	37	chrX	47088130	47088130	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	tgctctgctttcccccacagGcaggccagctttccgcgtgg	11	16	1	0			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	X	47088130	47088130	G	T	SNP	CDK16	ENST00000276052	human	ensembl	69_37n	1	known	missense	c.1676	p.G559V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK16	HGNC	ENSG00000102225	49	0	0	66	12	15.19	-	-	-	T	47088130	G	T	47088130	3	4	685	1	0	0	0	0	1	0	0	0	3161	1217	42	4	1754	4	CDK16	23	47088130	Missense_Mutation	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	25637281	47088130	108182430	101	60123										
SHROOM4	0	genome.wustl.edu	37	chrX	50350572	50350572	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccctgtctcgagccctccagGtggccaaagctgaggggttg	14	13	1	1			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	X	50350572	50350572	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.3570	p.H1190	0.002	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	59	0	0	87	17	16.19	-	-	-	A	50350572	G	A	50350572	2	1	685	1	0	0	0	0	0	0	0	1	14385	1252	44	4		4	SHROOM4	23	50350572	Silent	SNP	G	TCGA-D8-A1JG-01B-11D-A13L-09	3262442	50350572	104919988	102	60124										
KLHL13	0	genome.wustl.edu	37	chrX	117053569	117053569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccagcgtgtcttgaaggttgTccatattaagagaaagcttt	10	7	1	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	X	117053569	117053569	T	C	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.494	p.D165G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	50	0	0	44	25	36.23	-	-	-	C	117053569	T	C	117053569	3	2	685	1	0	0	0	0	1	0	0	0	8422	1667	58	5	1498	5	KLHL13	23	117053569	Missense_Mutation	SNP	T	TCGA-D8-A1JG-01B-11D-A13L-09	66702997	117053569	38216991	103	60125										
SLITRK2	0	genome.wustl.edu	37	chrX	144905707	144905707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105769230769231	11	0.583528219817121	1.23672316384181	3.06153846153846	0.721014492753623	1	1	0	ccaaacttgtcagatggaacCgtcttgtcaatgaatcacaa	7	10	4	2			TCGA-D8-A1JG-01B-11D-A13L-09	TCGA-D8-A1JG-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0b15c6f7-8e3e-48ad-a4a2-97d2ada56c44	56cc7ef4-ecf0-41d0-a692-88b352939918	X	144905707	144905707	C	T	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	1	known	silent	c.1764	p.T588	0.050	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	20	0	0	34	9	20.93	-	-	-	T	144905707	C	T	144905707	2	4	685	1	0	0	0	0	0	0	0	1	14832	639	23	1		1	SLITRK2	23	144905707	Silent	SNP	C	TCGA-D8-A1JG-01B-11D-A13L-09	27852138	144905707	10364853	104	60126										
CPT2	0	genome.wustl.edu	37	chr1	53675969	53675969	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gtatggggcctacctggtcaAtgcgtatcccctggatatgt	12	10	1	0			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	1	53675969	53675969	A	G	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	1	known	missense	c.623	p.N208S	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	69	0	0	66	18	21.43	-	-	-	G	53675969	A	G	53675969	3	3	686	1	0	0	0	0	1	0	0	0	3864	101	4	5	637	5	CPT2	1	53675969	Missense_Mutation	SNP	A	TCGA-D8-A1JH-01A-11D-A188-09		53675969	195574652	1	60127										
DCAF6	0	genome.wustl.edu	37	chr1	167935897	167935897	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tctgttggaatgacactggaGaatatattttatctggctca	9	6	3	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	1	167935897	167935897	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.190	p.E64K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	121	0	0	96	26	21.31	-	-	-	A	167935897	G	A	167935897	3	1	686	1	0	0	0	0	1	0	0	0	4306	943	33	2	200	2	DCAF6	1	167935897	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09	114259928	167935897	81314724	2	60128										
CASP8	0	genome.wustl.edu	37	chr2	202123066	202123066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tggagttaggcaggttagggGactcggagactgcgatggtg	19	5	0	1			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	2	202123066	202123066	G	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.112	p.D38Y	0.008	NULL	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	88	0	0	103	30	22.56	-	-	-	T	202123066	G	T	202123066	3	4	686	1	0	0	0	0	1	0	0	0	2702	1174	41	2	114	2	CASP8	2	202123066	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09		202123066	41076307	3	60129										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	49	21	29.58	-	-	-	G	178952085	A	G	178952085	3	3	686	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A1JH-01A-11D-A188-09		178952085	19070345	4	60130										
MAP3K1	0	genome.wustl.edu	37	chr5	56184105	56184105	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tgatgtatggagtgttggctGtgctattatagaaatggctt	13	3	0	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	5	56184105	56184105	G	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.4310	p.C1437S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	135	0	0	180	39	17.81	-	-	-	C	56184105	G	C	56184105	3	2	686	1	0	0	0	0	1	0	0	0	9314	1377	48	4	4384	4	MAP3K1	5	56184105	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09		56184105	124731155	5	60131										
MED23	0	genome.wustl.edu	37	chr6	131925356	131925356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	ccaaagactctatttccataTagaccaataaacgactgtaa	4	10	1	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	6	131925356	131925356	T	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1736	p.Y579C	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	84	0	0	78	22	22	-	-	-	C	131925356	T	C	131925356	3	2	686	1	0	0	0	0	1	0	0	0	9512	1406	49	5	2455	5	MED23	6	131925356	Missense_Mutation	SNP	T	TCGA-D8-A1JH-01A-11D-A188-09		131925356	39189711	6	60132										
DGKB	0	genome.wustl.edu	37	chr7	14880851	14880851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tctgaagttgggaaaattccGaagggctgaggtgggcccat	15	7	1	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	7	14880851	14880851	G	A	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	missense	c.38	p.S13L	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	128	0	0	111	42	27.45	-	-	-	A	14880851	G	A	14880851	3	1	686	1	0	0	0	0	1	0	0	0	4502	1059	37	1	2491	1	DGKB	7	14880851	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09		14880851	144257812	7	60133										
SUPT16H	0	genome.wustl.edu	37	chr14	21836478	21836478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gaagctggagcaaaaagttaTaattttcttgaacttcttga	8	5	2	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	14	21836478	21836478	T	C	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.905	p.Y302C	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	50	0	0	46	14	23.33	-	-	-	C	21836478	T	C	21836478	3	2	686	1	0	0	0	0	1	0	0	0	15487	1406	49	5	2318	5	SUPT16H	14	21836478	Missense_Mutation	SNP	T	TCGA-D8-A1JH-01A-11D-A188-09		21836478	85513062	8	60134										
CCT6B	0	genome.wustl.edu	37	chr17	33281599	33281599	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	cagcttcaaatccttcagctAttattctagggtgcaggccc	8	12	3	0			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	17	33281599	33281599	A	G	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.356	p.I119T	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	124	0	0	96	34	25.95	-	-	-	G	33281599	A	G	33281599	3	3	686	1	0	0	0	0	1	0	0	0	2987	449	16	5	1280	5	CCT6B	17	33281599	Missense_Mutation	SNP	A	TCGA-D8-A1JH-01A-11D-A188-09		33281599	47913611	9	60135										
RTTN	0	genome.wustl.edu	37	chr18	67684697	67684697	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gaagcaaacattatgaaagaTaagaagaggcaataaagggc	11	4	0	4			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	18	67684697	67684697	T	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.6367	p.I2123F	0.992	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	75	0	0	64	14	17.95	-	-	-	A	67684697	T	A	67684697	3	1	686	1	0	0	0	0	1	0	0	0	13823	1406	49	5	329	5	RTTN	18	67684697	Missense_Mutation	SNP	T	TCGA-D8-A1JH-01A-11D-A188-09		67684697	10392551	10	60136										
IRGC	0	genome.wustl.edu	37	chr19	44223848	44223848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	ctggcggcatcagctttggcGctgtctacaccatgctccag	11	14	2	0			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	19	44223848	44223848	G	A	SNP	IRGC	ENST00000244314	human	ensembl	69_37n	1	known	missense	c.1138	p.A380T	0.772	NULL	pfam_Interferon-induced_GTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	15	0	0	29	12	29.27	-	-	-	A	44223848	G	A	44223848	3	1	686	1	0	0	0	0	1	0	0	0	7892	1087	38	1	1140	1	IRGC	19	44223848	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09		44223848	14905135	11	60137										
RBM39	0	genome.wustl.edu	37	chr20	34313042	34313042	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tacagaagactgtccttgcaTctctttcctcaggagttaaa	7	10	2	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	20	34313042	34313042	T	A	SNP	RBM39	ENST00000253363	human	ensembl	69_37n	-1	known	missense	c.452	p.D151V	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051	77	0	0	77	15	16.3	-	-	-	A	34313042	T	A	34313042	3	1	686	1	0	0	0	0	1	0	0	0	13216	1435	50	5	1184	5	RBM39	20	34313042	Missense_Mutation	SNP	T	TCGA-D8-A1JH-01A-11D-A188-09		34313042	28712478	12	60138										
RASD2	0	genome.wustl.edu	37	chr22	35943099	35943099	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tctggcaaccaccccttcccCgccatgcgcaggctgtccat	8	19	1	0			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	22	35943099	35943099	C	T	SNP	RASD2	ENST00000216127	human	ensembl	69_37n	1	known	silent	c.243	p.P81	0.032	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302	26	0	0	41	10	19.61	-	-	-	T	35943099	C	T	35943099	2	4	686	1	0	0	0	0	0	0	0	1	13150	639	23	1		1	RASD2	22	35943099	Silent	SNP	C	TCGA-D8-A1JH-01A-11D-A188-09		35943099	15361467	13	60139										
ATF4	0	genome.wustl.edu	37	chr22	39917837	39917837	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	tggatttgaaggagttcgacTtggatgccctgttgggtata	14	5	0	1			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	22	39917837	39917837	T	C	SNP	ATF4	ENST00000337304	human	ensembl	69_37n	1	known	silent	c.286	p.L96	0.995	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	82	0	0	83	30	26.55	-	-	-	C	39917837	T	C	39917837	2	2	686	1	0	0	0	0	0	0	0	1	1086	1606	56	5		5	ATF4	22	39917837	Silent	SNP	T	TCGA-D8-A1JH-01A-11D-A188-09	3974738	39917837	11386729	14	60140										
CD99	0	genome.wustl.edu	37	chrX	2641396	2641396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gaggcagccacaggaaagaaGgggaagagggtaggtgcacc	18	7	0	2			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	2641396	2641396	G	A	SNP	CD99	ENST00000381192	human	ensembl	69_37n	1	known	missense	c.352	p.G118R	0.001	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	276	0	0	394	118	23.05	-	-	-	A	2641396	G	A	2641396	3	1	686	1	0	0	0	0	1	0	0	0	3079	1000	35	4	378	4	CD99	23	2641396	Missense_Mutation	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09		2641396	152629164	15	60141										
KDM6A	0	genome.wustl.edu	37	chrX	44922686	44922687	+	Frame_Shift_Ins	INS	-	-	A													0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	atgagaccaacaggagttgcINSacaggtacgatctactggaa							TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	44922686	44922687	-	A	INS	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_ins	c.1568_1569	p.Q524fs	1.000:1.000	NULL	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	25	0	0	31	9	22.5	-	-	-	A	44922687	-	A	44922686	7	5	686	1	0	1	1	0	0	0	0	0	8190	710	25	0	1609	0	KDM6A	23	44922686	Frame_Shift_Ins	INS	-	TCGA-D8-A1JH-01A-11D-A188-09	42281290	44922686	110347874	16	60142										
AKAP4	0	genome.wustl.edu	37	chrX	49958929	49958929	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	gaggatgctctgtgatattcGccctctgtgtctcctacttt	9	11	3	1			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	49958929	49958929	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.435	p.G145	0.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	102	0	0	119	41	25.47	-	-	-	A	49958929	G	A	49958929	2	1	686	1	0	0	0	0	0	0	0	1	453	1074	38	1		1	AKAP4	23	49958929	Silent	SNP	G	TCGA-D8-A1JH-01A-11D-A188-09	5036243	49958929	105311631	17	60143										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.0555555555555556	1	0.911624843351391	1.03322259136213	0	1.20542635658915	1	1	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	73	0	0	98	13	11.71	-	-	-	AA	135960147	-	AA	135960146	7	5	686	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-D8-A1JH-01A-11D-A188-09	86001217	135960146	19310414	18	60144										
UBXN11	0	genome.wustl.edu	37	chr1	26608890	26608891	+	Frame_Shift_Del	DEL	CC	CC	-													0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gactggggccgggaccgggaCcgggacagggaccaggactg							TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	26608890	26608891	CC	-	DEL	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	frame_shift_del	c.1463_1462	p.G488fs	0.001:0.001	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	8	0	0	9	4	30.77	-	-	-	-	26608891	CC	-	26608890	7	5	687	1	0	1	0	1	0	0	0	0	17010	507	18	0	103	0	UBXN11	1	26608890	Frame_Shift_Del	DEL	CC	TCGA-D8-A1JI-01A-11D-A13L-09		26608890	222641731	1	60145										
OSBPL9	0	genome.wustl.edu	37	chr1	52222005	52222005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ccttaaggaccagagtaatgCggagaagcacgcagatggaa	13	8	0	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	52222005	52222005	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	69_37n	1	known	missense	c.611	p.A204V	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	78	0	0	72	9	11.11	-	-	-	T	52222005	C	T	52222005	3	4	687	1	0	0	0	0	1	0	0	0	11357	768	27	1	695	1	OSBPL9	1	52222005	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	25613115	52222005	197028616	2	60146										
DMRTB1	0	genome.wustl.edu	37	chr1	53927225	53927225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	agcatgcacccctactgcccGttcccgctgggctacctgga	10	17	0	0			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	53927225	53927225	G	A	SNP	DMRTB1	ENST00000371445	human	ensembl	69_37n	1	known	silent	c.657	p.P219	0.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006	27	0	0	42	16	27.59	-	-	-	A	53927225	G	A	53927225	2	1	687	1	0	0	0	0	0	0	0	1	4626	1132	40	1		1	DMRTB1	1	53927225	Silent	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09	1705220	53927225	195323396	3	60147										
GBP1	0	genome.wustl.edu	37	chr1	89524918	89524918	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tccttttgagcttgattcatCaggattcacagtcaggcagc	9	10	4	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	89524918	89524918	C	T	SNP	GBP1	ENST00000493139	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GBP1	HGNC	ENSG00000117228	71	0	0	66	35	34.65	-	-	-	T	89524918	C	T	89524918	1	4	687	0	1	0	0	0	0	0	0	0	6323	841	29	2		2	GBP1	1	89524918	RNA	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	35597693	89524918	159725703	4	60148										
CCDC19	0	genome.wustl.edu	37	chr1	159858227	159858227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	catgggatgcccatttgattCgctcaaactcctcagggctg	10	12	2	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	159858227	159858227	C	A	SNP	CCDC19	ENST00000368099	human	ensembl	69_37n	-1	known	missense	c.332	p.R111L	0.954	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085	55	0	0	68	56	44.44	-	-	-	A	159858227	C	A	159858227	3	1	687	1	0	0	0	0	1	0	0	0	2821	884	31	3	1359	3	CCDC19	1	159858227	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	70333309	159858227	89392394	5	60149										
C1orf112	0	genome.wustl.edu	37	chr1	169770068	169770068	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tgtttttacctcatatgaacCacctgacattggaacagact	6	10	1	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	169770068	169770068	C	A	SNP	C1orf112	ENST00000286031	human	ensembl	69_37n	1	known	missense	c.22	p.H8N	0.997	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	43	0	0	33	19	35.85	-	-	-	A	169770068	C	A	169770068	3	1	687	1	0	0	0	0	1	0	0	0	2004	594	21	4	24	4	C1orf112	1	169770068	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	9911841	169770068	79480553	6	60150										
NEB	0	genome.wustl.edu	37	chr2	152483718	152483718	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ggagatcagatttgtaaatgTtctggagagattaaacacaa	10	4	2	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	2	152483718	152483718	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.10145	p.N3382S	0.958	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	102	0	0	108	43	28.48	-	-	-	C	152483718	T	C	152483718	3	2	687	1	0	0	0	0	1	0	0	0	10374	1739	60	5	15993	5	NEB	2	152483718	Missense_Mutation	SNP	T	TCGA-D8-A1JI-01A-11D-A13L-09		152483718	90715655	7	60151										
EXOSC7	0	genome.wustl.edu	37	chr3	45030632	45030632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ctgtggttgttaacacctagGaagacctccgtgtggatggc	13	9	0	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	45030632	45030632	G	A	SNP	EXOSC7	ENST00000265564	human	ensembl	69_37n	1	known	missense	c.58	p.E20K	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914	132	0	0	187	23	10.9	-	-	-	A	45030632	G	A	45030632	3	1	687	1	0	0	0	0	1	0	0	0	5356	1188	41	2	64	2	EXOSC7	3	45030632	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09		45030632	152991798	8	60152										
HEG1	0	genome.wustl.edu	37	chr3	124739694	124739694	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	aattcattttctgtggatggTtcaatgaattcctcatcccc	6	10	4	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	124739694	124739694	T	G	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.1194	p.E398D	0.075	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	63	0	0	101	23	18.55	-	-	-	G	124739694	T	G	124739694	3	3	687	1	0	0	0	0	1	0	0	0	7095	1722	60	5	3007	5	HEG1	3	124739694	Missense_Mutation	SNP	T	TCGA-D8-A1JI-01A-11D-A13L-09	79709062	124739694	73282736	9	60153										
CWC27	0	genome.wustl.edu	37	chr5	64081367	64081367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gaagtagacattgatgatgaCgaaagaccacataatccaca	8	8	0	5			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	5	64081367	64081367	C	T	SNP	CWC27	ENST00000381070	human	ensembl	69_37n	1	known	silent	c.456	p.D152	0.588	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	71	0	0	90	13	12.62	-	-	-	T	64081367	C	T	64081367	2	4	687	1	0	0	0	0	0	0	0	1	4101	535	19	1		1	CWC27	5	64081367	Silent	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		64081367	116833893	10	60154										
SLC17A2	0	genome.wustl.edu	37	chr6	25921519	25921520	+	Frame_Shift_Ins	INS	-	-	T													0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	cagcaaaccagcaccaagcaINSttttttttgctccaaatatc							TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	6	25921519	25921520	-	T	INS	SLC17A2	ENST00000377850	human	ensembl	69_37n	-1	known	frame_shift_ins	c.362_361	p.M121fs	0.956:0.558	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337	91	0	0	91	54	37.24	-	-	-	T	25921520	-	T	25921519	7	5	687	1	0	1	1	0	0	0	0	0	14506	217	8	0	980	0	SLC17A2	6	25921519	Frame_Shift_Ins	INS	-	TCGA-D8-A1JI-01A-11D-A13L-09		25921519	145193548	11	60155										
FAM188B	0	genome.wustl.edu	37	chr7	30876302	30876302	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gaggatgagttgataagggaAgaggtcatcctgtcgccagt	15	6	1	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	30876302	30876302	A	G	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	1	known	silent	c.1161	p.E387	0.988	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	107	0	0	122	80	39.6	-	-	-	G	30876302	A	G	30876302	2	3	687	1	0	0	0	0	0	0	0	1	5556	69	3	5		5	FAM188B	7	30876302	Silent	SNP	A	TCGA-D8-A1JI-01A-11D-A13L-09		30876302	128262361	12	60156										
CCDC136	0	genome.wustl.edu	37	chr7	128455958	128455958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gaaagtcccgaagaaaataaCcccctcagactttccgagag	8	12	1	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	128455958	128455958	C	T	SNP	CCDC136	ENST00000494552	human	ensembl	69_37n	1	novel	missense	c.2966	p.T989I	0.976	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC136	HGNC	ENSG00000128596	73	0	0	68	11	13.92	-	-	-	T	128455958	C	T	128455958	3	4	687	1	0	0	0	0	1	0	0	0	2795	506	18	4	3398	4	CCDC136	7	128455958	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	97579656	128455958	30682705	13	60157										
PTEN	0	genome.wustl.edu	37	chr10	89624272	89624273	+	Frame_Shift_Ins	INS	-	-	A													0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tagcagaaacaaaaggagatINSatcaagaggatggattcgac							TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	10	89624272	89624273	-	A	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.46_47	p.Y16fs	1.000:1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	124	0	0	39	84	68.29	-	-	-	A	89624273	-	A	89624272	7	5	687	1	0	1	1	0	0	0	0	0	12818	1406	49	0	48	0	PTEN	10	89624272	Frame_Shift_Ins	INS	-	TCGA-D8-A1JI-01A-11D-A13L-09		89624272	45910475	14	60158										
IRF7	0	genome.wustl.edu	37	chr11	615281	615281	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tgcgggtgcccggccgcggaGagtcagggccggctgcaggg	21	12	1	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	615281	615281	G	A	SNP	IRF7	ENST00000330243	human	ensembl	69_37n	-1	known	missense	c.38	p.S13F	0.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF7	HGNC	ENSG00000185507	8	0	0	4	5	55.56	-	-	-	A	615281	G	A	615281	3	1	687	1	0	0	0	0	1	0	0	0	7889	942	33	2	1548	2	IRF7	11	615281	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09		615281	134391235	15	60159										
KLC2	0	genome.wustl.edu	37	chr11	66033219	66033219	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	acactagaggactgtgccagCcgtaaccgcaagcaggtggg	14	11	0	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66033219	66033219	C	T	SNP	KLC2	ENST00000316924	human	ensembl	69_37n	1	known	silent	c.1428	p.S476	0.992	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	13	0	0	25	9	25.71	-	-	-	T	66033219	C	T	66033219	2	4	687	1	0	0	0	0	0	0	0	1	8387	738	26	4		4	KLC2	11	66033219	Silent	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	65417938	66033219	68973297	16	60160										
RAB1B	0	genome.wustl.edu	37	chr11	66039643	66039643	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ttcaggatgacacgtacacaGagagctacatcagcaccatc	8	12	2	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66039643	66039643	G	A	SNP	RAB1B	ENST00000311481	human	ensembl	69_37n	1	known	missense	c.103	p.E35K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903	48	0	0	257	55	17.63	-	-	-	A	66039643	G	A	66039643	3	1	687	1	0	0	0	0	1	0	0	0	12989	943	33	2	113	2	RAB1B	11	66039643	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09	6424	66039643	68966873	17	60161										
PPFIA1	0	genome.wustl.edu	37	chr11	70224272	70224272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ttcttctatgtcttccccctCtatgcagccaaagaagatgc	6	13	4	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	70224272	70224272	C	T	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	missense	c.3521	p.S1174F	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	83	0	0	347	55	13.68	-	-	-	T	70224272	C	T	70224272	3	4	687	1	0	0	0	0	1	0	0	0	12382	913	32	2	3619	2	PPFIA1	11	70224272	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	4184629	70224272	64782244	18	60162										
TECTA	0	genome.wustl.edu	37	chr11	120996488	120996488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tgtgcagtgtgagggacaatGgcacgctcctctgccaagcc	13	12	1	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	120996488	120996488	G	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.1681	p.G561S	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	41	0	0	14	39	73.58	-	-	-	A	120996488	G	A	120996488	3	1	687	1	0	0	0	0	1	0	0	0	15842	1348	47	4	1707	4	TECTA	11	120996488	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09	50772216	120996488	14010028	19	60163										
SCN8A	0	genome.wustl.edu	37	chr12	52188168	52188168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tccccagaacaaaatccaagGaatcgtctttgattttgtca	6	10	2	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	52188168	52188168	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.4538	p.G1513E	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	90	0	0	106	61	36.53	-	-	-	A	52188168	G	A	52188168	3	1	687	1	0	0	0	0	1	0	0	0	14012	1174	41	2	4636	2	SCN8A	12	52188168	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09		52188168	81663727	20	60164										
PTPRB	0	genome.wustl.edu	37	chr12	70928673	70928673	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	acggactctgagagcatctgCaggatgaggtccccatagta	12	10	2	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	70928673	70928673	C	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.6144	p.L2048	0.998	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	31	0	0	44	22	33.33	-	-	-	A	70928673	C	A	70928673	2	1	687	1	0	0	0	0	0	0	0	1	12879	697	25	4		4	PTPRB	12	70928673	Silent	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09	18740505	70928673	62923222	21	60165										
SPATA13	0	genome.wustl.edu	37	chr13	24860370	24860370	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	agctgatcagtgatggcaacGtggtctgcgcagaagccctg	14	10	2	3			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	13	24860370	24860370	G	T	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	1	known	missense	c.2320	p.V774L	0.962	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	29	0	0	9	23	69.7	-	-	-	T	24860370	G	T	24860370	3	4	687	1	0	0	0	0	1	0	0	0	15091	1145	40	3	2338	3	SPATA13	13	24860370	Missense_Mutation	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09		24860370	90309508	22	60166										
DICER1	0	genome.wustl.edu	37	chr14	95562728	95562728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	ctttgctaggatccagatagCacattgcatcccaagagctg	9	11	0	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	14	95562728	95562728	C	T	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.4529	p.C1510Y	1.000	pfam_RNase_III_dom,superfamily_RNase_III_dom,smart_RNase_III_dom	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	42	0	0	53	41	43.62	-	-	-	T	95562728	C	T	95562728	3	4	687	1	0	0	0	0	1	0	0	0	4557	710	25	4	1259	4	DICER1	14	95562728	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		95562728	11786812	23	60167										
VPS13C	0	genome.wustl.edu	37	chr15	62283988	62283988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	actttttccttaatttttgcCcagaccgaatcacctgaaaa	4	11	1	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	62283988	62283988	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.1367	p.G456E	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	86	0	0	125	51	28.81	-	-	-	T	62283988	C	T	62283988	3	4	687	1	0	0	0	0	1	0	0	0	17288	623	22	4	10198	4	VPS13C	15	62283988	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		62283988	40247404	24	60168										
FURIN	0	genome.wustl.edu	37	chr15	91422703	91422703	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gacttgcggcagaagtgcacGgagtctcacacgggcacctc	13	13	1	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	91422703	91422703	G	A	SNP	FURIN	ENST00000268171	human	ensembl	69_37n	1	known	silent	c.1083	p.T361	0.481	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	26	0	0	24	19	44.19	-	-	-	A	91422703	G	A	91422703	2	1	687	1	0	0	0	0	0	0	0	1	6148	1103	39	1		1	FURIN	15	91422703	Silent	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09	29138715	91422703	11108689	25	60169										
PKD1	0	genome.wustl.edu	37	chr16	2143858	2143858	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	aggccaggaagctggcgctgCtggacaggagccacgcaaca	15	12	0	0			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2143858	2143858	C	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.10775	p.S3592I	0.995	prints_PKD_1	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	23	0	0	12	10	45.45	-	-	-	A	2143858	C	A	2143858	3	1	687	1	0	0	0	0	1	0	0	0	12037	797	28	4	2180	4	PKD1	16	2143858	Missense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		2143858	88210895	26	60170										
TRAF7	0	genome.wustl.edu	37	chr16	2225153	2225153	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tgcagactgcaccatcattgTgagtggggcctacaggcggg	15	10	1	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2225153	2225153	T	C	SNP	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	splice_site	c.1386+2	e14+2	1.000	-	-	-	no_errors	TRAF7	HGNC	ENSG00000131653	70	0	0	59	53	47.32	-	-	-	C	2225153	T	C	2225153	5	2	687	1	0	0	0	0	0	0	1	0	16542	1710	59	5	1442	5	TRAF7	16	2225153	Splice_Site	SNP	T	TCGA-D8-A1JI-01A-11D-A13L-09	81295	2225153	88129600	27	60171										
CDK3	0	genome.wustl.edu	37	chr17	73998015	73998015	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tcgctgctcaaggaactgaaGcaccccaacatcgtccggtg	10	14	1	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	17	73998015	73998015	G	A	SNP	CDK3	ENST00000425876	human	ensembl	69_37n	1	known	silent	c.177	p.K59	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK3	HGNC	ENSG00000250506	49	0	0	68	43	38.74	-	-	-	A	73998015	G	A	73998015	2	1	687	1	0	0	0	0	0	0	0	1	3169	962	34	4		4	CDK3	17	73998015	Silent	SNP	G	TCGA-D8-A1JI-01A-11D-A13L-09		73998015	7197195	28	60172										
ZNF236	0	genome.wustl.edu	37	chr18	74625749	74625749	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	agaagtccagccacctgaagCagcatgtgcggtcgcacacc	11	14	0	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	18	74625749	74625749	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	nonsense	c.2950	p.Q984*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	56	0	0	68	49	41.88	-	-	-	T	74625749	C	T	74625749	4	4	687	1	0	0	0	0	0	1	0	0	17885	711	25	4	3020	4	ZNF236	18	74625749	Nonsense_Mutation	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		74625749	3451499	29	60173										
WFDC2	0	genome.wustl.edu	37	chr20	44108628	44108628	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	aacattaactttccccagctCggcctctgtcgggaccagtg	9	14	1	0			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	20	44108628	44108628	C	T	SNP	WFDC2	ENST00000372676	human	ensembl	69_37n	1	known	silent	c.270	p.L90	0.032	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC2	HGNC	ENSG00000101443	63	0	0	74	43	36.44	-	-	-	T	44108628	C	T	44108628	2	4	687	1	0	0	0	0	0	0	0	1	17449	871	31	1		1	WFDC2	20	44108628	Silent	SNP	C	TCGA-D8-A1JI-01A-11D-A13L-09		44108628	18916892	30	60174										
MAGED1	0	genome.wustl.edu	37	chrX	51638615	51638615	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tcagtctctcaatgccaatgAcctggccaacagcaggccta	8	14	3	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	51638615	51638615	A	T	SNP	MAGED1	ENST00000375695	human	ensembl	69_37n	1	known	missense	c.680	p.D227V	0.939	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	66	0	0	109	15	11.9	-	-	-	T	51638615	A	T	51638615	3	4	687	1	0	0	0	0	1	0	0	0	9254	275	10	5	690	5	MAGED1	23	51638615	Missense_Mutation	SNP	A	TCGA-D8-A1JI-01A-11D-A13L-09		51638615	103631945	31	60175										
LONRF3	0	genome.wustl.edu	37	chrX	118140133	118140133	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	gcgggcatactttttgcttaAaatgcctagaaagatgccta	9	8	0	2			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118140133	118140133	A	G	SNP	LONRF3	ENST00000371628	human	ensembl	69_37n	1	known	missense	c.1465	p.K489E	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF3	HGNC	ENSG00000175556	122	0	0	153	84	35.15	-	-	-	G	118140133	A	G	118140133	3	3	687	1	0	0	0	0	1	0	0	0	8962	15	1	5	1487	5	LONRF3	23	118140133	Missense_Mutation	SNP	A	TCGA-D8-A1JI-01A-11D-A13L-09	66501518	118140133	37130427	32	60176										
SLC25A43	0	genome.wustl.edu	37	chrX	118586830	118586830	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	catttttggttttaacagatAgttccatattttggaattat	6	4	0	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118586830	118586830	A	C	SNP	SLC25A43	ENST00000336249	human	ensembl	69_37n	1	known	missense	c.655	p.S219R	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713	69	0	0	66	11	14.29	-	-	-	C	118586830	A	C	118586830	3	2	687	1	0	0	0	0	1	0	0	0	14597	410	15	5	846	5	SLC25A43	23	118586830	Missense_Mutation	SNP	A	TCGA-D8-A1JI-01A-11D-A13L-09	446697	118586830	36683730	33	60177										
FAM122B	0	genome.wustl.edu	37	chrX	133923130	133923130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.569727348185035	1.53900709219858	NA	1.53900709219858	0.0285714285714286	0.251737451737452	0	tttaccaggctcaagctctcAtcccatgattggcttatctg	7	12	3	1			TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	133923130	133923130	A	G	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	silent	c.318	p.D106	1.000	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	85	0	0	91	80	46.78	-	-	-	G	133923130	A	G	133923130	2	3	687	1	0	0	0	0	0	0	0	1	5460	214	8	5		5	FAM122B	23	133923130	Silent	SNP	A	TCGA-D8-A1JI-01A-11D-A13L-09	15336300	133923130	21347430	34	60178										
PRAMEF10	0	genome.wustl.edu	37	chr1	12954760	12954760	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acacaggtgcactaggcctcTtctgtagtggatccacccaa	9	13	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	12954760	12954760	T	G	SNP	PRAMEF10	ENST00000235347	human	ensembl	69_37n	-1	known	silent	c.523	p.R175	0.000	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	89	0	0	35	6	14.63	-	-	-	G	12954760	T	G	12954760	2	3	688	1	0	0	0	0	0	0	0	1	12503	1617	56	5		5	PRAMEF10	1	12954760	Silent	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09		12954760	236295861	1	60179										
C1orf63	0	genome.wustl.edu	37	chr1	25572975	25572975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ggggttctgctccgcgacctCgtcctggatctgtccctcca	11	16	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	25572975	25572975	C	T	SNP	C1orf63	ENST00000565733	human	ensembl	69_37n	-1	known	missense	c.157	p.E53K	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf63	HGNC	ENSG00000117616	86	0	0	42	8	16	-	-	-	T	25572975	C	T	25572975	3	4	688	1	0	0	0	0	1	0	0	0	2073	871	31	1	408	1	C1orf63	1	25572975	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	12618215	25572975	223677646	2	60180										
MACF1	0	genome.wustl.edu	37	chr1	39895660	39895660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	aactgaccgggtggctgaggGaggtggaggaggagctggca	21	6	0	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	39895660	39895660	G	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.10864	p.E3622K	0.079	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	85	0	0	38	10	20.83	-	-	-	A	39895660	G	A	39895660	3	1	688	1	0	0	0	0	1	0	0	0	9211	1175	41	2	17253	2	MACF1	1	39895660	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	14322685	39895660	209354961	3	60181										
RLF	0	genome.wustl.edu	37	chr1	40697288	40697288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tttggtgtcatagctaaaacGcagcagcatttattttgcct	8	8	1	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	40697288	40697288	G	A	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	silent	c.1047	p.T349	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	273	0	0	120	36	22.93	-	-	-	A	40697288	G	A	40697288	2	1	688	1	0	0	0	0	0	0	0	1	13475	1074	38	1		1	RLF	1	40697288	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	801628	40697288	208553333	4	60182										
JUN	0	genome.wustl.edu	37	chr1	59248409	59248409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cagggcgcgcacgaagccctCggcgaagccctcctgctcat	12	17	1	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	59248409	59248409	C	T	SNP	JUN	ENST00000371222	human	ensembl	69_37n	-1	known	missense	c.334	p.E112K	1.000	pfam_JNK	pfam_JNK,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUN	HGNC	ENSG00000177606	68	0	0	33	4	10.81	-	-	-	T	59248409	C	T	59248409	3	4	688	1	0	0	0	0	1	0	0	0	8023	893	31	1	665	1	JUN	1	59248409	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	18551121	59248409	190002212	5	60183										
SELE	0	genome.wustl.edu	37	chr1	169698645	169698645	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ctacctttacacgttggcttCtcgttgtcccaattcccaga	6	14	1	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	169698645	169698645	C	T	SNP	SELE	ENST00000333360	human	ensembl	69_37n	-1	known	silent	c.885	p.E295	0.022	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908	151	0	0	157	22	12.22	-	-	-	T	169698645	C	T	169698645	2	4	688	1	0	0	0	0	0	0	0	1	14101	912	32	2		2	SELE	1	169698645	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	110450236	169698645	79551976	6	60184										
SMYD2	0	genome.wustl.edu	37	chr1	214498008	214498008	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	actgtaatggcttcacaattGaagatgaagaactttctcat	7	7	2	4			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	1	214498008	214498008	G	A	SNP	SMYD2	ENST00000366957	human	ensembl	69_37n	1	known	missense	c.559	p.E187K	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499	355	1	0.28	445	69	13.42	-	-	-	A	214498008	G	A	214498008	3	1	688	1	0	0	0	0	1	0	0	0	14911	1291	45	2	581	2	SMYD2	1	214498008	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	44799363	214498008	34752613	7	60185										
EHBP1	0	genome.wustl.edu	37	chr2	63217952	63217952	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ctgcccagaaagctgtaactGagagctcagagcaggacatg	12	10	1	3			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	2	63217952	63217952	G	A	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.2923	p.E975K	0.972	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	128	0	0	88	22	20	-	-	-	A	63217952	G	A	63217952	3	1	688	1	0	0	0	0	1	0	0	0	5010	1291	45	2	2989	2	EHBP1	2	63217952	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09		63217952	179981421	8	60186										
GPAT2	0	genome.wustl.edu	37	chr2	96689146	96689146	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ccacagcagctttctgctcaAtcgctgtcgccctgtgtcac	8	16	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	2	96689146	96689146	A	G	SNP	GPAT2	ENST00000359548	human	ensembl	69_37n	-1	known	silent	c.1939	p.L647	0.917	NULL	smart_Acyltransferase	-	no_errors	GPAT2	HGNC	ENSG00000186281	48	0	0	27	11	28.95	-	-	-	G	96689146	A	G	96689146	2	3	688	1	0	0	0	0	0	0	0	1	6639	98	4	5		5	GPAT2	2	96689146	Silent	SNP	A	TCGA-D8-A1JJ-01A-31D-A14K-09	33471194	96689146	146510227	9	60187										
LRP2	0	genome.wustl.edu	37	chr2	170081851	170081851	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gagttctaggattggtagaaTaaaggtttcttgaaatccaa	10	4	2	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	2	170081851	170081851	T	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.5507	p.Y1836C	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	114	0	0	67	17	20.24	-	-	-	C	170081851	T	C	170081851	3	2	688	1	0	0	0	0	1	0	0	0	9022	1406	49	5	8648	5	LRP2	2	170081851	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09	73392705	170081851	73117522	10	60188										
COL4A4	0	genome.wustl.edu	37	chr2	227924262	227924262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	accattcactcctggtgagcCgggagggcctgggggcccaa	15	13	1	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	2	227924262	227924262	C	T	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.2242	p.G748S	0.855	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	50	0	0	43	11	20.37	-	-	-	T	227924262	C	T	227924262	3	4	688	1	0	0	0	0	1	0	0	0	3723	652	23	1	2914	1	COL4A4	2	227924262	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	57842411	227924262	15275111	11	60189										
SNRK	0	genome.wustl.edu	37	chr3	43388879	43388879	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ccccaggaccttgaggatgaCctcacggccactcctttgtc	9	16	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	3	43388879	43388879	C	G	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	1	known	missense	c.1128	p.D376E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	40	0	0	13	14	51.85	-	-	-	G	43388879	C	G	43388879	3	3	688	1	0	0	0	0	1	0	0	0	14940	506	18	4	1146	4	SNRK	3	43388879	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		43388879	154633551	12	60190										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	112	0	0	48	27	36	-	-	-	G	178952085	A	G	178952085	3	3	688	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A1JJ-01A-31D-A14K-09	135563206	178952085	19070345	13	60191										
DLG1	0	genome.wustl.edu	37	chr3	196817851	196817851	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gaactaatactactattcatCatctgctcccgtaaatcatg	4	11	4	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	3	196817851	196817851	C	T	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.1692	p.M564I	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	99	0	0	68	47	40.87	-	-	-	T	196817851	C	T	196817851	3	4	688	1	0	0	0	0	1	0	0	0	4590	826	29	2	1170	2	DLG1	3	196817851	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	17865766	196817851	1204579	14	60192										
ZFR	0	genome.wustl.edu	37	chr5	32403302	32403302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ttagatgtgctattaagagaCgagtttcctgtagtcgtaag	11	5	0	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	5	32403302	32403302	C	T	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	silent	c.1425	p.S475	0.574	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	201	0	0	140	72	33.96	-	-	-	T	32403302	C	T	32403302	2	4	688	1	0	0	0	0	0	0	0	1	17755	523	19	1		1	ZFR	5	32403302	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		32403302	148511958	15	60193										
OSMR	0	genome.wustl.edu	37	chr5	38924582	38924582	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acatcccactccttcactctGagttggaaagattactctac	5	13	3	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	5	38924582	38924582	G	A	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	silent	c.1929	p.L643	0.941	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	108	0	0	76	31	28.97	-	-	-	A	38924582	G	A	38924582	2	1	688	1	0	0	0	0	0	0	0	1	11365	1277	45	2		2	OSMR	5	38924582	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	6521280	38924582	141990678	16	60194										
CCL28	0	genome.wustl.edu	37	chr5	43382081	43382081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tttaccatttttcttggcagCttgcactttcatccactgct	5	12	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	5	43382081	43382081	C	T	SNP	CCL28	ENST00000361115	human	ensembl	69_37n	-1	known	missense	c.265	p.A89T	0.010	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	-	no_errors	CCL28	HGNC	ENSG00000151882	355	0	0	243	89	26.81	-	-	-	T	43382081	C	T	43382081	3	4	688	1	0	0	0	0	1	0	0	0	2927	797	28	4	122	4	CCL28	5	43382081	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	4457499	43382081	137533179	17	60195										
PCDHA2	0	genome.wustl.edu	37	chr5	140175977	140175977	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ccgggctgccacatcttcacGgtgtcagcgtgggatgcgga	15	12	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	5	140175977	140175977	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	silent	c.1428	p.T476	0.311	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	144	0	0	83	65	43.92	-	-	-	A	140175977	G	A	140175977	2	1	688	1	0	0	0	0	0	0	0	1	11597	1103	39	1		1	PCDHA2	5	140175977	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	96793896	140175977	40739283	18	60196										
PCDHB13	0	genome.wustl.edu	37	chr5	140594357	140594357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	agcactggatggtggctctcCgcccagatctggcactgctc	12	14	2	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	5	140594357	140594357	C	T	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	missense	c.662	p.P221L	0.914	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	135	0	0	89	39	30.47	-	-	-	T	140594357	C	T	140594357	3	4	688	1	0	0	0	0	1	0	0	0	11611	652	23	1	664	1	PCDHB13	5	140594357	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	418380	140594357	40320903	19	60197										
ZBTB12	0	genome.wustl.edu	37	chr6	31867836	31867836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gcacgtcgcagtaggagcagCggtagggccgcgctcccgag	17	13	0	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	6	31867836	31867836	C	T	SNP	ZBTB12	ENST00000375527	human	ensembl	69_37n	-1	known	missense	c.1247	p.R416H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB12	HGNC	ENSG00000204366	31	0	0	20	5	20	-	-	-	T	31867836	C	T	31867836	3	4	688	1	0	0	0	0	1	0	0	0	17621	768	27	1	136	1	ZBTB12	6	31867836	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		31867836	139247231	20	60198										
SRF	0	genome.wustl.edu	37	chr6	43141677	43141677	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acctttgccacccgaaaactGcagcccatgatcaccagtga	7	15	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	6	43141677	43141677	G	C	SNP	SRF	ENST00000265354	human	ensembl	69_37n	1	known	silent	c.606	p.L202	1.000	superfamily_TF_MADSbox	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658	285	1	0.35	107	60	35.93	-	-	-	C	43141677	G	C	43141677	2	2	688	1	0	0	0	0	0	0	0	1	15234	1306	46	4		4	SRF	6	43141677	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	11273841	43141677	127973390	21	60199										
EZR	0	genome.wustl.edu	37	chr6	159188099	159188099	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tctcgggcctgggacagctcGctgctcagcgtctgtaacat	12	13	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	6	159188099	159188099	G	A	SNP	EZR	ENST00000337147	human	ensembl	69_37n	-1	known	silent	c.1608	p.S536	0.001	pirsf_ERM,pfam_ERM_C,superfamily_Moesin	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	EZR	HGNC	ENSG00000092820	289	0	0	189	74	28.14	-	-	-	A	159188099	G	A	159188099	2	1	688	1	0	0	0	0	0	0	0	1	5372	1078	38	1		1	EZR	6	159188099	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	116046422	159188099	11926968	22	60200										
GTPBP10	0	genome.wustl.edu	37	chr7	89982152	89982152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tggaaatttcatcgataagcTaagactcttcaccaggggag	10	8	3	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	7	89982152	89982152	T	C	SNP	GTPBP10	ENST00000222511	human	ensembl	69_37n	1	known	missense	c.56	p.L19P	0.998	superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA	pfam_GTP_binding_domain,pfam_GTP1_OBG_dom,pfam_Fe2_transport_prot_B_N,pfam_ProtSyn_GTP-bd,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain	-	no_errors	GTPBP10	HGNC	ENSG00000105793	234	0	0	152	26	14.61	-	-	-	C	89982152	T	C	89982152	3	2	688	1	0	0	0	0	1	0	0	0	6930	1522	53	5	62	5	GTPBP10	7	89982152	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09		89982152	69156511	23	60201										
ZNF425	0	genome.wustl.edu	37	chr7	148800755	148800755	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	actgcaatgtgggtcttgagCgcccccacgtacgtgaagct	12	12	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	7	148800755	148800755	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	silent	c.2208	p.A736	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	53	0	0	21	8	27.59	-	-	-	T	148800755	C	T	148800755	2	4	688	1	0	0	0	0	0	0	0	1	17995	755	27	1		1	ZNF425	7	148800755	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	58818603	148800755	10337908	24	60202										
NPBWR1	0	genome.wustl.edu	37	chr8	53853440	53853440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tccgccagctgataacttgcCgcgcggcagcctgactcccc	10	18	0	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	8	53853440	53853440	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	69_37n	1	known	missense	c.973	p.R325C	0.997	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Neuropept_W_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729	23	0	0	11	12	52.17	-	-	-	T	53853440	C	T	53853440	3	4	688	1	0	0	0	0	1	0	0	0	10640	652	23	1	975	1	NPBWR1	8	53853440	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		53853440	92510582	25	60203										
ZFHX4	0	genome.wustl.edu	37	chr8	77767078	77767078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tgcttgatcatattgcccgcGaagtcgggctgaaaaaaagg	12	8	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	8	77767078	77767078	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.7921	p.E2641K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	34	0	0	27	11	28.95	-	-	-	A	77767078	G	A	77767078	3	1	688	1	0	0	0	0	1	0	0	0	17731	1059	37	1	7955	1	ZFHX4	8	77767078	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	23913638	77767078	68596944	26	60204										
CCNE2	0	genome.wustl.edu	37	chr8	95905064	95905064	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	accttaaatcaggcaaaggtGaaggattaataaaaagattt	8	4	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	8	95905064	95905064	G	A	SNP	CCNE2	ENST00000308108	human	ensembl	69_37n	-1	known	missense	c.299	p.S100L	1.000	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305	52	0	0	65	10	12.99	-	-	-	A	95905064	G	A	95905064	3	1	688	1	0	0	0	0	1	0	0	0	2950	1294	45	2	947	2	CCNE2	8	95905064	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	18137986	95905064	50458958	27	60205										
ATAD2	0	genome.wustl.edu	37	chr8	124371840	124371840	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	agaatctagttgcattggatCaacatcggcaaggcttgctc	10	9	2	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	8	124371840	124371840	C	G	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.1243	p.D415H	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	148	0	0	104	34	24.64	-	-	-	G	124371840	C	G	124371840	3	3	688	1	0	0	0	0	1	0	0	0	1075	826	29	2	3005	2	ATAD2	8	124371840	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	28466776	124371840	21992182	28	60206										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18887969	18887969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	caaaccttagcggtgggtctCaaggggaattcagctgcctt	12	10	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	9	18887969	18887969	C	G	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	1	known	missense	c.493	p.Q165E	0.992	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	121	0	0	44	13	22.81	-	-	-	G	18887969	C	G	18887969	3	3	688	1	0	0	0	0	1	0	0	0	274	827	29	2	4488	2	ADAMTSL1	9	18887969	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		18887969	122325462	29	60207										
GATA3	0	genome.wustl.edu	37	chr10	8106058	8106058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ctgcgggctctatcacaaaaTgaacggacagaaccggcccc	10	14	2	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	10	8106058	8106058	T	G	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	missense	c.881	p.M294R	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	138	0	0	94	37	28.24	-	-	-	G	8106058	T	G	8106058	3	3	688	1	0	0	0	0	1	0	0	0	6305	1464	51	5	891	5	GATA3	10	8106058	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09		8106058	127428689	30	60208										
APBB1IP	0	genome.wustl.edu	37	chr10	26830613	26830613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cgcccactgactattgctttGttttaaaggtatgttataag	8	7	0	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	10	26830613	26830613	G	A	SNP	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	missense	c.1147	p.V383I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	100	0	0	78	28	26.42	-	-	-	A	26830613	G	A	26830613	3	1	688	1	0	0	0	0	1	0	0	0	761	1377	48	4	1181	4	APBB1IP	10	26830613	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	18724555	26830613	108704134	31	60209										
TSPAN14	0	genome.wustl.edu	37	chr10	82249013	82249013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cactattatagatactctaaCgccaaggtcagctgctggta	8	10	2	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	10	82249013	82249013	C	T	SNP	TSPAN14	ENST00000372156	human	ensembl	69_37n	1	known	silent	c.24	p.N8	0.195	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN14	HGNC	ENSG00000108219	205	1	0.49	100	43	30.07	-	-	-	T	82249013	C	T	82249013	2	4	688	1	0	0	0	0	0	0	0	1	16734	535	19	1		1	TSPAN14	10	82249013	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	55418400	82249013	53285734	32	60210										
STK32C	0	genome.wustl.edu	37	chr10	134022579	134022579	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	aagtcttgctggatggcatcGaggcagtcttgaagatagtc	13	7	2	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	10	134022579	134022579	G	A	SNP	STK32C	ENST00000368625	human	ensembl	69_37n	-1	known	silent	c.1317	p.L439	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32C	HGNC	ENSG00000165752	321	0	0	148	28	15.91	-	-	-	A	134022579	G	A	134022579	2	1	688	1	0	0	0	0	0	0	0	1	15390	1045	37	1		1	STK32C	10	134022579	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	51773566	134022579	1512168	33	60211										
HBG2	0	genome.wustl.edu	37	chr11	5275627	5275627	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tttatggcatctcccaaggaAgtcagcaccttcttgccatg	8	12	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	11	5275627	5275627	A	C	SNP	HBG2	ENST00000336906	human	ensembl	69_37n	-1	known	silent	c.210	p.T70	0.000	pfam_Globin,superfamily_Globin-like,prints_Myoglobin,pfscan_Globin	pfam_Globin,superfamily_Globin-like,prints_Haemoglobin_b,prints_Myoglobin,pfscan_Globin	-	no_errors	HBG2	HGNC	ENSG00000196565	520	0	0	325	43	11.68	-	-	-	C	5275627	A	C	5275627	2	2	688	1	0	0	0	0	0	0	0	1	7034	59	3	5		5	HBG2	11	5275627	Silent	SNP	A	TCGA-D8-A1JJ-01A-31D-A14K-09		5275627	129730889	34	60212										
C11orf57	0	genome.wustl.edu	37	chr11	111953459	111953459	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	aaatccaggaaaaagtctctCaaaaaacctgctttattctt	4	9	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	11	111953459	111953459	C	G	SNP	C11orf57	ENST00000393047	human	ensembl	69_37n	1	known	silent	c.645	p.L215	0.987	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776	60	0	0	47	16	25.4	-	-	-	G	111953459	C	G	111953459	2	3	688	1	0	0	0	0	0	0	0	1	1661	813	29	2		2	C11orf57	11	111953459	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	106677832	111953459	23053057	35	60213										
DCTN2	0	genome.wustl.edu	37	chr12	57929272	57929272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acacacacaacaaaccatctCatattctccagattcatatc	1	14	3	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	12	57929272	57929272	C	T	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	missense	c.274	p.E92K	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	209	0	0	103	35	25.36	-	-	-	T	57929272	C	T	57929272	3	4	688	1	0	0	0	0	1	0	0	0	4338	835	29	2	990	2	DCTN2	12	57929272	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		57929272	75922623	36	60214										
FNDC3A	0	genome.wustl.edu	37	chr13	49781423	49781423	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gacactgtggaaagcacaagGacccgacgggcactgagtga	14	10	0	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	13	49781423	49781423	G	A	SNP	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	silent	c.3489	p.R1163	0.999	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	201	0	0	102	59	36.65	-	-	-	A	49781423	G	A	49781423	2	1	688	1	0	0	0	0	0	0	0	1	6015	1165	41	2		2	FNDC3A	13	49781423	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09		49781423	65388455	37	60215										
ARHGEF7	0	genome.wustl.edu	37	chr13	111806290	111806290	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	agcgagagcgagtgcctgagCaacatccgcgagttcctgcg	14	12	0	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	13	111806290	111806290	C	T	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	silent	c.204	p.S68	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	20	0	0	12	5	29.41	-	-	-	T	111806290	C	T	111806290	2	4	688	1	0	0	0	0	0	0	0	1	913	709	25	4		4	ARHGEF7	13	111806290	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	62024867	111806290	3363588	38	60216										
TMED8	0	genome.wustl.edu	37	chr14	77818056	77818056	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ttctggatcggtggcagaagCcaataaagaggtatccttgt	12	7	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	14	77818056	77818056	C	A	SNP	TMED8	ENST00000216468	human	ensembl	69_37n	-1	known	missense	c.157	p.A53S	0.012	NULL	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580	145	0	0	106	26	19.7	-	-	-	A	77818056	C	A	77818056	3	1	688	1	0	0	0	0	1	0	0	0	16106	739	26	4	839	4	TMED8	14	77818056	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		77818056	29531484	39	60217										
HERC2	0	genome.wustl.edu	37	chr15	28515846	28515846	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ttcttgcacacacaccttatGagatgtcggagagctacaca	8	11	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	15	28515846	28515846	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.1252	p.H418Y	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	103	0	0	39	20	33.9	-	-	-	A	28515846	G	A	28515846	3	1	688	1	0	0	0	0	1	0	0	0	7109	1290	45	2	13588	2	HERC2	15	28515846	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09		28515846	74015546	40	60218										
C15orf60	0	genome.wustl.edu	37	chr15	73852248	73852248	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ctgaaaaagctggcgggtttGagaaattaatgctctatata	10	5	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	15	73852248	73852248	G	C	SNP	C15orf60	ENST00000331090	human	ensembl	69_37n	1	known	missense	c.792	p.L264F	0.013	NULL	NULL	-	no_errors	C15orf60	HGNC	ENSG00000183324	73	0	0	43	19	30.65	-	-	-	C	73852248	G	C	73852248	3	2	688	1	0	0	0	0	1	0	0	0	1820	1281	45	2	814	2	C15orf60	15	73852248	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	45336402	73852248	28679144	41	60219										
MYH11	0	genome.wustl.edu	37	chr16	15841442	15841442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tttactttctggccaagtagCcacgacacatcgcctggaag	9	12	1	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	16	15841442	15841442	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.2417	p.G806D	1.000	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	113	0	0	88	27	23.48	-	-	-	T	15841442	C	T	15841442	3	4	688	1	0	0	0	0	1	0	0	0	10103	739	26	4	3649	4	MYH11	16	15841442	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		15841442	74513311	42	60220										
GLG1	0	genome.wustl.edu	37	chr16	74505129	74505129	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tcatgtccttctggtgtttgTtctgtatcagacactccatc	7	11	4	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	16	74505129	74505129	T	C	SNP	GLG1	ENST00000205061	human	ensembl	69_37n	-1	known	missense	c.2171	p.N724S	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	293	0	0	79	76	49.03	-	-	-	C	74505129	T	C	74505129	3	2	688	1	0	0	0	0	1	0	0	0	6488	1725	60	5	1496	5	GLG1	16	74505129	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09	58663687	74505129	15849624	43	60221										
TP53	0	genome.wustl.edu	37	chr17	7578508	7578508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	caacccacagctgcacagggCaggtcttggccagttggcaa	12	13	1	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	17	7578508	7578508	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.422	p.C141Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	101	0	0	18	23	56.1	-	-	-	T	7578508	C	T	7578508	3	4	688	1	0	0	0	0	1	0	0	0	16477	710	25	4	876	4	TP53	17	7578508	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		7578508	73616702	44	60222										
NCOR1	0	genome.wustl.edu	37	chr17	15935743	15935743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cacatgcaatcggtgttggtGgagtactgctgagcatccgc	13	10	0	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	17	15935743	15935743	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.7190	p.P2397L	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	137	0	0	71	15	17.44	-	-	-	A	15935743	G	A	15935743	3	1	688	1	0	0	0	0	1	0	0	0	10307	1348	47	4	136	4	NCOR1	17	15935743	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	8357235	15935743	65259467	45	60223										
RPS6KB1	0	genome.wustl.edu	37	chr17	58013897	58013897	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tggagcccccctttaaacctCtgttggtaagtatacatgaa	8	10	1	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	17	58013897	58013897	C	A	SNP	RPS6KB1	ENST00000225577	human	ensembl	69_37n	1	known	missense	c.1114	p.L372M	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443	74	0	0	77	13	14.44	-	-	-	A	58013897	C	A	58013897	3	1	688	1	0	0	0	0	1	0	0	0	13742	912	32	2	1160	2	RPS6KB1	17	58013897	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	42078154	58013897	23181313	46	60224										
PHLPP1	0	genome.wustl.edu	37	chr18	60646275	60646275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acctgcttcaggtgccagcaGaggccagtgatgagggcatt	14	10	1	3			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	18	60646275	60646275	G	A	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	missense	c.4765	p.E1589K	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	58	0	0	34	8	19.05	-	-	-	A	60646275	G	A	60646275	3	1	688	1	0	0	0	0	1	0	0	0	11928	943	33	2	4831	2	PHLPP1	18	60646275	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09		60646275	17430973	47	60225										
MYO9B	0	genome.wustl.edu	37	chr19	17314024	17314024	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ccgcagtcgtgcgagcagtgCctctcctatatctggctcat	10	14	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	19	17314024	17314024	C	T	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	silent	c.4947	p.C1649	0.991	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	123	0	0	70	11	13.41	-	-	-	T	17314024	C	T	17314024	2	4	688	1	0	0	0	0	0	0	0	1	10157	747	26	4		4	MYO9B	19	17314024	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		17314024	41814959	48	60226										
BCAT2	0	genome.wustl.edu	37	chr19	49299687	49299687	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cagctccctgcagctcacctGgatctccttcagctccttct	6	18	4	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	19	49299687	49299687	G	A	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	nonsense	c.1138	p.Q380*	1.000	superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	133	0	0	38	20	33.9	-	-	-	A	49299687	G	A	49299687	4	1	688	1	0	0	0	0	0	1	0	0	1359	1357	47	4	48	4	BCAT2	19	49299687	Nonsense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	31985663	49299687	9829296	49	60227										
ZNF677	0	genome.wustl.edu	37	chr19	53741204	53741204	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tacacttgtatgatttttctCtaatgtgtgttctcccatac	5	9	2	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	19	53741204	53741204	C	G	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	missense	c.776	p.R259T	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	57	0	0	39	9	18.37	-	-	-	G	53741204	C	G	53741204	3	3	688	1	0	0	0	0	1	0	0	0	18180	913	32	2	982	2	ZNF677	19	53741204	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	4441517	53741204	5387779	50	60228										
KIR2DL4	0	genome.wustl.edu	37	chr19	55324735	55324735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	cagggccctgtgcggaagcaGgatgggagcacgcaggtgtg	19	9	0	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	19	55324735	55324735	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	missense	c.856	p.G286R	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	213	0	0	92	120	56.6	-	-	-	A	55324735	G	A	55324735	3	1	688	1	0	0	0	0	1	0	0	0	8371	1015	35	4		4	KIR2DL4	19	55324735	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	1583531	55324735	3804248	51	60229										
XRN2	0	genome.wustl.edu	37	chr20	21314591	21314591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	acagggaaaatgcaattgacCgtttggttaacatatacaaa	8	6	0	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	20	21314591	21314591	C	T	SNP	XRN2	ENST00000377191	human	ensembl	69_37n	1	known	missense	c.1084	p.R362C	1.000	pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930	264	0	0	196	37	15.88	-	-	-	T	21314591	C	T	21314591	3	4	688	1	0	0	0	0	1	0	0	0	17557	652	23	1	1130	1	XRN2	20	21314591	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		21314591	41710929	52	60230										
CRYZL1	0	genome.wustl.edu	37	chr21	34963501	34963501	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ttgataacttctccatcacaTcctttaagatacgtagctgg	6	10	2	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	21	34963501	34963501	T	A	SNP	CRYZL1	ENST00000381554	human	ensembl	69_37n	-1	known	missense	c.917	p.D306V	1.000	smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZL1	HGNC	ENSG00000205758	178	0	0	109	27	19.85	-	-	-	A	34963501	T	A	34963501	3	1	688	1	0	0	0	0	1	0	0	0	3953	1435	50	5	140	5	CRYZL1	21	34963501	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09		34963501	13166394	53	60231										
SLC5A3	0	genome.wustl.edu	37	chr21	35467531	35467531	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tggacacagcagacattgccAtagtggccctgtattttatc	9	10	0	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	21	35467531	35467531	A	G	SNP	SLC5A3	ENST00000381151	human	ensembl	69_37n	1	known	missense	c.34	p.I12V	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	330	1	0.3	207	103	33.12	-	-	-	G	35467531	A	G	35467531	3	3	688	1	0	0	0	0	1	0	0	0	14755	217	8	5	36	5	SLC5A3	21	35467531	Missense_Mutation	SNP	A	TCGA-D8-A1JJ-01A-31D-A14K-09	504030	35467531	12662364	54	60232										
ZBED4	0	genome.wustl.edu	37	chr22	50278870	50278870	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	ggcttcctgggtgcaagtctGgcaaactctccgtatgccac	11	13	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	22	50278870	50278870	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	silent	c.1560	p.L520	0.999	NULL	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	76	0	0	31	7	18.42	-	-	-	A	50278870	G	A	50278870	2	1	688	1	0	0	0	0	0	0	0	1	17616	1335	47	4		4	ZBED4	22	50278870	Silent	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09		50278870	1025696	55	60233										
REPS2	0	genome.wustl.edu	37	chrX	17024441	17024441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tgcagcacaatctggcctccCggtacggatagagagtatta	11	10	1	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	17024441	17024441	C	T	SNP	REPS2	ENST00000357277	human	ensembl	69_37n	1	known	missense	c.371	p.P124L	1.000	pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891	236	0	0	205	38	15.64	-	-	-	T	17024441	C	T	17024441	3	4	688	1	0	0	0	0	1	0	0	0	13312	652	23	1	377	1	REPS2	23	17024441	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09		17024441	138246119	56	60234										
FAM123B	0	genome.wustl.edu	37	chrX	63410674	63410674	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	aaggaggctgcaagatcttcAtcattgtggaactcaggatt	11	7	4	1			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	63410674	63410674	A	G	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	silent	c.2493	p.D831	0.358	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	88	0	0	30	17	36.17	-	-	-	G	63410674	A	G	63410674	2	3	688	1	0	0	0	0	0	0	0	1	5463	214	8	5		5	FAM123B	23	63410674	Silent	SNP	A	TCGA-D8-A1JJ-01A-31D-A14K-09	46386233	63410674	91859886	57	60235										
HEPH	0	genome.wustl.edu	37	chrX	65417628	65417628	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gctcaggatcctgcttgtctCacttggatgtacttctctgc	9	12	3	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	65417628	65417628	C	T	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	silent	c.1767	p.L589	0.659	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	165	0	0	74	35	32.11	-	-	-	T	65417628	C	T	65417628	2	4	688	1	0	0	0	0	0	0	0	1	7105	813	29	2		2	HEPH	23	65417628	Silent	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	2006954	65417628	89852932	58	60236										
DOCK11	0	genome.wustl.edu	37	chrX	117815153	117815153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	gctgcaaaagctttgctcctCtactgacgtggacatgattc	9	11	1	2			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	117815153	117815153	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.5804	p.S1935F	0.313	pfam_DOCK	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	70	0	0	52	13	20	-	-	-	T	117815153	C	T	117815153	3	4	688	1	0	0	0	0	1	0	0	0	4721	913	32	2	6002	2	DOCK11	23	117815153	Missense_Mutation	SNP	C	TCGA-D8-A1JJ-01A-31D-A14K-09	52397525	117815153	37455407	59	60237										
HTATSF1	0	genome.wustl.edu	37	chrX	135582352	135582352	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	aagaagacagaaatacaaatGtatacgtgtctggtatgtat	9	4	1	3			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	135582352	135582352	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.403	p.V135I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	97	0	0	49	9	15.52	-	-	-	A	135582352	G	A	135582352	3	1	688	1	0	0	0	0	1	0	0	0	7487	1377	48	4	413	4	HTATSF1	23	135582352	Missense_Mutation	SNP	G	TCGA-D8-A1JJ-01A-31D-A14K-09	17767199	135582352	19688208	60	60238										
SLITRK4	0	genome.wustl.edu	37	chrX	142718155	142718155	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.262295081967213	16	0.00218010400026392	2.56754678287619	5.38726333907057	2.07409638554217	0.0844146687267573	0.5224358974359	10	tgggacatagctcttgtttgTtggtttcttttaaaagcctt	9	6	2	0			TCGA-D8-A1JJ-01A-31D-A14K-09	TCGA-D8-A1JJ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	412f96a6-6599-40a6-9dd2-afba8c643910	a022c9a2-3e8a-4377-abed-33cdfbc85b18	X	142718155	142718155	T	C	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.770	p.N257S	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	75	0	0	35	12	25.53	-	-	-	C	142718155	T	C	142718155	3	2	688	1	0	0	0	0	1	0	0	0	14834	1725	60	5	1747	5	SLITRK4	23	142718155	Missense_Mutation	SNP	T	TCGA-D8-A1JJ-01A-31D-A14K-09	7135803	142718155	12552405	61	60239										
CHD5	0	genome.wustl.edu	37	chr1	6169975	6169975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gttgagggccatggcggggtGgttggggtcctgcgtcatgt	20	7	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	6169975	6169975	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.5458	p.H1820Y	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	32	0	0	44	10	18.52	-	-	-	A	6169975	G	A	6169975	3	1	689	1	0	0	0	0	1	0	0	0	3357	1348	47	4	422	4	CHD5	1	6169975	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		6169975	243080646	1	60240										
CHD5	0	genome.wustl.edu	37	chr1	6194863	6194863	+	Frame_Shift_Del	DEL	C	C	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcagcgatacttggttcccgCcccccttggagttcagtgcc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	6194863	6194863	C	-	DEL	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	frame_shift_del	c.2927	p.G976fs	1.000	pfam_SNF2_N	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	96	0	0	152	92	36.36	-	-	-	-	6194863	C	-	6194863	7	5	689	1	0	1	0	1	0	0	0	0	3357	739	26	0	3029	0	CHD5	1	6194863	Frame_Shift_Del	DEL	C	TCGA-D8-A1JK-01A-11D-A13L-09	24888	6194863	243055758	2	60241										
KIF1B	0	genome.wustl.edu	37	chr1	10332316	10332316	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	taggaaggagcaaatattaaTaagtctcttacaactttggg	9	5	1	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	10332316	10332316	T	C	SNP	KIF1B	ENST00000263934	human	ensembl	69_37n	1	known	silent	c.816	p.N272	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	84	0	0	148	29	16.38	-	-	-	C	10332316	T	C	10332316	2	2	689	1	0	0	0	0	0	0	0	1	8336	1403	49	5		5	KIF1B	1	10332316	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	4137453	10332316	238918305	3	60242										
ZMYM4	0	genome.wustl.edu	37	chr1	35851042	35851042	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gttgttttattctcttaataGaaatcagccaaaattacacc	4	8	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	35851042	35851042	G	A	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	splice_site	c.1570-1	e10-1	1.000	-	-	-	no_errors	ZMYM4	HGNC	ENSG00000146463	38	0	0	99	13	11.61	-	-	-	A	35851042	G	A	35851042	5	1	689	1	0	0	0	0	0	0	1	0	17798	956	33	2	1607	2	ZMYM4	1	35851042	Splice_Site	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	25518726	35851042	213399579	4	60243										
KIAA0494	0	genome.wustl.edu	37	chr1	47149000	47149000	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctagaaactcctggtagggaGataggtcttagttgggcagc	14	7	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	47149000	47149000	G	A	SNP	KIAA0494	ENST00000371933	human	ensembl	69_37n	-1	known	silent	c.1284	p.I428	0.989	NULL	pfscan_EF_HAND_2	-	no_errors	KIAA0494	HGNC	ENSG00000159658	48	0	0	123	15	10.79	-	-	-	A	47149000	G	A	47149000	2	1	689	1	0	0	0	0	0	0	0	1	8231	932	33	2		2	KIAA0494	1	47149000	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	11297958	47149000	202101621	5	60244										
LRRC8C	0	genome.wustl.edu	37	chr1	90178422	90178422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	catcactgtggaaatgaaagGcctgaagacagatttggacc	11	8	1	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	90178422	90178422	G	A	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.293	p.G98D	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	43	0	0	60	8	11.76	-	-	-	A	90178422	G	A	90178422	3	1	689	1	0	0	0	0	1	0	0	0	9089	1203	42	4	299	4	LRRC8C	1	90178422	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	43029422	90178422	159072199	6	60245										
CA14	0	genome.wustl.edu	37	chr1	150234993	150234993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctgctgagaggcctcagggcCtggctgtcctgggcatccta	14	13	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	150234993	150234993	C	A	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	missense	c.469	p.L157M	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	53	0	0	84	71	45.81	-	-	-	A	150234993	C	A	150234993	3	1	689	1	0	0	0	0	1	0	0	0	2540	680	24	4	487	4	CA14	1	150234993	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	60056571	150234993	99015628	7	60246										
FLG	0	genome.wustl.edu	37	chr1	152286937	152286937	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cccctgtttctcttgggctcTtggatcttcccttattccct	6	15	3	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	152286937	152286937	T	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.425	p.K142M	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	140	0	0	355	46	11.47	-	-	-	A	152286937	T	A	152286937	3	1	689	1	0	0	0	0	1	0	0	0	5968	1609	56	5	11764	5	FLG	1	152286937	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	2051944	152286937	96963684	8	60247										
ASH1L	0	genome.wustl.edu	37	chr1	155340680	155340680	+	Frame_Shift_Del	DEL	C	C	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttcctcagctcgaaatcgttCtagacattgcacccattcat							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	155340680	155340680	C	-	DEL	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	frame_shift_del	c.6442	p.E2148fs	1.000	smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	82	0	0	151	52	24.3	-	-	-	-	155340680	C	-	155340680	7	5	689	1	0	1	0	1	0	0	0	0	1045	922	32	0	2539	0	ASH1L	1	155340680	Frame_Shift_Del	DEL	C	TCGA-D8-A1JK-01A-11D-A13L-09	3053743	155340680	93909941	9	60248										
YY1AP1	0	genome.wustl.edu	37	chr1	155649273	155649273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctcttctgggccatcatcttCcatgttggagaatcccatct	7	13	5	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	155649273	155649273	C	T	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.466	p.E156K	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	102	0	0	177	82	31.66	-	-	-	T	155649273	C	T	155649273	3	4	689	1	0	0	0	0	1	0	0	0	17605	864	30	2	2232	2	YY1AP1	1	155649273	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	308593	155649273	93601348	10	60249										
NOS1AP	0	genome.wustl.edu	37	chr1	162270466	162270466	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atggacgtgggatgagagcaAgatgctggtgatgcaggacc	17	6	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	162270466	162270466	A	T	SNP	NOS1AP	ENST00000361897	human	ensembl	69_37n	1	known	missense	c.314	p.K105M	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	42	0	0	125	17	11.97	-	-	-	T	162270466	A	T	162270466	3	4	689	1	0	0	0	0	1	0	0	0	10614	72	3	5	328	5	NOS1AP	1	162270466	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	6621193	162270466	86980155	11	60250										
MDM4	0	genome.wustl.edu	37	chr1	204495552	204495553	+	Frame_Shift_Del	DEL	CT	CT	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgcgcaaggtgaaatgttcaCtgttaaagaggtaagccatc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	204495552	204495553	CT	-	DEL	MDM4	ENST00000367182	human	ensembl	69_37n	1	known	frame_shift_del	c.143_144	p.T48fs	1.000:0.948	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625	58	0	0	90	14	13.46	-	-	-	-	204495553	CT	-	204495552	7	5	689	1	0	1	0	1	0	0	0	0	9485	565	20	0	149	0	MDM4	1	204495552	Frame_Shift_Del	DEL	CT	TCGA-D8-A1JK-01A-11D-A13L-09	42225086	204495552	44755069	12	60251										
TMEM81	0	genome.wustl.edu	37	chr1	205053330	205053330	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tggcattgatgataactttcCccacagcttcttgcagcttc	7	12	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	205053330	205053330	C	T	SNP	TMEM81	ENST00000367167	human	ensembl	69_37n	-1	known	missense	c.119	p.G40E	0.991	NULL	pfscan_Ig-like	-	no_errors	TMEM81	HGNC	ENSG00000174529	36	0	0	100	21	17.36	-	-	-	T	205053330	C	T	205053330	3	4	689	1	0	0	0	0	1	0	0	0	16300	623	22	4	652	4	TMEM81	1	205053330	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	557778	205053330	44197291	13	60252										
NVL	0	genome.wustl.edu	37	chr1	224420957	224420957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctgtctcagggcacagatagAagcttctcgtaccaaagcag	10	11	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	224420957	224420957	A	C	SNP	NVL	ENST00000281701	human	ensembl	69_37n	-1	known	missense	c.2401	p.S801A	0.997	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,smart_AAA+_ATPase	-	no_errors	NVL	HGNC	ENSG00000143748	69	0	0	162	31	16.06	-	-	-	C	224420957	A	C	224420957	3	2	689	1	0	0	0	0	1	0	0	0	10853	246	9	5	181	5	NVL	1	224420957	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	19367627	224420957	24829664	14	60253										
FMN2	0	genome.wustl.edu	37	chr1	240370995	240370995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cctccgccccctcttcccggGgcaggcataccccttcctcc	7	23	1	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	240370995	240370995	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.2883	p.G961	0.000	pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	20	0	0	28	7	20	-	-	-	A	240370995	G	A	240370995	2	1	689	1	0	0	0	0	0	0	0	1	5996	1219	43	4		4	FMN2	1	240370995	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	15950038	240370995	8879626	15	60254										
OR2T8	0	genome.wustl.edu	37	chr1	248084570	248084570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	caaaatggcggctgactactTgaccggaagtaaggccatct	11	10	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	1	248084570	248084570	T	C	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.251	p.L84S	0.012	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	40	0	0	97	18	15.65	-	-	-	C	248084570	T	C	248084570	3	2	689	1	0	0	0	0	1	0	0	0	11103	1821	63	5	253	5	OR2T8	1	248084570	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	7713575	248084570	1166051	16	60255										
APOB	0	genome.wustl.edu	37	chr2	21231856	21231856	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tctttgaagtttatctgaacTgatggaatcctcaaatctgt	7	7	4	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	21231856	21231856	T	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.7884	p.S2628	0.003	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	19	0	0	22	17	43.59	-	-	-	C	21231856	T	C	21231856	2	2	689	1	0	0	0	0	0	0	0	1	787	1567	55	5		5	APOB	2	21231856	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09		21231856	221967517	17	60256										
TTC7A	0	genome.wustl.edu	37	chr2	47233105	47233105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cgggtgccggagcaggaggaGgaccggacagtgagcttgca	19	9	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	47233105	47233105	G	A	SNP	TTC7A	ENST00000440051	human	ensembl	69_37n	1	known	missense	c.35	p.R12K	0.932	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTC7A	HGNC	ENSG00000068724	47	0	0	134	20	12.9	-	-	-	A	47233105	G	A	47233105	3	1	689	1	0	0	0	0	1	0	0	0	16809	991	35	4	1144	4	TTC7A	2	47233105	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	26001249	47233105	195966268	18	60257										
KIAA1841	0	genome.wustl.edu	37	chr2	61361346	61361346	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggtttgagcagtgtgctcttGatgacagtgttgctgtgtta	14	5	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	61361346	61361346	G	T	SNP	KIAA1841	ENST00000295031	human	ensembl	69_37n	1	known	missense	c.2103	p.L701F	0.000	NULL	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929	48	0	0	129	35	21.34	-	-	-	T	61361346	G	T	61361346	3	4	689	1	0	0	0	0	1	0	0	0	8313	1281	45	2	2314	2	KIAA1841	2	61361346	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	14128241	61361346	181838027	19	60258										
MXD1	0	genome.wustl.edu	37	chr2	70164405	70164405	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agaaaagccgttcaccaaatCgaccagcttcagcgagagca	9	12	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	70164405	70164405	C	A	SNP	MXD1	ENST00000264444	human	ensembl	69_37n	1	known	silent	c.357	p.I119	0.988	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD1	HGNC	ENSG00000059728	24	0	0	42	25	37.31	-	-	-	A	70164405	C	A	70164405	2	1	689	1	0	0	0	0	0	0	0	1	10071	874	31	3		3	MXD1	2	70164405	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	8803059	70164405	173034968	20	60259										
CTNNA2	0	genome.wustl.edu	37	chr2	80773099	80773099	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgctcaggataacatggacgTcttcaaagaccagtgggaga	12	8	3	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	80773099	80773099	T	C	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1553	p.V518A	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	54	0	0	85	14	14.14	-	-	-	C	80773099	T	C	80773099	3	2	689	1	0	0	0	0	1	0	0	0	4045	1667	58	5	1281	5	CTNNA2	2	80773099	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	10608694	80773099	162426274	21	60260										
NCAPH	0	genome.wustl.edu	37	chr2	97019092	97019092	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ccagatctgcccttccctggCcgggttccagtttacacagt	9	15	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	97019092	97019092	C	G	SNP	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	missense	c.959	p.A320G	0.981	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	63	0	0	117	41	25.95	-	-	-	G	97019092	C	G	97019092	3	3	689	1	0	0	0	0	1	0	0	0	10281	739	26	4	989	4	NCAPH	2	97019092	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	16245993	97019092	146180281	22	60261										
ZRANB3	0	genome.wustl.edu	37	chr2	135988317	135988317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	caatttcaatcttttcgtttCaggttcaacatcactttcat	3	10	6	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	135988317	135988317	C	T	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.1720	p.E574K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	80	0	0	111	45	28.66	-	-	-	T	135988317	C	T	135988317	3	4	689	1	0	0	0	0	1	0	0	0	18317	835	29	2	1555	2	ZRANB3	2	135988317	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	38969225	135988317	107211056	23	60262										
SPOPL	0	genome.wustl.edu	37	chr2	139316724	139316724	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gatttacagactgcagttttTtcgtgagaggacaagaattt	10	5	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	139316724	139316724	T	C	SNP	SPOPL	ENST00000280098	human	ensembl	69_37n	1	known	missense	c.613	p.F205L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228	70	0	0	106	16	13.11	-	-	-	C	139316724	T	C	139316724	3	2	689	1	0	0	0	0	1	0	0	0	15176	1841	64	5	631	5	SPOPL	2	139316724	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	3328407	139316724	103882649	24	60263										
CSRNP3	0	genome.wustl.edu	37	chr2	166451648	166451648	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gctcctctgtgagggaatcaGatgatgaagtttccagcagt	12	8	2	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	166451648	166451648	G	C	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	missense	c.73	p.D25H	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	53	0	0	113	18	13.74	-	-	-	C	166451648	G	C	166451648	3	2	689	1	0	0	0	0	1	0	0	0	3997	942	33	2	75	2	CSRNP3	2	166451648	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	27134924	166451648	76747725	25	60264										
LRP2	0	genome.wustl.edu	37	chr2	170127501	170127501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctgggcgtcaaaatcaatccCgacaaagaaagaaggattcc	9	10	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	170127501	170127501	C	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.2233	p.G745R	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	34	0	0	106	43	28.86	-	-	-	T	170127501	C	T	170127501	3	4	689	1	0	0	0	0	1	0	0	0	9022	652	23	1	11990	1	LRP2	2	170127501	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	3675853	170127501	73071872	26	60265										
TTN	0	genome.wustl.edu	37	chr2	179456033	179456033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cagtgtctctccttaagcagTtcttaatggtaagtactgat	8	8	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	179456033	179456033	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52715	p.N17572S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	68	0	0	143	36	20.11	-	-	-	C	179456033	T	C	179456033	3	2	689	1	0	0	0	0	1	0	0	0	16832	1725	60	5	47796	5	TTN	2	179456033	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	9328532	179456033	63743340	27	60266										
PIKFYVE	0	genome.wustl.edu	37	chr2	209136299	209136299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctctgctaatgatttgcctcGatctcctactagtccttctc	5	14	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	209136299	209136299	G	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.56	p.R19Q	0.590	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	91	0	0	234	29	10.98	-	-	-	A	209136299	G	A	209136299	3	1	689	1	0	0	0	0	1	0	0	0	11998	1058	37	1	58	1	PIKFYVE	2	209136299	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	29680266	209136299	34063074	28	60267										
DOCK10	0	genome.wustl.edu	37	chr2	225698925	225698925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcaaaagaccagtcacatttTtagccagttcctcatgtaca	5	11	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	225698925	225698925	T	G	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.2906	p.K969T	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	86	0	0	177	38	17.67	-	-	-	G	225698925	T	G	225698925	3	3	689	1	0	0	0	0	1	0	0	0	4720	1841	64	5	3778	5	DOCK10	2	225698925	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	16562626	225698925	17500448	29	60268										
GIGYF2	0	genome.wustl.edu	37	chr2	233651995	233651995	+	Frame_Shift_Del	DEL	C	C	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agatggaggttggcgactagCtggatcaaggagggatggag							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	233651995	233651995	C	-	DEL	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	frame_shift_del	c.734	p.A245fs	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	84	0	0	95	44	31.21	-	-	-	-	233651995	C	-	233651995	7	5	689	1	0	1	0	1	0	0	0	0	6430	797	28	0	764	0	GIGYF2	2	233651995	Frame_Shift_Del	DEL	C	TCGA-D8-A1JK-01A-11D-A13L-09	7953070	233651995	9547378	30	60269										
INPP5D	0	genome.wustl.edu	37	chr2	234079743	234079743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cacgtttgccccaacctaccGttttgagagactgactcggg	10	13	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	234079743	234079743	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	1	known	missense	c.1898	p.R633H	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	26	0	0	43	9	17.31	-	-	-	A	234079743	G	A	234079743	3	1	689	1	0	0	0	0	1	0	0	0	7810	1145	40	1	1508	1	INPP5D	2	234079743	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	427748	234079743	9119630	31	60270										
ANO7	0	genome.wustl.edu	37	chr2	242141634	242141634	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgagatcctggccaagacccCgtatggccacgagaagaaaa	11	11	0	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	2	242141634	242141634	C	G	SNP	ANO7	ENST00000274979	human	ensembl	69_37n	1	known	missense	c.800	p.P267R	0.001	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205	29	0	0	73	28	27.72	-	-	-	G	242141634	C	G	242141634	3	3	689	1	0	0	0	0	1	0	0	0	701	652	23	3	902	3	ANO7	2	242141634	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	8061891	242141634	1057739	32	60271										
C3orf19	0	genome.wustl.edu	37	chr3	14708374	14708374	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tatgagaaaagaacttcagcGccagcaatgggaggaagaag	13	6	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	14708374	14708374	G	C	SNP	C3orf19	ENST00000383794	human	ensembl	69_37n	1	known	missense	c.644	p.R215P	1.000	NULL	NULL	-	no_errors	C3orf19	HGNC	ENSG00000154781	44	0	0	54	11	16.92	-	-	-	C	14708374	G	C	14708374	3	2	689	1	0	0	0	0	1	0	0	0	2232	1087	38	3	670	3	C3orf19	3	14708374	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		14708374	183314056	33	60272										
CYP8B1	0	genome.wustl.edu	37	chr3	42916128	42916128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgggctcagggtggatgtcaGggtccatgtgcactgagagg	18	7	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	42916128	42916128	G	A	SNP	CYP8B1	ENST00000316161	human	ensembl	69_37n	-1	known	missense	c.1181	p.P394L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432	19	0	0	30	6	16.67	-	-	-	A	42916128	G	A	42916128	3	1	689	1	0	0	0	0	1	0	0	0	4229	1000	35	4	328	4	CYP8B1	3	42916128	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	28207754	42916128	155106302	34	60273										
ZBTB11	0	genome.wustl.edu	37	chr3	101370304	101370304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgtgccacttgagttccttgGttatgaaactgaagggtgtc	12	7	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	101370304	101370304	G	A	SNP	ZBTB11	ENST00000312938	human	ensembl	69_37n	-1	known	silent	c.2868	p.N956	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422	40	0	0	85	17	16.67	-	-	-	A	101370304	G	A	101370304	2	1	689	1	0	0	0	0	0	0	0	1	17620	1252	44	4		4	ZBTB11	3	101370304	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	58454176	101370304	96652126	35	60274										
ALCAM	0	genome.wustl.edu	37	chr3	105266099	105266102	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggaggttgaaggactaaagaAaagagagtcattgactctca							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	105266099	105266102	AAAG	-	DEL	ALCAM	ENST00000306107	human	ensembl	69_37n	1	known	frame_shift_del	c.1211_1214	p.R405fs	1.000:1.000:1.000:1.000	smart_Ig_sub,pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ALCAM	HGNC	ENSG00000170017	32	0	0	52	18	25.71	-	-	-	-	105266102	AAAG	-	105266099	7	5	689	1	0	1	0	1	0	0	0	0	487	14	1	0	1249	0	ALCAM	3	105266099	Frame_Shift_Del	DEL	AAAG	TCGA-D8-A1JK-01A-11D-A13L-09	3895795	105266099	92756331	36	60275										
MYH15	0	genome.wustl.edu	37	chr3	108159994	108159994	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcagtcagctcagaatttatCtcctcttcttcctccaccct	4	16	5	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	108159994	108159994	C	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	silent	c.2829	p.E943	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	87	0	0	189	36	16	-	-	-	T	108159994	C	T	108159994	2	4	689	1	0	0	0	0	0	0	0	1	10106	912	32	2		2	MYH15	3	108159994	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	2893895	108159994	89862436	37	60276										
WDR52	0	genome.wustl.edu	37	chr3	113138991	113138991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgtcgtccagaagttgtaggTtggctcgctttctacagtca	11	9	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	113138991	113138991	T	G	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.443	p.N148T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	77	0	0	155	22	12.43	-	-	-	G	113138991	T	G	113138991	3	3	689	1	0	0	0	0	1	0	0	0	17401	1725	60	5	5260	5	WDR52	3	113138991	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	4978997	113138991	84883439	38	60277										
SLC12A8	0	genome.wustl.edu	37	chr3	124826747	124826747	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agagcaggtgctcagagcagTggaggccttctgcgccctcc	14	13	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	124826747	124826747	T	C	SNP	SLC12A8	ENST00000423114	human	ensembl	69_37n	-1	known	missense	c.1370	p.H457R	0.651	NULL	pfam_AA-permease_dom,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	SLC12A8	HGNC	ENSG00000221955	23	0	0	37	17	31.48	-	-	-	C	124826747	T	C	124826747	3	2	689	1	0	0	0	0	1	0	0	0	14478	1696	59	5	881	5	SLC12A8	3	124826747	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	11687756	124826747	73195683	39	60278										
KLF15	0	genome.wustl.edu	37	chr3	126071324	126071324	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aggctccatgttctcctccaGaaactcttcaatctcctcca	4	16	4	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	126071324	126071324	G	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	silent	c.442	p.L148	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	11	0	0	23	16	41.03	-	-	-	A	126071324	G	A	126071324	2	1	689	1	0	0	0	0	0	0	0	1	8396	933	33	2		2	KLF15	3	126071324	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	1244577	126071324	71951106	40	60279										
DNAJC13	0	genome.wustl.edu	37	chr3	132245123	132245123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agcagagtgaattagtagcaCaagtaagtgactttctagat	10	5	1	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	132245123	132245123	C	A	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.6379	p.Q2127K	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	40	0	0	87	11	11.22	-	-	-	A	132245123	C	A	132245123	3	1	689	1	0	0	0	0	1	0	0	0	4667	479	17	4	6585	4	DNAJC13	3	132245123	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	6173799	132245123	65777307	41	60280										
TRIM42	0	genome.wustl.edu	37	chr3	140397328	140397328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctgcacagccagcagcaatcTcaactgctactactatgaga	7	13	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	140397328	140397328	T	C	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	missense	c.257	p.L86P	0.002	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	25	0	0	22	10	31.25	-	-	-	C	140397328	T	C	140397328	3	2	689	1	0	0	0	0	1	0	0	0	16613	1551	54	5	259	5	TRIM42	3	140397328	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	8152205	140397328	57625102	42	60281										
SI	0	genome.wustl.edu	37	chr3	164735432	164735432	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aattggaatcccaaagcccaAtaagctggcatgactggatg	10	9	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	164735432	164735432	A	G	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	silent	c.3663	p.Y1221	0.996	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	40	0	0	79	14	15.05	-	-	-	G	164735432	A	G	164735432	2	3	689	1	0	0	0	0	0	0	0	1	14386	108	4	5		5	SI	3	164735432	Silent	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	24338104	164735432	33286998	43	60282										
ZBBX	0	genome.wustl.edu	37	chr3	167086345	167086345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctaactgtactttctccattCgcagttcttgagcatttctg	6	11	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	167086345	167086345	C	T	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.86	p.R29Q	0.055	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	106	0	0	148	76	33.93	-	-	-	T	167086345	C	T	167086345	3	4	689	1	0	0	0	0	1	0	0	0	17613	884	31	1	2384	1	ZBBX	3	167086345	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	2350913	167086345	30936085	44	60283										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	74	25	25.25	-	-	-	A	178936091	G	A	178936091	3	1	689	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	11849746	178936091	19086339	45	60284										
C3orf70	0	genome.wustl.edu	37	chr3	184801224	184801224	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggaggctggaagacagatgcAaatttcaaaaagtgttcggt	13	5	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	184801224	184801224	A	T	SNP	C3orf70	ENST00000335012	human	ensembl	69_37n	-1	known	missense	c.324	p.F108L	0.842	NULL	NULL	-	no_errors	C3orf70	HGNC	ENSG00000187068	26	0	0	41	17	29.31	-	-	-	T	184801224	A	T	184801224	3	4	689	1	0	0	0	0	1	0	0	0	2262	127	5	5	432	5	C3orf70	3	184801224	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	5865133	184801224	13221206	46	60285										
IL1RAP	0	genome.wustl.edu	37	chr3	190362053	190362053	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ccagtgccagctccaagataCacagtggaactggcttgtgg	12	11	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	190362053	190362053	C	A	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	nonsense	c.1068	p.Y356*	1.000	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	94	0	0	181	78	30	-	-	-	A	190362053	C	A	190362053	4	1	689	1	0	0	0	0	0	1	0	0	7714	489	17	4	1118	4	IL1RAP	3	190362053	Nonsense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	5560829	190362053	7660377	47	60286										
PIGZ	0	genome.wustl.edu	37	chr3	196675068	196675068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gaggtagagggggaccacagCaaaggccagaaaggtgggcc	18	8	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	3	196675068	196675068	C	T	SNP	PIGZ	ENST00000412723	human	ensembl	69_37n	-1	known	missense	c.700	p.A234T	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227	24	0	0	24	9	27.27	-	-	-	T	196675068	C	T	196675068	3	4	689	1	0	0	0	0	1	0	0	0	11979	710	25	4	1043	4	PIGZ	3	196675068	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	6313015	196675068	1347362	48	60287										
CHIC2	0	genome.wustl.edu	37	chr4	54930430	54930430	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cctccagggcccgctcctcgTcctcctcttcctcatagatt	6	19	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	54930430	54930430	T	G	SNP	CHIC2	ENST00000263921	human	ensembl	69_37n	-1	known	missense	c.38	p.D13A	1.000	NULL	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC2	HGNC	ENSG00000109220	27	0	0	20	8	28.57	-	-	-	G	54930430	T	G	54930430	3	3	689	1	0	0	0	0	1	0	0	0	3373	1667	58	5	483	5	CHIC2	4	54930430	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09		54930430	136223846	49	60288										
AMBN	0	genome.wustl.edu	37	chr4	71462727	71462727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttcattcagttctttcctcaGcaatctggaacaccgggtat	7	11	5	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	71462727	71462727	G	T	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.96	p.Q32H	0.996	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	92	0	0	176	39	18.14	-	-	-	T	71462727	G	T	71462727	3	4	689	1	0	0	0	0	1	0	0	0	563	962	34	4	106	4	AMBN	4	71462727	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	16532297	71462727	119691549	50	60289										
RUFY3	0	genome.wustl.edu	37	chr4	71650590	71650590	+	Missense_Mutation	SNP	A	A	T													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttaaaagaagagacacaattAcgattggtaaactatgctta							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	71650590	71650590	A	T	SNP	RUFY3	ENST00000417478	human	ensembl	69_37n	1	known	missense	c.1245	p.L415F	0.896	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	39	0	0	79	18	18.37	-	-	-	T	71650590	A	T	71650590	3	4	689	1	0	0	0	0	1	0	0	0	13826	388	14	5	1465	5	RUFY3	4	71650590	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	187863	71650590	119503686	51	60290	447	2								
RUFY3	0	genome.wustl.edu	37	chr4	71650591	71650591	+	Silent	SNP	C	C	A													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	taaaagaagagacacaattaCgattggtaaactatgcttaa							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	71650591	71650591	C	A	SNP	RUFY3	ENST00000417478	human	ensembl	69_37n	1	known	silent	c.1246	p.R416	0.997	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	39	0	0	81	17	17.35	-	-	-	A	71650591	C	A	71650591	2	1	689	1	0	0	0	0	0	0	0	1	13826	528	19	3		3	RUFY3	4	71650591	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	1	71650591	119503685	52	60291	447	2								
KIAA1109	0	genome.wustl.edu	37	chr4	123193324	123193324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tacttataaaggagttcggaGccctacagagccaacatgta	9	9	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	123193324	123193324	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.8210	p.S2737N	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	36	0	0	68	8	10.53	-	-	-	A	123193324	G	A	123193324	3	1	689	1	0	0	0	0	1	0	0	0	8260	971	34	4	8392	4	KIAA1109	4	123193324	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	51542733	123193324	67960952	53	60292										
FAT4	0	genome.wustl.edu	37	chr4	126384757	126384757	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agtcaattactgtgaatgcaAcccctgctttaatggtggtt	9	8	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	126384757	126384757	A	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.11834	p.N3945T	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	168	1	0.59	195	104	34.78	-	-	-	C	126384757	A	C	126384757	3	2	689	1	0	0	0	0	1	0	0	0	5738	43	2	5	11872	5	FAT4	4	126384757	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	3191433	126384757	64769519	54	60293										
SLC10A7	0	genome.wustl.edu	37	chr4	147431152	147431152	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggaagaatgcaagagtaaagAtctgaataaaaagatgcagt	11	3	1	5			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	4	147431152	147431152	A	G	SNP	SLC10A7	ENST00000394062	human	ensembl	69_37n	-1	known	missense	c.233	p.I78T	1.000	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	-	no_errors	SLC10A7	HGNC	ENSG00000120519	47	0	0	59	10	14.49	-	-	-	G	147431152	A	G	147431152	3	3	689	1	0	0	0	0	1	0	0	0	14468	333	12	5	874	5	SLC10A7	4	147431152	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	21046395	147431152	43723124	55	60294										
C7	0	genome.wustl.edu	37	chr5	40972659	40972659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgtggctccagccttaagtgGagtcctgagatgaagaatgc	13	8	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	5	40972659	40972659	G	C	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.2037	p.W679C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	55	0	0	108	68	38.64	-	-	-	C	40972659	G	C	40972659	3	2	689	1	0	0	0	0	1	0	0	0	2398	1183	41	2	2095	2	C7	5	40972659	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		40972659	139942601	56	60295										
CCDC125	0	genome.wustl.edu	37	chr5	68616155	68616155	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttggaatactgaaaactcgcTtcatttctttcttctccctt	4	11	4	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	5	68616155	68616155	T	C	SNP	CCDC125	ENST00000396496	human	ensembl	69_37n	-1	known	silent	c.213	p.E71	0.000	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	61	0	0	67	40	37.38	-	-	-	C	68616155	T	C	68616155	2	2	689	1	0	0	0	0	0	0	0	1	2786	1606	56	5		5	CCDC125	5	68616155	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	27643496	68616155	112299105	57	60296										
APC	0	genome.wustl.edu	37	chr5	112175102	112175102	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tagaagatactccaatatgtTtttcaagatgtagttcatta	6	5	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	5	112175102	112175102	T	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.3811	p.F1271I	1.000	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	25	0	0	42	9	17.65	-	-	-	A	112175102	T	A	112175102	3	1	689	1	0	0	0	0	1	0	0	0	764	1841	64	5	3869	5	APC	5	112175102	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	43558947	112175102	68740158	58	60297										
NMUR2	0	genome.wustl.edu	37	chr5	151784140	151784140	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atggatgctggtgttgggcaGggagaagagcacggagaagc	19	5	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	5	151784140	151784140	G	A	SNP	NMUR2	ENST00000255262	human	ensembl	69_37n	-1	known	silent	c.535	p.L179	0.906	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911	32	0	0	56	13	18.84	-	-	-	A	151784140	G	A	151784140	2	1	689	1	0	0	0	0	0	0	0	1	10579	991	35	4		4	NMUR2	5	151784140	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	39609038	151784140	29131120	59	60298										
KIF4B	0	genome.wustl.edu	37	chr5	154394120	154394120	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	caagaattgcagctttcgctCcaagctgcatcttgtagatc	8	11	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	5	154394120	154394120	C	A	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.701	p.S234Y	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	61	0	0	104	23	18.11	-	-	-	A	154394120	C	A	154394120	3	1	689	1	0	0	0	0	1	0	0	0	8356	855	30	2	703	2	KIF4B	5	154394120	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	2609980	154394120	26521140	60	60299										
WRNIP1	0	genome.wustl.edu	37	chr6	2769106	2769106	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgagattcatcggttcaataAatctcagcaggtatattaac	7	7	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	2769106	2769106	A	C	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	1	known	missense	c.1004	p.K335T	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_AAA+_ATPase	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	20	0	0	68	13	16.05	-	-	-	C	2769106	A	C	2769106	3	2	689	1	0	0	0	0	1	0	0	0	17500	14	1	5	1010	5	WRNIP1	6	2769106	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09		2769106	168345961	61	60300										
ITPR3	0	genome.wustl.edu	37	chr6	33654276	33654276	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ccctgtgcaagtaccgcatgGatctggtgctgcagctcaag	12	12	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	33654276	33654276	G	C	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.5959	p.D1987H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	42	0	0	112	26	18.84	-	-	-	C	33654276	G	C	33654276	3	2	689	1	0	0	0	0	1	0	0	0	7976	1174	41	2	6129	2	ITPR3	6	33654276	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	30885170	33654276	137460791	62	60301										
MED20	0	genome.wustl.edu	37	chr6	41877006	41877006	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctattttcaccaaggtcttaCctccacagagatgccccggg	8	14	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	41877006	41877006	C	A	SNP	MED20	ENST00000265350	human	ensembl	69_37n	-1	known	splice_site	c.423+1	e3+1	1.000	-	-	-	no_errors	MED20	HGNC	ENSG00000124641	23	0	0	35	13	27.08	-	-	-	A	41877006	C	A	41877006	5	1	689	1	0	0	0	0	0	0	1	0	9509	521	18	4	222	4	MED20	6	41877006	Splice_Site	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	8222730	41877006	129238061	63	60302										
GPR115	0	genome.wustl.edu	37	chr6	47686162	47686162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aaccaatggatctaaattaaTgaatcgtcaaggatgaaatg	8	5	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	47686162	47686162	T	C	SNP	GPR115	ENST00000371220	human	ensembl	69_37n	1	known	missense	c.2243	p.M748T	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR115	HGNC	ENSG00000153294	71	0	0	150	34	18.48	-	-	-	C	47686162	T	C	47686162	3	2	689	1	0	0	0	0	1	0	0	0	6682	1464	51	5	2102	5	GPR115	6	47686162	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	5809156	47686162	123428905	64	60303										
DST	0	genome.wustl.edu	37	chr6	56471604	56471604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atcataaaaatcatcatcacTatcagtgtctgttcctgtgt	5	9	6	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	56471604	56471604	T	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.7723	p.S2575R	0.187	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	19	0	0	82	22	21.15	-	-	-	G	56471604	T	G	56471604	3	3	689	1	0	0	0	0	1	0	0	0	4818	1537	53	5		5	DST	6	56471604	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	8785442	56471604	114643463	65	60304										
EYS	0	genome.wustl.edu	37	chr6	66115227	66115228	+	Frame_Shift_Del	DEL	AC	AC	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttttccaaaaaagcagagaaAcacaaggttttgctgacacc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	66115227	66115228	AC	-	DEL	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	frame_shift_del	c.896_895	p.V299fs	0.000:0.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	47	0	0	129	17	11.64	-	-	-	-	66115228	AC	-	66115227	7	5	689	1	0	1	0	1	0	0	0	0	5369	43	2	0	8652	0	EYS	6	66115227	Frame_Shift_Del	DEL	AC	TCGA-D8-A1JK-01A-11D-A13L-09	9643623	66115227	104999840	66	60305										
ASCC3	0	genome.wustl.edu	37	chr6	101075523	101075523	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	acagtaatgttgacctggaaAgccttgaatgtgaacttcca	9	8	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	101075523	101075523	A	T	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.4585	p.F1529I	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	53	0	0	75	11	12.79	-	-	-	T	101075523	A	T	101075523	3	4	689	1	0	0	0	0	1	0	0	0	1037	72	3	5	2079	5	ASCC3	6	101075523	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	34960296	101075523	70039544	67	60306										
SYTL3	0	genome.wustl.edu	37	chr6	159103965	159103965	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcattttttcaggaatgtcaAaataaaaactggagaatggt	8	4	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	159103965	159103965	A	G	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	missense	c.338	p.K113R	1.000	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	68	0	0	79	24	23.3	-	-	-	G	159103965	A	G	159103965	3	3	689	1	0	0	0	0	1	0	0	0	15576	14	1	5	348	5	SYTL3	6	159103965	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	58028442	159103965	12011102	68	60307										
FNDC1	0	genome.wustl.edu	37	chr6	159660774	159660774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cactacaaccccgaggcccaCcactgccaccacccgccgca	6	23	0	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	6	159660774	159660774	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.4406	p.T1469I	0.308	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	45	0	0	145	31	17.61	-	-	-	T	159660774	C	T	159660774	3	4	689	1	0	0	0	0	1	0	0	0	6014	507	18	4	4460	4	FNDC1	6	159660774	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	556809	159660774	11454293	69	60308										
SEPT14	0	genome.wustl.edu	37	chr7	55912240	55912240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cttctttgtctatttgatcaCcataccctactgtctccaca	3	14	4	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	7	55912240	55912240	C	T	SNP	SEPT14	ENST00000388975	human	ensembl	69_37n	-1	known	missense	c.347	p.G116D	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	61	0	0	134	57	29.84	-	-	-	T	55912240	C	T	55912240	3	4	689	1	0	0	0	0	1	0	0	0	14151	507	18	4	979	4	SEPT14	7	55912240	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09		55912240	103226423	70	60309										
PLXNA4	0	genome.wustl.edu	37	chr7	132192921	132192921	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gaacagcttgtcatccaggtTgctgtaggagacgatcactc	11	10	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	7	132192921	132192921	T	C	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.532	p.N178D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	50	0	0	92	11	10.68	-	-	-	C	132192921	T	C	132192921	3	2	689	1	0	0	0	0	1	0	0	0	12196	1812	63	5	5590	5	PLXNA4	7	132192921	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	76280681	132192921	26945742	71	60310										
ADCK2	0	genome.wustl.edu	37	chr7	140373340	140373340	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gttctgagtcggcgaagggtCcgctgcagcggggcggctgg	20	10	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	7	140373340	140373340	C	T	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	1	known	silent	c.210	p.V70	0.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	12	0	0	6	9	60	-	-	-	T	140373340	C	T	140373340	2	4	689	1	0	0	0	0	0	0	0	1	289	842	30	2		2	ADCK2	7	140373340	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	8180419	140373340	18765323	72	60311										
CSMD1	0	genome.wustl.edu	37	chr8	3265702	3265702	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	attcctctggataatttggtGacagaataatcccagatgat	8	7	1	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	3265702	3265702	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	nonsense	c.1793	p.S598*	0.999	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	12	0	0	15	7	31.82	-	-	-	T	3265702	G	T	3265702	4	4	689	1	0	0	0	0	0	1	0	0	3976	1294	45	2	9132	2	CSMD1	8	3265702	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		3265702	143098320	73	60312										
ADAM9	0	genome.wustl.edu	37	chr8	38961171	38961171	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcatctcagggaaacttaatTcctgcccgtcctgctcctgc	7	15	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	38961171	38961171	T	A	SNP	ADAM9	ENST00000487273	human	ensembl	69_37n	1	known	silent	c.2412	p.I804	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM9	HGNC	ENSG00000168615	93	0	0	170	256	59.67	-	-	-	A	38961171	T	A	38961171	2	1	689	1	0	0	0	0	0	0	0	1	253	1771	62	5		5	ADAM9	8	38961171	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	35695469	38961171	107402851	74	60313										
RB1CC1	0	genome.wustl.edu	37	chr8	53548623	53548623	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcttcagacaacatatgaatAttttctctaaaagtgagaat	5	6	3	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	53548623	53548623	A	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.4344	p.N1448	0.430	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	44	0	0	72	42	36.84	-	-	-	G	53548623	A	G	53548623	2	3	689	1	0	0	0	0	0	0	0	1	13182	446	16	5		5	RB1CC1	8	53548623	Silent	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	14587452	53548623	92815399	75	60314										
ARMC1	0	genome.wustl.edu	37	chr8	66525619	66525620	+	Frame_Shift_Del	DEL	TG	TG	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	catattggaggactgaagaaTgtcatagatttcagaggcca							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	66525619	66525620	TG	-	DEL	ARMC1	ENST00000276569	human	ensembl	69_37n	-1	known	frame_shift_del	c.325_324	p.I109fs	1.000:1.000	pirsf_UCP013899_metal-bd	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_HeavyMe-assoc_HMA,pirsf_UCP013899_metal-bd	-	no_errors	ARMC1	HGNC	ENSG00000104442	84	0	0	111	78	40.21	-	-	-	-	66525620	TG	-	66525619	7	5	689	1	0	1	0	1	0	0	0	0	953	1464	51	0	539	0	ARMC1	8	66525619	Frame_Shift_Del	DEL	TG	TCGA-D8-A1JK-01A-11D-A13L-09	12976996	66525619	79838403	76	60315										
ZFHX4	0	genome.wustl.edu	37	chr8	77761899	77761899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcatctccaactgcatctgaCgcatttgcacagtgtgtctc	8	13	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	77761899	77761899	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.3797	p.T1266M	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	39	0	0	58	53	47.75	-	-	-	T	77761899	C	T	77761899	3	4	689	1	0	0	0	0	1	0	0	0	17731	536	19	1	3823	1	ZFHX4	8	77761899	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	11236280	77761899	68602123	77	60316										
ZFHX4	0	genome.wustl.edu	37	chr8	77775820	77775820	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gggggatacttcccacctgtCtgtggcatggagagcctctt	13	11	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	77775820	77775820	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.9870	p.V3290	0.998	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	30	0	0	90	10	10	-	-	-	T	77775820	C	T	77775820	2	4	689	1	0	0	0	0	0	0	0	1	17731	900	32	2		2	ZFHX4	8	77775820	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	13921	77775820	68588202	78	60317										
KCNK9	0	genome.wustl.edu	37	chr8	140715163	140715163	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cgactcgagggcgtcgaacaCggcggcgcccaccagcaggt	15	15	0	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	8	140715163	140715163	C	A	SNP	KCNK9	ENST00000303015	human	ensembl	69_37n	-1	known	missense	c.73	p.V25L	1.000	pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427	42	0	0	41	45	52.33	-	-	-	A	140715163	C	A	140715163	3	1	689	1	0	0	0	0	1	0	0	0	8126	536	19	3	1059	3	KCNK9	8	140715163	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	62939343	140715163	5648859	79	60318										
RFX3	0	genome.wustl.edu	37	chr9	3225066	3225066	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	actgcagtgtaggtatttccTgtagcgctgcactgtctgat	11	9	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	3225066	3225066	T	C	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	silent	c.2226	p.T742	0.778	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	68	0	0	106	22	17.19	-	-	-	C	3225066	T	C	3225066	2	2	689	1	0	0	0	0	0	0	0	1	13347	1567	55	5		5	RFX3	9	3225066	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09		3225066	137988365	80	60319										
KDM4C	0	genome.wustl.edu	37	chr9	6986428	6986428	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atatagaagtgtaccttctaTatccagtgaggctgatgatt	9	6	1	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	6986428	6986428	T	A	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.1439	p.I480K	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	64	0	0	54	85	61.15	-	-	-	A	6986428	T	A	6986428	3	1	689	1	0	0	0	0	1	0	0	0	8184	1406	49	5	1547	5	KDM4C	9	6986428	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	3761362	6986428	134227003	81	60320										
MPDZ	0	genome.wustl.edu	37	chr9	13222406	13222406	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgatcaagagcctgtccattGatagcaagaatttgatcagt	9	7	2	5			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	13222406	13222406	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	silent	c.573	p.I191	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	73	0	0	186	27	12.62	-	-	-	A	13222406	G	A	13222406	2	1	689	1	0	0	0	0	0	0	0	1	9794	1280	45	2		2	MPDZ	9	13222406	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	6235978	13222406	127991025	82	60321										
AGTPBP1	0	genome.wustl.edu	37	chr9	88272558	88272558	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cagctctcctggcatttgttTctttaacaaaagaagattga	7	8	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	88272558	88272558	T	G	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.857	p.K286T	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	26	0	0	41	7	14.58	-	-	-	G	88272558	T	G	88272558	3	3	689	1	0	0	0	0	1	0	0	0	400	1797	62	5	2927	5	AGTPBP1	9	88272558	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	75050152	88272558	52940873	83	60322										
EPB41L4B	0	genome.wustl.edu	37	chr9	112018071	112018071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tacctgatcatcatcctcgaCcaccacgagtgtcaatttgc	6	14	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	112018071	112018071	C	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	69_37n	-1	known	missense	c.982	p.V328I	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4B	HGNC	ENSG00000095203	44	0	0	65	21	24.14	-	-	-	T	112018071	C	T	112018071	3	4	689	1	0	0	0	0	1	0	0	0	5193	507	18	4	1940	4	EPB41L4B	9	112018071	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	23745513	112018071	29195360	84	60323										
ZNF618	0	genome.wustl.edu	37	chr9	116812343	116812343	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cggccgtgggcgccagaagcGggtgtgtaaatatgtgtgaa	17	7	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	116812343	116812343	G	C	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	missense	c.2761	p.G921R	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	21	0	0	13	15	53.57	-	-	-	C	116812343	G	C	116812343	3	2	689	1	0	0	0	0	1	0	0	0	18138	1116	39	3	2536	3	ZNF618	9	116812343	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	4794272	116812343	24401088	85	60324										
TNC	0	genome.wustl.edu	37	chr9	117836049	117836049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tggggagactgtaattgaggCggtagcggtcaaatttggcc	16	6	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	117836049	117836049	C	T	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.3047	p.R1016H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	38	0	0	82	15	15.46	-	-	-	T	117836049	C	T	117836049	3	4	689	1	0	0	0	0	1	0	0	0	16365	768	27	1	3634	1	TNC	9	117836049	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	1023706	117836049	23377382	86	60325										
C5	0	genome.wustl.edu	37	chr9	123731362	123731362	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcacatgctactatgcgtttGtaatcagagtttccgtagcc	9	10	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	123731362	123731362	G	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	silent	c.4197	p.Y1399	0.786	superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	66	0	0	100	19	15.97	-	-	-	A	123731362	G	A	123731362	2	1	689	1	0	0	0	0	0	0	0	1	2301	1372	48	4		4	C5	9	123731362	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	5895313	123731362	17482069	87	60326										
RALGDS	0	genome.wustl.edu	37	chr9	136031465	136031465	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcatgttgctggtggcagagGcaagaaagagccatcatcat	12	8	3	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	9	136031465	136031465	G	T	SNP	RALGDS	ENST00000542690	human	ensembl	69_37n	-1	known	nonsense	c.162	p.C54*	0.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271	59	0	0	130	17	11.56	-	-	-	T	136031465	G	T	136031465	4	4	689	1	0	0	0	0	0	1	0	0	13099	1218	42	4		4	RALGDS	9	136031465	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	12300103	136031465	5181966	88	60327										
CUBN	0	genome.wustl.edu	37	chr10	16979758	16979758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agtaagctccaattaggcggGcgtgaatgctaggcccatca	12	10	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	10	16979758	16979758	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.5759	p.A1920V	0.935	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	26	0	0	63	25	28.41	-	-	-	A	16979758	G	A	16979758	3	1	689	1	0	0	0	0	1	0	0	0	4082	1203	42	4	5228	4	CUBN	10	16979758	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		16979758	118554989	89	60328										
THNSL1	0	genome.wustl.edu	37	chr10	25313411	25313411	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgattttcaaaaagcacaaaTaattggcagtcagagagaaa	8	5	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	10	25313411	25313411	T	G	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	missense	c.1259	p.I420R	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	92	0	0	204	25	10.92	-	-	-	G	25313411	T	G	25313411	3	3	689	1	0	0	0	0	1	0	0	0	15957	1406	49	5	1261	5	THNSL1	10	25313411	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	8333653	25313411	110221336	90	60329										
ITGB1	0	genome.wustl.edu	37	chr10	33218841	33218841	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gttcctttgctacggttggtTacatttttatttttctttat	6	6	1	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	10	33218841	33218841	T	C	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	silent	c.285	p.V95	0.198	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	108	0	0	213	115	35.06	-	-	-	C	33218841	T	C	33218841	2	2	689	1	0	0	0	0	0	0	0	1	7944	1741	61	5		5	ITGB1	10	33218841	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	7905430	33218841	102315906	91	60330										
FZD8	0	genome.wustl.edu	37	chr10	35930097	35930097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggcgtgtacatgctgcacagGaagaacttgagatcgggcga	15	8	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	10	35930097	35930097	G	C	SNP	FZD8	ENST00000374694	human	ensembl	69_37n	-1	known	missense	c.261	p.F87L	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283	29	0	0	43	23	34.33	-	-	-	C	35930097	G	C	35930097	3	2	689	1	0	0	0	0	1	0	0	0	6185	1165	41	2	1827	2	FZD8	10	35930097	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	2711256	35930097	99604650	92	60331										
MARK2	0	genome.wustl.edu	37	chr11	63670121	63670122	+	Frame_Shift_Del	DEL	AG	AG	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttcttactctaagaagactcAgagtaacaacgcagaaaata							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	63670121	63670122	AG	-	DEL	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	frame_shift_del	c.1283_1284	p.S429fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	14	0	0	17	25	58.14	-	-	-	-	63670122	AG	-	63670121	7	5	689	1	0	1	0	1	0	0	0	0	9384	188	7	0	1333	0	MARK2	11	63670121	Frame_Shift_Del	DEL	AG	TCGA-D8-A1JK-01A-11D-A13L-09		63670121	71336395	93	60332										
CDC42EP2	0	genome.wustl.edu	37	chr11	65088527	65088527	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cggcggcagtgacatgtttgGcgacatctccttcctgcagg	13	12	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	65088527	65088527	G	C	SNP	CDC42EP2	ENST00000279249	human	ensembl	69_37n	1	known	missense	c.158	p.G53A	0.996	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pirsf_Cdc42_effector_prot_2	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pirsf_Cdc42_effector_prot_2,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP2	HGNC	ENSG00000149798	25	0	0	11	17	60.71	-	-	-	C	65088527	G	C	65088527	3	2	689	1	0	0	0	0	1	0	0	0	3105	1203	42	4	160	4	CDC42EP2	11	65088527	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	1418406	65088527	69917989	94	60333										
SUV420H1	0	genome.wustl.edu	37	chr11	67947667	67947667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gagctcctcgaaggaaaggcGctatataaatgcaaaaacaa	9	8	0	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	67947667	67947667	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	silent	c.309	p.S103	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	43	0	0	44	32	41.56	-	-	-	A	67947667	G	A	67947667	2	1	689	1	0	0	0	0	0	0	0	1	15505	1101	38	1		1	SUV420H1	11	67947667	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	2859140	67947667	67058849	95	60334										
C2CD3	0	genome.wustl.edu	37	chr11	73849780	73849780	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	catacctgaaagaagatcctTggtagggaggttgtttgaag	13	5	0	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	73849780	73849780	T	A	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	nonsense	c.940	p.K314*	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	33	0	0	28	54	65.85	-	-	-	A	73849780	T	A	73849780	4	1	689	1	0	0	0	0	0	1	0	0	2174	1821	63	5	5059	5	C2CD3	11	73849780	Nonsense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	5902113	73849780	61156736	96	60335										
CLNS1A	0	genome.wustl.edu	37	chr11	77333553	77333554	+	Frame_Shift_Del	DEL	TC	TC	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aaggacactcaccttcataaTctcttattgaatcttctgtc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	77333553	77333554	TC	-	DEL	CLNS1A	ENST00000525428	human	ensembl	69_37n	-1	known	frame_shift_del	c.638_637	p.D213fs	1.000:0.998	NULL	prints_ICln_channel	-	no_errors	CLNS1A	HGNC	ENSG00000074201	68	0	0	107	16	12.9	-	-	-	-	77333554	TC	-	77333553	7	5	689	1	0	1	0	1	0	0	0	0	3578	1435	50	0	83	0	CLNS1A	11	77333553	Frame_Shift_Del	DEL	TC	TCGA-D8-A1JK-01A-11D-A13L-09	3483773	77333553	57672963	97	60336										
GRIA4	0	genome.wustl.edu	37	chr11	105804480	105804480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcagtgtatgaaaagatgtgGacctacatgcgatcagcaga	12	7	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	105804480	105804480	G	T	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.2079	p.W693C	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	36	0	0	44	8	15.09	-	-	-	T	105804480	G	T	105804480	3	4	689	1	0	0	0	0	1	0	0	0	6821	1183	41	2	2166	2	GRIA4	11	105804480	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	28470927	105804480	29202036	98	60337										
OPCML	0	genome.wustl.edu	37	chr11	132307135	132307135	+	Frame_Shift_Del	DEL	T	T	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cagtttacagtgatttttacTttccgcacatcgggcgcagc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	11	132307135	132307135	T	-	DEL	OPCML	ENST00000541867	human	ensembl	69_37n	-1	known	frame_shift_del	c.645	p.V216fs	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	OPCML	HGNC	ENSG00000183715	50	0	0	68	32	31.68	-	-	-	-	132307135	T	-	132307135	7	5	689	1	0	1	0	1	0	0	0	0	10947	1606	56	0	408	0	OPCML	11	132307135	Frame_Shift_Del	DEL	T	TCGA-D8-A1JK-01A-11D-A13L-09	26502655	132307135	2699381	99	60338										
C3AR1	0	genome.wustl.edu	37	chr12	8211623	8211623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gtatggagtccagcagacaaGaaagacagccaccaccacca	9	13	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	8211623	8211623	G	C	SNP	C3AR1	ENST00000307637	human	ensembl	69_37n	-1	known	missense	c.1159	p.L387V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C3A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Frt_met_rcpt,prints_C5A_anaphtx_rcpt	-	no_errors	C3AR1	HGNC	ENSG00000171860	24	0	0	41	23	35.94	-	-	-	C	8211623	G	C	8211623	3	2	689	1	0	0	0	0	1	0	0	0	2225	942	33	2	293	2	C3AR1	12	8211623	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		8211623	125640272	100	60339										
A2M	0	genome.wustl.edu	37	chr12	9221429	9221429	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gaagaacaagctcagtgtctGatttgacacctggaaagcaa	10	8	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	9221429	9221429	G	A	SNP	A2M	ENST00000318602	human	ensembl	69_37n	-1	known	nonsense	c.4273	p.Q1425*	0.956	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	50	0	0	100	13	11.5	-	-	-	A	9221429	G	A	9221429	4	1	689	1	0	0	0	0	0	1	0	0	4	1299	45	2	163	2	A2M	12	9221429	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	1009806	9221429	124630466	101	60340										
KLRB1	0	genome.wustl.edu	37	chr12	9750720	9750721	+	Frame_Shift_Del	DEL	AG	AG	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aatttaatccaatccaaaacAgaattgctttgtcacgtatc							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	9750720	9750721	AG	-	DEL	KLRB1	ENST00000229402	human	ensembl	69_37n	-1	known	frame_shift_del	c.452_451	p.L151fs	0.000:0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRB1	HGNC	ENSG00000111796	43	0	0	62	12	16.22	-	-	-	-	9750721	AG	-	9750720	7	5	689	1	0	1	0	1	0	0	0	0	8467	188	7	0	232	0	KLRB1	12	9750720	Frame_Shift_Del	DEL	AG	TCGA-D8-A1JK-01A-11D-A13L-09	529291	9750720	124101175	102	60341										
TAS2R8	0	genome.wustl.edu	37	chr12	10959166	10959166	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctgaccaacaaggaaatggcAaagcatcccagcaggatcca	9	12	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	10959166	10959166	A	G	SNP	TAS2R8	ENST00000240615	human	ensembl	69_37n	-1	known	silent	c.414	p.F138	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R8	HGNC	ENSG00000121314	53	0	0	108	17	13.6	-	-	-	G	10959166	A	G	10959166	2	3	689	1	0	0	0	0	0	0	0	1	15679	127	5	5		5	TAS2R8	12	10959166	Silent	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	1208446	10959166	122892729	103	60342										
TAS2R14	0	genome.wustl.edu	37	chr12	11091413	11091413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cgaagtcacaagaagcagcaCcaaaaccacctttttaaccc	5	14	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	11091413	11091413	C	T	SNP	TAS2R14	ENST00000537503	human	ensembl	69_37n	-1	known	missense	c.394	p.V132M	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R14	HGNC	ENSG00000212127	27	0	0	37	11	22.92	-	-	-	T	11091413	C	T	11091413	3	4	689	1	0	0	0	0	1	0	0	0	15660	507	18	4	562	4	TAS2R14	12	11091413	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	132247	11091413	122760482	104	60343										
PDE3A	0	genome.wustl.edu	37	chr12	20806958	20806958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cctcagctggccaaccttcaGgaatccttcatctctcacat	5	16	5	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	20806958	20806958	G	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.3003	p.Q1001H	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	39	0	0	107	15	12.2	-	-	-	T	20806958	G	T	20806958	3	4	689	1	0	0	0	0	1	0	0	0	11710	991	35	4	3061	4	PDE3A	12	20806958	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	9715545	20806958	113044937	105	60344										
CSAD	0	genome.wustl.edu	37	chr12	53567239	53567239	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cccagcaagggaggggagtgCttctgagtcagccatcagga	15	10	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	53567239	53567239	C	A	SNP	CSAD	ENST00000267085	human	ensembl	69_37n	-1	known	missense	c.97	p.A33S	0.019	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CSAD	HGNC	ENSG00000139631	22	0	0	78	12	13.33	-	-	-	A	53567239	C	A	53567239	3	1	689	1	0	0	0	0	1	0	0	0	3955	797	28	4	1521	4	CSAD	12	53567239	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	32760281	53567239	80284656	106	60345										
CD63	0	genome.wustl.edu	37	chr12	56119345	56119345	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aggctgaggagaccagacccCtacatcacctcgtagccact	9	15	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	56119345	56119345	C	T	SNP	CD63	ENST00000257857	human	ensembl	69_37n	-1	known	silent	c.717	p.*239	0.963	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD63	HGNC	ENSG00000135404	32	0	0	39	9	18.75	-	-	-	T	56119345	C	T	56119345	2	4	689	1	0	0	0	0	0	0	0	1	3058	692	24	4		4	CD63	12	56119345	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	2552106	56119345	77732550	107	60346										
BAZ2A	0	genome.wustl.edu	37	chr12	57007800	57007800	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gattggagtgtcttccagttGatcaggaagatgtgaaggat	14	4	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	57007800	57007800	G	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.859	p.Q287K	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	30	0	0	52	34	39.53	-	-	-	T	57007800	G	T	57007800	3	4	689	1	0	0	0	0	1	0	0	0	1335	1299	45	2	4962	2	BAZ2A	12	57007800	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	888455	57007800	76844095	108	60347										
TCTN1	0	genome.wustl.edu	37	chr12	111085556	111085556	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tctctctgtttattacaggcCaactcaggaaatgaaaggac	8	9	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	111085556	111085556	C	A	SNP	TCTN1	ENST00000481093	human	ensembl	69_37n	1	putative	missense	c.77	p.P26Q	0.000	NULL	NULL	-	no_stop_codon	TCTN1	HGNC	ENSG00000204852	29	0	0	50	13	20.63	-	-	-	A	111085556	C	A	111085556	3	1	689	1	0	0	0	0	1	0	0	0	15817	581	21	4	1864	4	TCTN1	12	111085556	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	54077756	111085556	22766339	109	60348										
TRAFD1	0	genome.wustl.edu	37	chr12	112589696	112589696	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cccagccgacccattaacaaTatgacagctacctataacca	4	15	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	112589696	112589696	T	A	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.1371	p.N457K	0.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	47	0	0	70	21	23.08	-	-	-	A	112589696	T	A	112589696	3	1	689	1	0	0	0	0	1	0	0	0	16543	1403	49	5	1405	5	TRAFD1	12	112589696	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	1504140	112589696	21262199	110	60349										
CLIP1	0	genome.wustl.edu	37	chr12	122794401	122794402	+	Frame_Shift_Del	DEL	TC	TC	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cgctgaaagctgctgggactTctgagctgctgcctgcttta							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	12	122794401	122794402	TC	-	DEL	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	frame_shift_del	c.3502_3501	p.K1168fs	1.000:1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	37	0	0	75	21	21.43	-	-	-	-	122794402	TC	-	122794401	7	5	689	1	0	1	0	1	0	0	0	0	3562	1792	62	0	842	0	CLIP1	12	122794401	Frame_Shift_Del	DEL	TC	TCGA-D8-A1JK-01A-11D-A13L-09	10204705	122794401	11057494	111	60350										
RNF17	0	genome.wustl.edu	37	chr13	25399899	25399899	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agatggaatttggtaccgagCaaaagttatcggtaggagaa	13	4	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	13	25399899	25399899	C	G	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.2234	p.A745G	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	48	0	0	53	20	27.4	-	-	-	G	25399899	C	G	25399899	3	3	689	1	0	0	0	0	1	0	0	0	13547	710	25	4	2296	4	RNF17	13	25399899	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09		25399899	89769979	112	60351										
PCK2	0	genome.wustl.edu	37	chr14	24571997	24571997	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gtgcacatcccaactctcgaTtttgtgccccggctcgccag	9	16	1	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	24571997	24571997	T	C	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	missense	c.1270	p.F424L	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	41	0	0	59	27	31.4	-	-	-	C	24571997	T	C	24571997	3	2	689	1	0	0	0	0	1	0	0	0	11655	1493	52	5	1392	5	PCK2	14	24571997	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09		24571997	82777543	113	60352										
SRP54	0	genome.wustl.edu	37	chr14	35488263	35488263	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gaaattaatgacaataatggAtagtatgaatgatcaaggta	9	2	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	35488263	35488263	A	C	SNP	SRP54	ENST00000216774	human	ensembl	69_37n	1	known	missense	c.1139	p.D380A	1.000	pfam_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particle_SRP54_M,tigrfam_Signal_recog_particle_SRP54	pfam_Signal_recog_part_SRP54_GTPase,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_Cbl_biosynth_CobW-like,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase,tigrfam_Signal_recog_particle_SRP54	-	no_errors	SRP54	HGNC	ENSG00000100883	58	0	0	164	29	15.03	-	-	-	C	35488263	A	C	35488263	3	2	689	1	0	0	0	0	1	0	0	0	15246	333	12	5	1185	5	SRP54	14	35488263	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	10916266	35488263	71861277	114	60353										
DAAM1	0	genome.wustl.edu	37	chr14	59789814	59789814	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gctcagagtctgagcacagaGaacattaaaacgaaggtggc	12	8	2	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	59789814	59789814	G	C	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.645	p.E215D	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	28	0	0	48	19	28.36	-	-	-	C	59789814	G	C	59789814	3	2	689	1	0	0	0	0	1	0	0	0	4247	933	33	2	663	2	DAAM1	14	59789814	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	24301551	59789814	47559726	115	60354										
MPP5	0	genome.wustl.edu	37	chr14	67784190	67784190	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttttatataatgccaataaaAatgatggtaagttctactct	5	5	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	67784190	67784190	A	C	SNP	MPP5	ENST00000261681	human	ensembl	69_37n	1	known	missense	c.1363	p.N455H	1.000	superfamily_SH3_domain	pfam_Guanylate_kin,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP5	HGNC	ENSG00000072415	53	0	0	143	22	13.33	-	-	-	C	67784190	A	C	67784190	3	2	689	1	0	0	0	0	1	0	0	0	9809	14	1	5	1397	5	MPP5	14	67784190	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	7994376	67784190	39565350	116	60355										
VRK1	0	genome.wustl.edu	37	chr14	97322913	97322916	+	Frame_Shift_Del	DEL	AAAC	AAAC	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gacaaatgttttcctgagaaAaacaaaccaggtaggaaatg							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AAAC	AAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	97322913	97322916	AAAC	-	DEL	VRK1	ENST00000216639	human	ensembl	69_37n	1	known	frame_shift_del	c.879_882	p.K295fs	1.000:1.000:1.000:0.999	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK1	HGNC	ENSG00000100749	44	0	0	106	12	10.17	-	-	-	-	97322916	AAAC	-	97322913	7	5	689	1	0	1	0	1	0	0	0	0	17316	11	1	0	913	0	VRK1	14	97322913	Frame_Shift_Del	DEL	AAAC	TCGA-D8-A1JK-01A-11D-A13L-09	29538723	97322913	10026627	117	60356										
DYNC1H1	0	genome.wustl.edu	37	chr14	102467495	102467495	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tccacagataaatatgctggTgattgaactgaaatccgaag	9	7	0	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	14	102467495	102467495	T	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.4199	p.V1400A	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	65	0	0	100	72	41.86	-	-	-	C	102467495	T	C	102467495	3	2	689	1	0	0	0	0	1	0	0	0	4876	1696	59	5	4277	5	DYNC1H1	14	102467495	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	5144582	102467495	4882045	118	60357										
EIF2AK4	0	genome.wustl.edu	37	chr15	40246168	40246168	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	taaaagaagagaaaaaaaggAaagaaatggctaagcaggta	11	2	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	15	40246168	40246168	A	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	nonsense	c.577	p.K193*	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	38	0	0	67	28	29.47	-	-	-	T	40246168	A	T	40246168	4	4	689	1	0	0	0	0	0	1	0	0	5034	247	9	5	595	5	EIF2AK4	15	40246168	Nonsense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09		40246168	62285224	119	60358										
C15orf44	0	genome.wustl.edu	37	chr15	65871806	65871806	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aaaggtgtgatgttctggtcAtaagcggcatactcagaggt	13	6	3	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	15	65871806	65871806	A	G	SNP	C15orf44	ENST00000567744	human	ensembl	69_37n	-1	known	silent	c.1605	p.Y535	0.552	NULL	NULL	-	no_errors	C15orf44	HGNC	ENSG00000138614	39	0	0	83	15	15.31	-	-	-	G	65871806	A	G	65871806	2	3	689	1	0	0	0	0	0	0	0	1	1810	224	8	5		5	C15orf44	15	65871806	Silent	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	25625638	65871806	36659586	120	60359										
DENND4A	0	genome.wustl.edu	37	chr15	66022017	66022017	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gtgttgaaaacttgccaccaCtgtcaatccaaacaaaaata	5	10	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	15	66022017	66022017	C	T	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	splice_site	c.1167-1	e8-1	1.000	-	-	-	no_errors	DENND4A	HGNC	ENSG00000174485	34	0	0	67	9	11.84	-	-	-	T	66022017	C	T	66022017	5	4	689	1	0	0	0	0	0	0	1	0	4469	579	20	4	4650	4	DENND4A	15	66022017	Splice_Site	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	150211	66022017	36509375	121	60360										
SYNM	0	genome.wustl.edu	37	chr15	99673182	99673182	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cagagaatggtagaccaaagGtcggtgatttcagatgaaaa	12	5	1	5			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	15	99673182	99673182	G	A	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	silent	c.4614	p.R1538	1.000	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	28	0	0	31	11	26.19	-	-	-	A	99673182	G	A	99673182	2	1	689	1	0	0	0	0	0	0	0	1	15547	1252	44	4		4	SYNM	15	99673182	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	33651165	99673182	2858210	122	60361										
ABCC1	0	genome.wustl.edu	37	chr16	16208804	16208804	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gacacagtggactccatgatCccggaggtcatcaagatgtt	11	10	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	16208804	16208804	C	A	SNP	ABCC1	ENST00000572882	human	ensembl	69_37n	1	novel	missense	c.2986	p.P996T	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCC1	HGNC	ENSG00000103222	34	0	0	106	13	10.92	-	-	-	A	16208804	C	A	16208804	3	1	689	1	0	0	0	0	1	0	0	0	49	845	30	2	3351	2	ABCC1	16	16208804	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09		16208804	74145949	123	60362										
SYT17	0	genome.wustl.edu	37	chr16	19194881	19194881	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agacgtcccagctctccactCatcgatattaaacccatcga	5	15	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	19194881	19194881	C	T	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	1	known	silent	c.363	p.L121	0.907	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	20	0	0	52	11	17.46	-	-	-	T	19194881	C	T	19194881	2	4	689	1	0	0	0	0	0	0	0	1	15565	813	29	2		2	SYT17	16	19194881	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	2986077	19194881	71159872	124	60363										
HS3ST2	0	genome.wustl.edu	37	chr16	22926863	22926863	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aattttatgaaaccgttgggCaggacttcaggtgggaataa	12	5	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	22926863	22926863	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	nonsense	c.1084	p.Q362*	1.000	NULL	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	31	0	0	81	23	22.12	-	-	-	T	22926863	C	T	22926863	4	4	689	1	0	0	0	0	0	1	0	0	7415	711	25	4	1090	4	HS3ST2	16	22926863	Nonsense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	3731982	22926863	67427890	125	60364										
BRD7	0	genome.wustl.edu	37	chr16	50353829	50353829	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tccacaaagttgttttccatGacgggggaaggaatggaaat	12	6	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	50353829	50353829	G	T	SNP	BRD7	ENST00000394689	human	ensembl	69_37n	-1	known	silent	c.1872	p.V624	0.000	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	49	0	0	88	41	31.78	-	-	-	T	50353829	G	T	50353829	2	4	689	1	0	0	0	0	0	0	0	1	1513	1277	45	2		2	BRD7	16	50353829	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	27426966	50353829	40000924	126	60365										
GPR114	0	genome.wustl.edu	37	chr16	57596304	57596304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gtgtccccacagagacatggGaagaactcctgagctacatg	11	11	0	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	57596304	57596304	G	A	SNP	GPR114	ENST00000340339	human	ensembl	69_37n	1	known	missense	c.73	p.E25K	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	48	0	0	148	45	23.2	-	-	-	A	57596304	G	A	57596304	3	1	689	1	0	0	0	0	1	0	0	0	6681	1175	41	2	79	2	GPR114	16	57596304	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	7242475	57596304	32758449	127	60366										
DYNC1LI2	0	genome.wustl.edu	37	chr16	66783211	66783211	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ggttgttttaccagaaccatCttcacctacaaaggatgttt	7	9	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	66783211	66783211	C	G	SNP	DYNC1LI2	ENST00000258198	human	ensembl	69_37n	-1	known	missense	c.187	p.D63H	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720	108	0	0	271	49	15.31	-	-	-	G	66783211	C	G	66783211	3	3	689	1	0	0	0	0	1	0	0	0	4880	913	32	2	1335	2	DYNC1LI2	16	66783211	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	9186907	66783211	23571542	128	60367										
SLC7A5	0	genome.wustl.edu	37	chr16	87874747	87874747	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aaatgagaagttgggatctaGattggacacatcacctggca	11	7	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	16	87874747	87874747	G	C	SNP	SLC7A5	ENST00000261622	human	ensembl	69_37n	-1	known	missense	c.679	p.L227V	0.982	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257	58	0	0	141	18	11.32	-	-	-	C	87874747	G	C	87874747	3	2	689	1	0	0	0	0	1	0	0	0	14789	933	33	2	876	2	SLC7A5	16	87874747	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	21091536	87874747	2480006	129	60368										
FAM57A	0	genome.wustl.edu	37	chr17	641191	641191	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cgaaccagagaccagaaccgTgcgccctccctcactcttcg	8	18	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	641191	641191	T	A	SNP	FAM57A	ENST00000308278	human	ensembl	69_37n	1	known	silent	c.312	p.R104	0.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57A	HGNC	ENSG00000167695	44	0	0	39	44	53.01	-	-	-	A	641191	T	A	641191	2	1	689	1	0	0	0	0	0	0	0	1	5633	1683	59	5		5	FAM57A	17	641191	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09		641191	80554019	130	60369										
TP53	0	genome.wustl.edu	37	chr17	7576852	7576852	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agaggtcccaagacttagtaCctgaagggtgaaatattctc	10	8	1	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	7576852	7576852	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.993+1	e8+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	67	0	0	62	70	53.03	-	-	-	T	7576852	C	T	7576852	5	4	689	1	0	0	0	0	0	0	1	0	16477	521	18	4	288	4	TP53	17	7576852	Splice_Site	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	6935661	7576852	73618358	131	60370										
MYH4	0	genome.wustl.edu	37	chr17	10358115	10358115	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cggatgttgtactgaatgcaGaagatggactctctgtagga	13	6	1	3			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	10358115	10358115	G	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.2448	p.F816	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	76	0	0	116	61	34.27	-	-	-	A	10358115	G	A	10358115	2	1	689	1	0	0	0	0	0	0	0	1	10109	933	33	2		2	MYH4	17	10358115	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	2781263	10358115	70837095	132	60371										
NCOR1	0	genome.wustl.edu	37	chr17	16012203	16012203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcacattgagacacatctcgCtcttcacgaggttttcgtga	8	11	4	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	16012203	16012203	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.2079	p.E693D	0.994	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	52	0	0	70	50	41.67	-	-	-	A	16012203	C	A	16012203	3	1	689	1	0	0	0	0	1	0	0	0	10307	796	28	4	5355	4	NCOR1	17	16012203	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	5654088	16012203	65183007	133	60372										
SYNRG	0	genome.wustl.edu	37	chr17	35902621	35902621	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gtaagtgtgctcactgcaaaAttgctactgtagcttccaaa	8	9	1	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	35902621	35902621	A	T	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	missense	c.2655	p.N885K	0.995	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	15	0	0	28	7	20	-	-	-	T	35902621	A	T	35902621	3	4	689	1	0	0	0	0	1	0	0	0	15552	98	4	5	1394	5	SYNRG	17	35902621	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	19890418	35902621	45292589	134	60373										
SYNRG	0	genome.wustl.edu	37	chr17	35946532	35946532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ctggtgatctcttactgctgCtcttcggcaaactgcttctg	9	12	3	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	35946532	35946532	C	A	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	missense	c.366	p.E122D	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	58	0	0	54	44	44.9	-	-	-	A	35946532	C	A	35946532	3	1	689	1	0	0	0	0	1	0	0	0	15552	796	28	4	3727	4	SYNRG	17	35946532	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	43911	35946532	45248678	135	60374										
STAT3	0	genome.wustl.edu	37	chr17	40481654	40481654	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgtttgtgcccagaatgttaAatttccgggatctgaatcac	9	8	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	40481654	40481654	A	T	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	missense	c.1151	p.F384Y	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	83	0	0	72	63	46.67	-	-	-	T	40481654	A	T	40481654	3	4	689	1	0	0	0	0	1	0	0	0	15357	14	1	5	1209	5	STAT3	17	40481654	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	4535122	40481654	40713556	136	60375										
ACBD4	0	genome.wustl.edu	37	chr17	43220876	43220876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cggggcccgcgctgctcttcTtcctcctgtggcccttcgtc	11	18	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	43220876	43220876	T	C	SNP	ACBD4	ENST00000321854	human	ensembl	69_37n	1	known	missense	c.856	p.F286L	0.926	NULL	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD4	HGNC	ENSG00000181513	34	0	0	31	19	38	-	-	-	C	43220876	T	C	43220876	3	2	689	1	0	0	0	0	1	0	0	0	124	1609	56	5	960	5	ACBD4	17	43220876	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	2739222	43220876	37974334	137	60376										
TSEN54	0	genome.wustl.edu	37	chr17	73519828	73519828	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	acattccgaaagaataacccTggcaaaccctatgcccggat	7	13	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	73519828	73519828	T	G	SNP	TSEN54	ENST00000333213	human	ensembl	69_37n	1	known	silent	c.1398	p.P466	0.987	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173	41	0	0	65	12	15.58	-	-	-	G	73519828	T	G	73519828	2	3	689	1	0	0	0	0	0	0	0	1	16710	1567	55	5		5	TSEN54	17	73519828	Silent	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	30298952	73519828	7675382	138	60377										
RNF213	0	genome.wustl.edu	37	chr17	78311392	78311392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttttgtccccatagtgtgacTccgccaggaacttggaatgg	11	10	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	17	78311392	78311392	T	C	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.4534	p.S1512P	1.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	21	0	0	27	6	18.18	-	-	-	C	78311392	T	C	78311392	3	2	689	1	0	0	0	0	1	0	0	0	13563	1551	54	5	4943	5	RNF213	17	78311392	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	4791564	78311392	2883818	139	60378										
LPIN2	0	genome.wustl.edu	37	chr18	2934386	2934386	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agctgcaacttcaggttctaGaccctttaagtcatcaaggt	8	10	4	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	2934386	2934386	G	T	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	missense	c.1231	p.L411I	0.948	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	55	0	0	120	20	14.29	-	-	-	T	2934386	G	T	2934386	3	4	689	1	0	0	0	0	1	0	0	0	8985	933	33	2	1511	2	LPIN2	18	2934386	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		2934386	75142862	140	60379										
DLGAP1	0	genome.wustl.edu	37	chr18	3582137	3582137	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgtccgtccatgtaggcatcCtgggctgactctgtgctact	11	12	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	3582137	3582137	C	A	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	missense	c.1701	p.Q567H	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	88	0	0	229	39	14.55	-	-	-	A	3582137	C	A	3582137	3	1	689	1	0	0	0	0	1	0	0	0	4595	680	24	4	1256	4	DLGAP1	18	3582137	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	647751	3582137	74495111	141	60380										
LAMA1	0	genome.wustl.edu	37	chr18	7011398	7011400	+	In_Frame_Del	DEL	GTA	GTA	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agcaggaagtcgggggcctgGtagtaaaccccctcggtcgt							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	GTA	GTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	7011398	7011400	GTA	-	DEL	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	in_frame_del	c.3588_3586	p.Y1196in_frame_del	0.583:0.507:0.449	pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	22	0	0	19	10	34.48	-	-	-	-	7011400	GTA	-	7011398	7	5	689	1	0	1	0	1	0	0	0	0	8659	1256	44	0	5795	0	LAMA1	18	7011398	In_Frame_Del	DEL	GTA	TCGA-D8-A1JK-01A-11D-A13L-09	3429261	7011398	71065850	142	60381										
ROCK1	0	genome.wustl.edu	37	chr18	18572891	18572891	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	acctcctcttgtaaagatgtAattcgagctatcaagtgaga	8	8	2	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	18572891	18572891	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	silent	c.1893	p.I631	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	89	0	0	133	58	30.37	-	-	-	G	18572891	A	G	18572891	2	3	689	1	0	0	0	0	0	0	0	1	13603	358	13	5		5	ROCK1	18	18572891	Silent	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	11561493	18572891	59504357	143	60382										
CABYR	0	genome.wustl.edu	37	chr18	21739933	21739933	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	atgtagctaaaaaaagttcaGgatctggtgacaaatgtgct	10	5	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	21739933	21739933	G	T	SNP	CABYR	ENST00000399496	human	ensembl	69_37n	1	known	nonsense	c.1039	p.G347*	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	56	0	0	120	25	17.24	-	-	-	T	21739933	G	T	21739933	4	4	689	1	0	0	0	0	0	1	0	0	2561	1001	35	4	1994	4	CABYR	18	21739933	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	3167042	21739933	56337315	144	60383										
ASXL3	0	genome.wustl.edu	37	chr18	31326469	31326469	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgctcttgccggctgaaagcCatgattgtgtgcaaaggctg	13	9	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	31326469	31326469	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	silent	c.6657	p.A2219	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	45	0	0	101	17	14.41	-	-	-	T	31326469	C	T	31326469	2	4	689	1	0	0	0	0	0	0	0	1	1072	581	21	4		4	ASXL3	18	31326469	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	9586536	31326469	46750779	145	60384										
ATP9B	0	genome.wustl.edu	37	chr18	76974004	76974004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttataccggaaaagagactcGaagtgtaatgaacacatcca	8	8	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	18	76974004	76974004	G	A	SNP	ATP9B	ENST00000426216	human	ensembl	69_37n	1	known	missense	c.1073	p.R358Q	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9B	HGNC	ENSG00000166377	111	0	0	219	28	11.34	-	-	-	A	76974004	G	A	76974004	3	1	689	1	0	0	0	0	1	0	0	0	1203	1058	37	1	1115	1	ATP9B	18	76974004	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	45647535	76974004	1103244	146	60385										
RGL3	0	genome.wustl.edu	37	chr19	11527722	11527722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tggaggaaggtattggcaatGgggctgggagcctgcaggag	20	5	0	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	19	11527722	11527722	G	A	SNP	RGL3	ENST00000562663	human	ensembl	69_37n	-1	known	missense	c.154	p.H52Y	0.000	superfamily_Ras_GEF_dom	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RGL3	HGNC	ENSG00000205517	21	0	0	37	20	35.09	-	-	-	A	11527722	G	A	11527722	3	1	689	1	0	0	0	0	1	0	0	0	13361	1335	47	4	2059	4	RGL3	19	11527722	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		11527722	47601261	147	60386										
ZNF433	0	genome.wustl.edu	37	chr19	12125835	12125835	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	attgcttacatttatacggtTtctctccagtgtgagtcctt	7	9	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	19	12125835	12125835	T	A	SNP	ZNF433	ENST00000344980	human	ensembl	69_37n	-1	known	missense	c.1847	p.K616I	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647	62	0	0	131	27	17.09	-	-	-	A	12125835	T	A	12125835	3	1	689	1	0	0	0	0	1	0	0	0	18003	1841	64	5	178	5	ZNF433	19	12125835	Missense_Mutation	SNP	T	TCGA-D8-A1JK-01A-11D-A13L-09	598113	12125835	47003148	148	60387										
KLC3	0	genome.wustl.edu	37	chr19	45851256	45851256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tggctatgagatccctgcccGccttcggaccctgcataacc	9	16	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	19	45851256	45851256	G	A	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	1	known	missense	c.659	p.R220H	1.000	pfam_Rabaptin_Rab5-bd_dom,prints_Kinesin_light	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	12	0	0	19	12	38.71	-	-	-	A	45851256	G	A	45851256	3	1	689	1	0	0	0	0	1	0	0	0	8388	1087	38	1	631	1	KLC3	19	45851256	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	33725421	45851256	13277727	149	60388										
SCAF1	0	genome.wustl.edu	37	chr19	50154334	50154334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cccgattcgatatctatgacCccttccaccccaccgacgag	6	18	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	19	50154334	50154334	C	G	SNP	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	missense	c.688	p.P230A	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	8	0	0	17	8	32	-	-	-	G	50154334	C	G	50154334	3	3	689	1	0	0	0	0	1	0	0	0	13955	623	22	4	710	4	SCAF1	19	50154334	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	4303078	50154334	8974649	150	60389										
ZNF587	0	genome.wustl.edu	37	chr19	58371291	58371291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgggaaatcatttctttccaGctctgcgcttcatgttcata	7	10	5	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	19	58371291	58371291	G	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.1511	p.S504I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	75	0	0	190	25	11.63	-	-	-	T	58371291	G	T	58371291	3	4	689	1	0	0	0	0	1	0	0	0	18116	971	34	4	1521	4	ZNF587	19	58371291	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	8216957	58371291	757692	151	60390										
CD93	0	genome.wustl.edu	37	chr20	23065764	23065764	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aggggtgttgacacactcctGggcacagggggagtcctggc	17	10	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	20	23065764	23065764	G	A	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	nonsense	c.1066	p.Q356*	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_CD93/CD141,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	14	0	0	16	8	32	-	-	-	A	23065764	G	A	23065764	4	1	689	1	0	0	0	0	0	1	0	0	3076	1357	47	4	900	4	CD93	20	23065764	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09		23065764	39959756	152	60391										
GSS	0	genome.wustl.edu	37	chr20	33517366	33517366	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tcagctgtttcagggcctgtAccatttcctccccatatagg	8	13	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	20	33517366	33517366	A	G	SNP	GSS	ENST00000216951	human	ensembl	69_37n	-1	known	missense	c.1139	p.V380A	0.041	pfam_Glutathione_synthase_euk,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_fold,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	-	no_errors	GSS	HGNC	ENSG00000100983	48	0	0	75	43	36.44	-	-	-	G	33517366	A	G	33517366	3	3	689	1	0	0	0	0	1	0	0	0	6880	391	14	5	293	5	GSS	20	33517366	Missense_Mutation	SNP	A	TCGA-D8-A1JK-01A-11D-A13L-09	10451602	33517366	29508154	153	60392										
ZNF217	0	genome.wustl.edu	37	chr20	52193275	52193275	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tgacaatccacacttggcctGtatctgcagtcagctgcggt	10	12	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	20	52193275	52193275	G	T	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	nonsense	c.2028	p.Y676*	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	65	0	0	255	99	27.97	-	-	-	T	52193275	G	T	52193275	4	4	689	1	0	0	0	0	0	1	0	0	17868	1372	48	4	1126	4	ZNF217	20	52193275	Nonsense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	18675909	52193275	10832245	154	60393										
POTED	0	genome.wustl.edu	37	chr21	15013685	15013687	+	In_Frame_Del	DEL	AAG	AAG	-													0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gctttctcttagtcataagaAagaagaagatctcttgcgtg							TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	21	15013685	15013687	AAG	-	DEL	POTED	ENST00000299443	human	ensembl	69_37n	1	known	in_frame_del	c.1553_1555	p.E520in_frame_del	0.464:0.557:0.573	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTED	HGNC	ENSG00000166351	74	0	0	137	70	33.82	-	-	-	-	15013687	AAG	-	15013685	7	5	689	1	0	1	0	1	0	0	0	0	12337	14	1	0	1595	0	POTED	21	15013685	In_Frame_Del	DEL	AAG	TCGA-D8-A1JK-01A-11D-A13L-09		15013685	33116210	155	60394										
CHODL	0	genome.wustl.edu	37	chr21	19635193	19635193	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	gcttttggaacctgttgtttCcagatgctgcataaaaggta	10	7	0	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	21	19635193	19635193	C	T	SNP	CHODL	ENST00000299295	human	ensembl	69_37n	1	known	silent	c.720	p.F240	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CHODL	HGNC	ENSG00000154645	81	0	0	129	24	15.69	-	-	-	T	19635193	C	T	19635193	2	4	689	1	0	0	0	0	0	0	0	1	3393	854	30	2		2	CHODL	21	19635193	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	4621508	19635193	28494702	156	60395										
ADAMTS5	0	genome.wustl.edu	37	chr21	28306826	28306826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tttgtccacacatttgccctGcaggcagattctcccctttc	6	15	1	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	21	28306826	28306826	G	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1648	p.Q550K	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	47	0	0	104	21	16.8	-	-	-	T	28306826	G	T	28306826	3	4	689	1	0	0	0	0	1	0	0	0	269	1328	46	4	1164	4	ADAMTS5	21	28306826	Missense_Mutation	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	8671633	28306826	19823069	157	60396										
NHS	0	genome.wustl.edu	37	chrX	17750232	17750232	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agattctagttaccgcatgtCtgccactgagatcctgaaga	9	10	2	4			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	17750232	17750232	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.4541	p.S1514F	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	40	0	0	76	22	22.45	-	-	-	T	17750232	C	T	17750232	3	4	689	1	0	0	0	0	1	0	0	0	10483	913	32	2	4676	2	NHS	23	17750232	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09		17750232	137520328	158	60397										
ELK1	0	genome.wustl.edu	37	chrX	47500826	47500826	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	agcagaaactgccacagcgtCacagatgggtccatcgctgg	12	12	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	47500826	47500826	C	T	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	silent	c.15	p.V5	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	24	0	0	60	9	13.04	-	-	-	T	47500826	C	T	47500826	2	4	689	1	0	0	0	0	0	0	0	1	5096	813	29	2		2	ELK1	23	47500826	Silent	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	29750594	47500826	107769734	159	60398										
ZNF182	0	genome.wustl.edu	37	chrX	47837015	47837015	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ccaaatgattcgtgtttatcGggtctttgtattgaagcaac	9	7	1	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	47837015	47837015	G	A	SNP	ZNF182	ENST00000305127	human	ensembl	69_37n	-1	known	silent	c.471	p.P157	0.013	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118	50	0	0	115	34	22.82	-	-	-	A	47837015	G	A	47837015	2	1	689	1	0	0	0	0	0	0	0	1	17846	1103	39	1		1	ZNF182	23	47837015	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	336189	47837015	107433545	160	60399										
OTUD5	0	genome.wustl.edu	37	chrX	48780995	48780995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	aggggggaagttgcccggtcGgcccctgccgagaactgact	16	12	0	2			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	48780995	48780995	G	A	SNP	OTUD5	ENST00000156084	human	ensembl	69_37n	-1	known	silent	c.1509	p.A503	0.565	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD5	HGNC	ENSG00000068308	17	0	0	51	10	16.39	-	-	-	A	48780995	G	A	48780995	2	1	689	1	0	0	0	0	0	0	0	1	11388	1103	39	1		1	OTUD5	23	48780995	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	943980	48780995	106489565	161	60400										
PASD1	0	genome.wustl.edu	37	chrX	150789492	150789492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	ttattctcaaatttcctttaCtaaactcaggtatgtatatt	3	7	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	150789492	150789492	C	A	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	missense	c.298	p.L100I	0.000	pfscan_PAS	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	43	0	0	39	7	15.22	-	-	-	A	150789492	C	A	150789492	3	1	689	1	0	0	0	0	1	0	0	0	11544	564	20	4	312	4	PASD1	23	150789492	Missense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	102008497	150789492	4481068	162	60401										
GABRQ	0	genome.wustl.edu	37	chrX	151821057	151821057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	tctctccccatcaccccagcGcaggcccccctggcaagccc	7	23	2	0			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	151821057	151821057	G	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	silent	c.1212	p.A404	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	32	0	0	57	8	12.31	-	-	-	A	151821057	G	A	151821057	2	1	689	1	0	0	0	0	0	0	0	1	6224	1074	38	1		1	GABRQ	23	151821057	Silent	SNP	G	TCGA-D8-A1JK-01A-11D-A13L-09	1031565	151821057	3449503	163	60402										
G6PD	0	genome.wustl.edu	37	chrX	153760236	153760236	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.110429447852761	18	0.12311268215943	1.56575973967278	2.000693000693	1.44494494494494	0.0331084760142824	0.279138702948002	0	cagagcttgtgggggttcacCcacttgtaggtgccctcata	12	11	2	1			TCGA-D8-A1JK-01A-11D-A13L-09	TCGA-D8-A1JK-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fadaa39d-ebd2-4887-ae54-1fca12287fcf	e61906d0-87d8-4d8a-9ccb-a075759744ff	X	153760236	153760236	C	T	SNP	G6PD	ENST00000369620	human	ensembl	69_37n	-1	known	nonsense	c.1665	p.W555*	1.000	NULL	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211	11	0	0	11	15	57.69	-	-	-	T	153760236	C	T	153760236	4	4	689	1	0	0	0	0	0	1	0	0	6195	624	22	4	24	4	G6PD	23	153760236	Nonsense_Mutation	SNP	C	TCGA-D8-A1JK-01A-11D-A13L-09	1939179	153760236	1510324	164	60403										
UBR4	0	genome.wustl.edu	37	chr1	19494604	19494604	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ggcagactttggctacagagAgtccccaggtgtgcagcctg	14	11	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	19494604	19494604	A	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.3816	p.T1272	0.849	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	41	0	0	16	12	42.86	-	-	-	C	19494604	A	C	19494604	2	2	690	1	0	0	0	0	0	0	0	1	17001	291	11	5		5	UBR4	1	19494604	Silent	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		19494604	229756017	1	60404										
CDC20	0	genome.wustl.edu	37	chr1	43828729	43828729	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ggcgctgttttgagttggacCctgcgcggcggcgggagcgg	20	10	0	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	43828729	43828729	C	G	SNP	CDC20	ENST00000310955	human	ensembl	69_37n	1	known	missense	c.1429	p.P477A	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20	HGNC	ENSG00000117399	51	0	0	31	6	16.22	-	-	-	G	43828729	C	G	43828729	3	3	690	1	0	0	0	0	1	0	0	0	3088	623	22	4	1467	4	CDC20	1	43828729	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	24334125	43828729	205421892	2	60405										
LRRC7	0	genome.wustl.edu	37	chr1	70225882	70225882	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcgtttctctagtgcagtgcCtggagatgaccaccaaacgg	12	11	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	70225882	70225882	C	T	SNP	LRRC7	ENST00000310961	human	ensembl	69_37n	1	known	silent	c.10	p.L4	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	25	0	0	26	6	18.75	-	-	-	T	70225882	C	T	70225882	2	4	690	1	0	0	0	0	0	0	0	1	9086	696	24	4		4	LRRC7	1	70225882	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	26397153	70225882	179024739	3	60406										
C1orf173	0	genome.wustl.edu	37	chr1	75037347	75037347	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcctctgcggctgtttctgcCgtttcaccacctccgtgtag	9	15	3	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	75037347	75037347	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	silent	c.4047	p.T1349	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	148	0	0	108	52	32.5	-	-	-	A	75037347	C	A	75037347	2	1	690	1	0	0	0	0	0	0	0	1	2033	639	23	3		3	C1orf173	1	75037347	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	4811465	75037347	174213274	4	60407										
ZNF644	0	genome.wustl.edu	37	chr1	91383613	91383613	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	caatataggcatatacctgcAtcggagaatgtaaacctcgt	8	9	0	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	91383613	91383613	A	T	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.3787	p.C1263S	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	284	0	0	253	62	19.68	-	-	-	T	91383613	A	T	91383613	3	4	690	1	0	0	0	0	1	0	0	0	18156	217	8	5	204	5	ZNF644	1	91383613	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	16346266	91383613	157867008	5	60408										
VCAM1	0	genome.wustl.edu	37	chr1	101190442	101190442	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aaagaggtggaattaattgtTcaaggtgagtagaatgtgaa	13	1	1	4			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	101190442	101190442	T	A	SNP	VCAM1	ENST00000294728	human	ensembl	69_37n	1	known	silent	c.924	p.V308	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	161	0	0	80	44	35.48	-	-	-	A	101190442	T	A	101190442	2	1	690	1	0	0	0	0	0	0	0	1	17234	1770	62	5		5	VCAM1	1	101190442	Silent	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	9806829	101190442	148060179	6	60409										
MOV10	0	genome.wustl.edu	37	chr1	113232573	113232573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtcgggttcagaaggagccgGcacattctacattgcccgct	12	12	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	113232573	113232573	G	A	SNP	MOV10	ENST00000357443	human	ensembl	69_37n	1	known	missense	c.689	p.G230D	0.989	NULL	NULL	-	no_errors	MOV10	HGNC	ENSG00000155363	43	0	0	23	7	23.33	-	-	-	A	113232573	G	A	113232573	3	1	690	1	0	0	0	0	1	0	0	0	9790	1203	42	4	703	4	MOV10	1	113232573	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	12042131	113232573	136018048	7	60410										
FLG	0	genome.wustl.edu	37	chr1	152279767	152279767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aggaagcttcatggtgacgcGaccctgagtgcctggagccg	15	11	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	152279767	152279767	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7595	p.S2532L	0.001	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	258	0	0	258	306	54.26	-	-	-	A	152279767	G	A	152279767	3	1	690	1	0	0	0	0	1	0	0	0	5968	1059	37	1	4594	1	FLG	1	152279767	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	39047194	152279767	96970854	8	60411										
CFH	0	genome.wustl.edu	37	chr1	196643014	196643014	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctgtggacatcctggagataCtccttttggtacttttaccc	8	11	0	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	196643014	196643014	C	A	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.272	p.T91N	0.123	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	271	0	0	156	39	20	-	-	-	A	196643014	C	A	196643014	3	1	690	1	0	0	0	0	1	0	0	0	3312	565	20	4	282	4	CFH	1	196643014	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	44363247	196643014	52607607	9	60412										
LMOD1	0	genome.wustl.edu	37	chr1	201868906	201868906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cggtcagcgtgttgttctggAggagggcccggaagatggcc	18	9	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	201868906	201868906	A	G	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	missense	c.1235	p.L412P	0.980	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	194	0	0	147	58	28.29	-	-	-	G	201868906	A	G	201868906	3	3	690	1	0	0	0	0	1	0	0	0	8912	304	11	5	575	5	LMOD1	1	201868906	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	5225892	201868906	47381715	10	60413										
CR1	0	genome.wustl.edu	37	chr1	207697077	207697077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cctggaagcggagggagaaaGgtgtttgagcttgtgggtga	19	4	0	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	207697077	207697077	G	A	SNP	CR1	ENST00000529814	human	ensembl	69_37n	1	novel	missense	c.536	p.R179K	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CR1	HGNC	ENSG00000203710	105	0	0	94	23	19.66	-	-	-	A	207697077	G	A	207697077	3	1	690	1	0	0	0	0	1	0	0	0	3870	991	35	4	627	4	CR1	1	207697077	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	5828171	207697077	41553544	11	60414										
PARP1	0	genome.wustl.edu	37	chr1	226579990	226579990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cccagagtcttctctgccttGctaccaattccatcctggcc	6	17	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	226579990	226579990	G	T	SNP	PARP1	ENST00000366794	human	ensembl	69_37n	-1	known	missense	c.312	p.S104R	1.000	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	179	1	0.56	99	52	34.44	-	-	-	T	226579990	G	T	226579990	3	4	690	1	0	0	0	0	1	0	0	0	11527	1310	46	4	2816	4	PARP1	1	226579990	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	18882913	226579990	22670631	12	60415										
URB2	0	genome.wustl.edu	37	chr1	229771028	229771028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	atggacgcaggctggccaggGccagctgaggcaggtgctga	18	10	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	229771028	229771028	G	A	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.668	p.G223D	0.115	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	46	0	0	21	24	52.17	-	-	-	A	229771028	G	A	229771028	3	1	690	1	0	0	0	0	1	0	0	0	17122	1203	42	4	678	4	URB2	1	229771028	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	3191038	229771028	19479593	13	60416										
RAD51AP2	0	genome.wustl.edu	37	chr2	17696790	17696790	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tactaagtcaaattttctctTcatctcaaaatcttttacta	1	9	5	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	17696790	17696790	T	C	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	missense	c.2893	p.K965E	1.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	66	0	0	44	14	24.14	-	-	-	C	17696790	T	C	17696790	3	2	690	1	0	0	0	0	1	0	0	0	13070	1792	62	5	598	5	RAD51AP2	2	17696790	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09		17696790	225502583	14	60417										
BIRC6	0	genome.wustl.edu	37	chr2	32743984	32743984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcatttgccagtctcaacaaCattatcagatgttcttgaca	5	10	4	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	32743984	32743984	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.11594	p.T3865I	0.998	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	135	0	0	83	15	15.31	-	-	-	T	32743984	C	T	32743984	3	4	690	1	0	0	0	0	1	0	0	0	1443	478	17	4	11820	4	BIRC6	2	32743984	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	15047194	32743984	210455389	15	60418										
SPTBN1	0	genome.wustl.edu	37	chr2	54870174	54870174	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cccaggacatgtcttacgatGaagccagaaatctgcacagt	9	11	2	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	54870174	54870174	G	T	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	nonsense	c.3913	p.E1305*	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	51	0	0	57	9	13.64	-	-	-	T	54870174	G	T	54870174	4	4	690	1	0	0	0	0	0	1	0	0	15210	1291	45	2	4096	2	SPTBN1	2	54870174	Nonsense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	22126190	54870174	188329199	16	60419										
KDM3A	0	genome.wustl.edu	37	chr2	86718115	86718115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttcatcaagagtatggagttCaaggctgggctattgtacag	12	6	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	86718115	86718115	C	G	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.3685	p.Q1229E	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	114	0	0	103	12	10.43	-	-	-	G	86718115	C	G	86718115	3	3	690	1	0	0	0	0	1	0	0	0	8180	827	29	2	3775	2	KDM3A	2	86718115	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	31847941	86718115	156481258	17	60420										
ARHGAP15	0	genome.wustl.edu	37	chr2	144314050	144314050	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aagttaagatttattgtcaaCcaaggtaagtgatttccact	7	6	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	144314050	144314050	C	A	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	missense	c.999	p.N333K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	200	0	0	94	20	17.54	-	-	-	A	144314050	C	A	144314050	3	1	690	1	0	0	0	0	1	0	0	0	868	506	18	4	1037	4	ARHGAP15	2	144314050	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	57595935	144314050	98885323	18	60421										
SCN2A	0	genome.wustl.edu	37	chr2	166245597	166245597	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcttttttgtcagttacatcAtcatatccttcctggttgtg	6	9	4	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	166245597	166245597	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.5281	p.I1761F	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	227	0	0	117	99	45.83	-	-	-	T	166245597	A	T	166245597	3	4	690	1	0	0	0	0	1	0	0	0	14004	217	8	5	5479	5	SCN2A	2	166245597	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	21931547	166245597	76953776	19	60422										
UBR3	0	genome.wustl.edu	37	chr2	170751798	170751798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tggtaactttcttactcaacAtgcttccagatcaagagtat	6	9	3	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	170751798	170751798	A	G	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.1213	p.M405V	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	36	0	0	14	18	56.25	-	-	-	G	170751798	A	G	170751798	3	3	690	1	0	0	0	0	1	0	0	0	17000	217	8	5	1239	5	UBR3	2	170751798	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	4506201	170751798	72447575	20	60423										
DNAH7	0	genome.wustl.edu	37	chr2	196723282	196723282	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcagcatcgcactcatctttGatggctttggaagccatagc	9	11	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	196723282	196723282	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	silent	c.7983	p.I2661	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	136	0	0	102	59	36.65	-	-	-	A	196723282	G	A	196723282	2	1	690	1	0	0	0	0	0	0	0	1	4641	1280	45	2		2	DNAH7	2	196723282	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	25971484	196723282	46476091	21	60424										
HECW2	0	genome.wustl.edu	37	chr2	197081766	197081766	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtcgttgttcattgttgaatCtttccactgcagcccagaac	8	11	2	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	197081766	197081766	C	A	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.4460	p.R1487I	1.000	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	144	0	0	99	67	40.36	-	-	-	A	197081766	C	A	197081766	3	1	690	1	0	0	0	0	1	0	0	0	7094	913	32	2	270	2	HECW2	2	197081766	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	358484	197081766	46117607	22	60425										
PLCL1	0	genome.wustl.edu	37	chr2	198949886	198949886	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	agaagttgccttctgatccaGatgtgttagaaggagaagta	12	5	1	5			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	198949886	198949886	G	C	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.1645	p.D549H	0.004	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	59	0	0	36	6	14.29	-	-	-	C	198949886	G	C	198949886	3	2	690	1	0	0	0	0	1	0	0	0	12113	942	33	2	1651	2	PLCL1	2	198949886	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	1868120	198949886	44249487	23	60426										
MAP2	0	genome.wustl.edu	37	chr2	210565003	210565003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtcttttattttcaacagcaGcaggtggggaatcagctctg	11	8	4	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	210565003	210565003	G	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.4525	p.A1509T	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	138	0	0	92	27	22.69	-	-	-	A	210565003	G	A	210565003	3	1	690	1	0	0	0	0	1	0	0	0	9306	971	34	4	4551	4	MAP2	2	210565003	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	11615117	210565003	32634370	24	60427										
INHA	0	genome.wustl.edu	37	chr2	220437265	220437265	+	Frame_Shift_Del	DEL	C	C	-													0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtggggaccctggagtcaggCggctgccccgaagacatgcc							TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	220437265	220437265	C	-	DEL	INHA	ENST00000243786	human	ensembl	69_37n	1	known	frame_shift_del	c.169	p.R57fs	0.993	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	11	0	0	6	5	45.45	-	-	-	-	220437265	C	-	220437265	7	5	690	1	0	1	0	1	0	0	0	0	7794	759	27	0	171	0	INHA	2	220437265	Frame_Shift_Del	DEL	C	TCGA-D8-A1JL-01A-11D-A13L-09	9872262	220437265	22762108	25	60428										
STT3B	0	genome.wustl.edu	37	chr3	31665175	31665175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aatatctttaggcaggtaaaGtgaggaaacatgcaactgaa	10	5	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	31665175	31665175	G	A	SNP	STT3B	ENST00000295770	human	ensembl	69_37n	1	known	missense	c.1549	p.V517M	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527	147	0	0	126	32	20.25	-	-	-	A	31665175	G	A	31665175	3	1	690	1	0	0	0	0	1	0	0	0	15425	1029	36	4	1591	4	STT3B	3	31665175	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		31665175	166357255	26	60429										
CCRL2	0	genome.wustl.edu	37	chr3	46450435	46450435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttcacatcactaaactcatcGccaccacccactgctgcatc	3	18	3	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	46450435	46450435	G	A	SNP	CCRL2	ENST00000357392	human	ensembl	69_37n	1	known	missense	c.901	p.A301T	0.912	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797	98	0	0	85	49	36.03	-	-	-	A	46450435	G	A	46450435	3	1	690	1	0	0	0	0	1	0	0	0	2979	1087	38	1	907	1	CCRL2	3	46450435	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	14785260	46450435	151571995	27	60430										
LPP	0	genome.wustl.edu	37	chr3	188584023	188584023	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tgcaatgtgtgttccaagccCatcatggagcggattctccg	11	11	2	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	188584023	188584023	C	G	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	silent	c.1446	p.P482	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	119	0	0	139	22	13.66	-	-	-	G	188584023	C	G	188584023	2	3	690	1	0	0	0	0	0	0	0	1	8989	581	21	4		4	LPP	3	188584023	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	142133588	188584023	9438407	28	60431										
CCDC50	0	genome.wustl.edu	37	chr3	191093233	191093233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	caccaagatcgactttcaccCaagtcctcacaaaaagcagg	6	14	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	191093233	191093233	C	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	silent	c.831	p.P277	0.890	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	111	0	0	87	12	12.12	-	-	-	T	191093233	C	T	191093233	2	4	690	1	0	0	0	0	0	0	0	1	2847	581	21	4		4	CCDC50	3	191093233	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	2509210	191093233	6929197	29	60432										
CDS1	0	genome.wustl.edu	37	chr4	85538784	85538784	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttatagagtctatcattcttAtgatctaccatggtttagaa	6	6	4	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	85538784	85538784	A	T	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	1	known	missense	c.410	p.Y137F	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	157	0	0	95	34	26.36	-	-	-	T	85538784	A	T	85538784	3	4	690	1	0	0	0	0	1	0	0	0	3206	449	16	5	424	5	CDS1	4	85538784	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		85538784	105615492	30	60433										
ARHGAP24	0	genome.wustl.edu	37	chr4	86844830	86844830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gagatcggatgacagcaaatCatgaaagctacctcctcatg	9	10	2	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	86844830	86844830	C	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	missense	c.298	p.H100Y	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	64	0	0	34	14	29.17	-	-	-	T	86844830	C	T	86844830	3	4	690	1	0	0	0	0	1	0	0	0	875	826	29	2	308	2	ARHGAP24	4	86844830	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	1306046	86844830	104309446	31	60434										
CENPE	0	genome.wustl.edu	37	chr4	104061038	104061038	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tagctcatctctttctttagCtacaattcttatttcttcaa	2	10	6	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	104061038	104061038	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.6112	p.A2038P	0.555	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	215	0	0	146	43	22.75	-	-	-	G	104061038	C	G	104061038	3	3	690	1	0	0	0	0	1	0	0	0	3259	797	28	4	2041	4	CENPE	4	104061038	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	17216208	104061038	87093238	32	60435										
DNAH5	0	genome.wustl.edu	37	chr5	13735385	13735385	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	acctcgtaggtcatgtgctcGatgatattagcaatcctctt	8	10	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	13735385	13735385	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.11616	p.I3872	0.001	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	74	0	0	77	11	12.5	-	-	-	A	13735385	G	A	13735385	2	1	690	1	0	0	0	0	0	0	0	1	4640	1048	37	1		1	DNAH5	5	13735385	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		13735385	167179875	33	60436										
IL6ST	0	genome.wustl.edu	37	chr5	55237584	55237584	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tttgtcatttgcttctatttCcacaacacttacatcagtga	4	10	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	55237584	55237584	C	A	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	nonsense	c.2083	p.E695*	1.000	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	49	0	0	34	11	24.44	-	-	-	A	55237584	C	A	55237584	4	1	690	1	0	0	0	0	0	1	0	0	7757	864	30	2	677	2	IL6ST	5	55237584	Nonsense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	41502199	55237584	125677676	34	60437										
PCDHB1	0	genome.wustl.edu	37	chr5	140431880	140431880	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctagacgagggcaccaacaaAgcgataacttactctttagc	8	11	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	140431880	140431880	A	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.825	p.K275N	0.219	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	53	0	0	34	15	30.61	-	-	-	T	140431880	A	T	140431880	3	4	690	1	0	0	0	0	1	0	0	0	11607	69	3	5	827	5	PCDHB1	5	140431880	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	85194296	140431880	40483380	35	60438										
HLA-C	0	genome.wustl.edu	37	chr6	31239446	31239446	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcagcctgtgcctggcgcttGtacttctgtgtctcccggtc	11	14	3	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	31239446	31239446	G	A	SNP	HLA-C	ENST00000415537	human	ensembl	69_37n	-1	novel	nonsense	c.271	p.Q91*	0.025	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-C	HGNC	ENSG00000204525	96	0	0	69	18	20.69	-	-	-	A	31239446	G	A	31239446	4	1	690	1	0	0	0	0	0	1	0	0	7248	1372	48	4	855	4	HLA-C	6	31239446	Nonsense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		31239446	139875621	36	60439										
SLC2A12	0	genome.wustl.edu	37	chr6	134350198	134350198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tgatattcatctttcagggaGgatttgatcacagtgagttc	10	6	4	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	134350198	134350198	G	A	SNP	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	silent	c.765	p.S255	0.983	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	88	0	0	55	10	15.38	-	-	-	A	134350198	G	A	134350198	2	1	690	1	0	0	0	0	0	0	0	1	14630	987	35	4		4	SLC2A12	6	134350198	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	103110752	134350198	36764869	37	60440										
SMOC2	0	genome.wustl.edu	37	chr6	169053662	169053662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aacccgaccccagccataccCtagaggagcgggtggtgcac	12	15	0	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	169053662	169053662	C	G	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	1	known	missense	c.1072	p.L358V	1.000	pfam_SPARC/Testican_Ca-bd-dom,pfscan_EF_HAND_2	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	56	0	0	26	7	21.21	-	-	-	G	169053662	C	G	169053662	3	3	690	1	0	0	0	0	1	0	0	0	14891	680	24	4	1114	4	SMOC2	6	169053662	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	34703464	169053662	2061405	38	60441										
HOXA13	0	genome.wustl.edu	37	chr7	27238809	27238809	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttccagaggtggggaggctgCgcctgctctttggggcagta	17	9	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	27238809	27238809	C	G	SNP	HOXA13	ENST00000222753	human	ensembl	69_37n	-1	known	silent	c.888	p.A296	1.000	superfamily_Homeodomain-like	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031	70	0	0	16	4	20	-	-	-	G	27238809	C	G	27238809	2	3	690	1	0	0	0	0	0	0	0	1	7342	755	27	3		3	HOXA13	7	27238809	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09		27238809	131899854	39	60442										
CPVL	0	genome.wustl.edu	37	chr7	29135737	29135737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	acaggtcatgttacttgtgaCaacataaggcccatgttcca	8	10	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	29135737	29135737	C	A	SNP	CPVL	ENST00000265394	human	ensembl	69_37n	-1	known	missense	c.385	p.V129F	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066	53	0	0	41	11	21.15	-	-	-	A	29135737	C	A	29135737	3	1	690	1	0	0	0	0	1	0	0	0	3865	478	17	4	1085	4	CPVL	7	29135737	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	1896928	29135737	130002926	40	60443										
WNT2	0	genome.wustl.edu	37	chr7	116955248	116955248	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcaatgttatcactgcagccAccccaatcaaaaatgccttt	4	13	3	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	116955248	116955248	A	G	SNP	WNT2	ENST00000265441	human	ensembl	69_37n	-1	known	silent	c.465	p.G155	0.995	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	166	0	0	148	58	28.16	-	-	-	G	116955248	A	G	116955248	2	3	690	1	0	0	0	0	0	0	0	1	17483	146	6	5		5	WNT2	7	116955248	Silent	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	87819511	116955248	42183415	41	60444										
KCND2	0	genome.wustl.edu	37	chr7	119915360	119915360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	actgccctgtggagagcggtAtgctgtggccttcttctgct	13	11	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	119915360	119915360	A	G	SNP	KCND2	ENST00000331113	human	ensembl	69_37n	1	known	missense	c.674	p.Y225C	1.000	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	112	0	0	103	38	26.95	-	-	-	G	119915360	A	G	119915360	3	3	690	1	0	0	0	0	1	0	0	0	8073	449	16	5	676	5	KCND2	7	119915360	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	2960112	119915360	39223303	42	60445										
GRM8	0	genome.wustl.edu	37	chr7	126079180	126079180	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ccatttccctgtttcagattGaatgattgctgtaactgata	7	8	1	4			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	126079180	126079180	G	C	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	nonsense	c.2720	p.S907*	1.000	prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	327	0	0	267	49	15.51	-	-	-	C	126079180	G	C	126079180	4	2	690	1	0	0	0	0	0	1	0	0	6854	1294	45	2	10	2	GRM8	7	126079180	Nonsense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	6163820	126079180	33059483	43	60446										
SVOPL	0	genome.wustl.edu	37	chr7	138363783	138363783	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tgacaggctctgttggcttgGttgccatcttctaaatagct	10	9	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	138363783	138363783	G	T	SNP	SVOPL	ENST00000419765	human	ensembl	69_37n	-1	known	missense	c.8	p.T3N	0.053	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SVOPL	HGNC	ENSG00000157703	129	0	0	97	14	12.61	-	-	-	T	138363783	G	T	138363783	3	4	690	1	0	0	0	0	1	0	0	0	15515	1261	44	4	1530	4	SVOPL	7	138363783	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	12284603	138363783	20774880	44	60447										
RAB19	0	genome.wustl.edu	37	chr7	140110775	140110775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtgttcctttaaaatcagaaCagttcggccagtattatcac	7	9	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	140110775	140110775	C	A	SNP	RAB19	ENST00000275874	human	ensembl	69_37n	1	known	missense	c.204	p.N68K	0.017	pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB19	HGNC	ENSG00000146955	100	0	0	89	12	11.88	-	-	-	A	140110775	C	A	140110775	3	1	690	1	0	0	0	0	1	0	0	0	12987	493	17	4		4	RAB19	7	140110775	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	1746992	140110775	19027888	45	60448										
ARHGEF35	0	genome.wustl.edu	37	chr7	143884086	143884086	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcaaaaaggagcccagtagaGaaatgggctggtgagagcat	14	6	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	143884086	143884086	G	T	SNP	ARHGEF35	ENST00000378115	human	ensembl	69_37n	-1	known	missense	c.1391	p.S464Y	0.010	NULL	NULL	-	no_errors	ARHGEF35	HGNC	ENSG00000213214	48	0	0	18	9	33.33	-	-	-	T	143884086	G	T	143884086	3	4	690	1	0	0	0	0	1	0	0	0	907	942	33	2	67	2	ARHGEF35	7	143884086	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	3773311	143884086	15254577	46	60449										
PAXIP1	0	genome.wustl.edu	37	chr7	154753359	154753359	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aatccagtcacagaaataatCtaagaaaaaaagagaaaata	5	5	2	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	154753359	154753359	C	G	SNP	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	splice_site	c.2128-1	e11-1	1.000	-	-	-	no_errors	PAXIP1	HGNC	ENSG00000157212	90	0	0	69	26	27.37	-	-	-	G	154753359	C	G	154753359	5	3	690	1	0	0	0	0	0	0	1	0	11560	927	32	2	1126	2	PAXIP1	7	154753359	Splice_Site	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	10869273	154753359	4385304	47	60450										
CSMD1	0	genome.wustl.edu	37	chr8	3224613	3224613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	agtctgatataaaccgaagcTgggcagtgaagtttccaaac	10	8	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	3224613	3224613	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.3059	p.Q1020R	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	109	0	0	76	20	20.83	-	-	-	C	3224613	T	C	3224613	3	2	690	1	0	0	0	0	1	0	0	0	3976	1580	55	5	7842	5	CSMD1	8	3224613	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09		3224613	143139409	48	60451										
POLR3D	0	genome.wustl.edu	37	chr8	22106154	22106154	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	catggaggtggacatacctgCtgtgaaaggtactctgtcgg	14	8	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	22106154	22106154	C	G	SNP	POLR3D	ENST00000397802	human	ensembl	69_37n	1	known	missense	c.647	p.A216G	0.001	NULL	pfam_RNA_pol_III_Rpc4	-	no_errors	POLR3D	HGNC	ENSG00000168495	61	0	0	36	8	18.18	-	-	-	G	22106154	C	G	22106154	3	3	690	1	0	0	0	0	1	0	0	0	12305	797	28	4	665	4	POLR3D	8	22106154	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	18881541	22106154	124257868	49	60452										
RHOBTB2	0	genome.wustl.edu	37	chr8	22862905	22862905	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtgctggaacgctcccgagaCgtggtagatgatgtcagcgt	15	9	1	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	22862905	22862905	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	silent	c.213	p.D71	0.989	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	72	0	0	53	14	20.9	-	-	-	T	22862905	C	T	22862905	2	4	690	1	0	0	0	0	0	0	0	1	13418	535	19	1		1	RHOBTB2	8	22862905	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	756751	22862905	123501117	50	60453										
ARFGEF1	0	genome.wustl.edu	37	chr8	68123739	68123739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tgctgtagatttaattttgcTgacttcttcattaacagcag	7	7	2	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	68123739	68123739	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.4798	p.S1600G	0.765	NULL	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	47	0	0	64	8	11.11	-	-	-	C	68123739	T	C	68123739	3	2	690	1	0	0	0	0	1	0	0	0	854	1580	55	5	775	5	ARFGEF1	8	68123739	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	45260834	68123739	78240283	51	60454										
RPL8	0	genome.wustl.edu	37	chr8	146016828	146016829	+	Frame_Shift_Ins	INS	-	-	GG													0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cctccaggcagcacacgattINSgtaccctcaggcatggtgcc							TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	146016828	146016829	-	GG	INS	RPL8	ENST00000262584	human	ensembl	69_37n	-1	known	frame_shift_ins	c.333_332	p.I112fs	0.997:1.000	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016	31	0	0	23	6	20.69	-	-	-	GG	146016829	-	GG	146016828	7	5	690	1	0	1	1	0	0	0	0	0	13688	1799	63	0	452	0	RPL8	8	146016828	Frame_Shift_Ins	INS	-	TCGA-D8-A1JL-01A-11D-A13L-09	77893089	146016828	347194	52	60455										
FBXO10	0	genome.wustl.edu	37	chr9	37521593	37521593	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtgattaatactgttagactCaacaagagctatggtgatgg	11	5	1	4			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	37521593	37521593	C	G	SNP	FBXO10	ENST00000432825	human	ensembl	69_37n	-1	known	missense	c.2173	p.E725Q	1.000	smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom_cyclin-like,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912	56	0	0	7	10	58.82	-	-	-	G	37521593	C	G	37521593	3	3	690	1	0	0	0	0	1	0	0	0	5772	835	29	2	713	2	FBXO10	9	37521593	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09		37521593	103691838	53	60456										
SHB	0	genome.wustl.edu	37	chr9	37948743	37948743	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctcctctgctgatggctccgTgataccatctgtggagaggg	13	11	2	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	37948743	37948743	T	G	SNP	SHB	ENST00000377707	human	ensembl	69_37n	-1	known	missense	c.1235	p.H412P	1.000	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SHB	HGNC	ENSG00000107338	44	0	0	27	11	28.95	-	-	-	G	37948743	T	G	37948743	3	3	690	1	0	0	0	0	1	0	0	0	14357	1696	59	5	302	5	SHB	9	37948743	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	427150	37948743	103264688	54	60457										
KIF27	0	genome.wustl.edu	37	chr9	86514613	86514613	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tttgcgcttctttcaaagatAcagcatgccctttgttttcc	6	11	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	86514613	86514613	A	G	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.1565	p.V522A	0.101	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	168	0	0	165	23	12.23	-	-	-	G	86514613	A	G	86514613	3	3	690	1	0	0	0	0	1	0	0	0	8348	391	14	5	2696	5	KIF27	9	86514613	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	48565870	86514613	54698818	55	60458										
CDHR1	0	genome.wustl.edu	37	chr10	85970822	85970822	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcggatgttgtgatccagctCctggacaccaatgacaatgt	11	10	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	85970822	85970822	C	G	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	silent	c.1386	p.L462	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	55	0	0	30	14	31.82	-	-	-	G	85970822	C	G	85970822	2	3	690	1	0	0	0	0	0	0	0	1	3147	842	30	2		2	CDHR1	10	85970822	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09		85970822	49563925	56	60459										
RBP4	0	genome.wustl.edu	37	chr10	95353681	95353681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcaggccgttggggtcccggGaaaacacgaaggagtagctg	17	9	0	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	95353681	95353681	G	A	SNP	RBP4	ENST00000371464	human	ensembl	69_37n	-1	known	missense	c.467	p.S156F	0.993	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Retinol-bd,prints_Lipocalin	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Retinol-bd,prints_Lipocalin	-	no_errors	RBP4	HGNC	ENSG00000138207	45	0	0	31	7	18.42	-	-	-	A	95353681	G	A	95353681	3	1	690	1	0	0	0	0	1	0	0	0	13241	1174	41	2	146	2	RBP4	10	95353681	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	9382859	95353681	40181066	57	60460										
ABLIM1	0	genome.wustl.edu	37	chr10	116233707	116233707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	taaatactttccgaggatgtCctggtaggctgtaaaataaa	9	6	0	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	116233707	116233707	C	T	SNP	ABLIM1	ENST00000392955	human	ensembl	69_37n	-1	known	missense	c.776	p.G259E	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABLIM1	HGNC	ENSG00000099204	112	0	0	53	10	15.87	-	-	-	T	116233707	C	T	116233707	3	4	690	1	0	0	0	0	1	0	0	0	94	854	30	2	1342	2	ABLIM1	10	116233707	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	20880026	116233707	19301040	58	60461										
SNX32	0	genome.wustl.edu	37	chr11	65620233	65620233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	agctgtgctgccaacgcttcGagcgcctctccgactccgcc	10	18	1	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	65620233	65620233	G	A	SNP	SNX32	ENST00000308342	human	ensembl	69_37n	1	known	missense	c.1045	p.E349K	0.999	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803	26	0	0	15	5	25	-	-	-	A	65620233	G	A	65620233	3	1	690	1	0	0	0	0	1	0	0	0	14991	1059	37	1	1087	1	SNX32	11	65620233	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		65620233	69386283	59	60462										
FUT4	0	genome.wustl.edu	37	chr11	94278568	94278568	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cagcacctggattatatcacCgagaagctctggcgcaacgc	10	13	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	94278568	94278568	C	A	SNP	FUT4	ENST00000358752	human	ensembl	69_37n	1	known	silent	c.1269	p.T423	0.004	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT4	HGNC	ENSG00000196371	28	0	0	13	11	45.83	-	-	-	A	94278568	C	A	94278568	2	1	690	1	0	0	0	0	0	0	0	1	6155	639	23	3		3	FUT4	11	94278568	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	28658335	94278568	40727948	60	60463										
C11orf88	0	genome.wustl.edu	37	chr11	111385611	111385611	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ggctcctcggaacaagatgcCaacttggctaagcagttctg	11	11	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	111385611	111385611	C	G	SNP	C11orf88	ENST00000529167	human	ensembl	69_37n	1	known	silent	c.102	p.A34	0.000	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644	39	0	0	40	6	13.04	-	-	-	G	111385611	C	G	111385611	2	3	690	1	0	0	0	0	0	0	0	1	1681	581	21	4		4	C11orf88	11	111385611	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	17107043	111385611	23620905	61	60464										
HYOU1	0	genome.wustl.edu	37	chr11	118926221	118926221	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcaccatgcttgctgcactgTctccaaagaatctttcattt	5	12	4	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	118926221	118926221	T	C	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.248	p.D83G	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	72	0	0	61	25	29.07	-	-	-	C	118926221	T	C	118926221	3	2	690	1	0	0	0	0	1	0	0	0	7524	1667	58	5	2843	5	HYOU1	11	118926221	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	7540610	118926221	16080295	62	60465										
OR6T1	0	genome.wustl.edu	37	chr11	123813968	123813968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aagccaccagtttcagcaggTgggtgtccccacaagaaagc	11	12	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	123813968	123813968	T	C	SNP	OR6T1	ENST00000321252	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	33	0	0	29	6	17.14	-	-	-	C	123813968	T	C	123813968	3	2	690	1	0	0	0	0	1	0	0	0	11283	1696	59	5	396	5	OR6T1	11	123813968	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	4887747	123813968	11192548	63	60466										
OR10G9	0	genome.wustl.edu	37	chr11	123894114	123894114	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	cagttacccgctcaggtacaCcagcatgatgagtgggagca	12	11	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	123894114	123894114	C	A	SNP	OR10G9	ENST00000375024	human	ensembl	69_37n	1	known	missense	c.395	p.T132N	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981	106	0	0	66	79	54.48	-	-	-	A	123894114	C	A	123894114	3	1	690	1	0	0	0	0	1	0	0	0	10977	507	18	4	397	4	OR10G9	11	123894114	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	80146	123894114	11112402	64	60467										
DYRK4	0	genome.wustl.edu	37	chr12	4721739	4721739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tctcttcgcatgaccccggaCcaggccctcaagcatgcttg	9	16	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	4721739	4721739	C	A	SNP	DYRK4	ENST00000010132	human	ensembl	69_37n	1	known	missense	c.1176	p.D392E	0.812	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	60	0	0	47	15	24.19	-	-	-	A	4721739	C	A	4721739	3	1	690	1	0	0	0	0	1	0	0	0	4893	506	18	4	1214	4	DYRK4	12	4721739	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09		4721739	129130156	65	60468										
TWF1	0	genome.wustl.edu	37	chr12	44191587	44191587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctcgagaaatgggaaatgctActccttgtagtgtttgatgc	11	7	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	44191587	44191587	A	G	SNP	TWF1	ENST00000325127	human	ensembl	69_37n	-1	known	missense	c.635	p.V212A	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF1	HGNC	ENSG00000151239	115	0	0	68	19	21.84	-	-	-	G	44191587	A	G	44191587	3	3	690	1	0	0	0	0	1	0	0	0	16878	391	14	5	535	5	TWF1	12	44191587	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09	39469848	44191587	89660308	66	60469										
SLC17A8	0	genome.wustl.edu	37	chr12	100796149	100796149	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	attatttggtacatgttttgGctgttgcaggcctatgagtg	12	5	0	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	100796149	100796149	G	A	SNP	SLC17A8	ENST00000323346	human	ensembl	69_37n	1	known	nonsense	c.795	p.W265*	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	217	0	0	133	35	20.71	-	-	-	A	100796149	G	A	100796149	4	1	690	1	0	0	0	0	0	1	0	0	14512	1212	42	4	821	4	SLC17A8	12	100796149	Nonsense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	56604562	100796149	33055746	67	60470										
TAOK3	0	genome.wustl.edu	37	chr12	118615098	118615098	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctgctgggccaagatctgttGctggaacttcttctcatctg	10	11	4	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	118615098	118615098	G	T	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	missense	c.1603	p.Q535K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	228	1	0.44	162	41	20.2	-	-	-	T	118615098	G	T	118615098	3	4	690	1	0	0	0	0	1	0	0	0	15641	1328	46	4	1117	4	TAOK3	12	118615098	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	17818949	118615098	15236797	68	60471										
KNTC1	0	genome.wustl.edu	37	chr12	123107016	123107016	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tgtcattctatagattagaaGtctgattttgaataatatca	6	4	4	4			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	123107016	123107016	G	C	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.6377	p.S2126T	0.908	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	63	0	0	61	10	14.08	-	-	-	C	123107016	G	C	123107016	3	2	690	1	0	0	0	0	1	0	0	0	8481	1029	36	4	6619	4	KNTC1	12	123107016	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	4491918	123107016	10744879	69	60472										
RIMBP2	0	genome.wustl.edu	37	chr12	130941040	130941040	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcggaaggtccaggcgcttaCctttgccgagggaggtggct	17	10	0	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	130941040	130941040	C	G	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	splice_site	c.307+1	e2+1	1.000	-	-	-	no_errors	RIMBP2	HGNC	ENSG00000060709	23	0	0	4	7	63.64	-	-	-	G	130941040	C	G	130941040	5	3	690	1	0	0	0	0	0	0	1	0	13447	521	18	4	2914	4	RIMBP2	12	130941040	Splice_Site	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	7834024	130941040	2910855	70	60473										
NBEA	0	genome.wustl.edu	37	chr13	35770032	35770032	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcatttccagacaccataaaAgaaaaagaaacaccaactcc	4	12	0	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	13	35770032	35770032	A	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.4959	p.K1653N	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	11	0	0	5	4	44.44	-	-	-	T	35770032	A	T	35770032	3	4	690	1	0	0	0	0	1	0	0	0	10259	69	3	5	5081	5	NBEA	13	35770032	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		35770032	79399846	71	60474										
MCF2L	0	genome.wustl.edu	37	chr13	113742701	113742701	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttcggaaagtgctgaccagcCagctgcaggcttgtagaggt	14	9	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	13	113742701	113742701	C	G	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	missense	c.2920	p.Q974E	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	67	0	0	124	27	17.88	-	-	-	G	113742701	C	G	113742701	3	3	690	1	0	0	0	0	1	0	0	0	9450	595	21	4	3109	4	MCF2L	13	113742701	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	77972669	113742701	1427177	72	60475										
RNASE7	0	genome.wustl.edu	37	chr14	21511331	21511331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gccatgaaaaacattaacaaGcacacaaaacggtgcaaaga	7	9	0	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	21511331	21511331	G	A	SNP	RNASE7	ENST00000298690	human	ensembl	69_37n	1	known	silent	c.180	p.K60	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE7	HGNC	ENSG00000165799	99	0	0	56	51	47.22	-	-	-	A	21511331	G	A	21511331	2	1	690	1	0	0	0	0	0	0	0	1	13494	962	34	4		4	RNASE7	14	21511331	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		21511331	85838209	73	60476										
TGFB3	0	genome.wustl.edu	37	chr14	76446997	76446997	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctctccccatgcatctcctcCagcagctcccgggtgctgtt	8	18	2	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	76446997	76446997	C	A	SNP	TGFB3	ENST00000238682	human	ensembl	69_37n	-1	known	silent	c.240	p.L80	1.000	pfam_TGF-b_N,pirsf_TGF-beta,prints_Transform_grow_fac_b3	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699	124	0	0	110	29	20.86	-	-	-	A	76446997	C	A	76446997	2	1	690	1	0	0	0	0	0	0	0	1	15914	581	21	4		4	TGFB3	14	76446997	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	54935666	76446997	30902543	74	60477										
ANGEL1	0	genome.wustl.edu	37	chr14	77274333	77274333	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gttccaattgaggatgtctgGatggcaatgtagatagagct	13	5	1	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	77274333	77274333	G	C	SNP	ANGEL1	ENST00000251089	human	ensembl	69_37n	-1	known	missense	c.808	p.P270A	0.359	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523	98	0	0	41	17	29.31	-	-	-	C	77274333	G	C	77274333	3	2	690	1	0	0	0	0	1	0	0	0	608	1174	41	2	1236	2	ANGEL1	14	77274333	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	827336	77274333	30075207	75	60478										
BCL11B	0	genome.wustl.edu	37	chr14	99640525	99640525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gctcgattttgacgtcgttaGtcagcaagtgctcgccgtgc	12	11	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	99640525	99640525	G	T	SNP	BCL11B	ENST00000357195	human	ensembl	69_37n	-1	known	missense	c.2648	p.T883N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152	72	0	0	43	7	14	-	-	-	T	99640525	G	T	99640525	3	4	690	1	0	0	0	0	1	0	0	0	1368	1029	36	4	40	4	BCL11B	14	99640525	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	22366192	99640525	7709015	76	60479										
EIF2AK4	0	genome.wustl.edu	37	chr15	40308734	40308734	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ctacaagtttattgaacagaAgggagatttgcaagatctta	9	5	1	4			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	40308734	40308734	A	C	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.3791	p.K1264T	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	106	0	0	76	14	15.56	-	-	-	C	40308734	A	C	40308734	3	2	690	1	0	0	0	0	1	0	0	0	5034	72	3	5	3901	5	EIF2AK4	15	40308734	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		40308734	62222658	77	60480										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84651456	84651456	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	accacagcgaagccaatagtTtgggagtcacatggcacaaa	10	10	1	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	84651456	84651456	T	C	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.3076	p.L1026	0.209	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	75	0	0	50	9	15.25	-	-	-	C	84651456	T	C	84651456	2	2	690	1	0	0	0	0	0	0	0	1	276	1838	64	5		5	ADAMTSL3	15	84651456	Silent	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	44342722	84651456	17879936	78	60481										
CHD2	0	genome.wustl.edu	37	chr15	93540500	93540500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tagatactgcttaacctgtcGtgtcaaagctgcacattttg	8	9	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	93540500	93540500	G	A	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.3752	p.R1251H	0.999	superfamily_Homeodomain-like	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	198	0	0	92	15	14.02	-	-	-	A	93540500	G	A	93540500	3	1	690	1	0	0	0	0	1	0	0	0	3354	1145	40	1	3870	1	CHD2	15	93540500	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	8889044	93540500	8990892	79	60482										
DNAH3	0	genome.wustl.edu	37	chr16	20970646	20970646	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gttgatcattttggcagcaaTagggccttggccttggccaa	12	9	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	16	20970646	20970646	T	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.10681	p.I3561V	0.994	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	121	0	0	84	28	25	-	-	-	C	20970646	T	C	20970646	3	2	690	1	0	0	0	0	1	0	0	0	4639	1406	49	5	1704	5	DNAH3	16	20970646	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09		20970646	69384107	80	60483										
PABPN1L	0	genome.wustl.edu	37	chr16	88932941	88932941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ccccccagccctgggcctcaGggtctgaggagaccgtctgg	14	16	3	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	16	88932941	88932941	G	T	SNP	PABPN1L	ENST00000427766	human	ensembl	69_37n	-1	known	missense	c.74	p.P25H	0.733	NULL	NULL	-	no_errors	PABPN1L	HGNC	ENSG00000205022	56	0	0	18	13	41.94	-	-	-	T	88932941	G	T	88932941	3	4	690	1	0	0	0	0	1	0	0	0	11442	1000	35	4	822	4	PABPN1L	16	88932941	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	67962295	88932941	1421812	81	60484										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	7578271	7578271	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193L	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	111	0	0	63	48	43.24	-	-	-	A	7578271	T	A	7578271	3	1	690	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09		7578271	73616939	82	60485										
MYH8	0	genome.wustl.edu	37	chr17	10300124	10300124	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aagcagtctgggccaccttgTcaaagttcctttgcttctta	8	11	3	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	10300124	10300124	T	C	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4358	p.D1453G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	148	0	0	116	25	17.73	-	-	-	C	10300124	T	C	10300124	3	2	690	1	0	0	0	0	1	0	0	0	10113	1667	58	5	1495	5	MYH8	17	10300124	Missense_Mutation	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	2721853	10300124	70895086	83	60486										
SLC13A2	0	genome.wustl.edu	37	chr17	26818766	26818766	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aggctcttcccccaaaacggCaacgtggtgaacttcgcctc	9	15	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	26818766	26818766	C	A	SNP	SLC13A2	ENST00000444914	human	ensembl	69_37n	1	known	silent	c.921	p.G307	0.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216	118	0	0	73	24	24.74	-	-	-	A	26818766	C	A	26818766	2	1	690	1	0	0	0	0	0	0	0	1	14481	697	25	4		4	SLC13A2	17	26818766	Silent	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	16518642	26818766	54376444	84	60487										
RFFL	0	genome.wustl.edu	37	chr17	33348610	33348610	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcaccagctcttctttctccCggcacatttcggtagagatg	9	13	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	33348610	33348610	C	G	SNP	RFFL	ENST00000315249	human	ensembl	69_37n	-1	known	missense	c.371	p.R124P	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RFFL	HGNC	ENSG00000092871	64	0	0	64	12	15.79	-	-	-	G	33348610	C	G	33348610	3	3	690	1	0	0	0	0	1	0	0	0	13333	652	23	3	740	3	RFFL	17	33348610	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	6529844	33348610	47846600	85	60488										
KRT20	0	genome.wustl.edu	37	chr17	39034526	39034526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tccgaatctgcatcagttggGcctccagagagctcaacagc	10	13	3	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	39034526	39034526	G	T	SNP	KRT20	ENST00000167588	human	ensembl	69_37n	-1	known	missense	c.1010	p.A337D	0.029	pfam_F,prints_Keratin_I	pfam_F,prints_Keratin_I	-	no_errors	KRT20	HGNC	ENSG00000171431	200	0	0	116	34	22.67	-	-	-	T	39034526	G	T	39034526	3	4	690	1	0	0	0	0	1	0	0	0	8511	1203	42	4	276	4	KRT20	17	39034526	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	5685916	39034526	42160684	86	60489										
RAB37	0	genome.wustl.edu	37	chr17	72725505	72725505	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	actgtgggcatcggattcacGgtaagcactggccggcactg	14	11	1	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	72725505	72725505	G	A	SNP	RAB37	ENST00000402449	human	ensembl	69_37n	1	known	silent	c.183	p.T61	0.972	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794	81	0	0	76	14	15.56	-	-	-	A	72725505	G	A	72725505	2	1	690	1	0	0	0	0	0	0	0	1	13010	1130	39	1		1	RAB37	17	72725505	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09	33690979	72725505	8469705	87	60490										
CDH7	0	genome.wustl.edu	37	chr18	63476962	63476962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tcactctgatgttgataaagGagatggttccatcaaataca	8	7	3	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	18	63476962	63476962	G	C	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	missense	c.233	p.G78A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	90	0	0	64	16	20	-	-	-	C	63476962	G	C	63476962	3	2	690	1	0	0	0	0	1	0	0	0	3144	1174	41	2	239	2	CDH7	18	63476962	Missense_Mutation	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		63476962	14600286	88	60491										
MBD3L1	0	genome.wustl.edu	37	chr19	8953820	8953820	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	ttactgaggaagatatcaggAaacaggaagggaaagtgaag	14	3	1	3			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	19	8953820	8953820	A	C	SNP	MBD3L1	ENST00000305625	human	ensembl	69_37n	1	known	missense	c.466	p.K156Q	0.034	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948	29	0	0	21	10	32.26	-	-	-	C	8953820	A	C	8953820	3	2	690	1	0	0	0	0	1	0	0	0	9416	247	9	5	468	5	MBD3L1	19	8953820	Missense_Mutation	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		8953820	50175163	89	60492										
ZNF682	0	genome.wustl.edu	37	chr19	20117638	20117638	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	acatttgtatggtttctctcCagtgtgaattctcttatgtt	7	7	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	19	20117638	20117638	C	A	SNP	ZNF682	ENST00000397165	human	ensembl	69_37n	-1	known	nonsense	c.673	p.G225*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124	92	0	0	121	27	18.12	-	-	-	A	20117638	C	A	20117638	4	1	690	1	0	0	0	0	0	1	0	0	18185	603	21	4	827	4	ZNF682	19	20117638	Nonsense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09	11163818	20117638	39011345	90	60493										
MYT1	0	genome.wustl.edu	37	chr20	62871224	62871224	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gcctgagccaggccctcatcCaaagtctcgccaatatccgc	8	17	2	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	20	62871224	62871224	C	A	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.3286	p.Q1096K	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	39	0	0	10	19	65.52	-	-	-	A	62871224	C	A	62871224	3	1	690	1	0	0	0	0	1	0	0	0	10178	595	21	4	3283	4	MYT1	20	62871224	Missense_Mutation	SNP	C	TCGA-D8-A1JL-01A-11D-A13L-09		62871224	154296	91	60494										
TMPRSS15	0	genome.wustl.edu	37	chr21	19666941	19666941	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	tttatggttacactgtaaccGaatcaaggaatcctgtaaac	7	8	1	0			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	21	19666941	19666941	G	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	silent	c.2290	p.R764	0.701	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	120	0	0	50	27	35.06	-	-	-	T	19666941	G	T	19666941	2	4	690	1	0	0	0	0	0	0	0	1	16341	1057	37	3		3	TMPRSS15	21	19666941	Silent	SNP	G	TCGA-D8-A1JL-01A-11D-A13L-09		19666941	28462954	92	60495										
GPR174	0	genome.wustl.edu	37	chrX	78427212	78427212	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	aagatgattctaacctgtgcAggggtattcctaatttgctt	9	7	1	2			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	X	78427212	78427212	A	G	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	1	known	silent	c.708	p.A236	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	104	0	0	63	15	19.23	-	-	-	G	78427212	A	G	78427212	2	3	690	1	0	0	0	0	0	0	0	1	6722	175	7	5		5	GPR174	23	78427212	Silent	SNP	A	TCGA-D8-A1JL-01A-11D-A13L-09		78427212	76843348	93	60496										
IDS	0	genome.wustl.edu	37	chrX	148568556	148568556	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.074468085106383	7	0.849235287128748	1.03640500568828	1.63642895634992	0.54073304644606	0.34984520123839	0.950412796697626	0	gtccttccaggaacatagaaTatcaggggaacatgggtagc	12	8	1	1			TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	X	148568556	148568556	T	G	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.1080	p.I360	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	61	0	0	35	14	28.57	-	-	-	G	148568556	T	G	148568556	2	3	690	1	0	0	0	0	0	0	0	1	7557	1396	49	5		5	IDS	23	148568556	Silent	SNP	T	TCGA-D8-A1JL-01A-11D-A13L-09	70141344	148568556	6702004	94	60497										
HDAC1	0	genome.wustl.edu	37	chr1	32796496	32796496	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	acagctgtggccctggatacGgagatccctaatggtaatag	12	9	0	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	1	32796496	32796496	G	T	SNP	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	silent	c.966	p.T322	0.529	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	84	0	0	77	36	31.58	-	-	-	T	32796496	G	T	32796496	2	4	691	1	0	0	0	0	0	0	0	1	7055	1103	39	3		3	HDAC1	1	32796496	Silent	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09		32796496	216454125	1	60498										
YY1AP1	0	genome.wustl.edu	37	chr1	155630341	155630341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	taaaacagtggctggctgtaTtgggtgaggaatccggagca	15	6	0	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	1	155630341	155630341	T	C	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.1774	p.I592V	0.784	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	100	0	0	114	43	27.39	-	-	-	C	155630341	T	C	155630341	3	2	691	1	0	0	0	0	1	0	0	0	17605	1493	52	5	896	5	YY1AP1	1	155630341	Missense_Mutation	SNP	T	TCGA-D8-A1JM-01A-11D-A13L-09	122833845	155630341	93620280	2	60499										
OR2T10	0	genome.wustl.edu	37	chr1	248756685	248756685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gagcacagagtaacggagagGatggcagatagccacatagc	14	8	0	3			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	1	248756685	248756685	G	T	SNP	OR2T10	ENST00000330500	human	ensembl	69_37n	-1	known	missense	c.385	p.P129T	0.996	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T10	HGNC	ENSG00000184022	102	0	0	173	50	22.32	-	-	-	T	248756685	G	T	248756685	3	4	691	1	0	0	0	0	1	0	0	0	11090	1174	41	2	556	2	OR2T10	1	248756685	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	93126344	248756685	493936	3	60500										
COL4A3	0	genome.wustl.edu	37	chr2	228163516	228163516	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	actgcaggagacatgggaccAccaggtcgtctggtgagtat	14	9	1	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	2	228163516	228163516	A	G	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	silent	c.3870	p.P1290	0.968	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	26	0	0	24	15	38.46	-	-	-	G	228163516	A	G	228163516	2	3	691	1	0	0	0	0	0	0	0	1	3721	146	6	5		5	COL4A3	2	228163516	Silent	SNP	A	TCGA-D8-A1JM-01A-11D-A13L-09		228163516	15035857	4	60501										
ZMYND10	0	genome.wustl.edu	37	chr3	50379059	50379059	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	agcgcttagaagcctctgcaCtgcagtaagcacagcggggc	13	12	1	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	3	50379059	50379059	C	G	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	missense	c.1193	p.S398T	0.079	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	97	0	0	22	56	71.79	-	-	-	G	50379059	C	G	50379059	3	3	691	1	0	0	0	0	1	0	0	0	17801	565	20	4	137	4	ZMYND10	3	50379059	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		50379059	147643371	5	60502										
NLGN1	0	genome.wustl.edu	37	chr3	173322406	173322406	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	accatggcactgcccagatgCacgtggccaaattatgtttg	10	11	0	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	3	173322406	173322406	C	A	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	nonsense	c.18	p.C6*	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	136	0	0	78	129	62.32	-	-	-	A	173322406	C	A	173322406	4	1	691	1	0	0	0	0	0	1	0	0	10533	718	25	4	20	4	NLGN1	3	173322406	Nonsense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	122943347	173322406	24700024	6	60503										
TRDN	0	genome.wustl.edu	37	chr6	123892166	123892166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gaagccaggctgcaggggagCtgaacgtcgtcactatgtct	14	10	2	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	6	123892166	123892166	C	T	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.134	p.S45N	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	55	0	0	73	39	34.82	-	-	-	T	123892166	C	T	123892166	3	4	691	1	0	0	0	0	1	0	0	0	16564	797	28	4	2215	4	TRDN	6	123892166	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		123892166	47222901	7	60504										
FRMD1	0	genome.wustl.edu	37	chr6	168462600	168462600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tggaccgccaggtgcaccccGtgtagtaaaccagcttctgt	11	13	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	6	168462600	168462600	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	69_37n	-1	known	missense	c.932	p.T311M	0.996	pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	45	0	0	24	16	38.1	-	-	-	A	168462600	G	A	168462600	3	1	691	1	0	0	0	0	1	0	0	0	6098	1145	40	1	733	1	FRMD1	6	168462600	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	44570434	168462600	2652467	8	60505										
WDR27	0	genome.wustl.edu	37	chr6	170070709	170070709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gtttccagcacacacggcaaCaacatgatcatccaggctca	7	14	2	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	6	170070709	170070709	C	A	SNP	WDR27	ENST00000448612	human	ensembl	69_37n	-1	known	missense	c.412	p.V138F	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR27	HGNC	ENSG00000184465	63	0	0	78	58	42.65	-	-	-	A	170070709	C	A	170070709	3	1	691	1	0	0	0	0	1	0	0	0	17381	478	17	4	2249	4	WDR27	6	170070709	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	1608109	170070709	1044358	9	60506										
LUC7L2	0	genome.wustl.edu	37	chr7	139094326	139094326	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	aagagagtcgtagctgagaaGcaggagaaaagaaaccagga	14	5	0	4			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	7	139094326	139094326	G	C	SNP	LUC7L2	ENST00000541515	human	ensembl	69_37n	1	known	missense	c.903	p.K301N	1.000	pfam_LUC7-rel	pfam_LUC7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000146963	79	0	0	56	45	44.55	-	-	-	C	139094326	G	C	139094326	3	2	691	1	0	0	0	0	1	0	0	0	9149	962	34	4	731	4	LUC7L2	7	139094326	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09		139094326	20044337	10	60507										
NOS3	0	genome.wustl.edu	37	chr7	150697610	150697610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tggctgtctgcatggacctgGatacccggaccacctcgtcc	11	15	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	7	150697610	150697610	G	T	SNP	NOS3	ENST00000297494	human	ensembl	69_37n	1	known	missense	c.1156	p.D386Y	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	61	0	0	60	36	37.5	-	-	-	T	150697610	G	T	150697610	3	4	691	1	0	0	0	0	1	0	0	0	10616	1174	41	2	1190	2	NOS3	7	150697610	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	11603284	150697610	8441053	11	60508										
CHD7	0	genome.wustl.edu	37	chr8	61777880	61777880	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gatgcgaagaaccctgctgcTgtgctgcccctgatgctgcc	12	14	0	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	8	61777880	61777880	T	A	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	silent	c.8382	p.A2794	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	60	0	0	35	32	47.76	-	-	-	A	61777880	T	A	61777880	2	1	691	1	0	0	0	0	0	0	0	1	3359	1567	55	5		5	CHD7	8	61777880	Silent	SNP	T	TCGA-D8-A1JM-01A-11D-A13L-09		61777880	84586142	12	60509										
CHMP4C	0	genome.wustl.edu	37	chr8	82670443	82670443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ataagaagatgacaaatatcCgccttccaaatgtgccttcc	6	11	0	3			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	8	82670443	82670443	C	T	SNP	CHMP4C	ENST00000297265	human	ensembl	69_37n	1	known	missense	c.550	p.R184C	0.007	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP4C	HGNC	ENSG00000164695	103	0	0	134	51	27.57	-	-	-	T	82670443	C	T	82670443	3	4	691	1	0	0	0	0	1	0	0	0	3387	652	23	1	564	1	CHMP4C	8	82670443	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	20892563	82670443	63693579	13	60510										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18892387	18892387	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	acacttcttcctctccccagGtggatggtgacctcctggtc	9	15	2	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	9	18892387	18892387	G	T	SNP	ADAMTSL1	ENST00000380545	human	ensembl	69_37n	1	putative	silent	c.747	p.R249	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	42	0	0	13	4	23.53	-	-	-	T	18892387	G	T	18892387	2	4	691	1	0	0	0	0	0	0	0	1	274	1275	44	4		4	ADAMTSL1	9	18892387	Silent	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09		18892387	122321044	14	60511										
NFX1	0	genome.wustl.edu	37	chr9	33364082	33364082	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ttcttcagggtcaaaattcaGtgatagtttgaaagaagatg	10	4	4	4			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	9	33364082	33364082	G	T	SNP	NFX1	ENST00000379540	human	ensembl	69_37n	1	known	missense	c.2948	p.S983I	1.000	smart_R3H_ss-bd	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102	144	0	0	33	112	77.24	-	-	-	T	33364082	G	T	33364082	3	4	691	1	0	0	0	0	1	0	0	0	10459	1029	36	4	3108	4	NFX1	9	33364082	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	14471695	33364082	107849349	15	60512										
FRMD4A	0	genome.wustl.edu	37	chr10	13699219	13699219	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ctggctgagcccagtgcgccCgccgcccgctgccgctgcct	13	20	0	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	10	13699219	13699219	C	T	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	silent	c.2370	p.A790	0.131	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	14	0	0	4	6	60	-	-	-	T	13699219	C	T	13699219	2	4	691	1	0	0	0	0	0	0	0	1	6100	639	23	1		1	FRMD4A	10	13699219	Silent	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		13699219	121835528	16	60513										
EXOC6	0	genome.wustl.edu	37	chr10	94679793	94679793	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ctgtttatcgatgtttgcacAtttattctgttttggtaagt	8	5	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	10	94679793	94679793	A	G	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	missense	c.922	p.I308V	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	284	0	0	213	126	37.06	-	-	-	G	94679793	A	G	94679793	3	3	691	1	0	0	0	0	1	0	0	0	5344	217	8	5	994	5	EXOC6	10	94679793	Missense_Mutation	SNP	A	TCGA-D8-A1JM-01A-11D-A13L-09	80980574	94679793	40854954	17	60514										
CLEC4C	0	genome.wustl.edu	37	chr12	7894054	7894054	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tccatgacgcaggtcaggctTggatgatactgttgatactc	11	9	1	3			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	12	7894054	7894054	T	A	SNP	CLEC4C	ENST00000360345	human	ensembl	69_37n	-1	known	silent	c.198	p.P66	0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4C	HGNC	ENSG00000198178	136	0	0	457	78	14.58	-	-	-	A	7894054	T	A	7894054	2	1	691	1	0	0	0	0	0	0	0	1	3543	1799	63	5		5	CLEC4C	12	7894054	Silent	SNP	T	TCGA-D8-A1JM-01A-11D-A13L-09		7894054	125957841	18	60515										
KRT81	0	genome.wustl.edu	37	chr12	52682214	52682215	+	Frame_Shift_Ins	INS	-	-	T													0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	cgttggcctccaggtctgacINSttgcggaggtaggcgcagtc							TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	12	52682214	52682215	-	T	INS	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	frame_shift_ins	c.666_665	p.S223fs	0.668:0.994	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	114	0	0	87	47	35.07	-	-	-	T	52682215	-	T	52682214	7	5	691	1	0	1	1	0	0	0	0	0	8548	564	20	0	875	0	KRT81	12	52682214	Frame_Shift_Ins	INS	-	TCGA-D8-A1JM-01A-11D-A13L-09	44788160	52682214	81169681	19	60516										
NEUROD4	0	genome.wustl.edu	37	chr12	55420713	55420713	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tgctgtgtaaagggctctctCagcccacaagcaacctggtg	11	12	2	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	12	55420713	55420713	C	T	SNP	NEUROD4	ENST00000242994	human	ensembl	69_37n	1	known	nonsense	c.490	p.Q164*	1.000	pfam_Neurogenic_DUF,superfamily_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD4	HGNC	ENSG00000123307	44	0	0	28	18	39.13	-	-	-	T	55420713	C	T	55420713	4	4	691	1	0	0	0	0	0	1	0	0	10422	827	29	2	492	2	NEUROD4	12	55420713	Nonsense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	2738499	55420713	78431182	20	60517										
SLC5A11	0	genome.wustl.edu	37	chr16	24921651	24921651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gccacctgacctggtttactCgtcacgaccccgtggtccag	10	16	1	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	16	24921651	24921651	C	T	SNP	SLC5A11	ENST00000347898	human	ensembl	69_37n	1	known	missense	c.1675	p.R559C	0.996	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865	79	0	0	118	58	32.95	-	-	-	T	24921651	C	T	24921651	3	4	691	1	0	0	0	0	1	0	0	0	14752	884	31	1	1729	1	SLC5A11	16	24921651	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		24921651	65433102	21	60518										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	102	0	0	30	59	65.56	-	-	-	T	7577120	C	T	7577120	3	4	691	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		7577120	73618090	22	60519										
MYH1	0	genome.wustl.edu	37	chr17	10419585	10419585	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ggctcgtgtagatgagtcatCatggccatgtcctcgatctt	11	10	3	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	10419585	10419585	C	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.279	p.M93I	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	333	0	0	310	200	39.22	-	-	-	A	10419585	C	A	10419585	3	1	691	1	0	0	0	0	1	0	0	0	10101	826	29	2	5688	2	MYH1	17	10419585	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	2842465	10419585	70775625	23	60520										
COASY	0	genome.wustl.edu	37	chr17	40714971	40714971	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tccagaatctcgcccacccgCcagaagtcgtgttgacagat	9	14	1	4			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	40714971	40714971	C	A	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	missense	c.418	p.P140T	1.000	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	50	0	0	8	34	80.95	-	-	-	A	40714971	C	A	40714971	3	1	691	1	0	0	0	0	1	0	0	0	3682	739	26	4	424	4	COASY	17	40714971	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	30295386	40714971	40480239	24	60521										
CNTNAP1	0	genome.wustl.edu	37	chr17	40847798	40847798	+	Silent	SNP	C	C	G													0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	aacgttacgggagaggaggtCtccttcagcttcagcaccag							TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	40847798	40847798	C	G	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	silent	c.3252	p.V1084	0.988	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	94	0	0	16	30	65.22	-	-	-	G	40847798	C	G	40847798	2	3	691	1	0	0	0	0	0	0	0	1	3676	900	32	2		2	CNTNAP1	17	40847798	Silent	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	132827	40847798	40347412	25	60522	448	2								
CNTNAP1	0	genome.wustl.edu	37	chr17	40847799	40847799	+	Missense_Mutation	SNP	T	T	G													0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	acgttacgggagaggaggtcTccttcagcttcagcaccagc							TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	40847799	40847799	T	G	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.3253	p.S1085A	0.992	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	94	0	0	16	30	65.22	-	-	-	G	40847799	T	G	40847799	3	3	691	1	0	0	0	0	1	0	0	0	3676	1551	54	5	3327	5	CNTNAP1	17	40847799	Missense_Mutation	SNP	T	TCGA-D8-A1JM-01A-11D-A13L-09	1	40847799	40347411	26	60523	448	2								
KIF2B	0	genome.wustl.edu	37	chr17	51900535	51900535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	atccacctcgctgtggtcacGgagatcaacagagaaaacta	9	11	2	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	51900535	51900535	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	silent	c.141	p.T47	0.072	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	70	0	0	11	36	76.6	-	-	-	A	51900535	G	A	51900535	2	1	691	1	0	0	0	0	0	0	0	1	8350	1103	39	1		1	KIF2B	17	51900535	Silent	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	11052736	51900535	29294675	27	60524										
CA4	0	genome.wustl.edu	37	chr17	58235472	58235472	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ccactggtggaggcactgtcTaatatccccaaacctggtga	10	12	1	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	17	58235472	58235472	T	C	SNP	CA4	ENST00000586876	human	ensembl	69_37n	1	known	nonstop	c.319	p.*107Q	0.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA4	HGNC	ENSG00000167434	41	0	0	4	5	55.56	-	-	-	C	58235472	T	C	58235472	4	2	691	1	0	0	0	0	0	0	0	0	2543	1509	53	5	586	5	CA4	17	58235472	Nonstop_Mutation	SNP	T	TCGA-D8-A1JM-01A-11D-A13L-09	6334937	58235472	22959738	28	60525										
STK11	0	genome.wustl.edu	37	chr19	1218492	1218492	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tgttatacaacgaagagaagCagaaaatatatcctttccgg	8	7	0	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	19	1218492	1218492	C	T	SNP	STK11	ENST00000326873	human	ensembl	69_37n	1	known	nonsense	c.367	p.Q123*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK11	HGNC	ENSG00000118046	91	0	0	12	40	76.92	-	-	-	T	1218492	C	T	1218492	4	4	691	1	0	0	0	0	0	1	0	0	15378	711	25	4	373	4	STK11	19	1218492	Nonsense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		1218492	57910491	29	60526										
XAB2	0	genome.wustl.edu	37	chr19	7688749	7688749	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tgctcgaagcgggccaggcgCagctccaggtccacatcatc	12	15	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	19	7688749	7688749	C	G	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	silent	c.987	p.L329	0.997	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	37	0	0	17	11	39.29	-	-	-	G	7688749	C	G	7688749	2	3	691	1	0	0	0	0	0	0	0	1	17515	697	25	4		4	XAB2	19	7688749	Silent	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	6470257	7688749	51440234	30	60527										
LPAR2	0	genome.wustl.edu	37	chr19	19735340	19735340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gcctaaaccatccaggagcaGtaccacctggcctggtgtcc	10	15	0	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	19	19735340	19735340	G	A	SNP	LPAR2	ENST00000407877	human	ensembl	69_37n	-1	known	silent	c.781	p.L261	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_LPA_rcpt_EDG4,prints_7TM_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt,prints_S1P_rcpt	-	no_errors	LPAR2	HGNC	ENSG00000064547	32	0	0	32	25	43.86	-	-	-	A	19735340	G	A	19735340	2	1	691	1	0	0	0	0	0	0	0	1	8971	1020	36	4		4	LPAR2	19	19735340	Silent	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	12046591	19735340	39393643	31	60528										
RALGAPB	0	genome.wustl.edu	37	chr20	37177429	37177429	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ttacccagaggagcaaaagcAaatcagaaggtattcatcag	9	8	3	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	20	37177429	37177429	A	T	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	1	known	silent	c.3000	p.A1000	0.996	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	100	0	0	87	57	39.58	-	-	-	T	37177429	A	T	37177429	2	4	691	1	0	0	0	0	0	0	0	1	13098	117	5	5		5	RALGAPB	20	37177429	Silent	SNP	A	TCGA-D8-A1JM-01A-11D-A13L-09		37177429	25848091	32	60529										
LAMA5	0	genome.wustl.edu	37	chr20	60886769	60886769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tcgggggcccctcaggctgcGgctggagctcggggggtggt	21	11	1	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	20	60886769	60886769	G	T	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.9707	p.P3236Q	0.003	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	24	0	0	5	6	54.55	-	-	-	T	60886769	G	T	60886769	3	4	691	1	0	0	0	0	1	0	0	0	8663	1116	39	3	1420	3	LAMA5	20	60886769	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	23709340	60886769	2138751	33	60530										
MYT1	0	genome.wustl.edu	37	chr20	62863610	62863612	+	In_Frame_Del	DEL	GCA	GCA	-													0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tgcccactggccgcccgcagGcagaaggaagggtccctcaa							TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	20	62863610	62863612	GCA	-	DEL	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	in_frame_del	c.2850_2852	p.Q951in_frame_del	1.000:1.000:1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	61	0	0	5	15	71.43	-	-	-	-	62863612	GCA	-	62863610	7	5	691	1	0	1	0	1	0	0	0	0	10178	1194	42	0	2835	0	MYT1	20	62863610	In_Frame_Del	DEL	GCA	TCGA-D8-A1JM-01A-11D-A13L-09	1976841	62863610	161910	34	60531										
USP25	0	genome.wustl.edu	37	chr21	17242407	17242407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gagtggcatcaggattatagGaaattcagggaaacaactat	11	5	2	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	21	17242407	17242407	G	A	SNP	USP25	ENST00000449491	human	ensembl	69_37n	1	putative	missense	c.512	p.G171E	0.924	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	USP25	HGNC	ENSG00000155313	65	0	0	39	17	30.36	-	-	-	A	17242407	G	A	17242407	3	1	691	1	0	0	0	0	1	0	0	0	17153	1165	41	2	2698	2	USP25	21	17242407	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09		17242407	30887488	35	60532										
PIWIL3	0	genome.wustl.edu	37	chr22	25131779	25131779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	ctcctgctatagagtatgagCcaactatgtagtggcattgc	10	9	0	2			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	22	25131779	25131779	C	A	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.1530	p.W510C	0.944	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	160	0	0	33	63	65.62	-	-	-	A	25131779	C	A	25131779	3	1	691	1	0	0	0	0	1	0	0	0	12033	740	26	4	1154	4	PIWIL3	22	25131779	Missense_Mutation	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09		25131779	26172787	36	60533										
ZC3H12B	0	genome.wustl.edu	37	chrX	64721696	64721696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	atgcacctacggccacaagtGcaaatactaccatccggagc	8	14	0	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	X	64721696	64721696	G	A	SNP	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	missense	c.1118	p.C373Y	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	15	0	0	17	5	22.73	-	-	-	A	64721696	G	A	64721696	3	1	691	1	0	0	0	0	1	0	0	0	17658	1319	46	4	1136	4	ZC3H12B	23	64721696	Missense_Mutation	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09		64721696	90548864	37	60534										
CD99L2	0	genome.wustl.edu	37	chrX	149999738	149999738	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	gtttctttcactgcatcctcCaggttaaaatcatcaaagtc	5	11	4	0			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	X	149999738	149999738	C	T	SNP	CD99L2	ENST00000370377	human	ensembl	69_37n	-1	known	silent	c.96	p.L32	0.918	NULL	pfam_CD99L2	-	no_errors	CD99L2	HGNC	ENSG00000102181	112	0	0	106	63	37.28	-	-	-	T	149999738	C	T	149999738	2	4	691	1	0	0	0	0	0	0	0	1	3080	581	21	4		4	CD99L2	23	149999738	Silent	SNP	C	TCGA-D8-A1JM-01A-11D-A13L-09	85278042	149999738	5270822	38	60535										
BCAP31	0	genome.wustl.edu	37	chrX	152986328	152986328	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0263157894736842	1	1	0.515212981744422	0	0.625615763546798	1	1	0	tcagccatagctcactcaccGatgaccaacagcacaaggat	7	14	3	1			TCGA-D8-A1JM-01A-11D-A13L-09	TCGA-D8-A1JM-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f66d4178-34f3-4f5d-aa0a-7fdd03801033	cc160618-dacb-4809-92d6-78503671cd60	X	152986328	152986328	G	A	SNP	BCAP31	ENST00000458587	human	ensembl	69_37n	-1	known	silent	c.393	p.I131	0.222	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825	77	0	0	78	41	34.45	-	-	-	A	152986328	G	A	152986328	2	1	691	1	0	0	0	0	0	0	0	1	1351	1072	37	1		1	BCAP31	23	152986328	Silent	SNP	G	TCGA-D8-A1JM-01A-11D-A13L-09	2986590	152986328	2284232	39	60536										
UBIAD1	0	genome.wustl.edu	37	chr1	11345847	11345847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tccccctcgccctcagcaccGaggccattctccattccaac	5	21	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	11345847	11345847	G	A	SNP	UBIAD1	ENST00000376810	human	ensembl	69_37n	1	known	missense	c.676	p.E226K	1.000	pfam_UbiA_prenyltransferase	pfam_UbiA_prenyltransferase	-	no_errors	UBIAD1	HGNC	ENSG00000120942	44	0	0	47	42	47.19	-	-	-	A	11345847	G	A	11345847	3	1	692	1	0	0	0	0	1	0	0	0	16982	1059	37	1	682	1	UBIAD1	1	11345847	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		11345847	237904774	1	60537										
CSMD2	0	genome.wustl.edu	37	chr1	34006792	34006792	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tgcagctcagcacagatactCtatgtgactccatcatatag	7	11	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	34006792	34006792	C	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.9395	p.R3132I	0.853	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	54	0	0	65	52	44.44	-	-	-	A	34006792	C	A	34006792	3	1	692	1	0	0	0	0	1	0	0	0	3977	913	32	2	1548	2	CSMD2	1	34006792	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	22660945	34006792	215243829	2	60538										
GRIK3	0	genome.wustl.edu	37	chr1	37267521	37267521	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ccgggaagccggcggtcattGaatgtgtgcatgttgatgac	15	8	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	37267521	37267521	G	A	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	silent	c.2691	p.F897	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	53	0	0	39	24	38.1	-	-	-	A	37267521	G	A	37267521	2	1	692	1	0	0	0	0	0	0	0	1	6826	1281	45	2		2	GRIK3	1	37267521	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	3260729	37267521	211983100	3	60539										
TESK2	0	genome.wustl.edu	37	chr1	45821062	45821062	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	taggccagttttaccctcacAgtccaaggcaaatgcaggtt	9	11	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	45821062	45821062	A	T	SNP	TESK2	ENST00000372086	human	ensembl	69_37n	-1	known	silent	c.453	p.T151	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759	74	0	0	59	74	55.64	-	-	-	T	45821062	A	T	45821062	2	4	692	1	0	0	0	0	0	0	0	1	15863	175	7	5		5	TESK2	1	45821062	Silent	SNP	A	TCGA-D8-A1JN-01A-11D-A13L-09	8553541	45821062	203429559	4	60540										
RPF1	0	genome.wustl.edu	37	chr1	84945165	84945165	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cagcggcgacacttaatgttCacgcggtggaaacagcagca	12	11	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	84945165	84945165	C	T	SNP	RPF1	ENST00000370654	human	ensembl	69_37n	1	known	silent	c.201	p.F67	1.000	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF1	HGNC	ENSG00000117133	16	0	0	8	4	33.33	-	-	-	T	84945165	C	T	84945165	2	4	692	1	0	0	0	0	0	0	0	1	13632	825	29	2		2	RPF1	1	84945165	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	39124103	84945165	164305456	5	60541										
MAGI3	0	genome.wustl.edu	37	chr1	114165576	114165576	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctacaagtgaaaaatgtgctGaaagatggtcccgcagctca	10	9	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	114165576	114165576	G	A	SNP	MAGI3	ENST00000369611	human	ensembl	69_37n	1	known	silent	c.1320	p.L440	0.956	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI3	HGNC	ENSG00000081026	71	0	0	59	39	39.8	-	-	-	A	114165576	G	A	114165576	2	1	692	1	0	0	0	0	0	0	0	1	9263	1277	45	2		2	MAGI3	1	114165576	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	29220411	114165576	135085045	6	60542										
CSDE1	0	genome.wustl.edu	37	chr1	115284280	115284280	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gatgacacagtaaaaacgttCtccatctcaaacagctgtta	6	10	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	115284280	115284280	C	T	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	silent	c.6	p.E2	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	93	0	0	69	63	47.73	-	-	-	T	115284280	C	T	115284280	2	4	692	1	0	0	0	0	0	0	0	1	3961	912	32	2		2	CSDE1	1	115284280	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1118704	115284280	133966341	7	60543										
SV2A	0	genome.wustl.edu	37	chr1	149885119	149885119	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atattccccttcatagatctCatcatcctcgtcatggccct	4	15	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	149885119	149885119	C	T	SNP	SV2A	ENST00000369146	human	ensembl	69_37n	-1	known	missense	c.274	p.E92K	1.000	tigrfam_SV2_chordata	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2A	HGNC	ENSG00000159164	16	0	0	65	26	28.57	-	-	-	T	149885119	C	T	149885119	3	4	692	1	0	0	0	0	1	0	0	0	15508	835	29	2	2002	2	SV2A	1	149885119	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	34600839	149885119	99365502	8	60544										
MCL1	0	genome.wustl.edu	37	chr1	150550932	150550932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcgagacaacgatttcacatCgtcttcgtttttgatgtcca	7	10	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	150550932	150550932	C	T	SNP	MCL1	ENST00000369026	human	ensembl	69_37n	-1	known	missense	c.724	p.D242N	1.000	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Apop_reg_Mc1	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Apop_reg_Mc1,prints_Bcl2_BH	-	no_errors	MCL1	HGNC	ENSG00000143384	57	0	0	74	33	30.84	-	-	-	T	150550932	C	T	150550932	3	4	692	1	0	0	0	0	1	0	0	0	9455	884	31	1	347	1	MCL1	1	150550932	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	665813	150550932	98699689	9	60545										
SNX27	0	genome.wustl.edu	37	chr1	151630881	151630881	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttagatgcccgacgtcggggAttggaagaatatctagaaaa	12	6	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	151630881	151630881	A	T	SNP	SNX27	ENST00000368843	human	ensembl	69_37n	1	known	silent	c.714	p.G238	0.368	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376	48	0	0	57	37	38.95	-	-	-	T	151630881	A	T	151630881	2	4	692	1	0	0	0	0	0	0	0	1	14986	320	12	5		5	SNX27	1	151630881	Silent	SNP	A	TCGA-D8-A1JN-01A-11D-A13L-09	1079949	151630881	97619740	10	60546										
KIRREL	0	genome.wustl.edu	37	chr1	158054238	158054238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cagaggacaccaggattgacGgaggccctgtgattctactg	13	10	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	158054238	158054238	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.379	p.G127R	0.990	pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	27	0	0	96	33	25.58	-	-	-	A	158054238	G	A	158054238	3	1	692	1	0	0	0	0	1	0	0	0	8377	1117	39	1	393	1	KIRREL	1	158054238	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6423357	158054238	91196383	11	60547										
OR10Z1	0	genome.wustl.edu	37	chr1	158576979	158576979	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accttacagtggtcattattCattatggctgtgcttccttc	7	10	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	158576979	158576979	C	T	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	1	known	missense	c.751	p.H251Y	0.986	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	54	0	0	105	55	34.38	-	-	-	T	158576979	C	T	158576979	3	4	692	1	0	0	0	0	1	0	0	0	10996	826	29	2	753	2	OR10Z1	1	158576979	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	522741	158576979	90673642	12	60548										
SPTA1	0	genome.wustl.edu	37	chr1	158615335	158615335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agttaagtcttcggccagctCctgtgatgataccatgccac	9	12	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	158615335	158615335	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.3946	p.E1316K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	68	0	0	100	47	31.97	-	-	-	T	158615335	C	T	158615335	3	4	692	1	0	0	0	0	1	0	0	0	15207	864	30	2	3413	2	SPTA1	1	158615335	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	38356	158615335	90635286	13	60549										
GORAB	0	genome.wustl.edu	37	chr1	170508363	170508363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttacatagatccatttgaacCacagcgacgtctccccgcga	7	14	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	170508363	170508363	C	T	SNP	GORAB	ENST00000367763	human	ensembl	69_37n	1	known	missense	c.149	p.P50L	1.000	NULL	pfam_Golgin_RAB6-interacting	-	no_errors	GORAB	HGNC	ENSG00000120370	32	0	0	50	17	25.37	-	-	-	T	170508363	C	T	170508363	3	4	692	1	0	0	0	0	1	0	0	0	6623	594	21	4	155	4	GORAB	1	170508363	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	11893028	170508363	78742258	14	60550										
PPP1R12B	0	genome.wustl.edu	37	chr1	202418189	202418189	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtctcttctagcaccccgctCtgtgtgatcaccaatcgccc	7	17	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	202418189	202418189	C	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	silent	c.1740	p.L580	0.959	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	73	0	0	140	55	28.21	-	-	-	A	202418189	C	A	202418189	2	1	692	1	0	0	0	0	0	0	0	1	12432	900	32	2		2	PPP1R12B	1	202418189	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	31909826	202418189	46832432	15	60551										
TLR5	0	genome.wustl.edu	37	chr1	223284238	223284238	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tattgagtgtccaggtgtttGagcaaagcattctgcaccca	10	9	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	223284238	223284238	G	C	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	silent	c.2136	p.L712	0.525	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	26	0	0	44	10	18.52	-	-	-	C	223284238	G	C	223284238	2	2	692	1	0	0	0	0	0	0	0	1	16049	1277	45	2		2	TLR5	1	223284238	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	20866049	223284238	25966383	16	60552										
ACBD3	0	genome.wustl.edu	37	chr1	226334330	226334330	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tttatctagtataatagactCtgtagtagactgattttgac	7	5	2	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	226334330	226334330	C	G	SNP	ACBD3	ENST00000366812	human	ensembl	69_37n	-1	known	missense	c.1568	p.R523T	1.000	superfamily_GOLD,pfscan_GOLD	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827	36	0	0	68	27	28.42	-	-	-	G	226334330	C	G	226334330	3	3	692	1	0	0	0	0	1	0	0	0	123	913	32	2	22	2	ACBD3	1	226334330	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	3050092	226334330	22916291	17	60553										
TAF5L	0	genome.wustl.edu	37	chr1	229738611	229738611	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accaggttgagatggaggtaGacaaagagaggatagaggag	17	3	0	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	1	229738611	229738611	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	69_37n	-1	known	silent	c.303	p.V101	1.000	pfam_TFIID-su_WD40-assoc_reg	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5L	HGNC	ENSG00000135801	18	0	0	25	10	28.57	-	-	-	A	229738611	G	A	229738611	2	1	692	1	0	0	0	0	0	0	0	1	15621	929	33	2		2	TAF5L	1	229738611	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	3404281	229738611	19512010	18	60554										
PCYOX1	0	genome.wustl.edu	37	chr2	70486522	70486522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agccggaattggtggcacttCagcagcctattacctgcggc	12	12	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	70486522	70486522	C	T	SNP	PCYOX1	ENST00000433351	human	ensembl	69_37n	1	known	missense	c.143	p.S48L	0.987	pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005	105	1	0.94	73	61	45.52	-	-	-	T	70486522	C	T	70486522	3	4	692	1	0	0	0	0	1	0	0	0	11681	838	29	2	149	2	PCYOX1	2	70486522	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		70486522	172712851	19	60555										
POLR1A	0	genome.wustl.edu	37	chr2	86260895	86260895	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttctttttgatggattccatCagaagtttaaagaatctaaa	6	5	3	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	86260895	86260895	C	G	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	silent	c.4050	p.L1350	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	69	0	0	39	45	53.57	-	-	-	G	86260895	C	G	86260895	2	3	692	1	0	0	0	0	0	0	0	1	12283	813	29	2		2	POLR1A	2	86260895	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	15774373	86260895	156938478	20	60556										
ZC3H6	0	genome.wustl.edu	37	chr2	113089006	113089006	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gaactgagagaaaaagctttCttaatacctttggatgcctc	8	8	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	113089006	113089006	C	G	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.2511	p.F837L	0.960	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	31	0	0	4	18	81.82	-	-	-	G	113089006	C	G	113089006	3	3	692	1	0	0	0	0	1	0	0	0	17667	912	32	2	2557	2	ZC3H6	2	113089006	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	26828111	113089006	130110367	21	60557										
HS6ST1	0	genome.wustl.edu	37	chr2	129075961	129075961	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttctcgtagtgggggtcgggTgtggggaacaggtccaggtc	19	7	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	129075961	129075961	T	C	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	silent	c.177	p.T59	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	9	0	0	2	7	77.78	-	-	-	C	129075961	T	C	129075961	2	2	692	1	0	0	0	0	0	0	0	1	7421	1683	59	5		5	HS6ST1	2	129075961	Silent	SNP	T	TCGA-D8-A1JN-01A-11D-A13L-09	15986955	129075961	114123412	22	60558										
THSD7B	0	genome.wustl.edu	37	chr2	138000073	138000073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctgtgcgcccctgttttctcCcatgcaaaaaagactgtatt	7	12	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	138000073	138000073	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.2197	p.P733S	1.000	smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	79	0	0	114	98	46.23	-	-	-	T	138000073	C	T	138000073	3	4	692	1	0	0	0	0	1	0	0	0	15975	623	22	4	2138	4	THSD7B	2	138000073	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	8924112	138000073	105199300	23	60559										
TTN	0	genome.wustl.edu	37	chr2	179499240	179499240	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtcagatgacttaattatatCaggtcctttggaccatataa	7	7	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	179499240	179499240	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34564	p.D11522H	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0	30	29	49.15	-	-	-	G	179499240	C	G	179499240	3	3	692	1	0	0	0	0	1	0	0	0	16832	826	29	2	65957	2	TTN	2	179499240	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	41499167	179499240	63700133	24	60560										
TTN	0	genome.wustl.edu	37	chr2	179649010	179649010	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gccttcaccgatttggtgatCttctgagcagaagatgtggc	12	9	3	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	179649010	179649010	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.2562	p.K854N	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	30	0	0	24	26	52	-	-	-	G	179649010	C	G	179649010	3	3	692	1	0	0	0	0	1	0	0	0	16832	912	32	2	108814	2	TTN	2	179649010	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	149770	179649010	63550363	25	60561										
ALS2CR11	0	genome.wustl.edu	37	chr2	202410312	202410312	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcttcaggatgattacttttCgtgttttcagatgcctcatc	7	9	4	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	202410312	202410312	C	T	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	silent	c.1116	p.T372	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	61	0	0	46	29	38.67	-	-	-	T	202410312	C	T	202410312	2	4	692	1	0	0	0	0	0	0	0	1	552	871	31	1		1	ALS2CR11	2	202410312	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	22761302	202410312	40789061	26	60562										
FN1	0	genome.wustl.edu	37	chr2	216284067	216284067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atacttctcccatgaatctcCaatttgataaaacgtcccag	4	12	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	216284067	216284067	C	T	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.1717	p.G573R	1.000	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	74	0	0	71	53	42.74	-	-	-	T	216284067	C	T	216284067	3	4	692	1	0	0	0	0	1	0	0	0	6008	603	21	4	5889	4	FN1	2	216284067	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	13873755	216284067	26915306	27	60563										
IRS1	0	genome.wustl.edu	37	chr2	227661256	227661256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcccccactggtgacatgttCatgtagtcacctgtgcaagg	10	12	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	2	227661256	227661256	C	T	SNP	IRS1	ENST00000305123	human	ensembl	69_37n	-1	known	missense	c.2199	p.M733I	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	27	0	0	23	11	32.35	-	-	-	T	227661256	C	T	227661256	3	4	692	1	0	0	0	0	1	0	0	0	7894	826	29	2	1533	2	IRS1	2	227661256	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	11377189	227661256	15538117	28	60564										
IQSEC1	0	genome.wustl.edu	37	chr3	12977058	12977058	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttgtggtaggtctgcttgctGagcgtctgctcccgcaggct	14	11	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	12977058	12977058	G	A	SNP	IQSEC1	ENST00000450726	human	ensembl	69_37n	-1	known	nonsense	c.1501	p.Q501*	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IQSEC1	HGNC	ENSG00000144711	43	0	0	46	38	44.71	-	-	-	A	12977058	G	A	12977058	4	1	692	1	0	0	0	0	0	1	0	0	7871	1277	45	2	1984	2	IQSEC1	3	12977058	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		12977058	185045372	29	60565										
AMIGO3	0	genome.wustl.edu	37	chr3	49755912	49755912	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctgccgtcggccagcaccgcGatgctgccatcgcgggatcc	13	17	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	49755912	49755912	G	A	SNP	AMIGO3	ENST00000320431	human	ensembl	69_37n	-1	known	silent	c.987	p.I329	0.003	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	AMIGO3	HGNC	ENSG00000176020	12	0	0	10	12	54.55	-	-	-	A	49755912	G	A	49755912	2	1	692	1	0	0	0	0	0	0	0	1	577	1048	37	1		1	AMIGO3	3	49755912	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	36778854	49755912	148266518	30	60566										
TBC1D23	0	genome.wustl.edu	37	chr3	99979901	99979901	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtgccgccgctgccaacgtcGagcggcgacggctggtgagt	17	13	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	99979901	99979901	G	C	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	silent	c.39	p.S13	0.022	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	17	0	0	22	9	29.03	-	-	-	C	99979901	G	C	99979901	2	2	692	1	0	0	0	0	0	0	0	1	15705	1045	37	3		3	TBC1D23	3	99979901	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	50223989	99979901	98042529	31	60567										
FAM162A	0	genome.wustl.edu	37	chr3	122121674	122121674	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cttaccagaagctctgatttGaagagaataaatggattttg	9	5	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	122121674	122121674	G	C	SNP	FAM162A	ENST00000477892	human	ensembl	69_37n	1	known	missense	c.102	p.L34F	0.074	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162A	HGNC	ENSG00000114023	81	0	0	77	52	40.31	-	-	-	C	122121674	G	C	122121674	3	2	692	1	0	0	0	0	1	0	0	0	5514	1281	45	2	108	2	FAM162A	3	122121674	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	22141773	122121674	75900756	32	60568										
SEMA5B	0	genome.wustl.edu	37	chr3	122667367	122667367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcttaccttcaaaggccacgGtggggtgcttgctaagggcg	14	10	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	122667367	122667367	G	T	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	missense	c.476	p.T159N	0.076	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	20	0	0	21	11	34.38	-	-	-	T	122667367	G	T	122667367	3	4	692	1	0	0	0	0	1	0	0	0	14126	1261	44	4	3225	4	SEMA5B	3	122667367	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	545693	122667367	75355063	33	60569										
IFT122	0	genome.wustl.edu	37	chr3	129183529	129183529	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gggatgttcaatgggatcatCagcatacggaacaaaaatgg	12	6	3	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	129183529	129183529	C	A	SNP	IFT122	ENST00000508826	human	ensembl	69_37n	1	putative	missense	c.322	p.Q108K	1.000	pfam_WD40_repeat	pfam_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IFT122	HGNC	ENSG00000163913	63	0	0	70	45	39.13	-	-	-	A	129183529	C	A	129183529	3	1	692	1	0	0	0	0	1	0	0	0	7609	816	29	2	651	2	IFT122	3	129183529	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	6516162	129183529	68838901	34	60570										
DBR1	0	genome.wustl.edu	37	chr3	137886069	137886069	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gaaaaaagatttagtcttaaGaagttgcttcttatttccat	6	5	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	137886069	137886069	G	C	SNP	DBR1	ENST00000260803	human	ensembl	69_37n	-1	known	missense	c.568	p.L190V	1.000	pfam_Metallo_PEstase_dom	pfam_DBR1_C,pfam_Metallo_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231	56	0	0	35	25	41.67	-	-	-	C	137886069	G	C	137886069	3	2	692	1	0	0	0	0	1	0	0	0	4289	942	33	2	1082	2	DBR1	3	137886069	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	8702540	137886069	60136361	35	60571										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	76	0	0	33	33	50	-	-	-	A	178936091	G	A	178936091	3	1	692	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	41050022	178936091	19086339	36	60572										
SLC34A2	0	genome.wustl.edu	37	chr4	25671395	25671395	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atagtggagagcttccacttCaagaatggagaagatgcccc	11	9	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	4	25671395	25671395	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	1	known	silent	c.762	p.F254	0.937	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	60	0	0	60	39	39.39	-	-	-	T	25671395	C	T	25671395	2	4	692	1	0	0	0	0	0	0	0	1	14657	825	29	2		2	SLC34A2	4	25671395	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		25671395	165482881	37	60573										
BANK1	0	genome.wustl.edu	37	chr4	102839158	102839158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttatgcttacagatactcatTtcaaagaacttccaactctt	3	10	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	4	102839158	102839158	T	G	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	missense	c.1018	p.F340V	0.002	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	68	0	0	49	46	48.42	-	-	-	G	102839158	T	G	102839158	3	3	692	1	0	0	0	0	1	0	0	0	1313	1841	64	5	1044	5	BANK1	4	102839158	Missense_Mutation	SNP	T	TCGA-D8-A1JN-01A-11D-A13L-09	77167763	102839158	88315118	38	60574										
ADAM29	0	genome.wustl.edu	37	chr4	175899085	175899085	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cctcctgtgacaccctcccaGaggcaacctcagttgatgcc	8	17	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	4	175899085	175899085	G	C	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.2409	p.Q803H	0.718	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	59	0	0	83	64	43.54	-	-	-	C	175899085	G	C	175899085	3	2	692	1	0	0	0	0	1	0	0	0	247	933	33	2	2411	2	ADAM29	4	175899085	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	73059927	175899085	15255191	39	60575										
LIFR	0	genome.wustl.edu	37	chr5	38490331	38490331	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatcatggagcgtaataattGatatccttgatttctgcatc	7	7	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	38490331	38490331	G	A	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	nonsense	c.2128	p.Q710*	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	111	0	0	75	45	37.19	-	-	-	A	38490331	G	A	38490331	4	1	692	1	0	0	0	0	0	1	0	0	8835	1299	45	2	1189	2	LIFR	5	38490331	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		38490331	142424929	40	60576										
MEF2C	0	genome.wustl.edu	37	chr5	88056820	88056820	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cttacaggaattttatgactCttgatcatattatcaaattc	4	7	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	88056820	88056820	C	T	SNP	MEF2C	ENST00000424173	human	ensembl	69_37n	-1	known	silent	c.381	p.K127	1.000	pfam_HJURP_C	pfam_HJURP_C,pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	112	0	0	115	55	32.35	-	-	-	T	88056820	C	T	88056820	2	4	692	1	0	0	0	0	0	0	0	1	9528	912	32	2		2	MEF2C	5	88056820	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	49566489	88056820	92858440	41	60577										
ARSK	0	genome.wustl.edu	37	chr5	94936613	94936613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctttgttgccgttatcatcaGaaacatttaagaatgaacat	6	7	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	94936613	94936613	G	C	SNP	ARSK	ENST00000380009	human	ensembl	69_37n	1	known	missense	c.1159	p.E387Q	0.951	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	73	0	0	104	51	32.9	-	-	-	C	94936613	G	C	94936613	3	2	692	1	0	0	0	0	1	0	0	0	1000	943	33	2	1185	2	ARSK	5	94936613	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6879793	94936613	85978647	42	60578										
PCSK1	0	genome.wustl.edu	37	chr5	95744025	95744025	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcattgtgcaggtcagcgctCgtctggatgacgtcaggaag	14	9	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	95744025	95744025	C	T	SNP	PCSK1	ENST00000311106	human	ensembl	69_37n	-1	known	silent	c.1098	p.T366	0.004	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426	44	0	0	46	30	39.47	-	-	-	T	95744025	C	T	95744025	2	4	692	1	0	0	0	0	0	0	0	1	11673	871	31	1		1	PCSK1	5	95744025	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	807412	95744025	85171235	43	60579										
CEP120	0	genome.wustl.edu	37	chr5	122714068	122714068	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aagctgctgctctcgcttctCcaagtcaattagagtttttt	7	10	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	122714068	122714068	C	A	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	nonsense	c.2158	p.E720*	1.000	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	87	0	0	77	54	41.22	-	-	-	A	122714068	C	A	122714068	4	1	692	1	0	0	0	0	0	1	0	0	3275	864	30	2	826	2	CEP120	5	122714068	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	26970043	122714068	58201192	44	60580										
PCDHGA2	0	genome.wustl.edu	37	chr5	140719585	140719585	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatgccccagaattttacatGacatctgctactagctcagt	6	11	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	140719585	140719585	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.1047	p.M349I	0.006	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	36	0	0	22	24	52.17	-	-	-	A	140719585	G	A	140719585	3	1	692	1	0	0	0	0	1	0	0	0	11627	1290	45	2	1049	2	PCDHGA2	5	140719585	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	18005517	140719585	40195675	45	60581										
ERGIC1	0	genome.wustl.edu	37	chr5	172324039	172324039	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tgcctcttcatcctcttcctCttcctctcggagctcaccgg	6	18	6	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	5	172324039	172324039	C	T	SNP	ERGIC1	ENST00000393784	human	ensembl	69_37n	1	known	silent	c.117	p.L39	1.000	NULL	pfam_DUF1692	-	no_errors	ERGIC1	HGNC	ENSG00000113719	151	1	0.66	181	158	46.61	-	-	-	T	172324039	C	T	172324039	2	4	692	1	0	0	0	0	0	0	0	1	5260	900	32	2		2	ERGIC1	5	172324039	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	31604454	172324039	8591221	46	60582										
DSP	0	genome.wustl.edu	37	chr6	7578090	7578090	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctatcaagaggaccatgattCagtccccttctggggtgatt	10	10	3	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	6	7578090	7578090	C	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	nonsense	c.2956	p.Q986*	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	43	0	0	43	27	38.57	-	-	-	T	7578090	C	T	7578090	4	4	692	1	0	0	0	0	0	1	0	0	4816	827	29	2	3038	2	DSP	6	7578090	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		7578090	163536977	47	60583										
RNF182	0	genome.wustl.edu	37	chr6	13977702	13977702	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cccccaagaggctggcctctCtggtcagtccttctcacacg	9	17	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	6	13977702	13977702	C	G	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.352	p.L118V	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	38	0	0	33	26	44.07	-	-	-	G	13977702	C	G	13977702	3	3	692	1	0	0	0	0	1	0	0	0	13552	912	32	2	354	2	RNF182	6	13977702	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	6399612	13977702	157137365	48	60584										
BRPF3	0	genome.wustl.edu	37	chr6	36181964	36181964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggtcgccgcacatcagtcctCttcaagaaggccaagaatgg	11	12	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	6	36181964	36181964	C	G	SNP	BRPF3	ENST00000441730	human	ensembl	69_37n	1	known	missense	c.421	p.L141V	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRPF3	HGNC	ENSG00000096070	19	0	0	22	15	40.54	-	-	-	G	36181964	C	G	36181964	3	3	692	1	0	0	0	0	1	0	0	0	1529	900	32	2	2816	2	BRPF3	6	36181964	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	22204262	36181964	134933103	49	60585										
PTK7	0	genome.wustl.edu	37	chr6	43112230	43112230	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agccctcagcagagatccaaGaagaagtggccttgaccagc	11	12	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	6	43112230	43112230	G	A	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	1	known	missense	c.2293	p.E765K	1.000	superfamily_Kinase-like_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	46	0	0	32	31	49.21	-	-	-	A	43112230	G	A	43112230	3	1	692	1	0	0	0	0	1	0	0	0	12846	943	33	2	2351	2	PTK7	6	43112230	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6930266	43112230	128002837	50	60586										
NUS1	0	genome.wustl.edu	37	chr6	117997186	117997186	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	acccagcttctcggacatcgCgagcctcgtggtgtggtgta	13	12	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	6	117997186	117997186	C	G	SNP	NUS1	ENST00000368494	human	ensembl	69_37n	1	known	missense	c.353	p.A118G	1.000	superfamily_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like	-	no_errors	NUS1	HGNC	ENSG00000153989	15	0	0	18	8	30.77	-	-	-	G	117997186	C	G	117997186	3	3	692	1	0	0	0	0	1	0	0	0	10850	768	27	3	355	3	NUS1	6	117997186	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	74884956	117997186	53117881	51	60587										
GRM3	0	genome.wustl.edu	37	chr7	86468257	86468257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	caatttccaaaatgtaggtgGaaagtattcctacttgaaag	8	6	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	86468257	86468257	G	T	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.1427	p.G476V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	29	0	0	20	30	60	-	-	-	T	86468257	G	T	86468257	3	4	692	1	0	0	0	0	1	0	0	0	6849	1174	41	2	1437	2	GRM3	7	86468257	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		86468257	72670406	52	60588										
PEX1	0	genome.wustl.edu	37	chr7	92120666	92120666	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtacatattgaattttgattCatctggaaggatctcggaca	9	6	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	92120666	92120666	C	A	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	nonsense	c.3358	p.E1120*	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	99	0	0	65	51	43.97	-	-	-	A	92120666	C	A	92120666	4	1	692	1	0	0	0	0	0	1	0	0	11809	835	29	2	509	2	PEX1	7	92120666	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	5652409	92120666	67017997	53	60589										
MEPCE	0	genome.wustl.edu	37	chr7	100030928	100030928	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accgaatccaattgaagccaGagcagttcagttcctacctg	8	12	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	100030928	100030928	G	C	SNP	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	missense	c.1933	p.E645Q	1.000	pfam_Bin3	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	36	0	0	36	22	37.93	-	-	-	C	100030928	G	C	100030928	3	2	692	1	0	0	0	0	1	0	0	0	9548	943	33	2	1943	2	MEPCE	7	100030928	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	7910262	100030928	59107735	54	60590										
POLR2J	0	genome.wustl.edu	37	chr7	102116688	102116688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tggtgaataaacaggcattgGgtaccttggtgtccttgtta	12	6	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	102116688	102116688	G	T	SNP	POLR2J	ENST00000393794	human	ensembl	69_37n	-1	known	missense	c.83	p.P28H	1.000	superfamily_DNA-dir_RNA_pol_RBP11-like	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	-	no_errors	POLR2J	HGNC	ENSG00000005075	64	0	0	36	112	75.68	-	-	-	T	102116688	G	T	102116688	3	4	692	1	0	0	0	0	1	0	0	0	12297	1232	43	4	282	4	POLR2J	7	102116688	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	2085760	102116688	57021975	55	60591										
SLC26A3	0	genome.wustl.edu	37	chr7	107408026	107408026	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cctgttgaagaatcttacctCatatacccgattacgtaatc	5	11	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	107408026	107408026	C	A	SNP	SLC26A3	ENST00000340010	human	ensembl	69_37n	-1	known	nonsense	c.2269	p.E757*	0.794	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138	111	0	0	84	49	36.84	-	-	-	A	107408026	C	A	107408026	4	1	692	1	0	0	0	0	0	1	0	0	14607	835	29	2	33	2	SLC26A3	7	107408026	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	5291338	107408026	51730637	56	60592										
RNF148	0	genome.wustl.edu	37	chr7	122342073	122342073	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aattcctcatccccttctttGagaactcgcagttgaagctg	7	12	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	122342073	122342073	G	A	SNP	RNF148	ENST00000434824	human	ensembl	69_37n	-1	known	silent	c.732	p.L244	0.951	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	94	0	0	82	47	36.43	-	-	-	A	122342073	G	A	122342073	2	1	692	1	0	0	0	0	0	0	0	1	13535	1277	45	2		2	RNF148	7	122342073	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	14934047	122342073	36796590	57	60593										
ZNF425	0	genome.wustl.edu	37	chr7	148823258	148823258	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cagggacccgagtttcgacaGagcctgcatcctccaccggc	11	16	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	148823258	148823258	G	A	SNP	ZNF425	ENST00000483014	human	ensembl	69_37n	-1	putative	silent	c.48	p.L16	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_stop_codon:bad_bp_length_for_coding_region	ZNF425	HGNC	ENSG00000204947	8	0	0	19	9	32.14	-	-	-	A	148823258	G	A	148823258	2	1	692	1	0	0	0	0	0	0	0	1	17995	957	33	2		2	ZNF425	7	148823258	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	26481185	148823258	10315405	58	60594										
SSPO	0	genome.wustl.edu	37	chr7	149514749	149514749	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctggctgctgcaggagctggGagccaccataggtgaccctg	15	12	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	149514749	149514749	G	A	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.536	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	17	0	0	9	15	62.5	-	-	-	A	149514749	G	A	149514749	1	1	692	0	1	0	0	0	0	0	0	0	15280	1174	41	2		2	SSPO	7	149514749	RNA	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	691491	149514749	9623914	59	60595										
FASTK	0	genome.wustl.edu	37	chr7	150774051	150774051	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tgccgctccctcagggccctCgagcccagcagcacccggcc	11	21	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	7	150774051	150774051	C	G	SNP	FASTK	ENST00000297532	human	ensembl	69_37n	-1	known	silent	c.1491	p.S497	0.008	pfam_RAP,smart_RAP	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896	11	0	0	12	14	51.85	-	-	-	G	150774051	C	G	150774051	2	3	692	1	0	0	0	0	0	0	0	1	5730	871	31	3		3	FASTK	7	150774051	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1259302	150774051	8364612	60	60596										
PRKDC	0	genome.wustl.edu	37	chr8	48694776	48694776	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtgttcaaaagaaggtccttCaaggtaacagtattttcaag	9	6	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	8	48694776	48694776	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	silent	c.11433	p.L3811	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	29	0	0	21	9	29.03	-	-	-	T	48694776	C	T	48694776	2	4	692	1	0	0	0	0	0	0	0	1	12602	825	29	2		2	PRKDC	8	48694776	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		48694776	97669246	61	60597										
PRDM14	0	genome.wustl.edu	37	chr8	70981503	70981503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cgaagtgcaggtcctcctccGtgaactggaaccgagcaggg	14	12	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	8	70981503	70981503	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	missense	c.593	p.T198M	1.000	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	44	0	0	38	33	46.48	-	-	-	A	70981503	G	A	70981503	3	1	692	1	0	0	0	0	1	0	0	0	12536	1145	40	1	1150	1	PRDM14	8	70981503	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	22286727	70981503	75382519	62	60598										
ADCY8	0	genome.wustl.edu	37	chr8	132051878	132051878	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tacgtgtgggaggtggtgtcCttcctgaccaccaccagggc	14	12	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	8	132051878	132051878	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	silent	c.702	p.K234	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	14	0	0	15	16	51.61	-	-	-	T	132051878	C	T	132051878	2	4	692	1	0	0	0	0	0	0	0	1	300	680	24	4		4	ADCY8	8	132051878	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	61070375	132051878	14312144	63	60599										
DNAJB5	0	genome.wustl.edu	37	chr9	34996744	34996744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcaccttccccaaagaaggcGacgccacacctgacaacatc	6	17	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	9	34996744	34996744	G	A	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	1	known	missense	c.910	p.D304N	0.998	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	18	0	0	18	18	50	-	-	-	A	34996744	G	A	34996744	3	1	692	1	0	0	0	0	1	0	0	0	4658	1058	37	1	920	1	DNAJB5	9	34996744	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		34996744	106216687	64	60600										
RGP1	0	genome.wustl.edu	37	chr9	35749395	35749395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gggtgccgatccctagtgtcGactatgcgaggtgactagcg	15	10	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	9	35749395	35749395	G	A	SNP	RGP1	ENST00000456972	human	ensembl	69_37n	1	known	missense	c.91	p.D31N	0.000	NULL	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185	38	0	0	58	37	38.95	-	-	-	A	35749395	G	A	35749395	3	1	692	1	0	0	0	0	1	0	0	0	13367	1058	37	1	97	1	RGP1	9	35749395	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	752651	35749395	105464036	65	60601										
NOL8	0	genome.wustl.edu	37	chr9	95086375	95086375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctgctgaactgattttgtagGtctgcctcagaaatgtcctg	10	9	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	9	95086375	95086375	G	T	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	missense	c.69	p.D23E	0.993	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	70	0	0	83	38	31.15	-	-	-	T	95086375	G	T	95086375	3	4	692	1	0	0	0	0	1	0	0	0	10599	1252	44	4	3498	4	NOL8	9	95086375	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	59336980	95086375	46127056	66	60602										
PDCL	0	genome.wustl.edu	37	chr9	125582781	125582781	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aacccttctccactggagatCtcaaaaacctgcttgaattg	6	12	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	9	125582781	125582781	C	T	SNP	PDCL	ENST00000259467	human	ensembl	69_37n	-1	known	silent	c.489	p.E163	0.994	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940	44	0	0	48	24	33.33	-	-	-	T	125582781	C	T	125582781	2	4	692	1	0	0	0	0	0	0	0	1	11699	912	32	2		2	PDCL	9	125582781	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	30496406	125582781	15630650	67	60603										
LRSAM1	0	genome.wustl.edu	37	chr9	130249962	130249962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtctttctggcagcatggccGaaatggatgaacgattccag	12	9	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	9	130249962	130249962	G	A	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	missense	c.1267	p.E423K	0.910	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	48	0	0	44	48	52.17	-	-	-	A	130249962	G	A	130249962	3	1	692	1	0	0	0	0	1	0	0	0	9109	1059	37	1	1329	1	LRSAM1	9	130249962	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	4667181	130249962	10963469	68	60604										
EGR2	0	genome.wustl.edu	37	chr10	64573125	64573125	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gggggcactgcttttccgctCtttctgtctcaggtggatct	12	11	4	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	10	64573125	64573125	C	T	SNP	EGR2	ENST00000242480	human	ensembl	69_37n	-1	known	missense	c.1273	p.E425K	1.000	pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877	77	0	0	100	61	37.89	-	-	-	T	64573125	C	T	64573125	3	4	692	1	0	0	0	0	1	0	0	0	5007	922	32	2	161	2	EGR2	10	64573125	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		64573125	70961622	69	60605										
NOC3L	0	genome.wustl.edu	37	chr10	96106314	96106314	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cataaaaatgtttttaacatCtaatattggaaaaaaaacac	3	5	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	10	96106314	96106314	C	A	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	splice_site	c.1258-1	e11-1	1.000	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145	111	0	0	106	62	36.9	-	-	-	A	96106314	C	A	96106314	5	1	692	1	0	0	0	0	0	0	1	0	10586	927	32	2	1189	2	NOC3L	10	96106314	Splice_Site	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	31533189	96106314	39428433	70	60606										
FAM175B	0	genome.wustl.edu	37	chr10	126523424	126523424	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	attcagacgacagtgattatGaaaatttgattgaccctaca	7	7	1	5			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	10	126523424	126523424	G	A	SNP	FAM175B	ENST00000298492	human	ensembl	69_37n	1	known	missense	c.1132	p.E378K	1.000	NULL	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660	30	0	0	24	12	33.33	-	-	-	A	126523424	G	A	126523424	3	1	692	1	0	0	0	0	1	0	0	0	5538	1291	45	2	1166	2	FAM175B	10	126523424	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	30417110	126523424	9011323	71	60607										
MUC2	0	genome.wustl.edu	37	chr11	1101059	1101059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gagggtggaagtggcatcatCtgccaacccaagaggtgcag	15	9	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	1101059	1101059	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	silent	c.7458	p.I2486	0.048	superfamily_Prot_inh_PMP,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	25	0	0	37	28	43.08	-	-	-	T	1101059	C	T	1101059	2	4	692	1	0	0	0	0	0	0	0	1	10047	903	32	2		2	MUC2	11	1101059	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		1101059	133905457	72	60608										
TPP1	0	genome.wustl.edu	37	chr11	6637688	6637688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggcagggctgactcattactGagcagcatgagccactgcag	13	11	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	6637688	6637688	G	A	SNP	TPP1	ENST00000436873	human	ensembl	69_37n	-1	putative	missense	c.497	p.S166L	1.000	NULL	pfam_Peptidase_S53_propep,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_stop_codon	TPP1	HGNC	ENSG00000166340	18	0	0	22	18	45	-	-	-	A	6637688	G	A	6637688	3	1	692	1	0	0	0	0	1	0	0	0	16507	1277	45	2	782	2	TPP1	11	6637688	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	5536629	6637688	128368828	73	60609										
SLC43A1	0	genome.wustl.edu	37	chr11	57263539	57263539	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcaggggcaggaaaggcttcGatgggccagttgagggtgca	18	7	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	57263539	57263539	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	69_37n	-1	known	silent	c.657	p.I219	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150	38	0	0	29	34	53.97	-	-	-	A	57263539	G	A	57263539	2	1	692	1	0	0	0	0	0	0	0	1	14721	1048	37	1		1	SLC43A1	11	57263539	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	50625851	57263539	77742977	74	60610										
OR5B12	0	genome.wustl.edu	37	chr11	58207576	58207576	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gatctgcagttctgggtcatCagttaaccccacaaggatga	10	10	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	58207576	58207576	C	T	SNP	OR5B12	ENST00000302572	human	ensembl	69_37n	-1	known	missense	c.49	p.D17N	0.007	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5B12	HGNC	ENSG00000172362	53	0	0	24	20	45.45	-	-	-	T	58207576	C	T	58207576	3	4	692	1	0	0	0	0	1	0	0	0	11221	826	29	2	899	2	OR5B12	11	58207576	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	944037	58207576	76798940	75	60611										
MPEG1	0	genome.wustl.edu	37	chr11	58980260	58980260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tttttgaactccaacttcgtCcatctctcccgaaggcttgc	6	14	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	58980260	58980260	C	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	missense	c.79	p.D27Y	0.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	44	0	0	29	20	40.82	-	-	-	A	58980260	C	A	58980260	3	1	692	1	0	0	0	0	1	0	0	0	9795	855	30	2	2075	2	MPEG1	11	58980260	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	772684	58980260	76026256	76	60612										
STX3	0	genome.wustl.edu	37	chr11	59559682	59559682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggcgaatccagcggcagctcGaaattagtatgtacttgagg	13	8	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	59559682	59559682	G	A	SNP	STX3	ENST00000337979	human	ensembl	69_37n	1	known	missense	c.460	p.E154K	1.000	superfamily_t-SNARE	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX3	HGNC	ENSG00000166900	40	0	0	28	31	52.54	-	-	-	A	59559682	G	A	59559682	3	1	692	1	0	0	0	0	1	0	0	0	15437	1059	37	1	482	1	STX3	11	59559682	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	579422	59559682	75446834	77	60613										
INCENP	0	genome.wustl.edu	37	chr11	61897585	61897585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ccgagcctctgccccgcactCtgtccccgactccagcttca	7	21	3	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	61897585	61897585	C	T	SNP	INCENP	ENST00000394818	human	ensembl	69_37n	1	known	silent	c.586	p.L196	0.001	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	19	0	0	14	13	48.15	-	-	-	T	61897585	C	T	61897585	2	4	692	1	0	0	0	0	0	0	0	1	7787	912	32	2		2	INCENP	11	61897585	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	2337903	61897585	73108931	78	60614										
INCENP	0	genome.wustl.edu	37	chr11	61897900	61897900	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cgggctctcgcacggactctCaatcggtgcggcacagcccg	13	16	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	61897900	61897900	C	G	SNP	INCENP	ENST00000394818	human	ensembl	69_37n	1	known	missense	c.901	p.Q301E	0.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	15	0	0	9	11	55	-	-	-	G	61897900	C	G	61897900	3	3	692	1	0	0	0	0	1	0	0	0	7787	827	29	2	911	2	INCENP	11	61897900	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	315	61897900	73108616	79	60615										
GANAB	0	genome.wustl.edu	37	chr11	62398569	62398569	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agcagcaggaagacgtcaatGatgccagtctctgacatcca	10	11	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	62398569	62398569	G	C	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.1149	p.I383M	0.999	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	62	0	0	68	38	35.85	-	-	-	C	62398569	G	C	62398569	3	2	692	1	0	0	0	0	1	0	0	0	6283	1280	45	2	1811	2	GANAB	11	62398569	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	500669	62398569	72607947	80	60616										
SLC22A25	0	genome.wustl.edu	37	chr11	62996883	62996883	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	acttctctggcctcagatttGagtcgaatgggatggagatt	12	7	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	62996883	62996883	G	C	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	nonsense	c.242	p.S81*	0.125	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	83	0	0	81	69	46	-	-	-	C	62996883	G	C	62996883	4	2	692	1	0	0	0	0	0	1	0	0	14543	1294	45	2	1437	2	SLC22A25	11	62996883	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	598314	62996883	72009633	81	60617										
SYTL2	0	genome.wustl.edu	37	chr11	85435306	85435306	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctctccaaagccaggttcctGaagagtcccttgtccccctg	8	16	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	85435306	85435306	G	A	SNP	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	nonsense	c.3766	p.Q1256*	0.002	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	80	0	0	43	41	48.24	-	-	-	A	85435306	G	A	85435306	4	1	692	1	0	0	0	0	0	1	0	0	15575	1299	45	2	1676	2	SYTL2	11	85435306	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	22438423	85435306	49571210	82	60618										
TMPRSS5	0	genome.wustl.edu	37	chr11	113563803	113563803	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agtgccgcacctgagaagttGagagcggtctggagcctcag	15	10	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	113563803	113563803	G	C	SNP	TMPRSS5	ENST00000299882	human	ensembl	69_37n	-1	known	silent	c.954	p.L318	0.996	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS5	HGNC	ENSG00000166682	10	0	0	20	8	28.57	-	-	-	C	113563803	G	C	113563803	2	2	692	1	0	0	0	0	0	0	0	1	16345	1277	45	2		2	TMPRSS5	11	113563803	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	28128497	113563803	21442713	83	60619										
APLP2	0	genome.wustl.edu	37	chr11	129993538	129993538	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	caggaggcgatgacggggccCtgccgggccgtgatgcctcg	18	13	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	11	129993538	129993538	C	T	SNP	APLP2	ENST00000263574	human	ensembl	69_37n	1	known	silent	c.954	p.P318	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	36	0	0	38	36	48.65	-	-	-	T	129993538	C	T	129993538	2	4	692	1	0	0	0	0	0	0	0	1	781	668	24	4		4	APLP2	11	129993538	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	16429735	129993538	5012978	84	60620										
CHD4	0	genome.wustl.edu	37	chr12	6701207	6701207	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttcaaaatttcgagtgaggaTgtacttgtagtatttcctac	8	6	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	6701207	6701207	T	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2965	p.I989F	1.000	pfam_SNF2_N	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	65	0	0	74	42	36.21	-	-	-	A	6701207	T	A	6701207	3	1	692	1	0	0	0	0	1	0	0	0	3356	1464	51	5	2857	5	CHD4	12	6701207	Missense_Mutation	SNP	T	TCGA-D8-A1JN-01A-11D-A13L-09		6701207	127150688	85	60621										
CHD4	0	genome.wustl.edu	37	chr12	6715439	6715439	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggcccttggggaagatgttaCctgggtggggtgggggcagg	22	6	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	6715439	6715439	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	splice_site	c.100+1	e1+1	1.000	-	-	-	no_errors	CHD4	HGNC	ENSG00000111642	13	0	0	17	10	37.04	-	-	-	T	6715439	C	T	6715439	5	4	692	1	0	0	0	0	0	0	1	0	3356	521	18	4	5793	4	CHD4	12	6715439	Splice_Site	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	14232	6715439	127136456	86	60622										
KRT73	0	genome.wustl.edu	37	chr12	53012235	53012235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aggaggatgagctgccccctGagagcacagcggagcagccg	16	12	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	53012235	53012235	G	A	SNP	KRT73	ENST00000305748	human	ensembl	69_37n	-1	known	missense	c.74	p.S25L	0.001	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	14	0	0	15	6	28.57	-	-	-	A	53012235	G	A	53012235	3	1	692	1	0	0	0	0	1	0	0	0	8539	1294	45	2	1584	2	KRT73	12	53012235	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	46296796	53012235	80839660	87	60623										
KRT73	0	genome.wustl.edu	37	chr12	53012283	53012283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cccccttggcagcagctcccGacttgtaggtgaattggcgg	13	13	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	53012283	53012283	G	A	SNP	KRT73	ENST00000305748	human	ensembl	69_37n	-1	known	missense	c.26	p.S9L	0.033	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	18	0	0	11	8	42.11	-	-	-	A	53012283	G	A	53012283	3	1	692	1	0	0	0	0	1	0	0	0	8539	1059	37	1	1632	1	KRT73	12	53012283	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	48	53012283	80839612	88	60624										
ESPL1	0	genome.wustl.edu	37	chr12	53680434	53680434	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aataaaaagtgtccctggctCagagccctctaagactcagg	9	11	3	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	53680434	53680434	C	G	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	nonsense	c.3914	p.S1305*	0.971	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	35	0	0	17	19	52.78	-	-	-	G	53680434	C	G	53680434	4	3	692	1	0	0	0	0	0	1	0	0	5290	838	29	2	3980	2	ESPL1	12	53680434	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	668151	53680434	80171461	89	60625										
SHMT2	0	genome.wustl.edu	37	chr12	57626352	57626352	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctcattgactacgcccgcatGagagaggttggtgggggggg	18	8	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	57626352	57626352	G	A	SNP	SHMT2	ENST00000328923	human	ensembl	69_37n	1	known	missense	c.711	p.M237I	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199	25	0	0	18	18	50	-	-	-	A	57626352	G	A	57626352	3	1	692	1	0	0	0	0	1	0	0	0	14375	1290	45	2	733	2	SHMT2	12	57626352	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	3945918	57626352	76225543	90	60626										
CPSF6	0	genome.wustl.edu	37	chr12	69656307	69656307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accgagaccgtgaccgagagCgtgaccgagagcgcgaatat	14	11	0	5			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	69656307	69656307	C	T	SNP	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	missense	c.1735	p.R579C	0.761	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	62	0	0	57	48	45.71	-	-	-	T	69656307	C	T	69656307	3	4	692	1	0	0	0	0	1	0	0	0	3859	768	27	1	1658	1	CPSF6	12	69656307	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	12029955	69656307	64195588	91	60627										
PTPRB	0	genome.wustl.edu	37	chr12	70989934	70989934	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gagattgaaaaaagtgtattCattccatgaagtactttctt	7	5	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	70989934	70989934	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385K	0.055	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	77	0	0	75	42	35.9	-	-	-	T	70989934	C	T	70989934	3	4	692	1	0	0	0	0	1	0	0	0	12879	835	29	2	5614	2	PTPRB	12	70989934	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1333627	70989934	62861961	92	60628										
TMCC3	0	genome.wustl.edu	37	chr12	94972209	94972209	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcgtaggcctggtaggccacCttctcctcaatgctggccag	11	14	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	94972209	94972209	C	G	SNP	TMCC3	ENST00000261226	human	ensembl	69_37n	-1	known	missense	c.1092	p.K364N	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	53	0	0	35	34	48.57	-	-	-	G	94972209	C	G	94972209	3	3	692	1	0	0	0	0	1	0	0	0	16089	680	24	4	349	4	TMCC3	12	94972209	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	23982275	94972209	38879686	93	60629										
KCTD10	0	genome.wustl.edu	37	chr12	109889615	109889615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatccgggcttcgggaaactCcacctgtgttcccacagtat	9	13	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	109889615	109889615	C	T	SNP	KCTD10	ENST00000228495	human	ensembl	69_37n	-1	known	missense	c.727	p.E243K	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	15	0	0	4	9	69.23	-	-	-	T	109889615	C	T	109889615	3	4	692	1	0	0	0	0	1	0	0	0	8151	864	30	2	218	2	KCTD10	12	109889615	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	14917406	109889615	23962280	94	60630										
DDX54	0	genome.wustl.edu	37	chr12	113599116	113599116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cacctcttcgctctgggcctCgccggtcagatgccccttct	9	18	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	113599116	113599116	C	T	SNP	DDX54	ENST00000314045	human	ensembl	69_37n	-1	known	missense	c.2372	p.R791Q	0.750	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064	52	0	0	90	79	46.75	-	-	-	T	113599116	C	T	113599116	3	4	692	1	0	0	0	0	1	0	0	0	4403	884	31	1	284	1	DDX54	12	113599116	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	3709501	113599116	20252779	95	60631										
RAB35	0	genome.wustl.edu	37	chr12	120541722	120541722	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atctccacggtccggatcttGaaatccactccgatcgtggt	9	13	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	12	120541722	120541722	G	C	SNP	RAB35	ENST00000229340	human	ensembl	69_37n	-1	known	missense	c.135	p.F45L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB35	HGNC	ENSG00000111737	43	0	0	41	38	47.5	-	-	-	C	120541722	G	C	120541722	3	2	692	1	0	0	0	0	1	0	0	0	13008	1281	45	2	486	2	RAB35	12	120541722	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6942606	120541722	13310173	96	60632										
PARP4	0	genome.wustl.edu	37	chr13	25049681	25049681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aaccaagttcccagaggcatCctggaggccggccttggtgc	13	13	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	25049681	25049681	C	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.1843	p.D615N	1.000	smart_VIT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	68	0	0	55	28	33.73	-	-	-	T	25049681	C	T	25049681	3	4	692	1	0	0	0	0	1	0	0	0	11536	855	30	2	3411	2	PARP4	13	25049681	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		25049681	90120197	97	60633										
CDK8	0	genome.wustl.edu	37	chr13	26967647	26967647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atgtaatgggatttcctgcaGgtacacattattcgtttttg	9	6	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	26967647	26967647	G	A	SNP	CDK8	ENST00000381527	human	ensembl	69_37n	1	known	missense	c.790	p.D264N	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK8	HGNC	ENSG00000132964	75	0	0	44	46	51.11	-	-	-	A	26967647	G	A	26967647	3	1	692	1	0	0	0	0	1	0	0	0	3179	1014	35	4	816	4	CDK8	13	26967647	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	1917966	26967647	88202231	98	60634										
MTUS2	0	genome.wustl.edu	37	chr13	29599120	29599120	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	caggctggctctgccagcctGaaagattttagactttcttc	9	11	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	29599120	29599120	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.315	p.L105	0.005	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	32	0	0	15	18	54.55	-	-	-	A	29599120	G	A	29599120	2	1	692	1	0	0	0	0	0	0	0	1	10038	1277	45	2		2	MTUS2	13	29599120	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	2631473	29599120	85570758	99	60635										
SLC7A1	0	genome.wustl.edu	37	chr13	30091323	30091323	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctctcgggctgcctccagatGacgcccgtgaccacggcaca	11	17	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	30091323	30091323	G	A	SNP	SLC7A1	ENST00000380752	human	ensembl	69_37n	-1	known	silent	c.1635	p.V545	1.000	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514	11	0	0	21	10	32.26	-	-	-	A	30091323	G	A	30091323	2	1	692	1	0	0	0	0	0	0	0	1	14781	1277	45	2		2	SLC7A1	13	30091323	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	492203	30091323	85078555	100	60636										
SPG20	0	genome.wustl.edu	37	chr13	36886556	36886556	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	acaagtttgcttccatgcttCttgacatgtggagctagttc	9	9	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	36886556	36886556	C	T	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	silent	c.1542	p.K514	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	83	0	0	56	51	47.66	-	-	-	T	36886556	C	T	36886556	2	4	692	1	0	0	0	0	0	0	0	1	15133	912	32	2		2	SPG20	13	36886556	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	6795233	36886556	78283322	101	60637										
FREM2	0	genome.wustl.edu	37	chr13	39438637	39438637	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aggttccactaccttgcgctTctaccggaacctgaacctag	8	14	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	39438637	39438637	T	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.7877	p.F2626Y	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	68	0	0	79	9	10.23	-	-	-	A	39438637	T	A	39438637	3	1	692	1	0	0	0	0	1	0	0	0	6094	1783	62	5	7939	5	FREM2	13	39438637	Missense_Mutation	SNP	T	TCGA-D8-A1JN-01A-11D-A13L-09	2552081	39438637	75731241	102	60638										
SLC15A1	0	genome.wustl.edu	37	chr13	99338507	99338507	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atgttgccaacagccacggtCagcagccatcctgcctgaag	10	14	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	99338507	99338507	C	T	SNP	SLC15A1	ENST00000376503	human	ensembl	69_37n	-1	known	silent	c.1872	p.L624	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	48	0	0	47	47	50	-	-	-	T	99338507	C	T	99338507	2	4	692	1	0	0	0	0	0	0	0	1	14487	813	29	2		2	SLC15A1	13	99338507	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	59899870	99338507	15831371	103	60639										
DOCK9	0	genome.wustl.edu	37	chr13	99460049	99460049	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atactcctttccatcttcatCttcaaagaatccctgtgaca	3	13	4	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	99460049	99460049	C	G	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.5383	p.D1795H	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	121	0	0	128	104	44.83	-	-	-	G	99460049	C	G	99460049	3	3	692	1	0	0	0	0	1	0	0	0	4729	913	32	2	812	2	DOCK9	13	99460049	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	121542	99460049	15709829	104	60640										
ING1	0	genome.wustl.edu	37	chr13	111371874	111371874	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gcagcgcaggctgacaagccCaacagcaagcgctcacggcg	13	15	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	13	111371874	111371874	C	T	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	silent	c.864	p.P288	0.057	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	11	0	0	10	16	61.54	-	-	-	T	111371874	C	T	111371874	2	4	692	1	0	0	0	0	0	0	0	1	7789	581	21	4		4	ING1	13	111371874	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	11911825	111371874	3798004	105	60641										
FOXA1	0	genome.wustl.edu	37	chr14	38061347	38061347	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gagtggcggatggagttctgCcagcgctgctggttctgccg	17	10	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	14	38061347	38061347	C	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.642	p.W214C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	23	0	0	22	17	43.59	-	-	-	A	38061347	C	A	38061347	3	1	692	1	0	0	0	0	1	0	0	0	6035	740	26	4	780	4	FOXA1	14	38061347	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		38061347	69288193	106	60642										
FSCB	0	genome.wustl.edu	37	chr14	44975125	44975125	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctcttctgaaggggactcttCagctgatggaggcagaattt	12	8	4	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	14	44975125	44975125	C	T	SNP	FSCB	ENST00000340446	human	ensembl	69_37n	-1	known	missense	c.1066	p.E356K	0.007	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	69	0	0	55	28	33.73	-	-	-	T	44975125	C	T	44975125	3	4	692	1	0	0	0	0	1	0	0	0	6115	835	29	2	1415	2	FSCB	14	44975125	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	6913778	44975125	62374415	107	60643										
MDGA2	0	genome.wustl.edu	37	chr14	47389259	47389259	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aacaatccgatccactgcatCaggattcatctgtgtccact	6	13	3	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	14	47389259	47389259	C	A	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.2194	p.D732Y	0.999	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	72	0	0	94	67	41.61	-	-	-	A	47389259	C	A	47389259	3	1	692	1	0	0	0	0	1	0	0	0	9478	826	29	2	915	2	MDGA2	14	47389259	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	2414134	47389259	59960281	108	60644										
CDKL1	0	genome.wustl.edu	37	chr14	50862466	50862466	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aattttctttatgacagggtCatcttctgattccagaaact	6	8	4	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	14	50862466	50862466	C	T	SNP	CDKL1	ENST00000395834	human	ensembl	69_37n	-1	known	missense	c.124	p.D42N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL1	HGNC	ENSG00000100490	82	0	0	62	45	42.06	-	-	-	T	50862466	C	T	50862466	3	4	692	1	0	0	0	0	1	0	0	0	3182	826	29	2	988	2	CDKL1	14	50862466	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	3473207	50862466	56487074	109	60645										
ZFP106	0	genome.wustl.edu	37	chr15	42743279	42743279	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcaaagagaggtttctctatCatttctgacttgttaccagt	7	8	4	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	42743279	42743279	C	G	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.1122	p.M374I	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	132	0	0	95	59	38.31	-	-	-	G	42743279	C	G	42743279	3	3	692	1	0	0	0	0	1	0	0	0	17733	826	29	2	4601	2	ZFP106	15	42743279	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		42743279	59788113	110	60646										
DUOX2	0	genome.wustl.edu	37	chr15	45398520	45398520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctccttggggcctggccactCcatcgctggggaagggataa	14	12	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	45398520	45398520	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.1951	p.E651K	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	37	0	0	30	29	48.33	-	-	-	T	45398520	C	T	45398520	3	4	692	1	0	0	0	0	1	0	0	0	4836	864	30	2	2767	2	DUOX2	15	45398520	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	2655241	45398520	57132872	111	60647										
RPS27L	0	genome.wustl.edu	37	chr15	63447802	63447802	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatctcatcactgggttggaGaatgccaaatgatatacctt	8	8	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	63447802	63447802	G	A	SNP	RPS27L	ENST00000439025	human	ensembl	69_37n	-1	putative	missense	c.244	p.L82F	0.072	superfamily_Ribosomal_zn-bd_dom	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom	-	no_errors	RPS27L	HGNC	ENSG00000185088	49	0	0	56	40	41.67	-	-	-	A	63447802	G	A	63447802	3	1	692	1	0	0	0	0	1	0	0	0	13726	957	33	2		2	RPS27L	15	63447802	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	18049282	63447802	39083590	112	60648										
HERC1	0	genome.wustl.edu	37	chr15	64010840	64010840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tgcaagcaagtaaacgacttCgaactttgtatacacaacgg	8	9	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	64010840	64010840	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3911	p.R1304Q	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	109	0	0	89	60	39.74	-	-	-	T	64010840	C	T	64010840	3	4	692	1	0	0	0	0	1	0	0	0	7108	884	31	1	10906	1	HERC1	15	64010840	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	563038	64010840	38520552	113	60649										
SLC24A1	0	genome.wustl.edu	37	chr15	65946274	65946274	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttttgctttttctcatgcttCtgtttgtgatctcttcaatt	5	8	4	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	65946274	65946274	C	T	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	silent	c.3157	p.L1053	1.000	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	193	0	0	219	180	45	-	-	-	T	65946274	C	T	65946274	2	4	692	1	0	0	0	0	0	0	0	1	14554	912	32	2		2	SLC24A1	15	65946274	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1935434	65946274	36585118	114	60650										
PARP6	0	genome.wustl.edu	37	chr15	72552860	72552860	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gggagggaggcccacgtgctGagggcacaggagacctgcct	18	11	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	15	72552860	72552860	G	A	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	nonsense	c.715	p.Q239*	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	16	0	0	10	12	54.55	-	-	-	A	72552860	G	A	72552860	4	1	692	1	0	0	0	0	0	1	0	0	11537	1299	45	2	1237	2	PARP6	15	72552860	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6606586	72552860	29978532	115	60651										
ADCY9	0	genome.wustl.edu	37	chr16	4015811	4015811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aacgttgagcttggtgagttCgttggcttcttctattcctg	11	8	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	4015811	4015811	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.4027	p.E1343K	0.949	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	113	0	0	122	82	40.2	-	-	-	T	4015811	C	T	4015811	3	4	692	1	0	0	0	0	1	0	0	0	301	893	31	1	38	1	ADCY9	16	4015811	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		4015811	86338942	116	60652										
USP7	0	genome.wustl.edu	37	chr16	8988916	8988916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcctcagcaaaaacgggattCcgaacgttccgaagacctct	8	13	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	8988916	8988916	C	T	SNP	USP7	ENST00000344836	human	ensembl	69_37n	-1	known	missense	c.3011	p.G1004E	1.000	NULL	pfam_Peptidase_C19,pfam_MATH,pfam_Pept_C19_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19	-	no_errors	USP7	HGNC	ENSG00000187555	53	0	0	48	37	43.53	-	-	-	T	8988916	C	T	8988916	3	4	692	1	0	0	0	0	1	0	0	0	17185	855	30	2	313	2	USP7	16	8988916	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	4973105	8988916	81365837	117	60653										
TMC5	0	genome.wustl.edu	37	chr16	19477531	19477531	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatcggagcatgcttgaccaCctgcttcttcagtttgctgt	9	11	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	19477531	19477531	C	G	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	1	known	missense	c.1613	p.T538S	0.745	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	101	0	0	111	74	40	-	-	-	G	19477531	C	G	19477531	3	3	692	1	0	0	0	0	1	0	0	0	16083	507	18	4	1953	4	TMC5	16	19477531	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	10488615	19477531	70877222	118	60654										
PRKCB	0	genome.wustl.edu	37	chr16	24166032	24166032	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tttcagaacgaaaaggcacaGatgagctctatgctgtgaag	11	7	2	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	24166032	24166032	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.1093	p.D365N	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	60	0	0	56	58	50.88	-	-	-	A	24166032	G	A	24166032	3	1	692	1	0	0	0	0	1	0	0	0	12589	942	33	2	1131	2	PRKCB	16	24166032	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	4688501	24166032	66188721	119	60655										
ZNF629	0	genome.wustl.edu	37	chr16	30795272	30795272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gctcgttggcggggacgactGgggggctgttccatgtggtg	20	8	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	30795272	30795272	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	missense	c.377	p.P126L	0.662	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	12	0	0	5	8	61.54	-	-	-	A	30795272	G	A	30795272	3	1	692	1	0	0	0	0	1	0	0	0	18149	1348	47	4	2236	4	ZNF629	16	30795272	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	6629240	30795272	59559481	120	60656										
ITGAD	0	genome.wustl.edu	37	chr16	31408729	31408729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tggcggccaaccagacgggaCggctgtatgactgcgcagct	15	12	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	31408729	31408729	C	T	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	1	known	missense	c.187	p.R63W	0.054	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886	8	0	0	10	10	50	-	-	-	T	31408729	C	T	31408729	3	4	692	1	0	0	0	0	1	0	0	0	7938	527	19	1	197	1	ITGAD	16	31408729	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	613457	31408729	58946024	121	60657										
TAT	0	genome.wustl.edu	37	chr16	71602632	71602632	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accgttgctgggaggcagtgGacagactgctcagcaactaa	13	10	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	71602632	71602632	G	A	SNP	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	silent	c.1206	p.V402	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	41	0	0	5	21	80.77	-	-	-	A	71602632	G	A	71602632	2	1	692	1	0	0	0	0	0	0	0	1	15682	1161	41	2		2	TAT	16	71602632	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	40193903	71602632	18752121	122	60658										
ANKRD11	0	genome.wustl.edu	37	chr16	89341577	89341577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	acagctccttcaggggctccGccagggagggagggggtgcg	19	11	1	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	89341577	89341577	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.7493	p.A2498V	0.993	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	19	0	0	4	18	78.26	-	-	-	A	89341577	G	A	89341577	3	1	692	1	0	0	0	0	1	0	0	0	639	1087	38	1	514	1	ANKRD11	16	89341577	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	17738945	89341577	1013176	123	60659										
NF1	0	genome.wustl.edu	37	chr17	29527590	29527590	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctgtcattttcctacttgttCagtccatggtggttgatctt	8	9	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	17	29527590	29527590	C	T	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.1039	p.Q347*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	70	0	0	9	52	85.25	-	-	-	T	29527590	C	T	29527590	4	4	692	1	0	0	0	0	0	1	0	0	10428	827	29	2	1073	2	NF1	17	29527590	Nonsense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09		29527590	51667620	124	60660										
EFCAB3	0	genome.wustl.edu	37	chr17	60447652	60447652	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gagctcacagaagaagaaatGaaggagttgatgcctcattt	11	6	2	5			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	17	60447652	60447652	G	T	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.642	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	111	0	0	30	74	71.15	-	-	-	T	60447652	G	T	60447652	3	4	692	1	0	0	0	0	1	0	0	0	4970	1290	45	2	5	2	EFCAB3	17	60447652	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	30920062	60447652	20747558	125	60661										
ANKRD24	0	genome.wustl.edu	37	chr19	4224161	4224164	+	Frame_Shift_Del	DEL	ACAG	ACAG	-													0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ctccagcgtggtggctttgtAcagaagccacctcctatatg							TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	4224161	4224164	ACAG	-	DEL	ANKRD24	ENST00000262970	human	ensembl	69_37n	1	known	frame_shift_del	c.3605_3608	p.Y1202fs	0.985:0.555:0.566:0.613	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	20	0	0	37	12	24	-	-	-	-	4224164	ACAG	-	4224161	7	5	692	1	0	1	0	1	0	0	0	0	653	391	14	0	3413	0	ANKRD24	19	4224161	Frame_Shift_Del	DEL	ACAG	TCGA-D8-A1JN-01A-11D-A13L-09		4224161	54904822	126	60662										
INSR	0	genome.wustl.edu	37	chr19	7166387	7166387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggaaccacacgcatcctgccCgtcgaactccgtcacattct	7	17	2	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	7166387	7166387	C	T	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.1639	p.G547R	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	37	0	0	28	26	48.15	-	-	-	T	7166387	C	T	7166387	3	4	692	1	0	0	0	0	1	0	0	0	7827	652	23	1	2569	1	INSR	19	7166387	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	2942226	7166387	51962596	127	60663										
EVI5L	0	genome.wustl.edu	37	chr19	7917980	7917980	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtgtccccacagtacttccaGagagtgatcccccaccagtt	8	15	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	7917980	7917980	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	69_37n	1	known	silent	c.996	p.Q332	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459	29	0	0	22	14	38.89	-	-	-	A	7917980	G	A	7917980	2	1	692	1	0	0	0	0	0	0	0	1	5327	933	33	2		2	EVI5L	19	7917980	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	751593	7917980	51211003	128	60664										
MUC16	0	genome.wustl.edu	37	chr19	9086981	9086981	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aatctctctggacagtgtgtCtgtagatggtttccaaaaag	10	7	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	9086981	9086981	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4834	p.D1612N	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	145	0	0	102	81	44.02	-	-	-	T	9086981	C	T	9086981	3	4	692	1	0	0	0	0	1	0	0	0	10045	913	32	2	39025	2	MUC16	19	9086981	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1169001	9086981	50042002	129	60665										
OR7D4	0	genome.wustl.edu	37	chr19	9325094	9325094	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gccagaaccaggaggccacaGaggcaggggttcatgatgac	15	10	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	9325094	9325094	G	T	SNP	OR7D4	ENST00000308682	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	0.419	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	63	0	0	63	35	35.71	-	-	-	T	9325094	G	T	9325094	2	4	692	1	0	0	0	0	0	0	0	1	11293	929	33	2		2	OR7D4	19	9325094	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	238113	9325094	49803889	130	60666										
ZNF266	0	genome.wustl.edu	37	chr19	9524224	9524224	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cacgtgaatggttttttggcGctgtgggtccgcatgtgatt	14	7	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	9524224	9524224	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	69_37n	-1	known	silent	c.1377	p.S459	0.501	smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652	39	0	0	32	25	43.86	-	-	-	A	9524224	G	A	9524224	2	1	692	1	0	0	0	0	0	0	0	1	17901	1078	38	1		1	ZNF266	19	9524224	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	199130	9524224	49604759	131	60667										
ZNF121	0	genome.wustl.edu	37	chr19	9677557	9677557	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tcctatccacgttctctggtGaacatttggtggcaggctga	11	10	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	9677557	9677557	G	A	SNP	ZNF121	ENST00000320451	human	ensembl	69_37n	-1	known	missense	c.232	p.H78Y	0.011	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961	72	0	0	72	53	42.06	-	-	-	A	9677557	G	A	9677557	3	1	692	1	0	0	0	0	1	0	0	0	17815	1290	45	2	944	2	ZNF121	19	9677557	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	153333	9677557	49451426	132	60668										
EMR3	0	genome.wustl.edu	37	chr19	14749063	14749063	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	actgtcaggttccgtgcagtGaggaagaggtgcacaccctc	13	11	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	14749063	14749063	G	C	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	silent	c.1338	p.L446	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	43	0	0	31	28	47.46	-	-	-	C	14749063	G	C	14749063	2	2	692	1	0	0	0	0	0	0	0	1	5143	1277	45	2		2	EMR3	19	14749063	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	5071506	14749063	44379920	133	60669										
CPAMD8	0	genome.wustl.edu	37	chr19	17015307	17015307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accctgtcactgaagctcaaGaatgtgcccttgtccacgtc	8	14	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	17015307	17015307	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.4256	p.S1419F	0.999	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	37	0	0	37	18	32.73	-	-	-	A	17015307	G	A	17015307	3	1	692	1	0	0	0	0	1	0	0	0	3825	933	33	2	1622	2	CPAMD8	19	17015307	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	2266244	17015307	42113676	134	60670										
ZNF681	0	genome.wustl.edu	37	chr19	23928047	23928047	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	catgttcacattttccatatCttcttggtgtcactttttgg	6	9	4	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	23928047	23928047	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	missense	c.305	p.R102K	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	57	0	0	70	49	41.18	-	-	-	T	23928047	C	T	23928047	3	4	692	1	0	0	0	0	1	0	0	0	18184	913	32	2	1636	2	ZNF681	19	23928047	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	6912740	23928047	35200936	135	60671										
ACTN4	0	genome.wustl.edu	37	chr19	39207792	39207792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tgccccaaaagactatccagGagatgcagcagaagctggag	12	10	0	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	39207792	39207792	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	missense	c.979	p.E327K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	22	0	0	43	31	41.89	-	-	-	A	39207792	G	A	39207792	3	1	692	1	0	0	0	0	1	0	0	0	207	1175	41	2	1017	2	ACTN4	19	39207792	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	15279745	39207792	19921191	136	60672										
ZNF780B	0	genome.wustl.edu	37	chr19	40540443	40540443	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atagggtttctcaccagtatGaatactctgaggttgaacaa	9	7	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	40540443	40540443	G	A	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	missense	c.2323	p.H775Y	0.907	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	65	0	0	49	56	53.33	-	-	-	A	40540443	G	A	40540443	3	1	692	1	0	0	0	0	1	0	0	0	18246	1290	45	2	182	2	ZNF780B	19	40540443	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	1332651	40540443	18588540	137	60673										
B3GNT8	0	genome.wustl.edu	37	chr19	41931969	41931969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agctcgcaagacaaaactcaCggtggggcagtggcggccca	14	12	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	41931969	41931969	C	T	SNP	B3GNT8	ENST00000321702	human	ensembl	69_37n	-1	known	missense	c.715	p.V239M	0.987	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT8	HGNC	ENSG00000177191	9	0	0	4	17	80.95	-	-	-	T	41931969	C	T	41931969	3	4	692	1	0	0	0	0	1	0	0	0	1267	536	19	1	482	1	B3GNT8	19	41931969	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1391526	41931969	17197014	138	60674										
ARHGAP35	0	genome.wustl.edu	37	chr19	47425022	47425022	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttcattatgagcaattttgaGagtaaactgaacaacaaagt	7	5	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	47425022	47425022	G	C	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	missense	c.3090	p.E1030D	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	16	0	0	18	8	30.77	-	-	-	C	47425022	G	C	47425022	3	2	692	1	0	0	0	0	1	0	0	0	6846	933	33	2	3092	2	ARHGAP35	19	47425022	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	5493053	47425022	11703961	139	60675										
ZNF114	0	genome.wustl.edu	37	chr19	48789311	48789311	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggcttgtgccttcacagggaGattccataagacaatgtatc	10	9	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	48789311	48789311	G	C	SNP	ZNF114	ENST00000315849	human	ensembl	69_37n	1	known	missense	c.430	p.D144H	0.003	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	31	0	0	25	15	37.5	-	-	-	C	48789311	G	C	48789311	3	2	692	1	0	0	0	0	1	0	0	0	17812	942	33	2	440	2	ZNF114	19	48789311	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	1364289	48789311	10339672	140	60676										
PPFIA3	0	genome.wustl.edu	37	chr19	49637900	49637900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	acctctgtctccacagaactCcctgagcgaggagatagcca	9	14	2	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	49637900	49637900	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	missense	c.1382	p.S461F	0.991	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	30	0	0	36	24	40	-	-	-	T	49637900	C	T	49637900	3	4	692	1	0	0	0	0	1	0	0	0	12384	855	30	2	1424	2	PPFIA3	19	49637900	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	848589	49637900	9491083	141	60677										
CCDC155	0	genome.wustl.edu	37	chr19	49912287	49912287	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agacctatgaggggcccgatGagtgagtggaatttcaaggg	16	6	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	49912287	49912287	G	A	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.1057	p.E353K	0.914	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	54	0	0	54	41	43.16	-	-	-	A	49912287	G	A	49912287	3	1	692	1	0	0	0	0	1	0	0	0	2814	1304	45	2	1103	2	CCDC155	19	49912287	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	274387	49912287	9216696	142	60678										
IRF3	0	genome.wustl.edu	37	chr19	50164064	50164064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	agcgtggtgagcgtccgcttCcttccgtgaaggtaatcaga	13	10	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	19	50164064	50164064	C	T	SNP	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	missense	c.1004	p.G335E	0.916	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	21	0	0	9	12	57.14	-	-	-	T	50164064	C	T	50164064	3	4	692	1	0	0	0	0	1	0	0	0	7885	855	30	2	287	2	IRF3	19	50164064	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	251777	50164064	8964919	143	60679										
E2F1	0	genome.wustl.edu	37	chr20	32267771	32267772	+	Frame_Shift_Ins	INS	-	-	A													0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gcgtgacttctcccccggggINSatttcacacctgtgggggtg							TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	20	32267771	32267772	-	A	INS	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	frame_shift_ins	c.362_361	p.S121fs	1.000:1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	30	0	0	37	18	32.73	-	-	-	A	32267772	-	A	32267771	7	5	692	1	0	1	1	0	0	0	0	0	4901	1174	41	0	971	0	E2F1	20	32267771	Frame_Shift_Ins	INS	-	TCGA-D8-A1JN-01A-11D-A13L-09		32267771	30757749	144	60680	449	2								
E2F1	0	genome.wustl.edu	37	chr20	32267776	32267776	+	Silent	SNP	C	C	A													0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gacttctcccccggggatttCacacctgtgggggtgtggtc							TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	20	32267776	32267776	C	A	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	silent	c.357	p.V119	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	28	0	0	30	18	35.29	-	-	-	A	32267776	C	A	32267776	2	1	692	1	0	0	0	0	0	0	0	1	4901	813	29	2		2	E2F1	20	32267776	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	5	32267776	30757744	145	60681	449	2								
CDH26	0	genome.wustl.edu	37	chr20	58560082	58560082	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cctcagtttacactgctaatCagagccagggactgtggaga	11	10	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	20	58560082	58560082	C	T	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.735	p.I245	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	42	0	0	45	52	53.61	-	-	-	T	58560082	C	T	58560082	2	4	692	1	0	0	0	0	0	0	0	1	3139	816	29	2		2	CDH26	20	58560082	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	26292306	58560082	4465438	146	60682										
C20orf20	0	genome.wustl.edu	37	chr20	61430926	61430926	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aagcggaagcgcagccgggtCaccgacaaagtcctgaccgc	13	14	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	20	61430926	61430926	C	T	SNP	C20orf20	ENST00000370487	human	ensembl	69_37n	1	known	silent	c.546	p.V182	1.000	NULL	pfam_EAF7	-	no_errors	C20orf20	HGNC	ENSG00000101189	28	0	0	35	23	39.66	-	-	-	T	61430926	C	T	61430926	2	4	692	1	0	0	0	0	0	0	0	1	2123	813	29	2		2	C20orf20	20	61430926	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	2870844	61430926	1594594	147	60683										
MX2	0	genome.wustl.edu	37	chr21	42754408	42754408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gcctggagatcacctcccctGaggttccagacctgaccatc	9	16	1	4			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	21	42754408	42754408	G	A	SNP	MX2	ENST00000330714	human	ensembl	69_37n	1	known	missense	c.649	p.E217K	0.099	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX2	HGNC	ENSG00000183486	32	0	0	23	19	45.24	-	-	-	A	42754408	G	A	42754408	3	1	692	1	0	0	0	0	1	0	0	0	10070	1291	45	2	663	2	MX2	21	42754408	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		42754408	5375487	148	60684										
KRTAP10-1	0	genome.wustl.edu	37	chr21	45959542	45959542	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ggatggcagctagactgctgGcagcatgaagaggaatcctc	14	9	0	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	21	45959542	45959542	G	C	SNP	KRTAP10-1	ENST00000400375	human	ensembl	69_37n	-1	known	missense	c.492	p.C164W	1.000	NULL	NULL	-	no_errors	KRTAP10-1	HGNC	ENSG00000215455	78	0	0	99	67	40.36	-	-	-	C	45959542	G	C	45959542	3	2	692	1	0	0	0	0	1	0	0	0	8558	1195	42	4	360	4	KRTAP10-1	21	45959542	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	3205134	45959542	2170353	149	60685										
LZTR1	0	genome.wustl.edu	37	chr22	21345981	21345981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cacccccgcagcggcgctacGggcataccatggtggccttt	12	16	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	22	21345981	21345981	G	A	SNP	LZTR1	ENST00000215739	human	ensembl	69_37n	1	known	missense	c.856	p.G286R	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	19	0	0	6	6	50	-	-	-	A	21345981	G	A	21345981	3	1	692	1	0	0	0	0	1	0	0	0	9204	1116	39	1	890	1	LZTR1	22	21345981	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		21345981	29958585	150	60686										
SMTN	0	genome.wustl.edu	37	chr22	31485771	31485771	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	accagccaggatgtgaccacAgtgacactcctgctgcgagc	11	14	0	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	22	31485771	31485771	A	G	SNP	SMTN	ENST00000347557	human	ensembl	69_37n	1	known	silent	c.558	p.T186	1.000	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	8	0	0	3	9	75	-	-	-	G	31485771	A	G	31485771	2	3	692	1	0	0	0	0	0	0	0	1	14903	175	7	5		5	SMTN	22	31485771	Silent	SNP	A	TCGA-D8-A1JN-01A-11D-A13L-09	10139790	31485771	19818795	151	60687										
CACNA1I	0	genome.wustl.edu	37	chr22	40055477	40055477	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tttggctgcaagttcagcctCcgcacggacactggagacac	11	13	1	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	22	40055477	40055477	C	T	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	1	known	silent	c.2388	p.L796	0.972	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	49	0	0	18	49	73.13	-	-	-	T	40055477	C	T	40055477	2	4	692	1	0	0	0	0	0	0	0	1	2571	842	30	2		2	CACNA1I	22	40055477	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	8569706	40055477	11249089	152	60688										
MOV10L1	0	genome.wustl.edu	37	chr22	50591632	50591632	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	aagaaaggcttccctctcatCttccatggtgtgcgggtgag	12	10	2	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	22	50591632	50591632	C	A	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	silent	c.3051	p.I1017	0.998	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	98	0	0	25	68	73.12	-	-	-	A	50591632	C	A	50591632	2	1	692	1	0	0	0	0	0	0	0	1	9791	903	32	2		2	MOV10L1	22	50591632	Silent	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	10536155	50591632	712934	153	60689										
ZNF673	0	genome.wustl.edu	37	chrX	46322764	46322764	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gtgagtcaggccggggaaagGagaccaggttggttggtgag	20	5	1	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	46322764	46322764	G	T	SNP	ZNF673	ENST00000476762	human	ensembl	69_37n	1	putative	nonsense	c.274	p.E92*	0.001	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_stop_codon:bad_bp_length_for_coding_region	ZNF673	HGNC	ENSG00000147121	29	0	0	55	45	45	-	-	-	T	46322764	G	T	46322764	4	4	692	1	0	0	0	0	0	1	0	0	18176	1189	41	2		2	ZNF673	23	46322764	Nonsense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09		46322764	108947796	154	60690										
UBA1	0	genome.wustl.edu	37	chrX	47074208	47074208	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cccaggatgacagagattgtGagccgtgtgtcgaagcgaaa	14	8	0	3			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	47074208	47074208	G	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.3057	p.V1019	0.986	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	29	0	0	34	28	45.16	-	-	-	T	47074208	G	T	47074208	2	4	692	1	0	0	0	0	0	0	0	1	16924	1277	45	2		2	UBA1	23	47074208	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	751444	47074208	108196352	155	60691										
ZNF41	0	genome.wustl.edu	37	chrX	47307019	47307019	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	atttactacattcatagtgtCtttctccagtatgagacttc	5	9	3	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	47307019	47307019	C	G	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.2180	p.R727T	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	95	0	0	87	56	39.16	-	-	-	G	47307019	C	G	47307019	3	3	692	1	0	0	0	0	1	0	0	0	17985	913	32	2	193	2	ZNF41	23	47307019	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	232811	47307019	107963541	156	60692										
CCDC22	0	genome.wustl.edu	37	chrX	49106129	49106129	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cagaactgcagccagctcatCcagaccatcgaggacacagg	10	14	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	49106129	49106129	C	G	SNP	CCDC22	ENST00000376227	human	ensembl	69_37n	1	known	missense	c.1713	p.I571M	1.000	pfam_DUF812	pfam_DUF812	-	no_errors	CCDC22	HGNC	ENSG00000101997	21	0	0	16	18	52.94	-	-	-	G	49106129	C	G	49106129	3	3	692	1	0	0	0	0	1	0	0	0	2823	845	30	2	1775	2	CCDC22	23	49106129	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	1799110	49106129	106164431	157	60693										
FAM123B	0	genome.wustl.edu	37	chrX	63412446	63412446	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	tggagaaggttctggtgttgGagaaacttttggcccagggg	17	5	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	63412446	63412446	G	C	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.721	p.P241A	0.054	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	55	0	0	27	25	48.08	-	-	-	C	63412446	G	C	63412446	3	2	692	1	0	0	0	0	1	0	0	0	5463	1174	41	2	2690	2	FAM123B	23	63412446	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	14306317	63412446	91858114	158	60694										
NONO	0	genome.wustl.edu	37	chrX	70516865	70516865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	gatggagatggaagctgcacGccatgagcaccaggtcatgc	14	10	1	2			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	70516865	70516865	G	A	SNP	NONO	ENST00000276079	human	ensembl	69_37n	1	known	missense	c.911	p.R304H	0.997	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NONO	HGNC	ENSG00000147140	42	0	0	28	21	42	-	-	-	A	70516865	G	A	70516865	3	1	692	1	0	0	0	0	1	0	0	0	10606	1087	38	1	929	1	NONO	23	70516865	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	7104419	70516865	84753695	159	60695										
CHM	0	genome.wustl.edu	37	chrX	85236772	85236772	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	ttagccaggacaatagtcctGaaaagctaaaactggcccag	9	10	0	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	85236772	85236772	G	A	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.158	p.S53L	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	46	0	0	36	38	51.35	-	-	-	A	85236772	G	A	85236772	3	1	692	1	0	0	0	0	1	0	0	0	3379	1294	45	2	1878	2	CHM	23	85236772	Missense_Mutation	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	14719907	85236772	70033788	160	60696										
ODZ1	0	genome.wustl.edu	37	chrX	123514646	123514646	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cacgtgattcttttcctcttCgacagttgtcccataccgga	7	13	2	1			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	123514646	123514646	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.7939	p.E2647K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	80	0	0	69	57	45.24	-	-	-	T	123514646	C	T	123514646	3	4	692	1	0	0	0	0	1	0	0	0	10907	893	31	1	263	1	ODZ1	23	123514646	Missense_Mutation	SNP	C	TCGA-D8-A1JN-01A-11D-A13L-09	38277874	123514646	31755914	161	60697										
FAM127B	0	genome.wustl.edu	37	chrX	134186091	134186091	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490683229813665	79	1.06813681546623e-27	3.82790309106099	4.73856209150327	3.51515151515152	2.22161400007923e-05	0.00103463737717976	58	cagcgacgcgccgcgggccgGaggggcccggccaggagggc	21	15	0	0			TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	X	134186091	134186091	G	C	SNP	FAM127B	ENST00000370775	human	ensembl	69_37n	-1	known	silent	c.48	p.L16	0.000	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950	23	0	0	25	17	40.48	-	-	-	C	134186091	G	C	134186091	2	2	692	1	0	0	0	0	0	0	0	1	5472	1161	41	2		2	FAM127B	23	134186091	Silent	SNP	G	TCGA-D8-A1JN-01A-11D-A13L-09	10671445	134186091	21084469	162	60698										
CDK11A	0	genome.wustl.edu	37	chr1	1635323	1635323	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gggaacagaggcttctgagtCagcagctccccgaagatgca	13	11	2	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	1635323	1635323	C	A	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	silent	c.1851	p.L617	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	92	0	0	52	24	31.58	-	-	-	A	1635323	C	A	1635323	2	1	693	1	0	0	0	0	0	0	0	1	3155	813	29	2		2	CDK11A	1	1635323	Silent	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		1635323	247615298	1	60699										
LPPR4	0	genome.wustl.edu	37	chr1	99764684	99764684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	accttactttctgactgtgtGcaaaccaaactatacctctc	4	13	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	99764684	99764684	G	A	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	missense	c.632	p.C211Y	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	116	1	0.85	41	56	57.73	-	-	-	A	99764684	G	A	99764684	3	1	693	1	0	0	0	0	1	0	0	0	8993	1319	46	4	646	4	LPPR4	1	99764684	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	98129361	99764684	149485937	2	60700										
RSBN1	0	genome.wustl.edu	37	chr1	114340437	114340437	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ttcatctttcagatacctgaAggactccttattaagtcctg	6	10	3	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	114340437	114340437	A	G	SNP	RSBN1	ENST00000261441	human	ensembl	69_37n	-1	known	missense	c.925	p.F309L	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019	67	0	0	23	27	54	-	-	-	G	114340437	A	G	114340437	3	3	693	1	0	0	0	0	1	0	0	0	13782	72	3	5	1507	5	RSBN1	1	114340437	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	14575753	114340437	134910184	3	60701										
PEX19	0	genome.wustl.edu	37	chr1	160252800	160252800	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtggggttcttcctcagccaActccttcattgccttctcga	8	14	4	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	160252800	160252800	A	C	SNP	PEX19	ENST00000368072	human	ensembl	69_37n	-1	known	missense	c.280	p.L94V	0.998	pfam_Pex19	pfam_Pex19	-	no_errors	PEX19	HGNC	ENSG00000162735	97	0	0	117	59	33.52	-	-	-	C	160252800	A	C	160252800	3	2	693	1	0	0	0	0	1	0	0	0	11818	40	2	5	643	5	PEX19	1	160252800	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	45912363	160252800	88997821	4	60702										
LY9	0	genome.wustl.edu	37	chr1	160769623	160769623	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ccgtgactctccccctaaacAtctcagtagacacagagatt	6	14	2	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	160769623	160769623	A	C	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.205	p.I69L	0.004	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	42	0	0	88	21	19.27	-	-	-	C	160769623	A	C	160769623	3	2	693	1	0	0	0	0	1	0	0	0	9168	217	8	5	211	5	LY9	1	160769623	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	516823	160769623	88480998	5	60703										
CEP350	0	genome.wustl.edu	37	chr1	180063342	180063342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggagaagcaacagcagtttaCagaagaggaagacaacctat	11	7	0	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	180063342	180063342	C	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.8102	p.T2701I	0.008	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	38	0	0	80	25	23.58	-	-	-	T	180063342	C	T	180063342	3	4	693	1	0	0	0	0	1	0	0	0	3283	478	17	4	8232	4	CEP350	1	180063342	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	19293719	180063342	69187279	6	60704										
RGS8	0	genome.wustl.edu	37	chr1	182640821	182640821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ccagtcctcatggcctgaggGtctttgccaactggatggtc	12	12	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	182640821	182640821	G	T	SNP	RGS8	ENST00000258302	human	ensembl	69_37n	-1	known	missense	c.51	p.D17E	0.999	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS8	HGNC	ENSG00000135824	122	0	0	292	46	13.61	-	-	-	T	182640821	G	T	182640821	3	4	693	1	0	0	0	0	1	0	0	0	13396	1252	44	4	595	4	RGS8	1	182640821	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	2577479	182640821	66609800	7	60705										
EPRS	0	genome.wustl.edu	37	chr1	220195746	220195746	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgcagcgataaagggttggaTctctcatgcatccattgtta	10	8	2	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	220195746	220195746	T	A	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.1058	p.D353V	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_Ib_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	242	0	0	328	122	26.93	-	-	-	A	220195746	T	A	220195746	3	1	693	1	0	0	0	0	1	0	0	0	5228	1435	50	5	3576	5	EPRS	1	220195746	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	37554925	220195746	29054875	8	60706										
OR2L3	0	genome.wustl.edu	37	chr1	248224268	248224268	+	Silent	SNP	G	G	T													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aagtctatctccttcactggGtgtgggattcagagtttctt							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	248224268	248224268	G	T	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	silent	c.285	p.G95	0.009	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	201	2	0.99	209	123	36.94	-	-	-	T	248224268	G	T	248224268	2	4	693	1	0	0	0	0	0	0	0	1	11081	1248	44	4		4	OR2L3	1	248224268	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	28028522	248224268	1026353	9	60707	450	2								
OR2L3	0	genome.wustl.edu	37	chr1	248224269	248224269	+	Missense_Mutation	SNP	T	T	C													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agtctatctccttcactgggTgtgggattcagagtttcttc							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	1	248224269	248224269	T	C	SNP	OR2L3	ENST00000359959	human	ensembl	69_37n	1	known	missense	c.286	p.C96R	0.985	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128	199	1	0.5	208	121	36.67	-	-	-	C	248224269	T	C	248224269	3	2	693	1	0	0	0	0	1	0	0	0	11081	1696	59	5	288	5	OR2L3	1	248224269	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	1	248224269	1026352	10	60708	450	2								
FHL2	0	genome.wustl.edu	37	chr2	105979846	105979846	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctgtgaagcgctgcccagacAgctgcttcctgcaggcggtg	14	13	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	2	105979846	105979846	A	T	SNP	FHL2	ENST00000322142	human	ensembl	69_37n	-1	known	missense	c.584	p.L195Q	1.000	pfam_Znf_LIM,smart_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL2	HGNC	ENSG00000115641	40	0	0	14	8	36.36	-	-	-	T	105979846	A	T	105979846	3	4	693	1	0	0	0	0	1	0	0	0	5925	188	7	5	263	5	FHL2	2	105979846	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09		105979846	137219527	11	60709										
SCN9A	0	genome.wustl.edu	37	chr2	167163093	167163093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgtcagaatagtgcacatgaTgagcatgctgaataaggtag	12	5	1	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	2	167163093	167163093	T	C	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.397	p.I133V	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	112	0	0	101	67	39.88	-	-	-	C	167163093	T	C	167163093	3	2	693	1	0	0	0	0	1	0	0	0	14013	1464	51	5	5635	5	SCN9A	2	167163093	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	61183247	167163093	76036280	12	60710										
RBM45	0	genome.wustl.edu	37	chr2	178988887	178988887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gctctggatcacagttgcctCaaatccagacagatgttgta	9	10	3	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	2	178988887	178988887	C	G	SNP	RBM45	ENST00000286070	human	ensembl	69_37n	1	known	missense	c.1102	p.Q368E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636	18	0	0	15	12	44.44	-	-	-	G	178988887	C	G	178988887	3	3	693	1	0	0	0	0	1	0	0	0	13222	827	29	2	1132	2	RBM45	2	178988887	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	11825794	178988887	64210486	13	60711										
TTN	0	genome.wustl.edu	37	chr2	179433377	179433377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	atctttagtccaggtaatggTtggcttaggacgtccagaaa	11	7	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	2	179433377	179433377	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.69778	p.T23260A	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	91	0	0	79	42	34.71	-	-	-	C	179433377	T	C	179433377	3	2	693	1	0	0	0	0	1	0	0	0	16832	1725	60	5	30645	5	TTN	2	179433377	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	444490	179433377	63765996	14	60712										
PIKFYVE	0	genome.wustl.edu	37	chr2	209190360	209190360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtttgagaagggtgagcaggAaaataaaaatcttccgcagg	13	5	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	2	209190360	209190360	A	G	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	missense	c.2825	p.E942G	0.999	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	46	0	0	22	10	31.25	-	-	-	G	209190360	A	G	209190360	3	3	693	1	0	0	0	0	1	0	0	0	11998	246	9	5	2910	5	PIKFYVE	2	209190360	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	29756983	209190360	34009013	15	60713										
CCDC80	0	genome.wustl.edu	37	chr3	112358086	112358086	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctccagcttcaggaagctcaTcagcttagggatgaggctag	12	10	3	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	112358086	112358086	T	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.667	p.M223L	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	42	0	0	42	15	26.32	-	-	-	A	112358086	T	A	112358086	3	1	693	1	0	0	0	0	1	0	0	0	2881	1435	50	5	2213	5	CCDC80	3	112358086	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09		112358086	85664344	16	60714										
GPR156	0	genome.wustl.edu	37	chr3	119899984	119899986	+	In_Frame_Del	DEL	GAT	GAT	-													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	atccatacctggggaatgaaGatgaagcagttgattgtagt							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	119899984	119899986	GAT	-	DEL	GPR156	ENST00000315843	human	ensembl	69_37n	-1	known	in_frame_del	c.921_919	p.I307in_frame_del	1.000:1.000:1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	52	0	0	51	19	27.14	-	-	-	-	119899986	GAT	-	119899984	7	5	693	1	0	1	0	1	0	0	0	0	6711	932	33	0	1535	0	GPR156	3	119899984	In_Frame_Del	DEL	GAT	TCGA-D8-A1JP-01A-11D-A13L-09	7541898	119899984	78122446	17	60715										
KALRN	0	genome.wustl.edu	37	chr3	124281865	124281865	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gcccttggagggtctggtccCcagcagcgccctgtgcatct	13	15	2	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	124281865	124281865	C	G	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.5105	p.P1702R	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	12	0	0	9	4	30.77	-	-	-	G	124281865	C	G	124281865	3	3	693	1	0	0	0	0	1	0	0	0	8029	623	22	4	5306	4	KALRN	3	124281865	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	4381881	124281865	73740565	18	60716										
ZNF148	0	genome.wustl.edu	37	chr3	124951438	124951438	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gggcctcagctttcttctgaGaagtcacttgatccagaaag	10	10	4	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	124951438	124951438	G	A	SNP	ZNF148	ENST00000360647	human	ensembl	69_37n	-1	known	missense	c.2132	p.S711F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848	47	0	0	37	12	24.49	-	-	-	A	124951438	G	A	124951438	3	1	693	1	0	0	0	0	1	0	0	0	17830	942	33	2	256	2	ZNF148	3	124951438	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	669573	124951438	73070992	19	60717										
P2RY13	0	genome.wustl.edu	37	chr3	151046415	151046415	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctcaaaggtctgatgatcttGaggaatctgtcaaaggctat	10	7	5	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	151046415	151046415	G	C	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	35	0	0	33	6	15.38	-	-	-	C	151046415	G	C	151046415	2	2	693	1	0	0	0	0	0	0	0	1	11423	1277	45	2		2	P2RY13	3	151046415	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	26094977	151046415	46976015	20	60718										
LEKR1	0	genome.wustl.edu	37	chr3	156570747	156570747	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agaacttgaacagtacaaaaTtgacaacaaatccaaaacag	5	8	0	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	156570747	156570747	T	C	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	missense	c.239	p.I80T	0.234	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	55	0	0	60	30	33.33	-	-	-	C	156570747	T	C	156570747	3	2	693	1	0	0	0	0	1	0	0	0	8771	1493	52	5	245	5	LEKR1	3	156570747	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	5524332	156570747	41451683	21	60719										
PIK3CA	0	genome.wustl.edu	37	chr3	178916946	178916946	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtaggcaaccgtgaagaaaaGatcctcaatcgagaaattgg	11	7	1	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	178916946	178916946	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.333	p.K111N	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	18	0	0	32	31	49.21	-	-	-	C	178916946	G	C	178916946	3	2	693	1	0	0	0	0	1	0	0	0	11987	933	33	2	335	2	PIK3CA	3	178916946	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	22346199	178916946	19105484	22	60720										
BCL6	0	genome.wustl.edu	37	chr3	187447483	187447483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggctgtactcaccagggactGgcctggcactatcacatggg	13	12	2	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	187447483	187447483	G	A	SNP	BCL6	ENST00000232014	human	ensembl	69_37n	-1	known	missense	c.710	p.P237L	0.939	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916	53	0	0	46	18	28.12	-	-	-	A	187447483	G	A	187447483	3	1	693	1	0	0	0	0	1	0	0	0	1380	1348	47	4	1434	4	BCL6	3	187447483	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	8530537	187447483	10574947	23	60721										
IL1RAP	0	genome.wustl.edu	37	chr3	190374301	190374301	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aaactcaatggatacaaaatGgcaccagattggaaccccct	7	11	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	3	190374301	190374301	G	T	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.1969	p.G657C	1.000	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	61	0	0	65	16	19.51	-	-	-	T	190374301	G	T	190374301	3	4	693	1	0	0	0	0	1	0	0	0	7714	1348	47	4	2399	4	IL1RAP	3	190374301	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	2926818	190374301	7648129	24	60722										
GFM2	0	genome.wustl.edu	37	chr5	74047238	74047238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ataacctttccaatcaaatgTaacagcagctgattgaatag	6	8	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	5	74047238	74047238	T	C	SNP	GFM2	ENST00000296805	human	ensembl	69_37n	-1	known	missense	c.385	p.T129A	0.994	pfam_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347	70	0	0	26	32	55.17	-	-	-	C	74047238	T	C	74047238	3	2	693	1	0	0	0	0	1	0	0	0	6394	1638	57	5	2050	5	GFM2	5	74047238	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09		74047238	106868022	25	60723										
EBF1	0	genome.wustl.edu	37	chr5	158135133	158135133	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgcccgaggagctgctgcagTtggaggggaggcttgtggag	20	7	0	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	5	158135133	158135133	T	G	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	missense	c.1598	p.N533T	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	100	0	0	34	38	52.78	-	-	-	G	158135133	T	G	158135133	3	3	693	1	0	0	0	0	1	0	0	0	4915	1725	60	5	185	5	EBF1	5	158135133	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	84087895	158135133	22780127	26	60724										
CDHR2	0	genome.wustl.edu	37	chr5	176004753	176004753	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gagcttgtacgtcctcacggTgccagagcacagcgccaccg	12	15	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	5	176004753	176004753	T	A	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.1466	p.V489E	0.035	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	62	0	0	31	4	11.11	-	-	-	A	176004753	T	A	176004753	3	1	693	1	0	0	0	0	1	0	0	0	3148	1696	59	5	1516	5	CDHR2	5	176004753	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	17869620	176004753	4910507	27	60725										
ZNF346	0	genome.wustl.edu	37	chr5	176471467	176471467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tcctcccctgtcgtggcccaGtcgcactacctggggaagac	11	16	0	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	5	176471467	176471467	G	C	SNP	ZNF346	ENST00000261948	human	ensembl	69_37n	1	known	missense	c.525	p.Q175H	1.000	smart_Znf_U1,smart_Znf_C2H2-like	smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF346	HGNC	ENSG00000113761	80	0	0	33	28	45.9	-	-	-	C	176471467	G	C	176471467	3	2	693	1	0	0	0	0	1	0	0	0	17956	1020	36	4	464	4	ZNF346	5	176471467	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	466714	176471467	4443793	28	60726										
MCHR2	0	genome.wustl.edu	37	chr6	100369062	100369062	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggggcagcactcaggataaaGactaccaccagcaccagcac	10	14	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	100369062	100369062	G	A	SNP	MCHR2	ENST00000281806	human	ensembl	69_37n	-1	known	silent	c.777	p.V259	0.943	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_MCH2_receptor,prints_7TM_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	122	0	0	259	58	18.3	-	-	-	A	100369062	G	A	100369062	2	1	693	1	0	0	0	0	0	0	0	1	9454	929	33	2		2	MCHR2	6	100369062	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		100369062	70746005	29	60727										
PRDM1	0	genome.wustl.edu	37	chr6	106554322	106554322	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gggctttactcagctcgcccAcctgcagaaacactacctgg	9	15	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	106554322	106554322	A	G	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.1850	p.H617R	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	53	0	0	79	16	16.84	-	-	-	G	106554322	A	G	106554322	3	3	693	1	0	0	0	0	1	0	0	0	12531	159	6	5	1885	5	PRDM1	6	106554322	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	6185260	106554322	64560745	30	60728										
FIG4	0	genome.wustl.edu	37	chr6	110064914	110064914	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	atttgcacatgtggctgcccTtcactttgaccagatgttcc	8	12	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	110064914	110064914	T	A	SNP	FIG4	ENST00000230124	human	ensembl	69_37n	1	known	missense	c.1076	p.L359H	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367	142	0	0	208	100	31.75	-	-	-	A	110064914	T	A	110064914	3	1	693	1	0	0	0	0	1	0	0	0	5934	1609	56	5	1114	5	FIG4	6	110064914	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	3510592	110064914	61050153	31	60729										
NKAIN2	0	genome.wustl.edu	37	chr6	124676413	124676413	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tctctcttgcttctctacagTatgctgtctggctagtcctc	7	13	4	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	124676413	124676413	T	C	SNP	NKAIN2	ENST00000368417	human	ensembl	69_37n	1	known	missense	c.193	p.Y65H	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	245	0	0	602	109	15.33	-	-	-	C	124676413	T	C	124676413	3	2	693	1	0	0	0	0	1	0	0	0	10508	1652	57	5	203	5	NKAIN2	6	124676413	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	14611499	124676413	46438654	32	60730										
KIAA1244	0	genome.wustl.edu	37	chr6	138655269	138655269	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gctggcttcctcagatacatCtctatgcagaacttggcagt	9	11	2	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	138655269	138655269	C	A	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	silent	c.5286	p.I1762	1.000	NULL	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	32	0	0	13	27	67.5	-	-	-	A	138655269	C	A	138655269	2	1	693	1	0	0	0	0	0	0	0	1	8269	903	32	2		2	KIAA1244	6	138655269	Silent	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	13978856	138655269	32459798	33	60731										
FNDC1	0	genome.wustl.edu	37	chr6	159670141	159670141	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	actgctaccacaccgagggtGatcccagaggaaggcgccat	12	13	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	159670141	159670141	G	T	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	1	novel	missense	c.4447	p.D1483Y	0.015	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	66	0	0	61	20	24.69	-	-	-	T	159670141	G	T	159670141	3	4	693	1	0	0	0	0	1	0	0	0	6014	1277	45	2	4823	2	FNDC1	6	159670141	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	21014872	159670141	11444926	34	60732										
LPA	0	genome.wustl.edu	37	chr6	160958958	160958958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgtagtctggggatggcagaCaagctggcattactttgtca	13	7	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	6	160958958	160958958	C	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.5771	p.C1924F	1.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	92	0	0	128	47	26.86	-	-	-	A	160958958	C	A	160958958	3	1	693	1	0	0	0	0	1	0	0	0	8969	478	17	4	363	4	LPA	6	160958958	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	1288817	160958958	10156109	35	60733										
LAMB4	0	genome.wustl.edu	37	chr7	107748102	107748102	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	acctgttgagggttcaatatCcgagtatttggagtcacaaa	10	7	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	7	107748102	107748102	C	A	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.565	p.D189Y	0.696	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	82	0	0	58	28	32.56	-	-	-	A	107748102	C	A	107748102	3	1	693	1	0	0	0	0	1	0	0	0	8667	855	30	2	4836	2	LAMB4	7	107748102	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		107748102	51390561	36	60734										
CCDC136	0	genome.wustl.edu	37	chr7	128452928	128452928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgcctgtgaaagggagttcaAggagtgcatggaatgccttg	15	6	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	7	128452928	128452928	A	C	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.2708	p.K903T	0.079	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	53	0	0	23	9	28.12	-	-	-	C	128452928	A	C	128452928	3	2	693	1	0	0	0	0	1	0	0	0	2795	72	3	5	2762	5	CCDC136	7	128452928	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	20704826	128452928	30685735	37	60735										
MLL3	0	genome.wustl.edu	37	chr7	151960149	151960149	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gatttcataactggttgaagAcaaaaagtatgatacccttt	7	6	1	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	7	151960149	151960149	A	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.1251	p.C417*	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	77	0	0	63	16	20.25	-	-	-	T	151960149	A	T	151960149	4	4	693	1	0	0	0	0	0	1	0	0	9693	273	10	5	13688	5	MLL3	7	151960149	Nonsense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	23507221	151960149	7178514	38	60736										
SORBS3	0	genome.wustl.edu	37	chr8	22424226	22424226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gccaggagggaagagaagaaGgtaaggaggggaccaggtgt	20	4	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	8	22424226	22424226	G	A	SNP	SORBS3	ENST00000521554	human	ensembl	69_37n	1	putative	missense	c.157	p.E53K	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_start_codon:pseudogene:no_stop_codon	SORBS3	HGNC	ENSG00000120896	27	0	0	2	9	81.82	-	-	-	A	22424226	G	A	22424226	3	1	693	1	0	0	0	0	1	0	0	0	15018	1014	35	4	1193	4	SORBS3	8	22424226	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		22424226	123939796	39	60737										
ZFPM2	0	genome.wustl.edu	37	chr8	106431375	106431375	+	Missense_Mutation	SNP	C	C	A													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cctgattctttttcaagggcCgcttgaagatgccattgaag							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	8	106431375	106431375	C	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	missense	c.44	p.P15Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	59	0	0	63	12	16	-	-	-	A	106431375	C	A	106431375	3	1	693	1	0	0	0	0	1	0	0	0	17754	652	23	3	50	3	ZFPM2	8	106431375	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	84007149	106431375	39932647	40	60738	451	2								
ZFPM2	0	genome.wustl.edu	37	chr8	106431376	106431376	+	Silent	SNP	G	G	A													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctgattctttttcaagggccGcttgaagatgccattgaaga							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	8	106431376	106431376	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	69_37n	1	known	silent	c.45	p.P15	0.983	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946	60	0	0	63	13	17.11	-	-	-	A	106431376	G	A	106431376	2	1	693	1	0	0	0	0	0	0	0	1	17754	1074	38	1		1	ZFPM2	8	106431376	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	1	106431376	39932646	41	60739	451	2								
DNAI1	0	genome.wustl.edu	37	chr9	34514447	34514447	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctatgacgcccacaacatgtCagtggacactgtgtcctgga	10	12	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	9	34514447	34514447	C	G	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	nonsense	c.1625	p.S542*	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	101	0	0	56	27	32.53	-	-	-	G	34514447	C	G	34514447	4	3	693	1	0	0	0	0	0	1	0	0	4644	838	29	2	1691	2	DNAI1	9	34514447	Nonsense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		34514447	106698984	42	60740										
GNA14	0	genome.wustl.edu	37	chr9	80043864	80043864	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gacctggtcatattcactcaGagcaaccaagaaaataatgg	8	9	3	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	9	80043864	80043864	G	A	SNP	GNA14	ENST00000341700	human	ensembl	69_37n	-1	known	silent	c.682	p.L228	0.989	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049	75	0	0	68	38	35.85	-	-	-	A	80043864	G	A	80043864	2	1	693	1	0	0	0	0	0	0	0	1	6554	933	33	2		2	GNA14	9	80043864	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	45529417	80043864	61169567	43	60741										
C9orf84	0	genome.wustl.edu	37	chr9	114466195	114466195	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cagtgtgttcatcaattgtcAccactacataacactctgaa	5	11	4	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	9	114466195	114466195	A	C	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.2741	p.V914G	0.997	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	142	0	0	111	59	34.71	-	-	-	C	114466195	A	C	114466195	3	2	693	1	0	0	0	0	1	0	0	0	2525	159	6	5	1621	5	C9orf84	9	114466195	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	34422331	114466195	26747236	44	60742										
ATHL1	0	genome.wustl.edu	37	chr11	290850	290850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aggctgaggctcaggcctgcCtcactgaggccctgcagctg	14	14	2	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	11	290850	290850	C	G	SNP	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	missense	c.643	p.L215V	0.000	superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	12	0	0	5	7	58.33	-	-	-	G	290850	C	G	290850	3	3	693	1	0	0	0	0	1	0	0	0	1108	681	24	4	653	4	ATHL1	11	290850	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		290850	134715666	45	60743										
C11orf35	0	genome.wustl.edu	37	chr11	558890	558890	+	Frame_Shift_Del	DEL	G	G	-													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gcagaccaccggtgcggggtGgggcgtggtgtctggcaggc							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	11	558890	558890	G	-	DEL	C11orf35	ENST00000329451	human	ensembl	69_37n	-1	known	frame_shift_del	c.124	p.H42fs	0.001	NULL	pfam_Lamin_tail_dom	-	no_errors	C11orf35	HGNC	ENSG00000185522	8	0	0	4	2	33.33	-	-	-	-	558890	G	-	558890	7	5	693	1	0	1	0	1	0	0	0	0	1649	1348	47	0	1832	0	C11orf35	11	558890	Frame_Shift_Del	DEL	G	TCGA-D8-A1JP-01A-11D-A13L-09	268040	558890	134447626	46	60744										
OR5F1	0	genome.wustl.edu	37	chr11	55761642	55761642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgtgttgaccatgaagttcaGcaaccctgcagcaaaagccc	9	12	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	11	55761642	55761642	G	A	SNP	OR5F1	ENST00000278409	human	ensembl	69_37n	-1	known	silent	c.460	p.L154	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133	35	0	0	16	6	27.27	-	-	-	A	55761642	G	A	55761642	2	1	693	1	0	0	0	0	0	0	0	1	11231	962	34	4		4	OR5F1	11	55761642	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	55202752	55761642	79244874	47	60745										
OR10Q1	0	genome.wustl.edu	37	chr11	57995900	57995900	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggccaggcccagggccccacCcagcatctgcgtgcacagct	12	18	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	11	57995900	57995900	C	A	SNP	OR10Q1	ENST00000316770	human	ensembl	69_37n	-1	known	missense	c.448	p.G150C	0.032	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475	52	0	0	48	22	31.43	-	-	-	A	57995900	C	A	57995900	3	1	693	1	0	0	0	0	1	0	0	0	10989	623	22	4	515	4	OR10Q1	11	57995900	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	2234258	57995900	77010616	48	60746										
FOLR1	0	genome.wustl.edu	37	chr11	71907115	71907115	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agcccagggcaaccccaatgAggaggtggcgaggttctatg	15	10	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	11	71907115	71907115	A	T	SNP	FOLR1	ENST00000312293	human	ensembl	69_37n	1	known	missense	c.668	p.E223V	1.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR1	HGNC	ENSG00000110195	117	0	0	49	21	29.58	-	-	-	T	71907115	A	T	71907115	3	4	693	1	0	0	0	0	1	0	0	0	6027	304	11	5	682	5	FOLR1	11	71907115	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	13911215	71907115	63099401	49	60747										
C1S	0	genome.wustl.edu	37	chr12	7177194	7177194	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gagaaccctttgaagaaaaaCagaggataattggaggatcc	11	6	0	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	7177194	7177194	C	T	SNP	C1S	ENST00000328916	human	ensembl	69_37n	1	known	nonsense	c.1306	p.Q436*	0.977	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	C1S	HGNC	ENSG00000182326	26	0	0	18	8	30.77	-	-	-	T	7177194	C	T	7177194	4	4	693	1	0	0	0	0	0	1	0	0	1993	479	17	4	1348	4	C1S	12	7177194	Nonsense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		7177194	126674701	50	60748										
LRRK2	0	genome.wustl.edu	37	chr12	40699719	40699719	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ttcctttggatgaactgcatCttaactttgattttaaacat	5	7	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	40699719	40699719	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.3910	p.L1304F	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	62	0	0	42	26	38.24	-	-	-	T	40699719	C	T	40699719	3	4	693	1	0	0	0	0	1	0	0	0	9099	913	32	2	4020	2	LRRK2	12	40699719	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	33522525	40699719	93152176	51	60749										
PFKM	0	genome.wustl.edu	37	chr12	48539018	48539018	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	atctttgccaatactccagaTtcgggctgtgttctggggat	11	9	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	48539018	48539018	T	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	silent	c.2118	p.D706	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	102	0	0	34	45	56.25	-	-	-	C	48539018	T	C	48539018	2	2	693	1	0	0	0	0	0	0	0	1	11839	1490	52	5		5	PFKM	12	48539018	Silent	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	7839299	48539018	85312877	52	60750										
KRT73	0	genome.wustl.edu	37	chr12	53002135	53002135	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cccaggcagcatgctgtagcCcccgctgacagagctgggcc	13	16	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	53002135	53002135	C	A	SNP	KRT73	ENST00000305748	human	ensembl	69_37n	-1	known	missense	c.1468	p.G490C	0.991	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	76	0	0	48	16	25	-	-	-	A	53002135	C	A	53002135	3	1	693	1	0	0	0	0	1	0	0	0	8539	623	22	4	158	4	KRT73	12	53002135	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	4463117	53002135	80849760	53	60751										
MON2	0	genome.wustl.edu	37	chr12	62929447	62929447	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgcctccccattatgctcttActgtattgaataccaccact	4	14	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	62929447	62929447	A	C	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	missense	c.1858	p.T620P	0.998	NULL	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	69	0	0	75	21	21.88	-	-	-	C	62929447	A	C	62929447	3	2	693	1	0	0	0	0	1	0	0	0	9772	391	14	5	1912	5	MON2	12	62929447	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	9927312	62929447	70922448	54	60752										
DAO	0	genome.wustl.edu	37	chr12	109278917	109278917	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ttcaccccactcaccaccacCgacgtggctgccggcctctg	8	20	3	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	109278917	109278917	C	G	SNP	DAO	ENST00000228476	human	ensembl	69_37n	1	known	silent	c.135	p.T45	0.779	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887	72	0	0	22	9	29.03	-	-	-	G	109278917	C	G	109278917	2	3	693	1	0	0	0	0	0	0	0	1	4263	639	23	3		3	DAO	12	109278917	Silent	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	46349470	109278917	24572978	55	60753										
RNF10	0	genome.wustl.edu	37	chr12	121001615	121001615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agagccccttgtcctcagcgGaagatggacagcatatgttc	11	11	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	121001615	121001615	G	A	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.1549	p.E517K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	60	0	0	36	18	33.33	-	-	-	A	121001615	G	A	121001615	3	1	693	1	0	0	0	0	1	0	0	0	13508	1175	41	2	1572	2	RNF10	12	121001615	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	11722698	121001615	12850280	56	60754										
ANKLE2	0	genome.wustl.edu	37	chr12	133331390	133331390	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cgagcaggtcttggatgtcaCagcttcctcctctggaggat	12	11	3	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	12	133331390	133331390	C	A	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.511	p.V171L	0.000	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	35	0	0	11	9	45	-	-	-	A	133331390	C	A	133331390	3	1	693	1	0	0	0	0	1	0	0	0	633	478	17	4	2353	4	ANKLE2	12	133331390	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	12329775	133331390	520505	57	60755										
MIPEP	0	genome.wustl.edu	37	chr13	24438286	24438286	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gaataaaaactaacctttcaGaaagtttgtcagatagtttt	6	5	2	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	13	24438286	24438286	G	A	SNP	MIPEP	ENST00000382172	human	ensembl	69_37n	-1	known	missense	c.986	p.S329F	0.796	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001	42	0	0	49	16	24.62	-	-	-	A	24438286	G	A	24438286	3	1	693	1	0	0	0	0	1	0	0	0	9663	942	33	2	1203	2	MIPEP	13	24438286	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		24438286	90731592	58	60756										
C1QTNF9B	0	genome.wustl.edu	37	chr13	24465974	24465974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tttccaatagggcccatgggGcccggtaaaccagttgggcc	13	12	0	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	13	24465974	24465974	G	A	SNP	C1QTNF9B	ENST00000382137	human	ensembl	69_37n	-1	known	silent	c.456	p.G152	0.972	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863	103	0	0	55	9	13.85	-	-	-	A	24465974	G	A	24465974	2	1	693	1	0	0	0	0	0	0	0	1	1990	1190	42	4		4	C1QTNF9B	13	24465974	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	27688	24465974	90703904	59	60757										
BRCA2	0	genome.wustl.edu	37	chr13	32914385	32914385	+	Frame_Shift_Del	DEL	C	C	-													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtaaatgtagtatagggaagCttcataagtcagtctcatct							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	13	32914385	32914385	C	-	DEL	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	frame_shift_del	c.5893	p.L1965fs	0.000	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	46	0	0	10	11	52.38	-	-	-	-	32914385	C	-	32914385	7	5	693	1	0	1	0	1	0	0	0	0	1507	797	28	0	5931	0	BRCA2	13	32914385	Frame_Shift_Del	DEL	C	TCGA-D8-A1JP-01A-11D-A13L-09	8448411	32914385	82255493	60	60758										
OR4K2	0	genome.wustl.edu	37	chr14	20344814	20344814	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	atattgcaatatgcaagcccCtgcactatgcttctgtcatt	6	11	2	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	20344814	20344814	C	G	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.388	p.L130V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	359	0	0	462	79	14.6	-	-	-	G	20344814	C	G	20344814	3	3	693	1	0	0	0	0	1	0	0	0	11145	680	24	4	390	4	OR4K2	14	20344814	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		20344814	87004726	61	60759										
HSPA2	0	genome.wustl.edu	37	chr14	65008759	65008759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgcaggacctgctgctactcGacgtgaccccgttgtcgctg	12	14	0	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	65008759	65008759	G	A	SNP	HSPA2	ENST00000247207	human	ensembl	69_37n	1	known	missense	c.1192	p.D398N	1.000	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	19	0	0	18	11	37.93	-	-	-	A	65008759	G	A	65008759	3	1	693	1	0	0	0	0	1	0	0	0	7464	1058	37	1	1194	1	HSPA2	14	65008759	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	44663945	65008759	42340781	62	60760										
PCNX	0	genome.wustl.edu	37	chr14	71576307	71576307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cgcaggagggcatggaaggcCatgtaagttcttttacaagc	13	8	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	71576307	71576307	C	T	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	missense	c.6883	p.H2295Y	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	64	0	0	44	11	20	-	-	-	T	71576307	C	T	71576307	3	4	693	1	0	0	0	0	1	0	0	0	11664	594	21	4	7021	4	PCNX	14	71576307	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	6567548	71576307	35773233	63	60761										
NUMB	0	genome.wustl.edu	37	chr14	73743366	73743366	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	attagtacgctgcttggactTattttctaatgcagcccact	7	10	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	73743366	73743366	T	G	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	missense	c.1876	p.K626Q	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	54	0	0	63	15	19.23	-	-	-	G	73743366	T	G	73743366	3	3	693	1	0	0	0	0	1	0	0	0	10824	1763	61	5	83	5	NUMB	14	73743366	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	2167059	73743366	33606174	64	60762										
KCNK13	0	genome.wustl.edu	37	chr14	90650936	90650936	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctcatgggtgtctgctgcatCtactccttgttcaatgtcat	8	11	5	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	90650936	90650936	C	G	SNP	KCNK13	ENST00000282146	human	ensembl	69_37n	1	known	missense	c.816	p.I272M	0.991	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl_TASK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315	62	0	0	29	23	43.4	-	-	-	G	90650936	C	G	90650936	3	3	693	1	0	0	0	0	1	0	0	0	8115	903	32	2	822	2	KCNK13	14	90650936	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	16907570	90650936	16698604	65	60763										
ITPK1	0	genome.wustl.edu	37	chr14	93424627	93424627	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aaccacgaacaccttgtacaGgacggcgttgtggttgatga	12	9	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	93424627	93424627	G	A	SNP	ITPK1	ENST00000267615	human	ensembl	69_37n	-1	known	silent	c.589	p.L197	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605	102	0	0	31	21	40.38	-	-	-	A	93424627	G	A	93424627	2	1	693	1	0	0	0	0	0	0	0	1	7970	991	35	4		4	ITPK1	14	93424627	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	2773691	93424627	13924913	66	60764										
EML1	0	genome.wustl.edu	37	chr14	100363567	100363567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	acttcatcgcatccgtggtgGtgttatacaacgtggaggag	13	8	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	14	100363567	100363567	G	T	SNP	EML1	ENST00000334192	human	ensembl	69_37n	1	known	missense	c.820	p.V274L	1.000	pfam_HELP,superfamily_Quinonprotein_ADH-like	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629	45	0	0	14	18	56.25	-	-	-	T	100363567	G	T	100363567	3	4	693	1	0	0	0	0	1	0	0	0	5133	1261	44	4	850	4	EML1	14	100363567	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	6938940	100363567	6985973	67	60765										
CYP1A2	0	genome.wustl.edu	37	chr15	75042230	75042230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agccatggggctggcccttgCtcgggcatgtgctgaccctg	15	13	0	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	15	75042230	75042230	C	G	SNP	CYP1A2	ENST00000343932	human	ensembl	69_37n	1	known	missense	c.151	p.L51V	0.145	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505	69	0	0	59	23	28.05	-	-	-	G	75042230	C	G	75042230	3	3	693	1	0	0	0	0	1	0	0	0	4181	797	28	4	153	4	CYP1A2	15	75042230	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		75042230	27489162	68	60766										
MTHFS	0	genome.wustl.edu	37	chr15	80181544	80181544	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gattctattctcaccatatcCatgtgattgctctggaaccg	7	11	3	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	15	80181544	80181544	C	G	SNP	MTHFS	ENST00000258874	human	ensembl	69_37n	-1	known	missense	c.270	p.M90I	1.000	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	-	no_errors	MTHFS	HGNC	ENSG00000136371	126	0	0	136	55	28.8	-	-	-	G	80181544	C	G	80181544	3	3	693	1	0	0	0	0	1	0	0	0	10004	594	21	4	349	4	MTHFS	15	80181544	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	5139314	80181544	22349848	69	60767										
SLCO3A1	0	genome.wustl.edu	37	chr15	92638112	92638112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tttcttcatcttccttcaggAatcctgttcacgatgctggt	7	11	5	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	15	92638112	92638112	A	T	SNP	SLCO3A1	ENST00000556649	human	ensembl	69_37n	1	putative	missense	c.27	p.R9S	0.998	pfam_OA_transporter	pfam_OA_transporter	-	no_stop_codon:bad_bp_length_for_coding_region	SLCO3A1	HGNC	ENSG00000176463	152	0	0	218	66	23.24	-	-	-	T	92638112	A	T	92638112	3	4	693	1	0	0	0	0	1	0	0	0	14817	260	9	5	658	5	SLCO3A1	15	92638112	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	12456568	92638112	9893280	70	60768										
RAB11FIP3	0	genome.wustl.edu	37	chr16	569771	569771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	caggagaagcagaagctgttGgatgagatagagtcgctgac	15	6	0	5			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	16	569771	569771	G	A	SNP	RAB11FIP3	ENST00000457159	human	ensembl	69_37n	1	known	silent	c.1875	p.L625	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP3	HGNC	ENSG00000090565	36	0	0	22	14	38.89	-	-	-	A	569771	G	A	569771	2	1	693	1	0	0	0	0	0	0	0	1	12978	1339	47	4		4	RAB11FIP3	16	569771	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		569771	89784982	71	60769										
BFAR	0	genome.wustl.edu	37	chr16	14748927	14748927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tcctgcccctctacaggttgCttttaactttgacagaggaa	8	11	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	16	14748927	14748927	C	G	SNP	BFAR	ENST00000261658	human	ensembl	69_37n	1	known	missense	c.643	p.L215V	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429	41	0	0	37	20	35.09	-	-	-	G	14748927	C	G	14748927	3	3	693	1	0	0	0	0	1	0	0	0	1419	797	28	4	657	4	BFAR	16	14748927	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	14179156	14748927	75605826	72	60770										
GTF3C1	0	genome.wustl.edu	37	chr16	27517381	27517381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggctctctcttcagcagctcCtgggaaggagggcggctgct	15	12	3	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	16	27517381	27517381	C	T	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.1609	p.G537R	0.004	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	100	0	0	43	13	23.21	-	-	-	T	27517381	C	T	27517381	3	4	693	1	0	0	0	0	1	0	0	0	6923	690	24	4	4832	4	GTF3C1	16	27517381	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	12768454	27517381	62837372	73	60771										
BANP	0	genome.wustl.edu	37	chr16	88014716	88014716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agcgactagaaatcaattgcCaggatccatctataaaggta	8	8	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	16	88014716	88014716	C	A	SNP	BANP	ENST00000286122	human	ensembl	69_37n	1	known	missense	c.145	p.Q49K	1.000	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530	116	0	0	62	63	50.4	-	-	-	A	88014716	C	A	88014716	3	1	693	1	0	0	0	0	1	0	0	0	1314	595	21	4	169	4	BANP	16	88014716	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	60497335	88014716	2340037	74	60772										
GEMIN4	0	genome.wustl.edu	37	chr17	649578	649578	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtgggtgccgagattgaccaCagccaggctgcacattttct	12	11	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	17	649578	649578	C	A	SNP	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	missense	c.1705	p.V569L	1.000	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	82	0	0	22	9	29.03	-	-	-	A	649578	C	A	649578	3	1	693	1	0	0	0	0	1	0	0	0	6382	478	17	4	1475	4	GEMIN4	17	649578	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		649578	80545632	75	60773										
SGSM2	0	genome.wustl.edu	37	chr17	2282366	2282366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tgtgtttgctgtgtgggaggTgatctgggcagccaggcaca	17	7	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	17	2282366	2282366	T	C	SNP	SGSM2	ENST00000268989	human	ensembl	69_37n	1	known	missense	c.2936	p.V979A	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	97	0	0	18	38	67.86	-	-	-	C	2282366	T	C	2282366	3	2	693	1	0	0	0	0	1	0	0	0	14311	1696	59	5	3026	5	SGSM2	17	2282366	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	1632788	2282366	78912844	76	60774										
OR3A1	0	genome.wustl.edu	37	chr17	3195744	3195744	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agctgccaggatgctgaggtTgcccctgaccgtgaccaggt	14	12	0	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	17	3195744	3195744	T	G	SNP	OR3A1	ENST00000323404	human	ensembl	69_37n	-1	known	missense	c.133	p.N45H	0.996	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090	51	0	0	16	23	58.97	-	-	-	G	3195744	T	G	3195744	3	3	693	1	0	0	0	0	1	0	0	0	11110	1812	63	5	818	5	OR3A1	17	3195744	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	913378	3195744	77999466	77	60775										
ZMYND15	0	genome.wustl.edu	37	chr17	4648519	4648519	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctccaccccagtccctccgaGtgccagccttcttcaccgag	7	20	2	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	17	4648519	4648519	G	C	SNP	ZMYND15	ENST00000433935	human	ensembl	69_37n	1	known	missense	c.1906	p.V636L	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497	19	0	0	2	5	71.43	-	-	-	C	4648519	G	C	4648519	3	2	693	1	0	0	0	0	1	0	0	0	17804	1029	36	4	1952	4	ZMYND15	17	4648519	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	1452775	4648519	76546691	78	60776										
GALR2	0	genome.wustl.edu	37	chr17	74071177	74071177	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cttaacctgggcgtggccgaCctgtgtttcatcctgtgctg	12	12	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	17	74071177	74071177	C	A	SNP	GALR2	ENST00000329003	human	ensembl	69_37n	1	known	missense	c.213	p.D71E	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_Galnin_2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687	40	0	0	31	6	16.22	-	-	-	A	74071177	C	A	74071177	3	1	693	1	0	0	0	0	1	0	0	0	6278	506	18	4	215	4	GALR2	17	74071177	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	69422658	74071177	7124033	79	60777										
MLLT1	0	genome.wustl.edu	37	chr19	6270707	6270707	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ccagtcgtgagtgaacccctCcgtggtgggcttcttgcgca	13	13	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	6270707	6270707	C	G	SNP	MLLT1	ENST00000252674	human	ensembl	69_37n	-1	known	missense	c.76	p.E26Q	1.000	pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382	36	0	0	16	13	44.83	-	-	-	G	6270707	C	G	6270707	3	3	693	1	0	0	0	0	1	0	0	0	9696	864	30	2	1647	2	MLLT1	19	6270707	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		6270707	52858276	80	60778										
MUC16	0	genome.wustl.edu	37	chr19	9089493	9089493	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cttgttgctgcattgcttagGgtcatggaggaaagaacggc	14	7	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	9089493	9089493	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.2322	p.T774	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	152	0	0	125	47	27.33	-	-	-	T	9089493	G	T	9089493	2	4	693	1	0	0	0	0	0	0	0	1	10045	1219	43	4		4	MUC16	19	9089493	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	2818786	9089493	50039490	81	60779										
COL5A3	0	genome.wustl.edu	37	chr19	10097037	10097037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	cctcctcgccagcctgccccGcctgccccttcggcccctca	7	25	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	10097037	10097037	G	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.2306	p.A769V	0.131	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	24	0	0	10	7	36.84	-	-	-	A	10097037	G	A	10097037	3	1	693	1	0	0	0	0	1	0	0	0	3728	1087	38	1	3083	1	COL5A3	19	10097037	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	1007544	10097037	49031946	82	60780										
NCAN	0	genome.wustl.edu	37	chr19	19327774	19327774	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agatccaggatgggggccccGtttgtctgggccttgggcct	16	11	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	19327774	19327774	G	T	SNP	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	silent	c.12	p.P4	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	142	0	0	87	35	28.69	-	-	-	T	19327774	G	T	19327774	2	4	693	1	0	0	0	0	0	0	0	1	10276	1132	40	3		3	NCAN	19	19327774	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	9230737	19327774	39801209	83	60781										
ANKRD27	0	genome.wustl.edu	37	chr19	33134043	33134043	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ccttacctgaactccggtttCacaccaatatctttctgctg	5	14	3	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	33134043	33134043	C	A	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	silent	c.768	p.V256	0.993	pfscan_VPS9	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	71	0	0	71	41	36.61	-	-	-	A	33134043	C	A	33134043	2	1	693	1	0	0	0	0	0	0	0	1	655	813	29	2		2	ANKRD27	19	33134043	Silent	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	13806269	33134043	25994940	84	60782										
SIPA1L3	0	genome.wustl.edu	37	chr19	38610164	38610164	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aaactgtgtctccaacacccCcatcgactccaccggcaaat	5	17	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	38610164	38610164	C	G	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	missense	c.2510	p.P837R	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	73	0	0	43	19	30.65	-	-	-	G	38610164	C	G	38610164	3	3	693	1	0	0	0	0	1	0	0	0	14420	623	22	4	2536	4	SIPA1L3	19	38610164	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	5476121	38610164	20518819	85	60783										
ZFP112	0	genome.wustl.edu	37	chr19	44832009	44832009	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tcacatttgtatggtttcccTcctgtgtgaaccctccgatg	8	12	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	44832009	44832009	T	G	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	silent	c.2370	p.G790	0.929	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	190	0	0	225	115	33.82	-	-	-	G	44832009	T	G	44832009	2	3	693	1	0	0	0	0	0	0	0	1	17734	1538	54	5		5	ZFP112	19	44832009	Silent	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	6221845	44832009	14296974	86	60784										
SYMPK	0	genome.wustl.edu	37	chr19	46334728	46334728	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ggggacatggagctcagggaAcccaccaccgagatggcttg	15	11	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	19	46334728	46334728	A	C	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	silent	c.1512	p.G504	0.930	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	82	0	0	40	29	42.03	-	-	-	C	46334728	A	C	46334728	2	2	693	1	0	0	0	0	0	0	0	1	15531	30	2	5		5	SYMPK	19	46334728	Silent	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09	1502719	46334728	12794255	87	60785										
PAK7	0	genome.wustl.edu	37	chr20	9546953	9546953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tttgctttgactttgaggtaGtttggcagggcccctggggt	15	7	0	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	20	9546953	9546953	G	T	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	missense	c.1069	p.L357I	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	65	0	0	68	9	11.69	-	-	-	T	9546953	G	T	9546953	3	4	693	1	0	0	0	0	1	0	0	0	11478	1020	36	4	1114	4	PAK7	20	9546953	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		9546953	53478567	88	60786										
CRNKL1	0	genome.wustl.edu	37	chr20	20033136	20033136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gactgacctttgacctctcgCttgagccgtgacggaggcgg	14	12	1	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	20	20033136	20033136	C	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.334	p.A112S	0.001	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	26	0	0	36	13	26.53	-	-	-	A	20033136	C	A	20033136	3	1	693	1	0	0	0	0	1	0	0	0	3921	797	28	4	2268	4	CRNKL1	20	20033136	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	10486183	20033136	42992384	89	60787										
ZHX3	0	genome.wustl.edu	37	chr20	39831411	39831411	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gactttgcgctctgccaagaTatggctgctgggcatttcca	11	11	1	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	20	39831411	39831411	T	C	SNP	ZHX3	ENST00000373263	human	ensembl	69_37n	-1	known	missense	c.2146	p.I716V	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ZHX3	HGNC	ENSG00000174306	100	0	0	69	14	16.87	-	-	-	C	39831411	T	C	39831411	3	2	693	1	0	0	0	0	1	0	0	0	17773	1406	49	5	732	5	ZHX3	20	39831411	Missense_Mutation	SNP	T	TCGA-D8-A1JP-01A-11D-A13L-09	19798275	39831411	23194109	90	60788										
CHD6	0	genome.wustl.edu	37	chr20	40076584	40076584	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	agtatttcagcttttaggtaGtacagcatccggactcgcaa	9	9	1	0			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	20	40076584	40076584	G	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	nonsense	c.3711	p.Y1237*	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	68	0	0	101	17	14.41	-	-	-	T	40076584	G	T	40076584	4	4	693	1	0	0	0	0	0	1	0	0	3358	1024	36	4	4492	4	CHD6	20	40076584	Nonsense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	245173	40076584	22948936	91	60789										
DYRK1A	0	genome.wustl.edu	37	chr21	38845158	38845158	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gccttatcatattctgaccaGattcagcaacctctaactaa	4	12	4	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	21	38845158	38845158	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.183	p.Q61H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	62	0	0	45	17	27.42	-	-	-	C	38845158	G	C	38845158	3	2	693	1	0	0	0	0	1	0	0	0	4889	933	33	2	189	2	DYRK1A	21	38845158	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09		38845158	9284737	92	60790										
PRAME	0	genome.wustl.edu	37	chr22	22890903	22890903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gtggcagaggctctctccagCagagcttggaggggctcggg	18	10	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	22	22890903	22890903	C	T	SNP	PRAME	ENST00000398741	human	ensembl	69_37n	-1	known	silent	c.1116	p.L372	0.026	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686	47	0	0	24	10	29.41	-	-	-	T	22890903	C	T	22890903	2	4	693	1	0	0	0	0	0	0	0	1	12501	697	25	4		4	PRAME	22	22890903	Silent	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09		22890903	28413663	93	60791										
ADORA2A	0	genome.wustl.edu	37	chr22	24837011	24837011	+	Missense_Mutation	SNP	G	G	T													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	tctgccccgactgcagccacGcccctctctggctcatgtac							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	22	24837011	24837011	G	T	SNP	ADORA2A	ENST00000337539	human	ensembl	69_37n	1	known	missense	c.793	p.A265S	0.990	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271	63	0	0	18	21	53.85	-	-	-	T	24837011	G	T	24837011	3	4	693	1	0	0	0	0	1	0	0	0	327	1087	38	3	799	3	ADORA2A	22	24837011	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	1946108	24837011	26467555	94	60792	452	2								
ADORA2A	0	genome.wustl.edu	37	chr22	24837012	24837012	+	Missense_Mutation	SNP	C	C	T													0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	ctgccccgactgcagccacgCccctctctggctcatgtacc							TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	22	24837012	24837012	C	T	SNP	ADORA2A	ENST00000337539	human	ensembl	69_37n	1	known	missense	c.794	p.A265V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adeno_A2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271	62	0	0	18	21	53.85	-	-	-	T	24837012	C	T	24837012	3	4	693	1	0	0	0	0	1	0	0	0	327	739	26	4	800	4	ADORA2A	22	24837012	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	1	24837012	26467554	95	60793	452	2								
ZBED4	0	genome.wustl.edu	37	chr22	50279223	50279223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gggcacagaattatcaggcgCttcctcttttgatgacacca	9	11	2	3			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	22	50279223	50279223	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.1913	p.A638V	0.009	NULL	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	37	0	0	20	19	47.5	-	-	-	T	50279223	C	T	50279223	3	4	693	1	0	0	0	0	1	0	0	0	17616	797	28	4	1915	4	ZBED4	22	50279223	Missense_Mutation	SNP	C	TCGA-D8-A1JP-01A-11D-A13L-09	25442211	50279223	1025343	96	60794										
STARD8	0	genome.wustl.edu	37	chrX	67941499	67941499	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gacattgcctctgccgaggaAaaccagatgacagcaggcaa	11	11	1	2			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	X	67941499	67941499	A	C	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	missense	c.2370	p.E790D	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	81	0	0	21	25	54.35	-	-	-	C	67941499	A	C	67941499	3	2	693	1	0	0	0	0	1	0	0	0	15354	11	1	5	2408	5	STARD8	23	67941499	Missense_Mutation	SNP	A	TCGA-D8-A1JP-01A-11D-A13L-09		67941499	87329061	97	60795										
TBC1D8B	0	genome.wustl.edu	37	chrX	106066568	106066568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	gagaatcactacttttcaatGtttttgcacattaaccaaac	4	9	2	1			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	X	106066568	106066568	G	A	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	1	known	missense	c.699	p.M233I	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	46	0	0	55	12	17.65	-	-	-	A	106066568	G	A	106066568	3	1	693	1	0	0	0	0	1	0	0	0	15721	1377	48	4	717	4	TBC1D8B	23	106066568	Missense_Mutation	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	38125069	106066568	49203992	98	60796										
GABRA3	0	genome.wustl.edu	37	chrX	151514123	151514123	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.114583333333333	11	0.0703049129887794	2.00896006100467	2.51388585173846	1.61879013180128	1	1	0	aagattctggtgaagatagtGatgttgtcagtgctgtcatc	12	5	3	4			TCGA-D8-A1JP-01A-11D-A13L-09	TCGA-D8-A1JP-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e21a355-0cb6-4a43-b134-50ff88dacf92	6eeba22a-d922-4fc8-abc1-ae8bc9eee928	X	151514123	151514123	G	T	SNP	GABRA3	ENST00000370311	human	ensembl	69_37n	-1	known	silent	c.192	p.I64	1.000	tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677	59	0	0	47	27	36.49	-	-	-	T	151514123	G	T	151514123	2	4	693	1	0	0	0	0	0	0	0	1	6211	1280	45	2		2	GABRA3	23	151514123	Silent	SNP	G	TCGA-D8-A1JP-01A-11D-A13L-09	45447555	151514123	3756437	99	60797										
SARS	0	genome.wustl.edu	37	chr1	109774392	109774392	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	ggcacagctcagccagtttgAtgaagaactttataaggtga	11	7	1	4			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	1	109774392	109774392	A	T	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	missense	c.731	p.D244V	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	95	0	0	45	32	41.56	-	-	-	T	109774392	A	T	109774392	3	4	694	1	0	0	0	0	1	0	0	0	13931	333	12	5	753	5	SARS	1	109774392	Missense_Mutation	SNP	A	TCGA-D8-A1JS-01A-11D-A13L-09		109774392	139476229	1	60798										
TRIM17	0	genome.wustl.edu	37	chr1	228596888	228596888	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	cttacctagaaagcctcttaGcacttcaatctgtccgggaa	7	12	3	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	1	228596888	228596888	G	C	SNP	TRIM17	ENST00000295033	human	ensembl	69_37n	-1	known	missense	c.868	p.L290V	0.998	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	69	0	0	33	38	52.78	-	-	-	C	228596888	G	C	228596888	3	2	694	1	0	0	0	0	1	0	0	0	16589	962	34	4	722	4	TRIM17	1	228596888	Missense_Mutation	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09	118822496	228596888	20653733	2	60799										
THUMPD3	0	genome.wustl.edu	37	chr3	9425945	9425945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	tttatccagcttgcctacggGagatgagccgtgtctgcaca	11	11	1	2			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	9425945	9425945	G	A	SNP	THUMPD3	ENST00000345094	human	ensembl	69_37n	1	known	missense	c.1285	p.E429K	1.000	pfam_RNA_methylase_dom	pfam_RNA_methylase_dom,pfam_THUMP,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD3	HGNC	ENSG00000134077	44	0	0	18	29	61.7	-	-	-	A	9425945	G	A	9425945	3	1	694	1	0	0	0	0	1	0	0	0	15979	1175	41	2	1315	2	THUMPD3	3	9425945	Missense_Mutation	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09		9425945	188596485	3	60800										
PIK3CA	0	genome.wustl.edu	37	chr3	178921548	178921548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	aaattctttgtgcaacctacGtgaatgtaaatattcgagac	7	7	1	2			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	178921548	178921548	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1030	p.V344M	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0	16	16	50	-	-	-	A	178921548	G	A	178921548	3	1	694	1	0	0	0	0	1	0	0	0	11987	1145	40	1	1044	1	PIK3CA	3	178921548	Missense_Mutation	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09	169495603	178921548	19100882	4	60801										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0	31	36	53.73	-	-	-	G	178952085	A	G	178952085	3	3	694	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A1JS-01A-11D-A13L-09	30537	178952085	19070345	5	60802										
PCGF3	0	genome.wustl.edu	37	chr4	728744	728744	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	caggagctgcctggtgaagtAcctggaggagaacaacacct	13	10	0	2			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	728744	728744	A	T	SNP	PCGF3	ENST00000362003	human	ensembl	69_37n	1	known	missense	c.134	p.Y45F	0.999	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619	31	0	0	16	12	40	-	-	-	T	728744	A	T	728744	3	4	694	1	0	0	0	0	1	0	0	0	11649	391	14	5	140	5	PCGF3	4	728744	Missense_Mutation	SNP	A	TCGA-D8-A1JS-01A-11D-A13L-09		728744	190425532	6	60803										
MRPS18C	0	genome.wustl.edu	37	chr4	84377236	84377236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	aagaaacgcggaaccatggcCgctgtggttgctgtttgcgg	15	9	0	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	84377236	84377236	C	T	SNP	MRPS18C	ENST00000509970	human	ensembl	69_37n	1	putative	missense	c.1	p.R1C	0.000	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPS18C	HGNC	ENSG00000163319	87	0	0	48	34	41.46	-	-	-	T	84377236	C	T	84377236	3	4	694	1	0	0	0	0	1	0	0	0	9902	639	23	1	8	1	MRPS18C	4	84377236	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09	83648492	84377236	106777040	7	60804										
INTS12	0	genome.wustl.edu	37	chr4	106604454	106604454	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	acgctggcactagaagaattTcctgaaataactgtggatgt	10	7	0	3			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	106604454	106604454	T	A	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	silent	c.825	p.G275	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	38	0	0	5	11	68.75	-	-	-	A	106604454	T	A	106604454	2	1	694	1	0	0	0	0	0	0	0	1	7831	1770	62	5		5	INTS12	4	106604454	Silent	SNP	T	TCGA-D8-A1JS-01A-11D-A13L-09	22227218	106604454	84549822	8	60805										
LOXL2	0	genome.wustl.edu	37	chr8	23174487	23174487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	gagcaggcaactccggccccGtactgcactccgccctgggg	13	17	0	0			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	8	23174487	23174487	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	silent	c.1611	p.Y537	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	43	0	0	14	15	51.72	-	-	-	A	23174487	G	A	23174487	2	1	694	1	0	0	0	0	0	0	0	1	8966	1140	40	1		1	LOXL2	8	23174487	Silent	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09		23174487	123189535	9	60806										
TGS1	0	genome.wustl.edu	37	chr8	56698879	56698879	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	agatgaaattgtgcaagaatCttggagaaaagaatatgaag	11	2	1	6			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	8	56698879	56698879	C	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.422	p.S141Y	0.587	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	68	0	0	16	18	52.94	-	-	-	A	56698879	C	A	56698879	3	1	694	1	0	0	0	0	1	0	0	0	15932	913	32	2	436	2	TGS1	8	56698879	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09	33524392	56698879	89665143	10	60807										
RIC8A	0	genome.wustl.edu	37	chr11	208907	208908	+	Frame_Shift_Del	DEL	TT	TT	-													0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	gacgggtgaggaggatgtgaTtatggaagctctgcggtcat							TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	11	208907	208908	TT	-	DEL	RIC8A	ENST00000325207	human	ensembl	69_37n	1	known	frame_shift_del	c.53_54	p.I18fs	0.009:0.009	NULL	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	9	0	0	4	2	33.33	-	-	-	-	208908	TT	-	208907	7	5	694	1	0	1	0	1	0	0	0	0	13439	1493	52	0	55	0	RIC8A	11	208907	Frame_Shift_Del	DEL	TT	TCGA-D8-A1JS-01A-11D-A13L-09		208907	134797609	11	60808										
RPUSD4	0	genome.wustl.edu	37	chr11	126075478	126075478	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	actttcaccattttcccatcGtccatgcggtagctcgggga	9	13	1	0			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	11	126075478	126075478	G	A	SNP	RPUSD4	ENST00000298317	human	ensembl	69_37n	-1	known	silent	c.681	p.D227	0.493	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526	82	0	0	43	31	41.89	-	-	-	A	126075478	G	A	126075478	2	1	694	1	0	0	0	0	0	0	0	1	13755	1136	40	1		1	RPUSD4	11	126075478	Silent	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09	125866571	126075478	8931038	12	60809										
SOS2	0	genome.wustl.edu	37	chr14	50623747	50623747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	ctggttggacatattccttgCgaaatcttttaaggtctgca	9	8	2	0			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	14	50623747	50623747	C	T	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	missense	c.2027	p.R676H	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	126	0	0	54	33	37.93	-	-	-	T	50623747	C	T	50623747	3	4	694	1	0	0	0	0	1	0	0	0	15026	768	27	1	2019	1	SOS2	14	50623747	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09		50623747	56725793	13	60810										
CCDC43	0	genome.wustl.edu	37	chr17	42766938	42766938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	caggaaagcagagaggatccCctgcagagcgtccagcttct	12	12	1	2			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	17	42766938	42766938	C	T	SNP	CCDC43	ENST00000315286	human	ensembl	69_37n	-1	known	missense	c.184	p.G62R	1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329	53	0	0	22	14	38.89	-	-	-	T	42766938	C	T	42766938	3	4	694	1	0	0	0	0	1	0	0	0	2842	623	22	4	510	4	CCDC43	17	42766938	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09		42766938	38428272	14	60811										
C18orf1	0	genome.wustl.edu	37	chr18	13438301	13438301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	cttggttcgctggtctgtaaCcaacagaacgactgtgggga	13	9	1	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	18	13438301	13438301	C	A	SNP	C18orf1	ENST00000359446	human	ensembl	69_37n	1	known	missense	c.99	p.N33K	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	C18orf1	HGNC	ENSG00000168675	70	0	0	42	40	48.78	-	-	-	A	13438301	C	A	13438301	3	1	694	1	0	0	0	0	1	0	0	0	1911	506	18	4	105	4	C18orf1	18	13438301	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09		13438301	64638947	15	60812										
CACNA1A	0	genome.wustl.edu	37	chr19	13370458	13370458	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	tcgtaatggaattcatacttCttccactcccggtctcgcgc	7	14	3	0			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	19	13370458	13370458	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	silent	c.4308	p.K1436	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	81	0	0	59	36	37.89	-	-	-	T	13370458	C	T	13370458	2	4	694	1	0	0	0	0	0	0	0	1	2563	912	32	2		2	CACNA1A	19	13370458	Silent	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09		13370458	45758525	16	60813										
E2F1	0	genome.wustl.edu	37	chr20	32265318	32265318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	tgcagggtctgcaatgctacGaaggtcctgacacgtcacgt	12	11	2	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	20	32265318	32265318	G	A	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	missense	c.754	p.R252C	0.741	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	53	0	0	42	26	38.24	-	-	-	A	32265318	G	A	32265318	3	1	694	1	0	0	0	0	1	0	0	0	4901	1058	37	1	571	1	E2F1	20	32265318	Missense_Mutation	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09		32265318	30760202	17	60814										
ITGB2	0	genome.wustl.edu	37	chr21	46309941	46309941	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	gcgctcacagttgatggtgtCacactcgcagtactgcccgt	11	13	2	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	21	46309941	46309941	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1609	p.D537N	0.998	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	30	0	0	21	18	46.15	-	-	-	T	46309941	C	T	46309941	3	4	694	1	0	0	0	0	1	0	0	0	7948	826	29	2	720	2	ITGB2	21	46309941	Missense_Mutation	SNP	C	TCGA-D8-A1JS-01A-11D-A13L-09		46309941	1819954	18	60815										
SH3KBP1	0	genome.wustl.edu	37	chrX	19764522	19764522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	ggggcttttctggagctttgTtggtgagagggtctttcttc	15	6	3	1			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	X	19764522	19764522	T	C	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.200	p.N67S	0.998	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	217	0	0	97	76	43.68	-	-	-	C	19764522	T	C	19764522	3	2	694	1	0	0	0	0	1	0	0	0	14344	1725	60	5	1877	5	SH3KBP1	23	19764522	Missense_Mutation	SNP	T	TCGA-D8-A1JS-01A-11D-A13L-09		19764522	135506038	19	60816										
KIF4A	0	genome.wustl.edu	37	chrX	69521827	69521827	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.839477553905388	1.23899371069182	0	1.3516295025729	0.4	0.991179622791967	0	gaacagggcaacaactctagGactgtggcctccacggctat	11	12	1	0			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	X	69521827	69521827	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	silent	c.594	p.R198	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	148	0	0	63	46	42.2	-	-	-	A	69521827	G	A	69521827	2	1	694	1	0	0	0	0	0	0	0	1	8355	1165	41	2		2	KIF4A	23	69521827	Silent	SNP	G	TCGA-D8-A1JS-01A-11D-A13L-09	49757305	69521827	85748733	20	60817										
LGR6	0	genome.wustl.edu	37	chr1	202249911	202249911	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctttccttcccgtgcaggcAtttgcataacaaccgcatcc	6	15	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	1	202249911	202249911	A	T	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	missense	c.647	p.H216L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	65	0	0	65	143	68.75	-	-	-	T	202249911	A	T	202249911	3	4	695	1	0	0	0	0	1	0	0	0	8813	217	8	5	816	5	LGR6	1	202249911	Missense_Mutation	SNP	A	TCGA-D8-A1JT-01A-31D-A13L-09		202249911	47000710	1	60818										
RYR2	0	genome.wustl.edu	37	chr1	237608772	237608772	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcccagcatgaagaatcacgCacagcccgagttatccggag	10	13	1	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	1	237608772	237608772	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.1236	p.R412	0.566	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	113	0	0	221	36	14.01	-	-	-	G	237608772	C	G	237608772	2	3	695	1	0	0	0	0	0	0	0	1	13855	697	25	4		4	RYR2	1	237608772	Silent	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	35358861	237608772	11641849	2	60819										
CRIM1	0	genome.wustl.edu	37	chr2	36583699	36583699	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggaacctgcgaccgggggctGcgttgtgtcatccgcccccc	14	16	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	2	36583699	36583699	G	C	SNP	CRIM1	ENST00000428774	human	ensembl	69_37n	1	putative	missense	c.86	p.C29S	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	CRIM1	HGNC	ENSG00000150938	12	0	0	5	4	44.44	-	-	-	C	36583699	G	C	36583699	3	2	695	1	0	0	0	0	1	0	0	0	3903	1306	46	4	266	4	CRIM1	2	36583699	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		36583699	206615674	3	60820										
KALRN	0	genome.wustl.edu	37	chr3	124438238	124438238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctagcatgcttcatagaacGtcgcaagcaccagaatgatg	9	11	1	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	3	124438238	124438238	G	A	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	1	known	missense	c.8882	p.R2961H	1.000	superfamily_Kinase-like_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	19	0	0	5	7	58.33	-	-	-	A	124438238	G	A	124438238	3	1	695	1	0	0	0	0	1	0	0	0	8029	1145	40	1	9276	1	KALRN	3	124438238	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		124438238	73584192	4	60821										
ADAM29	0	genome.wustl.edu	37	chr4	175897708	175897708	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgggcatgaaccatgatgaGgatacatgtcgttgttcaca	11	7	1	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	4	175897708	175897708	G	A	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	silent	c.1032	p.E344	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	38	0	0	31	60	65.93	-	-	-	A	175897708	G	A	175897708	2	1	695	1	0	0	0	0	0	0	0	1	247	991	35	4		4	ADAM29	4	175897708	Silent	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		175897708	15256568	5	60822										
PLK2	0	genome.wustl.edu	37	chr5	57750566	57750568	+	In_Frame_Del	DEL	GAT	GAT	-													0	0	1	0	0	0	1	1	0	tattcttcattttggctacaGatgatgatttttgtatgatc							TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	57750566	57750568	GAT	-	DEL	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	in_frame_del	c.1902_1900	p.I634in_frame_del	1.000:1.000:1.000	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	91	0	0	150	31	17.03	-	-	-	-	57750568	GAT	-	57750566	7	5	695	1	0	1	0	1	0	0	0	0	12170	932	33	0	159	0	PLK2	5	57750566	In_Frame_Del	DEL	GAT	TCGA-D8-A1JT-01A-31D-A13L-09		57750566	123164694	6	60823										
FAM174A	0	genome.wustl.edu	37	chr5	99871633	99871633	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtgttgatggtggtgagcggCgcggtgctggtgtacttcgt	19	6	0	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	99871633	99871633	C	G	SNP	FAM174A	ENST00000312637	human	ensembl	69_37n	1	known	silent	c.399	p.G133	1.000	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174A	HGNC	ENSG00000174132	14	0	0	9	12	57.14	-	-	-	G	99871633	C	G	99871633	2	3	695	1	0	0	0	0	0	0	0	1	5535	755	27	3		3	FAM174A	5	99871633	Silent	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	42121067	99871633	81043627	7	60824										
PCDHGB7	0	genome.wustl.edu	37	chr5	140798223	140798223	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccatcctgagagtgaaggCcactgaccaggacgagggca	13	12	0	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	140798223	140798223	C	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.797	p.A266D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	29	0	0	19	4	17.39	-	-	-	A	140798223	C	A	140798223	3	1	695	1	0	0	0	0	1	0	0	0	11641	739	26	4	799	4	PCDHGB7	5	140798223	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	40926590	140798223	40117037	8	60825										
WBSCR17	0	genome.wustl.edu	37	chr7	71142235	71142235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagacgtctgcttggaccagGggccgctggagaaccacaca	13	12	1	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	71142235	71142235	G	A	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.1444	p.G482R	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	61	0	0	46	38	45.24	-	-	-	A	71142235	G	A	71142235	3	1	695	1	0	0	0	0	1	0	0	0	17361	1232	43	4	1478	4	WBSCR17	7	71142235	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		71142235	87996428	9	60826										
RNF148	0	genome.wustl.edu	37	chr7	122342439	122342439	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgatcaccccatttgctccCttctctgctgccacgttgat	6	15	2	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	122342439	122342439	C	A	SNP	RNF148	ENST00000434824	human	ensembl	69_37n	-1	known	missense	c.366	p.K122N	0.997	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	56	0	0	50	32	39.02	-	-	-	A	122342439	C	A	122342439	3	1	695	1	0	0	0	0	1	0	0	0	13535	680	24	4	555	4	RNF148	7	122342439	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	51200204	122342439	36796224	10	60827										
MLL3	0	genome.wustl.edu	37	chr7	151843775	151843776	+	Frame_Shift_Del	DEL	TT	TT	-													0	0	1	0	0	0	1	1	0	aaagctggagcatttcagacTtttttctcacacatgccaca							TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	151843775	151843776	TT	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.14111_14110	p.K4704fs	0.004:0.003	pfam_FYrich_C,smart_FYrich_C	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	41	0	0	27	23	46	-	-	-	-	151843776	TT	-	151843775	7	5	695	1	0	1	0	1	0	0	0	0	9693	1609	56	0	823	0	MLL3	7	151843775	Frame_Shift_Del	DEL	TT	TCGA-D8-A1JT-01A-31D-A13L-09	29501336	151843775	7294888	11	60828										
VCPIP1	0	genome.wustl.edu	37	chr8	67578573	67578573	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccacatgcactggaatgagAcattcctggcttttattggc	9	10	0	1			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	8	67578573	67578573	A	C	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.621	p.C207W	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	34	0	0	65	15	18.75	-	-	-	C	67578573	A	C	67578573	3	2	695	1	0	0	0	0	1	0	0	0	17238	273	10	5	3059	5	VCPIP1	8	67578573	Missense_Mutation	SNP	A	TCGA-D8-A1JT-01A-31D-A13L-09		67578573	78785449	12	60829										
IFT74	0	genome.wustl.edu	37	chr9	26988692	26988692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agataaacttaataccaacaCtgaaatggaagaagtaatga	7	5	0	4			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	26988692	26988692	C	T	SNP	IFT74	ENST00000380062	human	ensembl	69_37n	1	known	missense	c.491	p.T164I	1.000	NULL	NULL	-	no_errors	IFT74	HGNC	ENSG00000096872	17	0	0	24	18	42.86	-	-	-	T	26988692	C	T	26988692	3	4	695	1	0	0	0	0	1	0	0	0	7617	565	20	4	513	4	IFT74	9	26988692	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09		26988692	114224739	13	60830										
PSMD5	0	genome.wustl.edu	37	chr9	123593673	123593673	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttcaaatcatccagcagaTtgctttcaaataaagcctcc	4	11	3	1			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	123593673	123593673	T	C	SNP	PSMD5	ENST00000210313	human	ensembl	69_37n	-1	known	missense	c.497	p.N166S	1.000	pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold	pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold	-	no_errors	PSMD5	HGNC	ENSG00000095261	74	0	0	112	55	32.93	-	-	-	C	123593673	T	C	123593673	3	2	695	1	0	0	0	0	1	0	0	0	12781	1493	52	5	1045	5	PSMD5	9	123593673	Missense_Mutation	SNP	T	TCGA-D8-A1JT-01A-31D-A13L-09	96604981	123593673	17619758	14	60831										
GATA3	0	genome.wustl.edu	37	chr10	8115711	8115711	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	tctttgtttagattaacagaCccctgactatgaagaaggaa							TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	10	8115711	8115711	C	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1060	p.L355fs	1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	34	0	0	26	13	32.5	-	-	-	-	8115711	C	-	8115711	7	5	695	1	0	1	0	1	0	0	0	0	6305	507	18	0	1078	0	GATA3	10	8115711	Frame_Shift_Del	DEL	C	TCGA-D8-A1JT-01A-31D-A13L-09		8115711	127419036	15	60832										
CASP4	0	genome.wustl.edu	37	chr11	104825700	104825700	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgcccagggattccaacacCttaagtggcttttttctgtg	9	10	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	11	104825700	104825700	C	G	SNP	CASP4	ENST00000444739	human	ensembl	69_37n	-1	known	missense	c.36	p.K12N	0.009	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954	56	0	0	40	31	43.66	-	-	-	G	104825700	C	G	104825700	3	3	695	1	0	0	0	0	1	0	0	0	2698	680	24	4	1125	4	CASP4	11	104825700	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09		104825700	30180816	16	60833										
OR8S1	0	genome.wustl.edu	37	chr12	48919779	48919779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcagggatggcctatgaccGccatgctgccatctgccgcc	11	16	2	1			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	12	48919779	48919779	G	A	SNP	OR8S1	ENST00000310194	human	ensembl	69_37n	1	known	missense	c.365	p.R122H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376	91	0	0	94	33	25.98	-	-	-	A	48919779	G	A	48919779	3	1	695	1	0	0	0	0	1	0	0	0	11319	1087	38	1	367	1	OR8S1	12	48919779	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		48919779	84932116	17	60834										
DHX37	0	genome.wustl.edu	37	chr12	125448967	125448967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agtggccgggctccgtccgtCctgctctgcccgctcgctgg	14	17	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	12	125448967	125448967	C	T	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.2018	p.G673E	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	41	0	0	22	17	43.59	-	-	-	T	125448967	C	T	125448967	3	4	695	1	0	0	0	0	1	0	0	0	4546	855	30	2	1507	2	DHX37	12	125448967	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	76529188	125448967	8402928	18	60835										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20237220	20237220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tattcttttggaagcaggagCttttgtaaatgtccagcaaa	9	6	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	13	20237220	20237220	C	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.1973	p.A658V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	94	0	0	55	11	15.94	-	-	-	T	20237220	C	T	20237220	3	4	695	1	0	0	0	0	1	0	0	0	9799	797	28	4	2007	4	MPHOSPH8	13	20237220	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09		20237220	94932658	19	60836										
TPP2	0	genome.wustl.edu	37	chr13	103301465	103301465	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacattaccacccaaatataAccagccattctttgttactt	3	12	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	13	103301465	103301465	A	C	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.2837	p.N946T	0.998	pfam_Peptidase_S8A_TPPII	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	34	0	0	21	11	34.38	-	-	-	C	103301465	A	C	103301465	3	2	695	1	0	0	0	0	1	0	0	0	16508	43	2	5	2923	5	TPP2	13	103301465	Missense_Mutation	SNP	A	TCGA-D8-A1JT-01A-31D-A13L-09	83064245	103301465	11868413	20	60837										
NOVA1	0	genome.wustl.edu	37	chr14	26939694	26939694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatatccaggagatattatgCttctttgtacaagaacagaa	8	6	1	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	14	26939694	26939694	C	T	SNP	NOVA1	ENST00000344429	human	ensembl	69_37n	-1	known	silent	c.522	p.K174	0.001	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910	137	0	0	139	43	23.63	-	-	-	T	26939694	C	T	26939694	2	4	695	1	0	0	0	0	0	0	0	1	10626	796	28	4		4	NOVA1	14	26939694	Silent	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09		26939694	80409846	21	60838										
ZNF609	0	genome.wustl.edu	37	chr15	64915230	64915230	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgtcaaccttgaaggcatcGtgtggcaggaaacagaagat	13	8	1	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	15	64915230	64915230	G	C	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	missense	c.952	p.V318L	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	47	0	0	38	15	28.3	-	-	-	C	64915230	G	C	64915230	3	2	695	1	0	0	0	0	1	0	0	0	18131	1145	40	3	958	3	ZNF609	15	64915230	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		64915230	37616162	22	60839										
IREB2	0	genome.wustl.edu	37	chr15	78775776	78775776	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggcttgcttaaatgaaaaGgtaggttactttattcttat	8	5	1	1			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	15	78775776	78775776	G	A	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	silent	c.1413	p.K471	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	87	0	0	59	34	36.17	-	-	-	A	78775776	G	A	78775776	2	1	695	1	0	0	0	0	0	0	0	1	7880	1014	35	4		4	IREB2	15	78775776	Silent	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09	13860546	78775776	23755616	23	60840										
ALDOC	0	genome.wustl.edu	37	chr17	26901258	26901258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccttgtacacagcagccaagAcctgggtggggattagagga	14	9	0	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	26901258	26901258	A	G	SNP	ALDOC	ENST00000226253	human	ensembl	69_37n	-1	known	missense	c.626	p.V209A	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107	27	0	0	42	19	31.15	-	-	-	G	26901258	A	G	26901258	3	3	695	1	0	0	0	0	1	0	0	0	509	289	10	5	480	5	ALDOC	17	26901258	Missense_Mutation	SNP	A	TCGA-D8-A1JT-01A-31D-A13L-09		26901258	54293952	24	60841										
NEK8	0	genome.wustl.edu	37	chr17	27064381	27064381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctttgcacctatctctgacCggtacagccctgagcttcgc	8	16	1	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	27064381	27064381	C	T	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.676	p.R226W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	42	0	0	44	12	21.43	-	-	-	T	27064381	C	T	27064381	3	4	695	1	0	0	0	0	1	0	0	0	10402	643	23	1	694	1	NEK8	17	27064381	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09	163123	27064381	54130829	25	60842										
DCAF7	0	genome.wustl.edu	37	chr17	61662631	61662631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cgccaggttaaacaaccatcGagcatgtgtcaatggcattg	10	10	1	0			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	61662631	61662631	G	A	SNP	DCAF7	ENST00000310827	human	ensembl	69_37n	1	known	missense	c.797	p.R266Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485	61	0	0	76	27	26.21	-	-	-	A	61662631	G	A	61662631	3	1	695	1	0	0	0	0	1	0	0	0	4307	1058	37	1	820	1	DCAF7	17	61662631	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09	34598250	61662631	19532579	26	60843										
MUC16	0	genome.wustl.edu	37	chr19	9085003	9085003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaatggttctaaatgaatgaGttgtcttttctgggaaatgt	10	3	3	2			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	19	9085003	9085003	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.6812	p.T2271I	0.026	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	51	0	0	44	21	32.31	-	-	-	A	9085003	G	A	9085003	3	1	695	1	0	0	0	0	1	0	0	0	10045	1029	36	4	37047	4	MUC16	19	9085003	Missense_Mutation	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		9085003	50043980	27	60844										
TRPM4	0	genome.wustl.edu	37	chr19	49700060	49700061	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	tgagccagcgcctgcgcctcINStacctcgccgacagctggaa							TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	19	49700060	49700061	-	T	INS	TRPM4	ENST00000252826	human	ensembl	69_37n	1	known	frame_shift_ins	c.2574_2575	p.Y858fs	0.967:1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	16	0	0	6	3	33.33	-	-	-	T	49700061	-	T	49700060	7	5	695	1	0	1	1	0	0	0	0	0	16684	900	32	0	2640	0	TRPM4	19	49700060	Frame_Shift_Ins	INS	-	TCGA-D8-A1JT-01A-31D-A13L-09	40615057	49700060	9428923	28	60845										
TFF2	0	genome.wustl.edu	37	chr21	43767728	43767728	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggtctgagacctccatgacGcactgatccgactctgccat	9	15	2	3			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	21	43767728	43767728	G	A	SNP	TFF2	ENST00000291526	human	ensembl	69_37n	-1	known	silent	c.243	p.C81	0.632	pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil	pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,prints_P_trefoil_chordata	-	no_errors	TFF2	HGNC	ENSG00000160181	31	0	0	19	12	38.71	-	-	-	A	43767728	G	A	43767728	2	1	695	1	0	0	0	0	0	0	0	1	15899	1079	38	1		1	TFF2	21	43767728	Silent	SNP	G	TCGA-D8-A1JT-01A-31D-A13L-09		43767728	4362167	29	60846										
POU3F4	0	genome.wustl.edu	37	chrX	82764246	82764246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caagtgtcccaagcctgccgCgcaggagatctcctcgctgg	12	15	1	1			TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	X	82764246	82764246	C	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	1	known	missense	c.914	p.A305V	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	27	0	0	17	8	32	-	-	-	T	82764246	C	T	82764246	3	4	695	1	0	0	0	0	1	0	0	0	12350	768	27	1	916	1	POU3F4	23	82764246	Missense_Mutation	SNP	C	TCGA-D8-A1JT-01A-31D-A13L-09		82764246	72506314	30	60847										
LAX1	0	genome.wustl.edu	37	chr1	203743056	203743056	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	acagcccacatccatgccacAgagtacgcggtgggtatcta	10	13	1	1			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	1	203743056	203743056	A	T	SNP	LAX1	ENST00000442561	human	ensembl	69_37n	1	known	silent	c.444	p.T148	0.000	NULL	NULL	-	no_errors	LAX1	HGNC	ENSG00000122188	27	0	0	24	14	36.84	-	-	-	T	203743056	A	T	203743056	2	4	696	1	0	0	0	0	0	0	0	1	8702	175	7	5		5	LAX1	1	203743056	Silent	SNP	A	TCGA-D8-A1JU-01A-11D-A13L-09		203743056	45507565	1	60848										
APOB	0	genome.wustl.edu	37	chr2	21233395	21233395	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	gcttgctgtgggagttttccCagggctgctctgtattttct	12	9	2	0			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	2	21233395	21233395	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.6345	p.L2115	0.025	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	66	0	0	56	15	21.13	-	-	-	T	21233395	C	T	21233395	2	4	696	1	0	0	0	0	0	0	0	1	787	581	21	4		4	APOB	2	21233395	Silent	SNP	C	TCGA-D8-A1JU-01A-11D-A13L-09		21233395	221965978	2	60849										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0	43	7	14	-	-	-	G	178952085	A	G	178952085	3	3	696	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A1JU-01A-11D-A13L-09		178952085	19070345	3	60850										
MAP3K13	0	genome.wustl.edu	37	chr3	185146386	185146386	+	Frame_Shift_Del	DEL	A	A	-													0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	cacgatggccaactttcaggAgcacctgagctgctcctctt							TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	3	185146386	185146386	A	-	DEL	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	frame_shift_del	c.17	p.E6fs	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	16	0	0	4	2	33.33	-	-	-	-	185146386	A	-	185146386	7	5	696	1	0	1	0	1	0	0	0	0	9318	304	11	0	19	0	MAP3K13	3	185146386	Frame_Shift_Del	DEL	A	TCGA-D8-A1JU-01A-11D-A13L-09	6194301	185146386	12876044	4	60851										
COPS4	0	genome.wustl.edu	37	chr4	83971138	83971138	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	cctttggaaacaggacaaaaGtatagtaaatagtggatatt	9	4	0	0			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	4	83971138	83971138	G	A	SNP	COPS4	ENST00000264389	human	ensembl	69_37n	1	known	splice_site	c.410+1	e4+1	1.000	-	-	-	no_errors	COPS4	HGNC	ENSG00000138663	74	0	0	50	8	13.79	-	-	-	A	83971138	G	A	83971138	5	1	696	1	0	0	0	0	0	0	1	0	3765	1043	36	4	425	4	COPS4	4	83971138	Splice_Site	SNP	G	TCGA-D8-A1JU-01A-11D-A13L-09		83971138	107183138	5	60852										
MAP3K1	0	genome.wustl.edu	37	chr5	56155725	56155726	+	Frame_Shift_Del	DEL	AG	AG	-													0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	ctccaggagtaaggagaaaaAgagtttccccagtgcctgta							TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	5	56155725	56155726	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.817_818	p.R273fs	0.959:0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	24	0	0	20	7	25.93	-	-	-	-	56155726	AG	-	56155725	7	5	696	1	0	1	0	1	0	0	0	0	9314	64	3	0	827	0	MAP3K1	5	56155725	Frame_Shift_Del	DEL	AG	TCGA-D8-A1JU-01A-11D-A13L-09		56155725	124759535	6	60853										
PCDHGA9	0	genome.wustl.edu	37	chr5	140784341	140784341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	atgcttggctctcctaccgcCtattcaaggccagtgagcca	9	14	2	1			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	5	140784341	140784341	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	silent	c.1822	p.L608	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	21	0	0	12	11	47.83	-	-	-	T	140784341	C	T	140784341	2	4	696	1	0	0	0	0	0	0	0	1	11634	680	24	4		4	PCDHGA9	5	140784341	Silent	SNP	C	TCGA-D8-A1JU-01A-11D-A13L-09	84628616	140784341	40130919	7	60854										
TNFRSF11B	0	genome.wustl.edu	37	chr8	119936777	119936777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	cgtctttgagtgctttagtgCgtgcattaggcccttcaagg	12	9	2	1			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	8	119936777	119936777	C	T	SNP	TNFRSF11B	ENST00000297350	human	ensembl	69_37n	-1	known	missense	c.1042	p.A348T	0.569	pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	60	0	0	95	32	25.2	-	-	-	T	119936777	C	T	119936777	3	4	696	1	0	0	0	0	1	0	0	0	16380	768	27	1	167	1	TNFRSF11B	8	119936777	Missense_Mutation	SNP	C	TCGA-D8-A1JU-01A-11D-A13L-09		119936777	26427245	8	60855										
SYT9	0	genome.wustl.edu	37	chr11	7324289	7324289	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	gatatctcagtgagcctgctGacccttgtggtcactgcctg	11	12	2	2			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	11	7324289	7324289	G	A	SNP	SYT9	ENST00000524820	human	ensembl	69_37n	1	known	missense	c.22	p.D8N	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT9	HGNC	ENSG00000170743	59	0	0	84	17	16.83	-	-	-	A	7324289	G	A	7324289	3	1	696	1	0	0	0	0	1	0	0	0	15573	1277	45	2	171	2	SYT9	11	7324289	Missense_Mutation	SNP	G	TCGA-D8-A1JU-01A-11D-A13L-09		7324289	127682227	9	60856										
MYCBP2	0	genome.wustl.edu	37	chr13	77748601	77748601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	cggcttccatagttcctcaaGcgcacagcatatttaacatt	6	12	1	0			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	13	77748601	77748601	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	silent	c.5496	p.R1832	0.980	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	56	0	0	59	17	22.37	-	-	-	A	77748601	G	A	77748601	2	1	696	1	0	0	0	0	0	0	0	1	10090	958	34	4		4	MYCBP2	13	77748601	Silent	SNP	G	TCGA-D8-A1JU-01A-11D-A13L-09		77748601	37421277	10	60857										
HS3ST4	0	genome.wustl.edu	37	chr16	26147094	26147094	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	cagggccatctctgactacaCgcagacactgtcaaagaaac	8	13	2	3			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	16	26147094	26147094	C	G	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	missense	c.896	p.T299R	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	34	0	0	33	9	21.43	-	-	-	G	26147094	C	G	26147094	3	3	696	1	0	0	0	0	1	0	0	0	7418	536	19	3	902	3	HS3ST4	16	26147094	Missense_Mutation	SNP	C	TCGA-D8-A1JU-01A-11D-A13L-09		26147094	64207659	11	60858										
FAM47B	0	genome.wustl.edu	37	chrX	34962644	34962644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	1	0.91716427812284	1.01020408163265	0	1.17857142857143	1	1	0	aaaagctaagaagtgatgaaCctttgattgaccccaagccc	8	10	0	5			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	X	34962644	34962644	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1696	p.P566T	0.382	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	48	0	0	46	12	20.69	-	-	-	A	34962644	C	A	34962644	3	1	696	1	0	0	0	0	1	0	0	0	5616	507	18	4	1698	4	FAM47B	23	34962644	Missense_Mutation	SNP	C	TCGA-D8-A1JU-01A-11D-A13L-09		34962644	120307916	12	60859										
BNIPL	0	genome.wustl.edu	37	chr1	151018589	151018589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ttctggacagcctgggggagCtggcccaactcatatccctg	12	13	2	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	1	151018589	151018589	C	A	SNP	BNIPL	ENST00000368931	human	ensembl	69_37n	1	known	missense	c.985	p.L329M	0.998	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	BNIPL	HGNC	ENSG00000163141	60	0	0	64	15	18.99	-	-	-	A	151018589	C	A	151018589	3	1	697	1	0	0	0	0	1	0	0	0	1485	796	28	4	1019	4	BNIPL	1	151018589	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		151018589	98232032	1	60860										
USH2A	0	genome.wustl.edu	37	chr1	216246478	216246479	+	Frame_Shift_Ins	INS	-	-	T													0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ccctcgtaaacactctgctcINSttttccctggtaaaccagga							TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	1	216246478	216246479	-	T	INS	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5737_5736	p.E1912fs	0.002:0.001	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	39	0	0	70	11	13.58	-	-	-	T	216246479	-	T	216246478	7	5	697	1	0	1	1	0	0	0	0	0	17133	922	32	0	10051	0	USH2A	1	216246478	Frame_Shift_Ins	INS	-	TCGA-D8-A1X5-01A-11D-A14G-09	65227889	216246478	33004143	2	60861										
ZP4	0	genome.wustl.edu	37	chr1	238051727	238051727	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gcctagcccttcacagtctcCtcgagagatgggtgaaggtg	13	11	2	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	1	238051727	238051727	C	A	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	nonsense	c.484	p.G162*	0.001	pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	44	0	0	73	11	13.1	-	-	-	A	238051727	C	A	238051727	4	1	697	1	0	0	0	0	0	1	0	0	18311	690	24	4	1174	4	ZP4	1	238051727	Nonsense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	21805249	238051727	11198894	3	60862										
FMN2	0	genome.wustl.edu	37	chr1	240256746	240256746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gagccccaggatcaagaggcGgccggaaccctccctgagcc	13	16	1	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	1	240256746	240256746	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.1337	p.R446Q	0.617	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	21	0	0	26	6	18.75	-	-	-	A	240256746	G	A	240256746	3	1	697	1	0	0	0	0	1	0	0	0	5996	1116	39	1	1339	1	FMN2	1	240256746	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	2205019	240256746	8993875	4	60863										
APOB	0	genome.wustl.edu	37	chr2	21234906	21234906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	tgatccagaaagcaggctgaAgaacctcaatgactcgtaat	9	9	1	5			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	21234906	21234906	A	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.4834	p.F1612L	0.247	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	17	0	0	39	12	23.53	-	-	-	G	21234906	A	G	21234906	3	3	697	1	0	0	0	0	1	0	0	0	787	72	3	5	8873	5	APOB	2	21234906	Missense_Mutation	SNP	A	TCGA-D8-A1X5-01A-11D-A14G-09		21234906	221964467	5	60864										
PLB1	0	genome.wustl.edu	37	chr2	28775833	28775833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	atcagatgtcctgacaaagaCccctccgatacggttcccac	7	15	1	3			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	28775833	28775833	C	T	SNP	PLB1	ENST00000404858	human	ensembl	69_37n	1	putative	missense	c.1151	p.T384I	0.046	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLB1	HGNC	ENSG00000163803	50	0	0	49	10	16.95	-	-	-	T	28775833	C	T	28775833	3	4	697	1	0	0	0	0	1	0	0	0	12098	506	18	4	1221	4	PLB1	2	28775833	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	7540927	28775833	214423540	6	60865										
SLC8A1	0	genome.wustl.edu	37	chr2	40656069	40656069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	cataatcagacccagcatttGctgtgccatcctctgttctg	7	13	3	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	40656069	40656069	G	T	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.1352	p.A451E	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	14	0	0	18	5	21.74	-	-	-	T	40656069	G	T	40656069	3	4	697	1	0	0	0	0	1	0	0	0	14795	1319	46	4	1717	4	SLC8A1	2	40656069	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	11880236	40656069	202543304	7	60866										
ZFP36L2	0	genome.wustl.edu	37	chr2	43453434	43453434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	aagtcgacatcgtagaaggcGgacagaagtgtggtcgacat	14	7	0	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	43453434	43453434	G	A	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	silent	c.21	p.S7	0.998	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	27	0	0	21	11	34.38	-	-	-	A	43453434	G	A	43453434	2	1	697	1	0	0	0	0	0	0	0	1	17743	1103	39	1		1	ZFP36L2	2	43453434	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	2797365	43453434	199745939	8	60867										
CNNM3	0	genome.wustl.edu	37	chr2	97498311	97498311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	tccagccacagcaggcccggCgtcccggtggaaggcagccc	14	17	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	97498311	97498311	C	T	SNP	CNNM3	ENST00000305510	human	ensembl	69_37n	1	known	silent	c.2082	p.G694	0.001	NULL	pfam_DUF21,superfamily_RNA_pol_subH/Rpb5_C,superfamily_cNMP-bd-like	-	no_errors	CNNM3	HGNC	ENSG00000168763	50	0	0	31	11	26.19	-	-	-	T	97498311	C	T	97498311	2	4	697	1	0	0	0	0	0	0	0	1	3644	755	27	1		1	CNNM3	2	97498311	Silent	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	54044877	97498311	145701062	9	60868										
EN1	0	genome.wustl.edu	37	chr2	119600587	119600587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	cctgggccatgaggtgcagcGccaggccgttcttgatgcct	14	13	1	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	119600587	119600587	G	A	SNP	EN1	ENST00000295206	human	ensembl	69_37n	-1	known	missense	c.1106	p.A369V	1.000	pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,prints_Homeodomain_engrailed	pfam_Homeodomain,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064	34	0	0	27	12	30.77	-	-	-	A	119600587	G	A	119600587	3	1	697	1	0	0	0	0	1	0	0	0	5146	1087	38	1	76	1	EN1	2	119600587	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	22102276	119600587	123598786	10	60869										
MAP2	0	genome.wustl.edu	37	chr2	210560612	210560612	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	agagtgaggaagaagagataGaagcccagggagaatatgat	15	3	0	7			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	2	210560612	210560612	G	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	nonsense	c.3718	p.E1240*	0.989	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	44	0	0	39	9	18.75	-	-	-	T	210560612	G	T	210560612	4	4	697	1	0	0	0	0	0	1	0	0	9306	943	33	2	3732	2	MAP2	2	210560612	Nonsense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	90960025	210560612	32638761	11	60870										
ANO10	0	genome.wustl.edu	37	chr3	43596874	43596874	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	agtgaagttatttaacacagCaaaggcagctgctaatgggt	11	6	0	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	3	43596874	43596874	C	A	SNP	ANO10	ENST00000292246	human	ensembl	69_37n	-1	known	missense	c.1564	p.A522S	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746	45	0	0	22	18	45	-	-	-	A	43596874	C	A	43596874	3	1	697	1	0	0	0	0	1	0	0	0	695	710	25	4	434	4	ANO10	3	43596874	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		43596874	154425556	12	60871										
LAMB2	0	genome.wustl.edu	37	chr3	49168209	49168209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	atggccgtcctcagccggacGccagggcaggtcacgataga	14	13	2	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	3	49168209	49168209	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.1000	p.R334C	0.996	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	43	0	0	35	11	23.4	-	-	-	A	49168209	G	A	49168209	3	1	697	1	0	0	0	0	1	0	0	0	8665	1087	38	1	4496	1	LAMB2	3	49168209	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	5571335	49168209	148854221	13	60872										
POC1A	0	genome.wustl.edu	37	chr3	52109949	52109949	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gctgctggttctccagacacTgcttcagcttgtcttctgtc	9	13	4	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	3	52109949	52109949	T	G	SNP	POC1A	ENST00000296484	human	ensembl	69_37n	-1	known	missense	c.1178	p.Q393P	1.000	NULL	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	POC1A	HGNC	ENSG00000164087	48	0	0	12	9	42.86	-	-	-	G	52109949	T	G	52109949	3	3	697	1	0	0	0	0	1	0	0	0	12249	1580	55	5	49	5	POC1A	3	52109949	Missense_Mutation	SNP	T	TCGA-D8-A1X5-01A-11D-A14G-09	2941740	52109949	145912481	14	60873										
FAM149A	0	genome.wustl.edu	37	chr4	187077211	187077211	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ggtaggaaatggcgcaaactCggacttcctcctgtttcccc	10	13	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	4	187077211	187077211	C	T	SNP	FAM149A	ENST00000356371	human	ensembl	69_37n	1	known	silent	c.1314	p.L438	0.035	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794	56	0	0	52	10	16.13	-	-	-	T	187077211	C	T	187077211	2	4	697	1	0	0	0	0	0	0	0	1	5495	871	31	1		1	FAM149A	4	187077211	Silent	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		187077211	4077065	15	60874										
C7	0	genome.wustl.edu	37	chr5	40959618	40959618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gtccaagggaagaaaacaagAagccgtgaatgcaataaccc	10	9	0	3			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	5	40959618	40959618	A	G	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	silent	c.1557	p.R519	0.229	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	52	0	0	26	31	54.39	-	-	-	G	40959618	A	G	40959618	2	3	697	1	0	0	0	0	0	0	0	1	2398	243	9	5		5	C7	5	40959618	Silent	SNP	A	TCGA-D8-A1X5-01A-11D-A14G-09		40959618	139955642	16	60875										
DSP	0	genome.wustl.edu	37	chr6	7582932	7582932	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ctcaggtggtacaggaaagaGagagccttctggtgaaaatc	13	7	2	3			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	7582932	7582932	G	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.5437	p.E1813Q	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	41	0	0	34	27	44.26	-	-	-	C	7582932	G	C	7582932	3	2	697	1	0	0	0	0	1	0	0	0	4816	943	33	2	5531	2	DSP	6	7582932	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		7582932	163532135	17	60876										
RNF182	0	genome.wustl.edu	37	chr6	13977923	13977923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ttagtgtggttgctaggtttGctctacttcagctccttacc	9	10	2	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	13977923	13977923	G	T	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.573	p.L191F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	90	0	0	105	34	24.46	-	-	-	T	13977923	G	T	13977923	3	4	697	1	0	0	0	0	1	0	0	0	13552	1310	46	4	575	4	RNF182	6	13977923	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	6394991	13977923	157137144	18	60877										
PGBD1	0	genome.wustl.edu	37	chr6	28269126	28269126	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	caatcagaagggacagatttGaattgattttctcaaacctg	8	7	2	4			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	28269126	28269126	G	A	SNP	PGBD1	ENST00000259883	human	ensembl	69_37n	1	known	missense	c.1495	p.E499K	1.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_Srcr_rcpt,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338	27	0	0	39	12	23.08	-	-	-	A	28269126	G	A	28269126	3	1	697	1	0	0	0	0	1	0	0	0	11854	1291	45	2	1517	2	PGBD1	6	28269126	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	14291203	28269126	142845941	19	60878										
PI16	0	genome.wustl.edu	37	chr6	36922584	36922584	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	cttctgctgccgctactgctActgctggtggccaccacagg	11	15	1	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	36922584	36922584	A	G	SNP	PI16	ENST00000373674	human	ensembl	69_37n	1	known	silent	c.48	p.L16	0.602	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	33	0	0	18	5	21.74	-	-	-	G	36922584	A	G	36922584	2	3	697	1	0	0	0	0	0	0	0	1	11943	378	14	5		5	PI16	6	36922584	Silent	SNP	A	TCGA-D8-A1X5-01A-11D-A14G-09	8653458	36922584	134192483	20	60879										
MYO6	0	genome.wustl.edu	37	chr6	76551053	76551054	+	Frame_Shift_Ins	INS	-	-	TA													0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gtgctggtgcttctgaagatINSattagagaaaaacttcattt							TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	76551053	76551054	-	TA	INS	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	frame_shift_ins	c.774_775	p.I258fs	0.991:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	63	0	0	89	17	16.04	-	-	-	TA	76551054	-	TA	76551053	7	5	697	1	0	1	1	0	0	0	0	0	10153	1403	49	0	804	0	MYO6	6	76551053	Frame_Shift_Ins	INS	-	TCGA-D8-A1X5-01A-11D-A14G-09	39628469	76551053	94564014	21	60880										
GRIK2	0	genome.wustl.edu	37	chr6	101847171	101847171	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	accatgaagattattttcccGattctaagtaatccagtctt	5	9	2	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	101847171	101847171	G	A	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	silent	c.18	p.P6	0.999	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	54	0	0	56	9	13.64	-	-	-	A	101847171	G	A	101847171	2	1	697	1	0	0	0	0	0	0	0	1	6825	1045	37	1		1	GRIK2	6	101847171	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	25296118	101847171	69267896	22	60881										
FYN	0	genome.wustl.edu	37	chr6	112015900	112015900	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ccatcttttaagaaatccagTaaacttcctatgaacaaaac	3	10	1	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	6	112015900	112015900	T	C	SNP	FYN	ENST00000354650	human	ensembl	69_37n	-1	known	silent	c.1050	p.L350	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FYN	HGNC	ENSG00000010810	43	0	0	31	23	42.59	-	-	-	C	112015900	T	C	112015900	2	2	697	1	0	0	0	0	0	0	0	1	6175	1635	57	5		5	FYN	6	112015900	Silent	SNP	T	TCGA-D8-A1X5-01A-11D-A14G-09	10168729	112015900	59099167	23	60882										
INMT	0	genome.wustl.edu	37	chr7	30795418	30795418	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ctactctgtcaccaatgctgCcaacaatggggtctgcttca	8	13	4	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	7	30795418	30795418	C	A	SNP	INMT	ENST00000013222	human	ensembl	69_37n	1	known	missense	c.743	p.A248D	0.045	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644	26	0	0	17	13	43.33	-	-	-	A	30795418	C	A	30795418	3	1	697	1	0	0	0	0	1	0	0	0	7799	739	26	4	753	4	INMT	7	30795418	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		30795418	128343245	24	60883										
RFC2	0	genome.wustl.edu	37	chr7	73651677	73651677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ggttcctctgccaggacgggGggaaggaggccaaccttgta	16	10	1	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	7	73651677	73651677	G	A	SNP	RFC2	ENST00000485545	human	ensembl	69_37n	-1	known	missense	c.232	p.P78S	0.000	NULL	superfamily_DNA_pol3_clamp-load_cplx_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RFC2	HGNC	ENSG00000049541	58	0	0	29	11	27.5	-	-	-	A	73651677	G	A	73651677	3	1	697	1	0	0	0	0	1	0	0	0	13328	1247	43	4		4	RFC2	7	73651677	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	42856259	73651677	85486986	25	60884										
ZAN	0	genome.wustl.edu	37	chr7	100385563	100385563	+	Frame_Shift_Del	DEL	C	C	-													0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	cgttacctcacatttgacggCttcagctaccgcttgcaagg							TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	7	100385563	100385563	C	-	DEL	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	frame_shift_del	c.7029	p.F2344fs	0.005	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	25	0	0	7	2	14.29	-	-	-	-	100385563	C	-	100385563	7	5	697	1	0	1	0	1	0	0	0	0	17610	784	28	0	7177	0	ZAN	7	100385563	Frame_Shift_Del	DEL	C	TCGA-D8-A1X5-01A-11D-A14G-09	26733886	100385563	58753100	26	60885										
CTTNBP2	0	genome.wustl.edu	37	chr7	117432213	117432213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	tggccatggtggcactggtgCacacgctcccttttgcattt	11	12	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	7	117432213	117432213	C	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.1037	p.C346F	0.026	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	35	0	0	20	8	28.57	-	-	-	A	117432213	C	A	117432213	3	1	697	1	0	0	0	0	1	0	0	0	4077	710	25	4	4034	4	CTTNBP2	7	117432213	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	17046650	117432213	41706450	27	60886										
COL22A1	0	genome.wustl.edu	37	chr8	139856380	139856380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	taaagcgatctccttctacaCgaacgctaggacagagcaca	8	12	2	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	8	139856380	139856380	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.680	p.R227H	0.042	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	69	0	0	102	21	17.07	-	-	-	T	139856380	C	T	139856380	3	4	697	1	0	0	0	0	1	0	0	0	3711	536	19	1	4448	1	COL22A1	8	139856380	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		139856380	6507642	28	60887										
KIAA2026	0	genome.wustl.edu	37	chr9	5988477	5988477	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ttgttgaggtacatgcagttCccttctcatcctccaatcca	6	13	1	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	9	5988477	5988477	C	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.662	p.G221V	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	60	0	0	47	8	14.55	-	-	-	A	5988477	C	A	5988477	3	1	697	1	0	0	0	0	1	0	0	0	8322	855	30	2	5677	2	KIAA2026	9	5988477	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		5988477	135224954	29	60888										
UNC13B	0	genome.wustl.edu	37	chr9	35295823	35295823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gtgcaccagttccctgtgccGgtgcgatcgccacagcagct	12	15	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	9	35295823	35295823	G	A	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	1	known	silent	c.693	p.P231	0.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	57	0	0	14	24	63.16	-	-	-	A	35295823	G	A	35295823	2	1	697	1	0	0	0	0	0	0	0	1	17082	1103	39	1		1	UNC13B	9	35295823	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	29307346	35295823	105917608	30	60889										
ADAMTSL2	0	genome.wustl.edu	37	chr9	136405814	136405814	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gtccccgcccgcgacggcacAtcctgcaagctcactgacct	9	19	1	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	9	136405814	136405814	A	G	SNP	ADAMTSL2	ENST00000393061	human	ensembl	69_37n	1	known	silent	c.834	p.T278	0.017	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859	20	0	0	11	12	52.17	-	-	-	G	136405814	A	G	136405814	2	3	697	1	0	0	0	0	0	0	0	1	275	204	8	5		5	ADAMTSL2	9	136405814	Silent	SNP	A	TCGA-D8-A1X5-01A-11D-A14G-09	101109991	136405814	4807617	31	60890										
FAM160A2	0	genome.wustl.edu	37	chr11	6232928	6232928	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ccttggcgttcaggggccccGccccgggtgagtagaactgg	16	13	1	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	11	6232928	6232928	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	silent	c.2769	p.G923	0.007	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	27	0	0	18	8	30.77	-	-	-	A	6232928	G	A	6232928	2	1	697	1	0	0	0	0	0	0	0	1	5509	1074	38	1		1	FAM160A2	11	6232928	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		6232928	128773588	32	60891										
ANO3	0	genome.wustl.edu	37	chr11	26620415	26620415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	tctctcataggaaacacttcGtccccagtttgaagccaagt	7	12	2	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	11	26620415	26620415	G	A	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	missense	c.1541	p.R514H	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	25	0	0	33	6	15.38	-	-	-	A	26620415	G	A	26620415	3	1	697	1	0	0	0	0	1	0	0	0	697	1145	40	1	1603	1	ANO3	11	26620415	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	20387487	26620415	108386101	33	60892										
MS4A14	0	genome.wustl.edu	37	chr11	60184021	60184021	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gcaaagcaaaggctggcaatCtccaaagcagaaatccttag	9	10	1	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	11	60184021	60184021	C	T	SNP	MS4A14	ENST00000300187	human	ensembl	69_37n	1	known	missense	c.1580	p.S527F	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	34	0	0	30	6	16.67	-	-	-	T	60184021	C	T	60184021	3	4	697	1	0	0	0	0	1	0	0	0	9930	913	32	2	1598	2	MS4A14	11	60184021	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	33563606	60184021	74822495	34	60893										
DDB1	0	genome.wustl.edu	37	chr11	61094351	61094351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	acctcataggtttttacgtgCcgcccctgagggtcctgggg	13	12	1	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	11	61094351	61094351	C	T	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	silent	c.564	p.R188	0.999	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	27	0	0	26	11	29.73	-	-	-	T	61094351	C	T	61094351	2	4	697	1	0	0	0	0	0	0	0	1	4354	726	26	4		4	DDB1	11	61094351	Silent	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09	910330	61094351	73912165	35	60894										
SNX19	0	genome.wustl.edu	37	chr11	130781614	130781614	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	agcgacgattcacagtgtggTaggccagctgctgcaggccg	15	11	1	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	11	130781614	130781614	T	C	SNP	SNX19	ENST00000265909	human	ensembl	69_37n	-1	known	missense	c.1727	p.Y576C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451	73	0	0	29	29	50	-	-	-	C	130781614	T	C	130781614	3	2	697	1	0	0	0	0	1	0	0	0	14979	1638	57	5	1291	5	SNX19	11	130781614	Missense_Mutation	SNP	T	TCGA-D8-A1X5-01A-11D-A14G-09	69687263	130781614	4224902	36	60895										
DERA	0	genome.wustl.edu	37	chr12	16115830	16115830	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ctgtggaagatggagctacaGaaatcgacgtggtaattaac	12	6	0	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	12	16115830	16115830	G	T	SNP	DERA	ENST00000428559	human	ensembl	69_37n	1	known	nonsense	c.457	p.E153*	1.000	pfam_DeoC/AroFGH_arch,pirsf_DeoC,tigrfam_DeoC	pfam_DeoC/AroFGH_arch,pirsf_DeoC,tigrfam_DeoC	-	no_errors	DERA	HGNC	ENSG00000023697	56	0	0	47	11	18.97	-	-	-	T	16115830	G	T	16115830	4	4	697	1	0	0	0	0	0	1	0	0	4481	943	33	2	475	2	DERA	12	16115830	Nonsense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		16115830	117736065	37	60896										
CASC5	0	genome.wustl.edu	37	chr15	40917759	40917761	+	In_Frame_Del	DEL	AAG	AAG	-													0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ccaaaaaagaacgtgggtacAagaagaagaagatattcata							TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	15	40917759	40917761	AAG	-	DEL	CASC5	ENST00000346991	human	ensembl	69_37n	1	known	in_frame_del	c.5375_5377	p.E1795in_frame_del	0.980:0.985:0.981	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	33	0	0	16	2	11.11	-	-	-	-	40917761	AAG	-	40917759	7	5	697	1	0	1	0	1	0	0	0	0	2688	130	5	0	5413	0	CASC5	15	40917759	In_Frame_Del	DEL	AAG	TCGA-D8-A1X5-01A-11D-A14G-09		40917759	61613633	38	60897										
TP53	0	genome.wustl.edu	37	chr17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	cgcccatgcaggaactgttaCacatgtagttgtagtggatg	12	8	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	17	7577568	7577568	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.713	p.C238F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	13	15	53.57	-	-	-	A	7577568	C	A	7577568	3	1	697	1	0	0	0	0	1	0	0	0	16477	478	17	4	577	4	TP53	17	7577568	Missense_Mutation	SNP	C	TCGA-D8-A1X5-01A-11D-A14G-09		7577568	73617642	39	60898										
TSEN54	0	genome.wustl.edu	37	chr17	73520470	73520470	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	acagcttcagggacttcacgTtgccccaggatgtggggcac	13	12	2	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	17	73520470	73520470	T	C	SNP	TSEN54	ENST00000333213	human	ensembl	69_37n	1	known	silent	c.1558	p.L520	0.999	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173	59	0	0	55	10	15.38	-	-	-	C	73520470	T	C	73520470	2	2	697	1	0	0	0	0	0	0	0	1	16710	1722	60	5		5	TSEN54	17	73520470	Silent	SNP	T	TCGA-D8-A1X5-01A-11D-A14G-09	65942902	73520470	7674740	40	60899										
TMX3	0	genome.wustl.edu	37	chr18	66354926	66354926	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gtgtctccaagttcatacaaGaggaagccatccatagcaag	9	10	2	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	18	66354926	66354926	G	T	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	silent	c.714	p.L238	0.993	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	40	0	0	38	16	29.63	-	-	-	T	66354926	G	T	66354926	2	4	697	1	0	0	0	0	0	0	0	1	16363	929	33	2		2	TMX3	18	66354926	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		66354926	11722322	41	60900										
IL12RB1	0	genome.wustl.edu	37	chr19	18188415	18188415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ctcccactccatacgcagctGcccggccaacttggacacct	7	19	0	0			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	19	18188415	18188415	G	T	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.460	p.Q154K	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	31	0	0	24	4	14.29	-	-	-	T	18188415	G	T	18188415	3	4	697	1	0	0	0	0	1	0	0	0	7680	1328	46	4	1709	4	IL12RB1	19	18188415	Missense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		18188415	40940568	42	60901										
ZNF233	0	genome.wustl.edu	37	chr19	44778658	44778658	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	gttcatcagaggatccacacGggagagaaaccctataaatg	10	9	2	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	19	44778658	44778658	G	A	SNP	ZNF233	ENST00000391958	human	ensembl	69_37n	1	known	silent	c.1845	p.T615	0.042	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915	52	0	0	61	16	20.51	-	-	-	A	44778658	G	A	44778658	2	1	697	1	0	0	0	0	0	0	0	1	17882	1103	39	1		1	ZNF233	19	44778658	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09	26590243	44778658	14350325	43	60902										
YTHDF1	0	genome.wustl.edu	37	chr20	61834989	61834989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ggctgcccaaaaacagcatcGtgcataaaatgatggtctcc	9	11	1	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	20	61834989	61834989	G	A	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	silent	c.303	p.H101	0.006	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	34	0	0	65	17	20.48	-	-	-	A	61834989	G	A	61834989	2	1	697	1	0	0	0	0	0	0	0	1	17595	1136	40	1		1	YTHDF1	20	61834989	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		61834989	1190531	44	60903										
APOL6	0	genome.wustl.edu	37	chr22	36055202	36055202	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	ctcagagccaacccacgcttGgccaatgctaccaagcgtct	8	16	2	1			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	22	36055202	36055202	G	A	SNP	APOL6	ENST00000409652	human	ensembl	69_37n	1	known	silent	c.591	p.L197	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963	31	0	0	23	6	20.69	-	-	-	A	36055202	G	A	36055202	2	1	697	1	0	0	0	0	0	0	0	1	812	1339	47	4		4	APOL6	22	36055202	Silent	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		36055202	15249364	45	60904										
CDKL5	0	genome.wustl.edu	37	chrX	18638042	18638042	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	tcaaggaaaaagagaagcaaGgatttttcaggtcaatgaaa	10	4	3	2			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	X	18638042	18638042	G	T	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	nonsense	c.2332	p.G778*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	32	0	0	18	7	28	-	-	-	T	18638042	G	T	18638042	4	4	697	1	0	0	0	0	0	1	0	0	3186	1001	35	4	2390	4	CDKL5	23	18638042	Nonsense_Mutation	SNP	G	TCGA-D8-A1X5-01A-11D-A14G-09		18638042	136632518	46	60905										
RAB9B	0	genome.wustl.edu	37	chrX	103080689	103080689	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	catcacccaagagaatgaccTttaagagcagggatttccca	8	11	1	3			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	X	103080689	103080689	T	G	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.26	p.K9T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	31	0	0	14	8	36.36	-	-	-	G	103080689	T	G	103080689	3	3	697	1	0	0	0	0	1	0	0	0	13042	1609	56	5	583	5	RAB9B	23	103080689	Missense_Mutation	SNP	T	TCGA-D8-A1X5-01A-11D-A14G-09	84442647	103080689	52189871	47	60906										
STAG2	0	genome.wustl.edu	37	chrX	123196791	123196791	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.827988076446844	1.1801652892562	7.86776859504132	0.828186167899087	1	1	0	agaagacacagttggatgatAggacaaaaatcactgagctt	10	6	1	4			TCGA-D8-A1X5-01A-11D-A14G-09	TCGA-D8-A1X5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db4526d4-e344-4b5a-bb66-fd43b41764ca	6d77bba9-4db6-4277-b5ce-b7e3d2f1d7cc	X	123196791	123196791	A	T	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.1678	p.R560W	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	43	0	0	23	19	45.24	-	-	-	T	123196791	A	T	123196791	3	4	697	1	0	0	0	0	1	0	0	0	15334	411	15	5	1740	5	STAG2	23	123196791	Missense_Mutation	SNP	A	TCGA-D8-A1X5-01A-11D-A14G-09	20116102	123196791	32073769	48	60907										
CCDC23	0	genome.wustl.edu	37	chr1	43282112	43282112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ttaatctcacctctgctcttTgtctctgcttcagctcctgc	5	15	5	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	43282112	43282112	T	C	SNP	CCDC23	ENST00000372521	human	ensembl	69_37n	-1	known	missense	c.104	p.Q35R	1.000	NULL	NULL	-	no_errors	CCDC23	HGNC	ENSG00000177868	128	0	0	203	133	39.58	-	-	-	C	43282112	T	C	43282112	3	2	698	1	0	0	0	0	1	0	0	0	2824	1812	63	5	104	5	CCDC23	1	43282112	Missense_Mutation	SNP	T	TCGA-D8-A1X6-01A-11D-A14K-09		43282112	205968509	1	60908										
USP24	0	genome.wustl.edu	37	chr1	55589159	55589159	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ctgtaggcacgtaacaagaaGagacaaagcctctcccgcaa	9	12	1	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	55589159	55589159	G	A	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.4237	p.L1413F	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	35	0	0	66	39	36.79	-	-	-	A	55589159	G	A	55589159	3	1	698	1	0	0	0	0	1	0	0	0	17152	942	33	2	3757	2	USP24	1	55589159	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	12307047	55589159	193661462	2	60909										
VSIG8	0	genome.wustl.edu	37	chr1	159828685	159828685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ctgtccatccccgttgatccGcacagcagacagcagtgcta	9	15	0	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	159828685	159828685	G	A	SNP	VSIG8	ENST00000368100	human	ensembl	69_37n	-1	known	missense	c.67	p.R23W	1.000	pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG8	HGNC	ENSG00000243284	18	0	0	34	23	40.35	-	-	-	A	159828685	G	A	159828685	3	1	698	1	0	0	0	0	1	0	0	0	17323	1086	38	1	1201	1	VSIG8	1	159828685	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	104239526	159828685	89421936	3	60910										
RGPD4	0	genome.wustl.edu	37	chr2	108479165	108479165	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tgcccctggagtctgtaaaaGagatgcttaagtcagtcatg	11	8	3	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	108479165	108479165	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.2233	p.E745Q	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	9	0	0	3	7	70	-	-	-	C	108479165	G	C	108479165	3	2	698	1	0	0	0	0	1	0	0	0	13371	943	33	2	2295	2	RGPD4	2	108479165	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		108479165	134720208	4	60911										
LIMS1	0	genome.wustl.edu	37	chr2	109300418	109300418	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tccattggagctgaagaaaaGacttaagaaactagctgaga	10	6	0	5			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	109300418	109300418	G	T	SNP	LIMS1	ENST00000542845	human	ensembl	69_37n	1	known	missense	c.1127	p.R376I	1.000	pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756	43	0	0	86	24	21.82	-	-	-	T	109300418	G	T	109300418	3	4	698	1	0	0	0	0	1	0	0	0	8858	942	33	2	975	2	LIMS1	2	109300418	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	821253	109300418	133898955	5	60912										
NFE2L2	0	genome.wustl.edu	37	chr2	178098009	178098009	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ctacaaacgggaatgtctgcGccaaaagctgcatgcagtca	10	11	2	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	178098009	178098009	G	C	SNP	NFE2L2	ENST00000397062	human	ensembl	69_37n	-1	known	missense	c.371	p.A124G	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,superfamily_Sepin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	92	0	0	72	54	42.52	-	-	-	C	178098009	G	C	178098009	3	2	698	1	0	0	0	0	1	0	0	0	10440	1087	38	3	1458	3	NFE2L2	2	178098009	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	68797591	178098009	65101364	6	60913										
UGT1A4	0	genome.wustl.edu	37	chr2	234680995	234680995	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gccgtgttctgggtggagttTgtgatgaggcacaagggcgc	18	7	1	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	234680995	234680995	T	C	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1395	p.F465	0.994	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	25	0	0	47	47	49.47	-	-	-	C	234680995	T	C	234680995	2	2	698	1	0	0	0	0	0	0	0	1	17044	1809	63	5		5	UGT1A4	2	234680995	Silent	SNP	T	TCGA-D8-A1X6-01A-11D-A14K-09	56582986	234680995	8518378	7	60914										
KAT2B	0	genome.wustl.edu	37	chr3	20167590	20167590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gccaaaagaatacatcacacGgctcgtctttgacccgtaag	8	12	2	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	20167590	20167590	G	A	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	missense	c.1607	p.R536Q	1.000	pirsf_Hist_acetylase_PCAF,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	22	0	0	43	40	48.19	-	-	-	A	20167590	G	A	20167590	3	1	698	1	0	0	0	0	1	0	0	0	8036	1116	39	1	1645	1	KAT2B	3	20167590	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		20167590	177854840	8	60915										
SLC26A6	0	genome.wustl.edu	37	chr3	48668568	48668568	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tgttgggggccactgggggcAccagcctgtgagaggtatct	17	9	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	48668568	48668568	A	C	SNP	SLC26A6	ENST00000395550	human	ensembl	69_37n	-1	known	missense	c.992	p.V331G	0.007	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697	36	0	0	45	6	11.76	-	-	-	C	48668568	A	C	48668568	3	2	698	1	0	0	0	0	1	0	0	0	14610	159	6	5	1375	5	SLC26A6	3	48668568	Missense_Mutation	SNP	A	TCGA-D8-A1X6-01A-11D-A14K-09	28500978	48668568	149353862	9	60916										
P4HTM	0	genome.wustl.edu	37	chr3	49044240	49044240	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ccgagcgcggcaagcgctgtTccaacaggagatggcccgcc	14	15	0	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	49044240	49044240	T	C	SNP	P4HTM	ENST00000343546	human	ensembl	69_37n	1	known	missense	c.1592	p.F531S	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	8	0	0	16	10	38.46	-	-	-	C	49044240	T	C	49044240	3	2	698	1	0	0	0	0	1	0	0	0	11433	1783	62	5	1626	5	P4HTM	3	49044240	Missense_Mutation	SNP	T	TCGA-D8-A1X6-01A-11D-A14K-09	375672	49044240	148978190	10	60917										
ATXN7	0	genome.wustl.edu	37	chr3	63981414	63981414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	aggggcgatggatcctgtgtGcagtatgcaatccagacaag	14	8	0	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	63981414	63981414	G	C	SNP	ATXN7	ENST00000398590	human	ensembl	69_37n	1	known	missense	c.1916	p.C639S	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	95	0	0	149	87	36.86	-	-	-	C	63981414	G	C	63981414	3	2	698	1	0	0	0	0	1	0	0	0	1219	1319	46	4	2022	4	ATXN7	3	63981414	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	14937174	63981414	134041016	11	60918										
GAP43	0	genome.wustl.edu	37	chr3	115439676	115439676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ccaaacctaaggaaagtgccCggcaggacgagggtaaagaa	13	9	0	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	115439676	115439676	C	T	SNP	GAP43	ENST00000305124	human	ensembl	69_37n	1	known	missense	c.664	p.R222W	1.000	pfam_Neuromodulin_C	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	65	0	0	95	65	40.62	-	-	-	T	115439676	C	T	115439676	3	4	698	1	0	0	0	0	1	0	0	0	6285	643	23	1	816	1	GAP43	3	115439676	Missense_Mutation	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09	51458262	115439676	82582754	12	60919										
C3orf55	0	genome.wustl.edu	37	chr3	157289743	157289743	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	catctttatctaccactccaGatttttacagccatcttcga	3	13	3	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	157289743	157289743	G	T	SNP	C3orf55	ENST00000449199	human	ensembl	69_37n	1	known	splice_site	c.214-1	e3-1	0.008	-	-	-	no_errors	C3orf55	HGNC	ENSG00000174899	82	0	0	144	107	42.46	-	-	-	T	157289743	G	T	157289743	5	4	698	1	0	0	0	0	0	0	1	0	2254	956	33	2	223	2	C3orf55	3	157289743	Splice_Site	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	41850067	157289743	40732687	13	60920										
EXOSC9	0	genome.wustl.edu	37	chr4	122735146	122735146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	cggtggtgatcaagctatcaTtcttgatggtataaaaatgg	11	5	3	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	4	122735146	122735146	T	C	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	missense	c.1100	p.I367T	0.980	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	39	0	0	65	42	39.25	-	-	-	C	122735146	T	C	122735146	3	2	698	1	0	0	0	0	1	0	0	0	5358	1493	52	5	1138	5	EXOSC9	4	122735146	Missense_Mutation	SNP	T	TCGA-D8-A1X6-01A-11D-A14K-09		122735146	68419130	14	60921										
MAP3K1	0	genome.wustl.edu	37	chr5	56160679	56160680	+	Frame_Shift_Ins	INS	-	-	A													0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	atgcgggccagactgtacttINSactgcagcagatagggccta							TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	5	56160679	56160680	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.953_954	p.L319fs	0.965:0.937	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	50	0	0	69	120	63.49	-	-	-	A	56160680	-	A	56160679	7	5	698	1	0	1	1	0	0	0	0	0	9314	1764	61	0	967	0	MAP3K1	5	56160679	Frame_Shift_Ins	INS	-	TCGA-D8-A1X6-01A-11D-A14K-09		56160679	124754581	15	60922										
ACTL6B	0	genome.wustl.edu	37	chr7	100244424	100244424	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gctggtggtcaccacgtggcCcacacccaacatggtgttcc	11	15	1	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	7	100244424	100244424	C	G	SNP	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	missense	c.967	p.G323R	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	9	0	0	18	9	33.33	-	-	-	G	100244424	C	G	100244424	3	3	698	1	0	0	0	0	1	0	0	0	199	623	22	4	329	4	ACTL6B	7	100244424	Missense_Mutation	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09		100244424	58894239	16	60923										
MLL3	0	genome.wustl.edu	37	chr7	151841851	151841852	+	Frame_Shift_Ins	INS	-	-	CC													0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ttccattcagttttcatcttINSccggtactgcgatgacttgg							TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	7	151841851	151841852	-	CC	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.14461_14460	p.K4820fs	0.999:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	99	0	0	192	121	38.66	-	-	-	CC	151841852	-	CC	151841851	7	5	698	1	0	1	1	0	0	0	0	0	9693	1792	62	0	465	0	MLL3	7	151841851	Frame_Shift_Ins	INS	-	TCGA-D8-A1X6-01A-11D-A14K-09	51597427	151841851	7296812	17	60924										
KDM4C	0	genome.wustl.edu	37	chr9	6805599	6805599	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tttcattattttatttttagGtgattcctcctaaggagtgg	8	5	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	6805599	6805599	G	C	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.145	p.V49L	1.000	pfam_TF_JmjN,smart_TF_JmjN,pfscan_TF_JmjN	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	11	0	0	20	22	52.38	-	-	-	C	6805599	G	C	6805599	3	2	698	1	0	0	0	0	1	0	0	0	8184	1275	44	4	221	4	KDM4C	9	6805599	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		6805599	134407832	18	60925										
BRD3	0	genome.wustl.edu	37	chr9	136918532	136918532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tggggttggagacctccgggGggggtgggttcacagggccc	21	9	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	136918532	136918532	G	A	SNP	BRD3	ENST00000303407	human	ensembl	69_37n	-1	known	missense	c.68	p.P23L	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925	29	0	0	14	31	68.89	-	-	-	A	136918532	G	A	136918532	3	1	698	1	0	0	0	0	1	0	0	0	1511	1232	43	4	2156	4	BRD3	9	136918532	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	130112933	136918532	4294899	19	60926										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	43	0	0	63	38	36.54	-	-	-	-	8111434	CA	-	8111433	8	5	698	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-D8-A1X6-01A-11D-A14K-09		8111433	127423314	20	60927										
SEC23IP	0	genome.wustl.edu	37	chr10	121674317	121674317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gtgtgacttacgctttaggaGcattattgagtgtggtaagt	13	4	0	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	10	121674317	121674317	G	A	SNP	SEC23IP	ENST00000369075	human	ensembl	69_37n	1	known	missense	c.1388	p.S463N	1.000	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651	237	0	0	368	217	36.9	-	-	-	A	121674317	G	A	121674317	3	1	698	1	0	0	0	0	1	0	0	0	14081	971	34	4	1414	4	SEC23IP	10	121674317	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	113562884	121674317	13860430	21	60928										
AMBRA1	0	genome.wustl.edu	37	chr11	46419045	46419045	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gggcctgcagcgtcccccctGctgctgccaccatccagaag	11	18	0	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	11	46419045	46419045	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	silent	c.3852	p.S1284	0.994	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	59	0	0	77	22	22.22	-	-	-	A	46419045	G	A	46419045	2	1	698	1	0	0	0	0	0	0	0	1	565	1310	46	4		4	AMBRA1	11	46419045	Silent	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		46419045	88587471	22	60929										
NCKAP1L	0	genome.wustl.edu	37	chr12	54902260	54902260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ttctgtcacggattgaagatCggcggatactcattggcatg	12	8	3	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	54902260	54902260	C	T	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.451	p.R151W	0.997	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	61	0	0	164	37	18.41	-	-	-	T	54902260	C	T	54902260	3	4	698	1	0	0	0	0	1	0	0	0	10294	875	31	1	469	1	NCKAP1L	12	54902260	Missense_Mutation	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09		54902260	78949635	23	60930										
MARS	0	genome.wustl.edu	37	chr12	57894289	57894289	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	caagtgtggcaagctcatcaAtgctgtcgagcttaaggtaa	11	8	2	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	57894289	57894289	A	T	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.1277	p.N426I	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	59	0	0	62	54	46.55	-	-	-	T	57894289	A	T	57894289	3	4	698	1	0	0	0	0	1	0	0	0	9387	101	4	5	1315	5	MARS	12	57894289	Missense_Mutation	SNP	A	TCGA-D8-A1X6-01A-11D-A14K-09	2992029	57894289	75957606	24	60931										
HCFC2	0	genome.wustl.edu	37	chr12	104495851	104495851	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	caatcaatggttgtgggataGgtcctttcagcaaaatcagt	10	7	3	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	104495851	104495851	G	C	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.1984	p.G662R	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	79	0	0	123	75	37.88	-	-	-	C	104495851	G	C	104495851	3	2	698	1	0	0	0	0	1	0	0	0	7044	1000	35	4	2038	4	HCFC2	12	104495851	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	46601562	104495851	29356044	25	60932										
TBX3	0	genome.wustl.edu	37	chr12	115118782	115118782	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	agtagcggggctgtccgggtGaatgtacatcctctttggca	14	9	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	115118782	115118782	G	A	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.559	p.H187Y	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	37	0	0	61	37	37.76	-	-	-	A	115118782	G	A	115118782	3	1	698	1	0	0	0	0	1	0	0	0	15754	1290	45	2	1700	2	TBX3	12	115118782	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	10622931	115118782	18733113	26	60933										
SAP18	0	genome.wustl.edu	37	chr13	21714920	21714920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	tggaggagatggtgtttttgGtctcggggaggctcggaggc	20	5	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	13	21714920	21714920	G	A	SNP	SAP18	ENST00000450573	human	ensembl	69_37n	1	putative	missense	c.8	p.G3D	0.000	NULL	pfam_SAP18	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SAP18	HGNC	ENSG00000150459	8	0	0	11	6	35.29	-	-	-	A	21714920	G	A	21714920	3	1	698	1	0	0	0	0	1	0	0	0	13918	1276	44	4		4	SAP18	13	21714920	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		21714920	93454958	27	60934										
MTUS2	0	genome.wustl.edu	37	chr13	29608146	29608146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	aggattgggtgcaatgtcccGtttaccatctgcaaagagca	11	9	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	13	29608146	29608146	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	missense	c.2360	p.R787H	0.992	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	73	0	0	97	84	46.41	-	-	-	A	29608146	G	A	29608146	3	1	698	1	0	0	0	0	1	0	0	0	10038	1145	40	1	2366	1	MTUS2	13	29608146	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	7893226	29608146	85561732	28	60935										
FOXG1	0	genome.wustl.edu	37	chr14	29237628	29237628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gccacgcaccacctcacggcCgccgcgctagccgcctcggt	11	21	1	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	14	29237628	29237628	C	T	SNP	FOXG1	ENST00000313071	human	ensembl	69_37n	1	known	silent	c.1143	p.A381	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165	15	0	0	11	13	54.17	-	-	-	T	29237628	C	T	29237628	2	4	698	1	0	0	0	0	0	0	0	1	6055	639	23	1		1	FOXG1	14	29237628	Silent	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09		29237628	78111912	29	60936										
PSMA3	0	genome.wustl.edu	37	chr14	58737668	58737668	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	acagtaactaatggaagacaTgaaattgttccaaaagatat	7	5	0	3			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	14	58737668	58737668	T	A	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	1	known	missense	c.675	p.H225Q	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567	15	0	0	49	26	34.67	-	-	-	A	58737668	T	A	58737668	3	1	698	1	0	0	0	0	1	0	0	0	12748	1461	51	5	713	5	PSMA3	14	58737668	Missense_Mutation	SNP	T	TCGA-D8-A1X6-01A-11D-A14K-09	29500040	58737668	48611872	30	60937										
ADAMTS7	0	genome.wustl.edu	37	chr15	79058631	79058631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ggtcctgtcccgccatggagGgggcagctggctctggctgt	17	12	1	0			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	15	79058631	79058631	G	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	missense	c.3622	p.P1208T	0.001	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	12	0	0	15	15	50	-	-	-	T	79058631	G	T	79058631	3	4	698	1	0	0	0	0	1	0	0	0	271	1232	43	4	1462	4	ADAMTS7	15	79058631	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		79058631	23472761	31	60938										
CTCF	0	genome.wustl.edu	37	chr16	67644736	67644736	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ccttaataaaggcaggggaaAtggaaggtgatgcagtcgaa	14	5	0	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	16	67644736	67644736	A	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.1	p.M1V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	9	0	0	10	10	50	-	-	-	G	67644736	A	G	67644736	3	3	698	1	0	0	0	0	1	0	0	0	4032	101	4	5	3	5	CTCF	16	67644736	Missense_Mutation	SNP	A	TCGA-D8-A1X6-01A-11D-A14K-09		67644736	22710017	32	60939										
NEUROD2	0	genome.wustl.edu	37	chr17	37761947	37761948	+	Frame_Shift_Ins	INS	-	-	G													0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	agttgccattgagacagagcINSggggggctgagcgggccctc							TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	17	37761947	37761948	-	G	INS	NEUROD2	ENST00000302584	human	ensembl	69_37n	-1	known	frame_shift_ins	c.906_905	p.L303fs	1.000:1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD2	HGNC	ENSG00000171532	27	0	0	27	12	30.77	-	-	-	G	37761948	-	G	37761947	7	5	698	1	0	1	1	0	0	0	0	0	10421	755	27	0	246	0	NEUROD2	17	37761947	Frame_Shift_Ins	INS	-	TCGA-D8-A1X6-01A-11D-A14K-09		37761947	43433263	33	60940										
DSC1	0	genome.wustl.edu	37	chr18	28714069	28714069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	agttataatcaagattttgcCgttgacgaagaatggcagtt	10	5	1	3			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	18	28714069	28714069	C	T	SNP	DSC1	ENST00000257198	human	ensembl	69_37n	-1	known	missense	c.1901	p.R634Q	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmocollin,prints_Cadherin,prints_Desmo_cadherin	-	no_errors	DSC1	HGNC	ENSG00000134765	30	0	0	59	41	41	-	-	-	T	28714069	C	T	28714069	3	4	698	1	0	0	0	0	1	0	0	0	4800	652	23	1	839	1	DSC1	18	28714069	Missense_Mutation	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09		28714069	49363179	34	60941										
PLD3	0	genome.wustl.edu	37	chr19	40883954	40883954	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	ggcacctcgctgctggtgacGcagaatgggaggggcggcct	18	11	0	2			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	19	40883954	40883954	G	A	SNP	PLD3	ENST00000356508	human	ensembl	69_37n	1	known	silent	c.1347	p.T449	0.495	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223	15	0	0	14	16	53.33	-	-	-	A	40883954	G	A	40883954	2	1	698	1	0	0	0	0	0	0	0	1	12121	1074	38	1		1	PLD3	19	40883954	Silent	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09		40883954	18245029	35	60942										
TAB3	0	genome.wustl.edu	37	chrX	30872398	30872398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	taaaagattttcagtcgttgCtcggcctacggtaattttaa	8	7	1	1			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	X	30872398	30872398	C	T	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	missense	c.1384	p.A462T	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	75	0	0	107	38	26.21	-	-	-	T	30872398	C	T	30872398	3	4	698	1	0	0	0	0	1	0	0	0	15589	797	28	4	778	4	TAB3	23	30872398	Missense_Mutation	SNP	C	TCGA-D8-A1X6-01A-11D-A14K-09		30872398	124398162	36	60943										
PCDH19	0	genome.wustl.edu	37	chrX	99662740	99662740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.838150888885889	1.15584415584416	1.41269841269841	1.05952380952381	1	1	0	gtcgatctgaaagagctcgcGcgtgcggtcgttgacgtagc	15	10	1	3			TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	X	99662740	99662740	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.856	p.R286C	0.115	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	77	0	0	60	59	49.58	-	-	-	A	99662740	G	A	99662740	3	1	698	1	0	0	0	0	1	0	0	0	11587	1087	38	1	2614	1	PCDH19	23	99662740	Missense_Mutation	SNP	G	TCGA-D8-A1X6-01A-11D-A14K-09	68790342	99662740	55607820	37	60944										
AADACL4	0	genome.wustl.edu	37	chr1	12711145	12711145	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tttgttacctccaacaggggAatatatttgagaagctggga	11	6	0	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	12711145	12711145	A	T	SNP	AADACL4	ENST00000376221	human	ensembl	69_37n	1	known	missense	c.172	p.N58Y	0.011	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518	38	0	0	86	40	31.5	-	-	-	T	12711145	A	T	12711145	3	4	699	1	0	0	0	0	1	0	0	0	13	246	9	5	178	5	AADACL4	1	12711145	Missense_Mutation	SNP	A	TCGA-D8-A1X7-01A-11D-A14K-09		12711145	236539476	1	60945										
TMCO4	0	genome.wustl.edu	37	chr1	20027295	20027295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	gatgatcctcccggacaccaCcttccggaaaggctcccaat	8	16	0	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	20027295	20027295	C	T	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	missense	c.1348	p.V450M	1.000	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	38	0	0	51	29	36.25	-	-	-	T	20027295	C	T	20027295	3	4	699	1	0	0	0	0	1	0	0	0	16093	507	18	4	568	4	TMCO4	1	20027295	Missense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09	7316150	20027295	229223326	2	60946										
PCNXL2	0	genome.wustl.edu	37	chr1	233344320	233344320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	gagagaagagcttcaggccaTacacaacgtaactgggaggg	14	8	1	2			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	233344320	233344320	T	C	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.2807	p.Y936C	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	42	0	0	197	44	18.26	-	-	-	C	233344320	T	C	233344320	3	2	699	1	0	0	0	0	1	0	0	0	11665	1406	49	5	3694	5	PCNXL2	1	233344320	Missense_Mutation	SNP	T	TCGA-D8-A1X7-01A-11D-A14K-09	213317025	233344320	15906301	3	60947										
OTOF	0	genome.wustl.edu	37	chr2	26707384	26707384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tctcattggccttgtggggcGtcttgatgttgtcccctttg	12	10	2	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	26707384	26707384	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.1163	p.T388M	0.997	pfam_FerIin-domain	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	93	0	0	86	59	40.69	-	-	-	A	26707384	G	A	26707384	3	1	699	1	0	0	0	0	1	0	0	0	11376	1145	40	1	5299	1	OTOF	2	26707384	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09		26707384	216491989	4	60948										
USP34	0	genome.wustl.edu	37	chr2	61468772	61468772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	ttccatgcgtttgtaaaacaGcatatatgcactgtgtgtct	8	8	1	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	61468772	61468772	G	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	silent	c.6700	p.L2234	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	99	0	0	193	126	39.38	-	-	-	A	61468772	G	A	61468772	2	1	699	1	0	0	0	0	0	0	0	1	17162	962	34	4		4	USP34	2	61468772	Silent	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09	34761388	61468772	181730601	5	60949										
SLC9A2	0	genome.wustl.edu	37	chr2	103311569	103311569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	gggtcacaacttttggagagAcaagtaagaaggtcttatgc	12	6	2	2			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	103311569	103311569	A	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.1583	p.D528G	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	93	0	0	148	119	44.24	-	-	-	G	103311569	A	G	103311569	3	3	699	1	0	0	0	0	1	0	0	0	14801	275	10	5	1609	5	SLC9A2	2	103311569	Missense_Mutation	SNP	A	TCGA-D8-A1X7-01A-11D-A14K-09	41842797	103311569	139887804	6	60950										
EPC2	0	genome.wustl.edu	37	chr2	149501311	149501311	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	atttgaaattatgattgacaGacttgaaaaagccagttcta	7	5	1	5			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	149501311	149501311	G	A	SNP	EPC2	ENST00000258484	human	ensembl	69_37n	1	known	missense	c.434	p.R145K	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999	36	0	0	58	15	20.55	-	-	-	A	149501311	G	A	149501311	3	1	699	1	0	0	0	0	1	0	0	0	5198	942	33	2	444	2	EPC2	2	149501311	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09	46189742	149501311	93698062	7	60951										
STK11IP	0	genome.wustl.edu	37	chr2	220476737	220476737	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	ccggctcttcctggatgttgAggtgttcagcgatgcccagg	14	11	2	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	220476737	220476737	A	T	SNP	STK11IP	ENST00000456909	human	ensembl	69_37n	1	novel	missense	c.2396	p.E799V	0.977	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589	50	0	0	61	27	30.68	-	-	-	T	220476737	A	T	220476737	3	4	699	1	0	0	0	0	1	0	0	0	15379	304	11	5	2503	5	STK11IP	2	220476737	Missense_Mutation	SNP	A	TCGA-D8-A1X7-01A-11D-A14K-09	70975426	220476737	22722636	8	60952										
ANKRD32	0	genome.wustl.edu	37	chr5	94005921	94005921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tattggctccaaggtgctccAcctgacgctactcaaatttt	7	12	1	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	5	94005921	94005921	A	C	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	1	known	missense	c.1598	p.H533P	0.019	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	42	0	0	86	19	18.1	-	-	-	C	94005921	A	C	94005921	3	2	699	1	0	0	0	0	1	0	0	0	659	159	6	5	1644	5	ANKRD32	5	94005921	Missense_Mutation	SNP	A	TCGA-D8-A1X7-01A-11D-A14K-09		94005921	86909339	9	60953										
FZD9	0	genome.wustl.edu	37	chr7	72849875	72849875	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	cgtggcggtcttcatgctcaAaattttcatgtcactggtgg	11	9	5	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	7	72849875	72849875	A	T	SNP	FZD9	ENST00000344575	human	ensembl	69_37n	1	known	missense	c.1538	p.K513I	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763	35	0	0	11	5	31.25	-	-	-	T	72849875	A	T	72849875	3	4	699	1	0	0	0	0	1	0	0	0	6186	14	1	5	1540	5	FZD9	7	72849875	Missense_Mutation	SNP	A	TCGA-D8-A1X7-01A-11D-A14K-09		72849875	86288788	10	60954										
GLI4	0	genome.wustl.edu	37	chr8	144358528	144358528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	gctggtcgggcttcatccagCaccaccgcatccacacgggc	11	17	1	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	8	144358528	144358528	C	G	SNP	GLI4	ENST00000340042	human	ensembl	69_37n	1	known	missense	c.685	p.H229D	0.939	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI4	HGNC	ENSG00000250571	21	0	0	23	8	25.81	-	-	-	G	144358528	C	G	144358528	3	3	699	1	0	0	0	0	1	0	0	0	6492	710	25	4	695	4	GLI4	8	144358528	Missense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09		144358528	2005494	11	60955										
DOCK8	0	genome.wustl.edu	37	chr9	317062	317062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	ggaggatgctgtggaaatacGtccagtaccagaatgtccca	12	9	0	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	317062	317062	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.761	p.R254H	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	36	0	0	56	31	35.23	-	-	-	A	317062	G	A	317062	3	1	699	1	0	0	0	0	1	0	0	0	4728	1145	40	1	787	1	DOCK8	9	317062	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09		317062	140896369	12	60956										
IKBKAP	0	genome.wustl.edu	37	chr9	111673326	111673326	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	aatctggttactggcatctaGaacagcaaggtcattactct	8	9	4	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	111673326	111673326	G	C	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.1324	p.L442V	0.998	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	65	0	0	134	32	19.28	-	-	-	C	111673326	G	C	111673326	3	2	699	1	0	0	0	0	1	0	0	0	7664	933	33	2	2778	2	IKBKAP	9	111673326	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09	111356264	111673326	29540105	13	60957										
SLC27A4	0	genome.wustl.edu	37	chr9	131115797	131115797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	gctgatccgggggcccgacgGcgtctgcattccctgccagc	14	16	1	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	131115797	131115797	G	A	SNP	SLC27A4	ENST00000300456	human	ensembl	69_37n	1	known	missense	c.1301	p.G434D	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	20	0	0	24	13	35.14	-	-	-	A	131115797	G	A	131115797	3	1	699	1	0	0	0	0	1	0	0	0	14617	1203	42	4	1331	4	SLC27A4	9	131115797	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09	19442471	131115797	10097634	14	60958										
FBXL14	0	genome.wustl.edu	37	chr12	1702880	1702880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tcaggttgagagcgcgcaggGagccgatctcctgcacaaac	13	12	2	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	12	1702880	1702880	G	A	SNP	FBXL14	ENST00000339235	human	ensembl	69_37n	-1	known	missense	c.353	p.S118F	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823	26	0	0	36	17	30.91	-	-	-	A	1702880	G	A	1702880	3	1	699	1	0	0	0	0	1	0	0	0	5756	1174	41	2	911	2	FBXL14	12	1702880	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09		1702880	132149015	15	60959										
MYBPC1	0	genome.wustl.edu	37	chr12	102053566	102053566	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	taccacatcaatctgaaaaaCgaagctggagaggcacatgc	9	10	2	2			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	12	102053566	102053566	C	T	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	silent	c.1884	p.N628	0.991	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	43	0	0	81	52	39.1	-	-	-	T	102053566	C	T	102053566	2	4	699	1	0	0	0	0	0	0	0	1	10083	535	19	1		1	MYBPC1	12	102053566	Silent	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09	100350686	102053566	31798329	16	60960										
CILP	0	genome.wustl.edu	37	chr15	65495782	65495782	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	agctctccgtgcttttgtctCagggttcatcaccatgtatg	9	11	4	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	15	65495782	65495782	C	A	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	nonsense	c.946	p.E316*	0.499	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	62	0	0	108	19	14.96	-	-	-	A	65495782	C	A	65495782	4	1	699	1	0	0	0	0	0	1	0	0	3458	835	29	2	2620	2	CILP	15	65495782	Nonsense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09		65495782	37035610	17	60961										
ZNF286B	0	genome.wustl.edu	37	chr17	18565506	18565506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	cacattcactacactcatagGgtttctctccagtgtgaatt	6	11	3	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	17	18565506	18565506	G	C	SNP	ZNF286B	ENST00000545289	human	ensembl	69_37n	-1	known	missense	c.1313	p.P438R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459	82	0	0	28	75	72.82	-	-	-	C	18565506	G	C	18565506	3	2	699	1	0	0	0	0	1	0	0	0	17920	1232	43	4	259	4	ZNF286B	17	18565506	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09		18565506	62629704	18	60962										
MAST1	0	genome.wustl.edu	37	chr19	12954345	12954345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	accttggctgggttccagggCggacggacgccggtggtctc	17	12	1	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	12954345	12954345	C	T	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.251	p.A84V	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	32	0	0	28	27	49.09	-	-	-	T	12954345	C	T	12954345	3	4	699	1	0	0	0	0	1	0	0	0	9395	768	27	1	265	1	MAST1	19	12954345	Missense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09		12954345	46174638	19	60963										
KIAA1683	0	genome.wustl.edu	37	chr19	18375974	18375974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	ggcttggcccagggtggggcGctgaggccaccgaggcgctg	20	12	0	1			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	18375974	18375974	G	T	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	missense	c.2376	p.S792R	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	30	0	0	33	14	29.79	-	-	-	T	18375974	G	T	18375974	3	4	699	1	0	0	0	0	1	0	0	0	8303	1078	38	3	1735	3	KIAA1683	19	18375974	Missense_Mutation	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09	5421629	18375974	40753009	20	60964										
FCGBP	0	genome.wustl.edu	37	chr19	40392802	40392802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	atagtacacaaggtcgtaggCcacacgcaggccgaagtcgg	13	11	0	0			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	40392802	40392802	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.7702	p.A2568T	0.999	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	26	0	0	36	12	25	-	-	-	T	40392802	C	T	40392802	3	4	699	1	0	0	0	0	1	0	0	0	5824	739	26	4	8599	4	FCGBP	19	40392802	Missense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09	22016828	40392802	18736181	21	60965										
SALL4	0	genome.wustl.edu	37	chr20	50408674	50408674	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tggtggctcagtacagctccGgagaagtcttctgaaggcac	13	10	3	2			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	20	50408674	50408674	G	A	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	silent	c.348	p.S116	0.050	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	34	0	0	55	26	32.1	-	-	-	A	50408674	G	A	50408674	2	1	699	1	0	0	0	0	0	0	0	1	13899	1103	39	1		1	SALL4	20	50408674	Silent	SNP	G	TCGA-D8-A1X7-01A-11D-A14K-09		50408674	12616846	22	60966										
USP9X	0	genome.wustl.edu	37	chrX	41025387	41025387	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0869565217391304	2	0.891988885883765	1.03333333333333	2.58333333333333	0.645833333333333	1	1	0	tcttcaaagctgtgaattgtCgagaaggaaaactagtagca	10	6	2	2			TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	X	41025387	41025387	C	T	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	nonsense	c.2248	p.R750*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	41	0	0	78	42	35	-	-	-	T	41025387	C	T	41025387	4	4	699	1	0	0	0	0	0	1	0	0	17187	876	31	1	2306	1	USP9X	23	41025387	Nonsense_Mutation	SNP	C	TCGA-D8-A1X7-01A-11D-A14K-09		41025387	114245173	23	60967										
NLRP3	0	genome.wustl.edu	37	chr1	247582326	247582326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	ggccgtgtggatcttcgctgCgatcaacaggagagaccttt	13	10	2	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	1	247582326	247582326	C	T	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.230	p.A77V	0.003	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	56	0	0	28	5	15.15	-	-	-	T	247582326	C	T	247582326	3	4	700	1	0	0	0	0	1	0	0	0	10550	768	27	1	232	1	NLRP3	1	247582326	Missense_Mutation	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09		247582326	1668295	1	60968										
C2orf78	0	genome.wustl.edu	37	chr2	74043504	74043504	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	ccacctgggaaggtcaagttGatacctttgccctttctgac	9	12	2	2			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	2	74043504	74043504	G	T	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.2154	p.L718F	0.779	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	77	0	0	23	18	43.9	-	-	-	T	74043504	G	T	74043504	3	4	700	1	0	0	0	0	1	0	0	0	2215	1281	45	2	2164	2	C2orf78	2	74043504	Missense_Mutation	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09		74043504	169155869	2	60969										
THSD7B	0	genome.wustl.edu	37	chr2	138033556	138033556	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	tctgtctggcagggaataacGggcagcagtgaagcctgtgg	16	8	2	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	2	138033556	138033556	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	silent	c.2460	p.T820	0.219	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	81	0	0	28	16	36.36	-	-	-	A	138033556	G	A	138033556	2	1	700	1	0	0	0	0	0	0	0	1	15975	1103	39	1		1	THSD7B	2	138033556	Silent	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	63990052	138033556	105165817	3	60970										
PDZD2	0	genome.wustl.edu	37	chr5	32088636	32088636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	cacaggccctcgtgtgcagaAgaaaccacagaagtcaccag	10	13	1	3			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	32088636	32088636	A	C	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.5082	p.E1694D	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	29	0	0	22	14	38.89	-	-	-	C	32088636	A	C	32088636	3	2	700	1	0	0	0	0	1	0	0	0	11774	69	3	5	5156	5	PDZD2	5	32088636	Missense_Mutation	SNP	A	TCGA-D8-A1X8-01A-11D-A14K-09		32088636	148826624	4	60971										
PLK2	0	genome.wustl.edu	37	chr5	57751415	57751415	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	accattgttgaaaaggacacCgacggtgtggtctgagagct	13	8	1	2			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	57751415	57751415	C	G	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	missense	c.1576	p.G526R	1.000	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	32	0	0	16	4	20	-	-	-	G	57751415	C	G	57751415	3	3	700	1	0	0	0	0	1	0	0	0	12170	652	23	3	497	3	PLK2	5	57751415	Missense_Mutation	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09	25662779	57751415	123163845	5	60972										
THBS4	0	genome.wustl.edu	37	chr5	79374937	79374937	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	gggaccttccatgtgaatacCcagacagatgatgactatgc	10	10	0	5			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	79374937	79374937	C	T	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	1	known	silent	c.2367	p.T789	0.278	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	64	0	0	32	6	15.79	-	-	-	T	79374937	C	T	79374937	2	4	700	1	0	0	0	0	0	0	0	1	15951	610	22	4		4	THBS4	5	79374937	Silent	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09	21623522	79374937	101540323	6	60973										
CAST	0	genome.wustl.edu	37	chr5	96100942	96100942	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	cagcagagtgacaaagacctCgatgatgccttggataaact	10	9	0	4			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	96100942	96100942	C	T	SNP	CAST	ENST00000484552	human	ensembl	69_37n	1	known	nonsense	c.925	p.R309*	0.006	pfam_Prot_inh_calpain	pfam_Prot_inh_calpain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CAST	HGNC	ENSG00000153113	99	0	0	37	20	35.09	-	-	-	T	96100942	C	T	96100942	4	4	700	1	0	0	0	0	0	1	0	0	2709	871	31	1	2176	1	CAST	5	96100942	Nonsense_Mutation	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09	16726005	96100942	84814318	7	60974										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769310	140769310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	gctcttcagcctggggctgcGcacgggcgaagtgcgcacag	16	13	2	0			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	140769310	140769310	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.1859	p.R620H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	24	0	0	14	7	33.33	-	-	-	A	140769310	G	A	140769310	3	1	700	1	0	0	0	0	1	0	0	0	11638	1087	38	1	1861	1	PCDHGB4	5	140769310	Missense_Mutation	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	44668368	140769310	40145950	8	60975										
EPDR1	0	genome.wustl.edu	37	chr7	37960286	37960286	+	Frame_Shift_Del	DEL	A	A	-													0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	cagtggcagcaggcagtggcAgcaggcagtggcccaggcag							TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	7	37960286	37960286	A	-	DEL	EPDR1	ENST00000559325	human	ensembl	69_37n	1	known	frame_shift_del	c.105	p.A36fs	0.042	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	27	0	0	18	4	17.39	-	-	-	-	37960286	A	-	37960286	7	5	700	1	0	1	0	1	0	0	0	0	5200	175	7	0	107	0	EPDR1	7	37960286	Frame_Shift_Del	DEL	A	TCGA-D8-A1X8-01A-11D-A14K-09		37960286	121178377	9	60976										
ABCA13	0	genome.wustl.edu	37	chr7	48450174	48450174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	agctgaagcgctgagtgaccGcgtggccgtcctccagcatg	14	13	0	3			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	7	48450174	48450174	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.12128	p.R4043H	0.469	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	92	0	0	20	8	28.57	-	-	-	A	48450174	G	A	48450174	3	1	700	1	0	0	0	0	1	0	0	0	31	1087	38	1	12115	1	ABCA13	7	48450174	Missense_Mutation	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	10489888	48450174	110688489	10	60977										
SERPINE1	0	genome.wustl.edu	37	chr7	100771746	100771746	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	tttggtgaagggtctgctgtGcaccatcccccatcctacgt	10	13	1	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	7	100771746	100771746	G	T	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	silent	c.72	p.V24	0.000	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	135	0	0	33	14	29.79	-	-	-	T	100771746	G	T	100771746	2	4	700	1	0	0	0	0	0	0	0	1	14199	1306	46	4		4	SERPINE1	7	100771746	Silent	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	52321572	100771746	58366917	11	60978										
ZNF483	0	genome.wustl.edu	37	chr9	114293154	114293154	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	tggttttctcccctttcctaGatccagtctctcaagattct	5	13	4	2			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	9	114293154	114293154	G	C	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	splice_site	c.413-1	e2-1	0.161	-	-	-	no_errors	ZNF483	HGNC	ENSG00000173258	81	0	0	21	11	34.38	-	-	-	C	114293154	G	C	114293154	5	2	700	1	0	0	0	0	0	0	1	0	18032	956	33	2	418	2	ZNF483	9	114293154	Splice_Site	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09		114293154	26920277	12	60979										
RRP12	0	genome.wustl.edu	37	chr10	99132555	99132555	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	gctttttccaggagactgttCaccaacttgtggccccgagg	11	12	1	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	10	99132555	99132555	C	T	SNP	RRP12	ENST00000370992	human	ensembl	69_37n	-1	known	silent	c.2187	p.V729	1.000	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749	31	0	0	30	10	25	-	-	-	T	99132555	C	T	99132555	2	4	700	1	0	0	0	0	0	0	0	1	13772	813	29	2		2	RRP12	10	99132555	Silent	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09		99132555	36402192	13	60980										
GXYLT1	0	genome.wustl.edu	37	chr12	42499714	42499714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	atggatgcctagcaaagcgaTtataccatcctattcgaggt	9	9	0	0			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	12	42499714	42499714	T	C	SNP	GXYLT1	ENST00000398675	human	ensembl	69_37n	-1	known	missense	c.770	p.N257S	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233	104	0	0	38	11	22.45	-	-	-	C	42499714	T	C	42499714	3	2	700	1	0	0	0	0	1	0	0	0	6954	1493	52	5	568	5	GXYLT1	12	42499714	Missense_Mutation	SNP	T	TCGA-D8-A1X8-01A-11D-A14K-09		42499714	91352181	14	60981										
SYNE2	0	genome.wustl.edu	37	chr14	64635628	64635628	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	aagtttctataaaccagacaAttgctgattcctatgtcacc	5	10	2	2			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	14	64635628	64635628	A	T	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.16939	p.I5647F	0.987	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	51	0	0	36	8	18.18	-	-	-	T	64635628	A	T	64635628	3	4	700	1	0	0	0	0	1	0	0	0	15538	101	4	5	17305	5	SYNE2	14	64635628	Missense_Mutation	SNP	A	TCGA-D8-A1X8-01A-11D-A14K-09		64635628	42713912	15	60982										
SEPT12	0	genome.wustl.edu	37	chr16	4829725	4829725	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	cacttggtcttccggcccagGacacacctcccgttcaccag	8	18	2	0			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	16	4829725	4829725	G	A	SNP	SEPT12	ENST00000268231	human	ensembl	69_37n	-1	known	silent	c.789	p.V263	0.995	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623	49	0	0	23	10	30.3	-	-	-	A	4829725	G	A	4829725	2	1	700	1	0	0	0	0	0	0	0	1	14150	1161	41	2		2	SEPT12	16	4829725	Silent	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09		4829725	85525028	16	60983										
PAFAH1B1	0	genome.wustl.edu	37	chr17	2573487	2573487	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	atgagactggagattttgaaCgaactcttaaaggacataca	9	6	1	3			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	2573487	2573487	C	T	SNP	PAFAH1B1	ENST00000397195	human	ensembl	69_37n	1	known	nonsense	c.430	p.R144*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Dynein_regulator,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168	51	0	0	35	17	32.69	-	-	-	T	2573487	C	T	2573487	4	4	700	1	0	0	0	0	0	1	0	0	11457	528	19	1	448	1	PAFAH1B1	17	2573487	Nonsense_Mutation	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09		2573487	78621723	17	60984										
MTMR4	0	genome.wustl.edu	37	chr17	56582889	56582889	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	aggtactgaaagctgttccgGatggcatggatgttggccat	14	7	0	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	56582889	56582889	G	T	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	silent	c.1047	p.I349	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	48	0	0	33	4	10.81	-	-	-	T	56582889	G	T	56582889	2	4	700	1	0	0	0	0	0	0	0	1	10018	1164	41	2		2	MTMR4	17	56582889	Silent	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	54009402	56582889	24612321	18	60985										
SGSH	0	genome.wustl.edu	37	chr17	78185893	78185893	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	ggaggctcacgtaggcctcgCtgacttggccccagcgtttt	13	13	1	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	78185893	78185893	C	A	SNP	SGSH	ENST00000326317	human	ensembl	69_37n	-1	known	missense	c.926	p.S309I	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	SGSH	HGNC	ENSG00000181523	14	0	0	23	9	28.12	-	-	-	A	78185893	C	A	78185893	3	1	700	1	0	0	0	0	1	0	0	0	14309	797	28	4	590	4	SGSH	17	78185893	Missense_Mutation	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09	21603004	78185893	3009317	19	60986										
SHANK1	0	genome.wustl.edu	37	chr19	51165693	51165693	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	ctgaccttgtgctccgaggcGggcagcagcgaggggctggg	19	11	0	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	51165693	51165693	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.6039	p.P2013	0.965	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	31	0	0	13	5	27.78	-	-	-	A	51165693	G	A	51165693	2	1	700	1	0	0	0	0	0	0	0	1	14353	1103	39	1		1	SHANK1	19	51165693	Silent	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09		51165693	7963290	20	60987										
SYT5	0	genome.wustl.edu	37	chr19	55687114	55687114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	ccccaaagtgagggttcagcGtctgccgatgcaccttggtc	12	13	2	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	55687114	55687114	G	A	SNP	SYT5	ENST00000354308	human	ensembl	69_37n	-1	known	missense	c.503	p.T168M	0.991	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990	161	0	0	21	9	30	-	-	-	A	55687114	G	A	55687114	3	1	700	1	0	0	0	0	1	0	0	0	15569	1145	40	1	677	1	SYT5	19	55687114	Missense_Mutation	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09	4521421	55687114	3441869	21	60988										
NCOA6	0	genome.wustl.edu	37	chr20	33328692	33328692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	aaggggagaaaccattgtggTtgactgtgaagagggaagag	17	3	0	5			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	20	33328692	33328692	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.5368	p.T1790A	0.948	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	37	0	0	31	12	27.91	-	-	-	C	33328692	T	C	33328692	3	2	700	1	0	0	0	0	1	0	0	0	10305	1725	60	5	843	5	NCOA6	20	33328692	Missense_Mutation	SNP	T	TCGA-D8-A1X8-01A-11D-A14K-09		33328692	29696828	22	60989										
SFI1	0	genome.wustl.edu	37	chr22	31953042	31953043	+	Frame_Shift_Ins	INS	-	-	A													0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	tttaggcaacggattatcttINSacggtgagtctgctcaactg							TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	22	31953042	31953043	-	A	INS	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	frame_shift_ins	c.659_660	p.R221fs	0.047:0.041	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	24	0	0	16	3	15.79	-	-	-	A	31953043	-	A	31953042	7	5	700	1	0	1	1	0	0	0	0	0	14244	1764	61	0	681	0	SFI1	22	31953042	Frame_Shift_Ins	INS	-	TCGA-D8-A1X8-01A-11D-A14K-09		31953042	19351524	23	60990										
FAM47C	0	genome.wustl.edu	37	chrX	37027408	37027408	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	gagtgcctgatctctgcctgGagcctcccaagtcacgcgta	11	14	2	1			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	37027408	37027408	G	C	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.925	p.E309Q	0.940	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	120	0	0	28	12	30	-	-	-	C	37027408	G	C	37027408	3	2	700	1	0	0	0	0	1	0	0	0	5617	1175	41	2	927	2	FAM47C	23	37027408	Missense_Mutation	SNP	G	TCGA-D8-A1X8-01A-11D-A14K-09		37027408	118243152	24	60991										
ZMYM3	0	genome.wustl.edu	37	chrX	70464640	70464640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.894616860845438	1.02686567164179	2.56716417910448	0.641791044776119	1	1	0	tacagtagccccagccctacCttcctcatggttcggggaag	10	14	1	0			TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	70464640	70464640	C	T	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	silent	c.3117	p.K1039	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	124	0	0	11	8	42.11	-	-	-	T	70464640	C	T	70464640	2	4	700	1	0	0	0	0	0	0	0	1	17797	695	24	4		4	ZMYM3	23	70464640	Silent	SNP	C	TCGA-D8-A1X8-01A-11D-A14K-09	33437232	70464640	84805920	25	60992										
RERE	0	genome.wustl.edu	37	chr1	8421833	8421833	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	caaacctcacctgcgtttttGtcttcttggagctggtcctg	9	12	3	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	8421833	8421833	G	C	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.2006	p.T669R	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	89	0	0	32	9	21.95	-	-	-	C	8421833	G	C	8421833	3	2	701	1	0	0	0	0	1	0	0	0	13314	1377	48	4	2722	4	RERE	1	8421833	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		8421833	240828788	1	60993										
MTMR11	0	genome.wustl.edu	37	chr1	149903191	149903191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cccccaagccgagtcaggaaGggatgtccagctgccaccca	11	16	1	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	149903191	149903191	G	T	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	silent	c.1251	p.P417	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	67	0	0	33	4	10.81	-	-	-	T	149903191	G	T	149903191	2	4	701	1	0	0	0	0	0	0	0	1	10012	987	35	4		4	MTMR11	1	149903191	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	141481358	149903191	99347430	2	60994										
APH1A	0	genome.wustl.edu	37	chr1	150240461	150240461	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agccgggcatctgaccggtcGgtcacatggaccaagatgaa	13	11	2	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	150240461	150240461	G	T	SNP	APH1A	ENST00000369109	human	ensembl	69_37n	-1	known	silent	c.180	p.T60	0.958	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1A	HGNC	ENSG00000117362	24	0	0	13	8	38.1	-	-	-	T	150240461	G	T	150240461	2	4	701	1	0	0	0	0	0	0	0	1	772	1103	39	3		3	APH1A	1	150240461	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	337270	150240461	99010160	3	60995										
DENND4B	0	genome.wustl.edu	37	chr1	153915527	153915527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cccggggcctggaggggccaGgtttgctgagtggctgtagg	20	9	0	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	153915527	153915527	G	T	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.397	p.L133M	1.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	53	0	0	23	11	32.35	-	-	-	T	153915527	G	T	153915527	3	4	701	1	0	0	0	0	1	0	0	0	4470	991	35	4	4197	4	DENND4B	1	153915527	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	3675066	153915527	95335094	4	60996										
CCT3	0	genome.wustl.edu	37	chr1	156287325	156287325	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgaagtcctcctctcgtgtaAtctcaatgtcagtctgtgtg	9	10	4	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	156287325	156287325	A	C	SNP	CCT3	ENST00000480049	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CCT3	HGNC	ENSG00000163468	69	0	0	30	22	42.31	-	-	-	C	156287325	A	C	156287325	5	2	701	1	0	0	0	0	0	0	1	0	2983	101	4	5	888	5	CCT3	1	156287325	Splice_Site	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	2371798	156287325	92963296	5	60997										
OR10T2	0	genome.wustl.edu	37	chr1	158368836	158368836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agaaatcaactccaaccccaGccttttgtttatgatgagtg	7	10	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	158368836	158368836	G	A	SNP	OR10T2	ENST00000334438	human	ensembl	69_37n	-1	known	silent	c.421	p.L141	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306	63	0	0	19	14	42.42	-	-	-	A	158368836	G	A	158368836	2	1	701	1	0	0	0	0	0	0	0	1	10992	962	34	4		4	OR10T2	1	158368836	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	2081511	158368836	90881785	6	60998										
SPTA1	0	genome.wustl.edu	37	chr1	158639531	158639531	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agccttgatgttctctgaatCataatggtcatcaccaatca	6	10	5	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	158639531	158639531	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1645	p.D549Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	90	0	0	36	14	28	-	-	-	A	158639531	C	A	158639531	3	1	701	1	0	0	0	0	1	0	0	0	15207	826	29	2	5774	2	SPTA1	1	158639531	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	270695	158639531	90611090	7	60999										
FMO1	0	genome.wustl.edu	37	chr1	171251333	171251333	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtagtgaaagttgaagatggCcaggcctcactgtacaagta	12	7	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	171251333	171251333	C	A	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	silent	c.1044	p.G348	0.984	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	52	0	0	19	10	34.48	-	-	-	A	171251333	C	A	171251333	2	1	701	1	0	0	0	0	0	0	0	1	6000	726	26	4		4	FMO1	1	171251333	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	12611802	171251333	77999288	8	61000										
CHRM3	0	genome.wustl.edu	37	chr1	240072278	240072278	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	acttggaccccatacaacatCatggttctggtgaacacctt	7	12	2	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	240072278	240072278	C	A	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	1	known	silent	c.1527	p.I509	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	47	0	0	28	5	15.15	-	-	-	A	240072278	C	A	240072278	2	1	701	1	0	0	0	0	0	0	0	1	3407	816	29	2		2	CHRM3	1	240072278	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	68820945	240072278	9178343	9	61001										
SDCCAG8	0	genome.wustl.edu	37	chr1	243419510	243419510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ggagaactctaccctggaggAgattctggggcagtatcaac	13	9	3	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	1	243419510	243419510	A	G	SNP	SDCCAG8	ENST00000366541	human	ensembl	69_37n	1	known	missense	c.35	p.E12G	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	39	0	0	12	8	40	-	-	-	G	243419510	A	G	243419510	3	3	701	1	0	0	0	0	1	0	0	0	14047	304	11	5	37	5	SDCCAG8	1	243419510	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	3347232	243419510	5831111	10	61002										
KIDINS220	0	genome.wustl.edu	37	chr2	8874805	8874805	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgtgcttctgaaaaggtgccAgtctccaaaattcatattca	7	9	4	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	2	8874805	8874805	A	G	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.3796	p.W1266R	1.000	superfamily_SAM/pointed	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	114	0	0	29	16	35.56	-	-	-	G	8874805	A	G	8874805	3	3	701	1	0	0	0	0	1	0	0	0	8323	188	7	5	1531	5	KIDINS220	2	8874805	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09		8874805	234324568	11	61003										
CNGA3	0	genome.wustl.edu	37	chr2	99013589	99013589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cgcctcctggctgagtacaaCgccacccagatgaagatgaa	10	13	0	5			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	2	99013589	99013589	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	69_37n	1	known	silent	c.1956	p.N652	0.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	22	0	0	4	10	71.43	-	-	-	T	99013589	C	T	99013589	2	4	701	1	0	0	0	0	0	0	0	1	3628	535	19	1		1	CNGA3	2	99013589	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	90138784	99013589	144185784	12	61004										
LCT	0	genome.wustl.edu	37	chr2	136579592	136579592	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	taggcaacctgacattacctTttcttggaacttgatgaaca	7	9	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	2	136579592	136579592	T	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.984	p.K328N	0.995	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	82	0	0	41	20	32.79	-	-	-	A	136579592	T	A	136579592	3	1	701	1	0	0	0	0	1	0	0	0	8747	1838	64	5	4851	5	LCT	2	136579592	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	37566003	136579592	106619781	13	61005										
PHOSPHO2	0	genome.wustl.edu	37	chr2	170557587	170557587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	aaaagcttcctattgaactaCgtgattcttatcgaaaagga	7	7	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	2	170557587	170557587	C	T	SNP	PHOSPHO2	ENST00000359744	human	ensembl	69_37n	1	known	missense	c.106	p.R36C	0.001	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO2	HGNC	ENSG00000144362	49	0	0	20	12	37.5	-	-	-	T	170557587	C	T	170557587	3	4	701	1	0	0	0	0	1	0	0	0	11931	536	19	1	108	1	PHOSPHO2	2	170557587	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	33977995	170557587	72641786	14	61006										
MLH1	0	genome.wustl.edu	37	chr3	37091999	37091999	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgaagtgcctggctccattcCaaactcctggaagtggactg	11	11	0	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	37091999	37091999	C	A	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	missense	c.2126	p.P709Q	0.052	NULL	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	49	0	0	25	13	34.21	-	-	-	A	37091999	C	A	37091999	3	1	701	1	0	0	0	0	1	0	0	0	9688	594	21	4	2200	4	MLH1	3	37091999	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		37091999	160930431	15	61007										
MYRIP	0	genome.wustl.edu	37	chr3	40192594	40192594	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ataatgtgaagagccgcttcAagcgctttggcagtgccaag	12	9	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	40192594	40192594	A	C	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.388	p.K130Q	1.000	superfamily_Znf_FYVE_PHD	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	38	0	0	13	8	38.1	-	-	-	C	40192594	A	C	40192594	3	2	701	1	0	0	0	0	1	0	0	0	10172	131	5	5	398	5	MYRIP	3	40192594	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	3100595	40192594	157829836	16	61008										
ZBTB47	0	genome.wustl.edu	37	chr3	42699991	42699991	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ttccactcactcttcacccaGaacaagcagctgcagcgtgt	7	15	3	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	42699991	42699991	G	C	SNP	ZBTB47	ENST00000232974	human	ensembl	69_37n	1	known	missense	c.144	p.Q48H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB47	HGNC	ENSG00000114853	38	0	0	16	11	40.74	-	-	-	C	42699991	G	C	42699991	3	2	701	1	0	0	0	0	1	0	0	0	17644	933	33	2	146	2	ZBTB47	3	42699991	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	2507397	42699991	155322439	17	61009										
ITIH1	0	genome.wustl.edu	37	chr3	52821620	52821620	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ttctacagagatgctgggacCcagaaggagtaagtggcagc	14	8	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	52821620	52821620	C	A	SNP	ITIH1	ENST00000273283	human	ensembl	69_37n	1	known	missense	c.1916	p.P639H	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	78	0	0	36	18	33.33	-	-	-	A	52821620	C	A	52821620	3	1	701	1	0	0	0	0	1	0	0	0	7957	623	22	4	1978	4	ITIH1	3	52821620	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	10121629	52821620	145200810	18	61010										
TKT	0	genome.wustl.edu	37	chr3	53269083	53269083	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ggcccaggcgattgatgtctAgaatggccacaaggttgtcc	13	10	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	53269083	53269083	A	T	SNP	TKT	ENST00000423525	human	ensembl	69_37n	-1	known	missense	c.545	p.L182Q	0.997	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931	29	0	0	10	10	50	-	-	-	T	53269083	A	T	53269083	3	4	701	1	0	0	0	0	1	0	0	0	16029	420	15	5	1366	5	TKT	3	53269083	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	447463	53269083	144753347	19	61011										
FOXP1	0	genome.wustl.edu	37	chr3	71026978	71026978	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ggcaaaaggtggagtatctaCctgacgaaatgggcacgttg	14	7	1	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	71026978	71026978	C	A	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	splice_site	c.1348+1	e10+1	1.000	-	-	-	no_errors	FOXP1	HGNC	ENSG00000114861	80	0	0	39	26	40	-	-	-	A	71026978	C	A	71026978	5	1	701	1	0	0	0	0	0	0	1	0	6074	521	18	4	712	4	FOXP1	3	71026978	Splice_Site	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	17757895	71026978	126995452	20	61012										
ESYT3	0	genome.wustl.edu	37	chr3	138186958	138186958	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	accccacagtggtttgtcctGaatgacacaaccagcgggcg	11	13	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	138186958	138186958	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	69_37n	1	known	silent	c.1230	p.L410	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	51	0	0	18	9	33.33	-	-	-	A	138186958	G	A	138186958	2	1	701	1	0	0	0	0	0	0	0	1	5303	1277	45	2		2	ESYT3	3	138186958	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	67159980	138186958	59835472	21	61013										
TRIM42	0	genome.wustl.edu	37	chr3	140401895	140401895	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gacaacaaattgctctgcacCttctgcaagttctctttcca	5	13	3	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	140401895	140401895	C	G	SNP	TRIM42	ENST00000286349	human	ensembl	69_37n	1	known	silent	c.933	p.T311	0.166	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	89	0	0	27	13	32.5	-	-	-	G	140401895	C	G	140401895	2	3	701	1	0	0	0	0	0	0	0	1	16613	668	24	4		4	TRIM42	3	140401895	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	2214937	140401895	57620535	22	61014										
TFDP2	0	genome.wustl.edu	37	chr3	141678678	141678678	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtcaaaattgaaaagatactCaaacctgcatcaggaaacaa	6	8	3	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	141678678	141678678	C	G	SNP	TFDP2	ENST00000489671	human	ensembl	69_37n	-1	known	missense	c.889	p.E297Q	1.000	pfam_Transc_factor_DP_C,pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP2	HGNC	ENSG00000114126	50	0	0	24	14	36.84	-	-	-	G	141678678	C	G	141678678	3	3	701	1	0	0	0	0	1	0	0	0	15893	835	29	2	463	2	TFDP2	3	141678678	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	1276783	141678678	56343752	23	61015										
CCDC39	0	genome.wustl.edu	37	chr3	180334625	180334625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tatcgatacctgtttggtcaCtctttctaattttggcttct	6	9	4	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	3	180334625	180334625	C	A	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	missense	c.2395	p.V799L	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	186	0	0	55	37	39.78	-	-	-	A	180334625	C	A	180334625	3	1	701	1	0	0	0	0	1	0	0	0	2837	565	20	4	446	4	CCDC39	3	180334625	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	38655947	180334625	17687805	24	61016										
UGT2B4	0	genome.wustl.edu	37	chr4	70346546	70346546	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tttatggcgcatgacaaattCaatccagaagactgctcgat	8	9	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	4	70346546	70346546	C	A	SNP	UGT2B4	ENST00000305107	human	ensembl	69_37n	-1	known	nonsense	c.1393	p.E465*	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096	59	0	0	33	20	37.74	-	-	-	A	70346546	C	A	70346546	4	1	701	1	0	0	0	0	0	1	0	0	17058	835	29	2	197	2	UGT2B4	4	70346546	Nonsense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		70346546	120807730	25	61017										
DSPP	0	genome.wustl.edu	37	chr4	88535974	88535974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gatagtagtgacagcagtaaTagtaacagcagcgatagtga	12	5	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	4	88535974	88535974	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.2160	p.N720	0.729	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	111	0	0	82	51	38.35	-	-	-	C	88535974	T	C	88535974	2	2	701	1	0	0	0	0	0	0	0	1	4817	1403	49	5		5	DSPP	4	88535974	Silent	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	18189428	88535974	102618302	26	61018										
FAM13B	0	genome.wustl.edu	37	chr5	137289986	137289986	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tcttccaaggggtgatgattCattcttccagcttgtggaga	11	8	3	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	5	137289986	137289986	C	G	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.1521	p.M507I	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	22	0	0	13	5	27.78	-	-	-	G	137289986	C	G	137289986	3	3	701	1	0	0	0	0	1	0	0	0	5493	826	29	2	1266	2	FAM13B	5	137289986	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		137289986	43625274	27	61019										
ANXA6	0	genome.wustl.edu	37	chr5	150508981	150508981	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgctgaccttgatcatgctgTagagggacttctcatacttg	10	9	2	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	5	150508981	150508981	T	C	SNP	ANXA6	ENST00000354546	human	ensembl	69_37n	-1	known	missense	c.905	p.Y302C	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043	52	0	0	43	13	23.21	-	-	-	C	150508981	T	C	150508981	3	2	701	1	0	0	0	0	1	0	0	0	721	1638	57	5	1176	5	ANXA6	5	150508981	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	13218995	150508981	30406279	28	61020										
TREML4	0	genome.wustl.edu	37	chr6	41196189	41196189	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gcctggggtggggtccacacCtgctgcttccacctgtgctg	14	14	0	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	6	41196189	41196189	C	A	SNP	TREML4	ENST00000341495	human	ensembl	69_37n	1	known	silent	c.24	p.T8	0.315	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TREML4	HGNC	ENSG00000188056	52	0	0	29	13	30.95	-	-	-	A	41196189	C	A	41196189	2	1	701	1	0	0	0	0	0	0	0	1	16570	668	24	4		4	TREML4	6	41196189	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		41196189	129918878	29	61021										
COQ3	0	genome.wustl.edu	37	chr6	99842022	99842022	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cagcactcttaaaaaccaacCcccggaggagcccagcttac	7	16	1	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	6	99842022	99842022	C	A	SNP	COQ3	ENST00000254759	human	ensembl	69_37n	-1	known	missense	c.34	p.G12C	0.000	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_Mycolic_cyclopropane_synthase,pfam_UbiE/COQ5_MeTrFase,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_SAM-MeTfrase_NodS-related,tigrfam_UbiG_MeTrfase	-	no_errors	COQ3	HGNC	ENSG00000132423	30	0	0	10	8	44.44	-	-	-	A	99842022	C	A	99842022	3	1	701	1	0	0	0	0	1	0	0	0	3776	623	22	4	1103	4	COQ3	6	99842022	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	58645833	99842022	71273045	30	61022										
HACE1	0	genome.wustl.edu	37	chr6	105224704	105224704	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tcacgcacaacaccttgaccCtgaattcaagaaataaaatt	4	11	2	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	6	105224704	105224704	C	A	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	splice_site	c.1777-1	e17-1	1.000	-	-	-	no_errors	HACE1	HGNC	ENSG00000085382	48	0	0	5	15	75	-	-	-	A	105224704	C	A	105224704	5	1	701	1	0	0	0	0	0	0	1	0	6991	695	24	4	985	4	HACE1	6	105224704	Splice_Site	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	5382682	105224704	65890363	31	61023										
TUBE1	0	genome.wustl.edu	37	chr6	112395935	112395935	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tctaggaggaatgttaacatCtgtcagtgtatacagaggtg	12	5	3	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	6	112395935	112395935	C	A	SNP	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	missense	c.931	p.D311Y	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	38	0	0	5	5	50	-	-	-	A	112395935	C	A	112395935	3	1	701	1	0	0	0	0	1	0	0	0	16860	913	32	2	512	2	TUBE1	6	112395935	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	7171231	112395935	58719132	32	61024										
HIBADH	0	genome.wustl.edu	37	chr7	27578011	27578011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	caatcatactaatagctaacAgcatgttgttgcagatcttt	6	8	2	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	27578011	27578011	A	G	SNP	HIBADH	ENST00000265395	human	ensembl	69_37n	-1	known	missense	c.644	p.L215P	1.000	superfamily_6-PGluconate_DH_C-like,tigrfam_IsoBut3OH_DH	pfam_6PGDH_NADP-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,tigrfam_IsoBut3OH_DH	-	no_errors	HIBADH	HGNC	ENSG00000106049	102	0	0	28	47	62.67	-	-	-	G	27578011	A	G	27578011	3	3	701	1	0	0	0	0	1	0	0	0	7150	188	7	5	378	5	HIBADH	7	27578011	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09		27578011	131560652	33	61025										
CHN2	0	genome.wustl.edu	37	chr7	29440430	29440430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	acgtcacacatgaagaacacAcagcggtggaaaaggtgagc	12	9	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	29440430	29440430	A	G	SNP	CHN2	ENST00000539406	human	ensembl	69_37n	1	known	missense	c.787	p.T263A	0.010	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN2	HGNC	ENSG00000106069	33	0	0	19	7	26.92	-	-	-	G	29440430	A	G	29440430	3	3	701	1	0	0	0	0	1	0	0	0	3392	159	6	5	584	5	CHN2	7	29440430	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	1862419	29440430	129698233	34	61026										
GLI3	0	genome.wustl.edu	37	chr7	42079679	42079679	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gaccataggagccacttgctGaagagctgctacgggaatta	12	9	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	42079679	42079679	G	T	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	nonsense	c.986	p.S329*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	74	0	0	66	15	18.52	-	-	-	T	42079679	G	T	42079679	4	4	701	1	0	0	0	0	0	1	0	0	6491	1294	45	2	3792	2	GLI3	7	42079679	Nonsense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	12639249	42079679	117058984	35	61027										
OGDH	0	genome.wustl.edu	37	chr7	44735647	44735647	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gaaatttccaagtatgataaGatctgtgaggaagcttttgc	10	5	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	44735647	44735647	G	C	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.1692	p.K564N	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	44	0	0	13	21	61.76	-	-	-	C	44735647	G	C	44735647	3	2	701	1	0	0	0	0	1	0	0	0	10912	933	33	2	1911	2	OGDH	7	44735647	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	2655968	44735647	114403016	36	61028										
SEMA3D	0	genome.wustl.edu	37	chr7	84628938	84628938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtttgggctgctaaggatttGgatgtagtctttgtatctca	12	5	2	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	84628938	84628938	G	T	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	missense	c.2152	p.Q718K	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	93	0	0	56	12	17.39	-	-	-	T	84628938	G	T	84628938	3	4	701	1	0	0	0	0	1	0	0	0	14115	1357	47	4	185	4	SEMA3D	7	84628938	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	39893291	84628938	74509725	37	61029										
COL1A2	0	genome.wustl.edu	37	chr7	94057753	94057753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agctccaaggacaagaaacaCgtctggctaggagaaactat	10	9	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	94057753	94057753	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	silent	c.3675	p.H1225	0.861	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	49	0	0	31	8	20.51	-	-	-	T	94057753	C	T	94057753	2	4	701	1	0	0	0	0	0	0	0	1	3708	535	19	1		1	COL1A2	7	94057753	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	9428815	94057753	65080910	38	61030										
NRCAM	0	genome.wustl.edu	37	chr7	107834872	107834872	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cttcctttagctcctttaaaCcttcattacagaaattatca	2	11	2	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	107834872	107834872	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	nonsense	c.1464	p.W488*	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	14	0	0	12	8	40	-	-	-	T	107834872	C	T	107834872	4	4	701	1	0	0	0	0	0	1	0	0	10717	521	18	4	2552	4	NRCAM	7	107834872	Nonsense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	13777119	107834872	51303791	39	61031										
NOBOX	0	genome.wustl.edu	37	chr7	144096125	144096125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cagcagtggcatcagttgggGggtgtggacagggccaaggg	20	7	1	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	7	144096125	144096125	G	T	SNP	NOBOX	ENST00000467773	human	ensembl	69_37n	-1	known	missense	c.1387	p.P463T	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	NOBOX	HGNC	ENSG00000106410	8	0	0	9	6	40	-	-	-	T	144096125	G	T	144096125	3	4	701	1	0	0	0	0	1	0	0	0	10584	1232	43	4	700	4	NOBOX	7	144096125	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	36261253	144096125	15042538	40	61032										
OR13J1	0	genome.wustl.edu	37	chr9	35870156	35870156	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gatgacaggaggtggaccagCatcagaggcacaaaggtggg	17	7	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	9	35870156	35870156	C	A	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.243	p.M81I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	53	0	0	47	24	33.8	-	-	-	A	35870156	C	A	35870156	3	1	701	1	0	0	0	0	1	0	0	0	11017	710	25	4	698	4	OR13J1	9	35870156	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		35870156	105343275	41	61033										
PITRM1	0	genome.wustl.edu	37	chr10	3181120	3181120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtctgaaggagcgacaggagCatctacggttgagaagacag	15	7	2	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	10	3181120	3181120	C	T	SNP	PITRM1	ENST00000380989	human	ensembl	69_37n	-1	known	missense	c.2896	p.A966T	0.996	superfamily_Metalloenz_metal-bd	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	-	no_errors	PITRM1	HGNC	ENSG00000107959	69	0	0	41	15	26.32	-	-	-	T	3181120	C	T	3181120	3	4	701	1	0	0	0	0	1	0	0	0	12027	710	25	4	232	4	PITRM1	10	3181120	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		3181120	132353627	42	61034										
P4HA1	0	genome.wustl.edu	37	chr10	74769591	74769591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgttgccaactagcactggaCaggctgcatgccgtgtacta	11	11	0	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	10	74769591	74769591	C	A	SNP	P4HA1	ENST00000263556	human	ensembl	69_37n	-1	known	missense	c.1508	p.C503F	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884	59	0	0	32	12	27.27	-	-	-	A	74769591	C	A	74769591	3	1	701	1	0	0	0	0	1	0	0	0	11429	478	17	4	104	4	P4HA1	10	74769591	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	71588471	74769591	60765156	43	61035										
OR52B2	0	genome.wustl.edu	37	chr11	6190716	6190716	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tggtggcactgccacataaaGattggccagcaagatatgga	12	8	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	11	6190716	6190716	G	T	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	missense	c.841	p.L281I	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	47	0	0	15	7	31.82	-	-	-	T	6190716	G	T	6190716	3	4	701	1	0	0	0	0	1	0	0	0	11184	942	33	2	133	2	OR52B2	11	6190716	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		6190716	128815800	44	61036										
SOX6	0	genome.wustl.edu	37	chr11	16007910	16007910	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtggatcttgcttagccgggCctgctcttcataataaggtt	11	9	3	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	11	16007910	16007910	C	T	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.2023	p.A675T	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	122	0	0	59	46	43.81	-	-	-	T	16007910	C	T	16007910	3	4	701	1	0	0	0	0	1	0	0	0	15044	739	26	4	471	4	SOX6	11	16007910	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	9817194	16007910	118998606	45	61037										
ZNF408	0	genome.wustl.edu	37	chr11	46726161	46726161	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gggcacccagccgcatggctAcctggccaagaagttacaca	11	14	0	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	11	46726161	46726161	A	T	SNP	ZNF408	ENST00000311764	human	ensembl	69_37n	1	known	missense	c.911	p.Y304F	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213	25	0	0	8	5	38.46	-	-	-	T	46726161	A	T	46726161	3	4	701	1	0	0	0	0	1	0	0	0	17984	391	14	5	961	5	ZNF408	11	46726161	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	30718251	46726161	88280355	46	61038										
ATL3	0	genome.wustl.edu	37	chr11	63420031	63420031	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	caaatgccccctgggtatccAtcagaacaactgcaacctaa	6	14	1	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	11	63420031	63420031	A	T	SNP	ATL3	ENST00000332645	human	ensembl	69_37n	-1	known	missense	c.503	p.M168K	1.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL3	HGNC	ENSG00000184743	66	0	0	25	11	30.56	-	-	-	T	63420031	A	T	63420031	3	4	701	1	0	0	0	0	1	0	0	0	1112	217	8	5	1243	5	ATL3	11	63420031	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	16693870	63420031	71586485	47	61039										
TIMM8B	0	genome.wustl.edu	37	chr11	111957438	111957438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cgcttcatcggcttcgcccaGctccgccattgttcgcctca	8	18	2	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	11	111957438	111957438	G	T	SNP	TIMM8B	ENST00000541231	human	ensembl	69_37n	-1	known	missense	c.55	p.L19M	0.987	NULL	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM8B	HGNC	ENSG00000150779	16	0	0	1	6	85.71	-	-	-	T	111957438	G	T	111957438	3	4	701	1	0	0	0	0	1	0	0	0	16010	962	34	4	249	4	TIMM8B	11	111957438	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	48537407	111957438	23049078	48	61040										
MAP1LC3B2	0	genome.wustl.edu	37	chr12	117014080	117014080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gaagatggattcctgtacatGgtctgtgcctcccaggagac	12	10	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	12	117014080	117014080	G	T	SNP	MAP1LC3B2	ENST00000306985	human	ensembl	69_37n	1	known	missense	c.333	p.M111I	1.000	pfam_Atg8_ubiquitin-like,pfam_Autophagy-rel_prot_12	pfam_Atg8_ubiquitin-like,pfam_Autophagy-rel_prot_12	-	no_errors	MAP1LC3B2	HGNC	ENSG00000171471	79	0	0	57	11	16.18	-	-	-	T	117014080	G	T	117014080	3	4	701	1	0	0	0	0	1	0	0	0	9303	1348	47	4	335	4	MAP1LC3B2	12	117014080	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		117014080	16837815	49	61041										
TMEM132B	0	genome.wustl.edu	37	chr12	126138566	126138566	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agtaccaacaaaagcacaacCccccagtctcccatggaagg	7	15	1	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	12	126138566	126138566	C	G	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	silent	c.2547	p.T849	0.779	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	33	0	0	15	6	28.57	-	-	-	G	126138566	C	G	126138566	2	3	701	1	0	0	0	0	0	0	0	1	16141	610	22	4		4	TMEM132B	12	126138566	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	9124486	126138566	7713329	50	61042										
CTAGE5	0	genome.wustl.edu	37	chr14	39818099	39818099	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ggacctcctttccccccaccTcctccaggagccatgtttgg	8	18	0	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	14	39818099	39818099	T	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	silent	c.2181	p.P727	0.922	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	36	0	0	28	9	21.95	-	-	-	A	39818099	T	A	39818099	2	1	701	1	0	0	0	0	0	0	0	1	4026	1538	54	5		5	CTAGE5	14	39818099	Silent	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09		39818099	67531441	51	61043										
FOS	0	genome.wustl.edu	37	chr14	75748073	75748073	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gcccaccgcaagggcagcagCagcaatgagccttcctctga	11	15	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	14	75748073	75748073	C	T	SNP	FOS	ENST00000303562	human	ensembl	69_37n	1	known	silent	c.1089	p.S363	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOS	HGNC	ENSG00000170345	10	0	0	7	7	50	-	-	-	T	75748073	C	T	75748073	2	4	701	1	0	0	0	0	0	0	0	1	6031	709	25	4		4	FOS	14	75748073	Silent	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	35929974	75748073	31601467	52	61044										
RIN3	0	genome.wustl.edu	37	chr14	93119023	93119023	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agcttgggggtgtctgtcatGgccaccgaccaggactccta	13	12	2	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	14	93119023	93119023	G	T	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	missense	c.1629	p.M543I	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	12	0	0	10	5	33.33	-	-	-	T	93119023	G	T	93119023	3	4	701	1	0	0	0	0	1	0	0	0	13459	1348	47	4	1651	4	RIN3	14	93119023	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	17370950	93119023	14230517	53	61045										
TECPR2	0	genome.wustl.edu	37	chr14	102843158	102843158	+	Frame_Shift_Del	DEL	A	A	-													0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tccagaagggtttccgctctAtcgtggtctatctcacggcc							TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	14	102843158	102843158	A	-	DEL	TECPR2	ENST00000359520	human	ensembl	69_37n	1	known	frame_shift_del	c.100	p.I34fs	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	44	0	0	17	12	40	-	-	-	-	102843158	A	-	102843158	7	5	701	1	0	1	0	1	0	0	0	0	15839	449	16	0	102	0	TECPR2	14	102843158	Frame_Shift_Del	DEL	A	TCGA-D8-A1X9-01A-12D-A159-09	9724135	102843158	4506382	54	61046										
AHNAK2	0	genome.wustl.edu	37	chr14	105412985	105412985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cagagacacctccacgtcggGggccgtcacctccgccttgg	12	17	1	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	14	105412985	105412985	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.8803	p.P2935S	0.014	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	56	0	0	37	28	43.08	-	-	-	A	105412985	G	A	105412985	3	1	701	1	0	0	0	0	1	0	0	0	415	1232	43	4	8588	4	AHNAK2	14	105412985	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	2569827	105412985	1936555	55	61047										
CEP152	0	genome.wustl.edu	37	chr15	49059319	49059319	+	Nonsense_Mutation	SNP	T	T	A													0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agtcaattctagattatcctTctctctgcacacttctaggt							TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	15	49059319	49059319	T	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	nonsense	c.2218	p.K740*	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	62	0	0	31	18	36.73	-	-	-	A	49059319	T	A	49059319	4	1	701	1	0	0	0	0	0	1	0	0	3277	1792	62	5	2786	5	CEP152	15	49059319	Nonsense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09		49059319	53472073	56	61048	453	2								
CEP152	0	genome.wustl.edu	37	chr15	49059320	49059320	+	Missense_Mutation	SNP	C	C	A													0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gtcaattctagattatccttCtctctgcacacttctaggta							TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	15	49059320	49059320	C	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.2217	p.E739D	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	61	0	0	31	18	36.73	-	-	-	A	49059320	C	A	49059320	3	1	701	1	0	0	0	0	1	0	0	0	3277	912	32	2	2787	2	CEP152	15	49059320	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	1	49059320	53472072	57	61049	453	2								
FSD2	0	genome.wustl.edu	37	chr15	83451590	83451590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cgtgacacatctcctctattGtttccatcagttctttgcaa	5	12	4	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	15	83451590	83451590	G	T	SNP	FSD2	ENST00000334574	human	ensembl	69_37n	-1	known	missense	c.923	p.T308K	0.938	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD2	HGNC	ENSG00000186628	176	0	0	99	32	24.43	-	-	-	T	83451590	G	T	83451590	3	4	701	1	0	0	0	0	1	0	0	0	6120	1377	48	4	1366	4	FSD2	15	83451590	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	34392270	83451590	19079802	58	61050										
SV2B	0	genome.wustl.edu	37	chr15	91769862	91769862	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ttggccctgatggccgatggGgtggaagtgttcgtggtgag	19	6	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	15	91769862	91769862	G	T	SNP	SV2B	ENST00000330276	human	ensembl	69_37n	1	known	silent	c.369	p.G123	0.593	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2B	HGNC	ENSG00000185518	84	0	0	32	16	33.33	-	-	-	T	91769862	G	T	91769862	2	4	701	1	0	0	0	0	0	0	0	1	15509	1219	43	4		4	SV2B	15	91769862	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	8318272	91769862	10761530	59	61051										
HSD3B7	0	genome.wustl.edu	37	chr16	30997512	30997512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agtcccaagaccatccatgaGgtcaacgtgcagggtgagga	13	10	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	16	30997512	30997512	G	A	SNP	HSD3B7	ENST00000297679	human	ensembl	69_37n	1	known	silent	c.309	p.E103	0.211	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377	34	0	0	10	4	28.57	-	-	-	A	30997512	G	A	30997512	2	1	701	1	0	0	0	0	0	0	0	1	7443	991	35	4		4	HSD3B7	16	30997512	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		30997512	59357241	60	61052										
BCKDK	0	genome.wustl.edu	37	chr16	31121625	31121625	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tcttggcagagggcctacgtGagagccggaagcacatagag	15	9	1	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	16	31121625	31121625	G	A	SNP	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	missense	c.523	p.E175K	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	35	0	0	21	4	16	-	-	-	A	31121625	G	A	31121625	3	1	701	1	0	0	0	0	1	0	0	0	1365	1291	45	2	541	2	BCKDK	16	31121625	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	124113	31121625	59233128	61	61053										
PDPR	0	genome.wustl.edu	37	chr16	70162893	70162893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tcccttctgagatcatctccCccaagaaagtggccgagctt	8	14	3	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	16	70162893	70162893	C	G	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.475	p.P159A	1.000	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	76	0	0	50	19	27.54	-	-	-	G	70162893	C	G	70162893	3	3	701	1	0	0	0	0	1	0	0	0	11762	623	22	4	489	4	PDPR	16	70162893	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	39041268	70162893	20191860	62	61054										
CTU2	0	genome.wustl.edu	37	chr16	88773618	88773618	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agccggagatgccttctgcaGgtgaggcctggaggtggctg	18	9	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	16	88773618	88773618	G	T	SNP	CTU2	ENST00000567949	human	ensembl	69_37n	1	known	missense	c.143	p.R48M	1.000	NULL	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177	84	0	0	21	20	48.78	-	-	-	T	88773618	G	T	88773618	3	4	701	1	0	0	0	0	1	0	0	0	4079	1014	35	4	149	4	CTU2	16	88773618	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	18610725	88773618	1581135	63	61055										
CCDC144B	0	genome.wustl.edu	37	chr17	18498077	18498077	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ttcatcagcaacataaaattCtcataaacagagtgagacaa	5	8	3	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	18498077	18498077	C	G	SNP	CCDC144B	ENST00000425214	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.063	-	-	-	no_errors	CCDC144B	HGNC	ENSG00000154874	73	0	0	7	39	84.78	-	-	-	G	18498077	C	G	18498077	1	3	701	0	1	0	0	0	0	0	0	0	2803	912	32	2		2	CCDC144B	17	18498077	RNA	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09		18498077	62697133	64	61056										
LRRC37B	0	genome.wustl.edu	37	chr17	30349516	30349516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ctcagcctccagacccggggCttgccataactccagaaccc	8	18	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	30349516	30349516	C	T	SNP	LRRC37B	ENST00000341671	human	ensembl	69_37n	1	known	missense	c.1351	p.L451F	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	86	0	0	47	31	39.74	-	-	-	T	30349516	C	T	30349516	3	4	701	1	0	0	0	0	1	0	0	0	9060	797	28	4	1353	4	LRRC37B	17	30349516	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	11851439	30349516	50845694	65	61057										
PITPNC1	0	genome.wustl.edu	37	chr17	65548392	65548392	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gcaaactgcctagttgggctAgagctgttgtccccaaaata	10	10	0	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	65548392	65548392	A	T	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	1	known	nonsense	c.217	p.R73*	0.839	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	53	0	0	31	27	46.55	-	-	-	T	65548392	A	T	65548392	4	4	701	1	0	0	0	0	0	1	0	0	12023	412	15	5	227	5	PITPNC1	17	65548392	Nonsense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	35198876	65548392	15646818	66	61058										
KIF19	0	genome.wustl.edu	37	chr17	72338053	72338053	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ccaatggaggatcccgacgaCatcctgcgggcgcatcgctc	12	15	0	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	72338053	72338053	C	A	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	missense	c.159	p.D53E	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	32	0	0	30	7	18.92	-	-	-	A	72338053	C	A	72338053	3	1	701	1	0	0	0	0	1	0	0	0	8334	477	17	4	169	4	KIF19	17	72338053	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	6789661	72338053	8857157	67	61059										
EIF4A3	0	genome.wustl.edu	37	chr17	78113839	78113839	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ctggagtgcccgcgacaacaTgctgtccgtaatccagcttc	10	14	0	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	78113839	78113839	T	A	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.473	p.H158L	0.999	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	35	0	0	35	10	22.22	-	-	-	A	78113839	T	A	78113839	3	1	701	1	0	0	0	0	1	0	0	0	5063	1464	51	5	794	5	EIF4A3	17	78113839	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	5775786	78113839	3081371	68	61060										
SLC38A10	0	genome.wustl.edu	37	chr17	79220110	79220110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ctgcgaggcgctcctctgggCccccggcttccctggcgggg	16	17	1	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	17	79220110	79220110	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.2606	p.G869D	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	18	0	0	22	5	18.52	-	-	-	T	79220110	C	T	79220110	3	4	701	1	0	0	0	0	1	0	0	0	14691	739	26	4	757	4	SLC38A10	17	79220110	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	1106271	79220110	1975100	69	61061										
SMAD4	0	genome.wustl.edu	37	chr18	48604754	48604754	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	aagaaacaccttgctggattGaaattcacttacaccgggcc	8	11	1	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	18	48604754	48604754	G	T	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	1	known	nonsense	c.1576	p.E526*	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	41	0	0	7	5	41.67	-	-	-	T	48604754	G	T	48604754	4	4	701	1	0	0	0	0	0	1	0	0	14849	1291	45	2	1618	2	SMAD4	18	48604754	Nonsense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		48604754	29472494	70	61062										
OR7C1	0	genome.wustl.edu	37	chr19	14910104	14910104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgaaggggttcagcatggggGtgaccatggtgtacatcact	15	7	2	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	19	14910104	14910104	G	T	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	missense	c.845	p.T282N	0.461	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	53	0	0	25	20	44.44	-	-	-	T	14910104	G	T	14910104	3	4	701	1	0	0	0	0	1	0	0	0	11290	1261	44	4	119	4	OR7C1	19	14910104	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		14910104	44218879	71	61063										
COMP	0	genome.wustl.edu	37	chr19	18897364	18897364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gatccgggttgctcttctggGgacagttgtcacaggcatcc	13	11	3	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	19	18897364	18897364	G	A	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.1232	p.P411L	0.998	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	61	0	0	24	15	38.46	-	-	-	A	18897364	G	A	18897364	3	1	701	1	0	0	0	0	1	0	0	0	3754	1232	43	4	1077	4	COMP	19	18897364	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	3987260	18897364	40231619	72	61064										
RYR1	0	genome.wustl.edu	37	chr19	39038978	39038978	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	cttcgacatgttcctgaaacTcaaggacattgtgggctctg	10	10	2	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	19	39038978	39038978	T	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.12200	p.L4067H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	60	0	0	44	14	24.14	-	-	-	A	39038978	T	A	39038978	3	1	701	1	0	0	0	0	1	0	0	0	13854	1551	54	5	12554	5	RYR1	19	39038978	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	20141614	39038978	20090005	73	61065										
DMRTC2	0	genome.wustl.edu	37	chr19	42355733	42355733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ctctgttgctctgcatattgGccgtctggggtccatctccc	10	14	4	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	19	42355733	42355733	G	T	SNP	DMRTC2	ENST00000269945	human	ensembl	69_37n	1	known	missense	c.1073	p.G358V	0.996	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025	49	0	0	26	10	27.78	-	-	-	T	42355733	G	T	42355733	3	4	701	1	0	0	0	0	1	0	0	0	4627	1203	42	4	1103	4	DMRTC2	19	42355733	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	3316755	42355733	16773250	74	61066										
E2F1	0	genome.wustl.edu	37	chr20	32268216	32268216	+	Frame_Shift_Del	DEL	G	G	-													0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	agtttccaggtccagcctccGcttcacctgtggcgaaaacg							TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	20	32268216	32268216	G	-	DEL	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	frame_shift_del	c.268	p.R90fs	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	42	0	0	12	2	14.29	-	-	-	-	32268216	G	-	32268216	7	5	701	1	0	1	0	1	0	0	0	0	4901	1086	38	0	1069	0	E2F1	20	32268216	Frame_Shift_Del	DEL	G	TCGA-D8-A1X9-01A-12D-A159-09		32268216	30757304	75	61067										
TSHZ2	0	genome.wustl.edu	37	chr20	51870893	51870893	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	ccacatgattaaaacaaaacAttaccaaaaagtgcctttga	4	9	0	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	20	51870893	51870893	A	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.896	p.H299L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	32	0	0	25	10	28.57	-	-	-	T	51870893	A	T	51870893	3	4	701	1	0	0	0	0	1	0	0	0	16720	217	8	5	902	5	TSHZ2	20	51870893	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	19602677	51870893	11154627	76	61068										
DGCR8	0	genome.wustl.edu	37	chr22	20074049	20074049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gaaggatgaggagaatgagcTggatcaggaaaagagagtgg	18	2	1	4			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	22	20074049	20074049	T	G	SNP	DGCR8	ENST00000351989	human	ensembl	69_37n	1	known	missense	c.563	p.L188R	1.000	NULL	pfam_Ds-RNA-bd,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Ds-RNA-bd,pfscan_WW_Rsp5_WWP,pfscan_Ds-RNA-bd	-	no_errors	DGCR8	HGNC	ENSG00000128191	45	0	0	11	11	50	-	-	-	G	20074049	T	G	20074049	3	3	701	1	0	0	0	0	1	0	0	0	4500	1580	55	5	565	5	DGCR8	22	20074049	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09		20074049	31230517	77	61069										
PKDREJ	0	genome.wustl.edu	37	chr22	46657363	46657363	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgaggccccaagtacaggatGgtccccagggtgttctcttt	12	11	1	1			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	22	46657363	46657363	G	T	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.1857	p.T619	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	20	0	0	6	4	40	-	-	-	T	46657363	G	T	46657363	2	4	701	1	0	0	0	0	0	0	0	1	12044	1335	47	4		4	PKDREJ	22	46657363	Silent	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09	26583314	46657363	4647203	78	61070										
WWC3	0	genome.wustl.edu	37	chrX	10092351	10092351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	acggagacacggccagtaacGgagatccccagatccacgtg	12	13	0	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	X	10092351	10092351	G	A	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	missense	c.1798	p.G600R	0.813	superfamily_C2_Ca/lipid-bd_dom_CaLB	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	48	0	0	16	14	46.67	-	-	-	A	10092351	G	A	10092351	3	1	701	1	0	0	0	0	1	0	0	0	17510	1117	39	1	1844	1	WWC3	23	10092351	Missense_Mutation	SNP	G	TCGA-D8-A1X9-01A-12D-A159-09		10092351	145178209	79	61071										
NHS	0	genome.wustl.edu	37	chrX	17743644	17743644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tcaaaggggtcaaagcattgCagcttccctttctcattctg	8	11	4	0			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	X	17743644	17743644	C	A	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.1355	p.A452E	0.994	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	47	0	0	26	15	36.59	-	-	-	A	17743644	C	A	17743644	3	1	701	1	0	0	0	0	1	0	0	0	10483	710	25	4	1482	4	NHS	23	17743644	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	7651293	17743644	137526916	80	61072										
PAGE1	0	genome.wustl.edu	37	chrX	49459370	49459370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	gattaatcttcttagaaaacCcatatttcacactgaaaaga	4	8	3	3			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	X	49459370	49459370	C	T	SNP	PAGE1	ENST00000376150	human	ensembl	69_37n	-1	known	missense	c.4	p.G2S	0.005	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985	58	0	0	28	8	22.22	-	-	-	T	49459370	C	T	49459370	3	4	701	1	0	0	0	0	1	0	0	0	11462	623	22	4	456	4	PAGE1	23	49459370	Missense_Mutation	SNP	C	TCGA-D8-A1X9-01A-12D-A159-09	31715726	49459370	105811190	81	61073										
BTK	0	genome.wustl.edu	37	chrX	100629586	100629586	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	tgtttcaacacaagtgatctTctcaacatctattgaaccct	4	11	4	2			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	X	100629586	100629586	T	C	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.178	p.K60E	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	116	0	0	32	28	46.67	-	-	-	C	100629586	T	C	100629586	3	2	701	1	0	0	0	0	1	0	0	0	1566	1792	62	5	1869	5	BTK	23	100629586	Missense_Mutation	SNP	T	TCGA-D8-A1X9-01A-12D-A159-09	51170216	100629586	54640974	82	61074										
F8	0	genome.wustl.edu	37	chrX	154133268	154133268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0853658536585366	7	0.256493764252921	1.81428571428571	3.7437641723356	0.792797118847539	0.384541062801932	0.991179622791967	0	aaggctagaatagaaggaatAgggacgagaggcctgatttc	14	5	0	4			TCGA-D8-A1X9-01A-12D-A159-09	TCGA-D8-A1X9-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5f65c3a-b922-4a81-863d-59b72b08d1bf	451900d1-a2da-4536-8db3-b56433500ab8	X	154133268	154133268	A	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5404	p.Y1802D	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	67	0	0	75	13	14.61	-	-	-	C	154133268	A	C	154133268	3	2	701	1	0	0	0	0	1	0	0	0	5387	420	15	5	1723	5	F8	23	154133268	Missense_Mutation	SNP	A	TCGA-D8-A1X9-01A-12D-A159-09	53503682	154133268	1137292	83	61075										
RPL5	0	genome.wustl.edu	37	chr1	93299194	93299197	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	acaggatgatagttcgtgtgAcaaacagagatatcatttgt							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	1	93299194	93299197	ACAA	-	DEL	RPL5	ENST00000370321	human	ensembl	69_37n	1	known	frame_shift_del	c.166_169	p.N57fs	1.000:1.000:0.997:1.000	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	-	no_errors	RPL5	HGNC	ENSG00000122406	91	0	0	49	18	26.87	-	-	-	-	93299197	ACAA	-	93299194	7	5	702	1	0	1	0	1	0	0	0	0	13683	275	10	0	176	0	RPL5	1	93299194	Frame_Shift_Del	DEL	ACAA	TCGA-D8-A1XA-01A-11D-A14G-09		93299194	155951427	1	61076										
MAP4K3	0	genome.wustl.edu	37	chr2	39519955	39519955	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ccttcatcatcttctaaatgTgcgacgtgtcctctaaataa	5	11	5	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	2	39519955	39519955	T	C	SNP	MAP4K3	ENST00000263881	human	ensembl	69_37n	-1	known	silent	c.1230	p.A410	1.000	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566	114	0	0	16	44	73.33	-	-	-	C	39519955	T	C	39519955	2	2	702	1	0	0	0	0	0	0	0	1	9332	1683	59	5		5	MAP4K3	2	39519955	Silent	SNP	T	TCGA-D8-A1XA-01A-11D-A14G-09		39519955	203679418	2	61077										
IFRD2	0	genome.wustl.edu	37	chr3	50327172	50327172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	agcggcagccacgtagcagcCcaggccaagggcagaagcac	14	14	0	1			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	3	50327172	50327172	C	A	SNP	IFRD2	ENST00000336089	human	ensembl	69_37n	-1	known	missense	c.1066	p.G356C	1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD2	HGNC	ENSG00000214706	33	0	0	17	19	51.35	-	-	-	A	50327172	C	A	50327172	3	1	702	1	0	0	0	0	1	0	0	0	7608	623	22	4	788	4	IFRD2	3	50327172	Missense_Mutation	SNP	C	TCGA-D8-A1XA-01A-11D-A14G-09		50327172	147695258	3	61078										
CENPC1	0	genome.wustl.edu	37	chr4	68374632	68374632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ttcatcatgaccaacgatacCtccagaaccttcagcattta	4	13	3	2			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	4	68374632	68374632	C	T	SNP	CENPC1	ENST00000273853	human	ensembl	69_37n	-1	known	missense	c.1804	p.G602S	0.047	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC1	HGNC	ENSG00000145241	130	0	0	61	37	37.76	-	-	-	T	68374632	C	T	68374632	3	4	702	1	0	0	0	0	1	0	0	0	3258	681	24	4	1067	4	CENPC1	4	68374632	Missense_Mutation	SNP	C	TCGA-D8-A1XA-01A-11D-A14G-09		68374632	122779644	4	61079										
MAP3K1	0	genome.wustl.edu	37	chr5	56183240	56183241	+	Frame_Shift_Ins	INS	-	-	T													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tgacagcactggtcagagacINStaagaattgcagattttgga							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	5	56183240	56183241	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.4150_4151	p.R1385fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	125	0	0	18	42	70	-	-	-	T	56183241	-	T	56183240	7	5	702	1	0	1	1	0	0	0	0	0	9314	564	20	0	4220	0	MAP3K1	5	56183240	Frame_Shift_Ins	INS	-	TCGA-D8-A1XA-01A-11D-A14G-09		56183240	124732020	5	61080										
INTS1	0	genome.wustl.edu	37	chr7	1511259	1511260	+	Frame_Shift_Del	DEL	CT	CT	-													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	gggacatctcgtctatgtcaCtcagaacctccagcagatct							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	7	1511259	1511260	CT	-	DEL	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	frame_shift_del	c.6815_6814	p.S2272fs	0.982:0.994	superfamily_ARM-type_fold	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	43	0	0	17	2	10.53	-	-	-	-	1511260	CT	-	1511259	7	5	702	1	0	1	0	1	0	0	0	0	7829	565	20	0	385	0	INTS1	7	1511259	Frame_Shift_Del	DEL	CT	TCGA-D8-A1XA-01A-11D-A14G-09		1511259	157627404	6	61081										
DLGAP2	0	genome.wustl.edu	37	chr8	1645363	1645363	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	caggacctggccggctactgGgacatgctgcagctctccat	12	14	1	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	8	1645363	1645363	G	A	SNP	DLGAP2	ENST00000421627	human	ensembl	69_37n	1	known	nonsense	c.2607	p.W869*	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	10	0	0	6	6	50	-	-	-	A	1645363	G	A	1645363	4	1	702	1	0	0	0	0	0	1	0	0	4596	1241	43	4	2645	4	DLGAP2	8	1645363	Nonsense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09		1645363	144718659	7	61082										
CRISPLD1	0	genome.wustl.edu	37	chr8	75932129	75932130	+	Frame_Shift_Del	DEL	CA	CA	-													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tatcagtctgctaattccttCacagtctctaaagtaacagg							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	8	75932129	75932130	CA	-	DEL	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	frame_shift_del	c.1152_1153	p.T385fs	1.000:1.000	superfamily_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	137	0	0	83	33	27.97	-	-	-	-	75932130	CA	-	75932129	7	5	702	1	0	1	0	1	0	0	0	0	3912	825	29	0	1190	0	CRISPLD1	8	75932129	Frame_Shift_Del	DEL	CA	TCGA-D8-A1XA-01A-11D-A14G-09	74286766	75932129	70431893	8	61083										
AKR1C2	0	genome.wustl.edu	37	chr10	5042749	5042749	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	acaagctgcctacctttacaGacactggaaaatgaataaga	7	9	0	3			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	10	5042749	5042749	G	A	SNP	AKR1C2	ENST00000380753	human	ensembl	69_37n	-1	known	missense	c.362	p.S121F	0.003	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C2	HGNC	ENSG00000151632	122	0	0	62	40	39.22	-	-	-	A	5042749	G	A	5042749	3	1	702	1	0	0	0	0	1	0	0	0	470	942	33	2	692	2	AKR1C2	10	5042749	Missense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09		5042749	130491998	9	61084										
C10orf53	0	genome.wustl.edu	37	chr10	50916662	50916662	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	gaggggaactcagccctactGaaatcgacaggacagattgt	12	9	1	2			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	10	50916662	50916662	G	T	SNP	C10orf53	ENST00000374112	human	ensembl	69_37n	1	known	nonstop	c.473	p.*158L	0.001	NULL	NULL	-	no_errors	C10orf53	HGNC	ENSG00000178645	85	0	0	43	28	39.44	-	-	-	T	50916662	G	T	50916662	4	4	702	1	0	0	0	0	0	0	0	0	1616	1285	45	2	552	2	C10orf53	10	50916662	Nonstop_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09	45873913	50916662	84618085	10	61085										
CYP2E1	0	genome.wustl.edu	37	chr10	135340911	135340911	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	agcggcaccatgtctgccctCggagtcaccgtggccctgct	12	16	2	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	10	135340911	135340911	C	T	SNP	CYP2E1	ENST00000252945	human	ensembl	69_37n	1	known	silent	c.12	p.L4	0.007	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649	18	0	0	4	8	66.67	-	-	-	T	135340911	C	T	135340911	2	4	702	1	0	0	0	0	0	0	0	1	4201	871	31	1		1	CYP2E1	10	135340911	Silent	SNP	C	TCGA-D8-A1XA-01A-11D-A14G-09	84424249	135340911	193836	11	61086										
IFITM2	0	genome.wustl.edu	37	chr11	308323	308323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tgctcccccgatgtccaccgTgatccacatccgcagcgaga	9	17	0	2			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	11	308323	308323	T	C	SNP	IFITM2	ENST00000399817	human	ensembl	69_37n	1	known	missense	c.131	p.V44A	1.000	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM2	HGNC	ENSG00000185201	83	0	0	29	22	43.14	-	-	-	C	308323	T	C	308323	3	2	702	1	0	0	0	0	1	0	0	0	7581	1696	59	5	133	5	IFITM2	11	308323	Missense_Mutation	SNP	T	TCGA-D8-A1XA-01A-11D-A14G-09		308323	134698193	12	61087										
OR51I1	0	genome.wustl.edu	37	chr11	5462323	5462323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	gacccatagccaatatacggTtgtgagtgagcacagtgaca	11	9	0	3			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	11	5462323	5462323	T	C	SNP	OR51I1	ENST00000380211	human	ensembl	69_37n	-1	known	missense	c.422	p.N141S	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51I1	HGNC	ENSG00000167359	55	0	0	17	25	59.52	-	-	-	C	5462323	T	C	5462323	3	2	702	1	0	0	0	0	1	0	0	0	11173	1725	60	5	526	5	OR51I1	11	5462323	Missense_Mutation	SNP	T	TCGA-D8-A1XA-01A-11D-A14G-09	5154000	5462323	129544193	13	61088										
OR5D13	0	genome.wustl.edu	37	chr11	55541596	55541596	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	gcttattttcactaccattaTgaagatgcgatctgcaagtg	8	8	2	2			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	11	55541596	55541596	T	G	SNP	OR5D13	ENST00000361760	human	ensembl	69_37n	1	known	missense	c.683	p.M228R	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877	97	0	0	40	32	44.44	-	-	-	G	55541596	T	G	55541596	3	3	702	1	0	0	0	0	1	0	0	0	11227	1464	51	5	685	5	OR5D13	11	55541596	Missense_Mutation	SNP	T	TCGA-D8-A1XA-01A-11D-A14G-09	50079273	55541596	79464920	14	61089										
TMEM138	0	genome.wustl.edu	37	chr11	61135442	61135442	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ttcatatggacagatggactTcaaatgctgtttgtattcca	8	7	2	1			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	11	61135442	61135442	T	C	SNP	TMEM138	ENST00000278826	human	ensembl	69_37n	1	known	silent	c.348	p.L116	0.157	NULL	NULL	-	no_errors	TMEM138	HGNC	ENSG00000149483	98	0	0	39	37	48.68	-	-	-	C	61135442	T	C	61135442	2	2	702	1	0	0	0	0	0	0	0	1	16148	1770	62	5		5	TMEM138	11	61135442	Silent	SNP	T	TCGA-D8-A1XA-01A-11D-A14G-09	5593846	61135442	73871074	15	61090										
PRDM10	0	genome.wustl.edu	37	chr11	129827675	129827675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ccgggtggatgtacaccagcGtgtgctctggaccatccact	12	13	1	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	11	129827675	129827675	G	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.200	p.T67M	0.999	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	48	0	0	18	15	45.45	-	-	-	A	129827675	G	A	129827675	3	1	702	1	0	0	0	0	1	0	0	0	12532	1145	40	1	3398	1	PRDM10	11	129827675	Missense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09	68692233	129827675	5178841	16	61091										
ATF1	0	genome.wustl.edu	37	chr12	51203349	51203349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	gtctgttccaactcccatctAtcagactagcagcggacagt	8	13	3	1			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	12	51203349	51203349	A	G	SNP	ATF1	ENST00000262053	human	ensembl	69_37n	1	known	missense	c.305	p.Y102C	1.000	prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268	78	0	0	52	44	45.83	-	-	-	G	51203349	A	G	51203349	3	3	702	1	0	0	0	0	1	0	0	0	1083	449	16	5	315	5	ATF1	12	51203349	Missense_Mutation	SNP	A	TCGA-D8-A1XA-01A-11D-A14G-09		51203349	82648546	17	61092										
ZFP36L1	0	genome.wustl.edu	37	chr14	69256738	69256739	+	In_Frame_Ins	INS	-	-	GAT													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	cggcgctcttcagcgttgtgINSgatgaagtggcagcggggcc							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	14	69256738	69256739	-	GAT	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	in_frame_ins	c.529_528	p.176in_frame_insI	1.000:1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	23	0	0	4	3	42.86	-	-	-	GAT	69256739	-	GAT	69256738	7	5	702	1	0	1	1	0	0	0	0	0	17742	1348	47	0	491	0	ZFP36L1	14	69256738	In_Frame_Ins	INS	-	TCGA-D8-A1XA-01A-11D-A14G-09		69256738	38092802	18	61093										
ATP2A1	0	genome.wustl.edu	37	chr16	28898983	28898983	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tccatgggggctcctggttcCgcggggccatctactacttt	12	13	1	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	16	28898983	28898983	C	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.868	p.R290S	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	34	0	0	37	19	33.93	-	-	-	A	28898983	C	A	28898983	3	1	702	1	0	0	0	0	1	0	0	0	1140	652	23	3	898	3	ATP2A1	16	28898983	Missense_Mutation	SNP	C	TCGA-D8-A1XA-01A-11D-A14G-09		28898983	61455770	19	61094										
TP53	0	genome.wustl.edu	37	chr17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ttgtcctgcttgcttacctcGcttagtgctccctgggggca	11	13	0	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	84	0	0	8	38	82.61	-	-	-	A	7577022	G	A	7577022	4	1	702	1	0	0	0	0	0	1	0	0	16477	1095	38	1	370	1	TP53	17	7577022	Nonsense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09		7577022	73618188	20	61095										
AARSD1	0	genome.wustl.edu	37	chr17	41123700	41123700	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tccagttatcaaagtccacaGacagccacactggctgcaag	8	13	1	1			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	17	41123700	41123700	G	A	SNP	AARSD1	ENST00000409399	human	ensembl	69_37n	-1	known	missense	c.431	p.S144F	1.000	superfamily_HSP20-like_chaperone	pfam_tRNA_SAD,pfam_CS_domain,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS-like_domain,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	AARSD1	HGNC	ENSG00000108825	92	0	0	51	35	40.7	-	-	-	A	41123700	G	A	41123700	3	1	702	1	0	0	0	0	1	0	0	0	21	942	33	2	1424	2	AARSD1	17	41123700	Missense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09	33546678	41123700	40071510	21	61096										
MATN4	0	genome.wustl.edu	37	chr20	43927067	43927067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	actcggtgcgcacgcggctcGagaactgcaccagccccacc	11	18	0	1			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	20	43927067	43927067	G	A	SNP	MATN4	ENST00000372754	human	ensembl	69_37n	-1	known	missense	c.1292	p.S431L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159	8	0	0	12	4	25	-	-	-	A	43927067	G	A	43927067	3	1	702	1	0	0	0	0	1	0	0	0	9407	1059	37	1	592	1	MATN4	20	43927067	Missense_Mutation	SNP	G	TCGA-D8-A1XA-01A-11D-A14G-09		43927067	19098453	22	61097										
ATF4	0	genome.wustl.edu	37	chr22	39918079	39918082	+	Frame_Shift_Del	DEL	TTCC	TTCC	-													0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	ctgtcctccactccagatcaTtcctttagtttagagctggg							TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	TTCC	TTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	22	39918079	39918082	TTCC	-	DEL	ATF4	ENST00000337304	human	ensembl	69_37n	1	known	frame_shift_del	c.528_531	p.S177fs	1.000:1.000:1.000:0.954	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	87	0	0	14	19	54.29	-	-	-	-	39918082	TTCC	-	39918079	7	5	702	1	0	1	0	1	0	0	0	0	1086	1490	52	0	534	0	ATF4	22	39918079	Frame_Shift_Del	DEL	TTCC	TCGA-D8-A1XA-01A-11D-A14G-09		39918079	11386487	23	61098										
SHROOM2	0	genome.wustl.edu	37	chrX	9841726	9841726	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	taaagccgcggcggtcgacaAgttactggctggagatgaga	15	8	0	2			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	X	9841726	9841726	A	G	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.200	p.K67R	0.947	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	51	0	0	10	18	64.29	-	-	-	G	9841726	A	G	9841726	3	3	702	1	0	0	0	0	1	0	0	0	14383	72	3	5	206	5	SHROOM2	23	9841726	Missense_Mutation	SNP	A	TCGA-D8-A1XA-01A-11D-A14G-09		9841726	145428834	24	61099										
KIAA2022	0	genome.wustl.edu	37	chrX	73960664	73960664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.553235724720845	2.16020671834625	NA	2.16020671834625	0.4	0.991179622791967	0	tgttggtttggcttcccccaCggccaatgccaatttgcatt	9	12	0	0			TCGA-D8-A1XA-01A-11D-A14G-09	TCGA-D8-A1XA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a362780b-8917-4438-9693-ec9fa84c352a	81ee32ae-fc65-4e2c-bbac-2e22214f817b	X	73960664	73960664	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3728	p.R1243H	0.806	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	99	0	0	17	36	67.92	-	-	-	T	73960664	C	T	73960664	3	4	702	1	0	0	0	0	1	0	0	0	8321	536	19	1	830	1	KIAA2022	23	73960664	Missense_Mutation	SNP	C	TCGA-D8-A1XA-01A-11D-A14G-09	64118938	73960664	81309896	25	61100										
OR13G1	0	genome.wustl.edu	37	chr1	247835571	247835571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	atgtatagctggaagcagggCggatataggtgtagattaca	14	4	0	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	1	247835571	247835571	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	69_37n	-1	known	missense	c.773	p.R258H	0.823	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13G1	HGNC	ENSG00000197437	86	0	0	56	60	50.85	-	-	-	T	247835571	C	T	247835571	3	4	703	1	0	0	0	0	1	0	0	0	11015	768	27	1	154	1	OR13G1	1	247835571	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09		247835571	1415050	1	61101										
POTEF	0	genome.wustl.edu	37	chr2	130832873	130832873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	aagacagcccggggggcatcGtcgcccgcaaagccggcctt	14	15	0	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	59	0	0	50	6	10.53	-	-	-	A	130832873	G	A	130832873	2	1	703	1	0	0	0	0	0	0	0	1	12339	1136	40	1		1	POTEF	2	130832873	Silent	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		130832873	112366500	2	61102										
PKP4	0	genome.wustl.edu	37	chr2	159481627	159481627	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	cgtactcacagagacccgccTccccaacagctatacggcgg	9	17	1	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	2	159481627	159481627	T	G	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.841	p.S281A	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	49	0	0	27	6	18.18	-	-	-	G	159481627	T	G	159481627	3	3	703	1	0	0	0	0	1	0	0	0	12061	1551	54	5	863	5	PKP4	2	159481627	Missense_Mutation	SNP	T	TCGA-D8-A1XB-01A-11D-A14G-09	28648754	159481627	83717746	3	61103										
DCLK3	0	genome.wustl.edu	37	chr3	36759619	36759619	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	gggggaaagccacacagcagGatatagaggatcacgccagc	14	10	1	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	3	36759619	36759619	G	A	SNP	DCLK3	ENST00000416516	human	ensembl	69_37n	-1	known	silent	c.1635	p.I545	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673	75	0	0	56	19	25.33	-	-	-	A	36759619	G	A	36759619	2	1	703	1	0	0	0	0	0	0	0	1	4324	1164	41	2		2	DCLK3	3	36759619	Silent	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		36759619	161262811	4	61104										
CCDC13	0	genome.wustl.edu	37	chr3	42777253	42777253	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	tgtcgcactttggcctcccgCtcagctaccatggcctgcag	10	16	1	0			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	3	42777253	42777253	C	T	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	silent	c.1317	p.E439	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	60	0	0	43	14	24.56	-	-	-	T	42777253	C	T	42777253	2	4	703	1	0	0	0	0	0	0	0	1	2790	796	28	4		4	CCDC13	3	42777253	Silent	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09	6017634	42777253	155245177	5	61105										
WWTR1	0	genome.wustl.edu	37	chr3	149374905	149374905	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	gacgagtcggtgctggactgGcgcgagtgcgagcccgaatc	17	11	0	0			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	3	149374905	149374905	G	C	SNP	WWTR1	ENST00000360632	human	ensembl	69_37n	-1	known	silent	c.189	p.R63	0.999	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWTR1	HGNC	ENSG00000018408	15	0	0	13	4	23.53	-	-	-	C	149374905	G	C	149374905	2	2	703	1	0	0	0	0	0	0	0	1	17514	1190	42	4		4	WWTR1	3	149374905	Silent	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09	106597652	149374905	48647525	6	61106										
PLK4	0	genome.wustl.edu	37	chr4	128811154	128811154	+	Frame_Shift_Del	DEL	T	T	-													0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	aaaaagaactctgatgcttcTgataatgcacattctgtaaa							TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	4	128811154	128811154	T	-	DEL	PLK4	ENST00000270861	human	ensembl	69_37n	1	known	frame_shift_del	c.1593	p.D532fs	0.184	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	94	0	0	60	12	16.44	-	-	-	-	128811154	T	-	128811154	7	5	703	1	0	1	0	1	0	0	0	0	12172	1567	55	0	1619	0	PLK4	4	128811154	Frame_Shift_Del	DEL	T	TCGA-D8-A1XB-01A-11D-A14G-09		128811154	62343122	7	61107										
GLRA3	0	genome.wustl.edu	37	chr4	175649752	175649752	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	gtttccaaatggagtccaacAtggaggggtcgaggtctaaa	13	7	1	0			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	4	175649752	175649752	A	T	SNP	GLRA3	ENST00000274093	human	ensembl	69_37n	-1	known	missense	c.365	p.M122K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Glycine_rcpt_A,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451	95	0	0	53	22	29.33	-	-	-	T	175649752	A	T	175649752	3	4	703	1	0	0	0	0	1	0	0	0	6508	217	8	5	1057	5	GLRA3	4	175649752	Missense_Mutation	SNP	A	TCGA-D8-A1XB-01A-11D-A14G-09	46838598	175649752	15504524	8	61108										
ANKRD37	0	genome.wustl.edu	37	chr4	186318102	186318102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	tgttgctggattgcaaccccGaggtgagattcgggctcaca	13	10	1	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	4	186318102	186318102	G	A	SNP	ANKRD37	ENST00000335174	human	ensembl	69_37n	1	known	missense	c.25	p.E9K	0.942	NULL	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD37	HGNC	ENSG00000186352	65	0	0	62	13	17.33	-	-	-	A	186318102	G	A	186318102	3	1	703	1	0	0	0	0	1	0	0	0	666	1059	37	1	27	1	ANKRD37	4	186318102	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09	10668350	186318102	4836174	9	61109										
MAP3K1	0	genome.wustl.edu	37	chr5	56177099	56177099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	agctgagcctgttgaaatcaGgtaatttttcttctgaaaat	8	6	3	3			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	5	56177099	56177099	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.2369	p.R790M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	141	0	0	113	52	31.52	-	-	-	T	56177099	G	T	56177099	3	4	703	1	0	0	0	0	1	0	0	0	9314	1014	35	4	2419	4	MAP3K1	5	56177099	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		56177099	124738161	10	61110										
MAP3K1	0	genome.wustl.edu	37	chr5	56179396	56179396	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	ataccaaagcaaaacaaccgTatagagaagacactgaatgg	8	8	0	3			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	5	56179396	56179396	T	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.3709	p.Y1237N	0.993	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	122	0	0	97	54	35.76	-	-	-	A	56179396	T	A	56179396	3	1	703	1	0	0	0	0	1	0	0	0	9314	1638	57	5	3767	5	MAP3K1	5	56179396	Missense_Mutation	SNP	T	TCGA-D8-A1XB-01A-11D-A14G-09	2297	56179396	124735864	11	61111										
C6orf170	0	genome.wustl.edu	37	chr6	121526246	121526246	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	accaaagatatgtgattgttCatagttgaataaagaacgaa	8	4	1	4			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	6	121526246	121526246	C	T	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	missense	c.2545	p.E849K	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	39	0	0	33	8	19.51	-	-	-	T	121526246	C	T	121526246	3	4	703	1	0	0	0	0	1	0	0	0	2365	835	29	2	1272	2	C6orf170	6	121526246	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09		121526246	49588821	12	61112										
WTAP	0	genome.wustl.edu	37	chr6	160174524	160174524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	aaagttaatggcgaagtgtcGaatgcttatccaggagaatc	11	6	0	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	6	160174524	160174524	G	C	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	1	known	missense	c.485	p.R162P	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	105	0	0	60	36	37.11	-	-	-	C	160174524	G	C	160174524	3	2	703	1	0	0	0	0	1	0	0	0	17506	1058	37	3	511	3	WTAP	6	160174524	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09	38648278	160174524	10940543	13	61113										
OR6X1	0	genome.wustl.edu	37	chr11	123624563	123624563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	tgaaggaattcgtaggattgCggacagaatgtagatataag	13	3	0	3			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	11	123624563	123624563	C	T	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.664	p.A222T	0.054	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	50	0	0	38	22	36.67	-	-	-	T	123624563	C	T	123624563	3	4	703	1	0	0	0	0	1	0	0	0	11285	768	27	1	276	1	OR6X1	11	123624563	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09		123624563	11381953	14	61114										
CLEC4A	0	genome.wustl.edu	37	chr12	8288271	8288271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	atcagcatcttggcaagacaGtgagaaggactgtgctagaa	12	7	2	3			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	12	8288271	8288271	G	A	SNP	CLEC4A	ENST00000229332	human	ensembl	69_37n	1	known	missense	c.389	p.S130N	0.136	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729	65	0	0	41	16	28.07	-	-	-	A	8288271	G	A	8288271	3	1	703	1	0	0	0	0	1	0	0	0	3542	1029	36	4	403	4	CLEC4A	12	8288271	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		8288271	125563624	15	61115										
PPM1H	0	genome.wustl.edu	37	chr12	63061084	63061084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	catcatctgatccatgatcaTattttgaaagatcgtagatt	6	7	3	5			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	12	63061084	63061084	T	C	SNP	PPM1H	ENST00000228705	human	ensembl	69_37n	-1	known	missense	c.1271	p.Y424C	0.999	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1H	HGNC	ENSG00000111110	81	0	0	71	33	31.73	-	-	-	C	63061084	T	C	63061084	3	2	703	1	0	0	0	0	1	0	0	0	12418	1406	49	5	281	5	PPM1H	12	63061084	Missense_Mutation	SNP	T	TCGA-D8-A1XB-01A-11D-A14G-09	54772813	63061084	70790811	16	61116										
C14orf129	0	genome.wustl.edu	37	chr14	96851896	96851896	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	ttgaccaggtagatgatcatTtacagactccctaccatgaa	7	10	1	5			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	14	96851896	96851896	T	A	SNP	C14orf129	ENST00000438650	human	ensembl	69_37n	1	known	missense	c.295	p.L99I	0.004	pfam_DUF727,superfamily_GSKIP/TIF31_domain	pfam_DUF727,superfamily_GSKIP/TIF31_domain	-	no_errors	C14orf129	HGNC	ENSG00000100744	74	0	0	58	21	26.58	-	-	-	A	96851896	T	A	96851896	3	1	703	1	0	0	0	0	1	0	0	0	1756	1838	64	5	301	5	C14orf129	14	96851896	Missense_Mutation	SNP	T	TCGA-D8-A1XB-01A-11D-A14G-09		96851896	10497644	17	61117										
INO80	0	genome.wustl.edu	37	chr15	41372096	41372096	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	cacctccttcatgcactggtGagcaagctgaaaacaacaac	7	13	1	2			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	15	41372096	41372096	G	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.934	p.H312Y	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	45	0	0	37	14	26.92	-	-	-	A	41372096	G	A	41372096	3	1	703	1	0	0	0	0	1	0	0	0	7800	1290	45	2	3848	2	INO80	15	41372096	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		41372096	61159296	18	61118										
MFSD11	0	genome.wustl.edu	37	chr17	74734448	74734448	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	agccaaaatgtccccggaatCtaaaaagcttttcaacatca	5	11	3	0			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	17	74734448	74734448	C	G	SNP	MFSD11	ENST00000336509	human	ensembl	69_37n	1	known	missense	c.14	p.S5C	0.404	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD11	HGNC	ENSG00000092931	129	0	0	125	23	15.54	-	-	-	G	74734448	C	G	74734448	3	3	703	1	0	0	0	0	1	0	0	0	9600	913	32	2	16	2	MFSD11	17	74734448	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09		74734448	6460762	19	61119										
C19orf26	0	genome.wustl.edu	37	chr19	1235064	1235064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	cgcctcattgaaggagacccGgcggcccgtggagctggtgg	17	12	1	2			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	19	1235064	1235064	G	A	SNP	C19orf26	ENST00000382477	human	ensembl	69_37n	-1	known	missense	c.373	p.R125W	0.994	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625	15	0	0	13	5	26.32	-	-	-	A	1235064	G	A	1235064	3	1	703	1	0	0	0	0	1	0	0	0	1934	1115	39	1	990	1	C19orf26	19	1235064	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		1235064	57893919	20	61120										
SLC25A42	0	genome.wustl.edu	37	chr19	19218751	19218751	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	cgcatctcgagagaagagggGctgaagactctctaccatgg	13	10	2	4			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	19	19218751	19218751	G	T	SNP	SLC25A42	ENST00000318596	human	ensembl	69_37n	1	known	silent	c.546	p.G182	0.459	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,prints_Graves_DC,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A42	HGNC	ENSG00000181035	46	0	0	26	13	33.33	-	-	-	T	19218751	G	T	19218751	2	4	703	1	0	0	0	0	0	0	0	1	14596	1190	42	4		4	SLC25A42	19	19218751	Silent	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09	17983687	19218751	39910232	21	61121										
ZNF461	0	genome.wustl.edu	37	chr19	37130642	37130642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	gactaaaaaataaatggtaaCtgaagatttttctacacttt	5	5	1	2			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	19	37130642	37130642	C	T	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	missense	c.605	p.S202N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	113	0	0	88	34	27.87	-	-	-	T	37130642	C	T	37130642	3	4	703	1	0	0	0	0	1	0	0	0	18021	565	20	4	1090	4	ZNF461	19	37130642	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09	17911891	37130642	21998341	22	61122										
ZFP112	0	genome.wustl.edu	37	chr19	44831587	44831587	+	Nonstop_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	cagctcccatttgaggacttCaaaacaaaacagaatcttca	5	11	3	2			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	19	44831587	44831587	C	A	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	nonstop	c.2792	p.*931L	0.629	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	58	0	0	54	6	10	-	-	-	A	44831587	C	A	44831587	4	1	703	1	0	0	0	0	0	0	0	0	17734	837	29	2	4	2	ZFP112	19	44831587	Nonstop_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09	7700945	44831587	14297396	23	61123										
CLDN14	0	genome.wustl.edu	37	chr21	37833546	37833546	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	catgccgctgggcagcagcgGgttgtagaagttctgcacca	14	11	1	1			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	21	37833546	37833546	G	C	SNP	CLDN14	ENST00000342108	human	ensembl	69_37n	-1	known	missense	c.448	p.P150A	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14,prints_Claudin,prints_Claudin2	-	no_errors	CLDN14	HGNC	ENSG00000159261	51	0	0	25	11	29.73	-	-	-	C	37833546	G	C	37833546	3	2	703	1	0	0	0	0	1	0	0	0	3505	1232	43	4	275	4	CLDN14	21	37833546	Missense_Mutation	SNP	G	TCGA-D8-A1XB-01A-11D-A14G-09		37833546	10296349	24	61124										
GRIPAP1	0	genome.wustl.edu	37	chrX	48839811	48839811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.822247998132132	1.20861486486486	1.61148648648649	1.07432432432432	1	1	0	gacttctcttgcagcgtttcCattgctagctcatccagcat	7	13	2	0			TCGA-D8-A1XB-01A-11D-A14G-09	TCGA-D8-A1XB-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5ca0f82-6fa9-4d54-adc7-385721f351f3	665d057d-7d5f-41ef-98f1-5d71dded62b5	X	48839811	48839811	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.1314	p.M438I	0.979	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	57	0	0	66	16	19.51	-	-	-	T	48839811	C	T	48839811	3	4	703	1	0	0	0	0	1	0	0	0	6840	594	21	4	1309	4	GRIPAP1	23	48839811	Missense_Mutation	SNP	C	TCGA-D8-A1XB-01A-11D-A14G-09		48839811	106430749	25	61125										
ATAD3B	0	genome.wustl.edu	37	chr1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tgtcttgtggtggcggtcggCcgttctgccccccagggcac	15	14	2	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	1	1431165	1431165	C	T	SNP	ATAD3B	ENST00000308647	human	ensembl	69_37n	1	known	missense	c.1915	p.P639S	0.003	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	10	0	0	28	8	22.22	-	-	-	T	1431165	C	T	1431165	3	4	704	1	0	0	0	0	1	0	0	0	1078	739	26	4	1977	4	ATAD3B	1	1431165	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		1431165	247819456	1	61126										
PER3	0	genome.wustl.edu	37	chr1	7890055	7890055	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tcccatcctactgccagcgcTctgtccacaggatcgcctcc	7	19	1	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	13	0	0	25	8	23.53	-	-	-	A	7890055	T	A	7890055	2	1	704	1	0	0	0	0	0	0	0	1	11804	1538	54	5		5	PER3	1	7890055	Silent	SNP	T	TCGA-D8-A1XC-01A-11D-A14G-09	6458890	7890055	241360566	2	61127										
TOR3A	0	genome.wustl.edu	37	chr1	179063271	179063271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	atgaggtggtcctaaagttgCtcaaggctggatggtcccgg	15	8	1	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	1	179063271	179063271	C	T	SNP	TOR3A	ENST00000367627	human	ensembl	69_37n	1	known	missense	c.862	p.L288F	1.000	NULL	pfam_Torsin	-	no_errors	TOR3A	HGNC	ENSG00000186283	45	0	0	43	16	27.12	-	-	-	T	179063271	C	T	179063271	3	4	704	1	0	0	0	0	1	0	0	0	16472	797	28	4	880	4	TOR3A	1	179063271	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09	171173216	179063271	70187350	3	61128										
MYO7B	0	genome.wustl.edu	37	chr2	128389268	128389268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	cacactggccctgcagcaccCggccctccaggacgaggtct	11	18	1	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	2	128389268	128389268	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.5114	p.P1705L	0.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	16	0	0	17	5	22.73	-	-	-	T	128389268	C	T	128389268	3	4	704	1	0	0	0	0	1	0	0	0	10155	652	23	1	5253	1	MYO7B	2	128389268	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		128389268	114810105	4	61129										
SCN3A	0	genome.wustl.edu	37	chr2	166012326	166012326	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	atgagtcgaaatagagacagGaaagcccagctaaaggtgtc	12	7	0	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	2	166012326	166012326	G	C	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.1119	p.F373L	0.987	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	45	0	0	65	10	13.33	-	-	-	C	166012326	G	C	166012326	3	2	704	1	0	0	0	0	1	0	0	0	14006	1165	41	2	4959	2	SCN3A	2	166012326	Missense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	37623058	166012326	77187047	5	61130										
CCDC141	0	genome.wustl.edu	37	chr2	179742731	179742731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	actcaagccctagatcttgtGttataaaactcttctttaaa	4	9	4	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	2	179742731	179742731	G	A	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	missense	c.1859	p.T620I	0.567	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	51	0	0	24	15	38.46	-	-	-	A	179742731	G	A	179742731	3	1	704	1	0	0	0	0	1	0	0	0	2800	1377	48	4	2541	4	CCDC141	2	179742731	Missense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	13730405	179742731	63456642	6	61131										
SI	0	genome.wustl.edu	37	chr3	164755728	164755728	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tggttcttgaatggggatgaTataacctcctctaagatgta	10	6	2	3			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	3	164755728	164755728	T	C	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.2386	p.I796V	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	71	0	0	28	33	54.1	-	-	-	C	164755728	T	C	164755728	3	2	704	1	0	0	0	0	1	0	0	0	14386	1406	49	5	3209	5	SI	3	164755728	Missense_Mutation	SNP	T	TCGA-D8-A1XC-01A-11D-A14G-09		164755728	33266702	7	61132										
PCDH10	0	genome.wustl.edu	37	chr4	134073305	134073305	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	gggcagccgcccctttcctcCaccgccaccctggtggttca	10	19	1	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	4	134073305	134073305	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.2010	p.S670	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	8	0	0	11	7	38.89	-	-	-	T	134073305	C	T	134073305	2	4	704	1	0	0	0	0	0	0	0	1	11580	581	21	4		4	PCDH10	4	134073305	Silent	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		134073305	57080971	8	61133										
MRPS30	0	genome.wustl.edu	37	chr5	44813385	44813385	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	agcacaagctatgtatcaagGtaaaaattaattttatagca	6	5	1	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	5	44813385	44813385	G	A	SNP	MRPS30	ENST00000507110	human	ensembl	69_37n	1	known	splice_site	c.1030+1	e4+1	1.000	-	-	-	no_errors	MRPS30	HGNC	ENSG00000112996	23	0	0	11	16	59.26	-	-	-	A	44813385	G	A	44813385	5	1	704	1	0	0	0	0	0	0	1	0	9912	1275	44	4	1045	4	MRPS30	5	44813385	Splice_Site	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09		44813385	136101875	9	61134										
HMMR	0	genome.wustl.edu	37	chr5	162891728	162891728	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	gtacaattcatttttccgcaGaatctaaacaaaatcttaat	3	8	3	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	5	162891728	162891728	G	A	SNP	HMMR	ENST00000393915	human	ensembl	69_37n	1	known	splice_site	c.146-1	e3-1	0.992	-	-	-	no_errors	HMMR	HGNC	ENSG00000072571	73	0	0	28	18	39.13	-	-	-	A	162891728	G	A	162891728	5	1	704	1	0	0	0	0	0	0	1	0	7293	956	33	2	155	2	HMMR	5	162891728	Splice_Site	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	118078343	162891728	18023532	10	61135										
PEX7	0	genome.wustl.edu	37	chr6	137147511	137147511	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tggagtgagaacaacgaacaTgtcctcatcacctgtagtgg	11	9	2	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	6	137147511	137147511	T	G	SNP	PEX7	ENST00000318471	human	ensembl	69_37n	1	known	missense	c.243	p.H81Q	0.995	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357	51	0	0	41	12	22.64	-	-	-	G	137147511	T	G	137147511	3	3	704	1	0	0	0	0	1	0	0	0	11825	1461	51	5	253	5	PEX7	6	137147511	Missense_Mutation	SNP	T	TCGA-D8-A1XC-01A-11D-A14G-09		137147511	33967556	11	61136										
SP4	0	genome.wustl.edu	37	chr7	21516732	21516732	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	aagatggagtaaaagtccagCaagctactatagctcctgta	9	8	0	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	7	21516732	21516732	C	A	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	missense	c.1714	p.Q572K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	27	0	0	13	17	56.67	-	-	-	A	21516732	C	A	21516732	3	1	704	1	0	0	0	0	1	0	0	0	15055	711	25	4	1728	4	SP4	7	21516732	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		21516732	137621931	12	61137										
PDE1C	0	genome.wustl.edu	37	chr7	31912927	31912927	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tgaaacggctgatcagatcaTaacgtgtgagtagttcatag	11	6	3	4			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	7	31912927	31912927	T	G	SNP	PDE1C	ENST00000321453	human	ensembl	69_37n	-1	known	missense	c.587	p.Y196S	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	30	0	0	25	19	43.18	-	-	-	G	31912927	T	G	31912927	3	3	704	1	0	0	0	0	1	0	0	0	11708	1406	49	5	1365	5	PDE1C	7	31912927	Missense_Mutation	SNP	T	TCGA-D8-A1XC-01A-11D-A14G-09	10396195	31912927	127225736	13	61138										
CDK13	0	genome.wustl.edu	37	chr7	40027851	40027851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	gctgcctgaagataaagaagCtgataggtaagtgcaaaaag	12	5	0	4			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	7	40027851	40027851	C	T	SNP	CDK13	ENST00000181839	human	ensembl	69_37n	1	known	missense	c.1865	p.A622V	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	10	0	0	11	11	50	-	-	-	T	40027851	C	T	40027851	3	4	704	1	0	0	0	0	1	0	0	0	3158	797	28	4	1871	4	CDK13	7	40027851	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09	8114924	40027851	119110812	14	61139										
OR4D6	0	genome.wustl.edu	37	chr11	59225033	59225033	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	gctttggagcttttcatgatCtctaacaacggactggtgac	10	9	2	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	11	59225033	59225033	C	A	SNP	OR4D6	ENST00000300127	human	ensembl	69_37n	1	known	silent	c.600	p.I200	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	70	0	0	41	29	41.43	-	-	-	A	59225033	C	A	59225033	2	1	704	1	0	0	0	0	0	0	0	1	11131	903	32	2		2	OR4D6	11	59225033	Silent	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		59225033	75781483	15	61140										
BCO2	0	genome.wustl.edu	37	chr11	112064318	112064318	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	aggccaacagtgctaaaaacCgaattgtgatctcagaattt	8	8	1	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	11	112064318	112064318	C	T	SNP	BCO2	ENST00000357685	human	ensembl	69_37n	1	known	nonsense	c.415	p.R139*	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580	50	0	0	35	29	44.62	-	-	-	T	112064318	C	T	112064318	4	4	704	1	0	0	0	0	0	1	0	0	1389	644	23	1	425	1	BCO2	11	112064318	Nonsense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09	52839285	112064318	22942198	16	61141										
DUSP16	0	genome.wustl.edu	37	chr12	12630318	12630318	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ggttctgaccgaatgcaatcGcttgctctggctgtctgaag	12	10	3	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	12	12630318	12630318	G	A	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	nonsense	c.1447	p.R483*	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	35	0	0	27	4	12.9	-	-	-	A	12630318	G	A	12630318	4	1	704	1	0	0	0	0	0	1	0	0	4851	1095	38	1	554	1	DUSP16	12	12630318	Nonsense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09		12630318	121221577	17	61142										
AMHR2	0	genome.wustl.edu	37	chr12	53825208	53825208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ccacttcagcgttcagcaagGcccttgttccaggaatcctc	8	15	2	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	12	53825208	53825208	G	A	SNP	AMHR2	ENST00000257863	human	ensembl	69_37n	1	known	missense	c.1673	p.G558D	0.007	pirsf_Anti-muellerian_hrmn_rcpt_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	28	0	0	30	18	37.5	-	-	-	A	53825208	G	A	53825208	3	1	704	1	0	0	0	0	1	0	0	0	573	1203	42	4	1715	4	AMHR2	12	53825208	Missense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	41194890	53825208	80026687	18	61143										
POMT2	0	genome.wustl.edu	37	chr14	77767530	77767530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ggccaacaaacttgacccctAaagcaccagcaagactaacg	7	14	0	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	14	77767530	77767530	A	G	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	missense	c.719	p.L240S	0.787	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830	33	0	0	17	12	41.38	-	-	-	G	77767530	A	G	77767530	3	3	704	1	0	0	0	0	1	0	0	0	12320	372	13	5	1597	5	POMT2	14	77767530	Missense_Mutation	SNP	A	TCGA-D8-A1XC-01A-11D-A14G-09		77767530	29582010	19	61144										
ATXN2L	0	genome.wustl.edu	37	chr16	28844531	28844531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ctccaagacagagtccgtatCggataaggaggacaaaccac	10	11	0	2			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	16	28844531	28844531	C	T	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	missense	c.1811	p.S604L	0.011	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	20	0	0	31	12	27.91	-	-	-	T	28844531	C	T	28844531	3	4	704	1	0	0	0	0	1	0	0	0	1216	893	31	1	1865	1	ATXN2L	16	28844531	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		28844531	61510222	20	61145										
CLEC18B	0	genome.wustl.edu	37	chr16	74446108	74446108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	cgcacgagcactcctcctccCggaaccggccgtgcacacac	9	20	0	0			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	16	74446108	74446108	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	missense	c.821	p.R274Q	0.994	smart_EGF-like	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	25	0	0	22	5	18.52	-	-	-	T	74446108	C	T	74446108	3	4	704	1	0	0	0	0	1	0	0	0	3533	652	23	1	574	1	CLEC18B	16	74446108	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09	45601577	74446108	15908645	21	61146										
TLK2	0	genome.wustl.edu	37	chr17	60678053	60678053	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ctgtgagggaaatgatctggActtctacctgaaacagcaca	10	9	2	3			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	17	60678053	60678053	A	G	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	1	known	missense	c.1658	p.D553G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	63	0	0	38	25	39.68	-	-	-	G	60678053	A	G	60678053	3	3	704	1	0	0	0	0	1	0	0	0	16039	275	10	5	1658	5	TLK2	17	60678053	Missense_Mutation	SNP	A	TCGA-D8-A1XC-01A-11D-A14G-09		60678053	20517157	22	61147										
MUC16	0	genome.wustl.edu	37	chr19	9066614	9066614	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ggagtcaaggaatatgttgaCtctctcttaatttttgtagt	9	5	3	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	19	9066614	9066614	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.20832	p.E6944D	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	59	0	0	46	23	33.33	-	-	-	A	9066614	C	A	9066614	3	1	704	1	0	0	0	0	1	0	0	0	10045	564	20	4	23019	4	MUC16	19	9066614	Missense_Mutation	SNP	C	TCGA-D8-A1XC-01A-11D-A14G-09		9066614	50062369	23	61148										
CRNKL1	0	genome.wustl.edu	37	chr20	20036596	20036596	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	tcattttgtgacctactgttTttgtcaacagcatttcccaa	5	10	2	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	20	20036596	20036596	T	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.63	p.K21N	0.006	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	56	0	0	24	20	45.45	-	-	-	A	20036596	T	A	20036596	3	1	704	1	0	0	0	0	1	0	0	0	3921	1838	64	5	2543	5	CRNKL1	20	20036596	Missense_Mutation	SNP	T	TCGA-D8-A1XC-01A-11D-A14G-09		20036596	42988924	24	61149										
COMMD7	0	genome.wustl.edu	37	chr20	31315779	31315779	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	ttggtggtggcaaattcagaGagctgagccagaaatctttc	12	7	2	3			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	20	31315779	31315779	G	A	SNP	COMMD7	ENST00000278980	human	ensembl	69_37n	-1	known	silent	c.162	p.L54	0.975	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD7	HGNC	ENSG00000149600	64	0	0	38	15	28.3	-	-	-	A	31315779	G	A	31315779	2	1	704	1	0	0	0	0	0	0	0	1	3751	929	33	2		2	COMMD7	20	31315779	Silent	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	11279183	31315779	31709741	25	61150										
C20orf195	0	genome.wustl.edu	37	chr20	62187465	62187465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	gctccggtcgccagacccacGgcccttcctggccgactggg	13	18	0	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	20	62187465	62187465	G	A	SNP	C20orf195	ENST00000370097	human	ensembl	69_37n	1	known	missense	c.449	p.R150Q	0.122	NULL	superfamily_Fibronectin_type3	-	no_errors	C20orf195	HGNC	ENSG00000125531	14	0	0	7	8	53.33	-	-	-	A	62187465	G	A	62187465	3	1	704	1	0	0	0	0	1	0	0	0	2120	1116	39	1	451	1	C20orf195	20	62187465	Missense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09	30871686	62187465	838055	26	61151										
TAF1	0	genome.wustl.edu	37	chrX	70627446	70627446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0740740740740741	2	0.953986987641084	0.841864018334607	0	0.894480519480519	0.4	0.991179622791967	0	acctcataagtccatccaccGgcgccgcacagaccctatgg	8	17	1	1			TCGA-D8-A1XC-01A-11D-A14G-09	TCGA-D8-A1XC-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	68fd3045-073d-4242-8a41-41b707fca625	fea77f35-8b5b-404e-a9e1-5b2d3d02fd4c	X	70627446	70627446	G	A	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	1	known	missense	c.4127	p.R1376Q	1.000	pirsf_TAF1_animal,superfamily_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	42	0	0	35	13	27.08	-	-	-	A	70627446	G	A	70627446	3	1	704	1	0	0	0	0	1	0	0	0	15605	1116	39	1	4296	1	TAF1	23	70627446	Missense_Mutation	SNP	G	TCGA-D8-A1XC-01A-11D-A14G-09		70627446	84643114	27	61152										
MACF1	0	genome.wustl.edu	37	chr1	39908479	39908479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aatccagtgctggagatgatGccagcagcttaaggagccgt	13	9	0	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	39908479	39908479	G	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.13021	p.A4341T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	32	0	0	15	9	37.5	-	-	-	A	39908479	G	A	39908479	3	1	705	1	0	0	0	0	1	0	0	0	9211	1319	46	4	19466	4	MACF1	1	39908479	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		39908479	209342142	1	61153										
HRNR	0	genome.wustl.edu	37	chr1	152192762	152192762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	atgggccactgctggaagatCgaccaaagccagtcccatgt	11	12	0	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	152192762	152192762	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.1343	p.R448Q	0.003	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	75	0	0	67	17	20.24	-	-	-	T	152192762	C	T	152192762	3	4	705	1	0	0	0	0	1	0	0	0	7410	884	31	1	7213	1	HRNR	1	152192762	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	112284283	152192762	97057859	2	61154										
HRNR	0	genome.wustl.edu	37	chr1	152193765	152193765	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gttctcctctttttcagtttCttcttgttcctcttggtgct	6	11	6	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	152193765	152193765	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	0.642	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	124	0	0	146	35	19.34	-	-	-	T	152193765	C	T	152193765	3	4	705	1	0	0	0	0	1	0	0	0	7410	922	32	2	8216	2	HRNR	1	152193765	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	1003	152193765	97056856	3	61155										
FLG	0	genome.wustl.edu	37	chr1	152278000	152278000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gctcgtggtggtacccctgcCttcctcctctgcttgacccc	9	18	1	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	152278000	152278000	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.9362	p.R3121M	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	94	0	0	91	15	14.15	-	-	-	A	152278000	C	A	152278000	3	1	705	1	0	0	0	0	1	0	0	0	5968	681	24	4	2827	4	FLG	1	152278000	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	84235	152278000	96972621	4	61156										
OR6K3	0	genome.wustl.edu	37	chr1	158687927	158687927	+	Frame_Shift_Del	DEL	A	A	-													0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tttctagtagagctacctgtAaatggagagggcatagtcca							TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	158687927	158687927	A	-	DEL	OR6K3	ENST00000368146	human	ensembl	69_37n	-1	known	frame_shift_del	c.27	p.F9fs	0.531	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757	11	0	0	13	12	48	-	-	-	-	158687927	A	-	158687927	7	5	705	1	0	1	0	1	0	0	0	0	11276	377	13	0		0	OR6K3	1	158687927	Frame_Shift_Del	DEL	A	TCGA-D8-A1XF-01A-11D-A14G-09	6409927	158687927	90562694	5	61157										
PRELP	0	genome.wustl.edu	37	chr1	203452389	203452389	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aggccagccaacaagacgacCaagacccgggactgggcccg	13	15	0	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	203452389	203452389	C	A	SNP	PRELP	ENST00000343110	human	ensembl	69_37n	1	known	missense	c.77	p.P26Q	0.143	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	24	0	0	24	7	22.58	-	-	-	A	203452389	C	A	203452389	3	1	705	1	0	0	0	0	1	0	0	0	12554	594	21	4	79	4	PRELP	1	203452389	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	44764462	203452389	45798232	6	61158										
NLRP3	0	genome.wustl.edu	37	chr1	247587581	247587581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gggggacctgatcatgagctGctgccccgacccaaacccac	11	16	1	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	1	247587581	247587581	G	T	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.836	p.C279F	1.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	23	0	0	17	7	29.17	-	-	-	T	247587581	G	T	247587581	3	4	705	1	0	0	0	0	1	0	0	0	10550	1319	46	4	846	4	NLRP3	1	247587581	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	44135192	247587581	1663040	7	61159										
ABI2	0	genome.wustl.edu	37	chr2	204291989	204291989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	atgtcatcaagaagaatgacGatggttggtatgagggagtt	14	3	2	4			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	2	204291989	204291989	G	A	SNP	ABI2	ENST00000295851	human	ensembl	69_37n	1	known	missense	c.1456	p.D486N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443	72	0	0	8	74	90.24	-	-	-	A	204291989	G	A	204291989	3	1	705	1	0	0	0	0	1	0	0	0	89	1058	37	1	1380	1	ABI2	2	204291989	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		204291989	38907384	8	61160										
ZDBF2	0	genome.wustl.edu	37	chr2	207175936	207175936	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	atcattagaaagtatatttcGaaatactctgtctttttacg	5	6	3	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	2	207175936	207175936	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	silent	c.6684	p.S2228	0.152	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	55	0	0	4	24	85.71	-	-	-	A	207175936	G	A	207175936	2	1	705	1	0	0	0	0	0	0	0	1	17695	1045	37	1		1	ZDBF2	2	207175936	Silent	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	2883947	207175936	36023437	9	61161										
SLC19A3	0	genome.wustl.edu	37	chr2	228564073	228564073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gtaggcgtagtaggccacctCggcggcggtgaccatcccat	14	13	0	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	2	228564073	228564073	C	T	SNP	SLC19A3	ENST00000258403	human	ensembl	69_37n	-1	known	missense	c.358	p.E120K	1.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917	15	0	0	0	15	100	-	-	-	T	228564073	C	T	228564073	3	4	705	1	0	0	0	0	1	0	0	0	14519	893	31	1	1148	1	SLC19A3	2	228564073	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	21388137	228564073	14635300	10	61162										
C3orf20	0	genome.wustl.edu	37	chr3	14769950	14769950	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	catcttctgttaacaggtctGtttaccattgaatatcccac	5	11	3	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	3	14769950	14769950	G	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	1	known	silent	c.1695	p.L565	0.889	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	37	0	0	28	4	12.5	-	-	-	T	14769950	G	T	14769950	2	4	705	1	0	0	0	0	0	0	0	1	2233	1364	48	4		4	C3orf20	3	14769950	Silent	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		14769950	183252480	11	61163										
CCDC13	0	genome.wustl.edu	37	chr3	42754739	42754739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tccagatgttgctccagcacCacggtgcggtgtcgctcctc	11	15	0	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	3	42754739	42754739	C	T	SNP	CCDC13	ENST00000310232	human	ensembl	69_37n	-1	known	silent	c.1788	p.V596	0.856	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	30	0	0	14	8	36.36	-	-	-	T	42754739	C	T	42754739	2	4	705	1	0	0	0	0	0	0	0	1	2790	581	21	4		4	CCDC13	3	42754739	Silent	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	27984789	42754739	155267691	12	61164										
DOCK3	0	genome.wustl.edu	37	chr3	51263178	51263178	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	ttgaagtgaccatgtatgtgCtttatgcagatggagaaatc	11	5	0	4			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	3	51263178	51263178	C	A	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.1351	p.L451I	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	82	0	0	58	22	27.5	-	-	-	A	51263178	C	A	51263178	3	1	705	1	0	0	0	0	1	0	0	0	4723	797	28	4	1409	4	DOCK3	3	51263178	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	8508439	51263178	146759252	13	61165										
MYLK	0	genome.wustl.edu	37	chr3	123451949	123451949	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	caggctttggaatcccggaaActacagggccaggtaaagaa	12	9	0	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	3	123451949	123451949	A	C	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.1310	p.V437G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	22	0	0	14	5	26.32	-	-	-	C	123451949	A	C	123451949	3	2	705	1	0	0	0	0	1	0	0	0	10128	57	2	5	4530	5	MYLK	3	123451949	Missense_Mutation	SNP	A	TCGA-D8-A1XF-01A-11D-A14G-09	72188771	123451949	74570481	14	61166										
TRAM1L1	0	genome.wustl.edu	37	chr4	118005644	118005644	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gcttggatcgtgcaactggaCgacagaacagcaattttagc	11	9	0	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	4	118005644	118005644	C	A	SNP	TRAM1L1	ENST00000310754	human	ensembl	69_37n	-1	known	silent	c.906	p.S302	0.037	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599	51	0	0	61	16	20.78	-	-	-	A	118005644	C	A	118005644	2	1	705	1	0	0	0	0	0	0	0	1	16548	523	19	3		3	TRAM1L1	4	118005644	Silent	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		118005644	73148632	15	61167										
RAD1	0	genome.wustl.edu	37	chr5	34909405	34909405	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aatgaaatgcttccatcaaaTcagaatctttgggatagtca	7	7	4	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	5	34909405	34909405	T	C	SNP	RAD1	ENST00000341754	human	ensembl	69_37n	-1	known	missense	c.623	p.D208G	1.000	pfam_Rad1_Rec1_Rad17,prints_Rad1_repair	pfam_Rad1_Rec1_Rad17,prints_Rad1_Rec1_Rad17,prints_Rad1_repair	-	no_errors	RAD1	HGNC	ENSG00000113456	47	0	0	22	9	29.03	-	-	-	C	34909405	T	C	34909405	3	2	705	1	0	0	0	0	1	0	0	0	13061	1435	50	5	233	5	RAD1	5	34909405	Missense_Mutation	SNP	T	TCGA-D8-A1XF-01A-11D-A14G-09		34909405	146005855	16	61168										
KIAA0319	0	genome.wustl.edu	37	chr6	24581158	24581158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tcttacaccggcttaccaggCttaacagtgacattgacaaa	7	11	1	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	6	24581158	24581158	C	A	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.1275	p.K425N	0.999	pfam_PKD/REJ-like,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	68	0	0	39	11	22	-	-	-	A	24581158	C	A	24581158	3	1	705	1	0	0	0	0	1	0	0	0	8220	796	28	4	2003	4	KIAA0319	6	24581158	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		24581158	146533909	17	61169										
TNRC18	0	genome.wustl.edu	37	chr7	5352597	5352599	+	In_Frame_Del	DEL	GAG	GAG	-													0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aggaggaagacgaagaggaaGaggaggaggaggaagaggag							TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	7	5352597	5352599	GAG	-	DEL	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	in_frame_del	c.7925_7923	p.S2645in_frame_del	0.984:0.989:0.972	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	10	0	0	4	2	33.33	-	-	-	-	5352599	GAG	-	5352597	7	5	705	1	0	1	0	1	0	0	0	0	16434	942	33	0	997	0	TNRC18	7	5352597	In_Frame_Del	DEL	GAG	TCGA-D8-A1XF-01A-11D-A14G-09		5352597	153786066	18	61170										
DLC1	0	genome.wustl.edu	37	chr8	13356703	13356703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aaaaaccactcttctccaggCcattttcagctgacattcca	4	14	3	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	8	13356703	13356703	C	T	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.878	p.G293D	0.977	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	117	0	0	15	75	83.33	-	-	-	T	13356703	C	T	13356703	3	4	705	1	0	0	0	0	1	0	0	0	4586	739	26	4	3861	4	DLC1	8	13356703	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		13356703	133007319	19	61171										
ZFHX4	0	genome.wustl.edu	37	chr8	77764795	77764795	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	taagtgaaggtgaaggactcAaagaaggcaaagacacaaag	12	5	1	4			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	8	77764795	77764795	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.5638	p.K1880E	0.999	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	35	0	0	32	29	47.54	-	-	-	G	77764795	A	G	77764795	3	3	705	1	0	0	0	0	1	0	0	0	17731	131	5	5	5672	5	ZFHX4	8	77764795	Missense_Mutation	SNP	A	TCGA-D8-A1XF-01A-11D-A14G-09	64408092	77764795	68599227	20	61172										
SARDH	0	genome.wustl.edu	37	chr9	136568111	136568111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	ggtaggcgtagtcctcgtgcGcgcggctcccgtaagccccg	15	15	0	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	9	136568111	136568111	G	A	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	missense	c.1595	p.A532V	0.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	9	0	0	10	4	28.57	-	-	-	A	136568111	G	A	136568111	3	1	705	1	0	0	0	0	1	0	0	0	13928	1087	38	1	1197	1	SARDH	9	136568111	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		136568111	4645320	21	61173										
RUFY2	0	genome.wustl.edu	37	chr10	70156614	70156614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	atgagggctaatcgaagccaCgctcttgctcgacccagagg	12	12	1	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	10	70156614	70156614	C	T	SNP	RUFY2	ENST00000466493	human	ensembl	69_37n	-1	known	missense	c.362	p.R121H	0.142	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RUFY2	HGNC	ENSG00000204130	57	0	0	20	8	28.57	-	-	-	T	70156614	C	T	70156614	3	4	705	1	0	0	0	0	1	0	0	0	13825	523	19	1	1672	1	RUFY2	10	70156614	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		70156614	65378133	22	61174										
PPRC1	0	genome.wustl.edu	37	chr10	103897671	103897671	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	ctctcggctgggcccatctcTgagggacaaggacctggaaa	13	12	2	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	10	103897671	103897671	T	A	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.218	p.L73Q	0.509	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	58	0	0	17	14	45.16	-	-	-	A	103897671	T	A	103897671	3	1	705	1	0	0	0	0	1	0	0	0	12487	1580	55	5	224	5	PPRC1	10	103897671	Missense_Mutation	SNP	T	TCGA-D8-A1XF-01A-11D-A14G-09	33741057	103897671	31637076	23	61175										
NRAP	0	genome.wustl.edu	37	chr10	115351979	115351979	+	Frame_Shift_Del	DEL	G	G	-													0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	ggcgatctccctagatgcccGggcagtctggaaggggatgg							TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	10	115351979	115351979	G	-	DEL	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	frame_shift_del	c.4642	p.R1548fs	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	59	0	0	13	2	13.33	-	-	-	-	115351979	G	-	115351979	7	5	705	1	0	1	0	1	0	0	0	0	10711	1115	39	0	590	0	NRAP	10	115351979	Frame_Shift_Del	DEL	G	TCGA-D8-A1XF-01A-11D-A14G-09	11454308	115351979	20182768	24	61176										
SPTBN2	0	genome.wustl.edu	37	chr11	66457401	66457401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	gttcttgatgactagatccgCggaggacacatccctggggg	14	10	1	3			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	11	66457401	66457401	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.5824	p.A1942T	0.999	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	65	0	0	6	30	83.33	-	-	-	T	66457401	C	T	66457401	3	4	705	1	0	0	0	0	1	0	0	0	15211	768	27	1	1388	1	SPTBN2	11	66457401	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		66457401	68549115	25	61177										
OSBPL8	0	genome.wustl.edu	37	chr12	76791544	76791544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	agccatccttttttgatggaCgttcaatgatttcacaggca	8	9	2	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	12	76791544	76791544	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.602	p.R201H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	74	0	0	66	24	26.37	-	-	-	T	76791544	C	T	76791544	3	4	705	1	0	0	0	0	1	0	0	0	11356	536	19	1	2135	1	OSBPL8	12	76791544	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		76791544	57060351	26	61178										
CUL4A	0	genome.wustl.edu	37	chr13	113898800	113898800	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	ctggagcggacgttggacaaGatcatgatcctgttcaggtt	13	8	2	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	13	113898800	113898800	G	C	SNP	CUL4A	ENST00000375440	human	ensembl	69_37n	1	known	missense	c.1305	p.K435N	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4A	HGNC	ENSG00000139842	54	0	0	23	19	45.24	-	-	-	C	113898800	G	C	113898800	3	2	705	1	0	0	0	0	1	0	0	0	4088	933	33	2	1351	2	CUL4A	13	113898800	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		113898800	1271078	27	61179										
PLA2G4D	0	genome.wustl.edu	37	chr15	42374520	42374520	+	Frame_Shift_Del	DEL	A	A	-													0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tcacctccttcccaatggtcAagggcctcaggggcacagtg							TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	15	42374520	42374520	A	-	DEL	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	frame_shift_del	c.740	p.L247fs	0.183	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	58	0	0	16	2	11.11	-	-	-	-	42374520	A	-	42374520	7	5	705	1	0	1	0	1	0	0	0	0	12078	131	5	0	1764	0	PLA2G4D	15	42374520	Frame_Shift_Del	DEL	A	TCGA-D8-A1XF-01A-11D-A14G-09		42374520	60156872	28	61180										
MVP	0	genome.wustl.edu	37	chr16	29851675	29851675	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	cactggctcatccgcggaccCctggagtatgtgccatctgc	11	15	2	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	16	29851675	29851675	C	A	SNP	MVP	ENST00000357402	human	ensembl	69_37n	1	known	silent	c.1086	p.P362	1.000	pfam_Vault_N	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	23	0	0	11	4	26.67	-	-	-	A	29851675	C	A	29851675	2	1	705	1	0	0	0	0	0	0	0	1	10068	610	22	4		4	MVP	16	29851675	Silent	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		29851675	60503078	29	61181										
CNGB1	0	genome.wustl.edu	37	chr16	57921789	57921789	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aactcttgctgctttgcagcCgcctccagcgcggccagttc	10	16	1	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	16	57921789	57921789	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.3432	p.A1144	0.035	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	52	0	0	15	23	58.97	-	-	-	T	57921789	C	T	57921789	2	4	705	1	0	0	0	0	0	0	0	1	3630	639	23	1		1	CNGB1	16	57921789	Silent	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09	28070114	57921789	32432964	30	61182										
MUC16	0	genome.wustl.edu	37	chr19	9058138	9058138	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tgagcttgtatccaacacttCtgtagtcttcaccaggcctg	8	12	3	1			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	19	9058138	9058138	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.29308	p.E9770K	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	70	0	0	34	10	22.73	-	-	-	T	9058138	C	T	9058138	3	4	705	1	0	0	0	0	1	0	0	0	10045	922	32	2	14543	2	MUC16	19	9058138	Missense_Mutation	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		9058138	50070845	31	61183										
ARHGAP33	0	genome.wustl.edu	37	chr19	36269498	36269498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	cccccgagggtgccagggctGcccaggtaacctgcttgttg	14	14	0	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	19	36269498	36269498	G	T	SNP	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	missense	c.403	p.A135S	1.000	superfamily_Phox	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	25	0	0	18	4	18.18	-	-	-	T	36269498	G	T	36269498	3	4	705	1	0	0	0	0	1	0	0	0	884	1319	46	4	421	4	ARHGAP33	19	36269498	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	27211360	36269498	22859485	32	61184										
CYP2A13	0	genome.wustl.edu	37	chr19	41596463	41596463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	cagttcacggcaacctccacGgggcaggtaactggctgcag	13	13	1	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	19	41596463	41596463	G	A	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	silent	c.648	p.T216	0.037	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	36	0	0	18	6	25	-	-	-	A	41596463	G	A	41596463	2	1	705	1	0	0	0	0	0	0	0	1	4192	1103	39	1		1	CYP2A13	19	41596463	Silent	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	5326965	41596463	17532520	33	61185										
MED25	0	genome.wustl.edu	37	chr19	50333407	50333407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	cagtccccctgcctcccgccGcaccctcaggtgccactctc	7	23	2	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	19	50333407	50333407	G	A	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	missense	c.751	p.A251T	0.000	pfam_Mediator_Med25_SD1	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	17	0	0	3	5	62.5	-	-	-	A	50333407	G	A	50333407	3	1	705	1	0	0	0	0	1	0	0	0	9514	1087	38	1	777	1	MED25	19	50333407	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	8736944	50333407	8795576	34	61186										
KLK14	0	genome.wustl.edu	37	chr19	51584934	51584934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	atggccaccaattatcttgtTctcatcctcttggctctgtg	7	12	4	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	19	51584934	51584934	T	C	SNP	KLK14	ENST00000156499	human	ensembl	69_37n	-1	known	missense	c.115	p.N39D	0.323	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK14	HGNC	ENSG00000129437	28	0	0	15	7	31.82	-	-	-	C	51584934	T	C	51584934	3	2	705	1	0	0	0	0	1	0	0	0	8455	1783	62	5	704	5	KLK14	19	51584934	Missense_Mutation	SNP	T	TCGA-D8-A1XF-01A-11D-A14G-09	1251527	51584934	7544049	35	61187										
SLC13A3	0	genome.wustl.edu	37	chr20	45228668	45228668	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	agtgtgtaggccgtttctccGcacagcagctaggaggaaag	14	9	1	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	20	45228668	45228668	G	C	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.550	p.R184G	0.142	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	46	0	0	68	22	24.44	-	-	-	C	45228668	G	C	45228668	3	2	705	1	0	0	0	0	1	0	0	0	14482	1086	38	3	1298	3	SLC13A3	20	45228668	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		45228668	17796852	36	61188										
AP1B1	0	genome.wustl.edu	37	chr22	29727809	29727809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	agaggctccatcttcatgacCgagcccaccgtgctgagagg	12	13	2	3			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	22	29727809	29727809	C	T	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	silent	c.2406	p.S802	0.162	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	49	0	0	19	11	36.67	-	-	-	T	29727809	C	T	29727809	2	4	705	1	0	0	0	0	0	0	0	1	732	639	23	1		1	AP1B1	22	29727809	Silent	SNP	C	TCGA-D8-A1XF-01A-11D-A14G-09		29727809	21576757	37	61189										
KCNJ4	0	genome.wustl.edu	37	chr22	38823442	38823442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	tggtccaggggcaggtactcGccctcctgggtcatgtaggg	16	11	1	0			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	22	38823442	38823442	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	69_37n	-1	known	silent	c.696	p.G232	0.130	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135	20	0	0	13	7	33.33	-	-	-	A	38823442	G	A	38823442	2	1	705	1	0	0	0	0	0	0	0	1	8107	1074	38	1		1	KCNJ4	22	38823442	Silent	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09	9095633	38823442	12481124	38	61190										
MTM1	0	genome.wustl.edu	37	chrX	149783132	149783132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	3	0.824520108214693	1.19690721649485	3.98969072164948	0.88659793814433	1	1	0	aaaaatgggaggcgcgacaaGtagaggagaaaattcctatg	13	5	0	2			TCGA-D8-A1XF-01A-11D-A14G-09	TCGA-D8-A1XF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e1587f32-2ff9-40f3-97dd-b45b0f14be46	6218f631-47be-4e92-a6fb-d0cd09bddca7	X	149783132	149783132	G	T	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.302	p.S101I	1.000	NULL	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	72	0	0	33	4	10.81	-	-	-	T	149783132	G	T	149783132	3	4	705	1	0	0	0	0	1	0	0	0	10009	1029	36	4	316	4	MTM1	23	149783132	Missense_Mutation	SNP	G	TCGA-D8-A1XF-01A-11D-A14G-09		149783132	5487428	39	61191										
PXDN	0	genome.wustl.edu	37	chr2	1670036	1670036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	cgctgtcaatgttgttggtcGcagagcacgcatactctccg	11	12	2	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	1670036	1670036	G	T	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.1241	p.A414E	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	56	0	0	32	4	11.11	-	-	-	T	1670036	G	T	1670036	3	4	706	1	0	0	0	0	1	0	0	0	12930	1087	38	3	3254	3	PXDN	2	1670036	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09		1670036	241529337	1	61192										
ST6GAL2	0	genome.wustl.edu	37	chr2	107423302	107423302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gccccgagggtgcaggctgcGtcgtagtacagctcgtggta	16	11	0	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	107423302	107423302	G	A	SNP	ST6GAL2	ENST00000361803	human	ensembl	69_37n	-1	known	missense	c.118	p.R40C	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ST6GAL2	HGNC	ENSG00000144057	39	0	0	24	10	29.41	-	-	-	A	107423302	G	A	107423302	3	1	706	1	0	0	0	0	1	0	0	0	15313	1136	40	1	171	1	ST6GAL2	2	107423302	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09	105753266	107423302	135776071	2	61193										
GLI2	0	genome.wustl.edu	37	chr2	121747069	121747070	+	Frame_Shift_Ins	INS	-	-	A													0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gtccgcaaggcctacaggctINSagccctgggggcctggacag							TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	121747069	121747070	-	A	INS	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	frame_shift_ins	c.3579_3580	p.S1193fs	0.000:0.021	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	10	0	0	10	4	28.57	-	-	-	A	121747070	-	A	121747069	7	5	706	1	0	1	1	0	0	0	0	0	6490	1509	53	0	3629	0	GLI2	2	121747069	Frame_Shift_Ins	INS	-	TCGA-D8-A1XG-01A-11D-A14G-09	14323767	121747069	121452304	3	61194										
ATP2B2	0	genome.wustl.edu	37	chr3	10370591	10370591	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gtcaggttgatcccactgtcGatggcgctgttgttcttgtt	12	9	2	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	10370591	10370591	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	silent	c.3639	p.I1213	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	131	0	0	56	39	41.05	-	-	-	A	10370591	G	A	10370591	2	1	706	1	0	0	0	0	0	0	0	1	1144	1048	37	1		1	ATP2B2	3	10370591	Silent	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09		10370591	187651839	4	61195										
PHLDB2	0	genome.wustl.edu	37	chr3	111632438	111632438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gccagcttctttacccccagGagcaccaggaatgatgaact	9	13	1	2			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	111632438	111632438	G	T	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.1608	p.R536S	0.991	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	71	0	0	53	23	30.26	-	-	-	T	111632438	G	T	111632438	3	4	706	1	0	0	0	0	1	0	0	0	11926	1165	41	2	1699	2	PHLDB2	3	111632438	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09	101261847	111632438	86389992	5	61196										
SEMA5B	0	genome.wustl.edu	37	chr3	122645475	122645475	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	tccactgcgttctcccgcagGaagaagtatgcaaacagccc	9	14	1	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	122645475	122645475	G	T	SNP	SEMA5B	ENST00000451055	human	ensembl	69_37n	-1	known	missense	c.1062	p.F354L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	32	0	0	11	9	45	-	-	-	T	122645475	G	T	122645475	3	4	706	1	0	0	0	0	1	0	0	0	14126	1165	41	2	2615	2	SEMA5B	3	122645475	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09	11013037	122645475	75376955	6	61197										
CRIPAK	0	genome.wustl.edu	37	chr4	1388797	1388797	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	acacgtgccgacgtggagtgCccgcctgctcacacgtgccc							TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	1388797	1388797	C	-	DEL	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	frame_shift_del	c.498	p.P167fs	0.002	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	64	0	0	6	2	25	-	-	-	-	1388797	C	-	1388797	7	5	706	1	0	1	0	1	0	0	0	0	3907	747	26	0	500	0	CRIPAK	4	1388797	Frame_Shift_Del	DEL	C	TCGA-D8-A1XG-01A-11D-A14G-09		1388797	189765479	7	61198										
SETD7	0	genome.wustl.edu	37	chr4	140454468	140454468	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	aactcccccatcttcgtaagTgtaaactccctggccctgca	6	16	1	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	140454468	140454468	T	A	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	missense	c.223	p.T75S	1.000	pfam_MORN,pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	102	1	0.97	19	28	59.57	-	-	-	A	140454468	T	A	140454468	3	1	706	1	0	0	0	0	1	0	0	0	14224	1696	59	5	901	5	SETD7	4	140454468	Missense_Mutation	SNP	T	TCGA-D8-A1XG-01A-11D-A14G-09	139065671	140454468	50699808	8	61199										
CLDN22	0	genome.wustl.edu	37	chr4	184240759	184240759	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	cagttcttgatgatgatcttGtgtttgtgccactgcgtagt	11	7	2	3			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	184240759	184240759	G	T	SNP	CLDN22	ENST00000323319	human	ensembl	69_37n	-1	known	missense	c.613	p.Q205K	0.011	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN22	HGNC	ENSG00000177300	108	0	0	17	37	68.52	-	-	-	T	184240759	G	T	184240759	3	4	706	1	0	0	0	0	1	0	0	0	3513	1386	48	4	53	4	CLDN22	4	184240759	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09	43786291	184240759	6913517	9	61200										
MCTP1	0	genome.wustl.edu	37	chr5	94619756	94619756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	catctcgggcgcggtcccccCtcgggggaggctggggcgag	19	14	1	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	94619756	94619756	C	A	SNP	MCTP1	ENST00000515393	human	ensembl	69_37n	-1	known	missense	c.524	p.R175M	0.319	NULL	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	35	0	0	9	8	47.06	-	-	-	A	94619756	C	A	94619756	3	1	706	1	0	0	0	0	1	0	0	0	9471	681	24	4	2628	4	MCTP1	5	94619756	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09		94619756	86295504	10	61201										
FBN2	0	genome.wustl.edu	37	chr5	127597566	127597566	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gtatccagtgacaggtactgCcccttgttaaatcccattcc	7	13	0	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	127597566	127597566	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	silent	c.8226	p.G2742	1.000	pirsf_Fibrillin	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	80	0	0	42	41	49.4	-	-	-	T	127597566	C	T	127597566	2	4	706	1	0	0	0	0	0	0	0	1	5749	726	26	4		4	FBN2	5	127597566	Silent	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09	32977810	127597566	53317694	11	61202										
AFAP1L1	0	genome.wustl.edu	37	chr5	148709274	148709274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gaaccgagccgaggaggatgCccggaggtacttggtagaaa	16	8	0	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	148709274	148709274	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	69_37n	1	known	missense	c.1856	p.A619V	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510	56	0	0	38	24	38.71	-	-	-	T	148709274	C	T	148709274	3	4	706	1	0	0	0	0	1	0	0	0	354	739	26	4	1918	4	AFAP1L1	5	148709274	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09	21111708	148709274	32205986	12	61203										
NIPAL2	0	genome.wustl.edu	37	chr8	99217462	99217463	+	Frame_Shift_Del	DEL	AC	AC	-													0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	agacggcctttactgaaataAcagtcaatgaggctgaaaaa							TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	8	99217462	99217463	AC	-	DEL	NIPAL2	ENST00000341166	human	ensembl	69_37n	-1	known	frame_shift_del	c.668_667	p.V223fs	1.000:1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPAL2	HGNC	ENSG00000104361	59	0	0	57	29	33.72	-	-	-	-	99217463	AC	-	99217462	7	5	706	1	0	1	0	1	0	0	0	0	10497	43	2	0	462	0	NIPAL2	8	99217462	Frame_Shift_Del	DEL	AC	TCGA-D8-A1XG-01A-11D-A14G-09		99217462	47146560	13	61204										
ANGPTL2	0	genome.wustl.edu	37	chr9	129870656	129870656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	cttgcgcagcagcttcacctCgctcacaatgccgccgtcca	8	18	2	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	9	129870656	129870656	C	T	SNP	ANGPTL2	ENST00000373425	human	ensembl	69_37n	-1	known	missense	c.355	p.E119K	1.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL2	HGNC	ENSG00000136859	23	0	0	9	5	35.71	-	-	-	T	129870656	C	T	129870656	3	4	706	1	0	0	0	0	1	0	0	0	614	893	31	1	1142	1	ANGPTL2	9	129870656	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09		129870656	11342775	14	61205										
ADAM12	0	genome.wustl.edu	37	chr10	127734625	127734625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	ggcagctcagcctactcaccCctctgccgtggcactgcatt	9	17	3	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	10	127734625	127734625	C	T	SNP	ADAM12	ENST00000368679	human	ensembl	69_37n	-1	known	missense	c.2003	p.G668E	1.000	pfscan_EG-like_dom	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM12	HGNC	ENSG00000148848	59	0	0	48	27	36	-	-	-	T	127734625	C	T	127734625	3	4	706	1	0	0	0	0	1	0	0	0	236	637	22	4	862	4	ADAM12	10	127734625	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09		127734625	7800122	15	61206										
ELP4	0	genome.wustl.edu	37	chr11	31653874	31653874	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	aacagtcacagccttaccaaGttcctctatgttctccgtgg	7	13	3	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	31653874	31653874	G	C	SNP	ELP4	ENST00000395934	human	ensembl	69_37n	1	known	missense	c.849	p.K283N	0.559	pfam_Elongator_complex_protein_4	pfam_Elongator_complex_protein_4	-	no_errors	ELP4	HGNC	ENSG00000109911	67	0	0	47	41	46.59	-	-	-	C	31653874	G	C	31653874	3	2	706	1	0	0	0	0	1	0	0	0	5119	1020	36	4	875	4	ELP4	11	31653874	Missense_Mutation	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09		31653874	103352642	16	61207										
SLC22A10	0	genome.wustl.edu	37	chr11	63071594	63071594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	tgccagaaatgcagaccctgCgtgtggctttggcatgtctg	13	10	1	2			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	63071594	63071594	C	T	SNP	SLC22A10	ENST00000332793	human	ensembl	69_37n	1	known	missense	c.1300	p.R434C	0.506	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	143	0	0	145	31	17.61	-	-	-	T	63071594	C	T	63071594	3	4	706	1	0	0	0	0	1	0	0	0	14530	768	27	1	1330	1	SLC22A10	11	63071594	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09	31417720	63071594	71934922	17	61208										
PPP1CA	0	genome.wustl.edu	37	chr11	67166579	67166579	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	aggccctggtcaggcacatcTgtgggccgcatgatccgccg	14	14	2	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	67166579	67166579	T	A	SNP	PPP1CA	ENST00000312989	human	ensembl	69_37n	-1	known	silent	c.612	p.T204	0.746	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CA	HGNC	ENSG00000172531	24	0	0	10	8	44.44	-	-	-	A	67166579	T	A	67166579	2	1	706	1	0	0	0	0	0	0	0	1	12426	1567	55	5		5	PPP1CA	11	67166579	Silent	SNP	T	TCGA-D8-A1XG-01A-11D-A14G-09	4094985	67166579	67839937	18	61209										
NPAS3	0	genome.wustl.edu	37	chr14	34269262	34269262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	tccgacagcgccaaggactcGgacagcgcaggcgaggcggg	17	13	0	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	14	34269262	34269262	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	69_37n	1	known	silent	c.1749	p.S583	0.991	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS3	HGNC	ENSG00000151322	14	0	0	5	4	44.44	-	-	-	A	34269262	G	A	34269262	2	1	706	1	0	0	0	0	0	0	0	1	10636	1103	39	1		1	NPAS3	14	34269262	Silent	SNP	G	TCGA-D8-A1XG-01A-11D-A14G-09		34269262	73080278	19	61210										
LTBP2	0	genome.wustl.edu	37	chr14	74995708	74995708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	actcgctgccccatgctttgCccacgcggctgcagcagcat	10	17	0	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	14	74995708	74995708	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	missense	c.2105	p.G702D	1.000	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	30	0	0	11	5	31.25	-	-	-	T	74995708	C	T	74995708	3	4	706	1	0	0	0	0	1	0	0	0	9140	739	26	4	3464	4	LTBP2	14	74995708	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09	40726446	74995708	32353832	20	61211										
SQRDL	0	genome.wustl.edu	37	chr15	45954163	45954163	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	tgtttctcagagacatttctAccagccaatctggacactgg	8	11	3	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	15	45954163	45954163	A	C	SNP	SQRDL	ENST00000260324	human	ensembl	69_37n	1	known	missense	c.245	p.Y82S	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	SQRDL	HGNC	ENSG00000137767	84	0	0	71	21	22.83	-	-	-	C	45954163	A	C	45954163	3	2	706	1	0	0	0	0	1	0	0	0	15220	391	14	5	251	5	SQRDL	15	45954163	Missense_Mutation	SNP	A	TCGA-D8-A1XG-01A-11D-A14G-09		45954163	56577229	21	61212										
C3	0	genome.wustl.edu	37	chr19	6711025	6711025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	gtgtagtagcggatcttggcCtcgtgggcgcggtccattcg	16	10	1	0			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	19	6711025	6711025	C	A	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.1452	p.E484D	0.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	110	0	0	64	8	11.11	-	-	-	A	6711025	C	A	6711025	3	1	706	1	0	0	0	0	1	0	0	0	2224	680	24	4	3659	4	C3	19	6711025	Missense_Mutation	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09		6711025	52417958	22	61213										
RBL1	0	genome.wustl.edu	37	chr20	35689643	35689643	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	1	0.904872247913239	1.03679653679654	0	1.14047619047619	1	1	0	cgtaaatatctccgtccggtCagtggggtagaaggtgcaaa	13	8	2	1			TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	20	35689643	35689643	C	T	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	silent	c.1113	p.L371	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	86	0	0	39	28	41.79	-	-	-	T	35689643	C	T	35689643	2	4	706	1	0	0	0	0	0	0	0	1	13192	813	29	2		2	RBL1	20	35689643	Silent	SNP	C	TCGA-D8-A1XG-01A-11D-A14G-09		35689643	27335877	23	61214										
TXLNA	0	genome.wustl.edu	37	chr1	32647073	32647073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cagtagtcaatggagagaagGaaccctccaagggggatcca	13	9	1	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	32647073	32647073	G	A	SNP	TXLNA	ENST00000373609	human	ensembl	69_37n	1	known	missense	c.400	p.E134K	1.000	NULL	pfam_Taxilin	-	no_errors	TXLNA	HGNC	ENSG00000084652	37	0	0	21	4	16	-	-	-	A	32647073	G	A	32647073	3	1	707	1	0	0	0	0	1	0	0	0	16884	1175	41	2	406	2	TXLNA	1	32647073	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		32647073	216603548	1	61215										
LCK	0	genome.wustl.edu	37	chr1	32742227	32742227	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gggtactacaacgggcacacGaaggtggcggtgaagagcct	16	9	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	32742227	32742227	G	A	SNP	LCK	ENST00000333070	human	ensembl	69_37n	1	known	silent	c.804	p.T268	0.909	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866	40	0	0	45	17	27.42	-	-	-	A	32742227	G	A	32742227	2	1	707	1	0	0	0	0	0	0	0	1	8730	1045	37	1		1	LCK	1	32742227	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	95154	32742227	216508394	2	61216										
GJA9	0	genome.wustl.edu	37	chr1	39341552	39341552	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	agaacccagtatctaatgagGgagataggaaaggcctggtc	13	7	1	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	39341552	39341552	G	T	SNP	GJA9	ENST00000357771	human	ensembl	69_37n	-1	known	silent	c.219	p.S73	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233	54	0	0	72	36	33.33	-	-	-	T	39341552	G	T	39341552	2	4	707	1	0	0	0	0	0	0	0	1	6458	1219	43	4		4	GJA9	1	39341552	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	6599325	39341552	209909069	3	61217										
NASP	0	genome.wustl.edu	37	chr1	46079800	46079800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aatgaggaggaggagattggGaacctagagcttgcctggga	17	5	0	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	46079800	46079800	G	A	SNP	NASP	ENST00000531612	human	ensembl	69_37n	1	putative	missense	c.113	p.G38E	0.995	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NASP	HGNC	ENSG00000132780	118	0	0	148	21	12.35	-	-	-	A	46079800	G	A	46079800	3	1	707	1	0	0	0	0	1	0	0	0	10244	1161	41	2	1646	2	NASP	1	46079800	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	6738248	46079800	203170821	4	61218										
L1TD1	0	genome.wustl.edu	37	chr1	62672320	62672320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aatgtctgatgtatctactaGtgtacaatcaaaatttgcta	6	6	3	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	62672320	62672320	G	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	missense	c.20	p.S7I	0.000	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	9	0	0	14	11	44	-	-	-	T	62672320	G	T	62672320	3	4	707	1	0	0	0	0	1	0	0	0	8643	1029	36	4	22	4	L1TD1	1	62672320	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	16592520	62672320	186578301	5	61219										
COL11A1	0	genome.wustl.edu	37	chr1	103540280	103540280	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gtttcgtggttttcttcttaCaatcaacaatcattgtcaca	5	9	5	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	103540280	103540280	C	A	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.545	p.C182F	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	102	0	0	178	95	34.67	-	-	-	A	103540280	C	A	103540280	3	1	707	1	0	0	0	0	1	0	0	0	3697	478	17	4	5288	4	COL11A1	1	103540280	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	40867960	103540280	145710341	6	61220										
RYR2	0	genome.wustl.edu	37	chr1	237675055	237675055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	caagctgcctgaacaggagcGcaattacaacttacaaatgt	8	10	0	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	237675055	237675055	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2780	p.R927H	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	68	0	0	76	13	14.61	-	-	-	A	237675055	G	A	237675055	3	1	707	1	0	0	0	0	1	0	0	0	13855	1087	38	1	2880	1	RYR2	1	237675055	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	134134775	237675055	11575566	7	61221										
GREM2	0	genome.wustl.edu	37	chr1	240656385	240656385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gcactcgagctccacgaggaCggaggtgacgcgctggggct	17	12	0	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	1	240656385	240656385	C	T	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	missense	c.391	p.V131I	0.227	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	26	0	0	19	18	48.65	-	-	-	T	240656385	C	T	240656385	3	4	707	1	0	0	0	0	1	0	0	0	6813	536	19	1	119	1	GREM2	1	240656385	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	2981330	240656385	8594236	8	61222										
RAB10	0	genome.wustl.edu	37	chr2	26350787	26350787	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aatataaacatcgaaaaggcGttcctcacgttagctgaaga	8	8	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	2	26350787	26350787	G	A	SNP	RAB10	ENST00000264710	human	ensembl	69_37n	1	known	silent	c.486	p.A162	0.947	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB10	HGNC	ENSG00000084733	89	0	0	129	31	19.38	-	-	-	A	26350787	G	A	26350787	2	1	707	1	0	0	0	0	0	0	0	1	12973	1132	40	1		1	RAB10	2	26350787	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		26350787	216848586	9	61223										
CAD	0	genome.wustl.edu	37	chr2	27445851	27445851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ccgacctgtctttgggatctGcctgggacaccagctattgg	12	12	2	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	2	27445851	27445851	G	T	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.755	p.C252F	1.000	pfam_GATASE_1,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	64	0	0	45	13	22.41	-	-	-	T	27445851	G	T	27445851	3	4	707	1	0	0	0	0	1	0	0	0	2590	1319	46	4	777	4	CAD	2	27445851	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	1095064	27445851	215753522	10	61224										
SLC4A5	0	genome.wustl.edu	37	chr2	74474339	74474339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	agcgggtgatatatttgatgAtaaagctggcatctgtggcc	13	6	1	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	2	74474339	74474339	A	G	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.1883	p.I628T	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	73	0	0	74	29	28.16	-	-	-	G	74474339	A	G	74474339	3	3	707	1	0	0	0	0	1	0	0	0	14746	333	12	5	1582	5	SLC4A5	2	74474339	Missense_Mutation	SNP	A	TCGA-D8-A1XJ-01A-11D-A14K-09	47028488	74474339	168725034	11	61225										
GPR45	0	genome.wustl.edu	37	chr2	105859375	105859375	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ccaaagtgcctgagcggatcCgaaggagaatccagccaagc	12	12	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	2	105859375	105859375	C	T	SNP	GPR45	ENST00000258456	human	ensembl	69_37n	1	known	nonsense	c.1060	p.R354*	0.960	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR45	HGNC	ENSG00000135973	50	0	0	17	5	22.73	-	-	-	T	105859375	C	T	105859375	4	4	707	1	0	0	0	0	0	1	0	0	6746	644	23	1	1062	1	GPR45	2	105859375	Nonsense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	31385036	105859375	137339998	12	61226										
PTPN18	0	genome.wustl.edu	37	chr2	131127382	131127382	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gacatcatgctcaggaccctCaaggtcacattccagaaggt	9	12	4	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	2	131127382	131127382	C	A	SNP	PTPN18	ENST00000175756	human	ensembl	69_37n	1	known	silent	c.528	p.L176	0.085	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN18	HGNC	ENSG00000072135	107	0	0	65	24	26.97	-	-	-	A	131127382	C	A	131127382	2	1	707	1	0	0	0	0	0	0	0	1	12865	813	29	2		2	PTPN18	2	131127382	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	25268007	131127382	112071991	13	61227										
LRIG1	0	genome.wustl.edu	37	chr3	66433747	66433747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tgcggggcggagggttccccGtggctttgcattggagggcc	19	10	0	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	66433747	66433747	G	A	SNP	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	missense	c.2150	p.T717M	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	33	0	0	33	11	25	-	-	-	A	66433747	G	A	66433747	3	1	707	1	0	0	0	0	1	0	0	0	9010	1145	40	1	1151	1	LRIG1	3	66433747	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		66433747	131588683	14	61228										
DZIP1L	0	genome.wustl.edu	37	chr3	137807223	137807223	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	catggagcatcagctcacctGaatttctgtcttctctctca	6	13	6	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	137807223	137807223	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	nonsense	c.997	p.Q333*	0.949	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	53	0	0	38	18	32.14	-	-	-	A	137807223	G	A	137807223	4	1	707	1	0	0	0	0	0	1	0	0	4899	1299	45	2	1359	2	DZIP1L	3	137807223	Nonsense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	71373476	137807223	60215207	15	61229										
PRR23B	0	genome.wustl.edu	37	chr3	138739098	138739098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gcagaattccagctcgacgaCgacgtcctccctgacagcgc	10	16	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	138739098	138739098	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	missense	c.406	p.V136I	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	51	0	0	41	27	39.71	-	-	-	T	138739098	C	T	138739098	3	4	707	1	0	0	0	0	1	0	0	0	12676	536	19	1	395	1	PRR23B	3	138739098	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	931875	138739098	59283332	16	61230										
CLSTN2	0	genome.wustl.edu	37	chr3	139894828	139894828	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	catggatcgagacttcatatCatggagtcataactgagaac	9	8	3	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	139894828	139894828	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.145	p.H49Y	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	82	0	0	88	22	20	-	-	-	T	139894828	C	T	139894828	3	4	707	1	0	0	0	0	1	0	0	0	3592	826	29	2	151	2	CLSTN2	3	139894828	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	1155730	139894828	58127602	17	61231										
NDUFB5	0	genome.wustl.edu	37	chr3	179322679	179322679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ctggccggccccttggcactCgcctcggatttgggggcttc	14	15	0	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	179322679	179322679	C	T	SNP	NDUFB5	ENST00000259037	human	ensembl	69_37n	1	known	missense	c.76	p.R26C	0.000	pfam_NADH_UbQ_OxRdtase_B5_su	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_errors	NDUFB5	HGNC	ENSG00000136521	43	0	0	51	20	28.17	-	-	-	T	179322679	C	T	179322679	3	4	707	1	0	0	0	0	1	0	0	0	10356	884	31	1	78	1	NDUFB5	3	179322679	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	39427851	179322679	18699751	18	61232										
MUC4	0	genome.wustl.edu	37	chr3	195511643	195511643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ggtgacaggaagagaggtggCgtgacctgtggacactgagg	19	6	0	4			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	195511643	195511643	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.6808	p.A2270T	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	15	0	0	1295	185	12.45	-	-	-	T	195511643	C	T	195511643	3	4	707	1	0	0	0	0	1	0	0	0	10050	768	27	1		1	MUC4	3	195511643	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	16188964	195511643	2510787	19	61233										
KIAA0226	0	genome.wustl.edu	37	chr3	197402344	197402344	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gggaaagatgatgtcatcctCattctgacagaactcacaga	9	9	4	5			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	3	197402344	197402344	C	T	SNP	KIAA0226	ENST00000296343	human	ensembl	69_37n	-1	known	missense	c.2689	p.E897K	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016	76	0	0	61	13	17.57	-	-	-	T	197402344	C	T	197402344	3	4	707	1	0	0	0	0	1	0	0	0	8214	835	29	2	237	2	KIAA0226	3	197402344	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	1890701	197402344	620086	20	61234										
PPA2	0	genome.wustl.edu	37	chr4	106395125	106395125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	acagggccatagcacggcgcGacccggtccctgcactggtc	13	16	0	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	4	106395125	106395125	G	A	SNP	PPA2	ENST00000357415	human	ensembl	69_37n	-1	known	missense	c.83	p.S28L	0.012	NULL	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA2	HGNC	ENSG00000138777	8	0	0	7	6	46.15	-	-	-	A	106395125	G	A	106395125	3	1	707	1	0	0	0	0	1	0	0	0	12360	1059	37	1	969	1	PPA2	4	106395125	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		106395125	84759151	21	61235										
ADAD1	0	genome.wustl.edu	37	chr4	123332537	123332538	+	Frame_Shift_Del	DEL	AA	AA	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ctaaaggatcagcccagattAagtcacagttgtaagtatta							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	4	123332537	123332538	AA	-	DEL	ADAD1	ENST00000296513	human	ensembl	69_37n	1	known	frame_shift_del	c.1009_1010	p.K337fs	1.000:1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	66	0	0	85	32	26.89	-	-	-	-	123332538	AA	-	123332537	7	5	707	1	0	1	0	1	0	0	0	0	231	363	13	0	1035	0	ADAD1	4	123332537	Frame_Shift_Del	DEL	AA	TCGA-D8-A1XJ-01A-11D-A14K-09	16937412	123332537	67821739	22	61236										
SPRY1	0	genome.wustl.edu	37	chr4	124323620	124323620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ggtgttatgactggatccatCgcccagggtgcagatgtaag	14	8	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	4	124323620	124323620	C	T	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	1	known	missense	c.874	p.R292C	0.941	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	71	0	0	54	51	48.57	-	-	-	T	124323620	C	T	124323620	3	4	707	1	0	0	0	0	1	0	0	0	15196	884	31	1	876	1	SPRY1	4	124323620	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	991083	124323620	66830656	23	61237										
ANXA10	0	genome.wustl.edu	37	chr4	169085364	169085364	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tctagggagtaggcactgatGagaattgcctcattgaaata	11	6	2	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	4	169085364	169085364	G	A	SNP	ANXA10	ENST00000359299	human	ensembl	69_37n	1	known	missense	c.325	p.E109K	0.994	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511	60	0	0	76	56	42.42	-	-	-	A	169085364	G	A	169085364	3	1	707	1	0	0	0	0	1	0	0	0	714	1291	45	2	343	2	ANXA10	4	169085364	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	44761744	169085364	22068912	24	61238										
SCAMP1	0	genome.wustl.edu	37	chr5	77717661	77717661	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gtttctaaatatcttcggatGcttggcttggttttgtgttg	11	5	2	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	5	77717661	77717661	G	A	SNP	SCAMP1	ENST00000320280	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCAMP1	HGNC	ENSG00000085365	330	0	0	213	48	18.39	-	-	-	A	77717661	G	A	77717661	1	1	707	0	1	0	0	0	0	0	0	0	13957	1319	46	4		4	SCAMP1	5	77717661	RNA	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		77717661	103197599	25	61239										
VCAN	0	genome.wustl.edu	37	chr5	82817555	82817555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aacaaaaatatgaaacagaaGgtagtagtacaacaggattt	8	4	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	5	82817555	82817555	G	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.3430	p.G1144C	0.547	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	25	0	0	16	12	42.86	-	-	-	T	82817555	G	T	82817555	3	4	707	1	0	0	0	0	1	0	0	0	17235	1000	35	4	3452	4	VCAN	5	82817555	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	5099894	82817555	98097705	26	61240										
SYNGAP1	0	genome.wustl.edu	37	chr6	33403296	33403296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ccacactcctttctaggtaaCaacttcatcaggaacaaaat	4	12	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	6	33403296	33403296	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	69_37n	1	known	missense	c.668	p.T223I	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283	217	1	0.46	73	15	17.05	-	-	-	T	33403296	C	T	33403296	3	4	707	1	0	0	0	0	1	0	0	0	15539	478	17	4	694	4	SYNGAP1	6	33403296	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09		33403296	137711771	27	61241										
MAPK13	0	genome.wustl.edu	37	chr6	36106757	36106757	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ttgaacccttccgggaccctGaggaagagacggaggcccag	14	12	0	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	6	36106757	36106757	G	A	SNP	MAPK13	ENST00000211287	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	1.000	superfamily_Kinase-like_dom,prints_MAPK_p38	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_p38,prints_MAPK_JNK	-	no_errors	MAPK13	HGNC	ENSG00000156711	119	0	0	52	11	17.46	-	-	-	A	36106757	G	A	36106757	3	1	707	1	0	0	0	0	1	0	0	0	9346	1291	45	2	985	2	MAPK13	6	36106757	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	2703461	36106757	135008310	28	61242										
SPATS1	0	genome.wustl.edu	37	chr6	44337846	44337846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ttgagcctcttccacaaattCccaagtgagttctcttgtca	6	12	3	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	6	44337846	44337846	C	T	SNP	SPATS1	ENST00000288390	human	ensembl	69_37n	1	known	missense	c.754	p.P252S	0.847	NULL	NULL	-	no_errors	SPATS1	HGNC	ENSG00000249481	98	0	0	222	48	17.78	-	-	-	T	44337846	C	T	44337846	3	4	707	1	0	0	0	0	1	0	0	0	15109	855	30	2	776	2	SPATS1	6	44337846	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	8231089	44337846	126777221	29	61243										
COL12A1	0	genome.wustl.edu	37	chr6	75893097	75893097	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ctgacataagtcattgctttGccagtatttgtagatcctcc	7	10	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	6	75893097	75893097	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.1560	p.G520	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	65	0	0	75	29	27.88	-	-	-	A	75893097	G	A	75893097	2	1	707	1	0	0	0	0	0	0	0	1	3699	1306	46	4		4	COL12A1	6	75893097	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	31555251	75893097	95221970	30	61244										
BACH2	0	genome.wustl.edu	37	chr6	90718472	90718472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cacagagaatatcctttttcCgctggtcattgaggcccagg	10	11	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	6	90718472	90718472	C	T	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.92	p.R31Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	109	0	0	106	89	45.41	-	-	-	T	90718472	C	T	90718472	3	4	707	1	0	0	0	0	1	0	0	0	1288	652	23	1	2449	1	BACH2	6	90718472	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	14825375	90718472	80396595	31	61245										
HOXA4	0	genome.wustl.edu	37	chr7	27168854	27168854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ctctagaagattatatggagGagggaacgggtgtggaggtg	18	3	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	7	27168854	27168854	G	A	SNP	HOXA4	ENST00000360046	human	ensembl	69_37n	-1	known	missense	c.953	p.S318F	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia,pfscan_Homeodomain	-	no_errors	HOXA4	HGNC	ENSG00000197576	150	0	0	120	94	43.93	-	-	-	A	27168854	G	A	27168854	3	1	707	1	0	0	0	0	1	0	0	0	7345	1174	41	2	13	2	HOXA4	7	27168854	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		27168854	131969809	32	61246										
LANCL2	0	genome.wustl.edu	37	chr7	55466215	55466215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aagaacacttcggaatctgaAtggccgcagggtcaccttcc	10	12	2	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	7	55466215	55466215	A	G	SNP	LANCL2	ENST00000254770	human	ensembl	69_37n	1	known	missense	c.422	p.N141S	0.993	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434	35	0	0	41	17	29.31	-	-	-	G	55466215	A	G	55466215	3	3	707	1	0	0	0	0	1	0	0	0	8675	101	4	5	432	5	LANCL2	7	55466215	Missense_Mutation	SNP	A	TCGA-D8-A1XJ-01A-11D-A14K-09	28297361	55466215	103672448	33	61247										
ERICH1	0	genome.wustl.edu	37	chr8	614677	614677	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tgagattactctggcatggtCtagaaagcaaaaaacacaaa	8	7	2	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	8	614677	614677	C	G	SNP	ERICH1	ENST00000262109	human	ensembl	69_37n	-1	known	splice_site	c.1259-1	e6-1	0.995	-	-	-	no_errors	ERICH1	HGNC	ENSG00000104714	130	0	0	151	29	16.11	-	-	-	G	614677	C	G	614677	5	3	707	1	0	0	0	0	0	0	1	0	5267	927	32	2	77	2	ERICH1	8	614677	Splice_Site	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09		614677	145749345	34	61248										
KIAA0196	0	genome.wustl.edu	37	chr8	126059486	126059486	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	caggatttctctgcagagtcGaccaataaacgttacagact	8	10	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	8	126059486	126059486	G	A	SNP	KIAA0196	ENST00000318410	human	ensembl	69_37n	-1	known	nonsense	c.2467	p.R823*	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	104	0	0	120	27	18.24	-	-	-	A	126059486	G	A	126059486	4	1	707	1	0	0	0	0	0	1	0	0	8213	1066	37	1	1052	1	KIAA0196	8	126059486	Nonsense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	125444809	126059486	20304536	35	61249										
TEK	0	genome.wustl.edu	37	chr9	27183605	27183605	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aagccggatgggacagtgctCcatgtaagagccattcttaa	11	9	1	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	9	27183605	27183605	C	G	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	0.050	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	19	0	0	45	12	21.05	-	-	-	G	27183605	C	G	27183605	2	3	707	1	0	0	0	0	0	0	0	1	15846	842	30	2		2	TEK	9	27183605	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09		27183605	114029826	36	61250										
FAM75A2	0	genome.wustl.edu	37	chr9	39890233	39890233	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gggcttcccaggagctacatGaccttatggcagccagaagg	13	11	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	9	39890233	39890233	G	T	SNP	FAM75A2	ENST00000456183	human	ensembl	69_37n	1	known	missense	c.3220	p.D1074Y	0.001	NULL	NULL	-	no_errors	FAM75A2	HGNC	ENSG00000204848	13	0	0	9	5	35.71	-	-	-	T	39890233	G	T	39890233	3	4	707	1	0	0	0	0	1	0	0	0	5665	1290	45	2	7294	2	FAM75A2	9	39890233	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	12706628	39890233	101323198	37	61251										
WDR85	0	genome.wustl.edu	37	chr9	140449871	140449871	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gtgagtggcttcattccactCtggggtctggcatggccctc	13	12	3	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	9	140449871	140449871	C	T	SNP	WDR85	ENST00000277540	human	ensembl	69_37n	-1	known	silent	c.1179	p.Q393	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR85	HGNC	ENSG00000148399	43	0	0	136	39	22.29	-	-	-	T	140449871	C	T	140449871	2	4	707	1	0	0	0	0	0	0	0	1	17430	912	32	2		2	WDR85	9	140449871	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	100559638	140449871	763560	38	61252										
PARD3	0	genome.wustl.edu	37	chr10	34649154	34649154	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cagaaattccctggtgccatCaggtgtaagaacaatatcct	8	10	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	10	34649154	34649154	C	T	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.1741	p.D581N	1.000	superfamily_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	50	0	0	55	26	32.1	-	-	-	T	34649154	C	T	34649154	3	4	707	1	0	0	0	0	1	0	0	0	11516	826	29	2	2416	2	PARD3	10	34649154	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09		34649154	100885593	39	61253										
FANK1	0	genome.wustl.edu	37	chr10	127697978	127697978	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tagaagaaaggaaaaaaaagCagaggccaaagaagtcttgt	11	4	1	4			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	10	127697978	127697978	C	T	SNP	FANK1	ENST00000368693	human	ensembl	69_37n	1	known	nonsense	c.1009	p.Q337*	0.014	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	101	0	0	84	21	20	-	-	-	T	127697978	C	T	127697978	4	4	707	1	0	0	0	0	0	1	0	0	5718	711	25	4	1051	4	FANK1	10	127697978	Nonsense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	93048824	127697978	7836769	40	61254										
KCNQ1	0	genome.wustl.edu	37	chr11	2683237	2683237	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gtgagcatgccccatttcatGagaaccaacagcttcgccga	9	13	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	11	2683237	2683237	G	A	SNP	KCNQ1	ENST00000155840	human	ensembl	69_37n	1	known	missense	c.1440	p.M480I	0.909	pfam_K_chnl_volt-dep_KCNQ_C,prints_K_chnl_volt-dep_KCQN1	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918	33	0	0	60	12	16.67	-	-	-	A	2683237	G	A	2683237	3	1	707	1	0	0	0	0	1	0	0	0	8136	1290	45	2	1491	2	KCNQ1	11	2683237	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		2683237	132323279	41	61255										
MICALCL	0	genome.wustl.edu	37	chr11	12371384	12371384	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tgctgttgatttcttaagcaGattcaggcacacaggatgaa	10	7	2	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	11	12371384	12371384	G	A	SNP	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	splice_site	c.1730-1	e6-1	1.000	-	-	-	no_errors	MICALCL	HGNC	ENSG00000133808	51	0	0	55	21	27.63	-	-	-	A	12371384	G	A	12371384	5	1	707	1	0	0	0	0	0	0	1	0	9643	956	33	2	1751	2	MICALCL	11	12371384	Splice_Site	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	9688147	12371384	122635132	42	61256										
NDUFS8	0	genome.wustl.edu	37	chr11	67803732	67803732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tcccgcaggccatcaccatcGaggctgagccaagagctgat	11	14	1	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	11	67803732	67803732	G	A	SNP	NDUFS8	ENST00000313468	human	ensembl	69_37n	1	known	missense	c.385	p.E129K	1.000	tigrfam_NADH_quinone_OxRdtase_chainI	pfam_4Fe4S-bd_dom,tigrfam_NADH_quinone_OxRdtase_chainI	-	no_errors	NDUFS8	HGNC	ENSG00000110717	12	0	0	18	7	28	-	-	-	A	67803732	G	A	67803732	3	1	707	1	0	0	0	0	1	0	0	0	10370	1059	37	1	403	1	NDUFS8	11	67803732	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	55432348	67803732	67202784	43	61257										
DDX6	0	genome.wustl.edu	37	chr11	118629524	118629524	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gcagtgtactttttggcgctCagttacatatgcgtagtact	10	8	1	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	11	118629524	118629524	C	T	SNP	DDX6	ENST00000264018	human	ensembl	69_37n	-1	known	missense	c.952	p.E318K	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX6	HGNC	ENSG00000110367	72	0	0	114	19	14.29	-	-	-	T	118629524	C	T	118629524	3	4	707	1	0	0	0	0	1	0	0	0	4408	835	29	2	519	2	DDX6	11	118629524	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	50825792	118629524	16376992	44	61258										
NLRX1	0	genome.wustl.edu	37	chr11	119043070	119043070	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tccttctctctgtagatgatCgtatccccttcctgatccac	5	15	2	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	11	119043070	119043070	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	missense	c.76	p.R26C	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	128	0	0	124	24	16.22	-	-	-	T	119043070	C	T	119043070	3	4	707	1	0	0	0	0	1	0	0	0	10557	884	31	1	82	1	NLRX1	11	119043070	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	413546	119043070	15963446	45	61259										
CACNA1C	0	genome.wustl.edu	37	chr12	2558201	2558201	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gaagcgtttttaaaagtaatCgcctatggactcctctttca	7	9	2	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	12	2558201	2558201	C	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	silent	c.537	p.I179	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	79	0	0	97	25	20.49	-	-	-	A	2558201	C	A	2558201	2	1	707	1	0	0	0	0	0	0	0	1	2565	874	31	3		3	CACNA1C	12	2558201	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09		2558201	131293694	46	61260										
PPHLN1	0	genome.wustl.edu	37	chr12	42778795	42778796	+	Frame_Shift_Del	DEL	AG	AG	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	agaatgaaggaaatcctgaaAgaggtgagttttgagctaga							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	12	42778795	42778796	AG	-	DEL	PPHLN1	ENST00000395568	human	ensembl	69_37n	1	known	frame_shift_del	c.565_566	p.D190fs	1.000:1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	76	0	0	133	15	10.14	-	-	-	-	42778796	AG	-	42778795	7	5	707	1	0	1	0	1	0	0	0	0	12388	64	3	0	608	0	PPHLN1	12	42778795	Frame_Shift_Del	DEL	AG	TCGA-D8-A1XJ-01A-11D-A14K-09	40220594	42778795	91073100	47	61261										
OR6C74	0	genome.wustl.edu	37	chr12	55641891	55641891	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cattaaataaagggatagctCtgctcagcacttctgttgcc	8	10	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	12	55641891	55641891	C	T	SNP	OR6C74	ENST00000343870	human	ensembl	69_37n	1	known	silent	c.820	p.L274	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706	25	0	0	28	11	28.21	-	-	-	T	55641891	C	T	55641891	2	4	707	1	0	0	0	0	0	0	0	1	11271	912	32	2		2	OR6C74	12	55641891	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	12863096	55641891	78210004	48	61262										
APEX1	0	genome.wustl.edu	37	chr14	20924089	20924089	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	atagagccagaggccaagaaGagtaagacggccgcaaagaa	13	8	0	6			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	14	20924089	20924089	G	A	SNP	APEX1	ENST00000554325	human	ensembl	69_37n	1	known	missense	c.145	p.E49K	1.000	NULL	NULL	-	no_errors	APEX1	HGNC	ENSG00000100823	71	0	0	42	7	14.29	-	-	-	A	20924089	G	A	20924089	3	1	707	1	0	0	0	0	1	0	0	0	770	933	33	2	81	2	APEX1	14	20924089	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		20924089	86425451	49	61263										
PNN	0	genome.wustl.edu	37	chr14	39648302	39648302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	acttaacttttagcaaaagcGgcgccaggaaattgaacaaa	8	8	0	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	14	39648302	39648302	G	A	SNP	PNN	ENST00000216832	human	ensembl	69_37n	1	known	missense	c.506	p.R169Q	1.000	pfam_Pinin_SDK_MemA	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941	45	0	0	45	19	29.23	-	-	-	A	39648302	G	A	39648302	3	1	707	1	0	0	0	0	1	0	0	0	12234	1116	39	1	532	1	PNN	14	39648302	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	18724213	39648302	67701238	50	61264										
DVL2	0	genome.wustl.edu	37	chr17	7129292	7129292	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cccaggtctctgactggaggGgcccccggaggctgcactgc	15	15	1	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	7129292	7129292	G	A	SNP	DVL2	ENST00000005340	human	ensembl	69_37n	-1	known	silent	c.2103	p.A701	0.931	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,prints_Dishevelled_2,prints_Dishevelled,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ	-	no_errors	DVL2	HGNC	ENSG00000004975	22	0	0	13	6	31.58	-	-	-	A	7129292	G	A	7129292	2	1	707	1	0	0	0	0	0	0	0	1	4871	1219	43	4		4	DVL2	17	7129292	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		7129292	74065918	51	61265										
TP53	0	genome.wustl.edu	37	chr17	7577094	7577094	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	attctcttcctctgtgcgccGgtctctcccaggacaggcac	9	16	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	7577094	7577094	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.844	p.R282G	0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	204	0	0	23	39	62.9	-	-	-	C	7577094	G	C	7577094	3	2	707	1	0	0	0	0	1	0	0	0	16477	1115	39	3	442	3	TP53	17	7577094	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	447802	7577094	73618116	52	61266										
CHD3	0	genome.wustl.edu	37	chr17	7808966	7808966	+	Frame_Shift_Del	DEL	G	G	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	acagtcaaagaggcagctccGgaatgagaaagataagccac							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	7808966	7808966	G	-	DEL	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	frame_shift_del	c.4166	p.N1390fs	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	110	0	0	17	2	10.53	-	-	-	-	7808966	G	-	7808966	7	5	707	1	0	1	0	1	0	0	0	0	3355	1116	39	0	4553	0	CHD3	17	7808966	Frame_Shift_Del	DEL	G	TCGA-D8-A1XJ-01A-11D-A14K-09	231872	7808966	73386244	53	61267										
MYH8	0	genome.wustl.edu	37	chr17	10307784	10307784	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ttccttcatggtggccatctCtttctcggtctctgcactct	7	14	5	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	10307784	10307784	C	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.2551	p.E851K	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	69	0	0	133	67	33.5	-	-	-	T	10307784	C	T	10307784	3	4	707	1	0	0	0	0	1	0	0	0	10113	922	32	2	3338	2	MYH8	17	10307784	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	2498818	10307784	70887426	54	61268										
HDAC5	0	genome.wustl.edu	37	chr17	42168760	42168760	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ccagcaggcagccaggaataGaggatgtgctcatgaacttg	13	9	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	42168760	42168760	G	A	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	missense	c.1268	p.S423F	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	11	0	0	11	5	31.25	-	-	-	A	42168760	G	A	42168760	3	1	707	1	0	0	0	0	1	0	0	0	7061	942	33	2	2171	2	HDAC5	17	42168760	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	31860976	42168760	39026450	55	61269										
ADAM11	0	genome.wustl.edu	37	chr17	42850750	42850750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ggcccggctcatggtctaccGacgggagggtctgcctgagc	16	13	3	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	42850750	42850750	G	A	SNP	ADAM11	ENST00000200557	human	ensembl	69_37n	1	known	missense	c.947	p.R316Q	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670	29	0	0	16	21	56.76	-	-	-	A	42850750	G	A	42850750	3	1	707	1	0	0	0	0	1	0	0	0	235	1058	37	1	989	1	ADAM11	17	42850750	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	681990	42850750	38344460	56	61270										
MAPT	0	genome.wustl.edu	37	chr17	44073872	44073872	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ttccaaccccacccacccggGagcccaagaaggtggcagtg	11	16	0	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	44073872	44073872	G	C	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	missense	c.1669	p.E557Q	1.000	prints_Tau_protein	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	9	0	0	2	7	77.78	-	-	-	C	44073872	G	C	44073872	3	2	707	1	0	0	0	0	1	0	0	0	9368	1175	41	2	1707	2	MAPT	17	44073872	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	1223122	44073872	37121338	57	61271										
OTOP2	0	genome.wustl.edu	37	chr17	72926997	72926997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tccagaacatgtttatcatcGagagccttcaccgaggaccg	9	12	2	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	17	72926997	72926997	G	A	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	missense	c.1267	p.E423K	1.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	69	0	0	29	18	38.3	-	-	-	A	72926997	G	A	72926997	3	1	707	1	0	0	0	0	1	0	0	0	11379	1059	37	1	1285	1	OTOP2	17	72926997	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	28853125	72926997	8268213	58	61272										
ANKRD12	0	genome.wustl.edu	37	chr18	9254875	9254875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tacttcattacatttatttcAtatttccactggtaaatctc	2	9	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	18	9254875	9254875	A	G	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.1610	p.H537R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	20	0	0	18	14	43.75	-	-	-	G	9254875	A	G	9254875	3	3	707	1	0	0	0	0	1	0	0	0	640	217	8	5	1640	5	ANKRD12	18	9254875	Missense_Mutation	SNP	A	TCGA-D8-A1XJ-01A-11D-A14K-09		9254875	68822373	59	61273										
NEDD4L	0	genome.wustl.edu	37	chr18	56054707	56054707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ttcctattgatttgattaaaAtttttgatgaaaatgagctg	7	3	0	5			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	18	56054707	56054707	A	C	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	missense	c.2524	p.I842L	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	73	0	0	40	6	13.04	-	-	-	C	56054707	A	C	56054707	3	2	707	1	0	0	0	0	1	0	0	0	10383	101	4	5	2658	5	NEDD4L	18	56054707	Missense_Mutation	SNP	A	TCGA-D8-A1XJ-01A-11D-A14K-09	46799832	56054707	22022541	60	61274										
FUT5	0	genome.wustl.edu	37	chr19	5866759	5866759	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aagtagctcaggtagcgggcGtggtccttgtccagctcctg	14	11	1	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	5866759	5866759	G	A	SNP	FUT5	ENST00000252675	human	ensembl	69_37n	-1	known	silent	c.978	p.H326	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	21	0	0	49	24	32.88	-	-	-	A	5866759	G	A	5866759	2	1	707	1	0	0	0	0	0	0	0	1	6156	1136	40	1		1	FUT5	19	5866759	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		5866759	53262224	61	61275										
ZNF563	0	genome.wustl.edu	37	chr19	12429836	12429836	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tatcttacatttatgaggtcGatctccagtgtgccttttca	7	9	3	1			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	12429836	12429836	G	A	SNP	ZNF563	ENST00000293725	human	ensembl	69_37n	-1	known	nonsense	c.1003	p.R335*	0.976	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868	119	0	0	182	104	36.36	-	-	-	A	12429836	G	A	12429836	4	1	707	1	0	0	0	0	0	1	0	0	18090	1066	37	1	431	1	ZNF563	19	12429836	Nonsense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	6563077	12429836	46699147	62	61276										
OR1I1	0	genome.wustl.edu	37	chr19	15198028	15198028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cattatcctggccatcatcaCggactctcacctccacacac	4	18	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	15198028	15198028	C	T	SNP	OR1I1	ENST00000209540	human	ensembl	69_37n	1	known	missense	c.152	p.T51M	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1I1	HGNC	ENSG00000094661	341	0	0	285	66	18.75	-	-	-	T	15198028	C	T	15198028	3	4	707	1	0	0	0	0	1	0	0	0	11031	536	19	1	154	1	OR1I1	19	15198028	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	2768192	15198028	43930955	63	61277										
ARHGEF1	0	genome.wustl.edu	37	chr19	42399493	42399493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gggaccggaatatcggggctCctgggcaggacacccctgga	16	12	0	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	42399493	42399493	C	T	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	missense	c.895	p.P299S	0.001	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	77	0	0	37	7	15.91	-	-	-	T	42399493	C	T	42399493	3	4	707	1	0	0	0	0	1	0	0	0	895	855	30	2	1040	2	ARHGEF1	19	42399493	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	27201465	42399493	16729490	64	61278										
ZNF551	0	genome.wustl.edu	37	chr19	58197960	58197960	+	Frame_Shift_Del	DEL	T	T	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gaaaactcacctcagtgagaTtaagatgtgtgtcccagtct							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	58197960	58197960	T	-	DEL	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	frame_shift_del	c.317	p.K107fs	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	67	0	0	48	6	11.11	-	-	-	-	58197960	T	-	58197960	7	5	707	1	0	1	0	1	0	0	0	0	18079	1493	52	0	279	0	ZNF551	19	58197960	Frame_Shift_Del	DEL	T	TCGA-D8-A1XJ-01A-11D-A14K-09	15798467	58197960	931023	65	61279	454	2								
ZNF551	0	genome.wustl.edu	37	chr19	58197963	58197966	+	Frame_Shift_Del	DEL	AGAT	AGAT	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aactcacctcagtgagattaAgatgtgtgtcccagtcttga							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	19	58197963	58197966	AGAT	-	DEL	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	frame_shift_del	c.320_323	p.K107fs	0.008:0.003:0.003:0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	67	0	0	45	6	11.76	-	-	-	-	58197966	AGAT	-	58197963	7	5	707	1	0	1	0	1	0	0	0	0	18079	72	3	0	282	0	ZNF551	19	58197963	Frame_Shift_Del	DEL	AGAT	TCGA-D8-A1XJ-01A-11D-A14K-09	3	58197963	931020	66	61280	454	2								
RRBP1	0	genome.wustl.edu	37	chr20	17639816	17639816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	cggccttcttgccctggttcTgggccccctcggccttcttg	11	17	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	20	17639816	17639816	T	G	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.1337	p.Q446P	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	10	0	0	8	6	42.86	-	-	-	G	17639816	T	G	17639816	3	3	707	1	0	0	0	0	1	0	0	0	13764	1595	55	5		5	RRBP1	20	17639816	Missense_Mutation	SNP	T	TCGA-D8-A1XJ-01A-11D-A14K-09		17639816	45385704	67	61281										
FAM65C	0	genome.wustl.edu	37	chr20	49219050	49219050	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tcagagctgaaggagtccatCtcaggcagctcctgactctg	11	12	3	3			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	20	49219050	49219050	C	T	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	silent	c.1218	p.E406	0.985	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	10	0	0	3	6	66.67	-	-	-	T	49219050	C	T	49219050	2	4	707	1	0	0	0	0	0	0	0	1	5646	912	32	2		2	FAM65C	20	49219050	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	31579234	49219050	13806470	68	61282										
TPD52L2	0	genome.wustl.edu	37	chr20	62505106	62505106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	caagaggaggctgggcctctCcaccctgggggagctgaaac	15	12	1	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	20	62505106	62505106	C	T	SNP	TPD52L2	ENST00000217121	human	ensembl	69_37n	1	known	missense	c.251	p.S84F	0.833	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L2	HGNC	ENSG00000101150	35	0	0	13	20	60.61	-	-	-	T	62505106	C	T	62505106	3	4	707	1	0	0	0	0	1	0	0	0	16495	855	30	2	261	2	TPD52L2	20	62505106	Missense_Mutation	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	13286056	62505106	520414	69	61283										
CLDN17	0	genome.wustl.edu	37	chr21	31538298	31538298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	aggtcttactaagcattgtcGtatttcttcgcttatctgtg	8	8	3	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	21	31538298	31538298	G	A	SNP	CLDN17	ENST00000286808	human	ensembl	69_37n	-1	known	missense	c.638	p.T213M	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282	151	0	0	73	143	66.2	-	-	-	A	31538298	G	A	31538298	3	1	707	1	0	0	0	0	1	0	0	0	3508	1145	40	1	40	1	CLDN17	21	31538298	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09		31538298	16591597	70	61284										
ARHGAP6	0	genome.wustl.edu	37	chrX	11206973	11206973	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	gttttgtcttttatttccaaAtgggaggagggaagccacaa	11	6	1	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	11206973	11206973	A	C	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	missense	c.952	p.F318V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	126	0	0	114	38	25	-	-	-	C	11206973	A	C	11206973	3	2	707	1	0	0	0	0	1	0	0	0	889	101	4	5	2134	5	ARHGAP6	23	11206973	Missense_Mutation	SNP	A	TCGA-D8-A1XJ-01A-11D-A14K-09		11206973	144063587	71	61285										
RPS6KA3	0	genome.wustl.edu	37	chrX	20212321	20212321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	atatacctctttggataagcGtgtaaacaaatctcctcccc	5	12	2	0			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	20212321	20212321	G	A	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	missense	c.472	p.R158C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	31	0	0	160	34	17.53	-	-	-	A	20212321	G	A	20212321	3	1	707	1	0	0	0	0	1	0	0	0	13738	1145	40	1	1818	1	RPS6KA3	23	20212321	Missense_Mutation	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	9005348	20212321	135058239	72	61286										
MAGEB18	0	genome.wustl.edu	37	chrX	26157853	26157853	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	tgaccaaagatttggtgcagCtaaagtacctggagtaccag	11	8	0	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	26157853	26157853	C	T	SNP	MAGEB18	ENST00000325250	human	ensembl	69_37n	1	known	silent	c.751	p.L251	0.406	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774	73	0	0	102	71	41.04	-	-	-	T	26157853	C	T	26157853	2	4	707	1	0	0	0	0	0	0	0	1	9246	796	28	4		4	MAGEB18	23	26157853	Silent	SNP	C	TCGA-D8-A1XJ-01A-11D-A14K-09	5945532	26157853	129112707	73	61287										
DGKK	0	genome.wustl.edu	37	chrX	50146532	50146532	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ggtcatcagtgatagacaatGtattccacttgcagtctttg	9	8	3	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	50146532	50146532	G	A	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	150	0	0	96	69	41.82	-	-	-	A	50146532	G	A	50146532	1	1	707	0	1	0	0	0	0	0	0	0	4508	1377	48	4		4	DGKK	23	50146532	RNA	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	23988679	50146532	105124028	74	61288										
CYSLTR1	0	genome.wustl.edu	37	chrX	77528896	77528896	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	atgcaccggaaaaagctcatGgctgtcataaagaagatgct	10	8	2	2			TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	77528896	77528896	G	T	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	silent	c.348	p.A116	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	37	0	0	73	19	20.65	-	-	-	T	77528896	G	T	77528896	2	4	707	1	0	0	0	0	0	0	0	1	4232	1335	47	4		4	CYSLTR1	23	77528896	Silent	SNP	G	TCGA-D8-A1XJ-01A-11D-A14K-09	27382364	77528896	77741664	75	61289										
BCORL1	0	genome.wustl.edu	37	chrX	129147257	129147259	+	In_Frame_Del	DEL	AGA	AGA	-													0.213333333333333	16	0.0359118270973105	1.90809917355372	1.63977272727273	1.92914438502674	4.06164743350988e-06	0.000305560860767128	8	ctctcggcaaggtgttggagAgaagaatactttcattttgg							TCGA-D8-A1XJ-01A-11D-A14K-09	TCGA-D8-A1XJ-10A-01W-A16I-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a37b27a2-c3b0-4f62-82a2-94e9205b1d6e	bb7de09d-aefe-45f2-8e12-7af57c30cbf4	X	129147257	129147259	AGA	-	DEL	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	in_frame_del	c.509_511	p.K171in_frame_del	0.988:0.981:0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	104	0	0	52	9	14.52	-	-	-	-	129147259	AGA	-	129147257	7	5	707	1	0	1	0	1	0	0	0	0	1391	304	11	0	519	0	BCORL1	23	129147257	In_Frame_Del	DEL	AGA	TCGA-D8-A1XJ-01A-11D-A14K-09	51618361	129147257	26123303	76	61290										
CPSF3L	0	genome.wustl.edu	37	chr1	1256437	1256437	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cattcttgcccgcaatggagAccaggatgcagcttcggccc	11	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	1256437	1256437	A	G	SNP	CPSF3L	ENST00000540437	human	ensembl	69_37n	-1	known	missense	c.83	p.V28A	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054	34	0	0	20	16	43.24	-	-	-	G	1256437	A	G	1256437	3	3	708	1	0	0	0	0	1	0	0	0	3857	275	10	5	1801	5	CPSF3L	1	1256437	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		1256437	247994184	1	61291										
SLC35E2	0	genome.wustl.edu	37	chr1	1670469	1670469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggttttcacacacccgataAccgtggtggacagcatctgc	11	12	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	1670469	1670469	A	C	SNP	SLC35E2	ENST00000246421	human	ensembl	69_37n	-1	known	missense	c.350	p.V117G	0.580	pfam_DMT	pfam_DMT	-	no_errors	SLC35E2	HGNC	ENSG00000215790	227	1	0.43	240	54	18.31	-	-	-	C	1670469	A	C	1670469	3	2	708	1	0	0	0	0	1	0	0	0	14674	43	2	5	1716	5	SLC35E2	1	1670469	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	414032	1670469	247580152	2	61292										
PADI2	0	genome.wustl.edu	37	chr1	17409045	17409045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctcagcatcttaccaggaGctccttcacagggaagtcct	8	15	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	17409045	17409045	G	A	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	missense	c.1153	p.L385F	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	42	0	0	50	14	21.54	-	-	-	A	17409045	G	A	17409045	3	1	708	1	0	0	0	0	1	0	0	0	11451	971	34	4	872	4	PADI2	1	17409045	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	15738576	17409045	231841576	3	61293										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17914103	17914103	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcctgagagggacacagaCcccccactgatccacttgga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	17914103	17914103	C	-	DEL	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	frame_shift_del	c.186	p.P64fs	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	79	0	0	38	21	34.43	-	-	-	-	17914103	C	-	17914103	7	5	708	1	0	1	0	1	0	0	0	0	897	506	18	0	192	0	ARHGEF10L	1	17914103	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	505058	17914103	231336518	4	61294										
PINK1	0	genome.wustl.edu	37	chr1	20964396	20964396	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggacacgagacgcttgcaggGctttcggctggaggagtatc	16	9	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	20964396	20964396	G	T	SNP	PINK1	ENST00000321556	human	ensembl	69_37n	1	known	missense	c.449	p.G150V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PINK1	HGNC	ENSG00000158828	81	0	0	58	34	36.96	-	-	-	T	20964396	G	T	20964396	3	4	708	1	0	0	0	0	1	0	0	0	12006	1203	42	4	455	4	PINK1	1	20964396	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3050293	20964396	228286225	5	61295										
HSPG2	0	genome.wustl.edu	37	chr1	22160416	22160416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggcattgagatctggggcaAggctgagaggcatggaagag	19	5	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	22160416	22160416	A	G	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.10723	p.L3575	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	56	0	0	30	22	41.51	-	-	-	G	22160416	A	G	22160416	2	3	708	1	0	0	0	0	0	0	0	1	7484	69	3	5		5	HSPG2	1	22160416	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1196020	22160416	227090205	6	61296										
EPHB2	0	genome.wustl.edu	37	chr1	23219497	23219497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacgcaccgtggcaggttacGggcgctacagcggcaagatg	15	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	23219497	23219497	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	missense	c.1549	p.G517R	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	45	0	0	29	10	25.64	-	-	-	A	23219497	G	A	23219497	3	1	708	1	0	0	0	0	1	0	0	0	5212	1116	39	1	1575	1	EPHB2	1	23219497	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1059081	23219497	226031124	7	61297										
MYOM3	0	genome.wustl.edu	37	chr1	24393521	24393521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caggacttgccttgcacgtcAgctgcacttggcagtcctcc	10	15	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	24393521	24393521	A	G	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.3422	p.L1141P	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	37	0	0	13	7	35	-	-	-	G	24393521	A	G	24393521	3	3	708	1	0	0	0	0	1	0	0	0	10165	188	7	5	940	5	MYOM3	1	24393521	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1174024	24393521	224857100	8	61298										
PDIK1L	0	genome.wustl.edu	37	chr1	26440821	26440821	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggtgagtagccagccaaagTacgatctaatacgggaggta	13	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	26440821	26440821	T	A	SNP	PDIK1L	ENST00000374269	human	ensembl	69_37n	1	known	missense	c.22	p.Y8N	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PDIK1L	HGNC	ENSG00000175087	75	0	0	69	67	49.26	-	-	-	A	26440821	T	A	26440821	3	1	708	1	0	0	0	0	1	0	0	0	11746	1638	57	5	24	5	PDIK1L	1	26440821	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2047300	26440821	222809800	9	61299										
CD164L2	0	genome.wustl.edu	37	chr1	27706607	27706607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaaagccaccgcctgtaggCtcaacaccagcacgacacct	8	16	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	27706607	27706607	C	T	SNP	CD164L2	ENST00000374030	human	ensembl	69_37n	-1	known	missense	c.452	p.S151N	1.000	pfam_CD164_MGC24	pfam_CD164_MGC24	-	no_errors	CD164L2	HGNC	ENSG00000174950	94	0	0	81	39	32.5	-	-	-	T	27706607	C	T	27706607	3	4	708	1	0	0	0	0	1	0	0	0	2999	797	28	4	73	4	CD164L2	1	27706607	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1265786	27706607	221544014	10	61300										
YARS	0	genome.wustl.edu	37	chr1	33248059	33248059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagttttttcagggcaggggTattaaacttttcccggattg	11	7	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	33248059	33248059	T	C	SNP	YARS	ENST00000373477	human	ensembl	69_37n	-1	known	missense	c.988	p.T330A	0.747	NULL	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,pfscan_tRNA-bd_dom,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS	HGNC	ENSG00000134684	120	1	0.8	114	33	21.57	-	-	-	C	33248059	T	C	33248059	3	2	708	1	0	0	0	0	1	0	0	0	17564	1638	57	5	618	5	YARS	1	33248059	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5541452	33248059	216002562	11	61301										
EIF2C1	0	genome.wustl.edu	37	chr1	36367604	36367604	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaggaatttgggatcaaagTgaaggatgacatgacggagg	15	5	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	36367604	36367604	T	C	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.1196	p.V399A	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	59	0	0	113	34	23.13	-	-	-	C	36367604	T	C	36367604	3	2	708	1	0	0	0	0	1	0	0	0	5040	1696	59	5	1234	5	EIF2C1	1	36367604	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3119545	36367604	212883017	12	61302										
TEKT2	0	genome.wustl.edu	37	chr1	36551436	36551436	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cggccgcgccctcttttctaGatgaaggagtcagcagagca	12	12	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	36551436	36551436	G	C	SNP	TEKT2	ENST00000207457	human	ensembl	69_37n	1	known	splice_site	c.283-1	e3-1	1.000	-	-	-	no_errors	TEKT2	HGNC	ENSG00000092850	45	0	0	43	21	32.81	-	-	-	C	36551436	G	C	36551436	5	2	708	1	0	0	0	0	0	0	1	0	15848	956	33	2	292	2	TEKT2	1	36551436	Splice_Site	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	183832	36551436	212699185	13	61303										
MAP7D1	0	genome.wustl.edu	37	chr1	36636587	36636587	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcagctgtggtcgccaggaCccccccagagccaagacctt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	36636587	36636587	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	69_37n	1	known	frame_shift_del	c.62	p.P23fs	0.700	NULL	pfam_E-MAP-115	-	no_errors	MAP7D1	HGNC	ENSG00000116871	22	0	0	24	12	32.43	-	-	-	-	36636587	C	-	36636587	7	5	708	1	0	1	0	1	0	0	0	0	9338	507	18	0	68	0	MAP7D1	1	36636587	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	85151	36636587	212614034	14	61304										
GNL2	0	genome.wustl.edu	37	chr1	38034680	38034680	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgacacctccacaggaaccAggtcatccccagaaaactga	7	15	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	38034680	38034680	A	G	SNP	GNL2	ENST00000373062	human	ensembl	69_37n	-1	known	missense	c.1640	p.L547P	1.000	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697	145	0	0	172	77	30.92	-	-	-	G	38034680	A	G	38034680	3	3	708	1	0	0	0	0	1	0	0	0	6588	188	7	5	571	5	GNL2	1	38034680	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1398093	38034680	211215941	15	61305										
FHL3	0	genome.wustl.edu	37	chr1	38463128	38463128	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcacttggtctccatccggTacgaagccctggcccaccag	10	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	38463128	38463128	T	C	SNP	FHL3	ENST00000373016	human	ensembl	69_37n	-1	known	silent	c.792	p.V264	0.993	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL3	HGNC	ENSG00000183386	60	0	0	65	24	26.67	-	-	-	C	38463128	T	C	38463128	2	2	708	1	0	0	0	0	0	0	0	1	5926	1625	57	5		5	FHL3	1	38463128	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	428448	38463128	210787493	16	61306										
KIAA0754	0	genome.wustl.edu	37	chr1	39877269	39877269	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggttagagggacttgtttcAgattcagcatgtactgtggg	15	5	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	39877269	39877269	A	T	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	1	known	silent	c.924	p.S308	0.007	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	53	0	0	83	29	25.89	-	-	-	T	39877269	A	T	39877269	2	4	708	1	0	0	0	0	0	0	0	1	8244	175	7	5		5	KIAA0754	1	39877269	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1414141	39877269	209373352	17	61307										
ZMPSTE24	0	genome.wustl.edu	37	chr1	40735712	40735712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actcagtgtattttgttgccTgtgtcttcacttctacttta	6	9	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	40735712	40735712	T	C	SNP	ZMPSTE24	ENST00000372759	human	ensembl	69_37n	1	known	silent	c.540	p.P180	0.999	NULL	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073	190	0	0	251	74	22.7	-	-	-	C	40735712	T	C	40735712	2	2	708	1	0	0	0	0	0	0	0	1	17794	1567	55	5		5	ZMPSTE24	1	40735712	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	858443	40735712	208514909	18	61308										
SMAP2	0	genome.wustl.edu	37	chr1	40881847	40881847	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccccgccctctttgccctaaGgttgtaggttccatgccaac	8	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	40881847	40881847	G	T	SNP	SMAP2	ENST00000372718	human	ensembl	69_37n	1	known	splice_site	c.682-1	e8-1	1.000	-	-	-	no_errors	SMAP2	HGNC	ENSG00000084070	84	0	0	88	21	19.27	-	-	-	T	40881847	G	T	40881847	5	4	708	1	0	0	0	0	0	0	1	0	14856	1014	35	4	711	4	SMAP2	1	40881847	Splice_Site	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	146135	40881847	208368774	19	61309										
KCNQ4	0	genome.wustl.edu	37	chr1	41285020	41285020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctccgcctgccccgcaggAgctgatcaccgcctggtaca	10	19	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	41285020	41285020	A	G	SNP	KCNQ4	ENST00000347132	human	ensembl	69_37n	1	known	missense	c.710	p.E237G	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013	23	0	0	26	10	27.78	-	-	-	G	41285020	A	G	41285020	3	3	708	1	0	0	0	0	1	0	0	0	8139	318	11	5	728	5	KCNQ4	1	41285020	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	403173	41285020	207965601	20	61310										
PTPRF	0	genome.wustl.edu	37	chr1	44058239	44058239	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atatgggggtgggcgtcttcAcccccaccattgaggcccgc	13	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	44058239	44058239	A	G	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.1780	p.T594A	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	27	0	0	31	12	25.53	-	-	-	G	44058239	A	G	44058239	3	3	708	1	0	0	0	0	1	0	0	0	12884	159	6	5	1814	5	PTPRF	1	44058239	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2773219	44058239	205192382	21	61311										
PIK3R3	0	genome.wustl.edu	37	chr1	46521525	46521525	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcaggtttgatgctattcaTttttttatctatttctcggt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	46521525	46521525	T	-	DEL	PIK3R3	ENST00000540385	human	ensembl	69_37n	-1	known	frame_shift_del	c.1021	p.M341fs	1.000	prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461	142	0	0	222	56	20.07	-	-	-	-	46521525	T	-	46521525	7	5	708	1	0	1	0	1	0	0	0	0	11994	1493	52	0	518	0	PIK3R3	1	46521525	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	2463286	46521525	202729096	22	61312										
SLC5A9	0	genome.wustl.edu	37	chr1	48705123	48705123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctgaaggacttccactacCtgtactttgcaatcctcctc	6	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	48705123	48705123	C	A	SNP	SLC5A9	ENST00000236495	human	ensembl	69_37n	1	known	missense	c.1666	p.L556M	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	183	0	0	201	69	25.56	-	-	-	A	48705123	C	A	48705123	3	1	708	1	0	0	0	0	1	0	0	0	14761	680	24	4	1716	4	SLC5A9	1	48705123	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2183598	48705123	200545498	23	61313										
ELAVL4	0	genome.wustl.edu	37	chr1	50572059	50572059	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatgagtcaagaaactgctcAtttatggtaagaggaataca	9	5	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	50572059	50572059	A	G	SNP	ELAVL4	ENST00000357083	human	ensembl	69_37n	1	known	silent	c.54	p.S18	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL4	HGNC	ENSG00000162374	76	0	0	84	35	29.41	-	-	-	G	50572059	A	G	50572059	2	3	708	1	0	0	0	0	0	0	0	1	5089	204	8	5		5	ELAVL4	1	50572059	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1866936	50572059	198678562	24	61314										
EPS15	0	genome.wustl.edu	37	chr1	51866605	51866605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgaccgatttttccaaaagGatcatccttgaaaggatcac	7	10	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	51866605	51866605	G	T	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	missense	c.1903	p.P635T	1.000	NULL	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	57	0	0	80	11	12.09	-	-	-	T	51866605	G	T	51866605	3	4	708	1	0	0	0	0	1	0	0	0	5229	1174	41	2	815	2	EPS15	1	51866605	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1294546	51866605	197384016	25	61315										
EPS15	0	genome.wustl.edu	37	chr1	51869127	51869127	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttattgtcgagttcagaacaAactttttcagtaacagctgt	7	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	51869127	51869127	A	T	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	silent	c.1755	p.V585	1.000	NULL	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	118	0	0	177	50	22.03	-	-	-	T	51869127	A	T	51869127	2	4	708	1	0	0	0	0	0	0	0	1	5229	1	1	5		5	EPS15	1	51869127	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2522	51869127	197381494	26	61316										
PRPF38A	0	genome.wustl.edu	37	chr1	52878256	52878256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctggaagaggacatggatgAtgtggagtccagtgaagagg	17	4	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	52878256	52878256	A	G	SNP	PRPF38A	ENST00000257181	human	ensembl	69_37n	1	known	missense	c.569	p.D190G	0.998	NULL	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748	110	1	0.9	130	56	30.11	-	-	-	G	52878256	A	G	52878256	3	3	708	1	0	0	0	0	1	0	0	0	12648	333	12	5	587	5	PRPF38A	1	52878256	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1009129	52878256	196372365	27	61317										
ALG6	0	genome.wustl.edu	37	chr1	63876980	63876980	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttacttggcaagtgttttAaaaaaggcctcaaaggaaag	9	5	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	63876980	63876980	A	T	SNP	ALG6	ENST00000263440	human	ensembl	69_37n	1	known	nonsense	c.664	p.K222*	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035	96	0	0	138	47	25.41	-	-	-	T	63876980	A	T	63876980	4	4	708	1	0	0	0	0	0	1	0	0	522	363	13	5	684	5	ALG6	1	63876980	Nonsense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	10998724	63876980	185373641	28	61318										
USP33	0	genome.wustl.edu	37	chr1	78181537	78181537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttagattgtttcggcagtaGgctatatagtgtccacctga	10	7	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	78181537	78181537	G	T	SNP	USP33	ENST00000527390	human	ensembl	69_37n	-1	known	missense	c.278	p.P93H	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP33	HGNC	ENSG00000077254	96	0	0	73	39	34.82	-	-	-	T	78181537	G	T	78181537	3	4	708	1	0	0	0	0	1	0	0	0	17161	987	35	4	840	4	USP33	1	78181537	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	14304557	78181537	171069084	29	61319										
BCL10	0	genome.wustl.edu	37	chr1	85733330	85733330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcattgtcgtgaaacagtacGtgatcttaagggaagaaaca	10	6	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	85733330	85733330	G	A	SNP	BCL10	ENST00000271015	human	ensembl	69_37n	-1	known	missense	c.682	p.R228C	1.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867	48	0	0	67	21	23.6	-	-	-	A	85733330	G	A	85733330	3	1	708	1	0	0	0	0	1	0	0	0	1366	1145	40	1	23	1	BCL10	1	85733330	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	7551793	85733330	163517291	30	61320										
HS2ST1	0	genome.wustl.edu	37	chr1	87538857	87538857	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgtcattgcaagatcaggTaattaccacttaaggaatgc	9	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	87538857	87538857	T	C	SNP	HS2ST1	ENST00000370550	human	ensembl	69_37n	1	known	splice_site	c.363+2	e2+2	1.000	-	-	-	no_errors	HS2ST1	HGNC	ENSG00000153936	44	0	0	50	22	30.56	-	-	-	C	87538857	T	C	87538857	5	2	708	1	0	0	0	0	0	0	1	0	7413	1652	57	5	371	5	HS2ST1	1	87538857	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1805527	87538857	161711764	31	61321										
DNTTIP2	0	genome.wustl.edu	37	chr1	94342893	94342893	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catactcctggttcttctagTtgcaattccagagaatgaaa	7	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	94342893	94342893	T	C	SNP	DNTTIP2	ENST00000436063	human	ensembl	69_37n	-1	known	missense	c.598	p.T200A	0.000	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	97	0	0	99	49	33.11	-	-	-	C	94342893	T	C	94342893	3	2	708	1	0	0	0	0	1	0	0	0	4717	1725	60	5	1696	5	DNTTIP2	1	94342893	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6804036	94342893	154907728	32	61322										
FNDC7	0	genome.wustl.edu	37	chr1	109276138	109276138	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgaagcttactttctgtccAaaaaaaatatattcaggtaa							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	109276138	109276138	A	-	DEL	FNDC7	ENST00000271311	human	ensembl	69_37n	1	known	frame_shift_del	c.2127	p.I712fs	0.757	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107	40	0	0	65	16	19.75	-	-	-	-	109276138	A	-	109276138	7	5	708	1	0	1	0	1	0	0	0	0	6019	117	5	0	2162	0	FNDC7	1	109276138	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	14933245	109276138	139974483	33	61323										
GPSM2	0	genome.wustl.edu	37	chr1	109466838	109466838	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catccttgtaaaatgtcaagTatgtctgtatatttttttcg	6	6	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	109466838	109466838	T	C	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	splice_site	c.1815+2	e13+2	1.000	-	-	-	no_errors	GPSM2	HGNC	ENSG00000121957	57	0	0	79	27	25.47	-	-	-	C	109466838	T	C	109466838	5	2	708	1	0	0	0	0	0	0	1	0	6786	1652	57	5	1867	5	GPSM2	1	109466838	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	190700	109466838	139783783	34	61324										
SARS	0	genome.wustl.edu	37	chr1	109779110	109779110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtctcctgttctaattgcacGgattaccaggctcgccggct	10	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	109779110	109779110	G	A	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	silent	c.1197	p.T399	0.818	pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	71	0	0	75	29	27.62	-	-	-	A	109779110	G	A	109779110	2	1	708	1	0	0	0	0	0	0	0	1	13931	1103	39	1		1	SARS	1	109779110	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	312272	109779110	139471511	35	61325										
SARS	0	genome.wustl.edu	37	chr1	109780392	109780392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttgtgaagcctgcgcccaTtgagcaggagccatcaaaga	11	11	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	109780392	109780392	T	A	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	missense	c.1493	p.I498N	1.000	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	93	0	0	109	31	22.14	-	-	-	A	109780392	T	A	109780392	3	1	708	1	0	0	0	0	1	0	0	0	13931	1493	52	5	1469	5	SARS	1	109780392	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1282	109780392	139470229	36	61326										
PPIAL4G	0	genome.wustl.edu	37	chr1	143767699	143767699	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataattctgtgaaagcaggaAcccttataacgaaatccttt	6	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	143767699	143767699	A	G	SNP	PPIAL4G	ENST00000419275	human	ensembl	69_37n	-1	known	silent	c.150	p.G50	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334	198	0	0	347	68	16.31	-	-	-	G	143767699	A	G	143767699	2	3	708	1	0	0	0	0	0	0	0	1	12395	30	2	5		5	PPIAL4G	1	143767699	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	33987307	143767699	105482922	37	61327										
GPR89A	0	genome.wustl.edu	37	chr1	145769496	145769496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtgttgggaccaaaacttcAcctgccaccataacaagaaa	7	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	145769496	145769496	A	G	SNP	GPR89A	ENST00000313835	human	ensembl	69_37n	-1	known	missense	c.1007	p.V336A	1.000	pfam_ABA_GPCR_dom	pfam_ABA_GPCR_dom,pfam_Golgi_pH-regulator_cons_dom	-	no_errors	GPR89A	HGNC	ENSG00000117262	253	0	0	254	67	15.51	-	-	-	G	145769496	A	G	145769496	3	3	708	1	0	0	0	0	1	0	0	0	6768	173	6	5	372	5	GPR89A	1	145769496	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2001797	145769496	103481125	38	61328										
OTUD7B	0	genome.wustl.edu	37	chr1	149943110	149943110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctcactaaaggatgggggtAggtttccagcatggacttga	13	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	149943110	149943110	A	G	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.155	p.L52P	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	82	0	0	112	36	24.32	-	-	-	G	149943110	A	G	149943110	3	3	708	1	0	0	0	0	1	0	0	0	11392	420	15	5	2416	5	OTUD7B	1	149943110	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4173614	149943110	99307511	39	61329										
CA14	0	genome.wustl.edu	37	chr1	150234561	150234561	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcttttcctcacagtgcaActctctctgccctctaccct	4	18	5	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	150234561	150234561	A	G	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	silent	c.261	p.Q87	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	37	0	0	59	16	20.78	-	-	-	G	150234561	A	G	150234561	2	3	708	1	0	0	0	0	0	0	0	1	2540	40	2	5		5	CA14	1	150234561	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	291451	150234561	99016060	40	61330										
PRPF3	0	genome.wustl.edu	37	chr1	150310652	150310652	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttaggctcaactggagaagcTacaggcagagatttcacaag	11	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	150310652	150310652	T	A	SNP	PRPF3	ENST00000324862	human	ensembl	69_37n	1	known	missense	c.1052	p.L351Q	1.000	pfam_Pre-mRNA_splic_Prp3	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI	-	no_errors	PRPF3	HGNC	ENSG00000117360	59	0	0	102	17	14.29	-	-	-	A	150310652	T	A	150310652	3	1	708	1	0	0	0	0	1	0	0	0	12646	1522	53	5	1078	5	PRPF3	1	150310652	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	76091	150310652	98939969	41	61331										
ZNF687	0	genome.wustl.edu	37	chr1	151262327	151262328	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagtacccagctcccctgagINScccccccgtccagccaaacg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	151262327	151262328	-	C	INS	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	frame_shift_ins	c.2808_2809	p.R938fs	0.998:0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	38	0	0	41	7	14.58	-	-	-	C	151262328	-	C	151262327	7	5	708	1	0	1	1	0	0	0	0	0	18188	962	34	0	2826	0	ZNF687	1	151262327	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	951675	151262327	97988294	42	61332										
S100A10	0	genome.wustl.edu	37	chr1	151958689	151958689	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcatggtttccatggcgtgTtccatttgagatggcatttt	10	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	151958689	151958689	T	C	SNP	S100A10	ENST00000368809	human	ensembl	69_37n	-1	known	silent	c.18	p.E6	0.261	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub	-	no_errors	S100A10	HGNC	ENSG00000197747	133	0	0	162	31	16.06	-	-	-	C	151958689	T	C	151958689	2	2	708	1	0	0	0	0	0	0	0	1	13858	1722	60	5		5	S100A10	1	151958689	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	696362	151958689	97291932	43	61333										
KPRP	0	genome.wustl.edu	37	chr1	152733330	152733330	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctagaaccacgcccgcgtccTctaccacgacaactttcaga	6	17	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	152733330	152733330	T	C	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	silent	c.1266	p.P422	0.004	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	139	0	0	152	45	22.84	-	-	-	C	152733330	T	C	152733330	2	2	708	1	0	0	0	0	0	0	0	1	8489	1538	54	5		5	KPRP	1	152733330	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	774641	152733330	96517291	44	61334										
SMCP	0	genome.wustl.edu	37	chr1	152857068	152857068	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgcccaccaaaacacaatcActgctgccagccaaaacccc	4	19	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	152857068	152857068	A	G	SNP	SMCP	ENST00000368765	human	ensembl	69_37n	1	known	missense	c.170	p.H57R	0.000	NULL	NULL	-	no_errors	SMCP	HGNC	ENSG00000163206	88	0	0	141	23	13.94	-	-	-	G	152857068	A	G	152857068	3	3	708	1	0	0	0	0	1	0	0	0	14878	159	6	5	172	5	SMCP	1	152857068	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	123738	152857068	96393553	45	61335										
DENND4B	0	genome.wustl.edu	37	chr1	153914686	153914686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcaccagctgcacccgtgaGcacaaaggtggagaagacgg	13	11	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	153914686	153914686	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.787	p.L263F	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	56	0	0	59	17	22.37	-	-	-	A	153914686	G	A	153914686	3	1	708	1	0	0	0	0	1	0	0	0	4470	971	34	4	3799	4	DENND4B	1	153914686	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1057618	153914686	95335935	46	61336										
RAB13	0	genome.wustl.edu	37	chr1	153956014	153956014	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taccatggctccacggtagtAggcagtagttattgtcttga	11	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	153956014	153956014	A	G	SNP	RAB13	ENST00000368575	human	ensembl	69_37n	-1	known	missense	c.229	p.Y77H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545	119	0	0	178	31	14.83	-	-	-	G	153956014	A	G	153956014	3	3	708	1	0	0	0	0	1	0	0	0	12982	420	15	5	406	5	RAB13	1	153956014	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	41328	153956014	95294607	47	61337										
UBE2Q1	0	genome.wustl.edu	37	chr1	154528431	154528431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagatggggggcacagcagGgtatgactcctgaagggaaa	16	8	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	154528431	154528431	G	T	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	missense	c.337	p.P113T	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	49	0	0	107	32	23.02	-	-	-	T	154528431	G	T	154528431	3	4	708	1	0	0	0	0	1	0	0	0	16966	1232	43	4	979	4	UBE2Q1	1	154528431	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	572417	154528431	94722190	48	61338										
PBXIP1	0	genome.wustl.edu	37	chr1	154919038	154919038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttctggctcctgctccctgGggccttgctccctgatggcc	12	16	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	154919038	154919038	G	T	SNP	PBXIP1	ENST00000368463	human	ensembl	69_37n	-1	known	missense	c.1112	p.P371H	0.003	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346	49	0	0	58	7	10.77	-	-	-	T	154919038	G	T	154919038	3	4	708	1	0	0	0	0	1	0	0	0	11569	1232	43	4	1091	4	PBXIP1	1	154919038	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	390607	154919038	94331583	49	61339										
DCST2	0	genome.wustl.edu	37	chr1	154999032	154999032	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtagttgataccaatgactAtgtagccagtgctgtcaggc	11	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	154999032	154999032	A	T	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	missense	c.1502	p.I501K	0.001	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	31	0	0	31	11	26.19	-	-	-	T	154999032	A	T	154999032	3	4	708	1	0	0	0	0	1	0	0	0	4334	449	16	5	847	5	DCST2	1	154999032	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	79994	154999032	94251589	50	61340										
CLK2	0	genome.wustl.edu	37	chr1	155236644	155236644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agctcaaaggagatacacatGtggccatggtagtcaaacca	10	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	155236644	155236644	G	T	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.714	p.H238Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	108	0	0	177	47	20.98	-	-	-	T	155236644	G	T	155236644	3	4	708	1	0	0	0	0	1	0	0	0	3567	1368	48	4	813	4	CLK2	1	155236644	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	237612	155236644	94013977	51	61341										
RUSC1	0	genome.wustl.edu	37	chr1	155294982	155294982	+	RNA	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcagaaggtgaaggtggctGgggggaggctgttgggatga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	155294982	155294982	G	-	DEL	RUSC1	ENST00000462780	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RUSC1	HGNC	ENSG00000160753	40	0	0	50	17	24.64	-	-	-	-	155294982	G	-	155294982	6	5	708	0	1	1	0	1	0	0	0	0	13836	1363	47	0		0	RUSC1	1	155294982	RNA	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	58338	155294982	93955639	52	61342										
YY1AP1	0	genome.wustl.edu	37	chr1	155631112	155631112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgtacctttaaccagaatgGgagccggtgttcttctctct	9	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	155631112	155631112	G	A	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.1396	p.P466S	0.996	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	166	0	0	201	57	22.09	-	-	-	A	155631112	G	A	155631112	3	1	708	1	0	0	0	0	1	0	0	0	17605	1232	43	4	1278	4	YY1AP1	1	155631112	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	336130	155631112	93619509	53	61343										
RHBG	0	genome.wustl.edu	37	chr1	156354347	156354348	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaagctaccctttctggactINSccccccccagactcccagca							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	156354347	156354348	-	C	INS	RHBG	ENST00000400992	human	ensembl	69_37n	1	known	frame_shift_ins	c.1168_1169	p.R393fs	0.006:0.723	superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	67	0	0	108	14	11.48	-	-	-	C	156354348	-	C	156354347	7	5	708	1	0	1	1	0	0	0	0	0	13408	1551	54	0	1298	0	RHBG	1	156354347	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	723235	156354347	92896274	54	61344										
IQGAP3	0	genome.wustl.edu	37	chr1	156498340	156498340	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caatttccaccaagacacccTtttccaggagctgagcagca							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	156498340	156498340	T	-	DEL	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	frame_shift_del	c.4634	p.K1545fs	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	43	0	0	72	13	14.94	-	-	-	-	156498340	T	-	156498340	7	5	708	1	0	1	0	1	0	0	0	0	7870	1609	56	0	273	0	IQGAP3	1	156498340	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	143993	156498340	92752281	55	61345										
NES	0	genome.wustl.edu	37	chr1	156639821	156639821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacctggcccagaggttctgCcacctccccagggaccccag	10	19	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	156639821	156639821	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.4159	p.A1387T	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	23	0	0	19	6	24	-	-	-	T	156639821	C	T	156639821	3	4	708	1	0	0	0	0	1	0	0	0	10409	739	26	4	710	4	NES	1	156639821	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	141481	156639821	92610800	56	61346										
ARHGEF11	0	genome.wustl.edu	37	chr1	156910105	156910105	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgttctctccatccagggaTgtggaagggcaaggcaggac	14	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	156910105	156910105	T	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.3627	p.T1209	0.027	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	91	0	0	120	20	14.29	-	-	-	C	156910105	T	C	156910105	2	2	708	1	0	0	0	0	0	0	0	1	898	1451	51	5		5	ARHGEF11	1	156910105	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	270284	156910105	92340516	57	61347										
SPTA1	0	genome.wustl.edu	37	chr1	158639290	158639290	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagtttttgcagaagcaatgActccttcagcaatctacgtc	7	11	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	158639290	158639290	A	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1741	p.S581T	1.000	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	129	0	0	190	46	19.25	-	-	-	T	158639290	A	T	158639290	3	4	708	1	0	0	0	0	1	0	0	0	15207	275	10	5	5674	5	SPTA1	1	158639290	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1729185	158639290	90611331	58	61348										
IFI16	0	genome.wustl.edu	37	chr1	158990208	158990208	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgtagtggggacaggacaAtgtcacaatatcccctgtga	12	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	158990208	158990208	A	G	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	silent	c.1050	p.Q350	0.001	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	76	0	0	72	25	25.77	-	-	-	G	158990208	A	G	158990208	2	3	708	1	0	0	0	0	0	0	0	1	7565	98	4	5		5	IFI16	1	158990208	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	350918	158990208	90260413	59	61349										
IGSF9	0	genome.wustl.edu	37	chr1	159904032	159904032	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccagctgacaaagagcagtGgggggttggcacgaaccggg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	159904032	159904032	G	-	DEL	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	frame_shift_del	c.1052	p.P351fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	30	0	0	65	11	14.29	-	-	-	-	159904032	G	-	159904032	7	5	708	1	0	1	0	1	0	0	0	0	7659	1348	47	0	2539	0	IGSF9	1	159904032	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	913824	159904032	89346589	60	61350										
KCNJ9	0	genome.wustl.edu	37	chr1	160054403	160054403	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcatgttccgcgtgggcgacTtgcgctcctcacacatagtg	11	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	160054403	160054403	T	A	SNP	KCNJ9	ENST00000368088	human	ensembl	69_37n	1	known	missense	c.583	p.L195M	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.3	-	no_errors	KCNJ9	HGNC	ENSG00000162728	23	0	0	16	4	20	-	-	-	A	160054403	T	A	160054403	3	1	708	1	0	0	0	0	1	0	0	0	8111	1606	56	5	585	5	KCNJ9	1	160054403	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	150371	160054403	89196218	61	61351										
CASQ1	0	genome.wustl.edu	37	chr1	160168503	160168503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaatccacattgtggccttcGcagaggaagctgatcctggt	12	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	160168503	160168503	G	A	SNP	CASQ1	ENST00000368078	human	ensembl	69_37n	1	known	missense	c.865	p.A289T	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318	105	0	0	130	18	12.16	-	-	-	A	160168503	G	A	160168503	3	1	708	1	0	0	0	0	1	0	0	0	2705	1087	38	1	895	1	CASQ1	1	160168503	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	114100	160168503	89082118	62	61352										
PPOX	0	genome.wustl.edu	37	chr1	161137815	161137815	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgcccttcaccccccttctcCaaacctctgttttgggctgg	7	18	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	161137815	161137815	C	A	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	1	known	silent	c.369	p.S123	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	51	0	0	47	12	20.34	-	-	-	A	161137815	C	A	161137815	2	1	708	1	0	0	0	0	0	0	0	1	12425	581	21	4		4	PPOX	1	161137815	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	969312	161137815	88112806	63	61353										
TMCO1	0	genome.wustl.edu	37	chr1	165721405	165721405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaacatggatttcattcgaAcctgtaatgagacgaacaaa	7	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	165721405	165721405	A	G	SNP	TMCO1	ENST00000367881	human	ensembl	69_37n	-1	known	missense	c.410	p.V137A	1.000	pfam_DUF106_TM	pfam_DUF106_TM	-	no_errors	TMCO1	HGNC	ENSG00000143183	63	0	0	106	17	13.82	-	-	-	G	165721405	A	G	165721405	3	3	708	1	0	0	0	0	1	0	0	0	16090	57	2	5	321	5	TMCO1	1	165721405	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4583590	165721405	83529216	64	61354										
UCK2	0	genome.wustl.edu	37	chr1	165875172	165875172	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccacagacaaagaagtatgcTgatgtgatcatccctagagg	10	9	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	165875172	165875172	T	C	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.612	p.A204	0.461	pfam_PRK/URK,prints_Uridine_kinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	118	0	0	116	40	25.48	-	-	-	C	165875172	T	C	165875172	2	2	708	1	0	0	0	0	0	0	0	1	17021	1567	55	5		5	UCK2	1	165875172	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	153767	165875172	83375449	65	61355										
ANKRD45	0	genome.wustl.edu	37	chr1	173593947	173593947	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggtgtagtcatttttgtgaAgataggagtcacaatatctt	10	4	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	173593947	173593947	A	G	SNP	ANKRD45	ENST00000333279	human	ensembl	69_37n	-1	known	missense	c.709	p.F237L	0.079	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD45	HGNC	ENSG00000183831	174	0	0	194	71	26.69	-	-	-	G	173593947	A	G	173593947	3	3	708	1	0	0	0	0	1	0	0	0	672	72	3	5	99	5	ANKRD45	1	173593947	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7718775	173593947	75656674	66	61356										
RC3H1	0	genome.wustl.edu	37	chr1	173962098	173962098	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgggcaggagaggaaatccGtccattgtggagcttgtaca	14	7	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	173962098	173962098	G	T	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.26	p.T9K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	88	0	0	151	33	17.84	-	-	-	T	173962098	G	T	173962098	3	4	708	1	0	0	0	0	1	0	0	0	13249	1145	40	3	3451	3	RC3H1	1	173962098	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	368151	173962098	75288523	67	61357										
RABGAP1L	0	genome.wustl.edu	37	chr1	174219767	174219767	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacgatggaaaaggaaactTtaggtgaggcatttggaaag	14	3	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	174219767	174219767	T	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	69_37n	1	known	missense	c.872	p.F291S	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	90	0	0	109	44	28.76	-	-	-	C	174219767	T	C	174219767	3	2	708	1	0	0	0	0	1	0	0	0	13048	1841	64	5	890	5	RABGAP1L	1	174219767	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	257669	174219767	75030854	68	61358										
SEC16B	0	genome.wustl.edu	37	chr1	177898979	177898979	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcctgggagatgagcctgggAcgtgtgtttattctcagcat	13	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	177898979	177898979	A	G	SNP	SEC16B	ENST00000327037	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	107	0	0	145	40	21.62	-	-	-	G	177898979	A	G	177898979	1	3	708	0	1	0	0	0	0	0	0	0	14075	290	10	5		5	SEC16B	1	177898979	RNA	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3679212	177898979	71351642	69	61359										
TDRD5	0	genome.wustl.edu	37	chr1	179587762	179587762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacattcaaatcagttattgCacagattggacctggaggaa	9	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	179587762	179587762	C	T	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	missense	c.860	p.A287V	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	59	0	0	100	15	12.93	-	-	-	T	179587762	C	T	179587762	3	4	708	1	0	0	0	0	1	0	0	0	15828	710	25	4	874	4	TDRD5	1	179587762	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1688783	179587762	69662859	70	61360										
CEP350	0	genome.wustl.edu	37	chr1	179985072	179985072	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcatcttccagtagtgacaTgtctctctcagaacctccac	6	14	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	179985072	179985072	T	A	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.2141	p.M714K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	51	0	0	73	15	17.05	-	-	-	A	179985072	T	A	179985072	3	1	708	1	0	0	0	0	1	0	0	0	3283	1464	51	5	2179	5	CEP350	1	179985072	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	397310	179985072	69265549	71	61361										
KIAA1614	0	genome.wustl.edu	37	chr1	180905640	180905640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccatcacagacccagcccagCcgccctcaggtcaggcaccc	8	21	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	180905640	180905640	C	T	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	silent	c.2595	p.S865	0.004	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	46	0	0	37	11	22.92	-	-	-	T	180905640	C	T	180905640	2	4	708	1	0	0	0	0	0	0	0	1	8300	738	26	4		4	KIAA1614	1	180905640	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	920568	180905640	68344981	72	61362										
HMCN1	0	genome.wustl.edu	37	chr1	185947023	185947023	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atccagaaccaacaatcaaaTggcgaagattagacaacatg	7	9	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	185947023	185947023	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.2476	p.W826R	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	151	0	0	229	27	10.55	-	-	-	C	185947023	T	C	185947023	3	2	708	1	0	0	0	0	1	0	0	0	7271	1464	51	5	2538	5	HMCN1	1	185947023	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5041383	185947023	63303598	73	61363										
TPR	0	genome.wustl.edu	37	chr1	186314830	186314830	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttcttcaattcagataacTaagcagaaagaacaagatta	5	6	3	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	186314830	186314830	T	C	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	splice_site	c.3097-2	e24-2	0.998	-	-	-	no_errors	TPR	HGNC	ENSG00000047410	75	0	0	101	32	24.06	-	-	-	C	186314830	T	C	186314830	5	2	708	1	0	0	0	0	0	0	1	0	16512	1536	53	5	4108	5	TPR	1	186314830	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	367807	186314830	62935791	74	61364										
KIF14	0	genome.wustl.edu	37	chr1	200584711	200584711	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttcccactcatgaagactAcctgggatgctttttcaatc	6	12	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	200584711	200584711	A	G	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.1139	p.V380A	0.998	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	44	0	0	91	19	17.27	-	-	-	G	200584711	A	G	200584711	3	3	708	1	0	0	0	0	1	0	0	0	8328	391	14	5	3919	5	KIF14	1	200584711	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	14269881	200584711	48665910	75	61365										
LGR6	0	genome.wustl.edu	37	chr1	202287366	202287366	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggctaggctgccgggccacTggcttcctggcagtacttgg	16	12	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	202287366	202287366	T	C	SNP	LGR6	ENST00000367278	human	ensembl	69_37n	1	known	silent	c.1935	p.T645	0.001	pfam_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	38	0	0	28	10	26.32	-	-	-	C	202287366	T	C	202287366	2	2	708	1	0	0	0	0	0	0	0	1	8813	1567	55	5		5	LGR6	1	202287366	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1702655	202287366	46963255	76	61366										
PPP1R12B	0	genome.wustl.edu	37	chr1	202398059	202398059	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagaagaagcagaatgtggTgagtttctgattggtgcttt	13	5	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	202398059	202398059	T	C	SNP	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	splice_site	c.921+2	e6+2	1.000	-	-	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	122	0	0	154	33	17.46	-	-	-	C	202398059	T	C	202398059	5	2	708	1	0	0	0	0	0	0	1	0	12432	1710	59	5	945	5	PPP1R12B	1	202398059	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	110693	202398059	46852562	77	61367										
ATP2B4	0	genome.wustl.edu	37	chr1	203690370	203690370	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgttgtgggttaatctgatcAtggacacttttgcttcattg	10	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	203690370	203690370	A	G	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.2644	p.M882V	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	77	0	0	148	22	12.94	-	-	-	G	203690370	A	G	203690370	3	3	708	1	0	0	0	0	1	0	0	0	1146	217	8	5	2706	5	ATP2B4	1	203690370	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1292311	203690370	45560251	78	61368										
ZC3H11A	0	genome.wustl.edu	37	chr1	203786220	203786220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcctaatcaaggagaagacTgctatttttttttctattcc	6	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	203786220	203786220	T	C	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	1	known	missense	c.22	p.C8R	1.000	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	75	0	0	123	42	25.45	-	-	-	C	203786220	T	C	203786220	3	2	708	1	0	0	0	0	1	0	0	0	17656	1580	55	5	24	5	ZC3H11A	1	203786220	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	95850	203786220	45464401	79	61369										
KISS1	0	genome.wustl.edu	37	chr1	204161941	204161941	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacagaggccaccttttctaAtggctccccaaagtgggtgg	11	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	204161941	204161941	A	T	SNP	KISS1	ENST00000367194	human	ensembl	69_37n	-1	known	missense	c.64	p.L22I	0.000	NULL	NULL	-	no_errors	KISS1	HGNC	ENSG00000170498	56	0	0	99	19	16.1	-	-	-	T	204161941	A	T	204161941	3	4	708	1	0	0	0	0	1	0	0	0	8380	98	4	5	360	5	KISS1	1	204161941	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	375721	204161941	45088680	80	61370										
DSTYK	0	genome.wustl.edu	37	chr1	205126412	205126412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttacttaccagcacattttTcagtttgatatcacgatgga	6	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	205126412	205126412	T	C	SNP	DSTYK	ENST00000367162	human	ensembl	69_37n	-1	known	missense	c.2341	p.K781E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059	76	0	0	119	23	16.2	-	-	-	C	205126412	T	C	205126412	3	2	708	1	0	0	0	0	1	0	0	0	4820	1792	62	5	464	5	DSTYK	1	205126412	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	964471	205126412	44124209	81	61371										
CDK18	0	genome.wustl.edu	37	chr1	205499815	205499815	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggacccaggctaccgaggcTtggccttccagcagccaggt	13	14	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	205499815	205499815	T	C	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	silent	c.1462	p.L488	0.978	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	45	0	0	66	20	23.26	-	-	-	C	205499815	T	C	205499815	2	2	708	1	0	0	0	0	0	0	0	1	3163	1606	56	5		5	CDK18	1	205499815	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	373403	205499815	43750806	82	61372										
PFKFB2	0	genome.wustl.edu	37	chr1	207241610	207241610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacagactgctgaatctctcGgggtgccctatgagcagtgg	13	10	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	207241610	207241610	G	T	SNP	PFKFB2	ENST00000367080	human	ensembl	69_37n	1	known	missense	c.943	p.G315W	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB2	HGNC	ENSG00000123836	65	0	0	79	22	21.78	-	-	-	T	207241610	G	T	207241610	3	4	708	1	0	0	0	0	1	0	0	0	11835	1116	39	3	977	3	PFKFB2	1	207241610	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1741795	207241610	42009011	83	61373										
IARS2	0	genome.wustl.edu	37	chr1	220300110	220300110	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggttggtggccctgatgccTtggaatatgtgccaggtcag	15	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	220300110	220300110	T	C	SNP	IARS2	ENST00000302637	human	ensembl	69_37n	1	known	silent	c.1762	p.L588	0.142	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS2	HGNC	ENSG00000067704	161	0	0	155	61	28.24	-	-	-	C	220300110	T	C	220300110	2	2	708	1	0	0	0	0	0	0	0	1	7528	1606	56	5		5	IARS2	1	220300110	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	13058500	220300110	28950511	84	61374										
MIA3	0	genome.wustl.edu	37	chr1	222825650	222825650	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgggttcaagaagaaaatgcTaggcttaagaagaaaaaaga	11	4	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	222825650	222825650	T	A	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	silent	c.4062	p.A1354	0.035	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	100	0	0	102	47	31.54	-	-	-	A	222825650	T	A	222825650	2	1	708	1	0	0	0	0	0	0	0	1	9636	1509	53	5		5	MIA3	1	222825650	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2525540	222825650	26424971	85	61375										
LBR	0	genome.wustl.edu	37	chr1	225605767	225605767	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatactctggtttcccataaCtcatacaaagctggcaaagg	7	10	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	225605767	225605767	C	G	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.756	p.E252D	0.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	59	0	0	119	33	21.71	-	-	-	G	225605767	C	G	225605767	3	3	708	1	0	0	0	0	1	0	0	0	8706	564	20	4	1127	4	LBR	1	225605767	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2780117	225605767	23644854	86	61376										
ENAH	0	genome.wustl.edu	37	chr1	225700686	225700686	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcggagttcacaccaatagcAttccctccacttgggaaaga	9	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	225700686	225700686	A	G	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	silent	c.1251	p.N417	0.008	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	91	0	0	94	49	34.27	-	-	-	G	225700686	A	G	225700686	2	3	708	1	0	0	0	0	0	0	0	1	5148	214	8	5		5	ENAH	1	225700686	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	94919	225700686	23549935	87	61377										
NUP133	0	genome.wustl.edu	37	chr1	229631263	229631263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agttttgcttcaagtccaaaTatcgaatgttgactccttct	6	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	229631263	229631263	T	C	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	missense	c.1025	p.Y342C	0.997	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	212	0	0	308	86	21.77	-	-	-	C	229631263	T	C	229631263	3	2	708	1	0	0	0	0	1	0	0	0	10827	1406	49	5	2521	5	NUP133	1	229631263	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3930577	229631263	19619358	88	61378										
KIAA1383	0	genome.wustl.edu	37	chr1	232942880	232942880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaactgcctgaagataagtAtttagattcagatgcatctt	7	7	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	232942880	232942880	A	G	SNP	KIAA1383	ENST00000418460	human	ensembl	69_37n	1	known	missense	c.2111	p.Y704C	0.000	NULL	NULL	-	no_errors	KIAA1383	HGNC	ENSG00000212916	38	0	0	36	17	32.08	-	-	-	G	232942880	A	G	232942880	3	3	708	1	0	0	0	0	1	0	0	0	8280	449	16	5	2113	5	KIAA1383	1	232942880	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3311617	232942880	16307741	89	61379										
LYST	0	genome.wustl.edu	37	chr1	235904748	235904748	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggatgggctgagacagtctcGtagtatttcctgatgatttg	13	6	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	235904748	235904748	G	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.8332	p.R2778G	0.753	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	127	0	0	194	46	19.17	-	-	-	C	235904748	G	C	235904748	3	2	708	1	0	0	0	0	1	0	0	0	9195	1153	40	3	3165	3	LYST	1	235904748	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2961868	235904748	13345873	90	61380										
HEATR1	0	genome.wustl.edu	37	chr1	236714266	236714266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgaatagtcttttggcacTgatgttctacttcttcacat	7	9	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	236714266	236714266	T	C	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.6371	p.Q2124R	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	81	0	0	162	29	15.18	-	-	-	C	236714266	T	C	236714266	3	2	708	1	0	0	0	0	1	0	0	0	7078	1580	55	5	67	5	HEATR1	1	236714266	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	809518	236714266	12536355	91	61381										
RYR2	0	genome.wustl.edu	37	chr1	237780728	237780728	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtcatgcaagccttaaacaTgtcagctgcactcacagcca	7	13	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	237780728	237780728	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5852	p.M1951T	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	49	0	0	75	12	13.79	-	-	-	C	237780728	T	C	237780728	3	2	708	1	0	0	0	0	1	0	0	0	13855	1464	51	5	6008	5	RYR2	1	237780728	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1066462	237780728	11469893	92	61382										
RYR2	0	genome.wustl.edu	37	chr1	237893593	237893593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatctctttcttcagggataTgaaaagtcttggattgaaac	8	6	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	237893593	237893593	T	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.10866	p.Y3622	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	86	0	0	132	20	13.16	-	-	-	C	237893593	T	C	237893593	2	2	708	1	0	0	0	0	0	0	0	1	13855	1471	51	5		5	RYR2	1	237893593	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	112865	237893593	11357028	93	61383										
KIF26B	0	genome.wustl.edu	37	chr1	245583020	245583020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagcgagacttccacaggcaCatcggtggccgcctccttct	10	16	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	245583020	245583020	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.1139	p.T380I	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	48	0	0	60	26	30.23	-	-	-	T	245583020	C	T	245583020	3	4	708	1	0	0	0	0	1	0	0	0	8347	478	17	4	1153	4	KIF26B	1	245583020	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	7689427	245583020	3667601	94	61384										
CNST	0	genome.wustl.edu	37	chr1	246755180	246755180	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggccttcttgggaaaggacAaaaaaattcctggaaaaaga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	246755180	246755180	A	-	DEL	CNST	ENST00000366513	human	ensembl	69_37n	1	known	frame_shift_del	c.316	p.I108fs	0.913	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	29	0	0	52	9	14.75	-	-	-	-	246755180	A	-	246755180	7	5	708	1	0	1	0	1	0	0	0	0	3664	131	5	0	318	0	CNST	1	246755180	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	1172160	246755180	2495441	95	61385										
AHCTF1	0	genome.wustl.edu	37	chr1	247012977	247012977	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggctcattgtttggttcagAaaggtccggcaacaagatgg	13	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	247012977	247012977	A	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.6358	p.S2120T	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	193	0	0	302	97	24.31	-	-	-	T	247012977	A	T	247012977	3	4	708	1	0	0	0	0	1	0	0	0	408	246	9	5	485	5	AHCTF1	1	247012977	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	257797	247012977	2237644	96	61386										
AHCTF1	0	genome.wustl.edu	37	chr1	247030635	247030635	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcgaatacactataggagaTggttcttctattttagaact	8	6	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	247030635	247030635	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.3285	p.P1095	0.563	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	29	0	0	65	9	12.16	-	-	-	C	247030635	T	C	247030635	2	2	708	1	0	0	0	0	0	0	0	1	408	1451	51	5		5	AHCTF1	1	247030635	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	17658	247030635	2219986	97	61387										
ZNF692	0	genome.wustl.edu	37	chr1	249151665	249151665	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgagacaagagcaccagataCtgcagaccttttggaggcaa	11	9	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	1	249151665	249151665	C	A	SNP	ZNF692	ENST00000451251	human	ensembl	69_37n	-1	known	missense	c.258	p.Q86H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163	26	0	0	37	7	15.91	-	-	-	A	249151665	C	A	249151665	3	1	708	1	0	0	0	0	1	0	0	0	18193	564	20	4	1352	4	ZNF692	1	249151665	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2121030	249151665	98956	98	61388										
PXDN	0	genome.wustl.edu	37	chr2	1652601	1652601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acagcgtgtgcatgctggtcAggcccagctgctcgttggcg	15	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	1652601	1652601	A	G	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	missense	c.2951	p.L984P	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	37	0	0	25	9	26.47	-	-	-	G	1652601	A	G	1652601	3	3	708	1	0	0	0	0	1	0	0	0	12930	188	7	5	1516	5	PXDN	2	1652601	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		1652601	241546772	99	61389										
GREB1	0	genome.wustl.edu	37	chr2	11696749	11696749	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcctcttgaagatgggaaaTtcttacgctggacagctgaa	10	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	11696749	11696749	T	C	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.9	p.N3	1.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	60	0	0	71	36	33.64	-	-	-	C	11696749	T	C	11696749	2	2	708	1	0	0	0	0	0	0	0	1	6811	1490	52	5		5	GREB1	2	11696749	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	10044148	11696749	231502624	100	61390										
APOB	0	genome.wustl.edu	37	chr2	21236260	21236260	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttggaactctcgagatggcaGatggaatcccacagacttga	11	9	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	21236260	21236260	G	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.3988	p.L1330M	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	77	0	0	111	26	18.98	-	-	-	T	21236260	G	T	21236260	3	4	708	1	0	0	0	0	1	0	0	0	787	933	33	2	9723	2	APOB	2	21236260	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	9539511	21236260	221963113	101	61391										
ITSN2	0	genome.wustl.edu	37	chr2	24535098	24535098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taccaaaacgagcagaaattAatggagaaaacatagggggt	11	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	24535098	24535098	A	G	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.335	p.L112S	0.983	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	66	0	0	53	38	41.76	-	-	-	G	24535098	A	G	24535098	3	3	708	1	0	0	0	0	1	0	0	0	7981	372	13	5	4953	5	ITSN2	2	24535098	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3298838	24535098	218664275	102	61392										
NCOA1	0	genome.wustl.edu	37	chr2	24980898	24980898	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcacagccaggagtatacaAcaacatgagcatcaccgttt	8	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	24980898	24980898	A	G	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	missense	c.3938	p.N1313S	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	107	0	0	70	66	48.53	-	-	-	G	24980898	A	G	24980898	3	3	708	1	0	0	0	0	1	0	0	0	10300	43	2	5	4004	5	NCOA1	2	24980898	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	445800	24980898	218218475	103	61393										
OTOF	0	genome.wustl.edu	37	chr2	26696942	26696942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtccacgtccaccgggccatTgatggggggcaggtcagcct	15	13	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	26696942	26696942	T	C	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.3325	p.N1109D	0.992	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	39	0	0	15	20	57.14	-	-	-	C	26696942	T	C	26696942	3	2	708	1	0	0	0	0	1	0	0	0	11376	1812	63	5	2933	5	OTOF	2	26696942	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1716044	26696942	216502431	104	61394										
LCLAT1	0	genome.wustl.edu	37	chr2	30863518	30863518	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgccatgtgaaaacctagagCatattttggaaatgttctaa	8	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	30863518	30863518	C	T	SNP	LCLAT1	ENST00000491680	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	LCLAT1	HGNC	ENSG00000172954	44	0	0	26	20	43.48	-	-	-	T	30863518	C	T	30863518	1	4	708	0	1	0	0	0	0	0	0	0	8731	725	25	4		4	LCLAT1	2	30863518	RNA	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	4166576	30863518	212335855	105	61395										
XDH	0	genome.wustl.edu	37	chr2	31565141	31565141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttccctgagttagtctcaaAgctgtagcccagattgggtg	12	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	31565141	31565141	A	C	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.3427	p.F1143V	0.999	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	63	0	0	58	50	45.87	-	-	-	C	31565141	A	C	31565141	3	2	708	1	0	0	0	0	1	0	0	0	17523	72	3	5	594	5	XDH	2	31565141	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	701623	31565141	211634232	106	61396										
FAM98A	0	genome.wustl.edu	37	chr2	33813419	33813419	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacttttttttcaatcccgcTgaagaattggaacatagtta	6	7	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	33813419	33813419	T	C	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.505	p.S169G	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	160	0	0	113	67	37.22	-	-	-	C	33813419	T	C	33813419	3	2	708	1	0	0	0	0	1	0	0	0	5702	1580	55	5	1071	5	FAM98A	2	33813419	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2248278	33813419	209385954	107	61397										
STRN	0	genome.wustl.edu	37	chr2	37129876	37129876	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctagaatagtatctgtataAcccacctcctgtagatacct	5	11	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	37129876	37129876	A	G	SNP	STRN	ENST00000263918	human	ensembl	69_37n	-1	known	silent	c.510	p.G170	0.924	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN	HGNC	ENSG00000115808	99	0	0	102	17	14.29	-	-	-	G	37129876	A	G	37129876	2	3	708	1	0	0	0	0	0	0	0	1	15420	30	2	5		5	STRN	2	37129876	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3316457	37129876	206069497	108	61398										
HEATR5B	0	genome.wustl.edu	37	chr2	37286079	37286079	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taggggtcatcaattttcgaAtcacatcttcagttagtagc	8	8	5	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	37286079	37286079	A	T	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	missense	c.1901	p.I634N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	86	0	0	83	53	38.97	-	-	-	T	37286079	A	T	37286079	3	4	708	1	0	0	0	0	1	0	0	0	7083	101	4	5	4410	5	HEATR5B	2	37286079	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	156203	37286079	205913294	109	61399										
THADA	0	genome.wustl.edu	37	chr2	43655254	43655254	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actacctcataatgaagggaAcaaaaggtcccatgctgaga	9	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	43655254	43655254	A	T	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.4043	p.V1348D	0.961	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	44	0	0	65	16	19.75	-	-	-	T	43655254	A	T	43655254	3	4	708	1	0	0	0	0	1	0	0	0	15935	43	2	5	1862	5	THADA	2	43655254	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	6369175	43655254	199544119	110	61400										
FBXO11	0	genome.wustl.edu	37	chr2	48046193	48046193	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actataaacttcattctcttCtattactccttgtccctttt	1	12	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	48046193	48046193	C	A	SNP	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	nonsense	c.1822	p.E608*	1.000	superfamily_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1,tigrfam_Para_beta_helix_rpt-2	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	65	0	0	84	11	11.58	-	-	-	A	48046193	C	A	48046193	4	1	708	1	0	0	0	0	0	1	0	0	5773	922	32	2	1087	2	FBXO11	2	48046193	Nonsense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	4390939	48046193	195153180	111	61401										
NRXN1	0	genome.wustl.edu	37	chr2	50733715	50733715	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actgtgtgccactcgttatcAttgaggttatagccagcaaa	9	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	50733715	50733715	A	G	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	silent	c.2391	p.N797	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	131	0	0	152	42	21.65	-	-	-	G	50733715	A	G	50733715	2	3	708	1	0	0	0	0	0	0	0	1	10738	214	8	5		5	NRXN1	2	50733715	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2687522	50733715	192465658	112	61402										
SPTBN1	0	genome.wustl.edu	37	chr2	54852083	54852083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacttggctgagcgaaaaccAgcgtctggtgtctcaggttc	13	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	54852083	54852083	A	C	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	missense	c.1325	p.Q442P	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	51	0	0	49	29	37.18	-	-	-	C	54852083	A	C	54852083	3	2	708	1	0	0	0	0	1	0	0	0	15210	188	7	5	1476	5	SPTBN1	2	54852083	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4118368	54852083	188347290	113	61403										
USP34	0	genome.wustl.edu	37	chr2	61456055	61456055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaccatgttccataattaaTaacagggttctcacaaagcg	6	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	61456055	61456055	T	C	SNP	USP34	ENST00000411912	human	ensembl	69_37n	-1	novel	missense	c.553	p.I185V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP34	HGNC	ENSG00000115464	76	0	0	79	48	37.8	-	-	-	C	61456055	T	C	61456055	3	2	708	1	0	0	0	0	1	0	0	0	17162	1403	49	5	3449	5	USP34	2	61456055	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6603972	61456055	181743318	114	61404										
USP34	0	genome.wustl.edu	37	chr2	61575404	61575404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttgggaggattatgaccaTgatcatcgtcttcatcttcc	8	9	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	61575404	61575404	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.1886	p.H629R	0.817	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	77	0	0	74	17	18.68	-	-	-	C	61575404	T	C	61575404	3	2	708	1	0	0	0	0	1	0	0	0	17162	1464	51	5	9018	5	USP34	2	61575404	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	119349	61575404	181623969	115	61405										
XPO1	0	genome.wustl.edu	37	chr2	61709572	61709572	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccacatattcctgaagaaagAtttggttgttaactggattt	8	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	61709572	61709572	A	G	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.2915	p.I972T	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	100	0	0	134	66	33	-	-	-	G	61709572	A	G	61709572	3	3	708	1	0	0	0	0	1	0	0	0	17542	333	12	5	312	5	XPO1	2	61709572	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	134168	61709572	181489801	116	61406										
AAK1	0	genome.wustl.edu	37	chr2	69757821	69757821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaccatttctggtgctcgaTaggacagcgttgtgtatcta	11	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	69757821	69757821	T	C	SNP	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	missense	c.674	p.Y225C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	138	0	0	117	74	38.74	-	-	-	C	69757821	T	C	69757821	3	2	708	1	0	0	0	0	1	0	0	0	16	1406	49	5	2275	5	AAK1	2	69757821	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8048249	69757821	173441552	117	61407										
SNRNP27	0	genome.wustl.edu	37	chr2	70131463	70131463	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attgaagtgttgaaggatgaTtttttttcccctcatcttgg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	70131463	70131463	T	-	DEL	SNRNP27	ENST00000409116	human	ensembl	69_37n	1	novel	frame_shift_del	c.426	p.S145fs	0.141	NULL	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380	137	0	0	203	34	14.23	-	-	-	-	70131463	T	-	70131463	7	5	708	1	0	1	0	1	0	0	0	0	14943	1508	52	0		0	SNRNP27	2	70131463	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	373642	70131463	173067910	118	61408										
DYSF	0	genome.wustl.edu	37	chr2	71883420	71883420	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctgtgattggtgaatttaaGgtaaatcctcgaagacgtcc	10	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	71883420	71883420	G	A	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	silent	c.4731	p.K1577	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	50	0	0	70	22	23.91	-	-	-	A	71883420	G	A	71883420	2	1	708	1	0	0	0	0	0	0	0	1	4894	1014	35	4		4	DYSF	2	71883420	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1751957	71883420	171315953	119	61409										
CYP26B1	0	genome.wustl.edu	37	chr2	72362450	72362450	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggtacacgttgatggcctcGgggtggctgctccaggcgcg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	72362450	72362450	G	-	DEL	CYP26B1	ENST00000001146	human	ensembl	69_37n	-1	known	frame_shift_del	c.528	p.E177fs	0.036	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137	36	0	0	33	11	25	-	-	-	-	72362450	G	-	72362450	7	5	708	1	0	1	0	1	0	0	0	0	4187	1103	39	0	1026	0	CYP26B1	2	72362450	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	479030	72362450	170836923	120	61410										
WBP1	0	genome.wustl.edu	37	chr2	74687596	74687596	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggtgacccctgcctccacaCccccctcctgccgctatcgc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	74687596	74687596	C	-	DEL	WBP1	ENST00000233615	human	ensembl	69_37n	1	known	frame_shift_del	c.598	p.S202fs	0.022	NULL	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1	HGNC	ENSG00000239779	22	0	0	25	7	21.88	-	-	-	-	74687596	C	-	74687596	7	5	708	1	0	1	0	1	0	0	0	0	17354	507	18	0	612	0	WBP1	2	74687596	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	2325146	74687596	168511777	121	61411										
SFTPB	0	genome.wustl.edu	37	chr2	85894924	85894924	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggccaaggatgaggtggtccAggcagctgtggtttggggcc	19	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	85894924	85894924	A	G	SNP	SFTPB	ENST00000393822	human	ensembl	69_37n	-1	known	missense	c.109	p.W37R	0.000	pfscan_SapA,prints_Saposin	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878	21	0	0	29	20	40.82	-	-	-	G	85894924	A	G	85894924	3	3	708	1	0	0	0	0	1	0	0	0	14279	188	7	5	1108	5	SFTPB	2	85894924	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	11207328	85894924	157304449	122	61412										
KDM3A	0	genome.wustl.edu	37	chr2	86712078	86712078	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttcagatcgtttgaaaaaTgaaaaagaaccaatggtgtt	8	5	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	86712078	86712078	T	C	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	silent	c.3108	p.N1036	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	64	0	0	79	29	26.85	-	-	-	C	86712078	T	C	86712078	2	2	708	1	0	0	0	0	0	0	0	1	8180	1461	51	5		5	KDM3A	2	86712078	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	817154	86712078	156487295	123	61413										
SMYD1	0	genome.wustl.edu	37	chr2	88409969	88409969	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgccctgaacaaccagcccAtgcaggtcatggccgagccc	10	17	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	88409969	88409969	A	G	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	1	known	missense	c.1411	p.M471V	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	51	0	0	68	8	10.53	-	-	-	G	88409969	A	G	88409969	3	3	708	1	0	0	0	0	1	0	0	0	14910	217	8	5	1449	5	SMYD1	2	88409969	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1697891	88409969	154789404	124	61414										
STARD7	0	genome.wustl.edu	37	chr2	96852623	96852623	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttggctttcagagtggccaTgtgcagcttctccaggaaat	11	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	96852623	96852623	T	C	SNP	STARD7	ENST00000337288	human	ensembl	69_37n	-1	known	missense	c.958	p.M320V	0.849	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD7	HGNC	ENSG00000084090	89	0	0	69	39	36.11	-	-	-	C	96852623	T	C	96852623	3	2	708	1	0	0	0	0	1	0	0	0	15353	1464	51	5	158	5	STARD7	2	96852623	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8442654	96852623	146346750	125	61415										
SNRNP200	0	genome.wustl.edu	37	chr2	96950287	96950287	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagtaccaccttcttgttgaGcctgtcctggaacttctcgt	9	12	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	96950287	96950287	G	C	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.4201	p.L1401V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	136	0	0	167	27	13.92	-	-	-	C	96950287	G	C	96950287	3	2	708	1	0	0	0	0	1	0	0	0	14941	971	34	4	2269	4	SNRNP200	2	96950287	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	97664	96950287	146249086	126	61416										
VWA3B	0	genome.wustl.edu	37	chr2	98928507	98928507	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagcccagggtttgggtgatGgggggggaacacaacatcgc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	98928507	98928507	G	-	DEL	VWA3B	ENST00000473149	human	ensembl	69_37n	1	putative	frame_shift_del	c.1978	p.G662fs	0.004	NULL	pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3B	HGNC	ENSG00000168658	18	0	0	19	6	24	-	-	-	-	98928507	G	-	98928507	7	5	708	1	0	1	0	1	0	0	0	0	17338	1363	47	0		0	VWA3B	2	98928507	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	1978220	98928507	144270866	127	61417										
UNC50	0	genome.wustl.edu	37	chr2	99227309	99227309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taaagcttctcctttgggttGtactcatagattgtgtaggc	10	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	99227309	99227309	G	T	SNP	UNC50	ENST00000409347	human	ensembl	69_37n	1	known	missense	c.403	p.V135L	1.000	pfam_UNC-50	pfam_UNC-50	-	no_errors	UNC50	HGNC	ENSG00000115446	260	0	0	310	87	21.91	-	-	-	T	99227309	G	T	99227309	3	4	708	1	0	0	0	0	1	0	0	0	17087	1377	48	4	358	4	UNC50	2	99227309	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	298802	99227309	143972064	128	61418										
RNF149	0	genome.wustl.edu	37	chr2	101911394	101911394	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagagttatccatcattaccTgacttccaatctgagagcca	6	12	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	101911394	101911394	T	C	SNP	RNF149	ENST00000295317	human	ensembl	69_37n	-1	known	missense	c.710	p.Q237R	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162	31	0	0	19	16	45.71	-	-	-	C	101911394	T	C	101911394	3	2	708	1	0	0	0	0	1	0	0	0	13536	1594	55	5	516	5	RNF149	2	101911394	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2684085	101911394	141287979	129	61419										
NPHP1	0	genome.wustl.edu	37	chr2	110926098	110926098	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctatccaccaaccatcaggTtttttttcaattacaaggag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	110926098	110926098	T	-	DEL	NPHP1	ENST00000316534	human	ensembl	69_37n	-1	known	frame_shift_del	c.555	p.K185fs	0.398	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	132	0	0	150	31	17.13	-	-	-	-	110926098	T	-	110926098	7	5	708	1	0	1	0	1	0	0	0	0	10651	1722	60	0	1706	0	NPHP1	2	110926098	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	9014704	110926098	132273275	130	61420										
BUB1	0	genome.wustl.edu	37	chr2	111417597	111417597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgtggcttgaattcatgagTactcttattcacacatctgg	8	9	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	111417597	111417597	T	C	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	missense	c.1234	p.T412A	0.002	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	120	0	0	106	47	30.13	-	-	-	C	111417597	T	C	111417597	3	2	708	1	0	0	0	0	1	0	0	0	1579	1638	57	5	2083	5	BUB1	2	111417597	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	491499	111417597	131781776	131	61421										
YSK4	0	genome.wustl.edu	37	chr2	135779315	135779315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgatgctttgcaagatgatGttttgatttttggtaactgt	10	4	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	135779315	135779315	G	A	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	silent	c.108	p.N36	0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	118	0	0	141	55	28.06	-	-	-	A	135779315	G	A	135779315	2	1	708	1	0	0	0	0	0	0	0	1	17592	1368	48	4		4	YSK4	2	135779315	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	24361718	135779315	107420058	132	61422										
CXCR4	0	genome.wustl.edu	37	chr2	136873066	136873066	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacagcttccttggcctctgActgttggtggcgtggacgat	13	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	136873066	136873066	A	T	SNP	CXCR4	ENST00000409817	human	ensembl	69_37n	-1	known	missense	c.444	p.S148R	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfam_Chemokine_CXCR4_N,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CXCR4	HGNC	ENSG00000121966	101	0	0	149	35	19.02	-	-	-	T	136873066	A	T	136873066	3	4	708	1	0	0	0	0	1	0	0	0	4124	272	10	5	630	5	CXCR4	2	136873066	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1093751	136873066	106326307	133	61423										
EPC2	0	genome.wustl.edu	37	chr2	149447914	149447914	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgtacaaaggagagtttaaAcagccaaaacagttcattca	7	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	149447914	149447914	A	T	SNP	EPC2	ENST00000258484	human	ensembl	69_37n	1	known	missense	c.285	p.K95N	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999	138	0	0	168	39	18.66	-	-	-	T	149447914	A	T	149447914	3	4	708	1	0	0	0	0	1	0	0	0	5198	40	2	5	291	5	EPC2	2	149447914	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	12574848	149447914	93751459	134	61424										
RIF1	0	genome.wustl.edu	37	chr2	152324612	152324612	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggtcccattcttccaatagTtctcccataggaaaaagtgt	7	10	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	152324612	152324612	T	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.6699	p.S2233R	0.999	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	62	0	0	58	22	27.5	-	-	-	G	152324612	T	G	152324612	3	3	708	1	0	0	0	0	1	0	0	0	13443	1722	60	5	6817	5	RIF1	2	152324612	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2876698	152324612	90874761	135	61425										
NEB	0	genome.wustl.edu	37	chr2	152450704	152450704	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctttagacttctcataagcTttcttatattctctgtcact	3	11	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	152450704	152450704	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.14334	p.K4778	0.966	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	35	0	0	44	16	26.23	-	-	-	C	152450704	T	C	152450704	2	2	708	1	0	0	0	0	0	0	0	1	10374	1606	56	5		5	NEB	2	152450704	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	126092	152450704	90748669	136	61426										
NEB	0	genome.wustl.edu	37	chr2	152541344	152541344	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtccacattgatgctatcaGgggggtagctgtaactgtgt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	152541344	152541344	G	-	DEL	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	frame_shift_del	c.2783	p.P928fs	0.564	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	99	0	0	113	22	16.06	-	-	-	-	152541344	G	-	152541344	7	5	708	1	0	1	0	1	0	0	0	0	10374	1000	35	0	23523	0	NEB	2	152541344	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	90640	152541344	90658029	137	61427										
NR4A2	0	genome.wustl.edu	37	chr2	157185038	157185038	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgtattttgcatttttttgcActgtgcgctgcaaaaggaga	10	7	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	157185038	157185038	A	G	SNP	NR4A2	ENST00000539077	human	ensembl	69_37n	-1	known	missense	c.905	p.V302A	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234	59	0	0	73	11	13.1	-	-	-	G	157185038	A	G	157185038	3	3	708	1	0	0	0	0	1	0	0	0	10706	159	6	5	944	5	NR4A2	2	157185038	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4643694	157185038	86014335	138	61428										
CYTIP	0	genome.wustl.edu	37	chr2	158300407	158300407	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accgtgtctgctagcatttgAatccttctattatcgtccat	6	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	158300407	158300407	A	G	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	silent	c.126	p.I42	0.998	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	92	0	0	124	62	33.33	-	-	-	G	158300407	A	G	158300407	2	3	708	1	0	0	0	0	0	0	0	1	4238	242	9	5		5	CYTIP	2	158300407	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1115369	158300407	84898966	139	61429										
TANC1	0	genome.wustl.edu	37	chr2	160007062	160007062	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggaaagcaaggacagtggaaTtataggtaagaagcacactg	13	5	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	160007062	160007062	T	A	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.677	p.I226N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	49	0	0	60	27	31.03	-	-	-	A	160007062	T	A	160007062	3	1	708	1	0	0	0	0	1	0	0	0	15636	1493	52	5	695	5	TANC1	2	160007062	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1706655	160007062	83192311	140	61430										
BAZ2B	0	genome.wustl.edu	37	chr2	160189132	160189132	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggcagtaggtatgacagccTttgtcacagccatcacaaag	10	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	160189132	160189132	T	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	silent	c.5862	p.K1954	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	93	0	0	90	29	24.17	-	-	-	C	160189132	T	C	160189132	2	2	708	1	0	0	0	0	0	0	0	1	1336	1606	56	5		5	BAZ2B	2	160189132	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	182070	160189132	83010241	141	61431										
LY75	0	genome.wustl.edu	37	chr2	160711424	160711424	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttaactcacctggattgtAccagtctggtgtttttggag	10	8	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	160711424	160711424	A	G	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	missense	c.2410	p.Y804H	1.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	182	0	0	247	38	13.29	-	-	-	G	160711424	A	G	160711424	3	3	708	1	0	0	0	0	1	0	0	0	9166	391	14	5	2834	5	LY75	2	160711424	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	522292	160711424	82487949	142	61432										
PLA2R1	0	genome.wustl.edu	37	chr2	160901313	160901313	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agatattcacaaatgtctccAccacctgacccataagaaat	4	12	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	160901313	160901313	A	G	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	silent	c.465	p.G155	0.814	superfamily_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	34	0	0	44	8	15.38	-	-	-	G	160901313	A	G	160901313	2	3	708	1	0	0	0	0	0	0	0	1	12084	146	6	5		5	PLA2R1	2	160901313	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	189889	160901313	82298060	143	61433										
ITGB6	0	genome.wustl.edu	37	chr2	161055738	161055738	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaataagcaggcagtcttcAcaggtttctgcacctcccag	8	14	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	161055738	161055738	A	G	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	silent	c.93	p.C31	0.998	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	71	0	0	98	37	27.21	-	-	-	G	161055738	A	G	161055738	2	3	708	1	0	0	0	0	0	0	0	1	7953	157	6	5		5	ITGB6	2	161055738	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	154425	161055738	82143635	144	61434										
UBR3	0	genome.wustl.edu	37	chr2	170753213	170753213	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cactgtgctattatacatgaTggaaagttgccttattaaaa	7	6	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	170753213	170753213	T	C	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.1433	p.M478T	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	72	0	0	85	22	20.56	-	-	-	C	170753213	T	C	170753213	3	2	708	1	0	0	0	0	1	0	0	0	17000	1464	51	5	1463	5	UBR3	2	170753213	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	9697475	170753213	72446160	145	61435										
UBR3	0	genome.wustl.edu	37	chr2	170936530	170936530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaagttactgtgaatgtgtActggtaagcaatagtagata	10	4	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	170936530	170936530	A	G	SNP	UBR3	ENST00000392632	human	ensembl	69_37n	1	novel	missense	c.2591	p.Y864C	0.108	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBR3	HGNC	ENSG00000144357	79	0	0	101	34	25.19	-	-	-	G	170936530	A	G	170936530	3	3	708	1	0	0	0	0	1	0	0	0	17000	378	14	5	5552	5	UBR3	2	170936530	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	183317	170936530	72262843	146	61436										
OLA1	0	genome.wustl.edu	37	chr2	174945897	174945897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taccctgatggtccatgcacGcacttcatctgggcctgcag	10	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	174945897	174945897	G	A	SNP	OLA1	ENST00000284719	human	ensembl	69_37n	-1	known	missense	c.949	p.R317C	1.000	pfam_DUF933,superfamily_TGS-like,pirsf_CHP00092,tigrfam_CHP00092	pfam_DUF933,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_TGS-like,pirsf_CHP00092,prints_GTP_binding_domain,tigrfam_CHP00092	-	no_errors	OLA1	HGNC	ENSG00000138430	70	0	0	90	12	11.76	-	-	-	A	174945897	G	A	174945897	3	1	708	1	0	0	0	0	1	0	0	0	10923	1087	38	1	253	1	OLA1	2	174945897	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	4009367	174945897	68253476	147	61437										
TTN	0	genome.wustl.edu	37	chr2	179433320	179433320	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtgagatccagtgaatcggTaacattgattcttgtggtct	12	6	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	179433320	179433320	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.69835	p.T23279S	0.824	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	151	0	0	149	59	28.37	-	-	-	A	179433320	T	A	179433320	3	1	708	1	0	0	0	0	1	0	0	0	16832	1638	57	5	30588	5	TTN	2	179433320	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4487423	179433320	63766053	148	61438										
NBEAL1	0	genome.wustl.edu	37	chr2	204022515	204022515	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtggaggataaattagaccTtcctgaagaggatataacag	12	5	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	204022515	204022515	T	A	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.5594	p.L1865H	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	75	0	0	119	41	25.62	-	-	-	A	204022515	T	A	204022515	3	1	708	1	0	0	0	0	1	0	0	0	10260	1609	56	5	5728	5	NBEAL1	2	204022515	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	24589195	204022515	39176858	149	61439										
ADAM23	0	genome.wustl.edu	37	chr2	207460861	207460861	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatccagttaggaaccttcaCccccccaaggatgaaggacc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	207460861	207460861	C	-	DEL	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	frame_shift_del	c.2334	p.K781fs	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	75	0	0	85	25	22.73	-	-	-	-	207460861	C	-	207460861	7	5	708	1	0	1	0	1	0	0	0	0	245	506	18	0	2428	0	ADAM23	2	207460861	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	3438346	207460861	35738512	150	61440										
PIKFYVE	0	genome.wustl.edu	37	chr2	209201654	209201654	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaaggggaagaaagcaaggTatgaaatgtagtcttgtctt	12	4	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	209201654	209201654	T	C	SNP	PIKFYVE	ENST00000264380	human	ensembl	69_37n	1	known	splice_site	c.4611+2	e27+2	1.000	-	-	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	45	0	0	39	23	37.1	-	-	-	C	209201654	T	C	209201654	5	2	708	1	0	0	0	0	0	0	1	0	11998	1652	57	5	4730	5	PIKFYVE	2	209201654	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1740793	209201654	33997719	151	61441										
ERBB4	0	genome.wustl.edu	37	chr2	212285236	212285236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaaagcctgagggaccaagTactcctcagcatccatcata	8	12	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	212285236	212285236	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.3065	p.Y1022C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	85	0	0	109	24	18.05	-	-	-	C	212285236	T	C	212285236	3	2	708	1	0	0	0	0	1	0	0	0	5246	1638	57	5	877	5	ERBB4	2	212285236	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3083582	212285236	30914137	152	61442										
TMEM169	0	genome.wustl.edu	37	chr2	216964712	216964712	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catcacacgagggaagaaaaAgggtcagatggtggacatcc	13	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	216964712	216964712	A	G	SNP	TMEM169	ENST00000295658	human	ensembl	69_37n	1	known	missense	c.341	p.K114R	1.000	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449	56	0	0	93	17	15.45	-	-	-	G	216964712	A	G	216964712	3	3	708	1	0	0	0	0	1	0	0	0	16179	72	3	5	347	5	TMEM169	2	216964712	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4679476	216964712	26234661	153	61443										
PLCD4	0	genome.wustl.edu	37	chr2	219487380	219487380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctcttgcaggcagcagacaCgtcccagtctggaaccctgg	11	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	219487380	219487380	C	A	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	missense	c.551	p.T184K	0.744	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	55	0	0	69	22	24.18	-	-	-	A	219487380	C	A	219487380	3	1	708	1	0	0	0	0	1	0	0	0	12107	536	19	3	569	3	PLCD4	2	219487380	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2522668	219487380	23711993	154	61444										
STK36	0	genome.wustl.edu	37	chr2	219549920	219549920	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcctgacttctgccagcgcaTccagagtcagctgcatgaag	10	13	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	219549920	219549920	T	A	SNP	STK36	ENST00000295709	human	ensembl	69_37n	1	known	missense	c.1349	p.I450N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK36	HGNC	ENSG00000163482	75	0	0	71	38	34.55	-	-	-	A	219549920	T	A	219549920	3	1	708	1	0	0	0	0	1	0	0	0	15393	1435	50	5	1387	5	STK36	2	219549920	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	62540	219549920	23649453	155	61445										
ANKZF1	0	genome.wustl.edu	37	chr2	220098589	220098589	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatccccgactttgggatatCcccctcgccacccgcagacc	8	19	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	220098589	220098589	C	T	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	1	known	silent	c.972	p.I324	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	51	0	0	41	11	21.15	-	-	-	T	220098589	C	T	220098589	2	4	708	1	0	0	0	0	0	0	0	1	692	845	30	2		2	ANKZF1	2	220098589	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	548669	220098589	23100784	156	61446										
SGPP2	0	genome.wustl.edu	37	chr2	223389675	223389675	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccccacagtatccatttgtgTtgggactggtgatggccgtg	13	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	223389675	223389675	T	C	SNP	SGPP2	ENST00000321276	human	ensembl	69_37n	1	known	silent	c.571	p.L191	0.084	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP2	HGNC	ENSG00000163082	277	1	0.36	369	70	15.91	-	-	-	C	223389675	T	C	223389675	2	2	708	1	0	0	0	0	0	0	0	1	14308	1722	60	5		5	SGPP2	2	223389675	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3291086	223389675	19809698	157	61447										
FARSB	0	genome.wustl.edu	37	chr2	223504404	223504404	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgctaccgcaaaaggacgtAtcttagctgtctgaaattca	8	10	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	223504404	223504404	A	T	SNP	FARSB	ENST00000281828	human	ensembl	69_37n	-1	known	missense	c.350	p.I117K	0.999	smart_B3/B4_tRNA-bd,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120	58	0	0	83	10	10.75	-	-	-	T	223504404	A	T	223504404	3	4	708	1	0	0	0	0	1	0	0	0	5726	449	16	5	1471	5	FARSB	2	223504404	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	114729	223504404	19694969	158	61448										
PSMD1	0	genome.wustl.edu	37	chr2	231943447	231943447	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgcactgtgggacaaccagTgaccagtttcttaggtaaat	10	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	231943447	231943447	T	C	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	silent	c.1146	p.S382	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	101	0	0	140	57	28.93	-	-	-	C	231943447	T	C	231943447	2	2	708	1	0	0	0	0	0	0	0	1	12772	1693	59	5		5	PSMD1	2	231943447	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8439043	231943447	11255926	159	61449										
GIGYF2	0	genome.wustl.edu	37	chr2	233697794	233697794	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagcagcaacaacagctggcGcagatgaaggtaaagcccga	12	11	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	233697794	233697794	G	A	SNP	GIGYF2	ENST00000373566	human	ensembl	69_37n	1	known	silent	c.2823	p.A941	0.019	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	15	0	0	19	5	20	-	-	-	A	233697794	G	A	233697794	2	1	708	1	0	0	0	0	0	0	0	1	6430	1074	38	1		1	GIGYF2	2	233697794	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1754347	233697794	9501579	160	61450										
NGEF	0	genome.wustl.edu	37	chr2	233791755	233791755	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttactgcggagacacccaccTatttgttcaatgaggtttct	8	10	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	233791755	233791755	T	C	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	missense	c.525	p.I175M	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	43	0	0	42	5	10.64	-	-	-	C	233791755	T	C	233791755	3	2	708	1	0	0	0	0	1	0	0	0	10466	1536	53	5	1655	5	NGEF	2	233791755	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	93961	233791755	9407618	161	61451										
AGAP1	0	genome.wustl.edu	37	chr2	236653360	236653360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtttgccatgtgggtggacGctgttatatttgtcttcagc	12	7	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	236653360	236653360	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	missense	c.415	p.A139T	1.000	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	130	0	0	128	38	22.89	-	-	-	A	236653360	G	A	236653360	3	1	708	1	0	0	0	0	1	0	0	0	366	1087	38	1	433	1	AGAP1	2	236653360	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2861605	236653360	6546013	162	61452										
PER2	0	genome.wustl.edu	37	chr2	239165684	239165684	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccagcgaggtcaggtgcgtAcctactcccgtgcggctgtt	14	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	239165684	239165684	A	G	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	silent	c.1944	p.G648	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	63	0	0	36	19	34.55	-	-	-	G	239165684	A	G	239165684	2	3	708	1	0	0	0	0	0	0	0	1	11803	378	14	5		5	PER2	2	239165684	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2512324	239165684	4033689	163	61453										
ASB1	0	genome.wustl.edu	37	chr2	239353276	239353276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtagaatttggagccaaccTgaatctagtgaagtgggaat	13	5	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	239353276	239353276	T	C	SNP	ASB1	ENST00000264607	human	ensembl	69_37n	1	known	missense	c.788	p.L263P	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802	60	0	0	46	19	29.23	-	-	-	C	239353276	T	C	239353276	3	2	708	1	0	0	0	0	1	0	0	0	1017	1580	55	5	802	5	ASB1	2	239353276	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	187592	239353276	3846097	164	61454										
FARP2	0	genome.wustl.edu	37	chr2	242352812	242352812	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagcactgccttgagaagaTactagaattccatcagaagc	9	10	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	2	242352812	242352812	T	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	1	known	missense	c.599	p.I200K	0.994	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FARP2	HGNC	ENSG00000006607	61	0	0	53	22	29.33	-	-	-	A	242352812	T	A	242352812	3	1	708	1	0	0	0	0	1	0	0	0	5723	1406	49	5	621	5	FARP2	2	242352812	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2999536	242352812	846561	165	61455										
TRNT1	0	genome.wustl.edu	37	chr3	3189148	3189148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctacaggtttacctgctaatGcaagtttagaagaatttgac	8	7	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	3189148	3189148	G	A	SNP	TRNT1	ENST00000251607	human	ensembl	69_37n	1	known	missense	c.817	p.A273T	1.000	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756	30	0	0	48	18	27.27	-	-	-	A	3189148	G	A	3189148	3	1	708	1	0	0	0	0	1	0	0	0	16669	1319	46	4	839	4	TRNT1	3	3189148	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		3189148	194833282	166	61456										
THUMPD3	0	genome.wustl.edu	37	chr3	9412821	9412821	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttaaaagtgtggaaaattaaTgccagttttaaaaagaaaaa	7	2	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	9412821	9412821	T	C	SNP	THUMPD3	ENST00000345094	human	ensembl	69_37n	1	known	silent	c.408	p.N136	0.354	NULL	pfam_RNA_methylase_dom,pfam_THUMP,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD3	HGNC	ENSG00000134077	36	0	0	42	16	27.12	-	-	-	C	9412821	T	C	9412821	2	2	708	1	0	0	0	0	0	0	0	1	15979	1461	51	5		5	THUMPD3	3	9412821	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6223673	9412821	188609609	167	61457										
MTMR14	0	genome.wustl.edu	37	chr3	9730753	9730753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggtcccagcaggagcgccaActcaggcagcttggtaaggg	15	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	9730753	9730753	A	G	SNP	MTMR14	ENST00000296003	human	ensembl	69_37n	1	known	missense	c.1420	p.T474A	0.906	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719	32	0	0	55	12	17.91	-	-	-	G	9730753	A	G	9730753	3	3	708	1	0	0	0	0	1	0	0	0	10014	43	2	5	1482	5	MTMR14	3	9730753	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	317932	9730753	188291677	168	61458										
FANCD2	0	genome.wustl.edu	37	chr3	10114941	10114941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttttaatataaaagaaagGaaacaaaaaacagatggcag	7	4	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	10114941	10114941	G	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.2610	p.R870S	0.556	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	29	0	0	31	18	36.73	-	-	-	T	10114941	G	T	10114941	3	4	708	1	0	0	0	0	1	0	0	0	5711	1165	41	2	2716	2	FANCD2	3	10114941	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	384188	10114941	187907489	169	61459										
RPL32	0	genome.wustl.edu	37	chr3	12881679	12881679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtctgactggtgccggatgaActtcttggttctctttttga	11	8	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	12881679	12881679	A	G	SNP	RPL32	ENST00000396953	human	ensembl	69_37n	-1	known	missense	c.58	p.F20L	1.000	pfam_Ribosomal_L32e,superfamily_Ribosomal_L32e	pfam_Ribosomal_L32e,superfamily_Ribosomal_L32e	-	no_errors	RPL32	HGNC	ENSG00000144713	146	0	0	197	37	15.68	-	-	-	G	12881679	A	G	12881679	3	3	708	1	0	0	0	0	1	0	0	0	13668	43	2	5	361	5	RPL32	3	12881679	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2766738	12881679	185140751	170	61460										
FGD5	0	genome.wustl.edu	37	chr3	14862849	14862849	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgcccttcctgcccttgccActgaccaagccacggtccat	7	20	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	14862849	14862849	A	G	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.2271	p.P757	0.732	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	56	0	0	29	54	65.06	-	-	-	G	14862849	A	G	14862849	2	3	708	1	0	0	0	0	0	0	0	1	5882	146	6	5		5	FGD5	3	14862849	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1981170	14862849	183159581	171	61461										
ZFYVE20	0	genome.wustl.edu	37	chr3	15137516	15137516	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacatcacggtcttcccctgAgtgttcttcctcgtaatgtg	9	12	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	15137516	15137516	A	C	SNP	ZFYVE20	ENST00000253699	human	ensembl	69_37n	-1	known	missense	c.112	p.S38A	0.998	pfscan_Znf_C2H2	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381	203	1	0.49	236	90	27.61	-	-	-	C	15137516	A	C	15137516	3	2	708	1	0	0	0	0	1	0	0	0	17762	304	11	5	2286	5	ZFYVE20	3	15137516	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	274667	15137516	182884914	172	61462										
EAF1	0	genome.wustl.edu	37	chr3	15471489	15471489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agttggcaaaggagatgaagTcacaattacactgccacata	9	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	15471489	15471489	T	C	SNP	EAF1	ENST00000396842	human	ensembl	69_37n	1	known	missense	c.173	p.V58A	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF1	HGNC	ENSG00000144597	127	0	0	168	60	26.32	-	-	-	C	15471489	T	C	15471489	3	2	708	1	0	0	0	0	1	0	0	0	4910	1667	58	5	179	5	EAF1	3	15471489	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	333973	15471489	182550941	173	61463										
PLCL2	0	genome.wustl.edu	37	chr3	17131386	17131386	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcatacccgaaaaagcaaaCgatgaaactggagaatgagg	11	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	17131386	17131386	C	G	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.2988	p.N996K	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	39	0	0	52	22	29.73	-	-	-	G	17131386	C	G	17131386	3	3	708	1	0	0	0	0	1	0	0	0	12114	535	19	3	3382	3	PLCL2	3	17131386	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1659897	17131386	180891044	174	61464										
SATB1	0	genome.wustl.edu	37	chr3	18438674	18438674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgttttttttgcttacccaTcatatcttttgtcttcttga	4	8	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	18438674	18438674	T	C	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.748	p.M250V	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	222	1	0.45	281	98	25.86	-	-	-	C	18438674	T	C	18438674	3	2	708	1	0	0	0	0	1	0	0	0	13940	1435	50	5	1567	5	SATB1	3	18438674	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1307288	18438674	179583756	175	61465										
SLC4A7	0	genome.wustl.edu	37	chr3	27446348	27446348	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atttatataaaattttttcaAacactagaactggacctgtg	5	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	27446348	27446348	A	C	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	missense	c.2048	p.F683C	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867	57	0	0	52	30	36.59	-	-	-	C	27446348	A	C	27446348	3	2	708	1	0	0	0	0	1	0	0	0	14747	14	1	5	1671	5	SLC4A7	3	27446348	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	9007674	27446348	170576082	176	61466										
MLH1	0	genome.wustl.edu	37	chr3	37045916	37045916	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggccagcataagccatgtgGctcatgttactattacaacg	9	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	37045916	37045916	G	C	SNP	MLH1	ENST00000231790	human	ensembl	69_37n	1	known	missense	c.331	p.A111P	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242	126	0	0	89	68	43.31	-	-	-	C	37045916	G	C	37045916	3	2	708	1	0	0	0	0	1	0	0	0	9688	1203	42	4	345	4	MLH1	3	37045916	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	9599568	37045916	160976514	177	61467										
GOLGA4	0	genome.wustl.edu	37	chr3	37366139	37366139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaaatgagagaaggacagaAgaaagaaattgagatactca	10	4	1	6			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	37366139	37366139	A	G	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	missense	c.2762	p.K921R	0.250	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	28	0	0	31	6	16.22	-	-	-	G	37366139	A	G	37366139	3	3	708	1	0	0	0	0	1	0	0	0	6607	72	3	5	2886	5	GOLGA4	3	37366139	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	320223	37366139	160656291	178	61468										
SCN10A	0	genome.wustl.edu	37	chr3	38766669	38766669	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagctgacatacctacctcaGcagggacctgaggaacagac	10	12	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	38766669	38766669	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3224	p.A1075G	0.039	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	32	0	0	18	11	37.93	-	-	-	C	38766669	G	C	38766669	3	2	708	1	0	0	0	0	1	0	0	0	14000	971	34	4	2690	4	SCN10A	3	38766669	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1400530	38766669	159255761	179	61469										
SCN10A	0	genome.wustl.edu	37	chr3	38802201	38802201	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatccattgccacacagtaaGgggtcagaagtgcctcgctt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	38802201	38802201	G	-	DEL	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	frame_shift_del	c.921	p.L308fs	0.988	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	74	0	0	60	34	36.17	-	-	-	-	38802201	G	-	38802201	7	5	708	1	0	1	0	1	0	0	0	0	14000	987	35	0	5033	0	SCN10A	3	38802201	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	35532	38802201	159220229	180	61470										
GORASP1	0	genome.wustl.edu	37	chr3	39140303	39140303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgagacagctgtggtggtcAgttctgtggaagagggcagg	18	5	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	39140303	39140303	A	G	SNP	GORASP1	ENST00000319283	human	ensembl	69_37n	-1	known	missense	c.998	p.L333P	0.000	pfam_GRASP55/65_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP1	HGNC	ENSG00000114745	98	0	0	77	30	28.04	-	-	-	G	39140303	A	G	39140303	3	3	708	1	0	0	0	0	1	0	0	0	6624	188	7	5	332	5	GORASP1	3	39140303	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	338102	39140303	158882127	181	61471										
ZNF167	0	genome.wustl.edu	37	chr3	44612841	44612841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcacactggagagaagtccTcaggtctggcttggtcagtt	12	10	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	44612841	44612841	T	C	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.2239	p.S747P	0.023	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	80	0	0	56	42	42.86	-	-	-	C	44612841	T	C	44612841	3	2	708	1	0	0	0	0	1	0	0	0	17837	1551	54	5	2257	5	ZNF167	3	44612841	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5472538	44612841	153409589	182	61472										
SETD2	0	genome.wustl.edu	37	chr3	47129671	47129671	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaccattagccgggataagcTgagcacctggtttttatcag	10	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	47129671	47129671	T	C	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.5209	p.S1737G	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	63	0	0	73	43	37.07	-	-	-	C	47129671	T	C	47129671	3	2	708	1	0	0	0	0	1	0	0	0	14219	1580	55	5	2533	5	SETD2	3	47129671	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2516830	47129671	150892759	183	61473										
SLC25A20	0	genome.wustl.edu	37	chr3	48929454	48929454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaaacagtcaaaggtcccagAgtacatgggaggttgtccag	13	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	48929454	48929454	A	G	SNP	SLC25A20	ENST00000319017	human	ensembl	69_37n	-1	known	missense	c.157	p.S53P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A20	HGNC	ENSG00000178537	57	0	0	45	29	39.19	-	-	-	G	48929454	A	G	48929454	3	3	708	1	0	0	0	0	1	0	0	0	14572	304	11	5	780	5	SLC25A20	3	48929454	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1799783	48929454	149092976	184	61474										
LAMB2	0	genome.wustl.edu	37	chr3	49168278	49168278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acgtgtgttgtgtttgcagaTgcaagctccgtgcacctata	11	9	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	49168278	49168278	T	C	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.931	p.I311V	0.553	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	107	0	0	87	27	23.68	-	-	-	C	49168278	T	C	49168278	3	2	708	1	0	0	0	0	1	0	0	0	8665	1464	51	5	4565	5	LAMB2	3	49168278	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	238824	49168278	148854152	185	61475										
AMIGO3	0	genome.wustl.edu	37	chr3	49756369	49756369	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggtggcgctcagaccgtgcAggtggtcgaaggagaacgag	19	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	49756369	49756369	A	G	SNP	AMIGO3	ENST00000320431	human	ensembl	69_37n	-1	known	missense	c.530	p.L177P	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	AMIGO3	HGNC	ENSG00000176020	22	0	0	23	11	32.35	-	-	-	G	49756369	A	G	49756369	3	3	708	1	0	0	0	0	1	0	0	0	577	188	7	5	988	5	AMIGO3	3	49756369	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	588091	49756369	148266061	186	61476										
DUSP7	0	genome.wustl.edu	37	chr3	52088095	52088095	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgacattgaggatatacttGatgccatacttgccgagcac	10	9	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	52088095	52088095	G	C	SNP	DUSP7	ENST00000296483	human	ensembl	69_37n	-1	known	missense	c.660	p.I220M	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP7	HGNC	ENSG00000164086	204	0	0	141	110	43.82	-	-	-	C	52088095	G	C	52088095	3	2	708	1	0	0	0	0	1	0	0	0	4865	1280	45	2	454	2	DUSP7	3	52088095	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2331726	52088095	145934335	187	61477										
STAB1	0	genome.wustl.edu	37	chr3	52544367	52544367	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tatccatggctctcacaggcTgagtgtgtccctgggtccct	11	13	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	52544367	52544367	T	C	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	silent	c.2631	p.A877	0.953	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	118	0	0	68	38	35.85	-	-	-	C	52544367	T	C	52544367	2	2	708	1	0	0	0	0	0	0	0	1	15328	1567	55	5		5	STAB1	3	52544367	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	456272	52544367	145478063	188	61478										
GLT8D1	0	genome.wustl.edu	37	chr3	52729457	52729457	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctacattgagtttcatccaTttttccagttggttagttat							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	52729457	52729457	T	-	DEL	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	frame_shift_del	c.792	p.K264fs	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	157	0	0	134	80	37.04	-	-	-	-	52729457	T	-	52729457	7	5	708	1	0	1	0	1	0	0	0	0	6521	1490	52	0	335	0	GLT8D1	3	52729457	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	185090	52729457	145292973	189	61479										
CACNA1D	0	genome.wustl.edu	37	chr3	53765136	53765136	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaaaataaaaagaacaacaAaccagaagtcaaccagatag	6	7	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	53765136	53765136	A	G	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.2429	p.K810R	0.991	prints_LVDCC_a1dsu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	114	0	0	71	39	35.45	-	-	-	G	53765136	A	G	53765136	3	3	708	1	0	0	0	0	1	0	0	0	2566	14	1	5	2607	5	CACNA1D	3	53765136	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1035679	53765136	144257294	190	61480										
CCDC66	0	genome.wustl.edu	37	chr3	56605270	56605271	+	Frame_Shift_Ins	INS	-	-	A													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaaatggaatgatccttggINSaaaaaatctgaaagtgataa							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	56605270	56605271	-	A	INS	CCDC66	ENST00000394672	human	ensembl	69_37n	1	known	frame_shift_ins	c.876_877	p.S294fs	1.000:0.989	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	36	0	0	29	18	38.3	-	-	-	A	56605271	-	A	56605270	7	5	708	1	0	1	1	0	0	0	0	0	2865	1183	41	0	902	0	CCDC66	3	56605270	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	2840134	56605270	141417160	191	61481										
DNAH12	0	genome.wustl.edu	37	chr3	57439118	57439118	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttctgaagttccttataatActtctttaatccctacaaaa	3	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	57439118	57439118	A	G	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.3400	p.Y1134H	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	90	0	0	58	52	46.85	-	-	-	G	57439118	A	G	57439118	3	3	708	1	0	0	0	0	1	0	0	0	4636	391	14	5	6022	5	DNAH12	3	57439118	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	833848	57439118	140583312	192	61482										
DNAH12	0	genome.wustl.edu	37	chr3	57496562	57496562	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaagtcacttgacacctcatTtatgagactttcaagaagtt	6	8	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	57496562	57496562	T	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.424	p.N142Y	0.009	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	100	0	0	90	19	17.43	-	-	-	A	57496562	T	A	57496562	3	1	708	1	0	0	0	0	1	0	0	0	4636	1841	64	5	9117	5	DNAH12	3	57496562	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	57444	57496562	140525868	193	61483										
FAM116A	0	genome.wustl.edu	37	chr3	57619029	57619029	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttgtgtcagttccaaaaaaTagcgtcgaagaataacactt	7	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	57619029	57619029	T	G	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1316	p.Y439S	1.000	pfam_Afi1_N	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	61	0	0	53	9	14.52	-	-	-	G	57619029	T	G	57619029	3	3	708	1	0	0	0	0	1	0	0	0	5447	1406	49	5	534	5	FAM116A	3	57619029	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	122467	57619029	140403401	194	61484										
MAGI1	0	genome.wustl.edu	37	chr3	65342309	65342309	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgggggacctcctctgctccAggagtctctccagagaccgt	12	15	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	65342309	65342309	A	T	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.4133	p.L1378Q	0.451	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	45	0	0	30	16	34.78	-	-	-	T	65342309	A	T	65342309	3	4	708	1	0	0	0	0	1	0	0	0	9261	188	7	5	259	5	MAGI1	3	65342309	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7723280	65342309	132680121	195	61485										
MINA	0	genome.wustl.edu	37	chr3	97673260	97673260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctggtaggtgctgatggtcAcgtgagtagagtgggccagc	17	7	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	97673260	97673260	A	G	SNP	MINA	ENST00000333396	human	ensembl	69_37n	-1	known	missense	c.761	p.V254A	1.000	pfam_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	MINA	HGNC	ENSG00000170854	93	0	0	107	42	28.19	-	-	-	G	97673260	A	G	97673260	3	3	708	1	0	0	0	0	1	0	0	0	9657	159	6	5	660	5	MINA	3	97673260	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	32330951	97673260	100349170	196	61486										
OR5K3	0	genome.wustl.edu	37	chr3	98109906	98109906	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tatgcaacccactgcagtacCacaccatgatgtccaagaca	6	14	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	98109906	98109906	C	G	SNP	OR5K3	ENST00000383695	human	ensembl	69_37n	1	known	missense	c.397	p.H133D	0.950	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536	175	1	0.57	172	67	28.03	-	-	-	G	98109906	C	G	98109906	3	3	708	1	0	0	0	0	1	0	0	0	11241	594	21	4	399	4	OR5K3	3	98109906	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	436646	98109906	99912524	197	61487										
GPR15	0	genome.wustl.edu	37	chr3	98251821	98251821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catccgccgggccattgtccActgcttgtgcccttgcctga	10	16	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	98251821	98251821	A	G	SNP	GPR15	ENST00000284311	human	ensembl	69_37n	1	known	missense	c.944	p.H315R	0.000	pfam_7TM_GPCR_serpentine_rcpt_Srv	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165	33	0	0	23	12	34.29	-	-	-	G	98251821	A	G	98251821	3	3	708	1	0	0	0	0	1	0	0	0	6705	159	6	5	946	5	GPR15	3	98251821	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	141915	98251821	99770609	198	61488										
SENP7	0	genome.wustl.edu	37	chr3	101062691	101062691	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caacgggtaagaaagctctaAttctccactgattatactta	6	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	101062691	101062691	A	G	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	silent	c.1945	p.L649	0.148	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	41	0	0	65	25	27.78	-	-	-	G	101062691	A	G	101062691	2	3	708	1	0	0	0	0	0	0	0	1	14139	98	4	5		5	SENP7	3	101062691	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2810870	101062691	96959739	199	61489										
SENP7	0	genome.wustl.edu	37	chr3	101083810	101083810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaacttttatgttcaacaggTccttcttcatcactggaaac	6	10	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	101083810	101083810	T	C	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	silent	c.1344	p.G448	0.850	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	98	0	0	120	40	24.84	-	-	-	C	101083810	T	C	101083810	2	2	708	1	0	0	0	0	0	0	0	1	14139	1654	58	5		5	SENP7	3	101083810	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	21119	101083810	96938620	200	61490										
ZPLD1	0	genome.wustl.edu	37	chr3	102187981	102187981	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgccccttccttatgccggTatgtttttaaggaacttcat	7	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	102187981	102187981	T	C	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	splice_site	c.981+2	e8+2	1.000	-	-	-	no_errors	ZPLD1	HGNC	ENSG00000170044	123	0	0	133	46	25.56	-	-	-	C	102187981	T	C	102187981	5	2	708	1	0	0	0	0	0	0	1	0	18314	1652	57	5	1013	5	ZPLD1	3	102187981	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1104171	102187981	95834449	201	61491										
DZIP3	0	genome.wustl.edu	37	chr3	108367765	108367765	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aataattttttacctactagGttaagagtaaacaaaggaaa	6	4	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	108367765	108367765	G	C	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	missense	c.1963	p.V655L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	40	0	0	50	17	25.37	-	-	-	C	108367765	G	C	108367765	3	2	708	1	0	0	0	0	1	0	0	0	4900	1275	44	4	2025	4	DZIP3	3	108367765	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	6179784	108367765	89654665	202	61492										
PLCXD2	0	genome.wustl.edu	37	chr3	111432906	111432906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttccatgtctcccaagcgaTcctcacccccagagtgaaga	7	16	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	111432906	111432906	T	C	SNP	PLCXD2	ENST00000477665	human	ensembl	69_37n	1	known	missense	c.797	p.I266T	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891	26	0	0	33	8	19.51	-	-	-	C	111432906	T	C	111432906	3	2	708	1	0	0	0	0	1	0	0	0	12116	1435	50	5	807	5	PLCXD2	3	111432906	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3065141	111432906	86589524	203	61493										
PHLDB2	0	genome.wustl.edu	37	chr3	111685516	111685516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggagagacttttgaagcaggCtcatgcagaaaagacgcggc	14	8	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	111685516	111685516	C	T	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.3134	p.A1045V	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	51	0	0	78	41	34.45	-	-	-	T	111685516	C	T	111685516	3	4	708	1	0	0	0	0	1	0	0	0	11926	797	28	4	3269	4	PHLDB2	3	111685516	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	252610	111685516	86336914	204	61494										
KIAA1407	0	genome.wustl.edu	37	chr3	113755558	113755558	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcattgcagaatctaccacaTttttatggagcagatggtct							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	113755558	113755558	T	-	DEL	KIAA1407	ENST00000295878	human	ensembl	69_37n	-1	known	frame_shift_del	c.491	p.N164fs	1.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617	180	0	0	205	65	24.07	-	-	-	-	113755558	T	-	113755558	7	5	708	1	0	1	0	1	0	0	0	0	8281	1493	52	0	2371	0	KIAA1407	3	113755558	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	2070042	113755558	84266872	205	61495										
POLQ	0	genome.wustl.edu	37	chr3	121248613	121248613	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcacaaatcgtctcataacaTaaactaacaacatggtcctc	3	12	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	121248613	121248613	T	A	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.987	p.L329F	1.000	pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	61	0	0	58	19	24.36	-	-	-	A	121248613	T	A	121248613	3	1	708	1	0	0	0	0	1	0	0	0	12282	1403	49	5	6881	5	POLQ	3	121248613	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	7493055	121248613	76773817	206	61496										
GOLGB1	0	genome.wustl.edu	37	chr3	121414699	121414699	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaagacctgtccatttctgtAatgagtttgtctctttcttc	6	9	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	121414699	121414699	A	G	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	silent	c.4656	p.I1552	0.948	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	101	0	0	98	37	27.41	-	-	-	G	121414699	A	G	121414699	2	3	708	1	0	0	0	0	0	0	0	1	6614	358	13	5		5	GOLGB1	3	121414699	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	166086	121414699	76607731	207	61497										
OSBPL11	0	genome.wustl.edu	37	chr3	125301808	125301808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcattaaatagccatacacaTtttccatgtgatcactattt	3	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	125301808	125301808	T	C	SNP	OSBPL11	ENST00000296220	human	ensembl	69_37n	-1	known	missense	c.179	p.N60S	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	43	0	0	70	18	20.45	-	-	-	C	125301808	T	C	125301808	3	2	708	1	0	0	0	0	1	0	0	0	11349	1493	52	5	2112	5	OSBPL11	3	125301808	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3887109	125301808	72720622	208	61498										
PIK3R4	0	genome.wustl.edu	37	chr3	130449170	130449170	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctgtgtcataatttccatTtggatgtgtaacctcatcta	6	9	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	130449170	130449170	T	G	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.1567	p.N523H	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	128	0	0	135	35	20.59	-	-	-	G	130449170	T	G	130449170	3	3	708	1	0	0	0	0	1	0	0	0	11995	1841	64	5	2573	5	PIK3R4	3	130449170	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5147362	130449170	67573260	209	61499										
TRPC1	0	genome.wustl.edu	37	chr3	142511768	142511768	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttctaagttatcttcgtctcTtttttatgtatacaaccagc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	142511768	142511768	T	-	DEL	TRPC1	ENST00000476941	human	ensembl	69_37n	1	known	frame_shift_del	c.1540	p.F515fs	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935	133	0	0	154	58	27.1	-	-	-	-	142511768	T	-	142511768	7	5	708	1	0	1	0	1	0	0	0	0	16674	1609	56	0	1468	0	TRPC1	3	142511768	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	12062598	142511768	55510662	210	61500										
MYNN	0	genome.wustl.edu	37	chr3	169500427	169500427	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcactcattctcgaaaacaTacaggtaagtttgacaggga	8	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	169500427	169500427	T	A	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	1	known	missense	c.1395	p.H465Q	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	95	0	0	167	37	18.14	-	-	-	A	169500427	T	A	169500427	3	1	708	1	0	0	0	0	1	0	0	0	10133	1403	49	5	1409	5	MYNN	3	169500427	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	26988659	169500427	28522003	211	61501										
TNIK	0	genome.wustl.edu	37	chr3	170895125	170895125	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggtacttacggggagcaccTtctgccatttcaatggcggt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	170895125	170895125	T	-	DEL	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	frame_shift_del	c.684	p.G229fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	67	0	0	108	28	20.59	-	-	-	-	170895125	T	-	170895125	7	5	708	1	0	1	0	1	0	0	0	0	16408	1606	56	0	3502	0	TNIK	3	170895125	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	1394698	170895125	27127305	212	61502										
SPATA16	0	genome.wustl.edu	37	chr3	172737320	172737320	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacatctaaacactgttgcTtgacgaagatgattccggaa	9	8	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	172737320	172737320	T	C	SNP	SPATA16	ENST00000351008	human	ensembl	69_37n	-1	known	silent	c.804	p.Q268	0.998	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962	140	0	0	221	50	18.45	-	-	-	C	172737320	T	C	172737320	2	2	708	1	0	0	0	0	0	0	0	1	15092	1606	56	5		5	SPATA16	3	172737320	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1842195	172737320	25285110	213	61503										
NAALADL2	0	genome.wustl.edu	37	chr3	174951810	174951810	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctctttgggcctagaagatgTacagtttgtaaattactctg	9	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	174951810	174951810	T	C	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.635	p.V212A	0.587	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	77	0	0	131	24	15.48	-	-	-	C	174951810	T	C	174951810	3	2	708	1	0	0	0	0	1	0	0	0	10202	1638	57	5	645	5	NAALADL2	3	174951810	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2214490	174951810	23070620	214	61504										
USP13	0	genome.wustl.edu	37	chr3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaaaggaggaattccaagaTttttttaggtaaatagttat							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	179408081	179408081	T	-	DEL	USP13	ENST00000263966	human	ensembl	69_37n	1	known	frame_shift_del	c.347	p.L118fs	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	177	0	0	314	78	19.75	-	-	-	-	179408081	T	-	179408081	7	5	708	1	0	1	0	1	0	0	0	0	17141	1493	52	0	357	0	USP13	3	179408081	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	4456271	179408081	18614349	215	61505										
USP13	0	genome.wustl.edu	37	chr3	179424844	179424844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacctcacccagctggacaaTggagtcaggattcctccaag	9	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	179424844	179424844	T	C	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	silent	c.600	p.N200	0.905	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	67	0	0	110	29	20.86	-	-	-	C	179424844	T	C	179424844	2	2	708	1	0	0	0	0	0	0	0	1	17141	1461	51	5		5	USP13	3	179424844	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	16763	179424844	18597586	216	61506										
ABCC5	0	genome.wustl.edu	37	chr3	183683014	183683014	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagaatggccaggtcaggccTcaggcagcagctgttcagca	13	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	183683014	183683014	T	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.1990	p.R664G	1.000	pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	73	0	0	80	30	27.27	-	-	-	C	183683014	T	C	183683014	3	2	708	1	0	0	0	0	1	0	0	0	56	1550	54	5	2391	5	ABCC5	3	183683014	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4258170	183683014	14339416	217	61507										
FAM131A	0	genome.wustl.edu	37	chr3	184059929	184059929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgagtggctcacctcattgAgtggaagggctggagcaagc	15	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	184059929	184059929	A	G	SNP	FAM131A	ENST00000383847	human	ensembl	69_37n	1	known	missense	c.401	p.E134G	1.000	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182	52	0	0	56	21	27.27	-	-	-	G	184059929	A	G	184059929	3	3	708	1	0	0	0	0	1	0	0	0	5479	304	11	5	415	5	FAM131A	3	184059929	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	376915	184059929	13962501	218	61508										
AHSG	0	genome.wustl.edu	37	chr3	186338515	186338515	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cccccagactcccatgtgttActggcagctcctccaggaca	8	17	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	186338515	186338515	A	G	SNP	AHSG	ENST00000411641	human	ensembl	69_37n	1	known	silent	c.900	p.L300	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192	44	0	0	63	21	25	-	-	-	G	186338515	A	G	186338515	2	3	708	1	0	0	0	0	0	0	0	1	420	388	14	5		5	AHSG	3	186338515	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2278586	186338515	11683915	219	61509										
HRG	0	genome.wustl.edu	37	chr3	186395438	186395438	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcccaggtaaaggaccccgTcccttccattgcagacaaat	9	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	186395438	186395438	T	C	SNP	HRG	ENST00000232003	human	ensembl	69_37n	1	known	silent	c.1344	p.R448	0.095	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905	47	0	0	65	23	26.14	-	-	-	C	186395438	T	C	186395438	2	2	708	1	0	0	0	0	0	0	0	1	7405	1654	58	5		5	HRG	3	186395438	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	56923	186395438	11626992	220	61510										
LPP	0	genome.wustl.edu	37	chr3	188478051	188478051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctgtggaaaagaaagcatActgcgagccctgctacattg	11	9	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	188478051	188478051	A	G	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.1391	p.Y464C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	124	0	0	170	74	30.2	-	-	-	G	188478051	A	G	188478051	3	3	708	1	0	0	0	0	1	0	0	0	8989	391	14	5	1413	5	LPP	3	188478051	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2082613	188478051	9544379	221	61511										
IL1RAP	0	genome.wustl.edu	37	chr3	190326897	190326897	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actgtatatagaatatggcaTtcagaggatcacttgtccaa	8	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	190326897	190326897	T	A	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.464	p.I155N	0.287	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	96	0	0	117	45	27.61	-	-	-	A	190326897	T	A	190326897	3	1	708	1	0	0	0	0	1	0	0	0	7714	1493	52	5	474	5	IL1RAP	3	190326897	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1848846	190326897	7695533	222	61512										
MFI2	0	genome.wustl.edu	37	chr3	196749976	196749976	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagctgcccccaaaatagtCgctgacagctgtgggaagga	13	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	3	196749976	196749976	C	G	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.496	p.D166H	0.015	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	18	0	0	11	20	64.52	-	-	-	G	196749976	C	G	196749976	3	3	708	1	0	0	0	0	1	0	0	0	9593	884	31	3	1969	3	MFI2	3	196749976	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	6423079	196749976	1272454	223	61513										
PIGG	0	genome.wustl.edu	37	chr4	515577	515577	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggttctttcggccgttcaCgtcattgtgtgcacctcagc	10	13	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	515577	515577	C	T	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	silent	c.1461	p.H487	0.734	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	258	0	0	237	45	15.9	-	-	-	T	515577	C	T	515577	2	4	708	1	0	0	0	0	0	0	0	1	11962	535	19	1		1	PIGG	4	515577	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09		515577	190638699	224	61514										
ZFYVE28	0	genome.wustl.edu	37	chr4	2306048	2306048	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agggcctgaggcgcctcgtgAgccgaggggctcccagcatg	17	13	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	2306048	2306048	A	G	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.2019	p.A673	0.001	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	19	0	0	3	6	66.67	-	-	-	G	2306048	A	G	2306048	2	3	708	1	0	0	0	0	0	0	0	1	17766	291	11	5		5	ZFYVE28	4	2306048	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1790471	2306048	188848228	225	61515										
FAM193A	0	genome.wustl.edu	37	chr4	2733551	2733551	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacaaagactgtctatcaacTggtccaattttagcttgaaa	7	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	2733551	2733551	T	C	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	missense	c.3754	p.W1252R	1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	76	0	0	61	25	29.07	-	-	-	C	2733551	T	C	2733551	3	2	708	1	0	0	0	0	1	0	0	0	5566	1580	55	5	3697	5	FAM193A	4	2733551	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	427503	2733551	188420725	226	61516										
CRMP1	0	genome.wustl.edu	37	chr4	5827261	5827261	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggtggaggtttctgatgggTgggggctggtgtttagaagg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	5827261	5827261	T	-	DEL	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	frame_shift_del	c.1929	p.I645fs	0.511	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	193	0	0	154	83	33.2	-	-	-	-	5827261	T	-	5827261	7	5	708	1	0	1	0	1	0	0	0	0	3920	1683	59	0	139	0	CRMP1	4	5827261	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	3093710	5827261	185327015	227	61517										
WFS1	0	genome.wustl.edu	37	chr4	6302783	6302783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcgtcatcttctccttccccAtcgccagcaaggactgcatc	6	17	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	6302783	6302783	A	G	SNP	WFS1	ENST00000226760	human	ensembl	69_37n	1	known	missense	c.1261	p.I421V	0.001	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501	114	0	0	101	52	33.99	-	-	-	G	6302783	A	G	6302783	3	3	708	1	0	0	0	0	1	0	0	0	17457	217	8	5	1287	5	WFS1	4	6302783	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	475522	6302783	184851493	228	61518										
MAN2B2	0	genome.wustl.edu	37	chr4	6594959	6594959	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcctccccaagatggggtgtAccccaacatgagtgagcctg	12	13	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	6594959	6594959	A	G	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	missense	c.740	p.Y247C	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	91	0	0	47	27	34.18	-	-	-	G	6594959	A	G	6594959	3	3	708	1	0	0	0	0	1	0	0	0	9288	391	14	5	762	5	MAN2B2	4	6594959	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	292176	6594959	184559317	229	61519										
LIMCH1	0	genome.wustl.edu	37	chr4	41608009	41608009	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagtttgaaggattgttggcTcagatgcgaaaggtaacttg	14	4	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	41608009	41608009	T	C	SNP	LIMCH1	ENST00000313860	human	ensembl	69_37n	1	known	silent	c.474	p.A158	0.999	superfamily_CH-domain	pfam_CH-domain,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_SM22_calponin,prints_Calponin	-	no_errors	LIMCH1	HGNC	ENSG00000064042	126	0	0	94	63	40.13	-	-	-	C	41608009	T	C	41608009	2	2	708	1	0	0	0	0	0	0	0	1	8852	1538	54	5		5	LIMCH1	4	41608009	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	35013050	41608009	149546267	230	61520										
GRXCR1	0	genome.wustl.edu	37	chr4	42895324	42895324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccagaaagtgacaggccacGgaaagtccggtttcggatcg	14	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	42895324	42895324	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	1	known	missense	c.41	p.R14Q	0.975	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	65	0	0	57	32	35.96	-	-	-	A	42895324	G	A	42895324	3	1	708	1	0	0	0	0	1	0	0	0	6863	1116	39	1	43	1	GRXCR1	4	42895324	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1287315	42895324	148258952	231	61521										
LNX1	0	genome.wustl.edu	37	chr4	54364970	54364970	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgattgatcttgatgctggtAatttcaccatctggaatcag	9	8	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	54364970	54364970	A	T	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	silent	c.816	p.I272	0.989	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	63	0	0	44	30	40.54	-	-	-	T	54364970	A	T	54364970	2	4	708	1	0	0	0	0	0	0	0	1	8921	358	13	5		5	LNX1	4	54364970	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	11469646	54364970	136789306	232	61522										
ALB	0	genome.wustl.edu	37	chr4	74285358	74285358	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacctgctttgccgaggaggTactacagttctcttcatttt	9	10	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	74285358	74285358	T	C	SNP	ALB	ENST00000295897	human	ensembl	69_37n	1	known	splice_site	c.1785+2	e13+2	0.992	-	-	-	no_errors	ALB	HGNC	ENSG00000163631	71	0	0	107	40	27.03	-	-	-	C	74285358	T	C	74285358	5	2	708	1	0	0	0	0	0	0	1	0	486	1652	57	5	1837	5	ALB	4	74285358	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	19920388	74285358	116868918	233	61523										
CCDC158	0	genome.wustl.edu	37	chr4	77305430	77305430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcactccctcatgactaagCatcatttttcgtagttgctc	6	12	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	77305430	77305430	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	missense	c.537	p.M179I	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	80	0	0	64	55	45.83	-	-	-	T	77305430	C	T	77305430	3	4	708	1	0	0	0	0	1	0	0	0	2816	710	25	4	2884	4	CCDC158	4	77305430	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	3020072	77305430	113848846	234	61524										
MMRN1	0	genome.wustl.edu	37	chr4	90816143	90816143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgaagggggcaagattattTgtccttctttctagtttatg	10	5	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	90816143	90816143	T	G	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.21	p.F7L	0.973	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	39	0	0	30	16	34.78	-	-	-	G	90816143	T	G	90816143	3	3	708	1	0	0	0	0	1	0	0	0	9742	1809	63	5	23	5	MMRN1	4	90816143	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	13510713	90816143	100338133	235	61525										
TET2	0	genome.wustl.edu	37	chr4	106196748	106196748	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagttttacatctaaatactTaggttatggaaaccaaaata	6	5	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	106196748	106196748	T	C	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.5081	p.L1694S	0.991	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	65	0	0	65	29	30.85	-	-	-	C	106196748	T	C	106196748	3	2	708	1	0	0	0	0	1	0	0	0	15865	1764	61	5	5204	5	TET2	4	106196748	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	15380605	106196748	84957528	236	61526										
PITX2	0	genome.wustl.edu	37	chr4	111542358	111542358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaggttggtccacacagcgaTttcttcgcgtgtggacatgt	12	9	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	111542358	111542358	T	C	SNP	PITX2	ENST00000306732	human	ensembl	69_37n	-1	known	missense	c.373	p.I125V	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX2	HGNC	ENSG00000164093	41	0	0	24	8	25	-	-	-	C	111542358	T	C	111542358	3	2	708	1	0	0	0	0	1	0	0	0	12029	1493	52	5	609	5	PITX2	4	111542358	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5345610	111542358	79611918	237	61527										
ANK2	0	genome.wustl.edu	37	chr4	114117624	114117624	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtggattctgccactaaggTaacatttatgttggtagaac	10	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	114117624	114117624	T	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	splice_site	c.285+2	e3+2	1.000	-	-	-	no_errors	ANK2	HGNC	ENSG00000145362	110	0	0	75	52	40.62	-	-	-	C	114117624	T	C	114117624	5	2	708	1	0	0	0	0	0	0	1	0	621	1652	57	5	322	5	ANK2	4	114117624	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2575266	114117624	77036652	238	61528										
MAD2L1	0	genome.wustl.edu	37	chr4	120983199	120983199	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaggacctcaccactttcaAtatttgagataactacaacc	4	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	120983199	120983199	A	T	SNP	MAD2L1	ENST00000296509	human	ensembl	69_37n	-1	known	missense	c.272	p.I91N	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109	196	0	0	176	49	21.78	-	-	-	T	120983199	A	T	120983199	3	4	708	1	0	0	0	0	1	0	0	0	9215	101	4	5	357	5	MAD2L1	4	120983199	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	6865575	120983199	70171077	239	61529										
ANXA5	0	genome.wustl.edu	37	chr4	122593748	122593749	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataaacttttcttcatctgtINScccccatttaagttctccag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	122593748	122593749	-	C	INS	ANXA5	ENST00000296511	human	ensembl	69_37n	-1	known	frame_shift_ins	c.565_564	p.T188fs	1.000:0.995	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinV,prints_AnnexinIV	-	no_errors	ANXA5	HGNC	ENSG00000164111	107	0	0	135	18	11.76	-	-	-	C	122593749	-	C	122593748	7	5	708	1	0	1	1	0	0	0	0	0	720	1667	58	0	417	0	ANXA5	4	122593748	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	1610549	122593748	68560528	240	61530										
FAT4	0	genome.wustl.edu	37	chr4	126328238	126328238	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcagtgatgtgaatgaccaTacacccaaattttccagacc	7	11	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	126328238	126328238	T	C	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.5511	p.H1837	0.937	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	53	0	0	39	26	40	-	-	-	C	126328238	T	C	126328238	2	2	708	1	0	0	0	0	0	0	0	1	5738	1403	49	5		5	FAT4	4	126328238	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3734490	126328238	64826038	241	61531										
NAA15	0	genome.wustl.edu	37	chr4	140265461	140265461	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgtacctatgaaaagcagaTttgtgataaacttgctgtag	9	5	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	140265461	140265461	T	A	SNP	NAA15	ENST00000296543	human	ensembl	69_37n	1	known	missense	c.659	p.I220N	1.000	pirsf_NatA_aux_su	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134	83	0	0	77	42	35.29	-	-	-	A	140265461	T	A	140265461	3	1	708	1	0	0	0	0	1	0	0	0	10190	1493	52	5	681	5	NAA15	4	140265461	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	13937223	140265461	50888815	242	61532										
SH3D19	0	genome.wustl.edu	37	chr4	152080503	152080503	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttgtggatcctcatgtaaAcctggaaaaagtagcagtaa	9	7	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	152080503	152080503	A	G	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	silent	c.804	p.C268	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	116	0	0	112	61	35.06	-	-	-	G	152080503	A	G	152080503	2	3	708	1	0	0	0	0	0	0	0	1	14337	57	2	5		5	SH3D19	4	152080503	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	11815042	152080503	39073773	243	61533										
FBXW7	0	genome.wustl.edu	37	chr4	153271249	153271249	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaagaaaaagagcggacctCagaaccatggtccaactttc	8	11	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	153271249	153271249	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.529	p.E177K	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	56	0	0	42	26	38.24	-	-	-	T	153271249	C	T	153271249	3	4	708	1	0	0	0	0	1	0	0	0	5815	835	29	2	1634	2	FBXW7	4	153271249	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1190746	153271249	37883027	244	61534										
ARFIP1	0	genome.wustl.edu	37	chr4	153802234	153802234	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaatatgaaaatattttaaaActggctcaaacattgtcgac	5	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	153802234	153802234	A	G	SNP	ARFIP1	ENST00000353617	human	ensembl	69_37n	1	known	silent	c.531	p.K177	1.000	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ARFIP1	HGNC	ENSG00000164144	50	0	0	53	7	11.67	-	-	-	G	153802234	A	G	153802234	2	3	708	1	0	0	0	0	0	0	0	1	856	40	2	5		5	ARFIP1	4	153802234	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	530985	153802234	37352042	245	61535										
KIAA0922	0	genome.wustl.edu	37	chr4	154506765	154506765	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaccaagcacatgttaaaggTacatatagtattttttcccc	6	9	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	154506765	154506765	T	C	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	splice_site	c.1311+2	e13+2	1.000	-	-	-	no_errors	KIAA0922	HGNC	ENSG00000121210	54	0	0	71	22	23.4	-	-	-	C	154506765	T	C	154506765	5	2	708	1	0	0	0	0	0	0	1	0	8253	1652	57	5	1363	5	KIAA0922	4	154506765	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	704531	154506765	36647511	246	61536										
FGG	0	genome.wustl.edu	37	chr4	155533355	155533355	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tagttggacaataactacccTgaaaatataacagtgattaa	6	6	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	155533355	155533355	T	C	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	splice_site	c.124-2	e3-2	1.000	-	-	-	no_errors	FGG	HGNC	ENSG00000171557	143	1	0.69	101	54	34.84	-	-	-	C	155533355	T	C	155533355	5	2	708	1	0	0	0	0	0	0	1	0	5916	1594	55	5	1286	5	FGG	4	155533355	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1026590	155533355	35620921	247	61537										
CLCN3	0	genome.wustl.edu	37	chr4	170634376	170634376	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttttacagtgacagaccacAccccaatggagatcgtggtg	10	11	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	170634376	170634376	A	G	SNP	CLCN3	ENST00000347613	human	ensembl	69_37n	1	known	missense	c.2296	p.T766A	1.000	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572	77	0	0	46	27	36.49	-	-	-	G	170634376	A	G	170634376	3	3	708	1	0	0	0	0	1	0	0	0	3494	159	6	5	2338	5	CLCN3	4	170634376	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	15101021	170634376	20519900	248	61538										
C4orf27	0	genome.wustl.edu	37	chr4	170674878	170674878	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaacttccagaagtgatagaAatcttcaggtaaagaaagct	9	6	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	4	170674878	170674878	A	T	SNP	C4orf27	ENST00000393381	human	ensembl	69_37n	-1	known	missense	c.157	p.F53I	1.000	NULL	pfam_DUF2228_C2H2_APLF-like	-	no_errors	C4orf27	HGNC	ENSG00000056050	80	0	0	60	31	34.07	-	-	-	T	170674878	A	T	170674878	3	4	708	1	0	0	0	0	1	0	0	0	2279	14	1	5	911	5	C4orf27	4	170674878	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	40502	170674878	20479398	249	61539										
ADCY2	0	genome.wustl.edu	37	chr5	7414819	7414819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttctcgttggtgatatggaTatgccttgttgccatgggat	12	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	7414819	7414819	T	C	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	missense	c.344	p.I115T	0.863	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	279	0	0	307	116	27.42	-	-	-	C	7414819	T	C	7414819	3	2	708	1	0	0	0	0	1	0	0	0	294	1406	49	5	350	5	ADCY2	5	7414819	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09		7414819	173500441	250	61540										
RAI14	0	genome.wustl.edu	37	chr5	34826493	34826493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggccttgaacagcctctcccAgctctcctactcaacaagct	6	17	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	34826493	34826493	A	G	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	1	known	missense	c.2717	p.Q906R	1.000	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	58	0	0	75	18	19.35	-	-	-	G	34826493	A	G	34826493	3	3	708	1	0	0	0	0	1	0	0	0	13091	188	7	5	2831	5	RAI14	5	34826493	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	27411674	34826493	146088767	251	61541										
C7	0	genome.wustl.edu	37	chr5	40947909	40947909	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttaggaggagaatacagagTtctattttatgtggactcag	12	4	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	40947909	40947909	T	C	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.944	p.V315A	0.995	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	38	0	0	65	18	21.69	-	-	-	C	40947909	T	C	40947909	3	2	708	1	0	0	0	0	1	0	0	0	2398	1725	60	5	974	5	C7	5	40947909	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6121416	40947909	139967351	252	61542										
SLC38A9	0	genome.wustl.edu	37	chr5	54948414	54948414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaaattgagcagtgggaggaGgagccctacaagataaaagg	15	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	54948414	54948414	G	A	SNP	SLC38A9	ENST00000318672	human	ensembl	69_37n	-1	known	missense	c.895	p.L299F	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	49	0	0	39	24	38.1	-	-	-	A	54948414	G	A	54948414	3	1	708	1	0	0	0	0	1	0	0	0	14700	1000	35	4	818	4	SLC38A9	5	54948414	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	14000505	54948414	125966846	253	61543										
RGS7BP	0	genome.wustl.edu	37	chr5	63894218	63894218	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagagaaatgaaaaacctttTaagcaaactcagggaaacta	8	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	63894218	63894218	T	A	SNP	RGS7BP	ENST00000334025	human	ensembl	69_37n	1	known	nonsense	c.638	p.L213*	1.000	NULL	NULL	-	no_errors	RGS7BP	HGNC	ENSG00000186479	77	0	0	50	37	42.53	-	-	-	A	63894218	T	A	63894218	4	1	708	1	0	0	0	0	0	1	0	0	13395	1764	61	5	656	5	RGS7BP	5	63894218	Nonsense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8945804	63894218	117021042	254	61544										
PIK3R1	0	genome.wustl.edu	37	chr5	67592114	67592114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgttgcgagggaagcgagatGgcacttttcttgtccgggag	16	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	67592114	67592114	G	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1954	p.G652C	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	109	0	0	82	34	29.31	-	-	-	T	67592114	G	T	67592114	3	4	708	1	0	0	0	0	1	0	0	0	11992	1348	47	4	2114	4	PIK3R1	5	67592114	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3697896	67592114	113323146	255	61545										
PIK3R1	0	genome.wustl.edu	37	chr5	67593261	67593261	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtggacggcgaagtaaagcaTtgtgtcataaacaaaacagc	11	7	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	67593261	67593261	T	A	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.2031	p.H677Q	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	90	0	0	104	50	32.47	-	-	-	A	67593261	T	A	67593261	3	1	708	1	0	0	0	0	1	0	0	0	11992	1490	52	5	2195	5	PIK3R1	5	67593261	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1147	67593261	113321999	256	61546										
APC	0	genome.wustl.edu	37	chr5	112179043	112179043	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcagaatccagtgaaaaagcAaaaagtgaggatgaaaaaca							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	112179043	112179043	A	-	DEL	APC	ENST00000257430	human	ensembl	69_37n	1	known	frame_shift_del	c.7752	p.S2586fs	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	33	0	0	30	15	31.25	-	-	-	-	112179043	A	-	112179043	7	5	708	1	0	1	0	1	0	0	0	0	764	117	5	0	7810	0	APC	5	112179043	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	44585782	112179043	68736217	257	61547										
ACSL6	0	genome.wustl.edu	37	chr5	131323822	131323822	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttcgaatgggtccatgagGatgatcagcttgaggcctgg	14	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	131323822	131323822	G	T	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	silent	c.750	p.I250	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	148	1	0.67	111	48	30.19	-	-	-	T	131323822	G	T	131323822	2	4	708	1	0	0	0	0	0	0	0	1	181	1164	41	2		2	ACSL6	5	131323822	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	19144779	131323822	49591438	258	61548										
GDF9	0	genome.wustl.edu	37	chr5	132198070	132198070	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaggtaaatgagtatggagcTctgccgagagtcctgctaga	13	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	132198070	132198070	T	A	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.576	p.R192S	0.000	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	58	0	0	61	53	46.49	-	-	-	A	132198070	T	A	132198070	3	1	708	1	0	0	0	0	1	0	0	0	6371	1548	54	5	792	5	GDF9	5	132198070	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	874248	132198070	48717190	259	61549										
GDF9	0	genome.wustl.edu	37	chr5	132199940	132199940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatcccttccttggtagcatAtgtcttatagagcttcttca	6	10	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	132199940	132199940	A	G	SNP	GDF9	ENST00000296875	human	ensembl	69_37n	-1	known	missense	c.286	p.Y96H	0.265	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404	87	0	0	59	47	44.34	-	-	-	G	132199940	A	G	132199940	3	3	708	1	0	0	0	0	1	0	0	0	6371	449	16	5	1086	5	GDF9	5	132199940	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1870	132199940	48715320	260	61550										
CATSPER3	0	genome.wustl.edu	37	chr5	134347285	134347285	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgccccaggagaagccccAgtccttggaaaaggtggatg	13	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	134347285	134347285	A	G	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	1	known	missense	c.1169	p.Q390R	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	78	0	0	44	38	46.34	-	-	-	G	134347285	A	G	134347285	3	3	708	1	0	0	0	0	1	0	0	0	2714	188	7	5	1199	5	CATSPER3	5	134347285	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2147345	134347285	46567975	261	61551										
TGFBI	0	genome.wustl.edu	37	chr5	135382083	135382083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttggatccaccaccactcagCtgtacacggaccgcacggag	10	15	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	135382083	135382083	C	A	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	1	known	missense	c.358	p.L120M	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,superfamily_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	36	0	0	23	14	37.84	-	-	-	A	135382083	C	A	135382083	3	1	708	1	0	0	0	0	1	0	0	0	15915	796	28	4	372	4	TGFBI	5	135382083	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1034798	135382083	45533177	262	61552										
MYOT	0	genome.wustl.edu	37	chr5	137219153	137219153	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgatttgcacaaaatgatAgtgtctgagaagggtcttca	11	5	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	137219153	137219153	A	G	SNP	MYOT	ENST00000239926	human	ensembl	69_37n	1	known	missense	c.897	p.I299M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYOT	HGNC	ENSG00000120729	99	0	0	103	58	36.02	-	-	-	G	137219153	A	G	137219153	3	3	708	1	0	0	0	0	1	0	0	0	10166	410	15	5	919	5	MYOT	5	137219153	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1837070	137219153	43696107	263	61553										
FAM13B	0	genome.wustl.edu	37	chr5	137347505	137347505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaaagaatttgcggaccaaAtttcttcatgatgtgatgct	8	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	137347505	137347505	A	G	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.500	p.I167T	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	48	0	0	44	30	40.54	-	-	-	G	137347505	A	G	137347505	3	3	708	1	0	0	0	0	1	0	0	0	5493	101	4	5	2393	5	FAM13B	5	137347505	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	128352	137347505	43567755	264	61554										
EGR1	0	genome.wustl.edu	37	chr5	137803283	137803283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caacttcagccgcagcgaccAcctcaccacccacatccgca	5	21	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	137803283	137803283	A	G	SNP	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	missense	c.1145	p.H382R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	73	0	0	47	20	29.41	-	-	-	G	137803283	A	G	137803283	3	3	708	1	0	0	0	0	1	0	0	0	5006	159	6	5	1151	5	EGR1	5	137803283	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	455778	137803283	43111977	265	61555										
PCDHA7	0	genome.wustl.edu	37	chr5	140214295	140214295	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcatccacctggaggtgatCgtggaaaggccgctgcaggt	15	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140214295	140214295	C	G	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	missense	c.327	p.I109M	0.891	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	92	0	0	116	18	13.43	-	-	-	G	140214295	C	G	140214295	3	3	708	1	0	0	0	0	1	0	0	0	11602	874	31	3	329	3	PCDHA7	5	140214295	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2411012	140214295	40700965	266	61556										
PCDHA7	0	genome.wustl.edu	37	chr5	140215804	140215804	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggctttcgtatgagttgcaAccggtggcggccggtgcgag	17	9	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140215804	140215804	A	G	SNP	PCDHA7	ENST00000525929	human	ensembl	69_37n	1	known	silent	c.1836	p.Q612	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	91	0	0	76	13	14.44	-	-	-	G	140215804	A	G	140215804	2	3	708	1	0	0	0	0	0	0	0	1	11602	40	2	5		5	PCDHA7	5	140215804	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1509	140215804	40699456	267	61557										
PCDHA10	0	genome.wustl.edu	37	chr5	140236696	140236696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggtgattgtcacttctctgTctctcccagtgaaagaagat	9	9	3	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140236696	140236696	T	C	SNP	PCDHA10	ENST00000307360	human	ensembl	69_37n	1	known	missense	c.1063	p.S355P	0.003	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	91	0	0	91	26	22.03	-	-	-	C	140236696	T	C	140236696	3	2	708	1	0	0	0	0	1	0	0	0	11593	1667	58	5	1065	5	PCDHA10	5	140236696	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	20892	140236696	40678564	268	61558										
PCDHB6	0	genome.wustl.edu	37	chr5	140531205	140531205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacccaaacctcctacacccTgttcgtccgcgagaacaaca	5	18	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140531205	140531205	T	C	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.1367	p.L456P	0.003	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	76	0	0	63	14	17.95	-	-	-	C	140531205	T	C	140531205	3	2	708	1	0	0	0	0	1	0	0	0	11619	1580	55	5	1369	5	PCDHB6	5	140531205	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	294509	140531205	40384055	269	61559										
PCDHGA7	0	genome.wustl.edu	37	chr5	140763960	140763960	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccgaagacaccatccagggGgctccagtgtcctcctatgt	11	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140763960	140763960	G	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	silent	c.1494	p.G498	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	42	0	0	53	15	22.06	-	-	-	T	140763960	G	T	140763960	2	4	708	1	0	0	0	0	0	0	0	1	11632	1219	43	4		4	PCDHGA7	5	140763960	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	232755	140763960	40151300	270	61560										
PCDHGC5	0	genome.wustl.edu	37	chr5	140869786	140869786	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caagagcccgtgaccagggaCagcctgccatggagggccac	14	14	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	140869786	140869786	C	G	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	missense	c.979	p.Q327E	0.348	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	62	0	0	89	11	11	-	-	-	G	140869786	C	G	140869786	3	3	708	1	0	0	0	0	1	0	0	0	11644	479	17	4	981	4	PCDHGC5	5	140869786	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	105826	140869786	40045474	271	61561										
KIAA0141	0	genome.wustl.edu	37	chr5	141309266	141309266	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cccggaacttctcacacaacTctttgagaggagctcgtcct	8	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	141309266	141309266	T	A	SNP	KIAA0141	ENST00000194118	human	ensembl	69_37n	1	known	missense	c.532	p.S178T	0.861	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791	39	0	0	49	8	14.04	-	-	-	A	141309266	T	A	141309266	3	1	708	1	0	0	0	0	1	0	0	0	8208	1551	54	5	550	5	KIAA0141	5	141309266	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	439480	141309266	39605994	272	61562										
TCERG1	0	genome.wustl.edu	37	chr5	145838842	145838842	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acttcaacatcatcatccacCccttcctctaccacttctac	0	19	5	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	145838842	145838842	C	A	SNP	TCERG1	ENST00000296702	human	ensembl	69_37n	1	known	silent	c.834	p.T278	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1	HGNC	ENSG00000113649	95	0	0	84	23	21.5	-	-	-	A	145838842	C	A	145838842	2	1	708	1	0	0	0	0	0	0	0	1	15780	610	22	4		4	TCERG1	5	145838842	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	4529576	145838842	35076418	273	61563										
RBM22	0	genome.wustl.edu	37	chr5	150075198	150075198	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgtcagctacaggatcatTgattccgtaataacggtctt	8	9	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	150075198	150075198	T	C	SNP	RBM22	ENST00000199814	human	ensembl	69_37n	-1	known	missense	c.616	p.N206D	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589	77	0	0	52	35	40.23	-	-	-	C	150075198	T	C	150075198	3	2	708	1	0	0	0	0	1	0	0	0	13205	1812	63	5	666	5	RBM22	5	150075198	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4236356	150075198	30840062	274	61564										
FAT2	0	genome.wustl.edu	37	chr5	150901548	150901548	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctctccaacagtgatgaagaTctccagtgggagagcagaag	12	9	2	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	150901548	150901548	T	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.10606	p.I3536L	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	37	0	0	14	29	67.44	-	-	-	G	150901548	T	G	150901548	3	3	708	1	0	0	0	0	1	0	0	0	5736	1435	50	5	2467	5	FAT2	5	150901548	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	826350	150901548	30013712	275	61565										
CNOT8	0	genome.wustl.edu	37	chr5	154244839	154244839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcagcttctgcggtgcaatGttgaccttttaaaaattatc	7	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	154244839	154244839	G	A	SNP	CNOT8	ENST00000285896	human	ensembl	69_37n	1	known	missense	c.205	p.V69I	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508	103	0	0	64	50	43.86	-	-	-	A	154244839	G	A	154244839	3	1	708	1	0	0	0	0	1	0	0	0	3655	1377	48	4	211	4	CNOT8	5	154244839	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3343291	154244839	26670421	276	61566										
SH3PXD2B	0	genome.wustl.edu	37	chr5	171809077	171809077	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcctcaggtcttgtctcaaAgaactgcagcacctcatcac	7	14	5	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	171809077	171809077	A	G	SNP	SH3PXD2B	ENST00000311601	human	ensembl	69_37n	-1	known	missense	c.364	p.F122L	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	33	0	0	41	13	24.07	-	-	-	G	171809077	A	G	171809077	3	3	708	1	0	0	0	0	1	0	0	0	14346	72	3	5	2407	5	SH3PXD2B	5	171809077	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	17564238	171809077	9106183	277	61567										
DRD1	0	genome.wustl.edu	37	chr5	174869489	174869489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caatcatgatggccacagggAtgtaaaagcttattacagag	10	7	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	174869489	174869489	A	G	SNP	DRD1	ENST00000329144	human	ensembl	69_37n	-1	known	missense	c.614	p.I205T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt,prints_Adrnrgc_rcpt	-	no_errors	DRD1	HGNC	ENSG00000184845	91	0	0	123	21	14.58	-	-	-	G	174869489	A	G	174869489	3	3	708	1	0	0	0	0	1	0	0	0	4791	333	12	5	730	5	DRD1	5	174869489	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3060412	174869489	6045771	278	61568										
KIAA1191	0	genome.wustl.edu	37	chr5	175782704	175782704	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agctgactgcccggcggtatAtcccgatgggcagggacatc	14	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	175782704	175782704	A	G	SNP	KIAA1191	ENST00000298569	human	ensembl	69_37n	-1	known	missense	c.77	p.I26T	1.000	NULL	NULL	-	no_errors	KIAA1191	HGNC	ENSG00000122203	18	0	0	17	11	39.29	-	-	-	G	175782704	A	G	175782704	3	3	708	1	0	0	0	0	1	0	0	0	8264	449	16	5	864	5	KIAA1191	5	175782704	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	913215	175782704	5132556	279	61569										
NSD1	0	genome.wustl.edu	37	chr5	176719060	176719060	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggagcgagaagatgagtgtTttagttgtggggatgctggc	18	3	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	176719060	176719060	T	G	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.6364	p.F2122V	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	61	0	0	77	34	30.63	-	-	-	G	176719060	T	G	176719060	3	3	708	1	0	0	0	0	1	0	0	0	10742	1841	64	5	6446	5	NSD1	5	176719060	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	936356	176719060	4196200	280	61570										
NSD1	0	genome.wustl.edu	37	chr5	176719136	176719136	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtttaccacgcagactgtcTcaatctgaccaagcgaccag	8	13	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	176719136	176719136	T	G	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.6440	p.L2147R	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	62	0	0	54	21	28	-	-	-	G	176719136	T	G	176719136	3	3	708	1	0	0	0	0	1	0	0	0	10742	1551	54	5	6522	5	NSD1	5	176719136	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	76	176719136	4196124	281	61571										
DDX41	0	genome.wustl.edu	37	chr5	176939145	176939145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcaatgcagcacctgcagcaCgggcggcaccttctgcttgg	13	14	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	176939145	176939145	C	T	SNP	DDX41	ENST00000507955	human	ensembl	69_37n	-1	known	missense	c.1684	p.V562M	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	33	0	0	33	19	36.54	-	-	-	T	176939145	C	T	176939145	3	4	708	1	0	0	0	0	1	0	0	0	4392	536	19	1	192	1	DDX41	5	176939145	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	220009	176939145	3976115	282	61572										
FAM193B	0	genome.wustl.edu	37	chr5	176959539	176959539	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcaggagcttcgctcagagcTgctatcctcttcctcaccca	8	16	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	176959539	176959539	T	G	SNP	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	missense	c.841	p.S281R	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	17	0	0	24	9	27.27	-	-	-	G	176959539	T	G	176959539	3	3	708	1	0	0	0	0	1	0	0	0	5567	1580	55	5	1548	5	FAM193B	5	176959539	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	20394	176959539	3955721	283	61573										
RMND5B	0	genome.wustl.edu	37	chr5	177574760	177574760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aactaggcatgaagtgctggTaccactccgtgttcgcttgc	11	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	177574760	177574760	T	C	SNP	RMND5B	ENST00000313386	human	ensembl	69_37n	1	known	missense	c.994	p.Y332H	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5B	HGNC	ENSG00000145916	104	0	0	175	29	14.22	-	-	-	C	177574760	T	C	177574760	3	2	708	1	0	0	0	0	1	0	0	0	13484	1638	57	5	1024	5	RMND5B	5	177574760	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	615221	177574760	3340500	284	61574										
GFPT2	0	genome.wustl.edu	37	chr5	179729575	179729576	+	Frame_Shift_Ins	INS	-	-	G													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccttggagcacagtataatINSggggcgaccctagagcagag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	5	179729575	179729576	-	G	INS	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1852_1851	p.I617fs	0.994:0.007	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	88	0	0	142	19	11.8	-	-	-	G	179729576	-	G	179729575	7	5	708	1	0	1	1	0	0	0	0	0	6398	1464	51	0	204	0	GFPT2	5	179729575	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	2154815	179729575	1185685	285	61575										
F13A1	0	genome.wustl.edu	37	chr6	6251074	6251074	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctccagcttctggtcttgatGtcattgacctctccataaaa	6	12	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	6251074	6251074	G	A	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	silent	c.660	p.D220	0.962	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	121	0	0	106	65	38.01	-	-	-	A	6251074	G	A	6251074	2	1	708	1	0	0	0	0	0	0	0	1	5377	1368	48	4		4	F13A1	6	6251074	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		6251074	164863993	286	61576										
SLC35B3	0	genome.wustl.edu	37	chr6	8417714	8417714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtatacaaaaccaattgaaTacgaatacaatacctagagc	5	8	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	8417714	8417714	T	C	SNP	SLC35B3	ENST00000379660	human	ensembl	69_37n	-1	known	missense	c.794	p.Y265C	1.000	pfam_UAA	pfam_UAA	-	no_errors	SLC35B3	HGNC	ENSG00000124786	58	0	0	97	33	25.38	-	-	-	C	8417714	T	C	8417714	3	2	708	1	0	0	0	0	1	0	0	0	14666	1406	49	5	427	5	SLC35B3	6	8417714	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2166640	8417714	162697353	287	61577										
LRRC16A	0	genome.wustl.edu	37	chr6	25510790	25510790	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcagtaaaaacagatcaatAcaacacctggcgttaggcaa	7	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	25510790	25510790	A	G	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.1533	p.I511M	0.984	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	146	0	0	187	40	17.62	-	-	-	G	25510790	A	G	25510790	3	3	708	1	0	0	0	0	1	0	0	0	9037	381	14	5	1607	5	LRRC16A	6	25510790	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	17093076	25510790	145604277	288	61578										
OR2B2	0	genome.wustl.edu	37	chr6	27879599	27879599	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttctttgtgaccacacagtgGcatcttaagtgtccaggtgg	11	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	27879599	27879599	G	C	SNP	OR2B2	ENST00000303324	human	ensembl	69_37n	-1	known	missense	c.499	p.P167A	0.046	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131	41	0	0	61	36	37.11	-	-	-	C	27879599	G	C	27879599	3	2	708	1	0	0	0	0	1	0	0	0	11062	1203	42	4	578	4	OR2B2	6	27879599	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2368809	27879599	143235468	289	61579										
MAS1L	0	genome.wustl.edu	37	chr6	29454984	29454984	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcacaagtgaaaggatagcAtggaagagcccagaaagctt	11	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	29454984	29454984	A	G	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	silent	c.696	p.H232	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	13	0	0	24	7	22.58	-	-	-	G	29454984	A	G	29454984	2	3	708	1	0	0	0	0	0	0	0	1	9392	214	8	5		5	MAS1L	6	29454984	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1575385	29454984	141660083	290	61580										
HLA-C	0	genome.wustl.edu	37	chr6	31239109	31239109	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggtcgcagccagacatcctCtggagggtgtgagaccctgg	15	11	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	31239109	31239109	C	A	SNP	HLA-C	ENST00000415537	human	ensembl	69_37n	-1	novel	nonsense	c.358	p.E120*	0.749	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-C	HGNC	ENSG00000204525	9	0	0	1	4	80	-	-	-	A	31239109	C	A	31239109	4	1	708	1	0	0	0	0	0	1	0	0	7248	912	32	2	764	2	HLA-C	6	31239109	Nonsense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1784125	31239109	139875958	291	61581										
TNXB	0	genome.wustl.edu	37	chr6	32010078	32010078	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagagatgttcccaaaaccaTgggcatagtcctcccagtcc	8	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	32010078	32010078	T	C	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.12266	p.H4089R	0.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	46	0	0	41	15	26.79	-	-	-	C	32010078	T	C	32010078	3	2	708	1	0	0	0	0	1	0	0	0	16441	1464	51	5	2463	5	TNXB	6	32010078	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	770969	32010078	139104989	292	61582										
TNXB	0	genome.wustl.edu	37	chr6	32064693	32064693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccccgctggctgcagccccGagggcagctcctcaccccac	10	21	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	32064693	32064693	G	A	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.937	p.R313W	0.771	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	55	0	0	39	30	43.48	-	-	-	A	32064693	G	A	32064693	3	1	708	1	0	0	0	0	1	0	0	0	16441	1057	37	1	13944	1	TNXB	6	32064693	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	54615	32064693	139050374	293	61583										
FKBPL	0	genome.wustl.edu	37	chr6	32097316	32097316	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcatctgactggttgatccaTgagacttatgagagtctcct	10	9	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	32097316	32097316	T	A	SNP	FKBPL	ENST00000375156	human	ensembl	69_37n	-1	known	missense	c.242	p.H81L	0.019	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FKBPL	HGNC	ENSG00000204315	108	0	0	173	21	10.82	-	-	-	A	32097316	T	A	32097316	3	1	708	1	0	0	0	0	1	0	0	0	5962	1464	51	5	811	5	FKBPL	6	32097316	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	32623	32097316	139017751	294	61584										
RPS18	0	genome.wustl.edu	37	chr6	33244011	33244011	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctggagcgactgaagaagaTtcgggcccatagagggctgc	15	10	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	33244011	33244011	T	A	SNP	RPS18	ENST00000439602	human	ensembl	69_37n	1	known	missense	c.350	p.I117N	1.000	pfam_Ribosomal_S13,superfamily_Ribosomal_S13-like_H2TH,pirsf_Ribosomal_S13,pfscan_Ribosomal_S13	pfam_Ribosomal_S13,superfamily_Ribosomal_S13-like_H2TH,pirsf_Ribosomal_S13,pfscan_Ribosomal_S13	-	no_errors	RPS18	HGNC	ENSG00000231500	31	0	0	53	10	15.87	-	-	-	A	33244011	T	A	33244011	3	1	708	1	0	0	0	0	1	0	0	0	13714	1493	52	5	368	5	RPS18	6	33244011	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1146695	33244011	137871056	295	61585										
LHFPL5	0	genome.wustl.edu	37	chr6	35773537	35773537	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccgtgggcgtgatgtggggTaccctcaccatctgcttctc	13	13	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	35773537	35773537	T	C	SNP	LHFPL5	ENST00000360215	human	ensembl	69_37n	1	known	silent	c.90	p.G30	0.960	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL5	HGNC	ENSG00000197753	115	0	0	132	24	15	-	-	-	C	35773537	T	C	35773537	2	2	708	1	0	0	0	0	0	0	0	1	8823	1625	57	5		5	LHFPL5	6	35773537	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2529526	35773537	135341530	296	61586										
ETV7	0	genome.wustl.edu	37	chr6	36336758	36336758	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttggatccacaactcggaagAtcttggcgtccttgtcttcc	9	12	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	36336758	36336758	A	G	SNP	ETV7	ENST00000340181	human	ensembl	69_37n	-1	known	missense	c.755	p.I252T	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV7	HGNC	ENSG00000010030	120	0	0	152	23	13.14	-	-	-	G	36336758	A	G	36336758	3	3	708	1	0	0	0	0	1	0	0	0	5321	333	12	5	282	5	ETV7	6	36336758	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	563221	36336758	134778309	297	61587										
BTBD9	0	genome.wustl.edu	37	chr6	38562052	38562052	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctgcagtggtgtcttggagAggaatttctgcttcaggctg	14	7	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	38562052	38562052	A	G	SNP	BTBD9	ENST00000403056	human	ensembl	69_37n	-1	known	silent	c.237	p.P79	0.977	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826	54	0	0	87	24	21.62	-	-	-	G	38562052	A	G	38562052	2	3	708	1	0	0	0	0	0	0	0	1	1557	291	11	5		5	BTBD9	6	38562052	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2225294	38562052	132553015	298	61588										
DNAH8	0	genome.wustl.edu	37	chr6	38893841	38893841	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgttgttcagattggtgagtGggggctacagggattaccag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	38893841	38893841	G	-	DEL	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	frame_shift_del	c.10322	p.L3443fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	65	0	0	73	48	39.34	-	-	-	-	38893841	G	-	38893841	7	5	708	1	0	1	0	1	0	0	0	0	4642	1357	47	0	10600	0	DNAH8	6	38893841	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	331789	38893841	132221226	299	61589										
KIF6	0	genome.wustl.edu	37	chr6	39563938	39563938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagccaggtcaaccagatgGagtttggcatgtcgtacagt	12	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	39563938	39563938	G	T	SNP	KIF6	ENST00000458470	human	ensembl	69_37n	-1	known	missense	c.413	p.S138Y	0.932	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIF6	HGNC	ENSG00000164627	92	0	0	133	29	17.79	-	-	-	T	39563938	G	T	39563938	3	4	708	1	0	0	0	0	1	0	0	0	8360	1161	41	2	1774	2	KIF6	6	39563938	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	670097	39563938	131551129	300	61590										
PTCRA	0	genome.wustl.edu	37	chr6	42890941	42890941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgccttcacctatggccctTccccagcaacggatggcacc	8	17	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	42890941	42890941	T	C	SNP	PTCRA	ENST00000304672	human	ensembl	69_37n	1	known	missense	c.235	p.S79P	0.077	NULL	NULL	-	no_errors	PTCRA	HGNC	ENSG00000171611	74	0	0	140	25	15.15	-	-	-	C	42890941	T	C	42890941	3	2	708	1	0	0	0	0	1	0	0	0	12815	1783	62	5	241	5	PTCRA	6	42890941	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3327003	42890941	128224126	301	61591										
PEX6	0	genome.wustl.edu	37	chr6	42934554	42934554	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctggtgcaggctgcccggcTgctgtgggtcagaagggcat	17	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	42934554	42934554	T	G	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.1927	p.S643R	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	70	0	0	61	35	36.46	-	-	-	G	42934554	T	G	42934554	3	3	708	1	0	0	0	0	1	0	0	0	11824	1580	55	5	1051	5	PEX6	6	42934554	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	43613	42934554	128180513	302	61592										
CUL7	0	genome.wustl.edu	37	chr6	43018852	43018852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataggtattgccacttgcgaActcagaacgagggcgaaaac	11	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	43018852	43018852	A	G	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	missense	c.1339	p.F447L	1.000	pfam_CPH_domain	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	77	0	0	85	13	13.27	-	-	-	G	43018852	A	G	43018852	3	3	708	1	0	0	0	0	1	0	0	0	4091	43	2	5	4101	5	CUL7	6	43018852	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	84298	43018852	128096215	303	61593										
TJAP1	0	genome.wustl.edu	37	chr6	43473343	43473343	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcttttgctacccacagaacCtgactctggctttcccaggg	9	14	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	43473343	43473343	C	A	SNP	TJAP1	ENST00000372445	human	ensembl	69_37n	1	known	missense	c.1424	p.P475H	0.016	NULL	NULL	-	no_errors	TJAP1	HGNC	ENSG00000137221	17	0	0	14	7	33.33	-	-	-	A	43473343	C	A	43473343	3	1	708	1	0	0	0	0	1	0	0	0	16023	681	24	4	1454	4	TJAP1	6	43473343	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	454491	43473343	127641724	304	61594										
POLH	0	genome.wustl.edu	37	chr6	43581864	43581864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaactctttaccaacagagtAtccagggtgtgtccctgttt	8	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	43581864	43581864	A	G	SNP	POLH	ENST00000372236	human	ensembl	69_37n	1	known	missense	c.1712	p.Y571C	0.000	pirsf_DNA_pol_eta	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734	72	0	0	64	50	43.86	-	-	-	G	43581864	A	G	43581864	3	3	708	1	0	0	0	0	1	0	0	0	12276	449	16	5	1750	5	POLH	6	43581864	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	108521	43581864	127533203	305	61595										
CYP39A1	0	genome.wustl.edu	37	chr6	46563859	46563859	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actttaatcttatctttgccTgtaaaaaaatttttaatgag	4	5	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	46563859	46563859	T	C	SNP	CYP39A1	ENST00000275016	human	ensembl	69_37n	-1	known	splice_site	c.932-2	e8-2	1.000	-	-	-	no_errors	CYP39A1	HGNC	ENSG00000146233	81	0	0	81	52	39.1	-	-	-	C	46563859	T	C	46563859	5	2	708	1	0	0	0	0	0	0	1	0	4208	1594	55	5	499	5	CYP39A1	6	46563859	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2981995	46563859	124551208	306	61596										
MEP1A	0	genome.wustl.edu	37	chr6	46793031	46793031	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taccagcacaactttgacacCtatgatgatagcttaatcac	5	11	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	46793031	46793031	C	A	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	silent	c.579	p.T193	0.998	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	66	0	0	70	52	42.62	-	-	-	A	46793031	C	A	46793031	2	1	708	1	0	0	0	0	0	0	0	1	9546	668	24	4		4	MEP1A	6	46793031	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	229172	46793031	124322036	307	61597										
MEP1A	0	genome.wustl.edu	37	chr6	46802999	46802999	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctgaagatatcacccacctCagccagactgaagttcccac	6	16	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	46802999	46802999	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	silent	c.1797	p.L599	0.011	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	24	0	0	23	15	39.47	-	-	-	T	46802999	C	T	46802999	2	4	708	1	0	0	0	0	0	0	0	1	9546	813	29	2		2	MEP1A	6	46802999	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	9968	46802999	124312068	308	61598										
IL17F	0	genome.wustl.edu	37	chr6	52103684	52103684	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagtatgtcctactttggggAttttccgagctgccgcctca	10	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	52103684	52103684	A	G	SNP	IL17F	ENST00000336123	human	ensembl	69_37n	-1	known	missense	c.98	p.I33T	0.000	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17F	HGNC	ENSG00000112116	60	0	0	80	11	12.09	-	-	-	G	52103684	A	G	52103684	3	3	708	1	0	0	0	0	1	0	0	0	7692	333	12	5	401	5	IL17F	6	52103684	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5300685	52103684	119011383	309	61599										
ELOVL5	0	genome.wustl.edu	37	chr6	53156753	53156753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagaagaaaccatccttttaCtctagtatctgaaaaattaa	4	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	53156753	53156753	C	T	SNP	ELOVL5	ENST00000541407	human	ensembl	69_37n	-1	known	missense	c.67	p.V23I	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660	58	0	0	53	45	45.45	-	-	-	T	53156753	C	T	53156753	3	4	708	1	0	0	0	0	1	0	0	0	5114	565	20	4	856	4	ELOVL5	6	53156753	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1053069	53156753	117958314	310	61600										
GFRAL	0	genome.wustl.edu	37	chr6	55264205	55264205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccatgtgcatgacagtcaccTgtggaatccttctgttggtt	10	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	55264205	55264205	T	C	SNP	GFRAL	ENST00000340465	human	ensembl	69_37n	1	known	missense	c.1087	p.C363R	0.976	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871	74	0	0	71	44	38.26	-	-	-	C	55264205	T	C	55264205	3	2	708	1	0	0	0	0	1	0	0	0	6403	1580	55	5	1117	5	GFRAL	6	55264205	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2107452	55264205	115850862	311	61601										
BEND6	0	genome.wustl.edu	37	chr6	56879963	56879963	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagtcacccagtttgaagaaTtggttggtatggccgaggct	13	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	56879963	56879963	T	A	SNP	BEND6	ENST00000370746	human	ensembl	69_37n	1	known	missense	c.331	p.L111M	0.927	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917	111	0	0	113	89	44.06	-	-	-	A	56879963	T	A	56879963	3	1	708	1	0	0	0	0	1	0	0	0	1406	1490	52	5	341	5	BEND6	6	56879963	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1615758	56879963	114235104	312	61602										
COL9A1	0	genome.wustl.edu	37	chr6	70935663	70935663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctatagctccaggcaaaccGttgggacctcttcctggagg	11	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	70935663	70935663	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	silent	c.2553	p.N851	0.998	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	60	0	0	39	42	51.85	-	-	-	A	70935663	G	A	70935663	2	1	708	1	0	0	0	0	0	0	0	1	3737	1136	40	1		1	COL9A1	6	70935663	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	14055700	70935663	100179404	313	61603										
EEF1A1	0	genome.wustl.edu	37	chr6	74228713	74228713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagaaattggcacaaatgctActgtgtcggggttgtagcca	12	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	74228713	74228713	A	G	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.563	p.V188A	1.000	pfam_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	64	0	0	93	66	41.51	-	-	-	G	74228713	A	G	74228713	3	3	708	1	0	0	0	0	1	0	0	0	4958	391	14	5	845	5	EEF1A1	6	74228713	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3293050	74228713	96886354	314	61604										
LCA5	0	genome.wustl.edu	37	chr6	80228535	80228535	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagactgtggcgtttcaaaaTcagataagtaagaataatgg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	80228535	80228535	T	-	DEL	LCA5	ENST00000369846	human	ensembl	69_37n	-1	known	frame_shift_del	c.77	p.D26fs	0.983	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338	91	0	0	234	61	16.09	-	-	-	-	80228535	T	-	80228535	7	5	708	1	0	1	0	1	0	0	0	0	8710	1435	50	0	2044	0	LCA5	6	80228535	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	5999822	80228535	90886532	315	61605										
SYNCRIP	0	genome.wustl.edu	37	chr6	86351110	86351110	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggataactgcagaagtagtAtccatgggctcttcagtacc	10	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	86351110	86351110	A	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	missense	c.48	p.D16E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	102	0	0	142	61	29.9	-	-	-	T	86351110	A	T	86351110	3	4	708	1	0	0	0	0	1	0	0	0	15536	446	16	5	1909	5	SYNCRIP	6	86351110	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	6122575	86351110	84763957	316	61606										
AKD1	0	genome.wustl.edu	37	chr6	109827679	109827679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gataatattgcctaatctcaCcaatatttttgcgatacttt	4	8	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	109827679	109827679	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.4700	p.G1567D	0.000	pfam_Adenylate_kin,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	150	0	0	126	95	42.79	-	-	-	T	109827679	C	T	109827679	3	4	708	1	0	0	0	0	1	0	0	0	460	507	18	4	1063	4	AKD1	6	109827679	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	23476569	109827679	61287388	317	61607										
FIG4	0	genome.wustl.edu	37	chr6	110113866	110113866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagatttctccatttattcaAggtgagatactttcatgtag	7	6	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	110113866	110113866	A	G	SNP	FIG4	ENST00000230124	human	ensembl	69_37n	1	known	missense	c.2458	p.R820G	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367	62	0	0	66	40	37.74	-	-	-	G	110113866	A	G	110113866	3	3	708	1	0	0	0	0	1	0	0	0	5934	86	3	5	2540	5	FIG4	6	110113866	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	286187	110113866	61001201	318	61608										
AMD1	0	genome.wustl.edu	37	chr6	111213605	111213605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acccagcagttatggaccagTtctacatgaaagatggtgtt	10	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	111213605	111213605	T	C	SNP	AMD1	ENST00000368885	human	ensembl	69_37n	1	known	missense	c.574	p.F192L	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505	115	0	0	157	61	27.85	-	-	-	C	111213605	T	C	111213605	3	2	708	1	0	0	0	0	1	0	0	0	566	1725	60	5	596	5	AMD1	6	111213605	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1099739	111213605	59901462	319	61609										
TUBE1	0	genome.wustl.edu	37	chr6	112397206	112397206	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaagggcttcttatgctgcTtttttaaagccccagaactt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	112397206	112397206	T	-	DEL	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	frame_shift_del	c.746	p.K249fs	0.016	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	151	0	0	150	79	34.05	-	-	-	-	112397206	T	-	112397206	7	5	708	1	0	1	0	1	0	0	0	0	16860	1609	56	0	701	0	TUBE1	6	112397206	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	1183601	112397206	58717861	320	61610										
KPNA5	0	genome.wustl.edu	37	chr6	117013467	117013467	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgttttaggaagaagttgtTactacagatatggttcagat	11	3	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	117013467	117013467	T	C	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	silent	c.252	p.V84	0.998	pfam_Importin-a_IBB,superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	139	0	0	185	27	12.74	-	-	-	C	117013467	T	C	117013467	2	2	708	1	0	0	0	0	0	0	0	1	8486	1741	61	5		5	KPNA5	6	117013467	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4616261	117013467	54101600	321	61611										
ROS1	0	genome.wustl.edu	37	chr6	117687257	117687257	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctggcaggggcttaagggAtgtctgaataattgtgaact	13	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	117687257	117687257	A	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.2794	p.S932T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	83	0	0	79	51	39.23	-	-	-	T	117687257	A	T	117687257	3	4	708	1	0	0	0	0	1	0	0	0	13617	333	12	5	4353	5	ROS1	6	117687257	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	673790	117687257	53427810	322	61612										
FAM184A	0	genome.wustl.edu	37	chr6	119282932	119282932	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagacgggtctcacctcaaaAatgtcttgggccctttaggt	11	10	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	119282932	119282932	A	T	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	missense	c.3335	p.F1112Y	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	83	0	0	61	74	54.81	-	-	-	T	119282932	A	T	119282932	3	4	708	1	0	0	0	0	1	0	0	0	5552	14	1	5	95	5	FAM184A	6	119282932	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1595675	119282932	51832135	323	61613										
THEMIS	0	genome.wustl.edu	37	chr6	128134626	128134626	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actgatgcaccagaaactggTccccaacagatacggatgac	9	12	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	128134626	128134626	T	C	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.1160	p.D387G	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	62	0	0	80	38	31.93	-	-	-	C	128134626	T	C	128134626	3	2	708	1	0	0	0	0	1	0	0	0	15955	1667	58	5	898	5	THEMIS	6	128134626	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8851694	128134626	42980441	324	61614										
LAMA2	0	genome.wustl.edu	37	chr6	129637010	129637010	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgatcattcgaggtgggaCacctactcatgctagaatta	10	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	129637010	129637010	C	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.3839	p.T1280K	0.999	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	75	0	0	69	100	59.17	-	-	-	A	129637010	C	A	129637010	3	1	708	1	0	0	0	0	1	0	0	0	8660	478	17	4	3941	4	LAMA2	6	129637010	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1502384	129637010	41478057	325	61615										
SAMD3	0	genome.wustl.edu	37	chr6	130536412	130536412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacctgctcaactgaccaggTttccattgctgtctcctgta	8	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	130536412	130536412	T	C	SNP	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	missense	c.7	p.T3A	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	107	0	0	109	52	32.1	-	-	-	C	130536412	T	C	130536412	3	2	708	1	0	0	0	0	1	0	0	0	13906	1725	60	5	1611	5	SAMD3	6	130536412	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	899402	130536412	40578655	326	61616										
EPB41L2	0	genome.wustl.edu	37	chr6	131201317	131201317	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgctatgtctgacataaatAttatccccttctactctcaa	3	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	131201317	131201317	A	G	SNP	EPB41L2	ENST00000456097	human	ensembl	69_37n	-1	novel	missense	c.334	p.Y112H	1.000	NULL	pfam_SAB,pfam_FERM-adjacent	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPB41L2	HGNC	ENSG00000079819	105	0	0	146	26	15.12	-	-	-	G	131201317	A	G	131201317	3	3	708	1	0	0	0	0	1	0	0	0	5190	446	16	5	1182	5	EPB41L2	6	131201317	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	664905	131201317	39913750	327	61617										
ENPP1	0	genome.wustl.edu	37	chr6	132196979	132196979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggctgacacctttgaaaacAttgaagtctataacttaatg	7	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	132196979	132196979	A	G	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	1	known	missense	c.1699	p.I567V	1.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	102	0	0	100	68	40.48	-	-	-	G	132196979	A	G	132196979	3	3	708	1	0	0	0	0	1	0	0	0	5166	217	8	5	1765	5	ENPP1	6	132196979	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	995662	132196979	38918088	328	61618										
TAAR1	0	genome.wustl.edu	37	chr6	132966199	132966199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taccaaacagcatcatcttcAgtgcttttctaaaccaagga	5	11	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	132966199	132966199	A	G	SNP	TAAR1	ENST00000275216	human	ensembl	69_37n	-1	known	missense	c.944	p.L315P	0.989	pfam_7TM_GPCR_olfarory/Srsx	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trac_amin_rcpt_1,prints_Trace_amine_rcpt	-	no_errors	TAAR1	HGNC	ENSG00000146399	37	0	0	60	8	11.76	-	-	-	G	132966199	A	G	132966199	3	3	708	1	0	0	0	0	1	0	0	0	15581	188	7	5	79	5	TAAR1	6	132966199	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	769220	132966199	38148868	329	61619										
HIVEP2	0	genome.wustl.edu	37	chr6	143081364	143081364	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catgcactcctcatccatacAactaggtatgtccaatctgt	5	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	143081364	143081364	A	G	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.6061	p.C2021R	0.001	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	186	0	0	189	92	32.74	-	-	-	G	143081364	A	G	143081364	3	3	708	1	0	0	0	0	1	0	0	0	7238	130	5	5	1287	5	HIVEP2	6	143081364	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	10115165	143081364	28033703	330	61620										
UTRN	0	genome.wustl.edu	37	chr6	144750006	144750006	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggctcaaacttatttgggaaTtgaaaagctgttagatcctg	10	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	144750006	144750006	T	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.671	p.I224S	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	138	0	0	123	51	29.31	-	-	-	G	144750006	T	G	144750006	3	3	708	1	0	0	0	0	1	0	0	0	17200	1493	52	5	697	5	UTRN	6	144750006	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1668642	144750006	26365061	331	61621										
ULBP1	0	genome.wustl.edu	37	chr6	150285229	150285229	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttccttctgtgcctcccgcTtctgcacctgctgtctggct	9	16	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	150285229	150285229	T	A	SNP	ULBP1	ENST00000229708	human	ensembl	69_37n	1	known	missense	c.44	p.L15H	0.001	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981	78	0	0	46	38	44.71	-	-	-	A	150285229	T	A	150285229	3	1	708	1	0	0	0	0	1	0	0	0	17069	1609	56	5	46	5	ULBP1	6	150285229	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5535223	150285229	20829838	332	61622										
SYNE1	0	genome.wustl.edu	37	chr6	152737585	152737585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtcagtcctttcttcaatgTcctcaatgcttttcagaagc	6	11	5	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	152737585	152737585	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.5987	p.D1996G	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	163	0	0	123	104	45.81	-	-	-	C	152737585	T	C	152737585	3	2	708	1	0	0	0	0	1	0	0	0	15537	1667	58	5	20903	5	SYNE1	6	152737585	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2452356	152737585	18377482	333	61623										
ARID1B	0	genome.wustl.edu	37	chr6	157502124	157502124	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtccagctcctccaccactActggggagaagatcacgaag	10	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	157502124	157502124	A	G	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.3277	p.T1093A	1.000	superfamily_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	42	0	0	58	18	23.68	-	-	-	G	157502124	A	G	157502124	3	3	708	1	0	0	0	0	1	0	0	0	916	391	14	5	3203	5	ARID1B	6	157502124	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4764539	157502124	13612943	334	61624										
TULP4	0	genome.wustl.edu	37	chr6	158915801	158915801	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagcacaactatcttgctcAggtcacgtctaatatctggg	9	11	5	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	158915801	158915801	A	G	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	missense	c.1793	p.Q598R	1.000	superfamily_Tubby_C-like	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	103	1	0.95	151	72	32.29	-	-	-	G	158915801	A	G	158915801	3	3	708	1	0	0	0	0	1	0	0	0	16873	188	7	5	1835	5	TULP4	6	158915801	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1413677	158915801	12199266	335	61625										
MLLT4	0	genome.wustl.edu	37	chr6	168352743	168352743	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgcgcaagctcatgctggAgtggcagttccagaagagac	14	10	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	168352743	168352743	A	G	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.4688	p.E1563G	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	33	0	0	23	27	54	-	-	-	G	168352743	A	G	168352743	3	3	708	1	0	0	0	0	1	0	0	0	9700	304	11	5	4802	5	MLLT4	6	168352743	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	9436942	168352743	2762324	336	61626										
MLLT4	0	genome.wustl.edu	37	chr6	168369817	168369817	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaactcttacccaggatctActggagcagctgttggagcc	10	12	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	6	168369817	168369817	A	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.5260	p.T1754S	0.002	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	71	0	0	115	24	17.27	-	-	-	T	168369817	A	T	168369817	3	4	708	1	0	0	0	0	1	0	0	0	9700	391	14	5	5513	5	MLLT4	6	168369817	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	17074	168369817	2745250	337	61627										
INTS1	0	genome.wustl.edu	37	chr7	1526286	1526286	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggccagcacgcgggaggccAcctgggaggagccgaggcgc	19	13	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	1526286	1526286	A	G	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.3380	p.V1127A	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	29	0	0	14	14	50	-	-	-	G	1526286	A	G	1526286	3	3	708	1	0	0	0	0	1	0	0	0	7829	159	6	5	3729	5	INTS1	7	1526286	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		1526286	157612377	338	61628										
AMZ1	0	genome.wustl.edu	37	chr7	2748352	2748352	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagttccttccagggcacggTgagccggggccccagcagct	14	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	2748352	2748352	T	C	SNP	AMZ1	ENST00000312371	human	ensembl	69_37n	1	known	splice_site	c.601+2	e3+2	1.000	-	-	-	no_errors	AMZ1	HGNC	ENSG00000174945	51	0	0	22	8	25.81	-	-	-	C	2748352	T	C	2748352	5	2	708	1	0	0	0	0	0	0	1	0	596	1710	59	5	613	5	AMZ1	7	2748352	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1222066	2748352	156390311	339	61629										
AIMP2	0	genome.wustl.edu	37	chr7	6063111	6063111	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaagagggaagcagtaaagAaaaagccgctgttttccgct							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	6063111	6063111	A	-	DEL	AIMP2	ENST00000223029	human	ensembl	69_37n	1	known	frame_shift_del	c.752	p.A253fs	1.000	superfamily_Glutathione-S-Trfase_C-like	superfamily_Glutathione-S-Trfase_C-like	-	no_errors	AIMP2	HGNC	ENSG00000106305	59	0	0	67	37	35.24	-	-	-	-	6063111	A	-	6063111	7	5	708	1	0	1	0	1	0	0	0	0	434	246	9	0	766	0	AIMP2	7	6063111	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	3314759	6063111	153075552	340	61630										
ITGB8	0	genome.wustl.edu	37	chr7	20418860	20418860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttggatttggctcatacgTtgataaaacagtttcaccat	7	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	20418860	20418860	T	C	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	1	known	missense	c.575	p.V192A	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	126	0	0	100	65	39.16	-	-	-	C	20418860	T	C	20418860	3	2	708	1	0	0	0	0	1	0	0	0	7955	1725	60	5	589	5	ITGB8	7	20418860	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	14355749	20418860	138719803	341	61631										
PKD1L1	0	genome.wustl.edu	37	chr7	47925473	47925473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggctctgtgggggttccccTtggagctgaagtggcaggtt	18	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	47925473	47925473	T	C	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.3016	p.R1006G	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	59	0	0	88	43	32.82	-	-	-	C	47925473	T	C	47925473	3	2	708	1	0	0	0	0	1	0	0	0	12038	1608	56	5	5693	5	PKD1L1	7	47925473	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	27506613	47925473	111213190	342	61632										
ABCA13	0	genome.wustl.edu	37	chr7	48259016	48259016	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctggcctttttaaaagagaTacaagacctggcagaggaaa	10	8	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	48259016	48259016	T	A	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.353	p.I118K	0.423	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	41	0	0	40	23	36.51	-	-	-	A	48259016	T	A	48259016	3	1	708	1	0	0	0	0	1	0	0	0	31	1406	49	5	196	5	ABCA13	7	48259016	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	333543	48259016	110879647	343	61633										
ABCA13	0	genome.wustl.edu	37	chr7	48285189	48285189	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaaactggaaaaggatgtgTtcttttgggagctgaaacag	13	4	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	48285189	48285189	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.1471	p.F491L	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	64	0	0	80	33	29.2	-	-	-	C	48285189	T	C	48285189	3	2	708	1	0	0	0	0	1	0	0	0	31	1725	60	5	1346	5	ABCA13	7	48285189	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	26173	48285189	110853474	344	61634										
ABCA13	0	genome.wustl.edu	37	chr7	48407468	48407469	+	Frame_Shift_Ins	INS	-	-	A													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctgtggccagcatggtcagINSaaagttggtgtatgagcagg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	48407468	48407469	-	A	INS	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	frame_shift_ins	c.10766_10767	p.L3591fs	0.994:0.885	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	143	0	0	170	56	24.78	-	-	-	A	48407469	-	A	48407468	7	5	708	1	0	1	1	0	0	0	0	0	31	942	33	0	10721	0	ABCA13	7	48407468	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	122279	48407468	110731195	345	61635										
ZNF117	0	genome.wustl.edu	37	chr7	64439557	64439557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtagaaattcactctagttTggattcttttatgttgagtt	8	4	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	64439557	64439557	T	C	SNP	ZNF117	ENST00000282869	human	ensembl	69_37n	-1	known	missense	c.392	p.Q131R	0.023	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF117	HGNC	ENSG00000152926	103	0	0	154	46	23	-	-	-	C	64439557	T	C	64439557	3	2	708	1	0	0	0	0	1	0	0	0	17813	1812	63	5	1063	5	ZNF117	7	64439557	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	16032089	64439557	94699106	346	61636										
TYW1	0	genome.wustl.edu	37	chr7	66474575	66474575	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttggtcctattagggattCgcaacagttcttgctgaagc	10	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	66474575	66474575	C	T	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	silent	c.279	p.F93	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874	167	0	0	245	86	25.98	-	-	-	T	66474575	C	T	66474575	2	4	708	1	0	0	0	0	0	0	0	1	16915	883	31	1		1	TYW1	7	66474575	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2035018	66474575	92664088	347	61637										
TYW1	0	genome.wustl.edu	37	chr7	66490011	66490011	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcatgtgaagaaagaaaaggTaccgttactttgggaaatgt	11	4	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	66490011	66490011	T	C	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	splice_site	c.984+2	e7+2	1.000	-	-	-	no_errors	TYW1	HGNC	ENSG00000198874	166	0	0	238	83	25.86	-	-	-	C	66490011	T	C	66490011	5	2	708	1	0	0	0	0	0	0	1	0	16915	1652	57	5	1012	5	TYW1	7	66490011	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	15436	66490011	92648652	348	61638										
STAG3L4	0	genome.wustl.edu	37	chr7	66774043	66774043	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catcctcctccatgatgactTccctatggacaacctcatct	4	16	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	66774043	66774043	T	A	SNP	STAG3L4	ENST00000416602	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STAG3L4	HGNC	ENSG00000106610	163	0	0	182	61	25.1	-	-	-	A	66774043	T	A	66774043	1	1	708	0	1	0	0	0	0	0	0	0	15338	1783	62	5		5	STAG3L4	7	66774043	RNA	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	284032	66774043	92364620	349	61639										
POM121	0	genome.wustl.edu	37	chr7	72416772	72416772	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagcacacccgcaaaaagtAgcctttgtcccctgtccctg	8	16	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	72416772	72416772	A	G	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	nonstop	c.3749	p.*1250W	0.996	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	139	0	0	109	41	27.33	-	-	-	G	72416772	A	G	72416772	4	3	708	1	0	0	0	0	0	0	0	0	12313	433	15	5	3000	5	POM121	7	72416772	Nonstop_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5642729	72416772	86721891	350	61640										
BAZ1B	0	genome.wustl.edu	37	chr7	72903631	72903631	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcaccagtaccagctcgtaAtgcattatgccgtataaagt	7	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	72903631	72903631	A	C	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.784	p.L262V	0.317	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	106	0	0	149	27	15.34	-	-	-	C	72903631	A	C	72903631	3	2	708	1	0	0	0	0	1	0	0	0	1334	98	4	5	3723	5	BAZ1B	7	72903631	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	486859	72903631	86235032	351	61641										
GTF2I	0	genome.wustl.edu	37	chr7	74105366	74105366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcagtgtatgaaacagacgTgtttgtcgtcggaactgaaa	12	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	74105366	74105366	T	C	SNP	GTF2I	ENST00000324896	human	ensembl	69_37n	1	known	missense	c.161	p.V54A	0.997	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809	100	0	0	112	47	29.56	-	-	-	C	74105366	T	C	74105366	3	2	708	1	0	0	0	0	1	0	0	0	6918	1696	59	5	167	5	GTF2I	7	74105366	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1201735	74105366	85033297	352	61642										
GTF2IRD2	0	genome.wustl.edu	37	chr7	74212284	74212284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taggtcctctacaggctgcaCgggggatttctgggttggac	15	9	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	74212284	74212284	C	T	SNP	GTF2IRD2	ENST00000405086	human	ensembl	69_37n	-1	known	missense	c.1567	p.V523M	0.073	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275	49	0	0	64	24	27.27	-	-	-	T	74212284	C	T	74212284	3	4	708	1	0	0	0	0	1	0	0	0	6920	536	19	1	1286	1	GTF2IRD2	7	74212284	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	106918	74212284	84926379	353	61643										
POM121C	0	genome.wustl.edu	37	chr7	75051330	75051331	+	Frame_Shift_Del	DEL	AG	AG	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtagccggggccggggctgcAgagtttccaaaagtgaaaga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	75051330	75051331	AG	-	DEL	POM121C	ENST00000257665	human	ensembl	69_37n	-1	known	frame_shift_del	c.2931_2930	p.S977fs	0.741:0.876	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	36	0	0	30	12	28.57	-	-	-	-	75051331	AG	-	75051330	7	5	708	1	0	1	0	1	0	0	0	0	12314	175	7	0	770	0	POM121C	7	75051330	Frame_Shift_Del	DEL	AG	TCGA-D8-A1XK-01A-21D-A14K-09	839046	75051330	84087333	354	61644										
POMZP3	0	genome.wustl.edu	37	chr7	76247566	76247566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggagtgtatctggcccgggTcgaggaactttgaatgcaga	15	7	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	76247566	76247566	T	C	SNP	POMZP3	ENST00000424818	human	ensembl	69_37n	-1	known	missense	c.398	p.D133G	0.277	NULL	NULL	-	no_errors	POMZP3	HGNC	ENSG00000146707	132	0	0	174	21	10.77	-	-	-	C	76247566	T	C	76247566	3	2	708	1	0	0	0	0	1	0	0	0	12321	1654	58	5	303	5	POMZP3	7	76247566	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1196236	76247566	82891097	355	61645										
FZD1	0	genome.wustl.edu	37	chr7	90895054	90895054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaaggtgccctcctacctcAactaccacttcctgggggag	9	15	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	90895054	90895054	A	C	SNP	FZD1	ENST00000287934	human	ensembl	69_37n	1	known	missense	c.859	p.N287H	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240	21	0	0	23	6	20.69	-	-	-	C	90895054	A	C	90895054	3	2	708	1	0	0	0	0	1	0	0	0	6177	130	5	5	861	5	FZD1	7	90895054	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	14647488	90895054	68243609	356	61646										
SAMD9	0	genome.wustl.edu	37	chr7	92731303	92731303	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcattgttctaagagaaaagTatattcgttcactatacatt	6	6	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	92731303	92731303	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.4108	p.T1370A	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	86	0	0	113	23	16.91	-	-	-	C	92731303	T	C	92731303	3	2	708	1	0	0	0	0	1	0	0	0	13912	1638	57	5	665	5	SAMD9	7	92731303	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1836249	92731303	66407360	357	61647										
SAMD9	0	genome.wustl.edu	37	chr7	92731998	92731998	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaatgttcccgtttcctccgTtttcctctatccaccatctt	3	15	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	92731998	92731998	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.3413	p.N1138S	0.002	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	123	0	0	161	46	22.22	-	-	-	C	92731998	T	C	92731998	3	2	708	1	0	0	0	0	1	0	0	0	13912	1725	60	5	1360	5	SAMD9	7	92731998	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	695	92731998	66406665	358	61648										
CCDC132	0	genome.wustl.edu	37	chr7	92883184	92883184	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctgtagaagcttccaccTgttctcaatttgcaagaatt	6	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	92883184	92883184	T	C	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	silent	c.237	p.P79	1.000	pfam_Vacuolar_sorting-assoc_54	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	41	0	0	54	15	21.74	-	-	-	C	92883184	T	C	92883184	2	2	708	1	0	0	0	0	0	0	0	1	2792	1567	55	5		5	CCDC132	7	92883184	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	151186	92883184	66255479	359	61649										
SGCE	0	genome.wustl.edu	37	chr7	94259146	94259146	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagtgtaccttggagaaaatActgtacactgaaaacaaaga	9	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	94259146	94259146	A	G	SNP	SGCE	ENST00000445866	human	ensembl	69_37n	-1	known	silent	c.117	p.S39	0.982	pfam_Sarcoglycan_2	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990	61	0	0	66	27	29.03	-	-	-	G	94259146	A	G	94259146	2	3	708	1	0	0	0	0	0	0	0	1	14290	388	14	5		5	SGCE	7	94259146	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1375962	94259146	64879517	360	61650										
DYNC1I1	0	genome.wustl.edu	37	chr7	95657618	95657618	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgcagcggacacccttatcAgctgctgcacacacggtaat	10	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	95657618	95657618	A	C	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	silent	c.1152	p.S384	0.948	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	37	0	0	44	16	26.67	-	-	-	C	95657618	A	C	95657618	2	2	708	1	0	0	0	0	0	0	0	1	4877	175	7	5		5	DYNC1I1	7	95657618	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1398472	95657618	63481045	361	61651										
CYP3A5	0	genome.wustl.edu	37	chr7	99247813	99247813	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgggtccagttccaaagggTgtgtatatgtaaggatctat	12	6	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	99247813	99247813	T	C	SNP	CYP3A5	ENST00000222982	human	ensembl	69_37n	-1	known	silent	c.1296	p.T432	0.776	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A5	HGNC	ENSG00000106258	280	1	0.35	372	111	22.89	-	-	-	C	99247813	T	C	99247813	2	2	708	1	0	0	0	0	0	0	0	1	4211	1683	59	5		5	CYP3A5	7	99247813	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3590195	99247813	59890850	362	61652										
ZCWPW1	0	genome.wustl.edu	37	chr7	99998783	99998783	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcgtcctcaagggggacacTtccagcctcctgggtcaggg	13	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	99998783	99998783	T	C	SNP	ZCWPW1	ENST00000398027	human	ensembl	69_37n	-1	known	missense	c.1801	p.S601G	0.000	NULL	pfam_Znf_CW,pfam_PWWP,smart_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487	43	0	0	100	22	18.03	-	-	-	C	99998783	T	C	99998783	3	2	708	1	0	0	0	0	1	0	0	0	17693	1609	56	5	149	5	ZCWPW1	7	99998783	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	750970	99998783	59139880	363	61653										
AGFG2	0	genome.wustl.edu	37	chr7	100159981	100159981	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcctgggacccggggtgcCcgctgcaggtgttcctagca	14	14	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	100159981	100159981	C	A	SNP	AGFG2	ENST00000300176	human	ensembl	69_37n	1	known	missense	c.977	p.P326H	0.066	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351	23	0	0	22	13	37.14	-	-	-	A	100159981	C	A	100159981	3	1	708	1	0	0	0	0	1	0	0	0	381	623	22	4	1003	4	AGFG2	7	100159981	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	161198	100159981	58978682	364	61654										
FBXO24	0	genome.wustl.edu	37	chr7	100184262	100184262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caatagcatgggcgagaaggCggtccctttgctaaggagga	15	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	100184262	100184262	C	T	SNP	FBXO24	ENST00000241071	human	ensembl	69_37n	1	known	missense	c.14	p.A5V	0.773	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	82	0	0	110	25	18.52	-	-	-	T	100184262	C	T	100184262	3	4	708	1	0	0	0	0	1	0	0	0	5781	768	27	1	16	1	FBXO24	7	100184262	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	24281	100184262	58954401	365	61655										
GIGYF1	0	genome.wustl.edu	37	chr7	100283937	100283937	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcaccgccgcaggtgagagcTgcctccccctccccgcccct	10	22	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	100283937	100283937	T	C	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.814	p.S272G	0.958	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	51	0	0	69	18	20.69	-	-	-	C	100283937	T	C	100283937	3	2	708	1	0	0	0	0	1	0	0	0	6429	1580	55	5	2361	5	GIGYF1	7	100283937	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	99675	100283937	58854726	366	61656										
ACHE	0	genome.wustl.edu	37	chr7	100491531	100491531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cggtgccctcaaaacctgggTatagggtgtccacatattgg	12	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	100491531	100491531	T	C	SNP	ACHE	ENST00000302913	human	ensembl	69_37n	-1	known	missense	c.323	p.Y108C	1.000	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085	49	0	0	79	13	14.13	-	-	-	C	100491531	T	C	100491531	3	2	708	1	0	0	0	0	1	0	0	0	141	1638	57	5	1672	5	ACHE	7	100491531	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	207594	100491531	58647132	367	61657										
PLOD3	0	genome.wustl.edu	37	chr7	100856126	100856126	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggcacccccacctcacctgCccccccgggagtgtcctccg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	100856126	100856126	C	-	DEL	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	frame_shift_del	c.876	p.Q293fs	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	28	0	0	24	6	20	-	-	-	-	100856126	C	-	100856126	7	5	708	1	0	1	0	1	0	0	0	0	12177	726	26	0	1388	0	PLOD3	7	100856126	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	364595	100856126	58282537	368	61658										
ATXN7L1	0	genome.wustl.edu	37	chr7	105516288	105516288	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagcctcataacctccctgcTttttccaccctcttttccag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	105516288	105516288	T	-	DEL	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	frame_shift_del	c.220	p.S74fs	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	249	0	0	243	99	28.7	-	-	-	-	105516288	T	-	105516288	7	5	708	1	0	1	0	1	0	0	0	0	1220	1609	56	0	2502	0	ATXN7L1	7	105516288	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	4660162	105516288	53622375	369	61659										
SLC26A4	0	genome.wustl.edu	37	chr7	107335077	107335077	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttggcagtcggtcttggcAgctgttgtaattgccaacct	11	10	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	107335077	107335077	A	G	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	silent	c.1353	p.A451	0.993	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	169	0	0	188	63	25.1	-	-	-	G	107335077	A	G	107335077	2	3	708	1	0	0	0	0	0	0	0	1	14608	175	7	5		5	SLC26A4	7	107335077	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1818789	107335077	51803586	370	61660										
IRF5	0	genome.wustl.edu	37	chr7	128586562	128586563	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctgctgtgcagactcccagINSccccctgaggattactcttt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	128586562	128586563	-	C	INS	IRF5	ENST00000357234	human	ensembl	69_37n	1	known	frame_shift_ins	c.393_394	p.E133fs	1.000:0.996	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	167	0	0	157	31	16.49	-	-	-	C	128586563	-	C	128586562	7	5	708	1	0	1	1	0	0	0	0	0	7887	962	34	0	403	0	IRF5	7	128586562	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	21251485	128586562	30552101	371	61661										
SLC35B4	0	genome.wustl.edu	37	chr7	133981152	133981152	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaaaggatactgagtgatgAtgttcatgaggaggtagaac	13	5	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	133981152	133981152	A	G	SNP	SLC35B4	ENST00000378509	human	ensembl	69_37n	-1	known	missense	c.740	p.I247T	1.000	pfam_UAA,pfam_DUF250	pfam_UAA,pfam_DUF250	-	no_errors	SLC35B4	HGNC	ENSG00000205060	63	0	0	81	23	22.12	-	-	-	G	133981152	A	G	133981152	3	3	708	1	0	0	0	0	1	0	0	0	14667	333	12	5	263	5	SLC35B4	7	133981152	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5394590	133981152	25157511	372	61662										
TRIM24	0	genome.wustl.edu	37	chr7	138210015	138210015	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tatagaagaagcttttcagaAtcagaaagtgatcatagata	8	4	3	6			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	138210015	138210015	A	T	SNP	TRIM24	ENST00000343526	human	ensembl	69_37n	1	known	missense	c.794	p.N265I	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	40	0	0	44	24	35.29	-	-	-	T	138210015	A	T	138210015	3	4	708	1	0	0	0	0	1	0	0	0	16594	101	4	5	812	5	TRIM24	7	138210015	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4228863	138210015	20928648	373	61663										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138774443	138774443	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgttcagtccagagagttcgTgatttttcaggactttgaag	11	6	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	138774443	138774443	T	G	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.371	p.H124P	0.075	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	106	0	0	172	29	14.43	-	-	-	G	138774443	T	G	138774443	3	3	708	1	0	0	0	0	1	0	0	0	17671	1696	59	5	2389	5	ZC3HAV1	7	138774443	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	564428	138774443	20364220	374	61664										
HIPK2	0	genome.wustl.edu	37	chr7	139257859	139257859	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctggtggacgatgctggcTgggtaggcagtgtgctgcac	17	9	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	139257859	139257859	T	C	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	silent	c.3411	p.P1137	0.041	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	64	0	0	98	13	11.71	-	-	-	C	139257859	T	C	139257859	2	2	708	1	0	0	0	0	0	0	0	1	7168	1567	55	5		5	HIPK2	7	139257859	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	483416	139257859	19880804	375	61665										
TAS2R41	0	genome.wustl.edu	37	chr7	143175191	143175191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actctgcccagaaggtcgagTactctgggggtctcggccga	14	12	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	143175191	143175191	T	C	SNP	TAS2R41	ENST00000408916	human	ensembl	69_37n	1	known	missense	c.226	p.Y76H	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R41	HGNC	ENSG00000221855	112	0	0	109	42	27.81	-	-	-	C	143175191	T	C	143175191	3	2	708	1	0	0	0	0	1	0	0	0	15671	1638	57	5	228	5	TAS2R41	7	143175191	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3917332	143175191	15963472	376	61666										
CUL1	0	genome.wustl.edu	37	chr7	148463718	148463718	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcatgaaagcacacaagaTgaattagcaaggaaatgtga	9	6	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	148463718	148463718	T	C	SNP	CUL1	ENST00000325222	human	ensembl	69_37n	1	known	silent	c.855	p.D285	0.998	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130	36	0	0	32	11	25.58	-	-	-	C	148463718	T	C	148463718	2	2	708	1	0	0	0	0	0	0	0	1	4085	1461	51	5		5	CUL1	7	148463718	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5288527	148463718	10674945	377	61667										
RARRES2	0	genome.wustl.edu	37	chr7	150037692	150037692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggccagagggatcagcagccGtcgcatgcttccgtgtcacc	13	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	150037692	150037692	G	A	SNP	RARRES2	ENST00000223271	human	ensembl	69_37n	-1	known	missense	c.7	p.R3W	0.068	NULL	NULL	-	no_errors	RARRES2	HGNC	ENSG00000106538	12	0	0	7	5	41.67	-	-	-	A	150037692	G	A	150037692	3	1	708	1	0	0	0	0	1	0	0	0	13139	1144	40	1	500	1	RARRES2	7	150037692	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1573974	150037692	9100971	378	61668										
GALNTL5	0	genome.wustl.edu	37	chr7	151664478	151664478	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgtcagcttggtcccctggAaaaaaagtgcatcagcaaat							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	151664478	151664478	A	-	DEL	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	frame_shift_del	c.147	p.V52fs	0.000	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	64	0	0	49	34	40	-	-	-	-	151664478	A	-	151664478	7	5	708	1	0	1	0	1	0	0	0	0	6274	233	9	0	149	0	GALNTL5	7	151664478	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	1626786	151664478	7474185	379	61669										
DPP6	0	genome.wustl.edu	37	chr7	154585811	154585811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtactacatcaccatggtgAagtgggccaccagcaccaag	10	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	7	154585811	154585811	A	G	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	missense	c.1159	p.K387E	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	48	0	0	16	19	54.29	-	-	-	G	154585811	A	G	154585811	3	3	708	1	0	0	0	0	1	0	0	0	4765	247	9	5	1317	5	DPP6	7	154585811	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2921333	154585811	4552852	380	61670										
MCPH1	0	genome.wustl.edu	37	chr8	6302399	6302399	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatctatcatgccgaggctgCagctgtgcaggtcggaagac	14	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	6302399	6302399	C	T	SNP	MCPH1	ENST00000344683	human	ensembl	69_37n	1	known	nonsense	c.1156	p.Q386*	0.001	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	MCPH1	HGNC	ENSG00000147316	25	0	0	35	10	22.22	-	-	-	T	6302399	C	T	6302399	4	4	708	1	0	0	0	0	0	1	0	0	9469	711	25	4	1186	4	MCPH1	8	6302399	Nonsense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09		6302399	140061623	381	61671										
MFHAS1	0	genome.wustl.edu	37	chr8	8747996	8747996	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccaggcttctgcatggggcAcctcgttctgcacatagcat	10	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	8747996	8747996	A	T	SNP	MFHAS1	ENST00000276282	human	ensembl	69_37n	-1	known	missense	c.2573	p.V858E	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324	29	0	0	37	22	37.29	-	-	-	T	8747996	A	T	8747996	3	4	708	1	0	0	0	0	1	0	0	0	9592	159	6	5	597	5	MFHAS1	8	8747996	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2445597	8747996	137616026	382	61672										
DLC1	0	genome.wustl.edu	37	chr8	12957700	12957700	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttgccattgagggcggagaTctccacgcagttgagctgct	14	10	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	12957700	12957700	T	A	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.2146	p.I716F	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	51	0	0	56	33	37.08	-	-	-	A	12957700	T	A	12957700	3	1	708	1	0	0	0	0	1	0	0	0	4586	1435	50	5	2480	5	DLC1	8	12957700	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4209704	12957700	133406322	383	61673										
PCM1	0	genome.wustl.edu	37	chr8	17819685	17819685	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcaatagtagataatgaggTattgtaaattgtactctctt	7	4	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	17819685	17819685	T	C	SNP	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	splice_site	c.2463+2	e14+2	0.999	-	-	-	no_errors	PCM1	HGNC	ENSG00000078674	71	0	0	93	26	21.85	-	-	-	C	17819685	T	C	17819685	5	2	708	1	0	0	0	0	0	0	1	0	11657	1652	57	5	2519	5	PCM1	8	17819685	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4861985	17819685	128544337	384	61674										
PIWIL2	0	genome.wustl.edu	37	chr8	22210611	22210611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaattatcagcccaagatggTggtgtttgtagttcagaaga	12	5	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	22210611	22210611	T	C	SNP	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	missense	c.2543	p.V848A	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	109	0	0	139	57	29.08	-	-	-	C	22210611	T	C	22210611	3	2	708	1	0	0	0	0	1	0	0	0	12032	1696	59	5	2621	5	PIWIL2	8	22210611	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4390926	22210611	124153411	385	61675										
KIAA1967	0	genome.wustl.edu	37	chr8	22464757	22464757	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttctgcatgtagcagccctgGgccagaagcaagggatcctg	13	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	22464757	22464757	G	C	SNP	KIAA1967	ENST00000308511	human	ensembl	69_37n	1	known	missense	c.406	p.G136R	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	KIAA1967	HGNC	ENSG00000158941	86	0	0	122	22	15.28	-	-	-	C	22464757	G	C	22464757	3	2	708	1	0	0	0	0	1	0	0	0	8317	1232	43	4	424	4	KIAA1967	8	22464757	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	254146	22464757	123899265	386	61676										
RHOBTB2	0	genome.wustl.edu	37	chr8	22864368	22864368	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggacgtctttgacaacgccAtccgagctgcactcatctcc	8	15	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	22864368	22864368	A	G	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	missense	c.610	p.I204V	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	54	0	0	31	22	41.51	-	-	-	G	22864368	A	G	22864368	3	3	708	1	0	0	0	0	1	0	0	0	13418	217	8	5	709	5	RHOBTB2	8	22864368	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	399611	22864368	123499654	387	61677										
RHOBTB2	0	genome.wustl.edu	37	chr8	22864740	22864740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccactctgatcaacaccacCaccatcaccaccaccaccat	2	21	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	22864740	22864740	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	69_37n	1	known	missense	c.982	p.H328Y	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853	32	0	0	30	11	26.83	-	-	-	T	22864740	C	T	22864740	3	4	708	1	0	0	0	0	1	0	0	0	13418	594	21	4	1081	4	RHOBTB2	8	22864740	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	372	22864740	123499282	388	61678										
PBK	0	genome.wustl.edu	37	chr8	27690580	27690581	+	Frame_Shift_Ins	INS	-	-	T													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgctatcttaccagatttcINStttttttctgataatttgct							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	27690580	27690581	-	T	INS	PBK	ENST00000301905	human	ensembl	69_37n	-1	known	frame_shift_ins	c.51_50	p.K18fs	0.952:0.950	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PBK	HGNC	ENSG00000168078	249	0	0	325	61	15.8	-	-	-	T	27690581	-	T	27690580	7	5	708	1	0	1	1	0	0	0	0	0	11561	912	32	0	945	0	PBK	8	27690580	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	4825840	27690580	118673442	389	61679										
HMBOX1	0	genome.wustl.edu	37	chr8	28827600	28827600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attatacagatgaacccagaTttaccatagagcagatagat	7	7	0	6			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	28827600	28827600	T	G	SNP	HMBOX1	ENST00000444075	human	ensembl	69_37n	1	known	missense	c.64	p.F22V	1.000	NULL	pfam_HNF-1_N,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HMBOX1	HGNC	ENSG00000147421	21	0	0	24	15	38.46	-	-	-	G	28827600	T	G	28827600	3	3	708	1	0	0	0	0	1	0	0	0	7269	1493	52	5	70	5	HMBOX1	8	28827600	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1137020	28827600	117536422	390	61680										
TEX15	0	genome.wustl.edu	37	chr8	30701524	30701524	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttattccacaggttttggtcTaccaacagttctcttgaaat	6	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	30701524	30701524	T	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.5010	p.V1670	0.306	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	91	0	0	114	43	27.39	-	-	-	C	30701524	T	C	30701524	2	2	708	1	0	0	0	0	0	0	0	1	15874	1509	53	5		5	TEX15	8	30701524	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1873924	30701524	115662498	391	61681										
UNC5D	0	genome.wustl.edu	37	chr8	35624486	35624486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actgtgccttctccctggagCgttatacgcccactaccacc	7	17	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	35624486	35624486	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.2380	p.R794C	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	52	0	0	48	29	37.66	-	-	-	T	35624486	C	T	35624486	3	4	708	1	0	0	0	0	1	0	0	0	17092	768	27	1	2438	1	UNC5D	8	35624486	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	4922962	35624486	110739536	392	61682										
DDHD2	0	genome.wustl.edu	37	chr8	38117571	38117571	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttatagggagtctgaagatAcagtattgctcgtcctcaaa	9	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	38117571	38117571	A	G	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	1	known	missense	c.2068	p.T690A	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	173	0	0	188	86	31.27	-	-	-	G	38117571	A	G	38117571	3	3	708	1	0	0	0	0	1	0	0	0	4358	391	14	5	2192	5	DDHD2	8	38117571	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2493085	38117571	108246451	393	61683										
FGFR1	0	genome.wustl.edu	37	chr8	38287248	38287248	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcactgcccgaggggctgcTggttacgcaagcatagaggc	15	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	38287248	38287248	T	G	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	missense	c.409	p.S137R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	53	0	0	45	12	21.05	-	-	-	G	38287248	T	G	38287248	3	3	708	1	0	0	0	0	1	0	0	0	5909	1580	55	5	2462	5	FGFR1	8	38287248	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	169677	38287248	108076774	394	61684										
THAP1	0	genome.wustl.edu	37	chr8	42693202	42693202	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttctggaagtgaacaaccTcctttaatttttcaagctgc	6	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	42693202	42693202	T	C	SNP	THAP1	ENST00000254250	human	ensembl	69_37n	-1	known	missense	c.545	p.E182G	0.999	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP1	HGNC	ENSG00000131931	114	0	0	137	38	21.71	-	-	-	C	42693202	T	C	42693202	3	2	708	1	0	0	0	0	1	0	0	0	15936	1551	54	5	100	5	THAP1	8	42693202	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4405954	42693202	103670820	395	61685										
PRKDC	0	genome.wustl.edu	37	chr8	48713538	48713538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcttaagtagcttgacacgTtgttctcatctgttggatta	9	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	48713538	48713538	T	C	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.9929	p.N3310S	0.003	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	63	0	0	87	35	28.69	-	-	-	C	48713538	T	C	48713538	3	2	708	1	0	0	0	0	1	0	0	0	12602	1725	60	5	2518	5	PRKDC	8	48713538	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6020336	48713538	97650484	396	61686										
DNAJC5B	0	genome.wustl.edu	37	chr8	66988984	66988984	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatcaacaacgcccacgcaaTacttaccgacatttcaaaga	4	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	66988984	66988984	T	C	SNP	DNAJC5B	ENST00000276570	human	ensembl	69_37n	1	known	missense	c.209	p.I70T	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5B	HGNC	ENSG00000147570	51	0	0	90	18	16.67	-	-	-	C	66988984	T	C	66988984	3	2	708	1	0	0	0	0	1	0	0	0	4686	1406	49	5	215	5	DNAJC5B	8	66988984	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	18275446	66988984	79375038	397	61687										
TRPA1	0	genome.wustl.edu	37	chr8	72967993	72967993	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acacattaaagccaagtaggTtatttacagaaccagggccc	8	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	72967993	72967993	T	C	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.1292	p.N431S	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	84	0	0	82	38	31.67	-	-	-	C	72967993	T	C	72967993	3	2	708	1	0	0	0	0	1	0	0	0	16673	1725	60	5	2135	5	TRPA1	8	72967993	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5979009	72967993	73396029	398	61688										
ZFHX4	0	genome.wustl.edu	37	chr8	77764386	77764386	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctctttccattttatatAcctgggacggagttcagctt	7	9	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	77764386	77764386	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.5229	p.I1743M	0.976	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	94	0	0	94	56	37.09	-	-	-	G	77764386	A	G	77764386	3	3	708	1	0	0	0	0	1	0	0	0	17731	381	14	5	5263	5	ZFHX4	8	77764386	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4796393	77764386	68599636	399	61689										
SLC10A5	0	genome.wustl.edu	37	chr8	82606776	82606776	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attagtggtaaaataagcatTaggatatttctatcaatatg	7	3	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	82606776	82606776	T	C	SNP	SLC10A5	ENST00000518568	human	ensembl	69_37n	-1	known	silent	c.432	p.L144	0.003	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598	113	0	0	137	73	34.76	-	-	-	C	82606776	T	C	82606776	2	2	708	1	0	0	0	0	0	0	0	1	14466	1741	61	5		5	SLC10A5	8	82606776	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4842390	82606776	63757246	400	61690										
KIAA1429	0	genome.wustl.edu	37	chr8	95503934	95503934	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtggccgttttggtggaggtAttccatcttgaggaaccact	13	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	95503934	95503934	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.5012	p.I1671T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	149	0	0	215	64	22.94	-	-	-	G	95503934	A	G	95503934	3	3	708	1	0	0	0	0	1	0	0	0	8283	449	16	5	438	5	KIAA1429	8	95503934	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	12897158	95503934	50860088	401	61691										
INTS8	0	genome.wustl.edu	37	chr8	95861747	95861747	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtctttgaaaggaaacatgGctgcttttctaaagtaagta	9	5	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	95861747	95861747	G	A	SNP	INTS8	ENST00000520526	human	ensembl	69_37n	1	novel	nonsense	c.783	p.W261*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS8	HGNC	ENSG00000164941	60	0	0	69	21	23.33	-	-	-	A	95861747	G	A	95861747	4	1	708	1	0	0	0	0	0	1	0	0	7838	1203	42	4	1360	4	INTS8	8	95861747	Nonsense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	357813	95861747	50502275	402	61692										
INTS8	0	genome.wustl.edu	37	chr8	95888477	95888477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctatggactcctactacgacTacatatgggatgttaccatt	7	10	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	95888477	95888477	T	C	SNP	INTS8	ENST00000523731	human	ensembl	69_37n	1	known	missense	c.2791	p.Y931H	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941	136	0	0	203	32	13.62	-	-	-	C	95888477	T	C	95888477	3	2	708	1	0	0	0	0	1	0	0	0	7838	1522	53	5	2889	5	INTS8	8	95888477	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	26730	95888477	50475545	403	61693										
PTDSS1	0	genome.wustl.edu	37	chr8	97321789	97321789	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aactttgttctttcagacagTactacgcttacctcaccgac	5	13	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	97321789	97321789	T	C	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	missense	c.1012	p.Y338H	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	90	0	0	116	41	26.11	-	-	-	C	97321789	T	C	97321789	3	2	708	1	0	0	0	0	1	0	0	0	12816	1638	57	5	1046	5	PTDSS1	8	97321789	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1433312	97321789	49042233	404	61694										
SPAG1	0	genome.wustl.edu	37	chr8	101178092	101178092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacagaattttgtgaaaagcAtcttcaagccttggcccctg	8	10	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	101178092	101178092	A	G	SNP	SPAG1	ENST00000251809	human	ensembl	69_37n	1	known	missense	c.191	p.H64R	0.995	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450	52	0	0	83	27	24.32	-	-	-	G	101178092	A	G	101178092	3	3	708	1	0	0	0	0	1	0	0	0	15066	217	8	5	197	5	SPAG1	8	101178092	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3856303	101178092	45185930	405	61695										
GRHL2	0	genome.wustl.edu	37	chr8	102661727	102661727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgaagggcctgatggaagcGgtaagccatatactcctttc	12	9	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	102661727	102661727	G	A	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	silent	c.1698	p.A566	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	102	0	0	204	28	12.02	-	-	-	A	102661727	G	A	102661727	2	1	708	1	0	0	0	0	0	0	0	1	6815	1130	39	1		1	GRHL2	8	102661727	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1483635	102661727	43702295	406	61696										
AZIN1	0	genome.wustl.edu	37	chr8	103842085	103842085	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atggtatttaagtcctcagaCagtttacttgcaaaagaacc	7	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	103842085	103842085	C	A	SNP	AZIN1	ENST00000337198	human	ensembl	69_37n	-1	known	silent	c.984	p.L328	1.000	pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	AZIN1	HGNC	ENSG00000155096	116	0	0	183	43	19.03	-	-	-	A	103842085	C	A	103842085	2	1	708	1	0	0	0	0	0	0	0	1	1246	465	17	4		4	AZIN1	8	103842085	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1180358	103842085	42521937	407	61697										
CSMD3	0	genome.wustl.edu	37	chr8	113323267	113323267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataggaagactttctgcacaCagcactgctttttccaacaa	6	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	113323267	113323267	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.7825	p.V2609M	0.993	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	68	0	0	76	20	20.83	-	-	-	T	113323267	C	T	113323267	3	4	708	1	0	0	0	0	1	0	0	0	3978	478	17	4	3386	4	CSMD3	8	113323267	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	9481182	113323267	33040755	408	61698										
EXT1	0	genome.wustl.edu	37	chr8	119122937	119122937	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttttgctgtgggtatacgtAgactttgaagccgtttttct	10	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	119122937	119122937	A	T	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	missense	c.349	p.Y117N	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	74	0	0	91	64	41.29	-	-	-	T	119122937	A	T	119122937	3	4	708	1	0	0	0	0	1	0	0	0	5360	420	15	5	1935	5	EXT1	8	119122937	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5799670	119122937	27241085	409	61699										
EXT1	0	genome.wustl.edu	37	chr8	119123053	119123053	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctgccggggggaaatgtgcAcgctggaatcctcgttttcc	13	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	119123053	119123053	A	T	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	missense	c.233	p.V78E	0.698	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	49	0	0	61	31	33.7	-	-	-	T	119123053	A	T	119123053	3	4	708	1	0	0	0	0	1	0	0	0	5360	159	6	5	2051	5	EXT1	8	119123053	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	116	119123053	27240969	410	61700										
FAM91A1	0	genome.wustl.edu	37	chr8	124812115	124812115	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctttaacacattctgcagTtttaattcaggtacatttat	5	7	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	124812115	124812115	T	C	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	1	known	missense	c.1799	p.V600A	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	114	0	0	128	82	39.05	-	-	-	C	124812115	T	C	124812115	3	2	708	1	0	0	0	0	1	0	0	0	5697	1725	60	5	1869	5	FAM91A1	8	124812115	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5689062	124812115	21551907	411	61701										
TATDN1	0	genome.wustl.edu	37	chr8	125507778	125507778	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaaattagcttcagttttcAgtgagcttaaaaaaaagtgt	7	6	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	125507778	125507778	A	G	SNP	TATDN1	ENST00000276692	human	ensembl	69_37n	-1	known	missense	c.599	p.L200P	1.000	pfam_TatD_superfamily,pirsf_DNase_TatD	pfam_TatD_superfamily,pirsf_DNase_TatD	-	no_errors	TATDN1	HGNC	ENSG00000147687	41	0	0	69	11	13.75	-	-	-	G	125507778	A	G	125507778	3	3	708	1	0	0	0	0	1	0	0	0	15683	188	7	5	306	5	TATDN1	8	125507778	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	695663	125507778	20856244	412	61702										
ZFAT	0	genome.wustl.edu	37	chr8	135614769	135614769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catagagcagctgccgcttgCcctccctcgtcatcaggcag	10	16	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	135614769	135614769	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	missense	c.1193	p.G398D	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	23	0	0	22	12	35.29	-	-	-	T	135614769	C	T	135614769	3	4	708	1	0	0	0	0	1	0	0	0	17728	739	26	4	2582	4	ZFAT	8	135614769	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	10106991	135614769	10749253	413	61703										
EIF2C2	0	genome.wustl.edu	37	chr8	141567283	141567283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgtgcctgtccttgaaatActgggccaccgtgcactcca	9	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	141567283	141567283	A	G	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.931	p.Y311H	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	66	0	0	65	42	37.5	-	-	-	G	141567283	A	G	141567283	3	3	708	1	0	0	0	0	1	0	0	0	5041	391	14	5	1696	5	EIF2C2	8	141567283	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5952514	141567283	4796739	414	61704										
PTK2	0	genome.wustl.edu	37	chr8	141753416	141753416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaggacaccagaacattccGagcagcaatgtccctgataa	9	11	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	141753416	141753416	G	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.1648	p.R550W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	98	0	0	80	44	35.48	-	-	-	A	141753416	G	A	141753416	3	1	708	1	0	0	0	0	1	0	0	0	12843	1057	37	1	1562	1	PTK2	8	141753416	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	186133	141753416	4610606	415	61705										
LY6D	0	genome.wustl.edu	37	chr8	143866694	143866694	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agggccagccccaggctgagGgcactgtgggcgagggcggt	20	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	143866694	143866694	G	T	SNP	LY6D	ENST00000301263	human	ensembl	69_37n	-1	known	silent	c.330	p.A110	0.173	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6D	HGNC	ENSG00000167656	68	0	0	56	16	22.22	-	-	-	T	143866694	G	T	143866694	2	4	708	1	0	0	0	0	0	0	0	1	9157	1219	43	4		4	LY6D	8	143866694	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2113278	143866694	2497328	416	61706										
SCRIB	0	genome.wustl.edu	37	chr8	144896281	144896281	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcgcaagttcagcagccggAaaaaaggctgtgggcaggga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	144896281	144896281	A	-	DEL	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	frame_shift_del	c.167	p.F56fs	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	34	0	0	38	7	15.56	-	-	-	-	144896281	A	-	144896281	7	5	708	1	0	1	0	1	0	0	0	0	14025	246	9	0	4944	0	SCRIB	8	144896281	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	1029587	144896281	1467741	417	61707										
GPAA1	0	genome.wustl.edu	37	chr8	145138727	145138727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gactctaccaacagccaggcTgtggggctgctgctggcact	13	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	145138727	145138727	T	C	SNP	GPAA1	ENST00000529503	human	ensembl	69_37n	1	known	missense	c.401	p.L134P	0.755	NULL	NULL	-	no_errors	GPAA1	HGNC	ENSG00000197858	25	0	0	20	7	25.93	-	-	-	C	145138727	T	C	145138727	3	2	708	1	0	0	0	0	1	0	0	0	6637	1567	55	5	491	5	GPAA1	8	145138727	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	242446	145138727	1225295	418	61708										
ZNF34	0	genome.wustl.edu	37	chr8	145999963	145999963	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgtctcctgtgaagtcaacTccttgtactcagttctggtc	8	11	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	8	145999963	145999963	T	C	SNP	ZNF34	ENST00000343459	human	ensembl	69_37n	-1	known	missense	c.371	p.E124G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378	36	0	0	54	12	18.18	-	-	-	C	145999963	T	C	145999963	3	2	708	1	0	0	0	0	1	0	0	0	17952	1551	54	5	1315	5	ZNF34	8	145999963	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	861236	145999963	364059	419	61709										
DOCK8	0	genome.wustl.edu	37	chr9	441391	441391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcactcacagcaagctgcagAgagccttcgacagcatcgtt	9	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	441391	441391	A	G	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.5329	p.R1777G	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	74	0	0	123	23	15.65	-	-	-	G	441391	A	G	441391	3	3	708	1	0	0	0	0	1	0	0	0	4728	296	11	5	5491	5	DOCK8	9	441391	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		441391	140772040	420	61710										
DOCK8	0	genome.wustl.edu	37	chr9	464280	464280	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctggagaaggacttgctggTacttaaaaaatgggacattt	11	6	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	464280	464280	T	C	SNP	DOCK8	ENST00000462618	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	DOCK8	HGNC	ENSG00000107099	24	0	0	61	10	14.08	-	-	-	C	464280	T	C	464280	5	2	708	1	0	0	0	0	0	0	1	0	4728	1653	57	5		5	DOCK8	9	464280	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	22889	464280	140749151	421	61711										
RANBP6	0	genome.wustl.edu	37	chr9	6012611	6012611	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gataaccagtgtggaagaacTtcatctacatttacacagtt	7	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	6012611	6012611	T	C	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	silent	c.2997	p.E999	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	84	0	0	216	25	10.37	-	-	-	C	6012611	T	C	6012611	2	2	708	1	0	0	0	0	0	0	0	1	13114	1606	56	5		5	RANBP6	9	6012611	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5548331	6012611	135200820	422	61712										
KDM4C	0	genome.wustl.edu	37	chr9	7103861	7103861	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctttcgacataaggtcaaCcccaacgtggtaagatgtgc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	7103861	7103861	C	-	DEL	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	frame_shift_del	c.2601	p.N869fs	0.947	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	70	0	0	117	39	24.84	-	-	-	-	7103861	C	-	7103861	7	5	708	1	0	1	0	1	0	0	0	0	8184	506	18	0	2759	0	KDM4C	9	7103861	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	1091250	7103861	134109570	423	61713										
MPDZ	0	genome.wustl.edu	37	chr9	13216858	13216858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctttacaaagattcctgaaGgttctaagattagaaatagt	7	5	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	13216858	13216858	G	T	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.1205	p.P402H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	157	0	0	302	64	17.44	-	-	-	T	13216858	G	T	13216858	3	4	708	1	0	0	0	0	1	0	0	0	9794	1000	35	4	5068	4	MPDZ	9	13216858	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	6112997	13216858	127996573	424	61714										
KLHL9	0	genome.wustl.edu	37	chr9	21334379	21334379	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataagattgtaggtgttagcAattcgtccaacctcaacaca	7	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	21334379	21334379	A	G	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	silent	c.480	p.I160	0.922	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	17	0	0	44	12	21.43	-	-	-	G	21334379	A	G	21334379	2	3	708	1	0	0	0	0	0	0	0	1	8449	126	5	5		5	KLHL9	9	21334379	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	8117521	21334379	119879052	425	61715										
PLAA	0	genome.wustl.edu	37	chr9	26917106	26917106	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acatcccacctgtaaaaggaTctgctgtgggtagtgtgtta	11	8	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	26917106	26917106	T	C	SNP	PLAA	ENST00000397292	human	ensembl	69_37n	-1	known	missense	c.1475	p.D492G	1.000	NULL	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055	67	0	0	82	23	21.9	-	-	-	C	26917106	T	C	26917106	3	2	708	1	0	0	0	0	1	0	0	0	12085	1435	50	5	932	5	PLAA	9	26917106	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5582727	26917106	114296325	426	61716										
DDX58	0	genome.wustl.edu	37	chr9	32487531	32487531	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtgtttgactgttgctatcActgacgcatcaagagaagca	10	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	32487531	32487531	A	G	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	missense	c.1313	p.V438A	0.994	smart_Helicase_ATP-bd	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	55	0	0	117	29	19.86	-	-	-	G	32487531	A	G	32487531	3	3	708	1	0	0	0	0	1	0	0	0	4406	159	6	5	1504	5	DDX58	9	32487531	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5570425	32487531	108725900	427	61717										
KIF24	0	genome.wustl.edu	37	chr9	34256370	34256370	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtgctctctgccactagacTgtgcgtagccccatcctgga	10	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	34256370	34256370	T	G	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	missense	c.3235	p.S1079R	0.002	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	35	0	0	27	14	34.15	-	-	-	G	34256370	T	G	34256370	3	3	708	1	0	0	0	0	1	0	0	0	8344	1580	55	5	883	5	KIF24	9	34256370	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1768839	34256370	106957061	428	61718										
GBA2	0	genome.wustl.edu	37	chr9	35737755	35737755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgcattacctcttggatcAtggtagctgccagcccgtag	11	11	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	35737755	35737755	A	G	SNP	GBA2	ENST00000545786	human	ensembl	69_37n	-1	known	missense	c.2513	p.M838T	1.000	pfam_Glucosylceramidase,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	97	0	0	111	13	10.48	-	-	-	G	35737755	A	G	35737755	3	3	708	1	0	0	0	0	1	0	0	0	6317	217	8	5	296	5	GBA2	9	35737755	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1481385	35737755	105475676	429	61719										
GRHPR	0	genome.wustl.edu	37	chr9	37430701	37430701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagccatccccactgctgccAtctggagattttcttccccg	8	16	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	37430701	37430701	A	C	SNP	GRHPR	ENST00000377824	human	ensembl	69_37n	1	known	silent	c.792	p.P264	0.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	GRHPR	HGNC	ENSG00000137106	26	0	0	45	13	22.03	-	-	-	C	37430701	A	C	37430701	2	2	708	1	0	0	0	0	0	0	0	1	6817	232	8	5		5	GRHPR	9	37430701	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1692946	37430701	103782730	430	61720										
TJP2	0	genome.wustl.edu	37	chr9	71827470	71827470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcttttaaaacaggccccaGgcatggaagagctgatatgg	11	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	71827470	71827470	G	T	SNP	TJP2	ENST00000539225	human	ensembl	69_37n	1	known	missense	c.160	p.G54C	1.000	NULL	pfam_PDZ,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	73	0	0	108	14	11.48	-	-	-	T	71827470	G	T	71827470	3	4	708	1	0	0	0	0	1	0	0	0	16025	1000	35	4	230	4	TJP2	9	71827470	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	34396769	71827470	69385961	431	61721										
PTAR1	0	genome.wustl.edu	37	chr9	72333548	72333548	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcaggtgacaactgggtcaTgctgtgaggaaacctaccat	12	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	72333548	72333548	T	C	SNP	PTAR1	ENST00000377200	human	ensembl	69_37n	-1	novel	missense	c.763	p.M255V	0.000	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647	61	0	0	72	8	10	-	-	-	C	72333548	T	C	72333548	3	2	708	1	0	0	0	0	1	0	0	0	12804	1479	51	5		5	PTAR1	9	72333548	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	506078	72333548	68879883	432	61722										
C9orf135	0	genome.wustl.edu	37	chr9	72435881	72435881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accaccggacttggtggagcGcaagggctccctgaccctcc	12	16	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	72435881	72435881	G	A	SNP	C9orf135	ENST00000377197	human	ensembl	69_37n	1	known	missense	c.86	p.R29H	1.000	NULL	NULL	-	no_errors	C9orf135	HGNC	ENSG00000204711	31	0	0	32	14	30.43	-	-	-	A	72435881	G	A	72435881	3	1	708	1	0	0	0	0	1	0	0	0	2483	1087	38	1	88	1	C9orf135	9	72435881	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	102333	72435881	68777550	433	61723										
TRPM6	0	genome.wustl.edu	37	chr9	77457135	77457135	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attaatcgtgccaaaagtatCtgttgggcttttcgttgtgt	10	6	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	77457135	77457135	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.277	p.D93Y	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	192	0	0	181	62	25.51	-	-	-	A	77457135	C	A	77457135	3	1	708	1	0	0	0	0	1	0	0	0	16686	913	32	2	5935	2	TRPM6	9	77457135	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	5021254	77457135	63756296	434	61724										
DAPK1	0	genome.wustl.edu	37	chr9	90114005	90114005	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtttatcatgaccgtgttcAggcaggaaaacgtggatgat	12	6	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	90114005	90114005	A	G	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	1	known	missense	c.13	p.R5G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	129	0	0	158	20	11.24	-	-	-	G	90114005	A	G	90114005	3	3	708	1	0	0	0	0	1	0	0	0	4267	179	7	5	15	5	DAPK1	9	90114005	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	12656870	90114005	51099426	435	61725										
SPTLC1	0	genome.wustl.edu	37	chr9	94812243	94812243	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttaaaaaaggggaacttacaTtgattccatagtgttcagtg	9	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	94812243	94812243	T	A	SNP	SPTLC1	ENST00000262554	human	ensembl	69_37n	-1	known	missense	c.887	p.N296I	0.965	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC1	HGNC	ENSG00000090054	72	0	0	59	13	18.06	-	-	-	A	94812243	T	A	94812243	3	1	708	1	0	0	0	0	1	0	0	0	15214	1507	52	5	562	5	SPTLC1	9	94812243	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4698238	94812243	46401188	436	61726										
FGD3	0	genome.wustl.edu	37	chr9	95773518	95773518	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccttggagctcatctccacAgccgccaaccactccaatgc	6	18	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	95773518	95773518	A	G	SNP	FGD3	ENST00000337352	human	ensembl	69_37n	1	known	silent	c.999	p.T333	0.992	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084	60	0	0	24	5	17.24	-	-	-	G	95773518	A	G	95773518	2	3	708	1	0	0	0	0	0	0	0	1	5880	175	7	5		5	FGD3	9	95773518	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	961275	95773518	45439913	437	61727										
TDRD7	0	genome.wustl.edu	37	chr9	100245337	100245337	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgcccatgtcgggcaacacTggagagaatttcagaaagaa	11	8	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	100245337	100245337	T	C	SNP	TDRD7	ENST00000355295	human	ensembl	69_37n	1	known	silent	c.2619	p.T873	0.041	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	46	0	0	75	12	13.79	-	-	-	C	100245337	T	C	100245337	2	2	708	1	0	0	0	0	0	0	0	1	15830	1567	55	5		5	TDRD7	9	100245337	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4471819	100245337	40968094	438	61728										
MUSK	0	genome.wustl.edu	37	chr9	113562979	113562979	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttggatgccaccagagtccaTtttttataaccgctacacta							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	113562979	113562979	T	-	DEL	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	frame_shift_del	c.2339	p.Y782fs	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	61	0	0	79	10	11.11	-	-	-	-	113562979	T	-	113562979	7	5	708	1	0	1	0	1	0	0	0	0	10061	1493	52	0	2411	0	MUSK	9	113562979	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	13317642	113562979	27650452	439	61729										
PTGS1	0	genome.wustl.edu	37	chr9	125154527	125154527	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagacattgatgcgttggagTtctaccctggactgcttctt	11	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	125154527	125154527	T	A	SNP	PTGS1	ENST00000362012	human	ensembl	69_37n	1	known	missense	c.1504	p.F502I	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	32	0	0	34	6	15	-	-	-	A	125154527	T	A	125154527	3	1	708	1	0	0	0	0	1	0	0	0	12836	1725	60	5	1546	5	PTGS1	9	125154527	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	11591548	125154527	16058904	440	61730										
PTGES2	0	genome.wustl.edu	37	chr9	130883442	130883442	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attcagtgcgctggggaggcCtcggtgatggccctctccac	14	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	130883442	130883442	C	T	SNP	PTGES2	ENST00000338961	human	ensembl	69_37n	-1	known	silent	c.1116	p.E372	0.003	superfamily_Glutathione-S-Trfase_C-like	pfam_Glutaredoxin,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	PTGES2	HGNC	ENSG00000148334	31	0	0	26	18	40.91	-	-	-	T	130883442	C	T	130883442	2	4	708	1	0	0	0	0	0	0	0	1	12828	680	24	4		4	PTGES2	9	130883442	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	5728915	130883442	10329989	441	61731										
DOLPP1	0	genome.wustl.edu	37	chr9	131848990	131848990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgatgtctgtctctccaggcCtgtctccgagttcttcctaa	8	13	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	131848990	131848990	C	A	SNP	DOLPP1	ENST00000372546	human	ensembl	69_37n	1	known	missense	c.593	p.P198H	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DOLPP1	HGNC	ENSG00000167130	87	0	0	79	16	16.84	-	-	-	A	131848990	C	A	131848990	3	1	708	1	0	0	0	0	1	0	0	0	4739	681	24	4	619	4	DOLPP1	9	131848990	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	965548	131848990	9364441	442	61732										
NUP214	0	genome.wustl.edu	37	chr9	134073368	134073368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggcagaagcacagaagaggCcacttcatcagctttgcctg	11	11	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	134073368	134073368	C	T	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	missense	c.4490	p.A1497V	0.001	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	43	0	0	47	26	35.62	-	-	-	T	134073368	C	T	134073368	3	4	708	1	0	0	0	0	1	0	0	0	10835	739	26	4	4601	4	NUP214	9	134073368	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2224378	134073368	7140063	443	61733										
CEL	0	genome.wustl.edu	37	chr9	135946438	135946438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctacactacggaaaacagcGgctacctggagatcaccaag	9	13	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	135946438	135946438	G	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	missense	c.1558	p.G520C	0.008	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	40	0	0	46	7	13.21	-	-	-	T	135946438	G	T	135946438	3	4	708	1	0	0	0	0	1	0	0	0	3238	1116	39	3	1600	3	CEL	9	135946438	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1873070	135946438	5266993	444	61734										
TMEM8C	0	genome.wustl.edu	37	chr9	136379898	136379898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaagctgtggacataagtgtAgtcccagtcctgcggggggc	16	9	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	136379898	136379898	A	T	SNP	TMEM8C	ENST00000339996	human	ensembl	69_37n	-1	known	missense	c.526	p.Y176N	0.997	pfam_DUF3522	pfam_DUF3522	-	no_errors	TMEM8C	HGNC	ENSG00000187616	57	0	0	53	19	26.03	-	-	-	T	136379898	A	T	136379898	3	4	708	1	0	0	0	0	1	0	0	0	16311	420	15	5	143	5	TMEM8C	9	136379898	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	433460	136379898	4833533	445	61735										
OLFM1	0	genome.wustl.edu	37	chr9	138011606	138011606	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttacaacaacatgtaccactAcgcctggggtggccactcgg	10	13	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	138011606	138011606	A	G	SNP	OLFM1	ENST00000371793	human	ensembl	69_37n	1	known	missense	c.1040	p.Y347C	1.000	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558	48	0	0	65	9	12.16	-	-	-	G	138011606	A	G	138011606	3	3	708	1	0	0	0	0	1	0	0	0	10925	391	14	5	1018	5	OLFM1	9	138011606	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1631708	138011606	3201825	446	61736										
KCNT1	0	genome.wustl.edu	37	chr9	138662203	138662203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgggcgctgctccggcaacgAggtgtaccacatccgcatgg	14	13	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	9	138662203	138662203	A	G	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.1679	p.E560G	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	26	0	0	10	6	37.5	-	-	-	G	138662203	A	G	138662203	3	3	708	1	0	0	0	0	1	0	0	0	8145	304	11	5	1745	5	KCNT1	9	138662203	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	650597	138662203	2551228	447	61737										
DIP2C	0	genome.wustl.edu	37	chr10	395333	395333	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcccctctccatcagcatcAcggcgatcttctcagctctc	7	18	6	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	395333	395333	A	G	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.3047	p.V1016A	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	60	0	0	84	22	20.75	-	-	-	G	395333	A	G	395333	3	3	708	1	0	0	0	0	1	0	0	0	4565	159	6	5	1675	5	DIP2C	10	395333	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		395333	135139414	448	61738										
IDI1	0	genome.wustl.edu	37	chr10	1088521	1088521	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aattttattaaaaaccttttTatagtatgtttaggtttcag	5	3	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	1088521	1088521	T	A	SNP	IDI1	ENST00000427898	human	ensembl	69_37n	-1	known	silent	c.330	p.I110	0.001	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_stop_codon:bad_bp_length_for_coding_region	IDI1	HGNC	ENSG00000067064	59	0	0	69	38	35.51	-	-	-	A	1088521	T	A	1088521	2	1	708	1	0	0	0	0	0	0	0	1	7553	1769	61	5		5	IDI1	10	1088521	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	693188	1088521	134446226	449	61739										
WDR37	0	genome.wustl.edu	37	chr10	1149703	1149703	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggttggggggaagcaggcTgtgactgcctcctgggaccg	18	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	1149703	1149703	T	G	SNP	WDR37	ENST00000263150	human	ensembl	69_37n	1	known	silent	c.888	p.A296	0.007	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	19	0	0	23	8	25.81	-	-	-	G	1149703	T	G	1149703	2	3	708	1	0	0	0	0	0	0	0	1	17388	1567	55	5		5	WDR37	10	1149703	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	61182	1149703	134385044	450	61740										
FAM188A	0	genome.wustl.edu	37	chr10	15838114	15838114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttaccttctgggtcgtaggTttgaaaaactcttctggctt	9	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	15838114	15838114	T	C	SNP	FAM188A	ENST00000277632	human	ensembl	69_37n	-1	known	missense	c.940	p.T314A	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481	58	0	0	127	17	11.81	-	-	-	C	15838114	T	C	15838114	3	2	708	1	0	0	0	0	1	0	0	0	5555	1725	60	5	417	5	FAM188A	10	15838114	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	14688411	15838114	119696633	451	61741										
KIAA1217	0	genome.wustl.edu	37	chr10	24722057	24722057	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accatgaaaatgctggaatcGcccagtgtcgccatttacat	8	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	24722057	24722057	G	T	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	silent	c.687	p.S229	0.334	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	75	0	0	106	31	22.46	-	-	-	T	24722057	G	T	24722057	2	4	708	1	0	0	0	0	0	0	0	1	8268	1074	38	3		3	KIAA1217	10	24722057	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	8883943	24722057	110812690	452	61742										
CUL2	0	genome.wustl.edu	37	chr10	35318555	35318555	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtagcttgctggtaaactcaTaaccacaggcttgctataaa	8	9	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	35318555	35318555	T	A	SNP	CUL2	ENST00000537177	human	ensembl	69_37n	-1	known	missense	c.1457	p.Y486F	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094	60	0	0	61	21	25.61	-	-	-	A	35318555	T	A	35318555	3	1	708	1	0	0	0	0	1	0	0	0	4086	1406	49	5	865	5	CUL2	10	35318555	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	10596498	35318555	100216192	453	61743										
ERCC6	0	genome.wustl.edu	37	chr10	50668419	50668419	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaaaggttatctatattacCtggcacttctctgttggaga	8	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	50668419	50668419	C	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.4062	p.Q1354H	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	92	0	0	124	32	20.51	-	-	-	A	50668419	C	A	50668419	3	1	708	1	0	0	0	0	1	0	0	0	5254	695	24	4	427	4	ERCC6	10	50668419	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	15349864	50668419	84866328	454	61744										
ERCC6	0	genome.wustl.edu	37	chr10	50732504	50732504	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctttttcaaacgctcctcTtttttggacagaactctggc	7	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	50732504	50732504	T	C	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	silent	c.972	p.K324	0.302	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	182	0	0	210	47	18.29	-	-	-	C	50732504	T	C	50732504	2	2	708	1	0	0	0	0	0	0	0	1	5254	1606	56	5		5	ERCC6	10	50732504	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	64085	50732504	84802243	455	61745										
AGAP7	0	genome.wustl.edu	37	chr10	51465346	51465346	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttttattggcatgaggagaGgggggcgggttgagcttggg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	51465346	51465346	G	-	DEL	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	frame_shift_del	c.1110	p.S371fs	0.996	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	61	0	0	49	28	35.9	-	-	-	-	51465346	G	-	51465346	7	5	708	1	0	1	0	1	0	0	0	0	373	987	35	0	885	0	AGAP7	10	51465346	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	732842	51465346	84069401	456	61746										
PRKG1	0	genome.wustl.edu	37	chr10	53227498	53227498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttagatggtaaggttgaagTtacaaaagaaggtgtgaagt	13	1	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	53227498	53227498	T	C	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	missense	c.494	p.V165A	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	124	0	0	120	62	33.88	-	-	-	C	53227498	T	C	53227498	3	2	708	1	0	0	0	0	1	0	0	0	12603	1725	60	5	774	5	PRKG1	10	53227498	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1762152	53227498	82307249	457	61747										
FAM13C	0	genome.wustl.edu	37	chr10	61014181	61014181	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtcataaagcggctttatgAggttcttgtcttgcttagtt	11	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	61014181	61014181	A	G	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.1259	p.L420P	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	153	0	0	200	47	19.03	-	-	-	G	61014181	A	G	61014181	3	3	708	1	0	0	0	0	1	0	0	0	5494	304	11	5	514	5	FAM13C	10	61014181	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7786683	61014181	74520566	458	61748										
ANK3	0	genome.wustl.edu	37	chr10	61823945	61823946	+	Frame_Shift_Ins	INS	-	-	T													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttccgtctctggtaacccaINStttttttaataacatgaagc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	61823945	61823946	-	T	INS	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12421_12420	p.W4140fs	1.000:1.000	pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	126	0	0	136	46	25.27	-	-	-	T	61823946	-	T	61823945	7	5	708	1	0	1	1	0	0	0	0	0	622	217	8	0	1045	0	ANK3	10	61823945	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	809764	61823945	73710802	459	61749										
ANK3	0	genome.wustl.edu	37	chr10	61842479	61842479	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acagacgaccacagggctctTggctggtgtctctaatctag	11	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	61842479	61842479	T	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.4217	p.Q1406L	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	121	0	0	114	48	29.63	-	-	-	A	61842479	T	A	61842479	3	1	708	1	0	0	0	0	1	0	0	0	622	1812	63	5	9269	5	ANK3	10	61842479	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	18534	61842479	73692268	460	61750										
STOX1	0	genome.wustl.edu	37	chr10	70641762	70641762	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aataactcaatctcagttcgTacctttgggtgaagttcttt	7	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	70641762	70641762	T	C	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	missense	c.359	p.V120A	1.000	pfam_Storkhead-box_winged-helix	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	155	0	0	176	66	27.27	-	-	-	C	70641762	T	C	70641762	3	2	708	1	0	0	0	0	1	0	0	0	15410	1638	57	5	365	5	STOX1	10	70641762	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	8799283	70641762	64892985	461	61751										
SUPV3L1	0	genome.wustl.edu	37	chr10	70946251	70946251	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaaattatattatgcagtcTcattccctggatgtggacat	8	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	70946251	70946251	T	G	SNP	SUPV3L1	ENST00000359655	human	ensembl	69_37n	1	known	silent	c.402	p.S134	0.996	NULL	pfam_SUV3_C,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	-	no_errors	SUPV3L1	HGNC	ENSG00000156502	186	0	0	233	73	23.86	-	-	-	G	70946251	T	G	70946251	2	3	708	1	0	0	0	0	0	0	0	1	15493	1538	54	5		5	SUPV3L1	10	70946251	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	304489	70946251	64588496	462	61752										
USP54	0	genome.wustl.edu	37	chr10	75289458	75289458	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgtagacatttgagctctcAggcagggctgcatccaggct	12	11	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	75289458	75289458	A	G	SNP	USP54	ENST00000424265	human	ensembl	69_37n	-1	known	nonstop	c.1432	p.*478R	0.840	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP54	HGNC	ENSG00000166348	54	0	0	103	49	32.24	-	-	-	G	75289458	A	G	75289458	4	3	708	1	0	0	0	0	0	0	0	0	17182	175	7	5	3054	5	USP54	10	75289458	Nonstop_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4343207	75289458	60245289	463	61753										
KCNMA1	0	genome.wustl.edu	37	chr10	78651290	78651290	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgtggactcacccctaagTccgcaaatggcccatcgagc	10	15	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	78651290	78651290	T	C	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.3347	p.D1116G	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	30	0	0	37	7	15.91	-	-	-	C	78651290	T	C	78651290	3	2	708	1	0	0	0	0	1	0	0	0	8127	1667	58	5	416	5	KCNMA1	10	78651290	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3361832	78651290	56883457	464	61754										
KCNMA1	0	genome.wustl.edu	37	chr10	78704601	78704601	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgatgttgagtgacgccaaGatgcattccttgtcctgcag	11	9	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	78704601	78704601	G	C	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.2844	p.I948M	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	129	0	0	153	23	13.07	-	-	-	C	78704601	G	C	78704601	3	2	708	1	0	0	0	0	1	0	0	0	8127	932	33	2	931	2	KCNMA1	10	78704601	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	53311	78704601	56830146	465	61755										
KIF20B	0	genome.wustl.edu	37	chr10	91483862	91483862	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacgggaagctgactttaagTaagttatttatttcatgtcc	8	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	91483862	91483862	T	C	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	splice_site	c.1862+2	e13+2	1.000	-	-	-	no_errors	KIF20B	HGNC	ENSG00000138182	32	0	0	50	6	10.71	-	-	-	C	91483862	T	C	91483862	5	2	708	1	0	0	0	0	0	0	1	0	8339	1652	57	5	1914	5	KIF20B	10	91483862	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	12779261	91483862	44050885	466	61756										
TBC1D12	0	genome.wustl.edu	37	chr10	96271382	96271382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcatagtattttaggggcaTacacatgctacaggcctgat	10	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	96271382	96271382	T	C	SNP	TBC1D12	ENST00000225235	human	ensembl	69_37n	1	known	missense	c.1732	p.Y578H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239	201	0	0	120	107	47.14	-	-	-	C	96271382	T	C	96271382	3	2	708	1	0	0	0	0	1	0	0	0	15693	1406	49	5	1766	5	TBC1D12	10	96271382	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4787520	96271382	39263365	467	61757										
COX15	0	genome.wustl.edu	37	chr10	101486835	101486835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgtacacaaggcctacaaGgcgaccccacattcggtgtg	11	12	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	101486835	101486835	G	T	SNP	COX15	ENST00000016171	human	ensembl	69_37n	-1	known	missense	c.472	p.L158I	0.212	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	COX15	HGNC	ENSG00000014919	78	0	0	63	35	35.71	-	-	-	T	101486835	G	T	101486835	3	4	708	1	0	0	0	0	1	0	0	0	3794	1000	35	4	854	4	COX15	10	101486835	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	5215453	101486835	34047912	468	61758										
ABCC2	0	genome.wustl.edu	37	chr10	101572815	101572815	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caggccaacttgtggctgtgAtaggccctgtcggctctggg	15	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	101572815	101572815	A	G	SNP	ABCC2	ENST00000370449	human	ensembl	69_37n	1	known	missense	c.2008	p.I670V	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839	46	0	0	30	20	40	-	-	-	G	101572815	A	G	101572815	3	3	708	1	0	0	0	0	1	0	0	0	53	333	12	5	2070	5	ABCC2	10	101572815	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	85980	101572815	33961932	469	61759										
FAM178A	0	genome.wustl.edu	37	chr10	102684177	102684177	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaggagaaggagacaaaactAcctttactttcccgtgttcc	8	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	102684177	102684177	A	G	SNP	FAM178A	ENST00000370269	human	ensembl	69_37n	1	known	silent	c.1419	p.L473	0.993	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	26	0	0	42	6	12.5	-	-	-	G	102684177	A	G	102684177	2	3	708	1	0	0	0	0	0	0	0	1	5543	378	14	5		5	FAM178A	10	102684177	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1111362	102684177	32850570	470	61760										
AS3MT	0	genome.wustl.edu	37	chr10	104634356	104634356	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgttctcttttagatcaaacTgtgttattaaccttgtgcct	6	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	104634356	104634356	T	G	SNP	AS3MT	ENST00000369880	human	ensembl	69_37n	1	known	missense	c.466	p.C156G	1.000	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_Methyltransferase-rel	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435	133	0	0	179	45	20	-	-	-	G	104634356	T	G	104634356	3	3	708	1	0	0	0	0	1	0	0	0	1009	1580	55	5	488	5	AS3MT	10	104634356	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1950179	104634356	30900391	471	61761										
CCDC147	0	genome.wustl.edu	37	chr10	106163505	106163505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacaggagttttttcacatGcaaagagaattgttgaagga	11	4	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	106163505	106163505	G	A	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.2058	p.M686I	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	47	0	0	55	14	20.29	-	-	-	A	106163505	G	A	106163505	3	1	708	1	0	0	0	0	1	0	0	0	2806	1319	46	4	2112	4	CCDC147	10	106163505	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1529149	106163505	29371242	472	61762										
TCF7L2	0	genome.wustl.edu	37	chr10	114849235	114849235	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacttcactgtcagcactcAagtcttcagggacatgaaaa	8	10	5	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	114849235	114849235	A	T	SNP	TCF7L2	ENST00000355717	human	ensembl	69_37n	1	known	missense	c.560	p.Q187L	0.993	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L2	HGNC	ENSG00000148737	68	0	0	52	21	28.38	-	-	-	T	114849235	A	T	114849235	3	4	708	1	0	0	0	0	1	0	0	0	15793	130	5	5	651	5	TCF7L2	10	114849235	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	8685730	114849235	20685512	473	61763										
INPP5F	0	genome.wustl.edu	37	chr10	121582587	121582587	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcatttgggattttaggcccTgaacccactctttttggtaa	8	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	121582587	121582587	T	C	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	1	known	silent	c.2037	p.P679	0.987	pfam_Inositol_phosphatase	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	134	0	0	147	51	25.76	-	-	-	C	121582587	T	C	121582587	2	2	708	1	0	0	0	0	0	0	0	1	7812	1567	55	5		5	INPP5F	10	121582587	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6733352	121582587	13952160	474	61764										
IKZF5	0	genome.wustl.edu	37	chr10	124753556	124753556	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgctcgtgtgggcacttgGctcactgcttggacctgcca	13	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	124753556	124753556	G	C	SNP	IKZF5	ENST00000368886	human	ensembl	69_37n	-1	known	missense	c.1000	p.P334A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574	85	0	0	74	20	21.28	-	-	-	C	124753556	G	C	124753556	3	2	708	1	0	0	0	0	1	0	0	0	7672	1203	42	4	263	4	IKZF5	10	124753556	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3170969	124753556	10781191	475	61765										
CPXM2	0	genome.wustl.edu	37	chr10	125521487	125521487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgggcgtctgtcatgaggcGgtgtgtggaggcataggagt	19	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	125521487	125521487	G	A	SNP	CPXM2	ENST00000241305	human	ensembl	69_37n	-1	known	missense	c.1678	p.R560C	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898	44	0	0	47	19	28.79	-	-	-	A	125521487	G	A	125521487	3	1	708	1	0	0	0	0	1	0	0	0	3868	1116	39	1	608	1	CPXM2	10	125521487	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	767931	125521487	10013260	476	61766										
CTBP2	0	genome.wustl.edu	37	chr10	126682516	126682516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctttctcgtccaccaggccGccacgggctgcgttcacaag	11	16	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	126682516	126682516	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	silent	c.2439	p.G813	0.012	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	32	0	0	27	15	35.71	-	-	-	A	126682516	G	A	126682516	2	1	708	1	0	0	0	0	0	0	0	1	4030	1074	38	1		1	CTBP2	10	126682516	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1161029	126682516	8852231	477	61767										
BCCIP	0	genome.wustl.edu	37	chr10	127522354	127522354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgcaggaaagaactggcgGgggcacacagaaccaataag	13	9	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	127522354	127522354	G	A	SNP	BCCIP	ENST00000368759	human	ensembl	69_37n	1	known	missense	c.613	p.G205R	1.000	NULL	NULL	-	no_errors	BCCIP	HGNC	ENSG00000107949	64	0	0	65	29	30.85	-	-	-	A	127522354	G	A	127522354	3	1	708	1	0	0	0	0	1	0	0	0	1360	1232	43	4	635	4	BCCIP	10	127522354	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	839838	127522354	8012393	478	61768										
LRRC27	0	genome.wustl.edu	37	chr10	134158119	134158119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcctgcggatgtgggcagTagaacactctctccccagaa	10	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	134158119	134158119	T	C	SNP	LRRC27	ENST00000368613	human	ensembl	69_37n	1	known	missense	c.518	p.V173A	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814	52	0	0	38	20	34.48	-	-	-	C	134158119	T	C	134158119	3	2	708	1	0	0	0	0	1	0	0	0	9047	1638	57	5	532	5	LRRC27	10	134158119	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6635765	134158119	1376628	479	61769										
KNDC1	0	genome.wustl.edu	37	chr10	135038192	135038192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaggtggtgagccaggtgcAcgcgttccaggagaaccctt	14	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	10	135038192	135038192	A	G	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	missense	c.5054	p.H1685R	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	41	0	0	36	5	12.2	-	-	-	G	135038192	A	G	135038192	3	3	708	1	0	0	0	0	1	0	0	0	8479	159	6	5	5166	5	KNDC1	10	135038192	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	880073	135038192	496555	480	61770										
ATHL1	0	genome.wustl.edu	37	chr11	290715	290715	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctcacccctgagcagcccGgggggccacagcaagaggta							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	290715	290715	G	-	DEL	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	frame_shift_del	c.508	p.P172fs	0.999	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	15	0	0	13	6	30	-	-	-	-	290715	G	-	290715	7	5	708	1	0	1	0	1	0	0	0	0	1108	1116	39	0	518	0	ATHL1	11	290715	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09		290715	134715801	481	61771										
AP2A2	0	genome.wustl.edu	37	chr11	977175	977175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcccccgatcttgtccccaTgggcgactggacatcccgag	11	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	977175	977175	T	C	SNP	AP2A2	ENST00000332231	human	ensembl	69_37n	1	known	missense	c.554	p.M185T	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020	65	0	0	34	24	41.38	-	-	-	C	977175	T	C	977175	3	2	708	1	0	0	0	0	1	0	0	0	741	1464	51	5	572	5	AP2A2	11	977175	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	686460	977175	134029341	482	61772										
SYT8	0	genome.wustl.edu	37	chr11	1858526	1858526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcctcggggcagcccctgcaGcactgggcagacatgctggc	15	15	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	1858526	1858526	G	A	SNP	SYT8	ENST00000381978	human	ensembl	69_37n	1	putative	missense	c.1066	p.A356T	0.998	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT8	HGNC	ENSG00000149043	23	0	0	13	14	51.85	-	-	-	A	1858526	G	A	1858526	3	1	708	1	0	0	0	0	1	0	0	0	15572	962	34	4	1105	4	SYT8	11	1858526	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	881351	1858526	133147990	483	61773										
DNHD1	0	genome.wustl.edu	37	chr11	6578697	6578697	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaggacttcagcaacagcaaTagtgaaacagaggaggaaga	13	6	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	6578697	6578697	T	C	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	silent	c.8172	p.N2724	0.394	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	26	0	0	41	10	19.61	-	-	-	C	6578697	T	C	6578697	2	2	708	1	0	0	0	0	0	0	0	1	4703	1403	49	5		5	DNHD1	11	6578697	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4720171	6578697	128427819	484	61774										
OR2AG1	0	genome.wustl.edu	37	chr11	6806662	6806662	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccatttgtcatcctctgacaTacatgaccctcatgagctca	5	14	4	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	6806662	6806662	T	C	SNP	OR2AG1	ENST00000307401	human	ensembl	69_37n	1	known	missense	c.394	p.Y132H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2AG1	HGNC	ENSG00000170803	67	0	0	134	29	17.68	-	-	-	C	6806662	T	C	6806662	3	2	708	1	0	0	0	0	1	0	0	0	11057	1406	49	5	396	5	OR2AG1	11	6806662	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	227965	6806662	128199854	485	61775										
SCUBE2	0	genome.wustl.edu	37	chr11	9051439	9051439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agagggacctacttttacacTgggttatgtttgtggagcca	12	7	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	9051439	9051439	T	C	SNP	SCUBE2	ENST00000457346	human	ensembl	69_37n	-1	known	missense	c.2495	p.Q832R	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	124	0	0	131	45	25.57	-	-	-	C	9051439	T	C	9051439	3	2	708	1	0	0	0	0	1	0	0	0	14033	1580	55	5	611	5	SCUBE2	11	9051439	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2244777	9051439	125955077	486	61776										
MICAL2	0	genome.wustl.edu	37	chr11	12281437	12281437	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attggcaccctggaaggcagCcccccaggtatctccacctc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	12281437	12281437	C	-	DEL	MICAL2	ENST00000256194	human	ensembl	69_37n	1	known	frame_shift_del	c.3327	p.P1111fs	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	47	0	0	54	26	32.1	-	-	-	-	12281437	C	-	12281437	7	5	708	1	0	1	0	1	0	0	0	0	9641	738	26	0	3421	0	MICAL2	11	12281437	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	3229998	12281437	122725079	487	61777										
C11orf58	0	genome.wustl.edu	37	chr11	16766217	16766217	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacaaaagttcttgagacttAtgggtgcaggaaaggtaagc	12	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	16766217	16766217	A	G	SNP	C11orf58	ENST00000228136	human	ensembl	69_37n	1	known	missense	c.133	p.M45V	0.999	NULL	NULL	-	no_errors	C11orf58	HGNC	ENSG00000110696	76	0	0	121	37	23.42	-	-	-	G	16766217	A	G	16766217	3	3	708	1	0	0	0	0	1	0	0	0	1662	449	16	5	139	5	C11orf58	11	16766217	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4484780	16766217	118240299	488	61778										
MRGPRX1	0	genome.wustl.edu	37	chr11	18955941	18955941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgtgtggggcggtggcagcGgtaccagatgggccacagga	20	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	18955941	18955941	G	A	SNP	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	missense	c.391	p.R131C	0.124	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	129	0	0	154	29	15.85	-	-	-	A	18955941	G	A	18955941	3	1	708	1	0	0	0	0	1	0	0	0	9838	1116	39	1	581	1	MRGPRX1	11	18955941	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2189724	18955941	116050575	489	61779										
ZDHHC13	0	genome.wustl.edu	37	chr11	19197491	19197491	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcacccagccagggagaaggTtcttcgctcagtatgaagaa	11	10	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	19197491	19197491	T	C	SNP	ZDHHC13	ENST00000446113	human	ensembl	69_37n	1	known	missense	c.1853	p.V618A	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC13	HGNC	ENSG00000177054	99	0	0	111	51	31.1	-	-	-	C	19197491	T	C	19197491	3	2	708	1	0	0	0	0	1	0	0	0	17699	1725	60	5	1919	5	ZDHHC13	11	19197491	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	241550	19197491	115809025	490	61780										
E2F8	0	genome.wustl.edu	37	chr11	19246367	19246367	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcggccactaattgtgacccTttgggtgtcacaggaacagg	12	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	19246367	19246367	T	G	SNP	E2F8	ENST00000250024	human	ensembl	69_37n	-1	known	missense	c.2442	p.K814N	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173	55	0	0	89	33	27.05	-	-	-	G	19246367	T	G	19246367	3	3	708	1	0	0	0	0	1	0	0	0	4908	1606	56	5	165	5	E2F8	11	19246367	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	48876	19246367	115760149	491	61781										
NAV2	0	genome.wustl.edu	37	chr11	20057565	20057565	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accatagacaacctcagcacTgatgacatcaacaccagctc	5	15	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	20057565	20057565	T	C	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	silent	c.2898	p.T966	0.810	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	144	0	0	151	65	30.09	-	-	-	C	20057565	T	C	20057565	2	2	708	1	0	0	0	0	0	0	0	1	10256	1567	55	5		5	NAV2	11	20057565	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	811198	20057565	114948951	492	61782										
DCDC1	0	genome.wustl.edu	37	chr11	31287064	31287064	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgccacttaccttttgaaatAtcttcaatttttctgccata	3	10	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	31287064	31287064	A	G	SNP	DCDC1	ENST00000452803	human	ensembl	69_37n	-1	known	silent	c.1044	p.D348	0.927	superfamily_Doublecortin_dom	superfamily_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000188682	50	0	0	57	19	25	-	-	-	G	31287064	A	G	31287064	2	3	708	1	0	0	0	0	0	0	0	1	4315	446	16	5		5	DCDC1	11	31287064	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	11229499	31287064	103719452	493	61783										
QSER1	0	genome.wustl.edu	37	chr11	32996911	32996911	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taatttcttctcatttacttAaaaaaaatgtttttcagaat							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	32996911	32996911	A	-	DEL	QSER1	ENST00000524678	human	ensembl	69_37n	1	putative	frame_shift_del	c.2151	p.M720fs	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QSER1	HGNC	ENSG00000060749	67	0	0	84	21	19.63	-	-	-	-	32996911	A	-	32996911	7	5	708	1	0	1	0	1	0	0	0	0	12965	377	13	0		0	QSER1	11	32996911	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	1709847	32996911	102009605	494	61784										
CSTF3	0	genome.wustl.edu	37	chr11	33108677	33108677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttatagctgctagcttagcaCgggagacatcctgaaaatgc	10	9	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	33108677	33108677	C	T	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.1652	p.R551H	1.000	pfam_Suf	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	110	0	0	108	50	31.65	-	-	-	T	33108677	C	T	33108677	3	4	708	1	0	0	0	0	1	0	0	0	4018	536	19	1	517	1	CSTF3	11	33108677	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	111766	33108677	101897839	495	61785										
CSTF3	0	genome.wustl.edu	37	chr11	33113848	33113848	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggaggaaggcttccagatgTtaaaactcgttcaaacaaaa	9	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	33113848	33113848	T	G	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.1414	p.T472P	1.000	pfam_Suf,smart_HAT	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	118	0	0	144	45	23.81	-	-	-	G	33113848	T	G	33113848	3	3	708	1	0	0	0	0	1	0	0	0	4018	1725	60	5	763	5	CSTF3	11	33113848	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5171	33113848	101892668	496	61786										
HIPK3	0	genome.wustl.edu	37	chr11	33360386	33360386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacagtctggatgatgtagcGcatgtgagtaccatagccac	11	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	33360386	33360386	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	69_37n	1	known	silent	c.1425	p.A475	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422	57	0	0	87	20	18.69	-	-	-	A	33360386	G	A	33360386	2	1	708	1	0	0	0	0	0	0	0	1	7169	1074	38	1		1	HIPK3	11	33360386	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	246538	33360386	101646130	497	61787										
API5	0	genome.wustl.edu	37	chr11	43357466	43357466	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacccaagaaatcttcagcaGgaccaaaaagagatgccagg	9	11	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	43357466	43357466	G	T	SNP	API5	ENST00000531273	human	ensembl	69_37n	1	known	nonsense	c.1414	p.G472*	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	120	0	0	119	58	32.77	-	-	-	T	43357466	G	T	43357466	4	4	708	1	0	0	0	0	0	1	0	0	774	1001	35	4	1464	4	API5	11	43357466	Nonsense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	9997080	43357466	91649050	498	61788										
CHRM4	0	genome.wustl.edu	37	chr11	46408063	46408063	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgacgtgaccaggcgcacGgactgattgcccgagctgcc	14	13	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	46408063	46408063	G	T	SNP	CHRM4	ENST00000433765	human	ensembl	69_37n	-1	known	silent	c.45	p.S15	0.973	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Musac_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	42	0	0	49	13	20.97	-	-	-	T	46408063	G	T	46408063	2	4	708	1	0	0	0	0	0	0	0	1	3408	1103	39	3		3	CHRM4	11	46408063	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3050597	46408063	88598453	499	61789										
CKAP5	0	genome.wustl.edu	37	chr11	46799048	46799048	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attttttacatgttgcttaaTatttgggcccatggctactg	8	7	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	46799048	46799048	T	G	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.2803	p.I935L	0.980	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	142	0	0	189	76	28.68	-	-	-	G	46799048	T	G	46799048	3	3	708	1	0	0	0	0	1	0	0	0	3475	1406	49	5	3383	5	CKAP5	11	46799048	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	390985	46799048	88207468	500	61790										
AGBL2	0	genome.wustl.edu	37	chr11	47698891	47698891	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctacatcttgtccaagttcAtggaatttcttgtggatttc	7	8	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	47698891	47698891	A	G	SNP	AGBL2	ENST00000357610	human	ensembl	69_37n	-1	known	silent	c.2079	p.H693	0.015	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	113	0	0	127	50	28.25	-	-	-	G	47698891	A	G	47698891	2	3	708	1	0	0	0	0	0	0	0	1	376	214	8	5		5	AGBL2	11	47698891	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	899843	47698891	87307625	501	61791										
AGBL2	0	genome.wustl.edu	37	chr11	47721055	47721055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcctacaatctctggtacctTttcatttcctttaggctgat	5	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	47721055	47721055	T	C	SNP	AGBL2	ENST00000357610	human	ensembl	69_37n	-1	known	missense	c.637	p.K213E	0.024	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	198	0	0	196	77	28.21	-	-	-	C	47721055	T	C	47721055	3	2	708	1	0	0	0	0	1	0	0	0	376	1850	64	5	2119	5	AGBL2	11	47721055	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	22164	47721055	87285461	502	61792										
OR4A15	0	genome.wustl.edu	37	chr11	55135492	55135492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgaatttatcctcttagggCtcacacagaaccctgagggg	10	11	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	55135492	55135492	C	A	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.133	p.L45I	0.026	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	58	0	0	60	42	41.18	-	-	-	A	55135492	C	A	55135492	3	1	708	1	0	0	0	0	1	0	0	0	11113	797	28	4	135	4	OR4A15	11	55135492	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	7414437	55135492	79871024	503	61793										
SLC15A3	0	genome.wustl.edu	37	chr11	60711201	60711201	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agggcaccagggtcaccatgAcgggcaagatcttcaccagc	12	13	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	60711201	60711201	A	G	SNP	SLC15A3	ENST00000227880	human	ensembl	69_37n	-1	known	missense	c.956	p.V319A	0.990	pfam_Oligopeptide_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_Oligopeptide_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446	91	0	0	56	35	38.46	-	-	-	G	60711201	A	G	60711201	3	3	708	1	0	0	0	0	1	0	0	0	14489	275	10	5	813	5	SLC15A3	11	60711201	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5575709	60711201	74295315	504	61794										
CD5	0	genome.wustl.edu	37	chr11	60886845	60886845	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacctggagaacttcctctgCaacaacctccagtgtggctc	9	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	60886845	60886845	C	T	SNP	CD5	ENST00000347785	human	ensembl	69_37n	1	known	silent	c.603	p.C201	0.020	superfamily_Srcr_rcpt-rel,prints_Tcell_CD5,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	29	0	0	22	15	40.54	-	-	-	T	60886845	C	T	60886845	2	4	708	1	0	0	0	0	0	0	0	1	3050	718	25	4		4	CD5	11	60886845	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	175644	60886845	74119671	505	61795										
CPSF7	0	genome.wustl.edu	37	chr11	61178488	61178488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttcttggaaataatcatcaTgccgatcttcattatgaagc	6	8	5	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	61178488	61178488	T	C	SNP	CPSF7	ENST00000340437	human	ensembl	69_37n	-1	known	missense	c.1472	p.H491R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF7	HGNC	ENSG00000149532	60	0	0	40	22	34.92	-	-	-	C	61178488	T	C	61178488	3	2	708	1	0	0	0	0	1	0	0	0	3860	1464	51	5	76	5	CPSF7	11	61178488	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	291643	61178488	73828028	506	61796										
AHNAK	0	genome.wustl.edu	37	chr11	62287328	62287328	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcctttcaaatccaggtcaAcatcaggtatggagatcttg	9	9	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	62287328	62287328	A	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.14561	p.V4854A	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	116	0	0	78	57	42.22	-	-	-	G	62287328	A	G	62287328	3	3	708	1	0	0	0	0	1	0	0	0	414	43	2	5	3231	5	AHNAK	11	62287328	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1108840	62287328	72719188	507	61797										
AHNAK	0	genome.wustl.edu	37	chr11	62291016	62291016	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatgtcagctttagggagggTaacatcgacttcagggcctt	12	8	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	62291016	62291016	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.10873	p.T3625A	0.731	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	133	0	0	87	63	41.72	-	-	-	C	62291016	T	C	62291016	3	2	708	1	0	0	0	0	1	0	0	0	414	1638	57	5	6919	5	AHNAK	11	62291016	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3688	62291016	72715500	508	61798										
MTA2	0	genome.wustl.edu	37	chr11	62365601	62365601	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggggtcaaacaccagtgagtAaaaaaagcagtcctggaatt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	62365601	62365601	A	-	DEL	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	frame_shift_del	c.385	p.Y129fs	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	78	0	0	52	36	40	-	-	-	-	62365601	A	-	62365601	7	5	708	1	0	1	0	1	0	0	0	0	9981	362	13	0	1673	0	MTA2	11	62365601	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	74585	62365601	72640915	509	61799										
FKBP2	0	genome.wustl.edu	37	chr11	64009989	64009989	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcgggtggaccactgtcccAtcaaatcgcgcaaaggggat	13	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	64009989	64009989	A	G	SNP	FKBP2	ENST00000309366	human	ensembl	69_37n	1	known	missense	c.130	p.I44V	1.000	pfam_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP2	HGNC	ENSG00000173486	42	0	0	46	16	25.81	-	-	-	G	64009989	A	G	64009989	3	3	708	1	0	0	0	0	1	0	0	0	5954	217	8	5	132	5	FKBP2	11	64009989	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1644388	64009989	70996527	510	61800										
FKBP2	0	genome.wustl.edu	37	chr11	64010937	64010937	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgcaggatgtgtgagggggAaaagcgcaagctggtgatcc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	64010937	64010937	A	-	DEL	FKBP2	ENST00000309366	human	ensembl	69_37n	1	known	frame_shift_del	c.299	p.K101fs	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP2	HGNC	ENSG00000173486	48	0	0	51	14	20.59	-	-	-	-	64010937	A	-	64010937	7	5	708	1	0	1	0	1	0	0	0	0	5954	246	9	0	309	0	FKBP2	11	64010937	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	948	64010937	70995579	511	61801										
SAC3D1	0	genome.wustl.edu	37	chr11	64811984	64811984	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttggccctggatggactcAgggaagcacgggacctgtgc	15	11	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	64811984	64811984	A	C	SNP	SAC3D1	ENST00000398846	human	ensembl	69_37n	1	known	silent	c.862	p.R288	0.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	SAC3D1	HGNC	ENSG00000168061	40	0	0	41	23	35.38	-	-	-	C	64811984	A	C	64811984	2	2	708	1	0	0	0	0	0	0	0	1	13888	179	7	5		5	SAC3D1	11	64811984	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	801047	64811984	70194532	512	61802										
CAPN1	0	genome.wustl.edu	37	chr11	64978304	64978304	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggatttttcaaaactctggaCacagatctggatggagttgt	11	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	64978304	64978304	C	A	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.2079	p.D693E	1.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	135	0	0	146	54	27	-	-	-	A	64978304	C	A	64978304	3	1	708	1	0	0	0	0	1	0	0	0	2647	477	17	4	2157	4	CAPN1	11	64978304	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	166320	64978304	70028212	513	61803										
POLA2	0	genome.wustl.edu	37	chr11	65062088	65062088	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcggcttgacatccacagaTctgcttttccacctgggggc	10	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	65062088	65062088	T	C	SNP	POLA2	ENST00000525924	human	ensembl	69_37n	1	putative	missense	c.434	p.I145T	0.972	pfam_DNA_pol_alpha/epsilon_bsu	pfam_DNA_pol_alpha/epsilon_bsu	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	POLA2	HGNC	ENSG00000014138	86	0	0	104	32	23.53	-	-	-	C	65062088	T	C	65062088	3	2	708	1	0	0	0	0	1	0	0	0	12262	1432	50	5	1483	5	POLA2	11	65062088	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	83784	65062088	69944428	514	61804										
SCYL1	0	genome.wustl.edu	37	chr11	65299138	65299138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cactgaccgggccatgcgcaTccgcctcctgcagcaggtga	12	16	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	65299138	65299138	T	C	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	1	known	missense	c.1100	p.I367T	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	61	0	0	78	15	16.13	-	-	-	C	65299138	T	C	65299138	3	2	708	1	0	0	0	0	1	0	0	0	14035	1435	50	5	1130	5	SCYL1	11	65299138	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	237050	65299138	69707378	515	61805										
LRP5	0	genome.wustl.edu	37	chr11	68174114	68174114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgacatgaagacctgcatcGtgcctgaggccttcttggtc	12	11	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	68174114	68174114	G	T	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	missense	c.1924	p.V642L	0.983	pirsf_Low_density_Lipo_rcpt-rel_p5/6	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	45	0	0	21	11	34.38	-	-	-	T	68174114	G	T	68174114	3	4	708	1	0	0	0	0	1	0	0	0	9026	1145	40	3	1958	3	LRP5	11	68174114	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2874976	68174114	66832402	516	61806										
ARHGEF17	0	genome.wustl.edu	37	chr11	73021526	73021527	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaagatgatggaagcgatgINSccccccctggaagccctgac							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	73021526	73021527	-	C	INS	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	frame_shift_ins	c.1843_1844	p.G618fs	0.011:0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	54	0	0	41	27	39.71	-	-	-	C	73021527	-	C	73021526	7	5	708	1	0	1	1	0	0	0	0	0	902	1319	46	0	1845	0	ARHGEF17	11	73021526	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	4847412	73021526	61984990	517	61807										
ARHGEF17	0	genome.wustl.edu	37	chr11	73073179	73073179	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctacgtgggccaggtgtgccTgctgagcctgcgcgccgagc	16	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	73073179	73073179	T	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	69_37n	1	known	missense	c.4589	p.L1530Q	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237	19	0	0	11	8	42.11	-	-	-	A	73073179	T	A	73073179	3	1	708	1	0	0	0	0	1	0	0	0	902	1580	55	5	4639	5	ARHGEF17	11	73073179	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	51653	73073179	61933337	518	61808										
GDPD5	0	genome.wustl.edu	37	chr11	75153568	75153568	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaggctgcagatggactggTtctgggcctctctgtggtcg	15	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	75153568	75153568	T	C	SNP	GDPD5	ENST00000336898	human	ensembl	69_37n	-1	known	missense	c.1007	p.N336S	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD5	HGNC	ENSG00000158555	39	0	0	44	18	29.03	-	-	-	C	75153568	T	C	75153568	3	2	708	1	0	0	0	0	1	0	0	0	6379	1725	60	5	834	5	GDPD5	11	75153568	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2080389	75153568	59852948	519	61809										
NAALAD2	0	genome.wustl.edu	37	chr11	89891367	89891367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggaatcccccgaatacctgTacatcccattggatataatg	8	11	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	89891367	89891367	T	C	SNP	NAALAD2	ENST00000534061	human	ensembl	69_37n	1	known	missense	c.851	p.V284A	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616	56	0	0	56	19	25.33	-	-	-	C	89891367	T	C	89891367	3	2	708	1	0	0	0	0	1	0	0	0	10200	1638	57	5	877	5	NAALAD2	11	89891367	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	14737799	89891367	45115149	520	61810										
FAT3	0	genome.wustl.edu	37	chr11	92531224	92531224	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctaccaagcagaagtaaatgAaaatgttgacattggaacat	8	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	92531224	92531224	A	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.5045	p.E1682G	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	40	0	0	57	16	21.92	-	-	-	G	92531224	A	G	92531224	3	3	708	1	0	0	0	0	1	0	0	0	5737	246	9	5	5079	5	FAT3	11	92531224	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2639857	92531224	42475292	521	61811										
FOLR4	0	genome.wustl.edu	37	chr11	94038942	94038942	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacaagctctatgaggaggTacagaggccagacctgggta	14	8	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	94038942	94038942	T	A	SNP	FOLR4	ENST00000440961	human	ensembl	69_37n	1	novel	splice_site	c.138+2	e1+2	0.997	-	-	-	no_errors	FOLR4	HGNC	ENSG00000183560	38	0	0	44	30	40.54	-	-	-	A	94038942	T	A	94038942	5	1	708	1	0	0	0	0	0	0	1	0	6030	1652	57	5	142	5	FOLR4	11	94038942	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1507718	94038942	40967574	522	61812										
ANKRD49	0	genome.wustl.edu	37	chr11	94230120	94230120	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgctgaaaaaaatcgggtAaaaaaaaaaattacagaggg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	94230120	94230120	A	-	DEL	ANKRD49	ENST00000534911	human	ensembl	69_37n	1	known	frame_shift_del	c.261	p.K90fs	1.000	NULL	NULL	-	no_errors	ANKRD49	HGNC	ENSG00000168876	23	0	0	34	9	20.45	-	-	-	-	94230120	A	-	94230120	7	5	708	1	0	1	0	1	0	0	0	0	674	377	13	0		0	ANKRD49	11	94230120	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	191178	94230120	40776396	523	61813										
ANKRD49	0	genome.wustl.edu	37	chr11	94231399	94231399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcatgcagtgactgtggatGgctggacgcccctgcacagt	13	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	94231399	94231399	G	A	SNP	ANKRD49	ENST00000302755	human	ensembl	69_37n	1	known	missense	c.421	p.G141S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD49	HGNC	ENSG00000168876	73	0	0	137	42	23.46	-	-	-	A	94231399	G	A	94231399	3	1	708	1	0	0	0	0	1	0	0	0	674	1348	47	4	427	4	ANKRD49	11	94231399	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1279	94231399	40775117	524	61814										
JRKL	0	genome.wustl.edu	37	chr11	96124811	96124811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agatcagggagtcatagcaaCgatgaagagaaattatcgtg	12	5	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	96124811	96124811	C	T	SNP	JRKL	ENST00000332349	human	ensembl	69_37n	1	known	missense	c.998	p.T333M	0.119	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	JRKL	HGNC	ENSG00000183340	43	0	0	42	16	27.59	-	-	-	T	96124811	C	T	96124811	3	4	708	1	0	0	0	0	1	0	0	0	8019	536	19	1	1000	1	JRKL	11	96124811	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1893412	96124811	38881705	525	61815										
YAP1	0	genome.wustl.edu	37	chr11	102076658	102076658	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcagtcagagtgctccagtGaaacagccaccacccctggc	9	15	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	102076658	102076658	G	A	SNP	YAP1	ENST00000282441	human	ensembl	69_37n	1	known	silent	c.837	p.V279	0.995	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	YAP1	HGNC	ENSG00000137693	23	0	0	8	14	63.64	-	-	-	A	102076658	G	A	102076658	2	1	708	1	0	0	0	0	0	0	0	1	17563	1277	45	2		2	YAP1	11	102076658	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	5951847	102076658	32929858	526	61816										
DYNC2H1	0	genome.wustl.edu	37	chr11	103036734	103036734	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggtgaataagttagagcaAtatactaacattgatacaag	8	5	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	103036734	103036734	A	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.4719	p.Q1573H	0.972	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	30	0	0	26	21	44.68	-	-	-	T	103036734	A	T	103036734	3	4	708	1	0	0	0	0	1	0	0	0	4881	98	4	5	4841	5	DYNC2H1	11	103036734	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	960076	103036734	31969782	527	61817										
RDX	0	genome.wustl.edu	37	chr11	110134808	110134808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagtttctggcgggcaatatAtctcatcatttaagatggct	9	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	110134808	110134808	A	G	SNP	RDX	ENST00000530749	human	ensembl	69_37n	-1	known	missense	c.344	p.I115T	1.000	pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710	61	0	0	48	35	42.17	-	-	-	G	110134808	A	G	110134808	3	3	708	1	0	0	0	0	1	0	0	0	13281	449	16	5	1447	5	RDX	11	110134808	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7098074	110134808	24871708	528	61818										
PIH1D2	0	genome.wustl.edu	37	chr11	111943778	111943778	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcagcacagagctgtttccCttctttcagctgctgctgaa	10	12	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	111943778	111943778	C	G	SNP	PIH1D2	ENST00000280350	human	ensembl	69_37n	-1	known	missense	c.121	p.G41R	0.942	NULL	NULL	-	no_errors	PIH1D2	HGNC	ENSG00000150773	42	0	0	93	14	13.08	-	-	-	G	111943778	C	G	111943778	3	3	708	1	0	0	0	0	1	0	0	0	11981	681	24	4	904	4	PIH1D2	11	111943778	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1808970	111943778	23062738	529	61819										
MLL	0	genome.wustl.edu	37	chr11	118366575	118366575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggagaaccagactcaccaActcctctgcatcctcctaca	5	17	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	118366575	118366575	A	G	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.5515	p.T1839A	0.995	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	65	0	0	56	33	36.26	-	-	-	G	118366575	A	G	118366575	3	3	708	1	0	0	0	0	1	0	0	0	9691	43	2	5	5589	5	MLL	11	118366575	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	6422797	118366575	16639941	530	61820										
SLC37A4	0	genome.wustl.edu	37	chr11	118899010	118899010	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggagctccaggcaaagaatAtgttgaccaggccaaccagg	12	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	11	118899010	118899010	A	G	SNP	SLC37A4	ENST00000330775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	SLC37A4	HGNC	ENSG00000137700	57	0	0	51	39	43.33	-	-	-	G	118899010	A	G	118899010	1	3	708	0	1	0	0	0	0	0	0	0	14689	449	16	5		5	SLC37A4	11	118899010	RNA	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	532435	118899010	16107506	531	61821										
WNT5B	0	genome.wustl.edu	37	chr12	1740587	1740587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggctcagcttctgacagacGccaactcctggtggtgagta	13	11	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	1740587	1740587	G	A	SNP	WNT5B	ENST00000310594	human	ensembl	69_37n	1	known	missense	c.67	p.A23T	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	31	0	0	28	9	24.32	-	-	-	A	1740587	G	A	1740587	3	1	708	1	0	0	0	0	1	0	0	0	17489	1087	38	1	69	1	WNT5B	12	1740587	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		1740587	132111308	532	61822										
ADIPOR2	0	genome.wustl.edu	37	chr12	1887038	1887038	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggtatgggaaggtcggtggCgagtgatccctcatgatgta	16	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	1887038	1887038	C	T	SNP	ADIPOR2	ENST00000357103	human	ensembl	69_37n	1	known	nonsense	c.310	p.R104*	1.000	NULL	pfam_HlyIII-related	-	no_errors	ADIPOR2	HGNC	ENSG00000006831	74	0	0	103	30	22.22	-	-	-	T	1887038	C	T	1887038	4	4	708	1	0	0	0	0	0	1	0	0	319	760	27	1	320	1	ADIPOR2	12	1887038	Nonsense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	146451	1887038	131964857	533	61823										
FOXM1	0	genome.wustl.edu	37	chr12	2983284	2983284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtttgggtttgaggccggaGtcctggaggctgagttgggg	21	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	2983284	2983284	G	T	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	missense	c.361	p.L121I	0.001	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	253	0	0	252	105	29.41	-	-	-	T	2983284	G	T	2983284	3	4	708	1	0	0	0	0	1	0	0	0	6066	1029	36	4	2080	4	FOXM1	12	2983284	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1096246	2983284	130868611	534	61824										
TULP3	0	genome.wustl.edu	37	chr12	3029956	3029956	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacttgagaagaggcaaaggAaaaagcgccttgagccattt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	3029956	3029956	A	-	DEL	TULP3	ENST00000228245	human	ensembl	69_37n	1	known	frame_shift_del	c.121	p.K42fs	1.000	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	47	0	0	47	21	29.17	-	-	-	-	3029956	A	-	3029956	7	5	708	1	0	1	0	1	0	0	0	0	16872	247	9	0	131	0	TULP3	12	3029956	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	46672	3029956	130821939	535	61825										
IFFO1	0	genome.wustl.edu	37	chr12	6660141	6660141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttacacggtcttgcagctggAtccgcaccgtgtactcctct	9	14	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	6660141	6660141	A	G	SNP	IFFO1	ENST00000356896	human	ensembl	69_37n	-1	known	missense	c.800	p.I267T	0.417	NULL	NULL	-	no_errors	IFFO1	HGNC	ENSG00000010295	62	0	0	82	19	18.81	-	-	-	G	6660141	A	G	6660141	3	3	708	1	0	0	0	0	1	0	0	0	7564	333	12	5	927	5	IFFO1	12	6660141	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3630185	6660141	127191754	536	61826										
C1RL	0	genome.wustl.edu	37	chr12	7249128	7249129	+	Frame_Shift_Del	DEL	CA	CA	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgggcatgattgtcccatacCacatagacgctgccactgtc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	7249128	7249129	CA	-	DEL	C1RL	ENST00000266542	human	ensembl	69_37n	-1	known	frame_shift_del	c.1323_1322	p.V441fs	0.835:0.797	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178	81	0	0	75	28	26.92	-	-	-	-	7249129	CA	-	7249128	7	5	708	1	0	1	0	1	0	0	0	0	1992	581	21	0	144	0	C1RL	12	7249128	Frame_Shift_Del	DEL	CA	TCGA-D8-A1XK-01A-21D-A14K-09	588987	7249128	126602767	537	61827										
CD163	0	genome.wustl.edu	37	chr12	7640574	7640574	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgcatagaacgctggcagcTtccagagagaagtccgaatc	11	11	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	7640574	7640574	T	C	SNP	CD163	ENST00000359156	human	ensembl	69_37n	-1	known	silent	c.1530	p.E510	0.961	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD163	HGNC	ENSG00000177575	54	0	0	67	33	33	-	-	-	C	7640574	T	C	7640574	2	2	708	1	0	0	0	0	0	0	0	1	2996	1606	56	5		5	CD163	12	7640574	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	391446	7640574	126211321	538	61828										
APOBEC1	0	genome.wustl.edu	37	chr12	7805077	7805077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttactccactgttaacaagGtccctgagaccttgccgatt	8	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	7805077	7805077	G	T	SNP	APOBEC1	ENST00000229304	human	ensembl	69_37n	-1	known	missense	c.399	p.D133E	0.635	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC1	HGNC	ENSG00000111701	31	0	0	35	21	37.5	-	-	-	T	7805077	G	T	7805077	3	4	708	1	0	0	0	0	1	0	0	0	789	1252	44	4	323	4	APOBEC1	12	7805077	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	164503	7805077	126046818	539	61829										
ZNF705A	0	genome.wustl.edu	37	chr12	8328540	8328540	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atccaccagtatgacaatggTaagttttatagctgtgtaca	8	7	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	8328540	8328540	T	C	SNP	ZNF705A	ENST00000359286	human	ensembl	69_37n	1	known	splice_site	c.318+2	e4+2	0.607	-	-	-	no_errors	ZNF705A	HGNC	ENSG00000196946	312	0	0	363	129	26.22	-	-	-	C	8328540	T	C	8328540	5	2	708	1	0	0	0	0	0	0	1	0	18204	1652	57	5	334	5	ZNF705A	12	8328540	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	523463	8328540	125523355	540	61830										
ITPR2	0	genome.wustl.edu	37	chr12	26703232	26703232	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctcgtaatgtctgaagaAttttaatgcacagtttttct	6	6	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	26703232	26703232	A	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.5021	p.I1674N	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	109	0	0	184	53	22.36	-	-	-	T	26703232	A	T	26703232	3	4	708	1	0	0	0	0	1	0	0	0	7975	101	4	5	3168	5	ITPR2	12	26703232	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	18374692	26703232	107148663	541	61831										
STK38L	0	genome.wustl.edu	37	chr12	27470917	27470917	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggtatttcctccagaggtAcctatatctgagaaagccaa	8	10	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	27470917	27470917	A	G	SNP	STK38L	ENST00000389032	human	ensembl	69_37n	1	known	silent	c.1044	p.V348	0.773	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38L	HGNC	ENSG00000211455	44	0	0	51	20	28.17	-	-	-	G	27470917	A	G	27470917	2	3	708	1	0	0	0	0	0	0	0	1	15395	378	14	5		5	STK38L	12	27470917	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	767685	27470917	106380978	542	61832										
KIF21A	0	genome.wustl.edu	37	chr12	39763645	39763645	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttaacagctcgagaaataatAcccagttcttcctcaacaat	4	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	39763645	39763645	A	G	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	silent	c.336	p.G112	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	88	0	0	114	50	30.49	-	-	-	G	39763645	A	G	39763645	2	3	708	1	0	0	0	0	0	0	0	1	8340	378	14	5		5	KIF21A	12	39763645	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	12292728	39763645	94088250	543	61833										
CNTN1	0	genome.wustl.edu	37	chr12	41337525	41337525	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actggaacccttgttatcacAggtaagttaatgtttgaggg	11	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	41337525	41337525	A	G	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	silent	c.1506	p.T502	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	61	0	0	79	29	26.61	-	-	-	G	41337525	A	G	41337525	2	3	708	1	0	0	0	0	0	0	0	1	3670	202	7	5		5	CNTN1	12	41337525	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1573880	41337525	92514370	544	61834										
ADAMTS20	0	genome.wustl.edu	37	chr12	43825144	43825144	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catatactcacaggaccccaTggtcctacttgccaggaagc	8	14	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	43825144	43825144	T	C	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	silent	c.3252	p.P1084	0.848	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	49	0	0	57	30	34.48	-	-	-	C	43825144	T	C	43825144	2	2	708	1	0	0	0	0	0	0	0	1	266	1451	51	5		5	ADAMTS20	12	43825144	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2487619	43825144	90026751	545	61835										
TMEM117	0	genome.wustl.edu	37	chr12	44782339	44782339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtctgacttcaatgagatcGtctacaagtcttcccaccta	7	12	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	44782339	44782339	G	A	SNP	TMEM117	ENST00000266534	human	ensembl	69_37n	1	known	missense	c.1429	p.V477I	0.911	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	73	0	0	71	38	34.86	-	-	-	A	44782339	G	A	44782339	3	1	708	1	0	0	0	0	1	0	0	0	16126	1145	40	1	1455	1	TMEM117	12	44782339	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	957195	44782339	89069556	546	61836										
ANP32D	0	genome.wustl.edu	37	chr12	48866672	48866672	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgaactaagcagtaacagAgcctcagtgggcctagaagt	11	9	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	48866672	48866672	A	G	SNP	ANP32D	ENST00000266594	human	ensembl	69_37n	1	known	silent	c.225	p.R75	0.971	NULL	NULL	-	no_errors	ANP32D	HGNC	ENSG00000139223	104	0	0	62	67	51.54	-	-	-	G	48866672	A	G	48866672	2	3	708	1	0	0	0	0	0	0	0	1	707	301	11	5		5	ANP32D	12	48866672	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4084333	48866672	84985223	547	61837										
CCNT1	0	genome.wustl.edu	37	chr12	49086842	49086842	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggaaggggtggaagtggtgGaggaggttctgatggcagag	22	2	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	49086842	49086842	G	C	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.2155	p.P719A	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	43	0	0	37	18	32.73	-	-	-	C	49086842	G	C	49086842	3	2	708	1	0	0	0	0	1	0	0	0	2963	1174	41	2	29	2	CCNT1	12	49086842	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	220170	49086842	84765053	548	61838										
KCNH3	0	genome.wustl.edu	37	chr12	49948243	49948243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctggctggcctgcacgacaGccttgcgctgtaccccgagt	13	15	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	49948243	49948243	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	missense	c.2042	p.S681N	1.000	pfam_cNMP-bd_dom,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	33	0	0	16	8	33.33	-	-	-	A	49948243	G	A	49948243	3	1	708	1	0	0	0	0	1	0	0	0	8087	971	34	4	2084	4	KCNH3	12	49948243	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	861401	49948243	83903652	549	61839										
SLC39A5	0	genome.wustl.edu	37	chr12	56629477	56629477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcttttgcggcaccgagggcTcaggccagtgagtgataccc	14	12	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	56629477	56629477	T	C	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	1	known	missense	c.938	p.L313P	0.999	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	86	0	0	47	25	34.72	-	-	-	C	56629477	T	C	56629477	3	2	708	1	0	0	0	0	1	0	0	0	14710	1551	54	5	956	5	SLC39A5	12	56629477	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6681234	56629477	77222418	550	61840										
STAT2	0	genome.wustl.edu	37	chr12	56743379	56743379	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtccagatctcaccttattGctgccctttcctgaaccacc	5	16	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	56743379	56743379	G	A	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	silent	c.1251	p.S417	0.998	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	107	0	0	90	52	36.11	-	-	-	A	56743379	G	A	56743379	2	1	708	1	0	0	0	0	0	0	0	1	15356	1310	46	4		4	STAT2	12	56743379	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	113902	56743379	77108516	551	61841										
DCTN2	0	genome.wustl.edu	37	chr12	57924554	57924554	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggttttcacgcatggttgtcTgcacctacaaagtggtagag	12	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	57924554	57924554	T	C	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	missense	c.1139	p.Q380R	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	141	0	0	110	70	38.89	-	-	-	C	57924554	T	C	57924554	3	2	708	1	0	0	0	0	1	0	0	0	4338	1580	55	5	85	5	DCTN2	12	57924554	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1181175	57924554	75927341	552	61842										
SLC16A7	0	genome.wustl.edu	37	chr12	60173290	60173290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagcaagcgtgtggctgctcAttggcaatgctatcaactat	10	10	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	60173290	60173290	A	G	SNP	SLC16A7	ENST00000261187	human	ensembl	69_37n	1	known	missense	c.1267	p.I423V	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596	49	0	0	42	27	39.13	-	-	-	G	60173290	A	G	60173290	3	3	708	1	0	0	0	0	1	0	0	0	14502	217	8	5	1281	5	SLC16A7	12	60173290	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2248736	60173290	73678605	553	61843										
ZFC3H1	0	genome.wustl.edu	37	chr12	72030786	72030786	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtggtagaggaggtagaggTtcaagagaaacacacaagcc	15	6	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	72030786	72030786	T	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	silent	c.1779	p.E593	0.825	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	98	0	0	123	21	13.91	-	-	-	C	72030786	T	C	72030786	2	2	708	1	0	0	0	0	0	0	0	1	17729	1722	60	5		5	ZFC3H1	12	72030786	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	11857496	72030786	61821109	554	61844										
THAP2	0	genome.wustl.edu	37	chr12	72070747	72070747	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttagaagcaaatagtgtattAcctaaaggtacatcagaaca	7	6	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	72070747	72070747	A	G	SNP	THAP2	ENST00000308086	human	ensembl	69_37n	1	known	silent	c.546	p.L182	0.970	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP2	HGNC	ENSG00000173451	43	0	0	20	8	28.57	-	-	-	G	72070747	A	G	72070747	2	3	708	1	0	0	0	0	0	0	0	1	15939	388	14	5		5	THAP2	12	72070747	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	39961	72070747	61781148	555	61845										
TMEM19	0	genome.wustl.edu	37	chr12	72094702	72094702	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cattcttgataacaacgcagTgaatctgttttcttctgttc	6	9	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	72094702	72094702	T	C	SNP	TMEM19	ENST00000266673	human	ensembl	69_37n	1	known	missense	c.938	p.V313A	1.000	pfam_DUF92_TMEM19	pfam_DUF92_TMEM19	-	no_errors	TMEM19	HGNC	ENSG00000139291	138	0	0	104	65	38.46	-	-	-	C	72094702	T	C	72094702	3	2	708	1	0	0	0	0	1	0	0	0	16208	1696	59	5	960	5	TMEM19	12	72094702	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	23955	72094702	61757193	556	61846										
TBC1D15	0	genome.wustl.edu	37	chr12	72300837	72300837	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaacagatcgaacaaacaagTtttatgaaggccaagataat	8	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	72300837	72300837	T	C	SNP	TBC1D15	ENST00000550746	human	ensembl	69_37n	1	known	missense	c.1270	p.F424L	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	241	0	0	229	52	18.44	-	-	-	C	72300837	T	C	72300837	3	2	708	1	0	0	0	0	1	0	0	0	15696	1725	60	5	1440	5	TBC1D15	12	72300837	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	206135	72300837	61551058	557	61847										
E2F7	0	genome.wustl.edu	37	chr12	77427807	77427807	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtaagacagatgcagaaacaTccaccagttcttcatctaca	6	11	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	77427807	77427807	T	C	SNP	E2F7	ENST00000322886	human	ensembl	69_37n	-1	known	missense	c.1139	p.D380G	0.997	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	41	0	0	42	7	14.29	-	-	-	C	77427807	T	C	77427807	3	2	708	1	0	0	0	0	1	0	0	0	4907	1435	50	5	1620	5	E2F7	12	77427807	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5126970	77427807	56424088	558	61848										
FGD6	0	genome.wustl.edu	37	chr12	95478281	95478281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagattacttacttctgagCcgaatgagcatcctctgctt	7	12	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	95478281	95478281	C	T	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.4249	p.A1417T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	74	0	0	58	38	39.58	-	-	-	T	95478281	C	T	95478281	3	4	708	1	0	0	0	0	1	0	0	0	5883	739	26	4	51	4	FGD6	12	95478281	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	18050474	95478281	38373614	559	61849										
UTP20	0	genome.wustl.edu	37	chr12	101680248	101680248	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcatatctttataagtaccTgtggagactgatggtgaagg	11	5	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	101680248	101680248	T	C	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.476	p.L159P	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	143	0	0	112	59	34.3	-	-	-	C	101680248	T	C	101680248	3	2	708	1	0	0	0	0	1	0	0	0	17196	1580	55	5	494	5	UTP20	12	101680248	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6201967	101680248	32171647	560	61850										
APPL2	0	genome.wustl.edu	37	chr12	105605039	105605039	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttctcggaattgtatgatAggtagaaccattgtgtctgc	10	6	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	105605039	105605039	A	G	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	silent	c.342	p.P114	0.385	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	117	0	0	90	65	41.94	-	-	-	G	105605039	A	G	105605039	2	3	708	1	0	0	0	0	0	0	0	1	820	407	15	5		5	APPL2	12	105605039	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3924791	105605039	28246856	561	61851										
KCTD10	0	genome.wustl.edu	37	chr12	109898454	109898454	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcctacttgtagggccgccTggcactcttccaccaggcct	10	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	109898454	109898454	T	C	SNP	KCTD10	ENST00000228495	human	ensembl	69_37n	-1	known	missense	c.374	p.Q125R	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	38	0	0	21	16	43.24	-	-	-	C	109898454	T	C	109898454	3	2	708	1	0	0	0	0	1	0	0	0	8151	1580	55	5	587	5	KCTD10	12	109898454	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4293415	109898454	23953441	562	61852										
BRAP	0	genome.wustl.edu	37	chr12	112117118	112117118	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acagcatggcactgcgccgcAcatcttcttttaaggaggtc	10	12	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	112117118	112117118	A	T	SNP	BRAP	ENST00000419234	human	ensembl	69_37n	-1	known	missense	c.470	p.V157E	1.000	pfam_BRAP2	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	55	0	0	43	33	42.86	-	-	-	T	112117118	A	T	112117118	3	4	708	1	0	0	0	0	1	0	0	0	1505	159	6	5	1344	5	BRAP	12	112117118	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2218664	112117118	21734777	563	61853										
RASAL1	0	genome.wustl.edu	37	chr12	113553048	113553048	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggatgccagggagttagaaCggaagagggtgttggggtcc	19	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	113553048	113553048	C	G	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.1025	p.R342P	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	159	0	0	93	76	44.97	-	-	-	G	113553048	C	G	113553048	3	3	708	1	0	0	0	0	1	0	0	0	13146	536	19	3	1433	3	RASAL1	12	113553048	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1435930	113553048	20298847	564	61854										
VSIG10	0	genome.wustl.edu	37	chr12	118506394	118506394	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaccatgacatcatccatgTtttgtcccctaatttccaaa	3	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	118506394	118506394	T	G	SNP	VSIG10	ENST00000359236	human	ensembl	69_37n	-1	known	missense	c.1355	p.N452T	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG10	HGNC	ENSG00000176834	135	0	0	87	67	43.51	-	-	-	G	118506394	T	G	118506394	3	3	708	1	0	0	0	0	1	0	0	0	17320	1725	60	5	275	5	VSIG10	12	118506394	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4953346	118506394	15345501	565	61855										
MLEC	0	genome.wustl.edu	37	chr12	121132901	121132901	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtttcccttttcctaggggTactatgacaatcccaaggtc	8	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	121132901	121132901	T	C	SNP	MLEC	ENST00000228506	human	ensembl	69_37n	1	known	missense	c.595	p.Y199H	1.000	pfam_Malectin	pfam_Malectin	-	no_errors	MLEC	HGNC	ENSG00000110917	279	0	0	178	138	43.26	-	-	-	C	121132901	T	C	121132901	3	2	708	1	0	0	0	0	1	0	0	0	9684	1638	57	5	609	5	MLEC	12	121132901	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2626507	121132901	12718994	566	61856										
ORAI1	0	genome.wustl.edu	37	chr12	122079541	122079541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctgacgcccggcagccacTatgcctaggcccatgtggtc	11	17	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	122079541	122079541	T	C	SNP	ORAI1	ENST00000330079	human	ensembl	69_37n	1	known	missense	c.904	p.Y302H	1.000	NULL	pfam_CRAC_channel,superfamily_FH2_actin-bd	-	no_errors	ORAI1	HGNC	ENSG00000182500	16	0	0	4	7	63.64	-	-	-	C	122079541	T	C	122079541	3	2	708	1	0	0	0	0	1	0	0	0	11330	1522	53	5	910	5	ORAI1	12	122079541	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	946640	122079541	11772354	567	61857										
WDR66	0	genome.wustl.edu	37	chr12	122399920	122399920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaggagctacaaagaccacCtggaagtcctggacattcac	9	12	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	122399920	122399920	C	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.2344	p.L782M	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	50	0	0	35	30	46.15	-	-	-	A	122399920	C	A	122399920	3	1	708	1	0	0	0	0	1	0	0	0	17414	680	24	4	2398	4	WDR66	12	122399920	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	320379	122399920	11451975	568	61858										
ZCCHC8	0	genome.wustl.edu	37	chr12	122966592	122966592	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcttctccacaggcatccaTatactcttttctcttttcac	3	14	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	122966592	122966592	T	C	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.775	p.M259V	0.466	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	94	0	0	65	63	49.22	-	-	-	C	122966592	T	C	122966592	3	2	708	1	0	0	0	0	1	0	0	0	17690	1406	49	5	1372	5	ZCCHC8	12	122966592	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	566672	122966592	10885303	569	61859										
PITPNM2	0	genome.wustl.edu	37	chr12	123471302	123471302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agttgtgctgggccagccacGccaccacccgctgcttctgc	11	17	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	123471302	123471302	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	69_37n	-1	known	missense	c.3488	p.A1163V	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975	58	0	0	12	8	40	-	-	-	A	123471302	G	A	123471302	3	1	708	1	0	0	0	0	1	0	0	0	12025	1087	38	1	573	1	PITPNM2	12	123471302	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	504710	123471302	10380593	570	61860										
GTF2H3	0	genome.wustl.edu	37	chr12	124130032	124130032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaaatgcatagatgccgtgAtggtgctgggaaattcgcat	12	8	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	124130032	124130032	A	G	SNP	GTF2H3	ENST00000543341	human	ensembl	69_37n	1	known	missense	c.124	p.M42V	1.000	pfam_TF_Tfb4,tigrfam_TF_Tfb4	pfam_TF_Tfb4,tigrfam_TF_Tfb4	-	no_errors	GTF2H3	HGNC	ENSG00000111358	159	0	0	115	67	36.81	-	-	-	G	124130032	A	G	124130032	3	3	708	1	0	0	0	0	1	0	0	0	6915	333	12	5	134	5	GTF2H3	12	124130032	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	658730	124130032	9721863	571	61861										
AACS	0	genome.wustl.edu	37	chr12	125558450	125558450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgacttgtaccattggtcCgttgagtcatattcagactt	9	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	12	125558450	125558450	C	T	SNP	AACS	ENST00000316519	human	ensembl	69_37n	1	known	silent	c.162	p.S54	0.140	pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	166	0	0	178	38	17.59	-	-	-	T	125558450	C	T	125558450	2	4	708	1	0	0	0	0	0	0	0	1	9	639	23	1		1	AACS	12	125558450	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1428418	125558450	8293445	572	61862										
CRYL1	0	genome.wustl.edu	37	chr13	20987466	20987466	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caggggtccaatgaatgcatAccgcatgcccaacccttctg	9	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	20987466	20987466	A	G	SNP	CRYL1	ENST00000298248	human	ensembl	69_37n	-1	known	missense	c.694	p.Y232H	0.999	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	CRYL1	HGNC	ENSG00000165475	78	0	0	62	36	36.36	-	-	-	G	20987466	A	G	20987466	3	3	708	1	0	0	0	0	1	0	0	0	3950	391	14	5	277	5	CRYL1	13	20987466	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		20987466	94182412	573	61863										
N4BP2L2	0	genome.wustl.edu	37	chr13	33110048	33110048	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtccatacaatgatctttccAgcatctttctctgacttcac	4	13	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	33110048	33110048	A	G	SNP	N4BP2L2	ENST00000267068	human	ensembl	69_37n	-1	known	missense	c.1117	p.W373R	0.985	NULL	pfam_Zeta_toxin_domain	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	67	0	0	85	51	37.23	-	-	-	G	33110048	A	G	33110048	3	3	708	1	0	0	0	0	1	0	0	0	10184	188	7	5	2515	5	N4BP2L2	13	33110048	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	12122582	33110048	82059830	574	61864										
SOHLH2	0	genome.wustl.edu	37	chr13	36748865	36748865	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgggagtcaaatacctgggcCataacggctggagagatttt	13	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	36748865	36748865	C	G	SNP	SOHLH2	ENST00000554962	human	ensembl	69_37n	-1	known	missense	c.1014	p.M338I	0.197	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH2	HGNC	ENSG00000120669	84	0	0	104	38	26.76	-	-	-	G	36748865	C	G	36748865	3	3	708	1	0	0	0	0	1	0	0	0	15013	594	21	4	514	4	SOHLH2	13	36748865	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	3638817	36748865	78421013	575	61865										
KBTBD6	0	genome.wustl.edu	37	chr13	41704703	41704703	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcagagtctggctcactgaAtccacctaagtcccattcag	7	14	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	41704703	41704703	A	T	SNP	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	missense	c.1945	p.F649I	0.980	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	98	0	0	101	15	12.93	-	-	-	T	41704703	A	T	41704703	3	4	708	1	0	0	0	0	1	0	0	0	8051	101	4	5	83	5	KBTBD6	13	41704703	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4955838	41704703	73465175	576	61866										
KBTBD7	0	genome.wustl.edu	37	chr13	41767525	41767525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcaataacgtccaggcagTacttcttcacgatgggcttg	9	11	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	41767525	41767525	T	C	SNP	KBTBD7	ENST00000379483	human	ensembl	69_37n	-1	known	missense	c.869	p.Y290C	1.000	pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD7	HGNC	ENSG00000120696	55	0	0	76	11	12.64	-	-	-	C	41767525	T	C	41767525	3	2	708	1	0	0	0	0	1	0	0	0	8052	1638	57	5	1189	5	KBTBD7	13	41767525	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	62822	41767525	73402353	577	61867										
MED4	0	genome.wustl.edu	37	chr13	48660424	48660424	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctctgtcaacttaccagtatTtgttctgcttcctttagctg	6	11	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	48660424	48660424	T	G	SNP	MED4	ENST00000258648	human	ensembl	69_37n	-1	known	missense	c.357	p.Q119H	0.325	pfam_Mediator_Med4	pfam_Mediator_Med4	-	no_errors	MED4	HGNC	ENSG00000136146	217	0	0	215	48	18.18	-	-	-	G	48660424	T	G	48660424	3	3	708	1	0	0	0	0	1	0	0	0	9521	1838	64	5	475	5	MED4	13	48660424	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6892899	48660424	66509454	578	61868										
MED4	0	genome.wustl.edu	37	chr13	48660516	48660516	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacttgcatttcatgatgaaTttttccctgattaagtgcca	6	8	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	48660516	48660516	T	G	SNP	MED4	ENST00000258648	human	ensembl	69_37n	-1	known	missense	c.265	p.I89L	0.997	pfam_Mediator_Med4	pfam_Mediator_Med4	-	no_errors	MED4	HGNC	ENSG00000136146	181	0	0	179	42	19	-	-	-	G	48660516	T	G	48660516	3	3	708	1	0	0	0	0	1	0	0	0	9521	1493	52	5	567	5	MED4	13	48660516	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	92	48660516	66509362	579	61869										
INTS6	0	genome.wustl.edu	37	chr13	51957870	51957870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcactacaggatgagatgtaCgaggtggctaaaggggaaag	15	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	51957870	51957870	C	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.902	p.R301H	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	63	0	0	51	31	37.8	-	-	-	T	51957870	C	T	51957870	3	4	708	1	0	0	0	0	1	0	0	0	7836	536	19	1	1805	1	INTS6	13	51957870	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	3297354	51957870	63212008	580	61870										
PCDH17	0	genome.wustl.edu	37	chr13	58206872	58206872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgcagcaagtcgggtagctaCcgggtgctggagaactccgc	15	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	58206872	58206872	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	69_37n	1	known	silent	c.192	p.Y64	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946	20	0	0	13	11	45.83	-	-	-	T	58206872	C	T	58206872	2	4	708	1	0	0	0	0	0	0	0	1	11585	518	18	4		4	PCDH17	13	58206872	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	6249002	58206872	56963006	581	61871										
PCDH20	0	genome.wustl.edu	37	chr13	61987885	61987885	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggccaggctgaaggagagaGgggggttccactcagcaccg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	61987885	61987885	G	-	DEL	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	frame_shift_del	c.347	p.P116fs	0.967	pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	19	0	0	13	5	27.78	-	-	-	-	61987885	G	-	61987885	7	5	708	1	0	1	0	1	0	0	0	0	11588	1000	35	0	2512	0	PCDH20	13	61987885	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	3781013	61987885	53181993	582	61872										
RBM26	0	genome.wustl.edu	37	chr13	79932450	79932450	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaatcgactaaaatgttcatTaagtttgctgatattattta	5	4	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	79932450	79932450	T	G	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	missense	c.1648	p.N550H	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	89	0	0	113	39	25.66	-	-	-	G	79932450	T	G	79932450	3	3	708	1	0	0	0	0	1	0	0	0	13209	1754	61	5	1338	5	RBM26	13	79932450	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	17944565	79932450	35237428	583	61873										
ABHD13	0	genome.wustl.edu	37	chr13	108881759	108881759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataaattccaggatgtattgCtttattttccagaacagcca	6	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	108881759	108881759	C	T	SNP	ABHD13	ENST00000375898	human	ensembl	69_37n	1	known	missense	c.193	p.L65F	1.000	NULL	pfam_AB_hydrolase_1,pfam_AXE1	-	no_errors	ABHD13	HGNC	ENSG00000139826	95	0	0	61	52	46.02	-	-	-	T	108881759	C	T	108881759	3	4	708	1	0	0	0	0	1	0	0	0	78	797	28	4	195	4	ABHD13	13	108881759	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	28949309	108881759	6288119	584	61874										
DCUN1D2	0	genome.wustl.edu	37	chr13	114138363	114138363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgtccttctgagacgatttAagcttatgctttgggatgca	10	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	13	114138363	114138363	A	G	SNP	DCUN1D2	ENST00000438545	human	ensembl	69_37n	-1	known	missense	c.185	p.L62S	0.928	superfamily_UBA-like	pfam_PONY_dom,superfamily_UBA-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DCUN1D2	HGNC	ENSG00000150401	39	0	0	31	26	45.61	-	-	-	G	114138363	A	G	114138363	3	3	708	1	0	0	0	0	1	0	0	0	4345	349	13	5	791	5	DCUN1D2	13	114138363	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5256604	114138363	1031515	585	61875										
OR4L1	0	genome.wustl.edu	37	chr14	20528647	20528647	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaggggtttgcgatactttcAtggataattggttttttaca	10	4	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	20528647	20528647	A	G	SNP	OR4L1	ENST00000315683	human	ensembl	69_37n	1	known	silent	c.444	p.S148	0.986	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4L1	HGNC	ENSG00000176246	90	0	0	74	47	38.84	-	-	-	G	20528647	A	G	20528647	2	3	708	1	0	0	0	0	0	0	0	1	11147	204	8	5		5	OR4L1	14	20528647	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		20528647	86820893	586	61876										
RNASE6	0	genome.wustl.edu	37	chr14	21250102	21250102	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgctgtctgtgatttgctcAgcattgtctgcaaaaatcgt	9	9	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	21250102	21250102	A	G	SNP	RNASE6	ENST00000304677	human	ensembl	69_37n	1	known	missense	c.244	p.S82G	0.001	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE6	HGNC	ENSG00000169413	136	0	0	89	51	36.17	-	-	-	G	21250102	A	G	21250102	3	3	708	1	0	0	0	0	1	0	0	0	13493	188	7	5	246	5	RNASE6	14	21250102	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	721455	21250102	86099438	587	61877										
RPGRIP1	0	genome.wustl.edu	37	chr14	21770705	21770705	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttaaggagcatgcgacaaaTgaaaacagaggtgaagtagc	12	5	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	21770705	21770705	T	C	SNP	RPGRIP1	ENST00000206660	human	ensembl	69_37n	1	known	silent	c.549	p.N183	0.025	NULL	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	60	0	0	30	18	37.5	-	-	-	C	21770705	T	C	21770705	2	2	708	1	0	0	0	0	0	0	0	1	13635	1461	51	5		5	RPGRIP1	14	21770705	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	520603	21770705	85578835	588	61878										
ACIN1	0	genome.wustl.edu	37	chr14	23532278	23532278	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcgagttaaggtatctcctaAagtcactatcaagaagacca	7	9	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	23532278	23532278	A	G	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	silent	c.2917	p.L973	0.997	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	50	0	0	37	25	40.32	-	-	-	G	23532278	A	G	23532278	2	3	708	1	0	0	0	0	0	0	0	1	142	11	1	5		5	ACIN1	14	23532278	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1761573	23532278	83817262	589	61879										
RIPK3	0	genome.wustl.edu	37	chr14	24807202	24807202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agccaatgaaggccggttctGcctgttgcacactgcttcgt	11	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	24807202	24807202	G	T	SNP	RIPK3	ENST00000216274	human	ensembl	69_37n	-1	known	missense	c.709	p.Q237K	0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK3	HGNC	ENSG00000129465	33	0	0	18	18	50	-	-	-	T	24807202	G	T	24807202	3	4	708	1	0	0	0	0	1	0	0	0	13468	1328	46	4	867	4	RIPK3	14	24807202	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1274924	24807202	82542338	590	61880										
EAPP	0	genome.wustl.edu	37	chr14	35005482	35005482	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catccacttcatcctcagagCtagcatacatttaaatcaaa	3	12	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	35005482	35005482	C	T	SNP	EAPP	ENST00000250454	human	ensembl	69_37n	-1	known	splice_site	c.75-1	e2-1	1.000	-	-	-	no_errors	EAPP	HGNC	ENSG00000129518	55	0	0	110	31	21.99	-	-	-	T	35005482	C	T	35005482	5	4	708	1	0	0	0	0	0	0	1	0	4912	811	28	4	803	4	EAPP	14	35005482	Splice_Site	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	10198280	35005482	72344058	591	61881										
RALGAPA1	0	genome.wustl.edu	37	chr14	36096681	36096681	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaaagtccatcttttacggTtatatcttctaagcattcat	5	8	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	36096681	36096681	T	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.5095	p.T1699A	0.369	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	50	0	0	49	28	36.36	-	-	-	C	36096681	T	C	36096681	3	2	708	1	0	0	0	0	1	0	0	0	13096	1725	60	5	1341	5	RALGAPA1	14	36096681	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1091199	36096681	71252859	592	61882										
NID2	0	genome.wustl.edu	37	chr14	52507555	52507555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaatgtaacttccatgtcatGggtaaaggcagcacctggag	12	8	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	52507555	52507555	G	T	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.1840	p.H614N	0.987	pfam_G2_nidogen/fibulin_G2F,superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	99	0	0	68	48	41.03	-	-	-	T	52507555	G	T	52507555	3	4	708	1	0	0	0	0	1	0	0	0	10487	1348	47	4	2347	4	NID2	14	52507555	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	16410874	52507555	54841985	593	61883										
C14orf101	0	genome.wustl.edu	37	chr14	57052487	57052487	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atttttccgtaggttgcccaTcctcctggctatcctttgtt	7	12	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	57052487	57052487	T	C	SNP	C14orf101	ENST00000261556	human	ensembl	69_37n	1	known	silent	c.201	p.H67	1.000	pfam_DUF2723	pfam_DUF2723	-	no_errors	C14orf101	HGNC	ENSG00000070269	183	1	0.54	139	84	37.67	-	-	-	C	57052487	T	C	57052487	2	2	708	1	0	0	0	0	0	0	0	1	1746	1432	50	5		5	C14orf101	14	57052487	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4544932	57052487	50297053	594	61884										
DAAM1	0	genome.wustl.edu	37	chr14	59789672	59789672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctcaactttctaaagaccaTggactacgagacctcagagt	7	12	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	59789672	59789672	T	C	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.503	p.M168T	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	94	0	0	70	36	33.96	-	-	-	C	59789672	T	C	59789672	3	2	708	1	0	0	0	0	1	0	0	0	4247	1464	51	5	521	5	DAAM1	14	59789672	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2737185	59789672	47559868	595	61885										
TRMT5	0	genome.wustl.edu	37	chr14	61442326	61442326	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccagagaaatgcctaacacAgctccagccctttgccgaac	7	15	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	61442326	61442326	A	G	SNP	TRMT5	ENST00000261249	human	ensembl	69_37n	-1	known	silent	c.1311	p.A437	0.034	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT5	HGNC	ENSG00000126814	106	0	0	78	60	43.48	-	-	-	G	61442326	A	G	61442326	2	3	708	1	0	0	0	0	0	0	0	1	16663	175	7	5		5	TRMT5	14	61442326	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1652654	61442326	45907214	596	61886										
SYNE2	0	genome.wustl.edu	37	chr14	64678806	64678806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgacgccgatgacaagatgcGccaactgaatgtgagggctg	14	9	0	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	64678806	64678806	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.18851	p.R6284H	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	59	0	0	58	29	33.33	-	-	-	A	64678806	G	A	64678806	3	1	708	1	0	0	0	0	1	0	0	0	15538	1087	38	1	19261	1	SYNE2	14	64678806	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3236480	64678806	42670734	597	61887										
AKAP5	0	genome.wustl.edu	37	chr14	64936324	64936324	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctctagtcaagaatgctatTcagttgtcaatagaacagct	7	8	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	64936324	64936324	T	A	SNP	AKAP5	ENST00000320636	human	ensembl	69_37n	1	known	silent	c.1212	p.I404	1.000	NULL	pfam_Pkinase-A_anch_WSK-motif	-	no_errors	AKAP5	HGNC	ENSG00000179841	41	0	0	28	22	44	-	-	-	A	64936324	T	A	64936324	2	1	708	1	0	0	0	0	0	0	0	1	454	1771	62	5		5	AKAP5	14	64936324	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	257518	64936324	42413216	598	61888										
ACTN1	0	genome.wustl.edu	37	chr14	69341721	69341721	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcgcggcgcagctcgtccAtggtaatgtagttctgcgag	14	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	69341721	69341721	A	G	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	missense	c.2600	p.M867T	0.956	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	23	0	0	12	6	33.33	-	-	-	G	69341721	A	G	69341721	3	3	708	1	0	0	0	0	1	0	0	0	204	217	8	5	148	5	ACTN1	14	69341721	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4405397	69341721	38007819	599	61889										
ACTN1	0	genome.wustl.edu	37	chr14	69358906	69358906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtgcaggcgccggtagtccCggaagtcctccagcttctgt	13	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	69358906	69358906	C	T	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	missense	c.950	p.R317Q	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	72	0	0	77	11	12.5	-	-	-	T	69358906	C	T	69358906	3	4	708	1	0	0	0	0	1	0	0	0	204	652	23	1	1846	1	ACTN1	14	69358906	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	17185	69358906	37990634	600	61890										
DCAF4	0	genome.wustl.edu	37	chr14	73408476	73408476	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccaggatgggatttaatgcAtcttccatgctacgaaaaag	10	8	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	73408476	73408476	A	T	SNP	DCAF4	ENST00000358377	human	ensembl	69_37n	1	known	silent	c.375	p.A125	0.839	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599	112	0	0	92	55	37.41	-	-	-	T	73408476	A	T	73408476	2	4	708	1	0	0	0	0	0	0	0	1	4302	204	8	5		5	DCAF4	14	73408476	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4049570	73408476	33941064	601	61891										
MLH3	0	genome.wustl.edu	37	chr14	75516229	75516229	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaaggtttccatattcacccTgacagccacacattttgctt	6	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	75516229	75516229	T	C	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	missense	c.130	p.R44G	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	44	0	0	51	23	31.08	-	-	-	C	75516229	T	C	75516229	3	2	708	1	0	0	0	0	1	0	0	0	9689	1579	55	5	4279	5	MLH3	14	75516229	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2107753	75516229	31833311	602	61892										
EML5	0	genome.wustl.edu	37	chr14	89124579	89124579	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcttcactatcacaaggccTtttttctcgatagccttcca							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	89124579	89124579	T	-	DEL	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	frame_shift_del	c.3829	p.R1277fs	1.000	NULL	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	73	0	0	51	40	43.96	-	-	-	-	89124579	T	-	89124579	7	5	708	1	0	1	0	1	0	0	0	0	5137	1608	56	0	2176	0	EML5	14	89124579	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	13608350	89124579	18224961	603	61893										
CPSF2	0	genome.wustl.edu	37	chr14	92627467	92627467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttatctaaggttcctggacaTcagtcagtttttatgaatga	8	6	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	92627467	92627467	T	C	SNP	CPSF2	ENST00000555244	human	ensembl	69_37n	1	novel	missense	c.683	p.I228T	0.825	NULL	pfam_RMMBL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPSF2	HGNC	ENSG00000165934	147	0	0	179	40	18.26	-	-	-	C	92627467	T	C	92627467	3	2	708	1	0	0	0	0	1	0	0	0	3855	1432	50	5	2183	5	CPSF2	14	92627467	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3502888	92627467	14722073	604	61894										
GOLGA5	0	genome.wustl.edu	37	chr14	93263950	93263950	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acagatttgatatatcagacTggacctaaatctacgtatat	6	7	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	93263950	93263950	T	G	SNP	GOLGA5	ENST00000163416	human	ensembl	69_37n	1	known	silent	c.168	p.T56	0.003	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455	67	0	0	104	32	23.53	-	-	-	G	93263950	T	G	93263950	2	3	708	1	0	0	0	0	0	0	0	1	6608	1567	55	5		5	GOLGA5	14	93263950	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	636483	93263950	14085590	605	61895										
YY1	0	genome.wustl.edu	37	chr14	100742955	100742955	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaaaactaaaacgacaccaActggttcatactggagagaa	7	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	100742955	100742955	A	C	SNP	YY1	ENST00000262238	human	ensembl	69_37n	1	known	missense	c.1032	p.Q344H	0.577	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811	74	0	0	118	31	20.81	-	-	-	C	100742955	A	C	100742955	3	2	708	1	0	0	0	0	1	0	0	0	17604	40	2	5	1046	5	YY1	14	100742955	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7479005	100742955	6606585	606	61896										
RTL1	0	genome.wustl.edu	37	chr14	101350605	101350605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaggtcttgcattcggaagTacagcgagatgatggacctc	13	8	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	101350605	101350605	T	C	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.521	p.Y174C	0.708	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	134	0	0	166	56	25.23	-	-	-	C	101350605	T	C	101350605	3	2	708	1	0	0	0	0	1	0	0	0	13810	1638	57	5	3559	5	RTL1	14	101350605	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	607650	101350605	5998935	607	61897										
DYNC1H1	0	genome.wustl.edu	37	chr14	102509062	102509062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctgaggacgttcagcagcAttcccgtctcacggatatgc	11	12	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	102509062	102509062	A	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.12490	p.I4164V	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	47	0	0	71	20	21.98	-	-	-	G	102509062	A	G	102509062	3	3	708	1	0	0	0	0	1	0	0	0	4876	217	8	5	12764	5	DYNC1H1	14	102509062	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1158457	102509062	4840478	608	61898										
DYNC1H1	0	genome.wustl.edu	37	chr14	102516130	102516130	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagtatgtggcccaggccaAcagctggtccctggaggagc	15	12	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	102516130	102516130	A	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.13595	p.N4532S	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	19	0	0	24	5	17.24	-	-	-	G	102516130	A	G	102516130	3	3	708	1	0	0	0	0	1	0	0	0	4876	43	2	5	13897	5	DYNC1H1	14	102516130	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7068	102516130	4833410	609	61899										
TNFAIP2	0	genome.wustl.edu	37	chr14	103597436	103597436	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggagagaggcaagcagctgaCgaattacagggccaatgtta	14	7	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	103597436	103597436	C	A	SNP	TNFAIP2	ENST00000333007	human	ensembl	69_37n	1	known	missense	c.1247	p.T416K	0.000	pfam_Sec6	pfam_Sec6	-	no_errors	TNFAIP2	HGNC	ENSG00000185215	63	0	0	80	22	21.57	-	-	-	A	103597436	C	A	103597436	3	1	708	1	0	0	0	0	1	0	0	0	16368	536	19	3	1269	3	TNFAIP2	14	103597436	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1081306	103597436	3752104	610	61900										
AHNAK2	0	genome.wustl.edu	37	chr14	105410652	105410652	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctttgaggccggctccctcGggcacctggccctccgggag	14	16	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	105410652	105410652	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.11136	p.P3712	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	82	0	0	88	42	32.06	-	-	-	T	105410652	G	T	105410652	2	4	708	1	0	0	0	0	0	0	0	1	415	1103	39	3		3	AHNAK2	14	105410652	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1813216	105410652	1938888	611	61901										
AHNAK2	0	genome.wustl.edu	37	chr14	105419812	105419812	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctgtcagaatttgttccTtttttaagcgtttttcatcg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	14	105419812	105419812	T	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.1976	p.K659fs	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	180	0	0	207	60	22.06	-	-	-	-	105419812	T	-	105419812	7	5	708	1	0	1	0	1	0	0	0	0	415	1609	56	0	15415	0	AHNAK2	14	105419812	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	9160	105419812	1929728	612	61902										
HERC2	0	genome.wustl.edu	37	chr15	28525309	28525309	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctattcaaggcaatgaaataGcgctccaagatcaccagcct	7	12	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	28525309	28525309	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.447	p.R149	0.883	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	104	0	0	68	15	17.86	-	-	-	A	28525309	G	A	28525309	2	1	708	1	0	0	0	0	0	0	0	1	7109	958	34	4		4	HERC2	15	28525309	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		28525309	74006083	613	61903										
OTUD7A	0	genome.wustl.edu	37	chr15	31776728	31776728	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcgtcttgctgaagctgcccAgcttgttggccacggagtcg	14	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	31776728	31776728	A	G	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	missense	c.1571	p.L524P	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	78	0	0	45	28	38.36	-	-	-	G	31776728	A	G	31776728	3	3	708	1	0	0	0	0	1	0	0	0	11391	188	7	5	1234	5	OTUD7A	15	31776728	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3251419	31776728	70754664	614	61904										
GOLGA8A	0	genome.wustl.edu	37	chr15	34673938	34673938	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agccccgagctcctggggggCtggggctcctggactgggtt	18	12	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	34673938	34673938	C	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.1663	p.A555S	0.054	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	23	0	0	9	3	25	-	-	-	A	34673938	C	A	34673938	3	1	708	1	0	0	0	0	1	0	0	0	6613	797	28	4	246	4	GOLGA8A	15	34673938	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2897210	34673938	67857454	615	61905										
FSIP1	0	genome.wustl.edu	37	chr15	40057882	40057882	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctttgccaatattttatCaagttttttcatcttctgaa	3	7	5	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	40057882	40057882	C	G	SNP	FSIP1	ENST00000350221	human	ensembl	69_37n	-1	known	missense	c.376	p.D126H	1.000	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	188	0	0	175	27	13.37	-	-	-	G	40057882	C	G	40057882	3	3	708	1	0	0	0	0	1	0	0	0	6123	826	29	2	1405	2	FSIP1	15	40057882	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	5383944	40057882	62473510	616	61906										
TYRO3	0	genome.wustl.edu	37	chr15	41854803	41854803	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgccacccaatgccccttTccaactgtcttgtgaggctg	9	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	41854803	41854803	T	C	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	1	known	missense	c.467	p.F156S	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	54	0	0	39	43	51.81	-	-	-	C	41854803	T	C	41854803	3	2	708	1	0	0	0	0	1	0	0	0	16911	1783	62	5	481	5	TYRO3	15	41854803	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1796921	41854803	60676589	617	61907										
TYRO3	0	genome.wustl.edu	37	chr15	41854888	41854888	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acgaagatcgggggacccgcTccctctccatctgttttaaa	9	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	41854888	41854888	T	G	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	1	known	silent	c.552	p.A184	0.130	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	38	0	0	53	6	10.17	-	-	-	G	41854888	T	G	41854888	2	3	708	1	0	0	0	0	0	0	0	1	16911	1538	54	5		5	TYRO3	15	41854888	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	85	41854888	60676504	618	61908										
TMEM87A	0	genome.wustl.edu	37	chr15	42536296	42536296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttgatgattcctttgaggAtgaaatgccaatatgtacaa	8	5	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	42536296	42536296	A	G	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.574	p.S192P	0.977	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	116	0	0	73	63	46.32	-	-	-	G	42536296	A	G	42536296	3	3	708	1	0	0	0	0	1	0	0	0	16305	333	12	5	1149	5	TMEM87A	15	42536296	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	681408	42536296	59995096	619	61909										
TP53BP1	0	genome.wustl.edu	37	chr15	43739574	43739574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attcactcaccaataggagtActgtgtctcttgggctccaa	8	11	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	43739574	43739574	A	G	SNP	TP53BP1	ENST00000411772	human	ensembl	69_37n	-1	known	missense	c.550	p.Y184H	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TP53BP1	HGNC	ENSG00000067369	113	0	0	125	33	20.89	-	-	-	G	43739574	A	G	43739574	3	3	708	1	0	0	0	0	1	0	0	0	16479	388	14	5	3171	5	TP53BP1	15	43739574	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1203278	43739574	58791818	620	61910										
MAP1A	0	genome.wustl.edu	37	chr15	43816227	43816227	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgaggaccaatctgtggcCtcacttacagctccccagac	9	15	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	43816227	43816227	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.2556	p.A852	0.991	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	46	0	0	59	9	13.24	-	-	-	A	43816227	C	A	43816227	2	1	708	1	0	0	0	0	0	0	0	1	9298	668	24	4		4	MAP1A	15	43816227	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	76653	43816227	58715165	621	61911										
FRMD5	0	genome.wustl.edu	37	chr15	44211718	44211718	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaacttcacacggaagcacaTggtgaatggaggctgggctg	14	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	44211718	44211718	T	C	SNP	FRMD5	ENST00000417257	human	ensembl	69_37n	-1	known	missense	c.268	p.M90V	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin	pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD5	HGNC	ENSG00000171877	69	0	0	73	18	19.78	-	-	-	C	44211718	T	C	44211718	3	2	708	1	0	0	0	0	1	0	0	0	6102	1464	51	5	1488	5	FRMD5	15	44211718	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	395491	44211718	58319674	622	61912										
TCF12	0	genome.wustl.edu	37	chr15	57524621	57524621	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggcaaccttcattcacatgAccgcttggtaggctataaca	8	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	57524621	57524621	A	G	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	missense	c.818	p.D273G	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	80	0	0	74	33	30.84	-	-	-	G	57524621	A	G	57524621	3	3	708	1	0	0	0	0	1	0	0	0	15782	275	10	5	925	5	TCF12	15	57524621	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	13312903	57524621	45006771	623	61913										
FAM63B	0	genome.wustl.edu	37	chr15	59064339	59064339	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtatcacatcaagtggatcCagtggaaggaagagaacaca	11	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	59064339	59064339	C	T	SNP	FAM63B	ENST00000559228	human	ensembl	69_37n	1	known	nonsense	c.745	p.Q249*	1.000	NULL	pfam_DUF544	-	no_errors	FAM63B	HGNC	ENSG00000128923	96	0	0	63	82	56.55	-	-	-	T	59064339	C	T	59064339	4	4	708	1	0	0	0	0	0	1	0	0	5642	595	21	4	747	4	FAM63B	15	59064339	Nonsense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1539718	59064339	43467053	624	61914										
TLN2	0	genome.wustl.edu	37	chr15	62990999	62990999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaccatcaacacaagcatgcAcgccgtccagcaggcccagg	10	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	62990999	62990999	A	G	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.1520	p.H507R	0.999	pfam_Talin_cent,superfamily_Talin_cent	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	42	0	0	38	43	53.09	-	-	-	G	62990999	A	G	62990999	3	3	708	1	0	0	0	0	1	0	0	0	16043	159	6	5	1570	5	TLN2	15	62990999	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3926660	62990999	39540393	625	61915										
TLN2	0	genome.wustl.edu	37	chr15	63047807	63047807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgcatcgcctcatccaagaCggccaacccagtagccaaga	8	17	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	63047807	63047807	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	missense	c.4553	p.T1518M	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	51	0	0	18	33	64.71	-	-	-	T	63047807	C	T	63047807	3	4	708	1	0	0	0	0	1	0	0	0	16043	536	19	1	4687	1	TLN2	15	63047807	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	56808	63047807	39483585	626	61916										
PDCD7	0	genome.wustl.edu	37	chr15	65421426	65421426	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atttctccaaagcccgtagaAtgtccaccattcttttggta	6	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	65421426	65421426	A	T	SNP	PDCD7	ENST00000204549	human	ensembl	69_37n	-1	known	missense	c.953	p.I318N	1.000	NULL	NULL	-	no_errors	PDCD7	HGNC	ENSG00000090470	222	0	0	252	56	18.12	-	-	-	T	65421426	A	T	65421426	3	4	708	1	0	0	0	0	1	0	0	0	11698	101	4	5	520	5	PDCD7	15	65421426	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2373619	65421426	37109966	627	61917										
IGDCC4	0	genome.wustl.edu	37	chr15	65702618	65702618	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagctgtcccgttctcctccAccgtctgagactccgggtgc	11	16	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	65702618	65702618	A	G	SNP	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	missense	c.461	p.V154A	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	34	0	0	42	19	31.15	-	-	-	G	65702618	A	G	65702618	3	3	708	1	0	0	0	0	1	0	0	0	7623	159	6	5	3363	5	IGDCC4	15	65702618	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	281192	65702618	36828774	628	61918										
DPP8	0	genome.wustl.edu	37	chr15	65777497	65777497	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgactttaggatttgctgtAcctttagaaagagacataaa	9	5	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	65777497	65777497	A	G	SNP	DPP8	ENST00000558559	human	ensembl	69_37n	-1	novel	missense	c.229	p.Y77H	0.999	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_start_codon:pseudogene:no_stop_codon	DPP8	HGNC	ENSG00000074603	75	0	0	53	59	52.68	-	-	-	G	65777497	A	G	65777497	3	3	708	1	0	0	0	0	1	0	0	0	4767	405	14	5	1743	5	DPP8	15	65777497	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	74879	65777497	36753895	629	61919										
DIS3L	0	genome.wustl.edu	37	chr15	66613033	66613033	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aattgcaaccatcctggtggAaaacagtatttcagttattc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	66613033	66613033	A	-	DEL	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	frame_shift_del	c.1289	p.N431fs	1.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	134	0	0	189	85	30.8	-	-	-	-	66613033	A	-	66613033	7	5	708	1	0	1	0	1	0	0	0	0	4572	246	9	0	1323	0	DIS3L	15	66613033	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	835536	66613033	35918359	630	61920										
MAP2K1	0	genome.wustl.edu	37	chr15	66727540	66727540	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcggtgtggtgttcaaggtcTcccacaagccttctggcctg	13	12	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	66727540	66727540	T	G	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	missense	c.256	p.S86A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	55	0	0	117	24	16.9	-	-	-	G	66727540	T	G	66727540	3	3	708	1	0	0	0	0	1	0	0	0	9307	1551	54	5	262	5	MAP2K1	15	66727540	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	114507	66727540	35803852	631	61921										
MYO9A	0	genome.wustl.edu	37	chr15	72146807	72146807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tatacagtccatgcatttcaAtgtagtttatgagcttttcc	6	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	72146807	72146807	A	G	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.6470	p.I2157T	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	76	0	0	116	22	15.94	-	-	-	G	72146807	A	G	72146807	3	3	708	1	0	0	0	0	1	0	0	0	10156	101	4	5	1421	5	MYO9A	15	72146807	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5419267	72146807	30384585	632	61922										
MYO9A	0	genome.wustl.edu	37	chr15	72152111	72152111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggctgtggttttcagacagcActtcttatggcaagcatact	10	9	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	72152111	72152111	A	G	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.6331	p.C2111R	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	114	0	0	134	44	24.58	-	-	-	G	72152111	A	G	72152111	3	3	708	1	0	0	0	0	1	0	0	0	10156	159	6	5	1564	5	MYO9A	15	72152111	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5304	72152111	30379281	633	61923										
C15orf39	0	genome.wustl.edu	37	chr15	75500456	75500456	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acccccacatctgggcccatTggactgcggattctcgctca	9	16	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	75500456	75500456	T	A	SNP	C15orf39	ENST00000565074	human	ensembl	69_37n	1	known	missense	c.1672	p.W558R	0.007	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C15orf39	HGNC	ENSG00000167173	95	0	0	50	44	46.32	-	-	-	A	75500456	T	A	75500456	3	1	708	1	0	0	0	0	1	0	0	0	1805	1800	63	5	2069	5	C15orf39	15	75500456	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3348345	75500456	27030936	634	61924										
IDH3A	0	genome.wustl.edu	37	chr15	78452522	78452522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcagaggctaaagagtccaTggataagaacaagatgggct	12	6	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	78452522	78452522	T	C	SNP	IDH3A	ENST00000299518	human	ensembl	69_37n	1	known	missense	c.263	p.M88T	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3A	HGNC	ENSG00000166411	40	0	0	38	15	28.3	-	-	-	C	78452522	T	C	78452522	3	2	708	1	0	0	0	0	1	0	0	0	7550	1464	51	5	277	5	IDH3A	15	78452522	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2952066	78452522	24078870	635	61925										
DNAJA4	0	genome.wustl.edu	37	chr15	78557162	78557164	+	In_Frame_Del	DEL	GGA	GGA	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgaagcccagcgcgtccccGgaggagatcaagaaggccta							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	78557162	78557164	GGA	-	DEL	DNAJA4	ENST00000394855	human	ensembl	69_37n	1	known	in_frame_del	c.144_146	p.E50in_frame_del	0.007:0.995:0.996	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA4	HGNC	ENSG00000140403	21	0	0	22	9	27.27	-	-	-	-	78557164	GGA	-	78557162	7	5	708	1	0	1	0	1	0	0	0	0	4649	1103	39	0	150	0	DNAJA4	15	78557162	In_Frame_Del	DEL	GGA	TCGA-D8-A1XK-01A-21D-A14K-09	104640	78557162	23974230	636	61926										
DNAJA4	0	genome.wustl.edu	37	chr15	78568072	78568072	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttattacatccaaagcaggTaatgtttcaaagtgtgtttc	8	6	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	78568072	78568072	T	C	SNP	DNAJA4	ENST00000394855	human	ensembl	69_37n	1	known	splice_site	c.964+2	e6+2	0.999	-	-	-	no_errors	DNAJA4	HGNC	ENSG00000140403	139	0	0	82	113	56.5	-	-	-	C	78568072	T	C	78568072	5	2	708	1	0	0	0	0	0	0	1	0	4649	1652	57	5	1043	5	DNAJA4	15	78568072	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	10910	78568072	23963320	637	61927										
BCL2A1	0	genome.wustl.edu	37	chr15	80263166	80263166	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcgtagaagtttcttgatgAgaataccttcaaatgcaaat	8	6	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	80263166	80263166	A	C	SNP	BCL2A1	ENST00000267953	human	ensembl	69_37n	-1	known	missense	c.296	p.L99R	0.457	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Apop_reg_Bcl2Rel,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,prints_Apop_reg_Bcl2Rel,prints_Bcl2_BH,pfscan_Bcl2-like_apoptosis	-	no_errors	BCL2A1	HGNC	ENSG00000140379	83	0	0	107	36	25.17	-	-	-	C	80263166	A	C	80263166	3	2	708	1	0	0	0	0	1	0	0	0	1370	304	11	5	299	5	BCL2A1	15	80263166	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1695094	80263166	22268226	638	61928										
BNC1	0	genome.wustl.edu	37	chr15	83935797	83935798	+	Frame_Shift_Ins	INS	-	-	G													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctggcttgttggatacatINSgggggggatccttagcttac							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	83935797	83935798	-	G	INS	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.226_225	p.M75fs	0.001:0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	57	0	0	60	15	20	-	-	-	G	83935798	-	G	83935797	7	5	708	1	0	1	1	0	0	0	0	0	1479	1464	51	0	2770	0	BNC1	15	83935797	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	3672631	83935797	18595595	639	61929										
SEC11A	0	genome.wustl.edu	37	chr15	85213987	85213987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatagtcattcatgaggatcGtcacaattccaatataagga	8	7	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	85213987	85213987	G	A	SNP	SEC11A	ENST00000268220	human	ensembl	69_37n	-1	known	missense	c.458	p.T153M	0.998	tigrfam_Peptidase_S26B	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Peptidase_S26B,tigrfam_Peptidase_S26B	-	no_errors	SEC11A	HGNC	ENSG00000140612	36	0	0	41	38	48.1	-	-	-	A	85213987	G	A	85213987	3	1	708	1	0	0	0	0	1	0	0	0	14066	1145	40	1	89	1	SEC11A	15	85213987	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1278190	85213987	17317405	640	61930										
ABHD2	0	genome.wustl.edu	37	chr15	89698709	89698709	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctatcggtgcgccgtgctgaAccacctgggtgccctgccca	12	16	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	89698709	89698709	A	G	SNP	ABHD2	ENST00000352732	human	ensembl	69_37n	1	known	missense	c.482	p.N161S	1.000	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526	74	0	0	95	23	19.49	-	-	-	G	89698709	A	G	89698709	3	3	708	1	0	0	0	0	1	0	0	0	82	43	2	5	492	5	ABHD2	15	89698709	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4484722	89698709	12832683	641	61931										
POLG	0	genome.wustl.edu	37	chr15	89876333	89876333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgcccctacttaccaggccGagggggatatggccaccgcc	12	16	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	89876333	89876333	G	A	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.653	p.S218L	0.878	pirsf_DNA-dir_DNA_pol_A_mt_sub,superfamily_RNaseH-like_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	8	0	0	9	4	30.77	-	-	-	A	89876333	G	A	89876333	3	1	708	1	0	0	0	0	1	0	0	0	12274	1059	37	1	3154	1	POLG	15	89876333	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	177624	89876333	12655059	642	61932										
C15orf38	0	genome.wustl.edu	37	chr15	90454024	90454024	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgccgagatacatcgatcagTtctccctccagcaggacacc	8	15	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	90454024	90454024	T	C	SNP	C15orf38	ENST00000357484	human	ensembl	69_37n	-1	known	silent	c.120	p.E40	0.182	pfam_UPF0552	pfam_UPF0552	-	no_errors	C15orf38	HGNC	ENSG00000242498	77	0	0	72	51	41.46	-	-	-	C	90454024	T	C	90454024	2	2	708	1	0	0	0	0	0	0	0	1	1804	1722	60	5		5	C15orf38	15	90454024	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	577691	90454024	12077368	643	61933										
NR2F2	0	genome.wustl.edu	37	chr15	96880700	96880700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagattcggaaagcttttgcTtcgcctcccttccctccgca	8	15	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	96880700	96880700	T	C	SNP	NR2F2	ENST00000394166	human	ensembl	69_37n	1	known	missense	c.1094	p.L365P	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F2	HGNC	ENSG00000185551	78	0	0	157	20	11.3	-	-	-	C	96880700	T	C	96880700	3	2	708	1	0	0	0	0	1	0	0	0	10701	1609	56	5	1151	5	NR2F2	15	96880700	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	6426676	96880700	5650692	644	61934										
LRRK1	0	genome.wustl.edu	37	chr15	101523888	101523888	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acggcagttgtgcaggaattGcttgagtccttaccaggtaa	12	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	101523888	101523888	G	C	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	missense	c.417	p.L139F	0.569	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	49	0	0	107	36	25.17	-	-	-	C	101523888	G	C	101523888	3	2	708	1	0	0	0	0	1	0	0	0	9098	1310	46	4	427	4	LRRK1	15	101523888	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	4643188	101523888	1007504	645	61935										
LRRK1	0	genome.wustl.edu	37	chr15	101593286	101593286	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcaagaactttgctaacgtAccggcaggtaagcgggtccc	11	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	101593286	101593286	A	G	SNP	LRRK1	ENST00000388948	human	ensembl	69_37n	1	known	silent	c.3849	p.V1283	0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	24	0	0	70	10	12.5	-	-	-	G	101593286	A	G	101593286	2	3	708	1	0	0	0	0	0	0	0	1	9098	378	14	5		5	LRRK1	15	101593286	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	69398	101593286	938106	646	61936										
CHSY1	0	genome.wustl.edu	37	chr15	101718063	101718063	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgttggcccagaactgtatTtgctcgacatcgctgaagga	11	9	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	15	101718063	101718063	T	C	SNP	CHSY1	ENST00000254190	human	ensembl	69_37n	-1	known	missense	c.1939	p.N647D	0.998	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873	28	0	0	83	17	17	-	-	-	C	101718063	T	C	101718063	3	2	708	1	0	0	0	0	1	0	0	0	3441	1841	64	5	473	5	CHSY1	15	101718063	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	124777	101718063	813329	647	61937										
NDUFB10	0	genome.wustl.edu	37	chr16	2011613	2011613	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagtggagcagttcacccagGtggccaaggcctaccaggac	13	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	2011613	2011613	G	A	SNP	NDUFB10	ENST00000570172	human	ensembl	69_37n	1	novel	splice_site	c.384+1	e3+1	0.924	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	NDUFB10	HGNC	ENSG00000140990	41	0	0	32	20	38.46	-	-	-	A	2011613	G	A	2011613	5	1	708	1	0	0	0	0	0	0	1	0	10351	1261	44	4	395	4	NDUFB10	16	2011613	Splice_Site	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		2011613	88343140	648	61938										
ABCA3	0	genome.wustl.edu	37	chr16	2369781	2369781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgtggcggcatcggcatggTactccatgatggcccggtcc	15	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	2369781	2369781	T	C	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.674	p.Y225C	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	56	0	0	34	21	36.84	-	-	-	C	2369781	T	C	2369781	3	2	708	1	0	0	0	0	1	0	0	0	33	1638	57	5	4544	5	ABCA3	16	2369781	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	358168	2369781	87984972	649	61939										
SRRM2	0	genome.wustl.edu	37	chr16	2816852	2816852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcacggacacctccagtagCactcaacagttccagaatga	7	13	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	2816852	2816852	C	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.6323	p.A2108E	0.369	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	51	0	0	34	33	49.25	-	-	-	A	2816852	C	A	2816852	3	1	708	1	0	0	0	0	1	0	0	0	15260	710	25	4	6361	4	SRRM2	16	2816852	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	447071	2816852	87537901	650	61940										
PKMYT1	0	genome.wustl.edu	37	chr16	3025624	3025624	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgctgcaggctgggcccgcAcagctccgtctgcaggtaca	13	14	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	3025624	3025624	A	G	SNP	PKMYT1	ENST00000262300	human	ensembl	69_37n	-1	known	missense	c.568	p.C190R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_cat_dom	-	no_errors	PKMYT1	HGNC	ENSG00000127564	17	0	0	6	10	62.5	-	-	-	G	3025624	A	G	3025624	3	3	708	1	0	0	0	0	1	0	0	0	12052	159	6	5	993	5	PKMYT1	16	3025624	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	208772	3025624	87329129	651	61941										
MEFV	0	genome.wustl.edu	37	chr16	3293879	3293879	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagcatgtgcctgagcgccAatcagctccggaactacgga	11	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	3293879	3293879	A	T	SNP	MEFV	ENST00000541159	human	ensembl	69_37n	-1	putative	missense	c.1315	p.W439R	0.000	NULL	pfam_DAPIN,pfam_Znf_B-box,superfamily_DEATH-like,smart_Znf_B-box,pfscan_DAPIN,pfscan_Znf_B-box	-	no_errors	MEFV	HGNC	ENSG00000103313	44	0	0	23	29	55.77	-	-	-	T	3293879	A	T	3293879	3	4	708	1	0	0	0	0	1	0	0	0	9530	126	5	5	580	5	MEFV	16	3293879	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	268255	3293879	87060874	652	61942										
CREBBP	0	genome.wustl.edu	37	chr16	3781803	3781803	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgcttctccatggtggcatAcagcttctgggacaggtcat	12	10	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	3781803	3781803	A	G	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.4864	p.Y1622H	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	450	1	0.22	250	191	43.31	-	-	-	G	3781803	A	G	3781803	3	3	708	1	0	0	0	0	1	0	0	0	3891	391	14	5	2476	5	CREBBP	16	3781803	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	487924	3781803	86572950	653	61943										
EMP2	0	genome.wustl.edu	37	chr16	10626885	10626885	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtcacgggatagaatttcgcGtttttgtcgtgaatgtcttc	11	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	10626885	10626885	G	A	SNP	EMP2	ENST00000359543	human	ensembl	69_37n	-1	known	silent	c.381	p.N127	0.000	pfam_PMP22/EMP/MP20/Claudin,prints_EMP_2	pfam_PMP22/EMP/MP20/Claudin,prints_EMP_2,prints_PMP22_EMP_MP20	-	no_errors	EMP2	HGNC	ENSG00000213853	74	0	0	91	23	20.18	-	-	-	A	10626885	G	A	10626885	2	1	708	1	0	0	0	0	0	0	0	1	5139	1136	40	1		1	EMP2	16	10626885	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	6845082	10626885	79727868	654	61944										
TEKT5	0	genome.wustl.edu	37	chr16	10775958	10775958	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgagcttttgtcttcgaggTccctctccagcacgtgctga	10	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	10775958	10775958	T	C	SNP	TEKT5	ENST00000283025	human	ensembl	69_37n	-1	known	missense	c.755	p.D252G	0.996	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	122	0	0	126	48	27.59	-	-	-	C	10775958	T	C	10775958	3	2	708	1	0	0	0	0	1	0	0	0	15851	1667	58	5	718	5	TEKT5	16	10775958	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	149073	10775958	79578795	655	61945										
CIITA	0	genome.wustl.edu	37	chr16	11016271	11016271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctcttgccagcgtccagTacaacaagttcacggctgcc	8	14	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	11016271	11016271	T	C	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	missense	c.3241	p.Y1081H	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	61	0	0	31	17	35.42	-	-	-	C	11016271	T	C	11016271	3	2	708	1	0	0	0	0	1	0	0	0	3457	1638	57	5	3311	5	CIITA	16	11016271	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	240313	11016271	79338482	656	61946										
TNFRSF17	0	genome.wustl.edu	37	chr16	12061488	12061488	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcaggactggtgatgaaatTattcttccgagaggcctcga	12	8	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	12061488	12061488	T	C	SNP	TNFRSF17	ENST00000053243	human	ensembl	69_37n	1	known	silent	c.339	p.I113	0.000	pirsf_TNFR_17,prints_TNFR_17	pfam_BCMA_Tall-1-bd,pirsf_TNFR_17,prints_TNFR_17,prints_TNFR_13C	-	no_errors	TNFRSF17	HGNC	ENSG00000048462	34	0	0	38	26	40.62	-	-	-	C	12061488	T	C	12061488	2	2	708	1	0	0	0	0	0	0	0	1	16385	1742	61	5		5	TNFRSF17	16	12061488	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1045217	12061488	78293265	657	61947										
SMG1	0	genome.wustl.edu	37	chr16	18841308	18841308	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctccttaatagtctgtagtcTttttagaaagaaaatctctt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	18841308	18841308	T	-	DEL	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	frame_shift_del	c.9073	p.R3025fs	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	46	0	0	49	23	31.94	-	-	-	-	18841308	T	-	18841308	7	5	708	1	0	1	0	1	0	0	0	0	14884	1617	56	0	1956	0	SMG1	16	18841308	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	6779820	18841308	71513445	658	61948										
SMG1	0	genome.wustl.edu	37	chr16	18846392	18846392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgtctaataagtctgctgtTgatgtctgctgcgtatcgct	10	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	18846392	18846392	T	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.8152	p.N2718D	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	71	0	0	68	33	32.67	-	-	-	C	18846392	T	C	18846392	3	2	708	1	0	0	0	0	1	0	0	0	14884	1812	63	5	2893	5	SMG1	16	18846392	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5084	18846392	71508361	659	61949										
GPR139	0	genome.wustl.edu	37	chr16	20043420	20043420	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgtggcaaagatggaggtAatggtgaacaagatggcggt	17	3	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	20043420	20043420	A	G	SNP	GPR139	ENST00000570682	human	ensembl	69_37n	-1	known	silent	c.699	p.I233	0.939	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC	ENSG00000180269	53	0	0	64	25	28.09	-	-	-	G	20043420	A	G	20043420	2	3	708	1	0	0	0	0	0	0	0	1	6698	358	13	5		5	GPR139	16	20043420	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1197028	20043420	70311333	660	61950										
CRYM	0	genome.wustl.edu	37	chr16	21288836	21288836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaggtgatgccgcggtcctcGtagaaggtgaccaacttggt	15	9	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	21288836	21288836	G	A	SNP	CRYM	ENST00000219599	human	ensembl	69_37n	-1	known	silent	c.240	p.Y80	0.995	pfam_ODC_Mu_crystall	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	CRYM	HGNC	ENSG00000103316	43	0	0	35	13	27.08	-	-	-	A	21288836	G	A	21288836	2	1	708	1	0	0	0	0	0	0	0	1	3951	1140	40	1		1	CRYM	16	21288836	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1245416	21288836	69065917	661	61951										
USP31	0	genome.wustl.edu	37	chr16	23117794	23117794	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtccctcaggcatcatatcAgtctctgatggtggctaaaa	10	10	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	23117794	23117794	A	C	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	silent	c.786	p.T262	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	36	0	0	61	15	19.74	-	-	-	C	23117794	A	C	23117794	2	2	708	1	0	0	0	0	0	0	0	1	17159	175	7	5		5	USP31	16	23117794	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1828958	23117794	67236959	662	61952										
CHP2	0	genome.wustl.edu	37	chr16	23767738	23767738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agctctatgacctggatcgcGatgggaagatctccaggcat	12	10	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	23767738	23767738	G	A	SNP	CHP2	ENST00000300113	human	ensembl	69_37n	1	known	missense	c.382	p.D128N	0.997	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CHP2	HGNC	ENSG00000166869	61	0	0	96	24	20	-	-	-	A	23767738	G	A	23767738	3	1	708	1	0	0	0	0	1	0	0	0	3396	1058	37	1	400	1	CHP2	16	23767738	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	649944	23767738	66587015	663	61953										
RBBP6	0	genome.wustl.edu	37	chr16	24574618	24574618	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgctcttatggaagagaaggTaaattttactggtgctttaa	10	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	24574618	24574618	T	A	SNP	RBBP6	ENST00000319715	human	ensembl	69_37n	1	known	splice_site	c.1386+2	e11+2	0.997	-	-	-	no_errors	RBBP6	HGNC	ENSG00000122257	29	0	0	74	14	15.91	-	-	-	A	24574618	T	A	24574618	5	1	708	1	0	0	0	0	0	0	1	0	13186	1652	57	5	1484	5	RBBP6	16	24574618	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	806880	24574618	65780135	664	61954										
KIAA0556	0	genome.wustl.edu	37	chr16	27788938	27788938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgtgtccctgcagctcctggTggacgacctgcttgtgtaca	12	13	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	27788938	27788938	T	C	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	1	known	missense	c.4559	p.V1520A	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	46	0	0	40	5	10.87	-	-	-	C	27788938	T	C	27788938	3	2	708	1	0	0	0	0	1	0	0	0	8235	1696	59	5	4661	5	KIAA0556	16	27788938	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3214320	27788938	62565815	665	61955										
XPO6	0	genome.wustl.edu	37	chr16	28123194	28123194	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cactgggcttcaggttgcgaTagtcccgggagagtgcagag	16	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	28123194	28123194	T	C	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	missense	c.2285	p.Y762C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	92	0	0	171	25	12.76	-	-	-	C	28123194	T	C	28123194	3	2	708	1	0	0	0	0	1	0	0	0	17545	1406	49	5	1124	5	XPO6	16	28123194	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	334256	28123194	62231559	666	61956										
RABEP2	0	genome.wustl.edu	37	chr16	28931139	28931139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttctccagggagtccagggGgtaggcccgggacagcagct	16	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	28931139	28931139	G	A	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	missense	c.400	p.P134S	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	53	0	0	47	16	25.4	-	-	-	A	28931139	G	A	28931139	3	1	708	1	0	0	0	0	1	0	0	0	13045	1232	43	4	1353	4	RABEP2	16	28931139	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	807945	28931139	61423614	667	61957										
SEPT1	0	genome.wustl.edu	37	chr16	30389784	30389784	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtctgactgctcgccctgggCctggctctgctgcatttggg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	30389784	30389784	C	-	DEL	SEPT1	ENST00000321367	human	ensembl	69_37n	-1	known	frame_shift_del	c.1090	p.A364fs	0.988	pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	39	0	0	35	5	11.36	-	-	-	-	30389784	C	-	30389784	7	5	708	1	0	1	0	1	0	0	0	0	14147	739	26	0	32	0	SEPT1	16	30389784	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	1458645	30389784	59964969	668	61958										
ZNF785	0	genome.wustl.edu	37	chr16	30594328	30594328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgactcttgcagtctgagcaCgcgtaaggcttctccccggt	11	14	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	30594328	30594328	C	T	SNP	ZNF785	ENST00000395216	human	ensembl	69_37n	-1	known	silent	c.771	p.A257	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	56	0	0	39	21	35	-	-	-	T	30594328	C	T	30594328	2	4	708	1	0	0	0	0	0	0	0	1	18250	523	19	1		1	ZNF785	16	30594328	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	204544	30594328	59760425	669	61959										
HSD3B7	0	genome.wustl.edu	37	chr16	30999275	30999275	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cccattgctgccctactggcTgctggtgttcctggctgccc	11	16	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	30999275	30999275	T	C	SNP	HSD3B7	ENST00000297679	human	ensembl	69_37n	1	known	missense	c.881	p.L294P	1.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377	57	0	0	34	10	22.73	-	-	-	C	30999275	T	C	30999275	3	2	708	1	0	0	0	0	1	0	0	0	7443	1580	55	5	903	5	HSD3B7	16	30999275	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	404947	30999275	59355478	670	61960										
PRSS53	0	genome.wustl.edu	37	chr16	31096162	31096162	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccatcaggcaggtggtggtcAggatagggcaggcagagggg	20	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	31096162	31096162	A	G	SNP	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	silent	c.1218	p.P406	0.015	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	28	0	0	11	6	35.29	-	-	-	G	31096162	A	G	31096162	2	3	708	1	0	0	0	0	0	0	0	1	12712	175	7	5		5	PRSS53	16	31096162	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	96887	31096162	59258591	671	61961										
NETO2	0	genome.wustl.edu	37	chr16	47117199	47117199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgacataaatttcacagggaAtctcctccattactcggtct	6	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	47117199	47117199	A	G	SNP	NETO2	ENST00000562435	human	ensembl	69_37n	-1	known	missense	c.1511	p.I504T	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208	118	0	0	160	42	20.79	-	-	-	G	47117199	A	G	47117199	3	3	708	1	0	0	0	0	1	0	0	0	10412	101	4	5	70	5	NETO2	16	47117199	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	16021037	47117199	43237554	672	61962										
ABCC11	0	genome.wustl.edu	37	chr16	48201522	48201522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggattgtgcgctggatcaggGtgtctgtctccatgtcaatg	14	8	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	48201522	48201522	G	A	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.3941	p.T1314I	0.054	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	78	0	0	77	33	30	-	-	-	A	48201522	G	A	48201522	3	1	708	1	0	0	0	0	1	0	0	0	51	1261	44	4	215	4	ABCC11	16	48201522	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1084323	48201522	42153231	673	61963										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53691441	53691441	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcttgcaccgtttctgcaTgagttgcttgcagctctctc	9	13	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	53691441	53691441	T	C	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	missense	c.1505	p.H502R	1.000	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	89	0	0	125	18	12.59	-	-	-	C	53691441	T	C	53691441	3	2	708	1	0	0	0	0	1	0	0	0	13636	1464	51	5	2502	5	RPGRIP1L	16	53691441	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5489919	53691441	36663312	674	61964										
SLC6A2	0	genome.wustl.edu	37	chr16	55730220	55730220	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggctgttgtgtttttcgtcAtgctcctggcgctgggcctt	14	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	55730220	55730220	A	G	SNP	SLC6A2	ENST00000219833	human	ensembl	69_37n	1	known	missense	c.1231	p.M411V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546	168	0	0	207	40	16.19	-	-	-	G	55730220	A	G	55730220	3	3	708	1	0	0	0	0	1	0	0	0	14772	217	8	5	1352	5	SLC6A2	16	55730220	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2038779	55730220	34624533	675	61965										
NLRC5	0	genome.wustl.edu	37	chr16	57054809	57054809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctgcaactcaacaagctgcAtgtccagggttcggacacct	9	14	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	57054809	57054809	A	G	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.185	p.H62R	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	87	0	0	92	20	17.86	-	-	-	G	57054809	A	G	57054809	3	3	708	1	0	0	0	0	1	0	0	0	10542	217	8	5	187	5	NLRC5	16	57054809	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1324589	57054809	33299944	676	61966										
CCDC135	0	genome.wustl.edu	37	chr16	57752315	57752315	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagtacatgctcctggggacTgataagtctcagctgtcctt	11	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	57752315	57752315	T	C	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	silent	c.1134	p.T378	0.002	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	89	0	0	103	53	33.97	-	-	-	C	57752315	T	C	57752315	2	2	708	1	0	0	0	0	0	0	0	1	2794	1567	55	5		5	CCDC135	16	57752315	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	697506	57752315	32602438	677	61967										
KIFC3	0	genome.wustl.edu	37	chr16	57795058	57795058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggttggtgaactcggtcgtgCgattagtgtggccaaactca	14	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	57795058	57795058	C	T	SNP	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	missense	c.1898	p.R633H	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	107	0	0	102	19	15.7	-	-	-	T	57795058	C	T	57795058	3	4	708	1	0	0	0	0	1	0	0	0	8366	768	27	1	632	1	KIFC3	16	57795058	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	42743	57795058	32559695	678	61968										
TEPP	0	genome.wustl.edu	37	chr16	58018605	58018605	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggaaagctggcgcccatcgcGccaggcatcaaccgagtgga	14	13	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	58018605	58018605	G	T	SNP	TEPP	ENST00000290871	human	ensembl	69_37n	1	known	silent	c.516	p.A172	0.037	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648	23	0	0	22	6	21.43	-	-	-	T	58018605	G	T	58018605	2	4	708	1	0	0	0	0	0	0	0	1	15855	1074	38	3		3	TEPP	16	58018605	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	223547	58018605	32336148	679	61969										
CMTM2	0	genome.wustl.edu	37	chr16	66620992	66620992	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccatgaatctccactacttActtgctgtggtgagtctttc	7	11	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	66620992	66620992	A	G	SNP	CMTM2	ENST00000268595	human	ensembl	69_37n	1	known	silent	c.537	p.L179	0.000	NULL	NULL	-	no_errors	CMTM2	HGNC	ENSG00000140932	161	0	0	172	41	19.16	-	-	-	G	66620992	A	G	66620992	2	3	708	1	0	0	0	0	0	0	0	1	3613	388	14	5		5	CMTM2	16	66620992	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	8602387	66620992	23733761	680	61970										
RANBP10	0	genome.wustl.edu	37	chr16	67768929	67768929	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caggtgtctgcaggcctacgGtggggtagaggttggcctga	18	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	67768929	67768929	G	T	SNP	RANBP10	ENST00000317506	human	ensembl	69_37n	-1	known	missense	c.608	p.T203N	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084	24	0	0	18	10	35.71	-	-	-	T	67768929	G	T	67768929	3	4	708	1	0	0	0	0	1	0	0	0	13109	1261	44	4	1290	4	RANBP10	16	67768929	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1147937	67768929	22585824	681	61971										
LCAT	0	genome.wustl.edu	37	chr16	67977876	67977876	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgacgggccgtgtgtggttActgagctcagccttgggcgt	16	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	67977876	67977876	A	G	SNP	LCAT	ENST00000264005	human	ensembl	69_37n	-1	known	silent	c.129	p.S43	1.000	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398	37	0	0	16	8	33.33	-	-	-	G	67977876	A	G	67977876	2	3	708	1	0	0	0	0	0	0	0	1	8712	388	14	5		5	LCAT	16	67977876	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	208947	67977876	22376877	682	61972										
DPEP3	0	genome.wustl.edu	37	chr16	68012203	68012203	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aggtgaaggtaagtgtcaggTagcgcacccccagcacatag	13	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	68012203	68012203	T	C	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	missense	c.728	p.Y243C	1.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	52	0	0	65	12	15.19	-	-	-	C	68012203	T	C	68012203	3	2	708	1	0	0	0	0	1	0	0	0	4750	1638	57	5	841	5	DPEP3	16	68012203	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	34327	68012203	22342550	683	61973										
NFAT5	0	genome.wustl.edu	37	chr16	69693765	69693765	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgaggaaagatggctccacTttgacactgcaaacaccctc	8	12	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	69693765	69693765	T	C	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	silent	c.1332	p.T444	0.971	superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NFAT	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	83	0	0	86	36	29.51	-	-	-	C	69693765	T	C	69693765	2	2	708	1	0	0	0	0	0	0	0	1	10432	1596	56	5		5	NFAT5	16	69693765	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1681562	69693765	20660988	684	61974										
SF3B3	0	genome.wustl.edu	37	chr16	70566408	70566408	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacaatgatccaacaggggaAgcagcagctaatacccagca	10	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	70566408	70566408	A	G	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	silent	c.597	p.E199	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	77	0	0	102	21	17.07	-	-	-	G	70566408	A	G	70566408	2	3	708	1	0	0	0	0	0	0	0	1	14240	69	3	5		5	SF3B3	16	70566408	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	872643	70566408	19788345	685	61975										
SF3B3	0	genome.wustl.edu	37	chr16	70566471	70566471	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaccttggtttaaatcatgtGgtccgaaaatacagtgaacc	9	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	70566471	70566471	G	T	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	silent	c.660	p.V220	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	90	0	0	109	26	19.26	-	-	-	T	70566471	G	T	70566471	2	4	708	1	0	0	0	0	0	0	0	1	14240	1335	47	4		4	SF3B3	16	70566471	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	63	70566471	19788282	686	61976										
PMFBP1	0	genome.wustl.edu	37	chr16	72166652	72166652	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgcaggggcctcaccagccAgcctctcctgctgcttggcc	11	18	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	72166652	72166652	A	G	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.1442	p.L481P	0.007	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	89	0	0	66	14	17.07	-	-	-	G	72166652	A	G	72166652	3	3	708	1	0	0	0	0	1	0	0	0	12208	188	7	5	1689	5	PMFBP1	16	72166652	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1600181	72166652	18188101	687	61977										
ANKRD11	0	genome.wustl.edu	37	chr16	89357145	89357145	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtctctccacgctcgtttctCttgttcactttatctttggt	6	12	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	16	89357145	89357145	C	A	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.489	p.K163N	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	42	0	0	53	9	14.52	-	-	-	A	89357145	C	A	89357145	3	1	708	1	0	0	0	0	1	0	0	0	639	912	32	2	7534	2	ANKRD11	16	89357145	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	17190493	89357145	997608	688	61978										
ABR	0	genome.wustl.edu	37	chr17	910413	910413	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgccagggtacctgcgccaTgacgtcatgggaccagatgt	14	11	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	910413	910413	T	A	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.2482	p.M828L	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	106	0	0	62	34	35.42	-	-	-	A	910413	T	A	910413	3	1	708	1	0	0	0	0	1	0	0	0	99	1464	51	5	105	5	ABR	17	910413	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09		910413	80284797	689	61979										
SPNS2	0	genome.wustl.edu	37	chr17	4434032	4434032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctcttcaccaagaacacgCgtacgctcatgctgtccgtc	7	16	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	4434032	4434032	C	T	SNP	SPNS2	ENST00000329078	human	ensembl	69_37n	1	known	missense	c.679	p.R227C	0.811	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018	36	0	0	26	16	37.21	-	-	-	T	4434032	C	T	4434032	3	4	708	1	0	0	0	0	1	0	0	0	15166	768	27	1	693	1	SPNS2	17	4434032	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	3523619	4434032	76761178	690	61980										
ALOX15	0	genome.wustl.edu	37	chr17	4535246	4535246	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggagagaagcctggtggaAgttgggcagtgtcgccatca	16	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	4535246	4535246	A	G	SNP	ALOX15	ENST00000545513	human	ensembl	69_37n	-1	known	missense	c.1813	p.F605L	0.001	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX15	HGNC	ENSG00000161905	74	0	0	35	36	50.7	-	-	-	G	4535246	A	G	4535246	3	3	708	1	0	0	0	0	1	0	0	0	538	72	3	5	249	5	ALOX15	17	4535246	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	101214	4535246	76659964	691	61981										
PELP1	0	genome.wustl.edu	37	chr17	4578434	4578434	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgatgctccaggaattgaggAcctggggaagcaggcggccg	17	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	4578434	4578434	A	G	SNP	PELP1	ENST00000301396	human	ensembl	69_37n	-1	known	missense	c.1646	p.V549A	1.000	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456	18	0	0	18	20	52.63	-	-	-	G	4578434	A	G	4578434	3	3	708	1	0	0	0	0	1	0	0	0	11798	275	10	5	2206	5	PELP1	17	4578434	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	43188	4578434	76616776	692	61982										
ZNF232	0	genome.wustl.edu	37	chr17	5013061	5013061	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcttctcttgtccctgtgtAccctgaagggccagagtttc	9	12	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	5013061	5013061	A	G	SNP	ZNF232	ENST00000250076	human	ensembl	69_37n	-1	known	silent	c.126	p.G42	0.001	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF232	HGNC	ENSG00000167840	156	0	0	89	51	36.17	-	-	-	G	5013061	A	G	5013061	2	3	708	1	0	0	0	0	0	0	0	1	17881	378	14	5		5	ZNF232	17	5013061	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	434627	5013061	76182149	693	61983										
USP6	0	genome.wustl.edu	37	chr17	5072193	5072193	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacccggccctctgccagcaTaaaccactcacaccccaggg	8	19	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	5072193	5072193	T	C	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	silent	c.3360	p.H1120	0.942	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	76	0	0	91	17	15.74	-	-	-	C	5072193	T	C	5072193	2	2	708	1	0	0	0	0	0	0	0	1	17183	1403	49	5		5	USP6	17	5072193	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	59132	5072193	76123017	694	61984										
NLGN2	0	genome.wustl.edu	37	chr17	7319375	7319375	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	taacttctccaagaatgacgTcatgctcagtgccgtggtca	9	11	4	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	7319375	7319375	T	A	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.1583	p.V528D	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	19	0	0	10	16	61.54	-	-	-	A	7319375	T	A	7319375	3	1	708	1	0	0	0	0	1	0	0	0	10534	1667	58	5	1605	5	NLGN2	17	7319375	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2247182	7319375	73875835	695	61985										
DNAH2	0	genome.wustl.edu	37	chr17	7680816	7680816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagggggaacttgaccaagaTcatgcggcttaaaattgtgg	13	7	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	7680816	7680816	T	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.5111	p.I1704T	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	79	0	0	51	44	46.32	-	-	-	C	7680816	T	C	7680816	3	2	708	1	0	0	0	0	1	0	0	0	4638	1435	50	5	5237	5	DNAH2	17	7680816	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	361441	7680816	73514394	696	61986										
MYH10	0	genome.wustl.edu	37	chr17	8480563	8480563	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagaaacttacaggaatattAtggtcctttcttcctttatg	6	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	8480563	8480563	A	G	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	silent	c.624	p.H208	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	93	0	0	77	55	41.67	-	-	-	G	8480563	A	G	8480563	2	3	708	1	0	0	0	0	0	0	0	1	10102	446	16	5		5	MYH10	17	8480563	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	799747	8480563	72714647	697	61987										
TRIM16	0	genome.wustl.edu	37	chr17	15535965	15535965	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctagggaaggtgatgtcttcAgtgttcttaaacttgcagta	11	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	15535965	15535965	A	G	SNP	TRIM16	ENST00000336708	human	ensembl	69_37n	-1	known	silent	c.873	p.T291	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926	100	0	0	78	50	39.06	-	-	-	G	15535965	A	G	15535965	2	3	708	1	0	0	0	0	0	0	0	1	16587	175	7	5		5	TRIM16	17	15535965	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	7055402	15535965	65659245	698	61988										
MPRIP	0	genome.wustl.edu	37	chr17	17053480	17053480	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agccgacttggatggagaaaTtgacttgtccgcatgttacg	12	8	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	17053480	17053480	T	A	SNP	MPRIP	ENST00000395811	human	ensembl	69_37n	1	known	missense	c.1298	p.I433N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_Ferritin/RR-like,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030	63	0	0	40	15	27.27	-	-	-	A	17053480	T	A	17053480	3	1	708	1	0	0	0	0	1	0	0	0	9815	1493	52	5	1344	5	MPRIP	17	17053480	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1517515	17053480	64141730	699	61989										
ALDH3A2	0	genome.wustl.edu	37	chr17	19575060	19575060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgggatgggagcttatcacGgaaaacatagttttgatact	12	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	19575060	19575060	G	A	SNP	ALDH3A2	ENST00000339618	human	ensembl	69_37n	1	known	missense	c.1234	p.G412R	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210	66	0	0	68	26	27.66	-	-	-	A	19575060	G	A	19575060	3	1	708	1	0	0	0	0	1	0	0	0	498	1117	39	1	1268	1	ALDH3A2	17	19575060	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2521580	19575060	61620150	700	61990										
USP22	0	genome.wustl.edu	37	chr17	20919169	20919169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgtgggtccacaccaggtgcAgcaacttatacgggatgtga	13	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	20919169	20919169	A	G	SNP	USP22	ENST00000261497	human	ensembl	69_37n	-1	known	missense	c.734	p.L245P	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP22	HGNC	ENSG00000124422	75	0	0	24	21	45.65	-	-	-	G	20919169	A	G	20919169	3	3	708	1	0	0	0	0	1	0	0	0	17151	188	7	5	875	5	USP22	17	20919169	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1344109	20919169	60276041	701	61991										
DHRS7B	0	genome.wustl.edu	37	chr17	21087713	21087713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctccatgatcaagaggaggCaaggccacattgtcgccatc	10	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	21087713	21087713	C	A	SNP	DHRS7B	ENST00000395511	human	ensembl	69_37n	1	known	missense	c.556	p.Q186K	0.007	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_DUF1776_fun,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_DUF1776_fun,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7B	HGNC	ENSG00000109016	65	0	0	58	17	22.67	-	-	-	A	21087713	C	A	21087713	3	1	708	1	0	0	0	0	1	0	0	0	4532	711	25	4	574	4	DHRS7B	17	21087713	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	168544	21087713	60107497	702	61992										
SUPT6H	0	genome.wustl.edu	37	chr17	27017178	27017178	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataaggacctccggacagccTaccgctctcccaacacagag	8	16	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	27017178	27017178	T	C	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.3421	p.Y1141H	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	57	0	0	76	30	28.3	-	-	-	C	27017178	T	C	27017178	3	2	708	1	0	0	0	0	1	0	0	0	15491	1522	53	5	3519	5	SUPT6H	17	27017178	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5929465	27017178	54178032	703	61993										
SLC6A4	0	genome.wustl.edu	37	chr17	28548756	28548756	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctcccgttccccttgatgaAgctcagccactagggtggtg	11	13	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	28548756	28548756	A	C	SNP	SLC6A4	ENST00000261707	human	ensembl	69_37n	-1	known	missense	c.221	p.L74R	0.004	NULL	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	148	1	0.67	128	23	15.23	-	-	-	C	28548756	A	C	28548756	3	2	708	1	0	0	0	0	1	0	0	0	14775	72	3	5	1723	5	SLC6A4	17	28548756	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1531578	28548756	52646454	704	61994										
CRLF3	0	genome.wustl.edu	37	chr17	29123191	29123191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacataccttacaccatcgtAcaatgatgcctccaggtttc	5	13	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	29123191	29123191	A	G	SNP	CRLF3	ENST00000324238	human	ensembl	69_37n	-1	known	missense	c.590	p.V197A	0.998	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF3	HGNC	ENSG00000176390	77	0	0	65	15	18.75	-	-	-	G	29123191	A	G	29123191	3	3	708	1	0	0	0	0	1	0	0	0	3918	391	14	5	758	5	CRLF3	17	29123191	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	574435	29123191	52072019	705	61995										
NF1	0	genome.wustl.edu	37	chr17	29563041	29563041	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgaagtggatcctaccaggTttgtcatcttttcacataga	8	8	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	29563041	29563041	T	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	splice_site	c.3974+2	e29+2	1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	74	0	0	53	34	39.08	-	-	-	C	29563041	T	C	29563041	5	2	708	1	0	0	0	0	0	0	1	0	10428	1739	60	5	4151	5	NF1	17	29563041	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	439850	29563041	51632169	706	61996										
CCT6B	0	genome.wustl.edu	37	chr17	33288280	33288280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccaaccgctgtctcacatttTcatggtgcctttaggaccca	7	14	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	33288280	33288280	T	C	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.133	p.K45E	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	12	0	0	14	11	44	-	-	-	C	33288280	T	C	33288280	3	2	708	1	0	0	0	0	1	0	0	0	2987	1792	62	5	1515	5	CCT6B	17	33288280	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3725239	33288280	47906930	707	61997										
KAT2A	0	genome.wustl.edu	37	chr17	40265785	40265785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgcgacagttggcgatgaccCgctgcaggtcggccacaaag	14	13	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	40265785	40265785	C	T	SNP	KAT2A	ENST00000225916	human	ensembl	69_37n	-1	known	missense	c.2396	p.R799Q	1.000	pirsf_Hist_acetylase_PCAF,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom	-	no_errors	KAT2A	HGNC	ENSG00000108773	31	0	0	7	10	55.56	-	-	-	T	40265785	C	T	40265785	3	4	708	1	0	0	0	0	1	0	0	0	8035	652	23	1	121	1	KAT2A	17	40265785	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	6977505	40265785	40929425	708	61998										
RUNDC3A	0	genome.wustl.edu	37	chr17	42390802	42390802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagggccgggcatggatccGggtggcactgatggagaagc	18	10	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	42390802	42390802	G	A	SNP	RUNDC3A	ENST00000426726	human	ensembl	69_37n	1	known	missense	c.389	p.R130Q	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3A	HGNC	ENSG00000108309	31	0	0	50	21	29.58	-	-	-	A	42390802	G	A	42390802	3	1	708	1	0	0	0	0	1	0	0	0	13830	1116	39	1	403	1	RUNDC3A	17	42390802	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2125017	42390802	38804408	709	61999										
MAP3K14	0	genome.wustl.edu	37	chr17	43367862	43367862	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctaggcccctacactcagCctgggcgatgatagagatgg	12	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	43367862	43367862	C	A	SNP	MAP3K14	ENST00000344686	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062	68	0	0	27	22	44.9	-	-	-	A	43367862	C	A	43367862	1	1	708	0	1	0	0	0	0	0	0	0	9319	739	26	4		4	MAP3K14	17	43367862	RNA	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	977060	43367862	37827348	710	62000										
TBKBP1	0	genome.wustl.edu	37	chr17	45787926	45787926	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctctgccagctgggtttcccTgtcgggtacccggatgatgc	13	13	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	45787926	45787926	T	C	SNP	TBKBP1	ENST00000361722	human	ensembl	69_37n	1	known	silent	c.1782	p.P594	0.190	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933	21	0	0	27	7	20	-	-	-	C	45787926	T	C	45787926	2	2	708	1	0	0	0	0	0	0	0	1	15733	1567	55	5		5	TBKBP1	17	45787926	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2420064	45787926	35407284	711	62001										
NFE2L1	0	genome.wustl.edu	37	chr17	46133761	46133761	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctttcaggacatagatctgaTtgacatcctttggcgacagg	10	9	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	46133761	46133761	T	A	SNP	NFE2L1	ENST00000362042	human	ensembl	69_37n	1	known	missense	c.524	p.I175N	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	122	0	0	157	55	25.94	-	-	-	A	46133761	T	A	46133761	3	1	708	1	0	0	0	0	1	0	0	0	10439	1493	52	5	530	5	NFE2L1	17	46133761	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	345835	46133761	35061449	712	62002										
HOXB3	0	genome.wustl.edu	37	chr17	46629396	46629396	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agagaactggtacctgtgccGggggagttgtttttcagctt							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	46629396	46629396	G	-	DEL	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	frame_shift_del	c.441	p.G148fs	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	115	0	0	61	42	40.38	-	-	-	-	46629396	G	-	46629396	7	5	708	1	0	1	0	1	0	0	0	0	7353	1103	39	0	862	0	HOXB3	17	46629396	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	495635	46629396	34565814	713	62003										
ACSF2	0	genome.wustl.edu	37	chr17	48551262	48551262	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttggccctggaaggtggtggGagtgaaggacgatcggatgg	20	5	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	48551262	48551262	G	C	SNP	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	missense	c.1625	p.G542A	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	119	0	0	85	57	40.14	-	-	-	C	48551262	G	C	48551262	3	2	708	1	0	0	0	0	1	0	0	0	175	1174	41	2	1679	2	ACSF2	17	48551262	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1921866	48551262	32643948	714	62004										
MMD	0	genome.wustl.edu	37	chr17	53481166	53481166	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acataaatggttcctccagcTgccatgagccagataaacca	7	12	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	53481166	53481166	T	C	SNP	MMD	ENST00000262065	human	ensembl	69_37n	-1	known	silent	c.408	p.A136	1.000	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960	48	0	0	29	18	38.3	-	-	-	C	53481166	T	C	53481166	2	2	708	1	0	0	0	0	0	0	0	1	9714	1567	55	5		5	MMD	17	53481166	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4929904	53481166	27714044	715	62005										
DGKE	0	genome.wustl.edu	37	chr17	54939578	54939578	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gattcaagtaaaactggctaAtccttttcgaataggacagg	9	7	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	54939578	54939578	A	T	SNP	DGKE	ENST00000284061	human	ensembl	69_37n	1	known	missense	c.1490	p.N497I	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933	72	0	0	82	16	16.33	-	-	-	T	54939578	A	T	54939578	3	4	708	1	0	0	0	0	1	0	0	0	4504	101	4	5	1528	5	DGKE	17	54939578	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1458412	54939578	26255632	716	62006										
C17orf64	0	genome.wustl.edu	37	chr17	58506842	58506842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atcagcggcatgaaggagcgGctgtccaacatgcagacccc	12	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	58506842	58506842	G	A	SNP	C17orf64	ENST00000269127	human	ensembl	69_37n	1	known	silent	c.549	p.R183	1.000	NULL	NULL	-	no_errors	C17orf64	HGNC	ENSG00000141371	35	0	0	22	20	47.62	-	-	-	A	58506842	G	A	58506842	2	1	708	1	0	0	0	0	0	0	0	1	1887	1190	42	4		4	C17orf64	17	58506842	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3567264	58506842	22688368	717	62007										
INTS2	0	genome.wustl.edu	37	chr17	59969042	59969042	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtttcacacagctgtctataAatccaatcctaagaaagaat	5	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	59969042	59969042	A	C	SNP	INTS2	ENST00000444766	human	ensembl	69_37n	-1	known	missense	c.1731	p.I577M	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506	86	0	0	107	54	33.54	-	-	-	C	59969042	A	C	59969042	3	2	708	1	0	0	0	0	1	0	0	0	7832	10	1	5	1931	5	INTS2	17	59969042	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1462200	59969042	21226168	718	62008										
MRC2	0	genome.wustl.edu	37	chr17	60751429	60751429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accctgtgtccgtaggaaggCcgctggaacgacagtccctg	13	13	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	60751429	60751429	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	1	known	silent	c.1467	p.G489	0.912	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	41	0	0	30	23	43.4	-	-	-	T	60751429	C	T	60751429	2	4	708	1	0	0	0	0	0	0	0	1	9830	726	26	4		4	MRC2	17	60751429	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	782387	60751429	20443781	719	62009										
ACE	0	genome.wustl.edu	37	chr17	61566421	61566421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaacctgcatgcctacgtgCgccgggccctgcaccgtcac	10	18	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	61566421	61566421	C	T	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.2569	p.R857C	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	69	0	0	57	27	32.14	-	-	-	T	61566421	C	T	61566421	3	4	708	1	0	0	0	0	1	0	0	0	136	768	27	1	2838	1	ACE	17	61566421	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	814992	61566421	19628789	720	62010										
FTSJ3	0	genome.wustl.edu	37	chr17	61899365	61899365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcttttggtcccttagacccTgatgtcccctgactcctgcc	8	16	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	61899365	61899365	T	C	SNP	FTSJ3	ENST00000427159	human	ensembl	69_37n	-1	known	missense	c.1454	p.Q485R	0.000	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	43	0	0	46	17	26.98	-	-	-	C	61899365	T	C	61899365	3	2	708	1	0	0	0	0	1	0	0	0	6138	1580	55	5	1121	5	FTSJ3	17	61899365	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	332944	61899365	19295845	721	62011										
KPNA2	0	genome.wustl.edu	37	chr17	66040147	66040147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagatacagcaagttgtgaAtcatggattagtcccattcc	8	10	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	66040147	66040147	A	G	SNP	KPNA2	ENST00000330459	human	ensembl	69_37n	1	known	missense	c.1124	p.N375S	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481	98	0	0	132	42	24.14	-	-	-	G	66040147	A	G	66040147	3	3	708	1	0	0	0	0	1	0	0	0	8483	101	4	5	1150	5	KPNA2	17	66040147	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4140782	66040147	15155063	722	62012										
COG1	0	genome.wustl.edu	37	chr17	71204484	71204484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcacgctccacagctggtgAcccgacagttcctggctcct	11	16	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	71204484	71204484	A	G	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	missense	c.2837	p.D946G	0.997	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	86	0	0	62	27	28.72	-	-	-	G	71204484	A	G	71204484	3	3	708	1	0	0	0	0	1	0	0	0	3687	275	10	5	2891	5	COG1	17	71204484	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5164337	71204484	9990726	723	62013										
NAT9	0	genome.wustl.edu	37	chr17	72767957	72767957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcggactcactcactgtcAgtctgagggtcacctcctga	10	14	5	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	72767957	72767957	A	G	SNP	NAT9	ENST00000357814	human	ensembl	69_37n	-1	known	missense	c.530	p.L177P	0.401	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	54	0	0	59	30	33.71	-	-	-	G	72767957	A	G	72767957	3	3	708	1	0	0	0	0	1	0	0	0	10254	188	7	5	97	5	NAT9	17	72767957	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1563473	72767957	8427253	724	62014										
CASKIN2	0	genome.wustl.edu	37	chr17	73503687	73503687	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgctgtccttgatgtcaacAgtggcctgagcctctagcag	11	11	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	73503687	73503687	A	G	SNP	CASKIN2	ENST00000321617	human	ensembl	69_37n	-1	known	silent	c.222	p.T74	0.126	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain	-	no_errors	CASKIN2	HGNC	ENSG00000177303	53	0	0	56	13	18.84	-	-	-	G	73503687	A	G	73503687	2	3	708	1	0	0	0	0	0	0	0	1	2692	175	7	5		5	CASKIN2	17	73503687	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	735730	73503687	7691523	725	62015										
UNC13D	0	genome.wustl.edu	37	chr17	73835919	73835919	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcccagggctgtgtactcaCgccatggactggtggaagtc	14	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	73835919	73835919	C	T	SNP	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	splice_site	c.1055+1	e12+1	1.000	-	-	-	no_errors	UNC13D	HGNC	ENSG00000092929	26	0	0	34	11	24.44	-	-	-	T	73835919	C	T	73835919	5	4	708	1	0	0	0	0	0	0	1	0	17084	550	19	1	2300	1	UNC13D	17	73835919	Splice_Site	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	332232	73835919	7359291	726	62016										
WBP2	0	genome.wustl.edu	37	chr17	73851355	73851355	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acgatcactccgccgccctcCgagtgattcttgttgagcgc	10	15	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	73851355	73851355	C	A	SNP	WBP2	ENST00000254806	human	ensembl	69_37n	-1	known	silent	c.24	p.S8	0.998	pfam_GRAM	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2	HGNC	ENSG00000132471	41	0	0	77	19	19.79	-	-	-	A	73851355	C	A	73851355	2	1	708	1	0	0	0	0	0	0	0	1	17356	639	23	3		3	WBP2	17	73851355	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	15436	73851355	7343855	727	62017										
ACOX1	0	genome.wustl.edu	37	chr17	73951690	73951690	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttctctgggaatacgatggTtgtccattttgaggtagcca	11	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	73951690	73951690	T	C	SNP	ACOX1	ENST00000293217	human	ensembl	69_37n	-1	known	missense	c.731	p.N244S	1.000	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533	132	1	0.75	124	28	18.42	-	-	-	C	73951690	T	C	73951690	3	2	708	1	0	0	0	0	1	0	0	0	158	1725	60	5	1287	5	ACOX1	17	73951690	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	100335	73951690	7243520	728	62018										
QRICH2	0	genome.wustl.edu	37	chr17	74300972	74300972	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctggtattaccaggaattgCtcccgatctttgaatagctt	9	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	74300972	74300972	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	silent	c.87	p.E29	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	86	0	0	135	33	19.64	-	-	-	T	74300972	C	T	74300972	2	4	708	1	0	0	0	0	0	0	0	1	12963	796	28	4		4	QRICH2	17	74300972	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	349282	74300972	6894238	729	62019										
PRPSAP1	0	genome.wustl.edu	37	chr17	74328411	74328411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcttcctcatcttgctctgCttgctgtaggggaagtaggg	12	10	4	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	74328411	74328411	C	T	SNP	PRPSAP1	ENST00000446526	human	ensembl	69_37n	-1	known	silent	c.396	p.K132	0.997	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542	162	0	0	262	37	12.33	-	-	-	T	74328411	C	T	74328411	2	4	708	1	0	0	0	0	0	0	0	1	12662	796	28	4		4	PRPSAP1	17	74328411	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	27439	74328411	6866799	730	62020										
ST6GALNAC2	0	genome.wustl.edu	37	chr17	74566662	74566662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcacctgtcccctttatctAggccctcagggacaggcacg	9	16	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	74566662	74566662	A	G	SNP	ST6GALNAC2	ENST00000225276	human	ensembl	69_37n	-1	known	missense	c.758	p.L253P	0.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC2	HGNC	ENSG00000070731	52	0	0	74	12	13.95	-	-	-	G	74566662	A	G	74566662	3	3	708	1	0	0	0	0	1	0	0	0	15315	420	15	5	382	5	ST6GALNAC2	17	74566662	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	238251	74566662	6628548	731	62021										
TNRC6C	0	genome.wustl.edu	37	chr17	76067210	76067210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gatgaggcctggatcatgagCcggctgatcaaacaactcac	11	11	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	76067210	76067210	C	T	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	silent	c.2814	p.S938	1.000	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	81	0	0	139	48	25.67	-	-	-	T	76067210	C	T	76067210	2	4	708	1	0	0	0	0	0	0	0	1	16437	738	26	4		4	TNRC6C	17	76067210	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1500548	76067210	5128000	732	62022										
PGS1	0	genome.wustl.edu	37	chr17	76420260	76420260	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggacagtatggctgagggtCaggtgtgctgccagtaagtg	18	6	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	76420260	76420260	C	A	SNP	PGS1	ENST00000588281	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	PGS1	HGNC	ENSG00000087157	24	0	0	26	10	27.78	-	-	-	A	76420260	C	A	76420260	1	1	708	0	1	0	0	0	0	0	0	0	11882	841	29	2		2	PGS1	17	76420260	RNA	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	353050	76420260	4774950	733	62023										
DNAH17	0	genome.wustl.edu	37	chr17	76486797	76486798	+	Frame_Shift_Ins	INS	-	-	G													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacgggttccatcccaggtcINSggctgggttgatgtagagga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	76486797	76486798	-	G	INS	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6760_6759	p.D2253fs	0.997:0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	68	0	0	117	20	14.6	-	-	-	G	76486798	-	G	76486797	7	5	708	1	0	1	1	0	0	0	0	0	4637	884	31	0	6738	0	DNAH17	17	76486797	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	66537	76486797	4708413	734	62024										
CARD14	0	genome.wustl.edu	37	chr17	78182035	78182035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcgccctgtctatacagcaGcctggctcctgacggctgga	13	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	78182035	78182035	G	A	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	1	known	missense	c.2906	p.S969N	1.000	pfscan_Guanylate_kin	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	21	0	0	29	9	23.68	-	-	-	A	78182035	G	A	78182035	3	1	708	1	0	0	0	0	1	0	0	0	2671	971	34	4	3149	4	CARD14	17	78182035	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1695238	78182035	3013175	735	62025										
NPLOC4	0	genome.wustl.edu	37	chr17	79564290	79564290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccttatttcgactgtagcggAcggtaccctttcgggtatct	10	11	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	79564290	79564290	A	G	SNP	NPLOC4	ENST00000374747	human	ensembl	69_37n	-1	known	missense	c.974	p.V325A	1.000	pfam_NPL4,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446	97	0	0	205	46	18.33	-	-	-	G	79564290	A	G	79564290	3	3	708	1	0	0	0	0	1	0	0	0	10659	275	10	5	884	5	NPLOC4	17	79564290	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1382255	79564290	1630920	736	62026										
HGS	0	genome.wustl.edu	37	chr17	79663911	79663911	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agccctcgggaccagccagcTtccccagcaccttcagccct	8	20	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	79663911	79663911	T	G	SNP	HGS	ENST00000329138	human	ensembl	69_37n	1	known	missense	c.1765	p.F589V	1.000	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	13	0	0	15	6	27.27	-	-	-	G	79663911	T	G	79663911	3	3	708	1	0	0	0	0	1	0	0	0	7138	1609	56	5	1835	5	HGS	17	79663911	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	99621	79663911	1531299	737	62027										
SLC25A10	0	genome.wustl.edu	37	chr17	79684474	79684474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agctggtccttagcaccgggTacctctctgacaacatcttc	8	14	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	79684474	79684474	T	C	SNP	SLC25A10	ENST00000541223	human	ensembl	69_37n	1	known	missense	c.1045	p.Y349H	0.048	superfamily_Mt_carrier_dom,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,prints_Mit_uncoupling,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A10	HGNC	ENSG00000183048	80	0	0	75	28	26.92	-	-	-	C	79684474	T	C	79684474	3	2	708	1	0	0	0	0	1	0	0	0	14561	1638	57	5	610	5	SLC25A10	17	79684474	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	20563	79684474	1510736	738	62028										
C17orf62	0	genome.wustl.edu	37	chr17	80403805	80403805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggctgaacgtcttcaaaacaAccttccctgtgctcttgtcg	8	13	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	80403805	80403805	A	C	SNP	C17orf62	ENST00000306645	human	ensembl	69_37n	-1	known	missense	c.233	p.V78G	0.628	NULL	NULL	-	no_errors	C17orf62	HGNC	ENSG00000178927	74	0	0	105	34	24.29	-	-	-	C	80403805	A	C	80403805	3	2	708	1	0	0	0	0	1	0	0	0	1885	43	2	5	342	5	C17orf62	17	80403805	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	719331	80403805	791405	739	62029										
TBCD	0	genome.wustl.edu	37	chr17	80755680	80755680	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaagactgtttgccctatggTaaggtttatttttaagagac	10	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	17	80755680	80755680	T	C	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	splice_site	c.817+2	e8+2	1.000	-	-	-	no_errors	TBCD	HGNC	ENSG00000141556	204	0	0	367	89	19.35	-	-	-	C	80755680	T	C	80755680	5	2	708	1	0	0	0	0	0	0	1	0	15728	1652	57	5	849	5	TBCD	17	80755680	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	351875	80755680	439530	740	62030										
SMCHD1	0	genome.wustl.edu	37	chr18	2732390	2732390	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caaacatcaggatgaggttaAttggatagcgggtgatatta	12	4	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	2732390	2732390	A	G	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.3176	p.N1059S	0.997	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	103	0	0	101	23	18.55	-	-	-	G	2732390	A	G	2732390	3	3	708	1	0	0	0	0	1	0	0	0	14877	101	4	5	3274	5	SMCHD1	18	2732390	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		2732390	75344858	741	62031										
DLGAP1	0	genome.wustl.edu	37	chr18	3879223	3879223	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cgggcccggctcacggtgagCgtggaggaccaggcgctctt	17	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	3879223	3879223	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	69_37n	-1	known	silent	c.846	p.T282	0.007	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	29	0	0	35	14	28.57	-	-	-	T	3879223	C	T	3879223	2	4	708	1	0	0	0	0	0	0	0	1	4595	755	27	1		1	DLGAP1	18	3879223	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1146833	3879223	74198025	742	62032										
PSMG2	0	genome.wustl.edu	37	chr18	12718542	12718542	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaaagccattctgtgaaaaActgctttcctgggtgaaaag	9	8	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	12718542	12718542	A	G	SNP	PSMG2	ENST00000317615	human	ensembl	69_37n	1	known	silent	c.315	p.K105	0.894	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	-	no_errors	PSMG2	HGNC	ENSG00000128789	144	0	0	226	45	16.61	-	-	-	G	12718542	A	G	12718542	2	3	708	1	0	0	0	0	0	0	0	1	12792	40	2	5		5	PSMG2	18	12718542	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	8839319	12718542	65358706	743	62033										
KLHL14	0	genome.wustl.edu	37	chr18	30267120	30267120	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	caagaaataaacacttacctTtcctgcatgggtggaagttg	9	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	30267120	30267120	T	C	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	silent	c.1236	p.E412	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	78	0	0	42	20	32.26	-	-	-	C	30267120	T	C	30267120	2	2	708	1	0	0	0	0	0	0	0	1	8423	1838	64	5		5	KLHL14	18	30267120	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	17548578	30267120	47810128	744	62034										
MC4R	0	genome.wustl.edu	37	chr18	58038839	58038839	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acaaagacgccaatcaggatGgtcaaggtaatcgctccctt	9	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	58038839	58038839	G	T	SNP	MC4R	ENST00000299766	human	ensembl	69_37n	-1	known	silent	c.744	p.T248	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603	34	0	0	43	14	24.56	-	-	-	T	58038839	G	T	58038839	2	4	708	1	0	0	0	0	0	0	0	1	9437	1335	47	4		4	MC4R	18	58038839	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	27771719	58038839	20038409	745	62035										
CDH20	0	genome.wustl.edu	37	chr18	59166695	59166695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaccttatgtggccactgtgCcagaaatgtcccctgtgggt	12	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	59166695	59166695	C	T	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.523	p.P175S	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	46	0	0	56	23	29.11	-	-	-	T	59166695	C	T	59166695	3	4	708	1	0	0	0	0	1	0	0	0	3135	739	26	4	529	4	CDH20	18	59166695	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1127856	59166695	18910553	746	62036										
ZCCHC2	0	genome.wustl.edu	37	chr18	60241727	60241727	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccttccttccacacagtagtActcccgctttgcatcttaca	4	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	60241727	60241727	A	G	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.2413	p.T805A	0.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	102	0	0	115	48	29.27	-	-	-	G	60241727	A	G	60241727	3	3	708	1	0	0	0	0	1	0	0	0	17683	391	14	5	2463	5	ZCCHC2	18	60241727	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1075032	60241727	17835521	747	62037										
SERPINB2	0	genome.wustl.edu	37	chr18	61569726	61569726	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaaggctcagattctagaacTcccatatgctggagatgtta	9	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	18	61569726	61569726	T	A	SNP	SERPINB2	ENST00000299502	human	ensembl	69_37n	1	known	missense	c.767	p.L256H	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632	97	0	0	115	47	28.83	-	-	-	A	61569726	T	A	61569726	3	1	708	1	0	0	0	0	1	0	0	0	14189	1551	54	5	789	5	SERPINB2	18	61569726	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1327999	61569726	16507522	748	62038										
PTBP1	0	genome.wustl.edu	37	chr19	804187	804187	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggaaggtcaccaacctcctGatgctgaaggggaaaaacca	12	10	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	804187	804187	G	T	SNP	PTBP1	ENST00000356948	human	ensembl	69_37n	1	known	silent	c.267	p.L89	0.998	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304	50	0	0	57	9	13.64	-	-	-	T	804187	G	T	804187	2	4	708	1	0	0	0	0	0	0	0	1	12805	1277	45	2		2	PTBP1	19	804187	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		804187	58324796	749	62039										
LPPR3	0	genome.wustl.edu	37	chr19	814468	814468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcccgccccgatgaggaagCcggcatacacgtccacaggg	13	15	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	814468	814468	C	T	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	missense	c.881	p.G294D	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	21	0	0	21	6	22.22	-	-	-	T	814468	C	T	814468	3	4	708	1	0	0	0	0	1	0	0	0	8992	739	26	4	1367	4	LPPR3	19	814468	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	10281	814468	58314515	750	62040										
SF3A2	0	genome.wustl.edu	37	chr19	2247002	2247002	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcatggccgccgagccctAcgagaccattgccttcaagg	11	15	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	2247002	2247002	A	G	SNP	SF3A2	ENST00000221494	human	ensembl	69_37n	1	known	missense	c.527	p.Y176C	0.998	NULL	smart_Znf_U1,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A2	HGNC	ENSG00000104897	32	0	0	31	6	15.79	-	-	-	G	2247002	A	G	2247002	3	3	708	1	0	0	0	0	1	0	0	0	14235	391	14	5	549	5	SF3A2	19	2247002	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1432534	2247002	56881981	751	62041										
SPPL2B	0	genome.wustl.edu	37	chr19	2344416	2344416	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctcggactcagccacccgTgagaaggtgtgtcttctgac	11	14	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	2344416	2344416	T	C	SNP	SPPL2B	ENST00000452401	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.756	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206	67	0	0	48	31	39.24	-	-	-	C	2344416	T	C	2344416	1	2	708	0	1	0	0	0	0	0	0	0	15180	1683	59	5		5	SPPL2B	19	2344416	RNA	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	97414	2344416	56784567	752	62042										
DIRAS1	0	genome.wustl.edu	37	chr19	2717406	2717406	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgggccaccgcctgcgcctcGcgcgtgtccacctcccgctg	12	20	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	2717406	2717406	G	A	SNP	DIRAS1	ENST00000323469	human	ensembl	69_37n	-1	known	silent	c.399	p.R133	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS1	HGNC	ENSG00000176490	42	0	0	39	8	17.02	-	-	-	A	2717406	G	A	2717406	2	1	708	1	0	0	0	0	0	0	0	1	4566	1074	38	1		1	DIRAS1	19	2717406	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	372990	2717406	56411577	753	62043										
TRIP10	0	genome.wustl.edu	37	chr19	6750563	6750563	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagagagccaggacacccccAtttacacggagtttgatgag	11	10	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	6750563	6750563	A	G	SNP	TRIP10	ENST00000313244	human	ensembl	69_37n	1	known	missense	c.1576	p.I526V	0.999	superfamily_SH3_domain	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	77	0	0	73	25	25.51	-	-	-	G	6750563	A	G	6750563	3	3	708	1	0	0	0	0	1	0	0	0	16650	217	8	5	1458	5	TRIP10	19	6750563	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4033157	6750563	52378420	754	62044										
MUC16	0	genome.wustl.edu	37	chr19	9066859	9066859	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtcagtatctcatgtgaggTactgctcaaatttggaggtg	12	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	9066859	9066859	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.20587	p.T6863A	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	182	1	0.54	234	42	15	-	-	-	C	9066859	T	C	9066859	3	2	708	1	0	0	0	0	1	0	0	0	10045	1638	57	5	23264	5	MUC16	19	9066859	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2316296	9066859	50062124	755	62045										
MUC16	0	genome.wustl.edu	37	chr19	9077821	9077821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctgggttccttggagctcaTgattttgagagtggtagaca	14	6	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	9077821	9077821	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.9625	p.M3209V	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	83	0	0	60	32	34.41	-	-	-	C	9077821	T	C	9077821	3	2	708	1	0	0	0	0	1	0	0	0	10045	1464	51	5	34226	5	MUC16	19	9077821	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	10962	9077821	50051162	756	62046										
MUC16	0	genome.wustl.edu	37	chr19	9083271	9083271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcactggtgggcttcacaggTatccctttgggtgctgttga	14	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	9083271	9083271	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.8544	p.I2848M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	176	1	0.56	125	73	36.5	-	-	-	C	9083271	T	C	9083271	3	2	708	1	0	0	0	0	1	0	0	0	10045	1628	57	5	35315	5	MUC16	19	9083271	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5450	9083271	50045712	757	62047										
EIF3G	0	genome.wustl.edu	37	chr19	10229396	10229396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggtctcaatcctgaaggtgCggacaatctgaggatgggag	16	7	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	10229396	10229396	C	T	SNP	EIF3G	ENST00000253108	human	ensembl	69_37n	-1	known	missense	c.248	p.R83H	1.000	pfam_eIF3g_N,pirsf_Transl_init_eIF-3_G	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_Transl_init_eIF-3_G,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811	35	0	0	26	19	42.22	-	-	-	T	10229396	C	T	10229396	3	4	708	1	0	0	0	0	1	0	0	0	5054	768	27	1	742	1	EIF3G	19	10229396	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1146125	10229396	48899587	758	62048										
ZNF878	0	genome.wustl.edu	37	chr19	12154701	12154701	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cattgcttacactcatagggTttctctccagtatgaatcct	6	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	12154701	12154701	T	C	SNP	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	silent	c.1515	p.K505	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	68	0	0	84	22	20.75	-	-	-	C	12154701	T	C	12154701	2	2	708	1	0	0	0	0	0	0	0	1	18289	1722	60	5		5	ZNF878	19	12154701	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1925305	12154701	46974282	759	62049										
MAN2B1	0	genome.wustl.edu	37	chr19	12769127	12769127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaactggtgggggccatccgCgtaagggaagaagtcgtcat	16	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	12769127	12769127	C	T	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	missense	c.1141	p.A381T	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	49	0	0	55	18	24.66	-	-	-	T	12769127	C	T	12769127	3	4	708	1	0	0	0	0	1	0	0	0	9287	768	27	1	1958	1	MAN2B1	19	12769127	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	614426	12769127	46359856	760	62050										
CLEC17A	0	genome.wustl.edu	37	chr19	14705311	14705311	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctcagcccagccctcacccTgagcttctcttctccaggtt	6	19	4	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	14705311	14705311	T	C	SNP	CLEC17A	ENST00000397439	human	ensembl	69_37n	1	known	missense	c.209	p.L70P	0.001	NULL	superfamily_C-type_lectin_fold	-	no_errors	CLEC17A	HGNC	ENSG00000187912	130	0	0	130	40	23.53	-	-	-	C	14705311	T	C	14705311	3	2	708	1	0	0	0	0	1	0	0	0	3531	1580	55	5	223	5	CLEC17A	19	14705311	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1936184	14705311	44423672	761	62051										
BRD4	0	genome.wustl.edu	37	chr19	15366911	15366911	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgctattatttttcttcgtcTttttaggaggaggttccttg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	15366911	15366911	T	-	DEL	BRD4	ENST00000263377	human	ensembl	69_37n	-1	known	frame_shift_del	c.1715	p.K572fs	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867	493	0	0	555	156	21.67	-	-	-	-	15366911	T	-	15366911	7	5	708	1	0	1	0	1	0	0	0	0	1512	1609	56	0	2436	0	BRD4	19	15366911	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	661600	15366911	43762072	762	62052										
GTPBP3	0	genome.wustl.edu	37	chr19	17449407	17449407	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcaccagacgggcgttcgccAatgggaagctgaacctgacc	12	13	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	17449407	17449407	A	G	SNP	GTPBP3	ENST00000358792	human	ensembl	69_37n	1	known	missense	c.448	p.N150D	0.988	pfam_GTP-bd_TrmE_N	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299	36	0	0	42	13	23.64	-	-	-	G	17449407	A	G	17449407	3	3	708	1	0	0	0	0	1	0	0	0	6932	130	5	5	462	5	GTPBP3	19	17449407	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2082496	17449407	41679576	763	62053										
UBA52	0	genome.wustl.edu	37	chr19	18685757	18685757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gccagcttgcccagaaatacAactgcgacaagatgatctgc	9	12	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	18685757	18685757	A	T	SNP	UBA52	ENST00000430157	human	ensembl	69_37n	1	known	missense	c.268	p.N90Y	1.000	pfam_Ribosomal_L40e	pfam_Ubiquitin,pfam_Ribosomal_L40e,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBA52	HGNC	ENSG00000221983	41	0	0	54	12	18.18	-	-	-	T	18685757	A	T	18685757	3	4	708	1	0	0	0	0	1	0	0	0	16928	130	5	5	278	5	UBA52	19	18685757	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1236350	18685757	40443226	764	62054										
ZNF714	0	genome.wustl.edu	37	chr19	21300912	21300912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tactggagagaaatcttacaAatgtgaagaatgtggtaaag	11	3	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	21300912	21300912	A	G	SNP	ZNF714	ENST00000291770	human	ensembl	69_37n	1	known	missense	c.1442	p.K481R	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352	83	0	0	86	34	28.33	-	-	-	G	21300912	A	G	21300912	3	3	708	1	0	0	0	0	1	0	0	0	18214	14	1	5	1452	5	ZNF714	19	21300912	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2615155	21300912	37828071	765	62055										
ZNF493	0	genome.wustl.edu	37	chr19	21607594	21607594	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataattcatactggagagaaAccttgcaaatgtgaagaatg	9	5	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	21607594	21607594	A	G	SNP	ZNF493	ENST00000355504	human	ensembl	69_37n	1	known	silent	c.1749	p.K583	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF493	HGNC	ENSG00000196268	29	0	0	26	11	29.73	-	-	-	G	21607594	A	G	21607594	2	3	708	1	0	0	0	0	0	0	0	1	18040	40	2	5		5	ZNF493	19	21607594	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	306682	21607594	37521389	766	62056										
ZNF429	0	genome.wustl.edu	37	chr19	21720017	21720017	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcaagacttactcgacatAaaaaaattcatactggagag							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	21720017	21720017	A	-	DEL	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	frame_shift_del	c.1162	p.I390fs	0.374	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	34	0	0	50	11	17.46	-	-	-	-	21720017	A	-	21720017	7	5	708	1	0	1	0	1	0	0	0	0	17998	363	13	0	1176	0	ZNF429	19	21720017	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	112423	21720017	37408966	767	62057										
RBM42	0	genome.wustl.edu	37	chr19	36128363	36128363	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggaagtatgtgggctcgcgCcccatcaagcttcgcaagag	14	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	36128363	36128363	C	T	SNP	RBM42	ENST00000262633	human	ensembl	69_37n	1	known	silent	c.1350	p.R450	0.886	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254	50	0	0	44	32	41.56	-	-	-	T	36128363	C	T	36128363	2	4	708	1	0	0	0	0	0	0	0	1	13219	726	26	4		4	RBM42	19	36128363	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	14408346	36128363	23000620	768	62058										
ZNF790	0	genome.wustl.edu	37	chr19	37309789	37309789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttctgaaccacgaaaaaagGtctttccacattccttacat	5	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	37309789	37309789	G	A	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1457	p.T486I	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	77	0	0	77	29	27.36	-	-	-	A	37309789	G	A	37309789	3	1	708	1	0	0	0	0	1	0	0	0	18255	1261	44	4	457	4	ZNF790	19	37309789	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1181426	37309789	21819194	769	62059										
ZNF573	0	genome.wustl.edu	37	chr19	38283282	38283282	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgtagatgacattaatgctgAtaagaatatctcttctgcac	7	7	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	38283282	38283282	A	C	SNP	ZNF573	ENST00000480587	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.952	-	-	-	no_errors	ZNF573	HGNC	ENSG00000189144	62	0	0	79	23	22.55	-	-	-	C	38283282	A	C	38283282	1	2	708	0	1	0	0	0	0	0	0	0	18101	348	12	5		5	ZNF573	19	38283282	RNA	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	973493	38283282	20845701	770	62060										
RYR1	0	genome.wustl.edu	37	chr19	38998429	38998429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcctgcagcagctgctgcGctggatggacatttctcagg	12	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	38998429	38998429	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.8894	p.R2965H	0.935	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	80	0	0	77	35	31.25	-	-	-	A	38998429	G	A	38998429	3	1	708	1	0	0	0	0	1	0	0	0	13854	1087	38	1	9124	1	RYR1	19	38998429	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	715147	38998429	20130554	771	62061										
IL29	0	genome.wustl.edu	37	chr19	39788881	39788881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcagcccacagcagggcccaGgccccggggccgcctccacc	12	21	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	39788881	39788881	G	A	SNP	IL29	ENST00000333625	human	ensembl	69_37n	1	known	missense	c.422	p.R141K	0.000	NULL	NULL	-	no_errors	IL29	HGNC	ENSG00000182393	39	0	0	33	11	25	-	-	-	A	39788881	G	A	39788881	3	1	708	1	0	0	0	0	1	0	0	0	7739	1000	35	4	436	4	IL29	19	39788881	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	790452	39788881	19340102	772	62062										
ZFP36	0	genome.wustl.edu	37	chr19	39898539	39898539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcctggccgctccaccagcCtagtggagggccgcagctgt	14	15	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	39898539	39898539	C	A	SNP	ZFP36	ENST00000248673	human	ensembl	69_37n	1	known	missense	c.181	p.L61I	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016	9	0	0	3	7	70	-	-	-	A	39898539	C	A	39898539	3	1	708	1	0	0	0	0	1	0	0	0	17741	680	24	4	187	4	ZFP36	19	39898539	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	109658	39898539	19230444	773	62063										
PLEKHG2	0	genome.wustl.edu	37	chr19	39915425	39915425	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccacacctttacctgagagaGgaggctctctagacattcag	9	12	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	39915425	39915425	G	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	nonsense	c.3652	p.G1218*	0.003	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	45	0	0	56	25	30.86	-	-	-	T	39915425	G	T	39915425	4	4	708	1	0	0	0	0	0	1	0	0	12143	1001	35	4	3722	4	PLEKHG2	19	39915425	Nonsense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	16886	39915425	19213558	774	62064										
SUPT5H	0	genome.wustl.edu	37	chr19	39959502	39959502	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcttcgccatgtctgctgtgGtgagggtcccagaggggtgt	17	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	39959502	39959502	G	C	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	splice_site	c.1143+1	e13+1	1.000	-	-	-	no_errors	SUPT5H	HGNC	ENSG00000196235	87	0	0	100	36	26.47	-	-	-	C	39959502	G	C	39959502	5	2	708	1	0	0	0	0	0	0	1	0	15490	1275	44	4	1194	4	SUPT5H	19	39959502	Splice_Site	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	44077	39959502	19169481	775	62065										
ZNF780B	0	genome.wustl.edu	37	chr19	40540643	40540643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttcagtaagctggtaatgaTatctaaaggtcttcctacac	8	8	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	40540643	40540643	T	C	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	missense	c.2123	p.Y708C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	54	0	0	60	23	27.71	-	-	-	C	40540643	T	C	40540643	3	2	708	1	0	0	0	0	1	0	0	0	18246	1406	49	5	382	5	ZNF780B	19	40540643	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	581141	40540643	18588340	776	62066										
PRX	0	genome.wustl.edu	37	chr19	40902398	40902399	+	Frame_Shift_Ins	INS	-	-	T													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggacttttggaagctgcacINSttctgggaggtgcacatcgg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	40902398	40902399	-	T	INS	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1861_1860	p.V620fs	0.018:0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	60	0	0	83	18	17.82	-	-	-	T	40902399	-	T	40902398	7	5	708	1	0	1	1	0	0	0	0	0	12722	565	20	0	2528	0	PRX	19	40902398	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	361755	40902398	18226585	777	62067										
SHKBP1	0	genome.wustl.edu	37	chr19	41095083	41095083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtctctcatctactgggcagCggtgaggacagtcctgtcca	12	12	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	41095083	41095083	C	T	SNP	SHKBP1	ENST00000291842	human	ensembl	69_37n	1	known	missense	c.1588	p.R530W	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410	56	0	0	51	27	34.62	-	-	-	T	41095083	C	T	41095083	3	4	708	1	0	0	0	0	1	0	0	0	14373	782	27	1	1646	1	SHKBP1	19	41095083	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	192685	41095083	18033900	778	62068										
CYP2S1	0	genome.wustl.edu	37	chr19	41707175	41707175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagaattcaccaacaagaacAtgctgatgacagtcatttat	6	9	2	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	41707175	41707175	A	G	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	1	known	missense	c.874	p.M292V	0.696	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	65	0	0	79	30	27.52	-	-	-	G	41707175	A	G	41707175	3	3	708	1	0	0	0	0	1	0	0	0	4205	217	8	5	896	5	CYP2S1	19	41707175	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	612092	41707175	17421808	779	62069										
BCKDHA	0	genome.wustl.edu	37	chr19	41920064	41920064	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggccagtaccgggaggcaggTacgtctgtccgtggtttggc	17	10	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	41920064	41920064	T	C	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	1	known	splice_site	c.484+2	e4+2	1.000	-	-	-	no_errors	BCKDHA	HGNC	ENSG00000248098	13	0	0	13	5	27.78	-	-	-	C	41920064	T	C	41920064	5	2	708	1	0	0	0	0	0	0	1	0	1363	1652	57	5	500	5	BCKDHA	19	41920064	Splice_Site	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	212889	41920064	17208919	780	62070										
PSG3	0	genome.wustl.edu	37	chr19	43233410	43233410	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcctgatagctgaaacttccCattaattgtccaagaatatt	5	9	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	43233410	43233410	C	G	SNP	PSG3	ENST00000327495	human	ensembl	69_37n	-1	known	missense	c.1108	p.G370R	0.019	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG3	HGNC	ENSG00000221826	215	0	0	233	93	28.53	-	-	-	G	43233410	C	G	43233410	3	3	708	1	0	0	0	0	1	0	0	0	12736	594	21	4	186	4	PSG3	19	43233410	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1313346	43233410	15895573	781	62071										
CADM4	0	genome.wustl.edu	37	chr19	44127494	44127494	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggatagggtcagatgaagaaTtcctctttcctcttgtgtcc	10	9	3	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	44127494	44127494	T	C	SNP	CADM4	ENST00000222374	human	ensembl	69_37n	-1	known	silent	c.1155	p.E385	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM4	HGNC	ENSG00000105767	69	0	0	80	34	29.82	-	-	-	C	44127494	T	C	44127494	2	2	708	1	0	0	0	0	0	0	0	1	2594	1490	52	5		5	CADM4	19	44127494	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	894084	44127494	15001489	782	62072										
ZNF235	0	genome.wustl.edu	37	chr19	44792421	44792421	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actctgcaatgaatgttaagAtctgtgctacgactgaagcc	9	9	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	44792421	44792421	A	G	SNP	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	silent	c.1167	p.D389	0.068	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	85	0	0	116	52	30.95	-	-	-	G	44792421	A	G	44792421	2	3	708	1	0	0	0	0	0	0	0	1	17884	330	12	5		5	ZNF235	19	44792421	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	664927	44792421	14336562	783	62073										
TOMM40	0	genome.wustl.edu	37	chr19	45404306	45404306	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaacaactggttggcaacggTaacgttgggccaggcgggca	16	9	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	45404306	45404306	T	C	SNP	TOMM40	ENST00000252487	human	ensembl	69_37n	1	known	missense	c.788	p.V263A	0.152	pfam_Porin_Euk	pfam_Porin_Euk	-	no_errors	TOMM40	HGNC	ENSG00000130204	90	0	0	46	34	41.98	-	-	-	C	45404306	T	C	45404306	3	2	708	1	0	0	0	0	1	0	0	0	16453	1638	57	5	814	5	TOMM40	19	45404306	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	611885	45404306	13724677	784	62074										
ERCC1	0	genome.wustl.edu	37	chr19	45918179	45918179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccgctggtttctgctcataGgccttgtaggtctccaggta	11	11	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	45918179	45918179	G	T	SNP	ERCC1	ENST00000592444	human	ensembl	69_37n	-1	novel	missense	c.79	p.L27I	0.994	superfamily_Restrct_endonuc-II-like	superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERCC1	HGNC	ENSG00000012061	68	0	0	32	41	56.16	-	-	-	T	45918179	G	T	45918179	3	4	708	1	0	0	0	0	1	0	0	0	5249	987	35	4	396	4	ERCC1	19	45918179	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	513873	45918179	13210804	785	62075										
CCDC61	0	genome.wustl.edu	37	chr19	46520507	46520507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gttactcctttttctcagggGtcaccgccgccgtgggaagc	12	13	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	46520507	46520507	G	A	SNP	CCDC61	ENST00000263284	human	ensembl	69_37n	1	known	missense	c.1370	p.G457D	0.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983	54	0	0	30	17	35.42	-	-	-	A	46520507	G	A	46520507	3	1	708	1	0	0	0	0	1	0	0	0	2859	1261	44	4	1420	4	CCDC61	19	46520507	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	602328	46520507	12608476	786	62076										
PPFIA3	0	genome.wustl.edu	37	chr19	49644722	49644722	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggccactgaccctctggggcTagccaagctgacaggcccag	13	15	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	49644722	49644722	T	C	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	missense	c.2414	p.L805P	0.969	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	48	0	0	22	19	46.34	-	-	-	C	49644722	T	C	49644722	3	2	708	1	0	0	0	0	1	0	0	0	12384	1522	53	5	2484	5	PPFIA3	19	49644722	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3124215	49644722	9484261	787	62077										
TBC1D17	0	genome.wustl.edu	37	chr19	50387588	50387588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggggctgggcctgctgaacgAtatcctcctcacctactgca	11	14	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	50387588	50387588	A	G	SNP	TBC1D17	ENST00000221543	human	ensembl	69_37n	1	known	missense	c.1205	p.D402G	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946	71	0	0	45	38	45.24	-	-	-	G	50387588	A	G	50387588	3	3	708	1	0	0	0	0	1	0	0	0	15698	333	12	5	1247	5	TBC1D17	19	50387588	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	742866	50387588	8741395	788	62078										
NR1H2	0	genome.wustl.edu	37	chr19	50881064	50881064	+	Frame_Shift_Del	DEL	G	G	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agggtccggagccgtggcccGggggtccggaccctgatgtc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	50881064	50881064	G	-	DEL	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	frame_shift_del	c.118	p.G41fs	0.058	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	49	0	0	29	14	31.11	-	-	-	-	50881064	G	-	50881064	7	5	708	1	0	1	0	1	0	0	0	0	10690	1116	39	0	124	0	NR1H2	19	50881064	Frame_Shift_Del	DEL	G	TCGA-D8-A1XK-01A-21D-A14K-09	493476	50881064	8247919	789	62079										
ZNF175	0	genome.wustl.edu	37	chr19	52090234	52090234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgaacggtcagaatgaaaGcaatgacacagaacagcttg	11	7	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	52090234	52090234	G	A	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	missense	c.650	p.S217N	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	51	0	0	59	21	26.25	-	-	-	A	52090234	G	A	52090234	3	1	708	1	0	0	0	0	1	0	0	0	17841	971	34	4	664	4	ZNF175	19	52090234	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1209170	52090234	7038749	790	62080										
LILRA2	0	genome.wustl.edu	37	chr19	55085971	55085971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catccatcacctgggaacacGcagggcggtatcactgtcag	11	13	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	55085971	55085971	G	A	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	1	known	missense	c.274	p.A92T	0.295	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	88	0	0	115	45	28.12	-	-	-	A	55085971	G	A	55085971	3	1	708	1	0	0	0	0	1	0	0	0	8840	1087	38	1	284	1	LILRA2	19	55085971	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	2995737	55085971	4043012	791	62081										
NLRP13	0	genome.wustl.edu	37	chr19	56443489	56443489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaggacagattcaaagggtcGgcagctctcaagtttgccca	11	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	56443489	56443489	G	A	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	silent	c.189	p.A63	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	31	0	0	45	12	21.05	-	-	-	A	56443489	G	A	56443489	2	1	708	1	0	0	0	0	0	0	0	1	10547	1103	39	1		1	NLRP13	19	56443489	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1357518	56443489	2685494	792	62082										
NLRP5	0	genome.wustl.edu	37	chr19	56520208	56520208	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgaccaaggaccaagcaaggAaaaagtgccaggttagaggg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	56520208	56520208	A	-	DEL	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	frame_shift_del	c.497	p.V168fs	0.021	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	90	0	0	106	27	20.15	-	-	-	-	56520208	A	-	56520208	7	5	708	1	0	1	0	1	0	0	0	0	10552	246	9	0	507	0	NLRP5	19	56520208	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	76719	56520208	2608775	793	62083										
PEG3	0	genome.wustl.edu	37	chr19	57327372	57327372	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacgaactctctgatggttgAtagcatcgaagctctgaatg	10	9	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	57327372	57327372	A	G	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.2438	p.I813T	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	58	0	0	70	35	33.33	-	-	-	G	57327372	A	G	57327372	3	3	708	1	0	0	0	0	1	0	0	0	11793	333	12	5	2332	5	PEG3	19	57327372	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	807164	57327372	1801611	794	62084										
ZNF805	0	genome.wustl.edu	37	chr19	57765284	57765284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtggcaccagcagactcataCcggggagaagccctatgagt	13	11	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	57765284	57765284	C	T	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	missense	c.1097	p.T366I	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	86	0	0	102	34	25	-	-	-	T	57765284	C	T	57765284	3	4	708	1	0	0	0	0	1	0	0	0	18265	507	18	4	1111	4	ZNF805	19	57765284	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	437912	57765284	1363699	795	62085										
ZNF773	0	genome.wustl.edu	37	chr19	58018211	58018211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gagaaaggccttatgggtgtAgtgactgtggaaaatccttt	13	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	58018211	58018211	A	G	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	1	known	missense	c.748	p.S250G	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	94	0	0	94	35	26.92	-	-	-	G	58018211	A	G	58018211	3	3	708	1	0	0	0	0	1	0	0	0	18239	420	15	5	762	5	ZNF773	19	58018211	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	252927	58018211	1110772	796	62086										
ZNF530	0	genome.wustl.edu	37	chr19	58115681	58115681	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgaggatgtggccatttacTtctcccaggaggagtgggag	15	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	58115681	58115681	T	G	SNP	ZNF530	ENST00000332854	human	ensembl	69_37n	1	known	missense	c.67	p.F23V	0.940	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647	193	0	0	258	105	28.93	-	-	-	G	58115681	T	G	58115681	3	3	708	1	0	0	0	0	1	0	0	0	18067	1609	56	5	73	5	ZNF530	19	58115681	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	97470	58115681	1013302	797	62087										
ZSCAN22	0	genome.wustl.edu	37	chr19	58846472	58846472	+	Frame_Shift_Del	DEL	C	C	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agcagttcctgggtgcgctgCccccagagatccaagcctgg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	19	58846472	58846472	C	-	DEL	ZSCAN22	ENST00000329665	human	ensembl	69_37n	1	known	frame_shift_del	c.304	p.P103fs	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN22	HGNC	ENSG00000182318	31	0	0	32	11	25	-	-	-	-	58846472	C	-	58846472	7	5	708	1	0	1	0	1	0	0	0	0	18326	739	26	0	306	0	ZSCAN22	19	58846472	Frame_Shift_Del	DEL	C	TCGA-D8-A1XK-01A-21D-A14K-09	730791	58846472	282511	798	62088										
PDYN	0	genome.wustl.edu	37	chr20	1961210	1961210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atttgcgcaaaaagcccccaTagcgtttgacctgctccttg	8	13	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	1961210	1961210	T	C	SNP	PDYN	ENST00000217305	human	ensembl	69_37n	-1	known	missense	c.524	p.Y175C	1.000	prints_Opioid_neupept	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327	81	0	0	55	43	43.88	-	-	-	C	1961210	T	C	1961210	3	2	708	1	0	0	0	0	1	0	0	0	11772	1406	49	5	244	5	PDYN	20	1961210	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09		1961210	61064310	799	62089										
MRPS26	0	genome.wustl.edu	37	chr20	3028480	3028480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actgggccatcaccagagagGggctggtggtcaggccacaa	15	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	3028480	3028480	G	T	SNP	MRPS26	ENST00000380325	human	ensembl	69_37n	1	known	missense	c.583	p.G195W	0.999	NULL	NULL	-	no_errors	MRPS26	HGNC	ENSG00000125901	25	0	0	29	13	30.95	-	-	-	T	3028480	G	T	3028480	3	4	708	1	0	0	0	0	1	0	0	0	9909	1232	43	4	597	4	MRPS26	20	3028480	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1067270	3028480	59997040	800	62090										
CRLS1	0	genome.wustl.edu	37	chr20	6012717	6012717	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctaggttaaaaccaacattCatcagcaaggtaagagaatg	9	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	6012717	6012717	C	A	SNP	CRLS1	ENST00000378863	human	ensembl	69_37n	1	known	missense	c.720	p.F240L	1.000	NULL	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766	126	0	0	75	53	41.41	-	-	-	A	6012717	C	A	6012717	3	1	708	1	0	0	0	0	1	0	0	0	3919	825	29	2	751	2	CRLS1	20	6012717	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2984237	6012717	57012803	801	62091										
SPTLC3	0	genome.wustl.edu	37	chr20	13145424	13145424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttagaagctcttgatgaaatGggtgatctcttgcaactgaa	10	6	2	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	13145424	13145424	G	T	SNP	SPTLC3	ENST00000399002	human	ensembl	69_37n	1	known	missense	c.1569	p.M523I	0.917	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC3	HGNC	ENSG00000172296	84	0	0	70	44	38.26	-	-	-	T	13145424	G	T	13145424	3	4	708	1	0	0	0	0	1	0	0	0	15216	1348	47	4	1615	4	SPTLC3	20	13145424	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	7132707	13145424	49880096	802	62092										
PCSK2	0	genome.wustl.edu	37	chr20	17462282	17462282	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	actcacaaccgacgcctgtgAggggaaggaaaattttgtcc	11	10	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	17462282	17462282	A	C	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	1	known	missense	c.1484	p.E495A	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	64	0	0	83	11	11.7	-	-	-	C	17462282	A	C	17462282	3	2	708	1	0	0	0	0	1	0	0	0	11674	304	11	5	1530	5	PCSK2	20	17462282	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4316858	17462282	45563238	803	62093										
CSRP2BP	0	genome.wustl.edu	37	chr20	18131569	18131569	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttattgagaaacattggacTtttttactagggaataggta							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	18131569	18131569	T	-	DEL	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	frame_shift_del	c.483	p.L163fs	0.823	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	97	0	0	85	50	37.04	-	-	-	-	18131569	T	-	18131569	7	5	708	1	0	1	0	1	0	0	0	0	4000	1596	56	0	493	0	CSRP2BP	20	18131569	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	669287	18131569	44893951	804	62094										
CSRP2BP	0	genome.wustl.edu	37	chr20	18165347	18165347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcatggttcctgatgtgaaaTacaatgaagcttacatttca	7	7	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	18165347	18165347	T	C	SNP	CSRP2BP	ENST00000278816	human	ensembl	69_37n	1	known	missense	c.2086	p.Y696H	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	138	0	0	123	84	40.58	-	-	-	C	18165347	T	C	18165347	3	2	708	1	0	0	0	0	1	0	0	0	4000	1406	49	5	2120	5	CSRP2BP	20	18165347	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	33778	18165347	44860173	805	62095										
GZF1	0	genome.wustl.edu	37	chr20	23350233	23350233	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcctcaggggagcgtccctActgctgtgaccagtgcggca	14	13	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	23350233	23350233	A	G	SNP	GZF1	ENST00000338121	human	ensembl	69_37n	1	known	missense	c.1640	p.Y547C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	20	0	0	12	12	50	-	-	-	G	23350233	A	G	23350233	3	3	708	1	0	0	0	0	1	0	0	0	6965	391	14	5	1654	5	GZF1	20	23350233	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5184886	23350233	39675287	806	62096										
PDRG1	0	genome.wustl.edu	37	chr20	30534319	30534319	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgggcctcaaaaaggcggTtgaccttcactttaagttgc	10	10	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	30534319	30534319	T	C	SNP	PDRG1	ENST00000202017	human	ensembl	69_37n	-1	known	missense	c.299	p.N100S	0.999	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356	88	0	0	82	43	34.13	-	-	-	C	30534319	T	C	30534319	3	2	708	1	0	0	0	0	1	0	0	0	11763	1725	60	5	110	5	PDRG1	20	30534319	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	7184086	30534319	32491201	807	62097										
EMILIN3	0	genome.wustl.edu	37	chr20	39990972	39990972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcatccccggccggggcacCggggcccctttgggtctcgg	15	17	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	39990972	39990972	C	T	SNP	EMILIN3	ENST00000332312	human	ensembl	69_37n	-1	known	missense	c.1237	p.G413S	0.000	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798	26	0	0	15	12	44.44	-	-	-	T	39990972	C	T	39990972	3	4	708	1	0	0	0	0	1	0	0	0	5132	652	23	1	1067	1	EMILIN3	20	39990972	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	9456653	39990972	23034548	808	62098										
SEMG1	0	genome.wustl.edu	37	chr20	43836194	43836194	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cccgaaaaagtcagcaatatGatttgaatgccctacataag	7	9	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	43836194	43836194	G	C	SNP	SEMG1	ENST00000372781	human	ensembl	69_37n	1	known	missense	c.256	p.D86H	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233	100	0	0	76	47	38.21	-	-	-	C	43836194	G	C	43836194	3	2	708	1	0	0	0	0	1	0	0	0	14132	1290	45	2	262	2	SEMG1	20	43836194	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3845222	43836194	19189326	809	62099										
FAM65C	0	genome.wustl.edu	37	chr20	49214207	49214207	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctccaggatgcactccatcAggctctcggccgaggtgtgc	12	14	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	49214207	49214207	A	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.1700	p.L567P	1.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	32	0	0	10	7	38.89	-	-	-	G	49214207	A	G	49214207	3	3	708	1	0	0	0	0	1	0	0	0	5646	188	7	5	1188	5	FAM65C	20	49214207	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5378013	49214207	13811313	810	62100										
ZNF217	0	genome.wustl.edu	37	chr20	52198048	52198048	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctcagatccgtcttcagaacCaccttcccctcgatccacgg	6	18	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	52198048	52198048	C	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.1318	p.G440C	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	35	0	0	34	5	12.82	-	-	-	A	52198048	C	A	52198048	3	1	708	1	0	0	0	0	1	0	0	0	17868	594	21	4	1844	4	ZNF217	20	52198048	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2983841	52198048	10827472	811	62101										
CSTF1	0	genome.wustl.edu	37	chr20	54978696	54978696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacaatattgtacgctgcatAgtgcactcccccaccaaccc	5	16	0	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	54978696	54978696	A	G	SNP	CSTF1	ENST00000217109	human	ensembl	69_37n	1	known	missense	c.1209	p.I403M	0.174	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CSTF1	HGNC	ENSG00000101138	69	0	0	100	32	24.24	-	-	-	G	54978696	A	G	54978696	3	3	708	1	0	0	0	0	1	0	0	0	4015	410	15	5	1227	5	CSTF1	20	54978696	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2780648	54978696	8046824	812	62102										
LAMA5	0	genome.wustl.edu	37	chr20	60904938	60904938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accaccagggtgcggcagccGtagccatgtggacagaagct	14	12	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	60904938	60904938	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	silent	c.4014	p.Y1338	0.925	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	20	0	0	6	9	60	-	-	-	A	60904938	G	A	60904938	2	1	708	1	0	0	0	0	0	0	0	1	8663	1140	40	1		1	LAMA5	20	60904938	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	5926242	60904938	2120582	813	62103										
LAMA5	0	genome.wustl.edu	37	chr20	60906104	60906104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttacctgttggggccaaaggCgccgtggctgctgatgcagc	15	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	60906104	60906104	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.3634	p.A1212T	0.001	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	29	0	0	22	8	26.67	-	-	-	T	60906104	C	T	60906104	3	4	708	1	0	0	0	0	1	0	0	0	8663	768	27	1	7661	1	LAMA5	20	60906104	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1166	60906104	2119416	814	62104										
DIDO1	0	genome.wustl.edu	37	chr20	61542836	61542836	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggctccagtgggtcagcctcCgcgtcccctgcgccctctcg	12	19	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	61542836	61542836	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	silent	c.129	p.A43	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	59	0	0	33	16	32.65	-	-	-	T	61542836	C	T	61542836	2	4	708	1	0	0	0	0	0	0	0	1	4558	639	23	1		1	DIDO1	20	61542836	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	636732	61542836	1482684	815	62105										
KCNQ2	0	genome.wustl.edu	37	chr20	62065196	62065196	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggtgaccgttcgctcgtagtActgccacgtggagtgcaggt	15	10	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	62065196	62065196	A	G	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.1084	p.Y362H	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	103	0	0	110	48	30.19	-	-	-	G	62065196	A	G	62065196	3	3	708	1	0	0	0	0	1	0	0	0	8137	391	14	5	1638	5	KCNQ2	20	62065196	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	522360	62065196	960324	816	62106										
GMEB2	0	genome.wustl.edu	37	chr20	62236137	62236137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggaggaggctgtgaaggccGcggcagctgctgccgctgca	19	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	62236137	62236137	G	A	SNP	GMEB2	ENST00000266068	human	ensembl	69_37n	-1	known	missense	c.188	p.A63V	0.853	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Sig_transdc_His_kin_Hpt_dom,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB2	HGNC	ENSG00000101216	59	0	0	46	28	37.33	-	-	-	A	62236137	G	A	62236137	3	1	708	1	0	0	0	0	1	0	0	0	6540	1087	38	1	1436	1	GMEB2	20	62236137	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	170941	62236137	789383	817	62107										
PRPF6	0	genome.wustl.edu	37	chr20	62659902	62659902	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacactcatggccaaggcgcTgcaggagtgccccaactccg	11	15	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	20	62659902	62659902	T	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.2411	p.L804Q	1.000	smart_HAT,pfscan_TPR-contain_dom	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	41	0	0	35	12	25.53	-	-	-	A	62659902	T	A	62659902	3	1	708	1	0	0	0	0	1	0	0	0	12655	1580	55	5	2481	5	PRPF6	20	62659902	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	423765	62659902	365618	818	62108										
RBM11	0	genome.wustl.edu	37	chr21	15588559	15588559	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccgtgtttgttgggaatttaGaggcccgagttcgggaagag	16	6	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	15588559	15588559	G	C	SNP	RBM11	ENST00000400577	human	ensembl	69_37n	1	known	missense	c.52	p.E18Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM11	HGNC	ENSG00000185272	55	0	0	81	18	18.18	-	-	-	C	15588559	G	C	15588559	3	2	708	1	0	0	0	0	1	0	0	0	13195	943	33	2	54	2	RBM11	21	15588559	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		15588559	32541336	819	62109										
KRTAP13-4	0	genome.wustl.edu	37	chr21	31802706	31802706	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagcactgccctctgctctcCcagcacctgccagctgcgtt	8	19	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	31802706	31802706	C	A	SNP	KRTAP13-4	ENST00000334068	human	ensembl	69_37n	1	known	missense	c.113	p.P38H	0.980	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-4	HGNC	ENSG00000186971	82	0	0	99	30	23.26	-	-	-	A	31802706	C	A	31802706	3	1	708	1	0	0	0	0	1	0	0	0	8578	623	22	4	115	4	KRTAP13-4	21	31802706	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	16214147	31802706	16327189	820	62110										
SON	0	genome.wustl.edu	37	chr21	34922290	34922290	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tttgcagcagcaccagtgccTactacaacactggtgttgaa	9	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	34922290	34922290	T	C	SNP	SON	ENST00000356577	human	ensembl	69_37n	1	known	silent	c.753	p.P251	0.096	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_errors	SON	HGNC	ENSG00000159140	29	0	0	21	9	30	-	-	-	C	34922290	T	C	34922290	2	2	708	1	0	0	0	0	0	0	0	1	15015	1509	53	5		5	SON	21	34922290	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3119584	34922290	13207605	821	62111										
SON	0	genome.wustl.edu	37	chr21	34926937	34926937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtaaaagttaaggacactcaCgaaaaaagcaagaaaaataa	7	5	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	34926937	34926937	C	T	SNP	SON	ENST00000436227	human	ensembl	69_37n	1	novel	missense	c.2384	p.T795M	1.000	NULL	pfam_G_patch_dom,pfam_Ds-RNA-bd,smart_G_patch_dom,smart_Ds-RNA-bd,pfscan_G_patch_dom,pfscan_Ds-RNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SON	HGNC	ENSG00000159140	18	0	0	25	9	25.71	-	-	-	T	34926937	C	T	34926937	3	4	708	1	0	0	0	0	1	0	0	0	15015	535	19	1	5410	1	SON	21	34926937	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	4647	34926937	13202958	822	62112										
ATP5O	0	genome.wustl.edu	37	chr21	35275852	35275852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agacaatctcccgcatagccCtgcccagcttctgaatcttg	7	15	3	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	35275852	35275852	C	A	SNP	ATP5O	ENST00000290299	human	ensembl	69_37n	-1	known	missense	c.620	p.R207M	0.921	pfam_ATPase_F1-cplx_OSCP/dsu,tigrfam_ATPase_F1-cplx_OSCP/dsu	pfam_ATPase_F1-cplx_OSCP/dsu,superfamily_ATPase_OSCP/delta_N,prints_ATPase_F1-cplx_OSCP/dsu,tigrfam_ATPase_F1-cplx_OSCP/dsu	-	no_errors	ATP5O	HGNC	ENSG00000241837	72	0	0	107	35	24.65	-	-	-	A	35275852	C	A	35275852	3	1	708	1	0	0	0	0	1	0	0	0	1166	681	24	4	25	4	ATP5O	21	35275852	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	348915	35275852	12854043	823	62113										
LCA5L	0	genome.wustl.edu	37	chr21	40778156	40778156	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgttactgagatgcttgccTgtactatgactgtacctcat	8	10	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	40778156	40778156	T	C	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	silent	c.1665	p.T555	0.000	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	80	0	0	149	54	26.6	-	-	-	C	40778156	T	C	40778156	2	2	708	1	0	0	0	0	0	0	0	1	8711	1567	55	5		5	LCA5L	21	40778156	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5502304	40778156	7351739	824	62114										
NDUFV3	0	genome.wustl.edu	37	chr21	44323880	44323880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaccacaatgcccagatctcAagtagatgaagagtttttga	8	8	1	5			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	44323880	44323880	A	G	SNP	NDUFV3	ENST00000354250	human	ensembl	69_37n	1	known	missense	c.758	p.Q253R	0.000	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194	41	0	0	37	13	26	-	-	-	G	44323880	A	G	44323880	3	3	708	1	0	0	0	0	1	0	0	0	10373	130	5	5	768	5	NDUFV3	21	44323880	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3545724	44323880	3806015	825	62115										
KRTAP10-4	0	genome.wustl.edu	37	chr21	45994019	45994019	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctgtgtgctgtgtgcccgtCtgctgtggggattcttcatg	14	10	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	45994019	45994019	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	1	known	silent	c.384	p.V128	0.083	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	219	0	0	161	75	31.78	-	-	-	T	45994019	C	T	45994019	2	4	708	1	0	0	0	0	0	0	0	1	8564	900	32	2		2	KRTAP10-4	21	45994019	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	1670139	45994019	2135876	826	62116										
COL18A1	0	genome.wustl.edu	37	chr21	46896297	46896297	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaacccaggctccccgcgccAccccccgtcaccacgccacc	6	25	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	21	46896297	46896297	A	G	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	silent	c.2076	p.P692	0.438	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	56	0	0	50	19	26.39	-	-	-	G	46896297	A	G	46896297	2	3	708	1	0	0	0	0	0	0	0	1	3705	146	6	5		5	COL18A1	21	46896297	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	902278	46896297	1233598	827	62117										
MTMR3	0	genome.wustl.edu	37	chr22	30415722	30415722	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctgaggggcagatggagaacAtcttgcaggaggccaccaaa	14	9	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	30415722	30415722	A	G	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.2074	p.I692V	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	41	0	0	51	23	31.08	-	-	-	G	30415722	A	G	30415722	3	3	708	1	0	0	0	0	1	0	0	0	10017	217	8	5	2132	5	MTMR3	22	30415722	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09		30415722	20888844	828	62118										
SF3A1	0	genome.wustl.edu	37	chr22	30736331	30736331	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagtaatgggggacacaagaTactcatctggagcaggggct	14	8	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	30736331	30736331	T	C	SNP	SF3A1	ENST00000215793	human	ensembl	69_37n	-1	known	missense	c.1229	p.Y410C	1.000	pfam_PRP21-like	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin,superfamily_Surp,smart_Surp,smart_Ubiquitin,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995	56	0	0	53	27	33.75	-	-	-	C	30736331	T	C	30736331	3	2	708	1	0	0	0	0	1	0	0	0	14234	1406	49	5	1184	5	SF3A1	22	30736331	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	320609	30736331	20568235	829	62119										
RNF215	0	genome.wustl.edu	37	chr22	30775714	30775714	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gctcacccaggacgttgaatTtgcacagtgggcaggtctgc	13	11	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	30775714	30775714	T	A	SNP	RNF215	ENST00000382363	human	ensembl	69_37n	-1	known	missense	c.1097	p.K366I	1.000	pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999	62	0	0	107	14	11.57	-	-	-	A	30775714	T	A	30775714	3	1	708	1	0	0	0	0	1	0	0	0	13565	1841	64	5	44	5	RNF215	22	30775714	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	39383	30775714	20528852	830	62120										
MYH9	0	genome.wustl.edu	37	chr22	36700141	36700141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtgggccagcacaccggcacGgaagaagactttgctctggc	14	12	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	36700141	36700141	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.2290	p.R764C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	36	0	0	26	14	35	-	-	-	A	36700141	G	A	36700141	3	1	708	1	0	0	0	0	1	0	0	0	10114	1116	39	1	3684	1	MYH9	22	36700141	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	5924427	36700141	14604425	831	62121										
CSNK1E	0	genome.wustl.edu	37	chr22	38694881	38694881	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agctgacgtaggtaagagtaGtcgggcttgtcgtcaaaccg	14	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	38694881	38694881	G	C	SNP	CSNK1E	ENST00000359867	human	ensembl	69_37n	-1	known	missense	c.795	p.D265E	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923	97	0	0	76	24	24	-	-	-	C	38694881	G	C	38694881	3	2	708	1	0	0	0	0	1	0	0	0	3985	1020	36	4	471	4	CSNK1E	22	38694881	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	1994740	38694881	12609685	832	62122										
SUN2	0	genome.wustl.edu	37	chr22	39137537	39137537	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttcttgaagaggtcttctgAgtcttgctgatgctctgctc	10	10	5	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	39137537	39137537	A	T	SNP	SUN2	ENST00000216064	human	ensembl	69_37n	-1	known	missense	c.1108	p.S370T	0.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	104	0	0	110	13	10.57	-	-	-	T	39137537	A	T	39137537	3	4	708	1	0	0	0	0	1	0	0	0	15483	304	11	5	1081	5	SUN2	22	39137537	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	442656	39137537	12167029	833	62123										
ENTHD1	0	genome.wustl.edu	37	chr22	40283459	40283459	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcttttagtgtttgaaggttAcagaacccctctctgcaatg	8	9	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	40283459	40283459	A	G	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	silent	c.294	p.C98	1.000	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	118	0	0	72	60	45.45	-	-	-	G	40283459	A	G	40283459	2	3	708	1	0	0	0	0	0	0	0	1	5174	389	14	5		5	ENTHD1	22	40283459	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	1145922	40283459	11021107	834	62124										
TNRC6B	0	genome.wustl.edu	37	chr22	40661353	40661353	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attcataacactgatggaccAaaaaatggaaacactaactc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	40661353	40661353	A	-	DEL	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	frame_shift_del	c.1119	p.N375fs	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	47	0	0	26	11	29.73	-	-	-	-	40661353	A	-	40661353	7	5	708	1	0	1	0	1	0	0	0	0	16436	117	5	0	1258	0	TNRC6B	22	40661353	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	377894	40661353	10643213	835	62125										
EP300	0	genome.wustl.edu	37	chr22	41568658	41568658	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaggaaaacaccagcaatgaAagcacagatgtaagggcatt	11	7	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	41568658	41568658	A	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.4608	p.E1536D	0.976	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	84	0	0	58	49	45.79	-	-	-	T	41568658	A	T	41568658	3	4	708	1	0	0	0	0	1	0	0	0	5185	11	1	5	4718	5	EP300	22	41568658	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	907305	41568658	9735908	836	62126										
TTC38	0	genome.wustl.edu	37	chr22	46669876	46669876	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggacaaagagctggacctggCtgtgaagacaatggtggaga	16	6	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	46669876	46669876	C	A	SNP	TTC38	ENST00000445282	human	ensembl	69_37n	1	known	missense	c.275	p.A92D	0.985	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	46	0	0	28	21	41.18	-	-	-	A	46669876	C	A	46669876	3	1	708	1	0	0	0	0	1	0	0	0	16803	797	28	4	289	4	TTC38	22	46669876	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	5101218	46669876	4634690	837	62127										
CELSR1	0	genome.wustl.edu	37	chr22	46762904	46762904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcctaccgtcagcagggtggCcctggtggtggcggagtcct	16	12	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	46762904	46762904	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.8191	p.A2731T	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	20	0	0	7	10	58.82	-	-	-	T	46762904	C	T	46762904	3	4	708	1	0	0	0	0	1	0	0	0	3250	739	26	4	881	4	CELSR1	22	46762904	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	93028	46762904	4541662	838	62128										
MAPK8IP2	0	genome.wustl.edu	37	chr22	51043991	51043991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	acctctcccccaacggcaggTtcatcccgcggcatccagac	8	19	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	22	51043991	51043991	T	C	SNP	MAPK8IP2	ENST00000329492	human	ensembl	69_37n	1	known	missense	c.1840	p.F614L	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTyr_interaction_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735	33	0	0	7	7	46.67	-	-	-	C	51043991	T	C	51043991	3	2	708	1	0	0	0	0	1	0	0	0	9356	1739	60	5	1958	5	MAPK8IP2	22	51043991	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	4281087	51043991	260575	839	62129										
CSF2RA	0	genome.wustl.edu	37	chrX	1428338	1428338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaggaagggaaaggctaccGcgaagaggtcttgaccgtga	16	7	1	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	1428338	1428338	G	A	SNP	CSF2RA	ENST00000417535	human	ensembl	69_37n	1	known	missense	c.1271	p.R424H	0.000	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223	125	0	0	123	49	28.49	-	-	-	A	1428338	G	A	1428338	3	1	708	1	0	0	0	0	1	0	0	0	3966	1087	38	1	1429	1	CSF2RA	23	1428338	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09		1428338	153842222	840	62130										
ARSE	0	genome.wustl.edu	37	chrX	2852962	2852962	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tctccagatgttgcccagccTgtccagctgcagaggaactg	11	13	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	2852962	2852962	T	C	SNP	ARSE	ENST00000545496	human	ensembl	69_37n	-1	known	missense	c.1756	p.R586G	0.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	91	0	0	97	26	21.14	-	-	-	C	2852962	T	C	2852962	3	2	708	1	0	0	0	0	1	0	0	0	994	1579	55	5	92	5	ARSE	23	2852962	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1424624	2852962	152417598	841	62131										
TLR8	0	genome.wustl.edu	37	chrX	12937583	12937583	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accagttaccccaaatacccTctggtttgccagagtctttg	7	13	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	12937583	12937583	T	G	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.424	p.S142A	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	64	0	0	57	20	25.97	-	-	-	G	12937583	T	G	12937583	3	3	708	1	0	0	0	0	1	0	0	0	16052	1551	54	5	430	5	TLR8	23	12937583	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	10084621	12937583	142332977	842	62132										
EGFL6	0	genome.wustl.edu	37	chrX	13626502	13626502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	accatgccaattgcttcaatAcccaagggtccttcaagtgt	7	12	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	13626502	13626502	A	G	SNP	EGFL6	ENST00000380602	human	ensembl	69_37n	1	known	missense	c.715	p.T239A	1.000	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759	114	0	0	141	48	25.4	-	-	-	G	13626502	A	G	13626502	3	3	708	1	0	0	0	0	1	0	0	0	4998	391	14	5	741	5	EGFL6	23	13626502	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	688919	13626502	141644058	843	62133										
GEMIN8	0	genome.wustl.edu	37	chrX	14027287	14027287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcatccagctgctgctgccgCcctgagaacaaacacgaacg	10	15	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	14027287	14027287	C	T	SNP	GEMIN8	ENST00000380523	human	ensembl	69_37n	-1	known	silent	c.474	p.R158	0.998	NULL	NULL	-	no_errors	GEMIN8	HGNC	ENSG00000046647	36	0	0	32	7	17.95	-	-	-	T	14027287	C	T	14027287	2	4	708	1	0	0	0	0	0	0	0	1	6386	753	26	4		4	GEMIN8	23	14027287	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	400785	14027287	141243273	844	62134										
TXLNG	0	genome.wustl.edu	37	chrX	16847877	16847877	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaagaagctcatcgaacagtAcgcactgagggaagaggtaa	12	7	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	16847877	16847877	A	G	SNP	TXLNG	ENST00000380122	human	ensembl	69_37n	1	known	missense	c.848	p.Y283C	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNG	HGNC	ENSG00000086712	68	0	0	90	32	26.23	-	-	-	G	16847877	A	G	16847877	3	3	708	1	0	0	0	0	1	0	0	0	16886	391	14	5	866	5	TXLNG	23	16847877	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2820590	16847877	138422683	845	62135										
NHS	0	genome.wustl.edu	37	chrX	17750097	17750097	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catcacttcacccagcagtaAtgtgacaacccccaacagcc	5	17	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	17750097	17750097	A	G	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.4406	p.N1469S	0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	67	0	0	95	34	26.36	-	-	-	G	17750097	A	G	17750097	3	3	708	1	0	0	0	0	1	0	0	0	10483	101	4	5	4541	5	NHS	23	17750097	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	902220	17750097	137520463	846	62136										
BEND2	0	genome.wustl.edu	37	chrX	18192346	18192346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gcagatgccgatgcaacacgGttggtacgttttttattttt	10	7	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	18192346	18192346	G	A	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	silent	c.1785	p.N595	0.001	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	101	0	0	98	45	31.25	-	-	-	A	18192346	G	A	18192346	2	1	708	1	0	0	0	0	0	0	0	1	1402	1252	44	4		4	BEND2	23	18192346	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	442249	18192346	137078214	847	62137										
BEND2	0	genome.wustl.edu	37	chrX	18221772	18221772	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ataggtactgctgtagtagcAttggcaaatgagatgacagc	12	6	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	18221772	18221772	A	G	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	silent	c.756	p.N252	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	103	1	0.96	135	42	23.73	-	-	-	G	18221772	A	G	18221772	2	3	708	1	0	0	0	0	0	0	0	1	1402	214	8	5		5	BEND2	23	18221772	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	29426	18221772	137048788	848	62138										
PPEF1	0	genome.wustl.edu	37	chrX	18807363	18807363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacaaatggatctcctactgAacacttaacagagcatgaat	6	9	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	18807363	18807363	A	G	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1037	p.E346G	0.052	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	55	0	0	67	16	19.28	-	-	-	G	18807363	A	G	18807363	3	3	708	1	0	0	0	0	1	0	0	0	12380	246	9	5	1075	5	PPEF1	23	18807363	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	585591	18807363	136463197	849	62139										
EIF2S3	0	genome.wustl.edu	37	chrX	24089733	24089733	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gacagaatggtggggcaagtActtggtgcagtcggagcttt	16	6	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	24089733	24089733	A	T	SNP	EIF2S3	ENST00000253039	human	ensembl	69_37n	1	known	silent	c.1071	p.V357	0.276	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EIF2S3	HGNC	ENSG00000130741	48	0	0	75	12	13.79	-	-	-	T	24089733	A	T	24089733	2	4	708	1	0	0	0	0	0	0	0	1	5046	378	14	5		5	EIF2S3	23	24089733	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	5282370	24089733	131180827	850	62140										
DMD	0	genome.wustl.edu	37	chrX	31341728	31341728	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aacttacttgatatagtaggGcactttgtttggcgagatgg	12	5	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	31341728	31341728	G	C	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9211	p.P3071A	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pirsf_Dystrophin/utrophin,pfscan_WW_Rsp5_WWP	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	103	0	0	117	25	17.61	-	-	-	C	31341728	G	C	31341728	3	2	708	1	0	0	0	0	1	0	0	0	4616	1203	42	4	2032	4	DMD	23	31341728	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	7251995	31341728	123928832	851	62141										
FAM47B	0	genome.wustl.edu	37	chrX	34962381	34962381	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctaggagttaatgaagaatCcatcagcagtctgtttgact	9	8	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	34962381	34962381	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1433	p.S478Y	0.003	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	93	0	0	148	32	17.68	-	-	-	A	34962381	C	A	34962381	3	1	708	1	0	0	0	0	1	0	0	0	5616	855	30	2	1435	2	FAM47B	23	34962381	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	3620653	34962381	120308179	852	62142										
CXorf22	0	genome.wustl.edu	37	chrX	35984797	35984797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atctttgtcggtaaaatcttTccatcacgtatatttagctt	5	8	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	35984797	35984797	T	C	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	missense	c.1526	p.F509S	0.951	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	114	0	0	146	48	24.74	-	-	-	C	35984797	T	C	35984797	3	2	708	1	0	0	0	0	1	0	0	0	4133	1783	62	5	1560	5	CXorf22	23	35984797	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1022416	35984797	119285763	853	62143										
SYN1	0	genome.wustl.edu	37	chrX	47432291	47432291	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agaagaggctggcgaaagacTtcctcaggctgcggatggtc	15	9	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	47432291	47432291	T	A	SNP	SYN1	ENST00000295987	human	ensembl	69_37n	-1	known	missense	c.2090	p.K697M	1.000	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056	119	0	0	105	25	19.23	-	-	-	A	47432291	T	A	47432291	3	1	708	1	0	0	0	0	1	0	0	0	15532	1609	56	5	31	5	SYN1	23	47432291	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	11447494	47432291	107838269	854	62144										
ELK1	0	genome.wustl.edu	37	chrX	47496235	47496235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gtggtggtagtagtcatggcTtctggggccctggggagagc	19	7	2	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	47496235	47496235	T	C	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	missense	c.1280	p.K427R	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	42	0	0	40	6	13.04	-	-	-	C	47496235	T	C	47496235	3	2	708	1	0	0	0	0	1	0	0	0	5096	1609	56	5	10	5	ELK1	23	47496235	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	63944	47496235	107774325	855	62145										
DGKK	0	genome.wustl.edu	37	chrX	50135430	50135430	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaatgcgaaagcgagcaaagTtcttgaacatagacagcctg	11	8	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	50135430	50135430	T	C	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	49	0	0	61	14	18.67	-	-	-	C	50135430	T	C	50135430	1	2	708	0	1	0	0	0	0	0	0	0	4508	1725	60	5		5	DGKK	23	50135430	RNA	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2639195	50135430	105135130	856	62146										
GPR173	0	genome.wustl.edu	37	chrX	53106578	53106578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggcccatgccaccaaccctgCtgggtatccggcagaatggg	13	14	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	53106578	53106578	C	T	SNP	GPR173	ENST00000332582	human	ensembl	69_37n	1	known	silent	c.775	p.L259	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194	30	0	0	44	12	21.43	-	-	-	T	53106578	C	T	53106578	2	4	708	1	0	0	0	0	0	0	0	1	6721	796	28	4		4	GPR173	23	53106578	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	2971148	53106578	102163982	857	62147										
HUWE1	0	genome.wustl.edu	37	chrX	53655570	53655570	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gggtatggatccatggaaggAtctacaagggaggtggggag	19	4	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	53655570	53655570	A	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	silent	c.1116	p.D372	1.000	superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	77	0	0	116	24	17.14	-	-	-	G	53655570	A	G	53655570	2	3	708	1	0	0	0	0	0	0	0	1	7515	347	12	5		5	HUWE1	23	53655570	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	548992	53655570	101614990	858	62148										
ARHGEF9	0	genome.wustl.edu	37	chrX	62944456	62944456	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tccctcctcatcgtcgatctGgccccaccaccaatccttgt	5	19	2	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	62944456	62944456	G	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.145	p.Q49K	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	79	0	0	114	29	20.28	-	-	-	T	62944456	G	T	62944456	3	4	708	1	0	0	0	0	1	0	0	0	914	1357	47	4	1441	4	ARHGEF9	23	62944456	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	9288886	62944456	92326104	859	62149										
FAM155B	0	genome.wustl.edu	37	chrX	68725672	68725672	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cggccgagttcccctccgccAaaaaaaacttgctcaaaggc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	68725672	68725672	A	-	DEL	FAM155B	ENST00000252338	human	ensembl	69_37n	1	known	frame_shift_del	c.547	p.N185fs	0.996	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054	37	0	0	31	14	29.79	-	-	-	-	68725672	A	-	68725672	7	5	708	1	0	1	0	1	0	0	0	0	5506	131	5	0	549	0	FAM155B	23	68725672	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	5781216	68725672	86544888	860	62150										
AWAT2	0	genome.wustl.edu	37	chrX	69269746	69269746	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaaaacagcaaagacatccaGggcagtcttgaggtccttct	10	10	2	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	69269746	69269746	G	A	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	silent	c.37	p.L13	0.123	NULL	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	96	0	0	97	22	18.49	-	-	-	A	69269746	G	A	69269746	2	1	708	1	0	0	0	0	0	0	0	1	1239	991	35	4		4	AWAT2	23	69269746	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	544074	69269746	86000814	861	62151										
GDPD2	0	genome.wustl.edu	37	chrX	69650967	69650967	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttataagcatgagctatctcAcctagctatgtaagtattta	6	7	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	69650967	69650967	A	G	SNP	GDPD2	ENST00000453994	human	ensembl	69_37n	1	known	missense	c.1451	p.H484R	0.003	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	90	0	0	88	22	20	-	-	-	G	69650967	A	G	69650967	3	3	708	1	0	0	0	0	1	0	0	0	6376	159	6	5	1497	5	GDPD2	23	69650967	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	381221	69650967	85619593	862	62152										
IL2RG	0	genome.wustl.edu	37	chrX	70328515	70328515	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tggagccaacagagataaccAcggcttccaatgcaaacagg	10	11	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	70328515	70328515	A	G	SNP	IL2RG	ENST00000374202	human	ensembl	69_37n	-1	known	missense	c.788	p.V263A	0.947	NULL	pfam_IL6_recept-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168	75	0	0	87	24	21.62	-	-	-	G	70328515	A	G	70328515	3	3	708	1	0	0	0	0	1	0	0	0	7742	159	6	5	333	5	IL2RG	23	70328515	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	677548	70328515	84942045	863	62153										
PHKA1	0	genome.wustl.edu	37	chrX	71800923	71800923	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggctgccttggagaggtaggTcatggtgccaaacctgccac	14	11	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	71800923	71800923	T	G	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.3652	p.T1218P	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	102	0	0	64	26	28.89	-	-	-	G	71800923	T	G	71800923	3	3	708	1	0	0	0	0	1	0	0	0	11917	1667	58	5	74	5	PHKA1	23	71800923	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1472408	71800923	83469637	864	62154										
RLIM	0	genome.wustl.edu	37	chrX	73814166	73814166	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttttcatctgagttttgcggTggtgggccttctttaatttg	11	6	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	73814166	73814166	T	C	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	silent	c.228	p.P76	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	176	0	0	243	54	18.18	-	-	-	C	73814166	T	C	73814166	2	2	708	1	0	0	0	0	0	0	0	1	13476	1683	59	5		5	RLIM	23	73814166	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	2013243	73814166	81456394	865	62155										
ZDHHC15	0	genome.wustl.edu	37	chrX	74644504	74644504	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tacctaaggtggttttgtttCtgctgacaagccaacaatgg	10	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	74644504	74644504	C	T	SNP	ZDHHC15	ENST00000373367	human	ensembl	69_37n	-1	known	missense	c.719	p.R240K	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383	112	0	0	96	24	20	-	-	-	T	74644504	C	T	74644504	3	4	708	1	0	0	0	0	1	0	0	0	17701	913	32	2	310	2	ZDHHC15	23	74644504	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	830338	74644504	80626056	866	62156										
BRWD3	0	genome.wustl.edu	37	chrX	79939568	79939568	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	gaatatttggcgaacatcctTataaaattccagaggactac	7	8	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	79939568	79939568	T	C	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.4174	p.K1392E	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	97	0	0	127	36	22.09	-	-	-	C	79939568	T	C	79939568	3	2	708	1	0	0	0	0	1	0	0	0	1534	1763	61	5	1254	5	BRWD3	23	79939568	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	5295064	79939568	75330992	867	62157										
CYLC1	0	genome.wustl.edu	37	chrX	83128683	83128683	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgtcaagaaagatgacaagAaaaaggatgtaaagaaggac							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	83128683	83128683	A	-	DEL	CYLC1	ENST00000329312	human	ensembl	69_37n	1	known	frame_shift_del	c.967	p.K324fs	0.011	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035	41	0	0	38	14	26.42	-	-	-	-	83128683	A	-	83128683	7	5	708	1	0	1	0	1	0	0	0	0	4172	247	9	0	981	0	CYLC1	23	83128683	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	3189115	83128683	72141877	868	62158										
KLHL4	0	genome.wustl.edu	37	chrX	86888818	86888818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atggagctatctaaatactgTagaaagatgggaccctgagg	12	6	1	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	86888818	86888818	T	C	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.1619	p.V540A	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	85	0	0	117	21	15.11	-	-	-	C	86888818	T	C	86888818	3	2	708	1	0	0	0	0	1	0	0	0	8444	1638	57	5	1649	5	KLHL4	23	86888818	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	3760135	86888818	68381742	869	62159										
RPA4	0	genome.wustl.edu	37	chrX	96139824	96139824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	catgatgctggataaagcccGtcgtgataccactgtagaaa	10	9	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	96139824	96139824	G	A	SNP	RPA4	ENST00000373040	human	ensembl	69_37n	1	known	missense	c.515	p.R172H	0.000	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	70	0	0	93	18	16.07	-	-	-	A	96139824	G	A	96139824	3	1	708	1	0	0	0	0	1	0	0	0	13625	1145	40	1	517	1	RPA4	23	96139824	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	9251006	96139824	59130736	870	62160										
GLA	0	genome.wustl.edu	37	chrX	100652887	100652887	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	atgtgacttcttaaccttgaAgtccattcatagaaccctag	6	10	2	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	100652887	100652887	A	G	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	silent	c.1200	p.T400	0.001	NULL	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	64	0	0	59	32	35.16	-	-	-	G	100652887	A	G	100652887	2	3	708	1	0	0	0	0	0	0	0	1	6478	59	3	5		5	GLA	23	100652887	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	4513063	100652887	54617673	871	62161										
BEX2	0	genome.wustl.edu	37	chrX	102564877	102564877	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	attttccacgatgagattgtTtaacgctcgttcctctttgg	8	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	102564877	102564877	T	G	SNP	BEX2	ENST00000536889	human	ensembl	69_37n	-1	known	missense	c.124	p.N42H	0.000	NULL	pfam_TF_A-like/BEX-like	-	no_errors	BEX2	HGNC	ENSG00000133134	50	0	0	63	7	10	-	-	-	G	102564877	T	G	102564877	3	3	708	1	0	0	0	0	1	0	0	0	1416	1841	64	5	362	5	BEX2	23	102564877	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1911990	102564877	52705683	872	62162										
NGFRAP1	0	genome.wustl.edu	37	chrX	102632568	102632568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgcccctaattttcgatgggCcatacccaataggcagatca	8	12	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	102632568	102632568	C	T	SNP	NGFRAP1	ENST00000299872	human	ensembl	69_37n	1	known	missense	c.149	p.A50V	0.998	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	NGFRAP1	HGNC	ENSG00000166681	85	0	0	94	28	22.22	-	-	-	T	102632568	C	T	102632568	3	4	708	1	0	0	0	0	1	0	0	0	10469	739	26	4	151	4	NGFRAP1	23	102632568	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	67691	102632568	52637992	873	62163										
NRK	0	genome.wustl.edu	37	chrX	105150446	105150446	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttcatggaaaagtgtacgatAaaaaatttcctgtttcgtcc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	105150446	105150446	A	-	DEL	NRK	ENST00000428173	human	ensembl	69_37n	1	known	frame_shift_del	c.885	p.N297fs	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	60	0	0	88	27	23.08	-	-	-	-	105150446	A	-	105150446	7	5	708	1	0	1	0	1	0	0	0	0	10728	352	13	0	927	0	NRK	23	105150446	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	2517878	105150446	50120114	874	62164										
RNF128	0	genome.wustl.edu	37	chrX	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aaccaggagaataggtccagTtttttttggctccttgtaat							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	105937256	105937256	T	-	DEL	RNF128	ENST00000324342	human	ensembl	69_37n	1	known	frame_shift_del	c.24	p.W11fs	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	68	0	0	119	14	10.45	-	-	-	-	105937256	T	-	105937256	7	5	708	1	0	1	0	1	0	0	0	0	13522	1722	60	0	26	0	RNF128	23	105937256	Frame_Shift_Del	DEL	T	TCGA-D8-A1XK-01A-21D-A14K-09	786810	105937256	49333304	875	62165										
IRS4	0	genome.wustl.edu	37	chrX	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tcccacttcctgagcctttgINSccccccccagagttcttgcc							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	150	0	0	160	50	23.81	-	-	-	C	107977803	-	C	107977802	7	5	708	1	0	1	1	0	0	0	0	0	7896	1306	46	0	2004	0	IRS4	23	107977802	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	2040546	107977802	47292758	876	62166										
KLHL13	0	genome.wustl.edu	37	chrX	117053569	117053569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccagcgtgtcttgaaggttgTccatattaagagaaagcttt	10	7	1	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	117053569	117053569	T	C	SNP	KLHL13	ENST00000539496	human	ensembl	69_37n	-1	known	missense	c.494	p.D165G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096	53	0	0	58	22	27.5	-	-	-	C	117053569	T	C	117053569	3	2	708	1	0	0	0	0	1	0	0	0	8422	1667	58	5	1498	5	KLHL13	23	117053569	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	9075767	117053569	38216991	877	62167										
UPF3B	0	genome.wustl.edu	37	chrX	118971805	118971805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttgattctgtactttcagccTtctttcctttatcccgaagt	5	11	3	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	118971805	118971805	T	G	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	missense	c.1217	p.K406T	0.924	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	272	0	0	320	74	18.78	-	-	-	G	118971805	T	G	118971805	3	3	708	1	0	0	0	0	1	0	0	0	17103	1609	56	5	242	5	UPF3B	23	118971805	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	1918236	118971805	36298755	878	62168										
ZBTB33	0	genome.wustl.edu	37	chrX	119388224	119388224	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aatcagcagacaccaaacagTgctattttaacaggaaacaa	6	9	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	119388224	119388224	T	C	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	1	known	silent	c.954	p.S318	0.925	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	51	0	0	64	31	32.63	-	-	-	C	119388224	T	C	119388224	2	2	708	1	0	0	0	0	0	0	0	1	17632	1693	59	5		5	ZBTB33	23	119388224	Silent	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	416419	119388224	35882336	879	62169										
FAM70A	0	genome.wustl.edu	37	chrX	119425191	119425191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tgataaacacgatagaagccAccagctgtaggggggaataa	12	7	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	119425191	119425191	A	G	SNP	FAM70A	ENST00000309720	human	ensembl	69_37n	-1	known	missense	c.269	p.V90A	1.000	NULL	NULL	-	no_errors	FAM70A	HGNC	ENSG00000125355	70	0	0	80	20	19.8	-	-	-	G	119425191	A	G	119425191	3	3	708	1	0	0	0	0	1	0	0	0	5650	159	6	5	808	5	FAM70A	23	119425191	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	36967	119425191	35845369	880	62170										
THOC2	0	genome.wustl.edu	37	chrX	122765548	122765548	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cttgtacttaccgaaatatgAtgggcatacattggcctaga	9	8	0	2			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	122765548	122765548	A	G	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	silent	c.2472	p.H824	0.997	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	83	0	0	84	43	33.86	-	-	-	G	122765548	A	G	122765548	2	3	708	1	0	0	0	0	0	0	0	1	15960	330	12	5		5	THOC2	23	122765548	Silent	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	3340357	122765548	32505012	881	62171										
USP26	0	genome.wustl.edu	37	chrX	132160788	132160788	+	Frame_Shift_Del	DEL	A	A	-													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	tactcaagctcttctgctccAaaaaaaagatcaaaagtaga							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	132160788	132160788	A	-	DEL	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	frame_shift_del	c.1461	p.F487fs	0.033	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	21	0	0	36	11	23.4	-	-	-	-	132160788	A	-	132160788	7	5	708	1	0	1	0	1	0	0	0	0	17154	127	5	0	1283	0	USP26	23	132160788	Frame_Shift_Del	DEL	A	TCGA-D8-A1XK-01A-21D-A14K-09	9395240	132160788	23109772	882	62172										
SAGE1	0	genome.wustl.edu	37	chrX	134991926	134991926	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ctggtattccggccatgagtAccagggatcagtgtatgttt	12	8	1	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	134991926	134991926	A	G	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.1711	p.T571A	0.007	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	60	0	0	89	12	11.88	-	-	-	G	134991926	A	G	134991926	3	3	708	1	0	0	0	0	1	0	0	0	13895	391	14	5	1761	5	SAGE1	23	134991926	Missense_Mutation	SNP	A	TCGA-D8-A1XK-01A-21D-A14K-09	2831138	134991926	20278634	883	62173										
GPR112	0	genome.wustl.edu	37	chrX	135480086	135480086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	agtgaatgaacagatattagCgcttataacatacaccggat	8	7	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	135480086	135480086	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.8231	p.A2744V	0.081	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	112	0	0	151	31	17.03	-	-	-	T	135480086	C	T	135480086	3	4	708	1	0	0	0	0	1	0	0	0	6679	768	27	1	8297	1	GPR112	23	135480086	Missense_Mutation	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	488160	135480086	19790474	884	62174										
MAGEA8	0	genome.wustl.edu	37	chrX	149013887	149013888	+	Frame_Shift_Ins	INS	-	-	T													0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cctgtggggtccaagggcccINSttgctgaaaccagctatgtg							TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	149013887	149013888	-	T	INS	MAGEA8	ENST00000286482	human	ensembl	69_37n	1	known	frame_shift_ins	c.841_842	p.A282fs	0.020:0.020	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	46	0	0	59	20	25.32	-	-	-	T	149013888	-	T	149013887	7	5	708	1	0	1	1	0	0	0	0	0	9240	681	24	0	843	0	MAGEA8	23	149013887	Frame_Shift_Ins	INS	-	TCGA-D8-A1XK-01A-21D-A14K-09	13533801	149013887	6256673	885	62175										
ZNF185	0	genome.wustl.edu	37	chrX	152083321	152083321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cagatgaaagtgcgaaccacGctgaagggggacaagagctg	15	8	0	4			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	152083321	152083321	G	A	SNP	ZNF185	ENST00000535861	human	ensembl	69_37n	1	known	silent	c.102	p.T34	0.842	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394	32	0	0	44	29	39.73	-	-	-	A	152083321	G	A	152083321	2	1	708	1	0	0	0	0	0	0	0	1	17848	1074	38	1		1	ZNF185	23	152083321	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	3069434	152083321	3187239	886	62176										
BGN	0	genome.wustl.edu	37	chrX	152773843	152773843	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ccctactgggaggtgcagccGgccactttccgctgcgtcac	12	16	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	152773843	152773843	G	A	SNP	BGN	ENST00000331595	human	ensembl	69_37n	1	known	silent	c.1047	p.P349	0.018	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492	46	0	0	41	14	25.45	-	-	-	A	152773843	G	A	152773843	2	1	708	1	0	0	0	0	0	0	0	1	1423	1103	39	1		1	BGN	23	152773843	Silent	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	690522	152773843	2496717	887	62177										
SRPK3	0	genome.wustl.edu	37	chrX	153047249	153047249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	aagagtgcggggcattacacGgagacagctgtggatgagat	16	6	0	3			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	153047249	153047249	G	A	SNP	SRPK3	ENST00000430541	human	ensembl	69_37n	1	putative	missense	c.392	p.R131Q	0.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRPK3	HGNC	ENSG00000184343	76	0	0	63	23	26.74	-	-	-	A	153047249	G	A	153047249	3	1	708	1	0	0	0	0	1	0	0	0	15252	1103	39	1	365	1	SRPK3	23	153047249	Missense_Mutation	SNP	G	TCGA-D8-A1XK-01A-21D-A14K-09	273406	153047249	2223311	888	62178										
ATP6AP1	0	genome.wustl.edu	37	chrX	153664078	153664078	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ttctcctacgccagcgactgTgccagcttcttctcccccgg	8	18	3	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	153664078	153664078	T	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	69_37n	1	known	nonsense	c.1254	p.C418*	0.996	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	121	1	0.81	139	18	11.32	-	-	-	A	153664078	T	A	153664078	4	1	708	1	0	0	0	0	0	1	0	0	1169	1702	59	5	1292	5	ATP6AP1	23	153664078	Nonsense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	616829	153664078	1606482	889	62179										
PLXNA3	0	genome.wustl.edu	37	chrX	153691781	153691781	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	cacctgtatgagacagtcccCgtggtggatggcagccccat	12	13	0	1			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	153691781	153691781	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.1365	p.P455	0.023	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	66	0	0	71	13	15.48	-	-	-	T	153691781	C	T	153691781	2	4	708	1	0	0	0	0	0	0	0	1	12195	639	23	1		1	PLXNA3	23	153691781	Silent	SNP	C	TCGA-D8-A1XK-01A-21D-A14K-09	27703	153691781	1578779	890	62180										
F8	0	genome.wustl.edu	37	chrX	154132573	154132573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0123456790123457	11	1	0.459975107765163	1.40501487462813	0.254531680186256	1	1	0	ggatgtggaatatattaccaTggaagcgataattctcttta	9	5	1	0			TCGA-D8-A1XK-01A-21D-A14K-09	TCGA-D8-A1XK-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b704b7c-56d2-4816-8c47-055a794afb69	9f5b3aca-b473-43e0-9dc5-6339152822a5	X	154132573	154132573	T	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5813	p.H1938R	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	100	0	0	131	59	31.05	-	-	-	C	154132573	T	C	154132573	3	2	708	1	0	0	0	0	1	0	0	0	5387	1464	51	5	1310	5	F8	23	154132573	Missense_Mutation	SNP	T	TCGA-D8-A1XK-01A-21D-A14K-09	440792	154132573	1137987	891	62181										
TTC39A	0	genome.wustl.edu	37	chr1	51761833	51761833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtaggcggccttcatgtaaaTgtaggtggcctgtgcgagac	15	8	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	51761833	51761833	T	C	SNP	TTC39A	ENST00000447632	human	ensembl	69_37n	-1	known	missense	c.1171	p.I391V	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	31	0	0	33	9	21.43	-	-	-	C	51761833	T	C	51761833	3	2	709	1	0	0	0	0	1	0	0	0	16804	1464	51	5	694	5	TTC39A	1	51761833	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09		51761833	197488788	1	62182										
DAB1	0	genome.wustl.edu	37	chr1	57491653	57491654	+	Frame_Shift_Ins	INS	-	-	G													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	agagagcaatgcatacttacINSggggggagaggttatatcag							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	57491653	57491654	-	G	INS	DAB1	ENST00000371231	human	ensembl	69_37n	-1	known	frame_shift_ins	c.886_885	p.T295fs	0.996:0.070	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB1	HGNC	ENSG00000173406	51	0	0	35	10	22.22	-	-	-	G	57491654	-	G	57491653	7	5	709	1	0	1	1	0	0	0	0	0	4249	550	19	0	900	0	DAB1	1	57491653	Frame_Shift_Ins	INS	-	TCGA-D8-A1XL-01A-11D-A14K-09	5729820	57491653	191758968	2	62183										
CDC14A	0	genome.wustl.edu	37	chr1	100961587	100961587	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tacaaaaggacatccaagagCagtgtcccagcctttcaggt	9	11	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	100961587	100961587	C	A	SNP	CDC14A	ENST00000361544	human	ensembl	69_37n	1	known	missense	c.1280	p.A427E	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335	128	0	0	79	36	31.3	-	-	-	A	100961587	C	A	100961587	3	1	709	1	0	0	0	0	1	0	0	0	3085	710	25	4	1345	4	CDC14A	1	100961587	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	43469934	100961587	148289034	3	62184										
FLG	0	genome.wustl.edu	37	chr1	152275600	152275600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gttccttagcggtactagagTctgactgtacaggtgaagac	12	8	1	4			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	152275600	152275600	T	C	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.11762	p.D3921G	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	134	0	0	139	23	14.2	-	-	-	C	152275600	T	C	152275600	3	2	709	1	0	0	0	0	1	0	0	0	5968	1667	58	5	427	5	FLG	1	152275600	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	51314013	152275600	96975021	4	62185										
KCNN3	0	genome.wustl.edu	37	chr1	154841911	154841911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ccccaccgctatacttgcagGagctcatggcgatctccgtg	10	15	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	154841911	154841911	G	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.530	p.S177Y	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	25	0	0	72	12	14.29	-	-	-	T	154841911	G	T	154841911	3	4	709	1	0	0	0	0	1	0	0	0	8134	1174	41	2	1719	2	KCNN3	1	154841911	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	2566311	154841911	94408710	5	62186										
LAMC1	0	genome.wustl.edu	37	chr1	182993128	182993128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ccaagtcctgtcacctgtgcGacgccgggcagccccacctg	11	18	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	182993128	182993128	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.277	p.D93N	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	8	0	0	15	21	58.33	-	-	-	A	182993128	G	A	182993128	3	1	709	1	0	0	0	0	1	0	0	0	8668	1058	37	1	279	1	LAMC1	1	182993128	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	28151217	182993128	66257493	6	62187										
HMCN1	0	genome.wustl.edu	37	chr1	186122990	186122990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	catacacatggaaccacaccGttttctatgatcaggcacag	7	12	2	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	186122990	186122990	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.15127	p.V5043I	0.223	pfam_G2_nidogen/fibulin_G2F,superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	104	0	0	80	20	20	-	-	-	A	186122990	G	A	186122990	3	1	709	1	0	0	0	0	1	0	0	0	7271	1145	40	1	15513	1	HMCN1	1	186122990	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	3129862	186122990	63127631	7	62188										
FAM5C	0	genome.wustl.edu	37	chr1	190067803	190067803	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtaaagagagacccaaaatcAtatggaccagacttgacttg	9	8	1	4			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	190067803	190067803	A	T	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1646	p.M549K	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	61	0	0	81	16	16.49	-	-	-	T	190067803	A	T	190067803	3	4	709	1	0	0	0	0	1	0	0	0	5639	217	8	5	658	5	FAM5C	1	190067803	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	3944813	190067803	59182818	8	62189										
CDC42BPA	0	genome.wustl.edu	37	chr1	227288919	227288919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttctatgctgcatactcctgGtgagtaactaatttgttttt	7	7	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	227288919	227288919	G	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.2023	p.P675T	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	83	0	0	100	14	12.28	-	-	-	T	227288919	G	T	227288919	3	4	709	1	0	0	0	0	1	0	0	0	3101	1261	44	4	3224	4	CDC42BPA	1	227288919	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	37221116	227288919	21961702	9	62190										
TRIM67	0	genome.wustl.edu	37	chr1	231344976	231344976	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aaccgcagctggttcatgcaCtgcaactcccacaccaacag	7	16	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	1	231344976	231344976	C	A	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	missense	c.2103	p.H701Q	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	100	0	0	80	35	30.43	-	-	-	A	231344976	C	A	231344976	3	1	709	1	0	0	0	0	1	0	0	0	16636	564	20	4	2133	4	TRIM67	1	231344976	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	4056057	231344976	17905645	10	62191										
EPT1	0	genome.wustl.edu	37	chr2	26587746	26587746	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tctgataactttttctggctTtctgctggtcgtattcaatt	7	8	4	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	2	26587746	26587746	T	C	SNP	EPT1	ENST00000442141	human	ensembl	69_37n	1	known	missense	c.77	p.F26S	1.000	pfam_CDP-OH_P_trans	pfam_CDP-OH_P_trans	-	no_stop_codon	EPT1	HGNC	ENSG00000138018	126	0	0	204	37	15.35	-	-	-	C	26587746	T	C	26587746	3	2	709	1	0	0	0	0	1	0	0	0	5236	1841	64	5	183	5	EPT1	2	26587746	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09		26587746	216611627	11	62192										
C2orf71	0	genome.wustl.edu	37	chr2	29294367	29294367	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgggctgctcaggtccagggCtggcttcctgggctggcagc	17	12	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	2	29294367	29294367	C	A	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.2761	p.A921S	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	12	0	0	28	7	20	-	-	-	A	29294367	C	A	29294367	3	1	709	1	0	0	0	0	1	0	0	0	2211	797	28	4	1113	4	C2orf71	2	29294367	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	2706621	29294367	213905006	12	62193										
NEUROD1	0	genome.wustl.edu	37	chr2	182542979	182542979	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gccgtcggcaggtgggggggCatgtcctggttctgctcagg	19	10	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	2	182542979	182542979	C	A	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	missense	c.609	p.M203I	1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	25	0	0	21	12	36.36	-	-	-	A	182542979	C	A	182542979	3	1	709	1	0	0	0	0	1	0	0	0	10420	710	25	4	465	4	NEUROD1	2	182542979	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	153248612	182542979	60656394	13	62194										
STAC	0	genome.wustl.edu	37	chr3	36485094	36485094	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tcaggaatacatcttcaagaAgcccactttctgtgatgtct	7	10	5	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	36485094	36485094	A	G	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	missense	c.350	p.K117R	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	29	0	0	31	8	20.51	-	-	-	G	36485094	A	G	36485094	3	3	709	1	0	0	0	0	1	0	0	0	15330	72	3	5	356	5	STAC	3	36485094	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09		36485094	161537336	14	62195										
COL7A1	0	genome.wustl.edu	37	chr3	48629805	48629805	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	actgaggacccgccatgtcaCacggtagccagtggcacctg	12	14	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	48629805	48629805	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.1072	p.V358L	0.595	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	10	0	0	13	5	27.78	-	-	-	A	48629805	C	A	48629805	3	1	709	1	0	0	0	0	1	0	0	0	3734	478	17	4	8206	4	COL7A1	3	48629805	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	12144711	48629805	149392625	15	62196										
ITIH1	0	genome.wustl.edu	37	chr3	52822303	52822303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cagaaagaggacaccctgtgCttcaacatcaatgaggagcc	10	11	2	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	52822303	52822303	C	T	SNP	ITIH1	ENST00000542827	human	ensembl	69_37n	1	known	missense	c.1924	p.L642F	1.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957	127	0	0	72	12	14.29	-	-	-	T	52822303	C	T	52822303	3	4	709	1	0	0	0	0	1	0	0	0	7957	805	28	4	2131	4	ITIH1	3	52822303	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	4192498	52822303	145200127	16	62197										
POPDC2	0	genome.wustl.edu	37	chr3	119378865	119378865	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	agtggccagagttaagacctGctcctcgcagcagtgaacaa	11	11	0	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	119378865	119378865	G	T	SNP	POPDC2	ENST00000341124	human	ensembl	69_37n	-1	known	missense	c.406	p.Q136K	1.000	pfam_Popeye_prot,superfamily_cNMP-bd-like	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577	82	0	0	82	24	22.64	-	-	-	T	119378865	G	T	119378865	3	4	709	1	0	0	0	0	1	0	0	0	12329	1328	46	4	704	4	POPDC2	3	119378865	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	66556562	119378865	78643565	17	62198										
POLQ	0	genome.wustl.edu	37	chr3	121217489	121217489	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aaaatcgataccaatcaataGtagtccaatcctcaaacata	3	10	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	121217489	121217489	G	C	SNP	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	missense	c.1988	p.T663S	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	100	0	0	84	19	18.45	-	-	-	C	121217489	G	C	121217489	3	2	709	1	0	0	0	0	1	0	0	0	12282	1029	36	4	5856	4	POLQ	3	121217489	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	1838624	121217489	76804941	18	62199										
IFT122	0	genome.wustl.edu	37	chr3	129195606	129195606	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgcctacagggatagcatgaCtgacgtcattgtgcagcacc	11	11	1	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	129195606	129195606	C	G	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	missense	c.1262	p.T421S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	51	0	0	73	9	10.98	-	-	-	G	129195606	C	G	129195606	3	3	709	1	0	0	0	0	1	0	0	0	7609	565	20	4	1308	4	IFT122	3	129195606	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	7978117	129195606	68826824	19	62200										
PIK3CA	0	genome.wustl.edu	37	chr3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctttgttttttaaggaacacTgtccattggcatggggaaat	10	6	0	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	3	178927980	178927980	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1258	p.C420R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0	11	79	87.78	-	-	-	C	178927980	T	C	178927980	3	2	709	1	0	0	0	0	1	0	0	0	11987	1580	55	5	1284	5	PIK3CA	3	178927980	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	49732374	178927980	19094450	20	62201										
LNX1	0	genome.wustl.edu	37	chr4	54362419	54362419	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gaaagctgtcatctcggggtCtgtaggcatccggggcctgt	15	10	3	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	4	54362419	54362419	C	G	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.1121	p.R374T	0.080	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	82	0	0	47	14	22.95	-	-	-	G	54362419	C	G	54362419	3	3	709	1	0	0	0	0	1	0	0	0	8921	913	32	2	1089	2	LNX1	4	54362419	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09		54362419	136791857	21	62202										
AGXT2L1	0	genome.wustl.edu	37	chr4	109672126	109672126	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gaagtagcctgctggaggaaTtatttgtccgccacaactct	10	10	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	4	109672126	109672126	T	A	SNP	AGXT2L1	ENST00000296486	human	ensembl	69_37n	-1	known	missense	c.667	p.I223F	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L1	HGNC	ENSG00000164089	53	0	0	43	12	21.82	-	-	-	A	109672126	T	A	109672126	3	1	709	1	0	0	0	0	1	0	0	0	406	1493	52	5	860	5	AGXT2L1	4	109672126	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	55309707	109672126	81482150	22	62203										
PRDM5	0	genome.wustl.edu	37	chr4	121739572	121739572	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cttgcacttaaattctttctCctctgtgggtttctggtgca	8	10	4	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	4	121739572	121739572	C	A	SNP	PRDM5	ENST00000264808	human	ensembl	69_37n	-1	known	nonsense	c.586	p.E196*	1.000	pirsf_Znf_PRDM5	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738	152	1	0.65	89	22	19.82	-	-	-	A	121739572	C	A	121739572	4	1	709	1	0	0	0	0	0	1	0	0	12541	864	30	2	1354	2	PRDM5	4	121739572	Nonsense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	12067446	121739572	69414704	23	62204										
ODZ3	0	genome.wustl.edu	37	chr4	183714346	183714346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgcgcgtctgacaccccttcGctatgacctgcgagacagaa	10	14	1	4			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	4	183714346	183714346	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.6521	p.R2174H	1.000	superfamily_Cyt_c_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	52	0	0	35	7	16.67	-	-	-	A	183714346	G	A	183714346	3	1	709	1	0	0	0	0	1	0	0	0	10909	1087	38	1	6619	1	ODZ3	4	183714346	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	61974774	183714346	7439930	24	62205										
NHLRC1	0	genome.wustl.edu	37	chr6	18122254	18122254	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	caaacactttgatggagcgaTcgccggcgtcagtgacaacc	11	12	1	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	18122254	18122254	T	G	SNP	NHLRC1	ENST00000340650	human	ensembl	69_37n	-1	known	missense	c.584	p.D195A	1.000	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566	56	0	0	72	8	10	-	-	-	G	18122254	T	G	18122254	3	3	709	1	0	0	0	0	1	0	0	0	10477	1435	50	5	607	5	NHLRC1	6	18122254	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09		18122254	152992813	25	62206										
SLC17A1	0	genome.wustl.edu	37	chr6	25801134	25801134	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttacctgcttaaggatcaatCcagtcaaagtggaagcaatt	8	8	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	25801134	25801134	C	G	SNP	SLC17A1	ENST00000244527	human	ensembl	69_37n	-1	known	missense	c.1253	p.G418A	0.512	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	-	no_errors	SLC17A1	HGNC	ENSG00000124568	60	0	0	62	15	19.48	-	-	-	G	25801134	C	G	25801134	3	3	709	1	0	0	0	0	1	0	0	0	14505	855	30	2	158	2	SLC17A1	6	25801134	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	7678880	25801134	145313933	26	62207										
OR2B2	0	genome.wustl.edu	37	chr6	27879388	27879388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gggagccacatgtcccaaatGcctttcgttgaccttcagca	9	13	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	27879388	27879388	G	A	SNP	OR2B2	ENST00000303324	human	ensembl	69_37n	-1	known	missense	c.710	p.A237V	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131	141	0	0	98	17	14.78	-	-	-	A	27879388	G	A	27879388	3	1	709	1	0	0	0	0	1	0	0	0	11062	1319	46	4	367	4	OR2B2	6	27879388	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	2078254	27879388	143235679	27	62208										
GNL1	0	genome.wustl.edu	37	chr6	30513924	30513924	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cctggagccgaggttggggtCtcctcatccccttctccctc	10	17	3	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	30513924	30513924	C	T	SNP	GNL1	ENST00000376621	human	ensembl	69_37n	-1	known	silent	c.1749	p.E583	1.000	NULL	pfam_GTP_binding_domain	-	no_errors	GNL1	HGNC	ENSG00000204590	62	0	0	92	23	20	-	-	-	T	30513924	C	T	30513924	2	4	709	1	0	0	0	0	0	0	0	1	6587	912	32	2		2	GNL1	6	30513924	Silent	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	2634536	30513924	140601143	28	62209										
UBR2	0	genome.wustl.edu	37	chr6	42585064	42585064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctatctgtccagttcttcacCgcacctactctggtgagtag	8	13	4	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	42585064	42585064	C	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	silent	c.1269	p.T423	0.980	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	106	0	0	74	19	20.43	-	-	-	T	42585064	C	T	42585064	2	4	709	1	0	0	0	0	0	0	0	1	16999	639	23	1		1	UBR2	6	42585064	Silent	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	12071140	42585064	128530003	29	62210										
AARS2	0	genome.wustl.edu	37	chr6	44274104	44274104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ggaggccaggaaggctgcctCgtcctctgacaccaggttgg	15	12	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	44274104	44274104	C	T	SNP	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	missense	c.1213	p.E405K	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-synth_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	67	0	0	63	8	11.27	-	-	-	T	44274104	C	T	44274104	3	4	709	1	0	0	0	0	1	0	0	0	20	893	31	1	1800	1	AARS2	6	44274104	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	1689040	44274104	126840963	30	62211										
BAI3	0	genome.wustl.edu	37	chr6	69348974	69348974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aatacgtcgagtatttccaaCtaatttcccaggattacaga	6	9	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	69348974	69348974	C	A	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.407	p.T136N	0.467	pfscan_CUB	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	26	0	0	41	6	12.5	-	-	-	A	69348974	C	A	69348974	3	1	709	1	0	0	0	0	1	0	0	0	1304	565	20	4	409	4	BAI3	6	69348974	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	25074870	69348974	101766093	31	62212										
MDN1	0	genome.wustl.edu	37	chr6	90390438	90390438	+	Frame_Shift_Del	DEL	A	A	-													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tccccttccaagccggaaggAgcagcgccctgacaccactc							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	6	90390438	90390438	A	-	DEL	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	frame_shift_del	c.12135	p.P4046fs	0.001	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	58	0	0	24	14	36.84	-	-	-	-	90390438	A	-	90390438	7	5	709	1	0	1	0	1	0	0	0	0	9486	291	11	0	4771	0	MDN1	6	90390438	Frame_Shift_Del	DEL	A	TCGA-D8-A1XL-01A-11D-A14K-09	21041464	90390438	80724629	32	62213										
ZNF716	0	genome.wustl.edu	37	chr7	57528859	57528859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctcttcaacccttactagacAtaaaagaattcatactggag	5	10	3	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	7	57528859	57528859	A	G	SNP	ZNF716	ENST00000420713	human	ensembl	69_37n	1	known	missense	c.692	p.H231R	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111	61	0	0	37	28	43.08	-	-	-	G	57528859	A	G	57528859	3	3	709	1	0	0	0	0	1	0	0	0	18215	217	8	5	706	5	ZNF716	7	57528859	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09		57528859	101609804	33	62214										
KIAA1324L	0	genome.wustl.edu	37	chr7	86537782	86537782	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cttataaaagaaatgcacatCtggtatttggcttgttggaa	9	5	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	7	86537782	86537782	C	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.2437	p.D813Y	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	188	0	0	121	40	24.84	-	-	-	A	86537782	C	A	86537782	3	1	709	1	0	0	0	0	1	0	0	0	8276	913	32	2	676	2	KIAA1324L	7	86537782	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	29008923	86537782	72600881	34	62215										
C7orf63	0	genome.wustl.edu	37	chr7	89939392	89939392	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gcctttttaggtgccctctgGtggagtagtaacagtggaaa	13	7	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	7	89939392	89939392	G	A	SNP	C7orf63	ENST00000412839	human	ensembl	69_37n	1	novel	nonsense	c.351	p.W117*	0.955	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C7orf63	HGNC	ENSG00000105792	106	0	0	82	13	13.68	-	-	-	A	89939392	G	A	89939392	4	1	709	1	0	0	0	0	0	1	0	0	2432	1261	44	4	2756	4	C7orf63	7	89939392	Nonsense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	3401610	89939392	69199271	35	62216										
COL14A1	0	genome.wustl.edu	37	chr8	121290407	121290407	+	Frame_Shift_Del	DEL	A	A	-													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aatttaaactaaatgcttacAaaaccaaagagactcttctt							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	8	121290407	121290407	A	-	DEL	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	frame_shift_del	c.3271	p.T1092fs	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	85	0	0	90	13	12.62	-	-	-	-	121290407	A	-	121290407	7	5	709	1	0	1	0	1	0	0	0	0	3701	131	5	0	3373	0	COL14A1	8	121290407	Frame_Shift_Del	DEL	A	TCGA-D8-A1XL-01A-11D-A14K-09		121290407	25073615	36	62217										
DENND3	0	genome.wustl.edu	37	chr8	142161849	142161849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cagcaccccttcgtgcccatCctgtcggaccagatgctgga	10	16	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	8	142161849	142161849	C	T	SNP	DENND3	ENST00000518668	human	ensembl	69_37n	1	novel	missense	c.916	p.P306S	0.980	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DENND3	HGNC	ENSG00000105339	63	0	0	119	19	13.77	-	-	-	T	142161849	C	T	142161849	3	4	709	1	0	0	0	0	1	0	0	0	4468	845	30	2	769	2	DENND3	8	142161849	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	20871442	142161849	4202173	37	62218										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18829873	18829873	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tccccacacagttggaagacAtcagggccttgctcgctgcc	10	15	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	9	18829873	18829873	A	T	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	1	known	missense	c.250	p.I84F	0.996	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	123	0	0	105	13	11.02	-	-	-	T	18829873	A	T	18829873	3	4	709	1	0	0	0	0	1	0	0	0	274	217	8	5	4241	5	ADAMTSL1	9	18829873	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09		18829873	122383558	38	62219										
RUSC2	0	genome.wustl.edu	37	chr9	35558279	35558279	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgccgtccgcgccgtgctggAggatgggctcaaggcctttg	16	12	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	9	35558279	35558279	A	G	SNP	RUSC2	ENST00000361226	human	ensembl	69_37n	1	known	missense	c.3146	p.E1049G	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853	71	0	0	70	12	14.63	-	-	-	G	35558279	A	G	35558279	3	3	709	1	0	0	0	0	1	0	0	0	13837	304	11	5	3168	5	RUSC2	9	35558279	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	16728406	35558279	105655152	39	62220										
PRPF4	0	genome.wustl.edu	37	chr9	116053913	116053913	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gccacttgctcatatgacagGaccttcaagctgtggatggc	11	11	2	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	9	116053913	116053913	G	C	SNP	PRPF4	ENST00000374198	human	ensembl	69_37n	1	known	missense	c.1542	p.R514S	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875	38	0	0	43	15	25.86	-	-	-	C	116053913	G	C	116053913	3	2	709	1	0	0	0	0	1	0	0	0	12651	1165	41	2	1596	2	PRPF4	9	116053913	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	80495634	116053913	25159518	40	62221										
C10orf71	0	genome.wustl.edu	37	chr10	50530920	50530920	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aagtacgttcagggagaggaAaagtaccccaaaaccagccc	10	11	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	10	50530920	50530920	A	C	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.330	p.E110D	0.001	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	70	0	0	65	14	17.72	-	-	-	C	50530920	A	C	50530920	3	2	709	1	0	0	0	0	1	0	0	0	1624	11	1	5	332	5	C10orf71	10	50530920	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09		50530920	85003827	41	62222										
FGFR2	0	genome.wustl.edu	37	chr10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgtgtgcaggctccaagaagAtttatgatattcttgtgttt	10	5	1	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	10	123258034	123258034	A	T	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1650	p.N550K	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	193	0	0	130	41	23.84	-	-	-	T	123258034	A	T	123258034	3	4	709	1	0	0	0	0	1	0	0	0	5912	330	12	5	950	5	FGFR2	10	123258034	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	72727114	123258034	12276713	42	62223										
ZRANB1	0	genome.wustl.edu	37	chr10	126673532	126673532	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtacatccctgtctgatggaGaggaagatgaggatgatgaa	14	5	1	6			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	10	126673532	126673532	G	C	SNP	ZRANB1	ENST00000359653	human	ensembl	69_37n	1	known	missense	c.2098	p.E700Q	1.000	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995	34	0	0	43	7	14	-	-	-	C	126673532	G	C	126673532	3	2	709	1	0	0	0	0	1	0	0	0	18315	943	33	2	2132	2	ZRANB1	10	126673532	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	3415498	126673532	8861215	43	62224										
DCHS1	0	genome.wustl.edu	37	chr11	6643297	6643297	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtgggccacggcagtgatgaGgggtggtgggtcgatacggg	22	6	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	6643297	6643297	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.9610	p.L3204V	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	59	0	0	49	7	12.07	-	-	-	C	6643297	G	C	6643297	3	2	709	1	0	0	0	0	1	0	0	0	4318	1000	35	4	290	4	DCHS1	11	6643297	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09		6643297	128363219	44	62225										
OR6A2	0	genome.wustl.edu	37	chr11	6816236	6816236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ccttatagcgtccagcagccGaaggaatgtgcatcacagca	10	12	1	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	6816236	6816236	G	A	SNP	OR6A2	ENST00000332601	human	ensembl	69_37n	-1	known	missense	c.704	p.S235L	0.125	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	41	0	0	44	6	12	-	-	-	A	6816236	G	A	6816236	3	1	709	1	0	0	0	0	1	0	0	0	11259	1059	37	1	283	1	OR6A2	11	6816236	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	172939	6816236	128190280	45	62226										
OR5D13	0	genome.wustl.edu	37	chr11	55541722	55541722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tcctaatcctaaaacttctaGcctcatagttacagtggctt	5	11	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	55541722	55541722	G	A	SNP	OR5D13	ENST00000361760	human	ensembl	69_37n	1	known	missense	c.809	p.S270N	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877	68	0	0	42	14	25	-	-	-	A	55541722	G	A	55541722	3	1	709	1	0	0	0	0	1	0	0	0	11227	971	34	4	811	4	OR5D13	11	55541722	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	48725486	55541722	79464794	46	62227										
OR5M9	0	genome.wustl.edu	37	chr11	56230715	56230715	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	caggaaaaagtacatgggacTctgaagctgaggactgatgc	13	7	1	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	56230715	56230715	T	C	SNP	OR5M9	ENST00000279791	human	ensembl	69_37n	-1	known	missense	c.163	p.S55G	0.164	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M9	HGNC	ENSG00000150269	41	0	0	36	17	32.08	-	-	-	C	56230715	T	C	56230715	3	2	709	1	0	0	0	0	1	0	0	0	11250	1551	54	5	771	5	OR5M9	11	56230715	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	688993	56230715	78775801	47	62228										
OR1S2	0	genome.wustl.edu	37	chr11	57970919	57970919	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gagaaggctttccactttccCtgtgtggatgatactcccag	10	11	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	57970919	57970919	C	A	SNP	OR1S2	ENST00000302592	human	ensembl	69_37n	-1	known	missense	c.735	p.Q245H	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	207	0	0	118	32	21.33	-	-	-	A	57970919	C	A	57970919	3	1	709	1	0	0	0	0	1	0	0	0	11046	680	24	4	245	4	OR1S2	11	57970919	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	1740204	57970919	77035597	48	62229										
OR5B12	0	genome.wustl.edu	37	chr11	58207097	58207097	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aagagaggaggagcatcacaGaaaaagtgttcaactacatt	10	6	2	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	58207097	58207097	G	T	SNP	OR5B12	ENST00000302572	human	ensembl	69_37n	-1	known	missense	c.528	p.F176L	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5B12	HGNC	ENSG00000172362	61	0	0	68	18	20.93	-	-	-	T	58207097	G	T	58207097	3	4	709	1	0	0	0	0	1	0	0	0	11221	933	33	2	420	2	OR5B12	11	58207097	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	236178	58207097	76799419	49	62230										
VWCE	0	genome.wustl.edu	37	chr11	61026440	61026440	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aggagcccctggggaagctaGaggtagagtgggggctcctg	19	8	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	61026440	61026440	G	C	SNP	VWCE	ENST00000335613	human	ensembl	69_37n	-1	known	missense	c.2575	p.L859V	0.997	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	27	0	0	27	11	28.95	-	-	-	C	61026440	G	C	61026440	3	2	709	1	0	0	0	0	1	0	0	0	17342	933	33	2	296	2	VWCE	11	61026440	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	2819343	61026440	73980076	50	62231										
SLC22A25	0	genome.wustl.edu	37	chr11	62948206	62948206	+	Frame_Shift_Del	DEL	C	C	-													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tcacaaagagaatgctttttCtgtgctgcctccagttcttg							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	62948206	62948206	C	-	DEL	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	frame_shift_del	c.996	p.K334fs	0.018	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	141	0	0	91	15	13.76	-	-	-	-	62948206	C	-	62948206	7	5	709	1	0	1	0	1	0	0	0	0	14543	912	32	0	663	0	SLC22A25	11	62948206	Frame_Shift_Del	DEL	C	TCGA-D8-A1XL-01A-11D-A14K-09	1921766	62948206	72058310	51	62232										
IL18BP	0	genome.wustl.edu	37	chr11	71712371	71712371	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctgtgggaggggagcaccagGtgagggtcgcagcagccagg	20	9	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	71712371	71712371	G	C	SNP	IL18BP	ENST00000260049	human	ensembl	69_37n	1	known	splice_site	c.359+1	e3+1	1.000	-	-	-	no_errors	IL18BP	HGNC	ENSG00000137496	46	0	0	46	7	13.21	-	-	-	C	71712371	G	C	71712371	5	2	709	1	0	0	0	0	0	0	1	0	7700	1275	44	4	370	4	IL18BP	11	71712371	Splice_Site	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	8764165	71712371	63294145	52	62233										
HTR3B	0	genome.wustl.edu	37	chr11	113815320	113815320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttcttcaccatctgcatggcCttcttggttctcagcttagc	7	13	5	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	113815320	113815320	C	T	SNP	HTR3B	ENST00000543092	human	ensembl	69_37n	1	putative	missense	c.508	p.L170F	0.995	NULL	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_5HT3_rcpt_A,prints_Neur_channel	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HTR3B	HGNC	ENSG00000149305	235	0	0	161	32	16.58	-	-	-	T	113815320	C	T	113815320	3	4	709	1	0	0	0	0	1	0	0	0	7499	668	24	4	963	4	HTR3B	11	113815320	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	42102949	113815320	21191196	53	62234										
C11orf63	0	genome.wustl.edu	37	chr11	122756780	122756780	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtatggagcccgacagcttaGacgaggaggaaagccctcga	14	10	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	11	122756780	122756780	G	C	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.223	p.D75H	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	46	0	0	44	7	13.73	-	-	-	C	122756780	G	C	122756780	3	2	709	1	0	0	0	0	1	0	0	0	1665	942	33	2	225	2	C11orf63	11	122756780	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	8941460	122756780	12249736	54	62235										
CD163L1	0	genome.wustl.edu	37	chr12	7548822	7548822	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gccaaatttttccatatcctGtagaagcgtttcccagaccc	6	13	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	7548822	7548822	G	C	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.1919	p.T640R	0.002	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	101	0	0	54	14	20.59	-	-	-	C	7548822	G	C	7548822	3	2	709	1	0	0	0	0	1	0	0	0	2997	1377	48	4	2490	4	CD163L1	12	7548822	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09		7548822	126303073	55	62236										
HSD17B6	0	genome.wustl.edu	37	chr12	57167880	57167880	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	acaggctggagacggtgaccCtggatgttaccaagatggag	15	8	0	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	57167880	57167880	C	G	SNP	HSD17B6	ENST00000322165	human	ensembl	69_37n	1	known	missense	c.244	p.L82V	0.996	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B6	HGNC	ENSG00000025423	39	0	0	74	13	14.94	-	-	-	G	57167880	C	G	57167880	3	3	709	1	0	0	0	0	1	0	0	0	7438	680	24	4	246	4	HSD17B6	12	57167880	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	49619058	57167880	76684015	56	62237										
PTPRB	0	genome.wustl.edu	37	chr12	70964942	70964942	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	acaaggtgaaaaggaggaaaTactttcatgtcattgaagag	11	4	2	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	70964942	70964942	T	G	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.3234	p.V1078	0.515	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	84	0	0	60	24	28.57	-	-	-	G	70964942	T	G	70964942	2	3	709	1	0	0	0	0	0	0	0	1	12879	1393	49	5		5	PTPRB	12	70964942	Silent	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	13797062	70964942	62886953	57	62238										
SELPLG	0	genome.wustl.edu	37	chr12	109017662	109017662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctgccagtggagtggtctgtGcctccgtgggcactggttga	16	10	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	109017662	109017662	G	A	SNP	SELPLG	ENST00000550948	human	ensembl	69_37n	-1	known	missense	c.422	p.A141V	0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876	862	0	0	422	106	20	-	-	-	A	109017662	G	A	109017662	3	1	709	1	0	0	0	0	1	0	0	0	14108	1333	46	4	820	4	SELPLG	12	109017662	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	38052720	109017662	24834233	58	62239										
DNAH10	0	genome.wustl.edu	37	chr12	124343746	124343746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	catgttaacccgccacacgaCgatggtggtggggcccacca	12	14	0	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	124343746	124343746	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.6326	p.T2109M	0.998	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	54	0	0	37	16	30.19	-	-	-	T	124343746	C	T	124343746	3	4	709	1	0	0	0	0	1	0	0	0	4634	536	19	1	6472	1	DNAH10	12	124343746	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	15326084	124343746	9508149	59	62240										
DNAH10	0	genome.wustl.edu	37	chr12	124418005	124418005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ggaccgctccaccttgttcaCacaagtgaccaagttccagg	9	14	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	12	124418005	124418005	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.13070	p.T4357I	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	13	0	0	16	6	27.27	-	-	-	T	124418005	C	T	124418005	3	4	709	1	0	0	0	0	1	0	0	0	4634	478	17	4	13372	4	DNAH10	12	124418005	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	74259	124418005	9433890	60	62241										
PCK2	0	genome.wustl.edu	37	chr14	24567421	24567421	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctctcccccagctggctggcCcgcacagaccccaaggatgt	10	18	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	14	24567421	24567421	C	A	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	silent	c.285	p.A95	1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	31	0	0	35	8	18.6	-	-	-	A	24567421	C	A	24567421	2	1	709	1	0	0	0	0	0	0	0	1	11655	610	22	4		4	PCK2	14	24567421	Silent	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09		24567421	82782119	61	62242										
MDGA2	0	genome.wustl.edu	37	chr14	47687332	47687332	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	aatatttgtaatcctcaaagTctcattgaagacacttgagt	6	7	2	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	14	47687332	47687332	T	A	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.487	p.T163S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	100	0	0	101	22	17.74	-	-	-	A	47687332	T	A	47687332	3	1	709	1	0	0	0	0	1	0	0	0	9478	1667	58	5	2650	5	MDGA2	14	47687332	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	23119911	47687332	59662208	62	62243										
KIAA0586	0	genome.wustl.edu	37	chr14	58925191	58925191	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttcctttttctcttttatagAgagatgtcagagaaaattag	7	5	2	3			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	14	58925191	58925191	A	G	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	silent	c.1539	p.R513	0.998	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	34	0	0	35	8	18.6	-	-	-	G	58925191	A	G	58925191	2	3	709	1	0	0	0	0	0	0	0	1	8238	318	11	5		5	KIAA0586	14	58925191	Silent	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	11237859	58925191	48424349	63	62244										
C14orf166B	0	genome.wustl.edu	37	chr14	77323744	77323744	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttttcctgaatcccataaatAtggatggggctattttactt	7	7	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	14	77323744	77323744	A	G	SNP	C14orf166B	ENST00000393774	human	ensembl	69_37n	1	known	missense	c.1030	p.M344V	0.528	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	C14orf166B	HGNC	ENSG00000100565	100	0	0	62	16	20.25	-	-	-	G	77323744	A	G	77323744	3	3	709	1	0	0	0	0	1	0	0	0	1769	449	16	5	1068	5	C14orf166B	14	77323744	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	18398553	77323744	30025796	64	62245										
CCDC88C	0	genome.wustl.edu	37	chr14	91810002	91810002	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gatttcctccatgctcttccCtagatcaagagagcaacaca	6	13	2	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	14	91810002	91810002	C	G	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	splice_site	c.341-1	e5-1	1.000	-	-	-	no_errors	CCDC88C	HGNC	ENSG00000015133	63	0	0	49	19	27.94	-	-	-	G	91810002	C	G	91810002	5	3	709	1	0	0	0	0	0	0	1	0	2892	695	24	4	5850	4	CCDC88C	14	91810002	Splice_Site	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	14486258	91810002	15539538	65	62246										
RSL1D1	0	genome.wustl.edu	37	chr16	11940658	11940658	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cagaaggcggagcttggcttCataggatttatattccttct	10	8	2	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	16	11940658	11940658	C	T	SNP	RSL1D1	ENST00000571133	human	ensembl	69_37n	-1	known	missense	c.427	p.E143K	1.000	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	pfam_Ribosomal_L1,superfamily_Ribosomal_L1_SF	-	no_errors	RSL1D1	HGNC	ENSG00000171490	77	0	0	46	31	40.26	-	-	-	T	11940658	C	T	11940658	3	4	709	1	0	0	0	0	1	0	0	0	13786	835	29	2	1069	2	RSL1D1	16	11940658	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09		11940658	78414095	66	62247										
NLRP1	0	genome.wustl.edu	37	chr17	5461874	5461874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	cagtggagggactccagagaGtgtggctgcagcagcagctg	17	9	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	5461874	5461874	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	silent	c.2142	p.H714	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	38	0	0	10	18	64.29	-	-	-	A	5461874	G	A	5461874	2	1	709	1	0	0	0	0	0	0	0	1	10543	1020	36	4		4	NLRP1	17	5461874	Silent	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09		5461874	75733336	67	62248										
TP53	0	genome.wustl.edu	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	16	11	1	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	75	0	0	24	18	42.86	-	-	-	A	7577539	G	A	7577539	3	1	709	1	0	0	0	0	1	0	0	0	16477	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	2115665	7577539	73617671	68	62249										
AURKB	0	genome.wustl.edu	37	chr17	8110509	8110509	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	catactgcaggtgggcctggAtttcgatctctctgcgcagc	12	12	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	8110509	8110509	A	G	SNP	AURKB	ENST00000585124	human	ensembl	69_37n	-1	known	missense	c.383	p.I128T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKB	HGNC	ENSG00000178999	71	0	0	34	10	22.73	-	-	-	G	8110509	A	G	8110509	3	3	709	1	0	0	0	0	1	0	0	0	1227	333	12	5	671	5	AURKB	17	8110509	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	532970	8110509	73084701	69	62250										
EVI2B	0	genome.wustl.edu	37	chr17	29632390	29632390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	atagacagctggtgttggttGtccagcagtgactttggcag	14	7	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	29632390	29632390	G	T	SNP	EVI2B	ENST00000544462	human	ensembl	69_37n	-1	known	missense	c.283	p.Q95K	0.018	NULL	NULL	-	no_errors	EVI2B	HGNC	ENSG00000185862	402	4	0.99	198	113	36.22	-	-	-	T	29632390	G	T	29632390	3	4	709	1	0	0	0	0	1	0	0	0	5325	1386	48	4	1112	4	EVI2B	17	29632390	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	21521881	29632390	51562820	70	62251										
KRT31	0	genome.wustl.edu	37	chr17	39550341	39550341	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgcagggggcaggagggacaCaagaggtacagggattggag	20	5	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	39550341	39550341	C	G	SNP	KRT31	ENST00000251645	human	ensembl	69_37n	-1	known	missense	c.1178	p.C393S	0.977	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796	94	0	0	91	14	13.33	-	-	-	G	39550341	C	G	39550341	3	3	709	1	0	0	0	0	1	0	0	0	8520	478	17	4	76	4	KRT31	17	39550341	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	9917951	39550341	41644869	71	62252										
LLGL2	0	genome.wustl.edu	37	chr17	73555430	73555430	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtggcaacgtgtttgtggtgCagctgccagcttttcgtgcg	15	9	0	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	17	73555430	73555430	C	G	SNP	LLGL2	ENST00000392550	human	ensembl	69_37n	1	known	missense	c.469	p.Q157E	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	63	0	0	81	9	10	-	-	-	G	73555430	C	G	73555430	3	3	709	1	0	0	0	0	1	0	0	0	8890	711	25	4	487	4	LLGL2	17	73555430	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	34005089	73555430	7639780	72	62253										
ACTL9	0	genome.wustl.edu	37	chr19	8808499	8808499	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gacacgaccgtgggcgtagaCagacagcaccgactgcgatg	14	12	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	19	8808499	8808499	C	G	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	missense	c.553	p.V185L	0.973	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	26	0	0	24	9	27.27	-	-	-	G	8808499	C	G	8808499	3	3	709	1	0	0	0	0	1	0	0	0	203	478	17	4	701	4	ACTL9	19	8808499	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09		8808499	50320484	73	62254										
ZNF177	0	genome.wustl.edu	37	chr19	9492136	9492136	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gcagtgactgtggaaaagccTtcatcgatcagtcatccctt	9	11	3	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	19	9492136	9492136	T	G	SNP	ZNF177	ENST00000434737	human	ensembl	69_37n	1	known	missense	c.1129	p.F377V	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629	118	0	0	58	29	33.33	-	-	-	G	9492136	T	G	9492136	3	3	709	1	0	0	0	0	1	0	0	0	17842	1609	56	5	1147	5	ZNF177	19	9492136	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	683637	9492136	49636847	74	62255										
ATG4D	0	genome.wustl.edu	37	chr19	10659619	10659619	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	acgcctggtggccaggccagAccccacagccgagtggaagt	14	14	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	19	10659619	10659619	A	T	SNP	ATG4D	ENST00000309469	human	ensembl	69_37n	1	known	missense	c.875	p.D292V	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734	81	0	0	51	16	23.19	-	-	-	T	10659619	A	T	10659619	3	4	709	1	0	0	0	0	1	0	0	0	1103	275	10	5	897	5	ATG4D	19	10659619	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	1167483	10659619	48469364	75	62256										
CPAMD8	0	genome.wustl.edu	37	chr19	17039931	17039931	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tgctgtgtcctggggcccagAagacaaggccacacgggcat	14	12	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	19	17039931	17039931	A	T	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.3106	p.S1036T	0.482	pfam_Methyltransf_FA	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	44	0	0	51	8	13.56	-	-	-	T	17039931	A	T	17039931	3	4	709	1	0	0	0	0	1	0	0	0	3825	246	9	5	2768	5	CPAMD8	19	17039931	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	6380312	17039931	42089052	76	62257										
LILRB1	0	genome.wustl.edu	37	chr19	55147063	55147063	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gtggagatggacactcgggtGagaccccacccctgtcccag	13	14	0	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	19	55147063	55147063	G	A	SNP	LILRB1	ENST00000462628	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.485	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	50	0	0	51	12	19.05	-	-	-	A	55147063	G	A	55147063	1	1	709	0	1	0	0	0	0	0	0	0	8845	1305	45	2		2	LILRB1	19	55147063	RNA	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	38107132	55147063	3981920	77	62258										
ACSS2	0	genome.wustl.edu	37	chr20	33501263	33501263	+	Silent	SNP	G	G	C													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gagcttgtggtggccatgctGgcatgtgcccgcattggggc							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	20	33501263	33501263	G	C	SNP	ACSS2	ENST00000360596	human	ensembl	69_37n	1	known	silent	c.534	p.L178	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	62	0	0	83	21	20.19	-	-	-	C	33501263	G	C	33501263	2	2	709	1	0	0	0	0	0	0	0	1	189	1335	47	4		4	ACSS2	20	33501263	Silent	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09		33501263	29524257	78	62259	455	2								
ACSS2	0	genome.wustl.edu	37	chr20	33501264	33501264	+	Missense_Mutation	SNP	G	G	T													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	agcttgtggtggccatgctgGcatgtgcccgcattggggct							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	20	33501264	33501264	G	T	SNP	ACSS2	ENST00000360596	human	ensembl	69_37n	1	known	missense	c.535	p.A179S	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Ac_CoA_lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	63	0	0	83	20	19.42	-	-	-	T	33501264	G	T	33501264	3	4	709	1	0	0	0	0	1	0	0	0	189	1203	42	4	549	4	ACSS2	20	33501264	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09	1	33501264	29524256	79	62260	455	2								
KRTAP15-1	0	genome.wustl.edu	37	chr21	31812853	31812853	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	catcctgcactttggccagaTcctatcagacatcctgttac	6	14	1	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	21	31812853	31812853	T	A	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	1	known	missense	c.208	p.S70T	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	62	0	0	40	19	32.2	-	-	-	A	31812853	T	A	31812853	3	1	709	1	0	0	0	0	1	0	0	0	8579	1435	50	5	210	5	KRTAP15-1	21	31812853	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09		31812853	16317042	80	62261										
KCNJ15	0	genome.wustl.edu	37	chr21	39671727	39671727	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ctgagaccatcaagttcagcCactgtgcagtcatcaccaag	8	13	4	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	21	39671727	39671727	C	A	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.544	p.H182N	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	30	0	0	19	9	32.14	-	-	-	A	39671727	C	A	39671727	3	1	709	1	0	0	0	0	1	0	0	0	8103	594	21	4	546	4	KCNJ15	21	39671727	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	7858874	39671727	8458168	81	62262										
PLA2G3	0	genome.wustl.edu	37	chr22	31532946	31532946	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttgggcgctgttgagcagctGgaactcgatttcccggggcc	15	11	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	22	31532946	31532946	G	T	SNP	PLA2G3	ENST00000215885	human	ensembl	69_37n	-1	known	missense	c.1147	p.Q383K	1.000	pfam_PLipase_A2_euk,superfamily_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2	-	no_errors	PLA2G3	HGNC	ENSG00000100078	52	0	0	97	13	11.82	-	-	-	T	31532946	G	T	31532946	3	4	709	1	0	0	0	0	1	0	0	0	12074	1357	47	4	394	4	PLA2G3	22	31532946	Missense_Mutation	SNP	G	TCGA-D8-A1XL-01A-11D-A14K-09		31532946	19771620	82	62263										
MXRA5	0	genome.wustl.edu	37	chrX	3228241	3228241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tggggagcgtccaggagaaaCgtccctgcccagccccggga	15	14	0	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	3228241	3228241	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.8003	p.R2668H	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	25	0	0	36	6	14.29	-	-	-	T	3228241	C	T	3228241	3	4	709	1	0	0	0	0	1	0	0	0	10075	536	19	1	487	1	MXRA5	23	3228241	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09		3228241	152042319	83	62264										
CTPS2	0	genome.wustl.edu	37	chrX	16711263	16711263	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	tacccactgtcctcaactcaCcagatctggagacaggccta	7	15	3	2			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	16711263	16711263	C	G	SNP	CTPS2	ENST00000359276	human	ensembl	69_37n	-1	known	splice_site	c.639+1	e5+1	1.000	-	-	-	no_errors	CTPS2	HGNC	ENSG00000047230	91	0	0	51	17	25	-	-	-	G	16711263	C	G	16711263	5	3	709	1	0	0	0	0	0	0	1	0	4055	521	18	4	1172	4	CTPS2	23	16711263	Splice_Site	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	13483022	16711263	138559297	84	62265										
POLA1	0	genome.wustl.edu	37	chrX	24717586	24717587	+	Frame_Shift_Ins	INS	-	-	A													0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	atcttctcgagcccggcgagINSaaaaaaaatcaaagaagggg							TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	24717586	24717587	-	A	INS	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	frame_shift_ins	c.88_89	p.S33fs	1.000:1.000	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	16	0	0	37	6	13.95	-	-	-	A	24717587	-	A	24717586	7	5	709	1	0	1	1	0	0	0	0	0	12261	943	33	0	76	0	POLA1	23	24717586	Frame_Shift_Ins	INS	-	TCGA-D8-A1XL-01A-11D-A14K-09	8006323	24717586	130552974	85	62266										
IL13RA2	0	genome.wustl.edu	37	chrX	114242525	114242525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	ttgtttatcactccactcacTccaaattccgtcatctgagc	4	14	4	1			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	114242525	114242525	T	C	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.967	p.S323G	1.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	380	0	0	209	65	23.72	-	-	-	C	114242525	T	C	114242525	3	2	709	1	0	0	0	0	1	0	0	0	7684	1551	54	5	187	5	IL13RA2	23	114242525	Missense_Mutation	SNP	T	TCGA-D8-A1XL-01A-11D-A14K-09	89524939	114242525	41028035	86	62267										
NKRF	0	genome.wustl.edu	37	chrX	118724267	118724267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	acactcgacaacgccatgtgCgatttggcatcatctcatat	7	12	2	0			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	118724267	118724267	C	T	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	missense	c.1166	p.R389H	1.000	smart_Ds-RNA-bd	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	79	0	0	64	19	22.89	-	-	-	T	118724267	C	T	118724267	3	4	709	1	0	0	0	0	1	0	0	0	10519	768	27	1	955	1	NKRF	23	118724267	Missense_Mutation	SNP	C	TCGA-D8-A1XL-01A-11D-A14K-09	4481742	118724267	36546293	87	62268										
HS6ST2	0	genome.wustl.edu	37	chrX	131762777	131762777	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.503630094551496	1.44995864350703	1.90078612089997	1.10159195643067	1	1	0	gctgaaactcagtgaggccgAagaacgccatgtgcttcaga	12	10	2	4			TCGA-D8-A1XL-01A-11D-A14K-09	TCGA-D8-A1XL-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28d44e6e-c73f-4788-8ad4-2bd6572f643d	a64ed39f-0699-4997-b8f4-011090174b75	X	131762777	131762777	A	C	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1412	p.F471C	0.975	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	78	0	0	53	21	28.38	-	-	-	C	131762777	A	C	131762777	3	2	709	1	0	0	0	0	1	0	0	0	7422	246	9	5	529	5	HS6ST2	23	131762777	Missense_Mutation	SNP	A	TCGA-D8-A1XL-01A-11D-A14K-09	13038510	131762777	23507783	88	62269										
KLHL17	0	genome.wustl.edu	37	chr1	897038	897038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gcgagagccgccagacccacGtgacgctgcacgacatcgac	12	16	0	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	897038	897038	G	A	SNP	KLHL17	ENST00000338591	human	ensembl	69_37n	1	known	missense	c.397	p.V133M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961	51	0	0	29	10	25.64	-	-	-	A	897038	G	A	897038	3	1	710	1	0	0	0	0	1	0	0	0	8425	1145	40	1	407	1	KLHL17	1	897038	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		897038	248353583	1	62270										
LRRC41	0	genome.wustl.edu	37	chr1	46751244	46751244	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	cacttccccaatctccatctCttcgccatcctccttctcgc	2	21	3	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	46751244	46751244	C	T	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1285	p.E429K	0.994	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	45	0	0	47	7	12.96	-	-	-	T	46751244	C	T	46751244	3	4	710	1	0	0	0	0	1	0	0	0	9065	922	32	2	1181	2	LRRC41	1	46751244	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	45854206	46751244	202499377	2	62271										
DOCK7	0	genome.wustl.edu	37	chr1	62970400	62970400	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ctacagtgtcggagaagcctGaggcataaatcagcacactg	11	10	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	62970400	62970400	G	C	SNP	DOCK7	ENST00000454575	human	ensembl	69_37n	-1	known	missense	c.2152	p.Q718E	0.996	superfamily_ARM-type_fold	pfam_DOCK,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK7	HGNC	ENSG00000116641	49	0	0	65	19	22.62	-	-	-	C	62970400	G	C	62970400	3	2	710	1	0	0	0	0	1	0	0	0	4727	1277	45	2	1813	2	DOCK7	1	62970400	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	16219156	62970400	186280221	3	62272										
COL11A1	0	genome.wustl.edu	37	chr1	103461544	103461544	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gtgaaaacaatttaacgttaCctttactccccgggggcccg	9	12	0	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	103461544	103461544	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	splice_site	c.2331+1	e27+1	1.000	-	-	-	no_errors	COL11A1	HGNC	ENSG00000060718	23	0	0	19	19	50	-	-	-	T	103461544	C	T	103461544	5	4	710	1	0	0	0	0	0	0	1	0	3697	521	18	4	3288	4	COL11A1	1	103461544	Splice_Site	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	40491144	103461544	145789077	4	62273										
CD2	0	genome.wustl.edu	37	chr1	117311125	117311125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agcccacagagtagctactgAagaaaggggccggaagcccc	13	12	0	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	117311125	117311125	A	C	SNP	CD2	ENST00000369478	human	ensembl	69_37n	1	known	missense	c.776	p.E259A	0.011	NULL	pfam_Ig_C2-set,pfam_Ig_V-set,prints_T-cell_sdhesion_molc_CD2	-	no_errors	CD2	HGNC	ENSG00000116824	32	0	0	18	12	40	-	-	-	C	117311125	A	C	117311125	3	2	710	1	0	0	0	0	1	0	0	0	3008	246	9	5	794	5	CD2	1	117311125	Missense_Mutation	SNP	A	TCGA-D8-A1XM-01A-21D-A14K-09	13849581	117311125	131939496	5	62274										
FAM78B	0	genome.wustl.edu	37	chr1	166135414	166135414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gggcactggtcgatggtggcGcacacatcgtacaccacgat	13	12	0	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	166135414	166135414	G	A	SNP	FAM78B	ENST00000435676	human	ensembl	69_37n	-1	known	missense	c.49	p.R17C	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM78B	HGNC	ENSG00000188859	27	0	0	22	9	29.03	-	-	-	A	166135414	G	A	166135414	3	1	710	1	0	0	0	0	1	0	0	0	5672	1079	38	1	721	1	FAM78B	1	166135414	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	48824289	166135414	83115207	6	62275										
LOXL3	0	genome.wustl.edu	37	chr2	74763222	74763222	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ttcttgtgggggcacttccaGagggagagctcctgtccaga	14	10	1	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	74763222	74763222	G	A	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	silent	c.1149	p.L383	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	34	0	0	32	14	30.43	-	-	-	A	74763222	G	A	74763222	2	1	710	1	0	0	0	0	0	0	0	1	8967	929	33	2		2	LOXL3	2	74763222	Silent	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		74763222	168436151	7	62276										
INPP4A	0	genome.wustl.edu	37	chr2	99204011	99204011	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gcatttaattccctgcagctGaaggctttccccaagcatta	7	12	0	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	99204011	99204011	G	A	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	silent	c.2874	p.L958	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4A	HGNC	ENSG00000040933	83	0	0	47	16	25	-	-	-	A	99204011	G	A	99204011	2	1	710	1	0	0	0	0	0	0	0	1	7806	1277	45	2		2	INPP4A	2	99204011	Silent	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	24440789	99204011	143995362	8	62277										
DDX18	0	genome.wustl.edu	37	chr2	118582184	118582184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	cttttctgccacccaaactcGaaaagttgaagacctggcaa	7	12	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	118582184	118582184	G	A	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	missense	c.1106	p.R369Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	142	0	0	81	32	28.32	-	-	-	A	118582184	G	A	118582184	3	1	710	1	0	0	0	0	1	0	0	0	4376	1058	37	1	1136	1	DDX18	2	118582184	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	19378173	118582184	124617189	9	62278										
DPP4	0	genome.wustl.edu	37	chr2	162929936	162929936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gttcagcagaaccacgggcaCggtgatgatggtgacaagcg	15	9	1	4			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	162929936	162929936	C	T	SNP	DPP4	ENST00000360534	human	ensembl	69_37n	-1	known	missense	c.67	p.V23M	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635	47	0	0	42	8	16	-	-	-	T	162929936	C	T	162929936	3	4	710	1	0	0	0	0	1	0	0	0	4764	536	19	1	2333	1	DPP4	2	162929936	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	44347752	162929936	80269437	10	62279										
ATP2B2	0	genome.wustl.edu	37	chr3	10400565	10400565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tctcgtcccggtcgcggggcCggaagacacgaggctctccc	14	16	2	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	10400565	10400565	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.1946	p.R649Q	1.000	superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	14	0	0	10	5	33.33	-	-	-	T	10400565	C	T	10400565	3	4	710	1	0	0	0	0	1	0	0	0	1144	652	23	1	1825	1	ATP2B2	3	10400565	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		10400565	187621865	11	62280										
XPC	0	genome.wustl.edu	37	chr3	14197851	14197851	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gcacctggagtagaccgcttCtccacgacaatacccaagga	9	14	1	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	14197851	14197851	C	T	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	missense	c.2017	p.E673K	1.000	pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	59	0	0	42	14	25	-	-	-	T	14197851	C	T	14197851	3	4	710	1	0	0	0	0	1	0	0	0	17538	922	32	2		2	XPC	3	14197851	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	3797286	14197851	183824579	12	62281										
VPRBP	0	genome.wustl.edu	37	chr3	51458364	51458364	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tatctgggccacacacacaaTtgatgataatctgaagtgct	8	9	2	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	51458364	51458364	T	C	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.713	p.N238S	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	65	0	0	50	13	20.63	-	-	-	C	51458364	T	C	51458364	3	2	710	1	0	0	0	0	1	0	0	0	17282	1493	52	5	2507	5	VPRBP	3	51458364	Missense_Mutation	SNP	T	TCGA-D8-A1XM-01A-21D-A14K-09	37260513	51458364	146564066	13	62282										
MED12L	0	genome.wustl.edu	37	chr3	151075105	151075105	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gtctgcatcgtggctgttctCaggcgctatcacagttgtct	11	11	4	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	151075105	151075105	C	A	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.2661	p.L887	0.999	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	95	0	0	73	26	26.26	-	-	-	A	151075105	C	A	151075105	2	1	710	1	0	0	0	0	0	0	0	1	9500	813	29	2		2	MED12L	3	151075105	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	99616741	151075105	46947325	14	62283										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	81	0	0	62	23	27.06	-	-	-	A	178936082	G	A	178936082	3	1	710	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	27860977	178936082	19086348	15	62284										
AP3B1	0	genome.wustl.edu	37	chr5	77524009	77524009	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gcttatggacaggagtgcaaGatcctgctgttcttcagcat	11	9	2	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	5	77524009	77524009	G	A	SNP	AP3B1	ENST00000255194	human	ensembl	69_37n	-1	known	missense	c.334	p.L112F	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_bsu	-	no_errors	AP3B1	HGNC	ENSG00000132842	87	0	0	72	21	22.58	-	-	-	A	77524009	G	A	77524009	3	1	710	1	0	0	0	0	1	0	0	0	745	942	33	2	3046	2	AP3B1	5	77524009	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		77524009	103391251	16	62285										
NUDT12	0	genome.wustl.edu	37	chr5	102888118	102888118	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agcatcttctattgtctctcCtaatgaaatggagcaaaaga	7	8	3	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	5	102888118	102888118	C	T	SNP	NUDT12	ENST00000230792	human	ensembl	69_37n	-1	known	splice_site	c.1079-1	e5-1	1.000	-	-	-	no_errors	NUDT12	HGNC	ENSG00000112874	198	0	0	125	46	26.9	-	-	-	T	102888118	C	T	102888118	5	4	710	1	0	0	0	0	0	0	1	0	10801	695	24	4	318	4	NUDT12	5	102888118	Splice_Site	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	25364109	102888118	78027142	17	62286										
DST	0	genome.wustl.edu	37	chr6	56437729	56437729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tatgacttgcttctgaaaacCgagcagacaagtctttcatt	7	9	3	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	56437729	56437729	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.13277	p.R4426Q	0.993	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	183	0	0	152	46	23.23	-	-	-	T	56437729	C	T	56437729	3	4	710	1	0	0	0	0	1	0	0	0	4818	652	23	1	10222	1	DST	6	56437729	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		56437729	114677338	18	62287										
MED23	0	genome.wustl.edu	37	chr6	131912640	131912640	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gctgatgacactcacaattcGatcatgaagaacaatccaat	6	10	2	4			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	131912640	131912640	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.3517	p.R1173*	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	38	0	0	20	13	39.39	-	-	-	A	131912640	G	A	131912640	4	1	710	1	0	0	0	0	0	1	0	0	9512	1066	37	1	630	1	MED23	6	131912640	Nonsense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	75474911	131912640	39202427	19	62288										
PNLDC1	0	genome.wustl.edu	37	chr6	160232782	160232782	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	cacagcctatttcctgttctCattgataccaagagtgtaac	6	11	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	160232782	160232782	C	T	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	silent	c.870	p.L290	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	114	0	0	53	71	57.26	-	-	-	T	160232782	C	T	160232782	2	4	710	1	0	0	0	0	0	0	0	1	12222	813	29	2		2	PNLDC1	6	160232782	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	28320142	160232782	10882285	20	62289										
MLLT4	0	genome.wustl.edu	37	chr6	168352584	168352584	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ggagctttcctcgggggacaGtctgtcccccgacccgtgga	14	14	1	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	168352584	168352584	G	A	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.4529	p.S1510N	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	24	0	0	9	13	59.09	-	-	-	A	168352584	G	A	168352584	3	1	710	1	0	0	0	0	1	0	0	0	9700	1029	36	4	4643	4	MLLT4	6	168352584	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	8119802	168352584	2762483	21	62290										
DGKB	0	genome.wustl.edu	37	chr7	14880851	14880851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tctgaagttgggaaaattccGaagggctgaggtgggcccat	15	7	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	7	14880851	14880851	G	A	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	missense	c.38	p.S13L	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	119	0	0	98	52	34.67	-	-	-	A	14880851	G	A	14880851	3	1	710	1	0	0	0	0	1	0	0	0	4502	1059	37	1	2491	1	DGKB	7	14880851	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		14880851	144257812	22	62291										
GPSM1	0	genome.wustl.edu	37	chr9	139229013	139229013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ctgctgtgcaggtgggcaccGaggacctgaagacactgagt	15	10	0	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	9	139229013	139229013	G	A	SNP	GPSM1	ENST00000440944	human	ensembl	69_37n	1	known	missense	c.178	p.E60K	1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	33	0	0	16	6	27.27	-	-	-	A	139229013	G	A	139229013	3	1	710	1	0	0	0	0	1	0	0	0	6785	1059	37	1	184	1	GPSM1	9	139229013	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		139229013	1984418	23	62292										
GRID1	0	genome.wustl.edu	37	chr10	87379751	87379751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	cagggctgcgtattccaccaCggccacatcccacaggaagg	11	15	0	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	87379751	87379751	C	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.2233	p.V745M	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	52	0	0	44	17	27.87	-	-	-	T	87379751	C	T	87379751	3	4	710	1	0	0	0	0	1	0	0	0	6822	536	19	1	808	1	GRID1	10	87379751	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		87379751	48154996	24	62293										
SEC23IP	0	genome.wustl.edu	37	chr10	121663612	121663612	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ctagttcagccagatccggaGagcgtggttcttggcacgga	14	10	2	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	121663612	121663612	G	C	SNP	SEC23IP	ENST00000369075	human	ensembl	69_37n	1	known	missense	c.924	p.E308D	1.000	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651	79	0	0	67	15	18.29	-	-	-	C	121663612	G	C	121663612	3	2	710	1	0	0	0	0	1	0	0	0	14081	933	33	2	938	2	SEC23IP	10	121663612	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	34283861	121663612	13871135	25	62294										
WEE1	0	genome.wustl.edu	37	chr11	9608368	9608368	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gaacaattacgaatagaattGaatgccgaaaagttcaaaaa	7	5	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	9608368	9608368	G	T	SNP	WEE1	ENST00000450114	human	ensembl	69_37n	1	known	missense	c.1752	p.L584F	1.000	superfamily_Kinase-like_dom,pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE1	HGNC	ENSG00000166483	31	0	0	25	4	13.79	-	-	-	T	9608368	G	T	9608368	3	4	710	1	0	0	0	0	1	0	0	0	17441	1281	45	2	1790	2	WEE1	11	9608368	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		9608368	125398148	26	62295										
AMBRA1	0	genome.wustl.edu	37	chr11	46568822	46568822	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gtaatatagatattatggttCacatgggtggaggctaagag	13	3	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	46568822	46568822	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	silent	c.219	p.V73	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	62	0	0	48	20	29.41	-	-	-	T	46568822	C	T	46568822	2	4	710	1	0	0	0	0	0	0	0	1	565	813	29	2		2	AMBRA1	11	46568822	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	36960454	46568822	88437694	27	62296										
OR4C15	0	genome.wustl.edu	37	chr11	55322666	55322666	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agctctctccacctgtggatCtcacattgctgttgtgattt	8	11	2	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	55322666	55322666	C	A	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	1	known	missense	c.884	p.S295Y	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	177	0	0	124	49	28.32	-	-	-	A	55322666	C	A	55322666	3	1	710	1	0	0	0	0	1	0	0	0	11121	913	32	2	886	2	OR4C15	11	55322666	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	8753844	55322666	79683850	28	62297										
SORL1	0	genome.wustl.edu	37	chr11	121393316	121393316	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tttcccagggctgttcccttCatctggctcagcgcctcagt	9	15	4	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	121393316	121393316	C	T	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	missense	c.1426	p.H476Y	1.000	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	78	0	0	62	22	26.19	-	-	-	T	121393316	C	T	121393316	3	4	710	1	0	0	0	0	1	0	0	0	15023	826	29	2	1464	2	SORL1	11	121393316	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	66070650	121393316	13613200	29	62298										
KRT6B	0	genome.wustl.edu	37	chr12	52844244	52844244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ttctcagctccgagtccagaCgaccccgttcccccacgatg	8	18	1	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	12	52844244	52844244	C	T	SNP	KRT6B	ENST00000252252	human	ensembl	69_37n	-1	known	missense	c.701	p.R234H	0.801	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479	171	0	0	166	44	20.95	-	-	-	T	52844244	C	T	52844244	3	4	710	1	0	0	0	0	1	0	0	0	8534	536	19	1	1025	1	KRT6B	12	52844244	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		52844244	81007651	30	62299										
DCD	0	genome.wustl.edu	37	chr12	55039438	55039438	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ctttggtgcctgtctggctaAccctgggtcttcacctgcat	10	13	3	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	12	55039438	55039438	A	T	SNP	DCD	ENST00000293371	human	ensembl	69_37n	-1	known	missense	c.151	p.L51I	0.001	NULL	NULL	-	no_errors	DCD	HGNC	ENSG00000161634	137	0	0	98	42	29.79	-	-	-	T	55039438	A	T	55039438	3	4	710	1	0	0	0	0	1	0	0	0	4314	40	2	5	193	5	DCD	12	55039438	Missense_Mutation	SNP	A	TCGA-D8-A1XM-01A-21D-A14K-09	2195194	55039438	78812457	31	62300										
HTR2A	0	genome.wustl.edu	37	chr13	47409635	47409635	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	atagttagaaagtaggtgatCaccatgatggttaagggaat	12	3	1	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	13	47409635	47409635	C	A	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	silent	c.753	p.V251	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	30	0	0	31	12	27.91	-	-	-	A	47409635	C	A	47409635	2	1	710	1	0	0	0	0	0	0	0	1	7495	813	29	2		2	HTR2A	13	47409635	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		47409635	67760243	32	62301										
CATSPER2	0	genome.wustl.edu	37	chr15	43927353	43927354	+	Splice_Site	INS	-	-	T													0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	aagatccttaacttaggatcINStttttttttttccaaataag							TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	15	43927353	43927354	-	T	INS	CATSPER2	ENST00000419262	human	ensembl	69_37n	-1	known	splice_site_ins	c.34-2_34-1	e2-1	0.001:0.002	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CATSPER2	HGNC	ENSG00000166762	19	0	0	27	3	10	-	-	-	T	43927354	-	T	43927353	8	5	710	1	0	1	1	0	0	0	1	0	2713	928	32	0		0	CATSPER2	15	43927353	Splice_Site	INS	-	TCGA-D8-A1XM-01A-21D-A14K-09		43927353	58604039	33	62302										
CILP	0	genome.wustl.edu	37	chr15	65496643	65496643	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gccttgatggtggctgccttCaggctagtcttgggcattgt	14	9	2	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	15	65496643	65496643	C	T	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	silent	c.882	p.L294	0.026	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	55	0	0	48	14	22.58	-	-	-	T	65496643	C	T	65496643	2	4	710	1	0	0	0	0	0	0	0	1	3458	813	29	2		2	CILP	15	65496643	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	21569290	65496643	37034749	34	62303										
ISLR	0	genome.wustl.edu	37	chr15	74468296	74468296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ccatggcaaagcggttgaggGaaagggctgctatacggttg	16	7	0	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	15	74468296	74468296	G	A	SNP	ISLR	ENST00000249842	human	ensembl	69_37n	1	known	missense	c.1097	p.G366E	0.962	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ISLR	HGNC	ENSG00000129009	64	0	0	36	9	20	-	-	-	A	74468296	G	A	74468296	3	1	710	1	0	0	0	0	1	0	0	0	7912	1174	41	2	1099	2	ISLR	15	74468296	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	8971653	74468296	28063096	35	62304										
SMG1	0	genome.wustl.edu	37	chr16	18839447	18839447	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	accgtgggggaggtgtgactGacatggcttgtggtctattg	17	6	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	16	18839447	18839447	G	T	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	nonsense	c.9650	p.S3217*	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	89	0	0	66	21	24.14	-	-	-	T	18839447	G	T	18839447	4	4	710	1	0	0	0	0	0	1	0	0	14884	1294	45	2	1374	2	SMG1	16	18839447	Nonsense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		18839447	71515306	36	62305										
GPR97	0	genome.wustl.edu	37	chr16	57710130	57710130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agatactggctaaactacgaGgcccatctgatgaaggaagg	12	8	1	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	16	57710130	57710130	G	A	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	silent	c.225	p.E75	0.385	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	65	0	0	40	6	13.04	-	-	-	A	57710130	G	A	57710130	2	1	710	1	0	0	0	0	0	0	0	1	6771	991	35	4		4	GPR97	16	57710130	Silent	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	38870683	57710130	32644623	37	62306										
MYO1C	0	genome.wustl.edu	37	chr17	1374587	1374587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agccaccccatcctgcggccGtcctgcccacgtgggccacg	11	20	0	0			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	1374587	1374587	G	A	SNP	MYO1C	ENST00000359786	human	ensembl	69_37n	-1	known	missense	c.2065	p.R689W	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879	27	0	0	6	8	57.14	-	-	-	A	1374587	G	A	1374587	3	1	710	1	0	0	0	0	1	0	0	0	10142	1144	40	1	1178	1	MYO1C	17	1374587	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09		1374587	79820623	38	62307										
ZBTB4	0	genome.wustl.edu	37	chr17	7370012	7370012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agcagggaacttggtgtctcCggctatgagggtgacgtcac	15	9	2	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	7370012	7370012	C	T	SNP	ZBTB4	ENST00000311403	human	ensembl	69_37n	-1	known	missense	c.109	p.G37R	0.992	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	52	0	0	27	20	42.55	-	-	-	T	7370012	C	T	7370012	3	4	710	1	0	0	0	0	1	0	0	0	17637	661	23	1	2940	1	ZBTB4	17	7370012	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	5995425	7370012	73825198	39	62308										
ERBB2	0	genome.wustl.edu	37	chr17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tccagtggccatcaaagtgtTgagggaaaacacatccccca	9	12	1	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	72	0	0	83	44	34.65	-	-	-	C	37880220	T	C	37880220	3	2	710	1	0	0	0	0	1	0	0	0	5243	1821	63	5	2338	5	ERBB2	17	37880220	Missense_Mutation	SNP	T	TCGA-D8-A1XM-01A-21D-A14K-09	30510208	37880220	43314990	40	62309										
MBTD1	0	genome.wustl.edu	37	chr17	49297759	49297761	+	In_Frame_Del	DEL	AGA	AGA	-													0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tcttgaacatgaaacgctacAgaaacgctttgttttagagt							TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	49297759	49297761	AGA	-	DEL	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	in_frame_del	c.220_218	p.F73in_frame_del	1.000:1.000:1.000	pfscan_Znf_FCS	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	118	0	0	66	55	44.72	-	-	-	-	49297761	AGA	-	49297759	7	5	710	1	0	1	0	1	0	0	0	0	9431	188	7	0	1722	0	MBTD1	17	49297759	In_Frame_Del	DEL	AGA	TCGA-D8-A1XM-01A-21D-A14K-09	11417539	49297759	31897451	41	62310										
GPR142	0	genome.wustl.edu	37	chr17	72366697	72366697	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	accctgctgcccacgccccaCgtcagcgggctgagccagga	12	18	1	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	72366697	72366697	C	T	SNP	GPR142	ENST00000335666	human	ensembl	69_37n	1	known	silent	c.396	p.H132	0.025	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008	58	0	0	57	29	33.33	-	-	-	T	72366697	C	T	72366697	2	4	710	1	0	0	0	0	0	0	0	1	6700	535	19	1		1	GPR142	17	72366697	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	23068938	72366697	8828513	42	62311										
ZFP14	0	genome.wustl.edu	37	chr19	36832278	36832278	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ttgtgccttttgtaagtggtCattttttcagaggtaatttt	9	4	2	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	19	36832278	36832278	C	T	SNP	ZFP14	ENST00000270001	human	ensembl	69_37n	-1	known	missense	c.450	p.M150I	0.009	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP14	HGNC	ENSG00000142065	73	0	0	52	20	27.78	-	-	-	T	36832278	C	T	36832278	3	4	710	1	0	0	0	0	1	0	0	0	17735	826	29	2	1155	2	ZFP14	19	36832278	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		36832278	22296705	43	62312										
CACNG7	0	genome.wustl.edu	37	chr19	54418757	54418757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tggcatcttcttcatactatCgggtgagcctaaggacttgg	11	9	3	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	19	54418757	54418757	C	T	SNP	CACNG7	ENST00000222212	human	ensembl	69_37n	1	known	missense	c.422	p.S141L	0.929	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605	102	0	0	68	25	26.88	-	-	-	T	54418757	C	T	54418757	3	4	710	1	0	0	0	0	1	0	0	0	2587	893	31	1	432	1	CACNG7	19	54418757	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	17586479	54418757	4710226	44	62313										
EP300	0	genome.wustl.edu	37	chr22	41545883	41545883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tcttcatcagaattcaccctCgcctgtacctagtcgtaccc	5	16	4	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	22	41545883	41545883	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.2498	p.S833L	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	46	0	0	30	17	36.17	-	-	-	T	41545883	C	T	41545883	3	4	710	1	0	0	0	0	1	0	0	0	5185	893	31	1	2552	1	EP300	22	41545883	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		41545883	9758683	45	62314										
MXRA5	0	genome.wustl.edu	37	chrX	3238221	3238221	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ggaggtcctcctgcaaagaaCtttgagctgctctggtggaa	13	9	1	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	3238221	3238221	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.5505	p.K1835N	0.234	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	66	0	0	59	23	28.05	-	-	-	A	3238221	C	A	3238221	3	1	710	1	0	0	0	0	1	0	0	0	10075	564	20	4	2993	4	MXRA5	23	3238221	Missense_Mutation	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09		3238221	152032339	46	62315										
NLGN4X	0	genome.wustl.edu	37	chrX	5811184	5811184	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	tctctggggactggggcgccTgtgagtctcatggcgcctct	15	12	3	1			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	5811184	5811184	T	A	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.2185	p.R729W	0.452	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	135	0	0	75	34	31.19	-	-	-	A	5811184	T	A	5811184	3	1	710	1	0	0	0	0	1	0	0	0	10536	1579	55	5	329	5	NLGN4X	23	5811184	Missense_Mutation	SNP	T	TCGA-D8-A1XM-01A-21D-A14K-09	2572963	5811184	149459376	47	62316										
ZMYM3	0	genome.wustl.edu	37	chrX	70462884	70462884	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	agttcttgaacaaaagtcagGtagtaaaggtccgtgaaaat	10	5	2	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	70462884	70462884	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	silent	c.3489	p.Y1163	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	151	1	0.66	119	27	18.37	-	-	-	A	70462884	G	A	70462884	2	1	710	1	0	0	0	0	0	0	0	1	17797	1256	44	4		4	ZMYM3	23	70462884	Silent	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	64651700	70462884	84807676	48	62317										
RPS4X	0	genome.wustl.edu	37	chrX	71494957	71494957	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	aagcgacccttggtgtcataGatcagacggaaattctctcc	9	11	3	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	71494957	71494957	G	C	SNP	RPS4X	ENST00000316084	human	ensembl	69_37n	-1	known	missense	c.306	p.I102M	1.000	pfam_Ribosomal_S4e_central,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034	120	0	0	77	29	27.36	-	-	-	C	71494957	G	C	71494957	3	2	710	1	0	0	0	0	1	0	0	0	13731	932	33	2	501	2	RPS4X	23	71494957	Missense_Mutation	SNP	G	TCGA-D8-A1XM-01A-21D-A14K-09	1032073	71494957	83775603	49	62318										
DIAPH2	0	genome.wustl.edu	37	chrX	96185793	96185793	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	ttatgagcttgattttcgaaTacatttaaggaatgaattcc	7	5	0	3			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	96185793	96185793	T	A	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.1040	p.I347K	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	126	0	0	83	42	33.6	-	-	-	A	96185793	T	A	96185793	3	1	710	1	0	0	0	0	1	0	0	0	4555	1406	49	5	1078	5	DIAPH2	23	96185793	Missense_Mutation	SNP	T	TCGA-D8-A1XM-01A-21D-A14K-09	24690836	96185793	59084767	50	62319										
F8	0	genome.wustl.edu	37	chrX	154182270	154182270	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.294117647058824	15	0.00145368224296016	2.70356343604751	6.6687898089172	2.3536905207943	0.00791169367365138	0.114145658263305	9	gtgaggtaccagcttcggttCtcatcaaatacagaaaacag	9	9	2	2			TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	154182270	154182270	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.1800	p.E600	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	103	0	0	69	28	28.87	-	-	-	T	154182270	C	T	154182270	2	4	710	1	0	0	0	0	0	0	0	1	5387	912	32	2		2	F8	23	154182270	Silent	SNP	C	TCGA-D8-A1XM-01A-21D-A14K-09	57996477	154182270	1088290	51	62320										
ITGB3BP	0	genome.wustl.edu	37	chr1	63920077	63920077	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ctttggttttctgcatttctCtttttaagaaatgtgatgca	7	6	2	2			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	63920077	63920077	C	G	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	missense	c.518	p.R173T	0.995	pfam_NRIF3_coact_rcpt	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	140	1	0.71	115	35	23.33	-	-	-	G	63920077	C	G	63920077	3	3	711	1	0	0	0	0	1	0	0	0	7950	913	32	2	144	2	ITGB3BP	1	63920077	Missense_Mutation	SNP	C	TCGA-D8-A1XO-01A-11D-A14K-09		63920077	185330544	1	62321										
MCL1	0	genome.wustl.edu	37	chr1	150551359	150551359	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ttgcgctgcacgccatccccAacccgtcgtaaggtctccag	9	17	1	0			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	150551359	150551359	A	T	SNP	MCL1	ENST00000369026	human	ensembl	69_37n	-1	known	silent	c.648	p.V216	0.600	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Apop_reg_Mc1,prints_Bcl2_BH	-	no_errors	MCL1	HGNC	ENSG00000143384	24	0	0	26	9	25.71	-	-	-	T	150551359	A	T	150551359	2	4	711	1	0	0	0	0	0	0	0	1	9455	117	5	5		5	MCL1	1	150551359	Silent	SNP	A	TCGA-D8-A1XO-01A-11D-A14K-09	86631282	150551359	98699262	2	62322										
OR2T34	0	genome.wustl.edu	37	chr1	248737167	248737167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	cctggtgacatctttgttgcGgagactgtaaatgagggggt	15	6	1	3			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	1	248737167	248737167	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.892	p.R298C	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	26	0	0	37	10	21.28	-	-	-	A	248737167	G	A	248737167	3	1	711	1	0	0	0	0	1	0	0	0	11098	1116	39	1	68	1	OR2T34	1	248737167	Missense_Mutation	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09	98185808	248737167	513454	3	62323										
PPM1B	0	genome.wustl.edu	37	chr2	44429052	44429052	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	gcagaagaggatgaatttatCatcttggcttgtgatgggat	13	4	2	4			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	2	44429052	44429052	C	T	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	1	known	silent	c.714	p.I238	0.985	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	75	0	0	83	28	25.23	-	-	-	T	44429052	C	T	44429052	2	4	711	1	0	0	0	0	0	0	0	1	12413	816	29	2		2	PPM1B	2	44429052	Silent	SNP	C	TCGA-D8-A1XO-01A-11D-A14K-09		44429052	198770321	4	62324										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0	55	33	37.5	-	-	-	A	178936082	G	A	178936082	3	1	711	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09		178936082	19086348	5	62325										
FAT2	0	genome.wustl.edu	37	chr5	150924228	150924228	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	aagtacctcttcctcactctGgagggatggcgttcctccat	9	13	3	0			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	5	150924228	150924228	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	nonsense	c.6460	p.Q2154*	0.020	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	22	0	0	22	11	33.33	-	-	-	A	150924228	G	A	150924228	4	1	711	1	0	0	0	0	0	1	0	0	5736	1357	47	4	6649	4	FAT2	5	150924228	Nonsense_Mutation	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09		150924228	29991032	6	62326										
STK31	0	genome.wustl.edu	37	chr7	23792363	23792363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	aggcagctgctgtggatttgActaaccacttagaatacact	9	9	0	2			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	7	23792363	23792363	A	G	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.1045	p.T349A	0.999	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	80	0	0	75	32	29.91	-	-	-	G	23792363	A	G	23792363	3	3	711	1	0	0	0	0	1	0	0	0	15387	275	10	5	1079	5	STK31	7	23792363	Missense_Mutation	SNP	A	TCGA-D8-A1XO-01A-11D-A14K-09		23792363	135346300	7	62327										
MLL5	0	genome.wustl.edu	37	chr7	104719345	104719345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ttcatgggctagaaatgtgtGttgatgcaaggacttttggg	14	4	1	2			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	7	104719345	104719345	G	T	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.1183	p.V395F	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	156	0	0	160	75	31.91	-	-	-	T	104719345	G	T	104719345	3	4	711	1	0	0	0	0	1	0	0	0	9695	1377	48	4	1221	4	MLL5	7	104719345	Missense_Mutation	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09	80926982	104719345	54419318	8	62328										
KCNMA1	0	genome.wustl.edu	37	chr10	78943191	78943191	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	tgacttaccaagccaacttcTgtttaagtacacagacacaa	5	11	1	2			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	10	78943191	78943191	T	A	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	nonsense	c.796	p.R266*	1.000	pfam_Ion_trans_dom	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	29	0	0	28	11	28.21	-	-	-	A	78943191	T	A	78943191	4	1	711	1	0	0	0	0	0	1	0	0	8127	1588	55	5	3182	5	KCNMA1	10	78943191	Nonsense_Mutation	SNP	T	TCGA-D8-A1XO-01A-11D-A14K-09		78943191	56591556	9	62329										
ATM	0	genome.wustl.edu	37	chr11	108121488	108121488	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	agtttacctaactgtgagctGtctccattactgatgatact	7	9	1	3			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	11	108121488	108121488	G	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	silent	c.1296	p.L432	0.015	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	29	0	0	24	11	31.43	-	-	-	T	108121488	G	T	108121488	2	4	711	1	0	0	0	0	0	0	0	1	1113	1364	48	4		4	ATM	11	108121488	Silent	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09		108121488	26885028	10	62330										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	29	0	0	7	10	58.82	-	-	-	T	68772218	C	T	68772218	4	4	711	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-D8-A1XO-01A-11D-A14K-09		68772218	21582535	11	62331										
ZFHX3	0	genome.wustl.edu	37	chr16	72832413	72832413	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	gcgatctgacaccggcagctGaggcctcttggcatgcactt	12	13	2	2			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	16	72832413	72832413	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.4168	p.Q1390*	1.000	pfscan_Znf_C2H2	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	100	0	0	40	51	56.04	-	-	-	A	72832413	G	A	72832413	4	1	711	1	0	0	0	0	0	1	0	0	17730	1299	45	2	6951	2	ZFHX3	16	72832413	Nonsense_Mutation	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09	4060195	72832413	17522340	12	62332										
SAT2	0	genome.wustl.edu	37	chr17	7531048	7531048	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	acttggatcctgaagagcctGagagagcggggtggcgggag	19	7	0	4			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	17	7531048	7531048	G	A	SNP	SAT2	ENST00000380466	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAT2	HGNC	ENSG00000141504	11	0	0	5	7	58.33	-	-	-	A	7531048	G	A	7531048	1	1	711	0	1	0	0	0	0	0	0	0	13939	1305	45	2		2	SAT2	17	7531048	RNA	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09		7531048	73664162	13	62333										
FKBP8	0	genome.wustl.edu	37	chr19	18650372	18650372	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	agcccgcacctggatgacgtCacagtcacccagagtgaaca	10	14	2	3			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	19	18650372	18650372	C	A	SNP	FKBP8	ENST00000453489	human	ensembl	69_37n	-1	known	missense	c.538	p.D180Y	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701	13	0	0	14	8	36.36	-	-	-	A	18650372	C	A	18650372	3	1	711	1	0	0	0	0	1	0	0	0	5960	826	29	2	818	2	FKBP8	19	18650372	Missense_Mutation	SNP	C	TCGA-D8-A1XO-01A-11D-A14K-09		18650372	40478611	14	62334										
NPHS1	0	genome.wustl.edu	37	chr19	36321761	36321761	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ctcaccatctgcacttcatcGtagaggggtccccaggctcc	9	16	3	1			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	19	36321761	36321761	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	silent	c.3579	p.Y1193	0.121	NULL	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	46	0	0	50	12	19.35	-	-	-	A	36321761	G	A	36321761	2	1	711	1	0	0	0	0	0	0	0	1	10654	1140	40	1		1	NPHS1	19	36321761	Silent	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09	17671389	36321761	22807222	15	62335										
RNF215	0	genome.wustl.edu	37	chr22	30775744	30775744	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	ggcaggtctgctggagcatcAgccaggggtccacacagtct	14	12	3	0			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	22	30775744	30775744	A	T	SNP	RNF215	ENST00000382363	human	ensembl	69_37n	-1	known	missense	c.1067	p.L356Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999	48	0	0	26	21	44.68	-	-	-	T	30775744	A	T	30775744	3	4	711	1	0	0	0	0	1	0	0	0	13565	188	7	5	74	5	RNF215	22	30775744	Missense_Mutation	SNP	A	TCGA-D8-A1XO-01A-11D-A14K-09		30775744	20528822	16	62336										
AR	0	genome.wustl.edu	37	chrX	66765081	66765081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	aatctgttccagagcgtgcgCgaagtgatccagaacccggg	13	11	1	3			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	X	66765081	66765081	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	silent	c.93	p.R31	1.000	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	31	0	0	27	9	25	-	-	-	T	66765081	C	T	66765081	2	4	711	1	0	0	0	0	0	0	0	1	838	755	27	1		1	AR	23	66765081	Silent	SNP	C	TCGA-D8-A1XO-01A-11D-A14K-09		66765081	88505479	17	62337										
NXF5	0	genome.wustl.edu	37	chrX	101096721	101096721	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	6	0.0283932494990558	3.23076923076923	5.92307692307692	2.96153846153846	0.102564102564103	0.5224358974359	4	gcactagcaacctggacaaaGaagcatgcccgatttcggat	10	11	0	1			TCGA-D8-A1XO-01A-11D-A14K-09	TCGA-D8-A1XO-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5ff68a2-da74-4608-941e-dbac40153077	19f00cd8-b25b-4b38-a55d-b6360c693945	X	101096721	101096721	G	A	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	silent	c.165	p.F55	0.987	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	170	0	0	143	48	25	-	-	-	A	101096721	G	A	101096721	2	1	711	1	0	0	0	0	0	0	0	1	10859	933	33	2		2	NXF5	23	101096721	Silent	SNP	G	TCGA-D8-A1XO-01A-11D-A14K-09	34331640	101096721	54173839	18	62338										
CPSF3L	0	genome.wustl.edu	37	chr1	1249259	1249259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggttggccttctcggtcagCcccgtggagaagtagatggg	16	9	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	1249259	1249259	C	T	SNP	CPSF3L	ENST00000528879	human	ensembl	69_37n	-1	known	missense	c.745	p.A249T	0.995	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054	100	0	0	58	18	23.38	-	-	-	T	1249259	C	T	1249259	3	4	712	1	0	0	0	0	1	0	0	0	3857	726	26	4	1028	4	CPSF3L	1	1249259	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		1249259	248001362	1	62339										
TPRG1L	0	genome.wustl.edu	37	chr1	3545009	3545009	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctctgttaatccaagctgtcAaaaaagcccaaaaagaaagc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	3545009	3545009	A	-	DEL	TPRG1L	ENST00000378344	human	ensembl	69_37n	1	known	frame_shift_del	c.661	p.A223fs	1.000	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1L	HGNC	ENSG00000158109	118	0	0	81	14	14.74	-	-	-	-	3545009	A	-	3545009	7	5	712	1	0	1	0	1	0	0	0	0	16515	131	5	0	679	0	TPRG1L	1	3545009	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2295750	3545009	245705612	2	62340										
MTHFR	0	genome.wustl.edu	37	chr1	11852409	11852409	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagaagtgcttccgctgtctCgcgggaagtgaaaaactcta	11	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	11852409	11852409	C	G	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.1681	p.E561Q	0.999	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	44	0	0	34	6	15	-	-	-	G	11852409	C	G	11852409	3	3	712	1	0	0	0	0	1	0	0	0	10003	893	31	3	424	3	MTHFR	1	11852409	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8307400	11852409	237398212	3	62341										
MTHFR	0	genome.wustl.edu	37	chr1	11854032	11854032	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaggacggcttcccgttgaTgttgggctgtgagttgatgg	18	6	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	11854032	11854032	T	C	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.1585	p.I529V	1.000	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	53	0	0	40	11	21.57	-	-	-	C	11854032	T	C	11854032	3	2	712	1	0	0	0	0	1	0	0	0	10003	1464	51	5	524	5	MTHFR	1	11854032	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1623	11854032	237396589	4	62342										
PRDM2	0	genome.wustl.edu	37	chr1	14109029	14109029	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaggaactccagcccgataaGaatggccaaaataactcatg	8	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	14109029	14109029	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.4739	p.R1580K	0.996	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	48	0	0	45	14	23.73	-	-	-	A	14109029	G	A	14109029	3	1	712	1	0	0	0	0	1	0	0	0	12539	942	33	2	4765	2	PRDM2	1	14109029	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2254997	14109029	235141592	5	62343										
PLA2G2F	0	genome.wustl.edu	37	chr1	20471184	20471184	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacactgagatagtctgcagTgagtccctcccctgtcacct	8	14	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	20471184	20471184	T	C	SNP	PLA2G2F	ENST00000375102	human	ensembl	69_37n	1	known	splice_site	c.424+2	e4+2	1.000	-	-	-	no_errors	PLA2G2F	HGNC	ENSG00000158786	52	0	0	28	8	22.22	-	-	-	C	20471184	T	C	20471184	5	2	712	1	0	0	0	0	0	0	1	0	12073	1710	59	5	440	5	PLA2G2F	1	20471184	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	6362155	20471184	228779437	6	62344										
HSPG2	0	genome.wustl.edu	37	chr1	22174272	22174272	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acgcagttcagatccaaggtCtgcccttccaccaccgtggg	10	15	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	22174272	22174272	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.7935	p.Q2645	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	40	0	0	29	7	19.44	-	-	-	T	22174272	C	T	22174272	2	4	712	1	0	0	0	0	0	0	0	1	7484	912	32	2		2	HSPG2	1	22174272	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1703088	22174272	227076349	7	62345										
WDTC1	0	genome.wustl.edu	37	chr1	27624574	27624574	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgccatgctttatggaaacCgagcagcagcctacatgaag	10	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	27624574	27624574	C	T	SNP	WDTC1	ENST00000319394	human	ensembl	69_37n	1	known	nonsense	c.1204	p.R402*	1.000	superfamily_WD40_repeat_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784	65	0	0	52	13	20	-	-	-	T	27624574	C	T	27624574	4	4	712	1	0	0	0	0	0	1	0	0	17439	644	23	1	1243	1	WDTC1	1	27624574	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5450302	27624574	221626047	8	62346										
KIAA0319L	0	genome.wustl.edu	37	chr1	35972480	35972480	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaatcatctgcagtttggaaTttttttaaaaacaccagcat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	35972480	35972480	T	-	DEL	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	frame_shift_del	c.399	p.K133fs	0.034	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	61	0	0	52	6	10.34	-	-	-	-	35972480	T	-	35972480	7	5	712	1	0	1	0	1	0	0	0	0	8221	1490	52	0	2826	0	KIAA0319L	1	35972480	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	8347906	35972480	213278141	9	62347										
TFAP2E	0	genome.wustl.edu	37	chr1	36055628	36055628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcaaggccgccaatgtgacgCtgctgacttcgctagtggaa	13	11	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	36055628	36055628	C	T	SNP	TFAP2E	ENST00000373235	human	ensembl	69_37n	1	known	silent	c.883	p.L295	0.816	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2E	HGNC	ENSG00000116819	109	0	0	108	23	17.56	-	-	-	T	36055628	C	T	36055628	2	4	712	1	0	0	0	0	0	0	0	1	15886	796	28	4		4	TFAP2E	1	36055628	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	83148	36055628	213194993	10	62348										
CLSPN	0	genome.wustl.edu	37	chr1	36229911	36229911	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tagctgtctaattttttccaTttttctctcctctttctcaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	36229911	36229911	T	-	DEL	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	frame_shift_del	c.538	p.M180fs	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	298	0	0	222	47	17.03	-	-	-	-	36229911	T	-	36229911	7	5	712	1	0	1	0	1	0	0	0	0	3590	1493	52	0	3573	0	CLSPN	1	36229911	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	174283	36229911	213020710	11	62349										
EIF2C3	0	genome.wustl.edu	37	chr1	36520695	36520695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcaccagcgtattatgctcAcctggtagcatttagagcca	9	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	36520695	36520695	A	G	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	1	known	missense	c.2423	p.H808R	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	134	0	0	124	24	16.22	-	-	-	G	36520695	A	G	36520695	3	3	712	1	0	0	0	0	1	0	0	0	5042	159	6	5	2493	5	EIF2C3	1	36520695	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	290784	36520695	212729926	12	62350										
CSF3R	0	genome.wustl.edu	37	chr1	36939169	36939169	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcagtggctctgcccgtcCttgggcacgcagtccaggat	13	14	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	36939169	36939169	C	A	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.540	p.K180N	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	61	0	0	42	11	20.75	-	-	-	A	36939169	C	A	36939169	3	1	712	1	0	0	0	0	1	0	0	0	3969	680	24	4	2208	4	CSF3R	1	36939169	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	418474	36939169	212311452	13	62351										
INPP5B	0	genome.wustl.edu	37	chr1	38343876	38343876	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctaccccgatgtcaaacactGagctgacaggcttgtggtca	10	12	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	38343876	38343876	G	T	SNP	INPP5B	ENST00000373023	human	ensembl	69_37n	-1	known	nonsense	c.1901	p.S634*	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	INPP5B	HGNC	ENSG00000204084	86	0	0	66	19	22.35	-	-	-	T	38343876	G	T	38343876	4	4	712	1	0	0	0	0	0	1	0	0	7809	1294	45	2	1116	2	INPP5B	1	38343876	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1404707	38343876	210906745	14	62352										
FHL3	0	genome.wustl.edu	37	chr1	38463195	38463195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcagttgtggtgccagtgtCggtcttcaaaggacacatac	12	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	38463195	38463195	C	T	SNP	FHL3	ENST00000373016	human	ensembl	69_37n	-1	known	missense	c.725	p.R242Q	0.997	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL3	HGNC	ENSG00000183386	72	0	0	75	17	18.48	-	-	-	T	38463195	C	T	38463195	3	4	712	1	0	0	0	0	1	0	0	0	5926	884	31	1	121	1	FHL3	1	38463195	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	119319	38463195	210787426	15	62353										
RLF	0	genome.wustl.edu	37	chr1	40701830	40701830	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gccaccaacttttaggacaaGaagcctcagattctgatgat	8	10	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	40701830	40701830	G	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	nonsense	c.1456	p.E486*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	34	0	0	23	4	14.29	-	-	-	T	40701830	G	T	40701830	4	4	712	1	0	0	0	0	0	1	0	0	13475	943	33	2	1486	2	RLF	1	40701830	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2238635	40701830	208548791	16	62354										
IPO13	0	genome.wustl.edu	37	chr1	44415402	44415402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actggcctcactggctctcaGcatgatgcctgacgcttggc	11	14	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	44415402	44415402	G	A	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	missense	c.398	p.S133N	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	43	0	0	35	12	25.53	-	-	-	A	44415402	G	A	44415402	3	1	712	1	0	0	0	0	1	0	0	0	7848	971	34	4	404	4	IPO13	1	44415402	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3713572	44415402	204835219	17	62355										
DPH2	0	genome.wustl.edu	37	chr1	44437174	44437174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgcccctagagcgttttggGcgccgcttcccccttgcccc	10	18	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	44437174	44437174	G	A	SNP	DPH2	ENST00000524776	human	ensembl	69_37n	1	known	missense	c.376	p.A126T	1.000	NULL	tigrfam_DPH1/DPH2	-	no_errors	DPH2	HGNC	ENSG00000132768	60	0	0	49	15	23.44	-	-	-	A	44437174	G	A	44437174	3	1	712	1	0	0	0	0	1	0	0	0	4755	1190	42	4	614	4	DPH2	1	44437174	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	21772	44437174	204813447	18	62356										
SLC6A9	0	genome.wustl.edu	37	chr1	44474088	44474088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagcaggtgggagaggttgCtgggcaaggcggctggccga	21	7	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	44474088	44474088	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.746	p.S249N	0.444	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	136	0	0	115	18	13.43	-	-	-	T	44474088	C	T	44474088	3	4	712	1	0	0	0	0	1	0	0	0	14780	797	28	4	1414	4	SLC6A9	1	44474088	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	36914	44474088	204776533	19	62357										
PDZK1IP1	0	genome.wustl.edu	37	chr1	47653030	47653030	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtggttgactgcaaaggcgAttgcaacgaggaccaggaac	14	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	47653030	47653030	A	G	SNP	PDZK1IP1	ENST00000294338	human	ensembl	69_37n	-1	known	missense	c.137	p.I46T	0.654	NULL	NULL	-	no_errors	PDZK1IP1	HGNC	ENSG00000162366	30	0	0	33	7	17.07	-	-	-	G	47653030	A	G	47653030	3	3	712	1	0	0	0	0	1	0	0	0	11781	333	12	5	219	5	PDZK1IP1	1	47653030	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3178942	47653030	201597591	20	62358										
SPATA6	0	genome.wustl.edu	37	chr1	48821396	48821396	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagacattttttacccggtcAtggatctcatcgcagtttga	8	9	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	48821396	48821396	A	G	SNP	SPATA6	ENST00000371847	human	ensembl	69_37n	-1	known	silent	c.1140	p.H380	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122	158	0	0	133	24	15.29	-	-	-	G	48821396	A	G	48821396	2	3	712	1	0	0	0	0	0	0	0	1	15104	214	8	5		5	SPATA6	1	48821396	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1168366	48821396	200429225	21	62359										
NRD1	0	genome.wustl.edu	37	chr1	52344171	52344172	+	Frame_Shift_Del	DEL	AG	AG	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaaagggtctggcagcagcAgagtcttcgcaccgaccccg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	52344171	52344172	AG	-	DEL	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	frame_shift_del	c.117_116	p.S39fs	0.786:0.820	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	NRD1	HGNC	ENSG00000078618	27	0	0	36	10	21.74	-	-	-	-	52344172	AG	-	52344171	7	5	712	1	0	1	0	1	0	0	0	0	10718	175	7	0	3674	0	NRD1	1	52344171	Frame_Shift_Del	DEL	AG	TCGA-D8-A1XQ-01A-11D-A14K-09	3522775	52344171	196906450	22	62360										
FAM151A	0	genome.wustl.edu	37	chr1	55085649	55085649	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcaggtagtccagcatgtcGgcatcagggctgcaggcctc	14	12	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	55085649	55085649	G	T	SNP	FAM151A	ENST00000302250	human	ensembl	69_37n	-1	known	silent	c.150	p.A50	0.041	NULL	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	74	0	0	42	16	27.59	-	-	-	T	55085649	G	T	55085649	2	4	712	1	0	0	0	0	0	0	0	1	5498	1103	39	3		3	FAM151A	1	55085649	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2741478	55085649	194164972	23	62361										
C8B	0	genome.wustl.edu	37	chr1	57409414	57409414	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcatttgcctacagacacacCcagactgacgtagacctctt	7	14	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	57409414	57409414	C	A	SNP	C8B	ENST00000371237	human	ensembl	69_37n	-1	known	missense	c.1189	p.G397C	0.958	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852	236	0	0	131	28	17.61	-	-	-	A	57409414	C	A	57409414	3	1	712	1	0	0	0	0	1	0	0	0	2440	623	22	4	606	4	C8B	1	57409414	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2323765	57409414	191841207	24	62362										
PDE4B	0	genome.wustl.edu	37	chr1	66834548	66834548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtatcggcaatggacagacCgcatcatggaggaatttttc	11	8	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	66834548	66834548	C	T	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	missense	c.1741	p.R581C	1.000	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	58	0	0	75	10	11.76	-	-	-	T	66834548	C	T	66834548	3	4	712	1	0	0	0	0	1	0	0	0	11713	652	23	1	2157	1	PDE4B	1	66834548	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	9425134	66834548	182416073	25	62363										
LRRIQ3	0	genome.wustl.edu	37	chr1	74575160	74575160	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagcttatcttcataccctTtggttatgtaaatccatttt	6	8	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	74575160	74575160	T	A	SNP	LRRIQ3	ENST00000354431	human	ensembl	69_37n	-1	known	missense	c.785	p.K262I	0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620	277	0	0	181	45	19.91	-	-	-	A	74575160	T	A	74575160	3	1	712	1	0	0	0	0	1	0	0	0	9096	1841	64	5	1105	5	LRRIQ3	1	74575160	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	7740612	74575160	174675461	26	62364										
ASB17	0	genome.wustl.edu	37	chr1	76387846	76387847	+	Frame_Shift_Ins	INS	-	-	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	catcttcatggatgtcagccINSaattcacgatcaaccattac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	76387846	76387847	-	A	INS	ASB17	ENST00000284142	human	ensembl	69_37n	-1	known	frame_shift_ins	c.600_599	p.L200fs	1.000:0.999	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007	112	0	0	93	11	10.58	-	-	-	A	76387847	-	A	76387846	7	5	712	1	0	1	1	0	0	0	0	0	1025	593	21	0	295	0	ASB17	1	76387846	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	1812686	76387846	172862775	27	62365										
NEXN	0	genome.wustl.edu	37	chr1	78392424	78392424	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gatgaaatagaaagtgaagcAaaaaaagaatcactttctcc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	78392424	78392424	A	-	DEL	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	frame_shift_del	c.711	p.E240fs	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	62	0	0	32	11	25.58	-	-	-	-	78392424	A	-	78392424	7	5	712	1	0	1	0	1	0	0	0	0	10427	117	5	0	737	0	NEXN	1	78392424	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2004578	78392424	170858197	28	62366										
SPATA1	0	genome.wustl.edu	37	chr1	84986376	84986376	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttcagctggatttctaaggCaagtgttgtgtagtcatgta	11	5	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	84986376	84986376	C	T	SNP	SPATA1	ENST00000370638	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	116	0	0	73	16	17.98	-	-	-	T	84986376	C	T	84986376	5	4	712	1	0	0	0	0	0	0	1	0	15089	724	25	4	217	4	SPATA1	1	84986376	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	6593952	84986376	164264245	29	62367										
MCOLN3	0	genome.wustl.edu	37	chr1	85499890	85499890	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gattgcttggtacctttgttCtcataagcatgattcccaac	7	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	85499890	85499890	C	A	SNP	MCOLN3	ENST00000302814	human	ensembl	69_37n	-1	known	missense	c.441	p.E147D	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732	140	0	0	103	17	14.17	-	-	-	A	85499890	C	A	85499890	3	1	712	1	0	0	0	0	1	0	0	0	9468	912	32	2	1260	2	MCOLN3	1	85499890	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	513514	85499890	163750731	30	62368										
CLCA2	0	genome.wustl.edu	37	chr1	86894111	86894111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttaatttaggcaaatgtcaTagtgactgactggtatgggg	12	4	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	86894111	86894111	T	C	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	1	known	missense	c.335	p.I112T	0.994	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	85	0	0	84	16	16	-	-	-	C	86894111	T	C	86894111	3	2	712	1	0	0	0	0	1	0	0	0	3488	1406	49	5	345	5	CLCA2	1	86894111	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1394221	86894111	162356510	31	62369										
GBP3	0	genome.wustl.edu	37	chr1	89479814	89479814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtactcatctggtgtgagggGttgtccatctgcttccaagt	12	9	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	89479814	89479814	G	T	SNP	GBP3	ENST00000370481	human	ensembl	69_37n	-1	known	missense	c.577	p.P193T	0.000	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP3	HGNC	ENSG00000117226	157	0	0	95	18	15.79	-	-	-	T	89479814	G	T	89479814	3	4	712	1	0	0	0	0	1	0	0	0	6325	1261	44	4	1238	4	GBP3	1	89479814	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2585703	89479814	159770807	32	62370										
LRRC8D	0	genome.wustl.edu	37	chr1	90400731	90400731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgttactattcctccctctAttacccatgtcaaaaacttg	3	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	90400731	90400731	A	G	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	1	known	missense	c.2104	p.I702V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	59	0	0	45	9	16.67	-	-	-	G	90400731	A	G	90400731	3	3	712	1	0	0	0	0	1	0	0	0	9090	449	16	5	2106	5	LRRC8D	1	90400731	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	920917	90400731	158849890	33	62371										
LPPR5	0	genome.wustl.edu	37	chr1	99422292	99422292	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagacagcagtttctccaacTattatcttgaaagaaaataa	5	7	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	99422292	99422292	T	C	SNP	LPPR5	ENST00000263177	human	ensembl	69_37n	-1	known	missense	c.243	p.I81M	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Clone_based_vega_gene	ENSG00000117598	73	0	0	67	13	16.25	-	-	-	C	99422292	T	C	99422292	3	2	712	1	0	0	0	0	1	0	0	0	8994	1512	53	5	742	5	LPPR5	1	99422292	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9021561	99422292	149828329	34	62372										
LPPR4	0	genome.wustl.edu	37	chr1	99767348	99767348	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctcttggtcttcacatttatCatctgtggaataatctgcgg	8	9	6	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	99767348	99767348	C	A	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	silent	c.861	p.I287	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	192	0	0	144	28	16.28	-	-	-	A	99767348	C	A	99767348	2	1	712	1	0	0	0	0	0	0	0	1	8993	816	29	2		2	LPPR4	1	99767348	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	345056	99767348	149483273	35	62373										
CELSR2	0	genome.wustl.edu	37	chr1	109794904	109794904	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcaccacggtggtgctgatcAgcgccacggatgaggacaca	14	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	109794904	109794904	A	G	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.2203	p.S735G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	32	0	0	20	7	25.93	-	-	-	G	109794904	A	G	109794904	3	3	712	1	0	0	0	0	1	0	0	0	3251	188	7	5	2205	5	CELSR2	1	109794904	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10027556	109794904	139455717	36	62374										
CHI3L2	0	genome.wustl.edu	37	chr1	111784919	111784919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgacatggatgacttcactgGcaaatcctgcaaccagggcc	10	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	111784919	111784919	G	A	SNP	CHI3L2	ENST00000369748	human	ensembl	69_37n	1	known	missense	c.1106	p.G369D	0.800	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L2	HGNC	ENSG00000064886	86	0	0	56	14	20	-	-	-	A	111784919	G	A	111784919	3	1	712	1	0	0	0	0	1	0	0	0	3370	1203	42	4	1144	4	CHI3L2	1	111784919	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1990015	111784919	137465702	37	62375										
SYT6	0	genome.wustl.edu	37	chr1	114646335	114646335	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacatgatctctcccaagtcCacgctttcctgcaaagaagc	6	14	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	114646335	114646335	C	A	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	silent	c.1080	p.V360	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	48	0	0	36	9	20	-	-	-	A	114646335	C	A	114646335	2	1	712	1	0	0	0	0	0	0	0	1	15570	581	21	4		4	SYT6	1	114646335	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2861416	114646335	134604286	38	62376										
ATP1A1	0	genome.wustl.edu	37	chr1	116926693	116926693	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacaaggtgataaaaagggcAaaaagggcaaaaaagacagg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	116926693	116926693	A	-	DEL	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	frame_shift_del	c.70	p.K25fs	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	98	0	0	64	20	23.81	-	-	-	-	116926693	A	-	116926693	7	5	712	1	0	1	0	1	0	0	0	0	1132	131	5	0	92	0	ATP1A1	1	116926693	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2280358	116926693	132323928	39	62377										
IGSF3	0	genome.wustl.edu	37	chr1	117142951	117142951	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtgtccgggagatggctgtGactgcgaagcccatttctgg	16	9	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	117142951	117142951	G	T	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	silent	c.1701	p.V567	1.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	39	0	0	45	7	13.46	-	-	-	T	117142951	G	T	117142951	2	4	712	1	0	0	0	0	0	0	0	1	7655	1277	45	2		2	IGSF3	1	117142951	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	216258	117142951	132107670	40	62378										
SPAG17	0	genome.wustl.edu	37	chr1	118574360	118574360	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcttcttctttaagggattcTttgggtttttctttgccttt	7	7	5	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	118574360	118574360	T	G	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.3564	p.K1188N	0.967	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	353	0	0	387	100	20.53	-	-	-	G	118574360	T	G	118574360	3	3	712	1	0	0	0	0	1	0	0	0	15070	1606	56	5	3203	5	SPAG17	1	118574360	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1431409	118574360	130676261	41	62379										
MTMR11	0	genome.wustl.edu	37	chr1	149901062	149901062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgcctttgagaatgccagCaatttcagtgggattgagaa	11	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	149901062	149901062	C	T	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.2089	p.A697T	0.001	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	205	0	0	274	341	55	-	-	-	T	149901062	C	T	149901062	3	4	712	1	0	0	0	0	1	0	0	0	10012	710	25	4	83	4	MTMR11	1	149901062	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	31326702	149901062	99349559	42	62380										
ADAMTSL4	0	genome.wustl.edu	37	chr1	150531819	150531819	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gacatcatctgtgtatccaaActggggacggagttcaacgt	11	9	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	150531819	150531819	A	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	69_37n	1	known	missense	c.2889	p.K963N	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	42	0	0	63	119	65.38	-	-	-	T	150531819	A	T	150531819	3	4	712	1	0	0	0	0	1	0	0	0	277	40	2	5	2953	5	ADAMTSL4	1	150531819	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	630757	150531819	98718802	43	62381										
ARNT	0	genome.wustl.edu	37	chr1	150799086	150799086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attctacaatattctttcctAagagttcctagaatacagaa	4	8	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	150799086	150799086	A	G	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	missense	c.1175	p.L392S	1.000	pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	67	0	0	50	140	73.68	-	-	-	G	150799086	A	G	150799086	3	3	712	1	0	0	0	0	1	0	0	0	969	372	13	5	1234	5	ARNT	1	150799086	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	267267	150799086	98451535	44	62382										
TCHH	0	genome.wustl.edu	37	chr1	152082115	152082115	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gatactgcctctcccgctccTggcgccttttctcctgttcc	7	18	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	152082115	152082115	T	C	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3578	p.Q1193R	0.848	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	343	1	0.29	309	48	13.45	-	-	-	C	152082115	T	C	152082115	3	2	712	1	0	0	0	0	1	0	0	0	15795	1580	55	5	2257	5	TCHH	1	152082115	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1283029	152082115	97168506	45	62383										
FLG2	0	genome.wustl.edu	37	chr1	152326432	152326432	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctttgagtgcacttcactgTcactgttctcactttggcta	7	12	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	152326432	152326432	T	C	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.3830	p.D1277G	0.130	prints_Filaggrin	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	481	0	0	467	70	13.04	-	-	-	C	152326432	T	C	152326432	3	2	712	1	0	0	0	0	1	0	0	0	5969	1667	58	5	3349	5	FLG2	1	152326432	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	244317	152326432	96924189	46	62384										
CHRNB2	0	genome.wustl.edu	37	chr1	154548259	154548259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagtgaggactggaagtacGtcgccatggtgatcgaccgc	15	9	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	154548259	154548259	G	A	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	missense	c.1360	p.V454I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	171	0	0	206	32	13.39	-	-	-	A	154548259	G	A	154548259	3	1	712	1	0	0	0	0	1	0	0	0	3420	1145	40	1	1382	1	CHRNB2	1	154548259	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2221827	154548259	94702362	47	62385										
PAQR6	0	genome.wustl.edu	37	chr1	156214983	156214983	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaatggataggcgaaggctcCtgtgcggaggaccttactga	15	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	156214983	156214983	C	A	SNP	PAQR6	ENST00000335852	human	ensembl	69_37n	-1	known	nonsense	c.241	p.G81*	0.014	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781	51	0	0	55	12	17.91	-	-	-	A	156214983	C	A	156214983	4	1	712	1	0	0	0	0	0	1	0	0	11512	690	24	4	826	4	PAQR6	1	156214983	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1666724	156214983	93035638	48	62386										
HDGF	0	genome.wustl.edu	37	chr1	156713979	156713979	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcaagtcccctgctctcctCttcaacgctcctttctcgtt	5	17	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	156713979	156713979	C	T	SNP	HDGF	ENST00000368206	human	ensembl	69_37n	-1	known	silent	c.513	p.K171	1.000	NULL	pfam_PWWP	-	no_errors	HDGF	HGNC	ENSG00000143321	180	0	0	215	26	10.79	-	-	-	T	156713979	C	T	156713979	2	4	712	1	0	0	0	0	0	0	0	1	7069	912	32	2		2	HDGF	1	156713979	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	498996	156713979	92536642	49	62387										
FCRL3	0	genome.wustl.edu	37	chr1	157648595	157648595	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctgctgctagcctcccctgCagagtcgtctgggtgtgtct	12	13	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	157648595	157648595	C	G	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	missense	c.2110	p.A704P	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	183	0	0	258	33	11.34	-	-	-	G	157648595	C	G	157648595	3	3	712	1	0	0	0	0	1	0	0	0	5842	710	25	4	98	4	FCRL3	1	157648595	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	934616	157648595	91602026	50	62388										
KIRREL	0	genome.wustl.edu	37	chr1	158057581	158057581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgtccattgagccacagaCggtgcaggagggtgagcgtg	16	10	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	158057581	158057581	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	1	known	missense	c.698	p.T233M	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	73	0	0	98	27	21.6	-	-	-	T	158057581	C	T	158057581	3	4	712	1	0	0	0	0	1	0	0	0	8377	536	19	1	720	1	KIRREL	1	158057581	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	408986	158057581	91193040	51	62389										
OR10R2	0	genome.wustl.edu	37	chr1	158450421	158450421	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcctgaagattccctcagctGagggcagacggaaagcgttt	12	10	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	158450421	158450421	G	T	SNP	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	nonsense	c.754	p.E252*	0.847	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	126	1	0.79	162	20	10.99	-	-	-	T	158450421	G	T	158450421	4	4	712	1	0	0	0	0	0	1	0	0	10990	1291	45	2	756	2	OR10R2	1	158450421	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	392840	158450421	90800200	52	62390										
AIM2	0	genome.wustl.edu	37	chr1	159035971	159035971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agaagaattccttttctgtaGccactgtagcatgaaacatc	7	9	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	159035971	159035971	G	T	SNP	AIM2	ENST00000368130	human	ensembl	69_37n	-1	known	missense	c.545	p.A182D	0.660	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,superfamily_NA-bd_OB-fold-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	76	0	0	88	15	14.56	-	-	-	T	159035971	G	T	159035971	3	4	712	1	0	0	0	0	1	0	0	0	432	971	34	4	498	4	AIM2	1	159035971	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	585550	159035971	90214650	53	62391										
ARHGAP30	0	genome.wustl.edu	37	chr1	161023138	161023138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccgcacctccatgaaggccgCtgtcccattgaagcctgagg	11	15	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	161023138	161023138	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	69_37n	-1	known	missense	c.574	p.A192T	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517	65	0	0	86	17	16.5	-	-	-	T	161023138	C	T	161023138	3	4	712	1	0	0	0	0	1	0	0	0	881	797	28	4	2759	4	ARHGAP30	1	161023138	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1987167	161023138	88227483	54	62392										
NDUFS2	0	genome.wustl.edu	37	chr1	161183502	161183502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttatcgatgcaagatcaagGctcctggttttgcccatctg	9	11	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	161183502	161183502	G	A	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	1	known	missense	c.1276	p.A426T	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	137	0	0	141	29	17.06	-	-	-	A	161183502	G	A	161183502	3	1	712	1	0	0	0	0	1	0	0	0	10364	1203	42	4	1322	4	NDUFS2	1	161183502	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	160364	161183502	88067119	55	62393										
FMO4	0	genome.wustl.edu	37	chr1	171293346	171293346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtgggatgttgtcacagagAcagagggcaagcaaaataga	14	5	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	171293346	171293346	A	G	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	missense	c.391	p.T131A	0.965	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	244	0	0	299	52	14.81	-	-	-	G	171293346	A	G	171293346	3	3	712	1	0	0	0	0	1	0	0	0	6003	275	10	5	401	5	FMO4	1	171293346	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10109844	171293346	77957275	56	62394										
RC3H1	0	genome.wustl.edu	37	chr1	173916576	173916576	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cattggaccagcaccctgatAtatagttttggaagttcgtg	10	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	173916576	173916576	A	G	SNP	RC3H1	ENST00000258349	human	ensembl	69_37n	-1	known	missense	c.2668	p.Y890H	0.998	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870	171	0	0	236	27	10.27	-	-	-	G	173916576	A	G	173916576	3	3	712	1	0	0	0	0	1	0	0	0	13249	449	16	5	757	5	RC3H1	1	173916576	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2623230	173916576	75334045	57	62395										
SEC16B	0	genome.wustl.edu	37	chr1	177927333	177927333	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcgcaggtgtctccacactGggggggatctctcccgtgag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	177927333	177927333	G	-	DEL	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	frame_shift_del	c.1299	p.S434fs	0.033	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	21	0	0	57	9	13.43	-	-	-	-	177927333	G	-	177927333	7	5	712	1	0	1	0	1	0	0	0	0	14075	1335	47	0	1951	0	SEC16B	1	177927333	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4010757	177927333	71323288	58	62396										
ABL2	0	genome.wustl.edu	37	chr1	179077894	179077894	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagcagcactttcctctgaTttttttggaagcatgtcatt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	179077894	179077894	T	-	DEL	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	frame_shift_del	c.2508	p.K836fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	46	0	0	60	10	13.89	-	-	-	-	179077894	T	-	179077894	7	5	712	1	0	1	0	1	0	0	0	0	93	1490	52	0	1044	0	ABL2	1	179077894	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1150561	179077894	70172727	59	62397										
QSOX1	0	genome.wustl.edu	37	chr1	180165581	180165581	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgcagctgggtcagctgcCcggagggatgtgcagaatgt	16	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	180165581	180165581	C	T	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	silent	c.1653	p.A551	0.001	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	46	0	0	45	11	19.64	-	-	-	T	180165581	C	T	180165581	2	4	712	1	0	0	0	0	0	0	0	1	12966	610	22	4		4	QSOX1	1	180165581	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1087687	180165581	69085040	60	62398										
LHX4	0	genome.wustl.edu	37	chr1	180243355	180243355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagaacttggccacaccaatAggatttatggcaacgtgggg	12	9	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	180243355	180243355	A	G	SNP	LHX4	ENST00000263726	human	ensembl	69_37n	1	known	missense	c.814	p.R272G	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX4	HGNC	ENSG00000121454	53	0	0	62	11	15.07	-	-	-	G	180243355	A	G	180243355	3	3	712	1	0	0	0	0	1	0	0	0	8828	411	15	5	836	5	LHX4	1	180243355	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	77774	180243355	69007266	61	62399										
CACNA1E	0	genome.wustl.edu	37	chr1	181754521	181754521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gactactataagcagagtaaGgtgaagaagcagaggcagca	13	6	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	181754521	181754521	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.5646	p.K1882N	1.000	pfam_VDCC_a1su_IQ	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	117	0	0	107	26	19.55	-	-	-	T	181754521	G	T	181754521	3	4	712	1	0	0	0	0	1	0	0	0	2567	991	35	4	5812	4	CACNA1E	1	181754521	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1511166	181754521	67496100	62	62400										
LAMC2	0	genome.wustl.edu	37	chr1	183204803	183204803	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggtgcgcaaggccctgcaTgaaggagtcggaagcggaag	17	9	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	183204803	183204803	T	A	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.2394	p.H798Q	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	82	0	0	88	44	33.33	-	-	-	A	183204803	T	A	183204803	3	1	712	1	0	0	0	0	1	0	0	0	8669	1461	51	5	2456	5	LAMC2	1	183204803	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1450282	183204803	66045818	63	62401										
FAM5C	0	genome.wustl.edu	37	chr1	190067686	190067686	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggaaagctgttttcattcAcaggcataaaccagctctca	7	11	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	190067686	190067686	A	C	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1763	p.V588G	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	89	0	0	56	11	16.42	-	-	-	C	190067686	A	C	190067686	3	2	712	1	0	0	0	0	1	0	0	0	5639	159	6	5	541	5	FAM5C	1	190067686	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	6862883	190067686	59182935	64	62402										
C1orf106	0	genome.wustl.edu	37	chr1	200860730	200860730	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcaggccgcagggaggctcGgggggagggaagatggcctg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	200860730	200860730	G	-	DEL	C1orf106	ENST00000367342	human	ensembl	69_37n	1	known	frame_shift_del	c.62	p.E23fs	0.023	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362	47	0	0	46	10	17.86	-	-	-	-	200860730	G	-	200860730	7	5	712	1	0	1	0	1	0	0	0	0	1999	1116	39	0	64	0	C1orf106	1	200860730	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	10793044	200860730	48389891	65	62403										
NAV1	0	genome.wustl.edu	37	chr1	201780818	201780818	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccctggtgattctattggatGacctgagtgaagcaggctcc	12	10	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	201780818	201780818	G	A	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.4885	p.D1629N	1.000	smart_AAA+_ATPase	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	178	0	0	156	34	17.89	-	-	-	A	201780818	G	A	201780818	3	1	712	1	0	0	0	0	1	0	0	0	10255	1290	45	2	5040	2	NAV1	1	201780818	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	920088	201780818	47469803	66	62404										
KDM5B	0	genome.wustl.edu	37	chr1	202724577	202724577	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attccagccactatcaagatActcctaaaaataagaagaca	4	10	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	202724577	202724577	A	G	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.1360	p.Y454H	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	61	0	0	42	12	22.22	-	-	-	G	202724577	A	G	202724577	3	3	712	1	0	0	0	0	1	0	0	0	8187	391	14	5	3342	5	KDM5B	1	202724577	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	943759	202724577	46526044	67	62405										
PRELP	0	genome.wustl.edu	37	chr1	203452475	203452475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcctgatgaaccagcagagCcaacagacctgcctcctccc	8	17	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	203452475	203452475	C	T	SNP	PRELP	ENST00000343110	human	ensembl	69_37n	1	known	missense	c.163	p.P55S	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	95	0	0	80	16	16.67	-	-	-	T	203452475	C	T	203452475	3	4	712	1	0	0	0	0	1	0	0	0	12554	739	26	4	165	4	PRELP	1	203452475	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	727898	203452475	45798146	68	62406										
AVPR1B	0	genome.wustl.edu	37	chr1	206224648	206224648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gccgcaagcgctcccgcatgCacctgttcgtgctgcactta	10	16	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	206224648	206224648	C	T	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	missense	c.208	p.H70Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	14	0	0	35	8	18.6	-	-	-	T	206224648	C	T	206224648	3	4	712	1	0	0	0	0	1	0	0	0	1236	710	25	4	210	4	AVPR1B	1	206224648	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2772173	206224648	43025973	69	62407										
SRGAP2	0	genome.wustl.edu	37	chr1	206611317	206611317	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggttgcttatcctcaggagAggaccccctggctggggacc	15	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	206611317	206611317	A	T	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	missense	c.1377	p.R459S	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	91	0	0	99	16	13.91	-	-	-	T	206611317	A	T	206611317	3	4	712	1	0	0	0	0	1	0	0	0	15237	304	11	5	1427	5	SRGAP2	1	206611317	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	386669	206611317	42639304	70	62408										
TATDN3	0	genome.wustl.edu	37	chr1	212968443	212968443	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tatgcttgttttaggatttgGatgatgtgttggagaaagcc	13	3	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	212968443	212968443	G	A	SNP	TATDN3	ENST00000525574	human	ensembl	69_37n	1	known	nonsense	c.69	p.W23*	1.000	pfam_TatD_superfamily	pfam_TatD_superfamily	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TATDN3	HGNC	ENSG00000203705	235	0	0	277	40	12.62	-	-	-	A	212968443	G	A	212968443	4	1	712	1	0	0	0	0	0	1	0	0	15685	1174	41	2	79	2	TATDN3	1	212968443	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6357126	212968443	36282178	71	62409										
KCTD3	0	genome.wustl.edu	37	chr1	215785258	215785258	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtaagactctcatcgactggAaaaaggtaacactttattgt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	215785258	215785258	A	-	DEL	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	frame_shift_del	c.1557	p.R521fs	0.990	smart_WD40_repeat	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	102	0	0	81	13	13.83	-	-	-	-	215785258	A	-	215785258	7	5	712	1	0	1	0	1	0	0	0	0	8164	233	9	0	1615	0	KCTD3	1	215785258	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2816815	215785258	33465363	72	62410										
ARID4B	0	genome.wustl.edu	37	chr1	235383212	235383212	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agattttcattgtcttctggTtttttaatgttaacttcttt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	235383212	235383212	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	frame_shift_del	c.1479	p.K493fs	0.001	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	300	0	0	240	41	14.44	-	-	-	-	235383212	T	-	235383212	7	5	712	1	0	1	0	1	0	0	0	0	922	1722	60	0	2495	0	ARID4B	1	235383212	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	19597954	235383212	13867409	73	62411										
KMO	0	genome.wustl.edu	37	chr1	241755385	241755385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaactggatagctcacttccGgaatacaacatgtttccccg	8	12	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	241755385	241755385	G	A	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.1391	p.R464Q	0.000	NULL	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	95	0	0	80	15	15.79	-	-	-	A	241755385	G	A	241755385	3	1	712	1	0	0	0	0	1	0	0	0	8477	1116	39	1	1449	1	KMO	1	241755385	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6372173	241755385	7495236	74	62412										
HNRNPU	0	genome.wustl.edu	37	chr1	245021466	245021466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcacagttgtggcagagaacAtgcgggaacagtggccgtcc	15	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	245021466	245021466	A	G	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	silent	c.1341	p.H447	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	78	0	0	77	10	11.49	-	-	-	G	245021466	A	G	245021466	2	3	712	1	0	0	0	0	0	0	0	1	7324	214	8	5		5	HNRNPU	1	245021466	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3266081	245021466	4229155	75	62413										
AHCTF1	0	genome.wustl.edu	37	chr1	247050544	247050544	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tatgatctatcaaccaaaacCcctgaataagtttaacttgg	5	9	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	247050544	247050544	C	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.2468	p.G823A	0.999	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	212	0	0	106	33	23.74	-	-	-	G	247050544	C	G	247050544	3	3	712	1	0	0	0	0	1	0	0	0	408	623	22	4	4427	4	AHCTF1	1	247050544	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2029078	247050544	2200077	76	62414										
OR2W3	0	genome.wustl.edu	37	chr1	248059405	248059405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taccccgctgtgggcaccacGaggtggaccacttcctgcgt	12	15	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	1	248059405	248059405	G	A	SNP	OR2W3	ENST00000360358	human	ensembl	69_37n	1	known	missense	c.517	p.E173K	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243	92	0	0	65	26	28.57	-	-	-	A	248059405	G	A	248059405	3	1	712	1	0	0	0	0	1	0	0	0	11106	1059	37	1	519	1	OR2W3	1	248059405	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1008861	248059405	1191216	77	62415										
TPO	0	genome.wustl.edu	37	chr2	1507765	1507765	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaccccccctgccacgcctCtgcgaggtgcagaaacacca	8	20	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	1507765	1507765	C	G	SNP	TPO	ENST00000329066	human	ensembl	69_37n	1	known	missense	c.2432	p.S811C	0.129	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	50	0	0	64	16	20	-	-	-	G	1507765	C	G	1507765	3	3	712	1	0	0	0	0	1	0	0	0	16506	913	32	2	2482	2	TPO	2	1507765	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		1507765	241691608	78	62416										
ITGB1BP1	0	genome.wustl.edu	37	chr2	9546974	9546974	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgcaggattcagggtttctCagatgttaatacagagtcaa	10	6	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	9546974	9546974	C	T	SNP	ITGB1BP1	ENST00000355346	human	ensembl	69_37n	-1	known	missense	c.592	p.E198K	1.000	pfam_Integrin-bd_ICAP-1,smart_PTyr_interaction_dom	pfam_Integrin-bd_ICAP-1,smart_PTyr_interaction_dom	-	no_errors	ITGB1BP1	HGNC	ENSG00000119185	152	0	0	158	24	13.19	-	-	-	T	9546974	C	T	9546974	3	4	712	1	0	0	0	0	1	0	0	0	7945	835	29	2	14	2	ITGB1BP1	2	9546974	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8039209	9546974	233652399	79	62417										
PDIA6	0	genome.wustl.edu	37	chr2	10937874	10937874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctggtgttaatctttgacaGtgaccacaccttttggggga	11	8	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	10937874	10937874	G	T	SNP	PDIA6	ENST00000381611	human	ensembl	69_37n	-1	known	missense	c.186	p.H62Q	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	PDIA6	HGNC	ENSG00000143870	244	1	0.41	228	74	24.42	-	-	-	T	10937874	G	T	10937874	3	4	712	1	0	0	0	0	1	0	0	0	11745	1020	36	4	1195	4	PDIA6	2	10937874	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1390900	10937874	232261499	80	62418										
GREB1	0	genome.wustl.edu	37	chr2	11767230	11767230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcttccacccccgctaccaGgtaggccccagcagttcccc	9	20	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	11767230	11767230	G	A	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	silent	c.4449	p.Q1483	1.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	32	0	0	59	10	14.49	-	-	-	A	11767230	G	A	11767230	2	1	712	1	0	0	0	0	0	0	0	1	6811	1014	35	4		4	GREB1	2	11767230	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	829356	11767230	231432143	81	62419										
KHK	0	genome.wustl.edu	37	chr2	27322379	27322379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cggatgctttcccgccacccCgcgtggtggatacactggga	13	14	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	27322379	27322379	C	T	SNP	KHK	ENST00000260598	human	ensembl	69_37n	1	known	missense	c.745	p.R249C	0.421	pfam_PfkB	pfam_PfkB	-	no_errors	KHK	HGNC	ENSG00000138030	50	0	0	62	13	17.33	-	-	-	T	27322379	C	T	27322379	3	4	712	1	0	0	0	0	1	0	0	0	8201	652	23	1	910	1	KHK	2	27322379	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	15555149	27322379	215876994	82	62420										
IFT172	0	genome.wustl.edu	37	chr2	27688295	27688295	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cacctctccgcaatgtgtagTtgccttgcctctagtgccag	9	14	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	27688295	27688295	T	C	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	silent	c.1920	p.Q640	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	228	0	0	197	32	13.91	-	-	-	C	27688295	T	C	27688295	2	2	712	1	0	0	0	0	0	0	0	1	7611	1722	60	5		5	IFT172	2	27688295	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	365916	27688295	215511078	83	62421										
RBKS	0	genome.wustl.edu	37	chr2	28066017	28066017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agaccatgactttggctctgCtaatgacattggctgctgcc	10	11	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	28066017	28066017	C	T	SNP	RBKS	ENST00000302188	human	ensembl	69_37n	-1	known	missense	c.431	p.S144N	1.000	pfam_PfkB,tigrfam_D_ribokin_bac	pfam_PfkB,pfam_HMP-P_kinase-1,prints_Ribokinase,tigrfam_D_ribokin_bac	-	no_errors	RBKS	HGNC	ENSG00000171174	76	0	0	86	18	17.14	-	-	-	T	28066017	C	T	28066017	3	4	712	1	0	0	0	0	1	0	0	0	13191	797	28	4	553	4	RBKS	2	28066017	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	377722	28066017	215133356	84	62422										
LTBP1	0	genome.wustl.edu	37	chr2	33588538	33588538	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcggcctgggtatgaatgctActgtaagcaagggacgtact	13	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	33588538	33588538	A	G	SNP	LTBP1	ENST00000354476	human	ensembl	69_37n	1	known	missense	c.4355	p.Y1452C	1.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	170	0	0	175	32	15.46	-	-	-	G	33588538	A	G	33588538	3	3	712	1	0	0	0	0	1	0	0	0	9139	391	14	5	4521	5	LTBP1	2	33588538	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5522521	33588538	209610835	85	62423										
SOS1	0	genome.wustl.edu	37	chr2	39250249	39250249	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccattataaattcattacaAcactgtccaatgtcttttcc	2	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	39250249	39250249	A	G	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	silent	c.1320	p.C440	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	67	0	0	77	13	14.44	-	-	-	G	39250249	A	G	39250249	2	3	712	1	0	0	0	0	0	0	0	1	15025	41	2	5		5	SOS1	2	39250249	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5661711	39250249	203949124	86	62424										
COX7A2L	0	genome.wustl.edu	37	chr2	42578406	42578406	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtagagggcgatcaggcagtAgatggtccctcccacagtca	13	11	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	42578406	42578406	A	G	SNP	COX7A2L	ENST00000234301	human	ensembl	69_37n	-1	known	missense	c.298	p.Y100H	1.000	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a,pirsf_Cyt_c_oxidase_su7a-rel_mt	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a,pirsf_Cyt_c_oxidase_su7a-rel_mt	-	no_errors	COX7A2L	HGNC	ENSG00000115944	115	0	0	105	41	28.08	-	-	-	G	42578406	A	G	42578406	3	3	712	1	0	0	0	0	1	0	0	0	3811	420	15	5	50	5	COX7A2L	2	42578406	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3328157	42578406	200620967	87	62425										
PLEKHH2	0	genome.wustl.edu	37	chr2	43939380	43939380	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctagttgaccactgaaaaacAcacatactatctgactgcag	6	11	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	43939380	43939380	A	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.2318	p.H773L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	166	0	0	141	45	24.19	-	-	-	T	43939380	A	T	43939380	3	4	712	1	0	0	0	0	1	0	0	0	12151	159	6	5	2372	5	PLEKHH2	2	43939380	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1360974	43939380	199259993	88	62426										
LHCGR	0	genome.wustl.edu	37	chr2	48915224	48915224	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cggtgaagatgaggattgccAttttcttagcaatctttgta	10	6	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	48915224	48915224	A	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.1712	p.M571T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	114	0	0	99	14	12.07	-	-	-	G	48915224	A	G	48915224	3	3	712	1	0	0	0	0	1	0	0	0	8817	217	8	5	391	5	LHCGR	2	48915224	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4975844	48915224	194284149	89	62427										
SPTBN1	0	genome.wustl.edu	37	chr2	54858526	54858526	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagaacgagatcgacaactaCgaggaggactaccagaagat	11	8	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	54858526	54858526	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	69_37n	1	known	silent	c.3342	p.Y1114	0.046	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306	64	0	0	70	14	16.67	-	-	-	T	54858526	C	T	54858526	2	4	712	1	0	0	0	0	0	0	0	1	15210	547	19	1		1	SPTBN1	2	54858526	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5943302	54858526	188340847	90	62428										
MTIF2	0	genome.wustl.edu	37	chr2	55471321	55471322	+	Frame_Shift_Del	DEL	AG	AG	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cattttccagcaaccagaacAgagccttttcttaaagttcc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	55471321	55471322	AG	-	DEL	MTIF2	ENST00000263629	human	ensembl	69_37n	-1	known	frame_shift_del	c.1155_1154	p.S385fs	0.502:0.836	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	163	0	0	162	30	15.62	-	-	-	-	55471322	AG	-	55471321	7	5	712	1	0	1	0	1	0	0	0	0	10006	175	7	0	1052	0	MTIF2	2	55471321	Frame_Shift_Del	DEL	AG	TCGA-D8-A1XQ-01A-11D-A14K-09	612795	55471321	187728052	91	62429										
USP34	0	genome.wustl.edu	37	chr2	61430400	61430400	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cataaacgtcatctttgcccTgaaggttaaagatgataaaa	7	7	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	61430400	61430400	T	C	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	splice_site	c.9385-2	e75-2	1.000	-	-	-	no_errors	USP34	HGNC	ENSG00000115464	115	0	0	103	17	14.17	-	-	-	C	61430400	T	C	61430400	5	2	712	1	0	0	0	0	0	0	1	0	17162	1594	55	5	1281	5	USP34	2	61430400	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5959079	61430400	181768973	92	62430										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttcttctccctcagatctaCccccccatcaacgtgctccc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	117	0	0	150	20	11.76	-	-	-	-	71191573	C	-	71191573	7	5	712	1	0	1	0	1	0	0	0	0	1182	518	18	0	1195	0	ATP6V1B1	2	71191573	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	9761173	71191573	172007800	93	62431										
ALMS1	0	genome.wustl.edu	37	chr2	73679886	73679886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttctaaagatttcagctgtcCctgaactaactgatgtgaat	7	8	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	73679886	73679886	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.6229	p.P2077S	0.007	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	17	0	0	17	6	26.09	-	-	-	T	73679886	C	T	73679886	3	4	712	1	0	0	0	0	1	0	0	0	535	623	22	4	6259	4	ALMS1	2	73679886	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2488313	73679886	169519487	94	62432										
C2orf78	0	genome.wustl.edu	37	chr2	74042414	74042414	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtctccagctccaagccaggAaaaaaatgagaatgagaatt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	74042414	74042414	A	-	DEL	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	frame_shift_del	c.1064	p.N357fs	0.065	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	48	0	0	59	9	13.24	-	-	-	-	74042414	A	-	74042414	7	5	712	1	0	1	0	1	0	0	0	0	2215	246	9	0	1074	0	C2orf78	2	74042414	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	362528	74042414	169156959	95	62433										
LRRTM1	0	genome.wustl.edu	37	chr2	80530409	80530409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcggcagtcctggaagatgCgcacgggcacaaactggatg	15	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	80530409	80530409	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	missense	c.536	p.R179H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	63	0	0	115	19	14.18	-	-	-	T	80530409	C	T	80530409	3	4	712	1	0	0	0	0	1	0	0	0	9105	768	27	1	1036	1	LRRTM1	2	80530409	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	6487995	80530409	162668964	96	62434										
USP39	0	genome.wustl.edu	37	chr2	85866465	85866465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagcagctcatcattccccAagtgccactcttcaacatcc	6	16	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	85866465	85866465	A	G	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.1235	p.Q412R	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	118	0	0	159	23	12.57	-	-	-	G	85866465	A	G	85866465	3	3	712	1	0	0	0	0	1	0	0	0	17167	130	5	5	1269	5	USP39	2	85866465	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5336056	85866465	157332908	97	62435										
SNRNP200	0	genome.wustl.edu	37	chr2	96970585	96970585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcaatgagagaacggtcagCttggagcacaagattcgagt	13	7	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	96970585	96970585	C	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.67	p.A23T	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	64	0	0	70	12	14.63	-	-	-	T	96970585	C	T	96970585	3	4	712	1	0	0	0	0	1	0	0	0	14941	797	28	4	6519	4	SNRNP200	2	96970585	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	11104120	96970585	146228788	98	62436										
NCAPH	0	genome.wustl.edu	37	chr2	97019119	97019119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagtttacacagtgggacaGtgaaacacataatgaggtgt	11	7	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	97019119	97019119	G	A	SNP	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	missense	c.986	p.S329N	1.000	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	127	0	0	173	24	12.18	-	-	-	A	97019119	G	A	97019119	3	1	712	1	0	0	0	0	1	0	0	0	10281	1029	36	4	1016	4	NCAPH	2	97019119	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	48534	97019119	146180254	99	62437										
MGAT4A	0	genome.wustl.edu	37	chr2	99253041	99253041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctccaggatgttcttggttgCcgctatggaacaaataactg	10	9	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	99253041	99253041	C	T	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	missense	c.1340	p.G447D	1.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	124	0	0	131	16	10.88	-	-	-	T	99253041	C	T	99253041	3	4	712	1	0	0	0	0	1	0	0	0	9616	739	26	4	362	4	MGAT4A	2	99253041	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2233922	99253041	143946332	100	62438										
TSGA10	0	genome.wustl.edu	37	chr2	99722087	99722087	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccactcgccggagaatagcaTgtgccgttgttgatttagga	12	9	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	99722087	99722087	T	G	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	missense	c.284	p.H95P	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	300	0	0	352	52	12.87	-	-	-	G	99722087	T	G	99722087	3	3	712	1	0	0	0	0	1	0	0	0	16713	1464	51	5	1868	5	TSGA10	2	99722087	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	469046	99722087	143477286	101	62439										
LONRF2	0	genome.wustl.edu	37	chr2	100925592	100925592	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aatcaagagaggttcattctGacaagctgcactggcatctt	9	9	4	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	100925592	100925592	G	C	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	missense	c.775	p.Q259E	0.866	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	114	0	0	39	48	55.17	-	-	-	C	100925592	G	C	100925592	3	2	712	1	0	0	0	0	1	0	0	0	8961	1299	45	2	1533	2	LONRF2	2	100925592	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1203505	100925592	142273781	102	62440										
IL1RL2	0	genome.wustl.edu	37	chr2	102842496	102842496	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttccattctacagagaccaTagtaggtaagtgtgtgtaat	9	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	102842496	102842496	T	C	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.1130	p.I377T	0.000	superfamily_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	144	0	0	74	48	39.34	-	-	-	C	102842496	T	C	102842496	3	2	712	1	0	0	0	0	1	0	0	0	7718	1406	49	5	1160	5	IL1RL2	2	102842496	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1916904	102842496	140356877	103	62441										
CCDC93	0	genome.wustl.edu	37	chr2	118715997	118715997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttcaaggaaatgactttccGgcgatgtagctgggaggttc	14	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	118715997	118715997	G	A	SNP	CCDC93	ENST00000376300	human	ensembl	69_37n	-1	known	missense	c.949	p.R317W	0.993	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633	238	1	0.42	141	71	33.49	-	-	-	A	118715997	G	A	118715997	3	1	712	1	0	0	0	0	1	0	0	0	2899	1115	39	1	998	1	CCDC93	2	118715997	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	15873501	118715997	124483376	104	62442										
CNTNAP5	0	genome.wustl.edu	37	chr2	125192222	125192222	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcgtggagaccacatcaccTtggaactccagaaggggagg	14	10	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	125192222	125192222	T	G	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.691	p.L231V	0.997	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	75	0	0	80	21	20.79	-	-	-	G	125192222	T	G	125192222	3	3	712	1	0	0	0	0	1	0	0	0	3680	1606	56	5	709	5	CNTNAP5	2	125192222	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	6476225	125192222	118007151	105	62443										
IWS1	0	genome.wustl.edu	37	chr2	128262356	128262356	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcatcttcatcactgtccaTtttttgctttttgtgttctt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	128262356	128262356	T	-	DEL	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	frame_shift_del	c.1123	p.M375fs	0.062	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	457	0	0	383	69	15.16	-	-	-	-	128262356	T	-	128262356	7	5	712	1	0	1	0	1	0	0	0	0	7985	1493	52	0	1384	0	IWS1	2	128262356	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3070134	128262356	114937017	106	62444										
WDR33	0	genome.wustl.edu	37	chr2	128466383	128466383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	catgccttggagagaagaggAgcgttctctgctggctgggg	17	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	128466383	128466383	A	G	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3649	p.S1217P	0.995	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	80	0	0	68	24	26.09	-	-	-	G	128466383	A	G	128466383	3	3	712	1	0	0	0	0	1	0	0	0	17384	304	11	5	369	5	WDR33	2	128466383	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	204027	128466383	114732990	107	62445										
FAM168B	0	genome.wustl.edu	37	chr2	131810547	131810547	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cgtgggcacagtgaccgggtGgggggcgacaggagttgggg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	131810547	131810547	G	-	DEL	FAM168B	ENST00000389915	human	ensembl	69_37n	-1	known	frame_shift_del	c.517	p.H173fs	1.000	NULL	NULL	-	no_errors	FAM168B	HGNC	ENSG00000152102	51	0	0	53	8	13.11	-	-	-	-	131810547	G	-	131810547	7	5	712	1	0	1	0	1	0	0	0	0	5526	1348	47	0	74	0	FAM168B	2	131810547	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3344164	131810547	111388826	108	62446										
POTEE	0	genome.wustl.edu	37	chr2	132021661	132021661	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccccatgccaccctgcgccTagacctggctgggcgggaac	12	18	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	132021661	132021661	T	C	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	missense	c.2633	p.L878P	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	96	0	0	93	18	16.22	-	-	-	C	132021661	T	C	132021661	3	2	712	1	0	0	0	0	1	0	0	0	12338	1522	53	5	2691	5	POTEE	2	132021661	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	211114	132021661	111177712	109	62447										
TUBA3D	0	genome.wustl.edu	37	chr2	132235782	132235782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcaggcgggtgtccagatcGgcaatgcctgctgggaactg	17	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	132235782	132235782	G	A	SNP	TUBA3D	ENST00000321253	human	ensembl	69_37n	1	known	missense	c.49	p.G17S	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	134	1	0.74	122	17	12.23	-	-	-	A	132235782	G	A	132235782	3	1	712	1	0	0	0	0	1	0	0	0	16844	1116	39	1	55	1	TUBA3D	2	132235782	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	214121	132235782	110963591	110	62448										
ZRANB3	0	genome.wustl.edu	37	chr2	135985408	135985410	+	In_Frame_Del	DEL	TCT	TCT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggctgggatgtaagtccgTcttctttctcaatttttggt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	135985408	135985410	TCT	-	DEL	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	in_frame_del	c.2132_2130	p.E710in_frame_del	0.006:0.009:0.008	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	200	0	0	179	39	17.81	-	-	-	-	135985410	TCT	-	135985408	7	5	712	1	0	1	0	1	0	0	0	0	18317	1667	58	0	1139	0	ZRANB3	2	135985408	In_Frame_Del	DEL	TCT	TCGA-D8-A1XQ-01A-11D-A14K-09	3749626	135985408	107213965	111	62449										
KIF5C	0	genome.wustl.edu	37	chr2	149847639	149847639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcaaacagctcgagagcgCccagatggactccaacagga	11	13	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	149847639	149847639	C	T	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.1832	p.A611V	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	44	0	0	28	33	54.1	-	-	-	T	149847639	C	T	149847639	3	4	712	1	0	0	0	0	1	0	0	0	8359	739	26	4	1816	4	KIF5C	2	149847639	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	13862231	149847639	93351734	112	62450										
PRPF40A	0	genome.wustl.edu	37	chr2	153532999	153532999	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgatcctgaatagcaggggtActagtaagttgtgcttgttc	12	6	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	153532999	153532999	A	G	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	silent	c.951	p.S317	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	108	0	0	105	13	11.02	-	-	-	G	153532999	A	G	153532999	2	3	712	1	0	0	0	0	0	0	0	1	12652	388	14	5		5	PRPF40A	2	153532999	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3685360	153532999	89666374	113	62451										
ITGB6	0	genome.wustl.edu	37	chr2	160958270	160958270	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcaatctgtggaaaggtctaCcttttgtttttccctgtgtt	9	8	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	160958270	160958270	C	T	SNP	ITGB6	ENST00000475438	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.002	-	-	-	no_errors	ITGB6	HGNC	ENSG00000115221	330	0	0	279	44	13.62	-	-	-	T	160958270	C	T	160958270	5	4	712	1	0	0	0	0	0	0	1	0	7953	507	18	4	26	4	ITGB6	2	160958270	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	7425271	160958270	82241103	114	62452										
GRB14	0	genome.wustl.edu	37	chr2	165365340	165365340	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cactattgccaaattcgctgAaaaactgcaaatgccgcggt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	165365340	165365340	A	-	DEL	GRB14	ENST00000263915	human	ensembl	69_37n	-1	known	frame_shift_del	c.839	p.F280fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	140	0	0	108	17	13.6	-	-	-	-	165365340	A	-	165365340	7	5	712	1	0	1	0	1	0	0	0	0	6808	246	9	0	815	0	GRB14	2	165365340	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4407070	165365340	77834033	115	62453										
LRP2	0	genome.wustl.edu	37	chr2	170127436	170127436	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgccatcaatcttttgcttAaaaatcatgtgttttgacat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	170127436	170127436	A	-	DEL	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	frame_shift_del	c.2298	p.F766fs	0.952	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	107	0	0	87	22	19.82	-	-	-	-	170127436	A	-	170127436	7	5	712	1	0	1	0	1	0	0	0	0	9022	359	13	0	11925	0	LRP2	2	170127436	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4762096	170127436	73071937	116	62454										
LRP2	0	genome.wustl.edu	37	chr2	170129568	170129568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccccattgttatctttacacGgattggtagctggaaggaaa	10	8	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	170129568	170129568	G	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1985	p.P662L	1.000	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	78	0	0	88	11	11	-	-	-	A	170129568	G	A	170129568	3	1	712	1	0	0	0	0	1	0	0	0	9022	1116	39	1	12242	1	LRP2	2	170129568	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2132	170129568	73069805	117	62455										
CYBRD1	0	genome.wustl.edu	37	chr2	172411120	172411120	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctggtgttcggggccctcaTtttttggatagtcaccagac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	172411120	172411120	T	-	DEL	CYBRD1	ENST00000321348	human	ensembl	69_37n	1	known	frame_shift_del	c.644	p.W217fs	0.999	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967	124	0	0	83	15	15.15	-	-	-	-	172411120	T	-	172411120	7	5	712	1	0	1	0	1	0	0	0	0	4165	1493	52	0	658	0	CYBRD1	2	172411120	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2281552	172411120	70788253	118	62456										
SLC25A12	0	genome.wustl.edu	37	chr2	172641950	172641950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggaggaaggtctgcaatgCgtgacttaggtgttggttct	15	6	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	172641950	172641950	C	T	SNP	SLC25A12	ENST00000422440	human	ensembl	69_37n	-1	known	missense	c.1871	p.R624H	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840	152	1	0.65	130	33	20.25	-	-	-	T	172641950	C	T	172641950	3	4	712	1	0	0	0	0	1	0	0	0	14563	768	27	1	169	1	SLC25A12	2	172641950	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	230830	172641950	70557423	119	62457										
HNRNPA3	0	genome.wustl.edu	37	chr2	178080589	178080589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaccacacaaggttgatgggCgtgtagtggaaccaaagaga	14	7	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	178080589	178080589	C	T	SNP	HNRNPA3	ENST00000392524	human	ensembl	69_37n	1	known	missense	c.307	p.R103C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144	115	0	0	84	21	20	-	-	-	T	178080589	C	T	178080589	3	4	712	1	0	0	0	0	1	0	0	0	7311	768	27	1	317	1	HNRNPA3	2	178080589	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5438639	178080589	65118784	120	62458										
TTN	0	genome.wustl.edu	37	chr2	179468913	179468913	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttggttttcctggaggtccAggaaggcgataaggatcttg	14	6	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	179468913	179468913	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.46797	p.P15599	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	116	0	0	107	26	19.4	-	-	-	G	179468913	A	G	179468913	2	3	712	1	0	0	0	0	0	0	0	1	16832	175	7	5		5	TTN	2	179468913	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1388324	179468913	63730460	121	62459										
TTN	0	genome.wustl.edu	37	chr2	179473134	179473134	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttccattatcttttggttcAttccatttcactagcatact	3	11	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	179473134	179473134	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.44772	p.N14924	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	88	0	0	28	53	65.43	-	-	-	G	179473134	A	G	179473134	2	3	712	1	0	0	0	0	0	0	0	1	16832	214	8	5		5	TTN	2	179473134	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4221	179473134	63726239	122	62460										
CWC22	0	genome.wustl.edu	37	chr2	180835741	180835741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaaccaatagctacttcaacGctatcatctgttggtctttc	5	11	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	180835741	180835741	G	A	SNP	CWC22	ENST00000295749	human	ensembl	69_37n	-1	known	silent	c.867	p.S289	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	184	0	0	113	61	35.06	-	-	-	A	180835741	G	A	180835741	2	1	712	1	0	0	0	0	0	0	0	1	4099	1078	38	1		1	CWC22	2	180835741	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1362607	180835741	62363632	123	62461										
PDE1A	0	genome.wustl.edu	37	chr2	183129052	183129052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttcatcgatataaactgctTccagcacagatgccgcatat	6	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	183129052	183129052	T	C	SNP	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	missense	c.191	p.E64G	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252	94	0	0	89	13	12.75	-	-	-	C	183129052	T	C	183129052	3	2	712	1	0	0	0	0	1	0	0	0	11706	1783	62	5	1546	5	PDE1A	2	183129052	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2293311	183129052	60070321	124	62462										
VIL1	0	genome.wustl.edu	37	chr2	219314015	219314015	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgccttctctgctctgcctCgatggaagcaacaaaacctc	7	15	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	219314015	219314015	C	T	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	nonsense	c.2440	p.R814*	0.845	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	95	0	0	79	20	20.2	-	-	-	T	219314015	C	T	219314015	4	4	712	1	0	0	0	0	0	1	0	0	17261	876	31	1	2514	1	VIL1	2	219314015	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	36184963	219314015	23885358	125	62463										
COL4A4	0	genome.wustl.edu	37	chr2	227974003	227974003	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctcctgcaccccaagatccCtaaacatgagaaaaatcagt	5	14	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	227974003	227974003	C	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	splice_site	c.595-1	e9-1	1.000	-	-	-	no_errors	COL4A4	HGNC	ENSG00000081052	49	0	0	34	6	15	-	-	-	A	227974003	C	A	227974003	5	1	712	1	0	0	0	0	0	0	1	0	3723	695	24	4	4634	4	COL4A4	2	227974003	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8659988	227974003	15225370	126	62464										
SLC19A3	0	genome.wustl.edu	37	chr2	228563696	228563696	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggctgttcagctggcccttAttcagcttccctgaagtgct	10	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	228563696	228563696	A	G	SNP	SLC19A3	ENST00000258403	human	ensembl	69_37n	-1	known	silent	c.735	p.N245	0.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917	191	0	0	142	29	16.96	-	-	-	G	228563696	A	G	228563696	2	3	712	1	0	0	0	0	0	0	0	1	14519	446	16	5		5	SLC19A3	2	228563696	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	589693	228563696	14635677	127	62465										
SPHKAP	0	genome.wustl.edu	37	chr2	228882606	228882606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtttcctcacagcggtcccGctcccctggctctctttctt	7	17	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	228882606	228882606	G	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	silent	c.2964	p.S988	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	64	0	0	42	20	32.26	-	-	-	A	228882606	G	A	228882606	2	1	712	1	0	0	0	0	0	0	0	1	15139	1078	38	1		1	SPHKAP	2	228882606	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	318910	228882606	14316767	128	62466										
NCL	0	genome.wustl.edu	37	chr2	232326496	232326496	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggatggcagcacccttcttaCcaggagttgctaccaatgct	10	12	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	232326496	232326496	C	G	SNP	NCL	ENST00000322723	human	ensembl	69_37n	-1	known	missense	c.368	p.G123A	0.840	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053	444	1	0.22	336	76	18.4	-	-	-	G	232326496	C	G	232326496	3	3	712	1	0	0	0	0	1	0	0	0	10298	507	18	4	1812	4	NCL	2	232326496	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3443890	232326496	10872877	129	62467										
TRPM8	0	genome.wustl.edu	37	chr2	234846052	234846052	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcacatggaaggcacccagAtcaaccaaagtgagaaatgg	11	9	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	234846052	234846052	A	T	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.247	p.I83F	0.990	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	78	0	0	70	14	16.67	-	-	-	T	234846052	A	T	234846052	3	4	712	1	0	0	0	0	1	0	0	0	16688	333	12	5	257	5	TRPM8	2	234846052	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2519556	234846052	8353321	130	62468										
SCLY	0	genome.wustl.edu	37	chr2	238999869	238999869	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttcttacaggacagagaacAccccaatgattgctggcctt	8	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	238999869	238999869	A	G	SNP	SCLY	ENST00000254663	human	ensembl	69_37n	1	known	missense	c.919	p.T307A	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cysteine_dSase_NifS	-	no_errors	SCLY	HGNC	ENSG00000132330	288	1	0.34	195	43	17.92	-	-	-	G	238999869	A	G	238999869	3	3	712	1	0	0	0	0	1	0	0	0	13995	159	6	5	925	5	SCLY	2	238999869	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4153817	238999869	4199504	131	62469										
PER2	0	genome.wustl.edu	37	chr2	239162058	239162058	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agctggcgtggggaggtgccGggggtgctgccacagtccct							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	239162058	239162058	G	-	DEL	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	frame_shift_del	c.2606	p.P869fs	0.003	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	31	0	0	20	6	22.22	-	-	-	-	239162058	G	-	239162058	7	5	712	1	0	1	0	1	0	0	0	0	11803	1116	39	0	1181	0	PER2	2	239162058	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	162189	239162058	4037315	132	62470										
HDAC4	0	genome.wustl.edu	37	chr2	239975187	239975187	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggcttcacgcccacggacaGcgaggccatggcggtgaccg	16	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	2	239975187	239975187	G	A	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	silent	c.3184	p.L1062	0.997	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	29	0	0	26	4	13.33	-	-	-	A	239975187	G	A	239975187	2	1	712	1	0	0	0	0	0	0	0	1	7060	962	34	4		4	HDAC4	2	239975187	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	813129	239975187	3224186	133	62471										
CRELD1	0	genome.wustl.edu	37	chr3	9976279	9976279	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcatacctgccggggactgGttgacagctttaacaaggtg	13	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	9976279	9976279	G	C	SNP	CRELD1	ENST00000326434	human	ensembl	69_37n	1	known	missense	c.157	p.V53L	1.000	pfam_DUF3456	pfam_DUF3456,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_Furin_repeat,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703	46	0	0	44	7	13.73	-	-	-	C	9976279	G	C	9976279	3	2	712	1	0	0	0	0	1	0	0	0	3896	1261	44	4	159	4	CRELD1	3	9976279	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09		9976279	188046151	134	62472										
TATDN2	0	genome.wustl.edu	37	chr3	10302031	10302031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaagggagaggctgccactCgggcaaaaccaagcgcagca	15	11	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	10302031	10302031	C	T	SNP	TATDN2	ENST00000287652	human	ensembl	69_37n	1	known	missense	c.625	p.R209W	0.000	NULL	pfam_TatD_superfamily	-	no_errors	TATDN2	HGNC	ENSG00000157014	33	0	0	17	26	59.09	-	-	-	T	10302031	C	T	10302031	3	4	712	1	0	0	0	0	1	0	0	0	15684	875	31	1	631	1	TATDN2	3	10302031	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	325752	10302031	187720399	135	62473										
ATG7	0	genome.wustl.edu	37	chr3	11383701	11383701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caaggttgtgtctgtcaaatGtctgctgcttggagccggca	13	9	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	11383701	11383701	G	A	SNP	ATG7	ENST00000354449	human	ensembl	69_37n	1	known	missense	c.1073	p.C358Y	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_E1-like_Apg7	-	no_errors	ATG7	HGNC	ENSG00000197548	128	0	0	99	21	17.36	-	-	-	A	11383701	G	A	11383701	3	1	712	1	0	0	0	0	1	0	0	0	1105	1377	48	4	1111	4	ATG7	3	11383701	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1081670	11383701	186638729	136	62474										
KCNH8	0	genome.wustl.edu	37	chr3	19491706	19491706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggatctgaaagatttcatccGtgtccatcacttgccccaac	7	13	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	19491706	19491706	G	A	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.1484	p.R495H	1.000	superfamily_cNMP-bd-like,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	138	0	0	159	26	14.05	-	-	-	A	19491706	G	A	19491706	3	1	712	1	0	0	0	0	1	0	0	0	8092	1145	40	1	1518	1	KCNH8	3	19491706	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8108005	19491706	178530724	137	62475										
PDCD6IP	0	genome.wustl.edu	37	chr3	33863451	33863451	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcaattttttacagctctTgcaagcttaggatatgaaaa	6	7	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	33863451	33863451	T	C	SNP	PDCD6IP	ENST00000457054	human	ensembl	69_37n	1	known	silent	c.339	p.L113	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	61	0	0	54	11	16.92	-	-	-	C	33863451	T	C	33863451	2	2	712	1	0	0	0	0	0	0	0	1	11697	1799	63	5		5	PDCD6IP	3	33863451	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	14371745	33863451	164158979	138	62476										
SCN5A	0	genome.wustl.edu	37	chr3	38592012	38592012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagaagttctcactcatcaCgtaggcgatgaggccctctc	11	12	4	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	38592012	38592012	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5851	p.V1951M	0.997	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	74	0	0	122	15	10.79	-	-	-	T	38592012	C	T	38592012	3	4	712	1	0	0	0	0	1	0	0	0	14010	536	19	1	203	1	SCN5A	3	38592012	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4728561	38592012	159430418	139	62477										
SCN11A	0	genome.wustl.edu	37	chr3	38991723	38991723	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaggctggggtacttctcctGtctggtctttagacttcttt	11	9	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	38991723	38991723	G	T	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.131	p.T44K	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	67	0	0	59	85	58.62	-	-	-	T	38991723	G	T	38991723	3	4	712	1	0	0	0	0	1	0	0	0	14001	1377	48	4	5348	4	SCN11A	3	38991723	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	399711	38991723	159030707	140	62478										
TRAK1	0	genome.wustl.edu	37	chr3	42166958	42166958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaagtcgagatcattagcctGctggaggagcagctgcccca	13	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	42166958	42166958	G	A	SNP	TRAK1	ENST00000327628	human	ensembl	69_37n	1	putative	silent	c.138	p.L46	0.996	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	78	0	0	92	15	14.02	-	-	-	A	42166958	G	A	42166958	2	1	712	1	0	0	0	0	0	0	0	1	16545	1306	46	4		4	TRAK1	3	42166958	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3175235	42166958	155855472	141	62479										
VIPR1	0	genome.wustl.edu	37	chr3	42567418	42567418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcaccgacgaaggctggaCgcacctggagcctggcccgt	14	15	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	42567418	42567418	C	T	SNP	VIPR1	ENST00000325123	human	ensembl	69_37n	1	known	missense	c.332	p.T111M	0.976	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812	42	0	0	44	6	12	-	-	-	T	42567418	C	T	42567418	3	4	712	1	0	0	0	0	1	0	0	0	17266	536	19	1	346	1	VIPR1	3	42567418	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	400460	42567418	155455012	142	62480										
KIF15	0	genome.wustl.edu	37	chr3	44890031	44890031	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agagtaaaatagttgaagaaAtgctgaaaatgaaagcagag	11	2	0	6			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	44890031	44890031	A	C	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	missense	c.3787	p.M1263L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	144	0	0	145	22	13.17	-	-	-	C	44890031	A	C	44890031	3	2	712	1	0	0	0	0	1	0	0	0	8329	101	4	5	3913	5	KIF15	3	44890031	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2322613	44890031	153132399	143	62481										
CELSR3	0	genome.wustl.edu	37	chr3	48696383	48696383	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtctagctttcggctgagtcGcagctccccactggtctggt	12	13	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	48696383	48696383	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	nonsense	c.3685	p.R1229*	0.984	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	76	0	0	62	16	20.51	-	-	-	A	48696383	G	A	48696383	4	1	712	1	0	0	0	0	0	1	0	0	3252	1095	38	1	6393	1	CELSR3	3	48696383	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3806352	48696383	149326047	144	62482										
CCDC36	0	genome.wustl.edu	37	chr3	49282178	49282178	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaagacatgtgagtgcctcAtgtttgaggtatcagcagag	12	8	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	49282178	49282178	A	G	SNP	CCDC36	ENST00000366429	human	ensembl	69_37n	1	known	silent	c.495	p.S165	0.000	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421	77	0	0	64	11	14.47	-	-	-	G	49282178	A	G	49282178	2	3	712	1	0	0	0	0	0	0	0	1	2834	232	8	5		5	CCDC36	3	49282178	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	585795	49282178	148740252	145	62483										
C3orf62	0	genome.wustl.edu	37	chr3	49313959	49313959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcatcaatacattttccttgCtggttagaggttttctctcg	8	9	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	49313959	49313959	C	T	SNP	C3orf62	ENST00000343010	human	ensembl	69_37n	-1	known	missense	c.347	p.S116N	1.000	NULL	NULL	-	no_errors	C3orf62	HGNC	ENSG00000188315	285	0	0	218	36	14.17	-	-	-	T	49313959	C	T	49313959	3	4	712	1	0	0	0	0	1	0	0	0	2258	797	28	4	468	4	C3orf62	3	49313959	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	31781	49313959	148708471	146	62484										
UBA7	0	genome.wustl.edu	37	chr3	49850974	49850974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagagtgaggctgcccacacCcatcagaaccaagttcttgg	10	13	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	49850974	49850974	C	A	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.163	p.G55C	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	25	0	0	17	6	26.09	-	-	-	A	49850974	C	A	49850974	3	1	712	1	0	0	0	0	1	0	0	0	16930	623	22	4	2967	4	UBA7	3	49850974	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	537015	49850974	148171456	147	62485										
TMEM115	0	genome.wustl.edu	37	chr3	50396186	50396186	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctacagacacattcaccacTgagaagaagatgagcagctc	8	12	1	5			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	50396186	50396186	T	C	SNP	TMEM115	ENST00000266025	human	ensembl	69_37n	-1	known	silent	c.309	p.S103	0.056	pfam_DUF1751_Mem_euk	pfam_DUF1751_Mem_euk	-	no_errors	TMEM115	HGNC	ENSG00000126062	37	0	0	26	8	23.53	-	-	-	C	50396186	T	C	50396186	2	2	712	1	0	0	0	0	0	0	0	1	16124	1567	55	5		5	TMEM115	3	50396186	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	545212	50396186	147626244	148	62486										
CACNA2D2	0	genome.wustl.edu	37	chr3	50403245	50403245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccgctcaggactcaccaggCggcagcagaggtccaccagg	13	16	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	50403245	50403245	C	T	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	missense	c.2932	p.A978T	0.991	NULL	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	36	0	0	40	6	12.77	-	-	-	T	50403245	C	T	50403245	3	4	712	1	0	0	0	0	1	0	0	0	2574	768	27	1	550	1	CACNA2D2	3	50403245	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	7059	50403245	147619185	149	62487										
ALAS1	0	genome.wustl.edu	37	chr3	52238804	52238804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttttaaaactgtgaaccggCgagcacacatcttccccatg	7	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	52238804	52238804	C	G	SNP	ALAS1	ENST00000310271	human	ensembl	69_37n	1	known	missense	c.673	p.R225G	0.856	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330	127	0	0	83	50	37.59	-	-	-	G	52238804	C	G	52238804	3	3	712	1	0	0	0	0	1	0	0	0	484	760	27	3	687	3	ALAS1	3	52238804	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1835559	52238804	145783626	150	62488										
IL17RB	0	genome.wustl.edu	37	chr3	53891711	53891711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggggatagtgaaggtgctacGgtgcaggtaaagttcagtga	17	4	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	53891711	53891711	G	A	SNP	IL17RB	ENST00000288167	human	ensembl	69_37n	1	known	silent	c.741	p.T247	0.843	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736	147	0	0	148	17	10.3	-	-	-	A	53891711	G	A	53891711	2	1	712	1	0	0	0	0	0	0	0	1	7694	1103	39	1		1	IL17RB	3	53891711	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1652907	53891711	144130719	151	62489										
CACNA2D3	0	genome.wustl.edu	37	chr3	54537654	54537654	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acatcagtctaagtgacgtcCaagtaccaacgaacatgtac	7	11	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	54537654	54537654	C	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	69_37n	1	known	missense	c.517	p.Q173K	1.000	pfam_VWA_N	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445	84	0	0	75	13	14.77	-	-	-	A	54537654	C	A	54537654	3	1	712	1	0	0	0	0	1	0	0	0	2575	595	21	4	535	4	CACNA2D3	3	54537654	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	645943	54537654	143484776	152	62490										
ABHD6	0	genome.wustl.edu	37	chr3	58279470	58279472	+	In_Frame_Del	DEL	ACA	ACA	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcttctgtgcacaacacagAcaacaacaagaagctggact							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	58279470	58279472	ACA	-	DEL	ABHD6	ENST00000295962	human	ensembl	69_37n	1	known	in_frame_del	c.992_994	p.N333in_frame_del	1.000:1.000:1.000	NULL	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686	36	0	0	29	12	29.27	-	-	-	-	58279472	ACA	-	58279470	7	5	712	1	0	1	0	1	0	0	0	0	86	275	10	0	1022	0	ABHD6	3	58279470	In_Frame_Del	DEL	ACA	TCGA-D8-A1XQ-01A-11D-A14K-09	3741816	58279470	139742960	153	62491										
PTPRG	0	genome.wustl.edu	37	chr3	62240892	62240892	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttctctgaggattttgaggTatgtttcaaggctggaagtt	13	4	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	62240892	62240892	T	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	splice_site	c.2559+2	e16+2	1.000	-	-	-	no_errors	PTPRG	HGNC	ENSG00000144724	88	0	0	81	22	21.36	-	-	-	C	62240892	T	C	62240892	5	2	712	1	0	0	0	0	0	0	1	0	12885	1652	57	5	2623	5	PTPRG	3	62240892	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3961422	62240892	135781538	154	62492										
SYNPR	0	genome.wustl.edu	37	chr3	63466556	63466556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcggtggctattctggaggcCtgcggctgagtgtggactgc	18	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	63466556	63466556	C	T	SNP	SYNPR	ENST00000472899	human	ensembl	69_37n	1	known	missense	c.116	p.P39L	1.000	NULL	NULL	-	no_errors	SYNPR	HGNC	ENSG00000163630	113	0	0	106	16	13.11	-	-	-	T	63466556	C	T	63466556	3	4	712	1	0	0	0	0	1	0	0	0	15551	680	24	4	171	4	SYNPR	3	63466556	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1225664	63466556	134555874	155	62493										
COL8A1	0	genome.wustl.edu	37	chr3	99514813	99514813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcccgtgatgtacacgtacGacgagtacaaaaagggcttc	11	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	99514813	99514813	G	A	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	missense	c.2068	p.D690N	0.997	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	26	0	0	32	9	21.95	-	-	-	A	99514813	G	A	99514813	3	1	712	1	0	0	0	0	1	0	0	0	3735	1058	37	1	2074	1	COL8A1	3	99514813	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	36048257	99514813	98507617	156	62494										
C3orf15	0	genome.wustl.edu	37	chr3	119451169	119451169	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaacttgtaggaaagagaaaGaatatagaagggaagttgga	13	1	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	119451169	119451169	G	C	SNP	C3orf15	ENST00000273390	human	ensembl	69_37n	1	known	missense	c.1047	p.K349N	0.998	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	C3orf15	HGNC	ENSG00000183833	66	0	0	43	11	20.37	-	-	-	C	119451169	G	C	119451169	3	2	712	1	0	0	0	0	1	0	0	0	2229	933	33	2	1081	2	C3orf15	3	119451169	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	19936356	119451169	78571261	157	62495										
HGD	0	genome.wustl.edu	37	chr3	120347339	120347339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggccttgagtccccactttGtgaccgccagacttaaagat	9	12	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	120347339	120347339	G	A	SNP	HGD	ENST00000283871	human	ensembl	69_37n	-1	known	missense	c.1226	p.T409I	1.000	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924	147	0	0	109	32	22.7	-	-	-	A	120347339	G	A	120347339	3	1	712	1	0	0	0	0	1	0	0	0	7135	1377	48	4	115	4	HGD	3	120347339	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	896170	120347339	77675091	158	62496										
PARP15	0	genome.wustl.edu	37	chr3	122296641	122296641	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcgggaggcggggagcgtgCtgccggccgggaaccgtggg	22	10	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	122296641	122296641	C	T	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	silent	c.127	p.L43	0.004	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	19	0	0	30	9	23.08	-	-	-	T	122296641	C	T	122296641	2	4	712	1	0	0	0	0	0	0	0	1	11532	796	28	4		4	PARP15	3	122296641	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1949302	122296641	75725789	159	62497										
OSBPL11	0	genome.wustl.edu	37	chr3	125313607	125313607	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagctttccttcgctctccGagactttcattgtggacact	7	14	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	125313607	125313607	G	T	SNP	OSBPL11	ENST00000296220	human	ensembl	69_37n	-1	known	nonsense	c.38	p.S13*	0.983	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	103	0	0	129	49	27.53	-	-	-	T	125313607	G	T	125313607	4	4	712	1	0	0	0	0	0	1	0	0	11349	1059	37	3	2257	3	OSBPL11	3	125313607	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3016966	125313607	72708823	160	62498										
COL6A5	0	genome.wustl.edu	37	chr3	130110138	130110138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccatttggtgaagaaagcaGatgttggcagggaccgagtt	14	6	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	130110138	130110138	G	C	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.2533	p.D845H	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	80	0	0	130	17	11.56	-	-	-	C	130110138	G	C	130110138	3	2	712	1	0	0	0	0	1	0	0	0	3732	942	33	2	2555	2	COL6A5	3	130110138	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4796531	130110138	67912292	161	62499										
TOPBP1	0	genome.wustl.edu	37	chr3	133356790	133356790	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atggtgtatccaggtgtaacGagggctccttctgaagtggt	14	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	133356790	133356790	G	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	nonsense	c.2450	p.S817*	0.955	superfamily_Secretoglobin	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	282	1	0.35	367	55	13.03	-	-	-	T	133356790	G	T	133356790	4	4	712	1	0	0	0	0	0	1	0	0	16465	1059	37	3	2178	3	TOPBP1	3	133356790	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3246652	133356790	64665640	162	62500										
EPHB1	0	genome.wustl.edu	37	chr3	134851765	134851765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgggcctgacggagtgccgcGtctccatcagcagcctgtgg	15	13	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	134851765	134851765	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.1171	p.V391I	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	28	0	0	42	7	14.29	-	-	-	A	134851765	G	A	134851765	3	1	712	1	0	0	0	0	1	0	0	0	5211	1145	40	1	1189	1	EPHB1	3	134851765	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1494975	134851765	63170665	163	62501										
EPHB1	0	genome.wustl.edu	37	chr3	134977954	134977954	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taagtcagtcaccaacggcaAtggcatgagaactcttgttt	9	9	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	134977954	134977954	A	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	missense	c.2947	p.M983L	0.756	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	121	0	0	142	48	25.26	-	-	-	T	134977954	A	T	134977954	3	4	712	1	0	0	0	0	1	0	0	0	5211	101	4	5	3009	5	EPHB1	3	134977954	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	126189	134977954	63044476	164	62502										
PPP2R3A	0	genome.wustl.edu	37	chr3	135721144	135721144	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcagtgaaggaagtggtaaTgatacaatttctagctctga	10	5	3	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	135721144	135721144	T	C	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	silent	c.804	p.N268	0.790	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	61	0	0	61	27	30.68	-	-	-	C	135721144	T	C	135721144	2	2	712	1	0	0	0	0	0	0	0	1	12465	1461	51	5		5	PPP2R3A	3	135721144	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	743190	135721144	62301286	165	62503										
SOX14	0	genome.wustl.edu	37	chr3	137483947	137483947	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gacacggacccgctcaaggcGgctggcctgcccgtgggggc	17	15	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	137483947	137483947	G	A	SNP	SOX14	ENST00000306087	human	ensembl	69_37n	1	known	silent	c.321	p.A107	0.971	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX14	HGNC	ENSG00000168875	50	0	0	46	7	12.96	-	-	-	A	137483947	G	A	137483947	2	1	712	1	0	0	0	0	0	0	0	1	15034	1103	39	1		1	SOX14	3	137483947	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1762803	137483947	60538483	166	62504										
AGTR1	0	genome.wustl.edu	37	chr3	148459202	148459202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgtctcagcattgatcgatAcctggctattgttcacccaa	8	11	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	148459202	148459202	A	G	SNP	AGTR1	ENST00000349243	human	ensembl	69_37n	1	known	missense	c.380	p.Y127C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Frt_met_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor	-	no_errors	AGTR1	HGNC	ENSG00000144891	37	0	0	57	7	10.94	-	-	-	G	148459202	A	G	148459202	3	3	712	1	0	0	0	0	1	0	0	0	401	391	14	5	382	5	AGTR1	3	148459202	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10975255	148459202	49563228	167	62505										
IGSF10	0	genome.wustl.edu	37	chr3	151154686	151154686	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtgatttctggcttgggaaCtcccaaggccacacagtgga	12	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	151154686	151154686	C	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.7663	p.V2555F	0.399	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	60	0	0	101	12	10.62	-	-	-	A	151154686	C	A	151154686	3	1	712	1	0	0	0	0	1	0	0	0	7651	565	20	4	212	4	IGSF10	3	151154686	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2695484	151154686	46867744	168	62506										
IGSF10	0	genome.wustl.edu	37	chr3	151165784	151165784	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctttgtcctttcatcttgActgaaacttggaaaatcaaa	6	9	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	151165784	151165784	A	G	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.1985	p.V662A	0.870	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	111	0	0	55	129	69.73	-	-	-	G	151165784	A	G	151165784	3	3	712	1	0	0	0	0	1	0	0	0	7651	275	10	5	5946	5	IGSF10	3	151165784	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	11098	151165784	46856646	169	62507										
KCNAB1	0	genome.wustl.edu	37	chr3	156175252	156175252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccccttgcaggttgctgaacGgctgatgaccatcgcctatg	11	13	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	3	156175252	156175252	G	C	SNP	KCNAB1	ENST00000490337	human	ensembl	69_37n	1	known	missense	c.368	p.R123P	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282	173	0	0	306	38	11.05	-	-	-	C	156175252	G	C	156175252	3	2	712	1	0	0	0	0	1	0	0	0	8063	1116	39	3	853	3	KCNAB1	3	156175252	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5009468	156175252	41847178	170	62508										
C4orf50	0	genome.wustl.edu	37	chr4	5966750	5966750	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggtgacaggtgccttctcaCcttcagagaatccagttggg	12	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	5966750	5966750	C	A	SNP	C4orf50	ENST00000531445	human	ensembl	69_37n	-1	known	splice_site	c.2001+1	e6+1	0.998	-	-	-	no_errors	C4orf50	HGNC	ENSG00000181215	72	0	0	37	31	45.59	-	-	-	A	5966750	C	A	5966750	5	1	712	1	0	0	0	0	0	0	1	0	2297	521	18	4	258	4	C4orf50	4	5966750	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		5966750	185187526	171	62509										
TAPT1	0	genome.wustl.edu	37	chr4	16165061	16165061	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	catctggagttgtcaaaaacTgatcagaattgcttgtcaca	8	8	4	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	16165061	16165061	T	C	SNP	TAPT1	ENST00000405303	human	ensembl	69_37n	-1	known	missense	c.1574	p.Q525R	1.000	NULL	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762	212	0	0	194	47	19.5	-	-	-	C	16165061	T	C	16165061	3	2	712	1	0	0	0	0	1	0	0	0	15646	1580	55	5	133	5	TAPT1	4	16165061	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	10198311	16165061	174989215	172	62510										
QDPR	0	genome.wustl.edu	37	chr4	17493943	17493943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggtgaacagcacccttggCcatgccgtacccgatcatac	9	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	17493943	17493943	C	T	SNP	QDPR	ENST00000281243	human	ensembl	69_37n	-1	known	missense	c.457	p.A153T	1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR	-	no_errors	QDPR	HGNC	ENSG00000151552	35	0	0	28	10	25.64	-	-	-	T	17493943	C	T	17493943	3	4	712	1	0	0	0	0	1	0	0	0	12955	739	26	4	289	4	QDPR	4	17493943	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1328882	17493943	173660333	173	62511										
GPR125	0	genome.wustl.edu	37	chr4	22394213	22394213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtggttcatcaggatcctggCatcttttagcttttttagtg	10	7	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	22394213	22394213	C	T	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	missense	c.2582	p.C861Y	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	353	1	0.28	289	81	21.89	-	-	-	T	22394213	C	T	22394213	3	4	712	1	0	0	0	0	1	0	0	0	6689	710	25	4	1395	4	GPR125	4	22394213	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4900270	22394213	168760063	174	62512										
CCDC149	0	genome.wustl.edu	37	chr4	24824159	24824159	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaaacttccagagttcttaaTtttttttccagctcagccac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	24824159	24824159	T	-	DEL	CCDC149	ENST00000504487	human	ensembl	69_37n	-1	known	frame_shift_del	c.1002	p.K334fs	0.997	pfam_Coiled-coil_dom-contain_pr_149	pfam_Coiled-coil_dom-contain_pr_149	-	no_errors	CCDC149	HGNC	ENSG00000181982	109	0	0	120	25	17.01	-	-	-	-	24824159	T	-	24824159	7	5	712	1	0	1	0	1	0	0	0	0	2808	1490	52	0	599	0	CCDC149	4	24824159	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2429946	24824159	166330117	175	62513										
ANAPC4	0	genome.wustl.edu	37	chr4	25390191	25390191	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctaaactacctacactgccAaaaaagtatgtatcactggt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	25390191	25390191	A	-	DEL	ANAPC4	ENST00000510092	human	ensembl	69_37n	1	known	frame_shift_del	c.438	p.N148fs	0.985	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	172	0	0	97	21	17.65	-	-	-	-	25390191	A	-	25390191	7	5	712	1	0	1	0	1	0	0	0	0	604	117	5	0	452	0	ANAPC4	4	25390191	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	566032	25390191	165764085	176	62514										
TLR1	0	genome.wustl.edu	37	chr4	38798998	38798998	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggctgctaaagctgccacaTccaggaaggtcagttaaaga	11	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	38798998	38798998	T	C	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	silent	c.1455	p.G485	0.672	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	166	0	0	127	23	15.33	-	-	-	C	38798998	T	C	38798998	2	2	712	1	0	0	0	0	0	0	0	1	16044	1422	50	5		5	TLR1	4	38798998	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	13408807	38798998	152355278	177	62515										
CORIN	0	genome.wustl.edu	37	chr4	47676508	47676508	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttggtctccttcttgacatGaagtctgaactacagaggga	10	8	3	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	47676508	47676508	G	C	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	nonsense	c.1259	p.S420*	0.234	pirsf_Peptidase_S1A_corin,superfamily_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	140	0	0	129	24	15.69	-	-	-	C	47676508	G	C	47676508	4	2	712	1	0	0	0	0	0	1	0	0	3782	1294	45	2	1921	2	CORIN	4	47676508	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8877510	47676508	143477768	178	62516										
SLAIN2	0	genome.wustl.edu	37	chr4	48424070	48424070	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tatggtagcatgaaagatgaCagttggaaagatggctgtta	13	3	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	48424070	48424070	C	T	SNP	SLAIN2	ENST00000264313	human	ensembl	69_37n	1	known	silent	c.1722	p.D574	1.000	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171	87	0	0	75	17	18.48	-	-	-	T	48424070	C	T	48424070	2	4	712	1	0	0	0	0	0	0	0	1	14455	477	17	4		4	SLAIN2	4	48424070	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	747562	48424070	142730206	179	62517										
PDGFRA	0	genome.wustl.edu	37	chr4	55161392	55161392	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagacatcgacatgatggatGacatcggcatagactcttca	9	9	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	55161392	55161392	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.3223	p.D1075N	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	85	0	0	103	18	14.88	-	-	-	A	55161392	G	A	55161392	3	1	712	1	0	0	0	0	1	0	0	0	11734	1290	45	2	3309	2	PDGFRA	4	55161392	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6737322	55161392	135992884	180	62518										
KIAA1211	0	genome.wustl.edu	37	chr4	57182678	57182678	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acccagagccaagtgagccgTccaaggaggaccaggagagc	14	12	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	57182678	57182678	T	C	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	missense	c.3010	p.S1004P	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	33	0	0	40	7	14.89	-	-	-	C	57182678	T	C	57182678	3	2	712	1	0	0	0	0	1	0	0	0	8267	1667	58	5	3028	5	KIAA1211	4	57182678	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2021286	57182678	133971598	181	62519										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68812185	68812185	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taccaaatactaggaagtgaAccaggagacctatggtcact	9	9	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	68812185	68812185	A	G	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	missense	c.116	p.V39A	0.827	pirsf_Pept_S1A_HAT/DESC1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	49	0	0	45	6	11.76	-	-	-	G	68812185	A	G	68812185	3	3	712	1	0	0	0	0	1	0	0	0	16334	43	2	5	1185	5	TMPRSS11A	4	68812185	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	11629507	68812185	122342091	182	62520										
ODAM	0	genome.wustl.edu	37	chr4	71066271	71066271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggaacaacctcagcaaacaGttccaaggtcacctcaacaa	7	13	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	71066271	71066271	G	A	SNP	ODAM	ENST00000396094	human	ensembl	69_37n	1	known	missense	c.481	p.V161I	0.000	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205	76	0	0	89	15	14.42	-	-	-	A	71066271	G	A	71066271	3	1	712	1	0	0	0	0	1	0	0	0	10897	1029	36	4	503	4	ODAM	4	71066271	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2254086	71066271	120088005	183	62521										
ENAM	0	genome.wustl.edu	37	chr4	71508990	71508990	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaaaactcaccataccttaGaggcaatacatgggatgaga	10	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	71508990	71508990	G	A	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.1847	p.R616K	0.009	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	62	0	0	72	15	17.24	-	-	-	A	71508990	G	A	71508990	3	1	712	1	0	0	0	0	1	0	0	0	5149	942	33	2	1877	2	ENAM	4	71508990	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	442719	71508990	119645286	184	62522										
ALB	0	genome.wustl.edu	37	chr4	74270073	74270073	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtaacctttatttcccttcTttttctctttagctcggctt	5	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	74270073	74270073	T	A	SNP	ALB	ENST00000295897	human	ensembl	69_37n	1	known	missense	c.29	p.L10H	1.000	pirsf_Serum_albumin_subgr	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Serum_albumin	-	no_errors	ALB	HGNC	ENSG00000163631	250	0	0	251	49	16.28	-	-	-	A	74270073	T	A	74270073	3	1	712	1	0	0	0	0	1	0	0	0	486	1609	56	5	31	5	ALB	4	74270073	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2761083	74270073	116884203	185	62523										
ALB	0	genome.wustl.edu	37	chr4	74285987	74285987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagggtaaaaaacttgttgCtgcaagtcaagctgccttag	10	8	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	74285987	74285987	C	T	SNP	ALB	ENST00000295897	human	ensembl	69_37n	1	known	missense	c.1802	p.A601V	0.100	superfamily_Serum_albumin-like,pirsf_Serum_albumin_subgr	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin_subgr,prints_Serum_albumin	-	no_errors	ALB	HGNC	ENSG00000163631	163	0	0	165	30	15.38	-	-	-	T	74285987	C	T	74285987	3	4	712	1	0	0	0	0	1	0	0	0	486	797	28	4	1856	4	ALB	4	74285987	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	15914	74285987	116868289	186	62524										
C4orf26	0	genome.wustl.edu	37	chr4	76489679	76489680	+	Frame_Shift_Ins	INS	-	-	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaacccaaacatactgaagcINSaaaaaaaagcctatccttca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	76489679	76489680	-	A	INS	C4orf26	ENST00000435974	human	ensembl	69_37n	1	putative	frame_shift_ins	c.467_468	p.S159fs	0.032:0.001	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792	44	0	0	23	15	39.47	-	-	-	A	76489680	-	A	76489679	7	5	712	1	0	1	1	0	0	0	0	0	2278	725	25	0		0	C4orf26	4	76489679	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	2203692	76489679	114664597	187	62525										
PLAC8	0	genome.wustl.edu	37	chr4	84026141	84026141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcagctgcaacttgacaccCaaggcacgggaaacaaaatg	9	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	84026141	84026141	C	T	SNP	PLAC8	ENST00000311507	human	ensembl	69_37n	-1	known	missense	c.151	p.G51R	0.042	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8	HGNC	ENSG00000145287	77	0	0	39	18	31.58	-	-	-	T	84026141	C	T	84026141	3	4	712	1	0	0	0	0	1	0	0	0	12089	594	21	4	204	4	PLAC8	4	84026141	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	7536462	84026141	107128135	188	62526										
ALPK1	0	genome.wustl.edu	37	chr4	113362145	113362145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcactccgttgatcagaaagTtttcactaccaattttggaa	6	9	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	113362145	113362145	T	G	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	1	known	missense	c.3611	p.V1204G	0.029	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	92	0	0	61	20	24.69	-	-	-	G	113362145	T	G	113362145	3	3	712	1	0	0	0	0	1	0	0	0	544	1725	60	5	3661	5	ALPK1	4	113362145	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	29336004	113362145	77792131	189	62527										
ANK2	0	genome.wustl.edu	37	chr4	114278752	114278752	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taattttgagggccaggacaTaaaaatggaatcccaacagg	10	7	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	114278752	114278752	T	G	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.8978	p.I2993R	0.008	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	58	0	0	36	9	20	-	-	-	G	114278752	T	G	114278752	3	3	712	1	0	0	0	0	1	0	0	0	621	1406	49	5	9193	5	ANK2	4	114278752	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	916607	114278752	76875524	190	62528										
TLL1	0	genome.wustl.edu	37	chr4	166914018	166914018	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctaccaacttatagacaggAtaagaagaattggctttggt	9	6	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	166914018	166914018	A	G	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	missense	c.343	p.I115V	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	193	0	0	108	35	24.48	-	-	-	G	166914018	A	G	166914018	3	3	712	1	0	0	0	0	1	0	0	0	16040	333	12	5	353	5	TLL1	4	166914018	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	52635266	166914018	24240258	191	62529										
GALNTL6	0	genome.wustl.edu	37	chr4	173961139	173961141	+	In_Frame_Del	DEL	AGA	AGA	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	catggattgcaaccccgcagAgaagaagattttcatggcca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	173961139	173961141	AGA	-	DEL	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	in_frame_del	c.1694_1696	p.K567in_frame_del	1.000:1.000:1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	146	0	0	87	26	23.01	-	-	-	-	173961141	AGA	-	173961139	7	5	712	1	0	1	0	1	0	0	0	0	6275	304	11	0	1740	0	GALNTL6	4	173961139	In_Frame_Del	DEL	AGA	TCGA-D8-A1XQ-01A-11D-A14K-09	7047121	173961139	17193137	192	62530										
SAP30	0	genome.wustl.edu	37	chr4	174295094	174295094	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttaattttttctaggttgAtttataccaattacaagtaa	5	4	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	174295094	174295094	A	T	SNP	SAP30	ENST00000296504	human	ensembl	69_37n	1	known	missense	c.446	p.D149V	1.000	NULL	NULL	-	no_errors	SAP30	HGNC	ENSG00000164105	98	0	0	48	16	25	-	-	-	T	174295094	A	T	174295094	3	4	712	1	0	0	0	0	1	0	0	0	13920	333	12	5	456	5	SAP30	4	174295094	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	333955	174295094	16859182	193	62531										
WWC2	0	genome.wustl.edu	37	chr4	184203902	184203902	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctctgatgaaattgtggctgAaaaagaggctgaagttaaat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	4	184203902	184203902	A	-	DEL	WWC2	ENST00000448232	human	ensembl	69_37n	1	known	frame_shift_del	c.2798	p.E935fs	0.092	NULL	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC2	HGNC	ENSG00000151718	77	0	0	38	11	20.75	-	-	-	-	184203902	A	-	184203902	7	5	712	1	0	1	0	1	0	0	0	0	17509	246	9	0	2796	0	WWC2	4	184203902	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	9908808	184203902	6950374	194	62532										
CDH10	0	genome.wustl.edu	37	chr5	24535881	24535881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aatgactctggcgctgttccCatatgaagggtcatcggcat	11	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	24535881	24535881	C	T	SNP	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	missense	c.577	p.G193R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	137	0	0	125	14	10.07	-	-	-	T	24535881	C	T	24535881	3	4	712	1	0	0	0	0	1	0	0	0	3125	594	21	4	1825	4	CDH10	5	24535881	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		24535881	156379379	195	62533										
C6	0	genome.wustl.edu	37	chr5	41181560	41181560	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attggtacactgaaagagctCcccccctgacttgagaatga							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	41181560	41181560	C	-	DEL	C6	ENST00000263413	human	ensembl	69_37n	-1	known	frame_shift_del	c.828	p.S277fs	0.000	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	187	0	0	151	32	17.49	-	-	-	-	41181560	C	-	41181560	7	5	712	1	0	1	0	1	0	0	0	0	2336	842	30	0	2024	0	C6	5	41181560	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	16645679	41181560	139733700	196	62534										
PIK3R1	0	genome.wustl.edu	37	chr5	67592114	67592114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttgcgagggaagcgagatGgcacttttcttgtccgggag	16	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	67592114	67592114	G	A	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1954	p.G652S	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	131	0	0	57	25	30.49	-	-	-	A	67592114	G	A	67592114	3	1	712	1	0	0	0	0	1	0	0	0	11992	1348	47	4	2114	4	PIK3R1	5	67592114	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	26410554	67592114	113323146	197	62535										
NAIP	0	genome.wustl.edu	37	chr5	70308556	70308556	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtcacaaaagtctttaaccTttttgcttcactgcgcattt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	70308556	70308556	T	-	DEL	NAIP	ENST00000194097	human	ensembl	69_37n	-1	known	frame_shift_del	c.187	p.R63fs	0.662	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_AAA+_ATPase,pfscan_NACHT_NTPase,pfscan_BIR	-	no_errors	NAIP	HGNC	ENSG00000249437	255	0	0	136	24	14.91	-	-	-	-	70308556	T	-	70308556	7	5	712	1	0	1	0	1	0	0	0	0	10219	1608	56	0	4080	0	NAIP	5	70308556	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2716442	70308556	110606704	198	62536										
F2R	0	genome.wustl.edu	37	chr5	76028611	76028611	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcattttactgtaacatgtaCgcctctatcttgctcatgac	6	11	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	76028611	76028611	C	T	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	silent	c.561	p.Y187	0.300	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	81	0	0	57	15	20.83	-	-	-	T	76028611	C	T	76028611	2	4	712	1	0	0	0	0	0	0	0	1	5380	547	19	1		1	F2R	5	76028611	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5720055	76028611	104886649	199	62537										
ANKRD34B	0	genome.wustl.edu	37	chr5	79855425	79855427	+	In_Frame_Del	DEL	AAG	AAG	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttttgccttgcaagcactAagaagaactttcagggtctc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	79855425	79855427	AAG	-	DEL	ANKRD34B	ENST00000338682	human	ensembl	69_37n	-1	known	in_frame_del	c.414_412	p.L138in_frame_del	0.798:0.968:0.944	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34B	HGNC	ENSG00000189127	141	0	0	63	13	17.11	-	-	-	-	79855427	AAG	-	79855425	7	5	712	1	0	1	0	1	0	0	0	0	662	349	13	0	1134	0	ANKRD34B	5	79855425	In_Frame_Del	DEL	AAG	TCGA-D8-A1XQ-01A-11D-A14K-09	3826814	79855425	101059835	200	62538										
GPR98	0	genome.wustl.edu	37	chr5	89939710	89939710	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgtcaatataacgattctgAaaaatgatgatcctcatggc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	89939710	89939710	A	-	DEL	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	frame_shift_del	c.2644	p.N883fs	0.898	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	146	0	0	96	27	21.6	-	-	-	-	89939710	A	-	89939710	7	5	712	1	0	1	0	1	0	0	0	0	6772	247	9	0	2698	0	GPR98	5	89939710	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10084285	89939710	90975550	201	62539										
PJA2	0	genome.wustl.edu	37	chr5	108691698	108691698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgaaatagcttcagcaactCctagtccatctgcaaagcca	6	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	108691698	108691698	C	T	SNP	PJA2	ENST00000361189	human	ensembl	69_37n	-1	known	missense	c.1682	p.G561E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	105	0	0	53	16	23.19	-	-	-	T	108691698	C	T	108691698	3	4	712	1	0	0	0	0	1	0	0	0	12036	855	30	2	460	2	PJA2	5	108691698	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	18751988	108691698	72223562	202	62540										
MAN2A1	0	genome.wustl.edu	37	chr5	109117120	109117120	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagtttggaactttatcagaTttttttgatgcgctggataa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	109117120	109117120	T	-	DEL	MAN2A1	ENST00000261483	human	ensembl	69_37n	1	known	frame_shift_del	c.1398	p.F468fs	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	99	0	0	68	22	24.44	-	-	-	-	109117120	T	-	109117120	7	5	712	1	0	1	0	1	0	0	0	0	9285	1490	52	0	1432	0	MAN2A1	5	109117120	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	425422	109117120	71798140	203	62541										
DMXL1	0	genome.wustl.edu	37	chr5	118465026	118465026	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttttactttgtccatggaagTttttttacagcaacttagaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	118465026	118465026	T	-	DEL	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	frame_shift_del	c.1223	p.L410fs	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	79	0	0	57	13	18.57	-	-	-	-	118465026	T	-	118465026	7	5	712	1	0	1	0	1	0	0	0	0	4630	1725	60	0	1261	0	DMXL1	5	118465026	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9347906	118465026	62450234	204	62542										
MEGF10	0	genome.wustl.edu	37	chr5	126705651	126705651	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cgctgtattgctccaaacacCtgtcagtgtgagcctggctg	11	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	126705651	126705651	C	A	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	silent	c.369	p.T123	1.000	smart_EGF-like	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	264	0	0	177	36	16.82	-	-	-	A	126705651	C	A	126705651	2	1	712	1	0	0	0	0	0	0	0	1	9531	668	24	4		4	MEGF10	5	126705651	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8240625	126705651	54209609	205	62543										
NRG2	0	genome.wustl.edu	37	chr5	139231232	139231232	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagggagtccacggaatcgtGatagggtggcgcggtggccc	18	9	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	139231232	139231232	G	A	SNP	NRG2	ENST00000545385	human	ensembl	69_37n	-1	known	missense	c.1735	p.H579Y	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like	-	no_errors	NRG2	HGNC	ENSG00000158458	32	0	0	24	12	33.33	-	-	-	A	139231232	G	A	139231232	3	1	712	1	0	0	0	0	1	0	0	0	10721	1290	45	2	831	2	NRG2	5	139231232	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	12525581	139231232	41684028	206	62544										
PCDHA4	0	genome.wustl.edu	37	chr5	140187923	140187923	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agacatgggtgtcaatgggcTggtcacctgctccttgacgt	13	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140187923	140187923	T	C	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.1151	p.L384P	0.034	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	92	0	0	64	21	24.71	-	-	-	C	140187923	T	C	140187923	3	2	712	1	0	0	0	0	1	0	0	0	11599	1580	55	5	1153	5	PCDHA4	5	140187923	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	956691	140187923	40727337	207	62545										
PCDHA8	0	genome.wustl.edu	37	chr5	140222530	140222530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagcgcgcgcgacgcgggcGtgccgcctctgggcagcaac	17	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140222530	140222530	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.1624	p.V542M	0.024	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	27	0	0	23	10	30.3	-	-	-	A	140222530	G	A	140222530	3	1	712	1	0	0	0	0	1	0	0	0	11603	1145	40	1	1626	1	PCDHA8	5	140222530	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	34607	140222530	40692730	208	62546										
PCDHB1	0	genome.wustl.edu	37	chr5	140432384	140432384	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgatagaggtgctaatatcCgacgttaatgacaatcctcc	8	9	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140432384	140432384	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	silent	c.1329	p.S443	0.725	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	53	0	0	43	10	18.87	-	-	-	T	140432384	C	T	140432384	2	4	712	1	0	0	0	0	0	0	0	1	11607	639	23	1		1	PCDHB1	5	140432384	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	209854	140432384	40482876	209	62547										
PCDHB8	0	genome.wustl.edu	37	chr5	140559922	140559922	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aatgagttccagttcctgaaAccagtattacctaatattca	5	9	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140559922	140559922	A	G	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	silent	c.2307	p.K769	0.887	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	73	0	0	70	17	19.32	-	-	-	G	140559922	A	G	140559922	2	3	712	1	0	0	0	0	0	0	0	1	11621	40	2	5		5	PCDHB8	5	140559922	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	127538	140559922	40355338	210	62548										
PCDHB10	0	genome.wustl.edu	37	chr5	140572988	140572988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttttgatgcctcagaaaataTtcgaacaacctttcaaatca	4	9	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140572988	140572988	T	C	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	missense	c.863	p.I288T	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	70	0	0	39	10	20.41	-	-	-	C	140572988	T	C	140572988	3	2	712	1	0	0	0	0	1	0	0	0	11608	1493	52	5	865	5	PCDHB10	5	140572988	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	13066	140572988	40342272	211	62549										
PCDHGB1	0	genome.wustl.edu	37	chr5	140731960	140731960	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctagcgatcgccctgcgcctGcgacgttcctccagcctcga	10	18	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140731960	140731960	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.2133	p.L711	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	58	0	0	52	11	17.19	-	-	-	A	140731960	G	A	140731960	2	1	712	1	0	0	0	0	0	0	0	1	11635	1306	46	4		4	PCDHGB1	5	140731960	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	158972	140731960	40183300	212	62550										
PCDHGA5	0	genome.wustl.edu	37	chr5	140744575	140744575	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccggtactctccggcaccacGcacatccgtgttacggtcct	9	17	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140744575	140744575	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	silent	c.678	p.T226	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	41	0	0	28	7	18.92	-	-	-	A	140744575	G	A	140744575	2	1	712	1	0	0	0	0	0	0	0	1	11630	1074	38	1		1	PCDHGA5	5	140744575	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	12615	140744575	40170685	213	62551										
PCDHGA12	0	genome.wustl.edu	37	chr5	140812003	140812003	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggaccagaacgacaatgcGcccgagatcctgtaccccgc	10	16	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	140812003	140812003	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	silent	c.1677	p.A559	0.015	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	69	0	0	76	24	23.76	-	-	-	A	140812003	G	A	140812003	2	1	712	1	0	0	0	0	0	0	0	1	11626	1074	38	1		1	PCDHGA12	5	140812003	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	67428	140812003	40103257	214	62552										
DPYSL3	0	genome.wustl.edu	37	chr5	146780284	146780284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcccagatgacagacatccGctcctccacaccattggtgc	8	16	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	146780284	146780284	G	A	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	missense	c.1081	p.R361W	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	166	0	0	142	26	15.38	-	-	-	A	146780284	G	A	146780284	3	1	712	1	0	0	0	0	1	0	0	0	4783	1086	38	1	651	1	DPYSL3	5	146780284	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5968281	146780284	34134976	215	62553										
GEMIN5	0	genome.wustl.edu	37	chr5	154308089	154308089	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgaccaaaaaagacttacccAaaacagctagataccagctg	6	11	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	154308089	154308089	A	C	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	missense	c.912	p.F304L	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	100	0	0	63	13	16.88	-	-	-	C	154308089	A	C	154308089	3	2	712	1	0	0	0	0	1	0	0	0	6383	127	5	5	3706	5	GEMIN5	5	154308089	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	7527805	154308089	26607171	216	62554										
ODZ2	0	genome.wustl.edu	37	chr5	167645722	167645722	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaatacactgtgagcctggTgacaggggagtacttgtaca	12	9	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	167645722	167645722	T	G	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.4826	p.V1609G	1.000	superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	59	0	0	36	15	29.41	-	-	-	G	167645722	T	G	167645722	3	3	712	1	0	0	0	0	1	0	0	0	10908	1696	59	5	4889	5	ODZ2	5	167645722	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	13337633	167645722	13269538	217	62555										
SLC34A1	0	genome.wustl.edu	37	chr5	176814816	176814816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgggctccaacatcggcaccTctgtcaccaacaccatcgtg	8	16	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	176814816	176814816	T	C	SNP	SLC34A1	ENST00000324417	human	ensembl	69_37n	1	known	missense	c.586	p.S196P	1.000	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	61	0	0	36	13	26.53	-	-	-	C	176814816	T	C	176814816	3	2	712	1	0	0	0	0	1	0	0	0	14656	1551	54	5	604	5	SLC34A1	5	176814816	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9169094	176814816	4100444	218	62556										
DBN1	0	genome.wustl.edu	37	chr5	176885610	176885610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctggcccccggggaggcgCctgtgcctgagggggctcct	18	15	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	176885610	176885610	C	T	SNP	DBN1	ENST00000292385	human	ensembl	69_37n	-1	known	missense	c.1231	p.A411T	0.085	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	29	0	0	14	11	44	-	-	-	T	176885610	C	T	176885610	3	4	712	1	0	0	0	0	1	0	0	0	4284	739	26	4	736	4	DBN1	5	176885610	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	70794	176885610	4029650	219	62557										
CNOT6	0	genome.wustl.edu	37	chr5	179996273	179996273	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcgcaacctcaaatccagTgttttgggagaatttggaac	9	9	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	179996273	179996273	T	C	SNP	CNOT6	ENST00000261951	human	ensembl	69_37n	1	known	silent	c.1191	p.S397	0.075	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300	112	0	0	54	14	20.59	-	-	-	C	179996273	T	C	179996273	2	2	712	1	0	0	0	0	0	0	0	1	3652	1693	59	5		5	CNOT6	5	179996273	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3110663	179996273	918987	220	62558										
CNOT6	0	genome.wustl.edu	37	chr5	180001174	180001174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctttcctgccccaagtcaacGgcatccaccttcctggcagg	8	17	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	5	180001174	180001174	G	A	SNP	CNOT6	ENST00000261951	human	ensembl	69_37n	1	known	missense	c.1648	p.G550S	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300	158	0	0	88	35	28.46	-	-	-	A	180001174	G	A	180001174	3	1	712	1	0	0	0	0	1	0	0	0	3652	1116	39	1	1690	1	CNOT6	5	180001174	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4901	180001174	914086	221	62559										
FOXC1	0	genome.wustl.edu	37	chr6	1611053	1611053	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acaagcagggctggcagaacAgcatccgccacaacctctcg	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	1611053	1611053	A	G	SNP	FOXC1	ENST00000380874	human	ensembl	69_37n	1	known	missense	c.373	p.S125G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598	66	0	0	88	63	41.72	-	-	-	G	1611053	A	G	1611053	3	3	712	1	0	0	0	0	1	0	0	0	6040	188	7	5	375	5	FOXC1	6	1611053	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09		1611053	169504014	222	62560										
SERPINB1	0	genome.wustl.edu	37	chr6	2840716	2840716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accatggccatagcagatgaAatgctgaagggagagatgaa	13	6	0	5			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	2840716	2840716	A	C	SNP	SERPINB1	ENST00000380739	human	ensembl	69_37n	-1	known	missense	c.105	p.I35M	0.998	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB1	HGNC	ENSG00000021355	62	0	0	130	26	16.67	-	-	-	C	2840716	A	C	2840716	3	2	712	1	0	0	0	0	1	0	0	0	14184	10	1	5	1058	5	SERPINB1	6	2840716	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1229663	2840716	168274351	223	62561										
HIST1H2BA	0	genome.wustl.edu	37	chr6	25727450	25727450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agcagtgcgcttgctactgcCgggagagctggctaaacatg	14	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	25727450	25727450	C	T	SNP	HIST1H2BA	ENST00000274764	human	ensembl	69_37n	1	known	missense	c.314	p.P105L	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BA	HGNC	ENSG00000146047	305	0	0	434	55	11.25	-	-	-	T	25727450	C	T	25727450	3	4	712	1	0	0	0	0	1	0	0	0	7191	652	23	1	316	1	HIST1H2BA	6	25727450	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	22886734	25727450	145387617	224	62562										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056588	26056590	+	In_Frame_Del	DEL	CTT	CTT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccccagcctttttggccgcCttcttctttacaggggcctt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	26056588	26056590	CTT	-	DEL	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	in_frame_del	c.69_67	p.K23in_frame_del	1.000:1.000:1.000	prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	23	0	0	30	5	14.29	-	-	-	-	26056590	CTT	-	26056588	7	5	712	1	0	1	0	1	0	0	0	0	7175	680	24	0	576	0	HIST1H1C	6	26056588	In_Frame_Del	DEL	CTT	TCGA-D8-A1XQ-01A-11D-A14K-09	329138	26056588	145058479	225	62563										
HIST1H2AL	0	genome.wustl.edu	37	chr6	27833136	27833136	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttatcgtttcttcgtcatgTcgggacgcggcaagcaggga	13	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	27833136	27833136	T	A	SNP	HIST1H2AL	ENST00000357320	human	ensembl	69_37n	1	known	missense	c.4	p.S2T	0.999	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374	43	0	0	62	25	28.74	-	-	-	A	27833136	T	A	27833136	3	1	712	1	0	0	0	0	1	0	0	0	7189	1667	58	5	6	5	HIST1H2AL	6	27833136	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1776548	27833136	143281931	226	62564										
OR2B3	0	genome.wustl.edu	37	chr6	29054990	29054990	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctgagaagccaagtagtatAaactcttttggggagctctc	10	8	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	29054990	29054990	A	G	SNP	OR2B3	ENST00000377173	human	ensembl	69_37n	-1	known	silent	c.36	p.F12	0.946	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703	73	0	0	100	15	13.04	-	-	-	G	29054990	A	G	29054990	2	3	712	1	0	0	0	0	0	0	0	1	11063	359	13	5		5	OR2B3	6	29054990	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1221854	29054990	142060077	227	62565										
HLA-C	0	genome.wustl.edu	37	chr6	31237303	31237303	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcagctccctccttttccacCtgtgggaagaaaatgcccta	8	14	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	31237303	31237303	C	A	SNP	HLA-C	ENST00000539307	human	ensembl	69_37n	-1	known	splice_site	c.1127-1	e6-1	0.125	-	-	-	no_errors	HLA-C	HGNC	ENSG00000204525	189	0	0	208	31	12.92	-	-	-	A	31237303	C	A	31237303	5	1	712	1	0	0	0	0	0	0	1	0	7248	695	24	4	97	4	HLA-C	6	31237303	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2182313	31237303	139877764	228	62566										
ZNF76	0	genome.wustl.edu	37	chr6	35261543	35261543	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcaggtcagcctgtccccgGaagacctgcaggccctgggg	16	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	35261543	35261543	G	C	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	1	known	missense	c.1345	p.E449Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029	63	0	0	83	17	17	-	-	-	C	35261543	G	C	35261543	3	2	712	1	0	0	0	0	1	0	0	0	18229	1175	41	2	1387	2	ZNF76	6	35261543	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4024240	35261543	135853524	229	62567										
DAAM2	0	genome.wustl.edu	37	chr6	39866693	39866693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggtgggcaacctcaggaggGgcctgagagcggtggaggtg	21	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	39866693	39866693	G	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	missense	c.2659	p.G887S	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	139	0	0	188	56	22.95	-	-	-	A	39866693	G	A	39866693	3	1	712	1	0	0	0	0	1	0	0	0	4248	1232	43	4	2741	4	DAAM2	6	39866693	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4605150	39866693	131248374	230	62568										
CUL9	0	genome.wustl.edu	37	chr6	43172796	43172796	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cgggcagccttcatgctggcTctgcgcagtggcttctctgg	14	13	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	43172796	43172796	T	C	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	silent	c.4575	p.A1525	0.973	pfam_Cullin_N	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	77	0	0	80	16	16.67	-	-	-	C	43172796	T	C	43172796	2	2	712	1	0	0	0	0	0	0	0	1	4092	1538	54	5		5	CUL9	6	43172796	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3306103	43172796	127942271	231	62569										
ABCC10	0	genome.wustl.edu	37	chr6	43403588	43403588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggccaaagtgtccttggacCggatccagcttttcctcgac	10	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	43403588	43403588	C	T	SNP	ABCC10	ENST00000372530	human	ensembl	69_37n	1	known	missense	c.1708	p.R570W	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC10	HGNC	ENSG00000124574	104	0	0	161	29	15.26	-	-	-	T	43403588	C	T	43403588	3	4	712	1	0	0	0	0	1	0	0	0	50	643	23	1	1589	1	ABCC10	6	43403588	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	230792	43403588	127711479	232	62570										
TJAP1	0	genome.wustl.edu	37	chr6	43471369	43471369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgtgtctgtaggagcggtaCcggctggactgcaacctggc	15	11	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	43471369	43471369	C	T	SNP	TJAP1	ENST00000454762	human	ensembl	69_37n	1	known	missense	c.346	p.P116S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TJAP1	HGNC	ENSG00000137221	43	0	0	87	12	12.12	-	-	-	T	43471369	C	T	43471369	3	4	712	1	0	0	0	0	1	0	0	0	16023	518	18	4	530	4	TJAP1	6	43471369	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	67781	43471369	127643698	233	62571										
TDRD6	0	genome.wustl.edu	37	chr6	46658417	46658417	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagcatgtcaatgtaacatTtgtagattatggagacagag	12	4	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	46658417	46658417	T	A	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.2552	p.F851Y	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	80	0	0	88	13	12.87	-	-	-	A	46658417	T	A	46658417	3	1	712	1	0	0	0	0	1	0	0	0	15829	1841	64	5	2554	5	TDRD6	6	46658417	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3187048	46658417	124456650	234	62572										
PKHD1	0	genome.wustl.edu	37	chr6	51900493	51900493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctaacaccttccaaactagAgcctcggatggtggcccaga	10	13	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	51900493	51900493	A	G	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.3124	p.S1042P	0.486	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	52	0	0	45	6	11.76	-	-	-	G	51900493	A	G	51900493	3	3	712	1	0	0	0	0	1	0	0	0	12045	304	11	5	9299	5	PKHD1	6	51900493	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5242076	51900493	119214574	235	62573										
FAM83B	0	genome.wustl.edu	37	chr6	54805054	54805054	+	Missense_Mutation	SNP	T	T	C													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtctcagtgtggcgtcctcaTcacgggaaggctatgtaagc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	54805054	54805054	T	C	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	missense	c.1285	p.S429P	0.701	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	56	0	0	78	21	21.21	-	-	-	C	54805054	T	C	54805054	3	2	712	1	0	0	0	0	1	0	0	0	5679	1435	50	5	1299	5	FAM83B	6	54805054	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2904561	54805054	116310013	236	62574	456	2								
FAM83B	0	genome.wustl.edu	37	chr6	54805055	54805055	+	Nonsense_Mutation	SNP	C	C	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcagtgtggcgtcctcatCacgggaaggctatgtaagcc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	54805055	54805055	C	A	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	1	known	nonsense	c.1286	p.S429*	0.365	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	54	0	0	79	21	21	-	-	-	A	54805055	C	A	54805055	4	1	712	1	0	0	0	0	0	1	0	0	5679	838	29	2	1300	2	FAM83B	6	54805055	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1	54805055	116310012	237	62575	456	2								
COL21A1	0	genome.wustl.edu	37	chr6	55925688	55925688	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgaaagaagcagaatacataCgggcttcccatccaaacctg	8	11	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	55925688	55925688	C	T	SNP	COL21A1	ENST00000244728	human	ensembl	69_37n	-1	known	splice_site	c.2352+1	e25+1	0.998	-	-	-	no_errors	COL21A1	HGNC	ENSG00000124749	56	0	0	64	12	15.79	-	-	-	T	55925688	C	T	55925688	5	4	712	1	0	0	0	0	0	0	1	0	3710	550	19	1	540	1	COL21A1	6	55925688	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1120633	55925688	115189379	238	62576										
DST	0	genome.wustl.edu	37	chr6	56473919	56473919	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttagctttacttagttctTtgagttggcacagaatttgt	8	7	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	56473919	56473919	T	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.5408	p.K1803R	0.194	pfam_Plectin_repeat,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	146	0	0	245	36	12.81	-	-	-	C	56473919	T	C	56473919	3	2	712	1	0	0	0	0	1	0	0	0	4818	1856	64	5		5	DST	6	56473919	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	548231	56473919	114641148	239	62577										
COL19A1	0	genome.wustl.edu	37	chr6	70859922	70859922	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaaagccaggcctgccaggCcccccaggtgacccggtatg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	70859922	70859922	C	-	DEL	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	frame_shift_del	c.2022	p.P676fs	1.000	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	59	0	0	122	23	15.75	-	-	-	-	70859922	C	-	70859922	7	5	712	1	0	1	0	1	0	0	0	0	3706	726	26	0	2136	0	COL19A1	6	70859922	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	14386003	70859922	100255145	240	62578										
SMAP1	0	genome.wustl.edu	37	chr6	71508378	71508378	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agaaagaaaaggaaaaaaaaAaggaagagaaaaagagagaa	11	0	0	5			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	71508378	71508378	A	C	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	missense	c.514	p.K172Q	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	138	0	0	112	97	46.41	-	-	-	C	71508378	A	C	71508378	3	2	712	1	0	0	0	0	1	0	0	0	14855	15	1	5	536	5	SMAP1	6	71508378	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	648456	71508378	99606689	241	62579										
HACE1	0	genome.wustl.edu	37	chr6	105239507	105239507	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttaaaaggctcttcatttGagcatcataattgctagaga	7	8	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	105239507	105239507	G	C	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	missense	c.946	p.Q316E	1.000	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	74	0	0	34	70	67.31	-	-	-	C	105239507	G	C	105239507	3	2	712	1	0	0	0	0	1	0	0	0	6991	1299	45	2	1839	2	HACE1	6	105239507	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	33731129	105239507	65875560	242	62580										
AIM1	0	genome.wustl.edu	37	chr6	106968729	106968729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaacagtgagcctctggtgAtgccggaaatcaatgacaaa	12	8	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	106968729	106968729	A	G	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.2422	p.M808V	0.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	103	0	0	49	74	60.16	-	-	-	G	106968729	A	G	106968729	3	3	712	1	0	0	0	0	1	0	0	0	430	333	12	5	2428	5	AIM1	6	106968729	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1729222	106968729	64146338	243	62581										
AIM1	0	genome.wustl.edu	37	chr6	106968796	106968796	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cattaagagatcgagactagAaaaaagtgcacttttctcaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	106968796	106968796	A	-	DEL	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	frame_shift_del	c.2489	p.S832fs	1.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	89	0	0	66	8	10.81	-	-	-	-	106968796	A	-	106968796	7	5	712	1	0	1	0	1	0	0	0	0	430	246	9	0	2495	0	AIM1	6	106968796	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	67	106968796	64146271	244	62582										
GOPC	0	genome.wustl.edu	37	chr6	117900219	117900219	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agttcagatttcagatccacCaactgtgccttataaagaaa	6	9	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	117900219	117900219	C	G	SNP	GOPC	ENST00000368498	human	ensembl	69_37n	-1	known	missense	c.294	p.L98F	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932	88	0	0	90	10	10	-	-	-	G	117900219	C	G	117900219	3	3	712	1	0	0	0	0	1	0	0	0	6622	593	21	4	1126	4	GOPC	6	117900219	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	10931423	117900219	53214848	245	62583										
MAN1A1	0	genome.wustl.edu	37	chr6	119628074	119628074	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tactcaccaaacaaactgctTgaatggcctccttttgatat	5	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	119628074	119628074	T	C	SNP	MAN1A1	ENST00000368468	human	ensembl	69_37n	-1	known	silent	c.687	p.S229	0.986	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	224	0	0	224	37	14.18	-	-	-	C	119628074	T	C	119628074	2	2	712	1	0	0	0	0	0	0	0	1	9281	1799	63	5		5	MAN1A1	6	119628074	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1727855	119628074	51486993	246	62584										
KIAA1244	0	genome.wustl.edu	37	chr6	138599672	138599672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agacagcctctacacagctgCacactgcgccctgctcctca	7	18	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	138599672	138599672	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.2213	p.A738V	0.976	superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	88	0	0	93	20	17.7	-	-	-	T	138599672	C	T	138599672	3	4	712	1	0	0	0	0	1	0	0	0	8269	710	25	4	2263	4	KIAA1244	6	138599672	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	18971598	138599672	32515395	247	62585										
SYNE1	0	genome.wustl.edu	37	chr6	152532698	152532698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgagtgcaaaatctgctgaCgactgaacatctcggcttga	10	9	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	6	152532698	152532698	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.22520	p.R7507H	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	84	0	0	63	11	14.86	-	-	-	T	152532698	C	T	152532698	3	4	712	1	0	0	0	0	1	0	0	0	15537	536	19	1	4038	1	SYNE1	6	152532698	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	13933026	152532698	18582369	248	62586										
PMS2	0	genome.wustl.edu	37	chr7	6026963	6026963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tagggtcactgggtccgtgaCtggaactcactgcctctttc	11	12	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	6026963	6026963	C	G	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	missense	c.1433	p.S478T	0.000	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	102	0	0	38	83	68.6	-	-	-	G	6026963	C	G	6026963	3	3	712	1	0	0	0	0	1	0	0	0	12217	565	20	4	1175	4	PMS2	7	6026963	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		6026963	153111700	249	62587										
ABCB5	0	genome.wustl.edu	37	chr7	20668355	20668355	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcacactcatgatcctgggTatactggcatcactggtcaa	8	11	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	20668355	20668355	T	C	SNP	ABCB5	ENST00000404938	human	ensembl	69_37n	1	putative	silent	c.153	p.G51	0.982	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	159	1	0.62	171	34	16.5	-	-	-	C	20668355	T	C	20668355	2	2	712	1	0	0	0	0	0	0	0	1	44	1625	57	5		5	ABCB5	7	20668355	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	14641392	20668355	138470308	250	62588										
NPVF	0	genome.wustl.edu	37	chr7	25266578	25266578	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgtactcatcttaataacaTtttttggtccccaatctttt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	25266578	25266578	T	-	DEL	NPVF	ENST00000222674	human	ensembl	69_37n	-1	known	frame_shift_del	c.206	p.N69fs	0.001	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	144	0	0	101	27	21.09	-	-	-	-	25266578	T	-	25266578	7	5	712	1	0	1	0	1	0	0	0	0	10678	1493	52	0	392	0	NPVF	7	25266578	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	4598223	25266578	133872085	251	62589										
INMT	0	genome.wustl.edu	37	chr7	30795207	30795207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtagccttgatgcctaccgcGctgccctgtgcaaccttgcc	10	16	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	30795207	30795207	G	A	SNP	INMT	ENST00000013222	human	ensembl	69_37n	1	known	missense	c.532	p.A178T	0.000	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644	63	0	0	47	11	18.64	-	-	-	A	30795207	G	A	30795207	3	1	712	1	0	0	0	0	1	0	0	0	7799	1087	38	1	542	1	INMT	7	30795207	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5528629	30795207	128343456	252	62590										
GLI3	0	genome.wustl.edu	37	chr7	42007203	42007203	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtagaactcaccatttcctaTgagaggagagaccgcagggg	13	9	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	42007203	42007203	T	G	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.2422	p.I808L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	195	0	0	92	28	23.33	-	-	-	G	42007203	T	G	42007203	3	3	712	1	0	0	0	0	1	0	0	0	6491	1464	51	5	2328	5	GLI3	7	42007203	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	11211996	42007203	117131460	253	62591										
MYL7	0	genome.wustl.edu	37	chr7	44179111	44179111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagtattgaaggggctgggCagcctcacctcagctggaga	15	9	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	44179111	44179111	C	T	SNP	MYL7	ENST00000446581	human	ensembl	69_37n	-1	novel	silent	c.216	p.L72	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	MYL7	HGNC	ENSG00000106631	66	0	0	47	9	15.52	-	-	-	T	44179111	C	T	44179111	2	4	712	1	0	0	0	0	0	0	0	1	10125	725	25	4		4	MYL7	7	44179111	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2171908	44179111	114959552	254	62592										
PCLO	0	genome.wustl.edu	37	chr7	82582944	82582944	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggagatgcaactgttaacTtttttttaggaagaatagtt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	82582944	82582944	T	-	DEL	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_del	c.7325	p.K2442fs	0.984	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	95	0	0	106	29	21.48	-	-	-	-	82582944	T	-	82582944	7	5	712	1	0	1	0	1	0	0	0	0	11656	1609	56	0	8204	0	PCLO	7	82582944	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	38403833	82582944	76555719	255	62593										
SEMA3A	0	genome.wustl.edu	37	chr7	83823823	83823823	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atttcagccttggcacattgTtcttcccattctgatagttt	6	10	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	83823823	83823823	T	C	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.80	p.N27S	1.000	superfamily_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	233	0	0	214	41	16.02	-	-	-	C	83823823	T	C	83823823	3	2	712	1	0	0	0	0	1	0	0	0	14112	1725	60	5	2303	5	SEMA3A	7	83823823	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1240879	83823823	75314840	256	62594										
TFPI2	0	genome.wustl.edu	37	chr7	93516141	93516141	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attaagaatgtttaaaattgCttcttccgaattttccggat	6	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	93516141	93516141	C	T	SNP	TFPI2	ENST00000222543	human	ensembl	69_37n	-1	known	silent	c.699	p.K233	0.064	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	162	0	0	106	14	11.67	-	-	-	T	93516141	C	T	93516141	2	4	712	1	0	0	0	0	0	0	0	1	15904	796	28	4		4	TFPI2	7	93516141	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	9692318	93516141	65622522	257	62595										
PON1	0	genome.wustl.edu	37	chr7	94935634	94935634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccaattagcatgcttttcaTacacatgaatcttatgagcc	5	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	94935634	94935634	T	C	SNP	PON1	ENST00000222381	human	ensembl	69_37n	-1	known	missense	c.743	p.Y248C	1.000	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421	101	0	0	84	19	18.45	-	-	-	C	94935634	T	C	94935634	3	2	712	1	0	0	0	0	1	0	0	0	12322	1406	49	5	336	5	PON1	7	94935634	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1419493	94935634	64203029	258	62596										
DYNC1I1	0	genome.wustl.edu	37	chr7	95665026	95665026	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aataacttcgtggttggcagTgaggaaggtacagtctacac	12	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	95665026	95665026	T	C	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	silent	c.1377	p.S459	0.313	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	133	0	0	116	29	20	-	-	-	C	95665026	T	C	95665026	2	2	712	1	0	0	0	0	0	0	0	1	4877	1693	59	5		5	DYNC1I1	7	95665026	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	729392	95665026	63473637	259	62597										
TECPR1	0	genome.wustl.edu	37	chr7	97858423	97858423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atagccgatgccccacaccaCgccccggctgttggcctcca	9	19	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	97858423	97858423	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	69_37n	-1	known	missense	c.2341	p.V781M	0.993	smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356	19	0	0	19	5	20.83	-	-	-	T	97858423	C	T	97858423	3	4	712	1	0	0	0	0	1	0	0	0	15838	536	19	1	1203	1	TECPR1	7	97858423	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2193397	97858423	61280240	260	62598										
TRRAP	0	genome.wustl.edu	37	chr7	98524910	98524910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcatgtctgctgtcattaaGgacctgcggcccagcgccct	10	14	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	98524910	98524910	G	T	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.3096	p.K1032N	0.977	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	42	0	0	36	7	16.28	-	-	-	T	98524910	G	T	98524910	3	4	712	1	0	0	0	0	1	0	0	0	16697	991	35	4	3182	4	TRRAP	7	98524910	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	666487	98524910	60613753	261	62599										
GPC2	0	genome.wustl.edu	37	chr7	99769785	99769785	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcaccccaatggactcggcCgtcagctcaaaggaaaaggg	11	12	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	99769785	99769785	C	T	SNP	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	silent	c.948	p.T316	0.227	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	55	0	0	49	10	16.95	-	-	-	T	99769785	C	T	99769785	2	4	712	1	0	0	0	0	0	0	0	1	6648	639	23	1		1	GPC2	7	99769785	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1244875	99769785	59368878	262	62600										
SLC12A9	0	genome.wustl.edu	37	chr7	100453404	100453404	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tacctggctaacgtctgtggCtgtgccgtctccctcctggg	12	14	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	100453404	100453404	C	A	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	1	known	silent	c.393	p.G131	0.998	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	162	0	0	123	32	20.65	-	-	-	A	100453404	C	A	100453404	2	1	712	1	0	0	0	0	0	0	0	1	14479	784	28	4		4	SLC12A9	7	100453404	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	683619	100453404	58685259	263	62601										
MUC17	0	genome.wustl.edu	37	chr7	100681430	100681430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcaccctttcagcaactcctGttgacaccagcacacctgtg	7	16	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	100681430	100681430	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6733	p.V2245I	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	244	0	0	210	37	14.98	-	-	-	A	100681430	G	A	100681430	3	1	712	1	0	0	0	0	1	0	0	0	10046	1377	48	4	6743	4	MUC17	7	100681430	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	228026	100681430	58457233	264	62602										
SLC26A5	0	genome.wustl.edu	37	chr7	103019728	103019728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctatacaagtcgctatttgCatagtaaattggtgcattta	8	6	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	103019728	103019728	C	T	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	missense	c.1639	p.A547T	1.000	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	190	0	0	170	36	17.48	-	-	-	T	103019728	C	T	103019728	3	4	712	1	0	0	0	0	1	0	0	0	14609	710	25	4	656	4	SLC26A5	7	103019728	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2338298	103019728	56118935	265	62603										
CTTNBP2	0	genome.wustl.edu	37	chr7	117375131	117375131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaagcagttctcatgaaagtAataacattcggacagtccat	7	8	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	117375131	117375131	A	G	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.3712	p.Y1238H	0.999	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	51	0	0	60	13	17.81	-	-	-	G	117375131	A	G	117375131	3	3	712	1	0	0	0	0	1	0	0	0	4077	362	13	5	1311	5	CTTNBP2	7	117375131	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	14355403	117375131	41763532	266	62604										
WASL	0	genome.wustl.edu	37	chr7	123332759	123332759	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtggagggactgctacacttGgcctggaaggaggcggtggt	19	7	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	123332759	123332759	G	T	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	missense	c.989	p.P330Q	1.000	NULL	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	64	0	0	79	18	18.56	-	-	-	T	123332759	G	T	123332759	3	4	712	1	0	0	0	0	1	0	0	0	17353	1348	47	4	540	4	WASL	7	123332759	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5957628	123332759	35805904	267	62605										
TMEM209	0	genome.wustl.edu	37	chr7	129821553	129821553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggcactaatattgtctcatTgatccactagaagaaataag	7	7	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	129821553	129821553	T	C	SNP	TMEM209	ENST00000397622	human	ensembl	69_37n	-1	known	missense	c.1030	p.N344D	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842	162	0	0	163	44	21.26	-	-	-	C	129821553	T	C	129821553	3	2	712	1	0	0	0	0	1	0	0	0	16229	1812	63	5	683	5	TMEM209	7	129821553	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	6488794	129821553	29317110	268	62606										
PLXNA4	0	genome.wustl.edu	37	chr7	131866334	131866334	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcaggacccagagcgagggCgggcgcctgacaggtcatct	16	12	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	131866334	131866334	C	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.3298	p.A1100S	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	54	0	0	55	7	10.45	-	-	-	A	131866334	C	A	131866334	3	1	712	1	0	0	0	0	1	0	0	0	12196	768	27	3	2446	3	PLXNA4	7	131866334	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2044781	131866334	27272329	269	62607										
ATP6V0A4	0	genome.wustl.edu	37	chr7	138418883	138418883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgcatcaagaaacttacatGtgattgaaaaggctgaggat	11	5	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	138418883	138418883	G	A	SNP	ATP6V0A4	ENST00000310018	human	ensembl	69_37n	-1	known	silent	c.1689	p.H563	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929	123	0	0	102	28	21.54	-	-	-	A	138418883	G	A	138418883	2	1	712	1	0	0	0	0	0	0	0	1	1174	1368	48	4		4	ATP6V0A4	7	138418883	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6552549	138418883	20719780	270	62608										
UBN2	0	genome.wustl.edu	37	chr7	138967905	138967905	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcccaagaaaccatctgcCtcgacgactcactagatgaa	7	14	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	138967905	138967905	C	A	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.2254	p.L752I	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	115	0	0	77	18	18.95	-	-	-	A	138967905	C	A	138967905	3	1	712	1	0	0	0	0	1	0	0	0	16990	681	24	4	2312	4	UBN2	7	138967905	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	549022	138967905	20170758	271	62609										
OR9A4	0	genome.wustl.edu	37	chr7	141618962	141618962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcagacaatatatttgtctgCctgtgttgtccagctcttct	8	10	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	141618962	141618962	C	G	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	missense	c.287	p.A96G	0.006	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	108	0	0	63	23	26.74	-	-	-	G	141618962	C	G	141618962	3	3	712	1	0	0	0	0	1	0	0	0	11322	739	26	4	289	4	OR9A4	7	141618962	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2651057	141618962	17519701	272	62610										
EPHB6	0	genome.wustl.edu	37	chr7	142567573	142567573	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgactttacccctcagggcCcaagttgtttgcttcgctgg	10	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	142567573	142567573	C	G	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	1	known	missense	c.2461	p.P821A	0.001	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	74	0	0	60	16	21.05	-	-	-	G	142567573	C	G	142567573	3	3	712	1	0	0	0	0	1	0	0	0	5215	623	22	4	2511	4	EPHB6	7	142567573	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	948611	142567573	16571090	273	62611										
OR2A14	0	genome.wustl.edu	37	chr7	143826923	143826923	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcagaaaggccttctccaccTgctcctcccacctttgcgtg	8	17	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	143826923	143826923	T	C	SNP	OR2A14	ENST00000408899	human	ensembl	69_37n	1	known	missense	c.718	p.C240R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938	90	0	0	114	23	16.79	-	-	-	C	143826923	T	C	143826923	3	2	712	1	0	0	0	0	1	0	0	0	11049	1580	55	5	720	5	OR2A14	7	143826923	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1259350	143826923	15311740	274	62612										
EZH2	0	genome.wustl.edu	37	chr7	148525867	148525868	+	Frame_Shift_Del	DEL	TC	TC	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagatctttctgcttttctTctctttcttcaggatcgtct							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	148525867	148525868	TC	-	DEL	EZH2	ENST00000320356	human	ensembl	69_37n	-1	known	frame_shift_del	c.590_589	p.E197fs	1.000:1.000	smart_SANT/Myb	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462	234	0	0	132	27	16.88	-	-	-	-	148525868	TC	-	148525867	7	5	712	1	0	1	0	1	0	0	0	0	5371	1783	62	0	1725	0	EZH2	7	148525867	Frame_Shift_Del	DEL	TC	TCGA-D8-A1XQ-01A-11D-A14K-09	4698944	148525867	10612796	275	62613										
ZNF862	0	genome.wustl.edu	37	chr7	149559204	149559204	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccctcccaacaggatacagTgaggaagctctgctggagga	12	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	7	149559204	149559204	T	C	SNP	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	silent	c.2955	p.S985	0.741	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	26	0	0	21	4	16	-	-	-	C	149559204	T	C	149559204	2	2	712	1	0	0	0	0	0	0	0	1	18288	1693	59	5		5	ZNF862	7	149559204	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1033337	149559204	9579459	276	62614										
CSMD1	0	genome.wustl.edu	37	chr8	3443744	3443744	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttttagatccctggagcacgTaattgtcctcacatgaaaac	7	10	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	3443744	3443744	T	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.1139	p.Y380F	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	65	0	0	52	12	18.75	-	-	-	A	3443744	T	A	3443744	3	1	712	1	0	0	0	0	1	0	0	0	3976	1638	57	5	9619	5	CSMD1	8	3443744	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09		3443744	142920278	277	62615										
ANGPT2	0	genome.wustl.edu	37	chr8	6378767	6378767	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gatcatgttgctgcttctgaAgaactgaattattcaccgtg	9	8	3	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	6378767	6378767	A	G	SNP	ANGPT2	ENST00000325203	human	ensembl	69_37n	-1	known	missense	c.731	p.L244P	0.928	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT2	HGNC	ENSG00000091879	151	0	0	97	25	20.49	-	-	-	G	6378767	A	G	6378767	3	3	712	1	0	0	0	0	1	0	0	0	611	72	3	5	783	5	ANGPT2	8	6378767	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2935023	6378767	139985255	278	62616										
DOK2	0	genome.wustl.edu	37	chr8	21768297	21768297	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccagcccggagggtataggAcccccgcaggtggcacctct	13	16	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	21768297	21768297	A	G	SNP	DOK2	ENST00000276420	human	ensembl	69_37n	-1	known	missense	c.505	p.S169P	0.002	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443	47	0	0	33	6	15.38	-	-	-	G	21768297	A	G	21768297	3	3	712	1	0	0	0	0	1	0	0	0	4732	275	10	5	741	5	DOK2	8	21768297	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	15389530	21768297	124595725	279	62617										
LGI3	0	genome.wustl.edu	37	chr8	22006268	22006268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtagaggctggtggcgcctGccttggagctgtcagccacg	17	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	22006268	22006268	G	A	SNP	LGI3	ENST00000306317	human	ensembl	69_37n	-1	known	missense	c.1052	p.A351V	0.999	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481	47	0	0	31	4	11.43	-	-	-	A	22006268	G	A	22006268	3	1	712	1	0	0	0	0	1	0	0	0	8808	1319	46	4	598	4	LGI3	8	22006268	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	237971	22006268	124357754	280	62618										
PPP3CC	0	genome.wustl.edu	37	chr8	22355573	22355573	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaaacattgtttctgcttcgGggaaatcatgaatgcaggca	10	7	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	22355573	22355573	G	C	SNP	PPP3CC	ENST00000521651	human	ensembl	69_37n	1	putative	missense	c.62	p.G21A	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP3CC	HGNC	ENSG00000120910	234	0	0	190	38	16.67	-	-	-	C	22355573	G	C	22355573	3	2	712	1	0	0	0	0	1	0	0	0	12476	1219	43	4	446	4	PPP3CC	8	22355573	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	349305	22355573	124008449	281	62619										
KIAA1967	0	genome.wustl.edu	37	chr8	22472975	22472975	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcagtacctgcagccgggaCccccccggcggcttcagaca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	22472975	22472975	C	-	DEL	KIAA1967	ENST00000308511	human	ensembl	69_37n	1	known	frame_shift_del	c.1243	p.R417fs	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	KIAA1967	HGNC	ENSG00000158941	25	0	0	28	5	15.15	-	-	-	-	22472975	C	-	22472975	7	5	712	1	0	1	0	1	0	0	0	0	8317	507	18	0	1285	0	KIAA1967	8	22472975	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	117402	22472975	123891047	282	62620										
GSR	0	genome.wustl.edu	37	chr8	30539473	30539473	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagtcccactgtcccaataGgggggtggctgaagaccaca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	30539473	30539473	G	-	DEL	GSR	ENST00000221130	human	ensembl	69_37n	-1	known	frame_shift_del	c.1259	p.P420fs	1.000	pfam_Pyr_nucl-diS_OxRdtase_dimer,superfamily_FAD/NAD-linked_Rdtase_dimer,tigrfam_Glutathione_Rdtase_euk/bac	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	-	no_errors	GSR	HGNC	ENSG00000104687	134	0	0	89	21	19.09	-	-	-	-	30539473	G	-	30539473	7	5	712	1	0	1	0	1	0	0	0	0	6879	1000	35	0	321	0	GSR	8	30539473	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8066498	30539473	115824549	283	62621										
DUSP26	0	genome.wustl.edu	37	chr8	33451226	33451226	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcattgaggacgtgcgtgatGcccaggcggcgaagctcccg	16	12	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	33451226	33451226	G	T	SNP	DUSP26	ENST00000256261	human	ensembl	69_37n	-1	known	silent	c.261	p.G87	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878	39	0	0	20	24	54.55	-	-	-	T	33451226	G	T	33451226	2	4	712	1	0	0	0	0	0	0	0	1	4858	1306	46	4		4	DUSP26	8	33451226	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2911753	33451226	112912796	284	62622										
HTRA4	0	genome.wustl.edu	37	chr8	38832596	38832596	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggaattacaacttcatcgcCgcggtggtggagaaggtggc	15	8	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	38832596	38832596	C	G	SNP	HTRA4	ENST00000302495	human	ensembl	69_37n	1	known	silent	c.513	p.A171	0.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495	78	0	0	32	53	62.35	-	-	-	G	38832596	C	G	38832596	2	3	712	1	0	0	0	0	0	0	0	1	7510	639	23	3		3	HTRA4	8	38832596	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5381370	38832596	107531426	285	62623										
ANK1	0	genome.wustl.edu	37	chr8	41552707	41552707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcccctaccttcgtccatccCgttgaggatctgatccaggt	9	15	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	41552707	41552707	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.3103	p.G1035R	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	42	0	0	44	12	21.43	-	-	-	T	41552707	C	T	41552707	3	4	712	1	0	0	0	0	1	0	0	0	620	652	23	1	2932	1	ANK1	8	41552707	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2720111	41552707	104811315	286	62624										
PXDNL	0	genome.wustl.edu	37	chr8	52321102	52321102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcggtaacccctcagcatccTagtgccagggtcccccagga	10	16	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	52321102	52321102	T	C	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.3082	p.R1028G	0.839	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	24	0	0	17	8	32	-	-	-	C	52321102	T	C	52321102	3	2	712	1	0	0	0	0	1	0	0	0	12931	1521	53	5	1337	5	PXDNL	8	52321102	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	10768395	52321102	94042920	287	62625										
PXDNL	0	genome.wustl.edu	37	chr8	52336218	52336218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcttccctggtcagggaacCctgcgtcgtagatagtcagc	11	12	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	52336218	52336218	C	A	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1712	p.G571V	0.018	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	145	0	0	121	32	20.92	-	-	-	A	52336218	C	A	52336218	3	1	712	1	0	0	0	0	1	0	0	0	12931	623	22	4	2719	4	PXDNL	8	52336218	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	15116	52336218	94027804	288	62626										
RP1	0	genome.wustl.edu	37	chr8	55537811	55537811	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctacacctggactaagaagaGtgagacaaaagaaatctgtg	10	7	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	55537811	55537811	G	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.1369	p.V457L	0.418	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	36	0	0	20	7	25.93	-	-	-	T	55537811	G	T	55537811	3	4	712	1	0	0	0	0	1	0	0	0	13618	1029	36	4	1379	4	RP1	8	55537811	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3201593	55537811	90826211	289	62627										
XKR4	0	genome.wustl.edu	37	chr8	56015697	56015697	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccacgccgcaaaggcaagcaTctaacgccagcaagagcaac	9	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	56015697	56015697	T	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.649	p.S217T	0.998	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	14	0	0	13	6	31.58	-	-	-	A	56015697	T	A	56015697	3	1	712	1	0	0	0	0	1	0	0	0	17530	1435	50	5	651	5	XKR4	8	56015697	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	477886	56015697	90348325	290	62628										
DNAJC5B	0	genome.wustl.edu	37	chr8	66989041	66989041	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtacggatcgctgggactctAcgtggccgagcagtttggag	16	9	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	66989041	66989041	A	G	SNP	DNAJC5B	ENST00000276570	human	ensembl	69_37n	1	known	missense	c.266	p.Y89C	1.000	superfamily_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC5B	HGNC	ENSG00000147570	61	0	0	115	17	12.88	-	-	-	G	66989041	A	G	66989041	3	3	712	1	0	0	0	0	1	0	0	0	4686	391	14	5	272	5	DNAJC5B	8	66989041	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10973344	66989041	79374981	291	62629										
ARFGEF1	0	genome.wustl.edu	37	chr8	68150987	68150987	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tacctcatgccatgaatttcCtaaataatttccatctgtat	3	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	68150987	68150987	C	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.3121	p.G1041R	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	186	1	0.53	323	49	13.17	-	-	-	G	68150987	C	G	68150987	3	3	712	1	0	0	0	0	1	0	0	0	854	690	24	4	2504	4	ARFGEF1	8	68150987	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1161946	68150987	78213035	292	62630										
ARFGEF1	0	genome.wustl.edu	37	chr8	68200263	68200263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcttttcctcacaatcatgGttttctccgtcatataacac	5	12	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	68200263	68200263	G	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.954	p.N318K	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	321	0	0	296	126	29.86	-	-	-	T	68200263	G	T	68200263	3	4	712	1	0	0	0	0	1	0	0	0	854	1252	44	4	4727	4	ARFGEF1	8	68200263	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	49276	68200263	78163759	293	62631										
ARFGEF1	0	genome.wustl.edu	37	chr8	68255462	68255462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttcttcacttccttgtcggCcaatatcttctccagagccc	5	16	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	68255462	68255462	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.61	p.A21T	1.000	NULL	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	94	0	0	152	18	10.53	-	-	-	T	68255462	C	T	68255462	3	4	712	1	0	0	0	0	1	0	0	0	854	739	26	4	5644	4	ARFGEF1	8	68255462	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	55199	68255462	78108560	294	62632										
TRPA1	0	genome.wustl.edu	37	chr8	72968046	72968046	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcataatgtagaggagtacaCccatcgttgtcttcatccat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	72968046	72968046	C	-	DEL	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	frame_shift_del	c.1239	p.C414fs	0.877	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	122	0	0	238	34	12.45	-	-	-	-	72968046	C	-	72968046	7	5	712	1	0	1	0	1	0	0	0	0	16673	494	18	0	2188	0	TRPA1	8	72968046	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4712584	72968046	73395976	295	62633										
GDAP1	0	genome.wustl.edu	37	chr8	75275185	75275185	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttaattagtcaaagctgctTgatcatgacaatgtcaagta	8	6	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	75275185	75275185	T	G	SNP	GDAP1	ENST00000220822	human	ensembl	69_37n	1	known	silent	c.591	p.L197	0.994	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381	150	0	0	224	60	21.13	-	-	-	G	75275185	T	G	75275185	2	3	712	1	0	0	0	0	0	0	0	1	6358	1799	63	5		5	GDAP1	8	75275185	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2307139	75275185	71088837	296	62634										
SLC10A5	0	genome.wustl.edu	37	chr8	82606341	82606342	+	Frame_Shift_Del	DEL	TA	TA	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtattctatgcttgatgacTattccaattgatactggcac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	82606341	82606342	TA	-	DEL	SLC10A5	ENST00000518568	human	ensembl	69_37n	-1	known	frame_shift_del	c.867_866	p.I289fs	0.994:0.998	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598	70	0	0	37	235	84.53	-	-	-	-	82606342	TA	-	82606341	7	5	712	1	0	1	0	1	0	0	0	0	14466	1512	53	0	451	0	SLC10A5	8	82606341	Frame_Shift_Del	DEL	TA	TCGA-D8-A1XQ-01A-11D-A14K-09	7331156	82606341	63757681	297	62635										
PSKH2	0	genome.wustl.edu	37	chr8	87076702	87076702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggacaatgtaacgatggctaAcccgccgcaggacgctcagc	12	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	87076702	87076702	A	G	SNP	PSKH2	ENST00000276616	human	ensembl	69_37n	-1	known	missense	c.344	p.V115A	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613	19	0	0	58	76	35.51	-	-	-	G	87076702	A	G	87076702	3	3	712	1	0	0	0	0	1	0	0	0	12745	43	2	5	819	5	PSKH2	8	87076702	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4470361	87076702	59287320	298	62636										
CCNE2	0	genome.wustl.edu	37	chr8	95906154	95906154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgtttcttggtgacctcctCtcttctttttttgacatcct	5	11	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	95906154	95906154	C	G	SNP	CCNE2	ENST00000308108	human	ensembl	69_37n	-1	known	missense	c.130	p.E44Q	1.000	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305	269	0	0	374	78	17.26	-	-	-	G	95906154	C	G	95906154	3	3	712	1	0	0	0	0	1	0	0	0	2950	922	32	2	1120	2	CCNE2	8	95906154	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8829452	95906154	50457868	299	62637										
TP53INP1	0	genome.wustl.edu	37	chr8	95952411	95952411	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcttcactgatgtcctcctcTtcttcttcttcttctgctga	4	14	8	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	95952411	95952411	T	C	SNP	TP53INP1	ENST00000342697	human	ensembl	69_37n	-1	known	silent	c.150	p.E50	0.009	NULL	NULL	-	no_errors	TP53INP1	HGNC	ENSG00000164938	140	0	0	244	34	12.23	-	-	-	C	95952411	T	C	95952411	2	2	712	1	0	0	0	0	0	0	0	1	16484	1606	56	5		5	TP53INP1	8	95952411	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	46257	95952411	50411611	300	62638										
ZNF572	0	genome.wustl.edu	37	chr8	125989479	125989479	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaacatcagagaatacatacAggagaaaagccttatcaatg	7	7	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	125989479	125989479	A	G	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	silent	c.969	p.T323	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	67	0	0	114	16	12.31	-	-	-	G	125989479	A	G	125989479	2	3	712	1	0	0	0	0	0	0	0	1	18100	175	7	5		5	ZNF572	8	125989479	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	30037068	125989479	20374543	301	62639										
TG	0	genome.wustl.edu	37	chr8	133910445	133910445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtgtagatgagaaaggaggGttcatccctggctcactgac	13	8	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	133910445	133910445	G	T	SNP	TG	ENST00000518505	human	ensembl	69_37n	1	novel	missense	c.71	p.G24V	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	pseudogene:no_stop_codon	TG	HGNC	ENSG00000042832	95	0	0	256	55	17.68	-	-	-	T	133910445	G	T	133910445	3	4	712	1	0	0	0	0	1	0	0	0	15908	1248	44	4	3221	4	TG	8	133910445	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	7920966	133910445	12453577	302	62640										
PLEC	0	genome.wustl.edu	37	chr8	144995305	144995305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggcctcggagtcagtgtagAccagctccccgcccttggca	13	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	8	144995305	144995305	A	G	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.9095	p.V3032A	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	47	0	0	59	16	20.51	-	-	-	G	144995305	A	G	144995305	3	3	712	1	0	0	0	0	1	0	0	0	12126	275	10	5	4963	5	PLEC	8	144995305	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	11084860	144995305	1368717	303	62641										
PTPRD	0	genome.wustl.edu	37	chr9	8526637	8526637	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcactcttacctcttattggTgtaccacctgggtggataat	9	10	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	8526637	8526637	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	silent	c.558	p.T186	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	139	0	0	133	20	13.07	-	-	-	C	8526637	T	C	8526637	2	2	712	1	0	0	0	0	0	0	0	1	12882	1683	59	5		5	PTPRD	9	8526637	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09		8526637	132686794	304	62642										
FREM1	0	genome.wustl.edu	37	chr9	14776166	14776166	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagtgtgatctcaaacaccCcgtgctcggtccgcagtcca	9	16	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	14776166	14776166	C	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.4481	p.G1494V	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	34	0	0	53	13	19.4	-	-	-	A	14776166	C	A	14776166	3	1	712	1	0	0	0	0	1	0	0	0	6093	623	22	4	2113	4	FREM1	9	14776166	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	6249529	14776166	126437265	305	62643										
TEK	0	genome.wustl.edu	37	chr9	27197533	27197533	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagcagtacgtggtccgagcTagagtcaacaccaaggccca	12	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	27197533	27197533	T	C	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	silent	c.1845	p.A615	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	58	0	0	49	10	16.95	-	-	-	C	27197533	T	C	27197533	2	2	712	1	0	0	0	0	0	0	0	1	15846	1509	53	5		5	TEK	9	27197533	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	12421367	27197533	114015898	306	62644										
NOL6	0	genome.wustl.edu	37	chr9	33467507	33467507	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctttggtggatcttggctgAtgtcccactgcaggatttca	12	9	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	33467507	33467507	A	T	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	missense	c.1610	p.I537N	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	123	0	0	138	51	26.98	-	-	-	T	33467507	A	T	33467507	3	4	712	1	0	0	0	0	1	0	0	0	10597	333	12	5	1886	5	NOL6	9	33467507	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	6269974	33467507	107745924	307	62645										
CD72	0	genome.wustl.edu	37	chr9	35616076	35616076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctgcctggcaggcctgtagCtgcccttcggccgcctgatg	13	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	35616076	35616076	C	T	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	silent	c.552	p.Q184	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	87	0	0	88	31	26.05	-	-	-	T	35616076	C	T	35616076	2	4	712	1	0	0	0	0	0	0	0	1	3063	796	28	4		4	CD72	9	35616076	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2148569	35616076	105597355	308	62646										
RECK	0	genome.wustl.edu	37	chr9	36100533	36100533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtaaatctcggggaagtattAtttgcaagtaagtttctttc	9	5	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	36100533	36100533	A	G	SNP	RECK	ENST00000377966	human	ensembl	69_37n	1	known	missense	c.1291	p.I431V	1.000	NULL	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Prot_inh_PMP,smart_Prot_inh_Kazal	-	no_errors	RECK	HGNC	ENSG00000122707	138	0	0	93	18	16.22	-	-	-	G	36100533	A	G	36100533	3	3	712	1	0	0	0	0	1	0	0	0	13283	449	16	5	1333	5	RECK	9	36100533	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	484457	36100533	105112898	309	62647										
CCIN	0	genome.wustl.edu	37	chr9	36170592	36170592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcctgacctgcccatcgggCttgtcttccacaccatggtg	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	36170592	36170592	C	T	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.1093	p.L365F	1.000	smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	52	0	0	85	12	12.37	-	-	-	T	36170592	C	T	36170592	3	4	712	1	0	0	0	0	1	0	0	0	2905	797	28	4	1095	4	CCIN	9	36170592	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	70059	36170592	105042839	310	62648										
GNE	0	genome.wustl.edu	37	chr9	36236868	36236868	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggactagggtccgcttgtTaaatgagataagtgcatcca	11	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	36236868	36236868	T	G	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.823	p.N275H	1.000	pfam_UDP_GlcNAc_Epimerase_2,tigrfam_UDP-GlcNAc_Epase	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	171	0	0	123	24	16.33	-	-	-	G	36236868	T	G	36236868	3	3	712	1	0	0	0	0	1	0	0	0	6574	1754	61	5	1474	5	GNE	9	36236868	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	66276	36236868	104976563	311	62649										
PAX5	0	genome.wustl.edu	37	chr9	36882083	36882083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggagggtacccggggagggtCgtgctcgccaagtcacggcc	18	12	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	36882083	36882083	C	T	SNP	PAX5	ENST00000523493	human	ensembl	69_37n	-1	known	missense	c.857	p.R286Q	0.995	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092	32	0	0	35	6	14.63	-	-	-	T	36882083	C	T	36882083	3	4	712	1	0	0	0	0	1	0	0	0	11555	871	31	1	257	1	PAX5	9	36882083	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	645215	36882083	104331348	312	62650										
GRHPR	0	genome.wustl.edu	37	chr9	37429703	37429703	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accctttgcgggactgggaaCgagacatggactctccttgc	12	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	37429703	37429703	C	G	SNP	GRHPR	ENST00000494290	human	ensembl	69_37n	1	known	missense	c.39	p.N13K	0.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106	39	0	0	61	10	14.08	-	-	-	G	37429703	C	G	37429703	3	3	712	1	0	0	0	0	1	0	0	0	6817	551	19	3		3	GRHPR	9	37429703	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	547620	37429703	103783728	313	62651										
ZBTB5	0	genome.wustl.edu	37	chr9	37440931	37440931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agttacaactggcattttggGagctatgcggcggtagtaag	14	6	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	37440931	37440931	G	A	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.1618	p.P540S	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	89	0	0	69	29	29.59	-	-	-	A	37440931	G	A	37440931	3	1	712	1	0	0	0	0	1	0	0	0	17647	1174	41	2	419	2	ZBTB5	9	37440931	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	11228	37440931	103772500	314	62652										
PGM5	0	genome.wustl.edu	37	chr9	71080063	71080063	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accccagctggatggagattCttctcaaatctgatggactc	9	11	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	71080063	71080063	C	G	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.1098	p.F366L	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	252	0	0	192	97	33.56	-	-	-	G	71080063	C	G	71080063	3	3	712	1	0	0	0	0	1	0	0	0	11875	912	32	2	1124	2	PGM5	9	71080063	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	33639132	71080063	70133368	315	62653										
MAMDC2	0	genome.wustl.edu	37	chr9	72659140	72659140	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttaaggggcgtcctcctggcGttgcaaggtaaggcctggac	15	10	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	72659140	72659140	G	A	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	silent	c.27	p.A9	0.839	NULL	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	25	0	0	35	8	18.6	-	-	-	A	72659140	G	A	72659140	2	1	712	1	0	0	0	0	0	0	0	1	9274	1132	40	1		1	MAMDC2	9	72659140	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1579077	72659140	68554291	316	62654										
VPS13A	0	genome.wustl.edu	37	chr9	79930243	79930243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggaaagtcagagatggttGtgtgactgatgcggtctttc	14	6	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	79930243	79930243	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.4487	p.C1496Y	0.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	223	0	0	182	52	22.22	-	-	-	A	79930243	G	A	79930243	3	1	712	1	0	0	0	0	1	0	0	0	17286	1377	48	4	4637	4	VPS13A	9	79930243	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	7271103	79930243	61283188	317	62655										
UBQLN1	0	genome.wustl.edu	37	chr9	86294875	86294875	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttagacaaaagttgtcgctGcatctgactctgtagttcag	10	8	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	86294875	86294875	G	A	SNP	UBQLN1	ENST00000376395	human	ensembl	69_37n	-1	known	nonsense	c.526	p.Q176*	1.000	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018	93	0	0	71	32	31.07	-	-	-	A	86294875	G	A	86294875	4	1	712	1	0	0	0	0	0	1	0	0	16993	1328	46	4	1275	4	UBQLN1	9	86294875	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6364632	86294875	54918556	318	62656										
HNRNPK	0	genome.wustl.edu	37	chr9	86584278	86584278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actagtcttagaaaaactttCcagaatactgcttcacacta	4	10	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	86584278	86584278	C	G	SNP	HNRNPK	ENST00000351839	human	ensembl	69_37n	-1	known	missense	c.1379	p.G460A	1.000	NULL	pfam_KH_dom_type_1,pfam_ROK_N,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HNRNPK	HGNC	ENSG00000165119	36	0	0	24	15	38.46	-	-	-	G	86584278	C	G	86584278	3	3	712	1	0	0	0	0	1	0	0	0	7320	855	30	2	16	2	HNRNPK	9	86584278	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	289403	86584278	54629153	319	62657										
AGTPBP1	0	genome.wustl.edu	37	chr9	88200482	88200482	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cataaatacattcttctttcGggaatggccatgataatcac	6	9	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	88200482	88200482	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	nonsense	c.3097	p.R1033*	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	84	0	0	74	16	17.78	-	-	-	A	88200482	G	A	88200482	4	1	712	1	0	0	0	0	0	1	0	0	400	1124	39	1	635	1	AGTPBP1	9	88200482	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1616204	88200482	53012949	320	62658										
XPA	0	genome.wustl.edu	37	chr9	100437634	100437634	+	RNA	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcatctatgaagatgttgcTtttttttttgaattttgaaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936	34	0	0	27	5	15.62	-	-	-	-	100437634	T	-	100437634	6	5	712	0	1	1	0	1	0	0	0	0	17537	1624	56	0		0	XPA	9	100437634	RNA	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	12237152	100437634	40775797	321	62659										
RNF20	0	genome.wustl.edu	37	chr9	104314716	104314716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtcccagtctagtactgagGacccgaaggatgagcctgcg	13	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	104314716	104314716	G	T	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.1582	p.D528Y	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	56	0	0	47	9	16.07	-	-	-	T	104314716	G	T	104314716	3	4	712	1	0	0	0	0	1	0	0	0	13559	1174	41	2	1628	2	RNF20	9	104314716	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3877082	104314716	36898715	322	62660										
GRIN3A	0	genome.wustl.edu	37	chr9	104433265	104433265	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctgcccaagcgggtccacaTtggctttcccatggggtcat	12	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	104433265	104433265	T	G	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.1429	p.M477L	0.998	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	98	0	0	67	34	33.66	-	-	-	G	104433265	T	G	104433265	3	3	712	1	0	0	0	0	1	0	0	0	6834	1493	52	5	1946	5	GRIN3A	9	104433265	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	118549	104433265	36780166	323	62661										
SVEP1	0	genome.wustl.edu	37	chr9	113212424	113212424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gacgttctttccacatcgggTacccaaaaatccaggtgggc	10	12	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	113212424	113212424	T	C	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.4018	p.T1340A	0.906	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	99	0	0	55	19	25.33	-	-	-	C	113212424	T	C	113212424	3	2	712	1	0	0	0	0	1	0	0	0	15511	1638	57	5	6797	5	SVEP1	9	113212424	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	8779159	113212424	28001007	324	62662										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123334252	123334252	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctggttttgtgtacttacGaccatttcccaacccagcat	7	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	123334252	123334252	G	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	silent	c.127	p.L43	0.848	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	162	0	0	86	27	23.89	-	-	-	A	123334252	G	A	123334252	2	1	712	1	0	0	0	0	0	0	0	1	3175	1072	37	1		1	CDK5RAP2	9	123334252	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	10121828	123334252	17879179	325	62663										
RAB14	0	genome.wustl.edu	37	chr9	123954462	123954462	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacttacattttttttctgtAaattgatgaagcaagcaaga	6	5	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	123954462	123954462	A	G	SNP	RAB14	ENST00000373840	human	ensembl	69_37n	-1	known	silent	c.93	p.F31	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396	222	0	0	119	22	15.49	-	-	-	G	123954462	A	G	123954462	2	3	712	1	0	0	0	0	0	0	0	1	12983	359	13	5		5	RAB14	9	123954462	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	620210	123954462	17258969	326	62664										
OR1N1	0	genome.wustl.edu	37	chr9	125288931	125288931	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcacaatgtggatgtaggaGgtgacaatgcataaaaaggg	15	4	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	125288931	125288931	G	T	SNP	OR1N1	ENST00000304880	human	ensembl	69_37n	-1	known	silent	c.642	p.T214	0.054	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505	71	0	0	33	10	22.73	-	-	-	T	125288931	G	T	125288931	2	4	712	1	0	0	0	0	0	0	0	1	11042	987	35	4		4	OR1N1	9	125288931	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1334469	125288931	15924500	327	62665										
DENND1A	0	genome.wustl.edu	37	chr9	126219633	126219633	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagttgcttctcaccagcgtActcgcccatgttgatttcct	8	13	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	126219633	126219633	A	T	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	missense	c.1084	p.Y362N	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	104	0	0	55	17	23.61	-	-	-	T	126219633	A	T	126219633	3	4	712	1	0	0	0	0	1	0	0	0	4462	391	14	5	1988	5	DENND1A	9	126219633	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	930702	126219633	14993798	328	62666										
GOLGA1	0	genome.wustl.edu	37	chr9	127661657	127661657	+	Missense_Mutation	SNP	G	G	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcccgcgttctctccaggGccactatctgggcttctagc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	127661657	127661657	G	A	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	missense	c.1262	p.A421V	0.035	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	67	0	0	33	9	21.43	-	-	-	A	127661657	G	A	127661657	3	1	712	1	0	0	0	0	1	0	0	0	6603	1203	42	4	1081	4	GOLGA1	9	127661657	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1442024	127661657	13551774	329	62667	457	2								
GOLGA1	0	genome.wustl.edu	37	chr9	127661658	127661658	+	Missense_Mutation	SNP	C	C	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcccgcgttctctccagggCcactatctgggcttctagcg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	127661658	127661658	C	A	SNP	GOLGA1	ENST00000373555	human	ensembl	69_37n	-1	known	missense	c.1261	p.A421S	0.011	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	67	0	0	31	9	21.95	-	-	-	A	127661658	C	A	127661658	3	1	712	1	0	0	0	0	1	0	0	0	6603	739	26	4	1082	4	GOLGA1	9	127661658	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1	127661658	13551773	330	62668	457	2								
EXOSC2	0	genome.wustl.edu	37	chr9	133570878	133570878	+	Splice_Site	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtatcttcgccttgcatcaGgggccatggaacgtatatgg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	133570878	133570878	G	-	DEL	EXOSC2	ENST00000372358	human	ensembl	69_37n	1	known	splice_site_del	c.123-1	e2-1	1.000	-	-	-	no_errors	EXOSC2	HGNC	ENSG00000130713	188	0	0	88	29	24.58	-	-	-	-	133570878	G	-	133570878	8	5	712	1	0	1	0	1	0	0	1	0	5351	1014	35	0	128	0	EXOSC2	9	133570878	Splice_Site	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5909220	133570878	7642553	331	62669										
NTNG2	0	genome.wustl.edu	37	chr9	135102255	135102255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtgcaagtgcaacctgcacGccaacctgtgctccatgcgc	11	15	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	135102255	135102255	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	69_37n	1	known	missense	c.877	p.A293T	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	19	0	0	6	4	36.36	-	-	-	A	135102255	G	A	135102255	3	1	712	1	0	0	0	0	1	0	0	0	10778	1087	38	1	887	1	NTNG2	9	135102255	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1531377	135102255	6111176	332	62670										
ADAMTS13	0	genome.wustl.edu	37	chr9	136315031	136315031	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttggacacccagtgccagGggctgcctcgcccggaaccc	13	16	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	136315031	136315031	G	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.2989	p.G997W	0.715	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	51	0	0	62	19	23.46	-	-	-	T	136315031	G	T	136315031	3	4	712	1	0	0	0	0	1	0	0	0	258	1232	43	4	3079	4	ADAMTS13	9	136315031	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1212776	136315031	4898400	333	62671										
NOTCH1	0	genome.wustl.edu	37	chr9	139390805	139390805	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcagcgacgtgggcagggcGgggctctcctggggcagaat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	139390805	139390805	G	-	DEL	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	frame_shift_del	c.7386	p.A2463fs	0.996	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	35	0	0	22	4	14.81	-	-	-	-	139390805	G	-	139390805	7	5	712	1	0	1	0	1	0	0	0	0	10619	1103	39	0	285	0	NOTCH1	9	139390805	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3075774	139390805	1822626	334	62672										
ANAPC2	0	genome.wustl.edu	37	chr9	140082004	140082004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttgcttgtcactgctgcaCcctgcacacagcgggctctg	11	14	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	140082004	140082004	C	T	SNP	ANAPC2	ENST00000323927	human	ensembl	69_37n	-1	known	silent	c.669	p.G223	0.812	NULL	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248	69	0	0	52	19	26.76	-	-	-	T	140082004	C	T	140082004	2	4	712	1	0	0	0	0	0	0	0	1	603	494	18	4		4	ANAPC2	9	140082004	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	691199	140082004	1131427	335	62673										
ENTPD8	0	genome.wustl.edu	37	chr9	140330201	140330201	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcctctggcaaaactcccaGatggtggcgttgaccgtgct	13	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	9	140330201	140330201	G	C	SNP	ENTPD8	ENST00000371506	human	ensembl	69_37n	-1	known	missense	c.1131	p.I377M	0.292	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD8	HGNC	ENSG00000188833	105	0	0	96	28	22.58	-	-	-	C	140330201	G	C	140330201	3	2	712	1	0	0	0	0	1	0	0	0	5182	932	33	2	368	2	ENTPD8	9	140330201	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	248197	140330201	883230	336	62674										
IL2RA	0	genome.wustl.edu	37	chr10	6061845	6061845	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcccgcacctgttgttgtgaCgaggcaggaagtctcactct	11	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	6061845	6061845	C	A	SNP	IL2RA	ENST00000379959	human	ensembl	69_37n	-1	known	missense	c.643	p.V215F	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL2RA	HGNC	ENSG00000134460	143	0	0	125	39	23.78	-	-	-	A	6061845	C	A	6061845	3	1	712	1	0	0	0	0	1	0	0	0	7740	536	19	3	191	3	IL2RA	10	6061845	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		6061845	129472902	337	62675										
UPF2	0	genome.wustl.edu	37	chr10	11963302	11963302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acacgtgctgctggatcaacGtctcctaaaggaacaaacag	9	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	11963302	11963302	G	A	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	missense	c.3814	p.R1272C	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	127	0	0	109	25	18.66	-	-	-	A	11963302	G	A	11963302	3	1	712	1	0	0	0	0	1	0	0	0	17101	1145	40	1	8	1	UPF2	10	11963302	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5901457	11963302	123571445	338	62676										
DHTKD1	0	genome.wustl.edu	37	chr10	12143133	12143133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gccaggagacggatgacaccTacatccccctgaaccatatg	9	14	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	12143133	12143133	T	C	SNP	DHTKD1	ENST00000263035	human	ensembl	69_37n	1	known	missense	c.1849	p.Y617H	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192	121	0	0	122	21	14.69	-	-	-	C	12143133	T	C	12143133	3	2	712	1	0	0	0	0	1	0	0	0	4536	1522	53	5	1887	5	DHTKD1	10	12143133	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	179831	12143133	123391614	339	62677										
OPTN	0	genome.wustl.edu	37	chr10	13151192	13151192	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgaaagcacaggaaatggaCccccccacctggcccaccca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	13151192	13151192	C	-	DEL	OPTN	ENST00000263036	human	ensembl	69_37n	1	known	frame_shift_del	c.70	p.H26fs	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	45	0	0	42	10	19.23	-	-	-	-	13151192	C	-	13151192	7	5	712	1	0	1	0	1	0	0	0	0	10962	507	18	0	72	0	OPTN	10	13151192	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1008059	13151192	122383555	340	62678										
ANKRD26	0	genome.wustl.edu	37	chr10	27382293	27382293	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tataccttgttttttgcttcAatatttgcatcatacaaaag	4	7	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	27382293	27382293	A	G	SNP	ANKRD26	ENST00000436985	human	ensembl	69_37n	-1	known	silent	c.516	p.I172	0.011	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	229	0	0	193	47	19.58	-	-	-	G	27382293	A	G	27382293	2	3	712	1	0	0	0	0	0	0	0	1	654	126	5	5		5	ANKRD26	10	27382293	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	14231101	27382293	108152454	341	62679										
PTCHD3	0	genome.wustl.edu	37	chr10	27702992	27702992	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggcaggggtgcatcctgcTccgacgccaggggtcctgag	16	13	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	27702992	27702992	T	A	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	missense	c.188	p.E63V	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	13	0	0	15	7	31.82	-	-	-	A	27702992	T	A	27702992	3	1	712	1	0	0	0	0	1	0	0	0	12814	1551	54	5	2131	5	PTCHD3	10	27702992	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	320699	27702992	107831755	342	62680										
SVIL	0	genome.wustl.edu	37	chr10	29759278	29759278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggctttgcatccgtgccacaGgtagatgagggccttgttga	14	9	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	29759278	29759278	G	T	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.5770	p.L1924M	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	142	0	0	145	33	18.54	-	-	-	T	29759278	G	T	29759278	3	4	712	1	0	0	0	0	1	0	0	0	15512	991	35	4	902	4	SVIL	10	29759278	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2056286	29759278	105775469	343	62681										
CCDC7	0	genome.wustl.edu	37	chr10	32745249	32745251	+	In_Frame_Del	DEL	AAG	AAG	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagctagaagaagcacttaAagaagaacaaaatgtatgta							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	32745249	32745251	AAG	-	DEL	CCDC7	ENST00000277657	human	ensembl	69_37n	1	known	in_frame_del	c.443_445	p.E150in_frame_del	0.115:0.043:0.968	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	105	0	0	80	17	17.53	-	-	-	-	32745251	AAG	-	32745249	7	5	712	1	0	1	0	1	0	0	0	0	2869	14	1	0	453	0	CCDC7	10	32745249	In_Frame_Del	DEL	AAG	TCGA-D8-A1XQ-01A-11D-A14K-09	2985971	32745249	102789498	344	62682										
FRMPD2	0	genome.wustl.edu	37	chr10	49392635	49392635	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actgagaaataattaattctAtgttgtcaggggaattctgg	10	4	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	49392635	49392635	A	T	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2558	p.I853K	0.805	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	118	0	0	101	46	31.29	-	-	-	T	49392635	A	T	49392635	3	4	712	1	0	0	0	0	1	0	0	0	6107	449	16	5	1411	5	FRMPD2	10	49392635	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	16647386	49392635	86142112	345	62683										
ERCC6	0	genome.wustl.edu	37	chr10	50708659	50708659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caattatctggatggtcttgCccaatcccatttcatctccc	5	14	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	50708659	50708659	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.1610	p.G537D	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	97	0	0	93	17	15.45	-	-	-	T	50708659	C	T	50708659	3	4	712	1	0	0	0	0	1	0	0	0	5254	739	26	4	2931	4	ERCC6	10	50708659	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1316024	50708659	84826088	346	62684										
OGDHL	0	genome.wustl.edu	37	chr10	50952735	50952735	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagtgctttatatgcagaaTctttttatccttggacctgc	7	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	50952735	50952735	T	C	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.1693	p.I565V	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	97	0	0	78	20	20.41	-	-	-	C	50952735	T	C	50952735	3	2	712	1	0	0	0	0	1	0	0	0	10913	1435	50	5	1383	5	OGDHL	10	50952735	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	244076	50952735	84582012	347	62685										
PCDH15	0	genome.wustl.edu	37	chr10	55566505	55566505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagcctgttccttagtggcTtcaccgctgtattgtcagtc	9	12	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	55566505	55566505	T	C	SNP	PCDH15	ENST00000414778	human	ensembl	69_37n	-1	known	missense	c.4880	p.K1627R	0.020	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	196	0	0	132	103	43.83	-	-	-	C	55566505	T	C	55566505	3	2	712	1	0	0	0	0	1	0	0	0	11584	1609	56	5	169	5	PCDH15	10	55566505	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	4613770	55566505	79968242	348	62686										
ZNF365	0	genome.wustl.edu	37	chr10	64415342	64415342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttgcagagtcgtgctgtggTctctccgagctcatcacggc	12	13	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	64415342	64415342	T	C	SNP	ZNF365	ENST00000395251	human	ensembl	69_37n	1	known	silent	c.342	p.G114	0.996	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	68	0	0	56	14	20	-	-	-	C	64415342	T	C	64415342	2	2	712	1	0	0	0	0	0	0	0	1	17965	1654	58	5		5	ZNF365	10	64415342	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	8848837	64415342	71119405	349	62687										
LRRC20	0	genome.wustl.edu	37	chr10	72061216	72061216	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagtgggttgaagcggaggTtgatgctgcgcaaggctggc	19	6	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	72061216	72061216	T	A	SNP	LRRC20	ENST00000355790	human	ensembl	69_37n	-1	known	missense	c.449	p.N150I	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC20	HGNC	ENSG00000172731	40	0	0	43	10	18.87	-	-	-	A	72061216	T	A	72061216	3	1	712	1	0	0	0	0	1	0	0	0	9043	1725	60	5	109	5	LRRC20	10	72061216	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	7645874	72061216	63473531	350	62688										
OIT3	0	genome.wustl.edu	37	chr10	74666365	74666365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttctgcagatgaaaatgaaTgtgagcaaaacaacggtggc	11	7	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	74666365	74666365	T	C	SNP	OIT3	ENST00000334011	human	ensembl	69_37n	1	known	missense	c.556	p.C186R	1.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Zona_pellucida_Endoglin/CD105,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	OIT3	HGNC	ENSG00000138315	128	0	0	104	26	20	-	-	-	C	74666365	T	C	74666365	3	2	712	1	0	0	0	0	1	0	0	0	10922	1464	51	5	570	5	OIT3	10	74666365	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2605149	74666365	60868382	351	62689										
IFIT1	0	genome.wustl.edu	37	chr10	91162854	91162854	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gataaagctcttgagttattAaaaaaggccttgcaggaaac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	91162854	91162854	A	-	DEL	IFIT1	ENST00000371804	human	ensembl	69_37n	1	known	frame_shift_del	c.822	p.K276fs	0.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	39	0	0	25	4	13.79	-	-	-	-	91162854	A	-	91162854	7	5	712	1	0	1	0	1	0	0	0	0	7575	359	13	0	828	0	IFIT1	10	91162854	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	16496489	91162854	44371893	352	62690										
CEP55	0	genome.wustl.edu	37	chr10	95276744	95276744	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacgatctcttggcaagtgcAaaaaaagatcttgaggttga							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	95276744	95276744	A	-	DEL	CEP55	ENST00000371485	human	ensembl	69_37n	1	known	frame_shift_del	c.732	p.D247fs	0.967	NULL	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180	75	0	0	46	17	26.98	-	-	-	-	95276744	A	-	95276744	7	5	712	1	0	1	0	1	0	0	0	0	3284	117	5	0	750	0	CEP55	10	95276744	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4113890	95276744	40258003	353	62691										
FRA10AC1	0	genome.wustl.edu	37	chr10	95441330	95441330	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttttttggttttatcttttcTtttttttgacttgatttctt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	95441330	95441330	T	-	DEL	FRA10AC1	ENST00000359204	human	ensembl	69_37n	-1	known	frame_shift_del	c.694	p.R232fs	0.942	NULL	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690	280	1	0.36	165	35	17.41	-	-	-	-	95441330	T	-	95441330	7	5	712	1	0	1	0	1	0	0	0	0	6089	1617	56	0	269	0	FRA10AC1	10	95441330	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	164586	95441330	40093417	354	62692										
LGI1	0	genome.wustl.edu	37	chr10	95557083	95557083	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acactcagaacgcctcatttAattctgtctagtagttccca	5	12	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	95557083	95557083	A	T	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.1197	p.L399F	1.000	pfam_EPTP,superfamily_WD40_repeat_dom	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	72	0	0	65	16	19.75	-	-	-	T	95557083	A	T	95557083	3	4	712	1	0	0	0	0	1	0	0	0	8806	359	13	5	1227	5	LGI1	10	95557083	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	115753	95557083	39977664	355	62693										
PPRC1	0	genome.wustl.edu	37	chr10	103904781	103904781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttccccccccgccagcggcGttgacattccccaggagaag	10	17	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	103904781	103904781	G	A	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.3613	p.V1205I	0.997	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	109	0	0	90	25	21.74	-	-	-	A	103904781	G	A	103904781	3	1	712	1	0	0	0	0	1	0	0	0	12487	1145	40	1	3643	1	PPRC1	10	103904781	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8347698	103904781	31629966	356	62694										
CCDC147	0	genome.wustl.edu	37	chr10	106136572	106136572	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctccctggggattcagaggTagaggcttcaaagaaacaag	12	8	3	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	106136572	106136572	T	C	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.1094	p.V365A	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	74	0	0	43	12	21.82	-	-	-	C	106136572	T	C	106136572	3	2	712	1	0	0	0	0	1	0	0	0	2806	1638	57	5	1124	5	CCDC147	10	106136572	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2231791	106136572	29398175	357	62695										
PNLIPRP2	0	genome.wustl.edu	37	chr10	118386474	118386474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcaaaacattcgggttgttGgggcggagacagctttctta	13	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	118386474	118386474	G	T	SNP	PNLIPRP2	ENST00000537242	human	ensembl	69_37n	1	known	missense	c.430	p.G144W	1.000	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862	116	1	0.85	127	29	18.59	-	-	-	T	118386474	G	T	118386474	3	4	712	1	0	0	0	0	1	0	0	0	12225	1348	47	4	450	4	PNLIPRP2	10	118386474	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	12249902	118386474	17148273	358	62696										
MMP21	0	genome.wustl.edu	37	chr10	127461252	127461252	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcgtcaaagtgaatgtcaccTaggcgccaggcgtgtgcaaa	12	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	127461252	127461252	T	C	SNP	MMP21	ENST00000368808	human	ensembl	69_37n	-1	known	silent	c.765	p.L255	0.969	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP21	HGNC	ENSG00000154485	85	0	0	183	24	11.59	-	-	-	C	127461252	T	C	127461252	2	2	712	1	0	0	0	0	0	0	0	1	9731	1509	53	5		5	MMP21	10	127461252	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9074778	127461252	8073495	359	62697										
MKI67	0	genome.wustl.edu	37	chr10	129903631	129903631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgcagtttccctgaacacgTtgatgcctttatcctcatct	6	12	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	129903631	129903631	T	G	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.6473	p.N2158T	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	366	0	0	355	57	13.83	-	-	-	G	129903631	T	G	129903631	3	3	712	1	0	0	0	0	1	0	0	0	9669	1725	60	5	3309	5	MKI67	10	129903631	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2442379	129903631	5631116	360	62698										
MKI67	0	genome.wustl.edu	37	chr10	129913443	129913443	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttctggcttagtggcagagTcagctgcatcttcaacttta	9	9	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	10	129913443	129913443	T	C	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.1229	p.D410G	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	65	0	0	73	9	10.47	-	-	-	C	129913443	T	C	129913443	3	2	712	1	0	0	0	0	1	0	0	0	9669	1667	58	5	8577	5	MKI67	10	129913443	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9812	129913443	5621304	361	62699										
MUC5B	0	genome.wustl.edu	37	chr11	1268667	1268667	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caccctagcagcaggaccacCgagtcacccccttctccagg	8	19	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	1268667	1268667	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10566	p.T3522	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	171	0	0	121	38	23.9	-	-	-	T	1268667	C	T	1268667	2	4	712	1	0	0	0	0	0	0	0	1	10051	639	23	1		1	MUC5B	11	1268667	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		1268667	133737849	362	62700										
C11orf21	0	genome.wustl.edu	37	chr11	2320797	2320797	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atagccaggggcaactgcccAggtaaactgagacagcagca	12	11	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	2320797	2320797	A	T	SNP	C11orf21	ENST00000456145	human	ensembl	69_37n	-1	known	silent	c.426	p.P142	0.189	NULL	NULL	-	no_errors	C11orf21	HGNC	ENSG00000110665	85	0	0	82	20	19.42	-	-	-	T	2320797	A	T	2320797	2	4	712	1	0	0	0	0	0	0	0	1	1645	175	7	5		5	C11orf21	11	2320797	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1052130	2320797	132685719	363	62701										
TRPM5	0	genome.wustl.edu	37	chr11	2434054	2434055	+	Frame_Shift_Ins	INS	-	-	G													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctcgggccctgaggggccctINSgggggggcggcctgaagtcc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	2434054	2434055	-	G	INS	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2291_2290	p.Q764fs	0.009:0.011	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	16	0	0	26	4	13.33	-	-	-	G	2434055	-	G	2434054	7	5	712	1	0	1	1	0	0	0	0	0	16685	1580	55	0	1252	0	TRPM5	11	2434054	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	113257	2434054	132572462	364	62702										
SLC22A18AS	0	genome.wustl.edu	37	chr11	2920736	2920736	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcctggatcctctcatccGgcagaactgtcgccttgctt	9	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	2920736	2920736	G	C	SNP	SLC22A18AS	ENST00000533594	human	ensembl	69_37n	-1	known	missense	c.196	p.R66G	0.000	NULL	NULL	-	no_errors	SLC22A18AS	HGNC	ENSG00000254827	72	0	0	56	14	19.72	-	-	-	C	2920736	G	C	2920736	3	2	712	1	0	0	0	0	1	0	0	0	14539	1115	39	3	573	3	SLC22A18AS	11	2920736	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	486682	2920736	132085780	365	62703										
CARS	0	genome.wustl.edu	37	chr11	3062149	3062149	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcgtgccccatgtgagatgcGtcatagacggttggcccaca	13	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	3062149	3062149	G	A	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	silent	c.432	p.D144	0.993	pfam_Cys-tRNA/MSH_ligase,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	111	0	0	89	15	14.42	-	-	-	A	3062149	G	A	3062149	2	1	712	1	0	0	0	0	0	0	0	1	2682	1136	40	1		1	CARS	11	3062149	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	141413	3062149	131944367	366	62704										
ART5	0	genome.wustl.edu	37	chr11	3661293	3661293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaaagtgcctcatgtagagCtcccgggagcctccgcccgt	13	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	3661293	3661293	C	T	SNP	ART5	ENST00000453353	human	ensembl	69_37n	-1	putative	missense	c.235	p.A79T	0.193	pfam_ART	pfam_ART,prints_ART	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ART5	HGNC	ENSG00000167311	27	0	0	27	5	15.62	-	-	-	T	3661293	C	T	3661293	3	4	712	1	0	0	0	0	1	0	0	0	1004	796	28	4	521	4	ART5	11	3661293	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	599144	3661293	131345223	367	62705										
TPP1	0	genome.wustl.edu	37	chr11	6637976	6637976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actggcctcaatcccggcccGgccccggccctgttgtccaa	10	19	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	6637976	6637976	G	A	SNP	TPP1	ENST00000299427	human	ensembl	69_37n	-1	known	missense	c.802	p.R268W	0.987	superfamily_Peptidase_S8/S53	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340	35	0	0	30	12	28.57	-	-	-	A	6637976	G	A	6637976	3	1	712	1	0	0	0	0	1	0	0	0	16507	1115	39	1	917	1	TPP1	11	6637976	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2976683	6637976	128368540	368	62706										
SLC6A5	0	genome.wustl.edu	37	chr11	20629163	20629163	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcaacaacccttggaataCgccagaatgcaaagataaaa	7	10	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	20629163	20629163	C	T	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	missense	c.950	p.T317M	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	127	0	0	124	22	15.07	-	-	-	T	20629163	C	T	20629163	3	4	712	1	0	0	0	0	1	0	0	0	14776	536	19	1	968	1	SLC6A5	11	20629163	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	13991187	20629163	114377353	369	62707										
FANCF	0	genome.wustl.edu	37	chr11	22646476	22646477	+	Frame_Shift_Ins	INS	-	-	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgggactcagttccaacccINSaaatgcctttctgaaggtca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	22646476	22646477	-	A	INS	FANCF	ENST00000327470	human	ensembl	69_37n	-1	known	frame_shift_ins	c.881_880	p.W294fs	0.997:0.979	NULL	NULL	-	no_errors	FANCF	HGNC	ENSG00000183161	44	0	0	63	8	11.27	-	-	-	A	22646477	-	A	22646476	7	5	712	1	0	1	1	0	0	0	0	0	5713	595	21	0	247	0	FANCF	11	22646476	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	2017313	22646476	112360040	370	62708										
CAT	0	genome.wustl.edu	37	chr11	34490058	34490058	+	RNA	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tacttgacttaagagaacttAaaaaaaaaaaaataaactag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	34490058	34490058	A	-	DEL	CAT	ENST00000525707	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691	20	0	0	8	4	30.77	-	-	-	-	34490058	A	-	34490058	6	5	712	0	1	1	0	1	0	0	0	0	2711	377	13	0		0	CAT	11	34490058	RNA	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	11843582	34490058	100516458	371	62709										
NUP160	0	genome.wustl.edu	37	chr11	47800714	47800714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttatcaactttttgctggtaGtcctccaatttgtcaagtat	6	8	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	47800714	47800714	G	A	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	silent	c.4254	p.D1418	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	135	0	0	131	19	12.67	-	-	-	A	47800714	G	A	47800714	2	1	712	1	0	0	0	0	0	0	0	1	10830	1020	36	4		4	NUP160	11	47800714	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	13310656	47800714	87205802	372	62710										
NUP160	0	genome.wustl.edu	37	chr11	47819397	47819397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atagtaattgtgagtcataaGgtccacagctctagcacgtg	10	8	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	47819397	47819397	G	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.3223	p.L1075I	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	106	0	0	67	13	16.25	-	-	-	T	47819397	G	T	47819397	3	4	712	1	0	0	0	0	1	0	0	0	10830	1000	35	4	1127	4	NUP160	11	47819397	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	18683	47819397	87187119	373	62711										
OR4B1	0	genome.wustl.edu	37	chr11	48238525	48238525	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tatcagcaagagtctggattCtcccatgtacttcttcctta							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	48238525	48238525	C	-	DEL	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	frame_shift_del	c.164	p.S55fs	0.801	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	169	0	0	133	28	16.87	-	-	-	-	48238525	C	-	48238525	7	5	712	1	0	1	0	1	0	0	0	0	11117	913	32	0	166	0	OR4B1	11	48238525	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	419128	48238525	86767991	374	62712	458	2								
OR4B1	0	genome.wustl.edu	37	chr11	48238527	48238527	+	Missense_Mutation	SNP	C	C	T													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagcaagagtctggattctCccatgtacttcttccttagc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	48238527	48238527	C	T	SNP	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	missense	c.166	p.P56S	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	166	0	0	133	32	19.39	-	-	-	T	48238527	C	T	48238527	3	4	712	1	0	0	0	0	1	0	0	0	11117	855	30	2	168	2	OR4B1	11	48238527	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2	48238527	86767989	375	62713	458	2								
SLC43A1	0	genome.wustl.edu	37	chr11	57252590	57252590	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tatgcggtcacctcagagccGctaagcaccttcagtgggcc	11	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	57252590	57252590	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	69_37n	-1	known	silent	c.1659	p.S553	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150	64	0	0	83	14	14.43	-	-	-	A	57252590	G	A	57252590	2	1	712	1	0	0	0	0	0	0	0	1	14721	1078	38	1		1	SLC43A1	11	57252590	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	9014063	57252590	77753926	376	62714										
OR5B12	0	genome.wustl.edu	37	chr11	58207497	58207497	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccagtagaatcaattcaatcAtccccaggttcccaaccaga	5	14	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	58207497	58207497	A	T	SNP	OR5B12	ENST00000302572	human	ensembl	69_37n	-1	known	missense	c.128	p.M43K	0.689	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5B12	HGNC	ENSG00000172362	51	0	0	68	11	13.92	-	-	-	T	58207497	A	T	58207497	3	4	712	1	0	0	0	0	1	0	0	0	11221	217	8	5	820	5	OR5B12	11	58207497	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	954907	58207497	76799019	377	62715										
FAM111A	0	genome.wustl.edu	37	chr11	58919903	58919903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accattttagaaagcacccaGccagttgatgaattagaagg	9	8	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	58919903	58919903	G	A	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	silent	c.762	p.Q254	0.002	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	65	0	0	50	10	16.67	-	-	-	A	58919903	G	A	58919903	2	1	712	1	0	0	0	0	0	0	0	1	5439	962	34	4		4	FAM111A	11	58919903	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	712406	58919903	76086613	378	62716										
MS4A2	0	genome.wustl.edu	37	chr11	59863091	59863091	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagctacttacagtgagttgGaagacccaggggaaatgtct	12	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	59863091	59863091	G	T	SNP	MS4A2	ENST00000278888	human	ensembl	69_37n	1	known	nonsense	c.697	p.E233*	0.998	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	132	0	0	130	16	10.96	-	-	-	T	59863091	G	T	59863091	4	4	712	1	0	0	0	0	0	1	0	0	9932	1175	41	2	774	2	MS4A2	11	59863091	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	943188	59863091	75143425	379	62717										
FADS2	0	genome.wustl.edu	37	chr11	61630806	61630806	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cacagatgaatcacatcgtcAtggagattgaccaggaggcc	11	10	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	61630806	61630806	A	G	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.1033	p.M345V	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	37	0	0	80	16	16.67	-	-	-	G	61630806	A	G	61630806	3	3	712	1	0	0	0	0	1	0	0	0	5406	217	8	5	1067	5	FADS2	11	61630806	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1767715	61630806	73375710	380	62718										
TRMT112	0	genome.wustl.edu	37	chr11	64084564	64084564	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtgcatggtcctcagaaacTcctcattctcctcatatccc	6	15	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	64084564	64084564	T	C	SNP	TRMT112	ENST00000544844	human	ensembl	69_37n	-1	known	missense	c.236	p.E79G	0.001	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	TRMT112	HGNC	ENSG00000173113	74	0	0	114	22	16.18	-	-	-	C	64084564	T	C	64084564	3	2	712	1	0	0	0	0	1	0	0	0	16659	1551	54	5	149	5	TRMT112	11	64084564	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2453758	64084564	70921952	381	62719										
NRXN2	0	genome.wustl.edu	37	chr11	64428483	64428483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgctgctgtccacacctctgGgggcaggggcaggtccaccc	14	15	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	64428483	64428483	G	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.1927	p.P643T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	16	0	0	14	7	33.33	-	-	-	T	64428483	G	T	64428483	3	4	712	1	0	0	0	0	1	0	0	0	10739	1232	43	4	3536	4	NRXN2	11	64428483	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	343919	64428483	70578033	382	62720										
ATG2A	0	genome.wustl.edu	37	chr11	64677214	64677214	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggggaccaggcccactgctAagctctgaccggaactgggg	16	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	64677214	64677214	A	G	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	nonstop	c.1450	p.*484Q	0.973	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	27	0	0	27	7	20	-	-	-	G	64677214	A	G	64677214	4	3	712	1	0	0	0	0	0	0	0	0	1097	349	13	5	3882	5	ATG2A	11	64677214	Nonstop_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	248731	64677214	70329302	383	62721										
NAALADL1	0	genome.wustl.edu	37	chr11	64813977	64813977	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggctgtgtggtaggtggggtAgatcctggctgaagtcttgc	18	6	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	64813977	64813977	A	G	SNP	NAALADL1	ENST00000358658	human	ensembl	69_37n	-1	known	missense	c.1621	p.Y541H	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060	144	0	0	218	30	12.1	-	-	-	G	64813977	A	G	64813977	3	3	712	1	0	0	0	0	1	0	0	0	10201	420	15	5	621	5	NAALADL1	11	64813977	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	136763	64813977	70192539	384	62722										
SF3B2	0	genome.wustl.edu	37	chr11	65826406	65826406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agaaagactcaacccggtccCgtggctctgattccccagca	9	15	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	65826406	65826406	C	T	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	1	known	missense	c.1072	p.R358C	0.627	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	93	0	0	85	25	22.73	-	-	-	T	65826406	C	T	65826406	3	4	712	1	0	0	0	0	1	0	0	0	14239	652	23	1	1110	1	SF3B2	11	65826406	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1012429	65826406	69180110	385	62723										
PACS1	0	genome.wustl.edu	37	chr11	66001353	66001353	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcaggttctttgtcaagtccCtggccaacaagacctccgac	8	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	66001353	66001353	C	A	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	1	known	missense	c.1936	p.L646M	0.928	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	34	0	0	83	21	20.19	-	-	-	A	66001353	C	A	66001353	3	1	712	1	0	0	0	0	1	0	0	0	11445	680	24	4	1998	4	PACS1	11	66001353	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	174947	66001353	69005163	386	62724										
KLC2	0	genome.wustl.edu	37	chr11	66031617	66031617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaggtggaatattactatcGgcgggcactggagatctatg	15	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	66031617	66031617	G	A	SNP	KLC2	ENST00000316924	human	ensembl	69_37n	1	known	missense	c.1043	p.R348Q	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC2	HGNC	ENSG00000174996	24	0	0	37	7	15.91	-	-	-	A	66031617	G	A	66031617	3	1	712	1	0	0	0	0	1	0	0	0	8387	1116	39	1	1069	1	KLC2	11	66031617	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	30264	66031617	68974899	387	62725										
SPTBN2	0	genome.wustl.edu	37	chr11	66458881	66458881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgtgctgcacccgcgccagGgcttggcgtgccccgtgcag	15	15	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	66458881	66458881	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	silent	c.5439	p.A1813	0.999	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	16	0	0	22	10	31.25	-	-	-	A	66458881	G	A	66458881	2	1	712	1	0	0	0	0	0	0	0	1	15211	1219	43	4		4	SPTBN2	11	66458881	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	427264	66458881	68547635	388	62726										
SUV420H1	0	genome.wustl.edu	37	chr11	67925721	67925723	+	In_Frame_Del	DEL	TCT	TCT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcataccttgtgattcgccTcttctttttactttttgcag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	67925721	67925723	TCT	-	DEL	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	in_frame_del	c.2092_2090	p.K697in_frame_del	0.997:0.998:1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	281	0	0	284	32	10.06	-	-	-	-	67925723	TCT	-	67925721	7	5	712	1	0	1	0	1	0	0	0	0	15505	1550	54	0	569	0	SUV420H1	11	67925721	In_Frame_Del	DEL	TCT	TCGA-D8-A1XQ-01A-11D-A14K-09	1466840	67925721	67080795	389	62727										
C2CD3	0	genome.wustl.edu	37	chr11	73809238	73809238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acacatcaatcacaggcatgTagctgtcgacagcaacaact	7	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	73809238	73809238	T	C	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.2795	p.Y932C	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	71	0	0	63	14	18.18	-	-	-	C	73809238	T	C	73809238	3	2	712	1	0	0	0	0	1	0	0	0	2174	1638	57	5	3160	5	C2CD3	11	73809238	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5883517	73809238	61197278	390	62728										
C2CD3	0	genome.wustl.edu	37	chr11	73829363	73829364	+	Frame_Shift_Ins	INS	-	-	T													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagagctgttgactggcttaINStttttttagaagggacgata							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	73829363	73829364	-	T	INS	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1430_1429	p.I477fs	0.967:0.966	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	131	0	0	145	21	12.65	-	-	-	T	73829364	-	T	73829363	7	5	712	1	0	1	1	0	0	0	0	0	2174	449	16	0	4553	0	C2CD3	11	73829363	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	20125	73829363	61177153	391	62729										
UVRAG	0	genome.wustl.edu	37	chr11	75694431	75694431	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgtgattttatttatttagAaaaaaaaaagtgaatgcctg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	75694431	75694431	A	-	DEL	UVRAG	ENST00000356136	human	ensembl	69_37n	1	known	frame_shift_del	c.700	p.S237fs	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	UVRAG	HGNC	ENSG00000198382	41	0	0	32	10	23.81	-	-	-	-	75694431	A	-	75694431	7	5	712	1	0	1	0	1	0	0	0	0	17205	260	9	0	730	0	UVRAG	11	75694431	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1865068	75694431	59312085	392	62730										
PCF11	0	genome.wustl.edu	37	chr11	82895807	82895807	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgaacattgtcaaaaacgaAttgcaggaaccctgtgacag	9	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	82895807	82895807	A	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	missense	c.4539	p.E1513D	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	167	0	0	155	28	15.22	-	-	-	T	82895807	A	T	82895807	3	4	712	1	0	0	0	0	1	0	0	0	11646	98	4	5	4601	5	PCF11	11	82895807	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	7201376	82895807	52110709	393	62731										
CHORDC1	0	genome.wustl.edu	37	chr11	89944425	89944425	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgatgacagtttaagtttatCaagtgcttgttttagggagg	12	3	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	89944425	89944425	C	T	SNP	CHORDC1	ENST00000320585	human	ensembl	69_37n	-1	known	missense	c.391	p.D131N	1.000	NULL	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	CHORDC1	HGNC	ENSG00000110172	268	0	0	258	80	23.6	-	-	-	T	89944425	C	T	89944425	3	4	712	1	0	0	0	0	1	0	0	0	3394	826	29	2	635	2	CHORDC1	11	89944425	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	7048618	89944425	45062091	394	62732										
FAT3	0	genome.wustl.edu	37	chr11	92086398	92086398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccacaagagacactgtccccAttagatttgaaaaagaagtg	8	9	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	92086398	92086398	A	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.1120	p.I374V	0.018	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	134	0	0	130	17	11.49	-	-	-	G	92086398	A	G	92086398	3	3	712	1	0	0	0	0	1	0	0	0	5737	217	8	5	1122	5	FAT3	11	92086398	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	2141973	92086398	42920118	395	62733										
FAT3	0	genome.wustl.edu	37	chr11	92573800	92573800	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actcctttcacaatgggcctCccttttcattctctattttg	4	13	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	92573800	92573800	C	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.10441	p.P3481A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	104	0	0	139	32	18.71	-	-	-	G	92573800	C	G	92573800	3	3	712	1	0	0	0	0	1	0	0	0	5737	855	30	2	10507	2	FAT3	11	92573800	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	487402	92573800	42432716	396	62734										
TRPC6	0	genome.wustl.edu	37	chr11	101324385	101324385	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctgcgttcaactcaccttcGttcacttcatcactctcctt	3	16	7	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	101324385	101324385	G	A	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	silent	c.2640	p.N880	0.996	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	242	2	0.82	269	36	11.8	-	-	-	A	101324385	G	A	101324385	2	1	712	1	0	0	0	0	0	0	0	1	16679	1136	40	1		1	TRPC6	11	101324385	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8750585	101324385	33682131	397	62735										
NPAT	0	genome.wustl.edu	37	chr11	108062883	108062883	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggtccaatttcttccatagAgatgacattattgctgggac	9	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	108062883	108062883	A	C	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	silent	c.252	p.S84	0.999	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	227	0	0	306	84	21.54	-	-	-	C	108062883	A	C	108062883	2	2	712	1	0	0	0	0	0	0	0	1	10638	291	11	5		5	NPAT	11	108062883	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	6738498	108062883	26943633	398	62736										
EXPH5	0	genome.wustl.edu	37	chr11	108382318	108382318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcacatgaaggtgttcctgActgctctcgtgtagaataat	9	8	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	108382318	108382318	A	G	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.3916	p.S1306P	0.000	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	122	0	0	174	22	11.22	-	-	-	G	108382318	A	G	108382318	3	3	712	1	0	0	0	0	1	0	0	0	5359	275	10	5	2057	5	EXPH5	11	108382318	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	319435	108382318	26624198	399	62737										
TIMM8B	0	genome.wustl.edu	37	chr11	111956054	111956054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgtacaatctgggcaaaccGactggtgatggcaagagtgg	14	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	111956054	111956054	G	A	SNP	TIMM8B	ENST00000541231	human	ensembl	69_37n	-1	known	missense	c.262	p.R88W	1.000	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM8B	HGNC	ENSG00000150779	129	0	0	163	20	10.93	-	-	-	A	111956054	G	A	111956054	3	1	712	1	0	0	0	0	1	0	0	0	16010	1057	37	1	38	1	TIMM8B	11	111956054	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3573736	111956054	23050462	400	62738										
SIK3	0	genome.wustl.edu	37	chr11	116827664	116827664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctatacactaatgatcctacCtggtagagcctgatgatatg	8	9	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	116827664	116827664	C	T	SNP	SIK3	ENST00000445177	human	ensembl	69_37n	-1	novel	missense	c.370	p.G124S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIK3	HGNC	ENSG00000160584	162	0	0	187	37	16.52	-	-	-	T	116827664	C	T	116827664	3	4	712	1	0	0	0	0	1	0	0	0	14408	695	24	4	3663	4	SIK3	11	116827664	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4871610	116827664	18178852	401	62739										
SIDT2	0	genome.wustl.edu	37	chr11	117060973	117060973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacgggagatcaaccacaacCgggccctgctgcgcaatgac	11	14	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	117060973	117060973	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	69_37n	1	known	missense	c.1648	p.R550W	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	84	0	0	128	27	17.42	-	-	-	T	117060973	C	T	117060973	3	4	712	1	0	0	0	0	1	0	0	0	14392	643	23	1	1651	1	SIDT2	11	117060973	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	233309	117060973	17945543	402	62740										
NLRX1	0	genome.wustl.edu	37	chr11	119050981	119050981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cactcctgcctgtcttcctgCgtgcccggaagctggggtga	13	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	119050981	119050981	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	missense	c.2251	p.R751C	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	14	0	0	13	4	23.53	-	-	-	T	119050981	C	T	119050981	3	4	712	1	0	0	0	0	1	0	0	0	10557	768	27	1	2273	1	NLRX1	11	119050981	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1990008	119050981	15955535	403	62741										
BSX	0	genome.wustl.edu	37	chr11	122848486	122848486	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcggcggtggcggcctctgaAccgcgggggctgccctcggg	20	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	122848486	122848486	A	G	SNP	BSX	ENST00000343035	human	ensembl	69_37n	-1	known	silent	c.573	p.G191	0.014	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	BSX	HGNC	ENSG00000188909	57	0	0	57	7	10.94	-	-	-	G	122848486	A	G	122848486	2	3	712	1	0	0	0	0	0	0	0	1	1543	30	2	5		5	BSX	11	122848486	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3797505	122848486	12158030	404	62742										
ROBO3	0	genome.wustl.edu	37	chr11	124748247	124748247	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacctgtgcagatgccctctCtgaactggccagaagccctg	10	14	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	11	124748247	124748247	C	G	SNP	ROBO3	ENST00000397801	human	ensembl	69_37n	1	known	missense	c.3235	p.L1079V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO3	HGNC	ENSG00000154134	58	0	0	18	51	73.91	-	-	-	G	124748247	C	G	124748247	3	3	712	1	0	0	0	0	1	0	0	0	13601	912	32	2	3321	2	ROBO3	11	124748247	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1899761	124748247	10258269	405	62743										
IQSEC3	0	genome.wustl.edu	37	chr12	280295	280295	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagccaaaagggaagccgcgCtcagggagaggccggcggag	18	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	280295	280295	C	G	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.3082	p.L1028V	0.041	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	158	0	0	119	30	20.13	-	-	-	G	280295	C	G	280295	3	3	712	1	0	0	0	0	1	0	0	0	7873	797	28	4	3132	4	IQSEC3	12	280295	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		280295	133571600	406	62744										
MANSC1	0	genome.wustl.edu	37	chr12	12483263	12483263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agggttatacacattccctgTgttcaaagttaggttggaga	11	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	12483263	12483263	T	C	SNP	MANSC1	ENST00000535902	human	ensembl	69_37n	-1	known	missense	c.994	p.T332A	0.000	NULL	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	-	no_errors	MANSC1	HGNC	ENSG00000111261	106	0	0	53	28	34.57	-	-	-	C	12483263	T	C	12483263	3	2	712	1	0	0	0	0	1	0	0	0	9295	1696	59	5	305	5	MANSC1	12	12483263	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	12202968	12483263	121368632	407	62745										
GRIN2B	0	genome.wustl.edu	37	chr12	13717034	13717034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcgtggccactgtagcggtcGctcttgaaggagaatttgcc	13	10	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	13717034	13717034	G	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.3138	p.S1046	0.886	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	59	0	0	35	11	23.91	-	-	-	A	13717034	G	A	13717034	2	1	712	1	0	0	0	0	0	0	0	1	6831	1078	38	1		1	GRIN2B	12	13717034	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1233771	13717034	120134861	408	62746										
BCAT1	0	genome.wustl.edu	37	chr12	25031486	25031486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagttccaatgaatgtaggaCgaatatacagactagcagat	9	7	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	25031486	25031486	C	T	SNP	BCAT1	ENST00000261192	human	ensembl	69_37n	-1	known	missense	c.488	p.R163H	1.000	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982	100	0	0	132	18	12	-	-	-	T	25031486	C	T	25031486	3	4	712	1	0	0	0	0	1	0	0	0	1358	536	19	1	700	1	BCAT1	12	25031486	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	11314452	25031486	108820409	409	62747										
ITPR2	0	genome.wustl.edu	37	chr12	26564309	26564309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttggcacatgcttccatcAtggtagttaaagtcatagta	8	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	26564309	26564309	A	G	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.7343	p.M2448T	0.948	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	149	0	0	143	37	20.56	-	-	-	G	26564309	A	G	26564309	3	3	712	1	0	0	0	0	1	0	0	0	7975	217	8	5	786	5	ITPR2	12	26564309	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1532823	26564309	107287586	410	62748										
IPO8	0	genome.wustl.edu	37	chr12	30787096	30787096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtactgaacccctcaagcgcGgtttcttccaatacttcttc	6	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	30787096	30787096	G	A	SNP	IPO8	ENST00000535598	human	ensembl	69_37n	-1	putative	missense	c.293	p.P98L	0.521	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IPO8	HGNC	ENSG00000133704	244	1	0.41	237	46	16.25	-	-	-	A	30787096	G	A	30787096	3	1	712	1	0	0	0	0	1	0	0	0	7852	1103	39	1	305	1	IPO8	12	30787096	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4222787	30787096	103064799	411	62749										
AMN1	0	genome.wustl.edu	37	chr12	31850719	31850719	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcaaaaatgggcagtttttTcctaatgcatgtaaggacac	9	7	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	31850719	31850719	T	C	SNP	AMN1	ENST00000281471	human	ensembl	69_37n	-1	known	silent	c.489	p.G163	0.784	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	AMN1	HGNC	ENSG00000151743	112	0	0	106	24	18.46	-	-	-	C	31850719	T	C	31850719	2	2	712	1	0	0	0	0	0	0	0	1	581	1770	62	5		5	AMN1	12	31850719	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1063623	31850719	102001176	412	62750										
LRRK2	0	genome.wustl.edu	37	chr12	40704388	40704388	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taccactttgtgaatgccacCgaggaatctgatgctttggc	10	10	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	40704388	40704388	C	G	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	silent	c.4473	p.T1491	0.004	smart_Small_GTPase_Rab_type	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	93	0	0	71	48	40.34	-	-	-	G	40704388	C	G	40704388	2	3	712	1	0	0	0	0	0	0	0	1	9099	639	23	3		3	LRRK2	12	40704388	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8853669	40704388	93147507	413	62751										
SLC38A2	0	genome.wustl.edu	37	chr12	46760683	46760683	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttcgttaatgcctggatcAccaaaggcaactcatatttc	7	10	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	46760683	46760683	A	G	SNP	SLC38A2	ENST00000256689	human	ensembl	69_37n	-1	known	missense	c.527	p.V176A	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294	125	0	0	61	32	34.04	-	-	-	G	46760683	A	G	46760683	3	3	712	1	0	0	0	0	1	0	0	0	14693	159	6	5	1033	5	SLC38A2	12	46760683	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	6056295	46760683	87091212	414	62752										
MLL2	0	genome.wustl.edu	37	chr12	49421616	49421616	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggctcaagatgtctagttgGctcttcagggtatagccagg	13	8	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	49421616	49421616	G	C	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.14613	p.S4871R	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	118	1	0.84	75	15	16.67	-	-	-	C	49421616	G	C	49421616	3	2	712	1	0	0	0	0	1	0	0	0	9692	1194	42	4	2032	4	MLL2	12	49421616	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2660933	49421616	84430279	415	62753										
TUBA1C	0	genome.wustl.edu	37	chr12	49666773	49666773	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcggagacctggccaaggtAcagagagctgtgtgcatgct	16	9	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	49666773	49666773	A	G	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	1	known	silent	c.1113	p.V371	0.773	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	114	0	0	63	18	22.22	-	-	-	G	49666773	A	G	49666773	2	3	712	1	0	0	0	0	0	0	0	1	16842	378	14	5		5	TUBA1C	12	49666773	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	245157	49666773	84185122	416	62754										
FMNL3	0	genome.wustl.edu	37	chr12	50045842	50045842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggcatgccctcactcagctCtgcagggcctactctggcca	10	16	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	50045842	50045842	C	G	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1477	p.E493Q	0.986	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	33	0	0	23	6	20.69	-	-	-	G	50045842	C	G	50045842	3	3	712	1	0	0	0	0	1	0	0	0	5999	922	32	2	1658	2	FMNL3	12	50045842	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	379069	50045842	83806053	417	62755										
AMHR2	0	genome.wustl.edu	37	chr12	53818998	53818998	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggggctgttcctcctcctCctgctgctgctgggcagcat	12	15	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	53818998	53818998	C	G	SNP	AMHR2	ENST00000257863	human	ensembl	69_37n	1	known	silent	c.474	p.L158	0.063	pirsf_Anti-muellerian_hrmn_rcpt_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Anti-muellerian_hrmn_rcpt_II,pfscan_Prot_kinase_cat_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	104	1	0.95	92	14	12.96	-	-	-	G	53818998	C	G	53818998	2	3	712	1	0	0	0	0	0	0	0	1	573	842	30	2		2	AMHR2	12	53818998	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3773156	53818998	80032897	418	62756										
OR6C65	0	genome.wustl.edu	37	chr12	55794567	55794567	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttctgatcaacattgctacAggagacacaaccatttccta	5	11	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	55794567	55794567	A	G	SNP	OR6C65	ENST00000379665	human	ensembl	69_37n	1	known	silent	c.255	p.T85	0.009	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C65	HGNC	ENSG00000205328	116	0	0	47	17	26.56	-	-	-	G	55794567	A	G	55794567	2	3	712	1	0	0	0	0	0	0	0	1	11268	175	7	5		5	OR6C65	12	55794567	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1975569	55794567	78057328	419	62757										
LRP1	0	genome.wustl.edu	37	chr12	57578941	57578941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcccctgcgaaccggcatcgGcgtccagcttaaagacatca	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	57578941	57578941	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.6416	p.G2139D	0.997	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	65	0	0	41	14	25.45	-	-	-	A	57578941	G	A	57578941	3	1	712	1	0	0	0	0	1	0	0	0	9017	1203	42	4	6574	4	LRP1	12	57578941	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1784374	57578941	76272954	420	62758										
PPFIA2	0	genome.wustl.edu	37	chr12	81777849	81777849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttcatttcttctgttttaaTgagatcctttcttgctgtct	6	8	5	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	81777849	81777849	T	C	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.937	p.I313V	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	217	0	0	226	44	16.3	-	-	-	C	81777849	T	C	81777849	3	2	712	1	0	0	0	0	1	0	0	0	12383	1464	51	5	2932	5	PPFIA2	12	81777849	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	24198908	81777849	52074046	421	62759										
HAL	0	genome.wustl.edu	37	chr12	96368029	96368029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attaaaggtcctcagactccGggattttggtggatttcttg	11	7	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	96368029	96368029	G	A	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.1955	p.P652L	0.809	NULL	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	191	0	0	184	30	14.02	-	-	-	A	96368029	G	A	96368029	3	1	712	1	0	0	0	0	1	0	0	0	6998	1116	39	1	22	1	HAL	12	96368029	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	14590180	96368029	37483866	422	62760										
APAF1	0	genome.wustl.edu	37	chr12	99120975	99120977	+	In_Frame_Del	DEL	CTT	CTT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaatgtctcaaacggtgagCttcttcatttgtgtgctccg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	99120975	99120977	CTT	-	DEL	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	in_frame_del	c.3481_3483	p.L1162in_frame_del	0.964:0.926:0.099	superfamily_WD40_repeat_dom,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	131	0	0	145	19	11.52	-	-	-	-	99120977	CTT	-	99120975	7	5	712	1	0	1	0	1	0	0	0	0	756	797	28	0	3579	0	APAF1	12	99120975	In_Frame_Del	DEL	CTT	TCGA-D8-A1XQ-01A-11D-A14K-09	2752946	99120975	34730920	423	62761										
ANO4	0	genome.wustl.edu	37	chr12	101437324	101437324	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttctcttttccagtaaagaaGtctgccaagctacagatatc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	101437324	101437324	G	-	DEL	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	frame_shift_del	c.1162	p.V388fs	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	149	0	0	136	21	13.04	-	-	-	-	101437324	G	-	101437324	7	5	712	1	0	1	0	1	0	0	0	0	698	1029	36	0	1099	0	ANO4	12	101437324	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2316349	101437324	32414571	424	62762										
KIAA1033	0	genome.wustl.edu	37	chr12	105512306	105512306	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgccctctatatcagtaacaAgtaatggattttagaaatat	6	6	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	105512306	105512306	A	C	SNP	KIAA1033	ENST00000332180	human	ensembl	69_37n	1	known	missense	c.518	p.K173T	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	156	0	0	131	29	18.12	-	-	-	C	105512306	A	C	105512306	3	2	712	1	0	0	0	0	1	0	0	0	8258	86	3	5	544	5	KIAA1033	12	105512306	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4074982	105512306	28339589	425	62763										
UBE3B	0	genome.wustl.edu	37	chr12	109959091	109959091	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggagttcttggaagagatcAtcaagagagtttttgaccca	11	6	3	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	109959091	109959091	A	T	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.2215	p.I739F	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	121	0	0	73	17	18.89	-	-	-	T	109959091	A	T	109959091	3	4	712	1	0	0	0	0	1	0	0	0	16977	217	8	5	2285	5	UBE3B	12	109959091	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4446785	109959091	23892804	426	62764										
PPTC7	0	genome.wustl.edu	37	chr12	110989696	110989696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcttttactaaacgttcacAcgtccgcattaaagtccctg	5	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	110989696	110989696	A	G	SNP	PPTC7	ENST00000354300	human	ensembl	69_37n	-1	known	missense	c.301	p.C101R	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPTC7	HGNC	ENSG00000196850	80	0	0	47	11	18.97	-	-	-	G	110989696	A	G	110989696	3	3	712	1	0	0	0	0	1	0	0	0	12490	159	6	5	633	5	PPTC7	12	110989696	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1030605	110989696	22862199	427	62765										
TCTN1	0	genome.wustl.edu	37	chr12	111064185	111064185	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggggcgacagccagttttgTagtcaaaaagcagtcatcta	11	8	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	111064185	111064185	T	C	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	1	known	silent	c.360	p.C120	0.995	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	169	0	0	95	28	22.76	-	-	-	C	111064185	T	C	111064185	2	2	712	1	0	0	0	0	0	0	0	1	15817	1644	57	5		5	TCTN1	12	111064185	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	74489	111064185	22787710	428	62766										
HVCN1	0	genome.wustl.edu	37	chr12	111089114	111089114	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaacaggaggacaatgtcgAggatgaatgagaccaccacc	13	9	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	111089114	111089114	A	T	SNP	HVCN1	ENST00000242607	human	ensembl	69_37n	-1	known	missense	c.551	p.L184H	0.988	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986	87	0	0	49	8	14.04	-	-	-	T	111089114	A	T	111089114	3	4	712	1	0	0	0	0	1	0	0	0	7516	304	11	5	282	5	HVCN1	12	111089114	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	24929	111089114	22762781	429	62767										
ATXN2	0	genome.wustl.edu	37	chr12	111923661	111923661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtgaagttggggtagtagaAggctttggctacaaaaacaa	14	4	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	111923661	111923661	A	C	SNP	ATXN2	ENST00000483311	human	ensembl	69_37n	-1	known	missense	c.2555	p.L852R	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATXN2	HGNC	ENSG00000204842	176	0	0	162	39	19.31	-	-	-	C	111923661	A	C	111923661	3	2	712	1	0	0	0	0	1	0	0	0	1215	59	3	5	1184	5	ATXN2	12	111923661	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	834547	111923661	21928234	430	62768										
ATXN2	0	genome.wustl.edu	37	chr12	111956157	111956157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atccaggctggcccatacgcGgtgaattctgtctcccactt	9	14	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	111956157	111956157	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	69_37n	-1	known	missense	c.1541	p.P514L	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	58	0	0	67	8	10.67	-	-	-	A	111956157	G	A	111956157	3	1	712	1	0	0	0	0	1	0	0	0	1215	1116	39	1	2468	1	ATXN2	12	111956157	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	32496	111956157	21895738	431	62769										
P2RX4	0	genome.wustl.edu	37	chr12	121654940	121654940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgttttattttataggtgGgtgtttgtgtgggaaaaggg	15	2	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	121654940	121654940	G	T	SNP	P2RX4	ENST00000337233	human	ensembl	69_37n	1	known	missense	c.138	p.W46C	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124	305	1	0.33	250	55	18.03	-	-	-	T	121654940	G	T	121654940	3	4	712	1	0	0	0	0	1	0	0	0	11415	1241	43	4	144	4	P2RX4	12	121654940	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	9698783	121654940	12196955	432	62770										
ANAPC5	0	genome.wustl.edu	37	chr12	121785621	121785621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttacctgatctgcactgaatTtgccagctgtggacaagact	9	10	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	121785621	121785621	T	C	SNP	ANAPC5	ENST00000261819	human	ensembl	69_37n	-1	known	missense	c.271	p.N91D	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	185	0	0	137	45	24.73	-	-	-	C	121785621	T	C	121785621	3	2	712	1	0	0	0	0	1	0	0	0	605	1841	64	5	2060	5	ANAPC5	12	121785621	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	130681	121785621	12066274	433	62771										
KDM2B	0	genome.wustl.edu	37	chr12	122017957	122017957	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agagtctttctctgcctccaTttttttaggagagttcacca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	122017957	122017957	T	-	DEL	KDM2B	ENST00000377069	human	ensembl	69_37n	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	123	0	0	102	22	17.6	-	-	-	-	122017957	T	-	122017957	7	5	712	1	0	1	0	1	0	0	0	0	8179	1493	52	0	4060	0	KDM2B	12	122017957	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	232336	122017957	11833938	434	62772										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123703048	123703048	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccatgatgttatagcattacTatttaagaagagaaaaccaa	6	6	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	123703048	123703048	T	A	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	splice_site	c.417-2	e2-2	0.885	-	-	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	240	0	0	153	26	14.53	-	-	-	A	123703048	T	A	123703048	5	1	712	1	0	0	0	0	0	0	1	0	9800	1536	53	5	2756	5	MPHOSPH9	12	123703048	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1685091	123703048	10148847	435	62773										
CCDC92	0	genome.wustl.edu	37	chr12	124428025	124428025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaggtttgtggctgccatgCtgacatccagaggacctgtg	13	11	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	124428025	124428025	C	T	SNP	CCDC92	ENST00000238156	human	ensembl	69_37n	-1	known	missense	c.50	p.S17N	0.997	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242	46	0	0	55	15	21.43	-	-	-	T	124428025	C	T	124428025	3	4	712	1	0	0	0	0	1	0	0	0	2898	797	28	4	957	4	CCDC92	12	124428025	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	724977	124428025	9423870	436	62774										
EP400	0	genome.wustl.edu	37	chr12	132546701	132546701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtggtgcacacccagccccCgccacgggcagtcggctccc	13	19	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	132546701	132546701	C	T	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.8039	p.P2680L	0.979	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	27	0	0	26	7	20.59	-	-	-	T	132546701	C	T	132546701	3	4	712	1	0	0	0	0	1	0	0	0	5186	652	23	1	8106	1	EP400	12	132546701	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8118676	132546701	1305194	437	62775										
POLE	0	genome.wustl.edu	37	chr12	133201511	133201511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgggtgtggatggtgagggCgaagtctcccgcgcagctgc	18	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	133201511	133201511	C	T	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.6760	p.A2254T	0.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	66	0	0	56	14	19.18	-	-	-	T	133201511	C	T	133201511	3	4	712	1	0	0	0	0	1	0	0	0	12270	768	27	1	141	1	POLE	12	133201511	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	654810	133201511	650384	438	62776										
PGAM5	0	genome.wustl.edu	37	chr12	133291511	133291511	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggggaagaagagctggcgTccaagctggaccactacaaa	13	10	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	12	133291511	133291511	T	G	SNP	PGAM5	ENST00000498926	human	ensembl	69_37n	1	known	missense	c.259	p.S87A	0.031	NULL	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	PGAM5	HGNC	ENSG00000247077	72	0	0	75	12	13.79	-	-	-	G	133291511	T	G	133291511	3	3	712	1	0	0	0	0	1	0	0	0	11850	1667	58	5	265	5	PGAM5	12	133291511	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	90000	133291511	560384	439	62777										
SACS	0	genome.wustl.edu	37	chr13	23915510	23915510	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctgctaaaaattctggaagCtgtgcttcagattcatcgtc	8	9	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	23915510	23915510	C	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.2505	p.Q835H	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	120	0	0	92	23	20	-	-	-	G	23915510	C	G	23915510	3	3	712	1	0	0	0	0	1	0	0	0	13890	796	28	4	11238	4	SACS	13	23915510	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		23915510	91254368	440	62778										
MIPEP	0	genome.wustl.edu	37	chr13	24443487	24443487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagaaaacgtggaataccccAccaactttgccagaagatct	8	11	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	24443487	24443487	A	T	SNP	MIPEP	ENST00000382172	human	ensembl	69_37n	-1	known	missense	c.887	p.V296E	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001	121	0	0	46	38	45.24	-	-	-	T	24443487	A	T	24443487	3	4	712	1	0	0	0	0	1	0	0	0	9663	159	6	5	1306	5	MIPEP	13	24443487	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	527977	24443487	90726391	441	62779										
B3GALTL	0	genome.wustl.edu	37	chr13	31797103	31797103	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atacaggatttggagaaaagTggtatatcaaggaaaaatga	11	2	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	31797103	31797103	T	C	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	silent	c.135	p.S45	0.707	NULL	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	252	0	0	200	39	16.32	-	-	-	C	31797103	T	C	31797103	2	2	712	1	0	0	0	0	0	0	0	1	1256	1693	59	5		5	B3GALTL	13	31797103	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	7353616	31797103	83372775	442	62780										
NBEA	0	genome.wustl.edu	37	chr13	35632987	35632987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atttgcaattcatcagttagGacctggatataaggtagtaa	9	5	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	35632987	35632987	G	C	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.1226	p.G409A	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	101	0	0	87	11	11.22	-	-	-	C	35632987	G	C	35632987	3	2	712	1	0	0	0	0	1	0	0	0	10259	1174	41	2	1256	2	NBEA	13	35632987	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3835884	35632987	79536891	443	62781										
FREM2	0	genome.wustl.edu	37	chr13	39446912	39446912	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcagtcctatgtgacccttCgagtccctctgtatgtttcc	8	13	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	39446912	39446912	C	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	silent	c.8017	p.R2673	0.999	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	128	0	0	84	40	32	-	-	-	A	39446912	C	A	39446912	2	1	712	1	0	0	0	0	0	0	0	1	6094	876	31	3		3	FREM2	13	39446912	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3813925	39446912	75722966	444	62782										
ELF1	0	genome.wustl.edu	37	chr13	41507736	41507736	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttcctgtgtaagagtttttGtttcttgagttttgataact	8	5	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	41507736	41507736	G	C	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	missense	c.1685	p.T562R	0.975	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	107	0	0	125	15	10.71	-	-	-	C	41507736	G	C	41507736	3	2	712	1	0	0	0	0	1	0	0	0	5090	1377	48	4	178	4	ELF1	13	41507736	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2060824	41507736	73662142	445	62783										
ENOX1	0	genome.wustl.edu	37	chr13	43986108	43986108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccatgcccaggttattcatgGctgtagcccaggctgtggga	13	11	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	43986108	43986108	G	A	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	missense	c.152	p.A51V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	104	0	0	133	15	10.14	-	-	-	A	43986108	G	A	43986108	3	1	712	1	0	0	0	0	1	0	0	0	5163	1203	42	4	1831	4	ENOX1	13	43986108	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2478372	43986108	71183770	446	62784										
KIAA1704	0	genome.wustl.edu	37	chr13	45589722	45589722	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actccagctgatagggaaagGaaagctaaggtgagaggttt	14	5	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	45589722	45589722	G	C	SNP	KIAA1704	ENST00000361121	human	ensembl	69_37n	1	known	missense	c.696	p.R232S	1.000	pfam_DUF3752	pfam_DUF3752	-	no_errors	KIAA1704	HGNC	ENSG00000133114	74	0	0	53	16	23.19	-	-	-	C	45589722	G	C	45589722	3	2	712	1	0	0	0	0	1	0	0	0	8304	1165	41	2	718	2	KIAA1704	13	45589722	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1603614	45589722	69580156	447	62785										
RB1	0	genome.wustl.edu	37	chr13	48936996	48936996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcacctcgaacacccaggcGaggtcagaacaggagtgcac	11	13	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	48936996	48936996	G	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	missense	c.764	p.R255Q	1.000	NULL	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	131	0	0	183	26	12.44	-	-	-	A	48936996	G	A	48936996	3	1	712	1	0	0	0	0	1	0	0	0	13181	1058	37	1	794	1	RB1	13	48936996	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3347274	48936996	66232882	448	62786										
RCBTB2	0	genome.wustl.edu	37	chr13	49089817	49089817	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcttcttcagaacaaagggAaaaaattggccactttccca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	49089817	49089817	A	-	DEL	RCBTB2	ENST00000430805	human	ensembl	69_37n	-1	known	frame_shift_del	c.118	p.S40fs	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161	67	0	0	65	11	14.1	-	-	-	-	49089817	A	-	49089817	7	5	712	1	0	1	0	1	0	0	0	0	13255	246	9	0	1596	0	RCBTB2	13	49089817	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	152821	49089817	66080061	449	62787										
FNDC3A	0	genome.wustl.edu	37	chr13	49760124	49760124	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgcttacaactcagaaggtAaaagtaatccaagtgaagta							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	49760124	49760124	A	-	DEL	FNDC3A	ENST00000492622	human	ensembl	69_37n	1	known	frame_shift_del	c.1642	p.S549fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	68	0	0	78	15	15.79	-	-	-	-	49760124	A	-	49760124	7	5	712	1	0	1	0	1	0	0	0	0	6015	363	13	0	1707	0	FNDC3A	13	49760124	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	670307	49760124	65409754	450	62788										
CAB39L	0	genome.wustl.edu	37	chr13	49933960	49933960	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttaaatatctgggtcacatcTttttttccctgttaaagaaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	49933960	49933960	T	-	DEL	CAB39L	ENST00000347776	human	ensembl	69_37n	-1	known	frame_shift_del	c.285	p.D96fs	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547	86	0	0	103	21	16.94	-	-	-	-	49933960	T	-	49933960	7	5	712	1	0	1	0	1	0	0	0	0	2551	1606	56	0	752	0	CAB39L	13	49933960	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	173836	49933960	65235918	451	62789										
DACH1	0	genome.wustl.edu	37	chr13	72063246	72063246	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agagagagtttgtcaaggctGtctcttgcggttggtgtaga							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	72063246	72063246	G	-	DEL	DACH1	ENST00000359684	human	ensembl	69_37n	-1	known	frame_shift_del	c.1767	p.D589fs	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	51	0	0	49	7	12.5	-	-	-	-	72063246	G	-	72063246	7	5	712	1	0	1	0	1	0	0	0	0	4252	1368	48	0	535	0	DACH1	13	72063246	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	22129286	72063246	43106632	452	62790										
MYCBP2	0	genome.wustl.edu	37	chr13	77655723	77655723	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actgccaatcatggcaggtcGgcttgaagtttttatgtcaa	10	8	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	77655723	77655723	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	nonsense	c.11257	p.R3753*	1.000	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	148	0	0	105	24	18.6	-	-	-	A	77655723	G	A	77655723	4	1	712	1	0	0	0	0	0	1	0	0	10090	1124	39	1	2855	1	MYCBP2	13	77655723	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5592477	77655723	37514155	453	62791										
SCEL	0	genome.wustl.edu	37	chr13	78202091	78202091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttttccttagagaccagaaCctggaaaatttaattgaagt	7	6	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	78202091	78202091	C	A	SNP	SCEL	ENST00000349847	human	ensembl	69_37n	1	known	missense	c.1638	p.N546K	0.195	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	50	0	0	20	7	25.93	-	-	-	A	78202091	C	A	78202091	3	1	712	1	0	0	0	0	1	0	0	0	13975	506	18	4	1744	4	SCEL	13	78202091	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	546368	78202091	36967787	454	62792										
DOCK9	0	genome.wustl.edu	37	chr13	99550452	99550452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttgctgcccaagcaaatgGcattctatactgtcctagtc	7	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	99550452	99550452	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	69_37n	-1	known	missense	c.1570	p.P524S	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387	106	0	0	139	17	10.9	-	-	-	A	99550452	G	A	99550452	3	1	712	1	0	0	0	0	1	0	0	0	4729	1203	42	4	4872	4	DOCK9	13	99550452	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	21348361	99550452	15619426	455	62793										
GPR183	0	genome.wustl.edu	37	chr13	99947890	99947890	+	Silent	SNP	A	A	T													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagcctcctgctttgacatAgggttgatgaggagtgggag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	99947890	99947890	A	T	SNP	GPR183	ENST00000376414	human	ensembl	69_37n	-1	known	silent	c.510	p.P170	0.015	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR183	HGNC	ENSG00000169508	110	0	0	111	66	37.29	-	-	-	T	99947890	A	T	99947890	2	4	712	1	0	0	0	0	0	0	0	1	6728	407	15	5		5	GPR183	13	99947890	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	397438	99947890	15221988	456	62794	459	2								
GPR183	0	genome.wustl.edu	37	chr13	99947891	99947891	+	Missense_Mutation	SNP	G	G	A													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcctcctgctttgacataGggttgatgaggagtgggagt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	99947891	99947891	G	A	SNP	GPR183	ENST00000376414	human	ensembl	69_37n	-1	known	missense	c.509	p.P170L	0.040	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR183	HGNC	ENSG00000169508	109	0	0	114	64	35.96	-	-	-	A	99947891	G	A	99947891	3	1	712	1	0	0	0	0	1	0	0	0	6728	1000	35	4	580	4	GPR183	13	99947891	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1	99947891	15221987	457	62795	459	2								
ADPRHL1	0	genome.wustl.edu	37	chr13	114107723	114107723	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agagcatcgccgacgctcccCagcaacatcgcagccttaaa	8	16	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	13	114107723	114107723	C	T	SNP	ADPRHL1	ENST00000375418	human	ensembl	69_37n	-1	known	silent	c.30	p.L10	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRHL1	HGNC	ENSG00000153531	50	0	0	51	23	30.67	-	-	-	T	114107723	C	T	114107723	2	4	712	1	0	0	0	0	0	0	0	1	332	581	21	4		4	ADPRHL1	13	114107723	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	14159832	114107723	1062155	458	62796										
OR11G2	0	genome.wustl.edu	37	chr14	20666270	20666270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgtggggtcctatgctctggTcgtgagagctgtgttgaggg	18	6	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	20666270	20666270	T	C	SNP	OR11G2	ENST00000357366	human	ensembl	69_37n	1	known	missense	c.776	p.V259A	0.347	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	166	0	0	131	51	28.02	-	-	-	C	20666270	T	C	20666270	3	2	712	1	0	0	0	0	1	0	0	0	10998	1667	58	5	778	5	OR11G2	14	20666270	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09		20666270	86683270	459	62797										
TEP1	0	genome.wustl.edu	37	chr14	20836967	20836967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acacacttaccagctgcataCtgggtctctcccatagctta	6	14	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	20836967	20836967	C	T	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.7751	p.S2584N	0.996	pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	70	0	0	69	11	13.75	-	-	-	T	20836967	C	T	20836967	3	4	712	1	0	0	0	0	1	0	0	0	15854	565	20	4	140	4	TEP1	14	20836967	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	170697	20836967	86512573	460	62798										
OR6S1	0	genome.wustl.edu	37	chr14	21109823	21109823	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggacgaactctgttggatCactactgtggttcccatcag	10	11	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	21109823	21109823	C	A	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	missense	c.28	p.D10Y	0.050	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	31	0	0	29	7	19.44	-	-	-	A	21109823	C	A	21109823	3	1	712	1	0	0	0	0	1	0	0	0	11282	826	29	2	971	2	OR6S1	14	21109823	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	272856	21109823	86239717	461	62799										
RNASE7	0	genome.wustl.edu	37	chr14	21511522	21511522	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaactgcaggtacaaagagaAgcgacagaacaagtcttacg	11	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	21511522	21511522	A	T	SNP	RNASE7	ENST00000298690	human	ensembl	69_37n	1	known	missense	c.371	p.K124M	0.002	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE7	HGNC	ENSG00000165799	80	0	0	88	16	15.38	-	-	-	T	21511522	A	T	21511522	3	4	712	1	0	0	0	0	1	0	0	0	13494	72	3	5	373	5	RNASE7	14	21511522	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	401699	21511522	85838018	462	62800										
OXA1L	0	genome.wustl.edu	37	chr14	23237317	23237317	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acaccccagtgggactgatcCagaatttactggaatttatg	9	9	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	23237317	23237317	C	T	SNP	OXA1L	ENST00000285848	human	ensembl	69_37n	1	known	nonsense	c.556	p.Q186*	1.000	NULL	pfam_Membrane_insertion_OxaA/YidC,tigrfam_Membrane_insertion_OxaA/YidC	-	no_errors	OXA1L	HGNC	ENSG00000155463	50	0	0	42	10	19.23	-	-	-	T	23237317	C	T	23237317	4	4	712	1	0	0	0	0	0	1	0	0	11401	595	21	4	566	4	OXA1L	14	23237317	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1725795	23237317	84112223	463	62801										
NYNRIN	0	genome.wustl.edu	37	chr14	24878012	24878012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aactcctcttccaacctccaGtatcagccctgggtgtgtgc	8	15	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	24878012	24878012	G	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.1012	p.V338L	0.011	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	51	0	0	37	25	40.32	-	-	-	T	24878012	G	T	24878012	3	4	712	1	0	0	0	0	1	0	0	0	10869	1029	36	4	1022	4	NYNRIN	14	24878012	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1640695	24878012	82471528	464	62802										
PPP2R3C	0	genome.wustl.edu	37	chr14	35579138	35579138	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccagcaaaaaccataagttCttaagagaattgtggaagtg	9	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	35579138	35579138	C	G	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	splice_site	c.292-1	e4-1	1.000	-	-	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	70	0	0	61	27	30.68	-	-	-	G	35579138	C	G	35579138	5	3	712	1	0	0	0	0	0	0	1	0	12467	927	32	2	1110	2	PPP2R3C	14	35579138	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	10701126	35579138	71770402	465	62803										
SYT16	0	genome.wustl.edu	37	chr14	62567180	62567180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccgttgcaagacgtccattCggcgtggtcagcccaatcct	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	62567180	62567180	C	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	1	novel	missense	c.1693	p.R565W	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	113	0	0	98	26	20.97	-	-	-	T	62567180	C	T	62567180	3	4	712	1	0	0	0	0	1	0	0	0	15564	875	31	1	1715	1	SYT16	14	62567180	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	26988042	62567180	44782360	466	62804										
MPP5	0	genome.wustl.edu	37	chr14	67759250	67759250	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atagaagacttgttttcttcActtaaacatatccaacatac	3	9	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	67759250	67759250	A	G	SNP	MPP5	ENST00000261681	human	ensembl	69_37n	1	known	silent	c.390	p.S130	0.857	pfam_L27_N,smart_L27,pfscan_L27	pfam_Guanylate_kin,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP5	HGNC	ENSG00000072415	103	0	0	71	19	21.11	-	-	-	G	67759250	A	G	67759250	2	3	712	1	0	0	0	0	0	0	0	1	9809	146	6	5		5	MPP5	14	67759250	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5192070	67759250	39590290	467	62805										
PLEKHH1	0	genome.wustl.edu	37	chr14	68044077	68044077	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaagacggcctatacgcctcCctcaccaccctgccctctga	6	19	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	68044077	68044077	C	G	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	silent	c.2520	p.S840	0.986	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	55	0	0	50	8	13.79	-	-	-	G	68044077	C	G	68044077	2	3	712	1	0	0	0	0	0	0	0	1	12150	610	22	4		4	PLEKHH1	14	68044077	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	284827	68044077	39305463	468	62806										
PROX2	0	genome.wustl.edu	37	chr14	75330485	75330485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttccgtacaagcttctgctAggtgggagcagatctggggc	14	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	75330485	75330485	A	G	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.53	p.L18P	0.000	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	55	0	0	64	16	20	-	-	-	G	75330485	A	G	75330485	3	3	712	1	0	0	0	0	1	0	0	0	12642	420	15	5	1741	5	PROX2	14	75330485	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	7286408	75330485	32019055	469	62807										
FLRT2	0	genome.wustl.edu	37	chr14	86089277	86089277	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggagcgcatagtcagcggTgagaagcaacacctgagcct	13	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	86089277	86089277	T	C	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	silent	c.1419	p.G473	0.008	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	76	0	0	61	12	16.44	-	-	-	C	86089277	T	C	86089277	2	2	712	1	0	0	0	0	0	0	0	1	5985	1683	59	5		5	FLRT2	14	86089277	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	10758792	86089277	21260263	470	62808										
SMEK1	0	genome.wustl.edu	37	chr14	91942312	91942312	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgtgtatcatccatgcccTgcagacaaaaaacatttatt	5	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	91942312	91942312	T	G	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	splice_site	c.1111-2	e7-2	1.000	-	-	-	no_errors	SMEK1	HGNC	ENSG00000100796	108	0	0	106	15	12.4	-	-	-	G	91942312	T	G	91942312	5	3	712	1	0	0	0	0	0	0	1	0	14882	1594	55	5	1389	5	SMEK1	14	91942312	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5853035	91942312	15407228	471	62809										
LGMN	0	genome.wustl.edu	37	chr14	93199028	93199028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tataccagccatttgaacctGccacgatcaccacccagtgc	6	16	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	93199028	93199028	G	A	SNP	LGMN	ENST00000334869	human	ensembl	69_37n	-1	known	missense	c.104	p.A35V	0.997	pfam_Peptidase_C13,prints_Peptidase_C13	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600	99	1	1	100	13	11.5	-	-	-	A	93199028	G	A	93199028	3	1	712	1	0	0	0	0	1	0	0	0	8810	1319	46	4	1249	4	LGMN	14	93199028	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1256716	93199028	14150512	472	62810										
SERPINA5	0	genome.wustl.edu	37	chr14	95053878	95053878	+	Frame_Shift_Del	DEL	C	C	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagggccttggcttccgctgCccccagccagagcatcttct							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	95053878	95053878	C	-	DEL	SERPINA5	ENST00000329597	human	ensembl	69_37n	1	known	frame_shift_del	c.179	p.S62fs	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	41	0	0	23	7	21.88	-	-	-	-	95053878	C	-	95053878	7	5	712	1	0	1	0	1	0	0	0	0	14180	739	26	0	181	0	SERPINA5	14	95053878	Frame_Shift_Del	DEL	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1854850	95053878	12295662	473	62811										
CLMN	0	genome.wustl.edu	37	chr14	95677094	95677094	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagccttctctagattttctCgtgtggaattttccagggcc	9	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	95677094	95677094	C	T	SNP	CLMN	ENST00000298912	human	ensembl	69_37n	-1	known	missense	c.731	p.R244Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959	173	0	0	143	86	37.23	-	-	-	T	95677094	C	T	95677094	3	4	712	1	0	0	0	0	1	0	0	0	3572	884	31	1	2305	1	CLMN	14	95677094	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	623216	95677094	11672446	474	62812										
HHIPL1	0	genome.wustl.edu	37	chr14	100138717	100138717	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagatcagaagccgtctcatCccctttgtgcccaaagaaag	8	12	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	100138717	100138717	C	A	SNP	HHIPL1	ENST00000330710	human	ensembl	69_37n	1	known	silent	c.1794	p.I598	0.887	NULL	pfam_Srcr_rcpt,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	HHIPL1	HGNC	ENSG00000182218	67	0	0	67	13	16.25	-	-	-	A	100138717	C	A	100138717	2	1	712	1	0	0	0	0	0	0	0	1	7144	845	30	2		2	HHIPL1	14	100138717	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4461623	100138717	7210823	475	62813										
DYNC1H1	0	genome.wustl.edu	37	chr14	102442138	102442138	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atggggttaaatccaataggTgagtagtacaaatattacca	9	5	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	102442138	102442138	T	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	splice_site	c.344+2	e2+2	1.000	-	-	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	102	0	0	54	10	15.62	-	-	-	C	102442138	T	C	102442138	5	2	712	1	0	0	0	0	0	0	1	0	4876	1710	59	5	352	5	DYNC1H1	14	102442138	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2303421	102442138	4907402	476	62814										
CDC42BPB	0	genome.wustl.edu	37	chr14	103442062	103442062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttcgatttcttcatttagcTttttgatttctttatctcgg	6	7	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	103442062	103442062	T	C	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.1466	p.K489R	0.952	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	318	0	0	269	56	17.23	-	-	-	C	103442062	T	C	103442062	3	2	712	1	0	0	0	0	1	0	0	0	3102	1609	56	5	3777	5	CDC42BPB	14	103442062	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	999924	103442062	3907478	477	62815										
KLC1	0	genome.wustl.edu	37	chr14	104145728	104145728	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctggctcacagggtcttgAcaatgttcacaaacagaggg	12	10	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	104145728	104145728	A	G	SNP	KLC1	ENST00000334553	human	ensembl	69_37n	1	known	missense	c.1496	p.D499G	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	56	0	0	64	12	15.58	-	-	-	G	104145728	A	G	104145728	3	3	712	1	0	0	0	0	1	0	0	0	8386	275	10	5	1542	5	KLC1	14	104145728	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	703666	104145728	3203812	478	62816										
PACS2	0	genome.wustl.edu	37	chr14	105834431	105834431	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ataactactccgaggaggagTatgagagcttctcctccgag	11	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	14	105834431	105834431	T	C	SNP	PACS2	ENST00000458164	human	ensembl	69_37n	1	known	missense	c.607	p.Y203H	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364	38	0	0	39	8	17.02	-	-	-	C	105834431	T	C	105834431	3	2	712	1	0	0	0	0	1	0	0	0	11446	1638	57	5	629	5	PACS2	14	105834431	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1688703	105834431	1515109	479	62817										
OTUD7A	0	genome.wustl.edu	37	chr15	31779758	31779758	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttgtgctcagaatccgtcaGggggatcacggctggaacag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	31779758	31779758	G	-	DEL	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	frame_shift_del	c.1183	p.L395fs	0.999	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	61	0	0	44	13	22.41	-	-	-	-	31779758	G	-	31779758	7	5	712	1	0	1	0	1	0	0	0	0	11391	991	35	0	1630	0	OTUD7A	15	31779758	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09		31779758	70751634	480	62818										
RYR3	0	genome.wustl.edu	37	chr15	34102731	34102731	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caaagcggcggggagacttgTattccatccagacctccctc	10	14	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	34102731	34102731	T	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.10078	p.Y3360H	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	59	0	0	40	14	25.45	-	-	-	C	34102731	T	C	34102731	3	2	712	1	0	0	0	0	1	0	0	0	13856	1638	57	5	10360	5	RYR3	15	34102731	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2322973	34102731	68428661	481	62819										
SPRED1	0	genome.wustl.edu	37	chr15	38643500	38643500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cattaaaaattaagaagtcaAaacgaagaaaagaggatggt	9	3	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	38643500	38643500	A	G	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.970	p.K324E	1.000	NULL	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	83	0	0	44	15	25.42	-	-	-	G	38643500	A	G	38643500	3	3	712	1	0	0	0	0	1	0	0	0	15183	15	1	5	996	5	SPRED1	15	38643500	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	4540769	38643500	63887892	482	62820										
INO80	0	genome.wustl.edu	37	chr15	41384230	41384230	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcctgaaactcttacctcctTgtctttactatacttatttt	2	11	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	41384230	41384230	T	C	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.532	p.K178E	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	301	0	0	194	43	18.14	-	-	-	C	41384230	T	C	41384230	3	2	712	1	0	0	0	0	1	0	0	0	7800	1821	63	5	4266	5	INO80	15	41384230	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2740730	41384230	61147162	483	62821										
LCMT2	0	genome.wustl.edu	37	chr15	43621138	43621138	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcctgacccaagccattgtcCctacatggaggaaatgccag	9	13	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	43621138	43621138	C	A	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.1550	p.G517V	0.002	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	38	0	0	31	10	24.39	-	-	-	A	43621138	C	A	43621138	3	1	712	1	0	0	0	0	1	0	0	0	8733	623	22	4	514	4	LCMT2	15	43621138	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2236908	43621138	58910254	484	62822										
WDR76	0	genome.wustl.edu	37	chr15	44150962	44150962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acaaagagcattgcttccgcCtatttttcacctcttactgg	6	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	44150962	44150962	C	T	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	silent	c.1503	p.A501	0.947	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	184	0	0	131	17	11.49	-	-	-	T	44150962	C	T	44150962	2	4	712	1	0	0	0	0	0	0	0	1	17423	668	24	4		4	WDR76	15	44150962	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	529824	44150962	58380430	485	62823										
CEP152	0	genome.wustl.edu	37	chr15	49076204	49076206	+	In_Frame_Del	DEL	CTC	CTC	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgggcacactgcttttgactCtcctctagacttcttgtcaa							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	49076204	49076206	CTC	-	DEL	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	in_frame_del	c.1287_1285	p.E429in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	96	0	0	110	16	12.7	-	-	-	-	49076206	CTC	-	49076204	7	5	712	1	0	1	0	1	0	0	0	0	3277	912	32	0	3745	0	CEP152	15	49076204	In_Frame_Del	DEL	CTC	TCGA-D8-A1XQ-01A-11D-A14K-09	4925242	49076204	53455188	486	62824										
HERC1	0	genome.wustl.edu	37	chr15	64039169	64039169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagtctgaagagcaaatttCgaagtggacctgcctgcctc	10	11	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	64039169	64039169	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.2468	p.R823Q	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	74	0	0	97	14	12.61	-	-	-	T	64039169	C	T	64039169	3	4	712	1	0	0	0	0	1	0	0	0	7108	884	31	1	12385	1	HERC1	15	64039169	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	14962965	64039169	38492223	487	62825										
SCAMP2	0	genome.wustl.edu	37	chr15	75143800	75143800	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acagggcaccacgagggcagAgggggccagttgttctgtct	16	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	75143800	75143800	A	C	SNP	SCAMP2	ENST00000268099	human	ensembl	69_37n	-1	known	silent	c.366	p.P122	0.001	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497	65	0	0	55	14	20.29	-	-	-	C	75143800	A	C	75143800	2	2	712	1	0	0	0	0	0	0	0	1	13958	291	11	5		5	SCAMP2	15	75143800	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	11104631	75143800	27387592	488	62826										
C15orf39	0	genome.wustl.edu	37	chr15	75503351	75503351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccgcagtctgctggagaccgCctggctcaatggcctggctc	13	15	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	75503351	75503351	C	T	SNP	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	missense	c.3038	p.A1013V	0.990	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	23	0	0	23	6	20.69	-	-	-	T	75503351	C	T	75503351	3	4	712	1	0	0	0	0	1	0	0	0	1805	739	26	4	3044	4	C15orf39	15	75503351	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	359551	75503351	27028041	489	62827										
RASGRF1	0	genome.wustl.edu	37	chr15	79310205	79310205	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaatcctttggctccaccccGattttaaaatccaagtgatc	6	12	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	79310205	79310205	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.1650	p.I550	0.430	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	127	0	0	103	19	15.57	-	-	-	A	79310205	G	A	79310205	2	1	712	1	0	0	0	0	0	0	0	1	13155	1048	37	1		1	RASGRF1	15	79310205	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3806854	79310205	23221187	490	62828										
FAM154B	0	genome.wustl.edu	37	chr15	82574982	82574982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcttgactatgttccatatcAggccaaccatgttgttccca	6	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	82574982	82574982	A	G	SNP	FAM154B	ENST00000339465	human	ensembl	69_37n	1	known	missense	c.776	p.Q259R	0.000	NULL	NULL	-	no_errors	FAM154B	HGNC	ENSG00000188659	73	0	0	54	12	18.18	-	-	-	G	82574982	A	G	82574982	3	3	712	1	0	0	0	0	1	0	0	0	5504	188	7	5	786	5	FAM154B	15	82574982	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3264777	82574982	19956410	491	62829										
FURIN	0	genome.wustl.edu	37	chr15	91420405	91420406	+	Frame_Shift_Ins	INS	-	-	C													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcaatgaccaggaccctgaINScccccagcctcggtacacac							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	91420405	91420406	-	C	INS	FURIN	ENST00000268171	human	ensembl	69_37n	1	known	frame_shift_ins	c.542_543	p.Q183fs	1.000:1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	92	0	0	50	11	18.03	-	-	-	C	91420406	-	C	91420405	7	5	712	1	0	1	1	0	0	0	0	0	6148	275	10	0	560	0	FURIN	15	91420405	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	8845423	91420405	11110987	492	62830										
MAN2A2	0	genome.wustl.edu	37	chr15	91459377	91459377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctggaggtgatcttggaccGgcggctgatgcaggatgaca	17	8	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	15	91459377	91459377	G	T	SNP	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	missense	c.2885	p.R962L	1.000	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	52	0	0	19	34	62.96	-	-	-	T	91459377	G	T	91459377	3	4	712	1	0	0	0	0	1	0	0	0	9286	1116	39	3	2959	3	MAN2A2	15	91459377	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	38972	91459377	11072015	493	62831										
PIGQ	0	genome.wustl.edu	37	chr16	633151	633151	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttgtggacgctgctgtgtgcTcctgaacacggcaggccctg	14	12	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	633151	633151	T	G	SNP	PIGQ	ENST00000026218	human	ensembl	69_37n	1	known	silent	c.1800	p.A600	0.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	48	0	0	62	10	13.89	-	-	-	G	633151	T	G	633151	2	3	712	1	0	0	0	0	0	0	0	1	11970	1538	54	5		5	PIGQ	16	633151	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09		633151	89721602	494	62832										
WDR90	0	genome.wustl.edu	37	chr16	711733	711733	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagctcacctgtgtgggccaGggcactgtcaccttctggct	13	13	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	711733	711733	G	A	SNP	WDR90	ENST00000549091	human	ensembl	69_37n	1	novel	silent	c.3810	p.Q1270	0.068	superfamily_Quinonprotein_ADH-like,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	16	0	0	21	5	19.23	-	-	-	A	711733	G	A	711733	2	1	712	1	0	0	0	0	0	0	0	1	17434	991	35	4		4	WDR90	16	711733	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	78582	711733	89643020	495	62833										
IFT140	0	genome.wustl.edu	37	chr16	1621412	1621412	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggaaaaaaaatttaccttcGggaaagatcaaagcttttaa	7	5	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	1621412	1621412	G	T	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.1648	p.R550	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	65	0	0	27	25	48.08	-	-	-	T	1621412	G	T	1621412	2	4	712	1	0	0	0	0	0	0	0	1	7610	1124	39	3		3	IFT140	16	1621412	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	909679	1621412	88733341	496	62834										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1798618	1798618	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacagcccaacccagggcatCgtgaacaaagctttcggcat	9	13	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	1798618	1798618	C	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	silent	c.1110	p.I370	0.368	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	64	0	0	50	8	13.79	-	-	-	T	1798618	C	T	1798618	2	4	712	1	0	0	0	0	0	0	0	1	9357	874	31	1		1	MAPK8IP3	16	1798618	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	177206	1798618	88556135	497	62835										
TRAF7	0	genome.wustl.edu	37	chr16	2223334	2223334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accaggagatcgccttcctgCgctccatgctgggaaagctc	11	14	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	2223334	2223334	C	T	SNP	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	missense	c.946	p.R316C	1.000	superfamily_TRAF-like	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	54	0	0	36	6	13.95	-	-	-	T	2223334	C	T	2223334	3	4	712	1	0	0	0	0	1	0	0	0	16542	768	27	1	980	1	TRAF7	16	2223334	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	424716	2223334	88131419	498	62836										
TBC1D24	0	genome.wustl.edu	37	chr16	2546253	2546253	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcactgaactgcaggaacTgaagcagctggcgcgccagg	14	12	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	2546253	2546253	T	C	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	1	known	missense	c.104	p.L35P	1.000	NULL	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	30	0	0	10	6	37.5	-	-	-	C	2546253	T	C	2546253	3	2	712	1	0	0	0	0	1	0	0	0	15706	1580	55	5	106	5	TBC1D24	16	2546253	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	322919	2546253	87808500	499	62837										
CREBBP	0	genome.wustl.edu	37	chr16	3781302	3781302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctccaccagcatgcagagcGtggaccacttggagcggcgc	14	14	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	3781302	3781302	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.5063	p.T1688M	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	52	0	0	56	12	17.65	-	-	-	A	3781302	G	A	3781302	3	1	712	1	0	0	0	0	1	0	0	0	3891	1145	40	1	2273	1	CREBBP	16	3781302	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1235049	3781302	86573451	500	62838										
ADCY9	0	genome.wustl.edu	37	chr16	4016347	4016347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcccatggttgaagccgacgCggagcttgaagttgaaccac	13	11	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	4016347	4016347	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.3491	p.R1164H	0.996	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	54	0	0	38	5	11.63	-	-	-	T	4016347	C	T	4016347	3	4	712	1	0	0	0	0	1	0	0	0	301	768	27	1	574	1	ADCY9	16	4016347	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	235045	4016347	86338406	501	62839										
SRL	0	genome.wustl.edu	37	chr16	4242567	4242567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtggatgcggacccggatggCgtgctggcggatgaaggcaa	19	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	4242567	4242567	C	T	SNP	SRL	ENST00000399609	human	ensembl	69_37n	-1	known	missense	c.1009	p.A337T	1.000	NULL	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	-	no_errors	SRL	HGNC	ENSG00000185739	116	0	0	88	10	10.2	-	-	-	T	4242567	C	T	4242567	3	4	712	1	0	0	0	0	1	0	0	0	15241	768	27	1	416	1	SRL	16	4242567	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	226220	4242567	86112186	502	62840										
XYLT1	0	genome.wustl.edu	37	chr16	17232213	17232213	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaccatgagaaagtctcaccTggaagcggtggaagtcctgc	13	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	17232213	17232213	T	C	SNP	XYLT1	ENST00000261381	human	ensembl	69_37n	-1	known	missense	c.1763	p.Q588R	1.000	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	62	0	0	68	12	14.81	-	-	-	C	17232213	T	C	17232213	3	2	712	1	0	0	0	0	1	0	0	0	17560	1594	55	5	1136	5	XYLT1	16	17232213	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	12989646	17232213	73122540	503	62841										
C16orf62	0	genome.wustl.edu	37	chr16	19702748	19702748	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aacaagctgtgtgagacggtGatggctcagatcctagagca	13	8	1	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	19702748	19702748	G	A	SNP	C16orf62	ENST00000438132	human	ensembl	69_37n	1	known	silent	c.2868	p.V956	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	104	0	0	93	46	33.09	-	-	-	A	19702748	G	A	19702748	2	1	712	1	0	0	0	0	0	0	0	1	1838	1277	45	2		2	C16orf62	16	19702748	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2470535	19702748	70652005	504	62842										
ITGAX	0	genome.wustl.edu	37	chr16	31383824	31383824	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gatgctcagagatacttcacGgcctccgtgagtcctggcac	11	13	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	31383824	31383824	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.2286	p.T762	0.004	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	49	0	0	83	18	17.82	-	-	-	A	31383824	G	A	31383824	2	1	712	1	0	0	0	0	0	0	0	1	7943	1103	39	1		1	ITGAX	16	31383824	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	11681076	31383824	58970929	505	62843										
ITGAX	0	genome.wustl.edu	37	chr16	31388161	31388161	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcacctgacatgtgacagCgccccagttgggagccaggg	14	13	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	31388161	31388161	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	silent	c.2550	p.S850	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	40	0	0	44	8	15.38	-	-	-	T	31388161	C	T	31388161	2	4	712	1	0	0	0	0	0	0	0	1	7943	767	27	1		1	ITGAX	16	31388161	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4337	31388161	58966592	506	62844										
MMP2	0	genome.wustl.edu	37	chr16	55523666	55523666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accagcgccggccgcagtgaCggaaagatgtggtgtgcgac	16	11	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	55523666	55523666	C	T	SNP	MMP2	ENST00000219070	human	ensembl	69_37n	1	known	silent	c.1110	p.D370	0.858	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP2	HGNC	ENSG00000087245	43	0	0	33	11	25	-	-	-	T	55523666	C	T	55523666	2	4	712	1	0	0	0	0	0	0	0	1	9729	535	19	1		1	MMP2	16	55523666	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	24135505	55523666	34831087	507	62845										
CCDC135	0	genome.wustl.edu	37	chr16	57760118	57760118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acatcacggcctccaagcgcGagttcctgcggcgcaccgag	12	16	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	57760118	57760118	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1897	p.E633K	1.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	37	0	0	49	9	15.52	-	-	-	A	57760118	G	A	57760118	3	1	712	1	0	0	0	0	1	0	0	0	2794	1059	37	1	1943	1	CCDC135	16	57760118	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2236452	57760118	32594635	508	62846										
CNOT1	0	genome.wustl.edu	37	chr16	58577341	58577341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaaaaaaacacacagacatgAtgctttgcctcacagaatta	5	9	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	58577341	58577341	A	G	SNP	CNOT1	ENST00000441024	human	ensembl	69_37n	-1	known	missense	c.4604	p.I1535T	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	43	0	0	25	5	16.67	-	-	-	G	58577341	A	G	58577341	3	3	712	1	0	0	0	0	1	0	0	0	3647	333	12	5	2824	5	CNOT1	16	58577341	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	817223	58577341	31777412	509	62847										
CNOT1	0	genome.wustl.edu	37	chr16	58589155	58589155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggaaacctatccacttacCtgtttttaaatctatctagt	4	10	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	58589155	58589155	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	missense	c.2891	p.R964K	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	42	0	0	22	9	29.03	-	-	-	T	58589155	C	T	58589155	3	4	712	1	0	0	0	0	1	0	0	0	3647	695	24	4	4577	4	CNOT1	16	58589155	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	11814	58589155	31765598	510	62848										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67859647	67859647	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acctgacccgcacgcagatgGaactcaacaacatgaaggcc	9	14	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	67859647	67859647	G	C	SNP	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	1	known	missense	c.730	p.E244Q	1.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	57	0	0	37	12	24.49	-	-	-	C	67859647	G	C	67859647	3	2	712	1	0	0	0	0	1	0	0	0	16728	1175	41	2	752	2	TSNAXIP1	16	67859647	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	9270492	67859647	22495106	511	62849										
CDH3	0	genome.wustl.edu	37	chr16	68716273	68716273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgacggtcactgatctggaCgcccccaactcaccagcgtg	10	16	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	68716273	68716273	C	T	SNP	CDH3	ENST00000264012	human	ensembl	69_37n	1	known	silent	c.1065	p.D355	0.019	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	47	0	0	41	17	29.31	-	-	-	T	68716273	C	T	68716273	2	4	712	1	0	0	0	0	0	0	0	1	3140	535	19	1		1	CDH3	16	68716273	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	856626	68716273	21638480	512	62850										
SF3B3	0	genome.wustl.edu	37	chr16	70589014	70589014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagtcaatgagtggaagaccCctggaaagaaaacaattgtg	12	6	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	70589014	70589014	C	T	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	missense	c.1615	p.P539S	1.000	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	190	0	0	88	67	42.95	-	-	-	T	70589014	C	T	70589014	3	4	712	1	0	0	0	0	1	0	0	0	14240	623	22	4	1661	4	SF3B3	16	70589014	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1872741	70589014	19765739	513	62851										
PKD1L2	0	genome.wustl.edu	37	chr16	81187729	81187729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctctctccatccaggccatAcagggtgacagtcacctgaa	8	14	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	16	81187729	81187729	A	G	SNP	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	missense	c.4243	p.Y1415H	0.846	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	169	1	0.59	127	37	22.42	-	-	-	G	81187729	A	G	81187729	3	3	712	1	0	0	0	0	1	0	0	0	12039	391	14	5	3207	5	PKD1L2	16	81187729	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10598715	81187729	9167024	514	62852										
ABR	0	genome.wustl.edu	37	chr17	1028679	1028679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctcattcccctctccgtcgtActcgtccgtcccgtagctga	7	18	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	1028679	1028679	A	G	SNP	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	missense	c.85	p.Y29H	1.000	NULL	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	44	0	0	31	5	13.89	-	-	-	G	1028679	A	G	1028679	3	3	712	1	0	0	0	0	1	0	0	0	99	391	14	5	2721	5	ABR	17	1028679	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09		1028679	80166531	515	62853										
OR1D2	0	genome.wustl.edu	37	chr17	2995389	2995389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtgtttatctaggagtcttCccagagccccatgcatgtcc	9	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	2995389	2995389	C	T	SNP	OR1D2	ENST00000331459	human	ensembl	69_37n	-1	known	missense	c.902	p.G301E	0.021	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1D2	HGNC	ENSG00000184166	159	0	0	152	41	21.24	-	-	-	T	2995389	C	T	2995389	3	4	712	1	0	0	0	0	1	0	0	0	11026	855	30	2	39	2	OR1D2	17	2995389	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1966710	2995389	78199821	516	62854										
OR1A2	0	genome.wustl.edu	37	chr17	3100901	3100901	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaataatgtcttctttgtgaTttttttgtgcatttacccca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	3100901	3100901	T	-	DEL	OR1A2	ENST00000381951	human	ensembl	69_37n	1	known	frame_shift_del	c.89	p.L32fs	0.926	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150	180	0	0	177	42	18.92	-	-	-	-	3100901	T	-	3100901	7	5	712	1	0	1	0	1	0	0	0	0	11023	1493	52	0	91	0	OR1A2	17	3100901	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	105512	3100901	78094309	517	62855										
NLRP1	0	genome.wustl.edu	37	chr17	5463177	5463177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtctttgtagaagtagcagcTgtgtgaatttttggttaaaa	11	3	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	5463177	5463177	T	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.839	p.Q280L	0.376	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	265	0	0	129	50	27.93	-	-	-	A	5463177	T	A	5463177	3	1	712	1	0	0	0	0	1	0	0	0	10543	1580	55	5	3713	5	NLRP1	17	5463177	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2362276	5463177	75732033	518	62856										
ZBTB4	0	genome.wustl.edu	37	chr17	7369111	7369111	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcacaatagcggcaggggTacttcctccgccacgagtgt	11	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	7369111	7369111	T	A	SNP	ZBTB4	ENST00000311403	human	ensembl	69_37n	-1	known	missense	c.1010	p.Y337F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282	12	0	0	8	6	31.58	-	-	-	A	7369111	T	A	7369111	3	1	712	1	0	0	0	0	1	0	0	0	17637	1638	57	5	2039	5	ZBTB4	17	7369111	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1905934	7369111	73826099	519	62857										
EIF4A1	0	genome.wustl.edu	37	chr17	7480800	7480800	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agttctacatcaacgtggaaCgagaggtggggcccagtgca	14	9	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	7480800	7480800	C	T	SNP	EIF4A1	ENST00000293831	human	ensembl	69_37n	1	known	nonsense	c.763	p.R255*	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A1	HGNC	ENSG00000161960	63	0	0	67	11	14.1	-	-	-	T	7480800	C	T	7480800	4	4	712	1	0	0	0	0	0	1	0	0	5061	528	19	1	789	1	EIF4A1	17	7480800	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	111689	7480800	73714410	520	62858										
TP53	0	genome.wustl.edu	37	chr17	7577527	7577527	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttccagtgtgatgatggtgaGgatgggcctccggttcatgc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	7577527	7577527	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.754	p.L252fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	68	0	0	31	52	60.47	-	-	-	-	7577527	G	-	7577527	7	5	712	1	0	1	0	1	0	0	0	0	16477	1000	35	0	536	0	TP53	17	7577527	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09	96727	7577527	73617683	521	62859										
DNAH2	0	genome.wustl.edu	37	chr17	7734141	7734141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	attatttctgtgaccagtctCtatcaactcccttccaccgg	5	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	7734141	7734141	C	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.12211	p.L4071V	0.013	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	74	0	0	60	10	14.29	-	-	-	G	7734141	C	G	7734141	3	3	712	1	0	0	0	0	1	0	0	0	4638	912	32	2	12521	2	DNAH2	17	7734141	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	156614	7734141	73461069	522	62860										
AURKB	0	genome.wustl.edu	37	chr17	8108653	8108653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caccttctcattgtgcatgcGcccctcaatcatctctgggg	8	15	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	8108653	8108653	G	A	SNP	AURKB	ENST00000585124	human	ensembl	69_37n	-1	known	missense	c.742	p.R248C	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKB	HGNC	ENSG00000178999	134	0	0	99	17	14.66	-	-	-	A	8108653	G	A	8108653	3	1	712	1	0	0	0	0	1	0	0	0	1227	1087	38	1	300	1	AURKB	17	8108653	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	374512	8108653	73086557	523	62861										
MYH10	0	genome.wustl.edu	37	chr17	8422030	8422030	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aatctctttcttcctctaagTgtgccagaactccagctctg	6	13	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	8422030	8422030	T	C	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.2393	p.H798R	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	104	0	0	69	33	32.35	-	-	-	C	8422030	T	C	8422030	3	2	712	1	0	0	0	0	1	0	0	0	10102	1696	59	5	3692	5	MYH10	17	8422030	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	313377	8422030	72773180	524	62862										
MYH4	0	genome.wustl.edu	37	chr17	10351825	10351825	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcaatttgctctgtcaggTcagaaatctcctctgtaata	7	10	5	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	10351825	10351825	T	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.4544	p.D1515V	1.000	pfam_Myosin_tail,superfamily_tRNA-bd_arm	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	167	0	0	69	101	59.41	-	-	-	A	10351825	T	A	10351825	3	1	712	1	0	0	0	0	1	0	0	0	10109	1667	58	5	1307	5	MYH4	17	10351825	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1929795	10351825	70843385	525	62863										
MYH3	0	genome.wustl.edu	37	chr17	10543402	10543402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctttttgcctccgacttggCgagttcatctttggttttct	8	11	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	10543402	10543402	C	T	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	missense	c.2593	p.A865T	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	387	0	0	263	45	14.61	-	-	-	T	10543402	C	T	10543402	3	4	712	1	0	0	0	0	1	0	0	0	10108	768	27	1	3309	1	MYH3	17	10543402	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	191577	10543402	70651808	526	62864										
SMCR8	0	genome.wustl.edu	37	chr17	18220114	18220114	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttcacccagaccctggctcaGctcagccacattgaacacat	6	16	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	18220114	18220114	G	A	SNP	SMCR8	ENST00000406438	human	ensembl	69_37n	1	known	silent	c.1011	p.Q337	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994	91	0	0	59	17	22.37	-	-	-	A	18220114	G	A	18220114	2	1	712	1	0	0	0	0	0	0	0	1	14881	962	34	4		4	SMCR8	17	18220114	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	7676712	18220114	62975096	527	62865										
SLC6A4	0	genome.wustl.edu	37	chr17	28539803	28539803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atcttcattcctcatctcagCcatgtaaccgagcactgtga	6	13	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	28539803	28539803	C	T	SNP	SLC6A4	ENST00000261707	human	ensembl	69_37n	-1	known	missense	c.1159	p.A387T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	100	0	0	62	47	43.12	-	-	-	T	28539803	C	T	28539803	3	4	712	1	0	0	0	0	1	0	0	0	14775	739	26	4	761	4	SLC6A4	17	28539803	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	10319689	28539803	52655407	528	62866										
CPD	0	genome.wustl.edu	37	chr17	28754560	28754560	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcctatccatttgtactttcAgcaaacctgcatggaggtat	7	10	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	28754560	28754560	A	G	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	silent	c.2001	p.S667	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	74	0	0	69	15	17.86	-	-	-	G	28754560	A	G	28754560	2	3	712	1	0	0	0	0	0	0	0	1	3828	175	7	5		5	CPD	17	28754560	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	214757	28754560	52440650	529	62867										
IKZF3	0	genome.wustl.edu	37	chr17	37988374	37988374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cgggcacagactgctcctgaGtgcttttcagttccgcattt	10	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	37988374	37988374	G	A	SNP	IKZF3	ENST00000346872	human	ensembl	69_37n	-1	known	missense	c.38	p.T13I	0.961	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405	180	0	0	102	29	22.14	-	-	-	A	37988374	G	A	37988374	3	1	712	1	0	0	0	0	1	0	0	0	7670	1029	36	4	1519	4	IKZF3	17	37988374	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	9233814	37988374	43206836	530	62868										
GSDMA	0	genome.wustl.edu	37	chr17	38122539	38122539	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagacactgggaattttggcTttaagaatatgctggacacc	10	8	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	38122539	38122539	T	C	SNP	GSDMA	ENST00000301659	human	ensembl	69_37n	1	known	missense	c.241	p.F81L	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914	68	0	0	68	15	18.07	-	-	-	C	38122539	T	C	38122539	3	2	712	1	0	0	0	0	1	0	0	0	6867	1609	56	5	247	5	GSDMA	17	38122539	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	134165	38122539	43072671	531	62869										
STAT5A	0	genome.wustl.edu	37	chr17	40458442	40458442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggactacagtggcctgtccGtgtcctggtcccagttcaac	11	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	40458442	40458442	G	A	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	missense	c.1657	p.V553M	0.987	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	73	0	0	73	25	25	-	-	-	A	40458442	G	A	40458442	3	1	712	1	0	0	0	0	1	0	0	0	15359	1145	40	1	1703	1	STAT5A	17	40458442	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2335903	40458442	40736768	532	62870										
AOC2	0	genome.wustl.edu	37	chr17	40997704	40997704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gttccagggtgagcgaatagCctatgaagtcagtgtccagg	14	8	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	40997704	40997704	C	A	SNP	AOC2	ENST00000253799	human	ensembl	69_37n	1	known	missense	c.1061	p.A354D	0.689	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	131	0	0	83	46	35.66	-	-	-	A	40997704	C	A	40997704	3	1	712	1	0	0	0	0	1	0	0	0	728	739	26	4	1063	4	AOC2	17	40997704	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	539262	40997704	40197506	533	62871										
VAT1	0	genome.wustl.edu	37	chr17	41168369	41168369	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atgtggggcttgatgtggccCtggttgtacagagccaggag	17	7	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	41168369	41168369	C	T	SNP	VAT1	ENST00000355653	human	ensembl	69_37n	-1	known	silent	c.1053	p.Q351	1.000	smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1	HGNC	ENSG00000108828	41	0	0	26	21	44.68	-	-	-	T	41168369	C	T	41168369	2	4	712	1	0	0	0	0	0	0	0	1	17226	680	24	4		4	VAT1	17	41168369	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	170665	41168369	40026841	534	62872										
GRN	0	genome.wustl.edu	37	chr17	42429495	42429495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggactggagaagatgcctgCccgccgggcttccttatccc	12	14	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	42429495	42429495	C	T	SNP	GRN	ENST00000053867	human	ensembl	69_37n	1	known	missense	c.1292	p.A431V	0.986	NULL	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582	34	0	0	20	7	25.93	-	-	-	T	42429495	C	T	42429495	3	4	712	1	0	0	0	0	1	0	0	0	6855	739	26	4	1330	4	GRN	17	42429495	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1261126	42429495	38765715	535	62873										
HOXB13	0	genome.wustl.edu	37	chr17	46805391	46805391	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaaaagggacctggtgggtTctgttctccctggcaacaca	11	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	46805391	46805391	T	C	SNP	HOXB13	ENST00000290295	human	ensembl	69_37n	-1	known	missense	c.565	p.N189D	1.000	NULL	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXB13	HGNC	ENSG00000159184	66	0	0	49	8	14.04	-	-	-	C	46805391	T	C	46805391	3	2	712	1	0	0	0	0	1	0	0	0	7351	1783	62	5	297	5	HOXB13	17	46805391	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	4375896	46805391	34389819	536	62874										
CA10	0	genome.wustl.edu	37	chr17	49710906	49710906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	taaactgaagttgatattggTgcggatgcagcggttgttga	14	4	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	49710906	49710906	T	C	SNP	CA10	ENST00000340813	human	ensembl	69_37n	-1	known	missense	c.913	p.T305A	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975	157	0	0	171	27	13.64	-	-	-	C	49710906	T	C	49710906	3	2	712	1	0	0	0	0	1	0	0	0	2536	1696	59	5	99	5	CA10	17	49710906	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2905515	49710906	31484304	537	62875										
ANKFN1	0	genome.wustl.edu	37	chr17	54526454	54526454	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caatagactggaaagactatGacgacagagagcccagacac	10	10	0	5			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	54526454	54526454	G	A	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.1123	p.D375N	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	116	0	0	91	65	41.67	-	-	-	A	54526454	G	A	54526454	3	1	712	1	0	0	0	0	1	0	0	0	625	1290	45	2	1161	2	ANKFN1	17	54526454	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4815548	54526454	26668756	538	62876										
MPO	0	genome.wustl.edu	37	chr17	56353032	56353032	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagagggtgtgcatggaggtGagctcgggcatctcactgga	17	7	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	56353032	56353032	G	A	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	silent	c.1332	p.L444	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	85	0	0	145	25	14.53	-	-	-	A	56353032	G	A	56353032	2	1	712	1	0	0	0	0	0	0	0	1	9804	1277	45	2		2	MPO	17	56353032	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1826578	56353032	24842178	539	62877										
RNF43	0	genome.wustl.edu	37	chr17	56492758	56492758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	accttccaaagtgagattcaGttttcctgtggggtccattt	9	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	56492758	56492758	G	T	SNP	RNF43	ENST00000407977	human	ensembl	69_37n	-1	known	missense	c.181	p.L61M	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	133	0	0	175	85	32.69	-	-	-	T	56492758	G	T	56492758	3	4	712	1	0	0	0	0	1	0	0	0	13581	1020	36	4	2206	4	RNF43	17	56492758	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	139726	56492758	24702452	540	62878										
HSF5	0	genome.wustl.edu	37	chr17	56540485	56540485	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgtaagacggagatgttggGcactgattctcaacaggctc	12	9	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	56540485	56540485	G	T	SNP	HSF5	ENST00000323777	human	ensembl	69_37n	-1	known	nonsense	c.1200	p.C400*	0.997	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160	73	0	0	138	40	22.47	-	-	-	T	56540485	G	T	56540485	4	4	712	1	0	0	0	0	0	1	0	0	7450	1195	42	4	602	4	HSF5	17	56540485	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	47727	56540485	24654725	541	62879										
KCNH6	0	genome.wustl.edu	37	chr17	61615558	61615558	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaccagatccccaacccacTgcgccagcgcctggaggagt	10	18	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	61615558	61615558	T	C	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.1634	p.L545P	1.000	superfamily_cNMP-bd-like,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	62	0	0	106	15	12.4	-	-	-	C	61615558	T	C	61615558	3	2	712	1	0	0	0	0	1	0	0	0	8090	1580	55	5	1660	5	KCNH6	17	61615558	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5075073	61615558	19579652	542	62880										
TACO1	0	genome.wustl.edu	37	chr17	61685293	61685293	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctgagcccgacctggaacaGgccgcacatctcattcaggc	11	15	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	61685293	61685293	G	C	SNP	TACO1	ENST00000258975	human	ensembl	69_37n	1	known	missense	c.825	p.Q275H	0.994	pfam_Transcrip_reg_TACO1-like,superfamily_Transcrip_reg_TACO1-like	pfam_Transcrip_reg_TACO1-like,superfamily_Transcrip_reg_TACO1-like	-	no_errors	TACO1	HGNC	ENSG00000136463	108	0	0	91	76	45.24	-	-	-	C	61685293	G	C	61685293	3	2	712	1	0	0	0	0	1	0	0	0	15596	991	35	4	843	4	TACO1	17	61685293	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	69735	61685293	19509917	543	62881										
LRRC37A3	0	genome.wustl.edu	37	chr17	62855849	62855849	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggttagctgaatttcaaacTgatcacctggggacgagagc	13	8	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	62855849	62855849	T	A	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.4415	p.Q1472L	0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	277	0	0	458	62	11.92	-	-	-	A	62855849	T	A	62855849	3	1	712	1	0	0	0	0	1	0	0	0	9059	1580	55	5	505	5	LRRC37A3	17	62855849	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1170556	62855849	18339361	544	62882										
NUP85	0	genome.wustl.edu	37	chr17	73230808	73230810	+	In_Frame_Del	DEL	GAC	GAC	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctctccttctgtccttgatGacgtctcggattgcccctcg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	73230808	73230810	GAC	-	DEL	NUP85	ENST00000245544	human	ensembl	69_37n	1	known	in_frame_del	c.1692_1694	p.T565in_frame_del	1.000:1.000:0.999	pfam_Nucleoporin_Nup85	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450	115	0	0	71	38	34.86	-	-	-	-	73230810	GAC	-	73230808	7	5	712	1	0	1	0	1	0	0	0	0	10843	1290	45	0	1758	0	NUP85	17	73230808	In_Frame_Del	DEL	GAC	TCGA-D8-A1XQ-01A-11D-A14K-09	10374959	73230808	7964402	545	62883										
CASKIN2	0	genome.wustl.edu	37	chr17	73500659	73500659	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccccatcatcctacctgggcGttctcaatcaggaggccagg	10	15	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	73500659	73500659	G	A	SNP	CASKIN2	ENST00000321617	human	ensembl	69_37n	-1	known	silent	c.1308	p.N436	0.008	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain	-	no_errors	CASKIN2	HGNC	ENSG00000177303	28	0	0	29	6	17.14	-	-	-	A	73500659	G	A	73500659	2	1	712	1	0	0	0	0	0	0	0	1	2692	1136	40	1		1	CASKIN2	17	73500659	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	269851	73500659	7694551	546	62884										
AFMID	0	genome.wustl.edu	37	chr17	76203068	76203068	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcatcccaccttgggaagcCtctccaaagagctttcggag	10	13	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	76203068	76203068	C	G	SNP	AFMID	ENST00000591952	human	ensembl	69_37n	1	novel	silent	c.231	p.A77	0.000	NULL	NULL	-	no_errors	AFMID	HGNC	ENSG00000183077	132	0	0	83	76	47.8	-	-	-	G	76203068	C	G	76203068	2	3	712	1	0	0	0	0	0	0	0	1	362	696	24	4		4	AFMID	17	76203068	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2702409	76203068	4992142	547	62885										
DNAH17	0	genome.wustl.edu	37	chr17	76435299	76435299	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggtaaaccctagtttttttCctaaagaaaagaaaaacagg	7	6	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	76435299	76435299	C	A	SNP	DNAH17	ENST00000591369	human	ensembl	69_37n	-1	known	nonsense	c.3280	p.E1094*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,superfamily_HR1_rho-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH17	HGNC	ENSG00000187775	53	0	0	19	16	45.71	-	-	-	A	76435299	C	A	76435299	4	1	712	1	0	0	0	0	0	1	0	0	4637	869	30	2	1746	2	DNAH17	17	76435299	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	232231	76435299	4759911	548	62886										
CBX8	0	genome.wustl.edu	37	chr17	77770082	77770082	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcgagcaagcgagcatccAggatgttttcctccggttcc	11	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	77770082	77770082	A	G	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.146	p.L49P	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	101	0	0	118	19	13.87	-	-	-	G	77770082	A	G	77770082	3	3	712	1	0	0	0	0	1	0	0	0	2749	175	7	5	1010	5	CBX8	17	77770082	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1334783	77770082	3425128	549	62887										
CBX4	0	genome.wustl.edu	37	chr17	77808811	77808811	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcaccggccaggggcttcacCgcccccaggtagcctttggc	13	17	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	77808811	77808811	C	T	SNP	CBX4	ENST00000269397	human	ensembl	69_37n	-1	known	silent	c.630	p.A210	0.118	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582	42	0	0	51	11	17.74	-	-	-	T	77808811	C	T	77808811	2	4	712	1	0	0	0	0	0	0	0	1	2745	639	23	1		1	CBX4	17	77808811	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	38729	77808811	3386399	550	62888										
AATK	0	genome.wustl.edu	37	chr17	79108182	79108182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctcaccttgaacccgatacCgcccttcttacagcacaggc	6	18	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	79108182	79108182	C	T	SNP	AATK	ENST00000326724	human	ensembl	69_37n	-1	known	missense	c.175	p.G59S	0.079	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409	17	0	0	17	11	39.29	-	-	-	T	79108182	C	T	79108182	3	4	712	1	0	0	0	0	1	0	0	0	26	652	23	1	4001	1	AATK	17	79108182	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1299371	79108182	2087028	551	62889										
AZI1	0	genome.wustl.edu	37	chr17	79168750	79168750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctttctcggtggcgctcattAattctttgagttttttaatc	7	8	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	17	79168750	79168750	A	G	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	missense	c.2048	p.L683S	0.107	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	123	0	0	130	23	14.84	-	-	-	G	79168750	A	G	79168750	3	3	712	1	0	0	0	0	1	0	0	0	1244	372	13	5	1243	5	AZI1	17	79168750	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	60568	79168750	2026460	552	62890										
ENOSF1	0	genome.wustl.edu	37	chr18	685992	685992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcatcctggagatcagcacCcacctttactttaaacctag	6	13	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	685992	685992	C	A	SNP	ENOSF1	ENST00000340116	human	ensembl	69_37n	-1	known	missense	c.733	p.G245C	0.999	pfam_Mandelate_racemase_C,smart_Mandelate_racemase_C	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199	142	1	0.7	122	21	14.69	-	-	-	A	685992	C	A	685992	3	1	712	1	0	0	0	0	1	0	0	0	5162	623	22	4	689	4	ENOSF1	18	685992	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09		685992	77391256	553	62891										
EPB41L3	0	genome.wustl.edu	37	chr18	5443847	5443847	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagaacttacttcgaacctgTttttttatttccttagcagg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	5443847	5443847	T	-	DEL	EPB41L3	ENST00000341928	human	ensembl	69_37n	-1	known	frame_shift_del	c.519	p.K173fs	0.999	pirsf_Band_41_protein,pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L3	HGNC	ENSG00000082397	138	0	0	159	18	10.11	-	-	-	-	5443847	T	-	5443847	7	5	712	1	0	1	0	1	0	0	0	0	5191	1722	60	0	2816	0	EPB41L3	18	5443847	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	4757855	5443847	72633401	554	62892										
TWSG1	0	genome.wustl.edu	37	chr18	9360001	9360001	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgccggccgggagaaggcaAttgctcctgctgtaaggagt	16	9	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	9360001	9360001	A	T	SNP	TWSG1	ENST00000262120	human	ensembl	69_37n	1	known	missense	c.155	p.N52I	1.000	NULL	pfam_Tsg	-	no_errors	TWSG1	HGNC	ENSG00000128791	146	1	0.68	138	39	22.03	-	-	-	T	9360001	A	T	9360001	3	4	712	1	0	0	0	0	1	0	0	0	16882	101	4	5	161	5	TWSG1	18	9360001	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3916154	9360001	68717247	555	62893										
APCDD1	0	genome.wustl.edu	37	chr18	10468572	10468572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagtcacagtgccatcacatGctcaaacatctccacaatgg	7	13	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	10468572	10468572	G	T	SNP	APCDD1	ENST00000355285	human	ensembl	69_37n	1	known	missense	c.165	p.M55I	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	101	0	0	83	12	12.63	-	-	-	T	10468572	G	T	10468572	3	4	712	1	0	0	0	0	1	0	0	0	766	1319	46	4	171	4	APCDD1	18	10468572	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1108571	10468572	67608676	556	62894										
MPPE1	0	genome.wustl.edu	37	chr18	11886609	11886609	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttagcatcacttctccgataCagaggataatgctgtccggg	10	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	11886609	11886609	C	T	SNP	MPPE1	ENST00000588072	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	0.562	NULL	pfam_Metallo_PEstase_dom	-	no_errors	MPPE1	HGNC	ENSG00000154889	69	0	0	55	13	19.12	-	-	-	T	11886609	C	T	11886609	2	4	712	1	0	0	0	0	0	0	0	1	9812	465	17	4		4	MPPE1	18	11886609	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1418037	11886609	66190639	557	62895										
IMPA2	0	genome.wustl.edu	37	chr18	12030415	12030415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	atggcgatgctcatagctcaGgccttacagacgattaacta	9	10	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	12030415	12030415	G	T	SNP	IMPA2	ENST00000269159	human	ensembl	69_37n	1	known	missense	c.825	p.Q275H	1.000	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401	59	0	0	56	26	31.71	-	-	-	T	12030415	G	T	12030415	3	4	712	1	0	0	0	0	1	0	0	0	7777	991	35	4	855	4	IMPA2	18	12030415	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	143806	12030415	66046833	558	62896										
CEP192	0	genome.wustl.edu	37	chr18	13049352	13049352	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaaaatggagagagtgagaaTcaagagtcatttagaaccat	11	4	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	13049352	13049352	T	A	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.2562	p.N854K	0.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	76	0	0	22	40	64.52	-	-	-	A	13049352	T	A	13049352	3	1	712	1	0	0	0	0	1	0	0	0	3280	1432	50	5	2620	5	CEP192	18	13049352	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1018937	13049352	65027896	559	62897										
LAMA3	0	genome.wustl.edu	37	chr18	21422391	21422391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgagaggacgtgtaccacaCctgggccgatacgtctttgt	12	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	21422391	21422391	C	A	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.3369	p.H1123Q	0.005	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	58	0	0	74	23	23.71	-	-	-	A	21422391	C	A	21422391	3	1	712	1	0	0	0	0	1	0	0	0	8661	506	18	4	3479	4	LAMA3	18	21422391	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	8373039	21422391	56654857	560	62898										
C18orf21	0	genome.wustl.edu	37	chr18	33554980	33554980	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaaatacagaaacttcttaaTcgagaagcgagaaactatac	6	7	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	33554980	33554980	T	C	SNP	C18orf21	ENST00000592875	human	ensembl	69_37n	1	known	silent	c.222	p.N74	1.000	NULL	NULL	-	no_errors	C18orf21	HGNC	ENSG00000141428	106	0	0	68	49	41.88	-	-	-	C	33554980	T	C	33554980	2	2	712	1	0	0	0	0	0	0	0	1	1914	1432	50	5		5	C18orf21	18	33554980	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	12132589	33554980	44522268	561	62899										
FHOD3	0	genome.wustl.edu	37	chr18	34320688	34320688	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagctcagctggccaaccctGaaatccccctgggcagtgca	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	34320688	34320688	G	T	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	nonsense	c.3121	p.E1041*	0.998	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	85	0	0	75	30	28.57	-	-	-	T	34320688	G	T	34320688	4	4	712	1	0	0	0	0	0	1	0	0	5929	1291	45	2	3191	2	FHOD3	18	34320688	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	765708	34320688	43756560	562	62900										
MYO5B	0	genome.wustl.edu	37	chr18	47404165	47404165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagggcatcctcagtgtctcCgatctcagatgtggagatgg	14	9	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	47404165	47404165	C	T	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.3364	p.G1122R	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	300	0	0	166	101	37.83	-	-	-	T	47404165	C	T	47404165	3	4	712	1	0	0	0	0	1	0	0	0	10151	661	23	1	2246	1	MYO5B	18	47404165	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	13083477	47404165	30673083	563	62901										
SALL3	0	genome.wustl.edu	37	chr18	76753358	76753358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgcaacatctgcgggaaccGcttctccaccaaaggcaacc	9	15	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	18	76753358	76753358	G	A	SNP	SALL3	ENST00000537592	human	ensembl	69_37n	1	known	missense	c.1367	p.R456H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463	16	0	0	11	14	56	-	-	-	A	76753358	G	A	76753358	3	1	712	1	0	0	0	0	1	0	0	0	13898	1087	38	1	1373	1	SALL3	18	76753358	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	29349193	76753358	1323890	564	62902										
ABCA7	0	genome.wustl.edu	37	chr19	1058728	1058728	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cacactactgctgcagcaccGaagccaactcctgccacagt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	1058728	1058728	G	-	DEL	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	frame_shift_del	c.5261	p.R1754fs	0.936	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	80	0	0	70	15	17.44	-	-	-	-	1058728	G	-	1058728	7	5	712	1	0	1	0	1	0	0	0	0	37	1058	37	0	5407	0	ABCA7	19	1058728	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09		1058728	58070255	565	62903										
GNA11	0	genome.wustl.edu	37	chr19	3113468	3113468	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggcgcgagtaccagctctcCgactctgccaagtagtaagt	11	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	3113468	3113468	C	A	SNP	GNA11	ENST00000587636	human	ensembl	69_37n	1	putative	missense	c.8	p.P3Q	0.317	pfam_Gprotein_alpha_su,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNA11	HGNC	ENSG00000088256	23	0	0	21	7	25	-	-	-	A	3113468	C	A	3113468	3	1	712	1	0	0	0	0	1	0	0	0	6551	639	23	3	472	3	GNA11	19	3113468	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2054740	3113468	56015515	566	62904										
PIAS4	0	genome.wustl.edu	37	chr19	4033537	4033537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccacctggatgtgccccgtGtgcgacaagccagcccccta	10	18	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	4033537	4033537	G	A	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	1	known	silent	c.1101	p.V367	1.000	pfam_Znf_MIZ,pfscan_Znf_MIZ	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	20	0	0	10	6	37.5	-	-	-	A	4033537	G	A	4033537	2	1	712	1	0	0	0	0	0	0	0	1	11952	1364	48	4		4	PIAS4	19	4033537	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	920069	4033537	55095446	567	62905										
ZNF560	0	genome.wustl.edu	37	chr19	9577932	9577932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtttctctccagcgtgtgttCgtaaatgtttggtaagatat	10	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	9577932	9577932	C	T	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.1691	p.R564Q	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	100	0	0	63	25	28.41	-	-	-	T	9577932	C	T	9577932	3	4	712	1	0	0	0	0	1	0	0	0	18087	884	31	1	685	1	ZNF560	19	9577932	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	5544395	9577932	49551051	568	62906										
ZNF846	0	genome.wustl.edu	37	chr19	9868615	9868615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcatgtgtaaaacaagtcCtgaggaacgagtaaaagctt	9	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	9868615	9868615	C	G	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.1138	p.G380R	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	76	0	0	63	20	24.1	-	-	-	G	9868615	C	G	9868615	3	3	712	1	0	0	0	0	1	0	0	0	18285	690	24	4	467	4	ZNF846	19	9868615	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	290683	9868615	49260368	569	62907										
DNAJB1	0	genome.wustl.edu	37	chr19	14627523	14627525	+	In_Frame_Del	DEL	TCT	TCT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccgcttgtgggagattttcaTcttcttggtacagccgctgt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	14627523	14627525	TCT	-	DEL	DNAJB1	ENST00000254322	human	ensembl	69_37n	-1	known	in_frame_del	c.547_545	p.K182in_frame_del	1.000:1.000:1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB1	HGNC	ENSG00000132002	171	0	0	106	24	18.46	-	-	-	-	14627525	TCT	-	14627523	7	5	712	1	0	1	0	1	0	0	0	0	4650	1435	50	0	483	0	DNAJB1	19	14627523	In_Frame_Del	DEL	TCT	TCGA-D8-A1XQ-01A-11D-A14K-09	4758908	14627523	44501460	570	62908										
OR10H1	0	genome.wustl.edu	37	chr19	15918774	15918774	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaacagcaggaagagcatcAgctggaggtgggggaagaca	18	6	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	15918774	15918774	A	C	SNP	OR10H1	ENST00000334920	human	ensembl	69_37n	-1	known	missense	c.74	p.L25R	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H1	HGNC	ENSG00000186723	216	0	0	139	33	19.19	-	-	-	C	15918774	A	C	15918774	3	2	712	1	0	0	0	0	1	0	0	0	10978	188	7	5	886	5	OR10H1	19	15918774	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1291251	15918774	43210209	571	62909										
SLC5A5	0	genome.wustl.edu	37	chr19	17983266	17983268	+	In_Frame_Del	DEL	CTT	CTT	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggcagcgcagcgctgaggaCttcttcaccgggggccggcg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	17983266	17983268	CTT	-	DEL	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	in_frame_del	c.138_140	p.F48in_frame_del	1.000:1.000:1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	19	0	0	15	3	16.67	-	-	-	-	17983268	CTT	-	17983266	7	5	712	1	0	1	0	1	0	0	0	0	14757	564	20	0	140	0	SLC5A5	19	17983266	In_Frame_Del	DEL	CTT	TCGA-D8-A1XQ-01A-11D-A14K-09	2064492	17983266	41145717	572	62910										
PIK3R2	0	genome.wustl.edu	37	chr19	18273878	18273878	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cgttgtggacctcatcaatcActaccgccacgagtctctgg	9	14	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	18273878	18273878	A	G	SNP	PIK3R2	ENST00000222254	human	ensembl	69_37n	1	known	missense	c.1211	p.H404R	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647	97	0	0	61	15	19.48	-	-	-	G	18273878	A	G	18273878	3	3	712	1	0	0	0	0	1	0	0	0	11993	159	6	5	1245	5	PIK3R2	19	18273878	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	290612	18273878	40855105	573	62911										
CRTC1	0	genome.wustl.edu	37	chr19	18886534	18886534	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acactcaactactcgcaggcGgccatgatgggcctcacggg	12	14	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	18886534	18886534	G	A	SNP	CRTC1	ENST00000338797	human	ensembl	69_37n	1	known	silent	c.1644	p.A548	0.495	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662	20	0	0	7	6	46.15	-	-	-	A	18886534	G	A	18886534	2	1	712	1	0	0	0	0	0	0	0	1	3929	1103	39	1		1	CRTC1	19	18886534	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	612656	18886534	40242449	574	62912										
ZNF208	0	genome.wustl.edu	37	chr19	22155407	22155407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttactaaaggttttgccaCattcttcacatttgtagggt	7	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	22155407	22155407	C	T	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2429	p.C810Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	84	0	0	64	23	26.44	-	-	-	T	22155407	C	T	22155407	3	4	712	1	0	0	0	0	1	0	0	0	17862	478	17	4	1417	4	ZNF208	19	22155407	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3268873	22155407	36973576	575	62913										
TSHZ3	0	genome.wustl.edu	37	chr19	31769191	31769191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttcagtcaagtaatggtatTtggaagagatgtcacacttc	9	6	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	31769191	31769191	T	C	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.1508	p.K503R	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	85	0	0	54	18	25	-	-	-	C	31769191	T	C	31769191	3	2	712	1	0	0	0	0	1	0	0	0	16721	1841	64	5	1741	5	TSHZ3	19	31769191	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	9613784	31769191	27359792	576	62914										
ZNF599	0	genome.wustl.edu	37	chr19	35249962	35249962	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aactctggtatgaatctttcGatggtgagtgaacgatgaac	11	6	2	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	35249962	35249962	G	A	SNP	ZNF599	ENST00000329285	human	ensembl	69_37n	-1	known	nonsense	c.1744	p.R582*	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896	89	0	0	90	17	15.89	-	-	-	A	35249962	G	A	35249962	4	1	712	1	0	0	0	0	0	1	0	0	18125	1066	37	1	26	1	ZNF599	19	35249962	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3480771	35249962	23879021	577	62915										
ZFP14	0	genome.wustl.edu	37	chr19	36851395	36851395	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaggttccttcctttcttcAtccaataaggtaatcacatc	4	13	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	36851395	36851395	A	G	SNP	ZFP14	ENST00000270001	human	ensembl	69_37n	-1	known	silent	c.177	p.D59	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP14	HGNC	ENSG00000142065	229	0	0	184	48	20.69	-	-	-	G	36851395	A	G	36851395	2	3	712	1	0	0	0	0	0	0	0	1	17735	214	8	5		5	ZFP14	19	36851395	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1601433	36851395	22277588	578	62916										
ZNF568	0	genome.wustl.edu	37	chr19	37440919	37440919	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaatgtggaaaagctttcatTcagatgtcaaaccttattag	8	6	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	37440919	37440919	T	C	SNP	ZNF568	ENST00000333987	human	ensembl	69_37n	1	known	silent	c.864	p.I288	0.747	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	51	0	0	49	8	14.04	-	-	-	C	37440919	T	C	37440919	2	2	712	1	0	0	0	0	0	0	0	1	18095	1771	62	5		5	ZNF568	19	37440919	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	589524	37440919	21688064	579	62917										
ZNF793	0	genome.wustl.edu	37	chr19	38027832	38027832	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agttaatatccagaggaaaaGacggcaagacatgcttttga	10	6	0	4			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	38027832	38027832	G	C	SNP	ZNF793	ENST00000445217	human	ensembl	69_37n	1	known	missense	c.272	p.R91T	0.678	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227	36	0	0	36	25	40.98	-	-	-	C	38027832	G	C	38027832	3	2	712	1	0	0	0	0	1	0	0	0	18258	942	33	2	286	2	ZNF793	19	38027832	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	586913	38027832	21101151	580	62918										
ACTN4	0	genome.wustl.edu	37	chr19	39217680	39217680	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaccagatcctcacccgcgaCgccaagggcatcagccagga	10	16	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	39217680	39217680	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	silent	c.2274	p.D758	0.992	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	56	0	0	57	7	10.94	-	-	-	T	39217680	C	T	39217680	2	4	712	1	0	0	0	0	0	0	0	1	207	535	19	1		1	ACTN4	19	39217680	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1189848	39217680	19911303	581	62919										
IL29	0	genome.wustl.edu	37	chr19	39787501	39787501	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctcctgtcttccccgggaaTtgggacctgaggcttctcca	10	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	39787501	39787501	T	C	SNP	IL29	ENST00000333625	human	ensembl	69_37n	1	known	silent	c.228	p.N76	0.001	NULL	NULL	-	no_errors	IL29	HGNC	ENSG00000182393	61	0	0	74	12	13.95	-	-	-	C	39787501	T	C	39787501	2	2	712	1	0	0	0	0	0	0	0	1	7739	1490	52	5		5	IL29	19	39787501	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	569821	39787501	19341482	582	62920										
SUPT5H	0	genome.wustl.edu	37	chr19	39963851	39963851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgcgtccccaggggctcacGgcgcccgggcggcatgacct	15	17	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	39963851	39963851	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	missense	c.2267	p.R756Q	0.994	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	30	0	0	26	11	29.73	-	-	-	A	39963851	G	A	39963851	3	1	712	1	0	0	0	0	1	0	0	0	15490	1116	39	1	2357	1	SUPT5H	19	39963851	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	176350	39963851	19165132	583	62921										
ZNF780A	0	genome.wustl.edu	37	chr19	40580829	40580829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtaaagtctaaaagccttcCcacactccttacattcatag	5	12	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	40580829	40580829	C	A	SNP	ZNF780A	ENST00000455521	human	ensembl	69_37n	-1	known	missense	c.1523	p.G508V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	103	0	0	61	30	32.97	-	-	-	A	40580829	C	A	40580829	3	1	712	1	0	0	0	0	1	0	0	0	18245	623	22	4	536	4	ZNF780A	19	40580829	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	616978	40580829	18548154	584	62922										
SPTBN4	0	genome.wustl.edu	37	chr19	41063061	41063061	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagcggccaccatggccgagTggaaggacggactgaacgag	16	11	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	41063061	41063061	T	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.5422	p.W1808R	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	36	0	0	35	6	14.63	-	-	-	A	41063061	T	A	41063061	3	1	712	1	0	0	0	0	1	0	0	0	15212	1696	59	5	5520	5	SPTBN4	19	41063061	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	482232	41063061	18065922	585	62923										
ARHGEF1	0	genome.wustl.edu	37	chr19	42396865	42396865	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcgggaccgagccagctacGaggcccgggagcggcacgtg	19	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	42396865	42396865	G	T	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	1	known	nonsense	c.505	p.E169*	0.977	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	14	0	0	13	11	45.83	-	-	-	T	42396865	G	T	42396865	4	4	712	1	0	0	0	0	0	1	0	0	895	1059	37	3	630	3	ARHGEF1	19	42396865	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1333804	42396865	16732118	586	62924										
MEGF8	0	genome.wustl.edu	37	chr19	42873850	42873850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttggggcgcgtgaccactGcttgctctgccgcaaccaca	12	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	42873850	42873850	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.6809	p.C2270Y	1.000	smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	9	0	0	13	6	31.58	-	-	-	A	42873850	G	A	42873850	3	1	712	1	0	0	0	0	1	0	0	0	9534	1319	46	4	6754	4	MEGF8	19	42873850	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	476985	42873850	16255133	587	62925										
CEACAM1	0	genome.wustl.edu	37	chr19	43023125	43023125	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acgttcagcatgatggggtcGctttggttcttactgattgg	13	7	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	43023125	43023125	G	A	SNP	CEACAM1	ENST00000161559	human	ensembl	69_37n	-1	known	silent	c.1221	p.S407	0.004	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM1	HGNC	ENSG00000079385	207	0	0	183	41	18.3	-	-	-	A	43023125	G	A	43023125	2	1	712	1	0	0	0	0	0	0	0	1	3216	1078	38	1		1	CEACAM1	19	43023125	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	149275	43023125	16105858	588	62926										
PSG2	0	genome.wustl.edu	37	chr19	43570753	43570753	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagtcctattcttgtagaagCtgtcatggaaagaaaagtaa	9	5	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	43570753	43570753	C	A	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	splice_site	c.965-1	e5-1	0.019	-	-	-	no_errors	PSG2	HGNC	ENSG00000242221	240	0	0	158	34	17.71	-	-	-	A	43570753	C	A	43570753	5	1	712	1	0	0	0	0	0	0	1	0	12735	811	28	4	47	4	PSG2	19	43570753	Splice_Site	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	547628	43570753	15558230	589	62927										
RELB	0	genome.wustl.edu	37	chr19	45535999	45535999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctttcacgtacctgcctcGcgaccatggtaactacagca	8	15	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	45535999	45535999	G	A	SNP	RELB	ENST00000221452	human	ensembl	69_37n	1	known	missense	c.1199	p.R400H	0.992	superfamily_Ig_E-set,prints_NF_Rel_dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	RELB	HGNC	ENSG00000104856	73	0	0	43	5	10.42	-	-	-	A	45535999	G	A	45535999	3	1	712	1	0	0	0	0	1	0	0	0	13300	1087	38	1	1225	1	RELB	19	45535999	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1965246	45535999	13592984	590	62928										
SNRPD2	0	genome.wustl.edu	37	chr19	46190825	46190825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cggcccctacttgccggcgaTgagcgggttccgcaggacca	14	15	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	46190825	46190825	T	C	SNP	SNRPD2	ENST00000342669	human	ensembl	69_37n	-1	known	missense	c.343	p.I115V	1.000	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD2	HGNC	ENSG00000125743	74	0	0	80	28	25.93	-	-	-	C	46190825	T	C	46190825	3	2	712	1	0	0	0	0	1	0	0	0	14954	1464	51	5	17	5	SNRPD2	19	46190825	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	654826	46190825	12938158	591	62929										
NAPSA	0	genome.wustl.edu	37	chr19	50865322	50865322	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaagttttgtggaggcgttcCcagcccaatttccccaaaat	9	11	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	50865322	50865322	C	A	SNP	NAPSA	ENST00000253719	human	ensembl	69_37n	-1	known	nonsense	c.253	p.G85*	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	NAPSA	HGNC	ENSG00000131400	78	0	0	97	14	12.61	-	-	-	A	50865322	C	A	50865322	4	1	712	1	0	0	0	0	0	1	0	0	10238	632	22	4	1037	4	NAPSA	19	50865322	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	4674497	50865322	8263661	592	62930										
SIGLEC7	0	genome.wustl.edu	37	chr19	51646010	51646010	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttctttcgtatggagaaaggAaatataaaatggaattataa	8	2	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	51646010	51646010	A	G	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	silent	c.384	p.G128	0.257	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	91	0	0	91	22	19.47	-	-	-	G	51646010	A	G	51646010	2	3	712	1	0	0	0	0	0	0	0	1	14402	233	9	5		5	SIGLEC7	19	51646010	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	780688	51646010	7482973	593	62931										
SIGLEC8	0	genome.wustl.edu	37	chr19	51958839	51958839	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggtcaggctcccccgggtcCagctcagcctggcaggggga	17	14	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	51958839	51958839	C	A	SNP	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	missense	c.884	p.W295L	0.139	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	51	0	0	96	17	15.04	-	-	-	A	51958839	C	A	51958839	3	1	712	1	0	0	0	0	1	0	0	0	14403	595	21	4	631	4	SIGLEC8	19	51958839	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	312829	51958839	7170144	594	62932										
CEACAM18	0	genome.wustl.edu	37	chr19	51984902	51984903	+	Frame_Shift_Del	DEL	TC	TC	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctttcagagaagtgaacgcaTctctctgactgtggcctgtg							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	51984902	51984903	TC	-	DEL	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	frame_shift_del	c.839_840	p.L282fs	0.001:0.000	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	110	0	0	138	18	11.54	-	-	-	-	51984903	TC	-	51984902	7	5	712	1	0	1	0	1	0	0	0	0	3218	1435	50	0	853	0	CEACAM18	19	51984902	Frame_Shift_Del	DEL	TC	TCGA-D8-A1XQ-01A-11D-A14K-09	26063	51984902	7144081	595	62933										
ZNF613	0	genome.wustl.edu	37	chr19	52443493	52443493	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctggaggatgtggctgtggAgttcacttgggaggagtggc	19	6	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	52443493	52443493	A	C	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	1	known	missense	c.47	p.E16A	0.917	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	153	0	0	136	26	15.76	-	-	-	C	52443493	A	C	52443493	3	2	712	1	0	0	0	0	1	0	0	0	18134	304	11	5	53	5	ZNF613	19	52443493	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	458591	52443493	6685490	596	62934										
LILRA4	0	genome.wustl.edu	37	chr19	54848965	54848965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gagggagggcttcctagacaCgcctggagggaaagatgagt	17	7	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	54848965	54848965	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.658	p.V220M	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	41	0	0	42	7	14.29	-	-	-	T	54848965	C	T	54848965	3	4	712	1	0	0	0	0	1	0	0	0	8842	536	19	1	857	1	LILRA4	19	54848965	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2405472	54848965	4280018	597	62935										
TNNI3	0	genome.wustl.edu	37	chr19	55668470	55668470	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agttggaggagcggcgtctgAttggggctggtgcagggcga	21	6	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	55668470	55668470	A	G	SNP	TNNI3	ENST00000344887	human	ensembl	69_37n	-1	known	missense	c.56	p.I19T	0.220	pfam_Troponin-I_N	pfam_Troponin,pfam_Troponin-I_N	-	no_errors	TNNI3	HGNC	ENSG00000129991	62	0	0	82	14	14.43	-	-	-	G	55668470	A	G	55668470	3	3	712	1	0	0	0	0	1	0	0	0	16423	333	12	5	600	5	TNNI3	19	55668470	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	819505	55668470	3460513	598	62936										
ZNF324B	0	genome.wustl.edu	37	chr19	58967047	58967047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agccctcgacctgggacgagCtgggcgaggctcttcacgct	14	14	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	19	58967047	58967047	C	G	SNP	ZNF324B	ENST00000336614	human	ensembl	69_37n	1	known	missense	c.736	p.L246V	0.560	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324B	HGNC	ENSG00000249471	10	0	0	3	4	57.14	-	-	-	G	58967047	C	G	58967047	3	3	712	1	0	0	0	0	1	0	0	0	17941	796	28	4	746	4	ZNF324B	19	58967047	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3298577	58967047	161936	599	62937										
DEFB126	0	genome.wustl.edu	37	chr20	126075	126075	+	Frame_Shift_Del	DEL	G	G	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtaattggtatgtgaaaaaGtgtctaaacgacgttggaat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	126075	126075	G	-	DEL	DEFB126	ENST00000382398	human	ensembl	69_37n	1	known	frame_shift_del	c.78	p.K26fs	0.785	NULL	NULL	-	no_errors	DEFB126	HGNC	ENSG00000125788	74	0	0	41	11	20.37	-	-	-	-	126075	G	-	126075	7	5	712	1	0	1	0	1	0	0	0	0	4447	1020	36	0	84	0	DEFB126	20	126075	Frame_Shift_Del	DEL	G	TCGA-D8-A1XQ-01A-11D-A14K-09		126075	62899445	600	62938										
SIRPA	0	genome.wustl.edu	37	chr20	1903212	1903212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	acctgccaggtggagcatgaCgggcagccagcggtcagcaa	15	12	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	1903212	1903212	C	T	SNP	SIRPA	ENST00000400068	human	ensembl	69_37n	1	known	silent	c.1008	p.D336	0.002	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPA	HGNC	ENSG00000198053	125	0	0	103	26	20.16	-	-	-	T	1903212	C	T	1903212	2	4	712	1	0	0	0	0	0	0	0	1	14421	535	19	1		1	SIRPA	20	1903212	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1777137	1903212	61122308	601	62939										
TMC2	0	genome.wustl.edu	37	chr20	2517917	2517917	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caatcctgtctcttacagcaCgaggcggagtgaaagggcgg	14	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	2517917	2517917	C	T	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	nonsense	c.37	p.R13*	0.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	59	0	0	52	19	26.76	-	-	-	T	2517917	C	T	2517917	4	4	712	1	0	0	0	0	0	1	0	0	16080	528	19	1	43	1	TMC2	20	2517917	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	614705	2517917	60507603	602	62940										
PLCB1	0	genome.wustl.edu	37	chr20	8609062	8609064	+	In_Frame_Del	DEL	AAG	AAG	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttgaatctcgtggctttccAagaagaagtggccaaggtat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	8609062	8609064	AAG	-	DEL	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	in_frame_del	c.368_370	p.E125in_frame_del	1.000:1.000:1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	55	0	0	70	15	17.65	-	-	-	-	8609064	AAG	-	8609062	7	5	712	1	0	1	0	1	0	0	0	0	12101	130	5	0	382	0	PLCB1	20	8609062	In_Frame_Del	DEL	AAG	TCGA-D8-A1XQ-01A-11D-A14K-09	6091145	8609062	54416458	603	62941										
PAK7	0	genome.wustl.edu	37	chr20	9523310	9523311	+	Frame_Shift_Ins	INS	-	-	G													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggggaggctcattgaagtaINSggggggctcgccatcaatca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	9523310	9523311	-	G	INS	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1927_1926	p.Y642fs	1.000:0.882	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	71	0	0	74	25	25.25	-	-	-	G	9523311	-	G	9523310	7	5	712	1	0	1	1	0	0	0	0	0	11478	420	15	0	240	0	PAK7	20	9523310	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	914248	9523310	53502210	604	62942										
SNAP25	0	genome.wustl.edu	37	chr20	10256204	10256204	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcgaagggctgaccagttggCtgatgaggtaaggagtggag	19	5	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	10256204	10256204	C	G	SNP	SNAP25	ENST00000254976	human	ensembl	69_37n	1	known	missense	c.65	p.A22G	1.000	smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639	122	0	0	93	44	32.12	-	-	-	G	10256204	C	G	10256204	3	3	712	1	0	0	0	0	1	0	0	0	14919	797	28	4	67	4	SNAP25	20	10256204	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	732894	10256204	52769316	605	62943										
OTOR	0	genome.wustl.edu	37	chr20	16729577	16729577	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actgtagattcattaacgttAaaaaagggcagcagatctat							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	16729577	16729577	A	-	DEL	OTOR	ENST00000246081	human	ensembl	69_37n	1	known	frame_shift_del	c.181	p.Q64fs	0.997	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879	142	0	0	112	33	22.76	-	-	-	-	16729577	A	-	16729577	7	5	712	1	0	1	0	1	0	0	0	0	11381	363	13	0	187	0	OTOR	20	16729577	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	6473373	16729577	46295943	606	62944										
BFSP1	0	genome.wustl.edu	37	chr20	17475657	17475657	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttttgctgctgttatatcctGcagagctctggtaagatctg	10	8	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	17475657	17475657	G	A	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	nonsense	c.1060	p.Q354*	1.000	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	281	0	0	184	51	21.7	-	-	-	A	17475657	G	A	17475657	4	1	712	1	0	0	0	0	0	1	0	0	1420	1328	46	4	941	4	BFSP1	20	17475657	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	746080	17475657	45549863	607	62945										
RALGAPA2	0	genome.wustl.edu	37	chr20	20582459	20582459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agagaaaaggacctccccacGgtggttcctttctgaggatc	11	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	20582459	20582459	G	A	SNP	RALGAPA2	ENST00000430436	human	ensembl	69_37n	-1	known	missense	c.1520	p.P507L	0.017	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGAPA2	HGNC	ENSG00000188559	38	0	0	34	10	22.73	-	-	-	A	20582459	G	A	20582459	3	1	712	1	0	0	0	0	1	0	0	0	13097	1103	39	1	3647	1	RALGAPA2	20	20582459	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3106802	20582459	42443061	608	62946										
CD93	0	genome.wustl.edu	37	chr20	23066230	23066230	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtctggaagggggtggtgtaGgtcacctgacctgggccccc	17	11	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	23066230	23066230	G	T	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	silent	c.600	p.T200	0.546	pirsf_CD93/CD141	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	48	0	0	31	8	20.51	-	-	-	T	23066230	G	T	23066230	2	4	712	1	0	0	0	0	0	0	0	1	3076	987	35	4		4	CD93	20	23066230	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2483771	23066230	39959290	609	62947										
ASXL1	0	genome.wustl.edu	37	chr20	31021221	31021221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cacccgacagcgagatgggcAttttaagaaacgctctcggc	11	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	31021221	31021221	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.1220	p.H407R	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	55	0	0	62	13	17.33	-	-	-	G	31021221	A	G	31021221	3	3	712	1	0	0	0	0	1	0	0	0	1070	217	8	5	1272	5	ASXL1	20	31021221	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	7954991	31021221	32004299	610	62948										
RALY	0	genome.wustl.edu	37	chr20	32660049	32660049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctgttctgtgcacaagggcTatgcctttgttcagtactcc	10	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	32660049	32660049	T	C	SNP	RALY	ENST00000246194	human	ensembl	69_37n	1	known	missense	c.169	p.Y57H	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	58	0	0	60	14	18.92	-	-	-	C	32660049	T	C	32660049	3	2	712	1	0	0	0	0	1	0	0	0	13102	1522	53	5	171	5	RALY	20	32660049	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1638828	32660049	30365471	611	62949										
EDEM2	0	genome.wustl.edu	37	chr20	33703267	33703267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctaggaaaacctgtcccagtAatgccaacttggaggtgaag	11	9	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	33703267	33703267	A	G	SNP	EDEM2	ENST00000374492	human	ensembl	69_37n	-1	known	missense	c.1706	p.L569S	0.990	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298	89	0	0	122	25	16.89	-	-	-	G	33703267	A	G	33703267	3	3	712	1	0	0	0	0	1	0	0	0	4947	372	13	5	34	5	EDEM2	20	33703267	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1043218	33703267	29322253	612	62950										
DHX35	0	genome.wustl.edu	37	chr20	37632533	37632533	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgaaagtgtttgaaagggtgTcacgcagtgtcagaaaggtg	15	4	2	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	37632533	37632533	T	C	SNP	DHX35	ENST00000252011	human	ensembl	69_37n	1	known	missense	c.994	p.S332P	0.986	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452	67	0	0	79	10	11.24	-	-	-	C	37632533	T	C	37632533	3	2	712	1	0	0	0	0	1	0	0	0	4544	1667	58	5	1036	5	DHX35	20	37632533	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3929266	37632533	25392987	613	62951										
PTPRT	0	genome.wustl.edu	37	chr20	40790037	40790037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccctggcctctcttcatctgCgtgatgtgctgcagcaagtc	10	14	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	40790037	40790037	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.2703	p.T901	0.882	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	58	0	0	87	10	10.31	-	-	-	T	40790037	C	T	40790037	2	4	712	1	0	0	0	0	0	0	0	1	12895	755	27	1		1	PTPRT	20	40790037	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3157504	40790037	22235483	614	62952										
WFDC5	0	genome.wustl.edu	37	chr20	43743663	43743663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttcttcctgccaaagacaGcaggcagctgactccccaca	7	17	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	43743663	43743663	G	A	SNP	WFDC5	ENST00000307971	human	ensembl	69_37n	-1	known	missense	c.62	p.A21V	0.061	superfamily_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC5	HGNC	ENSG00000175121	61	0	0	67	11	14.1	-	-	-	A	43743663	G	A	43743663	3	1	712	1	0	0	0	0	1	0	0	0	17451	971	34	4	325	4	WFDC5	20	43743663	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2953626	43743663	19281857	615	62953										
ZSWIM3	0	genome.wustl.edu	37	chr20	44506372	44506372	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcttgcgtgtaacacctacaTggacagcctagacattgtca	9	11	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	44506372	44506372	T	C	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	1	known	missense	c.1175	p.M392T	1.000	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	38	0	0	49	12	19.67	-	-	-	C	44506372	T	C	44506372	3	2	712	1	0	0	0	0	1	0	0	0	18333	1464	51	5	1181	5	ZSWIM3	20	44506372	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	762709	44506372	18519148	616	62954										
ZNF334	0	genome.wustl.edu	37	chr20	45130337	45130337	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cagtaggttctcccacattcAttgcattcatatggtctctc	6	12	4	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	45130337	45130337	A	G	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	silent	c.1641	p.N547	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	88	0	0	107	20	15.75	-	-	-	G	45130337	A	G	45130337	2	3	712	1	0	0	0	0	0	0	0	1	17947	214	8	5		5	ZNF334	20	45130337	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	623965	45130337	17895183	617	62955										
ATP9A	0	genome.wustl.edu	37	chr20	50256004	50256004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agactggtctcggcccaccaGggttaagcccacactttccg	10	15	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	50256004	50256004	G	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.1546	p.L516M	0.996	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	63	0	0	85	17	16.67	-	-	-	T	50256004	G	T	50256004	3	4	712	1	0	0	0	0	1	0	0	0	1202	991	35	4	1653	4	ATP9A	20	50256004	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5125667	50256004	12769516	618	62956										
TFAP2C	0	genome.wustl.edu	37	chr20	55209319	55209319	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gactctcctgacatccttagTagaaggtcagtggggttttg	12	8	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	55209319	55209319	T	C	SNP	TFAP2C	ENST00000201031	human	ensembl	69_37n	1	known	missense	c.917	p.V306A	0.998	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510	76	0	0	56	10	15.15	-	-	-	C	55209319	T	C	55209319	3	2	712	1	0	0	0	0	1	0	0	0	15884	1638	57	5	935	5	TFAP2C	20	55209319	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	4953315	55209319	7816201	619	62957										
CDH4	0	genome.wustl.edu	37	chr20	60498601	60498601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggaatccagatgtccttccaGtccacggcaggggtgaccat	12	12	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	60498601	60498601	G	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	silent	c.1467	p.Q489	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	47	0	0	44	12	21.43	-	-	-	A	60498601	G	A	60498601	2	1	712	1	0	0	0	0	0	0	0	1	3141	1020	36	4		4	CDH4	20	60498601	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5289282	60498601	2526919	620	62958										
SLC17A9	0	genome.wustl.edu	37	chr20	61588223	61588223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctccatgagccaggacttcGgctggaacaagaaggaggcc	13	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	61588223	61588223	G	A	SNP	SLC17A9	ENST00000370351	human	ensembl	69_37n	1	known	missense	c.166	p.G56S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194	36	0	0	35	11	23.91	-	-	-	A	61588223	G	A	61588223	3	1	712	1	0	0	0	0	1	0	0	0	14513	1116	39	1	172	1	SLC17A9	20	61588223	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1089622	61588223	1437297	621	62959										
CHRNA4	0	genome.wustl.edu	37	chr20	61981463	61981463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggctttctcagcttccagggGctgctgaggagggagctggt	17	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	61981463	61981463	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	69_37n	-1	known	missense	c.1300	p.P434S	0.002	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	10	0	0	12	7	36.84	-	-	-	A	61981463	G	A	61981463	3	1	712	1	0	0	0	0	1	0	0	0	3414	1203	42	4	591	4	CHRNA4	20	61981463	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	393240	61981463	1044057	622	62960										
CHRNA4	0	genome.wustl.edu	37	chr20	61981948	61981948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcacagcgtgatcttctcgCcacactcggagggcaggtag	13	12	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	20	61981948	61981948	C	T	SNP	CHRNA4	ENST00000370263	human	ensembl	69_37n	-1	known	missense	c.815	p.G272D	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	308	0	0	268	66	19.76	-	-	-	T	61981948	C	T	61981948	3	4	712	1	0	0	0	0	1	0	0	0	3414	739	26	4	1076	4	CHRNA4	20	61981948	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	485	61981948	1043572	623	62961										
TMPRSS15	0	genome.wustl.edu	37	chr21	19775875	19775875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccaatatggcaaagagagctGcaaacatgatttcataggag	10	7	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	19775875	19775875	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.65	p.A22V	0.015	NULL	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	151	1	0.66	86	60	41.1	-	-	-	A	19775875	G	A	19775875	3	1	712	1	0	0	0	0	1	0	0	0	16341	1319	46	4	3094	4	TMPRSS15	21	19775875	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09		19775875	28354020	624	62962										
IFNAR2	0	genome.wustl.edu	37	chr21	34617290	34617290	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcttgcactttcaagatatcAttgcgaaatttccggtccat	6	10	3	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	34617290	34617290	A	G	SNP	IFNAR2	ENST00000342136	human	ensembl	69_37n	1	known	silent	c.132	p.S44	0.000	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IFNAR2	HGNC	ENSG00000159110	186	0	0	149	48	24.37	-	-	-	G	34617290	A	G	34617290	2	3	712	1	0	0	0	0	0	0	0	1	7599	204	8	5		5	IFNAR2	21	34617290	Silent	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	14841415	34617290	13512605	625	62963										
ITSN1	0	genome.wustl.edu	37	chr21	35183328	35183328	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctggcttggaggagaattaaAaggaaagacagggtggttcc	15	5	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	35183328	35183328	A	G	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.2369	p.K790R	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	47	0	0	38	10	20.83	-	-	-	G	35183328	A	G	35183328	3	3	712	1	0	0	0	0	1	0	0	0	7980	14	1	5	2447	5	ITSN1	21	35183328	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	566038	35183328	12946567	626	62964										
BRWD1	0	genome.wustl.edu	37	chr21	40646341	40646341	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccaataaaatgctcctccaTtctaactgctcaaatctcca	2	14	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	40646341	40646341	T	A	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.1203	p.E401D	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	211	0	0	187	33	14.93	-	-	-	A	40646341	T	A	40646341	3	1	712	1	0	0	0	0	1	0	0	0	1533	1490	52	5	6118	5	BRWD1	21	40646341	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5463013	40646341	7483554	627	62965										
SLC37A1	0	genome.wustl.edu	37	chr21	43959732	43959732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtatttctacaacatccacaGtttcggattctacgtggtaa	7	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	43959732	43959732	G	A	SNP	SLC37A1	ENST00000352133	human	ensembl	69_37n	1	known	missense	c.461	p.S154N	0.431	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190	128	0	0	131	29	18.12	-	-	-	A	43959732	G	A	43959732	3	1	712	1	0	0	0	0	1	0	0	0	14686	1029	36	4	479	4	SLC37A1	21	43959732	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3313391	43959732	4170163	628	62966										
TRPM2	0	genome.wustl.edu	37	chr21	45819238	45819238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccagaaactgctcacccgcGtgtccgaggcctgggggaag	14	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	45819238	45819238	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.2122	p.V708M	0.983	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	13	0	0	24	8	25	-	-	-	A	45819238	G	A	45819238	3	1	712	1	0	0	0	0	1	0	0	0	16682	1145	40	1	2176	1	TRPM2	21	45819238	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1859506	45819238	2310657	629	62967										
COL18A1	0	genome.wustl.edu	37	chr21	46907403	46907403	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggcccttctggtcaacagccCgaagcgctgatgggccacag	13	14	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	46907403	46907403	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	nonsense	c.3121	p.R1041*	0.004	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	28	0	0	35	13	26.53	-	-	-	T	46907403	C	T	46907403	4	4	712	1	0	0	0	0	0	1	0	0	3705	644	23	1	3297	1	COL18A1	21	46907403	Nonsense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	1088165	46907403	1222492	630	62968										
FTCD	0	genome.wustl.edu	37	chr21	47565364	47565364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aaggcctcggcgtcggcatcCaccagcgtggttagcttggc	14	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	47565364	47565364	C	T	SNP	FTCD	ENST00000359679	human	ensembl	69_37n	-1	known	silent	c.1227	p.V409	1.000	pfam_Cyclodeamin/CycHdrlase,superfamily_Cyclodeamin/CycHdrlase	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282	8	0	0	8	5	38.46	-	-	-	T	47565364	C	T	47565364	2	4	712	1	0	0	0	0	0	0	0	1	6130	581	21	4		4	FTCD	21	47565364	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	657961	47565364	564531	631	62969										
LSS	0	genome.wustl.edu	37	chr21	47611798	47611798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggtccctggcggcatacctgCggccagtcgccattggggag	16	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	47611798	47611798	C	T	SNP	LSS	ENST00000419093	human	ensembl	69_37n	-1	putative	missense	c.166	p.A56T	0.795	superfamily_Terpenoid_cyclase/PrenylTrfase	superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LSS	HGNC	ENSG00000160285	78	0	0	64	13	16.88	-	-	-	T	47611798	C	T	47611798	3	4	712	1	0	0	0	0	1	0	0	0	9131	755	27	1	142	1	LSS	21	47611798	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	46434	47611798	518097	632	62970										
MCM3AP	0	genome.wustl.edu	37	chr21	47663638	47663638	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cacacggggagccagggggcTggggagaaagtgcctcatta	17	9	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	47663638	47663638	T	C	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	splice_site	c.5039-2	e24-2	1.000	-	-	-	no_errors	MCM3AP	HGNC	ENSG00000160294	60	0	0	46	17	26.98	-	-	-	C	47663638	T	C	47663638	5	2	712	1	0	0	0	0	0	0	1	0	9459	1594	55	5	925	5	MCM3AP	21	47663638	Splice_Site	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	51840	47663638	466257	633	62971										
S100B	0	genome.wustl.edu	37	chr21	48022227	48022227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agctcattgttgatgagctcCttcagttcggatttcttcag	9	9	4	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	21	48022227	48022227	C	A	SNP	S100B	ENST00000291700	human	ensembl	69_37n	-1	known	missense	c.102	p.K34N	1.000	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100B	HGNC	ENSG00000160307	134	0	0	99	28	22.05	-	-	-	A	48022227	C	A	48022227	3	1	712	1	0	0	0	0	1	0	0	0	13874	680	24	4	184	4	S100B	21	48022227	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	358589	48022227	107668	634	62972										
CECR2	0	genome.wustl.edu	37	chr22	18016903	18016903	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caattcccccatgagagaggAaaaaaagactaaagacctgt							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	18016903	18016903	A	-	DEL	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	frame_shift_del	c.1154	p.K387fs	0.749	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	77	0	0	29	14	32.56	-	-	-	-	18016903	A	-	18016903	7	5	712	1	0	1	0	1	0	0	0	0	3235	246	9	0	1190	0	CECR2	22	18016903	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09		18016903	33287663	635	62973										
HIRA	0	genome.wustl.edu	37	chr22	19394707	19394707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gaaaggaaaatgatgcttacGtagcccgcttccacaccata	8	11	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	19394707	19394707	G	A	SNP	HIRA	ENST00000263208	human	ensembl	69_37n	-1	known	missense	c.302	p.T101M	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	124	0	0	68	22	24.44	-	-	-	A	19394707	G	A	19394707	3	1	712	1	0	0	0	0	1	0	0	0	7171	1159	40	1	2839	1	HIRA	22	19394707	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1377804	19394707	31909859	636	62974										
AIFM3	0	genome.wustl.edu	37	chr22	21330779	21330779	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggatgccaatcgcgtggtgAggctggcccgaggccgcaac	16	12	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	21330779	21330779	A	G	SNP	AIFM3	ENST00000399167	human	ensembl	69_37n	1	known	missense	c.982	p.R328G	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773	110	0	0	79	38	32.48	-	-	-	G	21330779	A	G	21330779	3	3	712	1	0	0	0	0	1	0	0	0	428	295	11	5	1038	5	AIFM3	22	21330779	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1936072	21330779	29973787	637	62975										
IGLL5	0	genome.wustl.edu	37	chr22	23235986	23235986	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcttcggaactgggaccaagGtcaccgtcctaggtaagtgg	13	10	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	23235986	23235986	G	C	SNP	IGLL5	ENST00000532223	human	ensembl	69_37n	1	known	missense	c.316	p.V106L	0.007	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	IGLL5	HGNC	ENSG00000254709	113	0	0	106	21	16.54	-	-	-	C	23235986	G	C	23235986	3	2	712	1	0	0	0	0	1	0	0	0	7648	1261	44	4	319	4	IGLL5	22	23235986	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1905207	23235986	28068580	638	62976										
ASCC2	0	genome.wustl.edu	37	chr22	30210719	30210719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtgtggtattggccccgtccCcttgcaaaccacagtgctgg	12	13	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	30210719	30210719	C	T	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	missense	c.647	p.G216E	0.998	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	78	0	0	83	25	23.15	-	-	-	T	30210719	C	T	30210719	3	4	712	1	0	0	0	0	1	0	0	0	1036	623	22	4	1682	4	ASCC2	22	30210719	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	6974733	30210719	21093847	639	62977										
DEPDC5	0	genome.wustl.edu	37	chr22	32211093	32211093	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggaagtgaggagccaggctTctgacgacagctccctaggc	14	11	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	32211093	32211093	T	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.1561	p.S521T	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	85	0	0	58	21	26.58	-	-	-	A	32211093	T	A	32211093	3	1	712	1	0	0	0	0	1	0	0	0	4478	1783	62	5	1639	5	DEPDC5	22	32211093	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	2000374	32211093	19093473	640	62978										
C22orf28	0	genome.wustl.edu	37	chr22	32794005	32794006	+	Frame_Shift_Ins	INS	-	-	T													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcccttatggtcgatgcccaINStttttttagcagcatactca							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	32794005	32794006	-	T	INS	C22orf28	ENST00000216038	human	ensembl	69_37n	-1	known	frame_shift_ins	c.737_736	p.M246fs	1.000:1.000	pfam_RtcB_family,superfamily_RtcB_family	pfam_RtcB_family,superfamily_RtcB_family	-	no_errors	C22orf28	HGNC	ENSG00000100220	186	0	0	115	27	19.01	-	-	-	T	32794006	-	T	32794005	7	5	712	1	0	1	1	0	0	0	0	0	2160	217	8	0	804	0	C22orf28	22	32794005	Frame_Shift_Ins	INS	-	TCGA-D8-A1XQ-01A-11D-A14K-09	582912	32794005	18510561	641	62979										
APOL1	0	genome.wustl.edu	37	chr22	36661457	36661457	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctctggcatcctgaccctcgTcggcatgggtctggcaccct	11	16	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	36661457	36661457	T	A	SNP	APOL1	ENST00000319136	human	ensembl	69_37n	1	known	missense	c.623	p.V208D	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL1	HGNC	ENSG00000100342	52	0	0	62	8	11.43	-	-	-	A	36661457	T	A	36661457	3	1	712	1	0	0	0	0	1	0	0	0	807	1667	58	5	645	5	APOL1	22	36661457	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3867452	36661457	14643109	642	62980										
ELFN2	0	genome.wustl.edu	37	chr22	37770126	37770126	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccggcctccaaccccttggcGgtgggcagcttctccccgat	11	18	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	37770126	37770126	G	A	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	silent	c.1449	p.T483	0.011	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	23	0	0	36	7	16.28	-	-	-	A	37770126	G	A	37770126	2	1	712	1	0	0	0	0	0	0	0	1	5095	1103	39	1		1	ELFN2	22	37770126	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	1108669	37770126	13534440	643	62981										
GGA1	0	genome.wustl.edu	37	chr22	38017668	38017668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccatcccgaagacctccgcGcagccaataagctcatcaaa	6	17	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	38017668	38017668	G	A	SNP	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	missense	c.574	p.A192T	1.000	pfscan_GAT	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	57	0	0	50	9	15.25	-	-	-	A	38017668	G	A	38017668	3	1	712	1	0	0	0	0	1	0	0	0	6404	1087	38	1	666	1	GGA1	22	38017668	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	247542	38017668	13286898	644	62982										
GGA1	0	genome.wustl.edu	37	chr22	38028008	38028008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caccttctcccacaggcaacAtcctgcccgtgactgtgtat	7	16	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	38028008	38028008	A	G	SNP	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	missense	c.1534	p.I512V	1.000	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	59	0	0	44	29	39.19	-	-	-	G	38028008	A	G	38028008	3	3	712	1	0	0	0	0	1	0	0	0	6404	217	8	5	1658	5	GGA1	22	38028008	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	10340	38028008	13276558	645	62983										
SH3BP1	0	genome.wustl.edu	37	chr22	38039004	38039004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gtcctgcagccactcagcagGctgagtgaggtgagcctgtg	15	11	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	38039004	38039004	G	A	SNP	SH3BP1	ENST00000357436	human	ensembl	69_37n	1	known	silent	c.387	p.R129	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	13	0	0	19	8	28.57	-	-	-	A	38039004	G	A	38039004	2	1	712	1	0	0	0	0	0	0	0	1	14332	1194	42	4		4	SH3BP1	22	38039004	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	10996	38039004	13265562	646	62984										
XRCC6	0	genome.wustl.edu	37	chr22	42049645	42049645	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccttattttgtggctttggtGccacaggaagaagagttgga	13	6	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	42049645	42049645	G	A	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	1	known	silent	c.1242	p.V414	1.000	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_DNA_helicase_ATP-dep_Ku,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,tigrfam_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	137	1	0.72	119	34	22.22	-	-	-	A	42049645	G	A	42049645	2	1	712	1	0	0	0	0	0	0	0	1	17554	1306	46	4		4	XRCC6	22	42049645	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	4010641	42049645	9254921	647	62985										
GRAMD4	0	genome.wustl.edu	37	chr22	47061530	47061530	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aggtgtacatgaatgccgtgTggcatggctgggccatccca	14	10	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	47061530	47061530	T	C	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	missense	c.736	p.W246R	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	99	0	0	110	21	15.91	-	-	-	C	47061530	T	C	47061530	3	2	712	1	0	0	0	0	1	0	0	0	6803	1696	59	5	766	5	GRAMD4	22	47061530	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	5011885	47061530	4243036	648	62986										
ALG12	0	genome.wustl.edu	37	chr22	50301580	50301580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ggctgagtagaagtaccacaGcagcggggaggtctgcgggc	18	9	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	50301580	50301580	G	A	SNP	ALG12	ENST00000330817	human	ensembl	69_37n	-1	known	silent	c.781	p.L261	0.997	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858	30	0	0	49	12	19.67	-	-	-	A	50301580	G	A	50301580	2	1	712	1	0	0	0	0	0	0	0	1	514	962	34	4		4	ALG12	22	50301580	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	3240050	50301580	1002986	649	62987										
PANX2	0	genome.wustl.edu	37	chr22	50615379	50615379	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgcccccagaggaacccattTactgttacaccccgcacaac	6	17	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	22	50615379	50615379	T	C	SNP	PANX2	ENST00000395842	human	ensembl	69_37n	1	known	missense	c.238	p.Y80H	1.000	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150	35	0	0	29	4	11.76	-	-	-	C	50615379	T	C	50615379	3	2	712	1	0	0	0	0	1	0	0	0	11494	1754	61	5	244	5	PANX2	22	50615379	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	313799	50615379	689187	650	62988										
NLGN4X	0	genome.wustl.edu	37	chrX	5821330	5821330	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tagaagtaggtgggggagccGtactgcgcgtgcaggtcggc	19	8	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	5821330	5821330	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	silent	c.1449	p.Y483	0.967	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	30	0	0	30	9	23.08	-	-	-	A	5821330	G	A	5821330	2	1	712	1	0	0	0	0	0	0	0	1	10536	1140	40	1		1	NLGN4X	23	5821330	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09		5821330	149449230	651	62989										
FAM9B	0	genome.wustl.edu	37	chrX	8995993	8995993	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgttgccacttcttctgttgTtcttgaaatattctctagaa	6	8	4	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	8995993	8995993	T	C	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	silent	c.408	p.E136	0.481	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	302	0	0	140	52	27.08	-	-	-	C	8995993	T	C	8995993	2	2	712	1	0	0	0	0	0	0	0	1	5706	1722	60	5		5	FAM9B	23	8995993	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	3174663	8995993	146274567	652	62990										
MOSPD2	0	genome.wustl.edu	37	chrX	14929530	14929530	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	aagaacaaacacctcttcttAaaaaggtaactttataaata							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	14929530	14929530	A	-	DEL	MOSPD2	ENST00000380492	human	ensembl	69_37n	1	known	frame_shift_del	c.874	p.K293fs	0.948	NULL	pfam_CRAL-TRIO_dom,pfam_Major_sperm,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_Major_sperm	-	no_errors	MOSPD2	HGNC	ENSG00000130150	81	0	0	57	16	21.92	-	-	-	-	14929530	A	-	14929530	7	5	712	1	0	1	0	1	0	0	0	0	9788	363	13	0	908	0	MOSPD2	23	14929530	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5933537	14929530	140341030	653	62991										
RAI2	0	genome.wustl.edu	37	chrX	17819378	17819378	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gattcagaactctgaggcatCgggatggggatgggaatagg	17	5	2	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	17819378	17819378	C	T	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	silent	c.753	p.P251	0.003	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	145	0	0	118	25	17.48	-	-	-	T	17819378	C	T	17819378	2	4	712	1	0	0	0	0	0	0	0	1	13092	871	31	1		1	RAI2	23	17819378	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2889848	17819378	137451182	654	62992										
POLA1	0	genome.wustl.edu	37	chrX	24753571	24753571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	actgctaggttttttccttgCaaaagttcacaaaattgatc	6	8	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	24753571	24753571	C	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	missense	c.1889	p.A630V	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	205	0	0	230	35	13.21	-	-	-	T	24753571	C	T	24753571	3	4	712	1	0	0	0	0	1	0	0	0	12261	710	25	4	1941	4	POLA1	23	24753571	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	6934193	24753571	130516989	655	62993										
MAGEB4	0	genome.wustl.edu	37	chrX	30260712	30260712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tccctgagatcttcaggaaaGtctctcagcgcacggagctg	11	12	4	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	30260712	30260712	G	T	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.460	p.V154F	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	49	0	0	52	6	10.34	-	-	-	T	30260712	G	T	30260712	3	4	712	1	0	0	0	0	1	0	0	0	9249	1029	36	4	462	4	MAGEB4	23	30260712	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5507141	30260712	125009848	656	62994										
FAM47C	0	genome.wustl.edu	37	chrX	37026522	37026522	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caggaccggcccagttccccGggcatggactccacgccctg	12	18	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	37026522	37026522	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	silent	c.39	p.P13	0.055	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	37	0	0	37	7	15.91	-	-	-	A	37026522	G	A	37026522	2	1	712	1	0	0	0	0	0	0	0	1	5617	1103	39	1		1	FAM47C	23	37026522	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	6765810	37026522	118244038	657	62995										
LANCL3	0	genome.wustl.edu	37	chrX	37515047	37515047	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccccctgatgtattcttactAtggaaccgaatacttgggta	8	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	37515047	37515047	A	G	SNP	LANCL3	ENST00000378619	human	ensembl	69_37n	1	known	missense	c.680	p.Y227C	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036	126	1	0.79	103	23	18.25	-	-	-	G	37515047	A	G	37515047	3	3	712	1	0	0	0	0	1	0	0	0	8676	449	16	5	686	5	LANCL3	23	37515047	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	488525	37515047	117755513	658	62996										
SUV39H1	0	genome.wustl.edu	37	chrX	48558624	48558624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gctgctccggcggcaccaccGgtcaaagaccccccggcacc	11	20	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	48558624	48558624	G	A	SNP	SUV39H1	ENST00000337852	human	ensembl	69_37n	1	known	missense	c.341	p.R114Q	0.005	pirsf_Histone_H3-K9_MeTrfase	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945	19	0	0	9	9	50	-	-	-	A	48558624	G	A	48558624	3	1	712	1	0	0	0	0	1	0	0	0	15503	1116	39	1	318	1	SUV39H1	23	48558624	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	11043577	48558624	106711936	659	62997										
GAGE12J	0	genome.wustl.edu	37	chrX	49179681	49179681	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tcagtgtgaaatatgagttgGcgaggaagatcgacctatta	12	5	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	49179681	49179681	G	A	SNP	GAGE12J	ENST00000442437	human	ensembl	69_37n	1	known	nonsense	c.9	p.W3*	0.003	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE12J	HGNC	ENSG00000224659	515	0	0	608	71	10.46	-	-	-	A	49179681	G	A	49179681	4	1	712	1	0	0	0	0	0	1	0	0	6238	1212	42	4	11	4	GAGE12J	23	49179681	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	621057	49179681	106090879	660	62998										
AKAP4	0	genome.wustl.edu	37	chrX	49957212	49957212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caactcagcaagggctgcccCatcgttgctatacttagcca	8	14	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	49957212	49957212	C	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.2152	p.G718W	0.998	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	99	0	0	93	19	16.96	-	-	-	A	49957212	C	A	49957212	3	1	712	1	0	0	0	0	1	0	0	0	453	594	21	4	420	4	AKAP4	23	49957212	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	777531	49957212	105313348	661	62999										
SMC1A	0	genome.wustl.edu	37	chrX	53423295	53423295	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctccttctgtaaatgggtcAtttccctaaaaaaggtccag	7	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	53423295	53423295	A	T	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.2714	p.M905K	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	218	0	0	233	43	15.58	-	-	-	T	53423295	A	T	53423295	3	4	712	1	0	0	0	0	1	0	0	0	14870	217	8	5	1019	5	SMC1A	23	53423295	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	3466083	53423295	101847265	662	63000										
HUWE1	0	genome.wustl.edu	37	chrX	53589824	53589824	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgcaaggtggaagcttggCtgaggttggaaggagcttca	16	7	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	53589824	53589824	C	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.7172	p.S2391T	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	136	0	0	124	27	17.88	-	-	-	G	53589824	C	G	53589824	3	3	712	1	0	0	0	0	1	0	0	0	7515	797	28	4	6080	4	HUWE1	23	53589824	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	166529	53589824	101680736	663	63001										
P2RY10	0	genome.wustl.edu	37	chrX	78216912	78216912	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gccttgcaagtctctgctgcCttttggatccaattctttat	7	11	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	78216912	78216912	C	A	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.895	p.L299I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	176	0	0	125	70	35.9	-	-	-	A	78216912	C	A	78216912	3	1	712	1	0	0	0	0	1	0	0	0	11420	681	24	4	897	4	P2RY10	23	78216912	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	24627088	78216912	77053648	664	63002										
FAM46D	0	genome.wustl.edu	37	chrX	79698295	79698295	+	Frame_Shift_Del	DEL	T	T	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctataaggatctggacgttaTttttggtgttgagcttccag							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	79698295	79698295	T	-	DEL	FAM46D	ENST00000308293	human	ensembl	69_37n	1	known	frame_shift_del	c.257	p.F87fs	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	88	0	0	99	17	14.53	-	-	-	-	79698295	T	-	79698295	7	5	712	1	0	1	0	1	0	0	0	0	5614	1493	52	0	259	0	FAM46D	23	79698295	Frame_Shift_Del	DEL	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1481383	79698295	75572265	665	63003										
CHM	0	genome.wustl.edu	37	chrX	85211231	85211231	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agtgttgccataccgcccaaGacagtgaagaaagtttttgg	11	8	0	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	85211231	85211231	G	T	SNP	CHM	ENST00000357749	human	ensembl	69_37n	-1	known	missense	c.1093	p.L365I	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	102	0	0	116	26	18.31	-	-	-	T	85211231	G	T	85211231	3	4	712	1	0	0	0	0	1	0	0	0	3379	942	33	2	900	2	CHM	23	85211231	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	5512936	85211231	70059329	666	63004										
PCDH11X	0	genome.wustl.edu	37	chrX	91134145	91134145	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	catccaagaactgcctctcgAtaacacctttgtggcctgtg	8	13	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	91134145	91134145	A	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.2906	p.D969V	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	228	0	0	146	60	29.13	-	-	-	T	91134145	A	T	91134145	3	4	712	1	0	0	0	0	1	0	0	0	11581	333	12	5	2912	5	PCDH11X	23	91134145	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	5922914	91134145	64136415	667	63005										
TNMD	0	genome.wustl.edu	37	chrX	99849281	99849281	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tacactggcatctacttcgtGggtcttcaaaaatgttttat	7	8	3	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	99849281	99849281	G	T	SNP	TNMD	ENST00000373031	human	ensembl	69_37n	1	known	silent	c.345	p.V115	0.995	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005	254	0	0	152	34	18.28	-	-	-	T	99849281	G	T	99849281	2	4	712	1	0	0	0	0	0	0	0	1	16417	1335	47	4		4	TNMD	23	99849281	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	8715136	99849281	55421279	668	63006										
NOX1	0	genome.wustl.edu	37	chrX	100105159	100105159	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctgggaattggtgaatattGttgttcgaaagcccttatga	11	6	0	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	100105159	100105159	G	A	SNP	NOX1	ENST00000372966	human	ensembl	69_37n	-1	known	nonsense	c.1114	p.Q372*	0.966	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952	160	0	0	113	25	18.12	-	-	-	A	100105159	G	A	100105159	4	1	712	1	0	0	0	0	0	1	0	0	10628	1386	48	4	600	4	NOX1	23	100105159	Nonsense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	255878	100105159	55165401	669	63007										
BHLHB9	0	genome.wustl.edu	37	chrX	102004543	102004543	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gcctgtgtatgaaattaatgAaaaaaataggcccaaggact							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	102004543	102004543	A	-	DEL	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	frame_shift_del	c.620	p.N209fs	1.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	49	0	0	31	7	18.42	-	-	-	-	102004543	A	-	102004543	7	5	712	1	0	1	0	1	0	0	0	0	1425	246	9	0	622	0	BHLHB9	23	102004543	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1899384	102004543	53266017	670	63008										
RAB40AL	0	genome.wustl.edu	37	chrX	102192925	102192925	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gccacctcaagtccttctccAtggctaagggcctgaatgcc	9	15	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	102192925	102192925	A	G	SNP	RAB40AL	ENST00000218249	human	ensembl	69_37n	1	known	missense	c.679	p.M227V	1.000	pfscan_SOCS_C	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40AL	HGNC	ENSG00000102128	166	0	0	123	23	15.75	-	-	-	G	102192925	A	G	102192925	3	3	712	1	0	0	0	0	1	0	0	0	13023	217	8	5	681	5	RAB40AL	23	102192925	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	188382	102192925	53077635	671	63009										
NRK	0	genome.wustl.edu	37	chrX	105132358	105132358	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ttccacaaaaacattgtgtcCttctatggagcatttttcaa	5	9	2	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	105132358	105132358	C	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	silent	c.324	p.S108	0.985	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	223	0	0	149	35	19.02	-	-	-	A	105132358	C	A	105132358	2	1	712	1	0	0	0	0	0	0	0	1	10728	668	24	4		4	NRK	23	105132358	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	2939433	105132358	50138202	672	63010										
RNF128	0	genome.wustl.edu	37	chrX	105970597	105970597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tctttaacttccccgggaccCgcaatgaggtcatccccatg	8	15	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	105970597	105970597	C	T	SNP	RNF128	ENST00000255499	human	ensembl	69_37n	1	known	missense	c.454	p.R152C	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	20	0	0	13	5	26.32	-	-	-	T	105970597	C	T	105970597	3	4	712	1	0	0	0	0	1	0	0	0	13522	652	23	1	866	1	RNF128	23	105970597	Missense_Mutation	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	838239	105970597	49299963	673	63011										
COL4A5	0	genome.wustl.edu	37	chrX	107865045	107865045	+	Frame_Shift_Del	DEL	A	A	-													0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cttcaaaggtaccaaaggtgAaatgggtatgatgggacctc							TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	107865045	107865045	A	-	DEL	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	frame_shift_del	c.2690	p.M898fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	85	0	0	55	10	15.15	-	-	-	-	107865045	A	-	107865045	7	5	712	1	0	1	0	1	0	0	0	0	3724	246	9	0	2816	0	COL4A5	23	107865045	Frame_Shift_Del	DEL	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1894448	107865045	47405515	674	63012										
STAG2	0	genome.wustl.edu	37	chrX	123196825	123196825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tgagctttttgccgtggcccTtcctcagttattagcaaaag	9	10	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	123196825	123196825	T	C	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.1712	p.L571P	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	126	0	0	156	27	14.75	-	-	-	C	123196825	T	C	123196825	3	2	712	1	0	0	0	0	1	0	0	0	15334	1609	56	5	1774	5	STAG2	23	123196825	Missense_Mutation	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	15331780	123196825	32073735	675	63013										
ODZ1	0	genome.wustl.edu	37	chrX	123517989	123517989	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cctaggctggacttactcgcGacacgtcgcccaagcccatc	9	17	0	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	123517989	123517989	G	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.6792	p.V2264	0.699	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	62	0	0	61	14	18.67	-	-	-	A	123517989	G	A	123517989	2	1	712	1	0	0	0	0	0	0	0	1	10907	1045	37	1		1	ODZ1	23	123517989	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	321164	123517989	31752571	676	63014										
USP26	0	genome.wustl.edu	37	chrX	132159686	132159686	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ccgcatatcatcgtaagtgaAccagatctgtttctcaaagt	7	10	3	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	132159686	132159686	A	G	SNP	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	missense	c.2563	p.F855L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	170	0	0	199	42	17.43	-	-	-	G	132159686	A	G	132159686	3	3	712	1	0	0	0	0	1	0	0	0	17154	43	2	5	181	5	USP26	23	132159686	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	8641697	132159686	23110874	677	63015										
GPR112	0	genome.wustl.edu	37	chrX	135405373	135405373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tttctcaagaatgagagcagCgaggttaaaagcatgatgcg	12	6	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	135405373	135405373	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.507	p.S169	0.005	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	143	0	0	153	23	12.99	-	-	-	T	135405373	C	T	135405373	2	4	712	1	0	0	0	0	0	0	0	1	6679	767	27	1		1	GPR112	23	135405373	Silent	SNP	C	TCGA-D8-A1XQ-01A-11D-A14K-09	3245687	135405373	19865187	678	63016										
BRS3	0	genome.wustl.edu	37	chrX	135570623	135570623	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agaaggatggctgttcggaaGaattggttgtaaggtgctct	15	4	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	135570623	135570623	G	T	SNP	BRS3	ENST00000370648	human	ensembl	69_37n	1	known	missense	c.350	p.R117I	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239	148	0	0	134	28	17.28	-	-	-	T	135570623	G	T	135570623	3	4	712	1	0	0	0	0	1	0	0	0	1530	942	33	2	352	2	BRS3	23	135570623	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	165250	135570623	19699937	679	63017										
HTATSF1	0	genome.wustl.edu	37	chrX	135592335	135592335	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	tggaagatggtttggtggccGtcaaatcactgcccaggcat	13	9	2	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	135592335	135592335	G	C	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1019	p.R340P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	86	0	0	71	44	38.26	-	-	-	C	135592335	G	C	135592335	3	2	712	1	0	0	0	0	1	0	0	0	7487	1145	40	3	1049	3	HTATSF1	23	135592335	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	21712	135592335	19678225	680	63018										
HTATSF1	0	genome.wustl.edu	37	chrX	135593359	135593359	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	agctgctcccaaaaagagtcTgaagaaggcaatcccgtaag	10	10	1	3			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	135593359	135593359	T	C	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	silent	c.1455	p.S485	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	46	0	0	42	8	16	-	-	-	C	135593359	T	C	135593359	2	2	712	1	0	0	0	0	0	0	0	1	7487	1567	55	5		5	HTATSF1	23	135593359	Silent	SNP	T	TCGA-D8-A1XQ-01A-11D-A14K-09	1024	135593359	19677201	681	63019										
FGF13	0	genome.wustl.edu	37	chrX	137715089	137715089	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	ctgctcttggttggggtcccGcttccagatcgggagaactc	13	12	1	2			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	137715089	137715089	G	A	SNP	FGF13	ENST00000370603	human	ensembl	69_37n	-1	known	silent	c.690	p.S230	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	149	0	0	142	52	26.8	-	-	-	A	137715089	G	A	137715089	2	1	712	1	0	0	0	0	0	0	0	1	5888	1078	38	1		1	FGF13	23	137715089	Silent	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	2121730	137715089	17555471	682	63020										
PNMA3	0	genome.wustl.edu	37	chrX	152225668	152225668	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	caagggaaataccaggaaagGgggggccctgggaagtgatt	17	6	0	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	152225668	152225668	G	C	SNP	PNMA3	ENST00000370264	human	ensembl	69_37n	1	known	missense	c.256	p.G86R	0.015	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837	58	0	0	51	9	15	-	-	-	C	152225668	G	C	152225668	3	2	712	1	0	0	0	0	1	0	0	0	12229	1232	43	4	258	4	PNMA3	23	152225668	Missense_Mutation	SNP	G	TCGA-D8-A1XQ-01A-11D-A14K-09	14510579	152225668	3044892	683	63021										
FLNA	0	genome.wustl.edu	37	chrX	153592631	153592631	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	cccgtgggtgctctacctggActtggacccgaagtggggcc	15	13	1	0			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	153592631	153592631	A	G	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	missense	c.2132	p.V711A	0.931	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	36	0	0	55	8	12.7	-	-	-	G	153592631	A	G	153592631	3	3	712	1	0	0	0	0	1	0	0	0	5979	275	10	5	5951	5	FLNA	23	153592631	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	1366963	153592631	1677929	684	63022										
SLC10A3	0	genome.wustl.edu	37	chrX	153717203	153717203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0381791483113069	26	1	0.691847155440194	2.03460376481525	0.390884467131993	0.806485439775549	1	0	gggcagctctgagcatgcttAagggacctgtgccaccaccc	12	14	1	1			TCGA-D8-A1XQ-01A-11D-A14K-09	TCGA-D8-A1XQ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6907fb6b-34d8-4376-961b-f073f0b5f700	241a754b-92a3-4a10-a8ad-ee7e2e29ad19	X	153717203	153717203	A	G	SNP	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	missense	c.77	p.L26S	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	34	0	0	30	4	11.76	-	-	-	G	153717203	A	G	153717203	3	3	712	1	0	0	0	0	1	0	0	0	14464	372	13	5	1360	5	SLC10A3	23	153717203	Missense_Mutation	SNP	A	TCGA-D8-A1XQ-01A-11D-A14K-09	124572	153717203	1553357	685	63023										
DENND2D	0	genome.wustl.edu	37	chr1	111742312	111742312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gcttctttttgagagaaaccAcaagaaggtattcaaagaag	9	6	2	4			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	111742312	111742312	A	G	SNP	DENND2D	ENST00000357640	human	ensembl	69_37n	-1	known	missense	c.176	p.V59A	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777	48	0	0	30	7	18.92	-	-	-	G	111742312	A	G	111742312	3	3	713	1	0	0	0	0	1	0	0	0	4467	159	6	5	1283	5	DENND2D	1	111742312	Missense_Mutation	SNP	A	TCGA-D8-A1XR-01A-11D-A14K-09		111742312	137508309	1	63024										
TPM3	0	genome.wustl.edu	37	chr1	154163748	154163748	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gtccagctcatcctctgtccCtttcagcttcttctgcatgg	7	15	5	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	154163748	154163748	C	A	SNP	TPM3	ENST00000368530	human	ensembl	69_37n	-1	known	missense	c.157	p.G53W	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	230	0	0	168	34	16.83	-	-	-	A	154163748	C	A	154163748	3	1	713	1	0	0	0	0	1	0	0	0	16503	681	24	4	1123	4	TPM3	1	154163748	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09	42421436	154163748	95086873	2	63025										
ETV3L	0	genome.wustl.edu	37	chr1	157069272	157069272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gctcacctgagatccagttgCcggggttggctgggatgccc	15	12	1	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	157069272	157069272	C	T	SNP	ETV3L	ENST00000454449	human	ensembl	69_37n	-1	known	missense	c.44	p.G15D	0.004	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ETV3L	HGNC	ENSG00000253831	44	0	0	40	17	29.82	-	-	-	T	157069272	C	T	157069272	3	4	713	1	0	0	0	0	1	0	0	0	5317	739	26	4	1061	4	ETV3L	1	157069272	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09	2905524	157069272	92181349	3	63026										
DNER	0	genome.wustl.edu	37	chr2	230312186	230312186	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	tgtaccccgtccacatagcaGgtgccgttgttctggcacgg	12	13	1	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	2	230312186	230312186	G	T	SNP	DNER	ENST00000341772	human	ensembl	69_37n	-1	known	silent	c.1332	p.T444	0.893	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957	54	0	0	21	4	16	-	-	-	T	230312186	G	T	230312186	2	4	713	1	0	0	0	0	0	0	0	1	4702	987	35	4		4	DNER	2	230312186	Silent	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09		230312186	12887187	4	63027										
BSN	0	genome.wustl.edu	37	chr3	49694289	49694289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	tgcagcagcagcaagaggaaCgccaggctcaatttgcactg	12	11	1	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	3	49694289	49694289	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.7300	p.R2434C	0.998	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	26	0	0	15	16	51.61	-	-	-	T	49694289	C	T	49694289	3	4	713	1	0	0	0	0	1	0	0	0	1538	536	19	1	7318	1	BSN	3	49694289	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09		49694289	148328141	5	63028										
KIAA1045	0	genome.wustl.edu	37	chr9	34977197	34977197	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gccgccgggcccagcactctTggttttgcaaacggttccca	11	15	1	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	9	34977197	34977197	T	C	SNP	KIAA1045	ENST00000242315	human	ensembl	69_37n	1	known	missense	c.967	p.W323R	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733	50	0	0	21	19	47.5	-	-	-	C	34977197	T	C	34977197	3	2	713	1	0	0	0	0	1	0	0	0	8259	1812	63	5	985	5	KIAA1045	9	34977197	Missense_Mutation	SNP	T	TCGA-D8-A1XR-01A-11D-A14K-09		34977197	106236234	6	63029										
SMC3	0	genome.wustl.edu	37	chr10	112361451	112361451	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	ttaaggagcttcagaagagtAtggagcgctggaaaaatatg	13	4	1	2			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	10	112361451	112361451	A	G	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.2701	p.M901V	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	79	0	0	27	24	47.06	-	-	-	G	112361451	A	G	112361451	3	3	713	1	0	0	0	0	1	0	0	0	14873	449	16	5	2795	5	SMC3	10	112361451	Missense_Mutation	SNP	A	TCGA-D8-A1XR-01A-11D-A14K-09		112361451	23173296	7	63030										
QSER1	0	genome.wustl.edu	37	chr11	32954399	32954399	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	taatcagcaagaggtattgtCttcagttacaaatgagaatt	8	5	3	2			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	11	32954399	32954399	C	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.1208	p.S403F	0.976	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	83	0	0	25	22	46.81	-	-	-	T	32954399	C	T	32954399	3	4	713	1	0	0	0	0	1	0	0	0	12965	913	32	2	1214	2	QSER1	11	32954399	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09		32954399	102052117	8	63031										
CIT	0	genome.wustl.edu	37	chr12	120156107	120156107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	cggggccagcaggctcatggCactgggctggtgctctggcg	18	12	2	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	12	120156107	120156107	C	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.3985	p.A1329T	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	74	0	0	35	30	44.78	-	-	-	T	120156107	C	T	120156107	3	4	713	1	0	0	0	0	1	0	0	0	3468	710	25	4	2166	4	CIT	12	120156107	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09		120156107	13695788	9	63032										
CUL4A	0	genome.wustl.edu	37	chr13	113897392	113897392	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	atcgaggtctgcttccagaaGaatgagcggttcgtcaacct	11	10	2	3			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	13	113897392	113897392	G	A	SNP	CUL4A	ENST00000375440	human	ensembl	69_37n	1	known	silent	c.1146	p.K382	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4A	HGNC	ENSG00000139842	103	0	0	30	26	46.43	-	-	-	A	113897392	G	A	113897392	2	1	713	1	0	0	0	0	0	0	0	1	4088	933	33	2		2	CUL4A	13	113897392	Silent	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09		113897392	1272486	10	63033										
MAP2K3	0	genome.wustl.edu	37	chr17	21206523	21206523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	ggccctggagcatctgcacaGcaagctgtcggtgatccaca	12	13	1	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	21206523	21206523	G	A	SNP	MAP2K3	ENST00000342679	human	ensembl	69_37n	1	known	missense	c.545	p.S182N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152	61	0	0	40	7	14.89	-	-	-	A	21206523	G	A	21206523	3	1	713	1	0	0	0	0	1	0	0	0	9309	971	34	4	571	4	MAP2K3	17	21206523	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09		21206523	59988687	11	63034										
KCNJ12	0	genome.wustl.edu	37	chr17	21319592	21319592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	agccatgaccacccaggcccGcagctcctacctggccaatg	9	18	0	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	21319592	21319592	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	missense	c.938	p.R313H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	104	0	0	77	16	17.2	-	-	-	A	21319592	G	A	21319592	3	1	713	1	0	0	0	0	1	0	0	0	8100	1087	38	1	940	1	KCNJ12	17	21319592	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09	113069	21319592	59875618	12	63035										
MRPL27	0	genome.wustl.edu	37	chr17	48447871	48447871	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gactttccaccgaggtttttGgagctaccacccgacttctt	8	13	1	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	48447871	48447871	G	A	SNP	MRPL27	ENST00000508200	human	ensembl	69_37n	-1	novel	nonsense	c.64	p.Q22*	0.964	pfam_Ribosomal_L27,prints_Ribosomal_L27	pfam_Ribosomal_L27,superfamily_Ribosomal_L27,prints_Ribosomal_L27	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPL27	HGNC	ENSG00000108826	182	1	0.54	49	35	41.67	-	-	-	A	48447871	G	A	48447871	4	1	713	1	0	0	0	0	0	1	0	0	9863	1335	47	4	341	4	MRPL27	17	48447871	Nonsense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09	27128279	48447871	32747339	13	63036										
ZNF714	0	genome.wustl.edu	37	chr19	21299748	21299748	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	aaaaggctccgcaaatgtggTtgagtgtaaggtgtacaaaa	12	5	0	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	21299748	21299748	T	A	SNP	ZNF714	ENST00000291770	human	ensembl	69_37n	1	known	missense	c.278	p.V93D	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352	98	0	0	34	45	56.96	-	-	-	A	21299748	T	A	21299748	3	1	713	1	0	0	0	0	1	0	0	0	18214	1725	60	5	288	5	ZNF714	19	21299748	Missense_Mutation	SNP	T	TCGA-D8-A1XR-01A-11D-A14K-09		21299748	37829235	14	63037										
PEG3	0	genome.wustl.edu	37	chr19	57328905	57328905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	attcatcttcacaaatccccCgccggtgggttgattttttg	8	11	3	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	57328905	57328905	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.905	p.R302Q	0.770	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	43	0	0	19	9	32.14	-	-	-	T	57328905	C	T	57328905	3	4	713	1	0	0	0	0	1	0	0	0	11793	652	23	1	3865	1	PEG3	19	57328905	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09	36029157	57328905	1800078	15	63038										
DSCAM	0	genome.wustl.edu	37	chr21	41741044	41741044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	acctgatacaaaaagtctggCgctgttgctctgcctcgtct	9	12	3	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	21	41741044	41741044	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.637	p.A213T	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	96	0	0	39	11	22	-	-	-	T	41741044	C	T	41741044	3	4	713	1	0	0	0	0	1	0	0	0	4803	768	27	1	5521	1	DSCAM	21	41741044	Missense_Mutation	SNP	C	TCGA-D8-A1XR-01A-11D-A14K-09		41741044	6388851	16	63039										
DIP2A	0	genome.wustl.edu	37	chr21	47965866	47965866	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	ggacaggcctgctgggcttcAtcgggcctgtgagtatgtcc	15	11	1	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	21	47965866	47965866	A	T	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.2389	p.I797F	0.980	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	109	0	0	18	19	51.35	-	-	-	T	47965866	A	T	47965866	3	4	713	1	0	0	0	0	1	0	0	0	4563	217	8	5	2464	5	DIP2A	21	47965866	Missense_Mutation	SNP	A	TCGA-D8-A1XR-01A-11D-A14K-09	6224822	47965866	164029	17	63040										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31867837	31867838	+	Frame_Shift_Ins	INS	-	-	T													0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	tgacacacatacctgtcataINStttttcagaaaggcatgaag							TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	31867837	31867838	-	T	INS	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	frame_shift_ins	c.163_162	p.Y54fs	1.000:1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	119	0	0	50	27	35.06	-	-	-	T	31867838	-	T	31867837	7	5	713	1	0	1	1	0	0	0	0	0	5072	449	16	0	2865	0	EIF4ENIF1	22	31867837	Frame_Shift_Ins	INS	-	TCGA-D8-A1XR-01A-11D-A14K-09		31867837	19436729	18	63041										
FBXO7	0	genome.wustl.edu	37	chr22	32889121	32889121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	taccagatgtatttgggttgGtcgtcctcccattggaactg	11	9	0	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	32889121	32889121	G	C	SNP	FBXO7	ENST00000266087	human	ensembl	69_37n	1	known	missense	c.997	p.V333L	0.009	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO7	HGNC	ENSG00000100225	373	0	0	87	66	43.14	-	-	-	C	32889121	G	C	32889121	3	2	713	1	0	0	0	0	1	0	0	0	5806	1261	44	4	1064	4	FBXO7	22	32889121	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09	1021284	32889121	18415445	19	63042										
FAM19A5	0	genome.wustl.edu	37	chr22	49042480	49042480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	gccagcctcggaggacgatcGcccggcagaccgcccgctgt	14	17	0	1			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	49042480	49042480	G	A	SNP	FAM19A5	ENST00000358295	human	ensembl	69_37n	1	known	missense	c.163	p.A55T	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A5	HGNC	ENSG00000219438	24	0	0	11	8	42.11	-	-	-	A	49042480	G	A	49042480	3	1	713	1	0	0	0	0	1	0	0	0	5577	1087	38	1	285	1	FAM19A5	22	49042480	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09	16153359	49042480	2262086	20	63043										
SH3KBP1	0	genome.wustl.edu	37	chrX	19560229	19560229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	atgacaggggggagggcgccGctgaggacagaggggctggc	22	8	0	3			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	19560229	19560229	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.1706	p.A569V	0.002	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	87	0	0	29	35	54.69	-	-	-	A	19560229	G	A	19560229	3	1	713	1	0	0	0	0	1	0	0	0	14344	1087	38	1	303	1	SH3KBP1	23	19560229	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09		19560229	135710331	21	63044										
PHF16	0	genome.wustl.edu	37	chrX	46913561	46913561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	acctattttcttcctacagtGctctataaaaagctgcatca	4	11	3	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	46913561	46913561	G	A	SNP	PHF16	ENST00000218343	human	ensembl	69_37n	1	known	missense	c.974	p.C325Y	1.000	smart_Znf_PHD	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF16	HGNC	ENSG00000102221	46	0	0	7	7	50	-	-	-	A	46913561	G	A	46913561	3	1	713	1	0	0	0	0	1	0	0	0	11901	1333	46	4	1004	4	PHF16	23	46913561	Missense_Mutation	SNP	G	TCGA-D8-A1XR-01A-11D-A14K-09	27353332	46913561	108356999	22	63045										
P2RY10	0	genome.wustl.edu	37	chrX	78216289	78216289	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.841065505936394	1.22305764411028	0	1.31713900134953	0.333333333333333	0.930327025915261	0	attatctttacccctccggaTttactattacatcagccacc	3	14	2	0			TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	78216289	78216289	T	A	SNP	P2RY10	ENST00000171757	human	ensembl	69_37n	1	known	missense	c.272	p.I91N	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY10	HGNC	ENSG00000078589	124	0	0	42	49	53.85	-	-	-	A	78216289	T	A	78216289	3	1	713	1	0	0	0	0	1	0	0	0	11420	1493	52	5	274	5	P2RY10	23	78216289	Missense_Mutation	SNP	T	TCGA-D8-A1XR-01A-11D-A14K-09	31302728	78216289	77054271	23	63046										
PM20D1	0	genome.wustl.edu	37	chr1	205813220	205813220	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	ggatgctttactcacaaggcGatgggcttcttgaagttagg	13	7	2	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	1	205813220	205813220	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	silent	c.702	p.I234	0.994	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	41	0	0	30	26	46.43	-	-	-	A	205813220	G	A	205813220	2	1	714	1	0	0	0	0	0	0	0	1	12202	1048	37	1		1	PM20D1	1	205813220	Silent	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09		205813220	43437401	1	63047										
THADA	0	genome.wustl.edu	37	chr2	43798926	43798926	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	tgtaataaagaactgaatccActgcatttcttccatggaaa	6	8	1	2			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	43798926	43798926	A	C	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.1984	p.W662G	1.000	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	57	0	0	36	21	36.84	-	-	-	C	43798926	A	C	43798926	3	2	714	1	0	0	0	0	1	0	0	0	15935	159	6	5	3981	5	THADA	2	43798926	Missense_Mutation	SNP	A	TCGA-D8-A1XS-01A-11D-A14K-09		43798926	199400447	2	63048										
POTEF	0	genome.wustl.edu	37	chr2	130832873	130832873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aagacagcccggggggcatcGtcgcccgcaaagccggcctt	14	15	0	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	35	0	0	44	7	13.73	-	-	-	A	130832873	G	A	130832873	2	1	714	1	0	0	0	0	0	0	0	1	12339	1136	40	1		1	POTEF	2	130832873	Silent	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09	87033947	130832873	112366500	3	63049										
RIF1	0	genome.wustl.edu	37	chr2	152320011	152320011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aggcattgtagtcttagaaaAtaacccacctggtttgctta	8	8	1	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	152320011	152320011	A	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.3977	p.N1326S	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	41	0	0	48	16	25	-	-	-	G	152320011	A	G	152320011	3	3	714	1	0	0	0	0	1	0	0	0	13443	101	4	5	4091	5	RIF1	2	152320011	Missense_Mutation	SNP	A	TCGA-D8-A1XS-01A-11D-A14K-09	21487138	152320011	90879362	4	63050										
IGSF10	0	genome.wustl.edu	37	chr3	151163762	151163762	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	tttgtgctctagatctctctGtttgggtttcataagtgatg	10	6	4	2			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	151163762	151163762	G	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.4007	p.T1336K	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	101	1	0.98	55	32	36.36	-	-	-	T	151163762	G	T	151163762	3	4	714	1	0	0	0	0	1	0	0	0	7651	1377	48	4	3924	4	IGSF10	3	151163762	Missense_Mutation	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09		151163762	46858668	5	63051										
P2RY1	0	genome.wustl.edu	37	chr3	152554180	152554180	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aacaaaaccatcacctgttaCgacaccacctcagacgagta	5	14	2	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	152554180	152554180	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	1	known	silent	c.609	p.Y203	0.467	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	111	0	0	60	40	40	-	-	-	T	152554180	C	T	152554180	2	4	714	1	0	0	0	0	0	0	0	1	11419	547	19	1		1	P2RY1	3	152554180	Silent	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09	1390418	152554180	45468250	6	63052										
SLC7A14	0	genome.wustl.edu	37	chr3	170244644	170244644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	ggactccactggtttggtgcGtaggatcctggagtgcattg	15	8	0	0			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	170244644	170244644	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	missense	c.82	p.R28C	1.000	NULL	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	77	0	0	66	44	40	-	-	-	A	170244644	G	A	170244644	3	1	714	1	0	0	0	0	1	0	0	0	14785	1145	40	1	2261	1	SLC7A14	3	170244644	Missense_Mutation	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09	17690464	170244644	27777786	7	63053										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	27	23	46	-	-	-	A	178936091	G	A	178936091	3	1	714	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09	8691447	178936091	19086339	8	63054										
MYLIP	0	genome.wustl.edu	37	chr6	16145378	16145378	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	cctcagaaagcagcatgaacTgcagcagctgcgagggcctc	12	13	1	2			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	6	16145378	16145378	T	A	SNP	MYLIP	ENST00000356840	human	ensembl	69_37n	1	known	missense	c.1078	p.C360S	1.000	NULL	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	MYLIP	HGNC	ENSG00000007944	37	0	0	22	8	26.67	-	-	-	A	16145378	T	A	16145378	3	1	714	1	0	0	0	0	1	0	0	0	10127	1580	55	5	1100	5	MYLIP	6	16145378	Missense_Mutation	SNP	T	TCGA-D8-A1XS-01A-11D-A14K-09		16145378	154969689	9	63055										
PLEKHA2	0	genome.wustl.edu	37	chr8	38775523	38775523	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	atgagaacagcggcaagtttCtgcggaggtacttcattctg	12	8	3	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	8	38775523	38775523	C	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	silent	c.76	p.L26	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	86	0	0	68	39	36.45	-	-	-	T	38775523	C	T	38775523	2	4	714	1	0	0	0	0	0	0	0	1	12130	912	32	2		2	PLEKHA2	8	38775523	Silent	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09		38775523	107588499	10	63056										
ST3GAL1	0	genome.wustl.edu	37	chr8	134477071	134477071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	accacccactccaagtcgatGgtcttgaagggcaccaggat	10	13	1	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	8	134477071	134477071	G	A	SNP	ST3GAL1	ENST00000319914	human	ensembl	69_37n	-1	known	silent	c.633	p.T211	0.596	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513	42	0	0	104	24	18.75	-	-	-	A	134477071	G	A	134477071	2	1	714	1	0	0	0	0	0	0	0	1	15305	1335	47	4		4	ST3GAL1	8	134477071	Silent	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09	95701548	134477071	11886951	11	63057										
COL15A1	0	genome.wustl.edu	37	chr9	101767249	101767249	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aggcactcgccagcatgcctGgggaagtggaggccagtggt	17	10	0	0			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	9	101767249	101767249	G	T	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	1	known	missense	c.1270	p.G424W	0.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	34	0	0	26	4	13.33	-	-	-	T	101767249	G	T	101767249	3	4	714	1	0	0	0	0	1	0	0	0	3702	1348	47	4	1304	4	COL15A1	9	101767249	Missense_Mutation	SNP	G	TCGA-D8-A1XS-01A-11D-A14K-09		101767249	39446182	12	63058										
GOLGA2	0	genome.wustl.edu	37	chr9	131024001	131024001	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	tccatggcctgctgtaactgCtggttagcatcaggggcttc	12	11	1	0			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	9	131024001	131024001	C	T	SNP	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	silent	c.1089	p.Q363	1.000	superfamily_CofA_tubulin-bd	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	46	0	0	24	17	41.46	-	-	-	T	131024001	C	T	131024001	2	4	714	1	0	0	0	0	0	0	0	1	6604	796	28	4		4	GOLGA2	9	131024001	Silent	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09	29256752	131024001	10189430	13	63059										
RRM1	0	genome.wustl.edu	37	chr11	4127418	4127418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	ggcagccaggatcgctgtctCtaacttgcacaaagaaacaa	9	11	1	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	11	4127418	4127418	C	G	SNP	RRM1	ENST00000300738	human	ensembl	69_37n	1	known	missense	c.251	p.S84C	1.000	pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone	pfam_Ribncl_red_lg_C,pfam_Ribncl_Rdtase_lsu_N,pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone,prints_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	39	0	0	20	21	51.22	-	-	-	G	4127418	C	G	4127418	3	3	714	1	0	0	0	0	1	0	0	0	13767	913	32	2	261	2	RRM1	11	4127418	Missense_Mutation	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09		4127418	130879098	14	63060										
BEST1	0	genome.wustl.edu	37	chr11	61725644	61725644	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	actgtggcggtgtacagcttCttcctgacttgtctagttgg	12	9	2	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	11	61725644	61725644	C	T	SNP	BEST1	ENST00000449131	human	ensembl	69_37n	1	known	silent	c.561	p.F187	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	89	0	0	57	16	21.92	-	-	-	T	61725644	C	T	61725644	2	4	714	1	0	0	0	0	0	0	0	1	1408	912	32	2		2	BEST1	11	61725644	Silent	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09	57598226	61725644	73280872	15	63061										
NLRC3	0	genome.wustl.edu	37	chr16	3598192	3598192	+	Frame_Shift_Del	DEL	C	C	-													0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	gtcccagggcctgggcagcgCcggcctggatgaagttccac							TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	3598192	3598192	C	-	DEL	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	frame_shift_del	c.2852	p.G951fs	0.023	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	49	0	0	55	18	24.66	-	-	-	-	3598192	C	-	3598192	7	5	714	1	0	1	0	1	0	0	0	0	10540	739	26	0	507	0	NLRC3	16	3598192	Frame_Shift_Del	DEL	C	TCGA-D8-A1XS-01A-11D-A14K-09		3598192	86756561	16	63062										
CBFB	0	genome.wustl.edu	37	chr16	67116170	67116170	+	Frame_Shift_Del	DEL	G	G	-													0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aggctcggagaaggacacgcGaatttgaagatagagacagg							TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	67116170	67116170	G	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_del	c.454	p.E152fs	1.000	pfam_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	60	0	0	16	17	50	-	-	-	-	67116170	G	-	67116170	7	5	714	1	0	1	0	1	0	0	0	0	2724	1059	37	0	472	0	CBFB	16	67116170	Frame_Shift_Del	DEL	G	TCGA-D8-A1XS-01A-11D-A14K-09	63517978	67116170	23238583	17	63063										
IRF8	0	genome.wustl.edu	37	chr16	85952387	85952387	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	gatgaggtggtccaggtcttCgacaccagccagttcttccg	12	12	2	1			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	85952387	85952387	C	T	SNP	IRF8	ENST00000268638	human	ensembl	69_37n	1	known	silent	c.966	p.F322	0.990	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	24	0	0	3	8	72.73	-	-	-	T	85952387	C	T	85952387	2	4	714	1	0	0	0	0	0	0	0	1	7890	883	31	1		1	IRF8	16	85952387	Silent	SNP	C	TCGA-D8-A1XS-01A-11D-A14K-09	18836217	85952387	4402366	18	63064										
ASCC2	0	genome.wustl.edu	37	chr22	30210708	30210708	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.210526315789474	4	0.15516540792361	2.90909090909091	8	2.4	0.485714285714286	1	0	aagcttctggggtgtggtatTggccccgtccccttgcaaac	12	12	1	0			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	22	30210708	30210708	T	G	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	missense	c.658	p.N220H	0.755	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	65	0	0	36	16	30.77	-	-	-	G	30210708	T	G	30210708	3	3	714	1	0	0	0	0	1	0	0	0	1036	1812	63	5	1671	5	ASCC2	22	30210708	Missense_Mutation	SNP	T	TCGA-D8-A1XS-01A-11D-A14K-09		30210708	21093858	19	63065										
NBPF1	0	genome.wustl.edu	37	chr1	16891340	16891340	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tgatcttcttccccttctttTcttccccttctccttctttt	1	16	6	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	16891340	16891340	T	A	SNP	NBPF1	ENST00000401007	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	35	0	0	30	5	14.29	-	-	-	A	16891340	T	A	16891340	1	1	715	0	1	0	0	0	0	0	0	0	10264	1780	62	5		5	NBPF1	1	16891340	RNA	SNP	T	TCGA-D8-A1XT-01A-11D-A14K-09		16891340	232359281	1	63066										
BCL9	0	genome.wustl.edu	37	chr1	147087614	147087614	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tctttgcagagctgcagaagCtgttttgaagggccaggttg	14	7	1	3			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	147087614	147087614	C	A	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.572	p.A191D	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	127	0	0	94	20	17.54	-	-	-	A	147087614	C	A	147087614	3	1	715	1	0	0	0	0	1	0	0	0	1385	797	28	4	586	4	BCL9	1	147087614	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	130196274	147087614	102163007	2	63067										
FLG	0	genome.wustl.edu	37	chr1	152280540	152280540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tgtctggagccatctcttgaCtgctcctgagcagatccatg	10	12	2	3			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	152280540	152280540	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.6822	p.Q2274	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	402	0	0	240	148	38.14	-	-	-	T	152280540	C	T	152280540	2	4	715	1	0	0	0	0	0	0	0	1	5968	564	20	4		4	FLG	1	152280540	Silent	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	5192926	152280540	96970081	3	63068										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	18	0	0	44	37	45.68	-	-	-	C	154842243	A	C	154842243	2	2	715	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-D8-A1XT-01A-11D-A14K-09	2561703	154842243	94408378	4	63069	460	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	19	0	0	44	37	45.68	-	-	-	T	154842244	A	T	154842244	3	4	715	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-D8-A1XT-01A-11D-A14K-09	1	154842244	94408377	5	63070	460	2								
CCT3	0	genome.wustl.edu	37	chr1	156288708	156288708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	aagaatccagcagcacaatgCgagggttcttgatatagcgc	11	9	1	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	1	156288708	156288708	C	T	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	missense	c.710	p.R237H	0.802	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	89	0	0	46	60	56.07	-	-	-	T	156288708	C	T	156288708	3	4	715	1	0	0	0	0	1	0	0	0	2983	768	27	1	955	1	CCT3	1	156288708	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	1446464	156288708	92961913	6	63071										
CCDC85A	0	genome.wustl.edu	37	chr2	56420362	56420362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cggagcatcttcagaaacacGctcttggggggagcctagag	14	10	3	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	2	56420362	56420362	G	A	SNP	CCDC85A	ENST00000407595	human	ensembl	69_37n	1	known	missense	c.1027	p.A343T	0.018	NULL	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813	40	0	0	38	13	25.49	-	-	-	A	56420362	G	A	56420362	3	1	715	1	0	0	0	0	1	0	0	0	2886	1087	38	1	1033	1	CCDC85A	2	56420362	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		56420362	186779011	7	63072										
AUP1	0	genome.wustl.edu	37	chr2	74754622	74754622	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gtctctctggatgacacccaAtggcacatggggcaaaactt	10	11	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	2	74754622	74754622	A	G	SNP	AUP1	ENST00000377526	human	ensembl	69_37n	-1	known	silent	c.937	p.L313	0.997	pfam_CUE,smart_CUE,pfscan_CUE	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307	77	0	0	49	6	10.91	-	-	-	G	74754622	A	G	74754622	2	3	715	1	0	0	0	0	0	0	0	1	1224	98	4	5		5	AUP1	2	74754622	Silent	SNP	A	TCGA-D8-A1XT-01A-11D-A14K-09	18334260	74754622	168444751	8	63073										
GCC2	0	genome.wustl.edu	37	chr2	109087385	109087385	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ttactgaaaaagatgcccttCtcgaaactgtgaatcgcctc	7	11	1	3			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	2	109087385	109087385	C	G	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.1600	p.L534V	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	9	0	0	8	4	33.33	-	-	-	G	109087385	C	G	109087385	3	3	715	1	0	0	0	0	1	0	0	0	6336	913	32	2	1622	2	GCC2	2	109087385	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	34332763	109087385	134111988	9	63074										
SCN1A	0	genome.wustl.edu	37	chr2	166847987	166847987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	aggaagcttgttttacagttCgctttaaaaggtggcgtctg	12	6	1	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	2	166847987	166847987	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.5798	p.R1933Q	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	83	0	0	53	21	28.38	-	-	-	T	166847987	C	T	166847987	3	4	715	1	0	0	0	0	1	0	0	0	14002	884	31	1	235	1	SCN1A	2	166847987	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	57760602	166847987	76351386	10	63075										
NBEAL1	0	genome.wustl.edu	37	chr2	204037478	204037478	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tggattttacaagattatacTtcggaagagttggaccttaa	9	5	0	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	2	204037478	204037478	T	G	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	silent	c.6138	p.T2046	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	97	0	0	62	17	21.52	-	-	-	G	204037478	T	G	204037478	2	3	715	1	0	0	0	0	0	0	0	1	10260	1596	56	5		5	NBEAL1	2	204037478	Silent	SNP	T	TCGA-D8-A1XT-01A-11D-A14K-09	37189491	204037478	39161895	11	63076										
DVL3	0	genome.wustl.edu	37	chr3	183882690	183882690	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ctggagaccaccagcttcttTgactcagatgaggatgactc	10	11	2	5			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	3	183882690	183882690	T	A	SNP	DVL3	ENST00000313143	human	ensembl	69_37n	1	known	missense	c.570	p.F190L	1.000	pfam_Dishevelled_protein_dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled,prints_Dishevelled_3,prints_Dishevelled_1	-	no_errors	DVL3	HGNC	ENSG00000161202	61	0	0	35	6	14.63	-	-	-	A	183882690	T	A	183882690	3	1	715	1	0	0	0	0	1	0	0	0	4872	1809	63	5	588	5	DVL3	3	183882690	Missense_Mutation	SNP	T	TCGA-D8-A1XT-01A-11D-A14K-09		183882690	14139740	12	63077										
PPEF2	0	genome.wustl.edu	37	chr4	76788502	76788502	+	Frame_Shift_Del	DEL	G	G	-													0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	atgcttcttaaattcactgaGaagatctgaagaatgagcaa							TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	4	76788502	76788502	G	-	DEL	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	frame_shift_del	c.1720	p.L574fs	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain,smart_EF_hand_Ca-bd	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	113	0	0	59	18	23.08	-	-	-	-	76788502	G	-	76788502	7	5	715	1	0	1	0	1	0	0	0	0	12381	942	33	0	557	0	PPEF2	4	76788502	Frame_Shift_Del	DEL	G	TCGA-D8-A1XT-01A-11D-A14K-09		76788502	114365774	13	63078										
TNIP3	0	genome.wustl.edu	37	chr4	122078381	122078381	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ctttccgcggcgtccagtttCgtcttcagctctgctacctg	9	15	3	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	4	122078381	122078381	C	T	SNP	TNIP3	ENST00000057513	human	ensembl	69_37n	-1	known	silent	c.231	p.T77	0.057	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	112	0	0	42	16	27.59	-	-	-	T	122078381	C	T	122078381	2	4	715	1	0	0	0	0	0	0	0	1	16411	871	31	1		1	TNIP3	4	122078381	Silent	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	45289879	122078381	69075895	14	63079										
TRPC3	0	genome.wustl.edu	37	chr4	122853631	122853631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tgcagaaatagtcgtgcggcCgctcgatcctggcacccttc	11	14	0	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	4	122853631	122853631	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	missense	c.782	p.R261Q	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	86	0	0	51	29	36.25	-	-	-	T	122853631	C	T	122853631	3	4	715	1	0	0	0	0	1	0	0	0	16675	652	23	1	2027	1	TRPC3	4	122853631	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	775250	122853631	68300645	15	63080										
PCDH10	0	genome.wustl.edu	37	chr4	134072136	134072136	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ccaccgacccggacgagggcCagaacggtgaggtcgtgtac	15	13	0	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	4	134072136	134072136	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	nonsense	c.841	p.Q281*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	56	0	0	38	8	17.02	-	-	-	T	134072136	C	T	134072136	4	4	715	1	0	0	0	0	0	1	0	0	11580	595	21	4	843	4	PCDH10	4	134072136	Nonsense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	11218505	134072136	57082140	16	63081										
C4orf51	0	genome.wustl.edu	37	chr4	146601433	146601433	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tctcaagagtttgatctgatCagacgcaaggctggagcatc	11	9	3	4			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	4	146601433	146601433	C	A	SNP	C4orf51	ENST00000438731	human	ensembl	69_37n	1	known	silent	c.78	p.I26	0.948	NULL	NULL	-	no_errors	C4orf51	HGNC	ENSG00000237136	177	0	0	100	35	25.93	-	-	-	A	146601433	C	A	146601433	2	1	715	1	0	0	0	0	0	0	0	1	2298	816	29	2		2	C4orf51	4	146601433	Silent	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	12529297	146601433	44552843	17	63082										
EXOC3	0	genome.wustl.edu	37	chr5	465362	465362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tagggaggcagagcagctgcGcttcctgttccggaagctgg	16	10	0	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	5	465362	465362	G	A	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	missense	c.1913	p.R638H	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	126	0	0	70	28	28.57	-	-	-	A	465362	G	A	465362	3	1	715	1	0	0	0	0	1	0	0	0	5339	1087	38	1	1951	1	EXOC3	5	465362	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		465362	180449898	18	63083										
FGFR4	0	genome.wustl.edu	37	chr5	176519685	176519685	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tcagaggtggaggtcctgtaCctgcggaacgtgtcagccga	15	10	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	5	176519685	176519685	C	G	SNP	FGFR4	ENST00000292408	human	ensembl	69_37n	1	known	nonsense	c.957	p.Y319*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR4	HGNC	ENSG00000160867	55	0	0	90	11	10.89	-	-	-	G	176519685	C	G	176519685	4	3	715	1	0	0	0	0	0	1	0	0	5914	518	18	4	983	4	FGFR4	5	176519685	Nonsense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	176054323	176519685	4395575	19	63084										
C6orf170	0	genome.wustl.edu	37	chr6	121631945	121631945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ctctttaggttgcccaggatCcaactggtctaaaatcaatt	7	10	3	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	6	121631945	121631945	C	T	SNP	C6orf170	ENST00000275159	human	ensembl	69_37n	-1	putative	missense	c.544	p.D182N	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	C6orf170	HGNC	ENSG00000146350	107	0	0	48	24	33.33	-	-	-	T	121631945	C	T	121631945	3	4	715	1	0	0	0	0	1	0	0	0	2365	855	30	2	3345	2	C6orf170	6	121631945	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		121631945	49483122	20	63085										
DLX6	0	genome.wustl.edu	37	chr7	96639271	96639271	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tgcctcggccaagggtgtcaGtatgccccccaacagctaca	10	15	1	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	7	96639271	96639271	G	C	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	missense	c.794	p.S265T	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	68	0	0	36	18	32.73	-	-	-	C	96639271	G	C	96639271	3	2	715	1	0	0	0	0	1	0	0	0	4611	1029	36	4	804	4	DLX6	7	96639271	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		96639271	62499392	21	63086										
OR2A7	0	genome.wustl.edu	37	chr7	143956461	143956461	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gcaaaggagatgggcttggcTggatgcaggaggttcaccag	17	7	1	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	7	143956461	143956461	T	C	SNP	OR2A7	ENST00000493325	human	ensembl	69_37n	-1	known	silent	c.261	p.P87	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896	8	0	0	5	9	64.29	-	-	-	C	143956461	T	C	143956461	2	2	715	1	0	0	0	0	0	0	0	1	11055	1567	55	5		5	OR2A7	7	143956461	Silent	SNP	T	TCGA-D8-A1XT-01A-11D-A14K-09	47317190	143956461	15182202	22	63087										
TRPA1	0	genome.wustl.edu	37	chr8	72973917	72973917	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	taacaatatccacgctaccaGaataggacgatatcatcagt	6	10	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	8	72973917	72973917	G	A	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.887	p.S296F	0.013	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	200	0	0	85	28	24.78	-	-	-	A	72973917	G	A	72973917	3	1	715	1	0	0	0	0	1	0	0	0	16673	942	33	2	2556	2	TRPA1	8	72973917	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		72973917	73390105	23	63088										
BRSK2	0	genome.wustl.edu	37	chr11	1477889	1477889	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gcccagctgctgagcacacaCgacccgcctgcggcccagca	11	19	0	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	11	1477889	1477889	C	T	SNP	BRSK2	ENST00000533606	human	ensembl	69_37n	1	putative	nonsense	c.526	p.R176*	0.992	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRSK2	HGNC	ENSG00000174672	15	0	0	15	13	46.43	-	-	-	T	1477889	C	T	1477889	4	4	715	1	0	0	0	0	0	1	0	0	1532	535	19	1	1981	1	BRSK2	11	1477889	Nonsense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		1477889	133528627	24	63089										
OR51F2	0	genome.wustl.edu	37	chr11	4842865	4842865	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tctctatgctttcagccacaGacctgagcttgtccctgtgt	8	13	2	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	11	4842865	4842865	G	A	SNP	OR51F2	ENST00000322110	human	ensembl	69_37n	1	known	missense	c.250	p.D84N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925	123	0	0	60	22	26.83	-	-	-	A	4842865	G	A	4842865	3	1	715	1	0	0	0	0	1	0	0	0	11170	942	33	2	252	2	OR51F2	11	4842865	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	3364976	4842865	130163651	25	63090										
SPTBN2	0	genome.wustl.edu	37	chr11	66463885	66463885	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cagctcagctcggttggcatCaaagaggctgcgggccttgg	15	11	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	11	66463885	66463885	C	G	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.4141	p.D1381H	1.000	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	97	0	0	84	26	23.64	-	-	-	G	66463885	C	G	66463885	3	3	715	1	0	0	0	0	1	0	0	0	15211	826	29	2	3103	2	SPTBN2	11	66463885	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	61621020	66463885	68542631	26	63091										
MAP6	0	genome.wustl.edu	37	chr11	75298416	75298416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tcttgattcttcacggactcGgggaccacaggaccttgatt	10	11	3	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	11	75298416	75298416	G	A	SNP	MAP6	ENST00000304771	human	ensembl	69_37n	-1	known	silent	c.2130	p.P710	0.005	NULL	pfam_STOP/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533	186	1	0.53	134	56	29.47	-	-	-	A	75298416	G	A	75298416	2	1	715	1	0	0	0	0	0	0	0	1	9335	1103	39	1		1	MAP6	11	75298416	Silent	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	8834531	75298416	59708100	27	63092										
OR6T1	0	genome.wustl.edu	37	chr11	123813896	123813896	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tggcaagaatgcaggcatagGaaactgaggtcagagccagt	14	7	1	3			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	11	123813896	123813896	G	T	SNP	OR6T1	ENST00000321252	human	ensembl	69_37n	-1	known	missense	c.650	p.S217Y	0.717	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	94	0	0	58	13	18.31	-	-	-	T	123813896	G	T	123813896	3	4	715	1	0	0	0	0	1	0	0	0	11283	1174	41	2	324	2	OR6T1	11	123813896	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	48515480	123813896	11192620	28	63093										
MARS	0	genome.wustl.edu	37	chr12	57908826	57908826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gccctggaagcggattaaagGcagtgaggctgacaggtagg	17	7	0	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	12	57908826	57908826	G	A	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.2189	p.G730D	0.996	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	111	0	0	69	17	19.77	-	-	-	A	57908826	G	A	57908826	3	1	715	1	0	0	0	0	1	0	0	0	9387	1203	42	4	2255	4	MARS	12	57908826	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		57908826	75943069	29	63094										
SYT1	0	genome.wustl.edu	37	chr12	79679692	79679692	+	Frame_Shift_Del	DEL	G	G	-													0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	agaagggaaaggaaaaaggaGggaagaatgccattaacatg							TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	12	79679692	79679692	G	-	DEL	SYT1	ENST00000261205	human	ensembl	69_37n	1	known	frame_shift_del	c.292	p.K99fs	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	SYT1	HGNC	ENSG00000067715	223	0	0	154	49	23.67	-	-	-	-	79679692	G	-	79679692	7	5	715	1	0	1	0	1	0	0	0	0	15557	1000	35	0	298	0	SYT1	12	79679692	Frame_Shift_Del	DEL	G	TCGA-D8-A1XT-01A-11D-A14K-09	21770866	79679692	54172203	30	63095										
HMGB1	0	genome.wustl.edu	37	chr13	31037698	31037698	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tctgagcacttcttagaaaaCtctgagaagttgactgaagc	9	8	3	5			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	13	31037698	31037698	C	G	SNP	HMGB1	ENST00000339872	human	ensembl	69_37n	-1	known	missense	c.120	p.E40D	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB1	HGNC	ENSG00000189403	226	0	0	148	51	25.63	-	-	-	G	31037698	C	G	31037698	3	3	715	1	0	0	0	0	1	0	0	0	7276	564	20	4	543	4	HMGB1	13	31037698	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		31037698	84132180	31	63096										
ADAMTS7	0	genome.wustl.edu	37	chr15	79068549	79068549	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cgtaggctgcgtgcactgccGctcggcgctctgtacgccca	13	16	1	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	15	79068549	79068549	G	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	silent	c.1687	p.R563	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	39	0	0	35	5	12.5	-	-	-	T	79068549	G	T	79068549	2	4	715	1	0	0	0	0	0	0	0	1	271	1086	38	3		3	ADAMTS7	15	79068549	Silent	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		79068549	23462843	32	63097										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53686660	53686660	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gggatgaaggcctcgcactaCgggagttgtctgtagttcaa	14	8	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	16	53686660	53686660	C	A	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	missense	c.1939	p.V647L	0.032	pfam_DUF3250,smart_C2_Ca-dep	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	106	0	0	61	26	29.89	-	-	-	A	53686660	C	A	53686660	3	1	715	1	0	0	0	0	1	0	0	0	13636	536	19	3	2060	3	RPGRIP1L	16	53686660	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		53686660	36668093	33	63098										
TP53	0	genome.wustl.edu	37	chr17	7577112	7577112	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ccggtctctcccaggacaggCacaaacacgcacctcaaagc	8	17	2	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	17	7577112	7577112	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.826	p.A276P	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	157	0	0	54	41	43.16	-	-	-	G	7577112	C	G	7577112	3	3	715	1	0	0	0	0	1	0	0	0	16477	710	25	4	460	4	TP53	17	7577112	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		7577112	73618098	34	63099										
DSEL	0	genome.wustl.edu	37	chr18	65178250	65178250	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ctaggcgatccatcagagtcCagcagatgttttcaattagt	9	9	2	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	18	65178250	65178250	C	T	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	nonsense	c.3626	p.W1209*	0.809	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	116	0	0	80	31	27.68	-	-	-	T	65178250	C	T	65178250	4	4	715	1	0	0	0	0	0	1	0	0	4810	595	21	4	46	4	DSEL	18	65178250	Nonsense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		65178250	12898998	35	63100										
MBP	0	genome.wustl.edu	37	chr18	74701956	74701956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	ggggttttcatcttgggtccGgccgtgtgacttctggggca	16	9	3	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	18	74701956	74701956	G	A	SNP	MBP	ENST00000355994	human	ensembl	69_37n	-1	known	missense	c.637	p.R213W	0.999	pfam_Myelin_BP,prints_Myelin_BP	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971	374	0	0	167	80	32.39	-	-	-	A	74701956	G	A	74701956	3	1	715	1	0	0	0	0	1	0	0	0	9430	1115	39	1	297	1	MBP	18	74701956	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	9523706	74701956	3375292	36	63101										
ZNF419	0	genome.wustl.edu	37	chr19	58003544	58003544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	atgggaggagcccttcatgcCtgcttgggaagttgtgactt	14	8	1	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	19	58003544	58003544	C	T	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	1	known	missense	c.266	p.P89L	0.009	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	246	0	0	80	45	36	-	-	-	T	58003544	C	T	58003544	3	4	715	1	0	0	0	0	1	0	0	0	17992	681	24	4	280	4	ZNF419	19	58003544	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09		58003544	1125439	37	63102										
YTHDF1	0	genome.wustl.edu	37	chr20	61834555	61834555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cgctctttgttttcattttaGgctgtggttttgcaggcttg	11	7	2	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	20	61834555	61834555	G	T	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	missense	c.737	p.P246H	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	51	0	0	29	7	19.44	-	-	-	T	61834555	G	T	61834555	3	4	715	1	0	0	0	0	1	0	0	0	17595	1000	35	4	950	4	YTHDF1	20	61834555	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		61834555	1190965	38	63103										
CLDN5	0	genome.wustl.edu	37	chr22	19511925	19511925	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	gcgggtctgtcgcacctcctGggtctgccagctcctgccgg	14	16	2	0			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	22	19511925	19511925	G	A	SNP	CLDN5	ENST00000403084	human	ensembl	69_37n	-1	known	nonsense	c.109	p.Q37*	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin5	-	no_errors	CLDN5	HGNC	ENSG00000184113	8	0	0	5	4	44.44	-	-	-	A	19511925	G	A	19511925	4	1	715	1	0	0	0	0	0	1	0	0	3518	1357	47	4	806	4	CLDN5	22	19511925	Nonsense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09		19511925	31792641	39	63104										
APOBEC3C	0	genome.wustl.edu	37	chr22	39413893	39413893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	tcttggagcccttgcccagaCtgtgcaggggaggtggccga	16	11	1	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	22	39413893	39413893	C	G	SNP	APOBEC3C	ENST00000361441	human	ensembl	69_37n	1	known	missense	c.297	p.D99E	0.001	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3C	HGNC	ENSG00000244509	207	0	0	89	16	15.24	-	-	-	G	39413893	C	G	39413893	3	3	715	1	0	0	0	0	1	0	0	0	793	564	20	4	307	4	APOBEC3C	22	39413893	Missense_Mutation	SNP	C	TCGA-D8-A1XT-01A-11D-A14K-09	19901968	39413893	11890673	40	63105										
APOBEC3C	0	genome.wustl.edu	37	chr22	39414291	39414291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cagattttaaatattgttggGaaaactttgtgtacaatgat	8	3	0	2			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	22	39414291	39414291	G	A	SNP	APOBEC3C	ENST00000361441	human	ensembl	69_37n	1	known	missense	c.472	p.E158K	0.056	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3C	HGNC	ENSG00000244509	132	0	0	87	24	21.62	-	-	-	A	39414291	G	A	39414291	3	1	715	1	0	0	0	0	1	0	0	0	793	1175	41	2	486	2	APOBEC3C	22	39414291	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	398	39414291	11890275	41	63106										
PHKA1	0	genome.wustl.edu	37	chrX	71830973	71830973	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	cactttgccatacagctcggTaagaagctctctcactgtag	8	12	2	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	X	71830973	71830973	T	C	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.2431	p.T811A	0.005	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	165	0	0	78	22	21.57	-	-	-	C	71830973	T	C	71830973	3	2	715	1	0	0	0	0	1	0	0	0	11917	1638	57	5	1284	5	PHKA1	23	71830973	Missense_Mutation	SNP	T	TCGA-D8-A1XT-01A-11D-A14K-09		71830973	83439587	42	63107										
RHOXF2	0	genome.wustl.edu	37	chrX	119293091	119293091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.870575775228365	1.04310868245294	2.01170960187354	0.704098360655738	1	1	0	aaaaagatggcggcggcgccGgagttcctggccacctatgg	15	11	0	1			TCGA-D8-A1XT-01A-11D-A14K-09	TCGA-D8-A1XT-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bc13601e-3e03-4d7d-8e6e-5b05ff500ea3	5b149a6b-4032-4d61-89da-1b30733c2977	X	119293091	119293091	G	A	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	1	known	missense	c.250	p.G84R	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	103	0	0	75	32	29.63	-	-	-	A	119293091	G	A	119293091	3	1	715	1	0	0	0	0	1	0	0	0	13432	1117	39	1	1139	1	RHOXF2	23	119293091	Missense_Mutation	SNP	G	TCGA-D8-A1XT-01A-11D-A14K-09	47462118	119293091	35977469	43	63108										
MACF1	0	genome.wustl.edu	37	chr1	39797714	39797714	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ggcatcatagacactgtcacGgggcaaaggctaacaataga	11	9	2	2			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	1	39797714	39797714	G	T	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	silent	c.5565	p.T1855	0.976	pfam_Plectin_repeat,superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	69	0	0	33	4	10.81	-	-	-	T	39797714	G	T	39797714	2	4	716	1	0	0	0	0	0	0	0	1	9211	1103	39	3		3	MACF1	1	39797714	Silent	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		39797714	209452907	1	63109										
FLG2	0	genome.wustl.edu	37	chr1	152329961	152329961	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	tcggtgaccacgcctatgctTctttgaccctgaagctttgc	9	13	1	3			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	1	152329961	152329961	T	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	nonsense	c.301	p.K101*	0.993	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	79	0	0	76	32	29.63	-	-	-	A	152329961	T	A	152329961	4	1	716	1	0	0	0	0	0	1	0	0	5969	1792	62	5	6878	5	FLG2	1	152329961	Nonsense_Mutation	SNP	T	TCGA-D8-A1XU-01A-11D-A14K-09	112532247	152329961	96920660	2	63110										
SPTA1	0	genome.wustl.edu	37	chr1	158590173	158590173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	agggagacacagtgcacaggCtctgacaagttttcttccat	10	10	2	2			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	1	158590173	158590173	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.6204	p.E2068	0.982	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	82	0	0	74	30	28.85	-	-	-	T	158590173	C	T	158590173	2	4	716	1	0	0	0	0	0	0	0	1	15207	796	28	4		4	SPTA1	1	158590173	Silent	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09	6260212	158590173	90660448	3	63111										
POTEF	0	genome.wustl.edu	37	chr2	130832873	130832873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	aagacagcccggggggcatcGtcgcccgcaaagccggcctt	14	15	0	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	44	0	0	36	7	16.28	-	-	-	A	130832873	G	A	130832873	2	1	716	1	0	0	0	0	0	0	0	1	12339	1136	40	1		1	POTEF	2	130832873	Silent	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		130832873	112366500	4	63112										
ADAM23	0	genome.wustl.edu	37	chr2	207431970	207431970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	gtcccattctcgaaaattttCaaagtgcagcattttggagt	8	8	2	0			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	2	207431970	207431970	C	T	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	missense	c.1418	p.S473L	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	126	0	0	87	30	25.64	-	-	-	T	207431970	C	T	207431970	3	4	716	1	0	0	0	0	1	0	0	0	245	838	29	2	1476	2	ADAM23	2	207431970	Missense_Mutation	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09	76599097	207431970	35767403	5	63113										
TTC21A	0	genome.wustl.edu	37	chr3	39174599	39174599	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ccactggagcaaccagaaatGattccctcccagaagcaact	7	14	0	3			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	3	39174599	39174599	G	A	SNP	TTC21A	ENST00000301819	human	ensembl	69_37n	1	known	missense	c.2643	p.M881I	0.998	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	65	0	0	21	33	61.11	-	-	-	A	39174599	G	A	39174599	3	1	716	1	0	0	0	0	1	0	0	0	16784	1290	45	2	2721	2	TTC21A	3	39174599	Missense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		39174599	158847831	6	63114										
HYAL2	0	genome.wustl.edu	37	chr3	50357256	50357256	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	cagggcagcggcctgtgtagCtctcccagttctgcacataa	11	13	2	0			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	3	50357256	50357256	C	A	SNP	HYAL2	ENST00000357750	human	ensembl	69_37n	-1	known	missense	c.665	p.S222I	0.993	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001	44	0	0	16	4	20	-	-	-	A	50357256	C	A	50357256	3	1	716	1	0	0	0	0	1	0	0	0	7518	797	28	4	768	4	HYAL2	3	50357256	Missense_Mutation	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09	11182657	50357256	147665174	7	63115										
PHC3	0	genome.wustl.edu	37	chr3	169847215	169847215	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	agttgaattctgaagtgtgaTtggctgaatttgctgttgct	12	4	1	4			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	3	169847215	169847215	T	C	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	missense	c.1045	p.I349V	0.986	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	257	0	0	158	70	30.7	-	-	-	C	169847215	T	C	169847215	3	2	716	1	0	0	0	0	1	0	0	0	11892	1493	52	5	1974	5	PHC3	3	169847215	Missense_Mutation	SNP	T	TCGA-D8-A1XU-01A-11D-A14K-09	119489959	169847215	28175215	8	63116										
MAP3K13	0	genome.wustl.edu	37	chr3	185190782	185190782	+	Frame_Shift_Del	DEL	G	G	-													0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ggccagacttgttgagatcaGaagggatccccaccacagaa							TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	3	185190782	185190782	G	-	DEL	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	frame_shift_del	c.1663	p.E555fs	1.000	pirsf_MAP3K12_MAP3K13,superfamily_Kinase-like_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	81	0	0	32	26	44.07	-	-	-	-	185190782	G	-	185190782	7	5	716	1	0	1	0	1	0	0	0	0	9318	943	33	0	1701	0	MAP3K13	3	185190782	Frame_Shift_Del	DEL	G	TCGA-D8-A1XU-01A-11D-A14K-09	15343567	185190782	12831648	9	63117										
MAN2B2	0	genome.wustl.edu	37	chr4	6621677	6621677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	gtgctgcaggcgctggggtcCgtggtggcagtggaggagcg	22	8	0	0			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	4	6621677	6621677	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	69_37n	1	known	silent	c.2838	p.S946	0.014	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	29	0	0	3	12	80	-	-	-	T	6621677	C	T	6621677	2	4	716	1	0	0	0	0	0	0	0	1	9288	639	23	1		1	MAN2B2	4	6621677	Silent	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09		6621677	184532599	10	63118										
GALNTL6	0	genome.wustl.edu	37	chr4	173150860	173150860	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	tattcatggacagatggtttGagaagaaaggactggcatga	13	4	1	4			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	4	173150860	173150860	G	A	SNP	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	silent	c.192	p.L64	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	137	0	0	36	31	46.27	-	-	-	A	173150860	G	A	173150860	2	1	716	1	0	0	0	0	0	0	0	1	6275	1281	45	2		2	GALNTL6	4	173150860	Silent	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09	166529183	173150860	18003416	11	63119										
ROS1	0	genome.wustl.edu	37	chr6	117658378	117658378	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	agtgaggtgctattttctccCgtcttataaaccaccactac	6	12	2	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	6	117658378	117658378	C	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	silent	c.5205	p.T1735	0.967	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	150	1	0.66	47	87	64.93	-	-	-	T	117658378	C	T	117658378	2	4	716	1	0	0	0	0	0	0	0	1	13617	639	23	1		1	ROS1	6	117658378	Silent	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09		117658378	53456689	12	63120										
URM1	0	genome.wustl.edu	37	chr9	131151719	131151719	+	Missense_Mutation	SNP	G	G	C													0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ccactccagccccacactgaGgctgctggagtctcccactc							TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	9	131151719	131151719	G	C	SNP	URM1	ENST00000452446	human	ensembl	69_37n	1	known	missense	c.368	p.R123T	0.001	NULL	pfam_Urm1,superfamily_Mopterin_synth/thiamin_S_b	-	no_errors	URM1	HGNC	ENSG00000167118	31	0	0	16	8	32	-	-	-	C	131151719	G	C	131151719	3	2	716	1	0	0	0	0	1	0	0	0	17124	1000	35	4	382	4	URM1	9	131151719	Missense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		131151719	10061712	13	63121	461	2								
URM1	0	genome.wustl.edu	37	chr9	131151720	131151720	+	Missense_Mutation	SNP	G	G	T													0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	cactccagccccacactgagGctgctggagtctcccactcc							TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	9	131151720	131151720	G	T	SNP	URM1	ENST00000452446	human	ensembl	69_37n	1	known	missense	c.369	p.R123S	0.000	NULL	pfam_Urm1,superfamily_Mopterin_synth/thiamin_S_b	-	no_errors	URM1	HGNC	ENSG00000167118	31	0	0	17	8	32	-	-	-	T	131151720	G	T	131151720	3	4	716	1	0	0	0	0	1	0	0	0	17124	1194	42	4	383	4	URM1	9	131151720	Missense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09	1	131151720	10061711	14	63122	461	2								
ST8SIA6	0	genome.wustl.edu	37	chr10	17373535	17373535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	gttttgaacagcatcacagcAggaagcaagtttggctctgc	11	9	2	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	10	17373535	17373535	A	T	SNP	ST8SIA6	ENST00000377602	human	ensembl	69_37n	-1	known	missense	c.394	p.C132S	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488	111	0	0	139	45	24.46	-	-	-	T	17373535	A	T	17373535	3	4	716	1	0	0	0	0	1	0	0	0	15327	188	7	5	818	5	ST8SIA6	10	17373535	Missense_Mutation	SNP	A	TCGA-D8-A1XU-01A-11D-A14K-09		17373535	118161212	15	63123										
SLC2A13	0	genome.wustl.edu	37	chr12	40223928	40223928	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ccccaggctgcctcatttgtAgatgctttattaactggaac	8	11	1	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	12	40223928	40223928	A	G	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	silent	c.1422	p.S474	0.721	superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	94	0	0	66	32	32.65	-	-	-	G	40223928	A	G	40223928	2	3	716	1	0	0	0	0	0	0	0	1	14631	407	15	5		5	SLC2A13	12	40223928	Silent	SNP	A	TCGA-D8-A1XU-01A-11D-A14K-09		40223928	93627967	16	63124										
UNC13C	0	genome.wustl.edu	37	chr15	54590048	54590048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	agctgtatctggggccatacGattgaaaatcaatgtggaga	12	6	2	2			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	15	54590048	54590048	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.4028	p.R1343Q	0.978	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	85	0	0	26	12	31.58	-	-	-	A	54590048	G	A	54590048	3	1	716	1	0	0	0	0	1	0	0	0	17083	1058	37	1	4066	1	UNC13C	15	54590048	Missense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		54590048	47941344	17	63125										
ARHGAP35	0	genome.wustl.edu	37	chr19	47424345	47424345	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	acatactttttcctgtccttCagtcccaaacctgtaaatct	3	13	2	0			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	19	47424345	47424345	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	nonsense	c.2413	p.Q805*	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	163	0	0	94	49	34.27	-	-	-	T	47424345	C	T	47424345	4	4	716	1	0	0	0	0	0	1	0	0	6846	827	29	2	2415	2	ARHGAP35	19	47424345	Nonsense_Mutation	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09		47424345	11704638	18	63126										
SYT3	0	genome.wustl.edu	37	chr19	51132704	51132704	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	tgcagtttgcgttgggccagCtcggccaggggcaccgagaa	16	11	0	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	19	51132704	51132704	C	T	SNP	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	silent	c.1128	p.E376	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	57	0	0	37	26	41.27	-	-	-	T	51132704	C	T	51132704	2	4	716	1	0	0	0	0	0	0	0	1	15567	796	28	4		4	SYT3	19	51132704	Silent	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09	3708359	51132704	7996279	19	63127										
ZNF614	0	genome.wustl.edu	37	chr19	52521732	52521732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	gaattccacagccacatcctCcagggtcagtgattcctgta	8	13	1	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	19	52521732	52521732	C	T	SNP	ZNF614	ENST00000270649	human	ensembl	69_37n	-1	known	missense	c.31	p.E11K	0.631	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556	90	0	0	71	37	34.26	-	-	-	T	52521732	C	T	52521732	3	4	716	1	0	0	0	0	1	0	0	0	18135	864	30	2	1738	2	ZNF614	19	52521732	Missense_Mutation	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09	1389028	52521732	6607251	20	63128										
ZNF749	0	genome.wustl.edu	37	chr19	57956839	57956839	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	aacatcagataattcatactGgaaaaaggccttagtggagt	9	6	2	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	19	57956839	57956839	G	T	SNP	ZNF749	ENST00000334181	human	ensembl	69_37n	1	known	nonsense	c.2323	p.G775*	0.839	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	43	0	0	32	4	11.11	-	-	-	T	57956839	G	T	57956839	4	4	716	1	0	0	0	0	0	1	0	0	18225	1349	47	4	2333	4	ZNF749	19	57956839	Nonsense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09	5435107	57956839	1172144	21	63129										
C20orf112	0	genome.wustl.edu	37	chr20	31041156	31041156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	ggcaggacttgaggtacgtgCggatgcgcttgcgggcccgc	18	11	0	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	20	31041156	31041156	C	T	SNP	C20orf112	ENST00000359676	human	ensembl	69_37n	-1	known	missense	c.716	p.R239H	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183	54	0	0	32	16	33.33	-	-	-	T	31041156	C	T	31041156	3	4	716	1	0	0	0	0	1	0	0	0	2101	768	27	1	610	1	C20orf112	20	31041156	Missense_Mutation	SNP	C	TCGA-D8-A1XU-01A-11D-A14K-09		31041156	31984364	22	63130										
RABL2B	0	genome.wustl.edu	37	chr22	51215160	51215160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.181818181818182	4	0.195385800036882	2.66666666666667	NA	2.66666666666667	0.0285714285714286	0.251737451737452	0	acagggtcagggcgtacgtgGacagctgctgtggctgactg	17	9	1	1			TCGA-D8-A1XU-01A-11D-A14K-09	TCGA-D8-A1XU-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	55c547ee-7cc9-4b7a-aaca-22f2a8c8c3a4	fd7947df-6e44-4e50-9fe7-e16b0ddc3eb5	22	51215160	51215160	G	T	SNP	RABL2B	ENST00000354869	human	ensembl	69_37n	-1	known	missense	c.155	p.S52Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RABL2B	HGNC	ENSG00000079974	138	0	0	52	49	48.51	-	-	-	T	51215160	G	T	51215160	3	4	716	1	0	0	0	0	1	0	0	0	13054	1174	41	2	588	2	RABL2B	22	51215160	Missense_Mutation	SNP	G	TCGA-D8-A1XU-01A-11D-A14K-09		51215160	89406	23	63131										
NCDN	0	genome.wustl.edu	37	chr1	36030851	36030851	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ttcagggaacaccagcatccCgagggttcttcgcagctgcc	11	14	2	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	1	36030851	36030851	C	T	SNP	NCDN	ENST00000356090	human	ensembl	69_37n	1	known	nonsense	c.1777	p.R593*	0.991	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129	84	0	0	57	44	43.56	-	-	-	T	36030851	C	T	36030851	4	4	717	1	0	0	0	0	0	1	0	0	10286	644	23	1	1803	1	NCDN	1	36030851	Nonsense_Mutation	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09		36030851	213219770	1	63132										
CCDC17	0	genome.wustl.edu	37	chr1	46088465	46088465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ccgggttggccttttgcactGgagaataaagttctgcctct	11	10	2	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	1	46088465	46088465	G	A	SNP	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	missense	c.602	p.P201L	0.010	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	17	0	0	12	11	47.83	-	-	-	A	46088465	G	A	46088465	3	1	717	1	0	0	0	0	1	0	0	0	2819	1348	47	4	1206	4	CCDC17	1	46088465	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09	10057614	46088465	203162156	2	63133										
ODF2L	0	genome.wustl.edu	37	chr1	86841953	86841953	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	aagtaagcttttcaatagctCctgtaaaatggtcaagcctt	7	8	2	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	1	86841953	86841953	C	A	SNP	ODF2L	ENST00000459999	human	ensembl	69_37n	-1	putative	nonsense	c.319	p.E107*	0.129	NULL	superfamily_tRNA-bd_arm	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ODF2L	HGNC	ENSG00000122417	223	0	0	100	85	45.95	-	-	-	A	86841953	C	A	86841953	4	1	717	1	0	0	0	0	0	1	0	0	10901	855	30	2	1357	2	ODF2L	1	86841953	Nonsense_Mutation	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09	40753488	86841953	162408668	3	63134										
IGSF8	0	genome.wustl.edu	37	chr1	160062103	160062103	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	gggtagactgtaacaggcccTgagcgggcactgcccgcctg	15	13	0	2			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	1	160062103	160062103	T	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	silent	c.1695	p.S565	0.001	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	52	0	0	73	21	21.88	-	-	-	C	160062103	T	C	160062103	2	2	717	1	0	0	0	0	0	0	0	1	7658	1567	55	5		5	IGSF8	1	160062103	Silent	SNP	T	TCGA-D8-A1XV-01A-11D-A14K-09	73220150	160062103	89188518	4	63135										
PLA2R1	0	genome.wustl.edu	37	chr2	160824180	160824180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	aaactgaacactcttcactaCcccagagtcctggaggagaa	8	12	2	3			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	2	160824180	160824180	C	T	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.2774	p.G925D	0.197	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	126	0	0	73	59	44.7	-	-	-	T	160824180	C	T	160824180	3	4	717	1	0	0	0	0	1	0	0	0	12084	507	18	4	1669	4	PLA2R1	2	160824180	Missense_Mutation	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09		160824180	82375193	5	63136										
CD200R1L	0	genome.wustl.edu	37	chr3	112545931	112545931	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tggccctcccaggggcatgtActcttaaccgtcactgtgcc	10	15	2	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	3	112545931	112545931	A	G	SNP	CD200R1L	ENST00000398214	human	ensembl	69_37n	-1	known	silent	c.588	p.S196	0.050	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1L	HGNC	ENSG00000206531	52	0	0	62	28	31.11	-	-	-	G	112545931	A	G	112545931	2	3	717	1	0	0	0	0	0	0	0	1	3011	388	14	5		5	CD200R1L	3	112545931	Silent	SNP	A	TCGA-D8-A1XV-01A-11D-A14K-09		112545931	85476499	6	63137										
GOLGB1	0	genome.wustl.edu	37	chr3	121416391	121416391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	agctttctctttctctgctcAttttctttcttcagaaggtc	5	11	6	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	3	121416391	121416391	A	G	SNP	GOLGB1	ENST00000489400	human	ensembl	69_37n	-1	novel	missense	c.2576	p.M859T	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	GOLGB1	HGNC	ENSG00000173230	73	0	0	58	17	22.67	-	-	-	G	121416391	A	G	121416391	3	3	717	1	0	0	0	0	1	0	0	0	6614	214	8	5	6855	5	GOLGB1	3	121416391	Missense_Mutation	SNP	A	TCGA-D8-A1XV-01A-11D-A14K-09	8870460	121416391	76606039	7	63138										
REST	0	genome.wustl.edu	37	chr4	57777582	57777582	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	gcacatacacaacagtgagcGagtatcactggaggaaacat	10	9	1	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	4	57777582	57777582	G	T	SNP	REST	ENST00000309042	human	ensembl	69_37n	1	known	nonsense	c.778	p.E260*	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093	63	0	0	56	25	30.86	-	-	-	T	57777582	G	T	57777582	4	4	717	1	0	0	0	0	0	1	0	0	13317	1059	37	3	780	3	REST	4	57777582	Nonsense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		57777582	133376694	8	63139										
HPSE	0	genome.wustl.edu	37	chr4	84231232	84231232	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ctccaccagccttcaggaagCtagaaaaaaaattttattat	5	9	1	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	4	84231232	84231232	C	A	SNP	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	splice_site	c.843-1	e6-1	1.000	-	-	-	no_errors	HPSE	HGNC	ENSG00000173083	96	0	0	74	49	39.84	-	-	-	A	84231232	C	A	84231232	5	1	717	1	0	0	0	0	0	0	1	0	7395	811	28	4	817	4	HPSE	4	84231232	Splice_Site	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09	26453650	84231232	106923044	9	63140										
HOMER1	0	genome.wustl.edu	37	chr5	78671930	78671930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	gagtgtcttcaggttattgcGaaaagcttcttgttcattct	9	7	5	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	5	78671930	78671930	G	A	SNP	HOMER1	ENST00000334082	human	ensembl	69_37n	-1	known	missense	c.967	p.R323C	1.000	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413	150	0	0	125	31	19.87	-	-	-	A	78671930	G	A	78671930	3	1	717	1	0	0	0	0	1	0	0	0	7329	1058	37	1	101	1	HOMER1	5	78671930	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		78671930	102243330	10	63141										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725686	140725686	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tcactctgtacctggtggtgGcggtggccgcggtctcctgc	15	13	3	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	5	140725686	140725686	G	C	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.2086	p.A696P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	105	1	0.94	74	53	41.41	-	-	-	C	140725686	G	C	140725686	3	2	717	1	0	0	0	0	1	0	0	0	11628	1203	42	4	2088	4	PCDHGA3	5	140725686	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09	62053756	140725686	40189574	11	63142										
MGAT4B	0	genome.wustl.edu	37	chr5	179226297	179226297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tccgcaggttggctttctgcCggtcacagtgcttctgtgga	13	11	3	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	5	179226297	179226297	C	T	SNP	MGAT4B	ENST00000337755	human	ensembl	69_37n	-1	known	missense	c.1100	p.R367Q	0.980	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013	83	0	0	72	49	40.5	-	-	-	T	179226297	C	T	179226297	3	4	717	1	0	0	0	0	1	0	0	0	9617	652	23	1	615	1	MGAT4B	5	179226297	Missense_Mutation	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09	38500611	179226297	1688963	12	63143										
FAM126A	0	genome.wustl.edu	37	chr7	22985376	22985376	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ccacaaccaacagcagatgaCgggttatgtgggactgtgac	12	10	0	3			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	7	22985376	22985376	C	T	SNP	FAM126A	ENST00000432176	human	ensembl	69_37n	-1	known	silent	c.1398	p.P466	0.032	NULL	pfam_Hyccin	-	no_errors	FAM126A	HGNC	ENSG00000122591	66	0	0	74	10	11.9	-	-	-	T	22985376	C	T	22985376	2	4	717	1	0	0	0	0	0	0	0	1	5469	523	19	1		1	FAM126A	7	22985376	Silent	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09		22985376	136153287	13	63144										
FBXO24	0	genome.wustl.edu	37	chr7	100187289	100187289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	gtgggaaagccagcaggaacGggggggccaagggcctagga	20	8	0	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	7	100187289	100187289	G	A	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	1	known	missense	c.26	p.R9Q	0.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	50	0	0	18	24	57.14	-	-	-	A	100187289	G	A	100187289	3	1	717	1	0	0	0	0	1	0	0	0	5781	1116	39	1	71	1	FBXO24	7	100187289	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09	77201913	100187289	58951374	14	63145										
DDX6	0	genome.wustl.edu	37	chr11	118626189	118626189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	taccacattcacagcttgtaTatcaatacctcgggtaaaca	5	11	2	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	11	118626189	118626189	T	A	SNP	DDX6	ENST00000264018	human	ensembl	69_37n	-1	known	missense	c.1198	p.I400L	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX6	HGNC	ENSG00000110367	69	0	0	39	26	40	-	-	-	A	118626189	T	A	118626189	3	1	717	1	0	0	0	0	1	0	0	0	4408	1406	49	5	261	5	DDX6	11	118626189	Missense_Mutation	SNP	T	TCGA-D8-A1XV-01A-11D-A14K-09		118626189	16380327	15	63146										
MTMR6	0	genome.wustl.edu	37	chr13	25823617	25823617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	catctgtttgcttatttttgCgttgtttaattttctagaac	6	6	2	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	13	25823617	25823617	C	T	SNP	MTMR6	ENST00000381801	human	ensembl	69_37n	-1	known	missense	c.1619	p.R540H	0.000	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505	179	0	0	132	98	42.61	-	-	-	T	25823617	C	T	25823617	3	4	717	1	0	0	0	0	1	0	0	0	10019	768	27	1	250	1	MTMR6	13	25823617	Missense_Mutation	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09		25823617	89346261	16	63147										
FOXA1	0	genome.wustl.edu	37	chr14	38060754	38060754	+	Frame_Shift_Del	DEL	T	T	-													0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ccttgaagtccagcttatgcTgctgctccgaggaggacatg							TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	14	38060754	38060754	T	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.1235	p.Q412fs	1.000	pfam_Forkhead_box_C	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	79	0	0	81	66	44.59	-	-	-	-	38060754	T	-	38060754	7	5	717	1	0	1	0	1	0	0	0	0	6035	1580	55	0	187	0	FOXA1	14	38060754	Frame_Shift_Del	DEL	T	TCGA-D8-A1XV-01A-11D-A14K-09		38060754	69288786	17	63148										
CLPX	0	genome.wustl.edu	37	chr15	65459107	65459107	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tgatgacacttttcacacttGacaaaacgggtggatgctgt	10	8	1	3			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	15	65459107	65459107	G	C	SNP	CLPX	ENST00000300107	human	ensembl	69_37n	-1	known	silent	c.375	p.V125	1.000	NULL	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	152	0	0	88	73	45.34	-	-	-	C	65459107	G	C	65459107	2	2	717	1	0	0	0	0	0	0	0	1	3586	1277	45	2		2	CLPX	15	65459107	Silent	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		65459107	37072285	18	63149										
ZNF689	0	genome.wustl.edu	37	chr16	30616444	30616444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	gggagaggttcttgcgctggGagaaacgtttgccacactgg	16	8	1	2			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	16	30616444	30616444	G	A	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	missense	c.644	p.S215F	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	87	0	0	38	29	43.28	-	-	-	A	30616444	G	A	30616444	3	1	717	1	0	0	0	0	1	0	0	0	18190	1174	41	2	862	2	ZNF689	16	30616444	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		30616444	59738309	19	63150										
PTRF	0	genome.wustl.edu	37	chr17	40575012	40575012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	cttctgagccggcccccgacGgctcctccgctgcctgagcc	11	20	1	2			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	17	40575012	40575012	G	A	SNP	PTRF	ENST00000357037	human	ensembl	69_37n	-1	known	missense	c.104	p.P35L	1.000	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469	16	0	0	12	12	50	-	-	-	A	40575012	G	A	40575012	3	1	717	1	0	0	0	0	1	0	0	0	12898	1116	39	1	1076	1	PTRF	17	40575012	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		40575012	40620198	20	63151										
KIF18B	0	genome.wustl.edu	37	chr17	43011380	43011380	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ggaggggctgatggcagcgaTcatcactgtgcggcagttgc	17	9	2	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	17	43011380	43011380	T	A	SNP	KIF18B	ENST00000339151	human	ensembl	69_37n	-1	known	missense	c.973	p.I325F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185	131	0	0	94	90	48.91	-	-	-	A	43011380	T	A	43011380	3	1	717	1	0	0	0	0	1	0	0	0	8333	1435	50	5	1633	5	KIF18B	17	43011380	Missense_Mutation	SNP	T	TCGA-D8-A1XV-01A-11D-A14K-09	2436368	43011380	38183830	21	63152										
PSMA8	0	genome.wustl.edu	37	chr18	23713974	23713974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	atcactgtcttctccccagaCggacacctttttcaagttga	6	13	4	2			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	18	23713974	23713974	C	T	SNP	PSMA8	ENST00000308268	human	ensembl	69_37n	1	known	silent	c.45	p.D15	0.797	pfam_Proteasome_asu_N,smart_Proteasome_asu_N	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611	52	0	0	34	31	47.69	-	-	-	T	23713974	C	T	23713974	2	4	717	1	0	0	0	0	0	0	0	1	12753	535	19	1		1	PSMA8	18	23713974	Silent	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09		23713974	54363274	22	63153										
INO80C	0	genome.wustl.edu	37	chr18	33048579	33048579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tctccctttctggggctcagGgaacgatgctcgtggccttc	12	13	3	0			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	18	33048579	33048579	G	A	SNP	INO80C	ENST00000441607	human	ensembl	69_37n	-1	known	missense	c.683	p.P228L	1.000	NULL	pfam_YL1_C	-	no_errors	INO80C	HGNC	ENSG00000153391	54	0	0	44	26	37.14	-	-	-	A	33048579	G	A	33048579	3	1	717	1	0	0	0	0	1	0	0	0	7802	1232	43	4	7	4	INO80C	18	33048579	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09	9334605	33048579	45028669	23	63154										
ATP13A1	0	genome.wustl.edu	37	chr19	19767522	19767522	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ggcctcgtctacgatgcagcGgcctcgcagcagaagcacgt	13	14	1	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	19	19767522	19767522	G	C	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	missense	c.1030	p.R344G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	57	0	0	38	24	38.71	-	-	-	C	19767522	G	C	19767522	3	2	717	1	0	0	0	0	1	0	0	0	1127	1116	39	3	2664	3	ATP13A1	19	19767522	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		19767522	39361461	24	63155										
FFAR3	0	genome.wustl.edu	37	chr19	35849945	35849945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	cgccgcccggtggccgtggaCgtgctcctgctcaacctgac	13	17	1	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	19	35849945	35849945	C	T	SNP	FFAR3	ENST00000327809	human	ensembl	69_37n	1	known	silent	c.153	p.D51	0.720	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept	-	no_errors	FFAR3	HGNC	ENSG00000185897	194	0	0	184	102	35.66	-	-	-	T	35849945	C	T	35849945	2	4	717	1	0	0	0	0	0	0	0	1	5875	535	19	1		1	FFAR3	19	35849945	Silent	SNP	C	TCGA-D8-A1XV-01A-11D-A14K-09	16082423	35849945	23279038	25	63156										
CEACAM16	0	genome.wustl.edu	37	chr19	45209123	45209123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	tatctggatctgcctcagtcGtggtcaagctctctggtgag	12	10	5	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	19	45209123	45209123	G	A	SNP	CEACAM16	ENST00000405314	human	ensembl	69_37n	1	known	missense	c.925	p.V309M	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM16	HGNC	ENSG00000213892	95	0	0	85	57	40.14	-	-	-	A	45209123	G	A	45209123	3	1	717	1	0	0	0	0	1	0	0	0	3217	1145	40	1	939	1	CEACAM16	19	45209123	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09	9359178	45209123	13919860	26	63157										
TNFRSF6B	0	genome.wustl.edu	37	chr20	62328257	62328257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.408579465541491	2.45147679324895	0	1	1	0	ggacgcagagacaggggagcGgctggtgtgcgcccagtgcc	19	11	0	1			TCGA-D8-A1XV-01A-11D-A14K-09	TCGA-D8-A1XV-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a76adfd1-8c89-4c13-b570-5ccc47043a70	679a76a2-1e0a-4289-a8e2-b460b9da28af	20	62328257	62328257	G	A	SNP	TNFRSF6B	ENST00000369996	human	ensembl	69_37n	1	known	missense	c.137	p.R46Q	0.522	smart_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF6B	HGNC	ENSG00000243509	19	0	0	4	5	55.56	-	-	-	A	62328257	G	A	62328257	3	1	717	1	0	0	0	0	1	0	0	0	16393	1116	39	1	139	1	TNFRSF6B	20	62328257	Missense_Mutation	SNP	G	TCGA-D8-A1XV-01A-11D-A14K-09		62328257	697263	27	63158										
PADI1	0	genome.wustl.edu	37	chr1	17548919	17548919	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gctagacactgatgcagacaTggtcgtatctgtgggcacag	13	9	1	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	17548919	17548919	T	A	SNP	PADI1	ENST00000375471	human	ensembl	69_37n	1	known	missense	c.227	p.M76K	0.034	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623	71	0	0	40	14	25.93	-	-	-	A	17548919	T	A	17548919	3	1	718	1	0	0	0	0	1	0	0	0	11450	1464	51	5	233	5	PADI1	1	17548919	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09		17548919	231701702	1	63159										
FNDC7	0	genome.wustl.edu	37	chr1	109256138	109256138	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aactttccttttcaggttgcTtcagcaaaatcaggtacaat	6	9	3	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	109256138	109256138	T	G	SNP	FNDC7	ENST00000271311	human	ensembl	69_37n	1	known	silent	c.72	p.A24	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107	386	0	0	503	69	12.06	-	-	-	G	109256138	T	G	109256138	2	3	718	1	0	0	0	0	0	0	0	1	6019	1596	56	5		5	FNDC7	1	109256138	Silent	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	91707219	109256138	139994483	2	63160										
SOAT1	0	genome.wustl.edu	37	chr1	179308636	179308636	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tttattgccctcctcattctCtttatcctcagcacacttgt	3	14	3	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	179308636	179308636	C	T	SNP	SOAT1	ENST00000367619	human	ensembl	69_37n	1	known	silent	c.453	p.L151	1.000	NULL	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	247	0	0	198	57	22.35	-	-	-	T	179308636	C	T	179308636	2	4	718	1	0	0	0	0	0	0	0	1	14999	900	32	2		2	SOAT1	1	179308636	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	70052498	179308636	69941985	3	63161										
USH2A	0	genome.wustl.edu	37	chr1	215847722	215847722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acccccttggctgttgctggCagttactgtgtagctatact	10	11	0	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	215847722	215847722	C	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13531	p.A4511S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	109	0	0	82	34	29.06	-	-	-	A	215847722	C	A	215847722	3	1	718	1	0	0	0	0	1	0	0	0	17133	710	25	4	2117	4	USH2A	1	215847722	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	36539086	215847722	33402899	4	63162										
TRIM67	0	genome.wustl.edu	37	chr1	231335936	231335936	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	actgcacattgaagctgcgtCagtccaccggactgatggag	12	11	1	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	231335936	231335936	C	T	SNP	TRIM67	ENST00000366652	human	ensembl	69_37n	1	known	nonsense	c.1306	p.Q436*	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283	78	0	0	89	20	18.35	-	-	-	T	231335936	C	T	231335936	4	4	718	1	0	0	0	0	0	1	0	0	16636	827	29	2	1320	2	TRIM67	1	231335936	Nonsense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	15488214	231335936	17914685	5	63163										
OR2T1	0	genome.wustl.edu	37	chr1	248570049	248570049	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acgagacagtgatgtatgtgTgctgtgttttgatgctgctg	14	5	0	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	248570049	248570049	T	A	SNP	OR2T1	ENST00000366474	human	ensembl	69_37n	1	known	missense	c.754	p.C252S	0.964	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	421	0	0	276	153	35.58	-	-	-	A	248570049	T	A	248570049	3	1	718	1	0	0	0	0	1	0	0	0	11089	1696	59	5	756	5	OR2T1	1	248570049	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	17234113	248570049	680572	6	63164										
OR2T29	0	genome.wustl.edu	37	chr1	248722668	248722668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggacagcatttccagacaacGccttcaggaaaaccacaaag	8	12	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	248722668	248722668	G	A	SNP	OR2T29	ENST00000328570	human	ensembl	69_37n	-1	known	missense	c.125	p.A42V	0.001	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T29	HGNC	ENSG00000182783	207	0	0	229	30	11.54	-	-	-	A	248722668	G	A	248722668	3	1	718	1	0	0	0	0	1	0	0	0	11095	1087	38	1	826	1	OR2T29	1	248722668	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	152619	248722668	527953	7	63165										
C2orf18	0	genome.wustl.edu	37	chr2	26998432	26998432	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ttcctgggccggaggctggtGctgagccagtggctgggcat	18	10	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	26998432	26998432	G	A	SNP	C2orf18	ENST00000344420	human	ensembl	69_37n	1	known	silent	c.423	p.V141	0.011	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_UAA,pirsf_UCP036436	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436	-	no_errors	C2orf18	HGNC	ENSG00000213699	80	0	0	21	37	62.71	-	-	-	A	26998432	G	A	26998432	2	1	718	1	0	0	0	0	0	0	0	1	2178	1306	46	4		4	C2orf18	2	26998432	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		26998432	216200941	8	63166										
IMMT	0	genome.wustl.edu	37	chr2	86400803	86400803	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	agctggagtatctcccttttGtttttggagttgtgaggcag	13	6	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	86400803	86400803	G	C	SNP	IMMT	ENST00000410111	human	ensembl	69_37n	-1	known	missense	c.391	p.Q131E	0.417	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305	465	0	0	265	91	25.49	-	-	-	C	86400803	G	C	86400803	3	2	718	1	0	0	0	0	1	0	0	0	7772	1386	48	4	1933	4	IMMT	2	86400803	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	59402371	86400803	156798570	9	63167										
CCDC74B	0	genome.wustl.edu	37	chr2	130900856	130900856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tctcacctttcttctgtgatGtctgattcattatgagcttg	7	9	5	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	130900856	130900856	G	A	SNP	CCDC74B	ENST00000310463	human	ensembl	69_37n	-1	known	missense	c.281	p.T94I	0.830	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076	218	0	0	120	32	21.05	-	-	-	A	130900856	G	A	130900856	3	1	718	1	0	0	0	0	1	0	0	0	2875	1377	48	4	889	4	CCDC74B	2	130900856	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	44500053	130900856	112298517	10	63168										
CASP8	0	genome.wustl.edu	37	chr2	202141566	202141566	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ccagactttggacaaagtttAccaaatgaaaagcaaacctc	6	10	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	202141566	202141566	A	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.854	p.Y285F	1.000	superfamily_DEATH-like,smart_Pept_C14_p45_core	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	135	0	0	45	59	56.73	-	-	-	T	202141566	A	T	202141566	3	4	718	1	0	0	0	0	1	0	0	0	2702	391	14	5	980	5	CASP8	2	202141566	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	71240710	202141566	41057807	11	63169										
NBEAL1	0	genome.wustl.edu	37	chr2	203992635	203992635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acaaagtattatggggtacaTagctgctactaatgaagaag	10	5	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	203992635	203992635	T	C	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	missense	c.3293	p.I1098T	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	91	0	0	61	35	36.46	-	-	-	C	203992635	T	C	203992635	3	2	718	1	0	0	0	0	1	0	0	0	10260	1406	49	5	3379	5	NBEAL1	2	203992635	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	1851069	203992635	39206738	12	63170										
SH3BP4	0	genome.wustl.edu	37	chr2	235950855	235950855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cacagtgggtctctacggccCtaaacacatccacccatcct	6	17	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	235950855	235950855	C	G	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.1442	p.P481R	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	47	0	0	28	15	34.88	-	-	-	G	235950855	C	G	235950855	3	3	718	1	0	0	0	0	1	0	0	0	14334	681	24	4	1448	4	SH3BP4	2	235950855	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	31958220	235950855	7248518	13	63171										
ATP2B2	0	genome.wustl.edu	37	chr3	10387191	10387191	+	Missense_Mutation	SNP	G	G	T													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cacatcactgccttgacgatGctgctgaaattgtcgtctgt							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	10387191	10387191	G	T	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.2580	p.S860R	1.000	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	227	0	0	94	45	32.37	-	-	-	T	10387191	G	T	10387191	3	4	718	1	0	0	0	0	1	0	0	0	1144	1310	46	4	1175	4	ATP2B2	3	10387191	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		10387191	187635239	14	63172	462	2								
ATP2B2	0	genome.wustl.edu	37	chr3	10387192	10387192	+	Missense_Mutation	SNP	C	C	G													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acatcactgccttgacgatgCtgctgaaattgtcgtctgtc							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	10387192	10387192	C	G	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.2579	p.S860T	1.000	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	227	0	0	92	45	32.61	-	-	-	G	10387192	C	G	10387192	3	3	718	1	0	0	0	0	1	0	0	0	1144	797	28	4	1176	4	ATP2B2	3	10387192	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	1	10387192	187635238	15	63173	462	2								
ZBTB11	0	genome.wustl.edu	37	chr3	101370349	101370349	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tccagcataattttgcaaggCacatagtctctgtggaattt	8	8	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	101370349	101370349	C	T	SNP	ZBTB11	ENST00000312938	human	ensembl	69_37n	-1	known	silent	c.2823	p.V941	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422	131	0	0	50	9	15.25	-	-	-	T	101370349	C	T	101370349	2	4	718	1	0	0	0	0	0	0	0	1	17620	697	25	4		4	ZBTB11	3	101370349	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	90983157	101370349	96652081	16	63174										
QTRTD1	0	genome.wustl.edu	37	chr3	113785093	113785093	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	agagcagaacatcatgaagtCttgacagaatataaagaagg	10	5	2	6			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	113785093	113785093	C	G	SNP	QTRTD1	ENST00000281273	human	ensembl	69_37n	1	known	silent	c.219	p.V73	1.000	superfamily_tRNA_ribo_trans	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_tRNA_ribo_trans	-	no_errors	QTRTD1	HGNC	ENSG00000151576	257	0	0	126	56	30.77	-	-	-	G	113785093	C	G	113785093	2	3	718	1	0	0	0	0	0	0	0	1	12969	900	32	2		2	QTRTD1	3	113785093	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	12414744	113785093	84237337	17	63175										
IL1RAP	0	genome.wustl.edu	37	chr3	190321988	190321988	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aagatgagccagctcgcatcAagtgcccactctttgaacac	8	13	2	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	190321988	190321988	A	T	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	nonsense	c.136	p.K46*	1.000	smart_Ig_sub,prints_IL1_rcpt_I/II	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	116	1	0.85	86	39	31.2	-	-	-	T	190321988	A	T	190321988	4	4	718	1	0	0	0	0	0	1	0	0	7714	131	5	5	142	5	IL1RAP	3	190321988	Nonsense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	76536895	190321988	7700442	18	63176										
LNX1	0	genome.wustl.edu	37	chr4	54374205	54374205	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gggctgattgctggctgcccGtcctctgccgaggacacgta	14	13	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	54374205	54374205	G	A	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	silent	c.570	p.D190	0.250	NULL	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	32	0	0	19	16	45.71	-	-	-	A	54374205	G	A	54374205	2	1	718	1	0	0	0	0	0	0	0	1	8921	1136	40	1		1	LNX1	4	54374205	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		54374205	136780071	19	63177										
HNRNPD	0	genome.wustl.edu	37	chr4	83278494	83278495	+	Frame_Shift_Del	DEL	TT	TT	-													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gaccaacattgtggtatttcTtttccattatcttcttcact							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	83278494	83278495	TT	-	DEL	HNRNPD	ENST00000313899	human	ensembl	69_37n	-1	known	frame_shift_del	c.725_724	p.K242fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	287	0	0	97	88	47.57	-	-	-	-	83278495	TT	-	83278494	7	5	718	1	0	1	0	1	0	0	0	0	7315	1609	56	0	358	0	HNRNPD	4	83278494	Frame_Shift_Del	DEL	TT	TCGA-D8-A1XW-01A-11D-A14K-09	28904289	83278494	107875782	20	63178	463	3								
HNRNPD	0	genome.wustl.edu	37	chr4	83278498	83278498	+	Nonsense_Mutation	SNP	C	C	A													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aacattgtggtatttcttttCcattatcttcttcactggtt							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	83278498	83278498	C	A	SNP	HNRNPD	ENST00000313899	human	ensembl	69_37n	-1	known	nonsense	c.721	p.E241*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	279	1	0.36	72	99	57.89	-	-	-	A	83278498	C	A	83278498	4	1	718	1	0	0	0	0	0	1	0	0	7315	864	30	2	362	2	HNRNPD	4	83278498	Nonsense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	4	83278498	107875778	21	63179	463	3								
HNRNPD	0	genome.wustl.edu	37	chr4	83278499	83278499	+	Nonsense_Mutation	SNP	C	C	A													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acattgtggtatttcttttcCattatcttcttcactggttc							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	83278499	83278499	C	A	SNP	HNRNPD	ENST00000514671	human	ensembl	69_37n	-1	known	nonsense	c.430	p.G144*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HNRNPD	HGNC	ENSG00000138668	276	0	0	73	96	56.14	-	-	-	A	83278499	C	A	83278499	4	1	718	1	0	0	0	0	0	1	0	0	7315	594	21	4	363	4	HNRNPD	4	83278499	Nonsense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	1	83278499	107875777	22	63180	463	3								
FSTL5	0	genome.wustl.edu	37	chr4	162307095	162307095	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cttctgccttgagtggttccTtgagactctttatcatcttg	8	10	4	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	162307095	162307095	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.2348	p.K783R	1.000	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	179	0	0	102	33	24.44	-	-	-	C	162307095	T	C	162307095	3	2	718	1	0	0	0	0	1	0	0	0	6129	1609	56	5	199	5	FSTL5	4	162307095	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	79028596	162307095	28847181	23	63181										
SLC6A3	0	genome.wustl.edu	37	chr5	1406352	1406352	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	agcacagccgccagtacaggCtgggccgctgcccggtcatc	13	16	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	1406352	1406352	C	G	SNP	SLC6A3	ENST00000270349	human	ensembl	69_37n	-1	known	missense	c.1550	p.S517T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	10	0	0	6	14	70	-	-	-	G	1406352	C	G	1406352	3	3	718	1	0	0	0	0	1	0	0	0	14774	797	28	4	328	4	SLC6A3	5	1406352	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09		1406352	179508908	24	63182										
PCDHB16	0	genome.wustl.edu	37	chr5	140564371	140564371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aagcggcaccgggaccctgtCccagagctaccaatacgagg	12	14	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	140564371	140564371	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	1	known	missense	c.2237	p.S746F	0.953	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	67	0	0	32	38	54.29	-	-	-	T	140564371	C	T	140564371	3	4	718	1	0	0	0	0	1	0	0	0	11614	855	30	2	2239	2	PCDHB16	5	140564371	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	139158019	140564371	40350889	25	63183										
DIAPH1	0	genome.wustl.edu	37	chr5	140953199	140953199	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acccattccgggtggaggtgGaggaatgccagggcctccgg	17	11	0	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	140953199	140953199	G	C	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	missense	c.2218	p.P740A	1.000	pfam_Formin_homology_1,superfamily_FH2_actin-bd	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	58	0	0	40	8	16.67	-	-	-	C	140953199	G	C	140953199	3	2	718	1	0	0	0	0	1	0	0	0	4554	1174	41	2	1652	2	DIAPH1	5	140953199	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	388828	140953199	39962061	26	63184										
FLT4	0	genome.wustl.edu	37	chr5	180046347	180046347	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tccgacatcagcgcgcggtgCtcgctggccgtggcgccctc	14	17	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	180046347	180046347	C	T	SNP	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	silent	c.2667	p.E889	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	22	0	0	0	5	100	-	-	-	T	180046347	C	T	180046347	2	4	718	1	0	0	0	0	0	0	0	1	5990	796	28	4		4	FLT4	5	180046347	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	39093148	180046347	868913	27	63185										
TRIM52	0	genome.wustl.edu	37	chr5	180687133	180687133	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagggcttcctggtgtttaaAgcacatgccctgatcattac	9	11	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	180687133	180687133	A	C	SNP	TRIM52	ENST00000327767	human	ensembl	69_37n	-1	known	missense	c.682	p.F228V	0.002	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM52	HGNC	ENSG00000183718	82	0	0	18	15	45.45	-	-	-	C	180687133	A	C	180687133	3	2	718	1	0	0	0	0	1	0	0	0	16623	72	3	5	219	5	TRIM52	5	180687133	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	640786	180687133	228127	28	63186										
HIST1H3I	0	genome.wustl.edu	37	chr6	27840018	27840018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggccggagcgctcttgcgagCcgccttggtggccagctgct	16	14	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	27840018	27840018	C	G	SNP	HIST1H3I	ENST00000328488	human	ensembl	69_37n	-1	known	missense	c.76	p.A26P	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3I	HGNC	ENSG00000182572	28	0	0	25	6	18.75	-	-	-	G	27840018	C	G	27840018	3	3	718	1	0	0	0	0	1	0	0	0	7214	739	26	4	338	4	HIST1H3I	6	27840018	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09		27840018	143275049	29	63187										
GPR126	0	genome.wustl.edu	37	chr6	142726951	142726951	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	agtttactttcttcaacaaaActggacttttccaggtaagc	6	9	2	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	142726951	142726951	A	G	SNP	GPR126	ENST00000367609	human	ensembl	69_37n	1	known	missense	c.2254	p.T752A	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_CUB,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Pentaxin,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	114	0	0	32	57	64.04	-	-	-	G	142726951	A	G	142726951	3	3	718	1	0	0	0	0	1	0	0	0	6690	43	2	5	2312	5	GPR126	6	142726951	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	114886933	142726951	28388116	30	63188										
SDK1	0	genome.wustl.edu	37	chr7	4285355	4285355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cctgcactactcagacgaggAcatctgcaacaagtacaacg	8	13	2	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	4285355	4285355	A	G	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.6299	p.D2100G	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	57	0	0	14	16	53.33	-	-	-	G	4285355	A	G	4285355	3	3	718	1	0	0	0	0	1	0	0	0	14056	275	10	5	6473	5	SDK1	7	4285355	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09		4285355	154853308	31	63189										
AMPH	0	genome.wustl.edu	37	chr7	38502653	38502653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggacttgctgtcgggctcggGaggggtgaaggctcctcagg	19	9	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	38502653	38502653	G	T	SNP	AMPH	ENST00000441628	human	ensembl	69_37n	-1	novel	missense	c.61	p.P21T	0.004	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin,prints_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	AMPH	HGNC	ENSG00000078053	213	0	0	195	35	15.22	-	-	-	T	38502653	G	T	38502653	3	4	718	1	0	0	0	0	1	0	0	0	588	1161	41	2	1325	2	AMPH	7	38502653	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	34217298	38502653	120636010	32	63190										
ASL	0	genome.wustl.edu	37	chr7	65552371	65552371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggaccgagagctgctccgagCaggtgagacgtcctgcccct	14	14	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	65552371	65552371	C	T	SNP	ASL	ENST00000304874	human	ensembl	69_37n	1	known	missense	c.653	p.A218V	0.997	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Argininosuccinate_lyase	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522	35	0	0	21	10	32.26	-	-	-	T	65552371	C	T	65552371	3	4	718	1	0	0	0	0	1	0	0	0	1048	710	25	4	683	4	ASL	7	65552371	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	27049718	65552371	93586292	33	63191										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37720609	37720609	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tcagctgcgcatatgcaaatGcagggtccgaggggctgtat	14	9	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	37720609	37720609	G	C	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.3656	p.A1219G	0.970	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	135	0	0	94	18	16.07	-	-	-	C	37720609	G	C	37720609	3	2	718	1	0	0	0	0	1	0	0	0	12976	1319	46	4	199	4	RAB11FIP1	8	37720609	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		37720609	108643413	34	63192										
ARFGEF1	0	genome.wustl.edu	37	chr8	68139523	68139523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tgtgctatacaccgtacaacCatatctcgaattgttggaga	8	9	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	68139523	68139523	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.3765	p.M1255I	1.000	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	108	0	0	95	15	13.64	-	-	-	T	68139523	C	T	68139523	3	4	718	1	0	0	0	0	1	0	0	0	854	594	21	4	1836	4	ARFGEF1	8	68139523	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	30418914	68139523	78224499	35	63193										
RAD54B	0	genome.wustl.edu	37	chr8	95399325	95399325	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tagtcagcaggaaacacactTagcaagcctttgtatagact	8	9	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	95399325	95399325	T	C	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	silent	c.1872	p.L624	0.000	pfam_HDA_complex_subunit-2/3	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	202	0	0	281	52	15.57	-	-	-	C	95399325	T	C	95399325	2	2	718	1	0	0	0	0	0	0	0	1	13075	1741	61	5		5	RAD54B	8	95399325	Silent	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	27259802	95399325	50964697	36	63194										
RGS22	0	genome.wustl.edu	37	chr8	101078504	101078504	+	Frame_Shift_Del	DEL	T	T	-													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tttgctaatgcaaaccaatcTtttgtttgagtataggaagc							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	101078504	101078504	T	-	DEL	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	frame_shift_del	c.615	p.D206fs	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	149	0	0	186	40	17.54	-	-	-	-	101078504	T	-	101078504	7	5	718	1	0	1	0	1	0	0	0	0	13389	1606	56	0	3263	0	RGS22	8	101078504	Frame_Shift_Del	DEL	T	TCGA-D8-A1XW-01A-11D-A14K-09	5679179	101078504	45285518	37	63195										
ZFAT	0	genome.wustl.edu	37	chr8	135622886	135622886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acttcttttctagttcaaggTcagactcgttacctaaggag	8	9	4	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	135622886	135622886	T	C	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	missense	c.461	p.D154G	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	192	0	0	314	43	12.01	-	-	-	C	135622886	T	C	135622886	3	2	718	1	0	0	0	0	1	0	0	0	17728	1667	58	5	3322	5	ZFAT	8	135622886	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	34544382	135622886	10741136	38	63196										
GLIS3	0	genome.wustl.edu	37	chr9	3856175	3856175	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tggtgaggagatggagcagaAggtgcaaacctgagaaaaca	15	5	0	4			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	9	3856175	3856175	A	C	SNP	GLIS3	ENST00000381971	human	ensembl	69_37n	-1	known	silent	c.2307	p.P769	0.978	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249	133	0	0	117	42	26.42	-	-	-	C	3856175	A	C	3856175	2	2	718	1	0	0	0	0	0	0	0	1	6499	59	3	5		5	GLIS3	9	3856175	Silent	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09		3856175	137357256	39	63197										
KCNT1	0	genome.wustl.edu	37	chr9	138669336	138669336	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cgcaaggagctgaaccccatCgtgctgctgctggacaacaa	11	13	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	9	138669336	138669336	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	silent	c.2502	p.I834	0.298	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	28	0	0	11	7	38.89	-	-	-	T	138669336	C	T	138669336	2	4	718	1	0	0	0	0	0	0	0	1	8145	874	31	1		1	KCNT1	9	138669336	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	134813161	138669336	2544095	40	63198										
GRID1	0	genome.wustl.edu	37	chr10	88123716	88123716	+	Missense_Mutation	SNP	A	A	T													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	accttcctgcacagcctggaAtgggttgttggcctcgatga							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	88123716	88123716	A	T	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.217	p.F73I	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	143	0	0	46	23	33.33	-	-	-	T	88123716	A	T	88123716	3	4	718	1	0	0	0	0	1	0	0	0	6822	101	4	5	2872	5	GRID1	10	88123716	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09		88123716	47411031	41	63199	464	2								
GRID1	0	genome.wustl.edu	37	chr10	88123717	88123717	+	Silent	SNP	T	T	A													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ccttcctgcacagcctggaaTgggttgttggcctcgatgac							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	88123717	88123717	T	A	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	silent	c.216	p.P72	0.996	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	144	0	0	46	23	33.33	-	-	-	A	88123717	T	A	88123717	2	1	718	1	0	0	0	0	0	0	0	1	6822	1451	51	5		5	GRID1	10	88123717	Silent	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	1	88123717	47411030	42	63200	464	2								
C10orf12	0	genome.wustl.edu	37	chr10	98742390	98742390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tgagtctgggaaaggctgagGacaaccaaagcatcagtgct	13	8	2	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	98742390	98742390	G	T	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1243	p.D415Y	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	39	0	0	21	5	19.23	-	-	-	T	98742390	G	T	98742390	3	4	718	1	0	0	0	0	1	0	0	0	1599	1174	41	2	1245	2	C10orf12	10	98742390	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	10618673	98742390	36792357	43	63201										
C10orf12	0	genome.wustl.edu	37	chr10	98742978	98742978	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acatgctggacaaagaagtcAaggagttacgaggagagatt	13	5	1	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	98742978	98742978	A	G	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.1831	p.K611E	0.001	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	36	0	0	37	6	13.95	-	-	-	G	98742978	A	G	98742978	3	3	718	1	0	0	0	0	1	0	0	0	1599	131	5	5	1833	5	C10orf12	10	98742978	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	588	98742978	36791769	44	63202										
CCDC147	0	genome.wustl.edu	37	chr10	106160488	106160488	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagcttgttcggcgcaatgaTgagttagctttgctctatga	11	8	1	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	106160488	106160488	T	A	SNP	CCDC147	ENST00000369704	human	ensembl	69_37n	1	known	missense	c.1866	p.D622E	0.580	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	133	0	0	72	8	10	-	-	-	A	106160488	T	A	106160488	3	1	718	1	0	0	0	0	1	0	0	0	2806	1461	51	5	1916	5	CCDC147	10	106160488	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	7417510	106160488	29374259	45	63203										
PTPRJ	0	genome.wustl.edu	37	chr11	48149442	48149442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctaactatacctacaagataCatgtggcgggggagacagat	11	8	0	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	48149442	48149442	C	T	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.1204	p.H402Y	0.003	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	87	0	0	36	4	10	-	-	-	T	48149442	C	T	48149442	3	4	718	1	0	0	0	0	1	0	0	0	12887	478	17	4	1230	4	PTPRJ	11	48149442	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09		48149442	86857074	46	63204										
CPT1A	0	genome.wustl.edu	37	chr11	68566686	68566686	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aactgtgtatacagacttacGtaatttgtagcccaccagga	8	9	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	68566686	68566686	G	T	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	nonsense	c.693	p.Y231*	0.427	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	110	0	0	74	31	29.52	-	-	-	T	68566686	G	T	68566686	4	4	718	1	0	0	0	0	0	1	0	0	3861	1159	40	3	1724	3	CPT1A	11	68566686	Nonsense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	20417244	68566686	66439830	47	63205										
SIK2	0	genome.wustl.edu	37	chr11	111594680	111594680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctccctgtcagtatcctgtgGatggagcccagcagagcgac	12	13	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	111594680	111594680	G	A	SNP	SIK2	ENST00000304987	human	ensembl	69_37n	1	known	missense	c.2608	p.D870N	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145	68	0	0	71	22	23.66	-	-	-	A	111594680	G	A	111594680	3	1	718	1	0	0	0	0	1	0	0	0	14407	1174	41	2	2666	2	SIK2	11	111594680	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	43027994	111594680	23411836	48	63206										
OR8D1	0	genome.wustl.edu	37	chr11	124180486	124180486	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aagctgctgaggaaatagtaCatgggggtgtgaagtagagg	17	3	0	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	124180486	124180486	C	G	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	missense	c.177	p.M59I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	83	0	0	86	12	12.24	-	-	-	G	124180486	C	G	124180486	3	3	718	1	0	0	0	0	1	0	0	0	11304	478	17	4	752	4	OR8D1	11	124180486	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	12585806	124180486	10826030	49	63207										
VPS26B	0	genome.wustl.edu	37	chr11	134115368	134115368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tgtggcggaagggtgacatcGtacggaagagcatgtcccac	15	9	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	134115368	134115368	G	A	SNP	VPS26B	ENST00000281187	human	ensembl	69_37n	1	known	missense	c.895	p.V299I	1.000	NULL	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502	101	0	0	29	32	52.46	-	-	-	A	134115368	G	A	134115368	3	1	718	1	0	0	0	0	1	0	0	0	17295	1145	40	1	917	1	VPS26B	11	134115368	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	9934882	134115368	891148	50	63208										
MYO1A	0	genome.wustl.edu	37	chr12	57441140	57441140	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ccttcacagagttcacctgcTctcctttcccacagacggca	6	17	3	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	57441140	57441140	T	C	SNP	MYO1A	ENST00000300119	human	ensembl	69_37n	-1	known	missense	c.377	p.E126G	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1A	HGNC	ENSG00000166866	43	0	0	30	20	40	-	-	-	C	57441140	T	C	57441140	3	2	718	1	0	0	0	0	1	0	0	0	10140	1551	54	5	2850	5	MYO1A	12	57441140	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09		57441140	76410755	51	63209										
TRHDE	0	genome.wustl.edu	37	chr12	72956000	72956000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagaaatgatctctggaataCattatcggaggtaaagtata	9	5	1	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	72956000	72956000	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	1	known	missense	c.1709	p.T570I	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	65	0	0	47	19	28.79	-	-	-	T	72956000	C	T	72956000	3	4	718	1	0	0	0	0	1	0	0	0	16575	478	17	4	1739	4	TRHDE	12	72956000	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	15514860	72956000	60895895	52	63210										
BBS10	0	genome.wustl.edu	37	chr12	76741020	76741020	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	catgtcaccatctgctgggcGgtacacagaaaaatctttct	8	11	4	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	76741020	76741020	G	T	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.745	p.R249S	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	91	0	0	42	22	34.38	-	-	-	T	76741020	G	T	76741020	3	4	718	1	0	0	0	0	1	0	0	0	1340	1116	39	3	1430	3	BBS10	12	76741020	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	3785020	76741020	57110875	53	63211										
PAH	0	genome.wustl.edu	37	chr12	103288660	103288660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	atctttctttaaacgagaagGtctagattcaatgtgggtca	9	6	5	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	103288660	103288660	G	A	SNP	PAH	ENST00000553106	human	ensembl	69_37n	-1	known	missense	c.205	p.P69S	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759	118	0	0	65	17	20.73	-	-	-	A	103288660	G	A	103288660	3	1	718	1	0	0	0	0	1	0	0	0	11467	1261	44	4	1197	4	PAH	12	103288660	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	26547640	103288660	30563235	54	63212										
NUAK1	0	genome.wustl.edu	37	chr12	106461184	106461184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	agatgcctttcttgggcatcGtggccgactgcttggggctg	15	10	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	106461184	106461184	G	A	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.1382	p.T461M	0.984	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	90	0	0	46	16	25.81	-	-	-	A	106461184	G	A	106461184	3	1	718	1	0	0	0	0	1	0	0	0	10785	1145	40	1	607	1	NUAK1	12	106461184	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	3172524	106461184	27390711	55	63213										
ZNF219	0	genome.wustl.edu	37	chr14	21560535	21560535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggctccttgaagcagcggccGcacaccggacacgcatgatc	12	15	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	21560535	21560535	G	A	SNP	ZNF219	ENST00000360947	human	ensembl	69_37n	-1	known	silent	c.921	p.C307	0.981	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_recept	-	no_errors	ZNF219	HGNC	ENSG00000165804	25	0	0	8	10	55.56	-	-	-	A	21560535	G	A	21560535	2	1	718	1	0	0	0	0	0	0	0	1	17869	1079	38	1		1	ZNF219	14	21560535	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		21560535	85789005	56	63214										
YLPM1	0	genome.wustl.edu	37	chr14	75248373	75248373	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagtgttgcctccttcattgCcaccaccagtgatgccccct	7	17	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	75248373	75248373	C	A	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.1627	p.P543T	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	248	0	0	62	63	50.4	-	-	-	A	75248373	C	A	75248373	3	1	718	1	0	0	0	0	1	0	0	0	17583	739	26	4	1641	4	YLPM1	14	75248373	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	53687838	75248373	32101167	57	63215										
CDC42BPB	0	genome.wustl.edu	37	chr14	103400160	103400160	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctattcgatggagttgagtgTttggtggagtccgaatcagg	15	5	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	103400160	103400160	T	G	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.5025	p.K1675N	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	133	1	0.75	46	35	43.21	-	-	-	G	103400160	T	G	103400160	3	3	718	1	0	0	0	0	1	0	0	0	3102	1722	60	5	114	5	CDC42BPB	14	103400160	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	28151787	103400160	3949380	58	63216										
DYX1C1	0	genome.wustl.edu	37	chr15	55727258	55727258	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ttccgttgcaaacaatttgcTaatgagacaaaaacagagaa	7	7	0	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	15	55727258	55727258	T	C	SNP	DYX1C1	ENST00000321149	human	ensembl	69_37n	-1	known	splice_site	c.894-2	e7-2	0.997	-	-	-	no_errors	DYX1C1	HGNC	ENSG00000256061	101	0	0	45	31	40.79	-	-	-	C	55727258	T	C	55727258	5	2	718	1	0	0	0	0	0	0	1	0	4897	1536	53	5	485	5	DYX1C1	15	55727258	Splice_Site	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09		55727258	46804134	59	63217										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84488589	84488589	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cctccagatgcagaagatttCagagcccagcagtgctcagc	10	13	2	4			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	15	84488589	84488589	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.390	p.F130	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	70	0	0	42	20	32.26	-	-	-	T	84488589	C	T	84488589	2	4	718	1	0	0	0	0	0	0	0	1	276	825	29	2		2	ADAMTSL3	15	84488589	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	28761331	84488589	18042803	60	63218										
TPSB2	0	genome.wustl.edu	37	chr16	1279650	1279650	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tgcatccagtatcggtcgcgGactctcaggctcacctgcca	10	15	2	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	1279650	1279650	G	C	SNP	TPSB2	ENST00000430512	human	ensembl	69_37n	-1	known	silent	c.150	p.V50	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSB2	HGNC	ENSG00000197253	40	0	0	9	24	70.59	-	-	-	C	1279650	G	C	1279650	2	2	718	1	0	0	0	0	0	0	0	1	16520	1161	41	2		2	TPSB2	16	1279650	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		1279650	89075103	61	63219										
ZNF263	0	genome.wustl.edu	37	chr16	3339518	3339518	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gtcctgagctgggaagacctCatgaccggtcgcaaggggat	15	10	1	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	3339518	3339518	C	T	SNP	ZNF263	ENST00000219069	human	ensembl	69_37n	1	known	missense	c.1012	p.H338Y	0.236	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	33	0	0	33	9	21.43	-	-	-	T	3339518	C	T	3339518	3	4	718	1	0	0	0	0	1	0	0	0	17899	826	29	2	1034	2	ZNF263	16	3339518	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	2059868	3339518	87015235	62	63220										
DNAH3	0	genome.wustl.edu	37	chr16	20997028	20997028	+	Frame_Shift_Del	DEL	G	G	-													0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctttccagtgggtgacaagtGgataagcacctgtaagaaaa							TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	20997028	20997028	G	-	DEL	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	frame_shift_del	c.7036	p.H2346fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	43	0	0	31	14	30.43	-	-	-	-	20997028	G	-	20997028	7	5	718	1	0	1	0	1	0	0	0	0	4639	1348	47	0	5373	0	DNAH3	16	20997028	Frame_Shift_Del	DEL	G	TCGA-D8-A1XW-01A-11D-A14K-09	17657510	20997028	69357725	63	63221										
CDIPT	0	genome.wustl.edu	37	chr16	29872462	29872462	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagtgactggccacatccaaActcatgctgatttggaagaa	9	10	1	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	29872462	29872462	A	G	SNP	CDIPT	ENST00000219789	human	ensembl	69_37n	-1	known	silent	c.297	p.S99	0.997	pirsf_CDP_diag_ino_3_P_euk	pfam_CDP-OH_P_trans,pirsf_CDP_diag_ino_3_P_euk	-	no_errors	CDIPT	HGNC	ENSG00000103502	103	0	0	60	21	25.61	-	-	-	G	29872462	A	G	29872462	2	3	718	1	0	0	0	0	0	0	0	1	3152	40	2	5		5	CDIPT	16	29872462	Silent	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	8875434	29872462	60482291	64	63222										
PMFBP1	0	genome.wustl.edu	37	chr16	72166723	72166723	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tcagcctgcagggccttgcaCtccgcctccttggacttgtc	10	16	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	72166723	72166723	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	silent	c.1371	p.E457	0.006	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	127	0	0	105	41	28.08	-	-	-	T	72166723	C	T	72166723	2	4	718	1	0	0	0	0	0	0	0	1	12208	564	20	4		4	PMFBP1	16	72166723	Silent	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	42294261	72166723	18188030	65	63223										
ZFHX3	0	genome.wustl.edu	37	chr16	72830766	72830766	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggtggcgttccctctggcatCtgaagcaatgcgtggaggga	16	9	2	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	72830766	72830766	C	G	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.5815	p.D1939H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	130	0	0	78	30	27.78	-	-	-	G	72830766	C	G	72830766	3	3	718	1	0	0	0	0	1	0	0	0	17730	913	32	2	5304	2	ZFHX3	16	72830766	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	664043	72830766	17523987	66	63224										
OR1A2	0	genome.wustl.edu	37	chr17	3101122	3101122	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gcctaatgcagatgtatttcAtgatagccttggccaaggca	10	9	1	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	3101122	3101122	A	T	SNP	OR1A2	ENST00000381951	human	ensembl	69_37n	1	known	missense	c.310	p.M104L	0.883	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150	211	0	0	96	51	34.69	-	-	-	T	3101122	A	T	3101122	3	4	718	1	0	0	0	0	1	0	0	0	11023	217	8	5	312	5	OR1A2	17	3101122	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09		3101122	78094088	67	63225										
TP53	0	genome.wustl.edu	37	chr17	7578554	7578554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cttgttgagggcaggggagtActgtaggaagaggaaggaga	19	3	0	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	7578554	7578554	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.376	p.Y126N	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	80	0	0	21	33	61.11	-	-	-	T	7578554	A	T	7578554	3	4	718	1	0	0	0	0	1	0	0	0	16477	405	14	5	922	5	TP53	17	7578554	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	4477432	7578554	73616656	68	63226										
BLMH	0	genome.wustl.edu	37	chr17	28613877	28613877	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cttctggttgcctctgttgtAtaagattcagggaagcattt	10	7	3	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	28613877	28613877	A	C	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	nonsense	c.507	p.Y169*	0.852	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578	127	0	0	85	42	33.07	-	-	-	C	28613877	A	C	28613877	4	2	718	1	0	0	0	0	0	1	0	0	1451	456	16	5	892	5	BLMH	17	28613877	Nonsense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	21035323	28613877	52581333	69	63227										
FMNL1	0	genome.wustl.edu	37	chr17	43314962	43314962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cggccgtgtgcttggtgcggGgaggacatgacatcatcctt	15	10	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	43314962	43314962	G	A	SNP	FMNL1	ENST00000328118	human	ensembl	69_37n	1	known	missense	c.850	p.G284R	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL1	HGNC	ENSG00000184922	84	0	0	20	45	69.23	-	-	-	A	43314962	G	A	43314962	3	1	718	1	0	0	0	0	1	0	0	0	5997	1233	43	4	884	4	FMNL1	17	43314962	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	14701085	43314962	37880248	70	63228										
FBXO15	0	genome.wustl.edu	37	chr18	71740756	71740756	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctaagataaaggaccaggttGacaataaggtattcttcggt	10	6	1	2			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	18	71740756	71740756	G	C	SNP	FBXO15	ENST00000419743	human	ensembl	69_37n	-1	known	silent	c.1473	p.V491	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO15	HGNC	ENSG00000141665	205	2	0.96	144	21	12.73	-	-	-	C	71740756	G	C	71740756	2	2	718	1	0	0	0	0	0	0	0	1	5774	1277	45	2		2	FBXO15	18	71740756	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		71740756	6336492	71	63229										
ZNF208	0	genome.wustl.edu	37	chr19	22171632	22171632	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctaacatcacatttctatatAaattctgctgtgcagtgtcc	5	10	3	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	22171632	22171632	A	C	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	nonsense	c.83	p.L28*	0.007	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	316	0	0	332	85	20.38	-	-	-	C	22171632	A	C	22171632	4	2	718	1	0	0	0	0	0	1	0	0	17862	372	13	5	3771	5	ZNF208	19	22171632	Nonsense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09		22171632	36957351	72	63230										
ZNF568	0	genome.wustl.edu	37	chr19	37427682	37427682	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	taaggatgtggctgttgaccTtacccaggaggagtgggagc	16	7	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	37427682	37427682	T	A	SNP	ZNF568	ENST00000333987	human	ensembl	69_37n	1	known	missense	c.170	p.L57H	0.987	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	143	0	0	89	22	19.82	-	-	-	A	37427682	T	A	37427682	3	1	718	1	0	0	0	0	1	0	0	0	18095	1609	56	5	180	5	ZNF568	19	37427682	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	15256050	37427682	21701301	73	63231										
ITPKC	0	genome.wustl.edu	37	chr19	41231346	41231346	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cagctttctggacatgctggTaagtggggtggtggtggaca	17	6	1	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	41231346	41231346	T	G	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	splice_site	c.1255+2	e2+2	1.000	-	-	-	no_errors	ITPKC	HGNC	ENSG00000086544	82	0	0	72	17	19.1	-	-	-	G	41231346	T	G	41231346	5	3	718	1	0	0	0	0	0	0	1	0	7973	1652	57	5	1263	5	ITPKC	19	41231346	Splice_Site	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09	3803664	41231346	17897637	74	63232										
RSPH6A	0	genome.wustl.edu	37	chr19	46299287	46299287	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	cactggggtactcttgttgaAtgggggctggcagggccggg	19	8	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	46299287	46299287	A	C	SNP	RSPH6A	ENST00000221538	human	ensembl	69_37n	-1	known	missense	c.1994	p.I665S	0.587	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941	90	0	0	83	13	13.54	-	-	-	C	46299287	A	C	46299287	3	2	718	1	0	0	0	0	1	0	0	0	13793	101	4	5	163	5	RSPH6A	19	46299287	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	5067941	46299287	12829696	75	63233										
GP6	0	genome.wustl.edu	37	chr19	55526258	55526258	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tcccatgccatgatccctccCttggatacgaccgtgcctgg	9	16	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	55526258	55526258	C	G	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	missense	c.1055	p.R352T	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	78	0	0	37	13	25.49	-	-	-	G	55526258	C	G	55526258	3	3	718	1	0	0	0	0	1	0	0	0	6634	681	24	4	811	4	GP6	19	55526258	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	9226971	55526258	3602725	76	63234										
PHF20	0	genome.wustl.edu	37	chr20	34528959	34528959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aggatggactccattgagaaGgagttggatggtagggctcc	16	6	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	20	34528959	34528959	G	A	SNP	PHF20	ENST00000374012	human	ensembl	69_37n	1	known	silent	c.2886	p.K962	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	65	0	0	27	26	49.06	-	-	-	A	34528959	G	A	34528959	2	1	718	1	0	0	0	0	0	0	0	1	11905	991	35	4		4	PHF20	20	34528959	Silent	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09		34528959	28496561	77	63235										
TPD52L2	0	genome.wustl.edu	37	chr20	62520553	62520553	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ctctttaaaggaactctgcgAccttcaagtcgtttgaggac	9	10	3	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	20	62520553	62520553	A	C	SNP	TPD52L2	ENST00000217121	human	ensembl	69_37n	1	known	missense	c.556	p.T186P	0.962	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L2	HGNC	ENSG00000101150	186	1	0.53	107	97	47.32	-	-	-	C	62520553	A	C	62520553	3	2	718	1	0	0	0	0	1	0	0	0	16495	275	10	5	586	5	TPD52L2	20	62520553	Missense_Mutation	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	27991594	62520553	504967	78	63236										
CECR2	0	genome.wustl.edu	37	chr22	18028881	18028881	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aatttttagacctggacaacCataacgcagctaccaagcgg	8	11	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	18028881	18028881	C	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.3838	p.H1280N	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	46	0	0	27	24	47.06	-	-	-	A	18028881	C	A	18028881	3	1	718	1	0	0	0	0	1	0	0	0	3235	594	21	4	3902	4	CECR2	22	18028881	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09		18028881	33275685	79	63237										
SLC7A4	0	genome.wustl.edu	37	chr22	21385708	21385708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	actccaggcacgggccacggCggcgccaccgatgatgtatt	13	14	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	21385708	21385708	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	69_37n	-1	known	missense	c.394	p.A132T	0.978	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960	24	0	0	10	5	33.33	-	-	-	T	21385708	C	T	21385708	3	4	718	1	0	0	0	0	1	0	0	0	14788	768	27	1	1529	1	SLC7A4	22	21385708	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	3356827	21385708	29918858	80	63238										
EWSR1	0	genome.wustl.edu	37	chr22	29670255	29670255	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	tgttttgtgctttccacagtAgaagggaccagtacaggttt	11	7	0	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	29670255	29670255	A	G	SNP	EWSR1	ENST00000447973	human	ensembl	69_37n	1	putative	splice_site	c.230-2	e5-2	1.000	-	-	-	no_stop_codon	EWSR1	HGNC	ENSG00000182944	197	0	0	216	88	28.95	-	-	-	G	29670255	A	G	29670255	5	3	718	1	0	0	0	0	0	0	1	0	5332	434	15	5	246	5	EWSR1	22	29670255	Splice_Site	SNP	A	TCGA-D8-A1XW-01A-11D-A14K-09	8284547	29670255	21634311	81	63239										
FAM83F	0	genome.wustl.edu	37	chr22	40417461	40417461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	ggttggcctccattactcctCcactgtggctcgaaagctta	9	13	0	0			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	40417461	40417461	C	T	SNP	FAM83F	ENST00000333407	human	ensembl	69_37n	1	known	missense	c.947	p.S316F	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477	36	0	0	31	22	41.51	-	-	-	T	40417461	C	T	40417461	3	4	718	1	0	0	0	0	1	0	0	0	5683	855	30	2	961	2	FAM83F	22	40417461	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	10747206	40417461	10887105	82	63240										
PACSIN2	0	genome.wustl.edu	37	chr22	43287157	43287157	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	gcctcggacatgaaggccatCcaggccttctccacggtccc	10	17	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	43287157	43287157	C	G	SNP	PACSIN2	ENST00000263246	human	ensembl	69_37n	-1	known	missense	c.249	p.W83C	1.000	pfam_FCH,smart_FCH	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266	45	0	0	52	21	28.77	-	-	-	G	43287157	C	G	43287157	3	3	718	1	0	0	0	0	1	0	0	0	11448	856	30	2	1243	2	PACSIN2	22	43287157	Missense_Mutation	SNP	C	TCGA-D8-A1XW-01A-11D-A14K-09	2869696	43287157	8017409	83	63241										
IGSF1	0	genome.wustl.edu	37	chrX	130416483	130416483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	aggtcttccaggtgagaagaTagtggcagctatagatgcca	13	7	1	3			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	X	130416483	130416483	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.1181	p.Y394C	0.002	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	160	0	0	47	66	58.41	-	-	-	C	130416483	T	C	130416483	3	2	718	1	0	0	0	0	1	0	0	0	7650	1406	49	5	2900	5	IGSF1	23	130416483	Missense_Mutation	SNP	T	TCGA-D8-A1XW-01A-11D-A14K-09		130416483	24854077	84	63242										
DNASE1L1	0	genome.wustl.edu	37	chrX	153631301	153631301	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0864197530864197	7	0.513936573592011	1.44086294416244	1.7643219724438	1.26669269816478	1	1	0	acctcctcctcggtgagctgGaagctcgtggggaagtcaaa	13	11	1	1			TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	X	153631301	153631301	G	C	SNP	DNASE1L1	ENST00000014935	human	ensembl	69_37n	-1	known	missense	c.756	p.F252L	0.002	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L1	HGNC	ENSG00000013563	39	0	0	4	14	73.68	-	-	-	C	153631301	G	C	153631301	3	2	718	1	0	0	0	0	1	0	0	0	4696	1165	41	2	160	2	DNASE1L1	23	153631301	Missense_Mutation	SNP	G	TCGA-D8-A1XW-01A-11D-A14K-09	23214818	153631301	1639259	85	63243										
C1orf173	0	genome.wustl.edu	37	chr1	75037178	75037178	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cccactccgtgctaattcctCtaccaccaccttccctgcag	4	20	1	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	75037178	75037178	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.4216	p.E1406K	0.782	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	66	0	0	43	46	51.69	-	-	-	T	75037178	C	T	75037178	3	4	719	1	0	0	0	0	1	0	0	0	2033	922	32	2	380	2	C1orf173	1	75037178	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		75037178	174213443	1	63244										
KIF26B	0	genome.wustl.edu	37	chr1	245582982	245582982	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gcctgcagtgtcccagcctcGcagggctcctgcgtggccag	14	16	0	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	245582982	245582982	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.1101	p.S367	0.012	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	61	0	0	29	70	70.71	-	-	-	T	245582982	G	T	245582982	2	4	719	1	0	0	0	0	0	0	0	1	8347	1074	38	3		3	KIF26B	1	245582982	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	170545804	245582982	3667639	2	63245										
OR2T2	0	genome.wustl.edu	37	chr1	248616764	248616764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tctgtctcctacacgcacatCctcctgactgtccacaggat	6	16	2	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	248616764	248616764	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.666	p.I222	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	101	1	0.98	35	10	22.22	-	-	-	T	248616764	C	T	248616764	2	4	719	1	0	0	0	0	0	0	0	1	11093	845	30	2		2	OR2T2	1	248616764	Silent	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	3033782	248616764	633857	3	63246										
USP34	0	genome.wustl.edu	37	chr2	61416190	61416190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tgtactgacaggagcaaagcGagtgccctcaggtcctacaa	11	11	1	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	61416190	61416190	G	C	SNP	USP34	ENST00000411912	human	ensembl	69_37n	-1	novel	missense	c.2917	p.R973G	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP34	HGNC	ENSG00000115464	151	0	0	115	34	22.82	-	-	-	C	61416190	G	C	61416190	3	2	719	1	0	0	0	0	1	0	0	0	17162	1045	37	3	760	3	USP34	2	61416190	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		61416190	181783183	4	63247										
ANTXR1	0	genome.wustl.edu	37	chr2	69472437	69472437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	aacgcctaccacacctcctcGccgcctcctgcccccatcta	4	23	1	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	69472437	69472437	G	A	SNP	ANTXR1	ENST00000303714	human	ensembl	69_37n	1	known	silent	c.1515	p.S505	0.111	NULL	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604	143	0	0	116	41	26.11	-	-	-	A	69472437	G	A	69472437	2	1	719	1	0	0	0	0	0	0	0	1	710	1074	38	1		1	ANTXR1	2	69472437	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	8056247	69472437	173726936	5	63248										
SCN9A	0	genome.wustl.edu	37	chr2	167055875	167055875	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	acactaaaattctccagtatGactgcaatgtacatgttcac	5	10	2	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	167055875	167055875	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.5277	p.V1759	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	132	0	0	124	28	18.42	-	-	-	A	167055875	G	A	167055875	2	1	719	1	0	0	0	0	0	0	0	1	14013	1277	45	2		2	SCN9A	2	167055875	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	97583438	167055875	76143498	6	63249										
FN1	0	genome.wustl.edu	37	chr2	216262532	216262532	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tcctgagtctgaagtcacttCtcgtggtgcctctcctccct	8	15	4	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	216262532	216262532	C	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	nonsense	c.3388	p.E1130*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	108	0	0	79	17	17.53	-	-	-	A	216262532	C	A	216262532	4	1	719	1	0	0	0	0	0	1	0	0	6008	922	32	2	4145	2	FN1	2	216262532	Nonsense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	49206657	216262532	26936841	7	63250										
SPHKAP	0	genome.wustl.edu	37	chr2	228881454	228881454	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cattcggtaacagagtctttCctcgggcaatcgagagactc	10	11	1	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	228881454	228881454	C	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4116	p.R1372S	0.022	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	61	0	0	62	13	17.33	-	-	-	A	228881454	C	A	228881454	3	1	719	1	0	0	0	0	1	0	0	0	15139	854	30	2	1010	2	SPHKAP	2	228881454	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	12618922	228881454	14317919	8	63251										
HRH1	0	genome.wustl.edu	37	chr3	11301339	11301339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tctacctgcccaccttgctcAtgctctggttctatgccaag	7	15	4	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	11301339	11301339	A	G	SNP	HRH1	ENST00000397056	human	ensembl	69_37n	1	known	missense	c.616	p.M206V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Histamine_H1_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	HRH1	HGNC	ENSG00000196639	191	0	0	137	29	17.47	-	-	-	G	11301339	A	G	11301339	3	3	719	1	0	0	0	0	1	0	0	0	7406	217	8	5	618	5	HRH1	3	11301339	Missense_Mutation	SNP	A	TCGA-D8-A1XY-01A-11D-A14K-09		11301339	186721091	9	63252										
LRRC2	0	genome.wustl.edu	37	chr3	46560544	46560544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	acactttggtggtatagctgGgaacagattctgtaacagaa	11	6	1	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	46560544	46560544	G	A	SNP	LRRC2	ENST00000296144	human	ensembl	69_37n	-1	known	missense	c.1076	p.P359L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC2	HGNC	ENSG00000163827	112	0	0	75	20	21.05	-	-	-	A	46560544	G	A	46560544	3	1	719	1	0	0	0	0	1	0	0	0	9042	1232	43	4	43	4	LRRC2	3	46560544	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	35259205	46560544	151461886	10	63253										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	82	0	0	70	44	38.6	-	-	-	A	178936091	G	A	178936091	3	1	719	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	132375547	178936091	19086339	11	63254										
MCCC1	0	genome.wustl.edu	37	chr3	182810273	182810273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cacccagttttttggctgtgCgcatcaccctgcaggcaatt	9	13	1	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	182810273	182810273	C	T	SNP	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	missense	c.197	p.R66H	0.997	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	131	0	0	177	27	13.24	-	-	-	T	182810273	C	T	182810273	3	4	719	1	0	0	0	0	1	0	0	0	9445	768	27	1	2048	1	MCCC1	3	182810273	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	3874182	182810273	15212157	12	63255										
ATP13A5	0	genome.wustl.edu	37	chr3	193068973	193068974	+	Frame_Shift_Del	DEL	AT	AT	-													0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	agggtgaaggcttggaacacAtagaatggatttaaaacctg							TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	193068973	193068974	AT	-	DEL	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	frame_shift_del	c.624_623	p.Y208fs	0.891:0.997	pfam_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	61	0	0	94	17	15.32	-	-	-	-	193068974	AT	-	193068973	7	5	719	1	0	1	0	1	0	0	0	0	1131	224	8	0	3126	0	ATP13A5	3	193068973	Frame_Shift_Del	DEL	AT	TCGA-D8-A1XY-01A-11D-A14K-09	10258700	193068973	4953457	13	63256										
UGT8	0	genome.wustl.edu	37	chr4	115586882	115586883	+	Frame_Shift_Del	DEL	AT	AT	-													0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	taggaaacaacactaaactcAtagaatggttaccacaaaat							TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	4	115586882	115586883	AT	-	DEL	UGT8	ENST00000310836	human	ensembl	69_37n	1	known	frame_shift_del	c.1012_1013	p.I338fs	0.998:1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	167	0	0	117	36	23.23	-	-	-	-	115586883	AT	-	115586882	7	5	719	1	0	1	0	1	0	0	0	0	17062	217	8	0	1022	0	UGT8	4	115586882	Frame_Shift_Del	DEL	AT	TCGA-D8-A1XY-01A-11D-A14K-09		115586882	75567394	14	63257										
DAB2	0	genome.wustl.edu	37	chr5	39383203	39383203	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tcaggattaggggtgggaaaGaagttgagattggcagaaaa	16	2	1	3			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	39383203	39383203	G	A	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	silent	c.858	p.F286	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	106	0	0	93	51	35.42	-	-	-	A	39383203	G	A	39383203	2	1	719	1	0	0	0	0	0	0	0	1	4250	933	33	2		2	DAB2	5	39383203	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		39383203	141532057	15	63258										
CAMK4	0	genome.wustl.edu	37	chr5	110679796	110679796	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tgctctcaaagtgttaaagaAaacagtaagtttatttctta	6	5	2	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	110679796	110679796	A	C	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	1	known	missense	c.236	p.K79T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	93	0	0	73	14	16.09	-	-	-	C	110679796	A	C	110679796	3	2	719	1	0	0	0	0	1	0	0	0	2630	14	1	5	242	5	CAMK4	5	110679796	Missense_Mutation	SNP	A	TCGA-D8-A1XY-01A-11D-A14K-09	71296593	110679796	70235464	16	63259										
GUSB	0	genome.wustl.edu	37	chr7	65439687	65439687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gccagtcgaagcccttccctCggatctaggagatagcagag	12	12	1	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	7	65439687	65439687	C	T	SNP	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	missense	c.1070	p.R357Q	1.000	pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	33	0	0	22	13	37.14	-	-	-	T	65439687	C	T	65439687	3	4	719	1	0	0	0	0	1	0	0	0	6953	884	31	1	909	1	GUSB	7	65439687	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		65439687	93698976	17	63260										
MGAM	0	genome.wustl.edu	37	chr7	141755462	141755462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	ctttggggaaactgagcacaGgtcctataggagagacttgg	14	7	0	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	7	141755462	141755462	G	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.3419	p.R1140M	0.057	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	122	0	0	88	45	33.83	-	-	-	T	141755462	G	T	141755462	3	4	719	1	0	0	0	0	1	0	0	0	9612	1000	35	4	3525	4	MGAM	7	141755462	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	76315775	141755462	17383201	18	63261										
ZFP37	0	genome.wustl.edu	37	chr9	115806351	115806351	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	atctaaattctgtttcaaaaTttttccacatgactcaaatt	2	8	4	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	9	115806351	115806351	T	A	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.592	p.I198F	0.267	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	120	0	0	98	31	24.03	-	-	-	A	115806351	T	A	115806351	3	1	719	1	0	0	0	0	1	0	0	0	17744	1493	52	5	1349	5	ZFP37	9	115806351	Missense_Mutation	SNP	T	TCGA-D8-A1XY-01A-11D-A14K-09		115806351	25407080	19	63262										
EHMT1	0	genome.wustl.edu	37	chr9	140672412	140672412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cccgagggctttgatccaacGggacctgctgggcttgggag	16	11	0	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	9	140672412	140672412	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	silent	c.2097	p.T699	0.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	43	0	0	19	11	36.67	-	-	-	A	140672412	G	A	140672412	2	1	719	1	0	0	0	0	0	0	0	1	5018	1103	39	1		1	EHMT1	9	140672412	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	24866061	140672412	541019	20	63263										
UEVLD	0	genome.wustl.edu	37	chr11	18566328	18566328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tactcagtttccatgttacaTaggtcatgatttccactaaa	5	9	2	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	18566328	18566328	T	C	SNP	UEVLD	ENST00000396197	human	ensembl	69_37n	-1	known	missense	c.902	p.Y301C	0.971	pfam_Lactate/malate_DH_N,prints_L-lactate/malate_DH	pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH	-	no_errors	UEVLD	HGNC	ENSG00000151116	96	0	0	96	27	21.95	-	-	-	C	18566328	T	C	18566328	3	2	719	1	0	0	0	0	1	0	0	0	17030	1406	49	5	529	5	UEVLD	11	18566328	Missense_Mutation	SNP	T	TCGA-D8-A1XY-01A-11D-A14K-09		18566328	116440188	21	63264										
SERPING1	0	genome.wustl.edu	37	chr11	57367733	57367733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cagaggccgtgttgggggatGctttggtagatttctccctg	15	8	1	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	57367733	57367733	G	A	SNP	SERPING1	ENST00000278407	human	ensembl	69_37n	1	known	missense	c.433	p.A145T	0.399	pfam_Sepin_dom,superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	111	0	0	141	40	22.1	-	-	-	A	57367733	G	A	57367733	3	1	719	1	0	0	0	0	1	0	0	0	14204	1319	46	4	439	4	SERPING1	11	57367733	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	38801405	57367733	77638783	22	63265										
ALG8	0	genome.wustl.edu	37	chr11	77812019	77812019	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	agttcctttattcattgtttCtttgtcttgccaatagcaga	6	8	3	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	77812019	77812019	C	T	SNP	ALG8	ENST00000530608	human	ensembl	69_37n	-1	novel	missense	c.677	p.R226K	0.994	NULL	pfam_Glyco_trans_ALG6/ALG8	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALG8	HGNC	ENSG00000159063	90	0	0	64	23	26.44	-	-	-	T	77812019	C	T	77812019	3	4	719	1	0	0	0	0	1	0	0	0	523	912	32	2	12	2	ALG8	11	77812019	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	20444286	77812019	57194497	23	63266										
DIP2B	0	genome.wustl.edu	37	chr12	51112558	51112558	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	acgtatagcacaagctgctgGaagggatctgggacaaatag	13	7	1	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	12	51112558	51112558	G	T	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.2918	p.G973V	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	133	1	0.75	234	64	21.48	-	-	-	T	51112558	G	T	51112558	3	4	719	1	0	0	0	0	1	0	0	0	4564	1174	41	2	3012	2	DIP2B	12	51112558	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		51112558	82739337	24	63267										
ZNF10	0	genome.wustl.edu	37	chr12	133733005	133733005	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tctttcagacagagcacacaTctcattctgcatcagagaac	6	12	5	3			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	12	133733005	133733005	T	G	SNP	ZNF10	ENST00000248211	human	ensembl	69_37n	1	known	missense	c.1173	p.H391Q	0.400	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223	42	0	0	43	9	16.98	-	-	-	G	133733005	T	G	133733005	3	3	719	1	0	0	0	0	1	0	0	0	17808	1432	50	5	1187	5	ZNF10	12	133733005	Missense_Mutation	SNP	T	TCGA-D8-A1XY-01A-11D-A14K-09	82620447	133733005	118890	25	63268										
ATP7B	0	genome.wustl.edu	37	chr13	52548306	52548306	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gtgccctggacctggtttctCggtggggagccaggggaatg	18	9	1	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	13	52548306	52548306	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.1050	p.P350	0.000	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	49	0	0	21	11	34.38	-	-	-	T	52548306	C	T	52548306	2	4	719	1	0	0	0	0	0	0	0	1	1195	871	31	1		1	ATP7B	13	52548306	Silent	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		52548306	62621572	26	63269										
SPTB	0	genome.wustl.edu	37	chr14	65239968	65239968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tcaaagtcttgccccatttcCggggaagaggccactagctc	10	13	2	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	14	65239968	65239968	C	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	silent	c.5148	p.P1716	0.384	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	76	0	0	62	10	13.89	-	-	-	T	65239968	C	T	65239968	2	4	719	1	0	0	0	0	0	0	0	1	15209	639	23	1		1	SPTB	14	65239968	Silent	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		65239968	42109572	27	63270										
MAPK6	0	genome.wustl.edu	37	chr15	52356190	52356190	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	ttgatccaagagctctgtccGatgtcactgatgaagaagaa	10	8	2	6			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	15	52356190	52356190	G	T	SNP	MAPK6	ENST00000261845	human	ensembl	69_37n	1	known	missense	c.1159	p.D387Y	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	96	0	0	81	26	24.07	-	-	-	T	52356190	G	T	52356190	3	4	719	1	0	0	0	0	1	0	0	0	9352	1058	37	3	1177	3	MAPK6	15	52356190	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		52356190	50175202	28	63271										
ADAMTS17	0	genome.wustl.edu	37	chr15	100672248	100672248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tcctctgcctgaagcgggctCccgtcccacatgttcggctg	11	16	1	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	15	100672248	100672248	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.1685	p.G562E	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	43	0	0	22	9	29.03	-	-	-	T	100672248	C	T	100672248	3	4	719	1	0	0	0	0	1	0	0	0	262	855	30	2	1646	2	ADAMTS17	15	100672248	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	48316058	100672248	1859144	29	63272										
PRSS8	0	genome.wustl.edu	37	chr16	31143759	31143759	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	cctgtgcttacctggcaggcGtccttgcccccctccacata	8	18	0	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	16	31143759	31143759	G	A	SNP	PRSS8	ENST00000317508	human	ensembl	69_37n	-1	known	silent	c.696	p.D232	0.974	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS8	HGNC	ENSG00000052344	60	0	0	93	34	26.77	-	-	-	A	31143759	G	A	31143759	2	1	719	1	0	0	0	0	0	0	0	1	12715	1136	40	1		1	PRSS8	16	31143759	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		31143759	59210994	30	63273										
CNTROB	0	genome.wustl.edu	37	chr17	7847523	7847523	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tcaaggtggaaatggcagaaCgagaggaacggcaacagcag	15	7	1	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	17	7847523	7847523	C	T	SNP	CNTROB	ENST00000380262	human	ensembl	69_37n	1	known	nonsense	c.1528	p.R510*	0.881	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037	33	0	0	25	11	30.56	-	-	-	T	7847523	C	T	7847523	4	4	719	1	0	0	0	0	0	1	0	0	3681	528	19	1	1570	1	CNTROB	17	7847523	Nonsense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		7847523	73347687	31	63274										
MAP2K4	0	genome.wustl.edu	37	chr17	12032481	12032481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gttggccacaggccgatttcCttatccaaagtggaatagtg	11	9	0	0			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	17	12032481	12032481	C	G	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	missense	c.950	p.P317R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	52	0	0	21	19	47.5	-	-	-	G	12032481	C	G	12032481	3	3	719	1	0	0	0	0	1	0	0	0	9310	681	24	4	951	4	MAP2K4	17	12032481	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09	4184958	12032481	69162729	32	63275										
YJEFN3	0	genome.wustl.edu	37	chr19	19645891	19645891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	agcagaggacggtgctggtcGtgtgtggcccggagcagaac	18	9	0	2			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	19645891	19645891	G	A	SNP	YJEFN3	ENST00000514277	human	ensembl	69_37n	1	known	missense	c.367	p.V123M	0.962	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	pfam_YjeF_N,superfamily_YjeF_N,tigrfam_YjeF_N	-	no_errors	YJEFN3	HGNC	ENSG00000250067	59	0	0	46	12	20.69	-	-	-	A	19645891	G	A	19645891	3	1	719	1	0	0	0	0	1	0	0	0	17581	1145	40	1	381	1	YJEFN3	19	19645891	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		19645891	39483092	33	63276										
SHANK1	0	genome.wustl.edu	37	chr19	51217199	51217199	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gtctgggccgccagtgtcaaGggggtctctgaagggcggga	19	9	3	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	51217199	51217199	G	T	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.648	p.P216	0.888	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	35	0	0	31	7	18.42	-	-	-	T	51217199	G	T	51217199	2	4	719	1	0	0	0	0	0	0	0	1	14353	987	35	4		4	SHANK1	19	51217199	Silent	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	31571308	51217199	7911784	34	63277										
KIR3DL3	0	genome.wustl.edu	37	chr19	55246750	55246750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	acacctgcacgttctgattgGgacctcagtggtcatcatcc	9	13	4	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	55246750	55246750	G	T	SNP	KIR3DL3	ENST00000291860	human	ensembl	69_37n	1	known	missense	c.980	p.G327V	0.006	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2	-	no_errors	KIR3DL3	HGNC	ENSG00000242019	745	0	0	573	277	32.59	-	-	-	T	55246750	G	T	55246750	3	4	719	1	0	0	0	0	1	0	0	0	8375	1232	43	4	1002	4	KIR3DL3	19	55246750	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09	4029551	55246750	3882233	35	63278										
DIP2A	0	genome.wustl.edu	37	chr21	47918525	47918525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	tgcctcagaagatgagggctCtttacggcgacccgggcgac	14	12	2	3			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	21	47918525	47918525	C	G	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.434	p.S145C	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	54	0	0	47	24	33.8	-	-	-	G	47918525	C	G	47918525	3	3	719	1	0	0	0	0	1	0	0	0	4563	913	32	2	452	2	DIP2A	21	47918525	Missense_Mutation	SNP	C	TCGA-D8-A1XY-01A-11D-A14K-09		47918525	211370	36	63279										
SLC35A2	0	genome.wustl.edu	37	chrX	48761929	48761929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.162162162162162	6	0.256161634459028	1.94768439108062	2.38050314465409	1.87934458788481	0.102564102564103	0.5224358974359	0	gccaggccccggagggtggcGacttgggtcctgcagatgcc	17	13	0	1			TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	X	48761929	48761929	G	A	SNP	SLC35A2	ENST00000445167	human	ensembl	69_37n	-1	known	missense	c.667	p.R223C	0.000	NULL	pfam_Nuc_sug_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100	43	0	0	44	11	20	-	-	-	A	48761929	G	A	48761929	3	1	719	1	0	0	0	0	1	0	0	0	14660	1058	37	1	97	1	SLC35A2	23	48761929	Missense_Mutation	SNP	G	TCGA-D8-A1XY-01A-11D-A14K-09		48761929	106508631	37	63280										
NPHP4	0	genome.wustl.edu	37	chr1	5927909	5927909	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tggggctgcagctccacagtCaggcagagcacggcgatggg	17	11	1	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	5927909	5927909	C	G	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	silent	c.3363	p.L1121	0.978	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	36	0	0	28	6	17.14	-	-	-	G	5927909	C	G	5927909	2	3	720	1	0	0	0	0	0	0	0	1	10653	813	29	2		2	NPHP4	1	5927909	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		5927909	243322712	1	63281										
RCAN3	0	genome.wustl.edu	37	chr1	24857756	24857756	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	atgatgaccaggttacttttCagctgtttaaaagctttaga	8	6	1	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	24857756	24857756	C	T	SNP	RCAN3	ENST00000374395	human	ensembl	69_37n	1	known	nonsense	c.244	p.Q82*	1.000	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN3	HGNC	ENSG00000117602	64	0	0	47	51	52.04	-	-	-	T	24857756	C	T	24857756	4	4	720	1	0	0	0	0	0	1	0	0	13253	827	29	2	250	2	RCAN3	1	24857756	Nonsense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	18929847	24857756	224392865	2	63282										
SCMH1	0	genome.wustl.edu	37	chr1	41512122	41512122	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tggctgtactctatggcagtGagtgacaagtgagtctgtgt	14	6	2	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	41512122	41512122	G	C	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	silent	c.1425	p.L475	0.388	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	89	0	0	80	23	22.33	-	-	-	C	41512122	G	C	41512122	2	2	720	1	0	0	0	0	0	0	0	1	13996	1277	45	2		2	SCMH1	1	41512122	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	16654366	41512122	207738499	3	63283										
ST3GAL3	0	genome.wustl.edu	37	chr1	44363942	44363942	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ccatcttgtcagtcaccaaaGagtaccgcctgacccctgcc	7	17	3	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	44363942	44363942	G	C	SNP	ST3GAL3	ENST00000262915	human	ensembl	69_37n	1	known	missense	c.640	p.E214Q	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091	83	0	0	81	19	18.81	-	-	-	C	44363942	G	C	44363942	3	2	720	1	0	0	0	0	1	0	0	0	15307	943	33	2	666	2	ST3GAL3	1	44363942	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	2851820	44363942	204886679	4	63284										
VAV3	0	genome.wustl.edu	37	chr1	108507315	108507317	+	In_Frame_Del	DEL	CTC	CTC	-													0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	atctgcggcctcaggttgatCtccttcaggttgatggagtg							TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	108507315	108507317	CTC	-	DEL	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	in_frame_del	c.177_175	p.E59in_frame_del	1.000:1.000:1.000	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215	33	0	0	13	8	38.1	-	-	-	-	108507317	CTC	-	108507315	7	5	720	1	0	1	0	1	0	0	0	0	17230	912	32	0	2499	0	VAV3	1	108507315	In_Frame_Del	DEL	CTC	TCGA-D8-A1XZ-01A-11D-A14K-09	64143373	108507315	140743306	5	63285										
CRB1	0	genome.wustl.edu	37	chr1	197326056	197326056	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tggagctgtcctcagagaaaCaatatggacgcatcactgga	11	9	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	197326056	197326056	C	A	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.1084	p.Q362K	0.070	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	157	0	0	62	40	39.22	-	-	-	A	197326056	C	A	197326056	3	1	720	1	0	0	0	0	1	0	0	0	3878	479	17	4	1102	4	CRB1	1	197326056	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	88818741	197326056	51924565	6	63286										
MARK1	0	genome.wustl.edu	37	chr1	220791767	220791767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ttgtggaagcccaccctatgCtgctcccgagcttttccaag	9	14	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	1	220791767	220791767	C	T	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.668	p.A223V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	107	0	0	40	18	31.03	-	-	-	T	220791767	C	T	220791767	3	4	720	1	0	0	0	0	1	0	0	0	9383	797	28	4	698	4	MARK1	1	220791767	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	23465711	220791767	28458854	7	63287										
THSD7B	0	genome.wustl.edu	37	chr2	138208561	138208561	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aaaaaccttacaatggaggaCgaccatgtcccaaactggat	8	10	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	2	138208561	138208561	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	nonsense	c.3106	p.R1036*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	95	0	0	82	10	10.87	-	-	-	T	138208561	C	T	138208561	4	4	720	1	0	0	0	0	0	1	0	0	15975	528	19	1	3067	1	THSD7B	2	138208561	Nonsense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		138208561	104990812	8	63288										
LRP1B	0	genome.wustl.edu	37	chr2	141081533	141081533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tatttaaagctaagtactctActgaaccatggccaaatttt	5	8	1	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	2	141081533	141081533	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12443	p.V4148A	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	80	0	0	42	20	32.26	-	-	-	G	141081533	A	G	141081533	3	3	720	1	0	0	0	0	1	0	0	0	9021	391	14	5	1400	5	LRP1B	2	141081533	Missense_Mutation	SNP	A	TCGA-D8-A1XZ-01A-11D-A14K-09	2872972	141081533	102117840	9	63289										
ADCY5	0	genome.wustl.edu	37	chr3	123038594	123038594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cagaccgaagcctatcaatgCtcctggcgtcaatggcacgg	11	13	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	3	123038594	123038594	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.2183	p.S728N	1.000	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	76	0	0	29	27	48.21	-	-	-	T	123038594	C	T	123038594	3	4	720	1	0	0	0	0	1	0	0	0	297	797	28	4	1650	4	ADCY5	3	123038594	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		123038594	74983836	10	63290										
RHO	0	genome.wustl.edu	37	chr3	129251571	129251571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cagcgttctttgccaagagcGccgccatctacaaccctgtc	8	16	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	3	129251571	129251571	G	A	SNP	RHO	ENST00000296271	human	ensembl	69_37n	1	known	missense	c.892	p.A298T	0.150	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Rhodopsin,prints_7TM_GPCR_Rhodpsn,prints_Opsin,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	RHO	HGNC	ENSG00000163914	117	0	0	69	14	16.67	-	-	-	A	129251571	G	A	129251571	3	1	720	1	0	0	0	0	1	0	0	0	13414	1087	38	1	906	1	RHO	3	129251571	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	6212977	129251571	68770859	11	63291										
COL6A5	0	genome.wustl.edu	37	chr3	130116894	130116894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gtgctgcttattttttcagaCggtctccagagtgaaagcaa	10	8	2	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	3	130116894	130116894	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.3930	p.D1310	0.998	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	297	0	0	117	43	26.71	-	-	-	T	130116894	C	T	130116894	2	4	720	1	0	0	0	0	0	0	0	1	3732	535	19	1		1	COL6A5	3	130116894	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	865323	130116894	67905536	12	63292										
FAM13A	0	genome.wustl.edu	37	chr4	89671660	89671660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ctgcccataagcgtagaaccGaggagagagcatggggtcgc	15	10	0	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	4	89671660	89671660	G	A	SNP	FAM13A	ENST00000264344	human	ensembl	69_37n	-1	known	missense	c.1855	p.R619W	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	101	0	0	39	35	47.3	-	-	-	A	89671660	G	A	89671660	3	1	720	1	0	0	0	0	1	0	0	0	5492	1057	37	1	1256	1	FAM13A	4	89671660	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		89671660	101482616	13	63293										
CDH9	0	genome.wustl.edu	37	chr5	26881405	26881405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cattcccttcataggcatacGttgccagcgaatcatatgga	8	11	2	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	5	26881405	26881405	G	A	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.2210	p.T737M	0.999	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	131	0	0	90	41	31.3	-	-	-	A	26881405	G	A	26881405	3	1	720	1	0	0	0	0	1	0	0	0	3146	1145	40	1	163	1	CDH9	5	26881405	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		26881405	154033855	14	63294										
HSPA1L	0	genome.wustl.edu	37	chr6	31778018	31778018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ctccagccacgaaaggagctCgttgcatttatccaatattt	7	11	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	6	31778018	31778018	C	G	SNP	HSPA1L	ENST00000375654	human	ensembl	69_37n	-1	known	missense	c.1732	p.E578Q	0.998	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390	71	0	0	70	20	22.22	-	-	-	G	31778018	C	G	31778018	3	3	720	1	0	0	0	0	1	0	0	0	7463	893	31	3	197	3	HSPA1L	6	31778018	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		31778018	139337049	15	63295										
LRRC1	0	genome.wustl.edu	37	chr6	53784398	53784398	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	acattccagacagacacagaCtacaccacaggagagaagat	8	11	0	5			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	6	53784398	53784398	C	T	SNP	LRRC1	ENST00000370888	human	ensembl	69_37n	1	known	silent	c.1209	p.D403	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269	134	0	0	97	34	25.95	-	-	-	T	53784398	C	T	53784398	2	4	720	1	0	0	0	0	0	0	0	1	9032	564	20	4		4	LRRC1	6	53784398	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	22006380	53784398	117330669	16	63296										
MTO1	0	genome.wustl.edu	37	chr6	74171766	74171766	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cggtgcggctctcggactctGctcctcactcaccgcgtgga	12	16	4	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	6	74171766	74171766	G	T	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	silent	c.189	p.L63	1.000	pfam_GIDA-rel,pfam_FAD_bind_dom,tigrfam_GidA	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	13	0	0	24	9	26.47	-	-	-	T	74171766	G	T	74171766	2	4	720	1	0	0	0	0	0	0	0	1	10025	1306	46	4		4	MTO1	6	74171766	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	20387368	74171766	96943301	17	63297										
LCA5	0	genome.wustl.edu	37	chr6	80198927	80198927	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cctgtcttgcttttgagattGcaagtcctattatacgttaa	7	8	1	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	6	80198927	80198927	G	A	SNP	LCA5	ENST00000369846	human	ensembl	69_37n	-1	known	nonsense	c.1105	p.Q369*	0.008	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338	230	0	0	171	39	18.57	-	-	-	A	80198927	G	A	80198927	4	1	720	1	0	0	0	0	0	1	0	0	8710	1328	46	4	996	4	LCA5	6	80198927	Nonsense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	6027161	80198927	90916140	18	63298										
ZBTB2	0	genome.wustl.edu	37	chr6	151687962	151687962	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gcgccatcttcccagtgtacAtcaagtgtaagagatagctg	10	10	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	6	151687962	151687962	A	T	SNP	ZBTB2	ENST00000325144	human	ensembl	69_37n	-1	known	missense	c.239	p.M80K	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472	22	0	0	18	15	44.12	-	-	-	T	151687962	A	T	151687962	3	4	720	1	0	0	0	0	1	0	0	0	17624	217	8	5	1309	5	ZBTB2	6	151687962	Missense_Mutation	SNP	A	TCGA-D8-A1XZ-01A-11D-A14K-09	71489035	151687962	19427105	19	63299										
AMPH	0	genome.wustl.edu	37	chr7	38431512	38431512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tggtggggcccggaggagccGcgtcctcggtggtctccttg	18	12	1	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	7	38431512	38431512	G	A	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	missense	c.1715	p.A572V	0.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	42	0	0	27	14	34.15	-	-	-	A	38431512	G	A	38431512	3	1	720	1	0	0	0	0	1	0	0	0	588	1087	38	1	384	1	AMPH	7	38431512	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		38431512	120707151	20	63300										
CNTLN	0	genome.wustl.edu	37	chr9	17484353	17484353	+	Frame_Shift_Del	DEL	A	A	-													0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ggcgacaaataagagagcttAaaaaaatgaagaaaaacagg							TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	9	17484353	17484353	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	frame_shift_del	c.3916	p.M1308fs	0.999	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	90	0	0	48	12	19.35	-	-	-	-	17484353	A	-	17484353	7	5	720	1	0	1	0	1	0	0	0	0	3669	363	13	0	4040	0	CNTLN	9	17484353	Frame_Shift_Del	DEL	A	TCGA-D8-A1XZ-01A-11D-A14K-09		17484353	123729078	21	63301										
GOLM1	0	genome.wustl.edu	37	chr9	88694123	88694123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	acacctggaggtccacgctcCgggagctcgcaatccagtag	12	14	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	9	88694123	88694123	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	69_37n	-1	known	missense	c.113	p.R38Q	1.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052	31	0	0	22	6	21.43	-	-	-	T	88694123	C	T	88694123	3	4	720	1	0	0	0	0	1	0	0	0	6616	652	23	1	1128	1	GOLM1	9	88694123	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	71209770	88694123	52519308	22	63302										
ZEB1	0	genome.wustl.edu	37	chr10	31809597	31809597	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	caaagaacaagaaacaatcaAtgcttcacccatacaacaag	4	11	2	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	10	31809597	31809597	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	missense	c.1337	p.N446S	0.287	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	52	0	0	17	17	50	-	-	-	G	31809597	A	G	31809597	3	3	720	1	0	0	0	0	1	0	0	0	17719	101	4	5	1374	5	ZEB1	10	31809597	Missense_Mutation	SNP	A	TCGA-D8-A1XZ-01A-11D-A14K-09		31809597	103725150	23	63303										
TRPC6	0	genome.wustl.edu	37	chr11	101359736	101359736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aatggcaacagcaaggaccaCaaggaacttgaccgccattg	10	11	0	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	11	101359736	101359736	C	T	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.1225	p.V409M	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	56	0	0	21	5	19.23	-	-	-	T	101359736	C	T	101359736	3	4	720	1	0	0	0	0	1	0	0	0	16679	478	17	4	1610	4	TRPC6	11	101359736	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		101359736	33646780	24	63304										
GRIN2B	0	genome.wustl.edu	37	chr12	13768551	13768551	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	taaggatgtcaatacagaacCccttgcagcattttttgatg	8	8	1	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	12	13768551	13768551	C	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1376	p.G459V	1.000	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	103	0	0	61	62	49.21	-	-	-	A	13768551	C	A	13768551	3	1	720	1	0	0	0	0	1	0	0	0	6831	623	22	4	3110	4	GRIN2B	12	13768551	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		13768551	120083344	25	63305										
LUM	0	genome.wustl.edu	37	chr12	91502039	91502039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tattccactatcagccagttCgttgtgagataaacgcagat	8	9	1	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	12	91502039	91502039	C	T	SNP	LUM	ENST00000266718	human	ensembl	69_37n	-1	known	missense	c.718	p.E240K	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329	165	0	0	106	51	32.48	-	-	-	T	91502039	C	T	91502039	3	4	720	1	0	0	0	0	1	0	0	0	9151	893	31	1	306	1	LUM	12	91502039	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	77733488	91502039	42349856	26	63306										
CCDC60	0	genome.wustl.edu	37	chr12	119937943	119937943	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aaggacaagtccatgggacaGaaatgggagcatttcatcac	11	8	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	12	119937943	119937943	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	silent	c.618	p.Q206	1.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	79	0	0	38	11	22.45	-	-	-	A	119937943	G	A	119937943	2	1	720	1	0	0	0	0	0	0	0	1	2858	933	33	2		2	CCDC60	12	119937943	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	28435904	119937943	13913952	27	63307										
CIT	0	genome.wustl.edu	37	chr12	120287989	120287989	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aagactcaccagataaaggtGatttttgtcctgaaaggcat	9	7	1	4			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	12	120287989	120287989	G	T	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.505	p.H169N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Citron_Rho-interacting_kinase,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	121	1	0.82	50	31	38.27	-	-	-	T	120287989	G	T	120287989	3	4	720	1	0	0	0	0	1	0	0	0	3468	1290	45	2	5750	2	CIT	12	120287989	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	350046	120287989	13563906	28	63308										
HSPH1	0	genome.wustl.edu	37	chr13	31722195	31722195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ggtgagaactttggagaaagGagcagcatggtttcgactaa	14	5	0	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	13	31722195	31722195	G	A	SNP	HSPH1	ENST00000445273	human	ensembl	69_37n	-1	known	missense	c.1285	p.P429S	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694	92	0	0	47	23	32.86	-	-	-	A	31722195	G	A	31722195	3	1	720	1	0	0	0	0	1	0	0	0	7485	1174	41	2	1333	2	HSPH1	13	31722195	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		31722195	83447683	29	63309										
DIAPH3	0	genome.wustl.edu	37	chr13	60348934	60348934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	caaggcctccagcagattatCcatcactcctgtctcatcac	5	16	3	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	13	60348934	60348934	C	T	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	missense	c.3187	p.D1063N	1.000	pfam_Drf_DAD,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	106	0	0	55	36	39.56	-	-	-	T	60348934	C	T	60348934	3	4	720	1	0	0	0	0	1	0	0	0	4556	855	30	2	426	2	DIAPH3	13	60348934	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	28626739	60348934	54820944	30	63310										
TMCO3	0	genome.wustl.edu	37	chr13	114150035	114150035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gggtggctgccatgcagagcCggcagtgggtccgggacagc	19	11	0	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	13	114150035	114150035	C	T	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	missense	c.139	p.R47W	0.016	NULL	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	42	0	0	15	15	50	-	-	-	T	114150035	C	T	114150035	3	4	720	1	0	0	0	0	1	0	0	0	16092	643	23	1	141	1	TMCO3	13	114150035	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	53801101	114150035	1019843	31	63311										
ADCY4	0	genome.wustl.edu	37	chr14	24788604	24788604	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	taggtgctgccgatggtcttGatcttctccaccccactgaa	9	13	3	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	14	24788604	24788604	G	C	SNP	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	missense	c.2772	p.I924M	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	174	0	0	188	31	14.16	-	-	-	C	24788604	G	C	24788604	3	2	720	1	0	0	0	0	1	0	0	0	296	1280	45	2	477	2	ADCY4	14	24788604	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		24788604	82560936	32	63312										
PTPN21	0	genome.wustl.edu	37	chr14	88962792	88962792	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	agtctgtaaaacttgtgtcgCgcaacacagagtctccaaat	8	10	2	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	14	88962792	88962792	C	T	SNP	PTPN21	ENST00000328736	human	ensembl	69_37n	-1	known	silent	c.897	p.A299	0.121	pfam_FERM_PH-like_C,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778	80	0	0	42	8	15.69	-	-	-	T	88962792	C	T	88962792	2	4	720	1	0	0	0	0	0	0	0	1	12869	755	27	1		1	PTPN21	14	88962792	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	64174188	88962792	18386748	33	63313										
RTL1	0	genome.wustl.edu	37	chr14	101349520	101349520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aatgcatggcgggggcgggcGgaagcagttcttcaggcagt	18	8	2	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	14	101349520	101349520	G	A	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.1606	p.R536C	0.988	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	51	0	0	5	12	70.59	-	-	-	A	101349520	G	A	101349520	3	1	720	1	0	0	0	0	1	0	0	0	13810	1116	39	1	2474	1	RTL1	14	101349520	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	12386728	101349520	6000020	34	63314										
TRPM1	0	genome.wustl.edu	37	chr15	31334372	31334372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aaccgactcacggcagggtcGtccacatcaatgtcgatctc	9	14	3	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	15	31334372	31334372	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	silent	c.1920	p.D640	0.903	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	72	0	0	35	6	14.63	-	-	-	A	31334372	G	A	31334372	2	1	720	1	0	0	0	0	0	0	0	1	16681	1136	40	1		1	TRPM1	15	31334372	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		31334372	71197020	35	63315										
ITGAX	0	genome.wustl.edu	37	chr16	31391336	31391336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ggtgctcctcagagaaaatcGcacccccagcatctgacttc	8	15	2	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	16	31391336	31391336	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.3010	p.A1004T	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	38	0	0	27	5	15.62	-	-	-	A	31391336	G	A	31391336	3	1	720	1	0	0	0	0	1	0	0	0	7943	1087	38	1	3112	1	ITGAX	16	31391336	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		31391336	58963417	36	63316										
ZNF423	0	genome.wustl.edu	37	chr16	49669753	49669753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gggcggggccaggccacccaCctgtccgttggcgctgcggg	18	15	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	16	49669753	49669753	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.3310	p.V1104M	0.981	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	14	0	0	15	7	31.82	-	-	-	T	49669753	C	T	49669753	3	4	720	1	0	0	0	0	1	0	0	0	17994	507	18	4	564	4	ZNF423	16	49669753	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	18278417	49669753	40685000	37	63317										
TP53	0	genome.wustl.edu	37	chr17	7578431	7578431	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cacaacctccgtcatgtgctGtgactgcttgtagatggcca	10	12	1	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	17	7578431	7578431	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.499	p.Q167*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	50	0	0	6	16	72.73	-	-	-	A	7578431	G	A	7578431	4	1	720	1	0	0	0	0	0	1	0	0	16477	1386	48	4	799	4	TP53	17	7578431	Nonsense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		7578431	73616779	38	63318										
FAM83G	0	genome.wustl.edu	37	chr17	18881643	18881643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ggtgtcacggatcttgatgcGgttcatctggctgggctggg	17	8	4	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	17	18881643	18881643	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	69_37n	-1	known	missense	c.1336	p.R446C	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	47	0	0	10	15	60	-	-	-	A	18881643	G	A	18881643	3	1	720	1	0	0	0	0	1	0	0	0	5684	1116	39	1	1143	1	FAM83G	17	18881643	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	11303212	18881643	62313567	39	63319										
HSD17B1	0	genome.wustl.edu	37	chr17	40706477	40706477	+	Frame_Shift_Del	DEL	G	G	-													0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gccttcatggagaaggtgttGggcagcccagaggaggtgct							TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	17	40706477	40706477	G	-	DEL	HSD17B1	ENST00000585807	human	ensembl	69_37n	1	known	frame_shift_del	c.594	p.G199fs	0.239	pirsf_17beta_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B1	HGNC	ENSG00000108786	29	0	0	10	2	16.67	-	-	-	-	40706477	G	-	40706477	7	5	720	1	0	1	0	1	0	0	0	0	7429	1339	47	0	612	0	HSD17B1	17	40706477	Frame_Shift_Del	DEL	G	TCGA-D8-A1XZ-01A-11D-A14K-09	21824834	40706477	40488733	40	63320										
PPM1E	0	genome.wustl.edu	37	chr17	56833490	56833490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gaacccgaacccgaacccgaGtccgagcccgagcccgaacc	10	19	0	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	17	56833490	56833490	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	silent	c.132	p.E44	0.898	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	21	0	0	13	5	27.78	-	-	-	A	56833490	G	A	56833490	2	1	720	1	0	0	0	0	0	0	0	1	12415	1020	36	4		4	PPM1E	17	56833490	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	16127013	56833490	24361720	41	63321										
TUBB6	0	genome.wustl.edu	37	chr18	12325960	12325960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gttctcagccatgttccggcGcaaggccttcctgcactggt	11	14	1	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	18	12325960	12325960	G	A	SNP	TUBB6	ENST00000317702	human	ensembl	69_37n	1	known	missense	c.1172	p.R391H	1.000	superfamily_Tub_FtsZ_C,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014	61	0	0	29	5	14.71	-	-	-	A	12325960	G	A	12325960	3	1	720	1	0	0	0	0	1	0	0	0	16857	1087	38	1	1186	1	TUBB6	18	12325960	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		12325960	65751288	42	63322										
CDH20	0	genome.wustl.edu	37	chr18	59221741	59221741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cgacatggacctgtgggcacCgcccttcgactccctccaga	10	17	0	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	18	59221741	59221741	C	T	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.2219	p.P740L	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	15	0	0	14	5	26.32	-	-	-	T	59221741	C	T	59221741	3	4	720	1	0	0	0	0	1	0	0	0	3135	652	23	1	2261	1	CDH20	18	59221741	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	46895781	59221741	18855507	43	63323										
CC2D1A	0	genome.wustl.edu	37	chr19	14031724	14031724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cgcgcaatgggctgcctgtgGacatcaccaaggtgaacctt	12	12	1	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	19	14031724	14031724	G	C	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1630	p.D544H	1.000	smart_DM14	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	35	0	0	29	7	18.92	-	-	-	C	14031724	G	C	14031724	3	2	720	1	0	0	0	0	1	0	0	0	2751	1174	41	2	1684	2	CC2D1A	19	14031724	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		14031724	45097259	44	63324										
RBM12	0	genome.wustl.edu	37	chr20	34242060	34242060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	tgagtttgtccagaaggtccCatattttgcttaaaagtgat	9	6	0	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	20	34242060	34242060	C	T	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	missense	c.1185	p.M395I	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	110	0	0	99	15	13.16	-	-	-	T	34242060	C	T	34242060	3	4	720	1	0	0	0	0	1	0	0	0	13196	594	21	4	1617	4	RBM12	20	34242060	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		34242060	28783460	45	63325										
KCNB1	0	genome.wustl.edu	37	chr20	47990860	47990860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gaactcagagaagttattgaCgatgatggggatgggaagag	16	3	1	4			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	20	47990860	47990860	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.1237	p.V413I	1.000	pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	61	0	0	20	14	41.18	-	-	-	T	47990860	C	T	47990860	3	4	720	1	0	0	0	0	1	0	0	0	8066	536	19	1	1343	1	KCNB1	20	47990860	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	13748800	47990860	15034660	46	63326										
SF3A1	0	genome.wustl.edu	37	chr22	30733776	30733776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ctgggcgcgtggatgatgggCggcatgggggcgatcactga	20	8	1	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	22	30733776	30733776	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	69_37n	-1	known	silent	c.1854	p.P618	0.043	NULL	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin,superfamily_Surp,smart_Surp,smart_Ubiquitin,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995	38	0	0	23	12	34.29	-	-	-	T	30733776	C	T	30733776	2	4	720	1	0	0	0	0	0	0	0	1	14234	755	27	1		1	SF3A1	22	30733776	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09		30733776	20570790	47	63327										
TRIOBP	0	genome.wustl.edu	37	chr22	38130806	38130806	+	Frame_Shift_Del	DEL	G	G	-													0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	cagggagtacaaggagagctGggggcagccagaggcctggg							TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	22	38130806	38130806	G	-	DEL	TRIOBP	ENST00000406386	human	ensembl	69_37n	1	known	frame_shift_del	c.4463	p.Q1490fs	0.191	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	12	0	0	4	2	33.33	-	-	-	-	38130806	G	-	38130806	7	5	720	1	0	1	0	1	0	0	0	0	16649	1357	47	0	4489	0	TRIOBP	22	38130806	Frame_Shift_Del	DEL	G	TCGA-D8-A1XZ-01A-11D-A14K-09	7397030	38130806	13173760	48	63328										
EP300	0	genome.wustl.edu	37	chr22	41523564	41523564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	ccaagggatgggttctggagCacatacagctgatccagaga	13	9	1	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	22	41523564	41523564	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.980	p.A327V	0.998	superfamily_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	50	0	0	20	7	25.93	-	-	-	T	41523564	C	T	41523564	3	4	720	1	0	0	0	0	1	0	0	0	5185	710	25	4	994	4	EP300	22	41523564	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	3392758	41523564	9781002	49	63329										
NHS	0	genome.wustl.edu	37	chrX	17744275	17744275	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gaggatgccagtgttttcgtGacagagcaatacaatgacca	11	8	0	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	17744275	17744275	G	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.1986	p.V662	0.627	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	70	0	0	49	8	14.04	-	-	-	C	17744275	G	C	17744275	2	2	720	1	0	0	0	0	0	0	0	1	10483	1277	45	2		2	NHS	23	17744275	Silent	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09		17744275	137526285	50	63330										
USP9X	0	genome.wustl.edu	37	chrX	41012240	41012240	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	catgtgttttatcgccatgaCttaatcaatcaacttcaaca	4	10	3	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	41012240	41012240	C	T	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	silent	c.1803	p.D601	0.984	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	283	0	0	241	59	19.67	-	-	-	T	41012240	C	T	41012240	2	4	720	1	0	0	0	0	0	0	0	1	17187	564	20	4		4	USP9X	23	41012240	Silent	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	23267965	41012240	114258320	51	63331										
ACRC	0	genome.wustl.edu	37	chrX	70832732	70832732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	gattggctgctacaccaaatCgttggacaccagccgcttca	9	13	1	0			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	70832732	70832732	C	T	SNP	ACRC	ENST00000373695	human	ensembl	69_37n	1	known	missense	c.1976	p.S659L	0.987	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174	111	0	0	79	21	20.79	-	-	-	T	70832732	C	T	70832732	3	4	720	1	0	0	0	0	1	0	0	0	171	893	31	1	2022	1	ACRC	23	70832732	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	29820492	70832732	84437828	52	63332										
TBX22	0	genome.wustl.edu	37	chrX	79278719	79278719	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	catgacatcgggactgagatGatcattactaaagcgggcag	12	8	1	3			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	79278719	79278719	G	T	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	missense	c.336	p.M112I	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	71	0	0	47	20	29.85	-	-	-	T	79278719	G	T	79278719	3	4	720	1	0	0	0	0	1	0	0	0	15753	1290	45	2	342	2	TBX22	23	79278719	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	8445987	79278719	75991841	53	63333										
CXorf57	0	genome.wustl.edu	37	chrX	105855472	105855472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	aaggttcttgagcagattatGgactcacctcgccagtgtgt	11	9	2	2			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	105855472	105855472	G	A	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.162	p.M54I	0.000	superfamily_NA-bd_OB-fold-like	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	77	0	0	47	14	22.95	-	-	-	A	105855472	G	A	105855472	3	1	720	1	0	0	0	0	1	0	0	0	4144	1348	47	4	164	4	CXorf57	23	105855472	Missense_Mutation	SNP	G	TCGA-D8-A1XZ-01A-11D-A14K-09	26576753	105855472	49415088	54	63334										
AVPR2	0	genome.wustl.edu	37	chrX	153171699	153171699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.606112594578808	1.30586450960566	5.72981366459627	0.445652173913043	0.334841628959276	0.930327025915261	0	catcagagaggcctggggggCgccgcaggggacgccggaca	19	12	1	1			TCGA-D8-A1XZ-01A-11D-A14K-09	TCGA-D8-A1XZ-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	381a9211-1f2b-4c14-895b-ee7fb6eb8c7f	1f6f5abe-614f-4f57-930c-e0ea2384cde6	X	153171699	153171699	C	T	SNP	AVPR2	ENST00000337474	human	ensembl	69_37n	1	known	missense	c.739	p.R247C	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vprsn_rcpt_V2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895	82	0	0	44	25	34.72	-	-	-	T	153171699	C	T	153171699	3	4	720	1	0	0	0	0	1	0	0	0	1237	768	27	1	745	1	AVPR2	23	153171699	Missense_Mutation	SNP	C	TCGA-D8-A1XZ-01A-11D-A14K-09	47316227	153171699	2098861	55	63335										
UBE4B	0	genome.wustl.edu	37	chr1	10163139	10163139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ttctgcacagtttaagcagaAcccaaaagaaggtaggaatc	9	8	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	10163139	10163139	A	G	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.569	p.N190S	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	66	0	0	11	6	35.29	-	-	-	G	10163139	A	G	10163139	3	3	721	1	0	0	0	0	1	0	0	0	16980	43	2	5	587	5	UBE4B	1	10163139	Missense_Mutation	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09		10163139	239087482	1	63336										
MTOR	0	genome.wustl.edu	37	chr1	11187116	11187116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	acacatgataatagaggtccCaggcttgggtgaggtccttg	13	8	0	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	11187116	11187116	C	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.6302	p.W2101L	1.000	pfam_FKBP_rapamycin-assoc_FKBP12-bd,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	100	0	0	27	17	38.64	-	-	-	A	11187116	C	A	11187116	3	1	721	1	0	0	0	0	1	0	0	0	10026	595	21	4	1403	4	MTOR	1	11187116	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	1023977	11187116	238063505	2	63337										
HIVEP3	0	genome.wustl.edu	37	chr1	42049672	42049672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	actcttccccagggatccgcTccatctccagcccatgtggg	9	17	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	42049672	42049672	T	C	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.797	p.E266G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	58	0	0	23	11	32.35	-	-	-	C	42049672	T	C	42049672	3	2	721	1	0	0	0	0	1	0	0	0	7239	1551	54	5	6447	5	HIVEP3	1	42049672	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	30862556	42049672	207200949	3	63338										
MTF2	0	genome.wustl.edu	37	chr1	93602437	93602437	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gcagatcaggagttacaactCaatcatctaaagaactccat	6	10	4	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	93602437	93602437	C	G	SNP	MTF2	ENST00000370298	human	ensembl	69_37n	1	known	silent	c.1635	p.L545	0.762	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	65	0	0	31	11	26.19	-	-	-	G	93602437	C	G	93602437	2	3	721	1	0	0	0	0	0	0	0	1	9995	813	29	2		2	MTF2	1	93602437	Silent	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	51552765	93602437	155648184	4	63339										
GSTM4	0	genome.wustl.edu	37	chr1	110201636	110201636	+	Missense_Mutation	SNP	T	T	G													0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ctgcagatcacctttgtagaTttcctcgcctatgatgtcct							TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	110201636	110201636	T	G	SNP	GSTM4	ENST00000369836	human	ensembl	69_37n	1	known	missense	c.471	p.D157E	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM4	HGNC	ENSG00000168765	175	0	0	61	16	20.78	-	-	-	G	110201636	T	G	110201636	3	3	721	1	0	0	0	0	1	0	0	0	6891	1490	52	5	497	5	GSTM4	1	110201636	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	16599199	110201636	139048985	5	63340	465	2								
GSTM4	0	genome.wustl.edu	37	chr1	110201637	110201637	+	Missense_Mutation	SNP	T	T	A													0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tgcagatcacctttgtagatTtcctcgcctatgatgtcctt							TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	110201637	110201637	T	A	SNP	GSTM4	ENST00000369836	human	ensembl	69_37n	1	known	missense	c.472	p.F158I	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM4	HGNC	ENSG00000168765	175	0	0	62	14	18.42	-	-	-	A	110201637	T	A	110201637	3	1	721	1	0	0	0	0	1	0	0	0	6891	1841	64	5	498	5	GSTM4	1	110201637	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	1	110201637	139048984	6	63341	465	2								
LRIG2	0	genome.wustl.edu	37	chr1	113616189	113616189	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ctcctgccgcattcctctccTggactgcagtcgcaggaaat	9	15	1	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	113616189	113616189	T	A	SNP	LRIG2	ENST00000361127	human	ensembl	69_37n	1	known	missense	c.161	p.L54Q	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	32	0	0	22	8	26.67	-	-	-	A	113616189	T	A	113616189	3	1	721	1	0	0	0	0	1	0	0	0	9011	1580	55	5	163	5	LRIG2	1	113616189	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	3414552	113616189	135634432	7	63342										
PDE4DIP	0	genome.wustl.edu	37	chr1	145075854	145075854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cagcaggacccgctgtctgtGcccttcatggatttcctggg	12	13	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	145075854	145075854	G	C	SNP	PDE4DIP	ENST00000369348	human	ensembl	69_37n	-1	known	silent	c.9	p.G3	0.048	NULL	pfam_Spindle_assoc	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	11	0	0	28	23	45.1	-	-	-	C	145075854	G	C	145075854	2	2	721	1	0	0	0	0	0	0	0	1	11716	1306	46	4		4	PDE4DIP	1	145075854	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	31459665	145075854	104174767	8	63343										
CACNA1E	0	genome.wustl.edu	37	chr1	181685255	181685255	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gatgagcactgtgttgatatCtcctctgtgggtgagtggat	14	6	2	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	181685255	181685255	C	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	silent	c.1305	p.I435	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	79	0	0	33	13	28.26	-	-	-	A	181685255	C	A	181685255	2	1	721	1	0	0	0	0	0	0	0	1	2567	903	32	2		2	CACNA1E	1	181685255	Silent	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	36609401	181685255	67565366	9	63344										
KIF26B	0	genome.wustl.edu	37	chr1	245851145	245851145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cctcagcacagtgccagcggCagcggcaccagcagccccct	11	19	1	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	245851145	245851145	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.4860	p.G1620	0.988	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	12	0	0	27	7	20.59	-	-	-	T	245851145	C	T	245851145	2	4	721	1	0	0	0	0	0	0	0	1	8347	697	25	4		4	KIF26B	1	245851145	Silent	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	64165890	245851145	3399476	10	63345										
OTOF	0	genome.wustl.edu	37	chr2	26739336	26739336	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gagctgggccgggagcctggGagcagtccatccgtctcttg	16	12	1	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	26739336	26739336	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	silent	c.459	p.L153	0.839	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	43	0	0	23	13	36.11	-	-	-	A	26739336	G	A	26739336	2	1	721	1	0	0	0	0	0	0	0	1	11376	1161	41	2		2	OTOF	2	26739336	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		26739336	216460037	11	63346										
GFPT1	0	genome.wustl.edu	37	chr2	69569326	69569326	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gttccacaagcaataagaatCaaacgccggcatctctggat	8	11	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	69569326	69569326	C	G	SNP	GFPT1	ENST00000357308	human	ensembl	69_37n	-1	known	missense	c.1161	p.L387F	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380	87	0	0	36	13	26.53	-	-	-	G	69569326	C	G	69569326	3	3	721	1	0	0	0	0	1	0	0	0	6397	825	29	2	970	2	GFPT1	2	69569326	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	42829990	69569326	173630047	12	63347										
PLCL1	0	genome.wustl.edu	37	chr2	198950898	198950898	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tcttaaaaccattgatgacaTctttaaaatagcggttcatc	5	8	3	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	198950898	198950898	T	A	SNP	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	missense	c.2657	p.I886N	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	51	0	0	17	6	26.09	-	-	-	A	198950898	T	A	198950898	3	1	721	1	0	0	0	0	1	0	0	0	12113	1435	50	5	2663	5	PLCL1	2	198950898	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	129381572	198950898	44248475	13	63348										
NUP210	0	genome.wustl.edu	37	chr3	13364839	13364839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	agagcttctgtctcccacggCaacaatcactttggaggctg	10	12	3	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	13364839	13364839	C	T	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	missense	c.4738	p.A1580T	0.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	79	0	0	36	9	20	-	-	-	T	13364839	C	T	13364839	3	4	721	1	0	0	0	0	1	0	0	0	10833	710	25	4	953	4	NUP210	3	13364839	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09		13364839	184657591	14	63349										
PDCD6IP	0	genome.wustl.edu	37	chr3	33895477	33895477	+	Frame_Shift_Del	DEL	T	T	-													0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	atatgacaactttgttgaacTtgtagctaatttgaaggaag							TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	33895477	33895477	T	-	DEL	PDCD6IP	ENST00000457054	human	ensembl	69_37n	1	known	frame_shift_del	c.2012	p.V672fs	1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	59	0	0	18	2	10	-	-	-	-	33895477	T	-	33895477	7	5	721	1	0	1	0	1	0	0	0	0	11697	1609	56	0	2066	0	PDCD6IP	3	33895477	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y0-01A-11D-A14K-09	20530638	33895477	164126953	15	63350										
ZNF619	0	genome.wustl.edu	37	chr3	40528692	40528692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gagttcacactaatgagaagCcctacacatgcaaagaatgt	8	9	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	40528692	40528692	C	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	missense	c.811	p.P271S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	48	0	0	11	6	35.29	-	-	-	T	40528692	C	T	40528692	3	4	721	1	0	0	0	0	1	0	0	0	18139	739	26	4	851	4	ZNF619	3	40528692	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	6633215	40528692	157493738	16	63351										
DCP1A	0	genome.wustl.edu	37	chr3	53326791	53326791	+	RNA	DEL	G	G	-													0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cagacccacaactgctggttGttcctttggcaaagaggttc							TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	53326791	53326791	G	-	DEL	DCP1A	ENST00000294241	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCP1A	HGNC	ENSG00000162290	44	0	0	12	2	14.29	-	-	-	-	53326791	G	-	53326791	6	5	721	0	1	1	0	1	0	0	0	0	4329	1386	48	0		0	DCP1A	3	53326791	RNA	DEL	G	TCGA-D8-A1Y0-01A-11D-A14K-09	12798099	53326791	144695639	17	63352										
ZNF518B	0	genome.wustl.edu	37	chr4	10446040	10446040	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tttcagatccagagctcagaGaaaatactgatgagatgact	9	7	2	6			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	10446040	10446040	G	C	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.1913	p.S638C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	76	0	0	26	12	31.58	-	-	-	C	10446040	G	C	10446040	3	2	721	1	0	0	0	0	1	0	0	0	18059	942	33	2	1315	2	ZNF518B	4	10446040	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		10446040	180708236	18	63353										
SPATA18	0	genome.wustl.edu	37	chr4	52951104	52951104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gaattcggtgcgatctgtaaGtcgttgtcgaagcaggagtt	14	6	1	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	52951104	52951104	G	T	SNP	SPATA18	ENST00000295213	human	ensembl	69_37n	1	known	missense	c.1502	p.S501I	0.611	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	76	0	0	39	12	23.53	-	-	-	T	52951104	G	T	52951104	3	4	721	1	0	0	0	0	1	0	0	0	15094	1029	36	4	1544	4	SPATA18	4	52951104	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	42505064	52951104	138203172	19	63354										
ADH5	0	genome.wustl.edu	37	chr4	100003129	100003129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tcaagtattctccttacccgCcttcagcttagtaactccct	4	15	3	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	100003129	100003129	C	T	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	missense	c.253	p.A85T	0.725	pfam_ADH_GroES-like,superfamily_GroES-like,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	116	0	0	44	19	30.16	-	-	-	T	100003129	C	T	100003129	3	4	721	1	0	0	0	0	1	0	0	0	311	739	26	4	899	4	ADH5	4	100003129	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	47052025	100003129	91151147	20	63355										
USP53	0	genome.wustl.edu	37	chr4	120213924	120213924	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	accaccccctttgccaccaaAgaaatatgctataaccagtg	5	14	0	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	120213924	120213924	A	T	SNP	USP53	ENST00000274030	human	ensembl	69_37n	1	known	missense	c.2780	p.K927M	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	54	0	0	19	6	24	-	-	-	T	120213924	A	T	120213924	3	4	721	1	0	0	0	0	1	0	0	0	17181	72	3	5	2838	5	USP53	4	120213924	Missense_Mutation	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09	20210795	120213924	70940352	21	63356										
SORBS2	0	genome.wustl.edu	37	chr4	186545132	186545132	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tgtgctgctgctcgctctcgTactgcagaatcctggacttc	10	13	1	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	186545132	186545132	T	C	SNP	SORBS2	ENST00000284776	human	ensembl	69_37n	-1	known	missense	c.1439	p.Y480C	0.995	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	43	0	0	32	9	21.95	-	-	-	C	186545132	T	C	186545132	3	2	721	1	0	0	0	0	1	0	0	0	15017	1638	57	5	1899	5	SORBS2	4	186545132	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	66331208	186545132	4609144	22	63357										
SLC1A3	0	genome.wustl.edu	37	chr5	36608580	36608580	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ggggcaggatggagagattcCagcagggagtccgtaaacgc	17	8	0	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	36608580	36608580	C	T	SNP	SLC1A3	ENST00000265113	human	ensembl	69_37n	1	known	nonsense	c.55	p.Q19*	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	56	0	0	42	11	20.75	-	-	-	T	36608580	C	T	36608580	4	4	721	1	0	0	0	0	0	1	0	0	14522	595	21	4	57	4	SLC1A3	5	36608580	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09		36608580	144306680	23	63358										
ELL2	0	genome.wustl.edu	37	chr5	95242412	95242412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	aattgtatttgcagggttcaTgggggttgaccttttcctct	11	7	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	95242412	95242412	T	C	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.556	p.M186V	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	118	0	0	30	30	50	-	-	-	C	95242412	T	C	95242412	3	2	721	1	0	0	0	0	1	0	0	0	5100	1464	51	5	1398	5	ELL2	5	95242412	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	58633832	95242412	85672848	24	63359										
SEC24A	0	genome.wustl.edu	37	chr5	133997101	133997101	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	agtagctttcttcctgaagcCaacctgccaccacctttgaa	6	14	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	133997101	133997101	C	A	SNP	SEC24A	ENST00000398844	human	ensembl	69_37n	1	known	silent	c.390	p.A130	0.004	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	90	0	0	50	31	38.27	-	-	-	A	133997101	C	A	133997101	2	1	721	1	0	0	0	0	0	0	0	1	14082	581	21	4		4	SEC24A	5	133997101	Silent	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	38754689	133997101	46918159	25	63360										
PCDHA9	0	genome.wustl.edu	37	chr5	140230345	140230345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tcgtactcgcagcagaggagGcagagggtgtgctctggcga	17	9	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	140230345	140230345	G	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.2265	p.R755S	0.040	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	33	0	0	46	12	20.69	-	-	-	T	140230345	G	T	140230345	3	4	721	1	0	0	0	0	1	0	0	0	11604	1194	42	4	2267	4	PCDHA9	5	140230345	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	6233244	140230345	40684915	26	63361										
PCDHB11	0	genome.wustl.edu	37	chr5	140580879	140580879	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ctccatcaacacagacaacgGccacctgttcgccctcaggt	7	17	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	140580879	140580879	G	C	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.1532	p.G511A	0.975	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	30	0	0	29	19	38.78	-	-	-	C	140580879	G	C	140580879	3	2	721	1	0	0	0	0	1	0	0	0	11609	1203	42	4	1534	4	PCDHB11	5	140580879	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	350534	140580879	40334381	27	63362										
C7orf63	0	genome.wustl.edu	37	chr7	89933315	89933315	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ctctatttactagctttcaaGaagagcaaaaaatcatccca	4	10	3	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	7	89933315	89933315	G	T	SNP	C7orf63	ENST00000389297	human	ensembl	69_37n	1	known	nonsense	c.2083	p.E695*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792	92	0	0	35	10	22.22	-	-	-	T	89933315	G	T	89933315	4	4	721	1	0	0	0	0	0	1	0	0	2432	943	33	2	2153	2	C7orf63	7	89933315	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		89933315	69205348	28	63363										
KCNB2	0	genome.wustl.edu	37	chr8	73848355	73848355	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cttttgcgattcttatcctcAccaaataaatggaagttctt	5	9	3	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	8	73848355	73848355	A	G	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	1	known	silent	c.765	p.S255	0.921	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	94	0	0	88	18	16.82	-	-	-	G	73848355	A	G	73848355	2	3	721	1	0	0	0	0	0	0	0	1	8067	146	6	5		5	KCNB2	8	73848355	Silent	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09		73848355	72515667	29	63364										
PLEC	0	genome.wustl.edu	37	chr8	145006612	145006612	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	catgttggtgttgcggtcgcTccagtcgaagcccacctcct	11	14	0	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	8	145006612	145006612	T	C	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.2344	p.S782G	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	32	0	0	50	12	19.35	-	-	-	C	145006612	T	C	145006612	3	2	721	1	0	0	0	0	1	0	0	0	12126	1551	54	5	11778	5	PLEC	8	145006612	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	71158257	145006612	1357410	30	63365										
ZNF658	0	genome.wustl.edu	37	chr9	40774928	40774928	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	atggtttttctaaaactttcTgtccttctttactcaatgtt	4	8	4	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	40774928	40774928	T	G	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.347	p.Q116P	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	69	0	0	18	4	18.18	-	-	-	G	40774928	T	G	40774928	3	3	721	1	0	0	0	0	1	0	0	0	18165	1580	55	5	2836	5	ZNF658	9	40774928	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09		40774928	100438503	31	63366										
TBC1D2	0	genome.wustl.edu	37	chr9	101006299	101006299	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	atttcagtccccaggtgcttGagggaaatattctgaagggc	12	8	2	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	101006299	101006299	G	C	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	silent	c.624	p.L208	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	28	0	0	21	15	41.67	-	-	-	C	101006299	G	C	101006299	2	2	721	1	0	0	0	0	0	0	0	1	15700	1277	45	2		2	TBC1D2	9	101006299	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	60231371	101006299	40207132	32	63367										
ADARB2	0	genome.wustl.edu	37	chr10	1279721	1279721	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	agatggaagaggatgttctcTcgcagccggtagccaccttc	12	11	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	10	1279721	1279721	T	C	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	silent	c.1428	p.R476	0.529	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	52	0	0	48	11	18.64	-	-	-	C	1279721	T	C	1279721	2	2	721	1	0	0	0	0	0	0	0	1	283	1538	54	5		5	ADARB2	10	1279721	Silent	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09		1279721	134255026	33	63368										
ARID5B	0	genome.wustl.edu	37	chr10	63759999	63759999	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ggggcattgcagtggtcagcAggaaccctcagatcctgtac	13	11	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	10	63759999	63759999	A	T	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	missense	c.652	p.R218W	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	60	0	0	23	12	34.29	-	-	-	T	63759999	A	T	63759999	3	4	721	1	0	0	0	0	1	0	0	0	924	179	7	5	666	5	ARID5B	10	63759999	Missense_Mutation	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09	62480278	63759999	71774748	34	63369										
OR5D13	0	genome.wustl.edu	37	chr11	55541620	55541620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gatgcgatctgcaagtgggcGccagaaaactttctccacct	10	12	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	55541620	55541620	G	A	SNP	OR5D13	ENST00000361760	human	ensembl	69_37n	1	known	missense	c.707	p.R236H	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877	90	0	0	27	17	36.96	-	-	-	A	55541620	G	A	55541620	3	1	721	1	0	0	0	0	1	0	0	0	11227	1087	38	1	709	1	OR5D13	11	55541620	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		55541620	79464896	35	63370										
PCNXL3	0	genome.wustl.edu	37	chr11	65384797	65384797	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gctgcagctcccagcactctGtgtttggcttcaaccaggtc	10	14	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	65384797	65384797	G	C	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.418	p.V140L	0.992	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	103	0	0	48	21	30.43	-	-	-	C	65384797	G	C	65384797	3	2	721	1	0	0	0	0	1	0	0	0	11666	1377	48	4	428	4	PCNXL3	11	65384797	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	9843177	65384797	69621719	36	63371										
NDUFV1	0	genome.wustl.edu	37	chr11	67377893	67377893	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gaggcaggtctgattggcaaGaatgcttgtggctctggcta	15	7	2	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	67377893	67377893	G	C	SNP	NDUFV1	ENST00000322776	human	ensembl	69_37n	1	known	missense	c.552	p.K184N	0.974	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	77	0	0	52	20	27.78	-	-	-	C	67377893	G	C	67377893	3	2	721	1	0	0	0	0	1	0	0	0	10371	933	33	2	570	2	NDUFV1	11	67377893	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	1993096	67377893	67628623	37	63372										
FGF3	0	genome.wustl.edu	37	chr11	69625283	69625283	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	agggaggacttctgtgtgcgGcgggtcttgaagcccctgcg	17	10	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	69625283	69625283	G	A	SNP	FGF3	ENST00000334134	human	ensembl	69_37n	-1	known	silent	c.510	p.R170	0.999	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF3	HGNC	ENSG00000186895	20	0	0	30	6	16.67	-	-	-	A	69625283	G	A	69625283	2	1	721	1	0	0	0	0	0	0	0	1	5899	1190	42	4		4	FGF3	11	69625283	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	2247390	69625283	65381233	38	63373										
MAP6	0	genome.wustl.edu	37	chr11	75298409	75298409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	aatggggtcttgattcttcaCggactcggggaccacaggac	13	10	3	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	75298409	75298409	C	T	SNP	MAP6	ENST00000304771	human	ensembl	69_37n	-1	known	missense	c.2137	p.V713M	0.000	NULL	pfam_STOP/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533	125	0	0	34	12	26.09	-	-	-	T	75298409	C	T	75298409	3	4	721	1	0	0	0	0	1	0	0	0	9335	536	19	1	308	1	MAP6	11	75298409	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	5673126	75298409	59708107	39	63374										
PRKRIR	0	genome.wustl.edu	37	chr11	76062798	76062798	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	actgcagagtacaaatgctcGgccagctatatagttattcc	8	10	0	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	76062798	76062798	G	A	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	nonsense	c.1396	p.R466*	0.988	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	37	0	0	8	7	46.67	-	-	-	A	76062798	G	A	76062798	4	1	721	1	0	0	0	0	0	1	0	0	12607	1124	39	1	893	1	PRKRIR	11	76062798	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	764389	76062798	58943718	40	63375										
NOP2	0	genome.wustl.edu	37	chr12	6666267	6666267	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gtgggaggctgaggccccttGggggtatcattctgtttctg	16	8	3	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	6666267	6666267	G	C	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	silent	c.2331	p.P777	0.000	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	24	0	0	22	5	18.52	-	-	-	C	6666267	G	C	6666267	2	2	721	1	0	0	0	0	0	0	0	1	10610	1335	47	4		4	NOP2	12	6666267	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		6666267	127185628	41	63376										
LRRC23	0	genome.wustl.edu	37	chr12	7014914	7014914	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	agaaaagagggggaagagttCcctgaggaagtgagagcctg	17	5	0	5			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	7014914	7014914	C	A	SNP	LRRC23	ENST00000007969	human	ensembl	69_37n	1	known	missense	c.117	p.F39L	0.000	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC23	HGNC	ENSG00000010626	34	0	0	20	4	16.67	-	-	-	A	7014914	C	A	7014914	3	1	721	1	0	0	0	0	1	0	0	0	9044	854	30	2	119	2	LRRC23	12	7014914	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	348647	7014914	126836981	42	63377										
ADAMTS20	0	genome.wustl.edu	37	chr12	43833862	43833862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	aaaagaaaattcccttcagcGtcagataatgctgtaaaaga	7	7	2	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	43833862	43833862	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	silent	c.2301	p.D767	0.172	pfam_ADAM_spacer1	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	62	0	0	30	11	26.83	-	-	-	A	43833862	G	A	43833862	2	1	721	1	0	0	0	0	0	0	0	1	266	1136	40	1		1	ADAMTS20	12	43833862	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	36818948	43833862	90018033	43	63378										
SBNO1	0	genome.wustl.edu	37	chr12	123798175	123798175	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tgtagaagttacctttaaaaAattctccaggatagtctgga	8	6	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	123798175	123798175	A	T	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	missense	c.3212	p.F1071Y	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	71	0	0	18	6	25	-	-	-	T	123798175	A	T	123798175	3	4	721	1	0	0	0	0	1	0	0	0	13949	14	1	5	1005	5	SBNO1	12	123798175	Missense_Mutation	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09	79964313	123798175	10053720	44	63379										
HEATR5A	0	genome.wustl.edu	37	chr14	31792818	31792818	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gtgctaaagcaatgtcaaaaTgtgcactgttagcattctca	8	8	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	31792818	31792818	T	A	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.3722	p.H1241L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	127	0	0	45	16	26.23	-	-	-	A	31792818	T	A	31792818	3	1	721	1	0	0	0	0	1	0	0	0	7082	1464	51	5	2452	5	HEATR5A	14	31792818	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09		31792818	75556722	45	63380										
SOS2	0	genome.wustl.edu	37	chr14	50605424	50605424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ctttcctcctcttactgaaaTtgattaaatctttccctttc	2	12	2	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	50605424	50605424	T	C	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	missense	c.2864	p.N955S	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	87	0	0	25	10	28.57	-	-	-	C	50605424	T	C	50605424	3	2	721	1	0	0	0	0	1	0	0	0	15026	1493	52	5	1158	5	SOS2	14	50605424	Missense_Mutation	SNP	T	TCGA-D8-A1Y0-01A-11D-A14K-09	18812606	50605424	56744116	46	63381										
SNAPC1	0	genome.wustl.edu	37	chr14	62235358	62235358	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	acgtattatcacatagctgtCatataggatgaagaaaaaaa	7	5	2	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	62235358	62235358	C	T	SNP	SNAPC1	ENST00000216294	human	ensembl	69_37n	1	known	missense	c.434	p.S145L	1.000	pfam_SNAPc_SNAP43	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	72	0	0	27	7	20.59	-	-	-	T	62235358	C	T	62235358	3	4	721	1	0	0	0	0	1	0	0	0	14923	838	29	2	448	2	SNAPC1	14	62235358	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	11629934	62235358	45114182	47	63382										
CDAN1	0	genome.wustl.edu	37	chr15	43025328	43025328	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ccaagcccttctcaaaatccCagccaggctcctcatggtga	7	16	2	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	15	43025328	43025328	C	T	SNP	CDAN1	ENST00000356231	human	ensembl	69_37n	-1	known	nonsense	c.1424	p.W475*	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	85	0	0	33	4	10.81	-	-	-	T	43025328	C	T	43025328	4	4	721	1	0	0	0	0	0	1	0	0	3083	595	21	4	2339	4	CDAN1	15	43025328	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09		43025328	59506064	48	63383										
NOMO2	0	genome.wustl.edu	37	chr16	18544464	18544464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	catctgcttgacggtgtccgGgaagcgaatgattgatatcc	12	9	1	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	16	18544464	18544464	G	T	SNP	NOMO2	ENST00000381474	human	ensembl	69_37n	-1	known	missense	c.1258	p.P420T	1.000	NULL	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	140	0	0	94	20	17.54	-	-	-	T	18544464	G	T	18544464	3	4	721	1	0	0	0	0	1	0	0	0	10604	1232	43	4	2633	4	NOMO2	16	18544464	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		18544464	71810289	49	63384										
MYH8	0	genome.wustl.edu	37	chr17	10298721	10298721	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cttggtttaactcaagctggAtacgcagaatctttccttct	7	10	3	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	10298721	10298721	A	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4691	p.I1564N	0.980	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	97	0	0	16	10	38.46	-	-	-	T	10298721	A	T	10298721	3	4	721	1	0	0	0	0	1	0	0	0	10113	333	12	5	1150	5	MYH8	17	10298721	Missense_Mutation	SNP	A	TCGA-D8-A1Y0-01A-11D-A14K-09		10298721	70896489	50	63385										
RHOT1	0	genome.wustl.edu	37	chr17	30536424	30536424	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tgggccacactgatagaataGagaatttgagaaaaatctgg	11	5	1	4			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	30536424	30536424	G	C	SNP	RHOT1	ENST00000358365	human	ensembl	69_37n	1	known	missense	c.1795	p.E599Q	1.000	pirsf_Small_GTPase_Miro	pfam_MIRO-like,pfam_EF_hand_assoc_2,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_EF_hand_Ca-bd,pirsf_Small_GTPase_Miro,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOT1	HGNC	ENSG00000126858	91	0	0	36	6	14.29	-	-	-	C	30536424	G	C	30536424	3	2	721	1	0	0	0	0	1	0	0	0	13427	943	33	2	1869	2	RHOT1	17	30536424	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	20237703	30536424	50658786	51	63386										
RAD51C	0	genome.wustl.edu	37	chr17	56801450	56801450	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	cggctaatctttcattgggaCcgaaagcaaaggtcagtaca	10	9	3	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	56801450	56801450	C	A	SNP	RAD51C	ENST00000337432	human	ensembl	69_37n	1	known	missense	c.954	p.D318E	0.980	pfam_DNA_recomb/repair_Rad51_C,pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	RAD51C	HGNC	ENSG00000108384	89	0	0	46	15	24.59	-	-	-	A	56801450	C	A	56801450	3	1	721	1	0	0	0	0	1	0	0	0	13071	506	18	4	984	4	RAD51C	17	56801450	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	26265026	56801450	24393760	52	63387										
ZNF555	0	genome.wustl.edu	37	chr19	2852854	2852854	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gtgtaaggaatgtgggaaagCtttcagttattcctcaacgt	11	6	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	2852854	2852854	C	G	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	1	known	missense	c.791	p.A264G	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	63	0	0	28	10	26.32	-	-	-	G	2852854	C	G	2852854	3	3	721	1	0	0	0	0	1	0	0	0	18082	797	28	4	805	4	ZNF555	19	2852854	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09		2852854	56276129	53	63388										
FCHO1	0	genome.wustl.edu	37	chr19	17887068	17887068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gtccacagggcaccatgaaaCgccattcttcacgtgagtag	10	12	2	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	17887068	17887068	C	T	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	missense	c.1195	p.R399C	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	90	0	0	43	16	26.67	-	-	-	T	17887068	C	T	17887068	3	4	721	1	0	0	0	0	1	0	0	0	5833	536	19	1	1249	1	FCHO1	19	17887068	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	15034214	17887068	41241915	54	63389										
YIF1B	0	genome.wustl.edu	37	chr19	38798137	38798137	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	ccaatcttcccgaagagcagGcccatgaggaccccgccaat	9	16	1	2			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	38798137	38798137	G	T	SNP	YIF1B	ENST00000588002	human	ensembl	69_37n	-1	known	missense	c.506	p.A169D	1.000	NULL	pfam_Hrf1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	YIF1B	HGNC	ENSG00000167645	37	0	0	36	4	10	-	-	-	T	38798137	G	T	38798137	3	4	721	1	0	0	0	0	1	0	0	0	17573	1190	42	4	313	4	YIF1B	19	38798137	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	20911069	38798137	20330846	55	63390										
NKPD1	0	genome.wustl.edu	37	chr19	45662102	45662102	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gcgctggcaggttccttgggGacagtggaggttgcaggcag	19	8	0	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	45662102	45662102	G	A	SNP	NKPD1	ENST00000317951	human	ensembl	69_37n	-1	known	silent	c.348	p.V116	0.069	NULL	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846	14	0	0	18	9	33.33	-	-	-	A	45662102	G	A	45662102	2	1	721	1	0	0	0	0	0	0	0	1	10518	1161	41	2		2	NKPD1	19	45662102	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	6863965	45662102	13466881	56	63391										
NINL	0	genome.wustl.edu	37	chr20	25481635	25481635	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gtggtggtgtggcagccgctCtcctctgggacctgcatgtc	15	12	2	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	25481635	25481635	C	G	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.873	p.E291D	0.989	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	32	0	0	32	13	28.89	-	-	-	G	25481635	C	G	25481635	3	3	721	1	0	0	0	0	1	0	0	0	10492	912	32	2	3343	2	NINL	20	25481635	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09		25481635	37543885	57	63392										
CEP250	0	genome.wustl.edu	37	chr20	34091216	34091216	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	attcaggttctcgaggatcaGaggacccggcagaccaagat	12	10	3	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	34091216	34091216	G	T	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	missense	c.5019	p.Q1673H	0.936	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	37	0	0	12	35	74.47	-	-	-	T	34091216	G	T	34091216	3	4	721	1	0	0	0	0	1	0	0	0	3281	933	33	2	5125	2	CEP250	20	34091216	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	8609581	34091216	28934304	58	63393										
TAF4	0	genome.wustl.edu	37	chr20	60581738	60581738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tggtggcctgcgaggtgggcGgtggcggctgctgctggctc	21	10	0	0			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	60581738	60581738	G	A	SNP	TAF4	ENST00000252996	human	ensembl	69_37n	-1	known	missense	c.2051	p.P684L	0.494	smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699	13	0	0	34	10	22.73	-	-	-	A	60581738	G	A	60581738	3	1	721	1	0	0	0	0	1	0	0	0	15618	1116	39	1	1242	1	TAF4	20	60581738	Missense_Mutation	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09	26490522	60581738	2443782	59	63394										
PSMA7	0	genome.wustl.edu	37	chr20	60714888	60714888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	tactccacagtgaccgggtcCtccacagtcagccggtggct	11	15	1	1			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	60714888	60714888	C	T	SNP	PSMA7	ENST00000442551	human	ensembl	69_37n	-1	known	missense	c.74	p.R25K	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMA7	HGNC	ENSG00000101182	26	0	0	48	8	14.29	-	-	-	T	60714888	C	T	60714888	3	4	721	1	0	0	0	0	1	0	0	0	12752	680	24	4	469	4	PSMA7	20	60714888	Missense_Mutation	SNP	C	TCGA-D8-A1Y0-01A-11D-A14K-09	133150	60714888	2310632	60	63395										
ABCG1	0	genome.wustl.edu	37	chr21	43645822	43645822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	8	0.22166911584178	1.81180952380952	3.96333333333333	0.377460317460317	0.0237358101135191	0.249608841838943	0	gagatgacggagcccaagtcGgtgtgtgtctcggtggatga	17	7	1	3			TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	21	43645822	43645822	G	A	SNP	ABCG1	ENST00000361802	human	ensembl	69_37n	1	known	silent	c.84	p.S28	0.008	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	95	0	0	30	29	49.15	-	-	-	A	43645822	G	A	43645822	2	1	721	1	0	0	0	0	0	0	0	1	68	1103	39	1		1	ABCG1	21	43645822	Silent	SNP	G	TCGA-D8-A1Y0-01A-11D-A14K-09		43645822	4484073	61	63396										
CASP9	0	genome.wustl.edu	37	chr1	15831197	15831197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgttcacaatcttctcgacCgacacagggcatccatctgt	7	13	4	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	15831197	15831197	C	T	SNP	CASP9	ENST00000424908	human	ensembl	69_37n	-1	novel	missense	c.301	p.G101S	0.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CASP9	HGNC	ENSG00000132906	42	0	0	14	5	26.32	-	-	-	T	15831197	C	T	15831197	3	4	722	1	0	0	0	0	1	0	0	0	2704	639	23	1	489	1	CASP9	1	15831197	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		15831197	233419424	1	63397										
SPEN	0	genome.wustl.edu	37	chr1	16260214	16260214	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggggggatcccacaccagagCccccctactaaggtgacaga							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	16260214	16260214	C	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.7479	p.P2495fs	0.001	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	32	0	0	20	5	20	-	-	-	-	16260214	C	-	16260214	7	5	722	1	0	1	0	1	0	0	0	0	15129	738	26	0	7521	0	SPEN	1	16260214	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	429017	16260214	232990407	2	63398										
EIF4G3	0	genome.wustl.edu	37	chr1	21299568	21299568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	taggtgctgactgatacaccGgctgacttgggtaaaaaggc	13	8	0	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	21299568	21299568	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	missense	c.371	p.P124L	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	44	0	0	22	18	45	-	-	-	A	21299568	G	A	21299568	3	1	722	1	0	0	0	0	1	0	0	0	5075	1116	39	1	4515	1	EIF4G3	1	21299568	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	5039354	21299568	227951053	3	63399										
JAK1	0	genome.wustl.edu	37	chr1	65325833	65325833	+	Frame_Shift_Del	DEL	G	G	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtatgttgtggacgatcaacGggggggccacgtcggtgcag							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	65325833	65325833	G	-	DEL	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	frame_shift_del	c.1289	p.P430fs	0.995	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	59	0	0	26	7	21.21	-	-	-	-	65325833	G	-	65325833	7	5	722	1	0	1	0	1	0	0	0	0	7991	1116	39	0	2243	0	JAK1	1	65325833	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y1-01A-21D-A14K-09	44026265	65325833	183924788	4	63400										
C1orf173	0	genome.wustl.edu	37	chr1	75036916	75036916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcactggaagtgttgccatcGcctgtagactctccggactc	10	13	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	75036916	75036916	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.4478	p.A1493V	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	60	0	0	41	6	12.5	-	-	-	A	75036916	G	A	75036916	3	1	722	1	0	0	0	0	1	0	0	0	2033	1087	38	1	118	1	C1orf173	1	75036916	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	9711083	75036916	174213705	5	63401										
DPYD	0	genome.wustl.edu	37	chr1	98058912	98058912	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	acaatcacgactccccgtatCgatggcaatggagagtgaca	10	11	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	98058912	98058912	C	T	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	silent	c.990	p.S330	0.998	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	43	0	0	27	11	28.95	-	-	-	T	98058912	C	T	98058912	2	4	722	1	0	0	0	0	0	0	0	1	4780	871	31	1		1	DPYD	1	98058912	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	23021996	98058912	151191709	6	63402										
TDRD10	0	genome.wustl.edu	37	chr1	154516982	154516982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cacctgggggattatggacaCgcctggaacaggtgtgtgcc	15	10	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	154516982	154516982	C	T	SNP	TDRD10	ENST00000368480	human	ensembl	69_37n	1	known	silent	c.786	p.H262	0.018	pfam_Tudor	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239	17	0	0	21	6	22.22	-	-	-	T	154516982	C	T	154516982	2	4	722	1	0	0	0	0	0	0	0	1	15826	535	19	1		1	TDRD10	1	154516982	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	56458070	154516982	94733639	7	63403										
MEF2D	0	genome.wustl.edu	37	chr1	156437437	156437437	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gaggaggggagtgggaatcgTcactttaatgtctgtgaaga	16	4	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	156437437	156437437	T	C	SNP	MEF2D	ENST00000348159	human	ensembl	69_37n	-1	known	nonstop	c.1566	p.*522W	0.995	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604	43	0	0	40	6	13.04	-	-	-	C	156437437	T	C	156437437	4	2	722	1	0	0	0	0	0	0	0	0	9529	1680	58	5	3	5	MEF2D	1	156437437	Nonstop_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	1920455	156437437	92813184	8	63404										
FCRL5	0	genome.wustl.edu	37	chr1	157504569	157504569	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	catgtcctcatgataaaactGgtataggatttgtggggaac	11	6	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	157504569	157504569	G	C	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1516	p.Q506E	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	30	0	0	32	7	17.95	-	-	-	C	157504569	G	C	157504569	3	2	722	1	0	0	0	0	1	0	0	0	5844	1357	47	4	1457	4	FCRL5	1	157504569	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	1067132	157504569	91746052	9	63405										
CD1E	0	genome.wustl.edu	37	chr1	158326370	158326370	+	Frame_Shift_Del	DEL	A	A	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gttgtagttgactcacggttAaaaaaacagaggtgagcttt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	158326370	158326370	A	-	DEL	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	frame_shift_del	c.987	p.K331fs	0.000	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	70	0	0	130	27	17.09	-	-	-	-	158326370	A	-	158326370	7	5	722	1	0	1	0	1	0	0	0	0	3007	359	13	0	1005	0	CD1E	1	158326370	Frame_Shift_Del	DEL	A	TCGA-D8-A1Y1-01A-21D-A14K-09	821801	158326370	90924251	10	63406										
CRP	0	genome.wustl.edu	37	chr1	159683727	159683727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctgtaaaactgtatcctataTccttagaccaaaatatgaga	5	8	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	159683727	159683727	T	C	SNP	CRP	ENST00000255030	human	ensembl	69_37n	-1	known	missense	c.263	p.D88G	0.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693	64	0	0	105	22	17.32	-	-	-	C	159683727	T	C	159683727	3	2	722	1	0	0	0	0	1	0	0	0	3925	1435	50	5	415	5	CRP	1	159683727	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	1357357	159683727	89566894	11	63407										
ATP1A4	0	genome.wustl.edu	37	chr1	160143454	160143454	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atctcagaaggcactgagacGgcagaggaagtcgctgcccg	14	11	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	160143454	160143454	G	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	silent	c.1938	p.T646	0.572	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	44	0	0	59	14	19.18	-	-	-	C	160143454	G	C	160143454	2	2	722	1	0	0	0	0	0	0	0	1	1135	1103	39	3		3	ATP1A4	1	160143454	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	459727	160143454	89107167	12	63408										
RGS16	0	genome.wustl.edu	37	chr1	182572462	182572462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aagatccccagacgtgtcttGaactctttggctctgaaaaa	8	10	3	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	182572462	182572462	G	C	SNP	RGS16	ENST00000367558	human	ensembl	69_37n	-1	known	missense	c.57	p.F19L	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS16	HGNC	ENSG00000143333	80	0	0	127	19	13.01	-	-	-	C	182572462	G	C	182572462	3	2	722	1	0	0	0	0	1	0	0	0	13382	1281	45	2	567	2	RGS16	1	182572462	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	22429008	182572462	66678159	13	63409										
HMCN1	0	genome.wustl.edu	37	chr1	186034377	186034377	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tggatttttacagggaatccAgtgccagaaattacatggca	10	7	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	186034377	186034377	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.7521	p.P2507	0.756	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	42	0	0	41	27	39.71	-	-	-	G	186034377	A	G	186034377	2	3	722	1	0	0	0	0	0	0	0	1	7271	175	7	5		5	HMCN1	1	186034377	Silent	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	3461915	186034377	63216244	14	63410										
CFH	0	genome.wustl.edu	37	chr1	196659317	196659317	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cttccaaaagcgcagaccacAgttacatgtatggagaatgg	10	9	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	196659317	196659317	A	G	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	silent	c.1284	p.T428	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	52	0	0	75	18	19.15	-	-	-	G	196659317	A	G	196659317	2	3	722	1	0	0	0	0	0	0	0	1	3312	175	7	5		5	CFH	1	196659317	Silent	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	10624940	196659317	52591304	15	63411										
AVPR1B	0	genome.wustl.edu	37	chr1	206224826	206224826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctacatgctgctggccatgaCgctggaccgctacctggctg	12	14	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	206224826	206224826	C	T	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	missense	c.386	p.T129M	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	29	0	0	20	5	20	-	-	-	T	206224826	C	T	206224826	3	4	722	1	0	0	0	0	1	0	0	0	1236	536	19	1	388	1	AVPR1B	1	206224826	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	9565509	206224826	43025795	16	63412										
PLXNA2	0	genome.wustl.edu	37	chr1	208227774	208227774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccagtactcaccacgaaggTgtactgctgatgggacttcg	11	12	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	208227774	208227774	T	C	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.2848	p.T950A	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	36	0	0	32	5	13.51	-	-	-	C	208227774	T	C	208227774	3	2	722	1	0	0	0	0	1	0	0	0	12194	1696	59	5	2912	5	PLXNA2	1	208227774	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	2002948	208227774	41022847	17	63413										
TMEM63A	0	genome.wustl.edu	37	chr1	226041376	226041376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccgtcttggccatgatcatgCggaaggtatagaggatgaga	14	7	2	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	226041376	226041376	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	missense	c.1751	p.R584H	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	45	0	0	24	5	17.24	-	-	-	T	226041376	C	T	226041376	3	4	722	1	0	0	0	0	1	0	0	0	16285	768	27	1	696	1	TMEM63A	1	226041376	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	17813602	226041376	23209245	18	63414										
GUK1	0	genome.wustl.edu	37	chr1	228335369	228335369	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gaggagagcctggtgaagcgGctggctgctgcccaggccga	18	11	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	228335369	228335369	G	A	SNP	GUK1	ENST00000366722	human	ensembl	69_37n	1	known	silent	c.438	p.R146	0.959	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin,tigrfam_Guanylate_kinase_sub	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin,tigrfam_Guanylate_kinase_sub	-	no_errors	GUK1	HGNC	ENSG00000143774	31	0	0	15	5	25	-	-	-	A	228335369	G	A	228335369	2	1	722	1	0	0	0	0	0	0	0	1	6951	1190	42	4		4	GUK1	1	228335369	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2293993	228335369	20915252	19	63415										
OBSCN	0	genome.wustl.edu	37	chr1	228497221	228497221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctggaactgtcagtttccacGtgggcacgtgtagctctgag	13	10	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	228497221	228497221	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.12973	p.V4325M	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	38	0	0	36	6	14.29	-	-	-	A	228497221	G	A	228497221	3	1	722	1	0	0	0	0	1	0	0	0	10885	1145	40	1	13163	1	OBSCN	1	228497221	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	161852	228497221	20753400	20	63416										
KCNK1	0	genome.wustl.edu	37	chr1	233802463	233802463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tccagcgcatcaccgtgcacGtcacccgcaggccggtcctc	10	19	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	233802463	233802463	G	A	SNP	KCNK1	ENST00000366621	human	ensembl	69_37n	1	known	missense	c.478	p.V160I	0.998	pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TWIK1	pirsf_2pore_dom_K_chnl_TASK/TWIK,pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl	-	no_errors	KCNK1	HGNC	ENSG00000135750	87	0	0	111	16	12.6	-	-	-	A	233802463	G	A	233802463	3	1	722	1	0	0	0	0	1	0	0	0	8112	1145	40	1	484	1	KCNK1	1	233802463	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	5305242	233802463	15448158	21	63417										
AHCTF1	0	genome.wustl.edu	37	chr1	247053342	247053342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gggtagttgtagcataacctTgacaactgcacagaatcatc	9	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	1	247053342	247053342	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.2097	p.S699	1.000	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	63	0	0	112	16	12.5	-	-	-	C	247053342	T	C	247053342	2	2	722	1	0	0	0	0	0	0	0	1	408	1799	63	5		5	AHCTF1	1	247053342	Silent	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	13250879	247053342	2197279	22	63418										
PXDN	0	genome.wustl.edu	37	chr2	1653368	1653368	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgtccgagcagttgttcacGcgccggtgggcggtacagcc	15	12	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	1653368	1653368	G	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	silent	c.2184	p.R728	0.575	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	39	0	0	18	9	33.33	-	-	-	A	1653368	G	A	1653368	2	1	722	1	0	0	0	0	0	0	0	1	12930	1074	38	1		1	PXDN	2	1653368	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		1653368	241546005	23	63419										
ZNF512	0	genome.wustl.edu	37	chr2	27838044	27838044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttgtcttgtagttaaaatatActcgtccagggctccctacc	7	11	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	27838044	27838044	A	G	SNP	ZNF512	ENST00000355467	human	ensembl	69_37n	1	known	missense	c.1141	p.T381A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943	82	0	0	67	27	28.72	-	-	-	G	27838044	A	G	27838044	3	3	722	1	0	0	0	0	1	0	0	0	18052	391	14	5	1183	5	ZNF512	2	27838044	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	26184676	27838044	215361329	24	63420										
BRE	0	genome.wustl.edu	37	chr2	28464261	28464261	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tttctcagtcactttggcacGtaagttctgccctgtttgaa	8	10	3	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	28464261	28464261	G	A	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	splice_site	c.851+1	e8+1	1.000	-	-	-	no_errors	BRE	HGNC	ENSG00000158019	104	0	0	72	37	33.94	-	-	-	A	28464261	G	A	28464261	5	1	722	1	0	0	0	0	0	0	1	0	1517	1159	40	1	882	1	BRE	2	28464261	Splice_Site	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	626217	28464261	214735112	25	63421										
MSH2	0	genome.wustl.edu	37	chr2	47702265	47702265	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gagcacctgttccatatgtaCgaccagccattttggagaaa	9	10	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	47702265	47702265	C	T	SNP	MSH2	ENST00000233146	human	ensembl	69_37n	1	known	nonsense	c.1861	p.R621*	1.000	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002	48	0	0	18	28	60.87	-	-	-	T	47702265	C	T	47702265	4	4	722	1	0	0	0	0	0	1	0	0	9942	528	19	1	1907	1	MSH2	2	47702265	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	19238004	47702265	195497108	26	63422										
VAX2	0	genome.wustl.edu	37	chr2	71160174	71160174	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gctgtcctcggcctcagcgtCccccccactgccgccccctc							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	71160174	71160174	C	-	DEL	VAX2	ENST00000234392	human	ensembl	69_37n	1	known	frame_shift_del	c.713	p.P240fs	0.296	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	VAX2	HGNC	ENSG00000116035	21	0	0	3	3	50	-	-	-	-	71160174	C	-	71160174	7	5	722	1	0	1	0	1	0	0	0	0	17232	855	30	0	723	0	VAX2	2	71160174	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	23457909	71160174	172039199	27	63423										
DYSF	0	genome.wustl.edu	37	chr2	71839797	71839797	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccagggaggagctctactgCccccccatcaccgtcaaggt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	71839797	71839797	C	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	frame_shift_del	c.4287	p.I1432fs	0.989	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	33	0	0	14	8	36.36	-	-	-	-	71839797	C	-	71839797	7	5	722	1	0	1	0	1	0	0	0	0	4894	747	26	0	4540	0	DYSF	2	71839797	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	679623	71839797	171359576	28	63424										
SLC5A7	0	genome.wustl.edu	37	chr2	108614339	108614341	+	In_Frame_Del	DEL	TCA	TCA	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgtggatatgcacatttctgTcatcatctctgcactcattg							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	108614339	108614341	TCA	-	DEL	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	in_frame_del	c.494_496	p.I167in_frame_del	1.000:0.999:1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	80	0	0	48	15	23.81	-	-	-	-	108614341	TCA	-	108614339	7	5	722	1	0	1	0	1	0	0	0	0	14759	1667	58	0	508	0	SLC5A7	2	108614339	In_Frame_Del	DEL	TCA	TCGA-D8-A1Y1-01A-21D-A14K-09	36774542	108614339	134585034	29	63425										
LCT	0	genome.wustl.edu	37	chr2	136564955	136564955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccctcgaaggtctataccatCgagcctgtaggctgggaaca	11	12	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	136564955	136564955	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.3916	p.D1306N	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	44	0	0	18	11	35.48	-	-	-	T	136564955	C	T	136564955	3	4	722	1	0	0	0	0	1	0	0	0	8747	884	31	1	1903	1	LCT	2	136564955	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	27950616	136564955	106634418	30	63426										
ZEB2	0	genome.wustl.edu	37	chr2	145147249	145147251	+	In_Frame_Del	DEL	CTT	CTT	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcgccttctttctcgtgctcCttctcgctctcgccatccct							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	145147249	145147251	CTT	-	DEL	ZEB2	ENST00000303660	human	ensembl	69_37n	-1	known	in_frame_del	c.3414_3412	p.K1138in_frame_del	1.000:1.000:1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554	80	0	0	58	18	23.68	-	-	-	-	145147251	CTT	-	145147249	7	5	722	1	0	1	0	1	0	0	0	0	17720	680	24	0	234	0	ZEB2	2	145147249	In_Frame_Del	DEL	CTT	TCGA-D8-A1Y1-01A-21D-A14K-09	8582294	145147249	98052124	31	63427										
BBS5	0	genome.wustl.edu	37	chr2	170344338	170344338	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtcggttacaattgcatattGaatattacaacaaggactgc	8	7	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	170344338	170344338	G	A	SNP	BBS5	ENST00000554017	human	ensembl	69_37n	1	known	silent	c.231	p.L77	1.000	pfam_BBL5,smart_DM16_repeat	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093	50	0	0	25	33	56.9	-	-	-	A	170344338	G	A	170344338	2	1	722	1	0	0	0	0	0	0	0	1	1344	1281	45	2		2	BBS5	2	170344338	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	25197089	170344338	72855035	32	63428										
TFPI	0	genome.wustl.edu	37	chr2	188332651	188332651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agtgagacaccatgagggacCgtgaaattctaaaaacaatc	9	8	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	188332651	188332651	C	T	SNP	TFPI	ENST00000233156	human	ensembl	69_37n	-1	known	missense	c.637	p.G213S	0.003	pirsf_Prot_inhib_I2_TFPI,superfamily_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436	43	0	0	54	16	22.86	-	-	-	T	188332651	C	T	188332651	3	4	722	1	0	0	0	0	1	0	0	0	15903	652	23	1	285	1	TFPI	2	188332651	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	17988313	188332651	54866722	33	63429										
PLCL1	0	genome.wustl.edu	37	chr2	198950763	198950763	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	catcatggagcacgtaacccTttttgtccacatagcaataa							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	198950763	198950763	T	-	DEL	PLCL1	ENST00000428675	human	ensembl	69_37n	1	known	frame_shift_del	c.2522	p.F842fs	0.918	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCL1	HGNC	ENSG00000115896	85	0	0	62	17	21.52	-	-	-	-	198950763	T	-	198950763	7	5	722	1	0	1	0	1	0	0	0	0	12113	1609	56	0	2528	0	PLCL1	2	198950763	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	10618112	198950763	44248610	34	63430										
TNS1	0	genome.wustl.edu	37	chr2	218682600	218682600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tctggcaaggctggtgttggGctcccttgccggaaggctgc	16	11	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	218682600	218682600	G	T	SNP	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	missense	c.4143	p.S1381R	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	49	0	0	13	9	40.91	-	-	-	T	218682600	G	T	218682600	3	4	722	1	0	0	0	0	1	0	0	0	16438	1194	42	4	1104	4	TNS1	2	218682600	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	19731837	218682600	24516773	35	63431										
ABCB6	0	genome.wustl.edu	37	chr2	220081432	220081432	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcccgttccaaacccatgagCcccaggcagatgagcaccac							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	2	220081432	220081432	C	-	DEL	ABCB6	ENST00000265316	human	ensembl	69_37n	-1	known	frame_shift_del	c.810	p.L271fs	0.510	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB6	HGNC	ENSG00000115657	23	0	0	13	6	31.58	-	-	-	-	220081432	C	-	220081432	7	5	722	1	0	1	0	1	0	0	0	0	45	726	26	0	1786	0	ABCB6	2	220081432	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	1398832	220081432	23117941	36	63432										
CAV3	0	genome.wustl.edu	37	chr3	8787229	8787229	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	caggtggattttgaagacgtGatcgcagagcctgtgggcac	15	8	0	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	8787229	8787229	G	A	SNP	CAV3	ENST00000343849	human	ensembl	69_37n	1	known	silent	c.132	p.V44	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV3	HGNC	ENSG00000182533	31	0	0	9	15	62.5	-	-	-	A	8787229	G	A	8787229	2	1	722	1	0	0	0	0	0	0	0	1	2720	1277	45	2		2	CAV3	3	8787229	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		8787229	189235201	37	63433										
HDAC11	0	genome.wustl.edu	37	chr3	13546039	13546039	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtgcccatccttatggtgacCtcaggcgggtaccagaagcg	13	12	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	13546039	13546039	C	A	SNP	HDAC11	ENST00000295757	human	ensembl	69_37n	1	known	silent	c.900	p.T300	0.936	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	40	0	0	19	8	29.63	-	-	-	A	13546039	C	A	13546039	2	1	722	1	0	0	0	0	0	0	0	1	7057	668	24	4		4	HDAC11	3	13546039	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	4758810	13546039	184476391	38	63434										
XIRP1	0	genome.wustl.edu	37	chr3	39227618	39227618	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gatccggggatcacttccacCcccaggccttatgttgcttt	9	14	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	39227618	39227618	C	A	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.3319	p.G1107C	0.157	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	31	0	0	10	4	28.57	-	-	-	A	39227618	C	A	39227618	3	1	722	1	0	0	0	0	1	0	0	0	17526	623	22	4	2216	4	XIRP1	3	39227618	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	25681579	39227618	158794812	39	63435										
RAD54L2	0	genome.wustl.edu	37	chr3	51673633	51673633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atagcaagttcctacagggcGttggcttcaaccctttccag	9	12	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	51673633	51673633	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	1	known	missense	c.2059	p.V687I	0.987	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	50	0	0	31	9	22.5	-	-	-	A	51673633	G	A	51673633	3	1	722	1	0	0	0	0	1	0	0	0	13077	1145	40	1	2101	1	RAD54L2	3	51673633	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	12446015	51673633	146348797	40	63436										
CCDC66	0	genome.wustl.edu	37	chr3	56650033	56650033	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aaatcagtggtaaaatgaatAcatatatgaattctacgact	6	5	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	56650033	56650033	A	G	SNP	CCDC66	ENST00000394672	human	ensembl	69_37n	1	known	missense	c.1795	p.T599A	0.001	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	61	0	0	23	33	58.93	-	-	-	G	56650033	A	G	56650033	3	3	722	1	0	0	0	0	1	0	0	0	2865	391	14	5	1845	5	CCDC66	3	56650033	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	4976400	56650033	141372397	41	63437										
NIT2	0	genome.wustl.edu	37	chr3	100058788	100058788	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atctcattggaggtaacttcCtacccacaaggtataatgac	7	10	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	100058788	100058788	C	T	SNP	NIT2	ENST00000480073	human	ensembl	69_37n	1	known	silent	c.256	p.L86	0.826	pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021	36	0	0	24	12	33.33	-	-	-	T	100058788	C	T	100058788	2	4	722	1	0	0	0	0	0	0	0	1	10506	696	24	4		4	NIT2	3	100058788	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	43408755	100058788	97963642	42	63438										
ZPLD1	0	genome.wustl.edu	37	chr3	102187833	102187833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	acaaggaccctcagaccaccGtcattgagaatggccgaagc	10	13	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	102187833	102187833	G	A	SNP	ZPLD1	ENST00000306176	human	ensembl	69_37n	1	known	missense	c.835	p.V279I	0.953	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	ZPLD1	HGNC	ENSG00000170044	37	0	0	15	27	64.29	-	-	-	A	102187833	G	A	102187833	3	1	722	1	0	0	0	0	1	0	0	0	18314	1145	40	1	865	1	ZPLD1	3	102187833	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2129045	102187833	95834597	43	63439										
ZBTB20	0	genome.wustl.edu	37	chr3	114057923	114057923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtcaaactttgctgggcagaCggagcagacgtaagtggtcc	14	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	114057923	114057923	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	69_37n	-1	known	missense	c.2155	p.V719I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	45	0	0	28	8	21.62	-	-	-	T	114057923	C	T	114057923	3	4	722	1	0	0	0	0	1	0	0	0	17625	536	19	1	74	1	ZBTB20	3	114057923	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	11870090	114057923	83964507	44	63440										
ABTB1	0	genome.wustl.edu	37	chr3	127395142	127395142	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gagcagggcatccacagtgaCgtggtctttgtagtacacgg	14	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	127395142	127395142	C	T	SNP	ABTB1	ENST00000232744	human	ensembl	69_37n	1	known	silent	c.348	p.D116	0.978	pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626	76	0	0	25	15	37.5	-	-	-	T	127395142	C	T	127395142	2	4	722	1	0	0	0	0	0	0	0	1	102	535	19	1		1	ABTB1	3	127395142	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	13337219	127395142	70627288	45	63441										
ABTB1	0	genome.wustl.edu	37	chr3	127396605	127396605	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gagccagcgacctcagggggCcccccagccgtcaccctgca							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	127396605	127396605	C	-	DEL	ABTB1	ENST00000232744	human	ensembl	69_37n	1	known	frame_shift_del	c.948	p.P318fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626	24	0	0	12	2	14.29	-	-	-	-	127396605	C	-	127396605	7	5	722	1	0	1	0	1	0	0	0	0	102	726	26	0	986	0	ABTB1	3	127396605	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	1463	127396605	70625825	46	63442										
DNAJC13	0	genome.wustl.edu	37	chr3	132153451	132153451	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttctacacaacaaaacattcAtggagggggaagtaagtatt	9	6	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	132153451	132153451	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	silent	c.57	p.S19	0.997	NULL	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	82	0	0	67	28	29.47	-	-	-	G	132153451	A	G	132153451	2	3	722	1	0	0	0	0	0	0	0	1	4667	204	8	5		5	DNAJC13	3	132153451	Silent	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	4756846	132153451	65868979	47	63443										
GMPS	0	genome.wustl.edu	37	chr3	155652811	155652811	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tacgccaagctgattttgagGcccataacattctcagggag	10	10	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	155652811	155652811	G	C	SNP	GMPS	ENST00000496455	human	ensembl	69_37n	1	known	missense	c.1783	p.A595P	1.000	pfam_GMP_synth_C	pfam_GATASE_1,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655	110	0	0	79	30	27.52	-	-	-	C	155652811	G	C	155652811	3	2	722	1	0	0	0	0	1	0	0	0	6550	1203	42	4	1837	4	GMPS	3	155652811	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	23499360	155652811	42369619	48	63444										
PIK3CA	0	genome.wustl.edu	37	chr3	178916823	178916823	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gatgaatcttcttacattttCgtaagtgttactcaagaagc	7	7	3	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	178916823	178916823	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.210	p.F70	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	34	0	0	32	18	36	-	-	-	T	178916823	C	T	178916823	2	4	722	1	0	0	0	0	0	0	0	1	11987	883	31	1		1	PIK3CA	3	178916823	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	23264012	178916823	19105607	49	63445										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	57	0	0	25	44	63.77	-	-	-	A	178936082	G	A	178936082	3	1	722	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	19259	178936082	19086348	50	63446										
IL1RAP	0	genome.wustl.edu	37	chr3	190373953	190373953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctaaattctggaaagctttgCggttggctcttcccctgaga	10	10	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	3	190373953	190373953	C	T	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.1621	p.R541W	0.745	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	29	0	0	18	16	47.06	-	-	-	T	190373953	C	T	190373953	3	4	722	1	0	0	0	0	1	0	0	0	7714	759	27	1	2051	1	IL1RAP	3	190373953	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	11437871	190373953	7648477	51	63447										
MAN2B2	0	genome.wustl.edu	37	chr4	6578364	6578364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtggtggaagagctggcccgCggccagcagcgccggttcat	17	12	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	6578364	6578364	C	T	SNP	MAN2B2	ENST00000505907	human	ensembl	69_37n	1	known	missense	c.194	p.A65V	0.020	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2B2	HGNC	ENSG00000013288	28	0	0	8	10	55.56	-	-	-	T	6578364	C	T	6578364	3	4	722	1	0	0	0	0	1	0	0	0	9288	755	27	1	204	1	MAN2B2	4	6578364	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		6578364	184575912	52	63448										
ZAR1	0	genome.wustl.edu	37	chr4	48496158	48496158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttcctgcccagtaaaacttcGccacgtggaccctaaacggc	8	15	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	48496158	48496158	G	A	SNP	ZAR1	ENST00000327939	human	ensembl	69_37n	1	known	missense	c.1172	p.R391H	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	no_errors	ZAR1	HGNC	ENSG00000182223	59	0	0	41	15	26.79	-	-	-	A	48496158	G	A	48496158	3	1	722	1	0	0	0	0	1	0	0	0	17612	1087	38	1	1186	1	ZAR1	4	48496158	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	41917794	48496158	142658118	53	63449										
LPHN3	0	genome.wustl.edu	37	chr4	62813942	62813942	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	taagacacatactacatgctCttgtaaccacctaacaaatt	3	11	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	62813942	62813942	C	T	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.2753	p.S918F	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	71	0	0	52	25	32.47	-	-	-	T	62813942	C	T	62813942	3	4	722	1	0	0	0	0	1	0	0	0	8983	913	32	2	2603	2	LPHN3	4	62813942	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	14317784	62813942	128340334	54	63450										
UGT2A1	0	genome.wustl.edu	37	chr4	70462045	70462045	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtttttgaccattgatcccaGagaaaacaccacaacaccat	5	12	0	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	70462045	70462045	G	A	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	silent	c.946	p.L316	0.997	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	78	0	0	62	53	46.09	-	-	-	A	70462045	G	A	70462045	2	1	722	1	0	0	0	0	0	0	0	1	17050	933	33	2		2	UGT2A1	4	70462045	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	7648103	70462045	120692231	55	63451										
MRPS18C	0	genome.wustl.edu	37	chr4	84377269	84377271	+	In_Frame_Del	DEL	GAA	GAA	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtttgcggtggtctagggagGaagaagttgacacacttggt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	84377269	84377271	GAA	-	DEL	MRPS18C	ENST00000295491	human	ensembl	69_37n	1	known	in_frame_del	c.39_41	p.K15in_frame_del	0.196:0.177:0.055	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18,tigrfam_Ribosomal_S18	-	no_errors	MRPS18C	HGNC	ENSG00000163319	43	0	0	31	12	27.27	-	-	-	-	84377271	GAA	-	84377269	7	5	722	1	0	1	0	1	0	0	0	0	9902	1165	41	0	41	0	MRPS18C	4	84377269	In_Frame_Del	DEL	GAA	TCGA-D8-A1Y1-01A-21D-A14K-09	13915224	84377269	106777007	56	63452										
ANK2	0	genome.wustl.edu	37	chr4	114251533	114251533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cacctgccgactggtcaagcGccacagactggcaacaatgc	10	15	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	114251533	114251533	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.3032	p.R1011H	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	58	0	0	48	12	20	-	-	-	A	114251533	G	A	114251533	3	1	722	1	0	0	0	0	1	0	0	0	621	1087	38	1	3203	1	ANK2	4	114251533	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	29874264	114251533	76902743	57	63453										
KIAA1109	0	genome.wustl.edu	37	chr4	123168476	123168476	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cagctaagttaaacattcatCgagttcatgggcaacttagg	9	8	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	123168476	123168476	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	nonsense	c.5476	p.R1826*	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	66	0	0	84	13	13.4	-	-	-	T	123168476	C	T	123168476	4	4	722	1	0	0	0	0	0	1	0	0	8260	876	31	1	5606	1	KIAA1109	4	123168476	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	8916943	123168476	67985800	58	63454										
RAPGEF2	0	genome.wustl.edu	37	chr4	160253744	160253744	+	Frame_Shift_Del	DEL	A	A	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agaacaggtgataggacttgAaaaagtgaacaaaaaaagta							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	4	160253744	160253744	A	-	DEL	RAPGEF2	ENST00000264431	human	ensembl	69_37n	1	known	frame_shift_del	c.1547	p.V518fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	51	0	0	55	12	17.91	-	-	-	-	160253744	A	-	160253744	7	5	722	1	0	1	0	1	0	0	0	0	13127	246	9	0	1589	0	RAPGEF2	4	160253744	Frame_Shift_Del	DEL	A	TCGA-D8-A1Y1-01A-21D-A14K-09	37085268	160253744	30900532	59	63455										
PDZD2	0	genome.wustl.edu	37	chr5	32090758	32090758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcagcttgagttcctgcagcGaaaaccaaagcgaagccggc	12	12	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	32090758	32090758	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.7204	p.E2402K	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	30	0	0	22	11	33.33	-	-	-	A	32090758	G	A	32090758	3	1	722	1	0	0	0	0	1	0	0	0	11774	1059	37	1	7278	1	PDZD2	5	32090758	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		32090758	148824502	60	63456										
TTC23L	0	genome.wustl.edu	37	chr5	34867123	34867123	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctgtacgaggaagctgctcaGatagagcagctgaggaggaa	15	7	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	34867123	34867123	G	A	SNP	TTC23L	ENST00000505624	human	ensembl	69_37n	1	known	silent	c.789	p.Q263	0.998	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	41	0	0	21	7	25	-	-	-	A	34867123	G	A	34867123	2	1	722	1	0	0	0	0	0	0	0	1	16788	933	33	2		2	TTC23L	5	34867123	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2776365	34867123	146048137	61	63457										
BDP1	0	genome.wustl.edu	37	chr5	70858270	70858270	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgaaagccaggaaaaaaatCgagagtcctctgatctgctt	9	8	2	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	70858270	70858270	C	T	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	nonsense	c.7666	p.R2556*	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	54	0	0	83	15	15.31	-	-	-	T	70858270	C	T	70858270	4	4	722	1	0	0	0	0	0	1	0	0	1399	876	31	1	7816	1	BDP1	5	70858270	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	35991147	70858270	110056990	62	63458										
DCP2	0	genome.wustl.edu	37	chr5	112321590	112321590	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgcaatccgagtgtgttttCagattgaacttgcccattgg	10	8	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	112321590	112321590	C	T	SNP	DCP2	ENST00000389063	human	ensembl	69_37n	1	known	nonsense	c.112	p.Q38*	1.000	pfam_mRNA_decapping_BoxA	pfam_mRNA_decapping_BoxA,pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	DCP2	HGNC	ENSG00000172795	113	0	0	110	26	19.12	-	-	-	T	112321590	C	T	112321590	4	4	722	1	0	0	0	0	0	1	0	0	4331	827	29	2	118	2	DCP2	5	112321590	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	41463320	112321590	68593670	63	63459										
HSD17B4	0	genome.wustl.edu	37	chr5	118835030	118835030	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aggctggagctattggccagAaactccctccattttcttat	8	11	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	118835030	118835030	A	G	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.991	p.K331E	0.010	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	76	0	0	82	23	21.9	-	-	-	G	118835030	A	G	118835030	3	3	722	1	0	0	0	0	1	0	0	0	7437	247	9	5	1041	5	HSD17B4	5	118835030	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	6513440	118835030	62080230	64	63460										
PCDHA4	0	genome.wustl.edu	37	chr5	140188906	140188906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcgcggtgtccagccttttgGtgctcacgctgctgctgtac	13	13	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	140188906	140188906	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	missense	c.2134	p.V712M	0.736	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	32	0	0	23	5	17.86	-	-	-	A	140188906	G	A	140188906	3	1	722	1	0	0	0	0	1	0	0	0	11599	1261	44	4	2136	4	PCDHA4	5	140188906	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	21353876	140188906	40726354	65	63461										
PCDHGA4	0	genome.wustl.edu	37	chr5	140735488	140735488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ataccaacgataatgctcccGtgttcactcagcccgagtac	7	14	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	140735488	140735488	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	missense	c.721	p.V241M	0.029	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	17	0	0	16	7	30.43	-	-	-	A	140735488	G	A	140735488	3	1	722	1	0	0	0	0	1	0	0	0	11629	1145	40	1	723	1	PCDHGA4	5	140735488	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	546582	140735488	40179772	66	63462										
PCDHGA7	0	genome.wustl.edu	37	chr5	140764797	140764797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccccagcccaactatgtagaCatgctcatcagccaggagag	9	14	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	140764797	140764797	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	silent	c.2331	p.D777	0.146	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	53	0	0	41	9	18	-	-	-	T	140764797	C	T	140764797	2	4	722	1	0	0	0	0	0	0	0	1	11632	477	17	4		4	PCDHGA7	5	140764797	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	29309	140764797	40150463	67	63463										
PCDHGA10	0	genome.wustl.edu	37	chr5	140793061	140793061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcgctcagagcgcgcggtgcGtggtgagttttaatatcctt	14	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	140793061	140793061	G	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	69_37n	1	known	missense	c.319	p.V107M	0.546	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846	48	0	0	33	7	17.5	-	-	-	A	140793061	G	A	140793061	3	1	722	1	0	0	0	0	1	0	0	0	11624	1145	40	1	321	1	PCDHGA10	5	140793061	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	28264	140793061	40122199	68	63464										
RNF14	0	genome.wustl.edu	37	chr5	141359789	141359789	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtggtgtactgcccccggccGtgctgccagctgcctgtgat	14	14	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	141359789	141359789	G	A	SNP	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	silent	c.936	p.P312	0.231	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	46	0	0	24	12	32.43	-	-	-	A	141359789	G	A	141359789	2	1	722	1	0	0	0	0	0	0	0	1	13529	1132	40	1		1	RNF14	5	141359789	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	566728	141359789	39555471	69	63465										
LSM11	0	genome.wustl.edu	37	chr5	157182096	157182096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agctgtcagggaggactacaCggacagacggctccagtgtg	15	10	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	157182096	157182096	C	T	SNP	LSM11	ENST00000286307	human	ensembl	69_37n	1	known	missense	c.907	p.R303W	0.997	superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM11	HGNC	ENSG00000155858	35	0	0	26	14	35	-	-	-	T	157182096	C	T	157182096	3	4	722	1	0	0	0	0	1	0	0	0	9118	527	19	1	921	1	LSM11	5	157182096	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	15822307	157182096	23733164	70	63466										
C1QTNF2	0	genome.wustl.edu	37	chr5	159776463	159776463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aagtagtagatcccaggcacGccgcagacgaacttgccgct	11	13	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	159776463	159776463	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	69_37n	-1	known	silent	c.705	p.G235	0.042	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861	55	0	0	28	12	28.57	-	-	-	A	159776463	G	A	159776463	2	1	722	1	0	0	0	0	0	0	0	1	1982	1074	38	1		1	C1QTNF2	5	159776463	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2594367	159776463	21138797	71	63467										
RARS	0	genome.wustl.edu	37	chr5	167946113	167946113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	attgaaggtgaacatgtggcGtatgctgctatgtgaagcag	14	5	0	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	167946113	167946113	G	A	SNP	RARS	ENST00000231572	human	ensembl	69_37n	1	known	missense	c.1901	p.R634H	0.999	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS	HGNC	ENSG00000113643	39	0	0	38	9	19.15	-	-	-	A	167946113	G	A	167946113	3	1	722	1	0	0	0	0	1	0	0	0	13141	1145	40	1	1959	1	RARS	5	167946113	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	8169650	167946113	12969147	72	63468										
UBTD2	0	genome.wustl.edu	37	chr5	171638974	171638974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aaaccaccgctgactacctgGttccactccctctgctgcat	6	17	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	5	171638974	171638974	G	A	SNP	UBTD2	ENST00000393792	human	ensembl	69_37n	-1	known	missense	c.565	p.P189S	0.996	pfam_Ubiquitin,pfam_SUMO,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,pfscan_Ubiquitin_supergroup	-	no_errors	UBTD2	HGNC	ENSG00000168246	40	0	0	46	18	28.12	-	-	-	A	171638974	G	A	171638974	3	1	722	1	0	0	0	0	1	0	0	0	17005	1261	44	4	143	4	UBTD2	5	171638974	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	3692861	171638974	9276286	73	63469										
TRIM38	0	genome.wustl.edu	37	chr6	25983774	25983774	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggaatttttctggactatgaGgccggagttgtatcctttta	11	6	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	6	25983774	25983774	G	A	SNP	TRIM38	ENST00000349458	human	ensembl	69_37n	1	known	silent	c.1257	p.E419	0.929	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343	82	0	0	38	12	24	-	-	-	A	25983774	G	A	25983774	2	1	722	1	0	0	0	0	0	0	0	1	16608	991	35	4		4	TRIM38	6	25983774	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		25983774	145131293	74	63470										
MRPS18B	0	genome.wustl.edu	37	chr6	30587733	30587733	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gttgggaatccctgccccatCtgtcgagatcacaagttgca	10	12	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	6	30587733	30587733	C	T	SNP	MRPS18B	ENST00000259873	human	ensembl	69_37n	1	known	silent	c.321	p.I107	1.000	superfamily_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568	111	0	0	60	35	36.84	-	-	-	T	30587733	C	T	30587733	2	4	722	1	0	0	0	0	0	0	0	1	9901	903	32	2		2	MRPS18B	6	30587733	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	4603959	30587733	140527334	75	63471										
SPACA1	0	genome.wustl.edu	37	chr6	88773880	88773880	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cctaatttttgtgctgaccaTaggagtcattatctgtgtat	8	7	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	6	88773880	88773880	T	C	SNP	SPACA1	ENST00000237201	human	ensembl	69_37n	1	known	missense	c.674	p.I225T	0.542	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	75	0	0	61	21	25.61	-	-	-	C	88773880	T	C	88773880	3	2	722	1	0	0	0	0	1	0	0	0	15061	1406	49	5	696	5	SPACA1	6	88773880	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	58186147	88773880	82341187	76	63472										
AKD1	0	genome.wustl.edu	37	chr6	109906406	109906406	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttagagtcaatttcagatttCttctgtaaatatattctatt	4	5	5	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	6	109906406	109906406	C	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.2034	p.K678N	0.944	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	27	0	0	23	5	17.86	-	-	-	G	109906406	C	G	109906406	3	3	722	1	0	0	0	0	1	0	0	0	460	912	32	2	3793	2	AKD1	6	109906406	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	21132526	109906406	61208661	77	63473										
PCLO	0	genome.wustl.edu	37	chr7	82595175	82595177	+	In_Frame_Del	DEL	TCT	TCT	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttgttttggttgtcttatcaTcttctttaggtaaactctga							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	7	82595175	82595177	TCT	-	DEL	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	in_frame_del	c.3929_3927	p.E1309in_frame_del	0.007:0.008:0.002	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	165	0	0	172	20	10.42	-	-	-	-	82595177	TCT	-	82595175	7	5	722	1	0	1	0	1	0	0	0	0	11656	1435	50	0	11604	0	PCLO	7	82595175	In_Frame_Del	DEL	TCT	TCGA-D8-A1Y1-01A-21D-A14K-09		82595175	76543488	78	63474										
TRIM56	0	genome.wustl.edu	37	chr7	100732127	100732127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agcggtccccccggatcaccGggctctgtcccttcggtccc	11	19	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	7	100732127	100732127	G	A	SNP	TRIM56	ENST00000306085	human	ensembl	69_37n	1	known	missense	c.1534	p.G512R	0.469	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871	13	0	0	4	12	75	-	-	-	A	100732127	G	A	100732127	3	1	722	1	0	0	0	0	1	0	0	0	16626	1116	39	1	1536	1	TRIM56	7	100732127	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	18136952	100732127	58406536	79	63475										
TAS2R3	0	genome.wustl.edu	37	chr7	141464156	141464156	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgtattatcttgactgatagTtttttaatagaattctctcc							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	7	141464156	141464156	T	-	DEL	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	frame_shift_del	c.198	p.L68fs	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	83	0	0	145	25	14.71	-	-	-	-	141464156	T	-	141464156	7	5	722	1	0	1	0	1	0	0	0	0	15664	1722	60	0	200	0	TAS2R3	7	141464156	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	40732029	141464156	17674507	80	63476										
TMEM139	0	genome.wustl.edu	37	chr7	142983891	142983891	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcaccctgatgatgatagtgTtttttatgaggacaactggg							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	7	142983891	142983891	T	-	DEL	TMEM139	ENST00000359333	human	ensembl	69_37n	1	known	frame_shift_del	c.620	p.Y209fs	1.000	NULL	NULL	-	no_errors	TMEM139	HGNC	ENSG00000178826	79	0	0	69	19	21.11	-	-	-	-	142983891	T	-	142983891	7	5	722	1	0	1	0	1	0	0	0	0	16149	1725	60	0	626	0	TMEM139	7	142983891	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	1519735	142983891	16154772	81	63477										
ARHGEF5	0	genome.wustl.edu	37	chr7	144068342	144068342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccaactttcaacttcactccGggccacactttccaaccagg	5	17	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	7	144068342	144068342	G	A	SNP	ARHGEF5	ENST00000056217	human	ensembl	69_37n	1	known	missense	c.3620	p.R1207Q	0.141	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	80	0	0	54	9	14.29	-	-	-	A	144068342	G	A	144068342	3	1	722	1	0	0	0	0	1	0	0	0	911	1116	39	1	3638	1	ARHGEF5	7	144068342	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	1084451	144068342	15070321	82	63478										
TRIM35	0	genome.wustl.edu	37	chr8	27151640	27151640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccttcatctccatctgcagcCgctcgatctcatgtgccagc	7	17	4	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	27151640	27151640	C	T	SNP	TRIM35	ENST00000305364	human	ensembl	69_37n	-1	known	missense	c.719	p.R240Q	0.995	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228	54	0	0	51	15	22.73	-	-	-	T	27151640	C	T	27151640	3	4	722	1	0	0	0	0	1	0	0	0	16605	652	23	1	778	1	TRIM35	8	27151640	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		27151640	119212382	83	63479										
PPP2CB	0	genome.wustl.edu	37	chr8	30648767	30648767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tagcagcctggttcccacaaCgataacagtaattgggtgca	10	10	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	30648767	30648767	C	T	SNP	PPP2CB	ENST00000221138	human	ensembl	69_37n	-1	known	missense	c.803	p.R268H	1.000	smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CB	HGNC	ENSG00000104695	51	0	0	81	12	12.9	-	-	-	T	30648767	C	T	30648767	3	4	722	1	0	0	0	0	1	0	0	0	12458	536	19	1	134	1	PPP2CB	8	30648767	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	3497127	30648767	115715255	84	63480										
SGK196	0	genome.wustl.edu	37	chr8	42977594	42977594	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgcgactccaacgacctgccGaagacactgtcccagtatct	8	15	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	42977594	42977594	G	A	SNP	SGK196	ENST00000331373	human	ensembl	69_37n	1	known	silent	c.627	p.P209	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK196	Clone_based_vega_gene	ENSG00000185900	42	0	0	55	10	15.38	-	-	-	A	42977594	G	A	42977594	2	1	722	1	0	0	0	0	0	0	0	1	14296	1045	37	1		1	SGK196	8	42977594	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	12328827	42977594	103386428	85	63481										
CSPP1	0	genome.wustl.edu	37	chr8	68089932	68089932	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cagttgacttagatgccatcCcaagtgctaaagtacgagag	10	9	0	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	68089932	68089932	C	A	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.3112	p.P1038T	0.003	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	80	0	0	160	29	15.34	-	-	-	A	68089932	C	A	68089932	3	1	722	1	0	0	0	0	1	0	0	0	3994	623	22	4	3323	4	CSPP1	8	68089932	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	25112338	68089932	78274090	86	63482										
RAD21	0	genome.wustl.edu	37	chr8	117866515	117866515	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgttattccacaaaggctgaGcaggtaaagaaaacagtttt	9	6	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	117866515	117866515	G	C	SNP	RAD21	ENST00000297338	human	ensembl	69_37n	-1	known	missense	c.1130	p.A377G	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754	64	0	0	106	13	10.92	-	-	-	C	117866515	G	C	117866515	3	2	722	1	0	0	0	0	1	0	0	0	13064	971	34	4	789	4	RAD21	8	117866515	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	49776583	117866515	28497507	87	63483										
TAF2	0	genome.wustl.edu	37	chr8	120774729	120774729	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctggtgatttcttcaagaatGagtcgcacatcaggatttaa	9	7	3	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	120774729	120774729	G	A	SNP	TAF2	ENST00000523098	human	ensembl	69_37n	-1	known	missense	c.46	p.H16Y	0.398	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAF2	HGNC	ENSG00000064313	59	0	0	74	30	28.85	-	-	-	A	120774729	G	A	120774729	3	1	722	1	0	0	0	0	1	0	0	0	15616	1277	45	2	1147	2	TAF2	8	120774729	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2908214	120774729	25589293	88	63484										
WDR67	0	genome.wustl.edu	37	chr8	124105925	124105925	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cacacttttttgcaaatatcAattgccagctccacctgaaa	4	12	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	124105925	124105925	A	G	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.614	p.Q205R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	83	0	0	162	22	11.96	-	-	-	G	124105925	A	G	124105925	3	3	722	1	0	0	0	0	1	0	0	0	17415	130	5	5	632	5	WDR67	8	124105925	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	3331196	124105925	22258097	89	63485										
ZNF572	0	genome.wustl.edu	37	chr8	125987892	125987893	+	Frame_Shift_Ins	INS	-	-	A													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gatcattgtgatggagcaagINSaaaaaaaactgttggtctca							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	125987892	125987893	-	A	INS	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	frame_shift_ins	c.10_11	p.L7fs	0.001:0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	87	0	0	176	23	11.56	-	-	-	A	125987893	-	A	125987892	7	5	722	1	0	1	1	0	0	0	0	0	18100	943	33	0	12	0	ZNF572	8	125987892	Frame_Shift_Ins	INS	-	TCGA-D8-A1Y1-01A-21D-A14K-09	1881967	125987892	20376130	90	63486										
EPPK1	0	genome.wustl.edu	37	chr8	144941901	144941901	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cactttgatgccttggttttGcgtctctgtttcttcaattg	8	9	3	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	8	144941901	144941901	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	nonsense	c.5521	p.Q1841*	0.001	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	139	0	0	228	29	11.28	-	-	-	A	144941901	G	A	144941901	4	1	722	1	0	0	0	0	0	1	0	0	5227	1328	46	4	1745	4	EPPK1	8	144941901	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	18954009	144941901	1422121	91	63487										
GNA14	0	genome.wustl.edu	37	chr9	80040546	80040546	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cttccaaaagatccttcttgTtcaagaataaaatcacagac	4	10	3	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	80040546	80040546	T	A	SNP	GNA14	ENST00000341700	human	ensembl	69_37n	-1	known	missense	c.809	p.N270I	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049	70	0	0	71	25	26.04	-	-	-	A	80040546	T	A	80040546	3	1	722	1	0	0	0	0	1	0	0	0	6554	1725	60	5	266	5	GNA14	9	80040546	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09		80040546	61172885	92	63488										
OR13C4	0	genome.wustl.edu	37	chr9	107289169	107289169	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gaggaaacattctgttgaccCcattgcaaacccaaagaaca	7	11	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	107289169	107289169	C	A	SNP	OR13C4	ENST00000277216	human	ensembl	69_37n	-1	known	missense	c.322	p.G108W	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C4	HGNC	ENSG00000148136	49	0	0	44	32	42.11	-	-	-	A	107289169	C	A	107289169	3	1	722	1	0	0	0	0	1	0	0	0	11009	623	22	4	636	4	OR13C4	9	107289169	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	27248623	107289169	33924262	93	63489										
PRPF4	0	genome.wustl.edu	37	chr9	116053923	116053923	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	catatgacaggaccttcaagCtgtggatggctgaatagatg	12	7	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	116053923	116053923	C	T	SNP	PRPF4	ENST00000374198	human	ensembl	69_37n	1	known	silent	c.1552	p.L518	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875	37	0	0	47	12	20.34	-	-	-	T	116053923	C	T	116053923	2	4	722	1	0	0	0	0	0	0	0	1	12651	796	28	4		4	PRPF4	9	116053923	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	8764754	116053923	25159508	94	63490										
PAPPA	0	genome.wustl.edu	37	chr9	118950410	118950410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	acatggactgcaactatgaaCggttcaactttgatggtgga	11	7	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	118950410	118950410	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.1393	p.R465W	0.962	smart_Notch_dom	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	28	0	0	18	5	20.83	-	-	-	T	118950410	C	T	118950410	3	4	722	1	0	0	0	0	1	0	0	0	11505	527	19	1	1399	1	PAPPA	9	118950410	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2896487	118950410	22263021	95	63491										
FUBP3	0	genome.wustl.edu	37	chr9	133506076	133506076	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cacgtggagcttcagaggaaCccccctcccaacagcgaccc							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	133506076	133506076	C	-	DEL	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	frame_shift_del	c.1179	p.P395fs	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	20	0	0	14	6	28.57	-	-	-	-	133506076	C	-	133506076	7	5	722	1	0	1	0	1	0	0	0	0	6142	506	18	0	1229	0	FUBP3	9	133506076	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	14555666	133506076	7707355	96	63492										
ADAMTS13	0	genome.wustl.edu	37	chr9	136307529	136307529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tttgtctgcaggtttacaggCggtatggcgaggagtatggc	16	6	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	9	136307529	136307529	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.1978	p.R660W	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	49	0	0	24	7	22.58	-	-	-	T	136307529	C	T	136307529	3	4	722	1	0	0	0	0	1	0	0	0	258	759	27	1	2044	1	ADAMTS13	9	136307529	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2801453	136307529	4905902	97	63493										
SFMBT2	0	genome.wustl.edu	37	chr10	7218087	7218087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgcgacttggtcagatgtccGtacgattttgaccacagccc	10	12	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	7218087	7218087	G	A	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.1849	p.R617W	0.998	pfam_DUF3588	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	68	0	0	67	20	22.99	-	-	-	A	7218087	G	A	7218087	3	1	722	1	0	0	0	0	1	0	0	0	14246	1144	40	1	855	1	SFMBT2	10	7218087	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		7218087	128316660	98	63494										
OPTN	0	genome.wustl.edu	37	chr10	13169759	13169759	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tttcagtcagaaaaagtggaCagggcagtgctgaaggaact	13	6	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	13169759	13169759	C	T	SNP	OPTN	ENST00000263036	human	ensembl	69_37n	1	known	silent	c.1257	p.D419	0.046	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	35	0	0	45	6	11.76	-	-	-	T	13169759	C	T	13169759	2	4	722	1	0	0	0	0	0	0	0	1	10962	477	17	4		4	OPTN	10	13169759	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	5951672	13169759	122364988	99	63495										
KIF5B	0	genome.wustl.edu	37	chr10	32311826	32311826	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctccttttcattttcttccaTttttttgttgctctcagttt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	32311826	32311826	T	-	DEL	KIF5B	ENST00000302418	human	ensembl	69_37n	-1	known	frame_shift_del	c.1864	p.M622fs	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	126	0	0	109	28	20.29	-	-	-	-	32311826	T	-	32311826	7	5	722	1	0	1	0	1	0	0	0	0	8358	1493	52	0	1067	0	KIF5B	10	32311826	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	19142067	32311826	103222921	100	63496										
MARCH5	0	genome.wustl.edu	37	chr10	94109244	94109244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	actatgtgcttagactgtggCgcaaatactcgaataaacta	8	8	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	94109244	94109244	C	T	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.508	p.R170C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	66	0	0	68	23	25.27	-	-	-	T	94109244	C	T	94109244	3	4	722	1	0	0	0	0	1	0	0	0	9375	768	27	1	522	1	MARCH5	10	94109244	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	61797418	94109244	41425503	101	63497										
PNLIPRP1	0	genome.wustl.edu	37	chr10	118351338	118351338	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tctgacactgagccctggggCgggacagcaatcaggcccct	13	14	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	118351338	118351338	C	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	69_37n	1	known	silent	c.105	p.G35	0.564	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021	65	0	0	22	25	53.19	-	-	-	T	118351338	C	T	118351338	2	4	722	1	0	0	0	0	0	0	0	1	12224	755	27	1		1	PNLIPRP1	10	118351338	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	24242094	118351338	17183409	102	63498										
TACC2	0	genome.wustl.edu	37	chr10	123844356	123844356	+	Frame_Shift_Del	DEL	C	C	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttcatgctggggtgccacatCccccccagggggagaacttg							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	123844356	123844356	C	-	DEL	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	frame_shift_del	c.2341	p.Q783fs	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	30	0	0	21	6	22.22	-	-	-	-	123844356	C	-	123844356	7	5	722	1	0	1	0	1	0	0	0	0	15594	855	30	0	2351	0	TACC2	10	123844356	Frame_Shift_Del	DEL	C	TCGA-D8-A1Y1-01A-21D-A14K-09	5493018	123844356	11690391	103	63499										
MTG1	0	genome.wustl.edu	37	chr10	135233665	135233665	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccccccggctgagactttgcCctgaacttgtccgggtaggg	13	14	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	10	135233665	135233665	C	A	SNP	MTG1	ENST00000317502	human	ensembl	69_37n	1	known	missense	c.1001	p.P334H	0.001	NULL	pfam_GTP_binding_domain,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	16	0	0	17	5	22.73	-	-	-	A	135233665	C	A	135233665	3	1	722	1	0	0	0	0	1	0	0	0	9998	623	22	4	1043	4	MTG1	10	135233665	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	11389309	135233665	301082	104	63500										
SYT8	0	genome.wustl.edu	37	chr11	1857151	1857151	+	Frame_Shift_Del	DEL	G	G	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gatggcctggagtccagcccGggggatgctcagcaatgggg							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	1857151	1857151	G	-	DEL	SYT8	ENST00000381968	human	ensembl	69_37n	1	known	frame_shift_del	c.336	p.D114fs	0.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	-	no_errors	SYT8	HGNC	ENSG00000149043	26	0	0	13	6	31.58	-	-	-	-	1857151	G	-	1857151	7	5	722	1	0	1	0	1	0	0	0	0	15572	1103	39	0	350	0	SYT8	11	1857151	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y1-01A-21D-A14K-09		1857151	133149365	105	63501										
ALX4	0	genome.wustl.edu	37	chr11	44289156	44289156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcttcctccacttggcccttCggttctggaaccagacctac	8	16	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	44289156	44289156	C	T	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	missense	c.794	p.R265Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	58	0	0	39	11	22	-	-	-	T	44289156	C	T	44289156	3	4	722	1	0	0	0	0	1	0	0	0	558	884	31	1	449	1	ALX4	11	44289156	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	42432005	44289156	90717360	106	63502										
KBTBD4	0	genome.wustl.edu	37	chr11	47599060	47599060	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttggcacagtgcttggcagcCgtatagagctcaggatcact	12	10	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	47599060	47599060	C	A	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	silent	c.540	p.T180	0.864	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	41	0	0	27	8	22.86	-	-	-	A	47599060	C	A	47599060	2	1	722	1	0	0	0	0	0	0	0	1	8049	639	23	3		3	KBTBD4	11	47599060	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	3309904	47599060	87407456	107	63503										
SERPING1	0	genome.wustl.edu	37	chr11	57373624	57373624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	caccaacaacaagatcagccGgctgctagacagtctgccct	8	15	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	57373624	57373624	G	A	SNP	SERPING1	ENST00000278407	human	ensembl	69_37n	1	known	missense	c.827	p.R276Q	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	77	0	0	39	18	31.58	-	-	-	A	57373624	G	A	57373624	3	1	722	1	0	0	0	0	1	0	0	0	14204	1116	39	1	841	1	SERPING1	11	57373624	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	9774564	57373624	77632892	108	63504										
DLG2	0	genome.wustl.edu	37	chr11	83195172	83195172	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atctttcagaatctacttacGttcaggatcactggtttcct	6	10	5	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	83195172	83195172	G	A	SNP	DLG2	ENST00000376104	human	ensembl	69_37n	-1	known	nonsense	c.2293	p.R765*	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	59	0	0	65	10	13.33	-	-	-	A	83195172	G	A	83195172	4	1	722	1	0	0	0	0	0	1	0	0	4591	1159	40	1	712	1	DLG2	11	83195172	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	25821548	83195172	51811344	109	63505										
ZBTB16	0	genome.wustl.edu	37	chr11	113935219	113935219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtgggcatgaagtcagagagCcggaccatcggagagcagtg	17	8	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	113935219	113935219	C	T	SNP	ZBTB16	ENST00000539918	human	ensembl	69_37n	1	known	missense	c.86	p.A29V	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZBTB16	HGNC	ENSG00000109906	50	0	0	19	13	39.39	-	-	-	T	113935219	C	T	113935219	3	4	722	1	0	0	0	0	1	0	0	0	17622	738	26	4	1199	4	ZBTB16	11	113935219	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	30740047	113935219	21071297	110	63506										
MLL	0	genome.wustl.edu	37	chr11	118391565	118391565	+	Frame_Shift_Del	DEL	A	A	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccatgcgcttccggcacttAaaaaagacttctaaggaggc							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	118391565	118391565	A	-	DEL	MLL	ENST00000389506	human	ensembl	69_37n	1	known	frame_shift_del	c.11469	p.K3825fs	0.996	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	31	0	0	31	8	20.51	-	-	-	-	118391565	A	-	118391565	7	5	722	1	0	1	0	1	0	0	0	0	9691	359	13	0	11603	0	MLL	11	118391565	Frame_Shift_Del	DEL	A	TCGA-D8-A1Y1-01A-21D-A14K-09	4456346	118391565	16614951	111	63507										
GLB1L2	0	genome.wustl.edu	37	chr11	134244521	134244521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggagaagggggttgtattcaTcaatggccagaaccttggac	14	7	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	11	134244521	134244521	T	C	SNP	GLB1L2	ENST00000339772	human	ensembl	69_37n	1	known	missense	c.1733	p.I578T	1.000	superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328	61	0	0	33	8	19.51	-	-	-	C	134244521	T	C	134244521	3	2	722	1	0	0	0	0	1	0	0	0	6481	1435	50	5	1803	5	GLB1L2	11	134244521	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	15852956	134244521	761995	112	63508										
ITFG2	0	genome.wustl.edu	37	chr12	2929346	2929346	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggtgagggtcctgaacatctGacagggcagctggtgtccct	15	10	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	2929346	2929346	G	A	SNP	ITFG2	ENST00000228799	human	ensembl	69_37n	1	known	silent	c.501	p.L167	0.000	superfamily_WD40_repeat_dom	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203	68	0	0	34	22	39.29	-	-	-	A	2929346	G	A	2929346	2	1	722	1	0	0	0	0	0	0	0	1	7924	1277	45	2		2	ITFG2	12	2929346	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		2929346	130922549	113	63509										
CD9	0	genome.wustl.edu	37	chr12	6344725	6344725	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gacgtactcgaaaccttcacCgtgaaggtaaactcagacca	8	12	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	6344725	6344725	C	G	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	silent	c.531	p.T177	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	83	0	0	54	12	17.91	-	-	-	G	6344725	C	G	6344725	2	3	722	1	0	0	0	0	0	0	0	1	3075	639	23	3		3	CD9	12	6344725	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	3415379	6344725	127507170	114	63510										
GRIN2B	0	genome.wustl.edu	37	chr12	13724845	13724845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atatttctctctgtgctgccGttgggcacggtcccaaagcg	11	12	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	13724845	13724845	G	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.2064	p.N688	0.992	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	62	0	0	75	24	24.24	-	-	-	A	13724845	G	A	13724845	2	1	722	1	0	0	0	0	0	0	0	1	6831	1136	40	1		1	GRIN2B	12	13724845	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	7380120	13724845	120127050	115	63511										
KIAA0528	0	genome.wustl.edu	37	chr12	22677460	22677460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atttgatgcccttggtgtgcGaattcgatcaatccactgat	9	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	22677460	22677460	G	A	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.547	p.R183C	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	68	0	0	78	11	12.22	-	-	-	A	22677460	G	A	22677460	3	1	722	1	0	0	0	0	1	0	0	0	8234	1058	37	1	2535	1	KIAA0528	12	22677460	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	8952615	22677460	111174435	116	63512										
GRIP1	0	genome.wustl.edu	37	chr12	66932939	66932939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gctgatgatctcgtcatggcGgaatttggccaggttgattc	13	8	2	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	66932939	66932939	G	A	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	missense	c.337	p.R113C	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	82	0	0	60	23	27.71	-	-	-	A	66932939	G	A	66932939	3	1	722	1	0	0	0	0	1	0	0	0	6838	1116	39	1	2977	1	GRIP1	12	66932939	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	44255479	66932939	66918956	117	63513										
TPH2	0	genome.wustl.edu	37	chr12	72335393	72335393	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cctaactctggcaaaaatgaCgacaaaggcaacaagggaag	10	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	72335393	72335393	C	T	SNP	TPH2	ENST00000333850	human	ensembl	69_37n	1	known	silent	c.135	p.D45	0.918	pirsf_Tyrosine_3-monooxygenase-like	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	43	0	0	50	12	19.35	-	-	-	T	72335393	C	T	72335393	2	4	722	1	0	0	0	0	0	0	0	1	16498	535	19	1		1	TPH2	12	72335393	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	5402454	72335393	61516502	118	63514										
SVOP	0	genome.wustl.edu	37	chr12	109311864	109311864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgaaagcctccagaaataaaCgctcttgcaatgaagagtaa	8	8	1	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	109311864	109311864	C	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	missense	c.1109	p.R370H	0.996	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	104	0	0	103	13	11.21	-	-	-	T	109311864	C	T	109311864	3	4	722	1	0	0	0	0	1	0	0	0	15514	523	19	1	353	1	SVOP	12	109311864	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	36976471	109311864	24540031	119	63515										
WDR66	0	genome.wustl.edu	37	chr12	122413586	122413586	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttggcttttacccatctgaaGagaaggtagggagaacgaaa	12	6	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	122413586	122413586	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.3001	p.E1001K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	48	0	0	24	27	52.94	-	-	-	A	122413586	G	A	122413586	3	1	722	1	0	0	0	0	1	0	0	0	17414	943	33	2	3130	2	WDR66	12	122413586	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	13101722	122413586	11438309	120	63516										
EP400	0	genome.wustl.edu	37	chr12	132474593	132474593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aagagcagagcagactgaggCggatagccgcctccacggcc	14	13	0	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	132474593	132474593	C	T	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	missense	c.2602	p.R868W	0.999	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	22	0	0	19	5	20.83	-	-	-	T	132474593	C	T	132474593	3	4	722	1	0	0	0	0	1	0	0	0	5186	759	27	1	2517	1	EP400	12	132474593	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	10061007	132474593	1377302	121	63517										
ANKLE2	0	genome.wustl.edu	37	chr12	133324459	133324459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtacaggtccaccacgtaacGgatacgcttctgcagcatgg	11	12	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	12	133324459	133324459	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.1189	p.R397C	0.012	superfamily_Ankyrin_rpt-contain_dom	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	89	0	0	51	16	23.88	-	-	-	A	133324459	G	A	133324459	3	1	722	1	0	0	0	0	1	0	0	0	633	1116	39	1	1663	1	ANKLE2	12	133324459	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	849866	133324459	527436	122	63518										
PSPC1	0	genome.wustl.edu	37	chr13	20315754	20315754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctcttggtttctgagttcttCcaagcgtctgagttcttctt	8	10	6	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	13	20315754	20315754	C	T	SNP	PSPC1	ENST00000338910	human	ensembl	69_37n	-1	known	missense	c.1003	p.E335K	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390	133	0	0	46	92	66.67	-	-	-	T	20315754	C	T	20315754	3	4	722	1	0	0	0	0	1	0	0	0	12796	864	30	2	588	2	PSPC1	13	20315754	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		20315754	94854124	123	63519										
DNAJC3	0	genome.wustl.edu	37	chr13	96443192	96443192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agagccagcaaggaggcggcGgcaaccctttccacagaagc	13	13	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	13	96443192	96443192	G	A	SNP	DNAJC3	ENST00000376795	human	ensembl	69_37n	1	known	missense	c.1423	p.G475S	0.926	NULL	pfam_TPR-1,pfam_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC3	HGNC	ENSG00000102580	43	0	0	31	11	26.19	-	-	-	A	96443192	G	A	96443192	3	1	722	1	0	0	0	0	1	0	0	0	4682	1116	39	1	1469	1	DNAJC3	13	96443192	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	76127438	96443192	18726686	124	63520										
RPGRIP1	0	genome.wustl.edu	37	chr14	21789487	21789487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgagttgcaagtatcacacGcagagaccacattggaacta	9	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	14	21789487	21789487	G	A	SNP	RPGRIP1	ENST00000206660	human	ensembl	69_37n	1	known	missense	c.1537	p.A513T	1.000	NULL	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	68	0	0	69	21	23.33	-	-	-	A	21789487	G	A	21789487	3	1	722	1	0	0	0	0	1	0	0	0	13635	1087	38	1	1583	1	RPGRIP1	14	21789487	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		21789487	85560053	125	63521										
PPP2R3C	0	genome.wustl.edu	37	chr14	35568559	35568559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	catctaattgtggcaacgtaGggataagttccaatatgtag	10	6	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	14	35568559	35568559	G	T	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.605	p.P202H	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	37	0	0	33	7	17.5	-	-	-	T	35568559	G	T	35568559	3	4	722	1	0	0	0	0	1	0	0	0	12467	1000	35	4	784	4	PPP2R3C	14	35568559	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	13779072	35568559	71780981	126	63522										
SNAPC1	0	genome.wustl.edu	37	chr14	62242911	62242911	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctcagcttgataaaggatgaTttttttgacaatattaagaa							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	14	62242911	62242911	T	-	DEL	SNAPC1	ENST00000216294	human	ensembl	69_37n	1	known	frame_shift_del	c.633	p.F213fs	0.961	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	48	0	0	56	15	21.13	-	-	-	-	62242911	T	-	62242911	7	5	722	1	0	1	0	1	0	0	0	0	14923	1490	52	0	651	0	SNAPC1	14	62242911	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	26674352	62242911	45106629	127	63523										
CCDC88C	0	genome.wustl.edu	37	chr14	91780360	91780360	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctgagcttgccattggcctcCgtcaccgtctggtggagggc	14	13	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	14	91780360	91780360	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	silent	c.1800	p.T600	0.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	98	0	0	53	17	24.29	-	-	-	T	91780360	C	T	91780360	2	4	722	1	0	0	0	0	0	0	0	1	2892	639	23	1		1	CCDC88C	14	91780360	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	29537449	91780360	15569180	128	63524										
OR4F6	0	genome.wustl.edu	37	chr15	102345983	102345983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcctgggactctctgactcgCggaagatccagctcctcctc	9	16	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	15	102345983	102345983	C	T	SNP	OR4F6	ENST00000328882	human	ensembl	69_37n	1	known	missense	c.61	p.R21W	0.006	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140	119	0	0	133	38	22.22	-	-	-	T	102345983	C	T	102345983	3	4	722	1	0	0	0	0	1	0	0	0	11139	759	27	1	63	1	OR4F6	15	102345983	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		102345983	185409	129	63525										
HAGH	0	genome.wustl.edu	37	chr16	1869958	1869958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccgatacggtcgtcacccccGtacaccttcagtcccgactc	7	19	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	1869958	1869958	G	A	SNP	HAGH	ENST00000564445	human	ensembl	69_37n	-1	known	missense	c.163	p.R55W	0.857	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HAGH	HGNC	ENSG00000063854	54	0	0	38	7	15.56	-	-	-	A	1869958	G	A	1869958	3	1	722	1	0	0	0	0	1	0	0	0	6996	1140	40	1	578	1	HAGH	16	1869958	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		1869958	88484795	130	63526										
C16orf5	0	genome.wustl.edu	37	chr16	4562821	4562821	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	caacagaagaaacccagcacGaaattcatcaagccaatctc	5	13	3	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	4562821	4562821	G	A	SNP	C16orf5	ENST00000399599	human	ensembl	69_37n	-1	known	silent	c.486	p.F162	0.795	pfam_LITAF,smart_LITAF	pfam_LITAF,smart_LITAF	-	no_errors	C16orf5	HGNC	ENSG00000089486	37	0	0	39	9	18.75	-	-	-	A	4562821	G	A	4562821	2	1	722	1	0	0	0	0	0	0	0	1	1830	1049	37	1		1	C16orf5	16	4562821	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2692863	4562821	85791932	131	63527										
TXNDC11	0	genome.wustl.edu	37	chr16	11773171	11773172	+	Frame_Shift_Del	DEL	CT	CT	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcaggctgcttggggtggacCtctctctgggccgccaggct							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	11773171	11773172	CT	-	DEL	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	frame_shift_del	c.2838_2837	p.E946fs	0.012:0.006	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	22	0	0	31	5	13.89	-	-	-	-	11773172	CT	-	11773171	7	5	722	1	0	1	0	1	0	0	0	0	16889	680	24	0	123	0	TXNDC11	16	11773171	Frame_Shift_Del	DEL	CT	TCGA-D8-A1Y1-01A-21D-A14K-09	7210350	11773171	78581582	132	63528										
MKL2	0	genome.wustl.edu	37	chr16	14354864	14354864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cagtgaatacagtggtgtccCggccaccaccccaagtccaa	9	15	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	14354864	14354864	C	T	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	missense	c.2830	p.R944W	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	55	0	0	67	15	18.29	-	-	-	T	14354864	C	T	14354864	3	4	722	1	0	0	0	0	1	0	0	0	9673	643	23	1	2771	1	MKL2	16	14354864	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2581693	14354864	75999889	133	63529										
ACSM2A	0	genome.wustl.edu	37	chr16	20487095	20487095	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcctatggccagacagaaacGgtacctgttcccaggggaac	11	12	0	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	20487095	20487095	G	A	SNP	ACSM2A	ENST00000219054	human	ensembl	69_37n	1	known	silent	c.1098	p.T366	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747	46	0	0	64	10	13.33	-	-	-	A	20487095	G	A	20487095	2	1	722	1	0	0	0	0	0	0	0	1	183	1130	39	1		1	ACSM2A	16	20487095	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	6132231	20487095	69867658	134	63530										
PRR14	0	genome.wustl.edu	37	chr16	30664308	30664308	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cctcttccaccctgaggcggCgatcaaggacaacccctggc	10	17	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	30664308	30664308	C	T	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	nonsense	c.388	p.R130*	0.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	27	0	0	36	8	18.18	-	-	-	T	30664308	C	T	30664308	4	4	722	1	0	0	0	0	0	1	0	0	12667	760	27	1	402	1	PRR14	16	30664308	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	10177213	30664308	59690445	135	63531										
TOX3	0	genome.wustl.edu	37	chr16	52484428	52484428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gatcagggagggatcctgccGgtactgggacacttgtgtgt	16	8	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	52484428	52484428	G	A	SNP	TOX3	ENST00000219746	human	ensembl	69_37n	-1	known	missense	c.439	p.R147W	0.998	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX3	HGNC	ENSG00000103460	45	0	0	29	11	27.5	-	-	-	A	52484428	G	A	52484428	3	1	722	1	0	0	0	0	1	0	0	0	16475	1115	39	1	1307	1	TOX3	16	52484428	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	21820120	52484428	37870325	136	63532										
MT1M	0	genome.wustl.edu	37	chr16	56667262	56667262	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttccttgcaggtgtctcctgCgcctgcaccggctcctgcac	10	17	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	56667262	56667262	C	T	SNP	MT1M	ENST00000379818	human	ensembl	69_37n	1	known	silent	c.39	p.C13	0.528	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1M	HGNC	ENSG00000205364	91	0	0	49	23	31.51	-	-	-	T	56667262	C	T	56667262	2	4	722	1	0	0	0	0	0	0	0	1	9975	776	27	1		1	MT1M	16	56667262	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	4182834	56667262	33687491	137	63533										
CDH1	0	genome.wustl.edu	37	chr16	68856129	68856129	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cattcagtacaacgacccaaGtgggtacctgagttttattt	8	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	68856129	68856129	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.1936+1	e12+1	0.996	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	34	0	0	12	17	58.62	-	-	-	T	68856129	G	T	68856129	5	4	722	1	0	0	0	0	0	0	1	0	3124	1043	36	4	1983	4	CDH1	16	68856129	Splice_Site	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	12188867	68856129	21498624	138	63534										
ZFHX3	0	genome.wustl.edu	37	chr16	72830903	72830904	+	Frame_Shift_Del	DEL	CT	CT	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctcccccctcggcgctgtccCtctctctctggctttctttt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	72830903	72830904	CT	-	DEL	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	frame_shift_del	c.5678_5677	p.R1893fs	0.999:0.991	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	90	0	0	40	44	52.38	-	-	-	-	72830904	CT	-	72830903	7	5	722	1	0	1	0	1	0	0	0	0	17730	681	24	0	5441	0	ZFHX3	16	72830903	Frame_Shift_Del	DEL	CT	TCGA-D8-A1Y1-01A-21D-A14K-09	3974774	72830903	17523850	139	63535										
CHST5	0	genome.wustl.edu	37	chr16	75563057	75563057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccagagttctcagtcaggcGatgcccagctgaagtggtct	12	12	3	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	16	75563057	75563057	G	A	SNP	CHST5	ENST00000541075	human	ensembl	69_37n	-1	known	missense	c.1244	p.S415L	0.139	NULL	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702	10	0	0	2	5	71.43	-	-	-	A	75563057	G	A	75563057	3	1	722	1	0	0	0	0	1	0	0	0	3436	1059	37	1	13	1	CHST5	16	75563057	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2732154	75563057	14791696	140	63536										
KCNAB3	0	genome.wustl.edu	37	chr17	7828433	7828433	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	accctccataggacagttggGgtctgagcgattggcaaaga	13	9	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	7828433	7828433	G	T	SNP	KCNAB3	ENST00000303790	human	ensembl	69_37n	-1	known	missense	c.607	p.P203T	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049	73	0	0	36	9	20	-	-	-	T	7828433	G	T	7828433	3	4	722	1	0	0	0	0	1	0	0	0	8065	1232	43	4	635	4	KCNAB3	17	7828433	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09		7828433	73366777	141	63537										
MYH3	0	genome.wustl.edu	37	chr17	10544483	10544483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cctccaggacaccgttacacCgcagctggtgcagaacaagg	11	14	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	10544483	10544483	C	T	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	missense	c.2084	p.R695Q	0.988	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	51	0	0	32	15	31.91	-	-	-	T	10544483	C	T	10544483	3	4	722	1	0	0	0	0	1	0	0	0	10108	652	23	1	3830	1	MYH3	17	10544483	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2716050	10544483	70650727	142	63538										
DNAH9	0	genome.wustl.edu	37	chr17	11783516	11783516	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gagaagtcattaaaaaaggaCggtaagactcagctgtgttg	12	5	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	11783516	11783516	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	nonsense	c.10600	p.R3534*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	69	0	0	24	10	29.41	-	-	-	T	11783516	C	T	11783516	4	4	722	1	0	0	0	0	0	1	0	0	4643	550	19	1	10814	1	DNAH9	17	11783516	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	1239033	11783516	69411694	143	63539										
MAP2K4	0	genome.wustl.edu	37	chr17	12011109	12011109	+	Frame_Shift_Del	DEL	T	T	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atatttgttattttatagggTgactgttggatctgtatgga							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	12011109	12011109	T	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_del	c.549	p.D184fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	98	0	0	37	38	48.1	-	-	-	-	12011109	T	-	12011109	7	5	722	1	0	1	0	1	0	0	0	0	9310	1683	59	0	534	0	MAP2K4	17	12011109	Frame_Shift_Del	DEL	T	TCGA-D8-A1Y1-01A-21D-A14K-09	227593	12011109	69184101	144	63540										
NOS2	0	genome.wustl.edu	37	chr17	26107923	26107923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cttgggcttccagcccaggtCgatgcacagctggggaacaa	13	12	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	26107923	26107923	C	T	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.874	p.D292N	0.982	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	23	0	0	14	9	39.13	-	-	-	T	26107923	C	T	26107923	3	4	722	1	0	0	0	0	1	0	0	0	10615	884	31	1	2663	1	NOS2	17	26107923	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	14096814	26107923	55087287	145	63541										
MYO18A	0	genome.wustl.edu	37	chr17	27420379	27420379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gagcttgccctccagctcccGcttctctcgcagaaccttct	7	18	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	27420379	27420379	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.4888	p.R1630W	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	55	0	0	37	9	19.57	-	-	-	A	27420379	G	A	27420379	3	1	722	1	0	0	0	0	1	0	0	0	10137	1086	38	1	1320	1	MYO18A	17	27420379	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	1312456	27420379	53774831	146	63542										
TMIGD1	0	genome.wustl.edu	37	chr17	28645921	28645922	+	Frame_Shift_Del	DEL	CA	CA	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgggctctattggtacaccCacagttttatctgtaggaaa							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	28645921	28645922	CA	-	DEL	TMIGD1	ENST00000328886	human	ensembl	69_37n	-1	known	frame_shift_del	c.651_650	p.V217fs	0.000:0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TMIGD1	HGNC	ENSG00000182271	91	0	0	86	18	17.31	-	-	-	-	28645922	CA	-	28645921	7	5	722	1	0	1	0	1	0	0	0	0	16325	581	21	0	149	0	TMIGD1	17	28645921	Frame_Shift_Del	DEL	CA	TCGA-D8-A1Y1-01A-21D-A14K-09	1225542	28645921	52549289	147	63543										
DNAJC7	0	genome.wustl.edu	37	chr17	40134299	40134299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggtgcatcaaggcccgtttcCgataagctttcttgatctcg	10	11	3	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	40134299	40134299	C	T	SNP	DNAJC7	ENST00000457167	human	ensembl	69_37n	-1	known	missense	c.1205	p.R402Q	1.000	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_TPR-1,pfam_TPR_2,pfam_DnaJ_N,superfamily_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC7	HGNC	ENSG00000168259	75	0	0	64	13	16.88	-	-	-	T	40134299	C	T	40134299	3	4	722	1	0	0	0	0	1	0	0	0	4689	652	23	1	295	1	DNAJC7	17	40134299	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	11488378	40134299	41060911	148	63544										
UBTF	0	genome.wustl.edu	37	chr17	42287046	42287046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgggttctccctggaatttcAtcttcttggaagaatttgta	9	7	4	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	42287046	42287046	A	G	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	missense	c.1682	p.M561T	1.000	superfamily_HMG_superfamily,superfamily_ARM-type_fold	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	75	0	0	59	15	20.27	-	-	-	G	42287046	A	G	42287046	3	3	722	1	0	0	0	0	1	0	0	0	17006	217	8	5	636	5	UBTF	17	42287046	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	2152747	42287046	38908164	149	63545										
TANC2	0	genome.wustl.edu	37	chr17	61396410	61396410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcccaggaactccggaaatgCgcaggcggcaggaggaggct	17	11	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	61396410	61396410	C	T	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.1312	p.R438C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	32	0	0	25	11	30.56	-	-	-	T	61396410	C	T	61396410	3	4	722	1	0	0	0	0	1	0	0	0	15637	768	27	1	1346	1	TANC2	17	61396410	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	19109364	61396410	19798800	150	63546										
ACE	0	genome.wustl.edu	37	chr17	61557230	61557230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atcccgctgaaaccgctgtaCgaggatttcactgccctcag	9	14	2	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	61557230	61557230	C	T	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	silent	c.612	p.Y204	0.329	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	33	0	0	16	4	20	-	-	-	T	61557230	C	T	61557230	2	4	722	1	0	0	0	0	0	0	0	1	136	547	19	1		1	ACE	17	61557230	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	160820	61557230	19637980	151	63547										
ABCA10	0	genome.wustl.edu	37	chr17	67183897	67183897	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctgcatagatttgtcgtctcCagagagctgcactactgaca	9	11	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	17	67183897	67183897	C	T	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	nonsense	c.2255	p.W752*	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	72	0	0	88	27	23.48	-	-	-	T	67183897	C	T	67183897	4	4	722	1	0	0	0	0	0	1	0	0	29	595	21	4	2460	4	ABCA10	17	67183897	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	5626667	67183897	14011313	152	63548										
LRRC30	0	genome.wustl.edu	37	chr18	7231524	7231524	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ttgtcaacatgaactgcctgAcagaggtgccggccgagctg	13	11	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	18	7231524	7231524	A	G	SNP	LRRC30	ENST00000383467	human	ensembl	69_37n	1	known	missense	c.388	p.T130A	0.856	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422	21	0	0	20	10	33.33	-	-	-	G	7231524	A	G	7231524	3	3	722	1	0	0	0	0	1	0	0	0	9051	275	10	5	390	5	LRRC30	18	7231524	Missense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09		7231524	70845724	153	63549										
ATP8B1	0	genome.wustl.edu	37	chr18	55355712	55355712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aggtcccagttgatgaagtgActctgtccaagacgaatcac	10	10	2	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	18	55355712	55355712	A	G	SNP	ATP8B1	ENST00000283684	human	ensembl	69_37n	-1	known	silent	c.1248	p.S416	0.994	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B1	HGNC	ENSG00000081923	109	0	0	106	16	13.11	-	-	-	G	55355712	A	G	55355712	2	3	722	1	0	0	0	0	0	0	0	1	1198	272	10	5		5	ATP8B1	18	55355712	Silent	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	48124188	55355712	22721536	154	63550										
MC4R	0	genome.wustl.edu	37	chr18	58039219	58039219	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	caccgagtcaatgacattatCaatattcactgtgaaactct	5	10	4	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	18	58039219	58039219	C	T	SNP	MC4R	ENST00000299766	human	ensembl	69_37n	-1	known	missense	c.364	p.D122N	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603	24	0	0	20	9	31.03	-	-	-	T	58039219	C	T	58039219	3	4	722	1	0	0	0	0	1	0	0	0	9437	826	29	2	638	2	MC4R	18	58039219	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2683507	58039219	20038029	155	63551										
C19orf35	0	genome.wustl.edu	37	chr19	2280862	2280862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgcttaccaaggttgctataCgtgggctgagtcgaccaggt	13	9	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	2280862	2280862	C	T	SNP	C19orf35	ENST00000342063	human	ensembl	69_37n	-1	known	silent	c.69	p.T23	0.003	NULL	NULL	-	no_errors	C19orf35	HGNC	ENSG00000188305	44	0	0	5	6	54.55	-	-	-	T	2280862	C	T	2280862	2	4	722	1	0	0	0	0	0	0	0	1	1938	523	19	1		1	C19orf35	19	2280862	Silent	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		2280862	56848121	156	63552										
ICAM3	0	genome.wustl.edu	37	chr19	10445930	10445930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccaggtagacctgggcctctGaggctggaaaaagcccgtct	13	12	2	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	10445930	10445930	G	A	SNP	ICAM3	ENST00000160262	human	ensembl	69_37n	-1	known	missense	c.749	p.S250L	0.000	NULL	pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM3	HGNC	ENSG00000076662	58	0	0	16	9	36	-	-	-	A	10445930	G	A	10445930	3	1	722	1	0	0	0	0	1	0	0	0	7535	1294	45	2	910	2	ICAM3	19	10445930	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	8165068	10445930	48683053	157	63553										
ICAM3	0	genome.wustl.edu	37	chr19	10449539	10449539	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcagagctgggacaatcagtActgcagttcacaaacaggga	11	9	3	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	10449539	10449539	A	T	SNP	ICAM3	ENST00000590569	human	ensembl	69_37n	-1	putative	nonsense	c.129	p.C43*	0.001	pfam_ICAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N	-	no_stop_codon:bad_bp_length_for_coding_region	ICAM3	HGNC	ENSG00000076662	44	0	0	19	21	52.5	-	-	-	T	10449539	A	T	10449539	4	4	722	1	0	0	0	0	0	1	0	0	7535	388	14	5	1505	5	ICAM3	19	10449539	Nonsense_Mutation	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	3609	10449539	48679444	158	63554										
KIRREL2	0	genome.wustl.edu	37	chr19	36357343	36357343	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccgggactccccccttcccAtatgctgccttccccacacc	5	23	0	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	36357343	36357343	A	G	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	silent	c.2076	p.P692	0.432	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	51	0	0	37	12	24.49	-	-	-	G	36357343	A	G	36357343	2	3	722	1	0	0	0	0	0	0	0	1	8378	204	8	5		5	KIRREL2	19	36357343	Silent	SNP	A	TCGA-D8-A1Y1-01A-21D-A14K-09	25907804	36357343	22771640	159	63555										
RASGRP4	0	genome.wustl.edu	37	chr19	38901798	38901798	+	Frame_Shift_Del	DEL	G	G	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtggatgggacaggagctccGgggggtcctgcatcgccctt							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	38901798	38901798	G	-	DEL	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	frame_shift_del	c.1809	p.G604fs	0.000	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	91	0	0	57	14	19.72	-	-	-	-	38901798	G	-	38901798	7	5	722	1	0	1	0	1	0	0	0	0	13160	1103	39	0	224	0	RASGRP4	19	38901798	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2544455	38901798	20227185	160	63556										
PAPL	0	genome.wustl.edu	37	chr19	39591673	39591673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gctccaacgcagatctggacGactgcacacgacatgaaagc	10	13	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	39591673	39591673	G	A	SNP	PAPL	ENST00000331256	human	ensembl	69_37n	1	known	missense	c.892	p.D298N	1.000	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	AC011443.1	Clone_based_ensembl_gene	ENSG00000183760	26	0	0	18	7	28	-	-	-	A	39591673	G	A	39591673	3	1	722	1	0	0	0	0	1	0	0	0	11500	1058	37	1	918	1	PAPL	19	39591673	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	689875	39591673	19537310	161	63557										
CCDC97	0	genome.wustl.edu	37	chr19	41825700	41825700	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	agcgtctgctccaacagcagGaggaggaggaggcctgcttg	16	10	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	41825700	41825700	G	C	SNP	CCDC97	ENST00000269967	human	ensembl	69_37n	1	known	missense	c.724	p.E242Q	1.000	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039	24	0	0	20	7	25.93	-	-	-	C	41825700	G	C	41825700	3	2	722	1	0	0	0	0	1	0	0	0	2902	1175	41	2	734	2	CCDC97	19	41825700	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2234027	41825700	17303283	162	63558										
ZNF223	0	genome.wustl.edu	37	chr19	44570961	44570961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atatggaaaaggcttcattcGtaggctggatttgtgtaagc	12	5	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	44570961	44570961	G	A	SNP	ZNF223	ENST00000591793	human	ensembl	69_37n	1	known	missense	c.1310	p.R437H	0.000	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC084219.2	Clone_based_vega_gene	ENSG00000267022	31	0	0	44	14	24.14	-	-	-	A	44570961	G	A	44570961	3	1	722	1	0	0	0	0	1	0	0	0	17873	1145	40	1	994	1	ZNF223	19	44570961	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	2745261	44570961	14558022	163	63559										
EML2	0	genome.wustl.edu	37	chr19	46130077	46130077	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtggggtggaaggtggccacCaatacagcctcattggagca	15	9	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	46130077	46130077	C	T	SNP	EML2	ENST00000586195	human	ensembl	69_37n	-1	known	nonsense	c.347	p.W116*	1.000	NULL	NULL	-	no_errors	EML2	HGNC	ENSG00000125746	27	0	0	27	7	20.59	-	-	-	T	46130077	C	T	46130077	4	4	722	1	0	0	0	0	0	1	0	0	5134	593	21	4	1370	4	EML2	19	46130077	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	1559116	46130077	12998906	164	63560										
EHD2	0	genome.wustl.edu	37	chr19	48229479	48229479	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgaagagggcccggctggtgCgagtgagtagtcctgagggc	19	8	0	4			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	48229479	48229479	C	T	SNP	EHD2	ENST00000263277	human	ensembl	69_37n	1	known	nonsense	c.913	p.R305*	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	18	0	0	13	4	23.53	-	-	-	T	48229479	C	T	48229479	4	4	722	1	0	0	0	0	0	1	0	0	5013	760	27	1	923	1	EHD2	19	48229479	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	2099402	48229479	10899504	165	63561										
HRC	0	genome.wustl.edu	37	chr19	49656895	49656895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cttgtcttcctcttcttcctCctcctggttcaggctgaggc	8	15	4	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	49656895	49656895	C	T	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.1600	p.E534K	0.990	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	50	0	0	22	31	58.49	-	-	-	T	49656895	C	T	49656895	3	4	722	1	0	0	0	0	1	0	0	0	7403	864	30	2	523	2	HRC	19	49656895	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	1427416	49656895	9472088	166	63562										
MED25	0	genome.wustl.edu	37	chr19	50335233	50335233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggatgccaacaccaagctgaCgcggtcactgccctgccagg	12	15	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	50335233	50335233	C	T	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	missense	c.1271	p.T424M	0.997	pfam_Mediator_Med25	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	56	0	0	51	10	16.39	-	-	-	T	50335233	C	T	50335233	3	4	722	1	0	0	0	0	1	0	0	0	9514	536	19	1	1313	1	MED25	19	50335233	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	678338	50335233	8793750	167	63563										
VRK3	0	genome.wustl.edu	37	chr19	50519394	50519394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	atgccgcttggatacttttgCcacagtctggacagaaggag	12	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	50519394	50519394	C	T	SNP	VRK3	ENST00000316763	human	ensembl	69_37n	-1	known	missense	c.26	p.G9D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK3	HGNC	ENSG00000105053	56	0	0	61	8	11.59	-	-	-	T	50519394	C	T	50519394	3	4	722	1	0	0	0	0	1	0	0	0	17318	739	26	4	1446	4	VRK3	19	50519394	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	184161	50519394	8609589	168	63564										
KLK1	0	genome.wustl.edu	37	chr19	51323226	51323227	+	Frame_Shift_Ins	INS	-	-	T													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtcaccttctggacgtgggcINSttttttgcactcatcattag							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	51323226	51323227	-	T	INS	KLK1	ENST00000301420	human	ensembl	69_37n	-1	known	frame_shift_ins	c.562_561	p.A187fs	0.935:0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK1	HGNC	ENSG00000167748	63	0	0	38	13	25.49	-	-	-	T	51323227	-	T	51323226	7	5	722	1	0	1	1	0	0	0	0	0	8450	797	28	0	234	0	KLK1	19	51323226	Frame_Shift_Ins	INS	-	TCGA-D8-A1Y1-01A-21D-A14K-09	803832	51323226	7805757	169	63565										
NLRP2	0	genome.wustl.edu	37	chr19	55494672	55494672	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cctgggacattggggacgtaCagaagctgctttccggagta	14	9	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	19	55494672	55494672	C	T	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	nonsense	c.1606	p.Q536*	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	34	0	0	31	5	13.89	-	-	-	T	55494672	C	T	55494672	4	4	722	1	0	0	0	0	0	1	0	0	10549	479	17	4	1624	4	NLRP2	19	55494672	Nonsense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	4171446	55494672	3634311	170	63566										
JAG1	0	genome.wustl.edu	37	chr20	10644610	10644610	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gtccacagaagcgatacttaCgaacggtgtcattactggaa	10	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	20	10644610	10644610	C	T	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	splice_site	c.439+1	e3+1	1.000	-	-	-	no_errors	JAG1	HGNC	ENSG00000101384	73	0	0	78	16	17.02	-	-	-	T	10644610	C	T	10644610	5	4	722	1	0	0	0	0	0	0	1	0	7988	550	19	1	3312	1	JAG1	20	10644610	Splice_Site	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		10644610	52380910	171	63567										
C20orf112	0	genome.wustl.edu	37	chr20	31041163	31041163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cttgaggtacgtgcggatgcGcttgcgggcccgctcctgga	16	12	0	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	20	31041163	31041163	G	A	SNP	C20orf112	ENST00000359676	human	ensembl	69_37n	-1	known	missense	c.709	p.R237C	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183	43	0	0	37	8	17.78	-	-	-	A	31041163	G	A	31041163	3	1	722	1	0	0	0	0	1	0	0	0	2101	1087	38	1	617	1	C20orf112	20	31041163	Missense_Mutation	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	20396553	31041163	31984357	172	63568										
SULF2	0	genome.wustl.edu	37	chr20	46318931	46318931	+	Frame_Shift_Del	DEL	G	G	-													0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ggctgaatcctcagggccgtGgggggctgcatggctgatga							TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	20	46318931	46318931	G	-	DEL	SULF2	ENST00000359930	human	ensembl	69_37n	-1	known	frame_shift_del	c.676	p.H226fs	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562	115	0	0	65	46	39.66	-	-	-	-	46318931	G	-	46318931	7	5	722	1	0	1	0	1	0	0	0	0	15462	1348	47	0	2004	0	SULF2	20	46318931	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y1-01A-21D-A14K-09	15277768	46318931	16706589	173	63569										
PCNT	0	genome.wustl.edu	37	chr21	47786639	47786639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gcagctcctgtcagtgacggCggagctcgaggccagacacc	14	14	1	2			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	21	47786639	47786639	C	T	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.2750	p.A917V	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	19	0	0	4	5	55.56	-	-	-	T	47786639	C	T	47786639	3	4	722	1	0	0	0	0	1	0	0	0	11663	768	27	1	2808	1	PCNT	21	47786639	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		47786639	343256	174	63570										
AP1B1	0	genome.wustl.edu	37	chr22	29726657	29726657	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ctggaactgggcctcattctCattgggaatatccttccatg	9	11	2	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	22	29726657	29726657	C	T	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.2566	p.E856K	1.000	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	43	0	0	10	18	64.29	-	-	-	T	29726657	C	T	29726657	3	4	722	1	0	0	0	0	1	0	0	0	732	835	29	2	299	2	AP1B1	22	29726657	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		29726657	21577909	175	63571										
CPT1B	0	genome.wustl.edu	37	chr22	51015421	51015421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	cccgtggagaagatggccatGctgagaagtgcccgggtctg	16	10	1	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	22	51015421	51015421	G	A	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	silent	c.324	p.S108	1.000	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	60	0	0	22	8	26.67	-	-	-	A	51015421	G	A	51015421	2	1	722	1	0	0	0	0	0	0	0	1	3862	1310	46	4		4	CPT1B	22	51015421	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	21288764	51015421	289145	176	63572										
TLR7	0	genome.wustl.edu	37	chrX	12906029	12906029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tgtctggtgggttaaccataCggaggtgactattccttacc	11	9	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	X	12906029	12906029	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.2402	p.T801M	0.998	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	98	0	0	40	16	28.57	-	-	-	T	12906029	C	T	12906029	3	4	722	1	0	0	0	0	1	0	0	0	16051	536	19	1	2408	1	TLR7	23	12906029	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09		12906029	142364531	177	63573										
FAM47C	0	genome.wustl.edu	37	chrX	37026807	37026807	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	gccctgttttccaagctctcGccagcacagccagcacggaa	9	16	1	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	X	37026807	37026807	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	silent	c.324	p.S108	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	74	0	0	57	7	10.94	-	-	-	A	37026807	G	A	37026807	2	1	722	1	0	0	0	0	0	0	0	1	5617	1074	38	1		1	FAM47C	23	37026807	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	24120778	37026807	118243753	178	63574										
TCEAL6	0	genome.wustl.edu	37	chrX	101396134	101396134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	ccttatcttccagttgtcccTcatcacctggctctccctca	4	18	5	0			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	X	101396134	101396134	T	G	SNP	TCEAL6	ENST00000372773	human	ensembl	69_37n	-1	known	missense	c.170	p.E57A	0.101	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071	135	0	0	83	12	12.63	-	-	-	G	101396134	T	G	101396134	3	3	722	1	0	0	0	0	1	0	0	0	15770	1551	54	5	385	5	TCEAL6	23	101396134	Missense_Mutation	SNP	T	TCGA-D8-A1Y1-01A-21D-A14K-09	64369327	101396134	53874426	179	63575										
L1CAM	0	genome.wustl.edu	37	chrX	153133791	153133791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	aagctcctggaggtctcgacCgtccccacgccaggtgatgc	12	15	1	1			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	X	153133791	153133791	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.1675	p.G559S	0.121	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	67	0	0	43	13	23.21	-	-	-	T	153133791	C	T	153133791	3	4	722	1	0	0	0	0	1	0	0	0	8642	652	23	1	2168	1	L1CAM	23	153133791	Missense_Mutation	SNP	C	TCGA-D8-A1Y1-01A-21D-A14K-09	51737657	153133791	2136769	180	63576										
RAB39B	0	genome.wustl.edu	37	chrX	154493388	154493388	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0939226519337017	17	0.79133532817198	1.06070936111537	1.90303738317757	1.00159862272504	1.61004027491836e-05	0.000828747046773766	0	tcttgacccgcggtatcccaGatctggagcttgatgcgttt	11	11	2	3			TCGA-D8-A1Y1-01A-21D-A14K-09	TCGA-D8-A1Y1-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ea6e540-6e2f-48a5-99e3-27a0107d07b7	0400d779-78d9-4645-add6-2a9f94d55e1c	X	154493388	154493388	G	A	SNP	RAB39B	ENST00000369454	human	ensembl	69_37n	-1	known	silent	c.186	p.I62	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961	47	0	0	15	16	51.61	-	-	-	A	154493388	G	A	154493388	2	1	722	1	0	0	0	0	0	0	0	1	13013	932	33	2		2	RAB39B	23	154493388	Silent	SNP	G	TCGA-D8-A1Y1-01A-21D-A14K-09	1359597	154493388	777172	181	63577										
GPR3	0	genome.wustl.edu	37	chr1	27721113	27721113	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ctgtctactgcctgctgggtGatgcccactctccacctctc	8	17	3	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	27721113	27721113	G	A	SNP	GPR3	ENST00000374024	human	ensembl	69_37n	1	known	missense	c.811	p.D271N	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR_orph_rcpt,prints_GPR3_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR3	HGNC	ENSG00000181773	100	0	0	49	10	16.95	-	-	-	A	27721113	G	A	27721113	3	1	723	1	0	0	0	0	1	0	0	0	6736	1290	45	2	813	2	GPR3	1	27721113	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09		27721113	221529508	1	63578										
C1orf173	0	genome.wustl.edu	37	chr1	75055486	75055486	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tttctccgttccttctttaaGaacattctcaaagctttcgt	4	11	3	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	75055486	75055486	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.2005	p.L669F	0.002	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	128	0	0	67	15	18.29	-	-	-	A	75055486	G	A	75055486	3	1	723	1	0	0	0	0	1	0	0	0	2033	942	33	2	2599	2	C1orf173	1	75055486	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	47334373	75055486	174195135	2	63579										
OR10Z1	0	genome.wustl.edu	37	chr1	158576343	158576343	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tctctctgtatctagtcactCtgaccagcaatgtcttcatt	5	12	7	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	158576343	158576343	C	G	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.210	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	130	0	0	64	11	14.67	-	-	-	G	158576343	C	G	158576343	3	3	723	1	0	0	0	0	1	0	0	0	10996	912	32	2	117	2	OR10Z1	1	158576343	Missense_Mutation	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09	83520857	158576343	90674278	3	63580										
SHISA4	0	genome.wustl.edu	37	chr1	201859604	201859604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ccaagaccatagcaggcatcGcctcagctgtgatcctcttt	8	14	2	2			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	201859604	201859604	G	A	SNP	SHISA4	ENST00000362011	human	ensembl	69_37n	1	known	missense	c.268	p.A90T	1.000	NULL	NULL	-	no_errors	SHISA4	HGNC	ENSG00000198892	73	0	0	39	5	11.36	-	-	-	A	201859604	G	A	201859604	3	1	723	1	0	0	0	0	1	0	0	0	14371	1087	38	1	278	1	SHISA4	1	201859604	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	43283261	201859604	47391017	4	63581										
OR2W5	0	genome.wustl.edu	37	chr1	247655261	247655261	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	gggaagttcctgactctcttCtacaccatcgtcattcccag	7	14	3	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	247655261	247655261	C	G	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	21	0	0	5	4	44.44	-	-	-	G	247655261	C	G	247655261	1	3	723	0	1	0	0	0	0	0	0	0	11107	912	32	2		2	OR2W5	1	247655261	RNA	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09	45795657	247655261	1595360	5	63582										
ITPR1	0	genome.wustl.edu	37	chr3	4847896	4847896	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	gttcctctatcatttgttgtAtctggtgatctgtgccatgg	10	8	4	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	3	4847896	4847896	A	G	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.7172	p.Y2391C	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	119	0	0	53	41	43.62	-	-	-	G	4847896	A	G	4847896	3	3	723	1	0	0	0	0	1	0	0	0	7974	449	16	5	7427	5	ITPR1	3	4847896	Missense_Mutation	SNP	A	TCGA-D8-A1Y2-01A-11D-A159-09		4847896	193174534	6	63583										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	81	0	0	31	13	29.55	-	-	-	A	178936091	G	A	178936091	3	1	723	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	174088195	178936091	19086339	7	63584										
KDM3B	0	genome.wustl.edu	37	chr5	137766020	137766020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	gtacctggaccagaccctccGtaagcgactctatgaggagt	11	12	1	2			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	5	137766020	137766020	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.4976	p.R1659H	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	92	0	0	44	12	21.43	-	-	-	A	137766020	G	A	137766020	3	1	723	1	0	0	0	0	1	0	0	0	8181	1145	40	1	5062	1	KDM3B	5	137766020	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09		137766020	43149240	8	63585										
ARAP3	0	genome.wustl.edu	37	chr5	141049557	141049557	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tcctggggctgtatgaggctGaggggttcagggctgttttc	17	7	1	2			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	5	141049557	141049557	G	A	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	silent	c.2181	p.L727	0.998	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	35	0	0	28	13	31.71	-	-	-	A	141049557	G	A	141049557	2	1	723	1	0	0	0	0	0	0	0	1	842	1277	45	2		2	ARAP3	5	141049557	Silent	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	3283537	141049557	39865703	9	63586										
RTN4IP1	0	genome.wustl.edu	37	chr6	107070756	107070756	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	atcaccacgccagagacatcCcgacccagagtcagaggaaa	9	14	2	3			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	6	107070756	107070756	C	A	SNP	RTN4IP1	ENST00000369063	human	ensembl	69_37n	-1	known	silent	c.363	p.R121	0.999	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347	83	0	0	36	4	10	-	-	-	A	107070756	C	A	107070756	2	1	723	1	0	0	0	0	0	0	0	1	13815	610	22	4		4	RTN4IP1	6	107070756	Silent	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09		107070756	64044311	10	63587										
FAM86B1	0	genome.wustl.edu	37	chr8	12043877	12043877	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ttacctgctgcaatgacaacAtctggctggaaggcagagag	12	9	1	2			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	8	12043877	12043877	A	T	SNP	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	missense	c.726	p.D242E	0.367	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	11	0	0	2	3	60	-	-	-	T	12043877	A	T	12043877	3	4	723	1	0	0	0	0	1	0	0	0	5689	214	8	5	278	5	FAM86B1	8	12043877	Missense_Mutation	SNP	A	TCGA-D8-A1Y2-01A-11D-A159-09		12043877	134320145	11	63588										
ACO1	0	genome.wustl.edu	37	chr9	32436286	32436286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	caactcctatggctcccgccGaggtaatgacgccgtcatgg	11	14	1	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	9	32436286	32436286	G	T	SNP	ACO1	ENST00000309951	human	ensembl	69_37n	1	known	missense	c.2138	p.R713L	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729	75	0	0	35	4	10.26	-	-	-	T	32436286	G	T	32436286	3	4	723	1	0	0	0	0	1	0	0	0	146	1058	37	3	2204	3	ACO1	9	32436286	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09		32436286	108777145	12	63589										
KIF20B	0	genome.wustl.edu	37	chr10	91497663	91497664	+	Frame_Shift_Ins	INS	-	-	A													0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tctgaggaggataatttgccINSaaatacacagttagaccttt							TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	10	91497663	91497664	-	A	INS	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	frame_shift_ins	c.3155_3156	p.N1053fs	0.000:0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	37	0	0	11	2	15.38	-	-	-	A	91497664	-	A	91497663	7	5	723	1	0	1	1	0	0	0	0	0	8339	594	21	0	3019	0	KIF20B	10	91497663	Frame_Shift_Ins	INS	-	TCGA-D8-A1Y2-01A-11D-A159-09		91497663	44037084	13	63590										
NBEA	0	genome.wustl.edu	37	chr13	36242576	36242576	+	Frame_Shift_Del	DEL	G	G	-													0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ggggtagtagaggtctggcaGgcctgtgacttcaagcaact							TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	13	36242576	36242576	G	-	DEL	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	frame_shift_del	c.8670	p.A2891fs	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	44	0	0	15	2	11.76	-	-	-	-	36242576	G	-	36242576	7	5	723	1	0	1	0	1	0	0	0	0	10259	991	35	0	8896	0	NBEA	13	36242576	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y2-01A-11D-A159-09		36242576	78927302	14	63591										
MAP4K5	0	genome.wustl.edu	37	chr14	50915497	50915497	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	aaaatgaattcttaccatttCatctcgtgcttctgtttctt	4	9	5	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	50915497	50915497	C	T	SNP	MAP4K5	ENST00000013125	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357K	1.000	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983	139	0	0	52	22	29.73	-	-	-	T	50915497	C	T	50915497	3	4	723	1	0	0	0	0	1	0	0	0	9334	835	29	2	1543	2	MAP4K5	14	50915497	Missense_Mutation	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09		50915497	56434043	15	63592										
DYNC1H1	0	genome.wustl.edu	37	chr14	102449530	102449530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tcctattcagagggcactgcGtttggtggaggcaatttcaa	12	8	2	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	102449530	102449530	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.1136	p.R379H	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	76	0	0	40	7	14.89	-	-	-	A	102449530	G	A	102449530	3	1	723	1	0	0	0	0	1	0	0	0	4876	1145	40	1	1158	1	DYNC1H1	14	102449530	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	51534033	102449530	4900010	16	63593										
ATXN2L	0	genome.wustl.edu	37	chr16	28847726	28847726	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ctttgcttccctccgtcctcGctcagttgtgatccagcagc	8	16	1	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	16	28847726	28847726	G	T	SNP	ATXN2L	ENST00000395547	human	ensembl	69_37n	1	known	silent	c.3219	p.S1073	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488	45	0	0	36	4	10	-	-	-	T	28847726	G	T	28847726	2	4	723	1	0	0	0	0	0	0	0	1	1216	1074	38	3		3	ATXN2L	16	28847726	Silent	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09		28847726	61507027	17	63594										
RARA	0	genome.wustl.edu	37	chr17	38510603	38510603	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	cgagcaggacaccatgacctTctcggacgggctgaccctga	12	14	1	3			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	17	38510603	38510603	T	C	SNP	RARA	ENST00000254066	human	ensembl	69_37n	1	known	missense	c.857	p.F286S	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoic_acid_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARA	HGNC	ENSG00000131759	50	0	0	24	8	25	-	-	-	C	38510603	T	C	38510603	3	2	723	1	0	0	0	0	1	0	0	0	13135	1783	62	5	1046	5	RARA	17	38510603	Missense_Mutation	SNP	T	TCGA-D8-A1Y2-01A-11D-A159-09		38510603	42684607	18	63595										
TUBG1	0	genome.wustl.edu	37	chr17	40762203	40762203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	tcgtggaggagttcgccaccGagggcactgaccgcaaggac	15	12	0	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	17	40762203	40762203	G	A	SNP	TUBG1	ENST00000251413	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG1	HGNC	ENSG00000131462	45	0	0	34	10	22.73	-	-	-	A	40762203	G	A	40762203	3	1	723	1	0	0	0	0	1	0	0	0	16861	1059	37	1	133	1	TUBG1	17	40762203	Missense_Mutation	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09	2251600	40762203	40433007	19	63596										
RIT2	0	genome.wustl.edu	37	chr18	40554095	40554095	+	Frame_Shift_Del	DEL	G	G	-													0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	ctcattgtcaatcctgacctGggtcttataagcatcttctg							TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	18	40554095	40554095	G	-	DEL	RIT2	ENST00000326695	human	ensembl	69_37n	-1	known	frame_shift_del	c.178	p.Q60fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT2	HGNC	ENSG00000152214	60	0	0	16	2	11.11	-	-	-	-	40554095	G	-	40554095	7	5	723	1	0	1	0	1	0	0	0	0	13473	1357	47	0	487	0	RIT2	18	40554095	Frame_Shift_Del	DEL	G	TCGA-D8-A1Y2-01A-11D-A159-09		40554095	37523153	20	63597										
FAM69C	0	genome.wustl.edu	37	chr18	72114301	72114301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	cggcctcgggcatgtcctggCcaccctcccctgcctcctct	9	21	1	0			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	18	72114301	72114301	C	A	SNP	FAM69C	ENST00000343998	human	ensembl	69_37n	-1	known	missense	c.416	p.G139V	0.000	NULL	pfam_Uncharacterised_FAM69,superfamily_Kinase-like_dom	-	no_errors	FAM69C	HGNC	ENSG00000187773	10	0	0	3	5	62.5	-	-	-	A	72114301	C	A	72114301	3	1	723	1	0	0	0	0	1	0	0	0	5649	739	26	4	855	4	FAM69C	18	72114301	Missense_Mutation	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09	31560206	72114301	5962947	21	63598										
EHD2	0	genome.wustl.edu	37	chr19	48239730	48239730	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	aaactgcccgtcatctttgcGaagattcagctggaacatca	8	11	4	1			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	19	48239730	48239730	G	C	SNP	EHD2	ENST00000263277	human	ensembl	69_37n	1	known	silent	c.1020	p.A340	0.795	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	66	0	0	28	7	20	-	-	-	C	48239730	G	C	48239730	2	2	723	1	0	0	0	0	0	0	0	1	5013	1045	37	3		3	EHD2	19	48239730	Silent	SNP	G	TCGA-D8-A1Y2-01A-11D-A159-09		48239730	10889253	22	63599										
KLK3	0	genome.wustl.edu	37	chr19	51361806	51361806	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.347826086956522	8	0.00533323327732915	3.365141187926	3.64556962025316	3.28101265822785	0.131934731934732	0.62934362934363	6	cctcagaaggtgaccaagttCatgctgtgtgctggacgctg	13	10	2	2			TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	19	51361806	51361806	C	T	SNP	KLK3	ENST00000326003	human	ensembl	69_37n	1	known	silent	c.585	p.F195	0.075	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK3	HGNC	ENSG00000142515	60	0	0	31	6	16.22	-	-	-	T	51361806	C	T	51361806	2	4	723	1	0	0	0	0	0	0	0	1	8458	825	29	2		2	KLK3	19	51361806	Silent	SNP	C	TCGA-D8-A1Y2-01A-11D-A159-09	3122076	51361806	7767177	23	63600										
AMY1A	0	genome.wustl.edu	37	chr1	104203222	104203222	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gtacaaaatggcagttggatTtatgcttgctcatccttatg	9	7	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	104203222	104203222	T	A	SNP	AMY1A	ENST00000370083	human	ensembl	69_37n	1	known	missense	c.1025	p.F342Y	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1A	HGNC	ENSG00000237763	47	0	0	25	17	40.48	-	-	-	A	104203222	T	A	104203222	3	1	724	1	0	0	0	0	1	0	0	0	591	1841	64	5	1051	5	AMY1A	1	104203222	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09		104203222	145047399	1	63601										
ILF2	0	genome.wustl.edu	37	chr1	153636538	153636538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ctagtaggtcaaggatccagGgtgtgaggggctcaaagcca	15	8	2	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	153636538	153636538	G	A	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	missense	c.725	p.P242L	1.000	pfam_DZF,smart_DZF	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	68	0	0	82	24	22.64	-	-	-	A	153636538	G	A	153636538	3	1	724	1	0	0	0	0	1	0	0	0	7765	1232	43	4	467	4	ILF2	1	153636538	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	49433316	153636538	95614083	2	63602										
PLD5	0	genome.wustl.edu	37	chr1	242253225	242253225	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ttggagaggggtttgagtttGaacaggcttgagcagttcgg	17	4	0	4			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	242253225	242253225	G	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.1542	p.F514L	0.994	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	210	0	0	238	33	12.13	-	-	-	T	242253225	G	T	242253225	3	4	724	1	0	0	0	0	1	0	0	0	12123	1281	45	2	72	2	PLD5	1	242253225	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	88616687	242253225	6997396	3	63603										
EIF5B	0	genome.wustl.edu	37	chr2	99988165	99988165	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ggattggatgattgggaagcTatggccagtgatgaggagac	17	4	0	4			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	2	99988165	99988165	T	A	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	silent	c.1524	p.A508	0.990	NULL	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	86	0	0	67	32	32.32	-	-	-	A	99988165	T	A	99988165	2	1	724	1	0	0	0	0	0	0	0	1	5081	1509	53	5		5	EIF5B	2	99988165	Silent	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09		99988165	143211208	4	63604										
SCN11A	0	genome.wustl.edu	37	chr3	38892206	38892206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gatgatgtcaaagatctggcTtgtgactatgtcgaacacga	11	7	2	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	3	38892206	38892206	T	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.4093	p.S1365G	0.006	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	88	0	0	52	62	54.39	-	-	-	C	38892206	T	C	38892206	3	2	724	1	0	0	0	0	1	0	0	0	14001	1609	56	5	1290	5	SCN11A	3	38892206	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09		38892206	159130224	5	63605										
ULK4	0	genome.wustl.edu	37	chr3	41938435	41938435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tctcagtggagtcgatctgcGagcacacttgttgcaaaaag	11	9	2	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	3	41938435	41938435	G	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	missense	c.1409	p.S470L	0.685	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	21	0	0	19	8	29.63	-	-	-	A	41938435	G	A	41938435	3	1	724	1	0	0	0	0	1	0	0	0	17075	1059	37	1	2510	1	ULK4	3	41938435	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	3046229	41938435	156083995	6	63606										
KLHL8	0	genome.wustl.edu	37	chr4	88106441	88106441	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	caaccatttggaatgatgctGaggattggcaagaagccact	11	8	0	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	88106441	88106441	G	A	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	nonsense	c.727	p.Q243*	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	55	0	0	50	36	41.86	-	-	-	A	88106441	G	A	88106441	4	1	724	1	0	0	0	0	0	1	0	0	8448	1299	45	2	1167	2	KLHL8	4	88106441	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		88106441	103047835	7	63607										
SLC7A11	0	genome.wustl.edu	37	chr4	139144461	139144461	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ccagctgacactcatgctatTtaggaccatcactacagctg	7	13	2	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	139144461	139144461	T	G	SNP	SLC7A11	ENST00000280612	human	ensembl	69_37n	-1	known	missense	c.538	p.N180H	1.000	pfam_AA-permease_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012	81	0	0	86	23	21.1	-	-	-	G	139144461	T	G	139144461	3	3	724	1	0	0	0	0	1	0	0	0	14783	1841	64	5	1003	5	SLC7A11	4	139144461	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09	51038020	139144461	52009815	8	63608										
DCHS2	0	genome.wustl.edu	37	chr4	155242117	155242117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ctatggtctgtagtaatcacTctgaaaagataatgagatgt	9	5	3	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	155242117	155242117	T	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.3069	p.R1023S	0.967	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	89	0	0	70	25	26.32	-	-	-	A	155242117	T	A	155242117	3	1	724	1	0	0	0	0	1	0	0	0	4319	1548	54	5	5729	5	DCHS2	4	155242117	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09	16097656	155242117	35912159	9	63609										
TRIM61	0	genome.wustl.edu	37	chr4	165890903	165890903	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tgcctcttcctcttcttgctTcttatctggagttgcttagc	7	12	5	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	165890903	165890903	T	C	SNP	TRIM61	ENST00000329314	human	ensembl	69_37n	-1	known	silent	c.252	p.R84	0.015	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM61	HGNC	ENSG00000183439	58	0	0	63	23	26.74	-	-	-	C	165890903	T	C	165890903	2	2	724	1	0	0	0	0	0	0	0	1	16632	1780	62	5		5	TRIM61	4	165890903	Silent	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09	10648786	165890903	25263373	10	63610										
GRIA1	0	genome.wustl.edu	37	chr5	153026664	153026664	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gccctgaactgcaggatgccCtcatcagcatcattgaccat	8	14	3	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	5	153026664	153026664	C	G	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	1	known	missense	c.427	p.L143V	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	93	0	0	56	26	31.71	-	-	-	G	153026664	C	G	153026664	3	3	724	1	0	0	0	0	1	0	0	0	6818	681	24	4	407	4	GRIA1	5	153026664	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09		153026664	27888596	11	63611										
FAM8A1	0	genome.wustl.edu	37	chr6	17608448	17608448	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ccactatccgagctttgatcAagaatttttcaattgcttct	5	10	3	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	17608448	17608448	A	C	SNP	FAM8A1	ENST00000259963	human	ensembl	69_37n	1	known	missense	c.1120	p.K374Q	1.000	pfam_RDD	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414	146	0	0	186	48	20.51	-	-	-	C	17608448	A	C	17608448	3	2	724	1	0	0	0	0	1	0	0	0	5693	131	5	5	1138	5	FAM8A1	6	17608448	Missense_Mutation	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09		17608448	153506619	12	63612										
KIFC1	0	genome.wustl.edu	37	chr6	33372827	33372827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gtgtattctgccgggtccgcCctgtcctgccgggggagccc	15	15	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	33372827	33372827	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.955	p.P319S	1.000	smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	20	0	0	14	6	30	-	-	-	T	33372827	C	T	33372827	3	4	724	1	0	0	0	0	1	0	0	0	8364	623	22	4	981	4	KIFC1	6	33372827	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	15764379	33372827	137742240	13	63613										
MTCH1	0	genome.wustl.edu	37	chr6	36940433	36940433	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	cttgttccaaccaacctgggAacctggattctggtcgtttc	9	12	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	36940433	36940433	A	C	SNP	MTCH1	ENST00000373627	human	ensembl	69_37n	-1	known	missense	c.901	p.S301A	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409	34	0	0	30	10	25	-	-	-	C	36940433	A	C	36940433	3	2	724	1	0	0	0	0	1	0	0	0	9985	261	9	5		5	MTCH1	6	36940433	Missense_Mutation	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09	3567606	36940433	134174634	14	63614										
KCNK5	0	genome.wustl.edu	37	chr6	39162069	39162069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	atcaccaggtggactaggacGccccacacgatgaagatgac	11	12	1	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	39162069	39162069	G	A	SNP	KCNK5	ENST00000359534	human	ensembl	69_37n	-1	known	silent	c.510	p.G170	0.086	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626	55	0	0	58	15	19.48	-	-	-	A	39162069	G	A	39162069	2	1	724	1	0	0	0	0	0	0	0	1	8123	1074	38	1		1	KCNK5	6	39162069	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	2221636	39162069	131952998	15	63615										
TREML1	0	genome.wustl.edu	37	chr6	41122014	41122014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	caggagcagcagcaagagcaGggtgaggcccatggctgggc	18	10	0	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	41122014	41122014	G	C	SNP	TREML1	ENST00000426005	human	ensembl	69_37n	-1	known	missense	c.13	p.L5V	0.429	NULL	pfam_Ig_V-set	-	no_errors	TREML1	HGNC	ENSG00000161911	30	0	0	51	8	13.56	-	-	-	C	41122014	G	C	41122014	3	2	724	1	0	0	0	0	1	0	0	0	16568	991	35	4	944	4	TREML1	6	41122014	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	1959945	41122014	129993053	16	63616										
MGAM	0	genome.wustl.edu	37	chr7	141794269	141794269	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ctgggagacaacacagccgcGtgggatcagctgaagaagtc	14	10	1	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	7	141794269	141794269	G	A	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.7281	p.A2427	0.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	71	0	0	47	40	45.98	-	-	-	A	141794269	G	A	141794269	2	1	724	1	0	0	0	0	0	0	0	1	9612	1160	40	1		1	MGAM	7	141794269	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		141794269	17344394	17	63617										
WRN	0	genome.wustl.edu	37	chr8	30958371	30958371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ttctttttttacaggtatcaCgctcattgctgtggatgagg	10	7	3	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	8	30958371	30958371	C	T	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	missense	c.1988	p.T663M	0.849	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	107	0	0	19	27	58.7	-	-	-	T	30958371	C	T	30958371	3	4	724	1	0	0	0	0	1	0	0	0	17499	536	19	1	2054	1	WRN	8	30958371	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09		30958371	115405651	18	63618										
DOCK8	0	genome.wustl.edu	37	chr9	420960	420960	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	cttgtccagggaaaacagagTtctgacaaagtcagtaccca	9	10	2	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	420960	420960	T	A	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	missense	c.4035	p.S1345R	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	20	0	0	15	11	42.31	-	-	-	A	420960	T	A	420960	3	1	724	1	0	0	0	0	1	0	0	0	4728	1722	60	5	4161	5	DOCK8	9	420960	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09		420960	140792471	19	63619										
ERMP1	0	genome.wustl.edu	37	chr9	5830922	5830922	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	atgaaggctgttgctttgcaCttcaatcagtttaatctgtt	8	7	3	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	5830922	5830922	C	G	SNP	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	missense	c.445	p.V149L	0.012	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	97	0	0	59	33	35.87	-	-	-	G	5830922	C	G	5830922	3	3	724	1	0	0	0	0	1	0	0	0	5273	565	20	4	2325	4	ERMP1	9	5830922	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	5409962	5830922	135382509	20	63620										
NPR2	0	genome.wustl.edu	37	chr9	35794041	35794041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gccccacacgtgctacaggcCggccctggcaggacaatcgc	12	17	0	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	35794041	35794041	C	T	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.814	p.R272W	0.999	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	52	0	0	14	38	73.08	-	-	-	T	35794041	C	T	35794041	3	4	724	1	0	0	0	0	1	0	0	0	10668	643	23	1	820	1	NPR2	9	35794041	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	29963119	35794041	105419390	21	63621										
AGTPBP1	0	genome.wustl.edu	37	chr9	88204545	88204545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ttcacataacacatctttccGaaaatagatttgctgaggat	6	8	2	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	88204545	88204545	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.2656	p.R886W	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	93	0	0	71	28	28.28	-	-	-	A	88204545	G	A	88204545	3	1	724	1	0	0	0	0	1	0	0	0	400	1057	37	1	1088	1	AGTPBP1	9	88204545	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	52410504	88204545	53008886	22	63622										
RAB14	0	genome.wustl.edu	37	chr9	123943767	123943767	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tgttgtacaccagactcagcAgcattcagatccaagcttcc	7	13	2	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	123943767	123943767	A	G	SNP	RAB14	ENST00000373840	human	ensembl	69_37n	-1	known	silent	c.555	p.A185	0.945	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396	46	0	0	14	44	75.86	-	-	-	G	123943767	A	G	123943767	2	3	724	1	0	0	0	0	0	0	0	1	12983	175	7	5		5	RAB14	9	123943767	Silent	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09	35739222	123943767	17269664	23	63623										
FBXO18	0	genome.wustl.edu	37	chr10	5951018	5951018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gtgtgtgctgaacctcatacGgtgagctttgcctgtgctgt	13	9	1	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	5951018	5951018	G	A	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	missense	c.1037	p.R346Q	1.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	74	0	0	58	11	15.94	-	-	-	A	5951018	G	A	5951018	3	1	724	1	0	0	0	0	1	0	0	0	5777	1130	39	1	1060	1	FBXO18	10	5951018	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		5951018	129583729	24	63624										
CUBN	0	genome.wustl.edu	37	chr10	16945996	16945996	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tactttgcatggaatccaatGtgttctacacgttcgttggt	9	8	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	16945996	16945996	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.8031	p.H2677	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	38	0	0	34	10	22.73	-	-	-	A	16945996	G	A	16945996	2	1	724	1	0	0	0	0	0	0	0	1	4082	1368	48	4		4	CUBN	10	16945996	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	10994978	16945996	118588751	25	63625										
APBB1IP	0	genome.wustl.edu	37	chr10	26825123	26825123	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tacgggcttctggaatttatTatgtacccaaaggaaagact	9	7	1	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	26825123	26825123	T	A	SNP	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	missense	c.1021	p.Y341N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	26	0	0	34	11	24.44	-	-	-	A	26825123	T	A	26825123	3	1	724	1	0	0	0	0	1	0	0	0	761	1754	61	5	1051	5	APBB1IP	10	26825123	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09	9879127	26825123	108709624	26	63626										
LIPN	0	genome.wustl.edu	37	chr10	90524285	90524285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gatgcaggttatgatgtatgGatgggaaacagtcggggaaa	16	3	0	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	90524285	90524285	G	T	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.345	p.W115C	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	87	0	0	50	48	48.98	-	-	-	T	90524285	G	T	90524285	3	4	724	1	0	0	0	0	1	0	0	0	8884	1183	41	2	355	2	LIPN	10	90524285	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	63699162	90524285	45010462	27	63627										
DPCD	0	genome.wustl.edu	37	chr10	103360972	103360972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ttctgcagcctatcttcatgCgcaaggacaccaagatgagt	9	11	3	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	103360972	103360972	C	T	SNP	DPCD	ENST00000370151	human	ensembl	69_37n	1	known	missense	c.283	p.R95C	1.000	NULL	NULL	-	no_errors	DPCD	HGNC	ENSG00000166171	56	0	0	23	33	58.93	-	-	-	T	103360972	C	T	103360972	3	4	724	1	0	0	0	0	1	0	0	0	4746	768	27	1	297	1	DPCD	10	103360972	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	12836687	103360972	32173775	28	63628										
OR56A4	0	genome.wustl.edu	37	chr11	6024337	6024337	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tgtgggtttccactgaggccCtgtatctgtcccaataaagt	10	10	1	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	6024337	6024337	C	T	SNP	OR56A4	ENST00000330728	human	ensembl	69_37n	-1	known	silent	c.42	p.Q14	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389	78	0	0	75	21	21.88	-	-	-	T	6024337	C	T	6024337	2	4	724	1	0	0	0	0	0	0	0	1	11208	680	24	4		4	OR56A4	11	6024337	Silent	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09		6024337	128982179	29	63629										
NRXN2	0	genome.wustl.edu	37	chr11	64416348	64416348	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ttgggcaggttgctgaacatAttcttgctcagaccgccaat	10	10	2	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	64416348	64416348	A	G	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	silent	c.3141	p.N1047	0.891	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	24	0	0	22	13	37.14	-	-	-	G	64416348	A	G	64416348	2	3	724	1	0	0	0	0	0	0	0	1	10739	446	16	5		5	NRXN2	11	64416348	Silent	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09	58392011	64416348	70590168	30	63630										
FUT4	0	genome.wustl.edu	37	chr11	94278445	94278445	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	caactgagccaacatgtgacCgtggacgtgttcggccgggg	15	11	0	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	94278445	94278445	C	T	SNP	FUT4	ENST00000358752	human	ensembl	69_37n	1	known	silent	c.1146	p.T382	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT4	HGNC	ENSG00000196371	9	0	0	20	5	20	-	-	-	T	94278445	C	T	94278445	2	4	724	1	0	0	0	0	0	0	0	1	6155	639	23	1		1	FUT4	11	94278445	Silent	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	29862097	94278445	40728071	31	63631										
CACNA1C	0	genome.wustl.edu	37	chr12	2795355	2795355	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gaagggcctccttccacctgGaatgtctgaagcgacagaag	12	11	1	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	2795355	2795355	G	C	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.5917	p.E1973Q	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	58	0	0	25	26	50.98	-	-	-	C	2795355	G	C	2795355	3	2	724	1	0	0	0	0	1	0	0	0	2565	1175	41	2	6591	2	CACNA1C	12	2795355	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		2795355	131056540	32	63632										
DUSP16	0	genome.wustl.edu	37	chr12	12640024	12640024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	cacaaaagctgtcattcacaGgcacacgcaggaaatgagac	9	11	2	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	12640024	12640024	G	A	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	missense	c.629	p.P210L	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	71	0	0	69	18	20.69	-	-	-	A	12640024	G	A	12640024	3	1	724	1	0	0	0	0	1	0	0	0	4851	1000	35	4	1380	4	DUSP16	12	12640024	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	9844669	12640024	121211871	33	63633										
PTPRB	0	genome.wustl.edu	37	chr12	70974895	70974895	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	accacggagtacaggctgccGgacttgagagagtggaagct	15	9	0	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	70974895	70974895	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.2499	p.S833	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	77	0	0	42	49	53.85	-	-	-	A	70974895	G	A	70974895	2	1	724	1	0	0	0	0	0	0	0	1	12879	1103	39	1		1	PTPRB	12	70974895	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	58334871	70974895	62877000	34	63634										
SRRM4	0	genome.wustl.edu	37	chr12	119591417	119591417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ccagcagaagctctaggtccCgccgcagccctagctactcc	9	18	1	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	119591417	119591417	C	T	SNP	SRRM4	ENST00000267260	human	ensembl	69_37n	1	known	missense	c.1354	p.R452C	0.987	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	29	0	0	9	7	43.75	-	-	-	T	119591417	C	T	119591417	3	4	724	1	0	0	0	0	1	0	0	0	15262	652	23	1	1396	1	SRRM4	12	119591417	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	48616522	119591417	14260478	35	63635										
VPS33A	0	genome.wustl.edu	37	chr12	122720362	122720362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	aacatcatccatccagaggcGtaatgttttccgtatagttg	8	9	1	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	122720362	122720362	G	A	SNP	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	missense	c.1411	p.R471C	0.998	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	96	0	0	101	32	24.06	-	-	-	A	122720362	G	A	122720362	3	1	724	1	0	0	0	0	1	0	0	0	17298	1145	40	1	391	1	VPS33A	12	122720362	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	3128945	122720362	11131533	36	63636										
SPRY2	0	genome.wustl.edu	37	chr13	80910967	80910967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tgtgtttgagtttttacagcGgcaaccaggcctgttaaccc	10	10	0	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	13	80910967	80910967	G	A	SNP	SPRY2	ENST00000377102	human	ensembl	69_37n	-1	known	missense	c.874	p.R292C	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY2	HGNC	ENSG00000136158	52	0	0	10	15	60	-	-	-	A	80910967	G	A	80910967	3	1	724	1	0	0	0	0	1	0	0	0	15197	1116	39	1	77	1	SPRY2	13	80910967	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		80910967	34258911	37	63637										
KIAA1737	0	genome.wustl.edu	37	chr14	77580648	77580648	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	cctagaagcattctctgatcAcccagccatatagcacagag	7	13	2	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	14	77580648	77580648	A	C	SNP	KIAA1737	ENST00000361786	human	ensembl	69_37n	1	known	missense	c.1187	p.H396P	0.497	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894	18	0	0	13	7	35	-	-	-	C	77580648	A	C	77580648	3	2	724	1	0	0	0	0	1	0	0	0	8307	159	6	5	1197	5	KIAA1737	14	77580648	Missense_Mutation	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09		77580648	29768892	38	63638										
CKB	0	genome.wustl.edu	37	chr14	103988690	103988690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tccagcgtgaagccgctcggCgtgctcttggcgcgcagctc	14	15	1	1			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	14	103988690	103988690	C	T	SNP	CKB	ENST00000348956	human	ensembl	69_37n	-1	known	silent	c.141	p.T47	0.990	pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKB	HGNC	ENSG00000166165	22	0	0	11	9	45	-	-	-	T	103988690	C	T	103988690	2	4	724	1	0	0	0	0	0	0	0	1	3476	755	27	1		1	CKB	14	103988690	Silent	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09	26408042	103988690	3360850	39	63639										
THBS1	0	genome.wustl.edu	37	chr15	39874617	39874619	+	In_Frame_Del	DEL	GAA	GAA	-													0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ctggcatccctgaggcagatGaagaagacccggggcacgct							TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	15	39874617	39874619	GAA	-	DEL	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	in_frame_del	c.291_293	p.K99in_frame_del	1.000:1.000:1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	47	0	0	34	11	24.44	-	-	-	-	39874619	GAA	-	39874617	7	5	724	1	0	1	0	1	0	0	0	0	15948	1290	45	0	297	0	THBS1	15	39874617	In_Frame_Del	DEL	GAA	TCGA-D8-A1Y3-01A-11D-A159-09		39874617	62656775	40	63640										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	141	0	0	28	32	53.33	-	-	-	A	7578212	G	A	7578212	4	1	724	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		7578212	73616998	41	63641										
USP32	0	genome.wustl.edu	37	chr17	58275761	58275761	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	aatggcattccaaagaggctGgggcgattcttctgagatga	13	7	2	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	58275761	58275761	G	A	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	silent	c.3294	p.P1098	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	150	0	0	79	88	52.69	-	-	-	A	58275761	G	A	58275761	2	1	724	1	0	0	0	0	0	0	0	1	17160	1335	47	4		4	USP32	17	58275761	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	50697549	58275761	22919449	42	63642										
PPM1D	0	genome.wustl.edu	37	chr17	58725291	58725291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	atttcttcagtggtgaatttGtggtgtcacctgaaccagac	10	8	3	3			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	58725291	58725291	G	A	SNP	PPM1D	ENST00000305921	human	ensembl	69_37n	1	known	missense	c.865	p.V289M	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1D	HGNC	ENSG00000170836	83	0	0	111	29	20.71	-	-	-	A	58725291	G	A	58725291	3	1	724	1	0	0	0	0	1	0	0	0	12414	1377	48	4	879	4	PPM1D	17	58725291	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	449530	58725291	22469919	43	63643										
ZNF414	0	genome.wustl.edu	37	chr19	8577364	8577364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tgcagctcagggctgagcagCggaagagcttgcctggtagg	17	9	1	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	8577364	8577364	C	T	SNP	ZNF414	ENST00000393927	human	ensembl	69_37n	-1	known	missense	c.437	p.R146H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF414	HGNC	ENSG00000133250	69	0	0	56	55	48.25	-	-	-	T	8577364	C	T	8577364	3	4	724	1	0	0	0	0	1	0	0	0	17987	768	27	1	769	1	ZNF414	19	8577364	Missense_Mutation	SNP	C	TCGA-D8-A1Y3-01A-11D-A159-09		8577364	50551619	44	63644										
ATP13A1	0	genome.wustl.edu	37	chr19	19766896	19766896	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ggtggctttctgtggggggaTgtgctgcaccaccttggtgc	17	9	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	19766896	19766896	T	C	SNP	ATP13A1	ENST00000357324	human	ensembl	69_37n	-1	known	missense	c.1180	p.I394V	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A1	HGNC	ENSG00000105726	24	0	0	26	10	27.78	-	-	-	C	19766896	T	C	19766896	3	2	724	1	0	0	0	0	1	0	0	0	1127	1464	51	5	2510	5	ATP13A1	19	19766896	Missense_Mutation	SNP	T	TCGA-D8-A1Y3-01A-11D-A159-09	11189532	19766896	39362087	45	63645										
ZNF90	0	genome.wustl.edu	37	chr19	20228629	20228629	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	ccaagacctttgtccagagcAgagcctaaaagattccttcc	7	13	0	4			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	20228629	20228629	A	G	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	1	known	missense	c.266	p.Q89R	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	87	0	0	104	22	17.46	-	-	-	G	20228629	A	G	20228629	3	3	724	1	0	0	0	0	1	0	0	0	18292	188	7	5	280	5	ZNF90	19	20228629	Missense_Mutation	SNP	A	TCGA-D8-A1Y3-01A-11D-A159-09	461733	20228629	38900354	46	63646										
SIRT2	0	genome.wustl.edu	37	chr19	39369929	39369929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	tatgctggcgtgctccctccGgacaaggtcctccagctcct	10	16	0	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	39369929	39369929	G	A	SNP	SIRT2	ENST00000249396	human	ensembl	69_37n	-1	known	missense	c.1036	p.R346W	0.998	pirsf_NAD-dep_deAcase_SIR2_euk	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT2	HGNC	ENSG00000068903	41	0	0	19	9	32.14	-	-	-	A	39369929	G	A	39369929	3	1	724	1	0	0	0	0	1	0	0	0	14427	1115	39	1	137	1	SIRT2	19	39369929	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09	19141300	39369929	19759054	47	63647										
TAF4	0	genome.wustl.edu	37	chr20	60578311	60578311	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	gctttggttccaggtaacacGgcgggtttcaccacagggac	13	11	1	0			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	20	60578311	60578311	G	C	SNP	TAF4	ENST00000252996	human	ensembl	69_37n	-1	known	silent	c.2391	p.A797	0.026	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699	75	0	0	63	23	26.74	-	-	-	C	60578311	G	C	60578311	2	2	724	1	0	0	0	0	0	0	0	1	15618	1103	39	3		3	TAF4	20	60578311	Silent	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		60578311	2447209	48	63648										
C2CD2	0	genome.wustl.edu	37	chr21	43338233	43338233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0204081632653061	1	1	0.227611098578841	0	0.271382463690156	1	1	0	cctgagcttcctttacagtcGtgggcttggtaatcagaacc	10	11	1	2			TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	21	43338233	43338233	G	A	SNP	C2CD2	ENST00000380486	human	ensembl	69_37n	-1	known	missense	c.701	p.T234M	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2	HGNC	ENSG00000157617	32	0	0	34	16	32	-	-	-	A	43338233	G	A	43338233	3	1	724	1	0	0	0	0	1	0	0	0	2172	1145	40	1	1429	1	C2CD2	21	43338233	Missense_Mutation	SNP	G	TCGA-D8-A1Y3-01A-11D-A159-09		43338233	4791662	49	63649										
COL6A6	0	genome.wustl.edu	37	chr3	130383928	130383928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agatccaaagcagcccccacGaccattccgaaggtactgtc	8	15	0	1			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	3	130383928	130383928	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.6584	p.R2195Q	0.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	62	0	0	45	19	29.69	-	-	-	A	130383928	G	A	130383928	3	1	725	1	0	0	0	0	1	0	0	0	3733	1058	37	1	6722	1	COL6A6	3	130383928	Missense_Mutation	SNP	G	TCGA-D8-A27E-01A-11D-A16D-09		130383928	67638502	1	63650										
OTUD4	0	genome.wustl.edu	37	chr4	146058902	146058902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgctatcaacagagttggCcccagggctgaccacatcag	10	13	3	2			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	4	146058902	146058902	C	T	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	missense	c.3025	p.A1009T	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	114	0	0	62	30	32.61	-	-	-	T	146058902	C	T	146058902	3	4	725	1	0	0	0	0	1	0	0	0	11387	739	26	4	323	4	OTUD4	4	146058902	Missense_Mutation	SNP	C	TCGA-D8-A27E-01A-11D-A16D-09		146058902	45095374	2	63651										
MAPK14	0	genome.wustl.edu	37	chr6	36041850	36041850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taaaacctagtaatctagctGtgaatgaagactgtgagctg	10	6	1	4			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	6	36041850	36041850	G	A	SNP	MAPK14	ENST00000229794	human	ensembl	69_37n	1	known	missense	c.472	p.V158M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_p38	-	no_errors	MAPK14	HGNC	ENSG00000112062	75	0	0	62	19	23.46	-	-	-	A	36041850	G	A	36041850	3	1	725	1	0	0	0	0	1	0	0	0	9347	1377	48	4	494	4	MAPK14	6	36041850	Missense_Mutation	SNP	G	TCGA-D8-A27E-01A-11D-A16D-09		36041850	135073217	3	63652										
ASZ1	0	genome.wustl.edu	37	chr7	117022190	117022190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttccagatctccaaatgctGtatatgaactgtatacattt	5	9	1	2			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	7	117022190	117022190	G	C	SNP	ASZ1	ENST00000284629	human	ensembl	69_37n	-1	known	missense	c.821	p.T274R	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ASZ1	HGNC	ENSG00000154438	81	0	0	57	21	26.92	-	-	-	C	117022190	G	C	117022190	3	2	725	1	0	0	0	0	1	0	0	0	1073	1377	48	4	630	4	ASZ1	7	117022190	Missense_Mutation	SNP	G	TCGA-D8-A27E-01A-11D-A16D-09		117022190	42116473	4	63653										
CDK10	0	genome.wustl.edu	37	chr16	89762012	89762012	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctccctgcagcctgtgagcCggagctcatgccgacctttc	10	16	2	1			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	16	89762012	89762012	C	A	SNP	CDK10	ENST00000353379	human	ensembl	69_37n	1	known	missense	c.995	p.P332Q	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK10	HGNC	ENSG00000185324	19	0	0	28	6	17.65	-	-	-	A	89762012	C	A	89762012	3	1	725	1	0	0	0	0	1	0	0	0	3154	652	23	3	1045	3	CDK10	16	89762012	Missense_Mutation	SNP	C	TCGA-D8-A27E-01A-11D-A16D-09		89762012	592741	5	63654										
MYO5B	0	genome.wustl.edu	37	chr18	47480795	47480795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagcccagttctggtcagttCctttggggacctgcagaacc	12	12	2	1			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	18	47480795	47480795	C	A	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.1556	p.G519V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	72	0	0	64	24	27.27	-	-	-	A	47480795	C	A	47480795	3	1	725	1	0	0	0	0	1	0	0	0	10151	855	30	2	4102	2	MYO5B	18	47480795	Missense_Mutation	SNP	C	TCGA-D8-A27E-01A-11D-A16D-09		47480795	30596453	6	63655										
CEACAM19	0	genome.wustl.edu	37	chr19	45175930	45175930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctctacatccagaagattCcagagcagcctcaaaagaac	6	13	2	4			TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	19	45175930	45175930	C	G	SNP	CEACAM19	ENST00000403660	human	ensembl	69_37n	1	known	missense	c.118	p.P40A	1.000	NULL	pfam_Ig_V-set	-	no_errors	CEACAM19	HGNC	ENSG00000186567	22	0	0	15	15	50	-	-	-	G	45175930	C	G	45175930	3	3	725	1	0	0	0	0	1	0	0	0	3219	855	30	2	124	2	CEACAM19	19	45175930	Missense_Mutation	SNP	C	TCGA-D8-A27E-01A-11D-A16D-09		45175930	13953053	7	63656										
PIK3CD	0	genome.wustl.edu	37	chr1	9777639	9777639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ctggagcagccgttccgcatCgagctcatccagggcagcaa	12	14	1	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	9777639	9777639	C	G	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	missense	c.870	p.I290M	0.008	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	43	0	0	12	38	76	-	-	-	G	9777639	C	G	9777639	3	3	726	1	0	0	0	0	1	0	0	0	11989	874	31	3	997	3	PIK3CD	1	9777639	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		9777639	239472982	1	63657										
CSMD2	0	genome.wustl.edu	37	chr1	33988932	33988932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	catctaaagcccagtgatcaTctttgaacttattcataaag	5	9	4	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	33988932	33988932	T	C	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.10484	p.D3495G	0.982	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	87	0	0	82	52	38.81	-	-	-	C	33988932	T	C	33988932	3	2	726	1	0	0	0	0	1	0	0	0	3977	1435	50	5	427	5	CSMD2	1	33988932	Missense_Mutation	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09	24211293	33988932	215261689	2	63658										
HSD3B1	0	genome.wustl.edu	37	chr1	120054136	120054136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gttcacacagaactccagaaCaagaccaagctgacagtgct	8	12	1	4			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	120054136	120054136	C	A	SNP	HSD3B1	ENST00000235547	human	ensembl	69_37n	1	known	missense	c.162	p.N54K	0.311	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857	39	0	0	45	37	45.12	-	-	-	A	120054136	C	A	120054136	3	1	726	1	0	0	0	0	1	0	0	0	7441	477	17	4	162	4	HSD3B1	1	120054136	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	86065204	120054136	129196485	3	63659										
FLG2	0	genome.wustl.edu	37	chr1	152327278	152327278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gttggccataattagactgaCttgatctagactcatgctgt	9	8	2	4			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	152327278	152327278	C	T	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.2984	p.S995N	0.780	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	146	0	0	136	33	19.53	-	-	-	T	152327278	C	T	152327278	3	4	726	1	0	0	0	0	1	0	0	0	5969	565	20	4	4195	4	FLG2	1	152327278	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	32273142	152327278	96923343	4	63660										
PKLR	0	genome.wustl.edu	37	chr1	155263003	155263003	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	agcacaatgatggcagcagcAcagcacttgaaggcagcctc	11	12	0	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	155263003	155263003	A	C	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.1401	p.C467W	1.000	pfam_Pyrv_Knase_C,superfamily_Pyrv_Knase_C,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	36	0	0	78	23	22.77	-	-	-	C	155263003	A	C	155263003	3	2	726	1	0	0	0	0	1	0	0	0	12050	157	6	5	335	5	PKLR	1	155263003	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	2935725	155263003	93987618	5	63661										
HMCN1	0	genome.wustl.edu	37	chr1	185951458	185951458	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gaaggacagcagcttactttGccctgtactctgttagctgg	11	10	1	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	185951458	185951458	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.2727	p.L909F	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	72	0	0	80	87	52.1	-	-	-	T	185951458	G	T	185951458	3	4	726	1	0	0	0	0	1	0	0	0	7271	1310	46	4	2797	4	HMCN1	1	185951458	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	30688455	185951458	63299163	6	63662										
ITSN2	0	genome.wustl.edu	37	chr2	24494689	24494689	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	cttacgttgtttctcctcagCtttccgttcctcttcttgaa	5	13	4	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	24494689	24494689	C	G	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.2203	p.A735P	0.974	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	248	0	0	161	121	42.91	-	-	-	G	24494689	C	G	24494689	3	3	726	1	0	0	0	0	1	0	0	0	7981	797	28	4	3029	4	ITSN2	2	24494689	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		24494689	218704684	7	63663										
CDKL4	0	genome.wustl.edu	37	chr2	39456599	39456599	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	acagctactacttgtccagaGgttttgtttctgcatttgaa	8	8	1	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	39456599	39456599	G	A	SNP	CDKL4	ENST00000378803	human	ensembl	69_37n	-1	known	silent	c.75	p.T25	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	85	0	0	58	33	35.87	-	-	-	A	39456599	G	A	39456599	2	1	726	1	0	0	0	0	0	0	0	1	3185	987	35	4		4	CDKL4	2	39456599	Silent	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	14961910	39456599	203742774	8	63664										
EPB41L5	0	genome.wustl.edu	37	chr2	120799675	120799675	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gtctgagatttatggattcaGcacaagtagcagtgagtaac	11	6	2	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	120799675	120799675	G	C	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	missense	c.274	p.A92P	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	64	0	0	91	22	19.47	-	-	-	C	120799675	G	C	120799675	3	2	726	1	0	0	0	0	1	0	0	0	5194	971	34	4	280	4	EPB41L5	2	120799675	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	81343076	120799675	122399698	9	63665										
PHOSPHO2	0	genome.wustl.edu	37	chr2	170558059	170558059	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	agtcacctttttaaagaatgAtgatgttgccatgccacgga	9	8	1	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	170558059	170558059	A	G	SNP	PHOSPHO2	ENST00000359744	human	ensembl	69_37n	1	known	missense	c.578	p.D193G	0.136	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO2	HGNC	ENSG00000144362	12	0	0	10	21	67.74	-	-	-	G	170558059	A	G	170558059	3	3	726	1	0	0	0	0	1	0	0	0	11931	333	12	5	580	5	PHOSPHO2	2	170558059	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	49758384	170558059	72641314	10	63666										
ZCWPW2	0	genome.wustl.edu	37	chr3	28557108	28557108	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gatgccttatcaaaggagaaCaggggtatgtgaaagcctgt	13	6	1	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	28557108	28557108	C	A	SNP	ZCWPW2	ENST00000383768	human	ensembl	69_37n	1	known	missense	c.780	p.N260K	0.990	NULL	pfam_Znf_CW,pfam_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559	41	0	0	13	31	70.45	-	-	-	A	28557108	C	A	28557108	3	1	726	1	0	0	0	0	1	0	0	0	17694	477	17	4	802	4	ZCWPW2	3	28557108	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		28557108	169465322	11	63667										
TCTA	0	genome.wustl.edu	37	chr3	49450057	49450057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tacgggaatacagtgaccggGttgtatcaccgtccaggtga	13	9	1	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	49450057	49450057	G	A	SNP	TCTA	ENST00000273590	human	ensembl	69_37n	1	known	silent	c.198	p.G66	1.000	pirsf_T-cell_leukemia_transloc-assoc	pirsf_T-cell_leukemia_transloc-assoc	-	no_errors	TCTA	HGNC	ENSG00000145022	41	0	0	22	37	62.71	-	-	-	A	49450057	G	A	49450057	2	1	726	1	0	0	0	0	0	0	0	1	15811	1248	44	4		4	TCTA	3	49450057	Silent	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	20892949	49450057	148572373	12	63668										
ZNF80	0	genome.wustl.edu	37	chr3	113955515	113955515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tgaaggtctttccacactcgCtgcactcatagggcttctct	8	13	3	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	113955515	113955515	C	T	SNP	ZNF80	ENST00000308095	human	ensembl	69_37n	-1	known	missense	c.407	p.S136N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF80	HGNC	ENSG00000174255	37	0	0	43	34	44.16	-	-	-	T	113955515	C	T	113955515	3	4	726	1	0	0	0	0	1	0	0	0	18261	797	28	4	418	4	ZNF80	3	113955515	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	64505458	113955515	84066915	13	63669										
ADPRH	0	genome.wustl.edu	37	chr3	119301156	119301156	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gggcggcttggatgccctagAcgtgggaaggtggagagtta	19	6	0	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	119301156	119301156	A	T	SNP	ADPRH	ENST00000357003	human	ensembl	69_37n	1	known	missense	c.140	p.D47V	0.079	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843	38	0	0	70	31	30.69	-	-	-	T	119301156	A	T	119301156	3	4	726	1	0	0	0	0	1	0	0	0	331	275	10	5	142	5	ADPRH	3	119301156	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	5345641	119301156	78721274	14	63670										
ADCY5	0	genome.wustl.edu	37	chr3	123166299	123166302	+	Frame_Shift_Del	DEL	GCGA	GCGA	-													0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	cctgggcgttggtgcgcaggGcgatggccaggtggagggcg							TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	GCGA	GCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	123166299	123166302	GCGA	-	DEL	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	frame_shift_del	c.1094_1091	p.I364fs	1.000:1.000:0.999:1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	17	0	0	17	7	28	-	-	-	-	123166302	GCGA	-	123166299	7	5	726	1	0	1	0	1	0	0	0	0	297	1203	42	0	2775	0	ADCY5	3	123166299	Frame_Shift_Del	DEL	GCGA	TCGA-D8-A27F-01A-11D-A16D-09	3865143	123166299	74856131	15	63671										
HPS3	0	genome.wustl.edu	37	chr3	148880113	148880113	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	aattgaagaagcagattcctTttttaaggtttgtcactttg	8	5	1	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	148880113	148880113	T	A	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	missense	c.2285	p.F762Y	0.994	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	47	0	0	66	41	38.32	-	-	-	A	148880113	T	A	148880113	3	1	726	1	0	0	0	0	1	0	0	0	7391	1841	64	5	2331	5	HPS3	3	148880113	Missense_Mutation	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09	25713814	148880113	49142317	16	63672										
IGSF10	0	genome.wustl.edu	37	chr3	151162894	151162894	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gaagttgttgcttcttgaacTggtttcttatcaaagtcact	8	7	4	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	151162894	151162894	T	A	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.4875	p.P1625	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	150	0	0	141	82	36.61	-	-	-	A	151162894	T	A	151162894	2	1	726	1	0	0	0	0	0	0	0	1	7651	1567	55	5		5	IGSF10	3	151162894	Silent	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09	2282781	151162894	46859536	17	63673										
ABCC5	0	genome.wustl.edu	37	chr3	183665225	183665225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gatgctgatgaggtccagccGcacagccagccaccgcatcg	12	15	0	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	183665225	183665225	G	A	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.3301	p.R1101W	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	26	0	0	47	26	35.62	-	-	-	A	183665225	G	A	183665225	3	1	726	1	0	0	0	0	1	0	0	0	56	1086	38	1	1044	1	ABCC5	3	183665225	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	32502331	183665225	14357205	18	63674										
ANKH	0	genome.wustl.edu	37	chr5	14871377	14871377	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ggataaagagggactcggagCaggtgactcccctccgcccc	13	14	0	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	14871377	14871377	C	T	SNP	ANKH	ENST00000505140	human	ensembl	69_37n	-1	known	silent	c.180	p.L60	0.988	NULL	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122	10	0	0	12	8	38.1	-	-	-	T	14871377	C	T	14871377	2	4	726	1	0	0	0	0	0	0	0	1	627	725	25	4		4	ANKH	5	14871377	Silent	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		14871377	166043883	19	63675										
SEPP1	0	genome.wustl.edu	37	chr5	42800932	42800932	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tcaggcagctggaggcaaacGtcactgacaagattcagtta	11	9	3	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	42800932	42800932	G	C	SNP	SEPP1	ENST00000506577	human	ensembl	69_37n	-1	known	missense	c.1036	p.R346G	1.000	pfam_SelP_C	pfam_Selenoprotein-P_N,pfam_SelP_C	-	pseudogene	SEPP1	HGNC	ENSG00000250722	55	0	0	63	44	41.12	-	-	-	C	42800932	G	C	42800932	3	2	726	1	0	0	0	0	1	0	0	0	14145	1145	40	3	113	3	SEPP1	5	42800932	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	27929555	42800932	138114328	20	63676										
SLC34A1	0	genome.wustl.edu	37	chr5	176813238	176813238	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ccagagtccaggctggtcccCaagctgcgccaggctggcgc	14	16	0	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	176813238	176813238	C	G	SNP	SLC34A1	ENST00000324417	human	ensembl	69_37n	1	known	silent	c.276	p.P92	0.022	NULL	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183	43	0	0	16	27	62.79	-	-	-	G	176813238	C	G	176813238	2	3	726	1	0	0	0	0	0	0	0	1	14656	581	21	4		4	SLC34A1	5	176813238	Silent	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	134012306	176813238	4102022	21	63677										
C6orf89	0	genome.wustl.edu	37	chr6	36884276	36884276	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	agctttttcctgttttcactCacctgccatttccaaaagat	4	12	2	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	36884276	36884276	C	G	SNP	C6orf89	ENST00000355190	human	ensembl	69_37n	1	known	missense	c.772	p.H258D	0.007	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	61	0	0	99	49	33.11	-	-	-	G	36884276	C	G	36884276	3	3	726	1	0	0	0	0	1	0	0	0	2395	826	29	2	794	2	C6orf89	6	36884276	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		36884276	134230791	22	63678										
APOBEC2	0	genome.wustl.edu	37	chr6	41029494	41029494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	agccccaggacttcgaatatGtctggcagaattttgtggag	12	8	1	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	41029494	41029494	G	A	SNP	APOBEC2	ENST00000244669	human	ensembl	69_37n	1	known	missense	c.559	p.V187I	0.278	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC2	HGNC	ENSG00000124701	12	0	0	41	20	32.79	-	-	-	A	41029494	G	A	41029494	3	1	726	1	0	0	0	0	1	0	0	0	790	1377	48	4	565	4	APOBEC2	6	41029494	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	4145218	41029494	130085573	23	63679										
EGFR	0	genome.wustl.edu	37	chr7	55268034	55268034	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	atgatagacgcagatagtcgCccaaagttccgtgagttgat	11	8	0	5			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	55268034	55268034	C	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	1	known	silent	c.2874	p.R958	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	73	0	0	135	47	25.82	-	-	-	A	55268034	C	A	55268034	2	1	726	1	0	0	0	0	0	0	0	1	5002	726	26	4		4	EGFR	7	55268034	Silent	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		55268034	103870629	24	63680										
RELN	0	genome.wustl.edu	37	chr7	103183246	103183246	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tcttcattgaaaaagaggttGtttccactagaaaggattcc	8	7	2	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	103183246	103183246	G	C	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.6603	p.N2201K	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	53	0	0	40	23	36.51	-	-	-	C	103183246	G	C	103183246	3	2	726	1	0	0	0	0	1	0	0	0	13303	1368	48	4	3871	4	RELN	7	103183246	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	47915212	103183246	55955417	25	63681										
ANK1	0	genome.wustl.edu	37	chr8	41575713	41575713	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gcaggcgatgtgtaagggggTaaagccattctgcagcccac	14	10	1	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	41575713	41575713	T	C	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.1117	p.T373A	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	31	0	0	39	23	35.94	-	-	-	C	41575713	T	C	41575713	3	2	726	1	0	0	0	0	1	0	0	0	620	1638	57	5	5010	5	ANK1	8	41575713	Missense_Mutation	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09		41575713	104788309	26	63682										
UBXN2B	0	genome.wustl.edu	37	chr8	59352284	59352284	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tcaagaatacataaaacctaGattgaggttcaaggctttta	7	6	2	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	59352284	59352284	G	C	SNP	UBXN2B	ENST00000399598	human	ensembl	69_37n	1	known	missense	c.626	p.R209T	0.696	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2B	HGNC	ENSG00000215114	67	0	0	58	42	41.58	-	-	-	C	59352284	G	C	59352284	3	2	726	1	0	0	0	0	1	0	0	0	17012	942	33	2	648	2	UBXN2B	8	59352284	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	17776571	59352284	87011738	27	63683										
MYBL1	0	genome.wustl.edu	37	chr8	67488508	67488508	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ttggcattccatggctccttCattgtgctgaattctcatta	7	10	2	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	67488508	67488508	C	A	SNP	MYBL1	ENST00000522677	human	ensembl	69_37n	-1	known	nonsense	c.1204	p.E402*	1.000	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697	67	0	0	81	57	41.01	-	-	-	A	67488508	C	A	67488508	4	1	726	1	0	0	0	0	0	1	0	0	10081	835	29	2	1082	2	MYBL1	8	67488508	Nonsense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	8136224	67488508	78875514	28	63684										
GDAP1	0	genome.wustl.edu	37	chr8	75276444	75276444	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	taatctctgcagtgctgccaAcagcattccgggtggccaag	11	12	1	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	75276444	75276444	A	G	SNP	GDAP1	ENST00000220822	human	ensembl	69_37n	1	known	missense	c.919	p.T307A	1.000	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381	44	0	0	61	41	40.2	-	-	-	G	75276444	A	G	75276444	3	3	726	1	0	0	0	0	1	0	0	0	6358	43	2	5	941	5	GDAP1	8	75276444	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	7787936	75276444	71087578	29	63685										
ZFHX4	0	genome.wustl.edu	37	chr8	77764960	77764960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ggcagaaggtacagaagaagGgcaaaagtggtgaaggcgaa	17	4	0	4			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	77764960	77764960	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.5803	p.G1935S	0.994	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	17	0	0	15	14	48.28	-	-	-	A	77764960	G	A	77764960	3	1	726	1	0	0	0	0	1	0	0	0	17731	1232	43	4	5837	4	ZFHX4	8	77764960	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09	2488516	77764960	68599062	30	63686										
CSMD3	0	genome.wustl.edu	37	chr8	114326893	114326893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	atgactgaaaaacaatttgtAttctatttcgttcttctgct	5	7	3	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	114326893	114326893	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.308	p.I103T	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	72	0	0	109	35	24.31	-	-	-	G	114326893	A	G	114326893	3	3	726	1	0	0	0	0	1	0	0	0	3978	449	16	5	11095	5	CSMD3	8	114326893	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	36561933	114326893	32037129	31	63687										
RAB14	0	genome.wustl.edu	37	chr9	123943823	123943823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	atagattttcttggcagcctCaaggaaggcatcttctacat	8	9	4	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	9	123943823	123943823	C	G	SNP	RAB14	ENST00000373840	human	ensembl	69_37n	-1	known	missense	c.499	p.E167Q	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396	48	0	0	11	30	73.17	-	-	-	G	123943823	C	G	123943823	3	3	726	1	0	0	0	0	1	0	0	0	12983	835	29	2	152	2	RAB14	9	123943823	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		123943823	17269608	32	63688										
CARD9	0	genome.wustl.edu	37	chr9	139265150	139265150	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gaggctgtgcttgagctggtCaatctgcagaaggtccagtg	15	8	2	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	9	139265150	139265150	C	T	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	missense	c.631	p.D211N	0.992	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	18	0	0	7	10	58.82	-	-	-	T	139265150	C	T	139265150	3	4	726	1	0	0	0	0	1	0	0	0	2677	826	29	2	1068	2	CARD9	9	139265150	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	15321327	139265150	1948281	33	63689										
CD44	0	genome.wustl.edu	37	chr11	35226171	35226171	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	cccaaagaagactcccattcGacaacagggacagctggtaa	9	12	0	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	11	35226171	35226171	G	C	SNP	CD44	ENST00000526553	human	ensembl	69_37n	1	novel	missense	c.226	p.D76H	0.037	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CD44	HGNC	ENSG00000026508	49	0	0	47	25	34.72	-	-	-	C	35226171	G	C	35226171	3	2	726	1	0	0	0	0	1	0	0	0	3046	1045	37	3	1304	3	CD44	11	35226171	Missense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09		35226171	99780345	34	63690										
OR5W2	0	genome.wustl.edu	37	chr11	55681285	55681285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gaagaacttggccggaaataCataaagagcagagttccctg	11	8	0	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	11	55681285	55681285	C	T	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	missense	c.774	p.M258I	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	33	0	0	31	27	46.55	-	-	-	T	55681285	C	T	55681285	3	4	726	1	0	0	0	0	1	0	0	0	11258	478	17	4	160	4	OR5W2	11	55681285	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	20455114	55681285	79325231	35	63691										
MYF6	0	genome.wustl.edu	37	chr12	81101569	81101569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ggaaaatgttactctgcagcCattagaagtggcagaaggct	12	7	1	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	12	81101569	81101569	C	A	SNP	MYF6	ENST00000228641	human	ensembl	69_37n	1	known	missense	c.71	p.P24Q	0.996	pfam_Basic,smart_Basic	pfam_Basic,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF6	HGNC	ENSG00000111046	56	0	0	18	37	67.27	-	-	-	A	81101569	C	A	81101569	3	1	726	1	0	0	0	0	1	0	0	0	10100	594	21	4	73	4	MYF6	12	81101569	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		81101569	52750326	36	63692										
SALL2	0	genome.wustl.edu	37	chr14	22005013	22005013	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	cgcgctgggaccttcgcagtCcgagattaactgttggggtt	14	10	0	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	14	22005013	22005013	C	G	SNP	SALL2	ENST00000327430	human	ensembl	69_37n	-1	known	missense	c.43	p.D15H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	56	0	0	18	17	48.57	-	-	-	G	22005013	C	G	22005013	3	3	726	1	0	0	0	0	1	0	0	0	13897	855	30	2	2988	2	SALL2	14	22005013	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		22005013	85344527	37	63693										
ITGA11	0	genome.wustl.edu	37	chr15	68612682	68612682	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gtgtcgaaggacagcgtgtaTgcggagcagtcctgcgcagg	17	9	0	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	15	68612682	68612682	T	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.2457	p.A819	0.005	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	31	0	0	29	23	44.23	-	-	-	A	68612682	T	A	68612682	2	1	726	1	0	0	0	0	0	0	0	1	7928	1451	51	5		5	ITGA11	15	68612682	Silent	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09		68612682	33918710	38	63694										
SLC9A5	0	genome.wustl.edu	37	chr16	67283105	67283105	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ggccagtctggccaaaatcgGtgagtgcgtgtgtgcgtgcg	17	9	1	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	16	67283105	67283105	G	T	SNP	SLC9A5	ENST00000299798	human	ensembl	69_37n	1	known	splice_site	c.187+1	e1+1	1.000	-	-	-	no_errors	SLC9A5	HGNC	ENSG00000135740	27	0	0	26	12	31.58	-	-	-	T	67283105	G	T	67283105	5	4	726	1	0	0	0	0	0	0	1	0	14806	1275	44	4	190	4	SLC9A5	16	67283105	Splice_Site	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09		67283105	23071648	39	63695										
TP53	0	genome.wustl.edu	37	chr17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-													0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	cggttcatgccgcccatgcaGgaactgttacacatgtagtt							TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	49	0	0	24	61	69.32	-	-	-	-	7577558	G	-	7577558	7	5	726	1	0	1	0	1	0	0	0	0	16477	987	35	0	567	0	TP53	17	7577558	Frame_Shift_Del	DEL	G	TCGA-D8-A27F-01A-11D-A16D-09		7577558	73617652	40	63696										
APPBP2	0	genome.wustl.edu	37	chr17	58525152	58525152	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	agtttaatgagacctcgataAtcatattctagtccactgta	6	8	2	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	17	58525152	58525152	A	T	SNP	APPBP2	ENST00000083182	human	ensembl	69_37n	-1	known	missense	c.1548	p.D516E	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	APPBP2	HGNC	ENSG00000062725	26	0	0	17	17	50	-	-	-	T	58525152	A	T	58525152	3	4	726	1	0	0	0	0	1	0	0	0	818	98	4	5	213	5	APPBP2	17	58525152	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	50947594	58525152	22670058	41	63697										
ZNF407	0	genome.wustl.edu	37	chr18	72775227	72775227	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ctcgtcaaggagaagcccctCagaagcagcaggaggccagc	13	13	2	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	18	72775227	72775227	C	G	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	silent	c.5550	p.L1850	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	16	0	0	6	29	82.86	-	-	-	G	72775227	C	G	72775227	2	3	726	1	0	0	0	0	0	0	0	1	17983	813	29	2		2	ZNF407	18	72775227	Silent	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		72775227	5302021	42	63698										
PLIN4	0	genome.wustl.edu	37	chr19	4513410	4513410	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ggtggtgtccacaccggcctGtacggtccctttggccacat	12	14	0	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	4513410	4513410	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	nonsense	c.520	p.Q174*	0.887	superfamily_Ankyrin_rpt-contain_dom	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	36	0	0	45	55	55	-	-	-	A	4513410	G	A	4513410	4	1	726	1	0	0	0	0	0	1	0	0	12166	1386	48	4	3569	4	PLIN4	19	4513410	Nonsense_Mutation	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09		4513410	54615573	43	63699										
OR2Z1	0	genome.wustl.edu	37	chr19	8841963	8841963	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ctgaagctctcctgtgcagaTacctgtgcctacgagatggc	11	12	1	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	8841963	8841963	T	A	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	missense	c.573	p.D191E	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	56	0	0	137	51	27.13	-	-	-	A	8841963	T	A	8841963	3	1	726	1	0	0	0	0	1	0	0	0	11109	1403	49	5	575	5	OR2Z1	19	8841963	Missense_Mutation	SNP	T	TCGA-D8-A27F-01A-11D-A16D-09	4328553	8841963	50287020	44	63700										
OR2Z1	0	genome.wustl.edu	37	chr19	8842092	8842092	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	atgcgctcagaggaggccagAcacaaggctgtcaccacctg	12	13	2	2			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	8842092	8842092	A	T	SNP	OR2Z1	ENST00000324060	human	ensembl	69_37n	1	known	missense	c.702	p.R234S	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733	50	0	0	96	44	31.21	-	-	-	T	8842092	A	T	8842092	3	4	726	1	0	0	0	0	1	0	0	0	11109	272	10	5	704	5	OR2Z1	19	8842092	Missense_Mutation	SNP	A	TCGA-D8-A27F-01A-11D-A16D-09	129	8842092	50286891	45	63701										
NFIX	0	genome.wustl.edu	37	chr19	13186433	13186433	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tatcccgggacaggccgttcCccagcagctggcagcagcca	12	16	0	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	13186433	13186433	C	G	SNP	NFIX	ENST00000585575	human	ensembl	69_37n	1	known	silent	c.879	p.S293	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIX	HGNC	ENSG00000008441	20	0	0	32	24	42.86	-	-	-	G	13186433	C	G	13186433	2	3	726	1	0	0	0	0	0	0	0	1	10446	610	22	4		4	NFIX	19	13186433	Silent	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	4344341	13186433	45942550	46	63702										
SIGLEC5	0	genome.wustl.edu	37	chr19	52115496	52115496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gcaaatcctcacttgcttgtCttgatctccgagtactccgt	7	13	3	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	52115496	52115496	C	G	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	missense	c.1644	p.K548N	0.010	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	64	0	0	11	25	69.44	-	-	-	G	52115496	C	G	52115496	3	3	726	1	0	0	0	0	1	0	0	0	14400	912	32	2	15	2	SIGLEC5	19	52115496	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	38929063	52115496	7013487	47	63703										
IL11	0	genome.wustl.edu	37	chr19	55880300	55880300	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	tcagcacgaccaggaccaggCggcaaacacctgggggcagg	15	13	1	0			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	55880300	55880300	C	G	SNP	IL11	ENST00000264563	human	ensembl	69_37n	-1	known	missense	c.17	p.R6P	0.997	pfam_Interleukin-11	pfam_Interleukin-11,superfamily_4_helix_cytokine-like_core,prints_Interleukin-11_mammalian,prints_Interleukin-11	-	no_errors	IL11	HGNC	ENSG00000095752	14	0	0	3	10	76.92	-	-	-	G	55880300	C	G	55880300	3	3	726	1	0	0	0	0	1	0	0	0	7676	768	27	3	598	3	IL11	19	55880300	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09	3764804	55880300	3248683	48	63704										
KCNG1	0	genome.wustl.edu	37	chr20	49626537	49626537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	ttgcggtcgaagaagaactcGttgcaggtgacgtcgtagtc	14	8	0	3			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	20	49626537	49626537	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	69_37n	-1	known	silent	c.339	p.N113	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559	20	0	0	8	32	80	-	-	-	A	49626537	G	A	49626537	2	1	726	1	0	0	0	0	0	0	0	1	8081	1136	40	1		1	KCNG1	20	49626537	Silent	SNP	G	TCGA-D8-A27F-01A-11D-A16D-09		49626537	13398983	49	63705										
HUWE1	0	genome.wustl.edu	37	chrX	53581746	53581746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12	6	0.535437381472753	1.45918367346939	2.26984126984127	0.523809523809524	0.102564102564103	0.5224358974359	0	gcagctcctgaggaacctctCccaaagctggtggggttggg	15	11	1	1			TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	X	53581746	53581746	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.8342	p.G2781E	0.392	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	81	0	0	119	61	33.89	-	-	-	T	53581746	C	T	53581746	3	4	726	1	0	0	0	0	1	0	0	0	7515	855	30	2	4878	2	HUWE1	23	53581746	Missense_Mutation	SNP	C	TCGA-D8-A27F-01A-11D-A16D-09		53581746	101688814	50	63706										
CDK11B	0	genome.wustl.edu	37	chr1	1586887	1586887	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtgatctccatgcggtgatCtctcagctccccctcctcaa	7	16	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	1586887	1586887	C	T	SNP	CDK11B	ENST00000407249	human	ensembl	69_37n	-1	known	missense	c.163	p.D55N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11B	HGNC	ENSG00000248333	113	0	0	113	35	23.65	-	-	-	T	1586887	C	T	1586887	3	4	727	1	0	0	0	0	1	0	0	0	3156	928	32	2		2	CDK11B	1	1586887	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		1586887	247663734	1	63707										
CDK11A	0	genome.wustl.edu	37	chr1	1635704	1635704	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcagcaggttggacgtcttGaggtcacggtgcaggatcca	15	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	1635704	1635704	G	T	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	silent	c.1644	p.L548	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	79	0	0	40	26	39.39	-	-	-	T	1635704	G	T	1635704	2	4	727	1	0	0	0	0	0	0	0	1	3155	1277	45	2		2	CDK11A	1	1635704	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	48817	1635704	247614917	2	63708										
CDK11A	0	genome.wustl.edu	37	chr1	1647826	1647826	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgccatttcccttctcttCtgtctttcccattcccggcg	5	17	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	1647826	1647826	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	69_37n	-1	known	silent	c.447	p.Q149	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	294	0	0	203	43	17.41	-	-	-	T	1647826	C	T	1647826	2	4	727	1	0	0	0	0	0	0	0	1	3155	912	32	2		2	CDK11A	1	1647826	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	12122	1647826	247602795	3	63709										
NMNAT1	0	genome.wustl.edu	37	chr1	10041198	10041198	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgaaacacaagattctagtCaaaagaaatccctagagcca	6	10	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	10041198	10041198	C	G	SNP	NMNAT1	ENST00000496751	human	ensembl	69_37n	1	putative	nonsense	c.89	p.S30*	0.215	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NMNAT1	HGNC	ENSG00000173614	57	0	0	43	9	17.31	-	-	-	G	10041198	C	G	10041198	4	3	727	1	0	0	0	0	0	1	0	0	10570	827	29	2	419	2	NMNAT1	1	10041198	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8393372	10041198	239209423	4	63710										
CASZ1	0	genome.wustl.edu	37	chr1	10705025	10705025	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtatttgaagccattggctgCccgccgctccgccttctcat	9	15	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	10705025	10705025	C	G	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.3817	p.A1273P	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	72	0	0	29	12	29.27	-	-	-	G	10705025	C	G	10705025	3	3	727	1	0	0	0	0	1	0	0	0	2710	739	26	4	1478	4	CASZ1	1	10705025	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	663827	10705025	238545596	5	63711										
SRM	0	genome.wustl.edu	37	chr1	11116764	11116764	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agggtcagcttcgagctagaGtagccaatggccatgcctgg	14	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	11116764	11116764	G	T	SNP	SRM	ENST00000376957	human	ensembl	69_37n	-1	known	nonsense	c.432	p.Y144*	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	-	no_errors	SRM	HGNC	ENSG00000116649	91	0	0	49	12	19.67	-	-	-	T	11116764	G	T	11116764	4	4	727	1	0	0	0	0	0	1	0	0	15242	1024	36	4	496	4	SRM	1	11116764	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	411739	11116764	238133857	6	63712										
CLCN6	0	genome.wustl.edu	37	chr1	11898657	11898657	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacacccacgtctcccaagtCttcaacctgttcagaacgat	5	15	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	11898657	11898657	C	G	SNP	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	silent	c.2469	p.V823	0.906	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	50	0	0	27	10	27.03	-	-	-	G	11898657	C	G	11898657	2	3	727	1	0	0	0	0	0	0	0	1	3497	900	32	2		2	CLCN6	1	11898657	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	781893	11898657	237351964	7	63713										
VPS13D	0	genome.wustl.edu	37	chr1	12381932	12381932	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgtggatcccgtacaaattCaaatggagttggtggggaat	13	5	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	12381932	12381932	C	G	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.7615	p.Q2539E	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	67	0	0	43	15	25.86	-	-	-	G	12381932	C	G	12381932	3	3	727	1	0	0	0	0	1	0	0	0	17289	827	29	2	7741	2	VPS13D	1	12381932	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	483275	12381932	236868689	8	63714										
PRAMEF6	0	genome.wustl.edu	37	chr1	13001260	13001260	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcaagggctgctgtcctctCatccttggacagtcctgcac	10	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	13001260	13001260	C	T	SNP	PRAMEF6	ENST00000355096	human	ensembl	69_37n	-1	known	missense	c.423	p.M141I	0.000	NULL	NULL	-	no_errors	PRAMEF6	HGNC	ENSG00000232423	73	0	0	53	13	19.7	-	-	-	T	13001260	C	T	13001260	3	4	727	1	0	0	0	0	1	0	0	0	12518	826	29	2	1015	2	PRAMEF6	1	13001260	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	619328	13001260	236249361	9	63715										
DNAJC16	0	genome.wustl.edu	37	chr1	15888676	15888676	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgctgagactaccaagttGagcaaaccctttgaggcttt	9	10	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	15888676	15888676	G	C	SNP	DNAJC16	ENST00000375847	human	ensembl	69_37n	1	known	missense	c.1194	p.L398F	0.000	NULL	pfam_DnaJ_N,pfam_Thioredoxin_domain,superfamily_DnaJ_N,superfamily_Thioredoxin-like_fold,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC16	HGNC	ENSG00000116138	116	0	0	85	25	22.73	-	-	-	C	15888676	G	C	15888676	3	2	727	1	0	0	0	0	1	0	0	0	4670	1281	45	2	1224	2	DNAJC16	1	15888676	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2887416	15888676	233361945	10	63716										
DNAJC16	0	genome.wustl.edu	37	chr1	15890499	15890499	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagacccttggattgggagtGagagtgacaaatttatcctc	11	7	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	15890499	15890499	G	C	SNP	DNAJC16	ENST00000375847	human	ensembl	69_37n	1	known	missense	c.1414	p.E472Q	0.999	NULL	pfam_DnaJ_N,pfam_Thioredoxin_domain,superfamily_DnaJ_N,superfamily_Thioredoxin-like_fold,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC16	HGNC	ENSG00000116138	57	0	0	59	12	16.9	-	-	-	C	15890499	G	C	15890499	3	2	727	1	0	0	0	0	1	0	0	0	4670	1291	45	2	1448	2	DNAJC16	1	15890499	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1823	15890499	233360122	11	63717										
ZBTB17	0	genome.wustl.edu	37	chr1	16270685	16270685	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctgggtgaacaagctgatGagctcctggaggccggggct	16	10	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	16270685	16270685	G	A	SNP	ZBTB17	ENST00000448462	human	ensembl	69_37n	-1	known	missense	c.1292	p.S431L	0.002	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	11	0	0	8	4	33.33	-	-	-	A	16270685	G	A	16270685	3	1	727	1	0	0	0	0	1	0	0	0	17623	1305	45	2		2	ZBTB17	1	16270685	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	380186	16270685	232979936	12	63718										
ZBTB17	0	genome.wustl.edu	37	chr1	16274922	16274922	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accacaaaggtgcagtcacaGagaagccccagctgccgctg	11	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	16274922	16274922	G	C	SNP	ZBTB17	ENST00000375733	human	ensembl	69_37n	-1	known	silent	c.69	p.L23	0.986	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809	30	0	0	13	6	31.58	-	-	-	C	16274922	G	C	16274922	2	2	727	1	0	0	0	0	0	0	0	1	17623	929	33	2		2	ZBTB17	1	16274922	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4237	16274922	232975699	13	63719										
CLCNKA	0	genome.wustl.edu	37	chr1	16356470	16356470	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtggccaggagctgccatCgggcgcctcttgggagaggc	17	12	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	16356470	16356470	C	T	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	silent	c.1308	p.I436	0.909	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	51	0	0	38	14	26.92	-	-	-	T	16356470	C	T	16356470	2	4	727	1	0	0	0	0	0	0	0	1	3499	874	31	1		1	CLCNKA	1	16356470	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	81548	16356470	232894151	14	63720										
NECAP2	0	genome.wustl.edu	37	chr1	16778398	16778398	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctgccagcacaggagggctGagcctgcttccccctccccc	10	20	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	16778398	16778398	G	A	SNP	NECAP2	ENST00000443980	human	ensembl	69_37n	1	known	silent	c.555	p.L185	1.000	NULL	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191	39	0	0	21	4	16	-	-	-	A	16778398	G	A	16778398	2	1	727	1	0	0	0	0	0	0	0	1	10380	1277	45	2		2	NECAP2	1	16778398	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	421928	16778398	232472223	15	63721										
AKR7L	0	genome.wustl.edu	37	chr1	19595190	19595190	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctcgaagtggtgctccttcCagaagctgttcagtggggat	13	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	19595190	19595190	C	T	SNP	AKR7L	ENST00000420396	human	ensembl	69_37n	-1	known	nonsense	c.176	p.W59*	1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7L	HGNC	ENSG00000211454	36	0	0	18	4	18.18	-	-	-	T	19595190	C	T	19595190	4	4	727	1	0	0	0	0	0	1	0	0	477	595	21	4	293	4	AKR7L	1	19595190	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2816792	19595190	229655431	16	63722										
HP1BP3	0	genome.wustl.edu	37	chr1	21076289	21076289	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagtggtagagcaggtcttCggctcattcatggcagcaat	13	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	21076289	21076289	C	T	SNP	HP1BP3	ENST00000312239	human	ensembl	69_37n	-1	known	silent	c.1068	p.P356	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5	-	no_errors	HP1BP3	HGNC	ENSG00000127483	94	0	0	42	9	17.65	-	-	-	T	21076289	C	T	21076289	2	4	727	1	0	0	0	0	0	0	0	1	7379	871	31	1		1	HP1BP3	1	21076289	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1481099	21076289	228174332	17	63723										
SLC9A1	0	genome.wustl.edu	37	chr1	27436083	27436083	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgtagctgtagaggaagacGaagagcggctcgatgacccg	15	8	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	27436083	27436083	G	A	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	silent	c.999	p.F333	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	65	0	0	27	8	22.86	-	-	-	A	27436083	G	A	27436083	2	1	727	1	0	0	0	0	0	0	0	1	14798	1049	37	1		1	SLC9A1	1	27436083	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6359794	27436083	221814538	18	63724										
WASF2	0	genome.wustl.edu	37	chr1	27739104	27739104	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaggcaagttgtcctcggaGaaggaaggagaaggtgaaga	18	4	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	27739104	27739104	G	C	SNP	WASF2	ENST00000430629	human	ensembl	69_37n	-1	known	missense	c.786	p.F262L	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF2	HGNC	ENSG00000158195	138	0	0	90	27	23.08	-	-	-	C	27739104	G	C	27739104	3	2	727	1	0	0	0	0	1	0	0	0	17350	933	33	2	722	2	WASF2	1	27739104	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	303021	27739104	221511517	19	63725										
CSMD2	0	genome.wustl.edu	37	chr1	34291356	34291356	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcttcacacctcgagacttCaactcaatttgcttcttgac	5	13	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	34291356	34291356	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.1053	p.L351	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	58	0	0	39	12	23.53	-	-	-	T	34291356	C	T	34291356	2	4	727	1	0	0	0	0	0	0	0	1	3977	825	29	2		2	CSMD2	1	34291356	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6552252	34291356	214959265	20	63726										
ZMYM4	0	genome.wustl.edu	37	chr1	35836131	35836131	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcagaggaaagggtctactCagctattctgctccacactg	9	11	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	35836131	35836131	C	T	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	nonsense	c.1084	p.Q362*	1.000	pfam_Znf_MYM,smart_TRASH	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	64	0	0	41	8	16.33	-	-	-	T	35836131	C	T	35836131	4	4	727	1	0	0	0	0	0	1	0	0	17798	827	29	2	1110	2	ZMYM4	1	35836131	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1544775	35836131	213414490	21	63727										
C1orf216	0	genome.wustl.edu	37	chr1	36181601	36181601	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcatagccgttgtcctccaGaggggagcagactgtgccag	15	11	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	36181601	36181601	G	A	SNP	C1orf216	ENST00000270815	human	ensembl	69_37n	-1	known	silent	c.322	p.L108	0.815	NULL	NULL	-	no_errors	C1orf216	HGNC	ENSG00000142686	26	0	0	19	12	38.71	-	-	-	A	36181601	G	A	36181601	2	1	727	1	0	0	0	0	0	0	0	1	2051	933	33	2		2	C1orf216	1	36181601	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	345470	36181601	213069020	22	63728										
CSF3R	0	genome.wustl.edu	37	chr1	36932074	36932074	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggggctggggttaccagggTccccaaggggctggcctgga	19	10	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	36932074	36932074	T	A	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.2476	p.T826S	0.001	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	31	0	0	12	6	31.58	-	-	-	A	36932074	T	A	36932074	3	1	727	1	0	0	0	0	1	0	0	0	3969	1667	58	5	228	5	CSF3R	1	36932074	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	750473	36932074	212318547	23	63729										
MACF1	0	genome.wustl.edu	37	chr1	39853963	39853963	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggcatgggtgctattggcaGagacactgatagcctccagt	13	9	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	39853963	39853963	G	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.9263	p.R3088K	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	44	0	0	43	6	12.24	-	-	-	A	39853963	G	A	39853963	3	1	727	1	0	0	0	0	1	0	0	0	9211	942	33	2	15624	2	MACF1	1	39853963	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2921889	39853963	209396658	24	63730										
MACF1	0	genome.wustl.edu	37	chr1	39950348	39950348	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcggacatcccttgctggtGataccagcaatagttcttcc	9	12	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	39950348	39950348	G	T	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.15982	p.D5328Y	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	46	0	0	36	16	30.77	-	-	-	T	39950348	G	T	39950348	3	4	727	1	0	0	0	0	1	0	0	0	9211	1290	45	2	22525	2	MACF1	1	39950348	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	96385	39950348	209300273	25	63731										
SCMH1	0	genome.wustl.edu	37	chr1	41579178	41579178	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attcccattttgaagaagttGtgggaaggcgatggtggctc	14	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	41579178	41579178	G	A	SNP	SCMH1	ENST00000326197	human	ensembl	69_37n	-1	known	silent	c.492	p.H164	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803	64	0	0	46	11	19.3	-	-	-	A	41579178	G	A	41579178	2	1	727	1	0	0	0	0	0	0	0	1	13996	1368	48	4		4	SCMH1	1	41579178	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1628830	41579178	207671443	26	63732										
KDM4A	0	genome.wustl.edu	37	chr1	44134883	44134883	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atctgagttctgagcagtatGagatgacggagtgcccggca	14	8	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	44134883	44134883	G	C	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.1276	p.E426Q	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	57	0	0	28	11	28.21	-	-	-	C	44134883	G	C	44134883	3	2	727	1	0	0	0	0	1	0	0	0	8182	1291	45	2	1310	2	KDM4A	1	44134883	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2555705	44134883	205115738	27	63733										
HECTD3	0	genome.wustl.edu	37	chr1	45474006	45474006	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatgaatctggcatgggtaGatagactgcagctaaagagt	13	5	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	45474006	45474006	G	C	SNP	HECTD3	ENST00000372168	human	ensembl	69_37n	-1	known	missense	c.56	p.S19C	0.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107	68	0	0	33	11	25	-	-	-	C	45474006	G	C	45474006	3	2	727	1	0	0	0	0	1	0	0	0	7092	957	33	2		2	HECTD3	1	45474006	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1339123	45474006	203776615	28	63734										
IPP	0	genome.wustl.edu	37	chr1	46195372	46195372	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaacttgttctctttgggaGatttgcatacttcacagtac	7	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	46195372	46195372	G	C	SNP	IPP	ENST00000396478	human	ensembl	69_37n	-1	known	missense	c.794	p.S265C	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IPP	HGNC	ENSG00000197429	116	0	0	81	12	12.9	-	-	-	C	46195372	G	C	46195372	3	2	727	1	0	0	0	0	1	0	0	0	7854	942	33	2	1086	2	IPP	1	46195372	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	721366	46195372	203055249	29	63735										
AGBL4	0	genome.wustl.edu	37	chr1	49711501	49711501	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccatctctatagagactcttGgttttactgaagttaacaat	6	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	49711501	49711501	G	A	SNP	AGBL4	ENST00000371839	human	ensembl	69_37n	-1	known	silent	c.318	p.T106	1.000	NULL	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094	97	0	0	73	22	22.92	-	-	-	A	49711501	G	A	49711501	2	1	727	1	0	0	0	0	0	0	0	1	377	1335	47	4		4	AGBL4	1	49711501	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3516129	49711501	199539120	30	63736										
FAF1	0	genome.wustl.edu	37	chr1	50956274	50956274	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccccacctcacgttcctcttCttgttctttgcgaatctgct	5	16	5	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	50956274	50956274	C	G	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	missense	c.1639	p.E547Q	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	91	0	0	76	43	36.13	-	-	-	G	50956274	C	G	50956274	3	3	727	1	0	0	0	0	1	0	0	0	5409	922	32	2	325	2	FAF1	1	50956274	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1244773	50956274	198294347	31	63737										
RAB3B	0	genome.wustl.edu	37	chr1	52399020	52399020	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcaaggagctggcccttctCagtgggaacaaccctctctt	10	13	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	52399020	52399020	C	T	SNP	RAB3B	ENST00000371655	human	ensembl	69_37n	-1	known	missense	c.442	p.E148K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3B	HGNC	ENSG00000169213	54	0	0	37	5	11.9	-	-	-	T	52399020	C	T	52399020	3	4	727	1	0	0	0	0	1	0	0	0	13015	835	29	2	225	2	RAB3B	1	52399020	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1442746	52399020	196851601	32	63738										
FGGY	0	genome.wustl.edu	37	chr1	59922675	59922675	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagtggacatattcagcagaGaaaggctgggacgacagttt	13	6	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	59922675	59922675	G	C	SNP	FGGY	ENST00000303721	human	ensembl	69_37n	1	known	missense	c.597	p.E199D	0.314	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456	152	0	0	121	68	35.98	-	-	-	C	59922675	G	C	59922675	3	2	727	1	0	0	0	0	1	0	0	0	5917	933	33	2	615	2	FGGY	1	59922675	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7523655	59922675	189327946	33	63739										
CYP2J2	0	genome.wustl.edu	37	chr1	60378062	60378062	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatgatatgggaatgtgtatCagatgaaggacaggagaaga	14	2	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	60378062	60378062	C	T	SNP	CYP2J2	ENST00000492633	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	CYP2J2	HGNC	ENSG00000134716	18	0	0	21	11	33.33	-	-	-	T	60378062	C	T	60378062	1	4	727	0	1	0	0	0	0	0	0	0	4203	841	29	2		2	CYP2J2	1	60378062	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	455387	60378062	188872559	34	63740										
KANK4	0	genome.wustl.edu	37	chr1	62734158	62734158	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcctcaccgctggtctcctCacttgaggtggtctcatacc	9	15	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	62734158	62734158	C	T	SNP	KANK4	ENST00000371153	human	ensembl	69_37n	-1	known	missense	c.2032	p.E678K	1.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	37	0	0	32	14	30.43	-	-	-	T	62734158	C	T	62734158	3	4	727	1	0	0	0	0	1	0	0	0	8033	835	29	2	979	2	KANK4	1	62734158	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2356096	62734158	186516463	35	63741										
DOCK7	0	genome.wustl.edu	37	chr1	62959997	62959997	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttccggtcctccagcatgctCaaatattcagcaacaagtgc	7	13	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	62959997	62959997	C	T	SNP	DOCK7	ENST00000454575	human	ensembl	69_37n	-1	known	missense	c.2653	p.E885K	1.000	NULL	pfam_DOCK,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK7	HGNC	ENSG00000116641	57	0	0	26	13	33.33	-	-	-	T	62959997	C	T	62959997	3	4	727	1	0	0	0	0	1	0	0	0	4727	825	29	2	1300	2	DOCK7	1	62959997	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	225839	62959997	186290624	36	63742										
DOCK7	0	genome.wustl.edu	37	chr1	62961313	62961313	+	Missense_Mutation	SNP	C	C	G													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttccttcattttcacagtatCagaaagaatcatatggagat							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	62961313	62961313	C	G	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4936	p.D1646H	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	76	0	0	69	24	25.81	-	-	-	G	62961313	C	G	62961313	3	3	727	1	0	0	0	0	1	0	0	0	4727	826	29	2	1507	2	DOCK7	1	62961313	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1316	62961313	186289308	37	63743	466	2								
DOCK7	0	genome.wustl.edu	37	chr1	62961323	62961323	+	Missense_Mutation	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcacagtatcagaaagaatCatatggagattgaaaaccag							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	62961323	62961323	C	T	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4926	p.M1642I	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	74	0	0	69	23	24.73	-	-	-	T	62961323	C	T	62961323	3	4	727	1	0	0	0	0	1	0	0	0	4727	826	29	2	1517	2	DOCK7	1	62961323	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10	62961323	186289298	38	63744	466	2								
MIER1	0	genome.wustl.edu	37	chr1	67411967	67411967	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttcagctctgaaatagaaGatcttgcaagggtaaataac	8	7	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	67411967	67411967	G	A	SNP	MIER1	ENST00000401041	human	ensembl	69_37n	1	known	missense	c.328	p.D110N	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160	90	0	0	56	32	36.36	-	-	-	A	67411967	G	A	67411967	3	1	727	1	0	0	0	0	1	0	0	0	9651	942	33	2	419	2	MIER1	1	67411967	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4450644	67411967	181838654	39	63745										
WLS	0	genome.wustl.edu	37	chr1	68603524	68603524	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacaagaacatcagagcaaaGacatacagattccacatccc	5	12	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	68603524	68603524	G	C	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	silent	c.1455	p.V485	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	55	0	0	37	7	15.91	-	-	-	C	68603524	G	C	68603524	2	2	727	1	0	0	0	0	0	0	0	1	17473	929	33	2		2	WLS	1	68603524	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1191557	68603524	180647097	40	63746										
WLS	0	genome.wustl.edu	37	chr1	68624928	68624928	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catggagacttctgcattttCtcctgcaagagaaaggatgc	10	9	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	68624928	68624928	C	G	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.382	p.E128Q	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	46	0	0	32	7	17.95	-	-	-	G	68624928	C	G	68624928	3	3	727	1	0	0	0	0	1	0	0	0	17473	922	32	2	1409	2	WLS	1	68624928	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	21404	68624928	180625693	41	63747										
SPATA1	0	genome.wustl.edu	37	chr1	84991642	84991642	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ataatggtgttaatgaggctGatggaacaatccacagacca	10	7	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	84991642	84991642	G	C	SNP	SPATA1	ENST00000370638	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	37	0	0	36	5	12.2	-	-	-	C	84991642	G	C	84991642	1	2	727	0	1	0	0	0	0	0	0	0	15089	1290	45	2		2	SPATA1	1	84991642	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	16366714	84991642	164258979	42	63748										
GBP2	0	genome.wustl.edu	37	chr1	89573883	89573883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtatgttacatattggctccAatgatttgcttctcatctgg	8	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	89573883	89573883	A	C	SNP	GBP2	ENST00000370466	human	ensembl	69_37n	-1	known	missense	c.1751	p.L584W	0.000	NULL	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP2	HGNC	ENSG00000162645	146	0	0	98	11	10.09	-	-	-	C	89573883	A	C	89573883	3	2	727	1	0	0	0	0	1	0	0	0	6324	131	5	5	28	5	GBP2	1	89573883	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	4582241	89573883	159676738	43	63749										
CDC7	0	genome.wustl.edu	37	chr1	91981408	91981408	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcagagcaccagaggtcttGacaaagtgccccaatcaaac	8	12	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	91981408	91981408	G	C	SNP	CDC7	ENST00000234626	human	ensembl	69_37n	1	known	missense	c.1155	p.L385F	0.995	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC7	HGNC	ENSG00000097046	44	0	0	16	6	27.27	-	-	-	C	91981408	G	C	91981408	3	2	727	1	0	0	0	0	1	0	0	0	3113	1281	45	2	1189	2	CDC7	1	91981408	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2407525	91981408	157269213	44	63750										
ARHGAP29	0	genome.wustl.edu	37	chr1	94696978	94696978	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaacctgaaaatatggcttCtttcaaatatagtaacatgt	5	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	94696978	94696978	C	T	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.190	p.E64K	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	82	0	0	47	21	30.88	-	-	-	T	94696978	C	T	94696978	3	4	727	1	0	0	0	0	1	0	0	0	880	922	32	2	3683	2	ARHGAP29	1	94696978	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2715570	94696978	154553643	45	63751										
GPSM2	0	genome.wustl.edu	37	chr1	109457025	109457025	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacttatgaagttaacaccaGaaaaggtgggtggcaggttt	12	5	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	109457025	109457025	G	A	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.1258	p.E420K	1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	63	0	0	26	17	39.53	-	-	-	A	109457025	G	A	109457025	3	1	727	1	0	0	0	0	1	0	0	0	6786	943	33	2	1296	2	GPSM2	1	109457025	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14760047	109457025	139793596	46	63752										
KCNA2	0	genome.wustl.edu	37	chr1	111147111	111147111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcacattcacaggtcgcctCaatcggccccctgactggta	10	15	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	111147111	111147111	C	G	SNP	KCNA2	ENST00000316361	human	ensembl	69_37n	-1	known	missense	c.294	p.L98F	0.998	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301	26	0	0	17	7	28	-	-	-	G	111147111	C	G	111147111	3	3	727	1	0	0	0	0	1	0	0	0	8057	825	29	2	1209	2	KCNA2	1	111147111	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1690086	111147111	138103510	47	63753										
WNT2B	0	genome.wustl.edu	37	chr1	113010181	113010181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgttggatggccttggagtgGtagccataagcatttttgga	14	5	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	113010181	113010181	G	T	SNP	WNT2B	ENST00000369686	human	ensembl	69_37n	1	known	missense	c.22	p.V8L	0.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	129	0	0	70	16	18.18	-	-	-	T	113010181	G	T	113010181	3	4	727	1	0	0	0	0	1	0	0	0	17484	1261	44	4	24	4	WNT2B	1	113010181	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1863070	113010181	136240440	48	63754										
MOV10	0	genome.wustl.edu	37	chr1	113242703	113242703	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttatcgctcagttaatcctCagatgtgtccattttcacag	6	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	113242703	113242703	C	G	SNP	MOV10	ENST00000468624	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363	17	0	0	6	5	45.45	-	-	-	G	113242703	C	G	113242703	1	3	727	0	1	0	0	0	0	0	0	0	9790	841	29	2		2	MOV10	1	113242703	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	232522	113242703	136007918	49	63755										
SLC16A1	0	genome.wustl.edu	37	chr1	113460161	113460161	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcactagaataatgctgactCttcccataactactaagaaa	4	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	113460161	113460161	C	G	SNP	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	missense	c.867	p.K289N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	34	0	0	42	14	25	-	-	-	G	113460161	C	G	113460161	3	3	727	1	0	0	0	0	1	0	0	0	14491	912	32	2	643	2	SLC16A1	1	113460161	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	217458	113460161	135790460	50	63756										
DCLRE1B	0	genome.wustl.edu	37	chr1	114454081	114454081	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgtgcctttgtcgcagcactGaagccttgccaggtggtgcc	13	13	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	114454081	114454081	G	A	SNP	DCLRE1B	ENST00000369563	human	ensembl	69_37n	1	known	silent	c.867	p.L289	0.426	pfam_DRMBL	pfam_DRMBL	-	no_errors	DCLRE1B	HGNC	ENSG00000118655	53	0	0	38	6	13.64	-	-	-	A	114454081	G	A	114454081	2	1	727	1	0	0	0	0	0	0	0	1	4326	1277	45	2		2	DCLRE1B	1	114454081	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	993920	114454081	134796540	51	63757										
CSDE1	0	genome.wustl.edu	37	chr1	115282499	115282499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attgttgtggagaaggtttgGatcaaagctcatctgtttta	11	4	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	115282499	115282499	G	C	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.151	p.P51A	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	38	0	0	41	11	21.15	-	-	-	C	115282499	G	C	115282499	3	2	727	1	0	0	0	0	1	0	0	0	3961	1174	41	2	2455	2	CSDE1	1	115282499	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	828418	115282499	133968122	52	63758										
NOTCH2	0	genome.wustl.edu	37	chr1	120539920	120539920	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttccatttgcacagggatGagacaggcaggcatccgtcc	11	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	120539920	120539920	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.451	p.H151Y	0.998	pirsf_Notch,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	61	0	0	32	19	37.25	-	-	-	A	120539920	G	A	120539920	3	1	727	1	0	0	0	0	1	0	0	0	10620	1290	45	2	7088	2	NOTCH2	1	120539920	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5257421	120539920	128710701	53	63759										
SF3B4	0	genome.wustl.edu	37	chr1	149898614	149898614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagatgaccccaaaggcgctGaaagtatcataaagcaactt	8	9	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	149898614	149898614	G	A	SNP	SF3B4	ENST00000271628	human	ensembl	69_37n	-1	known	silent	c.360	p.F120	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	103	0	0	84	27	24.32	-	-	-	A	149898614	G	A	149898614	2	1	727	1	0	0	0	0	0	0	0	1	14241	1281	45	2		2	SF3B4	1	149898614	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	29358694	149898614	99352007	54	63760										
PIP5K1A	0	genome.wustl.edu	37	chr1	151210675	151210675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtatgggtggcatccctgCccggaatagtaaaggggaaa	14	8	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	151210675	151210675	C	T	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	missense	c.1163	p.A388V	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	71	0	0	76	30	28.3	-	-	-	T	151210675	C	T	151210675	3	4	727	1	0	0	0	0	1	0	0	0	12013	739	26	4	1201	4	PIP5K1A	1	151210675	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1312061	151210675	98039946	55	63761										
PI4KB	0	genome.wustl.edu	37	chr1	151266585	151266585	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcagcatcttatagtagttGaacatgtcgccatccaggcc	8	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	151266585	151266585	G	T	SNP	PI4KB	ENST00000446339	human	ensembl	69_37n	-1	putative	nonsense	c.95	p.S32*	1.000	superfamily_Kinase-like_dom	superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PI4KB	HGNC	ENSG00000143393	59	0	0	45	9	16.67	-	-	-	T	151266585	G	T	151266585	4	4	727	1	0	0	0	0	0	1	0	0	11948	1281	45	2	280	2	PI4KB	1	151266585	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	55910	151266585	97984036	56	63762										
TCHH	0	genome.wustl.edu	37	chr1	152084986	152084986	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttcttcctcctggaacactCtgtcttgccgctctcgcctt	6	17	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	152084986	152084986	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.707	p.R236K	0.011	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	37	0	0	44	13	22.81	-	-	-	T	152084986	C	T	152084986	3	4	727	1	0	0	0	0	1	0	0	0	15795	913	32	2	5128	2	TCHH	1	152084986	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	818401	152084986	97165635	57	63763										
NUP210L	0	genome.wustl.edu	37	chr1	154002391	154002391	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccaggatctgtacttcatcaGagagttccaacaaattcccc	6	13	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	154002391	154002391	G	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.3836	p.S1279C	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	51	0	0	60	14	18.92	-	-	-	C	154002391	G	C	154002391	3	2	727	1	0	0	0	0	1	0	0	0	10834	942	33	2	1882	2	NUP210L	1	154002391	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1917405	154002391	95248230	58	63764										
ZBTB7B	0	genome.wustl.edu	37	chr1	154987144	154987144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgcaggagaagatggggaGccccgaggatgacctgattg	16	8	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	154987144	154987144	G	A	SNP	ZBTB7B	ENST00000417934	human	ensembl	69_37n	1	known	missense	c.110	p.S37N	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685	28	0	0	27	6	17.65	-	-	-	A	154987144	G	A	154987144	3	1	727	1	0	0	0	0	1	0	0	0	17650	971	34	4	10	4	ZBTB7B	1	154987144	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	984753	154987144	94263477	59	63765										
DAP3	0	genome.wustl.edu	37	chr1	155686854	155686854	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcgccaaagcattgctgctCacctagataaccaggttcca	7	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	155686854	155686854	C	T	SNP	DAP3	ENST00000343043	human	ensembl	69_37n	1	known	missense	c.103	p.H35Y	0.001	NULL	pfam_Ribosomal_S23/S29_mit,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676	55	0	0	68	16	19.05	-	-	-	T	155686854	C	T	155686854	3	4	727	1	0	0	0	0	1	0	0	0	4266	826	29	2	109	2	DAP3	1	155686854	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	699710	155686854	93563767	60	63766										
SEMA4A	0	genome.wustl.edu	37	chr1	156128490	156128490	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accttggcgttctggcccccCagcctctctccccatttagg	8	18	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	156128490	156128490	C	T	SNP	SEMA4A	ENST00000470306	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEMA4A	HGNC	ENSG00000196189	35	0	0	27	10	26.32	-	-	-	T	156128490	C	T	156128490	1	4	727	0	1	0	0	0	0	0	0	0	14119	609	21	4		4	SEMA4A	1	156128490	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	441636	156128490	93122131	61	63767										
SLC25A44	0	genome.wustl.edu	37	chr1	156180300	156180300	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggagaggacagcaccctctCcaggtgctcccaccacacac	9	17	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	156180300	156180300	C	G	SNP	SLC25A44	ENST00000469537	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A44	HGNC	ENSG00000160785	14	0	0	11	7	38.89	-	-	-	G	156180300	C	G	156180300	1	3	727	0	1	0	0	0	0	0	0	0	14598	870	30	2		2	SLC25A44	1	156180300	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	51810	156180300	93070321	62	63768										
IQGAP3	0	genome.wustl.edu	37	chr1	156521568	156521568	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacagggaggctgacatcatCtaggccagctgcaggaagca	14	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	156521568	156521568	C	G	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.1663	p.D555H	0.703	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	57	0	0	46	7	13.21	-	-	-	G	156521568	C	G	156521568	3	3	727	1	0	0	0	0	1	0	0	0	7870	913	32	2	3328	2	IQGAP3	1	156521568	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	341268	156521568	92729053	63	63769										
TTC24	0	genome.wustl.edu	37	chr1	156555599	156555599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccctgcagagggacagtcctCggcaaagcctccatctatag	10	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	156555599	156555599	C	T	SNP	TTC24	ENST00000340086	human	ensembl	69_37n	1	known	missense	c.869	p.S290L	0.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTC24	HGNC	ENSG00000187862	66	0	0	49	16	24.62	-	-	-	T	156555599	C	T	156555599	3	4	727	1	0	0	0	0	1	0	0	0	16789	871	31	1	1581	1	TTC24	1	156555599	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	34031	156555599	92695022	64	63770										
FCRL5	0	genome.wustl.edu	37	chr1	157509116	157509116	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccctcaaaaatcaggtcctCaggagagctgaggttgagga	12	9	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	157509116	157509116	C	T	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1162	p.E388K	0.000	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	58	0	0	46	18	28.12	-	-	-	T	157509116	C	T	157509116	3	4	727	1	0	0	0	0	1	0	0	0	5844	835	29	2	1815	2	FCRL5	1	157509116	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	953517	157509116	91741505	65	63771										
FCRL2	0	genome.wustl.edu	37	chr1	157737109	157737109	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttccagaatgttctgcagtCaaagagaggttgaaggaggc	13	6	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	157737109	157737109	C	G	SNP	FCRL2	ENST00000361516	human	ensembl	69_37n	-1	known	missense	c.1074	p.L358F	0.203	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL2	HGNC	ENSG00000132704	30	0	0	28	9	24.32	-	-	-	G	157737109	C	G	157737109	3	3	727	1	0	0	0	0	1	0	0	0	5841	825	29	2	480	2	FCRL2	1	157737109	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	227993	157737109	91513512	66	63772										
OR6K6	0	genome.wustl.edu	37	chr1	158725148	158725148	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggatcctgcttttgtggcttCctccttgtgcttcctgagat	10	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	158725148	158725148	C	T	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	1	known	silent	c.543	p.F181	0.112	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	79	0	0	51	19	26.76	-	-	-	T	158725148	C	T	158725148	2	4	727	1	0	0	0	0	0	0	0	1	11277	854	30	2		2	OR6K6	1	158725148	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	988039	158725148	90525473	67	63773										
SLAMF9	0	genome.wustl.edu	37	chr1	159921619	159921619	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatcccttggccaggaggcaGaaggctgttgaaggcttctc	13	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	159921619	159921619	G	A	SNP	SLAMF9	ENST00000368093	human	ensembl	69_37n	-1	known	silent	c.702	p.F234	0.878	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF9	HGNC	ENSG00000162723	53	0	0	80	9	10	-	-	-	A	159921619	G	A	159921619	2	1	727	1	0	0	0	0	0	0	0	1	14460	942	33	2		2	SLAMF9	1	159921619	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1196471	159921619	89329002	68	63774										
USP21	0	genome.wustl.edu	37	chr1	161132413	161132413	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccatcccaacagcctttgcaGatgtgattggtgccctctgg	10	13	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	161132413	161132413	G	C	SNP	USP21	ENST00000289865	human	ensembl	69_37n	1	known	missense	c.790	p.D264H	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	50	0	0	34	9	20.93	-	-	-	C	161132413	G	C	161132413	3	2	727	1	0	0	0	0	1	0	0	0	17150	942	33	2	804	2	USP21	1	161132413	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1210794	161132413	88118208	69	63775										
PPOX	0	genome.wustl.edu	37	chr1	161138049	161138049	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcttcataccccaccccctCataattcccaaaactcatta	0	18	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	161138049	161138049	C	T	SNP	PPOX	ENST00000490768	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPOX	HGNC	ENSG00000143224	9	0	0	10	5	33.33	-	-	-	T	161138049	C	T	161138049	1	4	727	0	1	0	0	0	0	0	0	0	12425	841	29	2		2	PPOX	1	161138049	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5636	161138049	88112572	70	63776										
GPR161	0	genome.wustl.edu	37	chr1	168073859	168073859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaaaggcagcaccaacacgGacagcaggaagttggacaga	12	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	168073859	168073859	G	A	SNP	GPR161	ENST00000537209	human	ensembl	69_37n	-1	known	missense	c.290	p.S97F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147	105	0	0	82	16	16.33	-	-	-	A	168073859	G	A	168073859	3	1	727	1	0	0	0	0	1	0	0	0	6715	1174	41	2	1379	2	GPR161	1	168073859	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6935810	168073859	81176762	71	63777										
TBX19	0	genome.wustl.edu	37	chr1	168267010	168267010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttttgccaaagccttcttgGatgccaaggaaaggtaagta	10	8	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	168267010	168267010	G	A	SNP	TBX19	ENST00000367821	human	ensembl	69_37n	1	known	missense	c.652	p.D218N	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178	94	0	0	109	16	12.8	-	-	-	A	168267010	G	A	168267010	3	1	727	1	0	0	0	0	1	0	0	0	15749	1174	41	2	666	2	TBX19	1	168267010	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	193151	168267010	80983611	72	63778										
SCYL3	0	genome.wustl.edu	37	chr1	169828266	169828266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctcctcccacaaccacctCtggtccaagcagagagacca	6	17	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	169828266	169828266	C	G	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	missense	c.1228	p.E410Q	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	106	0	0	76	25	24.27	-	-	-	G	169828266	C	G	169828266	3	3	727	1	0	0	0	0	1	0	0	0	14037	922	32	2	1016	2	SCYL3	1	169828266	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1561256	169828266	79422355	73	63779										
C1orf129	0	genome.wustl.edu	37	chr1	170994466	170994466	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttttattctcagattatttCtcataggaactacattacag	4	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	170994466	170994466	C	T	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	missense	c.2186	p.S729F	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	116	0	0	130	23	15.03	-	-	-	T	170994466	C	T	170994466	3	4	727	1	0	0	0	0	1	0	0	0	2015	913	32	2	2386	2	C1orf129	1	170994466	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1166200	170994466	78256155	74	63780										
DARS2	0	genome.wustl.edu	37	chr1	173806108	173806108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtttttagtaccatccaggGaacctggaaagttttattct	8	7	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	173806108	173806108	G	A	SNP	DARS2	ENST00000361951	human	ensembl	69_37n	1	known	missense	c.694	p.E232K	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asp-tRNA-synth_IIb_bac/mt	pfam_aa-tRNA-synt_II,pfam_GAD_dom,pfam_NA-bd_OB_tRNA-helicase,superfamily_GAD_dom,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-synth_IIb_bac/mt	-	no_errors	DARS2	HGNC	ENSG00000117593	136	0	0	139	40	22.35	-	-	-	A	173806108	G	A	173806108	3	1	727	1	0	0	0	0	1	0	0	0	4274	1175	41	2	724	2	DARS2	1	173806108	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2811642	173806108	75444513	75	63781										
CEP350	0	genome.wustl.edu	37	chr1	179983440	179983440	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaatgaagagaagaaggctCaaaaggaggctacagaacag	12	5	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	179983440	179983440	C	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.1852	p.Q618E	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	69	0	0	76	26	25.49	-	-	-	G	179983440	C	G	179983440	3	3	727	1	0	0	0	0	1	0	0	0	3283	827	29	2	1886	2	CEP350	1	179983440	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6177332	179983440	69267181	76	63782										
CEP350	0	genome.wustl.edu	37	chr1	179989696	179989696	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctgagatgataagaccacaGagtgccatatcaagctttag	9	9	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	179989696	179989696	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.2787	p.Q929H	0.998	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	41	0	0	29	7	19.44	-	-	-	C	179989696	G	C	179989696	3	2	727	1	0	0	0	0	1	0	0	0	3283	933	33	2	2829	2	CEP350	1	179989696	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6256	179989696	69260925	77	63783										
CACNA1E	0	genome.wustl.edu	37	chr1	181721316	181721316	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatcaagaccatcaagtctCtgcgggtgctccgagttcta	9	12	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	181721316	181721316	C	G	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.3769	p.L1257V	0.983	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	50	0	0	53	15	22.06	-	-	-	G	181721316	C	G	181721316	3	3	727	1	0	0	0	0	1	0	0	0	2567	912	32	2	3875	2	CACNA1E	1	181721316	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1731620	181721316	67529305	78	63784										
HMCN1	0	genome.wustl.edu	37	chr1	186120829	186120829	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagtcaatggctttaccctCaccaatgcagtcttcaaaag	7	12	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	186120829	186120829	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.14850	p.L4950	1.000	pfam_G2_nidogen/fibulin_G2F,superfamily_Green_fluorescent_prot-like,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	52	0	0	63	10	13.7	-	-	-	T	186120829	C	T	186120829	2	4	727	1	0	0	0	0	0	0	0	1	7271	813	29	2		2	HMCN1	1	186120829	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4399513	186120829	63129792	79	63785										
ATP6V1G3	0	genome.wustl.edu	37	chr1	198492671	198492671	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgttcttctatttcatctgaGagattattctgagagcccat	7	8	5	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	198492671	198492671	G	C	SNP	ATP6V1G3	ENST00000367381	human	ensembl	69_37n	-1	known	silent	c.225	p.L75	0.000	pfam_V-ATPase_G,tigrfam_V-ATPase_G	pfam_V-ATPase_G,tigrfam_V-ATPase_G	-	no_errors	ATP6V1G3	HGNC	ENSG00000151418	146	0	0	155	48	23.65	-	-	-	C	198492671	G	C	198492671	2	2	727	1	0	0	0	0	0	0	0	1	1192	929	33	2		2	ATP6V1G3	1	198492671	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	12371842	198492671	50757950	80	63786										
KDM5B	0	genome.wustl.edu	37	chr1	202698837	202698837	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcccaaacctcactgacctCatctccttctggctgcaggc	8	17	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	202698837	202698837	C	A	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	nonsense	c.4495	p.E1499*	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	59	0	0	49	16	24.62	-	-	-	A	202698837	C	A	202698837	4	1	727	1	0	0	0	0	0	1	0	0	8187	835	29	2	147	2	KDM5B	1	202698837	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4206166	202698837	46551784	81	63787										
ADORA1	0	genome.wustl.edu	37	chr1	203134784	203134784	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctcttcctctttgccctcaGctggctgcctttgcacatcc	6	18	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	203134784	203134784	G	C	SNP	ADORA1	ENST00000309502	human	ensembl	69_37n	1	known	missense	c.737	p.S246T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adenosn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485	102	0	0	47	15	24.19	-	-	-	C	203134784	G	C	203134784	3	2	727	1	0	0	0	0	1	0	0	0	326	971	34	4	743	4	ADORA1	1	203134784	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	435947	203134784	46115837	82	63788										
NUCKS1	0	genome.wustl.edu	37	chr1	205693108	205693108	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atctttgtcttctgagtcctCactataaagggaggcaaaaa	8	8	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	205693108	205693108	C	T	SNP	NUCKS1	ENST00000367142	human	ensembl	69_37n	-1	known	missense	c.175	p.E59K	1.000	NULL	NULL	-	no_errors	NUCKS1	HGNC	ENSG00000069275	99	0	0	86	15	14.85	-	-	-	T	205693108	C	T	205693108	3	4	727	1	0	0	0	0	1	0	0	0	10793	840	29	2	572	2	NUCKS1	1	205693108	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2558324	205693108	43557513	83	63789										
PM20D1	0	genome.wustl.edu	37	chr1	205813966	205813966	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcatggcccagagaaatgaaGaaagatcttcgggggatgta	13	6	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	205813966	205813966	G	C	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	missense	c.549	p.F183L	1.000	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	26	0	0	37	7	15.91	-	-	-	C	205813966	G	C	205813966	3	2	727	1	0	0	0	0	1	0	0	0	12202	933	33	2	999	2	PM20D1	1	205813966	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	120858	205813966	43436655	84	63790										
PIGR	0	genome.wustl.edu	37	chr1	207112715	207112715	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccgggtgtgccggttgacaGaggtgggtgggtagtagcac	19	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	207112715	207112715	G	A	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.137	p.S46F	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	57	0	0	58	11	15.94	-	-	-	A	207112715	G	A	207112715	3	1	727	1	0	0	0	0	1	0	0	0	11971	942	33	2	2193	2	PIGR	1	207112715	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1298749	207112715	42137906	85	63791										
FCAMR	0	genome.wustl.edu	37	chr1	207134028	207134028	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaccctgagattgttgcttaGaaactggcgttgcttgtggg	13	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	207134028	207134028	G	A	SNP	FCAMR	ENST00000324852	human	ensembl	69_37n	-1	novel	missense	c.1193	p.S398F	0.308	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCAMR	HGNC	ENSG00000162897	99	0	0	88	24	21.43	-	-	-	A	207134028	G	A	207134028	3	1	727	1	0	0	0	0	1	0	0	0	5818	942	33	2	552	2	FCAMR	1	207134028	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	21313	207134028	42116593	86	63792										
SYT14	0	genome.wustl.edu	37	chr1	210187039	210187039	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttattatcttgatgctgctCctttttctctatattaataa	3	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	210187039	210187039	C	T	SNP	SYT14	ENST00000422431	human	ensembl	69_37n	1	known	silent	c.258	p.L86	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT14	HGNC	ENSG00000143469	227	0	0	257	53	17.1	-	-	-	T	210187039	C	T	210187039	2	4	727	1	0	0	0	0	0	0	0	1	15562	842	30	2		2	SYT14	1	210187039	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3053011	210187039	39063582	87	63793										
KCNH1	0	genome.wustl.edu	37	chr1	211192458	211192458	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagacattataagggaccaaGatggctgtatagaaggtcaa	12	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	211192458	211192458	G	C	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.699	p.I233M	1.000	prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	55	0	0	55	13	18.84	-	-	-	C	211192458	G	C	211192458	3	2	727	1	0	0	0	0	1	0	0	0	8085	932	33	2	2294	2	KCNH1	1	211192458	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1005419	211192458	38058163	88	63794										
TRAF5	0	genome.wustl.edu	37	chr1	211526623	211526623	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaggtatgccctgtggtttCatccgccagaattccggcaa	10	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	211526623	211526623	C	T	SNP	TRAF5	ENST00000261464	human	ensembl	69_37n	1	known	silent	c.42	p.F14	0.320	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512	35	0	0	45	7	13.46	-	-	-	T	211526623	C	T	211526623	2	4	727	1	0	0	0	0	0	0	0	1	16540	825	29	2		2	TRAF5	1	211526623	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	334165	211526623	37723998	89	63795										
ATF3	0	genome.wustl.edu	37	chr1	212788425	212788425	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagtgcttctgccatcgtccCctgcctgtcccctcctgggt	10	17	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	212788425	212788425	C	G	SNP	ATF3	ENST00000341491	human	ensembl	69_37n	1	known	missense	c.62	p.P21R	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772	55	0	0	43	18	29.51	-	-	-	G	212788425	C	G	212788425	3	3	727	1	0	0	0	0	1	0	0	0	1085	623	22	4	64	4	ATF3	1	212788425	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1261802	212788425	36462196	90	63796										
FAM71A	0	genome.wustl.edu	37	chr1	212799107	212799107	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcaccgtagcaggtgccttGagtgtggcagcagccaattc	14	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	212799107	212799107	G	C	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	missense	c.888	p.L296F	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	25	0	0	11	7	38.89	-	-	-	C	212799107	G	C	212799107	3	2	727	1	0	0	0	0	1	0	0	0	5652	1281	45	2	890	2	FAM71A	1	212799107	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10682	212799107	36451514	91	63797										
KCTD3	0	genome.wustl.edu	37	chr1	215792602	215792602	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtccagcaacttccgtagttCagcatagccacttacgagaa	8	12	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	215792602	215792602	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	nonsense	c.1855	p.Q619*	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	77	0	0	49	12	19.67	-	-	-	T	215792602	C	T	215792602	4	4	727	1	0	0	0	0	0	1	0	0	8164	827	29	2	1921	2	KCTD3	1	215792602	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2993495	215792602	33458019	92	63798										
EPRS	0	genome.wustl.edu	37	chr1	220170425	220170425	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaatacttgctgaggaattaGaagaaatattctgtcctatt	8	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	220170425	220170425	G	A	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.2441	p.S814F	0.000	NULL	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	100	0	0	104	19	15.08	-	-	-	A	220170425	G	A	220170425	3	1	727	1	0	0	0	0	1	0	0	0	5228	942	33	2	2157	2	EPRS	1	220170425	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4377823	220170425	29080196	93	63799										
TAF1A	0	genome.wustl.edu	37	chr1	222750952	222750952	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcatctttaagcattccatGatgcagaaggtataatgcat	8	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	222750952	222750952	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	69_37n	-1	known	missense	c.439	p.H147Y	1.000	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498	87	0	0	110	17	13.39	-	-	-	A	222750952	G	A	222750952	3	1	727	1	0	0	0	0	1	0	0	0	15611	1290	45	2	941	2	TAF1A	1	222750952	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2580527	222750952	26499669	94	63800										
DISP1	0	genome.wustl.edu	37	chr1	223116391	223116391	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagacaaccaaagaatgcctCagatgttaccccaatgctgc	7	12	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	223116391	223116391	C	G	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.226	p.Q76E	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	126	0	0	93	18	16.22	-	-	-	G	223116391	C	G	223116391	3	3	727	1	0	0	0	0	1	0	0	0	4575	827	29	2	228	2	DISP1	1	223116391	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	365439	223116391	26134230	95	63801										
CNIH4	0	genome.wustl.edu	37	chr1	224548252	224548252	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taatgctagatcatgttgctCaaaattaaacaaggtaagac	7	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	224548252	224548252	C	T	SNP	CNIH4	ENST00000465271	human	ensembl	69_37n	1	known	missense	c.125	p.S42L	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH4	HGNC	ENSG00000143771	56	0	0	63	16	20.25	-	-	-	T	224548252	C	T	224548252	3	4	727	1	0	0	0	0	1	0	0	0	3635	838	29	2	131	2	CNIH4	1	224548252	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1431861	224548252	24702369	96	63802										
CDC42BPA	0	genome.wustl.edu	37	chr1	227307612	227307612	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctcacagcattagcttcttCaagttgctgttccaaatgac	6	12	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	227307612	227307612	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514K	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	125	0	0	120	33	21.57	-	-	-	T	227307612	C	T	227307612	3	4	727	1	0	0	0	0	1	0	0	0	3101	835	29	2	3719	2	CDC42BPA	1	227307612	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2759360	227307612	21943009	97	63803										
HIST3H2BB	0	genome.wustl.edu	37	chr1	228646044	228646044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccttcgtcaatgacatcttcGagcgcatcgccagcgaggcc	10	15	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	228646044	228646044	G	A	SNP	HIST3H2BB	ENST00000369160	human	ensembl	69_37n	1	known	missense	c.214	p.E72K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST3H2BB	HGNC	ENSG00000196890	101	0	0	84	19	18.45	-	-	-	A	228646044	G	A	228646044	3	1	727	1	0	0	0	0	1	0	0	0	7234	1059	37	1	216	1	HIST3H2BB	1	228646044	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1338432	228646044	20604577	98	63804										
C1orf198	0	genome.wustl.edu	37	chr1	230979431	230979431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cggcctcaggcccctcccctCgggaccgctcagcattgatc	10	19	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	230979431	230979431	C	T	SNP	C1orf198	ENST00000366663	human	ensembl	69_37n	-1	known	missense	c.596	p.R199Q	1.000	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280	36	0	0	36	10	21.74	-	-	-	T	230979431	C	T	230979431	3	4	727	1	0	0	0	0	1	0	0	0	2045	884	31	1	395	1	C1orf198	1	230979431	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2333387	230979431	18271190	99	63805										
C1orf131	0	genome.wustl.edu	37	chr1	231376866	231376866	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcctgcgacattgtggggtCagccgaggaatcaaccctca	11	13	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	231376866	231376866	C	T	SNP	C1orf131	ENST00000366649	human	ensembl	69_37n	-1	known	missense	c.22	p.D8N	0.002	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633	26	0	0	23	8	25.81	-	-	-	T	231376866	C	T	231376866	3	4	727	1	0	0	0	0	1	0	0	0	2017	826	29	2	887	2	C1orf131	1	231376866	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	397435	231376866	17873755	100	63806										
PCNXL2	0	genome.wustl.edu	37	chr1	233136146	233136146	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgccgcagggtgagcagctCttccttgttggacagcactg	14	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	233136146	233136146	C	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	nonsense	c.5233	p.E1745*	1.000	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	31	0	0	32	6	15.79	-	-	-	A	233136146	C	A	233136146	4	1	727	1	0	0	0	0	0	1	0	0	11665	922	32	2	1200	2	PCNXL2	1	233136146	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1759280	233136146	16114475	101	63807										
TARBP1	0	genome.wustl.edu	37	chr1	234528352	234528352	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcagttatagccctgcttgGagtaaattagagttaaaaaa	8	5	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	234528352	234528352	G	C	SNP	TARBP1	ENST00000471918	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TARBP1	HGNC	ENSG00000059588	47	0	0	65	12	15.58	-	-	-	C	234528352	G	C	234528352	1	2	727	0	1	0	0	0	0	0	0	0	15647	1189	41	2		2	TARBP1	1	234528352	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1392206	234528352	14722269	102	63808										
LYST	0	genome.wustl.edu	37	chr1	235969147	235969147	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatactttgaagtgaggtctCactttcttgacttgtaaata	7	6	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	235969147	235969147	C	T	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.3289	p.E1097K	0.997	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	25	0	0	52	16	23.53	-	-	-	T	235969147	C	T	235969147	3	4	727	1	0	0	0	0	1	0	0	0	9195	835	29	2	8308	2	LYST	1	235969147	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1440795	235969147	13281474	103	63809										
RYR2	0	genome.wustl.edu	37	chr1	237586541	237586541	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacagcatttaccttccggtCttccaaggtgagacagaaaa	8	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	237586541	237586541	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.992	p.S331F	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	32	0	0	49	10	16.95	-	-	-	T	237586541	C	T	237586541	3	4	727	1	0	0	0	0	1	0	0	0	13855	913	32	2	1044	2	RYR2	1	237586541	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1617394	237586541	11664080	104	63810										
RYR2	0	genome.wustl.edu	37	chr1	237972300	237972300	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaataaaagtgaagatggtGatacaccagatatgaaatgt	9	4	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	237972300	237972300	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.14416	p.D4806N	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	95	0	0	91	31	25.41	-	-	-	A	237972300	G	A	237972300	3	1	727	1	0	0	0	0	1	0	0	0	13855	1290	45	2	14796	2	RYR2	1	237972300	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	385759	237972300	11278321	105	63811										
RYR2	0	genome.wustl.edu	37	chr1	237994830	237994830	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtaggttttttctgatgtatCttataaacaaagatgaaaca	7	4	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	237994830	237994830	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.14791	p.L4931V	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	126	0	0	137	30	17.96	-	-	-	G	237994830	C	G	237994830	3	3	727	1	0	0	0	0	1	0	0	0	13855	913	32	2	15187	2	RYR2	1	237994830	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	22530	237994830	11255791	106	63812										
ADSS	0	genome.wustl.edu	37	chr1	244586160	244586160	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagtttttgtaattcaccttCaatgtctatttccaaagtgg	7	7	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	244586160	244586160	C	G	SNP	ADSS	ENST00000366535	human	ensembl	69_37n	-1	known	missense	c.640	p.E214Q	1.000	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687	182	0	0	176	44	20	-	-	-	G	244586160	C	G	244586160	3	3	727	1	0	0	0	0	1	0	0	0	347	835	29	2	758	2	ADSS	1	244586160	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6591330	244586160	4664461	107	63813										
HNRNPU	0	genome.wustl.edu	37	chr1	245019359	245019359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggaagagcctttttgctttCttccttatattgctccaaga	7	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	245019359	245019359	C	G	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.2014	p.E672Q	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	156	0	0	155	48	23.65	-	-	-	G	245019359	C	G	245019359	3	3	727	1	0	0	0	0	1	0	0	0	7324	922	32	2	479	2	HNRNPU	1	245019359	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	433199	245019359	4231262	108	63814										
HNRNPU	0	genome.wustl.edu	37	chr1	245020994	245020994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccaggtagtttttccagctCctggcaagccaatcatcatc	7	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	245020994	245020994	C	T	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.1520	p.G507E	1.000	pfam_Zeta_toxin_domain	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	93	0	0	82	21	20.39	-	-	-	T	245020994	C	T	245020994	3	4	727	1	0	0	0	0	1	0	0	0	7324	855	30	2	985	2	HNRNPU	1	245020994	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1635	245020994	4229627	109	63815										
ZNF124	0	genome.wustl.edu	37	chr1	247320233	247320233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catgcacacataaggtttctCtccagtgtgagttctttcat	7	10	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	247320233	247320233	C	G	SNP	ZNF124	ENST00000543802	human	ensembl	69_37n	-1	known	missense	c.691	p.E231Q	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418	73	0	0	83	20	19.42	-	-	-	G	247320233	C	G	247320233	3	3	727	1	0	0	0	0	1	0	0	0	17816	922	32	2	368	2	ZNF124	1	247320233	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2299239	247320233	1930388	110	63816										
NLRP3	0	genome.wustl.edu	37	chr1	247597529	247597529	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgacttcggaatcagacttCtgtgtgtgggactgaagcac	13	8	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	247597529	247597529	C	T	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	silent	c.2452	p.L818	0.088	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	71	0	0	40	15	27.27	-	-	-	T	247597529	C	T	247597529	2	4	727	1	0	0	0	0	0	0	0	1	10550	912	32	2		2	NLRP3	1	247597529	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	277296	247597529	1653092	111	63817										
OR2W3	0	genome.wustl.edu	37	chr1	248058939	248058939	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catttcatcctactgggattCtctgaccgaccccatctgga	7	14	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	1	248058939	248058939	C	T	SNP	OR2W3	ENST00000360358	human	ensembl	69_37n	1	known	silent	c.51	p.F17	0.433	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243	55	0	0	25	9	26.47	-	-	-	T	248058939	C	T	248058939	2	4	727	1	0	0	0	0	0	0	0	1	11106	912	32	2		2	OR2W3	1	248058939	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	461410	248058939	1191682	112	63818										
MYT1L	0	genome.wustl.edu	37	chr2	1926145	1926145	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgtctcggagactggtcctCatatgacctcatattgtccc	8	12	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	1926145	1926145	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1396	p.E466Q	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	124	0	0	77	12	13.48	-	-	-	G	1926145	C	G	1926145	3	3	727	1	0	0	0	0	1	0	0	0	10179	835	29	2	2222	2	MYT1L	2	1926145	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		1926145	241273228	113	63819										
NBAS	0	genome.wustl.edu	37	chr2	15534412	15534412	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcctcttctgagctagattGagtgtttttaacaaatgaaa	8	6	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	15534412	15534412	G	C	SNP	NBAS	ENST00000429842	human	ensembl	69_37n	-1	novel	nonsense	c.488	p.S163*	1.000	pfam_Sec39	pfam_Sec39	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBAS	HGNC	ENSG00000151779	103	0	0	58	19	24.68	-	-	-	C	15534412	G	C	15534412	4	2	727	1	0	0	0	0	0	1	0	0	10258	1299	45	2	4019	2	NBAS	2	15534412	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	13608267	15534412	227664961	114	63820										
APOB	0	genome.wustl.edu	37	chr2	21238074	21238074	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccacagggaaattggaagtCatttttttggtatctacatt	8	6	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	21238074	21238074	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.3567	p.M1189I	0.001	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	53	0	0	50	8	13.33	-	-	-	T	21238074	C	T	21238074	3	4	727	1	0	0	0	0	1	0	0	0	787	826	29	2	10152	2	APOB	2	21238074	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5703662	21238074	221961299	115	63821										
TMEM214	0	genome.wustl.edu	37	chr2	27260482	27260482	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgaaagtgctggcatttgGagcaaagccggattccaccc	11	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	27260482	27260482	G	C	SNP	TMEM214	ENST00000238788	human	ensembl	69_37n	1	known	missense	c.1064	p.G355A	1.000	pfam_DUF2359_TMEM214	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	106	0	0	48	10	17.24	-	-	-	C	27260482	G	C	27260482	3	2	727	1	0	0	0	0	1	0	0	0	16232	1174	41	2	1098	2	TMEM214	2	27260482	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6022408	27260482	215938891	116	63822										
SNX17	0	genome.wustl.edu	37	chr2	27599023	27599023	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atggttgatgaactgatggtGaagaaatctggcggcagtat	14	4	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	27599023	27599023	G	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	silent	c.1155	p.V385	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	34	0	0	32	4	11.11	-	-	-	A	27599023	G	A	27599023	2	1	727	1	0	0	0	0	0	0	0	1	14977	1277	45	2		2	SNX17	2	27599023	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	338541	27599023	215600350	117	63823										
SLC4A1AP	0	genome.wustl.edu	37	chr2	27917512	27917512	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgatctaggtcaaagtggaGatggcagaacccatcttaat	10	8	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	27917512	27917512	G	C	SNP	SLC4A1AP	ENST00000326019	human	ensembl	69_37n	1	known	missense	c.2353	p.D785H	1.000	NULL	pfam_FHA_dom,pfam_Ds-RNA-bd,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798	125	0	0	72	25	25.77	-	-	-	C	27917512	G	C	27917512	3	2	727	1	0	0	0	0	1	0	0	0	14742	942	33	2	2407	2	SLC4A1AP	2	27917512	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	318489	27917512	215281861	118	63824										
ALK	0	genome.wustl.edu	37	chr2	29519845	29519845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccagaccatcctgccttgctCcttcccggttttgttctcca	6	17	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	29519845	29519845	C	G	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.1726	p.E576Q	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,pfscan_MAM_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	117	0	0	39	12	23.53	-	-	-	G	29519845	C	G	29519845	3	3	727	1	0	0	0	0	1	0	0	0	525	864	30	2	3220	2	ALK	2	29519845	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1602333	29519845	213679528	119	63825										
NLRC4	0	genome.wustl.edu	37	chr2	32461373	32461373	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtaattttctgataaatcaaGaatgctcagtttgaccaaat	6	6	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	32461373	32461373	G	C	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.2557	p.L853V	0.998	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	156	0	0	108	39	26.53	-	-	-	C	32461373	G	C	32461373	3	2	727	1	0	0	0	0	1	0	0	0	10541	942	33	2	529	2	NLRC4	2	32461373	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2941528	32461373	210738000	120	63826										
NLRC4	0	genome.wustl.edu	37	chr2	32475918	32475918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaagtgatgaccacaaagaGaggggtcttcatgagattcc	11	8	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	32475918	32475918	G	C	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	missense	c.1015	p.L339V	1.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	52	0	0	40	12	22.22	-	-	-	C	32475918	G	C	32475918	3	2	727	1	0	0	0	0	1	0	0	0	10541	942	33	2	2083	2	NLRC4	2	32475918	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14545	32475918	210723455	121	63827										
FAM98A	0	genome.wustl.edu	37	chr2	33817255	33817255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagtagcccactcacctcaaGctggaattcttcagcttcac	6	14	5	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	33817255	33817255	G	T	SNP	FAM98A	ENST00000238823	human	ensembl	69_37n	-1	known	missense	c.229	p.L77I	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812	51	0	0	25	9	26.47	-	-	-	T	33817255	G	T	33817255	3	4	727	1	0	0	0	0	1	0	0	0	5702	971	34	4	1351	4	FAM98A	2	33817255	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1341337	33817255	209382118	122	63828										
VIT	0	genome.wustl.edu	37	chr2	37041381	37041381	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcccaagaggagctagaagtCattgccactcaccccgccag	10	15	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	37041381	37041381	C	G	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	silent	c.1959	p.V653	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	55	0	0	21	6	22.22	-	-	-	G	37041381	C	G	37041381	2	3	727	1	0	0	0	0	0	0	0	1	17268	813	29	2		2	VIT	2	37041381	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3224126	37041381	206157992	123	63829										
HNRPLL	0	genome.wustl.edu	37	chr2	38829676	38829676	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctcggccgagtagtcgatCtccccctcctcggtcttgag	10	16	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	38829676	38829676	C	T	SNP	HNRPLL	ENST00000449105	human	ensembl	69_37n	-1	known	silent	c.93	p.E31	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRPLL	HGNC	ENSG00000143889	29	0	0	8	5	38.46	-	-	-	T	38829676	C	T	38829676	2	4	727	1	0	0	0	0	0	0	0	1	7328	912	32	2		2	HNRPLL	2	38829676	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1788295	38829676	204369697	124	63830										
HNRPLL	0	genome.wustl.edu	37	chr2	38829687	38829687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtagtcgatctccccctcctCggtcttgagacgcttggcct	10	15	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	38829687	38829687	C	T	SNP	HNRPLL	ENST00000449105	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRPLL	HGNC	ENSG00000143889	28	0	0	9	5	35.71	-	-	-	T	38829687	C	T	38829687	3	4	727	1	0	0	0	0	1	0	0	0	7328	893	31	1	1598	1	HNRPLL	2	38829687	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	11	38829687	204369686	125	63831										
ATP6V1E2	0	genome.wustl.edu	37	chr2	46739730	46739730	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgcacgaggcgtcctttctCaatgttaaactcttcctcag	7	12	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	46739730	46739730	C	G	SNP	ATP6V1E2	ENST00000306448	human	ensembl	69_37n	-1	known	missense	c.121	p.E41Q	1.000	pfam_ATPase_V1/A1-cplx_esu	pfam_ATPase_V1/A1-cplx_esu	-	no_errors	ATP6V1E2	HGNC	ENSG00000250565	116	0	0	69	33	32.35	-	-	-	G	46739730	C	G	46739730	3	3	727	1	0	0	0	0	1	0	0	0	1188	835	29	2	563	2	ATP6V1E2	2	46739730	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7910043	46739730	196459643	126	63832										
CALM2	0	genome.wustl.edu	37	chr2	47389797	47389797	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatagtgaaaaagcttctttGaattctgtttgaaagaaaga	8	3	2	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	47389797	47389797	G	C	SNP	CALM2	ENST00000272298	human	ensembl	69_37n	-1	known	missense	c.39	p.F13L	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	CALM2	HGNC	ENSG00000143933	80	0	0	80	16	16.49	-	-	-	C	47389797	G	C	47389797	3	2	727	1	0	0	0	0	1	0	0	0	2610	1281	45	2	426	2	CALM2	2	47389797	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	650067	47389797	195809576	127	63833										
LHCGR	0	genome.wustl.edu	37	chr2	48915041	48915041	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagcaaaagaaagaaatctCtttggaatgtcttagtgaat	8	5	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	48915041	48915041	C	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.1895	p.R632T	1.000	prints_Gphrmn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	25	0	0	29	7	19.44	-	-	-	G	48915041	C	G	48915041	3	3	727	1	0	0	0	0	1	0	0	0	8817	913	32	2	208	2	LHCGR	2	48915041	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1525244	48915041	194284332	128	63834										
PNPT1	0	genome.wustl.edu	37	chr2	55900055	55900055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatatttcacaatctctggcGaaggggtaaataacttctga	8	7	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	55900055	55900055	G	A	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.839	p.S280L	0.832	superfamily_PNPase_PH_RNA-bd_bac/org-type,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	94	0	0	87	32	26.89	-	-	-	A	55900055	G	A	55900055	3	1	727	1	0	0	0	0	1	0	0	0	12247	1059	37	1	1592	1	PNPT1	2	55900055	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6985014	55900055	187299318	129	63835										
USP34	0	genome.wustl.edu	37	chr2	61633109	61633109	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctgcttgattactctcatCttgccacgtggaatctatgt	7	10	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	61633109	61633109	C	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.286	p.D96N	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	115	0	0	88	33	27.27	-	-	-	T	61633109	C	T	61633109	3	4	727	1	0	0	0	0	1	0	0	0	17162	913	32	2	10666	2	USP34	2	61633109	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5733054	61633109	181566264	130	63836										
UGP2	0	genome.wustl.edu	37	chr2	64085017	64085017	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatttcatagatttttgcaaGaaaaggggccttctgtggat	10	5	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	64085017	64085017	G	T	SNP	UGP2	ENST00000337130	human	ensembl	69_37n	1	known	nonsense	c.202	p.E68*	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764	70	0	0	47	16	25.4	-	-	-	T	64085017	G	T	64085017	4	4	727	1	0	0	0	0	0	1	0	0	17040	943	33	2	212	2	UGP2	2	64085017	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2451908	64085017	179114356	131	63837										
PROKR1	0	genome.wustl.edu	37	chr2	68873407	68873407	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtctctctctatgtctccAccaatgccctgctggccatc	6	17	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	68873407	68873407	A	C	SNP	PROKR1	ENST00000303786	human	ensembl	69_37n	1	known	missense	c.454	p.T152P	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PROKR1	HGNC	ENSG00000169618	59	0	0	36	5	11.63	-	-	-	C	68873407	A	C	68873407	3	2	727	1	0	0	0	0	1	0	0	0	12633	159	6	5	456	5	PROKR1	2	68873407	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	4788390	68873407	174325966	132	63838										
ADD2	0	genome.wustl.edu	37	chr2	70917942	70917942	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caggtgggtccaaggcacttCtgcaggttgatccgatcggc	14	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	70917942	70917942	C	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.825	p.Q275H	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	56	0	0	31	9	22.5	-	-	-	A	70917942	C	A	70917942	3	1	727	1	0	0	0	0	1	0	0	0	305	912	32	2	1568	2	ADD2	2	70917942	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2044535	70917942	172281431	133	63839										
ZNF638	0	genome.wustl.edu	37	chr2	71650077	71650077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaactttggtacagcaggaaGagccttgtgaggaagaagct	13	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	71650077	71650077	G	C	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	1	known	missense	c.3433	p.E1145Q	0.992	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	56	0	0	37	8	17.78	-	-	-	C	71650077	G	C	71650077	3	2	727	1	0	0	0	0	1	0	0	0	18151	943	33	2	3515	2	ZNF638	2	71650077	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	732135	71650077	171549296	134	63840										
MTHFD2	0	genome.wustl.edu	37	chr2	74432940	74432940	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcaacaaacggccacacctGagtgtgatcctggttggcga	13	11	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	74432940	74432940	G	C	SNP	MTHFD2	ENST00000394053	human	ensembl	69_37n	1	known	silent	c.210	p.L70	1.000	pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD2	HGNC	ENSG00000065911	55	0	0	31	11	26.19	-	-	-	C	74432940	G	C	74432940	2	2	727	1	0	0	0	0	0	0	0	1	10001	1277	45	2		2	MTHFD2	2	74432940	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2782863	74432940	168766433	135	63841										
SLC4A5	0	genome.wustl.edu	37	chr2	74483038	74483038	+	Nonsense_Mutation	SNP	T	T	A													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctgagtccttggggatctTcttcatgaatttgtttttcc							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	74483038	74483038	T	A	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	nonsense	c.889	p.K297*	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	39	0	0	27	9	25	-	-	-	A	74483038	T	A	74483038	4	1	727	1	0	0	0	0	0	1	0	0	14746	1792	62	5	2600	5	SLC4A5	2	74483038	Nonsense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	50098	74483038	168716335	136	63842	467	2								
SLC4A5	0	genome.wustl.edu	37	chr2	74483039	74483039	+	Silent	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgagtccttggggatcttCttcatgaatttgtttttccg							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	74483039	74483039	C	T	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	silent	c.888	p.K296	1.000	pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	39	0	0	27	9	25	-	-	-	T	74483039	C	T	74483039	2	4	727	1	0	0	0	0	0	0	0	1	14746	912	32	2		2	SLC4A5	2	74483039	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1	74483039	168716334	137	63843	467	2								
MRPL53	0	genome.wustl.edu	37	chr2	74699267	74699267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagcgaccagtatcagcgccCggcttgtccccgctgcccgc	11	19	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	74699267	74699267	C	T	SNP	MRPL53	ENST00000409710	human	ensembl	69_37n	-1	novel	missense	c.205	p.G69R	0.000	NULL	NULL	-	no_errors	MRPL53	HGNC	ENSG00000204822	33	0	0	17	7	29.17	-	-	-	T	74699267	C	T	74699267	3	4	727	1	0	0	0	0	1	0	0	0	9889	639	23	1	24	1	MRPL53	2	74699267	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	216228	74699267	168500106	138	63844										
PTCD3	0	genome.wustl.edu	37	chr2	86358205	86358206	+	Frame_Shift_Ins	INS	-	-	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aactttgattttcagataagINSttttttcagtcagccatgag							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	86358205	86358206	-	T	INS	PTCD3	ENST00000254630	human	ensembl	69_37n	1	known	frame_shift_ins	c.1242_1243	p.Q416fs	0.982:1.000	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	114	0	0	111	25	18.38	-	-	-	T	86358206	-	T	86358205	7	5	727	1	0	1	1	0	0	0	0	0	12809	1020	36	0	1304	0	PTCD3	2	86358205	Frame_Shift_Ins	INS	-	TCGA-D8-A27G-01A-11D-A16D-09	11658938	86358205	156841168	139	63845										
CD8A	0	genome.wustl.edu	37	chr2	87015674	87015674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggggacatttgcaaacacgtCttcggttccctggataagga	12	9	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	87015674	87015674	C	T	SNP	CD8A	ENST00000538832	human	ensembl	69_37n	-1	known	missense	c.758	p.R253K	0.767	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8A	HGNC	ENSG00000153563	39	0	0	30	14	31.82	-	-	-	T	87015674	C	T	87015674	3	4	727	1	0	0	0	0	1	0	0	0	3073	913	32	2	80	2	CD8A	2	87015674	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	657469	87015674	156183699	140	63846										
NCAPH	0	genome.wustl.edu	37	chr2	97025883	97025883	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgtgttcactctgcagaaGatgctccttcccaatcagaa	7	12	4	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	97025883	97025883	G	T	SNP	NCAPH	ENST00000240423	human	ensembl	69_37n	1	known	missense	c.1360	p.D454Y	0.191	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152	40	0	0	27	18	40	-	-	-	T	97025883	G	T	97025883	3	4	727	1	0	0	0	0	1	0	0	0	10281	942	33	2	1402	2	NCAPH	2	97025883	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10010209	97025883	146173490	141	63847										
LONRF2	0	genome.wustl.edu	37	chr2	100911929	100911929	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atttcttcatcataaattctCttcctatcagacaattcatc	1	11	6	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	100911929	100911929	C	G	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	missense	c.1563	p.K521N	1.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	125	0	0	63	19	23.17	-	-	-	G	100911929	C	G	100911929	3	3	727	1	0	0	0	0	1	0	0	0	8961	912	32	2	721	2	LONRF2	2	100911929	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3886046	100911929	142287444	142	63848										
TBC1D8	0	genome.wustl.edu	37	chr2	101670693	101670693	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggtgaccagcttctccgcctCggggaagttgaacctggcct	13	13	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	101670693	101670693	C	A	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	nonsense	c.508	p.E170*	0.968	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	53	0	0	19	10	34.48	-	-	-	A	101670693	C	A	101670693	4	1	727	1	0	0	0	0	0	1	0	0	15720	893	31	3	3027	3	TBC1D8	2	101670693	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	758764	101670693	141528680	143	63849										
MAP4K4	0	genome.wustl.edu	37	chr2	102472451	102472451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttacgtagcaacaaaggagaGagcgggaagctagaaggcag	15	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	102472451	102472451	G	C	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.1246	p.E416Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	84	0	0	70	23	24.73	-	-	-	C	102472451	G	C	102472451	3	2	727	1	0	0	0	0	1	0	0	0	9333	943	33	2	1296	2	MAP4K4	2	102472451	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	801758	102472451	140726922	144	63850										
SLC5A7	0	genome.wustl.edu	37	chr2	108618395	108618395	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtcacatcctgcagtcgcaGacatcgggttcactgctgtg	11	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	108618395	108618395	G	A	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	missense	c.640	p.D214N	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	135	0	0	74	33	30.84	-	-	-	A	108618395	G	A	108618395	3	1	727	1	0	0	0	0	1	0	0	0	14759	942	33	2	658	2	SLC5A7	2	108618395	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6145944	108618395	134580978	145	63851										
SLC5A7	0	genome.wustl.edu	37	chr2	108626921	108626921	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcttcctgagaataactggAggggagccatatctgtatct	10	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	108626921	108626921	A	G	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	silent	c.1347	p.G449	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	136	0	0	77	23	23	-	-	-	G	108626921	A	G	108626921	2	3	727	1	0	0	0	0	0	0	0	1	14759	291	11	5		5	SLC5A7	2	108626921	Silent	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	8526	108626921	134572452	146	63852										
SEPT10	0	genome.wustl.edu	37	chr2	110310693	110310693	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcttctttcaatatggcttCtttctcctttactcgctgca	5	12	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	110310693	110310693	C	T	SNP	SEPT10	ENST00000397712	human	ensembl	69_37n	-1	known	missense	c.1132	p.E378K	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT10	HGNC	ENSG00000186522	204	0	0	145	41	21.58	-	-	-	T	110310693	C	T	110310693	3	4	727	1	0	0	0	0	1	0	0	0	14148	922	32	2	244	2	SEPT10	2	110310693	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1683772	110310693	132888680	147	63853										
ZC3H6	0	genome.wustl.edu	37	chr2	113057472	113057472	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaatagacgatgcaggatttGaagaaatacaagaaaaagaa	9	3	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	113057472	113057472	G	A	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	46	0	0	45	13	22.41	-	-	-	A	113057472	G	A	113057472	3	1	727	1	0	0	0	0	1	0	0	0	17667	1291	45	2	85	2	ZC3H6	2	113057472	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2746779	113057472	130141901	148	63854										
CNTNAP5	0	genome.wustl.edu	37	chr2	125192094	125192094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgactttgatggccgaagctCacttctgtacaggttcaatc	9	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	125192094	125192094	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	missense	c.563	p.S188L	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	81	0	0	53	29	35.37	-	-	-	T	125192094	C	T	125192094	3	4	727	1	0	0	0	0	1	0	0	0	3680	838	29	2	581	2	CNTNAP5	2	125192094	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	12134622	125192094	118007279	149	63855										
IWS1	0	genome.wustl.edu	37	chr2	128261086	128261086	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggtcttctctcttttgcctGacttgtctgatacagcatca	7	11	5	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	128261086	128261086	G	T	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	nonsense	c.1286	p.S429*	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	128	0	0	80	21	20.79	-	-	-	T	128261086	G	T	128261086	4	4	727	1	0	0	0	0	0	1	0	0	7985	1294	45	2	1217	2	IWS1	2	128261086	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3068992	128261086	114938287	150	63856										
UGGT1	0	genome.wustl.edu	37	chr2	128939725	128939725	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgtacgaacagatctgaaaGagttaagagatttcaatttg	9	4	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	128939725	128939725	G	C	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.4105	p.E1369Q	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	67	0	0	62	18	22.5	-	-	-	C	128939725	G	C	128939725	3	2	727	1	0	0	0	0	1	0	0	0	17038	943	33	2	4251	2	UGGT1	2	128939725	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	678639	128939725	114259648	151	63857										
ARHGEF4	0	genome.wustl.edu	37	chr2	131801929	131801929	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggctggacatggacggcctgGaggtggtggacctggaggac	20	8	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	131801929	131801929	G	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	1	known	nonsense	c.1657	p.E553*	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	31	0	0	14	5	26.32	-	-	-	T	131801929	G	T	131801929	4	4	727	1	0	0	0	0	0	1	0	0	910	1175	41	2	1695	2	ARHGEF4	2	131801929	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2862204	131801929	111397444	152	63858										
ZRANB3	0	genome.wustl.edu	37	chr2	135965152	135965152	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtttcaaatactttggctCtcaggtaactgttattagat	7	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	135965152	135965152	C	T	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.2861	p.R954K	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	85	0	0	71	24	25.26	-	-	-	T	135965152	C	T	135965152	3	4	727	1	0	0	0	0	1	0	0	0	18317	913	32	2	390	2	ZRANB3	2	135965152	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4163223	135965152	107234221	153	63859										
KYNU	0	genome.wustl.edu	37	chr2	143799654	143799654	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatggcattcgagtggctccAgttcctctctataattcttt	7	10	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	143799654	143799654	A	C	SNP	KYNU	ENST00000264170	human	ensembl	69_37n	1	known	silent	c.1311	p.P437	0.676	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	139	1	0.71	86	17	16.5	-	-	-	C	143799654	A	C	143799654	2	2	727	1	0	0	0	0	0	0	0	1	8641	175	7	5		5	KYNU	2	143799654	Silent	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	7834502	143799654	99399719	154	63860										
MBD5	0	genome.wustl.edu	37	chr2	149227744	149227744	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cattttacagatcccagtatGaactctagtgttcttcagaa	6	9	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	149227744	149227744	G	T	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	missense	c.2232	p.M744I	0.998	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	79	0	0	48	15	23.81	-	-	-	T	149227744	G	T	149227744	3	4	727	1	0	0	0	0	1	0	0	0	9418	1290	45	2	2246	2	MBD5	2	149227744	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5428090	149227744	93971629	155	63861										
NEB	0	genome.wustl.edu	37	chr2	152409956	152409956	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttggcatggaggatttcagGagtgtcccagacgtagcaac	13	9	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	152409956	152409956	G	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.19687	p.P6563A	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	88	0	0	69	21	23.33	-	-	-	C	152409956	G	C	152409956	3	2	727	1	0	0	0	0	1	0	0	0	10374	1174	41	2	6223	2	NEB	2	152409956	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3182212	152409956	90789417	156	63862										
PRPF40A	0	genome.wustl.edu	37	chr2	153533208	153533208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacaacagcagctgctgcttCggcagcagccatggtgctca	11	13	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	153533208	153533208	C	T	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	missense	c.742	p.E248K	1.000	prints_Antifreeze_1	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	178	0	0	66	33	33.33	-	-	-	T	153533208	C	T	153533208	3	4	727	1	0	0	0	0	1	0	0	0	12652	893	31	1	2118	1	PRPF40A	2	153533208	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1123252	153533208	89666165	157	63863										
ACVR1C	0	genome.wustl.edu	37	chr2	158412650	158412650	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcataaatcagatctttcaGagtttttccagcatttacca	4	9	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	158412650	158412650	G	A	SNP	ACVR1C	ENST00000243349	human	ensembl	69_37n	-1	known	silent	c.499	p.L167	0.957	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612	125	0	0	74	32	30.19	-	-	-	A	158412650	G	A	158412650	2	1	727	1	0	0	0	0	0	0	0	1	222	933	33	2		2	ACVR1C	2	158412650	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4879442	158412650	84786723	158	63864										
SCN1A	0	genome.wustl.edu	37	chr2	166904221	166904221	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgaaggtatcaaagcttgtGtagccataattgggatttct	10	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	166904221	166904221	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	nonsense	c.1086	p.Y362*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	90	0	0	49	19	27.94	-	-	-	T	166904221	G	T	166904221	4	4	727	1	0	0	0	0	0	1	0	0	14002	1372	48	4	5019	4	SCN1A	2	166904221	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8491571	166904221	76295152	159	63865										
SCN9A	0	genome.wustl.edu	37	chr2	167129104	167129104	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attttatctttttccttgagGaaattgtgacctttgctcat	6	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	167129104	167129104	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.3159	p.F1053	0.670	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	153	0	0	95	46	32.62	-	-	-	A	167129104	G	A	167129104	2	1	727	1	0	0	0	0	0	0	0	1	14013	1165	41	2		2	SCN9A	2	167129104	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	224883	167129104	76070269	160	63866										
XIRP2	0	genome.wustl.edu	37	chr2	168102294	168102294	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acccacactatggatgaactGagaggagaagggttagaata	12	6	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	168102294	168102294	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.4392	p.L1464	0.994	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	46	0	0	36	14	28	-	-	-	A	168102294	G	A	168102294	2	1	727	1	0	0	0	0	0	0	0	1	17527	1277	45	2		2	XIRP2	2	168102294	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	973190	168102294	75097079	161	63867										
LRP2	0	genome.wustl.edu	37	chr2	169995791	169995791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggcagagcaggcaaaaggGagccggtccttctatagtgg	16	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	169995791	169995791	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.13358	p.S4453C	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	32	0	0	32	13	28.89	-	-	-	C	169995791	G	C	169995791	3	2	727	1	0	0	0	0	1	0	0	0	9022	1174	41	2	633	2	LRP2	2	169995791	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1893497	169995791	73203582	162	63868										
HOXD4	0	genome.wustl.edu	37	chr2	177016487	177016487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tactacggcggcggcgcgcaGggcgcagacttccagccccc	14	17	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	177016487	177016487	G	C	SNP	HOXD4	ENST00000306324	human	ensembl	69_37n	1	known	missense	c.126	p.Q42H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia,pfscan_Homeodomain	-	no_errors	HOXD4	HGNC	ENSG00000170166	8	0	0	3	4	57.14	-	-	-	C	177016487	G	C	177016487	3	2	727	1	0	0	0	0	1	0	0	0	7375	991	35	4	128	4	HOXD4	2	177016487	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7020696	177016487	66182886	163	63869										
DFNB59	0	genome.wustl.edu	37	chr2	179320772	179320772	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccacagcttgatacgtcagtCaaggagcagcagaaaggcag	12	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	179320772	179320772	C	G	SNP	DFNB59	ENST00000375129	human	ensembl	69_37n	1	known	nonsense	c.443	p.S148*	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311	36	0	0	31	8	20.51	-	-	-	G	179320772	C	G	179320772	4	3	727	1	0	0	0	0	0	1	0	0	4492	838	29	2	453	2	DFNB59	2	179320772	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2304285	179320772	63878601	164	63870										
TTN	0	genome.wustl.edu	37	chr2	179558664	179558664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatacctgtgactgacacctCctcctctgtgtgagaagcaa	8	12	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	179558664	179558664	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.27766	p.E9256K	0.987	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	127	0	0	86	31	26.5	-	-	-	T	179558664	C	T	179558664	3	4	727	1	0	0	0	0	1	0	0	0	16832	864	30	2	73011	2	TTN	2	179558664	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	237892	179558664	63640709	165	63871										
TTN	0	genome.wustl.edu	37	chr2	179612488	179612488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tattttgagaaaaactagttTctatcatttctccttctaaa	3	7	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	179612488	179612488	T	C	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.14639	p.E4880G	0.954	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	38	0	0	31	14	29.79	-	-	-	C	179612488	T	C	179612488	3	2	727	1	0	0	0	0	1	0	0	0	16832	1783	62	5	95658	5	TTN	2	179612488	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	53824	179612488	63586885	166	63872										
TTN	0	genome.wustl.edu	37	chr2	179656840	179656840	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtttcttagtaatttcttCagaaattctagtttcttgtt	5	6	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	179656840	179656840	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.1621	p.E541K	1.000	pfam_Titin_Z,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	158	0	0	151	53	25.98	-	-	-	T	179656840	C	T	179656840	3	4	727	1	0	0	0	0	1	0	0	0	16832	835	29	2	109779	2	TTN	2	179656840	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	44352	179656840	63542533	167	63873										
NEUROD1	0	genome.wustl.edu	37	chr2	182543321	182543321	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggcgagccttagtcatcttCttctttttggggccgcgtct	11	11	5	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	182543321	182543321	C	T	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	silent	c.267	p.K89	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	159	0	0	98	13	11.61	-	-	-	T	182543321	C	T	182543321	2	4	727	1	0	0	0	0	0	0	0	1	10420	912	32	2		2	NEUROD1	2	182543321	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2886481	182543321	60656052	168	63874										
STAT1	0	genome.wustl.edu	37	chr2	191850372	191850372	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttctggtgccagcatttttCtgttctttcaattgctataa	7	8	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	191850372	191850372	C	G	SNP	STAT1	ENST00000361099	human	ensembl	69_37n	-1	known	missense	c.1236	p.Q412H	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	130	0	0	89	38	29.92	-	-	-	G	191850372	C	G	191850372	3	3	727	1	0	0	0	0	1	0	0	0	15355	912	32	2	1064	2	STAT1	2	191850372	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	9307051	191850372	51349001	169	63875										
KLF7	0	genome.wustl.edu	37	chr2	207945972	207945972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catgtggagggcaagatggtCagacctggaaaaacacctag	13	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	207945972	207945972	C	G	SNP	KLF7	ENST00000309446	human	ensembl	69_37n	-1	known	missense	c.874	p.D292H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	73	0	0	57	19	25	-	-	-	G	207945972	C	G	207945972	3	3	727	1	0	0	0	0	1	0	0	0	8404	826	29	2	38	2	KLF7	2	207945972	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	16095600	207945972	35253401	170	63876										
VIL1	0	genome.wustl.edu	37	chr2	219296867	219296867	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgctgctctacacctacctCatcggcgagaagcagcatta	8	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	219296867	219296867	C	T	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	1	known	silent	c.1302	p.L434	0.776	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	45	0	0	15	9	37.5	-	-	-	T	219296867	C	T	219296867	2	4	727	1	0	0	0	0	0	0	0	1	17261	813	29	2		2	VIL1	2	219296867	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	11350895	219296867	23902506	171	63877										
RQCD1	0	genome.wustl.edu	37	chr2	219457418	219457418	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagatgttaccttcgactttCagataaccccaggtaaacat	7	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	219457418	219457418	C	T	SNP	RQCD1	ENST00000509807	human	ensembl	69_37n	1	known	missense	c.815	p.S272L	1.000	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	pfam_Cell_differentiation_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580	53	0	0	48	13	21.31	-	-	-	T	219457418	C	T	219457418	3	4	727	1	0	0	0	0	1	0	0	0	13756	838	29	2	745	2	RQCD1	2	219457418	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	160551	219457418	23741955	172	63878										
CCDC108	0	genome.wustl.edu	37	chr2	219887984	219887984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctggacagccagcagctttCgatgctgctcagagaccctc	11	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	219887984	219887984	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.2765	p.R922Q	0.062	superfamily_PapD-like,pfscan_Major_sperm	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	33	0	0	21	9	29.03	-	-	-	T	219887984	C	T	219887984	3	4	727	1	0	0	0	0	1	0	0	0	2768	884	31	1	3092	1	CCDC108	2	219887984	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	430566	219887984	23311389	173	63879										
SPEG	0	genome.wustl.edu	37	chr2	220341673	220341673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctttgcggtggtggtcgaggGaaaaccactgccggacatca	14	10	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	220341673	220341673	G	A	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.4529	p.G1510E	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	44	0	0	18	5	21.74	-	-	-	A	220341673	G	A	220341673	3	1	727	1	0	0	0	0	1	0	0	0	15127	1174	41	2	4615	2	SPEG	2	220341673	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	453689	220341673	22857700	174	63880										
PSMD1	0	genome.wustl.edu	37	chr2	232011053	232011053	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcatcatgatccagcagactGaaatcacttgtccaaaggtg	8	10	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	232011053	232011053	G	A	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.2098	p.E700K	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	47	0	0	32	10	23.81	-	-	-	A	232011053	G	A	232011053	3	1	727	1	0	0	0	0	1	0	0	0	12772	1291	45	2	2168	2	PSMD1	2	232011053	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11669380	232011053	11188320	175	63881										
EIF4E2	0	genome.wustl.edu	37	chr2	233431864	233431864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatccgggacacacttcggcGagtgcttaacctacctccca	8	15	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	233431864	233431864	G	A	SNP	EIF4E2	ENST00000258416	human	ensembl	69_37n	1	known	missense	c.605	p.R202Q	1.000	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E2	HGNC	ENSG00000135930	45	0	0	19	16	45.71	-	-	-	A	233431864	G	A	233431864	3	1	727	1	0	0	0	0	1	0	0	0	5067	1058	37	1	627	1	EIF4E2	2	233431864	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1420811	233431864	9767509	176	63882										
ATG16L1	0	genome.wustl.edu	37	chr2	234171846	234171846	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aactgaggattaagcaccaaGaggaactgactgaattacac	9	8	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	234171846	234171846	G	C	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.280	p.E94Q	1.000	pfam_Autophagy-rel_prot_16	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	74	0	0	39	16	29.09	-	-	-	C	234171846	G	C	234171846	3	2	727	1	0	0	0	0	1	0	0	0	1095	943	33	2	290	2	ATG16L1	2	234171846	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	739982	234171846	9027527	177	63883										
ATG16L1	0	genome.wustl.edu	37	chr2	234182378	234182378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctctttagtaagcgactctCgcagcctgctggaggccttc	10	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	234182378	234182378	C	T	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.806	p.S269L	1.000	NULL	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	165	0	0	131	52	28.42	-	-	-	T	234182378	C	T	234182378	3	4	727	1	0	0	0	0	1	0	0	0	1095	893	31	1	836	1	ATG16L1	2	234182378	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10532	234182378	9016995	178	63884										
SH3BP4	0	genome.wustl.edu	37	chr2	235950431	235950431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgacaccagcatcagcatcCacgtgcccgagggccacgtc	10	17	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	2	235950431	235950431	C	T	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.1018	p.H340Y	1.000	pfam_ZU5	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	8	0	0	5	4	44.44	-	-	-	T	235950431	C	T	235950431	3	4	727	1	0	0	0	0	1	0	0	0	14334	594	21	4	1024	4	SH3BP4	2	235950431	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1768053	235950431	7248942	179	63885										
COLQ	0	genome.wustl.edu	37	chr3	15518644	15518644	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacacttaccctgggtccttCagggcctggccaaccgatgg	11	15	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	15518644	15518644	C	T	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	missense	c.454	p.E152K	0.966	pfam_Collagen	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	50	0	0	24	8	25	-	-	-	T	15518644	C	T	15518644	3	4	727	1	0	0	0	0	1	0	0	0	3743	835	29	2	961	2	COLQ	3	15518644	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		15518644	182503786	180	63886										
NEK10	0	genome.wustl.edu	37	chr3	27204223	27204223	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgatcctgttcctccagtGaagtccctgaaaatagaatt	7	10	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	27204223	27204223	G	A	SNP	NEK10	ENST00000383771	human	ensembl	69_37n	-1	known	silent	c.774	p.F258	0.934	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	76	0	0	70	21	22.58	-	-	-	A	27204223	G	A	27204223	2	1	727	1	0	0	0	0	0	0	0	1	10394	1305	45	2		2	NEK10	3	27204223	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11685579	27204223	170818207	181	63887										
CCR4	0	genome.wustl.edu	37	chr3	32995515	32995515	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actccacgacgtggaaggttCtcagctccctggaaatcaac	9	13	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	32995515	32995515	C	T	SNP	CCR4	ENST00000330953	human	ensembl	69_37n	1	known	missense	c.601	p.L201F	0.034	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR4,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR4,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_ATII_rcpt,prints_Duffy_chemokine_rcpt	-	no_errors	CCR4	HGNC	ENSG00000183813	32	0	0	39	5	11.11	-	-	-	T	32995515	C	T	32995515	3	4	727	1	0	0	0	0	1	0	0	0	2972	913	32	2	603	2	CCR4	3	32995515	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5791292	32995515	165026915	182	63888										
UBP1	0	genome.wustl.edu	37	chr3	33451004	33451004	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgtattctccattttcattCtgcttaaaggtgtcaacctg	7	9	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	33451004	33451004	C	G	SNP	UBP1	ENST00000283628	human	ensembl	69_37n	-1	known	missense	c.645	p.Q215H	1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560	96	0	0	70	36	33.96	-	-	-	G	33451004	C	G	33451004	3	3	727	1	0	0	0	0	1	0	0	0	16992	912	32	2	1021	2	UBP1	3	33451004	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	455489	33451004	164571426	183	63889										
STAC	0	genome.wustl.edu	37	chr3	36534670	36534670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcttgtggaggttcctgagGaagccaatgggccaggaggc	16	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	36534670	36534670	G	A	SNP	STAC	ENST00000273183	human	ensembl	69_37n	1	known	missense	c.715	p.E239K	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	74	0	0	38	11	22.45	-	-	-	A	36534670	G	A	36534670	3	1	727	1	0	0	0	0	1	0	0	0	15330	1175	41	2	737	2	STAC	3	36534670	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3083666	36534670	161487760	184	63890										
GOLGA4	0	genome.wustl.edu	37	chr3	37388711	37388711	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttgtaccatacggatgtctCactctttggagaacctaccg	8	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	37388711	37388711	C	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	1	known	nonsense	c.6500	p.S2167*	0.997	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	115	0	0	108	16	12.8	-	-	-	A	37388711	C	A	37388711	4	1	727	1	0	0	0	0	0	1	0	0	6607	838	29	2	6652	2	GOLGA4	3	37388711	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	854041	37388711	160633719	185	63891										
KIF15	0	genome.wustl.edu	37	chr3	44867541	44867541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccttataaaggttagaaaacGaaaagctgcttgagagcaaa	9	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	44867541	44867541	G	A	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	missense	c.2560	p.E854K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	46	0	0	39	10	20.41	-	-	-	A	44867541	G	A	44867541	3	1	727	1	0	0	0	0	1	0	0	0	8329	1059	37	1	2642	1	KIF15	3	44867541	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7478830	44867541	153154889	186	63892										
SETD2	0	genome.wustl.edu	37	chr3	47163682	47163682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgaagaaatcttcataactGaaggctcaatattttcagct	6	7	4	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47163682	47163682	G	T	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	nonsense	c.2444	p.S815*	0.987	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	66	0	0	44	11	20	-	-	-	T	47163682	G	T	47163682	4	4	727	1	0	0	0	0	0	1	0	0	14219	1294	45	2	5326	2	SETD2	3	47163682	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2296141	47163682	150858748	187	63893										
SETD2	0	genome.wustl.edu	37	chr3	47163993	47163993	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatgaaagcatgcatgctttGaccaaaggggataattccga	11	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47163993	47163993	G	A	SNP	SETD2	ENST00000445387	human	ensembl	69_37n	-1	known	nonsense	c.1033	p.Q345*	0.377	NULL	pfam_SET_dom,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SETD2	HGNC	ENSG00000181555	50	0	0	27	14	34.15	-	-	-	A	47163993	G	A	47163993	4	1	727	1	0	0	0	0	0	1	0	0	14219	1277	45	2	5637	2	SETD2	3	47163993	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	311	47163993	150858437	188	63894										
SETD2	0	genome.wustl.edu	37	chr3	47165816	47165816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacctgaagaggtacagctgGagggtttggagtatcacttt	13	6	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47165816	47165816	G	A	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.310	p.P104S	0.997	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	135	0	0	91	30	24.59	-	-	-	A	47165816	G	A	47165816	3	1	727	1	0	0	0	0	1	0	0	0	14219	1174	41	2	7460	2	SETD2	3	47165816	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1823	47165816	150856614	189	63895										
PTPN23	0	genome.wustl.edu	37	chr3	47451651	47451651	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccaggaccccactatctctCaggccccttgccccctggta	7	20	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47451651	47451651	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.2363	p.S788L	0.260	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	37	0	0	11	8	42.11	-	-	-	T	47451651	C	T	47451651	3	4	727	1	0	0	0	0	1	0	0	0	12871	838	29	2	2441	2	PTPN23	3	47451651	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	285835	47451651	150570779	190	63896										
PTPN23	0	genome.wustl.edu	37	chr3	47453831	47453831	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgcagctgtgcaggaggtgGaggctgggaacggaatccct	17	8	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47453831	47453831	G	T	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	nonsense	c.4237	p.E1413*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	20	0	0	12	4	25	-	-	-	T	47453831	G	T	47453831	4	4	727	1	0	0	0	0	0	1	0	0	12871	1175	41	2	4327	2	PTPN23	3	47453831	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2180	47453831	150568599	191	63897										
SMARCC1	0	genome.wustl.edu	37	chr3	47676820	47676820	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtgagttctttgttctcttCagtctccttttcttctgaaa	6	9	6	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	47676820	47676820	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2506	p.E836K	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	165	0	0	122	28	18.67	-	-	-	T	47676820	C	T	47676820	3	4	727	1	0	0	0	0	1	0	0	0	14864	835	29	2	831	2	SMARCC1	3	47676820	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	222989	47676820	150345610	192	63898										
ZNF589	0	genome.wustl.edu	37	chr3	48298098	48298098	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccctcaatcttgcagttctCttcccgtcataggcctgtga	7	15	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	48298098	48298098	C	G	SNP	ZNF589	ENST00000454212	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF589	HGNC	ENSG00000164048	61	0	0	31	14	31.11	-	-	-	G	48298098	C	G	48298098	1	3	727	0	1	0	0	0	0	0	0	0	18117	928	32	2		2	ZNF589	3	48298098	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	621278	48298098	149724332	193	63899										
SLC25A20	0	genome.wustl.edu	37	chr3	48896537	48896537	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccactcaccagtctggaatcGagacttgagcacatctgggg	11	12	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	48896537	48896537	G	A	SNP	SLC25A20	ENST00000319017	human	ensembl	69_37n	-1	known	nonsense	c.706	p.R236*	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A20	HGNC	ENSG00000178537	36	0	0	13	7	35	-	-	-	A	48896537	G	A	48896537	4	1	727	1	0	0	0	0	0	1	0	0	14572	1066	37	1	211	1	SLC25A20	3	48896537	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	598439	48896537	149125893	194	63900										
RHOA	0	genome.wustl.edu	37	chr3	49412973	49412973	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctatgagcaagcatgtctttCcacaggctccatcaccaaca	6	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49412973	49412973	C	G	SNP	RHOA	ENST00000418115	human	ensembl	69_37n	-1	known	missense	c.50	p.G17A	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	55	0	0	46	14	23.33	-	-	-	G	49412973	C	G	49412973	3	3	727	1	0	0	0	0	1	0	0	0	13415	855	30	2	547	2	RHOA	3	49412973	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	516436	49412973	148609457	195	63901										
BSN	0	genome.wustl.edu	37	chr3	49693239	49693239	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagatgcagttggcttccagGaggccagcctggcccagtac	14	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49693239	49693239	G	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	nonsense	c.6250	p.E2084*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	24	0	0	13	3	18.75	-	-	-	T	49693239	G	T	49693239	4	4	727	1	0	0	0	0	0	1	0	0	1538	1175	41	2	6268	2	BSN	3	49693239	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	280266	49693239	148329191	196	63902										
MST1R	0	genome.wustl.edu	37	chr3	49934985	49934985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctctcagcacggaggtgcCgtctacccggaagtgcttgc	13	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49934985	49934985	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.2014	p.G672S	0.996	pirsf_Tyr_kinase_HGF/MSP_rcpt,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	21	0	0	11	5	31.25	-	-	-	T	49934985	C	T	49934985	3	4	727	1	0	0	0	0	1	0	0	0	9963	652	23	1	2248	1	MST1R	3	49934985	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	241746	49934985	148087445	197	63903										
MST1R	0	genome.wustl.edu	37	chr3	49940844	49940844	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggctacaaacacagcactctCatttctgtcgccctcgtagg	8	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49940844	49940844	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.199	p.E67K	0.003	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	44	0	0	27	6	17.14	-	-	-	T	49940844	C	T	49940844	3	4	727	1	0	0	0	0	1	0	0	0	9963	835	29	2	4083	2	MST1R	3	49940844	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5859	49940844	148081586	198	63904										
MST1R	0	genome.wustl.edu	37	chr3	49940880	49940880	+	Missense_Mutation	SNP	C	C	G													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtaggtcaccatggcctgtaCcaggcctccggcggagaagc							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49940880	49940880	C	G	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.163	p.V55L	0.924	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	38	0	0	21	8	27.59	-	-	-	G	49940880	C	G	49940880	3	3	727	1	0	0	0	0	1	0	0	0	9963	507	18	4	4119	4	MST1R	3	49940880	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	36	49940880	148081550	199	63905	468	2								
MST1R	0	genome.wustl.edu	37	chr3	49940888	49940888	+	Missense_Mutation	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccatggcctgtaccaggcctCcggcggagaagctgggcacc							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	49940888	49940888	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.155	p.G52E	0.001	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	38	0	0	23	7	23.33	-	-	-	T	49940888	C	T	49940888	3	4	727	1	0	0	0	0	1	0	0	0	9963	855	30	2	4127	2	MST1R	3	49940888	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8	49940888	148081542	200	63906	468	2								
RBM6	0	genome.wustl.edu	37	chr3	50103765	50103765	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagaggaggaacagacccctCccccacagccccgcacagca	9	18	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	50103765	50103765	C	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.2773	p.P925A	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	43	0	0	39	14	26.42	-	-	-	G	50103765	C	G	50103765	3	3	727	1	0	0	0	0	1	0	0	0	13227	855	30	2	2835	2	RBM6	3	50103765	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	162877	50103765	147918665	201	63907										
PARP3	0	genome.wustl.edu	37	chr3	51978149	51978149	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgaaccagaccaacatcgaGaacaacaacaacaagttcta	5	12	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	51978149	51978149	G	C	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	missense	c.249	p.E83D	0.000	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	43	0	0	10	5	33.33	-	-	-	C	51978149	G	C	51978149	3	2	727	1	0	0	0	0	1	0	0	0	11535	933	33	2	259	2	PARP3	3	51978149	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1874384	51978149	146044281	202	63908										
PARP3	0	genome.wustl.edu	37	chr3	51978890	51978890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcactaacatcttcagcaagGagatgttcaagaacaccatg	7	10	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	51978890	51978890	G	A	SNP	PARP3	ENST00000398755	human	ensembl	69_37n	1	known	missense	c.619	p.E207K	1.000	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	26	0	0	14	8	36.36	-	-	-	A	51978890	G	A	51978890	3	1	727	1	0	0	0	0	1	0	0	0	11535	1175	41	2	637	2	PARP3	3	51978890	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	741	51978890	146043540	203	63909										
NEK4	0	genome.wustl.edu	37	chr3	52745823	52745823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgttttcttcaaaaaatttCaactggcgagctttcacact	5	9	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	52745823	52745823	C	G	SNP	NEK4	ENST00000233027	human	ensembl	69_37n	-1	known	missense	c.2496	p.L832F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904	88	0	0	76	19	20	-	-	-	G	52745823	C	G	52745823	3	3	727	1	0	0	0	0	1	0	0	0	10398	825	29	2	33	2	NEK4	3	52745823	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	766933	52745823	145276607	204	63910										
DNAH12	0	genome.wustl.edu	37	chr3	57335860	57335860	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccatatttctggaacctttCcaacaagtaagctaccggag	7	12	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	57335860	57335860	C	T	SNP	DNAH12	ENST00000462199	human	ensembl	69_37n	-1	putative	nonsense	c.1764	p.W588*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH12	HGNC	ENSG00000174844	68	0	0	42	17	28.33	-	-	-	T	57335860	C	T	57335860	4	4	727	1	0	0	0	0	0	1	0	0	4636	855	30	2	605	2	DNAH12	3	57335860	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4590037	57335860	140686570	205	63911										
PSMD6	0	genome.wustl.edu	37	chr3	64009039	64009039	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcaggaagcgcagctgcgcGatacgcaagtcggggttctt	15	10	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	64009039	64009039	G	C	SNP	PSMD6	ENST00000295901	human	ensembl	69_37n	-1	known	missense	c.57	p.I19M	1.000	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD6	HGNC	ENSG00000163636	19	0	0	15	4	21.05	-	-	-	C	64009039	G	C	64009039	3	2	727	1	0	0	0	0	1	0	0	0	12782	1048	37	3	1144	3	PSMD6	3	64009039	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6673179	64009039	134013391	206	63912										
KBTBD8	0	genome.wustl.edu	37	chr3	67053917	67053917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcgatcaaaagaatacattCgtaaaaagtttctgtgtgtc	7	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	67053917	67053917	C	T	SNP	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	missense	c.526	p.R176C	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	29	0	0	29	8	21.62	-	-	-	T	67053917	C	T	67053917	3	4	727	1	0	0	0	0	1	0	0	0	8053	884	31	1	536	1	KBTBD8	3	67053917	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3044878	67053917	130968513	207	63913										
CRYBG3	0	genome.wustl.edu	37	chr3	97596117	97596117	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaacacagtctgtcttgtttCatgatacgtccgctgacagc	8	11	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	97596117	97596117	C	A	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.235	p.H79N	0.439	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	30	0	0	29	8	21.62	-	-	-	A	97596117	C	A	97596117	3	1	727	1	0	0	0	0	1	0	0	0	3943	826	29	2	237	2	CRYBG3	3	97596117	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	30542200	97596117	100426313	208	63914										
COL8A1	0	genome.wustl.edu	37	chr3	99513932	99513932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggagagccaggcctgcctgGaatcccaggtcctatgggcc	14	13	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	99513932	99513932	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	missense	c.1187	p.G396V	1.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	25	0	0	13	9	40.91	-	-	-	T	99513932	G	T	99513932	3	4	727	1	0	0	0	0	1	0	0	0	3735	1174	41	2	1193	2	COL8A1	3	99513932	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1917815	99513932	98508498	209	63915										
BBX	0	genome.wustl.edu	37	chr3	107492312	107492312	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaccattgacccctatggaaGatgcactaccacccagccta	6	15	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	107492312	107492312	G	A	SNP	BBX	ENST00000325805	human	ensembl	69_37n	1	known	missense	c.1744	p.D582N	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	35	0	0	30	14	31.82	-	-	-	A	107492312	G	A	107492312	3	1	727	1	0	0	0	0	1	0	0	0	1347	942	33	2	1774	2	BBX	3	107492312	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7978380	107492312	90530118	210	63916										
CD96	0	genome.wustl.edu	37	chr3	111342638	111342638	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagtgacccttgtagatgtGagtgccttgaggccaaacac	11	10	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	111342638	111342638	G	C	SNP	CD96	ENST00000283285	human	ensembl	69_37n	1	known	silent	c.1266	p.V422	0.002	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	70	0	0	41	7	14.58	-	-	-	C	111342638	G	C	111342638	2	2	727	1	0	0	0	0	0	0	0	1	3077	1277	45	2		2	CD96	3	111342638	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3850326	111342638	86679792	211	63917										
PARP9	0	genome.wustl.edu	37	chr3	122274435	122274435	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aattgctactgtcttaatgtGagtatttttatagatgacat	7	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	122274435	122274435	G	C	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	missense	c.688	p.H230D	0.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	65	0	0	69	11	13.75	-	-	-	C	122274435	G	C	122274435	3	2	727	1	0	0	0	0	1	0	0	0	11539	1290	45	2	1961	2	PARP9	3	122274435	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10931797	122274435	75747995	212	63918										
PARP9	0	genome.wustl.edu	37	chr3	122274953	122274953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttgccaactatagttttctCcaagagcaccagtctctgga	7	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	122274953	122274953	C	G	SNP	PARP9	ENST00000360356	human	ensembl	69_37n	-1	known	missense	c.170	p.G57A	0.000	NULL	pfam_A1pp,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	14	0	0	11	5	31.25	-	-	-	G	122274953	C	G	122274953	3	3	727	1	0	0	0	0	1	0	0	0	11539	855	30	2	2479	2	PARP9	3	122274953	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	518	122274953	75747477	213	63919										
KIAA1257	0	genome.wustl.edu	37	chr3	128696921	128696921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggtgtttttctgttttttCttgttttcctggcggatgtt	11	5	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	128696921	128696921	C	G	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.775	p.E259Q	0.016	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	221	0	0	162	61	27.35	-	-	-	G	128696921	C	G	128696921	3	3	727	1	0	0	0	0	1	0	0	0	8270	922	32	2	470	2	KIAA1257	3	128696921	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6421968	128696921	69325509	214	63920										
MBD4	0	genome.wustl.edu	37	chr3	129155812	129155812	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgggctttctaacctttctGaagttaacatcatcaacacc	5	11	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	129155812	129155812	G	A	SNP	MBD4	ENST00000249910	human	ensembl	69_37n	-1	known	silent	c.675	p.F225	0.001	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_integrase-typ,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071	94	0	0	73	27	26.47	-	-	-	A	129155812	G	A	129155812	2	1	727	1	0	0	0	0	0	0	0	1	9417	1281	45	2		2	MBD4	3	129155812	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	458891	129155812	68866618	215	63921										
PLXND1	0	genome.wustl.edu	37	chr3	129279238	129279238	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgcgatggctctgccggtGagacttcttgggctccgcca	13	13	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	129279238	129279238	G	A	SNP	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	missense	c.5068	p.H1690Y	0.998	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	43	0	0	17	6	26.09	-	-	-	A	129279238	G	A	129279238	3	1	727	1	0	0	0	0	1	0	0	0	12201	1290	45	2	733	2	PLXND1	3	129279238	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	123426	129279238	68743192	216	63922										
ACAD11	0	genome.wustl.edu	37	chr3	132345562	132345562	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctggaagaatgtgttgtttCatgaaatgcttcaccttaat	9	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	132345562	132345562	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.1170	p.M390I	1.000	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	115	0	0	89	26	22.61	-	-	-	T	132345562	C	T	132345562	3	4	727	1	0	0	0	0	1	0	0	0	109	826	29	2	1220	2	ACAD11	3	132345562	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3066324	132345562	65676868	217	63923										
CLSTN2	0	genome.wustl.edu	37	chr3	140185532	140185532	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaaggacttcgaccaggctGacacctttcgccccgcggag	13	14	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	140185532	140185532	G	A	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	1	known	missense	c.1303	p.D435N	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	43	0	0	17	8	32	-	-	-	A	140185532	G	A	140185532	3	1	727	1	0	0	0	0	1	0	0	0	3592	1290	45	2	1333	2	CLSTN2	3	140185532	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7839970	140185532	57836898	218	63924										
ACPL2	0	genome.wustl.edu	37	chr3	140997221	140997221	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcgactcctaagaatggaatGagtagcaagagtcgaaagag	12	6	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	140997221	140997221	G	C	SNP	ACPL2	ENST00000286353	human	ensembl	69_37n	1	known	missense	c.117	p.M39I	0.012	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	ACPL2	HGNC	ENSG00000155893	53	0	0	25	11	29.73	-	-	-	C	140997221	G	C	140997221	3	2	727	1	0	0	0	0	1	0	0	0	166	1290	45	2	123	2	ACPL2	3	140997221	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	811689	140997221	57025209	219	63925										
ACPL2	0	genome.wustl.edu	37	chr3	141011696	141011696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggccggatgcagcgtgccacCgagggcaggaaagaagagct	17	10	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	141011696	141011696	C	T	SNP	ACPL2	ENST00000286353	human	ensembl	69_37n	1	known	silent	c.1092	p.T364	0.017	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPL2	HGNC	ENSG00000155893	29	0	0	22	4	15.38	-	-	-	T	141011696	C	T	141011696	2	4	727	1	0	0	0	0	0	0	0	1	166	639	23	1		1	ACPL2	3	141011696	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14475	141011696	57010734	220	63926										
CP	0	genome.wustl.edu	37	chr3	148903057	148903057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaatgatgcagctccttttCccactccctttgtggggaat	8	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	148903057	148903057	C	T	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	missense	c.2254	p.E752K	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	84	0	0	61	10	13.89	-	-	-	T	148903057	C	T	148903057	3	4	727	1	0	0	0	0	1	0	0	0	3817	864	30	2	975	2	CP	3	148903057	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7891361	148903057	49119373	221	63927										
PLCH1	0	genome.wustl.edu	37	chr3	155301389	155301389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttgtaaaaaacacagaactCttcaaatgtcaaagttccct	4	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	155301389	155301389	C	G	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.607	p.E203Q	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	40	0	0	50	14	21.88	-	-	-	G	155301389	C	G	155301389	3	3	727	1	0	0	0	0	1	0	0	0	12111	922	32	2	4565	2	PLCH1	3	155301389	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6398332	155301389	42721041	222	63928										
IL12A	0	genome.wustl.edu	37	chr3	159713202	159713202	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctcctaggccctgaatttCaacagtgagactgtgccaca	8	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	159713202	159713202	C	T	SNP	IL12A	ENST00000305579	human	ensembl	69_37n	1	known	silent	c.618	p.F206	0.019	pfam_IL12,superfamily_4_helix_cytokine-like_core	pfam_IL12,superfamily_4_helix_cytokine-like_core	-	no_errors	IL12A	HGNC	ENSG00000168811	72	0	0	45	18	28.57	-	-	-	T	159713202	C	T	159713202	2	4	727	1	0	0	0	0	0	0	0	1	7678	825	29	2		2	IL12A	3	159713202	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4411813	159713202	38309228	223	63929										
NMD3	0	genome.wustl.edu	37	chr3	160942832	160942832	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgaaacaagtctcgatttcGttctgcaaacaatgtcaaag	7	10	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	160942832	160942832	G	C	SNP	NMD3	ENST00000351193	human	ensembl	69_37n	1	known	silent	c.159	p.S53	0.977	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251	95	0	0	80	9	10	-	-	-	C	160942832	G	C	160942832	2	2	727	1	0	0	0	0	0	0	0	1	10560	1132	40	3		3	NMD3	3	160942832	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1229630	160942832	37079598	224	63930										
LRRC31	0	genome.wustl.edu	37	chr3	169569447	169569447	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctccaaagcacagttgttGataactaatgacttcaatgc	6	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	169569447	169569447	G	C	SNP	LRRC31	ENST00000316428	human	ensembl	69_37n	-1	known	missense	c.1119	p.I373M	0.811	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248	115	0	0	83	39	31.97	-	-	-	C	169569447	G	C	169569447	3	2	727	1	0	0	0	0	1	0	0	0	9052	1280	45	2	551	2	LRRC31	3	169569447	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8626615	169569447	28452983	225	63931										
PHC3	0	genome.wustl.edu	37	chr3	169815093	169815093	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgatattcattgcactcatGagatggtcttctttcagcaa	7	8	5	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	169815093	169815093	G	C	SNP	PHC3	ENST00000484068	human	ensembl	69_37n	-1	known	nonsense	c.410	p.S137*	0.998	pfam_SAM_type1,pfam_SAM_2,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHC3	HGNC	ENSG00000173889	77	0	0	79	12	12.9	-	-	-	C	169815093	G	C	169815093	4	2	727	1	0	0	0	0	0	1	0	0	11892	1277	45	2	78	2	PHC3	3	169815093	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	245646	169815093	28207337	226	63932										
TNIK	0	genome.wustl.edu	37	chr3	170843929	170843929	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccctgggattttacagctacCagatgtgggatctaagcatc	10	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	170843929	170843929	C	T	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	silent	c.1785	p.L595	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	48	0	0	34	7	17.07	-	-	-	T	170843929	C	T	170843929	2	4	727	1	0	0	0	0	0	0	0	1	16408	581	21	4		4	TNIK	3	170843929	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1028836	170843929	27178501	227	63933										
PLD1	0	genome.wustl.edu	37	chr3	171360647	171360647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacgctctgcttttaactgtCcaaggatggaattttctcct	7	10	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	171360647	171360647	C	T	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.2576	p.G859E	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	65	0	0	55	20	26.67	-	-	-	T	171360647	C	T	171360647	3	4	727	1	0	0	0	0	1	0	0	0	12119	855	30	2	668	2	PLD1	3	171360647	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	516718	171360647	26661783	228	63934										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	44	0	0	49	6	10.91	-	-	-	G	178952085	A	G	178952085	3	3	727	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	7591438	178952085	19070345	229	63935										
KCNMB3	0	genome.wustl.edu	37	chr3	178968844	178968844	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtgtctcgtgagcaggatGaatgcaacaaaatgaaatcc	10	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	178968844	178968844	G	A	SNP	KCNMB3	ENST00000314235	human	ensembl	69_37n	-1	known	silent	c.48	p.F16	0.000	NULL	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121	70	0	0	66	25	27.47	-	-	-	A	178968844	G	A	178968844	2	1	727	1	0	0	0	0	0	0	0	1	8130	1281	45	2		2	KCNMB3	3	178968844	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	16759	178968844	19053586	230	63936										
EIF4G1	0	genome.wustl.edu	37	chr3	184039808	184039808	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agaagctgagagtgagaaagGaggagaggaactgctccccc	15	8	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	184039808	184039808	G	T	SNP	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	missense	c.1457	p.G486V	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	28	0	0	21	9	30	-	-	-	T	184039808	G	T	184039808	3	4	727	1	0	0	0	0	1	0	0	0	5073	1174	41	2	1466	2	EIF4G1	3	184039808	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5070964	184039808	13982622	231	63937										
ETV5	0	genome.wustl.edu	37	chr3	185823642	185823642	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cataaaagggacttgctgatCataaaacccgtccatggtgc	9	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	185823642	185823642	C	G	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.142	p.D48H	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	90	0	0	51	21	28.77	-	-	-	G	185823642	C	G	185823642	3	3	727	1	0	0	0	0	1	0	0	0	5319	826	29	2	1564	2	ETV5	3	185823642	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1783834	185823642	12198788	232	63938										
IL1RAP	0	genome.wustl.edu	37	chr3	190373869	190373869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcacccgcacccaggcattCttcagctcaaagagtctgtg	9	14	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	190373869	190373869	C	G	SNP	IL1RAP	ENST00000443369	human	ensembl	69_37n	1	known	missense	c.1537	p.L513V	0.847	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	44	0	0	44	10	18.18	-	-	-	G	190373869	C	G	190373869	3	3	727	1	0	0	0	0	1	0	0	0	7714	913	32	2	1967	2	IL1RAP	3	190373869	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4550227	190373869	7648561	233	63939										
OSTN	0	genome.wustl.edu	37	chr3	190967882	190967882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccccatggatcggattggtaGaaaccggctttcaaattcca	9	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	190967882	190967882	G	A	SNP	OSTN	ENST00000339051	human	ensembl	69_37n	1	known	missense	c.374	p.R125K	0.563	pfam_Osteocrin	pfam_Osteocrin	-	no_errors	OSTN	HGNC	ENSG00000188729	82	0	0	69	22	23.91	-	-	-	A	190967882	G	A	190967882	3	1	727	1	0	0	0	0	1	0	0	0	11372	942	33	2	384	2	OSTN	3	190967882	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	594013	190967882	7054548	234	63940										
ATP13A5	0	genome.wustl.edu	37	chr3	192992930	192992930	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcatagcctccgttgatgtaGaatccatttttgccatcacc	6	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	192992930	192992930	G	A	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	silent	c.3558	p.F1186	0.998	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	141	0	0	108	25	18.66	-	-	-	A	192992930	G	A	192992930	2	1	727	1	0	0	0	0	0	0	0	1	1131	933	33	2		2	ATP13A5	3	192992930	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2025048	192992930	5029500	235	63941										
ATP13A4	0	genome.wustl.edu	37	chr3	193160240	193160240	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acgtccaagatatagatgctGatgaggacccggtggtttca	12	8	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	193160240	193160240	G	A	SNP	ATP13A4	ENST00000428352	human	ensembl	69_37n	-1	known	nonsense	c.1177	p.Q393*	0.614	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP13A4	HGNC	ENSG00000127249	108	0	0	75	35	31.82	-	-	-	A	193160240	G	A	193160240	4	1	727	1	0	0	0	0	0	1	0	0	1130	1294	45	2	1380	2	ATP13A4	3	193160240	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	167310	193160240	4862190	236	63942										
RNF168	0	genome.wustl.edu	37	chr3	196199186	196199186	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attcgggggacacttttcttCtttttgcagaaaagcatgga	10	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	196199186	196199186	C	G	SNP	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	missense	c.1220	p.R407T	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	95	0	0	90	12	11.76	-	-	-	G	196199186	C	G	196199186	3	3	727	1	0	0	0	0	1	0	0	0	13545	913	32	2	499	2	RNF168	3	196199186	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3038946	196199186	1823244	237	63943										
RNF168	0	genome.wustl.edu	37	chr3	196210659	196210662	+	Frame_Shift_Del	DEL	TTTC	TTTC	-													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttctgaatatctccagtgTttctttgtttgttcttactt							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	TTTC	TTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	196210659	196210662	TTTC	-	DEL	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	frame_shift_del	c.662_659	p.R220fs	0.000:0.000:0.000:0.001	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	127	0	0	97	25	20.33	-	-	-	-	196210662	TTTC	-	196210659	7	5	727	1	0	1	0	1	0	0	0	0	13545	1725	60	0	1065	0	RNF168	3	196210659	Frame_Shift_Del	DEL	TTTC	TCGA-D8-A27G-01A-11D-A16D-09	11473	196210659	1811771	238	63944										
FYTTD1	0	genome.wustl.edu	37	chr3	197497048	197497048	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaaaaggaaggcaaaccttCtgagacaaaatgaagggcag	11	6	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	3	197497048	197497048	C	T	SNP	FYTTD1	ENST00000241502	human	ensembl	69_37n	1	known	silent	c.430	p.L144	1.000	pfam_DUF1346	pfam_DUF1346	-	no_errors	FYTTD1	HGNC	ENSG00000122068	74	0	0	39	18	31.58	-	-	-	T	197497048	C	T	197497048	2	4	727	1	0	0	0	0	0	0	0	1	6176	912	32	2		2	FYTTD1	3	197497048	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1286389	197497048	525382	239	63945										
ZNF721	0	genome.wustl.edu	37	chr4	438174	438174	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagtttgtggaatgaatcttCtatcccctgcactggcaaaa	8	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	438174	438174	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	49	0	0	28	8	22.22	-	-	-	T	438174	C	T	438174	3	4	727	1	0	0	0	0	1	0	0	0	18218	922	32	2	2693	2	ZNF721	4	438174	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		438174	190716102	240	63946										
PIGG	0	genome.wustl.edu	37	chr4	524392	524392	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctggcagccttgctctttaGaccacataatcttccggtct	7	13	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	524392	524392	G	A	SNP	PIGG	ENST00000453061	human	ensembl	69_37n	1	known	missense	c.2429	p.R810K	0.522	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	136	0	0	111	22	16.54	-	-	-	A	524392	G	A	524392	3	1	727	1	0	0	0	0	1	0	0	0	11962	942	33	2	2471	2	PIGG	4	524392	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	86218	524392	190629884	241	63947										
HTT	0	genome.wustl.edu	37	chr4	3190748	3190748	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctgaaggtggaaatgagtGagcagcaacatactttctat	11	6	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	3190748	3190748	G	A	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.5296	p.E1766K	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	116	0	0	71	33	31.73	-	-	-	A	3190748	G	A	3190748	3	1	727	1	0	0	0	0	1	0	0	0	7511	1291	45	2	5454	2	HTT	4	3190748	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2666356	3190748	187963528	242	63948										
KIAA0232	0	genome.wustl.edu	37	chr4	6864958	6864958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggggagtgggcagtcgtacCacctagtcacacaaaaggaa	13	9	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	6864958	6864958	C	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.2849	p.P950L	0.999	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	48	0	0	47	13	21.67	-	-	-	T	6864958	C	T	6864958	3	4	727	1	0	0	0	0	1	0	0	0	8215	594	21	4	2867	4	KIAA0232	4	6864958	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3674210	6864958	184289318	243	63949										
BST1	0	genome.wustl.edu	37	chr4	15720590	15720590	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggctgaaggacatggggttCcagtacagctgtattaatga	13	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	15720590	15720590	C	G	SNP	BST1	ENST00000265016	human	ensembl	69_37n	1	known	missense	c.765	p.F255L	1.000	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	BST1	HGNC	ENSG00000109743	93	0	0	77	15	16.3	-	-	-	G	15720590	C	G	15720590	3	3	727	1	0	0	0	0	1	0	0	0	1541	854	30	2	791	2	BST1	4	15720590	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8855632	15720590	175433686	244	63950										
KCNIP4	0	genome.wustl.edu	37	chr4	20852249	20852249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagctcaagggcttcaggccGatgcctgacggtggccatct	13	12	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	20852249	20852249	G	A	SNP	KCNIP4	ENST00000382150	human	ensembl	69_37n	-1	known	missense	c.142	p.R48W	1.000	prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	KCNIP4	HGNC	ENSG00000185774	57	0	0	34	13	27.66	-	-	-	A	20852249	G	A	20852249	3	1	727	1	0	0	0	0	1	0	0	0	8096	1057	37	1	575	1	KCNIP4	4	20852249	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5131659	20852249	170302027	245	63951										
PI4K2B	0	genome.wustl.edu	37	chr4	25258265	25258265	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaagtgccaaaagtgggtaGaaagtttcataggataggac	12	4	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	25258265	25258265	G	A	SNP	PI4K2B	ENST00000264864	human	ensembl	69_37n	1	known	missense	c.725	p.R242K	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210	46	0	0	58	19	24.36	-	-	-	A	25258265	G	A	25258265	3	1	727	1	0	0	0	0	1	0	0	0	11946	942	33	2	739	2	PI4K2B	4	25258265	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4406016	25258265	165896011	246	63952										
SEL1L3	0	genome.wustl.edu	37	chr4	25806285	25806285	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacgatagagctaatttggtGaagaccatcaatgctagaga	11	6	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	25806285	25806285	G	A	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.1654	p.H552Y	0.991	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	103	0	0	76	22	22.45	-	-	-	A	25806285	G	A	25806285	3	1	727	1	0	0	0	0	1	0	0	0	14100	1290	45	2	1804	2	SEL1L3	4	25806285	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	548020	25806285	165347991	247	63953										
ARAP2	0	genome.wustl.edu	37	chr4	36069753	36069753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctccaggcagttgaaactccGatgttttcggggtcgatttc	11	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	36069753	36069753	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.4891	p.R1631W	0.945	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	89	0	0	63	27	29.67	-	-	-	A	36069753	G	A	36069753	3	1	727	1	0	0	0	0	1	0	0	0	841	1057	37	1	227	1	ARAP2	4	36069753	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10263468	36069753	155084523	248	63954										
PGM2	0	genome.wustl.edu	37	chr4	37846059	37846059	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggtcatagctttgtgcagtCagctttcaaggcttttgacc	11	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	37846059	37846059	C	A	SNP	PGM2	ENST00000381967	human	ensembl	69_37n	1	known	nonsense	c.794	p.S265*	0.888	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299	120	0	0	85	10	10.53	-	-	-	A	37846059	C	A	37846059	4	1	727	1	0	0	0	0	0	1	0	0	11872	838	29	2	820	2	PGM2	4	37846059	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1776306	37846059	153308217	249	63955										
PDS5A	0	genome.wustl.edu	37	chr4	39915337	39915337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacagctaatcgctcttctcCatcattgctctaagaaggga	7	11	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	39915337	39915337	C	T	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	missense	c.886	p.G296R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	26	0	0	30	12	28.57	-	-	-	T	39915337	C	T	39915337	3	4	727	1	0	0	0	0	1	0	0	0	11764	603	21	4	3260	4	PDS5A	4	39915337	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2069278	39915337	151238939	250	63956										
RBM47	0	genome.wustl.edu	37	chr4	40440028	40440028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaggttgttcatggcatgcaCggcatcctcgcggctggtga	15	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	40440028	40440028	C	T	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	missense	c.883	p.V295M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	14	0	0	11	7	38.89	-	-	-	T	40440028	C	T	40440028	3	4	727	1	0	0	0	0	1	0	0	0	13224	536	19	1	914	1	RBM47	4	40440028	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	524691	40440028	150714248	251	63957										
PDGFRA	0	genome.wustl.edu	37	chr4	55141020	55141020	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atttatagaaaccgaggtatGaaattcgctggagggtcatt	11	5	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	55141020	55141020	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	1	known	missense	c.1666	p.E556K	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	45	0	0	32	7	17.95	-	-	-	A	55141020	G	A	55141020	3	1	727	1	0	0	0	0	1	0	0	0	11734	1291	45	2	1708	2	PDGFRA	4	55141020	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14700992	55141020	136013256	252	63958										
NMU	0	genome.wustl.edu	37	chr4	56475337	56475337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaagcaaagctcctccagtgCgttggatgcctaacagaaat	9	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	56475337	56475337	C	T	SNP	NMU	ENST00000264218	human	ensembl	69_37n	-1	known	missense	c.229	p.A77T	0.064	NULL	pfam_NMU_C,smart_NMU_C	-	no_errors	NMU	HGNC	ENSG00000109255	66	0	0	66	19	22.35	-	-	-	T	56475337	C	T	56475337	3	4	727	1	0	0	0	0	1	0	0	0	10577	768	27	1	319	1	NMU	4	56475337	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1334317	56475337	134678939	253	63959										
AMBN	0	genome.wustl.edu	37	chr4	71465264	71465264	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtctttagtattctagataCggctttggaaaatcatttaa	7	5	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	71465264	71465264	C	A	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	nonsense	c.195	p.Y65*	0.998	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	71	0	0	45	16	26.23	-	-	-	A	71465264	C	A	71465264	4	1	727	1	0	0	0	0	0	1	0	0	563	547	19	3	213	3	AMBN	4	71465264	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14989927	71465264	119689012	254	63960										
ENAM	0	genome.wustl.edu	37	chr4	71509721	71509721	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccaagttacccatcaggtCaaaaagaagcacatttattt	5	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	71509721	71509721	C	G	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.2578	p.Q860E	0.987	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	61	0	0	47	18	27.69	-	-	-	G	71509721	C	G	71509721	3	3	727	1	0	0	0	0	1	0	0	0	5149	827	29	2	2608	2	ENAM	4	71509721	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	44457	71509721	119644555	255	63961										
ANKRD17	0	genome.wustl.edu	37	chr4	74014745	74014745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccgctgtcaagaagtaacCtagctacttcaacatggcca	7	13	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	74014745	74014745	C	G	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.1352	p.R451T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	33	0	0	33	10	23.26	-	-	-	G	74014745	C	G	74014745	3	3	727	1	0	0	0	0	1	0	0	0	646	681	24	4	6567	4	ANKRD17	4	74014745	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2505024	74014745	117139531	256	63962										
RCHY1	0	genome.wustl.edu	37	chr4	76439444	76439444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtcatagtgctcgcagcccCgctgacctcgctcttgaccg	10	16	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	76439444	76439444	C	T	SNP	RCHY1	ENST00000324439	human	ensembl	69_37n	-1	known	missense	c.53	p.R18Q	0.998	NULL	pfam_Znf_CHY,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RCHY1	HGNC	ENSG00000163743	63	0	0	23	16	40	-	-	-	T	76439444	C	T	76439444	3	4	727	1	0	0	0	0	1	0	0	0	13260	652	23	1	768	1	RCHY1	4	76439444	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2424699	76439444	114714832	257	63963										
FRAS1	0	genome.wustl.edu	37	chr4	79410060	79410060	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtttgccaaggatttgctCctagtgaaggagaaggaggg	15	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	79410060	79410060	C	G	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	missense	c.3469	p.P1157A	0.997	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	66	0	0	66	19	22.35	-	-	-	G	79410060	C	G	79410060	3	3	727	1	0	0	0	0	1	0	0	0	6090	842	30	2	9093	2	FRAS1	4	79410060	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2970616	79410060	111744216	258	63964										
KLHL8	0	genome.wustl.edu	37	chr4	88085091	88085091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcattgccattatgaccacCaactgcaaagattttgccca	6	12	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	88085091	88085091	C	T	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.1678	p.G560S	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	89	0	0	44	20	31.25	-	-	-	T	88085091	C	T	88085091	3	4	727	1	0	0	0	0	1	0	0	0	8448	594	21	4	192	4	KLHL8	4	88085091	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8675031	88085091	103069185	259	63965										
KLHL8	0	genome.wustl.edu	37	chr4	88106843	88106843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accatcaaaatctctaatctCaatcagcgtttgcttggctt	5	11	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	88106843	88106843	C	G	SNP	KLHL8	ENST00000273963	human	ensembl	69_37n	-1	known	missense	c.325	p.E109Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332	35	0	0	28	7	20	-	-	-	G	88106843	C	G	88106843	3	3	727	1	0	0	0	0	1	0	0	0	8448	835	29	2	1569	2	KLHL8	4	88106843	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	21752	88106843	103047433	260	63966										
IBSP	0	genome.wustl.edu	37	chr4	88723881	88723881	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atttaaaacgatttccagttCaggtaaatatagaaattcat	5	5	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	88723881	88723881	C	T	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	1	known	nonsense	c.181	p.Q61*	0.995	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	40	0	0	41	9	18	-	-	-	T	88723881	C	T	88723881	4	4	727	1	0	0	0	0	0	1	0	0	7529	827	29	2	191	2	IBSP	4	88723881	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	617038	88723881	102430395	261	63967										
FAM13A	0	genome.wustl.edu	37	chr4	89668139	89668139	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttctgcagagccactttctCattagcaatctggtctttgg	8	10	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	89668139	89668139	C	G	SNP	FAM13A	ENST00000264344	human	ensembl	69_37n	-1	known	missense	c.2410	p.E804Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	114	0	0	53	42	44.21	-	-	-	G	89668139	C	G	89668139	3	3	727	1	0	0	0	0	1	0	0	0	5492	835	29	2	685	2	FAM13A	4	89668139	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	944258	89668139	101486137	262	63968										
MTTP	0	genome.wustl.edu	37	chr4	100521726	100521726	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgcctttttttatagacctCagctggtggatgctgtcacc	9	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	100521726	100521726	C	T	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	nonsense	c.1072	p.Q358*	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	66	0	0	50	14	21.21	-	-	-	T	100521726	C	T	100521726	4	4	727	1	0	0	0	0	0	1	0	0	10036	827	29	2	1106	2	MTTP	4	100521726	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10853587	100521726	90632550	263	63969										
CENPE	0	genome.wustl.edu	37	chr4	104066736	104066736	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttttgaatggttgatatttCagtttccttctctgaaagat	7	6	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	104066736	104066736	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.4516	p.E1506Q	0.539	superfamily_Signal_recog_particl_SRP54_hlx	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	133	0	0	107	20	15.75	-	-	-	G	104066736	C	G	104066736	3	3	727	1	0	0	0	0	1	0	0	0	3259	835	29	2	3665	2	CENPE	4	104066736	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3545010	104066736	87087540	264	63970										
CENPE	0	genome.wustl.edu	37	chr4	104067141	104067141	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caatccgagcatttctatttCtatccttagtagtgctgaat	6	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	104067141	104067141	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.4258	p.E1420Q	0.090	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	124	0	0	108	19	14.84	-	-	-	G	104067141	C	G	104067141	3	3	727	1	0	0	0	0	1	0	0	0	3259	922	32	2	3927	2	CENPE	4	104067141	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	405	104067141	87087135	265	63971										
TACR3	0	genome.wustl.edu	37	chr4	104579457	104579457	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggttttggaataaagacactGagggaaggcaagtagaaatg	14	3	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	104579457	104579457	G	A	SNP	TACR3	ENST00000304883	human	ensembl	69_37n	-1	known	nonsense	c.652	p.Q218*	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NK1_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836	82	0	0	52	12	18.75	-	-	-	A	104579457	G	A	104579457	4	1	727	1	0	0	0	0	0	1	0	0	15599	1299	45	2	761	2	TACR3	4	104579457	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	512316	104579457	86574819	266	63972										
TET2	0	genome.wustl.edu	37	chr4	106156375	106156375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttcagaaggaaaaagcactCtgaatggtggagttttagaa	11	5	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	106156375	106156375	C	G	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.1276	p.L426V	0.990	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	99	0	0	66	21	24.14	-	-	-	G	106156375	C	G	106156375	3	3	727	1	0	0	0	0	1	0	0	0	15865	912	32	2	1278	2	TET2	4	106156375	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1576918	106156375	84997901	267	63973										
TET2	0	genome.wustl.edu	37	chr4	106190766	106190766	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acacacacttttatttttcaGattgaatatgaacacagagc	5	8	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	106190766	106190766	G	C	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	splice_site	c.4045-1	e7-1	1.000	-	-	-	no_errors	TET2	HGNC	ENSG00000168769	48	0	0	23	12	34.29	-	-	-	C	106190766	G	C	106190766	5	2	727	1	0	0	0	0	0	0	1	0	15865	956	33	2	4159	2	TET2	4	106190766	Splice_Site	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	34391	106190766	84963510	268	63974										
INTS12	0	genome.wustl.edu	37	chr4	106604111	106604111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctggaactaaactacttgGactaggaagacctactttgc	8	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	106604111	106604111	G	A	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	missense	c.1168	p.P390S	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	88	0	0	77	25	24.51	-	-	-	A	106604111	G	A	106604111	3	1	727	1	0	0	0	0	1	0	0	0	7831	1174	41	2	224	2	INTS12	4	106604111	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	413345	106604111	84550165	269	63975										
CCDC109B	0	genome.wustl.edu	37	chr4	110603795	110603795	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catgaaatctttggttcacaGactatttacaatcttgcatt	5	8	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	110603795	110603795	G	A	SNP	CCDC109B	ENST00000394650	human	ensembl	69_37n	1	known	missense	c.509	p.R170K	0.994	pfam_Coiled-coil-dom_prot_109_C	pfam_Coiled-coil-dom_prot_109_C	-	no_errors	CCDC109B	HGNC	ENSG00000005059	45	0	0	31	14	31.11	-	-	-	A	110603795	G	A	110603795	3	1	727	1	0	0	0	0	1	0	0	0	2770	942	33	2	527	2	CCDC109B	4	110603795	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3999684	110603795	80550481	270	63976										
ANK2	0	genome.wustl.edu	37	chr4	114253195	114253195	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttggtcagccgcattcttCagctggggcctcctggaacc	12	13	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	114253195	114253195	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	nonsense	c.3193	p.Q1065*	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	67	0	0	46	6	11.54	-	-	-	T	114253195	C	T	114253195	4	4	727	1	0	0	0	0	0	1	0	0	621	827	29	2	3368	2	ANK2	4	114253195	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3649400	114253195	76901081	271	63977										
METTL14	0	genome.wustl.edu	37	chr4	119609136	119609136	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaatagcaaagatgagcagaGagaaattgctgaaacaagag	11	4	0	6			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	119609136	119609136	G	A	SNP	METTL14	ENST00000388822	human	ensembl	69_37n	1	known	missense	c.125	p.R42K	1.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388	55	0	0	45	12	21.05	-	-	-	A	119609136	G	A	119609136	3	1	727	1	0	0	0	0	1	0	0	0	9569	942	33	2	131	2	METTL14	4	119609136	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5355941	119609136	71545140	272	63978										
METTL14	0	genome.wustl.edu	37	chr4	119609147	119609147	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgagcagagagaaattgctGaaacaagagaaacttgcagg	12	5	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	119609147	119609147	G	A	SNP	METTL14	ENST00000388822	human	ensembl	69_37n	1	known	missense	c.136	p.E46K	1.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388	46	0	0	42	10	19.23	-	-	-	A	119609147	G	A	119609147	3	1	727	1	0	0	0	0	1	0	0	0	9569	1291	45	2	142	2	METTL14	4	119609147	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11	119609147	71545129	273	63979										
SYNPO2	0	genome.wustl.edu	37	chr4	119951999	119951999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attgcaggaggccaaaaggaGaagcacgacaaaacccatgt	11	9	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	119951999	119951999	G	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.2069	p.R690K	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	59	0	0	61	15	19.74	-	-	-	A	119951999	G	A	119951999	3	1	727	1	0	0	0	0	1	0	0	0	15549	942	33	2	2083	2	SYNPO2	4	119951999	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	342852	119951999	71202277	274	63980										
KIAA1109	0	genome.wustl.edu	37	chr4	123132205	123132205	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaactttctccagattctcaGataactctctatggacctct	5	12	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	123132205	123132205	G	C	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.2202	p.Q734H	0.949	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	89	0	0	67	36	34.95	-	-	-	C	123132205	G	C	123132205	3	2	727	1	0	0	0	0	1	0	0	0	8260	933	33	2	2272	2	KIAA1109	4	123132205	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3180206	123132205	68022071	275	63981										
BBS12	0	genome.wustl.edu	37	chr4	123664136	123664136	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttctcattgagggtgacctCacagagaattaccgccacct	9	12	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	123664136	123664136	C	T	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	1	known	silent	c.1089	p.L363	0.991	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	66	0	0	57	27	31.76	-	-	-	T	123664136	C	T	123664136	2	4	727	1	0	0	0	0	0	0	0	1	1341	813	29	2		2	BBS12	4	123664136	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	531931	123664136	67490140	276	63982										
LRBA	0	genome.wustl.edu	37	chr4	151511904	151511904	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttctcatccacggatgacaGagtatcatcatcgccttcca	6	13	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	151511904	151511904	G	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	silent	c.6187	p.L2063	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	84	0	0	53	9	14.52	-	-	-	A	151511904	G	A	151511904	2	1	727	1	0	0	0	0	0	0	0	1	8997	933	33	2		2	LRBA	4	151511904	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	27847768	151511904	39642372	277	63983										
GLRB	0	genome.wustl.edu	37	chr4	157999256	157999256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctattctaaggaaaagtcttCaaagaaagggaaggggaaaa	11	4	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	157999256	157999256	C	T	SNP	GLRB	ENST00000264428	human	ensembl	69_37n	1	known	missense	c.80	p.S27L	1.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738	95	0	0	70	27	27.55	-	-	-	T	157999256	C	T	157999256	3	4	727	1	0	0	0	0	1	0	0	0	6510	838	29	2	82	2	GLRB	4	157999256	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6487352	157999256	33155020	278	63984										
DDX60L	0	genome.wustl.edu	37	chr4	169305835	169305835	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgcaggaccagggttatgctGagagggaactgtcctctcag	14	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	169305835	169305835	G	A	SNP	DDX60L	ENST00000260184	human	ensembl	69_37n	-1	known	silent	c.4044	p.L1348	0.027	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	72	0	0	43	18	29.51	-	-	-	A	169305835	G	A	169305835	2	1	727	1	0	0	0	0	0	0	0	1	4410	1277	45	2		2	DDX60L	4	169305835	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11306579	169305835	21848441	279	63985										
CCDC110	0	genome.wustl.edu	37	chr4	186380336	186380336	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtttcaactttctgtatgaGagattgtgtggtaaagataa	10	3	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	4	186380336	186380336	G	A	SNP	CCDC110	ENST00000307588	human	ensembl	69_37n	-1	known	missense	c.1405	p.L469F	1.000	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491	19	0	0	24	16	40	-	-	-	A	186380336	G	A	186380336	3	1	727	1	0	0	0	0	1	0	0	0	2772	942	33	2	1104	2	CCDC110	4	186380336	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	17074501	186380336	4773940	280	63986										
TRIO	0	genome.wustl.edu	37	chr5	14465790	14465790	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgacttttggaagctgctCtgtgttgctacttgcagatg	11	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	14465790	14465790	C	G	SNP	TRIO	ENST00000515710	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIO	HGNC	ENSG00000038382	51	0	0	44	7	13.73	-	-	-	G	14465790	C	G	14465790	1	3	727	0	1	0	0	0	0	0	0	0	16648	928	32	2		2	TRIO	5	14465790	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		14465790	166449470	281	63987										
TRIO	0	genome.wustl.edu	37	chr5	14480117	14480117	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgaagtatcagctgttactGaaggtgaggaggtggcggga	17	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	14480117	14480117	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	silent	c.6333	p.L2111	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	67	0	0	48	16	25	-	-	-	A	14480117	G	A	14480117	2	1	727	1	0	0	0	0	0	0	0	1	16648	1277	45	2		2	TRIO	5	14480117	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14327	14480117	166435143	282	63988										
PDZD2	0	genome.wustl.edu	37	chr5	32048704	32048704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctgatggtgcggaatgggGacccccggatccggatgttg	17	9	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	32048704	32048704	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.1579	p.D527N	0.999	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	36	0	0	33	6	15.38	-	-	-	A	32048704	G	A	32048704	3	1	727	1	0	0	0	0	1	0	0	0	11774	1174	41	2	1605	2	PDZD2	5	32048704	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	17568587	32048704	148866556	283	63989										
EGFLAM	0	genome.wustl.edu	37	chr5	38418272	38418272	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaaaccgaggctttcaaggCtgtgtgcagtcgctcgctgt	12	11	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	38418272	38418272	C	A	SNP	EGFLAM	ENST00000354891	human	ensembl	69_37n	1	known	silent	c.1599	p.G533	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	68	0	0	46	20	30.3	-	-	-	A	38418272	C	A	38418272	2	1	727	1	0	0	0	0	0	0	0	1	5001	784	28	4		4	EGFLAM	5	38418272	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6369568	38418272	142496988	284	63990										
C7	0	genome.wustl.edu	37	chr5	40981496	40981496	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttcacttacttttccagctGagagcagcaaatgtgtctgc	8	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	40981496	40981496	G	A	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.2353	p.E785K	0.370	smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	54	0	0	41	9	18	-	-	-	A	40981496	G	A	40981496	3	1	727	1	0	0	0	0	1	0	0	0	2398	1291	45	2	2423	2	C7	5	40981496	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2563224	40981496	139933764	285	63991										
HEATR7B2	0	genome.wustl.edu	37	chr5	41065478	41065478	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcaagcacaacgaattcatCtggtagctctaagatcctga	9	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	41065478	41065478	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.316	p.D106N	0.090	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	69	0	0	61	7	10.29	-	-	-	T	41065478	C	T	41065478	3	4	727	1	0	0	0	0	1	0	0	0	7086	913	32	2	4597	2	HEATR7B2	5	41065478	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	83982	41065478	139849782	286	63992										
ISL1	0	genome.wustl.edu	37	chr5	50685717	50685717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcggtgcaaggacaagaagcGaagcatcatgatgaagcaac	13	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	50685717	50685717	G	A	SNP	ISL1	ENST00000230658	human	ensembl	69_37n	1	known	missense	c.716	p.R239Q	0.997	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC	ENSG00000016082	38	0	0	25	6	19.35	-	-	-	A	50685717	G	A	50685717	3	1	727	1	0	0	0	0	1	0	0	0	7910	1058	37	1	730	1	ISL1	5	50685717	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9620239	50685717	130229543	287	63993										
ITGA2	0	genome.wustl.edu	37	chr5	52370939	52370939	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcttcaaaaccttcagaatCaggcgtctctcagtttccaa	5	12	6	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	52370939	52370939	C	G	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	missense	c.2713	p.Q905E	0.930	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	83	0	0	85	39	31.45	-	-	-	G	52370939	C	G	52370939	3	3	727	1	0	0	0	0	1	0	0	0	7929	827	29	2	2799	2	ITGA2	5	52370939	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1685222	52370939	128544321	288	63994										
DDX4	0	genome.wustl.edu	37	chr5	55082490	55082490	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgcgctcaaacagggtctGggaagactgtaagtctttcc	11	10	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	55082490	55082490	G	T	SNP	DDX4	ENST00000505374	human	ensembl	69_37n	1	known	missense	c.1009	p.G337W	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	35	0	0	24	11	31.43	-	-	-	T	55082490	G	T	55082490	3	4	727	1	0	0	0	0	1	0	0	0	4391	1348	47	4	1100	4	DDX4	5	55082490	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2711551	55082490	125832770	289	63995										
SLC30A5	0	genome.wustl.edu	37	chr5	68414432	68414432	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctagattgattgatcctccaGaattagacactcacatgtta	6	9	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	68414432	68414432	G	A	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.1546	p.E516K	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	210	0	0	139	54	27.98	-	-	-	A	68414432	G	A	68414432	3	1	727	1	0	0	0	0	1	0	0	0	14647	943	33	2	1680	2	SLC30A5	5	68414432	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	13331942	68414432	112500828	290	63996										
OCLN	0	genome.wustl.edu	37	chr5	68800079	68800079	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgacaatcagccatgtcatCcaggcctcttgaaagtccac	7	13	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	68800079	68800079	C	G	SNP	OCLN	ENST00000355237	human	ensembl	69_37n	1	known	missense	c.8	p.S3C	0.367	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_MARVEL-like_dom,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822	71	0	0	41	21	33.87	-	-	-	G	68800079	C	G	68800079	3	3	727	1	0	0	0	0	1	0	0	0	10893	855	30	2	10	2	OCLN	5	68800079	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	385647	68800079	112115181	291	63997										
HEXB	0	genome.wustl.edu	37	chr5	74017042	74017042	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acagcaatctgtactacaatCaactttattttgaaatcatg	4	8	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	74017042	74017042	C	G	SNP	HEXB	ENST00000513539	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.616	-	-	-	no_errors	HEXB	HGNC	ENSG00000049860	25	0	0	50	10	16.67	-	-	-	G	74017042	C	G	74017042	1	3	727	0	1	0	0	0	0	0	0	0	7125	841	29	2		2	HEXB	5	74017042	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5216963	74017042	106898218	292	63998										
PDE8B	0	genome.wustl.edu	37	chr5	76649195	76649195	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attaggcattttgtctcgctCaagaaactgtgttgtaccac	8	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	76649195	76649195	C	G	SNP	PDE8B	ENST00000264917	human	ensembl	69_37n	1	known	silent	c.1131	p.L377	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,prints_PDEase,pfscan_PAS,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231	113	0	0	84	23	21.5	-	-	-	G	76649195	C	G	76649195	2	3	727	1	0	0	0	0	0	0	0	1	11727	813	29	2		2	PDE8B	5	76649195	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2632153	76649195	104266065	293	63999										
CMYA5	0	genome.wustl.edu	37	chr5	79025052	79025052	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggcaacagaaaaagaaattCttttgaatcccaagatgttc	7	7	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	79025052	79025052	C	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.464	p.S155C	0.733	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	44	0	0	57	14	19.72	-	-	-	G	79025052	C	G	79025052	3	3	727	1	0	0	0	0	1	0	0	0	3620	913	32	2	470	2	CMYA5	5	79025052	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2375857	79025052	101890208	294	64000										
CMYA5	0	genome.wustl.edu	37	chr5	79030755	79030755	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaaccagtgtctggcctatCagtggaacaggtgaagtcag	13	8	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	79030755	79030755	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.6167	p.S2056L	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	16	0	0	12	13	52	-	-	-	T	79030755	C	T	79030755	3	4	727	1	0	0	0	0	1	0	0	0	3620	838	29	2	6173	2	CMYA5	5	79030755	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5703	79030755	101884505	295	64001										
CMYA5	0	genome.wustl.edu	37	chr5	79031127	79031127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggaatttcatctttcaaatCgtggatgtccagcttgtttt	8	7	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	79031127	79031127	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.6539	p.S2180L	0.983	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	13	0	0	4	6	60	-	-	-	T	79031127	C	T	79031127	3	4	727	1	0	0	0	0	1	0	0	0	3620	893	31	1	6545	1	CMYA5	5	79031127	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	372	79031127	101884133	296	64002										
MSH3	0	genome.wustl.edu	37	chr5	80149949	80149949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgttttcatcttgcttgtagGatgggtgctgcagacaatat	11	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	80149949	80149949	G	T	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	missense	c.2814	p.R938S	1.000	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	66	0	0	50	14	21.88	-	-	-	T	80149949	G	T	80149949	3	4	727	1	0	0	0	0	1	0	0	0	9943	1188	41	2	2896	2	MSH3	5	80149949	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1118822	80149949	100765311	297	64003										
TTC37	0	genome.wustl.edu	37	chr5	94803617	94803617	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atataagtgtctcagtaggtAccaacgtgcagttgatgcaa	10	7	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	94803617	94803617	A	G	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.4573	p.Y1525H	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	99	0	0	69	10	12.66	-	-	-	G	94803617	A	G	94803617	3	3	727	1	0	0	0	0	1	0	0	0	16802	391	14	5	129	5	TTC37	5	94803617	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	14653668	94803617	86111643	298	64004										
FER	0	genome.wustl.edu	37	chr5	108168544	108168544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatgcagaggacttgaactCtggacctttacacaggctca	9	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	108168544	108168544	C	G	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	missense	c.281	p.S94C	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	49	0	0	49	20	28.99	-	-	-	G	108168544	C	G	108168544	3	3	727	1	0	0	0	0	1	0	0	0	5859	913	32	2	287	2	FER	5	108168544	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	13364927	108168544	72746716	299	64005										
APC	0	genome.wustl.edu	37	chr5	112128144	112128144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttcttgttttattttagcGaagaatagccagaattcagc	8	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	112128144	112128144	G	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.647	p.R216Q	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	50	0	0	52	11	17.46	-	-	-	A	112128144	G	A	112128144	3	1	727	1	0	0	0	0	1	0	0	0	764	1072	37	1	669	1	APC	5	112128144	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3959600	112128144	68787116	300	64006										
APC	0	genome.wustl.edu	37	chr5	112175084	112175084	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caatacagacttattgtgtaGaagatactccaatatgtttt	6	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	112175084	112175084	G	C	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.3793	p.E1265Q	1.000	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	36	0	0	21	12	36.36	-	-	-	C	112175084	G	C	112175084	3	2	727	1	0	0	0	0	1	0	0	0	764	943	33	2	3851	2	APC	5	112175084	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	46940	112175084	68740176	301	64007										
APC	0	genome.wustl.edu	37	chr5	112175457	112175457	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catgtttagcagatgtacttCtgtcagttcacttgatagtt	8	7	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	112175457	112175457	C	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.4166	p.S1389F	1.000	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	44	0	0	38	15	27.78	-	-	-	T	112175457	C	T	112175457	3	4	727	1	0	0	0	0	1	0	0	0	764	913	32	2	4224	2	APC	5	112175457	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	373	112175457	68739803	302	64008										
TSSK1B	0	genome.wustl.edu	37	chr5	112769588	112769588	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtgcctggggctgtgcctCtccctcaggctccagcttgg	13	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	112769588	112769588	C	G	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	missense	c.949	p.E317Q	0.010	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	75	0	0	40	15	27.27	-	-	-	G	112769588	C	G	112769588	3	3	727	1	0	0	0	0	1	0	0	0	16764	922	32	2	158	2	TSSK1B	5	112769588	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	594131	112769588	68145672	303	64009										
PRR16	0	genome.wustl.edu	37	chr5	120022150	120022150	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atggctattgtcctgactgtGatacccggtataacataaaa	8	8	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	120022150	120022150	G	A	SNP	PRR16	ENST00000407149	human	ensembl	69_37n	1	known	missense	c.661	p.D221N	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838	36	0	0	27	9	25	-	-	-	A	120022150	G	A	120022150	3	1	727	1	0	0	0	0	1	0	0	0	12670	1290	45	2	598	2	PRR16	5	120022150	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7252562	120022150	60893110	304	64010										
LOX	0	genome.wustl.edu	37	chr5	121412813	121412813	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccaccgggactgcagagtgGagcggaggacagcaagagaa	16	10	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	121412813	121412813	G	C	SNP	LOX	ENST00000513319	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LOX	HGNC	ENSG00000113083	10	0	0	6	4	40	-	-	-	C	121412813	G	C	121412813	1	2	727	0	1	0	0	0	0	0	0	0	8964	1189	41	2		2	LOX	5	121412813	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1390663	121412813	59502447	305	64011										
FBN2	0	genome.wustl.edu	37	chr5	127712538	127712538	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catgttggtagttgtacattCatcatgatctgcagaagagg	11	6	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	127712538	127712538	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.1858	p.E620K	1.000	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	46	0	0	51	22	30.14	-	-	-	T	127712538	C	T	127712538	3	4	727	1	0	0	0	0	1	0	0	0	5749	835	29	2	7088	2	FBN2	5	127712538	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6299725	127712538	53202722	306	64012										
FAM13B	0	genome.wustl.edu	37	chr5	137290027	137290027	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagctgagcttctccagactCagagtcctcctgccaagact	8	15	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	137290027	137290027	C	T	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.1480	p.E494K	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	30	0	0	19	10	34.48	-	-	-	T	137290027	C	T	137290027	3	4	727	1	0	0	0	0	1	0	0	0	5493	835	29	2	1307	2	FAM13B	5	137290027	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	9577489	137290027	43625233	307	64013										
PSD2	0	genome.wustl.edu	37	chr5	139221911	139221911	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatgaaaatcaaagtgggctCagatgatctggagcggattg	13	5	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	139221911	139221911	C	G	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	nonsense	c.2168	p.S723*	0.993	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	85	0	0	49	12	19.67	-	-	-	G	139221911	C	G	139221911	4	3	727	1	0	0	0	0	0	1	0	0	12727	838	29	2	2222	2	PSD2	5	139221911	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1931884	139221911	41693349	308	64014										
ANKHD1	0	genome.wustl.edu	37	chr5	139864797	139864797	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctggcagttgttgagcttctCttggctcatggggctgaccc	13	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	139864797	139864797	C	G	SNP	ANKHD1	ENST00000246149	human	ensembl	69_37n	1	novel	missense	c.446	p.S149C	0.592	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKHD1	HGNC	ENSG00000131503	71	0	0	32	16	33.33	-	-	-	G	139864797	C	G	139864797	3	3	727	1	0	0	0	0	1	0	0	0	628	900	32	2	2114	2	ANKHD1	5	139864797	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	642886	139864797	41050463	309	64015										
PCDHA3	0	genome.wustl.edu	37	chr5	140181299	140181299	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgttgttgacttacagtcttGattccactgaatattttacc	6	9	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	140181299	140181299	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.517	p.D173N	0.052	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	44	0	0	31	18	36	-	-	-	A	140181299	G	A	140181299	3	1	727	1	0	0	0	0	1	0	0	0	11598	1290	45	2	519	2	PCDHA3	5	140181299	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	316502	140181299	40733961	310	64016										
PCDHGA2	0	genome.wustl.edu	37	chr5	140719182	140719182	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccacctcgttctcgtggcttCtgatgggggtgacccagtgc	13	13	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	140719182	140719182	C	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.644	p.S215Y	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	41	0	0	33	8	19.05	-	-	-	A	140719182	C	A	140719182	3	1	727	1	0	0	0	0	1	0	0	0	11627	913	32	2	646	2	PCDHGA2	5	140719182	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	537883	140719182	40196078	311	64017										
PCDHGA3	0	genome.wustl.edu	37	chr5	140723819	140723819	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtctccagaggtaggacgcaGcttttctctctgaatccgca	10	12	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	140723819	140723819	G	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.219	p.Q73H	0.990	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	36	0	0	23	11	32.35	-	-	-	T	140723819	G	T	140723819	3	4	727	1	0	0	0	0	1	0	0	0	11628	962	34	4	221	4	PCDHGA3	5	140723819	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4637	140723819	40191441	312	64018										
PCDHGA8	0	genome.wustl.edu	37	chr5	140772611	140772611	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggacgcagctctttgctctGaacccgcgcagcggcagctt	12	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	140772611	140772611	G	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	69_37n	1	known	silent	c.231	p.L77	0.971	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	28	0	0	14	6	30	-	-	-	A	140772611	G	A	140772611	2	1	727	1	0	0	0	0	0	0	0	1	11633	1277	45	2		2	PCDHGA8	5	140772611	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	48792	140772611	40142649	313	64019										
PDE6A	0	genome.wustl.edu	37	chr5	149276340	149276340	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccatacacctctctggttttCtgccaggacccaaaatggca	7	14	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	149276340	149276340	C	T	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	splice_site	c.1408-1	e11-1	1.000	-	-	-	no_errors	PDE6A	HGNC	ENSG00000132915	69	0	0	30	14	31.11	-	-	-	T	149276340	C	T	149276340	5	4	727	1	0	0	0	0	0	0	1	0	11718	927	32	2	1223	2	PDE6A	5	149276340	Splice_Site	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8503729	149276340	31638920	314	64020										
ARSI	0	genome.wustl.edu	37	chr5	149676953	149676953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acccccattaaagtcaggatGagcccgggggttctcagctg	12	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	149676953	149676953	G	A	SNP	ARSI	ENST00000328668	human	ensembl	69_37n	-1	known	missense	c.1534	p.H512Y	1.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876	62	0	0	42	9	17.65	-	-	-	A	149676953	G	A	149676953	3	1	727	1	0	0	0	0	1	0	0	0	998	1290	45	2	179	2	ARSI	5	149676953	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	400613	149676953	31238307	315	64021										
ADAM19	0	genome.wustl.edu	37	chr5	156997987	156997987	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggctgccttcctcacttccTcctgccaatacaagatgcaa	7	15	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	156997987	156997987	T	C	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	silent	c.102	p.R34	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	72	0	0	51	19	27.14	-	-	-	C	156997987	T	C	156997987	2	2	727	1	0	0	0	0	0	0	0	1	240	1565	54	5		5	ADAM19	5	156997987	Silent	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	7321034	156997987	23917273	316	64022										
PANK3	0	genome.wustl.edu	37	chr5	167995968	167995968	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaagtacgagagctttactaGagttcccccaatgtccatgc	8	11	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	167995968	167995968	G	A	SNP	PANK3	ENST00000239231	human	ensembl	69_37n	-1	known	silent	c.64	p.L22	0.759	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK3	HGNC	ENSG00000120137	45	0	0	50	10	16.67	-	-	-	A	167995968	G	A	167995968	2	1	727	1	0	0	0	0	0	0	0	1	11491	933	33	2		2	PANK3	5	167995968	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10997981	167995968	12919292	317	64023										
ARL10	0	genome.wustl.edu	37	chr5	175795857	175795857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actggaaggagtttgtgagcGaggtggatgtgctggtgttt	18	3	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	175795857	175795857	G	A	SNP	ARL10	ENST00000310389	human	ensembl	69_37n	1	known	missense	c.433	p.E145K	0.969	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414	63	0	0	41	15	26.32	-	-	-	A	175795857	G	A	175795857	3	1	727	1	0	0	0	0	1	0	0	0	928	1059	37	1	443	1	ARL10	5	175795857	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7799889	175795857	5119403	318	64024										
TMED9	0	genome.wustl.edu	37	chr5	177022334	177022334	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggtgctgtggtggtccattCtgcagaccctcatcctcgtg	13	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	5	177022334	177022334	C	T	SNP	TMED9	ENST00000332598	human	ensembl	69_37n	1	known	silent	c.625	p.L209	1.000	pfam_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED9	HGNC	ENSG00000184840	32	0	0	13	7	35	-	-	-	T	177022334	C	T	177022334	2	4	727	1	0	0	0	0	0	0	0	1	16107	912	32	2		2	TMED9	5	177022334	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1226477	177022334	3892926	319	64025										
TFAP2A	0	genome.wustl.edu	37	chr6	10398657	10398657	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgggaggagagcctcactttCtgtgcttctcctctttgtca	10	12	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	10398657	10398657	C	T	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.1307	p.R436K	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	54	0	0	30	6	16.67	-	-	-	T	10398657	C	T	10398657	3	4	727	1	0	0	0	0	1	0	0	0	15882	913	32	2	10	2	TFAP2A	6	10398657	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		10398657	160716410	320	64026										
NEDD9	0	genome.wustl.edu	37	chr6	11190945	11190945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acagtgaggactccttggagGaggtggaagacgtggacatg	17	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	11190945	11190945	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.1157	p.S386F	1.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	48	0	0	23	8	25	-	-	-	A	11190945	G	A	11190945	3	1	727	1	0	0	0	0	1	0	0	0	10385	1174	41	2	1359	2	NEDD9	6	11190945	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	792288	11190945	159924122	321	64027										
NUP153	0	genome.wustl.edu	37	chr6	17616916	17616916	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtagtgctgctgccaaactgGaaagccgaacctgcaatagt	11	10	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	17616916	17616916	G	C	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.4278	p.F1426L	1.000	pfam_Retro-transposon_transp_CS	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	99	0	0	87	23	20.72	-	-	-	C	17616916	G	C	17616916	3	2	727	1	0	0	0	0	1	0	0	0	10828	1165	41	2	250	2	NUP153	6	17616916	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6425971	17616916	153498151	322	64028										
DEK	0	genome.wustl.edu	37	chr6	18249944	18249944	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgtttttcttttcatcttCatcactactagattcatctg	3	10	7	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	18249944	18249944	C	T	SNP	DEK	ENST00000397239	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	1.000	NULL	pfam_DEK_C,pfam_SAP_DNA-bd,smart_SAP_DNA-bd	-	no_errors	DEK	HGNC	ENSG00000124795	173	0	0	104	34	24.64	-	-	-	T	18249944	C	T	18249944	3	4	727	1	0	0	0	0	1	0	0	0	4460	835	29	2	447	2	DEK	6	18249944	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	633028	18249944	152865123	323	64029										
FAM65B	0	genome.wustl.edu	37	chr6	24843212	24843212	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcctctaagcttccatctaGaaaggatctgcagccttcag	7	12	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	24843212	24843212	G	C	SNP	FAM65B	ENST00000259698	human	ensembl	69_37n	-1	known	missense	c.1798	p.L600V	0.377	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913	79	0	0	46	25	35.21	-	-	-	C	24843212	G	C	24843212	3	2	727	1	0	0	0	0	1	0	0	0	5645	933	33	2	1458	2	FAM65B	6	24843212	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6593268	24843212	146271855	324	64030										
LRRC16A	0	genome.wustl.edu	37	chr6	25471441	25471441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgagggtggtgagtaggtcCaatcgactggaagaattggt	16	4	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	25471441	25471441	C	T	SNP	LRRC16A	ENST00000377969	human	ensembl	69_37n	1	known	silent	c.252	p.S84	1.000	NULL	NULL	-	no_errors	LRRC16A	HGNC	ENSG00000079691	107	0	0	74	26	25.74	-	-	-	T	25471441	C	T	25471441	2	4	727	1	0	0	0	0	0	0	0	1	9037	581	21	4		4	LRRC16A	6	25471441	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	628229	25471441	145643626	325	64031										
NKAPL	0	genome.wustl.edu	37	chr6	28228226	28228226	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgactgcgtaaggagaaccaGatctacagtgctgatgagaa	12	8	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	28228226	28228226	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	69_37n	1	known	silent	c.1077	p.Q359	1.000	pfam_DUF926	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134	126	0	0	65	15	18.52	-	-	-	A	28228226	G	A	28228226	2	1	727	1	0	0	0	0	0	0	0	1	10512	933	33	2		2	NKAPL	6	28228226	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2756785	28228226	142886841	326	64032										
POU5F1	0	genome.wustl.edu	37	chr6	31133802	31133802	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaattgctcgagttctttcTgcagagctttgatgtcctgg	10	9	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	31133802	31133802	T	A	SNP	POU5F1	ENST00000259915	human	ensembl	69_37n	-1	known	missense	c.428	p.Q143L	0.995	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531	107	0	0	88	12	12	-	-	-	A	31133802	T	A	31133802	3	1	727	1	0	0	0	0	1	0	0	0	12354	1580	55	5	670	5	POU5F1	6	31133802	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	2905576	31133802	139981265	327	64033										
HLA-DQA2	0	genome.wustl.edu	37	chr6	32709262	32709262	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgctgggggccctcgccctGactgccgtgatgagcccctg	14	16	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	32709262	32709262	G	A	SNP	HLA-DQA2	ENST00000374940	human	ensembl	69_37n	1	known	silent	c.42	p.L14	0.191	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541	119	0	0	85	28	24.78	-	-	-	A	32709262	G	A	32709262	2	1	727	1	0	0	0	0	0	0	0	1	7256	1277	45	2		2	HLA-DQA2	6	32709262	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1575460	32709262	138405805	328	64034										
KIFC1	0	genome.wustl.edu	37	chr6	33377466	33377466	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctcaggccaacaggaagtGaagacggatccagatctgtg	13	9	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	33377466	33377466	G	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	nonstop	c.2021	p.*674L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	58	0	0	23	9	28.12	-	-	-	T	33377466	G	T	33377466	4	4	727	1	0	0	0	0	0	0	0	0	8364	1285	45	2	2063	2	KIFC1	6	33377466	Nonstop_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	668204	33377466	137737601	329	64035										
FKBP5	0	genome.wustl.edu	37	chr6	35588008	35588008	+	Silent	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaatggcatatctctcctttCttcatggtagccaccccaat							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	35588008	35588008	C	T	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	silent	c.294	p.K98	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	91	0	0	65	15	18.52	-	-	-	T	35588008	C	T	35588008	2	4	727	1	0	0	0	0	0	0	0	1	5957	912	32	2		2	FKBP5	6	35588008	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2210542	35588008	135527059	330	64036	469	2								
FKBP5	0	genome.wustl.edu	37	chr6	35588011	35588011	+	Missense_Mutation	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggcatatctctcctttcttCatggtagccaccccaatgtc							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	35588011	35588011	C	T	SNP	FKBP5	ENST00000337746	human	ensembl	69_37n	-1	known	missense	c.291	p.M97I	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060	92	0	0	65	16	19.75	-	-	-	T	35588011	C	T	35588011	3	4	727	1	0	0	0	0	1	0	0	0	5957	826	29	2	1172	2	FKBP5	6	35588011	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3	35588011	135527056	331	64037	469	2								
SLC26A8	0	genome.wustl.edu	37	chr6	35918970	35918970	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgagtaggtttcccgtatCactgtctcggattcatcgat	9	10	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	35918970	35918970	C	T	SNP	SLC26A8	ENST00000355574	human	ensembl	69_37n	-1	known	silent	c.2442	p.V814	0.999	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053	93	0	0	40	12	22.64	-	-	-	T	35918970	C	T	35918970	2	4	727	1	0	0	0	0	0	0	0	1	14612	813	29	2		2	SLC26A8	6	35918970	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	330959	35918970	135196097	332	64038										
KCTD20	0	genome.wustl.edu	37	chr6	36446965	36446965	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agggagagtatgagattgctGaaggcatcagtgcaactgta	14	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	36446965	36446965	G	A	SNP	KCTD20	ENST00000373731	human	ensembl	69_37n	1	known	missense	c.502	p.E168K	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078	52	0	0	30	17	36.17	-	-	-	A	36446965	G	A	36446965	3	1	727	1	0	0	0	0	1	0	0	0	8162	1291	45	2	512	2	KCTD20	6	36446965	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	527995	36446965	134668102	333	64039										
DNAH8	0	genome.wustl.edu	37	chr6	38885163	38885163	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaatcttgctgtaagccatCatggggagagtcattaaagg	11	6	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	38885163	38885163	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	missense	c.9638	p.S3213L	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	63	0	0	61	12	16.44	-	-	-	T	38885163	C	T	38885163	3	4	727	1	0	0	0	0	1	0	0	0	4642	838	29	2	9896	2	DNAH8	6	38885163	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2438198	38885163	132229904	334	64040										
NCR2	0	genome.wustl.edu	37	chr6	41318535	41318535	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtttcctcacctgtagagaGagaaatattatatcacactg	7	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	41318535	41318535	G	A	SNP	NCR2	ENST00000373089	human	ensembl	69_37n	1	known	missense	c.764	p.R255K	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NCR2	HGNC	ENSG00000096264	51	0	0	42	7	14.29	-	-	-	A	41318535	G	A	41318535	3	1	727	1	0	0	0	0	1	0	0	0	10310	942	33	2	782	2	NCR2	6	41318535	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2433372	41318535	129796532	335	64041										
UBR2	0	genome.wustl.edu	37	chr6	42532065	42532065	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggaggagagaagatggcgtCggagctagagccagaggtgc	19	6	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	42532065	42532065	C	G	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.8	p.S3W	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	54	0	0	24	12	33.33	-	-	-	G	42532065	C	G	42532065	3	3	727	1	0	0	0	0	1	0	0	0	16999	893	31	3	10	3	UBR2	6	42532065	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1213530	42532065	128583002	336	64042										
SLC22A7	0	genome.wustl.edu	37	chr6	43267186	43267186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcgtccactttcttcttcgCcggtgtgctggtgggggctg	15	11	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	43267186	43267186	C	T	SNP	SLC22A7	ENST00000372585	human	ensembl	69_37n	1	known	missense	c.458	p.A153V	0.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204	137	0	0	66	19	22.35	-	-	-	T	43267186	C	T	43267186	3	4	727	1	0	0	0	0	1	0	0	0	14548	739	26	4	464	4	SLC22A7	6	43267186	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	735121	43267186	127847881	337	64043										
PKHD1	0	genome.wustl.edu	37	chr6	51921764	51921764	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaagaagtttcctctgcctGatacattcagcacctaaaaa	7	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	51921764	51921764	G	C	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	nonsense	c.1526	p.S509*	0.998	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	48	0	0	36	10	21.28	-	-	-	C	51921764	G	C	51921764	4	2	727	1	0	0	0	0	0	1	0	0	12045	1294	45	2	10941	2	PKHD1	6	51921764	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8654578	51921764	119193303	338	64044										
PGM3	0	genome.wustl.edu	37	chr6	83898385	83898385	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgttgcagattcacagcttCtttctcgctgatgtcaataa	7	9	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	83898385	83898385	C	G	SNP	PGM3	ENST00000513973	human	ensembl	69_37n	-1	known	missense	c.337	p.E113Q	0.998	superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375	72	0	0	49	16	24.62	-	-	-	G	83898385	C	G	83898385	3	3	727	1	0	0	0	0	1	0	0	0	11874	922	32	2	1335	2	PGM3	6	83898385	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	31976621	83898385	87216682	339	64045										
MDN1	0	genome.wustl.edu	37	chr6	90453333	90453333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctcactggccgcaggccacCcaggaagtctgatgtctcca	10	15	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	90453333	90453333	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.4279	p.G1427S	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	88	0	0	48	24	33.33	-	-	-	T	90453333	C	T	90453333	3	4	727	1	0	0	0	0	1	0	0	0	9486	623	22	4	12803	4	MDN1	6	90453333	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6554948	90453333	80661734	340	64046										
HACE1	0	genome.wustl.edu	37	chr6	105291170	105291170	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatttactcatacatttcttCtgcctgaaaagaaaaaagag	5	7	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	105291170	105291170	C	A	SNP	HACE1	ENST00000262903	human	ensembl	69_37n	-1	known	missense	c.330	p.Q110H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382	69	0	0	60	13	17.81	-	-	-	A	105291170	C	A	105291170	3	1	727	1	0	0	0	0	1	0	0	0	6991	912	32	2	2479	2	HACE1	6	105291170	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14837837	105291170	65823897	341	64047										
DSE	0	genome.wustl.edu	37	chr6	116579988	116579988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgagcaggtgtatgacctcGaaggcatgcttgacgatgca	14	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	116579988	116579988	G	A	SNP	DSE	ENST00000540275	human	ensembl	69_37n	1	known	missense	c.382	p.E128K	0.979	NULL	NULL	-	no_errors	DSE	HGNC	ENSG00000111817	50	0	0	21	4	16	-	-	-	A	116579988	G	A	116579988	3	1	727	1	0	0	0	0	1	0	0	0	4809	1073	37	1		1	DSE	6	116579988	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11288818	116579988	54535079	342	64048										
KPNA5	0	genome.wustl.edu	37	chr6	117046930	117046930	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttaggtaattttgaattgttCtgcattaccctgtctcttac	6	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	117046930	117046930	C	G	SNP	KPNA5	ENST00000356348	human	ensembl	69_37n	1	known	missense	c.1016	p.S339C	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911	75	0	0	53	20	27.4	-	-	-	G	117046930	C	G	117046930	3	3	727	1	0	0	0	0	1	0	0	0	8486	913	32	2	1058	2	KPNA5	6	117046930	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	466942	117046930	54068137	343	64049										
NCOA7	0	genome.wustl.edu	37	chr6	126203578	126203578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttgctttcacaaggatgctGacttagcacgaaaggccttg	10	9	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	126203578	126203578	G	A	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	1	known	missense	c.580	p.D194N	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	63	0	0	64	9	12.33	-	-	-	A	126203578	G	A	126203578	3	1	727	1	0	0	0	0	1	0	0	0	10306	1290	45	2	602	2	NCOA7	6	126203578	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9156648	126203578	44911489	344	64050										
EYA4	0	genome.wustl.edu	37	chr6	133802655	133802655	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catcaaagatcttgatgagaGaacctgtaggagttctgggt	12	6	3	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	133802655	133802655	G	C	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	missense	c.1025	p.R342T	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	65	0	0	44	8	15.38	-	-	-	C	133802655	G	C	133802655	3	2	727	1	0	0	0	0	1	0	0	0	5368	942	33	2	1067	2	EYA4	6	133802655	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7599077	133802655	37312412	345	64051										
KIAA1244	0	genome.wustl.edu	37	chr6	138584527	138584527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cattgggtcggacaactgttCactagccgatgaagagcaga	12	9	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	138584527	138584527	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.1907	p.S636L	1.000	superfamily_ARM-type_fold,smart_Sec7	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	38	0	0	23	10	30.3	-	-	-	T	138584527	C	T	138584527	3	4	727	1	0	0	0	0	1	0	0	0	8269	838	29	2	1953	2	KIAA1244	6	138584527	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4781872	138584527	32530540	346	64052										
UTRN	0	genome.wustl.edu	37	chr6	144835051	144835051	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taattcctttgtagaaccatCagaaccagctagaaatattt	5	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	144835051	144835051	C	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	nonsense	c.4951	p.Q1651*	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	39	0	0	52	10	16.13	-	-	-	T	144835051	C	T	144835051	4	4	727	1	0	0	0	0	0	1	0	0	17200	827	29	2	5089	2	UTRN	6	144835051	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6250524	144835051	26280016	347	64053										
UTRN	0	genome.wustl.edu	37	chr6	145118986	145118986	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aataaaccagaaataagtgtGaaagagtttatagattggat	9	2	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	145118986	145118986	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.9105	p.V3035	0.692	pfam_EF-hand_dom_typ2,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	76	0	0	81	22	21.36	-	-	-	A	145118986	G	A	145118986	2	1	727	1	0	0	0	0	0	0	0	1	17200	1277	45	2		2	UTRN	6	145118986	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	283935	145118986	25996081	348	64054										
SHPRH	0	genome.wustl.edu	37	chr6	146256180	146256180	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcagagcccagtcagaaatCttcctgagttttaccaccac	6	13	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	146256180	146256180	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	silent	c.2853	p.K951	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	60	0	0	40	6	13.04	-	-	-	T	146256180	C	T	146256180	2	4	727	1	0	0	0	0	0	0	0	1	14380	912	32	2		2	SHPRH	6	146256180	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1137194	146256180	24858887	349	64055										
GRM1	0	genome.wustl.edu	37	chr6	146678690	146678690	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcatgaatctgcagtacactGaagctaatcgctatgactat	7	9	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	146678690	146678690	G	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.1462	p.E488K	0.959	prints_GPCR_3_mtglu_rcpt_1	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	65	0	0	49	24	32.88	-	-	-	A	146678690	G	A	146678690	3	1	727	1	0	0	0	0	1	0	0	0	6847	1291	45	2	1480	2	GRM1	6	146678690	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	422510	146678690	24436377	350	64056										
ULBP2	0	genome.wustl.edu	37	chr6	150263239	150263239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgccgctaccaagatccttCtgtgcctcccgcttctgctc	7	19	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	150263239	150263239	C	G	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	1	known	missense	c.31	p.L11V	0.001	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	63	0	0	36	7	16.28	-	-	-	G	150263239	C	G	150263239	3	3	727	1	0	0	0	0	1	0	0	0	17070	912	32	2	33	2	ULBP2	6	150263239	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3584549	150263239	20851828	351	64057										
AKAP12	0	genome.wustl.edu	37	chr6	151670262	151670262	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgaagagaccctgaagcgtGagcaaagccacgcagaaatt	11	11	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	151670262	151670262	G	A	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	missense	c.736	p.E246K	0.029	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	30	0	0	15	8	34.78	-	-	-	A	151670262	G	A	151670262	3	1	727	1	0	0	0	0	1	0	0	0	448	1291	45	2	775	2	AKAP12	6	151670262	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1407023	151670262	19444805	352	64058										
AKAP12	0	genome.wustl.edu	37	chr6	151670277	151670277	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcgtgagcaaagccacgcaGaaatttctcccccagccgaa	9	14	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	151670277	151670277	G	T	SNP	AKAP12	ENST00000253332	human	ensembl	69_37n	1	known	nonsense	c.751	p.E251*	0.444	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	26	0	0	14	7	33.33	-	-	-	T	151670277	G	T	151670277	4	4	727	1	0	0	0	0	0	1	0	0	448	943	33	2	790	2	AKAP12	6	151670277	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	15	151670277	19444790	353	64059										
ZBTB2	0	genome.wustl.edu	37	chr6	151687572	151687572	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgggaggagggggaggaacaGgagtggaaacaagttctgga	20	4	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	151687572	151687572	G	C	SNP	ZBTB2	ENST00000325144	human	ensembl	69_37n	-1	known	missense	c.629	p.P210R	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472	70	0	0	53	28	34.57	-	-	-	C	151687572	G	C	151687572	3	2	727	1	0	0	0	0	1	0	0	0	17624	1000	35	4	919	4	ZBTB2	6	151687572	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	17295	151687572	19427495	354	64060										
SYNE1	0	genome.wustl.edu	37	chr6	152782834	152782834	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtgctgtctttgtaattatCttgtattgggcatccatcac	8	8	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	152782834	152782834	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.2292	p.K764N	0.587	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	87	0	0	56	27	32.14	-	-	-	G	152782834	C	G	152782834	3	3	727	1	0	0	0	0	1	0	0	0	15537	912	32	2	24678	2	SYNE1	6	152782834	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1095262	152782834	18332233	355	64061										
TIAM2	0	genome.wustl.edu	37	chr6	155578203	155578203	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtgtccagagtttaacatCtgttgtcagtgaggagtgtt	12	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	155578203	155578203	C	G	SNP	TIAM2	ENST00000456144	human	ensembl	69_37n	1	known	missense	c.5141	p.S1714C	0.935	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426	67	0	0	39	19	32.76	-	-	-	G	155578203	C	G	155578203	3	3	727	1	0	0	0	0	1	0	0	0	15986	913	32	2	5148	2	TIAM2	6	155578203	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2795369	155578203	15536864	356	64062										
MAS1	0	genome.wustl.edu	37	chr6	160328830	160328830	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccaaccctttcatttacttCtttgtgggaagcagtaagaa	8	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	160328830	160328830	C	G	SNP	MAS1	ENST00000252660	human	ensembl	69_37n	1	known	missense	c.843	p.F281L	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mas_TM,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368	39	0	0	30	9	23.08	-	-	-	G	160328830	C	G	160328830	3	3	727	1	0	0	0	0	1	0	0	0	9391	912	32	2	845	2	MAS1	6	160328830	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4750627	160328830	10786237	357	64063										
IGF2R	0	genome.wustl.edu	37	chr6	160482885	160482885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcgaatggatctttgagcatCatgtatgtcaacggtgacaa	11	7	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	160482885	160482885	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	silent	c.3507	p.I1169	0.425	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	67	0	0	51	28	35	-	-	-	T	160482885	C	T	160482885	2	4	727	1	0	0	0	0	0	0	0	1	7630	816	29	2		2	IGF2R	6	160482885	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	154055	160482885	10632182	358	64064										
FGFR1OP	0	genome.wustl.edu	37	chr6	167417226	167417226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tataggtcgtttagtggctaGtcttgttgcagaatttcttc	10	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	6	167417226	167417226	G	A	SNP	FGFR1OP	ENST00000366847	human	ensembl	69_37n	1	known	missense	c.227	p.S76N	1.000	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	-	no_errors	FGFR1OP	HGNC	ENSG00000213066	341	1	0.29	212	62	22.63	-	-	-	A	167417226	G	A	167417226	3	1	727	1	0	0	0	0	1	0	0	0	5910	1029	36	4	241	4	FGFR1OP	6	167417226	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6934341	167417226	3697841	359	64065										
GNA12	0	genome.wustl.edu	37	chr7	2771046	2771046	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcttgatgctcacggtcttCaccttctccaccaggaggtc	8	14	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	2771046	2771046	C	T	SNP	GNA12	ENST00000275364	human	ensembl	69_37n	-1	known	silent	c.915	p.V305	0.998	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA12	HGNC	ENSG00000146535	34	0	0	29	11	27.5	-	-	-	T	2771046	C	T	2771046	2	4	727	1	0	0	0	0	0	0	0	1	6552	813	29	2		2	GNA12	7	2771046	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		2771046	156367617	360	64066										
GNA12	0	genome.wustl.edu	37	chr7	2771197	2771197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaggacctggtcgtactcgCtggaggagaccatgaacagg	15	9	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	2771197	2771197	C	T	SNP	GNA12	ENST00000275364	human	ensembl	69_37n	-1	known	missense	c.764	p.S255N	0.981	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA12	HGNC	ENSG00000146535	43	0	0	22	8	26.67	-	-	-	T	2771197	C	T	2771197	3	4	727	1	0	0	0	0	1	0	0	0	6552	797	28	4	385	4	GNA12	7	2771197	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	151	2771197	156367466	361	64067										
CARD11	0	genome.wustl.edu	37	chr7	2987384	2987384	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaggcgtcctcttcatccttCagcgtctccatgtagtcatc	7	14	5	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	2987384	2987384	C	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.45	p.L15	0.851	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	117	0	0	54	16	22.86	-	-	-	T	2987384	C	T	2987384	2	4	727	1	0	0	0	0	0	0	0	1	2670	813	29	2		2	CARD11	7	2987384	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	216187	2987384	156151279	362	64068										
SDK1	0	genome.wustl.edu	37	chr7	4281470	4281470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtctgtgaccctggacaacgGaggatttgctgccctggagc	14	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	4281470	4281470	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.6176	p.G2059E	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	51	0	0	27	7	20.59	-	-	-	A	4281470	G	A	4281470	3	1	727	1	0	0	0	0	1	0	0	0	14056	1174	41	2	6346	2	SDK1	7	4281470	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1294086	4281470	154857193	363	64069										
RBAK	0	genome.wustl.edu	37	chr7	5104349	5104349	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tactctgattacacatcagaGaacacacacgggagagaagc	9	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	5104349	5104349	G	C	SNP	RBAK	ENST00000353796	human	ensembl	69_37n	1	known	missense	c.1262	p.R421T	0.990	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	31	0	0	25	14	35.9	-	-	-	C	5104349	G	C	5104349	3	2	727	1	0	0	0	0	1	0	0	0	13183	942	33	2	1276	2	RBAK	7	5104349	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	822879	5104349	154034314	364	64070										
WIPI2	0	genome.wustl.edu	37	chr7	5256731	5256731	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcatttgcaggcctgtgtgcGctgtcaatcaacaacgacaa	9	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	5256731	5256731	G	A	SNP	WIPI2	ENST00000288828	human	ensembl	69_37n	1	known	silent	c.489	p.A163	0.002	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954	51	0	0	44	15	25	-	-	-	A	5256731	G	A	5256731	2	1	727	1	0	0	0	0	0	0	0	1	17468	1074	38	1		1	WIPI2	7	5256731	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	152382	5256731	153881932	365	64071										
PMS2	0	genome.wustl.edu	37	chr7	6026983	6026983	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctggaactcactgcctctttCtgaggtctcaggacgccttt	9	13	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	6026983	6026983	C	T	SNP	PMS2	ENST00000265849	human	ensembl	69_37n	-1	known	silent	c.1413	p.Q471	0.001	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	54	0	0	40	11	21.57	-	-	-	T	6026983	C	T	6026983	2	4	727	1	0	0	0	0	0	0	0	1	12217	912	32	2		2	PMS2	7	6026983	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	770252	6026983	153111680	366	64072										
C1GALT1	0	genome.wustl.edu	37	chr7	7283329	7283329	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcaagcaaacaaaaatgaaGatacaaaagtgaagttagga	9	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	7283329	7283329	G	C	SNP	C1GALT1	ENST00000223122	human	ensembl	69_37n	1	known	missense	c.1063	p.D355H	0.995	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392	50	0	0	52	10	16.13	-	-	-	C	7283329	G	C	7283329	3	2	727	1	0	0	0	0	1	0	0	0	1971	942	33	2	1073	2	C1GALT1	7	7283329	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1256346	7283329	151855334	367	64073										
THSD7A	0	genome.wustl.edu	37	chr7	11446994	11446994	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caatcagaaagctgacagttCacagggcattccaccatgca	8	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	11446994	11446994	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.3855	p.V1285	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	66	0	0	39	7	15.22	-	-	-	T	11446994	C	T	11446994	2	4	727	1	0	0	0	0	0	0	0	1	15974	813	29	2		2	THSD7A	7	11446994	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4163665	11446994	147691669	368	64074										
SNX13	0	genome.wustl.edu	37	chr7	17873687	17873687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccttacctccatccccatCatcggatcctctgaaactag	4	17	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	17873687	17873687	C	G	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.1585	p.D529H	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	77	0	0	58	7	10.77	-	-	-	G	17873687	C	G	17873687	3	3	727	1	0	0	0	0	1	0	0	0	14973	826	29	2	1336	2	SNX13	7	17873687	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6426693	17873687	141264976	369	64075										
C7orf31	0	genome.wustl.edu	37	chr7	25175643	25175643	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agaattggtgcttcatccccGaatgctcattatccctgagg	9	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	25175643	25175643	G	C	SNP	C7orf31	ENST00000283905	human	ensembl	69_37n	-1	known	missense	c.1721	p.S574W	0.001	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	63	0	0	62	15	19.48	-	-	-	C	25175643	G	C	25175643	3	2	727	1	0	0	0	0	1	0	0	0	2410	1059	37	3	55	3	C7orf31	7	25175643	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7301956	25175643	133963020	370	64076										
CPVL	0	genome.wustl.edu	37	chr7	29152329	29152329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggcacctacctgagctggGaagaaccagaagaagaggtt	14	8	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	29152329	29152329	G	T	SNP	CPVL	ENST00000265394	human	ensembl	69_37n	-1	known	missense	c.279	p.F93L	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066	62	0	0	36	11	23.4	-	-	-	T	29152329	G	T	29152329	3	4	727	1	0	0	0	0	1	0	0	0	3865	1165	41	2	1195	2	CPVL	7	29152329	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3976686	29152329	129986334	371	64077										
GHRHR	0	genome.wustl.edu	37	chr7	31018925	31018925	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taccacgggtctgccatgctCtggaggagcaagggggccac	15	12	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	31018925	31018925	C	T	SNP	GHRHR	ENST00000463164	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	GHRHR	HGNC	ENSG00000106128	22	0	0	13	6	31.58	-	-	-	T	31018925	C	T	31018925	1	4	727	0	1	0	0	0	0	0	0	0	6425	928	32	2		2	GHRHR	7	31018925	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1866596	31018925	128119738	372	64078										
ADCY1	0	genome.wustl.edu	37	chr7	45701780	45701780	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcaaggccgagatccccttCtccaatgtcatgacctgcga	8	14	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	45701780	45701780	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	silent	c.1572	p.F524	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	46	0	0	22	6	21.43	-	-	-	T	45701780	C	T	45701780	2	4	727	1	0	0	0	0	0	0	0	1	292	912	32	2		2	ADCY1	7	45701780	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14682855	45701780	113436883	373	64079										
ABCA13	0	genome.wustl.edu	37	chr7	48237925	48237925	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggatcaaggtgtaggaacttCagctatgaagggtcaatgga	14	5	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	48237925	48237925	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.255	p.F85	0.024	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	77	0	0	50	6	10.53	-	-	-	T	48237925	C	T	48237925	2	4	727	1	0	0	0	0	0	0	0	1	31	825	29	2		2	ABCA13	7	48237925	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2536145	48237925	110900738	374	64080										
TYW1	0	genome.wustl.edu	37	chr7	66532313	66532313	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggttgttacaaacacacattCtatggaattgagagccatcg	9	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	66532313	66532313	C	T	SNP	TYW1	ENST00000359626	human	ensembl	69_37n	1	known	silent	c.1197	p.F399	1.000	NULL	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874	146	0	0	80	33	29.2	-	-	-	T	66532313	C	T	66532313	2	4	727	1	0	0	0	0	0	0	0	1	16915	912	32	2		2	TYW1	7	66532313	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	18294388	66532313	92606350	375	64081										
STX1A	0	genome.wustl.edu	37	chr7	73117062	73117062	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagcgggtgattggttacctGagaacttggtccctccccgg	13	12	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	73117062	73117062	G	A	SNP	STX1A	ENST00000395154	human	ensembl	69_37n	-1	putative	missense	c.791	p.S264L	0.991	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,pfscan_T_SNARE_dom	-	no_errors	STX1A	HGNC	ENSG00000106089	11	0	0	9	5	35.71	-	-	-	A	73117062	G	A	73117062	3	1	727	1	0	0	0	0	1	0	0	0	15434	1305	45	2		2	STX1A	7	73117062	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6584749	73117062	86021601	376	64082										
GTF2IRD1	0	genome.wustl.edu	37	chr7	73938400	73938400	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgcctcctgtgttttgataGagaagtgggacgccttcata	12	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	73938400	73938400	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	69_37n	1	known	splice_site	c.1007-1	e7-1	1.000	-	-	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704	42	0	0	35	5	12.5	-	-	-	A	73938400	G	A	73938400	5	1	727	1	0	0	0	0	0	0	1	0	6919	956	33	2	1032	2	GTF2IRD1	7	73938400	Splice_Site	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	821338	73938400	85200263	377	64083										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74536717	74536717	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagagggactgtgtgaggtGaaacctccctgccctgtgaa	14	10	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	74536717	74536717	G	A	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	silent	c.264	p.V88	0.015	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	21	0	0	19	4	17.39	-	-	-	A	74536717	G	A	74536717	2	1	727	1	0	0	0	0	0	0	0	1	6921	1277	45	2		2	GTF2IRD2B	7	74536717	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	598317	74536717	84601946	378	64084										
PCLO	0	genome.wustl.edu	37	chr7	82579161	82579161	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgggtggagatgtggcactCagatattgaggactttgtgt	15	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	82579161	82579161	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.10743	p.L3581	0.951	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	140	0	0	146	26	15.03	-	-	-	T	82579161	C	T	82579161	2	4	727	1	0	0	0	0	0	0	0	1	11656	813	29	2		2	PCLO	7	82579161	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8042444	82579161	76559502	379	64085										
PCLO	0	genome.wustl.edu	37	chr7	82785412	82785412	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttcttcctgggatgcctcaGagtctgatatcaaatcaaaa	7	9	5	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	82785412	82785412	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.545	p.S182F	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	127	0	0	124	35	22.01	-	-	-	A	82785412	G	A	82785412	3	1	727	1	0	0	0	0	1	0	0	0	11656	942	33	2	14996	2	PCLO	7	82785412	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	206251	82785412	76353251	380	64086										
LMTK2	0	genome.wustl.edu	37	chr7	97816228	97816228	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgataaaaaagttttccctCtgcgatggactgctccagaa	8	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	97816228	97816228	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	silent	c.916	p.L306	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	78	0	0	72	15	17.05	-	-	-	T	97816228	C	T	97816228	2	4	727	1	0	0	0	0	0	0	0	1	8915	912	32	2		2	LMTK2	7	97816228	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	15030816	97816228	61322435	381	64087										
FAM200A	0	genome.wustl.edu	37	chr7	99144807	99144807	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtcttcattaataatgttCtcttcgatgtgttgcaataa	6	7	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	99144807	99144807	C	G	SNP	FAM200A	ENST00000449309	human	ensembl	69_37n	-1	known	missense	c.1224	p.E408D	0.891	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM200A	HGNC	ENSG00000221909	30	0	0	18	6	25	-	-	-	G	99144807	C	G	99144807	3	3	727	1	0	0	0	0	1	0	0	0	5578	912	32	2	501	2	FAM200A	7	99144807	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1328579	99144807	59993856	382	64088										
COPS6	0	genome.wustl.edu	37	chr7	99689093	99689093	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggaggcctatgctctgtgtCactgtctcccggtgctcagc	13	13	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	99689093	99689093	C	T	SNP	COPS6	ENST00000303904	human	ensembl	69_37n	1	known	missense	c.793	p.H265Y	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	COPS6	HGNC	ENSG00000168090	85	0	0	41	18	30.51	-	-	-	T	99689093	C	T	99689093	3	4	727	1	0	0	0	0	1	0	0	0	3767	826	29	2	827	2	COPS6	7	99689093	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	544286	99689093	59449570	383	64089										
MUC17	0	genome.wustl.edu	37	chr7	100675012	100675012	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttcagacactcctggtgtCtccagtaccaggatgacacc	8	14	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	100675012	100675012	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.315	p.V105	0.004	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	69	0	0	42	14	24.56	-	-	-	T	100675012	C	T	100675012	2	4	727	1	0	0	0	0	0	0	0	1	10046	900	32	2		2	MUC17	7	100675012	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	985919	100675012	58463651	384	64090										
CUX1	0	genome.wustl.edu	37	chr7	101842130	101842130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atttcaggaagtaccgaaacGaagaaatgggtctgaaggta	12	5	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	101842130	101842130	G	A	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	missense	c.1976	p.R659Q	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	86	0	0	49	16	24.62	-	-	-	A	101842130	G	A	101842130	3	1	727	1	0	0	0	0	1	0	0	0	4095	1058	37	1	2072	1	CUX1	7	101842130	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1167118	101842130	57296533	385	64091										
POLR2J3	0	genome.wustl.edu	37	chr7	102212838	102212838	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagctgtttccctcccggggCaagagatgggcaggagacac	14	11	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	102212838	102212838	C	G	SNP	POLR2J3	ENST00000504157	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	POLR2J3	HGNC	ENSG00000168255	68	0	0	17	3	15	-	-	-	G	102212838	C	G	102212838	1	3	727	0	1	0	0	0	0	0	0	0	12299	725	25	4		4	POLR2J3	7	102212838	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	370708	102212838	56925825	386	64092										
RELN	0	genome.wustl.edu	37	chr7	103113290	103113290	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctaagtgaccttcgtcttCtgttgtagaaatgtctgagc	10	9	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	103113290	103113290	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.10352	p.R3451K	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	148	0	0	116	39	25.16	-	-	-	T	103113290	C	T	103113290	3	4	727	1	0	0	0	0	1	0	0	0	13303	913	32	2	34	2	RELN	7	103113290	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	900452	103113290	56025373	387	64093										
RELN	0	genome.wustl.edu	37	chr7	103155815	103155815	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcgttctgatccaggccgtCatgtcttggctgccaccagc	11	14	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	103155815	103155815	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.7936	p.D2646N	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	21	0	0	12	7	36.84	-	-	-	T	103155815	C	T	103155815	3	4	727	1	0	0	0	0	1	0	0	0	13303	826	29	2	2510	2	RELN	7	103155815	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	42525	103155815	55982848	388	64094										
MLL5	0	genome.wustl.edu	37	chr7	104715186	104715186	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcaattactttaactgcttCaagagtttccaaagttaatg	5	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	104715186	104715186	C	G	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	nonsense	c.653	p.S218*	0.998	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	73	0	0	50	15	23.08	-	-	-	G	104715186	C	G	104715186	4	3	727	1	0	0	0	0	0	1	0	0	9695	838	29	2	675	2	MLL5	7	104715186	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1559371	104715186	54423477	389	64095										
PUS7	0	genome.wustl.edu	37	chr7	105146666	105146666	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actggaatggacaagtcattCaaatggctgatccgtccatc	9	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	105146666	105146666	C	G	SNP	PUS7	ENST00000356362	human	ensembl	69_37n	-1	known	missense	c.453	p.L151F	1.000	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127	80	0	0	52	20	27.78	-	-	-	G	105146666	C	G	105146666	3	3	727	1	0	0	0	0	1	0	0	0	12916	825	29	2	1588	2	PUS7	7	105146666	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	431480	105146666	53991997	390	64096										
HBP1	0	genome.wustl.edu	37	chr7	106840607	106840607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaatatttattttacagagCcataagtgtgatccttggtg	8	5	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	106840607	106840607	C	G	SNP	HBP1	ENST00000222574	human	ensembl	69_37n	1	known	missense	c.1388	p.A463G	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Ataxin-1_HBP1,pfam_HMG_superfamily,superfamily_Ataxin-1_HBP1,superfamily_HMG_superfamily,smart_Ataxin_AXH_dom,smart_HMG_superfamily,pfscan_Ataxin-1_HBP1,pfscan_HMG_superfamily	-	no_errors	HBP1	HGNC	ENSG00000105856	110	0	0	91	31	25.41	-	-	-	G	106840607	C	G	106840607	3	3	727	1	0	0	0	0	1	0	0	0	7036	739	26	4	1422	4	HBP1	7	106840607	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1693941	106840607	52298056	391	64097										
BCAP29	0	genome.wustl.edu	37	chr7	107254145	107254145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaaagaagccacaaaaatgGcagcattggaaaacagactg	9	8	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	107254145	107254145	G	A	SNP	BCAP29	ENST00000379119	human	ensembl	69_37n	1	known	missense	c.737	p.G246D	0.000	NULL	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790	92	0	0	81	19	19	-	-	-	A	107254145	G	A	107254145	3	1	727	1	0	0	0	0	1	0	0	0	1350	1203	42	4	763	4	BCAP29	7	107254145	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	413538	107254145	51884518	392	64098										
NRCAM	0	genome.wustl.edu	37	chr7	107880462	107880462	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaagagaatcaggggcactCtgcccgcagataagcgcttc	13	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	107880462	107880462	C	G	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.47	p.R16T	0.818	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	64	0	0	45	21	31.82	-	-	-	G	107880462	C	G	107880462	3	3	727	1	0	0	0	0	1	0	0	0	10717	913	32	2	4017	2	NRCAM	7	107880462	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	626317	107880462	51258201	393	64099										
DOCK4	0	genome.wustl.edu	37	chr7	111451976	111451976	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agttcttacgaagtgcatctGagaggtatagaactgttgta	11	5	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	111451976	111451976	G	C	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	nonsense	c.2960	p.S987*	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	46	0	0	33	10	23.26	-	-	-	C	111451976	G	C	111451976	4	2	727	1	0	0	0	0	0	1	0	0	4724	1294	45	2	3040	2	DOCK4	7	111451976	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3571514	111451976	47686687	394	64100										
CFTR	0	genome.wustl.edu	37	chr7	117232054	117232054	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctaaaatggaacatttaaaGaaagctgacaaaatattaat	5	4	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	117232054	117232054	G	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.1833	p.K611N	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	24	0	0	15	10	40	-	-	-	C	117232054	G	C	117232054	3	2	727	1	0	0	0	0	1	0	0	0	3323	933	33	2	1887	2	CFTR	7	117232054	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5780078	117232054	41906609	395	64101										
RBM28	0	genome.wustl.edu	37	chr7	127975934	127975934	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcacaggcttggtcacctttGattctatattctcttcctct	6	12	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	127975934	127975934	G	A	SNP	RBM28	ENST00000487602	human	ensembl	69_37n	-1	known	nonsense	c.193	p.Q65*	0.005	NULL	pfam_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RBM28	HGNC	ENSG00000106344	245	0	0	152	51	24.76	-	-	-	A	127975934	G	A	127975934	4	1	727	1	0	0	0	0	0	1	0	0	13211	1294	45	2	1555	2	RBM28	7	127975934	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	10743880	127975934	31162729	396	64102										
FLNC	0	genome.wustl.edu	37	chr7	128484829	128484829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaccgtagagggcccctgcGaggccaagatcgagtgccag	15	12	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	128484829	128484829	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.3310	p.E1104K	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	35	0	0	13	5	27.78	-	-	-	A	128484829	G	A	128484829	3	1	727	1	0	0	0	0	1	0	0	0	5981	1059	37	1	3392	1	FLNC	7	128484829	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	508895	128484829	30653834	397	64103										
SMO	0	genome.wustl.edu	37	chr7	128845151	128845151	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacgtggagggctgcggcatCcagtgccagaacccgctctt	14	13	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	128845151	128845151	C	G	SNP	SMO	ENST00000249373	human	ensembl	69_37n	1	known	missense	c.645	p.I215M	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	40	0	0	25	9	26.47	-	-	-	G	128845151	C	G	128845151	3	3	727	1	0	0	0	0	1	0	0	0	14889	845	30	2	655	2	SMO	7	128845151	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	360322	128845151	30293512	398	64104										
AHCYL2	0	genome.wustl.edu	37	chr7	129064919	129064919	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctaggctcttgccttgataGagctttacaatgctcctgag	9	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	129064919	129064919	G	C	SNP	AHCYL2	ENST00000325006	human	ensembl	69_37n	1	known	missense	c.1645	p.E549Q	1.000	pfam_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467	70	0	0	68	19	21.84	-	-	-	C	129064919	G	C	129064919	3	2	727	1	0	0	0	0	1	0	0	0	411	943	33	2	1825	2	AHCYL2	7	129064919	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	219768	129064919	30073744	399	64105										
EXOC4	0	genome.wustl.edu	37	chr7	133002139	133002139	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctattctactgctggaagctCaagtggtaagtatttaattc	8	7	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	133002139	133002139	C	G	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	nonsense	c.758	p.S253*	0.998	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	120	0	0	69	32	31.68	-	-	-	G	133002139	C	G	133002139	4	3	727	1	0	0	0	0	0	1	0	0	5342	838	29	2	776	2	EXOC4	7	133002139	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3937220	133002139	26136524	400	64106										
OR9A4	0	genome.wustl.edu	37	chr7	141619286	141619286	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatcctcttcttaatggctgTttttgttctctttggttctt	6	8	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	141619286	141619286	T	G	SNP	OR9A4	ENST00000548136	human	ensembl	69_37n	1	known	missense	c.611	p.V204G	0.370	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	118	0	0	92	19	17.12	-	-	-	G	141619286	T	G	141619286	3	3	727	1	0	0	0	0	1	0	0	0	11322	1725	60	5	613	5	OR9A4	7	141619286	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	8617147	141619286	17519377	401	64107										
CNTNAP2	0	genome.wustl.edu	37	chr7	147259301	147259301	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attattactggatagatcctGatggcagcggacctctgggg	13	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	147259301	147259301	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.1849	p.D617N	1.000	superfamily_Fibrinogen_a/b/g_C	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	80	0	0	77	21	21.21	-	-	-	A	147259301	G	A	147259301	3	1	727	1	0	0	0	0	1	0	0	0	3677	1290	45	2	1895	2	CNTNAP2	7	147259301	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5640015	147259301	11879362	402	64108										
KRBA1	0	genome.wustl.edu	37	chr7	149421749	149421749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctcctcccgcagggcctgGatacctcctgacccctcctc	8	21	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	149421749	149421749	G	T	SNP	KRBA1	ENST00000255992	human	ensembl	69_37n	1	known	missense	c.935	p.G312V	0.002	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619	33	0	0	21	5	19.23	-	-	-	T	149421749	G	T	149421749	3	4	727	1	0	0	0	0	1	0	0	0	8492	1174	41	2	965	2	KRBA1	7	149421749	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2162448	149421749	9716914	403	64109										
GIMAP8	0	genome.wustl.edu	37	chr7	150174822	150174822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaaaatgtccaggaaatgtCccaagccgaaaaactcctta	6	10	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	150174822	150174822	C	T	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.1952	p.S651F	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	33	0	0	22	9	29.03	-	-	-	T	150174822	C	T	150174822	3	4	727	1	0	0	0	0	1	0	0	0	6437	855	30	2	1966	2	GIMAP8	7	150174822	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	753073	150174822	8963841	404	64110										
NUB1	0	genome.wustl.edu	37	chr7	151074240	151074240	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcttgactcaactctggaaGatgaagaaattattattgca	7	6	3	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	7	151074240	151074240	G	C	SNP	NUB1	ENST00000568733	human	ensembl	69_37n	1	known	missense	c.1849	p.D617H	1.000	NULL	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374	45	0	0	35	8	18.6	-	-	-	C	151074240	G	C	151074240	3	2	727	1	0	0	0	0	1	0	0	0	10787	942	33	2	1789	2	NUB1	7	151074240	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	899418	151074240	8064423	405	64111										
ARHGEF10	0	genome.wustl.edu	37	chr8	1806219	1806219	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaaatcccagaagcggacaGacaggccccatccgcccctg	10	16	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	1806219	1806219	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	69_37n	1	known	missense	c.203	p.R68K	0.202	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728	35	0	0	22	9	29.03	-	-	-	A	1806219	G	A	1806219	3	1	727	1	0	0	0	0	1	0	0	0	896	942	33	2	137	2	ARHGEF10	8	1806219	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		1806219	144557803	406	64112										
MYOM2	0	genome.wustl.edu	37	chr8	2054142	2054142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctggtgtaaatcctacgagGagatttcagatgatgagagg	13	6	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	2054142	2054142	G	C	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.2845	p.E949Q	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	77	0	0	61	13	17.57	-	-	-	C	2054142	G	C	2054142	3	2	727	1	0	0	0	0	1	0	0	0	10164	1175	41	2	2927	2	MYOM2	8	2054142	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	247923	2054142	144309880	407	64113										
INTS10	0	genome.wustl.edu	37	chr8	19703292	19703292	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atctggaattactacccaatCaaggaatgctgatcaagtaa	7	8	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	19703292	19703292	C	G	SNP	INTS10	ENST00000397977	human	ensembl	69_37n	1	known	missense	c.1960	p.Q654E	1.000	NULL	NULL	-	no_errors	INTS10	HGNC	ENSG00000104613	81	0	0	51	24	32	-	-	-	G	19703292	C	G	19703292	3	3	727	1	0	0	0	0	1	0	0	0	7830	827	29	2	2022	2	INTS10	8	19703292	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	17649150	19703292	126660730	408	64114										
FAM160B2	0	genome.wustl.edu	37	chr8	21957369	21957369	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acccccacaccctgtatgctCatctcatcgggcattgtgac	7	16	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	21957369	21957369	C	T	SNP	FAM160B2	ENST00000289921	human	ensembl	69_37n	1	known	missense	c.1306	p.H436Y	0.998	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B2	HGNC	ENSG00000158863	17	0	0	14	8	34.78	-	-	-	T	21957369	C	T	21957369	3	4	727	1	0	0	0	0	1	0	0	0	5511	826	29	2	1143	2	FAM160B2	8	21957369	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2254077	21957369	124406653	409	64115										
EPHX2	0	genome.wustl.edu	37	chr8	27373304	27373304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctctgccatggatttcccGagagttggtattcttggagg	13	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	27373304	27373304	G	A	SNP	EPHX2	ENST00000521400	human	ensembl	69_37n	1	known	missense	c.805	p.E269K	1.000	prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Epox_hydrolase-like,prints_Haloacid_DH/epoxide_hydro,prints_AB_hydrolase_1,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	EPHX2	HGNC	ENSG00000120915	71	0	0	43	8	15.69	-	-	-	A	27373304	G	A	27373304	3	1	727	1	0	0	0	0	1	0	0	0	5217	1059	37	1	831	1	EPHX2	8	27373304	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5415935	27373304	118990718	410	64116										
SCARA5	0	genome.wustl.edu	37	chr8	27762283	27762283	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catatcccacggccccagcaGaatgtccttactggcatccc	7	17	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	27762283	27762283	G	A	SNP	SCARA5	ENST00000524352	human	ensembl	69_37n	-1	known	silent	c.1165	p.L389	0.000	NULL	pfam_Collagen	-	no_errors	SCARA5	HGNC	ENSG00000168079	128	0	0	84	22	20.75	-	-	-	A	27762283	G	A	27762283	2	1	727	1	0	0	0	0	0	0	0	1	13967	957	33	2		2	SCARA5	8	27762283	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	388979	27762283	118601739	411	64117										
FZD3	0	genome.wustl.edu	37	chr8	28385334	28385334	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttagcgatgaataaaattGaaggtgacaatattagtggc	10	3	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	28385334	28385334	G	A	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	1	known	missense	c.1057	p.E353K	1.000	pfam_Frizzled,prints_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	119	0	0	100	14	12.28	-	-	-	A	28385334	G	A	28385334	3	1	727	1	0	0	0	0	1	0	0	0	6180	1291	45	2	1067	2	FZD3	8	28385334	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	623051	28385334	117978688	412	64118										
GSR	0	genome.wustl.edu	37	chr8	30553959	30553959	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgacaggatccctgccatctCcacagcaatgtaacctgcac	7	15	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	30553959	30553959	C	A	SNP	GSR	ENST00000221130	human	ensembl	69_37n	-1	known	nonsense	c.733	p.E245*	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	-	no_errors	GSR	HGNC	ENSG00000104687	60	0	0	35	6	14.63	-	-	-	A	30553959	C	A	30553959	4	1	727	1	0	0	0	0	0	1	0	0	6879	864	30	2	863	2	GSR	8	30553959	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2168625	30553959	115810063	413	64119										
UBXN8	0	genome.wustl.edu	37	chr8	30601689	30601689	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggcgggctttccgcctgcaCcaggcgcttccgccaccatg	13	17	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	30601689	30601689	C	T	SNP	UBXN8	ENST00000517341	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBXN8	HGNC	ENSG00000104691	67	0	0	29	11	27.5	-	-	-	T	30601689	C	T	30601689	1	4	727	0	1	0	0	0	0	0	0	0	17016	522	18	4		4	UBXN8	8	30601689	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	47730	30601689	115762333	414	64120										
WRN	0	genome.wustl.edu	37	chr8	30969164	30969164	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacttactgctactgcaagtTcttcaatccgggaagacatt	7	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	30969164	30969164	T	G	SNP	WRN	ENST00000298139	human	ensembl	69_37n	1	known	missense	c.2122	p.S708A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	73	0	0	61	26	29.89	-	-	-	G	30969164	T	G	30969164	3	3	727	1	0	0	0	0	1	0	0	0	17499	1783	62	5	2192	5	WRN	8	30969164	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	367475	30969164	115394858	415	64121										
ZNF703	0	genome.wustl.edu	37	chr8	37553647	37553647	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caggcgaaccggctcccgatCagggtcctgaagatgctgag	14	12	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	37553647	37553647	C	T	SNP	ZNF703	ENST00000331569	human	ensembl	69_37n	1	known	silent	c.150	p.I50	0.979	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF703	HGNC	ENSG00000183779	15	0	0	4	4	44.44	-	-	-	T	37553647	C	T	37553647	2	4	727	1	0	0	0	0	0	0	0	1	18202	816	29	2		2	ZNF703	8	37553647	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6584483	37553647	108810375	416	64122										
BAG4	0	genome.wustl.edu	37	chr8	38067752	38067752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctgaagaatgtgtaccttCagatgaaagtactcctccga	8	10	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	38067752	38067752	C	T	SNP	BAG4	ENST00000287322	human	ensembl	69_37n	1	known	missense	c.1115	p.S372L	0.988	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735	43	0	0	18	14	43.75	-	-	-	T	38067752	C	T	38067752	3	4	727	1	0	0	0	0	1	0	0	0	1293	838	29	2	1133	2	BAG4	8	38067752	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	514105	38067752	108296270	417	64123										
ANK1	0	genome.wustl.edu	37	chr8	41530277	41530277	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagaccacacctgcatgtcaGacatctccagcatggtgtca	8	14	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	41530277	41530277	G	C	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.4691	p.S1564C	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	30	0	0	14	8	36.36	-	-	-	C	41530277	G	C	41530277	3	2	727	1	0	0	0	0	1	0	0	0	620	942	33	2	1300	2	ANK1	8	41530277	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3462525	41530277	104833745	418	64124										
HGSNAT	0	genome.wustl.edu	37	chr8	43033331	43033331	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggaggagtttcctgttaatCtgcataggaattatcattgt	10	5	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	43033331	43033331	C	T	SNP	HGSNAT	ENST00000458501	human	ensembl	69_37n	1	known	silent	c.1050	p.I350	0.061	pfam_DUF1624	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	179	0	0	150	47	23.62	-	-	-	T	43033331	C	T	43033331	2	4	727	1	0	0	0	0	0	0	0	1	7139	903	32	2		2	HGSNAT	8	43033331	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1503054	43033331	103330691	419	64125										
MCM4	0	genome.wustl.edu	37	chr8	48887472	48887472	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcgggaagctctgaagcagtCtgcaactgatccccggactg	12	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	48887472	48887472	C	G	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	missense	c.2315	p.S772C	1.000	prints_MCM_4	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	64	0	0	49	17	25.76	-	-	-	G	48887472	C	G	48887472	3	3	727	1	0	0	0	0	1	0	0	0	9460	913	32	2	2369	2	MCM4	8	48887472	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5854141	48887472	97476550	420	64126										
PXDNL	0	genome.wustl.edu	37	chr8	52323876	52323876	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatcagctgcagcgtgtgctCaaaaatctcccctgctcttg	8	13	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	52323876	52323876	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.1996	p.E666K	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	59	0	0	39	10	20.41	-	-	-	T	52323876	C	T	52323876	3	4	727	1	0	0	0	0	1	0	0	0	12931	835	29	2	2427	2	PXDNL	8	52323876	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3436404	52323876	94040146	421	64127										
LYPLA1	0	genome.wustl.edu	37	chr8	55013291	55013291	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaatcaataaactcacgatGataaggggaaaattctgagg	9	5	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	55013291	55013291	G	A	SNP	LYPLA1	ENST00000521856	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.058	-	-	-	no_errors	LYPLA1	HGNC	ENSG00000120992	23	0	0	8	6	42.86	-	-	-	A	55013291	G	A	55013291	1	1	727	0	1	0	0	0	0	0	0	0	9183	1305	45	2		2	LYPLA1	8	55013291	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2689415	55013291	91350731	422	64128										
XKR4	0	genome.wustl.edu	37	chr8	56435862	56435862	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcacagcggcagcttccctCgtgtccctggcctgggcctt	11	16	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	56435862	56435862	C	T	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	silent	c.1029	p.L343	0.017	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	52	0	0	16	21	56.76	-	-	-	T	56435862	C	T	56435862	2	4	727	1	0	0	0	0	0	0	0	1	17530	871	31	1		1	XKR4	8	56435862	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1422571	56435862	89928160	423	64129										
CHD7	0	genome.wustl.edu	37	chr8	61654172	61654172	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcatcatccttcaactaatCaaaatcaaacaaagctgaca	2	11	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	61654172	61654172	C	T	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	nonsense	c.181	p.Q61*	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	63	0	0	45	16	26.23	-	-	-	T	61654172	C	T	61654172	4	4	727	1	0	0	0	0	0	1	0	0	3359	827	29	2	183	2	CHD7	8	61654172	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5218310	61654172	84709850	424	64130										
VCPIP1	0	genome.wustl.edu	37	chr8	67546774	67546774	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcagttgtgttagtcatctCagcatcttgactatccatct	6	11	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	67546774	67546774	C	G	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.3631	p.E1211Q	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	89	0	0	71	11	13.41	-	-	-	G	67546774	C	G	67546774	3	3	727	1	0	0	0	0	1	0	0	0	17238	835	29	2	41	2	VCPIP1	8	67546774	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5892602	67546774	78817248	425	64131										
CSPP1	0	genome.wustl.edu	37	chr8	68071328	68071328	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaaatataacctgcaacttCagcactactgtgaaagagac	6	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	68071328	68071328	C	A	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	missense	c.2479	p.Q827K	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	49	0	0	46	21	31.34	-	-	-	A	68071328	C	A	68071328	3	1	727	1	0	0	0	0	1	0	0	0	3994	827	29	2	2666	2	CSPP1	8	68071328	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	524554	68071328	78292694	426	64132										
SNX16	0	genome.wustl.edu	37	chr8	82736169	82736169	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcgaaaacctggaaacatctCttttaactgaaaaagaagaa	6	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	82736169	82736169	C	G	SNP	SNX16	ENST00000345957	human	ensembl	69_37n	-1	known	missense	c.469	p.E157Q	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX16	HGNC	ENSG00000104497	63	0	0	61	27	30.68	-	-	-	G	82736169	C	G	82736169	3	3	727	1	0	0	0	0	1	0	0	0	14976	922	32	2	585	2	SNX16	8	82736169	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14664841	82736169	63627853	427	64133										
E2F5	0	genome.wustl.edu	37	chr8	86127297	86127297	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaaaaaagcattaatctatGatctcataaccattaaagat	4	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	86127297	86127297	G	C	SNP	E2F5	ENST00000519128	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	E2F5	HGNC	ENSG00000133740	27	0	0	26	10	27.78	-	-	-	C	86127297	G	C	86127297	1	2	727	0	1	0	0	0	0	0	0	0	4905	1305	45	2		2	E2F5	8	86127297	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3391128	86127297	60236725	428	64134										
NBN	0	genome.wustl.edu	37	chr8	90965699	90965699	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcttagcttttctgcagcatGagatttactggcagaatttt	8	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	90965699	90965699	G	T	SNP	NBN	ENST00000265433	human	ensembl	69_37n	-1	known	missense	c.1618	p.H540N	0.000	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	161	0	0	130	44	25.29	-	-	-	T	90965699	G	T	90965699	3	4	727	1	0	0	0	0	1	0	0	0	10263	1290	45	2	670	2	NBN	8	90965699	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4838402	90965699	55398323	429	64135										
RAD54B	0	genome.wustl.edu	37	chr8	95419752	95419752	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttggtttacaaacacttttGaaagggttagagaaacattt	8	5	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	95419752	95419752	G	A	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	silent	c.696	p.F232	0.427	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	47	0	0	68	11	13.75	-	-	-	A	95419752	G	A	95419752	2	1	727	1	0	0	0	0	0	0	0	1	13075	1281	45	2		2	RAD54B	8	95419752	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4454053	95419752	50944270	430	64136										
RAD54B	0	genome.wustl.edu	37	chr8	95419786	95419786	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacatttcctggcaacctgaGaagaatgcgagatagcagta	10	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	95419786	95419786	G	C	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.662	p.S221C	0.926	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	68	0	0	61	21	25.3	-	-	-	C	95419786	G	C	95419786	3	2	727	1	0	0	0	0	1	0	0	0	13075	942	33	2	2114	2	RAD54B	8	95419786	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	34	95419786	50944236	431	64137										
C8orf47	0	genome.wustl.edu	37	chr8	99101660	99101660	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagatgcaggagcagggacaGaggccgagtctctaaaagga	15	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	99101660	99101660	G	A	SNP	C8orf47	ENST00000318528	human	ensembl	69_37n	1	known	missense	c.415	p.E139K	0.009	NULL	NULL	-	no_errors	C8orf47	HGNC	ENSG00000177459	31	0	0	21	4	15.38	-	-	-	A	99101660	G	A	99101660	3	1	727	1	0	0	0	0	1	0	0	0	2456	943	33	2	421	2	C8orf47	8	99101660	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3681874	99101660	47262362	432	64138										
GRHL2	0	genome.wustl.edu	37	chr8	102631887	102631887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcgtagcaataaacccattCatagagcttattgccagatc	6	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	102631887	102631887	C	G	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	missense	c.1219	p.H407D	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	66	0	0	64	21	24.71	-	-	-	G	102631887	C	G	102631887	3	3	727	1	0	0	0	0	1	0	0	0	6815	826	29	2	1253	2	GRHL2	8	102631887	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3530227	102631887	43732135	433	64139										
TRHR	0	genome.wustl.edu	37	chr8	110100131	110100131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacatagcaatctgtcacccCatcaaagcccagtttctctg	5	14	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	110100131	110100131	C	T	SNP	TRHR	ENST00000311762	human	ensembl	69_37n	1	known	silent	c.390	p.P130	0.962	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Trelhrm_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Trelhrm_rcpt,prints_Thyrotropin_RHR,prints_7TM_GPCR_Rhodpsn	-	no_errors	TRHR	HGNC	ENSG00000174417	80	0	0	51	18	26.09	-	-	-	T	110100131	C	T	110100131	2	4	727	1	0	0	0	0	0	0	0	1	16576	581	21	4		4	TRHR	8	110100131	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7468244	110100131	36263891	434	64140										
ZHX1	0	genome.wustl.edu	37	chr8	124267582	124267582	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttcaggaacgtcctcaactGagttatgatgaactgcaatc	8	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	124267582	124267582	G	C	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	nonsense	c.605	p.S202*	0.986	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	78	0	0	57	22	27.85	-	-	-	C	124267582	G	C	124267582	4	2	727	1	0	0	0	0	0	1	0	0	17771	1294	45	2	2020	2	ZHX1	8	124267582	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14167451	124267582	22096440	435	64141										
FER1L6	0	genome.wustl.edu	37	chr8	124982322	124982322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caagtgcatctttttgacaaGatcatcaaaatctccgtaag	6	9	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	124982322	124982322	G	C	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.432	p.K144N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	152	0	0	110	36	24.66	-	-	-	C	124982322	G	C	124982322	3	2	727	1	0	0	0	0	1	0	0	0	5861	933	33	2	450	2	FER1L6	8	124982322	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	714740	124982322	21381700	436	64142										
SLA	0	genome.wustl.edu	37	chr8	134050912	134050912	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtaagaggcaatgctctctcGaaggccatagctgaaaaggg	13	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	134050912	134050912	G	C	SNP	SLA	ENST00000427060	human	ensembl	69_37n	-1	known	missense	c.808	p.R270G	0.995	NULL	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA	HGNC	ENSG00000155926	66	0	0	47	13	21.67	-	-	-	C	134050912	G	C	134050912	3	2	727	1	0	0	0	0	1	0	0	0	14452	1066	37	3	146	3	SLA	8	134050912	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9068590	134050912	12313110	437	64143										
PYCRL	0	genome.wustl.edu	37	chr8	144687950	144687950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctcgcagcccgccctgctCcagggcgtggagtccataga	13	15	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	144687950	144687950	C	G	SNP	PYCRL	ENST00000220966	human	ensembl	69_37n	-1	known	missense	c.781	p.E261Q	1.000	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCRL	HGNC	ENSG00000104524	23	0	0	6	4	40	-	-	-	G	144687950	C	G	144687950	3	3	727	1	0	0	0	0	1	0	0	0	12940	864	30	2	83	2	PYCRL	8	144687950	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10637038	144687950	1676072	438	64144										
PUF60	0	genome.wustl.edu	37	chr8	144899196	144899196	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgactcgggaaacagctcctCttcttccttctccttcttgg	7	14	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	144899196	144899196	C	T	SNP	PUF60	ENST00000526683	human	ensembl	69_37n	-1	known	missense	c.1264	p.E422K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950	51	0	0	24	5	17.24	-	-	-	T	144899196	C	T	144899196	3	4	727	1	0	0	0	0	1	0	0	0	12907	922	32	2	423	2	PUF60	8	144899196	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	211246	144899196	1464826	439	64145										
PARP10	0	genome.wustl.edu	37	chr8	145058738	145058738	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccagtcatatccggtccttCaagtggcaagagagcgacgt	12	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	145058738	145058738	C	T	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.1432	p.E478K	0.720	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	37	0	0	26	8	23.53	-	-	-	T	145058738	C	T	145058738	3	4	727	1	0	0	0	0	1	0	0	0	11528	835	29	2	1673	2	PARP10	8	145058738	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	159542	145058738	1305284	440	64146										
PARP10	0	genome.wustl.edu	37	chr8	145058780	145058780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcccaggcccgcaagaaggtCctcatggtagagctgcagga	13	12	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	145058780	145058780	C	T	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.1390	p.D464N	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	40	0	0	19	9	32.14	-	-	-	T	145058780	C	T	145058780	3	4	727	1	0	0	0	0	1	0	0	0	11528	855	30	2	1715	2	PARP10	8	145058780	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	42	145058780	1305242	441	64147										
PARP10	0	genome.wustl.edu	37	chr8	145059210	145059210	+	Missense_Mutation	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctggccagagcctgttgtCataatccctctaccctgcac							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	145059210	145059210	C	T	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.960	p.M320I	0.003	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	41	0	0	22	7	24.14	-	-	-	T	145059210	C	T	145059210	3	4	727	1	0	0	0	0	1	0	0	0	11528	826	29	2	2145	2	PARP10	8	145059210	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	430	145059210	1304812	442	64148	470	2								
PARP10	0	genome.wustl.edu	37	chr8	145059220	145059220	+	Missense_Mutation	SNP	C	C	T													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcctgttgtcataatccctCtaccctgcaccatgggacct							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	145059220	145059220	C	T	SNP	PARP10	ENST00000313028	human	ensembl	69_37n	-1	known	missense	c.950	p.R317K	0.001	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	45	0	0	20	7	25	-	-	-	T	145059220	C	T	145059220	3	4	727	1	0	0	0	0	1	0	0	0	11528	913	32	2	2155	2	PARP10	8	145059220	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10	145059220	1304802	443	64149	470	2								
ZNF16	0	genome.wustl.edu	37	chr8	146171570	146171570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctccatctctgcctcctcaCggcgagttctgaggctgggc	12	15	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	8	146171570	146171570	C	T	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.23	p.R8H	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	22	0	0	11	5	31.25	-	-	-	T	146171570	C	T	146171570	3	4	727	1	0	0	0	0	1	0	0	0	17834	536	19	1	2033	1	ZNF16	8	146171570	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1112350	146171570	192452	444	64150										
SMARCA2	0	genome.wustl.edu	37	chr9	2039663	2039663	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctgcatcagcttcgagctCagattttagcttataaaatg	8	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	2039663	2039663	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	nonsense	c.553	p.Q185*	1.000	pfam_Gln-Leu-Gln_QLQ,smart_Gln-Leu-Gln_QLQ	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	42	0	0	28	4	12.5	-	-	-	T	2039663	C	T	2039663	4	4	727	1	0	0	0	0	0	1	0	0	14858	827	29	2	563	2	SMARCA2	9	2039663	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		2039663	139173768	445	64151										
KCNV2	0	genome.wustl.edu	37	chr9	2729535	2729535	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctgcattgcttttgggatCattctcaacgggatgcccat	9	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	2729535	2729535	C	T	SNP	KCNV2	ENST00000382082	human	ensembl	69_37n	1	known	silent	c.1446	p.I482	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	60	0	0	42	14	24.56	-	-	-	T	2729535	C	T	2729535	2	4	727	1	0	0	0	0	0	0	0	1	8149	816	29	2		2	KCNV2	9	2729535	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	689872	2729535	138483896	446	64152										
RFX3	0	genome.wustl.edu	37	chr9	3275544	3275544	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgcagtgacttgatatcctCaaaggtagtaccatctggca	9	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	3275544	3275544	C	T	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	missense	c.1042	p.E348K	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	95	0	0	61	14	18.67	-	-	-	T	3275544	C	T	3275544	3	4	727	1	0	0	0	0	1	0	0	0	13347	835	29	2	1399	2	RFX3	9	3275544	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	546009	3275544	137937887	447	64153										
ERMP1	0	genome.wustl.edu	37	chr9	5787227	5787227	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttccttcagagcatccagttGaggggatctcttgtcttccc	9	12	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	5787227	5787227	G	C	SNP	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	missense	c.2632	p.Q878E	1.000	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	43	0	0	45	8	15.09	-	-	-	C	5787227	G	C	5787227	3	2	727	1	0	0	0	0	1	0	0	0	5273	1299	45	2	86	2	ERMP1	9	5787227	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2511683	5787227	135426204	448	64154										
PTPRD	0	genome.wustl.edu	37	chr9	8525027	8525027	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcttcactctgctcaatctGaagggctcctgtatggatat	8	11	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	8525027	8525027	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	nonsense	c.577	p.Q193*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	56	0	0	59	9	13.24	-	-	-	A	8525027	G	A	8525027	4	1	727	1	0	0	0	0	0	1	0	0	12882	1299	45	2	5345	2	PTPRD	9	8525027	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2737800	8525027	132688404	449	64155										
SH3GL2	0	genome.wustl.edu	37	chr9	17747112	17747112	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaggaaccaagctagatgatGacttcaaagagatggaaagg	12	5	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	17747112	17747112	G	A	SNP	SH3GL2	ENST00000380607	human	ensembl	69_37n	1	known	missense	c.94	p.D32N	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295	52	0	0	49	15	22.73	-	-	-	A	17747112	G	A	17747112	3	1	727	1	0	0	0	0	1	0	0	0	14340	1290	45	2	100	2	SH3GL2	9	17747112	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9222085	17747112	123466319	450	64156										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18622283	18622283	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggaagcaccgtcaaggaaGataactgtggggtctgcaac	14	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	18622283	18622283	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	missense	c.517	p.D173N	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	70	0	0	47	13	21.67	-	-	-	A	18622283	G	A	18622283	3	1	727	1	0	0	0	0	1	0	0	0	274	942	33	2	535	2	ADAMTSL1	9	18622283	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	875171	18622283	122591148	451	64157										
APTX	0	genome.wustl.edu	37	chr9	33019979	33019979	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attcctggcccttggccacaGacgctgcgtttctgctagga	11	13	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	33019979	33019979	G	A	SNP	APTX	ENST00000489583	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	APTX	HGNC	ENSG00000137074	17	0	0	5	4	44.44	-	-	-	A	33019979	G	A	33019979	1	1	727	0	1	0	0	0	0	0	0	0	822	957	33	2		2	APTX	9	33019979	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	14397696	33019979	108193452	452	64158										
TLN1	0	genome.wustl.edu	37	chr9	35704102	35704102	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcgccaacttctcctggctCccagctgcgttttgcaccag	9	16	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	35704102	35704102	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	silent	c.6117	p.G2039	0.992	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	32	0	0	17	10	37.04	-	-	-	T	35704102	C	T	35704102	2	4	727	1	0	0	0	0	0	0	0	1	16042	842	30	2		2	TLN1	9	35704102	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2684123	35704102	105509329	453	64159										
NPR2	0	genome.wustl.edu	37	chr9	35809214	35809214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatgagctaggatgcttccaGctagagcttcggggggatgt	16	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	35809214	35809214	G	T	SNP	NPR2	ENST00000342694	human	ensembl	69_37n	1	known	missense	c.3048	p.Q1016H	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899	96	0	0	58	9	13.24	-	-	-	T	35809214	G	T	35809214	3	4	727	1	0	0	0	0	1	0	0	0	10668	962	34	4	3130	4	NPR2	9	35809214	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	105112	35809214	105404217	454	64160										
GRHPR	0	genome.wustl.edu	37	chr9	37426094	37426094	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcatatccctcggccattcaGggagaatgtgaggtggctga	14	9	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	37426094	37426094	G	A	SNP	GRHPR	ENST00000487399	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRHPR	HGNC	ENSG00000137106	27	0	0	13	6	31.58	-	-	-	A	37426094	G	A	37426094	1	1	727	0	1	0	0	0	0	0	0	0	6817	1015	35	4		4	GRHPR	9	37426094	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1616880	37426094	103787337	455	64161										
CNTNAP3	0	genome.wustl.edu	37	chr9	39100067	39100067	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggcgtcactgtggctctttCttccagatccagggccaccc	10	15	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	39100067	39100067	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.2836	p.E946K	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	18	0	0	18	9	33.33	-	-	-	T	39100067	C	T	39100067	3	4	727	1	0	0	0	0	1	0	0	0	3678	922	32	2	1058	2	CNTNAP3	9	39100067	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1673973	39100067	102113364	456	64162										
TJP2	0	genome.wustl.edu	37	chr9	71831312	71831312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagagacaacccccactttGaaaatggagaaacgtcaatt	8	10	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	71831312	71831312	G	C	SNP	TJP2	ENST00000539225	human	ensembl	69_37n	1	known	missense	c.265	p.E89Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	69	0	0	46	18	28.12	-	-	-	C	71831312	G	C	71831312	3	2	727	1	0	0	0	0	1	0	0	0	16025	1291	45	2	339	2	TJP2	9	71831312	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	32731245	71831312	69382119	457	64163										
VPS13A	0	genome.wustl.edu	37	chr9	79853230	79853230	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aattcttcagacctccaaaaGaggtacatctagcacagctc	6	12	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	79853230	79853230	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.1828	p.E610K	0.989	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	81	0	0	63	24	27.27	-	-	-	A	79853230	G	A	79853230	3	1	727	1	0	0	0	0	1	0	0	0	17286	943	33	2	1902	2	VPS13A	9	79853230	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8021918	79853230	61360201	458	64164										
RASEF	0	genome.wustl.edu	37	chr9	85615118	85615118	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atattttctcgaaattcattCttgcaaagtctcatgaggaa	6	7	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	85615118	85615118	C	G	SNP	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	missense	c.1689	p.K563N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	95	0	0	53	20	27.4	-	-	-	G	85615118	C	G	85615118	3	3	727	1	0	0	0	0	1	0	0	0	13151	912	32	2	557	2	RASEF	9	85615118	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5761888	85615118	55598313	459	64165										
SEMA4D	0	genome.wustl.edu	37	chr9	91977111	91977111	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taattttttaagtcttagttCctgtcacaggcccacttggg	8	9	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	91977111	91977111	C	G	SNP	SEMA4D	ENST00000469653	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEMA4D	HGNC	ENSG00000187764	17	0	0	21	9	30	-	-	-	G	91977111	C	G	91977111	1	3	727	0	1	0	0	0	0	0	0	0	14122	870	30	2		2	SEMA4D	9	91977111	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6361993	91977111	49236320	460	64166										
ZNF484	0	genome.wustl.edu	37	chr9	95609508	95609508	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctgcatttataaggtttctCtccagtatgaattttttggt	8	6	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	95609508	95609508	C	T	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.1567	p.E523K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	76	0	0	58	26	30.59	-	-	-	T	95609508	C	T	95609508	3	4	727	1	0	0	0	0	1	0	0	0	18033	922	32	2	1001	2	ZNF484	9	95609508	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3632397	95609508	45603923	461	64167										
ZNF510	0	genome.wustl.edu	37	chr9	99521982	99521982	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcttattttcatgatattcaGaggatttaacccaagtctgt	6	7	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	99521982	99521982	G	C	SNP	ZNF510	ENST00000223428	human	ensembl	69_37n	-1	known	missense	c.1130	p.S377C	0.070	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386	94	0	0	75	23	23.47	-	-	-	C	99521982	G	C	99521982	3	2	727	1	0	0	0	0	1	0	0	0	18050	942	33	2	925	2	ZNF510	9	99521982	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3912474	99521982	41691449	462	64168										
NANS	0	genome.wustl.edu	37	chr9	100840472	100840472	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggtgttggtgctggattactCaggtcgcccaatggtgatct	14	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	100840472	100840472	C	G	SNP	NANS	ENST00000415280	human	ensembl	69_37n	1	known	nonsense	c.23	p.S8*	0.969	pfam_Neu5Ac_N	pfam_Neu5Ac_N	-	no_stop_codon	NANS	HGNC	ENSG00000095380	82	0	0	51	23	30.67	-	-	-	G	100840472	C	G	100840472	4	3	727	1	0	0	0	0	0	1	0	0	10227	841	29	2		2	NANS	9	100840472	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1318490	100840472	40372959	463	64169										
GALNT12	0	genome.wustl.edu	37	chr9	101597549	101597549	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggtctccaacaatggctggTgggctgtttgctgtgagtaa	14	7	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	101597549	101597549	T	G	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	silent	c.936	p.G312	0.816	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	169	1	0.59	120	40	25	-	-	-	G	101597549	T	G	101597549	2	3	727	1	0	0	0	0	0	0	0	1	6260	1683	59	5		5	GALNT12	9	101597549	Silent	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	757077	101597549	39615882	464	64170										
OR13F1	0	genome.wustl.edu	37	chr9	107266827	107266827	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagaaacactatttcattctCagggtgcgccactcagatgt	9	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	107266827	107266827	C	T	SNP	OR13F1	ENST00000334726	human	ensembl	69_37n	1	known	missense	c.284	p.S95L	0.040	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881	63	0	0	36	13	26	-	-	-	T	107266827	C	T	107266827	3	4	727	1	0	0	0	0	1	0	0	0	11014	838	29	2	286	2	OR13F1	9	107266827	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5669278	107266827	33946604	465	64171										
C9orf84	0	genome.wustl.edu	37	chr9	114454003	114454003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acagatggtaattctctccaGaaagtctcatcttttgaact	6	9	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	114454003	114454003	G	C	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.4062	p.F1354L	0.004	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	66	0	0	60	20	24.69	-	-	-	C	114454003	G	C	114454003	3	2	727	1	0	0	0	0	1	0	0	0	2525	933	33	2	280	2	C9orf84	9	114454003	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7187176	114454003	26759428	466	64172										
C9orf84	0	genome.wustl.edu	37	chr9	114454075	114454075	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agacatttttgctgatcagtGaataaattacctttctgaga	7	6	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	114454075	114454075	G	A	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	silent	c.3990	p.F1330	0.065	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	65	0	0	49	15	23.44	-	-	-	A	114454075	G	A	114454075	2	1	727	1	0	0	0	0	0	0	0	1	2525	1281	45	2		2	C9orf84	9	114454075	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	72	114454075	26759356	467	64173										
C9orf84	0	genome.wustl.edu	37	chr9	114454484	114454484	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctatattagatttacagctgGagtctttccagtagctggtc	9	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	114454484	114454484	G	C	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.3581	p.S1194C	0.006	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	60	0	0	62	10	13.89	-	-	-	C	114454484	G	C	114454484	3	2	727	1	0	0	0	0	1	0	0	0	2525	1174	41	2	761	2	C9orf84	9	114454484	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	409	114454484	26758947	468	64174										
SLC31A2	0	genome.wustl.edu	37	chr9	115925089	115925089	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atccaggtggtcatcggctaCttcatcatgctggccgtaat	10	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	115925089	115925089	C	A	SNP	SLC31A2	ENST00000259392	human	ensembl	69_37n	1	known	nonsense	c.324	p.Y108*	1.000	pfam_Cop_transporter	pfam_Cop_transporter	-	no_errors	SLC31A2	HGNC	ENSG00000136867	143	0	0	110	19	14.73	-	-	-	A	115925089	C	A	115925089	4	1	727	1	0	0	0	0	0	1	0	0	14653	576	20	4	338	4	SLC31A2	9	115925089	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1470605	115925089	25288342	469	64175										
TLR4	0	genome.wustl.edu	37	chr9	120476417	120476417	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcataaagtatggtagaggtGaaaacatctatgatgccttt	10	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	120476417	120476417	G	A	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.2011	p.E671K	0.963	pirsf_Toll-like_receptor,superfamily_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	76	0	0	95	14	12.84	-	-	-	A	120476417	G	A	120476417	3	1	727	1	0	0	0	0	1	0	0	0	16048	1291	45	2	2021	2	TLR4	9	120476417	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4551328	120476417	20737014	470	64176										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123301349	123301349	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggagtattcttttagttagGagatcttccacctgctgcac	9	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	123301349	123301349	G	C	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	silent	c.477	p.L159	0.583	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	153	0	0	94	25	21.01	-	-	-	C	123301349	G	C	123301349	2	2	727	1	0	0	0	0	0	0	0	1	3175	1161	41	2		2	CDK5RAP2	9	123301349	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2824932	123301349	17912082	471	64177										
MEGF9	0	genome.wustl.edu	37	chr9	123374719	123374719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cactgctgaacaagggcagcGaagacattctttagtggcat	11	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	123374719	123374719	G	A	SNP	MEGF9	ENST00000426959	human	ensembl	69_37n	-1	known	missense	c.1153	p.R385C	1.000	smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780	99	0	0	74	15	16.85	-	-	-	A	123374719	G	A	123374719	3	1	727	1	0	0	0	0	1	0	0	0	9535	1058	37	1	778	1	MEGF9	9	123374719	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	73370	123374719	17838712	472	64178										
FBXW2	0	genome.wustl.edu	37	chr9	123527031	123527031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caggctctctgtccgcaagtCcatgatgtacaggtagcggt	12	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	123527031	123527031	C	T	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	missense	c.1171	p.D391N	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	38	0	0	31	14	31.11	-	-	-	T	123527031	C	T	123527031	3	4	727	1	0	0	0	0	1	0	0	0	5812	855	30	2	197	2	FBXW2	9	123527031	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	152312	123527031	17686400	473	64179										
FBXW2	0	genome.wustl.edu	37	chr9	123535049	123535049	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccttaatctcatatttgtCtgcacttaagaggatgtagt	7	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	123535049	123535049	C	T	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	missense	c.889	p.D297N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	47	0	0	33	11	25	-	-	-	T	123535049	C	T	123535049	3	4	727	1	0	0	0	0	1	0	0	0	5812	913	32	2	487	2	FBXW2	9	123535049	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8018	123535049	17678382	474	64180										
RC3H2	0	genome.wustl.edu	37	chr9	125659702	125659702	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgtgtgaacaacctaaactGatgggtttgtgcacattctc	10	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	125659702	125659702	G	A	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	silent	c.87	p.I29	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	61	0	0	53	20	27.4	-	-	-	A	125659702	G	A	125659702	2	1	727	1	0	0	0	0	0	0	0	1	13250	1280	45	2		2	RC3H2	9	125659702	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2124653	125659702	15553729	475	64181										
NEK6	0	genome.wustl.edu	37	chr9	127101933	127101933	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatctggtccctgggctgtCtgctgtacgaggtgagtctc	13	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	127101933	127101933	C	G	SNP	NEK6	ENST00000373600	human	ensembl	69_37n	1	known	missense	c.808	p.L270V	0.906	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408	89	0	0	37	15	28.85	-	-	-	G	127101933	C	G	127101933	3	3	727	1	0	0	0	0	1	0	0	0	10400	912	32	2	917	2	NEK6	9	127101933	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1442231	127101933	14111498	476	64182										
MAPKAP1	0	genome.wustl.edu	37	chr9	128347943	128347943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggtcattggcagcagtctgtCctggctcgagtgcagaggga	16	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	128347943	128347943	C	T	SNP	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	missense	c.562	p.D188N	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	100	0	0	44	11	20	-	-	-	T	128347943	C	T	128347943	3	4	727	1	0	0	0	0	1	0	0	0	9359	855	30	2	1056	2	MAPKAP1	9	128347943	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1246010	128347943	12865488	477	64183										
ENG	0	genome.wustl.edu	37	chr9	130579444	130579444	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaccagacaggtcagggctGatgatgttcaagcgcatgaa	12	9	3	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	130579444	130579444	G	A	SNP	ENG	ENST00000373203	human	ensembl	69_37n	-1	known	silent	c.1725	p.I575	0.997	NULL	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	55	0	0	28	19	40.43	-	-	-	A	130579444	G	A	130579444	2	1	727	1	0	0	0	0	0	0	0	1	5154	1280	45	2		2	ENG	9	130579444	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2231501	130579444	10633987	478	64184										
LRRC8A	0	genome.wustl.edu	37	chr9	131670394	131670394	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcccaccccctggccacactCttcaagatcctggcgtcctt	7	19	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	131670394	131670394	C	G	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	silent	c.951	p.L317	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	75	0	0	29	14	31.82	-	-	-	G	131670394	C	G	131670394	2	3	727	1	0	0	0	0	0	0	0	1	9087	900	32	2		2	LRRC8A	9	131670394	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1090950	131670394	9543037	479	64185										
NUP214	0	genome.wustl.edu	37	chr9	134049692	134049692	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catggttcttcacctggtgtGatgggaacttcaggtaagta	12	7	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	134049692	134049692	G	A	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	silent	c.3147	p.V1049	0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	27	0	0	13	10	43.48	-	-	-	A	134049692	G	A	134049692	2	1	727	1	0	0	0	0	0	0	0	1	10835	1277	45	2		2	NUP214	9	134049692	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2379298	134049692	7163739	480	64186										
ADAMTS13	0	genome.wustl.edu	37	chr9	136305542	136305542	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccacctacccctccctcctgGaggatggtcgtgtcgagtac	10	16	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	9	136305542	136305542	G	C	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.1864	p.E622Q	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	42	0	0	14	4	22.22	-	-	-	C	136305542	G	C	136305542	3	2	727	1	0	0	0	0	1	0	0	0	258	1175	41	2	1926	2	ADAMTS13	9	136305542	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2255850	136305542	4907889	481	64187										
LARP4B	0	genome.wustl.edu	37	chr10	890933	890933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttacctagataagcagaattCcaatgtttttttaagtactt	5	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	890933	890933	C	T	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.493	p.E165K	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	96	0	0	90	25	21.55	-	-	-	T	890933	C	T	890933	3	4	727	1	0	0	0	0	1	0	0	0	8685	864	30	2	1775	2	LARP4B	10	890933	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		890933	134643814	482	64188										
LARP4B	0	genome.wustl.edu	37	chr10	890992	890992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtctggttgagactcatttCctcctacataaaagtaataa	6	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	890992	890992	C	A	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.434	p.G145V	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	91	0	0	64	33	33.33	-	-	-	A	890992	C	A	890992	3	1	727	1	0	0	0	0	1	0	0	0	8685	855	30	2	1834	2	LARP4B	10	890992	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	59	890992	134643755	483	64189										
IDI1	0	genome.wustl.edu	37	chr10	1089321	1089321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ataagaagacactaaaagctCgatgcaataatcctgaaagc	7	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	1089321	1089321	C	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.326	p.R109Q	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	70	0	0	59	18	23.38	-	-	-	T	1089321	C	T	1089321	3	4	727	1	0	0	0	0	1	0	0	0	7553	884	31	1	540	1	IDI1	10	1089321	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	198329	1089321	134445426	484	64190										
GDI2	0	genome.wustl.edu	37	chr10	5827855	5827855	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagagcatgaccagtaaaatCtataacgtcttgacccaaat	6	9	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	5827855	5827855	C	G	SNP	GDI2	ENST00000380132	human	ensembl	69_37n	-1	known	missense	c.559	p.D187H	1.000	pfam_GDP_dissociation_inhibitor,prints_RabGDI	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608	60	0	0	62	21	25.3	-	-	-	G	5827855	C	G	5827855	3	3	727	1	0	0	0	0	1	0	0	0	6373	913	32	2	818	2	GDI2	10	5827855	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4738534	5827855	129706892	485	64191										
GDI2	0	genome.wustl.edu	37	chr10	5827883	5827883	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcttgacccaaatcaaatttCttatacacatctcgcattgt	3	11	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	5827883	5827883	C	T	SNP	GDI2	ENST00000380132	human	ensembl	69_37n	-1	known	silent	c.531	p.K177	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608	77	0	0	71	25	26.04	-	-	-	T	5827883	C	T	5827883	2	4	727	1	0	0	0	0	0	0	0	1	6373	912	32	2		2	GDI2	10	5827883	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	28	5827883	129706864	486	64192										
CELF2	0	genome.wustl.edu	37	chr10	11259429	11259429	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atacaagaaaagctgcacttGaggcccagaatgcactgcac	9	11	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	11259429	11259429	G	C	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	missense	c.313	p.E105Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	110	0	0	108	13	10.66	-	-	-	C	11259429	G	C	11259429	3	2	727	1	0	0	0	0	1	0	0	0	3245	1291	45	2	380	2	CELF2	10	11259429	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5431546	11259429	124275318	487	64193										
TRDMT1	0	genome.wustl.edu	37	chr10	17203488	17203488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atacatttttttaccttgtaGaagatacttcaaaaccttta	3	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	17203488	17203488	G	A	SNP	TRDMT1	ENST00000377799	human	ensembl	69_37n	-1	known	missense	c.383	p.S128F	1.000	pfam_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614	77	0	0	69	19	21.35	-	-	-	A	17203488	G	A	17203488	3	1	727	1	0	0	0	0	1	0	0	0	16563	942	33	2	820	2	TRDMT1	10	17203488	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5944059	17203488	118331259	488	64194										
GPR158	0	genome.wustl.edu	37	chr10	25701277	25701277	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agggctgccccttctgtgctGatgacagcccatgcttcgtc	11	14	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	25701277	25701277	G	T	SNP	GPR158	ENST00000376351	human	ensembl	69_37n	1	known	missense	c.1210	p.D404Y	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	65	0	0	52	12	18.75	-	-	-	T	25701277	G	T	25701277	3	4	727	1	0	0	0	0	1	0	0	0	6713	1290	45	2	1224	2	GPR158	10	25701277	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8497789	25701277	109833470	489	64195										
MYO3A	0	genome.wustl.edu	37	chr10	26465629	26465629	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacacatgaccttctttttaGatatcaaagttatctgaaga	6	7	3	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	26465629	26465629	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	splice_site	c.4294-1	e29-1	1.000	-	-	-	no_errors	MYO3A	HGNC	ENSG00000095777	46	0	0	34	6	15	-	-	-	A	26465629	G	A	26465629	5	1	727	1	0	0	0	0	0	0	1	0	10148	956	33	2	4407	2	MYO3A	10	26465629	Splice_Site	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	764352	26465629	109069118	490	64196										
WAC	0	genome.wustl.edu	37	chr10	28872429	28872429	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ataacccaagcaaaacttcaGatgcagtaagtattataaac	5	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	28872429	28872429	G	C	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.376	p.D126H	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	86	0	0	42	18	30	-	-	-	C	28872429	G	C	28872429	3	2	727	1	0	0	0	0	1	0	0	0	17344	942	33	2	390	2	WAC	10	28872429	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2406800	28872429	106662318	491	64197										
ZNF239	0	genome.wustl.edu	37	chr10	44053111	44053111	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gattcttttaactggccattCtggcaagttgcctcaccatt	7	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	44053111	44053111	C	G	SNP	ZNF239	ENST00000306006	human	ensembl	69_37n	-1	known	missense	c.417	p.Q139H	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793	70	0	0	66	20	23.26	-	-	-	G	44053111	C	G	44053111	3	3	727	1	0	0	0	0	1	0	0	0	17887	912	32	2	963	2	ZNF239	10	44053111	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	15180682	44053111	91481636	492	64198										
GPRIN2	0	genome.wustl.edu	37	chr10	46999421	46999421	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggacctggctcctgaggatGagacttctaactcagcctgg	13	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	46999421	46999421	G	A	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.541	p.E181K	0.043	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	37	0	0	14	4	21.05	-	-	-	A	46999421	G	A	46999421	3	1	727	1	0	0	0	0	1	0	0	0	6781	1291	45	2	543	2	GPRIN2	10	46999421	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2946310	46999421	88535326	493	64199										
DRGX	0	genome.wustl.edu	37	chr10	50599324	50599324	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgcctaccaagagcaaactGatcaacctgggcaggaaggg	13	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	50599324	50599324	G	A	SNP	DRGX	ENST00000434016	human	ensembl	69_37n	-1	known	silent	c.33	p.I11	0.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DRGX	HGNC	ENSG00000165606	34	0	0	26	11	29.73	-	-	-	A	50599324	G	A	50599324	2	1	727	1	0	0	0	0	0	0	0	1	4798	1280	45	2		2	DRGX	10	50599324	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3599903	50599324	84935423	494	64200										
CSTF2T	0	genome.wustl.edu	37	chr10	53457842	53457842	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggacctgtctgggtccctGaggagggccacctgccccta	14	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	53457842	53457842	G	A	SNP	CSTF2T	ENST00000331173	human	ensembl	69_37n	-1	known	nonsense	c.1468	p.Q490*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613	56	0	0	34	9	20.93	-	-	-	A	53457842	G	A	53457842	4	1	727	1	0	0	0	0	0	1	0	0	4017	1299	45	2	386	2	CSTF2T	10	53457842	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2858518	53457842	82076905	495	64201										
BICC1	0	genome.wustl.edu	37	chr10	60553331	60553331	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgcagttgatggaacagcttGatgtcttcatcagtattaaa	9	7	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	60553331	60553331	G	A	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.1135	p.D379N	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	93	0	0	111	17	13.28	-	-	-	A	60553331	G	A	60553331	3	1	727	1	0	0	0	0	1	0	0	0	1432	1290	45	2	1169	2	BICC1	10	60553331	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7095489	60553331	74981416	496	64202										
FAM13C	0	genome.wustl.edu	37	chr10	61122179	61122179	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgttacagtggtgctgctGaaggaattatcctgaaggct	12	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	61122179	61122179	G	A	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	silent	c.42	p.F14	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	80	0	0	49	21	29.58	-	-	-	A	61122179	G	A	61122179	2	1	727	1	0	0	0	0	0	0	0	1	5494	1281	45	2		2	FAM13C	10	61122179	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	568848	61122179	74412568	497	64203										
ARID5B	0	genome.wustl.edu	37	chr10	63851361	63851361	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctacccttatggctccccAccccctttgatcagcaaaaa	5	16	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	63851361	63851361	A	C	SNP	ARID5B	ENST00000279873	human	ensembl	69_37n	1	known	silent	c.2139	p.P713	0.946	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347	62	0	0	24	7	21.88	-	-	-	C	63851361	A	C	63851361	2	2	727	1	0	0	0	0	0	0	0	1	924	146	6	5		5	ARID5B	10	63851361	Silent	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	2729182	63851361	71683386	498	64204										
VCL	0	genome.wustl.edu	37	chr10	75868884	75868884	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgatggctgccagacagctCcatgatgaagctcgcaaatg	11	10	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	75868884	75868884	C	T	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	silent	c.2715	p.L905	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	25	0	0	19	14	42.42	-	-	-	T	75868884	C	T	75868884	2	4	727	1	0	0	0	0	0	0	0	1	17236	842	30	2		2	VCL	10	75868884	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	12017523	75868884	59665863	499	64205										
PPIF	0	genome.wustl.edu	37	chr10	81113562	81113562	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagagtgggaggacatccaaGaagattgtcatcacagactg	12	7	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	81113562	81113562	G	A	SNP	PPIF	ENST00000225174	human	ensembl	69_37n	1	known	silent	c.588	p.K196	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIF	HGNC	ENSG00000108179	66	0	0	36	6	14.29	-	-	-	A	81113562	G	A	81113562	2	1	727	1	0	0	0	0	0	0	0	1	12400	933	33	2		2	PPIF	10	81113562	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5244678	81113562	54421185	500	64206										
CDHR1	0	genome.wustl.edu	37	chr10	85961629	85961629	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctccaggctggggccactCtggactacgagaggtcccgg	15	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	85961629	85961629	C	G	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	missense	c.592	p.L198V	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	71	0	0	51	10	16.13	-	-	-	G	85961629	C	G	85961629	3	3	727	1	0	0	0	0	1	0	0	0	3147	912	32	2	618	2	CDHR1	10	85961629	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4848067	85961629	49573118	501	64207										
FAM190B	0	genome.wustl.edu	37	chr10	86185546	86185546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaatgttcggcagcctcagGaaggtttttggaaaaggcca	13	7	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	86185546	86185546	G	A	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.1765	p.E589K	1.000	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	57	0	0	51	9	15	-	-	-	A	86185546	G	A	86185546	3	1	727	1	0	0	0	0	1	0	0	0	5564	1175	41	2	1779	2	FAM190B	10	86185546	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	223917	86185546	49349201	502	64208										
RNLS	0	genome.wustl.edu	37	chr10	90332723	90332723	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cattgtgagaacaataagatCaaactgctcaggggagcctg	11	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	90332723	90332723	C	T	SNP	RNLS	ENST00000331772	human	ensembl	69_37n	-1	known	missense	c.463	p.D155N	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	68	0	0	60	19	23.75	-	-	-	T	90332723	C	T	90332723	3	4	727	1	0	0	0	0	1	0	0	0	13591	826	29	2	657	2	RNLS	10	90332723	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4147177	90332723	45202024	503	64209										
LIPN	0	genome.wustl.edu	37	chr10	90521981	90521981	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaatggctaccccagtgaaGagtatgaagtcaccactgaa	9	10	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	90521981	90521981	G	C	SNP	LIPN	ENST00000404459	human	ensembl	69_37n	1	known	missense	c.145	p.E49Q	1.000	pfam_AB_hydrolase_lipase	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPN	HGNC	ENSG00000204020	73	0	0	31	13	28.89	-	-	-	C	90521981	G	C	90521981	3	2	727	1	0	0	0	0	1	0	0	0	8884	943	33	2	151	2	LIPN	10	90521981	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	189258	90521981	45012766	504	64210										
IDE	0	genome.wustl.edu	37	chr10	94291539	94291539	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgaaggggtgtttaggattCcctgtagctttttccaattg	11	7	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	94291539	94291539	C	T	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	silent	c.627	p.G209	0.988	pfam_Pept_M16_N,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	75	0	0	61	19	23.46	-	-	-	T	94291539	C	T	94291539	2	4	727	1	0	0	0	0	0	0	0	1	7547	842	30	2		2	IDE	10	94291539	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3769558	94291539	41243208	505	64211										
CYP2C19	0	genome.wustl.edu	37	chr10	96602677	96602677	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggggccacatgccctacacaGatgctgtggtgcacgaggtc	14	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	96602677	96602677	G	A	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.1045	p.D349N	0.984	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	87	0	0	58	26	30.59	-	-	-	A	96602677	G	A	96602677	3	1	727	1	0	0	0	0	1	0	0	0	4197	942	33	2	1071	2	CYP2C19	10	96602677	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2311138	96602677	38932070	506	64212										
SORBS1	0	genome.wustl.edu	37	chr10	97117484	97117484	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttttataaatttgtctctCattctccaagctagtgagat	5	8	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	97117484	97117484	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.2032	p.E678K	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	63	0	0	38	16	29.63	-	-	-	T	97117484	C	T	97117484	3	4	727	1	0	0	0	0	1	0	0	0	15016	835	29	2	1954	2	SORBS1	10	97117484	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	514807	97117484	38417263	507	64213										
C10orf12	0	genome.wustl.edu	37	chr10	98741670	98741670	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caataacagaatgccactttGagaatcaaaaatcaatatta	4	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	98741670	98741670	G	C	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	1	known	missense	c.523	p.E175Q	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	29	0	0	35	9	20.45	-	-	-	C	98741670	G	C	98741670	3	2	727	1	0	0	0	0	1	0	0	0	1599	1291	45	2	525	2	C10orf12	10	98741670	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1624186	98741670	36793077	508	64214										
ZDHHC16	0	genome.wustl.edu	37	chr10	99216747	99216747	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagaatccttgatcaaaaaGagccagtgggcctgccttag	10	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	99216747	99216747	G	C	SNP	ZDHHC16	ENST00000487315	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ZDHHC16	HGNC	ENSG00000171307	9	0	0	5	5	50	-	-	-	C	99216747	G	C	99216747	1	2	727	0	1	0	0	0	0	0	0	0	17702	957	33	2		2	ZDHHC16	10	99216747	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	475077	99216747	36318000	509	64215										
HPSE2	0	genome.wustl.edu	37	chr10	100503657	100503657	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taccattacccagttcccaaGaaatgttgtactttttgctg	6	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	100503657	100503657	G	C	SNP	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	missense	c.767	p.S256C	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	62	0	0	58	22	27.16	-	-	-	C	100503657	G	C	100503657	3	2	727	1	0	0	0	0	1	0	0	0	7396	942	33	2	1085	2	HPSE2	10	100503657	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1286910	100503657	35031090	510	64216										
ERLIN1	0	genome.wustl.edu	37	chr10	101927112	101927112	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcatattactcacattaactCaaaatttcttcttatggctt	3	9	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	101927112	101927112	C	G	SNP	ERLIN1	ENST00000407654	human	ensembl	69_37n	-1	known	missense	c.556	p.E186Q	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN1	HGNC	ENSG00000107566	129	0	0	105	28	21.05	-	-	-	G	101927112	C	G	101927112	3	3	727	1	0	0	0	0	1	0	0	0	5269	835	29	2	510	2	ERLIN1	10	101927112	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1423455	101927112	33607635	511	64217										
BTRC	0	genome.wustl.edu	37	chr10	103285793	103285793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggggattggatcatattgctGagaacattctgtcatacctg	11	7	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	103285793	103285793	G	C	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	1	known	missense	c.580	p.E194Q	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	66	0	0	57	23	28.75	-	-	-	C	103285793	G	C	103285793	3	2	727	1	0	0	0	0	1	0	0	0	1578	1291	45	2	602	2	BTRC	10	103285793	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1358681	103285793	32248954	512	64218										
FBXW4	0	genome.wustl.edu	37	chr10	103384621	103384621	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcttgtcagaacctgtggtgGaaatggctaacaatgggaaa	13	6	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	103384621	103384621	G	C	SNP	FBXW4	ENST00000470093	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	FBXW4	HGNC	ENSG00000107829	29	0	0	19	11	36.67	-	-	-	C	103384621	G	C	103384621	1	2	727	0	1	0	0	0	0	0	0	0	5813	1189	41	2		2	FBXW4	10	103384621	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	98828	103384621	32150126	513	64219										
MGEA5	0	genome.wustl.edu	37	chr10	103569984	103569984	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggatacttccttggggttaGaaaaagtgatatccaatcca	9	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	103569984	103569984	G	A	SNP	MGEA5	ENST00000361464	human	ensembl	69_37n	-1	known	missense	c.437	p.S146F	1.000	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	70	0	0	36	10	21.74	-	-	-	A	103569984	G	A	103569984	3	1	727	1	0	0	0	0	1	0	0	0	9626	942	33	2	2365	2	MGEA5	10	103569984	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	185363	103569984	31964763	514	64220										
TMEM180	0	genome.wustl.edu	37	chr10	104231094	104231094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcatcaccttgggccggtatCtccggcagctggcacgccat	12	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	104231094	104231094	C	T	SNP	TMEM180	ENST00000238936	human	ensembl	69_37n	1	known	missense	c.769	p.L257F	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111	57	0	0	23	7	23.33	-	-	-	T	104231094	C	T	104231094	3	4	727	1	0	0	0	0	1	0	0	0	16194	913	32	2	783	2	TMEM180	10	104231094	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	661110	104231094	31303653	515	64221										
NEURL	0	genome.wustl.edu	37	chr10	105331386	105331386	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctggtgtcccagagtggcttCtgggccaaggcgctgcctga	15	12	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	105331386	105331386	C	T	SNP	NEURL	ENST00000369780	human	ensembl	69_37n	1	known	silent	c.456	p.F152	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954	54	0	0	23	9	28.12	-	-	-	T	105331386	C	T	105331386	2	4	727	1	0	0	0	0	0	0	0	1	10417	912	32	2		2	NEURL	10	105331386	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1100292	105331386	30203361	516	64222										
SLK	0	genome.wustl.edu	37	chr10	105758977	105758977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcactttaatagaaatggctGagatagaaccacctcatcat	6	9	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	105758977	105758977	G	A	SNP	SLK	ENST00000369755	human	ensembl	69_37n	1	known	missense	c.688	p.E230K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	41	0	0	38	7	15.56	-	-	-	A	105758977	G	A	105758977	3	1	727	1	0	0	0	0	1	0	0	0	14837	1291	45	2	710	2	SLK	10	105758977	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	427591	105758977	29775770	517	64223										
SMC3	0	genome.wustl.edu	37	chr10	112362728	112362728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttgatgaaattgaccaggCtctggatgctcagcacagaa	11	8	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	112362728	112362728	C	T	SNP	SMC3	ENST00000361804	human	ensembl	69_37n	1	known	missense	c.3443	p.A1148V	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055	84	0	0	79	16	16.84	-	-	-	T	112362728	C	T	112362728	3	4	727	1	0	0	0	0	1	0	0	0	14873	797	28	4	3549	4	SMC3	10	112362728	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6603751	112362728	23172019	518	64224										
AFAP1L2	0	genome.wustl.edu	37	chr10	116055702	116055702	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcagtctttgctttttcttCtaaacagactcaccctttcg	4	13	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	116055702	116055702	C	G	SNP	AFAP1L2	ENST00000491814	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.667	-	-	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	49	0	0	54	6	10	-	-	-	G	116055702	C	G	116055702	1	3	727	0	1	0	0	0	0	0	0	0	355	928	32	2		2	AFAP1L2	10	116055702	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3692974	116055702	19479045	519	64225										
ABLIM1	0	genome.wustl.edu	37	chr10	116225386	116225386	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgatttttcaatgtgctatCaatagtaggggaaaaaatca	8	4	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	116225386	116225386	C	T	SNP	ABLIM1	ENST00000466400	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABLIM1	HGNC	ENSG00000099204	41	0	0	31	18	36.73	-	-	-	T	116225386	C	T	116225386	1	4	727	0	1	0	0	0	0	0	0	0	94	841	29	2		2	ABLIM1	10	116225386	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	169684	116225386	19309361	520	64226										
PRDX3	0	genome.wustl.edu	37	chr10	120936582	120936582	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccagaacacaataaatttgtCaagctcgttcttccacatgc	5	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	120936582	120936582	C	T	SNP	PRDX3	ENST00000298510	human	ensembl	69_37n	-1	known	silent	c.120	p.L40	0.015	NULL	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX3	HGNC	ENSG00000165672	38	0	0	33	10	23.26	-	-	-	T	120936582	C	T	120936582	2	4	727	1	0	0	0	0	0	0	0	1	12547	825	29	2		2	PRDX3	10	120936582	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4711196	120936582	14598165	521	64227										
C10orf137	0	genome.wustl.edu	37	chr10	127412419	127412419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaattccctacagcaagtcgCacgtgagcatggcagtacac	9	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	127412419	127412419	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	69_37n	1	known	missense	c.424	p.H142Y	0.996	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938	63	0	0	43	12	21.82	-	-	-	T	127412419	C	T	127412419	3	4	727	1	0	0	0	0	1	0	0	0	1604	710	25	4	438	4	C10orf137	10	127412419	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6475837	127412419	8122328	522	64228										
DOCK1	0	genome.wustl.edu	37	chr10	129160347	129160347	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggtcaacacaagataaagttCattccagaaatggtgggccc	10	9	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	129160347	129160347	C	A	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.3240	p.F1080L	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	36	0	0	54	8	12.9	-	-	-	A	129160347	C	A	129160347	3	1	727	1	0	0	0	0	1	0	0	0	4719	825	29	2	3370	2	DOCK1	10	129160347	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1747928	129160347	6374400	523	64229										
LRRC27	0	genome.wustl.edu	37	chr10	134151163	134151163	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctggacctccggtacaataGaattaaagcgcttccttctg	9	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	134151163	134151163	G	C	SNP	LRRC27	ENST00000368613	human	ensembl	69_37n	1	known	missense	c.305	p.R102T	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814	77	0	0	64	26	28.89	-	-	-	C	134151163	G	C	134151163	3	2	727	1	0	0	0	0	1	0	0	0	9047	942	33	2	311	2	LRRC27	10	134151163	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4990816	134151163	1383584	524	64230										
MTG1	0	genome.wustl.edu	37	chr10	135215105	135215105	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaaattcaggtggagtcctCaggggccaggcccagcactc	12	13	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	10	135215105	135215105	C	T	SNP	MTG1	ENST00000460848	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTG1	Clone_based_vega_gene	ENSG00000148824	38	0	0	29	4	12.12	-	-	-	T	135215105	C	T	135215105	1	4	727	0	1	0	0	0	0	0	0	0	9998	841	29	2		2	MTG1	10	135215105	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1063942	135215105	319642	525	64231										
CARS	0	genome.wustl.edu	37	chr11	3069055	3069055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctatgtgcctgaaccaccGagccacgtggaagagctggg	13	11	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	3069055	3069055	G	A	SNP	CARS	ENST00000380525	human	ensembl	69_37n	-1	known	missense	c.202	p.R68W	1.000	superfamily_Glutathione-S-Trfase_C-like	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS	HGNC	ENSG00000110619	43	0	0	16	6	27.27	-	-	-	A	3069055	G	A	3069055	3	1	727	1	0	0	0	0	1	0	0	0	2682	1057	37	1	2436	1	CARS	11	3069055	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		3069055	131937461	526	64232										
OR51T1	0	genome.wustl.edu	37	chr11	4903616	4903616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttcttacttccccttcttGtagccataaacactgtgtct	4	12	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	4903616	4903616	G	T	SNP	OR51T1	ENST00000380378	human	ensembl	69_37n	1	known	missense	c.568	p.V190L	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900	88	0	0	78	11	12.36	-	-	-	T	4903616	G	T	4903616	3	4	727	1	0	0	0	0	1	0	0	0	11179	1377	48	4	570	4	OR51T1	11	4903616	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1834561	4903616	130102900	527	64233										
TRIM6	0	genome.wustl.edu	37	chr11	5618077	5618077	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggattgctctgaagagctttGaccacctgatattgcttaca	9	9	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	5618077	5618077	G	C	SNP	TRIM6	ENST00000511284	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM6	HGNC	ENSG00000121236	116	0	0	107	15	12.3	-	-	-	C	5618077	G	C	5618077	1	2	727	0	1	0	0	0	0	0	0	0	16629	1305	45	2		2	TRIM6	11	5618077	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	714461	5618077	129388439	528	64234										
OR56A4	0	genome.wustl.edu	37	chr11	6024305	6024305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacataaaaagtacattctaGacgtagtagagtgtgggttt	10	4	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	6024305	6024305	G	C	SNP	OR56A4	ENST00000330728	human	ensembl	69_37n	-1	known	missense	c.74	p.S25C	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389	67	0	0	66	27	29.03	-	-	-	C	6024305	G	C	6024305	3	2	727	1	0	0	0	0	1	0	0	0	11208	942	33	2	1025	2	OR56A4	11	6024305	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	406228	6024305	128982211	529	64235										
RIC3	0	genome.wustl.edu	37	chr11	8148248	8148248	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcctcctcagcttctttctCtggagaaaatctgtcaatga	8	11	5	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	8148248	8148248	C	G	SNP	RIC3	ENST00000309737	human	ensembl	69_37n	-1	known	missense	c.628	p.E210Q	1.000	NULL	NULL	-	no_errors	RIC3	HGNC	ENSG00000166405	100	0	0	114	14	10.94	-	-	-	G	8148248	C	G	8148248	3	3	727	1	0	0	0	0	1	0	0	0	13438	922	32	2	489	2	RIC3	11	8148248	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2123943	8148248	126858268	530	64236										
SPTY2D1	0	genome.wustl.edu	37	chr11	18633094	18633094	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaggcataatcactttcatCtttgtatctgataaaaggaa	6	6	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	18633094	18633094	C	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	missense	c.1894	p.D632N	1.000	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	156	0	0	146	17	10.43	-	-	-	T	18633094	C	T	18633094	3	4	727	1	0	0	0	0	1	0	0	0	15217	913	32	2	171	2	SPTY2D1	11	18633094	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10484846	18633094	116373422	531	64237										
NAV2	0	genome.wustl.edu	37	chr11	20104613	20104613	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccccaaaatctgcgtcctctCattcagatattgaggagatg	8	11	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	20104613	20104613	C	T	SNP	NAV2	ENST00000396087	human	ensembl	69_37n	1	known	missense	c.5563	p.H1855Y	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	74	0	0	61	27	30.34	-	-	-	T	20104613	C	T	20104613	3	4	727	1	0	0	0	0	1	0	0	0	10256	826	29	2	5606	2	NAV2	11	20104613	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1471519	20104613	114901903	532	64238										
KIF18A	0	genome.wustl.edu	37	chr11	28116237	28116237	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tattttctcttctttaatctCatccatgcatttgtaaaggt	4	8	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	28116237	28116237	C	T	SNP	KIF18A	ENST00000263181	human	ensembl	69_37n	-1	known	missense	c.436	p.E146K	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621	75	0	0	79	10	11.11	-	-	-	T	28116237	C	T	28116237	3	4	727	1	0	0	0	0	1	0	0	0	8332	835	29	2	2320	2	KIF18A	11	28116237	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	8011624	28116237	106890279	533	64239										
KCNA4	0	genome.wustl.edu	37	chr11	30033212	30033212	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccagcactcagtgccatgacGagatccctgtcgtccctaaa	8	15	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	30033212	30033212	G	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	0.060	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	26	0	0	22	6	20.69	-	-	-	T	30033212	G	T	30033212	2	4	727	1	0	0	0	0	0	0	0	1	8059	1045	37	3		3	KCNA4	11	30033212	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1916975	30033212	104973304	534	64240										
CKAP5	0	genome.wustl.edu	37	chr11	46810261	46810261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttctttccatccaggtttCttggctagcatcctcactaa	6	12	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	46810261	46810261	C	G	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.1938	p.K646N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	119	0	0	102	38	27.14	-	-	-	G	46810261	C	G	46810261	3	3	727	1	0	0	0	0	1	0	0	0	3475	912	32	2	4276	2	CKAP5	11	46810261	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	16777049	46810261	88196255	535	64241										
LRP4	0	genome.wustl.edu	37	chr11	46920202	46920202	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccactgtcacacatgaactCcccagagcggcagggctggt	12	14	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	46920202	46920202	C	A	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	nonsense	c.703	p.E235*	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	42	0	0	22	6	21.43	-	-	-	A	46920202	C	A	46920202	4	1	727	1	0	0	0	0	0	1	0	0	9025	864	30	2	5142	2	LRP4	11	46920202	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	109941	46920202	88086314	536	64242										
MYBPC3	0	genome.wustl.edu	37	chr11	47374181	47374181	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcctaaagctacctggcttCttccccggctcaggcatcct	8	16	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	47374181	47374181	C	T	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	silent	c.18	p.K6	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	76	0	0	29	14	32.56	-	-	-	T	47374181	C	T	47374181	2	4	727	1	0	0	0	0	0	0	0	1	10085	912	32	2		2	MYBPC3	11	47374181	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	453979	47374181	87632335	537	64243										
SMTNL1	0	genome.wustl.edu	37	chr11	57310448	57310448	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgtgggttctcaggagatGactggcaggaaagaagagac	15	6	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	57310448	57310448	G	A	SNP	SMTNL1	ENST00000457912	human	ensembl	69_37n	1	known	missense	c.387	p.M129I	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872	58	0	0	22	7	23.33	-	-	-	A	57310448	G	A	57310448	3	1	727	1	0	0	0	0	1	0	0	0	14904	1290	45	2	393	2	SMTNL1	11	57310448	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9936267	57310448	77696068	538	64244										
MS4A8B	0	genome.wustl.edu	37	chr11	60476149	60476149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcagtttgggcttgaacatCgtcagtgcaatctgctctgc	12	10	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	60476149	60476149	C	T	SNP	MS4A8B	ENST00000525458	human	ensembl	69_37n	1	putative	missense	c.374	p.S125L	0.977	pfam_CD20-like	pfam_CD20-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MS4A8B	HGNC	ENSG00000166959	76	0	0	36	21	36.84	-	-	-	T	60476149	C	T	60476149	3	4	727	1	0	0	0	0	1	0	0	0	9939	874	31	1	443	1	MS4A8B	11	60476149	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3165701	60476149	74530367	539	64245										
CPSF7	0	genome.wustl.edu	37	chr11	61183744	61183744	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatcgaggaggtgggggcatGagatgctggtagtggatacc	18	5	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	61183744	61183744	G	C	SNP	CPSF7	ENST00000340437	human	ensembl	69_37n	-1	known	silent	c.927	p.L309	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF7	HGNC	ENSG00000149532	44	0	0	24	4	14.29	-	-	-	C	61183744	G	C	61183744	2	2	727	1	0	0	0	0	0	0	0	1	3860	1277	45	2		2	CPSF7	11	61183744	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	707595	61183744	73822772	540	64246										
C11orf48	0	genome.wustl.edu	37	chr11	62437402	62437402	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccaatttttcctctgtcccaGagagggttgggcagcctggg	13	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	62437402	62437402	G	C	SNP	C11orf48	ENST00000431002	human	ensembl	69_37n	-1	known	silent	c.102	p.L34	0.000	NULL	NULL	-	no_errors	C11orf48	HGNC	ENSG00000162194	114	0	0	40	33	45.21	-	-	-	C	62437402	G	C	62437402	2	2	727	1	0	0	0	0	0	0	0	1	1655	929	33	2		2	C11orf48	11	62437402	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1253658	62437402	72569114	541	64247										
SNX15	0	genome.wustl.edu	37	chr11	64802327	64802327	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggggccgtaggccggtttGaagcctcagtgatcgaggag	18	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	64802327	64802327	G	A	SNP	SNX15	ENST00000377244	human	ensembl	69_37n	1	known	missense	c.265	p.E89K	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_MIT,pfam_Phox,superfamily_Phox,smart_Phox,smart_MIT,pfscan_Phox	-	no_errors	SNX15	HGNC	ENSG00000110025	29	0	0	5	8	61.54	-	-	-	A	64802327	G	A	64802327	3	1	727	1	0	0	0	0	1	0	0	0	14975	1291	45	2	279	2	SNX15	11	64802327	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2364925	64802327	70204189	542	64248										
RBM14	0	genome.wustl.edu	37	chr11	66392567	66392567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcatataatgcccagccctCggcctcttacaatgcccagt	6	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	66392567	66392567	C	T	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.1220	p.S407L	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	21	0	0	11	5	29.41	-	-	-	T	66392567	C	T	66392567	3	4	727	1	0	0	0	0	1	0	0	0	13198	893	31	1	1226	1	RBM14	11	66392567	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1590240	66392567	68613949	543	64249										
LRFN4	0	genome.wustl.edu	37	chr11	66627650	66627650	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggcagcgccgagcggctggAagagagtgtggtgtgatgga	20	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	66627650	66627650	A	G	SNP	LRFN4	ENST00000309602	human	ensembl	69_37n	1	known	missense	c.1892	p.E631G	0.822	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN4	HGNC	ENSG00000173621	42	0	0	13	5	27.78	-	-	-	G	66627650	A	G	66627650	3	3	727	1	0	0	0	0	1	0	0	0	9006	246	9	5	1898	5	LRFN4	11	66627650	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	235083	66627650	68378866	544	64250										
KDM2A	0	genome.wustl.edu	37	chr11	67013375	67013375	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagaattataggacccaaatCtcccatcttcagtttaaggg	8	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	67013375	67013375	C	T	SNP	KDM2A	ENST00000534486	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	24	0	0	20	8	28.57	-	-	-	T	67013375	C	T	67013375	1	4	727	0	1	0	0	0	0	0	0	0	8178	928	32	2		2	KDM2A	11	67013375	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	385725	67013375	67993141	545	64251										
SHANK2	0	genome.wustl.edu	37	chr11	70331427	70331427	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgcggacttaccttggagcGaggctggcggacttggctcc	15	13	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	70331427	70331427	G	C	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	silent	c.4974	p.L1658	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	39	0	0	38	5	11.63	-	-	-	C	70331427	G	C	70331427	2	2	727	1	0	0	0	0	0	0	0	1	14354	1045	37	3		3	SHANK2	11	70331427	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3318052	70331427	64675089	546	64252										
SHANK2	0	genome.wustl.edu	37	chr11	70507864	70507864	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctcctccgccggggacgttCatcatcatagccaattaatc	8	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	70507864	70507864	C	T	SNP	SHANK2	ENST00000449833	human	ensembl	69_37n	-1	known	missense	c.9	p.M3I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK2	HGNC	ENSG00000162105	61	0	0	35	10	22.22	-	-	-	T	70507864	C	T	70507864	3	4	727	1	0	0	0	0	1	0	0	0	14354	826	29	2	3820	2	SHANK2	11	70507864	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	176437	70507864	64498652	547	64253										
NADSYN1	0	genome.wustl.edu	37	chr11	71208553	71208553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atatggggatgacatatgcgGagctctcggtctatgggaaa	14	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	71208553	71208553	G	A	SNP	NADSYN1	ENST00000319023	human	ensembl	69_37n	1	known	missense	c.1789	p.E597K	0.997	pfam_NAD/GMP_synthase,pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890	103	0	0	36	24	40	-	-	-	A	71208553	G	A	71208553	3	1	727	1	0	0	0	0	1	0	0	0	10210	1175	41	2	1863	2	NADSYN1	11	71208553	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	700689	71208553	63797963	548	64254										
ARAP1	0	genome.wustl.edu	37	chr11	72399551	72399551	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccaggtagactttgagactcTtaataggccactccttctca	7	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	72399551	72399551	T	G	SNP	ARAP1	ENST00000393609	human	ensembl	69_37n	-1	known	missense	c.4019	p.K1340T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	52	0	0	28	4	12.5	-	-	-	G	72399551	T	G	72399551	3	3	727	1	0	0	0	0	1	0	0	0	840	1609	56	5	353	5	ARAP1	11	72399551	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	1190998	72399551	62606965	549	64255										
PAK1	0	genome.wustl.edu	37	chr11	77054952	77054952	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctttcttgggctgctgctGaagattcatctgcttaatgg	10	9	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	77054952	77054952	G	A	SNP	PAK1	ENST00000278568	human	ensembl	69_37n	-1	known	nonsense	c.910	p.Q304*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK1	HGNC	ENSG00000149269	129	0	0	178	28	13.53	-	-	-	A	77054952	G	A	77054952	4	1	727	1	0	0	0	0	0	1	0	0	11472	1299	45	2	804	2	PAK1	11	77054952	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4655401	77054952	57951564	550	64256										
KCTD21	0	genome.wustl.edu	37	chr11	77885525	77885525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catggcgcctagcatggagtCagggaagctggtcagggtcg	17	9	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	77885525	77885525	C	T	SNP	KCTD21	ENST00000340067	human	ensembl	69_37n	-1	known	missense	c.76	p.D26N	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997	42	0	0	47	9	16.07	-	-	-	T	77885525	C	T	77885525	3	4	727	1	0	0	0	0	1	0	0	0	8163	826	29	2	710	2	KCTD21	11	77885525	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	830573	77885525	57120991	551	64257										
SYTL2	0	genome.wustl.edu	37	chr11	85436737	85436737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caagggagagggtgaagttcCagttgcttccttcaggagtt	14	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	85436737	85436737	C	T	SNP	SYTL2	ENST00000359152	human	ensembl	69_37n	-1	known	missense	c.2335	p.G779R	0.011	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYTL2	HGNC	ENSG00000137501	64	0	0	47	8	14.55	-	-	-	T	85436737	C	T	85436737	3	4	727	1	0	0	0	0	1	0	0	0	15575	603	21	4	3107	4	SYTL2	11	85436737	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7551212	85436737	49569779	552	64258										
GRM5	0	genome.wustl.edu	37	chr11	88338035	88338035	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagcctgggcagagggacatCtgcatgttgtggagcccata	14	9	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	88338035	88338035	C	G	SNP	GRM5	ENST00000305447	human	ensembl	69_37n	-1	known	missense	c.1245	p.Q415H	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1	-	no_errors	GRM5	HGNC	ENSG00000168959	55	0	0	33	17	33.33	-	-	-	G	88338035	C	G	88338035	3	3	727	1	0	0	0	0	1	0	0	0	6851	912	32	2	2417	2	GRM5	11	88338035	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2901298	88338035	46668481	553	64259										
FOLH1B	0	genome.wustl.edu	37	chr11	89391855	89391855	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggaacgggacatgaaaatCaattgctctgggaaaattgt	11	5	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	89391855	89391855	C	T	SNP	FOLH1B	ENST00000526379	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612	74	0	0	41	20	32.79	-	-	-	T	89391855	C	T	89391855	1	4	727	0	1	0	0	0	0	0	0	0	6026	841	29	2		2	FOLH1B	11	89391855	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1053820	89391855	45614661	554	64260										
CRYAB	0	genome.wustl.edu	37	chr11	111781132	111781132	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctctggggagaagtgcttCacatccaggttgacagagaa	12	9	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	111781132	111781132	C	A	SNP	CRYAB	ENST00000227251	human	ensembl	69_37n	-1	known	silent	c.243	p.V81	1.000	pfam_Hsp20,superfamily_HSP20-like_chaperone,prints_Alpha-crystallin/HSP,pfscan_Hsp20	pfam_Alpha-crystallin_N,pfam_Hsp20,superfamily_HSP20-like_chaperone,prints_Alpha-crystallin/HSP,pfscan_Hsp20	-	no_errors	CRYAB	HGNC	ENSG00000109846	68	0	0	32	10	23.81	-	-	-	A	111781132	C	A	111781132	2	1	727	1	0	0	0	0	0	0	0	1	3936	813	29	2		2	CRYAB	11	111781132	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	22389277	111781132	23225384	555	64261										
CADM1	0	genome.wustl.edu	37	chr11	115109292	115109292	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcaaaagtatcttccttcatCagaaattgagacgtttgtca	7	8	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	115109292	115109292	C	G	SNP	CADM1	ENST00000452722	human	ensembl	69_37n	-1	known	missense	c.352	p.D118H	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM1	HGNC	ENSG00000182985	67	0	0	71	9	11.25	-	-	-	G	115109292	C	G	115109292	3	3	727	1	0	0	0	0	1	0	0	0	2591	826	29	2	1008	2	CADM1	11	115109292	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3328160	115109292	19897224	556	64262										
MLL	0	genome.wustl.edu	37	chr11	118376471	118376471	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccgaactgtccccaacatCataaaaagatctaaatctag	4	12	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	118376471	118376471	C	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	silent	c.9855	p.I3285	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	79	0	0	46	16	25.81	-	-	-	T	118376471	C	T	118376471	2	4	727	1	0	0	0	0	0	0	0	1	9691	816	29	2		2	MLL	11	118376471	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3267179	118376471	16630045	557	64263										
CCDC84	0	genome.wustl.edu	37	chr11	118868978	118868978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcgcgggcacgtttacagccGcaagcaccagcggcagctga	13	14	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	118868978	118868978	G	T	SNP	CCDC84	ENST00000334418	human	ensembl	69_37n	1	known	missense	c.71	p.R24L	1.000	NULL	NULL	-	no_errors	CCDC84	HGNC	ENSG00000186166	22	0	0	9	4	30.77	-	-	-	T	118868978	G	T	118868978	3	4	727	1	0	0	0	0	1	0	0	0	2885	1087	38	3	73	3	CCDC84	11	118868978	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	492507	118868978	16137538	558	64264										
TBCEL	0	genome.wustl.edu	37	chr11	120916442	120916442	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttcatgcaagtattatgtGaaaaatatagtcctgaaaat	7	4	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	120916442	120916442	G	C	SNP	TBCEL	ENST00000422003	human	ensembl	69_37n	1	known	missense	c.43	p.E15Q	1.000	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114	56	0	0	22	8	25.81	-	-	-	C	120916442	G	C	120916442	3	2	727	1	0	0	0	0	1	0	0	0	15730	1291	45	2	45	2	TBCEL	11	120916442	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2047464	120916442	14090074	559	64265										
C11orf63	0	genome.wustl.edu	37	chr11	122756560	122756560	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttttgcatttttcaagatGagtaaacgtaaactaattcc	5	6	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	11	122756560	122756560	G	C	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	36	0	0	13	10	41.67	-	-	-	C	122756560	G	C	122756560	3	2	727	1	0	0	0	0	1	0	0	0	1665	1290	45	2	5	2	C11orf63	11	122756560	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1840118	122756560	12249956	560	64266										
ADIPOR2	0	genome.wustl.edu	37	chr12	1890221	1890221	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggacatgtttgccacccctCagtatcggggagtaagagca	13	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	1890221	1890221	C	A	SNP	ADIPOR2	ENST00000357103	human	ensembl	69_37n	1	known	missense	c.817	p.Q273K	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	ADIPOR2	HGNC	ENSG00000006831	113	0	0	98	34	25.76	-	-	-	A	1890221	C	A	1890221	3	1	727	1	0	0	0	0	1	0	0	0	319	827	29	2	835	2	ADIPOR2	12	1890221	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		1890221	131961674	561	64267										
AKAP3	0	genome.wustl.edu	37	chr12	4736759	4736759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcctcctctgatttgggttCagaatacattttttctctca	5	11	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	4736759	4736759	C	T	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	missense	c.1309	p.E437K	0.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	82	0	0	66	27	29.03	-	-	-	T	4736759	C	T	4736759	3	4	727	1	0	0	0	0	1	0	0	0	452	835	29	2	1260	2	AKAP3	12	4736759	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2846538	4736759	129115136	562	64268										
C1RL	0	genome.wustl.edu	37	chr12	7249361	7249361	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccgctgcggtagagggtctCattatcgggcagacagaccg	15	11	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	7249361	7249361	C	T	SNP	C1RL	ENST00000266542	human	ensembl	69_37n	-1	known	missense	c.1090	p.E364K	0.028	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178	34	0	0	19	12	38.71	-	-	-	T	7249361	C	T	7249361	3	4	727	1	0	0	0	0	1	0	0	0	1992	835	29	2	377	2	C1RL	12	7249361	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2512602	7249361	126602534	563	64269										
CLEC4D	0	genome.wustl.edu	37	chr12	8670867	8670867	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatcagaactgaaaagtgctGaaggtacagagtgtaagata	11	4	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	8670867	8670867	G	A	SNP	CLEC4D	ENST00000299665	human	ensembl	69_37n	1	known	missense	c.229	p.E77K	0.088	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527	35	0	0	32	15	31.91	-	-	-	A	8670867	G	A	8670867	3	1	727	1	0	0	0	0	1	0	0	0	3544	1291	45	2	239	2	CLEC4D	12	8670867	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1421506	8670867	125181028	564	64270										
LRP6	0	genome.wustl.edu	37	chr12	12315287	12315287	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtctactgccatgccttctgGataatctaagccgaattcta	7	11	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	12315287	12315287	G	C	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.2119	p.P707A	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	57	0	0	54	9	14.29	-	-	-	C	12315287	G	C	12315287	3	2	727	1	0	0	0	0	1	0	0	0	9028	1174	41	2	2778	2	LRP6	12	12315287	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3644420	12315287	121536608	565	64271										
KIAA1467	0	genome.wustl.edu	37	chr12	13221368	13221368	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttactgggcattgagacttCaaggcctgcgcaggtttgca	12	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	13221368	13221368	C	G	SNP	KIAA1467	ENST00000197268	human	ensembl	69_37n	1	known	missense	c.1273	p.Q425E	0.017	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	KIAA1467	HGNC	ENSG00000084444	62	0	0	44	7	13.73	-	-	-	G	13221368	C	G	13221368	3	3	727	1	0	0	0	0	1	0	0	0	8287	827	29	2	1303	2	KIAA1467	12	13221368	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	906081	13221368	120630527	566	64272										
SLCO1C1	0	genome.wustl.edu	37	chr12	20852638	20852638	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accatgctgtggtgaactaaAggtagagcaaccaagaagta	11	7	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	20852638	20852638	A	C	SNP	SLCO1C1	ENST00000381552	human	ensembl	69_37n	1	known	missense	c.128	p.K43T	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	38	0	0	26	10	27.78	-	-	-	C	20852638	A	C	20852638	3	2	727	1	0	0	0	0	1	0	0	0	14814	86	3	5	130	5	SLCO1C1	12	20852638	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09	7631270	20852638	112999257	567	64273										
SOX5	0	genome.wustl.edu	37	chr12	23728724	23728724	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatgtgggtgatttgccatCagaggtcttgggtttagctg	15	5	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	23728724	23728724	C	T	SNP	SOX5	ENST00000451604	human	ensembl	69_37n	-1	known	missense	c.1213	p.D405N	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX5	HGNC	ENSG00000134532	142	0	0	120	38	24.05	-	-	-	T	23728724	C	T	23728724	3	4	727	1	0	0	0	0	1	0	0	0	15043	826	29	2	1102	2	SOX5	12	23728724	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2876086	23728724	110123171	568	64274										
ITPR2	0	genome.wustl.edu	37	chr12	26647139	26647139	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatgccgaggaaaatgccttCtgaaaaaattctgtcatttt	7	7	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	26647139	26647139	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.5317	p.E1773K	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	52	0	0	53	20	27.4	-	-	-	T	26647139	C	T	26647139	3	4	727	1	0	0	0	0	1	0	0	0	7975	922	32	2	2864	2	ITPR2	12	26647139	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2918415	26647139	107204756	569	64275										
TM7SF3	0	genome.wustl.edu	37	chr12	27126946	27126946	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctggctgctccttctggaaGagccctttaatctgggttaa	11	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	27126946	27126946	G	A	SNP	TM7SF3	ENST00000343028	human	ensembl	69_37n	-1	known	silent	c.1665	p.L555	0.999	NULL	NULL	-	no_errors	TM7SF3	HGNC	ENSG00000064115	64	0	0	54	11	16.67	-	-	-	A	27126946	G	A	27126946	2	1	727	1	0	0	0	0	0	0	0	1	16070	929	33	2		2	TM7SF3	12	27126946	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	479807	27126946	106724949	570	64276										
TWF1	0	genome.wustl.edu	37	chr12	44191603	44191603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctactccttgtagtgtttGatgcttagtgtccacaccca	8	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	44191603	44191603	G	C	SNP	TWF1	ENST00000325127	human	ensembl	69_37n	-1	known	missense	c.619	p.Q207E	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF1	HGNC	ENSG00000151239	69	0	0	53	16	23.19	-	-	-	C	44191603	G	C	44191603	3	2	727	1	0	0	0	0	1	0	0	0	16878	1299	45	2	551	2	TWF1	12	44191603	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	17064657	44191603	89660292	571	64277										
ANO6	0	genome.wustl.edu	37	chr12	45803172	45803172	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctaattgggcgatttcacaGagtttctggatcagaaaaga	10	6	4	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	45803172	45803172	G	C	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.1913	p.R638T	0.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	62	0	0	67	9	11.84	-	-	-	C	45803172	G	C	45803172	3	2	727	1	0	0	0	0	1	0	0	0	700	942	33	2	1995	2	ANO6	12	45803172	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1611569	45803172	88048723	572	64278										
ARID2	0	genome.wustl.edu	37	chr12	46240701	46240701	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaatagtggaaatagatagtGagaagtttgcttgtcagtgg	14	2	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	46240701	46240701	G	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	missense	c.1561	p.E521K	1.000	pfam_DNA-bd_RFX	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	145	0	0	108	38	26.03	-	-	-	A	46240701	G	A	46240701	3	1	727	1	0	0	0	0	1	0	0	0	917	1291	45	2	1607	2	ARID2	12	46240701	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	437529	46240701	87611194	573	64279										
CELA1	0	genome.wustl.edu	37	chr12	51737591	51737591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgtctgataagggtccctCcacaggtgtgataccgggaa	12	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	51737591	51737591	C	G	SNP	CELA1	ENST00000293636	human	ensembl	69_37n	-1	known	missense	c.146	p.G49A	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA1	HGNC	ENSG00000139610	68	0	0	38	11	22	-	-	-	G	51737591	C	G	51737591	3	3	727	1	0	0	0	0	1	0	0	0	3239	855	30	2	654	2	CELA1	12	51737591	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5496890	51737591	82114304	574	64280										
KRT76	0	genome.wustl.edu	37	chr12	53165956	53165956	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggcgcggacctcggcaatGatgctgcccaggtccaggca	15	13	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	53165956	53165956	G	A	SNP	KRT76	ENST00000332411	human	ensembl	69_37n	-1	known	silent	c.1059	p.I353	1.000	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	79	0	0	58	7	10.45	-	-	-	A	53165956	G	A	53165956	2	1	727	1	0	0	0	0	0	0	0	1	8542	1280	45	2		2	KRT76	12	53165956	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1428365	53165956	80685939	575	64281										
TARBP2	0	genome.wustl.edu	37	chr12	53895905	53895905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtacgaccttctcaaagccGagggccaagcccaccagcct	9	16	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	53895905	53895905	G	A	SNP	TARBP2	ENST00000266987	human	ensembl	69_37n	1	known	missense	c.160	p.E54K	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	TARBP2	HGNC	ENSG00000139546	47	0	0	30	15	32.61	-	-	-	A	53895905	G	A	53895905	3	1	727	1	0	0	0	0	1	0	0	0	15648	1059	37	1	166	1	TARBP2	12	53895905	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	729949	53895905	79955990	576	64282										
OR9K2	0	genome.wustl.edu	37	chr12	55524223	55524223	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctttatccatagaatgatatCtttttccttatcatgtatta	3	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	55524223	55524223	C	G	SNP	OR9K2	ENST00000305377	human	ensembl	69_37n	1	known	missense	c.671	p.S224C	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9K2	HGNC	ENSG00000170605	93	0	0	57	26	30.95	-	-	-	G	55524223	C	G	55524223	3	3	727	1	0	0	0	0	1	0	0	0	11327	913	32	2	673	2	OR9K2	12	55524223	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1628318	55524223	78327672	577	64283										
PRIM1	0	genome.wustl.edu	37	chr12	57144894	57144894	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atctccttttccagatcactCtggttgttgaaggattggta	9	8	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	57144894	57144894	C	G	SNP	PRIM1	ENST00000338193	human	ensembl	69_37n	-1	known	missense	c.189	p.Q63H	0.777	tigrfam_DNA_primase_ssu_euk/arc	pfam_DNA_primase_S,tigrfam_DNA_primase_ssu_euk/arc	-	no_errors	PRIM1	HGNC	ENSG00000198056	182	0	0	149	18	10.71	-	-	-	G	57144894	C	G	57144894	3	3	727	1	0	0	0	0	1	0	0	0	12571	912	32	2	1121	2	PRIM1	12	57144894	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1620671	57144894	76707001	578	64284										
NDUFA4L2	0	genome.wustl.edu	37	chr12	57629349	57629349	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggcagcccagcctggcttaGaagtctggccggtccttctt	12	13	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	57629349	57629349	G	C	SNP	NDUFA4L2	ENST00000393825	human	ensembl	69_37n	-1	known	missense	c.261	p.F87L	1.000	NULL	NULL	-	no_errors	NDUFA4L2	HGNC	ENSG00000185633	44	0	0	29	10	25.64	-	-	-	C	57629349	G	C	57629349	3	2	727	1	0	0	0	0	1	0	0	0	10339	933	33	2	6	2	NDUFA4L2	12	57629349	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	484455	57629349	76222546	579	64285										
MBD6	0	genome.wustl.edu	37	chr12	57919283	57919283	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttcccaggcctttcccactCtagcaggccctggggggctt	11	15	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	57919283	57919283	C	G	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	missense	c.532	p.L178V	0.630	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987	17	0	0	23	6	20.69	-	-	-	G	57919283	C	G	57919283	3	3	727	1	0	0	0	0	1	0	0	0	9419	912	32	2	546	2	MBD6	12	57919283	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	289934	57919283	75932612	580	64286										
AVIL	0	genome.wustl.edu	37	chr12	58203467	58203467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggttccactttggtccagGatgtagcagtcctaaagcag	11	9	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	58203467	58203467	G	C	SNP	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	missense	c.852	p.I284M	0.995	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	155	0	0	125	21	14.29	-	-	-	C	58203467	G	C	58203467	3	2	727	1	0	0	0	0	1	0	0	0	1231	1164	41	2	1655	2	AVIL	12	58203467	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	284184	58203467	75648428	581	64287										
USP15	0	genome.wustl.edu	37	chr12	62790158	62790158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctgtttccaaccactatgGagggatgggaggaggacact	14	8	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	62790158	62790158	G	T	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.2654	p.G885V	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	124	0	0	110	14	11.2	-	-	-	T	62790158	G	T	62790158	3	4	727	1	0	0	0	0	1	0	0	0	17143	1174	41	2	2641	2	USP15	12	62790158	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4586691	62790158	71061737	582	64288										
MON2	0	genome.wustl.edu	37	chr12	62986519	62986519	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcatccagagttcaaaatgGagaatcttgaccggctacaa	9	9	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	62986519	62986519	G	C	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	missense	c.5147	p.G1716A	1.000	NULL	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	54	0	0	46	13	22.03	-	-	-	C	62986519	G	C	62986519	3	2	727	1	0	0	0	0	1	0	0	0	9772	1174	41	2	5282	2	MON2	12	62986519	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	196361	62986519	70865376	583	64289										
SRGAP1	0	genome.wustl.edu	37	chr12	64505738	64505738	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctggatggccctgtttatGagaaatgtatggctggagat	14	5	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	64505738	64505738	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	1	known	missense	c.2116	p.E706K	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	104	0	0	72	15	17.24	-	-	-	A	64505738	G	A	64505738	3	1	727	1	0	0	0	0	1	0	0	0	15236	1291	45	2	2182	2	SRGAP1	12	64505738	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1519219	64505738	69346157	584	64290										
CAND1	0	genome.wustl.edu	37	chr12	67691236	67691236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttcaattctgacctgtctaCttccccagttgaccagccct	5	16	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	67691236	67691236	C	T	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	missense	c.541	p.L181F	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	75	0	0	72	20	21.74	-	-	-	T	67691236	C	T	67691236	3	4	727	1	0	0	0	0	1	0	0	0	2640	565	20	4	559	4	CAND1	12	67691236	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3185498	67691236	66160659	585	64291										
PTPRB	0	genome.wustl.edu	37	chr12	70953346	70953346	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgggggccctttccacgtGatggccaaggatgtgtttgc	14	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	70953346	70953346	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.4491	p.I1497	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	114	0	0	71	15	17.24	-	-	-	A	70953346	G	A	70953346	2	1	727	1	0	0	0	0	0	0	0	1	12879	1280	45	2		2	PTPRB	12	70953346	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3262110	70953346	62898549	586	64292										
SYT1	0	genome.wustl.edu	37	chr12	79689854	79689854	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtcatttatttcagctgctGgtagggatcattcaggctgc	11	8	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	79689854	79689854	G	C	SNP	SYT1	ENST00000549559	human	ensembl	69_37n	1	novel	missense	c.185	p.W62S	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT1	HGNC	ENSG00000067715	61	0	0	35	13	27.08	-	-	-	C	79689854	G	C	79689854	3	2	727	1	0	0	0	0	1	0	0	0	15557	1335	47	4	494	4	SYT1	12	79689854	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8736508	79689854	54162041	587	64293										
LIN7A	0	genome.wustl.edu	37	chr12	81205439	81205439	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgagtagttccacagctttCtcatggtgttctccttccac	7	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	81205439	81205439	C	G	SNP	LIN7A	ENST00000552864	human	ensembl	69_37n	-1	known	missense	c.507	p.E169D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Lin-7_homologue,pfscan_PDZ	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7A	HGNC	ENSG00000111052	69	0	0	54	15	21.74	-	-	-	G	81205439	C	G	81205439	3	3	727	1	0	0	0	0	1	0	0	0	8866	912	32	2	198	2	LIN7A	12	81205439	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1515585	81205439	52646456	588	64294										
LRRIQ1	0	genome.wustl.edu	37	chr12	85626496	85626496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcactttttgcctgagttaGatccagatgtacttaatggt	8	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	85626496	85626496	G	C	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	1	known	missense	c.4978	p.D1660H	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	152	0	0	114	38	24.84	-	-	-	C	85626496	G	C	85626496	3	2	727	1	0	0	0	0	1	0	0	0	9095	942	33	2	5080	2	LRRIQ1	12	85626496	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4421057	85626496	48225399	589	64295										
ATP2B1	0	genome.wustl.edu	37	chr12	90036112	90036112	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcttctcttctttctaaatCtgcagggtttccacttaaac	5	11	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	90036112	90036112	C	G	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.229	p.D77H	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	72	0	0	74	13	14.94	-	-	-	G	90036112	C	G	90036112	3	3	727	1	0	0	0	0	1	0	0	0	1143	913	32	2	3667	2	ATP2B1	12	90036112	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4409616	90036112	43815783	590	64296										
EEA1	0	genome.wustl.edu	37	chr12	93210085	93210085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgtgcagctctaagatgtGccttctgctcttgtacctgg	10	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	93210085	93210085	G	A	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.1820	p.A607V	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	146	0	0	100	36	26.47	-	-	-	A	93210085	G	A	93210085	3	1	727	1	0	0	0	0	1	0	0	0	4956	1319	46	4	2475	4	EEA1	12	93210085	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3173973	93210085	40641810	591	64297										
VEZT	0	genome.wustl.edu	37	chr12	95689989	95689989	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctgggatttaaagcttcaGaggcagaaaggcagaagtgg	15	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	95689989	95689989	G	C	SNP	VEZT	ENST00000436874	human	ensembl	69_37n	1	known	missense	c.1786	p.E596Q	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203	41	0	0	42	20	31.25	-	-	-	C	95689989	G	C	95689989	3	2	727	1	0	0	0	0	1	0	0	0	17253	943	33	2	1828	2	VEZT	12	95689989	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2479904	95689989	38161906	592	64298										
CDK17	0	genome.wustl.edu	37	chr12	96691099	96691099	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtcatccatgtactgtttCaggtctttatcctggaaaaa	7	9	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	96691099	96691099	C	T	SNP	CDK17	ENST00000261211	human	ensembl	69_37n	-1	known	silent	c.822	p.L274	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK17	HGNC	ENSG00000059758	98	0	0	69	30	30.3	-	-	-	T	96691099	C	T	96691099	2	4	727	1	0	0	0	0	0	0	0	1	3162	813	29	2		2	CDK17	12	96691099	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1001110	96691099	37160796	593	64299										
ANKS1B	0	genome.wustl.edu	37	chr12	99166817	99166817	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttgaaagggggtgggtactCaccacatcaaaggcagtaaa	13	7	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	99166817	99166817	C	T	SNP	ANKS1B	ENST00000549315	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ANKS1B	HGNC	ENSG00000185046	61	0	0	53	9	14.29	-	-	-	T	99166817	C	T	99166817	1	4	727	0	1	0	0	0	0	0	0	0	688	841	29	2		2	ANKS1B	12	99166817	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2475718	99166817	34685078	594	64300										
ANKS1B	0	genome.wustl.edu	37	chr12	99837459	99837459	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgggcacttacctggggtcGaatgacttttacaatatttt	9	8	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	99837459	99837459	G	A	SNP	ANKS1B	ENST00000329257	human	ensembl	69_37n	-1	known	nonsense	c.1567	p.R523*	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTyr_interaction_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTyr_interaction_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTyr_interaction_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	132	0	0	97	43	30.71	-	-	-	A	99837459	G	A	99837459	4	1	727	1	0	0	0	0	0	1	0	0	688	1066	37	1	2531	1	ANKS1B	12	99837459	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	670642	99837459	34014436	595	64301										
ANO4	0	genome.wustl.edu	37	chr12	101491639	101491639	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgcagtgccaccctagtgGatgccttattgatctgtgta	10	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	101491639	101491639	G	C	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.1922	p.G641A	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	98	0	0	83	21	20	-	-	-	C	101491639	G	C	101491639	3	2	727	1	0	0	0	0	1	0	0	0	698	1174	41	2	1891	2	ANO4	12	101491639	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1654180	101491639	32360256	596	64302										
MYBPC1	0	genome.wustl.edu	37	chr12	102056149	102056149	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctgcaggatattttattgaGaggaagaagaaacaaagctc	10	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	102056149	102056149	G	C	SNP	MYBPC1	ENST00000361466	human	ensembl	69_37n	1	known	missense	c.2046	p.E682D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC1	HGNC	ENSG00000196091	29	0	0	29	9	23.68	-	-	-	C	102056149	G	C	102056149	3	2	727	1	0	0	0	0	1	0	0	0	10083	933	33	2	2128	2	MYBPC1	12	102056149	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	564510	102056149	31795746	597	64303										
STAB2	0	genome.wustl.edu	37	chr12	104134419	104134419	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcccttagggtgtgaagcaGaagtgtctctacaacctgcc	10	11	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	104134419	104134419	G	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	missense	c.5766	p.Q1922H	0.996	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	34	0	0	12	7	36.84	-	-	-	C	104134419	G	C	104134419	3	2	727	1	0	0	0	0	1	0	0	0	15329	933	33	2	5984	2	STAB2	12	104134419	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2078270	104134419	29717476	598	64304										
SART3	0	genome.wustl.edu	37	chr12	108954579	108954579	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatggggacccgaggacctGaaagactggaagatgcccgc	14	11	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	108954579	108954579	G	A	SNP	SART3	ENST00000546611	human	ensembl	69_37n	-1	known	nonsense	c.352	p.Q118*	0.016	NULL	NULL	-	no_errors	SART3	HGNC	ENSG00000075856	49	0	0	18	11	37.93	-	-	-	A	108954579	G	A	108954579	4	1	727	1	0	0	0	0	0	1	0	0	13934	1305	45	2		2	SART3	12	108954579	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4820160	108954579	24897316	599	64305										
SVOP	0	genome.wustl.edu	37	chr12	109316518	109316518	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccatgtaatcctcctcactCaggtactcgcaggccaggct	8	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	109316518	109316518	C	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	silent	c.908	p.*303	0.998	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	108	0	0	57	23	28.05	-	-	-	T	109316518	C	T	109316518	2	4	727	1	0	0	0	0	0	0	0	1	15514	813	29	2		2	SVOP	12	109316518	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	361939	109316518	24535377	600	64306										
SVOP	0	genome.wustl.edu	37	chr12	109366203	109366203	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttcctgccgtactggtctGagatatttccccagagcgtg	10	11	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	109366203	109366203	G	C	SNP	SVOP	ENST00000550436	human	ensembl	69_37n	-1	known	nonsense	c.50	p.S17*	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	97	0	0	62	18	22.22	-	-	-	C	109366203	G	C	109366203	4	2	727	1	0	0	0	0	0	1	0	0	15514	1294	45	2		2	SVOP	12	109366203	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	49685	109366203	24485692	601	64307										
ACACB	0	genome.wustl.edu	37	chr12	109700261	109700261	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatccagcttacaagaagctCatggaacagctaggtaaggg	12	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	109700261	109700261	C	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	silent	c.6774	p.L2258	0.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	42	0	0	34	8	19.05	-	-	-	T	109700261	C	T	109700261	2	4	727	1	0	0	0	0	0	0	0	1	107	813	29	2		2	ACACB	12	109700261	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	334058	109700261	24151634	602	64308										
GIT2	0	genome.wustl.edu	37	chr12	110376308	110376308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggggccacatggggttctGctgtgtctggtaccaagcca	14	10	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	110376308	110376308	G	A	SNP	GIT2	ENST00000355312	human	ensembl	69_37n	-1	known	missense	c.1880	p.A627V	0.225	NULL	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC	ENSG00000139436	122	0	0	70	25	26.32	-	-	-	A	110376308	G	A	110376308	3	1	727	1	0	0	0	0	1	0	0	0	6449	1319	46	4	411	4	GIT2	12	110376308	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	676047	110376308	23475587	603	64309										
CCDC63	0	genome.wustl.edu	37	chr12	111321923	111321923	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccggctgctgaagctggctGagagtgggaacctaaaccag	14	10	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	111321923	111321923	G	A	SNP	CCDC63	ENST00000308208	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	0.000	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093	89	0	0	70	19	21.35	-	-	-	A	111321923	G	A	111321923	3	1	727	1	0	0	0	0	1	0	0	0	2861	1291	45	2	969	2	CCDC63	12	111321923	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	945615	111321923	22529972	604	64310										
PLBD2	0	genome.wustl.edu	37	chr12	113818608	113818608	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcctcctaccccggcaccatCttctcctgcgacgacttcta	5	19	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	113818608	113818608	C	T	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	silent	c.918	p.I306	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	85	0	0	51	17	25	-	-	-	T	113818608	C	T	113818608	2	4	727	1	0	0	0	0	0	0	0	1	12100	903	32	2		2	PLBD2	12	113818608	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2496685	113818608	20033287	605	64311										
TBX5	0	genome.wustl.edu	37	chr12	114793599	114793599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccgagggaccaggggccccGaggtgaagtgagcggagaag	20	9	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	114793599	114793599	G	A	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.1295	p.S432L	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	20	0	0	21	7	25	-	-	-	A	114793599	G	A	114793599	3	1	727	1	0	0	0	0	1	0	0	0	15756	1059	37	1	265	1	TBX5	12	114793599	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	974991	114793599	19058296	606	64312										
TBX5	0	genome.wustl.edu	37	chr12	114793746	114793746	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caggctcgctggggggcgcaGagctggcatacatgcaagct	16	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	114793746	114793746	G	C	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.1148	p.S383C	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	48	0	0	19	13	40.62	-	-	-	C	114793746	G	C	114793746	3	2	727	1	0	0	0	0	1	0	0	0	15756	942	33	2	412	2	TBX5	12	114793746	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	147	114793746	19058149	607	64313										
TBX3	0	genome.wustl.edu	37	chr12	115120802	115120803	+	Frame_Shift_Ins	INS	-	-	A													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cggtctcggccgcccccaccINSaattgatccatgatcggctt							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	115120802	115120803	-	A	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.204_203	p.L68fs	1.000:1.000	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	16	0	0	9	3	25	-	-	-	A	115120803	-	A	115120802	7	5	727	1	0	1	1	0	0	0	0	0	15754	593	21	0	2059	0	TBX3	12	115120802	Frame_Shift_Ins	INS	-	TCGA-D8-A27G-01A-11D-A16D-09	327056	115120802	18731093	608	64314										
MED13L	0	genome.wustl.edu	37	chr12	116406835	116406835	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgggagaggaatggaggttCccagtcattaatatgccaat	12	6	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	116406835	116406835	C	T	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	silent	c.6135	p.G2045	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	70	0	0	50	12	19.05	-	-	-	T	116406835	C	T	116406835	2	4	727	1	0	0	0	0	0	0	0	1	9502	842	30	2		2	MED13L	12	116406835	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1286033	116406835	17445060	609	64315										
FBXO21	0	genome.wustl.edu	37	chr12	117595778	117595778	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacctcctcctttttgcgctCaatgtgctctagagtgtgct	8	13	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	117595778	117595778	C	G	SNP	FBXO21	ENST00000330622	human	ensembl	69_37n	-1	known	missense	c.1438	p.E480Q	1.000	superfamily_F-box_dom_cyclin-like	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom_cyclin-like,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	47	0	0	52	8	13.33	-	-	-	G	117595778	C	G	117595778	3	3	727	1	0	0	0	0	1	0	0	0	5779	835	29	2	460	2	FBXO21	12	117595778	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1188943	117595778	16256117	610	64316										
RPLP0	0	genome.wustl.edu	37	chr12	120638628	120638628	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccacgcagggtttaaagacGatgtcactgaggagagacag	14	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	120638628	120638628	G	C	SNP	RPLP0	ENST00000550296	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0	HGNC	ENSG00000089157	22	0	0	6	6	50	-	-	-	C	120638628	G	C	120638628	1	2	727	0	1	0	0	0	0	0	0	0	13690	1073	37	3		3	RPLP0	12	120638628	RNA	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3042850	120638628	13213267	611	64317										
SPPL3	0	genome.wustl.edu	37	chr12	121220515	121220515	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaggacgagcatgacagacaGagagaatgacagcaactcag	13	8	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	121220515	121220515	G	A	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	silent	c.445	p.L149	0.999	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	52	0	0	51	17	25	-	-	-	A	121220515	G	A	121220515	2	1	727	1	0	0	0	0	0	0	0	1	15181	933	33	2		2	SPPL3	12	121220515	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	581887	121220515	12631380	612	64318										
RNF34	0	genome.wustl.edu	37	chr12	121858105	121858105	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgacgacgatgatgaggatGatgatgatgaagaagaaaac	13	3	0	9			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	121858105	121858105	G	A	SNP	RNF34	ENST00000392465	human	ensembl	69_37n	1	known	missense	c.697	p.D233N	0.047	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF34	HGNC	ENSG00000170633	48	0	0	42	16	27.59	-	-	-	A	121858105	G	A	121858105	3	1	727	1	0	0	0	0	1	0	0	0	13575	1290	45	2	721	2	RNF34	12	121858105	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	637590	121858105	11993790	613	64319										
RHOF	0	genome.wustl.edu	37	chr12	122217526	122217526	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgaaacttggcggaacattCcaggtagagagcagctcgga	13	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	122217526	122217526	C	G	SNP	RHOF	ENST00000267205	human	ensembl	69_37n	-1	known	missense	c.514	p.E172Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOF	HGNC	ENSG00000139725	41	0	0	27	4	12.9	-	-	-	G	122217526	C	G	122217526	3	3	727	1	0	0	0	0	1	0	0	0	13422	864	30	2	125	2	RHOF	12	122217526	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	359421	122217526	11634369	614	64320										
KNTC1	0	genome.wustl.edu	37	chr12	123065155	123065155	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaatttaattacagacaatCtgcagaagaaggacgaatgt	8	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	123065155	123065155	C	G	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	missense	c.2920	p.L974V	0.772	superfamily_PAH	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	51	0	0	44	25	36.23	-	-	-	G	123065155	C	G	123065155	3	3	727	1	0	0	0	0	1	0	0	0	8481	912	32	2	3046	2	KNTC1	12	123065155	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	847629	123065155	10786740	615	64321										
TCTN2	0	genome.wustl.edu	37	chr12	124171390	124171390	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttgtcttccaggaatgctCatcaaatttaacaacgctgt	7	9	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	124171390	124171390	C	T	SNP	TCTN2	ENST00000303372	human	ensembl	69_37n	1	known	missense	c.572	p.S191L	0.575	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN2	HGNC	ENSG00000168778	36	0	0	36	5	12.2	-	-	-	T	124171390	C	T	124171390	3	4	727	1	0	0	0	0	1	0	0	0	15818	838	29	2	594	2	TCTN2	12	124171390	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1106235	124171390	9680505	616	64322										
PIWIL1	0	genome.wustl.edu	37	chr12	130834474	130834474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agagcacctttaagaaagccGacggctctgaagtcagcttc	10	11	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	130834474	130834474	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.1006	p.D336N	0.999	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	36	0	0	33	15	31.25	-	-	-	A	130834474	G	A	130834474	3	1	727	1	0	0	0	0	1	0	0	0	12031	1058	37	1	1036	1	PIWIL1	12	130834474	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6663084	130834474	3017421	617	64323										
CHFR	0	genome.wustl.edu	37	chr12	133446307	133446307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgttgatggctgtggttcctCaaagcacacctgagtggcgg	14	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	12	133446307	133446307	C	T	SNP	CHFR	ENST00000266880	human	ensembl	69_37n	-1	known	missense	c.517	p.E173K	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609	35	0	0	21	13	38.24	-	-	-	T	133446307	C	T	133446307	3	4	727	1	0	0	0	0	1	0	0	0	3366	835	29	2	1626	2	CHFR	12	133446307	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2611833	133446307	405588	618	64324										
ZMYM2	0	genome.wustl.edu	37	chr13	20601421	20601421	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatgcctgatggaaaactgtAcaacttttgcaattccagtt	7	8	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	20601421	20601421	A	T	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.1814	p.Y605F	1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	154	0	0	102	27	20.93	-	-	-	T	20601421	A	T	20601421	3	4	727	1	0	0	0	0	1	0	0	0	17796	391	14	5	1840	5	ZMYM2	13	20601421	Missense_Mutation	SNP	A	TCGA-D8-A27G-01A-11D-A16D-09		20601421	94568457	619	64325										
CENPJ	0	genome.wustl.edu	37	chr13	25479707	25479707	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcattattagggtagcatgtCtgcggcgtcccataagtgga	12	8	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	25479707	25479707	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	silent	c.2469	p.Q823	0.000	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	57	0	0	54	11	16.92	-	-	-	T	25479707	C	T	25479707	2	4	727	1	0	0	0	0	0	0	0	1	3263	912	32	2		2	CENPJ	13	25479707	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4878286	25479707	89690171	620	64326										
MTUS2	0	genome.wustl.edu	37	chr13	30077140	30077140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcccatgcagacagctgtcgGaggaaaatgctaacctccag	11	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	30077140	30077140	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	missense	c.3937	p.E1313K	0.999	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	37	0	0	24	6	20	-	-	-	A	30077140	G	A	30077140	3	1	727	1	0	0	0	0	1	0	0	0	10038	1175	41	2	4049	2	MTUS2	13	30077140	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4597433	30077140	85092738	621	64327										
B3GALTL	0	genome.wustl.edu	37	chr13	31803344	31803344	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttaaaaggaattgtattcgtCatccagagtcaaagtaattc	7	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	31803344	31803344	C	A	SNP	B3GALTL	ENST00000343307	human	ensembl	69_37n	1	known	silent	c.183	p.V61	1.000	NULL	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	50	0	0	52	13	19.7	-	-	-	A	31803344	C	A	31803344	2	1	727	1	0	0	0	0	0	0	0	1	1256	813	29	2		2	B3GALTL	13	31803344	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1726204	31803344	83366534	622	64328										
RXFP2	0	genome.wustl.edu	37	chr13	32366114	32366114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatctttttgtcattggcatGagatctttcattaaagctga	7	6	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	32366114	32366114	G	A	SNP	RXFP2	ENST00000298386	human	ensembl	69_37n	1	known	missense	c.1317	p.M439I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_supfam,prints_Relaxin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gphrmn_rcpt	-	no_errors	RXFP2	HGNC	ENSG00000133105	102	0	0	82	30	26.79	-	-	-	A	32366114	G	A	32366114	3	1	727	1	0	0	0	0	1	0	0	0	13846	1290	45	2	1375	2	RXFP2	13	32366114	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	562770	32366114	82803764	623	64329										
BRCA2	0	genome.wustl.edu	37	chr13	32915015	32915015	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaccaaagtgtcacttgttGagaacattcatgttttggga	10	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	32915015	32915015	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.6523	p.E2175Q	0.001	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	40	0	0	31	12	27.91	-	-	-	C	32915015	G	C	32915015	3	2	727	1	0	0	0	0	1	0	0	0	1507	1291	45	2	6561	2	BRCA2	13	32915015	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	548901	32915015	82254863	624	64330										
CPB2	0	genome.wustl.edu	37	chr13	46658437	46658437	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaaaatggacttgttttttCttcacaataaggtcagctgt	7	6	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	46658437	46658437	C	G	SNP	CPB2	ENST00000181383	human	ensembl	69_37n	-1	known	missense	c.192	p.K64N	0.031	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618	78	0	0	65	25	27.78	-	-	-	G	46658437	C	G	46658437	3	3	727	1	0	0	0	0	1	0	0	0	3827	912	32	2	1115	2	CPB2	13	46658437	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	13743422	46658437	68511441	625	64331										
RCBTB1	0	genome.wustl.edu	37	chr13	50129757	50129757	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcgaggagttggttgatttGctgtagaacctgatcccact	11	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	50129757	50129757	G	C	SNP	RCBTB1	ENST00000258646	human	ensembl	69_37n	-1	known	missense	c.497	p.A166G	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_Reg_chr_condens,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	78	0	0	76	20	20.83	-	-	-	C	50129757	G	C	50129757	3	2	727	1	0	0	0	0	1	0	0	0	13254	1319	46	4	1130	4	RCBTB1	13	50129757	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3471320	50129757	65040121	626	64332										
DLEU7	0	genome.wustl.edu	37	chr13	51287277	51287277	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacatcccatctcatcccatCtggcattcagaatttggcac	5	14	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	51287277	51287277	C	T	SNP	DLEU7	ENST00000443723	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.335	-	-	-	no_errors	DLEU7	HGNC	ENSG00000186047	34	0	0	36	13	26.53	-	-	-	T	51287277	C	T	51287277	1	4	727	0	1	0	0	0	0	0	0	0	4589	928	32	2		2	DLEU7	13	51287277	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1157520	51287277	63882601	627	64333										
TBC1D4	0	genome.wustl.edu	37	chr13	75880569	75880569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcaccaacttcttcatagtCtaatttaacttttctggact	4	10	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	75880569	75880569	C	G	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.2632	p.D878H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	78	0	0	33	18	35.29	-	-	-	G	75880569	C	G	75880569	3	3	727	1	0	0	0	0	1	0	0	0	15717	913	32	2	1292	2	TBC1D4	13	75880569	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	24593292	75880569	39289309	628	64334										
RNF219	0	genome.wustl.edu	37	chr13	79209249	79209249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggagcaaaatacatacttttGaggtgatctgttatcaactt	8	6	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	79209249	79209249	G	C	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.634	p.Q212E	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	134	0	0	92	27	22.5	-	-	-	C	79209249	G	C	79209249	3	2	727	1	0	0	0	0	1	0	0	0	13568	1299	45	2	1554	2	RNF219	13	79209249	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3328680	79209249	35960629	629	64335										
SLITRK5	0	genome.wustl.edu	37	chr13	88328417	88328417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcatctcctattcagccctGgtgggggatgtagtttgtga	13	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	88328417	88328417	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	silent	c.774	p.L258	0.997	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	40	0	0	24	6	20	-	-	-	A	88328417	G	A	88328417	2	1	727	1	0	0	0	0	0	0	0	1	14835	1335	47	4		4	SLITRK5	13	88328417	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9119168	88328417	26841461	630	64336										
TM9SF2	0	genome.wustl.edu	37	chr13	100211679	100211679	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgcagtttatttcttaatCtatgcagtacactacttctt	4	9	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	100211679	100211679	C	G	SNP	TM9SF2	ENST00000376387	human	ensembl	69_37n	1	known	missense	c.1815	p.I605M	0.980	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304	123	0	0	77	30	28.04	-	-	-	G	100211679	C	G	100211679	3	3	727	1	0	0	0	0	1	0	0	0	16073	903	32	2	1877	2	TM9SF2	13	100211679	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	11883262	100211679	14958199	631	64337										
BIVM	0	genome.wustl.edu	37	chr13	103459616	103459616	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agaaacttttacactgcattCaatgcctaacgttgcagaaa	6	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	103459616	103459616	C	T	SNP	BIVM	ENST00000481069	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BIVM	HGNC	ENSG00000134897	28	0	0	26	12	30.77	-	-	-	T	103459616	C	T	103459616	1	4	727	0	1	0	0	0	0	0	0	0	1446	841	29	2		2	BIVM	13	103459616	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3247937	103459616	11710262	632	64338										
ARGLU1	0	genome.wustl.edu	37	chr13	107220013	107220013	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgcttgctcaccgtgcgcccGaagatgtcgatgcggtcggg	15	13	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	107220013	107220013	G	A	SNP	ARGLU1	ENST00000400198	human	ensembl	69_37n	-1	known	silent	c.255	p.F85	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884	26	0	0	17	6	26.09	-	-	-	A	107220013	G	A	107220013	2	1	727	1	0	0	0	0	0	0	0	1	862	1049	37	1		1	ARGLU1	13	107220013	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3760397	107220013	7949865	633	64339										
MYO16	0	genome.wustl.edu	37	chr13	109707850	109707850	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttgataatttttacgtgtCtgctcagctacaatatattg	6	6	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	109707850	109707850	C	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.3176	p.S1059F	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	97	0	0	82	15	15.46	-	-	-	T	109707850	C	T	109707850	3	4	727	1	0	0	0	0	1	0	0	0	10136	913	32	2	3278	2	MYO16	13	109707850	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2487837	109707850	5462028	634	64340										
COL4A2	0	genome.wustl.edu	37	chr13	111125395	111125395	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggaaaggggcctccctggaGaagtcctgggagctcagccc	16	12	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	111125395	111125395	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.2323	p.E775K	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	12	0	0	10	6	37.5	-	-	-	A	111125395	G	A	111125395	3	1	727	1	0	0	0	0	1	0	0	0	3720	943	33	2	2433	2	COL4A2	13	111125395	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1417545	111125395	4044483	635	64341										
GAS6	0	genome.wustl.edu	37	chr13	114537535	114537535	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccgcctacctcacaggtgtCcatgtcctgggacagcttga	11	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	114537535	114537535	C	A	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	missense	c.823	p.D275Y	1.000	superfamily_ConA-like_lec_gl,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	21	0	0	12	4	25	-	-	-	A	114537535	C	A	114537535	3	1	727	1	0	0	0	0	1	0	0	0	6299	855	30	2	1245	2	GAS6	13	114537535	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3412140	114537535	632343	636	64342										
UPF3A	0	genome.wustl.edu	37	chr13	115048332	115048332	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctttatcctcatctctactCaagagcatacattaatttta	2	10	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	13	115048332	115048332	C	T	SNP	UPF3A	ENST00000375299	human	ensembl	69_37n	1	known	missense	c.335	p.S112L	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062	146	0	0	133	36	21.18	-	-	-	T	115048332	C	T	115048332	3	4	727	1	0	0	0	0	1	0	0	0	17102	838	29	2	345	2	UPF3A	13	115048332	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	510797	115048332	121546	637	64343										
OR4E2	0	genome.wustl.edu	37	chr14	22133391	22133391	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctgtttttcatggcattctCagccatttatatgctaacgc	7	10	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	22133391	22133391	C	A	SNP	OR4E2	ENST00000408935	human	ensembl	69_37n	1	known	nonsense	c.95	p.S32*	0.514	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977	122	0	0	106	19	15.2	-	-	-	A	22133391	C	A	22133391	4	1	727	1	0	0	0	0	0	1	0	0	11133	838	29	2	97	2	OR4E2	14	22133391	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		22133391	85216149	638	64344										
C14orf93	0	genome.wustl.edu	37	chr14	23457139	23457139	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cggcgacttcgaagtttcttCtcctctttttccttcaggcc	7	14	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	23457139	23457139	C	G	SNP	C14orf93	ENST00000299088	human	ensembl	69_37n	-1	known	missense	c.1170	p.E390D	1.000	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802	71	0	0	44	11	20	-	-	-	G	23457139	C	G	23457139	3	3	727	1	0	0	0	0	1	0	0	0	1794	912	32	2	454	2	C14orf93	14	23457139	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1323748	23457139	83892401	639	64345										
LRRC16B	0	genome.wustl.edu	37	chr14	24534912	24534912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggttcacggtgttgcccttCccgggttggaaagagccaag	15	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	24534912	24534912	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.3478	p.P1160S	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	45	0	0	38	16	29.09	-	-	-	T	24534912	C	T	24534912	3	4	727	1	0	0	0	0	1	0	0	0	9038	855	30	2	3612	2	LRRC16B	14	24534912	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1077773	24534912	82814628	640	64346										
PSMA6	0	genome.wustl.edu	37	chr14	35782183	35782183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttaaagccactgcagcggGagttaaacaaactgagtcaa	10	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	35782183	35782183	G	A	SNP	PSMA6	ENST00000261479	human	ensembl	69_37n	1	known	missense	c.506	p.G169E	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902	62	0	0	50	7	12.28	-	-	-	A	35782183	G	A	35782183	3	1	727	1	0	0	0	0	1	0	0	0	12751	1174	41	2	524	2	PSMA6	14	35782183	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	11247271	35782183	71567357	641	64347										
RALGAPA1	0	genome.wustl.edu	37	chr14	36147276	36147276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtctgtgacctggagcccaGaggtgagtggactggggaag	18	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	36147276	36147276	G	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.3127	p.L1043V	0.991	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	66	0	0	50	15	23.08	-	-	-	C	36147276	G	C	36147276	3	2	727	1	0	0	0	0	1	0	0	0	13096	933	33	2	3357	2	RALGAPA1	14	36147276	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	365093	36147276	71202264	642	64348										
MIPOL1	0	genome.wustl.edu	37	chr14	38016173	38016173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggaccatgaggacagtgatCtgattgaaaaaaaacgacag	12	6	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	38016173	38016173	C	G	SNP	MIPOL1	ENST00000327441	human	ensembl	69_37n	1	known	missense	c.1326	p.I442M	1.000	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338	70	0	0	46	22	32.35	-	-	-	G	38016173	C	G	38016173	3	3	727	1	0	0	0	0	1	0	0	0	9664	903	32	2	1368	2	MIPOL1	14	38016173	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1868897	38016173	69333367	643	64349										
CTAGE5	0	genome.wustl.edu	37	chr14	39815162	39815162	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaggcaagacagattttgttCtaattctggtagactgtctg	10	6	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	39815162	39815162	C	T	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	missense	c.1901	p.S634F	0.997	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	88	0	0	82	20	19.61	-	-	-	T	39815162	C	T	39815162	3	4	727	1	0	0	0	0	1	0	0	0	4026	913	32	2	1999	2	CTAGE5	14	39815162	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1798989	39815162	67534378	644	64350										
FBXO33	0	genome.wustl.edu	37	chr14	39871049	39871049	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actattactcaggatttcttCaaacagttgctgaattctat	5	8	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	39871049	39871049	C	T	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	missense	c.727	p.E243K	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	35	0	0	16	5	23.81	-	-	-	T	39871049	C	T	39871049	3	4	727	1	0	0	0	0	1	0	0	0	5789	835	29	2	948	2	FBXO33	14	39871049	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	55887	39871049	67478491	645	64351										
SOS2	0	genome.wustl.edu	37	chr14	50671070	50671070	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagctgaaaaatcagctcttCaatataatagagagactctt	6	8	4	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	50671070	50671070	C	A	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	nonsense	c.145	p.E49*	1.000	superfamily_Histone-fold	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	72	0	0	72	10	12.2	-	-	-	A	50671070	C	A	50671070	4	1	727	1	0	0	0	0	0	1	0	0	15026	835	29	2	3941	2	SOS2	14	50671070	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10800021	50671070	56678470	646	64352										
TMX1	0	genome.wustl.edu	37	chr14	51721100	51721100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacaacctttgaaaaaagtgGaggaggaacaagaggcggat	13	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	51721100	51721100	G	A	SNP	TMX1	ENST00000457354	human	ensembl	69_37n	1	known	missense	c.706	p.E236K	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX1	HGNC	ENSG00000139921	89	0	0	55	21	27.63	-	-	-	A	51721100	G	A	51721100	3	1	727	1	0	0	0	0	1	0	0	0	16361	1175	41	2	736	2	TMX1	14	51721100	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1050030	51721100	55628440	647	64353										
WDHD1	0	genome.wustl.edu	37	chr14	55453880	55453880	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctacctctgtgataaacaatGaaaagctgttctccatgtcc	6	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	55453880	55453880	G	T	SNP	WDHD1	ENST00000360586	human	ensembl	69_37n	-1	known	missense	c.1752	p.F584L	0.997	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_superfamily,smart_WD40_repeat,smart_HMG_superfamily,pfscan_HMG_superfamily,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554	48	0	0	38	7	15.22	-	-	-	T	55453880	G	T	55453880	3	4	727	1	0	0	0	0	1	0	0	0	17368	1281	45	2	1689	2	WDHD1	14	55453880	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3732780	55453880	51895660	648	64354										
LGALS3	0	genome.wustl.edu	37	chr14	55611885	55611885	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggttgcagtgaatgatgctCacttgttgcagtacaatcat	10	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	55611885	55611885	C	T	SNP	LGALS3	ENST00000254301	human	ensembl	69_37n	1	known	missense	c.649	p.H217Y	0.991	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS3	HGNC	ENSG00000131981	52	0	0	59	7	10.61	-	-	-	T	55611885	C	T	55611885	3	4	727	1	0	0	0	0	1	0	0	0	8797	826	29	2	667	2	LGALS3	14	55611885	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	158005	55611885	51737655	649	64355										
KTN1	0	genome.wustl.edu	37	chr14	56101368	56101368	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgctgagcaagcagctactCagttgaaggtgatatattct	10	7	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	56101368	56101368	C	T	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	nonsense	c.1453	p.Q485*	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	26	0	0	31	7	18.42	-	-	-	T	56101368	C	T	56101368	4	4	727	1	0	0	0	0	0	1	0	0	8639	827	29	2	1483	2	KTN1	14	56101368	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	489483	56101368	51248172	650	64356										
DHRS7	0	genome.wustl.edu	37	chr14	60619764	60619764	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgcttcctctcgatcatgtGaggcagaacacattttgtca	8	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	60619764	60619764	G	A	SNP	DHRS7	ENST00000216500	human	ensembl	69_37n	-1	known	missense	c.526	p.H176Y	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7	HGNC	ENSG00000100612	38	0	0	43	9	17.31	-	-	-	A	60619764	G	A	60619764	3	1	727	1	0	0	0	0	1	0	0	0	4531	1290	45	2	509	2	DHRS7	14	60619764	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4518396	60619764	46729776	651	64357										
RHOJ	0	genome.wustl.edu	37	chr14	63757637	63757637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaatgttcagctctgactcaGaaaggtctcaaagcggtttt	10	8	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	63757637	63757637	G	A	SNP	RHOJ	ENST00000316754	human	ensembl	69_37n	1	known	silent	c.540	p.Q180	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOJ	HGNC	ENSG00000126785	104	0	0	70	11	13.25	-	-	-	A	63757637	G	A	63757637	2	1	727	1	0	0	0	0	0	0	0	1	13425	933	33	2		2	RHOJ	14	63757637	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3137873	63757637	43591903	652	64358										
SGPP1	0	genome.wustl.edu	37	chr14	64153287	64153287	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatgaatggagcatatttgtGagtttggttgaagttgtcaa	13	2	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	64153287	64153287	G	C	SNP	SGPP1	ENST00000247225	human	ensembl	69_37n	-1	known	missense	c.862	p.H288D	0.978	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP1	HGNC	ENSG00000126821	43	0	0	29	13	30.95	-	-	-	C	64153287	G	C	64153287	3	2	727	1	0	0	0	0	1	0	0	0	14307	1290	45	2	467	2	SGPP1	14	64153287	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	395650	64153287	43196253	653	64359										
ATP6V1D	0	genome.wustl.edu	37	chr14	67810151	67810151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttcatccaaagtaacaaaaGaagtctaaaataagaacaaa	4	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	67810151	67810151	G	C	SNP	ATP6V1D	ENST00000216442	human	ensembl	69_37n	-1	known	missense	c.461	p.S154C	1.000	pfam_V_ATPase_D,tigrfam_V_ATPase_D	pfam_V_ATPase_D,tigrfam_V_ATPase_D	-	no_errors	ATP6V1D	HGNC	ENSG00000100554	51	0	0	32	12	27.27	-	-	-	C	67810151	G	C	67810151	3	2	727	1	0	0	0	0	1	0	0	0	1186	942	33	2	294	2	ATP6V1D	14	67810151	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3656864	67810151	39539389	654	64360										
VTI1B	0	genome.wustl.edu	37	chr14	68129245	68129245	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaatccctgatcaatttcttCttttcttctagaaaagatag	4	8	5	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	68129245	68129245	C	A	SNP	VTI1B	ENST00000554659	human	ensembl	69_37n	-1	known	missense	c.123	p.K41N	1.000	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1B	HGNC	ENSG00000100568	137	0	0	116	44	27.5	-	-	-	A	68129245	C	A	68129245	3	1	727	1	0	0	0	0	1	0	0	0	17333	912	32	2	595	2	VTI1B	14	68129245	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	319094	68129245	39220295	655	64361										
RGS6	0	genome.wustl.edu	37	chr14	72985156	72985156	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtttctggctccaggggctCcaagtgcaatcaacctggat	11	11	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	72985156	72985156	C	G	SNP	RGS6	ENST00000553525	human	ensembl	69_37n	1	known	missense	c.1189	p.P397A	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS6	HGNC	ENSG00000182732	60	0	0	48	8	14.04	-	-	-	G	72985156	C	G	72985156	3	3	727	1	0	0	0	0	1	0	0	0	13393	855	30	2	1243	2	RGS6	14	72985156	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4855911	72985156	34364384	656	64362										
SPTLC2	0	genome.wustl.edu	37	chr14	77978728	77978728	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgcaataggtccccaacttCatctatctcctttaaagcct	4	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	77978728	77978728	C	T	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.1588	p.E530K	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	79	0	0	52	18	25.35	-	-	-	T	77978728	C	T	77978728	3	4	727	1	0	0	0	0	1	0	0	0	15215	835	29	2	104	2	SPTLC2	14	77978728	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4993572	77978728	29370812	657	64363										
SEL1L	0	genome.wustl.edu	37	chr14	81993170	81993170	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctgtgacactttccccctCttggctcttgaggctgtctt	8	13	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	81993170	81993170	C	G	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	missense	c.247	p.E83Q	0.999	NULL	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537	130	0	0	103	24	18.9	-	-	-	G	81993170	C	G	81993170	3	3	727	1	0	0	0	0	1	0	0	0	14098	922	32	2	2213	2	SEL1L	14	81993170	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4014442	81993170	25356370	658	64364										
CCDC88C	0	genome.wustl.edu	37	chr14	91745599	91745599	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taccttttaggttaagaggtGagctgttgctggatgtgttt	13	4	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	91745599	91745599	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.4751	p.S1584L	0.998	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	118	0	0	88	12	12	-	-	-	A	91745599	G	A	91745599	3	1	727	1	0	0	0	0	1	0	0	0	2892	1294	45	2	1347	2	CCDC88C	14	91745599	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	9752429	91745599	15603941	659	64365										
CCDC88C	0	genome.wustl.edu	37	chr14	91791240	91791240	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttttcttccagcagctcctCaattcgtttcttatctgtgt	6	11	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	91791240	91791240	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.1225	p.E409K	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	111	0	0	101	17	14.29	-	-	-	T	91791240	C	T	91791240	3	4	727	1	0	0	0	0	1	0	0	0	2892	835	29	2	4937	2	CCDC88C	14	91791240	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	45641	91791240	15558300	660	64366										
NDUFB1	0	genome.wustl.edu	37	chr14	92583859	92583859	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaccttttaaataacatactCttgttccggaaggcagttag	7	8	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	92583859	92583859	C	G	SNP	NDUFB1	ENST00000329559	human	ensembl	69_37n	-1	known	missense	c.264	p.K88N	1.000	pfam_NADH_UbQ_OxRdtase_MNLL_su	pfam_NADH_UbQ_OxRdtase_MNLL_su	-	no_errors	NDUFB1	HGNC	ENSG00000183648	75	0	0	44	13	22.81	-	-	-	G	92583859	C	G	92583859	3	3	727	1	0	0	0	0	1	0	0	0	10350	912	32	2	61	2	NDUFB1	14	92583859	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	792619	92583859	14765681	661	64367										
NDUFB1	0	genome.wustl.edu	37	chr14	92583888	92583888	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaaggcagttagccgttcatCactctttctgtctaaataac	7	10	5	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	92583888	92583888	C	A	SNP	NDUFB1	ENST00000329559	human	ensembl	69_37n	-1	known	missense	c.235	p.D79Y	1.000	pfam_NADH_UbQ_OxRdtase_MNLL_su	pfam_NADH_UbQ_OxRdtase_MNLL_su	-	no_errors	NDUFB1	HGNC	ENSG00000183648	66	0	0	48	11	18.64	-	-	-	A	92583888	C	A	92583888	3	1	727	1	0	0	0	0	1	0	0	0	10350	826	29	2	90	2	NDUFB1	14	92583888	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	29	92583888	14765652	662	64368										
DICER1	0	genome.wustl.edu	37	chr14	95569715	95569715	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catatatgaaaggcggccctCatgcgcatcagggtaagtgc	12	10	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	95569715	95569715	C	G	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.4018	p.E1340Q	1.000	pfam_RNase_III_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,pfscan_RNase_III_dom	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	34	0	0	24	7	22.58	-	-	-	G	95569715	C	G	95569715	3	3	727	1	0	0	0	0	1	0	0	0	4557	835	29	2	1778	2	DICER1	14	95569715	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2985827	95569715	11779825	663	64369										
ATG2B	0	genome.wustl.edu	37	chr14	96788996	96788996	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcctcctggtagtgaccatCattctcctcttcttcttcag	5	14	6	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	96788996	96788996	C	T	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.2617	p.D873N	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	109	0	0	84	11	11.58	-	-	-	T	96788996	C	T	96788996	3	4	727	1	0	0	0	0	1	0	0	0	1098	826	29	2	3723	2	ATG2B	14	96788996	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1219281	96788996	10560544	664	64370										
PPP2R5C	0	genome.wustl.edu	37	chr14	102376010	102376010	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatgactgtacacaacagttCaaagcagagaaactaaagtg	9	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	14	102376010	102376010	C	G	SNP	PPP2R5C	ENST00000557071	human	ensembl	69_37n	1	known	nonsense	c.26	p.S9*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R5C	HGNC	ENSG00000078304	62	0	0	36	12	24.49	-	-	-	G	102376010	C	G	102376010	4	3	727	1	0	0	0	0	0	1	0	0	12471	825	29	2	1647	2	PPP2R5C	14	102376010	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5587014	102376010	4973530	665	64371										
HERC2	0	genome.wustl.edu	37	chr15	28517375	28517375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actcacgtgcatgtcgccctCggagtggggtgcatccttcc	12	14	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	28517375	28517375	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357K	0.993	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	41	0	0	33	5	13.16	-	-	-	T	28517375	C	T	28517375	3	4	727	1	0	0	0	0	1	0	0	0	7109	893	31	1	13775	1	HERC2	15	28517375	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		28517375	74014017	666	64372										
FMN1	0	genome.wustl.edu	37	chr15	33149276	33149276	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagatactcctttggggactCcttgcacaccaccaccatct	7	15	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	33149276	33149276	C	G	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.3199	p.E1067Q	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	94	0	0	62	15	19.23	-	-	-	G	33149276	C	G	33149276	3	3	727	1	0	0	0	0	1	0	0	0	5995	864	30	2	411	2	FMN1	15	33149276	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4631901	33149276	69382116	667	64373										
RYR3	0	genome.wustl.edu	37	chr15	33825550	33825550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatcaagatcccagacagaCaaacttgcctttgatgtagg	8	10	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	33825550	33825550	C	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.393	p.D131E	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	73	0	0	45	11	19.64	-	-	-	A	33825550	C	A	33825550	3	1	727	1	0	0	0	0	1	0	0	0	13856	477	17	4	411	4	RYR3	15	33825550	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	676274	33825550	68705842	668	64374										
AQR	0	genome.wustl.edu	37	chr15	35256470	35256470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatttcttcttgatgtgggGagcccagtatttacatgcta	10	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	35256470	35256470	G	A	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	missense	c.97	p.P33S	1.000	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	60	0	0	35	13	27.08	-	-	-	A	35256470	G	A	35256470	3	1	727	1	0	0	0	0	1	0	0	0	837	1174	41	2	4496	2	AQR	15	35256470	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1430920	35256470	67274922	669	64375										
C15orf53	0	genome.wustl.edu	37	chr15	38990571	38990571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagaagcccagaagtggcttCcagcccctcctacctaactg	9	15	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	38990571	38990571	C	T	SNP	C15orf53	ENST00000318792	human	ensembl	69_37n	1	known	missense	c.365	p.S122F	0.005	NULL	NULL	-	no_errors	C15orf53	HGNC	ENSG00000175779	44	0	0	23	7	22.58	-	-	-	T	38990571	C	T	38990571	3	4	727	1	0	0	0	0	1	0	0	0	1813	855	30	2	371	2	C15orf53	15	38990571	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3734101	38990571	63540821	670	64376										
TP53BP1	0	genome.wustl.edu	37	chr15	43701291	43701292	+	Frame_Shift_Ins	INS	-	-	A													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agacactggtaagctgtgttINSacactgcaagaaaagaagca							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	43701291	43701292	-	A	INS	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5404_5403	p.N1801fs	1.000:1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	36	0	0	29	8	21.62	-	-	-	A	43701292	-	A	43701291	7	5	727	1	0	1	1	0	0	0	0	0	16479	1754	61	0	541	0	TP53BP1	15	43701291	Frame_Shift_Ins	INS	-	TCGA-D8-A27G-01A-11D-A16D-09	4710720	43701291	58830101	671	64377										
FBN1	0	genome.wustl.edu	37	chr15	48703211	48703211	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaagcaaaacctggattttCatcttcagattatcacccag	6	10	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	48703211	48703211	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.8592	p.M2864I	1.000	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	124	0	0	113	38	25.17	-	-	-	T	48703211	C	T	48703211	3	4	727	1	0	0	0	0	1	0	0	0	5748	826	29	2	27	2	FBN1	15	48703211	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5001920	48703211	53828181	672	64378										
CEP152	0	genome.wustl.edu	37	chr15	49048259	49048259	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcttgtcctcagaatcactGatgtgctccttttgggtatc	9	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	49048259	49048259	G	A	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.3186	p.I1062	0.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	99	0	0	72	29	28.43	-	-	-	A	49048259	G	A	49048259	2	1	727	1	0	0	0	0	0	0	0	1	3277	1280	45	2		2	CEP152	15	49048259	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	345048	49048259	53483133	673	64379										
DMXL2	0	genome.wustl.edu	37	chr15	51778354	51778354	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttcattacccaataggcaaGactacgcaggaaaggatcag	9	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	51778354	51778354	G	A	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.5398	p.L1800F	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	73	0	0	78	15	16.13	-	-	-	A	51778354	G	A	51778354	3	1	727	1	0	0	0	0	1	0	0	0	4631	942	33	2	3799	2	DMXL2	15	51778354	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2730095	51778354	50753038	674	64380										
ONECUT1	0	genome.wustl.edu	37	chr15	53080980	53080980	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctccttggccggctcacctgCtaagcggagcgcggacatgc	13	15	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	53080980	53080980	C	G	SNP	ONECUT1	ENST00000305901	human	ensembl	69_37n	-1	known	missense	c.1102	p.A368P	1.000	superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856	30	0	0	12	10	45.45	-	-	-	G	53080980	C	G	53080980	3	3	727	1	0	0	0	0	1	0	0	0	10941	797	28	4	303	4	ONECUT1	15	53080980	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1302626	53080980	49450412	675	64381										
ONECUT1	0	genome.wustl.edu	37	chr15	53081051	53081051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acatcctccggaaggtctccCggccggatttgagtttgctc	11	13	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	53081051	53081051	C	T	SNP	ONECUT1	ENST00000305901	human	ensembl	69_37n	-1	known	missense	c.1031	p.R344Q	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856	66	0	0	33	14	29.79	-	-	-	T	53081051	C	T	53081051	3	4	727	1	0	0	0	0	1	0	0	0	10941	652	23	1	374	1	ONECUT1	15	53081051	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	71	53081051	49450341	676	64382										
HERC1	0	genome.wustl.edu	37	chr15	63964894	63964894	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcagcttgttgatcaatctCtagaaaccaaaaaaaaggtt	6	7	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	63964894	63964894	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	splice_site	c.7847-1	e38-1	1.000	-	-	-	no_errors	HERC1	HGNC	ENSG00000103657	65	0	0	55	21	27.63	-	-	-	G	63964894	C	G	63964894	5	3	727	1	0	0	0	0	0	0	1	0	7108	927	32	2	6899	2	HERC1	15	63964894	Splice_Site	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10883843	63964894	38566498	677	64383										
HERC1	0	genome.wustl.edu	37	chr15	64017704	64017704	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accagcaggatcaattagttCtggccctcctaaagacaaaa	7	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	64017704	64017704	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3355	p.E1119K	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	35	0	0	26	11	29.73	-	-	-	T	64017704	C	T	64017704	3	4	727	1	0	0	0	0	1	0	0	0	7108	922	32	2	11474	2	HERC1	15	64017704	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	52810	64017704	38513688	678	64384										
DPP8	0	genome.wustl.edu	37	chr15	65790229	65790229	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacataagtgagtctcctttCttctctggttacgatgttag	8	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	65790229	65790229	C	T	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.736	p.E246K	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	91	0	0	86	10	10.42	-	-	-	T	65790229	C	T	65790229	3	4	727	1	0	0	0	0	1	0	0	0	4767	922	32	2	2024	2	DPP8	15	65790229	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1772525	65790229	36741163	679	64385										
IQCH	0	genome.wustl.edu	37	chr15	67692531	67692531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	taaaatggactctgagttccGaggaaatgggactgcatttt	11	6	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	67692531	67692531	G	A	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	1	known	missense	c.1985	p.R662Q	1.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	92	0	0	79	31	28.18	-	-	-	A	67692531	G	A	67692531	3	1	727	1	0	0	0	0	1	0	0	0	7865	1058	37	1	2167	1	IQCH	15	67692531	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1902302	67692531	34838861	680	64386										
CD276	0	genome.wustl.edu	37	chr15	73996053	73996053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tggtggccctagtgggcaccGatgccaccctgcgctgctcc	13	16	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	73996053	73996053	G	A	SNP	CD276	ENST00000318443	human	ensembl	69_37n	1	known	missense	c.787	p.D263N	0.878	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD276	HGNC	ENSG00000103855	11	0	0	11	6	35.29	-	-	-	A	73996053	G	A	73996053	3	1	727	1	0	0	0	0	1	0	0	0	3021	1058	37	1	801	1	CD276	15	73996053	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6303522	73996053	28535339	681	64387										
WDR61	0	genome.wustl.edu	37	chr15	78585121	78585121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctccactgtaggtccagcctCtcatcacgccttcaacaggg	8	16	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	78585121	78585121	C	G	SNP	WDR61	ENST00000267973	human	ensembl	69_37n	-1	known	missense	c.156	p.E52D	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR61	HGNC	ENSG00000140395	44	0	0	27	12	30.77	-	-	-	G	78585121	C	G	78585121	3	3	727	1	0	0	0	0	1	0	0	0	17409	912	32	2	789	2	WDR61	15	78585121	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4589068	78585121	23946271	682	64388										
IREB2	0	genome.wustl.edu	37	chr15	78778155	78778155	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acattacctcagttcaagtgGagtattaccatatctaagta	6	8	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	78778155	78778155	G	C	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.1682	p.G561A	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	66	0	0	60	24	28.57	-	-	-	C	78778155	G	C	78778155	3	2	727	1	0	0	0	0	1	0	0	0	7880	1174	41	2	1732	2	IREB2	15	78778155	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	193034	78778155	23753237	683	64389										
KIAA1199	0	genome.wustl.edu	37	chr15	81217032	81217032	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggacaagcggccgttcctctCaatcatctctgccaggtaat	9	13	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	81217032	81217032	C	T	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	missense	c.2273	p.S758L	0.998	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	88	0	0	42	8	16	-	-	-	T	81217032	C	T	81217032	3	4	727	1	0	0	0	0	1	0	0	0	8265	838	29	2	2335	2	KIAA1199	15	81217032	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2438877	81217032	21314360	684	64390										
IL16	0	genome.wustl.edu	37	chr15	81591674	81591674	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagaatttaggaagaaaagtCactgtatgatgtaatgcaca	9	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	81591674	81591674	C	A	SNP	IL16	ENST00000558857	human	ensembl	69_37n	1	known	missense	c.121	p.H41N	0.000	NULL	NULL	-	no_start_codon	IL16	HGNC	ENSG00000172349	19	0	0	19	8	29.63	-	-	-	A	81591674	C	A	81591674	3	1	727	1	0	0	0	0	1	0	0	0	7687	841	29	2		2	IL16	15	81591674	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	374642	81591674	20939718	685	64391										
C15orf40	0	genome.wustl.edu	37	chr15	83677321	83677321	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttatccaaaaccacatcactCttcctgagttctaggacctt	4	13	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	83677321	83677321	C	A	SNP	C15orf40	ENST00000451195	human	ensembl	69_37n	-1	known	missense	c.345	p.K115N	1.000	pfam_DUF167,superfamily_DUF167	pfam_DUF167,superfamily_DUF167	-	no_errors	C15orf40	HGNC	ENSG00000169609	43	0	0	24	14	36.84	-	-	-	A	83677321	C	A	83677321	3	1	727	1	0	0	0	0	1	0	0	0	1806	912	32	2	596	2	C15orf40	15	83677321	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2085647	83677321	18854071	686	64392										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84539660	84539660	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaatttcagaggggctccgaGaggcaaacttttaagattcc	11	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	84539660	84539660	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	silent	c.909	p.E303	0.976	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	58	0	0	34	11	23.91	-	-	-	A	84539660	G	A	84539660	2	1	727	1	0	0	0	0	0	0	0	1	276	933	33	2		2	ADAMTSL3	15	84539660	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	862339	84539660	17991732	687	64393										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84539697	84539697	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttccaggacctctgatggctGatttcatcttcaaggtagga	10	9	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	84539697	84539697	G	C	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.946	p.D316H	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	51	0	0	31	14	31.11	-	-	-	C	84539697	G	C	84539697	3	2	727	1	0	0	0	0	1	0	0	0	276	1290	45	2	976	2	ADAMTSL3	15	84539697	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	37	84539697	17991695	688	64394										
AKAP13	0	genome.wustl.edu	37	chr15	86077099	86077099	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaatgtattggggacagatCagagtttgcatggtgagaat	15	3	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	86077099	86077099	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	nonsense	c.466	p.Q156*	0.029	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	17	0	0	14	7	33.33	-	-	-	T	86077099	C	T	86077099	4	4	727	1	0	0	0	0	0	1	0	0	449	827	29	2	476	2	AKAP13	15	86077099	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1537402	86077099	16454293	689	64395										
AKAP13	0	genome.wustl.edu	37	chr15	86207934	86207934	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgactctttggtgtcactttCagaagaggatctggagtcag	12	7	5	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	86207934	86207934	C	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	nonsense	c.4952	p.S1651*	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	52	0	0	37	14	27.45	-	-	-	A	86207934	C	A	86207934	4	1	727	1	0	0	0	0	0	1	0	0	449	838	29	2	5056	2	AKAP13	15	86207934	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	130835	86207934	16323458	690	64396										
MAN2A2	0	genome.wustl.edu	37	chr15	91453858	91453858	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cattggggctcttccagcatCacgatgccatcactggcacg	10	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	91453858	91453858	C	T	SNP	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	missense	c.1705	p.H569Y	1.000	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	40	0	0	21	5	19.23	-	-	-	T	91453858	C	T	91453858	3	4	727	1	0	0	0	0	1	0	0	0	9286	826	29	2	1743	2	MAN2A2	15	91453858	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5245924	91453858	11077534	691	64397										
VPS33B	0	genome.wustl.edu	37	chr15	91551139	91551139	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aattctggtagttccatgctCagcagatccacatcaagagg	9	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	15	91551139	91551139	C	G	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	silent	c.459	p.L153	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	65	0	0	48	17	26.15	-	-	-	G	91551139	C	G	91551139	2	3	727	1	0	0	0	0	0	0	0	1	17299	813	29	2		2	VPS33B	15	91551139	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	97281	91551139	10980253	692	64398										
NPRL3	0	genome.wustl.edu	37	chr16	160604	160604	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggactgaggaccttcatttCctacaagaatcacaacacaa	7	11	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	160604	160604	C	G	SNP	NPRL3	ENST00000399953	human	ensembl	69_37n	-1	known	missense	c.548	p.G183A	0.680	pfam_NPR3	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148	43	0	0	28	7	19.44	-	-	-	G	160604	C	G	160604	3	3	727	1	0	0	0	0	1	0	0	0	10671	869	30	2	1192	2	NPRL3	16	160604	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		160604	90194149	693	64399										
CCDC78	0	genome.wustl.edu	37	chr16	773019	773019	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcccgctcccgttccagctCtgcctggcatggggatgtaa	12	14	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	773019	773019	C	G	SNP	CCDC78	ENST00000293889	human	ensembl	69_37n	-1	known	splice_site	c.1201-1	e13-1	1.000	-	-	-	no_errors	CCDC78	HGNC	ENSG00000162004	34	0	0	20	5	20	-	-	-	G	773019	C	G	773019	5	3	727	1	0	0	0	0	0	0	1	0	2879	927	32	2	124	2	CCDC78	16	773019	Splice_Site	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	612415	773019	89581734	694	64400										
GNPTG	0	genome.wustl.edu	37	chr16	1412861	1412861	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaaaggagatcaaaaggctGaaaggtttgctcacccagca	10	9	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	1412861	1412861	G	A	SNP	GNPTG	ENST00000204679	human	ensembl	69_37n	1	known	silent	c.777	p.L259	0.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581	45	0	0	31	7	18.42	-	-	-	A	1412861	G	A	1412861	2	1	727	1	0	0	0	0	0	0	0	1	6598	1277	45	2		2	GNPTG	16	1412861	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	639842	1412861	88941892	695	64401										
CRAMP1L	0	genome.wustl.edu	37	chr16	1712533	1712533	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctcttggtgcctggtccctCcagcacaggaagcaatgact	10	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	1712533	1712533	C	G	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.2456	p.S819C	0.961	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	37	0	0	12	7	36.84	-	-	-	G	1712533	C	G	1712533	3	3	727	1	0	0	0	0	1	0	0	0	3876	855	30	2	2498	2	CRAMP1L	16	1712533	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	299672	1712533	88642220	696	64402										
PDPK1	0	genome.wustl.edu	37	chr16	2636750	2636750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcacactccctgtcagcctCcgacacgggcctgccccaga	8	20	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	2636750	2636750	C	A	SNP	PDPK1	ENST00000342085	human	ensembl	69_37n	1	known	missense	c.1199	p.S400Y	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PDPK1	HGNC	ENSG00000140992	73	0	0	37	7	15.91	-	-	-	A	2636750	C	A	2636750	3	1	727	1	0	0	0	0	1	0	0	0	11760	855	30	2	1241	2	PDPK1	16	2636750	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	924217	2636750	87718003	697	64403										
THOC6	0	genome.wustl.edu	37	chr16	3077655	3077655	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgagccttctccctgtccttCtgatctctgacgacaccccc	6	19	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	3077655	3077655	C	T	SNP	THOC6	ENST00000326266	human	ensembl	69_37n	1	known	silent	c.1023	p.F341	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	THOC6	HGNC	ENSG00000131652	51	0	0	23	11	32.35	-	-	-	T	3077655	C	T	3077655	2	4	727	1	0	0	0	0	0	0	0	1	15964	912	32	2		2	THOC6	16	3077655	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	440905	3077655	87277098	698	64404										
ZSCAN10	0	genome.wustl.edu	37	chr16	3140465	3140465	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caaaatttcactgctgccaaGaagggacccatcttcaccag	7	13	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	3140465	3140465	G	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	69_37n	-1	known	missense	c.805	p.L269F	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182	30	0	0	19	5	20.83	-	-	-	A	3140465	G	A	3140465	3	1	727	1	0	0	0	0	1	0	0	0	18320	942	33	2	1376	2	ZSCAN10	16	3140465	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	62810	3140465	87214288	699	64405										
CREBBP	0	genome.wustl.edu	37	chr16	3900518	3900518	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gattaattaagctatggccaGagttactattgaggaggcct	11	6	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	3900518	3900518	G	C	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.578	p.S193C	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	70	0	0	62	8	11.27	-	-	-	C	3900518	G	C	3900518	3	2	727	1	0	0	0	0	1	0	0	0	3891	942	33	2	6870	2	CREBBP	16	3900518	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	760053	3900518	86454235	700	64406										
ALG1	0	genome.wustl.edu	37	chr16	5122995	5122995	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgcagaacaacagaattcaGattgtggggttgacagaact	11	6	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	5122995	5122995	G	T	SNP	ALG1	ENST00000262374	human	ensembl	69_37n	1	known	missense	c.252	p.Q84H	0.892	NULL	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011	95	0	0	79	36	31.3	-	-	-	T	5122995	G	T	5122995	3	4	727	1	0	0	0	0	1	0	0	0	510	933	33	2	258	2	ALG1	16	5122995	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1222477	5122995	85231758	701	64407										
CIITA	0	genome.wustl.edu	37	chr16	10989596	10989596	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacatggaaggtgatgaagaGaccagggaggcttatgccaa	15	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	10989596	10989596	G	C	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	1	known	missense	c.270	p.E90D	1.000	prints_MHC_II_transact	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	65	0	0	40	12	23.08	-	-	-	C	10989596	G	C	10989596	3	2	727	1	0	0	0	0	1	0	0	0	3457	933	33	2	280	2	CIITA	16	10989596	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5866601	10989596	79365157	702	64408										
ZC3H7A	0	genome.wustl.edu	37	chr16	11862259	11862259	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcactgatgaagatggtttGgtaactgcacttccaaaaaa	9	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	11862259	11862259	G	C	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	silent	c.1272	p.T424	0.070	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	93	0	0	78	26	24.53	-	-	-	C	11862259	G	C	11862259	2	2	727	1	0	0	0	0	0	0	0	1	17668	1335	47	4		4	ZC3H7A	16	11862259	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	872663	11862259	78492494	703	64409										
SMG1	0	genome.wustl.edu	37	chr16	18827805	18827805	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggtcaactgtttgtgtgctGacaaaagccattcagagctg	12	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	18827805	18827805	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	nonsense	c.10124	p.S3375*	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	70	0	0	52	7	11.86	-	-	-	C	18827805	G	C	18827805	4	2	727	1	0	0	0	0	0	1	0	0	14884	1294	45	2	888	2	SMG1	16	18827805	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6965546	18827805	71526948	704	64410										
SMG1	0	genome.wustl.edu	37	chr16	18895441	18895441	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgaccaagaagagtagtaGaaaatgcaagatcagctacc	9	8	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	18895441	18895441	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.1070	p.S357C	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	46	0	0	36	8	18.18	-	-	-	C	18895441	G	C	18895441	3	2	727	1	0	0	0	0	1	0	0	0	14884	942	33	2	10135	2	SMG1	16	18895441	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	67636	18895441	71459312	705	64411										
VWA3A	0	genome.wustl.edu	37	chr16	22103961	22103961	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccaaagatggagaaataaatGaagaaatacaggtgagggtg	13	3	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	22103961	22103961	G	A	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.334	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	74	0	0	30	19	38.78	-	-	-	A	22103961	G	A	22103961	3	1	727	1	0	0	0	0	1	0	0	0	17337	1290	45	2	5	2	VWA3A	16	22103961	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3208520	22103961	68250792	706	64412										
PALB2	0	genome.wustl.edu	37	chr16	23641648	23641648	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaggtaactgaaagtctgtGatactgagaaaagacagtag	11	5	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	23641648	23641648	G	A	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	silent	c.1827	p.I609	0.892	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	56	0	0	49	14	22.22	-	-	-	A	23641648	G	A	23641648	2	1	727	1	0	0	0	0	0	0	0	1	11479	1280	45	2		2	PALB2	16	23641648	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1537687	23641648	66713105	707	64413										
TMEM219	0	genome.wustl.edu	37	chr16	29982865	29982865	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctggtctagaacccggctctGagggcactggcctagttccc	12	14	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	29982865	29982865	G	A	SNP	TMEM219	ENST00000279396	human	ensembl	69_37n	1	known	silent	c.722	p.*241	0.997	NULL	NULL	-	no_errors	TMEM219	HGNC	ENSG00000149932	62	0	0	67	22	24.72	-	-	-	A	29982865	G	A	29982865	2	1	727	1	0	0	0	0	0	0	0	1	16237	1285	45	2		2	TMEM219	16	29982865	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6341217	29982865	60371888	708	64414										
ALDOA	0	genome.wustl.edu	37	chr16	30080850	30080850	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgtctacaaggctctgagtGaccaccacatctacctggaa	8	13	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	30080850	30080850	G	A	SNP	ALDOA	ENST00000338110	human	ensembl	69_37n	1	known	missense	c.655	p.D219N	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	61	0	0	29	11	26.83	-	-	-	A	30080850	G	A	30080850	3	1	727	1	0	0	0	0	1	0	0	0	507	1290	45	2	677	2	ALDOA	16	30080850	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	97985	30080850	60273903	709	64415										
ITGAL	0	genome.wustl.edu	37	chr16	30495230	30495230	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcacggatggggaggccactGacagtggcaacatcgatgcg	15	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	30495230	30495230	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	missense	c.805	p.D269N	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	38	0	0	19	6	24	-	-	-	A	30495230	G	A	30495230	3	1	727	1	0	0	0	0	1	0	0	0	7940	1290	45	2	835	2	ITGAL	16	30495230	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	414380	30495230	59859523	710	64416										
NETO2	0	genome.wustl.edu	37	chr16	47162345	47162345	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctaattaatggagggcttttCacgccacagtaacgatctat	8	9	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	47162345	47162345	C	G	SNP	NETO2	ENST00000562559	human	ensembl	69_37n	-1	putative	missense	c.25	p.E9Q	0.970	pfam_CUB,superfamily_CUB,pfscan_CUB	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NETO2	HGNC	ENSG00000171208	72	0	0	47	12	20	-	-	-	G	47162345	C	G	47162345	3	3	727	1	0	0	0	0	1	0	0	0	10412	813	29	2	1229	2	NETO2	16	47162345	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	16667115	47162345	43192408	711	64417										
ABCC12	0	genome.wustl.edu	37	chr16	48174608	48174608	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gccagcttacctcgccaacaGagatgtgggtcaatgtcttg	11	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	48174608	48174608	G	C	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.647	p.S216C	0.994	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	19	0	0	11	6	35.29	-	-	-	C	48174608	G	C	48174608	3	2	727	1	0	0	0	0	1	0	0	0	52	942	33	2	3536	2	ABCC12	16	48174608	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1012263	48174608	42180145	712	64418										
SLC6A2	0	genome.wustl.edu	37	chr16	55729244	55729244	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accagcttcgtctctgggttCgccatcttctccatccttgg	8	15	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	55729244	55729244	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	69_37n	1	known	silent	c.1077	p.F359	0.807	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546	58	0	0	17	12	41.38	-	-	-	T	55729244	C	T	55729244	2	4	727	1	0	0	0	0	0	0	0	1	14772	883	31	1		1	SLC6A2	16	55729244	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7554636	55729244	34625509	713	64419										
GFOD2	0	genome.wustl.edu	37	chr16	67709771	67709771	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcctgagtagatgcgggcatCacagatcatcaccgctccca	10	14	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	67709771	67709771	C	T	SNP	GFOD2	ENST00000268797	human	ensembl	69_37n	-1	known	missense	c.445	p.D149N	1.000	NULL	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098	44	0	0	11	4	26.67	-	-	-	T	67709771	C	T	67709771	3	4	727	1	0	0	0	0	1	0	0	0	6396	826	29	2	716	2	GFOD2	16	67709771	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	11980527	67709771	22644982	714	64420										
CDH1	0	genome.wustl.edu	37	chr16	68842438	68842439	+	Frame_Shift_Ins	INS	-	-	A													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catcagctgcccagaaaatgINSaaaaaggcccatttcctaaa							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	68842438	68842439	-	A	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.499_500	p.G169fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	52	0	0	28	10	26.32	-	-	-	A	68842439	-	A	68842438	7	5	727	1	0	1	1	0	0	0	0	0	3124	1291	45	0	513	0	CDH1	16	68842438	Frame_Shift_Ins	INS	-	TCGA-D8-A27G-01A-11D-A16D-09	1132667	68842438	21512315	715	64421										
HYDIN	0	genome.wustl.edu	37	chr16	71098709	71098709	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagtgcccaaagtccacctCtgtattgaccaggtggaggg	13	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	71098709	71098709	C	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.2110	p.E704Q	0.963	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	86	0	0	27	13	31.71	-	-	-	G	71098709	C	G	71098709	3	3	727	1	0	0	0	0	1	0	0	0	7521	922	32	2	13548	2	HYDIN	16	71098709	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2256271	71098709	19256044	716	64422										
ACSF3	0	genome.wustl.edu	37	chr16	89212355	89212355	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctatccgcagatgtggctgTgattggagttccggatatga	13	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	16	89212355	89212355	T	G	SNP	ACSF3	ENST00000317447	human	ensembl	69_37n	1	known	missense	c.1511	p.V504G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	83	0	0	36	8	17.78	-	-	-	G	89212355	T	G	89212355	3	3	727	1	0	0	0	0	1	0	0	0	176	1696	59	5	1541	5	ACSF3	16	89212355	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	18113646	89212355	1142398	717	64423										
SRR	0	genome.wustl.edu	37	chr17	2227019	2227019	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctggtgttggagtggctgCtgtgctgtctcaacattttc	13	8	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	2227019	2227019	C	G	SNP	SRR	ENST00000344595	human	ensembl	69_37n	1	known	missense	c.875	p.A292G	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors	SRR	HGNC	ENSG00000167720	105	1	0.94	51	19	27.14	-	-	-	G	2227019	C	G	2227019	3	3	727	1	0	0	0	0	1	0	0	0	15257	797	28	4	901	4	SRR	17	2227019	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		2227019	78968191	718	64424										
ZZEF1	0	genome.wustl.edu	37	chr17	4005621	4005621	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccactcaccatcccttgtCcacggttcaacaaggaggtt	7	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	4005621	4005621	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	nonsense	c.1662	p.W554*	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	45	0	0	34	16	31.37	-	-	-	T	4005621	C	T	4005621	4	4	727	1	0	0	0	0	0	1	0	0	18346	856	30	2	7411	2	ZZEF1	17	4005621	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1778602	4005621	77189589	719	64425										
ANKFY1	0	genome.wustl.edu	37	chr17	4075888	4075888	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccggcttgtccagaggataCcccggcatgcattctaggaa	11	12	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	4075888	4075888	C	A	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	silent	c.3228	p.G1076	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	59	0	0	20	4	16.67	-	-	-	A	4075888	C	A	4075888	2	1	727	1	0	0	0	0	0	0	0	1	626	494	18	4		4	ANKFY1	17	4075888	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	70267	4075888	77119322	720	64426										
CHD3	0	genome.wustl.edu	37	chr17	7809182	7809182	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcccaccctcaggtgctgggCttcaacacccgtcagcggaa	10	16	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	7809182	7809182	C	A	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	silent	c.4233	p.G1411	0.626	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	43	0	0	24	7	21.88	-	-	-	A	7809182	C	A	7809182	2	1	727	1	0	0	0	0	0	0	0	1	3355	784	28	4		4	CHD3	17	7809182	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3733294	7809182	73386028	721	64427										
MYH10	0	genome.wustl.edu	37	chr17	8424485	8424485	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agagttgccatcagcttggtGagagattctttgtagagttg	13	5	2	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	8424485	8424485	G	A	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	silent	c.2046	p.L682	0.983	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	155	0	0	77	40	33.9	-	-	-	A	8424485	G	A	8424485	2	1	727	1	0	0	0	0	0	0	0	1	10102	1277	45	2		2	MYH10	17	8424485	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	615303	8424485	72770725	722	64428										
FAM18B2	0	genome.wustl.edu	37	chr17	15406381	15406381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttccagtaaagagctcgatCcgtgatcctcgtgaaagaat	9	9	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	15406381	15406381	C	T	SNP	FAM18B2	ENST00000225576	human	ensembl	69_37n	-1	known	missense	c.628	p.D210N	0.000	NULL	pfam_DUF846_euk	-	no_errors	FAM18B2	HGNC	ENSG00000175106	48	0	0	16	11	40.74	-	-	-	T	15406381	C	T	15406381	3	4	727	1	0	0	0	0	1	0	0	0	5562	855	30	2	206	2	FAM18B2	17	15406381	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	6981896	15406381	65788829	723	64429										
ZNF286A	0	genome.wustl.edu	37	chr17	15620239	15620239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctcatccctaactaagcatCagagagttcatactggagaa	8	10	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	15620239	15620239	C	G	SNP	ZNF286A	ENST00000413242	human	ensembl	69_37n	1	known	missense	c.1201	p.Q401E	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC005324.8-001	Clone_based_vega_gene	ENSG00000255104	39	0	0	40	8	16.67	-	-	-	G	15620239	C	G	15620239	3	3	727	1	0	0	0	0	1	0	0	0	17919	827	29	2	1219	2	ZNF286A	17	15620239	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	213858	15620239	65574971	724	64430										
NCOR1	0	genome.wustl.edu	37	chr17	16075194	16075194	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaccgcagcactgacacgctGaaaatgagaatcagaaacct	8	11	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	16075194	16075194	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.358	p.Q120*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	31	0	0	25	7	21.88	-	-	-	A	16075194	G	A	16075194	4	1	727	1	0	0	0	0	0	1	0	0	10307	1299	45	2	7136	2	NCOR1	17	16075194	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	454955	16075194	65120016	725	64431										
CCDC144A	0	genome.wustl.edu	37	chr17	16612317	16612317	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaaaattccggcttgtcctGaggaagagccactacttgat	9	10	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	16612317	16612317	G	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.946	p.E316K	0.260	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	74	0	0	183	23	11.11	-	-	-	A	16612317	G	A	16612317	3	1	727	1	0	0	0	0	1	0	0	0	2802	1291	45	2	964	2	CCDC144A	17	16612317	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	537123	16612317	64582893	726	64432										
MPRIP	0	genome.wustl.edu	37	chr17	17083362	17083362	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgacttcttgaagaaagacaGatcctgtgtcacccggcaac	9	11	2	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	17083362	17083362	G	C	SNP	MPRIP	ENST00000395811	human	ensembl	69_37n	1	known	missense	c.3005	p.R1002T	1.000	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin/RR-like,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030	82	0	0	104	13	11.11	-	-	-	C	17083362	G	C	17083362	3	2	727	1	0	0	0	0	1	0	0	0	9815	942	33	2	3091	2	MPRIP	17	17083362	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	471045	17083362	64111848	727	64433										
TOP3A	0	genome.wustl.edu	37	chr17	18181268	18181268	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctcccggattggggctgtCtgcccacaggaagaagttgc	14	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	18181268	18181268	C	G	SNP	TOP3A	ENST00000321105	human	ensembl	69_37n	-1	known	missense	c.2548	p.D850H	1.000	pfam_Znf_GRF	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302	21	0	0	40	10	20	-	-	-	G	18181268	C	G	18181268	3	3	727	1	0	0	0	0	1	0	0	0	16463	913	32	2	465	2	TOP3A	17	18181268	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1097906	18181268	63013942	728	64434										
ALDH3A2	0	genome.wustl.edu	37	chr17	19576546	19576546	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggtccagtaagcagagatGaacaccagatttcaaaaccc	8	10	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	19576546	19576546	G	A	SNP	ALDH3A2	ENST00000575384	human	ensembl	69_37n	1	novel	missense	c.223	p.E75K	0.691	NULL	NULL	-	no_start_codon	ALDH3A2	HGNC	ENSG00000072210	61	0	0	33	23	41.07	-	-	-	A	19576546	G	A	19576546	3	1	727	1	0	0	0	0	1	0	0	0	498	1285	45	2	1564	2	ALDH3A2	17	19576546	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1395278	19576546	61618664	729	64435										
ULK2	0	genome.wustl.edu	37	chr17	19720149	19720149	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctactagtactggcagaatCtttggaaacttgtagatagt	10	6	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	19720149	19720149	C	G	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	missense	c.1009	p.D337H	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	73	0	0	166	20	10.75	-	-	-	G	19720149	C	G	19720149	3	3	727	1	0	0	0	0	1	0	0	0	17073	913	32	2	2161	2	ULK2	17	19720149	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	143603	19720149	61475061	730	64436										
AKAP10	0	genome.wustl.edu	37	chr17	19843048	19843048	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtcatataaaatcatggcatCattctgtgcctcctgtccat	6	11	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	19843048	19843048	C	T	SNP	AKAP10	ENST00000225737	human	ensembl	69_37n	-1	known	missense	c.1300	p.D434N	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	AKAP10	HGNC	ENSG00000108599	78	0	0	115	21	15.44	-	-	-	T	19843048	C	T	19843048	3	4	727	1	0	0	0	0	1	0	0	0	446	826	29	2	720	2	AKAP10	17	19843048	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	122899	19843048	61352162	731	64437										
LGALS9	0	genome.wustl.edu	37	chr17	25974091	25974091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accaccattctgggagggctGtacccatccaagtccatcct	8	15	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	25974091	25974091	G	A	SNP	LGALS9	ENST00000581710	human	ensembl	69_37n	1	novel	missense	c.280	p.V94I	0.993	superfamily_ConA-like_lec_gl	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LGALS9	HGNC	ENSG00000168961	102	0	0	52	21	28.77	-	-	-	A	25974091	G	A	25974091	3	1	727	1	0	0	0	0	1	0	0	0	8803	1364	48	4	739	4	LGALS9	17	25974091	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6131043	25974091	55221119	732	64438										
PIGS	0	genome.wustl.edu	37	chr17	26888531	26888531	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcagcaagcacatcctcagtCaaagacatggcctgggccac	10	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	26888531	26888531	C	G	SNP	PIGS	ENST00000308360	human	ensembl	69_37n	-1	known	missense	c.585	p.L195F	1.000	pfam_PtdIno-glycan_biosynth_class_S	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111	38	0	0	36	6	14.29	-	-	-	G	26888531	C	G	26888531	3	3	727	1	0	0	0	0	1	0	0	0	11972	825	29	2	1110	2	PIGS	17	26888531	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	914440	26888531	54306679	733	64439										
MYO18A	0	genome.wustl.edu	37	chr17	27425981	27425981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacacagcgaatggccaggtCctggatctgcaggtggggtg	16	9	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	27425981	27425981	C	G	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.3643	p.D1215H	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	118	0	0	56	22	28.21	-	-	-	G	27425981	C	G	27425981	3	3	727	1	0	0	0	0	1	0	0	0	10137	855	30	2	2601	2	MYO18A	17	27425981	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	537450	27425981	53769229	734	64440										
SYNRG	0	genome.wustl.edu	37	chr17	35902444	35902444	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acaaaggtcgttactttggaGagagatgtcatggtgatgtt	13	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	35902444	35902444	G	A	SNP	SYNRG	ENST00000339208	human	ensembl	69_37n	-1	known	silent	c.2832	p.L944	0.673	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	64	0	0	46	27	36.99	-	-	-	A	35902444	G	A	35902444	2	1	727	1	0	0	0	0	0	0	0	1	15552	929	33	2		2	SYNRG	17	35902444	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	8476463	35902444	45292766	735	64441										
PSMD3	0	genome.wustl.edu	37	chr17	38153808	38153808	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtttgccaaggagatggcaGaagatgatgatgacagcttc	13	6	0	6			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	38153808	38153808	G	T	SNP	PSMD3	ENST00000264639	human	ensembl	69_37n	1	known	nonsense	c.1579	p.E527*	1.000	pfam_26S_Psome_reg_C	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	23	0	0	23	14	37.84	-	-	-	T	38153808	G	T	38153808	4	4	727	1	0	0	0	0	0	1	0	0	12779	943	33	2	1625	2	PSMD3	17	38153808	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2251364	38153808	43041402	736	64442										
RARA	0	genome.wustl.edu	37	chr17	38506062	38506062	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttccgccgcagcatccagaaGaacatggtgtacacgtgtca	10	12	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	38506062	38506062	G	A	SNP	RARA	ENST00000254066	human	ensembl	69_37n	1	known	silent	c.354	p.K118	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARA	HGNC	ENSG00000131759	60	0	0	42	16	27.59	-	-	-	A	38506062	G	A	38506062	2	1	727	1	0	0	0	0	0	0	0	1	13135	933	33	2		2	RARA	17	38506062	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	352254	38506062	42689148	737	64443										
KRT222	0	genome.wustl.edu	37	chr17	38816249	38816249	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atttaggtacctgatttcttCtttttctaggaggtggcgat	10	6	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	38816249	38816249	C	G	SNP	KRT222	ENST00000394052	human	ensembl	69_37n	-1	known	missense	c.436	p.E146Q	1.000	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424	136	0	0	115	39	25.16	-	-	-	G	38816249	C	G	38816249	3	3	727	1	0	0	0	0	1	0	0	0	8512	922	32	2	467	2	KRT222	17	38816249	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	310187	38816249	42378961	738	64444										
KRT24	0	genome.wustl.edu	37	chr17	38859392	38859392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatctcttcccgatccaccgTctccagacccaggcccatat	5	18	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	38859392	38859392	T	A	SNP	KRT24	ENST00000264651	human	ensembl	69_37n	-1	known	missense	c.554	p.D185V	0.003	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916	105	0	0	91	21	18.75	-	-	-	A	38859392	T	A	38859392	3	1	727	1	0	0	0	0	1	0	0	0	8514	1667	58	5	1055	5	KRT24	17	38859392	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	43143	38859392	42335818	739	64445										
KRTAP9-8	0	genome.wustl.edu	37	chr17	39394360	39394360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgctgcaggaccacctgctgGaagcccaccactgtgaccac	10	16	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	39394360	39394360	G	C	SNP	KRTAP9-8	ENST00000254072	human	ensembl	69_37n	1	known	missense	c.57	p.W19C	0.012	NULL	NULL	-	no_errors	KRTAP9-8	HGNC	ENSG00000187272	130	0	0	73	15	17.05	-	-	-	C	39394360	G	C	39394360	3	2	727	1	0	0	0	0	1	0	0	0	8630	1183	41	2	59	2	KRTAP9-8	17	39394360	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	534968	39394360	41800850	740	64446										
RUNDC1	0	genome.wustl.edu	37	chr17	41143047	41143047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcccttgctgaagaggctgGaggtgtcagtggacagagtg	16	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	41143047	41143047	G	A	SNP	RUNDC1	ENST00000361677	human	ensembl	69_37n	1	known	missense	c.1156	p.E386K	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863	26	0	0	16	6	27.27	-	-	-	A	41143047	G	A	41143047	3	1	727	1	0	0	0	0	1	0	0	0	13828	1175	41	2	1174	2	RUNDC1	17	41143047	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1748687	41143047	40052163	741	64447										
RUNDC1	0	genome.wustl.edu	37	chr17	41143193	41143193	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaggagctaacggtggctgtGagggacctgctggcccatgg	17	9	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	41143193	41143193	G	A	SNP	RUNDC1	ENST00000361677	human	ensembl	69_37n	1	known	silent	c.1302	p.V434	0.998	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863	37	0	0	12	8	40	-	-	-	A	41143193	G	A	41143193	2	1	727	1	0	0	0	0	0	0	0	1	13828	1277	45	2		2	RUNDC1	17	41143193	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	146	41143193	40052017	742	64448										
MAPT	0	genome.wustl.edu	37	chr17	44051778	44051778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcacccttagtggatgaggGagctcccggcaagcaggctg	15	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	44051778	44051778	G	A	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	missense	c.248	p.G83E	0.095	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	24	0	0	20	7	25.93	-	-	-	A	44051778	G	A	44051778	3	1	727	1	0	0	0	0	1	0	0	0	9368	1174	41	2	258	2	MAPT	17	44051778	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2908585	44051778	37143432	743	64449										
OSBPL7	0	genome.wustl.edu	37	chr17	45893814	45893814	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agttggtcccgttccatggtGagggcggccaggacgctgct	16	11	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	45893814	45893814	G	A	SNP	OSBPL7	ENST00000007414	human	ensembl	69_37n	-1	known	silent	c.963	p.L321	0.998	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL7	HGNC	ENSG00000006025	46	0	0	44	8	15.38	-	-	-	A	45893814	G	A	45893814	2	1	727	1	0	0	0	0	0	0	0	1	11355	1277	45	2		2	OSBPL7	17	45893814	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1842036	45893814	35301396	744	64450										
TTLL6	0	genome.wustl.edu	37	chr17	46863601	46863601	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccctcatgcccttctttctCacttgctcgcctgccgattc	5	19	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	46863601	46863601	C	G	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	silent	c.1686	p.V562	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	246	0	0	208	46	18.11	-	-	-	G	46863601	C	G	46863601	2	3	727	1	0	0	0	0	0	0	0	1	16828	813	29	2		2	TTLL6	17	46863601	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	969787	46863601	34331609	745	64451										
MYCBPAP	0	genome.wustl.edu	37	chr17	48597009	48597009	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttccttgccagagctgggaGaacagtgggttctggagtcg	15	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	48597009	48597009	G	A	SNP	MYCBPAP	ENST00000437498	human	ensembl	69_37n	1	known	missense	c.830	p.R277K	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYCBPAP	HGNC	ENSG00000136449	38	0	0	67	13	16.25	-	-	-	A	48597009	G	A	48597009	3	1	727	1	0	0	0	0	1	0	0	0	10091	933	33	2	932	2	MYCBPAP	17	48597009	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1733408	48597009	32598201	746	64452										
ANKRD40	0	genome.wustl.edu	37	chr17	48776873	48776873	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggtggcttggacgggacaGaagaaaacagggagcggctc	17	7	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	48776873	48776873	G	A	SNP	ANKRD40	ENST00000285243	human	ensembl	69_37n	-1	known	missense	c.665	p.S222F	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	79	0	0	117	17	12.69	-	-	-	A	48776873	G	A	48776873	3	1	727	1	0	0	0	0	1	0	0	0	668	942	33	2	453	2	ANKRD40	17	48776873	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	179864	48776873	32418337	747	64453										
ANKFN1	0	genome.wustl.edu	37	chr17	54526461	54526461	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctggaaagactatgacgacaGagagcccagacacaagggac	12	10	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	54526461	54526461	G	A	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.1130	p.R377K	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	68	0	0	83	20	19.42	-	-	-	A	54526461	G	A	54526461	3	1	727	1	0	0	0	0	1	0	0	0	625	942	33	2	1168	2	ANKFN1	17	54526461	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5749588	54526461	26668749	748	64454										
RPS6KB1	0	genome.wustl.edu	37	chr17	57970672	57970672	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggacgcgggctctgaggatGagctggaggagggggtgagg	23	5	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	57970672	57970672	G	A	SNP	RPS6KB1	ENST00000225577	human	ensembl	69_37n	1	known	missense	c.127	p.E43K	1.000	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443	38	0	0	48	9	15.79	-	-	-	A	57970672	G	A	57970672	3	1	727	1	0	0	0	0	1	0	0	0	13742	1291	45	2	129	2	RPS6KB1	17	57970672	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3444211	57970672	23224538	749	64455										
MED13	0	genome.wustl.edu	37	chr17	60062382	60062382	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatgcaagataacgggtccaGatttcctgtctttgattcct	8	9	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	60062382	60062382	G	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	silent	c.2455	p.L819	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	154	0	0	308	39	11.21	-	-	-	A	60062382	G	A	60062382	2	1	727	1	0	0	0	0	0	0	0	1	9501	933	33	2		2	MED13	17	60062382	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2091710	60062382	21132828	750	64456										
METTL2A	0	genome.wustl.edu	37	chr17	60518038	60518038	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcacgacctgtgtgatgaaGagaagagttacccagtgccc	11	10	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	60518038	60518038	G	C	SNP	METTL2A	ENST00000311506	human	ensembl	69_37n	1	known	missense	c.730	p.E244Q	0.838	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2A	HGNC	ENSG00000087995	208	0	0	376	58	13.36	-	-	-	C	60518038	G	C	60518038	3	2	727	1	0	0	0	0	1	0	0	0	9570	943	33	2	752	2	METTL2A	17	60518038	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	455656	60518038	20677172	751	64457										
ACE	0	genome.wustl.edu	37	chr17	61570849	61570849	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acctggtggtggcccaccacGaaatgggccacatccagtat	11	13	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	61570849	61570849	G	C	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.2965	p.E989Q	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	46	0	0	51	12	19.05	-	-	-	C	61570849	G	C	61570849	3	2	727	1	0	0	0	0	1	0	0	0	136	1059	37	3	3246	3	ACE	17	61570849	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1052811	61570849	19624361	752	64458										
CCDC47	0	genome.wustl.edu	37	chr17	61829734	61829734	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atagaataaatcaccatgttCatcaggggtagcagtgcctc	9	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	61829734	61829734	C	A	SNP	CCDC47	ENST00000225726	human	ensembl	69_37n	-1	known	missense	c.1149	p.M383I	1.000	pfam_DUF1682	pfam_DUF1682	-	no_errors	CCDC47	HGNC	ENSG00000108588	65	0	0	58	14	19.44	-	-	-	A	61829734	C	A	61829734	3	1	727	1	0	0	0	0	1	0	0	0	2845	826	29	2	314	2	CCDC47	17	61829734	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	258885	61829734	19365476	753	64459										
DDX42	0	genome.wustl.edu	37	chr17	61864561	61864561	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcttctggatttggaaagtCagctccaccacagcttcctt	7	12	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	61864561	61864561	C	G	SNP	DDX42	ENST00000389924	human	ensembl	69_37n	1	known	nonsense	c.152	p.S51*	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231	113	0	0	175	41	18.89	-	-	-	G	61864561	C	G	61864561	4	3	727	1	0	0	0	0	0	1	0	0	4393	838	29	2	154	2	DDX42	17	61864561	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	34827	61864561	19330649	754	64460										
DDX42	0	genome.wustl.edu	37	chr17	61876968	61876968	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggggtattcgagatgacattGaagaggaagatgaccaagtg	15	4	0	6			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	61876968	61876968	G	A	SNP	DDX42	ENST00000389924	human	ensembl	69_37n	1	known	missense	c.454	p.E152K	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231	121	0	0	209	42	16.67	-	-	-	A	61876968	G	A	61876968	3	1	727	1	0	0	0	0	1	0	0	0	4393	1291	45	2	468	2	DDX42	17	61876968	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	12407	61876968	19318242	755	64461										
POLG2	0	genome.wustl.edu	37	chr17	62492750	62492750	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccaccgaggtccaccattCtgcggccaggttcttccgca	9	17	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	62492750	62492750	C	A	SNP	POLG2	ENST00000539111	human	ensembl	69_37n	-1	known	nonsense	c.337	p.E113*	0.958	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525	33	0	0	32	6	15.79	-	-	-	A	62492750	C	A	62492750	4	1	727	1	0	0	0	0	0	1	0	0	12275	922	32	2	1152	2	POLG2	17	62492750	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	615782	62492750	18702460	756	64462										
HELZ	0	genome.wustl.edu	37	chr17	65147231	65147231	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaccaccactcgatgtttaaGaatatcttctttctggggca	7	10	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	65147231	65147231	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.2287	p.L763F	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	78	0	0	111	19	14.62	-	-	-	A	65147231	G	A	65147231	3	1	727	1	0	0	0	0	1	0	0	0	7100	942	33	2	3605	2	HELZ	17	65147231	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2654481	65147231	16047979	757	64463										
BPTF	0	genome.wustl.edu	37	chr17	65850193	65850193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaatgtcattgccatttacGaggtactgcggaactttggc	11	8	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	65850193	65850193	G	A	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.751	p.E251K	1.000	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	110	0	0	157	28	15.14	-	-	-	A	65850193	G	A	65850193	3	1	727	1	0	0	0	0	1	0	0	0	1503	1059	37	1	757	1	BPTF	17	65850193	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	702962	65850193	15345017	758	64464										
AMZ2	0	genome.wustl.edu	37	chr17	66246373	66246373	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagacactaaaaacagctctCatctcaaagaacccagtgct	5	13	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	66246373	66246373	C	T	SNP	AMZ2	ENST00000359904	human	ensembl	69_37n	1	known	silent	c.45	p.L15	1.000	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ2	HGNC	ENSG00000196704	63	0	0	71	9	11.11	-	-	-	T	66246373	C	T	66246373	2	4	727	1	0	0	0	0	0	0	0	1	597	813	29	2		2	AMZ2	17	66246373	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	396180	66246373	14948837	759	64465										
SLC16A6	0	genome.wustl.edu	37	chr17	66267692	66267692	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacgctggtcctctgataaaGatgggtctgagcagtgctcc	13	10	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	66267692	66267692	G	T	SNP	SLC16A6	ENST00000327268	human	ensembl	69_37n	-1	known	silent	c.609	p.I203	0.001	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932	65	0	0	85	20	19.05	-	-	-	T	66267692	G	T	66267692	2	4	727	1	0	0	0	0	0	0	0	1	14501	932	33	2		2	SLC16A6	17	66267692	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	21319	66267692	14927518	760	64466										
ARSG	0	genome.wustl.edu	37	chr17	66339821	66339821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaccggccggcttggccttCgcaatggagtcacacgcaac	11	15	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	66339821	66339821	C	T	SNP	ARSG	ENST00000448504	human	ensembl	69_37n	1	known	missense	c.295	p.R99C	0.972	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337	49	0	0	40	5	10.87	-	-	-	T	66339821	C	T	66339821	3	4	727	1	0	0	0	0	1	0	0	0	996	884	31	1	301	1	ARSG	17	66339821	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	72129	66339821	14855389	761	64467										
ABCA6	0	genome.wustl.edu	37	chr17	67083529	67083529	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtggtcagagcagtggctgTtcttattctttctgtttgaa	11	6	4	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	67083529	67083529	T	G	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.3784	p.T1262P	0.985	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	273	0	0	197	33	14.29	-	-	-	G	67083529	T	G	67083529	3	3	727	1	0	0	0	0	1	0	0	0	36	1725	60	5	1113	5	ABCA6	17	67083529	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	743708	67083529	14111681	762	64468										
ABCA10	0	genome.wustl.edu	37	chr17	67186589	67186589	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ataattccttatgccctggtCagaacacttatcaaggtcac	6	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	67186589	67186589	C	T	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.2041	p.D681N	0.001	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	103	0	0	88	12	12	-	-	-	T	67186589	C	T	67186589	3	4	727	1	0	0	0	0	1	0	0	0	29	826	29	2	2678	2	ABCA10	17	67186589	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	103060	67186589	14008621	763	64469										
ABCA10	0	genome.wustl.edu	37	chr17	67189676	67189676	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atccctagtgttagttttctCttctgcccaccacttaattt	4	12	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	67189676	67189676	C	G	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1599	p.K533N	0.997	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	131	0	0	95	35	26.72	-	-	-	G	67189676	C	G	67189676	3	3	727	1	0	0	0	0	1	0	0	0	29	912	32	2	3136	2	ABCA10	17	67189676	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3087	67189676	14005534	764	64470										
ABCA5	0	genome.wustl.edu	37	chr17	67293342	67293342	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaaccataccttatggcttCttttcctacaaattctgaag	5	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	67293342	67293342	C	T	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.1426	p.E476K	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	74	0	0	53	14	20.9	-	-	-	T	67293342	C	T	67293342	3	4	727	1	0	0	0	0	1	0	0	0	35	922	32	2	3622	2	ABCA5	17	67293342	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	103666	67293342	13901868	765	64471										
CDC42EP4	0	genome.wustl.edu	37	chr17	71282177	71282177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcctccgtgcccgcctcctCatcgccgccctccccgtcat	6	24	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	71282177	71282177	C	G	SNP	CDC42EP4	ENST00000335793	human	ensembl	69_37n	-1	known	missense	c.463	p.E155Q	0.394	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP4	HGNC	ENSG00000179604	18	0	0	10	4	28.57	-	-	-	G	71282177	C	G	71282177	3	3	727	1	0	0	0	0	1	0	0	0	3107	835	29	2	611	2	CDC42EP4	17	71282177	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3988835	71282177	9913033	766	64472										
TRIM47	0	genome.wustl.edu	37	chr17	73872388	73872388	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagggacctggctgagattCtggcgggctcggctcaggcg	17	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	73872388	73872388	C	G	SNP	TRIM47	ENST00000254816	human	ensembl	69_37n	-1	known	missense	c.957	p.Q319H	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM47	HGNC	ENSG00000132481	24	0	0	5	6	54.55	-	-	-	G	73872388	C	G	73872388	3	3	727	1	0	0	0	0	1	0	0	0	16618	912	32	2	975	2	TRIM47	17	73872388	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2590211	73872388	7322822	767	64473										
EXOC7	0	genome.wustl.edu	37	chr17	74084200	74084200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttgtactccttgtccgggtCattctgtggaaaaacagcct	10	10	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	74084200	74084200	C	T	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.1456	p.D486N	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	30	0	0	21	8	27.59	-	-	-	T	74084200	C	T	74084200	3	4	727	1	0	0	0	0	1	0	0	0	5346	826	29	2	787	2	EXOC7	17	74084200	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	211812	74084200	7111010	768	64474										
RNF213	0	genome.wustl.edu	37	chr17	78280205	78280205	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggtcgttttcctgctcatatCctggactgtctttcagggat	10	10	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	78280205	78280205	C	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.2364	p.I788	0.782	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	92	0	0	66	28	29.79	-	-	-	T	78280205	C	T	78280205	2	4	727	1	0	0	0	0	0	0	0	1	13563	845	30	2		2	RNF213	17	78280205	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4196005	78280205	2915005	769	64475										
ASPSCR1	0	genome.wustl.edu	37	chr17	79966993	79966993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cggctgcaggcctggccagcGgagctgcctgatgagttctt	15	12	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	79966993	79966993	G	A	SNP	ASPSCR1	ENST00000583503	human	ensembl	69_37n	1	known	missense	c.455	p.R152Q	0.005	NULL	pfam_TUG	-	no_errors	ASPSCR1	HGNC	ENSG00000169696	24	0	0	8	4	33.33	-	-	-	A	79966993	G	A	79966993	3	1	727	1	0	0	0	0	1	0	0	0	1063	1103	39	1	1044	1	ASPSCR1	17	79966993	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1686788	79966993	1228217	770	64476										
FASN	0	genome.wustl.edu	37	chr17	80053314	80053314	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaaacctagacaggtccttCagcttgccggaccgccgggg	12	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	80053314	80053314	C	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	silent	c.162	p.L54	0.999	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	35	0	0	16	6	27.27	-	-	-	T	80053314	C	T	80053314	2	4	727	1	0	0	0	0	0	0	0	1	5729	813	29	2		2	FASN	17	80053314	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	86321	80053314	1141896	771	64477										
HEXDC	0	genome.wustl.edu	37	chr17	80386446	80386446	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctccagcccctctgaaatCaaagagatcttgcatctggc	7	14	5	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	17	80386446	80386446	C	G	SNP	HEXDC	ENST00000578775	human	ensembl	69_37n	1	known	nonsense	c.188	p.S63*	0.049	NULL	NULL	-	no_start_codon	HEXDC	HGNC	ENSG00000169660	83	0	0	58	7	10.77	-	-	-	G	80386446	C	G	80386446	4	3	727	1	0	0	0	0	0	1	0	0	7126	816	29	2	217	2	HEXDC	17	80386446	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	333132	80386446	808764	772	64478										
SMCHD1	0	genome.wustl.edu	37	chr18	2666919	2666919	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acctgctacagtcggtcaatCagttactactgacagctacg	8	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	2666919	2666919	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	nonsense	c.313	p.Q105*	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	45	0	0	40	10	20	-	-	-	T	2666919	C	T	2666919	4	4	727	1	0	0	0	0	0	1	0	0	14877	827	29	2	323	2	SMCHD1	18	2666919	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		2666919	75410329	773	64479										
MYOM1	0	genome.wustl.edu	37	chr18	3094176	3094176	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtaaaacctaccgggccttCaaaaatttccttctcgttaa	5	11	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	3094176	3094176	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.3856	p.E1286K	1.000	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	96	0	0	59	25	29.76	-	-	-	T	3094176	C	T	3094176	3	4	727	1	0	0	0	0	1	0	0	0	10163	835	29	2	1253	2	MYOM1	18	3094176	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	427257	3094176	74983072	774	64480										
LAMA1	0	genome.wustl.edu	37	chr18	6965413	6965413	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cactctgccacgaaacagctCgatggataaaaagtctttct	7	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	6965413	6965413	C	G	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.7069	p.E2357Q	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	62	0	0	42	13	23.64	-	-	-	G	6965413	C	G	6965413	3	3	727	1	0	0	0	0	1	0	0	0	8659	893	31	3	2214	3	LAMA1	18	6965413	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3871237	6965413	71111835	775	64481										
RNMT	0	genome.wustl.edu	37	chr18	13742650	13742650	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctattttccattgctaaatGagtaagaagtcattaatctg	6	6	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	13742650	13742650	G	A	SNP	RNMT	ENST00000262173	human	ensembl	69_37n	1	known	missense	c.1138	p.E380K	1.000	pfam_Pox_MCEL,pirsf_mRNA_G-N7_MeTrfase	pfam_Pox_MCEL,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654	154	0	0	95	40	29.63	-	-	-	A	13742650	G	A	13742650	3	1	727	1	0	0	0	0	1	0	0	0	13592	1304	45	2	1160	2	RNMT	18	13742650	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6777237	13742650	64334598	776	64482										
CABLES1	0	genome.wustl.edu	37	chr18	20817196	20817196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acacaaacgcgttctgatctTcccttcctacatggtgagta	7	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	20817196	20817196	T	C	SNP	CABLES1	ENST00000256925	human	ensembl	69_37n	1	known	missense	c.1433	p.F478S	1.000	superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508	101	0	0	76	16	17.2	-	-	-	C	20817196	T	C	20817196	3	2	727	1	0	0	0	0	1	0	0	0	2554	1783	62	5	1513	5	CABLES1	18	20817196	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	7074546	20817196	57260052	777	64483										
TAF4B	0	genome.wustl.edu	37	chr18	23866325	23866325	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctatttgtcttccatctgtGaaacctgttgtttcttctgc	7	10	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	23866325	23866325	G	A	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	silent	c.1452	p.V484	0.468	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	47	0	0	38	19	33.33	-	-	-	A	23866325	G	A	23866325	2	1	727	1	0	0	0	0	0	0	0	1	15619	1277	45	2		2	TAF4B	18	23866325	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3049129	23866325	54210923	778	64484										
TAF4B	0	genome.wustl.edu	37	chr18	23901147	23901147	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgactgcaattgctcagcatCgaatgactacttacaaggta	8	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	23901147	23901147	C	T	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	1	known	nonsense	c.2116	p.R706*	0.997	pfam_TAF4	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	33	0	0	31	11	25.58	-	-	-	T	23901147	C	T	23901147	4	4	727	1	0	0	0	0	0	1	0	0	15619	876	31	1	2158	1	TAF4B	18	23901147	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	34822	23901147	54176101	779	64485										
GALNT1	0	genome.wustl.edu	37	chr18	33243615	33243615	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagagccagtacaaaagcctCatgaaggtcctggagaaatg	11	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	33243615	33243615	C	T	SNP	GALNT1	ENST00000269195	human	ensembl	69_37n	1	known	missense	c.163	p.H55Y	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429	61	0	0	62	19	23.46	-	-	-	T	33243615	C	T	33243615	3	4	727	1	0	0	0	0	1	0	0	0	6257	826	29	2	169	2	GALNT1	18	33243615	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	9342468	33243615	44833633	780	64486										
SLC14A1	0	genome.wustl.edu	37	chr18	43314269	43314269	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcatctgggctctatggctaCaatgccaccctggtgggagt	13	11	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	43314269	43314269	C	A	SNP	SLC14A1	ENST00000415427	human	ensembl	69_37n	1	known	nonsense	c.540	p.Y180*	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469	141	0	0	95	24	20.17	-	-	-	A	43314269	C	A	43314269	4	1	727	1	0	0	0	0	0	1	0	0	14485	489	17	4	554	4	SLC14A1	18	43314269	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	10070654	43314269	34762979	781	64487										
SMAD2	0	genome.wustl.edu	37	chr18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgaagctttatgacatgcttGagcaacgcactgaaggggat	12	7	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	45368211	45368211	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	nonsense	c.1391	p.S464*	1.000	pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	81	0	0	56	23	29.11	-	-	-	C	45368211	G	C	45368211	4	2	727	1	0	0	0	0	0	1	0	0	14847	1294	45	2	16	2	SMAD2	18	45368211	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2053942	45368211	32709037	782	64488										
TCF4	0	genome.wustl.edu	37	chr18	53252513	53252513	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agaaaagaatttacatacttGagccagtaaaatgtccactt	6	7	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	53252513	53252513	G	A	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.449	p.S150L	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	65	0	0	32	9	21.95	-	-	-	A	53252513	G	A	53252513	3	1	727	1	0	0	0	0	1	0	0	0	15790	1294	45	2	1940	2	TCF4	18	53252513	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7884302	53252513	24824735	783	64489										
PHLPP1	0	genome.wustl.edu	37	chr18	60384485	60384485	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attggctgcctcatccgcttCtatgcaggtaaggaagtcac	10	11	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	60384485	60384485	C	G	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	missense	c.1569	p.F523L	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	64	0	0	17	14	43.75	-	-	-	G	60384485	C	G	60384485	3	3	727	1	0	0	0	0	1	0	0	0	11928	912	32	2	1571	2	PHLPP1	18	60384485	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7131972	60384485	17692763	784	64490										
TSHZ1	0	genome.wustl.edu	37	chr18	72999858	72999858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gattcggtggcatcacctctGcgggagagcgcactcatgga	14	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	72999858	72999858	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	silent	c.2496	p.L832	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	29	0	0	9	6	40	-	-	-	A	72999858	G	A	72999858	2	1	727	1	0	0	0	0	0	0	0	1	16719	1306	46	4		4	TSHZ1	18	72999858	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	12615373	72999858	5077390	785	64491										
ZNF236	0	genome.wustl.edu	37	chr18	74620457	74620457	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccatgctggacctggagcctCagcatgtggtgggcacggag	16	11	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	74620457	74620457	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	69_37n	1	known	nonsense	c.2473	p.Q825*	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	24	0	0	14	12	46.15	-	-	-	T	74620457	C	T	74620457	4	4	727	1	0	0	0	0	0	1	0	0	17885	827	29	2	2527	2	ZNF236	18	74620457	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1620599	74620457	3456791	786	64492										
TXNL4A	0	genome.wustl.edu	37	chr18	77737612	77737612	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acgtacctgaagaaaaacatGacagtacatggatcgtataa	8	7	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	18	77737612	77737612	G	A	SNP	TXNL4A	ENST00000269601	human	ensembl	69_37n	-1	known	silent	c.243	p.V81	1.000	pfam_mRNA_splic_U5,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	pfam_mRNA_splic_U5,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	-	no_errors	TXNL4A	HGNC	ENSG00000141759	65	0	0	46	12	20.69	-	-	-	A	77737612	G	A	77737612	2	1	727	1	0	0	0	0	0	0	0	1	16902	1277	45	2		2	TXNL4A	18	77737612	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3117155	77737612	339636	787	64493										
TJP3	0	genome.wustl.edu	37	chr19	3744005	3744005	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctatgcagaagttgactgctGagatgcctgaccagtttgaa	11	8	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	3744005	3744005	G	C	SNP	TJP3	ENST00000262968	human	ensembl	69_37n	1	known	missense	c.2011	p.E671Q	0.999	smart_Guanylate_kin/L-typ_Ca_channel	pfam_PDZ,pfam_SH3_2,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	78	0	0	74	9	10.84	-	-	-	C	3744005	G	C	3744005	3	2	727	1	0	0	0	0	1	0	0	0	16026	1291	45	2	2065	2	TJP3	19	3744005	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		3744005	55384978	788	64494										
CHAF1A	0	genome.wustl.edu	37	chr19	4422727	4422727	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gagaagcgggagaaggatgaGaaggagaaggcggagaagca	20	3	0	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	4422727	4422727	G	C	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	missense	c.1182	p.E394D	0.997	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	104	0	0	55	26	31.71	-	-	-	C	4422727	G	C	4422727	3	2	727	1	0	0	0	0	1	0	0	0	3340	933	33	2	1200	2	CHAF1A	19	4422727	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	678722	4422727	54706256	789	64495										
C19orf45	0	genome.wustl.edu	37	chr19	7570273	7570273	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atccgtcctggtgacggcctCttccgcgacaggaccaccaa	10	16	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	7570273	7570273	C	T	SNP	C19orf45	ENST00000361664	human	ensembl	69_37n	1	known	silent	c.846	p.L282	0.244	NULL	NULL	-	no_errors	C19orf45	HGNC	ENSG00000198723	29	0	0	14	9	37.5	-	-	-	T	7570273	C	T	7570273	2	4	727	1	0	0	0	0	0	0	0	1	1946	900	32	2		2	C19orf45	19	7570273	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3147546	7570273	51558710	790	64496										
MCOLN1	0	genome.wustl.edu	37	chr19	7589965	7589965	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgtctcaaatactttttcatGagtccctgcgacaagtttcg	7	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	7589965	7589965	G	A	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.150	p.M50I	1.000	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	26	0	0	30	5	14.29	-	-	-	A	7589965	G	A	7589965	3	1	727	1	0	0	0	0	1	0	0	0	9466	1290	45	2	156	2	MCOLN1	19	7589965	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	19692	7589965	51539018	791	64497										
TIMM44	0	genome.wustl.edu	37	chr19	7993025	7993025	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccagtgccttggcctgctgGatggggtgggccagctggct	17	12	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	7993025	7993025	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	silent	c.1065	p.I355	1.000	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	75	0	0	22	5	18.52	-	-	-	A	7993025	G	A	7993025	2	1	727	1	0	0	0	0	0	0	0	1	16007	1164	41	2		2	TIMM44	19	7993025	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	403060	7993025	51135958	792	64498										
MUC16	0	genome.wustl.edu	37	chr19	9046789	9046789	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtagttggaacacctgacctCgtgtctactccaggactggt	11	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	9046789	9046789	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.34842	p.T11614	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	100	0	0	67	26	27.66	-	-	-	G	9046789	C	G	9046789	2	3	727	1	0	0	0	0	0	0	0	1	10045	871	31	3		3	MUC16	19	9046789	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1053764	9046789	50082194	793	64499										
MUC16	0	genome.wustl.edu	37	chr19	9063096	9063096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagtccaagggtcagggagGatgttggttctgtctgaatt	14	6	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	9063096	9063096	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.24350	p.S8117F	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	85	0	0	75	19	20.21	-	-	-	A	9063096	G	A	9063096	3	1	727	1	0	0	0	0	1	0	0	0	10045	1174	41	2	19501	2	MUC16	19	9063096	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	16307	9063096	50065887	794	64500										
MUC16	0	genome.wustl.edu	37	chr19	9068489	9068489	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatgggtctgagtcaggtgaGacagtaaaatagaattcatt	11	4	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	9068489	9068489	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.18957	p.V6319	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	122	0	0	100	38	27.54	-	-	-	A	9068489	G	A	9068489	2	1	727	1	0	0	0	0	0	0	0	1	10045	929	33	2		2	MUC16	19	9068489	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5393	9068489	50060494	795	64501										
ZNF559	0	genome.wustl.edu	37	chr19	9452833	9452833	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgtacacatgcaaactcaaGatggagaaaaattctatgaa	7	6	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	9452833	9452833	G	C	SNP	ZNF559	ENST00000393883	human	ensembl	69_37n	1	known	missense	c.706	p.D236H	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321	53	0	0	45	8	14.81	-	-	-	C	9452833	G	C	9452833	3	2	727	1	0	0	0	0	1	0	0	0	18086	942	33	2	720	2	ZNF559	19	9452833	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	384344	9452833	49676150	796	64502										
CARM1	0	genome.wustl.edu	37	chr19	11031748	11031748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgccgaccgcctatgacttGagcagtgttattgccagtgg	12	10	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	11031748	11031748	G	C	SNP	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	missense	c.1560	p.L520F	1.000	NULL	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	38	0	0	28	6	17.65	-	-	-	C	11031748	G	C	11031748	3	2	727	1	0	0	0	0	1	0	0	0	2680	1281	45	2	1614	2	CARM1	19	11031748	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1578915	11031748	48097235	797	64503										
ZNF823	0	genome.wustl.edu	37	chr19	11832709	11832709	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtttctctccagtgtgaattCtttcatgtcgtagaaggcaa	9	8	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	11832709	11832709	C	T	SNP	ZNF823	ENST00000341191	human	ensembl	69_37n	-1	known	missense	c.1640	p.R547K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933	86	0	0	68	32	32	-	-	-	T	11832709	C	T	11832709	3	4	727	1	0	0	0	0	1	0	0	0	18272	913	32	2	196	2	ZNF823	19	11832709	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	800961	11832709	47296274	798	64504										
ZNF700	0	genome.wustl.edu	37	chr19	12060404	12060404	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggcttttattctgccaagtCatttcaaacacatgaaaaaa	5	8	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	12060404	12060404	C	T	SNP	ZNF700	ENST00000254321	human	ensembl	69_37n	1	known	missense	c.1565	p.S522L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757	50	0	0	36	17	32.08	-	-	-	T	12060404	C	T	12060404	3	4	727	1	0	0	0	0	1	0	0	0	18200	838	29	2	1579	2	ZNF700	19	12060404	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	227695	12060404	47068579	799	64505										
TRMT1	0	genome.wustl.edu	37	chr19	13216367	13216367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctggaagcgcttgagtcctCgctgtcgggagctggggttg	17	10	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	13216367	13216367	C	T	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.1637	p.R546Q	1.000	NULL	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	43	0	0	17	6	26.09	-	-	-	T	13216367	C	T	13216367	3	4	727	1	0	0	0	0	1	0	0	0	16657	884	31	1	354	1	TRMT1	19	13216367	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1155963	13216367	45912616	800	64506										
OR1I1	0	genome.wustl.edu	37	chr19	15198731	15198731	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggggtgttcatccccatgctCaacccctttatctacagcat	7	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	15198731	15198731	C	G	SNP	OR1I1	ENST00000209540	human	ensembl	69_37n	1	known	silent	c.855	p.L285	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1I1	HGNC	ENSG00000094661	50	0	0	31	11	26.19	-	-	-	G	15198731	C	G	15198731	2	3	727	1	0	0	0	0	0	0	0	1	11031	813	29	2		2	OR1I1	19	15198731	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1982364	15198731	43930252	801	64507										
CALR3	0	genome.wustl.edu	37	chr19	16593368	16593368	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtggagccagacgtctttatGaataccttctggtttcaggc	11	9	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	16593368	16593368	G	A	SNP	CALR3	ENST00000269881	human	ensembl	69_37n	-1	known	missense	c.811	p.H271Y	0.004	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000141979	73	0	0	56	10	15.15	-	-	-	A	16593368	G	A	16593368	3	1	727	1	0	0	0	0	1	0	0	0	2618	1290	45	2	355	2	CALR3	19	16593368	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1394637	16593368	42535615	802	64508										
MYO9B	0	genome.wustl.edu	37	chr19	17313011	17313011	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcgtcagcaacctggccactGagcgtggccagaaggacacc	12	14	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	17313011	17313011	G	A	SNP	MYO9B	ENST00000397274	human	ensembl	69_37n	1	known	missense	c.4735	p.E1579K	0.874	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	23	0	0	12	5	29.41	-	-	-	A	17313011	G	A	17313011	3	1	727	1	0	0	0	0	1	0	0	0	10157	1291	45	2	4841	2	MYO9B	19	17313011	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	719643	17313011	41815972	803	64509										
GTPBP3	0	genome.wustl.edu	37	chr19	17449538	17449538	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctgccgtggctgggccgaGaccctcaccaaagcaagtcc	11	16	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	17449538	17449538	G	C	SNP	GTPBP3	ENST00000358792	human	ensembl	69_37n	1	known	missense	c.579	p.E193D	0.165	NULL	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299	40	0	0	10	5	33.33	-	-	-	C	17449538	G	C	17449538	3	2	727	1	0	0	0	0	1	0	0	0	6932	933	33	2	593	2	GTPBP3	19	17449538	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	136527	17449538	41679445	804	64510										
JAK3	0	genome.wustl.edu	37	chr19	17950341	17950341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	actgccaccccatctacgtgCagccccccatcccagcaggt	7	20	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	17950341	17950341	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	silent	c.1386	p.L462	0.175	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	26	0	0	21	6	22.22	-	-	-	T	17950341	C	T	17950341	2	4	727	1	0	0	0	0	0	0	0	1	7993	697	25	4		4	JAK3	19	17950341	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	500803	17950341	41178642	805	64511										
ZNF486	0	genome.wustl.edu	37	chr19	20307957	20307957	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatggacttaaccaatgtttGacaactacccagagcaaaat	6	9	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	20307957	20307957	G	C	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	1	known	missense	c.438	p.L146F	0.978	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	95	0	0	98	14	12.5	-	-	-	C	20307957	G	C	20307957	3	2	727	1	0	0	0	0	1	0	0	0	18035	1281	45	2	452	2	ZNF486	19	20307957	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2357616	20307957	38821026	806	64512										
ZNF85	0	genome.wustl.edu	37	chr19	21132571	21132571	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcaacccttactaaacataaGataattcatactggagagaa	5	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	21132571	21132571	G	C	SNP	ZNF85	ENST00000328178	human	ensembl	69_37n	1	known	missense	c.1251	p.K417N	0.597	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750	33	0	0	34	14	29.17	-	-	-	C	21132571	G	C	21132571	3	2	727	1	0	0	0	0	1	0	0	0	18286	933	33	2	1265	2	ZNF85	19	21132571	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	824614	21132571	37996412	807	64513										
ZNF43	0	genome.wustl.edu	37	chr19	21990526	21990526	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtaaggtttgaatattggttGaaagctttgccacattcttt	9	5	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	21990526	21990526	G	T	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.2313	p.F771L	0.819	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	86	0	0	95	11	10.38	-	-	-	T	21990526	G	T	21990526	3	4	727	1	0	0	0	0	1	0	0	0	17999	1281	45	2	120	2	ZNF43	19	21990526	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	857955	21990526	37138457	808	64514										
ZNF208	0	genome.wustl.edu	37	chr19	22155976	22155976	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtgtagtaagggttgagacCttactaaaggttttgccaca	11	6	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	22155976	22155976	C	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.1860	p.K620N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	79	0	0	63	24	27.59	-	-	-	G	22155976	C	G	22155976	3	3	727	1	0	0	0	0	1	0	0	0	17862	680	24	4	1986	4	ZNF208	19	22155976	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	165450	22155976	36973007	809	64515										
TSHZ3	0	genome.wustl.edu	37	chr19	31768073	31768073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agcctcctccagagtggcccCgtcaatgtcagacttctcgg	10	15	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	31768073	31768073	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.2626	p.G876R	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	52	0	0	25	16	39.02	-	-	-	T	31768073	C	T	31768073	3	4	727	1	0	0	0	0	1	0	0	0	16721	652	23	1	623	1	TSHZ3	19	31768073	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	9612097	31768073	27360910	810	64516										
GPATCH1	0	genome.wustl.edu	37	chr19	33572169	33572169	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccgggctggagcctctggaaGaaggtgcgggccgcgtgggc	20	11	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	33572169	33572169	G	C	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.70	p.E24Q	1.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	29	0	0	23	11	32.35	-	-	-	C	33572169	G	C	33572169	3	2	727	1	0	0	0	0	1	0	0	0	6640	943	33	2	72	2	GPATCH1	19	33572169	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1804096	33572169	25556814	811	64517										
KIAA0355	0	genome.wustl.edu	37	chr19	34832394	34832394	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgattttggcaaccaggctGacctgccttctggaaatgga	12	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	34832394	34832394	G	T	SNP	KIAA0355	ENST00000299505	human	ensembl	69_37n	1	known	missense	c.1555	p.D519Y	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398	42	0	0	26	11	29.73	-	-	-	T	34832394	G	T	34832394	3	4	727	1	0	0	0	0	1	0	0	0	8222	1290	45	2	1589	2	KIAA0355	19	34832394	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1260225	34832394	24296589	812	64518										
ETV2	0	genome.wustl.edu	37	chr19	36135560	36135560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcctctgtcctaggtggctCggctgtggggcgagcgcaag	18	11	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	36135560	36135560	C	T	SNP	ETV2	ENST00000402764	human	ensembl	69_37n	1	known	missense	c.835	p.R279W	0.894	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV2	HGNC	ENSG00000105672	17	0	0	10	4	28.57	-	-	-	T	36135560	C	T	36135560	3	4	727	1	0	0	0	0	1	0	0	0	5315	875	31	1	857	1	ETV2	19	36135560	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1303166	36135560	22993423	813	64519										
HCST	0	genome.wustl.edu	37	chr19	36394703	36394703	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccggatgtgggtccctctctCtgccgctcctggcaggcctc	12	17	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	36394703	36394703	C	T	SNP	HCST	ENST00000246551	human	ensembl	69_37n	1	known	silent	c.139	p.L47	0.061	pfam_DAP10	pfam_DAP10	-	no_errors	HCST	HGNC	ENSG00000126264	31	0	0	13	5	27.78	-	-	-	T	36394703	C	T	36394703	2	4	727	1	0	0	0	0	0	0	0	1	7054	912	32	2		2	HCST	19	36394703	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	259143	36394703	22734280	814	64520										
RYR1	0	genome.wustl.edu	37	chr19	39070708	39070708	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctgcccatctcctggacatCgccatgggggtcaagacgct	12	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	39070708	39070708	C	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.14451	p.I4817M	0.989	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	42	0	0	19	5	20.83	-	-	-	G	39070708	C	G	39070708	3	3	727	1	0	0	0	0	1	0	0	0	13854	874	31	3	14849	3	RYR1	19	39070708	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2676005	39070708	20058275	815	64521										
PAF1	0	genome.wustl.edu	37	chr19	39880904	39880904	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcacagtggggctcacctctCaggcagagtccggtgggaat	15	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	39880904	39880904	C	A	SNP	PAF1	ENST00000221265	human	ensembl	69_37n	-1	known	nonsense	c.73	p.E25*	1.000	NULL	pfam_RNA_pol_II-assoc_Paf1	-	no_errors	PAF1	HGNC	ENSG00000006712	85	0	0	57	20	25.97	-	-	-	A	39880904	C	A	39880904	4	1	727	1	0	0	0	0	0	1	0	0	11456	835	29	2	1574	2	PAF1	19	39880904	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	810196	39880904	19248079	816	64522										
CEACAM8	0	genome.wustl.edu	37	chr19	43093885	43093885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatggagggcttgggagtctCcgctgtgcagaaaacagaga	16	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	43093885	43093885	C	T	SNP	CEACAM8	ENST00000244336	human	ensembl	69_37n	-1	known	missense	c.427	p.E143K	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM8	HGNC	ENSG00000124469	72	0	0	80	15	15.79	-	-	-	T	43093885	C	T	43093885	3	4	727	1	0	0	0	0	1	0	0	0	3227	864	30	2	634	2	CEACAM8	19	43093885	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3212981	43093885	16035098	817	64523										
PSG11	0	genome.wustl.edu	37	chr19	43519387	43519387	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggataaagagcttttgtcctGatagctgaaacttcccatta	8	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	43519387	43519387	G	C	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	nonsense	c.845	p.S282*	0.004	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	110	0	0	97	32	24.81	-	-	-	C	43519387	G	C	43519387	4	2	727	1	0	0	0	0	0	1	0	0	12734	1294	45	2	170	2	PSG11	19	43519387	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	425502	43519387	15609596	818	64524										
ZNF285	0	genome.wustl.edu	37	chr19	44892086	44892086	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgcctgcccactcttcactGagggaaacatcttctaaatg	7	12	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	44892086	44892086	G	A	SNP	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	silent	c.321	p.L107	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	58	0	0	45	24	34.78	-	-	-	A	44892086	G	A	44892086	2	1	727	1	0	0	0	0	0	0	0	1	17918	1277	45	2		2	ZNF285	19	44892086	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1372699	44892086	14236897	819	64525										
QPCTL	0	genome.wustl.edu	37	chr19	46196027	46196027	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgtggcctcatggagccactCttgccgccgaagcgccgcct	12	17	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	46196027	46196027	C	G	SNP	QPCTL	ENST00000012049	human	ensembl	69_37n	1	known	silent	c.66	p.L22	0.005	NULL	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478	20	0	0	10	4	28.57	-	-	-	G	46196027	C	G	46196027	2	3	727	1	0	0	0	0	0	0	0	1	12958	900	32	2		2	QPCTL	19	46196027	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1303941	46196027	12932956	820	64526										
KCNA7	0	genome.wustl.edu	37	chr19	49574011	49574011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcttggacagaccaggaggCgtaccagcagctcaaaggag	14	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	49574011	49574011	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	69_37n	-1	known	missense	c.680	p.R227H	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	67	0	0	40	15	26.79	-	-	-	T	49574011	C	T	49574011	3	4	727	1	0	0	0	0	1	0	0	0	8062	768	27	1	694	1	KCNA7	19	49574011	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3377984	49574011	9554972	821	64527										
PPFIA3	0	genome.wustl.edu	37	chr19	49643254	49643254	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctctgcacaaagcccccaaGaagaagagcatcaagtcatc	7	13	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	49643254	49643254	G	A	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	silent	c.2277	p.K759	0.999	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	60	0	0	31	16	34.04	-	-	-	A	49643254	G	A	49643254	2	1	727	1	0	0	0	0	0	0	0	1	12384	933	33	2		2	PPFIA3	19	49643254	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	69243	49643254	9485729	822	64528										
ZNF175	0	genome.wustl.edu	37	chr19	52090056	52090056	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcaaattcaacccatgagtCacagtgctttcttcaacaag	5	11	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	52090056	52090056	C	T	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	missense	c.472	p.H158Y	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	54	0	0	59	8	11.94	-	-	-	T	52090056	C	T	52090056	3	4	727	1	0	0	0	0	1	0	0	0	17841	826	29	2	486	2	ZNF175	19	52090056	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2446802	52090056	7038927	823	64529										
ZNF432	0	genome.wustl.edu	37	chr19	52537917	52537917	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtagggcttctctcctgtatGagttcgctgatgtataataa	10	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	52537917	52537917	G	A	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.1015	p.H339Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	81	0	0	55	26	32.1	-	-	-	A	52537917	G	A	52537917	3	1	727	1	0	0	0	0	1	0	0	0	18002	1290	45	2	947	2	ZNF432	19	52537917	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	447861	52537917	6591066	824	64530										
ZNF836	0	genome.wustl.edu	37	chr19	52658629	52658629	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttctctccagtgtgaattctCcgatgccttgcaaggttcga	9	11	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	52658629	52658629	C	T	SNP	ZNF836	ENST00000322146	human	ensembl	69_37n	-1	known	silent	c.2307	p.R769	0.044	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267	92	0	0	61	18	22.78	-	-	-	T	52658629	C	T	52658629	2	4	727	1	0	0	0	0	0	0	0	1	18280	842	30	2		2	ZNF836	19	52658629	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	120712	52658629	6470354	825	64531										
VN1R4	0	genome.wustl.edu	37	chr19	53770365	53770365	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacacaacacatcagggaatGataacaacattgcacgcagt	8	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	53770365	53770365	G	T	SNP	VN1R4	ENST00000311170	human	ensembl	69_37n	-1	known	nonsense	c.554	p.S185*	0.001	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567	58	0	0	38	8	17.02	-	-	-	T	53770365	G	T	53770365	4	4	727	1	0	0	0	0	0	1	0	0	17277	1294	45	2	354	2	VN1R4	19	53770365	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1111736	53770365	5358618	826	64532										
LILRB3	0	genome.wustl.edu	37	chr19	54745967	54745967	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagagctgtaatagtggcagCggtatctccctgcatggtgc	13	10	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	54745967	54745967	C	G	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.290	p.R97P	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	323	0	0	242	46	15.97	-	-	-	G	54745967	C	G	54745967	3	3	727	1	0	0	0	0	1	0	0	0	8847	768	27	3		3	LILRB3	19	54745967	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	975602	54745967	4383016	827	64533										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56733492	56733492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttgcccacaggtgtggcttCtccttgaggctcttcttggg	13	11	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	56733492	56733492	C	T	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.943	p.E315K	0.006	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	128	1	0.78	86	17	16.5	-	-	-	T	56733492	C	T	56733492	3	4	727	1	0	0	0	0	1	0	0	0	18329	922	32	2	551	2	ZSCAN5A	19	56733492	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1987525	56733492	2395491	828	64534										
AURKC	0	genome.wustl.edu	37	chr19	57743477	57743477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgggaatgtgtacctggctCggctcaaggaaagccatttc	12	9	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	57743477	57743477	C	T	SNP	AURKC	ENST00000302804	human	ensembl	69_37n	1	known	missense	c.181	p.R61W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKC	HGNC	ENSG00000105146	39	0	0	34	9	20.93	-	-	-	T	57743477	C	T	57743477	3	4	727	1	0	0	0	0	1	0	0	0	1228	875	31	1	196	1	AURKC	19	57743477	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1009985	57743477	1385506	829	64535										
ZNF805	0	genome.wustl.edu	37	chr19	57765876	57765876	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catcaaaggatgcatactggGagaaatcctatcagtgtaac	9	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	57765876	57765876	G	C	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	silent	c.1689	p.G563	0.925	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	73	0	0	55	24	30.38	-	-	-	C	57765876	G	C	57765876	2	2	727	1	0	0	0	0	0	0	0	1	18265	1161	41	2		2	ZNF805	19	57765876	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	22399	57765876	1363107	830	64536										
ZNF548	0	genome.wustl.edu	37	chr19	57910114	57910114	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacatggcagaggagatcttCacatgcatggagggctggaa	14	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	57910114	57910114	C	T	SNP	ZNF548	ENST00000336128	human	ensembl	69_37n	1	known	silent	c.495	p.F165	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785	52	0	0	32	17	34.69	-	-	-	T	57910114	C	T	57910114	2	4	727	1	0	0	0	0	0	0	0	1	18076	825	29	2		2	ZNF548	19	57910114	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	144238	57910114	1218869	831	64537										
ZNF550	0	genome.wustl.edu	37	chr19	58058554	58058554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtatgagttctgagctgcatCtgaaggcctttccacatgcc	10	11	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	58058554	58058554	C	G	SNP	ZNF550	ENST00000344222	human	ensembl	69_37n	-1	known	missense	c.1058	p.R353T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC003682.1	Clone_based_ensembl_gene	ENSG00000251369	73	0	0	72	9	11.11	-	-	-	G	58058554	C	G	58058554	3	3	727	1	0	0	0	0	1	0	0	0	18078	913	32	2	214	2	ZNF550	19	58058554	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	148440	58058554	1070429	832	64538										
ZNF211	0	genome.wustl.edu	37	chr19	58152607	58152607	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttcaggaccagagaatcctCactagagaaggactttttga	10	8	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	58152607	58152607	C	T	SNP	ZNF211	ENST00000407202	human	ensembl	69_37n	1	putative	missense	c.763	p.H255Y	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF211	HGNC	ENSG00000121417	27	0	0	17	11	39.29	-	-	-	T	58152607	C	T	58152607	3	4	727	1	0	0	0	0	1	0	0	0	17863	813	29	2	806	2	ZNF211	19	58152607	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	94053	58152607	976376	833	64539										
RPS5	0	genome.wustl.edu	37	chr19	58899511	58899511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caccctgtcccaggatgaccGagtgggagacagcagcacca	12	14	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	19	58899511	58899511	G	A	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	0.998	NULL	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	52	0	0	42	7	14.29	-	-	-	A	58899511	G	A	58899511	3	1	727	1	0	0	0	0	1	0	0	0	13734	1059	37	1	9	1	RPS5	19	58899511	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	746904	58899511	229472	834	64540										
PTPRA	0	genome.wustl.edu	37	chr20	2967452	2967452	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatggtggccctgtcctctCtgctagtgatcgtgtttatt	11	9	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	2967452	2967452	C	T	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	silent	c.517	p.L173	1.000	pirsf_Tyr_Pase_rcpt_a/e-type	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	153	0	0	105	32	23.36	-	-	-	T	2967452	C	T	2967452	2	4	727	1	0	0	0	0	0	0	0	1	12878	912	32	2		2	PTPRA	20	2967452	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09		2967452	60058068	835	64541										
PLCB1	0	genome.wustl.edu	37	chr20	8713940	8713940	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tacaacgggaagagtggctaCagattgaagccagagttcat	12	7	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	8713940	8713940	C	A	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	nonsense	c.1944	p.Y648*	1.000	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	85	0	0	40	9	18.37	-	-	-	A	8713940	C	A	8713940	4	1	727	1	0	0	0	0	0	1	0	0	12101	489	17	4	2018	4	PLCB1	20	8713940	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5746488	8713940	54311580	836	64542										
JAG1	0	genome.wustl.edu	37	chr20	10621580	10621580	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	catcccgtatatcttcagcaGactggaaaaacaattgtcag	7	10	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	10621580	10621580	G	A	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.3050	p.S1017F	1.000	NULL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	73	0	0	48	17	26.15	-	-	-	A	10621580	G	A	10621580	3	1	727	1	0	0	0	0	1	0	0	0	7988	956	33	2	614	2	JAG1	20	10621580	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1907640	10621580	52403940	837	64543										
FLRT3	0	genome.wustl.edu	37	chr20	14306370	14306370	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	attgcttattggtaacatctGaaaagaagtttccctgattt	7	6	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	14306370	14306370	G	T	SNP	FLRT3	ENST00000341420	human	ensembl	69_37n	-1	known	missense	c.1783	p.Q595K	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	89	0	0	68	18	20.93	-	-	-	T	14306370	G	T	14306370	3	4	727	1	0	0	0	0	1	0	0	0	5986	1299	45	2	170	2	FLRT3	20	14306370	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3684790	14306370	48719150	838	64544										
CRNKL1	0	genome.wustl.edu	37	chr20	20031155	20031155	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atcatttaattcttcttcatCtgtgatcttctgttgaggtg	7	7	7	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	20031155	20031155	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.646	p.D216N	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	147	0	0	117	44	27.33	-	-	-	T	20031155	C	T	20031155	3	4	727	1	0	0	0	0	1	0	0	0	3921	913	32	2	1952	2	CRNKL1	20	20031155	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5724785	20031155	42994365	839	64545										
NINL	0	genome.wustl.edu	37	chr20	25448048	25448048	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgttgagcacctccatctCagagcaggccttttccttgt	8	13	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	25448048	25448048	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.3400	p.E1134K	0.032	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	101	0	0	67	19	22.09	-	-	-	T	25448048	C	T	25448048	3	4	727	1	0	0	0	0	1	0	0	0	10492	835	29	2	772	2	NINL	20	25448048	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5416893	25448048	37577472	840	64546										
NCOA6	0	genome.wustl.edu	37	chr20	33329000	33329000	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagagggaggcatcaggccaGagttggttgtcagtggggct	18	7	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	33329000	33329000	G	C	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.5060	p.S1687C	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	91	0	0	81	37	31.36	-	-	-	C	33329000	G	C	33329000	3	2	727	1	0	0	0	0	1	0	0	0	10305	942	33	2	1151	2	NCOA6	20	33329000	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	7880952	33329000	29696520	841	64547										
SPAG4	0	genome.wustl.edu	37	chr20	34208630	34208630	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccaggtttatgatgaaactGaagtttccttggggaaattc	10	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	34208630	34208630	G	A	SNP	SPAG4	ENST00000374273	human	ensembl	69_37n	1	known	missense	c.1102	p.E368K	1.000	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SPAG4	HGNC	ENSG00000061656	48	0	0	33	14	29.79	-	-	-	A	34208630	G	A	34208630	3	1	727	1	0	0	0	0	1	0	0	0	15071	1291	45	2	1144	2	SPAG4	20	34208630	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	879630	34208630	28816890	842	64548										
C20orf132	0	genome.wustl.edu	37	chr20	35731097	35731097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgccttgtgtttctaggcaGaggacctgcccatgagcttc	11	11	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	35731097	35731097	G	C	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.3122	p.S1041C	0.003	NULL	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	89	0	0	68	15	18.07	-	-	-	C	35731097	G	C	35731097	3	2	727	1	0	0	0	0	1	0	0	0	2106	942	33	2	10	2	C20orf132	20	35731097	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1522467	35731097	27294423	843	64549										
C20orf132	0	genome.wustl.edu	37	chr20	35731195	35731195	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacagagtctgggaagcgatGatgcacagcgagggctcagg	16	8	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	35731195	35731195	G	T	SNP	C20orf132	ENST00000343811	human	ensembl	69_37n	-1	known	nonsense	c.3104	p.S1035*	0.972	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C20orf132	HGNC	ENSG00000101353	71	0	0	52	7	11.86	-	-	-	T	35731195	G	T	35731195	4	4	727	1	0	0	0	0	0	1	0	0	2106	1280	45	2	108	2	C20orf132	20	35731195	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	98	35731195	27294325	844	64550										
KIAA1755	0	genome.wustl.edu	37	chr20	36856635	36856635	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgccagccccttggctttatCttcaggcctgtgggtggtaa	12	12	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	36856635	36856635	C	T	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.1879	p.D627N	0.997	superfamily_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	33	0	0	22	6	21.43	-	-	-	T	36856635	C	T	36856635	3	4	727	1	0	0	0	0	1	0	0	0	8309	913	32	2	1759	2	KIAA1755	20	36856635	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1125440	36856635	26168885	845	64551										
KIAA1755	0	genome.wustl.edu	37	chr20	36870061	36870061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gttgtgtaggggatttccctCaaagtcactgttgatggcct	12	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	36870061	36870061	C	G	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.472	p.E158Q	0.867	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	86	0	0	39	16	28.57	-	-	-	G	36870061	C	G	36870061	3	3	727	1	0	0	0	0	1	0	0	0	8309	835	29	2	3178	2	KIAA1755	20	36870061	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	13426	36870061	26155459	846	64552										
TOP1	0	genome.wustl.edu	37	chr20	39744072	39744072	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgaggatgatctttttgataGactcaatgtgagtagatgaa	11	4	2	6			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	39744072	39744072	G	C	SNP	TOP1	ENST00000361337	human	ensembl	69_37n	1	known	missense	c.1700	p.R567T	1.000	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900	63	0	0	48	13	21.31	-	-	-	C	39744072	G	C	39744072	3	2	727	1	0	0	0	0	1	0	0	0	16459	942	33	2	1762	2	TOP1	20	39744072	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2874011	39744072	23281448	847	64553										
PKIG	0	genome.wustl.edu	37	chr20	43243223	43243223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggaggtcgagtcctcctactCggacttcatctcctgtgacc	10	14	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	43243223	43243223	C	T	SNP	PKIG	ENST00000349959	human	ensembl	69_37n	1	known	missense	c.26	p.S9L	1.000	pfam_cAMP_dep_PKI	pfam_cAMP_dep_PKI	-	no_errors	PKIG	HGNC	ENSG00000168734	24	0	0	17	7	29.17	-	-	-	T	43243223	C	T	43243223	3	4	727	1	0	0	0	0	1	0	0	0	12049	893	31	1	28	1	PKIG	20	43243223	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3499151	43243223	19782297	848	64554										
NCOA3	0	genome.wustl.edu	37	chr20	46281227	46281227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatgtcgtcaagaatgggtCcctcccagaatcccatgatg	10	11	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	46281227	46281227	C	T	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.4024	p.P1342S	0.959	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	74	0	0	65	10	13.33	-	-	-	T	46281227	C	T	46281227	3	4	727	1	0	0	0	0	1	0	0	0	10302	855	30	2	4128	2	NCOA3	20	46281227	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3038004	46281227	16744293	849	64555										
ARFGEF2	0	genome.wustl.edu	37	chr20	47570306	47570306	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaaatggagacgcacccagaGaaagaggctcatcactgtca	10	10	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	47570306	47570306	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.817	p.E273K	0.176	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	74	0	0	43	13	23.21	-	-	-	A	47570306	G	A	47570306	3	1	727	1	0	0	0	0	1	0	0	0	855	943	33	2	839	2	ARFGEF2	20	47570306	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1289079	47570306	15455214	850	64556										
ATP9A	0	genome.wustl.edu	37	chr20	50234064	50234064	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacgccgcagtcagattcctGaatcatgctgacgtcattgc	9	13	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	50234064	50234064	G	A	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	nonsense	c.2380	p.Q794*	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	50	0	0	26	6	18.75	-	-	-	A	50234064	G	A	50234064	4	1	727	1	0	0	0	0	0	1	0	0	1202	1299	45	2	791	2	ATP9A	20	50234064	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2663758	50234064	12791456	851	64557										
BCAS1	0	genome.wustl.edu	37	chr20	52574003	52574003	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtctttcccatttatttcttCtgagtgggtgatccctccat	7	11	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	52574003	52574003	C	T	SNP	BCAS1	ENST00000395961	human	ensembl	69_37n	-1	known	missense	c.1384	p.E462K	0.989	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	154	0	0	128	20	13.51	-	-	-	T	52574003	C	T	52574003	3	4	727	1	0	0	0	0	1	0	0	0	1354	922	32	2	382	2	BCAS1	20	52574003	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2339939	52574003	10451517	852	64558										
YTHDF1	0	genome.wustl.edu	37	chr20	61833941	61833941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtccacgggggacttcatctCggccaccccacaaaaatgcc	9	16	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	61833941	61833941	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	missense	c.1351	p.E451K	1.000	pfam_YTH_domain,pfscan_YTH_domain	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	42	0	0	38	13	25	-	-	-	T	61833941	C	T	61833941	3	4	727	1	0	0	0	0	1	0	0	0	17595	893	31	1	336	1	YTHDF1	20	61833941	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	9259938	61833941	1191579	853	64559										
PRIC285	0	genome.wustl.edu	37	chr20	62203587	62203587	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggttctcgaaggcctcctgaGagtggcaggtgaccaagcag	15	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	20	62203587	62203587	G	C	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	missense	c.152	p.S51C	0.996	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	20	0	0	6	4	36.36	-	-	-	C	62203587	G	C	62203587	3	2	727	1	0	0	0	0	1	0	0	0	12566	942	33	2	7896	2	PRIC285	20	62203587	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	369646	62203587	821933	854	64560										
CLDN8	0	genome.wustl.edu	37	chr21	31587860	31587860	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atgagcaccaccatgcccgtGatgatgaagatgattccagc	10	11	0	6			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	31587860	31587860	G	A	SNP	CLDN8	ENST00000286809	human	ensembl	69_37n	-1	known	silent	c.384	p.I128	0.093	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284	56	0	0	34	8	19.05	-	-	-	A	31587860	G	A	31587860	2	1	727	1	0	0	0	0	0	0	0	1	3521	1280	45	2		2	CLDN8	21	31587860	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		31587860	16542035	855	64561										
KRTAP13-4	0	genome.wustl.edu	37	chr21	31802938	31802938	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccagtggcttcagattcctGaaatatggaggctgtggttt	12	7	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	31802938	31802938	G	A	SNP	KRTAP13-4	ENST00000334068	human	ensembl	69_37n	1	known	silent	c.345	p.L115	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-4	HGNC	ENSG00000186971	95	0	0	79	26	24.53	-	-	-	A	31802938	G	A	31802938	2	1	727	1	0	0	0	0	0	0	0	1	8578	1277	45	2		2	KRTAP13-4	21	31802938	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	215078	31802938	16326957	856	64562										
GCFC1	0	genome.wustl.edu	37	chr21	34123276	34123276	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgtagaagtttcttcatcatCactggaaaggccttcaaggt	9	8	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	34123276	34123276	C	T	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	missense	c.1675	p.D559N	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	94	0	0	89	13	12.75	-	-	-	T	34123276	C	T	34123276	3	4	727	1	0	0	0	0	1	0	0	0	6339	826	29	2	1232	2	GCFC1	21	34123276	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2320338	34123276	14006619	857	64563										
ITSN1	0	genome.wustl.edu	37	chr21	35122544	35122544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatgtctccaaccctagtatCttctgttcccacagcagctg	6	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	35122544	35122544	C	G	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.443	p.S148C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	74	0	0	55	9	14.06	-	-	-	G	35122544	C	G	35122544	3	3	727	1	0	0	0	0	1	0	0	0	7980	913	32	2	461	2	ITSN1	21	35122544	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	999268	35122544	13007351	858	64564										
CLIC6	0	genome.wustl.edu	37	chr21	36088711	36088711	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gcttatgctagagatgagttCacaaatacgtgtccagctga	10	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	36088711	36088711	C	A	SNP	CLIC6	ENST00000360731	human	ensembl	69_37n	1	known	missense	c.2046	p.F682L	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC6	HGNC	ENSG00000159212	106	0	0	84	31	26.96	-	-	-	A	36088711	C	A	36088711	3	1	727	1	0	0	0	0	1	0	0	0	3560	825	29	2	2014	2	CLIC6	21	36088711	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	966167	36088711	12041184	859	64565										
ETS2	0	genome.wustl.edu	37	chr21	40191444	40191444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagggactcccaaagaccacGactcccctgagaacggtgcg	11	15	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	40191444	40191444	G	A	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.829	p.D277N	0.984	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	40	0	0	30	4	11.76	-	-	-	A	40191444	G	A	40191444	3	1	727	1	0	0	0	0	1	0	0	0	5313	1058	37	1	855	1	ETS2	21	40191444	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4102733	40191444	7938451	860	64566										
BRWD1	0	genome.wustl.edu	37	chr21	40570906	40570906	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agaatcttggtttttttaaaGaaactcgcattcttgtgaaa	7	5	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	40570906	40570906	G	C	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5436	p.F1812L	0.005	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	89	0	0	58	15	20.55	-	-	-	C	40570906	G	C	40570906	3	2	727	1	0	0	0	0	1	0	0	0	1533	933	33	2	1777	2	BRWD1	21	40570906	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	379462	40570906	7558989	861	64567										
ABCG1	0	genome.wustl.edu	37	chr21	43716451	43716451	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gggattttcttcatctccctCcgcctcattgcctattttgt	6	13	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	43716451	43716451	C	G	SNP	ABCG1	ENST00000398437	human	ensembl	69_37n	1	known	silent	c.2424	p.L808	1.000	tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	76	0	0	45	6	11.76	-	-	-	G	43716451	C	G	43716451	2	3	727	1	0	0	0	0	0	0	0	1	68	842	30	2		2	ABCG1	21	43716451	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3145545	43716451	4413444	862	64568										
PWP2	0	genome.wustl.edu	37	chr21	45534480	45534480	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ccattgctggtcttgaatatCaactatgtccgcgttccttc	7	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	45534480	45534480	C	T	SNP	PWP2	ENST00000486126	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	PWP2	HGNC	ENSG00000241945	38	0	0	32	10	23.81	-	-	-	T	45534480	C	T	45534480	1	4	727	0	1	0	0	0	0	0	0	0	12927	841	29	2		2	PWP2	21	45534480	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1818029	45534480	2595415	863	64569										
ITGB2	0	genome.wustl.edu	37	chr21	46311909	46311909	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgaccttcacctggaaggtGatctgcagggcagtgctggg	16	9	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	46311909	46311909	G	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	silent	c.1227	p.I409	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	36	0	0	18	5	21.74	-	-	-	T	46311909	G	T	46311909	2	4	727	1	0	0	0	0	0	0	0	1	7948	1280	45	2		2	ITGB2	21	46311909	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	777429	46311909	1817986	864	64570										
COL6A1	0	genome.wustl.edu	37	chr21	47407424	47407424	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccccacagtgctgctccttCgaatgccaggtgagtgtgcc	11	15	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	47407424	47407424	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	1	known	silent	c.750	p.F250	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	56	0	0	26	12	30.77	-	-	-	T	47407424	C	T	47407424	2	4	727	1	0	0	0	0	0	0	0	1	3729	883	31	1		1	COL6A1	21	47407424	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1095515	47407424	722471	865	64571										
FTCD	0	genome.wustl.edu	37	chr21	47556829	47556829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgaacaagctgtgtccccacCgaggtcacagctctgccctc	9	17	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	21	47556829	47556829	C	T	SNP	FTCD	ENST00000359679	human	ensembl	69_37n	-1	known	missense	c.1678	p.E560K	0.001	NULL	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282	15	0	0	8	4	33.33	-	-	-	T	47556829	C	T	47556829	3	4	727	1	0	0	0	0	1	0	0	0	6130	667	23	1		1	FTCD	21	47556829	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	149405	47556829	573066	866	64572										
POTEH	0	genome.wustl.edu	37	chr22	16287463	16287463	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cccctgcagcaggggaagcaGtggcagcaccacttgcccat	12	15	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	16287463	16287463	G	C	SNP	POTEH	ENST00000343518	human	ensembl	69_37n	-1	known	missense	c.423	p.H141Q	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	75	0	0	89	21	19.09	-	-	-	C	16287463	G	C	16287463	3	2	727	1	0	0	0	0	1	0	0	0	12341	1020	36	4	1254	4	POTEH	22	16287463	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		16287463	35017103	867	64573										
OR11H1	0	genome.wustl.edu	37	chr22	16449769	16449769	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gaatttggctcagagacattCattaggccagtgacctgcaa	10	9	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	16449769	16449769	C	T	SNP	OR11H1	ENST00000252835	human	ensembl	69_37n	-1	known	missense	c.36	p.M12I	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538	35	0	0	29	7	19.44	-	-	-	T	16449769	C	T	16449769	3	4	727	1	0	0	0	0	1	0	0	0	10999	826	29	2	946	2	OR11H1	22	16449769	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	162306	16449769	34854797	868	64574										
DGCR14	0	genome.wustl.edu	37	chr22	19127420	19127420	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagcgtggcgtgcccggcttCtctccttggccacctccatg	11	16	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	19127420	19127420	C	T	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.518	p.R173K	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	48	0	0	35	11	23.91	-	-	-	T	19127420	C	T	19127420	3	4	727	1	0	0	0	0	1	0	0	0	4496	913	32	2	940	2	DGCR14	22	19127420	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2677651	19127420	32177146	869	64575										
UBE2L3	0	genome.wustl.edu	37	chr22	21922054	21922054	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	atggcggccagcaggaggctGatgaaggtaaaagccattct	14	8	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	21922054	21922054	G	T	SNP	UBE2L3	ENST00000342192	human	ensembl	69_37n	1	known	silent	c.21	p.L7	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_UEV_N,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L3	HGNC	ENSG00000185651	17	0	0	11	4	26.67	-	-	-	T	21922054	G	T	21922054	2	4	727	1	0	0	0	0	0	0	0	1	16960	1277	45	2		2	UBE2L3	22	21922054	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2794634	21922054	29382512	870	64576										
PIWIL3	0	genome.wustl.edu	37	chr22	25124145	25124145	+	Missense_Mutation	SNP	T	T	A													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tcagtgaaatacaacatacgTctgtctccaccttccagagg							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	25124145	25124145	T	A	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.1931	p.D644V	0.001	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	103	0	0	86	24	21.62	-	-	-	A	25124145	T	A	25124145	3	1	727	1	0	0	0	0	1	0	0	0	12033	1681	58	5	745	5	PIWIL3	22	25124145	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	3202091	25124145	26180421	871	64577	471	2								
PIWIL3	0	genome.wustl.edu	37	chr22	25124146	25124146	+	Missense_Mutation	SNP	C	C	G													0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagtgaaatacaacatacgtCtgtctccaccttccagaggg							TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	25124146	25124146	C	G	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.1930	p.D644H	0.001	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	105	0	0	89	24	21.24	-	-	-	G	25124146	C	G	25124146	3	3	727	1	0	0	0	0	1	0	0	0	12033	913	32	2	746	2	PIWIL3	22	25124146	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1	25124146	26180420	872	64578	471	2								
SGSM1	0	genome.wustl.edu	37	chr22	25308675	25308675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	accagaacttcccccacggaGgcgccatggacacgcacttt	9	16	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	25308675	25308675	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	1	known	missense	c.3049	p.G1017S	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	78	0	0	56	8	12.31	-	-	-	A	25308675	G	A	25308675	3	1	727	1	0	0	0	0	1	0	0	0	14310	1000	35	4	3139	4	SGSM1	22	25308675	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	184529	25308675	25995891	873	64579										
HPS4	0	genome.wustl.edu	37	chr22	26859979	26859979	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgagtgtagagattcatcctCacgagccccatgcaggactc	10	12	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	26859979	26859979	C	T	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	silent	c.1656	p.V552	0.522	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	39	0	0	15	6	28.57	-	-	-	T	26859979	C	T	26859979	2	4	727	1	0	0	0	0	0	0	0	1	7392	813	29	2		2	HPS4	22	26859979	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1551304	26859979	24444587	874	64580										
CRYBA4	0	genome.wustl.edu	37	chr22	27026323	27026323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctgggtttgctcccagtttCcgggctaccgaggatttcag	13	11	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	27026323	27026323	C	T	SNP	CRYBA4	ENST00000354760	human	ensembl	69_37n	1	known	missense	c.463	p.P155S	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA4	HGNC	ENSG00000196431	103	0	0	63	25	28.41	-	-	-	T	27026323	C	T	27026323	3	4	727	1	0	0	0	0	1	0	0	0	3939	855	30	2	481	2	CRYBA4	22	27026323	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	166344	27026323	24278243	875	64581										
ASCC2	0	genome.wustl.edu	37	chr22	30221653	30221653	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcaaggccaggagccagtcGaggtcattggctacgaaggt	16	9	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	30221653	30221653	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	62	0	0	37	12	24.49	-	-	-	A	30221653	G	A	30221653	2	1	727	1	0	0	0	0	0	0	0	1	1036	1045	37	1		1	ASCC2	22	30221653	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3195330	30221653	21082913	876	64582										
APOL6	0	genome.wustl.edu	37	chr22	36054791	36054791	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaagggaacattgacaagctCcgtgccctcgcagacgatat	10	11	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	36054791	36054791	C	T	SNP	APOL6	ENST00000409652	human	ensembl	69_37n	1	known	silent	c.180	p.L60	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963	73	0	0	47	23	31.94	-	-	-	T	36054791	C	T	36054791	2	4	727	1	0	0	0	0	0	0	0	1	812	842	30	2		2	APOL6	22	36054791	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	5833138	36054791	15249775	877	64583										
CBY1	0	genome.wustl.edu	37	chr22	39069209	39069209	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acttaatggagaaggaactgGatgaactgaggatcagccgg	14	6	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	39069209	39069209	G	C	SNP	CBY1	ENST00000216029	human	ensembl	69_37n	1	known	missense	c.349	p.D117H	1.000	NULL	NULL	-	no_errors	CBY1	HGNC	ENSG00000100211	74	0	0	46	16	25.81	-	-	-	C	39069209	G	C	39069209	3	2	727	1	0	0	0	0	1	0	0	0	2750	1174	41	2	363	2	CBY1	22	39069209	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3014418	39069209	12235357	878	64584										
EFCAB6	0	genome.wustl.edu	37	chr22	44079633	44079633	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttcaaaatcttacagtgttGattatcagtaatgctttctt	5	6	4	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	44079633	44079633	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	silent	c.1245	p.I415	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	129	0	0	121	14	10.14	-	-	-	A	44079633	G	A	44079633	2	1	727	1	0	0	0	0	0	0	0	1	4974	1280	45	2		2	EFCAB6	22	44079633	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5010424	44079633	7224933	879	64585										
PARVG	0	genome.wustl.edu	37	chr22	44585003	44585003	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cctgcctccagagaggctggCggcgctcaagctggaagcag	15	13	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	44585003	44585003	C	G	SNP	PARVG	ENST00000415224	human	ensembl	69_37n	1	known	missense	c.257	p.A86G	0.189	pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVG	HGNC	ENSG00000138964	32	0	0	9	11	55	-	-	-	G	44585003	C	G	44585003	3	3	727	1	0	0	0	0	1	0	0	0	11543	768	27	3	271	3	PARVG	22	44585003	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	505370	44585003	6719563	880	64586										
SBF1	0	genome.wustl.edu	37	chr22	50898965	50898965	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgggacccagatccatacctGagggaaggacccttgtcctt	11	12	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	50898965	50898965	G	A	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	silent	c.3144	p.L1048	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	50	0	0	28	8	22.22	-	-	-	A	50898965	G	A	50898965	2	1	727	1	0	0	0	0	0	0	0	1	13945	1277	45	2		2	SBF1	22	50898965	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6313962	50898965	405601	881	64587										
SBF1	0	genome.wustl.edu	37	chr22	50899061	50899061	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtggccctgatgtccggcggGtaccgcagcttatgcagctg	15	12	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	50899061	50899061	G	C	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	nonsense	c.3048	p.Y1016*	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	33	0	0	17	7	29.17	-	-	-	C	50899061	G	C	50899061	4	2	727	1	0	0	0	0	0	1	0	0	13945	1256	44	4	2705	4	SBF1	22	50899061	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	96	50899061	405505	882	64588										
SBF1	0	genome.wustl.edu	37	chr22	50899605	50899605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cacctggaatgtgcaggagcGcagctggagcccgtcctgca	14	13	0	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	22	50899605	50899605	G	A	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	missense	c.2950	p.R984C	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	57	0	0	20	10	33.33	-	-	-	A	50899605	G	A	50899605	3	1	727	1	0	0	0	0	1	0	0	0	13945	1087	38	1	2807	1	SBF1	22	50899605	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	544	50899605	404961	883	64589										
VCX	0	genome.wustl.edu	37	chrX	7811247	7811247	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacgttgagctgcggaagatGagtccaaagccgagagcctc	14	10	0	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	7811247	7811247	G	C	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	missense	c.3	p.M1I	0.004	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	163	0	0	43	5	10.42	-	-	-	C	7811247	G	C	7811247	3	2	727	1	0	0	0	0	1	0	0	0	17239	1290	45	2	5	2	VCX	23	7811247	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09		7811247	147459313	884	64590										
CLCN4	0	genome.wustl.edu	37	chrX	10174758	10174758	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctttcagctgcagcggctgCtggagtctctgttgcctttg	13	11	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	10174758	10174758	C	G	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	missense	c.785	p.A262G	0.999	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	156	0	0	72	14	16.09	-	-	-	G	10174758	C	G	10174758	3	3	727	1	0	0	0	0	1	0	0	0	3495	797	28	4	807	4	CLCN4	23	10174758	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2363511	10174758	145095802	885	64591										
ARHGAP6	0	genome.wustl.edu	37	chrX	11272783	11272783	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctctggatggggactgacctCagccgtacactgcggcctga	13	13	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	11272783	11272783	C	T	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	silent	c.633	p.L211	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	29	0	0	18	7	28	-	-	-	T	11272783	C	T	11272783	2	4	727	1	0	0	0	0	0	0	0	1	889	813	29	2		2	ARHGAP6	23	11272783	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	1098025	11272783	143997777	886	64592										
ASB9	0	genome.wustl.edu	37	chrX	15262576	15262576	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttttaaaattctagtggctaCaacactcaataatgttttca	4	7	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	15262576	15262576	C	A	SNP	ASB9	ENST00000473862	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB9	HGNC	ENSG00000102048	48	0	0	27	14	34.15	-	-	-	A	15262576	C	A	15262576	1	1	727	0	1	0	0	0	0	0	0	0	1034	493	17	4		4	ASB9	23	15262576	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3989793	15262576	140007984	887	64593										
PIR	0	genome.wustl.edu	37	chrX	15403102	15403102	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ggcaaaattctaggacacatCaagacctgctcttccgcttt	7	12	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	15403102	15403102	C	G	SNP	PIR	ENST00000492432	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIR	HGNC	ENSG00000087842	153	0	0	72	10	12.05	-	-	-	G	15403102	C	G	15403102	1	3	727	0	1	0	0	0	0	0	0	0	12018	841	29	2		2	PIR	23	15403102	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	140526	15403102	139867458	888	64594										
CA5B	0	genome.wustl.edu	37	chrX	15793409	15793409	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gctacagaaattagtggataCtttgccgtcaattaagcata	8	7	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	15793409	15793409	C	A	SNP	CA5B	ENST00000318636	human	ensembl	69_37n	1	known	missense	c.596	p.T199N	0.766	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA5B	HGNC	ENSG00000169239	136	0	0	74	10	11.9	-	-	-	A	15793409	C	A	15793409	3	1	727	1	0	0	0	0	1	0	0	0	2545	565	20	4	614	4	CA5B	23	15793409	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	390307	15793409	139477151	889	64595										
PPEF1	0	genome.wustl.edu	37	chrX	18797190	18797190	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gactttgtagatcgaggaaaGaattccatagagatcctaat	9	6	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	18797190	18797190	G	C	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.621	p.K207N	0.996	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	69	0	0	69	12	14.81	-	-	-	C	18797190	G	C	18797190	3	2	727	1	0	0	0	0	1	0	0	0	12380	933	33	2	647	2	PPEF1	23	18797190	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	3003781	18797190	136473370	890	64596										
PRDX4	0	genome.wustl.edu	37	chrX	23704421	23704421	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gataatcccagatccagctgGaaagctgaagtatttcgata	9	8	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	23704421	23704421	G	C	SNP	PRDX4	ENST00000379341	human	ensembl	69_37n	1	known	missense	c.785	p.G262A	1.000	pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX4	HGNC	ENSG00000123131	114	0	0	67	28	29.17	-	-	-	C	23704421	G	C	23704421	3	2	727	1	0	0	0	0	1	0	0	0	12548	1174	41	2	811	2	PRDX4	23	23704421	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4907231	23704421	131566139	891	64597										
ZFX	0	genome.wustl.edu	37	chrX	24225861	24225861	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	acattgtggagagtgagcctGagaatgatcatggagttgaa	14	4	1	5			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	24225861	24225861	G	C	SNP	ZFX	ENST00000540034	human	ensembl	69_37n	1	known	missense	c.946	p.E316Q	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	139	0	0	85	14	14.14	-	-	-	C	24225861	G	C	24225861	3	2	727	1	0	0	0	0	1	0	0	0	17757	1291	45	2	843	2	ZFX	23	24225861	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	521440	24225861	131044699	892	64598										
ARX	0	genome.wustl.edu	37	chrX	25028418	25028418	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtccagcctcatggccagttCctccctataagaaagcaaca	7	14	1	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	25028418	25028418	C	G	SNP	ARX	ENST00000379044	human	ensembl	69_37n	-1	known	missense	c.1078	p.E360Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	ARX	HGNC	ENSG00000004848	60	0	0	22	7	24.14	-	-	-	G	25028418	C	G	25028418	3	3	727	1	0	0	0	0	1	0	0	0	1008	864	30	2	622	2	ARX	23	25028418	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	802557	25028418	130242142	893	64599										
DDX3X	0	genome.wustl.edu	37	chrX	41203588	41203588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aacgtggatgccatttgttaGtagccactccaggacgtcta	10	10	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	41203588	41203588	G	T	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.961	p.V321L	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	243	0	0	130	31	19.25	-	-	-	T	41203588	G	T	41203588	3	4	727	1	0	0	0	0	1	0	0	0	4389	1029	36	4	999	4	DDX3X	23	41203588	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	16175170	41203588	114066972	894	64600										
CASK	0	genome.wustl.edu	37	chrX	41413095	41413095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgatgtcaccaactctgaatCgaatgccagcttctttacag	7	11	3	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	41413095	41413095	C	T	SNP	CASK	ENST00000378163	human	ensembl	69_37n	-1	known	missense	c.1916	p.R639Q	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Prot_kinase_cat_dom,pfam_Guanylate_kin,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Guanylate_kin	-	no_errors	CASK	HGNC	ENSG00000147044	120	0	0	53	37	41.11	-	-	-	T	41413095	C	T	41413095	3	4	727	1	0	0	0	0	1	0	0	0	2690	884	31	1	892	1	CASK	23	41413095	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	209507	41413095	113857465	895	64601										
PQBP1	0	genome.wustl.edu	37	chrX	48755788	48755788	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tccctaggtctgtctgctatCagctatgccgctgcccgttg	10	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	48755788	48755788	C	G	SNP	PQBP1	ENST00000470062	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PQBP1	HGNC	ENSG00000102103	182	0	0	64	35	35.35	-	-	-	G	48755788	C	G	48755788	1	3	727	0	1	0	0	0	0	0	0	0	12494	841	29	2		2	PQBP1	23	48755788	RNA	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	7342693	48755788	106514772	896	64602										
CCDC120	0	genome.wustl.edu	37	chrX	48922181	48922181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgcctgggcatgcgtcttgCtcagctcagccaaggtgagc	13	13	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	48922181	48922181	C	T	SNP	CCDC120	ENST00000422185	human	ensembl	69_37n	1	known	missense	c.605	p.A202V	0.776	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	31	0	0	7	5	41.67	-	-	-	T	48922181	C	T	48922181	3	4	727	1	0	0	0	0	1	0	0	0	2781	797	28	4	619	4	CCDC120	23	48922181	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	166393	48922181	106348379	897	64603										
SHROOM4	0	genome.wustl.edu	37	chrX	50377931	50377931	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aagcctcattgagtgggttgGaatccacgctggaagctctg	13	9	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	50377931	50377931	G	C	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.1142	p.S381C	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	33	0	0	14	9	37.5	-	-	-	C	50377931	G	C	50377931	3	2	727	1	0	0	0	0	1	0	0	0	14385	1174	41	2	3363	2	SHROOM4	23	50377931	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1455750	50377931	104892629	898	64604										
WNK3	0	genome.wustl.edu	37	chrX	54319739	54319739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aatgtataactgatgcagctCctgcctcagacaaattgtca	7	10	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	54319739	54319739	C	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.1715	p.G572E	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	63	0	0	40	16	28.57	-	-	-	T	54319739	C	T	54319739	3	4	727	1	0	0	0	0	1	0	0	0	17476	855	30	2	3751	2	WNK3	23	54319739	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3941808	54319739	100950821	899	64605										
PJA1	0	genome.wustl.edu	37	chrX	68382501	68382501	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tttgtggcaggaagtcagctCtgctagctgagcatcttgct	12	9	3	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	68382501	68382501	C	T	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.581	p.R194K	0.675	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	48	0	0	12	7	35	-	-	-	T	68382501	C	T	68382501	3	4	727	1	0	0	0	0	1	0	0	0	12035	913	32	2	1354	2	PJA1	23	68382501	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	14062762	68382501	86888059	900	64606			1	102		3	3	250	C		2.690204e-05
PJA1	0	genome.wustl.edu	37	chrX	68382697	68382697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctcaacaggcccagccccctCctcctcactatcatctgccc	4	22	4	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	68382697	68382697	C	T	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.385	p.E129K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	71	0	0	35	9	20.45	-	-	-	T	68382697	C	T	68382697	3	4	727	1	0	0	0	0	1	0	0	0	12035	864	30	2	1550	2	PJA1	23	68382697	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	196	68382697	86887863	901	64607			1	102		3	3	250	C		2.690204e-05
PJA1	0	genome.wustl.edu	37	chrX	68382750	68382750	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tatgtccataggccattcctCttctgctacccgaagctctg	7	14	3	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	68382750	68382750	C	G	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.332	p.R111T	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	77	0	0	46	12	20.69	-	-	-	G	68382750	C	G	68382750	3	3	727	1	0	0	0	0	1	0	0	0	12035	913	32	2	1603	2	PJA1	23	68382750	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	53	68382750	86887810	902	64608			1	102		3	3	250	C		2.690204e-05
KIF4A	0	genome.wustl.edu	37	chrX	69572501	69572501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttgatactgcggtggagcaaGaagccgtaagtaattggccc	13	8	0	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	69572501	69572501	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.1483	p.E495K	0.997	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	114	0	0	52	10	15.87	-	-	-	A	69572501	G	A	69572501	3	1	727	1	0	0	0	0	1	0	0	0	8355	943	33	2	1533	2	KIF4A	23	69572501	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1189751	69572501	85698059	903	64609										
MED12	0	genome.wustl.edu	37	chrX	70342620	70342620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gacgggtacttcatactttgGaagtgctggacagccatagt	12	8	1	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	70342620	70342620	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.1381	p.E461K	1.000	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	65	0	0	50	7	12.28	-	-	-	A	70342620	G	A	70342620	3	1	727	1	0	0	0	0	1	0	0	0	9499	1175	41	2	1419	2	MED12	23	70342620	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	770119	70342620	84927940	904	64610										
MED12	0	genome.wustl.edu	37	chrX	70346870	70346870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agctgcttctcaaatcctcgGatctggtgggcagctacact	10	12	2	0			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	70346870	70346870	G	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.2737	p.D913Y	0.998	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	125	0	0	35	31	46.27	-	-	-	T	70346870	G	T	70346870	3	4	727	1	0	0	0	0	1	0	0	0	9499	1174	41	2	2815	2	MED12	23	70346870	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	4250	70346870	84923690	905	64611										
MAGEE2	0	genome.wustl.edu	37	chrX	75003629	75003629	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	caagttccagacattggcctCtttgacacggttgcccatca	8	13	2	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	75003629	75003629	C	G	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.1258	p.E420Q	0.905	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	48	0	0	30	12	28.57	-	-	-	G	75003629	C	G	75003629	3	3	727	1	0	0	0	0	1	0	0	0	9257	922	32	2	317	2	MAGEE2	23	75003629	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4656759	75003629	80266931	906	64612										
ATP7A	0	genome.wustl.edu	37	chrX	77294443	77294443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gatttcatgactgaacatgaGagaaaaggtcggactgctgt	12	6	1	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	77294443	77294443	G	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.3621	p.E1207D	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	93	0	0	54	23	29.87	-	-	-	C	77294443	G	C	77294443	3	2	727	1	0	0	0	0	1	0	0	0	1194	933	33	2	3687	2	ATP7A	23	77294443	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2290814	77294443	77976117	907	64613										
RPS6KA6	0	genome.wustl.edu	37	chrX	83372093	83372093	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctatttgctggattccttttGaataacatccttagaagact	6	8	0	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	83372093	83372093	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	silent	c.924	p.F308	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	81	0	0	37	10	21.28	-	-	-	A	83372093	G	A	83372093	2	1	727	1	0	0	0	0	0	0	0	1	13741	1281	45	2		2	RPS6KA6	23	83372093	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6077650	83372093	71898467	908	64614										
HDX	0	genome.wustl.edu	37	chrX	83724310	83724310	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	agtatcatttttagtggctgTtttctgaatagggattttat	9	3	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	83724310	83724310	T	G	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.421	p.T141P	0.965	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	243	0	0	129	41	24.12	-	-	-	G	83724310	T	G	83724310	3	3	727	1	0	0	0	0	1	0	0	0	7077	1725	60	5	1683	5	HDX	23	83724310	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	352217	83724310	71546250	909	64615										
ZNF711	0	genome.wustl.edu	37	chrX	84520127	84520127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	gtgttttaatttttaaggtgGaacagaaattgtcacagaga	10	3	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	84520127	84520127	G	T	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.716	p.G239V	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	31	0	0	35	6	14.63	-	-	-	T	84520127	G	T	84520127	3	4	727	1	0	0	0	0	1	0	0	0	18212	1174	41	2	796	2	ZNF711	23	84520127	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	795817	84520127	70750433	910	64616										
KLHL4	0	genome.wustl.edu	37	chrX	86773201	86773201	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tctgatagtacattttcaagCaaatgaagatactcctaaat	5	7	2	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	86773201	86773201	C	G	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	1	known	missense	c.305	p.A102G	0.999	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	47	0	0	27	8	22.86	-	-	-	G	86773201	C	G	86773201	3	3	727	1	0	0	0	0	1	0	0	0	8444	710	25	4	307	4	KLHL4	23	86773201	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	2253074	86773201	68497359	911	64617										
NXF3	0	genome.wustl.edu	37	chrX	102338584	102338584	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttcattctgaatcaaattcaGcagccacttctcattgtatt	4	10	5	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	102338584	102338584	G	C	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.388	p.L130V	0.426	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	125	0	0	60	15	19.74	-	-	-	C	102338584	G	C	102338584	3	2	727	1	0	0	0	0	1	0	0	0	10858	962	34	4	1271	4	NXF3	23	102338584	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	15565383	102338584	52931976	912	64618										
ACSL4	0	genome.wustl.edu	37	chrX	108924259	108924259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tagatcccaactcttctactGattgcatgctgtgaatctca	6	11	3	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	108924259	108924259	G	A	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	missense	c.746	p.S249L	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	114	0	0	56	28	32.94	-	-	-	A	108924259	G	A	108924259	3	1	727	1	0	0	0	0	1	0	0	0	179	1294	45	2	1433	2	ACSL4	23	108924259	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	6585675	108924259	46346301	913	64619										
HTR2C	0	genome.wustl.edu	37	chrX	114141977	114141977	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cgaaaggattagcagtgtgtGagaaagaacagcacagtctt	12	6	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	114141977	114141977	G	A	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	silent	c.1376	p.*459	0.900	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	31	0	0	18	12	40	-	-	-	A	114141977	G	A	114141977	2	1	727	1	0	0	0	0	0	0	0	1	7497	1285	45	2		2	HTR2C	23	114141977	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	5217718	114141977	41128583	914	64620										
WDR44	0	genome.wustl.edu	37	chrX	117528092	117528092	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aaagtacggttaaggattctCagccttctcttgatttggca	9	8	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	117528092	117528092	C	T	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	nonsense	c.901	p.Q301*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	114	0	0	47	21	30.43	-	-	-	T	117528092	C	T	117528092	4	4	727	1	0	0	0	0	0	1	0	0	17393	827	29	2	919	2	WDR44	23	117528092	Nonsense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	3386115	117528092	37742468	915	64621										
ZDHHC9	0	genome.wustl.edu	37	chrX	128946745	128946745	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aggaaagtatgaaatccagtCagtcccacgacggaccagag	11	10	1	2			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	128946745	128946745	C	T	SNP	ZDHHC9	ENST00000357166	human	ensembl	69_37n	-1	known	silent	c.726	p.L242	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC9	HGNC	ENSG00000188706	78	0	0	40	9	18.37	-	-	-	T	128946745	C	T	128946745	2	4	727	1	0	0	0	0	0	0	0	1	17718	813	29	2		2	ZDHHC9	23	128946745	Silent	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	11418653	128946745	26323815	916	64622										
ZNF280C	0	genome.wustl.edu	37	chrX	129380846	129380846	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	tgcttacttgaaatggctggTtttgaacttgatatctctcc	8	8	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	129380846	129380846	T	G	SNP	ZNF280C	ENST00000370978	human	ensembl	69_37n	-1	known	missense	c.165	p.K55N	0.999	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277	185	0	0	102	24	19.05	-	-	-	G	129380846	T	G	129380846	3	3	727	1	0	0	0	0	1	0	0	0	17912	1722	60	5	2116	5	ZNF280C	23	129380846	Missense_Mutation	SNP	T	TCGA-D8-A27G-01A-11D-A16D-09	434101	129380846	25889714	917	64623										
TFDP3	0	genome.wustl.edu	37	chrX	132351621	132351621	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cttgaaagcaatttgctgtaGaataagttgttgaagttcag	10	4	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	132351621	132351621	G	C	SNP	TFDP3	ENST00000310125	human	ensembl	69_37n	-1	known	missense	c.667	p.L223V	0.991	pfam_Transc_factor_DP_C,pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP3	HGNC	ENSG00000183434	133	0	0	63	28	30.43	-	-	-	C	132351621	G	C	132351621	3	2	727	1	0	0	0	0	1	0	0	0	15894	933	33	2	554	2	TFDP3	23	132351621	Missense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	2970775	132351621	22918939	918	64624										
CXorf48	0	genome.wustl.edu	37	chrX	134292176	134292176	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	cagaagttgccttgatgtttGagatgcctggctcagtggaa	13	7	1	3			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	134292176	134292176	G	C	SNP	CXorf48	ENST00000276241	human	ensembl	69_37n	-1	known	nonsense	c.485	p.S162*	0.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf48	HGNC	ENSG00000169551	94	0	0	54	12	18.18	-	-	-	C	134292176	G	C	134292176	4	2	727	1	0	0	0	0	0	1	0	0	4142	1294	45	2	325	2	CXorf48	23	134292176	Nonsense_Mutation	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1940555	134292176	20978384	919	64625										
MCF2	0	genome.wustl.edu	37	chrX	138698560	138698560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ttggagagctttctgagcatCttctttagactgaaacttat	8	7	3	4			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	138698560	138698560	C	T	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	missense	c.1507	p.D503N	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	32	0	0	16	10	37.04	-	-	-	T	138698560	C	T	138698560	3	4	727	1	0	0	0	0	1	0	0	0	9449	913	32	2	1853	2	MCF2	23	138698560	Missense_Mutation	SNP	C	TCGA-D8-A27G-01A-11D-A16D-09	4406384	138698560	16572000	920	64626										
MAGEA12	0	genome.wustl.edu	37	chrX	151900474	151900474	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	aactcagccatcttcctactGagtgctacttggaagctcgt	8	12	2	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	151900474	151900474	G	A	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.327	p.L109	0.000	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	126	0	0	46	27	36.99	-	-	-	A	151900474	G	A	151900474	2	1	727	1	0	0	0	0	0	0	0	1	9233	1277	45	2		2	MAGEA12	23	151900474	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	13201914	151900474	3370086	921	64627										
FLNA	0	genome.wustl.edu	37	chrX	153594507	153594507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623362445414847	571	6.47046619831952e-231	4.11101471482975	4.35848317297227	3.95399674036151	1.07869482086161e-08	2.10992706960531e-06	432	ctgcagcggtatgtgctgtcGccccgggcctccagctgagg	15	14	0	1			TCGA-D8-A27G-01A-11D-A16D-09	TCGA-D8-A27G-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8bc172c-0986-481e-a4ce-54fa55db4871	4e47a193-cf64-45ab-afb0-0167661972a2	X	153594507	153594507	G	A	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.1314	p.G438	0.928	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	19	0	0	5	5	50	-	-	-	A	153594507	G	A	153594507	2	1	727	1	0	0	0	0	0	0	0	1	5979	1074	38	1		1	FLNA	23	153594507	Silent	SNP	G	TCGA-D8-A27G-01A-11D-A16D-09	1694033	153594507	1676053	922	64628										
FBXO42	0	genome.wustl.edu	37	chr1	16577968	16577968	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gtccaaagaagagccacccaCagctgccgttcctggagaca	10	14	0	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	16577968	16577968	C	G	SNP	FBXO42	ENST00000375592	human	ensembl	69_37n	-1	known	missense	c.1351	p.V451L	0.998	NULL	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO42	HGNC	ENSG00000037637	29	0	0	14	5	26.32	-	-	-	G	16577968	C	G	16577968	3	3	728	1	0	0	0	0	1	0	0	0	5797	478	17	4	806	4	FBXO42	1	16577968	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		16577968	232672653	1	64629										
GALE	0	genome.wustl.edu	37	chr1	24123024	24123024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcccagaggccttctccataGcctggaccatctgcagcact	8	16	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	24123024	24123024	G	A	SNP	GALE	ENST00000374497	human	ensembl	69_37n	-1	known	missense	c.848	p.A283V	1.000	tigrfam_GalE	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,prints_Nuc_sugar_epim,tigrfam_GalE	-	no_errors	GALE	HGNC	ENSG00000117308	18	0	0	22	12	35.29	-	-	-	A	24123024	G	A	24123024	3	1	728	1	0	0	0	0	1	0	0	0	6252	971	34	4	210	4	GALE	1	24123024	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	7545056	24123024	225127597	2	64630										
SYF2	0	genome.wustl.edu	37	chr1	25554645	25554645	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agggtttttcctcttcttttTcctctcccatctttctgcat	4	13	5	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	25554645	25554645	T	G	SNP	SYF2	ENST00000236273	human	ensembl	69_37n	-1	known	missense	c.340	p.K114Q	1.000	pfam_mRNA_splic_SYF2	pfam_mRNA_splic_SYF2	-	no_errors	SYF2	HGNC	ENSG00000117614	142	0	0	61	46	42.99	-	-	-	G	25554645	T	G	25554645	3	3	728	1	0	0	0	0	1	0	0	0	15529	1792	62	5	407	5	SYF2	1	25554645	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	1431621	25554645	223695976	3	64631										
CSF3R	0	genome.wustl.edu	37	chr1	36941196	36941196	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gatggctgcagttctgcttgAtgatgcaggaggctgtgatg	16	6	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	36941196	36941196	A	T	SNP	CSF3R	ENST00000373103	human	ensembl	69_37n	-1	known	missense	c.143	p.I48N	0.954	pfam_IgC2-like_lig-bd	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535	34	0	0	15	11	42.31	-	-	-	T	36941196	A	T	36941196	3	4	728	1	0	0	0	0	1	0	0	0	3969	333	12	5	2613	5	CSF3R	1	36941196	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	11386551	36941196	212309425	4	64632										
DPH2	0	genome.wustl.edu	37	chr1	44437957	44437957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcaaatgatcatggaagcttGgctctgaccccacggcccca	9	14	3	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	44437957	44437957	G	T	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	1	known	missense	c.1296	p.L432F	0.001	tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	64	0	0	31	19	38	-	-	-	T	44437957	G	T	44437957	3	4	728	1	0	0	0	0	1	0	0	0	4755	1339	47	4	1314	4	DPH2	1	44437957	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	7496761	44437957	204812664	5	64633										
SLC35D1	0	genome.wustl.edu	37	chr1	67486085	67486085	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	actattgtagttgtaagagcAgaattatactgcgtgcagag	11	5	0	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	67486085	67486085	A	C	SNP	SLC35D1	ENST00000235345	human	ensembl	69_37n	-1	known	silent	c.843	p.S281	1.000	pfam_DUF250	pfam_DUF250	-	no_errors	SLC35D1	HGNC	ENSG00000116704	84	0	0	55	31	36.05	-	-	-	C	67486085	A	C	67486085	2	2	728	1	0	0	0	0	0	0	0	1	14670	175	7	5		5	SLC35D1	1	67486085	Silent	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	23048128	67486085	181764536	6	64634										
GJA5	0	genome.wustl.edu	37	chr1	147230977	147230977	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cttctctgccaccgggtactCgtaagagccagagccccgga	11	15	1	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	147230977	147230977	C	G	SNP	GJA5	ENST00000271348	human	ensembl	69_37n	-1	known	missense	c.370	p.E124Q	0.926	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140	28	0	0	21	4	15.38	-	-	-	G	147230977	C	G	147230977	3	3	728	1	0	0	0	0	1	0	0	0	6456	893	31	3	710	3	GJA5	1	147230977	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	79744892	147230977	102019644	7	64635										
FLG	0	genome.wustl.edu	37	chr1	152282807	152282807	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctggggtgtggtgtggctgtGatggtaccctgagtgtccag	18	7	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	152282807	152282807	G	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.4555	p.H1519Y	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	198	0	0	96	44	31.43	-	-	-	A	152282807	G	A	152282807	3	1	728	1	0	0	0	0	1	0	0	0	5968	1290	45	2	7634	2	FLG	1	152282807	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	5051830	152282807	96967814	8	64636										
MRPL24	0	genome.wustl.edu	37	chr1	156707244	156707244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tccttgatccccatggcctcCatcacctcctcctgcagtgt	6	18	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	156707244	156707244	C	G	SNP	MRPL24	ENST00000361531	human	ensembl	69_37n	-1	known	missense	c.597	p.M199I	1.000	NULL	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314	84	0	0	49	32	39.51	-	-	-	G	156707244	C	G	156707244	3	3	728	1	0	0	0	0	1	0	0	0	9862	594	21	4	57	4	MRPL24	1	156707244	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	4424437	156707244	92543377	9	64637										
OR10R2	0	genome.wustl.edu	37	chr1	158450097	158450097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tgatgggttatgatcgctatGctgccatttgtcaccctctg	10	10	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	158450097	158450097	G	T	SNP	OR10R2	ENST00000368152	human	ensembl	69_37n	1	known	missense	c.430	p.A144S	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965	120	0	0	47	37	44.05	-	-	-	T	158450097	G	T	158450097	3	4	728	1	0	0	0	0	1	0	0	0	10990	1319	46	4	432	4	OR10R2	1	158450097	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	1742853	158450097	90800524	10	64638										
ATP1A4	0	genome.wustl.edu	37	chr1	160129216	160129216	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	caggtggacaactcatccttGactggggagtcagaacccca	11	12	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	160129216	160129216	G	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.678	p.L226F	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	65	0	0	23	22	48.89	-	-	-	C	160129216	G	C	160129216	3	2	728	1	0	0	0	0	1	0	0	0	1135	1281	45	2	700	2	ATP1A4	1	160129216	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	1679119	160129216	89121405	11	64639										
TNR	0	genome.wustl.edu	37	chr1	175375432	175375432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ccctctccagcatctcgatcCggctcagcagctcctgcagc	8	19	3	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	175375432	175375432	C	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.419	p.R140Q	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	120	0	0	33	27	45	-	-	-	T	175375432	C	T	175375432	3	4	728	1	0	0	0	0	1	0	0	0	16433	652	23	1	3741	1	TNR	1	175375432	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	15246216	175375432	73875189	12	64640										
CACNA1E	0	genome.wustl.edu	37	chr1	181765933	181765933	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gacccaggctgactgggagtCcccagagcgccgtcaatcca	12	15	1	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	181765933	181765933	C	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.6338	p.S2113Y	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	15	0	0	14	10	41.67	-	-	-	A	181765933	C	A	181765933	3	1	728	1	0	0	0	0	1	0	0	0	2567	855	30	2	6391	2	CACNA1E	1	181765933	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	6390501	181765933	67484688	13	64641										
ATP2B4	0	genome.wustl.edu	37	chr1	203683364	203683364	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcactggtgatggcacaaatGacgggcctgctctgaagaaa	12	9	2	4			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	203683364	203683364	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.2365	p.D789N	1.000	pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	119	0	0	71	19	21.11	-	-	-	A	203683364	G	A	203683364	3	1	728	1	0	0	0	0	1	0	0	0	1146	1290	45	2	2419	2	ATP2B4	1	203683364	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	21917431	203683364	45567257	14	64642										
MAPKAPK2	0	genome.wustl.edu	37	chr1	206904486	206904486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcctcctgttgatgcaggctGtgtgggtatccccccttcta	10	13	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	1	206904486	206904486	G	A	SNP	MAPKAPK2	ENST00000367103	human	ensembl	69_37n	1	known	silent	c.771	p.L257	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889	50	0	0	51	14	21.54	-	-	-	A	206904486	G	A	206904486	2	1	728	1	0	0	0	0	0	0	0	1	9360	1364	48	4		4	MAPKAPK2	1	206904486	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	3221122	206904486	42346135	15	64643										
ROCK2	0	genome.wustl.edu	37	chr2	11354992	11354992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aatcattaattatctctgatCcatgggttcgatccctcctt	5	11	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	11354992	11354992	C	A	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.1910	p.G637V	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	69	0	0	26	26	50	-	-	-	A	11354992	C	A	11354992	3	1	728	1	0	0	0	0	1	0	0	0	13604	855	30	2	2328	2	ROCK2	2	11354992	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		11354992	231844381	16	64644										
NBAS	0	genome.wustl.edu	37	chr2	15326973	15326973	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	acatctggttagcatcactgTagctagtctcacccatggat	8	11	3	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	15326973	15326973	T	C	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6604	p.T2202A	0.019	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	130	0	0	61	28	31.46	-	-	-	C	15326973	T	C	15326973	3	2	728	1	0	0	0	0	1	0	0	0	10258	1638	57	5	523	5	NBAS	2	15326973	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	3971981	15326973	227872400	17	64645										
LHCGR	0	genome.wustl.edu	37	chr2	48936098	48936098	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tctactcacaaggttttcggCcctgtggccccacggaaggc	11	14	2	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	48936098	48936098	C	A	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	silent	c.669	p.G223	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	78	0	0	45	18	28.57	-	-	-	A	48936098	C	A	48936098	2	1	728	1	0	0	0	0	0	0	0	1	8817	726	26	4		4	LHCGR	2	48936098	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	33609125	48936098	194263275	18	64646										
WDR33	0	genome.wustl.edu	37	chr2	128471382	128471382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gcccctcaaattcacgtaacCggtggccaaagcgcttgtca	9	14	3	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	128471382	128471382	C	T	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.3083	p.R1028Q	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	38	0	0	38	8	17.39	-	-	-	T	128471382	C	T	128471382	3	4	728	1	0	0	0	0	1	0	0	0	17384	652	23	1	947	1	WDR33	2	128471382	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	79535284	128471382	114727991	19	64647										
TUBA3E	0	genome.wustl.edu	37	chr2	130949653	130949653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	acggcccgctgcaccttggcCaggtctcccccggggaccac	12	19	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	130949653	130949653	C	T	SNP	TUBA3E	ENST00000312988	human	ensembl	69_37n	-1	known	silent	c.1104	p.L368	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	58	0	0	14	39	73.58	-	-	-	T	130949653	C	T	130949653	2	4	728	1	0	0	0	0	0	0	0	1	16845	581	21	4		4	TUBA3E	2	130949653	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	2478271	130949653	112249720	20	64648										
POTEE	0	genome.wustl.edu	37	chr2	132022031	132022031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	accaacacagtgctgtctggCggcaccaccatgtaccctgg	10	15	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	13	0	0	3	2	40	-	-	-	T	132022031	C	T	132022031	2	4	728	1	0	0	0	0	0	0	0	1	12338	755	27	1		1	POTEE	2	132022031	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	1072378	132022031	111177342	21	64649										
NCKAP5	0	genome.wustl.edu	37	chr2	133540494	133540494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tggtaatgatctgagtgcggActttgcctgacccttcgatg	12	9	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	133540494	133540494	A	G	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.3890	p.V1297A	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	41	0	0	21	8	27.59	-	-	-	G	133540494	A	G	133540494	3	3	728	1	0	0	0	0	1	0	0	0	10295	275	10	5	1867	5	NCKAP5	2	133540494	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	1518463	133540494	109658879	22	64650										
NEB	0	genome.wustl.edu	37	chr2	152543948	152543948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctcacatcactctggtttttGgctgtcttcaaggagtgcag	10	10	5	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	152543948	152543948	G	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.2622	p.A874	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	153	0	0	146	40	21.51	-	-	-	A	152543948	G	A	152543948	2	1	728	1	0	0	0	0	0	0	0	1	10374	1335	47	4		4	NEB	2	152543948	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	19003454	152543948	90655425	23	64651										
HOXD13	0	genome.wustl.edu	37	chr2	176959403	176959403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agtgaccatttggtttcagaAccgaagagtgaaggacaaga	12	6	1	5			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	176959403	176959403	A	C	SNP	HOXD13	ENST00000392539	human	ensembl	69_37n	1	putative	missense	c.977	p.N326T	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXD13	HGNC	ENSG00000128714	61	0	0	32	18	36	-	-	-	C	176959403	A	C	176959403	3	2	728	1	0	0	0	0	1	0	0	0	7373	43	2	5	983	5	HOXD13	2	176959403	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	24415455	176959403	66239970	24	64652										
TTN	0	genome.wustl.edu	37	chr2	179445095	179445095	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcctttttaccacagctgttCtccagggttaagatatattt	6	9	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	179445095	179445095	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.59307	p.E19769D	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	139	0	0	81	44	35.2	-	-	-	G	179445095	C	G	179445095	3	3	728	1	0	0	0	0	1	0	0	0	16832	912	32	2	41152	2	TTN	2	179445095	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	2485692	179445095	63754278	25	64653										
ITGAV	0	genome.wustl.edu	37	chr2	187455104	187455104	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cgacggctgcgcctcggtccCcgcggcctcccgcttcttct	11	20	2	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	187455104	187455104	C	G	SNP	ITGAV	ENST00000261023	human	ensembl	69_37n	1	known	silent	c.39	p.P13	0.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	19	0	0	11	10	47.62	-	-	-	G	187455104	C	G	187455104	2	3	728	1	0	0	0	0	0	0	0	1	7942	610	22	4		4	ITGAV	2	187455104	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	8010009	187455104	55744269	26	64654										
FAM124B	0	genome.wustl.edu	37	chr2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agtatttcacaggactggccCgttcagacacctgaaagagc	10	11	2	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	225266346	225266346	C	G	SNP	FAM124B	ENST00000409685	human	ensembl	69_37n	-1	known	missense	c.140	p.R47P	0.999	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019	24	0	0	3	27	90	-	-	-	G	225266346	C	G	225266346	3	3	728	1	0	0	0	0	1	0	0	0	5466	652	23	3	1326	3	FAM124B	2	225266346	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	37811242	225266346	17933027	27	64655										
GPR55	0	genome.wustl.edu	37	chr2	231774802	231774802	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	atgttcatgcggaattctttGatgacaaagtagtagcagaa	10	5	2	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	231774802	231774802	G	A	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	silent	c.876	p.I292	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	35	0	0	18	10	35.71	-	-	-	A	231774802	G	A	231774802	2	1	728	1	0	0	0	0	0	0	0	1	6749	1280	45	2		2	GPR55	2	231774802	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	6508456	231774802	11424571	28	64656										
HJURP	0	genome.wustl.edu	37	chr2	234758445	234758445	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gcggtgcgagggaagctcagGaccccaggctgcagcttgca	16	12	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	2	234758445	234758445	G	C	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.301	p.P101A	0.000	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	27	0	0	14	7	33.33	-	-	-	C	234758445	G	C	234758445	3	2	728	1	0	0	0	0	1	0	0	0	7240	1174	41	2	1969	2	HJURP	2	234758445	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	2983643	234758445	8440928	29	64657										
ZNF445	0	genome.wustl.edu	37	chr3	44488277	44488277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tggagtccagtgagcctggaGctctggctgcaagcttcttt	13	10	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	44488277	44488277	G	T	SNP	ZNF445	ENST00000396077	human	ensembl	69_37n	-1	known	missense	c.2886	p.S962R	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	107	0	0	16	19	54.29	-	-	-	T	44488277	G	T	44488277	3	4	728	1	0	0	0	0	1	0	0	0	18014	962	34	4	213	4	ZNF445	3	44488277	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		44488277	153534153	30	64658										
ZXDC	0	genome.wustl.edu	37	chr3	126191121	126191121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggttatgggaaaacagggcaCtcactgtgataaatgtcttc	11	7	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	126191121	126191121	C	G	SNP	ZXDC	ENST00000389709	human	ensembl	69_37n	-1	known	missense	c.935	p.S312T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476	54	0	0	33	8	19.51	-	-	-	G	126191121	C	G	126191121	3	3	728	1	0	0	0	0	1	0	0	0	18343	565	20	4	1683	4	ZXDC	3	126191121	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	81702844	126191121	71831309	31	64659										
KIAA1257	0	genome.wustl.edu	37	chr3	128707723	128707723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gtctgttttagggtgtttctTatatttttcaatcaaacttg	7	5	4	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	128707723	128707723	T	C	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.301	p.K101E	0.002	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	79	0	0	51	20	28.17	-	-	-	C	128707723	T	C	128707723	3	2	728	1	0	0	0	0	1	0	0	0	8270	1763	61	5	952	5	KIAA1257	3	128707723	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	2516602	128707723	69314707	32	64660										
KY	0	genome.wustl.edu	37	chr3	134327635	134327635	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cttgttgtctgggaagtggtCctcgatgaacagtgcagggt	15	7	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	134327635	134327635	C	G	SNP	KY	ENST00000423778	human	ensembl	69_37n	-1	known	missense	c.946	p.D316H	1.000	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611	94	0	0	39	34	46.58	-	-	-	G	134327635	C	G	134327635	3	3	728	1	0	0	0	0	1	0	0	0	8640	855	30	2	1047	2	KY	3	134327635	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	5619912	134327635	63694795	33	64661										
XRN1	0	genome.wustl.edu	37	chr3	142137414	142137414	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tattgtctaaactcagtttcAaataggtcatcatcttcagt	5	8	7	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	142137414	142137414	A	T	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.1278	p.F426L	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	100	0	0	106	28	20.9	-	-	-	T	142137414	A	T	142137414	3	4	728	1	0	0	0	0	1	0	0	0	17556	127	5	5	3966	5	XRN1	3	142137414	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	7809779	142137414	55885016	34	64662										
SLITRK3	0	genome.wustl.edu	37	chr3	164908611	164908611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gaagcatctcagctatggaaGgtttcatcgttcgtggttga	12	7	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	164908611	164908611	G	A	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.8	p.P3L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	68	0	0	65	21	24.42	-	-	-	A	164908611	G	A	164908611	3	1	728	1	0	0	0	0	1	0	0	0	14833	1000	35	4	2929	4	SLITRK3	3	164908611	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	22771197	164908611	33113819	35	64663										
KCNMB3	0	genome.wustl.edu	37	chr3	178968569	178968569	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agaatggttgttccgagcaaGaagaacattaggactgagaa	12	5	0	4			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	178968569	178968569	G	A	SNP	KCNMB3	ENST00000314235	human	ensembl	69_37n	-1	known	silent	c.222	p.F74	1.000	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121	72	0	0	62	15	19.48	-	-	-	A	178968569	G	A	178968569	2	1	728	1	0	0	0	0	0	0	0	1	8130	933	33	2		2	KCNMB3	3	178968569	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	14059958	178968569	19053861	36	64664										
ATP13A5	0	genome.wustl.edu	37	chr3	193016987	193016987	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tggtaatttccaaagagttgTagttgctgaaaaagaaacaa	9	4	0	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	193016987	193016987	T	C	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	silent	c.2781	p.L927	0.942	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	63	0	0	9	14	60.87	-	-	-	C	193016987	T	C	193016987	2	2	728	1	0	0	0	0	0	0	0	1	1131	1625	57	5		5	ATP13A5	3	193016987	Silent	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	14048418	193016987	5005443	37	64665										
MFI2	0	genome.wustl.edu	37	chr3	196735702	196735702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gaaggcgccgcggtagccgtAataccgctcctggctgttgc	14	13	0	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	3	196735702	196735702	A	G	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.1660	p.Y554H	1.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	50	0	0	18	25	58.14	-	-	-	G	196735702	A	G	196735702	3	3	728	1	0	0	0	0	1	0	0	0	9593	362	13	5	576	5	MFI2	3	196735702	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	3718715	196735702	1286728	38	64666										
GBA3	0	genome.wustl.edu	37	chr4	22748975	22748975	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	taaaaaatggggttactcccAttgtgaccctctaccacttt	6	11	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	4	22748975	22748975	A	G	SNP	GBA3	ENST00000508166	human	ensembl	69_37n	1	known	missense	c.343	p.I115V	0.929	NULL	NULL	-	pseudogene	GBA3	HGNC	ENSG00000249948	41	0	0	23	25	52.08	-	-	-	G	22748975	A	G	22748975	3	3	728	1	0	0	0	0	1	0	0	0	6318	217	8	5	353	5	GBA3	4	22748975	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09		22748975	168405301	39	64667										
SCARB2	0	genome.wustl.edu	37	chr4	77100814	77100814	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	taggctttcaacatggcctcGatgatctccctgaggaagtg	11	10	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	4	77100814	77100814	G	C	SNP	SCARB2	ENST00000264896	human	ensembl	69_37n	-1	known	missense	c.468	p.I156M	0.974	pfam_CD36,prints_LimpII	pfam_CD36,superfamily_NA-bd_OB-fold-like,prints_LimpII,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB2	HGNC	ENSG00000138760	48	0	0	4	12	75	-	-	-	C	77100814	G	C	77100814	3	2	728	1	0	0	0	0	1	0	0	0	13969	1048	37	3	1004	3	SCARB2	4	77100814	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	54351839	77100814	114053462	40	64668										
TRPC3	0	genome.wustl.edu	37	chr4	122825607	122825607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	atttgtgatcatatttgagcAcaacggaagtcacttcagac	8	8	3	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	4	122825607	122825607	A	G	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	missense	c.2123	p.V708A	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	72	0	0	39	20	33.9	-	-	-	G	122825607	A	G	122825607	3	3	728	1	0	0	0	0	1	0	0	0	16675	159	6	5	662	5	TRPC3	4	122825607	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	45724793	122825607	68328669	41	64669										
C4orf29	0	genome.wustl.edu	37	chr4	128938562	128938562	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cgacctttttgtgatgggagGagctcttgttttagaatctg	12	6	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	4	128938562	128938562	G	C	SNP	C4orf29	ENST00000398965	human	ensembl	69_37n	1	known	missense	c.515	p.G172A	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074	70	0	0	40	34	45.95	-	-	-	C	128938562	G	C	128938562	3	2	728	1	0	0	0	0	1	0	0	0	2280	1174	41	2	541	2	C4orf29	4	128938562	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	6112955	128938562	62215714	42	64670										
ODZ3	0	genome.wustl.edu	37	chr4	183603098	183603098	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cagaccagtgctccggccacGgaacgtatcttcaagaaagt	10	12	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	4	183603098	183603098	G	T	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	nonsense	c.1966	p.G656*	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	47	0	0	11	8	42.11	-	-	-	T	183603098	G	T	183603098	4	4	728	1	0	0	0	0	0	1	0	0	10909	1117	39	3	2004	3	ODZ3	4	183603098	Nonsense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	54664536	183603098	7551178	43	64671										
KIAA0947	0	genome.wustl.edu	37	chr5	5444434	5444434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agaagctaaggtgaagaagcTgcaaggtaagtggcactatt	13	5	0	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	5	5444434	5444434	T	C	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.419	p.L140P	1.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	169	0	0	162	47	22.49	-	-	-	C	5444434	T	C	5444434	3	2	728	1	0	0	0	0	1	0	0	0	8254	1580	55	5	445	5	KIAA0947	5	5444434	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09		5444434	175470826	44	64672										
KIAA0947	0	genome.wustl.edu	37	chr5	5464629	5464629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cgaagcacgcacttcctgtgCctggccgactcccaccctgt	9	18	0	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	5	5464629	5464629	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.5182	p.P1728S	1.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	29	0	0	20	15	42.86	-	-	-	T	5464629	C	T	5464629	3	4	728	1	0	0	0	0	1	0	0	0	8254	739	26	4	5232	4	KIAA0947	5	5464629	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	20195	5464629	175450631	45	64673										
SKP2	0	genome.wustl.edu	37	chr5	36177372	36177372	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tatcactcagtcggtgctatGatataatacctgaaacttta	6	8	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	5	36177372	36177372	G	C	SNP	SKP2	ENST00000274255	human	ensembl	69_37n	1	known	missense	c.1039	p.D347H	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	SKP2	HGNC	ENSG00000145604	107	0	0	99	29	22.66	-	-	-	C	36177372	G	C	36177372	3	2	728	1	0	0	0	0	1	0	0	0	14451	1290	45	2	1073	2	SKP2	5	36177372	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	30712743	36177372	144737888	46	64674										
FCHSD1	0	genome.wustl.edu	37	chr5	141029054	141029054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gagtcgggtttggcccccagCcacggtggcatccagcaggc	15	14	0	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	5	141029054	141029054	C	A	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	missense	c.283	p.A95S	0.982	pfam_FCH,smart_FCH	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	22	0	0	11	11	50	-	-	-	A	141029054	C	A	141029054	3	1	728	1	0	0	0	0	1	0	0	0	5835	739	26	4	1853	4	FCHSD1	5	141029054	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	104851682	141029054	39886206	47	64675										
PFDN6	0	genome.wustl.edu	37	chr6	33257979	33257979	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aaatccatgtcggggaggcaGaaacttgaagcacaactaac	10	9	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	6	33257979	33257979	G	C	SNP	PFDN6	ENST00000374606	human	ensembl	69_37n	1	known	missense	c.93	p.Q31H	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN6	HGNC	ENSG00000204220	101	0	0	44	44	49.44	-	-	-	C	33257979	G	C	33257979	3	2	728	1	0	0	0	0	1	0	0	0	11833	933	33	2	99	2	PFDN6	6	33257979	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		33257979	137857088	48	64676										
MDN1	0	genome.wustl.edu	37	chr6	90388361	90388361	+	Frame_Shift_Del	DEL	T	T	-													0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aggtctgacaaagctcgctgTttttgcatgagaatgtgctt							TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	6	90388361	90388361	T	-	DEL	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	frame_shift_del	c.12369	p.K4123fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	88	0	0	51	26	33.77	-	-	-	-	90388361	T	-	90388361	7	5	728	1	0	1	0	1	0	0	0	0	9486	1722	60	0	4533	0	MDN1	6	90388361	Frame_Shift_Del	DEL	T	TCGA-D8-A27H-01A-11D-A16D-09	57130382	90388361	80726706	49	64677										
RNF146	0	genome.wustl.edu	37	chr6	127608175	127608175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aaaaagaacactgaaatgttAattgctggctttctgtatgt	8	5	1	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	6	127608175	127608175	A	C	SNP	RNF146	ENST00000368314	human	ensembl	69_37n	1	known	missense	c.417	p.L139F	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518	39	0	0	20	10	33.33	-	-	-	C	127608175	A	C	127608175	3	2	728	1	0	0	0	0	1	0	0	0	13534	359	13	5	416	5	RNF146	6	127608175	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	37219814	127608175	43506892	50	64678										
SYNE1	0	genome.wustl.edu	37	chr6	152686119	152686119	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctggtcactatcattttcatCtgaatctctttttcctgttt	4	10	5	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	6	152686119	152686119	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.10008	p.Q3336H	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	97	0	0	63	8	11.27	-	-	-	G	152686119	C	G	152686119	3	3	728	1	0	0	0	0	1	0	0	0	15537	912	32	2	16794	2	SYNE1	6	152686119	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	25077944	152686119	18428948	51	64679										
AMPH	0	genome.wustl.edu	37	chr7	38424487	38424487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggcaaggtctctgtactgaaGccagtctgattccttcactc	9	12	3	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	7	38424487	38424487	G	A	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	missense	c.2020	p.L674F	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin_1	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	85	0	0	49	30	37.97	-	-	-	A	38424487	G	A	38424487	3	1	728	1	0	0	0	0	1	0	0	0	588	971	34	4	71	4	AMPH	7	38424487	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		38424487	120714176	52	64680										
ACTL6B	0	genome.wustl.edu	37	chr7	100244378	100244378	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tccggcctggcctcaccgggCgaatatcaatgtcacacatg	10	14	3	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	7	100244378	100244378	C	A	SNP	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	missense	c.1013	p.R338L	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	9	0	0	6	7	53.85	-	-	-	A	100244378	C	A	100244378	3	1	728	1	0	0	0	0	1	0	0	0	199	768	27	3	283	3	ACTL6B	7	100244378	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	61819891	100244378	58894285	53	64681										
RELN	0	genome.wustl.edu	37	chr7	103183194	103183194	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ttacctagcatgtgataaatCcaggtctcgtgtcatcaaca	7	10	3	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	7	103183194	103183194	C	G	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.6655	p.D2219H	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	73	0	0	23	12	34.29	-	-	-	G	103183194	C	G	103183194	3	3	728	1	0	0	0	0	1	0	0	0	13303	855	30	2	3819	2	RELN	7	103183194	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	2938816	103183194	55955469	54	64682										
UBN2	0	genome.wustl.edu	37	chr7	138968722	138968722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tatggtgtcacagatctccaCgcagggtttcaaatctccct	8	12	4	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	7	138968722	138968722	C	T	SNP	UBN2	ENST00000473989	human	ensembl	69_37n	1	known	missense	c.3071	p.T1024M	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	55	0	0	28	26	48.15	-	-	-	T	138968722	C	T	138968722	3	4	728	1	0	0	0	0	1	0	0	0	16990	536	19	1	3129	1	UBN2	7	138968722	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	35785528	138968722	20169941	55	64683										
DPP6	0	genome.wustl.edu	37	chr7	154561218	154561218	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aatgattcccgtgtccccatCatggagctcccaacttacac	6	15	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	7	154561218	154561218	C	T	SNP	DPP6	ENST00000377770	human	ensembl	69_37n	1	known	silent	c.975	p.I325	0.168	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	28	0	0	20	12	37.5	-	-	-	T	154561218	C	T	154561218	2	4	728	1	0	0	0	0	0	0	0	1	4765	816	29	2		2	DPP6	7	154561218	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	15592496	154561218	4577445	56	64684										
CYP7A1	0	genome.wustl.edu	37	chr8	59407066	59407066	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	acataacaagtatacccaccTaatactggcaggtcattcag	6	11	2	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	8	59407066	59407066	T	G	SNP	CYP7A1	ENST00000301645	human	ensembl	69_37n	-1	known	missense	c.1038	p.L346F	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910	113	0	0	56	35	38.46	-	-	-	G	59407066	T	G	59407066	3	3	728	1	0	0	0	0	1	0	0	0	4227	1536	53	5	488	5	CYP7A1	8	59407066	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09		59407066	86956956	57	64685										
FABP12	0	genome.wustl.edu	37	chr8	82441695	82441695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ttgttttgtggccacctggcGtgatttcctcaaactcttct	8	11	3	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	8	82441695	82441695	G	A	SNP	FABP12	ENST00000360464	human	ensembl	69_37n	-1	known	missense	c.224	p.T75M	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP12	HGNC	ENSG00000197416	115	0	0	93	29	23.77	-	-	-	A	82441695	G	A	82441695	3	1	728	1	0	0	0	0	1	0	0	0	5396	1145	40	1	208	1	FABP12	8	82441695	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	23034629	82441695	63922327	58	64686										
GLDC	0	genome.wustl.edu	37	chr9	6592147	6592147	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tttttattttacttactgcaGatgactcacaaccaaagatc	4	9	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	9	6592147	6592147	G	C	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.1478	p.S493C	1.000	tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	58	0	0	49	8	14.04	-	-	-	C	6592147	G	C	6592147	3	2	728	1	0	0	0	0	1	0	0	0	6485	942	33	2	1644	2	GLDC	9	6592147	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		6592147	134621284	59	64687										
APBA1	0	genome.wustl.edu	37	chr9	72131068	72131068	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	acctcctcgatggcctccttGatgtccttgatggccagcga	10	14	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	9	72131068	72131068	G	C	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	missense	c.1059	p.I353M	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	18	0	0	9	4	30.77	-	-	-	C	72131068	G	C	72131068	3	2	728	1	0	0	0	0	1	0	0	0	757	1280	45	2	1502	2	APBA1	9	72131068	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	65538921	72131068	69082363	60	64688										
TMEM2	0	genome.wustl.edu	37	chr9	74345042	74345042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tacacatggagttgttcctaTcggtgggcaggagagtaccc	13	9	0	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	9	74345042	74345042	T	G	SNP	TMEM2	ENST00000377044	human	ensembl	69_37n	-1	known	missense	c.1901	p.D634A	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	56	0	0	38	20	34.48	-	-	-	G	74345042	T	G	74345042	3	3	728	1	0	0	0	0	1	0	0	0	16216	1435	50	5	2314	5	TMEM2	9	74345042	Missense_Mutation	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	2213974	74345042	66868389	61	64689										
RGS3	0	genome.wustl.edu	37	chr9	116226093	116226093	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gtgggacgccatggagcgctCcctgcaccgcgtctccctcg	13	17	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	9	116226093	116226093	C	G	SNP	RGS3	ENST00000317613	human	ensembl	69_37n	1	known	missense	c.11	p.S4C	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	RGS3	HGNC	ENSG00000138835	8	0	0	3	4	57.14	-	-	-	G	116226093	C	G	116226093	3	3	728	1	0	0	0	0	1	0	0	0	13390	855	30	2	440	2	RGS3	9	116226093	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	41881051	116226093	24987338	62	64690										
PDCD4	0	genome.wustl.edu	37	chr10	112650367	112650367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tatgtctaaaggtggaaagcGtaaagatagtgtgtggggct	15	3	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	10	112650367	112650367	G	A	SNP	PDCD4	ENST00000280154	human	ensembl	69_37n	1	known	missense	c.929	p.R310H	1.000	superfamily_ARM-type_fold	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593	136	0	0	55	28	33.73	-	-	-	A	112650367	G	A	112650367	3	1	728	1	0	0	0	0	1	0	0	0	11694	1145	40	1	969	1	PDCD4	10	112650367	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		112650367	22884380	63	64691										
ANO9	0	genome.wustl.edu	37	chr11	418935	418935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcaatcccatcagggtcctgGaagtccttggtgtggaagac	12	10	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	11	418935	418935	G	T	SNP	ANO9	ENST00000332826	human	ensembl	69_37n	-1	known	missense	c.1989	p.F663L	0.962	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	52	0	0	14	12	46.15	-	-	-	T	418935	G	T	418935	3	4	728	1	0	0	0	0	1	0	0	0	703	1165	41	2	371	2	ANO9	11	418935	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		418935	134587581	64	64692										
CCDC83	0	genome.wustl.edu	37	chr11	85606377	85606377	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	aagatactagaaagaaaataAtcaaggaaactttgttgcaa	7	4	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	11	85606377	85606377	A	C	SNP	CCDC83	ENST00000280245	human	ensembl	69_37n	1	known	missense	c.553	p.I185L	0.291	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676	29	0	0	28	9	24.32	-	-	-	C	85606377	A	C	85606377	3	2	728	1	0	0	0	0	1	0	0	0	2884	101	4	5	571	5	CCDC83	11	85606377	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	85187442	85606377	49400139	65	64693										
RNF214	0	genome.wustl.edu	37	chr11	117110556	117110556	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	attcagaggtaaacacagatCaagatattgaaaagaatttg	8	4	2	5			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	11	117110556	117110556	C	G	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	missense	c.658	p.Q220E	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257	56	0	0	14	34	70.83	-	-	-	G	117110556	C	G	117110556	3	3	728	1	0	0	0	0	1	0	0	0	13564	827	29	2	668	2	RNF214	11	117110556	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	31504179	117110556	17895960	66	64694										
AEBP2	0	genome.wustl.edu	37	chr12	19653099	19653099	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	atcgagccatatgctttaacCtctcagctcatatagaaagt	6	10	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	12	19653099	19653099	C	G	SNP	AEBP2	ENST00000398864	human	ensembl	69_37n	1	known	missense	c.1243	p.L415V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	126	0	0	88	40	31.25	-	-	-	G	19653099	C	G	19653099	3	3	728	1	0	0	0	0	1	0	0	0	350	681	24	4	1261	4	AEBP2	12	19653099	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		19653099	114198796	67	64695										
BAZ2A	0	genome.wustl.edu	37	chr12	56995411	56995411	+	Nonsense_Mutation	SNP	G	G	A													0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggcggtgtgggggcagcattGcagggcatctgggctgagat							TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	12	56995411	56995411	G	A	SNP	BAZ2A	ENST00000547453	human	ensembl	69_37n	-1	putative	nonsense	c.1	p.Q1*	0.990	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BAZ2A	HGNC	ENSG00000076108	39	0	0	15	12	44.44	-	-	-	A	56995411	G	A	56995411	4	1	728	1	0	0	0	0	0	1	0	0	1335	1311	46	4	1761	4	BAZ2A	12	56995411	Nonsense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	37342312	56995411	76856484	68	64696	472	2								
BAZ2A	0	genome.wustl.edu	37	chr12	56995412	56995412	+	Missense_Mutation	SNP	C	C	A													0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gcggtgtgggggcagcattgCagggcatctgggctgagatg							TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	12	56995412	56995412	C	A	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.3995	p.C1332F	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	38	0	0	15	12	44.44	-	-	-	A	56995412	C	A	56995412	3	1	728	1	0	0	0	0	1	0	0	0	1335	710	25	4	1762	4	BAZ2A	12	56995412	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	1	56995412	76856483	69	64697	472	2								
PPP1R12A	0	genome.wustl.edu	37	chr12	80226269	80226269	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcgagctgcttctatatcaaCccctgataaaataaaaatag	5	9	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	12	80226269	80226269	C	A	SNP	PPP1R12A	ENST00000261207	human	ensembl	69_37n	-1	known	missense	c.490	p.V164F	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272	64	0	0	37	18	32.73	-	-	-	A	80226269	C	A	80226269	3	1	728	1	0	0	0	0	1	0	0	0	12431	507	18	4	2690	4	PPP1R12A	12	80226269	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	23230857	80226269	53625626	70	64698										
UTP20	0	genome.wustl.edu	37	chr12	101693508	101693508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tccaagggaagaaacgaacaGtttccagtattggaccatct	9	9	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	12	101693508	101693508	G	A	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	silent	c.1479	p.Q493	0.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	34	0	0	31	8	20.51	-	-	-	A	101693508	G	A	101693508	2	1	728	1	0	0	0	0	0	0	0	1	17196	1020	36	4		4	UTP20	12	101693508	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	21467239	101693508	32158387	71	64699										
FRMD6	0	genome.wustl.edu	37	chr14	52187001	52187001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctactccagcagtgccatccAccgcaagctgaaaacctgca	7	16	0	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	14	52187001	52187001	A	C	SNP	FRMD6	ENST00000344768	human	ensembl	69_37n	1	known	missense	c.1253	p.H418P	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926	15	0	0	2	11	84.62	-	-	-	C	52187001	A	C	52187001	3	2	728	1	0	0	0	0	1	0	0	0	6103	159	6	5	1267	5	FRMD6	14	52187001	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09		52187001	55162539	72	64700										
THBS1	0	genome.wustl.edu	37	chr15	39886350	39886350	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ataggctggaaagatttcacCgcctacagatggcgtctcag	11	10	2	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	15	39886350	39886350	C	G	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	silent	c.3318	p.T1106	0.943	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	80	0	0	8	19	70.37	-	-	-	G	39886350	C	G	39886350	2	3	728	1	0	0	0	0	0	0	0	1	15948	639	23	3		3	THBS1	15	39886350	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		39886350	62645042	73	64701										
ZWILCH	0	genome.wustl.edu	37	chr15	66819708	66819708	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tctgctgttgaacttgttcaGgaatttctgaatggtgtatt	10	5	3	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	15	66819708	66819708	G	C	SNP	ZWILCH	ENST00000307897	human	ensembl	69_37n	1	known	missense	c.900	p.Q300H	1.000	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442	113	0	0	133	34	20.36	-	-	-	C	66819708	G	C	66819708	3	2	728	1	0	0	0	0	1	0	0	0	18339	991	35	4	934	4	ZWILCH	15	66819708	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	26933358	66819708	35711684	74	64702										
MMP25	0	genome.wustl.edu	37	chr16	3100510	3100510	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cccatctccggggacactcaCtttgacgatgaggagacctg	11	13	2	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	16	3100510	3100510	C	G	SNP	MMP25	ENST00000336577	human	ensembl	69_37n	1	known	missense	c.624	p.H208Q	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	26	0	0	11	5	31.25	-	-	-	G	3100510	C	G	3100510	3	3	728	1	0	0	0	0	1	0	0	0	9734	564	20	4	638	4	MMP25	16	3100510	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		3100510	87254243	75	64703										
CREBBP	0	genome.wustl.edu	37	chr16	3779066	3779066	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ttcaggctcacgggggccatCtggctccccggggtccccat	13	16	3	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	16	3779066	3779066	C	G	SNP	CREBBP	ENST00000262367	human	ensembl	69_37n	-1	known	missense	c.5982	p.Q1994H	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	21	0	0	9	14	60.87	-	-	-	G	3779066	C	G	3779066	3	3	728	1	0	0	0	0	1	0	0	0	3891	912	32	2	1350	2	CREBBP	16	3779066	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	678556	3779066	86575687	76	64704										
C16orf78	0	genome.wustl.edu	37	chr16	49412426	49412426	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	acgccgcctcctaccgaagcCtctatggagtggagcaaaag	11	13	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	16	49412426	49412426	C	G	SNP	C16orf78	ENST00000299191	human	ensembl	69_37n	1	known	missense	c.316	p.L106V	0.000	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152	37	0	0	10	12	54.55	-	-	-	G	49412426	C	G	49412426	3	3	728	1	0	0	0	0	1	0	0	0	1848	681	24	4	326	4	C16orf78	16	49412426	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	45633360	49412426	40942327	77	64705										
PLD2	0	genome.wustl.edu	37	chr17	4713241	4713241	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggtgccatctcatttgttcaGctctttgaccctggctttga	9	11	3	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	4713241	4713241	G	C	SNP	PLD2	ENST00000263088	human	ensembl	69_37n	1	known	missense	c.777	p.Q259H	1.000	smart_Pleckstrin_homology,pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219	94	0	0	17	22	56.41	-	-	-	C	4713241	G	C	4713241	3	2	728	1	0	0	0	0	1	0	0	0	12120	962	34	4	807	4	PLD2	17	4713241	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		4713241	76481969	78	64706										
ALOX15B	0	genome.wustl.edu	37	chr17	7945743	7945743	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggatgaaaagacagtggaagActtggagctcaatatcaaat	11	5	2	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	7945743	7945743	A	T	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	missense	c.506	p.D169V	0.959	superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	36	0	0	5	18	78.26	-	-	-	T	7945743	A	T	7945743	3	4	728	1	0	0	0	0	1	0	0	0	539	275	10	5	520	5	ALOX15B	17	7945743	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	3232502	7945743	73249467	79	64707										
MYH8	0	genome.wustl.edu	37	chr17	10318835	10318835	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcttctctccagtaactgcaAttgttgcaaagtattggatg	8	8	2	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	10318835	10318835	A	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.602	p.I201T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	110	0	0	24	32	57.14	-	-	-	G	10318835	A	G	10318835	3	3	728	1	0	0	0	0	1	0	0	0	10113	101	4	5	5347	5	MYH8	17	10318835	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	2373092	10318835	70876375	80	64708										
MYH1	0	genome.wustl.edu	37	chr17	10398288	10398288	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tctgcttcttcccacccttcAgggccagctgctcagcctca	7	18	5	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	10398288	10398288	A	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.5426	p.L1809Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	173	0	0	34	36	51.43	-	-	-	T	10398288	A	T	10398288	3	4	728	1	0	0	0	0	1	0	0	0	10101	188	7	5	409	5	MYH1	17	10398288	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	79453	10398288	70796922	81	64709										
CDRT1	0	genome.wustl.edu	37	chr17	15516055	15516055	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcggatgtttcacacgcatgCtcttcccgtcatctaccatt	6	14	4	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	15516055	15516055	C	G	SNP	CDRT1	ENST00000395906	human	ensembl	69_37n	-1	known	missense	c.1082	p.S361T	0.000	superfamily_F-box_dom_cyclin-like	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322	99	0	0	38	14	26.92	-	-	-	G	15516055	C	G	15516055	3	3	728	1	0	0	0	0	1	0	0	0	3203	797	28	4	1208	4	CDRT1	17	15516055	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	5117767	15516055	65679155	82	64710										
ACE	0	genome.wustl.edu	37	chr17	61568690	61568690	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agaagccaaccgacgggcggGaggtggtctgccacgcctcg	16	13	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	61568690	61568690	G	C	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.2860	p.E954Q	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	42	0	0	34	17	33.33	-	-	-	C	61568690	G	C	61568690	3	2	728	1	0	0	0	0	1	0	0	0	136	1175	41	2	3137	2	ACE	17	61568690	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	46052635	61568690	19626520	83	64711										
CD300LB	0	genome.wustl.edu	37	chr17	72518949	72518949	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tgttcccctggctcctcaggGaccctctgagaccccttcaa	8	17	3	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	72518949	72518949	G	T	SNP	CD300LB	ENST00000392621	human	ensembl	69_37n	-1	known	silent	c.645	p.V215	0.002	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LB	HGNC	ENSG00000178789	58	0	0	63	8	11.27	-	-	-	T	72518949	G	T	72518949	2	4	728	1	0	0	0	0	0	0	0	1	3028	1161	41	2		2	CD300LB	17	72518949	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	10950259	72518949	8676261	84	64712										
NPLOC4	0	genome.wustl.edu	37	chr17	79536048	79536048	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gacaaagagctcacctgtgtCtcacccaatacatcccggtt	7	14	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	79536048	79536048	C	G	SNP	NPLOC4	ENST00000374747	human	ensembl	69_37n	-1	known	missense	c.1443	p.E481D	1.000	pfam_NPL4,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446	87	0	0	62	22	26.19	-	-	-	G	79536048	C	G	79536048	3	3	728	1	0	0	0	0	1	0	0	0	10659	912	32	2	399	2	NPLOC4	17	79536048	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	7017099	79536048	1659162	85	64713										
METRNL	0	genome.wustl.edu	37	chr17	81043180	81043180	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gttaggaggcacagggcgtcGgacctgcacgagctgtctgg	17	10	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	17	81043180	81043180	G	C	SNP	METRNL	ENST00000320095	human	ensembl	69_37n	1	known	silent	c.537	p.S179	0.002	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845	21	0	0	20	11	35.48	-	-	-	C	81043180	G	C	81043180	2	2	728	1	0	0	0	0	0	0	0	1	9560	1103	39	3		3	METRNL	17	81043180	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	1507132	81043180	152030	86	64714										
MEP1B	0	genome.wustl.edu	37	chr18	29775426	29775426	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agatggcctcataccattccAtatgttctagaagatagctt	7	9	2	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	18	29775426	29775426	A	G	SNP	MEP1B	ENST00000269202	human	ensembl	69_37n	1	known	silent	c.228	p.P76	0.250	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434	109	0	0	73	62	45.93	-	-	-	G	29775426	A	G	29775426	2	3	728	1	0	0	0	0	0	0	0	1	9547	204	8	5		5	MEP1B	18	29775426	Silent	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09		29775426	48301822	87	64715										
ASXL3	0	genome.wustl.edu	37	chr18	31318818	31318818	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctgaggaggctgaaagtctaAccaattctcatgaagaaccc	9	10	2	4			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	18	31318818	31318818	A	C	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.1450	p.T484P	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	33	0	0	23	11	32.35	-	-	-	C	31318818	A	C	31318818	3	2	728	1	0	0	0	0	1	0	0	0	1072	43	2	5	1492	5	ASXL3	18	31318818	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	1543392	31318818	46758430	88	64716										
SERPINB13	0	genome.wustl.edu	37	chr18	61264417	61264417	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tacgcccagaagttcctgcaCagttcctttgtggcagtaac	9	12	0	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	18	61264417	61264417	C	G	SNP	SERPINB13	ENST00000344731	human	ensembl	69_37n	1	known	missense	c.996	p.H332Q	0.399	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641	46	0	0	26	20	43.48	-	-	-	G	61264417	C	G	61264417	3	3	728	1	0	0	0	0	1	0	0	0	14188	477	17	4	1022	4	SERPINB13	18	61264417	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	29945599	61264417	16812831	89	64717										
OR10H3	0	genome.wustl.edu	37	chr19	15852362	15852362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tggccacagtttggattgaaCgcagactccacacacccatg	9	13	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	19	15852362	15852362	C	T	SNP	OR10H3	ENST00000305892	human	ensembl	69_37n	1	known	missense	c.160	p.R54C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H3	HGNC	ENSG00000171936	220	0	0	76	38	33.33	-	-	-	T	15852362	C	T	15852362	3	4	728	1	0	0	0	0	1	0	0	0	10980	536	19	1	162	1	OR10H3	19	15852362	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		15852362	43276621	90	64718										
ZNF302	0	genome.wustl.edu	37	chr19	35174103	35174103	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gtgatcatgttattggaggaTggaaaagagccctggatgat	14	4	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	19	35174103	35174103	T	C	SNP	ZNF302	ENST00000423823	human	ensembl	69_37n	1	known	silent	c.174	p.D58	0.969	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF302	HGNC	ENSG00000089335	98	0	0	52	20	27.78	-	-	-	C	35174103	T	C	35174103	2	2	728	1	0	0	0	0	0	0	0	1	17928	1461	51	5		5	ZNF302	19	35174103	Silent	SNP	T	TCGA-D8-A27H-01A-11D-A16D-09	19321741	35174103	23954880	91	64719										
FCGBP	0	genome.wustl.edu	37	chr19	40376817	40376817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ggaggacagtggccctgtggGgctggagaggagcccacaga	19	9	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	19	40376817	40376817	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.11605	p.P3869S	0.001	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	52	0	0	35	4	10.26	-	-	-	A	40376817	G	A	40376817	3	1	728	1	0	0	0	0	1	0	0	0	5824	1232	43	4	4664	4	FCGBP	19	40376817	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	5202714	40376817	18752166	92	64720										
CEACAM16	0	genome.wustl.edu	37	chr19	45206762	45206762	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	atgcggggcccacactcagcGtgtcatacctggtggccagc	13	14	2	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	19	45206762	45206762	G	A	SNP	CEACAM16	ENST00000405314	human	ensembl	69_37n	1	known	missense	c.181	p.V61M	0.541	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM16	HGNC	ENSG00000213892	15	0	0	16	5	23.81	-	-	-	A	45206762	G	A	45206762	3	1	728	1	0	0	0	0	1	0	0	0	3217	1145	40	1	187	1	CEACAM16	19	45206762	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	4829945	45206762	13922221	93	64721										
MYH7B	0	genome.wustl.edu	37	chr20	33587427	33587427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tcagtgggaagagcatccagGaactggagaaaaccaagaag	13	7	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	20	33587427	33587427	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.4720	p.E1574K	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	37	0	0	29	20	40.82	-	-	-	A	33587427	G	A	33587427	3	1	728	1	0	0	0	0	1	0	0	0	10112	1175	41	2	4858	2	MYH7B	20	33587427	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		33587427	29438093	94	64722										
PHF20	0	genome.wustl.edu	37	chr20	34451203	34451203	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	catttccgaaaatgacagagAgtattctggagatgcccaag	10	8	1	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	20	34451203	34451203	A	C	SNP	PHF20	ENST00000374012	human	ensembl	69_37n	1	known	missense	c.689	p.E230A	1.000	pfam_DUF3776	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	49	0	0	72	25	25.77	-	-	-	C	34451203	A	C	34451203	3	2	728	1	0	0	0	0	1	0	0	0	11905	304	11	5	707	5	PHF20	20	34451203	Missense_Mutation	SNP	A	TCGA-D8-A27H-01A-11D-A16D-09	863776	34451203	28574317	95	64723										
TOP1	0	genome.wustl.edu	37	chr20	39750739	39750739	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	gaccgagaggaaaataaacaGattgccctgggaacctccaa	10	10	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	20	39750739	39750739	G	C	SNP	TOP1	ENST00000361337	human	ensembl	69_37n	1	known	missense	c.2139	p.Q713H	0.994	superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900	58	0	0	77	17	18.09	-	-	-	C	39750739	G	C	39750739	3	2	728	1	0	0	0	0	1	0	0	0	16459	933	33	2	2217	2	TOP1	20	39750739	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	5299536	39750739	23274781	96	64724										
NCOA3	0	genome.wustl.edu	37	chr20	46268762	46268762	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	ctggcccgatggcatgttgtCcatggaacaagtttctcatg	11	10	1	0			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	20	46268762	46268762	C	G	SNP	NCOA3	ENST00000371998	human	ensembl	69_37n	1	known	missense	c.3047	p.S1016C	0.876	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA3	HGNC	ENSG00000124151	92	0	0	69	38	35.51	-	-	-	G	46268762	C	G	46268762	3	3	728	1	0	0	0	0	1	0	0	0	10302	855	30	2	3131	2	NCOA3	20	46268762	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	6518023	46268762	16756758	97	64725										
CSE1L	0	genome.wustl.edu	37	chr20	47682930	47682930	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tgcaattagcattattggcaGagaagattttccacagaaat	8	6	0	3			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	20	47682930	47682930	G	C	SNP	CSE1L	ENST00000262982	human	ensembl	69_37n	1	known	missense	c.359	p.R120T	1.000	superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Exportin/Importin_Cse1-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	90	0	0	95	38	28.57	-	-	-	C	47682930	G	C	47682930	3	2	728	1	0	0	0	0	1	0	0	0	3962	942	33	2	373	2	CSE1L	20	47682930	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	1414168	47682930	15342590	98	64726										
CLDN14	0	genome.wustl.edu	37	chr21	37833619	37833619	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cacaggaggccggccaggatGaagagggtgccgccgaggat	18	10	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	21	37833619	37833619	G	A	SNP	CLDN14	ENST00000342108	human	ensembl	69_37n	-1	known	silent	c.375	p.F125	0.846	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14,prints_Claudin,prints_Claudin2	-	no_errors	CLDN14	HGNC	ENSG00000159261	31	0	0	12	6	33.33	-	-	-	A	37833619	G	A	37833619	2	1	728	1	0	0	0	0	0	0	0	1	3505	1281	45	2		2	CLDN14	21	37833619	Silent	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		37833619	10296276	99	64727										
MTMR3	0	genome.wustl.edu	37	chr22	30421701	30421701	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	agctctttgaacccagtcgaGtatgcaagtcttgctatagc	9	10	2	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	22	30421701	30421701	G	C	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.3508	p.V1170L	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	92	0	0	33	22	39.29	-	-	-	C	30421701	G	C	30421701	3	2	728	1	0	0	0	0	1	0	0	0	10017	1029	36	4	3609	4	MTMR3	22	30421701	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09		30421701	20882865	100	64728										
CAPN6	0	genome.wustl.edu	37	chrX	110494202	110494202	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cagcctcctgagcggttcatCaggggatcatcatccacagt	10	13	4	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	X	110494202	110494202	C	G	SNP	CAPN6	ENST00000324068	human	ensembl	69_37n	-1	known	silent	c.1101	p.L367	0.998	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_Ca-dep,superfamily_Calpain_domain_III,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_Ca-dep,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	83	0	0	33	30	47.62	-	-	-	G	110494202	C	G	110494202	2	3	728	1	0	0	0	0	0	0	0	1	2655	813	29	2		2	CAPN6	23	110494202	Silent	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09		110494202	44776358	101	64729										
FMR1	0	genome.wustl.edu	37	chrX	147027089	147027089	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	cccgaacagataatcgtccaCgtaatccaagagaggctaaa	8	11	0	2			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	X	147027089	147027089	C	G	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	missense	c.1690	p.R564G	0.999	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	72	0	0	37	26	41.27	-	-	-	G	147027089	C	G	147027089	3	3	728	1	0	0	0	0	1	0	0	0	6006	536	19	3	1752	3	FMR1	23	147027089	Missense_Mutation	SNP	C	TCGA-D8-A27H-01A-11D-A16D-09	36532887	147027089	8243471	102	64730										
SLC10A3	0	genome.wustl.edu	37	chrX	153716037	153716037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.186274509803922	19	0.0143147662125792	1.96268099716376	2.22636528625639	1.56188087774295	0.0502102772819028	0.37201250895228	9	tacctcaatgctgaccgtccGccgctgggccactggcagct	11	16	1	1			TCGA-D8-A27H-01A-11D-A16D-09	TCGA-D8-A27H-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78e51220-c9f8-44b2-bc1c-b34a56af3b54	2a7c7ae5-3522-4626-8f91-1ffb98df5c70	X	153716037	153716037	G	A	SNP	SLC10A3	ENST00000263512	human	ensembl	69_37n	-1	known	missense	c.1243	p.R415W	0.990	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903	20	0	0	12	17	58.62	-	-	-	A	153716037	G	A	153716037	3	1	728	1	0	0	0	0	1	0	0	0	14464	1086	38	1	194	1	SLC10A3	23	153716037	Missense_Mutation	SNP	G	TCGA-D8-A27H-01A-11D-A16D-09	6688948	153716037	1554523	103	64731										
POGZ	0	genome.wustl.edu	37	chr1	151379720	151379720	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ttttttcttacctcacagaaTttttaaacaaagccaaatac	2	9	2	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	1	151379720	151379720	T	C	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.2423	p.N808S	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	55	0	0	72	12	14.29	-	-	-	C	151379720	T	C	151379720	3	2	729	1	0	0	0	0	1	0	0	0	12260	1493	52	5	1825	5	POGZ	1	151379720	Missense_Mutation	SNP	T	TCGA-D8-A27I-01A-11D-A16D-09		151379720	97870901	1	64732										
RYR2	0	genome.wustl.edu	37	chr1	237777819	237777819	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	accatacagatgctgacagaAgctgttaaagagggcagtct	11	8	1	4			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	1	237777819	237777819	A	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.5385	p.E1795D	0.968	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	30	0	0	41	22	34.92	-	-	-	T	237777819	A	T	237777819	3	4	729	1	0	0	0	0	1	0	0	0	13855	69	3	5	5537	5	RYR2	1	237777819	Missense_Mutation	SNP	A	TCGA-D8-A27I-01A-11D-A16D-09	86398099	237777819	11472802	2	64733										
OR2T33	0	genome.wustl.edu	37	chr1	248436177	248436177	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tcttgacctgtgggcctcatTttgctggtgttttatgttta	10	7	2	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	1	248436177	248436177	T	C	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.940	p.N314D	0.015	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	35	0	0	43	10	18.87	-	-	-	C	248436177	T	C	248436177	3	2	729	1	0	0	0	0	1	0	0	0	11097	1841	64	5	25	5	OR2T33	1	248436177	Missense_Mutation	SNP	T	TCGA-D8-A27I-01A-11D-A16D-09	10658358	248436177	814444	3	64734										
CD200R1	0	genome.wustl.edu	37	chr3	112648154	112648154	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ctgaaggtccgaattctgatCaggtctggagacccaggtta	12	9	3	3			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	3	112648154	112648154	C	A	SNP	CD200R1	ENST00000308611	human	ensembl	69_37n	-1	known	missense	c.403	p.D135Y	0.552	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1	HGNC	ENSG00000163606	108	0	0	149	18	10.78	-	-	-	A	112648154	C	A	112648154	3	1	729	1	0	0	0	0	1	0	0	0	3010	826	29	2	710	2	CD200R1	3	112648154	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09		112648154	85374276	4	64735										
MBNL1	0	genome.wustl.edu	37	chr3	152165442	152165442	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ctgtacttcccccattaccaAagaggcctgctcttgaaaaa	6	13	1	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	3	152165442	152165442	A	G	SNP	MBNL1	ENST00000282486	human	ensembl	69_37n	1	known	missense	c.895	p.K299E	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601	41	0	0	59	11	15.71	-	-	-	G	152165442	A	G	152165442	3	3	729	1	0	0	0	0	1	0	0	0	9424	15	1	5	917	5	MBNL1	3	152165442	Missense_Mutation	SNP	A	TCGA-D8-A27I-01A-11D-A16D-09	39517288	152165442	45856988	5	64736										
KLB	0	genome.wustl.edu	37	chr4	39439521	39439521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ctactacaaacagatcatacGagaaaatggtttttctttaa	5	7	2	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	4	39439521	39439521	G	A	SNP	KLB	ENST00000257408	human	ensembl	69_37n	1	known	missense	c.1511	p.R504Q	0.001	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962	55	0	0	64	12	15.38	-	-	-	A	39439521	G	A	39439521	3	1	729	1	0	0	0	0	1	0	0	0	8385	1058	37	1	1521	1	KLB	4	39439521	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		39439521	151714755	6	64737										
AHRR	0	genome.wustl.edu	37	chr5	434764	434764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ctccccaccagctctgtgcaCggggccgaggtgaacagtcc	12	16	1	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	5	434764	434764	C	T	SNP	AHRR	ENST00000316418	human	ensembl	69_37n	1	known	missense	c.1975	p.R659W	0.000	NULL	pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	AHRR	HGNC	ENSG00000063438	12	0	0	9	5	35.71	-	-	-	T	434764	C	T	434764	3	4	729	1	0	0	0	0	1	0	0	0	417	527	19	1	2021	1	AHRR	5	434764	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09		434764	180480496	7	64738										
ADAMTS12	0	genome.wustl.edu	37	chr5	33658359	33658359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ttcattgatgttacaactgcGgtgaggctgacacattcctg	10	9	1	3			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	5	33658359	33658359	G	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.1120	p.R374C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	38	0	0	56	14	20	-	-	-	A	33658359	G	A	33658359	3	1	729	1	0	0	0	0	1	0	0	0	257	1116	39	1	3736	1	ADAMTS12	5	33658359	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09	33223595	33658359	147256901	8	64739										
MEGF10	0	genome.wustl.edu	37	chr5	126792857	126792857	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	gtccaaggagtattcagcaaTaatgggcgtctctcccagga	11	10	2	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	5	126792857	126792857	T	C	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	silent	c.3270	p.N1090	0.501	NULL	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	46	0	0	49	10	16.95	-	-	-	C	126792857	T	C	126792857	2	2	729	1	0	0	0	0	0	0	0	1	9531	1403	49	5		5	MEGF10	5	126792857	Silent	SNP	T	TCGA-D8-A27I-01A-11D-A16D-09	93134498	126792857	54122403	9	64740										
PCDHGB1	0	genome.wustl.edu	37	chr5	140730020	140730020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	agttgccaactcgaaaactgCgggttagtgcagaggattat	12	7	0	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	5	140730020	140730020	C	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.193	p.R65W	0.229	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	50	0	0	47	38	44.71	-	-	-	T	140730020	C	T	140730020	3	4	729	1	0	0	0	0	1	0	0	0	11635	759	27	1	195	1	PCDHGB1	5	140730020	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09	13937163	140730020	40185240	10	64741										
GABRA1	0	genome.wustl.edu	37	chr5	161324182	161324182	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	gctccaacagcaaccagctaCacccctaatttggccagggg	9	15	0	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	5	161324182	161324182	C	T	SNP	GABRA1	ENST00000023897	human	ensembl	69_37n	1	known	silent	c.1125	p.Y375	0.997	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	56	0	0	68	12	15	-	-	-	T	161324182	C	T	161324182	2	4	729	1	0	0	0	0	0	0	0	1	6209	489	17	4		4	GABRA1	5	161324182	Silent	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09	20594162	161324182	19591078	11	64742										
MAS1L	0	genome.wustl.edu	37	chr6	29455668	29455668	+	Frame_Shift_Del	DEL	C	C	-													0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tggctgaaccagcaaattttCccccagaccatggggtgctg							TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	6	29455668	29455668	C	-	DEL	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	frame_shift_del	c.12	p.I6fs	0.005	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	17	0	0	13	2	13.33	-	-	-	-	29455668	C	-	29455668	7	5	729	1	0	1	0	1	0	0	0	0	9392	842	30	0	1126	0	MAS1L	6	29455668	Frame_Shift_Del	DEL	C	TCGA-D8-A27I-01A-11D-A16D-09		29455668	141659399	12	64743										
GPRC6A	0	genome.wustl.edu	37	chr6	117130687	117130687	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	caagtgtcatagatttcataCcccagtttgactccaggtaa	7	10	2	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	6	117130687	117130687	C	G	SNP	GPRC6A	ENST00000310357	human	ensembl	69_37n	-1	known	silent	c.288	p.G96	0.830	pfam_ANF_lig-bd_rcpt,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	55	0	0	64	12	15.79	-	-	-	G	117130687	C	G	117130687	2	3	729	1	0	0	0	0	0	0	0	1	6779	494	18	4		4	GPRC6A	6	117130687	Silent	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09	87675019	117130687	53984380	13	64744										
PSMG3	0	genome.wustl.edu	37	chr7	1607460	1607460	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tgagacacaaacgctaccagGttctttgcaaagacatggat	9	9	1	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	7	1607460	1607460	G	C	SNP	PSMG3	ENST00000252329	human	ensembl	69_37n	-1	known	missense	c.243	p.N81K	1.000	pfam_Proteasome_assmbl_chp_3	pfam_Proteasome_assmbl_chp_3	-	no_errors	PSMG3	HGNC	ENSG00000157778	32	0	0	34	6	14.63	-	-	-	C	1607460	G	C	1607460	3	2	729	1	0	0	0	0	1	0	0	0	12793	1252	44	4	129	4	PSMG3	7	1607460	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		1607460	157531203	14	64745										
ZNF425	0	genome.wustl.edu	37	chr7	148815337	148815337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	gggaatcaagggtctcgtaaTtggtcttcatctcttgctta	10	8	5	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	7	148815337	148815337	T	C	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.122	p.N41S	0.969	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	112	1	0.88	138	35	19.89	-	-	-	C	148815337	T	C	148815337	3	2	729	1	0	0	0	0	1	0	0	0	17995	1493	52	5	2148	5	ZNF425	7	148815337	Missense_Mutation	SNP	T	TCGA-D8-A27I-01A-11D-A16D-09	147207877	148815337	10323326	15	64746										
CSPP1	0	genome.wustl.edu	37	chr8	68062079	68062079	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cataacccagatgcaagaacAtatgaagataaaagggctgt	9	7	0	4			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	8	68062079	68062079	A	G	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.2022	p.T674	0.175	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	47	0	0	84	17	16.83	-	-	-	G	68062079	A	G	68062079	2	3	729	1	0	0	0	0	0	0	0	1	3994	204	8	5		5	CSPP1	8	68062079	Silent	SNP	A	TCGA-D8-A27I-01A-11D-A16D-09		68062079	78301943	16	64747										
IKBKAP	0	genome.wustl.edu	37	chr9	111663920	111663920	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cttgatacctcaatgtcattGatgaaaaagcgacacctgtc	7	10	2	3			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	9	111663920	111663920	G	A	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	silent	c.1896	p.I632	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	39	0	0	61	11	15.28	-	-	-	A	111663920	G	A	111663920	2	1	729	1	0	0	0	0	0	0	0	1	7664	1280	45	2		2	IKBKAP	9	111663920	Silent	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		111663920	29549511	17	64748										
USP47	0	genome.wustl.edu	37	chr11	11964387	11964387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tacaagttcagtggacagtgAtattcttagctccagtcata	8	8	3	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	11	11964387	11964387	A	G	SNP	USP47	ENST00000399455	human	ensembl	69_37n	1	known	missense	c.2879	p.D960G	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP47	HGNC	ENSG00000170242	39	0	0	40	15	27.27	-	-	-	G	11964387	A	G	11964387	3	3	729	1	0	0	0	0	1	0	0	0	17175	333	12	5	2689	5	USP47	11	11964387	Missense_Mutation	SNP	A	TCGA-D8-A27I-01A-11D-A16D-09		11964387	123042129	18	64749										
SLC22A12	0	genome.wustl.edu	37	chr11	64361228	64361228	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	gtgcgggactggacactgctGcagctggtggtctcggtccc	16	12	1	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	11	64361228	64361228	G	T	SNP	SLC22A12	ENST00000377574	human	ensembl	69_37n	1	known	silent	c.783	p.L261	0.707	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891	48	0	0	51	6	10.53	-	-	-	T	64361228	G	T	64361228	2	4	729	1	0	0	0	0	0	0	0	1	14532	1306	46	4		4	SLC22A12	11	64361228	Silent	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09	52396841	64361228	70645288	19	64750										
ABCC9	0	genome.wustl.edu	37	chr12	22068664	22068664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tactgctctcattgctattgGcaattttccaattgccttca	5	11	2	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	12	22068664	22068664	G	T	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.754	p.P252T	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	59	0	0	88	16	15.38	-	-	-	T	22068664	G	T	22068664	3	4	729	1	0	0	0	0	1	0	0	0	59	1203	42	4	4173	4	ABCC9	12	22068664	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		22068664	111783231	20	64751										
SCN8A	0	genome.wustl.edu	37	chr12	52162755	52162755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cctccagatctcagtgatccGtatcaagaagggtgtggcct	11	11	2	3			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	12	52162755	52162755	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.3008	p.R1003H	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	36	0	0	39	10	20.41	-	-	-	A	52162755	G	A	52162755	3	1	729	1	0	0	0	0	1	0	0	0	14012	1145	40	1	3070	1	SCN8A	12	52162755	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09	30094091	52162755	81689140	21	64752										
AVIL	0	genome.wustl.edu	37	chr12	58197340	58197341	+	Frame_Shift_Ins	INS	-	-	GT													0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	atagggagttttccctcccaINSgtaggtcccagaactcggct							TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	12	58197340	58197341	-	GT	INS	AVIL	ENST00000257861	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1784_1783	p.L595fs	1.000:0.992	smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	AVIL	HGNC	ENSG00000135407	13	0	0	36	6	14.29	-	-	-	GT	58197341	-	GT	58197340	7	5	729	1	0	1	1	0	0	0	0	0	1231	188	7	0	699	0	AVIL	12	58197340	Frame_Shift_Ins	INS	-	TCGA-D8-A27I-01A-11D-A16D-09	6034585	58197340	75654555	22	64753										
FAM189A1	0	genome.wustl.edu	37	chr15	29443953	29443953	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tcaccatctgcaggacatcgGaggagaccatctgcatacag	10	12	3	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	15	29443953	29443953	G	C	SNP	FAM189A1	ENST00000261275	human	ensembl	69_37n	-1	known	missense	c.614	p.S205C	0.332	NULL	pfam_CD20-like	-	no_errors	FAM189A1	HGNC	ENSG00000104059	33	0	0	24	7	22.58	-	-	-	C	29443953	G	C	29443953	3	2	729	1	0	0	0	0	1	0	0	0	5557	1174	41	2	1033	2	FAM189A1	15	29443953	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		29443953	73087439	23	64754										
SCNN1G	0	genome.wustl.edu	37	chr16	23200787	23200787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tccagagtcccggaagcgccGagaggcggagtcctggaact	15	12	0	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	16	23200787	23200787	G	A	SNP	SCNN1G	ENST00000300061	human	ensembl	69_37n	1	known	missense	c.413	p.R138Q	0.682	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828	24	0	0	17	6	26.09	-	-	-	A	23200787	G	A	23200787	3	1	729	1	0	0	0	0	1	0	0	0	14018	1058	37	1	419	1	SCNN1G	16	23200787	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		23200787	67153966	24	64755										
CDH1	0	genome.wustl.edu	37	chr16	68842433	68842433	+	Frame_Shift_Del	DEL	A	A	-													0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tcctcccatcagctgcccagAaaatgaaaaaggcccatttc							TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	16	68842433	68842433	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.494	p.N166fs	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	39	0	0	38	14	26.92	-	-	-	-	68842433	A	-	68842433	7	5	729	1	0	1	0	1	0	0	0	0	3124	246	9	0	508	0	CDH1	16	68842433	Frame_Shift_Del	DEL	A	TCGA-D8-A27I-01A-11D-A16D-09	45641646	68842433	21512320	25	64756										
TTLL6	0	genome.wustl.edu	37	chr17	46846360	46846360	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	tgtgggcctacctagctcctCtcacatcctttttggccaga	8	14	1	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	17	46846360	46846360	C	G	SNP	TTLL6	ENST00000393382	human	ensembl	69_37n	-1	known	missense	c.2667	p.E889D	0.696	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC	ENSG00000170703	40	0	0	54	6	10	-	-	-	G	46846360	C	G	46846360	3	3	729	1	0	0	0	0	1	0	0	0	16828	912	32	2	12	2	TTLL6	17	46846360	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09		46846360	34348850	26	64757										
PLVAP	0	genome.wustl.edu	37	chr19	17476703	17476703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cagctgttcctccgccacgcGtttgttcagcagcacgcttt	9	15	1	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	19	17476703	17476703	G	A	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	missense	c.571	p.R191C	0.009	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300	28	0	0	31	9	21.43	-	-	-	A	17476703	G	A	17476703	3	1	729	1	0	0	0	0	1	0	0	0	12190	1145	40	1	773	1	PLVAP	19	17476703	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		17476703	41652280	27	64758										
TMPRSS15	0	genome.wustl.edu	37	chr21	19770211	19770211	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ctcactcaaattgtaaaactCttgagttcttatattcattc	3	9	5	1			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	21	19770211	19770211	C	G	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.329	p.R110T	0.869	pfam_SEA,smart_SEA,pfscan_SEA	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	23	0	0	34	6	15	-	-	-	G	19770211	C	G	19770211	3	3	729	1	0	0	0	0	1	0	0	0	16341	913	32	2	2822	2	TMPRSS15	21	19770211	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09		19770211	28359684	28	64759										
LGALS2	0	genome.wustl.edu	37	chr22	37966365	37966365	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cctgttgggaaaagtcagctCgtgcccatctggcagcttca	11	12	3	0			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	22	37966365	37966365	C	A	SNP	LGALS2	ENST00000215886	human	ensembl	69_37n	-1	known	nonsense	c.304	p.E102*	0.009	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS2	HGNC	ENSG00000100079	54	0	0	48	6	11.11	-	-	-	A	37966365	C	A	37966365	4	1	729	1	0	0	0	0	0	1	0	0	8796	893	31	3	98	3	LGALS2	22	37966365	Nonsense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09		37966365	13338201	29	64760										
GTSE1	0	genome.wustl.edu	37	chr22	46719150	46719150	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	gcggccgcagtcgtgcacgtCagttggcaggtgagtgacgt	17	10	1	2			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	22	46719150	46719150	C	T	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	1	known	missense	c.1496	p.S499L	0.004	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	43	0	0	30	6	16.22	-	-	-	T	46719150	C	T	46719150	3	4	729	1	0	0	0	0	1	0	0	0	6936	838	29	2	1522	2	GTSE1	22	46719150	Missense_Mutation	SNP	C	TCGA-D8-A27I-01A-11D-A16D-09	8752785	46719150	4585416	30	64761										
VCX3B	0	genome.wustl.edu	37	chrX	8434101	8434101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	cactgagtcaggagagcgagGtggaagaaccactgagtcag	15	8	2	4			TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	X	8434101	8434101	G	A	SNP	VCX3B	ENST00000381029	human	ensembl	69_37n	1	known	missense	c.352	p.V118M	0.004	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	34	0	0	24	5	17.24	-	-	-	A	8434101	G	A	8434101	3	1	729	1	0	0	0	0	1	0	0	0	17242	1276	44	4		4	VCX3B	23	8434101	Missense_Mutation	SNP	G	TCGA-D8-A27I-01A-11D-A16D-09		8434101	146836459	31	64762										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.125	4	0.585758357762327	1.5	2.4	1.09090909090909	1	1	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-D8-A27I-01A-11D-A16D-09	TCGA-D8-A27I-10A-02D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47c0db0a-fc37-4fa0-832c-e67f089d3889	2e8da00b-a2d6-4240-8844-5ecbd238eb8c	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	49	0	0	61	8	11.59	-	-	-	AA	135960147	-	AA	135960146	7	5	729	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-D8-A27I-01A-11D-A16D-09	127526045	135960146	19310414	32	64763										
TTC22	0	genome.wustl.edu	37	chr1	55251674	55251674	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	accttggcccttgtgcagtaCgcctgccagttgagttctgg	12	12	1	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	55251674	55251674	C	T	SNP	TTC22	ENST00000371276	human	ensembl	69_37n	-1	known	silent	c.1002	p.A334	0.682	NULL	smart_TPR_repeat	-	no_errors	TTC22	HGNC	ENSG00000006555	59	0	0	16	12	42.86	-	-	-	T	55251674	C	T	55251674	2	4	730	1	0	0	0	0	0	0	0	1	16786	523	19	1		1	TTC22	1	55251674	Silent	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		55251674	193998947	1	64764										
IFI44	0	genome.wustl.edu	37	chr1	79120883	79120883	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tgggcactaatacaactgggAtatctgagaaggtaagcaca	11	7	1	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	79120883	79120883	A	G	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	missense	c.679	p.I227V	0.000	NULL	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	116	0	0	55	27	32.93	-	-	-	G	79120883	A	G	79120883	3	3	730	1	0	0	0	0	1	0	0	0	7571	333	12	5	689	5	IFI44	1	79120883	Missense_Mutation	SNP	A	TCGA-D8-A27K-01A-11D-A16D-09	23869209	79120883	170129738	2	64765										
ARV1	0	genome.wustl.edu	37	chr1	231131566	231131567	+	Frame_Shift_Ins	INS	-	-	A													0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	gtagaacggcccatgacggcINSaaaaaaaaagcccaacttca							TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	231131566	231131567	-	A	INS	ARV1	ENST00000310256	human	ensembl	69_37n	1	known	frame_shift_ins	c.509_510	p.K174fs	0.000:0.000	pfam_Arv1	pfam_Arv1	-	no_errors	ARV1	HGNC	ENSG00000173409	108	0	0	108	36	25	-	-	-	A	231131567	-	A	231131566	7	5	730	1	0	1	1	0	0	0	0	0	1006	710	25	0	523	0	ARV1	1	231131566	Frame_Shift_Ins	INS	-	TCGA-D8-A27K-01A-11D-A16D-09	152010683	231131566	18119055	3	64766										
NBAS	0	genome.wustl.edu	37	chr2	15651439	15651439	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tagaagcttttgacatgcctActtcagcagtttcacatcca	6	11	2	2			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	2	15651439	15651439	A	T	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.782	p.V261E	0.946	superfamily_Quino_amine_DH_bsu	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	75	0	0	28	17	36.96	-	-	-	T	15651439	A	T	15651439	3	4	730	1	0	0	0	0	1	0	0	0	10258	391	14	5	6505	5	NBAS	2	15651439	Missense_Mutation	SNP	A	TCGA-D8-A27K-01A-11D-A16D-09		15651439	227547934	4	64767										
GNLY	0	genome.wustl.edu	37	chr2	85923124	85923124	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ggagctgggccgtgactacaGgacctgtctgacgatagtcc	14	11	1	2			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	2	85923124	85923124	G	T	SNP	GNLY	ENST00000526018	human	ensembl	69_37n	1	putative	nonsense	c.100	p.G34*	0.000	smart_SaposinB,pfscan_SaposinB	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_start_codon:pseudogene:no_stop_codon	GNLY	HGNC	ENSG00000115523	78	0	0	32	4	11.11	-	-	-	T	85923124	G	T	85923124	4	4	730	1	0	0	0	0	0	1	0	0	6591	1000	35	4	221	4	GNLY	2	85923124	Nonsense_Mutation	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09	70271685	85923124	157276249	5	64768										
POLR1A	0	genome.wustl.edu	37	chr2	86302224	86302224	+	Frame_Shift_Del	DEL	G	G	-													0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	cttggccacggcctctcgctGggtcatgtccacagcgctca							TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	2	86302224	86302224	G	-	DEL	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	frame_shift_del	c.1540	p.Q514fs	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	50	0	0	13	2	13.33	-	-	-	-	86302224	G	-	86302224	7	5	730	1	0	1	0	1	0	0	0	0	12283	1357	47	0	3714	0	POLR1A	2	86302224	Frame_Shift_Del	DEL	G	TCGA-D8-A27K-01A-11D-A16D-09	379100	86302224	156897149	6	64769										
PIK3CA	0	genome.wustl.edu	37	chr3	178916944	178916946	+	In_Frame_Del	DEL	AAG	AAG	-													0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	cagtaggcaaccgtgaagaaAagatcctcaatcgagaaatt							TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	3	178916944	178916946	AAG	-	DEL	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	in_frame_del	c.331_333	p.K111in_frame_del	1.000:1.000:1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	37	0	0	40	13	24.07	-	-	-	-	178916946	AAG	-	178916944	7	5	730	1	0	1	0	1	0	0	0	0	11987	15	1	0	333	0	PIK3CA	3	178916944	In_Frame_Del	DEL	AAG	TCGA-D8-A27K-01A-11D-A16D-09		178916944	19105486	7	64770										
S100Z	0	genome.wustl.edu	37	chr5	76173644	76173644	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ctttgtagaacaattgaagaAgaaaggaaaataaaggtaag	10	2	0	4			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	5	76173644	76173644	A	G	SNP	S100Z	ENST00000317593	human	ensembl	69_37n	1	known	missense	c.287	p.K96R	1.000	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100Z	HGNC	ENSG00000171643	102	0	0	55	22	28.57	-	-	-	G	76173644	A	G	76173644	3	3	730	1	0	0	0	0	1	0	0	0	13878	72	3	5	293	5	S100Z	5	76173644	Missense_Mutation	SNP	A	TCGA-D8-A27K-01A-11D-A16D-09		76173644	104741616	8	64771										
TPMT	0	genome.wustl.edu	37	chr6	18132371	18132371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tccacaaacttaccaaacaaCctttcaatttcagcatgtgg	4	12	2	0			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	18132371	18132371	C	T	SNP	TPMT	ENST00000309983	human	ensembl	69_37n	-1	known	silent	c.618	p.R206	0.001	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	-	no_errors	TPMT	HGNC	ENSG00000137364	101	0	0	61	19	23.75	-	-	-	T	18132371	C	T	18132371	2	4	730	1	0	0	0	0	0	0	0	1	16505	506	18	4		4	TPMT	6	18132371	Silent	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		18132371	152982696	9	64772										
CDC5L	0	genome.wustl.edu	37	chr6	44413391	44413391	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tgatcttcccctgctctccaGataaacaggggtcacatgac	8	13	3	3			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	44413391	44413391	G	C	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	splice_site	c.2092-1	e15-1	1.000	-	-	-	no_errors	CDC5L	HGNC	ENSG00000096401	41	0	0	18	7	28	-	-	-	C	44413391	G	C	44413391	5	2	730	1	0	0	0	0	0	0	1	0	3111	956	33	2	2149	2	CDC5L	6	44413391	Splice_Site	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09	26281020	44413391	126701676	10	64773										
OPRM1	0	genome.wustl.edu	37	chr6	154412457	154412457	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tgcctcaacccagtcctttaTgcatttctggatgaaaactt	6	11	2	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	154412457	154412457	T	C	SNP	OPRM1	ENST00000434900	human	ensembl	69_37n	1	known	silent	c.1293	p.Y431	0.988	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	115	0	0	47	14	22.95	-	-	-	C	154412457	T	C	154412457	2	2	730	1	0	0	0	0	0	0	0	1	10960	1471	51	5		5	OPRM1	6	154412457	Silent	SNP	T	TCGA-D8-A27K-01A-11D-A16D-09	109999066	154412457	16702610	11	64774										
OGDH	0	genome.wustl.edu	37	chr7	44713499	44713499	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	atcatgcagttcacaaatgaGgagaaacggaccctgctggc	11	10	2	2			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	44713499	44713499	G	A	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	silent	c.747	p.E249	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	116	0	0	42	9	17.31	-	-	-	A	44713499	G	A	44713499	2	1	730	1	0	0	0	0	0	0	0	1	10912	991	35	4		4	OGDH	7	44713499	Silent	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09		44713499	114425164	12	64775										
LRRC61	0	genome.wustl.edu	37	chr7	150034402	150034402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ctcctactgggctgcagtccGggagctgctgcctggcctga	14	14	0	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	150034402	150034402	G	A	SNP	LRRC61	ENST00000323078	human	ensembl	69_37n	1	known	missense	c.452	p.R151Q	0.002	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC61	HGNC	ENSG00000127399	76	0	0	15	15	48.39	-	-	-	A	150034402	G	A	150034402	3	1	730	1	0	0	0	0	1	0	0	0	9083	1116	39	1	454	1	LRRC61	7	150034402	Missense_Mutation	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09	105320903	150034402	9104261	13	64776										
GATA3	0	genome.wustl.edu	37	chr10	8111558	8111559	+	Frame_Shift_Ins	INS	-	-	AATA													0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ggctctactacaagcttcacINSaatgtaagtggactgggatc							TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	10	8111558	8111559	-	AATA	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1047_1048	p.I350fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	100	0	0	36	5	12.2	-	-	-	AATA	8111559	-	AATA	8111558	7	5	730	1	0	1	1	0	0	0	0	0	6305	477	17	0	1061	0	GATA3	10	8111558	Frame_Shift_Ins	INS	-	TCGA-D8-A27K-01A-11D-A16D-09		8111558	127423189	14	64777										
TACC2	0	genome.wustl.edu	37	chr10	123954680	123954680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ggtcagcacacagccaccccCggaagaaccaggtaaccaag	10	15	1	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	10	123954680	123954680	C	T	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.5960	p.P1987L	0.835	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	55	0	0	8	13	61.9	-	-	-	T	123954680	C	T	123954680	3	4	730	1	0	0	0	0	1	0	0	0	15594	652	23	1	6058	1	TACC2	10	123954680	Missense_Mutation	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09	115843122	123954680	11580067	15	64778										
DENND5B	0	genome.wustl.edu	37	chr12	31613237	31613237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	gcagagaagcaggtagaatgGgcacataaacatgttgccat	12	7	0	2			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	12	31613237	31613237	G	C	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.1088	p.P363R	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	106	0	0	47	16	25.4	-	-	-	C	31613237	G	C	31613237	3	2	730	1	0	0	0	0	1	0	0	0	4473	1232	43	4	2913	4	DENND5B	12	31613237	Missense_Mutation	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09		31613237	102238658	16	64779										
OR6C3	0	genome.wustl.edu	37	chr12	55725992	55725992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tggattactgtgcttccaacGtcattgatcactttgcatgt	8	9	2	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	12	55725992	55725992	G	A	SNP	OR6C3	ENST00000379667	human	ensembl	69_37n	1	known	missense	c.508	p.V170I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329	230	0	0	96	29	23.2	-	-	-	A	55725992	G	A	55725992	3	1	730	1	0	0	0	0	1	0	0	0	11265	1145	40	1	510	1	OR6C3	12	55725992	Missense_Mutation	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09	24112755	55725992	78125903	17	64780										
FRY	0	genome.wustl.edu	37	chr13	32753825	32753825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	atttcaggccataggcacccCatcggtgggagttctgttaa	11	10	2	0			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	13	32753825	32753825	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.2885	p.P962L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	118	0	0	49	16	24.62	-	-	-	T	32753825	C	T	32753825	3	4	730	1	0	0	0	0	1	0	0	0	6112	594	21	4	2975	4	FRY	13	32753825	Missense_Mutation	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		32753825	82416053	18	64781										
RYR3	0	genome.wustl.edu	37	chr15	34064135	34064135	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	ttgcaggactgtcatgaagtCaggctcagagctggtgaagg	15	7	3	3			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	15	34064135	34064135	C	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	nonsense	c.8831	p.S2944*	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	94	0	0	38	16	29.63	-	-	-	A	34064135	C	A	34064135	4	1	730	1	0	0	0	0	0	1	0	0	13856	838	29	2	9081	2	RYR3	15	34064135	Nonsense_Mutation	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		34064135	68467257	19	64782										
B4GALNT2	0	genome.wustl.edu	37	chr17	47246211	47246211	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	tcttcctggcccacacggagCgactccaaagagttggcttt	10	13	1	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	17	47246211	47246211	C	T	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	nonsense	c.1444	p.R482*	0.204	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	57	0	0	18	14	41.18	-	-	-	T	47246211	C	T	47246211	4	4	730	1	0	0	0	0	0	1	0	0	1271	760	27	1	1500	1	B4GALNT2	17	47246211	Nonsense_Mutation	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		47246211	33948999	20	64783										
HGS	0	genome.wustl.edu	37	chr17	79662012	79662012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	gcaggaggaggctcgcaagaGccccacgccatctgcgcccg	14	16	1	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	17	79662012	79662012	G	A	SNP	HGS	ENST00000329138	human	ensembl	69_37n	1	known	missense	c.1034	p.S345N	1.000	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	66	0	0	14	7	33.33	-	-	-	A	79662012	G	A	79662012	3	1	730	1	0	0	0	0	1	0	0	0	7138	971	34	4	1084	4	HGS	17	79662012	Missense_Mutation	SNP	G	TCGA-D8-A27K-01A-11D-A16D-09	32415801	79662012	1533198	21	64784										
COL4A6	0	genome.wustl.edu	37	chrX	107402723	107402723	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.99043758096535	0.684491978609626	3.76470588235294	0	1	1	0	agtacccaatccagaggctgCgccagcccagggggcactgc	13	15	0	1			TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	X	107402723	107402723	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.4784	p.R1595L	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	73	0	0	23	10	30.3	-	-	-	A	107402723	C	A	107402723	3	1	730	1	0	0	0	0	1	0	0	0	3725	768	27	3	299	3	COL4A6	23	107402723	Missense_Mutation	SNP	C	TCGA-D8-A27K-01A-11D-A16D-09		107402723	47867837	22	64785										
RERE	0	genome.wustl.edu	37	chr1	8426006	8426006	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ctgcttcgggggtcttcttcCaatagtaatagaaggtgatc	11	8	2	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	8426006	8426006	C	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	nonsense	c.1313	p.W438*	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	52	0	0	44	8	15.38	-	-	-	T	8426006	C	T	8426006	4	4	731	1	0	0	0	0	0	1	0	0	13314	595	21	4	3431	4	RERE	1	8426006	Nonsense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09		8426006	240824615	1	64786										
ATP13A2	0	genome.wustl.edu	37	chr1	17316666	17316666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ggactccatcggcaggaactCgagagaggcaggctgacccc	14	13	0	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	17316666	17316666	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	69_37n	-1	known	missense	c.2368	p.E790K	0.568	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A2	HGNC	ENSG00000159363	11	0	0	11	4	26.67	-	-	-	T	17316666	C	T	17316666	3	4	731	1	0	0	0	0	1	0	0	0	1128	893	31	1	1446	1	ATP13A2	1	17316666	Missense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	8890660	17316666	231933955	2	64787										
NAV1	0	genome.wustl.edu	37	chr1	201772760	201772760	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	aaactcctcagatagcatctCaagcctcaacagcatcacta	4	14	4	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	201772760	201772760	C	G	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	nonsense	c.3557	p.S1186*	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	58	0	0	65	9	10.59	-	-	-	G	201772760	C	G	201772760	4	3	731	1	0	0	0	0	0	1	0	0	10255	838	29	2	3676	2	NAV1	1	201772760	Nonsense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	184456094	201772760	47477861	3	64788										
CAD	0	genome.wustl.edu	37	chr2	27447710	27447710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ggggctggccgacaaggtctAttttcttcccataacacctc	9	13	2	0			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	27447710	27447710	A	G	SNP	CAD	ENST00000264705	human	ensembl	69_37n	1	known	missense	c.1352	p.Y451C	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	92	0	0	76	22	22.45	-	-	-	G	27447710	A	G	27447710	3	3	731	1	0	0	0	0	1	0	0	0	2590	449	16	5	1390	5	CAD	2	27447710	Missense_Mutation	SNP	A	TCGA-D8-A27L-01A-11D-A16D-09		27447710	215751663	4	64789										
KDM3A	0	genome.wustl.edu	37	chr2	86709187	86709187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ccgtaagcaacaacaattctGgtttcctccggaatctcttg	7	12	2	0			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	86709187	86709187	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.2647	p.G883S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	153	0	0	165	41	19.9	-	-	-	A	86709187	G	A	86709187	3	1	731	1	0	0	0	0	1	0	0	0	8180	1348	47	4	2709	4	KDM3A	2	86709187	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	59261477	86709187	156490186	5	64790										
AZI2	0	genome.wustl.edu	37	chr3	28381965	28381965	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gaatccttaagtcgttttttGatgtcttcatatgcagtgac	8	7	2	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	28381965	28381965	G	C	SNP	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	missense	c.144	p.I48M	1.000	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	139	0	0	135	15	10	-	-	-	C	28381965	G	C	28381965	3	2	731	1	0	0	0	0	1	0	0	0	1245	1280	45	2	1151	2	AZI2	3	28381965	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		28381965	169640465	6	64791										
FOXP1	0	genome.wustl.edu	37	chr3	71021818	71021818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gtgaagactaagattatgacGcactgcattctgcagcaagt	10	8	1	4			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	71021818	71021818	G	A	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	missense	c.1540	p.R514C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	410	0	0	286	85	22.79	-	-	-	A	71021818	G	A	71021818	3	1	731	1	0	0	0	0	1	0	0	0	6074	1087	38	1	509	1	FOXP1	3	71021818	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	42639853	71021818	127000612	7	64792										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	117	0	0	63	25	28.09	-	-	-	A	178936091	G	A	178936091	3	1	731	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	107914273	178936091	19086339	8	64793										
MASP1	0	genome.wustl.edu	37	chr3	186953790	186953790	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	cactcagcgtgaggcaccacGggtaacttgacatactgcag	11	12	1	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	186953790	186953790	G	A	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	silent	c.1869	p.P623	0.005	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	53	0	0	51	17	25	-	-	-	A	186953790	G	A	186953790	2	1	731	1	0	0	0	0	0	0	0	1	9393	1103	39	1		1	MASP1	3	186953790	Silent	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	8017699	186953790	11068640	9	64794										
LRRC15	0	genome.wustl.edu	37	chr3	194080618	194080618	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	atgaggccattgacgttggcGaagatattccctgggagctg	14	8	0	3			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080618	194080618	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.1173	p.F391	0.002	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	83	0	0	55	16	22.54	-	-	-	A	194080618	G	A	194080618	2	1	731	1	0	0	0	0	0	0	0	1	9036	1049	37	1		1	LRRC15	3	194080618	Silent	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	7126828	194080618	3941812	10	64795										
LRRC15	0	genome.wustl.edu	37	chr3	194080750	194080750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	agggacagctcccgaagctcCgttagcccgttgaaggcacc	12	14	0	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080750	194080750	C	T	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.1041	p.T347	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	50	0	0	44	7	13.73	-	-	-	T	194080750	C	T	194080750	2	4	731	1	0	0	0	0	0	0	0	1	9036	639	23	1		1	LRRC15	3	194080750	Silent	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	132	194080750	3941680	11	64796										
HS3ST1	0	genome.wustl.edu	37	chr4	11401382	11401382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	agaagtggacctcgttctccGcggccgccacgtcggggtgc	15	14	1	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	4	11401382	11401382	G	A	SNP	HS3ST1	ENST00000002596	human	ensembl	69_37n	-1	known	missense	c.248	p.A83V	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST1	HGNC	ENSG00000002587	8	0	0	13	6	31.58	-	-	-	A	11401382	G	A	11401382	3	1	731	1	0	0	0	0	1	0	0	0	7414	1087	38	1	679	1	HS3ST1	4	11401382	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		11401382	179752894	12	64797										
ANK2	0	genome.wustl.edu	37	chr4	114158316	114158316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	cagaatgaccacaatgctgaCgtacaatccaaggtacttaa	7	10	0	3			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	4	114158316	114158316	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.657	p.D219	0.994	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	48	0	0	53	10	15.87	-	-	-	T	114158316	C	T	114158316	2	4	731	1	0	0	0	0	0	0	0	1	621	535	19	1		1	ANK2	4	114158316	Silent	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	102756934	114158316	76995960	13	64798										
C5orf22	0	genome.wustl.edu	37	chr5	31545752	31545752	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	agtgggatggcttttttccaGaatggaatcactagttcccc	10	9	1	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	31545752	31545752	G	A	SNP	C5orf22	ENST00000325366	human	ensembl	69_37n	1	known	splice_site	c.993-1	e7-1	1.000	-	-	-	no_errors	C5orf22	HGNC	ENSG00000082213	180	0	0	159	49	23.56	-	-	-	A	31545752	G	A	31545752	5	1	731	1	0	0	0	0	0	0	1	0	2306	956	33	2	1018	2	C5orf22	5	31545752	Splice_Site	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		31545752	149369508	14	64799										
MAP3K1	0	genome.wustl.edu	37	chr5	56180536	56180537	+	Frame_Shift_Ins	INS	-	-	A													0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	tgagcaagaagaagtagtagINSaagcactaagagaagagata							TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180536	56180537	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3865_3866	p.A1290fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	71	0	0	71	17	19.32	-	-	-	A	56180537	-	A	56180536	7	5	731	1	0	1	1	0	0	0	0	0	9314	943	33	0	3927	0	MAP3K1	5	56180536	Frame_Shift_Ins	INS	-	TCGA-D8-A27L-01A-11D-A16D-09	24634784	56180536	124734724	15	64800			1	103		2	2	51	N	CAT_-	5.168366e-05
MAP3K1	0	genome.wustl.edu	37	chr5	56180586	56180588	+	In_Frame_Del	DEL	CAT	CAT	-													0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	agccatctgaatcatccaaaCatcattaggatgttgggagc							TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180586	56180588	CAT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	in_frame_del	c.3915_3917	p.I1307in_frame_del	1.000:1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	75	0	0	84	13	13.27	-	-	-	-	56180588	CAT	-	56180586	7	5	731	1	0	1	0	1	0	0	0	0	9314	477	17	0	3977	0	MAP3K1	5	56180586	In_Frame_Del	DEL	CAT	TCGA-D8-A27L-01A-11D-A16D-09	50	56180586	124734674	16	64801			1	103		2	2	51	N	CAT_-	5.168366e-05
PCDHGB6	0	genome.wustl.edu	37	chr5	140788421	140788421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	tattgactgccttggacggaGgggacccaccaagaagtgcc	13	11	0	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	140788421	140788421	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.652	p.G218R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	49	0	0	26	9	25.71	-	-	-	A	140788421	G	A	140788421	3	1	731	1	0	0	0	0	1	0	0	0	11640	1000	35	4	654	4	PCDHGB6	5	140788421	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	84607835	140788421	40126839	17	64802										
MGAM	0	genome.wustl.edu	37	chr7	141785701	141785701	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	accctcagccccaagtttgcCgggtttccagctctgatcaa	8	15	3	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	141785701	141785701	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.6579	p.A2193	0.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	32	0	0	26	13	33.33	-	-	-	T	141785701	C	T	141785701	2	4	731	1	0	0	0	0	0	0	0	1	9612	667	23	1		1	MGAM	7	141785701	Silent	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09		141785701	17352962	18	64803										
FAM131B	0	genome.wustl.edu	37	chr7	143056010	143056010	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ctcatggctgtgttgtggctGaacagctggtgtcttccccc	12	12	2	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	143056010	143056010	G	C	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.376	p.Q126E	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	41	0	0	38	5	11.63	-	-	-	C	143056010	G	C	143056010	3	2	731	1	0	0	0	0	1	0	0	0	5480	1299	45	2	718	2	FAM131B	7	143056010	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	1270309	143056010	16082653	19	64804										
ZNF483	0	genome.wustl.edu	37	chr9	114290002	114290002	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	attttgcctggggagatcagGatttgggtaaagtcacaaca	12	6	2	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	9	114290002	114290002	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	silent	c.327	p.R109	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	100	0	0	79	28	26.17	-	-	-	A	114290002	G	A	114290002	2	1	731	1	0	0	0	0	0	0	0	1	18032	1165	41	2		2	ZNF483	9	114290002	Silent	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		114290002	26923429	20	64805										
PTEN	0	genome.wustl.edu	37	chr10	89624271	89624272	+	Frame_Shift_Ins	INS	-	-	T													0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ttagcagaaacaaaaggagaINStatcaagaggatggattcga							TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	89624271	89624272	-	T	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.45_46	p.Y15fs	1.000:1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	143	0	0	117	35	23.03	-	-	-	T	89624272	-	T	89624271	7	5	731	1	0	1	1	0	0	0	0	0	12818	330	12	0	47	0	PTEN	10	89624271	Frame_Shift_Ins	INS	-	TCGA-D8-A27L-01A-11D-A16D-09		89624271	45910476	21	64806										
PPRC1	0	genome.wustl.edu	37	chr10	103908402	103908402	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	caggtacagctcttatcgttCacatgaccattaccaaaggc	7	12	2	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	103908402	103908402	C	T	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.4568	p.S1523L	0.024	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	85	0	0	68	36	34.62	-	-	-	T	103908402	C	T	103908402	3	4	731	1	0	0	0	0	1	0	0	0	12487	838	29	2	4610	2	PPRC1	10	103908402	Missense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	14284131	103908402	31626345	22	64807										
OTUB1	0	genome.wustl.edu	37	chr11	63764394	63764394	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gggcttcactgaattcacaaTtgaggatttccacaacacgg	9	10	2	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	11	63764394	63764394	T	C	SNP	OTUB1	ENST00000422031	human	ensembl	69_37n	1	known	missense	c.515	p.I172T	1.000	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB1	HGNC	ENSG00000167770	60	0	0	32	9	21.95	-	-	-	C	63764394	T	C	63764394	3	2	731	1	0	0	0	0	1	0	0	0	11384	1493	52	5	422	5	OTUB1	11	63764394	Missense_Mutation	SNP	T	TCGA-D8-A27L-01A-11D-A16D-09		63764394	71242122	23	64808										
NEIL1	0	genome.wustl.edu	37	chr15	75641328	75641328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	tggtgttcggcggctgcgtgGagaagtcctctgtcagccgc	16	11	2	1			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	15	75641328	75641328	G	A	SNP	NEIL1	ENST00000355059	human	ensembl	69_37n	1	known	missense	c.82	p.E28K	1.000	pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398	9	0	0	11	8	42.11	-	-	-	A	75641328	G	A	75641328	3	1	731	1	0	0	0	0	1	0	0	0	10390	1175	41	2	84	2	NEIL1	15	75641328	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		75641328	26890064	24	64809										
RHOT2	0	genome.wustl.edu	37	chr16	723516	723516	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gagctgcatccctcttccttCtggctccgggggctgctggg	14	14	2	0			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	16	723516	723516	C	T	SNP	RHOT2	ENST00000315082	human	ensembl	69_37n	1	known	silent	c.1767	p.F589	1.000	pirsf_Small_GTPase_Miro	pirsf_Small_GTPase_Miro,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_HAND_2	-	no_errors	RHOT2	HGNC	ENSG00000140983	31	0	0	34	17	33.33	-	-	-	T	723516	C	T	723516	2	4	731	1	0	0	0	0	0	0	0	1	13428	912	32	2		2	RHOT2	16	723516	Silent	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09		723516	89631237	25	64810										
ZNF254	0	genome.wustl.edu	37	chr19	24270126	24270126	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	taagatgccaggaccccctaGaagcctagaaatggtgagaa	11	9	0	4			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	24270126	24270126	G	A	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.17	p.R6K	0.004	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	105	0	0	79	13	14.13	-	-	-	A	24270126	G	A	24270126	3	1	731	1	0	0	0	0	1	0	0	0	17894	942	33	2	19	2	ZNF254	19	24270126	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		24270126	34858857	26	64811										
NPAS1	0	genome.wustl.edu	37	chr19	47535538	47535538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	tccttccatctgccccagccCcaggccgccgcggccccgca	9	23	1	0			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	47535538	47535538	C	T	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	1	known	missense	c.361	p.P121S	0.980	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	18	0	0	11	5	31.25	-	-	-	T	47535538	C	T	47535538	3	4	731	1	0	0	0	0	1	0	0	0	10634	623	22	4	371	4	NPAS1	19	47535538	Missense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09	23265412	47535538	11593445	27	64812										
ZNF417	0	genome.wustl.edu	37	chr19	58423433	58423433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gcgtgagcaacttacccagcGaggatatgagagccaggttc	13	10	0	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	58423433	58423433	G	A	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.158	p.S53L	0.257	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	150	0	0	142	23	13.94	-	-	-	A	58423433	G	A	58423433	3	1	731	1	0	0	0	0	1	0	0	0	17990	1059	37	1	1577	1	ZNF417	19	58423433	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09	10887895	58423433	705550	28	64813										
SGK2	0	genome.wustl.edu	37	chr20	42195054	42195054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	tggtgcctgaagccctggatGggcggagctgaccccccaac	14	14	0	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	20	42195054	42195054	G	A	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	missense	c.99	p.M33I	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	60	0	0	90	26	22.41	-	-	-	A	42195054	G	A	42195054	3	1	731	1	0	0	0	0	1	0	0	0	14297	1348	47	4	101	4	SGK2	20	42195054	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		42195054	20830466	29	64814										
TMPRSS6	0	genome.wustl.edu	37	chr22	37482397	37482397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ggcccttcttccagacgaccGccatgatggcccccgacgcc	10	19	1	2			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	22	37482397	37482397	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	missense	c.899	p.A300V	0.972	pirsf_Pept_S1A_matriptase-2,superfamily_CUB	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	13	0	0	14	5	26.32	-	-	-	A	37482397	G	A	37482397	3	1	731	1	0	0	0	0	1	0	0	0	16346	1087	38	1	1553	1	TMPRSS6	22	37482397	Missense_Mutation	SNP	G	TCGA-D8-A27L-01A-11D-A16D-09		37482397	13822169	30	64815										
FRMPD4	0	genome.wustl.edu	37	chrX	12736552	12736552	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	ccaagcggatgtcatcactgCaaagcgagggccatttttct	10	11	3	0			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	12736552	12736552	C	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3607	p.Q1203K	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	32	0	0	48	17	26.15	-	-	-	A	12736552	C	A	12736552	3	1	731	1	0	0	0	0	1	0	0	0	6108	711	25	4	3669	4	FRMPD4	23	12736552	Missense_Mutation	SNP	C	TCGA-D8-A27L-01A-11D-A16D-09		12736552	142534008	31	64816										
PAK3	0	genome.wustl.edu	37	chrX	110385364	110385364	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	8	0.0831751493028245	2.27164835164835	7.0989010989011	1.61338661338661	0.619269619269619	1	0	gagcgcccagagatctctctTccttcagactttgagcatac	8	13	3	3			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	110385364	110385364	T	A	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	silent	c.216	p.L72	1.000	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	170	0	0	183	27	12.86	-	-	-	A	110385364	T	A	110385364	2	1	731	1	0	0	0	0	0	0	0	1	11475	1770	62	5		5	PAK3	23	110385364	Silent	SNP	T	TCGA-D8-A27L-01A-11D-A16D-09	97648812	110385364	44885196	32	64817										
AGRN	0	genome.wustl.edu	37	chr1	984735	984735	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	caccctctcggtggatggtgAgacccctgttctgggcgaga	14	12	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	984735	984735	A	T	SNP	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	missense	c.4418	p.E1473V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	20	0	0	21	9	29.03	-	-	-	T	984735	A	T	984735	3	4	732	1	0	0	0	0	1	0	0	0	397	304	11	5	4516	5	AGRN	1	984735	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09		984735	248265886	1	64818										
VPS13D	0	genome.wustl.edu	37	chr1	12374322	12374322	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	acgaatgtgttcagctgtatCtttcagcccgctaagaacag	9	10	3	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	12374322	12374322	C	A	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	missense	c.3554	p.S1185Y	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	51	0	0	57	10	14.71	-	-	-	A	12374322	C	A	12374322	3	1	732	1	0	0	0	0	1	0	0	0	17289	903	32	2	7200	2	VPS13D	1	12374322	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	11389587	12374322	236876299	2	64819										
CNKSR1	0	genome.wustl.edu	37	chr1	26508367	26508367	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ggtacctcttctcccacttaAatgatttctcagcatgccag	6	13	3	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	26508367	26508367	A	C	SNP	CNKSR1	ENST00000374253	human	ensembl	69_37n	1	known	missense	c.412	p.N138H	1.000	pfam_CRIC_domain_Chordata	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	39	0	0	41	8	16.33	-	-	-	C	26508367	A	C	26508367	3	2	732	1	0	0	0	0	1	0	0	0	3636	14	1	5	426	5	CNKSR1	1	26508367	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09	14134045	26508367	222742254	3	64820										
LRRC8C	0	genome.wustl.edu	37	chr1	90180366	90180366	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cagcctatctgtactttcacCgaaaattggaaatttgctat	6	9	2	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	90180366	90180366	C	A	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.2237	p.P746Q	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	41	0	0	40	15	27.27	-	-	-	A	90180366	C	A	90180366	3	1	732	1	0	0	0	0	1	0	0	0	9089	652	23	3	2243	3	LRRC8C	1	90180366	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	63671999	90180366	159070255	4	64821										
OR10K1	0	genome.wustl.edu	37	chr1	158435435	158435435	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aggctgcagcagctgctcttTgttatcttcctgctcctcta	8	13	3	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	158435435	158435435	T	G	SNP	OR10K1	ENST00000289451	human	ensembl	69_37n	1	known	missense	c.84	p.F28L	0.008	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285	36	0	0	51	14	21.54	-	-	-	G	158435435	T	G	158435435	3	3	732	1	0	0	0	0	1	0	0	0	10986	1809	63	5	86	5	OR10K1	1	158435435	Missense_Mutation	SNP	T	TCGA-D8-A27M-01A-11D-A16D-09	68255069	158435435	90815186	5	64822										
FMO1	0	genome.wustl.edu	37	chr1	171250104	171250104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tggctcaatcatgcaaattaCggcttaataccagaagacag	8	9	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	171250104	171250104	C	T	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	silent	c.807	p.Y269	0.996	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	42	0	0	46	6	11.54	-	-	-	T	171250104	C	T	171250104	2	4	732	1	0	0	0	0	0	0	0	1	6000	547	19	1		1	FMO1	1	171250104	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	12814669	171250104	78000517	6	64823										
CEP350	0	genome.wustl.edu	37	chr1	180062936	180062936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ctcctcaaaaaatatctcacAttccagaaaactttgatgac	3	11	2	3			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	1	180062936	180062936	A	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.7696	p.I2566V	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	26	0	0	20	7	25.93	-	-	-	G	180062936	A	G	180062936	3	3	732	1	0	0	0	0	1	0	0	0	3283	217	8	5	7826	5	CEP350	1	180062936	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09	8812832	180062936	69187685	7	64824										
GCC2	0	genome.wustl.edu	37	chr2	109086705	109086705	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aaatttaaggaaagccacctCaaatgcaaaccaagacaatc	5	10	1	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	2	109086705	109086705	C	A	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	nonsense	c.920	p.S307*	0.671	superfamily_tRNA-bd_arm	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	27	0	0	26	8	23.53	-	-	-	A	109086705	C	A	109086705	4	1	732	1	0	0	0	0	0	1	0	0	6336	838	29	2	942	2	GCC2	2	109086705	Nonsense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		109086705	134112668	8	64825										
CCDC74A	0	genome.wustl.edu	37	chr2	132288293	132288293	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ctcacggacacacaggccagGaggcaagcgtgggcgtcttg	15	12	2	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	2	132288293	132288293	G	C	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	1	known	missense	c.437	p.G146A	0.006	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	31	0	0	32	6	15.79	-	-	-	C	132288293	G	C	132288293	3	2	732	1	0	0	0	0	1	0	0	0	2874	1174	41	2	447	2	CCDC74A	2	132288293	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	23201588	132288293	110911080	9	64826										
KIF5C	0	genome.wustl.edu	37	chr2	149868144	149868144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aacggccgtccatgccattcGagggggaggaggcagctctt	15	11	1	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	2	149868144	149868144	G	T	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.2828	p.R943L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	27	0	0	18	5	21.74	-	-	-	T	149868144	G	T	149868144	3	4	732	1	0	0	0	0	1	0	0	0	8359	1058	37	3	2848	3	KIF5C	2	149868144	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	17579851	149868144	93331229	10	64827										
TTN	0	genome.wustl.edu	37	chr2	179477304	179477304	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gcgtggtggtgatggaggatCtgaaaaagaaggaaggaaaa	17	2	1	3			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	2	179477304	179477304	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	splice_site	c.42245-1	e214-1	1.000	-	-	-	no_errors	TTN	HGNC	ENSG00000155657	80	0	0	82	27	24.55	-	-	-	G	179477304	C	G	179477304	5	3	732	1	0	0	0	0	0	0	1	0	16832	927	32	2	58133	2	TTN	2	179477304	Splice_Site	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	29609160	179477304	63722069	11	64828										
FAM171B	0	genome.wustl.edu	37	chr2	187626600	187626600	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ctctaggtgatgctcaagatGaaaagaggtatctcacaggt	11	7	3	4			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	2	187626600	187626600	G	T	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	nonsense	c.1531	p.E511*	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	36	0	0	33	19	36.54	-	-	-	T	187626600	G	T	187626600	4	4	732	1	0	0	0	0	0	1	0	0	5531	1291	45	2	1561	2	FAM171B	2	187626600	Nonsense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	8149296	187626600	55572773	12	64829										
TMPRSS11D	0	genome.wustl.edu	37	chr4	68725377	68725377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tggattcagaaatcttgaagTcgaagttacacgtgctggcc	11	8	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	4	68725377	68725377	T	C	SNP	TMPRSS11D	ENST00000283916	human	ensembl	69_37n	-1	known	missense	c.28	p.T10A	0.000	pirsf_Pept_S1A_HAT/DESC1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_SEA,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802	24	0	0	39	8	17.02	-	-	-	C	68725377	T	C	68725377	3	2	732	1	0	0	0	0	1	0	0	0	16336	1667	58	5	1264	5	TMPRSS11D	4	68725377	Missense_Mutation	SNP	T	TCGA-D8-A27M-01A-11D-A16D-09		68725377	122428899	13	64830										
DSPP	0	genome.wustl.edu	37	chr4	88537123	88537123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	agcgatagcagcgacagcagCgacagcagcgatagcagtga	14	10	0	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	4	88537123	88537123	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3309	p.S1103	0.989	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	12	0	0	7	6	46.15	-	-	-	T	88537123	C	T	88537123	2	4	732	1	0	0	0	0	0	0	0	1	4817	767	27	1		1	DSPP	4	88537123	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	19811746	88537123	102617153	14	64831										
TET2	0	genome.wustl.edu	37	chr4	106155404	106155406	+	In_Frame_Del	DEL	CTC	CTC	-													0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	acgcacagttagtgaaccttCtctctctgggctccttcaga							TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	4	106155404	106155406	CTC	-	DEL	TET2	ENST00000380013	human	ensembl	69_37n	1	known	in_frame_del	c.305_307	p.SL102in_frame_delF	1.000:1.000:1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	20	0	0	18	5	21.74	-	-	-	-	106155406	CTC	-	106155404	7	5	732	1	0	1	0	1	0	0	0	0	15865	913	32	0	307	0	TET2	4	106155404	In_Frame_Del	DEL	CTC	TCGA-D8-A27M-01A-11D-A16D-09	17618281	106155404	84998872	15	64832										
TMEM155	0	genome.wustl.edu	37	chr4	122682813	122682813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ctctcttattctgtagaatcGcaccagatggcatcagttct	7	11	4	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	4	122682813	122682813	G	A	SNP	TMEM155	ENST00000337677	human	ensembl	69_37n	-1	known	missense	c.92	p.A31V	0.062	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112	41	0	0	38	9	19.15	-	-	-	A	122682813	G	A	122682813	3	1	732	1	0	0	0	0	1	0	0	0	16167	1087	38	1	308	1	TMEM155	4	122682813	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	16527409	122682813	68471463	16	64833										
KIF2A	0	genome.wustl.edu	37	chr5	61642964	61642964	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tattcccacataggccgaatAcatcaagcaatggtaacatc	6	11	1	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	5	61642964	61642964	A	G	SNP	KIF2A	ENST00000407818	human	ensembl	69_37n	1	known	missense	c.72	p.I24M	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796	57	0	0	28	14	33.33	-	-	-	G	61642964	A	G	61642964	3	3	732	1	0	0	0	0	1	0	0	0	8349	381	14	5	78	5	KIF2A	5	61642964	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09		61642964	119272296	17	64834										
STK10	0	genome.wustl.edu	37	chr5	171533635	171533635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gcccctcaccacttagagggCgtgagcagcgtgggagggtc	16	12	1	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	5	171533635	171533635	C	T	SNP	STK10	ENST00000176763	human	ensembl	69_37n	-1	known	silent	c.777	p.T259	0.364	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK10	HGNC	ENSG00000072786	38	0	0	22	14	36.84	-	-	-	T	171533635	C	T	171533635	2	4	732	1	0	0	0	0	0	0	0	1	15377	755	27	1		1	STK10	5	171533635	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	109890671	171533635	9381625	18	64835										
HLA-F	0	genome.wustl.edu	37	chr6	29692856	29692856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccccatctctgaccatgaggCcaccctgaggtgctgggccc	11	17	1	3			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	6	29692856	29692856	C	T	SNP	HLA-F	ENST00000259951	human	ensembl	69_37n	1	known	missense	c.659	p.A220V	0.857	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-F	HGNC	ENSG00000204642	43	0	0	46	22	31.88	-	-	-	T	29692856	C	T	29692856	3	4	732	1	0	0	0	0	1	0	0	0	7262	739	26	4	673	4	HLA-F	6	29692856	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		29692856	141422211	19	64836										
KIFC1	0	genome.wustl.edu	37	chr6	33371565	33371565	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gcaaacgtccagcctgggacTtaaagggtcagttatgtgac	12	9	1	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	6	33371565	33371565	T	C	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	silent	c.415	p.L139	0.830	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	19	0	0	15	8	34.78	-	-	-	C	33371565	T	C	33371565	2	2	732	1	0	0	0	0	0	0	0	1	8364	1606	56	5		5	KIFC1	6	33371565	Silent	SNP	T	TCGA-D8-A27M-01A-11D-A16D-09	3678709	33371565	137743502	20	64837										
KIF6	0	genome.wustl.edu	37	chr6	39507890	39507890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ttcttctgggtttcctaggcGgaagggtgggctctgggact	16	8	3	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	6	39507890	39507890	G	A	SNP	KIF6	ENST00000287152	human	ensembl	69_37n	-1	known	missense	c.1534	p.R512C	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	80	0	0	68	24	26.09	-	-	-	A	39507890	G	A	39507890	3	1	732	1	0	0	0	0	1	0	0	0	8360	1116	39	1	954	1	KIF6	6	39507890	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	6136325	39507890	131607177	21	64838										
IMPG1	0	genome.wustl.edu	37	chr6	76728458	76728458	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aagttgggactttcctgctaGctcctggtaatatggggact	12	8	0	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	6	76728458	76728458	G	T	SNP	IMPG1	ENST00000369950	human	ensembl	69_37n	-1	known	missense	c.784	p.L262I	0.872	pfam_SEA,smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC	ENSG00000112706	45	0	0	51	8	13.56	-	-	-	T	76728458	G	T	76728458	3	4	732	1	0	0	0	0	1	0	0	0	7782	962	34	4	1653	4	IMPG1	6	76728458	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	37220568	76728458	94386609	22	64839										
VSTM2A	0	genome.wustl.edu	37	chr7	54610496	54610497	+	Frame_Shift_Del	DEL	TC	TC	-													0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	atgtacaacaagggctttctTctcaaggtaagtcttgctca							TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	7	54610496	54610497	TC	-	DEL	VSTM2A	ENST00000402026	human	ensembl	69_37n	1	known	frame_shift_del	c.70_71	p.Q25fs	1.000:1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM2A	HGNC	ENSG00000170419	139	0	0	154	33	17.28	-	-	-	-	54610497	TC	-	54610496	7	5	732	1	0	1	0	1	0	0	0	0	17326	1783	62	0	75	0	VSTM2A	7	54610496	Frame_Shift_Del	DEL	TC	TCGA-D8-A27M-01A-11D-A16D-09		54610496	104528167	23	64840										
ABCB4	0	genome.wustl.edu	37	chr7	87037370	87037370	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	caccactgtccccgccaaggGgtcgtagaaccgctccagga	11	16	0	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	7	87037370	87037370	G	T	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.3262	p.P1088T	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	9	0	0	20	7	25.93	-	-	-	T	87037370	G	T	87037370	3	4	732	1	0	0	0	0	1	0	0	0	43	1232	43	4	614	4	ABCB4	7	87037370	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	32426874	87037370	72101293	24	64841										
FAM83A	0	genome.wustl.edu	37	chr8	124221764	124221764	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cctgaccttgttgtttcacaGctgacggctgagatgaggtt	12	9	1	4			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	8	124221764	124221764	G	A	SNP	FAM83A	ENST00000522648	human	ensembl	69_37n	1	known	splice_site	c.875-1	e4-1	0.000	-	-	-	no_errors	FAM83A	HGNC	ENSG00000147689	36	0	0	45	24	34.78	-	-	-	A	124221764	G	A	124221764	5	1	732	1	0	0	0	0	0	0	1	0	5678	986	34	4		4	FAM83A	8	124221764	Splice_Site	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		124221764	22142258	25	64842										
DOCK8	0	genome.wustl.edu	37	chr9	390476	390476	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gtggttcttatttagcatttCcatgaggagcttgcccttca	9	9	2	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	9	390476	390476	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	69_37n	1	known	silent	c.2880	p.F960	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	99	0	0	134	23	14.65	-	-	-	T	390476	C	T	390476	2	4	732	1	0	0	0	0	0	0	0	1	4728	854	30	2		2	DOCK8	9	390476	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		390476	140822955	26	64843										
SPTAN1	0	genome.wustl.edu	37	chr9	131367318	131367318	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gtgtctcgcctttagagatgCtgatgaaaccaaagaatgga	11	7	1	4			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	9	131367318	131367318	C	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.3725	p.A1242G	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	22	0	0	22	6	21.43	-	-	-	G	131367318	C	G	131367318	3	3	732	1	0	0	0	0	1	0	0	0	15208	797	28	4	3839	4	SPTAN1	9	131367318	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	130976842	131367318	9846113	27	64844										
PMPCA	0	genome.wustl.edu	37	chr9	139313014	139313014	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tccgtccctgcaggaggaggActtcatcccctttgcagtgt	11	13	1	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	9	139313014	139313014	A	C	SNP	PMPCA	ENST00000371717	human	ensembl	69_37n	1	known	missense	c.998	p.D333A	0.999	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	PMPCA	HGNC	ENSG00000165688	23	0	0	25	6	19.35	-	-	-	C	139313014	A	C	139313014	3	2	732	1	0	0	0	0	1	0	0	0	12214	275	10	5	1032	5	PMPCA	9	139313014	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09	7945696	139313014	1900417	28	64845										
FAM166A	0	genome.wustl.edu	37	chr9	140138642	140138642	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccggggatgaaccccatgtaGaaggggatcaggccttggct	15	10	1	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	9	140138642	140138642	G	C	SNP	FAM166A	ENST00000344774	human	ensembl	69_37n	-1	known	missense	c.846	p.F282L	1.000	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163	37	0	0	46	7	12.96	-	-	-	C	140138642	G	C	140138642	3	2	732	1	0	0	0	0	1	0	0	0	5521	933	33	2	115	2	FAM166A	9	140138642	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	825628	140138642	1074789	29	64846										
ALKBH3	0	genome.wustl.edu	37	chr11	43940636	43940636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aaagagtgaagatacccttgGatcatgggaccttgttaatc	10	7	1	3			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	11	43940636	43940636	G	A	SNP	ALKBH3	ENST00000302708	human	ensembl	69_37n	1	known	missense	c.718	p.D240N	1.000	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199	43	0	0	46	15	24.59	-	-	-	A	43940636	G	A	43940636	3	1	732	1	0	0	0	0	1	0	0	0	528	1174	41	2	748	2	ALKBH3	11	43940636	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		43940636	91065880	30	64847										
GSTP1	0	genome.wustl.edu	37	chr11	67352214	67352214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	caccctgtaccagtccaataCcatcctgcgtcacctgggcc	7	18	1	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	11	67352214	67352214	C	G	SNP	GSTP1	ENST00000398606	human	ensembl	69_37n	1	known	missense	c.203	p.T68S	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_pi	-	no_errors	GSTP1	HGNC	ENSG00000084207	15	0	0	14	6	30	-	-	-	G	67352214	C	G	67352214	3	3	732	1	0	0	0	0	1	0	0	0	6895	507	18	4	217	4	GSTP1	11	67352214	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	23411578	67352214	67654302	31	64848										
STARD10	0	genome.wustl.edu	37	chr11	72468901	72468901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccgtctggatggacacagctCggaccaagtctttccgaggt	12	12	2	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	11	72468901	72468901	C	T	SNP	STARD10	ENST00000334805	human	ensembl	69_37n	-1	known	missense	c.488	p.R163Q	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD10	HGNC	ENSG00000214530	36	0	0	47	13	21.31	-	-	-	T	72468901	C	T	72468901	3	4	732	1	0	0	0	0	1	0	0	0	15346	884	31	1	399	1	STARD10	11	72468901	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	5116687	72468901	62537615	32	64849										
PANX3	0	genome.wustl.edu	37	chr11	124489712	124489712	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gtgtcttatgtgtgttgaagGatacaaccacccagaagcac	10	9	1	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	11	124489712	124489712	G	C	SNP	PANX3	ENST00000284288	human	ensembl	69_37n	1	known	missense	c.1060	p.D354H	1.000	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143	41	0	0	34	16	32	-	-	-	C	124489712	G	C	124489712	3	2	732	1	0	0	0	0	1	0	0	0	11495	1174	41	2	1074	2	PANX3	11	124489712	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	52020811	124489712	10516804	33	64850										
NCAPD3	0	genome.wustl.edu	37	chr11	134090556	134090556	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccagtctctatgatctctgcTtctatgctgggatccaaagg	9	11	3	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	11	134090556	134090556	T	A	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	missense	c.129	p.E43D	1.000	pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	43	0	0	103	12	10.34	-	-	-	A	134090556	T	A	134090556	3	1	732	1	0	0	0	0	1	0	0	0	10278	1606	56	5	4503	5	NCAPD3	11	134090556	Missense_Mutation	SNP	T	TCGA-D8-A27M-01A-11D-A16D-09	9600844	134090556	915960	34	64851										
MYO16	0	genome.wustl.edu	37	chr13	109496701	109496701	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tttcctgtagcagtcccctgGtgttaccaattgccaagcaa	8	12	0	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	13	109496701	109496701	G	C	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.1042	p.V348L	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	39	0	0	44	10	18.52	-	-	-	C	109496701	G	C	109496701	3	2	732	1	0	0	0	0	1	0	0	0	10136	1261	44	4	1076	4	MYO16	13	109496701	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		109496701	5673177	35	64852										
TJP1	0	genome.wustl.edu	37	chr15	30011076	30011076	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ttgtcatcataatatgaccaCtgttcttcatacatggggac	7	9	4	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	15	30011076	30011076	C	G	SNP	TJP1	ENST00000346128	human	ensembl	69_37n	-1	known	missense	c.3270	p.Q1090H	0.990	NULL	pfam_PDZ,pfam_ZU5,pfam_Guanylate_kin,pfam_SH3_2,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	87	0	0	61	33	35.11	-	-	-	G	30011076	C	G	30011076	3	3	732	1	0	0	0	0	1	0	0	0	16024	564	20	4	2008	4	TJP1	15	30011076	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		30011076	72520316	36	64853										
C15orf53	0	genome.wustl.edu	37	chr15	38990578	38990578	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccagaagtggcttccagcccCtcctacctaactgtgccccg	8	18	0	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	15	38990578	38990578	C	G	SNP	C15orf53	ENST00000318792	human	ensembl	69_37n	1	known	silent	c.372	p.P124	0.000	NULL	NULL	-	no_errors	C15orf53	HGNC	ENSG00000175779	20	0	0	11	8	42.11	-	-	-	G	38990578	C	G	38990578	2	3	732	1	0	0	0	0	0	0	0	1	1813	668	24	4		4	C15orf53	15	38990578	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	8979502	38990578	63540814	37	64854										
ANPEP	0	genome.wustl.edu	37	chr15	90342682	90342682	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ggtctctctgcagctgagtcTgaatcttcctccagttctct	8	13	5	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	15	90342682	90342682	T	G	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	missense	c.1928	p.Q643P	0.988	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	48	0	0	52	26	33.33	-	-	-	G	90342682	T	G	90342682	3	3	732	1	0	0	0	0	1	0	0	0	709	1580	55	5	1011	5	ANPEP	15	90342682	Missense_Mutation	SNP	T	TCGA-D8-A27M-01A-11D-A16D-09	51352104	90342682	12188710	38	64855										
ZNF263	0	genome.wustl.edu	37	chr16	3336103	3336103	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	gatcctagtaagagggccctCtccagggacacggtgcagga	14	11	1	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	16	3336103	3336103	C	T	SNP	ZNF263	ENST00000219069	human	ensembl	69_37n	1	known	silent	c.723	p.L241	0.828	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194	41	0	0	55	12	17.91	-	-	-	T	3336103	C	T	3336103	2	4	732	1	0	0	0	0	0	0	0	1	17899	900	32	2		2	ZNF263	16	3336103	Silent	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		3336103	87018650	39	64856										
ADCY9	0	genome.wustl.edu	37	chr16	4057514	4057514	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aggcctctgcacagctgcagCgagactccttggctctctga	11	14	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	16	4057514	4057514	C	G	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.1739	p.R580P	0.063	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	32	0	0	23	10	30.3	-	-	-	G	4057514	C	G	4057514	3	3	732	1	0	0	0	0	1	0	0	0	301	768	27	3	2358	3	ADCY9	16	4057514	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	721411	4057514	86297239	40	64857										
FTSJD1	0	genome.wustl.edu	37	chr16	71318994	71318994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	aacaatgttcaaacatagtaAacatctttagaacaaaagag	5	6	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	16	71318994	71318994	A	C	SNP	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	missense	c.830	p.F277C	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	20	0	0	37	13	26	-	-	-	C	71318994	A	C	71318994	3	2	732	1	0	0	0	0	1	0	0	0	6139	14	1	5	1486	5	FTSJD1	16	71318994	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09	67261480	71318994	19035759	41	64858										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	60	0	0	35	21	37.5	-	-	-	A	7578263	G	A	7578263	4	1	732	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		7578263	73616947	42	64859										
BRCA1	0	genome.wustl.edu	37	chr17	41223090	41223090	+	Frame_Shift_Del	DEL	G	G	-													0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cagtagtatgagcagcagctGgactctgggcagattctgca							TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	17	41223090	41223090	G	-	DEL	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	frame_shift_del	c.4904	p.P1635fs	0.000	pirsf_BRCA1,superfamily_BRCT_dom	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	50	0	0	49	23	31.94	-	-	-	-	41223090	G	-	41223090	7	5	732	1	0	1	0	1	0	0	0	0	1506	1348	47	0	786	0	BRCA1	17	41223090	Frame_Shift_Del	DEL	G	TCGA-D8-A27M-01A-11D-A16D-09	33644827	41223090	39972120	43	64860										
OTOP2	0	genome.wustl.edu	37	chr17	72920980	72920980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tcttctacctcctccgaaccGtgcgctgcccctgcgcggta	9	18	2	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	17	72920980	72920980	G	A	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	missense	c.253	p.V85M	0.657	NULL	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	9	0	0	6	4	40	-	-	-	A	72920980	G	A	72920980	3	1	732	1	0	0	0	0	1	0	0	0	11379	1145	40	1	255	1	OTOP2	17	72920980	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	31697890	72920980	8274230	44	64861										
LILRA1	0	genome.wustl.edu	37	chr19	55106797	55106797	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cgcaggtggtcgtacaggtgCtatgcttatgactcgaactc	12	10	0	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	19	55106797	55106797	C	A	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	1	known	nonsense	c.591	p.C197*	0.137	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	83	0	0	79	32	28.83	-	-	-	A	55106797	C	A	55106797	4	1	732	1	0	0	0	0	0	1	0	0	8839	805	28	4	605	4	LILRA1	19	55106797	Nonsense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09		55106797	4022186	45	64862										
ATP9A	0	genome.wustl.edu	37	chr20	50238710	50238710	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	tgtcccctgtcagcatccaaAcctgaaatcatggcgtgaca	8	13	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	20	50238710	50238710	A	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.2018	p.V673D	0.998	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	30	0	0	30	21	41.18	-	-	-	T	50238710	A	T	50238710	3	4	732	1	0	0	0	0	1	0	0	0	1202	57	2	5	1165	5	ATP9A	20	50238710	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09		50238710	12786810	46	64863										
TCF20	0	genome.wustl.edu	37	chr22	42564676	42564676	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ccctcacccccgctccgactGctctgtgctgaggctgcctt	9	19	2	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	22	42564676	42564676	G	T	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.5866	p.Q1956K	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	18	0	0	23	10	30.3	-	-	-	T	42564676	G	T	42564676	3	4	732	1	0	0	0	0	1	0	0	0	15785	1328	46	4	42	4	TCF20	22	42564676	Missense_Mutation	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		42564676	8739890	47	64864										
SMC1B	0	genome.wustl.edu	37	chr22	45802482	45802482	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ataagctctcctgaagtgctGatttcctcaaaaaactgggt	8	9	2	2			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	22	45802482	45802482	G	A	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	silent	c.474	p.I158	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	57	0	0	99	18	15.25	-	-	-	A	45802482	G	A	45802482	2	1	732	1	0	0	0	0	0	0	0	1	14871	1280	45	2		2	SMC1B	22	45802482	Silent	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	3237806	45802482	5502084	48	64865										
GYG2	0	genome.wustl.edu	37	chrX	2761348	2761348	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ctgaggagacacaggctgacGaggaagctggtggtgttgat	17	6	0	4			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	X	2761348	2761348	G	A	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	silent	c.195	p.T65	0.908	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	34	0	0	44	6	11.76	-	-	-	A	2761348	G	A	2761348	2	1	732	1	0	0	0	0	0	0	0	1	6957	1045	37	1		1	GYG2	23	2761348	Silent	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09		2761348	152509212	49	64866										
ZNF81	0	genome.wustl.edu	37	chrX	47774912	47774912	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	ttcacccagaggtcacatttCtttgctcctcaaaaaattca	4	12	5	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	X	47774912	47774912	C	A	SNP	ZNF81	ENST00000338637	human	ensembl	69_37n	1	known	missense	c.867	p.F289L	0.004	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779	21	0	0	23	7	23.33	-	-	-	A	47774912	C	A	47774912	3	1	732	1	0	0	0	0	1	0	0	0	18267	912	32	2	881	2	ZNF81	23	47774912	Missense_Mutation	SNP	C	TCGA-D8-A27M-01A-11D-A16D-09	45013564	47774912	107495648	50	64867										
ZNF75D	0	genome.wustl.edu	37	chrX	134426226	134426226	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cctctttcatatacaggctgGgtttctttgtgagtgttcca	9	9	3	1			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	X	134426226	134426226	G	T	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	silent	c.585	p.T195	0.029	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	65	0	0	103	16	13.45	-	-	-	T	134426226	G	T	134426226	2	4	732	1	0	0	0	0	0	0	0	1	18228	1219	43	4		4	ZNF75D	23	134426226	Silent	SNP	G	TCGA-D8-A27M-01A-11D-A16D-09	86651314	134426226	20844334	51	64868										
PLXNB3	0	genome.wustl.edu	37	chrX	153040401	153040401	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.841065505936394	1.10092715231788	1.37615894039735	0.917439293598234	1	1	0	cgggatccccttcctggactAccgcacctacgccgagcgcg	11	18	0	0			TCGA-D8-A27M-01A-11D-A16D-09	TCGA-D8-A27M-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cb9257f9-ca3f-4c14-a680-6632175dd526	d57d98db-8901-497c-b97e-1fc813a6d1ab	X	153040401	153040401	A	G	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	missense	c.4067	p.Y1356C	0.998	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	8	0	0	6	4	40	-	-	-	G	153040401	A	G	153040401	3	3	732	1	0	0	0	0	1	0	0	0	12199	391	14	5	4206	5	PLXNB3	23	153040401	Missense_Mutation	SNP	A	TCGA-D8-A27M-01A-11D-A16D-09	18614175	153040401	2230159	52	64869										
ZDHHC18	0	genome.wustl.edu	37	chr1	27176930	27176930	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ggtcacccacctgacgttgcGtgagttgtgggtgagggcag	17	9	1	3			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	27176930	27176930	G	A	SNP	ZDHHC18	ENST00000374142	human	ensembl	69_37n	1	known	splice_site	c.784+1	e4+1	1.000	-	-	-	no_errors	ZDHHC18	HGNC	ENSG00000204160	57	0	0	58	19	24.68	-	-	-	A	27176930	G	A	27176930	5	1	733	1	0	0	0	0	0	0	1	0	17704	1159	40	1	799	1	ZDHHC18	1	27176930	Splice_Site	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		27176930	222073691	1	64870										
RBBP4	0	genome.wustl.edu	37	chr1	33138484	33138484	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tctgtatcagaagacaatatCatgcaagtgtggcaaatggt	10	6	3	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	33138484	33138484	C	T	SNP	RBBP4	ENST00000463378	human	ensembl	69_37n	1	putative	missense	c.473	p.S158L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RBBP4	HGNC	ENSG00000162521	89	0	0	70	32	31.37	-	-	-	T	33138484	C	T	33138484	3	4	733	1	0	0	0	0	1	0	0	0	13184	816	29	2	1236	2	RBBP4	1	33138484	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	5961554	33138484	216112137	2	64871										
CPT2	0	genome.wustl.edu	37	chr1	53676854	53676854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cggccgcactgagaccatccGcccggcctccgtctatacaa	9	18	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	53676854	53676854	G	A	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	1	known	missense	c.1508	p.R503H	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	24	0	0	13	7	35	-	-	-	A	53676854	G	A	53676854	3	1	733	1	0	0	0	0	1	0	0	0	3864	1087	38	1	1522	1	CPT2	1	53676854	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	20538370	53676854	195573767	3	64872										
SERBP1	0	genome.wustl.edu	37	chr1	67891834	67891834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ttacctatcaactgaaaattCgcctccttcacccttttctt	2	14	3	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	67891834	67891834	C	T	SNP	SERBP1	ENST00000370995	human	ensembl	69_37n	-1	known	missense	c.448	p.E150K	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864	112	0	0	76	43	36.13	-	-	-	T	67891834	C	T	67891834	3	4	733	1	0	0	0	0	1	0	0	0	14163	893	31	1	806	1	SERBP1	1	67891834	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	14214980	67891834	181358787	4	64873										
CFHR5	0	genome.wustl.edu	37	chr1	196952137	196952137	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cctgtgaatataattttgtgTctccttcaaaatccttttgg	6	8	2	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	196952137	196952137	T	G	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	missense	c.253	p.S85A	0.007	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	116	0	0	136	31	18.56	-	-	-	G	196952137	T	G	196952137	3	3	733	1	0	0	0	0	1	0	0	0	3317	1667	58	5	187	5	CFHR5	1	196952137	Missense_Mutation	SNP	T	TCGA-D8-A27N-01A-11D-A16D-09	129060303	196952137	52298484	5	64874										
ABCG8	0	genome.wustl.edu	37	chr2	44071747	44071747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gtcagagacctcaactaccaGgtagaggcacgcctgggttc	12	12	2	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	2	44071747	44071747	G	A	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	1	known	silent	c.165	p.Q55	1.000	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	32	0	0	14	12	46.15	-	-	-	A	44071747	G	A	44071747	2	1	733	1	0	0	0	0	0	0	0	1	72	1014	35	4		4	ABCG8	2	44071747	Silent	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		44071747	199127626	6	64875										
DIS3L2	0	genome.wustl.edu	37	chr2	233164783	233164783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tcactctggaccacgagaccGgattgcctcaaggatgtcat	10	12	4	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	2	233164783	233164783	G	A	SNP	DIS3L2	ENST00000325385	human	ensembl	69_37n	1	known	missense	c.1693	p.G565R	0.999	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L2	HGNC	ENSG00000144535	44	0	0	35	15	30	-	-	-	A	233164783	G	A	233164783	3	1	733	1	0	0	0	0	1	0	0	0	4573	1117	39	1	1743	1	DIS3L2	2	233164783	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	189093036	233164783	10034590	7	64876										
CHCHD6	0	genome.wustl.edu	37	chr3	126423158	126423158	+	Frame_Shift_Del	DEL	G	G	-													0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gccctgcggcatctcgccatGgggagcacggagagcagcga							TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	126423158	126423158	G	-	DEL	CHCHD6	ENST00000290913	human	ensembl	69_37n	1	known	frame_shift_del	c.3	p.S3fs	1.000	NULL	pfam_DUF737	-	no_errors	CHCHD6	HGNC	ENSG00000159685	11	0	0	4	2	33.33	-	-	-	-	126423158	G	-	126423158	7	5	733	1	0	1	0	1	0	0	0	0	3349	1348	47	0	5	0	CHCHD6	3	126423158	Frame_Shift_Del	DEL	G	TCGA-D8-A27N-01A-11D-A16D-09		126423158	71599272	8	64877										
PLD1	0	genome.wustl.edu	37	chr3	171455363	171455363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ttccacttccagaacttgtgCttttattggacagccggaga	9	10	0	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	171455363	171455363	C	T	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.247	p.A83T	0.345	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	84	0	0	86	26	23.21	-	-	-	T	171455363	C	T	171455363	3	4	733	1	0	0	0	0	1	0	0	0	12119	797	28	4	3077	4	PLD1	3	171455363	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	45032205	171455363	26567067	9	64878										
VPS8	0	genome.wustl.edu	37	chr3	184570300	184570300	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ctgtttagtttacagatgatCcaactcttgcaatttgcaac	6	9	1	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	184570300	184570300	C	G	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	1	known	missense	c.766	p.P256A	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	82	0	0	22	22	50	-	-	-	G	184570300	C	G	184570300	3	3	733	1	0	0	0	0	1	0	0	0	17315	855	30	2	800	2	VPS8	3	184570300	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	13114937	184570300	13452130	10	64879										
MFAP3L	0	genome.wustl.edu	37	chr4	170912535	170912535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tttcggggttggtattagacAtggctttcgtaaataatgca	11	5	0	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	4	170912535	170912535	A	T	SNP	MFAP3L	ENST00000361618	human	ensembl	69_37n	-1	known	missense	c.1224	p.H408Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3L	HGNC	ENSG00000198948	62	0	0	72	28	28	-	-	-	T	170912535	A	T	170912535	3	4	733	1	0	0	0	0	1	0	0	0	9587	214	8	5	9	5	MFAP3L	4	170912535	Missense_Mutation	SNP	A	TCGA-D8-A27N-01A-11D-A16D-09		170912535	20241741	11	64880										
ADAMTS16	0	genome.wustl.edu	37	chr5	5242237	5242237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cgcttggggaccgagaagcaGccccctgcccagcccagcta	12	17	0	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	5	5242237	5242237	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	missense	c.2595	p.Q865H	0.012	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	38	0	0	31	4	11.43	-	-	-	T	5242237	G	T	5242237	3	4	733	1	0	0	0	0	1	0	0	0	261	962	34	4	2661	4	ADAMTS16	5	5242237	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		5242237	175673023	12	64881										
KLHL3	0	genome.wustl.edu	37	chr5	136969761	136969762	+	Frame_Shift_Del	DEL	TA	TA	-													0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gggtgctcatgtccgccacgTatatccattcattggtcgct							TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	5	136969761	136969762	TA	-	DEL	KLHL3	ENST00000309755	human	ensembl	69_37n	-1	known	frame_shift_del	c.1415_1414	p.Y472fs	1.000:0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021	17	0	0	25	10	27.78	-	-	-	-	136969762	TA	-	136969761	7	5	733	1	0	1	0	1	0	0	0	0	8436	1638	57	0	364	0	KLHL3	5	136969761	Frame_Shift_Del	DEL	TA	TCGA-D8-A27N-01A-11D-A16D-09	131727524	136969761	43945499	13	64882										
VARS	0	genome.wustl.edu	37	chr6	31749701	31749701	+	Frame_Shift_Del	DEL	C	C	-													0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gggcctccgcctcattgcgtCcactcacccagtaccgccca							TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	6	31749701	31749701	C	-	DEL	VARS	ENST00000375663	human	ensembl	69_37n	-1	known	frame_shift_del	c.2270	p.G757fs	1.000	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS	HGNC	ENSG00000204394	10	0	0	4	2	33.33	-	-	-	-	31749701	C	-	31749701	7	5	733	1	0	1	0	1	0	0	0	0	17220	855	30	0	1572	0	VARS	6	31749701	Frame_Shift_Del	DEL	C	TCGA-D8-A27N-01A-11D-A16D-09		31749701	139365366	14	64883										
USP42	0	genome.wustl.edu	37	chr7	6175584	6175584	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gtcatcaatgagatgcggcgTaagtattaactattgtagtt	10	5	2	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	6175584	6175584	T	A	SNP	USP42	ENST00000306177	human	ensembl	69_37n	1	known	splice_site	c.553+2	e3+2	1.000	-	-	-	no_errors	USP42	HGNC	ENSG00000106346	71	0	0	68	25	26.88	-	-	-	A	6175584	T	A	6175584	5	1	733	1	0	0	0	0	0	0	1	0	17170	1652	57	5	565	5	USP42	7	6175584	Splice_Site	SNP	T	TCGA-D8-A27N-01A-11D-A16D-09		6175584	152963079	15	64884										
MYO1G	0	genome.wustl.edu	37	chr7	45004603	45004603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ccagtcctgacgaagcccttGcagggcccccatggcggcca	12	17	0	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	45004603	45004603	G	T	SNP	MYO1G	ENST00000258787	human	ensembl	69_37n	-1	known	missense	c.2467	p.Q823K	0.999	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286	13	0	0	12	9	42.86	-	-	-	T	45004603	G	T	45004603	3	4	733	1	0	0	0	0	1	0	0	0	10146	1328	46	4	609	4	MYO1G	7	45004603	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	38829019	45004603	114134060	16	64885										
AKAP9	0	genome.wustl.edu	37	chr7	91682267	91682267	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	aagccataagtgaaactagcAgtcaggtaacctccttatat	7	9	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	91682267	91682267	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.5632	p.S1878R	0.754	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	29	0	0	35	10	22.22	-	-	-	C	91682267	A	C	91682267	3	2	733	1	0	0	0	0	1	0	0	0	459	188	7	5	5682	5	AKAP9	7	91682267	Missense_Mutation	SNP	A	TCGA-D8-A27N-01A-11D-A16D-09	46677664	91682267	67456396	17	64886										
ZC3HC1	0	genome.wustl.edu	37	chr7	129664182	129664182	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	attcaggcaccagaggtaagCgctctggtcgcccctcaagg	12	13	3	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	129664182	129664182	C	A	SNP	ZC3HC1	ENST00000358303	human	ensembl	69_37n	-1	known	missense	c.941	p.R314L	1.000	pfam_NIPA/Rsm1	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	23	0	0	20	15	41.67	-	-	-	A	129664182	C	A	129664182	3	1	733	1	0	0	0	0	1	0	0	0	17673	768	27	3	583	3	ZC3HC1	7	129664182	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	37981915	129664182	29474481	18	64887										
CYP7B1	0	genome.wustl.edu	37	chr8	65509378	65509378	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	aaaaaatcggcctggacattTgctggttccagttccaaacg	9	10	0	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	8	65509378	65509378	T	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	nonsense	c.1342	p.K448*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	40	0	0	25	14	35.9	-	-	-	A	65509378	T	A	65509378	4	1	733	1	0	0	0	0	0	1	0	0	4228	1821	63	5	182	5	CYP7B1	8	65509378	Nonsense_Mutation	SNP	T	TCGA-D8-A27N-01A-11D-A16D-09		65509378	80854644	19	64888										
PKHD1L1	0	genome.wustl.edu	37	chr8	110424512	110424512	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	aggaacatattaacagagggCagaagacagctgaaaccgat	11	7	0	4			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	8	110424512	110424512	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.2104	p.Q702K	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	69	0	0	46	23	33.33	-	-	-	A	110424512	C	A	110424512	3	1	733	1	0	0	0	0	1	0	0	0	12046	711	25	4	2182	4	PKHD1L1	8	110424512	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	44915134	110424512	35939510	20	64889										
VLDLR	0	genome.wustl.edu	37	chr9	2648254	2648254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cttgattctaagttgcacatGttatccagcgtggacttgaa	9	8	1	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	9	2648254	2648254	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.1869	p.M623I	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	58	0	0	34	23	40.35	-	-	-	A	2648254	G	A	2648254	3	1	733	1	0	0	0	0	1	0	0	0	17271	1377	48	4	1919	4	VLDLR	9	2648254	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		2648254	138565177	21	64890										
PAPPA	0	genome.wustl.edu	37	chr9	119115961	119115961	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	caggagggagcttgtgttccTgtgacctgtgacccacctcc	12	13	0	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	9	119115961	119115961	T	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	silent	c.4236	p.P1412	0.918	superfamily_Complement_control_module	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	86	0	0	58	29	33.33	-	-	-	A	119115961	T	A	119115961	2	1	733	1	0	0	0	0	0	0	0	1	11505	1567	55	5		5	PAPPA	9	119115961	Silent	SNP	T	TCGA-D8-A27N-01A-11D-A16D-09	116467707	119115961	22097470	22	64891										
TRUB1	0	genome.wustl.edu	37	chr10	116710886	116710886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	aagcggaacaaaaatgttgaCcagtatgttgtcagggtcca	11	7	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	10	116710886	116710886	C	T	SNP	TRUB1	ENST00000298746	human	ensembl	69_37n	1	known	missense	c.419	p.T140I	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832	206	0	0	135	59	30.41	-	-	-	T	116710886	C	T	116710886	3	4	733	1	0	0	0	0	1	0	0	0	16698	507	18	4	429	4	TRUB1	10	116710886	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		116710886	18823861	23	64892										
OR51E2	0	genome.wustl.edu	37	chr11	4703136	4703136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ccatgacaacacgcacaatgGgatgaaggctgtttccaaag	10	10	0	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	4703136	4703136	G	T	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.806	p.P269H	0.071	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	41	0	0	27	10	27.03	-	-	-	T	4703136	G	T	4703136	3	4	733	1	0	0	0	0	1	0	0	0	11168	1232	43	4	160	4	OR51E2	11	4703136	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		4703136	130303380	24	64893										
APLNR	0	genome.wustl.edu	37	chr11	57003529	57003529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gcatggaggtgcaggcctggCggaagcgggggtcgaaaaag	20	7	0	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	57003529	57003529	C	T	SNP	APLNR	ENST00000257254	human	ensembl	69_37n	-1	known	missense	c.950	p.R317H	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_APJ_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	APLNR	HGNC	ENSG00000134817	23	0	0	5	9	64.29	-	-	-	T	57003529	C	T	57003529	3	4	733	1	0	0	0	0	1	0	0	0	779	768	27	1	196	1	APLNR	11	57003529	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	52300393	57003529	78002987	25	64894										
SLC22A11	0	genome.wustl.edu	37	chr11	64338508	64338508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	gtcactgtggaaagtacctcGctctagaaattgtgcctgca	10	10	2	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	64338508	64338508	G	A	SNP	SLC22A11	ENST00000301891	human	ensembl	69_37n	1	known	silent	c.1647	p.S549	0.973	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	52	0	0	61	16	20.51	-	-	-	A	64338508	G	A	64338508	2	1	733	1	0	0	0	0	0	0	0	1	14531	1074	38	1		1	SLC22A11	11	64338508	Silent	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	7334979	64338508	70668008	26	64895										
PCF11	0	genome.wustl.edu	37	chr11	82877694	82877694	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	actgaaccaaaggagaatgtAgaaaactggcaaagttccaa	9	7	0	3			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	82877694	82877694	A	G	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	1	known	silent	c.1755	p.V585	0.521	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	10	0	0	1	7	87.5	-	-	-	G	82877694	A	G	82877694	2	3	733	1	0	0	0	0	0	0	0	1	11646	407	15	5		5	PCF11	11	82877694	Silent	SNP	A	TCGA-D8-A27N-01A-11D-A16D-09	18539186	82877694	52128822	27	64896										
PTGES3	0	genome.wustl.edu	37	chr12	57065615	57065615	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ataaaattgatctgtccgttCttttatgcttggaatcctaa	6	7	2	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	12	57065615	57065615	C	G	SNP	PTGES3	ENST00000262033	human	ensembl	69_37n	-1	known	missense	c.203	p.R68T	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTGES3	HGNC	ENSG00000110958	54	0	0	51	19	27.14	-	-	-	G	57065615	C	G	57065615	3	3	733	1	0	0	0	0	1	0	0	0	12829	913	32	2	299	2	PTGES3	12	57065615	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		57065615	76786280	28	64897										
DNAJC17	0	genome.wustl.edu	37	chr15	41060225	41060225	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tggcgcatgcgcatcatgacGaggctctcgtagtccctctc	11	14	3	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	15	41060225	41060225	G	A	SNP	DNAJC17	ENST00000220496	human	ensembl	69_37n	-1	known	silent	c.828	p.L276	0.344	NULL	pfam_DnaJ_N,pfam_RRM_dom,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC17	HGNC	ENSG00000104129	26	0	0	20	9	31.03	-	-	-	A	41060225	G	A	41060225	2	1	733	1	0	0	0	0	0	0	0	1	4671	1045	37	1		1	DNAJC17	15	41060225	Silent	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09		41060225	61471167	29	64898										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	20	0	0	5	15	75	-	-	-	T	7578406	C	T	7578406	3	4	733	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		7578406	73616804	30	64899										
SAMD14	0	genome.wustl.edu	37	chr17	48191567	48191567	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tcacctcatctgaagactgaGacagcgtgtggtaggggtaa	13	8	3	3			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	48191567	48191567	G	A	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337F	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	34	0	0	31	80	72.07	-	-	-	A	48191567	G	A	48191567	3	1	733	1	0	0	0	0	1	0	0	0	13905	942	33	2	339	2	SAMD14	17	48191567	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	40613161	48191567	33003643	31	64900										
GH2	0	genome.wustl.edu	37	chr17	61958411	61958411	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	atttctgctgcgttttcaccCtgttggaaggtgttggaata	11	7	2	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	61958411	61958411	C	A	SNP	GH2	ENST00000332800	human	ensembl	69_37n	-1	known	missense	c.269	p.R90M	0.961	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	70	0	0	179	48	21.15	-	-	-	A	61958411	C	A	61958411	3	1	733	1	0	0	0	0	1	0	0	0	6420	681	24	4	733	4	GH2	17	61958411	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	13766844	61958411	19236799	32	64901										
C17orf28	0	genome.wustl.edu	37	chr17	72951961	72951961	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ggtggtggttctgggcggcaGagaagaggaaccaggtggtg	21	5	1	2			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	72951961	72951961	G	A	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	missense	c.1562	p.S521F	1.000	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	46	0	0	149	40	21.16	-	-	-	A	72951961	G	A	72951961	3	1	733	1	0	0	0	0	1	0	0	0	1868	942	33	2	832	2	C17orf28	17	72951961	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	10993550	72951961	8243249	33	64902										
ENOSF1	0	genome.wustl.edu	37	chr18	674341	674341	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ggaaggagtttcttccaaacTtcaccatctggatactggtg	10	9	3	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	18	674341	674341	T	A	SNP	ENOSF1	ENST00000340116	human	ensembl	69_37n	-1	known	missense	c.1317	p.E439D	0.988	NULL	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199	118	0	0	146	17	10.43	-	-	-	A	674341	T	A	674341	3	1	733	1	0	0	0	0	1	0	0	0	5162	1606	56	5	39	5	ENOSF1	18	674341	Missense_Mutation	SNP	T	TCGA-D8-A27N-01A-11D-A16D-09		674341	77402907	34	64903										
DSEL	0	genome.wustl.edu	37	chr18	65178341	65178341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	tgatatttccccttcataggGaaggtaaaaaaggtttgtag	10	5	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	18	65178341	65178341	G	C	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	missense	c.3535	p.P1179A	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	79	0	0	34	19	35.85	-	-	-	C	65178341	G	C	65178341	3	2	733	1	0	0	0	0	1	0	0	0	4810	1174	41	2	137	2	DSEL	18	65178341	Missense_Mutation	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	64504000	65178341	12898907	35	64904										
FCAR	0	genome.wustl.edu	37	chr19	55399502	55399502	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cactggccaaggagggagaaCtttctctgccacagcaccaa	10	13	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	19	55399502	55399502	C	A	SNP	FCAR	ENST00000355524	human	ensembl	69_37n	1	known	missense	c.490	p.L164I	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	26	0	0	23	17	42.5	-	-	-	A	55399502	C	A	55399502	3	1	733	1	0	0	0	0	1	0	0	0	5819	565	20	4	504	4	FCAR	19	55399502	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		55399502	3729481	36	64905										
SEPT5	0	genome.wustl.edu	37	chr22	19708187	19708187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	agatccggaagctgaaggagCgggtgagcctgccgtcgcac	16	11	0	3			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	19708187	19708187	C	T	SNP	SEPT5	ENST00000383045	human	ensembl	69_37n	1	known	missense	c.640	p.R214W	0.998	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT5	HGNC	ENSG00000184702	17	0	0	17	6	26.09	-	-	-	T	19708187	C	T	19708187	3	4	733	1	0	0	0	0	1	0	0	0	14155	759	27	1	639	1	SEPT5	22	19708187	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		19708187	31596379	37	64906										
MYH9	0	genome.wustl.edu	37	chr22	36684952	36684952	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	catctcctccacctgctgctCtagggcccgcttggacttct	8	17	3	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	36684952	36684952	C	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	nonsense	c.4591	p.E1531*	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	70	0	0	41	22	34.92	-	-	-	A	36684952	C	A	36684952	4	1	733	1	0	0	0	0	0	1	0	0	10114	922	32	2	1327	2	MYH9	22	36684952	Nonsense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	16976765	36684952	14619614	38	64907										
EIF3L	0	genome.wustl.edu	37	chr22	38273806	38273808	+	In_Frame_Del	DEL	GCA	GCA	-													0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ggggacaagatgttgcgcatGcagaaaggtgacccacaagt							TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	38273806	38273808	GCA	-	DEL	EIF3L	ENST00000425539	human	ensembl	69_37n	1	known	in_frame_del	c.1332_1334	p.Q445in_frame_del	1.000:1.000:1.000	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	39	0	0	33	13	28.26	-	-	-	-	38273808	GCA	-	38273806	7	5	733	1	0	1	0	1	0	0	0	0	5059	1319	46	0	1245	0	EIF3L	22	38273806	In_Frame_Del	DEL	GCA	TCGA-D8-A27N-01A-11D-A16D-09	1588854	38273806	13030760	39	64908										
SBF1	0	genome.wustl.edu	37	chr22	50906107	50906107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	cctctctgtggcatcctccaCgcgcgtcgtttcctgctggg	11	16	1	0			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	50906107	50906107	C	T	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	missense	c.292	p.V98M	0.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	31	0	0	29	4	12.12	-	-	-	T	50906107	C	T	50906107	3	4	733	1	0	0	0	0	1	0	0	0	13945	536	19	1	5541	1	SBF1	22	50906107	Missense_Mutation	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09	12632301	50906107	398459	40	64909										
GATA1	0	genome.wustl.edu	37	chrX	48650324	48650324	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ccatatgccggctgggcctaCggcaagacggggctctaccc	13	15	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	X	48650324	48650324	C	T	SNP	GATA1	ENST00000376670	human	ensembl	69_37n	1	known	silent	c.294	p.Y98	0.736	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145	20	0	0	15	7	31.82	-	-	-	T	48650324	C	T	48650324	2	4	733	1	0	0	0	0	0	0	0	1	6303	547	19	1		1	GATA1	23	48650324	Silent	SNP	C	TCGA-D8-A27N-01A-11D-A16D-09		48650324	106620236	41	64910										
NHSL2	0	genome.wustl.edu	37	chrX	71360164	71360164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.621766258859831	1.4367201426025	2.63398692810458	1.24767801857585	0.523809523809524	1	0	ctccctcaagacagctacacGgtagtgcggaaaccaaagcc	9	14	1	1			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	X	71360164	71360164	G	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	silent	c.2766	p.T922	0.001	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	44	0	0	38	16	29.63	-	-	-	A	71360164	G	A	71360164	2	1	733	1	0	0	0	0	0	0	0	1	10484	1103	39	1		1	NHSL2	23	71360164	Silent	SNP	G	TCGA-D8-A27N-01A-11D-A16D-09	22709840	71360164	83910396	42	64911										
MACF1	0	genome.wustl.edu	37	chr1	39775287	39775287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atggccctttggcatcagctGcatgttaacaccaaaagcct	8	12	1	0			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	39775287	39775287	G	A	SNP	MACF1	ENST00000496804	human	ensembl	69_37n	1	known	missense	c.3181	p.A1061T	0.645	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain	-	no_errors	MACF1	HGNC	ENSG00000127603	65	0	0	38	29	43.28	-	-	-	A	39775287	G	A	39775287	3	1	734	1	0	0	0	0	1	0	0	0	9211	1306	46	4	2940	4	MACF1	1	39775287	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09		39775287	209475334	1	64912										
FLG	0	genome.wustl.edu	37	chr1	152285536	152285536	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcctacttgtcctgggccccGatgattgtccctggcccacc	9	17	0	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	152285536	152285536	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	nonsense	c.1826	p.S609*	0.002	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	208	0	0	181	31	14.55	-	-	-	T	152285536	G	T	152285536	4	4	734	1	0	0	0	0	0	1	0	0	5968	1059	37	3	10363	3	FLG	1	152285536	Nonsense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09	112510249	152285536	96965085	2	64913										
JTB	0	genome.wustl.edu	37	chr1	153949711	153949712	+	Frame_Shift_Del	DEL	CC	CC	-													0	0	1	0	NA	0	1	1	0	ccctgggggaggccaggcctCccggcacccgcaagcatgga							TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	153949711	153949712	CC	-	DEL	JTB	ENST00000271843	human	ensembl	69_37n	-1	known	frame_shift_del	c.18_17	p.G6fs	0.997:0.986	NULL	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543	23	0	0	13	7	35	-	-	-	-	153949712	CC	-	153949711	7	5	734	1	0	1	0	1	0	0	0	0	8021	842	30	0	442	0	JTB	1	153949711	Frame_Shift_Del	DEL	CC	TCGA-D8-A27P-01A-11D-A16D-09	1664175	153949711	95300910	3	64914										
ACTN2	0	genome.wustl.edu	37	chr1	236908040	236908040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctggcagcgcaccaggaccGcgtggagcagatcgcagcca	14	15	0	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	1	236908040	236908040	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	missense	c.1370	p.R457H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	31	0	0	28	9	24.32	-	-	-	A	236908040	G	A	236908040	3	1	734	1	0	0	0	0	1	0	0	0	205	1087	38	1	1416	1	ACTN2	1	236908040	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09	82958329	236908040	12342581	4	64915										
FBXO11	0	genome.wustl.edu	37	chr2	48049368	48049368	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tacgcttaccataaatgtcaTttccttcaataaggcctcgt	5	11	2	0			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	2	48049368	48049368	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	missense	c.1691	p.N564S	1.000	superfamily_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	44	0	0	39	12	23.53	-	-	-	C	48049368	T	C	48049368	3	2	734	1	0	0	0	0	1	0	0	0	5773	1493	52	5	1226	5	FBXO11	2	48049368	Missense_Mutation	SNP	T	TCGA-D8-A27P-01A-11D-A16D-09		48049368	195150005	5	64916										
SCN3A	0	genome.wustl.edu	37	chr2	165947251	165947251	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gagaactctataaactgggtCgcatcgggatcaaacttttc	9	9	2	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	2	165947251	165947251	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	silent	c.5412	p.A1804	0.046	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	136	0	0	86	29	25.22	-	-	-	T	165947251	C	T	165947251	2	4	734	1	0	0	0	0	0	0	0	1	14006	871	31	1		1	SCN3A	2	165947251	Silent	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09	117897883	165947251	77252122	6	64917										
COLQ	0	genome.wustl.edu	37	chr3	15531117	15531117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agcatgctttgtggccaccaCgcttcttctgatccaggctg	10	13	2	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	3	15531117	15531117	C	T	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	missense	c.134	p.R45H	0.961	NULL	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	78	0	0	54	14	20.59	-	-	-	T	15531117	C	T	15531117	3	4	734	1	0	0	0	0	1	0	0	0	3743	536	19	1	1297	1	COLQ	3	15531117	Missense_Mutation	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09		15531117	182491313	7	64918										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	47	0	0	33	14	29.79	-	-	-	G	178952085	A	G	178952085	3	3	734	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A27P-01A-11D-A16D-09	163420968	178952085	19070345	8	64919										
ZNF595	0	genome.wustl.edu	37	chr4	86041	86042	+	RNA	DEL	AA	AA	-													0	0	1	0	NA	0	1	1	0	acagggtccacaatccactgAatgaacataagagaattcat							TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	4	86041	86042	AA	-	DEL	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005:0.000	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	8	0	0	4	2	33.33	-	-	-	-	86042	AA	-	86041	6	5	734	0	1	1	0	1	0	0	0	0	18121	246	9	0		0	ZNF595	4	86041	RNA	DEL	AA	TCGA-D8-A27P-01A-11D-A16D-09		86041	191068235	9	64920										
NSD1	0	genome.wustl.edu	37	chr5	176637903	176637903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctaaaagtgggaaagtggatGgtctaaaactactgaacaat	10	5	1	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	5	176637903	176637903	G	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.2503	p.G835C	0.993	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	62	0	0	33	12	26.67	-	-	-	T	176637903	G	T	176637903	3	4	734	1	0	0	0	0	1	0	0	0	10742	1348	47	4	2517	4	NSD1	5	176637903	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09		176637903	4277357	10	64921										
NOS3	0	genome.wustl.edu	37	chr7	150698507	150698507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttcctgtccccggccttccgCtaccaggtgcccaccctaac	7	20	0	0			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	150698507	150698507	C	T	SNP	NOS3	ENST00000297494	human	ensembl	69_37n	1	known	silent	c.1422	p.R474	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	38	0	0	22	14	38.89	-	-	-	T	150698507	C	T	150698507	2	4	734	1	0	0	0	0	0	0	0	1	10616	784	28	4		4	NOS3	7	150698507	Silent	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09		150698507	8440156	11	64922										
MLL3	0	genome.wustl.edu	37	chr7	152012425	152012425	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aaaagcgcagagctgttcacTagtaaaaatgaaatgtaagt	9	5	1	2			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	7	152012425	152012425	T	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	splice_site	c.390-2	e4-2	1.000	-	-	-	no_errors	MLL3	HGNC	ENSG00000055609	55	0	0	52	19	26.76	-	-	-	G	152012425	T	G	152012425	5	3	734	1	0	0	0	0	0	0	1	0	9693	1536	53	5	14571	5	MLL3	7	152012425	Splice_Site	SNP	T	TCGA-D8-A27P-01A-11D-A16D-09	1313918	152012425	7126238	12	64923										
PLCE1	0	genome.wustl.edu	37	chr10	96018782	96018782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcattcagtgtcaggagccGcaaggacctgaaggatctgt	12	10	4	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	10	96018782	96018782	G	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.3689	p.R1230H	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	89	0	0	75	18	19.15	-	-	-	A	96018782	G	A	96018782	3	1	734	1	0	0	0	0	1	0	0	0	12108	1087	38	1	4021	1	PLCE1	10	96018782	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09		96018782	39515965	13	64924										
NUMA1	0	genome.wustl.edu	37	chr11	71726685	71726685	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	attagccacctgaagttgctGctgcagaatctccagcttgg	10	11	1	2			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	11	71726685	71726685	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	nonsense	c.1864	p.Q622*	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	46	0	0	33	8	19.51	-	-	-	A	71726685	G	A	71726685	4	1	734	1	0	0	0	0	0	1	0	0	10823	1328	46	4	4535	4	NUMA1	11	71726685	Nonsense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09		71726685	63279831	14	64925										
LAG3	0	genome.wustl.edu	37	chr12	6882468	6882468	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tccaggatctcagccttctgCgaagagcaggggtcacttgg	13	11	3	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	12	6882468	6882468	C	T	SNP	LAG3	ENST00000203629	human	ensembl	69_37n	1	known	nonsense	c.169	p.R57*	0.003	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LAG3	HGNC	ENSG00000089692	32	0	0	17	7	29.17	-	-	-	T	6882468	C	T	6882468	4	4	734	1	0	0	0	0	0	1	0	0	8654	760	27	1	175	1	LAG3	12	6882468	Nonsense_Mutation	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09		6882468	126969427	15	64926										
PLA2G1B	0	genome.wustl.edu	37	chr12	120760099	120760099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggtcgcagttgcaaatgaagGcctcacactctttgtttttg	10	9	2	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	12	120760099	120760099	G	T	SNP	PLA2G1B	ENST00000308366	human	ensembl	69_37n	-1	known	missense	c.344	p.A115D	0.017	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G1B	HGNC	ENSG00000170890	108	0	0	61	38	38.38	-	-	-	T	120760099	G	T	120760099	3	4	734	1	0	0	0	0	1	0	0	0	12068	1203	42	4	106	4	PLA2G1B	12	120760099	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09	113877631	120760099	13091796	16	64927										
PTGDR	0	genome.wustl.edu	37	chr14	52735144	52735144	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gggtactctgtgctctactcCagcctcatggcgctgctggt	12	13	3	0			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	14	52735144	52735144	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	69_37n	1	known	silent	c.612	p.S204	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229	46	0	0	18	15	45.45	-	-	-	T	52735144	C	T	52735144	2	4	734	1	0	0	0	0	0	0	0	1	12821	581	21	4		4	PTGDR	14	52735144	Silent	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09		52735144	54614396	17	64928										
SRP68	0	genome.wustl.edu	37	chr17	74041393	74041393	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgtaagctttgaacaccagAgtcttgaggcctatctcttt	8	10	2	3			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	17	74041393	74041393	A	T	SNP	SRP68	ENST00000307877	human	ensembl	69_37n	-1	known	silent	c.1374	p.T458	0.106	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881	66	0	0	52	22	29.33	-	-	-	T	74041393	A	T	74041393	2	4	734	1	0	0	0	0	0	0	0	1	15247	291	11	5		5	SRP68	17	74041393	Silent	SNP	A	TCGA-D8-A27P-01A-11D-A16D-09		74041393	7153817	18	64929										
DSG3	0	genome.wustl.edu	37	chr18	29055684	29055684	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgatctatgataatgaaggcGcagatgccactggttctcct	10	9	2	4			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	18	29055684	29055684	G	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	missense	c.2461	p.A821S	0.000	pfam_Cadherin_cytoplasmic-dom,prints_Desmoglein	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	91	0	0	73	41	35.96	-	-	-	T	29055684	G	T	29055684	3	4	734	1	0	0	0	0	1	0	0	0	4813	1087	38	3	2523	3	DSG3	18	29055684	Missense_Mutation	SNP	G	TCGA-D8-A27P-01A-11D-A16D-09		29055684	49021564	19	64930										
NETO1	0	genome.wustl.edu	37	chr18	70526127	70526127	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tccatcagcaaaaaatttaaTccatagaaatcttccactgg	4	10	2	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	18	70526127	70526127	T	C	SNP	NETO1	ENST00000327305	human	ensembl	69_37n	-1	known	missense	c.403	p.I135V	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	58	0	0	55	15	21.43	-	-	-	C	70526127	T	C	70526127	3	2	734	1	0	0	0	0	1	0	0	0	10411	1435	50	5	1235	5	NETO1	18	70526127	Missense_Mutation	SNP	T	TCGA-D8-A27P-01A-11D-A16D-09	41470443	70526127	7551121	20	64931										
R3HDML	0	genome.wustl.edu	37	chr20	42965927	42965927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agagcacggctatgcggctcCtgagtggcctggaggtgccc	16	12	0	2			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	20	42965927	42965927	C	T	SNP	R3HDML	ENST00000217043	human	ensembl	69_37n	1	known	silent	c.130	p.L44	0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074	22	0	0	12	4	25	-	-	-	T	42965927	C	T	42965927	2	4	734	1	0	0	0	0	0	0	0	1	12972	680	24	4		4	R3HDML	20	42965927	Silent	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09		42965927	20059593	21	64932										
ALG12	0	genome.wustl.edu	37	chr22	50304162	50304162	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcatggccgtcacccagcagAacatggtggccaccatggcc	12	15	1	1			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	22	50304162	50304162	A	T	SNP	ALG12	ENST00000330817	human	ensembl	69_37n	-1	known	missense	c.389	p.F130Y	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858	28	0	0	22	7	24.14	-	-	-	T	50304162	A	T	50304162	3	4	734	1	0	0	0	0	1	0	0	0	514	246	9	5	1105	5	ALG12	22	50304162	Missense_Mutation	SNP	A	TCGA-D8-A27P-01A-11D-A16D-09		50304162	1000404	22	64933										
UBA1	0	genome.wustl.edu	37	chrX	47073947	47073947	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctctccagacagagcacaaAttagagatcaccatgctgtc	7	13	2	3			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	X	47073947	47073947	A	G	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.2952	p.K984	1.000	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	86	0	0	40	16	28.57	-	-	-	G	47073947	A	G	47073947	2	3	734	1	0	0	0	0	0	0	0	1	16924	98	4	5		5	UBA1	23	47073947	Silent	SNP	A	TCGA-D8-A27P-01A-11D-A16D-09		47073947	108196613	23	64934										
HUWE1	0	genome.wustl.edu	37	chrX	53561598	53561598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagtgaagatggaaatgaggCgctttggaatgatctcatag	13	5	1	4			TCGA-D8-A27P-01A-11D-A16D-09	TCGA-D8-A27P-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	94011b46-74e3-41c1-a3f6-6db1821d1778	8278fd29-aaf7-4be5-a235-84073f745cad	X	53561598	53561598	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12710	p.R4237H	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	77	0	0	48	12	20	-	-	-	T	53561598	C	T	53561598	3	4	734	1	0	0	0	0	1	0	0	0	7515	768	27	1	426	1	HUWE1	23	53561598	Missense_Mutation	SNP	C	TCGA-D8-A27P-01A-11D-A16D-09	6487651	53561598	101708962	24	64935										
ARID1A	0	genome.wustl.edu	37	chr1	27099042	27099042	+	Frame_Shift_Del	DEL	C	C	-													0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tccccagtcaaccagcagttCcatggcagaaggaggagact							TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	27099042	27099042	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_del	c.3458	p.M1154fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	87	0	0	56	18	24	-	-	-	-	27099042	C	-	27099042	7	5	735	1	0	1	0	1	0	0	0	0	915	855	30	0	3508	0	ARID1A	1	27099042	Frame_Shift_Del	DEL	C	TCGA-D8-A27R-01A-11D-A16D-09		27099042	222151579	1	64936										
SPATA1	0	genome.wustl.edu	37	chr1	85018771	85018772	+	RNA	INS	-	-	A													0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tgaaaactgaactggcacagINSaaaaaaaaaataatacatct							TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	85018771	85018772	-	A	INS	SPATA1	ENST00000460286	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	13	0	0	17	3	15	-	-	-	A	85018772	-	A	85018771	6	5	735	0	1	1	1	0	0	0	0	0	15089	933	33	0		0	SPATA1	1	85018771	RNA	INS	-	TCGA-D8-A27R-01A-11D-A16D-09	57919729	85018771	164231850	2	64937										
SLC45A3	0	genome.wustl.edu	37	chr1	205632534	205632534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	acagaagtccagcagccccaCgcccaggatgagcagtgcca	11	15	0	2			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	205632534	205632534	C	A	SNP	SLC45A3	ENST00000367145	human	ensembl	69_37n	-1	known	missense	c.385	p.V129L	0.980	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715	8	0	0	1	5	83.33	-	-	-	A	205632534	C	A	205632534	3	1	735	1	0	0	0	0	1	0	0	0	14731	536	19	3	1288	3	SLC45A3	1	205632534	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09	120613763	205632534	43618087	3	64938										
EPRS	0	genome.wustl.edu	37	chr1	220170582	220170582	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ttttaattcacgaaccacatCtccttgaacagccactctat	3	13	3	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	220170582	220170582	C	T	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.2284	p.D762N	0.999	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	59	0	0	84	15	15.15	-	-	-	T	220170582	C	T	220170582	3	4	735	1	0	0	0	0	1	0	0	0	5228	913	32	2	2314	2	EPRS	1	220170582	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09	14538048	220170582	29080039	4	64939										
RGPD4	0	genome.wustl.edu	37	chr2	108487890	108487890	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tctctgatggtgatgccaaaCtagagcggttagcagcaaaa	11	8	1	3			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	2	108487890	108487890	C	G	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.3430	p.L1144V	0.988	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	46	0	0	19	10	34.48	-	-	-	G	108487890	C	G	108487890	3	3	735	1	0	0	0	0	1	0	0	0	13371	564	20	4	3508	4	RGPD4	2	108487890	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		108487890	134711483	5	64940										
INPP1	0	genome.wustl.edu	37	chr2	191236038	191236038	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	gatcggtgggccaacaagggAggactcattgcatacagatc	13	9	1	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	2	191236038	191236038	A	G	SNP	INPP1	ENST00000322522	human	ensembl	69_37n	1	known	silent	c.1110	p.G370	0.935	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	INPP1	HGNC	ENSG00000151689	41	0	0	36	7	16.28	-	-	-	G	191236038	A	G	191236038	2	3	735	1	0	0	0	0	0	0	0	1	7805	291	11	5		5	INPP1	2	191236038	Silent	SNP	A	TCGA-D8-A27R-01A-11D-A16D-09	82748148	191236038	51963335	6	64941										
KIAA1109	0	genome.wustl.edu	37	chr4	123254965	123254965	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ttcccggagttgatgtaaagGtaaaaacccaattgcctagg	10	8	0	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	4	123254965	123254965	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	splice_site	c.11646+1	e66+1	1.000	-	-	-	no_errors	KIAA1109	HGNC	ENSG00000138688	56	0	0	37	19	33.93	-	-	-	T	123254965	G	T	123254965	5	4	735	1	0	0	0	0	0	0	1	0	8260	1275	44	4	11909	4	KIAA1109	4	123254965	Splice_Site	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		123254965	67899311	7	64942										
TLL1	0	genome.wustl.edu	37	chr4	166999053	166999053	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	gatattatggttattggtgcAgctgagtgtgaacagaagat	13	3	0	4			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	4	166999053	166999053	A	T	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	splice_site	c.2315-2	e18-2	1.000	-	-	-	no_errors	TLL1	HGNC	ENSG00000038295	36	0	0	33	8	19.51	-	-	-	T	166999053	A	T	166999053	5	4	735	1	0	0	0	0	0	0	1	0	16040	202	7	5	2383	5	TLL1	4	166999053	Splice_Site	SNP	A	TCGA-D8-A27R-01A-11D-A16D-09	43744088	166999053	24155223	8	64943										
CARD6	0	genome.wustl.edu	37	chr5	40853931	40853931	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tacaggcctgccctgagagaCcacaaatgatgggaactctt	10	11	1	3			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	5	40853931	40853931	C	A	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	missense	c.2497	p.P833T	0.000	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	48	0	0	28	6	17.65	-	-	-	A	40853931	C	A	40853931	3	1	735	1	0	0	0	0	1	0	0	0	2675	507	18	4	2507	4	CARD6	5	40853931	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		40853931	140061329	9	64944										
PCDHAC2	0	genome.wustl.edu	37	chr5	140348477	140348477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tgaaattaccctttatctaaTaatagcattaagcacagtgt	5	7	1	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	5	140348477	140348477	T	C	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	missense	c.2126	p.I709T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	35	0	0	19	13	40.62	-	-	-	C	140348477	T	C	140348477	3	2	735	1	0	0	0	0	1	0	0	0	11606	1406	49	5	2128	5	PCDHAC2	5	140348477	Missense_Mutation	SNP	T	TCGA-D8-A27R-01A-11D-A16D-09	99494546	140348477	40566783	10	64945										
HTR1B	0	genome.wustl.edu	37	chr6	78172317	78172317	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ggaacccgcgagttaatagaGgtgaccgaggacgtggaccc	15	10	0	2			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	6	78172317	78172317	G	C	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	silent	c.804	p.T268	0.994	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1B_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	39	0	0	26	9	25.71	-	-	-	C	78172317	G	C	78172317	2	2	735	1	0	0	0	0	0	0	0	1	7491	987	35	4		4	HTR1B	6	78172317	Silent	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		78172317	92942750	11	64946										
AKAP9	0	genome.wustl.edu	37	chr7	91641818	91641818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	caactcatgtggatcaggttCgtgaatatatggaaaatgaa	10	5	2	2			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	7	91641818	91641818	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.3430	p.R1144C	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	68	0	0	49	10	16.95	-	-	-	T	91641818	C	T	91641818	3	4	735	1	0	0	0	0	1	0	0	0	459	884	31	1	3428	1	AKAP9	7	91641818	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		91641818	67496845	12	64947										
LARP4B	0	genome.wustl.edu	37	chr10	882385	882385	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	atttcacgcaatattactatGcagcgattttgatttggcct	7	8	1	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	10	882385	882385	G	T	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	nonsense	c.708	p.C236*	1.000	pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	164	0	0	130	51	28.18	-	-	-	T	882385	G	T	882385	4	4	735	1	0	0	0	0	0	1	0	0	8685	1311	46	4	1552	4	LARP4B	10	882385	Nonsense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		882385	134652362	13	64948										
FAM13C	0	genome.wustl.edu	37	chr10	61028447	61028447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	gctgcagcgtgaagaactccGcggcctgcagtgattacaag	13	11	0	3			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	10	61028447	61028447	G	A	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.808	p.R270W	0.998	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	72	0	0	59	8	11.94	-	-	-	A	61028447	G	A	61028447	3	1	735	1	0	0	0	0	1	0	0	0	5494	1086	38	1	977	1	FAM13C	10	61028447	Missense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09	60146062	61028447	74506300	14	64949										
PLCB3	0	genome.wustl.edu	37	chr11	64030194	64030194	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	acatgtttggcctccctgttGatacgcggcgcaagtaccgc	11	13	0	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	11	64030194	64030194	G	A	SNP	PLCB3	ENST00000279230	human	ensembl	69_37n	1	known	missense	c.2269	p.D757N	1.000	pirsf_PLC-beta,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCB3	HGNC	ENSG00000149782	27	0	0	26	8	23.53	-	-	-	A	64030194	G	A	64030194	3	1	735	1	0	0	0	0	1	0	0	0	12103	1290	45	2	2343	2	PLCB3	11	64030194	Missense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		64030194	70976322	15	64950										
CLCF1	0	genome.wustl.edu	37	chr11	67132963	67132963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	cagaaggtggctgtaggcctCgtagttctgggtcagccgca	15	10	2	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	11	67132963	67132963	C	T	SNP	CLCF1	ENST00000312438	human	ensembl	69_37n	-1	known	missense	c.322	p.E108K	0.999	pfam_PRF,pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	pfam_PRF,pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	-	no_errors	CLCF1	HGNC	ENSG00000175505	43	0	0	35	7	16.67	-	-	-	T	67132963	C	T	67132963	3	4	735	1	0	0	0	0	1	0	0	0	3491	893	31	1	359	1	CLCF1	11	67132963	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09	3102769	67132963	67873553	16	64951										
FBXO33	0	genome.wustl.edu	37	chr14	39870722	39870722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ctcatcatttggcatgttgtCcagagacttgtgcattacag	9	9	2	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	14	39870722	39870722	C	T	SNP	FBXO33	ENST00000298097	human	ensembl	69_37n	-1	known	missense	c.1054	p.D352N	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO33	HGNC	ENSG00000165355	58	0	0	45	21	31.82	-	-	-	T	39870722	C	T	39870722	3	4	735	1	0	0	0	0	1	0	0	0	5789	855	30	2	621	2	FBXO33	14	39870722	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		39870722	67478818	17	64952										
GOLGA8A	0	genome.wustl.edu	37	chr15	34676192	34676192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tgtcctttcagcagtatctgCtcccgtatggactgctctaa	8	12	3	0			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	15	34676192	34676192	C	T	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	silent	c.714	p.E238	0.015	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	18	0	0	10	4	28.57	-	-	-	T	34676192	C	T	34676192	2	4	735	1	0	0	0	0	0	0	0	1	6613	796	28	4		4	GOLGA8A	15	34676192	Silent	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		34676192	67855200	18	64953										
TAOK1	0	genome.wustl.edu	37	chr17	27822641	27822641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	atctcattcagaggacaaagGatgcagtaagagagctggac	12	7	2	2			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	17	27822641	27822641	G	T	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	missense	c.895	p.D299Y	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	46	0	0	59	8	11.94	-	-	-	T	27822641	G	T	27822641	3	4	735	1	0	0	0	0	1	0	0	0	15639	1174	41	2	933	2	TAOK1	17	27822641	Missense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		27822641	53372569	19	64954										
MAPK4	0	genome.wustl.edu	37	chr18	48190626	48190626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	gtgagctgttcaagttcagcGtggcgtacatcgtccaggag	14	9	2	1			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	18	48190626	48190626	G	A	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	1	known	missense	c.298	p.V100M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	29	0	0	22	8	26.67	-	-	-	A	48190626	G	A	48190626	3	1	735	1	0	0	0	0	1	0	0	0	9351	1145	40	1	300	1	MAPK4	18	48190626	Missense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		48190626	29886622	20	64955										
AXL	0	genome.wustl.edu	37	chr19	41743948	41743948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ccgtgcccccccatcagcttCggctaggcagcctccatcct	8	20	1	0			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	19	41743948	41743948	C	T	SNP	AXL	ENST00000301178	human	ensembl	69_37n	1	known	missense	c.883	p.R295W	0.280	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	39	0	0	21	17	44.74	-	-	-	T	41743948	C	T	41743948	3	4	735	1	0	0	0	0	1	0	0	0	1242	875	31	1	909	1	AXL	19	41743948	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		41743948	17385035	21	64956										
MOV10L1	0	genome.wustl.edu	37	chr22	50563962	50563962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	atctgctggttctggaggtcCcagggttggccgaagggagg	18	8	2	0			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	22	50563962	50563962	C	T	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.1711	p.P571S	0.999	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	123	0	0	87	18	17.14	-	-	-	T	50563962	C	T	50563962	3	4	735	1	0	0	0	0	1	0	0	0	9791	623	22	4	1794	4	MOV10L1	22	50563962	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09		50563962	740604	22	64957										
MXRA5	0	genome.wustl.edu	37	chrX	3235330	3235330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	tcagctgcaccgtcctgcgcGcggagcctaccaggttggcg	14	15	1	0			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	X	3235330	3235330	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.6392	p.A2131V	0.978	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	19	0	0	4	7	63.64	-	-	-	A	3235330	G	A	3235330	3	1	735	1	0	0	0	0	1	0	0	0	10075	1087	38	1	2102	1	MXRA5	23	3235330	Missense_Mutation	SNP	G	TCGA-D8-A27R-01A-11D-A16D-09		3235330	152035230	23	64958										
PLXNB3	0	genome.wustl.edu	37	chrX	153043430	153043430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.871886716160037	1.10238095238095	0	1.28611111111111	0.333333333333333	0.930327025915261	0	ctgcggttctgggtgaatgcCttgaagaacccacagctcat	11	11	2	3			TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	X	153043430	153043430	C	T	SNP	PLXNB3	ENST00000448847	human	ensembl	69_37n	1	known	missense	c.200	p.P67L	0.868	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLXNB3	HGNC	ENSG00000198753	36	0	0	55	9	14.06	-	-	-	T	153043430	C	T	153043430	3	4	735	1	0	0	0	0	1	0	0	0	12199	668	24	4	5529	4	PLXNB3	23	153043430	Missense_Mutation	SNP	C	TCGA-D8-A27R-01A-11D-A16D-09	149808100	153043430	2227130	24	64959										
PADI3	0	genome.wustl.edu	37	chr1	17597589	17597589	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	aacaacacgtgttttgtggaTgcggtggcagagctggccag	15	8	0	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	1	17597589	17597589	T	C	SNP	PADI3	ENST00000375460	human	ensembl	69_37n	1	known	silent	c.963	p.D321	0.029	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	24	0	0	10	7	41.18	-	-	-	C	17597589	T	C	17597589	2	2	736	1	0	0	0	0	0	0	0	1	11452	1461	51	5		5	PADI3	1	17597589	Silent	SNP	T	TCGA-D8-A27T-01A-11D-A16D-09		17597589	231653032	1	64960										
GPR137B	0	genome.wustl.edu	37	chr1	236341813	236341813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	acgggaaattgggagaggaaGgttatcgtctctgtgcgagt	16	5	1	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	1	236341813	236341813	G	T	SNP	GPR137B	ENST00000366592	human	ensembl	69_37n	1	known	missense	c.564	p.K188N	0.064	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585	93	0	0	104	37	26.24	-	-	-	T	236341813	G	T	236341813	3	4	736	1	0	0	0	0	1	0	0	0	6696	991	35	4	574	4	GPR137B	1	236341813	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09	218744224	236341813	12908808	2	64961										
SCN2A	0	genome.wustl.edu	37	chr2	166223736	166223736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	acatattttagactgtgtacGgaagttcaagtgttgtcaga	10	5	2	2			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	2	166223736	166223736	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.3530	p.R1177Q	0.996	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	95	0	0	54	22	28.95	-	-	-	A	166223736	G	A	166223736	3	1	736	1	0	0	0	0	1	0	0	0	14004	1116	39	1	3696	1	SCN2A	2	166223736	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		166223736	76975637	3	64962										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	81	0	0	71	24	25.26	-	-	-	A	178936091	G	A	178936091	3	1	736	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		178936091	19086339	4	64963										
MFI2	0	genome.wustl.edu	37	chr3	196754653	196754653	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	gagctggacgcagtggtcggCggaggtgccccggacgcaga	19	11	0	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	3	196754653	196754653	C	G	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.178	p.A60P	0.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	18	0	0	3	8	66.67	-	-	-	G	196754653	C	G	196754653	3	3	736	1	0	0	0	0	1	0	0	0	9593	768	27	3	2299	3	MFI2	3	196754653	Missense_Mutation	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09	17818562	196754653	1267777	5	64964										
KLHL5	0	genome.wustl.edu	37	chr4	39114838	39114838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	aacttgacttccagactctcAgactgtgtggaaaggtaatt	9	8	1	3			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	4	39114838	39114838	A	G	SNP	KLHL5	ENST00000515612	human	ensembl	69_37n	1	known	missense	c.559	p.R187G	0.993	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KLHL5	HGNC	ENSG00000109790	38	0	0	19	4	17.39	-	-	-	G	39114838	A	G	39114838	3	3	736	1	0	0	0	0	1	0	0	0	8445	175	7	5	2059	5	KLHL5	4	39114838	Missense_Mutation	SNP	A	TCGA-D8-A27T-01A-11D-A16D-09		39114838	152039438	6	64965										
SLC44A4	0	genome.wustl.edu	37	chr6	31832672	31832674	+	In_Frame_Del	DEL	AAG	AAG	-													0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ggatgcgaccggagaaaaaaAagaaggacaggacccctgtg							TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	6	31832672	31832674	AAG	-	DEL	SLC44A4	ENST00000229729	human	ensembl	69_37n	-1	known	in_frame_del	c.1847_1845	p.F618in_frame_del	1.000:1.000:1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385	38	0	0	17	12	40	-	-	-	-	31832674	AAG	-	31832672	7	5	736	1	0	1	0	1	0	0	0	0	14727	14	1	0	297	0	SLC44A4	6	31832672	In_Frame_Del	DEL	AAG	TCGA-D8-A27T-01A-11D-A16D-09		31832672	139282395	7	64966										
GUSB	0	genome.wustl.edu	37	chr7	65445321	65445321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ttcgtaccacacccagccgaCaaaatgccgcagacgccagt	8	16	0	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	65445321	65445321	C	T	SNP	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	missense	c.286	p.V96I	0.880	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	25	0	0	20	8	28.57	-	-	-	T	65445321	C	T	65445321	3	4	736	1	0	0	0	0	1	0	0	0	6953	478	17	4	1713	4	GUSB	7	65445321	Missense_Mutation	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09		65445321	93693342	8	64967										
GAL3ST4	0	genome.wustl.edu	37	chr7	99757738	99757738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ctgacccaaactggaaggggCggaaccggcgatcagtgatg	15	10	1	2			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	99757738	99757738	C	T	SNP	GAL3ST4	ENST00000360039	human	ensembl	69_37n	-1	known	missense	c.1274	p.R425H	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093	27	0	0	21	8	27.59	-	-	-	T	99757738	C	T	99757738	3	4	736	1	0	0	0	0	1	0	0	0	6250	768	27	1	190	1	GAL3ST4	7	99757738	Missense_Mutation	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09	34312417	99757738	59380925	9	64968										
PTPRN2	0	genome.wustl.edu	37	chr7	157959701	157959701	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ggcggctggtgccagcaaagGcctgggcattcttgagggtg	18	9	1	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	157959701	157959701	G	T	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	missense	c.901	p.P301T	0.137	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	19	0	0	8	5	38.46	-	-	-	T	157959701	G	T	157959701	3	4	736	1	0	0	0	0	1	0	0	0	12891	1203	42	4	2287	4	PTPRN2	7	157959701	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09	58201963	157959701	1178962	10	64969										
EHMT1	0	genome.wustl.edu	37	chr9	140707938	140707938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	agtacgtctctcagaactgcGtgacgtcccccatgaacatc	8	14	2	3			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	9	140707938	140707938	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.3136	p.V1046M	1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	29	0	0	6	6	50	-	-	-	A	140707938	G	A	140707938	3	1	736	1	0	0	0	0	1	0	0	0	5018	1145	40	1	3267	1	EHMT1	9	140707938	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		140707938	505493	11	64970										
RIN1	0	genome.wustl.edu	37	chr11	66102467	66102467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ggactgcccctggcagcacgGggacggggggaggtggcacg	21	11	0	0			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	11	66102467	66102467	G	C	SNP	RIN1	ENST00000311320	human	ensembl	69_37n	-1	known	missense	c.803	p.P268R	0.967	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791	27	0	0	16	7	30.43	-	-	-	C	66102467	G	C	66102467	3	2	736	1	0	0	0	0	1	0	0	0	13457	1232	43	4	1568	4	RIN1	11	66102467	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		66102467	68904049	12	64971										
PITPNM1	0	genome.wustl.edu	37	chr11	67260513	67260513	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	tctttgggagacccataaccGgccacgatgttcagttctac	9	12	3	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	11	67260513	67260513	G	A	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	silent	c.3363	p.A1121	0.740	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	28	0	0	29	9	23.68	-	-	-	A	67260513	G	A	67260513	2	1	736	1	0	0	0	0	0	0	0	1	12024	1103	39	1		1	PITPNM1	11	67260513	Silent	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09	1158046	67260513	67746003	13	64972										
PCDH9	0	genome.wustl.edu	37	chr13	67802512	67802512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	aataagttcttgagctattgCggaatccagccttaaacagg	9	8	1	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	13	67802512	67802512	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.61	p.A21T	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	68	0	0	47	6	11.32	-	-	-	T	67802512	C	T	67802512	3	4	736	1	0	0	0	0	1	0	0	0	11591	768	27	1	3668	1	PCDH9	13	67802512	Missense_Mutation	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09		67802512	47367366	14	64973										
GNPNAT1	0	genome.wustl.edu	37	chr14	53247396	53247396	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	accttgtttctgcctacttaCaatttgccaagctgctttcc	5	13	1	0			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	14	53247396	53247396	C	A	SNP	GNPNAT1	ENST00000216410	human	ensembl	69_37n	-1	known	splice_site	c.407+1	e4+1	1.000	-	-	-	no_errors	GNPNAT1	HGNC	ENSG00000100522	129	0	0	93	33	26.19	-	-	-	A	53247396	C	A	53247396	5	1	736	1	0	0	0	0	0	0	1	0	6596	492	17	4	154	4	GNPNAT1	14	53247396	Splice_Site	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09		53247396	54102144	15	64974										
EIF2AK4	0	genome.wustl.edu	37	chr15	40295488	40295488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ttcatggaccacagcgggatGctggtgatgcttccttttga	12	9	1	2			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	15	40295488	40295488	G	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.3330	p.M1110I	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	59	0	0	59	7	10.61	-	-	-	T	40295488	G	T	40295488	3	4	736	1	0	0	0	0	1	0	0	0	5034	1319	46	4	3420	4	EIF2AK4	15	40295488	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		40295488	62235904	16	64975										
ADAMTS7	0	genome.wustl.edu	37	chr15	79059020	79059021	+	Frame_Shift_Ins	INS	-	-	A													0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	gggctcctcagagggcccgtINSaggacagatcctcgtggaaa							TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	15	79059020	79059021	-	A	INS	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3233_3232	p.Y1078fs	0.032:0.024	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	19	0	0	15	3	16.67	-	-	-	A	79059021	-	A	79059020	7	5	736	1	0	1	1	0	0	0	0	0	271	1638	57	0	1851	0	ADAMTS7	15	79059020	Frame_Shift_Ins	INS	-	TCGA-D8-A27T-01A-11D-A16D-09	38763532	79059020	23472372	17	64976										
CDH1	0	genome.wustl.edu	37	chr16	68846166	68846166	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	ccgatcttcaatcccaccacGgtaattctataactccttag	4	14	3	0			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	16	68846166	68846166	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	silent	c.1137	p.T379	0.582	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	52	0	0	14	16	51.61	-	-	-	A	68846166	G	A	68846166	2	1	736	1	0	0	0	0	0	0	0	1	3124	1130	39	1		1	CDH1	16	68846166	Silent	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		68846166	21508587	18	64977										
TMPRSS15	0	genome.wustl.edu	37	chr21	19770556	19770556	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	caagaactttgaaatccactGagagtttgtcttgcaaatta	7	7	1	3			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	21	19770556	19770556	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.236	p.S79L	0.991	pfam_SEA,smart_SEA,pfscan_SEA	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	108	0	0	41	20	32.79	-	-	-	A	19770556	G	A	19770556	3	1	736	1	0	0	0	0	1	0	0	0	16341	1294	45	2	2919	2	TMPRSS15	21	19770556	Missense_Mutation	SNP	G	TCGA-D8-A27T-01A-11D-A16D-09		19770556	28359339	19	64978										
TIMP3	0	genome.wustl.edu	37	chr22	33255330	33255330	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	gtaccgaggatgggccccccCggataaaagcatcatcaatg	11	12	2	0			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	22	33255330	33255330	C	A	SNP	TIMP3	ENST00000266085	human	ensembl	69_37n	1	known	missense	c.602	p.P201Q	1.000	NULL	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234	20	0	0	4	9	69.23	-	-	-	A	33255330	C	A	33255330	3	1	736	1	0	0	0	0	1	0	0	0	16014	652	23	3	620	3	TIMP3	22	33255330	Missense_Mutation	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09		33255330	18049236	20	64979										
PGK1	0	genome.wustl.edu	37	chrX	77378415	77378415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	tattggtggtggaatggcttTtaccttccttaaggtgctca	11	7	1	0			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	X	77378415	77378415	T	C	SNP	PGK1	ENST00000373316	human	ensembl	69_37n	1	known	missense	c.725	p.F242S	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144	96	0	0	51	31	37.8	-	-	-	C	77378415	T	C	77378415	3	2	736	1	0	0	0	0	1	0	0	0	11864	1841	64	5	751	5	PGK1	23	77378415	Missense_Mutation	SNP	T	TCGA-D8-A27T-01A-11D-A16D-09		77378415	77892145	21	64980										
ARMCX5	0	genome.wustl.edu	37	chrX	101858272	101858272	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	3	0.479717513739179	1.98584905660377	0	2.38301886792453	0.1	0.5224358974359	0	caagtttgtaaaggcataatCtcttgccccttgaactcccc	6	13	1	1			TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	X	101858272	101858272	C	T	SNP	ARMCX5	ENST00000246174	human	ensembl	69_37n	1	known	silent	c.1203	p.I401	0.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	33	0	0	28	15	34.88	-	-	-	T	101858272	C	T	101858272	2	4	736	1	0	0	0	0	0	0	0	1	966	903	32	2		2	ARMCX5	23	101858272	Silent	SNP	C	TCGA-D8-A27T-01A-11D-A16D-09	24479857	101858272	53412288	22	64981										
C1orf159	0	genome.wustl.edu	37	chr1	1018321	1018321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gggaaggcagcgggatccgtGgccctgtccaggggccgctc	18	13	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	1018321	1018321	G	A	SNP	C1orf159	ENST00000434641	human	ensembl	69_37n	-1	putative	missense	c.646	p.H216Y	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	C1orf159	HGNC	ENSG00000131591	16	0	0	18	10	34.48	-	-	-	A	1018321	G	A	1018321	3	1	737	1	0	0	0	0	1	0	0	0	2027	1335	47	4	51	4	C1orf159	1	1018321	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		1018321	248232300	1	64982										
MTHFR	0	genome.wustl.edu	37	chr1	11863157	11863157	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggttgaggctgctgtttcctCtggcttcgttcaccatggct	12	11	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	11863157	11863157	C	G	SNP	MTHFR	ENST00000376583	human	ensembl	69_37n	-1	known	missense	c.140	p.R47T	0.008	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000	33	0	0	83	15	15.15	-	-	-	G	11863157	C	G	11863157	3	3	737	1	0	0	0	0	1	0	0	0	10003	913	32	2	1997	2	MTHFR	1	11863157	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10844836	11863157	237387464	2	64983										
PRDM2	0	genome.wustl.edu	37	chr1	14108569	14108569	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atgcattgaagaaaaaaaatCagctagtacagaaagcaatt	7	5	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	14108569	14108569	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	nonsense	c.4279	p.Q1427*	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	27	0	0	36	10	21.74	-	-	-	T	14108569	C	T	14108569	4	4	737	1	0	0	0	0	0	1	0	0	12539	827	29	2	4305	2	PRDM2	1	14108569	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2245412	14108569	235142052	3	64984										
MFAP2	0	genome.wustl.edu	37	chr1	17301448	17301448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagctcctggcacaggaggcCgccacggattggcacaggcc	14	15	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	17301448	17301448	C	T	SNP	MFAP2	ENST00000375535	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.520	pfam_ShK_toxin	pfam_MAGP,pfam_ShK_toxin	-	no_errors	MFAP2	HGNC	ENSG00000117122	8	0	0	9	7	43.75	-	-	-	T	17301448	C	T	17301448	2	4	737	1	0	0	0	0	0	0	0	1	9585	639	23	1		1	MFAP2	1	17301448	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3192879	17301448	231949173	4	64985										
ACTL8	0	genome.wustl.edu	37	chr1	18152983	18152983	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ccagtctgagtggatgtcccGagaggagtatggtgagcata	15	7	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	18152983	18152983	G	C	SNP	ACTL8	ENST00000375406	human	ensembl	69_37n	1	known	missense	c.1070	p.R357P	0.162	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL8	HGNC	ENSG00000117148	48	0	0	63	17	21.25	-	-	-	C	18152983	G	C	18152983	3	2	737	1	0	0	0	0	1	0	0	0	202	1058	37	3	1076	3	ACTL8	1	18152983	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	851535	18152983	231097638	5	64986										
EIF4G3	0	genome.wustl.edu	37	chr1	21143962	21143962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gagtcgcttatacagctcttCggcagacagttctttctttg	9	10	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	21143962	21143962	C	T	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	missense	c.4288	p.E1430K	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	72	0	0	71	33	31.73	-	-	-	T	21143962	C	T	21143962	3	4	737	1	0	0	0	0	1	0	0	0	5075	893	31	1	503	1	EIF4G3	1	21143962	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2990979	21143962	228106659	6	64987										
PTPRU	0	genome.wustl.edu	37	chr1	29644307	29644307	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gacgtggaggagtgcagcatCgccctgttgccccggaaccg	15	13	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	29644307	29644307	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	silent	c.3591	p.I1197	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	18	0	0	42	13	23.64	-	-	-	T	29644307	C	T	29644307	2	4	737	1	0	0	0	0	0	0	0	1	12896	874	31	1		1	PTPRU	1	29644307	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	8500345	29644307	219606314	7	64988										
MEAF6	0	genome.wustl.edu	37	chr1	37975075	37975075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagctgctgaggtaaccgagGatttactgaagagccgctca	12	10	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	37975075	37975075	G	A	SNP	MEAF6	ENST00000373075	human	ensembl	69_37n	-1	known	missense	c.275	p.S92F	1.000	pfam_Hist_AcTrfase_NuA4_cplx	pfam_Hist_AcTrfase_NuA4_cplx	-	no_errors	MEAF6	HGNC	ENSG00000163875	72	0	0	84	24	22.22	-	-	-	A	37975075	G	A	37975075	3	1	737	1	0	0	0	0	1	0	0	0	9492	1174	41	2	354	2	MEAF6	1	37975075	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	8330768	37975075	211275546	8	64989										
MYCBP	0	genome.wustl.edu	37	chr1	39338782	39338782	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cctgaagagacaccgggggtCagtggccagagcccgggagc	17	12	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	39338782	39338782	C	T	SNP	MYCBP	ENST00000495043	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MYCBP	HGNC	ENSG00000214114	22	0	0	25	9	26.47	-	-	-	T	39338782	C	T	39338782	1	4	737	0	1	0	0	0	0	0	0	0	10089	841	29	2		2	MYCBP	1	39338782	RNA	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1363707	39338782	209911839	9	64990										
JAK1	0	genome.wustl.edu	37	chr1	65335085	65335085	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	catccctagacactcgttctCaatatcatgtccatcctgct	4	15	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	65335085	65335085	C	G	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.556	p.E186Q	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	61	0	0	94	40	29.85	-	-	-	G	65335085	C	G	65335085	3	3	737	1	0	0	0	0	1	0	0	0	7991	835	29	2	2988	2	JAK1	1	65335085	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	25996303	65335085	183915536	10	64991										
GCLM	0	genome.wustl.edu	37	chr1	94362251	94362251	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggcaacaatctttttgctctGaactaagttttctaattcct	5	9	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	94362251	94362251	G	A	SNP	GCLM	ENST00000370238	human	ensembl	69_37n	-1	known	nonsense	c.463	p.Q155*	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	GCLM	HGNC	ENSG00000023909	53	0	0	85	31	26.72	-	-	-	A	94362251	G	A	94362251	4	1	737	1	0	0	0	0	0	1	0	0	6346	1299	45	2	373	2	GCLM	1	94362251	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	29027166	94362251	154888370	11	64992										
AMPD1	0	genome.wustl.edu	37	chr1	115226879	115226879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caatgttccgcaagtatttgGaaggggttttagggaacctc	12	7	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	115226879	115226879	G	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.587	p.S196F	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	92	0	0	51	24	32	-	-	-	A	115226879	G	A	115226879	3	1	737	1	0	0	0	0	1	0	0	0	585	1174	41	2	1803	2	AMPD1	1	115226879	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	20864628	115226879	134023742	12	64993										
PDE4DIP	0	genome.wustl.edu	37	chr1	144903091	144903091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ccccacctccaatggcggccAgggtctccagcctgtttaag	10	16	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	144903091	144903091	A	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.2801	p.L934P	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	28	0	0	114	19	14.07	-	-	-	G	144903091	A	G	144903091	3	3	737	1	0	0	0	0	1	0	0	0	11716	188	7	5	4345	5	PDE4DIP	1	144903091	Missense_Mutation	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09	29676212	144903091	104347530	13	64994										
PDE4DIP	0	genome.wustl.edu	37	chr1	145039866	145039866	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctcagtaggaggctggactcAgagcggcgcggcgcccgggg	19	12	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	145039866	145039866	A	G	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	8	0	0	20	6	23.08	-	-	-	G	145039866	A	G	145039866	1	3	737	0	1	0	0	0	0	0	0	0	11716	203	7	5		5	PDE4DIP	1	145039866	RNA	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09	136775	145039866	104210755	14	64995										
ANKRD34A	0	genome.wustl.edu	37	chr1	145473931	145473931	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggagggcgtgggatgttatcCcctcgcgcccaggaagaaga	16	10	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	145473931	145473931	C	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	1	known	silent	c.603	p.S201	0.961	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	28	0	0	45	5	10	-	-	-	T	145473931	C	T	145473931	2	4	737	1	0	0	0	0	0	0	0	1	661	610	22	4		4	ANKRD34A	1	145473931	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	434065	145473931	103776690	15	64996										
PIAS3	0	genome.wustl.edu	37	chr1	145580380	145580380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgagggtgaaggggaaccatCcagtgtcctgggttggggaa	18	6	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	145580380	145580380	C	T	SNP	PIAS3	ENST00000369299	human	ensembl	69_37n	1	known	missense	c.835	p.P279S	0.000	NULL	smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	PIAS3	HGNC	ENSG00000131788	61	0	0	143	31	17.82	-	-	-	T	145580380	C	T	145580380	3	4	737	1	0	0	0	0	1	0	0	0	11951	870	30	2		2	PIAS3	1	145580380	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	106449	145580380	103670241	16	64997										
APH1A	0	genome.wustl.edu	37	chr1	150240054	150240054	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttagaacatgtggatatttaGagacttccctagaggagggg	13	5	0	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	150240054	150240054	G	A	SNP	APH1A	ENST00000486720	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	APH1A	HGNC	ENSG00000117362	14	0	0	36	7	16.28	-	-	-	A	150240054	G	A	150240054	1	1	737	0	1	0	0	0	0	0	0	0	772	957	33	2		2	APH1A	1	150240054	RNA	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	4659674	150240054	99010567	17	64998										
SSR2	0	genome.wustl.edu	37	chr1	155984806	155984806	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	attgttgccgaggtgaagttGaaataaccagccttgagagg	13	6	0	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	155984806	155984806	G	C	SNP	SSR2	ENST00000295702	human	ensembl	69_37n	-1	known	missense	c.309	p.F103L	1.000	pfam_TRAP_beta,pirsf_TRAP_beta	pfam_TRAP_beta,pirsf_TRAP_beta	-	no_errors	SSR2	HGNC	ENSG00000163479	80	0	0	170	22	11.46	-	-	-	C	155984806	G	C	155984806	3	2	737	1	0	0	0	0	1	0	0	0	15282	1281	45	2	254	2	SSR2	1	155984806	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	5744752	155984806	93265815	18	64999										
CCT3	0	genome.wustl.edu	37	chr1	156305630	156305630	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttgtgaccttggcagcattGatgtttccagattgaacttt	9	7	0	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	156305630	156305630	G	A	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	silent	c.81	p.I27	1.000	superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	88	0	0	209	27	11.44	-	-	-	A	156305630	G	A	156305630	2	1	737	1	0	0	0	0	0	0	0	1	2983	1280	45	2		2	CCT3	1	156305630	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	320824	156305630	92944991	19	65000										
APOA1BP	0	genome.wustl.edu	37	chr1	156563832	156563832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agaagaagtaccagctgaacCtgccaccctaccctgacacc	7	16	0	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	156563832	156563832	C	T	SNP	APOA1BP	ENST00000368234	human	ensembl	69_37n	1	known	missense	c.767	p.P256L	1.000	NULL	pfam_YjeF_N,superfamily_YjeF_N	-	no_errors	APOA1BP	HGNC	ENSG00000163382	26	0	0	35	10	22.22	-	-	-	T	156563832	C	T	156563832	3	4	737	1	0	0	0	0	1	0	0	0	783	680	24	4	845	4	APOA1BP	1	156563832	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	258202	156563832	92686789	20	65001										
ETV3L	0	genome.wustl.edu	37	chr1	157069072	157069072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggcgatgacatggcggaactCttccttctgcagcagctcca	11	13	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	157069072	157069072	C	T	SNP	ETV3L	ENST00000454449	human	ensembl	69_37n	-1	known	missense	c.157	p.E53K	1.000	pfam_Ets,smart_Ets,pfscan_Ets	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ETV3L	HGNC	ENSG00000253831	32	0	0	151	22	12.64	-	-	-	T	157069072	C	T	157069072	3	4	737	1	0	0	0	0	1	0	0	0	5317	922	32	2	944	2	ETV3L	1	157069072	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	505240	157069072	92181549	21	65002										
OR10J3	0	genome.wustl.edu	37	chr1	159284004	159284004	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgccaaggccaatccccagtGatccagaggccagttggata	11	12	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	159284004	159284004	G	A	SNP	OR10J3	ENST00000332217	human	ensembl	69_37n	-1	known	missense	c.446	p.S149L	0.560	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266	31	0	0	74	12	13.95	-	-	-	A	159284004	G	A	159284004	3	1	737	1	0	0	0	0	1	0	0	0	10984	1294	45	2	545	2	OR10J3	1	159284004	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	2214932	159284004	89966617	22	65003										
DCAF8	0	genome.wustl.edu	37	chr1	160195422	160195422	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cttgagtactccattgttctCattctcatcaattttcctct	3	12	4	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	160195422	160195422	C	G	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	missense	c.1564	p.E522Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	64	0	0	145	23	13.69	-	-	-	G	160195422	C	G	160195422	3	3	737	1	0	0	0	0	1	0	0	0	4308	835	29	2	719	2	DCAF8	1	160195422	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	911418	160195422	89055199	23	65004										
DCAF6	0	genome.wustl.edu	37	chr1	168034845	168034845	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tagataaaagaagccaatttCtggggtgctaactttgtaat	9	5	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	168034845	168034845	C	T	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	silent	c.2457	p.F819	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	65	0	0	141	35	19.89	-	-	-	T	168034845	C	T	168034845	2	4	737	1	0	0	0	0	0	0	0	1	4306	912	32	2		2	DCAF6	1	168034845	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	7839423	168034845	81215776	24	65005										
TNN	0	genome.wustl.edu	37	chr1	175086256	175086256	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agcactgtcctgacgggcctGaggccgggtgtggagtacac	16	11	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	175086256	175086256	G	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	silent	c.2301	p.L767	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	31	0	0	65	13	16.67	-	-	-	A	175086256	G	A	175086256	2	1	737	1	0	0	0	0	0	0	0	1	16418	1277	45	2		2	TNN	1	175086256	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	7051411	175086256	74164365	25	65006										
NCF2	0	genome.wustl.edu	37	chr1	183532637	183532637	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcccggacctggctgtagggGagcccgggctgagtcttcat	15	12	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	183532637	183532637	G	A	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	silent	c.1110	p.L370	0.943	pfam_OPR_PB1,smart_OPR_PB1	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	35	0	0	104	23	18.11	-	-	-	A	183532637	G	A	183532637	2	1	737	1	0	0	0	0	0	0	0	1	10289	1161	41	2		2	NCF2	1	183532637	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	8446381	183532637	65717984	26	65007										
PKP1	0	genome.wustl.edu	37	chr1	201282464	201282464	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agccgcagtgagcccgacctCtactgtgacccacggggcac	12	16	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	201282464	201282464	C	G	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	silent	c.477	p.L159	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	18	0	0	60	13	17.81	-	-	-	G	201282464	C	G	201282464	2	3	737	1	0	0	0	0	0	0	0	1	12058	900	32	2		2	PKP1	1	201282464	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	17749827	201282464	47968157	27	65008										
FCAMR	0	genome.wustl.edu	37	chr1	207134516	207134516	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gacgctgttccataggatctCatggtgagctccccagcagc	11	13	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	207134516	207134516	C	G	SNP	FCAMR	ENST00000324852	human	ensembl	69_37n	-1	novel	missense	c.705	p.M235I	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCAMR	HGNC	ENSG00000162897	38	0	0	113	32	22.07	-	-	-	G	207134516	C	G	207134516	3	3	737	1	0	0	0	0	1	0	0	0	5818	826	29	2	1040	2	FCAMR	1	207134516	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	5852052	207134516	42116105	28	65009										
KCNH1	0	genome.wustl.edu	37	chr1	210970868	210970868	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acctagaatggccaccacctCatcatcttggatcacctcca	5	16	4	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	210970868	210970868	C	G	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.1897	p.E633Q	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	39	0	0	65	11	14.47	-	-	-	G	210970868	C	G	210970868	3	3	737	1	0	0	0	0	1	0	0	0	8085	835	29	2	1084	2	KCNH1	1	210970868	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3836352	210970868	38279753	29	65010										
DTL	0	genome.wustl.edu	37	chr1	212241661	212241661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtacccaggtagcagcactcGaaaacttggtaagcctttaa	9	10	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	212241661	212241661	G	A	SNP	DTL	ENST00000366991	human	ensembl	69_37n	1	known	missense	c.809	p.R270Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476	53	0	0	63	19	23.17	-	-	-	A	212241661	G	A	212241661	3	1	737	1	0	0	0	0	1	0	0	0	4822	1058	37	1	843	1	DTL	1	212241661	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1270793	212241661	37008960	30	65011										
RYR2	0	genome.wustl.edu	37	chr1	237632412	237632412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cggctctaattagaggaaatCgtaaaaactgtgctcaattt	8	7	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	237632412	237632412	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1627	p.R543G	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	94	0	0	176	28	13.66	-	-	-	G	237632412	C	G	237632412	3	3	737	1	0	0	0	0	1	0	0	0	13855	884	31	3	1699	3	RYR2	1	237632412	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	25390751	237632412	11618209	31	65012										
KMO	0	genome.wustl.edu	37	chr1	241729857	241729857	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aaaaacttctaaccagtaatGatgtggtagatttcttccag	7	7	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	1	241729857	241729857	G	C	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.754	p.D252H	0.959	pfam_mOase_FAD-bd	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	76	0	0	126	21	14.29	-	-	-	C	241729857	G	C	241729857	3	2	737	1	0	0	0	0	1	0	0	0	8477	1290	45	2	788	2	KMO	1	241729857	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	4097445	241729857	7520764	32	65013										
ROCK2	0	genome.wustl.edu	37	chr2	11338705	11338705	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttcttcatctttcaatcttGacagttctgaaacatggaaa	5	8	6	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	11338705	11338705	G	C	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	nonsense	c.3011	p.S1004*	0.272	pfam_Rho-bd,pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	89	0	0	62	24	27.91	-	-	-	C	11338705	G	C	11338705	4	2	737	1	0	0	0	0	0	1	0	0	13604	1294	45	2	1191	2	ROCK2	2	11338705	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		11338705	231860668	33	65014										
SDC1	0	genome.wustl.edu	37	chr2	20402587	20402587	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gccccgccgttggcttgtttCggctcctccaaggagtagct	12	14	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	20402587	20402587	C	T	SNP	SDC1	ENST00000254351	human	ensembl	69_37n	-1	known	silent	c.873	p.P291	0.232	pfam_Syndecan,smart_Neurexin-like	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884	22	0	0	24	11	31.43	-	-	-	T	20402587	C	T	20402587	2	4	737	1	0	0	0	0	0	0	0	1	14039	871	31	1		1	SDC1	2	20402587	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	9063882	20402587	222796786	34	65015										
EIF2B4	0	genome.wustl.edu	37	chr2	27591285	27591285	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tctgctgtactggggtaggtGagagaagagactgactttgg	16	5	1	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	27591285	27591285	G	A	SNP	EIF2B4	ENST00000347454	human	ensembl	69_37n	-1	known	missense	c.544	p.H182Y	1.000	NULL	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211	75	0	0	67	20	22.99	-	-	-	A	27591285	G	A	27591285	3	1	737	1	0	0	0	0	1	0	0	0	5038	1290	45	2	1059	2	EIF2B4	2	27591285	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	7188698	27591285	215608088	35	65016										
PLB1	0	genome.wustl.edu	37	chr2	28865850	28865850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gccttgtggtgggcatcatcGggacagtggtctggaggtgc	18	8	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	28865850	28865850	G	A	SNP	PLB1	ENST00000422425	human	ensembl	69_37n	1	known	missense	c.4267	p.G1423R	0.000	NULL	pfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type	-	no_errors	PLB1	HGNC	ENSG00000163803	32	0	0	50	13	20.63	-	-	-	A	28865850	G	A	28865850	3	1	737	1	0	0	0	0	1	0	0	0	12098	1116	39	1	4563	1	PLB1	2	28865850	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1274565	28865850	214333523	36	65017										
GEMIN6	0	genome.wustl.edu	37	chr2	39008833	39008833	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agcccagaggatctggaagaGagaaagaacagcctaaagaa	12	7	1	5			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	39008833	39008833	G	A	SNP	GEMIN6	ENST00000281950	human	ensembl	69_37n	1	known	silent	c.303	p.E101	0.917	pfam_Gemin6	pfam_Gemin6	-	no_errors	GEMIN6	HGNC	ENSG00000152147	36	0	0	46	23	33.33	-	-	-	A	39008833	G	A	39008833	2	1	737	1	0	0	0	0	0	0	0	1	6384	933	33	2		2	GEMIN6	2	39008833	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	10142983	39008833	204190540	37	65018										
USP34	0	genome.wustl.edu	37	chr2	61492568	61492568	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gcctgtcttgcctcaggtatCatataaagttgctgaatagt	9	8	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	61492568	61492568	C	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.5742	p.M1914I	1.000	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	47	0	0	47	16	25.4	-	-	-	T	61492568	C	T	61492568	3	4	737	1	0	0	0	0	1	0	0	0	17162	826	29	2	5050	2	USP34	2	61492568	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	22483735	61492568	181706805	38	65019										
ANAPC1	0	genome.wustl.edu	37	chr2	112588876	112588876	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tacataccaagactacaagtCtgcttctttcacagattcca	4	12	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	112588876	112588876	C	T	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.2612	p.R871K	0.913	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	76	0	0	63	26	29.21	-	-	-	T	112588876	C	T	112588876	3	4	737	1	0	0	0	0	1	0	0	0	598	913	32	2	3334	2	ANAPC1	2	112588876	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	51096308	112588876	130610497	39	65020										
ZC3H6	0	genome.wustl.edu	37	chr2	113089859	113089859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cggacgttcccaggagttctGgtaaggttcaggtcccagca	13	11	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	113089859	113089859	G	A	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.3364	p.G1122S	0.001	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	20	0	0	29	9	23.68	-	-	-	A	113089859	G	A	113089859	3	1	737	1	0	0	0	0	1	0	0	0	17667	1348	47	4	3410	4	ZC3H6	2	113089859	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	500983	113089859	130109514	40	65021										
RGPD8	0	genome.wustl.edu	37	chr2	113157342	113157342	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cttcatattcaacaatttctGatgcctaaacacatagaata	3	9	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	113157342	113157342	G	C	SNP	RGPD8	ENST00000302558	human	ensembl	69_37n	-1	known	nonsense	c.1922	p.S641*	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD8	HGNC	ENSG00000169629	88	0	0	30	14	31.82	-	-	-	C	113157342	G	C	113157342	4	2	737	1	0	0	0	0	0	1	0	0	13374	1294	45	2	3415	2	RGPD8	2	113157342	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	67483	113157342	130042031	41	65022										
HS6ST1	0	genome.wustl.edu	37	chr2	129026227	129026227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggccagcatgcgcacctggcGgttgttggccaggttgtacg	16	11	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	129026227	129026227	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.745	p.R249S	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	13	0	0	29	11	27.5	-	-	-	T	129026227	G	T	129026227	3	4	737	1	0	0	0	0	1	0	0	0	7421	1116	39	3	494	3	HS6ST1	2	129026227	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	15868885	129026227	114173146	42	65023										
SMPD4	0	genome.wustl.edu	37	chr2	130911319	130911319	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagggccttctccaggtattCatctgtcttccggacactgt	9	13	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	130911319	130911319	C	T	SNP	SMPD4	ENST00000409031	human	ensembl	69_37n	-1	known	missense	c.1966	p.E656K	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699	51	0	0	96	27	21.95	-	-	-	T	130911319	C	T	130911319	3	4	737	1	0	0	0	0	1	0	0	0	14896	835	29	2	650	2	SMPD4	2	130911319	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1885092	130911319	112288054	43	65024										
LRP1B	0	genome.wustl.edu	37	chr2	141643815	141643815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgctattgtgtttctcaatcCaggaacaagtagactatagt	8	7	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	141643815	141643815	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.3856	p.G1286R	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	75	0	0	65	22	25.29	-	-	-	T	141643815	C	T	141643815	3	4	737	1	0	0	0	0	1	0	0	0	9021	603	21	4	10215	4	LRP1B	2	141643815	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10732496	141643815	101555558	44	65025										
SCN2A	0	genome.wustl.edu	37	chr2	166245374	166245374	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tccaattttgcctatgttaaGagggaagttgggatcgatga	12	5	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	166245374	166245374	G	C	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.5058	p.K1686N	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	118	0	0	102	50	32.89	-	-	-	C	166245374	G	C	166245374	3	2	737	1	0	0	0	0	1	0	0	0	14004	933	33	2	5256	2	SCN2A	2	166245374	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	24601559	166245374	76953999	45	65026										
SCN7A	0	genome.wustl.edu	37	chr2	167313382	167313382	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atagatagatatagatacctCatctgtttcatttccttctt	4	8	4	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	167313382	167313382	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	nonsense	c.1288	p.E430*	0.288	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	56	0	0	48	12	20	-	-	-	A	167313382	C	A	167313382	4	1	737	1	0	0	0	0	0	1	0	0	14011	835	29	2	3824	2	SCN7A	2	167313382	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1068008	167313382	75885991	46	65027										
XIRP2	0	genome.wustl.edu	37	chr2	168103371	168103371	+	Silent	SNP	G	G	A													0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gttaaggtttttatgaccgaGcctcagagtacatttggtaa							TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	168103371	168103371	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.5469	p.E1823	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	32	0	0	29	12	29.27	-	-	-	A	168103371	G	A	168103371	2	1	737	1	0	0	0	0	0	0	0	1	17527	962	34	4		4	XIRP2	2	168103371	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	789989	168103371	75096002	47	65028	473	2								
XIRP2	0	genome.wustl.edu	37	chr2	168103377	168103377	+	Silent	SNP	G	G	A													0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtttttatgaccgagcctcaGagtacatttggtaagatacc							TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	168103377	168103377	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.5475	p.Q1825	0.001	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	32	0	0	27	11	28.21	-	-	-	A	168103377	G	A	168103377	2	1	737	1	0	0	0	0	0	0	0	1	17527	933	33	2		2	XIRP2	2	168103377	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	6	168103377	75095996	48	65029	473	2								
TTN	0	genome.wustl.edu	37	chr2	179567268	179567268	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttctggctctctgtcagttCtgttggtcctttgtaccatg	9	10	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	179567268	179567268	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.26614	p.E8872K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	64	0	0	130	48	26.97	-	-	-	T	179567268	C	T	179567268	3	4	737	1	0	0	0	0	1	0	0	0	16832	922	32	2	74207	2	TTN	2	179567268	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	11463891	179567268	63632105	49	65030										
DOCK10	0	genome.wustl.edu	37	chr2	225659734	225659734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcggggtccttctcgtgctcCttcatctgagctgtggccat	11	13	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	225659734	225659734	C	T	SNP	DOCK10	ENST00000409802	human	ensembl	69_37n	-1	known	missense	c.1192	p.G398R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK10	HGNC	ENSG00000135905	72	0	0	110	51	31.68	-	-	-	T	225659734	C	T	225659734	3	4	737	1	0	0	0	0	1	0	0	0	4720	680	24	4	1592	4	DOCK10	2	225659734	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	46092466	225659734	17539639	50	65031										
AGAP1	0	genome.wustl.edu	37	chr2	236957722	236957722	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gatcccaactgggccagtttGaacttgggagccctcatgtg	12	11	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	2	236957722	236957722	G	C	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	missense	c.1911	p.L637F	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	86	0	0	125	28	18.3	-	-	-	C	236957722	G	C	236957722	3	2	737	1	0	0	0	0	1	0	0	0	366	1281	45	2	1973	2	AGAP1	2	236957722	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	11297988	236957722	6241651	51	65032										
RAD18	0	genome.wustl.edu	37	chr3	8923136	8923136	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acttatttctgtgtcttgaaGatcgtttctgaagacagaaa	8	6	3	5			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	8923136	8923136	G	T	SNP	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	missense	c.1393	p.L465I	0.007	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	115	0	0	115	60	34.29	-	-	-	T	8923136	G	T	8923136	3	4	737	1	0	0	0	0	1	0	0	0	13063	942	33	2	98	2	RAD18	3	8923136	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		8923136	189099294	52	65033										
SRGAP3	0	genome.wustl.edu	37	chr3	9052010	9052010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	accttcatcgctggtatgagGctcagtgccattgtcatggt	11	10	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	9052010	9052010	G	A	SNP	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	missense	c.2209	p.P737S	1.000	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	57	0	0	94	18	16.07	-	-	-	A	9052010	G	A	9052010	3	1	737	1	0	0	0	0	1	0	0	0	15238	1203	42	4	1110	4	SRGAP3	3	9052010	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	128874	9052010	188970420	53	65034										
LRRFIP2	0	genome.wustl.edu	37	chr3	37152548	37152548	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tagtttctctggtcaaagtaGaggccactctgcaaaaagca	9	9	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	37152548	37152548	G	C	SNP	LRRFIP2	ENST00000336686	human	ensembl	69_37n	-1	known	silent	c.447	p.L149	1.000	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_HLH_DNA-bd,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	65	0	0	71	26	26.8	-	-	-	C	37152548	G	C	37152548	2	2	737	1	0	0	0	0	0	0	0	1	9094	929	33	2		2	LRRFIP2	3	37152548	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	28100538	37152548	160869882	54	65035										
ZMYND10	0	genome.wustl.edu	37	chr3	50381203	50381203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggtgttctggggcttgaagtCctccaccctgcagaacacag	12	12	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	50381203	50381203	C	T	SNP	ZMYND10	ENST00000231749	human	ensembl	69_37n	-1	known	missense	c.280	p.D94N	1.000	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838	26	0	0	45	16	26.23	-	-	-	T	50381203	C	T	50381203	3	4	737	1	0	0	0	0	1	0	0	0	17801	855	30	2	1082	2	ZMYND10	3	50381203	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	13228655	50381203	147641227	55	65036										
PCBP4	0	genome.wustl.edu	37	chr3	51992953	51992953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cgctgatcttgctgccctggCgcccgatcacacagccaatc	9	17	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	51992953	51992953	C	T	SNP	PCBP4	ENST00000395014	human	ensembl	69_37n	-1	known	missense	c.839	p.R280H	0.994	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097	31	0	0	62	30	32.61	-	-	-	T	51992953	C	T	51992953	3	4	737	1	0	0	0	0	1	0	0	0	11576	768	27	1	443	1	PCBP4	3	51992953	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1611750	51992953	146029477	56	65037										
GXYLT2	0	genome.wustl.edu	37	chr3	73024283	73024283	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tatgagaaacacgtcatcatCcatgttggccccaaccagat	7	12	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	73024283	73024283	C	A	SNP	GXYLT2	ENST00000389617	human	ensembl	69_37n	1	known	silent	c.1305	p.I435	0.997	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT2	HGNC	ENSG00000172986	49	0	0	53	20	27.4	-	-	-	A	73024283	C	A	73024283	2	1	737	1	0	0	0	0	0	0	0	1	6955	845	30	2		2	GXYLT2	3	73024283	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	21031330	73024283	124998147	57	65038										
MYH15	0	genome.wustl.edu	37	chr3	108156543	108156543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctcctgctcaagggcaccctCaagctgacaaaaggaaacat	8	13	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	108156543	108156543	C	G	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.3139	p.E1047Q	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	90	0	0	106	58	35.37	-	-	-	G	108156543	C	G	108156543	3	3	737	1	0	0	0	0	1	0	0	0	10106	835	29	2	2769	2	MYH15	3	108156543	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	35132260	108156543	89865887	58	65039										
MYH15	0	genome.wustl.edu	37	chr3	108203971	108203971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgcttccagttgctcttctcTaggtttctgtttaaatttca	6	9	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	108203971	108203971	T	C	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.1141	p.R381G	0.962	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	95	0	0	68	33	32.67	-	-	-	C	108203971	T	C	108203971	3	2	737	1	0	0	0	0	1	0	0	0	10106	1530	53	5	4823	5	MYH15	3	108203971	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09	47428	108203971	89818459	59	65040										
PHLDB2	0	genome.wustl.edu	37	chr3	111602931	111602931	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	attccagcaagattatggaaGagcatagctacatacaaaag	8	7	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	111602931	111602931	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.7	p.E3K	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	47	0	0	39	9	18.75	-	-	-	A	111602931	G	A	111602931	3	1	737	1	0	0	0	0	1	0	0	0	11926	943	33	2	94	2	PHLDB2	3	111602931	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	3398960	111602931	86419499	60	65041										
HCLS1	0	genome.wustl.edu	37	chr3	121363760	121363760	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctccacctcggcaacatactCatggcccactgcactctgag	7	17	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	121363760	121363760	C	G	SNP	HCLS1	ENST00000314583	human	ensembl	69_37n	-1	known	missense	c.304	p.E102Q	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	39	0	0	29	19	38.78	-	-	-	G	121363760	C	G	121363760	3	3	737	1	0	0	0	0	1	0	0	0	7046	835	29	2	1196	2	HCLS1	3	121363760	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	9760829	121363760	76658670	61	65042										
C3orf36	0	genome.wustl.edu	37	chr3	133647532	133647532	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aggccattcctccaggccctGagggggcagagagacacgtg	15	12	0	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	133647532	133647532	G	A	SNP	C3orf36	ENST00000408895	human	ensembl	69_37n	-1	known	missense	c.116	p.S39L	0.002	NULL	NULL	-	no_errors	C3orf36	HGNC	ENSG00000221972	13	0	0	22	7	24.14	-	-	-	A	133647532	G	A	133647532	3	1	737	1	0	0	0	0	1	0	0	0	2246	1294	45	2	385	2	C3orf36	3	133647532	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	12283772	133647532	64374898	62	65043										
FAM194A	0	genome.wustl.edu	37	chr3	150396303	150396303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctgtttttctggaatatccaCagaaagttgataagaaattg	8	5	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	150396303	150396303	C	A	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	missense	c.1150	p.V384L	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	88	0	0	55	20	26.67	-	-	-	A	150396303	C	A	150396303	3	1	737	1	0	0	0	0	1	0	0	0	5568	478	17	4	861	4	FAM194A	3	150396303	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	16748771	150396303	47626127	63	65044										
NAALADL2	0	genome.wustl.edu	37	chr3	174814752	174814752	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctagacggtgctgagaatcaGaacctagggcattcagagac	12	9	2	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	174814752	174814752	G	A	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	silent	c.216	p.Q72	0.999	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	31	0	0	12	16	57.14	-	-	-	A	174814752	G	A	174814752	2	1	737	1	0	0	0	0	0	0	0	1	10202	933	33	2		2	NAALADL2	3	174814752	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	24418449	174814752	23207678	64	65045										
TBL1XR1	0	genome.wustl.edu	37	chr3	176782763	176782763	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acctcatcactgcttatactCatctttattcccacttaaac	1	14	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	176782763	176782763	C	G	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	59	0	0	37	18	32.73	-	-	-	G	176782763	C	G	176782763	3	3	737	1	0	0	0	0	1	0	0	0	15735	826	29	2	1597	2	TBL1XR1	3	176782763	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1968011	176782763	21239667	65	65046										
TFRC	0	genome.wustl.edu	37	chr3	195802123	195802123	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	attggcctttgtgttattgtCagcattttcttcttcatcta	6	8	5	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	3	195802123	195802123	C	A	SNP	TFRC	ENST00000360110	human	ensembl	69_37n	-1	known	missense	c.145	p.D49Y	0.957	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274	137	0	0	155	58	27.23	-	-	-	A	195802123	C	A	195802123	3	1	737	1	0	0	0	0	1	0	0	0	15907	826	29	2	2205	2	TFRC	3	195802123	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	19019360	195802123	2220307	66	65047										
TMEM175	0	genome.wustl.edu	37	chr4	952146	952146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atcgccgtgccctgcgccttCctgttgctgcgcctgctcgt	11	17	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	952146	952146	C	T	SNP	TMEM175	ENST00000505148	human	ensembl	69_37n	1	novel	missense	c.886	p.P296S	1.000	NULL	pfam_DUF1211_TMEM175	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM175	HGNC	ENSG00000127419	18	0	0	45	15	25	-	-	-	T	952146	C	T	952146	3	4	737	1	0	0	0	0	1	0	0	0	16186	854	30	2	1415	2	TMEM175	4	952146	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		952146	190202130	67	65048										
FAM193A	0	genome.wustl.edu	37	chr4	2701776	2701776	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ccaggccagggctaggggctGatggggatgctgcagacccc	17	12	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	2701776	2701776	G	A	SNP	FAM193A	ENST00000324666	human	ensembl	69_37n	1	known	missense	c.3004	p.D1002N	0.004	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	29	0	0	29	15	34.09	-	-	-	A	2701776	G	A	2701776	3	1	737	1	0	0	0	0	1	0	0	0	5566	1290	45	2	3062	2	FAM193A	4	2701776	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1749630	2701776	188452500	68	65049										
AMBN	0	genome.wustl.edu	37	chr4	71471980	71471980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggcccggctttgagggaatgCcccacaacccagctatgggc	13	14	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	71471980	71471980	C	T	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	missense	c.877	p.P293S	0.093	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	34	0	0	36	11	23.4	-	-	-	T	71471980	C	T	71471980	3	4	737	1	0	0	0	0	1	0	0	0	563	739	26	4	927	4	AMBN	4	71471980	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	68770204	71471980	119682296	69	65050										
UTP3	0	genome.wustl.edu	37	chr4	71554953	71554953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	attttggtgtcgcctgggttGaggcctttgcaaaaccagtg	13	8	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	71554953	71554953	G	A	SNP	UTP3	ENST00000254803	human	ensembl	69_37n	1	known	missense	c.559	p.E187K	0.988	NULL	pfam_Sas10_C,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	26	0	0	18	10	35.71	-	-	-	A	71554953	G	A	71554953	3	1	737	1	0	0	0	0	1	0	0	0	17198	1291	45	2	561	2	UTP3	4	71554953	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	82973	71554953	119599323	70	65051										
NUDT9	0	genome.wustl.edu	37	chr4	88356370	88356370	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aggtgggcagatcctcagatCaggtgagcaaataagacagc	13	8	2	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	88356370	88356370	C	T	SNP	NUDT9	ENST00000302174	human	ensembl	69_37n	1	known	silent	c.345	p.I115	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT9	HGNC	ENSG00000170502	59	0	0	51	20	28.17	-	-	-	T	88356370	C	T	88356370	2	4	737	1	0	0	0	0	0	0	0	1	10819	816	29	2		2	NUDT9	4	88356370	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	16801417	88356370	102797906	71	65052										
MANBA	0	genome.wustl.edu	37	chr4	103557111	103557111	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aaagcctactggcaacagtgGagcaaagaaattctgagcaa	10	8	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	103557111	103557111	G	C	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	missense	c.2068	p.P690A	0.987	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	32	0	0	37	22	37.29	-	-	-	C	103557111	G	C	103557111	3	2	737	1	0	0	0	0	1	0	0	0	9290	1174	41	2	583	2	MANBA	4	103557111	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	15200741	103557111	87597165	72	65053										
ANKRD50	0	genome.wustl.edu	37	chr4	125590860	125590860	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tagatgaagtagttctcaaaGatgaattttttgagcttttc	8	4	1	5			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	125590860	125590860	G	C	SNP	ANKRD50	ENST00000504087	human	ensembl	69_37n	-1	known	missense	c.3572	p.S1191C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD50	HGNC	ENSG00000151458	31	0	0	31	14	31.11	-	-	-	C	125590860	G	C	125590860	3	2	737	1	0	0	0	0	1	0	0	0	676	942	33	2	721	2	ANKRD50	4	125590860	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	22033749	125590860	65563416	73	65054										
CLCN3	0	genome.wustl.edu	37	chr4	170601266	170601266	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cacatttactggatcttttgGatgaaccaattccaggtgtt	8	8	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	4	170601266	170601266	G	T	SNP	CLCN3	ENST00000347613	human	ensembl	69_37n	1	known	missense	c.226	p.D76Y	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572	100	0	0	125	33	20.89	-	-	-	T	170601266	G	T	170601266	3	4	737	1	0	0	0	0	1	0	0	0	3494	1174	41	2	232	2	CLCN3	4	170601266	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	45010406	170601266	20553010	74	65055										
HCN1	0	genome.wustl.edu	37	chr5	45645589	45645589	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtccaataggaaaactgtatCtgatgccacattgaaaataa	7	7	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	45645589	45645589	C	G	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	missense	c.547	p.D183H	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	37	0	0	36	14	28	-	-	-	G	45645589	C	G	45645589	3	3	737	1	0	0	0	0	1	0	0	0	7047	913	32	2	2153	2	HCN1	5	45645589	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		45645589	135269671	75	65056										
MAP1B	0	genome.wustl.edu	37	chr5	71495716	71495716	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atcacggccgatgccaatatCgactctgaagacgagtcgga	11	11	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	71495716	71495716	C	G	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.6534	p.I2178M	0.685	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	34	0	0	67	18	21.18	-	-	-	G	71495716	C	G	71495716	3	3	737	1	0	0	0	0	1	0	0	0	9299	874	31	3	6552	3	MAP1B	5	71495716	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	25850127	71495716	109419544	76	65057										
DMGDH	0	genome.wustl.edu	37	chr5	78324375	78324375	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcagtttctgaaggacctttCttgcctgtggcccagcaact	9	12	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	78324375	78324375	C	T	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	missense	c.1913	p.R638K	1.000	pfam_GCV_T_N,pfam_SoxG	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	72	0	0	121	22	15.38	-	-	-	T	78324375	C	T	78324375	3	4	737	1	0	0	0	0	1	0	0	0	4617	913	32	2	707	2	DMGDH	5	78324375	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	6828659	78324375	102590885	77	65058										
SNCAIP	0	genome.wustl.edu	37	chr5	121786491	121786491	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggatgctcaggcttcctctaGaaattctaaaaagatcccac	7	11	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	121786491	121786491	G	C	SNP	SNCAIP	ENST00000379533	human	ensembl	69_37n	1	known	missense	c.2090	p.R697T	0.986	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692	30	0	0	37	15	28.85	-	-	-	C	121786491	G	C	121786491	3	2	737	1	0	0	0	0	1	0	0	0	14930	942	33	2	1983	2	SNCAIP	5	121786491	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	43462116	121786491	59128769	78	65059										
JAKMIP2	0	genome.wustl.edu	37	chr5	147019219	147019219	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gcttctcgttcagcgtcgatGatgcctcccgtctgctcctg	10	15	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	147019219	147019219	G	A	SNP	JAKMIP2	ENST00000265272	human	ensembl	69_37n	-1	known	silent	c.1506	p.I502	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049	85	0	0	145	45	23.68	-	-	-	A	147019219	G	A	147019219	2	1	737	1	0	0	0	0	0	0	0	1	7995	1280	45	2		2	JAKMIP2	5	147019219	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	25232728	147019219	33896041	79	65060										
PDGFRB	0	genome.wustl.edu	37	chr5	149513324	149513324	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggctccaccagccgcccactCtgcagcaacaggttgggcag	12	16	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	149513324	149513324	C	G	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	splice_site	c.760-1	e5-1	1.000	-	-	-	no_errors	PDGFRB	HGNC	ENSG00000113721	41	0	0	57	13	18.57	-	-	-	G	149513324	C	G	149513324	5	3	737	1	0	0	0	0	0	0	1	0	11735	927	32	2	2633	2	PDGFRB	5	149513324	Splice_Site	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2494105	149513324	31401936	80	65061										
TCOF1	0	genome.wustl.edu	37	chr5	149755376	149755376	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gggcctgtagccgtccaggtCaaggctgaaaagcccatgga	14	11	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	149755376	149755376	C	G	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	silent	c.1797	p.V599	0.132	pfam_TCS_treacle,prints_Treacle-like_TCS	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	29	0	0	48	11	18.64	-	-	-	G	149755376	C	G	149755376	2	3	737	1	0	0	0	0	0	0	0	1	15803	813	29	2		2	TCOF1	5	149755376	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	242052	149755376	31159884	81	65062										
TNIP1	0	genome.wustl.edu	37	chr5	150425460	150425460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagcatcttcaccttcttctCggctgcgcccaaggccacca	7	18	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	150425460	150425460	C	T	SNP	TNIP1	ENST00000315050	human	ensembl	69_37n	-1	known	missense	c.898	p.E300K	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901	31	0	0	110	43	28.1	-	-	-	T	150425460	C	T	150425460	3	4	737	1	0	0	0	0	1	0	0	0	16409	893	31	1	1052	1	TNIP1	5	150425460	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	670084	150425460	30489800	82	65063										
TBC1D9B	0	genome.wustl.edu	37	chr5	179294845	179294845	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gactcggcttcctctgggctCagagctgtgcttggagagaa	14	10	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	179294845	179294845	C	G	SNP	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	silent	c.2796	p.L932	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	34	0	0	84	23	21.5	-	-	-	G	179294845	C	G	179294845	2	3	737	1	0	0	0	0	0	0	0	1	15723	813	29	2		2	TBC1D9B	5	179294845	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	28869385	179294845	1620415	83	65064										
OR2Y1	0	genome.wustl.edu	37	chr5	180166207	180166207	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agtgtataaatgagaggattGagaatgggggtaattatagt	14	0	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	180166207	180166207	G	C	SNP	OR2Y1	ENST00000307832	human	ensembl	69_37n	-1	known	silent	c.852	p.L284	0.055	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339	59	0	0	56	16	22.22	-	-	-	C	180166207	G	C	180166207	2	2	737	1	0	0	0	0	0	0	0	1	11108	1277	45	2		2	OR2Y1	5	180166207	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	871362	180166207	749053	84	65065										
BTNL9	0	genome.wustl.edu	37	chr5	180477125	180477125	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cacctctcccttgagggcttCaaggaaggaggcattcagct	11	12	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	5	180477125	180477125	C	G	SNP	BTNL9	ENST00000376842	human	ensembl	69_37n	1	known	missense	c.492	p.F164L	0.987	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL9	HGNC	ENSG00000165810	27	0	0	65	12	15.58	-	-	-	G	180477125	C	G	180477125	3	3	737	1	0	0	0	0	1	0	0	0	1577	825	29	2	502	2	BTNL9	5	180477125	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	310918	180477125	438135	85	65066										
HIVEP1	0	genome.wustl.edu	37	chr6	12121104	12121104	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggattctgcttcacctttgtCaataagtccggctaattcta	7	10	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	12121104	12121104	C	G	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	nonsense	c.1076	p.S359*	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	42	0	0	33	32	49.23	-	-	-	G	12121104	C	G	12121104	4	3	737	1	0	0	0	0	0	1	0	0	7237	838	29	2	1086	2	HIVEP1	6	12121104	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		12121104	158993963	86	65067										
HIST1H4H	0	genome.wustl.edu	37	chr6	26285573	26285573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gaacaccacgagtctcctcaTagataaggccagaaattcgc	8	12	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	26285573	26285573	T	C	SNP	HIST1H4H	ENST00000289352	human	ensembl	69_37n	-1	known	missense	c.155	p.Y52C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4H	HGNC	ENSG00000158406	48	0	0	65	52	44.44	-	-	-	C	26285573	T	C	26285573	3	2	737	1	0	0	0	0	1	0	0	0	7223	1406	49	5	160	5	HIST1H4H	6	26285573	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09	14164469	26285573	144829494	87	65068										
TMEM63B	0	genome.wustl.edu	37	chr6	44107235	44107235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tccgggacaaatgtgggggcGatgccgtgcactacctgtcc	14	12	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	44107235	44107235	G	A	SNP	TMEM63B	ENST00000259746	human	ensembl	69_37n	1	known	missense	c.439	p.D147N	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	42	0	0	144	35	19.55	-	-	-	A	44107235	G	A	44107235	3	1	737	1	0	0	0	0	1	0	0	0	16286	1058	37	1	461	1	TMEM63B	6	44107235	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	17821662	44107235	127007832	88	65069										
DST	0	genome.wustl.edu	37	chr6	56362779	56362779	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttcttctcctgcacttgattCaattagatcatttcctgctt	4	11	4	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	56362779	56362779	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.19876	p.E6626Q	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	107	0	0	175	60	25.32	-	-	-	G	56362779	C	G	56362779	3	3	737	1	0	0	0	0	1	0	0	0	4818	835	29	2	3507	2	DST	6	56362779	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	12255544	56362779	114752288	89	65070										
DST	0	genome.wustl.edu	37	chr6	56458841	56458841	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgactcagccagtgcagtttCataatgcactttcagttcct	7	11	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	56458841	56458841	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.12253	p.E4085K	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	41	0	0	80	15	15.79	-	-	-	T	56458841	C	T	56458841	3	4	737	1	0	0	0	0	1	0	0	0	4818	835	29	2	11262	2	DST	6	56458841	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	96062	56458841	114656226	90	65071										
BEND6	0	genome.wustl.edu	37	chr6	56857350	56857350	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gacagtctttggtcatgcttCaaggtaaactttgagaaaat	9	6	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	56857350	56857350	C	T	SNP	BEND6	ENST00000370746	human	ensembl	69_37n	1	known	nonsense	c.295	p.Q99*	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917	62	0	0	76	36	32.14	-	-	-	T	56857350	C	T	56857350	4	4	737	1	0	0	0	0	0	1	0	0	1406	827	29	2	301	2	BEND6	6	56857350	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	398509	56857350	114257717	91	65072										
KIAA1009	0	genome.wustl.edu	37	chr6	84870632	84870632	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agattcagctttcagtttctCaatctgtcaataaataaata	4	7	5	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	84870632	84870632	C	T	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.2680	p.E894K	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	126	0	0	97	70	41.92	-	-	-	T	84870632	C	T	84870632	3	4	737	1	0	0	0	0	1	0	0	0	8255	835	29	2	1559	2	KIAA1009	6	84870632	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	28013282	84870632	86244435	92	65073										
MAP3K5	0	genome.wustl.edu	37	chr6	136901490	136901490	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cgccttccgaatgatactgtCtaaggcaaacatccagtgcg	9	12	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	136901490	136901490	C	G	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.3466	p.D1156H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	99	0	0	126	85	40.09	-	-	-	G	136901490	C	G	136901490	3	3	737	1	0	0	0	0	1	0	0	0	9324	913	32	2	682	2	MAP3K5	6	136901490	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	52030858	136901490	34213577	93	65074										
SASH1	0	genome.wustl.edu	37	chr6	148865073	148865073	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttccatctgccggagctgtGagaccctggagggcccccag	13	14	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	148865073	148865073	G	A	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.2467	p.E823K	1.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	20	0	0	40	15	27.27	-	-	-	A	148865073	G	A	148865073	3	1	737	1	0	0	0	0	1	0	0	0	13935	1291	45	2	2537	2	SASH1	6	148865073	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	11963583	148865073	22249994	94	65075										
ESR1	0	genome.wustl.edu	37	chr6	152332832	152332832	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atgatcaggtccaccttctaGaatgtgcctggctagagatc	10	10	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	152332832	152332832	G	C	SNP	ESR1	ENST00000206249	human	ensembl	69_37n	1	known	missense	c.1138	p.E380Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	64	0	0	62	26	29.55	-	-	-	C	152332832	G	C	152332832	3	2	737	1	0	0	0	0	1	0	0	0	5293	943	33	2	1156	2	ESR1	6	152332832	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	3467759	152332832	18782235	95	65076										
T	0	genome.wustl.edu	37	chr6	166575969	166575969	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cgatgagcataggggctgggGtagggtgaggaccggtggct	21	6	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	6	166575969	166575969	G	A	SNP	T	ENST00000296946	human	ensembl	69_37n	-1	known	silent	c.870	p.Y290	1.000	prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_Brachyury,prints_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458	38	0	0	55	38	40.86	-	-	-	A	166575969	G	A	166575969	2	1	737	1	0	0	0	0	0	0	0	1	15580	1256	44	4		4	T	6	166575969	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	14243137	166575969	4539098	96	65077										
EIF3B	0	genome.wustl.edu	37	chr7	2418363	2418363	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agaaatactctaagatctttGaacagaaggatcgtttgagt	9	5	2	5			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	2418363	2418363	G	C	SNP	EIF3B	ENST00000360876	human	ensembl	69_37n	1	known	missense	c.2194	p.E732Q	1.000	pirsf_eIF3b	pfam_TIF2A_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3b,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263	50	0	0	51	27	34.62	-	-	-	C	2418363	G	C	2418363	3	2	737	1	0	0	0	0	1	0	0	0	5048	1291	45	2	2256	2	EIF3B	7	2418363	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		2418363	156720300	97	65078										
PKD1L1	0	genome.wustl.edu	37	chr7	47917162	47917162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tggggctgcacctgacaggcCatgtcccgaggagccgggtt	16	12	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	47917162	47917162	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.3588	p.M1196I	0.358	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	33	0	0	60	18	23.08	-	-	-	T	47917162	C	T	47917162	3	4	737	1	0	0	0	0	1	0	0	0	12038	594	21	4	5105	4	PKD1L1	7	47917162	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	45498799	47917162	111221501	98	65079										
ABCA13	0	genome.wustl.edu	37	chr7	48308665	48308665	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caatttttgaataacttactCaagtctccaacagcttccat	3	11	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	48308665	48308665	C	G	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	silent	c.2094	p.L698	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	54	0	0	23	12	33.33	-	-	-	G	48308665	C	G	48308665	2	3	737	1	0	0	0	0	0	0	0	1	31	813	29	2		2	ABCA13	7	48308665	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	391503	48308665	110829998	99	65080										
NAMPT	0	genome.wustl.edu	37	chr7	105908931	105908931	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgtgttctgctgctggaacaGaatagcctggaacaggatct	12	8	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	105908931	105908931	G	A	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	missense	c.722	p.S241F	1.000	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835	29	0	0	30	13	30.23	-	-	-	A	105908931	G	A	105908931	3	1	737	1	0	0	0	0	1	0	0	0	10221	942	33	2	777	2	NAMPT	7	105908931	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	57600266	105908931	53229732	100	65081										
TFEC	0	genome.wustl.edu	37	chr7	115614246	115614246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttctttgcattagcagaggaGagtctgctccttcctcttta	8	10	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	115614246	115614246	G	C	SNP	TFEC	ENST00000265440	human	ensembl	69_37n	-1	known	missense	c.245	p.S82C	0.995	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFEC	HGNC	ENSG00000105967	50	0	0	57	13	18.57	-	-	-	C	115614246	G	C	115614246	3	2	737	1	0	0	0	0	1	0	0	0	15897	942	33	2	822	2	TFEC	7	115614246	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	9705315	115614246	43524417	101	65082										
TMEM209	0	genome.wustl.edu	37	chr7	129825043	129825043	+	Missense_Mutation	SNP	C	C	A													0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tccacttacctcttctgcggCttgtttagagctgagatcgg							TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	129825043	129825043	C	A	SNP	TMEM209	ENST00000397622	human	ensembl	69_37n	-1	known	missense	c.940	p.A314S	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842	78	0	0	94	30	24	-	-	-	A	129825043	C	A	129825043	3	1	737	1	0	0	0	0	1	0	0	0	16229	797	28	4	781	4	TMEM209	7	129825043	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	14210797	129825043	29313620	102	65083	474	2								
TMEM209	0	genome.wustl.edu	37	chr7	129825045	129825045	+	Missense_Mutation	SNP	T	T	G													0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cacttacctcttctgcggctTgtttagagctgagatcggct							TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	129825045	129825045	T	G	SNP	TMEM209	ENST00000397622	human	ensembl	69_37n	-1	known	missense	c.938	p.Q313P	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842	79	0	0	95	33	25.78	-	-	-	G	129825045	T	G	129825045	3	3	737	1	0	0	0	0	1	0	0	0	16229	1812	63	5	783	5	TMEM209	7	129825045	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09	2	129825045	29313618	103	65084	474	2								
CPA1	0	genome.wustl.edu	37	chr7	130023264	130023264	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggcagtaagcgtccagccatCtggatcgacacgggcatcca	12	13	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	130023264	130023264	C	G	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.516	p.I172M	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	29	0	0	34	9	20.93	-	-	-	G	130023264	C	G	130023264	3	3	737	1	0	0	0	0	1	0	0	0	3819	903	32	2	534	2	CPA1	7	130023264	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	198219	130023264	29115399	104	65085										
BRAF	0	genome.wustl.edu	37	chr7	140482838	140482838	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	taccattcgattcctgtcttCtgaggatgaagatgacttcc	8	10	2	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	140482838	140482838	C	T	SNP	BRAF	ENST00000288602	human	ensembl	69_37n	-1	known	missense	c.1297	p.E433K	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	55	0	0	67	24	26.37	-	-	-	T	140482838	C	T	140482838	3	4	737	1	0	0	0	0	1	0	0	0	1504	922	32	2	1039	2	BRAF	7	140482838	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10459574	140482838	18655825	105	65086										
RNF32	0	genome.wustl.edu	37	chr7	156451274	156451274	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttgaaaaaaaggtaggtaaaGatcattatgttctccagata	8	4	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	7	156451274	156451274	G	C	SNP	RNF32	ENST00000463028	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF32	HGNC	ENSG00000105982	46	0	0	54	12	18.18	-	-	-	C	156451274	G	C	156451274	1	2	737	0	1	0	0	0	0	0	0	0	13574	957	33	2		2	RNF32	7	156451274	RNA	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	15968436	156451274	2687389	106	65087										
CDCA2	0	genome.wustl.edu	37	chr8	25319576	25319576	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gagtttcattacaggaaagtCatcatcctaccttaaaaaat	5	8	3	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	8	25319576	25319576	C	T	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.239	p.S80L	0.942	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	57	0	0	47	39	45.35	-	-	-	T	25319576	C	T	25319576	3	4	737	1	0	0	0	0	1	0	0	0	3115	838	29	2	249	2	CDCA2	8	25319576	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		25319576	121044446	107	65088										
MCM4	0	genome.wustl.edu	37	chr8	48888382	48888382	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	taaaataccagcaactttttGaagatattcggggacaatct	7	7	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	8	48888382	48888382	G	T	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	1	known	nonsense	c.2473	p.E825*	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	63	0	0	51	37	42.05	-	-	-	T	48888382	G	T	48888382	4	4	737	1	0	0	0	0	0	1	0	0	9460	1291	45	2	2531	2	MCM4	8	48888382	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	23568806	48888382	97475640	108	65089										
TRPA1	0	genome.wustl.edu	37	chr8	72967687	72967687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcacctgagaaacaatgcacCttttttcagaagaagctgaa	7	9	2	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	8	72967687	72967687	C	T	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.1513	p.G505S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	44	0	0	41	43	51.19	-	-	-	T	72967687	C	T	72967687	3	4	737	1	0	0	0	0	1	0	0	0	16673	681	24	4	1910	4	TRPA1	8	72967687	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	24079305	72967687	73396335	109	65090										
SDC2	0	genome.wustl.edu	37	chr8	97605736	97605736	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gctgacatctgataaagacaTgtaccttgacaacagctcca	7	11	1	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	8	97605736	97605736	T	C	SNP	SDC2	ENST00000302190	human	ensembl	69_37n	1	known	missense	c.89	p.M30T	1.000	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC2	HGNC	ENSG00000169439	43	0	0	58	46	44.23	-	-	-	C	97605736	T	C	97605736	3	2	737	1	0	0	0	0	1	0	0	0	14040	1464	51	5	95	5	SDC2	8	97605736	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09	24638049	97605736	48758286	110	65091										
TG	0	genome.wustl.edu	37	chr8	133911059	133911059	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acaggcccgacaacctgcgaGaaatctcgaaccagtgggct	11	13	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	8	133911059	133911059	G	C	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.3234	p.E1078D	0.887	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	28	0	0	66	14	17.5	-	-	-	C	133911059	G	C	133911059	3	2	737	1	0	0	0	0	1	0	0	0	15908	933	33	2	3288	2	TG	8	133911059	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	36305323	133911059	12452963	111	65092										
ANXA1	0	genome.wustl.edu	37	chr9	75773488	75773488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aattcctcaagcaggcctggTttattgaaaatgaagagcag	10	7	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	75773488	75773488	T	C	SNP	ANXA1	ENST00000257497	human	ensembl	69_37n	1	known	missense	c.37	p.F13L	1.000	prints_AnnexinI	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	78	0	0	110	27	19.71	-	-	-	C	75773488	T	C	75773488	3	2	737	1	0	0	0	0	1	0	0	0	713	1725	60	5	39	5	ANXA1	9	75773488	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09		75773488	65439943	112	65093										
TRPM6	0	genome.wustl.edu	37	chr9	77357501	77357501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagttggactggtgtaaatgGtatggtctgagaaagcctca	13	6	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	77357501	77357501	G	T	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.5188	p.P1730T	1.000	superfamily_Kinase-like_dom	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	67	0	0	84	16	16	-	-	-	T	77357501	G	T	77357501	3	4	737	1	0	0	0	0	1	0	0	0	16686	1261	44	4	920	4	TRPM6	9	77357501	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1584013	77357501	63855930	113	65094										
PTCH1	0	genome.wustl.edu	37	chr9	98278822	98278822	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gctgggcttggatttcacatCaattccttttttttccctgg	8	10	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	98278822	98278822	C	G	SNP	PTCH1	ENST00000551425	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	PTCH1	HGNC	ENSG00000185920	47	0	0	86	16	15.69	-	-	-	G	98278822	C	G	98278822	1	3	737	0	1	0	0	0	0	0	0	0	12810	841	29	2		2	PTCH1	9	98278822	RNA	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	20921321	98278822	42934609	114	65095										
GALNT12	0	genome.wustl.edu	37	chr9	101594117	101594117	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtgatcgactggaacaccttCgaatacctggggaactccgg	12	11	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	101594117	101594117	C	T	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	silent	c.795	p.F265	0.620	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	45	0	0	114	24	17.39	-	-	-	T	101594117	C	T	101594117	2	4	737	1	0	0	0	0	0	0	0	1	6260	883	31	1		1	GALNT12	9	101594117	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3315295	101594117	39619314	115	65096										
OR13C3	0	genome.wustl.edu	37	chr9	107298538	107298538	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caagtaatgtttgcacagctGaatttattccaccggacagc	8	10	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	107298538	107298538	G	C	SNP	OR13C3	ENST00000374781	human	ensembl	69_37n	-1	known	nonsense	c.557	p.S186*	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR13C3	HGNC	ENSG00000204246	44	0	0	48	16	25	-	-	-	C	107298538	G	C	107298538	4	2	737	1	0	0	0	0	0	1	0	0	11008	1294	45	2	490	2	OR13C3	9	107298538	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	5704421	107298538	33914893	116	65097										
OR13C8	0	genome.wustl.edu	37	chr9	107332382	107332382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctgctgtcaaaaacatactgTgtaggaaaaacttttctgat	7	7	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	107332382	107332382	T	C	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	1	known	missense	c.934	p.C312R	0.025	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	21	0	0	31	8	20.51	-	-	-	C	107332382	T	C	107332382	3	2	737	1	0	0	0	0	1	0	0	0	11011	1696	59	5	936	5	OR13C8	9	107332382	Missense_Mutation	SNP	T	TCGA-D8-A27V-01A-12D-A17D-09	33844	107332382	33881049	117	65098										
ACTL7B	0	genome.wustl.edu	37	chr9	111617311	111617311	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agggagggctggaagagcatCtcagagcaacggaagcgctc	16	9	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	111617311	111617311	C	T	SNP	ACTL7B	ENST00000374667	human	ensembl	69_37n	-1	known	silent	c.900	p.E300	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7B	HGNC	ENSG00000148156	9	0	0	34	7	17.07	-	-	-	T	111617311	C	T	111617311	2	4	737	1	0	0	0	0	0	0	0	1	201	912	32	2		2	ACTL7B	9	111617311	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	4284929	111617311	29596120	118	65099										
IKBKAP	0	genome.wustl.edu	37	chr9	111653584	111653584	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tgccacatgtcagaaaggctGagagagctttctcgtgggca	13	9	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	111653584	111653584	G	A	SNP	IKBKAP	ENST00000495759	human	ensembl	69_37n	-1	known	nonsense	c.199	p.Q67*	0.055	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_UBA-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	IKBKAP	HGNC	ENSG00000070061	28	0	0	58	14	19.44	-	-	-	A	111653584	G	A	111653584	4	1	737	1	0	0	0	0	0	1	0	0	7664	1294	45	2	979	2	IKBKAP	9	111653584	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	36273	111653584	29559847	119	65100										
PAPPA	0	genome.wustl.edu	37	chr9	119106885	119106885	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gctgtggagaatgcttctctCaattgctccagcagcgaccg	11	12	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	119106885	119106885	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	silent	c.3675	p.L1225	1.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	33	0	0	87	17	16.19	-	-	-	T	119106885	C	T	119106885	2	4	737	1	0	0	0	0	0	0	0	1	11505	813	29	2		2	PAPPA	9	119106885	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	7453301	119106885	22106546	120	65101										
FUBP3	0	genome.wustl.edu	37	chr9	133491806	133491806	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atggacctggctttcataatGacatagacagcaacagcaca	8	10	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	133491806	133491806	G	T	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	missense	c.469	p.D157Y	0.998	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	37	0	0	83	20	19.42	-	-	-	T	133491806	G	T	133491806	3	4	737	1	0	0	0	0	1	0	0	0	6142	1290	45	2	495	2	FUBP3	9	133491806	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	14384921	133491806	7721625	121	65102										
SDCCAG3	0	genome.wustl.edu	37	chr9	139301960	139301960	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tactccaggccatacccgccGgtttgggagggtggggagtt	16	10	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	9	139301960	139301960	G	T	SNP	SDCCAG3	ENST00000357365	human	ensembl	69_37n	-1	known	silent	c.456	p.T152	0.000	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689	24	0	0	40	10	20	-	-	-	T	139301960	G	T	139301960	2	4	737	1	0	0	0	0	0	0	0	1	14046	1103	39	3		3	SDCCAG3	9	139301960	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	5810154	139301960	1911471	122	65103										
IDI1	0	genome.wustl.edu	37	chr10	1087147	1087147	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcacattctgtatattttctCatggtcaacaaactgattca	4	9	5	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	1087147	1087147	C	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.835	p.E279K	1.000	pirsf_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	34	0	0	19	11	36.67	-	-	-	T	1087147	C	T	1087147	3	4	737	1	0	0	0	0	1	0	0	0	7553	835	29	2	23	2	IDI1	10	1087147	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		1087147	134447600	123	65104										
HNRNPF	0	genome.wustl.edu	37	chr10	43882375	43882375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcttccatctgggccaatctCaatatggactctcacagggt	8	12	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	43882375	43882375	C	G	SNP	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	missense	c.958	p.E320Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	45	0	0	49	14	22.22	-	-	-	G	43882375	C	G	43882375	3	3	737	1	0	0	0	0	1	0	0	0	7316	835	29	2	293	2	HNRNPF	10	43882375	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	42795228	43882375	91652372	124	65105										
C10orf71	0	genome.wustl.edu	37	chr10	50533042	50533042	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gaaccaggaaggcatcagcaGaggaagctaatttcagaggc	13	8	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	50533042	50533042	G	C	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	1	known	missense	c.2452	p.E818Q	0.956	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	48	0	0	62	25	28.74	-	-	-	C	50533042	G	C	50533042	3	2	737	1	0	0	0	0	1	0	0	0	1624	943	33	2	2454	2	C10orf71	10	50533042	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	6650667	50533042	85001705	125	65106										
HK1	0	genome.wustl.edu	37	chr10	71060618	71060618	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aaagagccctgcatgattttGtacgtagaaaatcctggaat	9	7	0	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	71060618	71060618	G	C	SNP	HK1	ENST00000360289	human	ensembl	69_37n	1	known	splice_site	c.27+1	e1+1	0.054	-	-	-	no_errors	HK1	HGNC	ENSG00000156515	67	0	0	35	15	30	-	-	-	C	71060618	G	C	71060618	5	2	737	1	0	0	0	0	0	0	1	0	7241	1391	48	4	113	4	HK1	10	71060618	Splice_Site	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	20527576	71060618	64474129	126	65107										
PTEN	0	genome.wustl.edu	37	chr10	89725058	89725058	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctctaggtgaagctgtacttCacaaaaacagtagaggagcc	10	9	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	89725058	89725058	C	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.1041	p.F347L	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	60	0	0	68	13	16.05	-	-	-	A	89725058	C	A	89725058	3	1	737	1	0	0	0	0	1	0	0	0	12818	825	29	2	1075	2	PTEN	10	89725058	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	18664440	89725058	45809689	127	65108										
BTAF1	0	genome.wustl.edu	37	chr10	93716365	93716365	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	taatcagtctgcaaatgattCcaaagtcttgattgataata	6	6	3	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	93716365	93716365	C	A	SNP	BTAF1	ENST00000265990	human	ensembl	69_37n	1	known	missense	c.782	p.S261Y	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564	72	0	0	41	19	31.67	-	-	-	A	93716365	C	A	93716365	3	1	737	1	0	0	0	0	1	0	0	0	1544	855	30	2	808	2	BTAF1	10	93716365	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3991307	93716365	41818382	128	65109										
AS3MT	0	genome.wustl.edu	37	chr10	104629888	104629888	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcggcagacctccagaccaaCggctgtgtcaccacagccag	10	16	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	104629888	104629888	C	G	SNP	AS3MT	ENST00000369880	human	ensembl	69_37n	1	known	missense	c.90	p.N30K	0.957	NULL	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435	10	0	0	41	13	24.07	-	-	-	G	104629888	C	G	104629888	3	3	737	1	0	0	0	0	1	0	0	0	1009	535	19	3	100	3	AS3MT	10	104629888	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10913523	104629888	30904859	129	65110										
NHLRC2	0	genome.wustl.edu	37	chr10	115644027	115644027	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tagattgacctagaagctgaGaaggtgagcactgtagctgg	14	6	0	5			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	115644027	115644027	G	C	SNP	NHLRC2	ENST00000369301	human	ensembl	69_37n	1	known	missense	c.927	p.E309D	0.940	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	79	0	0	70	22	23.91	-	-	-	C	115644027	G	C	115644027	3	2	737	1	0	0	0	0	1	0	0	0	10478	933	33	2	945	2	NHLRC2	10	115644027	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	11014139	115644027	19890720	130	65111										
HSPA12A	0	genome.wustl.edu	37	chr10	118464780	118464780	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctgttctgagacgttggagtCagtgtcgttctgcagatata	12	7	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	118464780	118464780	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	missense	c.136	p.D46N	0.997	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	71	0	0	127	47	27.01	-	-	-	T	118464780	C	T	118464780	3	4	737	1	0	0	0	0	1	0	0	0	7457	826	29	2	1931	2	HSPA12A	10	118464780	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2820753	118464780	17069967	131	65112										
RAB11FIP2	0	genome.wustl.edu	37	chr10	119805431	119805431	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtgcataactataaggaaaaGaatgtatttctctggacttc	8	6	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	119805431	119805431	G	C	SNP	RAB11FIP2	ENST00000369199	human	ensembl	69_37n	-1	known	missense	c.244	p.L82V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560	73	0	0	47	20	29.41	-	-	-	C	119805431	G	C	119805431	3	2	737	1	0	0	0	0	1	0	0	0	12977	942	33	2	1314	2	RAB11FIP2	10	119805431	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1340651	119805431	15729316	132	65113										
EIF3A	0	genome.wustl.edu	37	chr10	120817696	120817696	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tcacgctgaatattcagactCtcaaggcgctcttttctctc	6	13	5	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	10	120817696	120817696	C	G	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.1749	p.E583D	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	63	0	0	101	43	29.86	-	-	-	G	120817696	C	G	120817696	3	3	737	1	0	0	0	0	1	0	0	0	5047	912	32	2	2443	2	EIF3A	10	120817696	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1012265	120817696	14717051	133	65114										
STIM1	0	genome.wustl.edu	37	chr11	4112909	4112909	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gaaacacacgcattccccacCtggctggcaagaaggctgtg	11	13	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	11	4112909	4112909	C	T	SNP	STIM1	ENST00000300737	human	ensembl	69_37n	1	known	silent	c.1939	p.L647	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323	25	0	0	59	21	26.25	-	-	-	T	4112909	C	T	4112909	2	4	737	1	0	0	0	0	0	0	0	1	15374	680	24	4		4	STIM1	11	4112909	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		4112909	130893607	134	65115										
NLRP10	0	genome.wustl.edu	37	chr11	7984895	7984895	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtccaccggaatcaggccctCcaactcccctctggccagtg	9	18	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	11	7984895	7984895	C	A	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	nonsense	c.148	p.E50*	0.814	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	35	0	0	39	16	29.09	-	-	-	A	7984895	C	A	7984895	4	1	737	1	0	0	0	0	0	1	0	0	10544	864	30	2	1827	2	NLRP10	11	7984895	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3871986	7984895	127021621	135	65116										
TMEM179B	0	genome.wustl.edu	37	chr11	62556503	62556503	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttctctccacagggctccttCagtggtagatgtcccctgta	9	13	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	11	62556503	62556503	C	G	SNP	TMEM179B	ENST00000333449	human	ensembl	69_37n	1	known	missense	c.105	p.F35L	0.892	NULL	NULL	-	no_errors	TMEM179B	HGNC	ENSG00000185475	48	0	0	64	26	28.89	-	-	-	G	62556503	C	G	62556503	3	3	737	1	0	0	0	0	1	0	0	0	16192	825	29	2	111	2	TMEM179B	11	62556503	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	54571608	62556503	72450013	136	65117										
ATG16L2	0	genome.wustl.edu	37	chr11	72533924	72533924	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ccctaggcgatgggatgaggGagagaagggagactctggct	18	7	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	11	72533924	72533924	G	T	SNP	ATG16L2	ENST00000321297	human	ensembl	69_37n	1	known	nonsense	c.742	p.E248*	0.069	NULL	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	36	0	0	24	9	27.27	-	-	-	T	72533924	G	T	72533924	4	4	737	1	0	0	0	0	0	1	0	0	1096	1175	41	2	768	2	ATG16L2	11	72533924	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	9977421	72533924	62472592	137	65118										
DYNC2H1	0	genome.wustl.edu	37	chr11	103306688	103306688	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagtgtcctctcgcatggcaGagcaagtgggaaggcccaga	14	11	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	11	103306688	103306688	G	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.12405	p.Q4135H	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	70	0	0	34	22	39.29	-	-	-	C	103306688	G	C	103306688	3	2	737	1	0	0	0	0	1	0	0	0	4881	933	33	2	12747	2	DYNC2H1	11	103306688	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	30772764	103306688	31699828	138	65119										
CHD4	0	genome.wustl.edu	37	chr12	6680152	6680152	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atggtagctgggagtcgagtCacatcagctttcatgtcact	11	9	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	6680152	6680152	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.5688	p.V1896	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	72	0	0	84	26	23.64	-	-	-	T	6680152	C	T	6680152	2	4	737	1	0	0	0	0	0	0	0	1	3356	813	29	2		2	CHD4	12	6680152	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		6680152	127171743	139	65120										
KLRK1	0	genome.wustl.edu	37	chr12	10531234	10531234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctctcataccagtttttactCtcatcaaaaaattggtagca	4	10	3	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	10531234	10531234	C	G	SNP	KLRK1	ENST00000240618	human	ensembl	69_37n	-1	known	missense	c.348	p.E116D	0.004	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRK1	HGNC	ENSG00000213809	85	0	0	74	19	20.21	-	-	-	G	10531234	C	G	10531234	3	3	737	1	0	0	0	0	1	0	0	0	8476	912	32	2	314	2	KLRK1	12	10531234	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3851082	10531234	123320661	140	65121										
C12orf36	0	genome.wustl.edu	37	chr12	13529258	13529258	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agtggagcatgaagtgtcttCatcaggaacacacagaaggt	12	7	3	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	13529258	13529258	C	T	SNP	C12orf36	ENST00000318426	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	0.002	NULL	NULL	-	no_errors	C12orf36	HGNC	ENSG00000180861	50	0	0	87	29	25	-	-	-	T	13529258	C	T	13529258	3	4	737	1	0	0	0	0	1	0	0	0	1695	835	29	2	342	2	C12orf36	12	13529258	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2998024	13529258	120322637	141	65122										
PLCZ1	0	genome.wustl.edu	37	chr12	18890331	18890331	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	catgacctgtagagccgtttCtcctcacttagaagtctttc	7	12	3	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	18890331	18890331	C	G	SNP	PLCZ1	ENST00000541109	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.321	-	-	-	no_errors	PLCZ1	HGNC	ENSG00000139151	64	0	0	50	29	36.71	-	-	-	G	18890331	C	G	18890331	1	3	737	0	1	0	0	0	0	0	0	0	12118	928	32	2		2	PLCZ1	12	18890331	RNA	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	5361073	18890331	114961564	142	65123										
LMBR1L	0	genome.wustl.edu	37	chr12	49491488	49491488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtcttcctagatgcctggggGaaaccggagacgggcagcgg	17	10	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	49491488	49491488	G	A	SNP	LMBR1L	ENST00000553040	human	ensembl	69_37n	-1	known	missense	c.524	p.S175F	0.605	NULL	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LMBR1L	HGNC	ENSG00000139636	54	0	0	133	28	17.39	-	-	-	A	49491488	G	A	49491488	3	1	737	1	0	0	0	0	1	0	0	0	8897	1165	41	2	36	2	LMBR1L	12	49491488	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	30601157	49491488	84360407	143	65124										
CBX5	0	genome.wustl.edu	37	chr12	54645846	54645846	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tctctcttttttttagatttGatgtcatcggcactgtttga	7	7	3	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	54645846	54645846	G	C	SNP	CBX5	ENST00000209875	human	ensembl	69_37n	-1	known	missense	c.303	p.I101M	1.000	NULL	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916	128	0	0	133	31	18.9	-	-	-	C	54645846	G	C	54645846	3	2	737	1	0	0	0	0	1	0	0	0	2746	1280	45	2	284	2	CBX5	12	54645846	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	5154358	54645846	79206049	144	65125										
TSPAN31	0	genome.wustl.edu	37	chr12	58139003	58139003	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctcaacgtggtctacatggtGaggttttggaggtgggggaa	17	5	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	12	58139003	58139003	G	A	SNP	TSPAN31	ENST00000548093	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TSPAN31	HGNC	ENSG00000135452	66	0	0	83	25	23.15	-	-	-	A	58139003	G	A	58139003	1	1	737	0	1	0	0	0	0	0	0	0	16742	1305	45	2		2	TSPAN31	12	58139003	RNA	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	3493157	58139003	75712892	145	65126										
COG6	0	genome.wustl.edu	37	chr13	40251714	40251714	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caagagaaggacccattactGaggtatcctggctttctgtt	10	9	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	13	40251714	40251714	G	A	SNP	COG6	ENST00000455146	human	ensembl	69_37n	1	known	missense	c.538	p.E180K	0.996	pfam_COG_su6	pfam_COG_su6	-	no_errors	COG6	HGNC	ENSG00000133103	37	0	0	24	9	27.27	-	-	-	A	40251714	G	A	40251714	3	1	737	1	0	0	0	0	1	0	0	0	3692	1291	45	2	556	2	COG6	13	40251714	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		40251714	74918164	146	65127										
MYO16	0	genome.wustl.edu	37	chr13	109707855	109707855	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ataatttttacgtgtctgctCagctacaatatattggggtc	8	7	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	13	109707855	109707855	C	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	nonsense	c.3181	p.Q1061*	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	84	0	0	91	26	22.22	-	-	-	T	109707855	C	T	109707855	4	4	737	1	0	0	0	0	0	1	0	0	10136	827	29	2	3283	2	MYO16	13	109707855	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	69456141	109707855	5462023	147	65128										
ING1	0	genome.wustl.edu	37	chr13	111371698	111371698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gcagccaggagctgggcgacGagaagatccagatcgtgagc	16	10	0	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	13	111371698	111371698	G	A	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	missense	c.688	p.E230K	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	13	0	0	33	10	23.26	-	-	-	A	111371698	G	A	111371698	3	1	737	1	0	0	0	0	1	0	0	0	7789	1059	37	1	842	1	ING1	13	111371698	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1663843	111371698	3798180	148	65129										
CDH24	0	genome.wustl.edu	37	chr14	23521790	23521790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctggatagagaagcaacgctCcggatctgagtgggggagga	17	7	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	14	23521790	23521790	C	T	SNP	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	missense	c.1255	p.E419K	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	26	0	0	59	13	18.06	-	-	-	T	23521790	C	T	23521790	3	4	737	1	0	0	0	0	1	0	0	0	3138	864	30	2	1228	2	CDH24	14	23521790	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		23521790	83827750	149	65130										
FBXO34	0	genome.wustl.edu	37	chr14	55818543	55818543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	actcctgtgaagacccagttCcagggatgttgttttttttg	10	8	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	14	55818543	55818543	C	T	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.1435	p.P479S	1.000	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	45	0	0	62	23	27.06	-	-	-	T	55818543	C	T	55818543	3	4	737	1	0	0	0	0	1	0	0	0	5790	855	30	2	1437	2	FBXO34	14	55818543	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	32296753	55818543	51530997	150	65131										
SEL1L	0	genome.wustl.edu	37	chr14	81969228	81969228	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttggagataccgatatgctCttcaaatgtaaacaattaaa	6	6	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	14	81969228	81969228	C	A	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	splice_site	c.615-1	e6-1	1.000	-	-	-	no_errors	SEL1L	HGNC	ENSG00000071537	81	0	0	89	35	28.23	-	-	-	A	81969228	C	A	81969228	5	1	737	1	0	0	0	0	0	0	1	0	14098	927	32	2	1834	2	SEL1L	14	81969228	Splice_Site	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	26150685	81969228	25380312	151	65132										
ATXN3	0	genome.wustl.edu	37	chr14	92563069	92563069	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	actcctccttctgccattctCatcctctcctcctcatccag	2	20	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	14	92563069	92563069	C	G	SNP	ATXN3	ENST00000545170	human	ensembl	69_37n	-1	known	missense	c.138	p.M46I	1.000	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427	108	0	0	98	30	23.44	-	-	-	G	92563069	C	G	92563069	3	3	737	1	0	0	0	0	1	0	0	0	1217	826	29	2	987	2	ATXN3	14	92563069	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10593841	92563069	14786471	152	65133										
SPTBN5	0	genome.wustl.edu	37	chr15	42173270	42173270	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	actctcatagtcctgactcaAgtggtcctgtgtctggagta	10	10	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	42173270	42173270	A	G	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	silent	c.2620	p.L874	0.112	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	23	0	0	56	24	30	-	-	-	G	42173270	A	G	42173270	2	3	737	1	0	0	0	0	0	0	0	1	15213	69	3	5		5	SPTBN5	15	42173270	Silent	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09		42173270	60358122	153	65134										
LCMT2	0	genome.wustl.edu	37	chr15	43622050	43622050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gctcatagaccacgaaaaggGcattaggaaaacgctgggct	12	9	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	43622050	43622050	G	T	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.638	p.A213D	0.756	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	15	0	0	19	5	20.83	-	-	-	T	43622050	G	T	43622050	3	4	737	1	0	0	0	0	1	0	0	0	8733	1203	42	4	1426	4	LCMT2	15	43622050	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1448780	43622050	58909342	154	65135										
FBN1	0	genome.wustl.edu	37	chr15	48717998	48717998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tacaaatgcaatgatatgatCctctgtcattgacacattcc	5	10	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	48717998	48717998	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.7268	p.G2423E	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	88	0	0	91	37	28.91	-	-	-	T	48717998	C	T	48717998	3	4	737	1	0	0	0	0	1	0	0	0	5748	855	30	2	1379	2	FBN1	15	48717998	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	5095948	48717998	53813394	155	65136										
TCF12	0	genome.wustl.edu	37	chr15	57524926	57524926	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctagagttatcctccacactCagtttcaccaacagacataa	4	13	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	57524926	57524926	C	G	SNP	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	nonsense	c.842	p.S281*	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	79	0	0	121	32	20.92	-	-	-	G	57524926	C	G	57524926	4	3	737	1	0	0	0	0	0	1	0	0	15782	838	29	2	953	2	TCF12	15	57524926	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	8806928	57524926	45006466	156	65137										
HERC1	0	genome.wustl.edu	37	chr15	63935169	63935169	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atattacctttgatctatttGagcaagcagctactccaact	5	10	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	63935169	63935169	G	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	nonsense	c.11420	p.S3807*	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	51	0	0	50	26	34.21	-	-	-	C	63935169	G	C	63935169	4	2	737	1	0	0	0	0	0	1	0	0	7108	1294	45	2	3245	2	HERC1	15	63935169	Nonsense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	6410243	63935169	38596223	157	65138										
DIS3L	0	genome.wustl.edu	37	chr15	66621447	66621447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ccggatcctgtgcggaggagGagttccatcattacggtgaa	14	9	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	66621447	66621447	G	A	SNP	DIS3L	ENST00000319212	human	ensembl	69_37n	1	known	missense	c.2341	p.E781K	0.994	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L	HGNC	ENSG00000166938	54	0	0	83	20	19.42	-	-	-	A	66621447	G	A	66621447	3	1	737	1	0	0	0	0	1	0	0	0	4572	1175	41	2	2391	2	DIS3L	15	66621447	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	2686278	66621447	35909945	158	65139										
LCTL	0	genome.wustl.edu	37	chr15	66845480	66845480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gttcctttccgtgatgtaccGagtagtaaaatgacctaatc	8	9	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	66845480	66845480	G	A	SNP	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	missense	c.1039	p.R347W	0.998	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	58	0	0	54	21	28	-	-	-	A	66845480	G	A	66845480	3	1	737	1	0	0	0	0	1	0	0	0	8748	1057	37	1	684	1	LCTL	15	66845480	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	224033	66845480	35685912	159	65140										
IREB2	0	genome.wustl.edu	37	chr15	78780591	78780591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtcgtctttgtgattgtgttCgtgccaattatcttgcctct	9	9	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	15	78780591	78780591	C	T	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.1864	p.R622C	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	139	1	0.71	162	46	22.12	-	-	-	T	78780591	C	T	78780591	3	4	737	1	0	0	0	0	1	0	0	0	7880	884	31	1	1922	1	IREB2	15	78780591	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	11935111	78780591	23750801	160	65141										
SRRM2	0	genome.wustl.edu	37	chr16	2815374	2815374	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agagcagcacccagggcacaGagtggttctgattcctctcc	11	13	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	2815374	2815374	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	silent	c.4845	p.Q1615	0.999	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	21	0	0	43	16	27.12	-	-	-	A	2815374	G	A	2815374	2	1	737	1	0	0	0	0	0	0	0	1	15260	933	33	2		2	SRRM2	16	2815374	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		2815374	87539379	161	65142										
FLYWCH1	0	genome.wustl.edu	37	chr16	2988210	2988210	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctccggcccctggagttcctGaggacttccctggggggcag	15	14	0	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	2988210	2988210	G	C	SNP	FLYWCH1	ENST00000344592	human	ensembl	69_37n	1	novel	missense	c.1135	p.E379Q	0.996	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FLYWCH1	HGNC	ENSG00000059122	13	0	0	19	7	25.93	-	-	-	C	2988210	G	C	2988210	3	2	737	1	0	0	0	0	1	0	0	0	5993	1277	45	2	1822	2	FLYWCH1	16	2988210	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	172836	2988210	87366543	162	65143										
XYLT1	0	genome.wustl.edu	37	chr16	17211800	17211800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cagaagacccccaaagttgcGgaatagcctctccttggcat	9	13	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	17211800	17211800	G	A	SNP	XYLT1	ENST00000261381	human	ensembl	69_37n	-1	known	missense	c.2260	p.R754C	1.000	pfam_XylT_met	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	28	0	0	69	22	24.18	-	-	-	A	17211800	G	A	17211800	3	1	737	1	0	0	0	0	1	0	0	0	17560	1116	39	1	627	1	XYLT1	16	17211800	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	14223590	17211800	73142953	163	65144										
NPIPL3	0	genome.wustl.edu	37	chr16	21415979	21415981	+	In_Frame_Del	DEL	ATT	ATT	-													0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cgctcggaaggtgtcttgagAttatcatccgctgagggtgg							TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	21415979	21415981	ATT	-	DEL	NPIPL3	ENST00000447737	human	ensembl	69_37n	-1	known	in_frame_del	c.912_910	p.N304in_frame_del	0.025:0.029:0.033	pfam_NPIP	pfam_NPIP	-	no_errors	NPIPL3	HGNC	ENSG00000169246	9	0	0	6	3	33.33	-	-	-	-	21415981	ATT	-	21415979	7	5	737	1	0	1	0	1	0	0	0	0	10657	330	12	0	2133	0	NPIPL3	16	21415979	In_Frame_Del	DEL	ATT	TCGA-D8-A27V-01A-12D-A17D-09	4204179	21415979	68938774	164	65145										
ZKSCAN2	0	genome.wustl.edu	37	chr16	25255208	25255208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agagtcttctattactgcctCctgtgaggtctcttcaggtt	9	10	4	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	25255208	25255208	C	T	SNP	ZKSCAN2	ENST00000328086	human	ensembl	69_37n	-1	known	missense	c.1879	p.E627K	0.996	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592	50	0	0	82	23	21.9	-	-	-	T	25255208	C	T	25255208	3	4	737	1	0	0	0	0	1	0	0	0	17783	864	30	2	1032	2	ZKSCAN2	16	25255208	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3839229	25255208	65099545	165	65146										
CLN3	0	genome.wustl.edu	37	chr16	28499967	28499967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agctgttgtgggggatcggcGttgggcctgggtccacctaa	17	9	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	28499967	28499967	G	A	SNP	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	missense	c.239	p.T80M	0.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	52	0	0	108	32	22.86	-	-	-	A	28499967	G	A	28499967	3	1	737	1	0	0	0	0	1	0	0	0	3573	1145	40	1	1125	1	CLN3	16	28499967	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	3244759	28499967	61854786	166	65147										
ITGAM	0	genome.wustl.edu	37	chr16	31340573	31340573	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggggtctccactaaatatctCaacttcacggcctcagagaa	8	12	4	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	31340573	31340573	C	G	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	silent	c.2820	p.L940	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	60	0	0	104	29	21.8	-	-	-	G	31340573	C	G	31340573	2	3	737	1	0	0	0	0	0	0	0	1	7941	813	29	2		2	ITGAM	16	31340573	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2840606	31340573	59014180	167	65148										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	16	0	0	11	4	26.67	-	-	-	T	68772218	C	T	68772218	4	4	737	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	37431645	68772218	21582535	168	65149										
CLEC18B	0	genome.wustl.edu	37	chr16	74451961	74451961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cctgcagcacactcacctgcGtgtagtgggtgcaggtggcg	15	12	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	16	74451961	74451961	G	A	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	missense	c.452	p.T151M	0.991	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	26	0	0	36	6	14.29	-	-	-	A	74451961	G	A	74451961	3	1	737	1	0	0	0	0	1	0	0	0	3533	1145	40	1	959	1	CLEC18B	16	74451961	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	5679743	74451961	15902792	169	65150										
VPS53	0	genome.wustl.edu	37	chr17	422463	422463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ggacagtgagccggagctttCtgcccccgagggcggtgcgg	18	12	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	422463	422463	C	T	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	missense	c.2404	p.E802K	1.000	NULL	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	27	0	0	47	14	22.95	-	-	-	T	422463	C	T	422463	3	4	737	1	0	0	0	0	1	0	0	0	17312	922	32	2	98	2	VPS53	17	422463	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		422463	80772747	170	65151										
PITPNA	0	genome.wustl.edu	37	chr17	1456444	1456444	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tacagctgccccacttgataCtaaaggacagagacagatgt	9	10	0	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	1456444	1456444	C	A	SNP	PITPNA	ENST00000313486	human	ensembl	69_37n	-1	known	splice_site	c.52-1	e3-1	1.000	-	-	-	no_errors	PITPNA	HGNC	ENSG00000174238	58	0	0	88	21	19.27	-	-	-	A	1456444	C	A	1456444	5	1	737	1	0	0	0	0	0	0	1	0	12021	579	20	4	797	4	PITPNA	17	1456444	Splice_Site	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	1033981	1456444	79738766	171	65152										
PFAS	0	genome.wustl.edu	37	chr17	8172309	8172309	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tctccggaactccaagctcaGattgaggccaggggcttggc	13	12	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	8172309	8172309	G	A	SNP	PFAS	ENST00000314666	human	ensembl	69_37n	1	known	silent	c.3744	p.Q1248	0.983	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_PurM_N-like,superfamily_AIR_synth_C,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921	24	0	0	22	16	42.11	-	-	-	A	8172309	G	A	8172309	2	1	737	1	0	0	0	0	0	0	0	1	11828	933	33	2		2	PFAS	17	8172309	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	6715865	8172309	73022901	172	65153										
MYH1	0	genome.wustl.edu	37	chr17	10411879	10411879	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttggcaggcttgggcttctgGaagttattggattttccaag	13	6	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	10411879	10411879	G	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.1698	p.F566	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	144	0	0	104	25	19.38	-	-	-	A	10411879	G	A	10411879	2	1	737	1	0	0	0	0	0	0	0	1	10101	1165	41	2		2	MYH1	17	10411879	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	2239570	10411879	70783331	173	65154										
CDRT1	0	genome.wustl.edu	37	chr17	15517307	15517307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttccagaaaacagcctattCatttcggatatacaccggag	7	10	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	15517307	15517307	C	T	SNP	CDRT1	ENST00000395906	human	ensembl	69_37n	-1	known	missense	c.711	p.M237I	0.143	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322	37	0	0	37	27	42.19	-	-	-	T	15517307	C	T	15517307	3	4	737	1	0	0	0	0	1	0	0	0	3203	826	29	2	1587	2	CDRT1	17	15517307	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	5105428	15517307	65677903	174	65155										
SLFN5	0	genome.wustl.edu	37	chr17	33591256	33591256	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cctctacaaggaactcttctCacaacataaaggactcagag	6	12	4	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	33591256	33591256	C	T	SNP	SLFN5	ENST00000299977	human	ensembl	69_37n	1	known	missense	c.1193	p.S398L	0.025	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN5	HGNC	ENSG00000166750	23	0	0	17	16	48.48	-	-	-	T	33591256	C	T	33591256	3	4	737	1	0	0	0	0	1	0	0	0	14826	838	29	2	1203	2	SLFN5	17	33591256	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	18073949	33591256	47603954	175	65156										
B4GALNT2	0	genome.wustl.edu	37	chr17	47219453	47219453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caaagagcagggaggttacaActttcaggatgcctatggcc	12	9	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	47219453	47219453	A	G	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	1	known	missense	c.452	p.N151S	0.001	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	34	0	0	76	15	16.48	-	-	-	G	47219453	A	G	47219453	3	3	737	1	0	0	0	0	1	0	0	0	1271	43	2	5	480	5	B4GALNT2	17	47219453	Missense_Mutation	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09	13628197	47219453	33975757	176	65157										
CLTC	0	genome.wustl.edu	37	chr17	57724970	57724970	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cttgcagggtgccagattatCaattaccgtacagatgcaaa	9	9	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	57724970	57724970	C	G	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	missense	c.462	p.I154M	1.000	pfam_Clathrin_H-chain_propeller_rpt,superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	83	0	0	121	80	39.8	-	-	-	G	57724970	C	G	57724970	3	3	737	1	0	0	0	0	1	0	0	0	3596	816	29	2	472	2	CLTC	17	57724970	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	10505517	57724970	23470240	177	65158										
CACNG5	0	genome.wustl.edu	37	chr17	64880746	64880746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acaagtatgggtggtcgtttGccttcgccgccatctccttc	10	13	1	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	17	64880746	64880746	G	T	SNP	CACNG5	ENST00000169565	human	ensembl	69_37n	1	known	missense	c.538	p.A180S	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429	57	0	0	42	25	37.31	-	-	-	T	64880746	G	T	64880746	3	4	737	1	0	0	0	0	1	0	0	0	2585	1319	46	4	552	4	CACNG5	17	64880746	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	7155776	64880746	16314464	178	65159										
ANKRD12	0	genome.wustl.edu	37	chr18	9280953	9280953	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aaatagacctgtcttttaatGaggcaacaacatgaagctgc	8	8	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	18	9280953	9280953	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.6018	p.M2006I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	59	0	0	41	20	32.79	-	-	-	A	9280953	G	A	9280953	3	1	737	1	0	0	0	0	1	0	0	0	640	1290	45	2	6064	2	ANKRD12	18	9280953	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		9280953	68796295	179	65160										
ASXL3	0	genome.wustl.edu	37	chr18	31322953	31322953	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	acatctgtcagtggcgggagGaacacaggagccaggaccct	14	11	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	18	31322953	31322953	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	silent	c.3141	p.R1047	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	34	0	0	50	17	25.37	-	-	-	A	31322953	G	A	31322953	2	1	737	1	0	0	0	0	0	0	0	1	1072	1165	41	2		2	ASXL3	18	31322953	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	22042000	31322953	46754295	180	65161										
ZNF407	0	genome.wustl.edu	37	chr18	72775896	72775896	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gcctctcaggagcgggcacaGgtggccttcaagaagatggt	15	10	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	18	72775896	72775896	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	silent	c.6219	p.Q2073	0.625	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	27	0	0	42	7	14.29	-	-	-	A	72775896	G	A	72775896	2	1	737	1	0	0	0	0	0	0	0	1	17983	991	35	4		4	ZNF407	18	72775896	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	41452943	72775896	5301352	181	65162										
AP3D1	0	genome.wustl.edu	37	chr19	2102199	2102199	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ttggccagcgtcgccttcatCtcttctaacaagttgctcag	8	13	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	2102199	2102199	C	T	SNP	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	silent	c.3621	p.E1207	1.000	pfam_BLV_receptor	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	25	0	0	60	10	14.29	-	-	-	T	2102199	C	T	2102199	2	4	737	1	0	0	0	0	0	0	0	1	747	912	32	2		2	AP3D1	19	2102199	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09		2102199	57026784	182	65163										
PLIN4	0	genome.wustl.edu	37	chr19	4513178	4513178	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agacggtgtccttggtacctGttaggacagtcttactggtg	13	8	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	4513178	4513178	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.752	p.T251I	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	47	0	0	58	29	33.33	-	-	-	A	4513178	G	A	4513178	3	1	737	1	0	0	0	0	1	0	0	0	12166	1377	48	4	3337	4	PLIN4	19	4513178	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	2410979	4513178	54615805	183	65164										
DHPS	0	genome.wustl.edu	37	chr19	12792434	12792434	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gcttggaagccggtggtgccGaaggcctccagcagtgcgcg	17	12	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	12792434	12792434	G	A	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	silent	c.147	p.F49	0.838	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	36	0	0	55	28	33.73	-	-	-	A	12792434	G	A	12792434	2	1	737	1	0	0	0	0	0	0	0	1	4521	1049	37	1		1	DHPS	19	12792434	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	8279256	12792434	46336549	184	65165										
NWD1	0	genome.wustl.edu	37	chr19	16872911	16872911	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtaccaagaagctcatcactCtgccacttgtggggaaacca	9	12	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	16872911	16872911	C	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	silent	c.2095	p.L699	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	18	0	0	34	13	27.66	-	-	-	T	16872911	C	T	16872911	2	4	737	1	0	0	0	0	0	0	0	1	10854	912	32	2		2	NWD1	19	16872911	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	4080477	16872911	42256072	185	65166										
UNC13A	0	genome.wustl.edu	37	chr19	17760359	17760359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	aggtttcctcttgcggatgtCtggcatgctgtcgatgatga	13	8	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	17760359	17760359	C	G	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.1741	p.D581H	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	61	0	0	166	37	18.23	-	-	-	G	17760359	C	G	17760359	3	3	737	1	0	0	0	0	1	0	0	0	17081	913	32	2	3754	2	UNC13A	19	17760359	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	887448	17760359	41368624	186	65167										
RFXANK	0	genome.wustl.edu	37	chr19	19309501	19309501	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctgctgtacgctgtgcgcggGaaccacgtgaaatgcgttga	14	10	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	19309501	19309501	G	A	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	silent	c.600	p.G200	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	30	0	0	59	12	16.9	-	-	-	A	19309501	G	A	19309501	2	1	737	1	0	0	0	0	0	0	0	1	13352	1161	41	2		2	RFXANK	19	19309501	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	1549142	19309501	39819482	187	65168										
ZNF429	0	genome.wustl.edu	37	chr19	21719580	21719580	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caaagcatttaaccactactCaacccttactaaccataaga	2	13	1	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	21719580	21719580	C	T	SNP	ZNF429	ENST00000358491	human	ensembl	69_37n	1	known	missense	c.725	p.S242L	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013	27	0	0	32	10	23.81	-	-	-	T	21719580	C	T	21719580	3	4	737	1	0	0	0	0	1	0	0	0	17998	838	29	2	739	2	ZNF429	19	21719580	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2410079	21719580	37409403	188	65169										
ZNF681	0	genome.wustl.edu	37	chr19	23928058	23928058	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tttccatatcttcttggtgtCactttttggaaagaatcttt	6	7	4	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	23928058	23928058	C	T	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	silent	c.294	p.V98	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	67	0	0	66	15	18.52	-	-	-	T	23928058	C	T	23928058	2	4	737	1	0	0	0	0	0	0	0	1	18184	813	29	2		2	ZNF681	19	23928058	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	2208478	23928058	35200925	189	65170										
ZNF254	0	genome.wustl.edu	37	chr19	24310394	24310394	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caaagcctttaactggtcctCaactcttactaaacataaga	4	11	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	24310394	24310394	C	T	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	1	known	missense	c.1592	p.S531L	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	31	0	0	26	10	27.78	-	-	-	T	24310394	C	T	24310394	3	4	737	1	0	0	0	0	1	0	0	0	17894	838	29	2	1606	2	ZNF254	19	24310394	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	382336	24310394	34818589	190	65171										
ZNF536	0	genome.wustl.edu	37	chr19	31039782	31039782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tggcccaaggtcagctcaagGagactctgggagagcagaag	15	9	3	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	31039782	31039782	G	C	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.3256	p.E1086Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	39	0	0	53	28	34.57	-	-	-	C	31039782	G	C	31039782	3	2	737	1	0	0	0	0	1	0	0	0	18070	1175	41	2	3266	2	ZNF536	19	31039782	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	6729388	31039782	28089201	191	65172										
MLL4	0	genome.wustl.edu	37	chr19	36220993	36220993	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caggatgacaagaaagtcttCtgccagaaacacactgatct	8	10	3	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	36220993	36220993	C	A	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	missense	c.5043	p.F1681L	0.989	pirsf_MeTrfase_trithorax,smart_Znf_PHD	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	31	0	0	82	21	20.19	-	-	-	A	36220993	C	A	36220993	3	1	737	1	0	0	0	0	1	0	0	0	9694	912	32	2	5133	2	MLL4	19	36220993	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	5181211	36220993	22907990	192	65173										
ZNF114	0	genome.wustl.edu	37	chr19	48785718	48785718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agaggaatctctacagagacGtgatgctggaaaattctagg	12	6	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	48785718	48785718	G	A	SNP	ZNF114	ENST00000315849	human	ensembl	69_37n	1	known	missense	c.100	p.V34M	0.670	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	25	0	0	59	19	24.36	-	-	-	A	48785718	G	A	48785718	3	1	737	1	0	0	0	0	1	0	0	0	17812	1145	40	1	106	1	ZNF114	19	48785718	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	12564725	48785718	10343265	193	65174										
ZNF583	0	genome.wustl.edu	37	chr19	56925397	56925397	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gggaatggctgaaccctgctCagaggaatttgtacaggaaa	13	7	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	19	56925397	56925397	C	T	SNP	ZNF583	ENST00000291598	human	ensembl	69_37n	1	known	nonsense	c.79	p.Q27*	0.919	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440	78	0	0	105	32	23.36	-	-	-	T	56925397	C	T	56925397	4	4	737	1	0	0	0	0	0	1	0	0	18111	827	29	2	85	2	ZNF583	19	56925397	Nonsense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	8139679	56925397	2203586	194	65175										
SLC23A2	0	genome.wustl.edu	37	chr20	4843515	4843515	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atcatgcccagagcgagcatGagggctgctccgcactgtat	12	12	1	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	20	4843515	4843515	G	A	SNP	SLC23A2	ENST00000423430	human	ensembl	69_37n	-1	known	missense	c.664	p.H222Y	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC23A2	HGNC	ENSG00000089057	17	0	0	27	16	37.21	-	-	-	A	4843515	G	A	4843515	3	1	737	1	0	0	0	0	1	0	0	0	14552	1277	45	2	573	2	SLC23A2	20	4843515	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		4843515	58182005	195	65176										
MACROD2	0	genome.wustl.edu	37	chr20	14066298	14066298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	caggaaacatcccaggtgaaGaaaagtttgactgaaaaagt	10	6	0	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	20	14066298	14066298	G	C	SNP	MACROD2	ENST00000310348	human	ensembl	69_37n	1	known	missense	c.195	p.K65N	1.000	pfscan_A1pp	pfam_A1pp,smart_A1pp,pfscan_A1pp	-	no_errors	MACROD2	HGNC	ENSG00000172264	58	0	0	58	17	22.67	-	-	-	C	14066298	G	C	14066298	3	2	737	1	0	0	0	0	1	0	0	0	9213	933	33	2	205	2	MACROD2	20	14066298	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	9222783	14066298	48959222	196	65177										
EMILIN3	0	genome.wustl.edu	37	chr20	39993715	39993715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gggcccccatctacactgccGgtattcagcctttacgtagc	9	15	2	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	20	39993715	39993715	G	A	SNP	EMILIN3	ENST00000332312	human	ensembl	69_37n	-1	known	missense	c.250	p.R84W	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798	42	0	0	101	29	22.31	-	-	-	A	39993715	G	A	39993715	3	1	737	1	0	0	0	0	1	0	0	0	5132	1115	39	1	2062	1	EMILIN3	20	39993715	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	25927417	39993715	23031805	197	65178										
KRTAP6-1	0	genome.wustl.edu	37	chr21	31986143	31986143	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tagccacagcccaggcctccAtagccatagcccaggcctcc	8	19	0	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	21	31986143	31986143	A	G	SNP	KRTAP6-1	ENST00000329122	human	ensembl	69_37n	-1	known	silent	c.81	p.Y27	0.881	NULL	NULL	-	no_errors	KRTAP6-1	HGNC	ENSG00000184724	114	0	0	139	51	26.7	-	-	-	G	31986143	A	G	31986143	2	3	737	1	0	0	0	0	0	0	0	1	8623	224	8	5		5	KRTAP6-1	21	31986143	Silent	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09		31986143	16143752	198	65179										
KCNJ15	0	genome.wustl.edu	37	chr21	39671692	39671692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cttcctggccaaaatcgccaGacccaaaaagcgggctgaga	10	13	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	21	39671692	39671692	G	C	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.509	p.R170T	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	20	0	0	22	7	24.14	-	-	-	C	39671692	G	C	39671692	3	2	737	1	0	0	0	0	1	0	0	0	8103	942	33	2	511	2	KCNJ15	21	39671692	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	7685549	39671692	8458203	199	65180										
PRMT2	0	genome.wustl.edu	37	chr21	48068499	48068499	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtgggactgggatcatcagtCtcttctgtgcacactatgcg	12	10	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	21	48068499	48068499	C	G	SNP	PRMT2	ENST00000355680	human	ensembl	69_37n	1	known	missense	c.457	p.L153V	1.000	pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	44	0	0	102	33	24.44	-	-	-	G	48068499	C	G	48068499	3	3	737	1	0	0	0	0	1	0	0	0	12618	913	32	2	471	2	PRMT2	21	48068499	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	8396807	48068499	61396	200	65181										
KDELR3	0	genome.wustl.edu	37	chr22	38875754	38875754	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	actacagtttcactctgctgGaggtaagggaatggactgag	13	7	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	22	38875754	38875754	G	C	SNP	KDELR3	ENST00000409006	human	ensembl	69_37n	1	known	missense	c.349	p.E117Q	1.000	pfam_ER_ret_rcpt,superfamily_Cyt_c_oxidase_su2-like_TM_dom	pfam_ER_ret_rcpt,superfamily_Cyt_c_oxidase_su2-like_TM_dom,prints_ER_ret_rcpt	-	no_errors	KDELR3	HGNC	ENSG00000100196	65	0	0	44	14	24.14	-	-	-	C	38875754	G	C	38875754	3	2	737	1	0	0	0	0	1	0	0	0	8175	1175	41	2	359	2	KDELR3	22	38875754	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		38875754	12428812	201	65182										
ACO2	0	genome.wustl.edu	37	chr22	41923997	41923997	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	ctgtggacaagctgaccattCagggcctgaaggacttcacc	11	12	2	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	22	41923997	41923997	C	G	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	1	known	missense	c.2179	p.Q727E	1.000	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	22	0	0	29	8	21.62	-	-	-	G	41923997	C	G	41923997	3	3	737	1	0	0	0	0	1	0	0	0	147	827	29	2	2245	2	ACO2	22	41923997	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	3048243	41923997	9380569	202	65183										
SULT4A1	0	genome.wustl.edu	37	chr22	44235893	44235893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gtggctcttgatgaggcgggGagaggtcagttcctgcgtgg	19	7	2	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	22	44235893	44235893	G	A	SNP	SULT4A1	ENST00000330884	human	ensembl	69_37n	-1	known	missense	c.313	p.P105S	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT4A1	HGNC	ENSG00000130540	69	0	0	172	65	27.43	-	-	-	A	44235893	G	A	44235893	3	1	737	1	0	0	0	0	1	0	0	0	15474	1174	41	2	561	2	SULT4A1	22	44235893	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	2311896	44235893	7068673	203	65184										
PNPLA3	0	genome.wustl.edu	37	chr22	44328905	44328905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	tggacatcaccaagctcagtCtacgcctctgcacagggaac	9	14	4	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	22	44328905	44328905	C	G	SNP	PNPLA3	ENST00000216180	human	ensembl	69_37n	1	known	missense	c.634	p.L212V	0.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	44	0	0	68	33	32.67	-	-	-	G	44328905	C	G	44328905	3	3	737	1	0	0	0	0	1	0	0	0	12240	912	32	2	648	2	PNPLA3	22	44328905	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	93012	44328905	6975661	204	65185										
VCX3B	0	genome.wustl.edu	37	chrX	8434064	8434064	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	gaagaaccactgagtcaggaGagccaggtggaggaaccact	14	9	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	8434064	8434064	G	A	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	1	known	silent	c.381	p.E127	0.001	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	21	0	0	11	5	31.25	-	-	-	A	8434064	G	A	8434064	2	1	737	1	0	0	0	0	0	0	0	1	17242	933	33	2		2	VCX3B	23	8434064	Silent	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09		8434064	146836496	205	65186										
DDX3X	0	genome.wustl.edu	37	chrX	41205487	41205487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atttttcaacgacaggcaagGattcactgaccttagtgttt	8	8	2	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	41205487	41205487	G	C	SNP	DDX3X	ENST00000399959	human	ensembl	69_37n	1	known	missense	c.1321	p.D441H	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	74	0	0	75	15	16.67	-	-	-	C	41205487	G	C	41205487	3	2	737	1	0	0	0	0	1	0	0	0	4389	1174	41	2	1371	2	DDX3X	23	41205487	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	32771423	41205487	114065073	206	65187										
CACNA1F	0	genome.wustl.edu	37	chrX	49065766	49065766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	atcttcctcctccactccctCctgcccctcttcttcctcct	1	23	3	0			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	49065766	49065766	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.4942	p.E1648K	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	82	0	0	94	42	30.88	-	-	-	T	49065766	C	T	49065766	3	4	737	1	0	0	0	0	1	0	0	0	2568	864	30	2	1019	2	CACNA1F	23	49065766	Missense_Mutation	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	7860279	49065766	106204794	207	65188										
DOCK11	0	genome.wustl.edu	37	chrX	117739287	117739287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cgagttctcacaaatatgacCcatgaagatgacgttcctat	7	10	1	4			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	117739287	117739287	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.2649	p.T883	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	76	0	0	56	29	34.12	-	-	-	T	117739287	C	T	117739287	2	4	737	1	0	0	0	0	0	0	0	1	4721	610	22	4		4	DOCK11	23	117739287	Silent	SNP	C	TCGA-D8-A27V-01A-12D-A17D-09	68673521	117739287	37531273	208	65189										
ATP11C	0	genome.wustl.edu	37	chrX	138810984	138810984	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	attgtgaactctagacatgaGagtggtttagtgtgttgcgt	13	4	1	3			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	138810984	138810984	G	A	SNP	ATP11C	ENST00000460773	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.973	-	-	-	no_errors	ATP11C	HGNC	ENSG00000101974	140	0	0	108	54	33.33	-	-	-	A	138810984	G	A	138810984	1	1	737	0	1	0	0	0	0	0	0	0	1125	957	33	2		2	ATP11C	23	138810984	RNA	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	21071697	138810984	16459576	209	65190										
ATP2B3	0	genome.wustl.edu	37	chrX	152821798	152821798	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	cccctccccagatagaacagGagcggctggacaaggtgtgg	14	12	0	2			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	152821798	152821798	G	C	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.2248	p.E750Q	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	19	0	0	42	13	23.64	-	-	-	C	152821798	G	C	152821798	3	2	737	1	0	0	0	0	1	0	0	0	1145	1175	41	2	2298	2	ATP2B3	23	152821798	Missense_Mutation	SNP	G	TCGA-D8-A27V-01A-12D-A17D-09	14010814	152821798	2448762	210	65191										
RPL10	0	genome.wustl.edu	37	chrX	153626649	153626649	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.54066985645933	113	1.4898067488086e-42	3.99813428153106	5.28124192576005	3.18270138613319	0.796710603336395	1	85	agagcgtccacccgtcttcgAcaggactctatggttcttac	9	13	3	1			TCGA-D8-A27V-01A-12D-A17D-09	TCGA-D8-A27V-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43c3976e-2cda-446a-b2fc-06fe4a479670	60f8560f-d97c-4ed2-a52a-161dba0d07d2	X	153626649	153626649	A	C	SNP	RPL10	ENST00000479366	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL10	HGNC	ENSG00000147403	8	0	0	2	6	75	-	-	-	C	153626649	A	C	153626649	1	2	737	0	1	0	0	0	0	0	0	0	13640	290	10	5		5	RPL10	23	153626649	RNA	SNP	A	TCGA-D8-A27V-01A-12D-A17D-09	804851	153626649	1643911	211	65192										
ASAP2	0	genome.wustl.edu	37	chr2	9467980	9467980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	gctgaaggtcaacgaaatcaAgattaaaaagggagtagatt	11	4	2	3			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	2	9467980	9467980	A	G	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	missense	c.626	p.K209R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	119	0	0	112	13	10.4	-	-	-	G	9467980	A	G	9467980	3	3	738	1	0	0	0	0	1	0	0	0	1015	72	3	5	652	5	ASAP2	2	9467980	Missense_Mutation	SNP	A	TCGA-D8-A27W-01A-11D-A16D-09		9467980	233731393	1	65193										
PLSCR2	0	genome.wustl.edu	37	chr3	146171892	146171892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ttgtaaactttgttagacatGggtgccaggtctgagtaaca	11	6	1	2			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	146171892	146171892	G	A	SNP	PLSCR2	ENST00000336685	human	ensembl	69_37n	-1	known	missense	c.380	p.P127L	0.704	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746	84	0	0	67	15	18.29	-	-	-	A	146171892	G	A	146171892	3	1	738	1	0	0	0	0	1	0	0	0	12184	1348	47	4	306	4	PLSCR2	3	146171892	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09		146171892	51850538	2	65194										
KCNAB1	0	genome.wustl.edu	37	chr3	156249278	156249278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	aactcattgaaaaccttggtGccattcaggcaagtactgca	8	10	2	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	156249278	156249278	G	A	SNP	KCNAB1	ENST00000490337	human	ensembl	69_37n	1	known	missense	c.1162	p.A388T	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282	72	0	0	52	24	31.58	-	-	-	A	156249278	G	A	156249278	3	1	738	1	0	0	0	0	1	0	0	0	8063	1319	46	4	1683	4	KCNAB1	3	156249278	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	10077386	156249278	41773152	3	65195										
ZNF721	0	genome.wustl.edu	37	chr4	437075	437075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	aactattaaaggctttgccaCactcttcacatttgtaaggt	6	9	2	0			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	437075	437075	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.1181	p.C394Y	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	99	0	0	141	20	12.42	-	-	-	T	437075	C	T	437075	3	4	738	1	0	0	0	0	1	0	0	0	18218	478	17	4	1594	4	ZNF721	4	437075	Missense_Mutation	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09		437075	190717201	4	65196										
CCKAR	0	genome.wustl.edu	37	chr4	26491823	26491823	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	gcagaaaagcgtctcattttCgagcccgagttcacagggag	12	10	2	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	26491823	26491823	C	G	SNP	CCKAR	ENST00000295589	human	ensembl	69_37n	-1	known	missense	c.67	p.E23Q	0.649	pfam_CholecystokininA_recpt_N,prints_Cholcy_rcpt_A	pfam_7TM_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394	50	0	0	52	7	11.86	-	-	-	G	26491823	C	G	26491823	3	3	738	1	0	0	0	0	1	0	0	0	2907	893	31	3	1239	3	CCKAR	4	26491823	Missense_Mutation	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09	26054748	26491823	164662453	5	65197										
POU4F2	0	genome.wustl.edu	37	chr4	147561811	147561811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	cgccagagaagcgctcgctcGaagcctactttgccattcag	10	14	1	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	147561811	147561811	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.1081	p.E361K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	25	0	0	26	6	18.75	-	-	-	A	147561811	G	A	147561811	3	1	738	1	0	0	0	0	1	0	0	0	12352	1059	37	1	1087	1	POU4F2	4	147561811	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	121069988	147561811	43592465	6	65198										
KIF4B	0	genome.wustl.edu	37	chr5	154396151	154396151	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ggaacaaaatcatttttctgAgatagagacagagttacaag	9	5	2	3			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	154396151	154396151	A	G	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	1	known	missense	c.2732	p.E911G	0.772	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	62	0	0	45	20	30.77	-	-	-	G	154396151	A	G	154396151	3	3	738	1	0	0	0	0	1	0	0	0	8356	304	11	5	2734	5	KIF4B	5	154396151	Missense_Mutation	SNP	A	TCGA-D8-A27W-01A-11D-A16D-09		154396151	26519109	7	65199										
RASGEF1C	0	genome.wustl.edu	37	chr5	179563506	179563506	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	cagtttggggccgaacttccGgacccgggcctacgggcaag	15	13	0	0			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	179563506	179563506	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.310	p.R104W	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	14	0	0	17	7	29.17	-	-	-	A	179563506	G	A	179563506	3	1	738	1	0	0	0	0	1	0	0	0	13154	1115	39	1	1134	1	RASGEF1C	5	179563506	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	25167355	179563506	1351754	8	65200										
MYLK4	0	genome.wustl.edu	37	chr6	2689172	2689172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	tacgatgatcaaatggggccGgaggagccgggatgtcaact	15	8	2	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	2689172	2689172	G	A	SNP	MYLK4	ENST00000268446	human	ensembl	69_37n	-1	known	missense	c.254	p.P85L	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949	47	0	0	52	6	10.34	-	-	-	A	2689172	G	A	2689172	3	1	738	1	0	0	0	0	1	0	0	0	10131	1116	39	1	948	1	MYLK4	6	2689172	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09		2689172	168425895	9	65201										
LRRC16A	0	genome.wustl.edu	37	chr6	25450164	25450164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ctccatggagccatctgagcGcctggctagtctccaggcgc	12	15	2	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	25450164	25450164	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.410	p.R137H	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	37	0	0	32	16	33.33	-	-	-	A	25450164	G	A	25450164	3	1	738	1	0	0	0	0	1	0	0	0	9037	1087	38	1	432	1	LRRC16A	6	25450164	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	22760992	25450164	145664903	10	65202										
MDGA1	0	genome.wustl.edu	37	chr6	37620076	37620076	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	tggatgttctcactctctttGatcacgtcaggagtgatctg	10	9	5	2			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	37620076	37620076	G	C	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.1023	p.I341M	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	16	0	0	7	51	87.93	-	-	-	C	37620076	G	C	37620076	3	2	738	1	0	0	0	0	1	0	0	0	9477	1280	45	2	1888	2	MDGA1	6	37620076	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	12169912	37620076	133494991	11	65203										
CENPW	0	genome.wustl.edu	37	chr6	126669611	126669611	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ttatttttttccctcttacaGgtaattctaaagaagagcag	6	7	2	2			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	126669611	126669611	G	A	SNP	CENPW	ENST00000368325	human	ensembl	69_37n	1	known	splice_site	c.286-1	e3-1	1.000	-	-	-	no_errors	CENPW	HGNC	ENSG00000203760	79	0	0	29	14	32.56	-	-	-	A	126669611	G	A	126669611	5	1	738	1	0	0	0	0	0	0	1	0	3273	1014	35	4	250	4	CENPW	6	126669611	Splice_Site	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09	89049535	126669611	44445456	12	65204										
RPA3	0	genome.wustl.edu	37	chr7	7680043	7680043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	cctgggcaagtccatcatgtCcaccatgattatggtccaag	9	12	1	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	7	7680043	7680043	C	T	SNP	RPA3	ENST00000223129	human	ensembl	69_37n	-1	known	missense	c.7	p.D3N	1.000	superfamily_NA-bd_OB-fold-like	pfam_Rep_factor-A_3,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA3	HGNC	ENSG00000106399	33	0	0	16	6	27.27	-	-	-	T	7680043	C	T	7680043	3	4	738	1	0	0	0	0	1	0	0	0	13624	855	30	2	374	2	RPA3	7	7680043	Missense_Mutation	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09		7680043	151458620	13	65205										
AGTPBP1	0	genome.wustl.edu	37	chr9	88272487	88272487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	tctatgccggttatcatggcGgtgccaatctacataaattg	9	9	3	0			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	9	88272487	88272487	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	50	0	0	26	9	25.71	-	-	-	A	88272487	G	A	88272487	3	1	738	1	0	0	0	0	1	0	0	0	400	1116	39	1	2856	1	AGTPBP1	9	88272487	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09		88272487	52940944	14	65206										
SHANK2	0	genome.wustl.edu	37	chr11	70507831	70507831	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ccattattgtagcccgtcatCatcaccgcggccgctcctcc	7	18	3	0			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	11	70507831	70507831	C	G	SNP	SHANK2	ENST00000449833	human	ensembl	69_37n	-1	known	missense	c.42	p.M14I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK2	HGNC	ENSG00000162105	33	0	0	33	15	31.25	-	-	-	G	70507831	C	G	70507831	3	3	738	1	0	0	0	0	1	0	0	0	14354	826	29	2	3787	2	SHANK2	11	70507831	Missense_Mutation	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09		70507831	64498685	15	65207										
FBXO34	0	genome.wustl.edu	37	chr14	55817206	55817206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	tatgaaccaccaaaaggctgTaaatgatgaaacatgcaaag	8	7	0	3			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	14	55817206	55817206	T	C	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	1	known	missense	c.98	p.V33A	0.000	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	35	0	0	58	7	10.77	-	-	-	C	55817206	T	C	55817206	3	2	738	1	0	0	0	0	1	0	0	0	5790	1638	57	5	100	5	FBXO34	14	55817206	Missense_Mutation	SNP	T	TCGA-D8-A27W-01A-11D-A16D-09		55817206	51532334	16	65208										
SEMA6D	0	genome.wustl.edu	37	chr15	48052559	48052559	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ggcaatgaatcgcagcacagGctggactttcagctgatgtt	12	9	1	2			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	15	48052559	48052559	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	1	known	silent	c.168	p.R56	1.000	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	71	0	0	47	18	27.69	-	-	-	A	48052559	G	A	48052559	2	1	738	1	0	0	0	0	0	0	0	1	14130	1194	42	4		4	SEMA6D	15	48052559	Silent	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09		48052559	54478833	17	65209										
IGFBP4	0	genome.wustl.edu	37	chr17	38610201	38610201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	cccagggctcctgccagagcGagctgcaccgggcgctggag	16	15	0	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	17	38610201	38610201	G	A	SNP	IGFBP4	ENST00000269593	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-4	-	no_errors	IGFBP4	HGNC	ENSG00000141753	50	0	0	53	13	19.7	-	-	-	A	38610201	G	A	38610201	3	1	738	1	0	0	0	0	1	0	0	0	7635	1059	37	1	539	1	IGFBP4	17	38610201	Missense_Mutation	SNP	G	TCGA-D8-A27W-01A-11D-A16D-09		38610201	42585009	18	65210										
TSHZ2	0	genome.wustl.edu	37	chr20	51872712	51872712	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	tggctggccaacgtcaagtaCcagcttaggaaaacgggcgg	14	10	1	0			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	20	51872712	51872712	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	silent	c.2715	p.Y905	1.000	superfamily_Homeodomain-like,smart_Homeodomain	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	44	0	0	62	47	42.73	-	-	-	T	51872712	C	T	51872712	2	4	738	1	0	0	0	0	0	0	0	1	16720	518	18	4		4	TSHZ2	20	51872712	Silent	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09		51872712	11152808	19	65211										
KIAA2022	0	genome.wustl.edu	37	chrX	73960046	73960046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.953986987641084	0.842105263157895	4.7719298245614	0	0.333333333333333	0.930327025915261	0	ccttggagctggatttgtgaCgatacaactttttgtgtgtc	11	7	0	1			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	X	73960046	73960046	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.4346	p.R1449H	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	113	0	0	85	36	29.75	-	-	-	T	73960046	C	T	73960046	3	4	738	1	0	0	0	0	1	0	0	0	8321	536	19	1	212	1	KIAA2022	23	73960046	Missense_Mutation	SNP	C	TCGA-D8-A27W-01A-11D-A16D-09		73960046	81310514	20	65212										
DNAJC11	0	genome.wustl.edu	37	chr1	6695221	6695221	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	aaacccgcaatctgctccagAttcaagcagtaatatttcag	6	11	3	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	1	6695221	6695221	A	T	SNP	DNAJC11	ENST00000465508	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	DNAJC11	HGNC	ENSG00000007923	18	0	0	19	5	20.83	-	-	-	T	6695221	A	T	6695221	1	4	739	0	1	0	0	0	0	0	0	0	4665	348	12	5		5	DNAJC11	1	6695221	RNA	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09		6695221	242555400	1	65213										
ST7L	0	genome.wustl.edu	37	chr1	113083439	113083439	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	tccatggttctcagtgttttCatttttgggaatataattaa	7	5	2	0			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	1	113083439	113083439	C	T	SNP	ST7L	ENST00000498197	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	ST7L	HGNC	ENSG00000007341	31	0	0	38	7	15.56	-	-	-	T	113083439	C	T	113083439	1	4	739	0	1	0	0	0	0	0	0	0	15321	841	29	2		2	ST7L	1	113083439	RNA	SNP	C	TCGA-D8-A3Z5-01A-41D-A243-09	106388218	113083439	136167182	2	65214										
CAPN2	0	genome.wustl.edu	37	chr1	223962929	223962929	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ctgagcaaaaacattgagtcGctctcaaaggacacgaggcc	10	11	1	2			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	1	223962929	223962929	G	A	SNP	CAPN2	ENST00000463997	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CAPN2	HGNC	ENSG00000162909	37	0	0	44	5	10.2	-	-	-	A	223962929	G	A	223962929	1	1	739	0	1	0	0	0	0	0	0	0	2652	1102	38	1		1	CAPN2	1	223962929	RNA	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09	110879490	223962929	25287692	3	65215										
TLK1	0	genome.wustl.edu	37	chr2	171871410	171871410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	cagctcacgtatgtgaagatTtctgactctttccaaacgtt	7	10	3	3			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	2	171871410	171871410	T	G	SNP	TLK1	ENST00000431350	human	ensembl	69_37n	-1	known	missense	c.1285	p.N429H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK1	HGNC	ENSG00000198586	30	0	0	24	5	17.24	-	-	-	G	171871410	T	G	171871410	3	3	739	1	0	0	0	0	1	0	0	0	16038	1841	64	5	1051	5	TLK1	2	171871410	Missense_Mutation	SNP	T	TCGA-D8-A3Z5-01A-41D-A243-09		171871410	71327963	4	65216										
SPOCK3	0	genome.wustl.edu	37	chr4	168155291	168155292	+	Frame_Shift_Del	DEL	CA	CA	-													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ctgactgcaccaagcggctgCacacacacacagtacggctg							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	4	168155291	168155292	CA	-	DEL	SPOCK3	ENST00000357154	human	ensembl	69_37n	-1	known	frame_shift_del	c.34_33	p.A12fs	1.000:1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104	37	0	0	30	4	11.76	-	-	-	-	168155292	CA	-	168155291	7	5	739	1	0	1	0	1	0	0	0	0	15172	710	25	0	1320	0	SPOCK3	4	168155291	Frame_Shift_Del	DEL	CA	TCGA-D8-A3Z5-01A-41D-A243-09		168155291	22998985	5	65217										
NEDD9	0	genome.wustl.edu	37	chr6	11185522	11185522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ggagggcggccatcttggttGccatgactatggtcttgagc	15	9	2	2			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	6	11185522	11185522	G	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.2378	p.A793E	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	76	0	0	55	9	14.06	-	-	-	T	11185522	G	T	11185522	3	4	739	1	0	0	0	0	1	0	0	0	10385	1319	46	4	130	4	NEDD9	6	11185522	Missense_Mutation	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09		11185522	159929545	6	65218										
MTPAP	0	genome.wustl.edu	37	chr10	30653858	30653858	+	Silent	SNP	A	A	C													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	cccacgctcacacccaccccAcccccacccccacagaggtg							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	10	30653858	30653858	A	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.324	p.G108	0.008	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	65	0	0	30	16	34.78	-	-	-	C	30653858	A	C	30653858	2	2	739	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653858	Silent	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09		30653858	104880889	7	65219	475	2								
MTPAP	0	genome.wustl.edu	37	chr10	30653864	30653864	+	Silent	SNP	A	A	C													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ctcacacccaccccacccccAcccccacagaggtgctgcaa							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	10	30653864	30653864	A	C	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.318	p.G106	0.011	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	71	0	0	34	22	39.29	-	-	-	C	30653864	A	C	30653864	2	2	739	1	0	0	0	0	0	0	0	1	10028	174	6	5		5	MTPAP	10	30653864	Silent	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09	6	30653864	104880883	8	65220	475	2								
INTS4	0	genome.wustl.edu	37	chr11	77639511	77639511	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	tcatcgttgaacatgtcaacTaggaaatcaaggcacttctc	7	10	4	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	11	77639511	77639511	T	A	SNP	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	silent	c.1248	p.L416	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	117	0	0	80	11	12.09	-	-	-	A	77639511	T	A	77639511	2	1	739	1	0	0	0	0	0	0	0	1	7834	1509	53	5		5	INTS4	11	77639511	Silent	SNP	T	TCGA-D8-A3Z5-01A-41D-A243-09		77639511	57367005	9	65221										
DRD2	0	genome.wustl.edu	37	chr11	113281554	113281554	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	tagcccagccacgtgaaggcGctgtacaggacaggcgggat	15	11	0	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	11	113281554	113281554	G	A	SNP	DRD2	ENST00000355319	human	ensembl	69_37n	-1	known	silent	c.1233	p.S411	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	64	0	0	26	13	33.33	-	-	-	A	113281554	G	A	113281554	2	1	739	1	0	0	0	0	0	0	0	1	4792	1078	38	1		1	DRD2	11	113281554	Silent	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09	35642043	113281554	21724962	10	65222										
NAV3	0	genome.wustl.edu	37	chr12	78582467	78582467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ctagctactgtataggagacTtaattagatcccataaccta	6	9	0	2			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	12	78582467	78582467	T	C	SNP	NAV3	ENST00000552895	human	ensembl	69_37n	1	novel	missense	c.2582	p.L861P	0.994	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAV3	HGNC	ENSG00000067798	49	0	0	38	13	25.49	-	-	-	C	78582467	T	C	78582467	3	2	739	1	0	0	0	0	1	0	0	0	10257	1606	56	5	6025	5	NAV3	12	78582467	Missense_Mutation	SNP	T	TCGA-D8-A3Z5-01A-41D-A243-09		78582467	55269428	11	65223										
TBX3	0	genome.wustl.edu	37	chr12	115120619	115120620	+	Frame_Shift_Ins	INS	-	-	C													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	aggcccccactgcttaccttINScccgacttggtaatgaccat							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	12	115120619	115120620	-	C	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.387_386	p.R130fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	48	0	0	36	13	26.53	-	-	-	C	115120620	-	C	115120619	7	5	739	1	0	1	1	0	0	0	0	0	15754	1770	62	0	1876	0	TBX3	12	115120619	Frame_Shift_Ins	INS	-	TCGA-D8-A3Z5-01A-41D-A243-09	36538152	115120619	18731276	12	65224										
MAP4K5	0	genome.wustl.edu	37	chr14	50952848	50952848	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	taactcccaaagtaggcaacGatgttacaatgtttacattc	6	9	0	0			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	14	50952848	50952848	G	A	SNP	MAP4K5	ENST00000013125	human	ensembl	69_37n	-1	known	silent	c.231	p.I77	0.989	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983	44	0	0	33	8	19.05	-	-	-	A	50952848	G	A	50952848	2	1	739	1	0	0	0	0	0	0	0	1	9334	1048	37	1		1	MAP4K5	14	50952848	Silent	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09		50952848	56396692	13	65225										
TMEM63C	0	genome.wustl.edu	37	chr14	77706020	77706020	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	gaaggtgatgatcaggatccAcccctgtgcccgcctgtgct	12	13	1	2			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	14	77706020	77706020	A	C	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	missense	c.881	p.H294P	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	27	0	0	11	12	52.17	-	-	-	C	77706020	A	C	77706020	3	2	739	1	0	0	0	0	1	0	0	0	16287	159	6	5	919	5	TMEM63C	14	77706020	Missense_Mutation	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09	26753172	77706020	29643520	14	65226										
DYNC1H1	0	genome.wustl.edu	37	chr14	102508353	102508353	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	gccttctttgtttgcaggtgAagcccaacactcctgtctta	8	12	2	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	14	102508353	102508353	A	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	nonsense	c.12106	p.K4036*	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	47	0	0	40	6	13.04	-	-	-	T	102508353	A	T	102508353	4	4	739	1	0	0	0	0	0	1	0	0	4876	247	9	5	12368	5	DYNC1H1	14	102508353	Nonsense_Mutation	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09	24802333	102508353	4841187	15	65227										
CDH1	0	genome.wustl.edu	37	chr16	68863630	68863630	+	Frame_Shift_Del	DEL	C	C	-													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	tcgtaacgacgttgcaccaaCcctcatgagtgtcccccggt							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	16	68863630	68863630	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.2369	p.L791fs	0.956	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	67	0	0	36	10	21.28	-	-	-	-	68863630	C	-	68863630	7	5	739	1	0	1	0	1	0	0	0	0	3124	507	18	0	2427	0	CDH1	16	68863630	Frame_Shift_Del	DEL	C	TCGA-D8-A3Z5-01A-41D-A243-09		68863630	21491123	16	65228										
FTSJD1	0	genome.wustl.edu	37	chr16	71319817	71319818	+	Frame_Shift_Ins	INS	-	-	A													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	actggtgtctttctgcacttINSactcattttcaaatcaaatt							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	16	71319817	71319818	-	A	INS	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7_6	p.K2fs	1.000:0.997	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	28	0	0	12	3	20	-	-	-	A	71319818	-	A	71319817	7	5	739	1	0	1	1	0	0	0	0	0	6139	1763	61	0	2309	0	FTSJD1	16	71319817	Frame_Shift_Ins	INS	-	TCGA-D8-A3Z5-01A-41D-A243-09	2456187	71319817	19034936	17	65229										
FUT3	0	genome.wustl.edu	37	chr19	5844672	5844672	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	gcaggatcaggagggtggggCgggtgggagtggtgtcctgt	23	5	1	0			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	19	5844672	5844672	C	G	SNP	FUT3	ENST00000303225	human	ensembl	69_37n	-1	known	missense	c.179	p.R60P	0.005	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124	30	0	0	12	11	47.83	-	-	-	G	5844672	C	G	5844672	3	3	739	1	0	0	0	0	1	0	0	0	6154	768	27	3	910	3	FUT3	19	5844672	Missense_Mutation	SNP	C	TCGA-D8-A3Z5-01A-41D-A243-09		5844672	53284311	18	65230										
TPRX1	0	genome.wustl.edu	37	chr19	48305694	48305694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	tgggcctgggatcgggcctgAgattgggcctgggatcgggc	20	9	0	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	19	48305694	48305694	A	G	SNP	TPRX1	ENST00000535759	human	ensembl	69_37n	-1	known	missense	c.865	p.S289P	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	TPRX1	HGNC	ENSG00000178928	141	1	0.7	92	17	15.6	-	-	-	G	48305694	A	G	48305694	3	3	739	1	0	0	0	0	1	0	0	0	16518	304	11	5	665	5	TPRX1	19	48305694	Missense_Mutation	SNP	A	TCGA-D8-A3Z5-01A-41D-A243-09	42461022	48305694	10823289	19	65231										
KLK13	0	genome.wustl.edu	37	chr19	51568308	51568308	+	Frame_Shift_Del	DEL	A	A	-													0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	aggtcagggaggcgatcactAgggccaggggccacatggct							TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	19	51568308	51568308	A	-	DEL	KLK13	ENST00000156476	human	ensembl	69_37n	-1	known	frame_shift_del	c.17	p.L6fs	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	13	0	0	2	2	50	-	-	-	-	51568308	A	-	51568308	7	5	739	1	0	1	0	1	0	0	0	0	8454	420	15	0	836	0	KLK13	19	51568308	Frame_Shift_Del	DEL	A	TCGA-D8-A3Z5-01A-41D-A243-09	3262614	51568308	7560675	20	65232										
KIR2DL3	0	genome.wustl.edu	37	chr19	55263947	55263947	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	acagatatcatcgtgtacacGgaacttccaaatgctgagcc	8	11	1	2			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	19	55263947	55263947	G	T	SNP	KIR2DL3	ENST00000342376	human	ensembl	69_37n	1	known	silent	c.1002	p.T334	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772	26	0	0	24	18	42.86	-	-	-	T	55263947	G	T	55263947	2	4	739	1	0	0	0	0	0	0	0	1	8370	1103	39	3		3	KIR2DL3	19	55263947	Silent	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09	3695639	55263947	3865036	21	65233										
DHX35	0	genome.wustl.edu	37	chr20	37662882	37662882	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	gaagttatacagacctccaaGtactacatgagagatgtgac	9	8	0	4			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	20	37662882	37662882	G	A	SNP	DHX35	ENST00000252011	human	ensembl	69_37n	1	known	silent	c.1989	p.K663	1.000	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452	32	0	0	46	6	11.54	-	-	-	A	37662882	G	A	37662882	2	1	739	1	0	0	0	0	0	0	0	1	4544	1020	36	4		4	DHX35	20	37662882	Silent	SNP	G	TCGA-D8-A3Z5-01A-41D-A243-09		37662882	25362638	22	65234										
FAM118A	0	genome.wustl.edu	37	chr22	45736434	45736434	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ccacatgggcatgtggccctCaaggctgggtgagagggctc	16	11	1	1			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	22	45736434	45736434	C	G	SNP	FAM118A	ENST00000479180	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	FAM118A	HGNC	ENSG00000100376	66	0	0	44	6	12	-	-	-	G	45736434	C	G	45736434	1	3	739	0	1	0	0	0	0	0	0	0	5451	841	29	2		2	FAM118A	22	45736434	RNA	SNP	C	TCGA-D8-A3Z5-01A-41D-A243-09		45736434	5568132	23	65235										
CDKL5	0	genome.wustl.edu	37	chrX	18622482	18622482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0869565217391304	2	0.585758357762327	1.96666666666667	3.93333333333333	1.31111111111111	1	1	0	ttccccagtcctctaggagtCcctcctacaggaccaaggcc	8	17	1	0			TCGA-D8-A3Z5-01A-41D-A243-09	TCGA-D8-A3Z5-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96561a13-a52a-4cd1-b9a0-7a5eb56e7541	30f9b5a4-8975-4fef-a062-b6bbfca3133d	X	18622482	18622482	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	1	known	missense	c.1438	p.P480S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	18	0	0	18	5	21.74	-	-	-	T	18622482	C	T	18622482	3	4	739	1	0	0	0	0	1	0	0	0	3186	855	30	2	1480	2	CDKL5	23	18622482	Missense_Mutation	SNP	C	TCGA-D8-A3Z5-01A-41D-A243-09		18622482	136648078	24	65236										
HRNR	0	genome.wustl.edu	37	chr1	152186614	152186614	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gctccatgttggccacagctCgatgactgtcctgatgtaga	11	11	0	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	1	152186614	152186614	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.7491	p.S2497	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	9	0	0	4	5	55.56	-	-	-	G	152186614	C	G	152186614	2	3	740	1	0	0	0	0	0	0	0	1	7410	871	31	3		3	HRNR	1	152186614	Silent	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		152186614	97064007	1	65237										
F11R	0	genome.wustl.edu	37	chr1	160970906	160970908	+	In_Frame_Del	DEL	ACA	ACA	-													0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	aaagcccgagtaggcacaggAcaacttcacagctgcagaca							TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	1	160970906	160970908	ACA	-	DEL	F11R	ENST00000436182	human	ensembl	69_37n	-1	known	in_frame_del	c.157_155	p.L52in_frame_del	0.006:0.074:0.072	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	F11R	HGNC	ENSG00000158769	42	0	0	57	7	10.94	-	-	-	-	160970908	ACA	-	160970906	7	5	740	1	0	1	0	1	0	0	0	0	5375	275	10	0	786	0	F11R	1	160970906	In_Frame_Del	DEL	ACA	TCGA-D8-A3Z6-01A-11D-A23C-09	8784292	160970906	88279715	2	65238										
OR2T4	0	genome.wustl.edu	37	chr1	248524975	248524975	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	tccaaacatccaatggccaaTatcacctggatggccaacca	6	14	1	0			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	1	248524975	248524975	T	C	SNP	OR2T4	ENST00000366475	human	ensembl	69_37n	1	known	silent	c.93	p.N31	0.074	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944	65	0	0	65	14	17.72	-	-	-	C	248524975	T	C	248524975	2	2	740	1	0	0	0	0	0	0	0	1	11100	1403	49	5		5	OR2T4	1	248524975	Silent	SNP	T	TCGA-D8-A3Z6-01A-11D-A23C-09	87554069	248524975	725646	3	65239										
EPB41L5	0	genome.wustl.edu	37	chr2	120836080	120836080	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	ttaaattaggctagagatggGaatgactatagtttgggact	12	3	0	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	2	120836080	120836080	G	T	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	silent	c.726	p.G242	0.603	pfam_FERM_PH-like_C,pfscan_FERM_domain,prints_Ez/rad/moesin	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	29	0	0	29	4	12.12	-	-	-	T	120836080	G	T	120836080	2	4	740	1	0	0	0	0	0	0	0	1	5194	1161	41	2		2	EPB41L5	2	120836080	Silent	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		120836080	122363293	4	65240										
KBTBD5	0	genome.wustl.edu	37	chr3	42730496	42730496	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	atcgtggcagctggggtcacCgacacagggctgaccagttc	14	12	1	1			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	3	42730496	42730496	C	T	SNP	KBTBD5	ENST00000287777	human	ensembl	69_37n	1	known	silent	c.1557	p.T519	0.730	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD5	HGNC	ENSG00000157119	30	0	0	25	11	30.56	-	-	-	T	42730496	C	T	42730496	2	4	740	1	0	0	0	0	0	0	0	1	8050	639	23	1		1	KBTBD5	3	42730496	Silent	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		42730496	155291934	5	65241										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	21	0	0	11	7	38.89	-	-	-	G	178952085	A	G	178952085	3	3	740	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-D8-A3Z6-01A-11D-A23C-09	136221589	178952085	19070345	6	65242										
HTR3D	0	genome.wustl.edu	37	chr3	183753877	183753877	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	ctatggctttcagatgtcttCatcgaggagtcgtgagtctc	11	9	4	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	3	183753877	183753877	C	T	SNP	HTR3D	ENST00000382489	human	ensembl	69_37n	1	known	silent	c.369	p.F123	0.838	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	31	0	0	21	4	16	-	-	-	T	183753877	C	T	183753877	2	4	740	1	0	0	0	0	0	0	0	1	7501	825	29	2		2	HTR3D	3	183753877	Silent	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09	4801792	183753877	14268553	7	65243										
LRRC14B	0	genome.wustl.edu	37	chr5	191707	191707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gcagaagctctggtgtcccaCccccaggtggcccggcagag	14	15	1	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	5	191707	191707	C	A	SNP	LRRC14B	ENST00000328278	human	ensembl	69_37n	1	novel	missense	c.54	p.H18Q	0.122	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	58	0	0	43	19	30.65	-	-	-	A	191707	C	A	191707	3	1	740	1	0	0	0	0	1	0	0	0	9035	506	18	4	56	4	LRRC14B	5	191707	Missense_Mutation	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		191707	180723553	8	65244										
TERT	0	genome.wustl.edu	37	chr5	1266600	1266600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	tgaggaaggttttcgcgtggGtgaggtgaggtgtcaccaac	17	6	1	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	5	1266600	1266600	G	T	SNP	TERT	ENST00000310581	human	ensembl	69_37n	-1	known	missense	c.2633	p.T878N	0.000	pfam_RVT,pfscan_RVT	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,prints_Telomerase_RT,pfscan_RVT	-	no_errors	TERT	HGNC	ENSG00000164362	48	0	0	29	6	17.14	-	-	-	T	1266600	G	T	1266600	3	4	740	1	0	0	0	0	1	0	0	0	15859	1261	44	4	793	4	TERT	5	1266600	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09	1074893	1266600	179648660	9	65245										
MAP3K1	0	genome.wustl.edu	37	chr5	56161268	56161269	+	Frame_Shift_Del	DEL	TT	TT	-													0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	ccaatgttatggagaaaaacTttaaagaattttgaggtagt							TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	5	56161268	56161269	TT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1137_1138	p.L380fs	0.761:0.988	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	62	0	0	48	21	30.43	-	-	-	-	56161269	TT	-	56161268	7	5	740	1	0	1	0	1	0	0	0	0	9314	1596	56	0	1155	0	MAP3K1	5	56161268	Frame_Shift_Del	DEL	TT	TCGA-D8-A3Z6-01A-11D-A23C-09	54894668	56161268	124753992	10	65246										
PCDHGA8	0	genome.wustl.edu	37	chr5	140773952	140773952	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	caatctttcgactatgagcaGatccgagacctgcagctact	8	12	1	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	5	140773952	140773952	G	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	69_37n	1	known	missense	c.1572	p.Q524H	0.964	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	39	0	0	31	20	39.22	-	-	-	T	140773952	G	T	140773952	3	4	740	1	0	0	0	0	1	0	0	0	11633	933	33	2	1574	2	PCDHGA8	5	140773952	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09	84612684	140773952	40141308	11	65247										
HIST1H4J	0	genome.wustl.edu	37	chr6	27791945	27791945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	ggaagggtcttggcaaaggcGgcgctaagcgccaccgtaaa	15	10	1	0			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	6	27791945	27791945	G	A	SNP	HIST1H4J	ENST00000355057	human	ensembl	69_37n	1	known	missense	c.43	p.G15S	1.000	superfamily_Histone-fold,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4J	HGNC	ENSG00000197238	34	0	0	20	8	28.57	-	-	-	A	27791945	G	A	27791945	3	1	740	1	0	0	0	0	1	0	0	0	7225	1116	39	1	45	1	HIST1H4J	6	27791945	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		27791945	143323122	12	65248										
GPAM	0	genome.wustl.edu	37	chr10	113923490	113923490	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	tgctcagccagatttgcaatCaacctccttcgtagggattc	8	12	2	1			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	10	113923490	113923490	C	T	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	silent	c.1392	p.L464	0.996	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	79	0	0	50	35	41.18	-	-	-	T	113923490	C	T	113923490	2	4	740	1	0	0	0	0	0	0	0	1	6638	825	29	2		2	GPAM	10	113923490	Silent	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		113923490	21611257	13	65249										
RASSF7	0	genome.wustl.edu	37	chr11	563307	563307	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	acggcctgacaggggccctcCtggcactcaggtcggagtgg	16	13	1	1			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	11	563307	563307	C	G	SNP	RASSF7	ENST00000344375	human	ensembl	69_37n	1	known	missense	c.941	p.P314R	0.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF7	HGNC	ENSG00000099849	38	0	0	20	7	25.93	-	-	-	G	563307	C	G	563307	3	3	740	1	0	0	0	0	1	0	0	0	13174	681	24	4	951	4	RASSF7	11	563307	Missense_Mutation	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		563307	134443209	14	65250										
ST5	0	genome.wustl.edu	37	chr11	8752457	8752457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gggggaggcaggcagcgaccCctgctacatcctgggctgcg	17	13	0	0			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	11	8752457	8752457	C	T	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	missense	c.380	p.G127E	0.339	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	44	0	0	32	7	17.95	-	-	-	T	8752457	C	T	8752457	3	4	740	1	0	0	0	0	1	0	0	0	15311	623	22	4	3105	4	ST5	11	8752457	Missense_Mutation	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09	8189150	8752457	126254059	15	65251										
SLC43A3	0	genome.wustl.edu	37	chr11	57182167	57182167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	cagggggcacacagcactccGaactgagtgaaggcaaaggc	14	11	0	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	11	57182167	57182167	G	A	SNP	SLC43A3	ENST00000525205	human	ensembl	69_37n	-1	known	missense	c.293	p.S98L	0.998	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC43A3	HGNC	ENSG00000134802	47	0	0	33	13	28.26	-	-	-	A	57182167	G	A	57182167	3	1	740	1	0	0	0	0	1	0	0	0	14723	1049	37	1	510	1	SLC43A3	11	57182167	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09	48429710	57182167	77824349	16	65252										
PHLDB1	0	genome.wustl.edu	37	chr11	118499208	118499208	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	cttcaccctgccagagtcccTgtgtccagaggaagctctcc	9	16	2	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	11	118499208	118499208	T	C	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.1669	p.C557R	0.996	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	52	0	0	44	6	12	-	-	-	C	118499208	T	C	118499208	3	2	740	1	0	0	0	0	1	0	0	0	11925	1580	55	5	1687	5	PHLDB1	11	118499208	Missense_Mutation	SNP	T	TCGA-D8-A3Z6-01A-11D-A23C-09	61317041	118499208	16507308	17	65253										
SCYL2	0	genome.wustl.edu	37	chr12	100711639	100711639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	aaccaaaacccctcctgatgAgataaagaacagtgttctac	6	11	1	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	12	100711639	100711639	A	G	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.1331	p.E444G	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	40	0	0	26	19	42.22	-	-	-	G	100711639	A	G	100711639	3	3	740	1	0	0	0	0	1	0	0	0	14036	304	11	5	1365	5	SCYL2	12	100711639	Missense_Mutation	SNP	A	TCGA-D8-A3Z6-01A-11D-A23C-09		100711639	33140256	18	65254										
RNF31	0	genome.wustl.edu	37	chr14	24620062	24620062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	agcagcgccaagacaagatgCgggaagaaggcctccagcta	13	11	0	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	14	24620062	24620062	C	T	SNP	RNF31	ENST00000324103	human	ensembl	69_37n	1	known	missense	c.1453	p.R485W	1.000	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098	63	0	0	40	27	40.3	-	-	-	T	24620062	C	T	24620062	3	4	740	1	0	0	0	0	1	0	0	0	13573	759	27	1	1483	1	RNF31	14	24620062	Missense_Mutation	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09		24620062	82729478	19	65255										
AHNAK2	0	genome.wustl.edu	37	chr14	105420425	105420425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	cccgatttccaggctctgcaGtccctcgccttcaccctccc	6	21	2	0			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	14	105420425	105420425	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.1363	p.L455M	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	58	0	0	31	20	39.22	-	-	-	T	105420425	G	T	105420425	3	4	740	1	0	0	0	0	1	0	0	0	415	1020	36	4	16028	4	AHNAK2	14	105420425	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09	80800363	105420425	1929115	20	65256										
TXNDC11	0	genome.wustl.edu	37	chr16	11792024	11792024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	cggccaggggattaaaaggtAtgaacagaaacagcgctggt	14	7	0	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	16	11792024	11792024	A	C	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.1145	p.I382R	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	36	0	0	43	5	10.42	-	-	-	C	11792024	A	C	11792024	3	2	740	1	0	0	0	0	1	0	0	0	16889	449	16	5	1836	5	TXNDC11	16	11792024	Missense_Mutation	SNP	A	TCGA-D8-A3Z6-01A-11D-A23C-09		11792024	78562729	21	65257										
CDH1	0	genome.wustl.edu	37	chr16	68847369	68847370	+	Frame_Shift_Del	DEL	AA	AA	-													0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	tcgtcaccacaaatccagtgAacaacgatggcattttgaaa							TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	16	68847369	68847370	AA	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.1291_1292	p.N431fs	0.665:0.779	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	75	0	0	26	18	40	-	-	-	-	68847370	AA	-	68847369	7	5	740	1	0	1	0	1	0	0	0	0	3124	246	9	0	1325	0	CDH1	16	68847369	Frame_Shift_Del	DEL	AA	TCGA-D8-A3Z6-01A-11D-A23C-09	57055345	68847369	21507384	22	65258										
GRN	0	genome.wustl.edu	37	chr17	42429855	42429855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gtgggtgtgaaggacgtggaGtgtggggaaggacacttctg	20	4	1	1			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	17	42429855	42429855	G	T	SNP	GRN	ENST00000053867	human	ensembl	69_37n	1	known	missense	c.1560	p.E520D	0.000	NULL	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582	61	0	0	31	4	11.43	-	-	-	T	42429855	G	T	42429855	3	4	740	1	0	0	0	0	1	0	0	0	6855	1020	36	4	1602	4	GRN	17	42429855	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		42429855	38765355	23	65259										
TSHZ1	0	genome.wustl.edu	37	chr18	72999964	72999964	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	tttcagagaagtccgatgctGatggcagcagctttgaggag	14	7	1	3			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	18	72999964	72999964	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.2602	p.D868N	0.998	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	28	0	0	14	5	26.32	-	-	-	A	72999964	G	A	72999964	3	1	740	1	0	0	0	0	1	0	0	0	16719	1290	45	2	2469	2	TSHZ1	18	72999964	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		72999964	5077284	24	65260										
SAFB2	0	genome.wustl.edu	37	chr19	5621340	5621340	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	ctttaacacatctcttggctGacttcttgctggtggcttct	8	11	3	1			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	19	5621340	5621340	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.254	p.S85L	0.041	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	48	0	0	35	14	28.57	-	-	-	A	5621340	G	A	5621340	3	1	740	1	0	0	0	0	1	0	0	0	13893	1294	45	2	2687	2	SAFB2	19	5621340	Missense_Mutation	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		5621340	53507643	25	65261										
ZNF439	0	genome.wustl.edu	37	chr19	11959677	11959677	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	atttctgtcgctctgtcaccTgcgctatgccctgctttact	7	14	3	0			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	19	11959677	11959677	T	C	SNP	ZNF439	ENST00000592534	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.011	-	-	-	no_errors	ZNF439	HGNC	ENSG00000171291	25	0	0	7	5	41.67	-	-	-	C	11959677	T	C	11959677	1	2	740	0	1	0	0	0	0	0	0	0	18007	1595	55	5		5	ZNF439	19	11959677	RNA	SNP	T	TCGA-D8-A3Z6-01A-11D-A23C-09	6338337	11959677	47169306	26	65262										
TH1L	0	genome.wustl.edu	37	chr20	57561249	57561249	+	Frame_Shift_Del	DEL	C	C	-													0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	atcatggaaccctccatcttCaacactctgaagaggtatgt							TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	20	57561249	57561249	C	-	DEL	TH1L	ENST00000344018	human	ensembl	69_37n	1	known	frame_shift_del	c.189	p.F63fs	0.996	pfam_TH1	pfam_TH1	-	no_errors	TH1L	HGNC	ENSG00000101158	72	0	0	45	6	11.54	-	-	-	-	57561249	C	-	57561249	7	5	740	1	0	1	0	1	0	0	0	0	15934	825	29	0	195	0	TH1L	20	57561249	Frame_Shift_Del	DEL	C	TCGA-D8-A3Z6-01A-11D-A23C-09		57561249	5464271	27	65263										
YTHDF1	0	genome.wustl.edu	37	chr20	61834861	61834861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	agctgctcccatacgcggagCtctgggtctgctgaccttga	12	13	2	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	20	61834861	61834861	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	69_37n	-1	known	missense	c.431	p.S144N	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658	51	0	0	53	12	18.18	-	-	-	T	61834861	C	T	61834861	3	4	740	1	0	0	0	0	1	0	0	0	17595	797	28	4	1256	4	YTHDF1	20	61834861	Missense_Mutation	SNP	C	TCGA-D8-A3Z6-01A-11D-A23C-09	4273612	61834861	1190659	28	65264										
MED12	0	genome.wustl.edu	37	chrX	70345260	70345260	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.137931034482759	4	0.226490598570765	2.5010989010989	0	2.95584415584416	0.0476190476190476	0.355507088331516	0	gtactgtttggggtgggaaaGcagcgagatgatgcccgcca	16	8	0	2			TCGA-D8-A3Z6-01A-11D-A23C-09	TCGA-D8-A3Z6-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67a233d6-6e32-4224-a9af-c5579672d155	0ca11874-f9f6-4631-9a0a-1814a35f238c	X	70345260	70345260	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	silent	c.2286	p.K762	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	68	0	0	42	37	46.84	-	-	-	A	70345260	G	A	70345260	2	1	740	1	0	0	0	0	0	0	0	1	9499	962	34	4		4	MED12	23	70345260	Silent	SNP	G	TCGA-D8-A3Z6-01A-11D-A23C-09		70345260	84925300	29	65265										
DFFA	0	genome.wustl.edu	37	chr1	10527263	10527263	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	ttacctggaggtcctcctctGataggaggatgatgctggac	13	9	1	2			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	10527263	10527263	G	C	SNP	DFFA	ENST00000377038	human	ensembl	69_37n	-1	known	nonsense	c.425	p.S142*	0.982	pfam_DNA_fragmentation_C,pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_C,pfam_CAD,smart_CAD,pirsf_DNA_fragmentation_factor_asu,pfscan_CAD	-	no_errors	DFFA	HGNC	ENSG00000160049	54	0	0	50	6	10.71	-	-	-	C	10527263	G	C	10527263	4	2	741	1	0	0	0	0	0	1	0	0	4488	1294	45	2	610	2	DFFA	1	10527263	Nonsense_Mutation	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		10527263	238723358	1	65266										
HMCN1	0	genome.wustl.edu	37	chr1	185878571	185878571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	cttggagaattccttttgatCccagcctgaaagaggtcact	9	10	1	4			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	185878571	185878571	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.724	p.P242S	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	71	0	0	50	7	12.28	-	-	-	T	185878571	C	T	185878571	3	4	741	1	0	0	0	0	1	0	0	0	7271	855	30	2	742	2	HMCN1	1	185878571	Missense_Mutation	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09	175351308	185878571	63372050	2	65267										
LYST	0	genome.wustl.edu	37	chr1	235910542	235910542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	tgagtcttgatttaatggacCgaaggagaagggcatcggaa	14	5	1	3			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	235910542	235910542	C	T	SNP	LYST	ENST00000487530	human	ensembl	69_37n	-1	novel	missense	c.410	p.R137Q	0.968	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LYST	HGNC	ENSG00000143669	43	0	0	45	6	11.76	-	-	-	T	235910542	C	T	235910542	3	4	741	1	0	0	0	0	1	0	0	0	9195	667	23	1		1	LYST	1	235910542	Missense_Mutation	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09	50031971	235910542	13340079	3	65268										
BDP1	0	genome.wustl.edu	37	chr5	70837323	70837323	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	tgttcattcaaaggataaaaGccatattccttctagcctag	6	9	3	0			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	5	70837323	70837323	G	C	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.6065	p.S2022T	0.991	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	27	0	0	31	6	16.22	-	-	-	C	70837323	G	C	70837323	3	2	741	1	0	0	0	0	1	0	0	0	1399	971	34	4	6179	4	BDP1	5	70837323	Missense_Mutation	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		70837323	110077937	4	65269										
EEF1A1	0	genome.wustl.edu	37	chr6	74229113	74229113	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	gtctctgtgtcctggggcatCaatgatagtcacatagtact	10	9	3	1			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	6	74229113	74229113	C	T	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.271	p.D91N	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	54	0	0	58	7	10.77	-	-	-	T	74229113	C	T	74229113	3	4	741	1	0	0	0	0	1	0	0	0	4958	826	29	2	1141	2	EEF1A1	6	74229113	Missense_Mutation	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09		74229113	96885954	5	65270										
UBXN2B	0	genome.wustl.edu	37	chr8	59324005	59324005	+	Frame_Shift_Del	DEL	C	C	-													0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	ggaggtcttccgggccgcggCctccgagcgcgcgggatttg							TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	8	59324005	59324005	C	-	DEL	UBXN2B	ENST00000399598	human	ensembl	69_37n	1	known	frame_shift_del	c.61	p.P21fs	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2B	HGNC	ENSG00000215114	14	0	0	4	2	33.33	-	-	-	-	59324005	C	-	59324005	7	5	741	1	0	1	0	1	0	0	0	0	17012	739	26	0	63	0	UBXN2B	8	59324005	Frame_Shift_Del	DEL	C	TCGA-D8-A4Z1-01A-21D-A25Q-09		59324005	87040017	6	65271										
CTNNA3	0	genome.wustl.edu	37	chr10	68280418	68280418	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	atgcttgtaatgtcatctacGgcttcagtgaggacatgtat	10	7	3	1			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	10	68280418	68280418	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	silent	c.1488	p.A496	0.798	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	43	0	0	48	7	12.73	-	-	-	A	68280418	G	A	68280418	2	1	741	1	0	0	0	0	0	0	0	1	4046	1103	39	1		1	CTNNA3	10	68280418	Silent	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		68280418	67254329	7	65272										
GANAB	0	genome.wustl.edu	37	chr11	62400546	62400546	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	catgctccatgcctggcagaGagaagtccaaacccacagac	9	14	0	3			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	11	62400546	62400546	G	A	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.812	p.S271F	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	44	0	0	35	4	10.26	-	-	-	A	62400546	G	A	62400546	3	1	741	1	0	0	0	0	1	0	0	0	6283	942	33	2	2156	2	GANAB	11	62400546	Missense_Mutation	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		62400546	72605970	8	65273										
TAS2R8	0	genome.wustl.edu	37	chr12	10958815	10958815	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	tttgtcataagatagctaaaGgtcatcaaaatagaagaaat	7	4	3	3			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	12	10958815	10958815	G	T	SNP	TAS2R8	ENST00000240615	human	ensembl	69_37n	-1	known	silent	c.765	p.T255	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R8	HGNC	ENSG00000121314	25	0	0	18	3	14.29	-	-	-	T	10958815	G	T	10958815	2	4	741	1	0	0	0	0	0	0	0	1	15679	987	35	4		4	TAS2R8	12	10958815	Silent	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		10958815	122893080	9	65274										
OR6S1	0	genome.wustl.edu	37	chr14	21109617	21109617	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	ctcagcatctttggaatgatGacagaagtgagcagtatctc	10	8	3	4			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	14	21109617	21109617	G	A	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	silent	c.234	p.V78	0.990	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	22	0	0	17	5	22.73	-	-	-	A	21109617	G	A	21109617	2	1	741	1	0	0	0	0	0	0	0	1	11282	1277	45	2		2	OR6S1	14	21109617	Silent	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		21109617	86239923	10	65275										
EML5	0	genome.wustl.edu	37	chr14	89105192	89105192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	tatgttgataaatttggggtGctggtttactgtgaggcaca	13	4	0	2			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	14	89105192	89105192	G	A	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.4297	p.H1433Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	39	0	0	27	4	12.9	-	-	-	A	89105192	G	A	89105192	3	1	741	1	0	0	0	0	1	0	0	0	5137	1319	46	4	1688	4	EML5	14	89105192	Missense_Mutation	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09	67995575	89105192	18244348	11	65276										
COASY	0	genome.wustl.edu	37	chr17	40715279	40715279	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	cacaaggtgttgctcagtgtCgcgtgcatcctggcccagga	13	12	1	0			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	40715279	40715279	C	T	SNP	COASY	ENST00000590958	human	ensembl	69_37n	1	known	silent	c.726	p.V242	0.167	pfam_Cytidylyltransf	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	41	0	0	40	5	11.11	-	-	-	T	40715279	C	T	40715279	2	4	741	1	0	0	0	0	0	0	0	1	3682	871	31	1		1	COASY	17	40715279	Silent	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09		40715279	40479931	12	65277										
PSMC3IP	0	genome.wustl.edu	37	chr17	40726211	40726211	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	acttgaaggtcagcatcactCaccatgtcaaactggtcctg	8	12	4	1			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	40726211	40726211	C	T	SNP	PSMC3IP	ENST00000393795	human	ensembl	69_37n	-1	known	silent	c.243	p.V81	1.000	pfam_TBPIP,pfam_Pencillinase_R	pfam_TBPIP,pfam_Pencillinase_R	-	no_errors	PSMC3IP	HGNC	ENSG00000131470	73	0	0	89	16	15.24	-	-	-	T	40726211	C	T	40726211	2	4	741	1	0	0	0	0	0	0	0	1	12768	813	29	2		2	PSMC3IP	17	40726211	Silent	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09	10932	40726211	40468999	13	65278										
TEX14	0	genome.wustl.edu	37	chr17	56665337	56665337	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	gtgaagagtgcactattaaaCtgtgtggctttggcttgggc	14	6	0	2			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	56665337	56665337	C	T	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	silent	c.2640	p.Q880	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	55	0	0	60	8	11.76	-	-	-	T	56665337	C	T	56665337	2	4	741	1	0	0	0	0	0	0	0	1	15873	564	20	4		4	TEX14	17	56665337	Silent	SNP	C	TCGA-D8-A4Z1-01A-21D-A25Q-09	15939126	56665337	24529873	14	65279										
TAB3	0	genome.wustl.edu	37	chrX	30873310	30873310	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	6	0.119696870555794	2.36094674556213	2.55769230769231	2.32517482517482	0.0800865800865801	0.5224358974359	0	ttgcatggaagatggctgttGaggtggttgtgaaggaggag	19	2	0	3			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	X	30873310	30873310	G	A	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	nonsense	c.472	p.Q158*	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	106	0	0	91	11	10.78	-	-	-	A	30873310	G	A	30873310	4	1	741	1	0	0	0	0	0	1	0	0	15589	1299	45	2	1690	2	TAB3	23	30873310	Nonsense_Mutation	SNP	G	TCGA-D8-A4Z1-01A-21D-A25Q-09		30873310	124397250	15	65280										
PDE4DIP	0	genome.wustl.edu	37	chr1	145075683	145075683	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tcctcctcggccgctgctgcCcagctcccggctggctccgg	12	20	0	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	1	145075683	145075683	C	T	SNP	PDE4DIP	ENST00000369348	human	ensembl	69_37n	-1	known	nonsense	c.180	p.W60*	1.000	NULL	pfam_Spindle_assoc	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	8	0	0	20	15	42.86	-	-	-	T	145075683	C	T	145075683	4	4	742	1	0	0	0	0	0	1	0	0	11716	624	22	4	8632	4	PDE4DIP	1	145075683	Nonsense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09		145075683	104174938	1	65281										
ETV3	0	genome.wustl.edu	37	chr1	157105452	157105452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gccacagctggatctgccggGagcctggggatgactctgtt	15	11	2	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	1	157105452	157105452	G	A	SNP	ETV3	ENST00000368192	human	ensembl	69_37n	-1	known	missense	c.95	p.S32F	1.000	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV3	HGNC	ENSG00000117036	93	0	0	131	92	41.26	-	-	-	A	157105452	G	A	157105452	3	1	742	1	0	0	0	0	1	0	0	0	5316	1174	41	2	1487	2	ETV3	1	157105452	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	12029769	157105452	92145169	2	65282										
IFI16	0	genome.wustl.edu	37	chr1	159021640	159021640	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctgagaatgaagtcttccgaGtgaaggtttttaatattgac	10	5	1	4			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	1	159021640	159021640	G	C	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.1837	p.V613L	0.970	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	80	0	0	36	11	23.4	-	-	-	C	159021640	G	C	159021640	3	2	742	1	0	0	0	0	1	0	0	0	7565	1029	36	4	1699	4	IFI16	1	159021640	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	1916188	159021640	90228981	3	65283										
DENND1B	0	genome.wustl.edu	37	chr1	197480062	197480063	+	Frame_Shift_Ins	INS	-	-	T													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gtcaccagaaccaccacagaINSggaaagccaggttattctca							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	1	197480062	197480063	-	T	INS	DENND1B	ENST00000391979	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.776_775	p.L259fs	0.074:0.068	NULL	NULL	-	no_start_codon	DENND1B	HGNC	ENSG00000213047	33	0	0	3	3	50	-	-	-	T	197480063	-	T	197480062	7	5	742	1	0	1	1	0	0	0	0	0	4463	304	11	0	475	0	DENND1B	1	197480062	Frame_Shift_Ins	INS	-	TCGA-E2-A105-01A-11D-A10M-09	38458422	197480062	51770559	4	65284										
DQX1	0	genome.wustl.edu	37	chr2	74746321	74746321	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cacatgcttatgggttaggaGaaggtaatttccagtcccgt	11	8	0	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	74746321	74746321	G	T	SNP	DQX1	ENST00000393951	human	ensembl	69_37n	-1	known	missense	c.1843	p.L615I	0.932	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	64	0	0	92	73	44.24	-	-	-	T	74746321	G	T	74746321	3	4	742	1	0	0	0	0	1	0	0	0	4786	942	33	2	318	2	DQX1	2	74746321	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		74746321	168453052	5	65285										
ANKAR	0	genome.wustl.edu	37	chr2	190560903	190560903	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	catttggtatgaagtccgctGttgaaagagggttgtctgca	13	6	1	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	190560903	190560903	G	C	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.1516	p.V506L	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	99	0	0	24	23	48.94	-	-	-	C	190560903	G	C	190560903	3	2	742	1	0	0	0	0	1	0	0	0	623	1377	48	4	1538	4	ANKAR	2	190560903	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	115814582	190560903	52638470	6	65286										
CASP10	0	genome.wustl.edu	37	chr2	202093774	202093774	+	Frame_Shift_Del	DEL	C	C	-													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tctctgcgcagacacctcgaCcccccatgcgcaggtggagc							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	202093774	202093774	C	-	DEL	CASP10	ENST00000272879	human	ensembl	69_37n	1	known	frame_shift_del	c.1534	p.M514fs	0.000	smart_Pept_C14_p45_core	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP10	HGNC	ENSG00000003400	42	0	0	61	25	29.07	-	-	-	-	202093774	C	-	202093774	7	5	742	1	0	1	0	1	0	0	0	0	2694	507	18	0	1726	0	CASP10	2	202093774	Frame_Shift_Del	DEL	C	TCGA-E2-A105-01A-11D-A10M-09	11532871	202093774	41105599	7	65287										
SAG	0	genome.wustl.edu	37	chr2	234235788	234235788	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cctgtggggttgactttgagGtcaaagcattcgccacagac	12	10	1	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	234235788	234235788	G	C	SNP	SAG	ENST00000409110	human	ensembl	69_37n	1	known	missense	c.457	p.V153L	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561	30	0	0	61	34	35.79	-	-	-	C	234235788	G	C	234235788	3	2	742	1	0	0	0	0	1	0	0	0	13894	1261	44	4	479	4	SAG	2	234235788	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	32142014	234235788	8963585	8	65288										
RBM44	0	genome.wustl.edu	37	chr2	238726899	238726900	+	Frame_Shift_Ins	INS	-	-	CCAC													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	aaaacatgctttcacaatatINSaggagaaatgtgtactaaat							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	238726899	238726900	-	CCAC	INS	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	frame_shift_ins	c.1340_1341	p.G448fs	0.000:0.001	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	67	0	0	6	3	33.33	-	-	-	CCAC	238726900	-	CCAC	238726899	7	5	742	1	0	1	1	0	0	0	0	0	13221	1406	49	0	1346	0	RBM44	2	238726899	Frame_Shift_Ins	INS	-	TCGA-E2-A105-01A-11D-A10M-09	4491111	238726899	4472474	9	65289	476	2								
RBM44	0	genome.wustl.edu	37	chr2	238726902	238726903	+	Frame_Shift_Ins	INS	-	-	C													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	acatgctttcacaatataggINSagaaatgtgtactaaatcat							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	2	238726902	238726903	-	C	INS	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	frame_shift_ins	c.1343_1344	p.E449fs	0.010:0.002	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	68	0	0	6	3	33.33	-	-	-	C	238726903	-	C	238726902	7	5	742	1	0	1	1	0	0	0	0	0	13221	1174	41	0	1349	0	RBM44	2	238726902	Frame_Shift_Ins	INS	-	TCGA-E2-A105-01A-11D-A10M-09	3	238726902	4472471	10	65290	476	2								
DAG1	0	genome.wustl.edu	37	chr3	49568483	49568483	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ccctggtgaggtggtatcatCtgcctgtgctgcggatgaac	14	10	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	3	49568483	49568483	C	T	SNP	DAG1	ENST00000308775	human	ensembl	69_37n	1	known	missense	c.539	p.S180F	0.999	NULL	pfam_DAG1,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402	34	0	0	42	26	38.24	-	-	-	T	49568483	C	T	49568483	3	4	742	1	0	0	0	0	1	0	0	0	4257	913	32	2	545	2	DAG1	3	49568483	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09		49568483	148453947	11	65291										
TKT	0	genome.wustl.edu	37	chr3	53263320	53263320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ggaaacgccgcagtgggagcCgcagaggttgatgttgctct	16	9	1	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	3	53263320	53263320	C	T	SNP	TKT	ENST00000423525	human	ensembl	69_37n	-1	known	missense	c.1240	p.G414S	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931	26	0	0	54	29	34.52	-	-	-	T	53263320	C	T	53263320	3	4	742	1	0	0	0	0	1	0	0	0	16029	652	23	1	655	1	TKT	3	53263320	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	3694837	53263320	144759110	12	65292										
GBE1	0	genome.wustl.edu	37	chr3	81627203	81627203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctcatgtttgtatacatttcGgcatccatcaaccaaaatgc	5	11	2	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	3	81627203	81627203	G	A	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	silent	c.1491	p.A497	0.875	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	115	0	0	57	25	30.49	-	-	-	A	81627203	G	A	81627203	2	1	742	1	0	0	0	0	0	0	0	1	6320	1103	39	1		1	GBE1	3	81627203	Silent	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	28363883	81627203	116395227	13	65293										
NLGN1	0	genome.wustl.edu	37	chr3	173998327	173998327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cattcataccaaacccaaccGttttgaagaagtagcatgga	7	10	1	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	3	173998327	173998327	G	T	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	missense	c.1826	p.R609L	1.000	pfam_CarbesteraseB,prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	94	0	0	28	4	12.5	-	-	-	T	173998327	G	T	173998327	3	4	742	1	0	0	0	0	1	0	0	0	10533	1145	40	3	1724	3	NLGN1	3	173998327	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	92371124	173998327	24024103	14	65294										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	14	13	48.15	-	-	-	G	178952085	A	G	178952085	3	3	742	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A105-01A-11D-A10M-09	4953758	178952085	19070345	15	65295										
VCAN	0	genome.wustl.edu	37	chr5	82837519	82837520	+	Frame_Shift_Ins	INS	-	-	G													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctcctgacacaaaattagaaINSccttcagaagatgatggtaa							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	5	82837519	82837520	-	G	INS	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	frame_shift_ins	c.8697_8698	p.P2899fs	0.003:0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	53	0	0	17	2	10.53	-	-	-	G	82837520	-	G	82837519	7	5	742	1	0	1	1	0	0	0	0	0	17235	40	2	0	8723	0	VCAN	5	82837519	Frame_Shift_Ins	INS	-	TCGA-E2-A105-01A-11D-A10M-09		82837519	98077741	16	65296										
TCF7	0	genome.wustl.edu	37	chr5	133473797	133473797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gtcccccaactctctctctaCgaacatttcaacagcccaca	3	18	3	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	5	133473797	133473797	C	T	SNP	TCF7	ENST00000517741	human	ensembl	69_37n	1	known	missense	c.197	p.T66M	0.995	NULL	NULL	-	no_errors	TCF7	HGNC	ENSG00000081059	91	0	0	181	117	39.26	-	-	-	T	133473797	C	T	133473797	3	4	742	1	0	0	0	0	1	0	0	0	15791	547	19	1	503	1	TCF7	5	133473797	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	50636278	133473797	47441463	17	65297										
GABRA6	0	genome.wustl.edu	37	chr5	161116329	161116329	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gatgggcatgcttgtccactCaagtttgggagctgtaagtt	13	7	1	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	5	161116329	161116329	C	T	SNP	GABRA6	ENST00000520000	human	ensembl	69_37n	1	putative	missense	c.335	p.S112L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_Neur_channel	-	no_start_codon:pseudogene:no_stop_codon	GABRA6	HGNC	ENSG00000145863	142	0	0	139	77	35.48	-	-	-	T	161116329	C	T	161116329	3	4	742	1	0	0	0	0	1	0	0	0	6214	813	29	2	534	2	GABRA6	5	161116329	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	27642532	161116329	19798931	18	65298										
COL19A1	0	genome.wustl.edu	37	chr6	70733563	70733563	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ccagctctggctggccttaaTggagaaaatgtaagcctaac	10	10	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	6	70733563	70733563	T	G	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.1071	p.N357K	0.994	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	265	0	0	98	71	42.01	-	-	-	G	70733563	T	G	70733563	3	3	742	1	0	0	0	0	1	0	0	0	3706	1461	51	5	1113	5	COL19A1	6	70733563	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09		70733563	100381504	19	65299										
STX7	0	genome.wustl.edu	37	chr6	132792638	132792638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gctcttactcgagcaacaaaCtctttctctcgctcagcagc	6	15	4	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	6	132792638	132792638	C	T	SNP	STX7	ENST00000367941	human	ensembl	69_37n	-1	known	silent	c.351	p.E117	0.970	superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX7	HGNC	ENSG00000079950	124	0	0	55	23	29.49	-	-	-	T	132792638	C	T	132792638	2	4	742	1	0	0	0	0	0	0	0	1	15441	564	20	4		4	STX7	6	132792638	Silent	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	62059075	132792638	38322429	20	65300										
SDK1	0	genome.wustl.edu	37	chr7	4056882	4056882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tgaactactgcctggtgacaGacctgatcatctggacacag	10	11	2	4			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	7	4056882	4056882	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.2500	p.D834N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	26	0	0	37	53	58.89	-	-	-	A	4056882	G	A	4056882	3	1	742	1	0	0	0	0	1	0	0	0	14056	942	33	2	2566	2	SDK1	7	4056882	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		4056882	155081781	21	65301										
SDK1	0	genome.wustl.edu	37	chr7	4056981	4056981	+	Missense_Mutation	SNP	G	G	A													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tgaccgagtacaccttgcagGgaggtaagcttgtctccaaa							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	7	4056981	4056981	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.2599	p.G867R	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	24	0	0	43	60	58.25	-	-	-	A	4056981	G	A	4056981	3	1	742	1	0	0	0	0	1	0	0	0	14056	1233	43	4	2665	4	SDK1	7	4056981	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	99	4056981	155081682	22	65302	477	2								
SDK1	0	genome.wustl.edu	37	chr7	4056982	4056982	+	Missense_Mutation	SNP	G	G	C													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gaccgagtacaccttgcaggGaggtaagcttgtctccaaaa							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	7	4056982	4056982	G	C	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.2600	p.G867A	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	24	0	0	43	61	58.65	-	-	-	C	4056982	G	C	4056982	3	2	742	1	0	0	0	0	1	0	0	0	14056	1174	41	2	2666	2	SDK1	7	4056982	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	1	4056982	155081681	23	65303	477	2								
ZNF804B	0	genome.wustl.edu	37	chr7	88962693	88962693	+	Frame_Shift_Del	DEL	C	C	-													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	acagtgtttctggaaatggaCcagcatacaaagcccccagg							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	7	88962693	88962693	C	-	DEL	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	frame_shift_del	c.397	p.P133fs	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	44	0	0	9	2	18.18	-	-	-	-	88962693	C	-	88962693	7	5	742	1	0	1	0	1	0	0	0	0	18264	507	18	0	411	0	ZNF804B	7	88962693	Frame_Shift_Del	DEL	C	TCGA-E2-A105-01A-11D-A10M-09	84905711	88962693	70175970	24	65304										
RP1	0	genome.wustl.edu	37	chr8	55539493	55539493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tctctgaatgatgcttatttGgttcccctgcatgaacactg	8	10	1	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	8	55539493	55539493	G	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	silent	c.3051	p.L1017	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	136	0	0	78	54	40.91	-	-	-	A	55539493	G	A	55539493	2	1	742	1	0	0	0	0	0	0	0	1	13618	1339	47	4		4	RP1	8	55539493	Silent	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		55539493	90824529	25	65305										
PLIN2	0	genome.wustl.edu	37	chr9	19126264	19126264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctgaggacatgaggtcatacGtggagctcaccaagggcagg	15	9	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	9	19126264	19126264	G	A	SNP	PLIN2	ENST00000276914	human	ensembl	69_37n	-1	known	missense	c.74	p.T25M	1.000	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872	72	0	0	92	69	42.86	-	-	-	A	19126264	G	A	19126264	3	1	742	1	0	0	0	0	1	0	0	0	12164	1145	40	1	1263	1	PLIN2	9	19126264	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		19126264	122087167	26	65306										
FAM189A2	0	genome.wustl.edu	37	chr9	71998865	71998865	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ttttttgctgtgatgcagggAtcttcattccaaatgtcaga	9	7	3	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	9	71998865	71998865	A	T	SNP	FAM189A2	ENST00000257515	human	ensembl	69_37n	1	known	silent	c.627	p.G209	0.998	NULL	pfam_CD20-like	-	no_errors	FAM189A2	HGNC	ENSG00000135063	51	0	0	28	15	34.88	-	-	-	T	71998865	A	T	71998865	2	4	742	1	0	0	0	0	0	0	0	1	5558	320	12	5		5	FAM189A2	9	71998865	Silent	SNP	A	TCGA-E2-A105-01A-11D-A10M-09	52872601	71998865	69214566	27	65307										
C9orf64	0	genome.wustl.edu	37	chr9	86571300	86571300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cgcgcagctctggccccgccGccttggccagcagcagctct	12	19	2	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	9	86571300	86571300	G	T	SNP	C9orf64	ENST00000376344	human	ensembl	69_37n	-1	known	missense	c.116	p.A39E	0.001	NULL	pfam_DUF2419	-	no_errors	C9orf64	HGNC	ENSG00000165118	25	0	0	41	29	41.43	-	-	-	T	86571300	G	T	86571300	3	4	742	1	0	0	0	0	1	0	0	0	2514	1087	38	3	925	3	C9orf64	9	86571300	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	14572435	86571300	54642131	28	65308										
LRRC8A	0	genome.wustl.edu	37	chr9	131670265	131670265	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	accatcatcaaggtgatcaaGttcatcctcatcatctgcta	5	12	7	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	9	131670265	131670265	G	C	SNP	LRRC8A	ENST00000259324	human	ensembl	69_37n	1	known	missense	c.822	p.K274N	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802	86	0	0	105	79	42.93	-	-	-	C	131670265	G	C	131670265	3	2	742	1	0	0	0	0	1	0	0	0	9087	1020	36	4	824	4	LRRC8A	9	131670265	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	45098965	131670265	9543166	29	65309										
PRKG1	0	genome.wustl.edu	37	chr10	52834557	52834557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cagagcgcgagcaccttgcaGggcgagccgcgcaccaagcg	15	15	0	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	10	52834557	52834557	G	T	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	missense	c.207	p.Q69H	0.996	pirsf_cGMP-dependent_protein_kinase	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	46	0	0	106	82	43.62	-	-	-	T	52834557	G	T	52834557	3	4	742	1	0	0	0	0	1	0	0	0	12603	991	35	4	479	4	PRKG1	10	52834557	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		52834557	82700190	30	65310										
GOLGA7B	0	genome.wustl.edu	37	chr10	99619286	99619286	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tttatccagagagactacagCgatgggaccatctgtcagtt	10	9	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	10	99619286	99619286	C	T	SNP	GOLGA7B	ENST00000370602	human	ensembl	69_37n	1	known	silent	c.84	p.S28	0.992	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	GOLGA7B	HGNC	ENSG00000155265	32	0	0	45	40	47.06	-	-	-	T	99619286	C	T	99619286	2	4	742	1	0	0	0	0	0	0	0	1	6612	767	27	1		1	GOLGA7B	10	99619286	Silent	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	46784729	99619286	35915461	31	65311										
MEN1	0	genome.wustl.edu	37	chr11	64577330	64577333	+	Frame_Shift_Del	DEL	AGAC	AGAC	-													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gcatagagggcggcgatgatAgacaggtcggccacgggaaa							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	AGAC	AGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	11	64577330	64577333	AGAC	-	DEL	MEN1	ENST00000337652	human	ensembl	69_37n	-1	known	frame_shift_del	c.252_249	p.I85fs	0.999:0.998:0.970:0.066	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	23	0	0	23	28	54.9	-	-	-	-	64577333	AGAC	-	64577330	7	5	742	1	0	1	0	1	0	0	0	0	9543	407	15	0	1631	0	MEN1	11	64577330	Frame_Shift_Del	DEL	AGAC	TCGA-E2-A105-01A-11D-A10M-09		64577330	70429186	32	65312										
CACNA1C	0	genome.wustl.edu	37	chr12	2714315	2714315	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	caggcccctgagggccatcaAcagggccaaggggctaaagg	15	12	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	12	2714315	2714315	A	G	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.3029	p.N1010S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	32	0	0	63	7	10	-	-	-	G	2714315	A	G	2714315	3	3	742	1	0	0	0	0	1	0	0	0	2565	43	2	5	3291	5	CACNA1C	12	2714315	Missense_Mutation	SNP	A	TCGA-E2-A105-01A-11D-A10M-09		2714315	131137580	33	65313										
MYO1H	0	genome.wustl.edu	37	chr12	109831184	109831184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tgaatccataccaggagctcGgaatctacactgtgagccag	10	11	1	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	12	109831184	109831184	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.175	p.G59R	0.717	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	142	0	0	133	73	35.44	-	-	-	A	109831184	G	A	109831184	3	1	742	1	0	0	0	0	1	0	0	0	10147	1117	39	1	181	1	MYO1H	12	109831184	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	107116869	109831184	24020711	34	65314										
ATP2A2	0	genome.wustl.edu	37	chr12	110778619	110778619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gccatctgtcgccgcatcggCatcttcgggcaggatgagga	14	12	2	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	12	110778619	110778619	C	T	SNP	ATP2A2	ENST00000548169	human	ensembl	69_37n	1	novel	missense	c.1588	p.H530Y	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP2A2	HGNC	ENSG00000174437	38	0	0	50	27	35.06	-	-	-	T	110778619	C	T	110778619	3	4	742	1	0	0	0	0	1	0	0	0	1141	697	25	4	1971	4	ATP2A2	12	110778619	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	947435	110778619	23073276	35	65315										
OAS1	0	genome.wustl.edu	37	chr12	113357242	113357242	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ccgacgatcccaggaggtatCagaaatatggttacattgga	11	8	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	12	113357242	113357242	C	G	SNP	OAS1	ENST00000202917	human	ensembl	69_37n	1	known	missense	c.1087	p.Q363E	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127	41	0	0	16	10	38.46	-	-	-	G	113357242	C	G	113357242	3	3	742	1	0	0	0	0	1	0	0	0	10872	827	29	2	1166	2	OAS1	12	113357242	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	2578623	113357242	20494653	36	65316										
ZCCHC8	0	genome.wustl.edu	37	chr12	122966134	122966134	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctttgagccaccctggtgggTaccctagctggcgcatccga	12	14	0	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	12	122966134	122966134	T	C	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.953	p.Y318C	1.000	pfam_PSP,smart_PSP	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	111	0	0	56	40	40.82	-	-	-	C	122966134	T	C	122966134	3	2	742	1	0	0	0	0	1	0	0	0	17690	1638	57	5	1190	5	ZCCHC8	12	122966134	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09	9608892	122966134	10885761	37	65317										
SHISA2	0	genome.wustl.edu	37	chr13	26621019	26621019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctggcgtgaggacgacccccGggaggtgctggcactgggga	19	11	0	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	13	26621019	26621019	G	A	SNP	SHISA2	ENST00000319420	human	ensembl	69_37n	-1	known	missense	c.520	p.R174W	0.972	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730	37	0	0	41	21	33.87	-	-	-	A	26621019	G	A	26621019	3	1	742	1	0	0	0	0	1	0	0	0	14369	1115	39	1	371	1	SHISA2	13	26621019	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09		26621019	88548859	38	65318										
SLC10A2	0	genome.wustl.edu	37	chr13	103698518	103698518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ttgaaatcctccatttgcctTataaaacgatgactctggct	6	10	1	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	13	103698518	103698518	T	C	SNP	SLC10A2	ENST00000245312	human	ensembl	69_37n	-1	known	missense	c.1012	p.K338E	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255	268	0	0	45	34	43.04	-	-	-	C	103698518	T	C	103698518	3	2	742	1	0	0	0	0	1	0	0	0	14463	1763	61	5	38	5	SLC10A2	13	103698518	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09	77077499	103698518	11471360	39	65319										
OR4M1	0	genome.wustl.edu	37	chr14	20249411	20249411	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gtcaccaaatatattttgtgTgaagagaagtgaaagataaa	9	3	1	4			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	14	20249411	20249411	T	G	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	missense	c.930	p.C310W	0.979	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	144	0	0	75	14	15.73	-	-	-	G	20249411	T	G	20249411	3	3	742	1	0	0	0	0	1	0	0	0	11148	1702	59	5	932	5	OR4M1	14	20249411	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09		20249411	87100129	40	65320										
GPHN	0	genome.wustl.edu	37	chr14	67610087	67610087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	atttttttccagcccagatgActtactcaatgccttgaatg	6	10	1	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	14	67610087	67610087	A	G	SNP	GPHN	ENST00000478722	human	ensembl	69_37n	1	known	missense	c.1757	p.D586G	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	pfam_Mopterin-bd,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723	555	1	0.18	241	135	35.9	-	-	-	G	67610087	A	G	67610087	3	3	742	1	0	0	0	0	1	0	0	0	6660	275	10	5	1827	5	GPHN	14	67610087	Missense_Mutation	SNP	A	TCGA-E2-A105-01A-11D-A10M-09	47360676	67610087	39739453	41	65321										
ZNF18	0	genome.wustl.edu	37	chr17	11881385	11881385	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	taaggtttctctccagtgtgAaccctctgatgtctattaaa	7	9	3	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	17	11881385	11881385	A	G	SNP	ZNF18	ENST00000322748	human	ensembl	69_37n	-1	known	silent	c.1539	p.V513	0.973	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957	269	1	0.37	27	51	64.56	-	-	-	G	11881385	A	G	11881385	2	3	742	1	0	0	0	0	0	0	0	1	17843	233	9	5		5	ZNF18	17	11881385	Silent	SNP	A	TCGA-E2-A105-01A-11D-A10M-09		11881385	69313825	42	65322										
NCOR1	0	genome.wustl.edu	37	chr17	16068397	16068397	+	Frame_Shift_Del	DEL	A	A	-													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ctttgagagttttgaaggtgAagcattttgatcatctccac							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	17	16068397	16068397	A	-	DEL	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_del	c.514	p.S172fs	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	283	0	0	47	60	54.55	-	-	-	-	16068397	A	-	16068397	7	5	742	1	0	1	0	1	0	0	0	0	10307	246	9	0	6976	0	NCOR1	17	16068397	Frame_Shift_Del	DEL	A	TCGA-E2-A105-01A-11D-A10M-09	4187012	16068397	65126813	43	65323										
CCDC144A	0	genome.wustl.edu	37	chr17	16593944	16593944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ccagccccagcacgacgtccGcctggaagatcttggcgagc	12	16	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	17	16593944	16593944	G	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.230	p.R77H	0.000	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	17	0	0	17	36	67.92	-	-	-	A	16593944	G	A	16593944	3	1	742	1	0	0	0	0	1	0	0	0	2802	1087	38	1	232	1	CCDC144A	17	16593944	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	525547	16593944	64601266	44	65324										
MSI2	0	genome.wustl.edu	37	chr17	55478762	55478762	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ggtcacaagaacaaagaaaaTatttgtaggcgggttatctg	11	5	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	17	55478762	55478762	T	A	SNP	MSI2	ENST00000284073	human	ensembl	69_37n	1	known	missense	c.335	p.I112K	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI2	HGNC	ENSG00000153944	111	0	0	237	89	27.3	-	-	-	A	55478762	T	A	55478762	3	1	742	1	0	0	0	0	1	0	0	0	9948	1406	49	5	407	5	MSI2	17	55478762	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09	38884818	55478762	25716448	45	65325										
MUC16	0	genome.wustl.edu	37	chr19	8982254	8982254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tggaacacctgcttgataggCagacctgggccgctgagggg	16	10	0	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	19	8982254	8982254	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.42021	p.L14007	0.002	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	12	0	0	29	20	40	-	-	-	T	8982254	C	T	8982254	2	4	742	1	0	0	0	0	0	0	0	1	10045	697	25	4		4	MUC16	19	8982254	Silent	SNP	C	TCGA-E2-A105-01A-11D-A10M-09		8982254	50146729	46	65326										
LPHN1	0	genome.wustl.edu	37	chr19	14274041	14274041	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tggtgtggcgggcggccacgTagtcctcccacgaggcatac	15	13	0	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	19	14274041	14274041	T	C	SNP	LPHN1	ENST00000340736	human	ensembl	69_37n	-1	known	missense	c.587	p.Y196C	0.998	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071	15	0	0	21	22	51.16	-	-	-	C	14274041	T	C	14274041	3	2	742	1	0	0	0	0	1	0	0	0	8981	1638	57	5	3913	5	LPHN1	19	14274041	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09	5291787	14274041	44854942	47	65327										
ZNF814	0	genome.wustl.edu	37	chr19	58384888	58384888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tctttctccagtgtgcatgcGctgatggtgaacaaggctgc	12	10	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	19	58384888	58384888	G	A	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.1870	p.R624C	0.030	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	138	1	0.72	89	56	38.62	-	-	-	A	58384888	G	A	58384888	3	1	742	1	0	0	0	0	1	0	0	0	18269	1087	38	1	701	1	ZNF814	19	58384888	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	44110847	58384888	744095	48	65328										
SLC4A11	0	genome.wustl.edu	37	chr20	3209309	3209309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gggacaggcccaccaggacgCtggcgcccagcgaggtcagc	16	15	1	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	20	3209309	3209309	C	T	SNP	SLC4A11	ENST00000380059	human	ensembl	69_37n	-1	known	missense	c.2366	p.S789N	1.000	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_2,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	15	0	0	14	11	44	-	-	-	T	3209309	C	T	3209309	3	4	742	1	0	0	0	0	1	0	0	0	14741	797	28	4	402	4	SLC4A11	20	3209309	Missense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09		3209309	59816211	49	65329										
CTNNBL1	0	genome.wustl.edu	37	chr20	36488710	36488710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	accagatcctaaacatgcgaGgaagctccatcaaaattgtc	7	11	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	20	36488710	36488710	G	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	1	known	missense	c.1486	p.G496R	1.000	NULL	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	137	0	0	278	92	24.73	-	-	-	A	36488710	G	A	36488710	3	1	742	1	0	0	0	0	1	0	0	0	4050	1001	35	4	1625	4	CTNNBL1	20	36488710	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	33279401	36488710	26536810	50	65330										
RTEL1	0	genome.wustl.edu	37	chr20	62309515	62309516	+	Frame_Shift_Ins	INS	-	-	A													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	agggctgaacatggagctggINSaagacattgcaaagctgaag							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	20	62309515	62309516	-	A	INS	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	frame_shift_ins	c.937_938	p.D314fs	1.000:1.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	57	0	0	564	67	10.62	-	-	-	A	62309516	-	A	62309515	7	5	742	1	0	1	1	0	0	0	0	0	13806	1175	41	0	975	0	RTEL1	20	62309515	Frame_Shift_Ins	INS	-	TCGA-E2-A105-01A-11D-A10M-09	25820805	62309515	716005	51	65331			1	104		3	3	2505	N	G_-	1.022397e-05
RTEL1	0	genome.wustl.edu	37	chr20	62311271	62311271	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	ggctgcatcctggactcgctGgaccagatcatccagcacct	10	15	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	20	62311271	62311271	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	silent	c.1107	p.L369	1.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	39	0	0	296	43	12.68	-	-	-	A	62311271	G	A	62311271	2	1	742	1	0	0	0	0	0	0	0	1	13806	1335	47	4		4	RTEL1	20	62311271	Silent	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	1756	62311271	714249	52	65332			1	104		3	3	2505	N	G_-	1.022397e-05
RTEL1	0	genome.wustl.edu	37	chr20	62312019	62312019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cgccctgctgccctccaggtGctggagtgttcaccaacacg	11	16	1	0			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	20	62312019	62312019	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	missense	c.1138	p.A380T	0.190	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	26	0	0	208	28	11.81	-	-	-	A	62312019	G	A	62312019	3	1	742	1	0	0	0	0	1	0	0	0	13806	1319	46	4	1188	4	RTEL1	20	62312019	Missense_Mutation	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	748	62312019	713501	53	65333			1	104		3	3	2505	N	G_-	1.022397e-05
PLXNB2	0	genome.wustl.edu	37	chr22	50720419	50720421	+	In_Frame_Del	DEL	GTG	GTG	-													0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	cgtccatctcgatcagcaccGtgaggttgtaggcctctggc							TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	22	50720419	50720421	GTG	-	DEL	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	in_frame_del	c.3209_3207	p.T1070in_frame_del	0.999:1.000:1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	15	0	0	10	17	58.62	-	-	-	-	50720421	GTG	-	50720419	7	5	742	1	0	1	0	1	0	0	0	0	12198	1145	40	0	2379	0	PLXNB2	22	50720419	In_Frame_Del	DEL	GTG	TCGA-E2-A105-01A-11D-A10M-09		50720419	584147	54	65334										
TLR8	0	genome.wustl.edu	37	chrX	12937622	12937622	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	tgacagaacttagtctaattCaaaacaatatatacaacata	3	7	2	2			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	X	12937622	12937622	C	T	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	nonsense	c.463	p.Q155*	0.013	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	86	0	0	20	14	40	-	-	-	T	12937622	C	T	12937622	4	4	742	1	0	0	0	0	0	1	0	0	16052	827	29	2	469	2	TLR8	23	12937622	Nonsense_Mutation	SNP	C	TCGA-E2-A105-01A-11D-A10M-09		12937622	142332938	55	65335										
MAGEB6	0	genome.wustl.edu	37	chrX	26212547	26212547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	gcgcttaagcaaagatgctgTaaagaagaaggcgtgcacgt	13	7	0	3			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	X	26212547	26212547	T	G	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	1	known	missense	c.584	p.V195G	0.086	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	27	0	0	31	19	38	-	-	-	G	26212547	T	G	26212547	3	3	742	1	0	0	0	0	1	0	0	0	9250	1638	57	5	586	5	MAGEB6	23	26212547	Missense_Mutation	SNP	T	TCGA-E2-A105-01A-11D-A10M-09	13274925	26212547	129058013	56	65336										
FAM123B	0	genome.wustl.edu	37	chrX	63411643	63411643	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	aggctgtcatctggctcataGaactcatatagggcatctcc	9	11	5	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	X	63411643	63411643	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	silent	c.1524	p.F508	1.000	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	53	0	0	46	27	36.99	-	-	-	A	63411643	G	A	63411643	2	1	742	1	0	0	0	0	0	0	0	1	5463	933	33	2		2	FAM123B	23	63411643	Silent	SNP	G	TCGA-E2-A105-01A-11D-A10M-09	37199096	63411643	91858917	57	65337										
FMR1	0	genome.wustl.edu	37	chrX	147024827	147024827	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.107142857142857	6	0.553235724720845	1.43021582733813	1.43021582733813	1.43021582733813	0.102564102564103	0.5224358974359	0	aatagggggcacggcagacgCggtcctggatatacttcagg	15	9	1	1			TCGA-E2-A105-01A-11D-A10M-09	TCGA-E2-A105-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2441f3e0-2016-4313-8c05-486759f5dd0f	5d595e01-bc5f-4480-8729-3b2806bda80a	X	147024827	147024827	C	T	SNP	FMR1	ENST00000370475	human	ensembl	69_37n	1	known	silent	c.1452	p.R484	0.998	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	83	0	0	93	63	40.38	-	-	-	T	147024827	C	T	147024827	2	4	742	1	0	0	0	0	0	0	0	1	6006	755	27	1		1	FMR1	23	147024827	Silent	SNP	C	TCGA-E2-A105-01A-11D-A10M-09	83613184	147024827	8245733	58	65338										
TADA1	0	genome.wustl.edu	37	chr1	166839061	166839061	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tcctctttgctgatcttctgCttgaaccacagctttaggtt	7	11	3	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	1	166839061	166839061	C	T	SNP	TADA1	ENST00000367874	human	ensembl	69_37n	-1	known	silent	c.105	p.K35	1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382	165	0	0	351	81	18.75	-	-	-	T	166839061	C	T	166839061	2	4	743	1	0	0	0	0	0	0	0	1	15601	796	28	4		4	TADA1	1	166839061	Silent	SNP	C	TCGA-E2-A107-01A-11D-A10M-09		166839061	82411560	1	65339										
KIF14	0	genome.wustl.edu	37	chr1	200567540	200567540	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	attgtccatttgaaacataaTtcctgctttctggtagaagt	7	7	1	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	1	200567540	200567540	T	A	SNP	KIF14	ENST00000367350	human	ensembl	69_37n	-1	known	missense	c.2374	p.I792F	0.995	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193	273	0	0	360	279	43.59	-	-	-	A	200567540	T	A	200567540	3	1	743	1	0	0	0	0	1	0	0	0	8328	1493	52	5	2640	5	KIF14	1	200567540	Missense_Mutation	SNP	T	TCGA-E2-A107-01A-11D-A10M-09	33728479	200567540	48683081	2	65340										
SLC9A4	0	genome.wustl.edu	37	chr2	103120013	103120013	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	attcatcgttgtggggcttgGaggggtattgtttggcatcg	16	5	1	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	2	103120013	103120013	G	T	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	1	known	missense	c.827	p.G276V	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	613	0	0	616	77	11.11	-	-	-	T	103120013	G	T	103120013	3	4	743	1	0	0	0	0	1	0	0	0	14805	1174	41	2	837	2	SLC9A4	2	103120013	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		103120013	140079360	3	65341										
MSL2	0	genome.wustl.edu	37	chr3	135871094	135871094	+	Frame_Shift_Del	DEL	G	G	-													0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tatttgaatgttcaggtgaaGgaatatttataccaaatcta							TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	3	135871094	135871094	G	-	DEL	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	frame_shift_del	c.629	p.P210fs	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	119	0	0	113	43	27.22	-	-	-	-	135871094	G	-	135871094	7	5	743	1	0	1	0	1	0	0	0	0	9950	1000	35	0	1108	0	MSL2	3	135871094	Frame_Shift_Del	DEL	G	TCGA-E2-A107-01A-11D-A10M-09		135871094	62151336	4	65342										
HMGCS1	0	genome.wustl.edu	37	chr5	43295926	43295926	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	taaggaagtcattcagcaacAtccgagctagagatttctga	9	8	3	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	5	43295926	43295926	A	G	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	missense	c.833	p.M278T	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	182	0	0	236	79	25.08	-	-	-	G	43295926	A	G	43295926	3	3	743	1	0	0	0	0	1	0	0	0	7283	217	8	5	753	5	HMGCS1	5	43295926	Missense_Mutation	SNP	A	TCGA-E2-A107-01A-11D-A10M-09		43295926	137619334	5	65343										
ENC1	0	genome.wustl.edu	37	chr5	73931474	73931474	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	aggctggttaccacaccgtcAttctgcaggattttcagttt	9	10	3	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	5	73931474	73931474	A	T	SNP	ENC1	ENST00000302351	human	ensembl	69_37n	-1	known	missense	c.837	p.N279K	0.950	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617	114	0	0	63	24	27.59	-	-	-	T	73931474	A	T	73931474	3	4	743	1	0	0	0	0	1	0	0	0	5150	214	8	5	936	5	ENC1	5	73931474	Missense_Mutation	SNP	A	TCGA-E2-A107-01A-11D-A10M-09	30635548	73931474	106983786	6	65344										
DDX46	0	genome.wustl.edu	37	chr5	134147500	134147500	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tacaaaaagcagctcttggtCtacaagattcagatgatgag	9	7	3	4			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	5	134147500	134147500	C	A	SNP	DDX46	ENST00000452510	human	ensembl	69_37n	1	known	missense	c.2401	p.L801I	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833	185	0	0	187	138	42.33	-	-	-	A	134147500	C	A	134147500	3	1	743	1	0	0	0	0	1	0	0	0	4395	912	32	2	2471	2	DDX46	5	134147500	Missense_Mutation	SNP	C	TCGA-E2-A107-01A-11D-A10M-09	60216026	134147500	46767760	7	65345										
PAIP2	0	genome.wustl.edu	37	chr5	138699536	138699536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	aatgaagatgtgattattaaCggtcattctcatgaagatga	9	4	2	6			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	5	138699536	138699536	C	T	SNP	PAIP2	ENST00000265192	human	ensembl	69_37n	1	known	silent	c.63	p.N21	0.996	NULL	pfam_Ataxin-2_C	-	no_errors	PAIP2	HGNC	ENSG00000120727	160	0	0	190	87	31.29	-	-	-	T	138699536	C	T	138699536	2	4	743	1	0	0	0	0	0	0	0	1	11470	535	19	1		1	PAIP2	5	138699536	Silent	SNP	C	TCGA-E2-A107-01A-11D-A10M-09	4552036	138699536	42215724	8	65346										
PCDHB6	0	genome.wustl.edu	37	chr5	140531214	140531214	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	ctcctacaccctgttcgtccGcgagaacaacagccccgccc	7	20	0	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	5	140531214	140531214	G	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	missense	c.1376	p.R459H	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	68	0	0	55	20	26.67	-	-	-	A	140531214	G	A	140531214	3	1	743	1	0	0	0	0	1	0	0	0	11619	1087	38	1	1378	1	PCDHB6	5	140531214	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	1831678	140531214	40384046	9	65347										
KIAA0240	0	genome.wustl.edu	37	chr6	42797341	42797342	+	Frame_Shift_Ins	INS	-	-	T													0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	ccagactataaatgggcaacINSttcttcaaactcaaccctct							TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	6	42797341	42797342	-	T	INS	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	frame_shift_ins	c.1270_1271	p.L425fs	1.000:1.000	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	93	0	0	85	22	20.56	-	-	-	T	42797342	-	T	42797341	7	5	743	1	0	1	1	0	0	0	0	0	8216	565	20	0	1284	0	KIAA0240	6	42797341	Frame_Shift_Ins	INS	-	TCGA-E2-A107-01A-11D-A10M-09		42797341	128317726	10	65348										
ADAT2	0	genome.wustl.edu	37	chr6	143759817	143759817	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	acaggaacttcagtattttcGagggcttctttggcctgaaa	10	8	2	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	6	143759817	143759817	G	A	SNP	ADAT2	ENST00000237283	human	ensembl	69_37n	-1	known	silent	c.111	p.L37	0.483	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT2	HGNC	ENSG00000189007	282	1	0.35	297	146	32.96	-	-	-	A	143759817	G	A	143759817	2	1	743	1	0	0	0	0	0	0	0	1	285	1045	37	1		1	ADAT2	6	143759817	Silent	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	100962476	143759817	27355250	11	65349										
GALNT11	0	genome.wustl.edu	37	chr7	151810410	151810410	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	ccgaaaaaggcgaccatatgGatctcccgaaggccaggaca	11	12	1	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	7	151810410	151810410	G	C	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	missense	c.1160	p.G387A	0.986	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234	128	0	0	77	50	39.37	-	-	-	C	151810410	G	C	151810410	3	2	743	1	0	0	0	0	1	0	0	0	6259	1174	41	2	1186	2	GALNT11	7	151810410	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		151810410	7328253	12	65350										
ZHX1	0	genome.wustl.edu	37	chr8	124265786	124265786	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tgatttgttaacaagttcatCaaggtcttgctcattaagaa	7	6	4	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	8	124265786	124265786	C	T	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	missense	c.2401	p.D801N	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	225	0	0	317	45	12.33	-	-	-	T	124265786	C	T	124265786	3	4	743	1	0	0	0	0	1	0	0	0	17771	826	29	2	224	2	ZHX1	8	124265786	Missense_Mutation	SNP	C	TCGA-E2-A107-01A-11D-A10M-09		124265786	22098236	13	65351										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18574047	18574047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	ggactgcccaccagaagcagGtgatttccgagctcagcaat	11	12	1	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	9	18574047	18574047	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	missense	c.257	p.G86D	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	95	0	0	74	29	28.16	-	-	-	A	18574047	G	A	18574047	3	1	743	1	0	0	0	0	1	0	0	0	274	1261	44	4	271	4	ADAMTSL1	9	18574047	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		18574047	122639384	14	65352										
GLIPR1	0	genome.wustl.edu	37	chr12	75892695	75892695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	gttaattcagtaattctaatActgtctgttataattaccat	4	6	3	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	12	75892695	75892695	A	G	SNP	GLIPR1	ENST00000266659	human	ensembl	69_37n	1	known	missense	c.738	p.I246M	0.002	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278	271	1	0.36	376	205	35.16	-	-	-	G	75892695	A	G	75892695	3	3	743	1	0	0	0	0	1	0	0	0	6493	381	14	5	760	5	GLIPR1	12	75892695	Missense_Mutation	SNP	A	TCGA-E2-A107-01A-11D-A10M-09		75892695	57959200	15	65353										
PIWIL1	0	genome.wustl.edu	37	chr12	130833916	130833916	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	atgttcaacttttatcatcaGacagaagaacataaatttca	4	7	4	3			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	12	130833916	130833916	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	silent	c.867	p.Q289	0.201	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	187	0	0	296	53	15.19	-	-	-	A	130833916	G	A	130833916	2	1	743	1	0	0	0	0	0	0	0	1	12031	933	33	2		2	PIWIL1	12	130833916	Silent	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	54941221	130833916	3017979	16	65354										
CHD2	0	genome.wustl.edu	37	chr15	93527570	93527570	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	ctgttttaaggttgccaactTtgcaacaatggaagatgaag	10	6	0	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	15	93527570	93527570	T	G	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	1	putative	missense	c.3077	p.F1026C	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	116	0	0	109	38	25.85	-	-	-	G	93527570	T	G	93527570	3	3	743	1	0	0	0	0	1	0	0	0	3354	1841	64	5	3175	5	CHD2	15	93527570	Missense_Mutation	SNP	T	TCGA-E2-A107-01A-11D-A10M-09		93527570	9003822	17	65355										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1812950	1812950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	cggcttcagccagcgccgcaAccatgccatgtgcccgatct	10	17	2	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	16	1812950	1812950	A	G	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.1838	p.N613S	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	48	0	0	24	21	46.67	-	-	-	G	1812950	A	G	1812950	3	3	743	1	0	0	0	0	1	0	0	0	9357	43	2	5	1916	5	MAPK8IP3	16	1812950	Missense_Mutation	SNP	A	TCGA-E2-A107-01A-11D-A10M-09		1812950	88541803	18	65356										
CDH1	0	genome.wustl.edu	37	chr16	68845762	68845762	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	accactgggctggaccgagaGgtcaggggtcaggaggatcc	17	10	2	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	16	68845762	68845762	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	silent	c.1008	p.E336	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	103	0	0	24	21	46.67	-	-	-	A	68845762	G	A	68845762	2	1	743	1	0	0	0	0	0	0	0	1	3124	1014	35	4		4	CDH1	16	68845762	Silent	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	67032812	68845762	21508991	19	65357										
TBC1D3B	0	genome.wustl.edu	37	chr17	34497337	34497337	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tagaggaggaacaaggcggcGatgtggctcaggtccctgca	16	9	1	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	17	34497337	34497337	G	A	SNP	TBC1D3B	ENST00000398801	human	ensembl	69_37n	-1	known	silent	c.579	p.I193	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3B	HGNC	ENSG00000224226	61	0	0	31	17	35.42	-	-	-	A	34497337	G	A	34497337	2	1	743	1	0	0	0	0	0	0	0	1	15713	1048	37	1		1	TBC1D3B	17	34497337	Silent	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		34497337	46697873	20	65358										
CLUL1	0	genome.wustl.edu	37	chr18	645027	645027	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	tccctcttgaagaaagtgctGagagttctaacttcattggc	9	9	3	3			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	18	645027	645027	G	A	SNP	CLUL1	ENST00000338387	human	ensembl	69_37n	1	known	missense	c.1327	p.E443K	0.218	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	117	0	0	146	31	17.51	-	-	-	A	645027	G	A	645027	3	1	743	1	0	0	0	0	1	0	0	0	3600	1291	45	2	1353	2	CLUL1	18	645027	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		645027	77432221	21	65359										
RPGR	0	genome.wustl.edu	37	chrX	38182684	38182684	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	cagaatgttcatctccacatGaaagatgtacagggacatca	8	9	3	3			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	X	38182684	38182684	G	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.122	p.S41L	1.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	146	0	0	206	93	31	-	-	-	A	38182684	G	A	38182684	3	1	743	1	0	0	0	0	1	0	0	0	13634	1294	45	2	3951	2	RPGR	23	38182684	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09		38182684	117087876	22	65360										
WNK3	0	genome.wustl.edu	37	chrX	54337552	54337552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	cactatcagggtcaacttacGtctttaaggtcccagatgtc	8	11	3	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	X	54337552	54337552	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.710	p.T237M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	253	0	0	282	194	40.76	-	-	-	A	54337552	G	A	54337552	3	1	743	1	0	0	0	0	1	0	0	0	17476	1159	40	1	4780	1	WNK3	23	54337552	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	16154868	54337552	100933008	23	65361										
ZDHHC15	0	genome.wustl.edu	37	chrX	74637024	74637024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	gaaggagtgtccatcaccagGgctgatgggaaaagaaaggc	15	7	1	2			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	X	74637024	74637024	G	T	SNP	ZDHHC15	ENST00000373367	human	ensembl	69_37n	-1	known	missense	c.865	p.P289T	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383	314	0	0	349	145	29.23	-	-	-	T	74637024	G	T	74637024	3	4	743	1	0	0	0	0	1	0	0	0	17701	1246	43	4	156	4	ZDHHC15	23	74637024	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	20299472	74637024	80633536	24	65362										
GPRASP2	0	genome.wustl.edu	37	chrX	101971061	101971061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	agggggccattggcggatccGcgtactgggctgaggaaaag	18	8	0	1			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	X	101971061	101971061	G	A	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1264	p.A422T	0.033	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	82	0	0	51	36	41.38	-	-	-	A	101971061	G	A	101971061	3	1	743	1	0	0	0	0	1	0	0	0	6774	1087	38	1	1266	1	GPRASP2	23	101971061	Missense_Mutation	SNP	G	TCGA-E2-A107-01A-11D-A10M-09	27334037	101971061	53299499	25	65363										
ACSL4	0	genome.wustl.edu	37	chrX	108926449	108926449	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.638739642811611	1.40689655172414	0	1.50738916256158	0.0476190476190476	0.355507088331516	0	aggctgtccttcttcccaaaCttggatacagcatggtcaaa	8	11	2	0			TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5804fc1c-063b-429d-a652-22b0de416bd6	1a964b4a-8d09-4ea3-8d10-65e252cf0ab2	X	108926449	108926449	C	T	SNP	ACSL4	ENST00000340800	human	ensembl	69_37n	-1	known	silent	c.267	p.K89	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	321	0	0	319	227	41.58	-	-	-	T	108926449	C	T	108926449	2	4	743	1	0	0	0	0	0	0	0	1	179	564	20	4		4	ACSL4	23	108926449	Silent	SNP	C	TCGA-E2-A107-01A-11D-A10M-09	6955388	108926449	46344111	26	65364										
TCEB3	0	genome.wustl.edu	37	chr1	24086048	24086048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	attaaagctttcaagaacagAttctcccgacgataaactga	6	9	2	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	24086048	24086048	A	C	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	missense	c.2382	p.R794S	1.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	108	0	0	79	9	10.23	-	-	-	C	24086048	A	C	24086048	3	2	744	1	0	0	0	0	1	0	0	0	15776	330	12	5	2424	5	TCEB3	1	24086048	Missense_Mutation	SNP	A	TCGA-E2-A108-01A-13D-A10M-09		24086048	225164573	1	65365										
WNT2B	0	genome.wustl.edu	37	chr1	113052034	113052034	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	cttctgctcctgctgctgctGacgctgccggcccgcgtaga	12	16	1	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	113052034	113052034	G	C	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	silent	c.150	p.L50	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	38	0	0	23	5	17.86	-	-	-	C	113052034	G	C	113052034	2	2	744	1	0	0	0	0	0	0	0	1	17484	1277	45	2		2	WNT2B	1	113052034	Silent	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	88965986	113052034	136198587	2	65366										
SYT6	0	genome.wustl.edu	37	chr1	114640500	114640500	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tgatctcattgtggcccactCtgagggagaaacaaaagtcc	10	10	2	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	114640500	114640500	C	T	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	splice_site	c.1365-1	e6-1	1.000	-	-	-	no_errors	SYT6	HGNC	ENSG00000134207	95	0	0	55	10	15.38	-	-	-	T	114640500	C	T	114640500	5	4	744	1	0	0	0	0	0	0	1	0	15570	927	32	2	176	2	SYT6	1	114640500	Splice_Site	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	1588466	114640500	134610121	3	65367										
CD101	0	genome.wustl.edu	37	chr1	117568312	117568312	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	cacttgcaacatgatggcttGctggagtatggggaagaggg	16	6	0	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	117568312	117568312	G	C	SNP	CD101	ENST00000256652	human	ensembl	69_37n	1	known	missense	c.2610	p.L870F	0.992	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD101	HGNC	ENSG00000134256	186	0	0	143	16	10.06	-	-	-	C	117568312	G	C	117568312	3	2	744	1	0	0	0	0	1	0	0	0	2991	1310	46	4	2640	4	CD101	1	117568312	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	2927812	117568312	131682309	4	65368										
TCHHL1	0	genome.wustl.edu	37	chr1	152058642	152058642	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttctcctacagactgcttctCaagtggtgctaaatcttgtg	8	10	3	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	152058642	152058642	C	G	SNP	TCHHL1	ENST00000368806	human	ensembl	69_37n	-1	known	missense	c.1516	p.E506Q	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	139	0	0	97	11	10.19	-	-	-	G	152058642	C	G	152058642	3	3	744	1	0	0	0	0	1	0	0	0	15796	835	29	2	1202	2	TCHHL1	1	152058642	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	34490330	152058642	97191979	5	65369										
ASH1L	0	genome.wustl.edu	37	chr1	155311856	155311856	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttgtcaagccgataatcacaGatgtacacatcttgctcctt	6	11	3	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	155311856	155311856	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	silent	c.8346	p.I2782	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	292	0	0	194	25	11.42	-	-	-	A	155311856	G	A	155311856	2	1	744	1	0	0	0	0	0	0	0	1	1045	932	33	2		2	ASH1L	1	155311856	Silent	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	3253214	155311856	93938765	6	65370										
SLAMF1	0	genome.wustl.edu	37	chr1	160582299	160582299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tggacagactctgggacaggCtctgtggcagcaacatatat	12	9	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	160582299	160582299	C	T	SNP	SLAMF1	ENST00000302035	human	ensembl	69_37n	-1	known	silent	c.936	p.E312	0.997	NULL	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like	-	no_errors	SLAMF1	HGNC	ENSG00000117090	161	0	0	115	16	12.21	-	-	-	T	160582299	C	T	160582299	2	4	744	1	0	0	0	0	0	0	0	1	14456	796	28	4		4	SLAMF1	1	160582299	Silent	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	5270443	160582299	88668322	7	65371										
EDEM3	0	genome.wustl.edu	37	chr1	184686738	184686738	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gatgttgagcccagtgtactCtgaaatctgtggtaaatgcc	11	8	2	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	184686738	184686738	C	G	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.1181	p.R394T	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	274	0	0	191	22	10.33	-	-	-	G	184686738	C	G	184686738	3	3	744	1	0	0	0	0	1	0	0	0	4948	913	32	2	1653	2	EDEM3	1	184686738	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	24104439	184686738	64563883	8	65372										
FAM5C	0	genome.wustl.edu	37	chr1	190195266	190195266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ggtttcagttattcgaagaaGattctcttccatggcttgaa	9	7	2	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	190195266	190195266	G	A	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.907	p.L303F	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	156	0	0	111	18	13.95	-	-	-	A	190195266	G	A	190195266	3	1	744	1	0	0	0	0	1	0	0	0	5639	942	33	2	1405	2	FAM5C	1	190195266	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	5508528	190195266	59055355	9	65373										
HEATR1	0	genome.wustl.edu	37	chr1	236746159	236746159	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tctttcagttgttcaggattCcaccatatatcacctacaag	5	11	4	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	236746159	236746159	C	G	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	missense	c.2439	p.W813C	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	172	0	0	101	12	10.62	-	-	-	G	236746159	C	G	236746159	3	3	744	1	0	0	0	0	1	0	0	0	7078	856	30	2	4103	2	HEATR1	1	236746159	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	46550893	236746159	12504462	10	65374										
ZNF695	0	genome.wustl.edu	37	chr1	247150838	247150838	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aaagactttgccacattcttCacacttgtagggtttctctc	6	11	3	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	247150838	247150838	C	A	SNP	ZNF695	ENST00000339986	human	ensembl	69_37n	-1	known	nonsense	c.979	p.E327*	0.022	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	116	0	0	57	10	14.93	-	-	-	A	247150838	C	A	247150838	4	1	744	1	0	0	0	0	0	1	0	0	18194	835	29	2	572	2	ZNF695	1	247150838	Nonsense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	10404679	247150838	2099783	11	65375										
TRIM58	0	genome.wustl.edu	37	chr1	248028177	248028177	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gtccagcagagcaaggccctGaaggagctggcggatgagct	16	10	0	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	1	248028177	248028177	G	A	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	silent	c.687	p.L229	0.987	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	36	0	0	27	8	22.86	-	-	-	A	248028177	G	A	248028177	2	1	744	1	0	0	0	0	0	0	0	1	16627	1277	45	2		2	TRIM58	1	248028177	Silent	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	877339	248028177	1222444	12	65376										
FSHR	0	genome.wustl.edu	37	chr2	49217745	49217745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	atgaatcttgtgaacatctgGaaggtgcttaatacctgtgt	10	6	2	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	2	49217745	49217745	G	A	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.406	p.P136S	1.000	prints_FSH_rcpt,prints_TSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	298	1	0.33	234	28	10.69	-	-	-	A	49217745	G	A	49217745	3	1	744	1	0	0	0	0	1	0	0	0	6122	1174	41	2	1705	2	FSHR	2	49217745	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09		49217745	193981628	13	65377										
TLR10	0	genome.wustl.edu	37	chr4	38775802	38775802	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aaattaaatgcaatatttagTtctcgtaaggccatcagatg	7	6	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	4	38775802	38775802	T	C	SNP	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	silent	c.1410	p.E470	0.861	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	78	0	0	42	7	14.29	-	-	-	C	38775802	T	C	38775802	2	2	744	1	0	0	0	0	0	0	0	1	16045	1722	60	5		5	TLR10	4	38775802	Silent	SNP	T	TCGA-E2-A108-01A-13D-A10M-09		38775802	152378474	14	65378										
GRXCR1	0	genome.wustl.edu	37	chr4	42964964	42964964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gatttataccacctgccttcGtgtggtccggacaacctttg	9	12	0	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	4	42964964	42964964	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	1	known	missense	c.440	p.R147H	1.000	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	226	0	0	169	28	14.21	-	-	-	A	42964964	G	A	42964964	3	1	744	1	0	0	0	0	1	0	0	0	6863	1145	40	1	446	1	GRXCR1	4	42964964	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	4189162	42964964	148189312	15	65379										
INTU	0	genome.wustl.edu	37	chr4	128564824	128564824	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aaaatgagattatcattgaaGatgactacaaagaaagaaaa	7	3	1	6			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	4	128564824	128564824	G	C	SNP	INTU	ENST00000335251	human	ensembl	69_37n	1	known	missense	c.295	p.D99H	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	84	0	0	57	7	10.94	-	-	-	C	128564824	G	C	128564824	3	2	744	1	0	0	0	0	1	0	0	0	7840	942	33	2	301	2	INTU	4	128564824	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	85599860	128564824	62589452	16	65380										
NDFIP1	0	genome.wustl.edu	37	chr5	141511786	141511786	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aaattctgcagcatattttgActacaaggatgagtctgggt	10	6	2	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	5	141511786	141511786	A	T	SNP	NDFIP1	ENST00000253814	human	ensembl	69_37n	1	known	missense	c.161	p.D54V	1.000	NULL	pfam_NEDD4/BSD2	-	no_errors	NDFIP1	HGNC	ENSG00000131507	208	0	0	137	16	10.46	-	-	-	T	141511786	A	T	141511786	3	4	744	1	0	0	0	0	1	0	0	0	10317	275	10	5	171	5	NDFIP1	5	141511786	Missense_Mutation	SNP	A	TCGA-E2-A108-01A-13D-A10M-09		141511786	39403474	17	65381										
ATP6V1B2	0	genome.wustl.edu	37	chr8	20067922	20067922	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gagtttactggggatattctCcgaacaccggtgtctgagga	13	8	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	8	20067922	20067922	C	G	SNP	ATP6V1B2	ENST00000519667	human	ensembl	69_37n	1	putative	missense	c.325	p.P109A	0.998	NULL	pfam_ATPase_F1/V1/A1-cplx_a/bsu_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP6V1B2	HGNC	ENSG00000147416	304	0	0	191	23	10.75	-	-	-	G	20067922	C	G	20067922	3	3	744	1	0	0	0	0	1	0	0	0	1183	842	30	2	371	2	ATP6V1B2	8	20067922	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		20067922	126296100	18	65382										
PTK2B	0	genome.wustl.edu	37	chr8	27293815	27293815	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	atgtggtcctgaatcgtattCttggggaaggcttttttggg	14	5	1	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	8	27293815	27293815	C	A	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	1	known	missense	c.1291	p.L431I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	359	0	0	207	35	14.46	-	-	-	A	27293815	C	A	27293815	3	1	744	1	0	0	0	0	1	0	0	0	12844	913	32	2	1345	2	PTK2B	8	27293815	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	7225893	27293815	119070207	19	65383										
C9orf41	0	genome.wustl.edu	37	chr9	77631273	77631273	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttcccagtttcactccagtcTctcacaaactgtttcagcgt	5	14	4	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	9	77631273	77631273	T	C	SNP	C9orf41	ENST00000376834	human	ensembl	69_37n	-1	known	silent	c.501	p.R167	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	410	0	0	220	40	15.38	-	-	-	C	77631273	T	C	77631273	2	2	744	1	0	0	0	0	0	0	0	1	2507	1548	54	5		5	C9orf41	9	77631273	Silent	SNP	T	TCGA-E2-A108-01A-13D-A10M-09		77631273	63582158	20	65384										
STX17	0	genome.wustl.edu	37	chr9	102677570	102677570	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tacgccgtcttgaaccagctAtccagaaattcattaagata	6	10	2	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	9	102677570	102677570	A	G	SNP	STX17	ENST00000259400	human	ensembl	69_37n	1	known	missense	c.49	p.I17V	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874	248	0	0	150	21	12.28	-	-	-	G	102677570	A	G	102677570	3	3	744	1	0	0	0	0	1	0	0	0	15431	449	16	5	51	5	STX17	9	102677570	Missense_Mutation	SNP	A	TCGA-E2-A108-01A-13D-A10M-09	25046297	102677570	38535861	21	65385										
PFKFB3	0	genome.wustl.edu	37	chr10	6262763	6262763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tctacctgtgccggcacggcGagaacgagcacaacctccag	11	15	1	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	10	6262763	6262763	G	A	SNP	PFKFB3	ENST00000540253	human	ensembl	69_37n	1	known	missense	c.808	p.E270K	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525	70	0	0	48	9	15.79	-	-	-	A	6262763	G	A	6262763	3	1	744	1	0	0	0	0	1	0	0	0	11836	1059	37	1	816	1	PFKFB3	10	6262763	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09		6262763	129271984	22	65386										
POLR3A	0	genome.wustl.edu	37	chr10	79784369	79784369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aatggctgtttcaaaagactGaaggaaatttgatacaatgg	10	4	1	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	10	79784369	79784369	G	C	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	missense	c.583	p.Q195E	1.000	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	276	0	0	185	26	12.32	-	-	-	C	79784369	G	C	79784369	3	2	744	1	0	0	0	0	1	0	0	0	12302	1299	45	2	3697	2	POLR3A	10	79784369	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	73521606	79784369	55750378	23	65387										
CCDC34	0	genome.wustl.edu	37	chr11	27379074	27379074	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gttcttcttggttattttctGattcaacctgagtgctacaa	7	8	4	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	11	27379074	27379074	G	C	SNP	CCDC34	ENST00000328697	human	ensembl	69_37n	-1	known	nonsense	c.374	p.S125*	0.001	NULL	NULL	-	no_errors	CCDC34	HGNC	ENSG00000109881	241	0	0	195	28	12.56	-	-	-	C	27379074	G	C	27379074	4	2	744	1	0	0	0	0	0	1	0	0	2833	1294	45	2	851	2	CCDC34	11	27379074	Nonsense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09		27379074	107627442	24	65388										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57076132	57076132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gccccaaagagctccacattCtggggcgccaagtcctgggt	12	14	1	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	11	57076132	57076132	C	G	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.4053	p.Q1351H	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	57	0	0	39	6	13.33	-	-	-	G	57076132	C	G	57076132	3	3	744	1	0	0	0	0	1	0	0	0	16415	912	32	2	1160	2	TNKS1BP1	11	57076132	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	29697058	57076132	77930384	25	65389										
INTS5	0	genome.wustl.edu	37	chr11	62414645	62414645	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tccctggagaagtcccgaatGaagcgaccccgctctgattg	11	13	1	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	11	62414645	62414645	G	T	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.2907	p.F969L	1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	58	0	0	32	4	11.11	-	-	-	T	62414645	G	T	62414645	3	4	744	1	0	0	0	0	1	0	0	0	7835	1281	45	2	156	2	INTS5	11	62414645	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	5338513	62414645	72591871	26	65390			1	105		3	3	2589	G		8.026774e-06
INTS5	0	genome.wustl.edu	37	chr11	62415402	62415402	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ccaaagaagctgaaacaactGagagagtctcattgtcccca	8	11	1	4			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	11	62415402	62415402	G	A	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.2150	p.S717L	0.034	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	136	0	0	69	9	11.54	-	-	-	A	62415402	G	A	62415402	3	1	744	1	0	0	0	0	1	0	0	0	7835	1294	45	2	913	2	INTS5	11	62415402	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	757	62415402	72591114	27	65391			1	105		3	3	2589	G		8.026774e-06
INTS5	0	genome.wustl.edu	37	chr11	62417233	62417233	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	agcagggacatgagagggtgGaggtggacggaggtgaggtg	23	3	0	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	11	62417233	62417233	G	C	SNP	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	missense	c.319	p.P107A	0.995	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	158	0	0	98	12	10.91	-	-	-	C	62417233	G	C	62417233	3	2	744	1	0	0	0	0	1	0	0	0	7835	1174	41	2	2744	2	INTS5	11	62417233	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	1831	62417233	72589283	28	65392			1	105		3	3	2589	G		8.026774e-06
PHC1	0	genome.wustl.edu	37	chr12	9070338	9070338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttctagctcagggggcagctCtcggccccagatagctcaaa	11	13	4	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	12	9070338	9070338	C	G	SNP	PHC1	ENST00000251757	human	ensembl	69_37n	1	known	missense	c.65	p.S22C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_Znf_MYM,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC1	HGNC	ENSG00000111752	52	0	0	29	4	12.12	-	-	-	G	9070338	C	G	9070338	3	3	744	1	0	0	0	0	1	0	0	0	11890	913	32	2	67	2	PHC1	12	9070338	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		9070338	124781557	29	65393										
ZMYM2	0	genome.wustl.edu	37	chr13	20641001	20641001	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttactaatagggagccaagaGaaaggctgtatcaggatacc	11	7	1	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	13	20641001	20641001	G	A	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.3143	p.R1048K	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	225	0	0	205	24	10.48	-	-	-	A	20641001	G	A	20641001	3	1	744	1	0	0	0	0	1	0	0	0	17796	942	33	2	3213	2	ZMYM2	13	20641001	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09		20641001	94528877	30	65394										
ZMYM2	0	genome.wustl.edu	37	chr13	20657091	20657091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttggcactgtgtttaggcatTggaaaaaaaatcctttaacg	9	6	0	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	13	20657091	20657091	T	C	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.3739	p.W1247R	0.998	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	235	0	0	131	30	18.63	-	-	-	C	20657091	T	C	20657091	3	2	744	1	0	0	0	0	1	0	0	0	17796	1812	63	5	3821	5	ZMYM2	13	20657091	Missense_Mutation	SNP	T	TCGA-E2-A108-01A-13D-A10M-09	16090	20657091	94512787	31	65395										
EPSTI1	0	genome.wustl.edu	37	chr13	43469228	43469229	+	Frame_Shift_Ins	INS	-	-	AA													0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttgccttggagtcggtccagINSaaaagcattatttacccttt							TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	13	43469228	43469229	-	AA	INS	EPSTI1	ENST00000313640	human	ensembl	69_37n	-1	known	frame_shift_ins	c.865_864	p.L288fs	1.000:0.998	NULL	NULL	-	no_errors	EPSTI1	HGNC	ENSG00000133106	153	0	0	107	12	10.08	-	-	-	AA	43469229	-	AA	43469228	7	5	744	1	0	1	1	0	0	0	0	0	5235	933	33	0	379	0	EPSTI1	13	43469228	Frame_Shift_Ins	INS	-	TCGA-E2-A108-01A-13D-A10M-09	22812137	43469228	71700650	32	65396										
SPTB	0	genome.wustl.edu	37	chr14	65263386	65263386	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tgccgaatgagctcatttctCagggccagctcccgccgata	10	14	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	14	65263386	65263386	C	T	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	silent	c.1230	p.L410	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	107	0	0	53	6	10.17	-	-	-	T	65263386	C	T	65263386	2	4	744	1	0	0	0	0	0	0	0	1	15209	813	29	2		2	SPTB	14	65263386	Silent	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		65263386	42086154	33	65397										
TMEM87A	0	genome.wustl.edu	37	chr15	42564268	42564268	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ttcaaaaactcacacttcagGaagatagtggtatttctgaa	7	7	4	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	15	42564268	42564268	G	C	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.198	p.F66L	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	95	0	0	69	8	10.39	-	-	-	C	42564268	G	C	42564268	3	2	744	1	0	0	0	0	1	0	0	0	16305	1165	41	2	1591	2	TMEM87A	15	42564268	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09		42564268	59967124	34	65398										
UBR1	0	genome.wustl.edu	37	chr15	43244537	43244537	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aaaaatgcaagctccaacctCttccccgttcacaatttcct	3	15	2	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	15	43244537	43244537	C	G	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.4945	p.E1649Q	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	137	0	0	83	11	11.58	-	-	-	G	43244537	C	G	43244537	3	3	744	1	0	0	0	0	1	0	0	0	16998	922	32	2	316	2	UBR1	15	43244537	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	680269	43244537	59286855	35	65399										
AGPHD1	0	genome.wustl.edu	37	chr15	78825858	78825858	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	acttgtcatggctgcatactCttgccagctatacccagaga	8	12	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	15	78825858	78825858	C	G	SNP	AGPHD1	ENST00000388988	human	ensembl	69_37n	1	known	missense	c.968	p.S323C	1.000	NULL	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	AGPHD1	HGNC	ENSG00000188266	446	0	0	283	33	10.38	-	-	-	G	78825858	C	G	78825858	3	3	744	1	0	0	0	0	1	0	0	0	393	913	32	2	982	2	AGPHD1	15	78825858	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	35581321	78825858	23705534	36	65400										
HMOX2	0	genome.wustl.edu	37	chr16	4559694	4559694	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	gtgctgaggaagcccagcctCcagttcatcctggccgctgg	13	14	1	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	16	4559694	4559694	C	G	SNP	HMOX2	ENST00000219700	human	ensembl	69_37n	1	known	silent	c.888	p.L296	0.990	NULL	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX2	HGNC	ENSG00000103415	81	0	0	51	13	20.31	-	-	-	G	4559694	C	G	4559694	2	3	744	1	0	0	0	0	0	0	0	1	7295	842	30	2		2	HMOX2	16	4559694	Silent	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		4559694	85795059	37	65401										
TXNDC11	0	genome.wustl.edu	37	chr16	11782228	11782228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	attaaatgctgagacgggaaCtgggcagagccacttccaat	11	9	0	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	16	11782228	11782228	C	A	SNP	TXNDC11	ENST00000356957	human	ensembl	69_37n	-1	known	missense	c.2055	p.Q685H	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066	144	0	0	93	14	13.08	-	-	-	A	11782228	C	A	11782228	3	1	744	1	0	0	0	0	1	0	0	0	16889	564	20	4	918	4	TXNDC11	16	11782228	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	7222534	11782228	78572525	38	65402										
ZNF785	0	genome.wustl.edu	37	chr16	30596468	30596468	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tcctgtccttggcccctgctGaaagctgcagagctctcacc	9	16	1	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	16	30596468	30596468	G	A	SNP	ZNF785	ENST00000395216	human	ensembl	69_37n	-1	known	silent	c.309	p.F103	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	82	0	0	67	8	10.67	-	-	-	A	30596468	G	A	30596468	2	1	744	1	0	0	0	0	0	0	0	1	18250	1281	45	2		2	ZNF785	16	30596468	Silent	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	18814240	30596468	59758285	39	65403										
KCTD19	0	genome.wustl.edu	37	chr16	67325298	67325298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	atccatgatgatgtcagccaGgaagcagtgacatttctgtg	11	8	2	3			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	16	67325298	67325298	G	T	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	missense	c.2479	p.L827M	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	146	0	0	69	11	13.75	-	-	-	T	67325298	G	T	67325298	3	4	744	1	0	0	0	0	1	0	0	0	8160	991	35	4	313	4	KCTD19	16	67325298	Missense_Mutation	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	36728830	67325298	23029455	40	65404										
TP53	0	genome.wustl.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	196	0	0	122	16	11.59	-	-	-	T	7577120	C	T	7577120	3	4	744	1	0	0	0	0	1	0	0	0	16477	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		7577120	73618090	41	65405										
CNTNAP1	0	genome.wustl.edu	37	chr17	40849571	40849571	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ctgggcctgcctctctctcaGagacaggagtcattgacccg	11	14	3	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	17	40849571	40849571	G	C	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	splice_site	c.3569-1	e22-1	1.000	-	-	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	105	0	0	61	9	12.86	-	-	-	C	40849571	G	C	40849571	5	2	744	1	0	0	0	0	0	0	1	0	3676	956	33	2	3654	2	CNTNAP1	17	40849571	Splice_Site	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	33272451	40849571	40345639	42	65406										
SNX11	0	genome.wustl.edu	37	chr17	46189979	46189979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	ggacccccgagtgcagaatgAgggctcctggaactcttatg	13	11	1	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	17	46189979	46189979	A	G	SNP	SNX11	ENST00000359238	human	ensembl	69_37n	1	known	missense	c.86	p.E29G	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX11	HGNC	ENSG00000002919	182	0	0	137	25	15.43	-	-	-	G	46189979	A	G	46189979	3	3	744	1	0	0	0	0	1	0	0	0	14971	304	11	5	92	5	SNX11	17	46189979	Missense_Mutation	SNP	A	TCGA-E2-A108-01A-13D-A10M-09	5340408	46189979	35005231	43	65407										
LPIN2	0	genome.wustl.edu	37	chr18	2960806	2960806	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	agttccttcacagtgacaatCacctgcccagccagctgtcc	7	16	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	18	2960806	2960806	C	T	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	silent	c.33	p.V11	1.000	pfam_Lipin_N	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	118	0	0	70	22	23.91	-	-	-	T	2960806	C	T	2960806	2	4	744	1	0	0	0	0	0	0	0	1	8985	813	29	2		2	LPIN2	18	2960806	Silent	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		2960806	75116442	44	65408										
LAMA1	0	genome.wustl.edu	37	chr18	7032992	7032992	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	agaagcgtcacctcacaggaGgtccctgtgtagccttgcgg	13	12	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	18	7032992	7032992	G	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.2154	p.T718	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	95	0	0	65	8	10.96	-	-	-	C	7032992	G	C	7032992	2	2	744	1	0	0	0	0	0	0	0	1	8659	987	35	4		4	LAMA1	18	7032992	Silent	SNP	G	TCGA-E2-A108-01A-13D-A10M-09	4072186	7032992	71044256	45	65409										
EPB41L1	0	genome.wustl.edu	37	chr20	34778680	34778680	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	cacccttctttgagcgttctTccagcaaacggtacaccatg	7	14	2	1			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	20	34778680	34778680	T	G	SNP	EPB41L1	ENST00000338074	human	ensembl	69_37n	1	known	missense	c.1261	p.S421A	0.998	pfam_FERM-adjacent,pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L1	HGNC	ENSG00000088367	96	0	0	70	8	10.26	-	-	-	G	34778680	T	G	34778680	3	3	744	1	0	0	0	0	1	0	0	0	5189	1783	62	5	1299	5	EPB41L1	20	34778680	Missense_Mutation	SNP	T	TCGA-E2-A108-01A-13D-A10M-09		34778680	28246840	46	65410										
CD40	0	genome.wustl.edu	37	chr20	44750513	44750513	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	aacagtacctaataaacagtCagtgctgttctttgtgccag	8	9	2	0			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	20	44750513	44750513	C	T	SNP	CD40	ENST00000372285	human	ensembl	69_37n	1	known	nonsense	c.106	p.Q36*	0.005	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_5,prints_Fas_rcpt	-	no_errors	CD40	HGNC	ENSG00000101017	182	0	0	117	14	10.61	-	-	-	T	44750513	C	T	44750513	4	4	744	1	0	0	0	0	0	1	0	0	3044	827	29	2	112	2	CD40	20	44750513	Nonsense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09	9971833	44750513	18275007	47	65411										
SMC1A	0	genome.wustl.edu	37	chrX	53430747	53430747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.458333333333333	22	3.54447068028998e-08	3.71959581378564	3.63061026800129	3.83231083844581	0.776130071924499	1	16	caagtctttcatttccctctCtcggctctgaatgatcctct	5	14	5	2			TCGA-E2-A108-01A-13D-A10M-09	TCGA-E2-A108-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e3e394d4-2593-4bf9-86e4-2e79d8cb8dab	ddbcaa72-c832-4944-aebe-2324670d568f	X	53430747	53430747	C	G	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.2275	p.E759Q	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	520	1	0.19	266	36	11.92	-	-	-	G	53430747	C	G	53430747	3	3	744	1	0	0	0	0	1	0	0	0	14870	922	32	2	1474	2	SMC1A	23	53430747	Missense_Mutation	SNP	C	TCGA-E2-A108-01A-13D-A10M-09		53430747	101839813	48	65412										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17964425	17964425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acgcctcttccaggagctgcAggacctgcagaaggacctgg	13	13	1	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	17964425	17964425	A	G	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	missense	c.1970	p.Q657R	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	191	0	0	156	52	25	-	-	-	G	17964425	A	G	17964425	3	3	745	1	0	0	0	0	1	0	0	0	897	188	7	5	2040	5	ARHGEF10L	1	17964425	Missense_Mutation	SNP	A	TCGA-E2-A109-01A-11D-A10M-09		17964425	231286196	1	65413										
ECE1	0	genome.wustl.edu	37	chr1	21585236	21585238	+	In_Frame_Del	DEL	AGA	AGA	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	atcggcactgacatagacagAgaagaagggtgaggtgcggt							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	21585236	21585238	AGA	-	DEL	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	in_frame_del	c.712_710	p.F237in_frame_del	1.000:1.000:1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	390	0	0	281	235	45.19	-	-	-	-	21585238	AGA	-	21585236	7	5	745	1	0	1	0	1	0	0	0	0	4924	304	11	0	1656	0	ECE1	1	21585236	In_Frame_Del	DEL	AGA	TCGA-E2-A109-01A-11D-A10M-09	3620811	21585236	227665385	2	65414										
UBXN11	0	genome.wustl.edu	37	chr1	26608867	26608867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	actggggccgggaccgggacCgggactggggccgggaccgg	22	12	0	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	26608867	26608867	C	A	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.1486	p.G496C	0.010	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	8	0	0	5	6	54.55	-	-	-	A	26608867	C	A	26608867	3	1	745	1	0	0	0	0	1	0	0	0	17010	652	23	3	80	3	UBXN11	1	26608867	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	5023631	26608867	222641754	3	65415										
ZFYVE9	0	genome.wustl.edu	37	chr1	52703400	52703400	+	Frame_Shift_Del	DEL	G	G	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tccagagattgccacaatgtGgattgatgaaaatgctgttg							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	52703400	52703400	G	-	DEL	ZFYVE9	ENST00000287727	human	ensembl	69_37n	1	known	frame_shift_del	c.311	p.W104fs	1.000	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	116	0	0	14	2	12.5	-	-	-	-	52703400	G	-	52703400	7	5	745	1	0	1	0	1	0	0	0	0	17767	1357	47	0	317	0	ZFYVE9	1	52703400	Frame_Shift_Del	DEL	G	TCGA-E2-A109-01A-11D-A10M-09	26094533	52703400	196547221	4	65416										
C1orf194	0	genome.wustl.edu	37	chr1	109649741	109649741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gaagtccaggtcatcctttgGtatctacagaagtcagtccc	9	11	3	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	109649741	109649741	G	T	SNP	C1orf194	ENST00000369948	human	ensembl	69_37n	-1	known	missense	c.202	p.P68T	1.000	pfam_DUF3695	pfam_DUF3695	-	no_errors	C1orf194	HGNC	ENSG00000179902	261	0	0	218	65	22.97	-	-	-	T	109649741	G	T	109649741	3	4	745	1	0	0	0	0	1	0	0	0	2044	1261	44	4	319	4	C1orf194	1	109649741	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	56946341	109649741	139600880	5	65417										
CSDE1	0	genome.wustl.edu	37	chr1	115276687	115276687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acccttaaattcactatagtGaaagaatatctcttttacaa	3	8	2	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	115276687	115276687	G	C	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.679	p.H227D	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	111	0	0	21	23	52.27	-	-	-	C	115276687	G	C	115276687	3	2	745	1	0	0	0	0	1	0	0	0	3961	1290	45	2	1814	2	CSDE1	1	115276687	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	5626946	115276687	133973934	6	65418										
C1orf226	0	genome.wustl.edu	37	chr1	162351928	162351929	+	Frame_Shift_Del	DEL	GA	GA	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	agcctgggcagtgtgggtgtGacagagatcaacaagactgc							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	162351928	162351929	GA	-	DEL	C1orf226	ENST00000426197	human	ensembl	69_37n	1	known	frame_shift_del	c.366_367	p.T123fs	0.913:0.931	NULL	NULL	-	no_errors	C1orf226	HGNC	ENSG00000239887	21	0	0	41	18	30	-	-	-	-	162351929	GA	-	162351928	7	5	745	1	0	1	0	1	0	0	0	0	2052	1277	45	0	372	0	C1orf226	1	162351928	Frame_Shift_Del	DEL	GA	TCGA-E2-A109-01A-11D-A10M-09	47075241	162351928	86898693	7	65419										
ASPM	0	genome.wustl.edu	37	chr1	197073453	197073454	+	Frame_Shift_Ins	INS	-	-	C													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cctggcttgcatccctctatINSatgcagactgcagcacaatg							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	197073453	197073454	-	C	INS	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4928_4927	p.Y1643fs	0.017:0.050	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	78	0	0	3	3	50	-	-	-	C	197073454	-	C	197073453	7	5	745	1	0	1	1	0	0	0	0	0	1060	1406	49	0	5549	0	ASPM	1	197073453	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	34721525	197073453	52177168	8	65420										
CDK18	0	genome.wustl.edu	37	chr1	205492722	205492722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ccctggcgtgcagttccagcGgcggcagaaccagcgccgct	14	16	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	205492722	205492722	G	A	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	missense	c.242	p.R81Q	0.244	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	20	0	0	29	21	42	-	-	-	A	205492722	G	A	205492722	3	1	745	1	0	0	0	0	1	0	0	0	3163	1116	39	1	248	1	CDK18	1	205492722	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	8419269	205492722	43757899	9	65421										
PCNXL2	0	genome.wustl.edu	37	chr1	233398910	233398911	+	Splice_Site	INS	-	-	AAA													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tcgcatttggaggaaaagccINStgaagaaaggaaaagacaga							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	1	233398910	233398911	-	AAA	INS	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	splice_site_ins	c.154-2_154-1	e2-1	1.000:0.996	-	-	-	no_errors	PCNXL2	HGNC	ENSG00000135749	70	0	0	17	5	22.73	-	-	-	AAA	233398911	-	AAA	233398910	8	5	745	1	0	1	1	0	0	0	1	0	11665	695	24	0	6392	0	PCNXL2	1	233398910	Splice_Site	INS	-	TCGA-E2-A109-01A-11D-A10M-09	27906188	233398910	15851711	10	65422										
ITSN2	0	genome.wustl.edu	37	chr2	24494778	24494779	+	Frame_Shift_Ins	INS	-	-	A													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ctcctttctaagattttcttINStccataagttttcttttcct							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	24494778	24494779	-	A	INS	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2114_2113	p.K705fs	0.829:0.981	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	66	0	0	13	2	13.33	-	-	-	A	24494779	-	A	24494778	7	5	745	1	0	1	1	0	0	0	0	0	7981	1841	64	0	3118	0	ITSN2	2	24494778	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09		24494778	218704595	11	65423			1	106		2	2	21	N	-	4.974561e-05
ITSN2	0	genome.wustl.edu	37	chr2	24494798	24494799	+	Frame_Shift_Ins	INS	-	-	C													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tccataagttttcttttcctINStgctttgctttcctttacat							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	24494798	24494799	-	C	INS	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2094_2093	p.G699fs	1.000:1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	52	0	0	11	2	15.38	-	-	-	C	24494799	-	C	24494798	7	5	745	1	0	1	1	0	0	0	0	0	7981	1606	56	0	3138	0	ITSN2	2	24494798	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	20	24494798	218704575	12	65424			1	106		2	2	21	N	-	4.974561e-05
ZNF512	0	genome.wustl.edu	37	chr2	27806578	27806579	+	Frame_Shift_Ins	INS	-	-	A													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gcacgaggatcgtgggagctINSaagaagtaagtgaggttttc							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	27806578	27806579	-	A	INS	ZNF512	ENST00000355467	human	ensembl	69_37n	1	known	frame_shift_ins	c.84_85	p.N29fs	0.988:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943	424	0	0	288	162	36	-	-	-	A	27806579	-	A	27806578	7	5	745	1	0	1	1	0	0	0	0	0	18052	1509	53	0	90	0	ZNF512	2	27806578	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	3311780	27806578	215392795	13	65425										
XDH	0	genome.wustl.edu	37	chr2	31605877	31605877	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	agcgactcaccgccacagacTtgacttgcttcccagcaaac	7	16	1	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	31605877	31605877	T	A	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.1028	p.K343M	1.000	pfam_Mopterin_DH_FAD-bd,superfamily_FAD-bd_2,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	72	0	0	50	37	42.53	-	-	-	A	31605877	T	A	31605877	3	1	745	1	0	0	0	0	1	0	0	0	17523	1609	56	5	3077	5	XDH	2	31605877	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09	3799299	31605877	211593496	14	65426										
EFEMP1	0	genome.wustl.edu	37	chr2	56149540	56149540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tcctgtgacttgaccagcgcCagagtcagcatagttaggaa	11	10	1	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	56149540	56149540	C	T	SNP	EFEMP1	ENST00000355426	human	ensembl	69_37n	-1	known	silent	c.36	p.L12	1.000	NULL	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	287	0	0	333	55	14.18	-	-	-	T	56149540	C	T	56149540	2	4	745	1	0	0	0	0	0	0	0	1	4976	581	21	4		4	EFEMP1	2	56149540	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	24543663	56149540	187049833	15	65427										
UGT1A4	0	genome.wustl.edu	37	chr2	234681013	234681013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tttgtgatgaggcacaagggCgcgccacacctgcgccccgc	13	15	0	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	2	234681013	234681013	C	T	SNP	UGT1A4	ENST00000373409	human	ensembl	69_37n	1	known	silent	c.1413	p.G471	0.978	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	216	0	0	161	145	47.23	-	-	-	T	234681013	C	T	234681013	2	4	745	1	0	0	0	0	0	0	0	1	17044	755	27	1		1	UGT1A4	2	234681013	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	178531473	234681013	8518360	16	65428										
STAC	0	genome.wustl.edu	37	chr3	36547281	36547281	+	Frame_Shift_Del	DEL	C	C	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acagatgaacacctatgttgCcttgtacaaatttgtaccac							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	36547281	36547281	C	-	DEL	STAC	ENST00000273183	human	ensembl	69_37n	1	known	frame_shift_del	c.875	p.L293fs	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	STAC	HGNC	ENSG00000144681	67	0	0	10	2	16.67	-	-	-	-	36547281	C	-	36547281	7	5	745	1	0	1	0	1	0	0	0	0	15330	739	26	0	905	0	STAC	3	36547281	Frame_Shift_Del	DEL	C	TCGA-E2-A109-01A-11D-A10M-09		36547281	161475149	17	65429										
DHX30	0	genome.wustl.edu	37	chr3	47891166	47891166	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ggctgacgtatttcatggcaGtcaagtccaatggcagcgtc	12	10	2	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	47891166	47891166	G	C	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	missense	c.3238	p.V1080L	0.994	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	164	0	0	158	108	40.6	-	-	-	C	47891166	G	C	47891166	3	2	745	1	0	0	0	0	1	0	0	0	4540	1029	36	4	3323	4	DHX30	3	47891166	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	11343885	47891166	150131264	18	65430										
RNF123	0	genome.wustl.edu	37	chr3	49758302	49758302	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ggcgcacctgacctctgcatCtgcccaggcagcagctgcct	11	17	2	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	49758302	49758302	C	T	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.3713	p.S1238F	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	109	0	0	140	32	18.6	-	-	-	T	49758302	C	T	49758302	3	4	745	1	0	0	0	0	1	0	0	0	13519	913	32	2	3855	2	RNF123	3	49758302	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	1867136	49758302	148264128	19	65431										
KLF15	0	genome.wustl.edu	37	chr3	126062722	126062722	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gcgcctgtgccgcgacagctCgtcagagcgcgagaacctgc	14	15	1	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	126062722	126062722	C	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	nonsense	c.1099	p.E367*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	28	0	0	34	33	49.25	-	-	-	A	126062722	C	A	126062722	4	1	745	1	0	0	0	0	0	1	0	0	8396	893	31	3	155	3	KLF15	3	126062722	Nonsense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	76304420	126062722	71959708	20	65432										
SOX14	0	genome.wustl.edu	37	chr3	137484051	137484051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ctactccctgctggaccccgCgcagtttagctcgagcgcca	10	17	0	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	137484051	137484051	C	T	SNP	SOX14	ENST00000306087	human	ensembl	69_37n	1	known	missense	c.425	p.A142V	1.000	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX14	HGNC	ENSG00000168875	13	0	0	17	6	26.09	-	-	-	T	137484051	C	T	137484051	3	4	745	1	0	0	0	0	1	0	0	0	15034	768	27	1	427	1	SOX14	3	137484051	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	11421329	137484051	60538379	21	65433										
SHOX2	0	genome.wustl.edu	37	chr3	157823481	157823481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tcgttaccctccgtcagtcgCgggctgcccggctccctgct	11	18	1	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	157823481	157823481	C	T	SNP	SHOX2	ENST00000555977	human	ensembl	69_37n	-1	putative	missense	c.43	p.A15T	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif	-	no_start_codon:pseudogene:no_stop_codon	SHOX2	HGNC	ENSG00000168779	21	0	0	21	14	40	-	-	-	T	157823481	C	T	157823481	3	4	745	1	0	0	0	0	1	0	0	0	14378	755	27	1	758	1	SHOX2	3	157823481	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	20339430	157823481	40198949	22	65434										
ZBBX	0	genome.wustl.edu	37	chr3	167045735	167045736	+	Frame_Shift_Ins	INS	-	-	C													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aaaaaaagccataccttttaINSctgctgcatgtaaattctgt							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	167045735	167045736	-	C	INS	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	frame_shift_ins	c.857_856	p.V286fs	0.211:0.086	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	170	0	0	17	2	10.53	-	-	-	C	167045736	-	C	167045735	7	5	745	1	0	1	1	0	0	0	0	0	17613	391	14	0	1589	0	ZBBX	3	167045735	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	9222254	167045735	30976695	23	65435										
SKIL	0	genome.wustl.edu	37	chr3	170102343	170102343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	actacttatacatgtgtgatAaagtggttgccccaaatgtg	9	7	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	170102343	170102343	A	G	SNP	SKIL	ENST00000259119	human	ensembl	69_37n	1	known	missense	c.1219	p.K407E	1.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	157	0	0	101	63	38.41	-	-	-	G	170102343	A	G	170102343	3	3	745	1	0	0	0	0	1	0	0	0	14447	363	13	5	1229	5	SKIL	3	170102343	Missense_Mutation	SNP	A	TCGA-E2-A109-01A-11D-A10M-09	3056608	170102343	27920087	24	65436										
HTR3D	0	genome.wustl.edu	37	chr3	183756031	183756031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	catcacatgcttcactagtaCgtcctcatccatcaagagac	5	14	4	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	183756031	183756031	C	T	SNP	HTR3D	ENST00000428798	human	ensembl	69_37n	1	known	missense	c.739	p.R247C	0.702	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd	-	no_errors	HTR3D	HGNC	ENSG00000186090	398	0	0	488	115	19.07	-	-	-	T	183756031	C	T	183756031	3	4	745	1	0	0	0	0	1	0	0	0	7501	536	19	1	1041	1	HTR3D	3	183756031	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	13653688	183756031	14266399	25	65437										
LEPREL1	0	genome.wustl.edu	37	chr3	189681772	189681772	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ctctataaagtgggtccaagGtgaaccacagagccacagca	10	11	1	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	3	189681772	189681772	G	C	SNP	LEPREL1	ENST00000319332	human	ensembl	69_37n	-1	known	missense	c.2009	p.T670S	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530	92	0	0	23	9	28.12	-	-	-	C	189681772	G	C	189681772	3	2	745	1	0	0	0	0	1	0	0	0	8784	1261	44	4	125	4	LEPREL1	3	189681772	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	5925741	189681772	8340658	26	65438										
LPHN3	0	genome.wustl.edu	37	chr4	62936207	62936207	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aatctgatgctcctttgctgCccccaagagtatactccacc	6	15	1	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	4	62936207	62936207	C	A	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.4168	p.P1390T	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	106	0	0	39	14	26.42	-	-	-	A	62936207	C	A	62936207	3	1	745	1	0	0	0	0	1	0	0	0	8983	739	26	4	4081	4	LPHN3	4	62936207	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09		62936207	128218069	27	65439										
SPATA4	0	genome.wustl.edu	37	chr4	177113974	177113974	+	Frame_Shift_Del	DEL	A	A	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ctatagtccgtgaaattcacAaagtcatcctggatactttt							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	4	177113974	177113974	A	-	DEL	SPATA4	ENST00000280191	human	ensembl	69_37n	-1	known	frame_shift_del	c.492	p.F164fs	0.000	pfam_DUF1042	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628	37	0	0	25	13	34.21	-	-	-	-	177113974	A	-	177113974	7	5	745	1	0	1	0	1	0	0	0	0	15101	127	5	0	437	0	SPATA4	4	177113974	Frame_Shift_Del	DEL	A	TCGA-E2-A109-01A-11D-A10M-09	114177767	177113974	14040302	28	65440										
PCDHB12	0	genome.wustl.edu	37	chr5	140590645	140590645	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aggagcagggcggccccggtCggtcgctgctcggtgcctga	18	13	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	5	140590645	140590645	C	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	silent	c.2166	p.V722	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	47	0	0	48	31	39.24	-	-	-	A	140590645	C	A	140590645	2	1	745	1	0	0	0	0	0	0	0	1	11610	871	31	3		3	PCDHB12	5	140590645	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09		140590645	40324615	29	65441										
HAVCR1	0	genome.wustl.edu	37	chr5	156456795	156456795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tagatattgtcttctgcttgGacttccttttcaactgcatt	6	9	3	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	5	156456795	156456795	G	A	SNP	HAVCR1	ENST00000425854	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337F	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	HAVCR1	HGNC	ENSG00000113249	300	1	0.33	124	14	10.14	-	-	-	A	156456795	G	A	156456795	3	1	745	1	0	0	0	0	1	0	0	0	7024	1161	41	2	54	2	HAVCR1	5	156456795	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	15866150	156456795	24458465	30	65442										
ATP10B	0	genome.wustl.edu	37	chr5	159992485	159992485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tggtcagtgaactctgggatCggcgatggctgctcctcttt	13	10	3	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	5	159992485	159992485	C	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.4361	p.R1454L	0.996	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	236	0	0	21	26	55.32	-	-	-	A	159992485	C	A	159992485	3	1	745	1	0	0	0	0	1	0	0	0	1121	884	31	3	28	3	ATP10B	5	159992485	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	3535690	159992485	20922775	31	65443										
PDE10A	0	genome.wustl.edu	37	chr6	165749696	165749696	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tggccacggcattgtagaacCcaagctgcctccatgcaaaa	9	13	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	6	165749696	165749696	C	A	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.2183	p.G728V	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	143	0	0	78	34	30.36	-	-	-	A	165749696	C	A	165749696	3	1	745	1	0	0	0	0	1	0	0	0	11703	623	22	4	194	4	PDE10A	6	165749696	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09		165749696	5365371	32	65444										
MLLT4	0	genome.wustl.edu	37	chr6	168291556	168291556	+	Frame_Shift_Del	DEL	C	C	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ttctagggattttagtctttCagttgaagaggaggccacca							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	6	168291556	168291556	C	-	DEL	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	frame_shift_del	c.1024	p.Q342fs	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	64	0	0	11	2	15.38	-	-	-	-	168291556	C	-	168291556	7	5	745	1	0	1	0	1	0	0	0	0	9700	827	29	0	1054	0	MLLT4	6	168291556	Frame_Shift_Del	DEL	C	TCGA-E2-A109-01A-11D-A10M-09	2541860	168291556	2823511	33	65445										
WBSCR17	0	genome.wustl.edu	37	chr7	71036313	71036313	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cgttcgtggtcaacaggaagTtcttcggtgaaattggtctt	12	7	3	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	7	71036313	71036313	T	A	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	missense	c.1006	p.F336I	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	463	0	0	189	95	33.45	-	-	-	A	71036313	T	A	71036313	3	1	745	1	0	0	0	0	1	0	0	0	17361	1725	60	5	1028	5	WBSCR17	7	71036313	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09		71036313	88102350	34	65446										
ZNF804B	0	genome.wustl.edu	37	chr7	88965288	88965288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	atgatcaagacagtgcaattCcaaggactacggagaaagac	10	8	1	4			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	7	88965288	88965288	C	T	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.2992	p.P998S	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	98	0	0	19	19	50	-	-	-	T	88965288	C	T	88965288	3	4	745	1	0	0	0	0	1	0	0	0	18264	855	30	2	3006	2	ZNF804B	7	88965288	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	17928975	88965288	70173375	35	65447										
ELP3	0	genome.wustl.edu	37	chr8	27995267	27995267	+	Frame_Shift_Del	DEL	C	C	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgggctgaaactctatcctaCcctggtgattcgtgggaccg							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	8	27995267	27995267	C	-	DEL	ELP3	ENST00000256398	human	ensembl	69_37n	1	known	frame_shift_del	c.959	p.L321fs	1.000	smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014	115	0	0	16	2	11.11	-	-	-	-	27995267	C	-	27995267	7	5	745	1	0	1	0	1	0	0	0	0	5118	507	18	0	997	0	ELP3	8	27995267	Frame_Shift_Del	DEL	C	TCGA-E2-A109-01A-11D-A10M-09		27995267	118368755	36	65448										
WISP1	0	genome.wustl.edu	37	chr8	134232988	134232988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tctggtgcccccacccgcggCgcgtgagcatacctggccac	12	18	1	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	8	134232988	134232988	C	T	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	1	known	missense	c.514	p.R172C	0.007	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	49	0	0	170	116	40.56	-	-	-	T	134232988	C	T	134232988	3	4	745	1	0	0	0	0	1	0	0	0	17469	768	27	1	524	1	WISP1	8	134232988	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	106237721	134232988	12131034	37	65449										
IFT74	0	genome.wustl.edu	37	chr9	26984316	26984316	+	Frame_Shift_Del	DEL	A	A	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	agaagggaatagaaatgtacAatcaagagaattcagtatat							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	9	26984316	26984316	A	-	DEL	IFT74	ENST00000380062	human	ensembl	69_37n	1	known	frame_shift_del	c.367	p.N123fs	1.000	NULL	NULL	-	no_errors	IFT74	HGNC	ENSG00000096872	44	0	0	3	2	40	-	-	-	-	26984316	A	-	26984316	7	5	745	1	0	1	0	1	0	0	0	0	7617	130	5	0	381	0	IFT74	9	26984316	Frame_Shift_Del	DEL	A	TCGA-E2-A109-01A-11D-A10M-09		26984316	114229115	38	65450										
TMEM8B	0	genome.wustl.edu	37	chr9	35853682	35853682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgctcattgcgggcagtgtgGgcttcctgctgccccctcgt	13	14	1	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	9	35853682	35853682	G	T	SNP	TMEM8B	ENST00000377988	human	ensembl	69_37n	1	known	missense	c.1264	p.G422C	1.000	NULL	pfam_DUF3522	-	no_errors	TMEM8B	HGNC	ENSG00000137103	126	0	0	54	78	59.09	-	-	-	T	35853682	G	T	35853682	3	4	745	1	0	0	0	0	1	0	0	0	16310	1232	43	4	1492	4	TMEM8B	9	35853682	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	8869366	35853682	105359749	39	65451										
DIRAS2	0	genome.wustl.edu	37	chr9	93375798	93375798	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acgtcccctttgatctcgcaGatttgttcgtagatgggctt	10	10	1	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	9	93375798	93375798	G	A	SNP	DIRAS2	ENST00000375765	human	ensembl	69_37n	-1	known	silent	c.312	p.I104	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS2	HGNC	ENSG00000165023	88	0	0	89	27	23.28	-	-	-	A	93375798	G	A	93375798	2	1	745	1	0	0	0	0	0	0	0	1	4567	932	33	2		2	DIRAS2	9	93375798	Silent	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	57522116	93375798	47837633	40	65452										
AKNA	0	genome.wustl.edu	37	chr9	117106081	117106081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ggacagaacatggtattcgtGgcctggggaaagaaaccaga	14	7	0	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	9	117106081	117106081	G	A	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.3664	p.H1222Y	0.999	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	204	2	0.97	161	32	16.58	-	-	-	A	117106081	G	A	117106081	3	1	745	1	0	0	0	0	1	0	0	0	463	1348	47	4	671	4	AKNA	9	117106081	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	23730283	117106081	24107350	41	65453										
CUBN	0	genome.wustl.edu	37	chr10	16878371	16878371	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cacagaactgaaatcttgaaTttccgtgaccctgaaatgaa	7	9	1	6			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	10	16878371	16878371	T	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.10043	p.N3348I	0.001	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	63	0	0	19	13	40.62	-	-	-	A	16878371	T	A	16878371	3	1	745	1	0	0	0	0	1	0	0	0	4082	1493	52	5	848	5	CUBN	10	16878371	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09		16878371	118656376	42	65454										
PLAU	0	genome.wustl.edu	37	chr10	75672712	75672712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aacctgctatgaggggaatgGtcacttttaccgaggaaagg	13	7	1	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	10	75672712	75672712	G	A	SNP	PLAU	ENST00000372764	human	ensembl	69_37n	1	known	missense	c.224	p.G75D	0.998	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861	117	0	0	97	63	39.38	-	-	-	A	75672712	G	A	75672712	3	1	745	1	0	0	0	0	1	0	0	0	12096	1261	44	4	276	4	PLAU	10	75672712	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	58794341	75672712	59862035	43	65455										
SLC16A12	0	genome.wustl.edu	37	chr10	91198597	91198597	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aaacagcaacagaggcaagtCtgtgcccattctttggtcaa	9	10	3	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	10	91198597	91198597	C	T	SNP	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	silent	c.792	p.Q264	0.001	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	156	0	0	17	16	48.48	-	-	-	T	91198597	C	T	91198597	2	4	745	1	0	0	0	0	0	0	0	1	14494	912	32	2		2	SLC16A12	10	91198597	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	15525885	91198597	44336150	44	65456										
CHORDC1	0	genome.wustl.edu	37	chr11	89938668	89938668	+	Frame_Shift_Del	DEL	C	C	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgtgtttcccttttgtacagCcctcttgggctaagaatgta							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	11	89938668	89938668	C	-	DEL	CHORDC1	ENST00000320585	human	ensembl	69_37n	-1	known	frame_shift_del	c.629	p.G210fs	1.000	pfam_CHORD	pfam_CHORD,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	CHORDC1	HGNC	ENSG00000110172	70	0	0	15	2	11.76	-	-	-	-	89938668	C	-	89938668	7	5	745	1	0	1	0	1	0	0	0	0	3394	739	26	0	385	0	CHORDC1	11	89938668	Frame_Shift_Del	DEL	C	TCGA-E2-A109-01A-11D-A10M-09		89938668	45067848	45	65457										
ANO6	0	genome.wustl.edu	37	chr12	45810499	45810499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cagttattcagtttgggttcGtcaccttatttgtggcctct	9	9	3	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	12	45810499	45810499	G	A	SNP	ANO6	ENST00000425752	human	ensembl	69_37n	1	known	missense	c.2029	p.V677I	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	490	0	0	112	58	34.12	-	-	-	A	45810499	G	A	45810499	3	1	745	1	0	0	0	0	1	0	0	0	700	1145	40	1	2115	1	ANO6	12	45810499	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09		45810499	88041396	46	65458										
OSBPL8	0	genome.wustl.edu	37	chr12	76769099	76769099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgtatccagttttttgacatGtaatattgactgttccacca	6	8	0	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	12	76769099	76769099	G	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.1781	p.T594K	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	191	0	0	30	4	11.76	-	-	-	T	76769099	G	T	76769099	3	4	745	1	0	0	0	0	1	0	0	0	11356	1377	48	4	920	4	OSBPL8	12	76769099	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	30958600	76769099	57082796	47	65459										
SDR39U1	0	genome.wustl.edu	37	chr14	24910883	24910883	+	Frame_Shift_Del	DEL	C	C	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgatttggggggcgtacctaCacctgtgactaagacccagg							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	14	24910883	24910883	C	-	DEL	SDR39U1	ENST00000399395	human	ensembl	69_37n	-1	known	frame_shift_del	c.325	p.V109fs	1.000	pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445	63	0	0	59	25	29.41	-	-	-	-	24910883	C	-	24910883	7	5	745	1	0	1	0	1	0	0	0	0	14060	478	17	0	568	0	SDR39U1	14	24910883	Frame_Shift_Del	DEL	C	TCGA-E2-A109-01A-11D-A10M-09		24910883	82438657	48	65460										
AKAP6	0	genome.wustl.edu	37	chr14	33290718	33290718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	aagttaattagtttgaatgaGgaatcaaatgaccttgatca	8	4	2	4			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	14	33290718	33290718	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	silent	c.3699	p.E1233	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	140	0	0	25	6	19.35	-	-	-	A	33290718	G	A	33290718	2	1	745	1	0	0	0	0	0	0	0	1	455	991	35	4		4	AKAP6	14	33290718	Silent	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	8379835	33290718	74058822	49	65461										
SCAPER	0	genome.wustl.edu	37	chr15	77067311	77067311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ctttctgtatgctttcatcaGgtaaaagacatacattttct	5	8	4	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	15	77067311	77067311	G	C	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.920	p.P307R	0.040	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	250	0	0	75	41	35.04	-	-	-	C	77067311	G	C	77067311	3	2	745	1	0	0	0	0	1	0	0	0	13965	1000	35	4	3378	4	SCAPER	15	77067311	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09		77067311	25464081	50	65462										
NOMO2	0	genome.wustl.edu	37	chr16	18542797	18542797	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgatatcttacccaaacaagAgactttcccagaaactgatg	6	10	1	4			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	16	18542797	18542797	A	C	SNP	NOMO2	ENST00000381474	human	ensembl	69_37n	-1	known	missense	c.1528	p.S510A	1.000	NULL	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	1048	0	0	605	221	26.72	-	-	-	C	18542797	A	C	18542797	3	2	745	1	0	0	0	0	1	0	0	0	10604	304	11	5	2359	5	NOMO2	16	18542797	Missense_Mutation	SNP	A	TCGA-E2-A109-01A-11D-A10M-09		18542797	71811956	51	65463										
SIAH1	0	genome.wustl.edu	37	chr16	48396255	48396255	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	caagtcattgttggatgcagTtgtgccagtcagggcaggca	14	8	2	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	16	48396255	48396255	T	C	SNP	SIAH1	ENST00000356721	human	ensembl	69_37n	-1	known	missense	c.178	p.T60A	1.000	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH1	HGNC	ENSG00000196470	193	1	0.51	143	38	20.99	-	-	-	C	48396255	T	C	48396255	3	2	745	1	0	0	0	0	1	0	0	0	14388	1725	60	5	767	5	SIAH1	16	48396255	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09	29853458	48396255	41958498	52	65464										
ADCY7	0	genome.wustl.edu	37	chr16	50334759	50334759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acgacgtgtccctggccaacCggatggaggcagccggagta	15	12	0	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	16	50334759	50334759	C	T	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.1210	p.R404W	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	279	1	0.36	304	100	24.75	-	-	-	T	50334759	C	T	50334759	3	4	745	1	0	0	0	0	1	0	0	0	299	643	23	1	1240	1	ADCY7	16	50334759	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	1938504	50334759	40019994	53	65465										
ZNF778	0	genome.wustl.edu	37	chr16	89294298	89294298	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	accggggagaagccctatgaAtgtaaggactgtgggaaagc	15	7	0	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	16	89294298	89294298	A	G	SNP	ZNF778	ENST00000433976	human	ensembl	69_37n	1	known	silent	c.1518	p.E506	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100	139	0	0	85	72	45.57	-	-	-	G	89294298	A	G	89294298	2	3	745	1	0	0	0	0	0	0	0	1	18244	98	4	5		5	ZNF778	16	89294298	Silent	SNP	A	TCGA-E2-A109-01A-11D-A10M-09	38959539	89294298	1060455	54	65466										
ZNF276	0	genome.wustl.edu	37	chr16	89804566	89804566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gacacagacccaggacaaggCcctgcccctggaggcggaac	13	15	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	16	89804566	89804566	C	T	SNP	ZNF276	ENST00000443381	human	ensembl	69_37n	1	known	missense	c.1757	p.A586V	0.959	NULL	pfam_Znf_AD,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF276	HGNC	ENSG00000158805	48	0	0	30	12	28.57	-	-	-	T	89804566	C	T	89804566	3	4	745	1	0	0	0	0	1	0	0	0	17907	739	26	4	1799	4	ZNF276	16	89804566	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	510268	89804566	550187	55	65467										
WSB1	0	genome.wustl.edu	37	chr17	25637136	25637136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ttgctggaggagcaaatgacCggtgggtacgatctgtatct	14	7	2	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	17	25637136	25637136	C	G	SNP	WSB1	ENST00000262394	human	ensembl	69_37n	1	known	missense	c.934	p.R312G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,prints_G-protein_beta_WD-40_rep,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WSB1	HGNC	ENSG00000109046	374	0	0	336	69	17.04	-	-	-	G	25637136	C	G	25637136	3	3	745	1	0	0	0	0	1	0	0	0	17501	643	23	3	960	3	WSB1	17	25637136	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09		25637136	55558074	56	65468										
LAMA1	0	genome.wustl.edu	37	chr18	7033069	7033069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gtcgatggcattagagctggCtatgtccagagagacggact	14	8	0	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	18	7033069	7033069	C	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.2077	p.A693S	0.996	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	174	0	0	102	47	31.54	-	-	-	A	7033069	C	A	7033069	3	1	745	1	0	0	0	0	1	0	0	0	8659	797	28	4	7346	4	LAMA1	18	7033069	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09		7033069	71044179	57	65469										
MAPRE2	0	genome.wustl.edu	37	chr18	32720267	32720267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ccctgcccacaggagggccaCacagaagagccggaagcaga	13	14	0	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	18	32720267	32720267	C	A	SNP	MAPRE2	ENST00000300249	human	ensembl	69_37n	1	known	missense	c.918	p.H306Q	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE2	HGNC	ENSG00000166974	111	0	0	37	9	19.57	-	-	-	A	32720267	C	A	32720267	3	1	745	1	0	0	0	0	1	0	0	0	9366	477	17	4	1038	4	MAPRE2	18	32720267	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	25687198	32720267	45356981	58	65470										
OR7A17	0	genome.wustl.edu	37	chr19	14992035	14992035	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgagattgtggccaggatgaTgagcagattcccgagcacag	14	8	0	4			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	19	14992035	14992035	T	C	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	missense	c.133	p.I45V	0.848	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	99	0	0	30	5	14.29	-	-	-	C	14992035	T	C	14992035	3	2	745	1	0	0	0	0	1	0	0	0	11288	1464	51	5	798	5	OR7A17	19	14992035	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09		14992035	44136948	59	65471										
TTYH1	0	genome.wustl.edu	37	chr19	54930398	54930398	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gcttctgctgctgccggcccCccgagccccccgggtccaag	12	20	1	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	19	54930398	54930398	C	A	SNP	TTYH1	ENST00000376531	human	ensembl	69_37n	1	known	missense	c.223	p.P75T	0.776	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614	52	0	0	30	16	34.78	-	-	-	A	54930398	C	A	54930398	3	1	745	1	0	0	0	0	1	0	0	0	16836	623	22	4	229	4	TTYH1	19	54930398	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	39938363	54930398	4198585	60	65472										
NLRP7	0	genome.wustl.edu	37	chr19	55451245	55451245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acccttacgtagatcggctgCtgcgccaggagctggaggtc	14	12	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	19	55451245	55451245	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	silent	c.1026	p.Q342	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	117	0	0	80	31	27.43	-	-	-	T	55451245	C	T	55451245	2	4	745	1	0	0	0	0	0	0	0	1	10554	796	28	4		4	NLRP7	19	55451245	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	520847	55451245	3677738	61	65473										
CHD6	0	genome.wustl.edu	37	chr20	40127957	40127957	+	Frame_Shift_Del	DEL	A	A	-													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cctggacagtcttagatgccAggatcttctcaatgatgttt							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	20	40127957	40127957	A	-	DEL	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	frame_shift_del	c.893	p.L298fs	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	103	0	0	18	2	10	-	-	-	-	40127957	A	-	40127957	7	5	745	1	0	1	0	1	0	0	0	0	3358	188	7	0	7382	0	CHD6	20	40127957	Frame_Shift_Del	DEL	A	TCGA-E2-A109-01A-11D-A10M-09		40127957	22897563	62	65474										
CHKB	0	genome.wustl.edu	37	chr22	51018482	51018482	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gagtataatcataaacccacTcacaaaaatggttcccaatg	5	10	2	0			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	22	51018482	51018482	T	G	SNP	CHKB	ENST00000406938	human	ensembl	69_37n	-1	known	missense	c.848	p.E283A	1.000	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288	96	0	0	79	12	13.19	-	-	-	G	51018482	T	G	51018482	3	3	745	1	0	0	0	0	1	0	0	0	3377	1551	54	5	355	5	CHKB	22	51018482	Missense_Mutation	SNP	T	TCGA-E2-A109-01A-11D-A10M-09		51018482	286084	63	65475										
OFD1	0	genome.wustl.edu	37	chrX	13764997	13764997	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ttccagaatgattttgaaaaAgcttgtcaagcaaaatctga	7	6	2	4			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	13764997	13764997	A	T	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	1	known	missense	c.753	p.K251N	0.001	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	27	0	0	6	5	45.45	-	-	-	T	13764997	A	T	13764997	3	4	745	1	0	0	0	0	1	0	0	0	10911	69	3	5	783	5	OFD1	23	13764997	Missense_Mutation	SNP	A	TCGA-E2-A109-01A-11D-A10M-09		13764997	141505563	64	65476										
MAGEB1	0	genome.wustl.edu	37	chrX	30269554	30269554	+	Missense_Mutation	SNP	C	C	A													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gagagatgaggaagagagagCccaagtccgatccagtgtta							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	30269554	30269554	C	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.944	p.A315D	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	105	0	0	51	40	43.96	-	-	-	A	30269554	C	A	30269554	3	1	745	1	0	0	0	0	1	0	0	0	9243	739	26	4	946	4	MAGEB1	23	30269554	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	16504557	30269554	125001006	65	65477	478	2								
MAGEB1	0	genome.wustl.edu	37	chrX	30269555	30269555	+	Silent	SNP	C	C	A													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	agagatgaggaagagagagcCcaagtccgatccagtgttag							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	30269555	30269555	C	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	silent	c.945	p.A315	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	100	0	0	51	40	43.96	-	-	-	A	30269555	C	A	30269555	2	1	745	1	0	0	0	0	0	0	0	1	9243	610	22	4		4	MAGEB1	23	30269555	Silent	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	1	30269555	125001005	66	65478	478	2								
DMD	0	genome.wustl.edu	37	chrX	32305754	32305754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gcgttgcactttgcaatgctGctgtcttcttgctatgaata	9	9	2	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	32305754	32305754	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.6182	p.A2061E	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	205	0	0	44	7	13.73	-	-	-	T	32305754	G	T	32305754	3	4	745	1	0	0	0	0	1	0	0	0	4616	1319	46	4	5171	4	DMD	23	32305754	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	2036199	32305754	122964806	67	65479										
RPGR	0	genome.wustl.edu	37	chrX	38145246	38145247	+	Frame_Shift_Ins	INS	-	-	C													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	cttcttcctctccctctcctINStcttcctccccttcttcttc							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	38145246	38145247	-	C	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3006_3005	p.G1003fs	0.930:0.939	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	115	0	0	47	22	31.88	-	-	-	C	38145247	-	C	38145246	7	5	745	1	0	1	1	0	0	0	0	0	13634	1606	56	0	1015	0	RPGR	23	38145246	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	5839492	38145246	117125314	68	65480										
MED14	0	genome.wustl.edu	37	chrX	40573796	40573796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gcaaagaacttaccctaatgCaggttggcagccgtgggtaa	12	9	0	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	40573796	40573796	C	T	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.515	p.C172Y	1.000	pfam_Mediator_Med14	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	128	0	0	57	24	29.63	-	-	-	T	40573796	C	T	40573796	3	4	745	1	0	0	0	0	1	0	0	0	9503	710	25	4	3961	4	MED14	23	40573796	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	2428550	40573796	114696764	69	65481										
KIAA2022	0	genome.wustl.edu	37	chrX	73961157	73961157	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tctggtaatttgaggggaaaGactaggggtgtccggtgggg	19	4	1	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	73961157	73961157	G	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3235	p.L1079I	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	80	0	0	16	8	33.33	-	-	-	T	73961157	G	T	73961157	3	4	745	1	0	0	0	0	1	0	0	0	8321	942	33	2	1323	2	KIAA2022	23	73961157	Missense_Mutation	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	33387361	73961157	81309403	70	65482										
RAB9B	0	genome.wustl.edu	37	chrX	103080361	103080361	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	ttgttacccagaactacaaaGgggaaatgctcagggtcctt	10	9	1	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	103080361	103080361	G	T	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	silent	c.354	p.P118	0.998	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	125	0	0	40	30	42.86	-	-	-	T	103080361	G	T	103080361	2	4	745	1	0	0	0	0	0	0	0	1	13042	987	35	4		4	RAB9B	23	103080361	Silent	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	29119204	103080361	52190199	71	65483										
CXorf57	0	genome.wustl.edu	37	chrX	105868340	105868340	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	acctttttggaagttgctgaCagttcaggcacagtgtcagt	11	8	2	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	105868340	105868340	C	G	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.807	p.D269E	0.594	superfamily_NA-bd_OB-fold-like	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	318	0	0	49	38	43.68	-	-	-	G	105868340	C	G	105868340	3	3	745	1	0	0	0	0	1	0	0	0	4144	477	17	4	817	4	CXorf57	23	105868340	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	2787979	105868340	49402220	72	65484										
COL4A6	0	genome.wustl.edu	37	chrX	107418928	107418928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gtccagatggtcccatttttCcagttgatcctggaattcct	8	11	0	2			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	107418928	107418928	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.2789	p.G930V	0.959	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	185	0	0	68	44	39.29	-	-	-	A	107418928	C	A	107418928	3	1	745	1	0	0	0	0	1	0	0	0	3725	855	30	2	2354	2	COL4A6	23	107418928	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	1550588	107418928	47851632	73	65485										
KIAA1210	0	genome.wustl.edu	37	chrX	118239020	118239020	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	attcttaggtgactcatcatCgagagagatttctaccaagt	8	8	4	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	118239020	118239020	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1003	p.D335Y	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	137	0	0	37	7	15.91	-	-	-	A	118239020	C	A	118239020	3	1	745	1	0	0	0	0	1	0	0	0	8266	884	31	3	4158	3	KIAA1210	23	118239020	Missense_Mutation	SNP	C	TCGA-E2-A109-01A-11D-A10M-09	10820092	118239020	37031540	74	65486										
THOC2	0	genome.wustl.edu	37	chrX	122755400	122755401	+	Frame_Shift_Ins	INS	-	-	GG													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tttctctttttctttctcttINStccctttttctttgtcattt							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	122755400	122755401	-	GG	INS	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3824_3823	p.K1275fs	1.000:1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	46	0	0	11	2	15.38	-	-	-	GG	122755401	-	GG	122755400	7	5	745	1	0	1	1	0	0	0	0	0	15960	1841	64	0	989	0	THOC2	23	122755400	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	4516380	122755400	32515160	75	65487			2	107		2	2	19	N	-	4.477116e-05
THOC2	0	genome.wustl.edu	37	chrX	122755418	122755419	+	Frame_Shift_Ins	INS	-	-	C													0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tttccctttttctttgtcatINStttctttaacagctttgttg							TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	122755418	122755419	-	C	INS	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3806_3805	p.N1269fs	1.000:1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	31	0	0	4	2	33.33	-	-	-	C	122755419	-	C	122755418	7	5	745	1	0	1	1	0	0	0	0	0	15960	1493	52	0	1007	0	THOC2	23	122755418	Frame_Shift_Ins	INS	-	TCGA-E2-A109-01A-11D-A10M-09	18	122755418	32515142	76	65488			2	107		2	2	19	N	-	4.477116e-05
OCRL	0	genome.wustl.edu	37	chrX	128709149	128709149	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	gatgaacgaaggtaccggaaAgtctttgaagatagtgtacg	13	5	1	3			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	128709149	128709149	A	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.1635	p.K545N	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	481	0	0	201	130	39.27	-	-	-	T	128709149	A	T	128709149	3	4	745	1	0	0	0	0	1	0	0	0	10896	69	3	5	1697	5	OCRL	23	128709149	Missense_Mutation	SNP	A	TCGA-E2-A109-01A-11D-A10M-09	5953731	128709149	26561411	77	65489										
BCORL1	0	genome.wustl.edu	37	chrX	129171506	129171506	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.051948051948052	4	0.830052656288885	1.12592592592593	1.26666666666667	1.08571428571429	0.523809523809524	1	0	tgcagtgcgcaggacggcacGaggcaagagggctgcatctc	16	11	1	1			TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3585e133-b3c1-4d90-b5f2-2b867e0ae0ec	7826a2e6-30ae-460b-ab97-2986f1d76d4b	X	129171506	129171506	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	silent	c.4692	p.T1564	0.014	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	75	0	0	108	60	35.71	-	-	-	A	129171506	G	A	129171506	2	1	745	1	0	0	0	0	0	0	0	1	1391	1045	37	1		1	BCORL1	23	129171506	Silent	SNP	G	TCGA-E2-A109-01A-11D-A10M-09	462357	129171506	26099054	78	65490										
OR10Z1	0	genome.wustl.edu	37	chr1	158577134	158577134	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	gctatacagacagctctgagGaatgctttcagagggagatt	12	7	2	4			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	1	158577134	158577134	G	C	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	1	known	missense	c.906	p.R302S	0.032	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	182	0	0	139	52	27.23	-	-	-	C	158577134	G	C	158577134	3	2	746	1	0	0	0	0	1	0	0	0	10996	1165	41	2	908	2	OR10Z1	1	158577134	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09		158577134	90673487	1	65491										
MAP3K1	0	genome.wustl.edu	37	chr5	56152454	56152455	+	Frame_Shift_Ins	INS	-	-	A													0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	tggagaataaagaaactctcINSaaagggttgcacaagatgga							TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	5	56152454	56152455	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.510_511	p.G171fs	0.997:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	264	0	0	92	54	36.99	-	-	-	A	56152455	-	A	56152454	7	5	746	1	0	1	1	0	0	0	0	0	9314	813	29	0	516	0	MAP3K1	5	56152454	Frame_Shift_Ins	INS	-	TCGA-E2-A10A-01A-21D-A10Y-09		56152454	124762806	2	65492										
WRNIP1	0	genome.wustl.edu	37	chr6	2785389	2785389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	cctgaggaacgcgcccactaGgctgatgaaggatttgggct	14	10	0	3			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	2785389	2785389	G	A	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	1	known	missense	c.1871	p.R624K	1.000	pfam_MgsA_C	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	44	0	0	36	15	29.41	-	-	-	A	2785389	G	A	2785389	3	1	746	1	0	0	0	0	1	0	0	0	17500	1000	35	4	1897	4	WRNIP1	6	2785389	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09		2785389	168329678	3	65493										
HLA-A	0	genome.wustl.edu	37	chr6	29911272	29911272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	tggatggcacgtgcgtggagTggctccgcagatacctggag	17	9	0	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	29911272	29911272	T	G	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	1	known	missense	c.571	p.W191G	0.126	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	9	0	0	13	4	23.53	-	-	-	G	29911272	T	G	29911272	3	3	746	1	0	0	0	0	1	0	0	0	7246	1696	59	5	581	5	HLA-A	6	29911272	Missense_Mutation	SNP	T	TCGA-E2-A10A-01A-21D-A10Y-09	27125883	29911272	141203795	4	65494										
ESR1	0	genome.wustl.edu	37	chr6	152129128	152129131	+	Frame_Shift_Del	DEL	CCGT	CCGT	-													0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	aacgagctggagcccctgaaCcgtccgcagctcaagatccc							TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	CCGT	CCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	152129128	152129131	CCGT	-	DEL	ESR1	ENST00000206249	human	ensembl	69_37n	1	known	frame_shift_del	c.81_84	p.P29fs	0.656:0.976:0.987:0.995	prints_Oestr_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	25	0	0	16	7	29.17	-	-	-	-	152129131	CCGT	-	152129128	7	5	746	1	0	1	0	1	0	0	0	0	5293	506	18	0	83	0	ESR1	6	152129128	Frame_Shift_Del	DEL	CCGT	TCGA-E2-A10A-01A-21D-A10Y-09	122217856	152129128	18985939	5	65495										
MGAM	0	genome.wustl.edu	37	chr7	141752647	141752647	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	acctatactctgtcagtgatGttcagtataattcccatggg	8	9	3	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	7	141752647	141752647	G	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.3022	p.V1008F	0.014	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	307	1	0.32	155	98	38.74	-	-	-	T	141752647	G	T	141752647	3	4	746	1	0	0	0	0	1	0	0	0	9612	1377	48	4	3120	4	MGAM	7	141752647	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09		141752647	17386016	6	65496										
GATA3	0	genome.wustl.edu	37	chr10	8115922	8115923	+	Frame_Shift_Ins	INS	-	-	C													0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	accacgcccacgccgatgcaINScccgccatccagcctgtcct							TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	8115922	8115923	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1271_1272	p.P426fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	111	0	0	87	38	30.4	-	-	-	C	8115923	-	C	8115922	7	5	746	1	0	1	1	0	0	0	0	0	6305	159	6	0	1289	0	GATA3	10	8115922	Frame_Shift_Ins	INS	-	TCGA-E2-A10A-01A-21D-A10Y-09		8115922	127418825	7	65497										
FAM22D	0	genome.wustl.edu	37	chr10	89124862	89124862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	agaaacaacgggaagagggcGaagtgaagcagccacaggaa	15	7	0	3			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	89124862	89124862	G	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1420	p.E474K	0.000	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	17	0	0	9	6	40	-	-	-	A	89124862	G	A	89124862	3	1	746	1	0	0	0	0	1	0	0	0	5586	1059	37	1	1438	1	FAM22D	10	89124862	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09	81008940	89124862	46409885	8	65498										
MYO7A	0	genome.wustl.edu	37	chr11	76872024	76872024	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	atcactgcctttcaggggatCtacgggcggctgttcgtgtg	14	10	3	0			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	11	76872024	76872024	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	silent	c.1206	p.I402	0.996	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	143	0	0	174	77	30.68	-	-	-	T	76872024	C	T	76872024	2	4	746	1	0	0	0	0	0	0	0	1	10154	903	32	2		2	MYO7A	11	76872024	Silent	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09		76872024	58134492	9	65499										
DIP2B	0	genome.wustl.edu	37	chr12	51128870	51128870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ctgcagggttcgtctcgtggAacgtggcgcccctcagagtt	14	12	2	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	12	51128870	51128870	A	G	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.4058	p.E1353G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	372	0	0	183	96	34.41	-	-	-	G	51128870	A	G	51128870	3	3	746	1	0	0	0	0	1	0	0	0	4564	246	9	5	4192	5	DIP2B	12	51128870	Missense_Mutation	SNP	A	TCGA-E2-A10A-01A-21D-A10Y-09		51128870	82723025	10	65500										
DIS3	0	genome.wustl.edu	37	chr13	73349502	73349502	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ctgtttaaatgtttaagtccCtgtaagattatctgtttaaa	6	5	1	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	13	73349502	73349502	C	T	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	silent	c.834	p.Q278	1.000	NULL	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	251	0	0	105	85	44.74	-	-	-	T	73349502	C	T	73349502	2	4	746	1	0	0	0	0	0	0	0	1	4571	680	24	4		4	DIS3	13	73349502	Silent	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09		73349502	41820376	11	65501										
SLC24A5	0	genome.wustl.edu	37	chr15	48431272	48431272	+	Frame_Shift_Del	DEL	A	A	-													0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ctaaccacaccagattgtagAaaaaagttttggaaaaacta							TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	15	48431272	48431272	A	-	DEL	SLC24A5	ENST00000341459	human	ensembl	69_37n	1	known	frame_shift_del	c.978	p.K328fs	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A5	HGNC	ENSG00000188467	153	0	0	98	36	26.47	-	-	-	-	48431272	A	-	48431272	7	5	746	1	0	1	0	1	0	0	0	0	14558	243	9	0	1004	0	SLC24A5	15	48431272	Frame_Shift_Del	DEL	A	TCGA-E2-A10A-01A-21D-A10Y-09		48431272	54100120	12	65502										
SNX20	0	genome.wustl.edu	37	chr16	50709816	50709816	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	gtcatgctggagttggagctCaggccactgtgtgtgtctgg	16	8	3	0			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	50709816	50709816	C	T	SNP	SNX20	ENST00000330943	human	ensembl	69_37n	-1	known	silent	c.147	p.L49	0.046	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208	90	0	0	51	53	50.96	-	-	-	T	50709816	C	T	50709816	2	4	746	1	0	0	0	0	0	0	0	1	14981	813	29	2		2	SNX20	16	50709816	Silent	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09		50709816	39644937	13	65503										
MMP15	0	genome.wustl.edu	37	chr16	58075625	58075625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	cccggcctccccagccaccaCccccaggtgggaagccagag	11	20	0	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	58075625	58075625	C	A	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	1	known	missense	c.1015	p.P339T	1.000	pirsf_Pept_M10A_matrix_strom	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	11	0	0	12	7	36.84	-	-	-	A	58075625	C	A	58075625	3	1	746	1	0	0	0	0	1	0	0	0	9725	507	18	4	1037	4	MMP15	16	58075625	Missense_Mutation	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09	7365809	58075625	32279128	14	65504										
SLC38A8	0	genome.wustl.edu	37	chr16	84050323	84050323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ctcctcctccagaagtcctgCatcactgacctggaggccac	8	17	1	2			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	84050323	84050323	C	T	SNP	SLC38A8	ENST00000299709	human	ensembl	69_37n	-1	known	missense	c.963	p.M321I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558	51	0	0	15	21	58.33	-	-	-	T	84050323	C	T	84050323	3	4	746	1	0	0	0	0	1	0	0	0	14699	710	25	4	356	4	SLC38A8	16	84050323	Missense_Mutation	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09	25974698	84050323	6304430	15	65505										
GDPD1	0	genome.wustl.edu	37	chr17	57326133	57326133	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	taccttggcaaactggatgtCtcatttcaaagaggtaatat	8	7	2	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	17	57326133	57326133	C	T	SNP	GDPD1	ENST00000284116	human	ensembl	69_37n	1	known	silent	c.354	p.V118	0.997	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	685	2	0.29	423	69	14.02	-	-	-	T	57326133	C	T	57326133	2	4	746	1	0	0	0	0	0	0	0	1	6375	900	32	2		2	GDPD1	17	57326133	Silent	SNP	C	TCGA-E2-A10A-01A-21D-A10Y-09		57326133	23869077	16	65506										
ACTN4	0	genome.wustl.edu	37	chr19	39216514	39216514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	tccaggaggccctcatcttcGacaacaagcacaccaactat	6	15	2	0			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	39216514	39216514	G	T	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	1	known	missense	c.2161	p.D721Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	93	0	0	102	24	19.05	-	-	-	T	39216514	G	T	39216514	3	4	746	1	0	0	0	0	1	0	0	0	207	1058	37	3	2227	3	ACTN4	19	39216514	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09		39216514	19912469	17	65507										
LTBP4	0	genome.wustl.edu	37	chr19	41125311	41125311	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ctgccctgtgtgaaaatgtcGaaggctccttcctctgtgtc	10	12	1	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	41125311	41125311	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	nonsense	c.3328	p.E1110*	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	187	0	0	130	70	35	-	-	-	T	41125311	G	T	41125311	4	4	746	1	0	0	0	0	0	1	0	0	9142	1059	37	3	3721	3	LTBP4	19	41125311	Nonsense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09	1908797	41125311	18003672	18	65508										
SLC12A5	0	genome.wustl.edu	37	chr20	44665941	44665941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	ggtctctgggcccagagtttGggggtgccgtgggcctctgc	18	11	2	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	20	44665941	44665941	G	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.598	p.G200W	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	191	0	0	121	82	40.39	-	-	-	T	44665941	G	T	44665941	3	4	746	1	0	0	0	0	1	0	0	0	14475	1348	47	4	676	4	SLC12A5	20	44665941	Missense_Mutation	SNP	G	TCGA-E2-A10A-01A-21D-A10Y-09		44665941	18359579	19	65509										
USP11	0	genome.wustl.edu	37	chrX	47101513	47101513	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.226490598570765	3.04261363636364	0	3.47727272727273	0.1	0.5224358974359	0	gaggcatggcaaaaccacaaAcggcggaacgattctgtgat	12	9	1	1			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	X	47101513	47101513	A	G	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	silent	c.1341	p.K447	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	154	0	0	91	67	42.41	-	-	-	G	47101513	A	G	47101513	2	3	746	1	0	0	0	0	0	0	0	1	17139	40	2	5		5	USP11	23	47101513	Silent	SNP	A	TCGA-E2-A10A-01A-21D-A10Y-09		47101513	108169047	20	65510										
AKR7L	0	genome.wustl.edu	37	chr1	19595111	19595111	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	caccggagggcggccgaggtCatgctgggagcgctggcgcc	19	13	1	0			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	1	19595111	19595111	C	T	SNP	AKR7L	ENST00000420396	human	ensembl	69_37n	-1	known	missense	c.255	p.M85I	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7L	HGNC	ENSG00000211454	49	0	0	33	41	55.41	-	-	-	T	19595111	C	T	19595111	3	4	747	1	0	0	0	0	1	0	0	0	477	826	29	2	214	2	AKR7L	1	19595111	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		19595111	229655510	1	65511										
AADAC	0	genome.wustl.edu	37	chr3	151535239	151535239	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgatgaagtcccaccaacctCagatgaaaatgtcactgtga	8	10	2	5			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	3	151535239	151535239	C	A	SNP	AADAC	ENST00000232892	human	ensembl	69_37n	1	known	nonsense	c.224	p.S75*	0.994	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771	162	0	0	143	68	32.23	-	-	-	A	151535239	C	A	151535239	4	1	747	1	0	0	0	0	0	1	0	0	10	838	29	2	230	2	AADAC	3	151535239	Nonsense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		151535239	46487191	2	65512										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	94	0	0	97	50	34.01	-	-	-	G	178952085	A	G	178952085	3	3	747	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A10B-01A-11D-A10M-09	27416846	178952085	19070345	3	65513										
PCDH7	0	genome.wustl.edu	37	chr4	30921826	30921826	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gtcagcctcaggacccacatCaggggtcactgcagagttgc	12	13	4	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	4	30921826	30921826	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	69_37n	1	known	nonsense	c.3226	p.Q1076*	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	93	0	0	110	20	15.38	-	-	-	T	30921826	C	T	30921826	4	4	747	1	0	0	0	0	0	1	0	0	11589	827	29	2	3317	2	PCDH7	4	30921826	Nonsense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		30921826	160232450	4	65514										
WDFY3	0	genome.wustl.edu	37	chr4	85657344	85657347	+	Frame_Shift_Del	DEL	ATTA	ATTA	-													0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgggtggaaagactgtgtttAttaagaccactttcttttcg							TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	ATTA	ATTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	4	85657344	85657347	ATTA	-	DEL	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	frame_shift_del	c.6894_6891	p.K2299fs	0.710:0.668:0.549:0.236	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	471	0	0	343	158	31.04	-	-	-	-	85657347	ATTA	-	85657344	7	5	747	1	0	1	0	1	0	0	0	0	17367	446	16	0	3794	0	WDFY3	4	85657344	Frame_Shift_Del	DEL	ATTA	TCGA-E2-A10B-01A-11D-A10M-09	54735518	85657344	105496932	5	65515										
TET2	0	genome.wustl.edu	37	chr4	106190828	106190828	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gaaggaaggccgtccattctCaggggtcactgcatgtttgg	14	9	2	0			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	4	106190828	106190828	C	T	SNP	TET2	ENST00000380013	human	ensembl	69_37n	1	known	missense	c.4106	p.S1369L	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	116	0	0	51	61	54.46	-	-	-	T	106190828	C	T	106190828	3	4	747	1	0	0	0	0	1	0	0	0	15865	838	29	2	4221	2	TET2	4	106190828	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	20533484	106190828	84963448	6	65516										
RAPGEF6	0	genome.wustl.edu	37	chr5	130834231	130834231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	cctgtaagttaatagaaaatCttctatataagttggatcca	6	6	2	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	5	130834231	130834231	C	G	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.1324	p.D442H	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	159	0	0	77	184	70.5	-	-	-	G	130834231	C	G	130834231	3	3	747	1	0	0	0	0	1	0	0	0	13131	913	32	2	4035	2	RAPGEF6	5	130834231	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		130834231	50081029	7	65517										
FAT2	0	genome.wustl.edu	37	chr5	150946518	150946518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ttcaaaatgagggtccttcaCcacagtaatattcaaagttg	7	8	3	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	5	150946518	150946518	C	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.1975	p.V659L	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	167	0	0	208	89	29.77	-	-	-	A	150946518	C	A	150946518	3	1	747	1	0	0	0	0	1	0	0	0	5736	507	18	4	11166	4	FAT2	5	150946518	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	20112287	150946518	29968742	8	65518										
HIST1H2AE	0	genome.wustl.edu	37	chr6	26217379	26217379	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gcagcggtgctggaatatctGacggccgagatcttagagct	14	9	2	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	6	26217379	26217379	G	T	SNP	HIST1H2AE	ENST00000303910	human	ensembl	69_37n	1	known	silent	c.177	p.L59	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274	61	0	0	88	15	14.56	-	-	-	T	26217379	G	T	26217379	2	4	747	1	0	0	0	0	0	0	0	1	7183	1277	45	2		2	HIST1H2AE	6	26217379	Silent	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		26217379	144897688	9	65519										
LAMA2	0	genome.wustl.edu	37	chr6	129609065	129609065	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	catgccaatgcaatgacaacCttgacttctccatccctggc	6	15	1	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	6	129609065	129609065	C	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.2611	p.L871I	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	191	0	0	241	29	10.74	-	-	-	A	129609065	C	A	129609065	3	1	747	1	0	0	0	0	1	0	0	0	8660	681	24	4	2685	4	LAMA2	6	129609065	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	103391686	129609065	41506002	10	65520										
DGKB	0	genome.wustl.edu	37	chr7	14797340	14797340	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	aattcttcaagaacatccttTaatttctttgtagaatctat	3	7	4	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	7	14797340	14797340	T	C	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	silent	c.87	p.L29	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	144	0	0	99	34	25.56	-	-	-	C	14797340	T	C	14797340	2	2	747	1	0	0	0	0	0	0	0	1	4502	1751	61	5		5	DGKB	7	14797340	Silent	SNP	T	TCGA-E2-A10B-01A-11D-A10M-09		14797340	144341323	11	65521										
POU6F2	0	genome.wustl.edu	37	chr7	39500226	39500226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ccaaagcttttaaaatccggCgcctgtcccttggcctgacc	8	15	0	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	7	39500226	39500226	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	missense	c.1483	p.R495C	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	51	0	0	60	27	31.03	-	-	-	T	39500226	C	T	39500226	3	4	747	1	0	0	0	0	1	0	0	0	12358	768	27	1	1517	1	POU6F2	7	39500226	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	24702886	39500226	119638437	12	65522										
LAMB4	0	genome.wustl.edu	37	chr7	107710329	107710329	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgatttggggaataaggccaAgcttttgaaagaatgcaaaa	11	4	0	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	7	107710329	107710329	A	C	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.2126	p.L709R	1.000	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	67	0	0	68	31	31	-	-	-	C	107710329	A	C	107710329	3	2	747	1	0	0	0	0	1	0	0	0	8667	86	3	5	3227	5	LAMB4	7	107710329	Missense_Mutation	SNP	A	TCGA-E2-A10B-01A-11D-A10M-09	68210103	107710329	51428334	13	65523										
ASB15	0	genome.wustl.edu	37	chr7	123269363	123269363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgaggctattgctgaataatGgctatcaagtggagatgtgc	13	5	1	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	7	123269363	123269363	G	A	SNP	ASB15	ENST00000275699	human	ensembl	69_37n	1	known	missense	c.1315	p.G439S	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809	185	0	0	216	28	11.48	-	-	-	A	123269363	G	A	123269363	3	1	747	1	0	0	0	0	1	0	0	0	1023	1348	47	4	1341	4	ASB15	7	123269363	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	15559034	123269363	35869300	14	65524										
HRSP12	0	genome.wustl.edu	37	chr8	99118536	99118536	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gcctgcagctttcagaatttCacccatgtttttaagagcct	7	11	2	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	8	99118536	99118536	C	T	SNP	HRSP12	ENST00000254878	human	ensembl	69_37n	-1	known	missense	c.190	p.E64K	1.000	pfam_YjgF/Yer057p/UK114,superfamily_Endoribo_LPSP/chorism_mut-like,tigrfam_YjgF-like	pfam_YjgF/Yer057p/UK114,superfamily_Endoribo_LPSP/chorism_mut-like,tigrfam_YjgF-like	-	no_errors	HRSP12	HGNC	ENSG00000132541	143	0	0	80	108	57.14	-	-	-	T	99118536	C	T	99118536	3	4	747	1	0	0	0	0	1	0	0	0	7411	835	29	2	239	2	HRSP12	8	99118536	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		99118536	47245486	15	65525										
AQP3	0	genome.wustl.edu	37	chr9	33443389	33443389	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgtgccagggtgtagatgggCagcttgatccagggctcacg	16	9	1	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	9	33443389	33443389	C	G	SNP	AQP3	ENST00000297991	human	ensembl	69_37n	-1	known	silent	c.303	p.L101	0.991	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_3,prints_MIP,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_3,prints_MIP,tigrfam_Aquaporin	-	no_errors	AQP3	HGNC	ENSG00000165272	105	0	0	117	47	28.66	-	-	-	G	33443389	C	G	33443389	2	3	747	1	0	0	0	0	0	0	0	1	829	697	25	4		4	AQP3	9	33443389	Silent	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		33443389	107770042	16	65526										
VPS13A	0	genome.wustl.edu	37	chr9	79931137	79931137	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	aaattaatgttattattaaaAatcctgaaattgtgtttgta	5	2	0	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	9	79931137	79931137	A	G	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	missense	c.4678	p.N1560D	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	52	0	0	79	22	21.78	-	-	-	G	79931137	A	G	79931137	3	3	747	1	0	0	0	0	1	0	0	0	17286	14	1	5	4832	5	VPS13A	9	79931137	Missense_Mutation	SNP	A	TCGA-E2-A10B-01A-11D-A10M-09	46487748	79931137	61282294	17	65527										
MUC2	0	genome.wustl.edu	37	chr11	1101591	1101591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	cctgtgcaaagagaagccctCcgtgtgcccgctgggattcg	13	13	0	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	11	1101591	1101591	C	T	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.7604	p.S2535F	0.011	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	95	0	0	66	86	56.58	-	-	-	T	1101591	C	T	1101591	3	4	747	1	0	0	0	0	1	0	0	0	10047	855	30	2	7762	2	MUC2	11	1101591	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		1101591	133904925	18	65528										
ZBTB3	0	genome.wustl.edu	37	chr11	62520584	62520584	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	actagacattggtggctcatCtggaggacggacagtaggtg	15	7	2	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	11	62520584	62520584	C	T	SNP	ZBTB3	ENST00000394807	human	ensembl	69_37n	-1	known	missense	c.703	p.D235N	0.983	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670	100	0	0	126	56	30.77	-	-	-	T	62520584	C	T	62520584	3	4	747	1	0	0	0	0	1	0	0	0	17630	913	32	2	1025	2	ZBTB3	11	62520584	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	61418993	62520584	72485932	19	65529										
UBC	0	genome.wustl.edu	37	chr12	125396964	125396964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ctgcatcccacctctaagacGgagcaccaggtgcagggtgg	13	13	1	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	12	125396964	125396964	G	A	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.1354	p.R452C	1.000	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	85	0	0	111	47	29.75	-	-	-	A	125396964	G	A	125396964	3	1	747	1	0	0	0	0	1	0	0	0	16939	1116	39	1	707	1	UBC	12	125396964	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		125396964	8454931	20	65530										
PIWIL1	0	genome.wustl.edu	37	chr12	130834441	130834441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gagtggatgatattgactggGaccagaatcccaagagcacc	12	9	0	4			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	12	130834441	130834441	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.973	p.D325N	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	80	0	0	140	55	28.21	-	-	-	A	130834441	G	A	130834441	3	1	747	1	0	0	0	0	1	0	0	0	12031	1174	41	2	1003	2	PIWIL1	12	130834441	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	5437477	130834441	3017454	21	65531										
NEK3	0	genome.wustl.edu	37	chr13	52707946	52707946	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ggggcctttcaagaacccttCtgaaccttcaggagatatta	9	10	3	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	13	52707946	52707946	C	T	SNP	NEK3	ENST00000452082	human	ensembl	69_37n	-1	known	missense	c.1327	p.E443K	0.685	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098	73	0	0	68	10	12.82	-	-	-	T	52707946	C	T	52707946	3	4	747	1	0	0	0	0	1	0	0	0	10397	922	32	2	213	2	NEK3	13	52707946	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		52707946	62461932	22	65532										
ATP11A	0	genome.wustl.edu	37	chr13	113474225	113474225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgtcgccaggttcgtgggtcGcatcaacgtttacagtgacc	12	11	1	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	13	113474225	113474225	G	A	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.686	p.R229H	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	92	0	0	56	72	56.25	-	-	-	A	113474225	G	A	113474225	3	1	747	1	0	0	0	0	1	0	0	0	1123	1087	38	1	716	1	ATP11A	13	113474225	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	60766279	113474225	1695653	23	65533										
TEP1	0	genome.wustl.edu	37	chr14	20863645	20863645	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tcagcttctccctcttgagcTgctcatacaacacaggtatc	6	14	4	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	14	20863645	20863645	T	G	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.1892	p.Q631P	0.774	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	167	0	0	126	75	37.13	-	-	-	G	20863645	T	G	20863645	3	3	747	1	0	0	0	0	1	0	0	0	15854	1580	55	5	6167	5	TEP1	14	20863645	Missense_Mutation	SNP	T	TCGA-E2-A10B-01A-11D-A10M-09		20863645	86485895	24	65534										
ADAM21	0	genome.wustl.edu	37	chr14	70924450	70924450	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	cacgttgttcatatgagggtCaagaagctcttagtttctag	10	7	4	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	14	70924450	70924450	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	silent	c.234	p.V78	0.170	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	127	1	0.78	118	21	15.11	-	-	-	T	70924450	C	T	70924450	2	4	747	1	0	0	0	0	0	0	0	1	243	813	29	2		2	ADAM21	14	70924450	Silent	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09	50060805	70924450	36425090	25	65535										
USP8	0	genome.wustl.edu	37	chr15	50782646	50782646	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tgaagcgctcctactcctccCcagatataacccaggctatt	6	15	0	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	15	50782646	50782646	C	G	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.2158	p.P720A	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	157	0	0	93	87	48.33	-	-	-	G	50782646	C	G	50782646	3	3	747	1	0	0	0	0	1	0	0	0	17186	623	22	4	2208	4	USP8	15	50782646	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		50782646	51748746	26	65536										
CRLF3	0	genome.wustl.edu	37	chr17	29123274	29123274	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gttccatgcttaaaaatgtgGtctttcactatgttaagaat	7	6	2	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	17	29123274	29123274	G	A	SNP	CRLF3	ENST00000324238	human	ensembl	69_37n	-1	known	silent	c.507	p.D169	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF3	HGNC	ENSG00000176390	167	0	0	79	105	57.07	-	-	-	A	29123274	G	A	29123274	2	1	747	1	0	0	0	0	0	0	0	1	3918	1252	44	4		4	CRLF3	17	29123274	Silent	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		29123274	52071936	27	65537										
PSMG2	0	genome.wustl.edu	37	chr18	12706699	12706699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ccacagaaggaaattcaacaGaacttagcataaatgctgaa	7	8	1	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	18	12706699	12706699	G	A	SNP	PSMG2	ENST00000317615	human	ensembl	69_37n	1	known	missense	c.208	p.E70K	1.000	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	-	no_errors	PSMG2	HGNC	ENSG00000128789	191	0	0	226	46	16.91	-	-	-	A	12706699	G	A	12706699	3	1	747	1	0	0	0	0	1	0	0	0	12792	943	33	2	214	2	PSMG2	18	12706699	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		12706699	65370549	28	65538										
KRI1	0	genome.wustl.edu	37	chr19	10670170	10670170	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tccttcctcttcaggttcttCagctgcttgagctcttcctg	7	14	5	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	19	10670170	10670170	C	T	SNP	KRI1	ENST00000312962	human	ensembl	69_37n	-1	known	silent	c.1077	p.L359	0.997	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347	110	0	0	189	27	12.5	-	-	-	T	10670170	C	T	10670170	2	4	747	1	0	0	0	0	0	0	0	1	8497	813	29	2		2	KRI1	19	10670170	Silent	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		10670170	48458813	29	65539										
ZNF563	0	genome.wustl.edu	37	chr19	12432110	12432110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	gatttctcctaggatttttgTactgatcttcagtattctgt	7	7	4	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	19	12432110	12432110	T	C	SNP	ZNF563	ENST00000293725	human	ensembl	69_37n	-1	known	missense	c.167	p.Y56C	0.371	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868	213	0	0	183	108	37.11	-	-	-	C	12432110	T	C	12432110	3	2	747	1	0	0	0	0	1	0	0	0	18090	1638	57	5	1271	5	ZNF563	19	12432110	Missense_Mutation	SNP	T	TCGA-E2-A10B-01A-11D-A10M-09	1761940	12432110	46696873	30	65540										
HOOK2	0	genome.wustl.edu	37	chr19	12876942	12876942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ctgcgtctccaacccgtggcGcgcgcggttggcatcctcca	12	17	1	0			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	19	12876942	12876942	G	A	SNP	HOOK2	ENST00000397668	human	ensembl	69_37n	-1	known	missense	c.1486	p.R496C	0.642	pfam_HOOK	pfam_HOOK,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066	13	0	0	17	5	22.73	-	-	-	A	12876942	G	A	12876942	3	1	747	1	0	0	0	0	1	0	0	0	7334	1087	38	1	709	1	HOOK2	19	12876942	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	444832	12876942	46252041	31	65541										
ZNF85	0	genome.wustl.edu	37	chr19	21131813	21131813	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	tttcaaattcaaacagacatGagataagacatactaaaaag	5	6	2	3			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	19	21131813	21131813	G	C	SNP	ZNF85	ENST00000328178	human	ensembl	69_37n	1	known	missense	c.493	p.E165Q	0.033	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750	49	0	0	49	44	47.31	-	-	-	C	21131813	G	C	21131813	3	2	747	1	0	0	0	0	1	0	0	0	18286	1291	45	2	507	2	ZNF85	19	21131813	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	8254871	21131813	37997170	32	65542										
ZNF571	0	genome.wustl.edu	37	chr19	38055672	38055672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	attcatagggtttctctccaGtatgagttctcagatgttca	8	8	4	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	19	38055672	38055672	G	T	SNP	ZNF571	ENST00000328550	human	ensembl	69_37n	-1	known	missense	c.1658	p.T553N	0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479	124	0	0	137	89	39.38	-	-	-	T	38055672	G	T	38055672	3	4	747	1	0	0	0	0	1	0	0	0	18099	1029	36	4	175	4	ZNF571	19	38055672	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	16923859	38055672	21073311	33	65543										
POTED	0	genome.wustl.edu	37	chr21	15011930	15011930	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ctaataaacaaaagcagataGaagtggctgaacagaaaatg	9	5	0	4			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	21	15011930	15011930	G	C	SNP	POTED	ENST00000299443	human	ensembl	69_37n	1	known	missense	c.1504	p.E502Q	0.018	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTED	HGNC	ENSG00000166351	212	0	0	190	125	39.68	-	-	-	C	15011930	G	C	15011930	3	2	747	1	0	0	0	0	1	0	0	0	12337	943	33	2	1542	2	POTED	21	15011930	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		15011930	33117965	34	65544										
PRR5-ARHGAP8	0	genome.wustl.edu	37	chr22	45204250	45204250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	accatcgtctatttccactaCgggctgaacagccggaacaa	8	13	1	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	22	45204250	45204250	C	T	SNP	PRR5-ARHGAP8	ENST00000515632	human	ensembl	69_37n	1	putative	missense	c.392	p.T131M	0.996	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRR5-ARHGAP8	HGNC	ENSG00000248405	88	0	0	131	15	10.27	-	-	-	T	45204250	C	T	45204250	3	4	747	1	0	0	0	0	1	0	0	0	12681	547	19	1	623	1	PRR5-ARHGAP8	22	45204250	Missense_Mutation	SNP	C	TCGA-E2-A10B-01A-11D-A10M-09		45204250	6100316	35	65545										
ERCC6L	0	genome.wustl.edu	37	chrX	71425081	71425081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	ccaactgttcaccagacaaaGgctcaggggcaccaagagag	11	12	2	2			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	X	71425081	71425081	G	T	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.3536	p.P1179H	0.007	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	228	0	0	195	93	32.29	-	-	-	T	71425081	G	T	71425081	3	4	747	1	0	0	0	0	1	0	0	0	5255	1000	35	4	220	4	ERCC6L	23	71425081	Missense_Mutation	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09		71425081	83845479	36	65546										
CXorf57	0	genome.wustl.edu	37	chrX	105905447	105905447	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.324324324324324	12	0.00394641254178311	2.703125	3.24375	2.56085526315789	0.0542378965316102	0.396486137998304	8	cagtataattctcagcctgcGaaatatgtaccaccagaagg	8	10	1	1			TCGA-E2-A10B-01A-11D-A10M-09	TCGA-E2-A10B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9d712002-74cb-459a-b350-e9a4b49aac13	814d30f1-0842-4ace-86c2-fb1c50013484	X	105905447	105905447	G	A	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	silent	c.2181	p.A727	0.707	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	128	0	0	111	53	32.32	-	-	-	A	105905447	G	A	105905447	2	1	747	1	0	0	0	0	0	0	0	1	4144	1045	37	1		1	CXorf57	23	105905447	Silent	SNP	G	TCGA-E2-A10B-01A-11D-A10M-09	34480366	105905447	49365113	37	65547										
CDK11B	0	genome.wustl.edu	37	chr1	1573894	1573894	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttttgctctgtagaccactCcataggtgccctcctcgatc	7	15	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	1573894	1573894	C	G	SNP	CDK11B	ENST00000407249	human	ensembl	69_37n	-1	known	missense	c.1319	p.G440A	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11B	HGNC	ENSG00000248333	65	0	0	82	22	21.15	-	-	-	G	1573894	C	G	1573894	3	3	748	1	0	0	0	0	1	0	0	0	3156	855	30	2	1074	2	CDK11B	1	1573894	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		1573894	247676727	1	65548										
PEX10	0	genome.wustl.edu	37	chr1	2340225	2340225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccagcacgccacggcgcagcGaggagggcacatgtatccgc	14	15	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	2340225	2340225	G	A	SNP	PEX10	ENST00000288774	human	ensembl	69_37n	-1	known	missense	c.266	p.S89L	0.000	pfam_Pex_N	pfam_Pex_N,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX10	HGNC	ENSG00000157911	11	0	0	43	17	28.33	-	-	-	A	2340225	G	A	2340225	3	1	748	1	0	0	0	0	1	0	0	0	11810	1059	37	1	790	1	PEX10	1	2340225	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	766331	2340225	246910396	2	65549										
CHD5	0	genome.wustl.edu	37	chr1	6195315	6195315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catctggctcagctccacccGgacaatgagctcggtcttgg	11	14	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	6195315	6195315	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.2845	p.R949W	0.996	pfam_SNF2_N	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	18	0	0	31	11	26.19	-	-	-	A	6195315	G	A	6195315	3	1	748	1	0	0	0	0	1	0	0	0	3357	1115	39	1	3115	1	CHD5	1	6195315	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3855090	6195315	243055306	3	65550										
EXOSC10	0	genome.wustl.edu	37	chr1	11137494	11137494	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggtccaaagagaacattctCcaatctctgcattaaaagac	6	10	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	11137494	11137494	C	G	SNP	EXOSC10	ENST00000376936	human	ensembl	69_37n	-1	known	missense	c.1807	p.E603Q	1.000	NULL	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_Helicase/RNaseD_C,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C	-	no_errors	EXOSC10	HGNC	ENSG00000171824	27	0	0	30	8	21.05	-	-	-	G	11137494	C	G	11137494	3	3	748	1	0	0	0	0	1	0	0	0	5350	864	30	2	890	2	EXOSC10	1	11137494	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4942179	11137494	238113127	4	65551										
NBPF3	0	genome.wustl.edu	37	chr1	21800026	21800026	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaccaagtcgactcaactctCattgactcatcctctcatga	5	14	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	21800026	21800026	C	T	SNP	NBPF3	ENST00000318249	human	ensembl	69_37n	1	known	silent	c.888	p.L296	0.006	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF3	HGNC	ENSG00000142794	280	0	0	185	52	21.94	-	-	-	T	21800026	C	T	21800026	2	4	748	1	0	0	0	0	0	0	0	1	10269	813	29	2		2	NBPF3	1	21800026	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10662532	21800026	227450595	5	65552										
HTR1D	0	genome.wustl.edu	37	chr1	23519996	23519996	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtgatgaggtgggccgtggtGaagcgcttcccatagagtga	17	7	0	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	23519996	23519996	G	A	SNP	HTR1D	ENST00000314113	human	ensembl	69_37n	-1	known	silent	c.717	p.F239	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1D_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	29	0	0	30	11	26.83	-	-	-	A	23519996	G	A	23519996	2	1	748	1	0	0	0	0	0	0	0	1	7492	1281	45	2		2	HTR1D	1	23519996	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1719970	23519996	225730625	6	65553										
GRHL3	0	genome.wustl.edu	37	chr1	24664133	24664133	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcctccctgcagtgactttGaatacaccctgggctccccc	7	18	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	24664133	24664133	G	C	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	1	known	missense	c.694	p.E232Q	1.000	pfam_CP2	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	36	0	0	49	21	30	-	-	-	C	24664133	G	C	24664133	3	2	748	1	0	0	0	0	1	0	0	0	6816	1291	45	2	752	2	GRHL3	1	24664133	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1144137	24664133	224586488	7	65554										
PHACTR4	0	genome.wustl.edu	37	chr1	28800206	28800206	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccacaaaaacaccaagtgatGaaagagagaagagcacgtgt	10	8	0	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	28800206	28800206	G	A	SNP	PHACTR4	ENST00000373836	human	ensembl	69_37n	1	known	missense	c.994	p.E332K	0.999	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138	125	0	0	110	40	26.49	-	-	-	A	28800206	G	A	28800206	3	1	748	1	0	0	0	0	1	0	0	0	11886	1291	45	2	1036	2	PHACTR4	1	28800206	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4136073	28800206	220450415	8	65555										
PEF1	0	genome.wustl.edu	37	chr1	32098889	32098889	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctggaaccaggagtaggcctCaggatccacattgggagggg	16	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	32098889	32098889	C	T	SNP	PEF1	ENST00000373703	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	PEF1	HGNC	ENSG00000162517	24	0	0	30	18	37.5	-	-	-	T	32098889	C	T	32098889	3	4	748	1	0	0	0	0	1	0	0	0	11791	835	29	2	514	2	PEF1	1	32098889	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3298683	32098889	217151732	9	65556										
ZCCHC11	0	genome.wustl.edu	37	chr1	52991817	52991817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cctatttggagagctgttctCaatttcttttacggatttat	7	7	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	52991817	52991817	C	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	69_37n	-1	known	missense	c.136	p.E46K	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	123	0	0	48	13	21.31	-	-	-	T	52991817	C	T	52991817	3	4	748	1	0	0	0	0	1	0	0	0	17676	835	29	2	4917	2	ZCCHC11	1	52991817	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	20892928	52991817	196258804	10	65557										
CPT2	0	genome.wustl.edu	37	chr1	53668050	53668050	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggattggaaaagaactgcatGagcagctggttgctctggac	14	7	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	53668050	53668050	G	A	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	1	known	missense	c.289	p.E97K	0.001	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	99	0	0	82	31	27.43	-	-	-	A	53668050	G	A	53668050	3	1	748	1	0	0	0	0	1	0	0	0	3864	1291	45	2	299	2	CPT2	1	53668050	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	676233	53668050	195582571	11	65558										
C1orf168	0	genome.wustl.edu	37	chr1	57189333	57189333	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagttttgcttcttggttttGaagaaatttctaggagagaa	10	3	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	57189333	57189333	G	A	SNP	C1orf168	ENST00000343433	human	ensembl	69_37n	-1	known	silent	c.1902	p.F634	0.999	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889	172	0	0	42	9	17.65	-	-	-	A	57189333	G	A	57189333	2	1	748	1	0	0	0	0	0	0	0	1	2031	1281	45	2		2	C1orf168	1	57189333	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3521283	57189333	192061288	12	65559										
LHX8	0	genome.wustl.edu	37	chr1	75622602	75622602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggtttcagaattgtagagcaCgccacaagaaacacgtcagt	10	9	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	75622602	75622602	C	T	SNP	LHX8	ENST00000294638	human	ensembl	69_37n	1	known	missense	c.835	p.R279C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX8	HGNC	ENSG00000162624	174	0	0	120	45	27.27	-	-	-	T	75622602	C	T	75622602	3	4	748	1	0	0	0	0	1	0	0	0	8831	536	19	1	865	1	LHX8	1	75622602	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	18433269	75622602	173628019	13	65560										
TAF13	0	genome.wustl.edu	37	chr1	109607256	109607256	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttgggtcctttcgaatcaaGaagacgatatcttcaacttg	8	9	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	109607256	109607256	G	A	SNP	TAF13	ENST00000338366	human	ensembl	69_37n	-1	known	silent	c.264	p.F88	1.000	pfam_TFIID-18	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	TAF13	HGNC	ENSG00000197780	280	0	0	144	65	31.1	-	-	-	A	109607256	G	A	109607256	2	1	748	1	0	0	0	0	0	0	0	1	15609	933	33	2		2	TAF13	1	109607256	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	33984654	109607256	139643365	14	65561										
DENND2D	0	genome.wustl.edu	37	chr1	111737258	111737258	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cacggcagaggcaaagatctGaagtatctgttcaaaactga	10	8	3	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	111737258	111737258	G	C	SNP	DENND2D	ENST00000357640	human	ensembl	69_37n	-1	known	missense	c.736	p.Q246E	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777	36	0	0	49	15	23.44	-	-	-	C	111737258	G	C	111737258	3	2	748	1	0	0	0	0	1	0	0	0	4467	1299	45	2	703	2	DENND2D	1	111737258	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2130002	111737258	137513363	15	65562										
HIST2H2BE	0	genome.wustl.edu	37	chr1	149858071	149858071	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttcagcaccttgtacacgtaGatggagtagctctctttgcg	10	10	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	149858071	149858071	G	C	SNP	HIST2H2BE	ENST00000369155	human	ensembl	69_37n	-1	known	missense	c.120	p.I40M	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	112	0	0	218	66	23.24	-	-	-	C	149858071	G	C	149858071	3	2	748	1	0	0	0	0	1	0	0	0	7230	932	33	2	264	2	HIST2H2BE	1	149858071	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	38120813	149858071	99392550	16	65563										
FDPS	0	genome.wustl.edu	37	chr1	155282164	155282164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tagtctccagcgggcctggaCtgtgggctggtgtgtggaac	17	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	155282164	155282164	C	A	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	missense	c.458	p.T153N	0.172	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	53	0	0	127	24	15.89	-	-	-	A	155282164	C	A	155282164	3	1	748	1	0	0	0	0	1	0	0	0	5849	565	20	4	468	4	FDPS	1	155282164	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5424093	155282164	93968457	17	65564										
SYT11	0	genome.wustl.edu	37	chr1	155838071	155838071	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagggggcctagctctggatCttgtatagaccaattaccca	10	11	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	155838071	155838071	C	G	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.350	p.S117C	0.766	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	34	0	0	54	8	12.9	-	-	-	G	155838071	C	G	155838071	3	3	748	1	0	0	0	0	1	0	0	0	15559	913	32	2	356	2	SYT11	1	155838071	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	555907	155838071	93412550	18	65565										
IFI16	0	genome.wustl.edu	37	chr1	159021644	159021644	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaatgaagtcttccgagtgaAggtttttaatattgacctaa	9	5	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	159021644	159021644	A	T	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.1841	p.K614M	1.000	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	78	0	0	55	66	54.55	-	-	-	T	159021644	A	T	159021644	3	4	748	1	0	0	0	0	1	0	0	0	7565	72	3	5	1703	5	IFI16	1	159021644	Missense_Mutation	SNP	A	TCGA-E2-A10C-01A-21D-A10M-09	3183573	159021644	90228977	19	65566										
RGS4	0	genome.wustl.edu	37	chr1	163044339	163044339	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	actgtgcttccctggtccctCagtgtgcctaattctcacct	7	15	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	163044339	163044339	C	T	SNP	RGS4	ENST00000421743	human	ensembl	69_37n	1	known	nonsense	c.898	p.Q300*	0.926	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS4	HGNC	ENSG00000117152	76	0	0	87	15	14.71	-	-	-	T	163044339	C	T	163044339	4	4	748	1	0	0	0	0	0	1	0	0	13391	827	29	2	920	2	RGS4	1	163044339	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4022695	163044339	86206282	20	65567										
SCYL3	0	genome.wustl.edu	37	chr1	169831924	169831924	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgagagcaagcaaggagtttCtccctgcgcatgatctaccc	10	12	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	169831924	169831924	C	A	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	nonsense	c.970	p.E324*	0.998	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	12	0	0	41	11	20.75	-	-	-	A	169831924	C	A	169831924	4	1	748	1	0	0	0	0	0	1	0	0	14037	922	32	2	1278	2	SCYL3	1	169831924	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	6787585	169831924	79418697	21	65568										
PRRX1	0	genome.wustl.edu	37	chr1	170695469	170695469	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caggagacgtgactgctgtgGagcagcccatcgtacctcgt	13	12	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	170695469	170695469	G	C	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.526	p.E176Q	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	40	0	0	65	17	20.73	-	-	-	C	170695469	G	C	170695469	3	2	748	1	0	0	0	0	1	0	0	0	12692	1175	41	2	536	2	PRRX1	1	170695469	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	863545	170695469	78555152	22	65569										
METTL13	0	genome.wustl.edu	37	chr1	171753159	171753159	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggtggacaggatgctggctGaggttggccgtgtcctgcag	18	8	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	171753159	171753159	G	T	SNP	METTL13	ENST00000361735	human	ensembl	69_37n	1	known	nonsense	c.433	p.E145*	1.000	pfam_Methyltransf_11	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165	30	0	0	100	29	22.31	-	-	-	T	171753159	G	T	171753159	4	4	748	1	0	0	0	0	0	1	0	0	9568	1291	45	2	439	2	METTL13	1	171753159	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1057690	171753159	77497462	23	65570										
CACNA1E	0	genome.wustl.edu	37	chr1	181727119	181727119	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcgccatcagcgccaaacctCtcacccgctacatgccgcag	7	19	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	181727119	181727119	C	G	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.4366	p.L1456V	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	42	0	0	126	29	18.71	-	-	-	G	181727119	C	G	181727119	3	3	748	1	0	0	0	0	1	0	0	0	2567	913	32	2	4488	2	CACNA1E	1	181727119	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9973960	181727119	67523502	24	65571										
RGS8	0	genome.wustl.edu	37	chr1	182616022	182616022	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcctgcaggttcttcctcgTggcttctcgggtctggaagt	12	12	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	182616022	182616022	T	A	SNP	RGS8	ENST00000258302	human	ensembl	69_37n	-1	known	missense	c.445	p.T149S	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS8	HGNC	ENSG00000135824	143	0	0	186	35	15.77	-	-	-	A	182616022	T	A	182616022	3	1	748	1	0	0	0	0	1	0	0	0	13396	1696	59	5	155	5	RGS8	1	182616022	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	888903	182616022	66634599	25	65572										
TPR	0	genome.wustl.edu	37	chr1	186283810	186283810	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acaccttgtctcaatgttgtCtgaagtcttactcgtctgaa	7	10	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	186283810	186283810	C	G	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.6987	p.Q2329H	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	209	0	0	209	44	17.39	-	-	-	G	186283810	C	G	186283810	3	3	748	1	0	0	0	0	1	0	0	0	16512	912	32	2	112	2	TPR	1	186283810	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3667788	186283810	62966811	26	65573										
TPR	0	genome.wustl.edu	37	chr1	186316447	186316447	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttttccttgttcagggattCttctaaactagtaaccattg	6	8	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	186316447	186316447	C	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.2920	p.E974K	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	373	0	0	347	71	16.95	-	-	-	T	186316447	C	T	186316447	3	4	748	1	0	0	0	0	1	0	0	0	16512	922	32	2	4291	2	TPR	1	186316447	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	32637	186316447	62934174	27	65574										
KCNT2	0	genome.wustl.edu	37	chr1	196295947	196295947	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	taatccatttccagctgtttCagctgcaactataattagtt	5	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	196295947	196295947	C	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	nonsense	c.2176	p.E726*	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	202	0	0	125	26	17.22	-	-	-	A	196295947	C	A	196295947	4	1	748	1	0	0	0	0	0	1	0	0	8146	835	29	2	1271	2	KCNT2	1	196295947	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9979500	196295947	52954674	28	65575										
LMOD1	0	genome.wustl.edu	37	chr1	201869306	201869306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtcatccttggcttccttttCatgtaagggttcattcttct	7	10	5	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	201869306	201869306	C	T	SNP	LMOD1	ENST00000367288	human	ensembl	69_37n	-1	known	missense	c.835	p.E279K	0.000	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	142	0	0	168	36	17.56	-	-	-	T	201869306	C	T	201869306	3	4	748	1	0	0	0	0	1	0	0	0	8912	835	29	2	975	2	LMOD1	1	201869306	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5573359	201869306	47381315	29	65576										
TRAF3IP3	0	genome.wustl.edu	37	chr1	209953885	209953885	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cctgagggtacagggaaggaGaaagactgggatctcagaga	16	6	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	209953885	209953885	G	A	SNP	TRAF3IP3	ENST00000367024	human	ensembl	69_37n	1	known	silent	c.1383	p.E461	0.976	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	61	0	0	76	16	17.39	-	-	-	A	209953885	G	A	209953885	2	1	748	1	0	0	0	0	0	0	0	1	16538	933	33	2		2	TRAF3IP3	1	209953885	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8084579	209953885	39296736	30	65577										
IRF6	0	genome.wustl.edu	37	chr1	209974721	209974721	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tatccacctgggccaccagcCagggctttagccggactctg	11	15	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	209974721	209974721	C	G	SNP	IRF6	ENST00000367021	human	ensembl	69_37n	-1	known	missense	c.38	p.W13S	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595	40	0	0	46	13	22.03	-	-	-	G	209974721	C	G	209974721	3	3	748	1	0	0	0	0	1	0	0	0	7888	595	21	4	1393	4	IRF6	1	209974721	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	20836	209974721	39275900	31	65578										
HHIPL2	0	genome.wustl.edu	37	chr1	222721350	222721350	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccagggggcccggcaatgcaGaccaccacacagattaggag	13	13	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	222721350	222721350	G	A	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	silent	c.37	p.L13	0.021	NULL	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	22	0	0	74	14	15.73	-	-	-	A	222721350	G	A	222721350	2	1	748	1	0	0	0	0	0	0	0	1	7145	933	33	2		2	HHIPL2	1	222721350	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	12746629	222721350	26529271	32	65579										
RYR2	0	genome.wustl.edu	37	chr1	237670043	237670043	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcatctagaaagaataagaGaaaaactggcagagaatatc	8	6	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	1	237670043	237670043	G	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2641	p.E881Q	1.000	pfam_Ryanodine_rcpt,prints_Ryan_recept	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	217	0	0	212	52	19.7	-	-	-	C	237670043	G	C	237670043	3	2	748	1	0	0	0	0	1	0	0	0	13855	943	33	2	2737	2	RYR2	1	237670043	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	14948693	237670043	11580578	33	65580										
SH3YL1	0	genome.wustl.edu	37	chr2	230038	230038	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caatggctttggaggtaattCtttagcctgggagaaacaaa	11	6	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	230038	230038	C	G	SNP	SH3YL1	ENST00000356150	human	ensembl	69_37n	-1	known	missense	c.709	p.E237Q	0.975	NULL	pfam_Ysc84_actin-binding,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3YL1	HGNC	ENSG00000035115	128	0	0	96	33	25.58	-	-	-	G	230038	C	G	230038	3	3	748	1	0	0	0	0	1	0	0	0	14352	922	32	2	331	2	SH3YL1	2	230038	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		230038	242969335	34	65581										
PXDN	0	genome.wustl.edu	37	chr2	1653128	1653128	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtgaactgctcgtcgggtgtGacggtctccgtcccgatcag	14	12	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	1653128	1653128	G	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	silent	c.2424	p.V808	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	14	0	0	50	14	21.88	-	-	-	A	1653128	G	A	1653128	2	1	748	1	0	0	0	0	0	0	0	1	12930	1277	45	2		2	PXDN	2	1653128	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1423090	1653128	241546245	35	65582										
CIB4	0	genome.wustl.edu	37	chr2	26805698	26805698	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tccagaatgccttacttcatGaaatctggagacttggccat	8	10	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	26805698	26805698	G	A	SNP	CIB4	ENST00000288861	human	ensembl	69_37n	-1	known	silent	c.522	p.F174	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CIB4	HGNC	ENSG00000157884	46	0	0	77	23	23	-	-	-	A	26805698	G	A	26805698	2	1	748	1	0	0	0	0	0	0	0	1	3452	1281	45	2		2	CIB4	2	26805698	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	25152570	26805698	216393675	36	65583										
CAD	0	genome.wustl.edu	37	chr2	27460410	27460410	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cctgctctggccctggcccaGaaggtgagccactgcactct	11	16	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	27460410	27460410	G	A	SNP	CAD	ENST00000458503	human	ensembl	69_37n	1	novel	missense	c.515	p.R172K	1.000	pfam_Amidohydro_1	pfam_Amidohydro_1,pfam_MGS-like_dom,superfamily_MGS-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CAD	HGNC	ENSG00000084774	9	0	0	40	7	14.89	-	-	-	A	27460410	G	A	27460410	3	1	748	1	0	0	0	0	1	0	0	0	2590	933	33	2	4670	2	CAD	2	27460410	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	654712	27460410	215738963	37	65584										
CAPN13	0	genome.wustl.edu	37	chr2	30974021	30974021	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catcttctgctttcaaatttGatggtgtgacagcaactgtg	9	8	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	30974021	30974021	G	C	SNP	CAPN13	ENST00000295055	human	ensembl	69_37n	-1	known	nonsense	c.1184	p.S395*	0.229	pfam_Calpain_domain_III,superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	24	0	0	44	17	27.87	-	-	-	C	30974021	G	C	30974021	4	2	748	1	0	0	0	0	0	1	0	0	2651	1294	45	2	873	2	CAPN13	2	30974021	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3513611	30974021	212225352	38	65585										
DHX57	0	genome.wustl.edu	37	chr2	39050344	39050344	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acgaagagaatcggtgtgtgGaggttcaatgagccgagaga	16	5	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	39050344	39050344	G	C	SNP	DHX57	ENST00000295373	human	ensembl	69_37n	-1	known	missense	c.3082	p.P1028A	1.000	NULL	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214	60	0	0	31	5	13.89	-	-	-	C	39050344	G	C	39050344	3	2	748	1	0	0	0	0	1	0	0	0	4549	1174	41	2	1110	2	DHX57	2	39050344	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8076323	39050344	204149029	39	65586										
ZFP36L2	0	genome.wustl.edu	37	chr2	43453450	43453450	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggcggacagaagtgtggtcGacatgtttctggatcccgca	14	9	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	43453450	43453450	G	C	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.5	p.S2W	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	14	0	0	36	14	28	-	-	-	C	43453450	G	C	43453450	3	2	748	1	0	0	0	0	1	0	0	0	17743	1059	37	3	1487	3	ZFP36L2	2	43453450	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4403106	43453450	199745923	40	65587										
PLEKHH2	0	genome.wustl.edu	37	chr2	43934621	43934621	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acagctccagatccagctccCggacgtcagagtcagactca	9	15	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	43934621	43934621	C	G	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.1903	p.R635G	0.998	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	65	0	0	83	15	15.31	-	-	-	G	43934621	C	G	43934621	3	3	748	1	0	0	0	0	1	0	0	0	12151	643	23	3	1941	3	PLEKHH2	2	43934621	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	481171	43934621	199264752	41	65588										
LRPPRC	0	genome.wustl.edu	37	chr2	44121732	44121732	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttcttccttttcatttaattCaggaatcaattctaacacag	3	9	5	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	44121732	44121732	C	G	SNP	LRPPRC	ENST00000260665	human	ensembl	69_37n	-1	known	missense	c.3937	p.E1313Q	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	204	0	0	116	21	15.33	-	-	-	G	44121732	C	G	44121732	3	3	748	1	0	0	0	0	1	0	0	0	9031	835	29	2	259	2	LRPPRC	2	44121732	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	187111	44121732	199077641	42	65589										
LHCGR	0	genome.wustl.edu	37	chr2	48915942	48915942	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gggtaagcagaaaccatattCatagtcccagccactcagtt	8	11	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	48915942	48915942	C	G	SNP	LHCGR	ENST00000294954	human	ensembl	69_37n	-1	known	missense	c.994	p.E332Q	1.000	prints_LSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_LSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	LHCGR	HGNC	ENSG00000138039	104	0	0	102	22	17.74	-	-	-	G	48915942	C	G	48915942	3	3	748	1	0	0	0	0	1	0	0	0	8817	835	29	2	1109	2	LHCGR	2	48915942	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4794210	48915942	194283431	43	65590										
XPO1	0	genome.wustl.edu	37	chr2	61715794	61715794	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	taagcatatctaaataaattCttccaagctgaattacaaag	4	7	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	61715794	61715794	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.2135	p.R712K	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	107	0	0	91	25	21.55	-	-	-	T	61715794	C	T	61715794	3	4	748	1	0	0	0	0	1	0	0	0	17542	913	32	2	1112	2	XPO1	2	61715794	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	12799852	61715794	181483579	44	65591										
MDH1	0	genome.wustl.edu	37	chr2	63824532	63824532	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tatttattgccatgtccacaGatgtcatcgcaacagataaa	6	9	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	63824532	63824532	G	A	SNP	MDH1	ENST00000539945	human	ensembl	69_37n	1	known	splice_site	c.254-1	e4-1	1.000	-	-	-	no_errors	MDH1	HGNC	ENSG00000014641	55	0	0	55	11	16.67	-	-	-	A	63824532	G	A	63824532	5	1	748	1	0	0	0	0	0	0	1	0	9479	956	33	2	213	2	MDH1	2	63824532	Splice_Site	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2108738	63824532	179374841	45	65592										
ACTG2	0	genome.wustl.edu	37	chr2	74141897	74141897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggccacagcagcttcctcttCctccctggagaagagctatg	10	14	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	74141897	74141897	C	T	SNP	ACTG2	ENST00000345517	human	ensembl	69_37n	1	known	missense	c.704	p.S235F	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG2	HGNC	ENSG00000163017	38	0	0	69	17	19.77	-	-	-	T	74141897	C	T	74141897	3	4	748	1	0	0	0	0	1	0	0	0	197	855	30	2	726	2	ACTG2	2	74141897	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10317365	74141897	169057476	46	65593										
DCTN1	0	genome.wustl.edu	37	chr2	74594520	74594520	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catagtacagtcctcaggctGttcggcaaggtggatgctgt	13	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	74594520	74594520	G	A	SNP	DCTN1	ENST00000361874	human	ensembl	69_37n	-1	known	nonsense	c.2212	p.Q738*	0.998	pfam_Dynactin	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843	70	0	0	135	34	20.12	-	-	-	A	74594520	G	A	74594520	4	1	748	1	0	0	0	0	0	1	0	0	4337	1386	48	4	1680	4	DCTN1	2	74594520	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	452623	74594520	168604853	47	65594										
CTNNA2	0	genome.wustl.edu	37	chr2	80097054	80097054	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	taactatgtagcagcaagaaGacaacaggtgggaaagattt	11	5	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	80097054	80097054	G	T	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.680	p.R227I	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	97	0	0	88	16	15.38	-	-	-	T	80097054	G	T	80097054	3	4	748	1	0	0	0	0	1	0	0	0	4045	942	33	2	592	2	CTNNA2	2	80097054	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	5502534	80097054	163102319	48	65595										
CIAO1	0	genome.wustl.edu	37	chr2	96936858	96936858	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttccttccaggtgtcagctGacaggggctctggccacagc	12	13	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	96936858	96936858	G	A	SNP	CIAO1	ENST00000488633	human	ensembl	69_37n	1	known	silent	c.789	p.L263	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	9	0	0	22	9	29.03	-	-	-	A	96936858	G	A	96936858	2	1	748	1	0	0	0	0	0	0	0	1	3447	1277	45	2		2	CIAO1	2	96936858	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	16839804	96936858	146262515	49	65596										
HS6ST1	0	genome.wustl.edu	37	chr2	129026048	129026048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggccggatgaacttgaggttGaacgtccgctcgaacaggta	14	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	129026048	129026048	G	C	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.924	p.F308L	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	14	0	0	31	9	22.5	-	-	-	C	129026048	G	C	129026048	3	2	748	1	0	0	0	0	1	0	0	0	7421	1281	45	2	315	2	HS6ST1	2	129026048	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	32089190	129026048	114173325	50	65597										
ZRANB3	0	genome.wustl.edu	37	chr2	135957946	135957946	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaaatcgtgtgatgtctgatCcatgctttgatgctagagat	10	6	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	135957946	135957946	C	A	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	missense	c.3206	p.G1069V	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	312	0	0	226	64	21.99	-	-	-	A	135957946	C	A	135957946	3	1	748	1	0	0	0	0	1	0	0	0	18317	855	30	2	37	2	ZRANB3	2	135957946	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	6931898	135957946	107241427	51	65598										
CYTIP	0	genome.wustl.edu	37	chr2	158272514	158272514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttcactgtccatcgtcatgGagctcagccagctcttacag	8	14	4	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	158272514	158272514	G	A	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	missense	c.755	p.S252F	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	23	0	0	48	8	14.29	-	-	-	A	158272514	G	A	158272514	3	1	748	1	0	0	0	0	1	0	0	0	4238	1174	41	2	328	2	CYTIP	2	158272514	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	22314568	158272514	84926859	52	65599										
RBMS1	0	genome.wustl.edu	37	chr2	161135089	161135089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgcctagtgacagatgactCatctgctgggccagagggct	13	11	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	161135089	161135089	C	G	SNP	RBMS1	ENST00000392753	human	ensembl	69_37n	-1	known	missense	c.1071	p.M357I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250	63	0	0	158	34	17.71	-	-	-	G	161135089	C	G	161135089	3	3	748	1	0	0	0	0	1	0	0	0	13231	826	29	2	200	2	RBMS1	2	161135089	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2862575	161135089	82064284	53	65600										
SCN3A	0	genome.wustl.edu	37	chr2	165946941	165946941	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ataacatctgaaattacgctGaatgatagcggcagacacct	8	9	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	165946941	165946941	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	nonsense	c.5722	p.Q1908*	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	132	0	0	67	22	24.72	-	-	-	A	165946941	G	A	165946941	4	1	748	1	0	0	0	0	0	1	0	0	14006	1299	45	2	284	2	SCN3A	2	165946941	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4811852	165946941	77252432	54	65601										
XIRP2	0	genome.wustl.edu	37	chr2	168102468	168102468	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaaatccctccttctgatgtCaaaacaaccacatggctctt	5	13	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	168102468	168102468	C	G	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	silent	c.4566	p.V1522	0.967	pfam_Actin-binding_Xin_repeat	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	63	0	0	16	5	22.73	-	-	-	G	168102468	C	G	168102468	2	3	748	1	0	0	0	0	0	0	0	1	17527	813	29	2		2	XIRP2	2	168102468	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2155527	168102468	75096905	55	65602										
XIRP2	0	genome.wustl.edu	37	chr2	168105425	168105425	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acacacagttccaggaacttCagcacccaggaaaaaacaga	7	12	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	168105425	168105425	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.7523	p.S2508L	0.008	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	91	0	0	49	9	15.52	-	-	-	T	168105425	C	T	168105425	3	4	748	1	0	0	0	0	1	0	0	0	17527	838	29	2	7553	2	XIRP2	2	168105425	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2957	168105425	75093948	56	65603										
TTN	0	genome.wustl.edu	37	chr2	179452019	179452019	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccatgtctttctgtctgcctCacgtttctccacgatataat	5	13	5	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	179452019	179452019	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.56215	p.E18739K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	87	0	0	81	15	15.62	-	-	-	T	179452019	C	T	179452019	3	4	748	1	0	0	0	0	1	0	0	0	16832	835	29	2	44284	2	TTN	2	179452019	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	11346594	179452019	63747354	57	65604										
DNAH7	0	genome.wustl.edu	37	chr2	196699060	196699060	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcctgactttgaggatctatCatcagaggccaccttcttgc	9	12	4	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	196699060	196699060	C	G	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.8970	p.M2990I	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	180	0	0	132	28	17.5	-	-	-	G	196699060	C	G	196699060	3	3	748	1	0	0	0	0	1	0	0	0	4641	826	29	2	3176	2	DNAH7	2	196699060	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	17247041	196699060	46500313	58	65605										
DNAH7	0	genome.wustl.edu	37	chr2	196825113	196825113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgtcccagtttctctataaGaatggatgacaaattccact	6	9	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	196825113	196825113	G	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.2762	p.S921C	0.224	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	95	0	0	77	13	14.44	-	-	-	C	196825113	G	C	196825113	3	2	748	1	0	0	0	0	1	0	0	0	4641	942	33	2	9504	2	DNAH7	2	196825113	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	126053	196825113	46374260	59	65606										
SLC4A3	0	genome.wustl.edu	37	chr2	220501551	220501551	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caggagatctttgcctttctCatctcactcattttcatcta	4	12	6	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	220501551	220501551	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	silent	c.2571	p.L857	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	58	0	0	124	38	23.46	-	-	-	T	220501551	C	T	220501551	2	4	748	1	0	0	0	0	0	0	0	1	14744	813	29	2		2	SLC4A3	2	220501551	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	23676438	220501551	22697822	60	65607										
PSMD1	0	genome.wustl.edu	37	chr2	231940241	231940241	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcagtgactcgatggaaacaGaagaaaagacaagcagtgca	11	7	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	2	231940241	231940241	G	C	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	1	known	missense	c.898	p.E300Q	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	153	0	0	81	24	22.86	-	-	-	C	231940241	G	C	231940241	3	2	748	1	0	0	0	0	1	0	0	0	12772	943	33	2	928	2	PSMD1	2	231940241	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11438690	231940241	11259132	61	65608										
FANCD2	0	genome.wustl.edu	37	chr3	10107574	10107574	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctatattcctaactgacctgGagcctggagagaagttggag	12	8	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	10107574	10107574	G	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	nonsense	c.2296	p.E766*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	162	0	0	145	39	21.08	-	-	-	T	10107574	G	T	10107574	4	4	748	1	0	0	0	0	0	1	0	0	5711	1175	41	2	2390	2	FANCD2	3	10107574	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		10107574	187914856	62	65609										
CAND2	0	genome.wustl.edu	37	chr3	12866971	12866971	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcatgttcttctgccaggaGagttcatggagagcctgcag	12	10	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	12866971	12866971	G	C	SNP	CAND2	ENST00000456430	human	ensembl	69_37n	1	known	missense	c.3043	p.E1015Q	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	23	0	0	48	20	29.41	-	-	-	C	12866971	G	C	12866971	3	2	748	1	0	0	0	0	1	0	0	0	2641	943	33	2	3089	2	CAND2	3	12866971	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2759397	12866971	185155459	63	65610										
KAT2B	0	genome.wustl.edu	37	chr3	20167519	20167519	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaaccaaacaagaagatcctGatgtggctggttggcctaca	10	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	20167519	20167519	G	T	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	silent	c.1536	p.L512	1.000	pirsf_Hist_acetylase_PCAF,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	61	0	0	57	14	19.72	-	-	-	T	20167519	G	T	20167519	2	4	748	1	0	0	0	0	0	0	0	1	8036	1277	45	2		2	KAT2B	3	20167519	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7300548	20167519	177854911	64	65611										
ZCWPW2	0	genome.wustl.edu	37	chr3	28562576	28562576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acctgatgaatcagaagaagGacatggagaggaaataaata	11	4	1	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	28562576	28562576	G	A	SNP	ZCWPW2	ENST00000383768	human	ensembl	69_37n	1	known	missense	c.878	p.G293E	0.000	NULL	pfam_Znf_CW,pfam_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559	194	0	0	78	27	25.47	-	-	-	A	28562576	G	A	28562576	3	1	748	1	0	0	0	0	1	0	0	0	17694	1174	41	2	904	2	ZCWPW2	3	28562576	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8395057	28562576	169459854	65	65612										
SCN10A	0	genome.wustl.edu	37	chr3	38755529	38755529	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggctttgatgggagccacttCagaatattccagaatcttcg	10	9	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	38755529	38755529	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3724	p.E1242K	0.505	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	50	0	0	49	19	27.94	-	-	-	T	38755529	C	T	38755529	3	4	748	1	0	0	0	0	1	0	0	0	14000	835	29	2	2174	2	SCN10A	3	38755529	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10192953	38755529	159266901	66	65613										
TDGF1	0	genome.wustl.edu	37	chr3	46620626	46620626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttctaaagtctttgaactggGattagttgccggtgagagac	12	6	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	46620626	46620626	G	A	SNP	TDGF1	ENST00000296145	human	ensembl	69_37n	1	known	missense	c.77	p.G26E	0.916	pirsf_Cripto_growth_factor	pfam_Cryptic/Cripto_CFC-dom,pirsf_Cripto_growth_factor,pfscan_EG-like_dom	-	no_errors	TDGF1	HGNC	ENSG00000241186	345	0	0	226	64	21.99	-	-	-	A	46620626	G	A	46620626	3	1	748	1	0	0	0	0	1	0	0	0	15821	1174	41	2	83	2	TDGF1	3	46620626	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7865097	46620626	151401804	67	65614										
PTH1R	0	genome.wustl.edu	37	chr3	46937242	46937242	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagccagcataatggaatcaGacaagggatggacatctgcg	12	9	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	46937242	46937242	G	A	SNP	PTH1R	ENST00000313049	human	ensembl	69_37n	1	known	missense	c.196	p.D66N	0.974	pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_parathyroid_rcpt	-	no_errors	PTH1R	HGNC	ENSG00000160801	54	0	0	67	25	27.17	-	-	-	A	46937242	G	A	46937242	3	1	748	1	0	0	0	0	1	0	0	0	12839	942	33	2	206	2	PTH1R	3	46937242	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	316616	46937242	151085188	68	65615										
KLHL18	0	genome.wustl.edu	37	chr3	47385248	47385248	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtccccatgcacacgcgcagGagccgggtctccctggtggc	14	16	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	47385248	47385248	G	A	SNP	KLHL18	ENST00000232766	human	ensembl	69_37n	1	known	silent	c.1542	p.R514	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648	18	0	0	41	12	22.64	-	-	-	A	47385248	G	A	47385248	2	1	748	1	0	0	0	0	0	0	0	1	8426	1165	41	2		2	KLHL18	3	47385248	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	448006	47385248	150637182	69	65616										
MAP4	0	genome.wustl.edu	37	chr3	48040186	48040186	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gactctgagttcccggttttCtcatcaacatccaggagagg	10	11	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	48040186	48040186	C	T	SNP	MAP4	ENST00000423088	human	ensembl	69_37n	-1	putative	missense	c.185	p.R62K	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4	HGNC	ENSG00000047849	229	0	0	137	50	26.74	-	-	-	T	48040186	C	T	48040186	3	4	748	1	0	0	0	0	1	0	0	0	9329	912	32	2	4736	2	MAP4	3	48040186	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	654938	48040186	149982244	70	65617										
MST1	0	genome.wustl.edu	37	chr3	49724598	49724598	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttaccctcccggcaggatttGatgccgcagctctggaagcg	12	13	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	49724598	49724598	G	C	SNP	MST1	ENST00000545762	human	ensembl	69_37n	-1	known	nonsense	c.434	p.S145*	1.000	NULL	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	-	no_errors	MST1	HGNC	ENSG00000173531	12	0	0	33	20	37.74	-	-	-	C	49724598	G	C	49724598	4	2	748	1	0	0	0	0	0	1	0	0	9962	1280	45	2	1642	2	MST1	3	49724598	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1684412	49724598	148297832	71	65618										
MST1R	0	genome.wustl.edu	37	chr3	49933743	49933743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agccagcagctccatcccctCgggcactcagattccctgcc	8	19	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	49933743	49933743	C	T	SNP	MST1R	ENST00000296474	human	ensembl	69_37n	-1	known	missense	c.2534	p.R845Q	0.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	26	0	0	35	21	36.84	-	-	-	T	49933743	C	T	49933743	3	4	748	1	0	0	0	0	1	0	0	0	9963	884	31	1	1712	1	MST1R	3	49933743	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	209145	49933743	148088687	72	65619										
CADPS	0	genome.wustl.edu	37	chr3	62543150	62543150	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcctgaggctccgctttcttCtcccgataactgcacatggc	8	15	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	62543150	62543150	C	G	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.1683	p.E561D	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	91	0	0	107	33	23.57	-	-	-	G	62543150	C	G	62543150	3	3	748	1	0	0	0	0	1	0	0	0	2595	912	32	2	2535	2	CADPS	3	62543150	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	12609407	62543150	135479280	73	65620										
DZIP3	0	genome.wustl.edu	37	chr3	108407718	108407718	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtgtgatctgtcatgagaatCtgtctccagaaaatctttca	8	8	6	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	108407718	108407718	C	T	SNP	DZIP3	ENST00000361582	human	ensembl	69_37n	1	known	silent	c.3463	p.L1155	0.997	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919	152	0	0	139	35	20.11	-	-	-	T	108407718	C	T	108407718	2	4	748	1	0	0	0	0	0	0	0	1	4900	912	32	2		2	DZIP3	3	108407718	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	45864568	108407718	89614712	74	65621										
LSAMP	0	genome.wustl.edu	37	chr3	115529227	115529227	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cacagtggtacggccagactGatggatccatttattcctct	9	11	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	115529227	115529227	G	A	SNP	LSAMP	ENST00000490035	human	ensembl	69_37n	-1	known	silent	c.954	p.I318	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LSAMP	HGNC	ENSG00000185565	14	0	0	27	5	15.62	-	-	-	A	115529227	G	A	115529227	2	1	748	1	0	0	0	0	0	0	0	1	9114	1280	45	2		2	LSAMP	3	115529227	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7121509	115529227	82493203	75	65622										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	130	0	0	39	22	36.07	-	-	-	A	178936091	G	A	178936091	3	1	748	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	63406864	178936091	19086339	76	65623										
SOX2	0	genome.wustl.edu	37	chr3	181430398	181430398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccgagtggaaacttttgtcgGagacggagaagcggccgttc	15	9	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	3	181430398	181430398	G	A	SNP	SOX2	ENST00000325404	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_TF_SOX,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX2	HGNC	ENSG00000181449	18	0	0	28	10	26.32	-	-	-	A	181430398	G	A	181430398	3	1	748	1	0	0	0	0	1	0	0	0	15038	1175	41	2	252	2	SOX2	3	181430398	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2494307	181430398	16592032	77	65624										
WHSC1	0	genome.wustl.edu	37	chr4	1976719	1976719	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgggcctgtttgccgtctgtGacattcctgcaggtacaagc	12	11	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	1976719	1976719	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	69_37n	1	known	missense	c.3502	p.D1168N	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_superfamily,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_PWWP,smart_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_superfamily	-	no_errors	WHSC1	HGNC	ENSG00000109685	35	0	0	70	17	19.54	-	-	-	A	1976719	G	A	1976719	3	1	748	1	0	0	0	0	1	0	0	0	17459	1290	45	2	3648	2	WHSC1	4	1976719	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		1976719	189177557	78	65625										
NOP14	0	genome.wustl.edu	37	chr4	2951877	2951877	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	accttcttcctcgttgctctCagggtcactggcttccttgc	8	15	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	2951877	2951877	C	T	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	missense	c.1066	p.E356K	0.005	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	228	0	0	316	73	18.77	-	-	-	T	2951877	C	T	2951877	3	4	748	1	0	0	0	0	1	0	0	0	10608	835	29	2	1551	2	NOP14	4	2951877	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	975158	2951877	188202399	79	65626										
TECRL	0	genome.wustl.edu	37	chr4	65175565	65175565	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	attatcaaatttttcaaaggTgtgtgtcctgcagaaacttt	7	6	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	65175565	65175565	T	C	SNP	TECRL	ENST00000381210	human	ensembl	69_37n	-1	known	silent	c.636	p.T212	0.999	pfam_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	172	0	0	70	32	31.37	-	-	-	C	65175565	T	C	65175565	2	2	748	1	0	0	0	0	0	0	0	1	15841	1683	59	5		5	TECRL	4	65175565	Silent	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	62223688	65175565	125978711	80	65627										
EPGN	0	genome.wustl.edu	37	chr4	75174841	75174841	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgaccgaagaggcagccgtGactgtaacacctccaatcac	9	14	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	75174841	75174841	G	A	SNP	EPGN	ENST00000446430	human	ensembl	69_37n	1	novel	missense	c.28	p.D10N	0.000	NULL	pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPGN	HGNC	ENSG00000182585	42	0	0	58	9	13.24	-	-	-	A	75174841	G	A	75174841	3	1	748	1	0	0	0	0	1	0	0	0	5201	1277	45	2	81	2	EPGN	4	75174841	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	9999276	75174841	115979435	81	65628										
ANXA3	0	genome.wustl.edu	37	chr4	79522719	79522719	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaaagactgcatcgagccttGaaggttggtctggaaagttc	13	7	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	79522719	79522719	G	C	SNP	ANXA3	ENST00000264908	human	ensembl	69_37n	1	known	missense	c.786	p.L262F	1.000	pfam_Annexin_repeat,superfamily_Annexin,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIII	-	no_errors	ANXA3	HGNC	ENSG00000138772	211	0	0	164	51	23.72	-	-	-	C	79522719	G	C	79522719	3	2	748	1	0	0	0	0	1	0	0	0	718	1281	45	2	824	2	ANXA3	4	79522719	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4347878	79522719	111631557	82	65629										
TRPC3	0	genome.wustl.edu	37	chr4	122825623	122825623	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gagcacaacggaagtcacttCagacaacccaaatattgacc	7	12	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	122825623	122825623	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	69_37n	-1	known	missense	c.2107	p.E703K	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	159	1	0.62	75	21	21.88	-	-	-	T	122825623	C	T	122825623	3	4	748	1	0	0	0	0	1	0	0	0	16675	835	29	2	678	2	TRPC3	4	122825623	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	43302904	122825623	68328653	83	65630										
DDX60	0	genome.wustl.edu	37	chr4	169183193	169183193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atccaacttgttaattctgcCtttagactctcttcatattt	3	10	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	4	169183193	169183193	C	G	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	missense	c.3231	p.K1077N	0.786	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	391	0	0	140	39	21.79	-	-	-	G	169183193	C	G	169183193	3	3	748	1	0	0	0	0	1	0	0	0	4409	680	24	4	1967	4	DDX60	4	169183193	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	46357570	169183193	21971083	84	65631										
TERT	0	genome.wustl.edu	37	chr5	1260685	1260685	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttgaagccgcggttgaaggtGagactggctctgatggaggt	17	6	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	1260685	1260685	G	C	SNP	TERT	ENST00000310581	human	ensembl	69_37n	-1	known	silent	c.2874	p.L958	0.941	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,prints_Telomerase_RT,pfscan_RVT	-	no_errors	TERT	HGNC	ENSG00000164362	26	0	0	56	15	21.13	-	-	-	C	1260685	G	C	1260685	2	2	748	1	0	0	0	0	0	0	0	1	15859	1277	45	2		2	TERT	5	1260685	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		1260685	179654575	85	65632										
CTNND2	0	genome.wustl.edu	37	chr5	11018106	11018106	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctttttgtagagactcctcaGatctcggtactgccacatgc	8	12	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	11018106	11018106	G	C	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.3064	p.L1022V	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	76	0	0	111	25	18.38	-	-	-	C	11018106	G	C	11018106	3	2	748	1	0	0	0	0	1	0	0	0	4052	933	33	2	633	2	CTNND2	5	11018106	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	9757421	11018106	169897154	86	65633										
PDZD2	0	genome.wustl.edu	37	chr5	32000267	32000267	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atggcaggctgtccttaggaGatgagctgctggtaatcaat	13	7	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	32000267	32000267	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.1144	p.D382N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	59	0	0	103	26	20.16	-	-	-	A	32000267	G	A	32000267	3	1	748	1	0	0	0	0	1	0	0	0	11774	942	33	2	1158	2	PDZD2	5	32000267	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	20982161	32000267	148914993	87	65634										
C5orf42	0	genome.wustl.edu	37	chr5	37180152	37180152	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tatgtgcatatccatttcctCttctgtaaatgcttctactt	4	10	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	37180152	37180152	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.5704	p.E1902K	0.738	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	156	0	0	107	14	11.57	-	-	-	T	37180152	C	T	37180152	3	4	748	1	0	0	0	0	1	0	0	0	2322	922	32	2	3989	2	C5orf42	5	37180152	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5179885	37180152	143735108	88	65635										
LIFR	0	genome.wustl.edu	37	chr5	38504178	38504178	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagaaagtttaacagctgttGaattaatatccttcactttg	6	6	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	38504178	38504178	G	C	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	nonsense	c.1337	p.S446*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	109	0	0	51	6	10.53	-	-	-	C	38504178	G	C	38504178	4	2	748	1	0	0	0	0	0	1	0	0	8835	1294	45	2	2000	2	LIFR	5	38504178	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1324026	38504178	142411082	89	65636										
DAB2	0	genome.wustl.edu	37	chr5	39375157	39375157	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccaaatggatccctatacatCtcagaagatacaggttgaga	8	9	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	39375157	39375157	C	G	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	missense	c.2277	p.E759D	0.963	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	187	0	0	107	30	21.9	-	-	-	G	39375157	C	G	39375157	3	3	748	1	0	0	0	0	1	0	0	0	4250	912	32	2	39	2	DAB2	5	39375157	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	870979	39375157	141540103	90	65637										
IQGAP2	0	genome.wustl.edu	37	chr5	75906999	75906999	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttataccatgctaaatcacaGaaactcggagtaagttttag	7	7	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	75906999	75906999	G	A	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	silent	c.1512	p.Q504	0.961	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	151	0	0	111	35	23.97	-	-	-	A	75906999	G	A	75906999	2	1	748	1	0	0	0	0	0	0	0	1	7869	933	33	2		2	IQGAP2	5	75906999	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	36531842	75906999	105008261	91	65638										
PDE8B	0	genome.wustl.edu	37	chr5	76700558	76700558	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tccttagagcctcattcattCagatataagaacaggaggaa	8	8	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	76700558	76700558	C	T	SNP	PDE8B	ENST00000264917	human	ensembl	69_37n	1	known	silent	c.1224	p.F408	0.992	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,prints_PDEase,pfscan_PAS,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231	146	0	0	77	20	20.62	-	-	-	T	76700558	C	T	76700558	2	4	748	1	0	0	0	0	0	0	0	1	11727	825	29	2		2	PDE8B	5	76700558	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	793559	76700558	104214702	92	65639										
RAPGEF6	0	genome.wustl.edu	37	chr5	130857085	130857085	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaattcctaaggtattacctGatagatatcagataaactgc	6	7	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	130857085	130857085	G	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.625	p.Q209E	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	74	0	0	38	15	28.3	-	-	-	C	130857085	G	C	130857085	3	2	748	1	0	0	0	0	1	0	0	0	13131	1299	45	2	4754	2	RAPGEF6	5	130857085	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	54156527	130857085	50058175	93	65640										
PCDHGB1	0	genome.wustl.edu	37	chr5	140730032	140730032	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaaaactgcgggttagtgcaGaggattatttcaacgttagt	12	5	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	140730032	140730032	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	missense	c.205	p.E69K	0.994	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	130	1	0.76	100	44	30.56	-	-	-	A	140730032	G	A	140730032	3	1	748	1	0	0	0	0	1	0	0	0	11635	943	33	2	207	2	PCDHGB1	5	140730032	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	9872947	140730032	40185228	94	65641										
PCDHGB6	0	genome.wustl.edu	37	chr5	140790173	140790173	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggatttgacttcacatcctGagactctgacttcggtgagt	10	9	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	140790173	140790173	G	C	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	1	known	missense	c.2404	p.E802Q	0.195	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	148	0	0	104	24	18.75	-	-	-	C	140790173	G	C	140790173	3	2	748	1	0	0	0	0	1	0	0	0	11640	1291	45	2	2406	2	PCDHGB6	5	140790173	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	60141	140790173	40125087	95	65642										
SLC36A2	0	genome.wustl.edu	37	chr5	150696593	150696593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggccagggcggtgccactcaCggagcccaccagggagatga	16	13	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	150696593	150696593	C	T	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	missense	c.1237	p.V413M	0.954	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	44	0	0	66	15	18.52	-	-	-	T	150696593	C	T	150696593	3	4	748	1	0	0	0	0	1	0	0	0	14683	536	19	1	218	1	SLC36A2	5	150696593	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9906420	150696593	30218667	96	65643										
UBLCP1	0	genome.wustl.edu	37	chr5	158697440	158697440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atattgaagatgaagtagttGaagtagaaaataggtaagtg	12	0	0	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	5	158697440	158697440	G	A	SNP	UBLCP1	ENST00000296786	human	ensembl	69_37n	1	known	missense	c.319	p.E107K	1.000	NULL	pfam_NIF,pfam_Ubiquitin,superfamily_HAD-like_dom,smart_Ubiquitin,smart_NIF,pfscan_NIF,pfscan_Ubiquitin_supergroup,tigrfam_HAD-SF_hydro_IIID	-	no_errors	UBLCP1	HGNC	ENSG00000164332	291	0	0	134	31	18.79	-	-	-	A	158697440	G	A	158697440	3	1	748	1	0	0	0	0	1	0	0	0	16988	1291	45	2	329	2	UBLCP1	5	158697440	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8000847	158697440	22217820	97	65644										
LRRC16A	0	genome.wustl.edu	37	chr6	25510753	25510753	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggtttagaatctgacctatCtaccttaatagtgtggctca	8	8	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	25510753	25510753	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.1496	p.S499F	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	263	0	0	102	28	21.54	-	-	-	T	25510753	C	T	25510753	3	4	748	1	0	0	0	0	1	0	0	0	9037	913	32	2	1570	2	LRRC16A	6	25510753	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		25510753	145604314	98	65645										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032049	26032049	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctctggaagcgaagatcggtCttgaagtcttgggcgatttc	13	8	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	26032049	26032049	C	G	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.240	p.K80N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	31	0	0	42	19	31.15	-	-	-	G	26032049	C	G	26032049	3	3	748	1	0	0	0	0	1	0	0	0	7207	912	32	2	174	2	HIST1H3B	6	26032049	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	521296	26032049	145083018	99	65646										
HIST1H2AB	0	genome.wustl.edu	37	chr6	26033433	26033433	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttggccttatgatggctctCagttttcttaggcagcagca	10	10	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	26033433	26033433	C	G	SNP	HIST1H2AB	ENST00000259791	human	ensembl	69_37n	-1	known	missense	c.364	p.E122Q	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AB	HGNC	ENSG00000137259	26	0	0	68	14	17.07	-	-	-	G	26033433	C	G	26033433	3	3	748	1	0	0	0	0	1	0	0	0	7180	835	29	2	32	2	HIST1H2AB	6	26033433	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1384	26033433	145081634	100	65647										
NOTCH4	0	genome.wustl.edu	37	chr6	32190850	32190850	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcacagggttctgggaaactCccacacagcagccctgaggg	13	13	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	32190850	32190850	C	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	0.000	smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	11	0	0	70	16	18.6	-	-	-	G	32190850	C	G	32190850	2	3	748	1	0	0	0	0	0	0	0	1	10623	842	30	2		2	NOTCH4	6	32190850	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	6157417	32190850	138924217	101	65648										
HLA-DMB	0	genome.wustl.edu	37	chr6	32904950	32904950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccatctgccatacacttactCcagtcccgaaggatgggctc	8	15	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	32904950	32904950	C	G	SNP	HLA-DMB	ENST00000418107	human	ensembl	69_37n	-1	known	missense	c.621	p.W207C	1.000	NULL	pfam_Ig_C1-set,pfam_MHC_II_b_N,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DMB	HGNC	ENSG00000242574	29	0	0	55	8	12.7	-	-	-	G	32904950	C	G	32904950	3	3	748	1	0	0	0	0	1	0	0	0	7250	869	30	2	186	2	HLA-DMB	6	32904950	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	714100	32904950	138210117	102	65649										
SLC39A7	0	genome.wustl.edu	37	chr6	33169325	33169325	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggctactcccatgagagcctCtaccacagaggacatggaca	10	13	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	33169325	33169325	C	G	SNP	SLC39A7	ENST00000374675	human	ensembl	69_37n	1	known	silent	c.303	p.L101	0.672	NULL	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473	17	0	0	76	22	22.45	-	-	-	G	33169325	C	G	33169325	2	3	748	1	0	0	0	0	0	0	0	1	14712	900	32	2		2	SLC39A7	6	33169325	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	264375	33169325	137945742	103	65650										
BAI3	0	genome.wustl.edu	37	chr6	69349121	69349121	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttaaaatcagaaaatgggaGaacagaatcatgtgggatca	10	5	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	69349121	69349121	G	A	SNP	BAI3	ENST00000370598	human	ensembl	69_37n	1	known	missense	c.554	p.R185K	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	29	0	0	24	8	25	-	-	-	A	69349121	G	A	69349121	3	1	748	1	0	0	0	0	1	0	0	0	1304	942	33	2	556	2	BAI3	6	69349121	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	36179796	69349121	101765946	104	65651										
IBTK	0	genome.wustl.edu	37	chr6	82927697	82927697	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctttcttttcagaactctttCttttctcttcaaaccatctc	1	13	7	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	82927697	82927697	C	G	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.1406	p.R469T	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	339	0	0	214	62	22.46	-	-	-	G	82927697	C	G	82927697	3	3	748	1	0	0	0	0	1	0	0	0	7530	913	32	2	2735	2	IBTK	6	82927697	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	13578576	82927697	88187370	105	65652										
NT5E	0	genome.wustl.edu	37	chr6	86197154	86197154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tctatctggatggctcctctCaatcatgccgctttagagaa	8	11	4	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	86197154	86197154	C	G	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	1	known	missense	c.1051	p.Q351E	0.000	pfam_5'-Nucleotdase_C,superfamily_5'-Nucleotdase_C	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	124	1	0.8	111	32	22.22	-	-	-	G	86197154	C	G	86197154	3	3	748	1	0	0	0	0	1	0	0	0	10766	827	29	2	1069	2	NT5E	6	86197154	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3269457	86197154	84917913	106	65653										
DSE	0	genome.wustl.edu	37	chr6	116757151	116757151	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcaggtcacagaagactgctCatcaaaatggtctaaataca	7	9	5	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	116757151	116757151	C	T	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	missense	c.1577	p.S526L	0.997	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	33	0	0	31	7	18.42	-	-	-	T	116757151	C	T	116757151	3	4	748	1	0	0	0	0	1	0	0	0	4809	838	29	2	1538	2	DSE	6	116757151	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	30559997	116757151	54357916	107	65654										
RFX6	0	genome.wustl.edu	37	chr6	117232129	117232129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcgtaaatattcgcttagctCaaaaactggaacacttcttc	5	10	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	117232129	117232129	C	T	SNP	RFX6	ENST00000332958	human	ensembl	69_37n	1	known	missense	c.704	p.S235L	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	195	0	0	119	21	15	-	-	-	T	117232129	C	T	117232129	3	4	748	1	0	0	0	0	1	0	0	0	13350	838	29	2	730	2	RFX6	6	117232129	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	474978	117232129	53882938	108	65655										
TAAR2	0	genome.wustl.edu	37	chr6	132938838	132938838	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaggcaaatgctccagggacCgaccaacatagaagtagcaa	10	10	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	132938838	132938838	C	A	SNP	TAAR2	ENST00000367931	human	ensembl	69_37n	-1	known	silent	c.507	p.S169	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Trace_amine_rcpt	-	no_errors	TAAR2	HGNC	ENSG00000146378	84	0	0	45	13	22.41	-	-	-	A	132938838	C	A	132938838	2	1	748	1	0	0	0	0	0	0	0	1	15582	639	23	3		3	TAAR2	6	132938838	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	15706709	132938838	38176229	109	65656										
FBXO30	0	genome.wustl.edu	37	chr6	146126650	146126650	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgtaaattctgattctggtCtatgacctgggtacatatat	8	6	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	146126650	146126650	C	T	SNP	FBXO30	ENST00000237281	human	ensembl	69_37n	-1	known	missense	c.892	p.D298N	0.600	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	129	0	0	109	17	13.49	-	-	-	T	146126650	C	T	146126650	3	4	748	1	0	0	0	0	1	0	0	0	5786	913	32	2	1353	2	FBXO30	6	146126650	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	13187812	146126650	24988417	110	65657										
STXBP5	0	genome.wustl.edu	37	chr6	147660341	147660341	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catcaccacacaattcagatGatgaacaaaaaatgaataat	4	8	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	147660341	147660341	G	A	SNP	STXBP5	ENST00000321680	human	ensembl	69_37n	1	known	missense	c.2173	p.D725N	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	268	1	0.37	149	32	17.68	-	-	-	A	147660341	G	A	147660341	3	1	748	1	0	0	0	0	1	0	0	0	15447	1290	45	2	2251	2	STXBP5	6	147660341	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1533691	147660341	23454726	111	65658										
MRPL18	0	genome.wustl.edu	37	chr6	160218324	160218324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tctcaccccatttaggttgcGagttataaggactcagcatc	8	11	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	160218324	160218324	G	A	SNP	MRPL18	ENST00000367034	human	ensembl	69_37n	1	known	missense	c.245	p.R82Q	0.998	pfam_Ribosomal_L18/L5	pfam_Ribosomal_L18/L5	-	no_errors	MRPL18	HGNC	ENSG00000112110	92	0	0	108	29	21.17	-	-	-	A	160218324	G	A	160218324	3	1	748	1	0	0	0	0	1	0	0	0	9855	1058	37	1	255	1	MRPL18	6	160218324	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	12557983	160218324	10896743	112	65659										
PNLDC1	0	genome.wustl.edu	37	chr6	160240082	160240082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caagtctaccataagtttcaGaatctctgcaagtttgatgt	7	8	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	6	160240082	160240082	G	C	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	1	known	missense	c.1329	p.Q443H	0.108	NULL	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	103	0	0	84	22	20.75	-	-	-	C	160240082	G	C	160240082	3	2	748	1	0	0	0	0	1	0	0	0	12222	933	33	2	1391	2	PNLDC1	6	160240082	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	21758	160240082	10874985	113	65660										
CARD11	0	genome.wustl.edu	37	chr7	2979488	2979488	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cgattttcaatgtcattcttCagttttagagactgatttct	6	7	5	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	2979488	2979488	C	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.593	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	245	0	0	290	38	11.52	-	-	-	T	2979488	C	T	2979488	2	4	748	1	0	0	0	0	0	0	0	1	2670	813	29	2		2	CARD11	7	2979488	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		2979488	156159175	114	65661										
FBXL18	0	genome.wustl.edu	37	chr7	5541259	5541259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggcccaccataagctggcccGagaggatggcgccctcgcgc	14	16	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	5541259	5541259	G	A	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.641	p.S214L	0.995	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	9	0	0	26	6	18.75	-	-	-	A	5541259	G	A	5541259	3	1	748	1	0	0	0	0	1	0	0	0	5760	1059	37	1	1527	1	FBXL18	7	5541259	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2561771	5541259	153597404	115	65662										
THSD7A	0	genome.wustl.edu	37	chr7	11676319	11676319	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcacgctatctccctcacctGaataccttcttcccccttaa	3	18	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	11676319	11676319	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	nonsense	c.460	p.Q154*	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	141	0	0	186	35	15.77	-	-	-	A	11676319	G	A	11676319	4	1	748	1	0	0	0	0	0	1	0	0	15974	1299	45	2	4617	2	THSD7A	7	11676319	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	6135060	11676319	147462344	116	65663										
IL6	0	genome.wustl.edu	37	chr7	22769291	22769291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagaaaaaggtgggtgtgtcCtcattccctcaacttggtgt	11	9	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	22769291	22769291	C	T	SNP	IL6	ENST00000420258	human	ensembl	69_37n	1	known	silent	c.645	p.S215	0.000	smart_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,prints_Interleukin_6,prints_IL6_MGF_GCSF	-	no_errors	IL6	HGNC	ENSG00000136244	171	0	0	233	35	13.06	-	-	-	T	22769291	C	T	22769291	2	4	748	1	0	0	0	0	0	0	0	1	7755	696	24	4		4	IL6	7	22769291	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	11092972	22769291	136369372	117	65664										
STK31	0	genome.wustl.edu	37	chr7	23766900	23766900	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgaagatcagtgttggtacaGatgcaaagtactgaaaatca	10	5	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	23766900	23766900	G	A	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.290	p.R97K	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	294	0	0	264	50	15.87	-	-	-	A	23766900	G	A	23766900	3	1	748	1	0	0	0	0	1	0	0	0	15387	942	33	2	308	2	STK31	7	23766900	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	997609	23766900	135371763	118	65665										
DFNA5	0	genome.wustl.edu	37	chr7	24749906	24749906	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgcgcagcatctggcatgtCtatgaatgcaaactctcgaa	9	10	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	24749906	24749906	C	G	SNP	DFNA5	ENST00000342947	human	ensembl	69_37n	-1	known	missense	c.799	p.D267H	0.016	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	41	0	0	83	24	22.43	-	-	-	G	24749906	C	G	24749906	3	3	748	1	0	0	0	0	1	0	0	0	4490	913	32	2	711	2	DFNA5	7	24749906	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	983006	24749906	134388757	119	65666										
CBX3	0	genome.wustl.edu	37	chr7	26251371	26251371	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggagaattgatgtttctcatGaaatggtgagtatgcagaga	13	3	1	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	26251371	26251371	G	A	SNP	CBX3	ENST00000337620	human	ensembl	69_37n	1	known	missense	c.420	p.M140I	1.000	pfam_Chromo_shadow_dom,superfamily_Chromodomain-like,smart_Chromo_shadow_dom,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX3	HGNC	ENSG00000122565	120	0	0	127	26	16.88	-	-	-	A	26251371	G	A	26251371	3	1	748	1	0	0	0	0	1	0	0	0	2744	1290	45	2	434	2	CBX3	7	26251371	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1501465	26251371	132887292	120	65667										
HOXA13	0	genome.wustl.edu	37	chr7	27237824	27237824	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tatttttaatccattaactaGtggttttcagtttgttgatg	7	4	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	27237824	27237824	G	C	SNP	HOXA13	ENST00000222753	human	ensembl	69_37n	-1	known	missense	c.1160	p.T387S	1.000	NULL	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031	382	0	0	387	74	16.05	-	-	-	C	27237824	G	C	27237824	3	2	748	1	0	0	0	0	1	0	0	0	7342	1029	36	4	10	4	HOXA13	7	27237824	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	986453	27237824	131900839	121	65668										
POM121	0	genome.wustl.edu	37	chr7	72414040	72414040	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcaacgtgagcagcacaactGagagcaaacctgtgtttgga	11	9	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	72414040	72414040	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.3508	p.E1170K	0.016	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	26	0	0	78	18	18.75	-	-	-	A	72414040	G	A	72414040	3	1	748	1	0	0	0	0	1	0	0	0	12313	1291	45	2	2751	2	POM121	7	72414040	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	45176216	72414040	86724623	122	65669										
SRCRB4D	0	genome.wustl.edu	37	chr7	76023178	76023178	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcggcccaggcggcggtggtGagcagtgctgtctcccggga	19	12	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	76023178	76023178	G	C	SNP	SRCRB4D	ENST00000275560	human	ensembl	69_37n	-1	known	silent	c.990	p.L330	0.001	NULL	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	SRCRB4D	HGNC	ENSG00000146700	17	0	0	48	12	20	-	-	-	C	76023178	G	C	76023178	2	2	748	1	0	0	0	0	0	0	0	1	15228	1277	45	2		2	SRCRB4D	7	76023178	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3609138	76023178	83115485	123	65670										
SAMD9	0	genome.wustl.edu	37	chr7	92732458	92732458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaactctgcaatcaaagagtGaatgatgcgtactccacagt	9	9	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	92732458	92732458	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2953	p.H985Y	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	200	0	0	168	42	20	-	-	-	A	92732458	G	A	92732458	3	1	748	1	0	0	0	0	1	0	0	0	13912	1290	45	2	1820	2	SAMD9	7	92732458	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	16709280	92732458	66406205	124	65671										
TRRAP	0	genome.wustl.edu	37	chr7	98529178	98529178	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgacacacgacttggttcgaGaagtcacctctccaaactcc	7	14	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	98529178	98529178	G	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.3742	p.E1248Q	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	17	0	0	54	9	14.29	-	-	-	C	98529178	G	C	98529178	3	2	748	1	0	0	0	0	1	0	0	0	16697	943	33	2	3840	2	TRRAP	7	98529178	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	5796720	98529178	60609485	125	65672										
ARPC1B	0	genome.wustl.edu	37	chr7	98983370	98983370	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agcttcctggtggagcccatCagctgccacgcctggaacaa	11	14	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	98983370	98983370	C	G	SNP	ARPC1B	ENST00000252725	human	ensembl	69_37n	1	known	missense	c.33	p.I11M	1.000	superfamily_WD40_repeat_dom,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1B	HGNC	ENSG00000130429	11	0	0	51	11	17.74	-	-	-	G	98983370	C	G	98983370	3	3	748	1	0	0	0	0	1	0	0	0	974	816	29	2	35	2	ARPC1B	7	98983370	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	454192	98983370	60155293	126	65673										
ZAN	0	genome.wustl.edu	37	chr7	100363041	100363041	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgccctgacacctgccattCaggattctccggcatgttct	8	14	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	100363041	100363041	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.4334	p.S1445L	0.000	pfam_TIL_dom,superfamily_TIL_dom,smart_EGF-like	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	13	0	0	81	20	19.8	-	-	-	T	100363041	C	T	100363041	3	4	748	1	0	0	0	0	1	0	0	0	17610	838	29	2	4420	2	ZAN	7	100363041	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1379671	100363041	58775622	127	65674										
TAS2R16	0	genome.wustl.edu	37	chr7	122635653	122635653	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaggactcaagcacatagatGatcatgaagaagacagtgag	11	6	2	6			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	122635653	122635653	G	A	SNP	TAS2R16	ENST00000249284	human	ensembl	69_37n	-1	known	silent	c.36	p.I12	0.006	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	31	0	0	21	9	29.03	-	-	-	A	122635653	G	A	122635653	2	1	748	1	0	0	0	0	0	0	0	1	15661	1280	45	2		2	TAS2R16	7	122635653	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	22272612	122635653	36503010	128	65675										
PLXNA4	0	genome.wustl.edu	37	chr7	132193072	132193072	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tacaggctcccacaggcaatCagcctgttctccttgtagtc	8	14	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	132193072	132193072	C	G	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	silent	c.381	p.L127	0.998	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	22	0	0	49	10	16.95	-	-	-	G	132193072	C	G	132193072	2	3	748	1	0	0	0	0	0	0	0	1	12196	813	29	2		2	PLXNA4	7	132193072	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9557419	132193072	26945591	129	65676										
AKR1B15	0	genome.wustl.edu	37	chr7	134260625	134260625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	actgatccagtactgccactCcaagggcatcaccgttacgg	9	14	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	134260625	134260625	C	T	SNP	AKR1B15	ENST00000423958	human	ensembl	69_37n	1	known	missense	c.605	p.S202F	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B15	HGNC	ENSG00000227471	82	0	0	140	29	17.16	-	-	-	T	134260625	C	T	134260625	3	4	748	1	0	0	0	0	1	0	0	0	468	855	30	2	711	2	AKR1B15	7	134260625	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2067553	134260625	24878038	130	65677										
NUP205	0	genome.wustl.edu	37	chr7	135261125	135261125	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	attccttgaaagccttgataCagtctagacggggaaagaca	10	8	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	135261125	135261125	C	T	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	nonsense	c.451	p.Q151*	1.000	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	140	0	0	182	32	14.95	-	-	-	T	135261125	C	T	135261125	4	4	748	1	0	0	0	0	0	1	0	0	10832	479	17	4	465	4	NUP205	7	135261125	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1000500	135261125	23877538	131	65678										
MGAM	0	genome.wustl.edu	37	chr7	141736724	141736724	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttgccctacctatacaccctCttcttccgtgctcacagccg	5	18	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	141736724	141736724	C	G	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	silent	c.2178	p.L726	0.987	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	100	0	0	146	26	15.12	-	-	-	G	141736724	C	G	141736724	2	3	748	1	0	0	0	0	0	0	0	1	9612	900	32	2		2	MGAM	7	141736724	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	6475599	141736724	17401939	132	65679										
OR2F1	0	genome.wustl.edu	37	chr7	143657556	143657556	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgcagactgctatcacctttCagctgcccatgtgcagaaac	8	13	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	143657556	143657556	C	T	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	nonsense	c.493	p.Q165*	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	122	0	0	259	46	15.08	-	-	-	T	143657556	C	T	143657556	4	4	748	1	0	0	0	0	0	1	0	0	11069	827	29	2	495	2	OR2F1	7	143657556	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1920832	143657556	15481107	133	65680			1	108		3	3	238	C		3.172646e-06
OR2F1	0	genome.wustl.edu	37	chr7	143657696	143657696	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gttcttctgatgacacccttCtgcctggttcttttgtccta	7	12	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	143657696	143657696	C	T	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	silent	c.633	p.F211	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	275	0	0	355	81	18.58	-	-	-	T	143657696	C	T	143657696	2	4	748	1	0	0	0	0	0	0	0	1	11069	912	32	2		2	OR2F1	7	143657696	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	140	143657696	15480967	134	65681			1	108		3	3	238	C		3.172646e-06
OR2F1	0	genome.wustl.edu	37	chr7	143657793	143657793	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctttccacacgtgtgcctctCacctcacagtggttgccctg	8	16	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	143657793	143657793	C	G	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	1	known	missense	c.730	p.H244D	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	205	0	0	281	68	19.48	-	-	-	G	143657793	C	G	143657793	3	3	748	1	0	0	0	0	1	0	0	0	11069	826	29	2	732	2	OR2F1	7	143657793	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	97	143657793	15480870	135	65682			1	108		3	3	238	C		3.172646e-06
OR2A2	0	genome.wustl.edu	37	chr7	143807338	143807338	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtctcctacatgcacatcctCggggccatcctgaagatcca	8	15	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	143807338	143807338	C	T	SNP	OR2A2	ENST00000408979	human	ensembl	69_37n	1	known	silent	c.663	p.L221	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989	64	0	0	52	17	24.29	-	-	-	T	143807338	C	T	143807338	2	4	748	1	0	0	0	0	0	0	0	1	11050	871	31	1		1	OR2A2	7	143807338	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	149545	143807338	15331325	136	65683										
TPK1	0	genome.wustl.edu	37	chr7	144320315	144320315	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttaaggcacttagtaaagtCagtgtggtcttgatcaggag	12	5	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	144320315	144320315	C	T	SNP	TPK1	ENST00000360057	human	ensembl	69_37n	-1	known	missense	c.298	p.D100N	1.000	pfam_TPK_catalytic,superfamily_TPK_catalytic,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511	349	0	0	253	54	17.59	-	-	-	T	144320315	C	T	144320315	3	4	748	1	0	0	0	0	1	0	0	0	16500	826	29	2	449	2	TPK1	7	144320315	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	512977	144320315	14818348	137	65684										
GIMAP2	0	genome.wustl.edu	37	chr7	150389612	150389612	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttgtcattattgacacaccaGatatgttttcttggaaggac	8	7	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	150389612	150389612	G	C	SNP	GIMAP2	ENST00000223293	human	ensembl	69_37n	1	known	missense	c.238	p.D80H	0.850	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP2	HGNC	ENSG00000106560	67	0	0	79	19	19.39	-	-	-	C	150389612	G	C	150389612	3	2	748	1	0	0	0	0	1	0	0	0	6432	942	33	2	244	2	GIMAP2	7	150389612	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	6069297	150389612	8749051	138	65685										
AGAP3	0	genome.wustl.edu	37	chr7	150813883	150813883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggctctgtcttccgcagactCgtttgtgaacagccaggagt	12	11	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	7	150813883	150813883	C	T	SNP	AGAP3	ENST00000397238	human	ensembl	69_37n	1	known	missense	c.335	p.S112L	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612	9	0	0	31	12	27.91	-	-	-	T	150813883	C	T	150813883	3	4	748	1	0	0	0	0	1	0	0	0	369	893	31	1	341	1	AGAP3	7	150813883	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	424271	150813883	8324780	139	65686										
KIAA0146	0	genome.wustl.edu	37	chr8	48647973	48647973	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgcattggattggaggaaatCgagcttctgagtgcaggagg	16	5	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	48647973	48647973	C	T	SNP	KIAA0146	ENST00000518074	human	ensembl	69_37n	1	putative	nonsense	c.2530	p.R844*	0.009	NULL	NULL	-	no_errors	KIAA0146	HGNC	ENSG00000164808	80	0	0	197	35	15.02	-	-	-	T	48647973	C	T	48647973	4	4	748	1	0	0	0	0	0	1	0	0	8209	874	31	1	2787	1	KIAA0146	8	48647973	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		48647973	97716049	140	65687										
TOX	0	genome.wustl.edu	37	chr8	59750744	59750744	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttgatggcggcctgagtatCacgaaagaataacgcatagg	12	8	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	59750744	59750744	C	A	SNP	TOX	ENST00000361421	human	ensembl	69_37n	-1	known	missense	c.820	p.D274Y	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX	HGNC	ENSG00000198846	104	0	0	78	43	35.54	-	-	-	A	59750744	C	A	59750744	3	1	748	1	0	0	0	0	1	0	0	0	16473	826	29	2	780	2	TOX	8	59750744	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	11102771	59750744	86613278	141	65688										
PRDM14	0	genome.wustl.edu	37	chr8	70981480	70981480	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gctgggagtgaccccgtacaGaacgaagtgcaggtcctcct	13	12	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	70981480	70981480	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	silent	c.616	p.L206	0.980	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	33	0	0	115	18	13.53	-	-	-	A	70981480	G	A	70981480	2	1	748	1	0	0	0	0	0	0	0	1	12536	933	33	2		2	PRDM14	8	70981480	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11230736	70981480	75382542	142	65689										
CRISPLD1	0	genome.wustl.edu	37	chr8	75898249	75898249	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgtaccgcgcgggagtggctCagagtaaccacagtgctgtt	14	10	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	75898249	75898249	C	T	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	silent	c.27	p.L9	1.000	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	74	0	0	117	18	13.33	-	-	-	T	75898249	C	T	75898249	2	4	748	1	0	0	0	0	0	0	0	1	3912	813	29	2		2	CRISPLD1	8	75898249	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4916769	75898249	70465773	143	65690										
RALYL	0	genome.wustl.edu	37	chr8	85799846	85799846	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcccccccccagaagctcaGaagaagcaattggaagagag	10	13	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	85799846	85799846	G	T	SNP	RALYL	ENST00000521268	human	ensembl	69_37n	1	known	missense	c.693	p.Q231H	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672	104	0	0	134	33	19.76	-	-	-	T	85799846	G	T	85799846	3	4	748	1	0	0	0	0	1	0	0	0	13103	933	33	2	762	2	RALYL	8	85799846	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	9901597	85799846	60564176	144	65691										
CNBD1	0	genome.wustl.edu	37	chr8	88249292	88249292	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttcatttggagtgaagaattCaaaaactctacacttgctga	7	7	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	88249292	88249292	C	G	SNP	CNBD1	ENST00000518476	human	ensembl	69_37n	1	known	missense	c.723	p.F241L	0.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571	155	0	0	108	28	20.59	-	-	-	G	88249292	C	G	88249292	3	3	748	1	0	0	0	0	1	0	0	0	3621	825	29	2	745	2	CNBD1	8	88249292	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2449446	88249292	58114730	145	65692										
DCAF4L2	0	genome.wustl.edu	37	chr8	88886087	88886087	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tacggcaatagttggcgaatCtgaggaaacctagctggttc	12	8	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	88886087	88886087	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.113	p.R38K	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	45	0	0	75	11	12.79	-	-	-	T	88886087	C	T	88886087	3	4	748	1	0	0	0	0	1	0	0	0	4304	913	32	2	1078	2	DCAF4L2	8	88886087	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	636795	88886087	57477935	146	65693										
MMP16	0	genome.wustl.edu	37	chr8	89086949	89086949	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catccatcaccctgttgtttCtcactcgccaaaaccactgg	5	16	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	89086949	89086949	C	G	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.1106	p.R369T	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	107	0	0	133	27	16.88	-	-	-	G	89086949	C	G	89086949	3	3	748	1	0	0	0	0	1	0	0	0	9726	913	32	2	889	2	MMP16	8	89086949	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	200862	89086949	57277073	147	65694										
PKHD1L1	0	genome.wustl.edu	37	chr8	110400725	110400725	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctaataaaaatatttgtacaGagtttacattggaggaatgc	8	4	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	110400725	110400725	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	splice_site	c.570-1	e7-1	1.000	-	-	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	97	0	0	71	11	13.41	-	-	-	A	110400725	G	A	110400725	5	1	748	1	0	0	0	0	0	0	1	0	12046	956	33	2	595	2	PKHD1L1	8	110400725	Splice_Site	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	21313776	110400725	35963297	148	65695										
MTBP	0	genome.wustl.edu	37	chr8	121463465	121463465	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atacagaaaaagataaaattGaagatgttcttcaaacgaat	6	4	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	121463465	121463465	G	A	SNP	MTBP	ENST00000305949	human	ensembl	69_37n	1	known	missense	c.328	p.E110K	1.000	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167	261	0	0	241	40	14.23	-	-	-	A	121463465	G	A	121463465	3	1	748	1	0	0	0	0	1	0	0	0	9984	1291	45	2	342	2	MTBP	8	121463465	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11062740	121463465	24900557	149	65696										
CYP11B1	0	genome.wustl.edu	37	chr8	143957264	143957264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gttggggttccgagccagctCaaagagcgtcatcagcaagg	14	10	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	8	143957264	143957264	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	10	0	0	45	9	16.67	-	-	-	T	143957264	C	T	143957264	3	4	748	1	0	0	0	0	1	0	0	0	4176	835	29	2	542	2	CYP11B1	8	143957264	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	22493799	143957264	2406758	150	65697										
ZBTB5	0	genome.wustl.edu	37	chr9	37441978	37441978	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgcagactgcttgcgcttatGaaggcgtctcatggggaagg	15	8	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	37441978	37441978	G	A	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.571	p.H191Y	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	13	0	0	17	4	19.05	-	-	-	A	37441978	G	A	37441978	3	1	748	1	0	0	0	0	1	0	0	0	17647	1290	45	2	1466	2	ZBTB5	9	37441978	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		37441978	103771453	151	65698										
RASEF	0	genome.wustl.edu	37	chr9	85624562	85624562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgcaaagttcatacctttcaGtattcagactctgatcagca	6	10	5	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	85624562	85624562	G	A	SNP	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	missense	c.953	p.T318I	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	233	0	0	162	32	16.49	-	-	-	A	85624562	G	A	85624562	3	1	748	1	0	0	0	0	1	0	0	0	13151	1029	36	4	1317	4	RASEF	9	85624562	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	48182584	85624562	55588869	152	65699										
FAM120A	0	genome.wustl.edu	37	chr9	96326563	96326563	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agtggccaaagaacttaagtCaaaatctggggaatcgaagt	11	6	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	96326563	96326563	C	G	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	nonsense	c.3182	p.S1061*	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	27	0	0	28	12	29.27	-	-	-	G	96326563	C	G	96326563	4	3	748	1	0	0	0	0	0	1	0	0	5455	838	29	2	3168	2	FAM120A	9	96326563	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10702001	96326563	44886868	153	65700										
DFNB31	0	genome.wustl.edu	37	chr9	117188600	117188600	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gacgtccttcactgtcaggaTgaggtgccgagatgacttaa	12	9	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	117188600	117188600	T	A	SNP	DFNB31	ENST00000362057	human	ensembl	69_37n	-1	known	missense	c.1057	p.I353F	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	17	0	0	48	13	21.31	-	-	-	A	117188600	T	A	117188600	3	1	748	1	0	0	0	0	1	0	0	0	4491	1464	51	5	1702	5	DFNB31	9	117188600	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	20862037	117188600	24024831	154	65701										
RC3H2	0	genome.wustl.edu	37	chr9	125622277	125622277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aatgttttcagaatgcggagGatatactggtactctagtta	10	5	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	125622277	125622277	G	C	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	missense	c.1768	p.P590A	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	154	0	0	121	31	20.39	-	-	-	C	125622277	G	C	125622277	3	2	748	1	0	0	0	0	1	0	0	0	13250	1174	41	2	1929	2	RC3H2	9	125622277	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8433677	125622277	15591154	155	65702										
GTF3C5	0	genome.wustl.edu	37	chr9	135933239	135933239	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccaaggctgatggcggaaaaGagcagctgacgtacgagtct	14	9	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	135933239	135933239	G	C	SNP	GTF3C5	ENST00000372108	human	ensembl	69_37n	1	known	missense	c.1453	p.E485Q	0.998	NULL	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308	14	0	0	24	11	31.43	-	-	-	C	135933239	G	C	135933239	3	2	748	1	0	0	0	0	1	0	0	0	6927	943	33	2	1499	2	GTF3C5	9	135933239	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	10310962	135933239	5280192	156	65703										
NOTCH1	0	genome.wustl.edu	37	chr9	139393424	139393424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catccacattgttcacggcgGcggcccagtgcagggcggac	14	14	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	9	139393424	139393424	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.6107	p.A2036V	0.998	pirsf_Notch,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	28	0	0	113	31	21.53	-	-	-	A	139393424	G	A	139393424	3	1	748	1	0	0	0	0	1	0	0	0	10619	1203	42	4	1568	4	NOTCH1	9	139393424	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3460185	139393424	1820007	157	65704										
CELF2	0	genome.wustl.edu	37	chr10	11299828	11299828	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctccggggacctgatgggctGagtcgaggtgagtgtgctgt	18	8	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	11299828	11299828	G	A	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	silent	c.531	p.L177	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	71	0	0	83	23	21.7	-	-	-	A	11299828	G	A	11299828	2	1	748	1	0	0	0	0	0	0	0	1	3245	1277	45	2		2	CELF2	10	11299828	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		11299828	124234919	158	65705										
CUBN	0	genome.wustl.edu	37	chr10	17087062	17087062	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caagtgaaagtctttgaattCcagttcaaatgcgctgccgt	9	9	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	17087062	17087062	C	G	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.3616	p.E1206Q	0.002	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	148	0	0	141	30	17.54	-	-	-	G	17087062	C	G	17087062	3	3	748	1	0	0	0	0	1	0	0	0	4082	864	30	2	7427	2	CUBN	10	17087062	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5787234	17087062	118447685	159	65706										
PTPLA	0	genome.wustl.edu	37	chr10	17645931	17645931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcatgatggaaaacttacctCaagcaaggcaaatgtctgga	10	8	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	17645931	17645931	C	G	SNP	PTPLA	ENST00000361271	human	ensembl	69_37n	-1	known	missense	c.373	p.E125Q	1.000	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLA	HGNC	ENSG00000165996	110	0	0	66	13	16.46	-	-	-	G	17645931	C	G	17645931	3	3	748	1	0	0	0	0	1	0	0	0	12855	835	29	2	517	2	PTPLA	10	17645931	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	558869	17645931	117888816	160	65707										
ACBD5	0	genome.wustl.edu	37	chr10	27486360	27486360	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaggaaaacaccattttcctCagttcagttttctttaaaaa	5	8	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	27486360	27486360	C	G	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	nonstop	c.1604	p.*535S	1.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	158	0	0	144	28	16.18	-	-	-	G	27486360	C	G	27486360	4	3	748	1	0	0	0	0	0	0	0	0	125	837	29	2	4	2	ACBD5	10	27486360	Nonstop_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9840429	27486360	108048387	161	65708										
WAC	0	genome.wustl.edu	37	chr10	28908478	28908478	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttttcaggatactatttttGagacaacaaattaaggaact	6	5	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	28908478	28908478	G	C	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.1887	p.L629F	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	113	0	0	57	19	25	-	-	-	C	28908478	G	C	28908478	3	2	748	1	0	0	0	0	1	0	0	0	17344	1281	45	2	1941	2	WAC	10	28908478	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1422118	28908478	106626269	162	65709										
FRMPD2	0	genome.wustl.edu	37	chr10	49414927	49414927	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttctggcctcctcttctctGagaatacttggtgaaccagc	8	13	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	49414927	49414927	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.1661	p.S554L	1.000	pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	85	0	0	215	27	11.16	-	-	-	A	49414927	G	A	49414927	3	1	748	1	0	0	0	0	1	0	0	0	6107	1294	45	2	2332	2	FRMPD2	10	49414927	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	20506449	49414927	86119820	163	65710										
ERCC6	0	genome.wustl.edu	37	chr10	50678496	50678496	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttattttccatttgtttattCtcccaaaaagcttctgtttg	4	8	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	50678496	50678496	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	silent	c.3510	p.E1170	0.017	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	155	0	0	151	22	12.72	-	-	-	T	50678496	C	T	50678496	2	4	748	1	0	0	0	0	0	0	0	1	5254	912	32	2		2	ERCC6	10	50678496	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1263569	50678496	84856251	164	65711										
ERCC6	0	genome.wustl.edu	37	chr10	50736490	50736490	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcctccagactggcgtgatCtagttcaattttcacctctg	7	13	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	50736490	50736490	C	G	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.625	p.D209H	0.065	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	183	0	0	404	62	13.3	-	-	-	G	50736490	C	G	50736490	3	3	748	1	0	0	0	0	1	0	0	0	5254	913	32	2	3928	2	ERCC6	10	50736490	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	57994	50736490	84798257	165	65712										
LRRTM3	0	genome.wustl.edu	37	chr10	68687691	68687691	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctaagggagaatacaattatCtgtgccagtcccaaagagct	9	9	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	68687691	68687691	C	A	SNP	LRRTM3	ENST00000361320	human	ensembl	69_37n	1	known	silent	c.1017	p.I339	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	107	0	0	47	28	37.33	-	-	-	A	68687691	C	A	68687691	2	1	748	1	0	0	0	0	0	0	0	1	9107	903	32	2		2	LRRTM3	10	68687691	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	17951201	68687691	66847056	166	65713										
STOX1	0	genome.wustl.edu	37	chr10	70646331	70646331	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acagtcacttggaagggacaGaaaatcacagcatggcagga	12	8	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	70646331	70646331	G	C	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	1	known	missense	c.2779	p.E927Q	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	24	0	0	24	10	29.41	-	-	-	C	70646331	G	C	70646331	3	2	748	1	0	0	0	0	1	0	0	0	15410	943	33	2	2789	2	STOX1	10	70646331	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1958640	70646331	64888416	167	65714										
VCL	0	genome.wustl.edu	37	chr10	75832608	75832608	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gttgctgccagttctcatttCaggtacttcctgcctgtact	8	12	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	75832608	75832608	C	A	SNP	VCL	ENST00000211998	human	ensembl	69_37n	1	known	nonsense	c.620	p.S207*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	99	0	0	69	28	28.87	-	-	-	A	75832608	C	A	75832608	4	1	748	1	0	0	0	0	0	1	0	0	17236	838	29	2	638	2	VCL	10	75832608	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5186277	75832608	59702139	168	65715										
POLR3A	0	genome.wustl.edu	37	chr10	79745020	79745020	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cctgcaaagtggaaagtcttCagggtcatctgggtgcctgg	14	9	4	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	79745020	79745020	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	silent	c.3150	p.L1050	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	30	0	0	341	56	14.11	-	-	-	T	79745020	C	T	79745020	2	4	748	1	0	0	0	0	0	0	0	1	12302	813	29	2		2	POLR3A	10	79745020	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3912412	79745020	55789727	169	65716										
SLC16A12	0	genome.wustl.edu	37	chr10	91198588	91198588	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcttgctgcaaacagcaacaGaggcaagtctgtgcccattc	9	12	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	91198588	91198588	G	C	SNP	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	silent	c.801	p.L267	0.009	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	91	0	0	68	22	24.44	-	-	-	C	91198588	G	C	91198588	2	2	748	1	0	0	0	0	0	0	0	1	14494	929	33	2		2	SLC16A12	10	91198588	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11453568	91198588	44336159	170	65717										
PPRC1	0	genome.wustl.edu	37	chr10	103906618	103906618	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccatggccctagtcgagtccAtgtgggctctggggaccatg	14	12	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	103906618	103906618	A	G	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	1	known	missense	c.3869	p.H1290R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	37	0	0	25	36	59.02	-	-	-	G	103906618	A	G	103906618	3	3	748	1	0	0	0	0	1	0	0	0	12487	217	8	5	3903	5	PPRC1	10	103906618	Missense_Mutation	SNP	A	TCGA-E2-A10C-01A-21D-A10M-09	12708030	103906618	31628129	171	65718										
PAOX	0	genome.wustl.edu	37	chr10	135194991	135194991	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caaggactcacaaactgcatGatggccgccctgccggagga	12	13	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	10	135194991	135194991	G	A	SNP	PAOX	ENST00000278060	human	ensembl	69_37n	1	known	missense	c.696	p.M232I	0.002	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	PAOX	HGNC	ENSG00000148832	25	0	0	34	23	39.66	-	-	-	A	135194991	G	A	135194991	3	1	748	1	0	0	0	0	1	0	0	0	11496	1290	45	2	706	2	PAOX	10	135194991	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	31288373	135194991	339756	172	65719										
RPLP2	0	genome.wustl.edu	37	chr11	812762	812762	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctctcctctgttccacagcaGaggagaagaaagatgagaag	11	9	2	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	812762	812762	G	C	SNP	RPLP2	ENST00000321153	human	ensembl	69_37n	1	known	missense	c.274	p.E92Q	1.000	pfam_Ribosomal_60S	pfam_Ribosomal_60S	-	no_errors	RPLP2	HGNC	ENSG00000177600	154	0	0	142	55	27.78	-	-	-	C	812762	G	C	812762	3	2	748	1	0	0	0	0	1	0	0	0	13692	943	33	2	288	2	RPLP2	11	812762	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		812762	134193754	173	65720										
TSSC4	0	genome.wustl.edu	37	chr11	2424787	2424787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gttggcttccatggcagcagGaagcggagtcgagaccactt	14	10	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	2424787	2424787	G	C	SNP	TSSC4	ENST00000333256	human	ensembl	69_37n	1	known	missense	c.924	p.R308S	1.000	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281	13	0	0	32	12	27.27	-	-	-	C	2424787	G	C	2424787	3	2	748	1	0	0	0	0	1	0	0	0	16763	1165	41	2	926	2	TSSC4	11	2424787	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1612025	2424787	132581729	174	65721										
OR51A7	0	genome.wustl.edu	37	chr11	4929293	4929293	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcagcattgcatctttggcaGagaggcttaaggccctaaat	10	9	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	4929293	4929293	G	C	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	1	known	missense	c.694	p.E232Q	0.053	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	135	0	0	98	46	31.94	-	-	-	C	4929293	G	C	4929293	3	2	748	1	0	0	0	0	1	0	0	0	11161	943	33	2	696	2	OR51A7	11	4929293	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2504506	4929293	130077223	175	65722										
OR6A2	0	genome.wustl.edu	37	chr11	6816236	6816236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccttatagcgtccagcagccGaaggaatgtgcatcacagca	10	12	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	6816236	6816236	G	T	SNP	OR6A2	ENST00000332601	human	ensembl	69_37n	-1	known	nonsense	c.704	p.S235*	0.125	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	37	0	0	34	11	24.44	-	-	-	T	6816236	G	T	6816236	4	4	748	1	0	0	0	0	0	1	0	0	11259	1059	37	3	283	3	OR6A2	11	6816236	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1886943	6816236	128190280	176	65723										
NLRP14	0	genome.wustl.edu	37	chr11	7067969	7067969	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atacaaatgaacacttgagaGaattggacctgtaccatagc	8	8	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	7067969	7067969	G	C	SNP	NLRP14	ENST00000299481	human	ensembl	69_37n	1	known	missense	c.2029	p.E677Q	0.998	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	131	0	0	87	26	23.01	-	-	-	C	7067969	G	C	7067969	3	2	748	1	0	0	0	0	1	0	0	0	10548	943	33	2	2043	2	NLRP14	11	7067969	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	251733	7067969	127938547	177	65724										
RAG1	0	genome.wustl.edu	37	chr11	36597333	36597333	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agaatcccaatgcttccaaaGaggaaaggaaaaggtggcag	12	7	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	36597333	36597333	G	C	SNP	RAG1	ENST00000299440	human	ensembl	69_37n	1	known	missense	c.2479	p.E827Q	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	30	0	0	25	10	28.57	-	-	-	C	36597333	G	C	36597333	3	2	748	1	0	0	0	0	1	0	0	0	13086	943	33	2	2481	2	RAG1	11	36597333	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	29529364	36597333	98409183	178	65725										
RNF169	0	genome.wustl.edu	37	chr11	74500681	74500681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttctttcagactttatattCagagcaccaatcaaattaag	4	8	4	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	74500681	74500681	C	G	SNP	RNF169	ENST00000299563	human	ensembl	69_37n	1	known	missense	c.513	p.F171L	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	236	0	0	107	12	10.08	-	-	-	G	74500681	C	G	74500681	3	3	748	1	0	0	0	0	1	0	0	0	13546	825	29	2	519	2	RNF169	11	74500681	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	37903348	74500681	60505835	179	65726										
C11orf30	0	genome.wustl.edu	37	chr11	76175093	76175093	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aataaccttcactaaaccatCaacacagacaacaaacacaa	1	13	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	76175093	76175093	C	G	SNP	C11orf30	ENST00000334736	human	ensembl	69_37n	1	known	nonsense	c.800	p.S267*	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636	69	0	0	74	27	26.73	-	-	-	G	76175093	C	G	76175093	4	3	748	1	0	0	0	0	0	1	0	0	1647	838	29	2	822	2	C11orf30	11	76175093	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1674412	76175093	58831423	180	65727										
FOLR4	0	genome.wustl.edu	37	chr11	94038866	94038866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgcccacctgggctggggacGagctgctcaacatctgcatg	13	13	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	94038866	94038866	G	A	SNP	FOLR4	ENST00000440961	human	ensembl	69_37n	1	novel	missense	c.64	p.E22K	0.037	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560	9	0	0	30	7	18.92	-	-	-	A	94038866	G	A	94038866	3	1	748	1	0	0	0	0	1	0	0	0	6030	1059	37	1	66	1	FOLR4	11	94038866	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	17863773	94038866	40967650	181	65728										
NPAT	0	genome.wustl.edu	37	chr11	108057261	108057261	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aattccgtattgttgaatgaGggccagacaaagtggtactt	11	6	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	108057261	108057261	G	C	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	missense	c.674	p.P225R	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	302	0	0	144	80	35.56	-	-	-	C	108057261	G	C	108057261	3	2	748	1	0	0	0	0	1	0	0	0	10638	1000	35	4	3653	4	NPAT	11	108057261	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	14018395	108057261	26949255	182	65729										
ATM	0	genome.wustl.edu	37	chr11	108170512	108170512	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tagctatacaacatagtaaaGatgcatcttataccaaggcc	6	9	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	108170512	108170512	G	A	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.5077	p.D1693N	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	232	0	0	90	69	43.12	-	-	-	A	108170512	G	A	108170512	3	1	748	1	0	0	0	0	1	0	0	0	1113	942	33	2	5207	2	ATM	11	108170512	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	113251	108170512	26836004	183	65730										
HYOU1	0	genome.wustl.edu	37	chr11	118926849	118926849	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagactcgcctcctcggcctCtgcctcctaactttgtctgc	7	18	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	118926849	118926849	C	T	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	silent	c.24	p.Q8	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	44	0	0	86	16	15.69	-	-	-	T	118926849	C	T	118926849	2	4	748	1	0	0	0	0	0	0	0	1	7524	912	32	2		2	HYOU1	11	118926849	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10756337	118926849	16079667	184	65731										
TBRG1	0	genome.wustl.edu	37	chr11	124495579	124495579	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gatctcaggtacttgctaaaGaagctcctccagcttcaggc	9	12	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	124495579	124495579	G	A	SNP	TBRG1	ENST00000441174	human	ensembl	69_37n	1	known	silent	c.234	p.K78	1.000	NULL	pfam_FYrich_N,pfam_FYrich_C,smart_FYrich_N,smart_FYrich_C	-	no_errors	TBRG1	HGNC	ENSG00000154144	40	0	0	30	11	26.83	-	-	-	A	124495579	G	A	124495579	2	1	748	1	0	0	0	0	0	0	0	1	15743	933	33	2		2	TBRG1	11	124495579	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	5568730	124495579	10510937	185	65732										
FLI1	0	genome.wustl.edu	37	chr11	128651915	128651915	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cctcacgattgagtgtcaaaGaaggtaagtttgttcttttg	10	6	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	128651915	128651915	G	C	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	missense	c.652	p.E218Q	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	139	0	0	160	36	18.37	-	-	-	C	128651915	G	C	128651915	3	2	748	1	0	0	0	0	1	0	0	0	5970	943	33	2	670	2	FLI1	11	128651915	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4156336	128651915	6354601	186	65733										
NCAPD3	0	genome.wustl.edu	37	chr11	134047318	134047318	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	accagggctgggatgctcttCtttgccagatcctcgtgctg	12	12	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	11	134047318	134047318	C	T	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	silent	c.2817	p.K939	1.000	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	26	0	0	56	15	21.13	-	-	-	T	134047318	C	T	134047318	2	4	748	1	0	0	0	0	0	0	0	1	10278	912	32	2		2	NCAPD3	11	134047318	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5395403	134047318	959198	187	65734										
FOXJ2	0	genome.wustl.edu	37	chr12	8200740	8200740	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcggaaggctatgggcctccCcctgtaatggccatgcatcc	12	14	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	8200740	8200740	C	T	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	silent	c.1080	p.P360	0.761	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	9	0	0	43	10	18.52	-	-	-	T	8200740	C	T	8200740	2	4	748	1	0	0	0	0	0	0	0	1	6060	610	22	4		4	FOXJ2	12	8200740	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		8200740	125651155	188	65735										
PLEKHA5	0	genome.wustl.edu	37	chr12	19467754	19467754	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgatttgaaatagatgaaaGaaaatgaacctattatcacc	6	6	1	6			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	19467754	19467754	G	C	SNP	PLEKHA5	ENST00000424268	human	ensembl	69_37n	1	known	missense	c.1528	p.E510Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	77	0	0	107	16	13.01	-	-	-	C	19467754	G	C	19467754	3	2	748	1	0	0	0	0	1	0	0	0	12133	943	33	2	1902	2	PLEKHA5	12	19467754	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11267014	19467754	114384141	189	65736										
ITPR2	0	genome.wustl.edu	37	chr12	26748416	26748416	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acccttgccatatccaccaaGaagttctcaaataatttcca	3	13	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	26748416	26748416	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.4362	p.F1454	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	248	0	0	179	35	16.36	-	-	-	A	26748416	G	A	26748416	2	1	748	1	0	0	0	0	0	0	0	1	7975	933	33	2		2	ITPR2	12	26748416	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7280662	26748416	107103479	190	65737										
IPO8	0	genome.wustl.edu	37	chr12	30834604	30834604	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccaacttactcatatgtcttCaccagttgatacaggcataa	5	11	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	30834604	30834604	C	A	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	silent	c.471	p.V157	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	73	0	0	118	21	15	-	-	-	A	30834604	C	A	30834604	2	1	748	1	0	0	0	0	0	0	0	1	7852	813	29	2		2	IPO8	12	30834604	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4086188	30834604	103017291	191	65738										
SLC2A13	0	genome.wustl.edu	37	chr12	40265720	40265720	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagccatattgcaagtctatCatcttcaacaccagacatct	4	13	5	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	40265720	40265720	C	T	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	missense	c.1078	p.D360N	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	65	0	0	63	14	18.18	-	-	-	T	40265720	C	T	40265720	3	4	748	1	0	0	0	0	1	0	0	0	14631	826	29	2	892	2	SLC2A13	12	40265720	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	9431116	40265720	93586175	192	65739										
DIP2B	0	genome.wustl.edu	37	chr12	51076995	51076995	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggatgcctcctggcagaagtGattccagtgcctatagaggt	13	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	51076995	51076995	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	silent	c.1281	p.V427	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	223	0	0	226	45	16.54	-	-	-	A	51076995	G	A	51076995	2	1	748	1	0	0	0	0	0	0	0	1	4564	1277	45	2		2	DIP2B	12	51076995	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	10811275	51076995	82774900	193	65740										
SCN8A	0	genome.wustl.edu	37	chr12	52078046	52078046	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagtccttttaacctgataaGaagaatagctattaaaattt	5	5	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	52078046	52078046	G	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	missense	c.365	p.R122T	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	122	0	0	93	30	24.39	-	-	-	C	52078046	G	C	52078046	3	2	748	1	0	0	0	0	1	0	0	0	14012	942	33	2	371	2	SCN8A	12	52078046	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1001051	52078046	81773849	194	65741										
OR6C2	0	genome.wustl.edu	37	chr12	55846936	55846936	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcatttctctcaaagaagtaGaagctgtgatgaattggcat	10	6	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	55846936	55846936	G	C	SNP	OR6C2	ENST00000322678	human	ensembl	69_37n	1	known	nonstop	c.939	p.*313Y	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	86	0	0	56	8	12.5	-	-	-	C	55846936	G	C	55846936	4	2	748	1	0	0	0	0	0	0	0	0	11264	956	33	2	941	2	OR6C2	12	55846936	Nonstop_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3768890	55846936	78004959	195	65742										
SUOX	0	genome.wustl.edu	37	chr12	56397621	56397621	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acaaccagtcccatgtgcgtGagttactggctcagtacaag	10	11	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	56397621	56397621	G	A	SNP	SUOX	ENST00000266971	human	ensembl	69_37n	1	known	missense	c.448	p.E150K	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Cyt_B5	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5	-	no_errors	SUOX	HGNC	ENSG00000139531	57	0	0	92	17	15.6	-	-	-	A	56397621	G	A	56397621	3	1	748	1	0	0	0	0	1	0	0	0	15486	1291	45	2	458	2	SUOX	12	56397621	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	550685	56397621	77454274	196	65743										
NACA	0	genome.wustl.edu	37	chr12	57112229	57112229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gggtgtggatgcccctttggGgaatggggtagctgctggac	19	7	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	57112229	57112229	G	T	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.3085	p.P1029T	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	9	0	0	15	5	25	-	-	-	T	57112229	G	T	57112229	3	4	748	1	0	0	0	0	1	0	0	0	10205	1232	43	4	3179	4	NACA	12	57112229	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	714608	57112229	76739666	197	65744										
FGD6	0	genome.wustl.edu	37	chr12	95498801	95498801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acctggctgagagaatgaagGaacgttctacactttcaatc	9	9	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	95498801	95498801	G	A	SNP	FGD6	ENST00000343958	human	ensembl	69_37n	-1	known	missense	c.3479	p.S1160F	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263	193	0	0	84	17	16.83	-	-	-	A	95498801	G	A	95498801	3	1	748	1	0	0	0	0	1	0	0	0	5883	1174	41	2	845	2	FGD6	12	95498801	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	38386572	95498801	38353094	198	65745										
DDX55	0	genome.wustl.edu	37	chr12	124101077	124101077	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtgggattttagtgtgcactGatgtgatggcccggggaatt	16	5	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	124101077	124101077	G	A	SNP	DDX55	ENST00000238146	human	ensembl	69_37n	1	known	missense	c.976	p.D326N	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364	147	0	0	170	49	22.27	-	-	-	A	124101077	G	A	124101077	3	1	748	1	0	0	0	0	1	0	0	0	4404	1290	45	2	1014	2	DDX55	12	124101077	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	28602276	124101077	9750818	199	65746										
GALNT9	0	genome.wustl.edu	37	chr12	132862887	132862887	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cgagggagatgcggtcgctgAgctgagcgttgtagccgtac	17	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	12	132862887	132862887	A	G	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	missense	c.368	p.L123P	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	8	0	0	31	6	16.22	-	-	-	G	132862887	A	G	132862887	3	3	748	1	0	0	0	0	1	0	0	0	6270	304	11	5	1483	5	GALNT9	12	132862887	Missense_Mutation	SNP	A	TCGA-E2-A10C-01A-21D-A10M-09	8761810	132862887	989008	200	65747										
TUBA3C	0	genome.wustl.edu	37	chr13	19751442	19751442	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atctgcccaatcaggcgattGaggttggtgtacgtgggacg	15	8	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	19751442	19751442	G	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	silent	c.681	p.L227	0.996	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	125	0	0	152	64	29.63	-	-	-	T	19751442	G	T	19751442	2	4	748	1	0	0	0	0	0	0	0	1	16843	1277	45	2		2	TUBA3C	13	19751442	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		19751442	95418436	201	65748										
TUBA3C	0	genome.wustl.edu	37	chr13	19751650	19751650	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acttcttgccgtaatccactGagagccgctccatgagcaga	9	13	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	19751650	19751650	G	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	nonsense	c.473	p.S158*	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	85	0	0	95	33	25.78	-	-	-	T	19751650	G	T	19751650	4	4	748	1	0	0	0	0	0	1	0	0	16843	1294	45	2	887	2	TUBA3C	13	19751650	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	208	19751650	95418228	202	65749										
CENPJ	0	genome.wustl.edu	37	chr13	25480951	25480951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cattttaaacagcggctggtCctcggaagtgctctggttag	12	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	25480951	25480951	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	missense	c.1225	p.D409N	0.984	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	180	1	0.55	96	47	32.87	-	-	-	T	25480951	C	T	25480951	3	4	748	1	0	0	0	0	1	0	0	0	3263	855	30	2	2835	2	CENPJ	13	25480951	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5729301	25480951	89688927	203	65750										
TRIM13	0	genome.wustl.edu	37	chr13	50587226	50587226	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgggtttttcattttcaatGaaagattcaagaattttact	6	4	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	50587226	50587226	G	A	SNP	TRIM13	ENST00000298772	human	ensembl	69_37n	1	known	missense	c.1159	p.E387K	0.996	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977	203	0	0	75	21	21.88	-	-	-	A	50587226	G	A	50587226	3	1	748	1	0	0	0	0	1	0	0	0	16584	1291	45	2	1165	2	TRIM13	13	50587226	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	25106275	50587226	64582652	204	65751										
PCCA	0	genome.wustl.edu	37	chr13	100915005	100915005	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atggttttagattgtcatctCaagaagctgcttctagtttt	8	6	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	100915005	100915005	C	G	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	1	known	missense	c.739	p.Q247E	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	157	0	0	46	13	22.03	-	-	-	G	100915005	C	G	100915005	3	3	748	1	0	0	0	0	1	0	0	0	11577	827	29	2	777	2	PCCA	13	100915005	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	50327779	100915005	14254873	205	65752										
ATP4B	0	genome.wustl.edu	37	chr13	114303695	114303695	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgcgcaaaccgtttcacttCtcaatcttgagtttgaactc	6	12	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	13	114303695	114303695	C	T	SNP	ATP4B	ENST00000335288	human	ensembl	69_37n	-1	known	silent	c.870	p.E290	0.002	tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP4B	HGNC	ENSG00000186009	72	0	0	82	23	21.9	-	-	-	T	114303695	C	T	114303695	2	4	748	1	0	0	0	0	0	0	0	1	1150	912	32	2		2	ATP4B	13	114303695	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	13388690	114303695	866183	206	65753										
OR4K15	0	genome.wustl.edu	37	chr14	20444652	20444652	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaggcagctatgtcaaaactGaagagtcggtatctgaagcc	11	8	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	20444652	20444652	G	C	SNP	OR4K15	ENST00000305051	human	ensembl	69_37n	1	known	silent	c.975	p.L325	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488	141	0	0	105	22	17.32	-	-	-	C	20444652	G	C	20444652	2	2	748	1	0	0	0	0	0	0	0	1	11143	1277	45	2		2	OR4K15	14	20444652	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		20444652	86904888	207	65754										
ABHD4	0	genome.wustl.edu	37	chr14	23072319	23072319	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccagaataagttcctggccaGatatgtatccctcccaaacc	6	14	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	23072319	23072319	G	A	SNP	ABHD4	ENST00000428304	human	ensembl	69_37n	1	known	missense	c.137	p.R46K	0.954	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD4	HGNC	ENSG00000100439	34	0	0	59	11	15.71	-	-	-	A	23072319	G	A	23072319	3	1	748	1	0	0	0	0	1	0	0	0	84	942	33	2	147	2	ABHD4	14	23072319	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2627667	23072319	84277221	208	65755										
PSMC6	0	genome.wustl.edu	37	chr14	53173920	53173920	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccattcccggcatcccctatGagagacggcttctcatcatg	8	15	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	53173920	53173920	G	A	SNP	PSMC6	ENST00000445930	human	ensembl	69_37n	1	known	missense	c.25	p.E9K	1.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519	12	0	0	33	8	19.51	-	-	-	A	53173920	G	A	53173920	3	1	748	1	0	0	0	0	1	0	0	0	12771	1291	45	2	27	2	PSMC6	14	53173920	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	30101601	53173920	54175620	209	65756										
PELI2	0	genome.wustl.edu	37	chr14	56757079	56757079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atccacgagggggcttcaccGaggagtcccagcccggggtc	15	14	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	56757079	56757079	G	A	SNP	PELI2	ENST00000267460	human	ensembl	69_37n	1	known	missense	c.601	p.E201K	0.978	pfam_Pellino	pfam_Pellino	-	no_errors	PELI2	HGNC	ENSG00000139946	33	0	0	68	11	13.92	-	-	-	A	56757079	G	A	56757079	3	1	748	1	0	0	0	0	1	0	0	0	11795	1059	37	1	619	1	PELI2	14	56757079	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3583159	56757079	50592461	210	65757										
HIF1A	0	genome.wustl.edu	37	chr14	62193473	62193473	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acacagcgaagcttttttctCagaatgaagtgtaccctaac	7	10	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	62193473	62193473	C	G	SNP	HIF1A	ENST00000539097	human	ensembl	69_37n	1	known	silent	c.579	p.L193	0.997	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_HIF-1_alpha,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644	192	0	0	189	47	19.83	-	-	-	G	62193473	C	G	62193473	2	3	748	1	0	0	0	0	0	0	0	1	7154	813	29	2		2	HIF1A	14	62193473	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5436394	62193473	45156067	211	65758										
SYNE2	0	genome.wustl.edu	37	chr14	64669652	64669652	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atgatgtctgcgatgatcaaGagatccagaagaggctcgct	12	8	2	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	64669652	64669652	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	1	known	missense	c.18172	p.E6058K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	81	0	0	110	24	17.91	-	-	-	A	64669652	G	A	64669652	3	1	748	1	0	0	0	0	1	0	0	0	15538	943	33	2	18566	2	SYNE2	14	64669652	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2476179	64669652	42679888	212	65759										
C14orf118	0	genome.wustl.edu	37	chr14	76621084	76621084	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aatgcaccttgtcgaccactCaggcgcaggcggaaggtgaa	13	11	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	76621084	76621084	C	G	SNP	C14orf118	ENST00000261530	human	ensembl	69_37n	1	known	silent	c.378	p.L126	0.945	NULL	NULL	-	no_errors	C14orf118	HGNC	ENSG00000089916	31	0	0	64	12	15.58	-	-	-	G	76621084	C	G	76621084	2	3	748	1	0	0	0	0	0	0	0	1	1753	813	29	2		2	C14orf118	14	76621084	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	11951432	76621084	30728456	213	65760										
ISM2	0	genome.wustl.edu	37	chr14	77942061	77942061	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctccagtcccccttgcacagGatccagggcgtcgtgtcgaa	11	15	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	77942061	77942061	G	A	SNP	ISM2	ENST00000342219	human	ensembl	69_37n	-1	known	silent	c.1593	p.I531	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593	11	0	0	53	10	15.62	-	-	-	A	77942061	G	A	77942061	2	1	748	1	0	0	0	0	0	0	0	1	7915	1164	41	2		2	ISM2	14	77942061	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1320977	77942061	29407479	214	65761										
RTL1	0	genome.wustl.edu	37	chr14	101349406	101349406	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcttggctggtcggaagtctCatcatctgcttccttcgggt	12	11	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	101349406	101349406	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.1720	p.E574K	0.970	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	23	0	0	60	24	28.57	-	-	-	T	101349406	C	T	101349406	3	4	748	1	0	0	0	0	1	0	0	0	13810	835	29	2	2360	2	RTL1	14	101349406	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	23407345	101349406	6000134	215	65762										
AHNAK2	0	genome.wustl.edu	37	chr14	105410836	105410836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccatggacttccctggggccGataccctgaatgacggcatc	11	14	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	105410836	105410836	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.10952	p.S3651L	0.099	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	127	0	0	156	32	17.02	-	-	-	A	105410836	G	A	105410836	3	1	748	1	0	0	0	0	1	0	0	0	415	1059	37	1	6439	1	AHNAK2	14	105410836	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4061430	105410836	1938704	216	65763										
AHNAK2	0	genome.wustl.edu	37	chr14	105418953	105418953	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acttccgccttggggcctttCaggtccagcttggggccctt	12	14	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	14	105418953	105418953	C	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.2835	p.L945	0.010	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	119	0	0	157	43	21.5	-	-	-	G	105418953	C	G	105418953	2	3	748	1	0	0	0	0	0	0	0	1	415	813	29	2		2	AHNAK2	14	105418953	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	8117	105418953	1930587	217	65764										
ATP10A	0	genome.wustl.edu	37	chr15	25924558	25924558	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttgaagtcctgatcggcctGagtggggctggacaggaagt	16	8	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	25924558	25924558	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.4430	p.S1477L	0.043	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	24	0	0	41	10	19.61	-	-	-	A	25924558	G	A	25924558	3	1	748	1	0	0	0	0	1	0	0	0	1120	1294	45	2	73	2	ATP10A	15	25924558	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		25924558	76606834	218	65765										
RYR3	0	genome.wustl.edu	37	chr15	33765740	33765740	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aacccacttcagaagccaagGtgagattggctgtccgccct	10	13	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	33765740	33765740	G	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	splice_site	c.171+1	e2+1	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838	21	0	0	28	27	49.09	-	-	-	T	33765740	G	T	33765740	5	4	748	1	0	0	0	0	0	0	1	0	13856	1275	44	4	178	4	RYR3	15	33765740	Splice_Site	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7841182	33765740	68765652	219	65766										
ZFYVE19	0	genome.wustl.edu	37	chr15	41099931	41099931	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gggcagggaagggaagggcgGagctggggtgagggtccaag	24	5	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	41099931	41099931	G	C	SNP	ZFYVE19	ENST00000568062	human	ensembl	69_37n	1	known	missense	c.92	p.G31A	0.096	NULL	superfamily_Znf_FYVE_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE19	HGNC	ENSG00000166140	12	0	0	38	11	22	-	-	-	C	41099931	G	C	41099931	3	2	748	1	0	0	0	0	1	0	0	0	17761	1161	41	2	146	2	ZFYVE19	15	41099931	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7334191	41099931	61431461	220	65767										
TP53BP1	0	genome.wustl.edu	37	chr15	43700247	43700247	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgctgttggtctgataccaaGagtaccttcagattctggaa	10	8	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	43700247	43700247	G	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	silent	c.5640	p.L1880	0.931	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	32	0	0	35	9	20.45	-	-	-	C	43700247	G	C	43700247	2	2	748	1	0	0	0	0	0	0	0	1	16479	929	33	2		2	TP53BP1	15	43700247	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2600316	43700247	58831145	221	65768										
SPG11	0	genome.wustl.edu	37	chr15	44900705	44900705	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggaggagtgcactgtgggaaGagagcagtttttagcttggg	18	4	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	44900705	44900705	G	A	SNP	SPG11	ENST00000559754	human	ensembl	69_37n	-1	putative	missense	c.119	p.S40F	0.970	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPG11	HGNC	ENSG00000104133	191	0	0	143	35	19.66	-	-	-	A	44900705	G	A	44900705	3	1	748	1	0	0	0	0	1	0	0	0	15132	929	33	2	4029	2	SPG11	15	44900705	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1200458	44900705	57630687	222	65769										
B2M	0	genome.wustl.edu	37	chr15	45003787	45003787	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgtgctcgcgctactctctCtttctggcctggaggctatc	10	14	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	45003787	45003787	C	T	SNP	B2M	ENST00000544417	human	ensembl	69_37n	1	known	missense	c.43	p.L15F	0.001	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	B2M	HGNC	ENSG00000166710	21	0	0	43	17	28.33	-	-	-	T	45003787	C	T	45003787	3	4	748	1	0	0	0	0	1	0	0	0	1248	913	32	2	45	2	B2M	15	45003787	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	103082	45003787	57527605	223	65770										
SLC28A2	0	genome.wustl.edu	37	chr15	45564978	45564978	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgtgctgcagagggctctttCagaggtgagcaccaggaccc	14	11	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	45564978	45564978	C	T	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	1	known	nonsense	c.1855	p.Q619*	1.000	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	42	0	0	25	5	16.67	-	-	-	T	45564978	C	T	45564978	4	4	748	1	0	0	0	0	0	1	0	0	14621	827	29	2	1917	2	SLC28A2	15	45564978	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	561191	45564978	56966414	224	65771										
BNC1	0	genome.wustl.edu	37	chr15	83933455	83933455	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cttctttctcttgaattgccAtgagttcaactatagatttg	6	8	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	83933455	83933455	A	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.548	p.M183K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	90	0	0	65	43	39.81	-	-	-	T	83933455	A	T	83933455	3	4	748	1	0	0	0	0	1	0	0	0	1479	217	8	5	2444	5	BNC1	15	83933455	Missense_Mutation	SNP	A	TCGA-E2-A10C-01A-21D-A10M-09	38368477	83933455	18597937	225	65772										
RLBP1	0	genome.wustl.edu	37	chr15	89762200	89762200	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggacagggtacttaccccttCtgacatgttgcctatggaag	11	10	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	89762200	89762200	C	T	SNP	RLBP1	ENST00000268125	human	ensembl	69_37n	-1	known	missense	c.7	p.E3K	0.999	NULL	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	RLBP1	HGNC	ENSG00000140522	87	0	0	157	29	15.51	-	-	-	T	89762200	C	T	89762200	3	4	748	1	0	0	0	0	1	0	0	0	13474	922	32	2	974	2	RLBP1	15	89762200	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5828745	89762200	12769192	226	65773										
BLM	0	genome.wustl.edu	37	chr15	91312739	91312739	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagtttccttctgttccggtGatggctcttacggccacagc	10	12	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	91312739	91312739	G	A	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	silent	c.2478	p.V826	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	51	0	0	41	14	25.45	-	-	-	A	91312739	G	A	91312739	2	1	748	1	0	0	0	0	0	0	0	1	1450	1277	45	2		2	BLM	15	91312739	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1550539	91312739	11218653	227	65774										
BLM	0	genome.wustl.edu	37	chr15	91354615	91354615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	taagaggagaaaaactgcttCcagtggttccaaggcaaagg	12	7	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	91354615	91354615	C	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	missense	c.4055	p.S1352F	0.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/RNaseD_C,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_Helicase/RNaseD_C,pfscan_Helicase/RNaseD_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299	89	0	0	105	30	22.06	-	-	-	T	91354615	C	T	91354615	3	4	748	1	0	0	0	0	1	0	0	0	1450	855	30	2	4133	2	BLM	15	91354615	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	41876	91354615	11176777	228	65775										
TTC23	0	genome.wustl.edu	37	chr15	99715275	99715275	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catggtgctcgtgtctccctGaagcgacagcagcatgggcg	14	12	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	15	99715275	99715275	G	A	SNP	TTC23	ENST00000262074	human	ensembl	69_37n	-1	known	missense	c.845	p.S282L	0.536	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852	19	0	0	37	13	26	-	-	-	A	99715275	G	A	99715275	3	1	748	1	0	0	0	0	1	0	0	0	16787	1294	45	2	518	2	TTC23	15	99715275	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8360660	99715275	2816117	229	65776										
ABCA3	0	genome.wustl.edu	37	chr16	2336827	2336827	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cggccagggcagtggctggaGagtggtacgcctggttgttg	19	8	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	2336827	2336827	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	missense	c.3146	p.S1049F	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	9	0	0	83	44	34.65	-	-	-	A	2336827	G	A	2336827	3	1	748	1	0	0	0	0	1	0	0	0	33	942	33	2	2016	2	ABCA3	16	2336827	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		2336827	88017926	230	65777										
DEXI	0	genome.wustl.edu	37	chr16	11035707	11035707	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aggaagacgaggcccacgttGaggacgatgtactccatgag	14	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	11035707	11035707	G	A	SNP	DEXI	ENST00000331808	human	ensembl	69_37n	-1	known	silent	c.156	p.L52	0.997	prints_Dexamethasone-induced	prints_Dexamethasone-induced	-	no_errors	DEXI	HGNC	ENSG00000182108	16	0	0	97	17	14.91	-	-	-	A	11035707	G	A	11035707	2	1	748	1	0	0	0	0	0	0	0	1	4487	1277	45	2		2	DEXI	16	11035707	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8698880	11035707	79319046	231	65778										
TMC5	0	genome.wustl.edu	37	chr16	19468194	19468194	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acattgatgtgatagactctCagacagtcagcaaaaggaat	9	7	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	19468194	19468194	C	G	SNP	TMC5	ENST00000219821	human	ensembl	69_37n	1	known	missense	c.166	p.Q56E	0.011	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	87	0	0	146	82	35.65	-	-	-	G	19468194	C	G	19468194	3	3	748	1	0	0	0	0	1	0	0	0	16083	827	29	2	1228	2	TMC5	16	19468194	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	8432487	19468194	70886559	232	65779										
TMC5	0	genome.wustl.edu	37	chr16	19468321	19468321	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	catagacactcctggttcttCacatgaaactgttcaaggta	7	10	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	19468321	19468321	C	T	SNP	TMC5	ENST00000219821	human	ensembl	69_37n	1	known	missense	c.293	p.S98L	0.085	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	70	0	0	118	50	29.76	-	-	-	T	19468321	C	T	19468321	3	4	748	1	0	0	0	0	1	0	0	0	16083	838	29	2	1355	2	TMC5	16	19468321	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	127	19468321	70886432	233	65780										
ZP2	0	genome.wustl.edu	37	chr16	21213434	21213434	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccagtactaaccttatatctCgttccacatccattcagggg	6	13	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	21213434	21213434	C	T	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	silent	c.1278	p.T426	0.360	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	64	0	0	78	59	43.07	-	-	-	T	21213434	C	T	21213434	2	4	748	1	0	0	0	0	0	0	0	1	18309	871	31	1		1	ZP2	16	21213434	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1745113	21213434	69141319	234	65781										
C16orf58	0	genome.wustl.edu	37	chr16	31503569	31503569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctctgctggaaggggtccatCtccctgcagggccccaagca	12	15	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	31503569	31503569	C	T	SNP	C16orf58	ENST00000327237	human	ensembl	69_37n	-1	known	missense	c.1180	p.D394N	0.749	NULL	pfam_DUF647	-	no_errors	C16orf58	HGNC	ENSG00000140688	10	0	0	43	11	20.37	-	-	-	T	31503569	C	T	31503569	3	4	748	1	0	0	0	0	1	0	0	0	1835	913	32	2	238	2	C16orf58	16	31503569	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10290135	31503569	58851184	235	65782										
ZNF267	0	genome.wustl.edu	37	chr16	31926785	31926785	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cagagaattcacactggagaGaaaccatacaaatgtaaaga	8	7	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	31926785	31926785	G	C	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	missense	c.1215	p.E405D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	75	0	0	83	46	35.66	-	-	-	C	31926785	G	C	31926785	3	2	748	1	0	0	0	0	1	0	0	0	17902	933	33	2	1229	2	ZNF267	16	31926785	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	423216	31926785	58427968	236	65783										
ZNF267	0	genome.wustl.edu	37	chr16	31926979	31926979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttacaaatgtaaagtatgtaGcaaatcttatgctcgttctt	6	6	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	31926979	31926979	G	A	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	missense	c.1409	p.S470N	0.956	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	122	0	0	79	44	35.48	-	-	-	A	31926979	G	A	31926979	3	1	748	1	0	0	0	0	1	0	0	0	17902	971	34	4	1423	4	ZNF267	16	31926979	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	194	31926979	58427774	237	65784										
BBS2	0	genome.wustl.edu	37	chr16	56543943	56543943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaaatcctcagatccaacaaGaagctgaaggggaaatatca	8	8	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	56543943	56543943	G	C	SNP	BBS2	ENST00000245157	human	ensembl	69_37n	-1	known	missense	c.538	p.L180V	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124	183	0	0	107	31	22.46	-	-	-	C	56543943	G	C	56543943	3	2	748	1	0	0	0	0	1	0	0	0	1342	942	33	2	1679	2	BBS2	16	56543943	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	24616964	56543943	33810810	238	65785										
NUP93	0	genome.wustl.edu	37	chr16	56782199	56782199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtgagctccttcagcaagctGaacagcttgctgctgagact	11	11	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	56782199	56782199	G	A	SNP	NUP93	ENST00000308159	human	ensembl	69_37n	1	known	missense	c.40	p.E14K	1.000	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900	25	0	0	21	11	34.38	-	-	-	A	56782199	G	A	56782199	3	1	748	1	0	0	0	0	1	0	0	0	10845	1291	45	2	42	2	NUP93	16	56782199	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	238256	56782199	33572554	239	65786										
NLRC5	0	genome.wustl.edu	37	chr16	57070087	57070087	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcccagctgcacatcgccagGaagctggagtgagttgtcca	12	12	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	57070087	57070087	G	T	SNP	NLRC5	ENST00000545081	human	ensembl	69_37n	1	known	nonsense	c.1885	p.E629*	0.952	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	9	0	0	17	13	43.33	-	-	-	T	57070087	G	T	57070087	4	4	748	1	0	0	0	0	0	1	0	0	10542	1165	41	2	2749	2	NLRC5	16	57070087	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	287888	57070087	33284666	240	65787										
CNGB1	0	genome.wustl.edu	37	chr16	57994422	57994422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acctgtagcaactgcaggctCatctctccagacctgggtga	10	13	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	57994422	57994422	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	missense	c.547	p.E183K	0.010	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	23	0	0	39	19	32.76	-	-	-	T	57994422	C	T	57994422	3	4	748	1	0	0	0	0	1	0	0	0	3630	835	29	2	3338	2	CNGB1	16	57994422	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	924335	57994422	32360331	241	65788										
NFAT5	0	genome.wustl.edu	37	chr16	69718792	69718792	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	taatcttttttttaatagcaGcagctggtgctttgaatgta	8	5	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	69718792	69718792	G	T	SNP	NFAT5	ENST00000567990	human	ensembl	69_37n	1	known	splice_site	c.360-1	e6-1	0.992	-	-	-	no_errors	NFAT5	HGNC	ENSG00000102908	178	0	0	66	17	20.48	-	-	-	T	69718792	G	T	69718792	5	4	748	1	0	0	0	0	0	0	1	0	10432	985	34	4	1735	4	NFAT5	16	69718792	Splice_Site	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11724370	69718792	20635961	242	65789										
HP	0	genome.wustl.edu	37	chr16	72094180	72094180	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgaccacggctaaaaatctCttcctgaaccattcagaaaa	5	12	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	72094180	72094180	C	T	SNP	HP	ENST00000567185	human	ensembl	69_37n	1	novel	missense	c.604	p.L202F	0.999	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HP	HGNC	ENSG00000257017	68	0	0	57	17	22.97	-	-	-	T	72094180	C	T	72094180	3	4	748	1	0	0	0	0	1	0	0	0	7378	900	32	2	638	2	HP	16	72094180	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2375388	72094180	18260573	243	65790										
DHX38	0	genome.wustl.edu	37	chr16	72133171	72133171	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agcggcagcagtgggaagatGaccagagggtaaagttttat	15	5	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	72133171	72133171	G	A	SNP	DHX38	ENST00000268482	human	ensembl	69_37n	1	known	missense	c.952	p.D318N	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829	27	0	0	22	19	46.34	-	-	-	A	72133171	G	A	72133171	3	1	748	1	0	0	0	0	1	0	0	0	4547	1290	45	2	974	2	DHX38	16	72133171	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	38991	72133171	18221582	244	65791										
PMFBP1	0	genome.wustl.edu	37	chr16	72166725	72166725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agcctgcagggccttgcactCcgcctccttggacttgtcct	10	16	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	16	72166725	72166725	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	69_37n	-1	known	missense	c.1369	p.E457K	0.061	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	45	0	0	71	27	27.55	-	-	-	T	72166725	C	T	72166725	3	4	748	1	0	0	0	0	1	0	0	0	12208	864	30	2	1762	2	PMFBP1	16	72166725	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	33554	72166725	18188028	245	65792										
RPA1	0	genome.wustl.edu	37	chr17	1795220	1795220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaaatgctgcttatcttgggGaattaaaagacaaggtcagc	10	6	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	1795220	1795220	G	A	SNP	RPA1	ENST00000254719	human	ensembl	69_37n	1	known	missense	c.1645	p.E549K	1.000	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like,tigrfam_Rep_factor_Rpa1	pfam_Rep_factor-A_C,pfam_Rep_factor-A_N,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,tigrfam_Rep_factor_Rpa1	-	no_errors	RPA1	HGNC	ENSG00000132383	167	0	0	71	21	22.83	-	-	-	A	1795220	G	A	1795220	3	1	748	1	0	0	0	0	1	0	0	0	13622	1175	41	2	1703	2	RPA1	17	1795220	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		1795220	79399990	246	65793										
PAFAH1B1	0	genome.wustl.edu	37	chr17	2569362	2569362	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttggaaaaaaaatggacatCtgttattagattacaaaaga	7	3	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	2569362	2569362	C	G	SNP	PAFAH1B1	ENST00000397195	human	ensembl	69_37n	1	known	missense	c.170	p.S57C	1.000	pirsf_Dynein_regulator	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168	99	0	0	16	10	38.46	-	-	-	G	2569362	C	G	2569362	3	3	748	1	0	0	0	0	1	0	0	0	11457	913	32	2	180	2	PAFAH1B1	17	2569362	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	774142	2569362	78625848	247	65794										
DNAH2	0	genome.wustl.edu	37	chr17	7691442	7691442	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caacgcatgttcgaaaagctCatcaacaagatgctggcctt	8	11	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	7691442	7691442	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	silent	c.6780	p.L2260	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	36	0	0	47	22	31.43	-	-	-	T	7691442	C	T	7691442	2	4	748	1	0	0	0	0	0	0	0	1	4638	813	29	2		2	DNAH2	17	7691442	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5122080	7691442	73503768	248	65795										
GLP2R	0	genome.wustl.edu	37	chr17	9757871	9757871	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tacaccgtgggatactccttCtctcttatctccctcttcct	4	16	4	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	9757871	9757871	C	T	SNP	GLP2R	ENST00000458005	human	ensembl	69_37n	1	putative	missense	c.122	p.S41F	0.645	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLP2R	HGNC	ENSG00000065325	224	0	0	265	71	21.13	-	-	-	T	9757871	C	T	9757871	3	4	748	1	0	0	0	0	1	0	0	0	6505	912	32	2	582	2	GLP2R	17	9757871	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2066429	9757871	71437339	249	65796										
NOS2	0	genome.wustl.edu	37	chr17	26101330	26101330	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtagttcagcatctcctggtGaaacacgggggtgatgctcc	13	10	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	26101330	26101330	G	A	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.1429	p.H477Y	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	76	0	0	129	23	15.13	-	-	-	A	26101330	G	A	26101330	3	1	748	1	0	0	0	0	1	0	0	0	10615	1290	45	2	2096	2	NOS2	17	26101330	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	16343459	26101330	55093880	250	65797										
NUFIP2	0	genome.wustl.edu	37	chr17	27613780	27613780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcccattagaaaagttggcaGaagtaacagatttcagcgct	10	8	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	27613780	27613780	G	A	SNP	NUFIP2	ENST00000225388	human	ensembl	69_37n	-1	known	missense	c.1232	p.S411F	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256	122	0	0	125	27	17.76	-	-	-	A	27613780	G	A	27613780	3	1	748	1	0	0	0	0	1	0	0	0	10822	942	33	2	867	2	NUFIP2	17	27613780	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1512450	27613780	53581430	251	65798			2	109		3	3	362	G		7.365264e-06
NUFIP2	0	genome.wustl.edu	37	chr17	27613855	27613855	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gggtctgagtttccccggtaGatgatgaagatgatgaagat	14	5	1	8			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	27613855	27613855	G	T	SNP	NUFIP2	ENST00000225388	human	ensembl	69_37n	-1	known	missense	c.1157	p.S386Y	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256	170	0	0	164	46	21.9	-	-	-	T	27613855	G	T	27613855	3	4	748	1	0	0	0	0	1	0	0	0	10822	942	33	2	942	2	NUFIP2	17	27613855	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	75	27613855	53581355	252	65799			2	109		3	3	362	G		7.365264e-06
NUFIP2	0	genome.wustl.edu	37	chr17	27614141	27614141	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acccacagcaggttttcctcGacttgttcctccaggcccag	8	16	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	27614141	27614141	G	A	SNP	NUFIP2	ENST00000225388	human	ensembl	69_37n	-1	known	nonsense	c.871	p.R291*	0.910	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256	151	0	0	136	33	19.53	-	-	-	A	27614141	G	A	27614141	4	1	748	1	0	0	0	0	0	1	0	0	10822	1066	37	1	1228	1	NUFIP2	17	27614141	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	286	27614141	53581069	253	65800			2	109		3	3	362	G		7.365264e-06
ATAD5	0	genome.wustl.edu	37	chr17	29162675	29162675	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtttaagacaaaggaaaacaGagtttttcaaaagcagcact	8	6	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	29162675	29162675	G	C	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.1576	p.E526Q	0.113	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	89	0	0	49	13	20.97	-	-	-	C	29162675	G	C	29162675	3	2	748	1	0	0	0	0	1	0	0	0	1080	943	33	2	1582	2	ATAD5	17	29162675	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1548534	29162675	52032535	254	65801										
CCL13	0	genome.wustl.edu	37	chr17	32684555	32684555	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agtaagaagatctccttgcaGaggctgaagagctatgtgat	12	6	1	6			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	32684555	32684555	G	A	SNP	CCL13	ENST00000577681	human	ensembl	69_37n	1	novel	missense	c.52	p.E18K	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCL13	HGNC	ENSG00000181374	87	0	0	61	30	32.97	-	-	-	A	32684555	G	A	32684555	3	1	748	1	0	0	0	0	1	0	0	0	2911	933	33	2	144	2	CCL13	17	32684555	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3521880	32684555	48510655	255	65802										
DDX52	0	genome.wustl.edu	37	chr17	35981176	35981176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aaaaaagacaactcacctatCctgtggatatattccactga	5	10	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	35981176	35981176	C	T	SNP	DDX52	ENST00000591354	human	ensembl	69_37n	-1	known	missense	c.43	p.D15N	1.000	pfam_Helicase_C,pfscan_Helicase_C	pfam_Helicase_C,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DDX52	HGNC	ENSG00000141141	153	0	0	133	32	19.39	-	-	-	T	35981176	C	T	35981176	3	4	748	1	0	0	0	0	1	0	0	0	4401	854	30	2	322	2	DDX52	17	35981176	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3296621	35981176	45214034	256	65803										
ABI3	0	genome.wustl.edu	37	chr17	47299506	47299506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcctccacccctggatggaGatgaattggggctgcctcca	11	14	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	47299506	47299506	G	C	SNP	ABI3	ENST00000225941	human	ensembl	69_37n	1	known	missense	c.856	p.D286H	0.776	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	ABI3	HGNC	ENSG00000108798	26	0	0	61	20	24.69	-	-	-	C	47299506	G	C	47299506	3	2	748	1	0	0	0	0	1	0	0	0	90	942	33	2	882	2	ABI3	17	47299506	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11318330	47299506	33895704	257	65804										
EME1	0	genome.wustl.edu	37	chr17	48456488	48456488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgctcagaatcctccaagaaGagggaaacagggagcaaata	11	8	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	48456488	48456488	G	A	SNP	EME1	ENST00000393271	human	ensembl	69_37n	1	known	missense	c.1172	p.R391K	0.420	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920	89	0	0	154	24	13.41	-	-	-	A	48456488	G	A	48456488	3	1	748	1	0	0	0	0	1	0	0	0	5125	942	33	2	1190	2	EME1	17	48456488	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1156982	48456488	32738722	258	65805										
SCPEP1	0	genome.wustl.edu	37	chr17	55065576	55065576	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgtaattccttttcttgctaGacagttccattctacatttt	4	9	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	55065576	55065576	G	C	SNP	SCPEP1	ENST00000262288	human	ensembl	69_37n	1	known	splice_site	c.472-1	e5-1	1.000	-	-	-	no_errors	SCPEP1	HGNC	ENSG00000121064	260	0	0	211	48	18.53	-	-	-	C	55065576	G	C	55065576	5	2	748	1	0	0	0	0	0	0	1	0	14023	956	33	2	489	2	SCPEP1	17	55065576	Splice_Site	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	6609088	55065576	26129634	259	65806										
TANC2	0	genome.wustl.edu	37	chr17	61490920	61490920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acaggtccagccacatgggcGatggccacctccaagccaga	11	15	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	61490920	61490920	G	A	SNP	TANC2	ENST00000583356	human	ensembl	69_37n	1	putative	missense	c.3479	p.R1160Q	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	48	0	0	93	23	19.66	-	-	-	A	61490920	G	A	61490920	3	1	748	1	0	0	0	0	1	0	0	0	15637	1045	37	1	3779	1	TANC2	17	61490920	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	6425344	61490920	19704290	260	65807										
TBC1D16	0	genome.wustl.edu	37	chr17	77921632	77921632	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtagttcagcaggatcctccTgggaggcggtggagacagca	16	9	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	77921632	77921632	T	A	SNP	TBC1D16	ENST00000310924	human	ensembl	69_37n	-1	known	splice_site	c.1542-2	e8-2	1.000	-	-	-	no_errors	TBC1D16	HGNC	ENSG00000167291	9	0	0	22	10	31.25	-	-	-	A	77921632	T	A	77921632	5	1	748	1	0	0	0	0	0	0	1	0	15697	1594	55	5	779	5	TBC1D16	17	77921632	Splice_Site	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	16430712	77921632	3273578	261	65808										
NARF	0	genome.wustl.edu	37	chr17	80441594	80441594	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tacttcgtttgtctgcaggtGaaattgctcaaataatggag	10	6	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	17	80441594	80441594	G	A	SNP	NARF	ENST00000309794	human	ensembl	69_37n	1	known	missense	c.772	p.E258K	1.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562	100	0	0	143	55	27.64	-	-	-	A	80441594	G	A	80441594	3	1	748	1	0	0	0	0	1	0	0	0	10239	1291	45	2	944	2	NARF	17	80441594	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2519962	80441594	753616	262	65809										
MYL12A	0	genome.wustl.edu	37	chr18	3253328	3253328	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtttgctatgtttgaccagtCacagattcaggagttcaaag	10	7	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	18	3253328	3253328	C	T	SNP	MYL12A	ENST00000217652	human	ensembl	69_37n	1	known	missense	c.83	p.S28L	1.000	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL12A	HGNC	ENSG00000101608	164	0	0	122	53	30.29	-	-	-	T	3253328	C	T	3253328	3	4	748	1	0	0	0	0	1	0	0	0	10117	838	29	2	85	2	MYL12A	18	3253328	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		3253328	74823920	263	65810										
ARHGAP28	0	genome.wustl.edu	37	chr18	6876136	6876136	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcattgctttctagttttttGagaaagttgaggaatcaggt	10	4	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	18	6876136	6876136	G	C	SNP	ARHGAP28	ENST00000400091	human	ensembl	69_37n	1	known	missense	c.1219	p.E407Q	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756	273	0	0	160	50	23.81	-	-	-	C	6876136	G	C	6876136	3	2	748	1	0	0	0	0	1	0	0	0	879	1291	45	2	772	2	ARHGAP28	18	6876136	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3622808	6876136	71201112	264	65811										
PIAS2	0	genome.wustl.edu	37	chr18	44409752	44409752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atagcttctttcttcggtctCattggacaccaagaaccatc	6	12	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	18	44409752	44409752	C	T	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.1281	p.M427I	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	178	0	0	111	36	24.49	-	-	-	T	44409752	C	T	44409752	3	4	748	1	0	0	0	0	1	0	0	0	11950	826	29	2	679	2	PIAS2	18	44409752	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	37533616	44409752	33667496	265	65812										
RTTN	0	genome.wustl.edu	37	chr18	67833354	67833354	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttcactcgtggcaatgggtGagacaacatatggagaagca	12	7	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	18	67833354	67833354	G	T	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.1873	p.H625N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	61	0	0	52	18	25.35	-	-	-	T	67833354	G	T	67833354	3	4	748	1	0	0	0	0	1	0	0	0	13823	1290	45	2	4951	2	RTTN	18	67833354	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	23423602	67833354	10243894	266	65813										
HNRNPM	0	genome.wustl.edu	37	chr19	8533661	8533661	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttttctttctctttcaggatGagagggccttaccaaaagga	9	8	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	8533661	8533661	G	A	SNP	HNRNPM	ENST00000325495	human	ensembl	69_37n	1	known	missense	c.838	p.E280K	1.000	pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783	104	0	0	90	19	17.43	-	-	-	A	8533661	G	A	8533661	3	1	748	1	0	0	0	0	1	0	0	0	7322	1291	45	2	872	2	HNRNPM	19	8533661	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		8533661	50595322	267	65814										
MUC16	0	genome.wustl.edu	37	chr19	9058093	9058093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aactgaggtgctgctcaaatTtggagatgaactggttttag	12	5	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	9058093	9058093	T	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.29353	p.N9785D	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	86	0	0	54	31	36.47	-	-	-	C	9058093	T	C	9058093	3	2	748	1	0	0	0	0	1	0	0	0	10045	1841	64	5	14498	5	MUC16	19	9058093	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	524432	9058093	50070890	268	65815										
SMARCA4	0	genome.wustl.edu	37	chr19	11170495	11170495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggcagaaaatcgagaaggagGatgacagtgaaggcgaggag	18	4	0	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	11170495	11170495	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	missense	c.4798	p.D1600N	1.000	superfamily_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	24	0	0	62	12	16.22	-	-	-	A	11170495	G	A	11170495	3	1	748	1	0	0	0	0	1	0	0	0	14859	1174	41	2	4937	2	SMARCA4	19	11170495	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2112402	11170495	47958488	269	65816										
RTBDN	0	genome.wustl.edu	37	chr19	12936703	12936703	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggagcagccaccggtagggcGtggcccagagccgagcgaca	17	13	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	12936703	12936703	G	A	SNP	RTBDN	ENST00000322912	human	ensembl	69_37n	-1	known	silent	c.603	p.H201	0.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	RTBDN	HGNC	ENSG00000132026	11	0	0	7	5	41.67	-	-	-	A	12936703	G	A	12936703	2	1	748	1	0	0	0	0	0	0	0	1	13803	1136	40	1		1	RTBDN	19	12936703	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1766208	12936703	46192280	270	65817										
CACNA1A	0	genome.wustl.edu	37	chr19	13414674	13414674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gatcccgtcgtacatgacctCgttccagtcttcgcccgtca	8	16	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	13414674	13414674	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.2011	p.E671K	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	34	0	0	75	20	21.05	-	-	-	T	13414674	C	T	13414674	3	4	748	1	0	0	0	0	1	0	0	0	2563	893	31	1	5748	1	CACNA1A	19	13414674	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	477971	13414674	45714309	271	65818										
CYP4F3	0	genome.wustl.edu	37	chr19	15757899	15757899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gacaaggtcttctacagcttCctgaagccctggctgggtga	12	11	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	15757899	15757899	C	T	SNP	CYP4F3	ENST00000587360	human	ensembl	69_37n	1	known	missense	c.236	p.S79F	0.377	NULL	NULL	-	no_errors	CYP4F3	HGNC	ENSG00000186529	116	0	0	141	40	22.1	-	-	-	T	15757899	C	T	15757899	3	4	748	1	0	0	0	0	1	0	0	0	4221	854	30	2	391	2	CYP4F3	19	15757899	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2343225	15757899	43371084	272	65819										
FCHO1	0	genome.wustl.edu	37	chr19	17888953	17888953	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcaccctctctagctgtgcaGagagattgcagtcagaggag	12	10	3	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	17888953	17888953	G	C	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	missense	c.1267	p.E423Q	0.888	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	53	0	0	82	16	16.33	-	-	-	C	17888953	G	C	17888953	3	2	748	1	0	0	0	0	1	0	0	0	5833	943	33	2	1329	2	FCHO1	19	17888953	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2131054	17888953	41240030	273	65820										
MEF2B	0	genome.wustl.edu	37	chr19	19257861	19257861	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcacctgggggcccggctttGggggctgctggtcggaaggg	20	10	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	19257861	19257861	G	A	SNP	MEF2B	ENST00000162023	human	ensembl	69_37n	-1	known	silent	c.525	p.P175	1.000	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2B	HGNC	ENSG00000213999	10	0	0	27	6	18.18	-	-	-	A	19257861	G	A	19257861	2	1	748	1	0	0	0	0	0	0	0	1	9527	1335	47	4		4	MEF2B	19	19257861	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1368908	19257861	39871122	274	65821										
GMIP	0	genome.wustl.edu	37	chr19	19750962	19750962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tcccaggctgagatcgtgctCcagaaacagggtgtagatgt	13	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	19750962	19750962	C	T	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	missense	c.469	p.E157K	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	68	0	0	203	34	14.29	-	-	-	T	19750962	C	T	19750962	3	4	748	1	0	0	0	0	1	0	0	0	6543	864	30	2	2503	2	GMIP	19	19750962	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	493101	19750962	39378021	275	65822										
ZNF431	0	genome.wustl.edu	37	chr19	21365597	21365597	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	caaagaaggttataatgagcTaaaccagtgtttgacaacta	8	6	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	21365597	21365597	T	A	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.491	p.L164Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	227	0	0	127	30	19.11	-	-	-	A	21365597	T	A	21365597	3	1	748	1	0	0	0	0	1	0	0	0	18001	1522	53	5	509	5	ZNF431	19	21365597	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	1614635	21365597	37763386	276	65823										
ZNF181	0	genome.wustl.edu	37	chr19	35232425	35232425	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agagaagccttatgaatgtaGagaatgtgggaaagctttct	12	4	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	35232425	35232425	G	C	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	missense	c.1139	p.R380T	0.142	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	108	0	0	69	16	18.82	-	-	-	C	35232425	G	C	35232425	3	2	748	1	0	0	0	0	1	0	0	0	17845	942	33	2	1153	2	ZNF181	19	35232425	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	13866828	35232425	23896558	277	65824										
ZNF585B	0	genome.wustl.edu	37	chr19	37677367	37677367	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggtaaaggccttcccacactCagtacatatggaagatttct	8	10	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	37677367	37677367	C	T	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.1072	p.E358K	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	215	0	0	137	43	23.89	-	-	-	T	37677367	C	T	37677367	3	4	748	1	0	0	0	0	1	0	0	0	18114	835	29	2	1241	2	ZNF585B	19	37677367	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2444942	37677367	21451616	278	65825										
SIRT2	0	genome.wustl.edu	37	chr19	39371529	39371529	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	accaggaggaggtccaccttCaggaagtcctgcggggaggg	17	10	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	39371529	39371529	C	T	SNP	SIRT2	ENST00000249396	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	0.440	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT2	HGNC	ENSG00000068903	12	0	0	32	7	17.95	-	-	-	T	39371529	C	T	39371529	2	4	748	1	0	0	0	0	0	0	0	1	14427	813	29	2		2	SIRT2	19	39371529	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1694162	39371529	19757454	279	65826										
SPTBN4	0	genome.wustl.edu	37	chr19	41029470	41029470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agatgcaggtggccgtgcagGctgcagagggcctgctgagg	19	9	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	41029470	41029470	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	69_37n	1	known	missense	c.3781	p.A1261T	1.000	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	9	0	0	26	10	27.78	-	-	-	A	41029470	G	A	41029470	3	1	748	1	0	0	0	0	1	0	0	0	15212	1203	42	4	3843	4	SPTBN4	19	41029470	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1657941	41029470	18099513	280	65827										
PSG3	0	genome.wustl.edu	37	chr19	43233520	43233520	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagggtaaattctggggaggTctggaccatctggagcaaag	15	6	3	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	43233520	43233520	T	A	SNP	PSG3	ENST00000327495	human	ensembl	69_37n	-1	known	missense	c.998	p.D333V	0.294	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG3	HGNC	ENSG00000221826	157	0	0	91	49	35	-	-	-	A	43233520	T	A	43233520	3	1	748	1	0	0	0	0	1	0	0	0	12736	1667	58	5	296	5	PSG3	19	43233520	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	2204050	43233520	15895463	281	65828										
MYPOP	0	genome.wustl.edu	37	chr19	46393934	46393934	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgtagggaaaccttttctccGcttgtgtgggggggagtcgt	16	7	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	46393934	46393934	G	C	SNP	MYPOP	ENST00000322217	human	ensembl	69_37n	-1	known	missense	c.1147	p.R383G	0.999	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYPOP	HGNC	ENSG00000176182	8	0	0	13	11	45.83	-	-	-	C	46393934	G	C	46393934	3	2	748	1	0	0	0	0	1	0	0	0	10171	1086	38	3	56	3	MYPOP	19	46393934	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3160414	46393934	12735049	282	65829										
HRC	0	genome.wustl.edu	37	chr19	49655283	49655283	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggagcgcagaccgtttcgcaGaccagcgggcagagatagca	15	11	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	49655283	49655283	G	C	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	silent	c.2004	p.V668	1.000	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	16	0	0	38	15	28.3	-	-	-	C	49655283	G	C	49655283	2	2	748	1	0	0	0	0	0	0	0	1	7403	929	33	2		2	HRC	19	49655283	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	3261349	49655283	9473700	283	65830										
PTOV1	0	genome.wustl.edu	37	chr19	50360970	50360970	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcagtgggacctggtggtgtCaactcaggcccagtccagat	14	11	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	50360970	50360970	C	G	SNP	PTOV1	ENST00000391842	human	ensembl	69_37n	1	known	silent	c.735	p.V245	0.003	NULL	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960	38	0	0	91	17	15.74	-	-	-	G	50360970	C	G	50360970	2	3	748	1	0	0	0	0	0	0	0	1	12850	813	29	2		2	PTOV1	19	50360970	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	705687	50360970	8768013	284	65831										
ZNF528	0	genome.wustl.edu	37	chr19	52919501	52919501	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atagtggagagaaaccttatGaatgtaaagaatgtggcaaa	11	3	0	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	52919501	52919501	G	A	SNP	ZNF528	ENST00000360465	human	ensembl	69_37n	1	known	missense	c.1396	p.E466K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555	66	0	0	51	9	15	-	-	-	A	52919501	G	A	52919501	3	1	748	1	0	0	0	0	1	0	0	0	18065	1291	45	2	1410	2	ZNF528	19	52919501	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2558531	52919501	6209482	285	65832										
ZNF28	0	genome.wustl.edu	37	chr19	53304398	53304398	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctcttctaagtgggttatctGatgtttttttaaaagtgagc	9	5	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	53304398	53304398	G	C	SNP	ZNF28	ENST00000457749	human	ensembl	69_37n	-1	known	missense	c.700	p.Q234E	0.199	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538	259	0	0	168	37	18.05	-	-	-	C	53304398	G	C	53304398	3	2	748	1	0	0	0	0	1	0	0	0	17909	1299	45	2	1460	2	ZNF28	19	53304398	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	384897	53304398	5824585	286	65833										
NLRP2	0	genome.wustl.edu	37	chr19	55493625	55493625	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	aagaggtccaggttatggctGagagatacaagatgctgatc	13	6	0	5			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	55493625	55493625	G	C	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	missense	c.559	p.E187Q	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	38	0	0	86	11	11.34	-	-	-	C	55493625	G	C	55493625	3	2	748	1	0	0	0	0	1	0	0	0	10549	1291	45	2	577	2	NLRP2	19	55493625	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2189227	55493625	3635358	287	65834										
ZNF470	0	genome.wustl.edu	37	chr19	57088676	57088676	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	actgaatgtgggaaagccttCagccagaatgctcatcttgt	10	9	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	57088676	57088676	C	A	SNP	ZNF470	ENST00000330619	human	ensembl	69_37n	1	known	missense	c.879	p.F293L	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	104	0	0	95	14	12.84	-	-	-	A	57088676	C	A	57088676	3	1	748	1	0	0	0	0	1	0	0	0	18025	825	29	2	893	2	ZNF470	19	57088676	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1595051	57088676	2040307	288	65835										
ZNF470	0	genome.wustl.edu	37	chr19	57088944	57088944	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctttcaggcagaatgcttctCttatacgtcatcggcgatat	8	10	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	57088944	57088944	C	G	SNP	ZNF470	ENST00000330619	human	ensembl	69_37n	1	known	missense	c.1147	p.L383V	0.569	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	130	0	0	120	24	16.67	-	-	-	G	57088944	C	G	57088944	3	3	748	1	0	0	0	0	1	0	0	0	18025	913	32	2	1161	2	ZNF470	19	57088944	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	268	57088944	2040039	289	65836										
ZNF776	0	genome.wustl.edu	37	chr19	58265613	58265613	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcatcagcgagttcacactgGagaaagaccttttgagtgta	11	8	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	58265613	58265613	G	C	SNP	ZNF776	ENST00000317178	human	ensembl	69_37n	1	known	missense	c.1115	p.G372A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	157	0	0	163	39	19.31	-	-	-	C	58265613	G	C	58265613	3	2	748	1	0	0	0	0	1	0	0	0	18242	1174	41	2	1125	2	ZNF776	19	58265613	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1176669	58265613	863370	290	65837										
ZNF324	0	genome.wustl.edu	37	chr19	58980584	58980584	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggatgtggctgtgtacttctCccaggaggagtgggggctcc	17	9	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	19	58980584	58980584	C	T	SNP	ZNF324	ENST00000196482	human	ensembl	69_37n	1	known	missense	c.32	p.S11F	0.998	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	70	0	0	88	27	23.48	-	-	-	T	58980584	C	T	58980584	3	4	748	1	0	0	0	0	1	0	0	0	17940	855	30	2	34	2	ZNF324	19	58980584	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	714971	58980584	148399	291	65838										
SIRPB1	0	genome.wustl.edu	37	chr20	1559202	1559202	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agattaattcccggcctgctCcagctcctctaaaccacatg	6	15	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	1559202	1559202	C	G	SNP	SIRPB1	ENST00000381605	human	ensembl	69_37n	-1	known	missense	c.215	p.G72A	0.001	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPB1	HGNC	ENSG00000101307	146	0	0	111	54	32.73	-	-	-	G	1559202	C	G	1559202	3	3	748	1	0	0	0	0	1	0	0	0	14422	855	30	2	997	2	SIRPB1	20	1559202	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		1559202	61466318	292	65839										
ADAM33	0	genome.wustl.edu	37	chr20	3655266	3655266	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tccgaaagatctcgtgggttGagaagtccttggagccccgg	14	10	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	3655266	3655266	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	nonsense	c.485	p.S162*	0.006	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	22	0	0	39	14	26.42	-	-	-	C	3655266	G	C	3655266	4	2	748	1	0	0	0	0	0	1	0	0	250	1294	45	2	2024	2	ADAM33	20	3655266	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	2096064	3655266	59370254	293	65840										
SIGLEC1	0	genome.wustl.edu	37	chr20	3677446	3677446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gaacaaggccagcaaggccaGggggcggctgtccacagtgc	16	12	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	3677446	3677446	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.2470	p.L824	0.035	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	10	0	0	13	5	27.78	-	-	-	A	3677446	G	A	3677446	2	1	748	1	0	0	0	0	0	0	0	1	14394	991	35	4		4	SIGLEC1	20	3677446	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	22180	3677446	59348074	294	65841										
BMP2	0	genome.wustl.edu	37	chr20	6759581	6759581	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccactaatcatgccattgttCagacgttggtcaactctgtt	7	11	4	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	6759581	6759581	C	T	SNP	BMP2	ENST00000378827	human	ensembl	69_37n	1	known	nonsense	c.1036	p.Q346*	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845	80	0	0	127	36	22.09	-	-	-	T	6759581	C	T	6759581	4	4	748	1	0	0	0	0	0	1	0	0	1464	827	29	2	1042	2	BMP2	20	6759581	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	3082135	6759581	56265939	295	65842										
C20orf72	0	genome.wustl.edu	37	chr20	17956500	17956500	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttgaaagtgctgttcaacatGaaaccttaaactatataggt	7	6	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	17956500	17956500	G	A	SNP	C20orf72	ENST00000377710	human	ensembl	69_37n	1	known	missense	c.685	p.E229K	0.419	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	C20orf72	HGNC	ENSG00000125871	172	0	0	153	34	18.18	-	-	-	A	17956500	G	A	17956500	3	1	748	1	0	0	0	0	1	0	0	0	2138	1291	45	2	691	2	C20orf72	20	17956500	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11196919	17956500	45069020	296	65843										
KIF3B	0	genome.wustl.edu	37	chr20	30898618	30898618	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	attaagaacaaaccaagggtCaatgaggaccccaaggatgc	10	9	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	30898618	30898618	C	T	SNP	KIF3B	ENST00000375712	human	ensembl	69_37n	1	known	silent	c.1038	p.V346	1.000	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	41	0	0	54	13	19.4	-	-	-	T	30898618	C	T	30898618	2	4	748	1	0	0	0	0	0	0	0	1	8353	813	29	2		2	KIF3B	20	30898618	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	12942118	30898618	32126902	297	65844										
PXMP4	0	genome.wustl.edu	37	chr20	32295624	32295624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcagcgagggctgcagggtgGatcggtgatactcaaagagc	17	8	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	32295624	32295624	G	A	SNP	PXMP4	ENST00000409299	human	ensembl	69_37n	-1	known	missense	c.527	p.S176F	0.829	pirsf_Pmp4	pirsf_Pmp4	-	no_errors	PXMP4	HGNC	ENSG00000101417	52	0	0	62	22	26.19	-	-	-	A	32295624	G	A	32295624	3	1	748	1	0	0	0	0	1	0	0	0	12934	1174	41	2	115	2	PXMP4	20	32295624	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	1397006	32295624	30729896	298	65845										
CHD6	0	genome.wustl.edu	37	chr20	40045305	40045305	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cggctctgagaggctggttcGagaaccagcactgctggtta	14	10	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	40045305	40045305	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	nonsense	c.6409	p.R2137*	0.950	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	17	0	0	36	16	30.77	-	-	-	A	40045305	G	A	40045305	4	1	748	1	0	0	0	0	0	1	0	0	3358	1066	37	1	1758	1	CHD6	20	40045305	Nonsense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	7749681	40045305	22980215	299	65846										
NCOA5	0	genome.wustl.edu	37	chr20	44708029	44708029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcttcagggtactttaccttCgtgtggggctgggtcttgat	14	8	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	44708029	44708029	C	T	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.35	p.R12Q	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	253	0	0	262	75	22.26	-	-	-	T	44708029	C	T	44708029	3	4	748	1	0	0	0	0	1	0	0	0	10304	884	31	1	1732	1	NCOA5	20	44708029	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4662724	44708029	18317491	300	65847										
SULF2	0	genome.wustl.edu	37	chr20	46365493	46365493	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tacacggcaaaggtgcggctCtcgtgctgtgcctgccagga	14	12	1	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	46365493	46365493	C	T	SNP	SULF2	ENST00000359930	human	ensembl	69_37n	-1	known	silent	c.369	p.E123	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562	65	0	0	151	44	22.56	-	-	-	T	46365493	C	T	46365493	2	4	748	1	0	0	0	0	0	0	0	1	15462	912	32	2		2	SULF2	20	46365493	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1657464	46365493	16660027	301	65848										
EDN3	0	genome.wustl.edu	37	chr20	57876668	57876668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ctgggcaggagcaggcggccGagggggcccctgagcaccac	18	14	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	20	57876668	57876668	G	A	SNP	EDN3	ENST00000337938	human	ensembl	69_37n	1	known	missense	c.256	p.E86K	0.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205	11	0	0	38	9	18.75	-	-	-	A	57876668	G	A	57876668	3	1	748	1	0	0	0	0	1	0	0	0	4953	1059	37	1	262	1	EDN3	20	57876668	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11511175	57876668	5148852	302	65849										
TPTE	0	genome.wustl.edu	37	chr21	10941954	10941954	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gccttccagaagatggaaatGacatagcaataatacgttct	8	8	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	21	10941954	10941954	G	A	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.749	p.S250L	1.000	pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	338	0	0	195	28	12.56	-	-	-	A	10941954	G	A	10941954	3	1	748	1	0	0	0	0	1	0	0	0	16526	1294	45	2	950	2	TPTE	21	10941954	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		10941954	37187941	303	65850										
CLDN8	0	genome.wustl.edu	37	chr21	31587809	31587809	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	attgagttatagaaatctctGatgatggcattggcaaccca	9	7	1	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	21	31587809	31587809	G	A	SNP	CLDN8	ENST00000286809	human	ensembl	69_37n	-1	known	silent	c.435	p.I145	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284	60	0	0	70	27	27.84	-	-	-	A	31587809	G	A	31587809	2	1	748	1	0	0	0	0	0	0	0	1	3521	1280	45	2		2	CLDN8	21	31587809	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	20645855	31587809	16542086	304	65851										
PRDM15	0	genome.wustl.edu	37	chr21	43222950	43222950	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtctctttctctgagtattcGctgaaggtggcgtcctcggg	13	10	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	21	43222950	43222950	G	A	SNP	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	silent	c.3963	p.S1321	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	47	0	0	85	25	22.73	-	-	-	A	43222950	G	A	43222950	2	1	748	1	0	0	0	0	0	0	0	1	12537	1078	38	1		1	PRDM15	21	43222950	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11635141	43222950	4906945	305	65852										
PRMT2	0	genome.wustl.edu	37	chr21	48084230	48084230	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggagaaaaagtcttccccatCtggagatgacagttgatgct	11	8	2	4			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	21	48084230	48084230	C	T	SNP	PRMT2	ENST00000451211	human	ensembl	69_37n	1	known	missense	c.854	p.S285F	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	133	0	0	95	35	26.92	-	-	-	T	48084230	C	T	48084230	3	4	748	1	0	0	0	0	1	0	0	0	12618	903	32	2	1331	2	PRMT2	21	48084230	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4861280	48084230	45665	306	65853										
MTMR3	0	genome.wustl.edu	37	chr22	30415818	30415818	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtaaagaggaccctctcttaGaaaaggagagcaggaggaag	14	6	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	22	30415818	30415818	G	A	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.2170	p.E724K	0.022	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	32	0	0	25	6	19.35	-	-	-	A	30415818	G	A	30415818	3	1	748	1	0	0	0	0	1	0	0	0	10017	943	33	2	2228	2	MTMR3	22	30415818	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09		30415818	20888748	307	65854										
ZC3H7B	0	genome.wustl.edu	37	chr22	41752441	41752441	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	atcagttctcgggaaggggaGaagcagatccagatgcccac	13	10	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	22	41752441	41752441	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	silent	c.2478	p.E826	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	31	0	0	24	10	29.41	-	-	-	A	41752441	G	A	41752441	2	1	748	1	0	0	0	0	0	0	0	1	17669	933	33	2		2	ZC3H7B	22	41752441	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	11336623	41752441	9552125	308	65855										
ZBED4	0	genome.wustl.edu	37	chr22	50279480	50279480	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgtcccaccttaaggaagctGagagtggtgtgatccacttc	11	10	0	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	22	50279480	50279480	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	69_37n	1	known	missense	c.2170	p.E724K	1.000	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	43	0	0	50	10	16.67	-	-	-	A	50279480	G	A	50279480	3	1	748	1	0	0	0	0	1	0	0	0	17616	1291	45	2	2172	2	ZBED4	22	50279480	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	8527039	50279480	1025086	309	65856										
CHKB	0	genome.wustl.edu	37	chr22	51018232	51018232	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ggtctcacctttctttgcctCtgccaggtaatgacgaataa	8	11	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	22	51018232	51018232	C	T	SNP	CHKB	ENST00000464225	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.987	-	-	-	no_errors	CHKB	HGNC	ENSG00000100288	124	0	0	139	36	20.57	-	-	-	T	51018232	C	T	51018232	5	4	748	1	0	0	0	0	0	0	1	0	3377	922	32	2	244	2	CHKB	22	51018232	Splice_Site	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	738752	51018232	286334	310	65857										
MXRA5	0	genome.wustl.edu	37	chrX	3242463	3242463	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tctgcaagaatctgggctctCacacctgtgtagtaaagagc	10	10	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	3242463	3242463	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.1263	p.V421	0.503	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	60	0	0	74	15	16.85	-	-	-	A	3242463	C	A	3242463	2	1	748	1	0	0	0	0	0	0	0	1	10075	813	29	2		2	MXRA5	23	3242463	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09		3242463	152028097	311	65858										
MXRA5	0	genome.wustl.edu	37	chrX	3248697	3248697	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gggtttacctgaagagagctGaggtctcttaaagctccatc	11	9	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	3248697	3248697	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.306	p.L102	0.001	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	127	0	0	120	39	24.53	-	-	-	A	3248697	G	A	3248697	2	1	748	1	0	0	0	0	0	0	0	1	10075	1277	45	2		2	MXRA5	23	3248697	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	6234	3248697	152021863	312	65859										
RAI2	0	genome.wustl.edu	37	chrX	17818567	17818567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tggaaaaaaggtggccagccGttgttttttgattgggagca	14	5	0	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	17818567	17818567	G	A	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.1564	p.R522W	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	366	0	0	194	52	21.14	-	-	-	A	17818567	G	A	17818567	3	1	748	1	0	0	0	0	1	0	0	0	13092	1144	40	1	32	1	RAI2	23	17818567	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	14569870	17818567	137451993	313	65860										
GRIPAP1	0	genome.wustl.edu	37	chrX	48841752	48841752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	agcctgctgctgctgcaactCagctgccagcccagtggtct	11	15	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	48841752	48841752	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369K	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	83	0	0	212	49	18.7	-	-	-	T	48841752	C	T	48841752	3	4	748	1	0	0	0	0	1	0	0	0	6840	835	29	2	1526	2	GRIPAP1	23	48841752	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	31023185	48841752	106428808	314	65861										
IQSEC2	0	genome.wustl.edu	37	chrX	53267381	53267381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cgcaatggactcgcgcaggtCggatgtaaagcgcagccggt	15	11	0	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	53267381	53267381	C	T	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3223	p.D1075N	1.000	smart_Pleckstrin_homology	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	34	0	0	82	21	20.39	-	-	-	T	53267381	C	T	53267381	3	4	748	1	0	0	0	0	1	0	0	0	7872	884	31	1	1259	1	IQSEC2	23	53267381	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	4425629	53267381	102003179	315	65862										
FAM123B	0	genome.wustl.edu	37	chrX	63410170	63410170	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gatagtgatattgacatggtCataggaggtatgcaacaggt	13	4	1	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	63410170	63410170	C	T	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.2997	p.M999I	0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	43	0	0	65	16	19.75	-	-	-	T	63410170	C	T	63410170	3	4	748	1	0	0	0	0	1	0	0	0	5463	826	29	2	414	2	FAM123B	23	63410170	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	10142789	63410170	91860390	316	65863										
GDPD2	0	genome.wustl.edu	37	chrX	69650936	69650936	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gcctgagccactgcccccctCagcctcccggttataagcat	8	18	1	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	69650936	69650936	C	T	SNP	GDPD2	ENST00000453994	human	ensembl	69_37n	1	known	nonsense	c.1420	p.Q474*	0.006	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	94	0	0	96	25	20.66	-	-	-	T	69650936	C	T	69650936	4	4	748	1	0	0	0	0	0	1	0	0	6376	827	29	2	1466	2	GDPD2	23	69650936	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	6240766	69650936	85619624	317	65864										
UPRT	0	genome.wustl.edu	37	chrX	74517354	74517354	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tatgaaggagtgaaatttgaGaagggaaattgtggggtcag	16	1	1	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	74517354	74517354	G	A	SNP	UPRT	ENST00000373383	human	ensembl	69_37n	1	known	silent	c.528	p.E176	1.000	NULL	pfam_PRibTrfase	-	no_errors	UPRT	HGNC	ENSG00000094841	448	0	0	294	75	20.33	-	-	-	A	74517354	G	A	74517354	2	1	748	1	0	0	0	0	0	0	0	1	17111	933	33	2		2	UPRT	23	74517354	Silent	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	4866418	74517354	80753206	318	65865										
BRWD3	0	genome.wustl.edu	37	chrX	79932203	79932203	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	accaagattcagaggatcctCagtggacacaaaattgtcat	8	9	3	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	79932203	79932203	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.5314	p.E1772K	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	126	0	0	50	24	32.43	-	-	-	T	79932203	C	T	79932203	3	4	748	1	0	0	0	0	1	0	0	0	1534	835	29	2	98	2	BRWD3	23	79932203	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	5414849	79932203	75338357	319	65866										
NXF3	0	genome.wustl.edu	37	chrX	102338576	102338576	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	acactgcattcattctgaatCaaattcagcagccacttctc	4	13	5	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	102338576	102338576	C	G	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.396	p.L132F	0.240	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	208	0	0	209	52	19.92	-	-	-	G	102338576	C	G	102338576	3	3	748	1	0	0	0	0	1	0	0	0	10858	825	29	2	1263	2	NXF3	23	102338576	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	22406373	102338576	52931984	320	65867										
ESX1	0	genome.wustl.edu	37	chrX	103499124	103499124	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gccgccgccaccctcacggtCttggtcgtccgaggggacgg	15	16	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	103499124	103499124	C	T	SNP	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	missense	c.217	p.D73N	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	13	0	0	32	10	23.81	-	-	-	T	103499124	C	T	103499124	3	4	748	1	0	0	0	0	1	0	0	0	5300	913	32	2	1015	2	ESX1	23	103499124	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	1160548	103499124	51771436	321	65868										
CLDN2	0	genome.wustl.edu	37	chrX	106171608	106171608	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gttggcttctccaagggcctCtggatggaatgtgccacaca	12	11	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	106171608	106171608	C	G	SNP	CLDN2	ENST00000336803	human	ensembl	69_37n	1	known	silent	c.150	p.L50	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin2,prints_Claudin,prints_Claudin14	-	no_errors	CLDN2	HGNC	ENSG00000165376	34	0	0	52	16	23.53	-	-	-	G	106171608	C	G	106171608	2	3	748	1	0	0	0	0	0	0	0	1	3511	900	32	2		2	CLDN2	23	106171608	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	2672484	106171608	49098952	322	65869										
CLDN2	0	genome.wustl.edu	37	chrX	106171827	106171827	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gtggcggtagcaggtggagtCtttttcatccttggaggcct	15	8	2	0			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	106171827	106171827	C	G	SNP	CLDN2	ENST00000336803	human	ensembl	69_37n	1	known	silent	c.369	p.V123	0.939	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin2,prints_Claudin,prints_Claudin14	-	no_errors	CLDN2	HGNC	ENSG00000165376	119	0	0	147	45	23.44	-	-	-	G	106171827	C	G	106171827	2	3	748	1	0	0	0	0	0	0	0	1	3511	900	32	2		2	CLDN2	23	106171827	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	219	106171827	49098733	323	65870										
STAG2	0	genome.wustl.edu	37	chrX	123182867	123182867	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ttttacagcttcaggaaaatCaagatgaaatagaaaatatg	7	4	2	3			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	123182867	123182867	C	G	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.832	p.Q278E	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	286	1	0.35	205	60	22.64	-	-	-	G	123182867	C	G	123182867	3	3	748	1	0	0	0	0	1	0	0	0	15334	827	29	2	862	2	STAG2	23	123182867	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	17011040	123182867	32087693	324	65871										
ZNF75D	0	genome.wustl.edu	37	chrX	134427833	134427833	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tttgagtggatctctggcctCagccactgatggcacaattt	10	10	2	2			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	134427833	134427833	C	T	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	silent	c.234	p.L78	0.028	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	72	0	0	64	17	20.99	-	-	-	T	134427833	C	T	134427833	2	4	748	1	0	0	0	0	0	0	0	1	18228	813	29	2		2	ZNF75D	23	134427833	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	11244966	134427833	20842727	325	65872										
DDX26B	0	genome.wustl.edu	37	chrX	134715540	134715540	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cacaacaacattagtcacatCaacagcagatcatcatgtta	4	11	4	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	134715540	134715540	C	A	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	silent	c.2565	p.I855	1.000	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	169	0	0	140	32	18.6	-	-	-	A	134715540	C	A	134715540	2	1	748	1	0	0	0	0	0	0	0	1	4384	816	29	2		2	DDX26B	23	134715540	Silent	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	287707	134715540	20555020	326	65873										
MAP7D3	0	genome.wustl.edu	37	chrX	135309524	135309524	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	tgttgctgcccatctttgagTttcaagtggtcttctgcttg	10	9	4	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	135309524	135309524	T	A	SNP	MAP7D3	ENST00000370663	human	ensembl	69_37n	-1	known	missense	c.1899	p.K633N	0.000	pfam_E-MAP-115	pfam_E-MAP-115	-	no_errors	MAP7D3	HGNC	ENSG00000129680	438	0	0	316	84	21	-	-	-	A	135309524	T	A	135309524	3	1	748	1	0	0	0	0	1	0	0	0	9340	1722	60	5	705	5	MAP7D3	23	135309524	Missense_Mutation	SNP	T	TCGA-E2-A10C-01A-21D-A10M-09	593984	135309524	19961036	327	65874										
HTATSF1	0	genome.wustl.edu	37	chrX	135593186	135593186	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	cgtttgaagaacctatagatGagaagaagtttgaaaagaca	10	4	0	7			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	135593186	135593186	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1282	p.E428K	0.811	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	38	0	0	30	9	23.08	-	-	-	A	135593186	G	A	135593186	3	1	748	1	0	0	0	0	1	0	0	0	7487	1291	45	2	1316	2	HTATSF1	23	135593186	Missense_Mutation	SNP	G	TCGA-E2-A10C-01A-21D-A10M-09	283662	135593186	19677374	328	65875										
GPR101	0	genome.wustl.edu	37	chrX	136112924	136112924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	gctgctctctctgacctcctCgctgcccctggcctctacac	7	20	3	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	136112924	136112924	C	T	SNP	GPR101	ENST00000298110	human	ensembl	69_37n	-1	known	missense	c.910	p.E304K	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	74	0	0	160	45	21.95	-	-	-	T	136112924	C	T	136112924	3	4	748	1	0	0	0	0	1	0	0	0	6672	893	31	1	619	1	GPR101	23	136112924	Missense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	519738	136112924	19157636	329	65876										
ABCD1	0	genome.wustl.edu	37	chrX	153001904	153001904	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.663636363636364	219	6.17261241817269e-95	4.3009540329575	4.70670441342519	4.06971994516409	4.64991162701504e-05	0.00181904542848828	168	ccagggagctagaggacgctCaggcggggtctgggaccata	17	10	2	1			TCGA-E2-A10C-01A-21D-A10M-09	TCGA-E2-A10C-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2750ed41-0bd4-4cf4-98f5-762957cf80b7	92567dce-0f9e-4885-8260-0196fef7a91b	X	153001904	153001904	C	T	SNP	ABCD1	ENST00000218104	human	ensembl	69_37n	1	known	nonsense	c.1330	p.Q444*	0.010	tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986	33	0	0	77	27	25.96	-	-	-	T	153001904	C	T	153001904	4	4	748	1	0	0	0	0	0	1	0	0	60	827	29	2	1344	2	ABCD1	23	153001904	Nonsense_Mutation	SNP	C	TCGA-E2-A10C-01A-21D-A10M-09	16888980	153001904	2268656	330	65877										
CSF1	0	genome.wustl.edu	37	chr1	110466401	110466401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	tggaatcacaccccccagaaGacagaccatccatctgccct	6	17	2	3			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	1	110466401	110466401	G	C	SNP	CSF1	ENST00000329608	human	ensembl	69_37n	1	known	missense	c.1158	p.K386N	0.810	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371	52	0	0	39	10	20.41	-	-	-	C	110466401	G	C	110466401	3	2	749	1	0	0	0	0	1	0	0	0	3963	933	33	2	1180	2	CSF1	1	110466401	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		110466401	138784220	1	65878										
DDR2	0	genome.wustl.edu	37	chr1	162746132	162746132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ccgggcagtgctccctatccGctggatgtcttgggagagta	14	11	1	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	1	162746132	162746132	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.2255	p.R752H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	87	0	0	94	29	23.58	-	-	-	A	162746132	G	A	162746132	3	1	749	1	0	0	0	0	1	0	0	0	4368	1087	38	1	2309	1	DDR2	1	162746132	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09	52279731	162746132	86504489	2	65879										
RALGPS2	0	genome.wustl.edu	37	chr1	178780488	178780488	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	agagagattcttcatgctcaAacattaaaaattagagcaga	7	6	3	4			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	1	178780488	178780488	A	G	SNP	RALGPS2	ENST00000367635	human	ensembl	69_37n	1	known	silent	c.336	p.Q112	0.991	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS2	HGNC	ENSG00000116191	41	0	0	48	57	54.29	-	-	-	G	178780488	A	G	178780488	2	3	749	1	0	0	0	0	0	0	0	1	13101	11	1	5		5	RALGPS2	1	178780488	Silent	SNP	A	TCGA-E2-A10E-01A-21D-A10M-09	16034356	178780488	70470133	3	65880										
NR5A2	0	genome.wustl.edu	37	chr1	200012952	200012952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	atgatgaagatctggaagagCtttgtcccgtgtgtggagat	14	5	1	5			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	1	200012952	200012952	C	T	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.253	p.L85F	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	209	0	0	218	112	33.84	-	-	-	T	200012952	C	T	200012952	3	4	749	1	0	0	0	0	1	0	0	0	10709	797	28	4	263	4	NR5A2	1	200012952	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09	21232464	200012952	49237669	4	65881										
OTOF	0	genome.wustl.edu	37	chr2	26688892	26688892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	cagtcttgcctagccggatgGcgatgtaggggtcagctttg	15	9	2	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	2	26688892	26688892	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.4553	p.A1518V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	360	0	0	268	185	40.84	-	-	-	A	26688892	G	A	26688892	3	1	749	1	0	0	0	0	1	0	0	0	11376	1203	42	4	1665	4	OTOF	2	26688892	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		26688892	216510481	5	65882										
TTN	0	genome.wustl.edu	37	chr2	179650417	179650417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gagggctagctgtgcgggggCgtttatccacatggactaat	15	8	0	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	2	179650417	179650417	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.2423	p.R808H	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	300	0	0	221	120	35.19	-	-	-	T	179650417	C	T	179650417	3	4	749	1	0	0	0	0	1	0	0	0	16832	768	27	1	108957	1	TTN	2	179650417	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09	152961525	179650417	63548956	6	65883										
USP40	0	genome.wustl.edu	37	chr2	234428319	234428319	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ttcgaatatcaaacaccatcTaaaacagagaaataaaataa	3	7	2	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	2	234428319	234428319	T	C	SNP	USP40	ENST00000450966	human	ensembl	69_37n	-1	known	splice_site	c.2359-2	e17-2	1.000	-	-	-	no_errors	USP40	HGNC	ENSG00000085982	96	0	0	70	46	39.66	-	-	-	C	234428319	T	C	234428319	5	2	749	1	0	0	0	0	0	0	1	0	17169	1536	53	5	1446	5	USP40	2	234428319	Splice_Site	SNP	T	TCGA-E2-A10E-01A-21D-A10M-09	54777902	234428319	8771054	7	65884										
MAST4	0	genome.wustl.edu	37	chr5	66459337	66459337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ggtccccgctgctcaagcgcGtgcagtccgaggagaagctg	15	13	1	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	5	66459337	66459337	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	missense	c.4339	p.V1447M	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST4	HGNC	ENSG00000069020	13	0	0	10	9	47.37	-	-	-	A	66459337	G	A	66459337	3	1	749	1	0	0	0	0	1	0	0	0	9398	1145	40	1	4574	1	MAST4	5	66459337	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		66459337	114455923	8	65885										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711179	140711179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ataaagaaccactagatttcGaagaatacaaaatgtattca	5	6	1	3			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	5	140711179	140711179	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.928	p.E310K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	46	0	0	27	15	35.71	-	-	-	A	140711179	G	A	140711179	3	1	749	1	0	0	0	0	1	0	0	0	11623	1059	37	1	930	1	PCDHGA1	5	140711179	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09	74251842	140711179	40204081	9	65886										
BTNL8	0	genome.wustl.edu	37	chr5	180376957	180376957	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	cgaagctctgcgtttctgatCtgaaaactgtaacccataga	8	10	3	3			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	5	180376957	180376957	C	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	1	known	missense	c.916	p.L306M	0.485	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	95	0	0	89	41	31.54	-	-	-	A	180376957	C	A	180376957	3	1	749	1	0	0	0	0	1	0	0	0	1576	912	32	2	1102	2	BTNL8	5	180376957	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09	39665778	180376957	538303	10	65887										
PAXIP1	0	genome.wustl.edu	37	chr7	154752763	154752763	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ggtatcctccactctttggcTttttcatactttaaaccagt	5	11	2	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	7	154752763	154752763	T	A	SNP	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	missense	c.2274	p.K758N	0.979	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	199	0	0	175	27	13.37	-	-	-	A	154752763	T	A	154752763	3	1	749	1	0	0	0	0	1	0	0	0	11560	1606	56	5	975	5	PAXIP1	7	154752763	Missense_Mutation	SNP	T	TCGA-E2-A10E-01A-21D-A10M-09		154752763	4385900	11	65888										
COLEC10	0	genome.wustl.edu	37	chr8	120103458	120103458	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	actgggcccattgggaagaaGggtaagttgcatcttactat	12	7	1	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	8	120103458	120103458	G	C	SNP	COLEC10	ENST00000332843	human	ensembl	69_37n	1	known	missense	c.291	p.K97N	1.000	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC10	HGNC	ENSG00000184374	135	0	0	127	52	29.05	-	-	-	C	120103458	G	C	120103458	3	2	749	1	0	0	0	0	1	0	0	0	3740	1014	35	4	301	4	COLEC10	8	120103458	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		120103458	26260564	12	65889										
TG	0	genome.wustl.edu	37	chr8	133948004	133948004	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	catctttccatctccagaaaCgagatgcactggggaactca	8	12	3	2			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	8	133948004	133948004	C	T	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	nonsense	c.4936	p.R1646*	0.004	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	96	0	0	69	43	38.39	-	-	-	T	133948004	C	T	133948004	4	4	749	1	0	0	0	0	0	1	0	0	15908	528	19	1	5034	1	TG	8	133948004	Nonsense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09	13844546	133948004	12416018	13	65890										
C9orf114	0	genome.wustl.edu	37	chr9	131587072	131587072	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	aggcaggaagccagtcggacGgtgtagccccagtagagacc	15	11	0	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	9	131587072	131587072	G	A	SNP	C9orf114	ENST00000361256	human	ensembl	69_37n	-1	known	silent	c.789	p.T263	0.014	pfam_Put_MeTrfase	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold-like	-	no_errors	C9orf114	HGNC	ENSG00000198917	129	0	0	84	59	41.26	-	-	-	A	131587072	G	A	131587072	2	1	749	1	0	0	0	0	0	0	0	1	2474	1103	39	1		1	C9orf114	9	131587072	Silent	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		131587072	9626359	14	65891										
MSRB2	0	genome.wustl.edu	37	chr10	23393167	23393167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gtcacaagagaaaagggaacGgaaccggtaagctaagctgg	14	7	1	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	10	23393167	23393167	G	A	SNP	MSRB2	ENST00000472663	human	ensembl	69_37n	1	known	missense	c.95	p.R32Q	0.563	pfam_Methionine_sulphoxide_MsrB,superfamily_Mss4-like	pfam_Methionine_sulphoxide_MsrB,superfamily_Mss4-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MSRB2	HGNC	ENSG00000148450	76	0	0	71	41	36.61	-	-	-	A	23393167	G	A	23393167	3	1	749	1	0	0	0	0	1	0	0	0	9960	1103	39	1	219	1	MSRB2	10	23393167	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		23393167	112141580	15	65892										
NRXN2	0	genome.wustl.edu	37	chr11	64435947	64435947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gcccatgaagttgttgctgaCgggcgagcccggcaggtcag	16	11	1	2			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	11	64435947	64435947	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.1327	p.V443I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	53	0	0	49	31	38.75	-	-	-	T	64435947	C	T	64435947	3	4	749	1	0	0	0	0	1	0	0	0	10739	536	19	1	4144	1	NRXN2	11	64435947	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09		64435947	70570569	16	65893										
FREM2	0	genome.wustl.edu	37	chr13	39261792	39261792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gcaggtgcagcccggggaccGctgcgcggtttcggtactag	17	12	0	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	13	39261792	39261792	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.311	p.R104H	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	17	0	0	11	13	54.17	-	-	-	A	39261792	G	A	39261792	3	1	749	1	0	0	0	0	1	0	0	0	6094	1087	38	1	313	1	FREM2	13	39261792	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		39261792	75908086	17	65894										
MEX3C	0	genome.wustl.edu	37	chr18	48702727	48702727	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gtatatatatatagttaagaGtgaatttggattgcctgagt	10	2	0	3			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	18	48702727	48702727	G	A	SNP	MEX3C	ENST00000406189	human	ensembl	69_37n	-1	known	silent	c.1974	p.H658	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	26	0	0	15	13	46.43	-	-	-	A	48702727	G	A	48702727	2	1	749	1	0	0	0	0	0	0	0	1	9582	1020	36	4		4	MEX3C	18	48702727	Silent	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09		48702727	29374521	18	65895										
ZCCHC2	0	genome.wustl.edu	37	chr18	60191460	60191460	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gctcttcaccatggcctcgcTgcacccggctttctccttcc	7	19	3	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	18	60191460	60191460	T	A	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	missense	c.803	p.L268Q	0.998	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	11	0	0	8	6	42.86	-	-	-	A	60191460	T	A	60191460	3	1	749	1	0	0	0	0	1	0	0	0	17683	1580	55	5	805	5	ZCCHC2	18	60191460	Missense_Mutation	SNP	T	TCGA-E2-A10E-01A-21D-A10M-09	11488733	60191460	17885788	19	65896										
MCOLN1	0	genome.wustl.edu	37	chr19	7591479	7591479	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	gctgtaccaggccatcttccAtgctgtggaccaggtgctgg	13	12	1	0			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	19	7591479	7591479	A	T	SNP	MCOLN1	ENST00000264079	human	ensembl	69_37n	1	known	missense	c.392	p.H131L	0.123	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674	78	0	0	41	41	50	-	-	-	T	7591479	A	T	7591479	3	4	749	1	0	0	0	0	1	0	0	0	9466	217	8	5	402	5	MCOLN1	19	7591479	Missense_Mutation	SNP	A	TCGA-E2-A10E-01A-21D-A10M-09		7591479	51537504	20	65897										
GRIN2D	0	genome.wustl.edu	37	chr19	48908478	48908478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ctggcgggatgacctggctcGgcgagtggcagctggcgtgg	20	10	0	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	19	48908478	48908478	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	missense	c.953	p.R318Q	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	24	0	0	14	11	44	-	-	-	A	48908478	G	A	48908478	3	1	749	1	0	0	0	0	1	0	0	0	6833	1116	39	1	959	1	GRIN2D	19	48908478	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09	41316999	48908478	10220505	21	65898										
PIGA	0	genome.wustl.edu	37	chrX	15339870	15339870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	tttgtccattggcaacacagCttccactgatacccggtcat	7	13	1	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	X	15339870	15339870	C	T	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.1213	p.A405T	0.876	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	60	0	0	57	43	43	-	-	-	T	15339870	C	T	15339870	3	4	749	1	0	0	0	0	1	0	0	0	11958	797	28	4	245	4	PIGA	23	15339870	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09		15339870	139930690	22	65899										
PRICKLE3	0	genome.wustl.edu	37	chrX	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-													0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	agaaataggttcccacctgaGtgtgtgtgtgtgtgtgagca							TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	69_37n	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	24	0	0	21	4	16	-	-	-	-	49040117	GT	-	49040116	7	5	749	1	0	1	0	1	0	0	0	0	12569	1044	36	0		0	PRICKLE3	23	49040116	Frame_Shift_Del	DEL	GT	TCGA-E2-A10E-01A-21D-A10M-09	33700246	49040116	106230444	23	65900										
NHSL2	0	genome.wustl.edu	37	chrX	71359229	71359229	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	ccttggaacatcaaggacatCactcgtcccacccagatgct	7	15	2	1			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	X	71359229	71359229	C	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.1831	p.H611Y	0.410	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	81	0	0	75	46	38.02	-	-	-	T	71359229	C	T	71359229	3	4	749	1	0	0	0	0	1	0	0	0	10484	826	29	2	1853	2	NHSL2	23	71359229	Missense_Mutation	SNP	C	TCGA-E2-A10E-01A-21D-A10M-09	22319113	71359229	83911331	24	65901										
PLS3	0	genome.wustl.edu	37	chrX	114883857	114883857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.08	2	0.957008104689917	0.826797385620915	3.72058823529412	0.465073529411765	1	1	0	actgtgtttgcatgtttgatGggcaggggaatgaagagagt	16	3	0	3			TCGA-E2-A10E-01A-21D-A10M-09	TCGA-E2-A10E-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1bb66f02-3977-4ab2-8800-beb75513385b	d81fe1bd-0628-4d43-bcd3-81ac3e939331	X	114883857	114883857	G	A	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	missense	c.1869	p.M623I	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	146	0	0	119	38	24.2	-	-	-	A	114883857	G	A	114883857	3	1	749	1	0	0	0	0	1	0	0	0	12182	1348	47	4	1927	4	PLS3	23	114883857	Missense_Mutation	SNP	G	TCGA-E2-A10E-01A-21D-A10M-09	43524628	114883857	40386703	25	65902										
KLHL21	0	genome.wustl.edu	37	chr1	6659504	6659504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gtcatagagccgggagccatCggacccacctgccaggacgc	13	15	1	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	1	6659504	6659504	C	T	SNP	KLHL21	ENST00000377658	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344N	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413	17	0	0	40	8	16.67	-	-	-	T	6659504	C	T	6659504	3	4	750	1	0	0	0	0	1	0	0	0	8429	884	31	1	775	1	KLHL21	1	6659504	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		6659504	242591117	1	65903										
RLF	0	genome.wustl.edu	37	chr1	40705088	40705088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gcattgtgaggcattacaaaCgcactcatcagatgagtagt	10	8	2	3			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	1	40705088	40705088	C	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.4714	p.R1572C	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	64	0	0	51	23	31.08	-	-	-	T	40705088	C	T	40705088	3	4	750	1	0	0	0	0	1	0	0	0	13475	536	19	1	4744	1	RLF	1	40705088	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09	34045584	40705088	208545533	2	65904										
CD1B	0	genome.wustl.edu	37	chr1	158299878	158299878	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	agcttactatggcacctccaGaatgtagctcacagcctgct	8	13	1	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	1	158299878	158299878	G	C	SNP	CD1B	ENST00000368168	human	ensembl	69_37n	-1	known	missense	c.371	p.S124C	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1B	HGNC	ENSG00000158485	65	0	0	81	23	22.12	-	-	-	C	158299878	G	C	158299878	3	2	750	1	0	0	0	0	1	0	0	0	3004	942	33	2	646	2	CD1B	1	158299878	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	117594790	158299878	90950743	3	65905										
SF3B1	0	genome.wustl.edu	37	chr2	198266493	198266493	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	acaatttttttcatttcctcAtcaggagactggaattctcg	6	9	4	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	2	198266493	198266493	A	T	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2343	p.D781E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	353	0	0	179	43	19.37	-	-	-	T	198266493	A	T	198266493	3	4	750	1	0	0	0	0	1	0	0	0	14237	214	8	5	1611	5	SF3B1	2	198266493	Missense_Mutation	SNP	A	TCGA-E2-A10F-01A-11D-A10M-09		198266493	44932880	4	65906										
CSRNP1	0	genome.wustl.edu	37	chr3	39185716	39185716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	cacaatcctcccgggattggCgcagtgcctgcagctcccgc	11	17	0	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	3	39185716	39185716	C	T	SNP	CSRNP1	ENST00000273153	human	ensembl	69_37n	-1	known	missense	c.692	p.R231H	1.000	prints_Cys/Ser-rich_nuc_prot	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655	16	0	0	34	18	34.62	-	-	-	T	39185716	C	T	39185716	3	4	750	1	0	0	0	0	1	0	0	0	3995	768	27	1	1085	1	CSRNP1	3	39185716	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		39185716	158836714	5	65907										
CELSR3	0	genome.wustl.edu	37	chr3	48694417	48694417	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	acgttgtcgtcgaagggcagTacgtcgagcagggagcgagc	17	9	0	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	3	48694417	48694417	T	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	silent	c.4113	p.V1371	1.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	8	0	0	23	8	25.81	-	-	-	C	48694417	T	C	48694417	2	2	750	1	0	0	0	0	0	0	0	1	3252	1625	57	5		5	CELSR3	3	48694417	Silent	SNP	T	TCGA-E2-A10F-01A-11D-A10M-09	9508701	48694417	149328013	6	65908										
STAG1	0	genome.wustl.edu	37	chr3	136088052	136088052	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	tggattgaacaccaaaggctGaaggccctctctgccacctg	10	13	1	2			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	3	136088052	136088052	G	A	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	nonsense	c.2443	p.Q815*	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	112	0	0	88	45	33.83	-	-	-	A	136088052	G	A	136088052	4	1	750	1	0	0	0	0	0	1	0	0	15333	1299	45	2	1377	2	STAG1	3	136088052	Nonsense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	87393635	136088052	61934378	7	65909										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	125	0	0	116	30	20.55	-	-	-	A	178938934	G	A	178938934	3	1	750	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	42850882	178938934	19083496	8	65910										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	118	0	0	104	35	25.18	-	-	-	G	178952085	A	G	178952085	3	3	750	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A10F-01A-11D-A10M-09	13151	178952085	19070345	9	65911										
MARVELD2	0	genome.wustl.edu	37	chr5	68728474	68728474	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	tccccccaggccacattcctAaacctatcgtgatgcccgac	6	18	0	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	5	68728474	68728474	A	G	SNP	MARVELD2	ENST00000325631	human	ensembl	69_37n	1	known	missense	c.1303	p.K435E	0.991	NULL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_MARVEL-like_dom	-	no_errors	MARVELD2	HGNC	ENSG00000152939	76	0	0	91	18	16.51	-	-	-	G	68728474	A	G	68728474	3	3	750	1	0	0	0	0	1	0	0	0	9389	363	13	5	1313	5	MARVELD2	5	68728474	Missense_Mutation	SNP	A	TCGA-E2-A10F-01A-11D-A10M-09		68728474	112186786	10	65912										
PCDHB7	0	genome.wustl.edu	37	chr5	140553401	140553401	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	aagacggcggcgggctttctGgaaaatgcactgtagtggtt	15	7	1	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	5	140553401	140553401	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.985	p.G329R	0.008	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	51	0	0	56	19	25.33	-	-	-	A	140553401	G	A	140553401	3	1	750	1	0	0	0	0	1	0	0	0	11620	1349	47	4	987	4	PCDHB7	5	140553401	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	71824927	140553401	40361859	11	65913										
ETV7	0	genome.wustl.edu	37	chr6	36334453	36334453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	tttctggcctcttgtccttgAactctattctgtcctgctcc	6	14	4	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	6	36334453	36334453	A	G	SNP	ETV7	ENST00000340181	human	ensembl	69_37n	-1	known	missense	c.995	p.F332S	0.891	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV7	HGNC	ENSG00000010030	71	0	0	146	48	24.62	-	-	-	G	36334453	A	G	36334453	3	3	750	1	0	0	0	0	1	0	0	0	5321	246	9	5	34	5	ETV7	6	36334453	Missense_Mutation	SNP	A	TCGA-E2-A10F-01A-11D-A10M-09		36334453	134780614	12	65914										
CCIN	0	genome.wustl.edu	37	chr9	36169514	36169514	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	ggcaccatgaaattggaattCacggagaaaaactacaatag	9	7	1	2			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	9	36169514	36169514	C	A	SNP	CCIN	ENST00000335119	human	ensembl	69_37n	1	known	missense	c.15	p.F5L	1.000	superfamily_BTB/POZ_fold	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972	56	0	0	57	27	32.14	-	-	-	A	36169514	C	A	36169514	3	1	750	1	0	0	0	0	1	0	0	0	2905	825	29	2	17	2	CCIN	9	36169514	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		36169514	105043917	13	65915										
AGAP7	0	genome.wustl.edu	37	chr10	51464656	51464656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	agatggagcgccgtgcagccGtctccctccccacaggtctc	11	17	2	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	10	51464656	51464656	G	C	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	missense	c.1800	p.D600E	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	13	0	0	29	12	29.27	-	-	-	C	51464656	G	C	51464656	3	2	750	1	0	0	0	0	1	0	0	0	373	1136	40	3	195	3	AGAP7	10	51464656	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09		51464656	84070091	14	65916										
REEP3	0	genome.wustl.edu	37	chr10	65380602	65380602	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gggtcactaaaatacaaagtGaagaaacgaccacaagtgta	9	7	1	2			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	10	65380602	65380602	G	T	SNP	REEP3	ENST00000373758	human	ensembl	69_37n	1	known	silent	c.741	p.V247	1.000	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP3	HGNC	ENSG00000165476	187	0	0	155	37	19.27	-	-	-	T	65380602	G	T	65380602	2	4	750	1	0	0	0	0	0	0	0	1	13289	1277	45	2		2	REEP3	10	65380602	Silent	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	13915946	65380602	70154145	15	65917										
ODZ4	0	genome.wustl.edu	37	chr11	78775887	78775887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gtgtgctccggccccacagaCgcacggggtgctcaggggac	16	14	1	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	11	78775887	78775887	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.389	p.R130H	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	14	0	0	14	5	26.32	-	-	-	T	78775887	C	T	78775887	3	4	750	1	0	0	0	0	1	0	0	0	10910	536	19	1	8036	1	ODZ4	11	78775887	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		78775887	56230629	16	65918										
GLB1L3	0	genome.wustl.edu	37	chr11	134179638	134179638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	acatatttcgggaagcactcGggcattgtcaccagctatgg	11	10	1	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	11	134179638	134179638	G	A	SNP	GLB1L3	ENST00000455971	human	ensembl	69_37n	1	known	missense	c.134	p.R45Q	0.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLB1L3	HGNC	ENSG00000166105	113	0	0	119	36	23.23	-	-	-	A	134179638	G	A	134179638	3	1	750	1	0	0	0	0	1	0	0	0	6482	1103	39	1	1122	1	GLB1L3	11	134179638	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	55403751	134179638	826878	17	65919										
CAND1	0	genome.wustl.edu	37	chr12	67696173	67696173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	cgtgcagctgcgaagtgcttGgatgctgtagttagcacaag	14	8	0	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	12	67696173	67696173	G	A	SNP	CAND1	ENST00000299218	human	ensembl	69_37n	1	known	silent	c.1071	p.L357	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	119	0	0	144	48	25	-	-	-	A	67696173	G	A	67696173	2	1	750	1	0	0	0	0	0	0	0	1	2640	1339	47	4		4	CAND1	12	67696173	Silent	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09		67696173	66155722	18	65920										
CDH1	0	genome.wustl.edu	37	chr16	68845685	68845686	+	Frame_Shift_Ins	INS	-	-	T													0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	cctcagccaagatcctgagcINStccctgacaaaaatatgttc							TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	16	68845685	68845686	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.931_932	p.D313fs	0.000:0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	55	0	0	57	28	32.94	-	-	-	T	68845686	-	T	68845685	7	5	750	1	0	1	1	0	0	0	0	0	3124	797	28	0	957	0	CDH1	16	68845685	Frame_Shift_Ins	INS	-	TCGA-E2-A10F-01A-11D-A10M-09		68845685	21509068	19	65921										
SUPT6H	0	genome.wustl.edu	37	chr17	27014157	27014157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gacaggccgtctccctggccCggcgcatccaggaccctctg	12	18	2	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	17	27014157	27014157	C	T	SNP	SUPT6H	ENST00000314616	human	ensembl	69_37n	1	known	missense	c.2752	p.R918W	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	32	0	0	49	25	33.78	-	-	-	T	27014157	C	T	27014157	3	4	750	1	0	0	0	0	1	0	0	0	15491	643	23	1	2834	1	SUPT6H	17	27014157	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		27014157	54181053	20	65922										
ATP8B3	0	genome.wustl.edu	37	chr19	1802626	1802626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	ggtgcatccgactgttaggcGcctcacacgtcactgtgcct	11	14	2	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	19	1802626	1802626	G	A	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.923	p.A308V	0.888	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	53	0	0	87	32	26.67	-	-	-	A	1802626	G	A	1802626	3	1	750	1	0	0	0	0	1	0	0	0	1200	1087	38	1	3103	1	ATP8B3	19	1802626	Missense_Mutation	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09		1802626	57326357	21	65923										
ZNF99	0	genome.wustl.edu	37	chr19	22940742	22940742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gtgtgaggaccacttaaaagCtttaccacattcttcacatt	6	10	2	1			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	19	22940742	22940742	C	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1696	p.A566S	0.824	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	75	0	0	56	30	34.88	-	-	-	A	22940742	C	A	22940742	3	1	750	1	0	0	0	0	1	0	0	0	18297	797	28	4	1428	4	ZNF99	19	22940742	Missense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09	21138116	22940742	36188241	22	65924										
PHACTR3	0	genome.wustl.edu	37	chr20	58342410	58342410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	cccccactgctgcccactccGccacccaaggcaagctccaa	6	22	0	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	20	58342410	58342410	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	silent	c.711	p.P237	0.667	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	19	0	0	14	4	22.22	-	-	-	A	58342410	G	A	58342410	2	1	750	1	0	0	0	0	0	0	0	1	11885	1074	38	1		1	PHACTR3	20	58342410	Silent	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09		58342410	4683110	23	65925										
NRK	0	genome.wustl.edu	37	chrX	105152945	105152945	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	ggcaggctcaggcacctcaaCgactacaaggggcagctcgg	14	13	2	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	X	105152945	105152945	C	T	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	nonsense	c.1315	p.R439*	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	11	0	0	46	12	20.69	-	-	-	T	105152945	C	T	105152945	4	4	750	1	0	0	0	0	0	1	0	0	10728	528	19	1	1362	1	NRK	23	105152945	Nonsense_Mutation	SNP	C	TCGA-E2-A10F-01A-11D-A10M-09		105152945	50117615	24	65926										
FLNA	0	genome.wustl.edu	37	chrX	153599398	153599398	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.539836213713331	1.82477678571429	4.86607142857143	1.39030612244898	1	1	0	gcgataagccgcagcccgtcGctcaggtccgtctgcaggtt	13	14	2	0			TCGA-E2-A10F-01A-11D-A10M-09	TCGA-E2-A10F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	530b7e22-e70a-46ef-a0e8-bf2ef814850a	2b190b7e-7bb6-46df-8e67-eef219faebd6	X	153599398	153599398	G	A	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.216	p.S72	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	12	0	0	68	21	23.6	-	-	-	A	153599398	G	A	153599398	2	1	750	1	0	0	0	0	0	0	0	1	5979	1078	38	1		1	FLNA	23	153599398	Silent	SNP	G	TCGA-E2-A10F-01A-11D-A10M-09	48446453	153599398	1671162	25	65927										
PLEKHN1	0	genome.wustl.edu	37	chr1	906108	906108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tgagtgtctgcccgctcgagGggtcccgagagcacgccttc	14	14	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	906108	906108	G	T	SNP	PLEKHN1	ENST00000379409	human	ensembl	69_37n	1	known	missense	c.454	p.G152W	0.379	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PLEKHN1	HGNC	ENSG00000187583	36	0	0	37	16	30.19	-	-	-	T	906108	G	T	906108	3	4	751	1	0	0	0	0	1	0	0	0	12157	1232	43	4	472	4	PLEKHN1	1	906108	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		906108	248344513	1	65928										
CSMD2	0	genome.wustl.edu	37	chr1	34554791	34554791	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gcagttggaacgtgcagttcTggcctgggaaagagaaatgg	16	6	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	34554791	34554791	T	C	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.191	p.Q64R	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	225	1	0.44	155	21	11.8	-	-	-	C	34554791	T	C	34554791	3	2	751	1	0	0	0	0	1	0	0	0	3977	1580	55	5	10664	5	CSMD2	1	34554791	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09	33648683	34554791	214695830	2	65929										
RIMKLA	0	genome.wustl.edu	37	chr1	42875811	42875811	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gggccaggtcataggctctaTgcttcgctgctccactgatg	12	12	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	42875811	42875811	T	C	SNP	RIMKLA	ENST00000431473	human	ensembl	69_37n	1	known	missense	c.638	p.M213T	1.000	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181	326	0	0	335	42	11.14	-	-	-	C	42875811	T	C	42875811	3	2	751	1	0	0	0	0	1	0	0	0	13451	1464	51	5	652	5	RIMKLA	1	42875811	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09	8321020	42875811	206374810	3	65930										
SLC5A9	0	genome.wustl.edu	37	chr1	48699331	48699331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	attacttcttccacagacgaGgtgggctgcgtggaccctga	12	11	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	48699331	48699331	G	A	SNP	SLC5A9	ENST00000425816	human	ensembl	69_37n	1	known	missense	c.832	p.G278S	0.992	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	267	0	0	224	53	19.13	-	-	-	A	48699331	G	A	48699331	3	1	751	1	0	0	0	0	1	0	0	0	14761	991	35	4	1151	4	SLC5A9	1	48699331	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	5823520	48699331	200551290	4	65931										
CTSS	0	genome.wustl.edu	37	chr1	150722597	150722597	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ccataaggaagttcagtgtaCtttgaacatgtggcagcacg	11	8	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	150722597	150722597	C	A	SNP	CTSS	ENST00000368985	human	ensembl	69_37n	-1	known	missense	c.678	p.K226N	0.946	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSS	HGNC	ENSG00000163131	279	0	0	247	55	18.21	-	-	-	A	150722597	C	A	150722597	3	1	751	1	0	0	0	0	1	0	0	0	4073	564	20	4	329	4	CTSS	1	150722597	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	102023266	150722597	98528024	5	65932										
PIP5K1A	0	genome.wustl.edu	37	chr1	151209081	151209081	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tacagcctcttgatgtcaatCcataatatagatcatgcaca	5	10	3	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	151209081	151209081	C	T	SNP	PIP5K1A	ENST00000368888	human	ensembl	69_37n	1	known	silent	c.987	p.I329	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	125	0	0	104	22	17.46	-	-	-	T	151209081	C	T	151209081	2	4	751	1	0	0	0	0	0	0	0	1	12013	845	30	2		2	PIP5K1A	1	151209081	Silent	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	486484	151209081	98041540	6	65933										
SPRR3	0	genome.wustl.edu	37	chr1	152975898	152975898	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ccaggtgccatcaaagttccTgagcaaggatacaccaaagt	9	11	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	1	152975898	152975898	T	G	SNP	SPRR3	ENST00000295367	human	ensembl	69_37n	1	known	silent	c.402	p.P134	0.897	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR3	HGNC	ENSG00000163209	282	0	0	213	24	10.13	-	-	-	G	152975898	T	G	152975898	2	3	751	1	0	0	0	0	0	0	0	1	15194	1567	55	5		5	SPRR3	1	152975898	Silent	SNP	T	TCGA-E2-A14N-01A-31D-A135-09	1766817	152975898	96274723	7	65934										
XPO1	0	genome.wustl.edu	37	chr2	61710129	61710129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tctgtcacaacagaaaagatAtgctggagaatatcacaaaa	7	7	3	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	2	61710129	61710129	A	G	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	silent	c.2775	p.H925	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	254	0	0	221	50	18.45	-	-	-	G	61710129	A	G	61710129	2	3	751	1	0	0	0	0	0	0	0	1	17542	446	16	5		5	XPO1	2	61710129	Silent	SNP	A	TCGA-E2-A14N-01A-31D-A135-09		61710129	181489244	8	65935										
CEP68	0	genome.wustl.edu	37	chr2	65298808	65298808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cccaggttccgcagctcagcCttccagctgcagcatctctg	9	17	2	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	2	65298808	65298808	C	T	SNP	CEP68	ENST00000377990	human	ensembl	69_37n	1	known	missense	c.578	p.P193L	0.000	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523	82	0	0	62	9	12.5	-	-	-	T	65298808	C	T	65298808	3	4	751	1	0	0	0	0	1	0	0	0	3287	681	24	4	584	4	CEP68	2	65298808	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	3588679	65298808	177900565	9	65936										
FAM171B	0	genome.wustl.edu	37	chr2	187626606	187626606	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gtgatgctcaagatgaaaagAggtatctcacaggtaatgag	12	5	2	5			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	2	187626606	187626606	A	T	SNP	FAM171B	ENST00000304698	human	ensembl	69_37n	1	known	missense	c.1537	p.R513W	0.944	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369	293	0	0	227	92	28.75	-	-	-	T	187626606	A	T	187626606	3	4	751	1	0	0	0	0	1	0	0	0	5531	295	11	5	1567	5	FAM171B	2	187626606	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09	122327798	187626606	55572767	10	65937										
UGT2A1	0	genome.wustl.edu	37	chr4	70455314	70455314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gaagactgctcgatccagggGctttacaggttgatcatggt	13	8	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	4	70455314	70455314	G	T	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	missense	c.1387	p.P463T	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	364	1	0.27	309	65	17.38	-	-	-	T	70455314	G	T	70455314	3	4	751	1	0	0	0	0	1	0	0	0	17050	1203	42	4	227	4	UGT2A1	4	70455314	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		70455314	120698962	11	65938										
HPSE	0	genome.wustl.edu	37	chr4	84234382	84234382	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cttaataacgcatttaggccAaagatcaagtccagtcctga	7	10	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	4	84234382	84234382	A	T	SNP	HPSE	ENST00000311412	human	ensembl	69_37n	-1	known	missense	c.558	p.F186L	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083	234	0	0	212	53	20	-	-	-	T	84234382	A	T	84234382	3	4	751	1	0	0	0	0	1	0	0	0	7395	127	5	5	1109	5	HPSE	4	84234382	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09	13779068	84234382	106919894	12	65939										
TTC29	0	genome.wustl.edu	37	chr4	147724636	147724636	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tggatcaggttcaatgttacCtctgctctccttccatgaca	7	12	4	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	4	147724636	147724636	C	G	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	missense	c.1381	p.G461R	0.983	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	385	0	0	312	44	12.36	-	-	-	G	147724636	C	G	147724636	3	3	751	1	0	0	0	0	1	0	0	0	16793	681	24	4	136	4	TTC29	4	147724636	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	63490254	147724636	43429640	13	65940										
KDM3B	0	genome.wustl.edu	37	chr5	137771360	137771360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	atgcggttggcaccctcaagGctcatgaatccaaactggca	10	12	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	5	137771360	137771360	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.5257	p.A1753T	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	255	0	0	163	48	22.75	-	-	-	A	137771360	G	A	137771360	3	1	751	1	0	0	0	0	1	0	0	0	8181	1203	42	4	5351	4	KDM3B	5	137771360	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		137771360	43143900	14	65941										
CCDC69	0	genome.wustl.edu	37	chr5	150566946	150566946	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	acacgacccagcccctctcaCctgctgggtagaactggcct	9	17	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	5	150566946	150566946	C	A	SNP	CCDC69	ENST00000355417	human	ensembl	69_37n	-1	known	splice_site	c.393+1	e5+1	1.000	-	-	-	no_errors	CCDC69	HGNC	ENSG00000198624	254	1	0.39	138	41	22.78	-	-	-	A	150566946	C	A	150566946	5	1	751	1	0	0	0	0	0	0	1	0	2868	521	18	4	516	4	CCDC69	5	150566946	Splice_Site	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	12795586	150566946	30348314	15	65942										
SSR1	0	genome.wustl.edu	37	chr6	7301667	7301667	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gcactacagtgttcagaggaAgagctgtgaaattctggata	12	6	2	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	6	7301667	7301667	A	G	SNP	SSR1	ENST00000244763	human	ensembl	69_37n	-1	known	missense	c.419	p.L140P	1.000	pfam_TRAP_alpha	pfam_TRAP_alpha	-	no_errors	SSR1	HGNC	ENSG00000124783	274	0	0	244	40	14.08	-	-	-	G	7301667	A	G	7301667	3	3	751	1	0	0	0	0	1	0	0	0	15281	72	3	5	461	5	SSR1	6	7301667	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09		7301667	163813400	16	65943										
SYCP2L	0	genome.wustl.edu	37	chr6	10935310	10935310	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ggctaagcttctatcaccatCagagaaagaaatacccgagc	8	11	3	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	6	10935310	10935310	C	A	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	nonsense	c.1703	p.S568*	0.000	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	319	0	0	250	88	26.04	-	-	-	A	10935310	C	A	10935310	4	1	751	1	0	0	0	0	0	1	0	0	15525	838	29	2	1785	2	SYCP2L	6	10935310	Nonsense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	3633643	10935310	160179757	17	65944										
RSPH3	0	genome.wustl.edu	37	chr6	159401878	159401878	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	agacgggagaaggtcagccaGgtaacgctgtgcaaatgctc	14	9	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	6	159401878	159401878	G	C	SNP	RSPH3	ENST00000252655	human	ensembl	69_37n	-1	known	missense	c.1213	p.L405V	1.000	pfam_Radial_spoke_3	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363	504	0	0	366	59	13.85	-	-	-	C	159401878	G	C	159401878	3	2	751	1	0	0	0	0	1	0	0	0	13791	991	35	4	481	4	RSPH3	6	159401878	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	148466568	159401878	11713189	18	65945										
AKAP9	0	genome.wustl.edu	37	chr7	91632139	91632139	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ctgaacaattgaaacagaaaCatggtgagattagttttcta	8	5	1	4			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	7	91632139	91632139	C	G	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	missense	c.2944	p.H982D	0.925	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	108	0	0	105	17	13.93	-	-	-	G	91632139	C	G	91632139	3	3	751	1	0	0	0	0	1	0	0	0	459	478	17	4	2938	4	AKAP9	7	91632139	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09		91632139	67506524	19	65946										
SAMD9	0	genome.wustl.edu	37	chr7	92733023	92733023	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tcttcaaaatcatcaacaagGagtagtacaggtacgtattc	7	8	4	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	7	92733023	92733023	G	T	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	silent	c.2388	p.L796	0.993	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	201	0	0	194	34	14.85	-	-	-	T	92733023	G	T	92733023	2	4	751	1	0	0	0	0	0	0	0	1	13912	1161	41	2		2	SAMD9	7	92733023	Silent	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	1100884	92733023	66405640	20	65947										
MGAM	0	genome.wustl.edu	37	chr7	141705436	141705436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ttctaattgtgcttttagccAaagagtcactgaaatcaaca	6	8	3	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	7	141705436	141705436	A	G	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.106	p.K36E	0.014	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	538	1	0.19	469	91	16.22	-	-	-	G	141705436	A	G	141705436	3	3	751	1	0	0	0	0	1	0	0	0	9612	131	5	5	108	5	MGAM	7	141705436	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09	48972413	141705436	17433227	21	65948										
HTR5A	0	genome.wustl.edu	37	chr7	154862779	154862779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ggtggcggcgacgttcgcctGgaacctgctggtgctggcga	18	11	0	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	7	154862779	154862779	G	T	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	1	known	missense	c.170	p.W57L	1.000	pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	124	0	0	58	9	13.43	-	-	-	T	154862779	G	T	154862779	3	4	751	1	0	0	0	0	1	0	0	0	7504	1357	47	4	172	4	HTR5A	7	154862779	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	13157343	154862779	4275884	22	65949										
SH3GL2	0	genome.wustl.edu	37	chr9	17795652	17795652	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tcacactcactaaccaaattGatgagaactggtatgagggg	10	8	2	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	9	17795652	17795652	G	A	SNP	SH3GL2	ENST00000380607	human	ensembl	69_37n	1	known	missense	c.970	p.D324N	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295	407	0	0	370	56	13.15	-	-	-	A	17795652	G	A	17795652	3	1	751	1	0	0	0	0	1	0	0	0	14340	1290	45	2	1004	2	SH3GL2	9	17795652	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		17795652	123417779	23	65950										
MLLT3	0	genome.wustl.edu	37	chr9	20620668	20620668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cctacctctttttggcctagGaaagctttcgtgcaagtgga	10	10	1	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	9	20620668	20620668	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	69_37n	-1	known	missense	c.178	p.P60S	1.000	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843	148	0	0	118	19	13.77	-	-	-	A	20620668	G	A	20620668	3	1	751	1	0	0	0	0	1	0	0	0	9699	1174	41	2	1568	2	MLLT3	9	20620668	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	2825016	20620668	120592763	24	65951										
PTCH1	0	genome.wustl.edu	37	chr9	98221930	98221930	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ggctttgtcgtggacccattCtggtcggtgtggccggatgt	16	9	1	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	9	98221930	98221930	C	G	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.2839	p.E947Q	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	398	0	0	241	131	35.22	-	-	-	G	98221930	C	G	98221930	3	3	751	1	0	0	0	0	1	0	0	0	12810	922	32	2	1532	2	PTCH1	9	98221930	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	77601262	98221930	42991501	25	65952										
RXRA	0	genome.wustl.edu	37	chr9	137309062	137309062	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gagaatgaggtggagtcgacCagcagcgccaacgaggacat	15	9	0	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	9	137309062	137309062	C	T	SNP	RXRA	ENST00000481739	human	ensembl	69_37n	1	known	silent	c.669	p.T223	0.959	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	70	0	0	30	13	30.23	-	-	-	T	137309062	C	T	137309062	2	4	751	1	0	0	0	0	0	0	0	1	13849	581	21	4		4	RXRA	9	137309062	Silent	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	39087132	137309062	3904369	26	65953										
CCDC3	0	genome.wustl.edu	37	chr10	13043199	13043199	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cggcgccgccgggctcacctGaggaagaagaaataggagta	15	10	1	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	10	13043199	13043199	G	A	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	silent	c.372	p.L124	1.000	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	8	0	0	7	4	36.36	-	-	-	A	13043199	G	A	13043199	2	1	751	1	0	0	0	0	0	0	0	1	2830	1277	45	2		2	CCDC3	10	13043199	Silent	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		13043199	122491548	27	65954										
THNSL1	0	genome.wustl.edu	37	chr10	25313398	25313398	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	agaatggagtaagtgattttCaaaaagcacaaataattggc	9	4	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	10	25313398	25313398	C	T	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	nonsense	c.1246	p.Q416*	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	536	0	0	425	95	18.27	-	-	-	T	25313398	C	T	25313398	4	4	751	1	0	0	0	0	0	1	0	0	15957	827	29	2	1248	2	THNSL1	10	25313398	Nonsense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	12270199	25313398	110221349	28	65955										
ABI1	0	genome.wustl.edu	37	chr10	27052815	27052815	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ctatgcaatctcacctatcaCagtgctcactgggagaagtg	9	11	3	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	10	27052815	27052815	C	A	SNP	ABI1	ENST00000355394	human	ensembl	69_37n	-1	known	missense	c.898	p.V300L	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754	320	0	0	331	77	18.87	-	-	-	A	27052815	C	A	27052815	3	1	751	1	0	0	0	0	1	0	0	0	88	478	17	4	651	4	ABI1	10	27052815	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	1739417	27052815	108481932	29	65956										
PTCHD3	0	genome.wustl.edu	37	chr10	27700858	27700858	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	aagcgatgtaaagtggactaCctgccacaaaaatatactca	7	9	1	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	10	27700858	27700858	C	A	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	missense	c.1090	p.V364L	0.998	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	151	0	0	146	27	15.61	-	-	-	A	27700858	C	A	27700858	3	1	751	1	0	0	0	0	1	0	0	0	12814	521	18	4	1225	4	PTCHD3	10	27700858	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	648043	27700858	107833889	30	65957										
MRGPRX3	0	genome.wustl.edu	37	chr11	18159472	18159472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cagtgggccctgttttccagGatccacctggattggaaagt	12	10	0	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	11	18159472	18159472	G	T	SNP	MRGPRX3	ENST00000396275	human	ensembl	69_37n	1	known	missense	c.723	p.R241S	0.211	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826	388	0	0	316	73	18.77	-	-	-	T	18159472	G	T	18159472	3	4	751	1	0	0	0	0	1	0	0	0	9840	1165	41	2	725	2	MRGPRX3	11	18159472	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		18159472	116847044	31	65958										
GANAB	0	genome.wustl.edu	37	chr11	62400200	62400200	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	acacatccaaattgtagaggCgatatggctccccacccctg	8	14	0	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	11	62400200	62400200	C	G	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.899	p.R300P	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	141	0	0	82	27	24.77	-	-	-	G	62400200	C	G	62400200	3	3	751	1	0	0	0	0	1	0	0	0	6283	768	27	3	2065	3	GANAB	11	62400200	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	44240728	62400200	72606316	32	65959										
CUL5	0	genome.wustl.edu	37	chr11	107965573	107965573	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ataaaaattctgaatgctggCgcctggtcaagaagttctga	10	7	3	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	11	107965573	107965573	C	T	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	silent	c.1602	p.G534	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	116	0	0	89	35	28.23	-	-	-	T	107965573	C	T	107965573	2	4	751	1	0	0	0	0	0	0	0	1	4090	755	27	1		1	CUL5	11	107965573	Silent	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	45565373	107965573	27040943	33	65960										
RNF10	0	genome.wustl.edu	37	chr12	120995476	120995476	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tgaatgtagaccatcccattCatctaggaggtgagttcttt	9	8	3	3			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	12	120995476	120995476	C	T	SNP	RNF10	ENST00000413266	human	ensembl	69_37n	1	known	missense	c.958	p.H320Y	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	583	2	0.34	359	135	27.27	-	-	-	T	120995476	C	T	120995476	3	4	751	1	0	0	0	0	1	0	0	0	13508	826	29	2	980	2	RNF10	12	120995476	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09		120995476	12856419	34	65961										
FAM124A	0	genome.wustl.edu	37	chr13	51854669	51854669	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cgtcattccactcctttgccGagcactgctgtaccaagcca	7	16	1	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	13	51854669	51854669	G	A	SNP	FAM124A	ENST00000280057	human	ensembl	69_37n	1	known	silent	c.1026	p.P342	0.000	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	171	0	0	123	31	19.75	-	-	-	A	51854669	G	A	51854669	2	1	751	1	0	0	0	0	0	0	0	1	5465	1045	37	1		1	FAM124A	13	51854669	Silent	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		51854669	63315209	35	65962										
ATP11A	0	genome.wustl.edu	37	chr13	113488902	113488902	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	aggtttcccttctcattgcaGacttggctttacctacctaa	6	12	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	13	113488902	113488902	G	C	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	splice_site	c.1560-1	e15-1	1.000	-	-	-	no_errors	ATP11A	HGNC	ENSG00000068650	267	0	0	185	51	21.61	-	-	-	C	113488902	G	C	113488902	5	2	751	1	0	0	0	0	0	0	1	0	1123	956	33	2	1617	2	ATP11A	13	113488902	Splice_Site	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	61634233	113488902	1680976	36	65963										
F7	0	genome.wustl.edu	37	chr13	113771885	113771885	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tgtttcgacaaaatcaagaaCtggaggaacctgatcgcggt	11	8	1	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	13	113771885	113771885	C	T	SNP	F7	ENST00000375581	human	ensembl	69_37n	1	known	silent	c.780	p.N260	0.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	F7	HGNC	ENSG00000057593	258	0	0	194	24	10.96	-	-	-	T	113771885	C	T	113771885	2	4	751	1	0	0	0	0	0	0	0	1	5386	564	20	4		4	F7	13	113771885	Silent	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	282983	113771885	1397993	37	65964										
PROX2	0	genome.wustl.edu	37	chr14	75329577	75329577	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	atcctgacagggtttgggggTcattcttggagggatagggt	17	5	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	14	75329577	75329577	T	A	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.961	p.T321S	0.002	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	244	1	0.4	214	29	11.51	-	-	-	A	75329577	T	A	75329577	3	1	751	1	0	0	0	0	1	0	0	0	12642	1667	58	5	833	5	PROX2	14	75329577	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09		75329577	32019963	38	65965										
RTL1	0	genome.wustl.edu	37	chr14	101350779	101350779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ctttcatcctatcagatgctCcactgagtggatcccccctt	6	15	2	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	14	101350779	101350779	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.347	p.G116E	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	242	0	0	138	17	10.97	-	-	-	T	101350779	C	T	101350779	3	4	751	1	0	0	0	0	1	0	0	0	13810	855	30	2	3733	2	RTL1	14	101350779	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	26021202	101350779	5998761	39	65966										
MYO9A	0	genome.wustl.edu	37	chr15	72338876	72338876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tatgttcattatcttcaaagCgtcgtcttcctccatcattt	4	11	5	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	15	72338876	72338876	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.29	p.R10H	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	267	0	0	183	53	22.46	-	-	-	T	72338876	C	T	72338876	3	4	751	1	0	0	0	0	1	0	0	0	10156	768	27	1	7781	1	MYO9A	15	72338876	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09		72338876	30192516	40	65967										
IL27	0	genome.wustl.edu	37	chr16	28511052	28511052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cagcagcagcaactcccgcaCggcccgagataagacgagct	11	15	0	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	16	28511052	28511052	C	G	SNP	IL27	ENST00000356897	human	ensembl	69_37n	-1	known	missense	c.652	p.V218L	0.722	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	IL27	HGNC	ENSG00000197272	115	0	0	48	10	17.24	-	-	-	G	28511052	C	G	28511052	3	3	751	1	0	0	0	0	1	0	0	0	7734	536	19	3	83	3	IL27	16	28511052	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09		28511052	61843701	41	65968										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	373	0	0	198	67	25.28	-	-	-	A	7578263	G	A	7578263	4	1	751	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		7578263	73616947	42	65969										
BZRAP1	0	genome.wustl.edu	37	chr17	56384995	56384995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	caggatctgaccctctcggaAgggaagctcttcttctccag	10	13	5	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	17	56384995	56384995	A	C	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	missense	c.4960	p.F1654V	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	212	0	0	135	26	16.15	-	-	-	C	56384995	A	C	56384995	3	2	751	1	0	0	0	0	1	0	0	0	1586	72	3	5	645	5	BZRAP1	17	56384995	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09	48806732	56384995	24810215	43	65970										
ACOX1	0	genome.wustl.edu	37	chr17	73956312	73956312	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ataccatgacccatctctgtCtgggcataagtgccaatgat	8	11	2	2			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	17	73956312	73956312	C	G	SNP	ACOX1	ENST00000293217	human	ensembl	69_37n	-1	known	missense	c.414	p.Q138H	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533	119	0	0	100	26	20.47	-	-	-	G	73956312	C	G	73956312	3	3	751	1	0	0	0	0	1	0	0	0	158	912	32	2	1616	2	ACOX1	17	73956312	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	17571317	73956312	7238898	44	65971										
LPPR3	0	genome.wustl.edu	37	chr19	815750	815750	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gtctccacgtagggcatggaGagagtgcggtcatagcactg	15	9	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	19	815750	815750	G	A	SNP	LPPR3	ENST00000359894	human	ensembl	69_37n	-1	known	silent	c.177	p.L59	0.997	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	hsa-mir-3187	miRBase	ENSG00000129951	88	0	0	56	12	17.39	-	-	-	A	815750	G	A	815750	2	1	751	1	0	0	0	0	0	0	0	1	8992	929	33	2		2	LPPR3	19	815750	Silent	SNP	G	TCGA-E2-A14N-01A-31D-A135-09		815750	58313233	45	65972										
FAM108A1	0	genome.wustl.edu	37	chr19	1877565	1877565	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ggggaaggcgacgcgcatgcCcgaggtgagcggcgagtgca	20	10	0	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	19	1877565	1877565	C	A	SNP	FAM108A1	ENST00000250974	human	ensembl	69_37n	-1	known	missense	c.802	p.G268C	1.000	pfam_Dienelactn_hydro	pfam_Dienelactn_hydro	-	no_errors	FAM108A1	HGNC	ENSG00000129968	44	0	0	16	4	20	-	-	-	A	1877565	C	A	1877565	3	1	751	1	0	0	0	0	1	0	0	0	5431	623	22	4	291	4	FAM108A1	19	1877565	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	1061815	1877565	57251418	46	65973										
RANBP3	0	genome.wustl.edu	37	chr19	5917932	5917932	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tcctgctccacgcggctgcgCagggccaggatgcggtggtg	17	13	0	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	19	5917932	5917932	C	T	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	silent	c.1533	p.L511	1.000	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	44	0	0	29	8	21.62	-	-	-	T	5917932	C	T	5917932	2	4	751	1	0	0	0	0	0	0	0	1	13112	697	25	4		4	RANBP3	19	5917932	Silent	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	4040367	5917932	53211051	47	65974										
ZNF625	0	genome.wustl.edu	37	chr19	12256170	12256170	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	agctacagggtttttctccaGtgtgagtcctttcatggatt	10	8	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	19	12256170	12256170	G	C	SNP	ZNF625	ENST00000439556	human	ensembl	69_37n	-1	known	missense	c.1061	p.T354S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	Clone_based_vega_gene	ENSG00000257591	331	0	0	277	65	19.01	-	-	-	C	12256170	G	C	12256170	3	2	751	1	0	0	0	0	1	0	0	0	18145	1029	36	4	61	4	ZNF625	19	12256170	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	6338238	12256170	46872813	48	65975										
NUMBL	0	genome.wustl.edu	37	chr19	41173774	41173774	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gggtggcaggaacacggccaCttgggcaggtgcagcgtcaa	17	10	1	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	19	41173774	41173774	C	A	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	missense	c.1429	p.V477L	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	15	0	0	11	4	26.67	-	-	-	A	41173774	C	A	41173774	3	1	751	1	0	0	0	0	1	0	0	0	10825	565	20	4	404	4	NUMBL	19	41173774	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	28917604	41173774	17955209	49	65976										
ATRN	0	genome.wustl.edu	37	chr20	3527932	3527932	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	ttccctgctatttttacagtTttgatatgtgtccaaataac	5	8	0	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	20	3527932	3527932	T	A	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	1	known	missense	c.739	p.F247I	1.000	superfamily_CUB,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	640	0	0	341	121	26.02	-	-	-	A	3527932	T	A	3527932	3	1	751	1	0	0	0	0	1	0	0	0	1210	1855	64	5	757	5	ATRN	20	3527932	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09		3527932	59497588	50	65977										
CDK5RAP1	0	genome.wustl.edu	37	chr20	31961928	31961928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	aagcaagcctgaccccctccGcatggcctccaacacacggc	8	19	0	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	20	31961928	31961928	G	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.1240	p.R414W	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	205	0	0	147	24	14.04	-	-	-	A	31961928	G	A	31961928	3	1	751	1	0	0	0	0	1	0	0	0	3174	1086	38	1	589	1	CDK5RAP1	20	31961928	Missense_Mutation	SNP	G	TCGA-E2-A14N-01A-31D-A135-09	28433996	31961928	31063592	51	65978										
PCMTD2	0	genome.wustl.edu	37	chr20	62899355	62899355	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	gtcaggaaaatcaagacttgTccagttacgtaagtatacca	8	8	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	20	62899355	62899355	T	C	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	1	known	missense	c.698	p.V233A	1.000	NULL	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	300	0	0	210	64	23.36	-	-	-	C	62899355	T	C	62899355	3	2	751	1	0	0	0	0	1	0	0	0	11660	1667	58	5	712	5	PCMTD2	20	62899355	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09	30937427	62899355	126165	52	65979										
MYO18B	0	genome.wustl.edu	37	chr22	26423470	26423470	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	cacctgtctgactcgtcctcAtcctccggctccatcgtgtc	7	18	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	22	26423470	26423470	A	T	SNP	MYO18B	ENST00000543971	human	ensembl	69_37n	1	novel	missense	c.1379	p.H460L	0.558	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYO18B	HGNC	ENSG00000133454	141	0	0	87	39	30.95	-	-	-	T	26423470	A	T	26423470	3	4	751	1	0	0	0	0	1	0	0	0	10138	204	8	5	7696	5	MYO18B	22	26423470	Missense_Mutation	SNP	A	TCGA-E2-A14N-01A-31D-A135-09		26423470	24881096	53	65980										
GYG2	0	genome.wustl.edu	37	chrX	2774660	2774660	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tacacttacagccctgccttCaagcagtaagttctccaccc	5	16	2	0			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	X	2774660	2774660	C	G	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	1	known	missense	c.702	p.F234L	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	158	0	0	81	16	16.49	-	-	-	G	2774660	C	G	2774660	3	3	751	1	0	0	0	0	1	0	0	0	6957	825	29	2	724	2	GYG2	23	2774660	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09		2774660	152495900	54	65981										
CACNA1F	0	genome.wustl.edu	37	chrX	49065681	49065681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	tcaggggattgacgaagtatTttacaatcaagttcctggga	11	6	2	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	X	49065681	49065681	T	A	SNP	CACNA1F	ENST00000486943	human	ensembl	69_37n	-1	putative	missense	c.257	p.K86I	0.015	NULL	NULL	-	no_start_codon	CACNA1F	HGNC	ENSG00000102001	504	0	0	314	83	20.85	-	-	-	A	49065681	T	A	49065681	3	1	751	1	0	0	0	0	1	0	0	0	2568	1856	64	5		5	CACNA1F	23	49065681	Missense_Mutation	SNP	T	TCGA-E2-A14N-01A-31D-A135-09	46291021	49065681	106204879	55	65982										
MID2	0	genome.wustl.edu	37	chrX	107170052	107170052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.160714285714286	9	0.0916239842946798	2.08922155688623	2.5323897659227	1.83265048849669	1	1	0	atgtgcccccacacctgaagCgtctgggtgtcctcctggat	11	14	1	1			TCGA-E2-A14N-01A-31D-A135-09	TCGA-E2-A14N-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	00c8d151-2223-4e36-8c66-6c09e42d8777	d2ad26e4-a4a8-45de-9f85-c681a2a49f43	X	107170052	107170052	C	G	SNP	MID2	ENST00000262843	human	ensembl	69_37n	1	known	missense	c.1957	p.R653G	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561	407	0	0	273	67	19.71	-	-	-	G	107170052	C	G	107170052	3	3	751	1	0	0	0	0	1	0	0	0	9649	768	27	3	1995	3	MID2	23	107170052	Missense_Mutation	SNP	C	TCGA-E2-A14N-01A-31D-A135-09	58104371	107170052	48100508	56	65983										
NBPF1	0	genome.wustl.edu	37	chr1	16909220	16909220	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	tcccttaactgggtcagctcTcgttcctgagagtgaaccag	10	12	2	2			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	1	16909220	16909220	T	C	SNP	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	9	0	0	3	4	57.14	-	-	-	C	16909220	T	C	16909220	1	2	752	0	1	0	0	0	0	0	0	0	10264	1538	54	5		5	NBPF1	1	16909220	RNA	SNP	T	TCGA-E2-A14O-01A-31D-A10Y-09		16909220	232341401	1	65984										
OR2T2	0	genome.wustl.edu	37	chr1	248616513	248616513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ggtaccctctcctcatgaacCgcagggtttgcttattcatg	9	12	3	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	1	248616513	248616513	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	missense	c.415	p.R139C	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	210	0	0	350	72	17.06	-	-	-	T	248616513	C	T	248616513	3	4	752	1	0	0	0	0	1	0	0	0	11093	652	23	1	417	1	OR2T2	1	248616513	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	231707293	248616513	634108	2	65985										
NKTR	0	genome.wustl.edu	37	chr3	42659115	42659115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	tatgtccaaaaacatgcaaaAacttcctttgcttgtgctca	5	10	1	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	3	42659115	42659115	A	G	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.112	p.N38D	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	192	0	0	397	240	37.62	-	-	-	G	42659115	A	G	42659115	3	3	752	1	0	0	0	0	1	0	0	0	10520	14	1	5	118	5	NKTR	3	42659115	Missense_Mutation	SNP	A	TCGA-E2-A14O-01A-31D-A10Y-09		42659115	155363315	3	65986										
PLXND1	0	genome.wustl.edu	37	chr3	129289712	129289712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gtcagagacaatctggatgtCgcagcttacttggcctatct	10	10	3	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	3	129289712	129289712	C	T	SNP	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	missense	c.3667	p.D1223N	0.998	superfamily_Ig_E-set	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	95	0	0	96	71	42.51	-	-	-	T	129289712	C	T	129289712	3	4	752	1	0	0	0	0	1	0	0	0	12201	884	31	1	2182	1	PLXND1	3	129289712	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	86630597	129289712	68732718	4	65987										
PCDH7	0	genome.wustl.edu	37	chr4	30725334	30725334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gtaatgtcaggacagtagtaGctacagtgttggcaacagac	12	7	1	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	4	30725334	30725334	G	T	SNP	PCDH7	ENST00000543491	human	ensembl	69_37n	1	known	missense	c.2290	p.A764S	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	54	0	0	36	4	10	-	-	-	T	30725334	G	T	30725334	3	4	752	1	0	0	0	0	1	0	0	0	11589	971	34	4	2292	4	PCDH7	4	30725334	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		30725334	160428942	5	65988										
PLXNA4	0	genome.wustl.edu	37	chr7	131908302	131908302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ctacctcgggcagcttcactCggccttcctggaaggagcag	12	14	1	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	7	131908302	131908302	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.2081	p.R694Q	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	65	0	0	84	30	26.32	-	-	-	T	131908302	C	T	131908302	3	4	752	1	0	0	0	0	1	0	0	0	12196	884	31	1	3699	1	PLXNA4	7	131908302	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09		131908302	27230361	6	65989										
STMN4	0	genome.wustl.edu	37	chr8	27098633	27098633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ttccagggatgggtctcgccGccttggcagggaggcgttga	17	10	1	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	8	27098633	27098633	G	A	SNP	STMN4	ENST00000350889	human	ensembl	69_37n	-1	known	missense	c.337	p.R113W	1.000	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	pfam_Stathmin,superfamily_Stathmin,pirsf_Stathmin,prints_Stathmin	-	no_errors	STMN4	HGNC	ENSG00000015592	127	0	0	212	57	21.19	-	-	-	A	27098633	G	A	27098633	3	1	752	1	0	0	0	0	1	0	0	0	15402	1086	38	1	325	1	STMN4	8	27098633	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		27098633	119265389	7	65990										
ASTN2	0	genome.wustl.edu	37	chr9	119188282	119188282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	aagatagggcactgtttccaCgcggctctggatgtaggcac	13	10	1	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	9	119188282	119188282	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.3868	p.V1290M	0.996	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	94	0	0	28	84	75	-	-	-	T	119188282	C	T	119188282	3	4	752	1	0	0	0	0	1	0	0	0	1069	536	19	1	196	1	ASTN2	9	119188282	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09		119188282	22025149	8	65991										
MLLT10	0	genome.wustl.edu	37	chr10	21959565	21959565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	agctcacagctcaggtcaaaGgggaagaaagcctggtggtg	15	8	3	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	10	21959565	21959565	G	A	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.983	p.R328K	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	72	0	0	91	91	50	-	-	-	A	21959565	G	A	21959565	3	1	752	1	0	0	0	0	1	0	0	0	9697	1000	35	4	1017	4	MLLT10	10	21959565	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		21959565	113575182	9	65992										
SEMA4G	0	genome.wustl.edu	37	chr10	102732993	102732993	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gagcccgaggtgccctgttcTctctcagtgccaacgacata	10	14	2	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	10	102732993	102732993	T	G	SNP	SEMA4G	ENST00000210633	human	ensembl	69_37n	1	known	missense	c.232	p.S78A	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4G	HGNC	ENSG00000095539	42	0	0	25	24	48.98	-	-	-	G	102732993	T	G	102732993	3	3	752	1	0	0	0	0	1	0	0	0	14124	1551	54	5	238	5	SEMA4G	10	102732993	Missense_Mutation	SNP	T	TCGA-E2-A14O-01A-31D-A10Y-09	80773428	102732993	32801754	10	65993										
DHX32	0	genome.wustl.edu	37	chr10	127530353	127530353	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ttagcacttcatctacacagTcaaattcacaggacgctaag	6	11	4	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	10	127530353	127530353	T	G	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	missense	c.1502	p.D501A	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	43	0	0	93	69	42.33	-	-	-	G	127530353	T	G	127530353	3	3	752	1	0	0	0	0	1	0	0	0	4541	1667	58	5	749	5	DHX32	10	127530353	Missense_Mutation	SNP	T	TCGA-E2-A14O-01A-31D-A10Y-09	24797360	127530353	8004394	11	65994										
SYT12	0	genome.wustl.edu	37	chr11	66811295	66811295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	tcccgctgcagcccttcagtGgctggctctatttacaggac	10	14	2	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	11	66811295	66811295	G	T	SNP	SYT12	ENST00000393946	human	ensembl	69_37n	1	known	missense	c.808	p.G270C	0.998	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT12	HGNC	ENSG00000173227	71	0	0	352	49	12.22	-	-	-	T	66811295	G	T	66811295	3	4	752	1	0	0	0	0	1	0	0	0	15560	1348	47	4	822	4	SYT12	11	66811295	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		66811295	68195221	12	65995										
PITPNM1	0	genome.wustl.edu	37	chr11	67269453	67269453	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	cgccgtccgtgcccagtcatCagacagtggccctcggcccg	12	18	2	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	11	67269453	67269453	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.520	p.D174N	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	58	0	0	260	41	13.58	-	-	-	T	67269453	C	T	67269453	3	4	752	1	0	0	0	0	1	0	0	0	12024	826	29	2	3294	2	PITPNM1	11	67269453	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	458158	67269453	67737063	13	65996										
SPRYD4	0	genome.wustl.edu	37	chr12	56862936	56862936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	agcccaccaaggtggccttgAatgtggagcgcttccgggag	15	11	0	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	12	56862936	56862936	A	C	SNP	SPRYD4	ENST00000338146	human	ensembl	69_37n	1	known	missense	c.199	p.N67H	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	SPRYD4	HGNC	ENSG00000176422	23	0	0	35	18	33.96	-	-	-	C	56862936	A	C	56862936	3	2	752	1	0	0	0	0	1	0	0	0	15201	246	9	5	205	5	SPRYD4	12	56862936	Missense_Mutation	SNP	A	TCGA-E2-A14O-01A-31D-A10Y-09		56862936	76988959	14	65997										
EIF5	0	genome.wustl.edu	37	chr14	103802230	103802230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gtcaaccgcagcgtgtcagaCcagttctatcgctacaagat	9	12	3	2			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	14	103802230	103802230	C	G	SNP	EIF5	ENST00000216554	human	ensembl	69_37n	1	known	missense	c.33	p.D11E	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664	110	0	0	113	123	52.12	-	-	-	G	103802230	C	G	103802230	3	3	752	1	0	0	0	0	1	0	0	0	5077	506	18	4	35	4	EIF5	14	103802230	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09		103802230	3547310	15	65998										
BTBD6	0	genome.wustl.edu	37	chr14	105716214	105716214	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gccgagatggccctacggtcCgaaggcttctgtgagataga	14	10	1	3			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	14	105716214	105716214	C	T	SNP	BTBD6	ENST00000392554	human	ensembl	69_37n	1	known	silent	c.663	p.S221	0.003	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887	21	0	0	24	17	41.46	-	-	-	T	105716214	C	T	105716214	2	4	752	1	0	0	0	0	0	0	0	1	1554	639	23	1		1	BTBD6	14	105716214	Silent	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	1913984	105716214	1633326	16	65999										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32929250	32929250	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	agcacatagcaaggacgaggCtagatcctctttctcacagc	9	12	2	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	15	32929250	32929250	C	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	missense	c.2276	p.A759D	0.007	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	33	0	0	19	26	57.78	-	-	-	A	32929250	C	A	32929250	3	1	752	1	0	0	0	0	1	0	0	0	865	797	28	4	2345	4	ARHGAP11A	15	32929250	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09		32929250	69602142	17	66000										
TBL3	0	genome.wustl.edu	37	chr16	2027601	2027601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ccacgaggacaaggtctgggGgctgcactgcagccggctgg	17	12	1	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	16	2027601	2027601	G	A	SNP	TBL3	ENST00000568546	human	ensembl	69_37n	1	known	missense	c.1829	p.G610E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp13,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL3	HGNC	ENSG00000183751	37	0	0	34	32	48.48	-	-	-	A	2027601	G	A	2027601	3	1	752	1	0	0	0	0	1	0	0	0	15738	1232	43	4	1895	4	TBL3	16	2027601	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		2027601	88327152	18	66001										
GLYR1	0	genome.wustl.edu	37	chr16	4862120	4862122	+	In_Frame_Del	DEL	AGC	AGC	-													0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ggtcttccccatcgcctggaAgcagctgctgcagtcctcat							TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	16	4862120	4862122	AGC	-	DEL	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	in_frame_del	c.1249_1247	p.C416in_frame_del	1.000:1.000:1.000	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	54	0	0	74	55	41.98	-	-	-	-	4862122	AGC	-	4862120	7	5	752	1	0	1	0	1	0	0	0	0	6535	72	3	0	428	0	GLYR1	16	4862120	In_Frame_Del	DEL	AGC	TCGA-E2-A14O-01A-31D-A10Y-09	2834519	4862120	85492633	19	66002										
MARVELD3	0	genome.wustl.edu	37	chr16	71660364	71660365	+	Frame_Shift_Del	DEL	GA	GA	-													0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ggaaccgggaccgggagaggGagagagagagggaaagagac							TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	16	71660364	71660365	GA	-	DEL	MARVELD3	ENST00000299952	human	ensembl	69_37n	1	known	frame_shift_del	c.232_233	p.R81fs	0.012:0.012	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832	30	0	0	19	3	13.64	-	-	-	-	71660365	GA	-	71660364	7	5	752	1	0	1	0	1	0	0	0	0	9390	1175	41	0	234	0	MARVELD3	16	71660364	Frame_Shift_Del	DEL	GA	TCGA-E2-A14O-01A-31D-A10Y-09	66798244	71660364	18694389	20	66003										
FLII	0	genome.wustl.edu	37	chr17	18149307	18149307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gtcttctgccaacttggcttCgtcagggtctgatgcccggc	12	13	4	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	17	18149307	18149307	C	T	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.3337	p.E1113K	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	107	0	0	461	75	13.99	-	-	-	T	18149307	C	T	18149307	3	4	752	1	0	0	0	0	1	0	0	0	5971	893	31	1	492	1	FLII	17	18149307	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09		18149307	63045903	21	66004										
COL1A1	0	genome.wustl.edu	37	chr17	48267939	48267939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	tccagtgggaccagcagggcCgctgggaccactttcaccct	12	15	1	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	17	48267939	48267939	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	69_37n	-1	known	missense	c.2362	p.G788S	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821	100	0	0	98	78	44.32	-	-	-	T	48267939	C	T	48267939	3	4	752	1	0	0	0	0	1	0	0	0	3707	652	23	1	2104	1	COL1A1	17	48267939	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	30118632	48267939	32927271	22	66005										
TANC2	0	genome.wustl.edu	37	chr17	61498828	61498828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	agctgtcgccagtgtctccaActcaaggaggttaccccagt	10	13	2	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	17	61498828	61498828	A	G	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.5485	p.T1829A	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	85	0	0	111	78	40.84	-	-	-	G	61498828	A	G	61498828	3	3	752	1	0	0	0	0	1	0	0	0	15637	43	2	5	5583	5	TANC2	17	61498828	Missense_Mutation	SNP	A	TCGA-E2-A14O-01A-31D-A10Y-09	13230889	61498828	19696382	23	66006										
DAZAP1	0	genome.wustl.edu	37	chr19	1418354	1418354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ctggccagcagaccgcacacGctagatggccgaaacgtaag	12	13	0	2			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	19	1418354	1418354	G	T	SNP	DAZAP1	ENST00000591830	human	ensembl	69_37n	1	novel	missense	c.50	p.R17L	0.140	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DAZAP1	HGNC	ENSG00000071626	30	0	0	42	12	22.22	-	-	-	T	1418354	G	T	1418354	3	4	752	1	0	0	0	0	1	0	0	0	4276	1074	38	3	232	3	DAZAP1	19	1418354	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		1418354	57710629	24	66007										
TRIP10	0	genome.wustl.edu	37	chr19	6750615	6750615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	ggaacccacatcccccatagGtcactgtgtggccatctacc	8	16	2	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	19	6750615	6750615	G	T	SNP	TRIP10	ENST00000313244	human	ensembl	69_37n	1	known	missense	c.1628	p.G543V	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	68	0	0	79	36	31.3	-	-	-	T	6750615	G	T	6750615	3	4	752	1	0	0	0	0	1	0	0	0	16650	1261	44	4	1510	4	TRIP10	19	6750615	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09	5332261	6750615	52378368	25	66008										
EMR2	0	genome.wustl.edu	37	chr19	14866468	14866468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	aactccaccagcactcacacGgtgggagaaggtgaaggtaa	12	10	1	2			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	19	14866468	14866468	G	A	SNP	EMR2	ENST00000315576	human	ensembl	69_37n	-1	known	missense	c.1414	p.R472C	0.047	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	EMR2	HGNC	ENSG00000127507	221	0	0	178	117	39.66	-	-	-	A	14866468	G	A	14866468	3	1	752	1	0	0	0	0	1	0	0	0	5142	1116	39	1	1093	1	EMR2	19	14866468	Missense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09	8115853	14866468	44262515	26	66009										
RASAL3	0	genome.wustl.edu	37	chr19	15565621	15565621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	agagggaggcgcacaccagtCgggggcccagcacctcagag	16	13	1	2			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	19	15565621	15565621	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.1805	p.R602Q	0.992	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	91	0	0	52	28	35	-	-	-	T	15565621	C	T	15565621	3	4	752	1	0	0	0	0	1	0	0	0	13148	884	31	1	1258	1	RASAL3	19	15565621	Missense_Mutation	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	699153	15565621	43563362	27	66010										
PJA1	0	genome.wustl.edu	37	chrX	68382547	68382547	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gactgggtctaacttgtctcGctcctctctcacatcacggc	8	15	5	0			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	X	68382547	68382547	G	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	nonsense	c.535	p.R179*	0.001	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	61	0	0	121	44	26.51	-	-	-	A	68382547	G	A	68382547	4	1	752	1	0	0	0	0	0	1	0	0	12035	1095	38	1	1400	1	PJA1	23	68382547	Nonsense_Mutation	SNP	G	TCGA-E2-A14O-01A-31D-A10Y-09		68382547	86888013	28	66011										
AMMECR1	0	genome.wustl.edu	37	chrX	109561207	109561209	+	In_Frame_Del	DEL	GGA	GGA	-													0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	tggctctctccgctgcagtgGgaggaggaggaggcgccacc							TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	X	109561207	109561209	GGA	-	DEL	AMMECR1	ENST00000262844	human	ensembl	69_37n	-1	known	in_frame_del	c.93_91	p.S31in_frame_del	0.359:0.594:0.602	NULL	pfam_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935	9	0	0	6	2	25	-	-	-	-	109561209	GGA	-	109561207	7	5	752	1	0	1	0	1	0	0	0	0	578	1219	43	0	932	0	AMMECR1	23	109561207	In_Frame_Del	DEL	GGA	TCGA-E2-A14O-01A-31D-A10Y-09	41178660	109561207	45709353	29	66012										
IRAK1	0	genome.wustl.edu	37	chrX	153284685	153284685	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	0.999387256799277	0.583561643835616	0	0.625244618395303	1	1	0	gaggctgaggatggcaacttCcgggggctccaggcctcggc	17	12	0	1			TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6ab6f8d-0e65-40a3-bf98-7249e4075395	3315cbc2-91d3-407d-b030-0d20dc9f4aff	X	153284685	153284685	C	A	SNP	IRAK1	ENST00000369980	human	ensembl	69_37n	-1	known	silent	c.399	p.R133	0.037	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	52	0	0	52	20	27.78	-	-	-	A	153284685	C	A	153284685	2	1	752	1	0	0	0	0	0	0	0	1	7875	842	30	2		2	IRAK1	23	153284685	Silent	SNP	C	TCGA-E2-A14O-01A-31D-A10Y-09	43723478	153284685	1985875	30	66013										
HP1BP3	0	genome.wustl.edu	37	chr1	21076220	21076220	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cacaaccgagtcttactttgAtagttagaattggttcctgg	9	8	1	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	21076220	21076220	A	G	SNP	HP1BP3	ENST00000312239	human	ensembl	69_37n	-1	known	silent	c.1137	p.Y379	0.974	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5	-	no_errors	HP1BP3	HGNC	ENSG00000127483	183	1	0.54	82	86	51.19	-	-	-	G	21076220	A	G	21076220	2	3	753	1	0	0	0	0	0	0	0	1	7379	340	12	5		5	HP1BP3	1	21076220	Silent	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09		21076220	228174401	1	66014										
HSPG2	0	genome.wustl.edu	37	chr1	22156504	22156504	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	accttcctcacaccgcaaccCcgagcggcccaggtggcagc	10	19	1	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	22156504	22156504	C	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	missense	c.11752	p.G3918W	0.994	smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	35	0	0	32	13	28.89	-	-	-	A	22156504	C	A	22156504	3	1	753	1	0	0	0	0	1	0	0	0	7484	623	22	4	1471	4	HSPG2	1	22156504	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	1080284	22156504	227094117	2	66015										
UBXN11	0	genome.wustl.edu	37	chr1	26608929	26608929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tgaatttcaggctggacttcGgggctcggcgtgcccgcagc	15	12	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	26608929	26608929	G	A	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.1424	p.P475L	0.003	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	43	0	0	40	6	13.04	-	-	-	A	26608929	G	A	26608929	3	1	753	1	0	0	0	0	1	0	0	0	17010	1116	39	1	142	1	UBXN11	1	26608929	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	4452425	26608929	222641692	3	66016										
STIL	0	genome.wustl.edu	37	chr1	47728698	47728698	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcaccccctgttggtccagtCtgtaaacacatgcttacact	7	14	1	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	47728698	47728698	C	T	SNP	STIL	ENST00000371877	human	ensembl	69_37n	-1	known	silent	c.2706	p.Q902	0.220	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473	356	0	0	477	78	14.05	-	-	-	T	47728698	C	T	47728698	2	4	753	1	0	0	0	0	0	0	0	1	15373	912	32	2		2	STIL	1	47728698	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	21119769	47728698	201521923	4	66017										
SLC5A9	0	genome.wustl.edu	37	chr1	48696327	48696327	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ggcattgggctggaacctgtAcctctccacagggatcctgc	12	13	1	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	48696327	48696327	A	G	SNP	SLC5A9	ENST00000236495	human	ensembl	69_37n	1	known	missense	c.635	p.Y212C	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	174	0	0	128	56	29.95	-	-	-	G	48696327	A	G	48696327	3	3	753	1	0	0	0	0	1	0	0	0	14761	391	14	5	657	5	SLC5A9	1	48696327	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09	967629	48696327	200554294	5	66018										
HFM1	0	genome.wustl.edu	37	chr1	91859834	91859834	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	acctaccccttctaaatttaGatcatcctgttcatatttat	2	11	3	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	91859834	91859834	G	C	SNP	HFM1	ENST00000370425	human	ensembl	69_37n	-1	known	missense	c.310	p.L104V	0.003	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669	305	0	0	428	139	24.43	-	-	-	C	91859834	G	C	91859834	3	2	753	1	0	0	0	0	1	0	0	0	7134	933	33	2	4141	2	HFM1	1	91859834	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	43163507	91859834	157390787	6	66019										
ARHGEF2	0	genome.wustl.edu	37	chr1	155922540	155922540	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ccaccatcctcttcggcctgGaaatgggtcatctcagcaaa	8	14	3	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	155922540	155922540	G	A	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	silent	c.1866	p.F622	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	112	0	0	42	79	65.29	-	-	-	A	155922540	G	A	155922540	2	1	753	1	0	0	0	0	0	0	0	1	905	1165	41	2		2	ARHGEF2	1	155922540	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	64062706	155922540	93328081	7	66020										
IKBKE	0	genome.wustl.edu	37	chr1	206649567	206649567	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gagaacggcattgtgcatcgCgacatcaagccggggaacat	13	10	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	206649567	206649567	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	1	known	silent	c.402	p.R134	0.004	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	79	0	0	51	12	19.05	-	-	-	T	206649567	C	T	206649567	2	4	753	1	0	0	0	0	0	0	0	1	7666	755	27	1		1	IKBKE	1	206649567	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	50727027	206649567	42601054	8	66021										
KMO	0	genome.wustl.edu	37	chr1	241750005	241750005	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ttgaagactgcttggtatttGatgagttaatggataaattc	10	3	0	4			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	1	241750005	241750005	G	C	SNP	KMO	ENST00000366559	human	ensembl	69_37n	1	known	missense	c.982	p.D328H	1.000	NULL	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	216	0	0	318	65	16.93	-	-	-	C	241750005	G	C	241750005	3	2	753	1	0	0	0	0	1	0	0	0	8477	1290	45	2	1024	2	KMO	1	241750005	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	35100438	241750005	7500616	9	66022										
KCNS3	0	genome.wustl.edu	37	chr2	18112646	18112646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cagcaatcgctaccaggaacGcaaggaggaaaaccacgaga	11	11	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	18112646	18112646	G	A	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	1	known	missense	c.371	p.R124H	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv2	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	157	0	0	118	31	20.67	-	-	-	A	18112646	G	A	18112646	3	1	753	1	0	0	0	0	1	0	0	0	8144	1087	38	1	373	1	KCNS3	2	18112646	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		18112646	225086727	10	66023										
OXER1	0	genome.wustl.edu	37	chr2	42990664	42990664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcccgttgaggagcaggatgCccacccagagtcccccggcc	13	17	0	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	42990664	42990664	C	T	SNP	OXER1	ENST00000378661	human	ensembl	69_37n	-1	known	missense	c.656	p.G219D	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881	31	0	0	19	9	32.14	-	-	-	T	42990664	C	T	42990664	3	4	753	1	0	0	0	0	1	0	0	0	11404	739	26	4	619	4	OXER1	2	42990664	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	24878018	42990664	200208709	11	66024										
RNF103	0	genome.wustl.edu	37	chr2	86831287	86831287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctggtctgacaatatttattGgcacatgaacaagcctcagc	8	10	2	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	86831287	86831287	G	A	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	silent	c.1737	p.A579	0.997	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	216	0	0	165	39	19.12	-	-	-	A	86831287	G	A	86831287	2	1	753	1	0	0	0	0	0	0	0	1	13509	1335	47	4		4	RNF103	2	86831287	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	43840623	86831287	156368086	12	66025										
ERCC3	0	genome.wustl.edu	37	chr2	128046289	128046289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcccgtttccaaacatctttCgcaagctcttctcctgatag	6	14	3	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	128046289	128046289	C	T	SNP	ERCC3	ENST00000285398	human	ensembl	69_37n	-1	known	missense	c.974	p.R325Q	1.000	pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,tigrfam_XPGB_DNA_repair	pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_XPGB_DNA_repair,tigrfam_XPGB_DNA_repair	-	no_errors	ERCC3	HGNC	ENSG00000163161	156	0	0	115	19	14.18	-	-	-	T	128046289	C	T	128046289	3	4	753	1	0	0	0	0	1	0	0	0	5251	884	31	1	1410	1	ERCC3	2	128046289	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	41215002	128046289	115153084	13	66026										
IWS1	0	genome.wustl.edu	37	chr2	128260411	128260411	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tgtaaattcttcttcctcttCatcaccagattctccaaata	2	12	6	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	128260411	128260411	C	T	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	missense	c.1447	p.E483K	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	404	0	0	462	104	18.37	-	-	-	T	128260411	C	T	128260411	3	4	753	1	0	0	0	0	1	0	0	0	7985	835	29	2	1052	2	IWS1	2	128260411	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	214122	128260411	114938962	14	66027										
POTEF	0	genome.wustl.edu	37	chr2	130868152	130868155	+	Frame_Shift_Del	DEL	GTCT	GTCT	-													0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	aaacagcatactctctggccGtctgtccagatagatcttga							TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	GTCT	GTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	130868152	130868155	GTCT	-	DEL	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	frame_shift_del	c.1019_1016	p.Q339fs	0.018:0.018:0.015:0.007	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	174	0	0	122	17	12.23	-	-	-	-	130868155	GTCT	-	130868152	7	5	753	1	0	1	0	1	0	0	0	0	12339	1145	40	0	2252	0	POTEF	2	130868152	Frame_Shift_Del	DEL	GTCT	TCGA-E2-A14P-01A-31D-A12B-09	2607741	130868152	112331221	15	66028										
TTN	0	genome.wustl.edu	37	chr2	179456809	179456809	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ggtactggttgccttcattcAgatgcttagcgaagtgactc	11	9	2	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	179456809	179456809	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.52118	p.L17373R	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	180	0	0	171	35	16.99	-	-	-	C	179456809	A	C	179456809	3	2	753	1	0	0	0	0	1	0	0	0	16832	188	7	5	48401	5	TTN	2	179456809	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09	48588657	179456809	63742564	16	66029										
TTN	0	genome.wustl.edu	37	chr2	179476280	179476280	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	catttctcagtgcctactggAcacatttcaacatggtatcc	6	12	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	179476280	179476280	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.42972	p.C14324	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	157	0	0	155	30	16.13	-	-	-	G	179476280	A	G	179476280	2	3	753	1	0	0	0	0	0	0	0	1	16832	273	10	5		5	TTN	2	179476280	Silent	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09	19471	179476280	63723093	17	66030										
ZDBF2	0	genome.wustl.edu	37	chr2	207175720	207175720	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tttttaaatcatgatgttgtCaaaatctctccaaaatcagt	4	7	4	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	207175720	207175720	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	silent	c.6468	p.V2156	0.005	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	51	0	0	53	11	17.19	-	-	-	T	207175720	C	T	207175720	2	4	753	1	0	0	0	0	0	0	0	1	17695	813	29	2		2	ZDBF2	2	207175720	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	27699440	207175720	36023653	18	66031										
FAM124B	0	genome.wustl.edu	37	chr2	225266233	225266233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atgctggagagagtccaggaCgcgaaatagcctatcctctc	11	11	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	225266233	225266233	C	T	SNP	FAM124B	ENST00000409685	human	ensembl	69_37n	-1	known	missense	c.253	p.V85I	0.002	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019	74	0	0	76	19	20	-	-	-	T	225266233	C	T	225266233	3	4	753	1	0	0	0	0	1	0	0	0	5466	536	19	1	1213	1	FAM124B	2	225266233	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	18090513	225266233	17933140	19	66032										
NMUR1	0	genome.wustl.edu	37	chr2	232392911	232392911	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atctggacctggctgctgcaGagcccctgcccttggcctcc	11	17	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	2	232392911	232392911	G	A	SNP	NMUR1	ENST00000305141	human	ensembl	69_37n	-1	known	missense	c.821	p.S274F	0.007	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NeuromedU_rcpt_1,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMUR1	HGNC	ENSG00000171596	36	0	0	12	7	36.84	-	-	-	A	232392911	G	A	232392911	3	1	753	1	0	0	0	0	1	0	0	0	10578	942	33	2	467	2	NMUR1	2	232392911	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	7126678	232392911	10806462	20	66033										
EEFSEC	0	genome.wustl.edu	37	chr3	127983621	127983621	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	agtgtggagatccctgccctCaaggtcagtcttaccttgtc	10	12	3	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	3	127983621	127983621	C	A	SNP	EEFSEC	ENST00000254730	human	ensembl	69_37n	1	known	silent	c.783	p.L261	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EEFSEC	HGNC	ENSG00000132394	118	0	0	49	77	61.11	-	-	-	A	127983621	C	A	127983621	2	1	753	1	0	0	0	0	0	0	0	1	4966	813	29	2		2	EEFSEC	3	127983621	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		127983621	70038809	21	66034										
IFT122	0	genome.wustl.edu	37	chr3	129200411	129200411	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gacaatctctttgctatcgtCctgctgaagcaggccacagc	9	13	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	3	129200411	129200411	C	G	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	silent	c.1680	p.V560	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	290	2	0.68	112	145	56.42	-	-	-	G	129200411	C	G	129200411	2	3	753	1	0	0	0	0	0	0	0	1	7609	842	30	2		2	IFT122	3	129200411	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	1216790	129200411	68822019	22	66035										
ABCC5	0	genome.wustl.edu	37	chr3	183669317	183669317	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gggcttcgaaggatccttcgGaaaagctcgtcatgcagccg	13	11	1	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	3	183669317	183669317	G	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.2856	p.F952L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	110	0	0	96	20	17.24	-	-	-	C	183669317	G	C	183669317	3	2	753	1	0	0	0	0	1	0	0	0	56	1165	41	2	1501	2	ABCC5	3	183669317	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	54468906	183669317	14353113	23	66036										
EIF2B5	0	genome.wustl.edu	37	chr3	183855975	183855975	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcctgtttcagggcagtagtGatggagtggaggttcgatat	16	5	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	3	183855975	183855975	G	A	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	1	known	missense	c.706	p.D236N	0.995	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	289	0	0	255	48	15.79	-	-	-	A	183855975	G	A	183855975	3	1	753	1	0	0	0	0	1	0	0	0	5039	1290	45	2	724	2	EIF2B5	3	183855975	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	186658	183855975	14166455	24	66037										
TBC1D9	0	genome.wustl.edu	37	chr4	141578724	141578724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cccatcatccttgcagttcaAcagtttgtccacatttgcat	5	13	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	4	141578724	141578724	A	G	SNP	TBC1D9	ENST00000442267	human	ensembl	69_37n	-1	known	silent	c.2164	p.L722	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436	248	0	0	179	43	19.37	-	-	-	G	141578724	A	G	141578724	2	3	753	1	0	0	0	0	0	0	0	1	15722	40	2	5		5	TBC1D9	4	141578724	Silent	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09		141578724	49575552	25	66038										
MFAP3L	0	genome.wustl.edu	37	chr4	170912621	170912621	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	agctggcggcagtaccttatCtggtacctcaacaggtgttg	12	10	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	4	170912621	170912621	C	T	SNP	MFAP3L	ENST00000361618	human	ensembl	69_37n	-1	known	missense	c.1138	p.D380N	0.046	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3L	HGNC	ENSG00000198948	283	0	0	152	42	21.65	-	-	-	T	170912621	C	T	170912621	3	4	753	1	0	0	0	0	1	0	0	0	9587	913	32	2	95	2	MFAP3L	4	170912621	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	29333897	170912621	20241655	26	66039										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720243	140720243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tcctgtaccctgccttccccAcagacggttccactggcgtg	9	17	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	5	140720243	140720243	A	G	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.1705	p.T569A	0.999	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	96	0	0	29	23	44.23	-	-	-	G	140720243	A	G	140720243	3	3	753	1	0	0	0	0	1	0	0	0	11627	159	6	5	1707	5	PCDHGA2	5	140720243	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09		140720243	40195017	27	66040										
DUSP22	0	genome.wustl.edu	37	chr6	348862	348862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gtaaatataaggagcaagggCgcacagagccccagcccggc	13	12	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	348862	348862	C	T	SNP	DUSP22	ENST00000419235	human	ensembl	69_37n	1	known	missense	c.341	p.A114V	0.557	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DUSP22	HGNC	ENSG00000112679	115	0	0	91	16	14.81	-	-	-	T	348862	C	T	348862	3	4	753	1	0	0	0	0	1	0	0	0	4856	783	27	1		1	DUSP22	6	348862	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		348862	170766205	28	66041										
MAS1L	0	genome.wustl.edu	37	chr6	29454744	29454744	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctccccacaaagaaataaatGatagggttggcgctgctgtt	10	9	0	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	29454744	29454744	G	A	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	silent	c.936	p.I312	0.748	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	183	0	0	102	33	24.44	-	-	-	A	29454744	G	A	29454744	2	1	753	1	0	0	0	0	0	0	0	1	9392	1280	45	2		2	MAS1L	6	29454744	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	29105882	29454744	141660323	29	66042										
MAS1L	0	genome.wustl.edu	37	chr6	29455332	29455332	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	agatagatcacgtcagcagcGaccaggtggaggatgtatac	13	8	2	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	29455332	29455332	G	A	SNP	MAS1L	ENST00000377127	human	ensembl	69_37n	-1	known	silent	c.348	p.V116	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1L	HGNC	ENSG00000204687	89	0	0	51	16	23.88	-	-	-	A	29455332	G	A	29455332	2	1	753	1	0	0	0	0	0	0	0	1	9392	1045	37	1		1	MAS1L	6	29455332	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	588	29455332	141659735	30	66043										
LTA	0	genome.wustl.edu	37	chr6	31541102	31541102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tgctctggagagcaaacacgGaccgtgccttcctccaggat	11	13	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	31541102	31541102	G	A	SNP	LTA	ENST00000418386	human	ensembl	69_37n	1	known	missense	c.250	p.D84N	0.176	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_beta,prints_TNF_a/b/c	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pfscan_TNF,prints_TNF_beta,prints_TNF_a/b/c	-	no_errors	LTA	HGNC	ENSG00000226979	128	0	0	66	19	22.35	-	-	-	A	31541102	G	A	31541102	3	1	753	1	0	0	0	0	1	0	0	0	9134	1174	41	2	260	2	LTA	6	31541102	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	2085770	31541102	139573965	31	66044										
IYD	0	genome.wustl.edu	37	chr6	150715289	150715289	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cctattttgattctcattttCaaacaagtacatggtttcgc	5	9	2	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	150715289	150715289	C	T	SNP	IYD	ENST00000229447	human	ensembl	69_37n	1	known	silent	c.585	p.F195	1.000	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	-	no_errors	IYD	HGNC	ENSG00000009765	147	0	0	145	43	22.87	-	-	-	T	150715289	C	T	150715289	2	4	753	1	0	0	0	0	0	0	0	1	7986	825	29	2		2	IYD	6	150715289	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	119174187	150715289	20399778	32	66045										
VIP	0	genome.wustl.edu	37	chr6	153077328	153077328	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctcagatgcagtcttcactgAcaactatacccgccttagaa	6	13	3	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	6	153077328	153077328	A	T	SNP	VIP	ENST00000367244	human	ensembl	69_37n	1	known	missense	c.395	p.D132V	1.000	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	VIP	HGNC	ENSG00000146469	103	0	0	182	38	17.27	-	-	-	T	153077328	A	T	153077328	3	4	753	1	0	0	0	0	1	0	0	0	17264	275	10	5	409	5	VIP	6	153077328	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09	2362039	153077328	18037739	33	66046										
ZDHHC4	0	genome.wustl.edu	37	chr7	6621256	6621256	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	agatattttcctgtataattCcagaatgtcttcagagagcc	7	8	2	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	6621256	6621256	C	G	SNP	ZDHHC4	ENST00000335965	human	ensembl	69_37n	1	known	missense	c.136	p.P46A	0.972	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC4	HGNC	ENSG00000136247	423	0	0	233	328	58.47	-	-	-	G	6621256	C	G	6621256	3	3	753	1	0	0	0	0	1	0	0	0	17713	855	30	2	142	2	ZDHHC4	7	6621256	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		6621256	152517407	34	66047										
BBS9	0	genome.wustl.edu	37	chr7	33407456	33407456	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gaggtgctcgaattactgttCttgcttccaaaacttctcgt	8	10	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	33407456	33407456	C	T	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.1771	p.L591F	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	515	0	0	478	112	18.95	-	-	-	T	33407456	C	T	33407456	3	4	753	1	0	0	0	0	1	0	0	0	1346	913	32	2	1833	2	BBS9	7	33407456	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	26786200	33407456	125731207	35	66048										
NPSR1	0	genome.wustl.edu	37	chr7	34724283	34724283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atgaccttctttgtgactcaGctggccatcacaggtaagta	9	10	3	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	34724283	34724283	G	T	SNP	NPSR1	ENST00000381539	human	ensembl	69_37n	1	known	missense	c.267	p.Q89H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	NPSR1	HGNC	ENSG00000187258	321	0	0	288	63	17.95	-	-	-	T	34724283	G	T	34724283	3	4	753	1	0	0	0	0	1	0	0	0	10673	962	34	4	273	4	NPSR1	7	34724283	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	1316827	34724283	124414380	36	66049										
GLI3	0	genome.wustl.edu	37	chr7	42064883	42064883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctgctgcccccgagcccctgGgctggggaggtcttcatcgg	15	15	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	42064883	42064883	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.1336	p.P446S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	153	0	0	78	25	24.27	-	-	-	A	42064883	G	A	42064883	3	1	753	1	0	0	0	0	1	0	0	0	6491	1232	43	4	3434	4	GLI3	7	42064883	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	7340600	42064883	117073780	37	66050										
MCM7	0	genome.wustl.edu	37	chr7	99695338	99695338	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cgtatatttctggggcgattGaagctgccagcttttcgtag	12	8	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	99695338	99695338	G	T	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	nonsense	c.1016	p.S339*	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	490	0	0	427	122	22.18	-	-	-	T	99695338	G	T	99695338	4	4	753	1	0	0	0	0	0	1	0	0	9463	1294	45	2	1171	2	MCM7	7	99695338	Nonsense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	57630455	99695338	59443325	38	66051										
PLXNA4	0	genome.wustl.edu	37	chr7	131982906	131982906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	cttggagaaggccatatcccGgaggactgggccggggtcca	16	11	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	7	131982906	131982906	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.1447	p.R483W	0.989	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	88	0	0	54	32	37.21	-	-	-	A	131982906	G	A	131982906	3	1	753	1	0	0	0	0	1	0	0	0	12196	1115	39	1	4353	1	PLXNA4	7	131982906	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	32287568	131982906	27155757	39	66052										
RNF170	0	genome.wustl.edu	37	chr8	42711536	42711536	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atttccctgaatgcatgcctCagtaaagtgggtagatccat	9	9	1	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	8	42711536	42711536	C	T	SNP	RNF170	ENST00000527424	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	1.000	NULL	pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF170	HGNC	ENSG00000120925	210	0	0	274	113	29.2	-	-	-	T	42711536	C	T	42711536	2	4	753	1	0	0	0	0	0	0	0	1	13548	813	29	2		2	RNF170	8	42711536	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		42711536	103652486	40	66053										
UBR5	0	genome.wustl.edu	37	chr8	103284901	103284901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atccttaaatgtgacttttaCtctgtgtacagccattggtg	8	8	1	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	8	103284901	103284901	C	T	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.6829	p.V2277I	1.000	superfamily_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	185	0	0	138	39	22.03	-	-	-	T	103284901	C	T	103284901	3	4	753	1	0	0	0	0	1	0	0	0	17002	565	20	4	1618	4	UBR5	8	103284901	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	60573365	103284901	43079121	41	66054										
ZCCHC6	0	genome.wustl.edu	37	chr9	88920155	88920155	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atgattcaaatcaaagggatCtaagcaaaaaaatttaagag	7	4	3	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	9	88920155	88920155	C	T	SNP	ZCCHC6	ENST00000375963	human	ensembl	69_37n	-1	known	splice_site	c.3839-1	e22-1	1.000	-	-	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	182	0	0	184	99	34.98	-	-	-	T	88920155	C	T	88920155	5	4	753	1	0	0	0	0	0	0	1	0	17688	927	32	2	669	2	ZCCHC6	9	88920155	Splice_Site	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		88920155	52293276	42	66055										
EHMT1	0	genome.wustl.edu	37	chr9	140729293	140729293	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctgccgctgcggctcccccaAgtgccggcactcgagcgcgg	14	18	0	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	9	140729293	140729293	A	G	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	1	known	missense	c.3785	p.K1262R	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	28	0	0	10	10	50	-	-	-	G	140729293	A	G	140729293	3	3	753	1	0	0	0	0	1	0	0	0	5018	72	3	5	3940	5	EHMT1	9	140729293	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09	51809138	140729293	484138	43	66056										
JAKMIP3	0	genome.wustl.edu	37	chr10	133967268	133967268	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tctgtttgtgtccagtggctCcagcagattgaggagacaga	13	8	1	4			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	10	133967268	133967268	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	69_37n	1	known	silent	c.2073	p.L691	0.736	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	57	0	0	48	14	22.58	-	-	-	T	133967268	C	T	133967268	2	4	753	1	0	0	0	0	0	0	0	1	7996	842	30	2		2	JAKMIP3	10	133967268	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		133967268	1567479	44	66057										
OR8J1	0	genome.wustl.edu	37	chr11	56127893	56127893	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gttgactctcgacttcaaacCcccatgtactttttcctgca	5	14	2	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	11	56127893	56127893	C	A	SNP	OR8J1	ENST00000303039	human	ensembl	69_37n	1	known	silent	c.171	p.T57	0.525	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8J1	HGNC	ENSG00000172487	353	1	0.28	401	58	12.64	-	-	-	A	56127893	C	A	56127893	2	1	753	1	0	0	0	0	0	0	0	1	11314	610	22	4		4	OR8J1	11	56127893	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		56127893	78878623	45	66058										
ANO2	0	genome.wustl.edu	37	chr12	5848498	5848498	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctcacttcttcctcttctatGccagtcaggtcccaaaagta	5	14	5	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	12	5848498	5848498	G	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	silent	c.1410	p.G470	0.295	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	241	0	0	205	51	19.92	-	-	-	T	5848498	G	T	5848498	2	4	753	1	0	0	0	0	0	0	0	1	696	1306	46	4		4	ANO2	12	5848498	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		5848498	128003397	46	66059										
ABCC9	0	genome.wustl.edu	37	chr12	22025600	22025600	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tccaatgtctgcatctcaccGaggatggcaaggagaagaga	12	9	2	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	12	22025600	22025600	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	silent	c.2157	p.L719	0.074	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	228	1	0.44	196	45	18.6	-	-	-	A	22025600	G	A	22025600	2	1	753	1	0	0	0	0	0	0	0	1	59	1045	37	1		1	ABCC9	12	22025600	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	16177102	22025600	111826295	47	66060										
DBX2	0	genome.wustl.edu	37	chr12	45444337	45444337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	aaggctggaaggtacagtctCggtcccccggagcccggccc	14	15	1	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	12	45444337	45444337	C	T	SNP	DBX2	ENST00000332700	human	ensembl	69_37n	-1	known	missense	c.374	p.R125Q	0.829	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	17	0	0	6	5	45.45	-	-	-	T	45444337	C	T	45444337	3	4	753	1	0	0	0	0	1	0	0	0	4292	884	31	1	661	1	DBX2	12	45444337	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	23418737	45444337	88407558	48	66061										
C12orf44	0	genome.wustl.edu	37	chr12	52470890	52470890	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gtgcagccctacctgtacaaGatctccttccagatcactga	7	14	2	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	12	52470890	52470890	G	T	SNP	C12orf44	ENST00000336854	human	ensembl	69_37n	1	known	missense	c.573	p.K191N	1.000	NULL	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395	73	0	0	41	11	20.75	-	-	-	T	52470890	G	T	52470890	3	4	753	1	0	0	0	0	1	0	0	0	1702	933	33	2	579	2	C12orf44	12	52470890	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	7026553	52470890	81381005	49	66062										
MBD6	0	genome.wustl.edu	37	chr12	57919306	57919306	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcaggccctggggggcttttCcccccaaggcttgctgaccc	13	16	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	12	57919306	57919306	C	T	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	silent	c.555	p.F185	0.998	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987	94	0	0	28	20	41.67	-	-	-	T	57919306	C	T	57919306	2	4	753	1	0	0	0	0	0	0	0	1	9419	854	30	2		2	MBD6	12	57919306	Silent	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	5448416	57919306	75932589	50	66063										
OR4K2	0	genome.wustl.edu	37	chr14	20344474	20344474	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tctgaatttgttttgctgggGctctctaattcctgggaact	10	8	2	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	14	20344474	20344474	G	T	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	silent	c.48	p.G16	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	401	0	0	513	158	23.55	-	-	-	T	20344474	G	T	20344474	2	4	753	1	0	0	0	0	0	0	0	1	11145	1190	42	4		4	OR4K2	14	20344474	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		20344474	87005066	51	66064										
PRMT5	0	genome.wustl.edu	37	chr14	23397820	23397820	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gacaggcatgcagaggaaatCaaacctacaaccgcgacaga	10	11	1	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	14	23397820	23397820	C	G	SNP	PRMT5	ENST00000324366	human	ensembl	69_37n	-1	known	missense	c.115	p.D39H	1.000	pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462	120	0	0	143	53	27.04	-	-	-	G	23397820	C	G	23397820	3	3	753	1	0	0	0	0	1	0	0	0	12620	826	29	2	1862	2	PRMT5	14	23397820	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	3053346	23397820	83951720	52	66065										
SAMD4A	0	genome.wustl.edu	37	chr14	55251057	55251057	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ttagtctccgttttgttccaGgttcccaagttcacagtgga	9	10	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	14	55251057	55251057	G	A	SNP	SAMD4A	ENST00000553988	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.043	-	-	-	no_errors	SAMD4A	HGNC	ENSG00000020577	266	0	0	167	48	22.22	-	-	-	A	55251057	G	A	55251057	5	1	753	1	0	0	0	0	0	0	1	0	13907	1014	35	4	2083	4	SAMD4A	14	55251057	Splice_Site	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	31853237	55251057	52098483	53	66066										
KIAA0586	0	genome.wustl.edu	37	chr14	58910712	58910715	+	Frame_Shift_Del	DEL	AATT	AATT	-													0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	aaaagtcaattctgttacagAattacttagtaaattacagg							TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	AATT	AATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	14	58910712	58910715	AATT	-	DEL	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	frame_shift_del	c.581_584	p.E194fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	104	0	0	89	19	17.59	-	-	-	-	58910715	AATT	-	58910712	7	5	753	1	0	1	0	1	0	0	0	0	8238	246	9	0	648	0	KIAA0586	14	58910712	Frame_Shift_Del	DEL	AATT	TCGA-E2-A14P-01A-31D-A12B-09	3659655	58910712	48438828	54	66067										
YLPM1	0	genome.wustl.edu	37	chr14	75248571	75248571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	caccagttcttcccccaccaTctctctcttcaacagcacct	2	20	4	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	14	75248571	75248571	T	C	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.1825	p.S609P	0.397	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	291	0	0	152	91	37.3	-	-	-	C	75248571	T	C	75248571	3	2	753	1	0	0	0	0	1	0	0	0	17583	1435	50	5	1839	5	YLPM1	14	75248571	Missense_Mutation	SNP	T	TCGA-E2-A14P-01A-31D-A12B-09	16337859	75248571	32100969	55	66068										
WDR76	0	genome.wustl.edu	37	chr15	44119242	44119242	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	agccgaaagatgtccaggtcGggcgcggcggctgagaaggc	18	10	0	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	15	44119242	44119242	G	T	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	silent	c.12	p.S4	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	44	0	0	32	7	17.95	-	-	-	T	44119242	G	T	44119242	2	4	753	1	0	0	0	0	0	0	0	1	17423	1103	39	3		3	WDR76	15	44119242	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		44119242	58412150	56	66069										
ADAMTS7	0	genome.wustl.edu	37	chr15	79067106	79067106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ggcggaagcgcttgcgctcaCccacacagtatctgcctttg	11	14	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	15	79067106	79067106	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	missense	c.1736	p.G579D	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	109	0	0	69	9	11.54	-	-	-	T	79067106	C	T	79067106	3	4	753	1	0	0	0	0	1	0	0	0	271	507	18	4	3376	4	ADAMTS7	15	79067106	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	34947864	79067106	23464286	57	66070										
WDR93	0	genome.wustl.edu	37	chr15	90276247	90276248	+	Frame_Shift_Ins	INS	-	-	G													0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tttctctaggattccctcttINSggggtcgctgctcttcctca							TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	15	90276247	90276248	-	G	INS	WDR93	ENST00000268130	human	ensembl	69_37n	1	known	frame_shift_ins	c.1341_1342	p.V448fs	0.705:0.975	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527	128	0	0	171	29	14.5	-	-	-	G	90276248	-	G	90276247	7	5	753	1	0	1	1	0	0	0	0	0	17437	1799	63	0	1387	0	WDR93	15	90276247	Frame_Shift_Ins	INS	-	TCGA-E2-A14P-01A-31D-A12B-09	11209141	90276247	12255145	58	66071										
SMPD3	0	genome.wustl.edu	37	chr16	68404767	68404767	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gccgaggtctcctaccttgaGaaacagagctcccttagagg	11	12	1	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	16	68404767	68404767	G	T	SNP	SMPD3	ENST00000219334	human	ensembl	69_37n	-1	known	missense	c.1318	p.L440I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056	98	0	0	105	18	14.63	-	-	-	T	68404767	G	T	68404767	3	4	753	1	0	0	0	0	1	0	0	0	14895	942	33	2	677	2	SMPD3	16	68404767	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		68404767	21949986	59	66072										
TP53	0	genome.wustl.edu	37	chr17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gtagatggccatggcgcggaCgcgggtgccgggcgggggtg	23	9	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	17	7578461	7578461	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.469	p.V157F	0.032	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	84	0	0	32	35	52.24	-	-	-	A	7578461	C	A	7578461	3	1	753	1	0	0	0	0	1	0	0	0	16477	536	19	3	829	3	TP53	17	7578461	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		7578461	73616749	60	66073										
CD300E	0	genome.wustl.edu	37	chr17	72613390	72613390	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tgcatggtcacagtgaaggcGagagcctccgggtggtctct	15	10	2	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	17	72613390	72613390	G	A	SNP	CD300E	ENST00000426295	human	ensembl	69_37n	-1	known	silent	c.378	p.L126	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300E	HGNC	ENSG00000186407	155	0	0	103	68	39.31	-	-	-	A	72613390	G	A	72613390	2	1	753	1	0	0	0	0	0	0	0	1	3027	1045	37	1		1	CD300E	17	72613390	Silent	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	65034929	72613390	8581820	61	66074										
PTPRM	0	genome.wustl.edu	37	chr18	8387170	8387170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctccttcttgaagctcattcGccaggtggacaagtggcaag	11	11	2	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	18	8387170	8387170	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.4148	p.R1383H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	192	0	0	131	71	35.15	-	-	-	A	8387170	G	A	8387170	3	1	753	1	0	0	0	0	1	0	0	0	12889	1087	38	1	4267	1	PTPRM	18	8387170	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		8387170	69690078	62	66075										
KIAA1328	0	genome.wustl.edu	37	chr18	34465536	34465536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tcagagtaagtgaggaaaagGaagtgacagaggaaagactg	15	3	1	5			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	18	34465536	34465536	G	A	SNP	KIAA1328	ENST00000280020	human	ensembl	69_37n	1	known	missense	c.349	p.E117K	1.000	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	165	0	0	154	36	18.95	-	-	-	A	34465536	G	A	34465536	3	1	753	1	0	0	0	0	1	0	0	0	8277	1175	41	2	367	2	KIAA1328	18	34465536	Missense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09	26078366	34465536	43611712	63	66076										
PIAS2	0	genome.wustl.edu	37	chr18	44400931	44400931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	acatgcttgatattggcgtaTggtggaatggtactgagtag	14	4	0	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	18	44400931	44400931	T	C	SNP	PIAS2	ENST00000585916	human	ensembl	69_37n	-1	known	missense	c.1613	p.H538R	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS2	HGNC	ENSG00000078043	363	2	0.55	286	74	20.56	-	-	-	C	44400931	T	C	44400931	3	2	753	1	0	0	0	0	1	0	0	0	11950	1464	51	5	339	5	PIAS2	18	44400931	Missense_Mutation	SNP	T	TCGA-E2-A14P-01A-31D-A12B-09	9935395	44400931	33676317	64	66077										
HNRNPL	0	genome.wustl.edu	37	chr19	39329199	39329199	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	caagacccgtcttccaacccGtatgactgaccaggcatgat	8	14	1	4			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	19	39329199	39329199	G	T	SNP	HNRNPL	ENST00000221419	human	ensembl	69_37n	-1	known	nonsense	c.1395	p.Y465*	0.938	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	211	0	0	99	42	29.79	-	-	-	T	39329199	G	T	39329199	4	4	753	1	0	0	0	0	0	1	0	0	7321	1140	40	3	390	3	HNRNPL	19	39329199	Nonsense_Mutation	SNP	G	TCGA-E2-A14P-01A-31D-A12B-09		39329199	19799784	65	66078										
BRSK1	0	genome.wustl.edu	37	chr19	55820015	55820015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctgtgcctctaggtcccagcCgtcggttcaagcgagtggtg	14	12	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	19	55820015	55820015	C	T	SNP	BRSK1	ENST00000590333	human	ensembl	69_37n	1	known	missense	c.2146	p.R716C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469	55	0	0	44	10	18.52	-	-	-	T	55820015	C	T	55820015	3	4	753	1	0	0	0	0	1	0	0	0	1531	652	23	1	2168	1	BRSK1	19	55820015	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	16490816	55820015	3308968	66	66079										
DDRGK1	0	genome.wustl.edu	37	chr20	3184039	3184039	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gcctgctcctgccagctcctCattgtgcagtggctcttggc	11	15	2	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	20	3184039	3184039	C	T	SNP	DDRGK1	ENST00000354488	human	ensembl	69_37n	-1	known	missense	c.115	p.E39K	0.610	NULL	pfam_DDRGK_dom-contain	-	no_errors	DDRGK1	HGNC	ENSG00000198171	13	0	0	13	9	40.91	-	-	-	T	3184039	C	T	3184039	3	4	753	1	0	0	0	0	1	0	0	0	4369	835	29	2	861	2	DDRGK1	20	3184039	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		3184039	59841481	67	66080										
CENPB	0	genome.wustl.edu	37	chr20	3765588	3765588	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ttcctcatcgtcctcttcctCactgtctgaatcagagtcct	5	15	5	2			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	20	3765588	3765588	C	T	SNP	CENPB	ENST00000379751	human	ensembl	69_37n	-1	known	missense	c.1543	p.E515K	1.000	pfam_Centromere_CenpB_dimerisation	pfam_Centromere_CenpB_dimerisation,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	CENPB	HGNC	ENSG00000125817	296	1	0.34	246	47	16.04	-	-	-	T	3765588	C	T	3765588	3	4	753	1	0	0	0	0	1	0	0	0	3256	835	29	2	260	2	CENPB	20	3765588	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	581549	3765588	59259932	68	66081										
PABPC1L	0	genome.wustl.edu	37	chr20	43538932	43538932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gccgcgatgtagccacccggCgctcgctgggctacgcctac	13	17	0	0			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	20	43538932	43538932	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	69_37n	1	known	missense	c.148	p.R50C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104	23	0	0	22	5	18.52	-	-	-	T	43538932	C	T	43538932	3	4	753	1	0	0	0	0	1	0	0	0	11437	768	27	1	150	1	PABPC1L	20	43538932	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	39773344	43538932	19486588	69	66082										
CDH4	0	genome.wustl.edu	37	chr20	59829897	59829897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	ctcaggcccataatgaggatCttacaactagagagacctgc	9	11	2	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	20	59829897	59829897	C	G	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	1	known	missense	c.73	p.L25V	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	183	0	0	259	96	27.04	-	-	-	G	59829897	C	G	59829897	3	3	753	1	0	0	0	0	1	0	0	0	3141	913	32	2	79	2	CDH4	20	59829897	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	16290965	59829897	3195623	70	66083										
ELFN2	0	genome.wustl.edu	37	chr22	37771355	37771355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	gttcccaaagcggttgagcgAggagtagagcacggctttga	15	8	0	3			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	22	37771355	37771355	A	G	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.220	p.S74P	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	461	0	0	219	75	25.51	-	-	-	G	37771355	A	G	37771355	3	3	753	1	0	0	0	0	1	0	0	0	5095	304	11	5	2246	5	ELFN2	22	37771355	Missense_Mutation	SNP	A	TCGA-E2-A14P-01A-31D-A12B-09		37771355	13533211	71	66084										
FAM47C	0	genome.wustl.edu	37	chrX	37028635	37028635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	tgtccagtctccacgcggagCctcctgagagtcgcgtatct	11	14	2	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	X	37028635	37028635	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.2152	p.P718S	0.004	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	141	0	0	106	23	17.69	-	-	-	T	37028635	C	T	37028635	3	4	753	1	0	0	0	0	1	0	0	0	5617	739	26	4	2154	4	FAM47C	23	37028635	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09		37028635	118241925	72	66085										
HNRNPH2	0	genome.wustl.edu	37	chrX	100668219	100668219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.232876712328767	17	0.000477312038574398	2.79656067488644	4.32409381663113	2.52238805970149	0.0108722086529406	0.147680834202443	11	atggaggtcctgctagccagCagctgagtggtggttatgga	16	7	0	1			TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	35a96eee-113b-45cb-a999-81c13545b104	ddf38d71-5acf-4b09-9796-d26fa1089daa	X	100668219	100668219	C	A	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	missense	c.1243	p.Q415K	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	383	1	0.26	250	82	24.7	-	-	-	A	100668219	C	A	100668219	3	1	753	1	0	0	0	0	1	0	0	0	7318	711	25	4	1245	4	HNRNPH2	23	100668219	Missense_Mutation	SNP	C	TCGA-E2-A14P-01A-31D-A12B-09	63639584	100668219	54602341	73	66086										
ATP1A4	0	genome.wustl.edu	37	chr1	160147410	160147410	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gcatccgcctccactgggaaGataaatacttgaatgacctg	9	11	0	3			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	1	160147410	160147410	G	C	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	missense	c.2692	p.D898H	0.116	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	178	0	0	394	99	20.08	-	-	-	C	160147410	G	C	160147410	3	2	754	1	0	0	0	0	1	0	0	0	1135	942	33	2	2762	2	ATP1A4	1	160147410	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		160147410	89103211	1	66087										
CFHR2	0	genome.wustl.edu	37	chr1	196918689	196918689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gggaagttttctattactccTgtgaatataattttgtgtct	8	5	2	1			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	1	196918689	196918689	T	C	SNP	CFHR2	ENST00000367415	human	ensembl	69_37n	1	known	missense	c.163	p.C55R	0.032	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR2	HGNC	ENSG00000080910	249	0	0	306	188	37.9	-	-	-	C	196918689	T	C	196918689	3	2	754	1	0	0	0	0	1	0	0	0	3314	1580	55	5	169	5	CFHR2	1	196918689	Missense_Mutation	SNP	T	TCGA-E2-A14Q-01A-11D-A12B-09	36771279	196918689	52331932	2	66088										
RYR2	0	genome.wustl.edu	37	chr1	237881772	237881772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	ttcttgacagaaagataccgAggatgaagtacgagatataa	10	5	1	5			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	1	237881772	237881772	A	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.10499	p.E3500G	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	83	0	0	194	34	14.91	-	-	-	G	237881772	A	G	237881772	3	3	754	1	0	0	0	0	1	0	0	0	13855	304	11	5	10795	5	RYR2	1	237881772	Missense_Mutation	SNP	A	TCGA-E2-A14Q-01A-11D-A12B-09	40963083	237881772	11368849	3	66089										
IL1RL2	0	genome.wustl.edu	37	chr2	102818091	102818091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	tgagcaatgtctcggcagagGacagagggaactacgcgtgt	15	8	1	3			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	2	102818091	102818091	G	A	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.565	p.D189N	0.340	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	125	0	0	120	41	25.31	-	-	-	A	102818091	G	A	102818091	3	1	754	1	0	0	0	0	1	0	0	0	7718	1174	41	2	579	2	IL1RL2	2	102818091	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		102818091	140381282	4	66090										
PCDHB14	0	genome.wustl.edu	37	chr5	140605357	140605357	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	tgtctgacaggaggttccggGacaaatgagttcaaatttct	11	7	3	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	5	140605357	140605357	G	C	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	silent	c.2280	p.G760	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	142	0	0	230	66	22.3	-	-	-	C	140605357	G	C	140605357	2	2	754	1	0	0	0	0	0	0	0	1	11612	1161	41	2		2	PCDHB14	5	140605357	Silent	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		140605357	40309903	5	66091										
PCDHGB1	0	genome.wustl.edu	37	chr5	140731438	140731438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	agggaccagggctcccccgcGctcagcgccaacgtgagcct	13	17	1	1			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	5	140731438	140731438	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	69_37n	1	known	silent	c.1611	p.A537	0.700	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	18	0	0	25	9	26.47	-	-	-	A	140731438	G	A	140731438	2	1	754	1	0	0	0	0	0	0	0	1	11635	1074	38	1		1	PCDHGB1	5	140731438	Silent	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09	126081	140731438	40183822	6	66092										
KIFC1	0	genome.wustl.edu	37	chr6	33371608	33371608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	aaatgcagaactaaaacggtGccgtgagaggactcaaacgt	11	8	1	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	6	33371608	33371608	G	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.458	p.C153F	0.158	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	70	0	0	84	22	20.75	-	-	-	T	33371608	G	T	33371608	3	4	754	1	0	0	0	0	1	0	0	0	8364	1319	46	4	480	4	KIFC1	6	33371608	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		33371608	137743459	7	66093										
USP49	0	genome.wustl.edu	37	chr6	41773690	41773690	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	ctcggctccttgttctggatGagctccagactccgactaat	9	13	1	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	6	41773690	41773690	G	A	SNP	USP49	ENST00000373009	human	ensembl	69_37n	-1	known	silent	c.1032	p.L344	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP49	HGNC	ENSG00000164663	29	0	0	33	7	17.5	-	-	-	A	41773690	G	A	41773690	2	1	754	1	0	0	0	0	0	0	0	1	17177	1277	45	2		2	USP49	6	41773690	Silent	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09	8402082	41773690	129341377	8	66094										
RBAK	0	genome.wustl.edu	37	chr7	5103484	5103484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gccttgttccttcaagcataAtagctcataattgtgtctca	6	10	3	0			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	7	5103484	5103484	A	G	SNP	RBAK	ENST00000353796	human	ensembl	69_37n	1	known	missense	c.397	p.I133V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	114	0	0	175	70	28.46	-	-	-	G	5103484	A	G	5103484	3	3	754	1	0	0	0	0	1	0	0	0	13183	101	4	5	411	5	RBAK	7	5103484	Missense_Mutation	SNP	A	TCGA-E2-A14Q-01A-11D-A12B-09		5103484	154035179	9	66095										
USP42	0	genome.wustl.edu	37	chr7	6155014	6155014	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	cccatctgagaagatttgtcTtaagtggcaacaaactcata	7	9	3	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	7	6155014	6155014	T	G	SNP	USP42	ENST00000306177	human	ensembl	69_37n	1	known	missense	c.302	p.L101R	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP42	HGNC	ENSG00000106346	112	0	0	177	48	21.33	-	-	-	G	6155014	T	G	6155014	3	3	754	1	0	0	0	0	1	0	0	0	17170	1609	56	5	308	5	USP42	7	6155014	Missense_Mutation	SNP	T	TCGA-E2-A14Q-01A-11D-A12B-09	1051530	6155014	152983649	10	66096										
FAM86B1	0	genome.wustl.edu	37	chr8	12044059	12044059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gtcgctgaagatgtatgcccGggggcggcacatcttgcaga	15	10	1	3			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	8	12044059	12044059	G	A	SNP	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	missense	c.544	p.R182W	0.195	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	124	0	0	172	26	13	-	-	-	A	12044059	G	A	12044059	3	1	754	1	0	0	0	0	1	0	0	0	5689	1115	39	1	460	1	FAM86B1	8	12044059	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		12044059	134319963	11	66097										
RAD54B	0	genome.wustl.edu	37	chr8	95392443	95392443	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	atcctccaatgaggttaagtCctacaccaccagcttttgaa	6	12	0	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	8	95392443	95392443	C	A	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.2177	p.G726V	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	65	0	0	79	28	26.17	-	-	-	A	95392443	C	A	95392443	3	1	754	1	0	0	0	0	1	0	0	0	13075	855	30	2	571	2	RAD54B	8	95392443	Missense_Mutation	SNP	C	TCGA-E2-A14Q-01A-11D-A12B-09	83348384	95392443	50971579	12	66098										
CORO2A	0	genome.wustl.edu	37	chr9	100887118	100887118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	ttccaactgtttggcctggaCctctcgctgggtcaacagct	10	13	2	0			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	9	100887118	100887118	C	T	SNP	CORO2A	ENST00000343933	human	ensembl	69_37n	-1	known	missense	c.1516	p.V506I	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789	88	0	0	96	24	20	-	-	-	T	100887118	C	T	100887118	3	4	754	1	0	0	0	0	1	0	0	0	3786	507	18	4	65	4	CORO2A	9	100887118	Missense_Mutation	SNP	C	TCGA-E2-A14Q-01A-11D-A12B-09		100887118	40326313	13	66099										
MYF6	0	genome.wustl.edu	37	chr12	81101884	81101884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	caaccccaaccagaggctgcCcaaggtggagattctgcgga	12	13	1	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	12	81101884	81101884	C	T	SNP	MYF6	ENST00000228641	human	ensembl	69_37n	1	known	missense	c.386	p.P129L	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_Basic,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF6	HGNC	ENSG00000111046	46	0	0	28	9	24.32	-	-	-	T	81101884	C	T	81101884	3	4	754	1	0	0	0	0	1	0	0	0	10100	623	22	4	388	4	MYF6	12	81101884	Missense_Mutation	SNP	C	TCGA-E2-A14Q-01A-11D-A12B-09		81101884	52750011	14	66100										
CLIP1	0	genome.wustl.edu	37	chr12	122825972	122825972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	ttggaaagcttttccgtggcGgtatacagagcctttatctc	10	9	1	1			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	12	122825972	122825972	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	69_37n	-1	known	silent	c.1779	p.T593	0.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779	64	0	0	111	47	29.56	-	-	-	A	122825972	G	A	122825972	2	1	754	1	0	0	0	0	0	0	0	1	3562	1103	39	1		1	CLIP1	12	122825972	Silent	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09	41724088	122825972	11025923	15	66101										
PSMC6	0	genome.wustl.edu	37	chr14	53173897	53173897	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	ttcccccgcccggacggccaTggccattcccggcatcccct	9	21	0	0			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	14	53173897	53173897	T	C	SNP	PSMC6	ENST00000445930	human	ensembl	69_37n	1	known	missense	c.2	p.M1T	1.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519	19	0	0	23	11	32.35	-	-	-	C	53173897	T	C	53173897	3	2	754	1	0	0	0	0	1	0	0	0	12771	1478	51	5	4	5	PSMC6	14	53173897	Missense_Mutation	SNP	T	TCGA-E2-A14Q-01A-11D-A12B-09		53173897	54175643	16	66102										
POMT2	0	genome.wustl.edu	37	chr14	77757676	77757676	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	cctgagtttgtgttatgtttCttgataatccacaggttgtt	9	6	1	2			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	14	77757676	77757676	C	T	SNP	POMT2	ENST00000261534	human	ensembl	69_37n	-1	known	silent	c.1164	p.K388	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR,superfamily_MIR,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830	136	0	0	191	63	24.71	-	-	-	T	77757676	C	T	77757676	2	4	754	1	0	0	0	0	0	0	0	1	12320	912	32	2		2	POMT2	14	77757676	Silent	SNP	C	TCGA-E2-A14Q-01A-11D-A12B-09	24583779	77757676	29591864	17	66103										
EML5	0	genome.wustl.edu	37	chr14	89094085	89094085	+	Frame_Shift_Del	DEL	C	C	-													0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	tgaagctgactgaacatactCcctttgaatggtagcatctt							TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	14	89094085	89094085	C	-	DEL	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	frame_shift_del	c.4436	p.G1479fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	100	0	0	162	46	21.5	-	-	-	-	89094085	C	-	89094085	7	5	754	1	0	1	0	1	0	0	0	0	5137	855	30	0	1541	0	EML5	14	89094085	Frame_Shift_Del	DEL	C	TCGA-E2-A14Q-01A-11D-A12B-09	11336409	89094085	18255455	18	66104										
KIAA0664	0	genome.wustl.edu	37	chr17	2598235	2598235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gggtcatgacagcccaggctGtgttatctgcagcccccggg	14	13	2	1			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	17	2598235	2598235	G	A	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.2651	p.T884I	0.993	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	66	0	0	51	25	32.89	-	-	-	A	2598235	G	A	2598235	3	1	754	1	0	0	0	0	1	0	0	0	8241	1377	48	4	1322	4	KIAA0664	17	2598235	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		2598235	78596975	19	66105										
RGS9	0	genome.wustl.edu	37	chr17	63221255	63221255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	cctcacccagccgcttcatcCggcgacccagcaccaccatc	6	22	2	0			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	17	63221255	63221255	C	T	SNP	RGS9	ENST00000262406	human	ensembl	69_37n	1	known	missense	c.1543	p.R515W	0.588	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS9	HGNC	ENSG00000108370	174	0	0	159	66	29.33	-	-	-	T	63221255	C	T	63221255	3	4	754	1	0	0	0	0	1	0	0	0	13397	643	23	1	1668	1	RGS9	17	63221255	Missense_Mutation	SNP	C	TCGA-E2-A14Q-01A-11D-A12B-09	60623020	63221255	17973955	20	66106										
FAM69C	0	genome.wustl.edu	37	chr18	72114052	72114053	+	Frame_Shift_Ins	INS	-	-	C													0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	gcccgcggccaggaactccaINSccgcgtagaagtggccgcag							TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	18	72114052	72114053	-	C	INS	FAM69C	ENST00000343998	human	ensembl	69_37n	-1	known	frame_shift_ins	c.665_664	p.V222fs	1.000:1.000	superfamily_Kinase-like_dom	pfam_Uncharacterised_FAM69,superfamily_Kinase-like_dom	-	no_errors	FAM69C	HGNC	ENSG00000187773	56	0	0	39	12	23.53	-	-	-	C	72114053	-	C	72114052	7	5	754	1	0	1	1	0	0	0	0	0	5649	159	6	0	606	0	FAM69C	18	72114052	Frame_Shift_Ins	INS	-	TCGA-E2-A14Q-01A-11D-A12B-09		72114052	5963196	21	66107										
ZHX3	0	genome.wustl.edu	37	chr20	39832443	39832443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.136363636363636	3	0.632966764782344	1.53846153846154	3.33333333333333	1.21212121212121	1	1	0	tgtattgaacatctttttccGggcatcctcaatctcctcag	6	12	4	1			TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee51cf6d-351f-48f8-ab93-639c27c50e9f	323a490c-8dd7-4715-b083-f238c565b60d	20	39832443	39832443	G	A	SNP	ZHX3	ENST00000373263	human	ensembl	69_37n	-1	known	missense	c.1114	p.R372W	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ZHX3	HGNC	ENSG00000174306	104	0	0	130	43	24.86	-	-	-	A	39832443	G	A	39832443	3	1	754	1	0	0	0	0	1	0	0	0	17773	1115	39	1	1764	1	ZHX3	20	39832443	Missense_Mutation	SNP	G	TCGA-E2-A14Q-01A-11D-A12B-09		39832443	23193077	22	66108										
CCNL2	0	genome.wustl.edu	37	chr1	1328842	1328842	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gaaggtacataacgattatcTggaagatacgggtcaggcag	13	6	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	1328842	1328842	T	C	SNP	CCNL2	ENST00000400809	human	ensembl	69_37n	-1	known	splice_site	c.595-2	e5-2	1.000	-	-	-	no_errors	CCNL2	HGNC	ENSG00000221978	87	0	0	32	100	75.76	-	-	-	C	1328842	T	C	1328842	5	2	755	1	0	0	0	0	0	0	1	0	2961	1594	55	5	1023	5	CCNL2	1	1328842	Splice_Site	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09		1328842	247921779	1	66109										
CROCC	0	genome.wustl.edu	37	chr1	17266458	17266458	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggaagcagcttagcgacagcGagagcgagcggcgggcccta	17	11	0	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	17266458	17266458	G	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	nonsense	c.1678	p.E560*	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	14	0	0	23	14	37.84	-	-	-	T	17266458	G	T	17266458	4	4	755	1	0	0	0	0	0	1	0	0	3923	1059	37	3	1728	3	CROCC	1	17266458	Nonsense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	15937616	17266458	231984163	2	66110										
ZNF642	0	genome.wustl.edu	37	chr1	40945155	40945155	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgtgactaaaatgtttgaagGagaaggtgagaatggactga	14	2	0	5			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	40945155	40945155	G	C	SNP	ZNF642	ENST00000372705	human	ensembl	69_37n	1	known	missense	c.122	p.G41A	1.000	superfamily_Retrov_capsid_C	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF642	HGNC	ENSG00000187815	137	0	0	223	42	15.79	-	-	-	C	40945155	G	C	40945155	3	2	755	1	0	0	0	0	1	0	0	0	18154	1174	41	2	124	2	ZNF642	1	40945155	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	23678697	40945155	208305466	3	66111										
KCND3	0	genome.wustl.edu	37	chr1	112524764	112524764	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	accacgttggtgatgaccgaGacagcgatgaagaagccagt	13	9	0	5			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	112524764	112524764	G	A	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	silent	c.585	p.V195	0.991	prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	27	0	0	26	20	43.48	-	-	-	A	112524764	G	A	112524764	2	1	755	1	0	0	0	0	0	0	0	1	8074	929	33	2		2	KCND3	1	112524764	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	71579609	112524764	136725857	4	66112										
CASQ2	0	genome.wustl.edu	37	chr1	116280870	116280870	+	Frame_Shift_Del	DEL	G	G	-													0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gagtcctcactcttgaaaaaGccaatgagtttgatgtagtc							TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	116280870	116280870	G	-	DEL	CASQ2	ENST00000261448	human	ensembl	69_37n	-1	known	frame_shift_del	c.507	p.F171fs	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729	206	0	0	246	126	32.31	-	-	-	-	116280870	G	-	116280870	7	5	755	1	0	1	0	1	0	0	0	0	2706	958	34	0	724	0	CASQ2	1	116280870	Frame_Shift_Del	DEL	G	TCGA-E2-A14R-01A-11D-A10Y-09	3756106	116280870	132969751	5	66113										
PRUNE	0	genome.wustl.edu	37	chr1	151006389	151006389	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	caaggcaacacccaggtctcTcgaaagaaacttctgcccct	7	15	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	151006389	151006389	T	C	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	1	known	silent	c.1041	p.S347	0.998	pfam_DHHA2	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	79	0	0	101	153	59.77	-	-	-	C	151006389	T	C	151006389	2	2	755	1	0	0	0	0	0	0	0	1	12720	1538	54	5		5	PRUNE	1	151006389	Silent	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	34725519	151006389	98244232	6	66114										
LCE2B	0	genome.wustl.edu	37	chr1	152659424	152659424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccccctaaatgcctgccccaGtgcccagctccatgttcccc	6	21	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	152659424	152659424	G	T	SNP	LCE2B	ENST00000368780	human	ensembl	69_37n	1	known	missense	c.105	p.Q35H	0.360	NULL	NULL	-	no_errors	LCE2B	HGNC	ENSG00000159455	273	0	0	670	155	18.77	-	-	-	T	152659424	G	T	152659424	3	4	755	1	0	0	0	0	1	0	0	0	8720	1020	36	4	107	4	LCE2B	1	152659424	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	1653035	152659424	96591197	7	66115										
NES	0	genome.wustl.edu	37	chr1	156640029	156640029	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgagggggtggcctctgctcTccagtggggtcccacctggg	17	12	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	156640029	156640029	T	C	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	silent	c.3951	p.G1317	0.971	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	31	0	0	56	9	13.85	-	-	-	C	156640029	T	C	156640029	2	2	755	1	0	0	0	0	0	0	0	1	10409	1538	54	5		5	NES	1	156640029	Silent	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	3980605	156640029	92610592	8	66116										
CASQ1	0	genome.wustl.edu	37	chr1	160167383	160167383	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	accctgaggaaactgaagccGgagagtatgtatgagacctg	13	8	0	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	160167383	160167383	G	A	SNP	CASQ1	ENST00000368078	human	ensembl	69_37n	1	known	silent	c.807	p.P269	0.231	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318	123	0	0	109	120	52.4	-	-	-	A	160167383	G	A	160167383	2	1	755	1	0	0	0	0	0	0	0	1	2705	1103	39	1		1	CASQ1	1	160167383	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	3527354	160167383	89083238	9	66117										
NME7	0	genome.wustl.edu	37	chr1	169292459	169292459	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttgttgcctataaataaatcTtccaagtgcaggttatcata	6	7	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	169292459	169292459	T	G	SNP	NME7	ENST00000367811	human	ensembl	69_37n	-1	known	missense	c.174	p.E58D	0.999	smart_Uncharacterised_DM10,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	322	1	0.31	496	178	26.37	-	-	-	G	169292459	T	G	169292459	3	3	755	1	0	0	0	0	1	0	0	0	10568	1606	56	5	996	5	NME7	1	169292459	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	9125076	169292459	79958162	10	66118										
SEC16B	0	genome.wustl.edu	37	chr1	177917055	177917055	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccaagtgaggcctccagtctCcccactgcttttctccacaa	6	17	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	177917055	177917055	C	G	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	missense	c.1568	p.G523A	1.000	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	91	0	0	76	21	20.19	-	-	-	G	177917055	C	G	177917055	3	3	755	1	0	0	0	0	1	0	0	0	14075	855	30	2	1670	2	SEC16B	1	177917055	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	8624596	177917055	71333566	11	66119										
OBSCN	0	genome.wustl.edu	37	chr1	228506947	228506947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggccaggcacctcaccactgGccagcaaggtgagccccccc	11	19	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	228506947	228506947	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.14494	p.A4832T	0.375	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	26	0	0	53	7	11.67	-	-	-	A	228506947	G	A	228506947	3	1	755	1	0	0	0	0	1	0	0	0	10885	1203	42	4	14704	4	OBSCN	1	228506947	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	50589892	228506947	20743674	12	66120										
OBSCN	0	genome.wustl.edu	37	chr1	228509882	228509882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ctgcccctgtggtgcctccaGagccattgcccagcctactg	10	17	0	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	228509882	228509882	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.15340	p.E5114K	0.003	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	35	0	0	87	24	21.62	-	-	-	A	228509882	G	A	228509882	3	1	755	1	0	0	0	0	1	0	0	0	10885	943	33	2	15554	2	OBSCN	1	228509882	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	2935	228509882	20740739	13	66121										
GPR137B	0	genome.wustl.edu	37	chr1	236341802	236341802	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgctggtaaagacgggaaatTgggagaggaaggttatcgtc	16	4	0	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	1	236341802	236341802	T	C	SNP	GPR137B	ENST00000366592	human	ensembl	69_37n	1	known	missense	c.553	p.W185R	0.449	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585	278	0	0	421	194	31.54	-	-	-	C	236341802	T	C	236341802	3	2	755	1	0	0	0	0	1	0	0	0	6696	1812	63	5	563	5	GPR137B	1	236341802	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	7831920	236341802	12908819	14	66122										
USP34	0	genome.wustl.edu	37	chr2	61505421	61505421	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gatgatcaaggatctccctaCtacaaaaaagaaaaaaaata	5	7	2	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	2	61505421	61505421	C	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	splice_site	c.5313-1	e41-1	1.000	-	-	-	no_errors	USP34	HGNC	ENSG00000115464	223	0	0	310	326	51.26	-	-	-	A	61505421	C	A	61505421	5	1	755	1	0	0	0	0	0	0	1	0	17162	579	20	4	5488	4	USP34	2	61505421	Splice_Site	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		61505421	181693952	15	66123										
ADRA2B	0	genome.wustl.edu	37	chr2	96780849	96780849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	accactgcccacctatagcaCccacgcccctgcccaggagc	7	21	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	2	96780849	96780849	C	T	SNP	ADRA2B	ENST00000409345	human	ensembl	69_37n	-1	known	missense	c.1040	p.G347D	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2B	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2B,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA2B	HGNC	ENSG00000222040	33	0	0	108	14	11.38	-	-	-	T	96780849	C	T	96780849	3	4	755	1	0	0	0	0	1	0	0	0	338	507	18	4	307	4	ADRA2B	2	96780849	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	35275428	96780849	146418524	16	66124										
NEB	0	genome.wustl.edu	37	chr2	152527544	152527544	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggaaagcactcacatcacttAgctgctttgtgttatgctga	9	9	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	2	152527544	152527544	A	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.4499	p.L1500Q	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	145	0	0	127	64	33.51	-	-	-	T	152527544	A	T	152527544	3	4	755	1	0	0	0	0	1	0	0	0	10374	420	15	5	21767	5	NEB	2	152527544	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	55746695	152527544	90671829	17	66125										
SLC6A1	0	genome.wustl.edu	37	chr3	11070440	11070440	+	Frame_Shift_Del	DEL	G	G	-													0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggccccgggctggcgttcctGgcatacccagaggcggtgac							TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	11070440	11070440	G	-	DEL	SLC6A1	ENST00000287766	human	ensembl	69_37n	1	known	frame_shift_del	c.1098	p.A367fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	-	no_errors	SLC6A1	HGNC	ENSG00000157103	66	0	0	94	79	45.4	-	-	-	-	11070440	G	-	11070440	7	5	755	1	0	1	0	1	0	0	0	0	14762	1335	47	0	1132	0	SLC6A1	3	11070440	Frame_Shift_Del	DEL	G	TCGA-E2-A14R-01A-11D-A10Y-09		11070440	186951990	18	66126										
DHX30	0	genome.wustl.edu	37	chr3	47889002	47889002	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aggaggccctgggcatgcacGagagcaagtacctcatcctg	13	12	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	47889002	47889002	G	T	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	nonsense	c.2086	p.E696*	0.877	smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	43	0	0	31	16	34.04	-	-	-	T	47889002	G	T	47889002	4	4	755	1	0	0	0	0	0	1	0	0	4540	1059	37	3	2139	3	DHX30	3	47889002	Nonsense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	36818562	47889002	150133428	19	66127										
TMEM108	0	genome.wustl.edu	37	chr3	133109180	133109180	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gtcccttgaaacctctgaggTaatgagcttgaaagtgctgg	12	8	1	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	133109180	133109180	T	A	SNP	TMEM108	ENST00000321871	human	ensembl	69_37n	1	known	splice_site	c.1605+2	e3+2	1.000	-	-	-	no_errors	TMEM108	HGNC	ENSG00000144868	94	0	0	161	69	30	-	-	-	A	133109180	T	A	133109180	5	1	755	1	0	0	0	0	0	0	1	0	16119	1652	57	5	1617	5	TMEM108	3	133109180	Splice_Site	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	85220178	133109180	64913250	20	66128										
GK5	0	genome.wustl.edu	37	chr3	141890304	141890304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aatctctttcttcatcatctCatataactgtttgtttctag	3	9	6	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	141890304	141890304	C	G	SNP	GK5	ENST00000392993	human	ensembl	69_37n	-1	known	missense	c.1264	p.E422Q	1.000	pfam_Carb_kinase_FGGY_C	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C	-	no_errors	GK5	HGNC	ENSG00000175066	233	1	0.43	683	143	17.31	-	-	-	G	141890304	C	G	141890304	3	3	755	1	0	0	0	0	1	0	0	0	6474	835	29	2	337	2	GK5	3	141890304	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	8781124	141890304	56132126	21	66129										
AP2M1	0	genome.wustl.edu	37	chr3	183896904	183896904	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttgtgctcatatatgagctgCtggatggtgaggctggcggg	17	6	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	183896904	183896904	C	A	SNP	AP2M1	ENST00000292807	human	ensembl	69_37n	1	known	missense	c.334	p.L112M	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP2M1	HGNC	ENSG00000161203	113	0	0	58	59	50.43	-	-	-	A	183896904	C	A	183896904	3	1	755	1	0	0	0	0	1	0	0	0	743	796	28	4	340	4	AP2M1	3	183896904	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	42006600	183896904	14125526	22	66130										
ATP13A4	0	genome.wustl.edu	37	chr3	193188758	193188758	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aatctccaggcaccaggacgCgtgattccagctcttgaact	9	13	2	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	193188758	193188758	C	G	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	missense	c.833	p.R278P	0.294	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	102	0	0	96	21	17.95	-	-	-	G	193188758	C	G	193188758	3	3	755	1	0	0	0	0	1	0	0	0	1130	768	27	3	2845	3	ATP13A4	3	193188758	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	9291854	193188758	4833672	23	66131										
MUC20	0	genome.wustl.edu	37	chr3	195452951	195452951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccacagagtcagctgcacctGatgccacggttgggacccca	11	15	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	3	195452951	195452951	G	C	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.1477	p.D493H	0.004	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	40	0	0	29	5	14.71	-	-	-	C	195452951	G	C	195452951	3	2	755	1	0	0	0	0	1	0	0	0	10048	1290	45	2	974	2	MUC20	3	195452951	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	2264193	195452951	2569479	24	66132										
PRKG2	0	genome.wustl.edu	37	chr4	82061764	82061764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tcctgctgcttggtgtcaacTatgtgcttcttccttataca	7	11	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	4	82061764	82061764	T	C	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	missense	c.1467	p.I489M	0.028	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	228	0	0	359	78	17.85	-	-	-	C	82061764	T	C	82061764	3	2	755	1	0	0	0	0	1	0	0	0	12604	1512	53	5	853	5	PRKG2	4	82061764	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09		82061764	109092512	25	66133										
NDST4	0	genome.wustl.edu	37	chr4	115791933	115791933	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttaaatgttacctgccatagAgggtctttctgctcagggaa	10	8	3	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	4	115791933	115791933	A	G	SNP	NDST4	ENST00000264363	human	ensembl	69_37n	-1	known	silent	c.1710	p.P570	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST4	HGNC	ENSG00000138653	146	0	0	136	175	56.09	-	-	-	G	115791933	A	G	115791933	2	3	755	1	0	0	0	0	0	0	0	1	10330	291	11	5		5	NDST4	4	115791933	Silent	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	33730169	115791933	75362343	26	66134										
BRD9	0	genome.wustl.edu	37	chr5	865540	865540	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gcatctcacccaggtggtgcTggtccctctcggaggcgttg	14	13	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	5	865540	865540	T	A	SNP	BRD9	ENST00000467963	human	ensembl	69_37n	-1	known	missense	c.1682	p.Q561L	0.993	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310	51	0	0	69	25	26.6	-	-	-	A	865540	T	A	865540	3	1	755	1	0	0	0	0	1	0	0	0	1515	1580	55	5	119	5	BRD9	5	865540	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09		865540	180049720	27	66135										
MTMR12	0	genome.wustl.edu	37	chr5	32233994	32233994	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gcaccgaccaatcccacacgGtgagcagattcaaaggcttg	10	13	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	5	32233994	32233994	G	C	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	missense	c.1559	p.T520S	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	152	0	0	245	85	25.76	-	-	-	C	32233994	G	C	32233994	3	2	755	1	0	0	0	0	1	0	0	0	10013	1261	44	4	692	4	MTMR12	5	32233994	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	31368454	32233994	148681266	28	66136										
ARAP3	0	genome.wustl.edu	37	chr5	141051178	141051178	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgggtactgagggtggggctTccggaagagacccagacggt	18	8	0	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	5	141051178	141051178	T	C	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.1813	p.K605E	0.977	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	28	0	0	20	8	28.57	-	-	-	C	141051178	T	C	141051178	3	2	755	1	0	0	0	0	1	0	0	0	842	1792	62	5	2909	5	ARAP3	5	141051178	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	108817184	141051178	39864082	29	66137										
HLA-DMB	0	genome.wustl.edu	37	chr6	32905029	32905029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccccgtaagagggggttaagGctaaatgggagagggtctgg	18	6	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	6	32905029	32905029	G	T	SNP	HLA-DMB	ENST00000418107	human	ensembl	69_37n	-1	known	missense	c.542	p.A181D	0.826	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_MHC_II_b_N,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DMB	HGNC	ENSG00000242574	86	0	0	119	42	25.93	-	-	-	T	32905029	G	T	32905029	3	4	755	1	0	0	0	0	1	0	0	0	7250	1203	42	4	265	4	HLA-DMB	6	32905029	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09		32905029	138210038	30	66138										
LEMD2	0	genome.wustl.edu	37	chr6	33752167	33752167	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aattgtagagttcatgcagcAgctccagcaaggctgccttc	10	11	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	6	33752167	33752167	A	G	SNP	LEMD2	ENST00000293760	human	ensembl	69_37n	-1	known	missense	c.815	p.L272P	0.999	pfam_Inner-Nucl-membr_MAN1	pfam_Inner-Nucl-membr_MAN1,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM	-	no_errors	LEMD2	HGNC	ENSG00000161904	60	0	0	49	26	34.67	-	-	-	G	33752167	A	G	33752167	3	3	755	1	0	0	0	0	1	0	0	0	8774	188	7	5	724	5	LEMD2	6	33752167	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	847138	33752167	137362900	31	66139										
DST	0	genome.wustl.edu	37	chr6	56473155	56473155	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggccaattcatttgtaatcaAttcttgctgcaaggaagatg	9	7	3	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	6	56473155	56473155	A	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.6172	p.L2058V	0.046	pfam_Plectin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	222	0	0	247	121	32.88	-	-	-	C	56473155	A	C	56473155	3	2	755	1	0	0	0	0	1	0	0	0	4818	116	4	5		5	DST	6	56473155	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	22720988	56473155	114641912	32	66140										
FAM46A	0	genome.wustl.edu	37	chr6	82461445	82461445	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cagaagatgaggtccaggtcCttgtagcccaggccgctgtc	13	12	0	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	6	82461445	82461445	C	G	SNP	FAM46A	ENST00000369756	human	ensembl	69_37n	-1	known	missense	c.657	p.K219N	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46A	HGNC	ENSG00000112773	15	0	0	16	17	51.52	-	-	-	G	82461445	C	G	82461445	3	3	755	1	0	0	0	0	1	0	0	0	5611	680	24	4	922	4	FAM46A	6	82461445	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	25988290	82461445	88653622	33	66141										
FIG4	0	genome.wustl.edu	37	chr6	110107520	110107520	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cttagttatctgtgctgtgaActtaaagaagttgatagtga	10	4	1	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	6	110107520	110107520	A	T	SNP	FIG4	ENST00000230124	human	ensembl	69_37n	1	known	missense	c.1964	p.N655I	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367	179	0	0	347	68	16.39	-	-	-	T	110107520	A	T	110107520	3	4	755	1	0	0	0	0	1	0	0	0	5934	43	2	5	2034	5	FIG4	6	110107520	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	27646075	110107520	61007547	34	66142										
ABCA13	0	genome.wustl.edu	37	chr7	48338055	48338055	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cgaatgagactatccatagcAttctagaagcaaatatttcc	6	9	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	48338055	48338055	A	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.9292	p.I3098F	0.006	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	281	0	0	343	225	39.54	-	-	-	T	48338055	A	T	48338055	3	4	755	1	0	0	0	0	1	0	0	0	31	217	8	5	9211	5	ABCA13	7	48338055	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09		48338055	110800608	35	66143										
ASL	0	genome.wustl.edu	37	chr7	65547366	65547366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccactacaggtggctgaggaGtgggcccagggcaccttcaa	14	12	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	65547366	65547366	G	C	SNP	ASL	ENST00000304874	human	ensembl	69_37n	1	known	missense	c.219	p.E73D	1.000	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Argininosuccinate_lyase	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522	64	0	0	104	24	18.46	-	-	-	C	65547366	G	C	65547366	3	2	755	1	0	0	0	0	1	0	0	0	1048	1020	36	4	229	4	ASL	7	65547366	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	17209311	65547366	93591297	36	66144										
AZGP1	0	genome.wustl.edu	37	chr7	99565858	99565858	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cctcctccaggtaagccttgGcccgctgcacgtagactggt	11	15	0	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	99565858	99565858	G	A	SNP	AZGP1	ENST00000292401	human	ensembl	69_37n	-1	known	missense	c.533	p.A178V	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	AZGP1	HGNC	ENSG00000160862	173	0	0	175	156	46.85	-	-	-	A	99565858	G	A	99565858	3	1	755	1	0	0	0	0	1	0	0	0	1243	1203	42	4	371	4	AZGP1	7	99565858	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	34018492	99565858	59572805	37	66145										
C7orf60	0	genome.wustl.edu	37	chr7	112462311	112462311	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aacaaccacatggaaaagctCtccaggaagagaatcaatag	8	9	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	112462311	112462311	C	A	SNP	C7orf60	ENST00000297145	human	ensembl	69_37n	-1	known	nonsense	c.706	p.E236*	1.000	pfam_DUF3321	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603	72	0	0	105	67	38.95	-	-	-	A	112462311	C	A	112462311	4	1	755	1	0	0	0	0	0	1	0	0	2430	922	32	2	515	2	C7orf60	7	112462311	Nonsense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	12896453	112462311	46676352	38	66146										
CPA1	0	genome.wustl.edu	37	chr7	130023284	130023284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ctggatcgacacgggcatccAttcccgggagtgggtcaccc	13	14	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	130023284	130023284	A	G	SNP	CPA1	ENST00000011292	human	ensembl	69_37n	1	known	missense	c.536	p.H179R	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	94	0	0	132	90	40.54	-	-	-	G	130023284	A	G	130023284	3	3	755	1	0	0	0	0	1	0	0	0	3819	217	8	5	554	5	CPA1	7	130023284	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	17560973	130023284	29115379	39	66147										
GALNTL5	0	genome.wustl.edu	37	chr7	151716746	151716746	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tttaggagcagttttttcttCgaaagcctggtctgaaatat	9	6	2	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	7	151716746	151716746	C	T	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	nonsense	c.1192	p.R398*	0.001	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	178	0	0	62	136	68.34	-	-	-	T	151716746	C	T	151716746	4	4	755	1	0	0	0	0	0	1	0	0	6274	876	31	1	1222	1	GALNTL5	7	151716746	Nonsense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	21693462	151716746	7421917	40	66148										
SLCO5A1	0	genome.wustl.edu	37	chr8	70588856	70588856	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggacgtaccaagtgttcgcaAcaaaacaaactgcattccca	7	12	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	8	70588856	70588856	A	G	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	silent	c.2077	p.L693	0.573	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	131	0	0	211	39	15.6	-	-	-	G	70588856	A	G	70588856	2	3	755	1	0	0	0	0	0	0	0	1	14820	40	2	5		5	SLCO5A1	8	70588856	Silent	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09		70588856	75775166	41	66149										
PFKP	0	genome.wustl.edu	37	chr10	3178021	3178021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggcagagctgaagaagcaaaCggattttgagtaagttggct	14	5	0	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	3178021	3178021	C	T	SNP	PFKP	ENST00000381125	human	ensembl	69_37n	1	known	missense	c.2216	p.T739M	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	167	0	0	392	64	14.04	-	-	-	T	3178021	C	T	3178021	3	4	755	1	0	0	0	0	1	0	0	0	11840	536	19	1	2298	1	PFKP	10	3178021	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		3178021	132356726	42	66150										
NEBL	0	genome.wustl.edu	37	chr10	21097581	21097581	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cagtgtcgcctatagtgactCgccttttctatattggaggg	11	9	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	21097581	21097581	C	A	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	silent	c.2619	p.A873	0.749	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	57	0	0	82	19	18.81	-	-	-	A	21097581	C	A	21097581	2	1	755	1	0	0	0	0	0	0	0	1	10375	871	31	3		3	NEBL	10	21097581	Silent	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	17919560	21097581	114437166	43	66151										
HNRNPF	0	genome.wustl.edu	37	chr10	43883017	43883017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gaagccatcgttggcgctgtCggcactgttgggaccactgt	14	11	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	43883017	43883017	C	T	SNP	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	missense	c.316	p.D106N	0.978	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	153	1	0.65	300	79	20.84	-	-	-	T	43883017	C	T	43883017	3	4	755	1	0	0	0	0	1	0	0	0	7316	884	31	1	935	1	HNRNPF	10	43883017	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	22785436	43883017	91651730	44	66152										
FAM190B	0	genome.wustl.edu	37	chr10	86198279	86198279	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cccttccagaggctctccctAtagagaatctcctttgggtc	8	14	2	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	86198279	86198279	A	T	SNP	FAM190B	ENST00000372088	human	ensembl	69_37n	1	known	missense	c.1880	p.Y627F	1.000	NULL	NULL	-	no_errors	FAM190B	HGNC	ENSG00000107771	212	0	0	236	66	21.85	-	-	-	T	86198279	A	T	86198279	3	4	755	1	0	0	0	0	1	0	0	0	5564	449	16	5	1898	5	FAM190B	10	86198279	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	42315262	86198279	49336468	45	66153										
GBF1	0	genome.wustl.edu	37	chr10	104128052	104128052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gtggaatgtgctgcttcatcGaggtgccacccctgagggca	14	11	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	104128052	104128052	G	T	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.2717	p.R906L	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	205	0	0	154	83	35.02	-	-	-	T	104128052	G	T	104128052	3	4	755	1	0	0	0	0	1	0	0	0	6321	1058	37	3	2799	3	GBF1	10	104128052	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	17929773	104128052	31406695	46	66154										
TDRD1	0	genome.wustl.edu	37	chr10	115986919	115986919	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cagaatgtaatgctttctgtGaaaggaattacaaagaatgt	9	4	1	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	10	115986919	115986919	G	C	SNP	TDRD1	ENST00000251864	human	ensembl	69_37n	1	known	silent	c.3264	p.V1088	1.000	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	91	0	0	76	39	33.91	-	-	-	C	115986919	G	C	115986919	2	2	755	1	0	0	0	0	0	0	0	1	15825	1277	45	2		2	TDRD1	10	115986919	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	11858867	115986919	19547828	47	66155										
MUC2	0	genome.wustl.edu	37	chr11	1101932	1101932	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	agtccaagggggtgtgtgttCacgggaatgctgagtaccag	16	7	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	1101932	1101932	C	A	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	missense	c.7696	p.H2566N	0.092	smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	92	0	0	59	35	37.23	-	-	-	A	1101932	C	A	1101932	3	1	755	1	0	0	0	0	1	0	0	0	10047	826	29	2	7858	2	MUC2	11	1101932	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		1101932	133904584	48	66156										
KRTAP5-4	0	genome.wustl.edu	37	chr11	1643059	1643059	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cccacaggagacacagccccCcttggaacccccacaagagc	8	19	0	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	1643059	1643059	C	A	SNP	KRTAP5-4	ENST00000399682	human	ensembl	69_37n	-1	known	missense	c.265	p.G89W	0.633	NULL	NULL	-	no_errors	KRTAP5-4	HGNC	ENSG00000241598	103	0	0	130	35	21.21	-	-	-	A	1643059	C	A	1643059	3	1	755	1	0	0	0	0	1	0	0	0	8617	623	22	4	425	4	KRTAP5-4	11	1643059	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	541127	1643059	133363457	49	66157										
DKK3	0	genome.wustl.edu	37	chr11	12023920	12023920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgttggtctcattgtgatagCtgggaggtaagtttgccagg	15	5	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	12023920	12023920	C	T	SNP	DKK3	ENST00000326932	human	ensembl	69_37n	-1	known	missense	c.278	p.S93N	0.978	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165	427	0	0	378	213	36.04	-	-	-	T	12023920	C	T	12023920	3	4	755	1	0	0	0	0	1	0	0	0	4582	797	28	4	798	4	DKK3	11	12023920	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	10380861	12023920	122982596	50	66158										
EIF3M	0	genome.wustl.edu	37	chr11	32608625	32608625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	agaagagaactcggaaggtgGacttcatgttgatttagctc	12	6	1	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	32608625	32608625	G	C	SNP	EIF3M	ENST00000531120	human	ensembl	69_37n	1	known	missense	c.110	p.G37A	1.000	NULL	pfam_PCI_dom,superfamily_ARM-type_fold,smart_PCI_dom	-	no_errors	EIF3M	HGNC	ENSG00000149100	271	0	0	96	178	64.96	-	-	-	C	32608625	G	C	32608625	3	2	755	1	0	0	0	0	1	0	0	0	5060	1174	41	2	116	2	EIF3M	11	32608625	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	20584705	32608625	102397891	51	66159										
FOLH1	0	genome.wustl.edu	37	chr11	49190796	49190796	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gccacgccacgctcttgaagGagtcttgaattctcctataa	8	12	3	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	49190796	49190796	G	A	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.1323	p.L441	0.998	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	278	0	0	281	153	35.25	-	-	-	A	49190796	G	A	49190796	2	1	755	1	0	0	0	0	0	0	0	1	6025	1161	41	2		2	FOLH1	11	49190796	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	16582171	49190796	85815720	52	66160										
RASGRP2	0	genome.wustl.edu	37	chr11	64503109	64503109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cagtaccgggggccggggtgGtggggtgcaactcgtggggc	22	9	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	64503109	64503109	G	A	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.1201	p.P401S	0.804	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	73	0	0	69	29	29.59	-	-	-	A	64503109	G	A	64503109	3	1	755	1	0	0	0	0	1	0	0	0	13158	1261	44	4	652	4	RASGRP2	11	64503109	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	15312313	64503109	70503407	53	66161										
MRPL49	0	genome.wustl.edu	37	chr11	64889852	64889852	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgttccgggctacgctgcggGgatggagaaccggtgtccag	17	10	0	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	64889852	64889852	G	C	SNP	MRPL49	ENST00000279242	human	ensembl	69_37n	1	known	missense	c.34	p.G12R	0.000	NULL	pfam_Ribosomal_L49/IMG2	-	no_errors	MRPL49	HGNC	ENSG00000149792	97	0	0	99	98	49.75	-	-	-	C	64889852	G	C	64889852	3	2	755	1	0	0	0	0	1	0	0	0	9885	1233	43	4	36	4	MRPL49	11	64889852	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	386743	64889852	70116664	54	66162										
RBM14	0	genome.wustl.edu	37	chr11	66391939	66391939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttggcaacagcactggtggcTttgatgggcaagcccgtcag	14	10	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	11	66391939	66391939	T	C	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.592	p.F198L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	44	0	0	41	10	19.61	-	-	-	C	66391939	T	C	66391939	3	2	755	1	0	0	0	0	1	0	0	0	13198	1609	56	5	598	5	RBM14	11	66391939	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	1502087	66391939	68614577	55	66163										
DENND5B	0	genome.wustl.edu	37	chr12	31551140	31551140	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cctgtcagtgaagtgatgctCaatctcctagccgtggtggg	13	10	3	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	12	31551140	31551140	C	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.3330	p.L1110F	0.868	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	159	0	0	289	123	29.85	-	-	-	G	31551140	C	G	31551140	3	3	755	1	0	0	0	0	1	0	0	0	4473	825	29	2	619	2	DENND5B	12	31551140	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		31551140	102300755	56	66164										
UTP20	0	genome.wustl.edu	37	chr12	101723085	101723085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gtctaaagttcttcctttagGtcgtcagcacggtatcttaa	8	9	4	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	12	101723085	101723085	G	T	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.3275	p.G1092V	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	145	0	0	234	33	12.36	-	-	-	T	101723085	G	T	101723085	3	4	755	1	0	0	0	0	1	0	0	0	17196	1261	44	4	3381	4	UTP20	12	101723085	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	70171945	101723085	32128810	57	66165										
GALNT9	0	genome.wustl.edu	37	chr12	132862937	132862937	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttgccttccgcctcctggccGtcatcacgcagggtggccgc	12	17	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	12	132862937	132862937	G	C	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	missense	c.318	p.D106E	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	21	0	0	26	12	31.58	-	-	-	C	132862937	G	C	132862937	3	2	755	1	0	0	0	0	1	0	0	0	6270	1136	40	3	1533	3	GALNT9	12	132862937	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	31139852	132862937	988958	58	66166										
SUGT1	0	genome.wustl.edu	37	chr13	53241054	53241054	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tttaaagtactttcaacaaaGgtaagaccattgaaaagttt	6	5	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	13	53241054	53241054	G	C	SNP	SUGT1	ENST00000343788	human	ensembl	69_37n	1	known	missense	c.723	p.K241N	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_SGS,pfam_CS_domain,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS-like_domain,pfscan_SGS,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SUGT1	HGNC	ENSG00000165416	173	0	0	354	79	18.24	-	-	-	C	53241054	G	C	53241054	3	2	755	1	0	0	0	0	1	0	0	0	15460	1014	35	4	765	4	SUGT1	13	53241054	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09		53241054	61928824	59	66167										
MBNL2	0	genome.wustl.edu	37	chr13	97928584	97928584	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	aacatgctcacgctctgatgAagaatgcaaatttgctcatc	7	10	3	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	13	97928584	97928584	A	C	SNP	MBNL2	ENST00000376673	human	ensembl	69_37n	1	known	missense	c.95	p.E32A	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793	156	0	0	210	76	26.57	-	-	-	C	97928584	A	C	97928584	3	2	755	1	0	0	0	0	1	0	0	0	9425	246	9	5	97	5	MBNL2	13	97928584	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	44687530	97928584	17241294	60	66168										
PSMB11	0	genome.wustl.edu	37	chr14	23511785	23511785	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gagctgcggcttcgggaactGagggagggtcagctgcccag	18	10	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	14	23511785	23511785	G	T	SNP	PSMB11	ENST00000408907	human	ensembl	69_37n	1	known	silent	c.351	p.L117	0.642	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028	41	0	0	124	43	25.6	-	-	-	T	23511785	G	T	23511785	2	4	755	1	0	0	0	0	0	0	0	1	12756	1277	45	2		2	PSMB11	14	23511785	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09		23511785	83837755	61	66169										
SGPP1	0	genome.wustl.edu	37	chr14	64153112	64153112	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ctaaaggtaatgtatctagaGaaggatctaatactagaccc	8	7	2	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	14	64153112	64153112	G	C	SNP	SGPP1	ENST00000247225	human	ensembl	69_37n	-1	known	missense	c.1037	p.S346C	0.665	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP1	HGNC	ENSG00000126821	146	0	0	43	110	71.9	-	-	-	C	64153112	G	C	64153112	3	2	755	1	0	0	0	0	1	0	0	0	14307	942	33	2	292	2	SGPP1	14	64153112	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	40641327	64153112	43196428	62	66170										
SNAP23	0	genome.wustl.edu	37	chr15	42805156	42805156	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tctgtgttctttcctagtctCtggaaagtacgaggagaatc	10	8	3	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	15	42805156	42805156	C	G	SNP	SNAP23	ENST00000249647	human	ensembl	69_37n	1	known	missense	c.61	p.L21V	1.000	smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_SNAP-25,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP23	HGNC	ENSG00000092531	90	0	0	32	83	72.17	-	-	-	G	42805156	C	G	42805156	3	3	755	1	0	0	0	0	1	0	0	0	14918	912	32	2	67	2	SNAP23	15	42805156	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		42805156	59726236	63	66171										
TP53BP1	0	genome.wustl.edu	37	chr15	43767790	43767790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gactgtcctgaacaagggacCtctgaccagagagctgcagg	13	11	1	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	15	43767790	43767790	C	T	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.1058	p.R353K	0.903	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	88	0	0	23	83	78.3	-	-	-	T	43767790	C	T	43767790	3	4	755	1	0	0	0	0	1	0	0	0	16479	681	24	4	4955	4	TP53BP1	15	43767790	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	962634	43767790	58763602	64	66172										
HOMER2	0	genome.wustl.edu	37	chr15	83523466	83523466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tccactgctccacactggctGccgactcctgcagtgctgtg	10	16	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	15	83523466	83523466	G	T	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	missense	c.614	p.A205E	0.164	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	37	0	0	24	35	59.32	-	-	-	T	83523466	G	T	83523466	3	4	755	1	0	0	0	0	1	0	0	0	7330	1319	46	4	466	4	HOMER2	15	83523466	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	39755676	83523466	19007926	65	66173										
NTRK3	0	genome.wustl.edu	37	chr15	88678619	88678619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gctcctccaggctcaccacaCgtgggggatctgtcaaggga	13	13	3	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	15	88678619	88678619	C	G	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	missense	c.917	p.R306P	0.210	prints_Tyr_kin_neurotrophic_rcpt_3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	56	0	0	63	24	27.59	-	-	-	G	88678619	C	G	88678619	3	3	755	1	0	0	0	0	1	0	0	0	10781	536	19	3	1908	3	NTRK3	15	88678619	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	5155153	88678619	13852773	66	66174										
VWA3A	0	genome.wustl.edu	37	chr16	22161158	22161158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tcagtcatggcaggacacgcTggtggagaccacagatgcag	14	10	2	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	16	22161158	22161158	T	G	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.3035	p.L1012R	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	43	0	0	49	33	39.29	-	-	-	G	22161158	T	G	22161158	3	3	755	1	0	0	0	0	1	0	0	0	17337	1580	55	5	3149	5	VWA3A	16	22161158	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09		22161158	68193595	67	66175										
LAT	0	genome.wustl.edu	37	chr16	28997485	28997485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccccctggccacctgcctacCcacctgtcacctcctaccca	4	24	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	16	28997485	28997485	C	A	SNP	LAT	ENST00000395461	human	ensembl	69_37n	1	known	missense	c.301	p.P101T	0.027	prints_Linker_for_activat_Tcells_prot	prints_Linker_for_activat_Tcells_prot	-	no_errors	LAT	HGNC	ENSG00000213658	35	0	0	50	10	16.67	-	-	-	A	28997485	C	A	28997485	3	1	755	1	0	0	0	0	1	0	0	0	8698	623	22	4	319	4	LAT	16	28997485	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	6836327	28997485	61357268	68	66176										
SRCAP	0	genome.wustl.edu	37	chr16	30733960	30733960	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gcccatgtggccctcatccaGgccgtggccccgacccctgg	12	19	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	16	30733960	30733960	G	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.3783	p.Q1261H	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	52	0	0	67	16	19.28	-	-	-	C	30733960	G	C	30733960	3	2	755	1	0	0	0	0	1	0	0	0	15226	991	35	4	3865	4	SRCAP	16	30733960	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	1736475	30733960	59620793	69	66177										
CDH11	0	genome.wustl.edu	37	chr16	65025783	65025783	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tccttggcctggatcaccacGtggtactcctccttggcctc	9	16	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	16	65025783	65025783	G	C	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.699	p.H233Q	0.358	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	257	0	0	331	119	26.39	-	-	-	C	65025783	G	C	65025783	3	2	755	1	0	0	0	0	1	0	0	0	3126	1136	40	3	1723	3	CDH11	16	65025783	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	34291823	65025783	25328970	70	66178										
FTSJD1	0	genome.wustl.edu	37	chr16	71319781	71319781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	atctgggctgaatgacgcggGacttgctagctgctgaactg	14	9	1	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	16	71319781	71319781	G	C	SNP	FTSJD1	ENST00000338099	human	ensembl	69_37n	-1	known	missense	c.43	p.P15A	0.001	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJD1	HGNC	ENSG00000180917	76	0	0	133	40	23.12	-	-	-	C	71319781	G	C	71319781	3	2	755	1	0	0	0	0	1	0	0	0	6139	1174	41	2	2273	2	FTSJD1	16	71319781	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	6293998	71319781	19034972	71	66179										
TP53	0	genome.wustl.edu	37	chr17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gcaaatttccttccactcggAtaagatgctgaggaggggcc	12	10	0	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	17	7578265	7578265	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.584	p.I195T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	190	0	0	80	180	69.23	-	-	-	G	7578265	A	G	7578265	3	3	755	1	0	0	0	0	1	0	0	0	16477	333	12	5	710	5	TP53	17	7578265	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09		7578265	73616945	72	66180										
STAT5A	0	genome.wustl.edu	37	chr17	40460235	40460235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cctgaaaccattcaccacgcGggatttctccatcaggtccc	7	16	3	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	17	40460235	40460235	G	A	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	missense	c.1946	p.R649Q	0.776	pfam_SH2,smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	127	0	0	94	17	15.18	-	-	-	A	40460235	G	A	40460235	3	1	755	1	0	0	0	0	1	0	0	0	15359	1116	39	1	2004	1	STAT5A	17	40460235	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	32881970	40460235	40734975	73	66181										
SDK2	0	genome.wustl.edu	37	chr17	71426721	71426721	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gtgcccttgatgacactctgAtcctgggggggcttggtgat	15	9	1	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	17	71426721	71426721	A	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1512	p.D504E	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	85	0	0	57	65	53.28	-	-	-	T	71426721	A	T	71426721	3	4	755	1	0	0	0	0	1	0	0	0	14057	330	12	5	5142	5	SDK2	17	71426721	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	30966486	71426721	9768489	74	66182										
CHST9	0	genome.wustl.edu	37	chr18	24496887	24496887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ttcttttccaattggaacagCcagccttaggtacctcacaa	6	12	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	18	24496887	24496887	C	G	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.668	p.G223A	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	241	0	0	88	423	82.62	-	-	-	G	24496887	C	G	24496887	3	3	755	1	0	0	0	0	1	0	0	0	3440	739	26	4	667	4	CHST9	18	24496887	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		24496887	53580361	75	66183										
SYMPK	0	genome.wustl.edu	37	chr19	46321248	46321248	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgaggcgggacaggatgttcAtgacgaagccccccaggcgg	16	11	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	19	46321248	46321248	A	T	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.3050	p.M1017K	1.000	pfam_Symplekin_C	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	52	0	0	37	14	27.45	-	-	-	T	46321248	A	T	46321248	3	4	755	1	0	0	0	0	1	0	0	0	15531	217	8	5	794	5	SYMPK	19	46321248	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09		46321248	12807735	76	66184										
SIGLEC9	0	genome.wustl.edu	37	chr19	51631731	51631731	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggcgtgggagatacgggcatAgaggatgcaaacgctgtcag	17	7	1	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	19	51631731	51631731	A	T	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	silent	c.1167	p.I389	0.001	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	187	1	0.53	112	138	55.2	-	-	-	T	51631731	A	T	51631731	2	4	755	1	0	0	0	0	0	0	0	1	14404	410	15	5		5	SIGLEC9	19	51631731	Silent	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	5310483	51631731	7497252	77	66185										
CD33	0	genome.wustl.edu	37	chr19	51728821	51728821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	gaggaagtaccaaatacagtTacaaatctccccagctctct	6	12	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	19	51728821	51728821	T	C	SNP	CD33	ENST00000262262	human	ensembl	69_37n	1	known	missense	c.385	p.Y129H	0.004	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	38	0	0	52	19	26.76	-	-	-	C	51728821	T	C	51728821	3	2	755	1	0	0	0	0	1	0	0	0	3034	1754	61	5	391	5	CD33	19	51728821	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	97090	51728821	7400162	78	66186										
ZNF665	0	genome.wustl.edu	37	chr19	53668116	53668116	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cttgccgcaatcattacattTgtatggtttttgtccagtat	7	8	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	19	53668116	53668116	T	G	SNP	ZNF665	ENST00000396424	human	ensembl	69_37n	-1	known	missense	c.1627	p.K543Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497	217	2	0.91	298	91	23.33	-	-	-	G	53668116	T	G	53668116	3	3	755	1	0	0	0	0	1	0	0	0	18169	1821	63	5	413	5	ZNF665	19	53668116	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	1939295	53668116	5460867	79	66187										
GGTLC1	0	genome.wustl.edu	37	chr20	23966412	23966412	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccgaaccagaggttgtagatGatggcctggggcatgggagt	17	7	0	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	20	23966412	23966412	G	T	SNP	GGTLC1	ENST00000278765	human	ensembl	69_37n	-1	known	silent	c.423	p.I141	1.000	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435	166	1	0.6	260	68	20.54	-	-	-	T	23966412	G	T	23966412	2	4	755	1	0	0	0	0	0	0	0	1	6417	1280	45	2		2	GGTLC1	20	23966412	Silent	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09		23966412	39059108	80	66188										
VSX1	0	genome.wustl.edu	37	chr20	25060118	25060118	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	caaggtgggggatgcctttaGgtcattcctgtcttcagact	12	9	3	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	20	25060118	25060118	G	C	SNP	VSX1	ENST00000376709	human	ensembl	69_37n	-1	known	missense	c.457	p.L153V	0.761	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	VSX1	HGNC	ENSG00000100987	89	0	0	160	33	17.1	-	-	-	C	25060118	G	C	25060118	3	2	755	1	0	0	0	0	1	0	0	0	17328	991	35	4	749	4	VSX1	20	25060118	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	1093706	25060118	37965402	81	66189										
FAM65C	0	genome.wustl.edu	37	chr20	49208955	49208955	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cctgcacaccctcggagtgcCgtccagctggagcagcgccc	12	18	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	20	49208955	49208955	C	G	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.2503	p.G835R	0.984	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	24	0	0	11	18	62.07	-	-	-	G	49208955	C	G	49208955	3	3	755	1	0	0	0	0	1	0	0	0	5646	652	23	3	365	3	FAM65C	20	49208955	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	24148837	49208955	13816565	82	66190										
ITGB2	0	genome.wustl.edu	37	chr21	46309979	46309979	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cgtatatcagcttgccggggAcgtcgctggtgtggcacagg	16	10	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	21	46309979	46309979	A	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1571	p.V524D	0.004	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	47	0	0	75	20	21.05	-	-	-	T	46309979	A	T	46309979	3	4	755	1	0	0	0	0	1	0	0	0	7948	275	10	5	758	5	ITGB2	21	46309979	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09		46309979	1819916	83	66191										
COL18A1	0	genome.wustl.edu	37	chr21	46897375	46897375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ccacgtgggacgggagtgtcCggacccctgggggccgcgtg	19	13	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	21	46897375	46897375	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	missense	c.2224	p.R742W	0.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	39	0	0	97	21	17.65	-	-	-	T	46897375	C	T	46897375	3	4	755	1	0	0	0	0	1	0	0	0	3705	643	23	1	2360	1	COL18A1	21	46897375	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	587396	46897375	1232520	84	66192										
UPB1	0	genome.wustl.edu	37	chr22	24909455	24909455	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	agtgggtgatttcaacgaggTgagccacccataagatagat	12	7	1	4			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	22	24909455	24909455	T	A	SNP	UPB1	ENST00000326010	human	ensembl	69_37n	1	known	splice_site	c.621+2	e5+2	1.000	-	-	-	no_errors	UPB1	HGNC	ENSG00000100024	61	0	0	32	28	46.67	-	-	-	A	24909455	T	A	24909455	5	1	755	1	0	0	0	0	0	0	1	0	17099	1710	59	5	641	5	UPB1	22	24909455	Splice_Site	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09		24909455	26395111	85	66193										
MAGEB4	0	genome.wustl.edu	37	chrX	30260876	30260876	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	atgcctctactgagtgtgatCttcttaaatggcaactgtgc	9	9	3	2			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	30260876	30260876	C	G	SNP	MAGEB4	ENST00000378982	human	ensembl	69_37n	1	known	missense	c.624	p.I208M	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	128	0	0	140	43	23.5	-	-	-	G	30260876	C	G	30260876	3	3	755	1	0	0	0	0	1	0	0	0	9249	903	32	2	626	2	MAGEB4	23	30260876	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09		30260876	125009684	86	66194										
CACNA1F	0	genome.wustl.edu	37	chrX	49076144	49076144	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgccctcagggatgggtaccAccttctccttgggtacaact	10	13	2	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	49076144	49076144	A	G	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.2525	p.V842A	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	216	2	0.9	318	92	22.38	-	-	-	G	49076144	A	G	49076144	3	3	755	1	0	0	0	0	1	0	0	0	2568	159	6	5	3524	5	CACNA1F	23	49076144	Missense_Mutation	SNP	A	TCGA-E2-A14R-01A-11D-A10Y-09	18815268	49076144	106194416	87	66195										
TEX11	0	genome.wustl.edu	37	chrX	70073144	70073144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cagcgattagaaaatttccaGcatccaaccattcttttcct	4	12	1	1			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	70073144	70073144	G	A	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	missense	c.404	p.A135V	0.311	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	207	0	0	214	65	23.3	-	-	-	A	70073144	G	A	70073144	3	1	755	1	0	0	0	0	1	0	0	0	15869	971	34	4	2518	4	TEX11	23	70073144	Missense_Mutation	SNP	G	TCGA-E2-A14R-01A-11D-A10Y-09	20997000	70073144	85197416	88	66196										
CYSLTR1	0	genome.wustl.edu	37	chrX	77528833	77528833	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	cacacaaacctggcttttttCtgtgtaaccaaattaatgtt	5	9	1	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	77528833	77528833	C	A	SNP	CYSLTR1	ENST00000373304	human	ensembl	69_37n	-1	known	missense	c.411	p.Q137H	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR1	HGNC	ENSG00000173198	172	0	0	248	222	47.23	-	-	-	A	77528833	C	A	77528833	3	1	755	1	0	0	0	0	1	0	0	0	4232	912	32	2	606	2	CYSLTR1	23	77528833	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	7455689	77528833	77741727	89	66197										
GRIA3	0	genome.wustl.edu	37	chrX	122538638	122538638	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	tgaaggctattgtgtagaccTagcctatgaaatagccaaac	9	8	0	3			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	122538638	122538638	T	C	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.1373	p.L458P	1.000	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	242	0	0	321	103	24.29	-	-	-	C	122538638	T	C	122538638	3	2	755	1	0	0	0	0	1	0	0	0	6820	1522	53	5	1411	5	GRIA3	23	122538638	Missense_Mutation	SNP	T	TCGA-E2-A14R-01A-11D-A10Y-09	45009805	122538638	32731922	90	66198										
BCORL1	0	genome.wustl.edu	37	chrX	129147782	129147782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0989010989010989	9	0.192475433524318	1.80866980938717	2.4031862745098	0.969352446861097	0.103188405797102	0.522892543365626	0	ggctcccatgccagcatccaCgcctccagcggcccctgccc	9	22	0	0			TCGA-E2-A14R-01A-11D-A10Y-09	TCGA-E2-A14R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7212115-1007-40cf-b9b5-7b25e2f5f2a4	7b38de28-3b9d-4a67-bf94-5fd17317d1a9	X	129147782	129147782	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.1034	p.T345M	0.983	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	113	0	0	120	50	29.41	-	-	-	T	129147782	C	T	129147782	3	4	755	1	0	0	0	0	1	0	0	0	1391	536	19	1	1044	1	BCORL1	23	129147782	Missense_Mutation	SNP	C	TCGA-E2-A14R-01A-11D-A10Y-09	6609144	129147782	26122778	91	66199										
LPHN2	0	genome.wustl.edu	37	chr1	82409015	82409015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgccaactaccatgataccTcaccatacagatggggagga	9	11	1	2			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	1	82409015	82409015	T	C	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.760	p.S254P	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	210	0	0	122	63	34.05	-	-	-	C	82409015	T	C	82409015	3	2	756	1	0	0	0	0	1	0	0	0	8982	1551	54	5	774	5	LPHN2	1	82409015	Missense_Mutation	SNP	T	TCGA-E2-A14S-01A-11D-A12B-09		82409015	166841606	1	66200										
ST3GAL5	0	genome.wustl.edu	37	chr2	86073664	86073664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccaacatgttctgaatatcCctcaactggtgcactgttta	6	11	2	1			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	2	86073664	86073664	C	T	SNP	ST3GAL5	ENST00000377332	human	ensembl	69_37n	-1	known	missense	c.685	p.G229R	0.998	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525	227	0	0	166	58	25.89	-	-	-	T	86073664	C	T	86073664	3	4	756	1	0	0	0	0	1	0	0	0	15309	632	22	4	583	4	ST3GAL5	2	86073664	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09		86073664	157125709	2	66201										
RAD18	0	genome.wustl.edu	37	chr3	8983486	8983486	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagcaaactgcagcagatgaTtccttgaagcacaaagaaca	8	9	0	4			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	8983486	8983486	T	A	SNP	RAD18	ENST00000264926	human	ensembl	69_37n	-1	known	missense	c.269	p.N90I	1.000	NULL	pfam_SAP_DNA-bd,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_DNA-bd,pfscan_Znf_RING,pfscan_SAP_DNA-bd	-	no_errors	RAD18	HGNC	ENSG00000070950	199	0	0	140	78	35.78	-	-	-	A	8983486	T	A	8983486	3	1	756	1	0	0	0	0	1	0	0	0	13063	1493	52	5	1254	5	RAD18	3	8983486	Missense_Mutation	SNP	T	TCGA-E2-A14S-01A-11D-A12B-09		8983486	189038944	3	66202										
BTD	0	genome.wustl.edu	37	chr3	15643051	15643051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcaaacgcgaaatcggcagCacgccacctctggtactgca	11	14	1	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	15643051	15643051	C	A	SNP	BTD	ENST00000417015	human	ensembl	69_37n	1	known	missense	c.140	p.A47E	0.000	NULL	NULL	-	no_errors	BTD	HGNC	ENSG00000169814	56	0	0	36	11	23.4	-	-	-	A	15643051	C	A	15643051	3	1	756	1	0	0	0	0	1	0	0	0	1559	725	25	4		4	BTD	3	15643051	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09	6659565	15643051	182379379	4	66203										
SNRK	0	genome.wustl.edu	37	chr3	43389153	43389153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctcaacacaagtggttttgCgccggaagccatctgtaacc	9	12	2	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	43389153	43389153	C	T	SNP	SNRK	ENST00000296088	human	ensembl	69_37n	1	known	missense	c.1402	p.R468C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SNRK	HGNC	ENSG00000163788	248	0	0	168	99	37.08	-	-	-	T	43389153	C	T	43389153	3	4	756	1	0	0	0	0	1	0	0	0	14940	768	27	1	1420	1	SNRK	3	43389153	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09	27746102	43389153	154633277	5	66204										
NAALADL2	0	genome.wustl.edu	37	chr3	174974237	174974237	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagttatggaatggcagatgAtttaaaaaggattaggaaaa	12	1	0	2			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	174974237	174974237	A	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.857	p.D286V	0.997	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	175	0	0	134	38	21.97	-	-	-	T	174974237	A	T	174974237	3	4	756	1	0	0	0	0	1	0	0	0	10202	333	12	5	871	5	NAALADL2	3	174974237	Missense_Mutation	SNP	A	TCGA-E2-A14S-01A-11D-A12B-09	131585084	174974237	23048193	6	66205										
LRRC15	0	genome.wustl.edu	37	chr3	194080956	194080956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attcccaaagagagtaagacGgttgagctggggcagctgca	14	8	0	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	194080956	194080956	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.835	p.R279C	0.955	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	524	0	0	357	219	37.95	-	-	-	A	194080956	G	A	194080956	3	1	756	1	0	0	0	0	1	0	0	0	9036	1116	39	1	932	1	LRRC15	3	194080956	Missense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	19106719	194080956	3941474	7	66206										
PIK3R1	0	genome.wustl.edu	37	chr5	67589601	67589602	+	In_Frame_Ins	INS	-	-	GTT													0	0	1	0	0	0	1	1	0	ttacatgaatataacactcaINSgtttcaagaaaaaagtcgag							TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	5	67589601	67589602	-	GTT	INS	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	in_frame_ins	c.1364_1365	p.456in_frame_insL	1.000:1.000	superfamily_Guanylate-bd_C	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	136	0	0	107	67	38.51	-	-	-	GTT	67589602	-	GTT	67589601	7	5	756	1	0	1	1	0	0	0	0	0	11992	188	7	0	1532	0	PIK3R1	5	67589601	In_Frame_Ins	INS	-	TCGA-E2-A14S-01A-11D-A12B-09		67589601	113325659	8	66207										
KIAA0240	0	genome.wustl.edu	37	chr6	42832565	42832565	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggtgtgacggaacccatgaAtcatgaccagtttcatctag	10	10	3	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	42832565	42832565	A	C	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	missense	c.2621	p.N874T	0.975	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	147	0	0	116	53	31.36	-	-	-	C	42832565	A	C	42832565	3	2	756	1	0	0	0	0	1	0	0	0	8216	101	4	5	2663	5	KIAA0240	6	42832565	Missense_Mutation	SNP	A	TCGA-E2-A14S-01A-11D-A12B-09		42832565	128282502	9	66208										
MTRF1L	0	genome.wustl.edu	37	chr6	153315705	153315705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctagtatggacgcggccttgCttttctgtctttggcactct	10	11	3	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	153315705	153315705	C	G	SNP	MTRF1L	ENST00000367233	human	ensembl	69_37n	-1	known	missense	c.630	p.K210N	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1L	HGNC	ENSG00000112031	393	2	0.5	278	131	32.03	-	-	-	G	153315705	C	G	153315705	3	3	756	1	0	0	0	0	1	0	0	0	10032	796	28	4	528	4	MTRF1L	6	153315705	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09	110483140	153315705	17799362	10	66209										
PLOD3	0	genome.wustl.edu	37	chr7	100854922	100854922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctcggagcgggcgtagtaCtcatcggggctcagggcgcc	16	13	2	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	7	100854922	100854922	C	T	SNP	PLOD3	ENST00000440925	human	ensembl	69_37n	-1	known	missense	c.146	p.S49N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	19	0	0	15	9	37.5	-	-	-	T	100854922	C	T	100854922	3	4	756	1	0	0	0	0	1	0	0	0	12177	564	20	4	940	4	PLOD3	7	100854922	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09		100854922	58283741	11	66210										
PLEKHA1	0	genome.wustl.edu	37	chr10	124177438	124177438	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaaaaactggaagagaagatAttttcaattggatgaaaaca	9	3	1	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	10	124177438	124177438	A	G	SNP	PLEKHA1	ENST00000368990	human	ensembl	69_37n	1	known	missense	c.635	p.Y212C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679	166	0	0	44	40	47.62	-	-	-	G	124177438	A	G	124177438	3	3	756	1	0	0	0	0	1	0	0	0	12129	449	16	5	661	5	PLEKHA1	10	124177438	Missense_Mutation	SNP	A	TCGA-E2-A14S-01A-11D-A12B-09		124177438	11357309	12	66211										
ASCL3	0	genome.wustl.edu	37	chr11	8959451	8959451	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctggcccgtaggagtactcGcaccctctgtaatttggata	11	11	1	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	8959451	8959451	G	A	SNP	ASCL3	ENST00000325884	human	ensembl	69_37n	-1	known	silent	c.258	p.C86	0.917	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	ASCL3	HGNC	ENSG00000176009	144	0	0	88	53	37.59	-	-	-	A	8959451	G	A	8959451	2	1	756	1	0	0	0	0	0	0	0	1	1039	1079	38	1		1	ASCL3	11	8959451	Silent	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09		8959451	126047065	13	66212										
AHNAK	0	genome.wustl.edu	37	chr11	62284554	62284554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcactgaatgaatttgagcGgtgccgtggcttcttacttt	10	8	2	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	62284554	62284554	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.17335	p.R5779C	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	171	0	0	111	47	29.75	-	-	-	A	62284554	G	A	62284554	3	1	756	1	0	0	0	0	1	0	0	0	414	1116	39	1	457	1	AHNAK	11	62284554	Missense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	53325103	62284554	72721962	14	66213										
NPAS4	0	genome.wustl.edu	37	chr11	66188712	66188712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagatcaacgccgagatccGgaacctcaaggagctgctgc	11	14	2	2			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	66188712	66188712	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.62	p.R21Q	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	27	0	0	18	5	21.74	-	-	-	A	66188712	G	A	66188712	3	1	756	1	0	0	0	0	1	0	0	0	10637	1116	39	1	64	1	NPAS4	11	66188712	Missense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	3904158	66188712	68817804	15	66214										
MYO7A	0	genome.wustl.edu	37	chr11	76893500	76893500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtctggatcaccatcctccGcttcatgggggacctccctg	11	15	3	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	76893500	76893500	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	1	known	missense	c.3140	p.R1047H	0.976	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	59	0	0	105	21	16.54	-	-	-	A	76893500	G	A	76893500	3	1	756	1	0	0	0	0	1	0	0	0	10154	1087	38	1	3234	1	MYO7A	11	76893500	Missense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	10704788	76893500	58113016	16	66215										
PDE3A	0	genome.wustl.edu	37	chr12	20522503	20522503	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctggagcagtgtaaggaggcGgcggcggcggaggaggagga	23	6	0	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	20522503	20522503	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.285	p.A95	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	12	0	0	9	4	30.77	-	-	-	A	20522503	G	A	20522503	2	1	756	1	0	0	0	0	0	0	0	1	11710	1103	39	1		1	PDE3A	12	20522503	Silent	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09		20522503	113329392	17	66216										
VPS18	0	genome.wustl.edu	37	chr15	41194898	41194898	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctgtggctgaagatcgcaCggcacgtggtgcaggaagag	17	8	0	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	15	41194898	41194898	C	G	SNP	VPS18	ENST00000220509	human	ensembl	69_37n	1	known	missense	c.2281	p.R761G	1.000	pfam_Clathrin_H-chain/VPS_repeat	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	167	0	0	109	46	29.49	-	-	-	G	41194898	C	G	41194898	3	3	756	1	0	0	0	0	1	0	0	0	17291	527	19	3	2299	3	VPS18	15	41194898	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09		41194898	61336494	18	66217										
ZNF668	0	genome.wustl.edu	37	chr16	31075619	31075619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctggctttggcttcacctcGgccacctcttcagagcagtc	9	15	4	1			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	31075619	31075619	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	silent	c.231	p.A77	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	97	0	0	63	25	28.41	-	-	-	A	31075619	G	A	31075619	2	1	756	1	0	0	0	0	0	0	0	1	18171	1103	39	1		1	ZNF668	16	31075619	Silent	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09		31075619	59279134	19	66218										
CLEC18A	0	genome.wustl.edu	37	chr16	69985383	69985383	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cagctgcaggagcaggctccGatggccggaggtaagggaca	17	10	0	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	69985383	69985383	G	A	SNP	CLEC18A	ENST00000449317	human	ensembl	69_37n	1	known	silent	c.114	p.P38	0.000	superfamily_CAP_domain	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322	62	0	0	29	4	12.12	-	-	-	A	69985383	G	A	69985383	2	1	756	1	0	0	0	0	0	0	0	1	3532	1045	37	1		1	CLEC18A	16	69985383	Silent	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	38909764	69985383	20369370	20	66219										
MUC16	0	genome.wustl.edu	37	chr19	9069332	9069332	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagtaacctttggaggtgtGtgtccggatggctgggagtg	17	7	0	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	9069332	9069332	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.18114	p.H6038	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	324	1	0.31	203	85	29.41	-	-	-	A	9069332	G	A	9069332	2	1	756	1	0	0	0	0	0	0	0	1	10045	1368	48	4		4	MUC16	19	9069332	Silent	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09		9069332	50059651	21	66220										
CACNA1A	0	genome.wustl.edu	37	chr19	13356070	13356070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagatgttccaggcatcgcGgaaataattctagaatgggg	13	6	1	2			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	13356070	13356070	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.4876	p.R1626C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	108	0	0	77	37	32.46	-	-	-	A	13356070	G	A	13356070	3	1	756	1	0	0	0	0	1	0	0	0	2563	1116	39	1	2814	1	CACNA1A	19	13356070	Missense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	4286738	13356070	45772913	22	66221										
ZNF333	0	genome.wustl.edu	37	chr19	14830057	14830057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcactgtacacaaaagaaccCatgtgggaagagagaccatt	9	9	1	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	14830057	14830057	C	T	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	missense	c.1918	p.H640Y	0.660	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	150	0	0	86	51	37.23	-	-	-	T	14830057	C	T	14830057	3	4	756	1	0	0	0	0	1	0	0	0	17946	594	21	4	1960	4	ZNF333	19	14830057	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09	1473987	14830057	44298926	23	66222										
U2AF1L4	0	genome.wustl.edu	37	chr19	36235431	36235431	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctcctgcacctccacgtcActcacatgacctggggtggg	11	15	2	1			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	36235431	36235431	A	G	SNP	U2AF1L4	ENST00000412391	human	ensembl	69_37n	-1	known	silent	c.210	p.S70	0.999	smart_RRM_dom_euk,pfscan_RRM_dom	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1L4	HGNC	ENSG00000161265	28	0	0	17	4	19.05	-	-	-	G	36235431	A	G	36235431	2	3	756	1	0	0	0	0	0	0	0	1	16919	174	6	5		5	U2AF1L4	19	36235431	Silent	SNP	A	TCGA-E2-A14S-01A-11D-A12B-09	21405374	36235431	22893552	24	66223										
USP29	0	genome.wustl.edu	37	chr19	57640371	57640371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accaaaacaaatctcagcaaCccatgaaatctgatgatgat	5	10	2	4			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	57640371	57640371	C	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	missense	c.328	p.P110S	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	69	0	0	41	22	34.92	-	-	-	T	57640371	C	T	57640371	3	4	756	1	0	0	0	0	1	0	0	0	17156	507	18	4	330	4	USP29	19	57640371	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09	21404940	57640371	1488612	25	66224										
RASSF2	0	genome.wustl.edu	37	chr20	4771137	4771137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgttgatggagaagcggtggCgtctgattcgccgctggtca	16	9	2	3			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	20	4771137	4771137	C	T	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	missense	c.497	p.R166H	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF2	HGNC	ENSG00000101265	115	0	0	74	45	37.5	-	-	-	T	4771137	C	T	4771137	3	4	756	1	0	0	0	0	1	0	0	0	13169	768	27	1	507	1	RASSF2	20	4771137	Missense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09		4771137	58254383	26	66225										
OR11H1	0	genome.wustl.edu	37	chr22	16449768	16449769	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	gaatttggctcagagacattINScattaggccagtgacctgca							TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	16449768	16449769	-	A	INS	OR11H1	ENST00000252835	human	ensembl	69_37n	-1	known	frame_shift_ins	c.37_36	p.N12fs	0.999:1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538	107	0	0	112	26	18.84	-	-	-	A	16449769	-	A	16449768	7	5	756	1	0	1	1	0	0	0	0	0	10999	1783	62	0	945	0	OR11H1	22	16449768	Frame_Shift_Ins	INS	-	TCGA-E2-A14S-01A-11D-A12B-09		16449768	34854798	27	66226										
CPT1B	0	genome.wustl.edu	37	chr22	51009679	51009679	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgtccctcccggaacattcTggtcattgaggcctcatagg	10	14	3	1			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	51009679	51009679	T	C	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	missense	c.1783	p.R595G	0.984	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	131	0	0	67	54	44.63	-	-	-	C	51009679	T	C	51009679	3	2	756	1	0	0	0	0	1	0	0	0	3862	1588	55	5	555	5	CPT1B	22	51009679	Missense_Mutation	SNP	T	TCGA-E2-A14S-01A-11D-A12B-09	34559911	51009679	294887	28	66227										
PCDH11X	0	genome.wustl.edu	37	chrX	91133194	91133194	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgaggatggtggtagagtatCacgttcttcaagtgccaaag	13	6	3	2			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	91133194	91133194	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	nonsense	c.1955	p.S652*	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	117	0	0	71	46	39.32	-	-	-	A	91133194	C	A	91133194	4	1	756	1	0	0	0	0	0	1	0	0	11581	838	29	2	1961	2	PCDH11X	23	91133194	Nonsense_Mutation	SNP	C	TCGA-E2-A14S-01A-11D-A12B-09		91133194	64137366	29	66228										
MAGEA3	0	genome.wustl.edu	37	chrX	151936112	151936112	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggcccagggcctctcctcGggcctcaaggccttcttcag	11	17	4	0			TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	151936112	151936112	G	A	SNP	MAGEA3	ENST00000370278	human	ensembl	69_37n	-1	known	nonsense	c.55	p.R19*	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867	19	0	0	10	4	28.57	-	-	-	A	151936112	G	A	151936112	4	1	756	1	0	0	0	0	0	1	0	0	9236	1124	39	1	893	1	MAGEA3	23	151936112	Nonsense_Mutation	SNP	G	TCGA-E2-A14S-01A-11D-A12B-09	60802918	151936112	3334448	30	66229										
EIF4G3	0	genome.wustl.edu	37	chr1	21167444	21167444	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gtgatctggctcctttccagGgtggactccactcccactct	9	15	2	1			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	1	21167444	21167444	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	silent	c.3816	p.T1272	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	223	0	0	137	21	13.29	-	-	-	A	21167444	G	A	21167444	2	1	757	1	0	0	0	0	0	0	0	1	5075	1219	43	4		4	EIF4G3	1	21167444	Silent	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09		21167444	228083177	1	66230										
CYP4A22	0	genome.wustl.edu	37	chr1	47610236	47610236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	tcccagatggagaatgggagCatcttgtcagacaaggacct	12	9	2	3			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	1	47610236	47610236	C	T	SNP	CYP4A22	ENST00000371891	human	ensembl	69_37n	1	known	silent	c.912	p.S304	0.996	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365	549	0	0	239	28	10.49	-	-	-	T	47610236	C	T	47610236	2	4	757	1	0	0	0	0	0	0	0	1	4215	709	25	4		4	CYP4A22	1	47610236	Silent	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	26442792	47610236	201640385	2	66231										
HAPLN2	0	genome.wustl.edu	37	chr1	156593871	156593872	+	Frame_Shift_Ins	INS	-	-	T													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggtcatcgcgggcgtgcgccINStggaggacgagggccggtac							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	1	156593871	156593872	-	T	INS	HAPLN2	ENST00000255039	human	ensembl	69_37n	1	known	frame_shift_ins	c.358_359	p.E121fs	1.000:1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like,prints_Link	-	no_errors	HAPLN2	HGNC	ENSG00000132702	26	0	0	5	2	28.57	-	-	-	T	156593872	-	T	156593871	7	5	757	1	0	1	1	0	0	0	0	0	7006	680	24	0	364	0	HAPLN2	1	156593871	Frame_Shift_Ins	INS	-	TCGA-E2-A14T-01A-11D-A10Y-09	108983635	156593871	92656750	3	66232										
KIAA1614	0	genome.wustl.edu	37	chr1	180904418	180904418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ctttgaggatgagtccgcccGcgaagccgagttccgtcacc	12	14	1	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	1	180904418	180904418	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.1373	p.R458H	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	10	0	0	4	4	50	-	-	-	A	180904418	G	A	180904418	3	1	757	1	0	0	0	0	1	0	0	0	8300	1087	38	1	1391	1	KIAA1614	1	180904418	Missense_Mutation	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09	24310547	180904418	68346203	4	66233										
LGALS8	0	genome.wustl.edu	37	chr1	236706922	236706924	+	In_Frame_Del	DEL	AGG	AGG	-													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggacgaactgtcgtcgttaaAggagaagtgaatgcaaatgc							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	1	236706922	236706924	AGG	-	DEL	LGALS8	ENST00000352231	human	ensembl	69_37n	1	known	in_frame_del	c.738_740	p.G247in_frame_del	1.000:1.000:1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS8	HGNC	ENSG00000116977	210	0	0	105	42	28.38	-	-	-	-	236706924	AGG	-	236706922	7	5	757	1	0	1	0	1	0	0	0	0	8802	69	3	0	768	0	LGALS8	1	236706922	In_Frame_Del	DEL	AGG	TCGA-E2-A14T-01A-11D-A10Y-09	55802504	236706922	12543699	5	66234										
EXOC6B	0	genome.wustl.edu	37	chr2	72406489	72406489	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	agtggtggctgctgatgagtCctcggagctgcttggccacg	16	10	0	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	2	72406489	72406489	C	G	SNP	EXOC6B	ENST00000272427	human	ensembl	69_37n	-1	known	missense	c.2411	p.G804A	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036	425	0	0	174	35	16.75	-	-	-	G	72406489	C	G	72406489	3	3	757	1	0	0	0	0	1	0	0	0	5345	855	30	2	28	2	EXOC6B	2	72406489	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09		72406489	170792884	6	66235										
TTN	0	genome.wustl.edu	37	chr2	179429426	179429426	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	attttcagcagaaactttgaActcatactcaaggccctcat	5	11	4	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	2	179429426	179429426	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.73729	p.F24577V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	105	0	0	52	20	27.78	-	-	-	C	179429426	A	C	179429426	3	2	757	1	0	0	0	0	1	0	0	0	16832	43	2	5	26694	5	TTN	2	179429426	Missense_Mutation	SNP	A	TCGA-E2-A14T-01A-11D-A10Y-09	107022937	179429426	63769947	7	66236										
KIF1A	0	genome.wustl.edu	37	chr2	241662889	241662889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gtccagaatgagactgtcacTccggggcctccagcctgcca	11	15	1	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	2	241662889	241662889	T	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.4405	p.S1469C	0.998	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	64	0	0	21	4	16	-	-	-	A	241662889	T	A	241662889	3	1	757	1	0	0	0	0	1	0	0	0	8335	1551	54	5	1002	5	KIF1A	2	241662889	Missense_Mutation	SNP	T	TCGA-E2-A14T-01A-11D-A10Y-09	62233463	241662889	1536484	8	66237										
CELSR3	0	genome.wustl.edu	37	chr3	48699138	48699138	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	cgacgaaagcgtgcccggttCgccgaggttactttcctggc	13	13	0	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	3	48699138	48699138	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	silent	c.930	p.A310	0.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	24	0	0	13	5	27.78	-	-	-	T	48699138	C	T	48699138	2	4	757	1	0	0	0	0	0	0	0	1	3252	871	31	1		1	CELSR3	3	48699138	Silent	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09		48699138	149323292	9	66238										
ALDH1L1	0	genome.wustl.edu	37	chr3	125828868	125828868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gcagtactccatcagcttcaCaaggtgggcatggtgattct	11	10	3	1			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	3	125828868	125828868	C	A	SNP	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	missense	c.2266	p.V756L	0.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	316	0	0	62	29	31.87	-	-	-	A	125828868	C	A	125828868	3	1	757	1	0	0	0	0	1	0	0	0	494	478	17	4	458	4	ALDH1L1	3	125828868	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	77129730	125828868	72193562	10	66239										
MOGAT3	0	genome.wustl.edu	37	chr7	100839243	100839243	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	aggcctagatgaaggtgaggCaggtggaagcggggacccca	18	8	0	3			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	7	100839243	100839243	C	A	SNP	MOGAT3	ENST00000223114	human	ensembl	69_37n	-1	known	missense	c.1010	p.C337F	0.011	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	143	1	0.69	47	35	42.68	-	-	-	A	100839243	C	A	100839243	3	1	757	1	0	0	0	0	1	0	0	0	9768	710	25	4	19	4	MOGAT3	7	100839243	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09		100839243	58299420	11	66240										
ATXN7L1	0	genome.wustl.edu	37	chr7	105255024	105255024	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	tgctgagggttgcggccacaTgagggaaagctgtggtgtgg	19	6	0	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	7	105255024	105255024	T	A	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	missense	c.1757	p.H586L	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	608	0	0	233	56	19.31	-	-	-	A	105255024	T	A	105255024	3	1	757	1	0	0	0	0	1	0	0	0	1220	1464	51	5	843	5	ATXN7L1	7	105255024	Missense_Mutation	SNP	T	TCGA-E2-A14T-01A-11D-A10Y-09	4415781	105255024	53883639	12	66241										
B4GALT1	0	genome.wustl.edu	37	chr9	33135287	33135287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gctcctgccggttgcggaatGgaatgatgatggccaccttg	14	10	0	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	9	33135287	33135287	G	A	SNP	B4GALT1	ENST00000379731	human	ensembl	69_37n	-1	known	missense	c.548	p.P183L	1.000	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT1	HGNC	ENSG00000086062	220	0	0	37	20	35.09	-	-	-	A	33135287	G	A	33135287	3	1	757	1	0	0	0	0	1	0	0	0	1274	1348	47	4	668	4	B4GALT1	9	33135287	Missense_Mutation	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09		33135287	108078144	13	66242										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	10	8115874	8115875	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	193	0	0	73	25	25.51	-	-	-	G	8115875	-	G	8115874	7	5	757	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-E2-A14T-01A-11D-A10Y-09		8115874	127418873	14	66243										
ZNF239	0	genome.wustl.edu	37	chr10	44052732	44052732	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gaagcccttcccacacttgtCacacttataaggcttctcat	5	14	2	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	10	44052732	44052732	C	G	SNP	ZNF239	ENST00000306006	human	ensembl	69_37n	-1	known	missense	c.796	p.D266H	0.426	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793	370	0	0	115	35	23.33	-	-	-	G	44052732	C	G	44052732	3	3	757	1	0	0	0	0	1	0	0	0	17887	826	29	2	584	2	ZNF239	10	44052732	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	35936858	44052732	91482015	15	66244										
NEUROG3	0	genome.wustl.edu	37	chr10	71332756	71332756	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggaaggaccgctccgtctcaCgggtcacttggacagtgggc	15	12	2	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	10	71332756	71332756	C	G	SNP	NEUROG3	ENST00000242462	human	ensembl	69_37n	-1	known	missense	c.44	p.R15P	0.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	NEUROG3	HGNC	ENSG00000122859	25	0	0	5	6	54.55	-	-	-	G	71332756	C	G	71332756	3	3	757	1	0	0	0	0	1	0	0	0	10426	536	19	3	604	3	NEUROG3	10	71332756	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	27280024	71332756	64201991	16	66245										
PSAP	0	genome.wustl.edu	37	chr10	73594255	73594255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ttcagtccaaggaccgggccGgctagagctaaaatgaaaac	11	10	1	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	10	73594255	73594255	G	A	SNP	PSAP	ENST00000373120	human	ensembl	69_37n	-1	known	silent	c.48	p.A16	0.010	pirsf_Saposin_chordata	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746	98	0	0	34	4	10.53	-	-	-	A	73594255	G	A	73594255	2	1	757	1	0	0	0	0	0	0	0	1	12723	1103	39	1		1	PSAP	10	73594255	Silent	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09	2261499	73594255	61940492	17	66246										
EXOC6	0	genome.wustl.edu	37	chr10	94653133	94653133	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	tatgatgaccaaccaaatgcGcacaagaagtttatggaaaa	8	7	0	3			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	10	94653133	94653133	G	A	SNP	EXOC6	ENST00000371547	human	ensembl	69_37n	1	known	silent	c.177	p.A59	0.994	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	206	1	0.48	76	25	24.75	-	-	-	A	94653133	G	A	94653133	2	1	757	1	0	0	0	0	0	0	0	1	5344	1074	38	1		1	EXOC6	10	94653133	Silent	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09	21058878	94653133	40881614	18	66247										
ABCC8	0	genome.wustl.edu	37	chr11	17418752	17418752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	cctctcacccaggagcccctCgtagctctctgcctcggttt	8	18	2	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	11	17418752	17418752	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.3979	p.E1327K	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	128	0	0	38	10	20.83	-	-	-	T	17418752	C	T	17418752	3	4	757	1	0	0	0	0	1	0	0	0	58	893	31	1	801	1	ABCC8	11	17418752	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09		17418752	117587764	19	66248										
NUP160	0	genome.wustl.edu	37	chr11	47808045	47808045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gacagatgagagctgattggCtgctagccaggcccaggctt	14	10	0	3			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	11	47808045	47808045	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.3808	p.A1270T	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	121	0	0	66	16	19.51	-	-	-	T	47808045	C	T	47808045	3	4	757	1	0	0	0	0	1	0	0	0	10830	797	28	4	522	4	NUP160	11	47808045	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	30389293	47808045	87198471	20	66249										
NUDT8	0	genome.wustl.edu	37	chr11	67396411	67396411	+	Frame_Shift_Del	DEL	C	C	-													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggatcatacacaggccgcagCaggccccacacgtgctcctc							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	11	67396411	67396411	C	-	DEL	NUDT8	ENST00000376693	human	ensembl	69_37n	-1	known	frame_shift_del	c.306	p.L103fs	0.040	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT8	HGNC	ENSG00000167799	50	0	0	14	2	12.5	-	-	-	-	67396411	C	-	67396411	7	5	757	1	0	1	0	1	0	0	0	0	10818	697	25	0	124	0	NUDT8	11	67396411	Frame_Shift_Del	DEL	C	TCGA-E2-A14T-01A-11D-A10Y-09	19588366	67396411	67610105	21	66250										
PTMS	0	genome.wustl.edu	37	chr12	6879111	6879111	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	aggagaacggggctgaggagGaagaagaagaaactgccgag	18	5	0	5			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	12	6879111	6879111	G	T	SNP	PTMS	ENST00000309083	human	ensembl	69_37n	1	known	nonsense	c.142	p.E48*	1.000	pfam_Pro/parathymosin	pfam_Pro/parathymosin	-	no_errors	PTMS	HGNC	ENSG00000159335	185	1	0.54	182	22	10.73	-	-	-	T	6879111	G	T	6879111	4	4	757	1	0	0	0	0	0	1	0	0	12848	1175	41	2	152	2	PTMS	12	6879111	Nonsense_Mutation	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09		6879111	126972784	22	66251										
PTMS	0	genome.wustl.edu	37	chr12	6879322	6879322	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gacccatttctggctcctcaGatgaggaagaagaagaagag	12	8	2	6			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	12	6879322	6879322	G	C	SNP	PTMS	ENST00000389462	human	ensembl	69_37n	1	known	splice_site	c.274-1	e4-1	1.000	-	-	-	no_errors	PTMS	HGNC	ENSG00000159335	110	0	0	122	17	12.14	-	-	-	C	6879322	G	C	6879322	5	2	757	1	0	0	0	0	0	0	1	0	12848	956	33	2	210	2	PTMS	12	6879322	Splice_Site	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09	211	6879322	126972573	23	66252										
ATP2A2	0	genome.wustl.edu	37	chr12	110781179	110781179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	acatcatgaataaacctcccCggaacccaaaggaaccattg	6	13	1	1			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	12	110781179	110781179	C	T	SNP	ATP2A2	ENST00000539276	human	ensembl	69_37n	1	known	missense	c.2461	p.R821W	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A2	HGNC	ENSG00000174437	130	0	0	81	15	15.62	-	-	-	T	110781179	C	T	110781179	3	4	757	1	0	0	0	0	1	0	0	0	1141	643	23	1	2523	1	ATP2A2	12	110781179	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09	103901857	110781179	23070716	24	66253										
TBC1D4	0	genome.wustl.edu	37	chr13	75933979	75933980	+	Frame_Shift_Del	DEL	TC	TC	-													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gtctggactgataaggttaaTctcaaatcgcccaaccttaa							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	13	75933979	75933980	TC	-	DEL	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	frame_shift_del	c.1096_1095	p.E365fs	1.000:1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	97	0	0	79	14	14.89	-	-	-	-	75933980	TC	-	75933979	7	5	757	1	0	1	0	1	0	0	0	0	15717	1435	50	0	2876	0	TBC1D4	13	75933979	Frame_Shift_Del	DEL	TC	TCGA-E2-A14T-01A-11D-A10Y-09		75933979	39235899	25	66254										
UBR7	0	genome.wustl.edu	37	chr14	93686624	93686624	+	Frame_Shift_Del	DEL	C	C	-													0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggagatctagatgtcttattCctgacagatgaatacgacac							TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	14	93686624	93686624	C	-	DEL	UBR7	ENST00000013070	human	ensembl	69_37n	1	known	frame_shift_del	c.990	p.L331fs	1.000	NULL	pfam_Znf_N-recognin,superfamily_Znf_FYVE_PHD,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR7	HGNC	ENSG00000012963	68	0	0	38	11	21.15	-	-	-	-	93686624	C	-	93686624	7	5	757	1	0	1	0	1	0	0	0	0	17003	854	30	0	1024	0	UBR7	14	93686624	Frame_Shift_Del	DEL	C	TCGA-E2-A14T-01A-11D-A10Y-09		93686624	13662916	26	66255										
USP31	0	genome.wustl.edu	37	chr16	23096260	23096260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gatgacgctccctttgcagaCgaacactttctgcatcagga	9	12	2	2			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	16	23096260	23096260	C	T	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	missense	c.1751	p.R584H	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	270	0	0	91	30	24.59	-	-	-	T	23096260	C	T	23096260	3	4	757	1	0	0	0	0	1	0	0	0	17159	536	19	1	2331	1	USP31	16	23096260	Missense_Mutation	SNP	C	TCGA-E2-A14T-01A-11D-A10Y-09		23096260	67258493	27	66256										
SPAG5	0	genome.wustl.edu	37	chr17	26919888	26919888	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	ggacgatggttttaaccataTaattgcccagtgggtctact	10	8	1	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	17	26919888	26919888	T	A	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.374	p.Y125F	0.000	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	487	0	0	233	55	19.1	-	-	-	A	26919888	T	A	26919888	3	1	757	1	0	0	0	0	1	0	0	0	15072	1406	49	5	3295	5	SPAG5	17	26919888	Missense_Mutation	SNP	T	TCGA-E2-A14T-01A-11D-A10Y-09		26919888	54275322	28	66257										
ITPKC	0	genome.wustl.edu	37	chr19	41235234	41235234	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gcctactatggcatggtgctGcaggatggccagaccttcaa	12	11	1	1			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	19	41235234	41235234	G	T	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	silent	c.1383	p.L461	0.998	NULL	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	181	0	0	51	16	23.88	-	-	-	T	41235234	G	T	41235234	2	4	757	1	0	0	0	0	0	0	0	1	7973	1306	46	4		4	ITPKC	19	41235234	Silent	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09		41235234	17893749	29	66258										
KLK7	0	genome.wustl.edu	37	chr19	51483714	51483714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	gagctctcctgtcgcccagcGtatcactgcccaggtgcacg	11	16	2	0			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	19	51483714	51483714	G	A	SNP	KLK7	ENST00000304045	human	ensembl	69_37n	-1	known	missense	c.251	p.T84M	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK7	HGNC	ENSG00000169035	303	0	0	92	19	16.96	-	-	-	A	51483714	G	A	51483714	3	1	757	1	0	0	0	0	1	0	0	0	8462	1145	40	1	522	1	KLK7	19	51483714	Missense_Mutation	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09	10248480	51483714	7645269	30	66259										
ITSN1	0	genome.wustl.edu	37	chr21	35183459	35183459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.923792109678705	0.906200317965024	3.85135135135135	0	0.333333333333333	0.930327025915261	0	tggccttgcgtgagacccccGcccctttggcagtaacctct	10	16	1	1			TCGA-E2-A14T-01A-11D-A10Y-09	TCGA-E2-A14T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14c1c6b6-575e-416b-b219-15552b62ea74	8e0edd30-4ae0-4245-bd91-0ae937ae0599	21	35183459	35183459	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	missense	c.2500	p.A834T	0.599	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	137	0	0	75	13	14.44	-	-	-	A	35183459	G	A	35183459	3	1	757	1	0	0	0	0	1	0	0	0	7980	1087	38	1	2578	1	ITSN1	21	35183459	Missense_Mutation	SNP	G	TCGA-E2-A14T-01A-11D-A10Y-09		35183459	12946436	31	66260										
DLGAP3	0	genome.wustl.edu	37	chr1	35370591	35370591	+	Frame_Shift_Del	DEL	G	G	-													0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	tgtgtggaagccatcttgttGaactggcaactgcttttcaa							TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	1	35370591	35370591	G	-	DEL	DLGAP3	ENST00000235180	human	ensembl	69_37n	-1	known	frame_shift_del	c.394	p.Q132fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	10	0	0	4	2	33.33	-	-	-	-	35370591	G	-	35370591	7	5	758	1	0	1	0	1	0	0	0	0	4597	1299	45	0	2585	0	DLGAP3	1	35370591	Frame_Shift_Del	DEL	G	TCGA-E2-A14U-01A-11D-A228-09		35370591	213880030	1	66261										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	58	0	0	51	6	10.53	-	-	-	A	178936082	G	A	178936082	3	1	758	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		178936082	19086348	2	66262										
EIF4G1	0	genome.wustl.edu	37	chr3	184040637	184040638	+	Frame_Shift_Ins	INS	-	-	A													0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	agcctctaaacctagaggagINSaaaaaacgttacgaccgtga							TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	184040637	184040638	-	A	INS	EIF4G1	ENST00000352767	human	ensembl	69_37n	1	known	frame_shift_ins	c.1845_1846	p.R617fs	1.000:1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867	64	0	0	44	9	16.98	-	-	-	A	184040638	-	A	184040637	7	5	758	1	0	1	1	0	0	0	0	0	5073	933	33	0	1866	0	EIF4G1	3	184040637	Frame_Shift_Ins	INS	-	TCGA-E2-A14U-01A-11D-A228-09	5104555	184040637	13981793	3	66263										
MUC20	0	genome.wustl.edu	37	chr3	195345599	195345599	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gccgctctggaaactcaaacGctgagcgctgagacctcttc	10	14	3	2			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	3	195345599	195345599	G	A	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	silent	c.72	p.T24	0.014	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	13	0	0	3	3	50	-	-	-	A	195345599	G	A	195345599	2	1	758	1	0	0	0	0	0	0	0	1	10048	1102	38	1		1	MUC20	3	195345599	Silent	SNP	G	TCGA-E2-A14U-01A-11D-A228-09	11304962	195345599	2676831	4	66264										
ATP10B	0	genome.wustl.edu	37	chr5	160097653	160097653	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	cgcacatccttccagcacttCtgcacataggtctgctcttt	6	15	3	0			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	5	160097653	160097653	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.492	p.Q164	0.995	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	33	0	0	32	4	11.11	-	-	-	T	160097653	C	T	160097653	2	4	758	1	0	0	0	0	0	0	0	1	1121	912	32	2		2	ATP10B	5	160097653	Silent	SNP	C	TCGA-E2-A14U-01A-11D-A228-09		160097653	20817607	5	66265										
NOTCH4	0	genome.wustl.edu	37	chr6	32169121	32169121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	tgctggtctagggctgggggGctcagtaccaccagcagggc	17	11	2	0			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	6	32169121	32169121	G	T	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.3912	p.S1304R	0.999	pirsf_Notch,prints_Notch_4	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	33	0	0	22	4	15.38	-	-	-	T	32169121	G	T	32169121	3	4	758	1	0	0	0	0	1	0	0	0	10623	1194	42	4	2135	4	NOTCH4	6	32169121	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		32169121	138945946	6	66266										
INTS1	0	genome.wustl.edu	37	chr7	1538684	1538684	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	ccttatagccgcaggtggagGtgaggagccgcaggaggttc	17	9	0	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	7	1538684	1538684	G	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.1448	p.T483N	1.000	pfam_DUF3677	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	32	0	0	36	4	10	-	-	-	T	1538684	G	T	1538684	3	4	758	1	0	0	0	0	1	0	0	0	7829	1261	44	4	5672	4	INTS1	7	1538684	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		1538684	157599979	7	66267										
KCNS2	0	genome.wustl.edu	37	chr8	99440759	99440759	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gacaaccccggctactcagtGctgagcagggtcttcagcat	11	13	3	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	8	99440759	99440759	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	69_37n	1	known	silent	c.552	p.V184	0.918	prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486	31	0	0	30	4	11.76	-	-	-	A	99440759	G	A	99440759	2	1	758	1	0	0	0	0	0	0	0	1	8143	1306	46	4		4	KCNS2	8	99440759	Silent	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		99440759	46923263	8	66268										
FOLH1	0	genome.wustl.edu	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	36	0	0	29	5	14.71	-	-	-	T	49204779	C	T	49204779	3	4	758	1	0	0	0	0	1	0	0	0	6025	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-E2-A14U-01A-11D-A228-09		49204779	85801737	9	66269			1	110		2	2	12	N	C_A	5.685332e-06
FOLH1	0	genome.wustl.edu	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	38	0	0	18	5	21.74	-	-	-	G	49204790	A	G	49204790	2	3	758	1	0	0	0	0	0	0	0	1	6025	224	8	5		5	FOLH1	11	49204790	Silent	SNP	A	TCGA-E2-A14U-01A-11D-A228-09	11	49204790	85801726	10	66270			1	110		2	2	12	N	C_A	5.685332e-06
GRAMD1B	0	genome.wustl.edu	37	chr11	123484325	123484325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gatgagcccggtcaccacgcCcacagatgaggatgtgggcc	14	13	1	3			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	11	123484325	123484325	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	69_37n	1	known	missense	c.1757	p.P586L	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171	27	0	0	28	5	15.15	-	-	-	T	123484325	C	T	123484325	3	4	758	1	0	0	0	0	1	0	0	0	6799	623	22	4	1815	4	GRAMD1B	11	123484325	Missense_Mutation	SNP	C	TCGA-E2-A14U-01A-11D-A228-09	74279535	123484325	11522191	11	66271										
ARHGEF7	0	genome.wustl.edu	37	chr13	111953173	111953173	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	ggaagaaactaaaagtaatgGtcagacagtgatagaagaaa	11	3	1	5			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	13	111953173	111953173	G	T	SNP	ARHGEF7	ENST00000370623	human	ensembl	69_37n	1	known	missense	c.1997	p.G666V	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CH-domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	19	0	0	17	4	19.05	-	-	-	T	111953173	G	T	111953173	3	4	758	1	0	0	0	0	1	0	0	0	913	1261	44	4	2573	4	ARHGEF7	13	111953173	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		111953173	3216705	12	66272										
MAPT	0	genome.wustl.edu	37	chr17	44061292	44061292	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gtcagccgggtccctcaactCaaaggtctgtgtcttgagct	11	12	5	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	17	44061292	44061292	C	A	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	silent	c.1122	p.L374	1.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	42	0	0	62	7	10.14	-	-	-	A	44061292	C	A	44061292	2	1	758	1	0	0	0	0	0	0	0	1	9368	813	29	2		2	MAPT	17	44061292	Silent	SNP	C	TCGA-E2-A14U-01A-11D-A228-09		44061292	37133918	13	66273										
IL27RA	0	genome.wustl.edu	37	chr19	14161654	14161654	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gacagcatctaccatcgctgGacagggccctcctggtccca	10	16	1	0			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	19	14161654	14161654	G	T	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.1487	p.G496V	0.987	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	28	0	0	26	4	13.33	-	-	-	T	14161654	G	T	14161654	3	4	758	1	0	0	0	0	1	0	0	0	7735	1174	41	2	1529	2	IL27RA	19	14161654	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		14161654	44967329	14	66274										
NCOA6	0	genome.wustl.edu	37	chr20	33328866	33328866	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	ggctcgtgagctaaggaccaAaggtcgacctgtctggatgt	14	9	1	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	20	33328866	33328866	A	T	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.5194	p.L1732M	0.439	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	63	0	0	57	13	18.57	-	-	-	T	33328866	A	T	33328866	3	4	758	1	0	0	0	0	1	0	0	0	10305	11	1	5	1017	5	NCOA6	20	33328866	Missense_Mutation	SNP	A	TCGA-E2-A14U-01A-11D-A228-09		33328866	29696654	15	66275										
C21orf58	0	genome.wustl.edu	37	chr21	47722406	47722406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	2	0.53675285422624	2.23404255319149	NA	2.23404255319149	0.4	0.991179622791967	0	gggctaagcctacctgcaggGctgggggcagggccttgagc	18	11	0	1			TCGA-E2-A14U-01A-11D-A228-09	TCGA-E2-A14U-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	21ab25e4-107c-4257-8d60-cb912587fbf6	e5a4fdab-9e5e-4c17-b01f-8a3e55b08c53	21	47722406	47722406	G	T	SNP	C21orf58	ENST00000291691	human	ensembl	69_37n	-1	known	missense	c.806	p.A269D	0.003	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298	35	0	0	32	4	11.11	-	-	-	T	47722406	G	T	47722406	3	4	758	1	0	0	0	0	1	0	0	0	2149	1203	42	4	170	4	C21orf58	21	47722406	Missense_Mutation	SNP	G	TCGA-E2-A14U-01A-11D-A228-09		47722406	407489	16	66276										
C1orf94	0	genome.wustl.edu	37	chr1	34663261	34663261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	aagtccactgagacatccaaGgtccctgacaacaagaatgt	8	11	0	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	34663261	34663261	G	T	SNP	C1orf94	ENST00000488417	human	ensembl	69_37n	1	known	missense	c.756	p.K252N	0.997	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698	77	0	0	26	32	55.17	-	-	-	T	34663261	G	T	34663261	3	4	759	1	0	0	0	0	1	0	0	0	2091	991	35	4	762	4	C1orf94	1	34663261	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		34663261	214587360	1	66277										
IGSF9	0	genome.wustl.edu	37	chr1	159900122	159900122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctctgggggatcccaatgcaGgagtaccccccggggtgtcc	14	14	1	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	159900122	159900122	G	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	silent	c.1921	p.L641	0.770	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	61	0	0	56	11	16.18	-	-	-	A	159900122	G	A	159900122	2	1	759	1	0	0	0	0	0	0	0	1	7659	991	35	4		4	IGSF9	1	159900122	Silent	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	125236861	159900122	89350499	2	66278										
ITLN2	0	genome.wustl.edu	37	chr1	160920836	160920836	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	agagaagtggcaccaaccttGtagtcatcgctcgtggccgc	12	12	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	160920836	160920836	G	C	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	nonsense	c.438	p.Y146*	1.000	superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	219	1	0.45	280	41	12.73	-	-	-	C	160920836	G	C	160920836	4	2	759	1	0	0	0	0	0	1	0	0	7965	1372	48	4	559	4	ITLN2	1	160920836	Nonsense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	1020714	160920836	88329785	3	66279										
CACNA1E	0	genome.wustl.edu	37	chr1	181684488	181684488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	atatagaggaagtcatgctcGctgaagaaaataaaaatgct	9	5	1	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	181684488	181684488	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.1186	p.A396S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	169	0	0	240	37	13.36	-	-	-	T	181684488	G	T	181684488	3	4	759	1	0	0	0	0	1	0	0	0	2567	1087	38	3	1220	3	CACNA1E	1	181684488	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	20763652	181684488	67566133	4	66280										
CFH	0	genome.wustl.edu	37	chr1	196694377	196694377	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tacaatagttggacctaattCcgttcagtgctaccactttg	7	10	1	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	196694377	196694377	C	A	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.1823	p.S608Y	0.020	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	178	0	0	222	38	14.56	-	-	-	A	196694377	C	A	196694377	3	1	759	1	0	0	0	0	1	0	0	0	3312	855	30	2	1887	2	CFH	1	196694377	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	15009889	196694377	52556244	5	66281										
DISP1	0	genome.wustl.edu	37	chr1	223176630	223176630	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttagcaacattacagcaatcCgatgctttggggtttatgcg	10	8	0	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	223176630	223176630	C	T	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	nonsense	c.1891	p.R631*	0.935	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	116	0	0	121	98	44.75	-	-	-	T	223176630	C	T	223176630	4	4	759	1	0	0	0	0	0	1	0	0	4575	644	23	1	1917	1	DISP1	1	223176630	Nonsense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	26482253	223176630	26073991	6	66282										
RYR2	0	genome.wustl.edu	37	chr1	237777585	237777585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tcctatgccactgccaggctCatgatgaacaacgagtacat	8	12	1	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	1	237777585	237777585	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.5151	p.L1717	0.901	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	81	0	0	83	21	20.19	-	-	-	T	237777585	C	T	237777585	2	4	759	1	0	0	0	0	0	0	0	1	13855	813	29	2		2	RYR2	1	237777585	Silent	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	14600955	237777585	11473036	7	66283										
EHBP1	0	genome.wustl.edu	37	chr2	63169992	63169992	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	atcgtggagaaatggtttatCtttttgtgcaatattacacc	8	6	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	2	63169992	63169992	C	G	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.1430	p.S477C	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	119	0	0	92	26	22.03	-	-	-	G	63169992	C	G	63169992	3	3	759	1	0	0	0	0	1	0	0	0	5010	913	32	2	1472	2	EHBP1	2	63169992	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		63169992	180029381	8	66284										
AAK1	0	genome.wustl.edu	37	chr2	69870164	69870166	+	In_Frame_Del	DEL	CTT	CTT	-													0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tctcgccgggagtcgaaaaaCttcttcatcttgcgaatagg							TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	2	69870164	69870166	CTT	-	DEL	AAK1	ENST00000409085	human	ensembl	69_37n	-1	known	in_frame_del	c.9_7	p.K3in_frame_del	1.000:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AAK1	HGNC	ENSG00000115977	29	0	0	27	9	25	-	-	-	-	69870166	CTT	-	69870164	7	5	759	1	0	1	0	1	0	0	0	0	16	564	20	0	2960	0	AAK1	2	69870164	In_Frame_Del	DEL	CTT	TCGA-E2-A14V-01A-11D-A12B-09	6700172	69870164	173329209	9	66285										
DIRC1	0	genome.wustl.edu	37	chr2	189599494	189599494	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	aggctccaatgttgcagcagCagaagaacaattttgagcat	10	8	0	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	2	189599494	189599494	C	A	SNP	DIRC1	ENST00000308100	human	ensembl	69_37n	-1	known	missense	c.154	p.A52S	0.000	NULL	NULL	-	no_errors	DIRC1	HGNC	ENSG00000174325	390	3	0.76	253	69	21.43	-	-	-	A	189599494	C	A	189599494	3	1	759	1	0	0	0	0	1	0	0	0	4569	710	25	4	164	4	DIRC1	2	189599494	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	119729330	189599494	53599879	10	66286										
SCN5A	0	genome.wustl.edu	37	chr3	38592777	38592777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cagcatgctgttggcgaaggTctggaagttgaacatgtcgt	14	7	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	3	38592777	38592777	T	C	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.5086	p.T1696A	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	178	1	0.53	141	49	24.87	-	-	-	C	38592777	T	C	38592777	3	2	759	1	0	0	0	0	1	0	0	0	14010	1667	58	5	968	5	SCN5A	3	38592777	Missense_Mutation	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09		38592777	159429653	11	66287										
SETD2	0	genome.wustl.edu	37	chr3	47158198	47158198	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	atctttagaaagaggtgtacActcacactgcattcgcttaa	7	9	2	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	3	47158198	47158198	A	G	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.4501	p.C1501R	1.000	smart_AWS,pfscan_AWS	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	273	2	0.72	152	35	18.72	-	-	-	G	47158198	A	G	47158198	3	3	759	1	0	0	0	0	1	0	0	0	14219	159	6	5	3265	5	SETD2	3	47158198	Missense_Mutation	SNP	A	TCGA-E2-A14V-01A-11D-A12B-09	8565421	47158198	150864232	12	66288										
ARHGAP31	0	genome.wustl.edu	37	chr3	119099788	119099788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccctgaagaaggccaactggCccgaatccaaaatgttatcc	8	13	0	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	3	119099788	119099788	C	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.386	p.A129D	0.999	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	157	0	0	129	34	20.73	-	-	-	A	119099788	C	A	119099788	3	1	759	1	0	0	0	0	1	0	0	0	882	739	26	4	400	4	ARHGAP31	3	119099788	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	71941590	119099788	78922642	13	66289										
PAQR9	0	genome.wustl.edu	37	chr3	142681942	142681942	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttgagcgtctcgttggtaggCttcagcaccgaggctaggca	14	10	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	3	142681942	142681942	C	G	SNP	PAQR9	ENST00000340634	human	ensembl	69_37n	-1	known	missense	c.237	p.K79N	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582	89	0	0	61	10	14.08	-	-	-	G	142681942	C	G	142681942	3	3	759	1	0	0	0	0	1	0	0	0	11515	796	28	4	900	4	PAQR9	3	142681942	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	23582154	142681942	55340488	14	66290										
PIK3CA	0	genome.wustl.edu	37	chr3	178952075	178952075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	agtatttcatgaaacaaatgAatgatgcacatcatggtggc	9	6	2	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	3	178952075	178952075	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3130	p.N1044Y	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	201	0	0	110	74	40.22	-	-	-	T	178952075	A	T	178952075	3	4	759	1	0	0	0	0	1	0	0	0	11987	246	9	5	3208	5	PIK3CA	3	178952075	Missense_Mutation	SNP	A	TCGA-E2-A14V-01A-11D-A12B-09	36270133	178952075	19070355	15	66291										
DGKQ	0	genome.wustl.edu	37	chr4	955823	955823	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gcctggtggaagtccaggctCagctccgcgtcgatgccaat	13	13	1	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	4	955823	955823	C	G	SNP	DGKQ	ENST00000509465	human	ensembl	69_37n	-1	novel	nonstop	c.2063	p.*688S	0.989	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ras-assoc,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DGKQ	HGNC	ENSG00000145214	81	0	0	75	11	12.79	-	-	-	G	955823	C	G	955823	4	3	759	1	0	0	0	0	0	0	0	0	4509	813	29	2	586	2	DGKQ	4	955823	Nonstop_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		955823	190198453	16	66292										
WDFY3	0	genome.wustl.edu	37	chr4	85642669	85642669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttgtagctgctcctggttctCctcatctcctccatcaggtg	8	14	4	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	4	85642669	85642669	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.7498	p.E2500K	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	327	0	0	253	70	21.67	-	-	-	T	85642669	C	T	85642669	3	4	759	1	0	0	0	0	1	0	0	0	17367	864	30	2	3170	2	WDFY3	4	85642669	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	84686846	85642669	105511607	17	66293										
CDH9	0	genome.wustl.edu	37	chr5	26885845	26885845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gattatcgcaggcacacacaCggatagtgagtgtaccagtg	12	9	0	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	26885845	26885845	C	T	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.1760	p.R587H	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	95	0	0	53	36	40.45	-	-	-	T	26885845	C	T	26885845	3	4	759	1	0	0	0	0	1	0	0	0	3146	536	19	1	617	1	CDH9	5	26885845	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		26885845	154029415	18	66294										
SLCO6A1	0	genome.wustl.edu	37	chr5	101813402	101813402	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	aaatagataccagctgagtgTgtagcaacattctcatcaat	7	8	2	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	101813402	101813402	T	A	SNP	SLCO6A1	ENST00000379807	human	ensembl	69_37n	-1	known	silent	c.780	p.T260	0.001	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	191	1	0.52	139	50	26.46	-	-	-	A	101813402	T	A	101813402	2	1	759	1	0	0	0	0	0	0	0	1	14821	1683	59	5		5	SLCO6A1	5	101813402	Silent	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	74927557	101813402	79101858	19	66295										
PPIP5K2	0	genome.wustl.edu	37	chr5	102482291	102482291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tggggaagtttttcaaaagcCatttgtagaaaagccagtca	10	6	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	102482291	102482291	C	T	SNP	PPIP5K2	ENST00000358359	human	ensembl	69_37n	1	known	missense	c.548	p.P183L	1.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	307	2	0.65	294	54	15.47	-	-	-	T	102482291	C	T	102482291	3	4	759	1	0	0	0	0	1	0	0	0	12410	594	21	4	566	4	PPIP5K2	5	102482291	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	668889	102482291	78432969	20	66296										
WDR36	0	genome.wustl.edu	37	chr5	110447003	110447003	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	acaaactctaactaataaaaCttgactcatttctacttttg	2	9	3	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	110447003	110447003	C	A	SNP	WDR36	ENST00000505303	human	ensembl	69_37n	1	novel	missense	c.1742	p.T581N	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	115	0	0	70	19	21.35	-	-	-	A	110447003	C	A	110447003	3	1	759	1	0	0	0	0	1	0	0	0	17387	580	20	4		4	WDR36	5	110447003	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	7964712	110447003	70468257	21	66297										
PCDHB6	0	genome.wustl.edu	37	chr5	140531491	140531491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gtgcgcttgctggtgctggaCgccaacgacaactcgccctt	12	14	0	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	140531491	140531491	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	1	known	silent	c.1653	p.D551	0.997	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	42	0	0	33	11	25	-	-	-	T	140531491	C	T	140531491	2	4	759	1	0	0	0	0	0	0	0	1	11619	535	19	1		1	PCDHB6	5	140531491	Silent	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	30084488	140531491	40383769	22	66298										
SYNPO	0	genome.wustl.edu	37	chr5	150028362	150028362	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	accttctccagagaagctacGctcatccccagctccaggcc	7	18	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	5	150028362	150028362	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	1	known	silent	c.1257	p.T419	0.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	170	1	0.58	121	28	18.54	-	-	-	A	150028362	G	A	150028362	2	1	759	1	0	0	0	0	0	0	0	1	15548	1074	38	1		1	SYNPO	5	150028362	Silent	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	9496871	150028362	30886898	23	66299										
EXOC2	0	genome.wustl.edu	37	chr6	497377	497377	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	attttgttacctgtaaagctCcatttttgctgaaggatgaa	8	6	0	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	6	497377	497377	C	G	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	missense	c.2549	p.G850A	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	279	0	0	177	37	17.29	-	-	-	G	497377	C	G	497377	3	3	759	1	0	0	0	0	1	0	0	0	5338	855	30	2	241	2	EXOC2	6	497377	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		497377	170617690	24	66300										
KIAA0319	0	genome.wustl.edu	37	chr6	24566862	24566862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ggccatcccggatccacagaTaggacacaattctttggtca	9	12	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	6	24566862	24566862	T	C	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.2255	p.Y752C	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_Fibronectin_type3,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	128	0	0	134	29	17.79	-	-	-	C	24566862	T	C	24566862	3	2	759	1	0	0	0	0	1	0	0	0	8220	1406	49	5	995	5	KIAA0319	6	24566862	Missense_Mutation	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	24069485	24566862	146548205	25	66301										
CDCA7L	0	genome.wustl.edu	37	chr7	21946010	21946010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tctcaggaggccgcgcactcCgggttgggttcatacgccgc	14	14	2	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	7	21946010	21946010	C	T	SNP	CDCA7L	ENST00000406877	human	ensembl	69_37n	-1	known	missense	c.818	p.R273Q	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649	84	0	0	86	23	20.72	-	-	-	T	21946010	C	T	21946010	3	4	759	1	0	0	0	0	1	0	0	0	3120	652	23	1	566	1	CDCA7L	7	21946010	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		21946010	137192653	26	66302										
ASZ1	0	genome.wustl.edu	37	chr7	117021097	117021097	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	atcttccctcatggtcaaaaGatgtcttaacgttatatccc	5	11	4	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	7	117021097	117021097	G	C	SNP	ASZ1	ENST00000284629	human	ensembl	69_37n	-1	known	missense	c.913	p.L305V	0.998	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ASZ1	HGNC	ENSG00000154438	244	0	0	237	36	13.19	-	-	-	C	117021097	G	C	117021097	3	2	759	1	0	0	0	0	1	0	0	0	1073	942	33	2	534	2	ASZ1	7	117021097	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	95075087	117021097	42117566	27	66303										
LPL	0	genome.wustl.edu	37	chr8	19805748	19805748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cctaaggacccctgaagacaCagctgaggacacttgccacc	9	15	0	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	8	19805748	19805748	C	T	SNP	LPL	ENST00000311322	human	ensembl	69_37n	1	known	missense	c.146	p.T49I	1.000	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipo_Lipase,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_Lipo_Lipase,prints_Lipase,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445	249	1	0.4	164	33	16.75	-	-	-	T	19805748	C	T	19805748	3	4	759	1	0	0	0	0	1	0	0	0	8987	478	17	4	152	4	LPL	8	19805748	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		19805748	126558274	28	66304										
ENTPD4	0	genome.wustl.edu	37	chr8	23302096	23302096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gtaatcactgactttctctgGagaggtagcaaattctgaaa	9	7	3	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	8	23302096	23302096	G	C	SNP	ENTPD4	ENST00000358689	human	ensembl	69_37n	-1	known	missense	c.436	p.P146A	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217	250	0	0	138	38	21.35	-	-	-	C	23302096	G	C	23302096	3	2	759	1	0	0	0	0	1	0	0	0	5178	1174	41	2	1450	2	ENTPD4	8	23302096	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	3496348	23302096	123061926	29	66305										
ADAM2	0	genome.wustl.edu	37	chr8	39695672	39695672	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctgtccatccgcagcccgccGagcccgctgagcagaaacaa	10	17	0	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	8	39695672	39695672	G	A	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	silent	c.33	p.L11	0.073	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	220	0	0	98	40	28.78	-	-	-	A	39695672	G	A	39695672	2	1	759	1	0	0	0	0	0	0	0	1	241	1045	37	1		1	ADAM2	8	39695672	Silent	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	16393576	39695672	106668350	30	66306										
MTBP	0	genome.wustl.edu	37	chr8	121468800	121468800	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cttttttttatagaaactgtCagaaaattgcagaatacctt	5	6	1	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	8	121468800	121468800	C	G	SNP	MTBP	ENST00000305949	human	ensembl	69_37n	1	known	missense	c.637	p.Q213E	1.000	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167	202	0	0	135	27	16.56	-	-	-	G	121468800	C	G	121468800	3	3	759	1	0	0	0	0	1	0	0	0	9984	827	29	2	663	2	MTBP	8	121468800	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	81773128	121468800	24895222	31	66307										
RNF139	0	genome.wustl.edu	37	chr8	125498596	125498596	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ggaagaggattcgtttcccaGacatactacgagtcttttgg	11	8	1	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	8	125498596	125498596	G	A	SNP	RNF139	ENST00000303545	human	ensembl	69_37n	1	known	missense	c.706	p.D236N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881	212	1	0.47	200	47	18.73	-	-	-	A	125498596	G	A	125498596	3	1	759	1	0	0	0	0	1	0	0	0	13528	942	33	2	712	2	RNF139	8	125498596	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	4029796	125498596	20865426	32	66308										
OMD	0	genome.wustl.edu	37	chr9	95178955	95178956	+	Frame_Shift_Ins	INS	-	-	TGCT													0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	aaatttcttggaatatagaaINStgcttgcttcaatttgttgt							TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	9	95178955	95178956	-	TGCT	INS	OMD	ENST00000375550	human	ensembl	69_37n	-1	known	frame_shift_ins	c.886_885	p.F295fs	1.000:0.998	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMD	HGNC	ENSG00000127083	259	0	0	203	28	12.12	-	-	-	TGCT	95178956	-	TGCT	95178955	7	5	759	1	0	1	1	0	0	0	0	0	10938	101	4	0	387	0	OMD	9	95178955	Frame_Shift_Ins	INS	-	TCGA-E2-A14V-01A-11D-A12B-09		95178955	46034476	33	66309										
ZNF483	0	genome.wustl.edu	37	chr9	114305318	114305318	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tattgtggtgcaacctttagTcgaagctcaatccttgtaga	9	8	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	9	114305318	114305318	T	C	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	1	known	silent	c.2103	p.S701	0.201	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	106	0	0	68	25	26.88	-	-	-	C	114305318	T	C	114305318	2	2	759	1	0	0	0	0	0	0	0	1	18032	1664	58	5		5	ZNF483	9	114305318	Silent	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	19126363	114305318	26908113	34	66310										
PHYH	0	genome.wustl.edu	37	chr10	13320306	13320306	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tagcagatggctatttcaaaGattggttctttctcctttca	7	8	4	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	10	13320306	13320306	G	C	SNP	PHYH	ENST00000263038	human	ensembl	69_37n	-1	known	missense	c.1012	p.L338V	1.000	NULL	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537	301	0	0	384	118	23.51	-	-	-	C	13320306	G	C	13320306	3	2	759	1	0	0	0	0	1	0	0	0	11938	942	33	2	8	2	PHYH	10	13320306	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		13320306	122214441	35	66311										
ITPRIP	0	genome.wustl.edu	37	chr10	106075563	106075563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccagaggtcccaggccacgcGtgtctcgttctgctgcctgc	12	16	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	10	106075563	106075563	G	A	SNP	ITPRIP	ENST00000278071	human	ensembl	69_37n	-1	known	missense	c.247	p.R83C	0.001	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841	24	0	0	24	6	20	-	-	-	A	106075563	G	A	106075563	3	1	759	1	0	0	0	0	1	0	0	0	7977	1145	40	1	1400	1	ITPRIP	10	106075563	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	92755257	106075563	29459184	36	66312										
SORCS3	0	genome.wustl.edu	37	chr10	106737218	106737218	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctctttcatcccaagcaagaGgactgggtgctggcctacag	11	12	2	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	10	106737218	106737218	G	A	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	silent	c.921	p.E307	0.998	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	254	0	0	199	45	18.44	-	-	-	A	106737218	G	A	106737218	2	1	759	1	0	0	0	0	0	0	0	1	15021	991	35	4		4	SORCS3	10	106737218	Silent	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	661655	106737218	28797529	37	66313										
SLC22A18	0	genome.wustl.edu	37	chr11	2943415	2943415	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gccagcgtgctggtcttcatCgtggtgggcctggccatggt	16	11	2	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	11	2943415	2943415	C	A	SNP	SLC22A18	ENST00000312221	human	ensembl	69_37n	1	known	silent	c.948	p.I316	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC22A18	HGNC	ENSG00000110628	64	0	0	48	24	33.33	-	-	-	A	2943415	C	A	2943415	2	1	759	1	0	0	0	0	0	0	0	1	14538	874	31	3		3	SLC22A18	11	2943415	Silent	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		2943415	132063101	38	66314										
CYB5R2	0	genome.wustl.edu	37	chr11	7689777	7689777	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gctcactcgtctggtctggtCtgattccaagattccctgga	10	12	4	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	11	7689777	7689777	C	G	SNP	CYB5R2	ENST00000299498	human	ensembl	69_37n	-1	known	missense	c.404	p.R135T	0.890	NULL	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394	347	0	0	299	61	16.85	-	-	-	G	7689777	C	G	7689777	3	3	759	1	0	0	0	0	1	0	0	0	4158	913	32	2	442	2	CYB5R2	11	7689777	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	4746362	7689777	127316739	39	66315										
AGAP2	0	genome.wustl.edu	37	chr12	58125611	58125611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccgcaaaaaggctggtcctgCgcttggctgcccggtgcagg	15	13	0	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	12	58125611	58125611	C	A	SNP	AGAP2	ENST00000547588	human	ensembl	69_37n	-1	known	missense	c.1934	p.R645L	0.999	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	50	0	0	29	10	25.64	-	-	-	A	58125611	C	A	58125611	3	1	759	1	0	0	0	0	1	0	0	0	368	768	27	3	1692	3	AGAP2	12	58125611	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		58125611	75726284	40	66316										
RAB21	0	genome.wustl.edu	37	chr12	72176409	72176409	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	agccaaacagaacaaaggaaTtgaggaactctttcttgacc	8	9	2	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	12	72176409	72176409	T	C	SNP	RAB21	ENST00000261263	human	ensembl	69_37n	1	known	missense	c.506	p.I169T	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB21	HGNC	ENSG00000080371	408	1	0.24	335	67	16.54	-	-	-	C	72176409	T	C	72176409	3	2	759	1	0	0	0	0	1	0	0	0	12991	1493	52	5	528	5	RAB21	12	72176409	Missense_Mutation	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	14050798	72176409	61675486	41	66317										
GCN1L1	0	genome.wustl.edu	37	chr12	120613011	120613011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	acaacagttagttttccttcCgagcctgagaagagagacag	10	9	0	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	12	120613011	120613011	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	silent	c.1047	p.S349	0.051	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	168	0	0	131	29	17.9	-	-	-	T	120613011	C	T	120613011	2	4	759	1	0	0	0	0	0	0	0	1	6349	639	23	1		1	GCN1L1	12	120613011	Silent	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	48436602	120613011	13238884	42	66318										
OR11H6	0	genome.wustl.edu	37	chr14	20691885	20691885	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccaaatgttctttattattcAttctttggttacttctgttt	4	7	4	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	14	20691885	20691885	A	T	SNP	OR11H6	ENST00000315519	human	ensembl	69_37n	1	known	missense	c.17	p.H6L	0.728	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H6	HGNC	ENSG00000176219	80	0	0	58	19	24.68	-	-	-	T	20691885	A	T	20691885	3	4	759	1	0	0	0	0	1	0	0	0	11002	217	8	5	19	5	OR11H6	14	20691885	Missense_Mutation	SNP	A	TCGA-E2-A14V-01A-11D-A12B-09		20691885	86657655	43	66319										
SLC7A7	0	genome.wustl.edu	37	chr14	23248035	23248035	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tgatctcttcagtgacatagTtgagggtgtcccagcctgag	12	9	2	4			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	14	23248035	23248035	T	G	SNP	SLC7A7	ENST00000285850	human	ensembl	69_37n	-1	known	missense	c.737	p.N246T	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A7	HGNC	ENSG00000155465	205	0	0	168	49	22.37	-	-	-	G	23248035	T	G	23248035	3	3	759	1	0	0	0	0	1	0	0	0	14792	1725	60	5	826	5	SLC7A7	14	23248035	Missense_Mutation	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	2556150	23248035	84101505	44	66320										
EIF2S1	0	genome.wustl.edu	37	chr14	67847477	67847477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cccacaggctgtcaaaattcGagcaggtaaatgatttttta	8	8	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	14	67847477	67847477	G	A	SNP	EIF2S1	ENST00000256383	human	ensembl	69_37n	1	known	missense	c.575	p.R192Q	1.000	pfam_TIF_2_asu,superfamily_TIF2_asu_C	pfam_TIF_2_asu,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_TIF2_asu_C,superfamily_TIF2_asu_middle,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	EIF2S1	HGNC	ENSG00000134001	103	0	0	53	22	29.33	-	-	-	A	67847477	G	A	67847477	3	1	759	1	0	0	0	0	1	0	0	0	5044	1058	37	1	589	1	EIF2S1	14	67847477	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	44599442	67847477	39502063	45	66321										
PIGB	0	genome.wustl.edu	37	chr15	55647072	55647072	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gaaaaagtcattatcttgatGaagcagatgtattttaccta	7	5	2	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	15	55647072	55647072	G	A	SNP	PIGB	ENST00000164305	human	ensembl	69_37n	1	known	missense	c.1414	p.E472K	1.000	NULL	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943	259	0	0	151	47	23.74	-	-	-	A	55647072	G	A	55647072	3	1	759	1	0	0	0	0	1	0	0	0	11959	1291	45	2	1456	2	PIGB	15	55647072	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		55647072	46884320	46	66322										
EFTUD1	0	genome.wustl.edu	37	chr15	82450123	82450123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tgactaaaacgtgctctcccGtttcctgaattaaaatctgg	7	10	2	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	15	82450123	82450123	G	A	SNP	EFTUD1	ENST00000268206	human	ensembl	69_37n	-1	known	missense	c.1961	p.T654M	1.000	superfamily_Elongation_fac_G/III/V	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598	263	0	0	145	93	39.08	-	-	-	A	82450123	G	A	82450123	3	1	759	1	0	0	0	0	1	0	0	0	4995	1145	40	1	1417	1	EFTUD1	15	82450123	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	26803051	82450123	20081269	47	66323										
NLRC3	0	genome.wustl.edu	37	chr16	3611719	3611719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttacctgatcttctgaatgcGacagtccttcccactcagca	6	14	3	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	16	3611719	3611719	G	A	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	missense	c.2140	p.R714C	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	71	0	0	87	13	12.87	-	-	-	A	3611719	G	A	3611719	3	1	759	1	0	0	0	0	1	0	0	0	10540	1058	37	1	1259	1	NLRC3	16	3611719	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		3611719	86743034	48	66324										
SMG1	0	genome.wustl.edu	37	chr16	18903661	18903662	+	Frame_Shift_Ins	INS	-	-	AA													0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cagtcgagactcatcagaatINSaagacatcgatctctctgtg							TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	16	18903661	18903662	-	AA	INS	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	frame_shift_ins	c.428_427	p.Y143fs	1.000:1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	190	0	0	142	29	16.96	-	-	-	AA	18903662	-	AA	18903661	7	5	759	1	0	1	1	0	0	0	0	0	14884	1406	49	0	10797	0	SMG1	16	18903661	Frame_Shift_Ins	INS	-	TCGA-E2-A14V-01A-11D-A12B-09	15291942	18903661	71451092	49	66325										
PDILT	0	genome.wustl.edu	37	chr16	20387489	20387489	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttctggctaatttgtcgtctCaaccaaacgactaaggcagc	8	11	2	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	16	20387489	20387489	C	G	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.444	p.L148F	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	204	0	0	139	65	31.86	-	-	-	G	20387489	C	G	20387489	3	3	759	1	0	0	0	0	1	0	0	0	11747	825	29	2	1346	2	PDILT	16	20387489	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	1483828	20387489	69967264	50	66326										
DNAH3	0	genome.wustl.edu	37	chr16	20976354	20976354	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	caatgttttcctccaagtccTttttcttggtgttcatctct	5	11	3	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	16	20976354	20976354	T	G	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.8852	p.K2951T	0.004	superfamily_Prefoldin	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	247	0	0	187	111	37.25	-	-	-	G	20976354	T	G	20976354	3	3	759	1	0	0	0	0	1	0	0	0	4639	1609	56	5	3537	5	DNAH3	16	20976354	Missense_Mutation	SNP	T	TCGA-E2-A14V-01A-11D-A12B-09	588865	20976354	69378399	51	66327										
SRCAP	0	genome.wustl.edu	37	chr16	30724033	30724033	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccatttaatcattgttcccaCcagcgtgatgttgaactggg	9	10	1	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	16	30724033	30724033	C	G	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.2027	p.T676S	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	285	0	0	248	61	19.68	-	-	-	G	30724033	C	G	30724033	3	3	759	1	0	0	0	0	1	0	0	0	15226	507	18	4	2073	4	SRCAP	16	30724033	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	9747679	30724033	59630720	52	66328										
THRA	0	genome.wustl.edu	37	chr17	38230773	38230773	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gccaagcaaggtggagtgtgGgtcagacccagaggagaaca	16	8	1	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	38230773	38230773	G	T	SNP	THRA	ENST00000264637	human	ensembl	69_37n	1	known	missense	c.32	p.G11V	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351	205	2	0.96	691	235	25.35	-	-	-	T	38230773	G	T	38230773	3	4	759	1	0	0	0	0	1	0	0	0	15968	1232	43	4	34	4	THRA	17	38230773	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		38230773	42964437	53	66329										
FAM117A	0	genome.wustl.edu	37	chr17	47866424	47866424	+	Splice_Site	DEL	C	C	-													0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctattcccgccctctgcttgCctggatcggaggcgttctta							TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	47866424	47866424	C	-	DEL	FAM117A	ENST00000505159	human	ensembl	69_37n	-1	known	splice_site_del	c.NULL	NULL	0.992	-	-	-	no_errors	FAM117A	HGNC	ENSG00000121104	22	0	0	161	45	21.74	-	-	-	-	47866424	C	-	47866424	8	5	759	1	0	1	0	1	0	0	1	0	5449	754	26	0		0	FAM117A	17	47866424	Splice_Site	DEL	C	TCGA-E2-A14V-01A-11D-A12B-09	9635651	47866424	33328786	54	66330	479	2								
FAM117A	0	genome.wustl.edu	37	chr17	47866431	47866431	+	RNA	SNP	C	C	A													0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cgccctctgcttgcctggatCggaggcgttcttattaattg							TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	47866431	47866431	C	A	SNP	FAM117A	ENST00000505159	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	FAM117A	HGNC	ENSG00000121104	20	0	0	144	45	23.81	-	-	-	A	47866431	C	A	47866431	1	1	759	0	1	0	0	0	0	0	0	0	5449	899	31	3		3	FAM117A	17	47866431	RNA	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	7	47866431	33328779	55	66331	479	2								
RSAD1	0	genome.wustl.edu	37	chr17	48560768	48560768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gaggctcggatccagacactGgagcctgacaactggatgaa	13	10	0	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	48560768	48560768	G	T	SNP	RSAD1	ENST00000515221	human	ensembl	69_37n	1	known	missense	c.569	p.W190L	1.000	NULL	NULL	-	no_errors	RSAD1	HGNC	ENSG00000136444	101	1	0.98	144	19	11.59	-	-	-	T	48560768	G	T	48560768	3	4	759	1	0	0	0	0	1	0	0	0	13780	1335	47	4	994	4	RSAD1	17	48560768	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	694337	48560768	32634442	56	66332										
MBTD1	0	genome.wustl.edu	37	chr17	49270286	49270286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tcaagagacgatgaataattCgagttactgtggctacacat	9	7	1	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	49270286	49270286	C	T	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.1547	p.R516Q	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	272	1	0.36	343	134	28.09	-	-	-	T	49270286	C	T	49270286	3	4	759	1	0	0	0	0	1	0	0	0	9431	884	31	1	351	1	MBTD1	17	49270286	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	709518	49270286	31924924	57	66333										
KCNJ16	0	genome.wustl.edu	37	chr17	68128510	68128510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tttggctctgtcttttggctCatagcctttcatcatggcga	9	10	5	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	17	68128510	68128510	C	T	SNP	KCNJ16	ENST00000283936	human	ensembl	69_37n	1	known	silent	c.282	p.L94	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ16	HGNC	ENSG00000153822	571	0	0	324	106	24.59	-	-	-	T	68128510	C	T	68128510	2	4	759	1	0	0	0	0	0	0	0	1	8104	813	29	2		2	KCNJ16	17	68128510	Silent	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	18858224	68128510	13066700	58	66334										
LAMA1	0	genome.wustl.edu	37	chr18	6942104	6942104	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctcggtcccaggacaggaatGaaggaaaactccgtgcagtt	12	10	0	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	18	6942104	6942104	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.9202	p.H3068Y	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	140	0	0	83	27	24.55	-	-	-	A	6942104	G	A	6942104	3	1	759	1	0	0	0	0	1	0	0	0	8659	1290	45	2	29	2	LAMA1	18	6942104	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		6942104	71135144	59	66335										
OR7G1	0	genome.wustl.edu	37	chr19	9226091	9226091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	atagcggtcgtaggccatgaCtgcaagaaagcaactttcca	10	10	0	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	19	9226091	9226091	C	A	SNP	OR7G1	ENST00000293614	human	ensembl	69_37n	-1	known	missense	c.349	p.V117F	0.011	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807	218	0	0	190	53	21.81	-	-	-	A	9226091	C	A	9226091	3	1	759	1	0	0	0	0	1	0	0	0	11295	565	20	4	660	4	OR7G1	19	9226091	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		9226091	49902892	60	66336										
ZSWIM4	0	genome.wustl.edu	37	chr19	13941680	13941680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ctacatcaccaccagccactCgcgcctcacgcacatcagcc	5	21	3	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	19	13941680	13941680	C	T	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.2786	p.S929L	0.997	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	45	0	0	25	12	32.43	-	-	-	T	13941680	C	T	13941680	3	4	759	1	0	0	0	0	1	0	0	0	18334	893	31	1	2836	1	ZSWIM4	19	13941680	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	4715589	13941680	45187303	61	66337										
BIRC8	0	genome.wustl.edu	37	chr19	53793014	53793014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gtttacaagtgaccagatgtCcacaaggaataaaaacaaca	7	8	0	2			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	19	53793014	53793014	C	T	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	missense	c.614	p.G205E	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	221	1	0.45	161	58	26.48	-	-	-	T	53793014	C	T	53793014	3	4	759	1	0	0	0	0	1	0	0	0	1445	855	30	2	100	2	BIRC8	19	53793014	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	39851334	53793014	5335969	62	66338										
ZNF530	0	genome.wustl.edu	37	chr19	58117885	58117885	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gtgcagtgaatgtgggaaatCttttagccacagcactaacc	10	9	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	19	58117885	58117885	C	A	SNP	ZNF530	ENST00000332854	human	ensembl	69_37n	1	known	missense	c.992	p.S331Y	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647	272	0	0	180	53	22.75	-	-	-	A	58117885	C	A	58117885	3	1	759	1	0	0	0	0	1	0	0	0	18067	913	32	2	1002	2	ZNF530	19	58117885	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	4324871	58117885	1011098	63	66339										
CHGB	0	genome.wustl.edu	37	chr20	5903673	5903673	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	gcaggcccgacaggtcctctCaaggagggagtcttccctct	12	14	3	0			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	20	5903673	5903673	C	G	SNP	CHGB	ENST00000378961	human	ensembl	69_37n	1	known	missense	c.883	p.Q295E	0.997	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199	73	0	0	105	17	13.82	-	-	-	G	5903673	C	G	5903673	3	3	759	1	0	0	0	0	1	0	0	0	3368	827	29	2	897	2	CHGB	20	5903673	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09		5903673	57121847	64	66340										
SYCP2	0	genome.wustl.edu	37	chr20	58444998	58444998	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ccagagaacttattttttttCtatttacaatagtattactc	3	7	1	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	20	58444998	58444998	C	G	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	missense	c.3596	p.R1199T	0.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	369	0	0	524	68	11.49	-	-	-	G	58444998	C	G	58444998	3	3	759	1	0	0	0	0	1	0	0	0	15524	913	32	2	1036	2	SYCP2	20	58444998	Missense_Mutation	SNP	C	TCGA-E2-A14V-01A-11D-A12B-09	52541325	58444998	4580522	65	66341										
XKR3	0	genome.wustl.edu	37	chr22	17288863	17288863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	ttgagaagataatgctaaaaGgaaagcttagatggagtctc	11	4	1	3			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	22	17288863	17288863	G	T	SNP	XKR3	ENST00000331428	human	ensembl	69_37n	-1	known	missense	c.101	p.P34H	0.709	NULL	pfam_Transport_prot_XK	-	no_errors	XKR3	HGNC	ENSG00000172967	194	0	0	123	33	21.15	-	-	-	T	17288863	G	T	17288863	3	4	759	1	0	0	0	0	1	0	0	0	17529	1000	35	4	1290	4	XKR3	22	17288863	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09		17288863	34015703	66	66342										
UTP14A	0	genome.wustl.edu	37	chrX	129063526	129063526	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	cctgtctgtcatacagaggaAtccaaaacgaatcaccacac	6	13	3	1			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	X	129063526	129063526	A	T	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	1	known	missense	c.2258	p.N753I	0.132	NULL	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	260	0	0	188	23	10.9	-	-	-	T	129063526	A	T	129063526	3	4	759	1	0	0	0	0	1	0	0	0	17192	101	4	5	2316	5	UTP14A	23	129063526	Missense_Mutation	SNP	A	TCGA-E2-A14V-01A-11D-A12B-09		129063526	26207034	67	66343										
FAM58A	0	genome.wustl.edu	37	chrX	152853866	152853866	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.223880597014925	15	0.00465306520615759	2.41475019825535	4.0360824742268	1.50680412371134	0.4794877603643	1	9	tataaatctgaatgagatcaGacacaatattatcaatgatt	5	5	3	4			TCGA-E2-A14V-01A-11D-A12B-09	TCGA-E2-A14V-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	703314fe-bfd5-45d5-9ed5-fcdce8a19fd6	e49f6bc1-0933-4500-9068-aa7d8c276b22	X	152853866	152853866	G	A	SNP	FAM58A	ENST00000406277	human	ensembl	69_37n	-1	known	missense	c.698	p.S233F	1.000	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	FAM58A	HGNC	ENSG00000147382	382	0	0	273	51	15.69	-	-	-	A	152853866	G	A	152853866	3	1	759	1	0	0	0	0	1	0	0	0	5635	942	33	2	46	2	FAM58A	23	152853866	Missense_Mutation	SNP	G	TCGA-E2-A14V-01A-11D-A12B-09	23790340	152853866	2416694	68	66344										
ATP13A2	0	genome.wustl.edu	37	chr1	17316489	17316489	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	cacggtgtagcttgcagcctGgtcaggatcctgggggccca	15	12	1	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	17316489	17316489	G	A	SNP	ATP13A2	ENST00000326735	human	ensembl	69_37n	-1	known	nonsense	c.2422	p.Q808*	0.864	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A2	HGNC	ENSG00000159363	42	0	0	47	19	28.36	-	-	-	A	17316489	G	A	17316489	4	1	760	1	0	0	0	0	0	1	0	0	1128	1357	47	4	1388	4	ATP13A2	1	17316489	Nonsense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09		17316489	231934132	1	66345										
INADL	0	genome.wustl.edu	37	chr1	62293244	62293244	+	Frame_Shift_Del	DEL	C	C	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggcgcactgaaacctctcttCctgagacagaggtactaaat							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	62293244	62293244	C	-	DEL	INADL	ENST00000371158	human	ensembl	69_37n	1	known	frame_shift_del	c.1969	p.P657fs	0.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	334	0	0	174	79	30.74	-	-	-	-	62293244	C	-	62293244	7	5	760	1	0	1	0	1	0	0	0	0	7785	855	30	0	2027	0	INADL	1	62293244	Frame_Shift_Del	DEL	C	TCGA-E2-A14W-01A-11D-A12B-09	44976755	62293244	186957377	2	66346										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112997128	112997130	+	In_Frame_Del	DEL	GAT	GAT	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	cacaggatacggctgaaggaGatgatgtcacctacatgcta							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	112997128	112997130	GAT	-	DEL	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	in_frame_del	c.388_390	p.D131in_frame_del	1.000:1.000:1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	159	0	0	89	32	26.45	-	-	-	-	112997130	GAT	-	112997128	7	5	760	1	0	1	0	1	0	0	0	0	4078	942	33	0	398	0	CTTNBP2NL	1	112997128	In_Frame_Del	DEL	GAT	TCGA-E2-A14W-01A-11D-A12B-09	50703884	112997128	136253493	3	66347										
HFE2	0	genome.wustl.edu	37	chr1	145415526	145415526	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggcatcgaagacctgatgatCcagcacaactgctcccgcca	9	15	0	3			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	145415526	145415526	C	G	SNP	HFE2	ENST00000336751	human	ensembl	69_37n	1	known	missense	c.345	p.I115M	0.338	pfam_RGM_N	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509	8	0	0	15	6	28.57	-	-	-	G	145415526	C	G	145415526	3	3	760	1	0	0	0	0	1	0	0	0	7133	845	30	2	351	2	HFE2	1	145415526	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	32418398	145415526	103835095	4	66348										
ITGA10	0	genome.wustl.edu	37	chr1	145530313	145530313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	attgtcttggatggctccaaCagcatctacccctggtctga	9	12	3	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	145530313	145530313	C	T	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	1	known	silent	c.528	p.N176	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	198	0	0	115	53	31.55	-	-	-	T	145530313	C	T	145530313	2	4	760	1	0	0	0	0	0	0	0	1	7927	477	17	4		4	ITGA10	1	145530313	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	114787	145530313	103720308	5	66349										
OLFML2B	0	genome.wustl.edu	37	chr1	161953515	161953515	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ctggtggccattgtcccaggCatagagcaggcggtccttgg	15	11	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	161953515	161953515	C	G	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.2203	p.A735P	1.000	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	503	1	0.2	321	165	33.88	-	-	-	G	161953515	C	G	161953515	3	3	760	1	0	0	0	0	1	0	0	0	10931	710	25	4	53	4	OLFML2B	1	161953515	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	16423202	161953515	87297106	6	66350										
OR2T34	0	genome.wustl.edu	37	chr1	248737334	248737334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gggaggagcaggtggccaagGccttcctgcggccggcggca	19	12	0	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	1	248737334	248737334	G	T	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.725	p.A242D	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	320	2	0.62	189	99	34.26	-	-	-	T	248737334	G	T	248737334	3	4	760	1	0	0	0	0	1	0	0	0	11098	1203	42	4	235	4	OR2T34	1	248737334	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	86783819	248737334	513287	7	66351										
C2orf43	0	genome.wustl.edu	37	chr2	20886840	20886842	+	In_Frame_Del	DEL	ATA	ATA	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	caccaaggatctatagtaccAtaataaaatgtaagctgaaa							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	20886840	20886842	ATA	-	DEL	C2orf43	ENST00000237822	human	ensembl	69_37n	-1	known	in_frame_del	c.801_799	p.Y267in_frame_del	0.989:1.000:1.000	pfam_DUF2305	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961	262	0	0	96	57	37.25	-	-	-	-	20886842	ATA	-	20886840	7	5	760	1	0	1	0	1	0	0	0	0	2187	224	8	0	180	0	C2orf43	2	20886840	In_Frame_Del	DEL	ATA	TCGA-E2-A14W-01A-11D-A12B-09		20886840	222312533	8	66352										
HEATR5B	0	genome.wustl.edu	37	chr2	37217922	37217922	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgttagcatgcttacttcatCaggtgtaggtacagagtctt	10	7	3	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	37217922	37217922	C	G	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	missense	c.5566	p.D1856H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	365	0	0	198	84	29.68	-	-	-	G	37217922	C	G	37217922	3	3	760	1	0	0	0	0	1	0	0	0	7083	826	29	2	661	2	HEATR5B	2	37217922	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	16331082	37217922	205981451	9	66353										
SOS1	0	genome.wustl.edu	37	chr2	39249723	39249723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	attcttacctgcgtacatatGgtacgtaagcctctctataa	6	10	2	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	39249723	39249723	G	A	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	missense	c.1846	p.H616Y	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	158	0	0	70	37	34.58	-	-	-	A	39249723	G	A	39249723	3	1	760	1	0	0	0	0	1	0	0	0	15025	1348	47	4	2211	4	SOS1	2	39249723	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	2031801	39249723	203949650	10	66354										
B3GNT2	0	genome.wustl.edu	37	chr2	62450052	62450052	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtttctcaggtgggtaagtActtcctgcccagacactgag	11	10	1	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	62450052	62450052	A	T	SNP	B3GNT2	ENST00000301998	human	ensembl	69_37n	1	known	missense	c.697	p.T233S	0.986	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT2	HGNC	ENSG00000170340	245	1	0.39	132	62	31.63	-	-	-	T	62450052	A	T	62450052	3	4	760	1	0	0	0	0	1	0	0	0	1261	391	14	5	699	5	B3GNT2	2	62450052	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	23200329	62450052	180749321	11	66355										
SULT1C4	0	genome.wustl.edu	37	chr2	108998294	108998294	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	aaaagtaaacgggcaccgacTcatcaacgatttcctttcct	6	12	2	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	108998294	108998294	T	C	SNP	SULT1C4	ENST00000272452	human	ensembl	69_37n	1	known	silent	c.246	p.T82	0.010	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1C4	HGNC	ENSG00000198075	279	0	0	137	50	26.74	-	-	-	C	108998294	T	C	108998294	2	2	760	1	0	0	0	0	0	0	0	1	15470	1538	54	5		5	SULT1C4	2	108998294	Silent	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09	46548242	108998294	134201079	12	66356										
KCNH7	0	genome.wustl.edu	37	chr2	163236470	163236470	+	Frame_Shift_Del	DEL	A	A	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gctcgctgaagtgcagatggActggagtcttcaggctgggg							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	163236470	163236470	A	-	DEL	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	frame_shift_del	c.3024	p.P1009fs	0.985	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	346	0	0	160	76	31.28	-	-	-	-	163236470	A	-	163236470	7	5	760	1	0	1	0	1	0	0	0	0	8091	272	10	0	578	0	KCNH7	2	163236470	Frame_Shift_Del	DEL	A	TCGA-E2-A14W-01A-11D-A12B-09	54238176	163236470	79962903	13	66357										
TTN	0	genome.wustl.edu	37	chr2	179613021	179613021	+	Frame_Shift_Del	DEL	T	T	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tcctgtacatgtcggacttcTttttctaaagaaatggaatt							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	179613021	179613021	T	-	DEL	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	frame_shift_del	c.14106	p.E4703fs	0.006	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	219	0	0	96	51	34.23	-	-	-	-	179613021	T	-	179613021	7	5	760	1	0	1	0	1	0	0	0	0	16832	1606	56	0	96191	0	TTN	2	179613021	Frame_Shift_Del	DEL	T	TCGA-E2-A14W-01A-11D-A12B-09	16376551	179613021	63586352	14	66358										
DNAH7	0	genome.wustl.edu	37	chr2	196749335	196749335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gacaaattgataatcataaaTtgttcctttttcaggaaatg	6	5	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	196749335	196749335	T	C	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	missense	c.5737	p.I1913V	0.968	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	286	1	0.35	111	86	43.65	-	-	-	C	196749335	T	C	196749335	3	2	760	1	0	0	0	0	1	0	0	0	4641	1493	52	5	6461	5	DNAH7	2	196749335	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09	17136314	196749335	46450038	15	66359										
SUMO1	0	genome.wustl.edu	37	chr2	203084812	203084812	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ttcttatcccccaagtcctcAgttgaaggttttgcctcctg	7	13	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	203084812	203084812	A	C	SNP	SUMO1	ENST00000409627	human	ensembl	69_37n	-1	known	nonstop	c.220	p.*74G	0.998	NULL	NULL	-	no_errors	SUMO1	HGNC	ENSG00000116030	511	0	0	218	101	31.56	-	-	-	C	203084812	A	C	203084812	4	2	760	1	0	0	0	0	0	0	0	0	15478	175	7	5	291	5	SUMO1	2	203084812	Nonstop_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	6335477	203084812	40114561	16	66360										
DYTN	0	genome.wustl.edu	37	chr2	207530636	207530636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtagcttggtccatagactAtcctggttggttttgagttt	11	6	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	207530636	207530636	A	C	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	missense	c.1098	p.D366E	0.000	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	889	1	0.11	466	218	31.87	-	-	-	C	207530636	A	C	207530636	3	2	760	1	0	0	0	0	1	0	0	0	4896	446	16	5	650	5	DYTN	2	207530636	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	4445824	207530636	35668737	17	66361										
MAP2	0	genome.wustl.edu	37	chr2	210559282	210559282	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ttcctagccaaagatttttaCaaaaatggtactgtcatggc	7	8	1	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	210559282	210559282	C	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	silent	c.2388	p.Y796	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	210	0	0	123	26	17.45	-	-	-	T	210559282	C	T	210559282	2	4	760	1	0	0	0	0	0	0	0	1	9306	489	17	4		4	MAP2	2	210559282	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	3028646	210559282	32640091	18	66362										
TNS1	0	genome.wustl.edu	37	chr2	218686502	218686502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggctgctggtggagagggggCtgggggagacaaaggagcca	22	6	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	2	218686502	218686502	C	T	SNP	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	missense	c.3221	p.S1074N	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	38	0	0	18	6	25	-	-	-	T	218686502	C	T	218686502	3	4	760	1	0	0	0	0	1	0	0	0	16438	797	28	4	2030	4	TNS1	2	218686502	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	8127220	218686502	24512871	19	66363										
SATB1	0	genome.wustl.edu	37	chr3	18458465	18458465	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tttcgatcagctggttgaaaAgcatatcctttctcaccagc	7	11	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	18458465	18458465	A	T	SNP	SATB1	ENST00000338745	human	ensembl	69_37n	-1	known	missense	c.317	p.L106H	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	288	0	0	161	106	39.7	-	-	-	T	18458465	A	T	18458465	3	4	760	1	0	0	0	0	1	0	0	0	13940	72	3	5	2010	5	SATB1	3	18458465	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09		18458465	179563965	20	66364										
CRYBG3	0	genome.wustl.edu	37	chr3	97614826	97614826	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggttgcctatgaaaaagaacAttttaaaggccagcagtttc	9	7	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	97614826	97614826	A	G	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1754	p.H585R	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	639	0	0	280	126	30.96	-	-	-	G	97614826	A	G	97614826	3	3	760	1	0	0	0	0	1	0	0	0	3943	217	8	5	1788	5	CRYBG3	3	97614826	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	79156361	97614826	100407604	21	66365										
TMEM39A	0	genome.wustl.edu	37	chr3	119153657	119153657	+	Frame_Shift_Del	DEL	C	C	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggcactgccacgttgtaaggCcccatggctctatataaaca							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	119153657	119153657	C	-	DEL	TMEM39A	ENST00000319172	human	ensembl	69_37n	-1	known	frame_shift_del	c.1185	p.P396fs	0.826	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142	275	0	0	179	50	21.74	-	-	-	-	119153657	C	-	119153657	7	5	760	1	0	1	0	1	0	0	0	0	16256	726	26	0	289	0	TMEM39A	3	119153657	Frame_Shift_Del	DEL	C	TCGA-E2-A14W-01A-11D-A12B-09	21538831	119153657	78868773	22	66366										
PPP2R3A	0	genome.wustl.edu	37	chr3	135721060	135721060	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gacatcttattgaaatgctcCgaggatttaaaaaaatgcac	7	7	1	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	135721060	135721060	C	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	silent	c.720	p.S240	0.976	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	126	0	0	44	34	43.59	-	-	-	A	135721060	C	A	135721060	2	1	760	1	0	0	0	0	0	0	0	1	12465	639	23	3		3	PPP2R3A	3	135721060	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	16567403	135721060	62301370	23	66367										
PPP2R3A	0	genome.wustl.edu	37	chr3	135745705	135745705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	accagaaaagaaacctggaaCaccactcccacctccagcca	5	17	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	135745705	135745705	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	missense	c.2027	p.T676I	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	143	0	0	79	42	34.71	-	-	-	T	135745705	C	T	135745705	3	4	760	1	0	0	0	0	1	0	0	0	12465	478	17	4	2169	4	PPP2R3A	3	135745705	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	24645	135745705	62276725	24	66368										
WDR49	0	genome.wustl.edu	37	chr3	167320043	167320043	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gggattccaaaggcaaacttTattgttaatgccagcagttg	10	7	0	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	3	167320043	167320043	T	G	SNP	WDR49	ENST00000308378	human	ensembl	69_37n	-1	known	missense	c.124	p.K42Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776	166	0	0	100	29	22.48	-	-	-	G	167320043	T	G	167320043	3	3	760	1	0	0	0	0	1	0	0	0	17399	1763	61	5	2021	5	WDR49	3	167320043	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09	31574338	167320043	30702387	25	66369										
LETM1	0	genome.wustl.edu	37	chr4	1836571	1836571	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gactcagacgtatcacagcaCcttctggaaaaacacagaga	8	11	3	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	4	1836571	1836571	C	A	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	splice_site	c.876+1	e5+1	1.000	-	-	-	no_errors	LETM1	HGNC	ENSG00000168924	124	0	0	85	44	33.85	-	-	-	A	1836571	C	A	1836571	5	1	760	1	0	0	0	0	0	0	1	0	8788	521	18	4	1382	4	LETM1	4	1836571	Splice_Site	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		1836571	189317705	26	66370										
ENAM	0	genome.wustl.edu	37	chr4	71510070	71510070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tatgccctttcctgaagccaGttcccttcaatcaaagaata	5	12	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	4	71510070	71510070	G	C	SNP	ENAM	ENST00000396073	human	ensembl	69_37n	1	known	missense	c.2927	p.S976T	0.538	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	245	0	0	121	76	38.58	-	-	-	C	71510070	G	C	71510070	3	2	760	1	0	0	0	0	1	0	0	0	5149	1029	36	4	2957	4	ENAM	4	71510070	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	69673499	71510070	119644206	27	66371										
CENPE	0	genome.wustl.edu	37	chr4	104066383	104066383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tatactttgtagtgctgaatCcttggctttgcgatgctcct	9	9	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	4	104066383	104066383	C	T	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.4681	p.D1561N	0.003	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	768	0	0	376	107	22.15	-	-	-	T	104066383	C	T	104066383	3	4	760	1	0	0	0	0	1	0	0	0	3259	855	30	2	3496	2	CENPE	4	104066383	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	32556313	104066383	87087893	28	66372										
GHR	0	genome.wustl.edu	37	chr5	42718684	42718684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	agccagatgaaaagactgagGaatcagacacagacagactt	10	8	1	7			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	5	42718684	42718684	G	A	SNP	GHR	ENST00000230882	human	ensembl	69_37n	1	known	missense	c.1075	p.E359K	0.998	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964	235	2	0.84	115	61	34.66	-	-	-	A	42718684	G	A	42718684	3	1	760	1	0	0	0	0	1	0	0	0	6423	1175	41	2	1109	2	GHR	5	42718684	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09		42718684	138196576	29	66373										
ZFYVE16	0	genome.wustl.edu	37	chr5	79743961	79743961	+	Frame_Shift_Del	DEL	G	G	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	atttctcaggttccatcagtGgaaaaattgtctatgaacac							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	5	79743961	79743961	G	-	DEL	ZFYVE16	ENST00000338008	human	ensembl	69_37n	1	known	frame_shift_del	c.2841	p.E948fs	0.792	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319	340	0	0	166	87	33.85	-	-	-	-	79743961	G	-	79743961	7	5	760	1	0	1	0	1	0	0	0	0	17760	1335	47	0	2863	0	ZFYVE16	5	79743961	Frame_Shift_Del	DEL	G	TCGA-E2-A14W-01A-11D-A12B-09	37025277	79743961	101171299	30	66374										
CEP120	0	genome.wustl.edu	37	chr5	122729131	122729131	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtaacatcatttcccagtaAagagtagtaaaagaaaaact	6	6	1	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	5	122729131	122729131	A	C	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.673	p.L225V	0.999	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	458	0	0	234	93	28.44	-	-	-	C	122729131	A	C	122729131	3	2	760	1	0	0	0	0	1	0	0	0	3275	11	1	5	2347	5	CEP120	5	122729131	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	42985170	122729131	58186129	31	66375										
ANXA6	0	genome.wustl.edu	37	chr5	150483215	150483215	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tcaatctcactgcgggatacCatgatcctggtcagagtctt	9	11	4	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	5	150483215	150483215	C	G	SNP	ANXA6	ENST00000354546	human	ensembl	69_37n	-1	known	missense	c.1878	p.M626I	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043	212	0	0	126	61	32.62	-	-	-	G	150483215	C	G	150483215	3	3	760	1	0	0	0	0	1	0	0	0	721	594	21	4	151	4	ANXA6	5	150483215	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	27754084	150483215	30432045	32	66376										
OR2B6	0	genome.wustl.edu	37	chr6	27925573	27925573	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtgaagtccctgcactgctCaagttatcttgtgttgagac	10	9	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	6	27925573	27925573	C	G	SNP	OR2B6	ENST00000244623	human	ensembl	69_37n	1	known	silent	c.555	p.L185	0.936	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B6	HGNC	ENSG00000124657	403	0	0	177	98	35.64	-	-	-	G	27925573	C	G	27925573	2	3	760	1	0	0	0	0	0	0	0	1	11064	813	29	2		2	OR2B6	6	27925573	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		27925573	143189494	33	66377										
CPNE5	0	genome.wustl.edu	37	chr6	36710076	36710076	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtgcaggggggacgcagggGgcgtgcgggctggggactgc	24	8	0	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	6	36710076	36710076	G	C	SNP	CPNE5	ENST00000244751	human	ensembl	69_37n	-1	known	missense	c.1751	p.P584R	0.958	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772	32	0	0	22	23	51.11	-	-	-	C	36710076	G	C	36710076	3	2	760	1	0	0	0	0	1	0	0	0	3845	1232	43	4	34	4	CPNE5	6	36710076	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	8784503	36710076	134404991	34	66378										
ANKRD6	0	genome.wustl.edu	37	chr6	90338952	90338952	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	accatctacttgtgagtcctCtacaggtaacccacacacag	6	14	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	6	90338952	90338952	C	G	SNP	ANKRD6	ENST00000339746	human	ensembl	69_37n	1	known	missense	c.1607	p.S536C	0.693	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299	247	0	0	126	86	40.57	-	-	-	G	90338952	C	G	90338952	3	3	760	1	0	0	0	0	1	0	0	0	684	928	32	2		2	ANKRD6	6	90338952	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	53628876	90338952	80776115	35	66379										
BACH2	0	genome.wustl.edu	37	chr6	90660211	90660211	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	aactcacagagagggaggctGcagggtgagcccccgctccc	14	14	1	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	6	90660211	90660211	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	silent	c.1614	p.C538	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	135	0	0	82	37	31.09	-	-	-	A	90660211	G	A	90660211	2	1	760	1	0	0	0	0	0	0	0	1	1288	1311	46	4		4	BACH2	6	90660211	Silent	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	321259	90660211	80454856	36	66380										
MAS1	0	genome.wustl.edu	37	chr6	160328951	160328951	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	attgtaatacggtcacagttGagactgtcgtctaagaactg	10	7	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	6	160328951	160328951	G	C	SNP	MAS1	ENST00000252660	human	ensembl	69_37n	1	known	missense	c.964	p.E322Q	1.000	prints_Mas_TM	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mas_TM,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368	64	0	0	37	37	50	-	-	-	C	160328951	G	C	160328951	3	2	760	1	0	0	0	0	1	0	0	0	9391	1291	45	2	966	2	MAS1	6	160328951	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	69668740	160328951	10786116	37	66381										
DPY19L1	0	genome.wustl.edu	37	chr7	35057529	35057529	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	agccatctccctttccaatgTtgagaggtgagaaaaatgac	9	9	1	3			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	7	35057529	35057529	T	A	SNP	DPY19L1	ENST00000310974	human	ensembl	69_37n	-1	known	missense	c.157	p.T53S	0.909	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852	400	0	0	253	83	24.7	-	-	-	A	35057529	T	A	35057529	3	1	760	1	0	0	0	0	1	0	0	0	4775	1725	60	5	1950	5	DPY19L1	7	35057529	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09		35057529	124081134	38	66382										
RELN	0	genome.wustl.edu	37	chr7	103183270	103183270	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccactagaaaggattccacaCtttcgagatggtttcccacc	7	13	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	7	103183270	103183270	C	G	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.6579	p.K2193N	0.987	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	263	0	0	131	59	31.05	-	-	-	G	103183270	C	G	103183270	3	3	760	1	0	0	0	0	1	0	0	0	13303	564	20	4	3895	4	RELN	7	103183270	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	68125741	103183270	55955393	39	66383										
PDGFRL	0	genome.wustl.edu	37	chr8	17486008	17486008	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ctttgcagagaaaggagaacTctttgtaccttctcccagct	8	11	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	8	17486008	17486008	T	C	SNP	PDGFRL	ENST00000251630	human	ensembl	69_37n	1	known	missense	c.518	p.L173P	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PDGFRL	HGNC	ENSG00000104213	192	0	0	37	55	59.78	-	-	-	C	17486008	T	C	17486008	3	2	760	1	0	0	0	0	1	0	0	0	11736	1551	54	5	532	5	PDGFRL	8	17486008	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09		17486008	128878014	40	66384										
PREX2	0	genome.wustl.edu	37	chr8	69002851	69002851	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gctggtcttcaccctggacaGtgcattatcaaggtgaatgg	12	9	3	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	8	69002851	69002851	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	silent	c.2151	p.Q717	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	182	0	0	186	37	16.59	-	-	-	A	69002851	G	A	69002851	2	1	760	1	0	0	0	0	0	0	0	1	12558	1020	36	4		4	PREX2	8	69002851	Silent	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	51516843	69002851	77361171	41	66385										
GRID1	0	genome.wustl.edu	37	chr10	87615835	87615835	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	caccattccatggcttagtgGatttccgtatgcagttgagg	11	9	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	10	87615835	87615835	G	C	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.1064	p.S355C	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	270	0	0	164	84	33.87	-	-	-	C	87615835	G	C	87615835	3	2	760	1	0	0	0	0	1	0	0	0	6822	1174	41	2	2005	2	GRID1	10	87615835	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09		87615835	47918912	42	66386										
PLCE1	0	genome.wustl.edu	37	chr10	96058171	96058171	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ttcgacagacctgggaggaaTcttcttcccctctcaaccca	7	15	3	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	10	96058171	96058171	T	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.5203	p.S1735T	0.000	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	200	0	0	61	61	50	-	-	-	A	96058171	T	A	96058171	3	1	760	1	0	0	0	0	1	0	0	0	12108	1435	50	5	5579	5	PLCE1	10	96058171	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09	8442336	96058171	39476576	43	66387										
FGFR2	0	genome.wustl.edu	37	chr10	123263332	123263332	+	Missense_Mutation	SNP	C	C	A													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tggaaactcccattttgggtCctctggaagttcatactcgg							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	10	123263332	123263332	C	A	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1414	p.D472Y	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	264	0	0	60	59	49.58	-	-	-	A	123263332	C	A	123263332	3	1	760	1	0	0	0	0	1	0	0	0	5912	855	30	2	1194	2	FGFR2	10	123263332	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	27205161	123263332	12271415	44	66388	480	2								
FGFR2	0	genome.wustl.edu	37	chr10	123263333	123263333	+	Missense_Mutation	SNP	C	C	A													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ggaaactcccattttgggtcCtctggaagttcatactcgga							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	10	123263333	123263333	C	A	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1413	p.E471D	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	264	0	0	59	60	50.42	-	-	-	A	123263333	C	A	123263333	3	1	760	1	0	0	0	0	1	0	0	0	5912	680	24	4	1195	4	FGFR2	10	123263333	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	1	123263333	12271414	45	66389	480	2								
ABCC8	0	genome.wustl.edu	37	chr11	17482153	17482153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	aagtgctgctgaggaccaggCgcctcccgaaggcatggctg	15	12	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	11	17482153	17482153	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.893	p.R298H	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	40	0	0	26	13	33.33	-	-	-	T	17482153	C	T	17482153	3	4	760	1	0	0	0	0	1	0	0	0	58	768	27	1	3988	1	ABCC8	11	17482153	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		17482153	117524363	46	66390										
IGSF22	0	genome.wustl.edu	37	chr11	18727602	18727602	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gtgcagtcctggccgcggagCaccgtgtgtggcttgagggg	19	10	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	11	18727602	18727602	C	T	SNP	IGSF22	ENST00000513874	human	ensembl	69_37n	-1	known	silent	c.3672	p.V1224	0.308	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF22	HGNC	ENSG00000179057	74	0	0	53	27	33.33	-	-	-	T	18727602	C	T	18727602	2	4	760	1	0	0	0	0	0	0	0	1	7654	697	25	4		4	IGSF22	11	18727602	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	1245449	18727602	116278914	47	66391										
FADS2	0	genome.wustl.edu	37	chr11	61624993	61624993	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	atgaccatgatcgtccataaGaactgggtggtgagttgggg	15	6	0	4			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	11	61624993	61624993	G	C	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.873	p.K291N	0.005	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	291	0	0	155	76	32.9	-	-	-	C	61624993	G	C	61624993	3	2	760	1	0	0	0	0	1	0	0	0	5406	933	33	2	899	2	FADS2	11	61624993	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	42897391	61624993	73381523	48	66392										
CAPN1	0	genome.wustl.edu	37	chr11	64972292	64972292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tcgccgcgagcgccgcttcgGccgcgacatggagactattg	14	14	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	11	64972292	64972292	G	A	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.1304	p.G435D	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	14	0	0	12	5	29.41	-	-	-	A	64972292	G	A	64972292	3	1	760	1	0	0	0	0	1	0	0	0	2647	1203	42	4	1342	4	CAPN1	11	64972292	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	3347299	64972292	70034224	49	66393										
NAV3	0	genome.wustl.edu	37	chr12	78542637	78542637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ttcagcaaatccataaactgCggagagagctggttgcatca	10	9	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	12	78542637	78542637	C	T	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.4723	p.R1575W	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	414	1	0.24	285	266	48.19	-	-	-	T	78542637	C	T	78542637	3	4	760	1	0	0	0	0	1	0	0	0	10257	759	27	1	4809	1	NAV3	12	78542637	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		78542637	55309258	50	66394										
UTP20	0	genome.wustl.edu	37	chr12	101705565	101705565	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgagcatctagaaaaagcagCtacgcatgctggtatgtaaa	10	7	1	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	12	101705565	101705565	C	A	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.2300	p.A767D	0.992	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	294	0	0	143	75	34.4	-	-	-	A	101705565	C	A	101705565	3	1	760	1	0	0	0	0	1	0	0	0	17196	797	28	4	2378	4	UTP20	12	101705565	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	23162928	101705565	32146330	51	66395										
SLC24A6	0	genome.wustl.edu	37	chr12	113753164	113753164	+	Frame_Shift_Del	DEL	C	C	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccccgactgcagggtcaggaCcacaaccagggggctgataa							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	12	113753164	113753164	C	-	DEL	SLC24A6	ENST00000202831	human	ensembl	69_37n	-1	known	frame_shift_del	c.1111	p.V371fs	1.000	NULL	pfam_NaCa_Exmemb	-	no_errors	SLC24A6	HGNC	ENSG00000089060	111	0	0	61	31	33.7	-	-	-	-	113753164	C	-	113753164	7	5	760	1	0	1	0	1	0	0	0	0	14559	507	18	0	667	0	SLC24A6	12	113753164	Frame_Shift_Del	DEL	C	TCGA-E2-A14W-01A-11D-A12B-09	12047599	113753164	20098731	52	66396										
SORD	0	genome.wustl.edu	37	chr15	45335550	45335550	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	attttattgtgaaaaagcccAtggtgctgggacatgaagct	11	6	0	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	15	45335550	45335550	A	G	SNP	SORD	ENST00000267814	human	ensembl	69_37n	1	known	missense	c.196	p.M66V	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	SORD	HGNC	ENSG00000140263	65	0	0	36	13	26.53	-	-	-	G	45335550	A	G	45335550	3	3	760	1	0	0	0	0	1	0	0	0	15022	217	8	5	206	5	SORD	15	45335550	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09		45335550	57195842	53	66397										
NEO1	0	genome.wustl.edu	37	chr15	73409162	73409162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccactgttgagagtcttggaActattatcagtagaacagcg	10	8	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	15	73409162	73409162	A	C	SNP	NEO1	ENST00000261908	human	ensembl	69_37n	1	known	missense	c.412	p.T138P	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NEO1	HGNC	ENSG00000067141	290	0	0	224	81	26.56	-	-	-	C	73409162	A	C	73409162	3	2	760	1	0	0	0	0	1	0	0	0	10408	43	2	5	418	5	NEO1	15	73409162	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09	28073612	73409162	29122230	54	66398										
GOLGA6A	0	genome.wustl.edu	37	chr15	74367318	74367318	+	Frame_Shift_Del	DEL	G	G	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccaccacagaggtcactgctGggggcgccagggatgggggc							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	15	74367318	74367318	G	-	DEL	GOLGA6A	ENST00000290438	human	ensembl	69_37n	-1	known	frame_shift_del	c.872	p.P291fs	0.917	NULL	NULL	-	no_errors	GOLGA6A	HGNC	ENSG00000159289	227	0	0	172	95	35.32	-	-	-	-	74367318	G	-	74367318	7	5	760	1	0	1	0	1	0	0	0	0	6609	1348	47	0	1241	0	GOLGA6A	15	74367318	Frame_Shift_Del	DEL	G	TCGA-E2-A14W-01A-11D-A12B-09	958156	74367318	28164074	55	66399										
KIAA1199	0	genome.wustl.edu	37	chr15	81216988	81216988	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	atgatcatagacaacggagtCaaaaccaccgaggcctctgc	9	12	3	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	15	81216988	81216988	C	G	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	silent	c.2229	p.V743	0.999	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	165	0	0	181	59	24.58	-	-	-	G	81216988	C	G	81216988	2	3	760	1	0	0	0	0	0	0	0	1	8265	813	29	2		2	KIAA1199	15	81216988	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	6849670	81216988	21314404	56	66400										
TNRC6A	0	genome.wustl.edu	37	chr16	24817933	24817933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	cagcagcaaatgatgcaacaAtctcgtcaacttgatccaaa	6	11	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	16	24817933	24817933	A	G	SNP	TNRC6A	ENST00000568750	human	ensembl	69_37n	1	novel	missense	c.467	p.N156S	0.961	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	TNRC6A	HGNC	ENSG00000090905	395	0	0	186	212	53.27	-	-	-	G	24817933	A	G	24817933	3	3	760	1	0	0	0	0	1	0	0	0	16435	98	4	5	4434	5	TNRC6A	16	24817933	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09		24817933	65536820	57	66401										
BCMO1	0	genome.wustl.edu	37	chr16	81303899	81303899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtttgacgtcattgcctacGaggacaacagcctctaccag	9	12	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	16	81303899	81303899	G	A	SNP	BCMO1	ENST00000258168	human	ensembl	69_37n	1	known	missense	c.979	p.E327K	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	163	0	0	49	46	47.92	-	-	-	A	81303899	G	A	81303899	3	1	760	1	0	0	0	0	1	0	0	0	1388	1059	37	1	1005	1	BCMO1	16	81303899	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	56485966	81303899	9050854	58	66402										
MGAT5B	0	genome.wustl.edu	37	chr17	74934211	74934211	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	agcctgagtttcagcagctgCtgcgcaaggccaaagtgagc	13	11	1	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	17	74934211	74934211	C	A	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.1597	p.L533M	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	62	0	0	125	24	16.11	-	-	-	A	74934211	C	A	74934211	3	1	760	1	0	0	0	0	1	0	0	0	9620	796	28	4	1711	4	MGAT5B	17	74934211	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		74934211	6260999	59	66403										
FHOD3	0	genome.wustl.edu	37	chr18	34289076	34289076	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	agcaagtgccggggatcctgAacccgaatcagaggcagaac	13	11	1	3			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	18	34289076	34289076	A	G	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.1730	p.E577G	0.019	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	79	0	0	63	33	34.38	-	-	-	G	34289076	A	G	34289076	3	3	760	1	0	0	0	0	1	0	0	0	5929	246	9	5	1788	5	FHOD3	18	34289076	Missense_Mutation	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09		34289076	43788172	60	66404										
OR7D4	0	genome.wustl.edu	37	chr19	9324875	9324876	+	Frame_Shift_Del	DEL	CC	CC	-													0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgagagtaggagaagaggatCccagctacaggaaacacacc							TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	19	9324875	9324876	CC	-	DEL	OR7D4	ENST00000308682	human	ensembl	69_37n	-1	known	frame_shift_del	c.639_638	p.G213fs	0.726:0.720	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	101	0	0	62	27	30	-	-	-	-	9324876	CC	-	9324875	7	5	760	1	0	1	0	1	0	0	0	0	11293	842	30	0	303	0	OR7D4	19	9324875	Frame_Shift_Del	DEL	CC	TCGA-E2-A14W-01A-11D-A12B-09		9324875	49804108	61	66405										
RYR1	0	genome.wustl.edu	37	chr19	38990591	38990591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	aaaaccgggtgcacctgggaCacgccatcatgtccttctat	9	13	2	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	19	38990591	38990591	C	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.7258	p.H2420N	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	135	1	0.74	92	55	37.41	-	-	-	A	38990591	C	A	38990591	3	1	760	1	0	0	0	0	1	0	0	0	13854	478	17	4	7436	4	RYR1	19	38990591	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	29665716	38990591	20138392	62	66406										
CPT1C	0	genome.wustl.edu	37	chr19	50195607	50195607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgtgctgcaggagatctaccTctctggcctgcgctcctgga	12	13	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	19	50195607	50195607	T	A	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.98	p.L33H	0.999	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	93	0	0	60	29	32.58	-	-	-	A	50195607	T	A	50195607	3	1	760	1	0	0	0	0	1	0	0	0	3863	1551	54	5	100	5	CPT1C	19	50195607	Missense_Mutation	SNP	T	TCGA-E2-A14W-01A-11D-A12B-09	11205016	50195607	8933376	63	66407										
LRRC4B	0	genome.wustl.edu	37	chr19	51022417	51022417	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ctcgcccaggtccaggcgccGcagcgagggcacgcggttga	16	15	0	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	19	51022417	51022417	G	T	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.553	p.R185	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	64	0	0	62	27	30.34	-	-	-	T	51022417	G	T	51022417	2	4	760	1	0	0	0	0	0	0	0	1	9073	1086	38	3		3	LRRC4B	19	51022417	Silent	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	826810	51022417	8106566	64	66408										
NLRP12	0	genome.wustl.edu	37	chr19	54307284	54307284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccaaatcctccagtgcatttCctgtcaggtccaactcaacc	5	16	2	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	19	54307284	54307284	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	missense	c.2510	p.G837E	0.001	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	206	0	0	124	71	36.41	-	-	-	T	54307284	C	T	54307284	3	4	760	1	0	0	0	0	1	0	0	0	10546	855	30	2	698	2	NLRP12	19	54307284	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	3284867	54307284	4821699	65	66409										
NCAM2	0	genome.wustl.edu	37	chr21	22664443	22664443	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gatcggttcgctatgttagcAaacaataacctgcagattct	8	9	1	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	21	22664443	22664443	A	T	SNP	NCAM2	ENST00000400546	human	ensembl	69_37n	1	known	silent	c.501	p.A167	0.977	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	556	1	0.18	307	157	33.84	-	-	-	T	22664443	A	T	22664443	2	4	760	1	0	0	0	0	0	0	0	1	10275	117	5	5		5	NCAM2	21	22664443	Silent	SNP	A	TCGA-E2-A14W-01A-11D-A12B-09		22664443	25465452	66	66410										
PCNT	0	genome.wustl.edu	37	chr21	47783719	47783719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gcctgcagcagctggaacagGacctcacttcagacgacgcc	11	15	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	21	47783719	47783719	G	A	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.2479	p.D827N	0.003	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	24	0	0	12	6	33.33	-	-	-	A	47783719	G	A	47783719	3	1	760	1	0	0	0	0	1	0	0	0	11663	1174	41	2	2533	2	PCNT	21	47783719	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	25119276	47783719	346176	67	66411										
MYO18B	0	genome.wustl.edu	37	chr22	26299726	26299726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ttgaaggagaggctctggaaGttggaatccagcgcccttga	14	8	1	3			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	22	26299726	26299726	G	T	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.5076	p.K1692N	0.903	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	162	0	0	144	22	13.25	-	-	-	T	26299726	G	T	26299726	3	4	760	1	0	0	0	0	1	0	0	0	10138	1020	36	4	5194	4	MYO18B	22	26299726	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09		26299726	25004840	68	66412										
KREMEN1	0	genome.wustl.edu	37	chr22	29534662	29534662	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ccgctgtcaaccagacggtgGccgaggtgatcacggagcag	15	12	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	22	29534662	29534662	G	T	SNP	KREMEN1	ENST00000327813	human	ensembl	69_37n	1	known	missense	c.1015	p.A339S	0.686	pirsf_Kremen	pirsf_Kremen,pfam_Kringle,pfam_WSC_carb-bd,pfam_CUB,superfamily_Kringle-like,superfamily_CUB,smart_Kringle,smart_WSC_carb-bd_subgr,smart_CUB,pfscan_CUB,pfscan_Kringle,pfscan_WSC_carb-bd	-	no_errors	KREMEN1	HGNC	ENSG00000183762	183	0	0	59	87	59.59	-	-	-	T	29534662	G	T	29534662	3	4	760	1	0	0	0	0	1	0	0	0	8495	1203	42	4	1041	4	KREMEN1	22	29534662	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	3234936	29534662	21769904	69	66413										
TYMP	0	genome.wustl.edu	37	chr22	50967953	50967953	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	gcgccctgcgcgctcccattCaccacagcggccacgaagcc	10	20	1	0			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	22	50967953	50967953	C	T	SNP	TYMP	ENST00000252029	human	ensembl	69_37n	-1	known	silent	c.186	p.V62	0.426	pfam_Glycosyl_Trfase_fam3_N_dom,superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708	33	0	0	12	11	47.83	-	-	-	T	50967953	C	T	50967953	2	4	760	1	0	0	0	0	0	0	0	1	16908	813	29	2		2	TYMP	22	50967953	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	21433291	50967953	336613	70	66414										
VCX3A	0	genome.wustl.edu	37	chrX	6451836	6451836	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	ctcctgactcagtggttcctCcacctggctctcctgactca	7	17	3	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	6451836	6451836	C	G	SNP	VCX3A	ENST00000381089	human	ensembl	69_37n	-1	known	missense	c.511	p.E171Q	0.129	NULL	NULL	-	no_errors	VCX3A	HGNC	ENSG00000169059	304	0	0	171	118	40.83	-	-	-	G	6451836	C	G	6451836	3	3	760	1	0	0	0	0	1	0	0	0	17241	864	30	2	53	2	VCX3A	23	6451836	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09		6451836	148818724	71	66415										
VCX	0	genome.wustl.edu	37	chrX	7812007	7812007	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgagtcaggagagccaggtgGaggaaccaccgagtcaggag	17	8	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	7812007	7812007	G	C	SNP	VCX	ENST00000381059	human	ensembl	69_37n	1	known	missense	c.571	p.E191Q	0.429	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	202	0	0	137	65	32.18	-	-	-	C	7812007	G	C	7812007	3	2	760	1	0	0	0	0	1	0	0	0	17239	1175	41	2	577	2	VCX	23	7812007	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	1360171	7812007	147458553	72	66416										
DMD	0	genome.wustl.edu	37	chrX	32328199	32328199	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	tgaaagtgctttggttttacCttcagagactcctcttgctt	8	9	2	2			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	32328199	32328199	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.6117	p.K2039	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	110	1	0.9	38	57	60	-	-	-	T	32328199	C	T	32328199	2	4	760	1	0	0	0	0	0	0	0	1	4616	695	24	4		4	DMD	23	32328199	Silent	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	24516192	32328199	122942361	73	66417										
ELK1	0	genome.wustl.edu	37	chrX	47498688	47498688	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	accctgcgacctcagggtagGacacaaacttgtagacgaac	10	12	1	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	47498688	47498688	G	C	SNP	ELK1	ENST00000247161	human	ensembl	69_37n	-1	known	missense	c.260	p.S87C	1.000	pfam_Ets,smart_Ets	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELK1	HGNC	ENSG00000126767	30	0	0	39	5	11.36	-	-	-	C	47498688	G	C	47498688	3	2	760	1	0	0	0	0	1	0	0	0	5096	1174	41	2	1042	2	ELK1	23	47498688	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	15170489	47498688	107771872	74	66418										
PAGE1	0	genome.wustl.edu	37	chrX	49454099	49454099	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	accatctccgcgctcacaccCagtcttcgggtgaacctgtt	8	16	3	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	49454099	49454099	C	G	SNP	PAGE1	ENST00000376150	human	ensembl	69_37n	-1	known	missense	c.340	p.G114R	0.006	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985	64	0	0	17	20	54.05	-	-	-	G	49454099	C	G	49454099	3	3	760	1	0	0	0	0	1	0	0	0	11462	594	21	4	108	4	PAGE1	23	49454099	Missense_Mutation	SNP	C	TCGA-E2-A14W-01A-11D-A12B-09	1955411	49454099	105816461	75	66419										
RGAG4	0	genome.wustl.edu	37	chrX	71351178	71351178	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0933333333333333	7	0.538839456561903	1.40392851868262	2.4735883424408	0.39056658038539	0.0291375291375292	0.252181446871713	0	acttcgatctcactgagcgcGaactccaagttctcctccgc	7	16	2	1			TCGA-E2-A14W-01A-11D-A12B-09	TCGA-E2-A14W-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf	7dfbdd33-5e89-45ef-a636-fe72cc25f3b9	X	71351178	71351178	G	C	SNP	RGAG4	ENST00000479991	human	ensembl	69_37n	-1	known	missense	c.213	p.F71L	0.999	NULL	pfam_Retrotrans_gag	-	no_errors	RGAG4	HGNC	ENSG00000242732	16	0	0	9	14	60.87	-	-	-	C	71351178	G	C	71351178	3	2	760	1	0	0	0	0	1	0	0	0	13358	1049	37	3	1500	3	RGAG4	23	71351178	Missense_Mutation	SNP	G	TCGA-E2-A14W-01A-11D-A12B-09	21897079	71351178	83919382	76	66420										
PXDN	0	genome.wustl.edu	37	chr2	1670056	1670056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	gcagagcacgcatactctccGctgtccccctgtacgacgtt	9	16	1	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	2	1670056	1670056	G	A	SNP	PXDN	ENST00000433670	human	ensembl	69_37n	-1	known	missense	c.1208	p.A403V	0.255	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PXDN	HGNC	ENSG00000130508	124	0	0	54	6	10	-	-	-	A	1670056	G	A	1670056	3	1	761	1	0	0	0	0	1	0	0	0	12930	1078	38	1	3274	1	PXDN	2	1670056	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		1670056	241529317	1	66421										
MYH15	0	genome.wustl.edu	37	chr3	108129643	108129643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	cagcctggctgctgcagagcGgaccttcccgaggtcagaca	13	14	1	2			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	3	108129643	108129643	G	T	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.4342	p.R1448S	0.074	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	58	0	0	43	5	10.42	-	-	-	T	108129643	G	T	108129643	3	4	761	1	0	0	0	0	1	0	0	0	10106	1116	39	3	1542	3	MYH15	3	108129643	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		108129643	89892787	2	66422										
GAP43	0	genome.wustl.edu	37	chr3	115382754	115382754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	cttggcttcttgactttctgGatttcaagggtaattttacc	8	8	3	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	3	115382754	115382754	G	T	SNP	GAP43	ENST00000393780	human	ensembl	69_37n	1	putative	missense	c.129	p.W43C	0.000	NULL	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	591	1	0.17	264	36	12	-	-	-	T	115382754	G	T	115382754	3	4	761	1	0	0	0	0	1	0	0	0	6285	1183	41	2	165	2	GAP43	3	115382754	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	7253111	115382754	82639676	3	66423										
HSPBAP1	0	genome.wustl.edu	37	chr3	122459884	122459884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	accaggctctggtattttgtGgattctctgcagttttcagg	11	8	3	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	3	122459884	122459884	G	A	SNP	HSPBAP1	ENST00000306103	human	ensembl	69_37n	-1	known	missense	c.902	p.P301L	0.677	pfam_JmjC_dom,prints_HSPB1-associated_protein_1	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087	413	0	0	226	38	14.39	-	-	-	A	122459884	G	A	122459884	3	1	761	1	0	0	0	0	1	0	0	0	7479	1348	47	4	572	4	HSPBAP1	3	122459884	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	7077130	122459884	75562546	4	66424										
TLR3	0	genome.wustl.edu	37	chr4	187003591	187003591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	aattagcaaacacaagcattCggaatctgtctctgagtaac	7	9	2	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	4	187003591	187003591	C	T	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.751	p.R251W	0.006	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	367	0	0	109	60	35.5	-	-	-	T	187003591	C	T	187003591	3	4	761	1	0	0	0	0	1	0	0	0	16047	875	31	1	761	1	TLR3	4	187003591	Missense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		187003591	4150685	5	66425										
CTNND2	0	genome.wustl.edu	37	chr5	11346626	11346626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ggggtccgcgtaattggaggCtgggccggcggcatagctgg	20	9	0	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	5	11346626	11346626	C	G	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.1486	p.A496P	0.994	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	144	1	0.69	124	21	14.48	-	-	-	G	11346626	C	G	11346626	3	3	761	1	0	0	0	0	1	0	0	0	4052	797	28	4	2247	4	CTNND2	5	11346626	Missense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		11346626	169568634	6	66426										
TARS	0	genome.wustl.edu	37	chr5	33453503	33453503	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	agcttctcaagtttgaggatGaggaagctcaggcagtaagt	13	6	2	2			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	5	33453503	33453503	G	A	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.439	p.E147K	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	228	0	0	113	24	17.52	-	-	-	A	33453503	G	A	33453503	3	1	761	1	0	0	0	0	1	0	0	0	15651	1291	45	2	453	2	TARS	5	33453503	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	22106877	33453503	147461757	7	66427										
RDBP	0	genome.wustl.edu	37	chr6	31922367	31922367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ctcggtctcggtctcgatccCgctcccgatccctgtcccgt	9	19	2	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	6	31922367	31922367	C	T	SNP	RDBP	ENST00000375429	human	ensembl	69_37n	-1	known	missense	c.707	p.R236Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RDBP	HGNC	ENSG00000204356	146	0	0	131	17	11.41	-	-	-	T	31922367	C	T	31922367	3	4	761	1	0	0	0	0	1	0	0	0	13271	652	23	1	455	1	RDBP	6	31922367	Missense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		31922367	139192700	8	66428										
HECW1	0	genome.wustl.edu	37	chr7	43591895	43591895	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	atagctggcaccgcggaaatCgacctaaatgactggcggaa	12	10	0	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	7	43591895	43591895	C	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	silent	c.4470	p.I1490	0.306	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	362	0	0	218	44	16.79	-	-	-	A	43591895	C	A	43591895	2	1	761	1	0	0	0	0	0	0	0	1	7093	874	31	3		3	HECW1	7	43591895	Silent	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		43591895	115546768	9	66429										
IQSEC3	0	genome.wustl.edu	37	chr12	176120	176120	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ctcacggccatcgtgcagaaCcagcagagcctcatccacac	8	17	2	2			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	12	176120	176120	C	G	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.72	p.N24K	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	10	0	0	8	4	33.33	-	-	-	G	176120	C	G	176120	3	3	761	1	0	0	0	0	1	0	0	0	7873	506	18	4	74	4	IQSEC3	12	176120	Missense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		176120	133675775	10	66430										
PIWIL1	0	genome.wustl.edu	37	chr12	130855727	130855728	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	tctgtaattccaggtatgacINSttttttatcgtgagccaggc							TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	12	130855727	130855728	-	T	INS	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	frame_shift_ins	c.2328_2329	p.I778fs	0.984:1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	659	0	0	264	46	14.84	-	-	-	T	130855728	-	T	130855727	7	5	761	1	0	1	1	0	0	0	0	0	12031	564	20	0	2402	0	PIWIL1	12	130855727	Frame_Shift_Ins	INS	-	TCGA-E2-A14X-01A-11D-A10Y-09	130679607	130855727	2996168	11	66431										
TUBA3C	0	genome.wustl.edu	37	chr13	19748195	19748195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ttatggtccaggcgagcccaGgcctccgcgatggccgtggt	15	13	0	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	13	19748195	19748195	G	A	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	silent	c.1161	p.A387	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	260	0	0	186	34	15.45	-	-	-	A	19748195	G	A	19748195	2	1	761	1	0	0	0	0	0	0	0	1	16843	987	35	4		4	TUBA3C	13	19748195	Silent	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		19748195	95421683	12	66432										
OR6S1	0	genome.wustl.edu	37	chr14	21109743	21109743	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	cctgtcagattcaggagataGacaagaagaaacacagaaaa	9	7	2	6			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	14	21109743	21109743	G	C	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	silent	c.108	p.V36	0.953	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	138	0	0	47	16	25	-	-	-	C	21109743	G	C	21109743	2	2	761	1	0	0	0	0	0	0	0	1	11282	929	33	2		2	OR6S1	14	21109743	Silent	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		21109743	86239797	13	66433										
G2E3	0	genome.wustl.edu	37	chr14	31071093	31071093	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	gaatgtaggggtattatctaCaattcaggtaatttttttgt	9	3	2	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	14	31071093	31071093	C	T	SNP	G2E3	ENST00000548934	human	ensembl	69_37n	1	known	nonsense	c.160	p.Q54*	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	G2E3	HGNC	ENSG00000092140	320	0	0	104	44	29.73	-	-	-	T	31071093	C	T	31071093	4	4	761	1	0	0	0	0	0	1	0	0	6189	489	17	4	900	4	G2E3	14	31071093	Nonsense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09	9961350	31071093	76278447	14	66434										
ARHGAP5	0	genome.wustl.edu	37	chr14	32562091	32562091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	acctgctggtacatatcctcGtaaatttaatgaaacccaaa	5	10	0	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	14	32562091	32562091	G	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	69_37n	1	known	missense	c.2216	p.R739H	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	164	0	0	69	9	11.54	-	-	-	A	32562091	G	A	32562091	3	1	761	1	0	0	0	0	1	0	0	0	888	1145	40	1	2218	1	ARHGAP5	14	32562091	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	1490998	32562091	74787449	15	66435										
AQR	0	genome.wustl.edu	37	chr15	35168164	35168164	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	gaagagggataaaagtttctAtctccagaatctgagcagcc	10	8	3	3			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	15	35168164	35168164	A	G	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	missense	c.3209	p.I1070T	1.000	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	301	0	0	121	50	29.24	-	-	-	G	35168164	A	G	35168164	3	3	761	1	0	0	0	0	1	0	0	0	837	449	16	5	1280	5	AQR	15	35168164	Missense_Mutation	SNP	A	TCGA-E2-A14X-01A-11D-A10Y-09		35168164	67363228	16	66436										
ZFP106	0	genome.wustl.edu	37	chr15	42740787	42740787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ttcttgccaagccaggggacGaggaaatggaaacaccttcc	11	11	1	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	15	42740787	42740787	G	C	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.2549	p.S850W	0.472	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	143	0	0	58	22	27.5	-	-	-	C	42740787	G	C	42740787	3	2	761	1	0	0	0	0	1	0	0	0	17733	1059	37	3	3170	3	ZFP106	15	42740787	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	7572623	42740787	59790605	17	66437										
WFIKKN1	0	genome.wustl.edu	37	chr16	682837	682837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	acaaccgctgctatatggacGccgaggcctgcctgcggggc	14	14	0	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	16	682837	682837	G	A	SNP	WFIKKN1	ENST00000319070	human	ensembl	69_37n	1	known	missense	c.427	p.A143T	0.996	pfam_Kazal-type_dom	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578	21	0	0	9	6	40	-	-	-	A	682837	G	A	682837	3	1	761	1	0	0	0	0	1	0	0	0	17455	1087	38	1	433	1	WFIKKN1	16	682837	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		682837	89671916	18	66438										
USP31	0	genome.wustl.edu	37	chr16	23116870	23116870	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	atgcagtgagaacatttgccTtgatacactacagtgacata	8	8	0	3			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	16	23116870	23116870	T	C	SNP	USP31	ENST00000219689	human	ensembl	69_37n	-1	known	silent	c.981	p.Q327	0.998	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP31	HGNC	ENSG00000103404	267	0	0	139	48	25.53	-	-	-	C	23116870	T	C	23116870	2	2	761	1	0	0	0	0	0	0	0	1	17159	1606	56	5		5	USP31	16	23116870	Silent	SNP	T	TCGA-E2-A14X-01A-11D-A10Y-09	22434033	23116870	67237883	19	66439										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	555	0	0	166	97	36.6	-	-	-	A	7578212	G	A	7578212	4	1	761	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09		7578212	73616998	20	66440										
DNAH17	0	genome.wustl.edu	37	chr17	76471537	76471537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ctgcagatgtgagccacggcGtcctcaaacagcacctgcag	11	14	1	2			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	17	76471537	76471537	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	silent	c.8292	p.D2764	0.572	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	82	0	0	24	11	31.43	-	-	-	A	76471537	G	A	76471537	2	1	761	1	0	0	0	0	0	0	0	1	4637	1136	40	1		1	DNAH17	17	76471537	Silent	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	68893325	76471537	4723673	21	66441										
ZNF91	0	genome.wustl.edu	37	chr19	23542476	23542476	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	cacatttgtagggtttctctCcggtgtgcaacctcttatgt	9	10	2	0			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	19	23542476	23542476	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.3305	p.G1102A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	517	0	0	127	62	32.8	-	-	-	G	23542476	C	G	23542476	3	3	761	1	0	0	0	0	1	0	0	0	18293	855	30	2	274	2	ZNF91	19	23542476	Missense_Mutation	SNP	C	TCGA-E2-A14X-01A-11D-A10Y-09		23542476	35586507	22	66442										
NAP1L2	0	genome.wustl.edu	37	chrX	72433234	72433234	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	ttgaaaaatgaatccttgggAaaatcttcagttacagttcg	8	6	2	2			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	X	72433234	72433234	A	G	SNP	NAP1L2	ENST00000373517	human	ensembl	69_37n	-1	known	silent	c.1095	p.F365	0.956	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462	238	0	0	62	14	18.42	-	-	-	G	72433234	A	G	72433234	2	3	761	1	0	0	0	0	0	0	0	1	10229	243	9	5		5	NAP1L2	23	72433234	Silent	SNP	A	TCGA-E2-A14X-01A-11D-A10Y-09		72433234	82837326	23	66443										
PLXNA3	0	genome.wustl.edu	37	chrX	153699919	153699919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.904872247913239	0.954901960784314	1.62333333333333	0.676388888888889	1	1	0	agtcccgcctccacgccagcGacttcagcgtcctgagtgcg	11	17	1	1			TCGA-E2-A14X-01A-11D-A10Y-09	TCGA-E2-A14X-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74039acd-5aca-4c65-818c-3b577d295be0	764eea81-96aa-4302-a9e1-477e4cd25a5d	X	153699919	153699919	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.5458	p.D1820N	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	154	0	0	103	16	13.45	-	-	-	A	153699919	G	A	153699919	3	1	761	1	0	0	0	0	1	0	0	0	12195	1058	37	1	5580	1	PLXNA3	23	153699919	Missense_Mutation	SNP	G	TCGA-E2-A14X-01A-11D-A10Y-09	81266685	153699919	1570641	24	66444										
ATP1A1	0	genome.wustl.edu	37	chr1	116933404	116933404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tgttttcttgcctccatcagGtgtctcttttgacaagactt	7	10	3	2			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	1	116933404	116933404	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	1	known	missense	c.1223	p.G408D	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	483	1	0.21	134	204	60.36	-	-	-	A	116933404	G	A	116933404	3	1	762	1	0	0	0	0	1	0	0	0	1132	1275	44	4	1277	4	ATP1A1	1	116933404	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09		116933404	132317217	1	66445										
FLG	0	genome.wustl.edu	37	chr1	152278409	152278409	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gtgtctggagctgtctgctgActgctggtggtgggatccat	16	8	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	1	152278409	152278409	A	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8953	p.S2985T	0.002	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	22	0	0	21	15	41.67	-	-	-	T	152278409	A	T	152278409	3	4	762	1	0	0	0	0	1	0	0	0	5968	275	10	5	3236	5	FLG	1	152278409	Missense_Mutation	SNP	A	TCGA-E2-A14Y-01A-21D-A12B-09	35345005	152278409	96972212	2	66446										
OR10K1	0	genome.wustl.edu	37	chr1	158436273	158436273	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tacgaagaacaatcggccaaActttctatcctcttagttaa	5	10	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	1	158436273	158436273	A	T	SNP	OR10K1	ENST00000289451	human	ensembl	69_37n	1	known	missense	c.922	p.T308S	0.009	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285	227	0	0	201	87	30.21	-	-	-	T	158436273	A	T	158436273	3	4	762	1	0	0	0	0	1	0	0	0	10986	43	2	5	924	5	OR10K1	1	158436273	Missense_Mutation	SNP	A	TCGA-E2-A14Y-01A-21D-A12B-09	6157864	158436273	90814348	3	66447										
RGPD4	0	genome.wustl.edu	37	chr2	108460141	108460141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tgctaatcttatgcttcttaCgctttccactagagatgtgc	7	10	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	2	108460141	108460141	C	T	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.737	p.T246M	0.967	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	27	0	0	14	6	30	-	-	-	T	108460141	C	T	108460141	3	4	762	1	0	0	0	0	1	0	0	0	13371	536	19	1	759	1	RGPD4	2	108460141	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		108460141	134739232	4	66448										
LAMB2	0	genome.wustl.edu	37	chr3	49159432	49159432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	ccactgccccccggatggcaCcctgggcaataccctgtgcc	10	19	0	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	3	49159432	49159432	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.4868	p.G1623D	0.816	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	95	0	0	65	44	40.37	-	-	-	T	49159432	C	T	49159432	3	4	762	1	0	0	0	0	1	0	0	0	8665	507	18	4	544	4	LAMB2	3	49159432	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		49159432	148862998	5	66449										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	283	0	0	131	96	42.29	-	-	-	G	178952085	A	G	178952085	3	3	762	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A14Y-01A-21D-A12B-09	129792653	178952085	19070345	6	66450										
RGS12	0	genome.wustl.edu	37	chr4	3432479	3432479	+	Frame_Shift_Del	DEL	C	C	-													0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gcccttctgcactccccagtCccccgtctccctcgcgcagg							TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	4	3432479	3432479	C	-	DEL	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	frame_shift_del	c.3911	p.V1306fs	0.311	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	9	0	0	4	2	33.33	-	-	-	-	3432479	C	-	3432479	7	5	762	1	0	1	0	1	0	0	0	0	13379	855	30	0	4031	0	RGS12	4	3432479	Frame_Shift_Del	DEL	C	TCGA-E2-A14Y-01A-21D-A12B-09		3432479	187721797	7	66451										
FGFBP2	0	genome.wustl.edu	37	chr4	15964689	15964689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gcttccttgcttttgcctcgGggcctgacccaaagtcccca	9	16	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	4bca2c1c-af66-454e-a3a0-18f0e11318c8	4	15964689	15964689	G	T	SNP	FGFBP2	ENST00000259989	human	ensembl	69_37n	-1	known	missense	c.64	p.P22T	0.162	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441	59	0	0	35	22	38.6	-	-	-	T	15964689	G	T	15964689	3	4	762	1	0	0	0	0	1	0	0	0	5907	1232	43	4	611	4	FGFBP2	4	15964689	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	12532210	15964689	175189587	8	66452										
MTRR	0	genome.wustl.edu	37	chr5	7889262	7889262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	acagtgctgaaaagcgcaggCtacaggagctgtgcagtaaa	13	8	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	5	7889262	7889262	C	G	SNP	MTRR	ENST00000264668	human	ensembl	69_37n	1	known	missense	c.1282	p.L428V	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin,pfscan_Flavodoxin/NO_synth	-	no_errors	MTRR	HGNC	ENSG00000124275	209	0	0	250	182	42.03	-	-	-	G	7889262	C	G	7889262	3	3	762	1	0	0	0	0	1	0	0	0	10033	796	28	4	1316	4	MTRR	5	7889262	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		7889262	173025998	9	66453										
SYNCRIP	0	genome.wustl.edu	37	chr6	86332352	86332353	+	Frame_Shift_Del	DEL	TG	TG	-													0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	ttcaagaaagcaaaagcctcTgttttttttcttgtcatccg							TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	6	86332352	86332353	TG	-	DEL	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	frame_shift_del	c.856_855	p.N285fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	405	0	0	259	71	21.52	-	-	-	-	86332353	TG	-	86332352	7	5	762	1	0	1	0	1	0	0	0	0	15536	1588	55	0	1077	0	SYNCRIP	6	86332352	Frame_Shift_Del	DEL	TG	TCGA-E2-A14Y-01A-21D-A12B-09		86332352	84782715	10	66454										
ACTB	0	genome.wustl.edu	37	chr7	5569207	5569207	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gatggaggggaagacggcccGgggggcatcgtcgcccgcga	20	11	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	7	5569207	5569207	G	T	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	silent	c.82	p.R28	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	19	0	0	15	6	28.57	-	-	-	T	5569207	G	T	5569207	2	4	762	1	0	0	0	0	0	0	0	1	193	1115	39	3		3	ACTB	7	5569207	Silent	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09		5569207	153569456	11	66455										
EFHA2	0	genome.wustl.edu	37	chr8	16961987	16961987	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gaaaagctgagctcaactttGaagatttttataggtgagct	10	5	1	4			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	8	16961987	16961987	G	C	SNP	EFHA2	ENST00000318063	human	ensembl	69_37n	1	known	missense	c.1072	p.E358Q	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA2	HGNC	ENSG00000155970	117	0	0	18	25	56.82	-	-	-	C	16961987	G	C	16961987	3	2	762	1	0	0	0	0	1	0	0	0	4979	1291	45	2	1110	2	EFHA2	8	16961987	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09		16961987	129402035	12	66456										
ANK1	0	genome.wustl.edu	37	chr8	41582042	41582042	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	cacgttgaggttctcgtagtGagccgcaatgtgcaggggcg	16	9	1	2			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	8	41582042	41582042	G	A	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.643	p.H215Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	99	0	0	26	32	55.17	-	-	-	A	41582042	G	A	41582042	3	1	762	1	0	0	0	0	1	0	0	0	620	1290	45	2	5500	2	ANK1	8	41582042	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	24620055	41582042	104781980	13	66457										
HAUS6	0	genome.wustl.edu	37	chr9	19096691	19096691	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	cttgaaaacttctttggtgaGagactggtccagaacttgaa	10	7	1	5			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	9	19096691	19096691	G	C	SNP	HAUS6	ENST00000380502	human	ensembl	69_37n	-1	known	missense	c.205	p.L69V	0.991	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	270	0	0	122	54	30.68	-	-	-	C	19096691	G	C	19096691	3	2	762	1	0	0	0	0	1	0	0	0	7021	942	33	2	2726	2	HAUS6	9	19096691	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09		19096691	122116740	14	66458										
GPRIN2	0	genome.wustl.edu	37	chr10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gccgggaacagaggccagagCtccgcaagactgccagcagc	14	14	0	3			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	4bca2c1c-af66-454e-a3a0-18f0e11318c8	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	12	0	0	16	5	23.81	-	-	-	G	46998995	C	G	46998995	3	3	762	1	0	0	0	0	1	0	0	0	6781	797	28	4	117	4	GPRIN2	10	46998995	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		46998995	88535752	15	66459										
ANK3	0	genome.wustl.edu	37	chr10	61946501	61946501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tcaggttcacattcgcatttCtaccgaggagcagcgacacc	9	13	3	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	10	61946501	61946501	C	G	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.2057	p.R686T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	405	0	0	237	151	38.82	-	-	-	G	61946501	C	G	61946501	3	3	762	1	0	0	0	0	1	0	0	0	622	913	32	2	11517	2	ANK3	10	61946501	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09	14947506	61946501	73588246	16	66460										
PDZD8	0	genome.wustl.edu	37	chr10	119078457	119078457	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tgtgcaatgaacatttgcctCtctgtcataggatccaaaaa	7	9	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	10	119078457	119078457	C	T	SNP	PDZD8	ENST00000334464	human	ensembl	69_37n	-1	known	missense	c.1024	p.E342K	1.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650	471	0	0	233	99	29.73	-	-	-	T	119078457	C	T	119078457	3	4	762	1	0	0	0	0	1	0	0	0	11778	922	32	2	2452	2	PDZD8	10	119078457	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09	57131956	119078457	16456290	17	66461										
AHNAK	0	genome.wustl.edu	37	chr11	62297977	62297977	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	aacttggggcccttcagcttTccttccgggccctcaaggct	10	15	2	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	11	62297977	62297977	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.3912	p.G1304	0.492	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	397	0	0	227	187	45.06	-	-	-	C	62297977	T	C	62297977	2	2	762	1	0	0	0	0	0	0	0	1	414	1770	62	5		5	AHNAK	11	62297977	Silent	SNP	T	TCGA-E2-A14Y-01A-21D-A12B-09		62297977	72708539	18	66462										
PLEKHG6	0	genome.wustl.edu	37	chr12	6426507	6426507	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	ccctatgtccagtactgcctCcgagtgaagcagaccatggc	10	14	0	2			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	12	6426507	6426507	C	T	SNP	PLEKHG6	ENST00000011684	human	ensembl	69_37n	1	known	silent	c.795	p.L265	0.868	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323	204	0	0	134	66	33	-	-	-	T	6426507	C	T	6426507	2	4	762	1	0	0	0	0	0	0	0	1	12148	842	30	2		2	PLEKHG6	12	6426507	Silent	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		6426507	127425388	19	66463										
MGA	0	genome.wustl.edu	37	chr15	42002989	42002989	+	Frame_Shift_Del	DEL	G	G	-													0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	aagctgatggaaacaagcatGggtttttcttctaatgctcc							TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	15	42002989	42002989	G	-	DEL	MGA	ENST00000219905	human	ensembl	69_37n	1	known	frame_shift_del	c.2526	p.G843fs	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	315	1	0.32	220	98	30.63	-	-	-	-	42002989	G	-	42002989	7	5	762	1	0	1	0	1	0	0	0	0	9611	1348	47	0	2552	0	MGA	15	42002989	Frame_Shift_Del	DEL	G	TCGA-E2-A14Y-01A-21D-A12B-09		42002989	60528403	20	66464										
TIPIN	0	genome.wustl.edu	37	chr15	66629421	66629421	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	agcatcattacatggattgtCcagaatgtcttcgtttaatc	7	8	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	15	66629421	66629421	C	G	SNP	TIPIN	ENST00000261881	human	ensembl	69_37n	-1	known	missense	c.781	p.D261H	0.003	NULL	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131	494	0	0	270	188	41.05	-	-	-	G	66629421	C	G	66629421	3	3	762	1	0	0	0	0	1	0	0	0	16020	855	30	2	128	2	TIPIN	15	66629421	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09	24626432	66629421	35901971	21	66465										
SNTB2	0	genome.wustl.edu	37	chr16	69294160	69294160	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	catattgcctggctggcagaAcaggtaggctgggaggcagg	17	8	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	16	69294160	69294160	A	G	SNP	SNTB2	ENST00000336278	human	ensembl	69_37n	1	known	silent	c.1002	p.E334	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB2	HGNC	ENSG00000168807	205	1	0.49	45	90	66.67	-	-	-	G	69294160	A	G	69294160	2	3	762	1	0	0	0	0	0	0	0	1	14962	40	2	5		5	SNTB2	16	69294160	Silent	SNP	A	TCGA-E2-A14Y-01A-21D-A12B-09		69294160	21060593	22	66466										
ARRB2	0	genome.wustl.edu	37	chr17	4621248	4621248	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gaaacccggcccccagccttCagccgaaaccacacgccact	7	20	1	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	17	4621248	4621248	C	T	SNP	ARRB2	ENST00000269260	human	ensembl	69_37n	1	known	missense	c.551	p.S184L	0.991	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARRB2	HGNC	ENSG00000141480	119	0	0	43	53	55.21	-	-	-	T	4621248	C	T	4621248	3	4	762	1	0	0	0	0	1	0	0	0	985	838	29	2	581	2	ARRB2	17	4621248	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		4621248	76573962	23	66467										
TP53	0	genome.wustl.edu	37	chr17	7578524	7578524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	agggcaggtcttggccagttGgcaaaacatcttgttgaggg	15	7	2	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	17	7578524	7578524	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.406	p.Q136E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	152	1	0.65	49	75	59.52	-	-	-	C	7578524	G	C	7578524	3	2	762	1	0	0	0	0	1	0	0	0	16477	1357	47	4	892	4	TP53	17	7578524	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	2957276	7578524	73616686	24	66468										
SREBF1	0	genome.wustl.edu	37	chr17	17716089	17716090	+	Frame_Shift_Ins	INS	-	-	AG													0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	ccgacaggaagccggggggcINSaggtagcaggaggccagcag							TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	17	17716089	17716090	-	AG	INS	SREBF1	ENST00000355815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3381_3380	p.P1128fs	1.000:1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF1	HGNC	ENSG00000072310	9	0	0	11	4	26.67	-	-	-	AG	17716090	-	AG	17716089	7	5	762	1	0	1	1	0	0	0	0	0	15232	697	25	0	156	0	SREBF1	17	17716089	Frame_Shift_Ins	INS	-	TCGA-E2-A14Y-01A-21D-A12B-09	10137565	17716089	63479121	25	66469										
SEZ6	0	genome.wustl.edu	37	chr17	27296863	27296863	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tggtgggtggggctgcggatGacttggccccgcagcaggaa	19	9	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	17	27296863	27296863	G	A	SNP	SEZ6	ENST00000540419	human	ensembl	69_37n	-1	known	missense	c.464	p.S155L	1.000	superfamily_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEZ6	HGNC	ENSG00000063015	72	0	0	115	32	21.62	-	-	-	A	27296863	G	A	27296863	3	1	762	1	0	0	0	0	1	0	0	0	14230	1277	45	2	2087	2	SEZ6	17	27296863	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	9580774	27296863	53898347	26	66470										
KANK2	0	genome.wustl.edu	37	chr19	11277272	11277272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	tgatgtagggctctcgtcatCtgacattggggcaaactgaa	12	8	3	3			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	19	11277272	11277272	C	T	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.2542	p.D848N	0.985	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	313	0	0	183	71	27.95	-	-	-	T	11277272	C	T	11277272	3	4	762	1	0	0	0	0	1	0	0	0	8031	913	32	2	41	2	KANK2	19	11277272	Missense_Mutation	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09		11277272	47851711	27	66471										
AKAP8L	0	genome.wustl.edu	37	chr19	15511970	15511970	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	cctccactcactcggaagtcGgctgtggtccaggtcttcca	10	15	2	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	19	15511970	15511970	G	C	SNP	AKAP8L	ENST00000397410	human	ensembl	69_37n	-1	known	silent	c.807	p.A269	0.003	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243	131	0	0	101	44	30.34	-	-	-	C	15511970	G	C	15511970	2	2	762	1	0	0	0	0	0	0	0	1	458	1103	39	3		3	AKAP8L	19	15511970	Silent	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	4234698	15511970	43617013	28	66472										
ZNF540	0	genome.wustl.edu	37	chr19	38104051	38104051	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gacttaattcacaccttactGaacatcagagaattcacact	4	11	3	2			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	19	38104051	38104051	G	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1870	p.E624K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	98	0	0	55	40	42.11	-	-	-	A	38104051	G	A	38104051	3	1	762	1	0	0	0	0	1	0	0	0	18071	1291	45	2	1884	2	ZNF540	19	38104051	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	22592081	38104051	21024932	29	66473										
LMTK3	0	genome.wustl.edu	37	chr19	49014822	49014822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	gcaaggaggatgagggcgccGggggcaggcatcttgtcgag	20	8	1	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	19	49014822	49014822	G	A	SNP	LMTK3	ENST00000270238	human	ensembl	69_37n	-1	known	silent	c.99	p.P33	0.889	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	28	0	0	20	25	55.56	-	-	-	A	49014822	G	A	49014822	2	1	762	1	0	0	0	0	0	0	0	1	8916	1103	39	1		1	LMTK3	19	49014822	Silent	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09	10910771	49014822	10114161	30	66474										
SPIB	0	genome.wustl.edu	37	chr19	50926253	50926253	+	Frame_Shift_Del	DEL	C	C	-													0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	ccagcctggaggccccggggCctggcctccctgcatacccc							TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	4bca2c1c-af66-454e-a3a0-18f0e11318c8	19	50926253	50926253	C	-	DEL	SPIB	ENST00000270632	human	ensembl	69_37n	1	known	frame_shift_del	c.298	p.P100fs	0.982	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	SPIB	HGNC	ENSG00000142539	12	0	0	10	6	37.5	-	-	-	-	50926253	C	-	50926253	7	5	762	1	0	1	0	1	0	0	0	0	15141	739	26	0	312	0	SPIB	19	50926253	Frame_Shift_Del	DEL	C	TCGA-E2-A14Y-01A-21D-A12B-09	1911431	50926253	8202730	31	66475										
EPN1	0	genome.wustl.edu	37	chr19	56206663	56206663	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	cccttggcgggggccctggcCtgccccccatgatgcccccg	13	20	0	1			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	19	56206663	56206663	C	T	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	silent	c.1930	p.L644	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	22	0	0	12	9	42.86	-	-	-	T	56206663	C	T	56206663	2	4	762	1	0	0	0	0	0	0	0	1	5222	680	24	4		4	EPN1	19	56206663	Silent	SNP	C	TCGA-E2-A14Y-01A-21D-A12B-09	5280410	56206663	2922320	32	66476										
KIAA1210	0	genome.wustl.edu	37	chrX	118284280	118284280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.272727272727273	9	0.00248467049839057	3.76190476190476	3.29166666666667	4.05128205128205	0.346935417523653	0.950412796697626	7	accaagtggtagggaatcgcGgtgtgcagggcaggaagccc	17	9	0	0			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f63f0927-5186-4558-853d-4eed95ba0ac8	1297e0da-fbf8-4566-8f22-17095e4031f4	X	118284280	118284280	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.263	p.P88L	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	112	0	0	99	64	39.26	-	-	-	A	118284280	G	A	118284280	3	1	762	1	0	0	0	0	1	0	0	0	8266	1116	39	1	4922	1	KIAA1210	23	118284280	Missense_Mutation	SNP	G	TCGA-E2-A14Y-01A-21D-A12B-09		118284280	36986280	33	66477										
GMEB1	0	genome.wustl.edu	37	chr1	29023445	29023445	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ctccctttgcacaggaaaatGatggactccggacagattga	10	10	0	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	1	29023445	29023445	G	A	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	1	known	missense	c.477	p.M159I	1.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	85	0	0	107	16	13.01	-	-	-	A	29023445	G	A	29023445	3	1	763	1	0	0	0	0	1	0	0	0	6539	1290	45	2	495	2	GMEB1	1	29023445	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		29023445	220227176	1	66478										
AMPD1	0	genome.wustl.edu	37	chr1	115226908	115226908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ttagggaacctctgaaacgaCttctgcatgtatttctcacg	8	10	3	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	1	115226908	115226908	C	G	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.558	p.K186N	0.999	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	122	0	0	112	21	15.79	-	-	-	G	115226908	C	G	115226908	3	3	763	1	0	0	0	0	1	0	0	0	585	564	20	4	1832	4	AMPD1	1	115226908	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	86203463	115226908	134023713	2	66479										
TATDN3	0	genome.wustl.edu	37	chr1	212985604	212985604	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tctaagaagcagaaacttgtGaaacaattgcctttaacttc	6	8	1	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	1	212985604	212985604	G	A	SNP	TATDN3	ENST00000526997	human	ensembl	69_37n	1	putative	missense	c.499	p.E167K	1.000	pirsf_DNase_TatD	pfam_TatD_superfamily,pirsf_DNase_TatD	-	no_errors	TATDN3	HGNC	ENSG00000203705	105	0	0	107	59	35.54	-	-	-	A	212985604	G	A	212985604	3	1	763	1	0	0	0	0	1	0	0	0	15685	1277	45	2	670	2	TATDN3	1	212985604	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	97758696	212985604	36265017	3	66480										
TGFBRAP1	0	genome.wustl.edu	37	chr2	105897089	105897089	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gttcaggtctgcgtactcatGaagaggagggtgggaccggg	18	7	3	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	2	105897089	105897089	G	A	SNP	TGFBRAP1	ENST00000258449	human	ensembl	69_37n	-1	known	missense	c.1213	p.H405Y	1.000	NULL	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	112	0	0	215	28	11.52	-	-	-	A	105897089	G	A	105897089	3	1	763	1	0	0	0	0	1	0	0	0	15919	1290	45	2	1397	2	TGFBRAP1	2	105897089	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		105897089	137302284	4	66481										
SLC4A7	0	genome.wustl.edu	37	chr3	27418337	27418337	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cactcacaggtttatcaggaCtatttaaaacaaagaattaa	5	7	2	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	27418337	27418337	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	69_37n	-1	known	splice_site	c.3699-1	e26-1	1.000	-	-	-	no_errors	SLC4A7	HGNC	ENSG00000033867	214	0	0	96	37	27.82	-	-	-	T	27418337	C	T	27418337	5	4	763	1	0	0	0	0	0	0	1	0	14747	579	20	4	85	4	SLC4A7	3	27418337	Splice_Site	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		27418337	170604093	5	66482										
XIRP1	0	genome.wustl.edu	37	chr3	39226889	39226889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cacctccgaggaaaagctggGagatagaggcaagggcttgg	16	8	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	39226889	39226889	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.4048	p.P1350S	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	63	0	0	68	17	20	-	-	-	A	39226889	G	A	39226889	3	1	763	1	0	0	0	0	1	0	0	0	17526	1174	41	2	1487	2	XIRP1	3	39226889	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	11808552	39226889	158795541	6	66483										
RBM6	0	genome.wustl.edu	37	chr3	50005657	50005657	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gacaccgatctaggactgatCaggattttaggggcagagag	14	7	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	50005657	50005657	C	A	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	missense	c.799	p.Q267K	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	99	0	0	144	22	13.25	-	-	-	A	50005657	C	A	50005657	3	1	763	1	0	0	0	0	1	0	0	0	13227	827	29	2	805	2	RBM6	3	50005657	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	10778768	50005657	148016773	7	66484										
ACY1	0	genome.wustl.edu	37	chr3	52019910	52019910	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ttgaggccttcaaggattctGagggctacatctatgccagg	12	9	3	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	52019910	52019910	G	C	SNP	ACY1	ENST00000458031	human	ensembl	69_37n	1	known	missense	c.577	p.E193Q	0.543	pfam_Peptidase_M20,tigrfam_N-acyl_aa_amidohydrolase	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,tigrfam_N-acyl_aa_amidohydrolase	-	no_errors	ACY1	HGNC	ENSG00000243989	66	0	0	108	34	23.94	-	-	-	C	52019910	G	C	52019910	3	2	763	1	0	0	0	0	1	0	0	0	226	1291	45	2	321	2	ACY1	3	52019910	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	2014253	52019910	146002520	8	66485										
IL17RD	0	genome.wustl.edu	37	chr3	57132384	57132384	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gctgacaccgccaccaggaaGagctctcctttccccgagcc	9	18	1	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	57132384	57132384	G	A	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	silent	c.1347	p.L449	1.000	pfam_SEFIR	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	40	0	0	60	11	15.49	-	-	-	A	57132384	G	A	57132384	2	1	763	1	0	0	0	0	0	0	0	1	7696	929	33	2		2	IL17RD	3	57132384	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	5112474	57132384	140890046	9	66486										
RASA2	0	genome.wustl.edu	37	chr3	141277776	141277776	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	agtcccagttccaggtagaaGaggaggacattgaaaagcta	12	7	0	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	141277776	141277776	G	T	SNP	RASA2	ENST00000452898	human	ensembl	69_37n	1	known	nonsense	c.733	p.E245*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903	125	0	0	100	20	16.67	-	-	-	T	141277776	G	T	141277776	4	4	763	1	0	0	0	0	0	1	0	0	13144	943	33	2	763	2	RASA2	3	141277776	Nonsense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	84145392	141277776	56744654	10	66487										
MUC4	0	genome.wustl.edu	37	chr3	195506421	195506421	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	agaggggtggcgtgacctgtAgatactgaggaagtgctggt	18	5	0	4			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	3	195506421	195506421	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.12030	p.S4010	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	17	0	0	34	11	24.44	-	-	-	G	195506421	A	G	195506421	2	3	763	1	0	0	0	0	0	0	0	1	10050	407	15	5		5	MUC4	3	195506421	Silent	SNP	A	TCGA-E2-A14Z-01A-11D-A10Y-09	54228645	195506421	2516009	11	66488										
GUCY1B3	0	genome.wustl.edu	37	chr4	156721140	156721140	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gaacaatttagagaggaataCaaactcacccaagaactgga	8	8	1	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	4	156721140	156721140	C	T	SNP	GUCY1B3	ENST00000264424	human	ensembl	69_37n	1	known	silent	c.1089	p.Y363	1.000	pfam_Haem_no_assoc-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1B3	HGNC	ENSG00000061918	95	0	0	146	23	13.61	-	-	-	T	156721140	C	T	156721140	2	4	763	1	0	0	0	0	0	0	0	1	6946	489	17	4		4	GUCY1B3	4	156721140	Silent	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		156721140	34433136	12	66489										
WDR70	0	genome.wustl.edu	37	chr5	37605229	37605229	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	agtgtgtttaaaccacggacGatgcaaggcaaaaaagtcat	10	7	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	37605229	37605229	G	A	SNP	WDR70	ENST00000265107	human	ensembl	69_37n	1	known	silent	c.981	p.T327	0.185	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068	96	0	0	145	18	11.04	-	-	-	A	37605229	G	A	37605229	2	1	763	1	0	0	0	0	0	0	0	1	17418	1045	37	1		1	WDR70	5	37605229	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		37605229	143310031	13	66490										
CARD6	0	genome.wustl.edu	37	chr5	40843622	40843622	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aagaggaatatctaggatctGttgacacccctgaagatgca	10	8	2	4			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	40843622	40843622	G	C	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	1	known	missense	c.652	p.V218L	0.001	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	83	0	0	123	38	23.6	-	-	-	C	40843622	G	C	40843622	3	2	763	1	0	0	0	0	1	0	0	0	2675	1377	48	4	658	4	CARD6	5	40843622	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	3238393	40843622	140071638	14	66491										
F2RL2	0	genome.wustl.edu	37	chr5	75914384	75914384	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	caaggcagaaaaggggaactCttcaaaagaatttgggggag	14	5	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	75914384	75914384	C	T	SNP	F2RL2	ENST00000296641	human	ensembl	69_37n	-1	known	missense	c.148	p.E50K	0.038	prints_Prot_act_rcpt_3	pfam_7TM_GPCR_Rhodpsn,prints_Prot_act_rcpt_3,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2RL2	HGNC	ENSG00000164220	76	0	0	39	25	38.46	-	-	-	T	75914384	C	T	75914384	3	4	763	1	0	0	0	0	1	0	0	0	5382	922	32	2	980	2	F2RL2	5	75914384	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	35070762	75914384	105000876	15	66492										
GPR98	0	genome.wustl.edu	37	chr5	90024745	90024745	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aatatttgccgaaaatgtctTtctaggtgagaagataaagt	9	4	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	90024745	90024745	T	G	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.10421	p.F3474C	0.111	superfamily_Gal_Oxase/kelch_b-propeller,pfscan_EAR	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	89	0	0	90	17	15.89	-	-	-	G	90024745	T	G	90024745	3	3	763	1	0	0	0	0	1	0	0	0	6772	1841	64	5	10615	5	GPR98	5	90024745	Missense_Mutation	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09	14110361	90024745	90890515	16	66493										
SPATA9	0	genome.wustl.edu	37	chr5	95011246	95011246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ccactgatttggaggatctgGatatgctgtttaatccacga	10	8	1	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	95011246	95011246	G	A	SNP	SPATA9	ENST00000274432	human	ensembl	69_37n	-1	known	missense	c.248	p.S83F	0.629	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757	211	0	0	265	48	15.34	-	-	-	A	95011246	G	A	95011246	3	1	763	1	0	0	0	0	1	0	0	0	15107	1174	41	2	528	2	SPATA9	5	95011246	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	4986501	95011246	85904014	17	66494										
TMCO6	0	genome.wustl.edu	37	chr5	140022500	140022500	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tcctacttacagccctgcttCtgccagcagctccatcttgg	7	16	2	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	140022500	140022500	C	T	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	1	known	missense	c.698	p.S233F	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	76	0	0	135	24	15.09	-	-	-	T	140022500	C	T	140022500	3	4	763	1	0	0	0	0	1	0	0	0	16095	928	32	2		2	TMCO6	5	140022500	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	45011254	140022500	40892760	18	66495										
PCDHB14	0	genome.wustl.edu	37	chr5	140604455	140604455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aaacctcctacaccctgttcGtccgcgagaacaacagcccc	6	18	0	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	140604455	140604455	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	missense	c.1378	p.V460I	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	41	0	0	88	21	19.27	-	-	-	A	140604455	G	A	140604455	3	1	763	1	0	0	0	0	1	0	0	0	11612	1145	40	1	1380	1	PCDHB14	5	140604455	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	581955	140604455	40310805	19	66496										
ATP10B	0	genome.wustl.edu	37	chr5	160059363	160059363	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gtccagctcctttggggtctCcagtcgcttagctgcaagaa	11	12	1	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	160059363	160059363	C	G	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.1393	p.E465Q	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	61	0	0	47	23	32.86	-	-	-	G	160059363	C	G	160059363	3	3	763	1	0	0	0	0	1	0	0	0	1121	864	30	2	3048	2	ATP10B	5	160059363	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	19454908	160059363	20855897	20	66497										
DDX41	0	genome.wustl.edu	37	chr5	176943429	176943429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ccgcagctcccttgcgtcttCgctgcagcagcttctggagc	11	16	2	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	5	176943429	176943429	C	T	SNP	DDX41	ENST00000507955	human	ensembl	69_37n	-1	known	missense	c.158	p.R53Q	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	43	0	0	44	11	20	-	-	-	T	176943429	C	T	176943429	3	4	763	1	0	0	0	0	1	0	0	0	4392	884	31	1	1770	1	DDX41	5	176943429	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	16884066	176943429	3971831	21	66498										
MSH5	0	genome.wustl.edu	37	chr6	31727737	31727737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cccacaagtccttggggtacGaatccagaatggcaggtaag	12	10	0	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	31727737	31727737	G	A	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.1721	p.R574Q	0.977	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	46	0	0	116	32	21.62	-	-	-	A	31727737	G	A	31727737	3	1	763	1	0	0	0	0	1	0	0	0	9945	1058	37	1	1787	1	MSH5	6	31727737	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		31727737	139387330	22	66499										
GSTA4	0	genome.wustl.edu	37	chr6	52849324	52849324	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	catgttaaccacttccttttGctgatcatctggttttaaga	6	9	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	52849324	52849324	G	A	SNP	GSTA4	ENST00000370959	human	ensembl	69_37n	-1	known	nonsense	c.352	p.Q118*	0.080	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA4	HGNC	ENSG00000170899	143	0	0	119	48	28.57	-	-	-	A	52849324	G	A	52849324	4	1	763	1	0	0	0	0	0	1	0	0	6884	1328	46	4	328	4	GSTA4	6	52849324	Nonsense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	21121587	52849324	118265743	23	66500										
EPHA7	0	genome.wustl.edu	37	chr6	94068126	94068126	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	acttgtagaacccacggccaCaggctgggaatgcaaaagaa	11	10	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	94068126	94068126	C	A	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	missense	c.836	p.C279F	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	87	0	0	100	35	25.93	-	-	-	A	94068126	C	A	94068126	3	1	763	1	0	0	0	0	1	0	0	0	5209	478	17	4	2216	4	EPHA7	6	94068126	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	41218802	94068126	77046941	24	66501										
GRIK2	0	genome.wustl.edu	37	chr6	102074363	102074363	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tctgggagttccccacatacAgacccgctggaagcaccagg	11	14	1	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	102074363	102074363	A	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.392	p.Q131P	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	116	0	0	128	47	26.86	-	-	-	C	102074363	A	C	102074363	3	2	763	1	0	0	0	0	1	0	0	0	6825	188	7	5	402	5	GRIK2	6	102074363	Missense_Mutation	SNP	A	TCGA-E2-A14Z-01A-11D-A10Y-09	8006237	102074363	69040704	25	66502										
MTHFD1L	0	genome.wustl.edu	37	chr6	151334924	151334924	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ccttatttcaggtaacggctGgtgttcctcttaagaaagaa	9	8	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	151334924	151334924	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	missense	c.2275	p.G759S	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	204	0	0	265	86	24.5	-	-	-	A	151334924	G	A	151334924	3	1	763	1	0	0	0	0	1	0	0	0	10000	1348	47	4	2361	4	MTHFD1L	6	151334924	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	49260561	151334924	19780143	26	66503										
SLC22A3	0	genome.wustl.edu	37	chr6	160858113	160858113	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tatatagactttttcatctcGggcgtggtggaactgccagg	12	8	2	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	6	160858113	160858113	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	69_37n	1	known	silent	c.1158	p.S386	0.984	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477	97	0	0	106	30	22.06	-	-	-	A	160858113	G	A	160858113	2	1	763	1	0	0	0	0	0	0	0	1	14544	1103	39	1		1	SLC22A3	6	160858113	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	9523189	160858113	10256954	27	66504										
MPP6	0	genome.wustl.edu	37	chr7	24718895	24718895	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ctctatggaaccaaaattgaTtctattcttgaggttgtcca	7	8	3	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	7	24718895	24718895	T	C	SNP	MPP6	ENST00000222644	human	ensembl	69_37n	1	known	silent	c.1260	p.D420	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP6	HGNC	ENSG00000105926	142	0	0	206	29	12.34	-	-	-	C	24718895	T	C	24718895	2	2	763	1	0	0	0	0	0	0	0	1	9810	1490	52	5		5	MPP6	7	24718895	Silent	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09		24718895	134419768	28	66505										
HOXA5	0	genome.wustl.edu	37	chr7	27181585	27181585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gaggcaaagagcatgtgctaTttcaatcctccttctgcggg	11	10	2	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	7	27181585	27181585	T	C	SNP	HOXA5	ENST00000222726	human	ensembl	69_37n	-1	known	missense	c.682	p.I228V	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004	96	0	0	173	85	32.95	-	-	-	C	27181585	T	C	27181585	3	2	763	1	0	0	0	0	1	0	0	0	7346	1493	52	5	134	5	HOXA5	7	27181585	Missense_Mutation	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09	2462690	27181585	131957078	29	66506										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138764558	138764559	+	Frame_Shift_Del	DEL	AC	AC	-													0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ggcaggtagcgtgggagaaaAcacagtctttctcctggcgc							TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	7	138764558	138764559	AC	-	DEL	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	frame_shift_del	c.1129_1128	p.P379fs	0.043:0.036	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	73	0	0	89	15	14.42	-	-	-	-	138764559	AC	-	138764558	7	5	763	1	0	1	0	1	0	0	0	0	17671	43	2	0	1623	0	ZC3HAV1	7	138764558	Frame_Shift_Del	DEL	AC	TCGA-E2-A14Z-01A-11D-A10Y-09	111582973	138764558	20374105	30	66507										
ARFGEF1	0	genome.wustl.edu	37	chr8	68178346	68178346	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tgtagctgcctattcctgatGatgatgttgactccagggaa	11	8	0	4			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	8	68178346	68178346	G	A	SNP	ARFGEF1	ENST00000262215	human	ensembl	69_37n	-1	known	missense	c.2018	p.S673L	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF1	HGNC	ENSG00000066777	287	0	0	553	109	16.42	-	-	-	A	68178346	G	A	68178346	3	1	763	1	0	0	0	0	1	0	0	0	854	1294	45	2	3635	2	ARFGEF1	8	68178346	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		68178346	78185676	31	66508										
CYP2C19	0	genome.wustl.edu	37	chr10	96580363	96580363	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	acaaccctgagatatgctctCcttctcctgctgaagcaccc	6	16	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	10	96580363	96580363	C	A	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	silent	c.930	p.L310	0.001	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	178	0	0	240	82	25.31	-	-	-	A	96580363	C	A	96580363	2	1	763	1	0	0	0	0	0	0	0	1	4197	842	30	2		2	CYP2C19	10	96580363	Silent	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		96580363	38954384	32	66509										
PKD2L1	0	genome.wustl.edu	37	chr10	102054793	102054793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gaaaacaatgaagaacatgaCggcgaagcccaggatgtcct	11	9	0	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	10	102054793	102054793	C	T	SNP	PKD2L1	ENST00000318222	human	ensembl	69_37n	-1	known	missense	c.1444	p.V482I	0.495	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593	76	0	0	137	21	13.29	-	-	-	T	102054793	C	T	102054793	3	4	763	1	0	0	0	0	1	0	0	0	12041	536	19	1	1009	1	PKD2L1	10	102054793	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	5474430	102054793	33479954	33	66510										
OR51Q1	0	genome.wustl.edu	37	chr11	5444328	5444328	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tttacagtgtaaagaacaagCagatccaatggggaatgtta	10	5	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	11	5444328	5444328	C	G	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	missense	c.898	p.Q300E	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	41	0	0	40	6	13.04	-	-	-	G	5444328	C	G	5444328	3	3	763	1	0	0	0	0	1	0	0	0	11177	711	25	4	900	4	OR51Q1	11	5444328	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		5444328	129562188	34	66511										
OR5R1	0	genome.wustl.edu	37	chr11	56185676	56185676	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gtaattcctttcagaatgaaTacagtgacataaatgatatt	6	5	1	4			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	11	56185676	56185676	T	C	SNP	OR5R1	ENST00000312253	human	ensembl	69_37n	-1	known	silent	c.33	p.V11	0.353	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	48	0	0	42	11	20.75	-	-	-	C	56185676	T	C	56185676	2	2	763	1	0	0	0	0	0	0	0	1	11253	1393	49	5		5	OR5R1	11	56185676	Silent	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09	50741348	56185676	78820840	35	66512										
ROM1	0	genome.wustl.edu	37	chr11	62381062	62381062	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cgaggggtcctgggcccgctGctggtggctggcacggctgg	20	12	0	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	11	62381062	62381062	G	T	SNP	ROM1	ENST00000278833	human	ensembl	69_37n	1	known	silent	c.309	p.L103	0.931	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489	18	0	0	26	8	23.53	-	-	-	T	62381062	G	T	62381062	2	4	763	1	0	0	0	0	0	0	0	1	13607	1306	46	4		4	ROM1	11	62381062	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	6195386	62381062	72625454	36	66513										
PKNOX2	0	genome.wustl.edu	37	chr11	125280153	125280153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	caataacccccaggggattgTggtcccagcctcagcgctcc	10	16	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	11	125280153	125280153	T	C	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	1	known	missense	c.650	p.V217A	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	43	0	0	85	16	15.69	-	-	-	C	125280153	T	C	125280153	3	2	763	1	0	0	0	0	1	0	0	0	12057	1696	59	5	668	5	PKNOX2	11	125280153	Missense_Mutation	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09	62899091	125280153	9726363	37	66514										
KIRREL3	0	genome.wustl.edu	37	chr11	126396533	126396533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	agtagcgtcactggctgtccCgacaccaccacctggtcctg	10	16	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	11	126396533	126396533	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	69_37n	-1	known	silent	c.183	p.S61	0.003	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL3	HGNC	ENSG00000149571	75	0	0	110	21	15.91	-	-	-	T	126396533	C	T	126396533	2	4	763	1	0	0	0	0	0	0	0	1	8379	639	23	1		1	KIRREL3	11	126396533	Silent	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	1116380	126396533	8609983	38	66515										
DTX1	0	genome.wustl.edu	37	chr12	113532664	113532664	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cgtgcttcggcacaagggcgTgcggcctgagctcgtgggcc	17	13	0	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	12	113532664	113532664	T	A	SNP	DTX1	ENST00000257600	human	ensembl	69_37n	1	known	missense	c.1298	p.V433E	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	8	0	0	5	8	61.54	-	-	-	A	113532664	T	A	113532664	3	1	763	1	0	0	0	0	1	0	0	0	4828	1696	59	5	1320	5	DTX1	12	113532664	Missense_Mutation	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09		113532664	20319231	39	66516										
NBEA	0	genome.wustl.edu	37	chr13	35517230	35517230	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gaggtcagcaacagggacatCgtggagacggtgctcaacct	14	10	2	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	13	35517230	35517230	C	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	silent	c.273	p.I91	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	17	0	0	19	22	53.66	-	-	-	T	35517230	C	T	35517230	2	4	763	1	0	0	0	0	0	0	0	1	10259	874	31	1		1	NBEA	13	35517230	Silent	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		35517230	79652648	40	66517										
HAUS4	0	genome.wustl.edu	37	chr14	23421871	23421871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cctctttactcaggttacaaGgaggaagttgtttgctgcac	10	9	2	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	14	23421871	23421871	G	A	SNP	HAUS4	ENST00000206474	human	ensembl	69_37n	-1	known	missense	c.77	p.P26L	1.000	NULL	NULL	-	no_errors	HAUS4	HGNC	ENSG00000092036	76	0	0	70	24	25.53	-	-	-	A	23421871	G	A	23421871	3	1	763	1	0	0	0	0	1	0	0	0	7019	1000	35	4	1046	4	HAUS4	14	23421871	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		23421871	83927669	41	66518										
FAM169B	0	genome.wustl.edu	37	chr15	98995099	98995099	+	Missense_Mutation	SNP	C	C	A													0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cgagcagctaacccccagggCctcgtcctctgggaatgtct							TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	15	98995099	98995099	C	A	SNP	FAM169B	ENST00000332908	human	ensembl	69_37n	-1	known	missense	c.325	p.A109S	0.936	NULL	NULL	-	no_errors	FAM169B	HGNC	ENSG00000185087	23	0	0	25	15	37.5	-	-	-	A	98995099	C	A	98995099	3	1	763	1	0	0	0	0	1	0	0	0	5528	739	26	4	265	4	FAM169B	15	98995099	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		98995099	3536293	42	66519	481	2								
FAM169B	0	genome.wustl.edu	37	chr15	98995100	98995100	+	Missense_Mutation	SNP	C	C	A													0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	gagcagctaacccccagggcCtcgtcctctgggaatgtctc							TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	15	98995100	98995100	C	A	SNP	FAM169B	ENST00000332908	human	ensembl	69_37n	-1	known	missense	c.324	p.E108D	0.299	NULL	NULL	-	no_errors	FAM169B	HGNC	ENSG00000185087	24	0	0	25	15	37.5	-	-	-	A	98995100	C	A	98995100	3	1	763	1	0	0	0	0	1	0	0	0	5528	680	24	4	266	4	FAM169B	15	98995100	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	1	98995100	3536292	43	66520	481	2								
ZKSCAN2	0	genome.wustl.edu	37	chr16	25266659	25266659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ctctggctggaagtctgccaCctcccacgctgctccaagtg	10	16	2	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	16	25266659	25266659	C	T	SNP	ZKSCAN2	ENST00000328086	human	ensembl	69_37n	-1	known	missense	c.454	p.V152M	0.013	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592	30	0	0	49	17	25.76	-	-	-	T	25266659	C	T	25266659	3	4	763	1	0	0	0	0	1	0	0	0	17783	507	18	4	2473	4	ZKSCAN2	16	25266659	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		25266659	65088094	44	66521										
ZFHX3	0	genome.wustl.edu	37	chr16	72984482	72984482	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ttgaggtgcacggggttgccGatggccacacacttgagcct	14	11	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	16	72984482	72984482	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	silent	c.3102	p.I1034	0.985	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	29	0	0	41	29	41.43	-	-	-	A	72984482	G	A	72984482	2	1	763	1	0	0	0	0	0	0	0	1	17730	1048	37	1		1	ZFHX3	16	72984482	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	47717823	72984482	17370271	45	66522										
ITGAE	0	genome.wustl.edu	37	chr17	3620003	3620003	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ttgaacaggatgaccagaatCacgatcaacaccagaagtcc	8	11	2	4			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	17	3620003	3620003	C	T	SNP	ITGAE	ENST00000263087	human	ensembl	69_37n	-1	known	silent	c.3423	p.V1141	0.192	prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAE	HGNC	ENSG00000083457	100	0	0	149	65	30.37	-	-	-	T	3620003	C	T	3620003	2	4	763	1	0	0	0	0	0	0	0	1	7939	813	29	2		2	ITGAE	17	3620003	Silent	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09		3620003	77575207	46	66523										
CIRBP	0	genome.wustl.edu	37	chr19	1272339	1272339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ggggtggttgctccccggccGcaggccgcgccctggtctgg	18	15	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	1272339	1272339	G	A	SNP	CIRBP	ENST00000444172	human	ensembl	69_37n	1	known	missense	c.632	p.R211H	0.000	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622	59	0	0	98	19	16.24	-	-	-	A	1272339	G	A	1272339	3	1	763	1	0	0	0	0	1	0	0	0	3462	1102	38	1		1	CIRBP	19	1272339	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		1272339	57856644	47	66524										
ILF3	0	genome.wustl.edu	37	chr19	10781755	10781755	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cagtccagaacatggtgtccCacacggagcgggcgctcaaa	12	13	1	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	10781755	10781755	C	G	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	missense	c.109	p.H37D	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	58	0	0	108	26	19.4	-	-	-	G	10781755	C	G	10781755	3	3	763	1	0	0	0	0	1	0	0	0	7766	594	21	4	115	4	ILF3	19	10781755	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	9509416	10781755	48347228	48	66525										
FCGBP	0	genome.wustl.edu	37	chr19	40376680	40376680	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	acgtggcctccagccgcctgGcaagcactcacgtaggcatg	12	15	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	40376680	40376680	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	nonsense	c.11742	p.C3914*	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	74	0	0	142	28	16.37	-	-	-	T	40376680	G	T	40376680	4	4	763	1	0	0	0	0	0	1	0	0	5824	1195	42	4	4527	4	FCGBP	19	40376680	Nonsense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	29594925	40376680	18752303	49	66526										
ZNF780B	0	genome.wustl.edu	37	chr19	40541078	40541078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aaccacgacgaaagaatttcCcacattccttacattcaaag	4	12	1	1			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	40541078	40541078	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	missense	c.1688	p.G563E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	120	0	0	164	21	11.29	-	-	-	T	40541078	C	T	40541078	3	4	763	1	0	0	0	0	1	0	0	0	18246	623	22	4	817	4	ZNF780B	19	40541078	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	164398	40541078	18587905	50	66527										
PSG6	0	genome.wustl.edu	37	chr19	43411997	43411997	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	tgatggtgatgtaaggcatgGgcagcttcgctgtgtggata	16	5	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	43411997	43411997	G	T	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.716	p.P239H	0.002	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	179	0	0	331	53	13.77	-	-	-	T	43411997	G	T	43411997	3	4	763	1	0	0	0	0	1	0	0	0	12739	1232	43	4	642	4	PSG6	19	43411997	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	2870919	43411997	15716986	51	66528										
MED25	0	genome.wustl.edu	37	chr19	50322461	50322461	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cagtacagcctcgtggtgttCaacacagtggactgcgctcc	11	13	1	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	50322461	50322461	C	G	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	missense	c.213	p.F71L	1.000	pfam_Mediator_Med25_VWA	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	47	0	0	80	27	25.23	-	-	-	G	50322461	C	G	50322461	3	3	763	1	0	0	0	0	1	0	0	0	9514	825	29	2	223	2	MED25	19	50322461	Missense_Mutation	SNP	C	TCGA-E2-A14Z-01A-11D-A10Y-09	6910464	50322461	8806522	52	66529										
CD33	0	genome.wustl.edu	37	chr19	51738413	51738413	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aaatcttttttgtctgcaggGaaacaagagaccagagcagg	11	7	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	19	51738413	51738413	G	T	SNP	CD33	ENST00000262262	human	ensembl	69_37n	1	known	silent	c.747	p.G249	0.008	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	141	0	0	133	36	21.3	-	-	-	T	51738413	G	T	51738413	2	4	763	1	0	0	0	0	0	0	0	1	3034	1188	41	2		2	CD33	19	51738413	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	1415952	51738413	7390570	53	66530										
NCOA5	0	genome.wustl.edu	37	chr20	44692114	44692114	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	ttgtctgccagcaggttgatGaggctctggatggctggagg	17	7	2	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	20	44692114	44692114	G	A	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	silent	c.1035	p.L345	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	59	0	0	103	33	24.26	-	-	-	A	44692114	G	A	44692114	2	1	763	1	0	0	0	0	0	0	0	1	10304	1277	45	2		2	NCOA5	20	44692114	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09		44692114	18333406	54	66531										
PRPF6	0	genome.wustl.edu	37	chr20	62658961	62658961	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	acttgttggttgcagttgaaGaagtgtccccactccacacc	9	12	0	2			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	20	62658961	62658961	G	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	silent	c.2211	p.K737	1.000	smart_TPR_repeat,smart_HAT,pfscan_TPR-contain_dom	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	45	0	0	104	29	21.8	-	-	-	A	62658961	G	A	62658961	2	1	763	1	0	0	0	0	0	0	0	1	12655	933	33	2		2	PRPF6	20	62658961	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	17966847	62658961	366559	55	66532										
CSF2RA	0	genome.wustl.edu	37	chrX	1407467	1407467	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	aatttgtctgcatgaaggagTcacatttgaggttcacgtga	11	6	3	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	X	1407467	1407467	T	A	SNP	CSF2RA	ENST00000417535	human	ensembl	69_37n	1	known	missense	c.275	p.V92D	0.044	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223	268	0	0	367	60	14.05	-	-	-	A	1407467	T	A	1407467	3	1	763	1	0	0	0	0	1	0	0	0	3966	1667	58	5	285	5	CSF2RA	23	1407467	Missense_Mutation	SNP	T	TCGA-E2-A14Z-01A-11D-A10Y-09		1407467	153863093	56	66533										
FRMPD4	0	genome.wustl.edu	37	chrX	12736883	12736883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	attgagagatggatgccatcGgctccccaagattaaggaaa	11	8	0	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	X	12736883	12736883	G	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	missense	c.3938	p.R1313L	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	43	0	0	68	32	32	-	-	-	T	12736883	G	T	12736883	3	4	763	1	0	0	0	0	1	0	0	0	6108	1116	39	3	4000	3	FRMPD4	23	12736883	Missense_Mutation	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	11329416	12736883	142533677	57	66534										
CCNB3	0	genome.wustl.edu	37	chrX	50089661	50089662	+	Frame_Shift_Ins	INS	-	-	A													0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cacccataggagcacaactcINSacctcgtgtggatgactttg							TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	X	50089661	50089662	-	A	INS	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	frame_shift_ins	c.3665_3666	p.P1223fs	0.933:0.937	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	104	0	0	189	22	10.43	-	-	-	A	50089662	-	A	50089661	7	5	763	1	0	1	1	0	0	0	0	0	2943	838	29	0	3695	0	CCNB3	23	50089661	Frame_Shift_Ins	INS	-	TCGA-E2-A14Z-01A-11D-A10Y-09	37352778	50089661	105180899	58	66535										
IL13RA2	0	genome.wustl.edu	37	chrX	114244201	114244201	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	catgaactctcccgagtaaaAgtaagatagactggcggcaa	10	9	1	3			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	X	114244201	114244201	A	C	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	silent	c.735	p.T245	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	102	0	0	96	44	31.21	-	-	-	C	114244201	A	C	114244201	2	2	763	1	0	0	0	0	0	0	0	1	7684	59	3	5		5	IL13RA2	23	114244201	Silent	SNP	A	TCGA-E2-A14Z-01A-11D-A10Y-09	64154540	114244201	41026359	59	66536										
SPANXD	0	genome.wustl.edu	37	chrX	140786506	140786506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.203389830508475	12	0.017380571906362	2.37502098371664	2.09228039041704	2.44099378881988	0.0063295493636051	0.103171654626763	7	cttaccatctcgttggcctcGttggaatcacaggggacgct	11	12	2	0			TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83eaaca-ced5-4630-abb5-ef34db888753	ef3b19d2-804c-4f88-bfc7-b0057d166e81	X	140786506	140786506	G	A	SNP	SPANXD	ENST00000370515	human	ensembl	69_37n	-1	known	silent	c.57	p.N19	0.016	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXD	HGNC	ENSG00000196406	220	0	0	281	92	24.66	-	-	-	A	140786506	G	A	140786506	2	1	763	1	0	0	0	0	0	0	0	1	15079	1136	40	1		1	SPANXD	23	140786506	Silent	SNP	G	TCGA-E2-A14Z-01A-11D-A10Y-09	26542305	140786506	14484054	60	66537										
TMCO4	0	genome.wustl.edu	37	chr1	20009551	20009551	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ggtcagtccagccccgtgctGgggccctgggtcttgcaggc	16	14	2	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	20009551	20009551	G	A	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	silent	c.1887	p.P629	0.912	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	43	0	0	44	9	16.98	-	-	-	A	20009551	G	A	20009551	2	1	764	1	0	0	0	0	0	0	0	1	16093	1335	47	4		4	TMCO4	1	20009551	Silent	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		20009551	229241070	1	66538										
ACOT11	0	genome.wustl.edu	37	chr1	55059698	55059698	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tggccaccttcgtggcccgcCgagagatcaccaaggtaact	11	14	1	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	55059698	55059698	C	G	SNP	ACOT11	ENST00000371316	human	ensembl	69_37n	1	known	missense	c.457	p.R153G	1.000	NULL	pfam_START_lipid-bd,pfam_Thioestr_supf,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT11	HGNC	ENSG00000162390	90	0	0	75	12	13.79	-	-	-	G	55059698	C	G	55059698	3	3	764	1	0	0	0	0	1	0	0	0	149	644	23	3	475	3	ACOT11	1	55059698	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	35050147	55059698	194190923	2	66539										
SLC35D1	0	genome.wustl.edu	37	chr1	67507959	67507959	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	aatacgcaatggccagggtgGgcagaatcatgaacagtgca	13	8	1	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	67507959	67507959	G	C	SNP	SLC35D1	ENST00000235345	human	ensembl	69_37n	-1	known	missense	c.689	p.P230R	1.000	pfam_DUF250	pfam_DUF250	-	no_errors	SLC35D1	HGNC	ENSG00000116704	478	1	0.21	283	129	31.23	-	-	-	C	67507959	G	C	67507959	3	2	764	1	0	0	0	0	1	0	0	0	14670	1232	43	4	398	4	SLC35D1	1	67507959	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	12448261	67507959	181742662	3	66540										
USP33	0	genome.wustl.edu	37	chr1	78194177	78194177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gaattaacattgttgtttcaTtattatcttcagaaaagcat	5	5	3	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	78194177	78194177	T	A	SNP	USP33	ENST00000357428	human	ensembl	69_37n	-1	known	missense	c.1031	p.N344I	0.999	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP33	HGNC	ENSG00000077254	317	0	0	272	50	15.53	-	-	-	A	78194177	T	A	78194177	3	1	764	1	0	0	0	0	1	0	0	0	17161	1493	52	5	1869	5	USP33	1	78194177	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	10686218	78194177	171056444	4	66541										
CHRNB2	0	genome.wustl.edu	37	chr1	154543672	154543672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	catcctttggcagtgctgacGgcatgtacgaggtgtccttc	12	11	0	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	154543672	154543672	G	A	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	1	known	missense	c.373	p.G125S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	74	0	0	57	43	43	-	-	-	A	154543672	G	A	154543672	3	1	764	1	0	0	0	0	1	0	0	0	3420	1116	39	1	391	1	CHRNB2	1	154543672	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	76349495	154543672	94706949	5	66542										
OR6Y1	0	genome.wustl.edu	37	chr1	158517488	158517488	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttggtcatgatgactgggtaGcgtagtggattacaaatggc	14	5	1	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	158517488	158517488	G	C	SNP	OR6Y1	ENST00000302617	human	ensembl	69_37n	-1	known	silent	c.408	p.R136	0.379	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6Y1	HGNC	ENSG00000197532	104	0	0	84	20	19.23	-	-	-	C	158517488	G	C	158517488	2	2	764	1	0	0	0	0	0	0	0	1	11286	958	34	4		4	OR6Y1	1	158517488	Silent	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	3973816	158517488	90733133	6	66543										
USH2A	0	genome.wustl.edu	37	chr1	215953312	215953312	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ctccagctcagatgcagagcCactgcacttagggctgtgat	11	12	1	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	215953312	215953312	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	silent	c.10812	p.V3604	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	307	0	0	208	117	36	-	-	-	T	215953312	C	T	215953312	2	4	764	1	0	0	0	0	0	0	0	1	17133	581	21	4		4	USH2A	1	215953312	Silent	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	57435824	215953312	33297309	7	66544										
AHCTF1	0	genome.wustl.edu	37	chr1	247014111	247014111	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	agttttggaggaaaccacgtCatcaacctggctgacattca	9	10	3	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	1	247014111	247014111	C	A	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.5224	p.D1742Y	0.030	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	241	0	0	212	33	13.47	-	-	-	A	247014111	C	A	247014111	3	1	764	1	0	0	0	0	1	0	0	0	408	826	29	2	1619	2	AHCTF1	1	247014111	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	31060799	247014111	2236510	8	66545										
KDM3A	0	genome.wustl.edu	37	chr2	86705821	86705821	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttcaaacaggcaattcaaacTcttttcaaagccagcctcaa	4	12	5	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	86705821	86705821	T	G	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	missense	c.2279	p.L760R	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	231	0	0	178	31	14.76	-	-	-	G	86705821	T	G	86705821	3	3	764	1	0	0	0	0	1	0	0	0	8180	1551	54	5	2333	5	KDM3A	2	86705821	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09		86705821	156493552	9	66546										
ACVR1C	0	genome.wustl.edu	37	chr2	158406760	158406760	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ctgcctcacgaaaccaagatCtttcatctctggaggagaat	8	11	4	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	158406760	158406760	C	A	SNP	ACVR1C	ENST00000243349	human	ensembl	69_37n	-1	known	missense	c.689	p.R230I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612	518	1	0.19	245	67	21.47	-	-	-	A	158406760	C	A	158406760	3	1	764	1	0	0	0	0	1	0	0	0	222	913	32	2	816	2	ACVR1C	2	158406760	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	71700939	158406760	84792613	10	66547										
CPS1	0	genome.wustl.edu	37	chr2	211471611	211471611	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ctcaatggaatactgcatcaTtgaagtgaatgccagactgt	9	8	2	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	211471611	211471611	T	G	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.2156	p.I719S	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	185	0	0	110	33	23.08	-	-	-	G	211471611	T	G	211471611	3	3	764	1	0	0	0	0	1	0	0	0	3853	1493	52	5	2230	5	CPS1	2	211471611	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	53064851	211471611	31727762	11	66548										
ERBB4	0	genome.wustl.edu	37	chr2	212543900	212543900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	acagatggttgcacaccattCcttcagcagctgtgaaacac	8	12	1	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	212543900	212543900	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.1499	p.G500E	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	181	0	0	100	23	18.7	-	-	-	T	212543900	C	T	212543900	3	4	764	1	0	0	0	0	1	0	0	0	5246	855	30	2	2491	2	ERBB4	2	212543900	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	1072289	212543900	30655473	12	66549										
SPEG	0	genome.wustl.edu	37	chr2	220354392	220354392	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gacactgggaccccgatcccAgcctccactcctcaaggggt	10	17	1	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	2	220354392	220354392	A	C	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	silent	c.8652	p.P2884	0.971	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	79	0	0	51	12	19.05	-	-	-	C	220354392	A	C	220354392	2	2	764	1	0	0	0	0	0	0	0	1	15127	175	7	5		5	SPEG	2	220354392	Silent	SNP	A	TCGA-E2-A150-01A-11D-A12B-09	7810492	220354392	22844981	13	66550										
SULT1E1	0	genome.wustl.edu	37	chr4	70715248	70715248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gaaataataaaaggaaacagCcacatcctttgcattccggc	7	10	0	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	70715248	70715248	C	T	SNP	SULT1E1	ENST00000226444	human	ensembl	69_37n	-1	known	missense	c.403	p.A135T	0.994	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1E1	HGNC	ENSG00000109193	133	0	0	73	21	22.34	-	-	-	T	70715248	C	T	70715248	3	4	764	1	0	0	0	0	1	0	0	0	15471	739	26	4	497	4	SULT1E1	4	70715248	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09		70715248	120439028	14	66551										
GRID2	0	genome.wustl.edu	37	chr4	94547528	94547528	+	Missense_Mutation	SNP	C	C	G													0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttggaaatactgttgctgatCggggatatggaattgcatta							TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	94547528	94547528	C	G	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.2302	p.R768G	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	486	0	0	293	68	18.78	-	-	-	G	94547528	C	G	94547528	3	3	764	1	0	0	0	0	1	0	0	0	6823	875	31	3	2356	3	GRID2	4	94547528	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	23832280	94547528	96606748	15	66552	482	2								
GRID2	0	genome.wustl.edu	37	chr4	94547529	94547529	+	Missense_Mutation	SNP	G	G	A													0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tggaaatactgttgctgatcGgggatatggaattgcattac							TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	94547529	94547529	G	A	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.2303	p.R768Q	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	486	0	0	290	68	18.99	-	-	-	A	94547529	G	A	94547529	3	1	764	1	0	0	0	0	1	0	0	0	6823	1116	39	1	2357	1	GRID2	4	94547529	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	1	94547529	96606747	16	66553	482	2								
C4orf21	0	genome.wustl.edu	37	chr4	113484412	113484412	+	Frame_Shift_Del	DEL	G	G	-													0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gctcaaagtctagggtttttGaaaccacccaaagatcatct							TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	4	113484412	113484412	G	-	DEL	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	frame_shift_del	c.4457	p.S1486fs	1.000	NULL	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	172	0	0	87	16	15.24	-	-	-	-	113484412	G	-	113484412	7	5	764	1	0	1	0	1	0	0	0	0	2275	1294	45	0	1905	0	C4orf21	4	113484412	Frame_Shift_Del	DEL	G	TCGA-E2-A150-01A-11D-A12B-09	18936883	113484412	77669864	17	66554										
ITGA1	0	genome.wustl.edu	37	chr5	52216261	52216261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tcaaaggaacatcacagttcGaaaatcagaatgcactaagc	7	9	3	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	5	52216261	52216261	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.2255	p.R752Q	0.265	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	320	0	0	146	84	36.52	-	-	-	A	52216261	G	A	52216261	3	1	764	1	0	0	0	0	1	0	0	0	7926	1058	37	1	2321	1	ITGA1	5	52216261	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		52216261	128698999	18	66555										
HAVCR1	0	genome.wustl.edu	37	chr5	156464344	156464344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttcctttagtggtattggccGtcagtagactatgttctagg	11	7	2	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	5	156464344	156464344	G	A	SNP	HAVCR1	ENST00000425854	human	ensembl	69_37n	-1	known	missense	c.866	p.T289M	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	HAVCR1	HGNC	ENSG00000113249	274	0	0	120	16	11.76	-	-	-	A	156464344	G	A	156464344	3	1	764	1	0	0	0	0	1	0	0	0	7024	1145	40	1	240	1	HAVCR1	5	156464344	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	104248083	156464344	24450916	19	66556										
PPP1R10	0	genome.wustl.edu	37	chr6	30571347	30571347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tcccataagattggccagaaCtggaggcaacttggagcctc	11	11	0	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	30571347	30571347	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	69_37n	-1	known	missense	c.1669	p.V557I	0.999	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569	36	0	0	36	8	18.18	-	-	-	T	30571347	C	T	30571347	3	4	764	1	0	0	0	0	1	0	0	0	12429	565	20	4	1173	4	PPP1R10	6	30571347	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09		30571347	140543720	20	66557										
EYS	0	genome.wustl.edu	37	chr6	65301142	65301142	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	agcagcctgtgatttgatgtTtgtgagtctctggttgcttg	13	6	1	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	65301142	65301142	T	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.4618	p.N1540H	1.000	NULL	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	123	0	0	78	45	36.29	-	-	-	G	65301142	T	G	65301142	3	3	764	1	0	0	0	0	1	0	0	0	5369	1841	64	5	4733	5	EYS	6	65301142	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	34729795	65301142	105813925	21	66558										
RWDD2A	0	genome.wustl.edu	37	chr6	83905471	83905471	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tgatccaggtgagctctgtgTatgtgcagcaatccagtggc	13	9	1	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	6	83905471	83905471	T	A	SNP	RWDD2A	ENST00000369724	human	ensembl	69_37n	1	known	missense	c.359	p.V120E	0.812	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2A	HGNC	ENSG00000013392	235	0	0	153	83	35.17	-	-	-	A	83905471	T	A	83905471	3	1	764	1	0	0	0	0	1	0	0	0	13841	1638	57	5	365	5	RWDD2A	6	83905471	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	18604329	83905471	87209596	22	66559										
BRAF	0	genome.wustl.edu	37	chr7	140476796	140476796	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tgatatggagatggtgatacAagctggagccctcacaccac	11	10	1	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	7	140476796	140476796	A	G	SNP	BRAF	ENST00000288602	human	ensembl	69_37n	-1	known	missense	c.1610	p.L537S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	167	0	0	112	29	20.42	-	-	-	G	140476796	A	G	140476796	3	3	764	1	0	0	0	0	1	0	0	0	1504	131	5	5	714	5	BRAF	7	140476796	Missense_Mutation	SNP	A	TCGA-E2-A150-01A-11D-A12B-09		140476796	18661867	23	66560										
RB1CC1	0	genome.wustl.edu	37	chr8	53569190	53569190	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttcatcagtttctgcttcctTcaacgcaagttcaacctcta	4	13	6	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	8	53569190	53569190	T	A	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	nonsense	c.3199	p.K1067*	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	267	0	0	206	87	29.59	-	-	-	A	53569190	T	A	53569190	4	1	764	1	0	0	0	0	0	1	0	0	13182	1792	62	5	1625	5	RB1CC1	8	53569190	Nonsense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09		53569190	92794832	24	66561										
CACNA1B	0	genome.wustl.edu	37	chr9	140938304	140938304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	cgtgatgaggagcggcccccGgcctatcgtcccatacagct	12	15	0	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	9	140938304	140938304	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.3368	p.R1123Q	0.998	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	363	0	0	117	122	50.83	-	-	-	A	140938304	G	A	140938304	3	1	764	1	0	0	0	0	1	0	0	0	2564	1116	39	1	3447	1	CACNA1B	9	140938304	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		140938304	275127	25	66562										
SFMBT2	0	genome.wustl.edu	37	chr10	7244480	7244480	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	actgcaatctttctcttcttTtgtgctgtagaaaaggcaaa	7	8	3	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	7244480	7244480	T	G	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.1449	p.Q483H	1.000	pfam_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	333	2	0.6	327	87	21.01	-	-	-	G	7244480	T	G	7244480	3	3	764	1	0	0	0	0	1	0	0	0	14246	1838	64	5	1271	5	SFMBT2	10	7244480	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09		7244480	128290267	26	66563										
ZEB1	0	genome.wustl.edu	37	chr10	31810768	31810768	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ctagctgccaataagcaaacGattctgattccccaggtggc	9	12	1	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	31810768	31810768	G	A	SNP	ZEB1	ENST00000361642	human	ensembl	69_37n	1	known	silent	c.2508	p.T836	0.878	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	158	0	0	165	24	12.7	-	-	-	A	31810768	G	A	31810768	2	1	764	1	0	0	0	0	0	0	0	1	17719	1045	37	1		1	ZEB1	10	31810768	Silent	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	24566288	31810768	103723979	27	66564										
PCDH15	0	genome.wustl.edu	37	chr10	55944938	55944938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttccctgtccactggttgaaGtaaggtgaggtagcgagtaa	13	7	0	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	55944938	55944938	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.1396	p.L466F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	374	0	0	249	53	17.55	-	-	-	A	55944938	G	A	55944938	3	1	764	1	0	0	0	0	1	0	0	0	11584	1029	36	4	6178	4	PCDH15	10	55944938	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	24134170	55944938	79589809	28	66565										
ZNF365	0	genome.wustl.edu	37	chr10	64425930	64425930	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	aagcaggaatatcagccttcTtacactaggacaactccaaa	6	11	2	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	10	64425930	64425930	T	C	SNP	ZNF365	ENST00000410046	human	ensembl	69_37n	1	known	missense	c.1262	p.L421P	0.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311	263	0	0	227	35	13.36	-	-	-	C	64425930	T	C	64425930	3	2	764	1	0	0	0	0	1	0	0	0	17965	1609	56	5	2020	5	ZNF365	10	64425930	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	8480992	64425930	71108817	29	66566										
BCAT1	0	genome.wustl.edu	37	chr12	24970952	24970952	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tattttccattcaggatagcAcaattgtccagtcgctctct	6	11	2	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	12	24970952	24970952	A	G	SNP	BCAT1	ENST00000261192	human	ensembl	69_37n	-1	known	missense	c.1151	p.V384A	0.000	superfamily_Aminotrans_IV,pirsf_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982	418	0	0	407	51	11.11	-	-	-	G	24970952	A	G	24970952	3	3	764	1	0	0	0	0	1	0	0	0	1358	159	6	5	13	5	BCAT1	12	24970952	Missense_Mutation	SNP	A	TCGA-E2-A150-01A-11D-A12B-09		24970952	108880943	30	66567										
DNAH3	0	genome.wustl.edu	37	chr16	20955961	20955961	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	tgggtgggctgtgatggggaGattcctgagatagtcgatat	17	4	0	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	16	20955961	20955961	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.11368	p.L3790I	0.648	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	306	0	0	181	59	24.58	-	-	-	T	20955961	G	T	20955961	3	4	764	1	0	0	0	0	1	0	0	0	4639	942	33	2	1001	2	DNAH3	16	20955961	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		20955961	69398792	31	66568										
TP53	0	genome.wustl.edu	37	chr17	7578402	7578402	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gagcagcgctcatggtggggGcagcgcctcacaacctccgt	14	14	2	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	7578402	7578402	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.528	p.C176*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	104	0	0	41	43	51.19	-	-	-	T	7578402	G	T	7578402	4	4	764	1	0	0	0	0	0	1	0	0	16477	1195	42	4	770	4	TP53	17	7578402	Nonsense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		7578402	73616808	32	66569										
DNAH9	0	genome.wustl.edu	37	chr17	11522985	11522985	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	aagagtttcaggacagaaggGagaatctccacacttacttc	9	9	2	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	11522985	11522985	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	nonsense	c.1237	p.E413*	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	145	0	0	89	23	20.54	-	-	-	T	11522985	G	T	11522985	4	4	764	1	0	0	0	0	0	1	0	0	4643	1175	41	2	1259	2	DNAH9	17	11522985	Nonsense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	3944583	11522985	69672225	33	66570										
SCPEP1	0	genome.wustl.edu	37	chr17	55058560	55058560	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	caccaactcctgcaagaactTctcagaactgcccctggtca	6	16	2	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	17	55058560	55058560	T	A	SNP	SCPEP1	ENST00000262288	human	ensembl	69_37n	1	known	missense	c.194	p.F65Y	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064	203	0	0	45	70	60.87	-	-	-	A	55058560	T	A	55058560	3	1	764	1	0	0	0	0	1	0	0	0	14023	1783	62	5	200	5	SCPEP1	17	55058560	Missense_Mutation	SNP	T	TCGA-E2-A150-01A-11D-A12B-09	43535575	55058560	26136650	34	66571										
CLUL1	0	genome.wustl.edu	37	chr18	618062	618062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gttgaaagacagtcactgcgCacccacttggaaggacaaaa	10	10	1	2			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	18	618062	618062	C	T	SNP	CLUL1	ENST00000338387	human	ensembl	69_37n	1	known	missense	c.62	p.A21V	0.996	pfam_Clusterin-like	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	306	0	0	212	44	17.19	-	-	-	T	618062	C	T	618062	3	4	764	1	0	0	0	0	1	0	0	0	3600	710	25	4	64	4	CLUL1	18	618062	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09		618062	77459186	35	66572										
SETBP1	0	genome.wustl.edu	37	chr18	42643576	42643576	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	cagcccccacagcagtcgccCccgcagcagccccttcccca	7	24	0	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	18	42643576	42643576	C	G	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	silent	c.4704	p.P1568	0.950	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	20	0	0	6	6	50	-	-	-	G	42643576	C	G	42643576	2	3	764	1	0	0	0	0	0	0	0	1	14217	610	22	4		4	SETBP1	18	42643576	Silent	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	42025514	42643576	35433672	36	66573										
NCCRP1	0	genome.wustl.edu	37	chr19	39690990	39690990	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	ttgactccgcctgcaggttcGaggacagccggctggatgcg	15	12	0	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	39690990	39690990	G	T	SNP	NCCRP1	ENST00000339852	human	ensembl	69_37n	1	known	nonsense	c.553	p.E185*	0.988	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	-	no_errors	NCCRP1	HGNC	ENSG00000188505	35	0	0	21	5	19.23	-	-	-	T	39690990	G	T	39690990	4	4	764	1	0	0	0	0	0	1	0	0	10285	1059	37	3	571	3	NCCRP1	19	39690990	Nonsense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09		39690990	19437993	37	66574										
PSMC4	0	genome.wustl.edu	37	chr19	40480708	40480708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gctgtgggaagaccatgttgGcaaaggcggtggcacatcac	15	9	1	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	40480708	40480708	G	A	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.646	p.A216T	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	131	0	0	84	24	22.22	-	-	-	A	40480708	G	A	40480708	3	1	764	1	0	0	0	0	1	0	0	0	12769	1203	42	4	668	4	PSMC4	19	40480708	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	789718	40480708	18648275	38	66575										
LIG1	0	genome.wustl.edu	37	chr19	48620916	48620916	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	aggccccgcgcagcagggtaGatgggagagagggagaggtc	20	8	0	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	19	48620916	48620916	G	C	SNP	LIG1	ENST00000263274	human	ensembl	69_37n	-1	known	missense	c.2562	p.I854M	1.000	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold-like,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	34	0	0	22	8	26.67	-	-	-	C	48620916	G	C	48620916	3	2	764	1	0	0	0	0	1	0	0	0	8836	932	33	2	209	2	LIG1	19	48620916	Missense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	8140208	48620916	10508067	39	66576										
ZNF217	0	genome.wustl.edu	37	chr20	52192498	52192498	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	aggtcatagcctcttctgtaAttggccccgggctggtcaac	11	12	4	0			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	20	52192498	52192498	A	G	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	silent	c.2805	p.N935	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	119	0	0	105	15	12.5	-	-	-	G	52192498	A	G	52192498	2	3	764	1	0	0	0	0	0	0	0	1	17868	98	4	5		5	ZNF217	20	52192498	Silent	SNP	A	TCGA-E2-A150-01A-11D-A12B-09		52192498	10833022	40	66577										
BCAS1	0	genome.wustl.edu	37	chr20	52570137	52570137	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	gcttgttcatctcggctgctGacttcttgtccttcgaggag	11	11	3	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	20	52570137	52570137	G	T	SNP	BCAS1	ENST00000371440	human	ensembl	69_37n	-1	known	nonsense	c.1541	p.S514*	0.006	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787	704	1	0.14	446	219	32.93	-	-	-	T	52570137	G	T	52570137	4	4	764	1	0	0	0	0	0	1	0	0	1354	1294	45	2	248	2	BCAS1	20	52570137	Nonsense_Mutation	SNP	G	TCGA-E2-A150-01A-11D-A12B-09	377639	52570137	10455383	41	66578										
CACNA1F	0	genome.wustl.edu	37	chrX	49065116	49065116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	cagaaatcccggagccccggCgagctgagggctgggagacc	16	13	0	3			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	X	49065116	49065116	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.5015	p.R1672H	0.416	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	128	0	0	67	25	26.88	-	-	-	T	49065116	C	T	49065116	3	4	764	1	0	0	0	0	1	0	0	0	2568	768	27	1	942	1	CACNA1F	23	49065116	Missense_Mutation	SNP	C	TCGA-E2-A150-01A-11D-A12B-09		49065116	106205444	42	66579										
MORF4L2	0	genome.wustl.edu	37	chrX	102931122	102931122	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0238095238095238	1	1	0.373684210526316	1.42	0	1	1	0	cggtggtactcagcagaagcCactttgtaatcactggcagt	11	10	2	1			TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	446064de-ff64-4113-9080-360e5bf6d5e4	17e424ec-2364-4fa2-ae06-9fa4a409fe3e	X	102931122	102931122	C	A	SNP	MORF4L2	ENST00000360458	human	ensembl	69_37n	-1	known	silent	c.834	p.V278	1.000	NULL	pfam_MRG,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562	203	0	0	77	18	18.95	-	-	-	A	102931122	C	A	102931122	2	1	764	1	0	0	0	0	0	0	0	1	9779	581	21	4		4	MORF4L2	23	102931122	Silent	SNP	C	TCGA-E2-A150-01A-11D-A12B-09	53866006	102931122	52339438	43	66580										
CA6	0	genome.wustl.edu	37	chr1	9022689	9022689	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttattacagcaacttcatttCtcatctggccaacatcaagt	4	11	4	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	9022689	9022689	C	T	SNP	CA6	ENST00000377443	human	ensembl	69_37n	1	known	missense	c.545	p.S182F	0.085	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686	389	1	0.26	282	68	19.43	-	-	-	T	9022689	C	T	9022689	3	4	765	1	0	0	0	0	1	0	0	0	2546	913	32	2	563	2	CA6	1	9022689	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		9022689	240227932	1	66581										
EIF4G3	0	genome.wustl.edu	37	chr1	21175934	21175934	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	atcattaatgtgtagaaattCatcaatgatagatttcgact	6	5	3	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	21175934	21175934	C	T	SNP	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	missense	c.3712	p.E1238K	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	365	0	0	237	71	23.05	-	-	-	T	21175934	C	T	21175934	3	4	765	1	0	0	0	0	1	0	0	0	5075	835	29	2	1099	2	EIF4G3	1	21175934	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	12153245	21175934	228074687	2	66582										
PTPRU	0	genome.wustl.edu	37	chr1	29587268	29587268	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tggcgcgcgggccctgggctGaggtgcacgccgtcagcctg	18	14	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	29587268	29587268	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	1	known	missense	c.997	p.E333K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	60	0	0	77	19	19.79	-	-	-	A	29587268	G	A	29587268	3	1	765	1	0	0	0	0	1	0	0	0	12896	1291	45	2	1023	2	PTPRU	1	29587268	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	8411334	29587268	219663353	3	66583										
SNX7	0	genome.wustl.edu	37	chr1	99150448	99150448	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttttatttcttaggatgcctCattgatggacatgaactcct	7	8	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	99150448	99150448	C	G	SNP	SNX7	ENST00000306121	human	ensembl	69_37n	1	known	nonsense	c.188	p.S63*	0.996	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	348	0	0	181	41	18.47	-	-	-	G	99150448	C	G	99150448	4	3	765	1	0	0	0	0	0	1	0	0	14996	838	29	2	194	2	SNX7	1	99150448	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	69563180	99150448	150100173	4	66584										
GPSM2	0	genome.wustl.edu	37	chr1	109445764	109445764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttagaattggtgaaggaagaGcatgttggagcttaggaaat	14	2	0	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	109445764	109445764	G	A	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.970	p.A324T	1.000	pfam_TPR-4,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	513	0	0	237	142	37.47	-	-	-	A	109445764	G	A	109445764	3	1	765	1	0	0	0	0	1	0	0	0	6786	971	34	4	1000	4	GPSM2	1	109445764	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	10295316	109445764	139804857	5	66585										
RBM8A	0	genome.wustl.edu	37	chr1	145508273	145508273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gcaggatggcgatgaacccgGaccacaacgctgtgagtaat	13	10	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	145508273	145508273	G	T	SNP	RBM8A	ENST00000330165	human	ensembl	69_37n	1	known	missense	c.194	p.G65V	1.000	prints_RNA-bd_8	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom,prints_RNA-bd_8	-	no_errors	RBM8A	HGNC	ENSG00000131795	244	0	0	178	90	33.58	-	-	-	T	145508273	G	T	145508273	3	4	765	1	0	0	0	0	1	0	0	0	13229	1174	41	2	204	2	RBM8A	1	145508273	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	36062509	145508273	103742348	6	66586										
OTUD7B	0	genome.wustl.edu	37	chr1	149937782	149937782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tctgagaggtgggatccacaCtcacccaccagttcaaacgc	9	14	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	149937782	149937782	C	T	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.524	p.S175N	0.986	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	125	0	0	137	23	14.37	-	-	-	T	149937782	C	T	149937782	3	4	765	1	0	0	0	0	1	0	0	0	11392	565	20	4	2039	4	OTUD7B	1	149937782	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	4429509	149937782	99312839	7	66587										
SPRR2F	0	genome.wustl.edu	37	chr1	153085068	153085068	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acatttctgctggcactgctGaggtgggcaggactgtggac	15	9	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	153085068	153085068	G	A	SNP	SPRR2F	ENST00000468739	human	ensembl	69_37n	-1	known	nonsense	c.142	p.Q48*	0.007	NULL	NULL	-	no_errors	SPRR2F	HGNC	ENSG00000244094	541	0	0	498	265	34.69	-	-	-	A	153085068	G	A	153085068	4	1	765	1	0	0	0	0	0	1	0	0	15192	1299	45	2	80	2	SPRR2F	1	153085068	Nonsense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	3147286	153085068	96165553	8	66588										
THBS3	0	genome.wustl.edu	37	chr1	155165801	155165801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tgcatcgatactggagattgGaccaaattatgttttcttgg	10	6	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	155165801	155165801	G	C	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.2789	p.S930C	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	299	0	0	277	50	15.29	-	-	-	C	155165801	G	C	155165801	3	2	765	1	0	0	0	0	1	0	0	0	15950	1174	41	2	89	2	THBS3	1	155165801	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	2080733	155165801	94084820	9	66589										
GPATCH4	0	genome.wustl.edu	37	chr1	156567909	156567909	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	aaaggctccttatctgtactCcatcctgtagagaattatca	6	10	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	156567909	156567909	C	A	SNP	GPATCH4	ENST00000438976	human	ensembl	69_37n	-1	known	missense	c.266	p.G89V	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818	415	0	0	284	125	30.49	-	-	-	A	156567909	C	A	156567909	3	1	765	1	0	0	0	0	1	0	0	0	6643	855	30	2	877	2	GPATCH4	1	156567909	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	1402108	156567909	92682712	10	66590										
MNDA	0	genome.wustl.edu	37	chr1	158812198	158812198	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gttaacaatcttcgaaaagaGaagtcaaaaggtaatagaga	9	4	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	158812198	158812198	G	C	SNP	MNDA	ENST00000368141	human	ensembl	69_37n	1	known	missense	c.255	p.E85D	0.001	pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	206	0	0	136	27	16.56	-	-	-	C	158812198	G	C	158812198	3	2	765	1	0	0	0	0	1	0	0	0	9748	933	33	2	257	2	MNDA	1	158812198	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	2244289	158812198	90438423	11	66591										
PAPPA2	0	genome.wustl.edu	37	chr1	176564678	176564678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gacgacggagactgctgcgaCccccaggtggctgatgtgcg	16	12	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	176564678	176564678	C	A	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.1938	p.D646E	1.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	148	0	0	162	37	18.41	-	-	-	A	176564678	C	A	176564678	3	1	765	1	0	0	0	0	1	0	0	0	11506	506	18	4	1944	4	PAPPA2	1	176564678	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	17752480	176564678	72685943	12	66592										
CD55	0	genome.wustl.edu	37	chr1	207498997	207498997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccctaatccgggagaaatacGaaatggtcagattgatgtac	10	8	1	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	207498997	207498997	G	A	SNP	CD55	ENST00000314754	human	ensembl	69_37n	1	known	missense	c.509	p.R170Q	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD55	HGNC	ENSG00000196352	570	0	0	426	74	14.8	-	-	-	A	207498997	G	A	207498997	3	1	765	1	0	0	0	0	1	0	0	0	3053	1058	37	1	523	1	CD55	1	207498997	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	30934319	207498997	41751624	13	66593										
PGBD5	0	genome.wustl.edu	37	chr1	230503782	230503782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	accacaccccacataggcagGaatgaatactccctggaagg	9	13	0	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	230503782	230503782	G	C	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	missense	c.233	p.S78C	0.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	498	0	0	533	82	13.29	-	-	-	C	230503782	G	C	230503782	3	2	765	1	0	0	0	0	1	0	0	0	11858	1189	41	2		2	PGBD5	1	230503782	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	23004785	230503782	18746839	14	66594										
OR2T34	0	genome.wustl.edu	37	chr1	248737415	248737415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agctggagatgaccatgatgGgggtgagaagcatgaggatg	18	4	0	5			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	1	248737415	248737415	G	T	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.644	p.P215H	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	419	0	0	473	92	16.28	-	-	-	T	248737415	G	T	248737415	3	4	765	1	0	0	0	0	1	0	0	0	11098	1232	43	4	316	4	OR2T34	1	248737415	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	18233633	248737415	513206	15	66595										
TAF1B	0	genome.wustl.edu	37	chr2	10050972	10050972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tggcaaaaactgttaagtacGatgtacaagctgtagctatc	9	7	0	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	2	10050972	10050972	G	A	SNP	TAF1B	ENST00000263663	human	ensembl	69_37n	1	known	missense	c.1063	p.D355N	1.000	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	453	0	0	265	55	17.19	-	-	-	A	10050972	G	A	10050972	3	1	765	1	0	0	0	0	1	0	0	0	15612	1058	37	1	1101	1	TAF1B	2	10050972	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		10050972	233148401	16	66596										
TACR1	0	genome.wustl.edu	37	chr2	75280858	75280858	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agcagggggaggaagtagatCagcacagtcacacagatgtg	15	7	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	2	75280858	75280858	C	A	SNP	TACR1	ENST00000305249	human	ensembl	69_37n	-1	known	silent	c.609	p.L203	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	251	0	0	156	40	20.41	-	-	-	A	75280858	C	A	75280858	2	1	765	1	0	0	0	0	0	0	0	1	15597	813	29	2		2	TACR1	2	75280858	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	65229886	75280858	167918515	17	66597										
THSD7B	0	genome.wustl.edu	37	chr2	137814238	137814238	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	aagtcaagcctcggactgcaGagtgtgtgacggctcagcat	13	10	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	2	137814238	137814238	G	C	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.388	p.E130Q	0.547	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	172	0	0	115	39	25.32	-	-	-	C	137814238	G	C	137814238	3	2	765	1	0	0	0	0	1	0	0	0	15975	943	33	2	301	2	THSD7B	2	137814238	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	62533380	137814238	105385135	18	66598										
RIF1	0	genome.wustl.edu	37	chr2	152322549	152322549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gcagacacgctgtgtctggtCtcctttggcttctccgtcta	10	13	4	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	2	152322549	152322549	C	T	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.6515	p.S2172F	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	132	0	0	74	20	21.28	-	-	-	T	152322549	C	T	152322549	3	4	765	1	0	0	0	0	1	0	0	0	13443	913	32	2	6629	2	RIF1	2	152322549	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	14508311	152322549	90876824	19	66599										
C2orf83	0	genome.wustl.edu	37	chr2	228476365	228476365	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ggctctagtttctcagatggActtaatactgaaaaaagaaa	8	6	2	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	2	228476365	228476365	A	G	SNP	C2orf83	ENST00000264387	human	ensembl	69_37n	-1	known	silent	c.198	p.S66	0.382	NULL	pfam_Folate_carrier	-	no_errors	C2orf83	HGNC	ENSG00000042304	207	0	0	156	35	18.32	-	-	-	G	228476365	A	G	228476365	2	3	765	1	0	0	0	0	0	0	0	1	2218	272	10	5		5	C2orf83	2	228476365	Silent	SNP	A	TCGA-E2-A152-01A-11D-A12B-09	76153816	228476365	14723008	20	66600										
MAP4	0	genome.wustl.edu	37	chr3	47951254	47951254	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cgcaccactgtgcactgactCagattctcctatcacatgcc	6	16	3	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	47951254	47951254	C	A	SNP	MAP4	ENST00000264724	human	ensembl	69_37n	-1	known	nonsense	c.478	p.E160*	0.074	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	219	0	0	58	76	56.72	-	-	-	A	47951254	C	A	47951254	4	1	765	1	0	0	0	0	0	1	0	0	9329	835	29	2	2384	2	MAP4	3	47951254	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		47951254	150071176	21	66601										
CDHR4	0	genome.wustl.edu	37	chr3	49831147	49831147	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gtccaaaggtcccaggaggtGaacttcccctagagggggag	15	10	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	49831147	49831147	G	A	SNP	CDHR4	ENST00000412678	human	ensembl	69_37n	-1	known	missense	c.1492	p.H498Y	0.032	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492	277	0	0	161	63	28	-	-	-	A	49831147	G	A	49831147	3	1	765	1	0	0	0	0	1	0	0	0	3150	1290	45	2	906	2	CDHR4	3	49831147	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	1879893	49831147	148191283	22	66602										
NSUN3	0	genome.wustl.edu	37	chr3	93783283	93783283	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tttttcttatcgtcatagctGaaagcaaaatcagaggggaa	9	6	3	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	93783283	93783283	G	C	SNP	NSUN3	ENST00000314622	human	ensembl	69_37n	1	known	silent	c.15	p.L5	1.000	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694	370	0	0	252	37	12.76	-	-	-	C	93783283	G	C	93783283	2	2	765	1	0	0	0	0	0	0	0	1	10752	1277	45	2		2	NSUN3	3	93783283	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	43952136	93783283	104239147	23	66603										
PLA1A	0	genome.wustl.edu	37	chr3	119327722	119327722	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tggatttatgggtctacaggAgtctacttctcagctgtgaa	11	7	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	119327722	119327722	A	T	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	1	known	silent	c.381	p.G127	0.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	550	0	0	329	80	19.56	-	-	-	T	119327722	A	T	119327722	2	4	765	1	0	0	0	0	0	0	0	1	12062	291	11	5		5	PLA1A	3	119327722	Silent	SNP	A	TCGA-E2-A152-01A-11D-A12B-09	25544439	119327722	78694708	24	66604										
MYLK	0	genome.wustl.edu	37	chr3	123419644	123419644	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gaagtccagctgctccacctCctgctggcggatcgcctcct	10	17	0	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	123419644	123419644	C	G	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.2671	p.E891Q	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	101	0	0	104	30	22.22	-	-	-	G	123419644	C	G	123419644	3	3	765	1	0	0	0	0	1	0	0	0	10128	864	30	2	3141	2	MYLK	3	123419644	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	4091922	123419644	74602786	25	66605										
TSC22D2	0	genome.wustl.edu	37	chr3	150127372	150127372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttaacaatgttggggatgcgGagactcccgggaccgtctcc	13	11	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	150127372	150127372	G	C	SNP	TSC22D2	ENST00000361875	human	ensembl	69_37n	1	known	missense	c.235	p.E79Q	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428	30	0	0	28	13	31.71	-	-	-	C	150127372	G	C	150127372	3	2	765	1	0	0	0	0	1	0	0	0	16704	1175	41	2	237	2	TSC22D2	3	150127372	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	26707728	150127372	47895058	26	66606										
PIK3CA	0	genome.wustl.edu	37	chr3	178941973	178941973	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gctcatcaactaggaaacctCaggtactttcttgggggttt	10	9	4	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	3	178941973	178941973	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	silent	c.2292	p.L764	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	439	0	0	309	55	15.11	-	-	-	T	178941973	C	T	178941973	2	4	765	1	0	0	0	0	0	0	0	1	11987	813	29	2		2	PIK3CA	3	178941973	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	28814601	178941973	19080457	27	66607										
UGT2B10	0	genome.wustl.edu	37	chr4	69681927	69681927	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cttcagcttccattctttttGatcccaacgactcatccact	3	15	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	69681927	69681927	G	C	SNP	UGT2B10	ENST00000265403	human	ensembl	69_37n	1	known	missense	c.190	p.D64H	0.011	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B10	HGNC	ENSG00000109181	155	0	0	110	23	17.29	-	-	-	C	69681927	G	C	69681927	3	2	765	1	0	0	0	0	1	0	0	0	17053	1290	45	2	192	2	UGT2B10	4	69681927	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		69681927	121472349	28	66608										
CCDC158	0	genome.wustl.edu	37	chr4	77304840	77304840	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttggtgttgttgcagaagtaGttctattttgttctgtgatt	11	3	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	77304840	77304840	G	C	SNP	CCDC158	ENST00000388914	human	ensembl	69_37n	-1	known	missense	c.778	p.L260V	0.955	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749	1026	0	0	816	118	12.63	-	-	-	C	77304840	G	C	77304840	3	2	765	1	0	0	0	0	1	0	0	0	2816	1020	36	4	2639	4	CCDC158	4	77304840	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	7622913	77304840	113849436	29	66609										
SHROOM3	0	genome.wustl.edu	37	chr4	77476816	77476816	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccaaactgcaggctggggatGaggttgtgcacatcaatgag	14	8	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	77476816	77476816	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.223	p.E75K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	226	0	0	156	86	35.39	-	-	-	A	77476816	G	A	77476816	3	1	765	1	0	0	0	0	1	0	0	0	14384	1291	45	2	229	2	SHROOM3	4	77476816	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	171976	77476816	113677460	30	66610										
SHROOM3	0	genome.wustl.edu	37	chr4	77676338	77676338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gtgaggatcccgaggggccaCgccccaggtgagtgagcaga	17	11	0	4			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	77676338	77676338	C	T	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.4702	p.R1568C	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	78	0	0	92	24	20.69	-	-	-	T	77676338	C	T	77676338	3	4	765	1	0	0	0	0	1	0	0	0	14384	536	19	1	4728	1	SHROOM3	4	77676338	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	199522	77676338	113477938	31	66611										
SPARCL1	0	genome.wustl.edu	37	chr4	88415072	88415072	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agttttaccctcttgactctGccattcagtttcttgaatgt	6	10	4	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	88415072	88415072	G	A	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	nonsense	c.880	p.Q294*	0.514	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	680	0	0	530	123	18.81	-	-	-	A	88415072	G	A	88415072	4	1	765	1	0	0	0	0	0	1	0	0	15087	1328	46	4	1146	4	SPARCL1	4	88415072	Nonsense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	10738734	88415072	102739204	32	66612										
MANBA	0	genome.wustl.edu	37	chr4	103590198	103590198	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gcacaggcaaacataaaatcCtgccatacctagcaaatcaa	5	12	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	103590198	103590198	C	G	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	missense	c.1239	p.Q413H	1.000	pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	322	0	0	252	54	17.59	-	-	-	G	103590198	C	G	103590198	3	3	765	1	0	0	0	0	1	0	0	0	9290	680	24	4	1432	4	MANBA	4	103590198	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	15175126	103590198	87564078	33	66613										
KIAA1109	0	genome.wustl.edu	37	chr4	123230553	123230553	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acttttgtatccgttttgctGatggatttgagacatcatgg	10	6	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	123230553	123230553	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.10186	p.D3396Y	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	629	0	0	391	87	18.2	-	-	-	T	123230553	G	T	123230553	3	4	765	1	0	0	0	0	1	0	0	0	8260	1290	45	2	10412	2	KIAA1109	4	123230553	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	19640355	123230553	67923723	34	66614										
PCDH18	0	genome.wustl.edu	37	chr4	138451370	138451370	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	aattatgaagatattctcctCattacctgctactatggcgc	6	10	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	138451370	138451370	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1873	p.E625K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	222	0	0	179	36	16.74	-	-	-	T	138451370	C	T	138451370	3	4	765	1	0	0	0	0	1	0	0	0	11586	835	29	2	1550	2	PCDH18	4	138451370	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	15220817	138451370	52702906	35	66615										
GALNTL6	0	genome.wustl.edu	37	chr4	173961139	173961141	+	In_Frame_Del	DEL	AGA	AGA	-													0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	catggattgcaaccccgcagAgaagaagattttcatggcca							TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	4	173961139	173961141	AGA	-	DEL	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	in_frame_del	c.1694_1696	p.K567in_frame_del	1.000:1.000:1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	428	0	0	398	49	10.89	-	-	-	-	173961141	AGA	-	173961139	7	5	765	1	0	1	0	1	0	0	0	0	6275	304	11	0	1740	0	GALNTL6	4	173961139	In_Frame_Del	DEL	AGA	TCGA-E2-A152-01A-11D-A12B-09	35509769	173961139	17193137	36	66616										
TPPP	0	genome.wustl.edu	37	chr5	666230	666230	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	caaaggtgatggtccggcaaGacttccctctacaggggcac	12	12	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	666230	666230	G	A	SNP	TPPP	ENST00000360578	human	ensembl	69_37n	-1	known	missense	c.320	p.S107F	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP	HGNC	ENSG00000171368	71	0	0	109	19	14.84	-	-	-	A	666230	G	A	666230	3	1	765	1	0	0	0	0	1	0	0	0	16509	942	33	2	347	2	TPPP	5	666230	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		666230	180249030	37	66617										
TARS	0	genome.wustl.edu	37	chr5	33459816	33459816	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tcagagcgaatataggaaaaGaggattccaggaggtagtca	13	5	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	33459816	33459816	G	A	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.1100	p.R367K	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	185	0	0	123	42	25.45	-	-	-	A	33459816	G	A	33459816	3	1	765	1	0	0	0	0	1	0	0	0	15651	942	33	2	1142	2	TARS	5	33459816	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	32793586	33459816	147455444	38	66618										
RICTOR	0	genome.wustl.edu	37	chr5	38944601	38944601	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	actgaactactcaaattaatGactaatcttagaacttcttt	3	8	3	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	38944601	38944601	G	C	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.4932	p.V1644	0.386	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	427	0	0	272	40	12.78	-	-	-	C	38944601	G	C	38944601	2	2	765	1	0	0	0	0	0	0	0	1	13442	1277	45	2		2	RICTOR	5	38944601	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	5484785	38944601	141970659	39	66619										
ITGA2	0	genome.wustl.edu	37	chr5	52366060	52366060	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	atggtagtaaatcaagcacaGagttgccccgagcacatcat	9	10	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	52366060	52366060	G	C	SNP	ITGA2	ENST00000296585	human	ensembl	69_37n	1	known	missense	c.2205	p.Q735H	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGA2	HGNC	ENSG00000164171	164	0	0	92	54	36.99	-	-	-	C	52366060	G	C	52366060	3	2	765	1	0	0	0	0	1	0	0	0	7929	933	33	2	2271	2	ITGA2	5	52366060	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	13421459	52366060	128549200	40	66620										
PCDHGA3	0	genome.wustl.edu	37	chr5	140724883	140724883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tctgagagcctcagatggggGaagcccgccactgtccacag	13	13	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	140724883	140724883	G	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.1283	p.G428V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	152	0	0	131	28	17.5	-	-	-	T	140724883	G	T	140724883	3	4	765	1	0	0	0	0	1	0	0	0	11628	1174	41	2	1285	2	PCDHGA3	5	140724883	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	88358823	140724883	40190377	41	66621										
PPARGC1B	0	genome.wustl.edu	37	chr5	149206414	149206414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccctgccccggagaagccctCggccccagcccctgaggtgg	13	19	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	149206414	149206414	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	69_37n	1	known	missense	c.431	p.S144L	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	41	0	0	66	9	12	-	-	-	T	149206414	C	T	149206414	3	4	765	1	0	0	0	0	1	0	0	0	12374	893	31	1	448	1	PPARGC1B	5	149206414	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	8481531	149206414	31708846	42	66622										
UBTD2	0	genome.wustl.edu	37	chr5	171639034	171639034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gaatactgtgtctgtgctgcGaaccacaagcttgaggtctt	11	9	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	5	171639034	171639034	G	A	SNP	UBTD2	ENST00000393792	human	ensembl	69_37n	-1	known	missense	c.505	p.R169C	1.000	pfam_Ubiquitin,pfam_SUMO,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,pfscan_Ubiquitin_supergroup	-	no_errors	UBTD2	HGNC	ENSG00000168246	303	0	0	243	57	19	-	-	-	A	171639034	G	A	171639034	3	1	765	1	0	0	0	0	1	0	0	0	17005	1058	37	1	203	1	UBTD2	5	171639034	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	22432620	171639034	9276226	43	66623										
RIPK1	0	genome.wustl.edu	37	chr6	3081330	3081330	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agcctgaaaatatccttgttGataatgacttccacattaag	6	8	0	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	3081330	3081330	G	A	SNP	RIPK1	ENST00000259808	human	ensembl	69_37n	1	known	missense	c.439	p.D147N	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275	295	0	0	193	31	13.84	-	-	-	A	3081330	G	A	3081330	3	1	765	1	0	0	0	0	1	0	0	0	13466	1290	45	2	449	2	RIPK1	6	3081330	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		3081330	168033737	44	66624										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123904	26123904	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	atgcgccaggcgggaagcctCgcccgcgatgcgctcaaata	13	14	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	26123904	26123904	C	A	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	nonsense	c.229	p.E77*	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	139	0	0	110	26	19.12	-	-	-	A	26123904	C	A	26123904	4	1	765	1	0	0	0	0	0	1	0	0	7193	893	31	3	155	3	HIST1H2BC	6	26123904	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	23042574	26123904	144991163	45	66625										
HIST1H2AD	0	genome.wustl.edu	37	chr6	26199108	26199108	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cttggccttgtggtgactctCagtcttcttggggagcagta	13	9	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	26199108	26199108	C	G	SNP	HIST1H2AD	ENST00000341023	human	ensembl	69_37n	-1	known	missense	c.364	p.E122Q	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866	417	0	0	304	54	15.08	-	-	-	G	26199108	C	G	26199108	3	3	765	1	0	0	0	0	1	0	0	0	7182	835	29	2	32	2	HIST1H2AD	6	26199108	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	75204	26199108	144915959	46	66626										
HIST1H4I	0	genome.wustl.edu	37	chr6	27107360	27107360	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	atggacgtggtctacgcgctCaagcgccagggccgcaccct	13	15	2	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	27107360	27107360	C	G	SNP	HIST1H4I	ENST00000354348	human	ensembl	69_37n	1	known	silent	c.273	p.L91	0.999	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4I	HGNC	ENSG00000198339	71	0	0	61	16	20.78	-	-	-	G	27107360	C	G	27107360	2	3	765	1	0	0	0	0	0	0	0	1	7224	813	29	2		2	HIST1H4I	6	27107360	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	908252	27107360	144007707	47	66627										
EYS	0	genome.wustl.edu	37	chr6	65531584	65531584	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tagtcccatctgcatcacatGaacatggatattcattaata	5	9	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	65531584	65531584	G	A	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.3197	p.S1066L	0.030	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	253	0	0	103	49	32.24	-	-	-	A	65531584	G	A	65531584	3	1	765	1	0	0	0	0	1	0	0	0	5369	1294	45	2	6174	2	EYS	6	65531584	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	38424224	65531584	105583483	48	66628										
COL12A1	0	genome.wustl.edu	37	chr6	75814970	75814970	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acgctgtcctgtgtacatgtGcaagaatttggaaaagcagg	12	7	0	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	75814970	75814970	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	silent	c.8217	p.C2739	0.997	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	226	0	0	151	30	16.57	-	-	-	A	75814970	G	A	75814970	2	1	765	1	0	0	0	0	0	0	0	1	3699	1311	46	4		4	COL12A1	6	75814970	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	10283386	75814970	95300097	49	66629										
COL12A1	0	genome.wustl.edu	37	chr6	75892984	75892984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tcagttttatcgcaggatctCtgaaagcatctgatgatttc	8	8	3	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	75892984	75892984	C	G	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.1673	p.R558T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	404	0	0	251	49	16.33	-	-	-	G	75892984	C	G	75892984	3	3	765	1	0	0	0	0	1	0	0	0	3699	913	32	2	7746	2	COL12A1	6	75892984	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	78014	75892984	95222083	50	66630										
CDK19	0	genome.wustl.edu	37	chr6	110944522	110944522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cactttgctgtcaggcttgaCcttgtgtttctccatgtact	8	11	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	6	110944522	110944522	C	A	SNP	CDK19	ENST00000368911	human	ensembl	69_37n	-1	known	missense	c.904	p.V302F	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	366	0	0	240	57	19.13	-	-	-	A	110944522	C	A	110944522	3	1	765	1	0	0	0	0	1	0	0	0	3164	507	18	4	624	4	CDK19	6	110944522	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	35051538	110944522	60170545	51	66631										
PLEKHA8	0	genome.wustl.edu	37	chr7	30088947	30088947	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gccttcacctctgagctgctCtaccgcactccaccaggatc	7	18	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	30088947	30088947	C	G	SNP	PLEKHA8	ENST00000449726	human	ensembl	69_37n	1	known	silent	c.546	p.L182	0.003	NULL	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086	406	0	0	387	103	21.02	-	-	-	G	30088947	C	G	30088947	2	3	765	1	0	0	0	0	0	0	0	1	12136	900	32	2		2	PLEKHA8	7	30088947	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		30088947	129049716	52	66632										
POU6F2	0	genome.wustl.edu	37	chr7	39125579	39125579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agcgagctgaatgagcccctGcttgcgcctgtggaatcaaa	12	11	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	39125579	39125579	G	A	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	silent	c.138	p.L46	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	423	0	0	316	153	32.62	-	-	-	A	39125579	G	A	39125579	2	1	765	1	0	0	0	0	0	0	0	1	12358	1306	46	4		4	POU6F2	7	39125579	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	9036632	39125579	120013084	53	66633										
LIMK1	0	genome.wustl.edu	37	chr7	73511431	73511431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tggctggggagctgaagtacCaccccgagtgtttcatctgc	13	11	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	73511431	73511431	C	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	missense	c.313	p.H105Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	92	0	0	95	21	18.1	-	-	-	T	73511431	C	T	73511431	3	4	765	1	0	0	0	0	1	0	0	0	8856	594	21	4	327	4	LIMK1	7	73511431	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	34385852	73511431	85627232	54	66634										
MUC17	0	genome.wustl.edu	37	chr7	100681335	100681335	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	aggtaccagcatgccaacctCaactcctagtgaaggaagca	9	12	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	100681335	100681335	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6638	p.S2213L	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	236	0	0	170	38	18.27	-	-	-	T	100681335	C	T	100681335	3	4	765	1	0	0	0	0	1	0	0	0	10046	838	29	2	6648	2	MUC17	7	100681335	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	27169904	100681335	58457328	55	66635										
MUC17	0	genome.wustl.edu	37	chr7	100683508	100683508	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acaagtatacttgtcagcacCgtgccagtggccggttctga	11	11	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	100683508	100683508	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.8811	p.T2937	0.002	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	114	0	0	88	21	19.27	-	-	-	T	100683508	C	T	100683508	2	4	765	1	0	0	0	0	0	0	0	1	10046	639	23	1		1	MUC17	7	100683508	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	2173	100683508	58455155	56	66636										
TSGA13	0	genome.wustl.edu	37	chr7	130364154	130364154	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gctggtgtttttcctgttttGagccaggaatttctgcaggg	13	7	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	130364154	130364154	G	C	SNP	TSGA13	ENST00000356588	human	ensembl	69_37n	-1	known	missense	c.226	p.Q76E	0.015	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265	664	0	0	609	115	15.88	-	-	-	C	130364154	G	C	130364154	3	2	765	1	0	0	0	0	1	0	0	0	16715	1299	45	2	617	2	TSGA13	7	130364154	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	29680646	130364154	28774509	57	66637										
NUP205	0	genome.wustl.edu	37	chr7	135272700	135272700	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gactccgactatcatgggctCttatctaggggtggctcatc	11	11	4	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	135272700	135272700	C	G	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	1	known	missense	c.1433	p.S478C	1.000	pfam_DUF3414	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	334	0	0	271	52	16.05	-	-	-	G	135272700	C	G	135272700	3	3	765	1	0	0	0	0	1	0	0	0	10832	913	32	2	1471	2	NUP205	7	135272700	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	4908546	135272700	23865963	58	66638										
PIP	0	genome.wustl.edu	37	chr7	142836690	142836690	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gatgctgctgtaatccccatCaaaaacaaccggttttatac	6	11	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	142836690	142836690	C	G	SNP	PIP	ENST00000291009	human	ensembl	69_37n	1	known	missense	c.396	p.I132M	0.001	pirsf_SV_autoAg	pfam_SV_autoAg,pirsf_SV_autoAg	-	no_errors	PIP	HGNC	ENSG00000159763	277	0	0	227	59	20.63	-	-	-	G	142836690	C	G	142836690	3	3	765	1	0	0	0	0	1	0	0	0	12009	816	29	2	410	2	PIP	7	142836690	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	7563990	142836690	16301973	59	66639										
ZNF786	0	genome.wustl.edu	37	chr7	148767652	148767652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cttgtaaatgaagcccttccCacaatcgccacaggcaaagg	8	13	0	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	7	148767652	148767652	C	T	SNP	ZNF786	ENST00000491431	human	ensembl	69_37n	-1	known	missense	c.2212	p.G738R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	317	0	0	203	118	36.65	-	-	-	T	148767652	C	T	148767652	3	4	765	1	0	0	0	0	1	0	0	0	18251	594	21	4	140	4	ZNF786	7	148767652	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	5930962	148767652	10371011	60	66640										
CSMD1	0	genome.wustl.edu	37	chr8	3057296	3057296	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ctttgcactgaatcggagcaGaatttgatttgacgtagcca	10	8	0	4			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	8	3057296	3057296	G	A	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.3575	p.S1192F	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	129	0	0	77	29	27.36	-	-	-	A	3057296	G	A	3057296	3	1	765	1	0	0	0	0	1	0	0	0	3976	933	33	2	5712	2	CSMD1	8	3057296	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		3057296	143306726	61	66641										
FREM1	0	genome.wustl.edu	37	chr9	14851512	14851512	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ggaggtcaggatgaactgatCcacttccagaataaacacgg	11	9	1	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	9	14851512	14851512	C	G	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.925	p.D309H	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	257	0	0	161	37	18.69	-	-	-	G	14851512	C	G	14851512	3	3	765	1	0	0	0	0	1	0	0	0	6093	855	30	2	5795	2	FREM1	9	14851512	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		14851512	126361919	62	66642										
GRIN3A	0	genome.wustl.edu	37	chr9	104499593	104499593	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cgtggaaactcgtggcgcacGatgctgatcactggaatgtg	14	9	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	9	104499593	104499593	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	silent	c.669	p.I223	0.999	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	70	0	0	93	14	13.08	-	-	-	A	104499593	G	A	104499593	2	1	765	1	0	0	0	0	0	0	0	1	6834	1048	37	1		1	GRIN3A	9	104499593	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	89648081	104499593	36713838	63	66643										
ZNF462	0	genome.wustl.edu	37	chr9	109689136	109689136	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cagaccctgagggagattctGaattcggctcccaagaacat	10	11	1	5			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	9	109689136	109689136	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.2943	p.L981	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	215	0	0	181	46	20.26	-	-	-	A	109689136	G	A	109689136	2	1	765	1	0	0	0	0	0	0	0	1	18022	1277	45	2		2	ZNF462	9	109689136	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	5189543	109689136	31524295	64	66644										
SARDH	0	genome.wustl.edu	37	chr9	136595296	136595296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cacgaatgccggtcactgggCagttctcaatgacctggaat	11	11	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	9	136595296	136595296	C	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	missense	c.704	p.C235Y	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	133	0	0	160	32	16.67	-	-	-	T	136595296	C	T	136595296	3	4	765	1	0	0	0	0	1	0	0	0	13928	710	25	4	2120	4	SARDH	9	136595296	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	26906160	136595296	4618135	65	66645										
TTC18	0	genome.wustl.edu	37	chr10	75034278	75034278	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acaaagctaatggttcgttcAtagcatgccttggcctcaga	9	10	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	10	75034278	75034278	A	C	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	nonsense	c.2958	p.Y986*	0.999	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	372	0	0	248	57	18.69	-	-	-	C	75034278	A	C	75034278	4	2	765	1	0	0	0	0	0	1	0	0	16782	224	8	5	427	5	TTC18	10	75034278	Nonsense_Mutation	SNP	A	TCGA-E2-A152-01A-11D-A12B-09		75034278	60500469	66	66646										
FAM45A	0	genome.wustl.edu	37	chr10	120863682	120863682	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cggccgaggtggcggacactCagctgatgcttggagtcggg	18	10	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	10	120863682	120863682	C	G	SNP	FAM45A	ENST00000361432	human	ensembl	69_37n	1	known	missense	c.28	p.Q10E	1.000	NULL	pfam_Secretory_pathway_prot_Avl9	-	no_errors	FAM45A	HGNC	ENSG00000119979	12	0	0	22	7	24.14	-	-	-	G	120863682	C	G	120863682	3	3	765	1	0	0	0	0	1	0	0	0	5610	827	29	2	30	2	FAM45A	10	120863682	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	45829404	120863682	14671065	67	66647										
FANK1	0	genome.wustl.edu	37	chr10	127668745	127668745	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tttagaaatcatgccaccctCaaagcctcatccacctgtcg	5	15	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	10	127668745	127668745	C	T	SNP	FANK1	ENST00000368693	human	ensembl	69_37n	1	known	missense	c.29	p.S10L	0.753	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	314	0	0	202	48	19.2	-	-	-	T	127668745	C	T	127668745	3	4	765	1	0	0	0	0	1	0	0	0	5718	838	29	2	35	2	FANK1	10	127668745	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	6805063	127668745	7866002	68	66648										
OR2AG1	0	genome.wustl.edu	37	chr11	6807135	6807135	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccagccctgaatccactcatCtacagcctgaggaataagga	8	13	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	11	6807135	6807135	C	G	SNP	OR2AG1	ENST00000307401	human	ensembl	69_37n	1	known	missense	c.867	p.I289M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2AG1	HGNC	ENSG00000170803	509	0	0	249	88	26.11	-	-	-	G	6807135	C	G	6807135	3	3	765	1	0	0	0	0	1	0	0	0	11057	903	32	2	869	2	OR2AG1	11	6807135	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		6807135	128199381	69	66649										
TEAD1	0	genome.wustl.edu	37	chr11	12785961	12785961	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gaggaggaaaatcatcttatCagacgaaggcaaaatgtatg	11	5	3	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	11	12785961	12785961	C	G	SNP	TEAD1	ENST00000361905	human	ensembl	69_37n	1	known	nonsense	c.137	p.S46*	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD1	HGNC	ENSG00000187079	248	0	0	118	22	15.71	-	-	-	G	12785961	C	G	12785961	4	3	765	1	0	0	0	0	0	1	0	0	15833	838	29	2	184	2	TEAD1	11	12785961	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	5978826	12785961	122220555	70	66650										
SLC17A6	0	genome.wustl.edu	37	chr11	22391723	22391723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttgaggaagtctttggatttGaaattagcaaggtatgtaaa	11	2	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	11	22391723	22391723	G	A	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	missense	c.1030	p.E344K	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	178	0	0	73	18	19.78	-	-	-	A	22391723	G	A	22391723	3	1	765	1	0	0	0	0	1	0	0	0	14510	1291	45	2	1060	2	SLC17A6	11	22391723	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	9605762	22391723	112614793	71	66651										
CCNT1	0	genome.wustl.edu	37	chr12	49086993	49086993	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ggctgaacaccctgggcactGagcagggagtgaagcatatt	14	9	0	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	12	49086993	49086993	G	C	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	silent	c.2004	p.L668	0.999	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	315	0	0	307	55	15.15	-	-	-	C	49086993	G	C	49086993	2	2	765	1	0	0	0	0	0	0	0	1	2963	1277	45	2		2	CCNT1	12	49086993	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		49086993	84764902	72	66652										
AQP5	0	genome.wustl.edu	37	chr12	50355892	50355892	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cgtcttctttggcctgggctCggccctcaagtggccgtcgg	14	14	3	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	12	50355892	50355892	C	G	SNP	AQP5	ENST00000293599	human	ensembl	69_37n	1	known	missense	c.92	p.S31W	0.949	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_Aquaporin	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_5,tigrfam_Aquaporin	-	no_errors	AQP5	HGNC	ENSG00000161798	56	0	0	64	19	22.89	-	-	-	G	50355892	C	G	50355892	3	3	765	1	0	0	0	0	1	0	0	0	831	893	31	3	94	3	AQP5	12	50355892	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	1268899	50355892	83496003	73	66653										
DGKA	0	genome.wustl.edu	37	chr12	56335341	56335341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	aaaccctcgacaggtgttcaAcctcctaaaggatggtcctg	9	12	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	12	56335341	56335341	A	G	SNP	DGKA	ENST00000331886	human	ensembl	69_37n	1	known	missense	c.1223	p.N408S	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357	463	1	0.22	322	144	30.84	-	-	-	G	56335341	A	G	56335341	3	3	765	1	0	0	0	0	1	0	0	0	4501	43	2	5	1277	5	DGKA	12	56335341	Missense_Mutation	SNP	A	TCGA-E2-A152-01A-11D-A12B-09	5979449	56335341	77516554	74	66654										
LRRC43	0	genome.wustl.edu	37	chr12	122685099	122685099	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	attctctcctggcctgtggtGctacctgctgttgacagtcc	10	13	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	12	122685099	122685099	G	A	SNP	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	silent	c.1512	p.V504	0.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	188	0	0	180	49	21.4	-	-	-	A	122685099	G	A	122685099	2	1	765	1	0	0	0	0	0	0	0	1	9067	1306	46	4		4	LRRC43	12	122685099	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	66349758	122685099	11166796	75	66655										
NFATC4	0	genome.wustl.edu	37	chr14	24836334	24836334	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccgagtcacgaatctcccatCtaactccctctcacacaacc	3	19	4	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	14	24836334	24836334	C	G	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	missense	c.74	p.S25C	0.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	391	0	0	470	87	15.59	-	-	-	G	24836334	C	G	24836334	3	3	765	1	0	0	0	0	1	0	0	0	10437	913	32	2	76	2	NFATC4	14	24836334	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		24836334	82513206	76	66656										
EML5	0	genome.wustl.edu	37	chr14	89091348	89091348	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cccagtcacgataagtccatCtcgcagggtggtgtacatgg	12	11	2	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	14	89091348	89091348	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.4864	p.D1622N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	158	0	0	136	35	20.47	-	-	-	T	89091348	C	T	89091348	3	4	765	1	0	0	0	0	1	0	0	0	5137	913	32	2	1105	2	EML5	14	89091348	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	64255014	89091348	18258192	77	66657										
UNC13C	0	genome.wustl.edu	37	chr15	54793090	54793090	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccgtggttgatgtctttgctCagctgaatcagagctttgaa	11	8	3	4			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	15	54793090	54793090	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	nonsense	c.5215	p.Q1739*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	367	0	0	201	77	27.7	-	-	-	T	54793090	C	T	54793090	4	4	765	1	0	0	0	0	0	1	0	0	17083	827	29	2	5293	2	UNC13C	15	54793090	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		54793090	47738302	78	66658										
ZNF609	0	genome.wustl.edu	37	chr15	64792007	64792007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gcgctcaggagatggtgccaAtgctggaggcctggttgctg	17	9	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	15	64792007	64792007	A	G	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	missense	c.389	p.N130S	0.993	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	186	1	0.53	78	69	46.94	-	-	-	G	64792007	A	G	64792007	3	3	765	1	0	0	0	0	1	0	0	0	18131	101	4	5	391	5	ZNF609	15	64792007	Missense_Mutation	SNP	A	TCGA-E2-A152-01A-11D-A12B-09	9998917	64792007	37739385	79	66659										
SMAD3	0	genome.wustl.edu	37	chr15	67457304	67457304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	catctactgccgcctgtggcGatggccagacctgcacagcc	11	16	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	15	67457304	67457304	G	A	SNP	SMAD3	ENST00000327367	human	ensembl	69_37n	1	known	missense	c.278	p.R93Q	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949	61	0	0	30	27	47.37	-	-	-	A	67457304	G	A	67457304	3	1	765	1	0	0	0	0	1	0	0	0	14848	1058	37	1	362	1	SMAD3	15	67457304	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	2665297	67457304	35074088	80	66660										
CHRNB4	0	genome.wustl.edu	37	chr15	78921439	78921439	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tggggatagccaccggggtaGagccggctggagacttggaa	18	8	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	15	78921439	78921439	G	A	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.1208	p.S403F	0.003	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	215	0	0	253	85	25.07	-	-	-	A	78921439	G	A	78921439	3	1	765	1	0	0	0	0	1	0	0	0	3422	942	33	2	296	2	CHRNB4	15	78921439	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	11464135	78921439	23609953	81	66661										
ZNF48	0	genome.wustl.edu	37	chr16	30409375	30409375	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acggcagctacccagggaccGaaggcccaggacaagccata	12	14	0	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	16	30409375	30409375	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	1	known	silent	c.804	p.P268	0.289	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	84	0	0	76	16	17.39	-	-	-	A	30409375	G	A	30409375	2	1	765	1	0	0	0	0	0	0	0	1	18030	1045	37	1		1	ZNF48	16	30409375	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		30409375	59945378	82	66662										
SF3B3	0	genome.wustl.edu	37	chr16	70569223	70569223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tctcacagttccaggagggtCagatggtccaagtggagtac	13	9	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	16	70569223	70569223	C	T	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	missense	c.725	p.S242L	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	297	0	0	180	28	13.46	-	-	-	T	70569223	C	T	70569223	3	4	765	1	0	0	0	0	1	0	0	0	14240	838	29	2	743	2	SF3B3	16	70569223	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	40159848	70569223	19785530	83	66663										
SNAI3	0	genome.wustl.edu	37	chr16	88747605	88747605	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tgagtgcggatgtgcatcttGagggcacccaggctggtgta	16	8	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	16	88747605	88747605	G	A	SNP	SNAI3	ENST00000332281	human	ensembl	69_37n	-1	known	silent	c.594	p.L198	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669	105	0	0	76	43	36.13	-	-	-	A	88747605	G	A	88747605	2	1	765	1	0	0	0	0	0	0	0	1	14917	1277	45	2		2	SNAI3	16	88747605	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	18178382	88747605	1607148	84	66664										
CHRNB1	0	genome.wustl.edu	37	chr17	7359155	7359155	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cctgatctgcggcgatttatCgatggtccaaaccgggctgt	12	11	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	17	7359155	7359155	C	A	SNP	CHRNB1	ENST00000570557	human	ensembl	69_37n	1	novel	nonsense	c.923	p.S308*	0.987	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHRNB1	HGNC	ENSG00000170175	115	0	0	86	28	24.56	-	-	-	A	7359155	C	A	7359155	4	1	765	1	0	0	0	0	0	1	0	0	3419	874	31	3	1298	3	CHRNB1	17	7359155	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		7359155	73836055	85	66665										
TP53	0	genome.wustl.edu	37	chr17	7578536	7578536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ggccagttggcaaaacatctTgttgagggcaggggagtact	15	7	1	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	17	7578536	7578536	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.394	p.K132E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	130	0	0	54	54	50	-	-	-	C	7578536	T	C	7578536	3	2	765	1	0	0	0	0	1	0	0	0	16477	1821	63	5	904	5	TP53	17	7578536	Missense_Mutation	SNP	T	TCGA-E2-A152-01A-11D-A12B-09	219381	7578536	73616674	86	66666										
KRTAP4-8	0	genome.wustl.edu	37	chr17	39254032	39254032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	agctggacacacagcagctgGggcggcagcagctggagatg	17	10	0	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	17	39254032	39254032	G	T	SNP	KRTAP4-8	ENST00000333822	human	ensembl	69_37n	-1	known	missense	c.305	p.P102H	0.655	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-8	HGNC	ENSG00000204880	23	0	0	18	12	40	-	-	-	T	39254032	G	T	39254032	3	4	765	1	0	0	0	0	1	0	0	0	8610	1232	43	4	256	4	KRTAP4-8	17	39254032	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	31675496	39254032	41941178	87	66667										
PPM1E	0	genome.wustl.edu	37	chr17	57043169	57043169	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccagctttattatgagacatCaatccatgccatcaaaaaca	4	11	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	17	57043169	57043169	C	G	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	nonsense	c.698	p.S233*	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	283	0	0	171	62	26.61	-	-	-	G	57043169	C	G	57043169	4	3	765	1	0	0	0	0	0	1	0	0	12415	838	29	2	708	2	PPM1E	17	57043169	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	17789137	57043169	24152041	88	66668										
SMAD2	0	genome.wustl.edu	37	chr18	45372102	45372102	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tacaattggggctctgcacaAagattgcactatcacttagg	9	9	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	18	45372102	45372102	A	C	SNP	SMAD2	ENST00000262160	human	ensembl	69_37n	-1	known	missense	c.1067	p.F356C	1.000	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387	351	0	0	100	110	52.38	-	-	-	C	45372102	A	C	45372102	3	2	765	1	0	0	0	0	1	0	0	0	14847	14	1	5	348	5	SMAD2	18	45372102	Missense_Mutation	SNP	A	TCGA-E2-A152-01A-11D-A12B-09		45372102	32705146	89	66669										
LPPR2	0	genome.wustl.edu	37	chr19	11473233	11473233	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gtgaagggctcccgcctggtCaaaccctcgctctgcctggc	12	16	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	11473233	11473233	C	G	SNP	LPPR2	ENST00000591608	human	ensembl	69_37n	1	known	silent	c.633	p.V211	0.940	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	65	0	0	18	17	48.57	-	-	-	G	11473233	C	G	11473233	2	3	765	1	0	0	0	0	0	0	0	1	8991	813	29	2		2	LPPR2	19	11473233	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09		11473233	47655750	90	66670										
EPOR	0	genome.wustl.edu	37	chr19	11488778	11488778	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gggctccctgggagtcccctGagctgtagtcagttgagatg	15	10	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	11488778	11488778	G	A	SNP	EPOR	ENST00000222139	human	ensembl	69_37n	-1	known	missense	c.1409	p.S470L	0.971	pirsf_Erythropoietin_rcpt	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Erythropoietin_rcpt,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266	125	0	0	59	60	50.42	-	-	-	A	11488778	G	A	11488778	3	1	765	1	0	0	0	0	1	0	0	0	5226	1294	45	2	121	2	EPOR	19	11488778	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	15545	11488778	47640205	91	66671										
MAST1	0	genome.wustl.edu	37	chr19	12976890	12976890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gttcatcccccacctagagtCggaagatgacactagctact	8	13	1	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	12976890	12976890	C	T	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.2003	p.S668L	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	183	0	0	100	37	26.81	-	-	-	T	12976890	C	T	12976890	3	4	765	1	0	0	0	0	1	0	0	0	9395	893	31	1	2069	1	MAST1	19	12976890	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	1488112	12976890	46152093	92	66672										
FBL	0	genome.wustl.edu	37	chr19	40328380	40328380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tgcggtatttgtgtgggtgtCgagcatcctcgatcacagga	14	8	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	40328380	40328380	C	T	SNP	FBL	ENST00000221801	human	ensembl	69_37n	-1	known	missense	c.653	p.R218Q	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202	273	0	0	219	100	31.35	-	-	-	T	40328380	C	T	40328380	3	4	765	1	0	0	0	0	1	0	0	0	5742	884	31	1	328	1	FBL	19	40328380	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	27351490	40328380	18800603	93	66673										
LTBP4	0	genome.wustl.edu	37	chr19	41117097	41117097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gagcccaggcctgtgtggccGaggggcctgcaagaacctgc	16	13	0	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	41117097	41117097	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.2051	p.R684L	0.963	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	85	0	0	118	26	18.06	-	-	-	T	41117097	G	T	41117097	3	4	765	1	0	0	0	0	1	0	0	0	9142	1058	37	3	2406	3	LTBP4	19	41117097	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	788717	41117097	18011886	94	66674										
C19orf76	0	genome.wustl.edu	37	chr19	50193365	50193365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cccacgctccctctccaggcGaggccagcaccaggtccccc	9	22	1	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	50193365	50193365	G	A	SNP	C19orf76	ENST00000420022	human	ensembl	69_37n	1	known	missense	c.77	p.R26Q	0.000	NULL	NULL	-	no_errors	C19orf76	HGNC	ENSG00000224420	17	0	0	19	12	38.71	-	-	-	A	50193365	G	A	50193365	3	1	765	1	0	0	0	0	1	0	0	0	1969	1058	37	1	83	1	C19orf76	19	50193365	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	9076268	50193365	8935618	95	66675										
AP2A1	0	genome.wustl.edu	37	chr19	50302177	50302177	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gccaagaacgccatcctcttCgagaccatcagcctcatcat	6	16	4	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	50302177	50302177	C	T	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	silent	c.933	p.F311	0.984	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	145	0	0	151	27	15.17	-	-	-	T	50302177	C	T	50302177	2	4	765	1	0	0	0	0	0	0	0	1	740	883	31	1		1	AP2A1	19	50302177	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	108812	50302177	8826806	96	66676										
ZNF480	0	genome.wustl.edu	37	chr19	52825581	52825581	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ataggattgcgctccttgtaCgacatcagaaaattcatact	7	9	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	52825581	52825581	C	T	SNP	ZNF480	ENST00000468240	human	ensembl	69_37n	1	known	nonsense	c.1078	p.R360*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464	117	0	0	69	8	10.39	-	-	-	T	52825581	C	T	52825581	4	4	765	1	0	0	0	0	0	1	0	0	18031	528	19	1	1092	1	ZNF480	19	52825581	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	2523404	52825581	6303402	97	66677										
NLRP2	0	genome.wustl.edu	37	chr19	55493529	55493529	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ccctcctcaccaatgataaaGacaaagacaataggtgcagg	8	11	1	3			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	55493529	55493529	G	C	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	splice_site	c.464-1	e5-1	0.000	-	-	-	no_errors	NLRP2	HGNC	ENSG00000022556	131	0	0	101	17	14.41	-	-	-	C	55493529	G	C	55493529	5	2	765	1	0	0	0	0	0	0	1	0	10549	956	33	2	481	2	NLRP2	19	55493529	Splice_Site	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	2667948	55493529	3635454	98	66678										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56735124	56735124	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acacgtctttcagatcatctCtgacactggagggggcttca	10	11	5	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	19	56735124	56735124	C	G	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.464	p.R155T	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	113	0	0	160	20	11.11	-	-	-	G	56735124	C	G	56735124	3	3	765	1	0	0	0	0	1	0	0	0	18329	913	32	2	1038	2	ZSCAN5A	19	56735124	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	1241595	56735124	2393859	99	66679										
TMEM189-UBE2V1	0	genome.wustl.edu	37	chr20	48699337	48699337	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acactgtccttcgggcggctGagggagtttcatattttctt	11	9	2	1			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	20	48699337	48699337	G	A	SNP	TMEM189-UBE2V1	ENST00000341698	human	ensembl	69_37n	-1	known	nonsense	c.1081	p.Q361*	1.000	superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_KuaUb-conj-enz_UEV1,pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	TMEM189-UBE2V1	HGNC	ENSG00000124208	488	0	0	438	70	13.78	-	-	-	A	48699337	G	A	48699337	4	1	765	1	0	0	0	0	0	1	0	0	16207	1299	45	2	35	2	TMEM189-UBE2V1	20	48699337	Nonsense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		48699337	14326183	100	66680										
ZBTB46	0	genome.wustl.edu	37	chr20	62421337	62421337	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tgccaggcatcaccagcactCtgctctgagaaagagttctg	10	12	4	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	20	62421337	62421337	C	G	SNP	ZBTB46	ENST00000245663	human	ensembl	69_37n	-1	known	missense	c.774	p.Q258H	0.969	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584	109	0	0	127	28	17.95	-	-	-	G	62421337	C	G	62421337	3	3	765	1	0	0	0	0	1	0	0	0	17643	912	32	2	1011	2	ZBTB46	20	62421337	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	13722000	62421337	604183	101	66681										
PLA2G6	0	genome.wustl.edu	37	chr22	38541572	38541572	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	gacctcagtgtgcaggacctGaggggagctctcatagaagg	15	9	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	22	38541572	38541572	G	C	SNP	PLA2G6	ENST00000332509	human	ensembl	69_37n	-1	known	missense	c.298	p.Q100E	0.273	NULL	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381	108	0	0	267	40	13.03	-	-	-	C	38541572	G	C	38541572	3	2	765	1	0	0	0	0	1	0	0	0	12082	1299	45	2	2182	2	PLA2G6	22	38541572	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		38541572	12762994	102	66682										
P2RY4	0	genome.wustl.edu	37	chrX	69478551	69478551	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	cgtcgatatttgtccccagtGagcaagtagagcacaggatc	11	10	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	69478551	69478551	G	C	SNP	P2RY4	ENST00000374519	human	ensembl	69_37n	-1	known	silent	c.924	p.L308	1.000	prints_P2Y4_purnocptor,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY4	HGNC	ENSG00000186912	107	0	0	100	47	31.97	-	-	-	C	69478551	G	C	69478551	2	2	765	1	0	0	0	0	0	0	0	1	11426	1277	45	2		2	P2RY4	23	69478551	Silent	SNP	G	TCGA-E2-A152-01A-11D-A12B-09		69478551	85792009	103	66683										
KIAA2022	0	genome.wustl.edu	37	chrX	73962903	73962903	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tttttcaccctctagtgagtCaacatcatatagataatctt	4	9	5	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	73962903	73962903	C	G	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.1489	p.D497H	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	534	0	0	449	79	14.96	-	-	-	G	73962903	C	G	73962903	3	3	765	1	0	0	0	0	1	0	0	0	8321	826	29	2	3069	2	KIAA2022	23	73962903	Missense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	4484352	73962903	81307657	104	66684										
ATP7A	0	genome.wustl.edu	37	chrX	77289220	77289220	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ataagaataactggaatataGaggacaataatattaaaaat	6	2	0	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	77289220	77289220	G	A	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	1	known	missense	c.3412	p.E1138K	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	468	0	0	264	107	28.69	-	-	-	A	77289220	G	A	77289220	3	1	765	1	0	0	0	0	1	0	0	0	1194	943	33	2	3474	2	ATP7A	23	77289220	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	3326317	77289220	77981340	105	66685										
HMGN5	0	genome.wustl.edu	37	chrX	80371738	80371738	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	ttctccatttttagcattttCattgtagtcttcttcaacaa	3	9	5	0			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	80371738	80371738	C	A	SNP	HMGN5	ENST00000358130	human	ensembl	69_37n	-1	known	nonsense	c.232	p.E78*	0.484	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	823	1	0.12	644	98	13.12	-	-	-	A	80371738	C	A	80371738	4	1	765	1	0	0	0	0	0	1	0	0	7289	835	29	2	624	2	HMGN5	23	80371738	Nonsense_Mutation	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	3082518	80371738	74898822	106	66686										
VSIG1	0	genome.wustl.edu	37	chrX	107301404	107301404	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	tccatccagtggtctttcttCcataagaaggagatggagcc	10	10	2	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	107301404	107301404	C	T	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	silent	c.186	p.F62	0.002	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	543	0	0	441	92	17.26	-	-	-	T	107301404	C	T	107301404	2	4	765	1	0	0	0	0	0	0	0	1	17319	854	30	2		2	VSIG1	23	107301404	Silent	SNP	C	TCGA-E2-A152-01A-11D-A12B-09	26929666	107301404	47969156	107	66687										
GABRQ	0	genome.wustl.edu	37	chrX	151808900	151808900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.490740740740741	53	6.8073325972881e-20	4.0094179246566	5.0187969924812	3.31670679967894	1	1	40	acagggtgctgtcaagatacGatgtccgcctgagaccgaat	12	10	1	2			TCGA-E2-A152-01A-11D-A12B-09	TCGA-E2-A152-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b266b370-425c-4146-8b72-59248436618e	61e9e215-f15b-4968-9afc-4931ad991c80	X	151808900	151808900	G	A	SNP	GABRQ	ENST00000370306	human	ensembl	69_37n	1	known	missense	c.211	p.D71N	0.999	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402	475	0	0	507	115	18.49	-	-	-	A	151808900	G	A	151808900	3	1	765	1	0	0	0	0	1	0	0	0	6224	1058	37	1	217	1	GABRQ	23	151808900	Missense_Mutation	SNP	G	TCGA-E2-A152-01A-11D-A12B-09	44507496	151808900	3461660	108	66688										
OPRD1	0	genome.wustl.edu	37	chr1	29189416	29189416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	gcgcagtgtgcgcctgctgtCgggctccaaggagaaggacc	16	12	0	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	1	29189416	29189416	C	T	SNP	OPRD1	ENST00000234961	human	ensembl	69_37n	1	known	missense	c.740	p.S247L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Opioid_rcpt,prints_Neuropept_W_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_Somatstn_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329	35	0	0	68	40	37.04	-	-	-	T	29189416	C	T	29189416	3	4	766	1	0	0	0	0	1	0	0	0	10957	893	31	1	750	1	OPRD1	1	29189416	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		29189416	220061205	1	66689										
SYCP1	0	genome.wustl.edu	37	chr1	115454161	115454161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	cacaagtgaacagtattattCaaaagaggttaaagatctaa	7	5	2	3			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	1	115454161	115454161	C	T	SNP	SYCP1	ENST00000369518	human	ensembl	69_37n	1	known	missense	c.1487	p.S496L	0.953	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	356	0	0	210	82	28.08	-	-	-	T	115454161	C	T	115454161	3	4	766	1	0	0	0	0	1	0	0	0	15523	838	29	2	1553	2	SYCP1	1	115454161	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09	86264745	115454161	133796460	2	66690										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	316	1	0.32	180	52	22.41	-	-	-	A	178936091	G	A	178936091	3	1	766	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E2-A153-01A-12D-A12B-09		178936091	19086339	3	66691										
EPHA5	0	genome.wustl.edu	37	chr4	66201815	66201815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	aatccatggggcttggcagaCgatagccttcctctaccgct	10	13	1	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	4	66201815	66201815	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.2687	p.R896H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	233	1	0.43	231	60	20.62	-	-	-	T	66201815	C	T	66201815	3	4	766	1	0	0	0	0	1	0	0	0	5207	536	19	1	438	1	EPHA5	4	66201815	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		66201815	124952461	4	66692										
MTMR12	0	genome.wustl.edu	37	chr5	32233993	32233993	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	tgcaccgaccaatcccacacGgtgagcagattcaaaggctt	9	13	1	2			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	5	32233993	32233993	G	C	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	silent	c.1560	p.T520	0.995	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	202	0	0	285	77	21.21	-	-	-	C	32233993	G	C	32233993	2	2	766	1	0	0	0	0	0	0	0	1	10013	1103	39	3		3	MTMR12	5	32233993	Silent	SNP	G	TCGA-E2-A153-01A-12D-A12B-09		32233993	148681267	5	66693										
CCDC112	0	genome.wustl.edu	37	chr5	114620509	114620509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	tttaaatttttctgctgtgcGtacaaattctgctttcttag	6	7	3	0			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	5	114620509	114620509	G	A	SNP	CCDC112	ENST00000379611	human	ensembl	69_37n	-1	known	missense	c.214	p.R72C	0.952	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221	220	0	0	136	57	29.53	-	-	-	A	114620509	G	A	114620509	3	1	766	1	0	0	0	0	1	0	0	0	2774	1145	40	1	1411	1	CCDC112	5	114620509	Missense_Mutation	SNP	G	TCGA-E2-A153-01A-12D-A12B-09	82386516	114620509	66294751	6	66694										
GABRB2	0	genome.wustl.edu	37	chr5	160753392	160753392	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	aaccgtatacagagagaaatCgtaattggtagtccgtctag	10	7	1	2			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	5	160753392	160753392	C	A	SNP	GABRB2	ENST00000274547	human	ensembl	69_37n	-1	known	missense	c.1174	p.D392Y	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	390	0	0	230	94	29.01	-	-	-	A	160753392	C	A	160753392	3	1	766	1	0	0	0	0	1	0	0	0	6216	884	31	3	372	3	GABRB2	5	160753392	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09	46132883	160753392	20161868	7	66695										
MUT	0	genome.wustl.edu	37	chr6	49416584	49416584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	tcttcaattcgaagtttaggTattccctcagctacagcttt	6	10	3	0			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	6	49416584	49416584	T	C	SNP	MUT	ENST00000274813	human	ensembl	69_37n	-1	known	missense	c.1389	p.I463M	0.991	pfam_MeMalonylCoA_mutase_a/b_cat,superfamily_Cbl-dep_enz_cat,tigrfam_MMCoA_mutase_a_cat	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085	328	0	0	209	87	29.29	-	-	-	C	49416584	T	C	49416584	3	2	766	1	0	0	0	0	1	0	0	0	10063	1628	57	5	891	5	MUT	6	49416584	Missense_Mutation	SNP	T	TCGA-E2-A153-01A-12D-A12B-09		49416584	121698483	8	66696										
TRIM74	0	genome.wustl.edu	37	chr7	72436307	72436307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	caccttcatgcggctgcagaCggtggagacgggcgtgaccg	16	12	1	3			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	7	72436307	72436307	C	T	SNP	TRIM74	ENST00000285805	human	ensembl	69_37n	-1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM74	HGNC	ENSG00000155428	10	0	0	19	8	29.63	-	-	-	T	72436307	C	T	72436307	3	4	766	1	0	0	0	0	1	0	0	0	16643	551	19	1		1	TRIM74	7	72436307	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		72436307	86702356	9	66697										
KCNQ3	0	genome.wustl.edu	37	chr8	133141532	133141532	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	aatgggcttattggaaggggTccatactgaatcagaaatcc	11	7	1	2			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	8	133141532	133141532	T	C	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.2596	p.T866A	1.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	43	0	0	84	23	20.35	-	-	-	C	133141532	T	C	133141532	3	2	766	1	0	0	0	0	1	0	0	0	8138	1667	58	5	26	5	KCNQ3	8	133141532	Missense_Mutation	SNP	T	TCGA-E2-A153-01A-12D-A12B-09		133141532	13222490	10	66698										
DBH	0	genome.wustl.edu	37	chr9	136508616	136508616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	gcgcccccgagatggacagcGtcccccacttcagcgggccc	12	19	1	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	9	136508616	136508616	G	A	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	missense	c.826	p.V276I	0.017	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	29	0	0	28	6	17.65	-	-	-	A	136508616	G	A	136508616	3	1	766	1	0	0	0	0	1	0	0	0	4282	1145	40	1	840	1	DBH	9	136508616	Missense_Mutation	SNP	G	TCGA-E2-A153-01A-12D-A12B-09		136508616	4704815	11	66699										
CACNA1B	0	genome.wustl.edu	37	chr9	140952286	140952286	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	gtgctctgggctctgctgacGctgttcacagtgtccacggg	14	12	3	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	9	140952286	140952286	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	silent	c.4074	p.T1358	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	108	0	0	113	46	28.57	-	-	-	A	140952286	G	A	140952286	2	1	766	1	0	0	0	0	0	0	0	1	2564	1074	38	1		1	CACNA1B	9	140952286	Silent	SNP	G	TCGA-E2-A153-01A-12D-A12B-09	4443670	140952286	261145	12	66700										
TLL2	0	genome.wustl.edu	37	chr10	98129947	98129947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	ccggaatgtcagctccacgcCgtagccgtcctctgccacga	10	17	2	0			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	10	98129947	98129947	C	T	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.2788	p.G930S	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	51	0	0	62	15	19.48	-	-	-	T	98129947	C	T	98129947	3	4	766	1	0	0	0	0	1	0	0	0	16041	652	23	1	267	1	TLL2	10	98129947	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		98129947	37404800	13	66701										
CAT	0	genome.wustl.edu	37	chr11	34492955	34492955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	gcagtccggatctcacttggCggcaagggagaaggcaaatc	14	10	1	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	11	34492955	34492955	C	T	SNP	CAT	ENST00000241052	human	ensembl	69_37n	1	known	missense	c.1559	p.A520V	0.021	NULL	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691	183	0	0	145	70	32.56	-	-	-	T	34492955	C	T	34492955	3	4	766	1	0	0	0	0	1	0	0	0	2711	768	27	1	1609	1	CAT	11	34492955	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		34492955	100513561	14	66702										
C12orf40	0	genome.wustl.edu	37	chr12	40044140	40044140	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	ctacacgatttgggacattaTttgaaagattaaacaggtaa	8	5	0	2			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	12	40044140	40044140	T	G	SNP	C12orf40	ENST00000324616	human	ensembl	69_37n	1	known	missense	c.670	p.F224V	0.346	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116	359	0	0	146	36	19.78	-	-	-	G	40044140	T	G	40044140	3	3	766	1	0	0	0	0	1	0	0	0	1698	1493	52	5	696	5	C12orf40	12	40044140	Missense_Mutation	SNP	T	TCGA-E2-A153-01A-12D-A12B-09		40044140	93807755	15	66703										
TRMT5	0	genome.wustl.edu	37	chr14	61444282	61444282	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	cacttccatttggaaatttcGgtacatattgtcaatattat	5	7	1	0			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	14	61444282	61444282	G	A	SNP	TRMT5	ENST00000261249	human	ensembl	69_37n	-1	known	nonsense	c.742	p.R248*	1.000	pfam_tRNA_Trfase_Trm5/Tyw2	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT5	HGNC	ENSG00000126814	301	2	0.66	235	85	26.56	-	-	-	A	61444282	G	A	61444282	4	1	766	1	0	0	0	0	0	1	0	0	16663	1124	39	1	799	1	TRMT5	14	61444282	Nonsense_Mutation	SNP	G	TCGA-E2-A153-01A-12D-A12B-09		61444282	45905258	16	66704										
MAPKBP1	0	genome.wustl.edu	37	chr15	42115928	42115928	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	gctcacctggtcctggacatCcccaaaccactgcctgaccg	8	18	1	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	527161e1-3015-4b27-9f4b-53d6d2a05079	15	42115928	42115928	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	silent	c.3900	p.I1300	0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	139	0	0	119	28	19.05	-	-	-	T	42115928	C	T	42115928	2	4	766	1	0	0	0	0	0	0	0	1	9363	845	30	2		2	MAPKBP1	15	42115928	Silent	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		42115928	60415464	17	66705										
CBFB	0	genome.wustl.edu	37	chr16	67070600	67070601	+	Frame_Shift_Del	DEL	GA	GA	-													0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	ttttccggccagctggcaggGagaacagcgacaaacaccta							TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	16	67070600	67070601	GA	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_del	c.224_225	p.E76fs	1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	193	0	0	97	59	37.82	-	-	-	-	67070601	GA	-	67070600	7	5	766	1	0	1	0	1	0	0	0	0	2724	1174	41	0	234	0	CBFB	16	67070600	Frame_Shift_Del	DEL	GA	TCGA-E2-A153-01A-12D-A12B-09		67070600	23284153	18	66706										
RLTPR	0	genome.wustl.edu	37	chr16	67685827	67685827	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	tcctctcctgcccttagggaCatgcggctatcaatcacggg	10	14	3	0			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	16	67685827	67685827	C	T	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	silent	c.2592	p.D864	0.968	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	70	0	0	93	66	41.51	-	-	-	T	67685827	C	T	67685827	2	4	766	1	0	0	0	0	0	0	0	1	13480	477	17	4		4	RLTPR	16	67685827	Silent	SNP	C	TCGA-E2-A153-01A-12D-A12B-09	615227	67685827	22668926	19	66707										
ZNF41	0	genome.wustl.edu	37	chrX	47326822	47326822	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	2	0.904872247913239	1.00751879699248	0	1.08502024291498	0.333333333333333	0.930327025915261	0	tcctcacctcacatgagctgCcacgtccctctgcagccagg	8	18	3	1			TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5087c0d3-3b55-4713-a448-4869ffccdde5	66529b84-d110-45b3-acb9-fe08f97a7cce	X	47326822	47326822	C	A	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.49	p.A17S	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	40	0	0	65	18	21.69	-	-	-	A	47326822	C	A	47326822	3	1	766	1	0	0	0	0	1	0	0	0	17985	739	26	4	2296	4	ZNF41	23	47326822	Missense_Mutation	SNP	C	TCGA-E2-A153-01A-12D-A12B-09		47326822	107943738	20	66708										
HRNR	0	genome.wustl.edu	37	chr1	152188940	152188940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cgtggctggaggagtgccccAaaccggacccatgtcggccg	15	14	0	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	152188940	152188940	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5165	p.L1722S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	17	0	0	70	31	30.69	-	-	-	G	152188940	A	G	152188940	3	3	767	1	0	0	0	0	1	0	0	0	7410	131	5	5	3391	5	HRNR	1	152188940	Missense_Mutation	SNP	A	TCGA-E2-A154-01A-11D-A10Y-09		152188940	97061681	1	66709										
PGLYRP3	0	genome.wustl.edu	37	chr1	153270481	153270481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tgatgttatacaaagcctgcCcaggggacaggatgttgacc	12	9	0	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	153270481	153270481	C	A	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	missense	c.977	p.G326V	0.802	pfam_Amidase_domain,superfamily_Amidase_domain,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	100	0	0	198	32	13.91	-	-	-	A	153270481	C	A	153270481	3	1	767	1	0	0	0	0	1	0	0	0	11869	623	22	4	52	4	PGLYRP3	1	153270481	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	1081541	153270481	95980140	2	66710										
FCGR3B	0	genome.wustl.edu	37	chr1	161600164	161600164	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tgaagctgactcaccagtccGcatgccagctgaaactgcaa	9	13	1	3			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	161600164	161600164	G	T	SNP	FCGR3B	ENST00000421702	human	ensembl	69_37n	-1	putative	missense	c.119	p.A40E	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FCGR3B	HGNC	ENSG00000162747	72	0	0	132	59	30.89	-	-	-	T	161600164	G	T	161600164	3	4	767	1	0	0	0	0	1	0	0	0	5831	1086	38	3	662	3	FCGR3B	1	161600164	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	8329683	161600164	87650457	3	66711										
PRRX1	0	genome.wustl.edu	37	chr1	170695377	170695377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ccaggtgtggtttcagaaccGaagagccaagttccgcagga	13	10	1	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	170695377	170695377	G	A	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.434	p.R145Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	60	0	0	53	35	39.77	-	-	-	A	170695377	G	A	170695377	3	1	767	1	0	0	0	0	1	0	0	0	12692	1058	37	1	444	1	PRRX1	1	170695377	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	9095213	170695377	78555244	4	66712										
SLC40A1	0	genome.wustl.edu	37	chr2	190428591	190428591	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gctgtgccaatcctgagatcAgacctgtccgaaccaaacca	8	14	1	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	190428591	190428591	A	C	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.1121	p.L374R	0.978	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	102	0	0	67	51	42.86	-	-	-	C	190428591	A	C	190428591	3	2	767	1	0	0	0	0	1	0	0	0	14717	188	7	5	602	5	SLC40A1	2	190428591	Missense_Mutation	SNP	A	TCGA-E2-A154-01A-11D-A10Y-09		190428591	52770782	5	66713										
ALS2CR11	0	genome.wustl.edu	37	chr2	202358909	202358909	+	Frame_Shift_Del	DEL	T	T	-													0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tacgttgtcttccatactacTtgatgatttatcatgaatgc							TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	202358909	202358909	T	-	DEL	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	frame_shift_del	c.2155	p.S719fs	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	74	0	0	18	2	10	-	-	-	-	202358909	T	-	202358909	7	5	767	1	0	1	0	1	0	0	0	0	552	1609	56	0	3315	0	ALS2CR11	2	202358909	Frame_Shift_Del	DEL	T	TCGA-E2-A154-01A-11D-A10Y-09	11930318	202358909	40840464	6	66714										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	147	0	0	68	72	51.06	-	-	-	T	178952085	A	T	178952085	3	4	767	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A154-01A-11D-A10Y-09		178952085	19070345	7	66715										
PPID	0	genome.wustl.edu	37	chr4	159644428	159644428	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ggagggcttggcttggggggAcgggtgcgacatcttgactt	19	7	1	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	4	159644428	159644428	A	C	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	missense	c.13	p.S5A	0.189	superfamily_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	154	1	0.65	139	58	29.44	-	-	-	C	159644428	A	C	159644428	3	2	767	1	0	0	0	0	1	0	0	0	12398	275	10	5	1139	5	PPID	4	159644428	Missense_Mutation	SNP	A	TCGA-E2-A154-01A-11D-A10Y-09		159644428	31509848	8	66716										
PCDHGA7	0	genome.wustl.edu	37	chr5	140764680	140764680	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ttggcgaacgtgcccacctcGcactttgtgggcatggacgg	14	12	0	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	5	140764680	140764680	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	silent	c.2214	p.S738	0.173	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	74	0	0	52	48	47.52	-	-	-	A	140764680	G	A	140764680	2	1	767	1	0	0	0	0	0	0	0	1	11632	1074	38	1		1	PCDHGA7	5	140764680	Silent	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		140764680	40150580	9	66717										
C2	0	genome.wustl.edu	37	chr6	31896624	31896624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gaggatggcttcatattgcgGggctcgcctgtgcgtcagtg	16	9	2	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	31896624	31896624	G	A	SNP	C2	ENST00000299367	human	ensembl	69_37n	1	known	silent	c.372	p.R124	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP	pfam_VWF_A,pfam_Peptidase_S1_S6,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C2	HGNC	ENSG00000166278	170	0	0	110	112	50.45	-	-	-	A	31896624	G	A	31896624	2	1	767	1	0	0	0	0	0	0	0	1	2094	1219	43	4		4	C2	6	31896624	Silent	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		31896624	139218443	10	66718										
CGA	0	genome.wustl.edu	37	chr6	87796031	87796031	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	acgttcttttggaccaacatCgtcttcttggaccttagtgg	9	10	3	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	87796031	87796031	C	T	SNP	CGA	ENST00000369582	human	ensembl	69_37n	-1	known	silent	c.210	p.T70	0.987	pfam_Glyco_hormone,smart_Glyco_hormone,pfscan_Glyco_hormone,prints_Glyco_hormone	pfam_Glyco_hormone,smart_Glyco_hormone,pfscan_Glyco_hormone,prints_Glyco_hormone	-	no_errors	CGA	HGNC	ENSG00000135346	264	0	0	165	97	37.02	-	-	-	T	87796031	C	T	87796031	2	4	767	1	0	0	0	0	0	0	0	1	3324	871	31	1		1	CGA	6	87796031	Silent	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	55899407	87796031	83319036	11	66719										
SLC12A9	0	genome.wustl.edu	37	chr7	100456724	100456724	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ctgggcacgatcgtcgccgtCgcctacaccttcttcgtcta	9	16	2	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	7	100456724	100456724	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	69_37n	1	known	silent	c.918	p.V306	0.000	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828	195	1	0.51	319	40	11.14	-	-	-	T	100456724	C	T	100456724	2	4	767	1	0	0	0	0	0	0	0	1	14479	871	31	1		1	SLC12A9	7	100456724	Silent	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09		100456724	58681939	12	66720										
RP1	0	genome.wustl.edu	37	chr8	55533917	55533917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cgcggccctggctcagcagcCgggccattagcgcgcactca	13	17	2	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	55533917	55533917	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.391	p.R131W	1.000	superfamily_Doublecortin_dom	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	15	0	0	10	14	58.33	-	-	-	T	55533917	C	T	55533917	3	4	767	1	0	0	0	0	1	0	0	0	13618	643	23	1	393	1	RP1	8	55533917	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09		55533917	90830105	13	66721										
VPS13B	0	genome.wustl.edu	37	chr8	100883111	100883111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	caaacagccatgtcaaatatGtctggtaaaattattgagat	7	6	2	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	100883111	100883111	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.11566	p.V3856I	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	115	0	0	83	46	35.66	-	-	-	A	100883111	G	A	100883111	3	1	767	1	0	0	0	0	1	0	0	0	17287	1377	48	4	11994	4	VPS13B	8	100883111	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	45349194	100883111	45480911	14	66722										
KLHL38	0	genome.wustl.edu	37	chr8	124664638	124664638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	atagtccctcaactccaaggCacagagctccttcaggtcgg	9	14	2	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	124664638	124664638	C	T	SNP	KLHL38	ENST00000325995	human	ensembl	69_37n	-1	known	missense	c.529	p.A177T	0.311	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946	18	0	0	18	14	43.75	-	-	-	T	124664638	C	T	124664638	3	4	767	1	0	0	0	0	1	0	0	0	8443	710	25	4	1228	4	KLHL38	8	124664638	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	23781527	124664638	21699384	15	66723										
VPS28	0	genome.wustl.edu	37	chr8	145649475	145649475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cgggtgggaggtggctcatgCggtgcatggtctccatcagc	17	10	3	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	145649475	145649475	C	T	SNP	VPS28	ENST00000377348	human	ensembl	69_37n	-1	known	missense	c.497	p.R166H	0.996	pfam_VPS28,pirsf_VPS28	pfam_VPS28,pirsf_VPS28	-	no_errors	VPS28	HGNC	ENSG00000160948	29	0	0	35	30	46.15	-	-	-	T	145649475	C	T	145649475	3	4	767	1	0	0	0	0	1	0	0	0	17296	768	27	1	290	1	VPS28	8	145649475	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	20984837	145649475	714547	16	66724										
PGM5	0	genome.wustl.edu	37	chr9	70993224	70993224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cattctaacagccagccactGccctggaggaccagggggag	13	13	1	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	70993224	70993224	G	T	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.371	p.C124F	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	182	0	0	169	30	15.08	-	-	-	T	70993224	G	T	70993224	3	4	767	1	0	0	0	0	1	0	0	0	11875	1319	46	4	377	4	PGM5	9	70993224	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		70993224	70220207	17	66725										
C9orf9	0	genome.wustl.edu	37	chr9	135763881	135763881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ggagccgctcgtcctgcccaGgccatagggacccagcccag	13	17	0	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	135763881	135763881	G	A	SNP	C9orf9	ENST00000356311	human	ensembl	69_37n	1	known	silent	c.552	p.Q184	0.005	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698	13	0	0	12	4	25	-	-	-	A	135763881	G	A	135763881	2	1	767	1	0	0	0	0	0	0	0	1	2529	1015	35	4		4	C9orf9	9	135763881	Silent	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	64770657	135763881	5449550	18	66726										
DUPD1	0	genome.wustl.edu	37	chr10	76818229	76818229	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gcgacagcctcttggcagatGagtaggcattcttgaggctt	13	9	2	3			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	76818229	76818229	G	T	SNP	DUPD1	ENST00000338487	human	ensembl	69_37n	-1	known	nonsense	c.44	p.S15*	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUPD1	HGNC	ENSG00000188716	143	0	0	134	33	19.76	-	-	-	T	76818229	G	T	76818229	4	4	767	1	0	0	0	0	0	1	0	0	4839	1294	45	2	630	2	DUPD1	10	76818229	Nonsense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		76818229	58716518	19	66727										
SLIT1	0	genome.wustl.edu	37	chr10	98816176	98816176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gagaggttctgcaggtcctgGaaggcatcgggccggatgca	17	9	1	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	98816176	98816176	G	T	SNP	SLIT1	ENST00000266058	human	ensembl	69_37n	-1	known	missense	c.1203	p.F401L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EGF-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	213	0	0	153	123	44.57	-	-	-	T	98816176	G	T	98816176	3	4	767	1	0	0	0	0	1	0	0	0	14828	1165	41	2	3501	2	SLIT1	10	98816176	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	21997947	98816176	36718571	20	66728										
IFITM3	0	genome.wustl.edu	37	chr11	320790	320790	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ccactgttgacaggagagaaGaaggtttggacagtgtgatt	14	5	0	4			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	320790	320790	G	T	SNP	IFITM3	ENST00000399808	human	ensembl	69_37n	-1	known	missense	c.24	p.F8L	0.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM3	HGNC	ENSG00000142089	123	0	0	111	33	22.92	-	-	-	T	320790	G	T	320790	3	4	767	1	0	0	0	0	1	0	0	0	7582	933	33	2	385	2	IFITM3	11	320790	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		320790	134685726	21	66729										
OR5T2	0	genome.wustl.edu	37	chr11	56000198	56000198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	agcgatcataagccattgcaGccaagagaaagcattctgtg	10	9	2	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56000198	56000198	G	A	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	missense	c.464	p.A155V	0.957	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	268	0	0	187	52	21.76	-	-	-	A	56000198	G	A	56000198	3	1	767	1	0	0	0	0	1	0	0	0	11255	971	34	4	614	4	OR5T2	11	56000198	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	55679408	56000198	79006318	22	66730										
OR5AR1	0	genome.wustl.edu	37	chr11	56431680	56431680	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	agttactgtggttccaatatCatcaatcatttcttctgcga	6	9	5	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56431680	56431680	C	T	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	1	known	silent	c.519	p.I173	0.574	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	301	0	0	215	72	25.09	-	-	-	T	56431680	C	T	56431680	2	4	767	1	0	0	0	0	0	0	0	1	11218	816	29	2		2	OR5AR1	11	56431680	Silent	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	431482	56431680	78574836	23	66731										
SF1	0	genome.wustl.edu	37	chr11	64534720	64534720	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	caggcgtacttcccaggtacTgatcttgatggaaggaaaga	12	8	1	3			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	64534720	64534720	T	G	SNP	SF1	ENST00000486867	human	ensembl	69_37n	-1	putative	splice_site	c.506-2	e4-2	1.000	-	-	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SF1	HGNC	ENSG00000168066	145	0	0	121	51	29.65	-	-	-	G	64534720	T	G	64534720	5	3	767	1	0	0	0	0	0	0	1	0	14233	1580	55	5	719	5	SF1	11	64534720	Splice_Site	SNP	T	TCGA-E2-A154-01A-11D-A10Y-09	8103040	64534720	70471796	24	66732										
IRAK3	0	genome.wustl.edu	37	chr12	66641568	66641568	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tcaggtgtccttctcctctaTtcctggagaatgtaccaagt	8	11	3	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	12	66641568	66641568	T	G	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	1	known	missense	c.1408	p.F470V	0.716	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	261	1	0.38	107	121	53.07	-	-	-	G	66641568	T	G	66641568	3	3	767	1	0	0	0	0	1	0	0	0	7878	1493	52	5	1454	5	IRAK3	12	66641568	Missense_Mutation	SNP	T	TCGA-E2-A154-01A-11D-A10Y-09		66641568	67210327	25	66733										
FBXL3	0	genome.wustl.edu	37	chr13	77595895	77595895	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gaaggagattaccccaatcaCaagtctgagaatgctcattt	8	9	3	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	77595895	77595895	C	G	SNP	FBXL3	ENST00000355619	human	ensembl	69_37n	-1	known	missense	c.101	p.C34S	0.014	superfamily_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like	-	no_errors	FBXL3	HGNC	ENSG00000005812	181	0	0	199	33	14.22	-	-	-	G	77595895	C	G	77595895	3	3	767	1	0	0	0	0	1	0	0	0	5766	478	17	4	1201	4	FBXL3	13	77595895	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09		77595895	37573983	26	66734										
CLYBL	0	genome.wustl.edu	37	chr13	100518535	100518535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ccctggatattctctacgccCggcaaaagattgttgtcata	8	11	2	1			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	100518535	100518535	C	T	SNP	CLYBL	ENST00000339105	human	ensembl	69_37n	1	known	missense	c.676	p.R226W	1.000	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246	140	0	0	93	74	44.31	-	-	-	T	100518535	C	T	100518535	3	4	767	1	0	0	0	0	1	0	0	0	3603	643	23	1	698	1	CLYBL	13	100518535	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	22922640	100518535	14651343	27	66735										
CHD8	0	genome.wustl.edu	37	chr14	21859709	21859709	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cgaggggcatcctcacccacCagcaaagtaccatccacctt	7	17	1	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	21859709	21859709	C	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	silent	c.6978	p.L2326	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	86	0	0	90	18	16.67	-	-	-	A	21859709	C	A	21859709	2	1	767	1	0	0	0	0	0	0	0	1	3360	581	21	4		4	CHD8	14	21859709	Silent	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09		21859709	85489831	28	66736										
CMTM5	0	genome.wustl.edu	37	chr14	23848056	23848056	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ctggttgctctggttcatctGcttccactccctgggtagca	10	13	3	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	23848056	23848056	G	T	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	1	known	missense	c.458	p.C153F	0.009	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	21	0	0	11	9	45	-	-	-	T	23848056	G	T	23848056	3	4	767	1	0	0	0	0	1	0	0	0	3616	1334	46	4		4	CMTM5	14	23848056	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	1988347	23848056	83501484	29	66737										
MEGF8	0	genome.wustl.edu	37	chr19	42862378	42862378	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ttccgattccatgtggagctGgcggccccatcccccgagct	11	16	0	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	42862378	42862378	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	silent	c.5094	p.L1698	0.999	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	75	0	0	70	13	15.66	-	-	-	A	42862378	G	A	42862378	2	1	767	1	0	0	0	0	0	0	0	1	9534	1335	47	4		4	MEGF8	19	42862378	Silent	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		42862378	16266605	30	66738										
NOVA2	0	genome.wustl.edu	37	chr19	46457123	46457123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tcatcgcttgtgggatttctCggaccttctcggcaataaag	10	10	3	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	46457123	46457123	C	T	SNP	NOVA2	ENST00000263257	human	ensembl	69_37n	-1	known	missense	c.311	p.R104Q	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967	374	1	0.27	210	272	56.31	-	-	-	T	46457123	C	T	46457123	3	4	767	1	0	0	0	0	1	0	0	0	10627	884	31	1	1175	1	NOVA2	19	46457123	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	3594745	46457123	12671860	31	66739										
E2F1	0	genome.wustl.edu	37	chr20	32267640	32267640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	ggtgatgtcatagatgcgccGcttctgcaccttcagcacct	10	13	3	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	20	32267640	32267640	G	A	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	139	0	0	257	42	14	-	-	-	A	32267640	G	A	32267640	3	1	767	1	0	0	0	0	1	0	0	0	4901	1086	38	1	840	1	E2F1	20	32267640	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		32267640	30757880	32	66740										
DMD	0	genome.wustl.edu	37	chrX	31152232	31152232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	agcttacctcttgaactaggGaaggagttgttgagttgctc	12	7	1	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	31152232	31152232	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.11001	p.F3667L	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	246	0	0	252	121	32.35	-	-	-	T	31152232	G	T	31152232	3	4	767	1	0	0	0	0	1	0	0	0	4616	1165	41	2	154	2	DMD	23	31152232	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09		31152232	124118328	33	66741										
UBA1	0	genome.wustl.edu	37	chrX	47065655	47065655	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tgctccccacaggcatgtacAtggaccgccgctgtgtctac	10	15	1	0			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	47065655	47065655	A	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	missense	c.1750	p.M584L	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	59	0	0	33	34	50.75	-	-	-	T	47065655	A	T	47065655	3	4	767	1	0	0	0	0	1	0	0	0	16924	217	8	5	1808	5	UBA1	23	47065655	Missense_Mutation	SNP	A	TCGA-E2-A154-01A-11D-A10Y-09	15913423	47065655	108204905	34	66742										
CCNB3	0	genome.wustl.edu	37	chrX	50037884	50037884	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	cttctcaatgtcaacctgtcCagcccaagaaagaagccaat	6	13	2	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	50037884	50037884	C	G	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.226	p.Q76E	0.004	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	351	0	0	175	171	49.42	-	-	-	G	50037884	C	G	50037884	3	3	767	1	0	0	0	0	1	0	0	0	2943	595	21	4	236	4	CCNB3	23	50037884	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	2972229	50037884	105232676	35	66743										
SMC1A	0	genome.wustl.edu	37	chrX	53439174	53439174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tggctttgatgtactgaggcCgcttctggttcaattctgag	12	8	3	3			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	53439174	53439174	C	T	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	missense	c.884	p.R295Q	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	271	0	0	207	124	37.46	-	-	-	T	53439174	C	T	53439174	3	4	767	1	0	0	0	0	1	0	0	0	14870	652	23	1	2897	1	SMC1A	23	53439174	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	3401290	53439174	101831386	36	66744										
RNF113A	0	genome.wustl.edu	37	chrX	119005097	119005097	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	tccttgggcttcatgtatttCtgataattgttgattccccg	8	9	2	2			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	119005097	119005097	C	A	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.480	p.Q160H	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	216	0	0	228	36	13.64	-	-	-	A	119005097	C	A	119005097	3	1	767	1	0	0	0	0	1	0	0	0	13513	912	32	2	555	2	RNF113A	23	119005097	Missense_Mutation	SNP	C	TCGA-E2-A154-01A-11D-A10Y-09	65565923	119005097	36265463	37	66745										
OCRL	0	genome.wustl.edu	37	chrX	128692644	128692644	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0263157894736842	1	1	0.400695134061569	0	0.447835738068812	1	1	0	gaagacaatttttcttctatGaatttggacaagaaaataaa	6	4	2	3			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	128692644	128692644	G	T	SNP	OCRL	ENST00000371113	human	ensembl	69_37n	1	known	missense	c.474	p.M158I	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126	264	1	0.38	136	93	40.61	-	-	-	T	128692644	G	T	128692644	3	4	767	1	0	0	0	0	1	0	0	0	10896	1290	45	2	500	2	OCRL	23	128692644	Missense_Mutation	SNP	G	TCGA-E2-A154-01A-11D-A10Y-09	9687547	128692644	26577916	38	66746										
ZNF684	0	genome.wustl.edu	37	chr1	41006377	41006377	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gagaactatagaaacctcatCtcagtgggtaaggacaatga	10	7	2	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	41006377	41006377	C	T	SNP	ZNF684	ENST00000372699	human	ensembl	69_37n	1	known	silent	c.135	p.I45	0.970	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF684	HGNC	ENSG00000117010	436	0	0	306	165	35.03	-	-	-	T	41006377	C	T	41006377	2	4	768	1	0	0	0	0	0	0	0	1	18187	903	32	2		2	ZNF684	1	41006377	Silent	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		41006377	208244244	1	66747										
SGIP1	0	genome.wustl.edu	37	chr1	67206375	67206375	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	agagaatattgtggaagattCctgatatctctcagaagtca	9	6	3	4			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	67206375	67206375	C	A	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.2362	p.P788T	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	215	0	0	193	135	41.16	-	-	-	A	67206375	C	A	67206375	3	1	768	1	0	0	0	0	1	0	0	0	14294	855	30	2	2359	2	SGIP1	1	67206375	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	26199998	67206375	182044246	2	66748										
OTUD7B	0	genome.wustl.edu	37	chr1	149939428	149939428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tggagctggcgtgggagatgCccctagacaggcgtttttct	15	9	1	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	149939428	149939428	C	A	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.293	p.G98V	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	70	0	0	31	32	50.79	-	-	-	A	149939428	C	A	149939428	3	1	768	1	0	0	0	0	1	0	0	0	11392	739	26	4	2274	4	OTUD7B	1	149939428	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	82733053	149939428	99311193	3	66749										
ARHGEF11	0	genome.wustl.edu	37	chr1	156907126	156907126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gggccaggcttggaggagagCggctggggcgtcttggatca	20	8	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	156907126	156907126	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	missense	c.4355	p.R1452H	0.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	53	0	0	38	20	34.48	-	-	-	T	156907126	C	T	156907126	3	4	768	1	0	0	0	0	1	0	0	0	898	768	27	1	345	1	ARHGEF11	1	156907126	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	6967698	156907126	92343495	4	66750										
CD1A	0	genome.wustl.edu	37	chr1	158225973	158225973	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gcaaagtgctcaatcagaatCagcatgaaaatgacataaca	7	8	3	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	158225973	158225973	C	T	SNP	CD1A	ENST00000289429	human	ensembl	69_37n	1	known	nonsense	c.505	p.Q169*	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1A	HGNC	ENSG00000158477	229	0	0	116	75	39.27	-	-	-	T	158225973	C	T	158225973	4	4	768	1	0	0	0	0	0	1	0	0	3003	827	29	2	515	2	CD1A	1	158225973	Nonsense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	1318847	158225973	91024648	5	66751										
TROVE2	0	genome.wustl.edu	37	chr1	193045697	193045697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggaatctaggaaagatgactGctaattcagtacttgaacca	9	7	2	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	193045697	193045697	G	T	SNP	TROVE2	ENST00000367441	human	ensembl	69_37n	1	known	missense	c.868	p.A290S	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747	330	0	0	258	186	41.89	-	-	-	T	193045697	G	T	193045697	3	4	768	1	0	0	0	0	1	0	0	0	16672	1319	46	4	878	4	TROVE2	1	193045697	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	34819724	193045697	56204924	6	66752										
PLEKHA6	0	genome.wustl.edu	37	chr1	204214761	204214761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	acctctgtgcttggcggtgtCcgtgccccgggaggggttgt	17	11	1	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	204214761	204214761	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.2014	p.D672N	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	101	0	0	53	44	45.36	-	-	-	T	204214761	C	T	204214761	3	4	768	1	0	0	0	0	1	0	0	0	12134	855	30	2	1168	2	PLEKHA6	1	204214761	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	11169064	204214761	45035860	7	66753										
RYR2	0	genome.wustl.edu	37	chr1	237863760	237863760	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cagcatcagttcggagaagaCctaatatgtatgtaaattta	8	6	1	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	1	237863760	237863760	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.9354	p.D3118E	0.998	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	141	0	0	111	71	39.01	-	-	-	G	237863760	C	G	237863760	3	3	768	1	0	0	0	0	1	0	0	0	13855	506	18	4	9618	4	RYR2	1	237863760	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	33648999	237863760	11386861	8	66754										
NLRC4	0	genome.wustl.edu	37	chr2	32476278	32476278	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gccaggtatatccaggagttGatcacagagggtttcaaaaa	11	7	2	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	2	32476278	32476278	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	nonsense	c.655	p.Q219*	0.102	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	150	0	0	104	59	36.2	-	-	-	A	32476278	G	A	32476278	4	1	768	1	0	0	0	0	0	1	0	0	10541	1299	45	2	2443	2	NLRC4	2	32476278	Nonsense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		32476278	210723095	9	66755										
SATB2	0	genome.wustl.edu	37	chr2	200137283	200137283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cttctaaggagatctttgtgCgagaccggggctttttggca	13	8	2	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	2	200137283	200137283	C	T	SNP	SATB2	ENST00000260926	human	ensembl	69_37n	-1	known	missense	c.1853	p.R618H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042	150	1	0.66	65	56	46.28	-	-	-	T	200137283	C	T	200137283	3	4	768	1	0	0	0	0	1	0	0	0	13941	768	27	1	352	1	SATB2	2	200137283	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	167661005	200137283	43062090	10	66756										
ATIC	0	genome.wustl.edu	37	chr2	216209567	216209568	+	Frame_Shift_Del	DEL	CT	CT	-													0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gtcaagtacactcagtctaaCtctgtgtgctacgccaagaa							TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	2	216209567	216209568	CT	-	DEL	ATIC	ENST00000236959	human	ensembl	69_37n	1	known	frame_shift_del	c.1293_1294	p.S432fs	0.998:1.000	pfam_AICARFT_IMPCHas,superfamily_Cytidine_deaminase-like,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363	221	0	0	134	64	32.32	-	-	-	-	216209568	CT	-	216209567	7	5	768	1	0	1	0	1	0	0	0	0	1109	564	20	0	1343	0	ATIC	2	216209567	Frame_Shift_Del	DEL	CT	TCGA-E2-A155-01A-11D-A12B-09	16072284	216209567	26989806	11	66757										
GLB1L	0	genome.wustl.edu	37	chr2	220102662	220102662	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ttgtctctcatatttcgctcCacaacaccctggaacacctg	5	15	2	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	2	220102662	220102662	C	T	SNP	GLB1L	ENST00000295759	human	ensembl	69_37n	-1	known	silent	c.1359	p.V453	1.000	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L	HGNC	ENSG00000163521	175	0	0	159	62	27.93	-	-	-	T	220102662	C	T	220102662	2	4	768	1	0	0	0	0	0	0	0	1	6480	581	21	4		4	GLB1L	2	220102662	Silent	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	3893095	220102662	23096711	12	66758										
CRYBG3	0	genome.wustl.edu	37	chr3	97614915	97614915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gtagccctatcttgtctttcCggtacttacaagctgtgagt	9	10	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	3	97614915	97614915	C	T	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1843	p.R615W	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	326	0	0	260	139	34.66	-	-	-	T	97614915	C	T	97614915	3	4	768	1	0	0	0	0	1	0	0	0	3943	643	23	1	1877	1	CRYBG3	3	97614915	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		97614915	100407515	13	66759										
RUVBL1	0	genome.wustl.edu	37	chr3	127800192	127800192	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tcgacatgctctttctcaatGctgtccttcccgttgatttt	6	12	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	3	127800192	127800192	G	A	SNP	RUVBL1	ENST00000322623	human	ensembl	69_37n	-1	known	silent	c.1272	p.S424	0.995	NULL	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_NA-bd_OB-fold-like,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792	446	0	0	265	153	36.52	-	-	-	A	127800192	G	A	127800192	2	1	768	1	0	0	0	0	0	0	0	1	13838	1310	46	4		4	RUVBL1	3	127800192	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	30185277	127800192	70222238	14	66760										
ATR	0	genome.wustl.edu	37	chr3	142176483	142176483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ctgatcacgcatcagcctcaTtgtaacttcacatgctcttc	5	14	5	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	3	142176483	142176483	T	C	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.7618	p.M2540V	0.069	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	245	0	0	168	113	40.21	-	-	-	C	142176483	T	C	142176483	3	2	768	1	0	0	0	0	1	0	0	0	1208	1493	52	5	328	5	ATR	3	142176483	Missense_Mutation	SNP	T	TCGA-E2-A155-01A-11D-A12B-09	14376291	142176483	55845947	15	66761										
NAALADL2	0	genome.wustl.edu	37	chr3	175042047	175042047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ccaaagactgtgaatcctagCcatgataccttcatggtgtc	8	11	1	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	3	175042047	175042047	C	G	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.1023	p.S341R	0.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	386	0	0	271	189	41.09	-	-	-	G	175042047	C	G	175042047	3	3	768	1	0	0	0	0	1	0	0	0	10202	738	26	4	1041	4	NAALADL2	3	175042047	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	32865564	175042047	22980383	16	66762										
DGKG	0	genome.wustl.edu	37	chr3	185990120	185990120	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	acacacagcgttcgtggacaGtgtatttacagtctgaaaag	10	8	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	3	185990120	185990120	G	C	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	missense	c.923	p.T308S	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	328	0	0	176	134	43.09	-	-	-	C	185990120	G	C	185990120	3	2	768	1	0	0	0	0	1	0	0	0	4505	1029	36	4	1512	4	DGKG	3	185990120	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	10948073	185990120	12032310	17	66763										
CRMP1	0	genome.wustl.edu	37	chr4	5837643	5837643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	caaataggccaggacttaccGacttgtgacttttggctgtt	10	9	0	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	4	5837643	5837643	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.1622	p.S541L	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	144	0	0	81	56	40.88	-	-	-	A	5837643	G	A	5837643	3	1	768	1	0	0	0	0	1	0	0	0	3920	1072	37	1	454	1	CRMP1	4	5837643	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		5837643	185316633	18	66764										
MRFAP1L1	0	genome.wustl.edu	37	chr4	6711321	6711321	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tccagcacctccacttcctcAggcgcttccacctcgtctat	5	19	2	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	4	6711321	6711321	A	G	SNP	MRFAP1L1	ENST00000320848	human	ensembl	69_37n	-1	known	silent	c.36	p.P12	0.007	NULL	NULL	-	no_errors	MRFAP1L1	HGNC	ENSG00000178988	75	0	0	64	30	31.91	-	-	-	G	6711321	A	G	6711321	2	3	768	1	0	0	0	0	0	0	0	1	9834	175	7	5		5	MRFAP1L1	4	6711321	Silent	SNP	A	TCGA-E2-A155-01A-11D-A12B-09	873678	6711321	184442955	19	66765										
MFAP3L	0	genome.wustl.edu	37	chr4	170912804	170912804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggactgcgggtgaactgacaCcttgatggcaatttgctgag	14	8	0	4			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	4	170912804	170912804	C	T	SNP	MFAP3L	ENST00000361618	human	ensembl	69_37n	-1	known	missense	c.955	p.V319M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3L	HGNC	ENSG00000198948	208	0	0	125	94	42.92	-	-	-	T	170912804	C	T	170912804	3	4	768	1	0	0	0	0	1	0	0	0	9587	507	18	4	278	4	MFAP3L	4	170912804	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	164201483	170912804	20241472	20	66766										
CMYA5	0	genome.wustl.edu	37	chr5	79028598	79028598	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tccacctgcactagcattttCagctttgtcagaagaaatta	6	10	2	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	5	79028598	79028598	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.4010	p.S1337L	0.966	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	128	0	0	21	68	76.4	-	-	-	T	79028598	C	T	79028598	3	4	768	1	0	0	0	0	1	0	0	0	3620	838	29	2	4016	2	CMYA5	5	79028598	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		79028598	101886662	21	66767										
GIN1	0	genome.wustl.edu	37	chr5	102432359	102432359	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tccactttctgtaatatagtCtatgacacaaggaccaaccc	5	12	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	5	102432359	102432359	C	G	SNP	GIN1	ENST00000399004	human	ensembl	69_37n	-1	known	missense	c.1180	p.D394H	1.000	NULL	pfam_Integrase_cat-core,pfam_Znf_H2C2_histone_UAS-bd,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	GIN1	HGNC	ENSG00000145723	482	0	0	97	241	71.09	-	-	-	G	102432359	C	G	102432359	3	3	768	1	0	0	0	0	1	0	0	0	6438	913	32	2	396	2	GIN1	5	102432359	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	23403761	102432359	78482901	22	66768										
HDAC3	0	genome.wustl.edu	37	chr5	141005299	141005299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggtgctgacatctggatgaaGtgtgaagtctggggcaaagt	16	5	2	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	5	141005299	141005299	G	A	SNP	HDAC3	ENST00000305264	human	ensembl	69_37n	-1	known	missense	c.1012	p.L338F	1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC3	HGNC	ENSG00000171720	593	1	0.17	112	238	67.81	-	-	-	A	141005299	G	A	141005299	3	1	768	1	0	0	0	0	1	0	0	0	7059	1029	36	4	286	4	HDAC3	5	141005299	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	38572940	141005299	39909961	23	66769										
AKAP9	0	genome.wustl.edu	37	chr7	91603204	91603204	+	Frame_Shift_Del	DEL	T	T	-													0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tctcagagagtagaatcaacTgtgattcctgaatctacaat							TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	7	91603204	91603204	T	-	DEL	AKAP9	ENST00000359028	human	ensembl	69_37n	1	known	frame_shift_del	c.264	p.V89fs	0.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	144	0	0	94	56	34.78	-	-	-	-	91603204	T	-	91603204	7	5	768	1	0	1	0	1	0	0	0	0	459	1567	55	0	234	0	AKAP9	7	91603204	Frame_Shift_Del	DEL	T	TCGA-E2-A155-01A-11D-A12B-09		91603204	67535459	24	66770										
LYN	0	genome.wustl.edu	37	chr8	56912024	56912024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ctccagaagcaatcaactttGgatgtttcactattaagtct	6	9	3	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	8	56912024	56912024	G	A	SNP	LYN	ENST00000519728	human	ensembl	69_37n	1	known	missense	c.1252	p.G418R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	429	0	0	327	173	34.6	-	-	-	A	56912024	G	A	56912024	3	1	768	1	0	0	0	0	1	0	0	0	9174	1349	47	4	1294	4	LYN	8	56912024	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		56912024	89451998	25	66771										
PHYH	0	genome.wustl.edu	37	chr10	13325695	13325695	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	aatgtgaatgcttaccttccGgaatccctgggttttattct	8	9	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	10	13325695	13325695	G	T	SNP	PHYH	ENST00000263038	human	ensembl	69_37n	-1	known	silent	c.823	p.R275	1.000	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537	177	0	0	84	60	41.38	-	-	-	T	13325695	G	T	13325695	2	4	768	1	0	0	0	0	0	0	0	1	11938	1115	39	3		3	PHYH	10	13325695	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		13325695	122209052	26	66772										
TMEM80	0	genome.wustl.edu	37	chr11	700171	700171	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gttccccttcaaatgctgttTtatctcagcggaacgtacta	7	11	2	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	11	700171	700171	T	C	SNP	TMEM80	ENST00000397510	human	ensembl	69_37n	1	known	silent	c.144	p.F48	0.088	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM80	HGNC	ENSG00000177042	274	0	0	161	103	39.02	-	-	-	C	700171	T	C	700171	2	2	768	1	0	0	0	0	0	0	0	1	16299	1838	64	5		5	TMEM80	11	700171	Silent	SNP	T	TCGA-E2-A155-01A-11D-A12B-09		700171	134306345	27	66773										
KIAA0528	0	genome.wustl.edu	37	chr12	22677465	22677465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	atgcccttggtgtgcgaattCgatcaatccactgatattct	8	10	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	12	22677465	22677465	C	T	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.542	p.R181Q	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	448	0	0	83	207	71.38	-	-	-	T	22677465	C	T	22677465	3	4	768	1	0	0	0	0	1	0	0	0	8234	884	31	1	2540	1	KIAA0528	12	22677465	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		22677465	111174430	28	66774										
RBM19	0	genome.wustl.edu	37	chr12	114380175	114380175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cgttgtctatgagaaaacgcCgcacttcctggacgagctgg	12	11	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	12	114380175	114380175	C	T	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.1691	p.R564Q	0.294	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	67	0	0	31	12	27.91	-	-	-	T	114380175	C	T	114380175	3	4	768	1	0	0	0	0	1	0	0	0	13204	652	23	1	1235	1	RBM19	12	114380175	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	91702710	114380175	19471720	29	66775										
OR11G2	0	genome.wustl.edu	37	chr14	20665593	20665593	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggtgcttttacaattcacagGcacatgaaaatcttcaacag	7	9	3	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	14	20665593	20665593	G	A	SNP	OR11G2	ENST00000357366	human	ensembl	69_37n	1	known	silent	c.99	p.R33	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	135	0	0	36	63	63.64	-	-	-	A	20665593	G	A	20665593	2	1	768	1	0	0	0	0	0	0	0	1	10998	1194	42	4		4	OR11G2	14	20665593	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		20665593	86683947	30	66776										
C14orf80	0	genome.wustl.edu	37	chr14	105965157	105965157	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gcagctgtggtgatcaggacGctgaggagccaggaggcctg	18	9	1	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	14	105965157	105965157	G	T	SNP	C14orf80	ENST00000392523	human	ensembl	69_37n	1	known	silent	c.1362	p.T454	0.000	NULL	NULL	-	no_errors	C14orf80	HGNC	ENSG00000185347	45	0	0	6	8	57.14	-	-	-	T	105965157	G	T	105965157	2	4	768	1	0	0	0	0	0	0	0	1	1793	1074	38	3		3	C14orf80	14	105965157	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	85299564	105965157	1384383	31	66777										
TTBK2	0	genome.wustl.edu	37	chr15	43122137	43122137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggatagaaaaggtccctaccGgtttgatgtctcgatgcaag	12	8	1	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	15	43122137	43122137	G	A	SNP	TTBK2	ENST00000267890	human	ensembl	69_37n	-1	known	missense	c.431	p.P144L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881	278	0	0	152	126	45.16	-	-	-	A	43122137	G	A	43122137	3	1	768	1	0	0	0	0	1	0	0	0	16774	1130	39	1	3347	1	TTBK2	15	43122137	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		43122137	59409255	32	66778										
MRPS11	0	genome.wustl.edu	37	chr15	89020270	89020270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cgagttgtggtgaaaggcctGgggccaggacgcttggtaag	18	7	0	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	15	89020270	89020270	G	A	SNP	MRPS11	ENST00000325844	human	ensembl	69_37n	1	known	silent	c.462	p.L154	1.000	pfam_Ribosomal_S11	pfam_Ribosomal_S11	-	no_errors	MRPS11	HGNC	ENSG00000181991	346	0	0	184	118	39.07	-	-	-	A	89020270	G	A	89020270	2	1	768	1	0	0	0	0	0	0	0	1	9894	1335	47	4		4	MRPS11	15	89020270	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	45898133	89020270	13511122	33	66779										
OR4F6	0	genome.wustl.edu	37	chr15	102346324	102346324	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	aagcctctccactacctgacCatcatgaacccacaaaggtg	6	15	2	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	15	102346324	102346324	C	T	SNP	OR4F6	ENST00000328882	human	ensembl	69_37n	1	known	silent	c.402	p.T134	0.070	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140	350	0	0	395	160	28.78	-	-	-	T	102346324	C	T	102346324	2	4	768	1	0	0	0	0	0	0	0	1	11139	581	21	4		4	OR4F6	15	102346324	Silent	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	13326054	102346324	185068	34	66780										
OR4F15	0	genome.wustl.edu	37	chr15	102358597	102358597	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tggctaacctctcaatcattGatatggcattttgctcaatt	6	9	3	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	15	102358597	102358597	G	A	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	1	known	missense	c.208	p.D70N	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	449	0	0	250	198	44.2	-	-	-	A	102358597	G	A	102358597	3	1	768	1	0	0	0	0	1	0	0	0	11134	1290	45	2	210	2	OR4F15	15	102358597	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	12273	102358597	172795	35	66781										
WDR90	0	genome.wustl.edu	37	chr16	708527	708527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	aagagcactgtgttccagctGcccggtgtccaccctgagcc	11	15	0	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	16	708527	708527	G	A	SNP	WDR90	ENST00000549091	human	ensembl	69_37n	1	novel	silent	c.2769	p.L923	0.178	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996	30	0	0	12	10	45.45	-	-	-	A	708527	G	A	708527	2	1	768	1	0	0	0	0	0	0	0	1	17434	1306	46	4		4	WDR90	16	708527	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09		708527	89646226	36	66782										
ZNF597	0	genome.wustl.edu	37	chr16	3486606	3486606	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gcacttatggggcctttcctCtgtatgaatgttctgatggg	12	8	2	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	16	3486606	3486606	C	A	SNP	ZNF597	ENST00000301744	human	ensembl	69_37n	-1	known	nonsense	c.1093	p.E365*	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981	249	0	0	121	78	38.81	-	-	-	A	3486606	C	A	3486606	4	1	768	1	0	0	0	0	0	1	0	0	18123	922	32	2	185	2	ZNF597	16	3486606	Nonsense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	2778079	3486606	86868147	37	66783										
ZNF646	0	genome.wustl.edu	37	chr16	31092215	31092215	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	acaacagagacaacagctctCagctgcagccagggagccac	10	14	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	16	31092215	31092215	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	1	known	nonsense	c.4570	p.Q1524*	0.273	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	89	0	0	36	32	47.06	-	-	-	T	31092215	C	T	31092215	4	4	768	1	0	0	0	0	0	1	0	0	18158	827	29	2	4572	2	ZNF646	16	31092215	Nonsense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	27605609	31092215	59262538	38	66784										
TP53	0	genome.wustl.edu	37	chr17	7579591	7579591	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gcttgggacggcaagggggaCtgtagatgggtgaaaagagc	19	5	0	3			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	17	7579591	7579591	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.97-1	e3-1	0.023	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	88	0	0	8	39	82.98	-	-	-	G	7579591	C	G	7579591	5	3	768	1	0	0	0	0	0	0	1	0	16477	579	20	4	1206	4	TP53	17	7579591	Splice_Site	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		7579591	73615619	39	66785										
PIPOX	0	genome.wustl.edu	37	chr17	27380585	27380585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ttggaccaaccagctcctccGtcccctgggcattgagatgc	10	15	0	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	17	27380585	27380585	G	A	SNP	PIPOX	ENST00000323372	human	ensembl	69_37n	1	known	missense	c.632	p.R211H	0.004	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	-	no_errors	PIPOX	HGNC	ENSG00000179761	107	0	0	52	43	45.26	-	-	-	A	27380585	G	A	27380585	3	1	768	1	0	0	0	0	1	0	0	0	12017	1145	40	1	646	1	PIPOX	17	27380585	Missense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	19800994	27380585	53814625	40	66786										
USP36	0	genome.wustl.edu	37	chr17	76831512	76831512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ctcccacctcagagacagtcGctccgtggggaaaagcactt	10	14	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	17	76831512	76831512	G	A	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	nonsense	c.325	p.R109*	0.999	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	107	0	0	57	36	38.3	-	-	-	A	76831512	G	A	76831512	4	1	768	1	0	0	0	0	0	1	0	0	17164	1095	38	1	3114	1	USP36	17	76831512	Nonsense_Mutation	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	49450927	76831512	4363698	41	66787										
DSC2	0	genome.wustl.edu	37	chr18	28654837	28654837	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	tgttatcattcacgtcttgaAgtataatgcccagtgtcccc	7	11	3	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	18	28654837	28654837	A	G	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.1700	p.L567P	0.860	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmo_cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	468	0	0	291	195	40.04	-	-	-	G	28654837	A	G	28654837	3	3	768	1	0	0	0	0	1	0	0	0	4801	72	3	5	1065	5	DSC2	18	28654837	Missense_Mutation	SNP	A	TCGA-E2-A155-01A-11D-A12B-09		28654837	49422411	42	66788										
KCNG2	0	genome.wustl.edu	37	chr18	77659086	77659086	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cctgttcgtgctggagaccgTgtgcgtggcctggttctcct	14	12	1	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	18	77659086	77659086	T	C	SNP	KCNG2	ENST00000316249	human	ensembl	69_37n	1	known	missense	c.671	p.V224A	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342	41	0	0	17	9	34.62	-	-	-	C	77659086	T	C	77659086	3	2	768	1	0	0	0	0	1	0	0	0	8082	1696	59	5	677	5	KCNG2	18	77659086	Missense_Mutation	SNP	T	TCGA-E2-A155-01A-11D-A12B-09	49004249	77659086	418162	43	66789										
FUT5	0	genome.wustl.edu	37	chr19	5866890	5866890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ggggcccagcaccacgggcaCggcccaggcctccagggcgt	16	17	0	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	19	5866890	5866890	C	T	SNP	FUT5	ENST00000252675	human	ensembl	69_37n	-1	known	missense	c.847	p.V283M	0.993	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	53	0	0	22	14	37.84	-	-	-	T	5866890	C	T	5866890	3	4	768	1	0	0	0	0	1	0	0	0	6156	536	19	1	281	1	FUT5	19	5866890	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		5866890	53262093	44	66790										
MLL4	0	genome.wustl.edu	37	chr19	36211899	36211899	+	Frame_Shift_Del	DEL	C	C	-													0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cggcgatttatggatgaagaCccccccaaacccccaaaggt							TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	19	36211899	36211899	C	-	DEL	MLL4	ENST00000222270	human	ensembl	69_37n	1	known	frame_shift_del	c.1650	p.K553fs	0.252	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	98	0	0	60	38	38.38	-	-	-	-	36211899	C	-	36211899	7	5	768	1	0	1	0	1	0	0	0	0	9694	506	18	0	1660	0	MLL4	19	36211899	Frame_Shift_Del	DEL	C	TCGA-E2-A155-01A-11D-A12B-09	30345009	36211899	22917084	45	66791										
PSG3	0	genome.wustl.edu	37	chr19	43233453	43233453	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gctggtgggttagagtccgcGaagcaggacaagtagaggtt	17	6	0	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	19	43233453	43233453	G	A	SNP	PSG3	ENST00000327495	human	ensembl	69_37n	-1	known	silent	c.1065	p.F355	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG3	HGNC	ENSG00000221826	495	0	0	414	284	40.63	-	-	-	A	43233453	G	A	43233453	2	1	768	1	0	0	0	0	0	0	0	1	12736	1049	37	1		1	PSG3	19	43233453	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	7021554	43233453	15895530	46	66792										
HIF3A	0	genome.wustl.edu	37	chr19	46825069	46825069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	gatccttgccttcctgcaccCgccttccctgagcgaggctg	10	17	0	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	19	46825069	46825069	C	T	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.1181	p.P394L	0.991	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	30	0	0	24	9	27.27	-	-	-	T	46825069	C	T	46825069	3	4	768	1	0	0	0	0	1	0	0	0	7156	652	23	1	1243	1	HIF3A	19	46825069	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	3591616	46825069	12303914	47	66793										
ZNF217	0	genome.wustl.edu	37	chr20	52193283	52193283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cacacttggcctgtatctgcAgtcagctgcggtctccgttt	10	13	3	0			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	20	52193283	52193283	A	G	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.2020	p.C674R	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	228	0	0	169	122	41.92	-	-	-	G	52193283	A	G	52193283	3	3	768	1	0	0	0	0	1	0	0	0	17868	188	7	5	1134	5	ZNF217	20	52193283	Missense_Mutation	SNP	A	TCGA-E2-A155-01A-11D-A12B-09		52193283	10832237	48	66794										
ARHGAP6	0	genome.wustl.edu	37	chrX	11162146	11162146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	ctttcccttgactttgacgaCgacaagtggcccaccagcat	8	14	0	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	X	11162146	11162146	C	T	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	silent	c.2130	p.S710	0.173	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	151	0	0	24	53	68.83	-	-	-	T	11162146	C	T	11162146	2	4	768	1	0	0	0	0	0	0	0	1	889	523	19	1		1	ARHGAP6	23	11162146	Silent	SNP	C	TCGA-E2-A155-01A-11D-A12B-09		11162146	144108414	49	66795										
MTMR8	0	genome.wustl.edu	37	chrX	63488612	63488612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	cccgtagcctcaaaggtgcaCatgtctccagagatgcccat	9	14	2	1			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	X	63488612	63488612	C	T	SNP	MTMR8	ENST00000374852	human	ensembl	69_37n	-1	known	missense	c.1920	p.M640I	0.000	NULL	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043	256	0	0	44	132	75	-	-	-	T	63488612	C	T	63488612	3	4	768	1	0	0	0	0	1	0	0	0	10021	478	17	4	198	4	MTMR8	23	63488612	Missense_Mutation	SNP	C	TCGA-E2-A155-01A-11D-A12B-09	52326466	63488612	91781948	50	66796										
CENPI	0	genome.wustl.edu	37	chrX	100382636	100382636	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.156862745098039	8	0.40099159956838	1.53103448275862	1.37793103448276	1.55572858731924	0.0152200740436034	0.179340149574026	0	agcttcccccaacttttacaGaacatccattgcttagaggt	6	12	0	2			TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a966904f-e8dd-473c-8626-84c25d7e0d6c	ff422b83-8a29-41b3-8e73-2909fe3521da	X	100382636	100382636	G	A	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	silent	c.1056	p.Q352	0.868	pfam_Centromere_CenpI	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	449	0	0	72	201	73.36	-	-	-	A	100382636	G	A	100382636	2	1	768	1	0	0	0	0	0	0	0	1	3262	933	33	2		2	CENPI	23	100382636	Silent	SNP	G	TCGA-E2-A155-01A-11D-A12B-09	36894024	100382636	54887924	51	66797										
TCEB3	0	genome.wustl.edu	37	chr1	24078169	24078170	+	Frame_Shift_Ins	INS	-	-	C													0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	aaggagcaggagacctgttgINScccaaggtaaaagagaaggg							TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	1	24078169	24078170	-	C	INS	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	frame_shift_ins	c.1152_1153	p.K385fs	0.000:0.464	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	142	0	0	105	61	36.75	-	-	-	C	24078170	-	C	24078169	7	5	769	1	0	1	1	0	0	0	0	0	15776	1310	46	0	1166	0	TCEB3	1	24078169	Frame_Shift_Ins	INS	-	TCGA-E2-A156-01A-11D-A12B-09		24078169	225172452	1	66798										
TTN	0	genome.wustl.edu	37	chr2	179514309	179514310	+	Frame_Shift_Ins	INS	-	-	TG													0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	ctggtgtttctggcttcttaINSacagttgggaccttcttcac							TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	2	179514309	179514310	-	TG	INS	TTN	ENST00000589042	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.39945_39944	p.K13316fs	0.948:0.886	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	14	0	0	1	2	66.67	-	-	-	TG	179514310	-	TG	179514309	7	5	769	1	0	1	1	0	0	0	0	0	16832	377	13	0		0	TTN	2	179514309	Frame_Shift_Ins	INS	-	TCGA-E2-A156-01A-11D-A12B-09		179514309	63685064	2	66799										
HDLBP	0	genome.wustl.edu	37	chr2	242202328	242202328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	tgtattttctctcctccaggGgtacatggaacacctgctca	8	12	2	0			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	2	242202328	242202328	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.248	p.P83L	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	410	0	0	304	222	42.05	-	-	-	A	242202328	G	A	242202328	3	1	769	1	0	0	0	0	1	0	0	0	7076	1232	43	4	3654	4	HDLBP	2	242202328	Missense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09	62688019	242202328	997045	3	66800										
TRIM71	0	genome.wustl.edu	37	chr3	32933232	32933232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	ggcagatggaccgcccttccGgcatcgccatcacccccgac	10	19	1	1			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	3	32933232	32933232	G	A	SNP	TRIM71	ENST00000383763	human	ensembl	69_37n	1	known	missense	c.2536	p.G846S	1.000	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557	44	0	0	48	28	35.9	-	-	-	A	32933232	G	A	32933232	3	1	769	1	0	0	0	0	1	0	0	0	16640	1116	39	1	2550	1	TRIM71	3	32933232	Missense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09		32933232	165089198	4	66801										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	265	0	0	25	240	90.23	-	-	-	A	178936082	G	A	178936082	3	1	769	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09	146002850	178936082	19086348	5	66802										
DSPP	0	genome.wustl.edu	37	chr4	88537151	88537151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	4	88537151	88537151	G	A	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.3337	p.D1113N	0.494	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	55	0	0	44	6	12	-	-	-	A	88537151	G	A	88537151	3	1	769	1	0	0	0	0	1	0	0	0	4817	1058	37	1	3351	1	DSPP	4	88537151	Missense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09		88537151	102617125	6	66803										
MAP3K1	0	genome.wustl.edu	37	chr5	56168483	56168483	+	Frame_Shift_Del	DEL	G	G	-													0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	ttcaggggcagaagagtgtaGaagaaatagagaacctttaa							TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	5	56168483	56168483	G	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1439	p.R480fs	1.000	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	264	0	0	95	58	36.48	-	-	-	-	56168483	G	-	56168483	7	5	769	1	0	1	0	1	0	0	0	0	9314	942	33	0	1469	0	MAP3K1	5	56168483	Frame_Shift_Del	DEL	G	TCGA-E2-A156-01A-11D-A12B-09		56168483	124746777	7	66804										
ADAM19	0	genome.wustl.edu	37	chr5	156945842	156945842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	cccccttacctctaaataatCagccacgaggtaaagctcca	5	15	2	0			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	5	156945842	156945842	C	G	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	missense	c.661	p.D221H	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	325	0	0	215	132	38.04	-	-	-	G	156945842	C	G	156945842	3	3	769	1	0	0	0	0	1	0	0	0	240	826	29	2	2169	2	ADAM19	5	156945842	Missense_Mutation	SNP	C	TCGA-E2-A156-01A-11D-A12B-09	100777359	156945842	23969418	8	66805										
DSP	0	genome.wustl.edu	37	chr6	7583485	7583485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	cttggacaaactattgaaggGgaagaagtcagtggaagaag	14	4	1	3			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	6	7583485	7583485	G	T	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.5990	p.G1997V	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	216	0	0	143	92	39.15	-	-	-	T	7583485	G	T	7583485	3	4	769	1	0	0	0	0	1	0	0	0	4816	1232	43	4	6084	4	DSP	6	7583485	Missense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09		7583485	163531582	9	66806										
HSF1	0	genome.wustl.edu	37	chr8	145535048	145535048	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	ctggtgcagtcaaaccggatCctgggggtgaagagaaagat	15	7	1	3			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	8	145535048	145535048	C	G	SNP	HSF1	ENST00000528838	human	ensembl	69_37n	1	known	missense	c.606	p.I202M	1.000	NULL	pfam_Vert_HS_TF,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122	92	0	0	49	37	43.02	-	-	-	G	145535048	C	G	145535048	3	3	769	1	0	0	0	0	1	0	0	0	7446	845	30	2	628	2	HSF1	8	145535048	Missense_Mutation	SNP	C	TCGA-E2-A156-01A-11D-A12B-09		145535048	828974	10	66807										
CEP78	0	genome.wustl.edu	37	chr9	80856675	80856675	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	caacttcacaggatgtaatcTgacatggcagggagcagatc	11	9	2	2			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	9	80856675	80856675	T	C	SNP	CEP78	ENST00000376597	human	ensembl	69_37n	1	known	missense	c.563	p.L188P	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	247	0	0	268	60	18.24	-	-	-	C	80856675	T	C	80856675	3	2	769	1	0	0	0	0	1	0	0	0	3291	1580	55	5	577	5	CEP78	9	80856675	Missense_Mutation	SNP	T	TCGA-E2-A156-01A-11D-A12B-09		80856675	60356756	11	66808										
ZNF215	0	genome.wustl.edu	37	chr11	6964815	6964815	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	catttgagagccttaagttgGagagtaagaaaaaaagatgg	12	3	0	4			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	11	6964815	6964815	G	T	SNP	ZNF215	ENST00000278319	human	ensembl	69_37n	1	known	nonsense	c.655	p.E219*	0.009	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054	404	0	0	225	112	33.23	-	-	-	T	6964815	G	T	6964815	4	4	769	1	0	0	0	0	0	1	0	0	17867	1175	41	2	669	2	ZNF215	11	6964815	Nonsense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09		6964815	128041701	12	66809										
DAK	0	genome.wustl.edu	37	chr11	61105416	61105416	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	tcactcctcccttgcagaccTccaagaagctggtgaactcg	8	15	1	3			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	11	61105416	61105416	T	A	SNP	DAK	ENST00000394900	human	ensembl	69_37n	1	known	missense	c.7	p.S3T	0.974	NULL	pfam_Dak1,pfam_Dak2,superfamily_Dak2,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	105	0	0	81	51	38.64	-	-	-	A	61105416	T	A	61105416	3	1	769	1	0	0	0	0	1	0	0	0	4260	1551	54	5	13	5	DAK	11	61105416	Missense_Mutation	SNP	T	TCGA-E2-A156-01A-11D-A12B-09	54140601	61105416	73901100	13	66810										
FMN1	0	genome.wustl.edu	37	chr15	33256405	33256405	+	Frame_Shift_Del	DEL	T	T	-													0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	aatactcaaattcactggggTcccgaatgtcaggttcttct							TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	15	33256405	33256405	T	-	DEL	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	frame_shift_del	c.2372	p.D791fs	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	562	0	0	277	186	38.11	-	-	-	-	33256405	T	-	33256405	7	5	769	1	0	1	0	1	0	0	0	0	5995	1667	58	0	1270	0	FMN1	15	33256405	Frame_Shift_Del	DEL	T	TCGA-E2-A156-01A-11D-A12B-09		33256405	69274987	14	66811										
CTCF	0	genome.wustl.edu	37	chr16	67644796	67644796	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.133333333333333	2	0.607849045757482	1.8974358974359	2.84615384615385	1.42307692307692	1	1	0	aaacttttattaaaggaaagGagagaaagacttaccagaga	9	4	0	3			TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	16	67644796	67644796	G	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	nonsense	c.61	p.E21*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	74	0	0	5	31	86.11	-	-	-	T	67644796	G	T	67644796	4	4	769	1	0	0	0	0	0	1	0	0	4032	1175	41	2	63	2	CTCF	16	67644796	Nonsense_Mutation	SNP	G	TCGA-E2-A156-01A-11D-A12B-09		67644796	22709957	15	66812										
MASP2	0	genome.wustl.edu	37	chr1	11107016	11107016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ggtgaagtagaggcgcaggcGgtagccggggggtgcagtca	21	7	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	11107016	11107016	G	A	SNP	MASP2	ENST00000400897	human	ensembl	69_37n	-1	known	missense	c.166	p.R56C	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	54	0	0	45	9	16.36	-	-	-	A	11107016	G	A	11107016	3	1	770	1	0	0	0	0	1	0	0	0	9394	1116	39	1	1952	1	MASP2	1	11107016	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		11107016	238143605	1	66813										
TMEM51	0	genome.wustl.edu	37	chr1	15541910	15541910	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ccgacaggcgctgggcctcaCgcccaggaggaagacaggtg	16	13	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	15541910	15541910	C	A	SNP	TMEM51	ENST00000303840	human	ensembl	69_37n	1	known	missense	c.327	p.H109Q	0.000	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729	14	0	0	7	14	66.67	-	-	-	A	15541910	C	A	15541910	3	1	770	1	0	0	0	0	1	0	0	0	16272	535	19	3	329	3	TMEM51	1	15541910	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	4434894	15541910	233708711	2	66814										
LUZP1	0	genome.wustl.edu	37	chr1	23419726	23419727	+	Frame_Shift_Del	DEL	TA	TA	-													0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgtttcttgatttgtagcttTatctcctccagttggctggc							TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	23419726	23419727	TA	-	DEL	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	frame_shift_del	c.1029_1028	p.I343fs	0.998:1.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	678	0	0	394	297	42.98	-	-	-	-	23419727	TA	-	23419726	7	5	770	1	0	1	0	1	0	0	0	0	9152	1744	61	0	2209	0	LUZP1	1	23419726	Frame_Shift_Del	DEL	TA	TCGA-E2-A158-01A-11D-A12B-09	7877816	23419726	225830895	3	66815										
CSMD2	0	genome.wustl.edu	37	chr1	34254306	34254306	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gagatccgggaccgatgtacCtgtcaggctggcaggagaga	16	9	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	34254306	34254306	C	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.1558	p.G520C	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	234	0	0	252	113	30.96	-	-	-	A	34254306	C	A	34254306	3	1	770	1	0	0	0	0	1	0	0	0	3977	681	24	4	9257	4	CSMD2	1	34254306	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	10834580	34254306	214996315	4	66816										
IPO13	0	genome.wustl.edu	37	chr1	44422562	44422562	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtctacttccagctggtggaTgtgcttctgcacaaggccca	11	12	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	44422562	44422562	T	C	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	silent	c.1185	p.D395	0.996	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	62	0	0	39	27	40.91	-	-	-	C	44422562	T	C	44422562	2	2	770	1	0	0	0	0	0	0	0	1	7848	1461	51	5		5	IPO13	1	44422562	Silent	SNP	T	TCGA-E2-A158-01A-11D-A12B-09	10168256	44422562	204828059	5	66817										
ADAM30	0	genome.wustl.edu	37	chr1	120438621	120438621	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	agagactctttcacggagccCatgtagttgcagtcctttgg	11	10	2	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	120438621	120438621	C	A	SNP	ADAM30	ENST00000369400	human	ensembl	69_37n	-1	known	missense	c.339	p.M113I	0.031	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249	155	0	0	136	58	29.9	-	-	-	A	120438621	C	A	120438621	3	1	770	1	0	0	0	0	1	0	0	0	248	594	21	4	2037	4	ADAM30	1	120438621	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	76016059	120438621	128812000	6	66818										
CHD1L	0	genome.wustl.edu	37	chr1	146759365	146759365	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	atttacagctctggaaaagcGatccgctgagccaagaaaaa	9	9	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	146759365	146759365	G	C	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.2273	p.R758P	1.000	pfscan_A1pp	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	310	0	0	400	184	31.51	-	-	-	C	146759365	G	C	146759365	3	2	770	1	0	0	0	0	1	0	0	0	3353	1058	37	3	2347	3	CHD1L	1	146759365	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	26320744	146759365	102491256	7	66819										
IQGAP3	0	genome.wustl.edu	37	chr1	156498803	156498803	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtggtcttagtgctcaggccCtgtaatgtggcctgcagctt	13	10	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	156498803	156498803	C	G	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.4476	p.Q1492H	0.988	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	168	1	0.59	167	74	30.58	-	-	-	G	156498803	C	G	156498803	3	3	770	1	0	0	0	0	1	0	0	0	7870	680	24	4	435	4	IQGAP3	1	156498803	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	9739438	156498803	92751818	8	66820										
VANGL2	0	genome.wustl.edu	37	chr1	160388826	160388826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ggaaacgacgacagtagtaaCgggcacctcagagcacagca	12	11	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	160388826	160388826	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.227	p.T76M	0.996	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	72	0	0	64	26	28.89	-	-	-	T	160388826	C	T	160388826	3	4	770	1	0	0	0	0	1	0	0	0	17217	536	19	1	237	1	VANGL2	1	160388826	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	3890023	160388826	88861795	9	66821										
POU2F1	0	genome.wustl.edu	37	chr1	167367365	167367365	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tggccttagagaagagtttcTtggaggtcagtgaggatttt	14	4	2	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	167367365	167367365	T	G	SNP	POU2F1	ENST00000367866	human	ensembl	69_37n	1	known	missense	c.1264	p.L422V	0.977	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	446	0	0	439	176	28.62	-	-	-	G	167367365	T	G	167367365	3	3	770	1	0	0	0	0	1	0	0	0	12344	1606	56	5	1233	5	POU2F1	1	167367365	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09	6978539	167367365	81883256	10	66822										
TDRD5	0	genome.wustl.edu	37	chr1	179609514	179609514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tatttgattatctattgcagGtgctgctacacaaagcttcc	7	9	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	179609514	179609514	G	A	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	1	known	silent	c.1734	p.K578	0.999	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	447	1	0.22	227	216	48.76	-	-	-	A	179609514	G	A	179609514	2	1	770	1	0	0	0	0	0	0	0	1	15828	1275	44	4		4	TDRD5	1	179609514	Silent	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	12242149	179609514	69641107	11	66823										
ASPM	0	genome.wustl.edu	37	chr1	197073197	197073197	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	agtttgatacaagattcccgCatctgcatatactcttctct	5	11	3	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	197073197	197073197	C	A	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.5184	p.M1728I	0.012	superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	271	0	0	162	111	40.66	-	-	-	A	197073197	C	A	197073197	3	1	770	1	0	0	0	0	1	0	0	0	1060	710	25	4	5293	4	ASPM	1	197073197	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	17463683	197073197	52177424	12	66824										
PTPN7	0	genome.wustl.edu	37	chr1	202119541	202119541	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cgatgaagcagcccgtccggCcaatccctgcactggagata	11	14	0	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	202119541	202119541	C	G	SNP	PTPN7	ENST00000309017	human	ensembl	69_37n	-1	known	missense	c.1202	p.G401A	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN7	HGNC	ENSG00000143851	101	0	0	53	56	51.38	-	-	-	G	202119541	C	G	202119541	3	3	770	1	0	0	0	0	1	0	0	0	12876	739	26	4	203	4	PTPN7	1	202119541	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	5046344	202119541	47131080	13	66825										
LRRN2	0	genome.wustl.edu	37	chr1	204588156	204588156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gggggtggatgaaggacagcCgtgggttattggtgatgtcc	19	5	0	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	1	204588156	204588156	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	missense	c.965	p.R322Q	0.982	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	69	0	0	33	22	40	-	-	-	T	204588156	C	T	204588156	3	4	770	1	0	0	0	0	1	0	0	0	9101	652	23	1	1180	1	LRRN2	1	204588156	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	2468615	204588156	44662465	14	66826										
TMEM18	0	genome.wustl.edu	37	chr2	675561	675561	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtagcttcgggaggacaagcAggtgaggagcacgcagagcg	18	8	0	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	675561	675561	A	T	SNP	TMEM18	ENST00000281017	human	ensembl	69_37n	-1	known	missense	c.127	p.C43S	0.141	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	185	0	0	157	76	31.93	-	-	-	T	675561	A	T	675561	3	4	770	1	0	0	0	0	1	0	0	0	16193	188	7	5	311	5	TMEM18	2	675561	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		675561	242523812	15	66827										
SPAST	0	genome.wustl.edu	37	chr2	32379525	32379525	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ccctcaaactttagaagcgtAcatacgttggaacaaggact	8	10	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	32379525	32379525	A	G	SNP	SPAST	ENST00000315285	human	ensembl	69_37n	1	known	missense	c.1811	p.Y604C	1.000	pirsf_Spastin	pfam_ATPase_AAA_core,pfam_MIT,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase,pirsf_Spastin	-	no_errors	SPAST	HGNC	ENSG00000021574	244	0	0	268	138	33.99	-	-	-	G	32379525	A	G	32379525	3	3	770	1	0	0	0	0	1	0	0	0	15088	391	14	5	1877	5	SPAST	2	32379525	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	31703964	32379525	210819848	16	66828										
PPM1B	0	genome.wustl.edu	37	chr2	44457678	44457678	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgctgactagttacaggctaGctaaagtagagggagaagaa	13	5	0	4			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	44457678	44457678	G	C	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	1	known	missense	c.1261	p.A421P	1.000	NULL	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	154	0	0	151	68	29.31	-	-	-	C	44457678	G	C	44457678	3	2	770	1	0	0	0	0	1	0	0	0	12413	971	34	4	1312	4	PPM1B	2	44457678	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	12078153	44457678	198741695	17	66829										
C2orf78	0	genome.wustl.edu	37	chr2	74042839	74042839	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtgtcataaagggtcactctGatcaagtcaggaagaacaag	11	7	5	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	74042839	74042839	G	C	SNP	C2orf78	ENST00000409561	human	ensembl	69_37n	1	novel	missense	c.1489	p.D497H	0.004	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	290	0	0	283	101	26.3	-	-	-	C	74042839	G	C	74042839	3	2	770	1	0	0	0	0	1	0	0	0	2215	1290	45	2	1499	2	C2orf78	2	74042839	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	29585161	74042839	169156534	18	66830										
SLC4A5	0	genome.wustl.edu	37	chr2	74474219	74474219	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgatgaagtttggcttgaagTccatattgatagggtagtac	12	4	0	4			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	74474219	74474219	T	A	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.2003	p.D668V	0.999	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	248	0	0	242	89	26.49	-	-	-	A	74474219	T	A	74474219	3	1	770	1	0	0	0	0	1	0	0	0	14746	1667	58	5	1462	5	SLC4A5	2	74474219	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09	431380	74474219	168725154	19	66831										
TRIM43	0	genome.wustl.edu	37	chr2	96259815	96259815	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cttccagaaggaactcacctGcgtcatctgtttgaactacc	7	13	3	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	96259815	96259815	G	C	SNP	TRIM43	ENST00000272395	human	ensembl	69_37n	1	known	missense	c.44	p.C15S	0.061	smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM43	HGNC	ENSG00000144015	370	0	0	190	146	43.32	-	-	-	C	96259815	G	C	96259815	3	2	770	1	0	0	0	0	1	0	0	0	16614	1319	46	4	46	4	TRIM43	2	96259815	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	21785596	96259815	146939558	20	66832										
GPD2	0	genome.wustl.edu	37	chr2	157407221	157407221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cagcagctatctgccagccaAgtgctggtgtccatattgtg	11	11	1	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	157407221	157407221	A	G	SNP	GPD2	ENST00000310454	human	ensembl	69_37n	1	known	missense	c.934	p.S312G	0.996	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_Ca-bd,prints_G3P_DH_FAD-dep,pfscan_EF_HAND_2	-	no_errors	GPD2	HGNC	ENSG00000115159	222	0	0	142	108	42.86	-	-	-	G	157407221	A	G	157407221	3	3	770	1	0	0	0	0	1	0	0	0	6656	72	3	5	960	5	GPD2	2	157407221	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	61147406	157407221	85792152	21	66833										
CHRNA1	0	genome.wustl.edu	37	chr2	175613362	175613362	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gcgatgtacttgatgccctcGatggcacttttcacctcggg	11	12	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	175613362	175613362	G	A	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	silent	c.1263	p.I421	0.022	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	358	1	0.28	240	191	44.21	-	-	-	A	175613362	G	A	175613362	2	1	770	1	0	0	0	0	0	0	0	1	3410	1048	37	1		1	CHRNA1	2	175613362	Silent	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	18206141	175613362	67586011	22	66834										
TTN	0	genome.wustl.edu	37	chr2	179585241	179585241	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	atcaaaatgttttgaagtgaTtttaaatttcttgctgtttc	6	4	2	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	179585241	179585241	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.19516	p.I6506L	0.978	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	314	0	0	190	140	42.3	-	-	-	G	179585241	T	G	179585241	3	3	770	1	0	0	0	0	1	0	0	0	16832	1493	52	5	81413	5	TTN	2	179585241	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09	3971879	179585241	63614132	23	66835										
TTN	0	genome.wustl.edu	37	chr2	179592849	179592849	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	attctaacctttcacagttaAgatgccactgcatgcatcat	5	11	3	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	179592849	179592849	A	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.15970	p.L5324V	0.999	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	145	0	0	77	72	48.32	-	-	-	C	179592849	A	C	179592849	3	2	770	1	0	0	0	0	1	0	0	0	16832	69	3	5	85011	5	TTN	2	179592849	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	7608	179592849	63606524	24	66836										
COL5A2	0	genome.wustl.edu	37	chr2	189928732	189928732	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tccaagttttccttcaggacCttgaacaccaggatttcctg	7	12	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	189928732	189928732	C	G	SNP	COL5A2	ENST00000374866	human	ensembl	69_37n	-1	known	missense	c.1744	p.G582R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	332	0	0	173	147	45.79	-	-	-	G	189928732	C	G	189928732	3	3	770	1	0	0	0	0	1	0	0	0	3727	681	24	4	2871	4	COL5A2	2	189928732	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	10335883	189928732	53270641	25	66837										
STAT4	0	genome.wustl.edu	37	chr2	191900935	191900935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gagttgatctgagttaagacCacgaccaacgtacgatgaaa	10	8	1	4			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	191900935	191900935	C	T	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	missense	c.1525	p.G509S	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	274	0	0	137	147	51.76	-	-	-	T	191900935	C	T	191900935	3	4	770	1	0	0	0	0	1	0	0	0	15358	594	21	4	753	4	STAT4	2	191900935	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	1972203	191900935	51298438	26	66838										
GPR35	0	genome.wustl.edu	37	chr2	241569563	241569563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	catgaccaacctggcggtggCcgacctctgcctgctgtgca	12	15	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	2	241569563	241569563	C	T	SNP	GPR35	ENST00000438013	human	ensembl	69_37n	1	known	missense	c.287	p.A96V	0.155	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR35	HGNC	ENSG00000178623	51	0	0	26	23	46.94	-	-	-	T	241569563	C	T	241569563	3	4	770	1	0	0	0	0	1	0	0	0	6740	739	26	4	196	4	GPR35	2	241569563	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	49668628	241569563	1629810	27	66839										
TBC1D23	0	genome.wustl.edu	37	chr3	100015073	100015073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	agatatagaagaccttttctCtctggctcagtattattgca	7	8	3	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	3	100015073	100015073	C	G	SNP	TBC1D23	ENST00000394144	human	ensembl	69_37n	1	known	missense	c.830	p.S277C	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	263	0	0	167	130	43.62	-	-	-	G	100015073	C	G	100015073	3	3	770	1	0	0	0	0	1	0	0	0	15705	913	32	2	860	2	TBC1D23	3	100015073	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09		100015073	98007357	28	66840										
CD86	0	genome.wustl.edu	37	chr3	121828123	121828123	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	catttgtagagcttgaggacCctcagcctcccccagaccac	8	16	1	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	3	121828123	121828123	C	G	SNP	CD86	ENST00000330540	human	ensembl	69_37n	1	known	missense	c.715	p.P239A	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD86	HGNC	ENSG00000114013	257	0	0	150	121	44.65	-	-	-	G	121828123	C	G	121828123	3	3	770	1	0	0	0	0	1	0	0	0	3072	623	22	4	733	4	CD86	3	121828123	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	21813050	121828123	76194307	29	66841										
CLRN2	0	genome.wustl.edu	37	chr4	17528460	17528460	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gcggcgtcgtggcgttagccAtcgccagcttcgtggctgcg	16	13	0	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	4	17528460	17528460	A	G	SNP	CLRN2	ENST00000511148	human	ensembl	69_37n	1	known	missense	c.454	p.I152V	0.933	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLRN2	HGNC	ENSG00000249581	151	0	0	23	76	76	-	-	-	G	17528460	A	G	17528460	3	3	770	1	0	0	0	0	1	0	0	0	3588	217	8	5	464	5	CLRN2	4	17528460	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		17528460	173625816	30	66842										
SCFD2	0	genome.wustl.edu	37	chr4	53752015	53752015	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gatcaggagggggtagtcacTaggatgaggccggctcacct	16	9	3	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	4	53752015	53752015	T	A	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	missense	c.1861	p.S621C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	120	0	0	75	77	50.66	-	-	-	A	53752015	T	A	53752015	3	1	770	1	0	0	0	0	1	0	0	0	13977	1522	53	5	201	5	SCFD2	4	53752015	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09	36223555	53752015	137402261	31	66843										
FRAS1	0	genome.wustl.edu	37	chr4	79340212	79340212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cactctacctctgcatccaaAtcaaggtaagatgtgcagta	7	11	3	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	4	79340212	79340212	A	T	SNP	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	missense	c.4535	p.N1512I	0.046	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	332	0	0	184	173	48.46	-	-	-	T	79340212	A	T	79340212	3	4	770	1	0	0	0	0	1	0	0	0	6090	101	4	5	4665	5	FRAS1	4	79340212	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	25588197	79340212	111814064	32	66844										
KIAA1109	0	genome.wustl.edu	37	chr4	123207765	123207765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tacttcaaaagtttctgccaCagatatgtcaaccattcctc	4	12	3	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	4	123207765	123207765	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	1	known	missense	c.9107	p.T3036I	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	435	0	0	218	176	44.67	-	-	-	T	123207765	C	T	123207765	3	4	770	1	0	0	0	0	1	0	0	0	8260	478	17	4	9309	4	KIAA1109	4	123207765	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	43867553	123207765	67946511	33	66845										
MAB21L2	0	genome.wustl.edu	37	chr4	151504781	151504781	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tggcccggccccaatcgggtGgccgaggtcaaggccgaagg	17	13	1	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	4	151504781	151504781	G	C	SNP	MAB21L2	ENST00000317605	human	ensembl	69_37n	1	known	silent	c.600	p.V200	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541	16	0	0	15	9	37.5	-	-	-	C	151504781	G	C	151504781	2	2	770	1	0	0	0	0	0	0	0	1	9209	1335	47	4		4	MAB21L2	4	151504781	Silent	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	28297016	151504781	39649495	34	66846										
PCDHGA5	0	genome.wustl.edu	37	chr5	140746002	140746002	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ggcagtggctgcagtctcctGcgtcttcctggccttcgtca	12	14	3	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	5	140746002	140746002	G	C	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	missense	c.2105	p.C702S	0.933	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	43	0	0	7	30	81.08	-	-	-	C	140746002	G	C	140746002	3	2	770	1	0	0	0	0	1	0	0	0	11630	1319	46	4	2107	4	PCDHGA5	5	140746002	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		140746002	40169258	35	66847										
RNF130	0	genome.wustl.edu	37	chr5	179440193	179440193	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gagccacggctgaagttcttCggtggcattcgagttccaac	12	11	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	5	179440193	179440193	C	A	SNP	RNF130	ENST00000521389	human	ensembl	69_37n	-1	known	silent	c.561	p.P187	0.086	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF130	HGNC	ENSG00000113269	176	0	0	18	98	83.76	-	-	-	A	179440193	C	A	179440193	2	1	770	1	0	0	0	0	0	0	0	1	13524	871	31	3		3	RNF130	5	179440193	Silent	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	38694191	179440193	1475067	36	66848										
RBM24	0	genome.wustl.edu	37	chr6	17283067	17283067	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgaccgggctgctgccgaaaGggcctgcaaggatcccaatc	13	13	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	6	17283067	17283067	G	C	SNP	RBM24	ENST00000379052	human	ensembl	69_37n	1	known	missense	c.200	p.R67T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM24	HGNC	ENSG00000112183	211	0	0	130	98	42.98	-	-	-	C	17283067	G	C	17283067	3	2	770	1	0	0	0	0	1	0	0	0	13207	1000	35	4	239	4	RBM24	6	17283067	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		17283067	153832000	37	66849										
CUL7	0	genome.wustl.edu	37	chr6	43017144	43017144	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gctgctgtgtctggcacccaCcttccactttggctgcatct	9	15	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	6	43017144	43017144	C	T	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	splice_site	c.2077+1	e7+1	0.960	-	-	-	no_errors	CUL7	HGNC	ENSG00000044090	152	0	0	100	60	37.5	-	-	-	T	43017144	C	T	43017144	5	4	770	1	0	0	0	0	0	0	1	0	4091	521	18	4	3350	4	CUL7	6	43017144	Splice_Site	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	25734077	43017144	128097923	38	66850										
ARID1B	0	genome.wustl.edu	37	chr6	157522383	157522383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	actgccaaatcacatctccaGggcgcccagcccagcgtcct	8	18	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	6	157522383	157522383	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.4775	p.R1592K	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	174	0	0	17	82	82.83	-	-	-	A	157522383	G	A	157522383	3	1	770	1	0	0	0	0	1	0	0	0	916	1000	35	4	4725	4	ARID1B	6	157522383	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	114505239	157522383	13592684	39	66851										
SNX10	0	genome.wustl.edu	37	chr7	26412173	26412173	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	acatggatgtaaagtaaataCagctccgcaggaatcctgaa	9	8	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	7	26412173	26412173	C	G	SNP	SNX10	ENST00000446848	human	ensembl	69_37n	1	known	missense	c.665	p.T222R	0.020	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX10	HGNC	ENSG00000086300	331	0	0	172	275	61.52	-	-	-	G	26412173	C	G	26412173	3	3	770	1	0	0	0	0	1	0	0	0	14970	478	17	4	609	4	SNX10	7	26412173	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09		26412173	132726490	40	66852										
CNTNAP2	0	genome.wustl.edu	37	chr7	146829361	146829361	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	atttgagcttttcttgtgtgGaaccctatacggtgcctgtc	10	9	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	7	146829361	146829361	G	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	nonsense	c.1108	p.E370*	1.000	superfamily_ConA-like_lec_gl	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	233	0	0	157	234	59.69	-	-	-	T	146829361	G	T	146829361	4	4	770	1	0	0	0	0	0	1	0	0	3677	1175	41	2	1138	2	CNTNAP2	7	146829361	Nonsense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	120417188	146829361	12309302	41	66853										
EFR3A	0	genome.wustl.edu	37	chr8	132966110	132966110	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	attcaaggtgtggttcgcaaAacagtcaacgatgaacttcg	10	8	2	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	8	132966110	132966110	A	G	SNP	EFR3A	ENST00000254624	human	ensembl	69_37n	1	known	silent	c.534	p.K178	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294	158	0	0	67	142	67.94	-	-	-	G	132966110	A	G	132966110	2	3	770	1	0	0	0	0	0	0	0	1	4993	11	1	5		5	EFR3A	8	132966110	Silent	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		132966110	13397912	42	66854										
FLJ43860	0	genome.wustl.edu	37	chr8	142481164	142481164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cacagaactcacttttgtggCacatcaagagctggtagaga	10	9	2	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	8	142481164	142481164	C	T	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.1997	p.C666Y	0.030	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	158	0	0	167	71	29.83	-	-	-	T	142481164	C	T	142481164	3	4	770	1	0	0	0	0	1	0	0	0	5976	710	25	4	2019	4	FLJ43860	8	142481164	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	9515054	142481164	3882858	43	66855										
B4GALT1	0	genome.wustl.edu	37	chr9	33116073	33116073	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ttagaaactgttgtttacttAgagcagagacacctccaaaa	7	8	0	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	9	33116073	33116073	A	G	SNP	B4GALT1	ENST00000379731	human	ensembl	69_37n	-1	known	missense	c.875	p.L292P	0.997	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT1	HGNC	ENSG00000086062	416	0	0	441	137	23.7	-	-	-	G	33116073	A	G	33116073	3	3	770	1	0	0	0	0	1	0	0	0	1274	420	15	5	333	5	B4GALT1	9	33116073	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		33116073	108097358	44	66856										
C9orf84	0	genome.wustl.edu	37	chr9	114464479	114464479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cataatgatattgtctgatgCcttctcataattcaattctt	4	8	4	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	9	114464479	114464479	C	A	SNP	C9orf84	ENST00000318737	human	ensembl	69_37n	-1	known	missense	c.2803	p.A935S	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181	195	0	0	103	95	47.98	-	-	-	A	114464479	C	A	114464479	3	1	770	1	0	0	0	0	1	0	0	0	2525	739	26	4	1555	4	C9orf84	9	114464479	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	81348406	114464479	26748952	45	66857										
SLC29A3	0	genome.wustl.edu	37	chr10	73111428	73111428	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cctcctggacccgtggctttTttgcggtcaccattgtctgc	10	14	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	10	73111428	73111428	T	C	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	1	known	missense	c.493	p.F165L	1.000	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	153	0	0	87	66	43.14	-	-	-	C	73111428	T	C	73111428	3	2	770	1	0	0	0	0	1	0	0	0	14625	1841	64	5	507	5	SLC29A3	10	73111428	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09		73111428	62423319	46	66858										
PLCE1	0	genome.wustl.edu	37	chr10	96030357	96030357	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gaaaaatggcagaaattttcAaggtgagctctcaacaaaaa	8	6	2	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	10	96030357	96030357	A	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	1	known	missense	c.4504	p.K1502Q	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	212	0	0	124	101	44.89	-	-	-	C	96030357	A	C	96030357	3	2	770	1	0	0	0	0	1	0	0	0	12108	131	5	5	4856	5	PLCE1	10	96030357	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	22918929	96030357	39504390	47	66859										
PTPRE	0	genome.wustl.edu	37	chr10	129875909	129875909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ccgccaggaggagcaggtccGagtagtgcgccagtttcact	14	12	1	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	10	129875909	129875909	G	A	SNP	PTPRE	ENST00000254667	human	ensembl	69_37n	1	known	missense	c.1754	p.R585Q	0.937	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334	38	0	0	2	23	92	-	-	-	A	129875909	G	A	129875909	3	1	770	1	0	0	0	0	1	0	0	0	12883	1058	37	1	1859	1	PTPRE	10	129875909	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	33845552	129875909	5658838	48	66860										
ARFGAP2	0	genome.wustl.edu	37	chr11	47193042	47193042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ttcttcccttccagattctgTagcttcttttcctctttctt	3	13	5	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	11	47193042	47193042	T	G	SNP	ARFGAP2	ENST00000527776	human	ensembl	69_37n	-1	novel	missense	c.67	p.T23P	0.521	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARFGAP2	HGNC	ENSG00000149182	698	0	0	54	249	82.18	-	-	-	G	47193042	T	G	47193042	3	3	770	1	0	0	0	0	1	0	0	0	852	1625	57	5	717	5	ARFGAP2	11	47193042	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09		47193042	87813474	49	66861										
ACSM4	0	genome.wustl.edu	37	chr12	7475135	7475135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	agggctatggacagacggaaGtggtatatctaaagggcatt	14	5	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	12	7475135	7475135	G	T	SNP	ACSM4	ENST00000399422	human	ensembl	69_37n	1	novel	missense	c.1123	p.V375L	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009	317	0	0	228	111	32.74	-	-	-	T	7475135	G	T	7475135	3	4	770	1	0	0	0	0	1	0	0	0	186	1029	36	4	1149	4	ACSM4	12	7475135	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		7475135	126376760	50	66862										
LETMD1	0	genome.wustl.edu	37	chr12	51450235	51450235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgattcaccaactggacaagGctttggcaaagctggggatt	12	8	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	12	51450235	51450235	G	A	SNP	LETMD1	ENST00000262055	human	ensembl	69_37n	1	known	missense	c.865	p.A289T	0.997	pfam_LETM1	pfam_LETM1	-	no_errors	LETMD1	HGNC	ENSG00000050426	182	0	0	93	78	45.09	-	-	-	A	51450235	G	A	51450235	3	1	770	1	0	0	0	0	1	0	0	0	8790	1203	42	4	891	4	LETMD1	12	51450235	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	43975100	51450235	82401660	51	66863										
NACA	0	genome.wustl.edu	37	chr12	57110900	57110900	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gggctccttgggggaaggagGagtcactgctgggagggtgg	22	6	1	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	12	57110900	57110900	G	T	SNP	NACA	ENST00000454682	human	ensembl	69_37n	-1	known	missense	c.4414	p.P1472T	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACA	HGNC	ENSG00000196531	51	0	0	23	4	14.81	-	-	-	T	57110900	G	T	57110900	3	4	770	1	0	0	0	0	1	0	0	0	10205	1174	41	2	1850	2	NACA	12	57110900	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	5660665	57110900	76740995	52	66864										
MDM2	0	genome.wustl.edu	37	chr12	69202261	69202261	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	aagcgcgaaaaccccggatgGtgaggagcaggtactggccc	15	11	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	12	69202261	69202261	G	C	SNP	MDM2	ENST00000462284	human	ensembl	69_37n	1	known	missense	c.4	p.V2L	0.064	NULL	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679	81	0	0	9	67	88.16	-	-	-	C	69202261	G	C	69202261	3	2	770	1	0	0	0	0	1	0	0	0	9484	1261	44	4	6	4	MDM2	12	69202261	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	12091361	69202261	64649634	53	66865										
MYCBP2	0	genome.wustl.edu	37	chr13	77644815	77644815	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgctgaatatgattccaaccAtatgttctttcaggtcagca	7	9	3	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	13	77644815	77644815	A	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.11855	p.M3952T	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	306	0	0	34	281	89.21	-	-	-	G	77644815	A	G	77644815	3	3	770	1	0	0	0	0	1	0	0	0	10090	217	8	5	2241	5	MYCBP2	13	77644815	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		77644815	37525063	54	66866										
UGGT2	0	genome.wustl.edu	37	chr13	96547535	96547535	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	taaaaatcttctgcataaaaAtcttcatctaaaggtcctaa	3	8	5	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	13	96547535	96547535	A	G	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	silent	c.2658	p.D886	0.989	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	269	0	0	27	394	93.59	-	-	-	G	96547535	A	G	96547535	2	3	770	1	0	0	0	0	0	0	0	1	17039	98	4	5		5	UGGT2	13	96547535	Silent	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	18902720	96547535	18622343	55	66867										
DOCK9	0	genome.wustl.edu	37	chr13	99498297	99498297	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ttcgatcatgaactatgggtCccaacccctcctggttcctg	8	14	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	13	99498297	99498297	C	A	SNP	DOCK9	ENST00000450257	human	ensembl	69_37n	-1	known	missense	c.100	p.D34Y	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	DOCK9	HGNC	ENSG00000088387	203	0	0	251	114	31.15	-	-	-	A	99498297	C	A	99498297	3	1	770	1	0	0	0	0	1	0	0	0	4729	870	30	2		2	DOCK9	13	99498297	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	2950762	99498297	15671581	56	66868										
FURIN	0	genome.wustl.edu	37	chr15	91423399	91423399	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cccaaccacatcactcggctGgagcacgctcaggcgcggct	11	17	2	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	15	91423399	91423399	G	A	SNP	FURIN	ENST00000268171	human	ensembl	69_37n	1	known	silent	c.1452	p.L484	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564	27	0	0	24	17	41.46	-	-	-	A	91423399	G	A	91423399	2	1	770	1	0	0	0	0	0	0	0	1	6148	1335	47	4		4	FURIN	15	91423399	Silent	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		91423399	11107993	57	66869										
NOMO3	0	genome.wustl.edu	37	chr16	16349580	16349580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgttctttgttttctagcccGtgttccacgtcatgggattc	9	10	3	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	16	16349580	16349580	G	A	SNP	NOMO3	ENST00000399336	human	ensembl	69_37n	1	known	missense	c.967	p.V323M	0.997	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO3	HGNC	ENSG00000103226	423	0	0	227	154	40.42	-	-	-	A	16349580	G	A	16349580	3	1	770	1	0	0	0	0	1	0	0	0	10605	1145	40	1	1005	1	NOMO3	16	16349580	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		16349580	74005173	58	66870										
AKTIP	0	genome.wustl.edu	37	chr16	53534164	53534164	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ttgtagacatgctccagaaaGggttcataacgtgtattcca	9	8	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	16	53534164	53534164	G	C	SNP	AKTIP	ENST00000300245	human	ensembl	69_37n	-1	known	missense	c.8	p.P3R	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	AKTIP	HGNC	ENSG00000166971	341	0	0	357	132	26.99	-	-	-	C	53534164	G	C	53534164	3	2	770	1	0	0	0	0	1	0	0	0	482	1000	35	4	906	4	AKTIP	16	53534164	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	37184584	53534164	36820589	59	66871										
TP53	0	genome.wustl.edu	37	chr17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gcaaatttccttccactcggAtaagatgctgaggaggggcc	12	10	0	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	17	7578265	7578265	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.584	p.I195T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	295	0	0	34	145	81.01	-	-	-	G	7578265	A	G	7578265	3	3	770	1	0	0	0	0	1	0	0	0	16477	333	12	5	710	5	TP53	17	7578265	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09		7578265	73616945	60	66872										
HLF	0	genome.wustl.edu	37	chr17	53398125	53398125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ccagatcgccatccgggcctCgttcctggagaaggagaact	12	13	0	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	17	53398125	53398125	C	G	SNP	HLF	ENST00000226067	human	ensembl	69_37n	1	known	missense	c.773	p.S258W	0.999	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	36	0	0	5	28	84.85	-	-	-	G	53398125	C	G	53398125	3	3	770	1	0	0	0	0	1	0	0	0	7265	893	31	3	787	3	HLF	17	53398125	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	45819860	53398125	27797085	61	66873										
ASXL3	0	genome.wustl.edu	37	chr18	31320313	31320313	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	taaggaaaagagagctaggaTagaagatgatcagtcaaccc	11	6	2	4			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	18	31320313	31320313	T	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.2945	p.I982K	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	151	0	0	81	52	39.1	-	-	-	A	31320313	T	A	31320313	3	1	770	1	0	0	0	0	1	0	0	0	1072	1406	49	5	2987	5	ASXL3	18	31320313	Missense_Mutation	SNP	T	TCGA-E2-A158-01A-11D-A12B-09		31320313	46756935	62	66874										
SERPINB3	0	genome.wustl.edu	37	chr18	61325830	61325830	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	aatcaacagattccacactgGtctggtaaaatttcttgatg	7	8	3	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	18	61325830	61325830	G	C	SNP	SERPINB3	ENST00000283752	human	ensembl	69_37n	-1	known	missense	c.386	p.T129S	0.792	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149	660	0	0	303	279	47.94	-	-	-	C	61325830	G	C	61325830	3	2	770	1	0	0	0	0	1	0	0	0	14190	1261	44	4	802	4	SERPINB3	18	61325830	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	30005517	61325830	16751418	63	66875										
SAMD1	0	genome.wustl.edu	37	chr19	14199331	14199331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gctggcccgaggcggatggaCaggccggtgagcacatctgt	17	11	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	14199331	14199331	C	T	SNP	SAMD1	ENST00000533683	human	ensembl	69_37n	-1	novel	silent	c.1197	p.L399	1.000	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD1	HGNC	ENSG00000141858	89	0	0	61	50	45.05	-	-	-	T	14199331	C	T	14199331	2	4	770	1	0	0	0	0	0	0	0	1	13900	465	17	4		4	SAMD1	19	14199331	Silent	SNP	C	TCGA-E2-A158-01A-11D-A12B-09		14199331	44929652	64	66876										
OR10H2	0	genome.wustl.edu	37	chr19	15838966	15838966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cctgctgatgtacctgttcaCgctgctgggcaacctgctca	10	14	2	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	15838966	15838966	C	T	SNP	OR10H2	ENST00000305899	human	ensembl	69_37n	1	known	missense	c.113	p.T38M	0.994	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942	345	0	0	170	147	46.37	-	-	-	T	15838966	C	T	15838966	3	4	770	1	0	0	0	0	1	0	0	0	10979	536	19	1	115	1	OR10H2	19	15838966	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	1639635	15838966	43290017	65	66877										
SLC5A5	0	genome.wustl.edu	37	chr19	17985316	17985316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tctacagatgctgtacaccgGcatcgtaatctacgcaccgg	9	13	2	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	17985316	17985316	G	T	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	missense	c.437	p.G146V	0.999	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	189	1	0.53	110	87	43.94	-	-	-	T	17985316	G	T	17985316	3	4	770	1	0	0	0	0	1	0	0	0	14757	1203	42	4	447	4	SLC5A5	19	17985316	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	2146350	17985316	41143667	66	66878										
ZNF100	0	genome.wustl.edu	37	chr19	21909523	21909523	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tctccagtatgagttattttGtttaataaggcttagggact	9	5	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	21909523	21909523	G	C	SNP	ZNF100	ENST00000358296	human	ensembl	69_37n	-1	known	missense	c.1591	p.Q531E	0.933	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020	223	0	0	97	71	42.26	-	-	-	C	21909523	G	C	21909523	3	2	770	1	0	0	0	0	1	0	0	0	17809	1386	48	4	41	4	ZNF100	19	21909523	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	3924207	21909523	37219460	67	66879										
ZNF181	0	genome.wustl.edu	37	chr19	35232115	35232115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtgggaagacttttagccatGgctcatcccttacacgacat	9	11	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	35232115	35232115	G	T	SNP	ZNF181	ENST00000492450	human	ensembl	69_37n	1	known	missense	c.829	p.G277C	0.206	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841	265	0	0	145	116	44.44	-	-	-	T	35232115	G	T	35232115	3	4	770	1	0	0	0	0	1	0	0	0	17845	1348	47	4	843	4	ZNF181	19	35232115	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	13322592	35232115	23896868	68	66880										
SYMPK	0	genome.wustl.edu	37	chr19	46319242	46319242	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ggaaatccatggcttcctcaGacgggggcgggcctggccgg	17	12	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	46319242	46319242	G	C	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	missense	c.3554	p.S1185C	0.007	NULL	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	9	0	0	2	7	77.78	-	-	-	C	46319242	G	C	46319242	3	2	770	1	0	0	0	0	1	0	0	0	15531	942	33	2	278	2	SYMPK	19	46319242	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	11087127	46319242	12809741	69	66881										
HRC	0	genome.wustl.edu	37	chr19	49658427	49658427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gctgctgggtcatggccgggGggaggagcaggctggccacc	20	11	1	0			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	19	49658427	49658427	G	T	SNP	HRC	ENST00000252825	human	ensembl	69_37n	-1	known	missense	c.68	p.P23H	0.987	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	86	0	0	46	36	43.37	-	-	-	T	49658427	G	T	49658427	3	4	770	1	0	0	0	0	1	0	0	0	7403	1232	43	4	2055	4	HRC	19	49658427	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	3339185	49658427	9470556	70	66882										
PEG3	0	genome.wustl.edu	37	chr19	57326308	57326308	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	atgaataaaagattccccacActttggacattcatacagct	5	10	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	19	57326308	57326308	A	C	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.3502	p.C1168G	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	165	0	0	81	88	52.07	-	-	-	C	57326308	A	C	57326308	3	2	770	1	0	0	0	0	1	0	0	0	11793	159	6	5	1268	5	PEG3	19	57326308	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	7667881	57326308	1802675	71	66883										
CPXM1	0	genome.wustl.edu	37	chr20	2775057	2775057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	gtcccctggggtcagcagacGccaataatccccgccccacg	10	18	1	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	20	2775057	2775057	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	missense	c.1984	p.R662C	1.000	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	59	0	0	32	19	37.25	-	-	-	A	2775057	G	A	2775057	3	1	770	1	0	0	0	0	1	0	0	0	3867	1087	38	1	224	1	CPXM1	20	2775057	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		2775057	60250463	72	66884										
HRH3	0	genome.wustl.edu	37	chr20	60794857	60794857	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tcgagtcggccacgaaggcgAgcatgaccagcgcgttgccc	14	14	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	20	60794857	60794857	A	T	SNP	HRH3	ENST00000317393	human	ensembl	69_37n	-1	known	missense	c.170	p.L57H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Histamine_H3_recept,prints_7TM_GPCR_Rhodpsn,prints_Musac_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180	25	0	0	17	9	34.62	-	-	-	T	60794857	A	T	60794857	3	4	770	1	0	0	0	0	1	0	0	0	7408	304	11	5	1179	5	HRH3	20	60794857	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	58019800	60794857	2230663	73	66885										
ETS2	0	genome.wustl.edu	37	chr21	40188980	40188980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgaagaaaattcacacctcaCctccgttcctcattggatta	5	12	3	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	21	40188980	40188980	C	T	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	missense	c.554	p.T185I	0.930	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	269	1	0.37	139	211	60.29	-	-	-	T	40188980	C	T	40188980	3	4	770	1	0	0	0	0	1	0	0	0	5313	507	18	4	572	4	ETS2	21	40188980	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09		40188980	7940915	74	66886										
IL2RB	0	genome.wustl.edu	37	chr22	37540124	37540124	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ttcagatgtcagggtcctcaCcattcaccgctgcagatgcc	9	14	4	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	22	37540124	37540124	C	A	SNP	IL2RB	ENST00000216223	human	ensembl	69_37n	-1	known	splice_site	c.88+1	e1+1	0.989	-	-	-	no_errors	IL2RB	HGNC	ENSG00000100385	134	0	0	85	60	41.1	-	-	-	A	37540124	C	A	37540124	5	1	770	1	0	0	0	0	0	0	1	0	7741	521	18	4	1602	4	IL2RB	22	37540124	Splice_Site	SNP	C	TCGA-E2-A158-01A-11D-A12B-09		37540124	13764442	75	66887										
PANX2	0	genome.wustl.edu	37	chr22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	CC													0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	cgggaggaggaggacgggggINScccccgcctgccgcaggacg							TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	22	50617594	50617595	-	CC	INS	PANX2	ENST00000395842	human	ensembl	69_37n	1	known	frame_shift_ins	c.1922_1923	p.R643fs	0.106:0.002	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150	29	0	0	4	2	33.33	-	-	-	CC	50617595	-	CC	50617594	7	5	770	1	0	1	1	0	0	0	0	0	11494	1203	42	0	1932	0	PANX2	22	50617594	Frame_Shift_Ins	INS	-	TCGA-E2-A158-01A-11D-A12B-09	13077470	50617594	686972	76	66888										
PHEX	0	genome.wustl.edu	37	chrX	22208620	22208620	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgcatccaccaaccagatccGtgagtacgggttccttgtct	9	13	1	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	X	22208620	22208620	G	A	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	splice_site	c.1645+1	e15+1	0.999	-	-	-	no_errors	PHEX	HGNC	ENSG00000102174	372	0	0	208	175	45.69	-	-	-	A	22208620	G	A	22208620	5	1	770	1	0	0	0	0	0	0	1	0	11893	1159	40	1	1704	1	PHEX	23	22208620	Splice_Site	SNP	G	TCGA-E2-A158-01A-11D-A12B-09		22208620	133061940	77	66889										
PRICKLE3	0	genome.wustl.edu	37	chrX	49040158	49040158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tagtgtgcacccactggacaGcaagagtggagggctggcct	15	10	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	X	49040158	49040158	G	T	SNP	PRICKLE3	ENST00000536904	human	ensembl	69_37n	-1	known	missense	c.137	p.A46D	0.001	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	31	0	0	23	4	14.81	-	-	-	T	49040158	G	T	49040158	3	4	770	1	0	0	0	0	1	0	0	0	12569	986	34	4		4	PRICKLE3	23	49040158	Missense_Mutation	SNP	G	TCGA-E2-A158-01A-11D-A12B-09	26831538	49040158	106230402	78	66890										
IGBP1	0	genome.wustl.edu	37	chrX	69353826	69353826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	tgaggacgagttacagctgcCgcggctccccgagctgttcg	14	13	0	1			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	671469b6-2cc7-4236-95d3-3e3f73e08ea3	X	69353826	69353826	C	T	SNP	IGBP1	ENST00000342206	human	ensembl	69_37n	1	known	missense	c.29	p.P10L	0.979	NULL	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289	103	1	0.96	54	46	46	-	-	-	T	69353826	C	T	69353826	3	4	770	1	0	0	0	0	1	0	0	0	7621	652	23	1	31	1	IGBP1	23	69353826	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	20313668	69353826	85916734	79	66891										
KIAA1210	0	genome.wustl.edu	37	chrX	118221420	118221420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	aggactgtaaagggtgcttcAtaggtagcatctttgaagaa	12	5	2	2			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	X	118221420	118221420	A	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3773	p.M1258K	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	104	0	0	62	55	47.01	-	-	-	T	118221420	A	T	118221420	3	4	770	1	0	0	0	0	1	0	0	0	8266	217	8	5	1372	5	KIAA1210	23	118221420	Missense_Mutation	SNP	A	TCGA-E2-A158-01A-11D-A12B-09	48867594	118221420	37049140	80	66892										
IGSF1	0	genome.wustl.edu	37	chrX	130408820	130408820	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	aacttgaacatggtgctgggCcaggctgacagagagggttt	15	7	0	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	X	130408820	130408820	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	nonsense	c.3519	p.W1173*	1.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	147	0	0	160	69	30.13	-	-	-	T	130408820	C	T	130408820	4	4	770	1	0	0	0	0	0	1	0	0	7650	740	26	4	518	4	IGSF1	23	130408820	Nonsense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	12187400	130408820	24861740	81	66893										
IRAK1	0	genome.wustl.edu	37	chrX	153278098	153278098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0365853658536585	3	1	0.512959614225437	1.13391072618254	0	0.1	0.5224358974359	0	ataatctgcggtggctctgaCgacgatgatgcagagctgcc	13	10	2	3			TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5517dcca-46e7-4d0c-ba4f-193343f590d6	7d23b5bb-cacb-4c49-a6f0-b1293bccd644	X	153278098	153278098	C	T	SNP	IRAK1	ENST00000455690	human	ensembl	69_37n	-1	putative	missense	c.311	p.R104H	0.000	NULL	NULL	-	no_start_codon	IRAK1	HGNC	ENSG00000184216	55	0	0	44	69	60	-	-	-	T	153278098	C	T	153278098	3	4	770	1	0	0	0	0	1	0	0	0	7875	523	19	1	184	1	IRAK1	23	153278098	Missense_Mutation	SNP	C	TCGA-E2-A158-01A-11D-A12B-09	22869278	153278098	1992462	82	66894										
ARHGEF19	0	genome.wustl.edu	37	chr1	16525668	16525668	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cactggtccaggtcctcactGacaggatgtcagtcttctcc	9	14	4	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	16525668	16525668	G	A	SNP	ARHGEF19	ENST00000270747	human	ensembl	69_37n	-1	known	missense	c.2228	p.S743L	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632	227	0	0	114	38	25	-	-	-	A	16525668	G	A	16525668	3	1	771	1	0	0	0	0	1	0	0	0	904	1294	45	2	188	2	ARHGEF19	1	16525668	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		16525668	232724953	1	66895										
UBR4	0	genome.wustl.edu	37	chr1	19407923	19407923	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atttccacacgtgtggctctCcactgctcagggggcaggat	12	12	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	19407923	19407923	C	G	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.15153	p.W5051C	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	194	0	0	96	33	25.58	-	-	-	G	19407923	C	G	19407923	3	3	771	1	0	0	0	0	1	0	0	0	17001	856	30	2	414	2	UBR4	1	19407923	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	2882255	19407923	229842698	2	66896										
GPN2	0	genome.wustl.edu	37	chr1	27216558	27216558	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gggccgatcaccgcctgcccGaaggccgtggtcggagcggc	17	15	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	27216558	27216558	G	A	SNP	GPN2	ENST00000374135	human	ensembl	69_37n	-1	known	silent	c.30	p.F10	0.971	NULL	pfam_Uncharacterised_ATP-bd	-	no_errors	GPN2	HGNC	ENSG00000142751	8	0	0	7	4	36.36	-	-	-	A	27216558	G	A	27216558	2	1	771	1	0	0	0	0	0	0	0	1	6668	1049	37	1		1	GPN2	1	27216558	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	7808635	27216558	222034063	3	66897										
PUM1	0	genome.wustl.edu	37	chr1	31437562	31437562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atccatgtgaagagagggaaGgaggtggtgtctgtgaatgt	17	3	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	31437562	31437562	G	A	SNP	PUM1	ENST00000426105	human	ensembl	69_37n	-1	known	missense	c.2282	p.P761L	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	553	0	0	350	94	21.12	-	-	-	A	31437562	G	A	31437562	3	1	771	1	0	0	0	0	1	0	0	0	12908	1000	35	4	1320	4	PUM1	1	31437562	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	4221004	31437562	217813059	4	66898										
ZMYM4	0	genome.wustl.edu	37	chr1	35873661	35873661	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcctgcacttttgctgagttGagtttgggcttatgccagtt	11	8	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	35873661	35873661	G	C	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.3849	p.L1283F	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	323	0	0	258	68	20.86	-	-	-	C	35873661	G	C	35873661	3	2	771	1	0	0	0	0	1	0	0	0	17798	1281	45	2	3951	2	ZMYM4	1	35873661	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	4436099	35873661	213376960	5	66899										
MACF1	0	genome.wustl.edu	37	chr1	39797744	39797744	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctaacaatagatgaagcagtGagcaatgatctagtagctgc	10	7	1	4			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	39797744	39797744	G	A	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	silent	c.5595	p.V1865	0.023	pfam_Plectin_repeat,superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	247	0	0	133	38	22.22	-	-	-	A	39797744	G	A	39797744	2	1	771	1	0	0	0	0	0	0	0	1	9211	1277	45	2		2	MACF1	1	39797744	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	3924083	39797744	209452877	6	66900										
MACF1	0	genome.wustl.edu	37	chr1	39798309	39798309	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atcaaaggcaaaaaactcctGagggattgcaagaatcagct	9	8	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	39798309	39798309	G	C	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.6160	p.E2054Q	0.000	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	217	0	0	184	56	23.33	-	-	-	C	39798309	G	C	39798309	3	2	771	1	0	0	0	0	1	0	0	0	9211	1291	45	2	6140	2	MACF1	1	39798309	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	565	39798309	209452312	7	66901										
AK5	0	genome.wustl.edu	37	chr1	77748056	77748056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gggaaatccctcagctttttGaggtagggctagagctggcc	14	9	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	77748056	77748056	G	C	SNP	AK5	ENST00000354567	human	ensembl	69_37n	1	known	missense	c.58	p.E20Q	1.000	pfam_Dpy-30_motif,superfamily_cAMP_dep_PK_reg_su_I/II_a/b	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	128	0	0	63	30	31.91	-	-	-	C	77748056	G	C	77748056	3	2	771	1	0	0	0	0	1	0	0	0	443	1291	45	2	60	2	AK5	1	77748056	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	37949747	77748056	171502565	8	66902										
HIST2H3D	0	genome.wustl.edu	37	chr1	149785205	149785205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcggggccttgccgccggtcGacttgcgggcagtctgctta	15	13	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	149785205	149785205	G	A	SNP	HIST2H3D	ENST00000331491	human	ensembl	69_37n	-1	known	missense	c.32	p.S11L	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598	87	0	0	65	13	16.67	-	-	-	A	149785205	G	A	149785205	3	1	771	1	0	0	0	0	1	0	0	0	7232	1059	37	1	380	1	HIST2H3D	1	149785205	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	72037149	149785205	99465416	9	66903										
ECM1	0	genome.wustl.edu	37	chr1	150484178	150484178	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atctgccacctgaggcgcttCcgctctgtgccacgcaacct	9	17	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	150484178	150484178	C	T	SNP	ECM1	ENST00000369049	human	ensembl	69_37n	1	known	silent	c.1035	p.F345	0.966	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369	72	0	0	40	14	25.93	-	-	-	T	150484178	C	T	150484178	2	4	771	1	0	0	0	0	0	0	0	1	4932	854	30	2		2	ECM1	1	150484178	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	698973	150484178	98766443	10	66904										
HORMAD1	0	genome.wustl.edu	37	chr1	150684035	150684035	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acttacctgaggatcttctgGgtttgtgtatacctatttaa	8	7	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	150684035	150684035	G	C	SNP	HORMAD1	ENST00000361824	human	ensembl	69_37n	-1	known	missense	c.313	p.P105A	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452	354	0	0	327	96	22.7	-	-	-	C	150684035	G	C	150684035	3	2	771	1	0	0	0	0	1	0	0	0	7337	1232	43	4	907	4	HORMAD1	1	150684035	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	199857	150684035	98566586	11	66905										
TCHH	0	genome.wustl.edu	37	chr1	152083125	152083125	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctcctctcctgatcctcctgGaggccgtcctcctcctcctg	7	20	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	152083125	152083125	G	C	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	silent	c.2568	p.L856	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	121	0	0	83	10	10.64	-	-	-	C	152083125	G	C	152083125	2	2	771	1	0	0	0	0	0	0	0	1	15795	1161	41	2		2	TCHH	1	152083125	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1399090	152083125	97167496	12	66906										
TPM3	0	genome.wustl.edu	37	chr1	154163705	154163705	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gttccagcttctcctgggcaTccttcaaagcttcagaatac	7	13	3	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	154163705	154163705	T	A	SNP	TPM3	ENST00000368530	human	ensembl	69_37n	-1	known	missense	c.200	p.D67V	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	556	0	0	499	111	18.2	-	-	-	A	154163705	T	A	154163705	3	1	771	1	0	0	0	0	1	0	0	0	16503	1435	50	5	1080	5	TPM3	1	154163705	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	2080580	154163705	95086916	13	66907										
TRIM46	0	genome.wustl.edu	37	chr1	155150660	155150660	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gatggctcaggtctggtgggCtatgcccaggaagtacttaa	14	8	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	155150660	155150660	C	G	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	silent	c.1092	p.G364	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	80	0	0	52	10	16.13	-	-	-	G	155150660	C	G	155150660	2	3	771	1	0	0	0	0	0	0	0	1	16617	784	28	4		4	TRIM46	1	155150660	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	986955	155150660	94099961	14	66908										
IQGAP3	0	genome.wustl.edu	37	chr1	156531792	156531792	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acaacttctagagccccatgGactgaaaaaaaatgactcca	6	11	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	156531792	156531792	G	C	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	silent	c.879	p.V293	0.993	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	123	0	0	83	12	12.63	-	-	-	C	156531792	G	C	156531792	2	2	771	1	0	0	0	0	0	0	0	1	7870	1188	41	2		2	IQGAP3	1	156531792	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1381132	156531792	92718829	15	66909										
CD1E	0	genome.wustl.edu	37	chr1	158325653	158325653	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gctgtcctgtggccccagtcCtggccctggccgtctgcagc	13	17	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	158325653	158325653	C	G	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	missense	c.662	p.P221R	0.057	pfscan_Ig-like	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	245	0	0	162	38	19	-	-	-	G	158325653	C	G	158325653	3	3	771	1	0	0	0	0	1	0	0	0	3007	681	24	4	676	4	CD1E	1	158325653	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1793861	158325653	90924968	16	66910										
OR10J1	0	genome.wustl.edu	37	chr1	159409770	159409770	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acacccatgtacttcttcctGagcatgctgtccacttcaga	6	14	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	159409770	159409770	G	C	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	silent	c.222	p.L74	0.077	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	384	0	0	248	59	19.16	-	-	-	C	159409770	G	C	159409770	2	2	771	1	0	0	0	0	0	0	0	1	10983	1277	45	2		2	OR10J1	1	159409770	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1084117	159409770	89840851	17	66911										
ARID4B	0	genome.wustl.edu	37	chr1	235345497	235345497	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gctgttttgaagtctttcatCagagttatttaaaagtttaa	7	4	3	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	235345497	235345497	C	G	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.2737	p.D913H	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	114	0	0	191	32	14.35	-	-	-	G	235345497	C	G	235345497	3	3	771	1	0	0	0	0	1	0	0	0	922	826	29	2	1221	2	ARID4B	1	235345497	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	75935727	235345497	13905124	18	66912										
OR2G3	0	genome.wustl.edu	37	chr1	247769442	247769442	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgcgaagtaccagctcttctCaagttggcttgtgtggacac	11	10	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	247769442	247769442	C	G	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	silent	c.555	p.L185	0.541	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	664	0	0	629	92	12.76	-	-	-	G	247769442	C	G	247769442	2	3	771	1	0	0	0	0	0	0	0	1	11072	813	29	2		2	OR2G3	1	247769442	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	12423945	247769442	1481179	19	66913										
OR2T35	0	genome.wustl.edu	37	chr1	248801684	248801684	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gcagccacatctttattcctCaagctgtagatgagtgggtt	10	9	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	1	248801684	248801684	C	G	SNP	OR2T35	ENST00000317450	human	ensembl	69_37n	-1	known	missense	c.876	p.L292F	0.960	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T35	HGNC	ENSG00000177151	110	1	0.9	102	24	19.05	-	-	-	G	248801684	C	G	248801684	3	3	771	1	0	0	0	0	1	0	0	0	11099	825	29	2	99	2	OR2T35	1	248801684	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1032242	248801684	448937	20	66914										
MYT1L	0	genome.wustl.edu	37	chr2	1805566	1805566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tttgatttcttcatcattttCtatacctgtaataatgaata	3	6	4	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	1805566	1805566	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.3178	p.E1060Q	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	430	0	0	1028	158	13.32	-	-	-	G	1805566	C	G	1805566	3	3	771	1	0	0	0	0	1	0	0	0	10179	922	32	2	394	2	MYT1L	2	1805566	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		1805566	241393807	21	66915										
SOX11	0	genome.wustl.edu	37	chr2	5833196	5833196	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agcacatggccgactaccccGactacaagtaccggccccgg	10	17	0	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	5833196	5833196	G	T	SNP	SOX11	ENST00000322002	human	ensembl	69_37n	1	known	missense	c.343	p.D115Y	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pirsf_SOX-12/11/4a,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pirsf_SOX-12/11/4a,pfscan_HMG_superfamily	-	no_errors	SOX11	HGNC	ENSG00000176887	56	0	0	52	7	11.86	-	-	-	T	5833196	G	T	5833196	3	4	771	1	0	0	0	0	1	0	0	0	15031	1058	37	3	345	3	SOX11	2	5833196	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	4027630	5833196	237366177	22	66916										
C2orf50	0	genome.wustl.edu	37	chr2	11284204	11284204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttcacagaaggggcccggaaGaagaagctggaggaccagat	15	8	1	4			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	11284204	11284204	G	C	SNP	C2orf50	ENST00000381585	human	ensembl	69_37n	1	known	missense	c.456	p.K152N	1.000	NULL	NULL	-	no_errors	C2orf50	HGNC	ENSG00000150873	78	0	0	50	14	21.88	-	-	-	C	11284204	G	C	11284204	3	2	771	1	0	0	0	0	1	0	0	0	2192	933	33	2	466	2	C2orf50	2	11284204	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	5451008	11284204	231915169	23	66917										
GREB1	0	genome.wustl.edu	37	chr2	11702668	11702668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	aatggccccccaaaccctttCcagctgcaccctctgcctga	6	19	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	11702668	11702668	C	A	SNP	GREB1	ENST00000234142	human	ensembl	69_37n	1	known	missense	c.237	p.F79L	1.000	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	203	0	0	102	40	27.97	-	-	-	A	11702668	C	A	11702668	3	1	771	1	0	0	0	0	1	0	0	0	6811	854	30	2	243	2	GREB1	2	11702668	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	418464	11702668	231496705	24	66918										
NT5C1B	0	genome.wustl.edu	37	chr2	18757611	18757611	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agccatgtctttggctccatCaaacattgtcgcagaggcaa	9	11	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	18757611	18757611	C	G	SNP	NT5C1B	ENST00000359846	human	ensembl	69_37n	-1	known	missense	c.1348	p.D450H	0.766	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013	207	0	0	125	27	17.76	-	-	-	G	18757611	C	G	18757611	3	3	771	1	0	0	0	0	1	0	0	0	10759	826	29	2	492	2	NT5C1B	2	18757611	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	7054943	18757611	224441762	25	66919										
APOB	0	genome.wustl.edu	37	chr2	21232419	21232419	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agtcacctcacggattttgtCattggtttcatctacaaact	6	10	5	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	21232419	21232419	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.7321	p.D2441N	0.029	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	278	0	0	255	78	23.35	-	-	-	T	21232419	C	T	21232419	3	4	771	1	0	0	0	0	1	0	0	0	787	826	29	2	6386	2	APOB	2	21232419	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	2474808	21232419	221966954	26	66920										
ITSN2	0	genome.wustl.edu	37	chr2	24484608	24484608	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttctcctacggttttttcatCaacctacggaaataaaaaga	5	9	3	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	24484608	24484608	C	T	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.2359	p.D787N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	193	0	0	217	70	24.39	-	-	-	T	24484608	C	T	24484608	3	4	771	1	0	0	0	0	1	0	0	0	7981	826	29	2	2865	2	ITSN2	2	24484608	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	3252189	24484608	218714765	27	66921										
CENPO	0	genome.wustl.edu	37	chr2	25040616	25040616	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tctgtacgaagcccttgcatCaagtgtttgcctcatttaca	7	11	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	25040616	25040616	C	T	SNP	CENPO	ENST00000260662	human	ensembl	69_37n	1	known	nonsense	c.844	p.Q282*	0.009	NULL	pfam_Centromere_CenpO	-	no_errors	CENPO	HGNC	ENSG00000138092	383	0	0	242	72	22.86	-	-	-	T	25040616	C	T	25040616	4	4	771	1	0	0	0	0	0	1	0	0	3268	827	29	2	866	2	CENPO	2	25040616	Nonsense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	556008	25040616	218158757	28	66922										
SFTPB	0	genome.wustl.edu	37	chr2	85893784	85893784	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gaccagggggaagtagtcgtCaagcacttggttgcactggg	16	8	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	85893784	85893784	C	G	SNP	SFTPB	ENST00000393822	human	ensembl	69_37n	-1	known	missense	c.385	p.D129H	0.003	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878	231	1	0.43	123	34	21.66	-	-	-	G	85893784	C	G	85893784	3	3	771	1	0	0	0	0	1	0	0	0	14279	826	29	2	824	2	SFTPB	2	85893784	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	60853168	85893784	157305589	29	66923										
TMEM37	0	genome.wustl.edu	37	chr2	120194851	120194851	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctcctcctggtgtctttcgtCctctcctccggcgggctcct	9	18	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	120194851	120194851	C	A	SNP	TMEM37	ENST00000306406	human	ensembl	69_37n	1	known	silent	c.408	p.V136	0.040	NULL	NULL	-	no_errors	TMEM37	HGNC	ENSG00000171227	222	0	0	89	20	18.35	-	-	-	A	120194851	C	A	120194851	2	1	771	1	0	0	0	0	0	0	0	1	16253	842	30	2		2	TMEM37	2	120194851	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	34301067	120194851	123004522	30	66924										
NCKAP5	0	genome.wustl.edu	37	chr2	133636435	133636435	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ccttacctcatcaagacatcGctcatattgttccctttgat	4	13	3	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	133636435	133636435	G	T	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	silent	c.634	p.R212	0.721	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	691	0	0	323	138	29.87	-	-	-	T	133636435	G	T	133636435	2	4	771	1	0	0	0	0	0	0	0	1	10295	1095	38	3		3	NCKAP5	2	133636435	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	13441584	133636435	109562938	31	66925										
BAZ2B	0	genome.wustl.edu	37	chr2	160257133	160257133	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tagaatttgctgagctcgaaGttctttttccattctgattt	7	7	2	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	160257133	160257133	G	C	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.2875	p.L959V	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	194	0	0	156	72	31.44	-	-	-	C	160257133	G	C	160257133	3	2	771	1	0	0	0	0	1	0	0	0	1336	1029	36	4	3715	4	BAZ2B	2	160257133	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	26620698	160257133	82942240	32	66926										
METTL5	0	genome.wustl.edu	37	chr2	170668867	170668867	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttcaagcgattctcttgcctCagcctcccgagtagctggga	10	13	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	2	170668867	170668867	C	G	SNP	METTL5	ENST00000410097	human	ensembl	69_37n	-1	putative	missense	c.691	p.E231Q	0.022	NULL	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_RNA_cap_Gua-N2-MeTrfase,pfam_Methyltransf_11	-	no_errors	METTL5	HGNC	ENSG00000138382	190	0	0	97	47	32.41	-	-	-	G	170668867	C	G	170668867	3	3	771	1	0	0	0	0	1	0	0	0	9574	841	29	2		2	METTL5	2	170668867	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	10411734	170668867	72530506	33	66927										
XIRP1	0	genome.wustl.edu	37	chr3	39228203	39228203	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gctagttagccggggctgcaGagagtaggcagtcagtgcga	17	8	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	3	39228203	39228203	G	C	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.2734	p.L912V	0.984	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	56	0	0	24	12	33.33	-	-	-	C	39228203	G	C	39228203	3	2	771	1	0	0	0	0	1	0	0	0	17526	933	33	2	2801	2	XIRP1	3	39228203	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		39228203	158794227	34	66928										
TIGIT	0	genome.wustl.edu	37	chr3	114014431	114014431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agaaacaacggggaacatttCtgcagagaaaggtggctcta	12	7	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	3	114014431	114014431	C	T	SNP	TIGIT	ENST00000383671	human	ensembl	69_37n	1	known	missense	c.101	p.S34F	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TIGIT	HGNC	ENSG00000181847	144	0	0	77	23	23	-	-	-	T	114014431	C	T	114014431	3	4	771	1	0	0	0	0	1	0	0	0	15997	913	32	2	107	2	TIGIT	3	114014431	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	74786228	114014431	84007999	35	66929										
TOPBP1	0	genome.wustl.edu	37	chr3	133339115	133339115	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtcctctgcccttggggtttCactattgatgttgcagacat	10	10	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	3	133339115	133339115	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	silent	c.3255	p.V1085	0.975	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	480	0	0	367	95	20.52	-	-	-	T	133339115	C	T	133339115	2	4	771	1	0	0	0	0	0	0	0	1	16465	813	29	2		2	TOPBP1	3	133339115	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	19324684	133339115	64683315	36	66930										
CPZ	0	genome.wustl.edu	37	chr4	8607783	8607783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gcgggccgggagatgctcatCtacctagcccagtacctgtg	13	13	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	8607783	8607783	C	G	SNP	CPZ	ENST00000360986	human	ensembl	69_37n	1	known	missense	c.777	p.I259M	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,pfscan_Frizzled_dom,prints_Peptidase_M14	-	no_errors	CPZ	HGNC	ENSG00000109625	262	1	0.38	84	56	40	-	-	-	G	8607783	C	G	8607783	3	3	771	1	0	0	0	0	1	0	0	0	3869	903	32	2	795	2	CPZ	4	8607783	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		8607783	182546493	37	66931										
C1QTNF7	0	genome.wustl.edu	37	chr4	15444327	15444327	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acagaccagaatggcctcttCtcagacccaggttgggcaga	11	12	2	4			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	15444327	15444327	C	G	SNP	C1QTNF7	ENST00000429690	human	ensembl	69_37n	1	known	missense	c.774	p.F258L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF7	HGNC	ENSG00000163145	131	0	0	47	22	31.88	-	-	-	G	15444327	C	G	15444327	3	3	771	1	0	0	0	0	1	0	0	0	1987	912	32	2	805	2	C1QTNF7	4	15444327	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	6836544	15444327	175709949	38	66932										
BANK1	0	genome.wustl.edu	37	chr4	102946639	102946639	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctgtagctaatgccttccaaCtggaaagacctcacttcacc	6	14	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	102946639	102946639	C	A	SNP	BANK1	ENST00000322953	human	ensembl	69_37n	1	known	missense	c.1567	p.L523M	0.220	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	142	0	0	61	41	39.81	-	-	-	A	102946639	C	A	102946639	3	1	771	1	0	0	0	0	1	0	0	0	1313	564	20	4	1601	4	BANK1	4	102946639	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	87502312	102946639	88207637	39	66933										
PRDM5	0	genome.wustl.edu	37	chr4	121616407	121616407	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgtcgaatcagcattttcttCaggctaaaagccaaatcaca	6	10	4	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	121616407	121616407	C	T	SNP	PRDM5	ENST00000264808	human	ensembl	69_37n	-1	known	silent	c.1752	p.L584	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738	259	0	0	152	65	29.95	-	-	-	T	121616407	C	T	121616407	2	4	771	1	0	0	0	0	0	0	0	1	12541	813	29	2		2	PRDM5	4	121616407	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	18669768	121616407	69537869	40	66934										
PRMT10	0	genome.wustl.edu	37	chr4	148575483	148575483	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	taagcaaagcaatttctgtaGattccaatatacatgtctgc	6	8	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	148575483	148575483	G	C	SNP	PRMT10	ENST00000322396	human	ensembl	69_37n	-1	known	missense	c.1565	p.S522C	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169	358	0	0	193	90	31.69	-	-	-	C	148575483	G	C	148575483	3	2	771	1	0	0	0	0	1	0	0	0	12617	942	33	2	988	2	PRMT10	4	148575483	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	26959076	148575483	42578793	41	66935										
WDR17	0	genome.wustl.edu	37	chr4	177049888	177049888	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctttttccctgatctgactaGattctcaagtgggtgtttta	8	8	2	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	4	177049888	177049888	G	C	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	splice_site	c.863-1	e6-1	1.000	-	-	-	no_errors	WDR17	HGNC	ENSG00000150627	180	0	0	120	53	30.64	-	-	-	C	177049888	G	C	177049888	5	2	771	1	0	0	0	0	0	0	1	0	17374	956	33	2	884	2	WDR17	4	177049888	Splice_Site	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	28474405	177049888	14104388	42	66936										
TRIO	0	genome.wustl.edu	37	chr5	14399162	14399162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtgggagaagcaagtaccttTataaaagcaaattgtttgta	10	4	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	14399162	14399162	T	C	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.4597	p.Y1533H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	306	0	0	193	86	30.82	-	-	-	C	14399162	T	C	14399162	3	2	771	1	0	0	0	0	1	0	0	0	16648	1754	61	5	4715	5	TRIO	5	14399162	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09		14399162	166516098	43	66937										
PDE4D	0	genome.wustl.edu	37	chr5	58270700	58270700	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtctgactcaccatcttcctCtaaagttagttcaaactgga	6	11	5	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	58270700	58270700	C	G	SNP	PDE4D	ENST00000340635	human	ensembl	69_37n	-1	known	missense	c.2221	p.E741Q	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448	344	0	0	137	71	34.13	-	-	-	G	58270700	C	G	58270700	3	3	771	1	0	0	0	0	1	0	0	0	11715	922	32	2	212	2	PDE4D	5	58270700	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	43871538	58270700	122644560	44	66938										
TRIM23	0	genome.wustl.edu	37	chr5	64892251	64892251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcatttttaactctcaccttGagtattgaggtaataatgtt	6	6	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	64892251	64892251	G	C	SNP	TRIM23	ENST00000231524	human	ensembl	69_37n	-1	known	missense	c.1417	p.Q473E	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	342	0	0	208	75	26.5	-	-	-	C	64892251	G	C	64892251	3	2	771	1	0	0	0	0	1	0	0	0	16593	1299	45	2	386	2	TRIM23	5	64892251	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	6621551	64892251	116023009	45	66939										
TTC37	0	genome.wustl.edu	37	chr5	94863730	94863730	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agtctacctgatcaagcgtaCgaattgcttcctctgaagag	9	10	3	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	94863730	94863730	C	G	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.1121	p.R374P	0.008	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	172	0	0	122	40	24.69	-	-	-	G	94863730	C	G	94863730	3	3	771	1	0	0	0	0	1	0	0	0	16802	536	19	3	3697	3	TTC37	5	94863730	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	29971479	94863730	86051530	46	66940										
PCDHB1	0	genome.wustl.edu	37	chr5	140431703	140431703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttgacaattacggcggtggaCggcgggtccccgcctaagtc	14	12	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	140431703	140431703	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	silent	c.648	p.D216	0.339	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	48	0	0	21	6	22.22	-	-	-	T	140431703	C	T	140431703	2	4	771	1	0	0	0	0	0	0	0	1	11607	535	19	1		1	PCDHB1	5	140431703	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	45567973	140431703	40483557	47	66941										
SPARC	0	genome.wustl.edu	37	chr5	151047100	151047100	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agggtgaccaggacgttcttGagccagtcccgcatgcgcag	14	12	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	151047100	151047100	G	C	SNP	SPARC	ENST00000231061	human	ensembl	69_37n	-1	known	silent	c.513	p.L171	0.996	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	SPARC	HGNC	ENSG00000113140	178	0	0	77	22	22.22	-	-	-	C	151047100	G	C	151047100	2	2	771	1	0	0	0	0	0	0	0	1	15086	1277	45	2		2	SPARC	5	151047100	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	10615397	151047100	29868160	48	66942										
G3BP1	0	genome.wustl.edu	37	chr5	151178806	151178806	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	catctgtgaccagtaagaatCttccacccagtggagctgtt	9	11	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	151178806	151178806	C	G	SNP	G3BP1	ENST00000356245	human	ensembl	69_37n	1	known	missense	c.775	p.L259V	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907	237	0	0	161	40	19.9	-	-	-	G	151178806	C	G	151178806	3	3	771	1	0	0	0	0	1	0	0	0	6190	913	32	2	801	2	G3BP1	5	151178806	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	131706	151178806	29736454	49	66943										
FAM114A2	0	genome.wustl.edu	37	chr5	153409057	153409057	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttttttacttactgtgctctGaacagcagtagagatggtag	10	6	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	153409057	153409057	G	C	SNP	FAM114A2	ENST00000351797	human	ensembl	69_37n	-1	known	missense	c.487	p.Q163E	1.000	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147	285	0	0	192	49	20.33	-	-	-	C	153409057	G	C	153409057	3	2	771	1	0	0	0	0	1	0	0	0	5444	1299	45	2	1070	2	FAM114A2	5	153409057	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	2230251	153409057	27506203	50	66944										
ATP10B	0	genome.wustl.edu	37	chr5	160076224	160076224	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gttgttgggtttctcacacaCgatggtattgtggaaaagct	12	6	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	160076224	160076224	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.715	p.V239M	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	493	0	0	391	109	21.8	-	-	-	T	160076224	C	T	160076224	3	4	771	1	0	0	0	0	1	0	0	0	1121	536	19	1	3746	1	ATP10B	5	160076224	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	6667167	160076224	20839036	51	66945										
DOK3	0	genome.wustl.edu	37	chr5	176931433	176931433	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tttcctggacgtgggtggctCaggtcctggtggcatctccc	14	12	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	176931433	176931433	C	G	SNP	DOK3	ENST00000357198	human	ensembl	69_37n	-1	known	missense	c.1042	p.E348Q	0.001	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	58	0	0	34	12	26.09	-	-	-	G	176931433	C	G	176931433	3	3	771	1	0	0	0	0	1	0	0	0	4733	835	29	2	804	2	DOK3	5	176931433	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	16855209	176931433	3983827	52	66946										
COL23A1	0	genome.wustl.edu	37	chr5	177669088	177669088	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggtggtcccggctcgcccttCtggcccttcactcctttccg	10	18	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	5	177669088	177669088	C	G	SNP	COL23A1	ENST00000390654	human	ensembl	69_37n	-1	known	missense	c.1536	p.Q512H	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767	105	0	0	46	11	19.3	-	-	-	G	177669088	C	G	177669088	3	3	771	1	0	0	0	0	1	0	0	0	3712	912	32	2	98	2	COL23A1	5	177669088	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	737655	177669088	3246172	53	66947										
PHACTR1	0	genome.wustl.edu	37	chr6	13283675	13283675	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcagtcaaaggcccacggtgGaagagcttcgggaaagaaag	14	8	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	13283675	13283675	G	A	SNP	PHACTR1	ENST00000415087	human	ensembl	69_37n	1	known	nonsense	c.1035	p.W345*	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHACTR1	HGNC	ENSG00000112137	173	0	0	103	30	22.56	-	-	-	A	13283675	G	A	13283675	4	1	771	1	0	0	0	0	0	1	0	0	11883	1175	41	2	1573	2	PHACTR1	6	13283675	Nonsense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		13283675	157831392	54	66948										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123759	26123759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttacttggaatgtttacttgGagctggtgtacttggtgacg	13	5	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	26123759	26123759	G	A	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.374	p.S125F	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	356	0	0	282	80	22.1	-	-	-	A	26123759	G	A	26123759	3	1	771	1	0	0	0	0	1	0	0	0	7193	1174	41	2	10	2	HIST1H2BC	6	26123759	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	12840084	26123759	144991308	55	66949										
NOTCH4	0	genome.wustl.edu	37	chr6	32190561	32190561	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtcaggaaactggcacgtctCacccaggaagccaggggcac	13	13	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	32190561	32190561	C	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.178	p.E60Q	1.000	smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	104	0	0	60	19	24.05	-	-	-	G	32190561	C	G	32190561	3	3	771	1	0	0	0	0	1	0	0	0	10623	835	29	2	5945	2	NOTCH4	6	32190561	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	6066802	32190561	138924506	56	66950										
WDR46	0	genome.wustl.edu	37	chr6	33247580	33247580	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttctttccctgctccagggaGatgacatccacctcggccag	9	15	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	33247580	33247580	G	A	SNP	WDR46	ENST00000374617	human	ensembl	69_37n	-1	known	silent	c.1581	p.I527	0.999	NULL	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057	163	0	0	101	34	25.19	-	-	-	A	33247580	G	A	33247580	2	1	771	1	0	0	0	0	0	0	0	1	17396	932	33	2		2	WDR46	6	33247580	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1057019	33247580	137867487	57	66951										
ZNF318	0	genome.wustl.edu	37	chr6	43306894	43306894	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctgctgttcaaaggagaagtAgaagaggtgtctgaactttt	12	5	2	4			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	43306894	43306894	A	C	SNP	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	silent	c.4842	p.S1614	0.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	321	0	0	237	59	19.93	-	-	-	C	43306894	A	C	43306894	2	2	771	1	0	0	0	0	0	0	0	1	17932	407	15	5		5	ZNF318	6	43306894	Silent	SNP	A	TCGA-E2-A159-01A-11D-A10Y-09	10059314	43306894	127808173	58	66952										
SLC35B2	0	genome.wustl.edu	37	chr6	44223268	44223268	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atcagtgccagcactcggttCattagcaccaggaactgcga	10	12	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	44223268	44223268	C	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.474	p.M158I	1.000	pfam_UAA	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	199	0	0	87	31	26.27	-	-	-	T	44223268	C	T	44223268	3	4	771	1	0	0	0	0	1	0	0	0	14665	826	29	2	828	2	SLC35B2	6	44223268	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	916374	44223268	126891799	59	66953										
CDC5L	0	genome.wustl.edu	37	chr6	44358031	44358031	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	attctgaaagcagcggtaatGaaatatgggaaaaatcagtg	11	4	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	44358031	44358031	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	69_37n	1	known	missense	c.72	p.M24I	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	398	0	0	326	97	22.93	-	-	-	A	44358031	G	A	44358031	3	1	771	1	0	0	0	0	1	0	0	0	3111	1290	45	2	78	2	CDC5L	6	44358031	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	134763	44358031	126757036	60	66954										
AIM1	0	genome.wustl.edu	37	chr6	106967869	106967869	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	aatgccacttttagaacttgGaggagaaacaacccctcctt	7	11	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	106967869	106967869	G	C	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.1562	p.G521A	0.010	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	65	0	0	48	13	21.31	-	-	-	C	106967869	G	C	106967869	3	2	771	1	0	0	0	0	1	0	0	0	430	1174	41	2	1568	2	AIM1	6	106967869	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	62609838	106967869	64147198	61	66955										
SLC2A12	0	genome.wustl.edu	37	chr6	134349970	134349970	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acaagaagagtggcagggatGgtgctaatgaccttgacgac	14	7	0	4			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	134349970	134349970	G	T	SNP	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	silent	c.993	p.T331	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	166	1	0.6	102	37	26.62	-	-	-	T	134349970	G	T	134349970	2	4	771	1	0	0	0	0	0	0	0	1	14630	1335	47	4		4	SLC2A12	6	134349970	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	27382101	134349970	36765097	62	66956										
UTRN	0	genome.wustl.edu	37	chr6	144761487	144761487	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tatcttaatttttttctctaGagtttgcaaagtgatcttga	6	5	3	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	144761487	144761487	G	C	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	splice_site	c.1393-1	e12-1	1.000	-	-	-	no_errors	UTRN	HGNC	ENSG00000152818	348	0	0	281	69	19.71	-	-	-	C	144761487	G	C	144761487	5	2	771	1	0	0	0	0	0	0	1	0	17200	956	33	2	1438	2	UTRN	6	144761487	Splice_Site	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	10411517	144761487	26353580	63	66957										
RAET1G	0	genome.wustl.edu	37	chr6	150240756	150240756	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agtatgtccaccacctctctCagtactgggttctgtgcttt	8	12	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	150240756	150240756	C	T	SNP	RAET1G	ENST00000367360	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	0.016	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1G	HGNC	ENSG00000203722	1414	0	0	892	208	18.91	-	-	-	T	150240756	C	T	150240756	2	4	771	1	0	0	0	0	0	0	0	1	13083	813	29	2		2	RAET1G	6	150240756	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	5479269	150240756	20874311	64	66958										
SYNE1	0	genome.wustl.edu	37	chr6	152599233	152599233	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggaaccctcacctgcatgttGagctgcttatcatgcagggc	11	12	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	152599233	152599233	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.18564	p.L6188	0.998	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	100	0	0	54	18	25	-	-	-	T	152599233	G	T	152599233	2	4	771	1	0	0	0	0	0	0	0	1	15537	1277	45	2		2	SYNE1	6	152599233	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	2358477	152599233	18515834	65	66959										
ARID1B	0	genome.wustl.edu	37	chr6	157528895	157528895	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggctttgctagccatggccaGagtggacgaaaaccgctcgg	14	11	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	6	157528895	157528895	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.6740	p.R2247K	0.995	superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	108	0	0	52	18	25.71	-	-	-	A	157528895	G	A	157528895	3	1	771	1	0	0	0	0	1	0	0	0	916	942	33	2	6698	2	ARID1B	6	157528895	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	4929662	157528895	13586172	66	66960										
MACC1	0	genome.wustl.edu	37	chr7	20199737	20199737	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cttcctgttatttcttagttGagttatgtcatccaaaaatg	6	7	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	20199737	20199737	G	C	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	missense	c.247	p.Q83E	0.962	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	134	0	0	104	38	26.76	-	-	-	C	20199737	G	C	20199737	3	2	771	1	0	0	0	0	1	0	0	0	9210	1299	45	2	2323	2	MACC1	7	20199737	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		20199737	138938926	67	66961										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97937087	97937087	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acatctccctgtgcaaagctGagtaaggtcttgttggagcc	11	10	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	97937087	97937087	G	C	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	silent	c.1077	p.L359	0.088	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	414	0	0	209	69	24.73	-	-	-	C	97937087	G	C	97937087	2	2	771	1	0	0	0	0	0	0	0	1	1306	1277	45	2		2	BAIAP2L1	7	97937087	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	77737350	97937087	61201576	68	66962										
STAG3	0	genome.wustl.edu	37	chr7	99799582	99799582	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtgcccacagaagcagctgtCgagtttgagggacagaatgg	15	8	0	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	99799582	99799582	C	A	SNP	STAG3	ENST00000317296	human	ensembl	69_37n	1	known	nonsense	c.2312	p.S771*	0.050	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923	307	0	0	240	71	22.83	-	-	-	A	99799582	C	A	99799582	4	1	771	1	0	0	0	0	0	1	0	0	15335	893	31	3	2398	3	STAG3	7	99799582	Nonsense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1862495	99799582	59339081	69	66963										
TFR2	0	genome.wustl.edu	37	chr7	100238598	100238598	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggggagggggacggctctcaCccccagtgaagatcagcagg	17	11	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	100238598	100238598	C	A	SNP	TFR2	ENST00000223051	human	ensembl	69_37n	-1	known	splice_site	c.286+1	e2+1	1.000	-	-	-	no_errors	TFR2	HGNC	ENSG00000106327	38	0	0	23	11	32.35	-	-	-	A	100238598	C	A	100238598	5	1	771	1	0	0	0	0	0	0	1	0	15906	521	18	4	2186	4	TFR2	7	100238598	Splice_Site	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	439016	100238598	58900065	70	66964										
LAMB1	0	genome.wustl.edu	37	chr7	107594139	107594139	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gacactggcaaggctgacacGaccccccaacttctgatgga	10	14	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	107594139	107594139	G	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	nonsense	c.2915	p.S972*	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	180	0	0	116	46	28.4	-	-	-	T	107594139	G	T	107594139	4	4	771	1	0	0	0	0	0	1	0	0	8664	1059	37	3	2497	3	LAMB1	7	107594139	Nonsense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	7355541	107594139	51544524	71	66965										
FASTK	0	genome.wustl.edu	37	chr7	150774081	150774081	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agcacccggccgtcccggcaGaaatgccagcgttcccgcaa	11	17	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	7	150774081	150774081	G	A	SNP	FASTK	ENST00000297532	human	ensembl	69_37n	-1	known	silent	c.1461	p.F487	1.000	pfam_RAP,smart_RAP	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896	67	0	0	51	16	23.53	-	-	-	A	150774081	G	A	150774081	2	1	771	1	0	0	0	0	0	0	0	1	5730	933	33	2		2	FASTK	7	150774081	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	43179942	150774081	8364582	72	66966										
SCARA3	0	genome.wustl.edu	37	chr8	27528720	27528720	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cccggggtctccagggccctCagggcctcagggaaaaccgg	15	15	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	8	27528720	27528720	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	69_37n	1	known	missense	c.1673	p.S558L	0.317	pfam_Collagen	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077	12	0	0	9	5	35.71	-	-	-	T	27528720	C	T	27528720	3	4	771	1	0	0	0	0	1	0	0	0	13966	838	29	2	1695	2	SCARA3	8	27528720	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		27528720	118835302	73	66967										
DPY19L4	0	genome.wustl.edu	37	chr8	95751734	95751734	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtatccggaacttattgctaGcattttatatcaagccactg	7	9	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	8	95751734	95751734	G	C	SNP	DPY19L4	ENST00000414645	human	ensembl	69_37n	1	known	missense	c.437	p.S146T	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162	350	0	0	381	95	19.96	-	-	-	C	95751734	G	C	95751734	3	2	771	1	0	0	0	0	1	0	0	0	4778	971	34	4	455	4	DPY19L4	8	95751734	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	68223014	95751734	50612288	74	66968										
SYBU	0	genome.wustl.edu	37	chr8	110587700	110587700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ccacactgccctcctcctgaCccatgactatgggcagcagc	8	18	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	8	110587700	110587700	C	T	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.1427	p.G476D	0.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	336	0	0	193	69	26.24	-	-	-	T	110587700	C	T	110587700	3	4	771	1	0	0	0	0	1	0	0	0	15518	507	18	4	568	4	SYBU	8	110587700	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	14835966	110587700	35776322	75	66969										
FLJ43860	0	genome.wustl.edu	37	chr8	142506533	142506533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggtgtgaccatctgtccctgCgggcagagtcctggtgtacc	14	12	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	8	142506533	142506533	C	T	SNP	FLJ43860	ENST00000521161	human	ensembl	69_37n	-1	putative	missense	c.44	p.R15H	0.000	NULL	NULL	-	no_stop_codon	AC100803.1	Clone_based_vega_gene	ENSG00000226807	462	0	0	236	106	30.81	-	-	-	T	142506533	C	T	142506533	3	4	771	1	0	0	0	0	1	0	0	0	5976	768	27	1	3923	1	FLJ43860	8	142506533	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	31918833	142506533	3857489	76	66970										
TSNARE1	0	genome.wustl.edu	37	chr8	143356182	143356182	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ccaggagctggcgggctgccTccgcatgcgaggacgcagcc	16	15	0	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	8	143356182	143356182	T	G	SNP	TSNARE1	ENST00000307180	human	ensembl	69_37n	-1	known	missense	c.1406	p.E469A	0.997	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	34	0	0	27	6	18.18	-	-	-	G	143356182	T	G	143356182	3	3	771	1	0	0	0	0	1	0	0	0	16726	1551	54	5	143	5	TSNARE1	8	143356182	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	849649	143356182	3007840	77	66971										
RFX3	0	genome.wustl.edu	37	chr9	3263041	3263041	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gggccaggtgattaagcgacGtgtatcttcgcagagtctgg	15	8	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	3263041	3263041	G	T	SNP	RFX3	ENST00000382004	human	ensembl	69_37n	-1	known	missense	c.1499	p.T500K	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	320	1	0.31	146	45	23.56	-	-	-	T	3263041	G	T	3263041	3	4	771	1	0	0	0	0	1	0	0	0	13347	1145	40	3	926	3	RFX3	9	3263041	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		3263041	137950390	78	66972										
NFIB	0	genome.wustl.edu	37	chr9	14146751	14146751	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acttggagaggggtaaaagtCtcctgtaggacttggttcca	13	7	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	14146751	14146751	C	G	SNP	NFIB	ENST00000397581	human	ensembl	69_37n	-1	known	missense	c.862	p.D288H	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIB	HGNC	ENSG00000147862	653	1	0.15	535	146	21.44	-	-	-	G	14146751	C	G	14146751	3	3	771	1	0	0	0	0	1	0	0	0	10443	913	32	2	416	2	NFIB	9	14146751	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	10883710	14146751	127066680	79	66973										
FAM22F	0	genome.wustl.edu	37	chr9	97082696	97082696	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cacttcaggggggatctcctCagggaccttggtctccgctg	13	13	4	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	97082696	97082696	C	T	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.1162	p.E388K	0.469	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	335	0	0	172	50	22.52	-	-	-	T	97082696	C	T	97082696	3	4	771	1	0	0	0	0	1	0	0	0	5587	835	29	2	1120	2	FAM22F	9	97082696	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	82935945	97082696	44130735	80	66974										
CORO2A	0	genome.wustl.edu	37	chr9	100890527	100890527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgttggagggtatatgtcctCttggtaggattctgactgca	13	6	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	100890527	100890527	C	T	SNP	CORO2A	ENST00000343933	human	ensembl	69_37n	-1	known	missense	c.1096	p.E366K	1.000	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789	425	1	0.23	270	86	24.09	-	-	-	T	100890527	C	T	100890527	3	4	771	1	0	0	0	0	1	0	0	0	3786	922	32	2	493	2	CORO2A	9	100890527	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	3807831	100890527	40322904	81	66975										
TXNDC8	0	genome.wustl.edu	37	chr9	113065819	113065819	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gcttacattaattcttgagtCttggcttccaattttttagc	6	8	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	113065819	113065819	C	G	SNP	TXNDC8	ENST00000374511	human	ensembl	69_37n	-1	known	missense	c.366	p.K122N	1.000	NULL	pfam_Thioredoxin_domain	-	no_errors	TXNDC8	HGNC	ENSG00000204193	96	0	0	76	30	28.3	-	-	-	G	113065819	C	G	113065819	3	3	771	1	0	0	0	0	1	0	0	0	16898	928	32	2		2	TXNDC8	9	113065819	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	12175292	113065819	28147612	82	66976										
NPDC1	0	genome.wustl.edu	37	chr9	139934476	139934476	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtctccgtcctcattctcctCatccgaggaggccgtgtcca	9	16	4	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	139934476	139934476	C	G	SNP	NPDC1	ENST00000371600	human	ensembl	69_37n	-1	known	missense	c.1066	p.E356Q	0.867	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281	175	0	0	66	28	29.79	-	-	-	G	139934476	C	G	139934476	3	3	771	1	0	0	0	0	1	0	0	0	10645	835	29	2	153	2	NPDC1	9	139934476	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	26868657	139934476	1278955	83	66977										
MAN1B1	0	genome.wustl.edu	37	chr9	139995528	139995528	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acgtggacgtcaacctgtttGagagcacgatccgcatcctg	11	12	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	9	139995528	139995528	G	C	SNP	MAN1B1	ENST00000371589	human	ensembl	69_37n	1	known	missense	c.988	p.E330Q	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	235	0	0	106	42	28.38	-	-	-	C	139995528	G	C	139995528	3	2	771	1	0	0	0	0	1	0	0	0	9283	1291	45	2	1014	2	MAN1B1	9	139995528	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	61052	139995528	1217903	84	66978										
TUBAL3	0	genome.wustl.edu	37	chr10	5436386	5436386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtgcctcctccaaagcttcgGaaaatcaaaaatccctgaag	7	12	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	10	5436386	5436386	G	T	SNP	TUBAL3	ENST00000380419	human	ensembl	69_37n	-1	known	missense	c.435	p.F145L	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462	90	0	0	112	25	18.25	-	-	-	T	5436386	G	T	5436386	3	4	771	1	0	0	0	0	1	0	0	0	16848	1165	41	2	909	2	TUBAL3	10	5436386	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		5436386	130098361	85	66979										
CUBN	0	genome.wustl.edu	37	chr10	16955917	16955917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gattctccactcgcagatccGgccatgaggatttgggttcg	12	11	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	10	16955917	16955917	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.7426	p.R2476W	0.962	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	205	1	0.49	172	34	16.5	-	-	-	A	16955917	G	A	16955917	3	1	771	1	0	0	0	0	1	0	0	0	4082	1115	39	1	3525	1	CUBN	10	16955917	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	11519531	16955917	118578830	86	66980										
CDHR1	0	genome.wustl.edu	37	chr10	85962805	85962805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ccacggtcacggtcaatgtgGaggatgttcaggacatggcc	14	10	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	10	85962805	85962805	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	498	1	0.2	261	63	19.38	-	-	-	A	85962805	G	A	85962805	3	1	771	1	0	0	0	0	1	0	0	0	3147	1175	41	2	739	2	CDHR1	10	85962805	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	69006888	85962805	49571942	87	66981										
TNKS2	0	genome.wustl.edu	37	chr10	93572805	93572805	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	caaatgtccaagcacgtgatGatgggggccttattcctctt	10	10	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	10	93572805	93572805	G	A	SNP	TNKS2	ENST00000371627	human	ensembl	69_37n	1	known	missense	c.265	p.D89N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	474	0	0	233	111	32.27	-	-	-	A	93572805	G	A	93572805	3	1	771	1	0	0	0	0	1	0	0	0	16416	1290	45	2	271	2	TNKS2	10	93572805	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	7610000	93572805	41961942	88	66982										
ANO9	0	genome.wustl.edu	37	chr11	419605	419605	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acagtagagttgccttctttCaggcatgggctatagcggta	12	8	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	419605	419605	C	G	SNP	ANO9	ENST00000332826	human	ensembl	69_37n	-1	known	silent	c.1911	p.L637	0.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	154	0	0	49	28	35.9	-	-	-	G	419605	C	G	419605	2	3	771	1	0	0	0	0	0	0	0	1	703	813	29	2		2	ANO9	11	419605	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		419605	134586911	89	66983										
C11orf20	0	genome.wustl.edu	37	chr11	64068205	64068205	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cactcgggacctgtggaccaCgaccacgctgtcccaggcac	11	17	0	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	64068205	64068205	C	G	SNP	C11orf20	ENST00000328404	human	ensembl	69_37n	1	known	missense	c.98	p.T33R	0.063	NULL	NULL	-	no_errors	C11orf20	HGNC	ENSG00000219435	53	0	0	24	12	33.33	-	-	-	G	64068205	C	G	64068205	3	3	771	1	0	0	0	0	1	0	0	0	1644	536	19	3	104	3	C11orf20	11	64068205	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	63648600	64068205	70938311	90	66984										
C11orf20	0	genome.wustl.edu	37	chr11	64072038	64072038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	accagttagggatcggcaggGaccacttcctgactaaggag	13	10	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	64072038	64072038	G	A	SNP	C11orf20	ENST00000328404	human	ensembl	69_37n	1	known	missense	c.523	p.D175N	0.091	NULL	NULL	-	no_errors	C11orf20	HGNC	ENSG00000219435	114	1	0.86	46	14	23.33	-	-	-	A	64072038	G	A	64072038	3	1	771	1	0	0	0	0	1	0	0	0	1644	1174	41	2	541	2	C11orf20	11	64072038	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	3833	64072038	70934478	91	66985										
TSGA10IP	0	genome.wustl.edu	37	chr11	65714666	65714666	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cagatgtccgggctgtgcttCagccaagctccccaacccct	9	17	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	65714666	65714666	C	A	SNP	TSGA10IP	ENST00000528291	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TSGA10IP	HGNC	ENSG00000175513	48	0	0	62	12	16.22	-	-	-	A	65714666	C	A	65714666	1	1	771	0	1	0	0	0	0	0	0	0	16714	827	29	2		2	TSGA10IP	11	65714666	RNA	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1642628	65714666	69291850	92	66986										
RBM14	0	genome.wustl.edu	37	chr11	66392812	66392812	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tttcaggctcctatggggctCagtcggctgctgcggccact	13	13	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	66392812	66392812	C	T	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	nonsense	c.1465	p.Q489*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	54	0	0	25	9	26.47	-	-	-	T	66392812	C	T	66392812	4	4	771	1	0	0	0	0	0	1	0	0	13198	827	29	2	1471	2	RBM14	11	66392812	Nonsense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	678146	66392812	68613704	93	66987										
UVRAG	0	genome.wustl.edu	37	chr11	75590926	75590926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttcattttcatgagcagaatCccacgtggcgaagtctcgat	9	10	3	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	75590926	75590926	C	T	SNP	UVRAG	ENST00000356136	human	ensembl	69_37n	1	known	missense	c.274	p.P92S	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	UVRAG	HGNC	ENSG00000198382	363	0	0	275	51	15.64	-	-	-	T	75590926	C	T	75590926	3	4	771	1	0	0	0	0	1	0	0	0	17205	855	30	2	288	2	UVRAG	11	75590926	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	9198114	75590926	59415590	94	66988										
THRSP	0	genome.wustl.edu	37	chr11	77775298	77775298	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctccagcctccatcacatccTcatgcacctcaccgagaaag	5	18	3	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	77775298	77775298	T	C	SNP	THRSP	ENST00000281030	human	ensembl	69_37n	1	known	missense	c.371	p.L124P	1.000	pfam_Spot_14	pfam_Spot_14	-	no_errors	THRSP	HGNC	ENSG00000151365	235	0	0	167	30	15.23	-	-	-	C	77775298	T	C	77775298	3	2	771	1	0	0	0	0	1	0	0	0	15971	1551	54	5	373	5	THRSP	11	77775298	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	2184372	77775298	57231218	95	66989										
NPAT	0	genome.wustl.edu	37	chr11	108031617	108031617	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcaaacttgccttaattttcTtctttttcattggtattgat	4	7	4	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	108031617	108031617	T	C	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	missense	c.4196	p.K1399R	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	339	0	0	250	87	25.82	-	-	-	C	108031617	T	C	108031617	3	2	771	1	0	0	0	0	1	0	0	0	10638	1609	56	5	95	5	NPAT	11	108031617	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	30256319	108031617	26974899	96	66990										
NPAT	0	genome.wustl.edu	37	chr11	108032049	108032049	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tatcagcaagcctacttactGagctgtgcctctgtatatcc	7	12	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	108032049	108032049	G	C	SNP	NPAT	ENST00000278612	human	ensembl	69_37n	-1	known	nonsense	c.3764	p.S1255*	0.998	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	256	0	0	209	76	26.57	-	-	-	C	108032049	G	C	108032049	4	2	771	1	0	0	0	0	0	1	0	0	10638	1294	45	2	527	2	NPAT	11	108032049	Nonsense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	432	108032049	26974467	97	66991										
CCDC84	0	genome.wustl.edu	37	chr11	118885784	118885784	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gaccatcctatgaagaatttCttaaagaaagtaagtaaact	6	6	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	11	118885784	118885784	C	G	SNP	CCDC84	ENST00000334418	human	ensembl	69_37n	1	known	missense	c.796	p.L266V	1.000	NULL	NULL	-	no_errors	CCDC84	HGNC	ENSG00000186166	91	0	0	103	36	25.9	-	-	-	G	118885784	C	G	118885784	3	3	771	1	0	0	0	0	1	0	0	0	2885	913	32	2	830	2	CCDC84	11	118885784	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	10853735	118885784	16120732	98	66992										
PHB2	0	genome.wustl.edu	37	chr12	7076337	7076337	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgggctgacacactcaccgtCttggagatattctgggctgc	12	11	3	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	7076337	7076337	C	T	SNP	PHB2	ENST00000399433	human	ensembl	69_37n	-1	known	silent	c.786	p.K262	1.000	NULL	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021	348	0	0	127	52	28.57	-	-	-	T	7076337	C	T	7076337	2	4	771	1	0	0	0	0	0	0	0	1	11889	912	32	2		2	PHB2	12	7076337	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		7076337	126775558	99	66993										
TMTC1	0	genome.wustl.edu	37	chr12	29709801	29709801	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cccacttacttgaggagattCcccagattgaaaagagcccg	9	12	0	5			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	29709801	29709801	C	T	SNP	TMTC1	ENST00000256062	human	ensembl	69_37n	-1	known	silent	c.1341	p.G447	0.811	pfam_PIK-rel_kinase_FAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	436	0	0	162	63	28	-	-	-	T	29709801	C	T	29709801	2	4	771	1	0	0	0	0	0	0	0	1	16355	842	30	2		2	TMTC1	12	29709801	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	22633464	29709801	104142094	100	66994										
ACVR1B	0	genome.wustl.edu	37	chr12	52377883	52377883	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acagtgacaattgaggggatGattaagctggccttgtctgc	13	7	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	52377883	52377883	G	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	missense	c.912	p.M304I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	277	0	0	82	58	41.43	-	-	-	T	52377883	G	T	52377883	3	4	771	1	0	0	0	0	1	0	0	0	221	1290	45	2	1057	2	ACVR1B	12	52377883	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	22668082	52377883	81474012	101	66995										
ACVR1B	0	genome.wustl.edu	37	chr12	52380701	52380701	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctcgggcttgtatattgggaGattgctcgaagatgcaattc	12	7	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	52380701	52380701	G	C	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	missense	c.1236	p.E412D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	517	0	0	240	129	34.86	-	-	-	C	52380701	G	C	52380701	3	2	771	1	0	0	0	0	1	0	0	0	221	933	33	2	1389	2	ACVR1B	12	52380701	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	2818	52380701	81471194	102	66996										
TARBP2	0	genome.wustl.edu	37	chr12	53895943	53895943	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cctaatttcaccttccgggtCaccgttggcgacaccagctg	9	15	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	53895943	53895943	C	T	SNP	TARBP2	ENST00000550407	human	ensembl	69_37n	1	putative	missense	c.109	p.H37Y	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TARBP2	HGNC	ENSG00000139546	194	0	0	60	19	24.05	-	-	-	T	53895943	C	T	53895943	3	4	771	1	0	0	0	0	1	0	0	0	15648	813	29	2	204	2	TARBP2	12	53895943	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1515242	53895943	79955952	103	66997										
OS9	0	genome.wustl.edu	37	chr12	58112055	58112055	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	aagaagaggaggatgaggatGaggatgaggatgaagatgag	19	0	0	8			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	58112055	58112055	G	A	SNP	OS9	ENST00000315970	human	ensembl	69_37n	1	known	missense	c.1261	p.E421K	0.648	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	1098	0	0	454	179	28.23	-	-	-	A	58112055	G	A	58112055	3	1	771	1	0	0	0	0	1	0	0	0	11345	1291	45	2	1303	2	OS9	12	58112055	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	4216112	58112055	75739840	104	66998										
MLXIP	0	genome.wustl.edu	37	chr12	122516984	122516984	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gaacctccgcgccgccagcaGatcatccacagcggccactt	9	18	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	12	122516984	122516984	G	C	SNP	MLXIP	ENST00000319080	human	ensembl	69_37n	1	known	missense	c.225	p.Q75H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLXIP	HGNC	ENSG00000175727	46	0	0	9	4	30.77	-	-	-	C	122516984	G	C	122516984	3	2	771	1	0	0	0	0	1	0	0	0	9707	933	33	2	227	2	MLXIP	12	122516984	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	64404929	122516984	11334911	105	66999										
RNF6	0	genome.wustl.edu	37	chr13	26793693	26793693	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctcttctctgtggagacgctCttgctgccatcttctctcat	7	14	6	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	13	26793693	26793693	C	T	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	missense	c.94	p.E32K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	507	0	0	241	101	29.53	-	-	-	T	26793693	C	T	26793693	3	4	771	1	0	0	0	0	1	0	0	0	13584	922	32	2	1975	2	RNF6	13	26793693	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		26793693	88376185	106	67000										
SLC7A1	0	genome.wustl.edu	37	chr13	30091320	30091320	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttgctctcgggctgcctccaGatgacgcccgtgaccacggc	12	16	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	13	30091320	30091320	G	A	SNP	SLC7A1	ENST00000380752	human	ensembl	69_37n	-1	known	silent	c.1638	p.I546	0.997	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514	67	0	0	21	7	25	-	-	-	A	30091320	G	A	30091320	2	1	771	1	0	0	0	0	0	0	0	1	14781	932	33	2		2	SLC7A1	13	30091320	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	3297627	30091320	85078558	107	67001										
RB1	0	genome.wustl.edu	37	chr13	48955532	48955532	+	Missense_Mutation	SNP	T	T	A													0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	caagagaaatgataaaacatTtagaacgatgtgaacatcga							TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	13	48955532	48955532	T	A	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	missense	c.1648	p.L550I	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	226	0	0	115	42	26.75	-	-	-	A	48955532	T	A	48955532	3	1	771	1	0	0	0	0	1	0	0	0	13181	1838	64	5	1714	5	RB1	13	48955532	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	18864212	48955532	66214346	108	67002	483	2								
RB1	0	genome.wustl.edu	37	chr13	48955534	48955534	+	Frame_Shift_Del	DEL	A	A	-													0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agagaaatgataaaacatttAgaacgatgtgaacatcgaat							TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	13	48955534	48955534	A	-	DEL	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_del	c.1650	p.E551fs	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	222	0	0	113	38	24.84	-	-	-	-	48955534	A	-	48955534	7	5	771	1	0	1	0	1	0	0	0	0	13181	417	15	0	1716	0	RB1	13	48955534	Frame_Shift_Del	DEL	A	TCGA-E2-A159-01A-11D-A10Y-09	2	48955534	66214344	109	67003	483	2								
NALCN	0	genome.wustl.edu	37	chr13	102030929	102030929	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atatttaattacctgtagcaCcaaagaaacccaaaggcaaa	5	9	0	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	13	102030929	102030929	C	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.367	p.V123L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	229	0	0	212	75	26.13	-	-	-	A	102030929	C	A	102030929	3	1	771	1	0	0	0	0	1	0	0	0	10220	507	18	4	5013	4	NALCN	13	102030929	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	53075395	102030929	13138949	110	67004										
NFKBIA	0	genome.wustl.edu	37	chr14	35873760	35873760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	catggagtccaggccgctgtCgtggcggtcgtccagtagcc	15	13	0	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	14	35873760	35873760	C	T	SNP	NFKBIA	ENST00000216797	human	ensembl	69_37n	-1	known	missense	c.91	p.D31N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIA	HGNC	ENSG00000100906	37	0	0	14	6	30	-	-	-	T	35873760	C	T	35873760	3	4	771	1	0	0	0	0	1	0	0	0	10449	884	31	1	886	1	NFKBIA	14	35873760	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		35873760	71475780	111	67005										
IVD	0	genome.wustl.edu	37	chr15	40710373	40710373	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttcccatgggccgctttcttCgagatgccaagctgtatgag	11	11	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	15	40710373	40710373	C	T	SNP	IVD	ENST00000487418	human	ensembl	69_37n	1	known	nonsense	c.1192	p.R398*	1.000	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928	250	0	0	80	42	34.43	-	-	-	T	40710373	C	T	40710373	4	4	771	1	0	0	0	0	0	1	0	0	7982	876	31	1	1238	1	IVD	15	40710373	Nonsense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		40710373	61821019	112	67006										
TGM5	0	genome.wustl.edu	37	chr15	43545083	43545083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	agggttggcgccgtctgtgtAattctcactccagtttccat	10	11	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	15	43545083	43545083	A	G	SNP	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	missense	c.736	p.Y246H	0.982	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	155	1	0.63	70	29	29.29	-	-	-	G	43545083	A	G	43545083	3	3	771	1	0	0	0	0	1	0	0	0	15928	362	13	5	1458	5	TGM5	15	43545083	Missense_Mutation	SNP	A	TCGA-E2-A159-01A-11D-A10Y-09	2834710	43545083	58986309	113	67007										
IGDCC3	0	genome.wustl.edu	37	chr15	65628154	65628154	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cccacacgtggctcacctctCattgtccgtgtcaattggga	9	14	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	15	65628154	65628154	C	G	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.550	p.E184Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	403	0	0	143	74	34.1	-	-	-	G	65628154	C	G	65628154	3	3	771	1	0	0	0	0	1	0	0	0	7622	835	29	2	1942	2	IGDCC3	15	65628154	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	22083071	65628154	36903238	114	67008										
MAP2K1	0	genome.wustl.edu	37	chr15	66774131	66774131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcctagtcaactcccgtgggGagatcaagctctgtgacttt	10	11	3	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	15	66774131	66774131	G	A	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	missense	c.607	p.E203K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	526	0	0	185	87	31.99	-	-	-	A	66774131	G	A	66774131	3	1	771	1	0	0	0	0	1	0	0	0	9307	1175	41	2	629	2	MAP2K1	15	66774131	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1145977	66774131	35757261	115	67009										
PKD1	0	genome.wustl.edu	37	chr16	2140301	2140301	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cccacctccttgaccttgctGaggcccatccagaggcgcag	10	17	0	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	16	2140301	2140301	G	C	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	silent	c.12429	p.L4143	1.000	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	82	0	0	30	15	33.33	-	-	-	C	2140301	G	C	2140301	2	2	771	1	0	0	0	0	0	0	0	1	12037	1277	45	2		2	PKD1	16	2140301	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		2140301	88214452	116	67010										
RLTPR	0	genome.wustl.edu	37	chr16	67682005	67682005	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtactgtcgttcctgaatctCgcaggcaccgacactgccct	9	15	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	16	67682005	67682005	C	T	SNP	RLTPR	ENST00000334583	human	ensembl	69_37n	1	known	silent	c.1122	p.L374	0.995	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753	154	0	0	71	30	29.7	-	-	-	T	67682005	C	T	67682005	2	4	771	1	0	0	0	0	0	0	0	1	13480	871	31	1		1	RLTPR	16	67682005	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	65541704	67682005	22672748	117	67011										
PRPF8	0	genome.wustl.edu	37	chr17	1554097	1554097	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gcaggaggcagggaaacggtCaggcatacaggtcctcccga	15	11	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	1554097	1554097	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	silent	c.7007	p.*2336	0.823	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	152	0	0	48	27	36	-	-	-	T	1554097	C	T	1554097	2	4	771	1	0	0	0	0	0	0	0	1	12656	837	29	2		2	PRPF8	17	1554097	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		1554097	79641113	118	67012										
TP53	0	genome.wustl.edu	37	chr17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cggctcatagggcaccaccaCactatgtcgaaaagtgtttc	9	12	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	7578203	7578203	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	454	0	0	210	99	32.04	-	-	-	T	7578203	C	T	7578203	3	4	771	1	0	0	0	0	1	0	0	0	16477	478	17	4	648	4	TP53	17	7578203	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	6024106	7578203	73617007	119	67013										
DNAH2	0	genome.wustl.edu	37	chr17	7667478	7667478	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tggaggaactgggggtcagcTtgcagctcgtggatgccctg	17	9	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	7667478	7667478	T	G	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.3223	p.L1075V	0.006	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	305	0	0	146	87	37.34	-	-	-	G	7667478	T	G	7667478	3	3	771	1	0	0	0	0	1	0	0	0	4638	1606	56	5	3297	5	DNAH2	17	7667478	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	89275	7667478	73527732	120	67014										
GPR179	0	genome.wustl.edu	37	chr17	36482587	36482587	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggggcaggggattttgctttCtggaaagaagtgatccagag	16	5	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	36482587	36482587	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.6865	p.E2289K	0.997	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	183	0	0	86	44	33.85	-	-	-	T	36482587	C	T	36482587	3	4	771	1	0	0	0	0	1	0	0	0	6724	922	32	2	242	2	GPR179	17	36482587	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	28815109	36482587	44712623	121	67015										
CASC3	0	genome.wustl.edu	37	chr17	38296935	38296935	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tagcgccggaggcggcggcaGcggctctctgccttcacagc	15	15	2	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	38296935	38296935	G	C	SNP	CASC3	ENST00000264645	human	ensembl	69_37n	1	known	missense	c.134	p.S45T	0.998	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349	13	0	0	5	5	50	-	-	-	C	38296935	G	C	38296935	3	2	771	1	0	0	0	0	1	0	0	0	2686	971	34	4	136	4	CASC3	17	38296935	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	1814348	38296935	42898275	122	67016										
OTOP2	0	genome.wustl.edu	37	chr17	72926762	72926762	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctcaccaccttggtcagcctGagcggctccatcatctaccg	8	17	4	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	17	72926762	72926762	G	C	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	1	known	silent	c.1032	p.L344	0.478	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	86	0	0	23	17	42.5	-	-	-	C	72926762	G	C	72926762	2	2	771	1	0	0	0	0	0	0	0	1	11379	1277	45	2		2	OTOP2	17	72926762	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	34629827	72926762	8268448	123	67017										
FBXO15	0	genome.wustl.edu	37	chr18	71740747	71740747	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tttgcgatactaagataaagGaccaggttgacaataaggta	10	5	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	18	71740747	71740747	G	A	SNP	FBXO15	ENST00000419743	human	ensembl	69_37n	-1	known	silent	c.1482	p.V494	0.167	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO15	HGNC	ENSG00000141665	367	0	0	182	79	30.15	-	-	-	A	71740747	G	A	71740747	2	1	771	1	0	0	0	0	0	0	0	1	5774	1161	41	2		2	FBXO15	18	71740747	Silent	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09		71740747	6336501	124	67018										
ZNF681	0	genome.wustl.edu	37	chr19	23926992	23926992	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gttaaaggctttcccacattCttcacatttgtatggtttct	6	9	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	23926992	23926992	C	G	SNP	ZNF681	ENST00000402377	human	ensembl	69_37n	-1	known	missense	c.1360	p.E454Q	0.828	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172	157	0	0	99	59	37.34	-	-	-	G	23926992	C	G	23926992	3	3	771	1	0	0	0	0	1	0	0	0	18184	922	32	2	581	2	ZNF681	19	23926992	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		23926992	35201991	125	67019										
EML2	0	genome.wustl.edu	37	chr19	46128000	46128000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgccccaaacatagaggttcCccccagagtcccccgtgacc	8	18	0	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	46128000	46128000	C	A	SNP	EML2	ENST00000587152	human	ensembl	69_37n	-1	known	missense	c.1421	p.G474V	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746	139	0	0	48	22	31.43	-	-	-	A	46128000	C	A	46128000	3	1	771	1	0	0	0	0	1	0	0	0	5134	623	22	4	1175	4	EML2	19	46128000	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	22201008	46128000	13000983	126	67020										
KLK15	0	genome.wustl.edu	37	chr19	51330233	51330233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cgggtgggggcaacgcgtggGtagcaccgcggggcgcacct	20	12	0	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	51330233	51330233	G	T	SNP	KLK15	ENST00000326856	human	ensembl	69_37n	-1	known	missense	c.382	p.P128T	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	42	0	0	29	6	17.14	-	-	-	T	51330233	G	T	51330233	3	4	771	1	0	0	0	0	1	0	0	0	8456	1261	44	4	400	4	KLK15	19	51330233	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	5202233	51330233	7798750	127	67021										
SIGLEC7	0	genome.wustl.edu	37	chr19	51649165	51649165	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	cagtcctagagggccagtctCtgcgcttggtctgtgctgtt	13	11	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	51649165	51649165	C	G	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	missense	c.814	p.L272V	0.009	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	349	0	0	184	52	21.85	-	-	-	G	51649165	C	G	51649165	3	3	771	1	0	0	0	0	1	0	0	0	14402	912	32	2	828	2	SIGLEC7	19	51649165	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	318932	51649165	7479818	128	67022										
CEACAM18	0	genome.wustl.edu	37	chr19	51983701	51983701	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ggataaggtccctgaggatgTtcaggaatacagctggtact	13	7	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	51983701	51983701	T	A	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	missense	c.350	p.V117D	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	265	0	0	154	47	23.38	-	-	-	A	51983701	T	A	51983701	3	1	771	1	0	0	0	0	1	0	0	0	3218	1725	60	5	360	5	CEACAM18	19	51983701	Missense_Mutation	SNP	T	TCGA-E2-A159-01A-11D-A10Y-09	334536	51983701	7145282	129	67023										
EPS8L1	0	genome.wustl.edu	37	chr19	55591557	55591557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtgacgcggtgatgccacccGgcaggagccgctcgttgctg	16	13	0	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	55591557	55591557	G	A	SNP	EPS8L1	ENST00000201647	human	ensembl	69_37n	1	known	missense	c.340	p.G114S	0.713	pfam_PTB,smart_PTyr_interaction_dom	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037	36	0	0	27	5	15.62	-	-	-	A	55591557	G	A	55591557	3	1	771	1	0	0	0	0	1	0	0	0	5232	1116	39	1	358	1	EPS8L1	19	55591557	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	3607856	55591557	3537426	130	67024										
PTPRH	0	genome.wustl.edu	37	chr19	55716783	55716783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	acaaacacccgggttcaagtCcatccacggtgatgttagtg	10	11	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	19	55716783	55716783	C	T	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	missense	c.530	p.G177E	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	508	0	0	323	105	24.48	-	-	-	T	55716783	C	T	55716783	3	4	771	1	0	0	0	0	1	0	0	0	12886	855	30	2	2885	2	PTPRH	19	55716783	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	125226	55716783	3412200	131	67025										
C20orf26	0	genome.wustl.edu	37	chr20	20269469	20269469	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gttccaaagaaattggctttCagctggcagcagctatgcta	10	9	1	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	20	20269469	20269469	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	nonsense	c.3013	p.Q1005*	0.997	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	193	0	0	114	36	24	-	-	-	T	20269469	C	T	20269469	4	4	771	1	0	0	0	0	0	1	0	0	2126	827	29	2	3131	2	C20orf26	20	20269469	Nonsense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		20269469	42756051	132	67026										
SYCP2	0	genome.wustl.edu	37	chr20	58494610	58494610	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ttcatcttttgaatttccttGactctgaataatgtccttgg	6	8	3	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	20	58494610	58494610	G	C	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	missense	c.340	p.Q114E	0.004	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	273	0	0	291	69	19.11	-	-	-	C	58494610	G	C	58494610	3	2	771	1	0	0	0	0	1	0	0	0	15524	1299	45	2	4412	2	SYCP2	20	58494610	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	38225141	58494610	4530910	133	67027										
ERG	0	genome.wustl.edu	37	chr21	39817464	39817464	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tcgctggaggaggacgcggtCatctctgtcttagccaggtg	15	10	3	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	21	39817464	39817464	C	T	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	missense	c.120	p.M40I	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	184	0	0	89	44	33.08	-	-	-	T	39817464	C	T	39817464	3	4	771	1	0	0	0	0	1	0	0	0	5259	826	29	2	1376	2	ERG	21	39817464	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		39817464	8312431	134	67028										
UPB1	0	genome.wustl.edu	37	chr22	24919738	24919738	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gtgaatgatgtctggaacttCaaggtaggtccccaggaccc	12	10	2	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	22	24919738	24919738	C	T	SNP	UPB1	ENST00000326010	human	ensembl	69_37n	1	known	silent	c.1068	p.F356	1.000	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024	218	0	0	75	39	34.21	-	-	-	T	24919738	C	T	24919738	2	4	771	1	0	0	0	0	0	0	0	1	17099	825	29	2		2	UPB1	22	24919738	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		24919738	26384828	135	67029										
DMC1	0	genome.wustl.edu	37	chr22	38933603	38933603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atattggggcttacgtcataGttgctcctggatcggcagtc	12	9	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	22	38933603	38933603	G	A	SNP	DMC1	ENST00000216024	human	ensembl	69_37n	-1	known	missense	c.830	p.T277I	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206	280	0	0	154	89	36.63	-	-	-	A	38933603	G	A	38933603	3	1	771	1	0	0	0	0	1	0	0	0	4615	1029	36	4	204	4	DMC1	22	38933603	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	14013865	38933603	12370963	136	67030										
FAM83F	0	genome.wustl.edu	37	chr22	40425538	40425538	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	aggtaaaacaagtcccagttCtgccaagcctagcaactgtg	9	11	1	0			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	22	40425538	40425538	C	A	SNP	FAM83F	ENST00000333407	human	ensembl	69_37n	1	known	missense	c.1472	p.S491Y	0.002	NULL	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477	404	0	0	139	84	37.67	-	-	-	A	40425538	C	A	40425538	3	1	771	1	0	0	0	0	1	0	0	0	5683	913	32	2	1490	2	FAM83F	22	40425538	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	1491935	40425538	10879028	137	67031										
MAGEB10	0	genome.wustl.edu	37	chrX	27839536	27839536	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tttagaagaggaggaagaatCtcccccctctgcctctgctt	9	12	3	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	27839536	27839536	C	T	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	missense	c.113	p.S38F	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	159	0	0	107	29	21.17	-	-	-	T	27839536	C	T	27839536	3	4	771	1	0	0	0	0	1	0	0	0	9244	913	32	2	115	2	MAGEB10	23	27839536	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09		27839536	127431024	138	67032										
MAGEB1	0	genome.wustl.edu	37	chrX	30269315	30269315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	gcctatgatggagaggagcaCttaatctatggggaaccccg	13	9	1	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	30269315	30269315	C	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.705	p.H235Q	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	309	1	0.32	269	71	20.88	-	-	-	A	30269315	C	A	30269315	3	1	771	1	0	0	0	0	1	0	0	0	9243	564	20	4	707	4	MAGEB1	23	30269315	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	2429779	30269315	125001245	139	67033										
DOCK11	0	genome.wustl.edu	37	chrX	117679991	117679991	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgttctatttcaggactcatCttctttatgttctcagaagg	7	8	6	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	117679991	117679991	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.470	p.S157F	0.890	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	591	0	0	451	173	27.68	-	-	-	T	117679991	C	T	117679991	3	4	771	1	0	0	0	0	1	0	0	0	4721	913	32	2	492	2	DOCK11	23	117679991	Missense_Mutation	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	87410676	117679991	37590569	140	67034										
ZNF75D	0	genome.wustl.edu	37	chrX	134427939	134427939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	tgcaagcgctctcaggaccaAgattctctatttttgtgctg	9	10	2	1			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	134427939	134427939	A	C	SNP	ZNF75D	ENST00000370766	human	ensembl	69_37n	-1	known	missense	c.128	p.L43R	0.007	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376	105	0	0	74	24	24.49	-	-	-	C	134427939	A	C	134427939	3	2	771	1	0	0	0	0	1	0	0	0	18228	72	3	5	1424	5	ZNF75D	23	134427939	Missense_Mutation	SNP	A	TCGA-E2-A159-01A-11D-A10Y-09	16747948	134427939	20842621	141	67035										
SAGE1	0	genome.wustl.edu	37	chrX	134995026	134995026	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	atagattcccactgccatctCagaaaagttaagcacatgag	7	10	1	3			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	134995026	134995026	C	G	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	silent	c.2685	p.L895	0.001	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	195	0	0	160	55	25.58	-	-	-	G	134995026	C	G	134995026	2	3	771	1	0	0	0	0	0	0	0	1	13895	813	29	2		2	SAGE1	23	134995026	Silent	SNP	C	TCGA-E2-A159-01A-11D-A10Y-09	567087	134995026	20275534	142	67036										
BRS3	0	genome.wustl.edu	37	chrX	135570328	135570328	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.528169014084507	75	3.08313038843544e-33	4.64005195126477	5.39571755475646	3.87064697316414	0.0569505848822896	0.402989063857274	59	ctttaatttcaatcacaaatGacacagaatcatcaagctct	3	10	5	2			TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb	deb6d361-2e35-4b88-8f3b-db1382e05f18	X	135570328	135570328	G	T	SNP	BRS3	ENST00000370648	human	ensembl	69_37n	1	known	missense	c.55	p.D19Y	1.000	prints_Bombesin_rcpt_3	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239	260	0	0	194	71	26.79	-	-	-	T	135570328	G	T	135570328	3	4	771	1	0	0	0	0	1	0	0	0	1530	1290	45	2	57	2	BRS3	23	135570328	Missense_Mutation	SNP	G	TCGA-E2-A159-01A-11D-A10Y-09	575302	135570328	19700232	143	67037										
EPHA2	0	genome.wustl.edu	37	chr1	16464453	16464453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ggtgtagttcatgtggggctCcaggtcgctcactgtcacac	13	11	3	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	1	16464453	16464453	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	missense	c.1207	p.E403K	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	37	0	0	32	5	13.51	-	-	-	T	16464453	C	T	16464453	3	4	772	1	0	0	0	0	1	0	0	0	5204	864	30	2	1775	2	EPHA2	1	16464453	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		16464453	232786168	1	67038										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220359016	220359016	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gactttttaaagtgtccattAaagtctgagtgatgtttcta	8	5	2	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	1	220359016	220359016	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.1847	p.L616S	0.560	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	499	0	0	423	93	17.99	-	-	-	G	220359016	A	G	220359016	3	3	772	1	0	0	0	0	1	0	0	0	13019	372	13	5	2406	5	RAB3GAP2	1	220359016	Missense_Mutation	SNP	A	TCGA-E2-A15A-01A-11D-A12B-09	203894563	220359016	28891605	2	67039										
SCN1A	0	genome.wustl.edu	37	chr2	166854657	166854657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	agtaaagatacatgtacagaCtttcttcatacttaggctgg	8	7	2	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	2	166854657	166854657	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4367	p.S1456N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	387	0	0	245	61	19.93	-	-	-	T	166854657	C	T	166854657	3	4	772	1	0	0	0	0	1	0	0	0	14002	565	20	4	1678	4	SCN1A	2	166854657	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		166854657	76344716	3	67040										
ZAK	0	genome.wustl.edu	37	chr2	174131293	174131293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gccccagggacctccaccaaCccaacaccataccagggatg	8	18	0	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	2	174131293	174131293	C	T	SNP	ZAK	ENST00000375213	human	ensembl	69_37n	1	known	missense	c.2218	p.P740S	0.695	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	92	0	0	61	8	11.59	-	-	-	T	174131293	C	T	174131293	3	4	772	1	0	0	0	0	1	0	0	0	17609	507	18	4	2677	4	ZAK	2	174131293	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	7276636	174131293	69068080	4	67041										
PDHB	0	genome.wustl.edu	37	chr3	58413894	58413894	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cagcaggagcatccaggaaaTtgaacgcaggacctaggaga	13	9	0	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	3	58413894	58413894	T	G	SNP	PDHB	ENST00000302746	human	ensembl	69_37n	-1	known	missense	c.947	p.N316T	1.000	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	PDHB	HGNC	ENSG00000168291	144	0	0	55	69	55.65	-	-	-	G	58413894	T	G	58413894	3	3	772	1	0	0	0	0	1	0	0	0	11739	1493	52	5	136	5	PDHB	3	58413894	Missense_Mutation	SNP	T	TCGA-E2-A15A-01A-11D-A12B-09		58413894	139608536	5	67042										
CDH10	0	genome.wustl.edu	37	chr5	24491905	24491906	+	Frame_Shift_Ins	INS	-	-	T													0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tttcatgtctattgaatccaINSttttttctggttaagattct							TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	5	24491905	24491906	-	T	INS	CDH10	ENST00000264463	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1656_1655	p.N552fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	258	0	0	226	40	15.04	-	-	-	T	24491906	-	T	24491905	7	5	772	1	0	1	1	0	0	0	0	0	3125	214	8	0	718	0	CDH10	5	24491905	Frame_Shift_Ins	INS	-	TCGA-E2-A15A-01A-11D-A12B-09		24491905	156423355	6	67043										
GPR98	0	genome.wustl.edu	37	chr5	90052933	90052933	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ccagacagtgctggcctggaAgactttaaaccatctcatgg	10	11	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	5	90052933	90052933	A	C	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.11895	p.E3965D	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	344	1	0.29	204	34	14.29	-	-	-	C	90052933	A	C	90052933	3	2	772	1	0	0	0	0	1	0	0	0	6772	69	3	5	12121	5	GPR98	5	90052933	Missense_Mutation	SNP	A	TCGA-E2-A15A-01A-11D-A12B-09	65561028	90052933	90862327	7	67044										
FBXL17	0	genome.wustl.edu	37	chr5	107216863	107216863	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ctctattgtcatgctgtatcGcccaatggctatcagtgctg	9	11	3	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	5	107216863	107216863	G	A	SNP	FBXL17	ENST00000542267	human	ensembl	69_37n	-1	known	nonsense	c.1840	p.R614*	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL17	HGNC	ENSG00000145743	292	1	0.34	145	57	28.22	-	-	-	A	107216863	G	A	107216863	4	1	772	1	0	0	0	0	0	1	0	0	5759	1095	38	1	273	1	FBXL17	5	107216863	Nonsense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	17163930	107216863	73698397	8	67045										
ODZ2	0	genome.wustl.edu	37	chr5	167626024	167626024	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tccccagctgtgacctcagtGgctttgtccggcctgatcca	10	15	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	5	167626024	167626024	G	C	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.3067	p.G1023R	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	218	0	0	100	85	45.95	-	-	-	C	167626024	G	C	167626024	3	2	772	1	0	0	0	0	1	0	0	0	10908	1348	47	4	3102	4	ODZ2	5	167626024	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	60409161	167626024	13289236	9	67046										
KIAA1191	0	genome.wustl.edu	37	chr5	175782743	175782743	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tcttgcctagaggcgcactaGcctcaagagctaagaacaga	10	11	2	4			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	5	175782743	175782743	G	C	SNP	KIAA1191	ENST00000298569	human	ensembl	69_37n	-1	known	missense	c.38	p.A13G	0.391	NULL	NULL	-	no_errors	KIAA1191	HGNC	ENSG00000122203	24	0	0	22	4	15.38	-	-	-	C	175782743	G	C	175782743	3	2	772	1	0	0	0	0	1	0	0	0	8264	971	34	4	903	4	KIAA1191	5	175782743	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	8156719	175782743	5132517	10	67047										
EXOC2	0	genome.wustl.edu	37	chr6	564578	564578	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tggcgtgagcgagccactgtCcggagagctcgcacttcacc	13	14	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	6	564578	564578	C	A	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	missense	c.1634	p.G545V	0.997	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	70	0	0	47	14	22.95	-	-	-	A	564578	C	A	564578	3	1	772	1	0	0	0	0	1	0	0	0	5338	855	30	2	1196	2	EXOC2	6	564578	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		564578	170550489	11	67048										
FAM184A	0	genome.wustl.edu	37	chr6	119345581	119345581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cagcttgcaagtcttccaatGccaatcgtttgtctttttca	6	11	3	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	6	119345581	119345581	G	T	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	missense	c.557	p.A186E	0.998	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	344	0	0	251	59	19.03	-	-	-	T	119345581	G	T	119345581	3	4	772	1	0	0	0	0	1	0	0	0	5552	1319	46	4	2933	4	FAM184A	6	119345581	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	118781003	119345581	51769486	12	67049										
PNPLA8	0	genome.wustl.edu	37	chr7	108155517	108155517	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gttttaaccagccactatccGatacttttcttaaaatttgg	5	9	1	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	7	108155517	108155517	G	C	SNP	PNPLA8	ENST00000257694	human	ensembl	69_37n	-1	known	missense	c.419	p.S140W	0.245	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241	234	0	0	169	26	13.27	-	-	-	C	108155517	G	C	108155517	3	2	772	1	0	0	0	0	1	0	0	0	12245	1059	37	3	1965	3	PNPLA8	7	108155517	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		108155517	50983146	13	67050										
PLEC	0	genome.wustl.edu	37	chr8	145004699	145004699	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tactcgttcagctgttccttCtcgtcctgtgggggaggggc	14	11	2	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	8	145004699	145004699	C	T	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.2721	p.E907	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	37	0	0	31	4	11.43	-	-	-	T	145004699	C	T	145004699	2	4	772	1	0	0	0	0	0	0	0	1	12126	912	32	2		2	PLEC	8	145004699	Silent	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		145004699	1359323	14	67051										
PTPRD	0	genome.wustl.edu	37	chr9	8500901	8500901	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cgaaggaattcccaaaatctCgtgaggcttgtcatcttccc	8	12	3	1			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	9	8500901	8500901	C	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	nonsense	c.1981	p.E661*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	586	0	0	321	55	14.51	-	-	-	A	8500901	C	A	8500901	4	1	772	1	0	0	0	0	0	1	0	0	12882	893	31	3	3917	3	PTPRD	9	8500901	Nonsense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		8500901	132712530	15	67052										
AGTPBP1	0	genome.wustl.edu	37	chr9	88211299	88211299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	atagtaacaaatgtcagtccCcatacgaatccaccatggtc	6	12	1	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	9	88211299	88211299	C	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.2437	p.G813W	1.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	339	1	0.29	181	30	14.22	-	-	-	A	88211299	C	A	88211299	3	1	772	1	0	0	0	0	1	0	0	0	400	623	22	4	1315	4	AGTPBP1	9	88211299	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	79710398	88211299	53002132	16	67053										
SCAI	0	genome.wustl.edu	37	chr9	127781175	127781175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gggctcctgtttcagcaaggCgattcgatgtgataacaatg	12	8	1	1			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	9	127781175	127781175	C	T	SNP	SCAI	ENST00000373549	human	ensembl	69_37n	-1	known	missense	c.833	p.R278H	1.000	pfam_DUF3550,pirsf_UCP013022	pfam_DUF3550,pirsf_UCP013022	-	no_errors	SCAI	HGNC	ENSG00000173611	328	0	0	128	30	18.99	-	-	-	T	127781175	C	T	127781175	3	4	772	1	0	0	0	0	1	0	0	0	13956	768	27	1	1096	1	SCAI	9	127781175	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	39569876	127781175	13432256	17	67054										
GTPBP4	0	genome.wustl.edu	37	chr10	1038429	1038429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tttattttctttaattgcagGacttcatagacctcacgttg	6	8	3	1			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	10	1038429	1038429	G	T	SNP	GTPBP4	ENST00000360803	human	ensembl	69_37n	1	known	missense	c.49	p.D17Y	1.000	NULL	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937	359	0	0	247	150	37.78	-	-	-	T	1038429	G	T	1038429	3	4	772	1	0	0	0	0	1	0	0	0	6933	1188	41	2	55	2	GTPBP4	10	1038429	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		1038429	134496318	18	67055										
SRGN	0	genome.wustl.edu	37	chr10	70863653	70863653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gagaatccaggacttgaatcGtatcttcccactttctgagg	9	10	2	3			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	10	70863653	70863653	G	A	SNP	SRGN	ENST00000242465	human	ensembl	69_37n	1	known	missense	c.254	p.R85H	0.005	pfam_Serglycin	pfam_Serglycin	-	no_errors	SRGN	HGNC	ENSG00000122862	235	0	0	141	27	16.07	-	-	-	A	70863653	G	A	70863653	3	1	772	1	0	0	0	0	1	0	0	0	15239	1145	40	1	264	1	SRGN	10	70863653	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	69825224	70863653	64671094	19	67056										
SORCS1	0	genome.wustl.edu	37	chr10	108380241	108380241	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	gggtgcccacttggctgggcCacagcactgccgtcgcattg	14	14	0	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	10	108380241	108380241	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	nonsense	c.2741	p.W914*	1.000	superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	88	0	0	61	16	20.78	-	-	-	T	108380241	C	T	108380241	4	4	772	1	0	0	0	0	0	1	0	0	15019	595	21	4	1027	4	SORCS1	10	108380241	Nonsense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	37516588	108380241	27154506	20	67057										
TACC2	0	genome.wustl.edu	37	chr10	123845245	123845245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cacacccacccaggatgcccCagagacagaggcatgtgatg	11	14	0	3			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	10	123845245	123845245	C	T	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.3230	p.P1077L	0.693	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	63	0	0	55	8	12.7	-	-	-	T	123845245	C	T	123845245	3	4	772	1	0	0	0	0	1	0	0	0	15594	594	21	4	3240	4	TACC2	10	123845245	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	15465004	123845245	11689502	21	67058										
ZNF214	0	genome.wustl.edu	37	chr11	7021109	7021109	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	atatttataagtttcctcttCtatgattattgtgaagatgt	6	4	2	3			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	7021109	7021109	C	A	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	missense	c.1805	p.R602I	0.460	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	244	1	0.41	209	26	11.06	-	-	-	A	7021109	C	A	7021109	3	1	772	1	0	0	0	0	1	0	0	0	17866	913	32	2	19	2	ZNF214	11	7021109	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		7021109	127985407	22	67059										
TUB	0	genome.wustl.edu	37	chr11	8122413	8122413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	acgctggcagaataagaacaCggagagtatcatcgagctgc	12	9	1	3			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	8122413	8122413	C	T	SNP	TUB	ENST00000305253	human	ensembl	69_37n	1	known	missense	c.1421	p.T474M	1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	165	0	0	177	24	11.94	-	-	-	T	8122413	C	T	8122413	3	4	772	1	0	0	0	0	1	0	0	0	16839	536	19	1	1509	1	TUB	11	8122413	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	1101304	8122413	126884103	23	67060										
F2	0	genome.wustl.edu	37	chr11	46741275	46741275	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tcctggctcctcagcaagcaCggtcgctgctccagcgggtc	12	16	1	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	46741275	46741275	C	G	SNP	F2	ENST00000311907	human	ensembl	69_37n	1	known	missense	c.103	p.R35G	0.000	smart_GLA_domain,pirsf_Peptidase_S1A_prothrombin	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	36	0	0	37	6	13.64	-	-	-	G	46741275	C	G	46741275	3	3	772	1	0	0	0	0	1	0	0	0	5379	527	19	3	109	3	F2	11	46741275	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	38618862	46741275	88265241	24	67061										
TTC9C	0	genome.wustl.edu	37	chr11	62502958	62502958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ccaaggccttgtatcgggccGgagtggcctttttccatctg	12	12	1	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	62502958	62502958	G	A	SNP	TTC9C	ENST00000316461	human	ensembl	69_37n	1	known	missense	c.343	p.G115R	1.000	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9C	HGNC	ENSG00000162222	97	0	0	74	13	14.94	-	-	-	A	62502958	G	A	62502958	3	1	772	1	0	0	0	0	1	0	0	0	16814	1117	39	1	349	1	TTC9C	11	62502958	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	15761683	62502958	72503558	25	67062										
ATL3	0	genome.wustl.edu	37	chr11	63398771	63398771	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	taccattgtgcttgcagaagTtctcatataattccttgatt	6	8	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	63398771	63398771	T	G	SNP	ATL3	ENST00000332645	human	ensembl	69_37n	-1	known	missense	c.1361	p.N454T	0.337	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	ATL3	HGNC	ENSG00000184743	224	1	0.44	189	23	10.8	-	-	-	G	63398771	T	G	63398771	3	3	772	1	0	0	0	0	1	0	0	0	1112	1725	60	5	353	5	ATL3	11	63398771	Missense_Mutation	SNP	T	TCGA-E2-A15A-01A-11D-A12B-09	895813	63398771	71607745	26	67063										
NPAS4	0	genome.wustl.edu	37	chr11	66192244	66192244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cttccactactctgaaaaggAgcagaatgagatagaccgtc	9	10	1	4			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	66192244	66192244	A	G	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	missense	c.1883	p.E628G	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	37	0	0	45	44	49.44	-	-	-	G	66192244	A	G	66192244	3	3	772	1	0	0	0	0	1	0	0	0	10637	304	11	5	1909	5	NPAS4	11	66192244	Missense_Mutation	SNP	A	TCGA-E2-A15A-01A-11D-A12B-09	2793473	66192244	68814272	27	67064										
REXO2	0	genome.wustl.edu	37	chr11	114318554	114318554	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tctgctgtgtatagacgctgGtatccagaagaatatgaatt	10	6	1	4			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	11	114318554	114318554	G	C	SNP	REXO2	ENST00000265881	human	ensembl	69_37n	1	known	missense	c.537	p.W179C	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO2	HGNC	ENSG00000076043	500	0	0	284	89	23.8	-	-	-	C	114318554	G	C	114318554	3	2	772	1	0	0	0	0	1	0	0	0	13325	1270	44	4	559	4	REXO2	11	114318554	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	48126310	114318554	20687962	28	67065										
SYT10	0	genome.wustl.edu	37	chr12	33538115	33538115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tgtgtacatacctgatgagcCagtaatatccatcgccttca	7	11	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	12	33538115	33538115	C	T	SNP	SYT10	ENST00000228567	human	ensembl	69_37n	-1	known	missense	c.1189	p.G397S	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975	318	0	0	266	49	15.56	-	-	-	T	33538115	C	T	33538115	3	4	772	1	0	0	0	0	1	0	0	0	15558	594	21	4	398	4	SYT10	12	33538115	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		33538115	100313780	29	67066										
ZNF10	0	genome.wustl.edu	37	chr12	133733175	133733175	+	Frame_Shift_Del	DEL	T	T	-													0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ttttagtcgaagctctcaccTttattcacatcaaagaaccc							TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	12	133733175	133733175	T	-	DEL	ZNF10	ENST00000248211	human	ensembl	69_37n	1	known	frame_shift_del	c.1343	p.Y449fs	0.989	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223	238	0	0	138	83	37.56	-	-	-	-	133733175	T	-	133733175	7	5	772	1	0	1	0	1	0	0	0	0	17808	1609	56	0	1357	0	ZNF10	12	133733175	Frame_Shift_Del	DEL	T	TCGA-E2-A15A-01A-11D-A12B-09	100195060	133733175	118720	30	67067										
DPEP1	0	genome.wustl.edu	37	chr16	89702958	89702958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	caggcattcggcaggccttcCgggaagggaaggtggccagc	17	11	0	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	16	89702958	89702958	C	T	SNP	DPEP1	ENST00000261615	human	ensembl	69_37n	1	known	missense	c.388	p.R130W	0.746	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP1	HGNC	ENSG00000015413	48	0	0	17	21	55.26	-	-	-	T	89702958	C	T	89702958	3	4	772	1	0	0	0	0	1	0	0	0	4748	643	23	1	402	1	DPEP1	16	89702958	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09		89702958	651795	31	67068										
MGAT5B	0	genome.wustl.edu	37	chr17	74902269	74902269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ctccctgaaggagctgcagaGgtgagtgctggggaaagcca	16	9	0	3			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	17	74902269	74902269	G	A	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	missense	c.1058	p.S353N	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	51	0	0	52	11	17.46	-	-	-	A	74902269	G	A	74902269	3	1	772	1	0	0	0	0	1	0	0	0	9620	1014	35	4	1156	4	MGAT5B	17	74902269	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		74902269	6292941	32	67069										
WIZ	0	genome.wustl.edu	37	chr19	15559079	15559079	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	tctctctgggccttggggacGatctggtgcagccaggctgc	15	12	3	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	19	15559079	15559079	G	C	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.40	p.R14G	0.658	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	18	0	0	4	11	73.33	-	-	-	C	15559079	G	C	15559079	3	2	772	1	0	0	0	0	1	0	0	0	17472	1058	37	3	2372	3	WIZ	19	15559079	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		15559079	43569904	33	67070										
CCDC155	0	genome.wustl.edu	37	chr19	49920669	49920669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cagctcctgtcctgggcctgCtgctgctgctgctgctctct	11	16	1	0			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	19	49920669	49920669	C	A	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.1591	p.L531M	0.999	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	181	1	0.55	165	34	17	-	-	-	A	49920669	C	A	49920669	3	1	772	1	0	0	0	0	1	0	0	0	2814	796	28	4	1665	4	CCDC155	19	49920669	Missense_Mutation	SNP	C	TCGA-E2-A15A-01A-11D-A12B-09	34361590	49920669	9208314	34	67071										
ADAMTS1	0	genome.wustl.edu	37	chr21	28214903	28214903	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	cgtgagaaggtaatgctttaGaccactgccgtggaattctg	12	8	1	2			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	21	28214903	28214903	G	A	SNP	ADAMTS1	ENST00000284984	human	ensembl	69_37n	-1	known	silent	c.832	p.L278	0.988	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	76	0	0	44	16	26.67	-	-	-	A	28214903	G	A	28214903	2	1	772	1	0	0	0	0	0	0	0	1	255	933	33	2		2	ADAMTS1	21	28214903	Silent	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		28214903	19914992	35	67072										
DOPEY2	0	genome.wustl.edu	37	chr21	37618234	37618234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ggagctgctcacctacctctGcctgagcttcctgcgctcct	9	17	2	1			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	21	37618234	37618234	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	1	known	missense	c.3956	p.C1319Y	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	55	0	0	59	19	24.36	-	-	-	A	37618234	G	A	37618234	3	1	772	1	0	0	0	0	1	0	0	0	4743	1319	46	4	4026	4	DOPEY2	21	37618234	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09	9403331	37618234	10511661	36	67073										
WNK3	0	genome.wustl.edu	37	chrX	54224848	54224848	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0810810810810811	3	0.891988885883765	0.995069475571493	0	1.34627046694967	0.142857142857143	0.62934362934363	0	ctggctggaatggtcccccaGattgggcgggaattactaca	13	10	0	1			TCGA-E2-A15A-01A-11D-A12B-09	TCGA-E2-A15A-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7e3eff1-65d5-491f-a726-35dc6752b370	e33c2754-8dec-4bab-b626-1886a5756536	X	54224848	54224848	G	A	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.5312	p.S1771F	0.693	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	304	0	0	229	76	24.84	-	-	-	A	54224848	G	A	54224848	3	1	772	1	0	0	0	0	1	0	0	0	17476	942	33	2	94	2	WNK3	23	54224848	Missense_Mutation	SNP	G	TCGA-E2-A15A-01A-11D-A12B-09		54224848	101045712	37	67074										
PGBD2	0	genome.wustl.edu	37	chr1	249210807	249210807	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	tcctgtcataacagagatgtCattgctgggagaggtatcca	11	8	2	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	1	249210807	249210807	C	G	SNP	PGBD2	ENST00000329291	human	ensembl	69_37n	1	known	silent	c.24	p.V8	0.000	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220	189	0	0	123	76	38.19	-	-	-	G	249210807	C	G	249210807	2	3	773	1	0	0	0	0	0	0	0	1	11855	813	29	2		2	PGBD2	1	249210807	Silent	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09		249210807	39814	1	67075										
DYSF	0	genome.wustl.edu	37	chr2	71894557	71894557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cccagtggaggagcgtctggCtctgcatgtgcttcagcagc	14	12	3	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	2	71894557	71894557	C	T	SNP	DYSF	ENST00000413539	human	ensembl	69_37n	1	known	missense	c.5345	p.A1782V	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	34	0	0	44	5	10.2	-	-	-	T	71894557	C	T	71894557	3	4	773	1	0	0	0	0	1	0	0	0	4894	797	28	4	5697	4	DYSF	2	71894557	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09		71894557	171304816	2	67076										
TTC21B	0	genome.wustl.edu	37	chr2	166788288	166788289	+	Frame_Shift_Ins	INS	-	-	A													0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gttctgctgaaggcgagtgtINSaatgttatagaaaagttgag							TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	2	166788288	166788289	-	A	INS	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	frame_shift_ins	c.874_873	p.T291fs	1.000:0.998	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	620	0	0	374	196	34.39	-	-	-	A	166788289	-	A	166788288	7	5	773	1	0	1	1	0	0	0	0	0	16785	1638	57	0	3164	0	TTC21B	2	166788288	Frame_Shift_Ins	INS	-	TCGA-E2-A15C-01A-31D-A12B-09	94893731	166788288	76411085	3	67077										
CREB1	0	genome.wustl.edu	37	chr2	208442363	208442363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cagcacgaaagagagaggtcCgtctaatgaagaacaggtac	12	8	1	4			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	2	208442363	208442363	C	T	SNP	CREB1	ENST00000432329	human	ensembl	69_37n	1	known	missense	c.865	p.R289C	1.000	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_Coactivator_CBP_pKID,pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB1	HGNC	ENSG00000118260	307	0	0	182	98	35	-	-	-	T	208442363	C	T	208442363	3	4	773	1	0	0	0	0	1	0	0	0	3884	652	23	1	891	1	CREB1	2	208442363	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	41654075	208442363	34757010	4	67078										
KLF15	0	genome.wustl.edu	37	chr3	126062602	126062602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gcgcacggagcggctgctccGcgggaagcggtgcaccttga	17	13	0	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	3	126062602	126062602	G	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.1219	p.R407W	0.964	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	47	0	0	27	15	35.71	-	-	-	A	126062602	G	A	126062602	3	1	773	1	0	0	0	0	1	0	0	0	8396	1086	38	1	35	1	KLF15	3	126062602	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		126062602	71959828	5	67079										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	233	0	0	164	120	42.25	-	-	-	G	178952085	A	G	178952085	3	3	773	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A15C-01A-31D-A12B-09	52889483	178952085	19070345	6	67080										
MMRN1	0	genome.wustl.edu	37	chr4	90833166	90833166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	ctcattggattggaggtgctGtcctggatacagtgggccga	15	8	1	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	4	90833166	90833166	G	T	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	missense	c.815	p.C272F	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	289	0	0	163	81	33.06	-	-	-	T	90833166	G	T	90833166	3	4	773	1	0	0	0	0	1	0	0	0	9742	1377	48	4	825	4	MMRN1	4	90833166	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		90833166	100321110	7	67081										
MAP3K1	0	genome.wustl.edu	37	chr5	56161239	56161240	+	Frame_Shift_Ins	INS	-	-	CT													0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	ccgggtgtttcaactagaacINScttcagacccaatgttatgg							TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	5	56161239	56161240	-	CT	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1108_1109	p.S371fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	178	0	0	146	70	32.41	-	-	-	CT	56161240	-	CT	56161239	7	5	773	1	0	1	1	0	0	0	0	0	9314	507	18	0	1126	0	MAP3K1	5	56161239	Frame_Shift_Ins	INS	-	TCGA-E2-A15C-01A-31D-A12B-09		56161239	124754021	8	67082										
PCDHB10	0	genome.wustl.edu	37	chr5	140573470	140573470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	ccgacgtcaatgacaacgccCccgccttcacccaaacctcc	5	21	2	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	5	140573470	140573470	C	T	SNP	PCDHB10	ENST00000239446	human	ensembl	69_37n	1	known	missense	c.1345	p.P449S	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	142	0	0	118	37	23.87	-	-	-	T	140573470	C	T	140573470	3	4	773	1	0	0	0	0	1	0	0	0	11608	623	22	4	1347	4	PCDHB10	5	140573470	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	84412231	140573470	40341790	9	67083										
MTO1	0	genome.wustl.edu	37	chr6	74190485	74190485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	tcaacgactcttctttgctgGacagatcaatggcaccactg	8	12	4	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	6	74190485	74190485	G	A	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.1217	p.G406E	1.000	pfam_GIDA-rel,tigrfam_GidA	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	389	0	0	349	63	15.29	-	-	-	A	74190485	G	A	74190485	3	1	773	1	0	0	0	0	1	0	0	0	10025	1174	41	2	1322	2	MTO1	6	74190485	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		74190485	96924582	10	67084										
AMPH	0	genome.wustl.edu	37	chr7	38431426	38431426	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gtcagcagcccccatggctgGtgcagaaggcgtgggctgag	17	11	1	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	7	38431426	38431426	G	T	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	missense	c.1801	p.P601T	0.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	76	0	0	42	18	30	-	-	-	T	38431426	G	T	38431426	3	4	773	1	0	0	0	0	1	0	0	0	588	1261	44	4	298	4	AMPH	7	38431426	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		38431426	120707237	11	67085										
POM121L12	0	genome.wustl.edu	37	chr7	53103484	53103484	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	agcaggtcacccagcacgccCcagaccacgccatctcccca	7	21	2	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	7	53103484	53103484	C	G	SNP	POM121L12	ENST00000408890	human	ensembl	69_37n	1	known	silent	c.120	p.P40	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900	19	0	0	10	8	44.44	-	-	-	G	53103484	C	G	53103484	2	3	773	1	0	0	0	0	0	0	0	1	12315	610	22	4		4	POM121L12	7	53103484	Silent	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	14672058	53103484	106035179	12	67086										
PTPRD	0	genome.wustl.edu	37	chr9	8341168	8341168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gctgcaggcatacccttgtgGattcatatggcataatatta	9	8	1	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	9	8341168	8341168	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.5048	p.S1683F	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	451	0	0	294	104	26.13	-	-	-	A	8341168	G	A	8341168	3	1	773	1	0	0	0	0	1	0	0	0	12882	1174	41	2	714	2	PTPRD	9	8341168	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		8341168	132872263	13	67087										
CRAT	0	genome.wustl.edu	37	chr9	131860626	131860626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	aaatggtggaacaccatcacGgtgatatccaggtcctggat	11	9	1	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	9	131860626	131860626	G	A	SNP	CRAT	ENST00000455396	human	ensembl	69_37n	-1	novel	missense	c.25	p.R9C	0.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRAT	HGNC	ENSG00000095321	139	0	0	117	13	10	-	-	-	A	131860626	G	A	131860626	3	1	773	1	0	0	0	0	1	0	0	0	3877	1103	39	1	670	1	CRAT	9	131860626	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09	123519458	131860626	9352805	14	67088										
OR5P2	0	genome.wustl.edu	37	chr11	7817592	7817592	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	aagtatttttctaacaagctCtctcttcagagcccccttaa	4	12	4	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	11	7817592	7817592	C	T	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	missense	c.898	p.E300K	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	262	0	0	189	72	27.59	-	-	-	T	7817592	C	T	7817592	3	4	773	1	0	0	0	0	1	0	0	0	11251	922	32	2	74	2	OR5P2	11	7817592	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09		7817592	127188924	15	67089										
SLC22A20	0	genome.wustl.edu	37	chr11	64981401	64981401	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gcagcatgggccgcttccagCtcaaccacacagccctgctg	10	17	1	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	11	64981401	64981401	C	T	SNP	SLC22A20	ENST00000525264	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.946	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847	28	0	0	24	16	40	-	-	-	T	64981401	C	T	64981401	1	4	773	0	1	0	0	0	0	0	0	0	14541	797	28	4		4	SLC22A20	11	64981401	RNA	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	57163809	64981401	70025115	16	67090										
GAL3ST3	0	genome.wustl.edu	37	chr11	65810935	65810935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gtggccgggtgcacgaagtgCgccgagaagttgcgggggta	20	8	0	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	11	65810935	65810935	C	T	SNP	GAL3ST3	ENST00000312006	human	ensembl	69_37n	-1	known	silent	c.339	p.A113	0.993	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229	23	0	0	15	7	31.82	-	-	-	T	65810935	C	T	65810935	2	4	773	1	0	0	0	0	0	0	0	1	6249	755	27	1		1	GAL3ST3	11	65810935	Silent	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	829534	65810935	69195581	17	67091										
RPS6KB2	0	genome.wustl.edu	37	chr11	67200919	67200919	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cccgggaccttgtcaaaaagGtgcagctcccttctctcttc	8	15	3	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	11	67200919	67200919	G	T	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	splice_site	c.906+1	e10+1	1.000	-	-	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	83	0	0	58	32	35.56	-	-	-	T	67200919	G	T	67200919	5	4	773	1	0	0	0	0	0	0	1	0	13743	1275	44	4	945	4	RPS6KB2	11	67200919	Splice_Site	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09	1389984	67200919	67805597	18	67092										
DDX23	0	genome.wustl.edu	37	chr12	49228171	49228171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	accaatgacagccacagtgcGgatacctagcggtttcccaa	9	13	0	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	12	49228171	49228171	G	A	SNP	DDX23	ENST00000308025	human	ensembl	69_37n	-1	known	missense	c.1492	p.R498C	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	371	0	0	275	130	32.1	-	-	-	A	49228171	G	A	49228171	3	1	773	1	0	0	0	0	1	0	0	0	4381	1116	39	1	994	1	DDX23	12	49228171	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		49228171	84623724	19	67093										
MEGF11	0	genome.wustl.edu	37	chr15	66257398	66257398	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gaacactgccccccattgtgGcagtcacagtgctgtgagca	11	13	1	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	15	66257398	66257398	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	69_37n	-1	known	silent	c.960	p.C320	1.000	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	56	0	0	35	20	36.36	-	-	-	A	66257398	G	A	66257398	2	1	773	1	0	0	0	0	0	0	0	1	9532	1195	42	4		4	MEGF11	15	66257398	Silent	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		66257398	36273994	20	67094										
PLIN1	0	genome.wustl.edu	37	chr15	90213364	90213364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cccccaggcaagctcgcaccCggccaaagcggcccccagga	11	20	0	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	15	90213364	90213364	C	T	SNP	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	missense	c.445	p.G149R	0.789	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	85	0	0	59	25	29.76	-	-	-	T	90213364	C	T	90213364	3	4	773	1	0	0	0	0	1	0	0	0	12163	652	23	1	1143	1	PLIN1	15	90213364	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	23955966	90213364	12318028	21	67095										
FBXO31	0	genome.wustl.edu	37	chr16	87367507	87367507	+	Frame_Shift_Del	DEL	C	C	-													0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cttaccacatcctgcaggttCgggggtagtcctcattcctg							TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	16	87367507	87367507	C	-	DEL	FBXO31	ENST00000311635	human	ensembl	69_37n	-1	known	frame_shift_del	c.1382	p.R461fs	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO31	HGNC	ENSG00000103264	30	0	0	15	5	22.73	-	-	-	-	87367507	C	-	87367507	7	5	773	1	0	1	0	1	0	0	0	0	5787	884	31	0	245	0	FBXO31	16	87367507	Frame_Shift_Del	DEL	C	TCGA-E2-A15C-01A-31D-A12B-09		87367507	2987246	22	67096										
MBD3	0	genome.wustl.edu	37	chr19	1585064	1585064	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	caccactcaccttgacctggTtggaggagtcgtagcgcacg	12	13	1	1			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	19	1585064	1585064	T	C	SNP	MBD3	ENST00000156825	human	ensembl	69_37n	-1	known	missense	c.260	p.N87S	0.023	superfamily_DNA-bd_integrase-typ	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655	136	0	0	88	37	29.6	-	-	-	C	1585064	T	C	1585064	3	2	773	1	0	0	0	0	1	0	0	0	9415	1725	60	5	635	5	MBD3	19	1585064	Missense_Mutation	SNP	T	TCGA-E2-A15C-01A-31D-A12B-09		1585064	57543919	23	67097										
SMARCA4	0	genome.wustl.edu	37	chr19	11129678	11129678	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	tttgacaagtgggccccctcCgtggtgaaggtgtcttacaa	12	10	1	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	19	11129678	11129678	C	G	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	silent	c.2484	p.S828	0.243	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	315	0	0	229	115	33.43	-	-	-	G	11129678	C	G	11129678	2	3	773	1	0	0	0	0	0	0	0	1	14859	639	23	3		3	SMARCA4	19	11129678	Silent	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	9544614	11129678	47999305	24	67098										
ZC3H4	0	genome.wustl.edu	37	chr19	47570929	47570929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gcgggtgagtctggggtcccGgctgaggcgagggtcagcca	20	10	2	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	19	47570929	47570929	G	A	SNP	ZC3H4	ENST00000253048	human	ensembl	69_37n	-1	known	missense	c.2596	p.R866W	0.999	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749	8	0	0	14	5	26.32	-	-	-	A	47570929	G	A	47570929	3	1	773	1	0	0	0	0	1	0	0	0	17666	1115	39	1	1319	1	ZC3H4	19	47570929	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09	36441251	47570929	11558054	25	67099										
ZNRF3	0	genome.wustl.edu	37	chr22	29445672	29445672	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	ccggcccgtgcctttcctccGagcggcagtggcagcctgct	13	17	0	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	22	29445672	29445672	G	A	SNP	ZNRF3	ENST00000544604	human	ensembl	69_37n	1	known	silent	c.1503	p.P501	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579	35	0	0	4	9	69.23	-	-	-	A	29445672	G	A	29445672	2	1	773	1	0	0	0	0	0	0	0	1	18306	1045	37	1		1	ZNRF3	22	29445672	Silent	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		29445672	21858894	26	67100										
PHKA2	0	genome.wustl.edu	37	chrX	18944633	18944633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	cttgaattggatgaatgtccGcgatactctggacgttcacc	10	10	2	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	X	18944633	18944633	G	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1397	p.A466V	0.997	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	365	0	0	183	127	40.84	-	-	-	A	18944633	G	A	18944633	3	1	773	1	0	0	0	0	1	0	0	0	11918	1087	38	1	2390	1	PHKA2	23	18944633	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09		18944633	136325927	27	67101										
GPR174	0	genome.wustl.edu	37	chrX	78426998	78426998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	tgatgatacctctggcaataGgaccaaatgctttgtggatc	10	8	1	2			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	X	78426998	78426998	G	T	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	1	known	missense	c.494	p.R165M	0.010	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	439	1	0.23	290	152	34.31	-	-	-	T	78426998	G	T	78426998	3	4	773	1	0	0	0	0	1	0	0	0	6722	1000	35	4	496	4	GPR174	23	78426998	Missense_Mutation	SNP	G	TCGA-E2-A15C-01A-31D-A12B-09	59482365	78426998	76843562	28	67102										
HCFC1	0	genome.wustl.edu	37	chrX	153222202	153222202	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.888418951607289	1.03258145363409	3.26984126984127	0.613095238095238	1	1	0	gcctggctgtcccggggcccCcttaagcaccacctggaaca	11	17	0	0			TCGA-E2-A15C-01A-31D-A12B-09	TCGA-E2-A15C-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10c594a1-0843-4740-9d96-00211a9509fb	3ec15582-48e3-4bb5-bdfe-7c909a259130	X	153222202	153222202	C	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.2509	p.G837W	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	88	0	0	49	17	25.37	-	-	-	A	153222202	C	A	153222202	3	1	773	1	0	0	0	0	1	0	0	0	7042	623	22	4	3646	4	HCFC1	23	153222202	Missense_Mutation	SNP	C	TCGA-E2-A15C-01A-31D-A12B-09	74795204	153222202	2048358	29	67103										
MMACHC	0	genome.wustl.edu	37	chr1	45974590	45974590	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	aaacctcatgactgtgtaccTacaagagctgaccgtatcgc	8	12	1	3			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	1	45974590	45974590	T	A	SNP	MMACHC	ENST00000401061	human	ensembl	69_37n	1	known	silent	c.552	p.P184	0.017	NULL	NULL	-	no_errors	MMACHC	HGNC	ENSG00000132763	190	0	0	128	38	22.89	-	-	-	A	45974590	T	A	45974590	2	1	774	1	0	0	0	0	0	0	0	1	9712	1509	53	5		5	MMACHC	1	45974590	Silent	SNP	T	TCGA-E2-A15D-01A-11D-A10Y-09		45974590	203276031	1	67104										
WLS	0	genome.wustl.edu	37	chr1	68624888	68624888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	actcagcaaacgcgtcatcaCggtaagccagggaaacgtcc	10	13	3	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	1	68624888	68624888	C	T	SNP	WLS	ENST00000540432	human	ensembl	69_37n	-1	known	missense	c.422	p.R141H	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729	229	1	0.43	89	30	25.21	-	-	-	T	68624888	C	T	68624888	3	4	774	1	0	0	0	0	1	0	0	0	17473	536	19	1	1369	1	WLS	1	68624888	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	22650298	68624888	180625733	2	67105										
USP34	0	genome.wustl.edu	37	chr2	61622023	61622023	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	aataaacgcatgtgctataaGaaatggcaaagtttcaggag	10	5	1	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	2	61622023	61622023	G	T	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.718	p.L240I	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	273	0	0	93	26	21.85	-	-	-	T	61622023	G	T	61622023	3	4	774	1	0	0	0	0	1	0	0	0	17162	942	33	2	10226	2	USP34	2	61622023	Missense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09		61622023	181577350	3	67106										
REG1A	0	genome.wustl.edu	37	chr2	79350038	79350038	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	ggcattggagccccaagcagTgttaatcctggctactgtgt	12	10	0	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	2	79350038	79350038	T	C	SNP	REG1A	ENST00000233735	human	ensembl	69_37n	1	known	silent	c.393	p.S131	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386	223	0	0	93	35	27.34	-	-	-	C	79350038	T	C	79350038	2	2	774	1	0	0	0	0	0	0	0	1	13293	1693	59	5		5	REG1A	2	79350038	Silent	SNP	T	TCGA-E2-A15D-01A-11D-A10Y-09	17728015	79350038	163849335	4	67107										
FHIT	0	genome.wustl.edu	37	chr3	60522632	60522632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	cctattcacaagagcgaaggAcagttctgttttgagaaaca	9	8	2	2			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	3	60522632	60522632	A	G	SNP	FHIT	ENST00000341848	human	ensembl	69_37n	-1	known	missense	c.64	p.S22P	1.000	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_Histidine_triad_HIT	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_Histidine_triad_HIT	-	no_errors	FHIT	HGNC	ENSG00000189283	206	0	0	77	34	30.63	-	-	-	G	60522632	A	G	60522632	3	3	774	1	0	0	0	0	1	0	0	0	5923	275	10	5	399	5	FHIT	3	60522632	Missense_Mutation	SNP	A	TCGA-E2-A15D-01A-11D-A10Y-09		60522632	137499798	5	67108										
FRAS1	0	genome.wustl.edu	37	chr4	79432509	79432509	+	Frame_Shift_Del	DEL	A	A	-													0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	acaaggtgggccatgtggggAcccccttaaggagcaacatt							TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	4	79432509	79432509	A	-	DEL	FRAS1	ENST00000264895	human	ensembl	69_37n	1	known	frame_shift_del	c.9862	p.T3288fs	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EGF-like,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	249	0	0	140	46	24.08	-	-	-	-	79432509	A	-	79432509	7	5	774	1	0	1	0	1	0	0	0	0	6090	275	10	0	10191	0	FRAS1	4	79432509	Frame_Shift_Del	DEL	A	TCGA-E2-A15D-01A-11D-A10Y-09		79432509	111721767	6	67109										
CUL9	0	genome.wustl.edu	37	chr6	43153245	43153245	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	ccagcaagatggcatcgagcAgcacatggattttgacagtc	11	10	0	2			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	6	43153245	43153245	A	C	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.647	p.Q216P	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	209	0	0	108	42	28	-	-	-	C	43153245	A	C	43153245	3	2	774	1	0	0	0	0	1	0	0	0	4092	188	7	5	653	5	CUL9	6	43153245	Missense_Mutation	SNP	A	TCGA-E2-A15D-01A-11D-A10Y-09		43153245	127961822	7	67110										
PRDM1	0	genome.wustl.edu	37	chr6	106547367	106547367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	aacttcttgtgtggtattgtCgggactttgcagaaaggctt	12	6	1	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	6	106547367	106547367	C	T	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.604	p.R202W	1.000	smart_SET_dom,pirsf_Znf_PRDM1,pfscan_SET_dom	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	234	0	0	100	50	33.33	-	-	-	T	106547367	C	T	106547367	3	4	774	1	0	0	0	0	1	0	0	0	12531	875	31	1	631	1	PRDM1	6	106547367	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	63394122	106547367	64567700	8	67111										
RMND1	0	genome.wustl.edu	37	chr6	151766672	151766672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	tcatggttggaaggtgtgccTtttcatcttggcaacgagca	12	8	3	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	6	151766672	151766672	T	C	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	missense	c.275	p.K92R	0.000	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	452	1	0.22	172	62	26.5	-	-	-	C	151766672	T	C	151766672	3	2	774	1	0	0	0	0	1	0	0	0	13482	1609	56	5	1118	5	RMND1	6	151766672	Missense_Mutation	SNP	T	TCGA-E2-A15D-01A-11D-A10Y-09	45219305	151766672	19348395	9	67112										
DLL1	0	genome.wustl.edu	37	chr6	170592575	170592575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	gactgagatgtccttctcacGctggcagttggccaggttgt	13	10	1	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	6	170592575	170592575	G	T	SNP	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	missense	c.1792	p.R598S	1.000	NULL	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	221	0	0	137	27	16.46	-	-	-	T	170592575	G	T	170592575	3	4	774	1	0	0	0	0	1	0	0	0	4602	1087	38	3	391	3	DLL1	6	170592575	Missense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09	18825903	170592575	522492	10	67113										
EIF3B	0	genome.wustl.edu	37	chr7	2418800	2418800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	gagaaggcgcaccatgatggAagatttccggaagtaccgga	14	8	0	3			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	7	2418800	2418800	A	G	SNP	EIF3B	ENST00000360876	human	ensembl	69_37n	1	known	missense	c.2264	p.E755G	1.000	pirsf_eIF3b	pfam_TIF2A_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3b,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263	106	0	0	78	22	22	-	-	-	G	2418800	A	G	2418800	3	3	774	1	0	0	0	0	1	0	0	0	5048	246	9	5	2330	5	EIF3B	7	2418800	Missense_Mutation	SNP	A	TCGA-E2-A15D-01A-11D-A10Y-09		2418800	156719863	11	67114										
MUC17	0	genome.wustl.edu	37	chr7	100677246	100677246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	cagttcatctcctacacctgCtgaaggtaccagcatgccaa	7	14	2	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	7	100677246	100677246	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.2549	p.A850V	0.006	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	559	0	0	389	51	11.59	-	-	-	T	100677246	C	T	100677246	3	4	774	1	0	0	0	0	1	0	0	0	10046	797	28	4	2559	4	MUC17	7	100677246	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	98258446	100677246	58461417	12	67115										
TRPS1	0	genome.wustl.edu	37	chr8	116426295	116426295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	ttccacttgtgcattgttccTatgcaggcccctctggatat	8	12	1	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	8	116426295	116426295	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	69_37n	-1	known	missense	c.3841	p.R1281G	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	380	0	0	218	62	22.14	-	-	-	C	116426295	T	C	116426295	3	2	774	1	0	0	0	0	1	0	0	0	16689	1521	53	5	47	5	TRPS1	8	116426295	Missense_Mutation	SNP	T	TCGA-E2-A15D-01A-11D-A10Y-09		116426295	29937727	13	67116										
ZCCHC7	0	genome.wustl.edu	37	chr9	37354798	37354798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	tgaaattcaggagagagaaaAgagactaaaacaaaaaataa	8	3	1	4			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	9	37354798	37354798	A	G	SNP	ZCCHC7	ENST00000336755	human	ensembl	69_37n	1	known	missense	c.1175	p.K392R	0.221	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905	180	0	0	68	31	31.31	-	-	-	G	37354798	A	G	37354798	3	3	774	1	0	0	0	0	1	0	0	0	17689	72	3	5	1201	5	ZCCHC7	9	37354798	Missense_Mutation	SNP	A	TCGA-E2-A15D-01A-11D-A10Y-09		37354798	103858633	14	67117										
PAEP	0	genome.wustl.edu	37	chr9	138454702	138454702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	gttgagaagaaggtccttggAgagaagactgagaatccaaa	13	5	0	5			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	9	138454702	138454702	A	G	SNP	PAEP	ENST00000433563	human	ensembl	69_37n	1	known	missense	c.163	p.R55G	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Blactoglobulin	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Blactoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PAEP	HGNC	ENSG00000122133	192	0	0	98	44	30.77	-	-	-	G	138454702	A	G	138454702	3	3	774	1	0	0	0	0	1	0	0	0	11455	291	11	5	283	5	PAEP	9	138454702	Missense_Mutation	SNP	A	TCGA-E2-A15D-01A-11D-A10Y-09	101099904	138454702	2758729	15	67118										
GATA3	0	genome.wustl.edu	37	chr10	8115701	8115701	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	aaaaaattgatctttgtttaGattaacagacccctgactat	5	7	1	4			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	10	8115701	8115701	G	C	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site	c.1051-1	e5-1	1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	69	0	0	24	10	29.41	-	-	-	C	8115701	G	C	8115701	5	2	774	1	0	0	0	0	0	0	1	0	6305	956	33	2	1068	2	GATA3	10	8115701	Splice_Site	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09		8115701	127419046	16	67119										
CD69	0	genome.wustl.edu	37	chr12	9907274	9907274	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	ttcctctctacctgcgtatcGttttagaaagttcttaaaga	6	9	2	2			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	12	9907274	9907274	G	A	SNP	CD69	ENST00000228434	human	ensembl	69_37n	-1	known	nonsense	c.400	p.R134*	0.007	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD69	HGNC	ENSG00000110848	406	0	0	173	20	10.36	-	-	-	A	9907274	G	A	9907274	4	1	774	1	0	0	0	0	0	1	0	0	3060	1153	40	1	207	1	CD69	12	9907274	Nonsense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09		9907274	123944621	17	67120										
SP7	0	genome.wustl.edu	37	chr12	53722021	53722021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	aaggtcggggcgtctgactgGcctcctcttcccccgtgctg	13	15	2	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	12	53722021	53722021	G	A	SNP	SP7	ENST00000303846	human	ensembl	69_37n	-1	known	missense	c.1205	p.A402V	0.980	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374	45	0	0	26	7	21.21	-	-	-	A	53722021	G	A	53722021	3	1	774	1	0	0	0	0	1	0	0	0	15058	1203	42	4	94	4	SP7	12	53722021	Missense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09	43814747	53722021	80129874	18	67121										
MED13L	0	genome.wustl.edu	37	chr12	116429370	116429370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	tgcaggcacagatgcaacagCtgtcaaagtttctgtcttta	9	9	3	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	12	116429370	116429370	C	T	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.3389	p.S1130N	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	161	0	0	56	20	26.32	-	-	-	T	116429370	C	T	116429370	3	4	774	1	0	0	0	0	1	0	0	0	9502	797	28	4	3303	4	MED13L	12	116429370	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	62707349	116429370	17422525	19	67122										
GSX1	0	genome.wustl.edu	37	chr13	28367816	28367816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	atatgtacctgtcccgcctaCgtcgcatcgagatcgcgacc	9	15	0	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	13	28367816	28367816	C	T	SNP	GSX1	ENST00000302945	human	ensembl	69_37n	1	known	missense	c.526	p.R176C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840	69	0	0	72	8	10	-	-	-	T	28367816	C	T	28367816	3	4	774	1	0	0	0	0	1	0	0	0	6900	536	19	1	532	1	GSX1	13	28367816	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09		28367816	86802062	20	67123										
MYCBP2	0	genome.wustl.edu	37	chr13	77636761	77636761	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	tgttgtccatcctttcccatCcatctccccgaggagagacg	8	15	1	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	13	77636761	77636761	C	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.12744	p.W4248C	1.000	NULL	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	518	0	0	188	65	25.69	-	-	-	A	77636761	C	A	77636761	3	1	774	1	0	0	0	0	1	0	0	0	10090	856	30	2	1332	2	MYCBP2	13	77636761	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	49268945	77636761	37533117	21	67124										
MAP1A	0	genome.wustl.edu	37	chr15	43814971	43814971	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	ggaaagagctcaagaaggatGaaggaaggaaggaggagaag	18	2	1	4			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	15	43814971	43814971	G	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	nonsense	c.1300	p.E434*	0.993	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	137	0	0	77	15	16.13	-	-	-	T	43814971	G	T	43814971	4	4	774	1	0	0	0	0	0	1	0	0	9298	1291	45	2	1302	2	MAP1A	15	43814971	Nonsense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09		43814971	58716421	22	67125										
CNOT1	0	genome.wustl.edu	37	chr16	58585042	58585042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	gacagcatgctcaccttttgTgtcatatttgactgtgagag	10	8	2	2			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	16	58585042	58585042	T	C	SNP	CNOT1	ENST00000567285	human	ensembl	69_37n	-1	putative	missense	c.313	p.T105A	0.986	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNOT1	HGNC	ENSG00000125107	233	0	0	31	4	11.43	-	-	-	C	58585042	T	C	58585042	3	2	774	1	0	0	0	0	1	0	0	0	3647	1683	59	5	4120	5	CNOT1	16	58585042	Missense_Mutation	SNP	T	TCGA-E2-A15D-01A-11D-A10Y-09		58585042	31769711	23	67126										
WWP2	0	genome.wustl.edu	37	chr16	69969793	69969793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	gttcatcgacacgggcttcaCcctccctttctacaagcgga	8	15	3	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	16	69969793	69969793	C	T	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.1880	p.T627I	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	186	0	0	65	28	30.11	-	-	-	T	69969793	C	T	69969793	3	4	774	1	0	0	0	0	1	0	0	0	17513	507	18	4	1950	4	WWP2	16	69969793	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09	11384751	69969793	20384960	24	67127										
QRICH2	0	genome.wustl.edu	37	chr17	74274115	74274115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	actgggcgtgcagcagctcgCggattatctggctgctggcc	15	12	1	0			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	17	74274115	74274115	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	missense	c.4574	p.R1525H	0.986	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	77	0	0	57	9	13.64	-	-	-	T	74274115	C	T	74274115	3	4	774	1	0	0	0	0	1	0	0	0	12963	768	27	1	437	1	QRICH2	17	74274115	Missense_Mutation	SNP	C	TCGA-E2-A15D-01A-11D-A10Y-09		74274115	6921095	25	67128										
APEX2	0	genome.wustl.edu	37	chrX	55028014	55028014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.621419676214197	6.83561643835616	0	1	1	0	agcccctggctatcgttgagGgttataactcctatttcagc	9	11	1	1			TCGA-E2-A15D-01A-11D-A10Y-09	TCGA-E2-A15D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	891295d6-4dd0-4ab4-bbce-13da7f3c30d0	41e1ad36-7a9b-4046-b493-742e462fde54	X	55028014	55028014	G	A	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	1	known	missense	c.193	p.G65S	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	119	0	0	57	19	25	-	-	-	A	55028014	G	A	55028014	3	1	774	1	0	0	0	0	1	0	0	0	771	1232	43	4	199	4	APEX2	23	55028014	Missense_Mutation	SNP	G	TCGA-E2-A15D-01A-11D-A10Y-09		55028014	100242546	26	67129										
PRKCZ	0	genome.wustl.edu	37	chr1	2103803	2103803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	ccccgaattacatcgcccccGaaatcctgcggggagaggag	12	14	0	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	2103803	2103803	G	A	SNP	PRKCZ	ENST00000378567	human	ensembl	69_37n	1	known	missense	c.1261	p.E421K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606	81	0	0	54	8	12.9	-	-	-	A	2103803	G	A	2103803	3	1	775	1	0	0	0	0	1	0	0	0	12598	1059	37	1	1311	1	PRKCZ	1	2103803	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09		2103803	247146818	1	67130										
PLCH2	0	genome.wustl.edu	37	chr1	2430566	2430566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	accctggttttcatggtgcaCatgccggagatcgcgctggt	13	11	1	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	2430566	2430566	C	T	SNP	PLCH2	ENST00000419816	human	ensembl	69_37n	1	known	missense	c.362	p.T121I	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PLipase_C_Pinositol-sp_Y,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_Pinositol-sp_Y	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCH2	HGNC	ENSG00000149527	96	0	0	54	18	24.66	-	-	-	T	2430566	C	T	2430566	3	4	775	1	0	0	0	0	1	0	0	0	12112	477	17	4	2552	4	PLCH2	1	2430566	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09	326763	2430566	246820055	2	67131										
GPR61	0	genome.wustl.edu	37	chr1	110086562	110086562	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	tggttgccctacttctctttCcacctctatgttgccctgag	7	14	2	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	110086562	110086562	C	T	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	1	known	silent	c.918	p.F306	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	207	0	0	136	26	16.05	-	-	-	T	110086562	C	T	110086562	2	4	775	1	0	0	0	0	0	0	0	1	6752	854	30	2		2	GPR61	1	110086562	Silent	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09	107655996	110086562	139164059	3	67132										
TSEN15	0	genome.wustl.edu	37	chr1	184023924	184023924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	tccagctcatctgccttgttGgtactgagatagaaggggag	13	8	2	2			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	184023924	184023924	G	T	SNP	TSEN15	ENST00000361641	human	ensembl	69_37n	1	known	missense	c.280	p.G94C	0.911	pfam_tRNA-endonuc_su_Sen15	pfam_tRNA-endonuc_su_Sen15	-	no_errors	TSEN15	HGNC	ENSG00000198860	302	1	0.33	290	42	12.61	-	-	-	T	184023924	G	T	184023924	3	4	775	1	0	0	0	0	1	0	0	0	16707	1348	47	4	290	4	TSEN15	1	184023924	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09	73937362	184023924	65226697	4	67133										
CHI3L1	0	genome.wustl.edu	37	chr1	203152855	203152855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	atcaaagccatgggtgcgcaGaaatggcggtactgacttga	13	8	1	3			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	203152855	203152855	G	C	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.379	p.L127V	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	287	0	0	206	37	15.23	-	-	-	C	203152855	G	C	203152855	3	2	775	1	0	0	0	0	1	0	0	0	3369	933	33	2	796	2	CHI3L1	1	203152855	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09	19128931	203152855	46097766	5	67134										
ACTN2	0	genome.wustl.edu	37	chr1	236883433	236883433	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gatggcaacgtgaaaatgacCctgggtatgatctggaccat	12	8	1	3			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	236883433	236883433	C	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	1	known	silent	c.390	p.T130	0.981	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	479	0	0	478	56	10.49	-	-	-	A	236883433	C	A	236883433	2	1	775	1	0	0	0	0	0	0	0	1	205	610	22	4		4	ACTN2	1	236883433	Silent	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09	33730578	236883433	12367188	6	67135										
LHFPL4	0	genome.wustl.edu	37	chr3	9594129	9594129	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gctgaagtcggtgaaggagcCccggcaggtgagctcgcggc	18	11	0	3			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	3	9594129	9594129	C	G	SNP	LHFPL4	ENST00000287585	human	ensembl	69_37n	-1	known	missense	c.235	p.G79R	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959	51	0	0	26	12	31.58	-	-	-	G	9594129	C	G	9594129	3	3	775	1	0	0	0	0	1	0	0	0	8822	623	22	4	520	4	LHFPL4	3	9594129	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09		9594129	188428301	7	67136										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	213	0	0	169	179	51.44	-	-	-	G	178952085	A	G	178952085	3	3	775	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A15E-01A-11D-A12B-09	169357956	178952085	19070345	8	67137										
PCDHA1	0	genome.wustl.edu	37	chr5	140167773	140167773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gtacacgggcgagatcagcaCgactcgtgtcctggacgagg	15	11	1	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	5	140167773	140167773	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.1898	p.T633M	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	82	0	0	73	10	12.05	-	-	-	T	140167773	C	T	140167773	3	4	775	1	0	0	0	0	1	0	0	0	11592	536	19	1	1900	1	PCDHA1	5	140167773	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09		140167773	40747487	9	67138										
PCDHGB2	0	genome.wustl.edu	37	chr5	140741005	140741005	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gcaagccgcccctctcctccAgcataattgtcaccctgcac	6	19	2	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	5	140741005	140741005	A	G	SNP	PCDHGB2	ENST00000522605	human	ensembl	69_37n	1	known	missense	c.1303	p.S435G	0.806	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910	103	0	0	74	29	28.16	-	-	-	G	140741005	A	G	140741005	3	3	775	1	0	0	0	0	1	0	0	0	11636	188	7	5	1305	5	PCDHGB2	5	140741005	Missense_Mutation	SNP	A	TCGA-E2-A15E-01A-11D-A12B-09	573232	140741005	40174255	10	67139										
DSP	0	genome.wustl.edu	37	chr6	7570674	7570674	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	cctttgtgcctcttaggattGagcagtactacgaagccatc	9	11	1	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	6	7570674	7570674	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.1579	p.E527K	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	186	0	0	220	42	16.03	-	-	-	A	7570674	G	A	7570674	3	1	775	1	0	0	0	0	1	0	0	0	4816	1291	45	2	1629	2	DSP	6	7570674	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09		7570674	163544393	11	67140										
TEX15	0	genome.wustl.edu	37	chr8	30695338	30695338	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	cagcactgaagttcacatttCttttcttcatgctatttaaa	4	9	4	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	8	30695338	30695338	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7313	p.R2438T	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	345	0	0	538	238	30.63	-	-	-	G	30695338	C	G	30695338	3	3	775	1	0	0	0	0	1	0	0	0	15874	913	32	2	1064	2	TEX15	8	30695338	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09		30695338	115668684	12	67141			1	111		3	3	175	N	T_C	1.061595e-08
TEX15	0	genome.wustl.edu	37	chr8	30695359	30695359	+	Frame_Shift_Del	DEL	T	T	-													0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	ttttcttcatgctatttaaaTtttcctgttgtccactgaag							TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	8	30695359	30695359	T	-	DEL	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	frame_shift_del	c.7292	p.N2431fs	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	390	0	0	622	255	28.62	-	-	-	-	30695359	T	-	30695359	7	5	775	1	0	1	0	1	0	0	0	0	15874	1493	52	0	1085	0	TEX15	8	30695359	Frame_Shift_Del	DEL	T	TCGA-E2-A15E-01A-11D-A12B-09	21	30695359	115668663	13	67142			1	111		3	3	175	N	T_C	1.061595e-08
TEX15	0	genome.wustl.edu	37	chr8	30695512	30695512	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	tttttggcgttaaatgatttCttttcagactgtcacatgaa	7	6	3	3			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	8	30695512	30695512	C	A	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7139	p.R2380I	0.061	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	394	0	0	662	281	29.8	-	-	-	A	30695512	C	A	30695512	3	1	775	1	0	0	0	0	1	0	0	0	15874	913	32	2	1238	2	TEX15	8	30695512	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09	153	30695512	115668510	14	67143			1	111		3	3	175	N	T_C	1.061595e-08
EED	0	genome.wustl.edu	37	chr11	85961453	85961453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gggaaaatggaagtcaaagaAatgcaaatattctttcaaat	8	4	3	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	11	85961453	85961453	A	G	SNP	EED	ENST00000263360	human	ensembl	69_37n	1	known	missense	c.230	p.K77R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	214	0	0	201	37	15.55	-	-	-	G	85961453	A	G	85961453	3	3	775	1	0	0	0	0	1	0	0	0	4957	14	1	5	236	5	EED	11	85961453	Missense_Mutation	SNP	A	TCGA-E2-A15E-01A-11D-A12B-09		85961453	49045063	15	67144										
ETS1	0	genome.wustl.edu	37	chr11	128443000	128443000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	agtaagggacggggctgctcCcagcagaatccacaaagtag	13	10	0	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	11	128443000	128443000	C	T	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	missense	c.26	p.G9E	0.000	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	141	0	0	87	26	23.01	-	-	-	T	128443000	C	T	128443000	3	4	775	1	0	0	0	0	1	0	0	0	5312	623	22	4	1553	4	ETS1	11	128443000	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09	42481547	128443000	6563516	16	67145										
TMEM117	0	genome.wustl.edu	37	chr12	44238679	44238679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gtgcttctatggctacttgcCattctcacaggactaatagc	8	11	2	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	12	44238679	44238679	C	T	SNP	TMEM117	ENST00000536799	human	ensembl	69_37n	1	known	missense	c.13	p.H5Y	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	191	0	0	153	42	21.54	-	-	-	T	44238679	C	T	44238679	3	4	775	1	0	0	0	0	1	0	0	0	16126	581	21	4	227	4	TMEM117	12	44238679	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09		44238679	89613216	17	67146										
MGA	0	genome.wustl.edu	37	chr15	42032290	42032290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	tggctgcatccaggaaaccaCgtaccctgttgccttcaaca	8	14	1	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	15	42032290	42032290	C	T	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.4474	p.R1492C	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	249	0	0	192	28	12.73	-	-	-	T	42032290	C	T	42032290	3	4	775	1	0	0	0	0	1	0	0	0	9611	536	19	1	4524	1	MGA	15	42032290	Missense_Mutation	SNP	C	TCGA-E2-A15E-01A-11D-A12B-09		42032290	60499102	18	67147										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	300	0	0	151	67	30.45	-	-	-	C	7578271	T	C	7578271	3	2	775	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-E2-A15E-01A-11D-A12B-09		7578271	73616939	19	67148										
DHRS7C	0	genome.wustl.edu	37	chr17	9680524	9680524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	acttacaagtcgtacggaacGggattccaaacttcccttgg	9	11	0	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	9680524	9680524	G	A	SNP	DHRS7C	ENST00000330255	human	ensembl	69_37n	-1	known	missense	c.560	p.P187L	0.999	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544	412	0	0	278	53	15.96	-	-	-	A	9680524	G	A	9680524	3	1	775	1	0	0	0	0	1	0	0	0	4533	1116	39	1	390	1	DHRS7C	17	9680524	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09	2102253	9680524	71514686	20	67149										
MYH4	0	genome.wustl.edu	37	chr17	10346782	10346782	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	gcaatgtcagcccgttccttGgcctcctccagctcgtgctg	10	16	1	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	10346782	10346782	G	T	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.5730	p.A1910	0.086	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	477	0	0	327	75	18.66	-	-	-	T	10346782	G	T	10346782	2	4	775	1	0	0	0	0	0	0	0	1	10109	1335	47	4		4	MYH4	17	10346782	Silent	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09	666258	10346782	70848428	21	67150										
EFTUD2	0	genome.wustl.edu	37	chr17	42929146	42929146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	tggctgtggctccaaggggcGgatgacaatgctcttgtcca	14	10	1	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	42929146	42929146	G	A	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2755	p.R919C	0.999	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	110	0	0	56	59	50.86	-	-	-	A	42929146	G	A	42929146	3	1	775	1	0	0	0	0	1	0	0	0	4996	1116	39	1	171	1	EFTUD2	17	42929146	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09	32582364	42929146	38266064	22	67151										
NR1H2	0	genome.wustl.edu	37	chr19	50885244	50885244	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	cctgcaggtggagttcatcaAccccatcttcgagttctcgc	9	14	4	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	19	50885244	50885244	A	T	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	1	known	missense	c.1049	p.N350I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	35	0	0	31	7	18.42	-	-	-	T	50885244	A	T	50885244	3	4	775	1	0	0	0	0	1	0	0	0	10690	43	2	5	1075	5	NR1H2	19	50885244	Missense_Mutation	SNP	A	TCGA-E2-A15E-01A-11D-A12B-09		50885244	8243739	23	67152										
DYRK1A	0	genome.wustl.edu	37	chr21	38884440	38884440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	ccggaccaggccaagggtctAcaattctccaacgaatagct	9	13	2	0			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	21	38884440	38884440	A	G	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	1	known	missense	c.1898	p.Y633C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	261	0	0	163	79	32.64	-	-	-	G	38884440	A	G	38884440	3	3	775	1	0	0	0	0	1	0	0	0	4889	391	14	5	2024	5	DYRK1A	21	38884440	Missense_Mutation	SNP	A	TCGA-E2-A15E-01A-11D-A12B-09		38884440	9245455	24	67153										
KCNJ6	0	genome.wustl.edu	37	chr21	39086565	39086565	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	cacaatttccagttcctcttTgggcagctgggctttggaga	11	10	1	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	21	39086565	39086565	T	C	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	missense	c.895	p.K299E	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	204	0	0	124	38	23.46	-	-	-	C	39086565	T	C	39086565	3	2	775	1	0	0	0	0	1	0	0	0	8109	1821	63	5	384	5	KCNJ6	21	39086565	Missense_Mutation	SNP	T	TCGA-E2-A15E-01A-11D-A12B-09	202125	39086565	9043330	25	67154										
SHROOM2	0	genome.wustl.edu	37	chrX	9905362	9905362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.574462996841437	1.6827731092437	5.23529411764706	0.713903743315508	1	1	0	atctgagcagttctactcgcGcttctgtctgtacacgcggc	10	13	4	1			TCGA-E2-A15E-01A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6f107df-1186-4d6d-b5b5-2393e9369dd1	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	X	9905362	9905362	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	1	known	missense	c.3776	p.R1259H	1.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	75	0	0	39	8	16.67	-	-	-	A	9905362	G	A	9905362	3	1	775	1	0	0	0	0	1	0	0	0	14383	1087	38	1	3802	1	SHROOM2	23	9905362	Missense_Mutation	SNP	G	TCGA-E2-A15E-01A-11D-A12B-09		9905362	145365198	26	67155										
TYW3	0	genome.wustl.edu	37	chr1	75202299	75202299	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	acacaaactttgtgtaaaagAtgatgtggtaagttttaaaa	8	3	0	2			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	75202299	75202299	A	T	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	1	known	missense	c.248	p.D83V	1.000	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	136	0	0	87	22	20.18	-	-	-	T	75202299	A	T	75202299	3	4	776	1	0	0	0	0	1	0	0	0	16917	333	12	5	254	5	TYW3	1	75202299	Missense_Mutation	SNP	A	TCGA-E2-A15F-01A-11D-A10Y-09		75202299	174048322	1	67156										
ANKRD34A	0	genome.wustl.edu	37	chr1	145473655	145473655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gacccctcagtccgagatcaCgcgggcgcctcggctcttgt	12	16	3	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	145473655	145473655	C	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	1	known	silent	c.327	p.H109	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	12	0	0	18	17	48.57	-	-	-	T	145473655	C	T	145473655	2	4	776	1	0	0	0	0	0	0	0	1	661	535	19	1		1	ANKRD34A	1	145473655	Silent	SNP	C	TCGA-E2-A15F-01A-11D-A10Y-09	70271356	145473655	103776966	2	67157										
SH3BP5L	0	genome.wustl.edu	37	chr1	249107351	249107351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	ctcgaagccgctcttcctccGcctcattcacctggcccaga	7	19	3	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	249107351	249107351	G	A	SNP	SH3BP5L	ENST00000366472	human	ensembl	69_37n	-1	known	missense	c.548	p.A183V	1.000	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137	60	0	0	81	11	11.96	-	-	-	A	249107351	G	A	249107351	3	1	776	1	0	0	0	0	1	0	0	0	14336	1087	38	1	641	1	SH3BP5L	1	249107351	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	103633696	249107351	143270	3	67158										
WDR6	0	genome.wustl.edu	37	chr3	49050454	49050454	+	Missense_Mutation	SNP	G	G	A													0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	caagcagagatggcacacatGcagtgccttcctacccccag							TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49050454	49050454	G	A	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.1577	p.C526Y	0.999	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	82	0	0	83	36	30.25	-	-	-	A	49050454	G	A	49050454	3	1	776	1	0	0	0	0	1	0	0	0	17407	1319	46	4	1583	4	WDR6	3	49050454	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		49050454	148971976	4	67159	484	2								
WDR6	0	genome.wustl.edu	37	chr3	49050455	49050455	+	Silent	SNP	C	C	T													0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	aagcagagatggcacacatgCagtgccttcctacccccagg							TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49050455	49050455	C	T	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	silent	c.1578	p.C526	0.858	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	82	0	0	84	35	29.41	-	-	-	T	49050455	C	T	49050455	2	4	776	1	0	0	0	0	0	0	0	1	17407	718	25	4		4	WDR6	3	49050455	Silent	SNP	C	TCGA-E2-A15F-01A-11D-A10Y-09	1	49050455	148971975	5	67160	484	2								
AMT	0	genome.wustl.edu	37	chr3	49455277	49455277	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tggtaccctccatgttcaggAtgggactgtgtgcccgcatg	13	11	1	0			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49455277	49455277	A	T	SNP	AMT	ENST00000273588	human	ensembl	69_37n	-1	known	missense	c.1007	p.I336N	1.000	pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	pfam_GCV_T_N,pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	-	no_errors	AMT	HGNC	ENSG00000145020	37	0	0	35	19	35.19	-	-	-	T	49455277	A	T	49455277	3	4	776	1	0	0	0	0	1	0	0	0	589	333	12	5	240	5	AMT	3	49455277	Missense_Mutation	SNP	A	TCGA-E2-A15F-01A-11D-A10Y-09	404822	49455277	148567153	6	67161										
MORC1	0	genome.wustl.edu	37	chr3	108819313	108819313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gaacttcaaggttgacagccGttttttggatcgtccaaagt	10	8	1	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	108819313	108819313	G	A	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.265	p.R89W	0.974	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	316	0	0	311	109	25.95	-	-	-	A	108819313	G	A	108819313	3	1	776	1	0	0	0	0	1	0	0	0	9773	1144	40	1	2785	1	MORC1	3	108819313	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	59364036	108819313	89203117	7	67162										
PARP15	0	genome.wustl.edu	37	chr3	122296675	122296675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	ccgtggggcgcggaaggcctCccggcgctcttcctcccgga	15	17	1	0			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	122296675	122296675	C	T	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.161	p.S54F	0.002	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	59	0	0	21	15	41.67	-	-	-	T	122296675	C	T	122296675	3	4	776	1	0	0	0	0	1	0	0	0	11532	855	30	2	163	2	PARP15	3	122296675	Missense_Mutation	SNP	C	TCGA-E2-A15F-01A-11D-A10Y-09	13477362	122296675	75725755	8	67163										
ANKHD1	0	genome.wustl.edu	37	chr5	139862242	139862243	+	Frame_Shift_Ins	INS	-	-	A													0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tgtgcactgtgcagtttcttINSattagcaaaggtaaagaaag							TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	5	139862242	139862243	-	A	INS	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	frame_shift_ins	c.1860_1861	p.I620fs	0.993:1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	326	0	0	272	104	27.66	-	-	-	A	139862243	-	A	139862242	7	5	776	1	0	1	1	0	0	0	0	0	628	1741	61	0	2008	0	ANKHD1	5	139862242	Frame_Shift_Ins	INS	-	TCGA-E2-A15F-01A-11D-A10Y-09		139862242	41053018	9	67164										
HOXA1	0	genome.wustl.edu	37	chr7	27134229	27134229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tttcttttgcttcattcggcGgttctggaaccagatcttca	8	10	5	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	7	27134229	27134229	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	69_37n	-1	known	missense	c.838	p.R280C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA1	HGNC	ENSG00000105991	150	0	0	172	71	29.22	-	-	-	A	27134229	G	A	27134229	3	1	776	1	0	0	0	0	1	0	0	0	7339	1116	39	1	173	1	HOXA1	7	27134229	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		27134229	132004434	10	67165										
KCNU1	0	genome.wustl.edu	37	chr8	36662741	36662741	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gaagctgttcatcatatgaaGacaaaaccattcctattgat	6	8	2	3			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	8	36662741	36662741	G	C	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.406	p.D136H	0.936	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	417	0	0	462	650	58.4	-	-	-	C	36662741	G	C	36662741	3	2	776	1	0	0	0	0	1	0	0	0	8147	942	33	2	420	2	KCNU1	8	36662741	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		36662741	109701281	11	67166										
KIAA1279	0	genome.wustl.edu	37	chr10	70748750	70748750	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gcgctgctcggccctgcgccTgaggacgaggatgagcggcc	17	14	0	2			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	10	70748750	70748750	T	C	SNP	KIAA1279	ENST00000361983	human	ensembl	69_37n	1	known	silent	c.162	p.P54	0.000	NULL	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	35	0	0	24	11	31.43	-	-	-	C	70748750	T	C	70748750	2	2	776	1	0	0	0	0	0	0	0	1	8273	1567	55	5		5	KIAA1279	10	70748750	Silent	SNP	T	TCGA-E2-A15F-01A-11D-A10Y-09		70748750	64785997	12	67167										
PNLIP	0	genome.wustl.edu	37	chr10	118313248	118313248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	ctttccgacagtcggcgttcGgttactcaccttccaatgtg	9	13	1	0			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	10	118313248	118313248	G	A	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	missense	c.469	p.G157S	0.002	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	107	0	0	105	32	23.36	-	-	-	A	118313248	G	A	118313248	3	1	776	1	0	0	0	0	1	0	0	0	12223	1116	39	1	487	1	PNLIP	10	118313248	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	47564498	118313248	17221499	13	67168										
UEVLD	0	genome.wustl.edu	37	chr11	18568489	18568489	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gtcccagagctgggacaaggGctctgaacatatccacattg	11	11	1	2			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	18568489	18568489	G	C	SNP	UEVLD	ENST00000396197	human	ensembl	69_37n	-1	known	missense	c.824	p.A275G	0.965	pfam_Lactate/malate_DH_N	pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH	-	no_errors	UEVLD	HGNC	ENSG00000151116	207	0	0	181	83	31.44	-	-	-	C	18568489	G	C	18568489	3	2	776	1	0	0	0	0	1	0	0	0	17030	1203	42	4	611	4	UEVLD	11	18568489	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		18568489	116438027	14	67169										
MUC15	0	genome.wustl.edu	37	chr11	26584710	26584710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gccgatgggaaaatgaatccGttttcctttttccacacaac	7	11	0	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	26584710	26584710	G	A	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	missense	c.878	p.T293M	0.048	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	163	0	0	131	53	28.8	-	-	-	A	26584710	G	A	26584710	3	1	776	1	0	0	0	0	1	0	0	0	10044	1145	40	1	215	1	MUC15	11	26584710	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	8016221	26584710	108421806	15	67170										
RAG2	0	genome.wustl.edu	37	chr11	36615502	36615502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tgtgcaagtggctgggtagcGaagaggagggaggtagcagg	21	4	0	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	36615502	36615502	G	A	SNP	RAG2	ENST00000311485	human	ensembl	69_37n	-1	known	missense	c.217	p.R73C	1.000	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_Znf_FYVE_PHD	-	no_errors	RAG2	HGNC	ENSG00000175097	338	0	0	357	101	22	-	-	-	A	36615502	G	A	36615502	3	1	776	1	0	0	0	0	1	0	0	0	13088	1058	37	1	1370	1	RAG2	11	36615502	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	10030792	36615502	98391014	16	67171										
STRN3	0	genome.wustl.edu	37	chr14	31388247	31388247	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	ctgattaatgattcctgaagGgatgtggggcagctcatcat	12	7	2	3			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	14	31388247	31388247	G	C	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389A	1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	304	0	0	143	122	46.04	-	-	-	C	31388247	G	C	31388247	3	2	776	1	0	0	0	0	1	0	0	0	15421	1232	43	4	1268	4	STRN3	14	31388247	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		31388247	75961293	17	67172										
PDXDC1	0	genome.wustl.edu	37	chr16	15128373	15128373	+	Frame_Shift_Del	DEL	G	G	-													0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	aattggttttctccggtccaGgctttacagaagggaagaac							TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	16	15128373	15128373	G	-	DEL	PDXDC1	ENST00000396410	human	ensembl	69_37n	1	known	frame_shift_del	c.1965	p.A656fs	0.823	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	244	0	0	247	89	26.18	-	-	-	-	15128373	G	-	15128373	7	5	776	1	0	1	0	1	0	0	0	0	11769	991	35	0	2047	0	PDXDC1	16	15128373	Frame_Shift_Del	DEL	G	TCGA-E2-A15F-01A-11D-A10Y-09		15128373	75226380	18	67173										
SLC47A2	0	genome.wustl.edu	37	chr17	19607404	19607404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tatgctgagcacgcccgagaCggccgagcgcttggcctgca	14	14	0	2			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	17	19607404	19607404	C	T	SNP	SLC47A2	ENST00000325411	human	ensembl	69_37n	-1	known	missense	c.1105	p.V369I	0.000	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638	28	0	0	33	20	37.74	-	-	-	T	19607404	C	T	19607404	3	4	776	1	0	0	0	0	1	0	0	0	14737	536	19	1	731	1	SLC47A2	17	19607404	Missense_Mutation	SNP	C	TCGA-E2-A15F-01A-11D-A10Y-09		19607404	61587806	19	67174										
PBX4	0	genome.wustl.edu	37	chr19	19681029	19681029	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	tggcgccgaccatgcgctcaAtctccttaggggagacaggc	13	13	2	1			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	19	19681029	19681029	A	G	SNP	PBX4	ENST00000251203	human	ensembl	69_37n	-1	known	missense	c.521	p.I174T	0.990	pfam_PBX	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX4	HGNC	ENSG00000105717	63	0	0	88	25	21.93	-	-	-	G	19681029	A	G	19681029	3	3	776	1	0	0	0	0	1	0	0	0	11568	101	4	5	623	5	PBX4	19	19681029	Missense_Mutation	SNP	A	TCGA-E2-A15F-01A-11D-A10Y-09		19681029	39447954	20	67175										
CBR1	0	genome.wustl.edu	37	chr21	37445117	37445117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	cctgtgtacttggcccttttGcccccagatgctgagggtcc	11	14	0	2			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	21	37445117	37445117	G	T	SNP	CBR1	ENST00000290349	human	ensembl	69_37n	1	known	missense	c.771	p.L257F	0.992	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR1	HGNC	ENSG00000159228	55	0	0	47	19	28.79	-	-	-	T	37445117	G	T	37445117	3	4	776	1	0	0	0	0	1	0	0	0	2733	1310	46	4	781	4	CBR1	21	37445117	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09		37445117	10684778	21	67176										
SLC19A1	0	genome.wustl.edu	37	chr21	46951971	46951971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.987094234114834	0.711111111111111	3.08148148148148	0	1	1	0	gcccctgcagcagcagcaccGgcgtgtagcgcaggtagtcg	15	14	0	0			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	21	46951971	46951971	G	A	SNP	SLC19A1	ENST00000311124	human	ensembl	69_37n	-1	known	missense	c.281	p.P94L	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	20	0	0	16	5	23.81	-	-	-	A	46951971	G	A	46951971	3	1	776	1	0	0	0	0	1	0	0	0	14517	1116	39	1	1510	1	SLC19A1	21	46951971	Missense_Mutation	SNP	G	TCGA-E2-A15F-01A-11D-A10Y-09	9506854	46951971	1177924	22	67177										
SLC5A9	0	genome.wustl.edu	37	chr1	48703432	48703432	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	aacagtgggcagctcttcgaCtacatccaggctgtcaccag	10	13	2	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	48703432	48703432	C	A	SNP	SLC5A9	ENST00000236495	human	ensembl	69_37n	1	known	missense	c.1449	p.D483E	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834	228	0	0	244	60	19.74	-	-	-	A	48703432	C	A	48703432	3	1	777	1	0	0	0	0	1	0	0	0	14761	564	20	4	1495	4	SLC5A9	1	48703432	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		48703432	200547189	1	67178										
DNAJB4	0	genome.wustl.edu	37	chr1	78481910	78481910	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tcatccaaagaagtacttagGaaacatcttcctgcctcata	5	11	3	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	78481910	78481910	G	A	SNP	DNAJB4	ENST00000370763	human	ensembl	69_37n	1	known	silent	c.993	p.R331	1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB4	HGNC	ENSG00000162616	308	1	0.32	230	36	13.53	-	-	-	A	78481910	G	A	78481910	2	1	777	1	0	0	0	0	0	0	0	1	4657	1165	41	2		2	DNAJB4	1	78481910	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	29778478	78481910	170768711	2	67179										
FMO1	0	genome.wustl.edu	37	chr1	171251383	171251383	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgcacatctgcaaaagccaaCcctggccattattggcctca	7	14	2	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	171251383	171251383	C	A	SNP	FMO1	ENST00000354841	human	ensembl	69_37n	1	known	missense	c.1094	p.T365N	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932	191	0	0	270	51	15.84	-	-	-	A	171251383	C	A	171251383	3	1	777	1	0	0	0	0	1	0	0	0	6000	507	18	4	1116	4	FMO1	1	171251383	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	92769473	171251383	77999238	3	67180										
RNF103	0	genome.wustl.edu	37	chr2	86832076	86832076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	acctcgggttgtaatgagcgCaaaaatgaatccatggcctg	11	9	0	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	86832076	86832076	C	T	SNP	RNF103	ENST00000237455	human	ensembl	69_37n	-1	known	silent	c.948	p.L316	1.000	superfamily_Thioredoxin-like_fold	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	335	0	0	251	44	14.86	-	-	-	T	86832076	C	T	86832076	2	4	777	1	0	0	0	0	0	0	0	1	13509	709	25	4		4	RNF103	2	86832076	Silent	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		86832076	156367297	4	67181										
CCDC141	0	genome.wustl.edu	37	chr2	179730515	179730515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tcatttatctcgtctctcatGgcgcagtactccacactacg	6	14	4	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	179730515	179730515	G	A	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	silent	c.2703	p.A901	0.000	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	309	0	0	324	62	16.06	-	-	-	A	179730515	G	A	179730515	2	1	777	1	0	0	0	0	0	0	0	1	2800	1335	47	4		4	CCDC141	2	179730515	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	92898439	179730515	63468858	5	67182										
CHPF	0	genome.wustl.edu	37	chr2	220405780	220405780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ggtgggctgtcagggcacttCggaaatgagggtccccctcc	15	12	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	220405780	220405780	C	T	SNP	CHPF	ENST00000243776	human	ensembl	69_37n	-1	known	missense	c.956	p.R319Q	0.873	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989	126	0	0	115	25	17.86	-	-	-	T	220405780	C	T	220405780	3	4	777	1	0	0	0	0	1	0	0	0	3397	884	31	1	1379	1	CHPF	2	220405780	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	40675265	220405780	22793593	6	67183										
SRGAP3	0	genome.wustl.edu	37	chr3	9027246	9027246	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ctgagctgttggggaacatcTtctcggtgggcgtcacggcc	15	11	3	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	9027246	9027246	T	C	SNP	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	missense	c.3257	p.K1086R	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	20	0	0	30	7	18.92	-	-	-	C	9027246	T	C	9027246	3	2	777	1	0	0	0	0	1	0	0	0	15238	1609	56	5	46	5	SRGAP3	3	9027246	Missense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09		9027246	188995184	7	67184										
DHX30	0	genome.wustl.edu	37	chr3	47891404	47891404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgagcgacagtgacctgctgCggctggagggtgactcgcgt	17	10	0	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	47891404	47891404	C	T	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	missense	c.3379	p.R1127W	0.999	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	35	0	0	42	5	10.64	-	-	-	T	47891404	C	T	47891404	3	4	777	1	0	0	0	0	1	0	0	0	4540	759	27	1	3468	1	DHX30	3	47891404	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	38864158	47891404	150131026	8	67185										
KBTBD8	0	genome.wustl.edu	37	chr3	67054333	67054333	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gatatagtcacaggaagggtGtttaaactatgcaaaccacc	9	8	1	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	67054333	67054333	G	A	SNP	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	silent	c.942	p.V314	0.999	pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	133	0	0	168	32	16	-	-	-	A	67054333	G	A	67054333	2	1	777	1	0	0	0	0	0	0	0	1	8053	1364	48	4		4	KBTBD8	3	67054333	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	19162929	67054333	130968097	9	67186										
ROBO2	0	genome.wustl.edu	37	chr3	77623847	77623847	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	aatgagttccaaggaatggaTagtgaatctaaaacggttcg	11	5	1	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	77623847	77623847	T	G	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.2169	p.D723E	0.996	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	91	0	0	63	27	30	-	-	-	G	77623847	T	G	77623847	3	3	777	1	0	0	0	0	1	0	0	0	13600	1403	49	5	2225	5	ROBO2	3	77623847	Missense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09	10569514	77623847	120398583	10	67187										
KIAA1257	0	genome.wustl.edu	37	chr3	128707653	128707653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	taggttcttcatcgtccggcAgaaggaaatactcaatgtgg	11	8	3	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	128707653	128707653	A	G	SNP	KIAA1257	ENST00000265068	human	ensembl	69_37n	-1	known	missense	c.371	p.L124P	1.000	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656	469	0	0	484	90	15.65	-	-	-	G	128707653	A	G	128707653	3	3	777	1	0	0	0	0	1	0	0	0	8270	188	7	5	882	5	KIAA1257	3	128707653	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09	51083806	128707653	69314777	11	67188										
TBL1XR1	0	genome.wustl.edu	37	chr3	176744190	176744190	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgatgcactggctccaacttTgtctcctgctgcattccagc	8	14	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	176744190	176744190	T	A	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	nonsense	c.1489	p.K497*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	535	0	0	583	106	15.34	-	-	-	A	176744190	T	A	176744190	4	1	777	1	0	0	0	0	0	1	0	0	15735	1821	63	5	63	5	TBL1XR1	3	176744190	Nonsense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09	48036537	176744190	21278240	12	67189										
TBL1XR1	0	genome.wustl.edu	37	chr3	176771659	176771659	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ggcaccatttatattggactGactgatatggctttctatac	8	8	1	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	176771659	176771659	G	A	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	nonsense	c.106	p.Q36*	1.000	smart_LisH_dimerisation,pfscan_LisH_dimerisation	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	381	0	0	382	84	18.03	-	-	-	A	176771659	G	A	176771659	4	1	777	1	0	0	0	0	0	1	0	0	15735	1299	45	2	1490	2	TBL1XR1	3	176771659	Nonsense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	27469	176771659	21250771	13	67190										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	273	0	0	141	145	50.7	-	-	-	G	178952085	A	G	178952085	3	3	777	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09	2180426	178952085	19070345	14	67191										
BCL6	0	genome.wustl.edu	37	chr3	187451419	187451419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cgactccggagacgattaagGttgagaagaacatcactggc	12	9	1	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	187451419	187451419	G	C	SNP	BCL6	ENST00000232014	human	ensembl	69_37n	-1	known	missense	c.63	p.N21K	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916	192	0	0	201	31	13.36	-	-	-	C	187451419	G	C	187451419	3	2	777	1	0	0	0	0	1	0	0	0	1380	1252	44	4	2089	4	BCL6	3	187451419	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	8499334	187451419	10571011	15	67192										
PDHA2	0	genome.wustl.edu	37	chr4	96761984	96761984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gaataacctatatggaatggGaacatctactgagagagcag	11	6	1	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	4	96761984	96761984	G	T	SNP	PDHA2	ENST00000295266	human	ensembl	69_37n	1	known	missense	c.683	p.G228V	1.000	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114	352	0	0	322	50	13.44	-	-	-	T	96761984	G	T	96761984	3	4	777	1	0	0	0	0	1	0	0	0	11738	1174	41	2	685	2	PDHA2	4	96761984	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		96761984	94392292	16	67193										
ADAMTS16	0	genome.wustl.edu	37	chr5	5318312	5318312	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgcctggctgggggccggccGgcctcaggctgcctcctgca	16	16	1	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	5318312	5318312	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	1	known	silent	c.3477	p.P1159	0.106	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	72	0	0	91	21	18.75	-	-	-	A	5318312	G	A	5318312	2	1	777	1	0	0	0	0	0	0	0	1	261	1103	39	1		1	ADAMTS16	5	5318312	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		5318312	175596948	17	67194										
MAP3K1	0	genome.wustl.edu	37	chr5	56160565	56160565	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	aaaaaatgttgtgaagtttcAgagtggcagaatcacaccac	9	7	2	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	56160565	56160565	A	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.839	p.Q280P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	117	0	0	110	19	14.73	-	-	-	C	56160565	A	C	56160565	3	2	777	1	0	0	0	0	1	0	0	0	9314	188	7	5	853	5	MAP3K1	5	56160565	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09	50842253	56160565	124754695	18	67195										
MAP3K1	0	genome.wustl.edu	37	chr5	56177598	56177598	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	aggatgcgtcgccgtttgatGgctattgcagatgaggtgga							TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	56177598	56177598	G	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2571	p.A858fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	216	0	0	179	45	20.09	-	-	-	-	56177598	G	-	56177598	7	5	777	1	0	1	0	1	0	0	0	0	9314	1348	47	0	2625	0	MAP3K1	5	56177598	Frame_Shift_Del	DEL	G	TCGA-E2-A15G-01A-11D-A12B-09	17033	56177598	124737662	19	67196										
RARS2	0	genome.wustl.edu	37	chr6	88279250	88279250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ttaactctttttgggaaattGgaactgcagatattgatgtg	10	4	1	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	88279250	88279250	G	T	SNP	RARS2	ENST00000369536	human	ensembl	69_37n	-1	known	missense	c.95	p.P32Q	0.996	superfamily_Arg-tRNA-synth_N,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS2	HGNC	ENSG00000146282	478	0	0	354	71	16.71	-	-	-	T	88279250	G	T	88279250	3	4	777	1	0	0	0	0	1	0	0	0	13142	1348	47	4	1717	4	RARS2	6	88279250	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		88279250	82835817	20	67197										
MYB	0	genome.wustl.edu	37	chr6	135511399	135511399	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gaagttaagaaaacctcctgGacagaagaggaagacagaat	11	6	0	5			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	135511399	135511399	G	A	SNP	MYB	ENST00000341911	human	ensembl	69_37n	1	known	nonsense	c.441	p.W147*	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	287	0	0	234	66	22	-	-	-	A	135511399	G	A	135511399	4	1	777	1	0	0	0	0	0	1	0	0	10079	1183	41	2	459	2	MYB	6	135511399	Nonsense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	47232149	135511399	35603668	21	67198										
PLEKHG1	0	genome.wustl.edu	37	chr6	151055039	151055039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cagagggacaaccccgccacGgggcaacagaacgcggatga	14	13	0	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	151055039	151055039	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	silent	c.222	p.T74	0.011	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	76	0	0	64	19	22.89	-	-	-	A	151055039	G	A	151055039	2	1	777	1	0	0	0	0	0	0	0	1	12142	1103	39	1		1	PLEKHG1	6	151055039	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	15543640	151055039	20060028	22	67199										
GDF6	0	genome.wustl.edu	37	chr8	97157010	97157010	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gggaagtcgcatacaccctcGcagtgataggcctcgtactc	11	13	0	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	8	97157010	97157010	G	A	SNP	GDF6	ENST00000287020	human	ensembl	69_37n	-1	known	silent	c.1149	p.C383	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466	175	0	0	223	56	20	-	-	-	A	97157010	G	A	97157010	2	1	777	1	0	0	0	0	0	0	0	1	6369	1079	38	1		1	GDF6	8	97157010	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		97157010	49207012	23	67200										
C9orf69	0	genome.wustl.edu	37	chr9	139008534	139008534	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cagaagagggcggccagcgcAccccagagcgccgcagtgaa	15	14	0	4			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	9	139008534	139008534	A	T	SNP	C9orf69	ENST00000561457	human	ensembl	69_37n	-1	known	missense	c.287	p.V96E	0.996	NULL	NULL	-	no_errors	C9orf69	HGNC	ENSG00000238227	44	0	0	32	17	32.69	-	-	-	T	139008534	A	T	139008534	3	4	777	1	0	0	0	0	1	0	0	0	2517	159	6	5	124	5	C9orf69	9	139008534	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09		139008534	2204897	24	67201										
C9orf142	0	genome.wustl.edu	37	chr9	139888077	139888077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tggacctggagtcaggaggcGgtgtccaggagagtcgctca	17	9	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	9	139888077	139888077	G	A	SNP	C9orf142	ENST00000371620	human	ensembl	69_37n	1	known	missense	c.536	p.R179Q	0.998	NULL	NULL	-	no_errors	C9orf142	HGNC	ENSG00000148362	143	0	0	115	32	21.77	-	-	-	A	139888077	G	A	139888077	3	1	777	1	0	0	0	0	1	0	0	0	2486	1116	39	1	558	1	C9orf142	9	139888077	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	879543	139888077	1325354	25	67202										
TAF3	0	genome.wustl.edu	37	chr10	8006835	8006835	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tccactcctctgcctctttcCggtggaacctcaagttccga	7	16	3	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	8006835	8006835	C	G	SNP	TAF3	ENST00000344293	human	ensembl	69_37n	1	known	silent	c.1362	p.S454	0.065	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	101	0	0	68	31	31	-	-	-	G	8006835	C	G	8006835	2	3	777	1	0	0	0	0	0	0	0	1	15617	639	23	3		3	TAF3	10	8006835	Silent	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		8006835	127527912	26	67203										
SLC16A12	0	genome.wustl.edu	37	chr10	91198855	91198855	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	atgccacttcctgacatggcGataccataagcaagggcttt	9	11	0	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	91198855	91198855	G	A	SNP	SLC16A12	ENST00000371790	human	ensembl	69_37n	-1	known	silent	c.534	p.I178	0.937	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779	74	0	0	61	11	15.28	-	-	-	A	91198855	G	A	91198855	2	1	777	1	0	0	0	0	0	0	0	1	14494	1048	37	1		1	SLC16A12	10	91198855	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	83192020	91198855	44335892	27	67204										
ZFYVE27	0	genome.wustl.edu	37	chr10	99502856	99502856	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ctctctgtattgtaggtggcAgatgcctttgtgttccttgc							TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	99502856	99502856	A	-	DEL	ZFYVE27	ENST00000356257	human	ensembl	69_37n	1	known	frame_shift_del	c.203	p.Q68fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE27	HGNC	ENSG00000155256	430	0	0	461	88	15.83	-	-	-	-	99502856	A	-	99502856	7	5	777	1	0	1	0	1	0	0	0	0	17765	188	7	0	209	0	ZFYVE27	10	99502856	Frame_Shift_Del	DEL	A	TCGA-E2-A15G-01A-11D-A12B-09	8304001	99502856	36031891	28	67205										
SBF2	0	genome.wustl.edu	37	chr11	9989966	9989966	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	attctggttcttagcaacatTttcctgtattaattcctgaa	5	8	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	9989966	9989966	T	A	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.1522	p.N508Y	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	281	0	0	261	48	15.53	-	-	-	A	9989966	T	A	9989966	3	1	777	1	0	0	0	0	1	0	0	0	13946	1841	64	5	4135	5	SBF2	11	9989966	Missense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09		9989966	125016550	29	67206										
KCNK4	0	genome.wustl.edu	37	chr11	64067025	64067026	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cccgcccacggcctcggcccINStggattatcccagcgagaac							TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	64067025	64067026	-	T	INS	KCNK4	ENST00000394525	human	ensembl	69_37n	1	known	frame_shift_ins	c.1009_1010	p.D338fs	0.987:1.000	prints_2pore_dom_K_chnl_TRAAK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450	9	0	0	2	2	50	-	-	-	T	64067026	-	T	64067025	7	5	777	1	0	1	1	0	0	0	0	0	8122	680	24	0	1031	0	KCNK4	11	64067025	Frame_Shift_Ins	INS	-	TCGA-E2-A15G-01A-11D-A12B-09	54077059	64067025	70939491	30	67207										
PCNXL3	0	genome.wustl.edu	37	chr11	65396838	65396838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ctctgaacagcactaaacgtGtggatcattccaacacccgc	7	14	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	65396838	65396838	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.3952	p.V1318M	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	159	0	0	118	71	37.57	-	-	-	A	65396838	G	A	65396838	3	1	777	1	0	0	0	0	1	0	0	0	11666	1377	48	4	4050	4	PCNXL3	11	65396838	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	1329813	65396838	69609678	31	67208										
FGF4	0	genome.wustl.edu	37	chr11	69588113	69588113	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	aagtgggtgaccttcatggtGggcgacactcggttcccctt	13	11	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	69588113	69588113	G	T	SNP	FGF4	ENST00000168712	human	ensembl	69_37n	-1	known	silent	c.585	p.P195	0.999	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF4	HGNC	ENSG00000075388	334	0	0	279	73	20.68	-	-	-	T	69588113	G	T	69588113	2	4	777	1	0	0	0	0	0	0	0	1	5900	1335	47	4		4	FGF4	11	69588113	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	4191275	69588113	65418403	32	67209										
CCDC67	0	genome.wustl.edu	37	chr11	93097377	93097377	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgagattacatcagatgaaaCaaaacaaagttccacgaaaa	6	7	1	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	93097377	93097377	C	T	SNP	CCDC67	ENST00000298050	human	ensembl	69_37n	1	known	nonsense	c.349	p.Q117*	1.000	superfamily_MHC_II-assoc_invariant_trimer	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	264	0	0	128	66	34.02	-	-	-	T	93097377	C	T	93097377	4	4	777	1	0	0	0	0	0	1	0	0	2866	479	17	4	363	4	CCDC67	11	93097377	Nonsense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	23509264	93097377	41909139	33	67210										
IRAK4	0	genome.wustl.edu	37	chr12	44180307	44180307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cagttgaagctatgtactctGttgctagtcaatgtctgcat	9	8	3	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	44180307	44180307	G	T	SNP	IRAK4	ENST00000448290	human	ensembl	69_37n	1	known	missense	c.1294	p.V432F	0.892	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001	75	0	0	78	19	19.59	-	-	-	T	44180307	G	T	44180307	3	4	777	1	0	0	0	0	1	0	0	0	7879	1377	48	4	1332	4	IRAK4	12	44180307	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		44180307	89671588	34	67211										
POLR3B	0	genome.wustl.edu	37	chr12	106824180	106824180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	agtttgaaaaaacgagaaaaGtgagtggtcctcgctccctc	10	9	0	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	106824180	106824180	G	A	SNP	POLR3B	ENST00000228347	human	ensembl	69_37n	1	known	missense	c.1393	p.V465M	1.000	pfam_RNA_pol_Rpb2_3	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503	172	0	0	197	38	16.17	-	-	-	A	106824180	G	A	106824180	3	1	777	1	0	0	0	0	1	0	0	0	12303	1029	36	4	1447	4	POLR3B	12	106824180	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	62643873	106824180	27027715	35	67212										
IFT81	0	genome.wustl.edu	37	chr12	110566885	110566885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gttttttaataaaacttgagGtaccaagtgagtttcttcag	8	5	2	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	110566885	110566885	G	A	SNP	IFT81	ENST00000242591	human	ensembl	69_37n	1	known	missense	c.379	p.V127I	0.998	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970	195	0	0	177	94	34.69	-	-	-	A	110566885	G	A	110566885	3	1	777	1	0	0	0	0	1	0	0	0	7619	1261	44	4	389	4	IFT81	12	110566885	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	3742705	110566885	23285010	36	67213										
TAOK3	0	genome.wustl.edu	37	chr12	118590144	118590144	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgctctggtaggcgttgagcAgctccatttcctgctggagc	13	11	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	118590144	118590144	A	G	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	missense	c.2423	p.L808P	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	174	0	0	191	54	22.04	-	-	-	G	118590144	A	G	118590144	3	3	777	1	0	0	0	0	1	0	0	0	15641	188	7	5	281	5	TAOK3	12	118590144	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09	8023259	118590144	15261751	37	67214										
NALCN	0	genome.wustl.edu	37	chr13	101756927	101756927	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ttcgaaacggggactcaaacAtcatggaaatgcaagagcag	11	8	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	13	101756927	101756927	A	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.2711	p.M904K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	265	0	0	286	73	20.28	-	-	-	T	101756927	A	T	101756927	3	4	777	1	0	0	0	0	1	0	0	0	10220	217	8	5	2589	5	NALCN	13	101756927	Missense_Mutation	SNP	A	TCGA-E2-A15G-01A-11D-A12B-09		101756927	13412951	38	67215										
CARKD	0	genome.wustl.edu	37	chr13	111274599	111274599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ttcgctacgtaaagcacattCgataaaggatatggaaaata	8	6	0	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	13	111274599	111274599	C	T	SNP	CARKD	ENST00000309957	human	ensembl	69_37n	1	known	missense	c.137	p.S46L	0.020	NULL	pfam_UPF_carb_kinase-rel,tigrfam_UPF_carb_kinase-rel	-	no_errors	CARKD	HGNC	ENSG00000213995	409	0	0	320	91	22.14	-	-	-	T	111274599	C	T	111274599	3	4	777	1	0	0	0	0	1	0	0	0	2679	893	31	1	143	1	CARKD	13	111274599	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	9517672	111274599	3895279	39	67216										
DYNC1H1	0	genome.wustl.edu	37	chr14	102452485	102452486	+	Frame_Shift_Ins	INS	-	-	C													0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgagtcacgttcgtgacttgINSccccctgtgtcagggtctat							TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	14	102452485	102452486	-	C	INS	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	frame_shift_ins	c.1923_1924	p.V643fs	1.000:1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	46	0	0	71	10	12.35	-	-	-	C	102452486	-	C	102452485	7	5	777	1	0	1	1	0	0	0	0	0	4876	1310	46	0	1953	0	DYNC1H1	14	102452485	Frame_Shift_Ins	INS	-	TCGA-E2-A15G-01A-11D-A12B-09		102452485	4897055	40	67217										
TLN2	0	genome.wustl.edu	37	chr15	63102180	63102180	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	agaaccagagccttgcgtttCgggacggagtgcacccttgg	14	11	0	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	63102180	63102180	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	1	known	silent	c.6720	p.F2240	0.567	NULL	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	215	0	0	250	39	13.36	-	-	-	T	63102180	C	T	63102180	2	4	777	1	0	0	0	0	0	0	0	1	16043	883	31	1		1	TLN2	15	63102180	Silent	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		63102180	39429212	41	67218										
HERC1	0	genome.wustl.edu	37	chr15	63970199	63970199	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cctcctatcacagccagcacGggccacacctctatgcaaag	7	17	2	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	63970199	63970199	G	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.6915	p.P2305	0.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	402	0	0	413	92	18.11	-	-	-	C	63970199	G	C	63970199	2	2	777	1	0	0	0	0	0	0	0	1	7108	1103	39	3		3	HERC1	15	63970199	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	868019	63970199	38561193	42	67219										
KIAA1199	0	genome.wustl.edu	37	chr15	81176528	81176528	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ctttttaggtttgacacctaTagatccaagaaagagagtga	9	6	0	5			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	81176528	81176528	T	C	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	silent	c.630	p.Y210	0.125	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	239	0	0	218	68	23.78	-	-	-	C	81176528	T	C	81176528	2	2	777	1	0	0	0	0	0	0	0	1	8265	1413	49	5		5	KIAA1199	15	81176528	Silent	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09	17206329	81176528	21354864	43	67220										
FES	0	genome.wustl.edu	37	chr15	91436887	91436887	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tgccctgtctcacccagggaCctggctgctcggaactgcct	11	16	1	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	91436887	91436887	C	A	SNP	FES	ENST00000328850	human	ensembl	69_37n	1	known	missense	c.2049	p.D683E	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	FES	HGNC	ENSG00000182511	45	0	0	33	12	26.67	-	-	-	A	91436887	C	A	91436887	3	1	777	1	0	0	0	0	1	0	0	0	5866	506	18	4	2111	4	FES	15	91436887	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	10260359	91436887	11094505	44	67221										
ZFHX3	0	genome.wustl.edu	37	chr16	72830186	72830186	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ttggattgagctgatgctggTagagttgggccaggtccgca	16	7	0	3			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	16	72830186	72830186	T	C	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.6395	p.Y2132C	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	61	0	0	25	12	32.43	-	-	-	C	72830186	T	C	72830186	3	2	777	1	0	0	0	0	1	0	0	0	17730	1638	57	5	4724	5	ZFHX3	16	72830186	Missense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09		72830186	17524567	45	67222										
USP6	0	genome.wustl.edu	37	chr17	5072218	5072218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cactcacaccccagggggatGagctctccaagcccaggatt	10	15	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	5072218	5072218	G	A	SNP	USP6	ENST00000250066	human	ensembl	69_37n	1	known	missense	c.3385	p.E1129K	0.949	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19	-	no_errors	USP6	HGNC	ENSG00000129204	223	0	0	185	47	20.26	-	-	-	A	5072218	G	A	5072218	3	1	777	1	0	0	0	0	1	0	0	0	17183	1291	45	2	3487	2	USP6	17	5072218	Missense_Mutation	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		5072218	76122992	46	67223										
GABARAP	0	genome.wustl.edu	37	chr17	7145570	7145570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ctgtcctcaccggcacccggTccgggtatttctttcggatc	10	15	2	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	7145570	7145570	T	C	SNP	GABARAP	ENST00000302386	human	ensembl	69_37n	-1	known	missense	c.80	p.D27G	1.000	pfam_Atg8_ubiquitin-like	pfam_Atg8_ubiquitin-like,pfam_Autophagy-rel_prot_12	-	no_errors	GABARAP	HGNC	ENSG00000170296	83	0	0	63	17	20.48	-	-	-	C	7145570	T	C	7145570	3	2	777	1	0	0	0	0	1	0	0	0	6201	1667	58	5	289	5	GABARAP	17	7145570	Missense_Mutation	SNP	T	TCGA-E2-A15G-01A-11D-A12B-09	2073352	7145570	74049640	47	67224										
MYH13	0	genome.wustl.edu	37	chr17	10213133	10213133	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cgcaagatcttgctctcctcGtgttccaaggaaccctgacg	9	14	2	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	10213133	10213133	G	A	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	silent	c.4671	p.H1557	0.622	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	118	1	0.84	101	17	14.29	-	-	-	A	10213133	G	A	10213133	2	1	777	1	0	0	0	0	0	0	0	1	10104	1136	40	1		1	MYH13	17	10213133	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	3067563	10213133	70982077	48	67225										
HOXB2	0	genome.wustl.edu	37	chr17	46620904	46620904	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tctcggtgctgcgtctgccgCttgtgcttcatgcgccggtt	13	13	3	0			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	46620904	46620904	C	A	SNP	HOXB2	ENST00000330070	human	ensembl	69_37n	-1	known	missense	c.597	p.K199N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXB2	HGNC	ENSG00000173917	8	0	0	10	4	28.57	-	-	-	A	46620904	C	A	46620904	3	1	777	1	0	0	0	0	1	0	0	0	7352	796	28	4	477	4	HOXB2	17	46620904	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	36407771	46620904	34574306	49	67226										
CDH20	0	genome.wustl.edu	37	chr18	59167643	59167643	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	cgtcatccaagtgacagccaCagatgcagatgacccgacct	9	14	1	4			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	18	59167643	59167643	C	A	SNP	CDH20	ENST00000262717	human	ensembl	69_37n	1	known	missense	c.569	p.T190K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542	341	0	0	344	72	17.27	-	-	-	A	59167643	C	A	59167643	3	1	777	1	0	0	0	0	1	0	0	0	3135	478	17	4	579	4	CDH20	18	59167643	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		59167643	18909605	50	67227										
MKNK2	0	genome.wustl.edu	37	chr19	2041144	2041144	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ttggcagcgcaggagatgtgGgcccagtccttgtcggggaa	17	9	0	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	2041144	2041144	G	T	SNP	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	silent	c.1005	p.A335	0.993	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	164	0	0	221	57	20.5	-	-	-	T	2041144	G	T	2041144	2	4	777	1	0	0	0	0	0	0	0	1	9676	1219	43	4		4	MKNK2	19	2041144	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		2041144	57087839	51	67228										
DENND1C	0	genome.wustl.edu	37	chr19	6480063	6480063	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	acacagcaggggagccccctCtgtgggatgcagaaggggtc	16	11	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	6480063	6480063	C	T	SNP	DENND1C	ENST00000381480	human	ensembl	69_37n	-1	known	splice_site	c.18-1	e2-1	0.919	-	-	-	no_errors	DENND1C	HGNC	ENSG00000205744	128	1	0.78	127	36	22.09	-	-	-	T	6480063	C	T	6480063	5	4	777	1	0	0	0	0	0	0	1	0	4464	927	32	2	2476	2	DENND1C	19	6480063	Splice_Site	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09	4438919	6480063	52648920	52	67229										
MYBPC2	0	genome.wustl.edu	37	chr19	50939058	50939058	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ccacccgaggaccagtccccGactgcagaggagcccaccgg	12	18	0	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	50939058	50939058	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	silent	c.135	p.P45	0.117	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	118	0	0	78	20	20.41	-	-	-	A	50939058	G	A	50939058	2	1	777	1	0	0	0	0	0	0	0	1	10084	1045	37	1		1	MYBPC2	19	50939058	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	44458995	50939058	8189925	53	67230										
MYBPC2	0	genome.wustl.edu	37	chr19	50964798	50964798	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	ccctccctgtccccacactaGgagtggttcaacgtctatga	8	15	2	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	50964798	50964798	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	splice_site	c.2932-1	e25-1	1.000	-	-	-	no_errors	MYBPC2	HGNC	ENSG00000086967	114	0	0	114	66	36.67	-	-	-	A	50964798	G	A	50964798	5	1	777	1	0	0	0	0	0	0	1	0	10084	1014	35	4	3029	4	MYBPC2	19	50964798	Splice_Site	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09	25740	50964798	8164185	54	67231										
RRP1	0	genome.wustl.edu	37	chr21	45217847	45217847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	gacgattgtggagcaggcccCgcttgccattgaagacctcc	12	13	0	2			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	21	45217847	45217847	C	T	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	1	known	missense	c.677	p.P226L	0.990	NULL	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	150	0	0	97	55	35.95	-	-	-	T	45217847	C	T	45217847	3	4	777	1	0	0	0	0	1	0	0	0	13771	652	23	1	707	1	RRP1	21	45217847	Missense_Mutation	SNP	C	TCGA-E2-A15G-01A-11D-A12B-09		45217847	2912048	55	67232										
BRS3	0	genome.wustl.edu	37	chrX	135574435	135574435	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	4	0.848714113012736	1.07567049808429	0	1.19978632478632	0.0285714285714286	0.251737451737452	0	tctcttaccaccctggctgtGatgggaacggtcccgggcac	12	14	1	1			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	X	135574435	135574435	G	A	SNP	BRS3	ENST00000370648	human	ensembl	69_37n	1	known	silent	c.1101	p.V367	0.036	prints_Bombesin_rcpt_3	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239	162	0	0	130	24	15.58	-	-	-	A	135574435	G	A	135574435	2	1	777	1	0	0	0	0	0	0	0	1	1530	1277	45	2		2	BRS3	23	135574435	Silent	SNP	G	TCGA-E2-A15G-01A-11D-A12B-09		135574435	19696125	56	67233										
IFI44	0	genome.wustl.edu	37	chr1	79115985	79115985	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagggtagtgtccatggattCcgtaatggagttttgcttga	13	5	0	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	1	79115985	79115985	C	A	SNP	IFI44	ENST00000370747	human	ensembl	69_37n	1	known	missense	c.105	p.F35L	0.003	pfam_TLDc	pfam_TLDc	-	no_errors	IFI44	HGNC	ENSG00000137965	299	0	0	318	61	16.09	-	-	-	A	79115985	C	A	79115985	3	1	778	1	0	0	0	0	1	0	0	0	7571	854	30	2	107	2	IFI44	1	79115985	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		79115985	170134636	1	67234										
RGS7	0	genome.wustl.edu	37	chr1	240969512	240969512	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgtcataactcttggaatcCaagttaatagcactgggggc	10	8	2	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	1	240969512	240969512	C	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	missense	c.1197	p.L399F	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	396	0	0	578	79	12.01	-	-	-	A	240969512	C	A	240969512	3	1	778	1	0	0	0	0	1	0	0	0	13394	593	21	4	282	4	RGS7	1	240969512	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09	161853527	240969512	8281109	2	67235										
RAB11FIP5	0	genome.wustl.edu	37	chr2	73303155	73303156	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	gtccaccatctggccagcctINSggggggcctgggtcacaggc							TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	2	73303155	73303156	-	G	INS	RAB11FIP5	ENST00000258098	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1724_1723	p.Q575fs	0.906:0.968	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	100	0	0	57	34	37.36	-	-	-	G	73303156	-	G	73303155	7	5	778	1	0	1	1	0	0	0	0	0	12980	1580	55	0	245	0	RAB11FIP5	2	73303155	Frame_Shift_Ins	INS	-	TCGA-E2-A15H-01A-11D-A12B-09		73303155	169896218	3	67236										
WDR33	0	genome.wustl.edu	37	chr2	128522166	128522166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagaaaaccagtgcaaaatgCggcagacagtacatctctaa	9	9	1	2			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	2	128522166	128522166	C	T	SNP	WDR33	ENST00000409658	human	ensembl	69_37n	-1	known	missense	c.862	p.A288T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	102	0	0	65	39	37.5	-	-	-	T	128522166	C	T	128522166	3	4	778	1	0	0	0	0	1	0	0	0	17384	768	27	1	3625	1	WDR33	2	128522166	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09	55219011	128522166	114677207	4	67237										
POTEE	0	genome.wustl.edu	37	chr2	131976471	131976471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcatgctcagggacactgacGtgaacaagaaggacaagcaa	11	9	2	3			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	2	131976471	131976471	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	missense	c.496	p.V166M	0.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	440	2	0.45	367	102	21.75	-	-	-	A	131976471	G	A	131976471	3	1	778	1	0	0	0	0	1	0	0	0	12338	1145	40	1	498	1	POTEE	2	131976471	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	3454305	131976471	111222902	5	67238										
TNIK	0	genome.wustl.edu	37	chr3	170784081	170784081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggatctcaatagctttctcGccccagcccattatctgatt	6	14	3	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	3	170784081	170784081	G	A	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	silent	c.3894	p.G1298	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	296	0	0	237	112	31.82	-	-	-	A	170784081	G	A	170784081	2	1	778	1	0	0	0	0	0	0	0	1	16408	1074	38	1		1	TNIK	3	170784081	Silent	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09		170784081	27238349	6	67239										
DMP1	0	genome.wustl.edu	37	chr4	88584457	88584457	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	gaccaagatgacaatgactgCcaagacggctattagcatca							TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	4	88584457	88584457	C	-	DEL	DMP1	ENST00000339673	human	ensembl	69_37n	1	known	frame_shift_del	c.1527	p.Q510fs	1.000	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592	82	0	0	81	22	21.15	-	-	-	-	88584457	C	-	88584457	7	5	778	1	0	1	0	1	0	0	0	0	4619	747	26	0	1545	0	DMP1	4	88584457	Frame_Shift_Del	DEL	C	TCGA-E2-A15H-01A-11D-A12B-09		88584457	102569819	7	67240										
PHACTR2	0	genome.wustl.edu	37	chr6	144070161	144070161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacacgacaaagtagagaggAgctgataagaaggggagtgc	15	6	0	3			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	6	144070161	144070161	A	G	SNP	PHACTR2	ENST00000440869	human	ensembl	69_37n	1	known	missense	c.254	p.E85G	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	487	2	0.41	288	123	29.85	-	-	-	G	144070161	A	G	144070161	3	3	778	1	0	0	0	0	1	0	0	0	11884	304	11	5	281	5	PHACTR2	6	144070161	Missense_Mutation	SNP	A	TCGA-E2-A15H-01A-11D-A12B-09		144070161	27044906	8	67241										
PPIL4	0	genome.wustl.edu	37	chr6	149862525	149862525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagatagactctcctccacGgccagtccctgtaggatcgc	9	14	1	2			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	6	149862525	149862525	G	A	SNP	PPIL4	ENST00000253329	human	ensembl	69_37n	-1	known	missense	c.181	p.R61C	0.932	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013	215	0	0	79	71	47.02	-	-	-	A	149862525	G	A	149862525	3	1	778	1	0	0	0	0	1	0	0	0	12406	1116	39	1	1341	1	PPIL4	6	149862525	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	5792364	149862525	21252542	9	67242										
SDK1	0	genome.wustl.edu	37	chr7	4153004	4153004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagaccctgcaggccccacCcgacgtggctccaaccagcg	10	20	0	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	7	4153004	4153004	C	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3518	p.P1173H	0.998	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	93	0	0	90	17	15.89	-	-	-	A	4153004	C	A	4153004	3	1	778	1	0	0	0	0	1	0	0	0	14056	623	22	4	3612	4	SDK1	7	4153004	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		4153004	154985659	10	67243										
GTF2I	0	genome.wustl.edu	37	chr7	74148311	74148311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aagatttacagcttgataagCcagcttcaggaggtaggtct	11	7	2	2			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	7	74148311	74148311	C	T	SNP	GTF2I	ENST00000324896	human	ensembl	69_37n	1	known	missense	c.1351	p.P451S	0.997	superfamily_GTF2I,pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809	352	0	0	278	125	31.02	-	-	-	T	74148311	C	T	74148311	3	4	778	1	0	0	0	0	1	0	0	0	6918	739	26	4	1409	4	GTF2I	7	74148311	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09	69995307	74148311	84990352	11	67244										
FANCC	0	genome.wustl.edu	37	chr9	97873829	97873829	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agggccgtggggggttcggcTgccgacatcagtaattgctc	16	10	1	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	9	97873829	97873829	T	C	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	silent	c.1245	p.A415	0.000	pfam_Fanconi,pirsf_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	148	0	0	111	58	34.12	-	-	-	C	97873829	T	C	97873829	2	2	778	1	0	0	0	0	0	0	0	1	5710	1567	55	5		5	FANCC	9	97873829	Silent	SNP	T	TCGA-E2-A15H-01A-11D-A12B-09		97873829	43339602	12	67245										
KIAA0368	0	genome.wustl.edu	37	chr9	114170924	114170924	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	catccccaactggaaaatatCccagtgtttggattgctcgt	8	11	0	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	9	114170924	114170924	C	A	SNP	KIAA0368	ENST00000259335	human	ensembl	69_37n	-1	known	missense	c.3113	p.G1038V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813	213	0	0	190	80	29.63	-	-	-	A	114170924	C	A	114170924	3	1	778	1	0	0	0	0	1	0	0	0	8223	855	30	2	3048	2	KIAA0368	9	114170924	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09	16297095	114170924	27042507	13	67246										
GATA3	0	genome.wustl.edu	37	chr10	8115851	8115852	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	cggccgccctctccagacacINSatgtcctccctgagccacat							TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	10	8115851	8115852	-	A	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1200_1201	p.M400fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	173	0	0	137	66	32.51	-	-	-	A	8115852	-	A	8115851	7	5	778	1	0	1	1	0	0	0	0	0	6305	477	17	0	1218	0	GATA3	10	8115851	Frame_Shift_Ins	INS	-	TCGA-E2-A15H-01A-11D-A12B-09		8115851	127418896	14	67247										
XRRA1	0	genome.wustl.edu	37	chr11	74651907	74651907	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcccatcatccagcttgtagAttcctgagaaggccatctcc	7	14	2	2			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	11	74651907	74651907	A	C	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	missense	c.17	p.I6S	0.928	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	114	0	0	102	18	15	-	-	-	C	74651907	A	C	74651907	3	2	778	1	0	0	0	0	1	0	0	0	17558	333	12	5	2429	5	XRRA1	11	74651907	Missense_Mutation	SNP	A	TCGA-E2-A15H-01A-11D-A12B-09		74651907	60354609	15	67248										
FGD4	0	genome.wustl.edu	37	chr12	32778624	32778624	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagagccccaagatggatcCgagataatgaagtgacaatg	11	7	0	5			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	12	32778624	32778624	C	T	SNP	FGD4	ENST00000427716	human	ensembl	69_37n	1	known	nonsense	c.1672	p.R558*	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	199	0	0	189	80	29.74	-	-	-	T	32778624	C	T	32778624	4	4	778	1	0	0	0	0	0	1	0	0	5881	644	23	1	1718	1	FGD4	12	32778624	Nonsense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		32778624	101073271	16	67249										
CYP27B1	0	genome.wustl.edu	37	chr12	58159205	58159205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctacgttgttcagggttccgGcgtagcgggcggccgcttga	16	11	1	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	12	58159205	58159205	G	A	SNP	CYP27B1	ENST00000228606	human	ensembl	69_37n	-1	known	missense	c.464	p.A155V	0.079	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012	43	0	0	30	19	38.78	-	-	-	A	58159205	G	A	58159205	3	1	778	1	0	0	0	0	1	0	0	0	4190	1203	42	4	1090	4	CYP27B1	12	58159205	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	25380581	58159205	75692690	17	67250										
NUAK1	0	genome.wustl.edu	37	chr12	106461239	106461239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctgcctctggtgagcttgGgaggagcacgccagtcctgc	14	13	2	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	12	106461239	106461239	G	A	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.1327	p.P443S	0.022	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	115	0	0	112	62	35.23	-	-	-	A	106461239	G	A	106461239	3	1	778	1	0	0	0	0	1	0	0	0	10785	1232	43	4	662	4	NUAK1	12	106461239	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	48302034	106461239	27390656	18	67251										
RFX4	0	genome.wustl.edu	37	chr12	106995096	106995096	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cctggtgcgggaggcgacagGaccaggcctcgacggcgccg	18	14	0	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	12	106995096	106995096	G	A	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	silent	c.42	p.R14	0.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	70	0	0	47	26	35.62	-	-	-	A	106995096	G	A	106995096	2	1	778	1	0	0	0	0	0	0	0	1	13348	1165	41	2		2	RFX4	12	106995096	Silent	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	533857	106995096	26856799	19	67252										
TMEM132D	0	genome.wustl.edu	37	chr12	129558739	129558739	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	tactttcctcgaaatccatgCccctgtcaatggcagtgatt							TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	12	129558739	129558739	C	-	DEL	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_del	c.2981	p.G994fs	0.545	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	167	0	0	167	48	22.02	-	-	-	-	129558739	C	-	129558739	7	5	778	1	0	1	0	1	0	0	0	0	16142	739	26	0	322	0	TMEM132D	12	129558739	Frame_Shift_Del	DEL	C	TCGA-E2-A15H-01A-11D-A12B-09	22563643	129558739	4293156	20	67253										
NID2	0	genome.wustl.edu	37	chr14	52485857	52485857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcatgaccatcagggtccaCgcaccagcagaaaccagtgc	9	14	2	2			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	14	52485857	52485857	C	T	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	missense	c.2950	p.V984M	0.999	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	53	0	0	51	28	35.44	-	-	-	T	52485857	C	T	52485857	3	4	778	1	0	0	0	0	1	0	0	0	10487	536	19	1	1213	1	NID2	14	52485857	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		52485857	54863683	21	67254										
ZNF668	0	genome.wustl.edu	37	chr16	31073089	31073089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agtggaaggggcgctcccccGagtgcacccggctatgcttc	14	14	0	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	16	31073089	31073089	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	missense	c.1229	p.S410L	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	15	0	0	7	6	46.15	-	-	-	A	31073089	G	A	31073089	3	1	778	1	0	0	0	0	1	0	0	0	18171	1059	37	1	703	1	ZNF668	16	31073089	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09		31073089	59281664	22	67255										
CA7	0	genome.wustl.edu	37	chr16	66884454	66884454	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctacccacagtggtgactggGggccccctggaagggcccta	14	14	0	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	16	66884454	66884454	G	A	SNP	CA7	ENST00000338437	human	ensembl	69_37n	1	known	silent	c.249	p.G83	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA7	HGNC	ENSG00000168748	53	0	0	22	27	55.1	-	-	-	A	66884454	G	A	66884454	2	1	778	1	0	0	0	0	0	0	0	1	2547	1219	43	4		4	CA7	16	66884454	Silent	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	35811365	66884454	23470299	23	67256										
CBX8	0	genome.wustl.edu	37	chr17	77768618	77768618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tggcgatgagggagggccttCccccctgggcccccatgtcc	14	16	0	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	17	77768618	77768618	C	T	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.986	p.G329E	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	29	0	0	39	37	48.68	-	-	-	T	77768618	C	T	77768618	3	4	778	1	0	0	0	0	1	0	0	0	2749	842	30	2	162	2	CBX8	17	77768618	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		77768618	3426592	24	67257										
ANO8	0	genome.wustl.edu	37	chr19	17435958	17435958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttgggtgccagcagggaccCtgggcgcttgggccgttcag	18	11	1	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	19	17435958	17435958	C	A	SNP	ANO8	ENST00000159087	human	ensembl	69_37n	-1	known	missense	c.2899	p.G967W	0.989	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	44	0	0	9	4	30.77	-	-	-	A	17435958	C	A	17435958	3	1	778	1	0	0	0	0	1	0	0	0	702	681	24	4	807	4	ANO8	19	17435958	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09		17435958	41693025	25	67258										
XPNPEP3	0	genome.wustl.edu	37	chr22	41310322	41310322	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacacgtacgtggccagtcaAtggcaggtagggcttctaca	12	11	2	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	22	41310322	41310322	A	G	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	missense	c.1049	p.N350S	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	305	0	0	132	121	47.83	-	-	-	G	41310322	A	G	41310322	3	3	778	1	0	0	0	0	1	0	0	0	17541	101	4	5	1075	5	XPNPEP3	22	41310322	Missense_Mutation	SNP	A	TCGA-E2-A15H-01A-11D-A12B-09		41310322	9994244	26	67259										
PHF21B	0	genome.wustl.edu	37	chr22	45309833	45309833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtctgcacttgaggctgaaTgatgatgacctggaagatgc	13	8	1	6			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	22	45309833	45309833	T	C	SNP	PHF21B	ENST00000313237	human	ensembl	69_37n	-1	known	missense	c.700	p.I234V	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	171	0	0	56	76	57.58	-	-	-	C	45309833	T	C	45309833	3	2	778	1	0	0	0	0	1	0	0	0	11908	1464	51	5	931	5	PHF21B	22	45309833	Missense_Mutation	SNP	T	TCGA-E2-A15H-01A-11D-A12B-09	3999511	45309833	5994733	27	67260										
BCOR	0	genome.wustl.edu	37	chrX	39923040	39923040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	caggtttgccatctgctgccGacacctgctgctcccatcgt	9	16	1	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	X	39923040	39923040	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3668	p.S1223L	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	260	1	0.38	183	60	24.69	-	-	-	A	39923040	G	A	39923040	3	1	778	1	0	0	0	0	1	0	0	0	1390	1059	37	1	1631	1	BCOR	23	39923040	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09		39923040	115347520	28	67261										
BRWD3	0	genome.wustl.edu	37	chrX	79990688	79990688	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atctctcagtaaatttcaccGggcgatctctaaagataaaa	6	9	4	1			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	X	79990688	79990688	G	C	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.923	p.P308R	1.000	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	150	0	0	119	40	25	-	-	-	C	79990688	G	C	79990688	3	2	778	1	0	0	0	0	1	0	0	0	1534	1116	39	3	4613	3	BRWD3	23	79990688	Missense_Mutation	SNP	G	TCGA-E2-A15H-01A-11D-A12B-09	40067648	79990688	75279872	29	67262										
BCORL1	0	genome.wustl.edu	37	chrX	129147755	129147755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctcgctcccgtccccactcCggttctggctcccatgccag	8	20	2	0			TCGA-E2-A15H-01A-11D-A12B-09	TCGA-E2-A15H-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7875c5b3-ced2-4669-a3d5-45739b850af7	3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b	X	129147755	129147755	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.1007	p.P336L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	157	0	0	90	73	44.79	-	-	-	T	129147755	C	T	129147755	3	4	778	1	0	0	0	0	1	0	0	0	1391	652	23	1	1017	1	BCORL1	23	129147755	Missense_Mutation	SNP	C	TCGA-E2-A15H-01A-11D-A12B-09	49157067	129147755	26122805	30	67263										
PANK4	0	genome.wustl.edu	37	chr1	2453125	2453125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agacgacagagaagcggctgCcctgccccgggtggccacag	15	14	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	2453125	2453125	C	G	SNP	PANK4	ENST00000502770	human	ensembl	69_37n	-1	known	missense	c.380	p.G127A	0.000	NULL	NULL	-	no_errors	PANK4	HGNC	ENSG00000157881	92	0	0	75	18	19.35	-	-	-	G	2453125	C	G	2453125	3	3	779	1	0	0	0	0	1	0	0	0	11492	754	26	4		4	PANK4	1	2453125	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		2453125	246797496	1	67264										
CHD5	0	genome.wustl.edu	37	chr1	6185196	6185196	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcttccctcgaaggtcccgcAccagccagtgggagttgaag	12	13	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	6185196	6185196	A	C	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.4358	p.V1453G	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	173	1	0.57	59	46	43.4	-	-	-	C	6185196	A	C	6185196	3	2	779	1	0	0	0	0	1	0	0	0	3357	159	6	5	1558	5	CHD5	1	6185196	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	3732071	6185196	243065425	2	67265										
CASZ1	0	genome.wustl.edu	37	chr1	10705025	10705025	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtatttgaagccattggctgCccgccgctccgccttctcat	9	15	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	10705025	10705025	C	G	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.3817	p.A1273P	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	91	0	0	107	27	20	-	-	-	G	10705025	C	G	10705025	3	3	779	1	0	0	0	0	1	0	0	0	2710	739	26	4	1478	4	CASZ1	1	10705025	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	4519829	10705025	238545596	3	67266										
SPATA21	0	genome.wustl.edu	37	chr1	16748588	16748588	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	acacctgcctccttggggtgCttgcctcccagtggctggcc	12	16	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	16748588	16748588	C	T	SNP	SPATA21	ENST00000466212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA21	HGNC	ENSG00000187144	31	0	0	55	26	32.1	-	-	-	T	16748588	C	T	16748588	1	4	779	0	1	0	0	0	0	0	0	0	15098	812	28	4		4	SPATA21	1	16748588	RNA	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	6043563	16748588	232502033	4	67267										
RUNX3	0	genome.wustl.edu	37	chr1	25228963	25228963	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggtatggtggaagcggctggTggccggcatgcccgccacgc	18	12	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	25228963	25228963	T	G	SNP	RUNX3	ENST00000338888	human	ensembl	69_37n	-1	known	missense	c.940	p.T314P	0.988	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,prints_AML1_Runt,pfscan_AML1/Runt_N	-	no_errors	RUNX3	HGNC	ENSG00000020633	31	0	0	9	14	60.87	-	-	-	G	25228963	T	G	25228963	3	3	779	1	0	0	0	0	1	0	0	0	13835	1696	59	5	353	5	RUNX3	1	25228963	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	8480375	25228963	224021658	5	67268										
KCNQ4	0	genome.wustl.edu	37	chr1	41296813	41296813	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agctcccagcggcggacgggTccttccaagcagcatctggc	13	15	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	41296813	41296813	T	G	SNP	KCNQ4	ENST00000443478	human	ensembl	69_37n	1	novel	missense	c.931	p.S311A	0.676	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNQ4	HGNC	ENSG00000117013	59	0	0	20	16	43.24	-	-	-	G	41296813	T	G	41296813	3	3	779	1	0	0	0	0	1	0	0	0	8139	1654	58	5	1388	5	KCNQ4	1	41296813	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	16067850	41296813	207953808	6	67269										
C1orf123	0	genome.wustl.edu	37	chr1	53683750	53683750	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agtgaatgtcctatggcaggTcactctgatgcaggcatgac	12	9	2	3			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	53683750	53683750	T	G	SNP	C1orf123	ENST00000478839	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf123	HGNC	ENSG00000162384	30	0	0	20	36	63.16	-	-	-	G	53683750	T	G	53683750	1	3	779	0	1	0	0	0	0	0	0	0	2010	1682	58	5		5	C1orf123	1	53683750	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	12386937	53683750	195566871	7	67270										
ZZZ3	0	genome.wustl.edu	37	chr1	78099032	78099032	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	taacacgagtagatcgggaaGcagccatactatggcaagtc	11	9	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	78099032	78099032	G	C	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	missense	c.8	p.A3G	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	48	0	0	24	25	51.02	-	-	-	C	78099032	G	C	78099032	3	2	779	1	0	0	0	0	1	0	0	0	18347	971	34	4	2747	4	ZZZ3	1	78099032	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	24415282	78099032	171151589	8	67271										
DNAJB4	0	genome.wustl.edu	37	chr1	78478782	78478782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	atggacaaggaggtaccttcCggtacacctttcatggcgat	11	10	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	78478782	78478782	C	T	SNP	DNAJB4	ENST00000370763	human	ensembl	69_37n	1	known	missense	c.259	p.R87W	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB4	HGNC	ENSG00000162616	65	0	0	225	26	10.36	-	-	-	T	78478782	C	T	78478782	3	4	779	1	0	0	0	0	1	0	0	0	4657	643	23	1	265	1	DNAJB4	1	78478782	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	379750	78478782	170771839	9	67272										
DNTTIP2	0	genome.wustl.edu	37	chr1	94344542	94344542	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gggtcctctctgtcggcaggTcctcacccttaaccggaccc	10	17	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	94344542	94344542	T	G	SNP	DNTTIP2	ENST00000460191	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNTTIP2	HGNC	ENSG00000067334	38	0	0	16	13	44.83	-	-	-	G	94344542	T	G	94344542	1	3	779	0	1	0	0	0	0	0	0	0	4717	1682	58	5		5	DNTTIP2	1	94344542	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	15865760	94344542	154906079	10	67273										
UBL4B	0	genome.wustl.edu	37	chr1	110655404	110655404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gatggcgctaaaggaggcccAccagccgcagacccagcccc	12	17	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	110655404	110655404	A	C	SNP	UBL4B	ENST00000334179	human	ensembl	69_37n	1	known	missense	c.248	p.H83P	0.000	NULL	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBL4B	HGNC	ENSG00000186150	58	0	0	34	26	41.94	-	-	-	C	110655404	A	C	110655404	3	2	779	1	0	0	0	0	1	0	0	0	16985	159	6	5	250	5	UBL4B	1	110655404	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	16310862	110655404	138595217	11	67274										
APH1A	0	genome.wustl.edu	37	chr1	150238892	150238892	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	atgggcagtggacaggcaggTgggatctgtcaggcgatcag	18	7	3	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	150238892	150238892	T	G	SNP	APH1A	ENST00000461320	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	APH1A	HGNC	ENSG00000117362	68	0	0	19	23	53.49	-	-	-	G	150238892	T	G	150238892	1	3	779	0	1	0	0	0	0	0	0	0	772	1711	59	5		5	APH1A	1	150238892	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	39583488	150238892	99011729	12	67275										
CLK2	0	genome.wustl.edu	37	chr1	155238508	155238508	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttggcttgtacatcgctcttGtagccagtccccgacgtggt	11	12	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	155238508	155238508	G	T	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.478	p.Q160K	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	56	0	0	124	27	17.88	-	-	-	T	155238508	G	T	155238508	3	4	779	1	0	0	0	0	1	0	0	0	3567	1386	48	4	1061	4	CLK2	1	155238508	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	4999616	155238508	94012113	13	67276										
DCAF8	0	genome.wustl.edu	37	chr1	160209535	160209535	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcaaagtccagtactggctgCcgccgtacccaatcccacac	7	17	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	160209535	160209535	C	G	SNP	DCAF8	ENST00000555195	human	ensembl	69_37n	-1	known	silent	c.1137	p.R379	0.927	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	72	0	0	24	17	40.48	-	-	-	G	160209535	C	G	160209535	2	3	779	1	0	0	0	0	0	0	0	1	4308	726	26	4		4	DCAF8	1	160209535	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	4971027	160209535	89041086	14	67277										
VANGL2	0	genome.wustl.edu	37	chr1	160393856	160393856	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ccctaggcttgtagtggcggTggaggaggccttcactcaca	14	11	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	160393856	160393856	T	G	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	1	known	missense	c.1088	p.V363G	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	58	0	0	23	41	64.06	-	-	-	G	160393856	T	G	160393856	3	3	779	1	0	0	0	0	1	0	0	0	17217	1696	59	5	1110	5	VANGL2	1	160393856	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	184321	160393856	88856765	15	67278										
SELL	0	genome.wustl.edu	37	chr1	169677594	169677594	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgcctttagtttgtggcaggCgtcatcgttccatttgcctg	11	10	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	169677594	169677594	C	G	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.475	p.A159P	0.000	pirsf_L-selectin,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	128	0	0	100	62	38.27	-	-	-	G	169677594	C	G	169677594	3	3	779	1	0	0	0	0	1	0	0	0	14104	768	27	3	710	3	SELL	1	169677594	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	9283738	169677594	79573027	16	67279										
MYBPH	0	genome.wustl.edu	37	chr1	203144709	203144709	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gggtgcaggcttagtggctgTggaggctgtaggggcctgtg	21	6	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	203144709	203144709	T	G	SNP	MYBPH	ENST00000255416	human	ensembl	69_37n	-1	known	missense	c.175	p.T59P	0.011	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPH	HGNC	ENSG00000133055	118	1	0.83	44	34	43.59	-	-	-	G	203144709	T	G	203144709	3	3	779	1	0	0	0	0	1	0	0	0	10086	1696	59	5	1298	5	MYBPH	1	203144709	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	33467115	203144709	46105912	17	67280										
LEFTY2	0	genome.wustl.edu	37	chr1	226125151	226125151	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	caccaggcgcctatggctggAgcctccttggcacgagcgcc	13	16	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	226125151	226125151	A	G	SNP	LEFTY2	ENST00000366820	human	ensembl	69_37n	-1	known	missense	c.1091	p.L364P	0.004	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_LRDF,prints_LRDF	-	no_errors	LEFTY2	HGNC	ENSG00000143768	40	0	0	16	13	44.83	-	-	-	G	226125151	A	G	226125151	3	3	779	1	0	0	0	0	1	0	0	0	8770	304	11	5	13	5	LEFTY2	1	226125151	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	22980442	226125151	23125470	18	67281										
OBSCN	0	genome.wustl.edu	37	chr1	228402101	228402101	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	caggtggcctttatggctggCgactgccagacgtccaccca	12	14	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	228402101	228402101	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.1485	p.G495	0.892	superfamily_Fibronectin_type3,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	147	0	0	40	14	25.93	-	-	-	G	228402101	C	G	228402101	2	3	779	1	0	0	0	0	0	0	0	1	10885	755	27	3		3	OBSCN	1	228402101	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	2276950	228402101	20848520	19	67282										
NID1	0	genome.wustl.edu	37	chr1	236141220	236141220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gttgtcagggcaacggcaggTcctgctccctggggtggcca	16	12	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	1	236141220	236141220	T	G	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.3691	p.T1231P	1.000	smart_EGF-like	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	57	0	0	50	71	58.2	-	-	-	G	236141220	T	G	236141220	3	3	779	1	0	0	0	0	1	0	0	0	10486	1667	58	5	56	5	NID1	1	236141220	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	7739119	236141220	13109401	20	67283										
FAM110C	0	genome.wustl.edu	37	chr2	45606	45606	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcgccgccgctgtgccgggaGaagccgctgccggaggtggc	18	14	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	2	45606	45606	G	A	SNP	FAM110C	ENST00000327669	human	ensembl	69_37n	-1	known	silent	c.780	p.F260	1.000	NULL	NULL	-	no_errors	FAM110C	HGNC	ENSG00000184731	89	0	0	16	14	46.67	-	-	-	A	45606	G	A	45606	2	1	779	1	0	0	0	0	0	0	0	1	5438	933	33	2		2	FAM110C	2	45606	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09		45606	243153767	21	67284										
HK2	0	genome.wustl.edu	37	chr2	75105930	75105930	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agatcgtgtccacacgctccGccagcctgtgcgcagccacc	10	18	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	2	75105930	75105930	G	C	SNP	HK2	ENST00000290573	human	ensembl	69_37n	1	known	missense	c.1147	p.A383P	0.997	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	45	0	0	10	12	54.55	-	-	-	C	75105930	G	C	75105930	3	2	779	1	0	0	0	0	1	0	0	0	7242	1087	38	3	1181	3	HK2	2	75105930	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	75060324	75105930	168093443	22	67285										
XIRP2	0	genome.wustl.edu	37	chr2	168115717	168115717	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aaaccttggcatgttgaaacAacagaagctgcccgcaataa	8	10	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	168115717	168115717	A	G	SNP	XIRP2	ENST00000420519	human	ensembl	69_37n	1	known	silent	c.2760	p.T920	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092	127	0	0	75	49	39.52	-	-	-	G	168115717	A	G	168115717	2	3	779	1	0	0	0	0	0	0	0	1	17527	117	5	5		5	XIRP2	2	168115717	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	93009787	168115717	75083656	23	67286										
TTN	0	genome.wustl.edu	37	chr2	179633421	179633421	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttccacataaagtgtggctgTtgatgttgcttttccagcca	9	9	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	2	179633421	179633421	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.9142	p.T3048P	0.805	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	128	0	0	227	58	20.28	-	-	-	G	179633421	T	G	179633421	3	3	779	1	0	0	0	0	1	0	0	0	16832	1725	60	5	102146	5	TTN	2	179633421	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	11517704	179633421	63565952	24	67287										
DNAJB2	0	genome.wustl.edu	37	chr2	220144582	220144582	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcctactacgagatcctagaCgtgccgcgaagtgcgtccgc	11	14	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	220144582	220144582	C	T	SNP	DNAJB2	ENST00000336576	human	ensembl	69_37n	1	known	silent	c.27	p.D9	0.984	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB2	HGNC	ENSG00000135924	136	0	0	70	44	38.6	-	-	-	T	220144582	C	T	220144582	2	4	779	1	0	0	0	0	0	0	0	1	4655	535	19	1		1	DNAJB2	2	220144582	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	40511161	220144582	23054791	25	67288										
CHRND	0	genome.wustl.edu	37	chr2	233399890	233399890	+	Frame_Shift_Del	DEL	G	G	-													0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	acagtggaccgcctctgcctGtttgtggtgacgcctgtcat							TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	233399890	233399890	G	-	DEL	CHRND	ENST00000258385	human	ensembl	69_37n	1	known	frame_shift_del	c.1422	p.F475fs	0.991	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902	193	0	0	133	58	29.44	-	-	-	-	233399890	G	-	233399890	7	5	779	1	0	1	0	1	0	0	0	0	3423	1364	48	0	1468	0	CHRND	2	233399890	Frame_Shift_Del	DEL	G	TCGA-E2-A15I-01A-21D-A135-09	13255308	233399890	9799483	26	67289										
CRBN	0	genome.wustl.edu	37	chr3	3221322	3221322	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	taccaggcaggagcggcaggTggttgcccatgttgtgcgca	16	10	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	3	3221322	3221322	T	G	SNP	CRBN	ENST00000231948	human	ensembl	69_37n	-1	known	missense	c.50	p.H17P	1.000	NULL	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851	107	1	0.93	18	26	57.78	-	-	-	G	3221322	T	G	3221322	3	3	779	1	0	0	0	0	1	0	0	0	3881	1696	59	5	1322	5	CRBN	3	3221322	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09		3221322	194801108	27	67290										
TEX264	0	genome.wustl.edu	37	chr3	51708440	51708440	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtggaagtgagtgctgggtcAccccccatccgcaacgtcac	12	14	2	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	3	51708440	51708440	A	C	SNP	TEX264	ENST00000341333	human	ensembl	69_37n	1	known	silent	c.120	p.S40	0.969	NULL	superfamily_Reg_factor_effector_bac	-	no_errors	TEX264	HGNC	ENSG00000164081	72	0	0	80	33	28.45	-	-	-	C	51708440	A	C	51708440	2	2	779	1	0	0	0	0	0	0	0	1	15878	146	6	5		5	TEX264	3	51708440	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	48487118	51708440	146313990	28	67291										
DNAH12	0	genome.wustl.edu	37	chr3	57414077	57414077	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	taaactcactaaatgtacatTgagtttttagaggcacatat	6	6	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	3	57414077	57414077	T	C	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.5282	p.Q1761R	0.012	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	46	0	0	23	8	25.81	-	-	-	C	57414077	T	C	57414077	3	2	779	1	0	0	0	0	1	0	0	0	4636	1812	63	5	4096	5	DNAH12	3	57414077	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	5705637	57414077	140608353	29	67292										
PIGZ	0	genome.wustl.edu	37	chr3	196674232	196674232	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aggcggcagagccatggcccAccagccacttggcaggctgg	15	14	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	3	196674232	196674232	A	C	SNP	PIGZ	ENST00000412723	human	ensembl	69_37n	-1	known	silent	c.1536	p.G512	0.000	NULL	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227	34	0	0	49	35	40.7	-	-	-	C	196674232	A	C	196674232	2	2	779	1	0	0	0	0	0	0	0	1	11979	146	6	5		5	PIGZ	3	196674232	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	139260155	196674232	1348198	30	67293										
ZNF595	0	genome.wustl.edu	37	chr4	53277	53277	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ctctctgcgttctcggctccGggaggcctcggtgattcagc	13	14	3	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	4	53277	53277	G	C	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	203	0	0	247	150	37.5	-	-	-	C	53277	G	C	53277	1	2	779	0	1	0	0	0	0	0	0	0	18121	1130	39	3		3	ZNF595	4	53277	RNA	SNP	G	TCGA-E2-A15I-01A-21D-A135-09		53277	191100999	31	67294										
DSPP	0	genome.wustl.edu	37	chr4	88536880	88536880	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agtaatagtagtgacagcagCaatagcagtgacagcagcaa	11	7	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	4	88536880	88536880	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3066	p.S1022	0.011	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	46	0	0	446	68	13.23	-	-	-	T	88536880	C	T	88536880	2	4	779	1	0	0	0	0	0	0	0	1	4817	709	25	4		4	DSPP	4	88536880	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	88483603	88536880	102617396	32	67295										
HADH	0	genome.wustl.edu	37	chr4	108955557	108955557	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aagaacacctgagagcgcttTccagccagtgccccgagtgc	11	14	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	4	108955557	108955557	T	C	SNP	HADH	ENST00000510728	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HADH	HGNC	ENSG00000138796	43	0	0	87	30	25.64	-	-	-	C	108955557	T	C	108955557	1	2	779	0	1	0	0	0	0	0	0	0	6993	1798	62	5		5	HADH	4	108955557	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	20418677	108955557	82198719	33	67296										
RXFP3	0	genome.wustl.edu	37	chr5	33937028	33937028	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gagttgccggacggcgcgccGccaggacatcccccgggcag	16	16	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	33937028	33937028	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	69_37n	1	known	silent	c.183	p.P61	0.875	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631	37	0	0	62	27	30.34	-	-	-	A	33937028	G	A	33937028	2	1	779	1	0	0	0	0	0	0	0	1	13847	1074	38	1		1	RXFP3	5	33937028	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09		33937028	146978232	34	67297										
TMEM161B	0	genome.wustl.edu	37	chr5	87516503	87516503	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tagcagccactgtgaaatccAccagccactggtattctgga	9	12	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	87516503	87516503	A	C	SNP	TMEM161B	ENST00000296595	human	ensembl	69_37n	-1	known	missense	c.323	p.V108G	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180	33	0	0	46	107	69.03	-	-	-	C	87516503	A	C	87516503	3	2	779	1	0	0	0	0	1	0	0	0	16172	159	6	5	1172	5	TMEM161B	5	87516503	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	53579475	87516503	93398757	35	67298										
CCDC112	0	genome.wustl.edu	37	chr5	114611288	114611288	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttagttgtcttctcttctttAattagctcttcatatctaaa	3	8	6	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	5	114611288	114611288	A	G	SNP	CCDC112	ENST00000379611	human	ensembl	69_37n	-1	known	silent	c.543	p.I181	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221	93	0	0	60	30	33.33	-	-	-	G	114611288	A	G	114611288	2	3	779	1	0	0	0	0	0	0	0	1	2774	358	13	5		5	CCDC112	5	114611288	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	27094785	114611288	66303972	36	67299										
PPARGC1B	0	genome.wustl.edu	37	chr5	149216613	149216613	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcaccctgccactcctggtcAccagccactcgaaggaactt	7	17	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	149216613	149216613	A	C	SNP	PPARGC1B	ENST00000434684	human	ensembl	69_37n	1	putative	missense	c.1654	p.T552P	0.956	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPARGC1B	HGNC	ENSG00000155846	60	0	0	25	21	45.65	-	-	-	C	149216613	A	C	149216613	3	2	779	1	0	0	0	0	1	0	0	0	12374	146	6	5	2632	5	PPARGC1B	5	149216613	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	34605325	149216613	31698647	37	67300										
NDST1	0	genome.wustl.edu	37	chr5	149915315	149915315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtggcgccccaccactcgggCgtgtaccccgtgcacgtgca	13	17	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	149915315	149915315	C	T	SNP	NDST1	ENST00000261797	human	ensembl	69_37n	1	known	silent	c.1305	p.G435	0.923	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST1	HGNC	ENSG00000070614	50	0	0	51	21	29.17	-	-	-	T	149915315	C	T	149915315	2	4	779	1	0	0	0	0	0	0	0	1	10327	755	27	1		1	NDST1	5	149915315	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	698702	149915315	30999945	38	67301										
HAVCR1	0	genome.wustl.edu	37	chr5	156482504	156482504	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cagggtagtgtgacagatggAcctgcctctccaccaacctt	10	13	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	156482504	156482504	A	C	SNP	HAVCR1	ENST00000425854	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	0.186	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	HAVCR1	HGNC	ENSG00000113249	37	0	0	27	79	73.15	-	-	-	C	156482504	A	C	156482504	2	2	779	1	0	0	0	0	0	0	0	1	7024	262	10	5		5	HAVCR1	5	156482504	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	6567189	156482504	24432756	39	67302										
GABRA6	0	genome.wustl.edu	37	chr5	161116743	161116743	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gccttctccagtatgatctgAttggacaaacagtatctagt	8	9	3	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	5	161116743	161116743	A	C	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	missense	c.631	p.I211L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	206	0	0	170	66	27.85	-	-	-	C	161116743	A	C	161116743	3	2	779	1	0	0	0	0	1	0	0	0	6214	333	12	5	653	5	GABRA6	5	161116743	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	4634239	161116743	19798517	40	67303										
SLIT3	0	genome.wustl.edu	37	chr5	168199899	168199899	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggttgtcctggaggtagtcgGccagccacttcaagtggcag	15	10	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	5	168199899	168199899	G	C	SNP	SLIT3	ENST00000519560	human	ensembl	69_37n	-1	known	missense	c.1346	p.A449G	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C	pfam_EGF-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	161	0	0	29	19	38.78	-	-	-	C	168199899	G	C	168199899	3	2	779	1	0	0	0	0	1	0	0	0	14830	1203	42	4	3317	4	SLIT3	5	168199899	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	7083156	168199899	12715361	41	67304										
ZNF451	0	genome.wustl.edu	37	chr6	56965972	56965972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	caaagggcagccatctgaccCcagccaatctagtttcacag	8	14	3	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	6	56965972	56965972	C	T	SNP	ZNF451	ENST00000370708	human	ensembl	69_37n	1	known	missense	c.758	p.P253L	0.993	NULL	pfam_LAP2alpha	-	no_errors	ZNF451	HGNC	ENSG00000112200	26	0	0	0	2	100	-	-	-	T	56965972	C	T	56965972	3	4	779	1	0	0	0	0	1	0	0	0	18018	638	22	4		4	ZNF451	6	56965972	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		56965972	114149095	42	67305										
HDDC2	0	genome.wustl.edu	37	chr6	125598352	125598352	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	attggtctagctgcttcacaAatttggcttctgcactagat	8	9	3	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	6	125598352	125598352	A	T	SNP	HDDC2	ENST00000398153	human	ensembl	69_37n	-1	known	missense	c.413	p.F138Y	0.997	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906	454	0	0	423	144	25.4	-	-	-	T	125598352	A	T	125598352	3	4	779	1	0	0	0	0	1	0	0	0	7067	14	1	5	209	5	HDDC2	6	125598352	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	68632380	125598352	45516715	43	67306										
TNS3	0	genome.wustl.edu	37	chr7	47342642	47342642	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ctcccgctgtgcgggctggaGaagccactggaggagggaga	18	10	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	7	47342642	47342642	G	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.3363	p.F1121	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	71	0	0	39	25	39.06	-	-	-	A	47342642	G	A	47342642	2	1	779	1	0	0	0	0	0	0	0	1	16439	933	33	2		2	TNS3	7	47342642	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09		47342642	111796021	44	67307										
GRM3	0	genome.wustl.edu	37	chr7	86493622	86493622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgcaagcacgtatgtgccaaCggtgtgcaatgggcgggaag	16	8	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	7	86493622	86493622	C	T	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.2591	p.T864M	1.000	prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt_2	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	615	1	0.16	730	234	24.27	-	-	-	T	86493622	C	T	86493622	3	4	779	1	0	0	0	0	1	0	0	0	6849	536	19	1	2609	1	GRM3	7	86493622	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	39150980	86493622	72645041	45	67308										
ZNF425	0	genome.wustl.edu	37	chr7	148800715	148800715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tggcctgacctagaggctggAgggcttctctttggcatgca	14	10	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	7	148800715	148800715	A	G	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.2248	p.S750P	0.011	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	59	0	0	38	23	37.7	-	-	-	G	148800715	A	G	148800715	3	3	779	1	0	0	0	0	1	0	0	0	17995	304	11	5	14	5	ZNF425	7	148800715	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	62307093	148800715	10337948	46	67309										
SPAG8	0	genome.wustl.edu	37	chr9	35809551	35809551	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	attttcatatgcaatggaaaAcagccacaaaaaaacctacc	4	10	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	9	35809551	35809551	A	C	SNP	SPAG8	ENST00000489063	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPAG8	HGNC	ENSG00000137098	71	0	0	65	65	50	-	-	-	C	35809551	A	C	35809551	1	2	779	0	1	0	0	0	0	0	0	0	15075	58	2	5		5	SPAG8	9	35809551	RNA	SNP	A	TCGA-E2-A15I-01A-21D-A135-09		35809551	105403880	47	67310										
SUSD3	0	genome.wustl.edu	37	chr9	95847083	95847083	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgggaggccaggctgaccccAccagccagtcagctacaact	11	15	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	9	95847083	95847083	A	C	SNP	SUSD3	ENST00000471462	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SUSD3	HGNC	ENSG00000157303	39	0	0	9	18	64.29	-	-	-	C	95847083	A	C	95847083	1	2	779	0	1	0	0	0	0	0	0	0	15500	174	6	5		5	SUSD3	9	95847083	RNA	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	60037532	95847083	45366348	48	67311										
BARHL1	0	genome.wustl.edu	37	chr9	135458334	135458334	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	agcagcagcgactgctcttcGccagcctctccaggaaggga	12	14	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	9	135458334	135458334	G	C	SNP	BARHL1	ENST00000263610	human	ensembl	69_37n	1	known	silent	c.150	p.S50	0.932	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL1	HGNC	ENSG00000125492	51	0	0	20	19	48.72	-	-	-	C	135458334	G	C	135458334	2	2	779	1	0	0	0	0	0	0	0	1	1317	1074	38	3		3	BARHL1	9	135458334	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	39611251	135458334	5755097	49	67312										
LCN12	0	genome.wustl.edu	37	chr9	139847492	139847492	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gatgactcggtgagtggctgTccctgccgttccaagcgggt	15	11	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	9	139847492	139847492	T	G	SNP	LCN12	ENST00000484304	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	LCN12	HGNC	ENSG00000184925	117	1	0.8	24	51	48.11	-	-	-	G	139847492	T	G	139847492	1	3	779	0	1	0	0	0	0	0	0	0	8736	1682	58	5		5	LCN12	9	139847492	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	4389158	139847492	1365939	50	67313										
C9orf142	0	genome.wustl.edu	37	chr9	139888352	139888352	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gaccccccgccaccacctccAcctgcctgtcctgggccagg	9	22	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	9	139888352	139888352	A	C	SNP	C9orf142	ENST00000463765	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	C9orf142	HGNC	ENSG00000148362	30	0	0	26	30	50.85	-	-	-	C	139888352	A	C	139888352	1	2	779	0	1	0	0	0	0	0	0	0	2486	174	6	5		5	C9orf142	9	139888352	RNA	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	40860	139888352	1325079	51	67314										
ANKRD30A	0	genome.wustl.edu	37	chr10	37486216	37486216	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttttgctttttagagcctccCgagaagccatctgccttcga	8	12	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	10	37486216	37486216	C	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	silent	c.2454	p.P818	0.011	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	607	0	0	378	347	47.73	-	-	-	G	37486216	C	G	37486216	2	3	779	1	0	0	0	0	0	0	0	1	658	639	23	3		3	ANKRD30A	10	37486216	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		37486216	98048531	52	67315										
GPRIN2	0	genome.wustl.edu	37	chr10	46999178	46999178	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gcactgtgggcaatgtgtccAccatgggcggcagtgacctg	15	11	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	10	46999178	46999178	A	C	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	1	known	missense	c.298	p.T100P	0.084	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	11	0	0	13	7	35	-	-	-	C	46999178	A	C	46999178	3	2	779	1	0	0	0	0	1	0	0	0	6781	159	6	5	300	5	GPRIN2	10	46999178	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	9512962	46999178	88535569	53	67316										
CCAR1	0	genome.wustl.edu	37	chr10	70496773	70496773	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aaactgctgcattgcagcaaCaagccgcagctgcagcagct	10	13	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	10	70496773	70496773	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	missense	c.214	p.Q72K	1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	26	0	0	54	112	67.47	-	-	-	A	70496773	C	A	70496773	3	1	779	1	0	0	0	0	1	0	0	0	2755	479	17	4	220	4	CCAR1	10	70496773	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	23497595	70496773	65037974	54	67317										
GPAM	0	genome.wustl.edu	37	chr10	113932823	113932823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tagcagcacccacccagtcaGtctgaaacaaagtacaaaca	6	13	2	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	10	113932823	113932823	G	T	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.562	p.L188M	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	59	0	0	324	39	10.74	-	-	-	T	113932823	G	T	113932823	3	4	779	1	0	0	0	0	1	0	0	0	6638	1043	36	4	1984	4	GPAM	10	113932823	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	43436050	113932823	21601924	55	67318										
UROS	0	genome.wustl.edu	37	chr10	127477546	127477546	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggccctgggcggccagcgcgCgagccgtagtggggccgatg	20	13	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	10	127477546	127477546	C	G	SNP	UROS	ENST00000368786	human	ensembl	69_37n	-1	known	missense	c.689	p.R230P	0.000	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690	32	0	0	12	8	40	-	-	-	G	127477546	C	G	127477546	3	3	779	1	0	0	0	0	1	0	0	0	17127	768	27	3	112	3	UROS	10	127477546	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	13544723	127477546	8057201	56	67319										
OR2D2	0	genome.wustl.edu	37	chr11	6912828	6912828	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgggaaattccttgtggctaCtttcctcagagctgccttca	9	11	2	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	6912828	6912828	C	A	SNP	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	missense	c.904	p.V302L	0.592	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	62	0	0	125	67	34.72	-	-	-	A	6912828	C	A	6912828	3	1	779	1	0	0	0	0	1	0	0	0	11067	565	20	4	25	4	OR2D2	11	6912828	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		6912828	128093688	57	67320										
C11orf9	0	genome.wustl.edu	37	chr11	61544784	61544784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	acagcgatgtgttgtggcagCgggcacaggtgcccgacacc	15	12	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	61544784	61544784	C	G	SNP	C11orf9	ENST00000278836	human	ensembl	69_37n	1	known	missense	c.1639	p.R547G	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	78	0	0	21	11	34.38	-	-	-	G	61544784	C	G	61544784	3	3	779	1	0	0	0	0	1	0	0	0	1682	759	27	3	1708	3	C11orf9	11	61544784	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	54631956	61544784	73461732	58	67321										
LTBP3	0	genome.wustl.edu	37	chr11	65315445	65315445	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gccggggttgcagtggcaggAgtagtcaggggggcccggca	21	9	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	65315445	65315445	A	G	SNP	LTBP3	ENST00000301873	human	ensembl	69_37n	-1	known	missense	c.1792	p.S598P	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	93	0	0	25	19	43.18	-	-	-	G	65315445	A	G	65315445	3	3	779	1	0	0	0	0	1	0	0	0	9141	304	11	5	2187	5	LTBP3	11	65315445	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	3770661	65315445	69691071	59	67322										
KDM2A	0	genome.wustl.edu	37	chr11	66985085	66985085	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtcaagttctataggctgggAaaattgcttgcctttcttct	9	8	4	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	66985085	66985085	A	G	SNP	KDM2A	ENST00000525379	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.082	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	29	0	0	35	31	45.59	-	-	-	G	66985085	A	G	66985085	1	3	779	0	1	0	0	0	0	0	0	0	8178	261	9	5		5	KDM2A	11	66985085	RNA	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	1669640	66985085	68021431	60	67323										
TCIRG1	0	genome.wustl.edu	37	chr11	67817893	67817893	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gggcttcaggctgcggcaggTaggtagggggctggcaggca	21	8	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	67817893	67817893	T	G	SNP	TCIRG1	ENST00000530802	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_errors	TCIRG1	HGNC	ENSG00000110719	85	0	0	36	26	41.94	-	-	-	G	67817893	T	G	67817893	5	3	779	1	0	0	0	0	0	0	1	0	15798	1653	57	5		5	TCIRG1	11	67817893	Splice_Site	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	832808	67817893	67188623	61	67324										
DPAGT1	0	genome.wustl.edu	37	chr11	118972221	118972221	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcacatctgctgtcggctggTtttgttgaggtcctgaccac	11	11	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	118972221	118972221	T	G	SNP	DPAGT1	ENST00000354202	human	ensembl	69_37n	-1	known	missense	c.145	p.T49P	0.002	NULL	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269	64	0	0	46	11	19.3	-	-	-	G	118972221	T	G	118972221	3	3	779	1	0	0	0	0	1	0	0	0	4745	1725	60	5	1117	5	DPAGT1	11	118972221	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	51154328	118972221	16034295	62	67325										
OAF	0	genome.wustl.edu	37	chr11	120099649	120099649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gctgcctcgctgcaggcaggTgggggaccacgggaagccct	17	13	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	11	120099649	120099649	T	G	SNP	OAF	ENST00000328965	human	ensembl	69_37n	1	known	missense	c.620	p.V207G	0.003	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232	68	0	0	13	6	31.58	-	-	-	G	120099649	T	G	120099649	3	3	779	1	0	0	0	0	1	0	0	0	10871	1696	59	5	634	5	OAF	11	120099649	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	1127428	120099649	14906867	63	67326										
TECTA	0	genome.wustl.edu	37	chr11	121000388	121000388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttgccttttttccatccttcGgggaagctggaaatttatcg	9	9	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	11	121000388	121000388	G	A	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	silent	c.2409	p.S803	0.975	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	408	2	0.49	316	160	33.54	-	-	-	A	121000388	G	A	121000388	2	1	779	1	0	0	0	0	0	0	0	1	15842	1103	39	1		1	TECTA	11	121000388	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	900739	121000388	14006128	64	67327										
TSPAN11	0	genome.wustl.edu	37	chr12	31116820	31116820	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ctggtggagaagagtggctaCctcagcgtcctggcctccag	14	12	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	12	31116820	31116820	C	A	SNP	TSPAN11	ENST00000261177	human	ensembl	69_37n	1	known	nonsense	c.144	p.Y48*	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900	132	0	0	33	30	47.62	-	-	-	A	31116820	C	A	31116820	4	1	779	1	0	0	0	0	0	1	0	0	16731	518	18	4	150	4	TSPAN11	12	31116820	Nonsense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		31116820	102735075	65	67328										
PFKM	0	genome.wustl.edu	37	chr12	48526792	48526792	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gcagcctcactggggctgacAccttccgttctgagtggagt	13	12	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	12	48526792	48526792	A	C	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	missense	c.379	p.T127P	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	60	0	0	112	31	21.68	-	-	-	C	48526792	A	C	48526792	3	2	779	1	0	0	0	0	1	0	0	0	11839	159	6	5	614	5	PFKM	12	48526792	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	17409972	48526792	85325103	66	67329										
RPH3A	0	genome.wustl.edu	37	chr12	113307580	113307580	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ccaggtgacagtgaagatagGaggggcccgggtcagaagac	17	8	1	5			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	12	113307580	113307580	G	A	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	silent	c.627	p.R209	1.000	NULL	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	304	1	0.33	227	105	31.63	-	-	-	A	113307580	G	A	113307580	2	1	779	1	0	0	0	0	0	0	0	1	13637	1165	41	2		2	RPH3A	12	113307580	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	64780788	113307580	20544315	67	67330										
PABPC3	0	genome.wustl.edu	37	chr13	25671062	25671062	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtaagctttgaaaggcatgaAgatgcacagaaagctgtaga	12	5	0	5			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	13	25671062	25671062	A	G	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	silent	c.726	p.E242	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	40	0	0	504	105	17.24	-	-	-	G	25671062	A	G	25671062	2	3	779	1	0	0	0	0	0	0	0	1	11438	69	3	5		5	PABPC3	13	25671062	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09		25671062	89498816	68	67331										
PABPC3	0	genome.wustl.edu	37	chr13	25671089	25671089	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cagaaagctgtagatgagatGaatggaaaggagctcaatgg	14	4	1	4			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	13	25671089	25671089	G	T	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	missense	c.753	p.M251I	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	46	0	0	628	96	13.26	-	-	-	T	25671089	G	T	25671089	3	4	779	1	0	0	0	0	1	0	0	0	11438	1290	45	2	755	2	PABPC3	13	25671089	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	27	25671089	89498789	69	67332										
KLHL1	0	genome.wustl.edu	37	chr13	70281929	70281929	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgtctgttttgggatcatatCtaaaattcaatgacaatagt	7	5	4	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	13	70281929	70281929	C	T	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	splice_site	c.2016-1	e10-1	1.000	-	-	-	no_errors	KLHL1	HGNC	ENSG00000150361	239	0	0	297	62	17.27	-	-	-	T	70281929	C	T	70281929	5	4	779	1	0	0	0	0	0	0	1	0	8418	927	32	2	239	2	KLHL1	13	70281929	Splice_Site	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	44610840	70281929	44887949	70	67333										
TPP2	0	genome.wustl.edu	37	chr13	103301465	103301465	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gacattaccacccaaatataAccagccattctttgttactt	3	12	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	13	103301465	103301465	A	C	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.2837	p.N946T	0.998	pfam_Peptidase_S8A_TPPII	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	66	0	0	138	58	29.44	-	-	-	C	103301465	A	C	103301465	3	2	779	1	0	0	0	0	1	0	0	0	16508	43	2	5	2923	5	TPP2	13	103301465	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	33019536	103301465	11868413	71	67334										
THTPA	0	genome.wustl.edu	37	chr14	24028236	24028236	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gctgcttcctctcgctcatcCgtcagatgcaatctgtgggc	10	14	4	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	14	24028236	24028236	C	T	SNP	THTPA	ENST00000553985	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-66N24.4	Clone_based_vega_gene	ENSG00000157306	37	0	0	4	4	50	-	-	-	T	24028236	C	T	24028236	1	4	779	0	1	0	0	0	0	0	0	0	15976	667	23	1		1	THTPA	14	24028236	RNA	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		24028236	83321304	72	67335										
RYR3	0	genome.wustl.edu	37	chr15	33923486	33923486	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gatctcaagaaggtcaaactGcccaaaaagtaggtgatttt	9	7	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	15	33923486	33923486	G	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.2859	p.L953	0.982	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	373	0	0	319	114	26.21	-	-	-	T	33923486	G	T	33923486	2	4	779	1	0	0	0	0	0	0	0	1	13856	1306	46	4		4	RYR3	15	33923486	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09		33923486	68607906	73	67336										
SPTBN5	0	genome.wustl.edu	37	chr15	42172431	42172431	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggagcagcactgtctgcttcTccagccacaactggagctcc	10	15	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	15	42172431	42172431	T	C	SNP	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	missense	c.2738	p.E913G	0.648	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	48	0	0	24	34	58.62	-	-	-	C	42172431	T	C	42172431	3	2	779	1	0	0	0	0	1	0	0	0	15213	1551	54	5	8506	5	SPTBN5	15	42172431	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	8248945	42172431	60358961	74	67337										
C15orf59	0	genome.wustl.edu	37	chr15	74032293	74032293	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggctttctgtctagtggctgTgtagggcagaaccgtctgcg	15	9	3	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	15	74032293	74032293	T	G	SNP	C15orf59	ENST00000379822	human	ensembl	69_37n	-1	known	missense	c.847	p.T283P	0.995	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363	53	0	0	25	33	56.9	-	-	-	G	74032293	T	G	74032293	3	3	779	1	0	0	0	0	1	0	0	0	1819	1696	59	5	38	5	C15orf59	15	74032293	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	31859862	74032293	28499099	75	67338										
CCDC78	0	genome.wustl.edu	37	chr16	772688	772688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gggagacggcctagtggctgCcggtccttggatgctggggc	19	10	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	16	772688	772688	C	G	SNP	CCDC78	ENST00000345165	human	ensembl	69_37n	-1	putative	missense	c.949	p.A317P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC78	HGNC	ENSG00000162004	34	0	0	46	19	29.23	-	-	-	G	772688	C	G	772688	3	3	779	1	0	0	0	0	1	0	0	0	2879	754	26	4		4	CCDC78	16	772688	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		772688	89582065	76	67339										
PKD1	0	genome.wustl.edu	37	chr16	2152597	2152597	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cgaccagcggaagtggctggAgaggttcagatggtaactcc	15	9	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	16	2152597	2152597	A	G	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.8986	p.S2996P	1.000	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	122	0	0	50	23	31.51	-	-	-	G	2152597	A	G	2152597	3	3	779	1	0	0	0	0	1	0	0	0	12037	304	11	5	4013	5	PKD1	16	2152597	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	1379909	2152597	88202156	77	67340										
CCNF	0	genome.wustl.edu	37	chr16	2495482	2495482	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cattctgatcgactggctggTggaagttgccaccatgaagg	13	9	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	16	2495482	2495482	T	G	SNP	CCNF	ENST00000397066	human	ensembl	69_37n	1	known	missense	c.953	p.V318G	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C,pfam_F-box_dom_cyclin-like,superfamily_Cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	CCNF	HGNC	ENSG00000162063	86	0	0	38	46	54.76	-	-	-	G	2495482	T	G	2495482	3	3	779	1	0	0	0	0	1	0	0	0	2951	1696	59	5	991	5	CCNF	16	2495482	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	342885	2495482	87859271	78	67341										
SRCAP	0	genome.wustl.edu	37	chr16	30731617	30731617	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gctactgctcctgaccccccAccccggcccaagccagtcaa	7	21	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	16	30731617	30731617	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	silent	c.2952	p.P984	0.995	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	48	0	0	69	28	28.57	-	-	-	C	30731617	A	C	30731617	2	2	779	1	0	0	0	0	0	0	0	1	15226	146	6	5		5	SRCAP	16	30731617	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	28236135	30731617	59623136	79	67342										
USP10	0	genome.wustl.edu	37	chr16	84779261	84779261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttccggtttcagaggatcctGtagccataaagattgcaggt	11	8	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	16	84779261	84779261	G	T	SNP	USP10	ENST00000570191	human	ensembl	69_37n	1	known	missense	c.1186	p.V396L	0.989	NULL	pfam_Peptidase_C19,pfam_Ataxin-2_C,pfscan_Peptidase_C19	-	no_errors	USP10	HGNC	ENSG00000103194	43	0	0	27	19	41.3	-	-	-	T	84779261	G	T	84779261	3	4	779	1	0	0	0	0	1	0	0	0	17138	1377	48	4	1188	4	USP10	16	84779261	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	54047644	84779261	5575492	80	67343										
GPS2	0	genome.wustl.edu	37	chr17	7217236	7217236	+	Frame_Shift_Del	DEL	G	G	-													0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tactctcaccgtaagcacttGgggtccaaacatttgtttgg							TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	17	7217236	7217236	G	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_del	c.469	p.Q157fs	0.996	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	199	0	0	139	22	13.5	-	-	-	-	7217236	G	-	7217236	7	5	779	1	0	1	0	1	0	0	0	0	6784	1357	47	0	538	0	GPS2	17	7217236	Frame_Shift_Del	DEL	G	TCGA-E2-A15I-01A-21D-A135-09		7217236	73977974	81	67344										
COX10	0	genome.wustl.edu	37	chr17	14110451	14110451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gttcttctgcagcctgtggcAcctgccgctgctgctgctgc	12	15	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	17	14110451	14110451	A	C	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	missense	c.1253	p.H418P	1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	37	0	0	5	14	73.68	-	-	-	C	14110451	A	C	14110451	3	2	779	1	0	0	0	0	1	0	0	0	3792	159	6	5	1279	5	COX10	17	14110451	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	6893215	14110451	67084759	82	67345										
PNMT	0	genome.wustl.edu	37	chr17	37826537	37826537	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gccctggtgcgtagtggctaCaaggtccgggacctccgcac	14	14	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	17	37826537	37826537	C	A	SNP	PNMT	ENST00000269582	human	ensembl	69_37n	1	known	nonsense	c.744	p.Y248*	0.069	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744	105	1	0.93	15	7	31.82	-	-	-	A	37826537	C	A	37826537	4	1	779	1	0	0	0	0	0	1	0	0	12233	489	17	4	754	4	PNMT	17	37826537	Nonsense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	23716086	37826537	43368673	83	67346										
LPO	0	genome.wustl.edu	37	chr17	56332273	56332273	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aactaaagagactcaaccctCagtgggatggagagaagctc	11	9	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	17	56332273	56332273	C	T	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	nonsense	c.1207	p.Q403*	0.377	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	165	0	0	137	18	11.61	-	-	-	T	56332273	C	T	56332273	4	4	779	1	0	0	0	0	0	1	0	0	8988	827	29	2	1237	2	LPO	17	56332273	Nonsense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	18505736	56332273	24862937	84	67347										
KCNJ2	0	genome.wustl.edu	37	chr17	68171472	68171472	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ctttcgtcctgtcatggctgTtttttggctgtgtgttttgg	12	7	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	17	68171472	68171472	T	G	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.292	p.F98V	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	199	0	0	130	19	12.75	-	-	-	G	68171472	T	G	68171472	3	3	779	1	0	0	0	0	1	0	0	0	8105	1725	60	5	294	5	KCNJ2	17	68171472	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	11839199	68171472	13023738	85	67348										
TNRC6C	0	genome.wustl.edu	37	chr17	76071307	76071307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cgccaagcccctcggctgccGcccgccaatctccaaagagt	9	19	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	17	76071307	76071307	G	C	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.2999	p.R1000P	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	38	0	0	45	29	38.16	-	-	-	C	76071307	G	C	76071307	3	2	779	1	0	0	0	0	1	0	0	0	16437	1087	38	3	3030	3	TNRC6C	17	76071307	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	7899835	76071307	5123903	86	67349										
SLC38A10	0	genome.wustl.edu	37	chr17	79220018	79220018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aatgctggtgccagtggctgCcacctccttcccaggttttt	10	13	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	17	79220018	79220018	C	G	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.2698	p.A900P	0.003	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	276	0	0	19	15	44.12	-	-	-	G	79220018	C	G	79220018	3	3	779	1	0	0	0	0	1	0	0	0	14691	739	26	4	665	4	SLC38A10	17	79220018	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	3148711	79220018	1975192	87	67350										
ABCA7	0	genome.wustl.edu	37	chr19	1053382	1053382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggtgcccggggcacggctggTggaggagctgccacacgagc	19	12	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	1053382	1053382	T	G	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	missense	c.3275	p.V1092G	0.997	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	45	0	0	8	11	57.89	-	-	-	G	1053382	T	G	1053382	3	3	779	1	0	0	0	0	1	0	0	0	37	1696	59	5	3365	5	ABCA7	19	1053382	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09		1053382	58075601	88	67351										
ATP8B3	0	genome.wustl.edu	37	chr19	1782989	1782989	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	acacctgcccctgtggctggTgcttcttcttccccaggaag	10	15	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	1782989	1782989	T	G	SNP	ATP8B3	ENST00000546207	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP8B3	HGNC	ENSG00000130270	44	0	0	50	49	49	-	-	-	G	1782989	T	G	1782989	1	3	779	0	1	0	0	0	0	0	0	0	1200	1711	59	5		5	ATP8B3	19	1782989	RNA	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	729607	1782989	57345994	89	67352										
TMPRSS9	0	genome.wustl.edu	37	chr19	2396400	2396400	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	attcagggctatcacgggggCgtcgaccaccccactgcgtg	13	14	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	2396400	2396400	C	T	SNP	TMPRSS9	ENST00000592650	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	11	0	0	10	6	37.5	-	-	-	T	2396400	C	T	2396400	1	4	779	0	1	0	0	0	0	0	0	0	16348	783	27	1		1	TMPRSS9	19	2396400	RNA	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	613411	2396400	56732583	90	67353										
GCDH	0	genome.wustl.edu	37	chr19	13002672	13002672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcccgagtttgactggcaggAcccgctggtgctggaggagc	16	11	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	13002672	13002672	A	G	SNP	GCDH	ENST00000222214	human	ensembl	69_37n	1	known	missense	c.155	p.D52G	1.000	superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607	51	0	0	26	22	44.9	-	-	-	G	13002672	A	G	13002672	3	3	779	1	0	0	0	0	1	0	0	0	6337	275	10	5	165	5	GCDH	19	13002672	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	10606272	13002672	46126311	91	67354										
NOTCH3	0	genome.wustl.edu	37	chr19	15276624	15276624	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gacaccctgggcatcggctgTgacagctgtgtgcaggggag	17	10	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	15276624	15276624	T	G	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.5641	p.T1881P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt-contain_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	65	0	0	15	19	55.88	-	-	-	G	15276624	T	G	15276624	3	3	779	1	0	0	0	0	1	0	0	0	10622	1696	59	5	1340	5	NOTCH3	19	15276624	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	2273952	15276624	43852359	92	67355										
NOTCH3	0	genome.wustl.edu	37	chr19	15291055	15291055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cacccgcctgacacagctgcTccagccgcacccctgcaaag	8	20	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	15291055	15291055	T	C	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.3155	p.E1052G	0.762	smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	162	0	0	10	15	60	-	-	-	C	15291055	T	C	15291055	3	2	779	1	0	0	0	0	1	0	0	0	10622	1551	54	5	3866	5	NOTCH3	19	15291055	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	14431	15291055	43837928	93	67356										
GMIP	0	genome.wustl.edu	37	chr19	19741085	19741085	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggggatacttcactggctggCggctgaagtggccacgagac	16	10	1	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	19741085	19741085	C	G	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	missense	c.2600	p.R867P	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	58	0	0	34	35	50.72	-	-	-	G	19741085	C	G	19741085	3	3	779	1	0	0	0	0	1	0	0	0	6543	768	27	3	316	3	GMIP	19	19741085	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	4450030	19741085	39387898	94	67357										
SHKBP1	0	genome.wustl.edu	37	chr19	41092756	41092756	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtcatcgtgcagcacccggaGactgtgggctcggggcctca	15	13	2	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	19	41092756	41092756	G	T	SNP	SHKBP1	ENST00000291842	human	ensembl	69_37n	1	known	missense	c.1242	p.E414D	1.000	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410	78	0	0	54	27	33.33	-	-	-	T	41092756	G	T	41092756	3	4	779	1	0	0	0	0	1	0	0	0	14373	933	33	2	1292	2	SHKBP1	19	41092756	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	21351671	41092756	18036227	95	67358										
NUMBL	0	genome.wustl.edu	37	chr19	41173889	41173889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgctgttgctgctgctgctgCtgctgctgttgctgttgctg	14	10	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	41173889	41173889	C	T	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	silent	c.1314	p.Q438	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	25	0	0	8	4	33.33	-	-	-	T	41173889	C	T	41173889	2	4	779	1	0	0	0	0	0	0	0	1	10825	796	28	4		4	NUMBL	19	41173889	Silent	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	81133	41173889	17955094	96	67359										
RABAC1	0	genome.wustl.edu	37	chr19	42463050	42463050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggatggtcgcgcggcgccgcTccagccactcccggcctgca	14	18	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	42463050	42463050	T	C	SNP	RABAC1	ENST00000222008	human	ensembl	69_37n	-1	known	missense	c.107	p.E36G	1.000	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	RABAC1	HGNC	ENSG00000105404	67	0	0	6	14	70	-	-	-	C	42463050	T	C	42463050	3	2	779	1	0	0	0	0	1	0	0	0	13043	1551	54	5	466	5	RABAC1	19	42463050	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	1289161	42463050	16665933	97	67360										
IGFL3	0	genome.wustl.edu	37	chr19	46627331	46627331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aagatggcatcatcataacaGcactgctctgaagggttgta	10	8	3	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	19	46627331	46627331	G	A	SNP	IGFL3	ENST00000341415	human	ensembl	69_37n	-1	known	silent	c.162	p.C54	0.022	NULL	NULL	-	no_errors	IGFL3	HGNC	ENSG00000188624	100	0	0	86	25	22.52	-	-	-	A	46627331	G	A	46627331	2	1	779	1	0	0	0	0	0	0	0	1	7642	963	34	4		4	IGFL3	19	46627331	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	4164281	46627331	12501652	98	67361										
IRF3	0	genome.wustl.edu	37	chr19	50165501	50165501	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgtctcccacttcggaccccAccagccgcaggccctccggg	10	20	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	50165501	50165501	A	C	SNP	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	missense	c.686	p.V229G	1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	75	0	0	26	13	33.33	-	-	-	C	50165501	A	C	50165501	3	2	779	1	0	0	0	0	1	0	0	0	7885	159	6	5	609	5	IRF3	19	50165501	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	3538170	50165501	8963482	99	67362										
MYBPC2	0	genome.wustl.edu	37	chr19	50957613	50957613	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ccaccaatgtacgatgggggGaagccagtcaccggtgagtg	15	10	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	50957613	50957613	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	silent	c.2001	p.G667	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	121	0	0	31	9	21.43	-	-	-	A	50957613	G	A	50957613	2	1	779	1	0	0	0	0	0	0	0	1	10084	1161	41	2		2	MYBPC2	19	50957613	Silent	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	792112	50957613	8171370	100	67363										
SIGLEC6	0	genome.wustl.edu	37	chr19	52023268	52023268	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gtggtacattgctgtggcagCcctagtaaccaatacactga	10	10	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	52023268	52023268	C	G	SNP	SIGLEC6	ENST00000474054	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	106	0	0	63	15	19.23	-	-	-	G	52023268	C	G	52023268	1	3	779	0	1	0	0	0	0	0	0	0	14401	754	26	4		4	SIGLEC6	19	52023268	RNA	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	1065655	52023268	7105715	101	67364										
SIGLEC5	0	genome.wustl.edu	37	chr19	52131147	52131147	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cgggtgctgagcgcggcaggTgaagcctccttcttctgcag	15	12	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	19	52131147	52131147	T	G	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	missense	c.937	p.T313P	0.885	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	77	0	0	66	29	30.21	-	-	-	G	52131147	T	G	52131147	3	3	779	1	0	0	0	0	1	0	0	0	14400	1696	59	5	738	5	SIGLEC5	19	52131147	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	107879	52131147	6997836	102	67365										
RRBP1	0	genome.wustl.edu	37	chr20	17640580	17640580	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgagtagtgccagtggctggTgtgttgcccttggcacccac	14	11	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	20	17640580	17640580	T	G	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	silent	c.573	p.T191	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	72	0	0	25	74	74	-	-	-	G	17640580	T	G	17640580	2	3	779	1	0	0	0	0	0	0	0	1	13764	1711	59	5		5	RRBP1	20	17640580	Silent	SNP	T	TCGA-E2-A15I-01A-21D-A135-09		17640580	45384940	103	67366										
SRC	0	genome.wustl.edu	37	chr20	36022255	36022255	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gggcaccgggcttgtggctgAcggctcccttctcctttcct	12	15	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	20	36022255	36022255	A	G	SNP	SRC	ENST00000489153	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	99	0	0	21	21	48.84	-	-	-	G	36022255	A	G	36022255	1	3	779	0	1	0	0	0	0	0	0	0	15225	290	10	5		5	SRC	20	36022255	RNA	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	18381675	36022255	27003265	104	67367										
WDR4	0	genome.wustl.edu	37	chr21	44299550	44299550	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	aggtggccaggaatcggctgCcgccccgcaccaccaacgtc	12	17	0	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	21	44299550	44299550	C	G	SNP	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	missense	c.56	p.G19A	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	109	0	0	50	22	30.56	-	-	-	G	44299550	C	G	44299550	3	3	779	1	0	0	0	0	1	0	0	0	17390	739	26	4	1226	4	WDR4	21	44299550	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09		44299550	3830345	105	67368										
RRP1	0	genome.wustl.edu	37	chr21	45223490	45223490	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gaggcgcgggcagaggctggTgagcagccaggcacagctga	19	10	0	3			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	21	45223490	45223490	T	G	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	1	known	silent	c.1221	p.G407	0.000	NULL	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	60	0	0	14	9	39.13	-	-	-	G	45223490	T	G	45223490	2	3	779	1	0	0	0	0	0	0	0	1	13771	1683	59	5		5	RRP1	21	45223490	Silent	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	923940	45223490	2906405	106	67369										
C22orf13	0	genome.wustl.edu	37	chr22	24939827	24939827	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cacggtcggcataggctgggTtgttgtagaagatgcagcca	15	8	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	24939827	24939827	T	G	SNP	C22orf13	ENST00000407471	human	ensembl	69_37n	-1	known	missense	c.611	p.N204T	1.000	pfam_Guanylyl_cyclase	pfam_Guanylyl_cyclase	-	no_errors	C22orf13	HGNC	ENSG00000138867	50	0	0	33	20	36.36	-	-	-	G	24939827	T	G	24939827	3	3	779	1	0	0	0	0	1	0	0	0	2155	1725	60	5	119	5	C22orf13	22	24939827	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09		24939827	26364739	107	67370										
NCF4	0	genome.wustl.edu	37	chr22	37260160	37260160	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tcgaggagaagagaggcttcAccagccactttgtaagacag	12	9	1	3			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	37260160	37260160	A	C	SNP	NCF4	ENST00000397147	human	ensembl	69_37n	1	known	missense	c.106	p.T36P	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF4	HGNC	ENSG00000100365	58	0	0	19	46	70.77	-	-	-	C	37260160	A	C	37260160	3	2	779	1	0	0	0	0	1	0	0	0	10290	159	6	5	112	5	NCF4	22	37260160	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	12320333	37260160	14044406	108	67371										
PICK1	0	genome.wustl.edu	37	chr22	38465067	38465067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gaaagtcaagcaccggctggTggagaacatgagttcaggga	15	7	2	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	38465067	38465067	T	G	SNP	PICK1	ENST00000356976	human	ensembl	69_37n	1	known	missense	c.377	p.V126G	1.000	pfam_Arfaptin_homology_dom	pfam_Arfaptin_homology_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_Arfaptin_homology_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151	101	0	0	30	25	45.45	-	-	-	G	38465067	T	G	38465067	3	3	779	1	0	0	0	0	1	0	0	0	11955	1696	59	5	395	5	PICK1	22	38465067	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	1204907	38465067	12839499	109	67372										
APOBEC3H	0	genome.wustl.edu	37	chr22	39498014	39498014	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gaggagctagataaaaacagTcgagccataaagcgacggct	12	8	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	39498014	39498014	T	G	SNP	APOBEC3H	ENST00000442487	human	ensembl	69_37n	1	known	missense	c.510	p.S170R	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3H	HGNC	ENSG00000100298	129	0	0	56	13	17.81	-	-	-	G	39498014	T	G	39498014	3	3	779	1	0	0	0	0	1	0	0	0	797	1664	58	5	520	5	APOBEC3H	22	39498014	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	1032947	39498014	11806552	110	67373										
SREBF2	0	genome.wustl.edu	37	chr22	42276902	42276902	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttccagtgccggcgggccacGccagccactgaggcaggctt	14	15	0	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	42276902	42276902	G	C	SNP	SREBF2	ENST00000424354	human	ensembl	69_37n	1	known	missense	c.2044	p.A682P	0.003	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SREBF2	HGNC	ENSG00000198911	82	0	0	1	6	85.71	-	-	-	C	42276902	G	C	42276902	3	2	779	1	0	0	0	0	1	0	0	0	15233	1074	38	3	1982	3	SREBF2	22	42276902	Missense_Mutation	SNP	G	TCGA-E2-A15I-01A-21D-A135-09	2778888	42276902	9027664	111	67374										
PARVG	0	genome.wustl.edu	37	chr22	44585003	44585003	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cctgcctccagagaggctggCggcgctcaagctggaagcag	15	13	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	44585003	44585003	C	G	SNP	PARVG	ENST00000415224	human	ensembl	69_37n	1	known	missense	c.257	p.A86G	0.189	pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVG	HGNC	ENSG00000138964	65	0	0	22	33	60	-	-	-	G	44585003	C	G	44585003	3	3	779	1	0	0	0	0	1	0	0	0	11543	768	27	3	271	3	PARVG	22	44585003	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	2308101	44585003	6719563	112	67375										
TTC38	0	genome.wustl.edu	37	chr22	46669905	46669905	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	caatggtggagatttcaagaAcccagccgctgacaaggcgg	13	10	1	3			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	22	46669905	46669905	A	C	SNP	TTC38	ENST00000445282	human	ensembl	69_37n	1	known	missense	c.304	p.T102P	0.000	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	42	0	0	26	19	42.22	-	-	-	C	46669905	A	C	46669905	3	2	779	1	0	0	0	0	1	0	0	0	16803	43	2	5	318	5	TTC38	22	46669905	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	2084902	46669905	4634661	113	67376										
PLCXD1	0	genome.wustl.edu	37	chrX	208197	208197	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ggaaatctcggagtggctggAgcggcatccacgcgaggtgg	18	9	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	208197	208197	A	G	SNP	PLCXD1	ENST00000381657	human	ensembl	69_37n	1	known	missense	c.425	p.E142G	0.541	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378	102	1	0.97	70	108	60.67	-	-	-	G	208197	A	G	208197	3	3	779	1	0	0	0	0	1	0	0	0	12115	304	11	5	439	5	PLCXD1	23	208197	Missense_Mutation	SNP	A	TCGA-E2-A15I-01A-21D-A135-09		208197	155062363	114	67377										
ASB9	0	genome.wustl.edu	37	chrX	15262576	15262576	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ttttaaaattctagtggctaCaacactcaataatgttttca	4	7	3	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	15262576	15262576	C	A	SNP	ASB9	ENST00000473862	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB9	HGNC	ENSG00000102048	70	0	0	98	89	47.59	-	-	-	A	15262576	C	A	15262576	1	1	779	0	1	0	0	0	0	0	0	0	1034	493	17	4		4	ASB9	23	15262576	RNA	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	15054379	15262576	140007984	115	67378										
NHS	0	genome.wustl.edu	37	chrX	17705940	17705940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	ccagcagcgcaacatcttccTcccagccacaaggccaccct	6	20	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	17705940	17705940	T	C	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.644	p.L215P	0.994	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	249	2	0.79	61	37	36.63	-	-	-	C	17705940	T	C	17705940	3	2	779	1	0	0	0	0	1	0	0	0	10483	1551	54	5	688	5	NHS	23	17705940	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	2443364	17705940	137564620	116	67379										
SLC35A2	0	genome.wustl.edu	37	chrX	48762371	48762371	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cctggttgagcaccacgcccCagacagcaggtgtgtaccca	11	15	0	2			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	X	48762371	48762371	C	A	SNP	SLC35A2	ENST00000452555	human	ensembl	69_37n	-1	known	missense	c.899	p.W300L	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100	63	0	0	53	32	37.65	-	-	-	A	48762371	C	A	48762371	3	1	779	1	0	0	0	0	1	0	0	0	14660	595	21	4	539	4	SLC35A2	23	48762371	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	31056431	48762371	106508189	117	67380										
SYP	0	genome.wustl.edu	37	chrX	49050648	49050648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgggccctttgttattctctCggtacttgttctgcaggaag	11	9	2	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	X	49050648	49050648	C	T	SNP	SYP	ENST00000263233	human	ensembl	69_37n	-1	known	missense	c.398	p.R133Q	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYP	HGNC	ENSG00000102003	379	1	0.26	239	101	29.62	-	-	-	T	49050648	C	T	49050648	3	4	779	1	0	0	0	0	1	0	0	0	15553	884	31	1	555	1	SYP	23	49050648	Missense_Mutation	SNP	C	TCGA-E2-A15I-01A-21D-A135-09	288277	49050648	106219912	118	67381										
GUCY2F	0	genome.wustl.edu	37	chrX	108696999	108696999	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	tgctgaaccaggctggcagcAccagcctgtccattttcttt	9	13	1	1			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	108696999	108696999	A	C	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	silent	c.1122	p.G374	0.999	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	61	0	0	103	69	39.66	-	-	-	C	108696999	A	C	108696999	2	2	779	1	0	0	0	0	0	0	0	1	6949	146	6	5		5	GUCY2F	23	108696999	Silent	SNP	A	TCGA-E2-A15I-01A-21D-A135-09	59646351	108696999	46573561	119	67382										
HCFC1	0	genome.wustl.edu	37	chrX	153220423	153220423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	gatccggatcacggcaggggTgccagctgcacaggcccgac	15	14	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	153220423	153220423	T	G	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.3427	p.T1143P	0.004	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	110	1	0.89	57	48	44.04	-	-	-	G	153220423	T	G	153220423	3	3	779	1	0	0	0	0	1	0	0	0	7042	1696	59	5	2720	5	HCFC1	23	153220423	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	44523424	153220423	2050137	120	67383										
HCFC1	0	genome.wustl.edu	37	chrX	153220495	153220495	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0330578512396694	4	0.79133532817198	1.19057461761058	0	2.4406779661017	0.0606060606060606	0.423376623376623	0	cgacatggctgtagtggcagTgttggtggtgcccgtctcgt	16	9	1	0			TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-11A-32D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	cc8284b1-f404-4283-b41b-006f9402d472	X	153220495	153220495	T	G	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.3355	p.T1119P	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	175	0	0	108	51	31.48	-	-	-	G	153220495	T	G	153220495	3	3	779	1	0	0	0	0	1	0	0	0	7042	1696	59	5	2792	5	HCFC1	23	153220495	Missense_Mutation	SNP	T	TCGA-E2-A15I-01A-21D-A135-09	72	153220495	2050065	121	67384										
CHD5	0	genome.wustl.edu	37	chr1	6202309	6202309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tgaccacgtagaagtcgggcGcccacatctcaaactcgcgt	10	14	1	2			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	6202309	6202309	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.2315	p.A772V	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	124	0	0	51	42	45.16	-	-	-	A	6202309	G	A	6202309	3	1	780	1	0	0	0	0	1	0	0	0	3357	1087	38	1	3657	1	CHD5	1	6202309	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		6202309	243048312	1	67385										
HNRNPR	0	genome.wustl.edu	37	chr1	23637492	23637492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gccatatccacctctcccccCaccacgaccccgacctctaa	3	23	2	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	23637492	23637492	C	A	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.1366	p.G456W	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	230	0	0	128	128	50	-	-	-	A	23637492	C	A	23637492	3	1	780	1	0	0	0	0	1	0	0	0	7323	594	21	4	548	4	HNRNPR	1	23637492	Missense_Mutation	SNP	C	TCGA-E2-A15J-01A-11D-A12Q-09	17435183	23637492	225613129	2	67386										
GPATCH2	0	genome.wustl.edu	37	chr1	217783712	217783712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	taatattctttgaagacattCcatgaaggcgactgagtcta	8	7	2	4			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	217783712	217783712	C	A	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	missense	c.1049	p.G350V	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	167	0	0	117	226	65.89	-	-	-	A	217783712	C	A	217783712	3	1	780	1	0	0	0	0	1	0	0	0	6641	855	30	2	561	2	GPATCH2	1	217783712	Missense_Mutation	SNP	C	TCGA-E2-A15J-01A-11D-A12Q-09	194146220	217783712	31466909	3	67387										
INSIG2	0	genome.wustl.edu	37	chr2	118860893	118860893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tgttggtataaatcatgccaGtgctgtatcctttactctgt	8	8	2	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	2	118860893	118860893	G	A	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	1	known	missense	c.365	p.S122N	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	320	0	0	199	126	38.53	-	-	-	A	118860893	G	A	118860893	3	1	780	1	0	0	0	0	1	0	0	0	7820	1029	36	4	371	4	INSIG2	2	118860893	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		118860893	124338480	4	67388										
CNTN6	0	genome.wustl.edu	37	chr3	1414040	1414040	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tgttacagttggcgagagtaTagtgctaccatgccaggtgt	13	7	0	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	1414040	1414040	T	C	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.1550	p.I517T	0.943	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	229	0	0	166	112	40.14	-	-	-	C	1414040	T	C	1414040	3	2	780	1	0	0	0	0	1	0	0	0	3675	1406	49	5	1596	5	CNTN6	3	1414040	Missense_Mutation	SNP	T	TCGA-E2-A15J-01A-11D-A12Q-09		1414040	196608390	5	67389										
VGLL4	0	genome.wustl.edu	37	chr3	11684952	11684952	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tattgttgttcatcttgtccAagtactgatagttcaacagg	8	7	3	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	11684952	11684952	A	T	SNP	VGLL4	ENST00000430365	human	ensembl	69_37n	-1	known	nonsense	c.41	p.L14*	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560	181	1	0.55	92	90	49.45	-	-	-	T	11684952	A	T	11684952	4	4	780	1	0	0	0	0	0	1	0	0	17258	131	5	5	893	5	VGLL4	3	11684952	Nonsense_Mutation	SNP	A	TCGA-E2-A15J-01A-11D-A12Q-09	10270912	11684952	186337478	6	67390										
COL8A1	0	genome.wustl.edu	37	chr3	99513227	99513227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tccaggagttggaaagccagGtatgcctggaatgccaggga	15	8	0	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	99513227	99513227	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	missense	c.482	p.G161V	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	131	1	0.76	97	63	39.38	-	-	-	T	99513227	G	T	99513227	3	4	780	1	0	0	0	0	1	0	0	0	3735	1261	44	4	488	4	COL8A1	3	99513227	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09	87828275	99513227	98509203	7	67391										
RIMS2	0	genome.wustl.edu	37	chr8	104948831	104948831	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	agaaaacattggaacccaaaTggaaccaaacattcatttat	5	8	1	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	8	104948831	104948831	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2428	p.W810G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	129	0	0	189	75	28.2	-	-	-	G	104948831	T	G	104948831	3	3	780	1	0	0	0	0	1	0	0	0	13454	1464	51	5	2604	5	RIMS2	8	104948831	Missense_Mutation	SNP	T	TCGA-E2-A15J-01A-11D-A12Q-09		104948831	41415191	8	67392										
VAV2	0	genome.wustl.edu	37	chr9	136634607	136634607	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gaggactgagaaaagaaaagTtgtaggaagcacaggaagct	14	4	0	2			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	9	136634607	136634607	T	C	SNP	VAV2	ENST00000371850	human	ensembl	69_37n	-1	known	missense	c.2366	p.N789S	1.000	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293	133	0	0	64	53	45.3	-	-	-	C	136634607	T	C	136634607	3	2	780	1	0	0	0	0	1	0	0	0	17229	1725	60	5	282	5	VAV2	9	136634607	Missense_Mutation	SNP	T	TCGA-E2-A15J-01A-11D-A12Q-09		136634607	4578824	9	67393										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	149	0	0	80	41	33.61	-	-	-	-	8111434	CA	-	8111433	8	5	780	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-E2-A15J-01A-11D-A12Q-09		8111433	127423314	10	67394										
BET1L	0	genome.wustl.edu	37	chr11	205996	205996	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ggccaggctgtcagccattcGcttgttctcccggtctagaa	11	13	3	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	11	205996	205996	G	A	SNP	BET1L	ENST00000382762	human	ensembl	69_37n	-1	known	nonsense	c.67	p.R23*	1.000	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	BET1L	HGNC	ENSG00000177951	137	0	0	57	40	40.4	-	-	-	A	205996	G	A	205996	4	1	780	1	0	0	0	0	0	1	0	0	1413	1095	38	1	417	1	BET1L	11	205996	Nonsense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		205996	134800520	11	67395										
DCHS1	0	genome.wustl.edu	37	chr11	6645350	6645350	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ttgccactgatgatgctgtaGtccacagcggcatggctgcg	13	11	0	2			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	11	6645350	6645350	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.7557	p.D2519E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	43	0	0	18	16	47.06	-	-	-	C	6645350	G	C	6645350	3	2	780	1	0	0	0	0	1	0	0	0	4318	1020	36	4	2343	4	DCHS1	11	6645350	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09	6439354	6645350	128361166	12	67396										
FOXJ2	0	genome.wustl.edu	37	chr12	8203193	8203193	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gtacccaatccccacccaggActcagcaggatacaatcgcc	7	17	1	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	12	8203193	8203193	A	G	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	1	known	missense	c.1613	p.D538G	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	226	0	0	126	100	44.05	-	-	-	G	8203193	A	G	8203193	3	3	780	1	0	0	0	0	1	0	0	0	6060	275	10	5	1647	5	FOXJ2	12	8203193	Missense_Mutation	SNP	A	TCGA-E2-A15J-01A-11D-A12Q-09		8203193	125648702	13	67397										
LRP1	0	genome.wustl.edu	37	chr12	57548459	57548459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ggactatgagggcaagggccGccagaccatcatccagggca	14	12	1	2			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	12	57548459	57548459	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.1202	p.R401H	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	61	0	0	48	30	37.5	-	-	-	A	57548459	G	A	57548459	3	1	780	1	0	0	0	0	1	0	0	0	9017	1087	38	1	1232	1	LRP1	12	57548459	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09	49345266	57548459	76303436	14	67398										
ASB2	0	genome.wustl.edu	37	chr14	94417514	94417514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	tcgtgcagagcggtccagccGcggttgcagcggtggttggt	18	10	0	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	14	94417514	94417514	G	A	SNP	ASB2	ENST00000315988	human	ensembl	69_37n	-1	known	silent	c.567	p.R189	0.001	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628	78	0	0	32	39	54.93	-	-	-	A	94417514	G	A	94417514	2	1	780	1	0	0	0	0	0	0	0	1	1027	1074	38	1		1	ASB2	14	94417514	Silent	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		94417514	12932026	15	67399										
FEM1B	0	genome.wustl.edu	37	chr15	68582869	68582869	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	cttcttcgatttgctcaagtTttctcacaaatgatacattt	4	9	3	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	15	68582869	68582869	T	A	SNP	FEM1B	ENST00000306917	human	ensembl	69_37n	1	known	silent	c.1173	p.V391	0.986	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	FEM1B	HGNC	ENSG00000169018	142	0	0	103	80	43.72	-	-	-	A	68582869	T	A	68582869	2	1	780	1	0	0	0	0	0	0	0	1	5856	1828	64	5		5	FEM1B	15	68582869	Silent	SNP	T	TCGA-E2-A15J-01A-11D-A12Q-09		68582869	33948523	16	67400										
PYCARD	0	genome.wustl.edu	37	chr16	31213061	31213061	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ggcccgcactgcctggtactGctcatccgtcaggaccttcc	10	17	2	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	16	31213061	31213061	G	A	SNP	PYCARD	ENST00000247470	human	ensembl	69_37n	-1	known	nonsense	c.433	p.Q145*	0.973	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,pfam_DAPIN,superfamily_DEATH-like,pfscan_CARD,pfscan_DAPIN	-	no_errors	PYCARD	HGNC	ENSG00000103490	132	0	0	47	78	61.9	-	-	-	A	31213061	G	A	31213061	4	1	780	1	0	0	0	0	0	1	0	0	12937	1328	46	4	158	4	PYCARD	16	31213061	Nonsense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		31213061	59141692	17	67401										
AKAP1	0	genome.wustl.edu	37	chr17	55183677	55183677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gagctggcaaaggacgatgcGgcgccagcacccccagtcgc	14	15	0	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	17	55183677	55183677	G	A	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	1	known	silent	c.852	p.A284	0.001	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	205	0	0	138	106	43.09	-	-	-	A	55183677	G	A	55183677	2	1	780	1	0	0	0	0	0	0	0	1	445	1103	39	1		1	AKAP1	17	55183677	Silent	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09		55183677	26011533	18	67402										
USP36	0	genome.wustl.edu	37	chr17	76803588	76803588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gggagagtttgggggaagggGaccccgagggcagctttgga	21	6	0	1			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	17	76803588	76803588	G	A	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	missense	c.1538	p.S513F	0.871	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	173	1	0.57	112	69	37.91	-	-	-	A	76803588	G	A	76803588	3	1	780	1	0	0	0	0	1	0	0	0	17164	1174	41	2	1861	2	USP36	17	76803588	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09	21619911	76803588	4391622	19	67403										
JAK3	0	genome.wustl.edu	37	chr19	17945965	17945965	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	ggcgggctcccatcagccccCtcccgagccaggagcacctt	11	19	1	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	19	17945965	17945965	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	silent	c.1974	p.E658	0.999	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	49	0	0	21	13	38.24	-	-	-	T	17945965	C	T	17945965	2	4	780	1	0	0	0	0	0	0	0	1	7993	680	24	4		4	JAK3	19	17945965	Silent	SNP	C	TCGA-E2-A15J-01A-11D-A12Q-09		17945965	41183018	20	67404										
LTBP4	0	genome.wustl.edu	37	chr19	41113324	41113324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	gcttccgcgtgctccgcgacGgcggctgttcgctgcccatt	13	16	0	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	19	41113324	41113324	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.1246	p.G416S	0.988	superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	52	0	0	26	15	35.71	-	-	-	A	41113324	G	A	41113324	3	1	780	1	0	0	0	0	1	0	0	0	9142	1116	39	1	1577	1	LTBP4	19	41113324	Missense_Mutation	SNP	G	TCGA-E2-A15J-01A-11D-A12Q-09	23167359	41113324	18015659	21	67405										
ADA	0	genome.wustl.edu	37	chr20	43255195	43255195	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	acgccctctttggccttcatCtctacaaactcataggcgat	6	14	4	0			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	20	43255195	43255195	C	T	SNP	ADA	ENST00000372874	human	ensembl	69_37n	-1	known	silent	c.264	p.E88	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839	186	0	0	99	52	34.44	-	-	-	T	43255195	C	T	43255195	2	4	780	1	0	0	0	0	0	0	0	1	230	912	32	2		2	ADA	20	43255195	Silent	SNP	C	TCGA-E2-A15J-01A-11D-A12Q-09		43255195	19770325	22	67406										
RAB9B	0	genome.wustl.edu	37	chrX	103080672	103080672	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0434782608695652	1	0.95573563148215	0.848958333333333	0	0.926136363636364	1	1	0	acttttcccaactccaccatCacccaagagaatgaccttta	3	15	1	2			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	X	103080672	103080672	C	A	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.43	p.D15Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	152	0	0	116	72	38.3	-	-	-	A	103080672	C	A	103080672	3	1	780	1	0	0	0	0	1	0	0	0	13042	826	29	2	566	2	RAB9B	23	103080672	Missense_Mutation	SNP	C	TCGA-E2-A15J-01A-11D-A12Q-09		103080672	52189888	23	67407										
IPO13	0	genome.wustl.edu	37	chr1	44426575	44426575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gcgctatctttgagaagtctGttaagacgctgctggatgac	12	8	2	3			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	44426575	44426575	G	T	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	1	known	missense	c.2137	p.V713F	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	89	0	0	33	18	35.29	-	-	-	T	44426575	G	T	44426575	3	4	781	1	0	0	0	0	1	0	0	0	7848	1377	48	4	2187	4	IPO13	1	44426575	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		44426575	204824046	1	67408										
PIK3R3	0	genome.wustl.edu	37	chr1	46512262	46512262	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	taattcccagccagacattcAggcgtttctgtctcactcct	6	14	3	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	46512262	46512262	A	C	SNP	PIK3R3	ENST00000540385	human	ensembl	69_37n	-1	known	missense	c.1115	p.L372R	1.000	prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461	351	3	0.85	114	53	31.74	-	-	-	C	46512262	A	C	46512262	3	2	781	1	0	0	0	0	1	0	0	0	11994	188	7	5	420	5	PIK3R3	1	46512262	Missense_Mutation	SNP	A	TCGA-E2-A15K-01A-11D-A12Q-09	2085687	46512262	202738359	2	67409										
SLC16A1	0	genome.wustl.edu	37	chr1	113456766	113456766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agtatgtgtatttgtagtctCcatacatgtcattgagccga	9	7	2	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	113456766	113456766	C	T	SNP	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	missense	c.1250	p.G417E	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	145	1	0.68	55	21	27.63	-	-	-	T	113456766	C	T	113456766	3	4	781	1	0	0	0	0	1	0	0	0	14491	855	30	2	256	2	SLC16A1	1	113456766	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	66944504	113456766	135793855	3	67410										
FMN2	0	genome.wustl.edu	37	chr1	240370374	240370374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	cccacggaagagggcggggtGctgacactgcctcctgtgga	16	12	0	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	240370374	240370374	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.2262	p.V754	0.000	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	48	0	0	48	9	15.79	-	-	-	A	240370374	G	A	240370374	2	1	781	1	0	0	0	0	0	0	0	1	5996	1306	46	4		4	FMN2	1	240370374	Silent	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09	126913608	240370374	8880247	4	67411										
ATAD2B	0	genome.wustl.edu	37	chr2	24118722	24118722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	ttgataagttccattcctctCgctgaccagtacttcgtgat	7	11	1	3			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	2	24118722	24118722	C	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.335	p.R112L	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	308	1	0.32	131	53	28.65	-	-	-	A	24118722	C	A	24118722	3	1	781	1	0	0	0	0	1	0	0	0	1076	884	31	3	4149	3	ATAD2B	2	24118722	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		24118722	219080651	5	67412										
FN1	0	genome.wustl.edu	37	chr2	216288147	216288147	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	cacaccacttcatgttgtctCttctgccctcagaagtgcaa	6	14	4	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	2	216288147	216288147	C	A	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.1319	p.R440I	0.999	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	261	0	0	85	65	43.33	-	-	-	A	216288147	C	A	216288147	3	1	781	1	0	0	0	0	1	0	0	0	6008	913	32	2	6299	2	FN1	2	216288147	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	192169425	216288147	26911226	6	67413										
CRTAP	0	genome.wustl.edu	37	chr3	33175699	33175699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agttcagttctttaatgtgaCcacactccagaaggagctgt	9	9	2	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	33175699	33175699	C	T	SNP	CRTAP	ENST00000320954	human	ensembl	69_37n	1	known	missense	c.1094	p.T365I	1.000	NULL	NULL	-	no_errors	CRTAP	HGNC	ENSG00000170275	425	3	0.7	146	76	34.08	-	-	-	T	33175699	C	T	33175699	3	4	781	1	0	0	0	0	1	0	0	0	3928	507	18	4	1116	4	CRTAP	3	33175699	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		33175699	164846731	7	67414										
TRAK1	0	genome.wustl.edu	37	chr3	42230525	42230525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	caggttgaagaggaatgagtCgtcctcctcagtccagaatt	11	9	1	4			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	3	42230525	42230525	C	T	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	missense	c.425	p.S142L	0.993	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	182	1	0.55	65	33	33.67	-	-	-	T	42230525	C	T	42230525	3	4	781	1	0	0	0	0	1	0	0	0	16545	893	31	1	737	1	TRAK1	3	42230525	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	9054826	42230525	155791905	8	67415										
MAGI1	0	genome.wustl.edu	37	chr3	65346921	65346921	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gcttcagaaacagacgaactCtgcggccaccattcttaatc	7	13	3	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	65346921	65346921	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.3587	p.R1196K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	271	1	0.37	100	51	33.55	-	-	-	T	65346921	C	T	65346921	3	4	781	1	0	0	0	0	1	0	0	0	9261	913	32	2	952	2	MAGI1	3	65346921	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	23116396	65346921	132675509	9	67416										
NAALADL2	0	genome.wustl.edu	37	chr3	175189546	175189546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	cttcagcaactggtagtagaGgtaagacaaaccactattgt	9	8	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	175189546	175189546	G	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.1653	p.E551D	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	225	1	0.44	66	29	30.53	-	-	-	T	175189546	G	T	175189546	3	4	781	1	0	0	0	0	1	0	0	0	10202	1014	35	4	1687	4	NAALADL2	3	175189546	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09	109842625	175189546	22832884	10	67417										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	203	1	0.49	71	39	35.14	-	-	-	G	178952085	A	G	178952085	3	3	781	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A15K-01A-11D-A12Q-09	3762539	178952085	19070345	11	67418										
DNAH5	0	genome.wustl.edu	37	chr5	13759060	13759060	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tgcagatcctgcatggccagGagatggcgattctcttgcac	12	11	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	5	13759060	13759060	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	silent	c.10314	p.L3438	0.005	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	95	0	0	40	28	41.18	-	-	-	A	13759060	G	A	13759060	2	1	781	1	0	0	0	0	0	0	0	1	4640	1161	41	2		2	DNAH5	5	13759060	Silent	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		13759060	167156200	12	67419										
CCNB1	0	genome.wustl.edu	37	chr5	68470891	68470891	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agctttaaactttggtctggGtcggcctctacctttgcact	9	11	2	0			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	5	68470891	68470891	G	T	SNP	CCNB1	ENST00000256442	human	ensembl	69_37n	1	known	missense	c.893	p.G298V	0.999	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNB1	HGNC	ENSG00000134057	230	2	0.86	74	44	37.29	-	-	-	T	68470891	G	T	68470891	3	4	781	1	0	0	0	0	1	0	0	0	2940	1261	44	4	915	4	CCNB1	5	68470891	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09	54711831	68470891	112444369	13	67420										
L3MBTL3	0	genome.wustl.edu	37	chr6	130407393	130407393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	acacagatgatcaccgggtaAaagtaagtgttctgtgtggg	13	6	2	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	6	130407393	130407393	A	G	SNP	L3MBTL3	ENST00000361794	human	ensembl	69_37n	1	known	missense	c.1516	p.K506E	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945	284	0	0	102	76	42.7	-	-	-	G	130407393	A	G	130407393	3	3	781	1	0	0	0	0	1	0	0	0	8647	15	1	5	1570	5	L3MBTL3	6	130407393	Missense_Mutation	SNP	A	TCGA-E2-A15K-01A-11D-A12Q-09		130407393	40707674	14	67421										
PIWIL2	0	genome.wustl.edu	37	chr8	22146119	22146120	+	Frame_Shift_Ins	INS	-	-	A													0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agcattaagattcagatgacINSaaagatcctggagccctgct							TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	8	22146119	22146120	-	A	INS	PIWIL2	ENST00000356766	human	ensembl	69_37n	1	known	frame_shift_ins	c.926_927	p.I311fs	1.000:0.988	superfamily_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	300	2	0.66	54	46	46	-	-	-	A	22146120	-	A	22146119	7	5	781	1	0	1	1	0	0	0	0	0	12032	478	17	0	952	0	PIWIL2	8	22146119	Frame_Shift_Ins	INS	-	TCGA-E2-A15K-01A-11D-A12Q-09		22146119	124217903	15	67422										
CTNNAL1	0	genome.wustl.edu	37	chr9	111735100	111735100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gatctgctgccagctgtgtcGctgtactatgaagctgcaga	12	10	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	9	111735100	111735100	G	T	SNP	CTNNAL1	ENST00000325551	human	ensembl	69_37n	-1	known	missense	c.1202	p.A401E	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	84	0	0	31	26	45.61	-	-	-	T	111735100	G	T	111735100	3	4	781	1	0	0	0	0	1	0	0	0	4047	1087	38	3	1046	3	CTNNAL1	9	111735100	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		111735100	29478331	16	67423										
FGFR2	0	genome.wustl.edu	37	chr10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tgtgtgcaggctccaagaagAtttatgatattcttgtgttt	10	5	1	3			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	10	123258034	123258034	A	T	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1650	p.N550K	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	456	0	0	156	84	35	-	-	-	T	123258034	A	T	123258034	3	4	781	1	0	0	0	0	1	0	0	0	5912	330	12	5	950	5	FGFR2	10	123258034	Missense_Mutation	SNP	A	TCGA-E2-A15K-01A-11D-A12Q-09		123258034	12276713	17	67424										
OR51E2	0	genome.wustl.edu	37	chr11	4703745	4703745	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	ataaggccaggtcaatggctGcaagcatgcagagaaagagg	14	7	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	11	4703745	4703745	G	C	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.197	p.A66G	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	132	0	0	44	19	30.16	-	-	-	C	4703745	G	C	4703745	3	2	781	1	0	0	0	0	1	0	0	0	11168	1319	46	4	769	4	OR51E2	11	4703745	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		4703745	130302771	18	67425										
AMICA1	0	genome.wustl.edu	37	chr11	118081378	118081378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agtgtacgcggttctggaagCgcccaataggcacactgaga	13	10	1	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	11	118081378	118081378	C	T	SNP	AMICA1	ENST00000356289	human	ensembl	69_37n	-1	known	missense	c.248	p.R83H	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	AMICA1	HGNC	ENSG00000160593	138	0	0	25	22	46.81	-	-	-	T	118081378	C	T	118081378	3	4	781	1	0	0	0	0	1	0	0	0	574	768	27	1	964	1	AMICA1	11	118081378	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	113377633	118081378	16925138	19	67426										
OR8D1	0	genome.wustl.edu	37	chr11	124180566	124180566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tactgtgaccacatagattcCcaggaacaggaggaagaggg	13	8	0	3			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	11	124180566	124180566	C	T	SNP	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	missense	c.97	p.G33R	0.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	235	0	0	20	28	58.33	-	-	-	T	124180566	C	T	124180566	3	4	781	1	0	0	0	0	1	0	0	0	11304	632	22	4	832	4	OR8D1	11	124180566	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	6099188	124180566	10825950	20	67427										
KRT82	0	genome.wustl.edu	37	chr12	52797575	52797575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	acacacagtccagctgccgcCgaagggcgctgatatagccc	11	15	0	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	52797575	52797575	C	T	SNP	KRT82	ENST00000257974	human	ensembl	69_37n	-1	known	missense	c.530	p.R177Q	1.000	pfam_F	pfam_F,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850	21	0	0	9	5	35.71	-	-	-	T	52797575	C	T	52797575	3	4	781	1	0	0	0	0	1	0	0	0	8549	652	23	1	1043	1	KRT82	12	52797575	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		52797575	81054320	21	67428										
GCN1L1	0	genome.wustl.edu	37	chr12	120602272	120602272	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tgccaggtgcggctcaggagCaccgccaccagagcccggtg	15	15	1	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	120602272	120602272	C	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	silent	c.1716	p.V572	0.963	pfam_DUF3554,superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	38	0	0	27	18	40	-	-	-	A	120602272	C	A	120602272	2	1	781	1	0	0	0	0	0	0	0	1	6349	697	25	4		4	GCN1L1	12	120602272	Silent	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	67804697	120602272	13249623	22	67429										
UBC	0	genome.wustl.edu	37	chr12	125396731	125396731	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	aagatctgcatcccacctctAagacggagcaccaggtgcag	10	13	2	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	12	125396731	125396731	A	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	0.760	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	20	0	0	10	3	23.08	-	-	-	G	125396731	A	G	125396731	2	3	781	1	0	0	0	0	0	0	0	1	16939	349	13	5		5	UBC	12	125396731	Silent	SNP	A	TCGA-E2-A15K-01A-11D-A12Q-09	4794459	125396731	8455164	23	67430										
NFATC4	0	genome.wustl.edu	37	chr14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-													0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agaccgggcctgcggatgttCcctgagactaggggtaccac							TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	14	24845738	24845738	C	-	DEL	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	frame_shift_del	c.2484	p.P829fs	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	98	0	0	45	35	43.21	-	-	-	-	24845738	C	-	24845738	7	5	781	1	0	1	0	1	0	0	0	0	10437	854	30	0	2522	0	NFATC4	14	24845738	Frame_Shift_Del	DEL	C	TCGA-E2-A15K-01A-11D-A12Q-09		24845738	82503802	24	67431										
ZSCAN2	0	genome.wustl.edu	37	chr15	85164438	85164438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agaaaccctactcgtgccccGagtgtggaaagagctttggc	12	11	0	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	15	85164438	85164438	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	1	known	missense	c.1012	p.E338K	0.726	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	128	1	0.78	48	27	36	-	-	-	A	85164438	G	A	85164438	3	1	781	1	0	0	0	0	1	0	0	0	18323	1059	37	1	1108	1	ZSCAN2	15	85164438	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		85164438	17366954	25	67432										
MAZ	0	genome.wustl.edu	37	chr16	29821425	29821425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tgaggtttgtccaatggcggCggcagcggcagcggcggcag	19	10	0	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	16	29821425	29821425	C	T	SNP	MAZ	ENST00000322945	human	ensembl	69_37n	1	known	missense	c.1307	p.A436V	0.930	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495	9	0	0	11	20	64.52	-	-	-	T	29821425	C	T	29821425	3	4	781	1	0	0	0	0	1	0	0	0	9411	768	27	1	1532	1	MAZ	16	29821425	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		29821425	60533328	26	67433										
ALOX12B	0	genome.wustl.edu	37	chr17	7989371	7989371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gccagggtctcgtagccatcCatccactggtaggcggggaa	14	12	1	0			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	17	7989371	7989371	C	T	SNP	ALOX12B	ENST00000319144	human	ensembl	69_37n	-1	known	missense	c.315	p.M105I	0.947	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477	66	0	0	30	14	31.82	-	-	-	T	7989371	C	T	7989371	3	4	781	1	0	0	0	0	1	0	0	0	537	594	21	4	1846	4	ALOX12B	17	7989371	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		7989371	73205839	27	67434										
MYH10	0	genome.wustl.edu	37	chr17	8415888	8415888	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	taattcctgctttttagcagCaagtcttgccctcatctctt	5	12	3	0			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	17	8415888	8415888	C	G	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.2803	p.A935P	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	240	0	0	83	28	25.23	-	-	-	G	8415888	C	G	8415888	3	3	781	1	0	0	0	0	1	0	0	0	10102	710	25	4	3270	4	MYH10	17	8415888	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	426517	8415888	72779322	28	67435										
ELAC2	0	genome.wustl.edu	37	chr17	12913975	12913975	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gaagagtccctgacccctctTctctggctaacacctgagga	9	14	2	3			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	17	12913975	12913975	T	C	SNP	ELAC2	ENST00000446899	human	ensembl	69_37n	-1	putative	missense	c.22	p.K8E	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	ELAC2	HGNC	ENSG00000006744	127	0	0	34	26	43.33	-	-	-	C	12913975	T	C	12913975	3	2	781	1	0	0	0	0	1	0	0	0	5084	1780	62	5	1855	5	ELAC2	17	12913975	Missense_Mutation	SNP	T	TCGA-E2-A15K-01A-11D-A12Q-09	4498087	12913975	68281235	29	67436										
MBD1	0	genome.wustl.edu	37	chr18	47802228	47802228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	ttccacaatccggaggcagcGtctccgttcacacttgcaga	9	14	2	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	18	47802228	47802228	G	A	SNP	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	missense	c.718	p.R240C	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	100	0	0	44	18	29.03	-	-	-	A	47802228	G	A	47802228	3	1	781	1	0	0	0	0	1	0	0	0	9413	1145	40	1	1411	1	MBD1	18	47802228	Missense_Mutation	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		47802228	30275020	30	67437										
DOT1L	0	genome.wustl.edu	37	chr19	2213589	2213589	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	agcagctcctcagccactgcCaggcccagaaggaggagatc	12	14	1	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	2213589	2213589	C	G	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.1609	p.Q537E	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	113	0	0	61	37	37.76	-	-	-	G	2213589	C	G	2213589	3	3	781	1	0	0	0	0	1	0	0	0	4744	595	21	4	1675	4	DOT1L	19	2213589	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		2213589	56915394	31	67438										
ZNF675	0	genome.wustl.edu	37	chr19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tttatcacattgaaacatttTgctctgcatagttggtaaac	6	7	2	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	26163687-7ede-43be-aeb7-21ad33133d45	19	23837311	23837311	T	A	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	nonsense	c.424	p.K142*	0.319	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	212	0	0	123	77	38.5	-	-	-	A	23837311	T	A	23837311	4	1	781	1	0	0	0	0	0	1	0	0	18178	1821	63	5	1286	5	ZNF675	19	23837311	Nonsense_Mutation	SNP	T	TCGA-E2-A15K-01A-11D-A12Q-09	21623722	23837311	35291672	32	67439										
ZNF829	0	genome.wustl.edu	37	chr19	37382643	37382645	+	In_Frame_Del	DEL	CTT	CTT	-													0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	cattcttcacattcatagagCttctcaccagcatgaattct							TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	37382643	37382645	CTT	-	DEL	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	in_frame_del	c.1293_1291	p.K431in_frame_del	0.992:1.000:1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	399	0	0	99	43	30.28	-	-	-	-	37382645	CTT	-	37382643	7	5	781	1	0	1	0	1	0	0	0	0	18275	796	28	0	252	0	ZNF829	19	37382643	In_Frame_Del	DEL	CTT	TCGA-E2-A15K-01A-11D-A12Q-09	13545332	37382643	21746340	33	67440										
LGALS4	0	genome.wustl.edu	37	chr19	39292540	39292540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tgaagcgatccaagccacagCgaatggacagctgcagggag	14	10	0	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	39292540	39292540	C	T	SNP	LGALS4	ENST00000307751	human	ensembl	69_37n	-1	known	missense	c.836	p.R279H	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS4	HGNC	ENSG00000171747	93	0	0	40	17	29.82	-	-	-	T	39292540	C	T	39292540	3	4	781	1	0	0	0	0	1	0	0	0	8799	768	27	1	139	1	LGALS4	19	39292540	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	1909897	39292540	19836443	34	67441										
DSCAM	0	genome.wustl.edu	37	chr21	41719610	41719610	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	cactgaccttcaaggaccacCtgcacatagtcttgagcgga	9	13	2	2			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	21	41719610	41719610	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.1197	p.Q399	0.996	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	176	1	0.56	77	42	35.29	-	-	-	T	41719610	C	T	41719610	2	4	781	1	0	0	0	0	0	0	0	1	4803	680	24	4		4	DSCAM	21	41719610	Silent	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09		41719610	6410285	35	67442										
TIMP3	0	genome.wustl.edu	37	chr22	33245467	33245467	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	gccaaggtggtggggaagaaGctggtaaaggaggggccctt	19	6	0	1			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	22	33245467	33245467	G	A	SNP	TIMP3	ENST00000266085	human	ensembl	69_37n	1	known	silent	c.150	p.K50	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234	226	1	0.44	83	40	32.26	-	-	-	A	33245467	G	A	33245467	2	1	781	1	0	0	0	0	0	0	0	1	16014	962	34	4		4	TIMP3	22	33245467	Silent	SNP	G	TCGA-E2-A15K-01A-11D-A12Q-09		33245467	18059099	36	67443										
DMD	0	genome.wustl.edu	37	chrX	32591673	32591673	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	tttttgaagacttgataacaTttcattttgatctttaaagc	5	5	2	4			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	X	32591673	32591673	T	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.1786	p.M596L	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	330	0	0	123	34	21.66	-	-	-	G	32591673	T	G	32591673	3	3	781	1	0	0	0	0	1	0	0	0	4616	1493	52	5	9774	5	DMD	23	32591673	Missense_Mutation	SNP	T	TCGA-E2-A15K-01A-11D-A12Q-09		32591673	122678887	37	67444										
SSX3	0	genome.wustl.edu	37	chrX	48214616	48214616	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0263157894736842	1	1	0.346334586466165	0	0.411272321428571	1	1	0	ctccctctaggtcacctcacCttttgtatcttctctggtat	5	14	5	0			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	351253e5-486b-44c3-9399-38a7e367a0e0	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	X	48214616	48214616	C	A	SNP	SSX3	ENST00000298396	human	ensembl	69_37n	-1	known	missense	c.69	p.K23N	0.036	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX3	HGNC	ENSG00000165584	922	2	0.22	377	186	33.04	-	-	-	A	48214616	C	A	48214616	3	1	781	1	0	0	0	0	1	0	0	0	15296	695	24	4	572	4	SSX3	23	48214616	Missense_Mutation	SNP	C	TCGA-E2-A15K-01A-11D-A12Q-09	15622943	48214616	107055944	38	67445										
GPSM2	0	genome.wustl.edu	37	chr1	109466799	109466799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gactaatgacaacaaagaggCtgatgaagatttctttgaca	9	6	1	6			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	1	109466799	109466799	C	A	SNP	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	missense	c.1778	p.A593D	1.000	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	228	0	0	139	78	35.94	-	-	-	A	109466799	C	A	109466799	3	1	782	1	0	0	0	0	1	0	0	0	6786	797	28	4	1828	4	GPSM2	1	109466799	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		109466799	139783822	1	67446										
RYR2	0	genome.wustl.edu	37	chr1	237947353	237947353	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gcacatgcccaacgatacccGacttcagacttttctggaat	7	13	2	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	1	237947353	237947353	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.12359	p.R4120Q	0.938	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	157	0	0	134	50	27.03	-	-	-	A	237947353	G	A	237947353	3	1	782	1	0	0	0	0	1	0	0	0	13855	1058	37	1	12699	1	RYR2	1	237947353	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	128480554	237947353	11303268	2	67447										
FOSL2	0	genome.wustl.edu	37	chr2	28631710	28631710	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	agtgccggaaccgacgccggGagctgacagagaagctgcag	16	11	0	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	2	28631710	28631710	G	C	SNP	FOSL2	ENST00000264716	human	ensembl	69_37n	1	known	missense	c.439	p.E147Q	1.000	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL2	HGNC	ENSG00000075426	58	0	0	19	9	32.14	-	-	-	C	28631710	G	C	28631710	3	2	782	1	0	0	0	0	1	0	0	0	6034	1175	41	2	449	2	FOSL2	2	28631710	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09		28631710	214567663	3	67448										
DNAH1	0	genome.wustl.edu	37	chr3	52430731	52430731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	cctgggcttcaacatcccctAtgagttcacggatggagatc	10	12	2	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	3	52430731	52430731	A	G	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.11528	p.Y3843C	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	153	0	0	78	45	36.29	-	-	-	G	52430731	A	G	52430731	3	3	782	1	0	0	0	0	1	0	0	0	4633	449	16	5	11810	5	DNAH1	3	52430731	Missense_Mutation	SNP	A	TCGA-E2-A15L-01A-11D-A12B-09		52430731	145591699	4	67449										
PRICKLE2	0	genome.wustl.edu	37	chr3	64133124	64133124	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ctggttcagcatgggctcctCcgtcttgcccttgttcttgc	10	14	3	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	3	64133124	64133124	C	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	nonsense	c.1042	p.E348*	0.999	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	188	0	0	108	57	34.34	-	-	-	A	64133124	C	A	64133124	4	1	782	1	0	0	0	0	0	1	0	0	12568	864	30	2	1500	2	PRICKLE2	3	64133124	Nonsense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09	11702393	64133124	133889306	5	67450										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	297	1	0.33	140	85	37.78	-	-	-	G	178952085	A	G	178952085	3	3	782	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A15L-01A-11D-A12B-09	114818961	178952085	19070345	6	67451										
FBXW7	0	genome.wustl.edu	37	chr4	153244156	153244156	+	Frame_Shift_Del	DEL	C	C	-													0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	cgccacacaactcccccactCcccccactctccaatgtgac							TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	4	153244156	153244156	C	-	DEL	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	frame_shift_del	c.2001	p.S668fs	0.990	smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	615	0	0	313	177	35.69	-	-	-	-	153244156	C	-	153244156	7	5	782	1	0	1	0	1	0	0	0	0	5815	842	30	0	126	0	FBXW7	4	153244156	Frame_Shift_Del	DEL	C	TCGA-E2-A15L-01A-11D-A12B-09		153244156	37910120	7	67452										
NLN	0	genome.wustl.edu	37	chr5	65088425	65088425	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ccctctctcctgagacacgaCgaggtgaggacttactttca	9	13	2	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	5	65088425	65088425	C	T	SNP	NLN	ENST00000509935	human	ensembl	69_37n	1	putative	nonsense	c.259	p.R87*	0.978	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLN	HGNC	ENSG00000123213	210	0	0	219	164	42.6	-	-	-	T	65088425	C	T	65088425	4	4	782	1	0	0	0	0	0	1	0	0	10539	535	19	1	1504	1	NLN	5	65088425	Nonsense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		65088425	115826835	8	67453										
DMXL1	0	genome.wustl.edu	37	chr5	118480270	118480270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tgcttcatgtttttgaagaaGacttcattttgaataacctt	6	6	2	4			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	5	118480270	118480270	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	missense	c.2506	p.D836N	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	170	0	0	113	102	47.44	-	-	-	A	118480270	G	A	118480270	3	1	782	1	0	0	0	0	1	0	0	0	4630	942	33	2	2564	2	DMXL1	5	118480270	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	53391845	118480270	62434990	9	67454										
GRHL2	0	genome.wustl.edu	37	chr8	102571029	102571029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	acagcgagagcttcaaggacGcagccacagaggtgagtccc	13	12	1	3			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	8	102571029	102571029	G	A	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	missense	c.667	p.A223T	0.995	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	37	0	0	21	12	35.29	-	-	-	A	102571029	G	A	102571029	3	1	782	1	0	0	0	0	1	0	0	0	6815	1087	38	1	681	1	GRHL2	8	102571029	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09		102571029	43792993	10	67455										
OXR1	0	genome.wustl.edu	37	chr8	107715146	107715146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	caccttagggcacagtcagtGgtgtgctgctagttacacca	11	11	1	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	8	107715146	107715146	G	A	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	1	known	missense	c.691	p.G231S	1.000	pfam_GRAM	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	233	0	0	137	73	34.76	-	-	-	A	107715146	G	A	107715146	3	1	782	1	0	0	0	0	1	0	0	0	11407	1348	47	4	917	4	OXR1	8	107715146	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	5144117	107715146	38648876	11	67456										
MSMP	0	genome.wustl.edu	37	chr9	35753714	35753714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tgcaatggaaacagtccttgCggagccaagactcacccagg	11	12	1	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	9	35753714	35753714	C	T	SNP	MSMP	ENST00000436428	human	ensembl	69_37n	-1	known	missense	c.182	p.R61H	1.000	pfam_PSP94	pfam_PSP94	-	no_errors	MSMP	HGNC	ENSG00000215183	135	0	0	52	42	44.68	-	-	-	T	35753714	C	T	35753714	3	4	782	1	0	0	0	0	1	0	0	0	9956	768	27	1	245	1	MSMP	9	35753714	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		35753714	105459717	12	67457										
UNC5B	0	genome.wustl.edu	37	chr10	73039667	73039667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tcctgcaggagccacaggacGcctacattgtgaagaacaag	11	11	0	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	10	73039667	73039667	G	A	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	missense	c.169	p.A57T	1.000	smart_Ig_sub	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	22	0	0	16	6	27.27	-	-	-	A	73039667	G	A	73039667	3	1	782	1	0	0	0	0	1	0	0	0	17089	1087	38	1	175	1	UNC5B	10	73039667	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09		73039667	62495080	13	67458										
CPM	0	genome.wustl.edu	37	chr12	69265694	69265694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gtctttgccatcactggttaCgagatagtcaatcagatgga	10	8	4	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	12	69265694	69265694	C	T	SNP	CPM	ENST00000338356	human	ensembl	69_37n	-1	known	missense	c.301	p.V101I	0.323	pfam_Peptidase_M14,pfam_Aste_AspA,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Aste_AspA,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPM	HGNC	ENSG00000135678	294	0	0	170	100	37.04	-	-	-	T	69265694	C	T	69265694	3	4	782	1	0	0	0	0	1	0	0	0	3838	536	19	1	1054	1	CPM	12	69265694	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		69265694	64586201	14	67459										
TMEM132B	0	genome.wustl.edu	37	chr12	126137027	126137027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ctccatcctggctgagaagaCggtgattgtcctggatgacc	12	11	0	4			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	12	126137027	126137027	C	T	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	missense	c.1940	p.T647M	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	77	0	0	40	21	34.43	-	-	-	T	126137027	C	T	126137027	3	4	782	1	0	0	0	0	1	0	0	0	16141	536	19	1	1970	1	TMEM132B	12	126137027	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09	56871333	126137027	7714868	15	67460										
NIN	0	genome.wustl.edu	37	chr14	51237222	51237222	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ctgcaggatctgctctctctCttttcggagttcatttttta	7	10	4	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	14	51237222	51237222	C	G	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.1318	p.E440Q	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	541	0	0	347	165	32.16	-	-	-	G	51237222	C	G	51237222	3	3	782	1	0	0	0	0	1	0	0	0	10489	922	32	2	5311	2	NIN	14	51237222	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		51237222	56112318	16	67461										
CCNK	0	genome.wustl.edu	37	chr14	99968624	99968624	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tctcgcaggacgtttgtgcaAatttgaaatacaagaatgga	10	6	1	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	14	99968624	99968624	A	G	SNP	CCNK	ENST00000389879	human	ensembl	69_37n	1	known	missense	c.656	p.K219R	1.000	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNK	HGNC	ENSG00000090061	454	0	0	272	121	30.79	-	-	-	G	99968624	A	G	99968624	3	3	782	1	0	0	0	0	1	0	0	0	2959	14	1	5	678	5	CCNK	14	99968624	Missense_Mutation	SNP	A	TCGA-E2-A15L-01A-11D-A12B-09	48731402	99968624	7380916	17	67462										
TAOK2	0	genome.wustl.edu	37	chr16	29994166	29994166	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	agtaccgcaagatgaagaagAtcctgttccaagaggcaccc	10	11	0	5			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	16	29994166	29994166	A	T	SNP	TAOK2	ENST00000308893	human	ensembl	69_37n	1	known	missense	c.943	p.I315F	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	66	0	0	30	21	41.18	-	-	-	T	29994166	A	T	29994166	3	4	782	1	0	0	0	0	1	0	0	0	15640	333	12	5	981	5	TAOK2	16	29994166	Missense_Mutation	SNP	A	TCGA-E2-A15L-01A-11D-A12B-09		29994166	60360587	18	67463										
RRAD	0	genome.wustl.edu	37	chr16	66957813	66957813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ccactacaatggagcgatcaTaggtgtgccctaggcagaag	12	10	1	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	16	66957813	66957813	T	C	SNP	RRAD	ENST00000299759	human	ensembl	69_37n	-1	known	missense	c.380	p.Y127C	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAD	HGNC	ENSG00000166592	282	1	0.35	88	73	45.06	-	-	-	C	66957813	T	C	66957813	3	2	782	1	0	0	0	0	1	0	0	0	13757	1406	49	5	558	5	RRAD	16	66957813	Missense_Mutation	SNP	T	TCGA-E2-A15L-01A-11D-A12B-09	36963647	66957813	23396940	19	67464										
ZFPM1	0	genome.wustl.edu	37	chr16	88593275	88593276	+	Frame_Shift_Ins	INS	-	-	C													0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	cctgctggctgaggacgctgINSccccaggccctgactgaggc							TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	16	88593275	88593276	-	C	INS	ZFPM1	ENST00000319555	human	ensembl	69_37n	1	known	frame_shift_ins	c.456_457	p.Q153fs	0.992:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588	56	0	0	21	10	32.26	-	-	-	C	88593276	-	C	88593275	7	5	782	1	0	1	1	0	0	0	0	0	17753	1306	46	0	474	0	ZFPM1	16	88593275	Frame_Shift_Ins	INS	-	TCGA-E2-A15L-01A-11D-A12B-09	21635462	88593275	1761478	20	67465										
PCSK4	0	genome.wustl.edu	37	chr19	1482437	1482437	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	cgcgctgtcatgtcctcggcCgtcccatagagcagcagcgt	12	15	1	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	19	1482437	1482437	C	T	SNP	PCSK4	ENST00000300954	human	ensembl	69_37n	-1	known	silent	c.1734	p.T578	0.304	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257	21	0	0	7	7	50	-	-	-	T	1482437	C	T	1482437	2	4	782	1	0	0	0	0	0	0	0	1	11675	639	23	1		1	PCSK4	19	1482437	Silent	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		1482437	57646546	21	67466										
PRKACA	0	genome.wustl.edu	37	chr19	14213716	14213716	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gggtgtgttcgatctgtttcAgtttcaccacctgggaaggg	14	8	3	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	19	14213716	14213716	A	G	SNP	PRKACA	ENST00000308677	human	ensembl	69_37n	-1	known	missense	c.248	p.L83P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	506	0	0	282	150	34.72	-	-	-	G	14213716	A	G	14213716	3	3	782	1	0	0	0	0	1	0	0	0	12578	188	7	5	835	5	PRKACA	19	14213716	Missense_Mutation	SNP	A	TCGA-E2-A15L-01A-11D-A12B-09	12731279	14213716	44915267	22	67467										
CIB3	0	genome.wustl.edu	37	chr19	16279058	16279058	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tgtggccatccccatcctcaGagaatacctgggcaatcctc	8	15	1	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	19	16279058	16279058	G	C	SNP	CIB3	ENST00000269878	human	ensembl	69_37n	-1	known	missense	c.236	p.S79C	0.997	NULL	pfscan_EF_HAND_2	-	no_errors	CIB3	HGNC	ENSG00000141977	145	0	0	78	49	38.58	-	-	-	C	16279058	G	C	16279058	3	2	782	1	0	0	0	0	1	0	0	0	3451	942	33	2	339	2	CIB3	19	16279058	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	2065342	16279058	42849925	23	67468										
RPS16	0	genome.wustl.edu	37	chr19	39926258	39926258	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tcccagcaccttgtactgtaGcgtgcgcggctcaatcatct	9	14	3	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	19	39926258	39926258	G	C	SNP	RPS16	ENST00000339471	human	ensembl	69_37n	-1	known	missense	c.139	p.L47V	1.000	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	RPS16	HGNC	ENSG00000105193	101	0	0	64	55	45.83	-	-	-	C	39926258	G	C	39926258	3	2	782	1	0	0	0	0	1	0	0	0	13713	962	34	4	317	4	RPS16	19	39926258	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	23647200	39926258	19202725	24	67469										
CCDC8	0	genome.wustl.edu	37	chr19	46915828	46915828	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gtcaccatctgctgcactctCctcctcactcggggctcctt	7	18	4	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	19	46915828	46915828	C	T	SNP	CCDC8	ENST00000307522	human	ensembl	69_37n	-1	known	silent	c.240	p.R80	0.965	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515	41	0	0	25	16	39.02	-	-	-	T	46915828	C	T	46915828	2	4	782	1	0	0	0	0	0	0	0	1	2880	854	30	2		2	CCDC8	19	46915828	Silent	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09	6989570	46915828	12213155	25	67470										
RASIP1	0	genome.wustl.edu	37	chr19	49225113	49225113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tatcccattgctcctcacctGtgtccacagcctcccgctct	5	19	2	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	19	49225113	49225113	G	A	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	missense	c.2690	p.T897I	1.000	pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538	58	0	0	36	4	10	-	-	-	A	49225113	G	A	49225113	3	1	782	1	0	0	0	0	1	0	0	0	13161	1377	48	4	209	4	RASIP1	19	49225113	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	2309285	49225113	9903870	26	67471										
PTPRA	0	genome.wustl.edu	37	chr20	3016449	3016449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	tccaaaggagaataagagccGgcagatccggcagttccact	11	11	0	3			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	20	3016449	3016449	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.2093	p.R698Q	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	62	0	0	39	35	47.3	-	-	-	A	3016449	G	A	3016449	3	1	782	1	0	0	0	0	1	0	0	0	12878	1116	39	1	2134	1	PTPRA	20	3016449	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09		3016449	60009071	27	67472										
C20orf20	0	genome.wustl.edu	37	chr20	61427963	61427963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	gcccggcggaggagacagtgGtgtggagccccgaggtggag	21	9	0	1			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	0744c5e3-f044-4c56-b3c6-f8678f69c55a	20	61427963	61427963	G	A	SNP	C20orf20	ENST00000370487	human	ensembl	69_37n	1	known	missense	c.88	p.V30M	1.000	NULL	pfam_EAF7	-	no_errors	C20orf20	HGNC	ENSG00000101189	9	0	0	4	4	50	-	-	-	A	61427963	G	A	61427963	3	1	782	1	0	0	0	0	1	0	0	0	2123	1261	44	4	90	4	C20orf20	20	61427963	Missense_Mutation	SNP	G	TCGA-E2-A15L-01A-11D-A12B-09	58411514	61427963	1597557	28	67473										
ACE2	0	genome.wustl.edu	37	chrX	15610358	15610358	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	aattagtagcctacctggttCaagtaataagcattcttgtg	8	7	2	0			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	X	15610358	15610358	C	A	SNP	ACE2	ENST00000252519	human	ensembl	69_37n	-1	known	nonsense	c.433	p.E145*	1.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234	525	0	0	286	270	48.39	-	-	-	A	15610358	C	A	15610358	4	1	782	1	0	0	0	0	0	1	0	0	137	835	29	2	2048	2	ACE2	23	15610358	Nonsense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09		15610358	139660202	29	67474										
FAM47C	0	genome.wustl.edu	37	chrX	37026638	37026638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.871886716160037	1.06800709639267	3.38202247191011	0.450936329588015	1	1	0	ccagaactgggtatttgtgaCggagggcatggacgacttcc	14	9	0	2			TCGA-E2-A15L-01A-11D-A12B-09	TCGA-E2-A15L-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e86ae11-0b76-43ac-b0b8-664a59c3aa6a	f7f1f468-a589-4593-82e4-abbf09d26fcc	X	37026638	37026638	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.155	p.T52M	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	244	1	0.4	201	66	24.72	-	-	-	T	37026638	C	T	37026638	3	4	782	1	0	0	0	0	1	0	0	0	5617	536	19	1	157	1	FAM47C	23	37026638	Missense_Mutation	SNP	C	TCGA-E2-A15L-01A-11D-A12B-09	21416280	37026638	118243922	30	67475										
TAS1R2	0	genome.wustl.edu	37	chr1	19186120	19186120	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ccaggacccataggaggaagAacagggaggagatggtcttt	15	7	1	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	1	19186120	19186120	A	T	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	missense	c.35	p.F12Y	0.035	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	275	1	0.36	270	35	11.48	-	-	-	T	19186120	A	T	19186120	3	4	783	1	0	0	0	0	1	0	0	0	15655	246	9	5	2508	5	TAS1R2	1	19186120	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09		19186120	230064501	1	67476										
CRB1	0	genome.wustl.edu	37	chr1	197397057	197397057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	atctggaattctttccaaatCcaacaaacaatgcatctctc	3	12	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	1	197397057	197397057	C	T	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.2602	p.P868S	0.013	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	168	0	0	108	63	36.84	-	-	-	T	197397057	C	T	197397057	3	4	783	1	0	0	0	0	1	0	0	0	3878	855	30	2	2628	2	CRB1	1	197397057	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	178210937	197397057	51853564	2	67477										
CR1	0	genome.wustl.edu	37	chr1	207753648	207753648	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aagccatcaggacaacttttCacctgggcaggaagtgttct	10	10	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	1	207753648	207753648	C	T	SNP	CR1	ENST00000367049	human	ensembl	69_37n	1	known	missense	c.5000	p.S1667L	0.003	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	266	0	0	325	167	33.94	-	-	-	T	207753648	C	T	207753648	3	4	783	1	0	0	0	0	1	0	0	0	3870	838	29	2	5118	2	CR1	1	207753648	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	10356591	207753648	41496973	3	67478										
OR2M5	0	genome.wustl.edu	37	chr1	248308750	248308750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tggctggttgtgccacacaaAttttcttctatgtatcactg	8	9	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	1	248308750	248308750	A	G	SNP	OR2M5	ENST00000366476	human	ensembl	69_37n	1	known	missense	c.301	p.I101V	0.992	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727	720	2	0.28	1119	241	17.71	-	-	-	G	248308750	A	G	248308750	3	3	783	1	0	0	0	0	1	0	0	0	11086	101	4	5	303	5	OR2M5	1	248308750	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09	40555102	248308750	941871	4	67479										
OR2T3	0	genome.wustl.edu	37	chr1	248637013	248637013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	agctgaggttttcctcctggCtgccatggcctatgaccgat	11	12	0	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	1	248637013	248637013	C	A	SNP	OR2T3	ENST00000359594	human	ensembl	69_37n	1	known	missense	c.362	p.A121D	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2T3	HGNC	ENSG00000196539	245	1	0.4	488	227	31.75	-	-	-	A	248637013	C	A	248637013	3	1	783	1	0	0	0	0	1	0	0	0	11096	797	28	4	364	4	OR2T3	1	248637013	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	328263	248637013	613608	5	67480										
FBXO41	0	genome.wustl.edu	37	chr2	73487592	73487592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctccagtcccttcaggccttCccggcagacctctgctgcca	8	19	2	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	2	73487592	73487592	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	69_37n	-1	known	missense	c.2557	p.E853K	1.000	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO41	HGNC	ENSG00000163013	96	0	0	144	39	21.31	-	-	-	T	73487592	C	T	73487592	3	4	783	1	0	0	0	0	1	0	0	0	5796	864	30	2	265	2	FBXO41	2	73487592	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09		73487592	169711781	6	67481										
FN1	0	genome.wustl.edu	37	chr2	216262561	216262561	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cctctcctccctggcttggtCgtacacccagctagaggaag	10	15	1	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	2	216262561	216262561	C	G	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.3359	p.R1120P	0.991	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	202	0	0	225	61	21.33	-	-	-	G	216262561	C	G	216262561	3	3	783	1	0	0	0	0	1	0	0	0	6008	884	31	3	4174	3	FN1	2	216262561	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	142774969	216262561	26936812	7	67482										
PER2	0	genome.wustl.edu	37	chr2	239164504	239164504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cacaggccagggcagggcccGccaggcagtccagggattct	15	14	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	2	239164504	239164504	G	A	SNP	PER2	ENST00000254657	human	ensembl	69_37n	-1	known	missense	c.2114	p.A705V	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	106	1	0.93	142	20	12.27	-	-	-	A	239164504	G	A	239164504	3	1	783	1	0	0	0	0	1	0	0	0	11803	1087	38	1	1677	1	PER2	2	239164504	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	22901943	239164504	4034869	8	67483										
CCDC66	0	genome.wustl.edu	37	chr3	56653393	56653393	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aaaacagtagctatgagagaGagaatttgatctcaggaagt	11	4	1	4			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	3	56653393	56653393	G	A	SNP	CCDC66	ENST00000394672	human	ensembl	69_37n	1	known	missense	c.2473	p.E825K	0.970	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376	319	2	0.62	126	16	11.27	-	-	-	A	56653393	G	A	56653393	3	1	783	1	0	0	0	0	1	0	0	0	2865	943	33	2	2535	2	CCDC66	3	56653393	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		56653393	141369037	9	67484										
CRYBG3	0	genome.wustl.edu	37	chr3	97607255	97607255	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aggaagaccatgggctctttGagatttctacagcagaaatg	11	7	2	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	3	97607255	97607255	G	C	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1516	p.E506Q	1.000	superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	225	0	0	61	11	15.28	-	-	-	C	97607255	G	C	97607255	3	2	783	1	0	0	0	0	1	0	0	0	3943	1291	45	2	1538	2	CRYBG3	3	97607255	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	40953862	97607255	100415175	10	67485										
COX17	0	genome.wustl.edu	37	chr3	119396062	119396062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cgcactgaccacgcatcgcgCgccttcttggtctccgggca	11	17	2	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	3	119396062	119396062	C	T	SNP	COX17	ENST00000486606	human	ensembl	69_37n	-1	known	missense	c.80	p.R27H	1.000	pfam_Cyt_c_oxidase_Cu-chaperone,superfamily_MTCP1	pfam_Cyt_c_oxidase_Cu-chaperone,superfamily_MTCP1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COX17	HGNC	ENSG00000138495	27	0	0	104	17	14.05	-	-	-	T	119396062	C	T	119396062	3	4	783	1	0	0	0	0	1	0	0	0	3796	755	27	1	103	1	COX17	3	119396062	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	21788807	119396062	78626368	11	67486										
GPR149	0	genome.wustl.edu	37	chr3	154138885	154138885	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tcccagtctgaaagatctggTttctgactctcttcatgaga	8	10	5	4			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	3	154138885	154138885	T	C	SNP	GPR149	ENST00000389740	human	ensembl	69_37n	-1	known	silent	c.1566	p.K522	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR149	HGNC	ENSG00000174948	360	1	0.28	341	50	12.79	-	-	-	C	154138885	T	C	154138885	2	2	783	1	0	0	0	0	0	0	0	1	6704	1722	60	5		5	GPR149	3	154138885	Silent	SNP	T	TCGA-E2-A15M-01A-11D-A12B-09	34742823	154138885	43883545	12	67487										
GPR125	0	genome.wustl.edu	37	chr4	22390713	22390713	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	agaatataaaatactcactaGggtgcgtttggccgactgcc	10	9	1	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	4	22390713	22390713	G	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	silent	c.2721	p.P907	0.911	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	246	0	0	179	25	12.25	-	-	-	C	22390713	G	C	22390713	2	2	783	1	0	0	0	0	0	0	0	1	6689	987	35	4		4	GPR125	4	22390713	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		22390713	168763563	13	67488										
FAM114A1	0	genome.wustl.edu	37	chr4	38910268	38910268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ggaattcatcggcaagaaaaCcatgaatgtccttgcagaaa	9	8	1	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	4	38910268	38910268	C	A	SNP	FAM114A1	ENST00000358869	human	ensembl	69_37n	1	known	missense	c.713	p.T238N	1.000	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A1	HGNC	ENSG00000197712	289	2	0.69	171	49	22.07	-	-	-	A	38910268	C	A	38910268	3	1	783	1	0	0	0	0	1	0	0	0	5443	507	18	4	731	4	FAM114A1	4	38910268	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	16519555	38910268	152244008	14	67489										
CENPE	0	genome.wustl.edu	37	chr4	104084638	104084638	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	accaacatgaatgctcacctCaagatcttgattatatactt	4	10	3	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	4	104084638	104084638	C	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.1720	p.E574Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	271	0	0	96	36	27.27	-	-	-	G	104084638	C	G	104084638	3	3	783	1	0	0	0	0	1	0	0	0	3259	835	29	2	6517	2	CENPE	4	104084638	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	65174370	104084638	87069638	15	67490										
SCLT1	0	genome.wustl.edu	37	chr4	129964598	129964598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tctcctaggtgtttatcataCtcagtaacaagaggagctaa	8	8	3	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	4	129964598	129964598	C	T	SNP	SCLT1	ENST00000281142	human	ensembl	69_37n	-1	known	silent	c.186	p.E62	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466	285	0	0	38	5	11.63	-	-	-	T	129964598	C	T	129964598	2	4	783	1	0	0	0	0	0	0	0	1	13994	564	20	4		4	SCLT1	4	129964598	Silent	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	25879960	129964598	61189678	16	67491										
PALLD	0	genome.wustl.edu	37	chr4	169433082	169433082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gcctccgaaaggctgaaaagCgtggtgcaaaaactcccagc	11	12	0	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	4	169433082	169433082	C	T	SNP	PALLD	ENST00000261509	human	ensembl	69_37n	1	known	missense	c.427	p.R143C	0.016	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	54	0	0	32	17	34.69	-	-	-	T	169433082	C	T	169433082	3	4	783	1	0	0	0	0	1	0	0	0	11480	768	27	1	429	1	PALLD	4	169433082	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	39468484	169433082	21721194	17	67492										
ITGA1	0	genome.wustl.edu	37	chr5	52243219	52243219	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gggctaccgggcagagtgccAttatgggtcatcctgctgag	15	10	1	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	5	52243219	52243219	A	T	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	silent	c.3423	p.P1141	0.176	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	742	3	0.4	632	161	20.3	-	-	-	T	52243219	A	T	52243219	2	4	783	1	0	0	0	0	0	0	0	1	7926	204	8	5		5	ITGA1	5	52243219	Silent	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09		52243219	128672041	18	67493										
CMYA5	0	genome.wustl.edu	37	chr5	79032493	79032493	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gtggagaaaaccaagactttCctgccggtggctctttcttg	11	10	2	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	5	79032493	79032493	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.7905	p.F2635L	0.007	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	142	1	0.7	75	21	21.88	-	-	-	A	79032493	C	A	79032493	3	1	783	1	0	0	0	0	1	0	0	0	3620	854	30	2	7911	2	CMYA5	5	79032493	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	26789274	79032493	101882767	19	67494										
BRD8	0	genome.wustl.edu	37	chr5	137480865	137480865	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cttgacccctttttcactgaCcttttcaccacatccttgta	3	15	2	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	5	137480865	137480865	C	T	SNP	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	splice_site	c.3437+1	e25+1	1.000	-	-	-	no_errors	BRD8	HGNC	ENSG00000112983	701	3	0.42	286	133	31.74	-	-	-	T	137480865	C	T	137480865	5	4	783	1	0	0	0	0	0	0	1	0	1514	521	18	4	281	4	BRD8	5	137480865	Splice_Site	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	58448372	137480865	43434395	20	67495										
CDC25C	0	genome.wustl.edu	37	chr5	137666884	137666884	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	agacatggtcttcgaattctCaccaggagaaaaacaaaacc	7	10	2	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	5	137666884	137666884	C	T	SNP	CDC25C	ENST00000510119	human	ensembl	69_37n	-1	putative	missense	c.37	p.E13K	0.734	NULL	pfam_MPI_Phosphatase	-	no_stop_codon	CDC25C	HGNC	ENSG00000158402	143	1	0.69	101	17	14.41	-	-	-	T	137666884	C	T	137666884	3	4	783	1	0	0	0	0	1	0	0	0	3093	841	29	2		2	CDC25C	5	137666884	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	186019	137666884	43248376	21	67496										
LCP2	0	genome.wustl.edu	37	chr5	169697879	169697879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctcatagtctccatcatcctCcccatcctggtcatcattgg	5	16	5	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	5	169697879	169697879	C	T	SNP	LCP2	ENST00000046794	human	ensembl	69_37n	-1	known	missense	c.367	p.E123K	0.982	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	193	0	0	244	120	32.97	-	-	-	T	169697879	C	T	169697879	3	4	783	1	0	0	0	0	1	0	0	0	8746	864	30	2	1294	2	LCP2	5	169697879	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	32030995	169697879	11217381	22	67497										
DSP	0	genome.wustl.edu	37	chr6	7583848	7583848	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	caagaaaaatttgattgataGagaaaccggaatgcgcctgc	10	7	0	4			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	6	7583848	7583848	G	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.6353	p.R2118T	0.996	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	118	0	0	52	6	10.34	-	-	-	C	7583848	G	C	7583848	3	2	783	1	0	0	0	0	1	0	0	0	4816	942	33	2	6447	2	DSP	6	7583848	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		7583848	163531219	23	67498										
TTBK1	0	genome.wustl.edu	37	chr6	43225687	43225687	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ccccagcagaacacccggcaGacggcagccatgtttgggtg	13	14	0	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	6	43225687	43225687	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	silent	c.999	p.Q333	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	66	0	0	113	15	11.63	-	-	-	A	43225687	G	A	43225687	2	1	783	1	0	0	0	0	0	0	0	1	16773	933	33	2		2	TTBK1	6	43225687	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	35641839	43225687	127889380	24	67499										
HOXA5	0	genome.wustl.edu	37	chr7	27182735	27182735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ggcggcgccgggctcggctcGctctgcgcactcgcctgctc	15	18	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	7	27182735	27182735	G	T	SNP	HOXA5	ENST00000222726	human	ensembl	69_37n	-1	known	missense	c.492	p.S164R	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004	57	0	0	56	19	25.33	-	-	-	T	27182735	G	T	27182735	3	4	783	1	0	0	0	0	1	0	0	0	7346	1078	38	3	328	3	HOXA5	7	27182735	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		27182735	131955928	25	67500										
POU6F2	0	genome.wustl.edu	37	chr7	39379419	39379419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ccaccccagcagccaccaccCgcctctcagcagccgccagc	7	24	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	7	39379419	39379419	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	69_37n	1	known	silent	c.690	p.P230	0.119	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	224	1	0.44	352	111	23.92	-	-	-	T	39379419	C	T	39379419	2	4	783	1	0	0	0	0	0	0	0	1	12358	639	23	1		1	POU6F2	7	39379419	Silent	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	12196684	39379419	119759244	26	67501										
HECW1	0	genome.wustl.edu	37	chr7	43351515	43351515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ggggcggcccccacgatggcGtcaccattccccgctccacc	11	20	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	7	43351515	43351515	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.181	p.V61I	0.933	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	69	0	0	125	41	24.4	-	-	-	A	43351515	G	A	43351515	3	1	783	1	0	0	0	0	1	0	0	0	7093	1145	40	1	187	1	HECW1	7	43351515	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	3972096	43351515	115787148	27	67502										
ASL	0	genome.wustl.edu	37	chr7	65551616	65551616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gtacacccatttgcagagggCccagcccatccgctggagcc	11	16	0	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	7	65551616	65551616	C	T	SNP	ASL	ENST00000304874	human	ensembl	69_37n	1	known	missense	c.491	p.A164V	1.000	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	pfam_Lyase1_N,superfamily_L-Aspartase-like,prints_D_crystallin,prints_Fumarate_lyase,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522	72	0	0	87	13	13	-	-	-	T	65551616	C	T	65551616	3	4	783	1	0	0	0	0	1	0	0	0	1048	739	26	4	513	4	ASL	7	65551616	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	22200101	65551616	93587047	28	67503										
FLNC	0	genome.wustl.edu	37	chr7	128491585	128491585	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aacaaggatggcacctgcacCgtgtcctatctgccgactgc	10	14	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	7	128491585	128491585	C	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	silent	c.5745	p.T1915	0.034	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	77	0	0	149	23	13.37	-	-	-	A	128491585	C	A	128491585	2	1	783	1	0	0	0	0	0	0	0	1	5981	639	23	3		3	FLNC	7	128491585	Silent	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	62939969	128491585	30647078	29	67504										
AGK	0	genome.wustl.edu	37	chr7	141296374	141296374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttttttaggtgtttggcaatCaactcattcctcccaatgca	6	10	2	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	7	141296374	141296374	C	G	SNP	AGK	ENST00000355413	human	ensembl	69_37n	1	known	missense	c.154	p.Q52E	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	608	2	0.33	324	63	16.28	-	-	-	G	141296374	C	G	141296374	3	3	783	1	0	0	0	0	1	0	0	0	383	827	29	2	164	2	AGK	7	141296374	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	12804789	141296374	17842289	30	67505										
HEY1	0	genome.wustl.edu	37	chr8	80679523	80679523	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	atggaacctagagccgaactCaagtttctgaaaagagaaaa	9	7	2	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	8	80679523	80679523	C	T	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	silent	c.96	p.L32	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	181	1	0.55	61	50	45.05	-	-	-	T	80679523	C	T	80679523	2	4	783	1	0	0	0	0	0	0	0	1	7129	825	29	2		2	HEY1	8	80679523	Silent	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09		80679523	65684499	31	67506										
LRP12	0	genome.wustl.edu	37	chr8	105509599	105509599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aatgccaatacccatcacaaCgctgctgctcagtataacac	5	14	2	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	8	105509599	105509599	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.1124	p.R375H	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	336	1	0.3	204	145	41.55	-	-	-	T	105509599	C	T	105509599	3	4	783	1	0	0	0	0	1	0	0	0	9020	536	19	1	1410	1	LRP12	8	105509599	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	24830076	105509599	40854423	32	67507										
EIF2C2	0	genome.wustl.edu	37	chr8	141549423	141549423	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tcatgcagaaactcacccgcTcgttcttgtcagtgcagaag	9	12	4	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	8	141549423	141549423	T	A	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.2165	p.E722V	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	115	0	0	186	26	12.26	-	-	-	A	141549423	T	A	141549423	3	1	783	1	0	0	0	0	1	0	0	0	5041	1551	54	5	430	5	EIF2C2	8	141549423	Missense_Mutation	SNP	T	TCGA-E2-A15M-01A-11D-A12B-09	36039824	141549423	4814599	33	67508										
FBXO10	0	genome.wustl.edu	37	chr9	37537587	37537587	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gtagggctctggctgccctcGataacaatgtcacaggtctt	11	11	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	9	37537587	37537587	G	A	SNP	FBXO10	ENST00000432825	human	ensembl	69_37n	-1	known	silent	c.939	p.I313	0.117	NULL	pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom_cyclin-like,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912	111	0	0	116	25	17.61	-	-	-	A	37537587	G	A	37537587	2	1	783	1	0	0	0	0	0	0	0	1	5772	1048	37	1		1	FBXO10	9	37537587	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		37537587	103675844	34	67509										
FBXW2	0	genome.wustl.edu	37	chr9	123550286	123550286	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tcaccttattccactgtttaGagacgaggcagcatgtgagt	10	9	1	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	9	123550286	123550286	G	C	SNP	FBXW2	ENST00000373926	human	ensembl	69_37n	-1	known	missense	c.251	p.S84C	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402	269	2	0.73	160	71	30.74	-	-	-	C	123550286	G	C	123550286	3	2	783	1	0	0	0	0	1	0	0	0	5812	942	33	2	1137	2	FBXW2	9	123550286	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	86012699	123550286	17663145	35	67510										
RAPGEF1	0	genome.wustl.edu	37	chr9	134514093	134514093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctccttgtcttctgagttcaCgccttccagcatcacttggt	7	14	4	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	9	134514093	134514093	C	T	SNP	RAPGEF1	ENST00000372190	human	ensembl	69_37n	-1	known	missense	c.583	p.V195M	0.997	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	338	2	0.59	297	82	21.64	-	-	-	T	134514093	C	T	134514093	3	4	783	1	0	0	0	0	1	0	0	0	13126	536	19	1	2784	1	RAPGEF1	9	134514093	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	10963807	134514093	6699338	36	67511										
RPP30	0	genome.wustl.edu	37	chr10	92638822	92638822	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttctttttgtattcctagagAgcaacttcttcaagggcccg	8	10	3	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	10	92638822	92638822	A	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	1	known	missense	c.273	p.R91S	1.000	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	466	4	0.85	188	44	18.97	-	-	-	T	92638822	A	T	92638822	3	4	783	1	0	0	0	0	1	0	0	0	13698	301	11	5	291	5	RPP30	10	92638822	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09		92638822	42895925	37	67512										
SORCS1	0	genome.wustl.edu	37	chr10	108434901	108434901	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tttgctccaagatctcccttCatcaaaactcaacctaatga	3	13	4	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	10	108434901	108434901	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	missense	c.1846	p.E616K	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	371	3	0.8	139	33	19.19	-	-	-	T	108434901	C	T	108434901	3	4	783	1	0	0	0	0	1	0	0	0	15019	835	29	2	1946	2	SORCS1	10	108434901	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	15796079	108434901	27099846	38	67513										
OR56A1	0	genome.wustl.edu	37	chr11	6048719	6048719	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	acgatgtccagcagggagagGaggctgagcaggtagtacag	17	7	0	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	11	6048719	6048719	G	C	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	0.072	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	339	1	0.29	617	144	18.9	-	-	-	C	6048719	G	C	6048719	2	2	783	1	0	0	0	0	0	0	0	1	11206	1161	41	2		2	OR56A1	11	6048719	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		6048719	128957797	39	67514										
OR9G4	0	genome.wustl.edu	37	chr11	56510936	56510936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gtaggctacaacacaggaaaAaaacagctgagccccacatc	8	12	0	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	11	56510936	56510936	A	G	SNP	OR9G4	ENST00000302957	human	ensembl	69_37n	-1	known	missense	c.352	p.F118L	0.999	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9G4	HGNC	ENSG00000172457	95	0	0	123	32	20.65	-	-	-	G	56510936	A	G	56510936	3	3	783	1	0	0	0	0	1	0	0	0	11324	14	1	5	634	5	OR9G4	11	56510936	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09	50462217	56510936	78495580	40	67515										
C11orf84	0	genome.wustl.edu	37	chr11	63585290	63585290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctcgcagtgacccaacaggaGaagaccccaccgcctagacc	9	17	0	4			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	11	63585290	63585290	G	A	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	1	known	silent	c.141	p.E47	0.953	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	78	0	0	205	59	22.26	-	-	-	A	63585290	G	A	63585290	2	1	783	1	0	0	0	0	0	0	0	1	1678	933	33	2		2	C11orf84	11	63585290	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	7074354	63585290	71421226	41	67516										
KLRC1	0	genome.wustl.edu	37	chr12	10602545	10602545	+	Frame_Shift_Del	DEL	T	T	-													0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttgtattcagggaagaattgTtgtgcctctgtattaatgta							TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	12	10602545	10602545	T	-	DEL	KLRC1	ENST00000359151	human	ensembl	69_37n	-1	known	frame_shift_del	c.305	p.N102fs	0.004	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC1	HGNC	ENSG00000134545	92	0	0	12	2	14.29	-	-	-	-	10602545	T	-	10602545	7	5	783	1	0	1	0	1	0	0	0	0	8468	1725	60	0	412	0	KLRC1	12	10602545	Frame_Shift_Del	DEL	T	TCGA-E2-A15M-01A-11D-A12B-09		10602545	123249350	42	67517										
IPO8	0	genome.wustl.edu	37	chr12	30823923	30823923	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tgtggcttcatctgcttccaGgttatagaatgaaccacccc	8	12	2	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	12	30823923	30823923	G	T	SNP	IPO8	ENST00000256079	human	ensembl	69_37n	-1	known	silent	c.1017	p.T339	0.979	pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Exportin/Importin_Cse1-like,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704	520	2	0.38	185	37	16.52	-	-	-	T	30823923	G	T	30823923	2	4	783	1	0	0	0	0	0	0	0	1	7852	987	35	4		4	IPO8	12	30823923	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	20221378	30823923	103027972	43	67518										
OR6C70	0	genome.wustl.edu	37	chr12	55862990	55862990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttcaacaagttgtattacttGtctgaagcagaaaatatctt	6	6	3	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	12	55862990	55862990	G	T	SNP	OR6C70	ENST00000327335	human	ensembl	69_37n	-1	known	missense	c.933	p.D311E	0.002	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954	97	0	0	46	9	16.36	-	-	-	T	55862990	G	T	55862990	3	4	783	1	0	0	0	0	1	0	0	0	11270	1368	48	4	7	4	OR6C70	12	55862990	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	25039067	55862990	77988905	44	67519										
TBX3	0	genome.wustl.edu	37	chr12	115114129	115114129	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	atggtttacctttgaggttcGatgtccctacagtggaggcg	13	8	0	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	12	115114129	115114129	G	C	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.1088	p.S363W	0.892	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	247	0	0	145	70	32.56	-	-	-	C	115114129	G	C	115114129	3	2	783	1	0	0	0	0	1	0	0	0	15754	1059	37	3	1155	3	TBX3	12	115114129	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	59251139	115114129	18737766	45	67520										
KSR2	0	genome.wustl.edu	37	chr12	118293372	118293372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tcctccaggctcagctggccGggggagatttcctagaggag	15	11	1	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	12	118293372	118293372	G	A	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.333	p.P111	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	138	0	0	192	106	35.33	-	-	-	A	118293372	G	A	118293372	2	1	783	1	0	0	0	0	0	0	0	1	8636	1103	39	1		1	KSR2	12	118293372	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	3179243	118293372	15558523	46	67521										
MIA2	0	genome.wustl.edu	37	chr14	39722059	39722059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cgaaaccatcagtagacaccGaagggcctgctctggtggag	13	11	2	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	14	39722059	39722059	G	A	SNP	MIA2	ENST00000280082	human	ensembl	69_37n	1	novel	missense	c.1675	p.E559K	0.037	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526	412	1	0.24	138	53	27.75	-	-	-	A	39722059	G	A	39722059	3	1	783	1	0	0	0	0	1	0	0	0	9635	1059	37	1	1693	1	MIA2	14	39722059	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		39722059	67627481	47	67522										
KCNH5	0	genome.wustl.edu	37	chr14	63174802	63174802	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttcattcttattgggctgttGactttgagacatttttggtc	9	6	2	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	14	63174802	63174802	G	A	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	silent	c.2391	p.V797	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	297	0	0	365	49	11.84	-	-	-	A	63174802	G	A	63174802	2	1	783	1	0	0	0	0	0	0	0	1	8089	1277	45	2		2	KCNH5	14	63174802	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	23452743	63174802	44174738	48	67523										
TRPM7	0	genome.wustl.edu	37	chr15	50905926	50905926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttggtcggtagggctgtgctGtcttaatgaaatggttatgc	14	5	1	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	15	50905926	50905926	G	C	SNP	TRPM7	ENST00000313478	human	ensembl	69_37n	-1	known	missense	c.1748	p.T583R	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	421	1	0.24	172	38	18.1	-	-	-	C	50905926	G	C	50905926	3	2	783	1	0	0	0	0	1	0	0	0	16687	1377	48	4	3949	4	TRPM7	15	50905926	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		50905926	51625466	49	67524										
PLIN1	0	genome.wustl.edu	37	chr15	90210242	90210242	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tctgatagggacatggccctCcccttggttgaggagacagc	13	11	1	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	15	90210242	90210242	C	G	SNP	PLIN1	ENST00000300055	human	ensembl	69_37n	-1	known	silent	c.1134	p.G378	0.007	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	50	0	0	79	30	27.52	-	-	-	G	90210242	C	G	90210242	2	3	783	1	0	0	0	0	0	0	0	1	12163	842	30	2		2	PLIN1	15	90210242	Silent	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	39304316	90210242	12321150	50	67525										
BFAR	0	genome.wustl.edu	37	chr16	14738316	14738316	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	attttcttgccactgctgctAcgacatcctggttaacccca	6	14	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	16	14738316	14738316	A	C	SNP	BFAR	ENST00000261658	human	ensembl	69_37n	1	known	missense	c.113	p.Y38S	0.998	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429	283	1	0.35	184	55	23.01	-	-	-	C	14738316	A	C	14738316	3	2	783	1	0	0	0	0	1	0	0	0	1419	391	14	5	115	5	BFAR	16	14738316	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09		14738316	75616437	51	67526										
CIRH1A	0	genome.wustl.edu	37	chr16	69202749	69202749	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	actcttcatggatcttttggAtgaaagaacactcgtggcag	10	8	3	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	16	69202749	69202749	A	C	SNP	CIRH1A	ENST00000314423	human	ensembl	69_37n	1	known	missense	c.1970	p.D657A	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	325	2	0.61	154	58	27.36	-	-	-	C	69202749	A	C	69202749	3	2	783	1	0	0	0	0	1	0	0	0	3463	333	12	5	2032	5	CIRH1A	16	69202749	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09	54464433	69202749	21152004	52	67527										
TP53	0	genome.wustl.edu	37	chr17	7578542	7578542	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ttggcaaaacatcttgttgaGggcaggggagtactgtagga	15	5	1	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	17	7578542	7578542	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.388	p.L130V	0.985	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	154	1	0.64	99	32	24.43	-	-	-	C	7578542	G	C	7578542	3	2	783	1	0	0	0	0	1	0	0	0	16477	1000	35	4	910	4	TP53	17	7578542	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		7578542	73616668	53	67528										
IFI35	0	genome.wustl.edu	37	chr17	41158967	41158967	+	Frame_Shift_Del	DEL	G	G	-													0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	caaacagacccgagacccatGtcagccccactggatgccgt							TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	17	41158967	41158967	G	-	DEL	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	frame_shift_del	c.3	p.M1fs	0.049	NULL	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	517	1	0.19	331	39	10.48	-	-	-	-	41158967	G	-	41158967	7	5	783	1	0	1	0	1	0	0	0	0	7570	1377	48	0	5	0	IFI35	17	41158967	Frame_Shift_Del	DEL	G	TCGA-E2-A15M-01A-11D-A12B-09	33580425	41158967	40036243	54	67529										
ZNF652	0	genome.wustl.edu	37	chr17	47376040	47376040	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gggttgtggctgtgttcaccAcagaaggaactggggtggct	17	7	1	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	635d491b-44f7-4467-adb0-941c2bd5d1f9	17	47376040	47376040	A	G	SNP	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	missense	c.1556	p.V519A	0.050	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	297	0	0	307	99	24.38	-	-	-	G	47376040	A	G	47376040	3	3	783	1	0	0	0	0	1	0	0	0	18161	159	6	5	268	5	ZNF652	17	47376040	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09	6217073	47376040	33819170	55	67530										
ACAA2	0	genome.wustl.edu	37	chr18	47329199	47329199	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	cgtaagctccaaagggcgttCgcttagcagcaactacaaac	9	12	0	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	18	47329199	47329199	C	A	SNP	ACAA2	ENST00000285093	human	ensembl	69_37n	-1	known	missense	c.41	p.R14L	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315	149	0	0	119	15	11.11	-	-	-	A	47329199	C	A	47329199	3	1	783	1	0	0	0	0	1	0	0	0	105	884	31	3	1188	3	ACAA2	18	47329199	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09		47329199	30748049	56	67531										
MUC16	0	genome.wustl.edu	37	chr19	9076968	9076968	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ccctcagagtctcaagccctAttgaaggagatgtgacagat	10	10	2	5			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	19	9076968	9076968	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.10478	p.I3493T	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	383	2	0.52	581	126	17.82	-	-	-	G	9076968	A	G	9076968	3	3	783	1	0	0	0	0	1	0	0	0	10045	449	16	5	33373	5	MUC16	19	9076968	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09		9076968	50052015	57	67532										
EPOR	0	genome.wustl.edu	37	chr19	11493879	11493879	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctcggtgaagcacagaagctCttcgggcccccgggccgcca	13	16	1	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	19	11493879	11493879	C	T	SNP	EPOR	ENST00000222139	human	ensembl	69_37n	-1	known	missense	c.145	p.E49K	0.002	pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,pirsf_Erythropoietin_rcpt	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Erythropoietin_rcpt,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266	33	0	0	85	14	14.14	-	-	-	T	11493879	C	T	11493879	3	4	783	1	0	0	0	0	1	0	0	0	5226	922	32	2	1409	2	EPOR	19	11493879	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	2416911	11493879	47635104	58	67533										
ZNF540	0	genome.wustl.edu	37	chr19	38102566	38102566	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ggcagaacaaaagtgagtttGagggtcaacagggacttaaa	13	5	1	3			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	19	38102566	38102566	G	C	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.385	p.E129Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	341	1	0.29	87	24	21.62	-	-	-	C	38102566	G	C	38102566	3	2	783	1	0	0	0	0	1	0	0	0	18071	1291	45	2	399	2	ZNF540	19	38102566	Missense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09	26608687	38102566	21026417	59	67534										
SIGLEC9	0	genome.wustl.edu	37	chr19	51629007	51629007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gtcccccctggacccctccaCcacccgctcctcggtgctca	7	23	1	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	19	51629007	51629007	C	T	SNP	SIGLEC9	ENST00000440804	human	ensembl	69_37n	1	known	missense	c.575	p.T192I	0.000	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC9	HGNC	ENSG00000129450	97	0	0	117	72	37.7	-	-	-	T	51629007	C	T	51629007	3	4	783	1	0	0	0	0	1	0	0	0	14404	507	18	4	581	4	SIGLEC9	19	51629007	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	13526441	51629007	7499976	60	67535										
NLRP7	0	genome.wustl.edu	37	chr19	55450823	55450823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctttggagactctgtcctggCggaggatgtctccgtccagg	14	11	2	1			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	19	55450823	55450823	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.1448	p.R483H	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	49	0	0	75	24	24.24	-	-	-	T	55450823	C	T	55450823	3	4	783	1	0	0	0	0	1	0	0	0	10554	768	27	1	1781	1	NLRP7	19	55450823	Missense_Mutation	SNP	C	TCGA-E2-A15M-01A-11D-A12B-09	3821816	55450823	3678160	61	67536										
LAMA5	0	genome.wustl.edu	37	chr20	60889977	60889977	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gctcagcttggccagcagctGgggcagcgtcttctccaggg	15	13	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	20	60889977	60889977	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	nonsense	c.8074	p.Q2692*	0.904	pfam_Laminin_II	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	50	0	0	121	53	30.29	-	-	-	A	60889977	G	A	60889977	4	1	783	1	0	0	0	0	0	1	0	0	8663	1357	47	4	3097	4	LAMA5	20	60889977	Nonsense_Mutation	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		60889977	2135543	62	67537										
ISX	0	genome.wustl.edu	37	chr22	35478527	35478527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	gcagaaggaaggaagagcaaGcggagggttcgtaccacctt	15	8	0	2			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	22	35478527	35478527	G	A	SNP	ISX	ENST00000308700	human	ensembl	69_37n	1	known	silent	c.246	p.K82	0.669	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	ISX	HGNC	ENSG00000175329	129	1	0.77	164	58	26.13	-	-	-	A	35478527	G	A	35478527	2	1	783	1	0	0	0	0	0	0	0	1	7919	962	34	4		4	ISX	22	35478527	Silent	SNP	G	TCGA-E2-A15M-01A-11D-A12B-09		35478527	15826039	63	67538										
DMD	0	genome.wustl.edu	37	chrX	31525555	31525555	+	Frame_Shift_Del	DEL	T	T	-													0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	aacatctgtgtgagcttcaaTttcaccttggaggtcctaca							TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	X	31525555	31525555	T	-	DEL	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	frame_shift_del	c.8233	p.I2745fs	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	794	1	0.13	533	61	10.22	-	-	-	-	31525555	T	-	31525555	7	5	783	1	0	1	0	1	0	0	0	0	4616	1493	52	0	3034	0	DMD	23	31525555	Frame_Shift_Del	DEL	T	TCGA-E2-A15M-01A-11D-A12B-09		31525555	123745005	64	67539										
WDR13	0	genome.wustl.edu	37	chrX	48458901	48458901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	tgtccacctcactggatgccAccatgcgcatctgggcctct	9	16	3	0			TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	X	48458901	48458901	A	G	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	missense	c.718	p.T240A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	46	0	0	112	40	25.64	-	-	-	G	48458901	A	G	48458901	3	3	783	1	0	0	0	0	1	0	0	0	17372	159	6	5	736	5	WDR13	23	48458901	Missense_Mutation	SNP	A	TCGA-E2-A15M-01A-11D-A12B-09	16933346	48458901	106811659	65	67540										
ATG4A	0	genome.wustl.edu	37	chrX	107396915	107396915	+	Frame_Shift_Del	DEL	G	G	-													0.227272727272727	15	0.00445980475646189	2.45054945054945	3.16686390532544	2.12944297082228	0.46609222478544	1	9	ctggaggagtttgatctggaGgaagattttgagattctgag							TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	06b28922-49b5-4633-a07b-c0bd51b2aee5	e71af20f-596d-4bad-8af3-4ded35614825	X	107396915	107396915	G	-	DEL	ATG4A	ENST00000372232	human	ensembl	69_37n	1	known	frame_shift_del	c.1170	p.E391fs	1.000	NULL	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	764	2	0.26	336	109	24.44	-	-	-	-	107396915	G	-	107396915	7	5	783	1	0	1	0	1	0	0	0	0	1100	991	35	0	1220	0	ATG4A	23	107396915	Frame_Shift_Del	DEL	G	TCGA-E2-A15M-01A-11D-A12B-09	58938014	107396915	47873645	66	67541										
UBE4B	0	genome.wustl.edu	37	chr1	10205077	10205077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gacaccgcgaaatgctgaagCgctgtaaaactcagcttaag	10	10	1	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	10205077	10205077	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.2443	p.R815C	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	116	0	0	19	37	66.07	-	-	-	T	10205077	C	T	10205077	3	4	784	1	0	0	0	0	1	0	0	0	16980	768	27	1	2513	1	UBE4B	1	10205077	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		10205077	239045544	1	67542										
MTOR	0	genome.wustl.edu	37	chr1	11188177	11188177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	agccactgtcagtgggtagaTgagggcctgagggaaaaaca	15	7	1	3			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	11188177	11188177	T	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.5917	p.I1973F	1.000	pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	225	0	0	43	66	60.55	-	-	-	A	11188177	T	A	11188177	3	1	784	1	0	0	0	0	1	0	0	0	10026	1464	51	5	1796	5	MTOR	1	11188177	Missense_Mutation	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09	983100	11188177	238062444	2	67543										
ECE1	0	genome.wustl.edu	37	chr1	21546502	21546502	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ggtgagccaggtgggcagcgGaagtgttctgagaactcctt	16	8	1	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	21546502	21546502	G	C	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.2259	p.F753L	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	182	0	0	34	53	60.92	-	-	-	C	21546502	G	C	21546502	3	2	784	1	0	0	0	0	1	0	0	0	4924	1165	41	2	57	2	ECE1	1	21546502	Missense_Mutation	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09	10358325	21546502	227704119	3	67544										
TACSTD2	0	genome.wustl.edu	37	chr1	59042071	59042071	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	aatagatgagcgtgcgctccAcctgcaggggttctccgcgc	13	13	1	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	59042071	59042071	A	C	SNP	TACSTD2	ENST00000371225	human	ensembl	69_37n	-1	known	missense	c.758	p.V253G	0.999	NULL	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	TACSTD2	HGNC	ENSG00000184292	37	0	0	25	5	16.67	-	-	-	C	59042071	A	C	59042071	3	2	784	1	0	0	0	0	1	0	0	0	15600	159	6	5	217	5	TACSTD2	1	59042071	Missense_Mutation	SNP	A	TCGA-E2-A15O-01A-11D-A10Y-09	37495569	59042071	190208550	4	67545										
COPA	0	genome.wustl.edu	37	chr1	160261650	160261650	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ttctagagtctctttgggcaGcttcttcctttctgtctcca	7	12	5	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	160261650	160261650	G	C	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.3244	p.L1082V	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	215	0	0	96	40	29.2	-	-	-	C	160261650	G	C	160261650	3	2	784	1	0	0	0	0	1	0	0	0	3757	962	34	4	473	4	COPA	1	160261650	Missense_Mutation	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09	101219579	160261650	88988971	5	67546										
SOAT1	0	genome.wustl.edu	37	chr1	179310278	179310278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ttccctattttctgtttcaaCattgggccactggctatagc	7	11	2	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	179310278	179310278	C	T	SNP	SOAT1	ENST00000367619	human	ensembl	69_37n	1	known	missense	c.613	p.H205Y	0.001	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	318	0	0	163	90	35.57	-	-	-	T	179310278	C	T	179310278	3	4	784	1	0	0	0	0	1	0	0	0	14999	478	17	4	635	4	SOAT1	1	179310278	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	19048628	179310278	69940343	6	67547										
SLC35F3	0	genome.wustl.edu	37	chr1	234367371	234367371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ctgaccttcaggaagttcgaCgcgcccttcaccctcacgtg	9	16	3	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	234367371	234367371	C	T	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	silent	c.492	p.D164	0.993	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	70	0	0	53	19	26.39	-	-	-	T	234367371	C	T	234367371	2	4	784	1	0	0	0	0	0	0	0	1	14679	535	19	1		1	SLC35F3	1	234367371	Silent	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	55057093	234367371	14883250	7	67548										
LOXL3	0	genome.wustl.edu	37	chr2	74762803	74762803	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	agtcatccccacagatgaggCcccagcgaaggggcccaggt	13	14	1	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	2	74762803	74762803	C	A	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.1328	p.G443V	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	45	0	0	24	19	44.19	-	-	-	A	74762803	C	A	74762803	3	1	784	1	0	0	0	0	1	0	0	0	8967	739	26	4	961	4	LOXL3	2	74762803	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		74762803	168436570	8	67549										
STAG1	0	genome.wustl.edu	37	chr3	136078054	136078054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tccaaatgtaagggcaaagcGacgtgccagttctttaatgc	10	9	1	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	136078054	136078054	G	A	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.2872	p.R958C	0.998	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	167	0	0	35	65	65	-	-	-	A	136078054	G	A	136078054	3	1	784	1	0	0	0	0	1	0	0	0	15333	1058	37	1	936	1	STAG1	3	136078054	Missense_Mutation	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09		136078054	61944376	9	67550										
MCCC1	0	genome.wustl.edu	37	chr3	182817227	182817228	+	Frame_Shift_Ins	INS	-	-	T													0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	caccgcagaggccgccgccaINStgtccctggagcccggccac							TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	182817227	182817228	-	T	INS	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.283:0.272	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	12	0	0	5	5	50	-	-	-	T	182817228	-	T	182817227	7	5	784	1	0	1	1	0	0	0	0	0	9445	217	8	0	2251	0	MCCC1	3	182817227	Frame_Shift_Ins	INS	-	TCGA-E2-A15O-01A-11D-A10Y-09	46739173	182817227	15205203	10	67551										
HMGB2	0	genome.wustl.edu	37	chr4	174254765	174254765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	aagaaggcgtacgaggacatTttgccccgcggcttgttggg	15	9	0	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	4	174254765	174254765	T	A	SNP	HMGB2	ENST00000296503	human	ensembl	69_37n	-1	known	missense	c.36	p.K12N	0.941	superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB2	HGNC	ENSG00000164104	129	0	0	87	30	25.64	-	-	-	A	174254765	T	A	174254765	3	1	784	1	0	0	0	0	1	0	0	0	7277	1838	64	5	609	5	HMGB2	4	174254765	Missense_Mutation	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09		174254765	16899511	11	67552										
MAP3K1	0	genome.wustl.edu	37	chr5	56160578	56160579	+	Frame_Shift_Del	DEL	CA	CA	-													0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	aagtttcagagtggcagaatCacaccaccccgaagagcccc							TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	56160578	56160579	CA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.852_853	p.P286fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	110	0	0	66	30	31.25	-	-	-	-	56160579	CA	-	56160578	7	5	784	1	0	1	0	1	0	0	0	0	9314	816	29	0	866	0	MAP3K1	5	56160578	Frame_Shift_Del	DEL	CA	TCGA-E2-A15O-01A-11D-A10Y-09		56160578	124754682	12	67553										
CHD1	0	genome.wustl.edu	37	chr5	98236686	98236686	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tgcttggcgacgagaacttcTtttatcattatcataatctt	6	8	4	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	98236686	98236686	T	G	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	silent	c.688	p.R230	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	376	0	0	200	78	27.96	-	-	-	G	98236686	T	G	98236686	2	3	784	1	0	0	0	0	0	0	0	1	3352	1617	56	5		5	CHD1	5	98236686	Silent	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09	42076108	98236686	82678574	13	67554										
PCDHA3	0	genome.wustl.edu	37	chr5	140182767	140182767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tgaaccctcattgaccgccaCggccactgtgctggtgtcgc	11	15	1	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	140182767	140182767	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.1985	p.T662M	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	50	0	0	20	23	53.49	-	-	-	T	140182767	C	T	140182767	3	4	784	1	0	0	0	0	1	0	0	0	11598	536	19	1	1987	1	PCDHA3	5	140182767	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	41946081	140182767	40732493	14	67555										
TCOF1	0	genome.wustl.edu	37	chr5	149773041	149773041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ctcagtttcctctactctggCcgccaaagatgacccagatg	8	14	3	3			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	149773041	149773041	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	missense	c.3818	p.A1273V	0.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	156	0	0	83	50	37.59	-	-	-	T	149773041	C	T	149773041	3	4	784	1	0	0	0	0	1	0	0	0	15803	739	26	4	3822	4	TCOF1	5	149773041	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	9590274	149773041	31142219	15	67556										
HNRNPH1	0	genome.wustl.edu	37	chr5	179044055	179044055	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tcctagcatttggctaccgtAagcaccaccgcttgctcctg	8	15	0	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	179044055	179044055	A	T	SNP	HNRNPH1	ENST00000356731	human	ensembl	69_37n	-1	known	missense	c.1114	p.Y372N	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045	268	0	0	91	63	40.91	-	-	-	T	179044055	A	T	179044055	3	4	784	1	0	0	0	0	1	0	0	0	7317	362	13	5	251	5	HNRNPH1	5	179044055	Missense_Mutation	SNP	A	TCGA-E2-A15O-01A-11D-A10Y-09	29271014	179044055	1871205	16	67557										
BTNL8	0	genome.wustl.edu	37	chr5	180377233	180377233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	taaatccccgttttatcagcGtcttccccaggaccccacct	5	17	2	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	180377233	180377233	G	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	1	known	missense	c.1192	p.V398I	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	162	0	0	35	101	74.26	-	-	-	A	180377233	G	A	180377233	3	1	784	1	0	0	0	0	1	0	0	0	1576	1145	40	1	1378	1	BTNL8	5	180377233	Missense_Mutation	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09	1333178	180377233	538027	17	67558										
CUL7	0	genome.wustl.edu	37	chr6	43014812	43014812	+	Frame_Shift_Del	DEL	G	G	-													0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gtccctgctcactgaggtcaGgcggtgcaggaagaaaatca							TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	6	43014812	43014812	G	-	DEL	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	frame_shift_del	c.2455	p.L819fs	1.000	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	62	0	0	43	13	23.21	-	-	-	-	43014812	G	-	43014812	7	5	784	1	0	1	0	1	0	0	0	0	4091	991	35	0	2961	0	CUL7	6	43014812	Frame_Shift_Del	DEL	G	TCGA-E2-A15O-01A-11D-A10Y-09		43014812	128100255	18	67559										
C7orf23	0	genome.wustl.edu	37	chr7	86825961	86825961	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ccttggcagcctcaccttccCacatcatggaagtacaggtt	8	14	2	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	7	86825961	86825961	C	T	SNP	C7orf23	ENST00000257637	human	ensembl	69_37n	-1	known	silent	c.348	p.V116	1.000	pfam_DUF2678	pfam_DUF2678	-	no_errors	C7orf23	HGNC	ENSG00000135185	146	0	0	82	56	40.58	-	-	-	T	86825961	C	T	86825961	2	4	784	1	0	0	0	0	0	0	0	1	2402	581	21	4		4	C7orf23	7	86825961	Silent	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		86825961	72312702	19	67560										
FER1L6	0	genome.wustl.edu	37	chr8	125047696	125047696	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	atctaacctgctctaccaagGtagggtccccactgggcaaa	9	13	2	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	8	125047696	125047696	G	T	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814	83	0	0	92	34	26.98	-	-	-	T	125047696	G	T	125047696	5	4	784	1	0	0	0	0	0	0	1	0	5861	1275	44	4	2535	4	FER1L6	8	125047696	Splice_Site	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09		125047696	21316326	20	67561										
RBM19	0	genome.wustl.edu	37	chr12	114386694	114386694	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tgctggtgtagggcaggttcCgtacaaagagccttccggat	14	9	0	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	12	114386694	114386694	C	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.1220	p.R407L	0.701	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	161	0	0	164	48	22.64	-	-	-	A	114386694	C	A	114386694	3	1	784	1	0	0	0	0	1	0	0	0	13204	652	23	3	1722	3	RBM19	12	114386694	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		114386694	19465201	21	67562										
NEK5	0	genome.wustl.edu	37	chr13	52684534	52684534	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tgccaccattccgttcttgcTaagaaaaatgttctataaat	5	9	2	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	13	52684534	52684534	T	C	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.409	p.S137G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	417	0	0	72	107	59.78	-	-	-	C	52684534	T	C	52684534	3	2	784	1	0	0	0	0	1	0	0	0	10399	1522	53	5	1781	5	NEK5	13	52684534	Missense_Mutation	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09		52684534	62485344	22	67563										
SERPINA5	0	genome.wustl.edu	37	chr14	95053768	95053768	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gcctcccttcaccgccaccaCccccgggagatgaagaagag	10	17	1	4			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	14	95053768	95053768	C	A	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	1	known	missense	c.69	p.H23Q	0.000	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	61	0	0	26	15	36.59	-	-	-	A	95053768	C	A	95053768	3	1	784	1	0	0	0	0	1	0	0	0	14180	506	18	4	71	4	SERPINA5	14	95053768	Missense_Mutation	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		95053768	12295772	23	67564										
GPR179	0	genome.wustl.edu	37	chr17	36491508	36491508	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	tatgatggtgccgtagacgaTggcaaaacccagcagccgca	12	11	0	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	36491508	36491508	T	C	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.1372	p.I458V	0.834	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	104	0	0	55	21	27.63	-	-	-	C	36491508	T	C	36491508	3	2	784	1	0	0	0	0	1	0	0	0	6724	1464	51	5	5755	5	GPR179	17	36491508	Missense_Mutation	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09		36491508	44703702	24	67565										
ACLY	0	genome.wustl.edu	37	chr17	40042364	40042364	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	cttggcttcccagctgattaCctgtccccaccaatggccac	7	17	0	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	40042364	40042364	C	T	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	splice_site	c.2072+1	e17+1	1.000	-	-	-	no_errors	ACLY	HGNC	ENSG00000131473	82	0	0	50	33	39.76	-	-	-	T	40042364	C	T	40042364	5	4	784	1	0	0	0	0	0	0	1	0	143	521	18	4	1280	4	ACLY	17	40042364	Splice_Site	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	3550856	40042364	41152846	25	67566										
KISS1R	0	genome.wustl.edu	37	chr19	918593	918593	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	ctcctgtgctgcgtccccttCacggccctgctgtacccgct	9	19	1	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	918593	918593	C	T	SNP	KISS1R	ENST00000234371	human	ensembl	69_37n	1	known	silent	c.294	p.F98	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_KiSS_1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	KISS1R	HGNC	ENSG00000116014	38	0	0	8	5	38.46	-	-	-	T	918593	C	T	918593	2	4	784	1	0	0	0	0	0	0	0	1	8381	825	29	2		2	KISS1R	19	918593	Silent	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09		918593	58210390	26	67567										
ZNF492	0	genome.wustl.edu	37	chr19	22847203	22847203	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gcaaaccttactacacataaGagaattcatactggagagaa	7	8	1	2			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	22847203	22847203	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	1	known	silent	c.732	p.K244	0.957	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	24	0	0	20	4	16.67	-	-	-	A	22847203	G	A	22847203	2	1	784	1	0	0	0	0	0	0	0	1	18039	933	33	2		2	ZNF492	19	22847203	Silent	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09	21928610	22847203	36281780	27	67568										
LRRC4B	0	genome.wustl.edu	37	chr19	51021653	51021653	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gtggtgttgccggctgagttCgtcaccatgcacgtgtactg	14	10	1	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	51021653	51021653	C	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.1317	p.T439	0.999	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	40	0	0	23	8	25.81	-	-	-	A	51021653	C	A	51021653	2	1	784	1	0	0	0	0	0	0	0	1	9073	871	31	3		3	LRRC4B	19	51021653	Silent	SNP	C	TCGA-E2-A15O-01A-11D-A10Y-09	28174450	51021653	8107330	28	67569										
KIAA1755	0	genome.wustl.edu	37	chr20	36869418	36869418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	cctcaaggacattcatgtagGagccttggggcggcctttct	12	11	3	0			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	20	36869418	36869418	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.1115	p.S372F	0.037	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	41	0	0	30	12	28.57	-	-	-	A	36869418	G	A	36869418	3	1	784	1	0	0	0	0	1	0	0	0	8309	1174	41	2	2535	2	KIAA1755	20	36869418	Missense_Mutation	SNP	G	TCGA-E2-A15O-01A-11D-A10Y-09		36869418	26156102	29	67570										
LAMA5	0	genome.wustl.edu	37	chr20	60886146	60886147	+	Frame_Shift_Del	DEL	TG	TG	-													0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	gaggacgtgcatggagagacTgggcctggaagcggagctgg							TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	20	60886146	60886147	TG	-	DEL	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	frame_shift_del	c.10093_10092	p.S3367fs	0.033:0.035	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	26	0	0	26	7	20.59	-	-	-	-	60886147	TG	-	60886146	7	5	784	1	0	1	0	1	0	0	0	0	8663	1580	55	0	1022	0	LAMA5	20	60886146	Frame_Shift_Del	DEL	TG	TCGA-E2-A15O-01A-11D-A10Y-09	24016728	60886146	2139374	30	67571										
CABIN1	0	genome.wustl.edu	37	chr22	24463095	24463095	+	Frame_Shift_Del	DEL	C	C	-													0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	acacctggagtttatgacttCcattcctgagaggccagccc							TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	22	24463095	24463095	C	-	DEL	CABIN1	ENST00000263119	human	ensembl	69_37n	1	known	frame_shift_del	c.2195	p.I733fs	0.996	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	101	0	0	22	26	54.17	-	-	-	-	24463095	C	-	24463095	7	5	784	1	0	1	0	1	0	0	0	0	2553	855	30	0	2253	0	CABIN1	22	24463095	Frame_Shift_Del	DEL	C	TCGA-E2-A15O-01A-11D-A10Y-09		24463095	26841471	31	67572										
MAGEB1	0	genome.wustl.edu	37	chrX	30268880	30268880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.848714113012736	1.18253968253968	0	1.37962962962963	0.333333333333333	0.930327025915261	0	aaatgccaaggtgaggaaaaTgcaagtttctcccaggccac	10	10	1	1			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	X	30268880	30268880	T	C	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	silent	c.270	p.N90	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	72	0	0	42	15	26.32	-	-	-	C	30268880	T	C	30268880	2	2	784	1	0	0	0	0	0	0	0	1	9243	1461	51	5		5	MAGEB1	23	30268880	Silent	SNP	T	TCGA-E2-A15O-01A-11D-A10Y-09		30268880	125001680	32	67573										
PRDM2	0	genome.wustl.edu	37	chr1	14107659	14107661	+	In_Frame_Del	DEL	TGT	TGT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	cagtctgctgctgaacaggaTgttgttgttcaggaaacatt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	1	14107659	14107661	TGT	-	DEL	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	in_frame_del	c.3369_3371	p.V1126in_frame_del	0.597:0.363:0.092	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	130	0	0	109	40	26.67	-	-	-	-	14107661	TGT	-	14107659	7	5	785	1	0	1	0	1	0	0	0	0	12539	1461	51	0	3395	0	PRDM2	1	14107659	In_Frame_Del	DEL	TGT	TCGA-E2-A15P-01A-11D-A10Y-09		14107659	235142962	1	67574										
SPEN	0	genome.wustl.edu	37	chr1	16257842	16257842	+	Frame_Shift_Del	DEL	C	C	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	agctggaacaagtagacctgCccccaggagcagaccccgat							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	1	16257842	16257842	C	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.5107	p.P1704fs	0.001	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	48	0	0	65	8	10.81	-	-	-	-	16257842	C	-	16257842	7	5	785	1	0	1	0	1	0	0	0	0	15129	739	26	0	5149	0	SPEN	1	16257842	Frame_Shift_Del	DEL	C	TCGA-E2-A15P-01A-11D-A10Y-09	2150183	16257842	232992779	2	67575										
LEPRE1	0	genome.wustl.edu	37	chr1	43212402	43212403	+	Frame_Shift_Del	DEL	GA	GA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tgggcttcgattcactgcctGagagagactcttgtgcaggt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	1	43212402	43212403	GA	-	DEL	LEPRE1	ENST00000296388	human	ensembl	69_37n	-1	known	frame_shift_del	c.2177_2176	p.S726fs	0.001:0.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	94	0	0	128	40	23.81	-	-	-	-	43212403	GA	-	43212402	7	5	785	1	0	1	0	1	0	0	0	0	8783	1294	45	0	37	0	LEPRE1	1	43212402	Frame_Shift_Del	DEL	GA	TCGA-E2-A15P-01A-11D-A10Y-09	26954560	43212402	206038219	3	67576										
WDR47	0	genome.wustl.edu	37	chr1	109525305	109525305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	aaatgttacaatcccctgctCcagcacttattaaaatagct	4	11	0	0			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	1	109525305	109525305	C	T	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.2216	p.G739E	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	97	0	0	58	38	39.58	-	-	-	T	109525305	C	T	109525305	3	4	785	1	0	0	0	0	1	0	0	0	17397	855	30	2	583	2	WDR47	1	109525305	Missense_Mutation	SNP	C	TCGA-E2-A15P-01A-11D-A10Y-09	66312903	109525305	139725316	4	67577										
RTN4	0	genome.wustl.edu	37	chr2	55214698	55214699	+	Frame_Shift_Del	DEL	CA	CA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tatatcctaaagctgatggtCacagagagcagggccaaggc							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	55214698	55214699	CA	-	DEL	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	frame_shift_del	c.3150_3149	p.V1050fs	1.000:1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	147	0	0	148	51	25.5	-	-	-	-	55214699	CA	-	55214698	7	5	785	1	0	1	0	1	0	0	0	0	13814	813	29	0	452	0	RTN4	2	55214698	Frame_Shift_Del	DEL	CA	TCGA-E2-A15P-01A-11D-A10Y-09		55214698	187984675	5	67578										
TIA1	0	genome.wustl.edu	37	chr2	70475537	70475538	+	Frame_Shift_Del	DEL	AG	AG	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	catcgctgccccagactcacAgagtcttgggcatctcgtcc							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	70475537	70475538	AG	-	DEL	TIA1	ENST00000433529	human	ensembl	69_37n	-1	known	frame_shift_del	c.26_25	p.L9fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	23	0	0	41	19	31.67	-	-	-	-	70475538	AG	-	70475537	7	5	785	1	0	1	0	1	0	0	0	0	15982	202	7	0	1186	0	TIA1	2	70475537	Frame_Shift_Del	DEL	AG	TCGA-E2-A15P-01A-11D-A10Y-09	15260839	70475537	172723836	6	67579										
SEMA4F	0	genome.wustl.edu	37	chr2	74900877	74900879	+	In_Frame_Del	DEL	CTT	CTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gatggagacgacgaaatctaCttcttctttacggagacttc							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	74900877	74900879	CTT	-	DEL	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	in_frame_del	c.744_746	p.F251in_frame_del	1.000:1.000:1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	44	0	0	66	21	24.14	-	-	-	-	74900879	CTT	-	74900877	7	5	785	1	0	1	0	1	0	0	0	0	14123	576	20	0	770	0	SEMA4F	2	74900877	In_Frame_Del	DEL	CTT	TCGA-E2-A15P-01A-11D-A10Y-09	4425340	74900877	168298496	7	67580										
ZNF2	0	genome.wustl.edu	37	chr2	95847302	95847302	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	aaagccttctttgaccgttcGtccctaactgtccatcagcg	7	14	2	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	95847302	95847302	G	A	SNP	ZNF2	ENST00000340539	human	ensembl	69_37n	1	known	silent	c.729	p.S243	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067	111	0	0	93	43	31.62	-	-	-	A	95847302	G	A	95847302	2	1	785	1	0	0	0	0	0	0	0	1	17856	1132	40	1		1	ZNF2	2	95847302	Silent	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09	20946425	95847302	147352071	8	67581										
MYO3B	0	genome.wustl.edu	37	chr2	171240240	171240240	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ttttccagactttatcatggGgtgaaacgcgcctccaatcc	8	12	1	2			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	171240240	171240240	G	A	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	silent	c.1233	p.G411	0.982	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	194	0	0	190	57	23.08	-	-	-	A	171240240	G	A	171240240	2	1	785	1	0	0	0	0	0	0	0	1	10149	1219	43	4		4	MYO3B	2	171240240	Silent	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09	75392938	171240240	71959133	9	67582										
SP3	0	genome.wustl.edu	37	chr2	174819671	174819674	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tctatagagttcactgtaacTgtttgtagatttggcaactg							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	174819671	174819674	TGTT	-	DEL	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	frame_shift_del	c.1569_1566	p.T523fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	88	0	0	99	23	18.85	-	-	-	-	174819674	TGTT	-	174819671	7	5	785	1	0	1	0	1	0	0	0	0	15054	1567	55	0	792	0	SP3	2	174819671	Frame_Shift_Del	DEL	TGTT	TCGA-E2-A15P-01A-11D-A10Y-09	3579431	174819671	68379702	10	67583										
TTN	0	genome.wustl.edu	37	chr2	179442017	179442017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gcagtgatggtatattcaccCgcatcttttctagtggcata	9	9	3	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	2	179442017	179442017	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.61341	p.A20447	0.909	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	197	0	0	158	65	29.02	-	-	-	T	179442017	C	T	179442017	2	4	785	1	0	0	0	0	0	0	0	1	16832	639	23	1		1	TTN	2	179442017	Silent	SNP	C	TCGA-E2-A15P-01A-11D-A10Y-09	4622346	179442017	63757356	11	67584										
EPM2AIP1	0	genome.wustl.edu	37	chr3	37033943	37033945	+	In_Frame_Del	DEL	AGA	AGA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gagtcaggttgattatggtcAgaagatcttcttgcacctcc							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	37033943	37033945	AGA	-	DEL	EPM2AIP1	ENST00000322716	human	ensembl	69_37n	-1	known	in_frame_del	c.626_624	p.L209in_frame_del	1.000:0.898:0.245	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567	30	0	0	41	13	24.07	-	-	-	-	37033945	AGA	-	37033943	7	5	785	1	0	1	0	1	0	0	0	0	5221	188	7	0	1201	0	EPM2AIP1	3	37033943	In_Frame_Del	DEL	AGA	TCGA-E2-A15P-01A-11D-A10Y-09		37033943	160988487	12	67585										
KBTBD8	0	genome.wustl.edu	37	chr3	67058478	67058480	+	In_Frame_Del	DEL	ATC	ATC	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	catagctggaacctgtggaaAtcatcaacgtatgtttactg							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	67058478	67058480	ATC	-	DEL	KBTBD8	ENST00000417314	human	ensembl	69_37n	1	known	in_frame_del	c.1475_1477	p.H493in_frame_del	1.000:1.000:1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376	107	0	0	91	35	27.78	-	-	-	-	67058480	ATC	-	67058478	7	5	785	1	0	1	0	1	0	0	0	0	8053	101	4	0	1489	0	KBTBD8	3	67058478	In_Frame_Del	DEL	ATC	TCGA-E2-A15P-01A-11D-A10Y-09	30024535	67058478	130963952	13	67586										
C3orf38	0	genome.wustl.edu	37	chr3	88205221	88205223	+	In_Frame_Del	DEL	AGA	AGA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gttgattttcgtcgcctaggAgaagaattctgtcattggtt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	88205221	88205223	AGA	-	DEL	C3orf38	ENST00000318887	human	ensembl	69_37n	1	known	in_frame_del	c.426_428	p.E144in_frame_del	0.918:0.917:0.998	NULL	NULL	-	no_errors	C3orf38	HGNC	ENSG00000179021	99	0	0	78	29	27.1	-	-	-	-	88205223	AGA	-	88205221	7	5	785	1	0	1	0	1	0	0	0	0	2248	291	11	0	436	0	C3orf38	3	88205221	In_Frame_Del	DEL	AGA	TCGA-E2-A15P-01A-11D-A10Y-09	21146743	88205221	109817209	14	67587										
TBL1XR1	0	genome.wustl.edu	37	chr3	176756187	176756189	+	In_Frame_Del	DEL	TGT	TGT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tgtactacaagaagcaaaggTgttgttgctctgccaatcaa							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	176756187	176756189	TGT	-	DEL	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	in_frame_del	c.961_959	p.N320in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	270	0	0	200	67	24.81	-	-	-	-	176756189	TGT	-	176756187	7	5	785	1	0	1	0	1	0	0	0	0	15735	1696	59	0	607	0	TBL1XR1	3	176756187	In_Frame_Del	DEL	TGT	TCGA-E2-A15P-01A-11D-A10Y-09	88550966	176756187	21266243	15	67588										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	67	27	28.42	-	-	-	A	178936082	G	A	178936082	3	1	785	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09	2179895	178936082	19086348	16	67589										
DLG1	0	genome.wustl.edu	37	chr3	196846394	196846396	+	In_Frame_Del	DEL	AGA	AGA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	acatggttatcaacaggctgAgaagaagcttcaaaataaac							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	3	196846394	196846396	AGA	-	DEL	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	in_frame_del	c.1272_1270	p.S424in_frame_del	1.000:1.000:1.000	pfam_PDZ_assoc,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	85	0	0	78	19	19.59	-	-	-	-	196846396	AGA	-	196846394	7	5	785	1	0	1	0	1	0	0	0	0	4590	291	11	0	1602	0	DLG1	3	196846394	In_Frame_Del	DEL	AGA	TCGA-E2-A15P-01A-11D-A10Y-09	17910312	196846394	1176036	17	67590										
ZNF518B	0	genome.wustl.edu	37	chr4	10445214	10445214	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gcaacctgaaaaattgaaggAtccttgagacagcggctagg	12	8	0	3			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	4	10445214	10445214	A	C	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	missense	c.2739	p.D913E	0.113	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	72	0	0	81	34	29.57	-	-	-	C	10445214	A	C	10445214	3	2	785	1	0	0	0	0	1	0	0	0	18059	330	12	5	489	5	ZNF518B	4	10445214	Missense_Mutation	SNP	A	TCGA-E2-A15P-01A-11D-A10Y-09		10445214	180709062	18	67591										
BRIX1	0	genome.wustl.edu	37	chr5	34925580	34925580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gaaaaatgaaacagaggatgGacagtgggaaaacaaaataa	11	3	0	2			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	5	34925580	34925580	G	T	SNP	BRIX1	ENST00000336767	human	ensembl	69_37n	1	known	missense	c.1042	p.D348Y	0.706	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	54	0	0	62	22	26.19	-	-	-	T	34925580	G	T	34925580	3	4	785	1	0	0	0	0	1	0	0	0	1523	1174	41	2	1080	2	BRIX1	5	34925580	Missense_Mutation	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09		34925580	145989680	19	67592										
COL4A3BP	0	genome.wustl.edu	37	chr5	74706907	74706909	+	In_Frame_Del	DEL	TTC	TTC	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	atttttatatgcttcctctgTtcttcttttcttctcagttt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	5	74706907	74706909	TTC	-	DEL	COL4A3BP	ENST00000380494	human	ensembl	69_37n	-1	known	in_frame_del	c.1243_1241	p.R414in_frame_del	0.011:0.227:1.000	NULL	pfam_START_lipid-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd	-	no_errors	COL4A3BP	HGNC	ENSG00000113163	220	0	0	217	58	20.79	-	-	-	-	74706909	TTC	-	74706907	7	5	785	1	0	1	0	1	0	0	0	0	3722	1725	60	0	1055	0	COL4A3BP	5	74706907	In_Frame_Del	DEL	TTC	TCGA-E2-A15P-01A-11D-A10Y-09	39781327	74706907	106208353	20	67593										
ZNF300	0	genome.wustl.edu	37	chr5	150275009	150275009	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tgattttaccactgtgtgaaTtctctggtgtacagttagtt	9	6	1	2			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	5	150275009	150275009	T	A	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.1840	p.I614F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	110	0	0	102	52	33.77	-	-	-	A	150275009	T	A	150275009	3	1	785	1	0	0	0	0	1	0	0	0	17927	1493	52	5	26	5	ZNF300	5	150275009	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09	75568102	150275009	30640251	21	67594										
ADCY1	0	genome.wustl.edu	37	chr7	45753497	45753497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ccttcagggcagacgtccccCcgtgtgccccatgcctggcg	12	18	1	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	7	45753497	45753497	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	missense	c.3263	p.P1088L	0.982	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	53	0	0	39	31	44.29	-	-	-	T	45753497	C	T	45753497	3	4	785	1	0	0	0	0	1	0	0	0	292	623	22	4	3341	4	ADCY1	7	45753497	Missense_Mutation	SNP	C	TCGA-E2-A15P-01A-11D-A10Y-09		45753497	113385166	22	67595										
CYP3A7	0	genome.wustl.edu	37	chr7	99306769	99306769	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	taaacatcccattgatttcaAcatcttttttgcagaccctc	3	12	2	2			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	7	99306769	99306769	A	G	SNP	CYP3A7	ENST00000336374	human	ensembl	69_37n	-1	known	missense	c.1142	p.V381A	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	421	1	0.24	415	65	13.51	-	-	-	G	99306769	A	G	99306769	3	3	785	1	0	0	0	0	1	0	0	0	4212	43	2	5	381	5	CYP3A7	7	99306769	Missense_Mutation	SNP	A	TCGA-E2-A15P-01A-11D-A10Y-09	53553272	99306769	59831894	23	67596										
CYP3A4	0	genome.wustl.edu	37	chr7	99358590	99358592	+	In_Frame_Del	DEL	TTC	TTC	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	aaggatctatgttgtccttgTtcttcttgctgaatctggtt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	7	99358590	99358592	TTC	-	DEL	CYP3A4	ENST00000336411	human	ensembl	69_37n	-1	known	in_frame_del	c.1268_1266	p.K422in_frame_del	1.000:1.000:0.994	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868	606	0	0	473	133	21.95	-	-	-	-	99358592	TTC	-	99358590	7	5	785	1	0	1	0	1	0	0	0	0	4209	1725	60	0	251	0	CYP3A4	7	99358590	In_Frame_Del	DEL	TTC	TCGA-E2-A15P-01A-11D-A10Y-09	51821	99358590	59780073	24	67597										
TAS2R3	0	genome.wustl.edu	37	chr7	141464672	141464674	+	In_Frame_Del	DEL	CTT	CTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gccatcagaatcatcctttcCttcttctttctcttcttact							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	7	141464672	141464674	CTT	-	DEL	TAS2R3	ENST00000247879	human	ensembl	69_37n	1	known	in_frame_del	c.714_716	p.F241in_frame_del	0.988:0.967:0.031	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362	132	0	0	148	36	19.35	-	-	-	-	141464674	CTT	-	141464672	7	5	785	1	0	1	0	1	0	0	0	0	15664	668	24	0	716	0	TAS2R3	7	141464672	In_Frame_Del	DEL	CTT	TCGA-E2-A15P-01A-11D-A10Y-09	42106082	141464672	17673991	25	67598										
NUDT18	0	genome.wustl.edu	37	chr8	21965179	21965182	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tgtgcccactaacacccacaCtgtctgggcgctggtaaagg							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	8	21965179	21965182	CTGT	-	DEL	NUDT18	ENST00000309188	human	ensembl	69_37n	-1	known	frame_shift_del	c.604_601	p.T201fs	0.328:0.160:0.808:0.980	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_errors	NUDT18	HGNC	ENSG00000173566	100	0	0	94	32	25.4	-	-	-	-	21965182	CTGT	-	21965179	7	5	785	1	0	1	0	1	0	0	0	0	10808	565	20	0	371	0	NUDT18	8	21965179	Frame_Shift_Del	DEL	CTGT	TCGA-E2-A15P-01A-11D-A10Y-09		21965179	124398843	26	67599										
SQLE	0	genome.wustl.edu	37	chr8	126030304	126030306	+	In_Frame_Del	DEL	TTC	TTC	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	attacctctcttcataggtgTtcttcttttgggagacgcat							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	8	126030304	126030306	TTC	-	DEL	SQLE	ENST00000265896	human	ensembl	69_37n	1	known	in_frame_del	c.1208_1210	p.L406in_frame_del	1.000:0.994:1.000	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549	156	0	0	162	51	23.61	-	-	-	-	126030306	TTC	-	126030304	7	5	785	1	0	1	0	1	0	0	0	0	15219	1725	60	0	1137	0	SQLE	8	126030304	In_Frame_Del	DEL	TTC	TCGA-E2-A15P-01A-11D-A10Y-09	104065125	126030304	20333718	27	67600										
ENTPD2	0	genome.wustl.edu	37	chr9	139943179	139943179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	caagcgcagccaggagcgcgGaggcgaagagcagcaggagg	19	10	0	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	9	139943179	139943179	G	A	SNP	ENTPD2	ENST00000355097	human	ensembl	69_37n	-1	known	missense	c.1418	p.S473F	0.001	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD2	HGNC	ENSG00000054179	16	0	0	12	5	29.41	-	-	-	A	139943179	G	A	139943179	3	1	785	1	0	0	0	0	1	0	0	0	5176	1174	41	2	73	2	ENTPD2	9	139943179	Missense_Mutation	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09		139943179	1270252	28	67601										
TIMM23	0	genome.wustl.edu	37	chr10	51592555	51592555	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	atgtgctcccagttattataTagtgcatagaggctggtaag	11	6	0	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	10	51592555	51592555	T	C	SNP	TIMM23	ENST00000444743	human	ensembl	69_37n	-1	known	missense	c.271	p.I91V	0.268	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TIMM23	HGNC	ENSG00000138297	144	0	0	94	82	46.59	-	-	-	C	51592555	T	C	51592555	3	2	785	1	0	0	0	0	1	0	0	0	16006	1393	49	5	54	5	TIMM23	10	51592555	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09		51592555	83942192	29	67602										
DBX1	0	genome.wustl.edu	37	chr11	20177994	20177994	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gggcccttctggcccacgtcGctgaggtccgggtgcggatt	16	13	1	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	11	20177994	20177994	G	A	SNP	DBX1	ENST00000227256	human	ensembl	69_37n	-1	known	silent	c.915	p.S305	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DBX1	HGNC	ENSG00000109851	19	0	0	22	13	37.14	-	-	-	A	20177994	G	A	20177994	2	1	785	1	0	0	0	0	0	0	0	1	4291	1078	38	1		1	DBX1	11	20177994	Silent	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09		20177994	114828522	30	67603										
LPXN	0	genome.wustl.edu	37	chr11	58345493	58345493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	aggtgagtgactcacacaccGgaagacgagatcaataatgt	11	8	2	4			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	11	58345493	58345493	G	A	SNP	LPXN	ENST00000528954	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	0.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	28	0	0	26	16	38.1	-	-	-	A	58345493	G	A	58345493	2	1	785	1	0	0	0	0	0	0	0	1	8995	1130	39	1		1	LPXN	11	58345493	Silent	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09	38167499	58345493	76661023	31	67604										
SLC35E3	0	genome.wustl.edu	37	chr12	69140514	69140516	+	In_Frame_Del	DEL	CTT	CTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	gtgatcatagccatccagacCttctgctaccagaaaacctt							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	12	69140514	69140516	CTT	-	DEL	SLC35E3	ENST00000398004	human	ensembl	69_37n	1	known	in_frame_del	c.357_359	p.F120in_frame_del	0.697:0.552:0.908	NULL	pfam_DUF250,pfam_DMT	-	no_errors	SLC35E3	HGNC	ENSG00000175782	108	0	0	126	28	18.18	-	-	-	-	69140516	CTT	-	69140514	7	5	785	1	0	1	0	1	0	0	0	0	14675	668	24	0	359	0	SLC35E3	12	69140514	In_Frame_Del	DEL	CTT	TCGA-E2-A15P-01A-11D-A10Y-09		69140514	64711381	32	67605										
TTC7B	0	genome.wustl.edu	37	chr14	91007788	91007788	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ccaaggctgtcaggaagcacTccgtagccgccgcatcgttg	12	14	1	0			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	14	91007788	91007788	T	G	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.2507	p.E836A	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	33	0	0	20	8	28.57	-	-	-	G	91007788	T	G	91007788	3	3	785	1	0	0	0	0	1	0	0	0	16810	1551	54	5	79	5	TTC7B	14	91007788	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09		91007788	16341752	33	67606										
TTC7B	0	genome.wustl.edu	37	chr14	91007891	91007891	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	caccgcgtcccggaggatctTctccgccagactgtagcggc	12	16	2	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	14	91007891	91007891	T	G	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.2404	p.K802Q	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	33	0	0	29	13	30.95	-	-	-	G	91007891	T	G	91007891	3	3	785	1	0	0	0	0	1	0	0	0	16810	1792	62	5	182	5	TTC7B	14	91007891	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09	103	91007891	16341649	34	67607										
TMEM87A	0	genome.wustl.edu	37	chr15	42529656	42529656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ctcctttgtatcggatattcTgaaattccgcatagaagaca	7	9	1	3			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	15	42529656	42529656	T	C	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.842	p.Q281R	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	166	0	0	134	62	31.47	-	-	-	C	42529656	T	C	42529656	3	2	785	1	0	0	0	0	1	0	0	0	16305	1580	55	5	873	5	TMEM87A	15	42529656	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09		42529656	60001736	35	67608										
DNAJA4	0	genome.wustl.edu	37	chr15	78572663	78572666	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tttactccctcctcgacagaAagtgaggattacagatgaca							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	15	78572663	78572666	AAGT	-	DEL	DNAJA4	ENST00000394855	human	ensembl	69_37n	1	known	frame_shift_del	c.1142_1145	p.K381fs	0.974:0.121:0.117:0.114	NULL	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA4	HGNC	ENSG00000140403	73	0	0	54	22	27.16	-	-	-	-	78572666	AAGT	-	78572663	7	5	785	1	0	1	0	1	0	0	0	0	4649	14	1	0	1227	0	DNAJA4	15	78572663	Frame_Shift_Del	DEL	AAGT	TCGA-E2-A15P-01A-11D-A10Y-09	36043007	78572663	23958729	36	67609										
ROGDI	0	genome.wustl.edu	37	chr16	4852446	4852448	+	In_Frame_Del	DEL	CTC	CTC	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tcgtgcagcagccagcggaaCtcctcctcctgcgggacaga							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	16	4852446	4852448	CTC	-	DEL	ROGDI	ENST00000322048	human	ensembl	69_37n	-1	known	in_frame_del	c.54_52	p.E18in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	ROGDI	HGNC	ENSG00000067836	8	0	0	18	5	21.74	-	-	-	-	4852448	CTC	-	4852446	7	5	785	1	0	1	0	1	0	0	0	0	13606	564	20	0	849	0	ROGDI	16	4852446	In_Frame_Del	DEL	CTC	TCGA-E2-A15P-01A-11D-A10Y-09		4852446	85502307	37	67610										
SUZ12	0	genome.wustl.edu	37	chr17	30267462	30267465	+	Frame_Shift_Del	DEL	CTTA	CTTA	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	caatatttttgcacagaactCttacttacatgtctcatcga							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTTA	CTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	17	30267462	30267465	CTTA	-	DEL	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	frame_shift_del	c.343_346	p.Y117fs	1.000:1.000:1.000:1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	57	0	0	71	10	12.2	-	-	-	-	30267465	CTTA	-	30267462	7	5	785	1	0	1	0	1	0	0	0	0	15507	913	32	0	353	0	SUZ12	17	30267462	Frame_Shift_Del	DEL	CTTA	TCGA-E2-A15P-01A-11D-A10Y-09		30267462	50927748	38	67611										
AATK	0	genome.wustl.edu	37	chr17	79094046	79094048	+	In_Frame_Del	DEL	CTT	CTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tcgtcgaagaaggacacggcCttcttcttgcgttccaggtc							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	17	79094046	79094048	CTT	-	DEL	AATK	ENST00000326724	human	ensembl	69_37n	-1	known	in_frame_del	c.3690_3688	p.K1230in_frame_del	0.995:1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409	19	0	0	30	5	13.89	-	-	-	-	79094048	CTT	-	79094046	7	5	785	1	0	1	0	1	0	0	0	0	26	680	24	0	450	0	AATK	17	79094046	In_Frame_Del	DEL	CTT	TCGA-E2-A15P-01A-11D-A10Y-09	48826584	79094046	2101164	39	67612										
PHLDB3	0	genome.wustl.edu	37	chr19	44008096	44008098	+	In_Frame_Del	DEL	CTT	CTT	-													0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	agtgctgctgccttctcccaCttcttcttcctctgcctgct							TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	19	44008096	44008098	CTT	-	DEL	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	in_frame_del	c.175_173	p.E58in_frame_del	1.000:0.998:1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	102	0	0	102	42	29.17	-	-	-	-	44008098	CTT	-	44008096	7	5	785	1	0	1	0	1	0	0	0	0	11927	565	20	0	1807	0	PHLDB3	19	44008096	In_Frame_Del	DEL	CTT	TCGA-E2-A15P-01A-11D-A10Y-09		44008096	15120887	40	67613										
CRYZL1	0	genome.wustl.edu	37	chr21	34968081	34968081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ttgacaaattccaaacttcaTcattcaggaaagctaacgtt	5	9	3	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	21	34968081	34968081	T	C	SNP	CRYZL1	ENST00000381554	human	ensembl	69_37n	-1	known	missense	c.860	p.D287G	1.000	smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZL1	HGNC	ENSG00000205758	144	0	0	137	45	24.73	-	-	-	C	34968081	T	C	34968081	3	2	785	1	0	0	0	0	1	0	0	0	3953	1435	50	5	201	5	CRYZL1	21	34968081	Missense_Mutation	SNP	T	TCGA-E2-A15P-01A-11D-A10Y-09		34968081	13161814	41	67614										
RIPK4	0	genome.wustl.edu	37	chr21	43187137	43187137	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	ccaccttctcccagcccgtgAactcgcccgcgtcgaaggtg	10	18	1	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	21	43187137	43187137	A	T	SNP	RIPK4	ENST00000352483	human	ensembl	69_37n	-1	known	missense	c.65	p.F22Y	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421	18	0	0	16	6	27.27	-	-	-	T	43187137	A	T	43187137	3	4	785	1	0	0	0	0	1	0	0	0	13469	246	9	5	2321	5	RIPK4	21	43187137	Missense_Mutation	SNP	A	TCGA-E2-A15P-01A-11D-A10Y-09	8219056	43187137	4942758	42	67615										
PASD1	0	genome.wustl.edu	37	chrX	150832809	150832809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0232558139534884	1	0.987094234114834	0.722413793103448	NA	0.722413793103448	1	1	0	tggacctgggggctgctggcGcaagtgctcaggtactctga	16	10	2	1			TCGA-E2-A15P-01A-11D-A10Y-09	TCGA-E2-A15P-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5f1853c2-6579-42d0-adc2-636b5de543e4	07d07a8a-5565-4f85-9de7-dd082bc2802a	X	150832809	150832809	G	A	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	missense	c.1060	p.A354T	0.000	NULL	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	75	0	0	73	38	34.23	-	-	-	A	150832809	G	A	150832809	3	1	785	1	0	0	0	0	1	0	0	0	11544	1087	38	1	1098	1	PASD1	23	150832809	Missense_Mutation	SNP	G	TCGA-E2-A15P-01A-11D-A10Y-09		150832809	4437751	43	67616										
SCNN1D	0	genome.wustl.edu	37	chr1	1222976	1222976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	agcgccccggcatcacccacGgtgggtgccagcccctggcc	13	19	1	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	1222976	1222976	G	A	SNP	SCNN1D	ENST00000379116	human	ensembl	69_37n	1	known	missense	c.1399	p.G467R	0.053	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,superfamily_FH2_actin-bd,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572	54	0	0	68	36	34.62	-	-	-	A	1222976	G	A	1222976	3	1	786	1	0	0	0	0	1	0	0	0	14017	1130	39	1	1131	1	SCNN1D	1	1222976	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		1222976	248027645	1	67617										
RNF207	0	genome.wustl.edu	37	chr1	6271954	6271954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gggggcttaggccccaaggcGctgacggggccccactgccc	16	16	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	6271954	6271954	G	A	SNP	RNF207	ENST00000377948	human	ensembl	69_37n	1	known	missense	c.289	p.A97T	0.306	NULL	NULL	-	no_errors	RNF207	HGNC	ENSG00000158286	15	0	0	4	11	73.33	-	-	-	A	6271954	G	A	6271954	3	1	786	1	0	0	0	0	1	0	0	0	13560	1074	38	1	1183	1	RNF207	1	6271954	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	5048978	6271954	242978667	2	67618										
OPRD1	0	genome.wustl.edu	37	chr1	29189481	29189481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	tggtgctggtggttgtgggcGccttcgtggtgtgttgggcg	21	6	0	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	29189481	29189481	G	A	SNP	OPRD1	ENST00000234961	human	ensembl	69_37n	1	known	missense	c.805	p.A269T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_Somatstn_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329	86	0	0	17	69	76.67	-	-	-	A	29189481	G	A	29189481	3	1	786	1	0	0	0	0	1	0	0	0	10957	1087	38	1	815	1	OPRD1	1	29189481	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	22917527	29189481	220061140	3	67619										
ELF3	0	genome.wustl.edu	37	chr1	201980286	201980286	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	tggctgcaacctgtgagattAgcaacatttttagcaactac	8	9	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	201980286	201980286	A	G	SNP	ELF3	ENST00000359651	human	ensembl	69_37n	1	known	missense	c.22	p.S8G	0.998	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF3	HGNC	ENSG00000163435	186	1	0.53	111	150	57.25	-	-	-	G	201980286	A	G	201980286	3	3	786	1	0	0	0	0	1	0	0	0	5092	420	15	5	24	5	ELF3	1	201980286	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09	172790805	201980286	47270335	4	67620										
TRIM58	0	genome.wustl.edu	37	chr1	248039412	248039412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	aggagcagagtggggtttagGggtctgtcaagacacactgc	16	7	2	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	248039412	248039412	G	A	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	missense	c.1082	p.G361E	0.982	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	300	0	0	40	133	76.88	-	-	-	A	248039412	G	A	248039412	3	1	786	1	0	0	0	0	1	0	0	0	16627	1232	43	4	1104	4	TRIM58	1	248039412	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	46059126	248039412	1211209	5	67621										
ADD2	0	genome.wustl.edu	37	chr2	70923448	70923448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gtagacactgctgatcttgcAccgcatgagccgctcccctt	9	15	1	3			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	2	70923448	70923448	A	G	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.403	p.C135R	1.000	superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	210	0	0	179	107	37.41	-	-	-	G	70923448	A	G	70923448	3	3	786	1	0	0	0	0	1	0	0	0	305	159	6	5	2006	5	ADD2	2	70923448	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09		70923448	172275925	6	67622										
ARHGAP15	0	genome.wustl.edu	37	chr2	144193247	144193247	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	ttggattggttccacgctatCaaaaatgcaattgacagatt	8	7	1	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	2	144193247	144193247	C	G	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	missense	c.552	p.I184M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	253	0	0	139	100	41.84	-	-	-	G	144193247	C	G	144193247	3	3	786	1	0	0	0	0	1	0	0	0	868	816	29	2	574	2	ARHGAP15	2	144193247	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09	73269799	144193247	99006126	7	67623										
WNT7A	0	genome.wustl.edu	37	chr3	13860569	13860569	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gttgtagccacgcccacagcAcatgaggtcacagccgctgg	12	14	1	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	3	13860569	13860569	A	T	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	missense	c.922	p.C308S	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	101	0	0	65	33	33.67	-	-	-	T	13860569	A	T	13860569	3	4	786	1	0	0	0	0	1	0	0	0	17491	159	6	5	131	5	WNT7A	3	13860569	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09		13860569	184161861	8	67624										
CADPS	0	genome.wustl.edu	37	chr3	62467428	62467428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	atatagcagccatccatgacGgtgccgaaaaagtaggcatt	10	9	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	3	62467428	62467428	G	A	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3143	p.P1048L	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	348	0	0	174	126	41.86	-	-	-	A	62467428	G	A	62467428	3	1	786	1	0	0	0	0	1	0	0	0	2595	1116	39	1	954	1	CADPS	3	62467428	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	48606859	62467428	135555002	9	67625										
RGS12	0	genome.wustl.edu	37	chr4	3441258	3441258	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	cttgtaactggctcggcgccCgggcgggatggtggcatagc	17	11	0	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	4	3441258	3441258	C	G	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	silent	c.4191	p.P1397	0.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	42	0	0	35	30	46.15	-	-	-	G	3441258	C	G	3441258	2	3	786	1	0	0	0	0	0	0	0	1	13379	639	23	3		3	RGS12	4	3441258	Silent	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		3441258	187713018	10	67626										
OTUD4	0	genome.wustl.edu	37	chr4	146062555	146062555	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	aggtaggtcctccccagtctGacacagtgaataaggtggta	12	9	1	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	4	146062555	146062555	G	A	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	nonsense	c.2059	p.Q687*	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	236	0	0	149	102	40.64	-	-	-	A	146062555	G	A	146062555	4	1	786	1	0	0	0	0	0	1	0	0	11387	1299	45	2	1297	2	OTUD4	4	146062555	Nonsense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	142621297	146062555	45091721	11	67627										
POU5F2	0	genome.wustl.edu	37	chr5	93077199	93077199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	tgtcaacccgcaggggcatcGgccctctggggccgccccca	13	18	2	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	5	93077199	93077199	G	A	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.71	p.P24L	0.001	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	26	0	0	12	13	52	-	-	-	A	93077199	G	A	93077199	3	1	786	1	0	0	0	0	1	0	0	0	12356	1116	39	1	919	1	POU5F2	5	93077199	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		93077199	87838061	12	67628										
PHF15	0	genome.wustl.edu	37	chr5	133902109	133902109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	acctggctgaggcactggtcGacttcatctaccagtactgg	11	12	2	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	5	133902109	133902109	G	A	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	1	known	missense	c.1321	p.D441N	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	35	0	0	24	17	41.46	-	-	-	A	133902109	G	A	133902109	3	1	786	1	0	0	0	0	1	0	0	0	11900	1058	37	1	1303	1	PHF15	5	133902109	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	40824910	133902109	47013151	13	67629										
KIFC1	0	genome.wustl.edu	37	chr6	33374648	33374648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	caactctctacgctttgcctCcaaggtgcgattaccacccg	7	16	1	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	6	33374648	33374648	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	1	known	missense	c.1973	p.S658F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	209	0	0	117	104	47.06	-	-	-	T	33374648	C	T	33374648	3	4	786	1	0	0	0	0	1	0	0	0	8364	855	30	2	2011	2	KIFC1	6	33374648	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		33374648	137740419	14	67630										
NFE2L3	0	genome.wustl.edu	37	chr7	26225181	26225182	+	Frame_Shift_Ins	INS	-	-	AA													0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	caaagaaggaaactcttaagINSagagagcaagcacaatgtaa							TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	7	26225181	26225182	-	AA	INS	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	frame_shift_ins	c.1863_1864	p.R621fs	0.000:0.000	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	73	0	0	63	25	28.41	-	-	-	AA	26225182	-	AA	26225181	7	5	786	1	0	1	1	0	0	0	0	0	10441	933	33	0	1877	0	NFE2L3	7	26225181	Frame_Shift_Ins	INS	-	TCGA-E2-A15R-01A-11D-A10Y-09		26225181	132913482	15	67631										
NOM1	0	genome.wustl.edu	37	chr7	156742517	156742517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gaagcgcagaggcgggcgcgGgccgcgccgcggtcctgctg	20	14	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	7	156742517	156742517	G	A	SNP	NOM1	ENST00000275820	human	ensembl	69_37n	1	known	missense	c.86	p.G29E	0.007	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909	11	0	0	6	15	68.18	-	-	-	A	156742517	G	A	156742517	3	1	786	1	0	0	0	0	1	0	0	0	10602	1232	43	4	88	4	NOM1	7	156742517	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	130517336	156742517	2396146	16	67632										
ASAH1	0	genome.wustl.edu	37	chr8	17941525	17941525	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	cgcgacggcacagctgacggCggcagccaggaggactaagg	17	12	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	17941525	17941525	C	A	SNP	ASAH1	ENST00000262097	human	ensembl	69_37n	-1	known	missense	c.43	p.A15S	0.000	pirsf_Acid_ceramidase-like	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	-	no_errors	ASAH1	HGNC	ENSG00000104763	13	0	0	10	4	28.57	-	-	-	A	17941525	C	A	17941525	3	1	786	1	0	0	0	0	1	0	0	0	1010	768	27	3	1225	3	ASAH1	8	17941525	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		17941525	128422497	17	67633										
KCTD9	0	genome.wustl.edu	37	chr8	25292958	25292958	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gtgcaagattacagcggcttAaattggccattttgaagtta	10	6	0	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	25292958	25292958	A	G	SNP	KCTD9	ENST00000221200	human	ensembl	69_37n	-1	known	missense	c.734	p.L245S	1.000	pfam_5peptide_repeat	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Doublecortin_dom,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756	244	0	0	21	64	67.37	-	-	-	G	25292958	A	G	25292958	3	3	786	1	0	0	0	0	1	0	0	0	8170	372	13	5	451	5	KCTD9	8	25292958	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09	7351433	25292958	121071064	18	67634										
ASPH	0	genome.wustl.edu	37	chr8	62555969	62555969	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	atcatggtgcaatctttcatCttctactactggttcactgg	7	10	6	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	62555969	62555969	C	T	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.733	p.D245N	0.002	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	115	0	0	155	44	22	-	-	-	T	62555969	C	T	62555969	3	4	786	1	0	0	0	0	1	0	0	0	1057	913	32	2	1623	2	ASPH	8	62555969	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09	37263011	62555969	83808053	19	67635										
OR13D1	0	genome.wustl.edu	37	chr9	107457129	107457129	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	cccttggcttgggctccactGagtgtgtcctcctggctgtg	13	13	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	9	107457129	107457129	G	T	SNP	OR13D1	ENST00000318763	human	ensembl	69_37n	1	known	nonsense	c.427	p.E143*	0.286	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13D1	HGNC	ENSG00000179055	408	0	0	214	163	43.24	-	-	-	T	107457129	G	T	107457129	4	4	786	1	0	0	0	0	0	1	0	0	11013	1291	45	2	429	2	OR13D1	9	107457129	Nonsense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		107457129	33756302	20	67636										
PCGF5	0	genome.wustl.edu	37	chr10	93021117	93021117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	attcattcgatgttctacacGtgtaactgtgggaactatta	8	7	2	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	10	93021117	93021117	G	A	SNP	PCGF5	ENST00000336126	human	ensembl	69_37n	1	known	missense	c.509	p.R170H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF5	HGNC	ENSG00000180628	17	0	0	18	12	40	-	-	-	A	93021117	G	A	93021117	3	1	786	1	0	0	0	0	1	0	0	0	11650	1145	40	1	531	1	PCGF5	10	93021117	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		93021117	42513630	21	67637										
OR52I2	0	genome.wustl.edu	37	chr11	4609000	4609000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	tcatcccagccaccttaaatCccatcatctatggcatgagg	6	14	3	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	11	4609000	4609000	C	T	SNP	OR52I2	ENST00000312614	human	ensembl	69_37n	1	known	missense	c.958	p.P320S	0.999	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52I2	HGNC	ENSG00000226288	391	0	0	494	164	24.89	-	-	-	T	4609000	C	T	4609000	3	4	786	1	0	0	0	0	1	0	0	0	11194	855	30	2	960	2	OR52I2	11	4609000	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		4609000	130397516	22	67638										
ARHGEF12	0	genome.wustl.edu	37	chr11	120351050	120351050	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	cagtggagagcacttttttgAtgcccgtgaagcacatagtg	12	8	0	3			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	11	120351050	120351050	A	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.4091	p.D1364V	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	238	0	0	19	99	83.9	-	-	-	T	120351050	A	T	120351050	3	4	786	1	0	0	0	0	1	0	0	0	899	333	12	5	4298	5	ARHGEF12	11	120351050	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09	115742050	120351050	14655466	23	67639										
CSNK1A1L	0	genome.wustl.edu	37	chr13	37678978	37678978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	tacccatcaggaagttatctGgtttaatgtctcggtgtaga	10	7	3	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	13	37678978	37678978	G	T	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	missense	c.416	p.P139Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	600	0	0	89	197	68.64	-	-	-	T	37678978	G	T	37678978	3	4	786	1	0	0	0	0	1	0	0	0	3983	1348	47	4	601	4	CSNK1A1L	13	37678978	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		37678978	77490900	24	67640										
GCH1	0	genome.wustl.edu	37	chr14	55369216	55369216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	ctcctcgctgcggggccgctCgcccttccagccgtccgcgg	13	20	0	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	14	55369216	55369216	C	T	SNP	GCH1	ENST00000395514	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	0.738	NULL	pfam_GTP_CycHdrlase_I/CN_OxRdtase,tigrfam_GTP_CycHdrlase_I	-	no_errors	GCH1	HGNC	ENSG00000131979	25	0	0	13	17	56.67	-	-	-	T	55369216	C	T	55369216	3	4	786	1	0	0	0	0	1	0	0	0	6341	893	31	1	710	1	GCH1	14	55369216	Missense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		55369216	51980324	25	67641										
DIO2	0	genome.wustl.edu	37	chr14	80669412	80669412	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	agccactgaggagaactcttCcaccagtttgcggaaggctg	12	11	1	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	14	80669412	80669412	C	T	SNP	DIO2	ENST00000557125	human	ensembl	69_37n	-1	putative	nonsense	c.66	p.W22*	1.000	NULL	NULL	-	no_errors	DIO2	HGNC	ENSG00000211448	171	0	0	122	84	40.78	-	-	-	T	80669412	C	T	80669412	4	4	786	1	0	0	0	0	0	1	0	0	4561	864	30	2	383	2	DIO2	14	80669412	Nonsense_Mutation	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09	25300196	80669412	26680128	26	67642										
TBC1D3	0	genome.wustl.edu	37	chr17	36340138	36340138	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gattcttgttatcggcatcaAcgcctgttcgccttctacca	7	13	3	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	14	0	0	2	3	60	-	-	-	G	36340138	A	G	36340138	2	3	786	1	0	0	0	0	0	0	0	1	15712	40	2	5		5	TBC1D3	17	36340138	Silent	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09		36340138	44855072	27	67643										
SLC4A1	0	genome.wustl.edu	37	chr17	42330650	42330650	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	agggcatcccaaagagggcgGccaccccacccatgcctact	10	17	0	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	42330650	42330650	G	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.2147	p.A716D	0.014	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	75	0	0	47	67	58.26	-	-	-	T	42330650	G	T	42330650	3	4	786	1	0	0	0	0	1	0	0	0	14739	1203	42	4	604	4	SLC4A1	17	42330650	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	5990512	42330650	38864560	28	67644										
MTMR4	0	genome.wustl.edu	37	chr17	56569882	56569882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	aacatcttacctgcaatggtGtcttcgtttggccaaccaga	8	11	2	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	56569882	56569882	G	A	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.3400	p.H1134Y	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	323	0	0	190	144	42.99	-	-	-	A	56569882	G	A	56569882	3	1	786	1	0	0	0	0	1	0	0	0	10018	1377	48	4	195	4	MTMR4	17	56569882	Missense_Mutation	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	14239232	56569882	24625328	29	67645										
USP36	0	genome.wustl.edu	37	chr17	76798464	76798464	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gcgcagctgctggactcgggGacaacagcatcttggggctt	15	11	1	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	76798464	76798464	G	T	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	silent	c.2964	p.V988	0.115	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	103	0	0	73	48	39.67	-	-	-	T	76798464	G	T	76798464	2	4	786	1	0	0	0	0	0	0	0	1	17164	1161	41	2		2	USP36	17	76798464	Silent	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09	20228582	76798464	4396746	30	67646										
LRRC8E	0	genome.wustl.edu	37	chr19	7964376	7964376	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	atctcctttgtgtgcatctaCggacttacctgcatctacac	6	13	3	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	7964376	7964376	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	1	known	silent	c.969	p.Y323	0.126	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	168	0	0	107	76	41.53	-	-	-	T	7964376	C	T	7964376	2	4	786	1	0	0	0	0	0	0	0	1	9091	547	19	1		1	LRRC8E	19	7964376	Silent	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		7964376	51164607	31	67647										
ZNF699	0	genome.wustl.edu	37	chr19	9407034	9407034	+	Frame_Shift_Del	DEL	T	T	-													0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	ttcttatatgtattataaggTgagaggaagagctaaaggcc							TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	9407034	9407034	T	-	DEL	ZNF699	ENST00000308650	human	ensembl	69_37n	-1	known	frame_shift_del	c.1046	p.H349fs	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110	140	0	0	53	31	35.23	-	-	-	-	9407034	T	-	9407034	7	5	786	1	0	1	0	1	0	0	0	0	18197	1696	59	0	886	0	ZNF699	19	9407034	Frame_Shift_Del	DEL	T	TCGA-E2-A15R-01A-11D-A10Y-09	1442658	9407034	49721949	32	67648										
DEDD2	0	genome.wustl.edu	37	chr19	42703632	42703632	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	cgccccccttcctcctccatCagcaacaggcggcgccggcc	9	22	1	0			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	42703632	42703632	C	T	SNP	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	silent	c.939	p.L313	0.996	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	29	0	0	24	12	33.33	-	-	-	T	42703632	C	T	42703632	2	4	786	1	0	0	0	0	0	0	0	1	4416	813	29	2		2	DEDD2	19	42703632	Silent	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09	33296598	42703632	16425351	33	67649										
WDR4	0	genome.wustl.edu	37	chr21	44279796	44279796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gaggaggacagaagcagcccGggctgagttggcaccacgga	17	10	0	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	21	44279796	44279796	G	A	SNP	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	silent	c.603	p.P201	0.036	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	73	0	0	57	31	35.23	-	-	-	A	44279796	G	A	44279796	2	1	786	1	0	0	0	0	0	0	0	1	17390	1103	39	1		1	WDR4	21	44279796	Silent	SNP	G	TCGA-E2-A15R-01A-11D-A10Y-09		44279796	3850099	34	67650										
ARSF	0	genome.wustl.edu	37	chrX	3030432	3030432	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	gtgattaaaaaggtggccaaCgccctgaaggaacaccagga	12	9	0	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	3030432	3030432	C	T	SNP	ARSF	ENST00000359361	human	ensembl	69_37n	1	known	silent	c.1608	p.N536	0.001	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096	196	0	0	102	68	40	-	-	-	T	3030432	C	T	3030432	2	4	786	1	0	0	0	0	0	0	0	1	995	535	19	1		1	ARSF	23	3030432	Silent	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09		3030432	152240128	35	67651										
CXCR3	0	genome.wustl.edu	37	chrX	70836846	70836846	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	ccgggggcccccggcggtagAgctgggtggcatgaactatg	18	11	0	2			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	70836846	70836846	A	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.617	p.L206H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	38	0	0	32	21	39.62	-	-	-	T	70836846	A	T	70836846	3	4	786	1	0	0	0	0	1	0	0	0	4123	304	11	5	634	5	CXCR3	23	70836846	Missense_Mutation	SNP	A	TCGA-E2-A15R-01A-11D-A10Y-09	67806414	70836846	84433714	36	67652										
ZIC3	0	genome.wustl.edu	37	chrX	136649808	136649808	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108108108108108	4	0.356030377341679	2.0747198007472	5.70547945205479	1.71164383561644	0.523809523809524	1	0	acaaactggtcaaccacatcCgagtgcacacgggcgagaag	11	12	1	1			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	136649808	136649808	C	A	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	1	known	silent	c.958	p.R320	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	54	0	0	29	21	42	-	-	-	A	136649808	C	A	136649808	2	1	786	1	0	0	0	0	0	0	0	1	17776	644	23	3		3	ZIC3	23	136649808	Silent	SNP	C	TCGA-E2-A15R-01A-11D-A10Y-09	65812962	136649808	18620752	37	67653										
PTGER3	0	genome.wustl.edu	37	chr1	71318542	71318542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ttaatttccccaaaattcctCctggaaaacaaacaaatcaa	2	11	1	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	71318542	71318542	C	G	SNP	PTGER3	ENST00000460330	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369Q	0.987	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	198	0	0	72	58	44.62	-	-	-	G	71318542	C	G	71318542	3	3	787	1	0	0	0	0	1	0	0	0	12825	869	30	2	23	2	PTGER3	1	71318542	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09		71318542	177932079	1	67654										
THEM5	0	genome.wustl.edu	37	chr1	151823599	151823599	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cttctgggttggctggaaaaAgatgacatactcaaagcctt	10	8	2	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	151823599	151823599	A	G	SNP	THEM5	ENST00000368817	human	ensembl	69_37n	-1	known	missense	c.394	p.F132L	1.000	NULL	pfam_Thioestr_supf	-	no_errors	THEM5	HGNC	ENSG00000196407	257	1	0.39	145	89	37.87	-	-	-	G	151823599	A	G	151823599	3	3	787	1	0	0	0	0	1	0	0	0	15954	72	3	5	365	5	THEM5	1	151823599	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09	80505057	151823599	97427022	2	67655										
UCK2	0	genome.wustl.edu	37	chr1	165859581	165859581	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gccaaagccctgaagggccaGttcaactttgaccacccggg	11	14	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	165859581	165859581	G	A	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	1	known	silent	c.240	p.Q80	1.000	pfam_PRK/URK,pfam_Depp_CoAkinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	251	0	0	149	27	15.34	-	-	-	A	165859581	G	A	165859581	2	1	787	1	0	0	0	0	0	0	0	1	17021	1020	36	4		4	UCK2	1	165859581	Silent	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	14035982	165859581	83391040	3	67656										
HMCN1	0	genome.wustl.edu	37	chr1	185984569	185984569	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cattccatgtggatgtctatGgtgaggaacaacatatgctt	10	7	1	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	185984569	185984569	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.4909	p.V1637L	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	234	0	0	58	32	35.56	-	-	-	C	185984569	G	C	185984569	3	2	787	1	0	0	0	0	1	0	0	0	7271	1362	47	4	5031	4	HMCN1	1	185984569	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	20124988	185984569	63266052	4	67657										
TRAF5	0	genome.wustl.edu	37	chr1	211545718	211545718	+	Frame_Shift_Del	DEL	G	G	-													0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gtgctagagcatacctgaatGgggatgggtcagggaggggg							TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	211545718	211545718	G	-	DEL	TRAF5	ENST00000261464	human	ensembl	69_37n	1	known	frame_shift_del	c.1348	p.D451fs	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512	93	0	0	56	15	21.13	-	-	-	-	211545718	G	-	211545718	7	5	787	1	0	1	0	1	0	0	0	0	16540	1348	47	0	1386	0	TRAF5	1	211545718	Frame_Shift_Del	DEL	G	TCGA-E2-A15S-01A-11D-A10Y-09	25561149	211545718	37704903	5	67658										
SCN2A	0	genome.wustl.edu	37	chr2	166179821	166179822	+	Frame_Shift_Del	DEL	CT	CT	-													0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gacaatgacagccgaagagaCtctctgttcgtgccgcacag							TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	2	166179821	166179822	CT	-	DEL	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	frame_shift_del	c.1827_1828	p.L611fs	1.000:1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	169	0	0	47	20	29.85	-	-	-	-	166179822	CT	-	166179821	7	5	787	1	0	1	0	1	0	0	0	0	14004	564	20	0	1965	0	SCN2A	2	166179821	Frame_Shift_Del	DEL	CT	TCGA-E2-A15S-01A-11D-A10Y-09		166179821	77019552	6	67659										
ABCB11	0	genome.wustl.edu	37	chr2	169814622	169814622	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	caggttcaacttcttcctgcAcaggaatgtccttgtccttg	8	12	2	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	2	169814622	169814622	A	C	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.2195	p.V732G	0.663	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	80	0	0	29	17	36.96	-	-	-	C	169814622	A	C	169814622	3	2	787	1	0	0	0	0	1	0	0	0	42	159	6	5	1810	5	ABCB11	2	169814622	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09	3634801	169814622	73384751	7	67660										
CTNNB1	0	genome.wustl.edu	37	chr3	41268806	41268806	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	agagtgctgaaggtgctatcTgtctgctctagtaataagcc	11	8	3	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	41268806	41268806	T	A	SNP	CTNNB1	ENST00000349496	human	ensembl	69_37n	1	known	silent	c.1044	p.S348	0.987	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	CTNNB1	HGNC	ENSG00000168036	220	0	0	82	69	45.7	-	-	-	A	41268806	T	A	41268806	2	1	787	1	0	0	0	0	0	0	0	1	4048	1567	55	5		5	CTNNB1	3	41268806	Silent	SNP	T	TCGA-E2-A15S-01A-11D-A10Y-09		41268806	156753624	8	67661										
LTF	0	genome.wustl.edu	37	chr3	46501161	46501161	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ctcaccgcaatggcctggatAcactggatgggggagtctct	13	11	2	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	46501161	46501161	A	G	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	silent	c.192	p.C64	0.531	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	274	0	0	115	85	42.5	-	-	-	G	46501161	A	G	46501161	2	3	787	1	0	0	0	0	0	0	0	1	9145	389	14	5		5	LTF	3	46501161	Silent	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09	5232355	46501161	151521269	9	67662										
DALRD3	0	genome.wustl.edu	37	chr3	49053757	49053757	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tcgtggagatactgctgtcaGccagagccaggaagagctgg	15	9	1	3			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	49053757	49053757	G	C	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.1163	p.A388G	0.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	132	0	0	72	14	16.28	-	-	-	C	49053757	G	C	49053757	3	2	787	1	0	0	0	0	1	0	0	0	4261	971	34	4	484	4	DALRD3	3	49053757	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	2552596	49053757	148968673	10	67663										
CCDC50	0	genome.wustl.edu	37	chr3	191093245	191093245	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ctttcacccaagtcctcacaAaaagcagggcttcactgcaa	6	14	3	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	191093245	191093245	A	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	missense	c.843	p.Q281H	0.742	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	202	0	0	102	16	13.56	-	-	-	T	191093245	A	T	191093245	3	4	787	1	0	0	0	0	1	0	0	0	2847	11	1	5	865	5	CCDC50	3	191093245	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09	142039488	191093245	6929185	11	67664										
CD38	0	genome.wustl.edu	37	chr4	15818139	15818139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tgtgttttatctcagacatgTagactgccaaagtgtatggg	11	6	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	4	15818139	15818139	T	C	SNP	CD38	ENST00000226279	human	ensembl	69_37n	1	known	missense	c.239	p.V80A	0.000	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468	178	0	0	49	42	46.15	-	-	-	C	15818139	T	C	15818139	3	2	787	1	0	0	0	0	1	0	0	0	3038	1638	57	5	245	5	CD38	4	15818139	Missense_Mutation	SNP	T	TCGA-E2-A15S-01A-11D-A10Y-09		15818139	175336137	12	67665										
BMP3	0	genome.wustl.edu	37	chr4	81967479	81967479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tgcctctgcagaacaacgagCttcctggggcagaataccag	11	12	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	4	81967479	81967479	C	T	SNP	BMP3	ENST00000282701	human	ensembl	69_37n	1	known	missense	c.904	p.L302F	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785	131	0	0	19	30	61.22	-	-	-	T	81967479	C	T	81967479	3	4	787	1	0	0	0	0	1	0	0	0	1466	797	28	4	910	4	BMP3	4	81967479	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	66149340	81967479	109186797	13	67666										
GPR98	0	genome.wustl.edu	37	chr5	89939720	89939720	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	aacgattctgaaaaatgatgAtcctcatggcattatagaat	7	6	2	4			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	89939720	89939720	A	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.2654	p.D885V	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	324	0	0	98	103	51.24	-	-	-	T	89939720	A	T	89939720	3	4	787	1	0	0	0	0	1	0	0	0	6772	333	12	5	2708	5	GPR98	5	89939720	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09		89939720	90975540	14	67667										
FAT2	0	genome.wustl.edu	37	chr5	150905430	150905430	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gaaggcagagccgttgttccCcttggtgattcgaaacgagt	13	9	0	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	150905430	150905430	C	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.10405	p.G3469W	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	108	0	0	81	37	31.36	-	-	-	A	150905430	C	A	150905430	3	1	787	1	0	0	0	0	1	0	0	0	5736	623	22	4	2672	4	FAT2	5	150905430	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	60965710	150905430	30009830	15	67668										
FAT2	0	genome.wustl.edu	37	chr5	150924172	150924172	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ctgactttgtaataaggactCtgaaacagtgggttggattt	11	5	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	150924172	150924172	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.6516	p.Q2172	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	84	0	0	22	26	54.17	-	-	-	T	150924172	C	T	150924172	2	4	787	1	0	0	0	0	0	0	0	1	5736	912	32	2		2	FAT2	5	150924172	Silent	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	18742	150924172	29991088	16	67669										
BMP6	0	genome.wustl.edu	37	chr6	7845540	7845540	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cttttcttatcagcatttatCaagtcttacaggagcatcag	6	9	5	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	7845540	7845540	C	G	SNP	BMP6	ENST00000283147	human	ensembl	69_37n	1	known	missense	c.832	p.Q278E	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162	171	0	0	76	84	52.5	-	-	-	G	7845540	C	G	7845540	3	3	787	1	0	0	0	0	1	0	0	0	1469	827	29	2	838	2	BMP6	6	7845540	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09		7845540	163269527	17	67670										
MBOAT1	0	genome.wustl.edu	37	chr6	20144468	20144468	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tacccagaaaaatccgtagtGagaattccatagtggaagat	9	7	0	3			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	20144468	20144468	G	A	SNP	MBOAT1	ENST00000541730	human	ensembl	69_37n	-1	known	missense	c.11	p.S4L	0.999	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	276	0	0	242	32	11.68	-	-	-	A	20144468	G	A	20144468	3	1	787	1	0	0	0	0	1	0	0	0	9427	1277	45	2	1125	2	MBOAT1	6	20144468	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	12298928	20144468	150970599	18	67671										
PGK2	0	genome.wustl.edu	37	chr6	49753845	49753845	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	atttcatccatgagggctttGgttcccttagcaaaggcatc	9	10	1	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	49753845	49753845	G	T	SNP	PGK2	ENST00000304801	human	ensembl	69_37n	-1	known	silent	c.1056	p.T352	0.998	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950	325	0	0	149	35	19.02	-	-	-	T	49753845	G	T	49753845	2	4	787	1	0	0	0	0	0	0	0	1	11865	1335	47	4		4	PGK2	6	49753845	Silent	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	29609377	49753845	121361222	19	67672										
CASP2	0	genome.wustl.edu	37	chr7	142991361	142991361	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tagacaataaagatggtcctGtctgccttcaggtgaagcct	10	9	2	3			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	7	142991361	142991361	G	T	SNP	CASP2	ENST00000310447	human	ensembl	69_37n	1	known	missense	c.514	p.V172F	0.962	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144	347	0	0	122	96	44.04	-	-	-	T	142991361	G	T	142991361	3	4	787	1	0	0	0	0	1	0	0	0	2696	1377	48	4	532	4	CASP2	7	142991361	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		142991361	16147302	20	67673										
GHITM	0	genome.wustl.edu	37	chr10	85901316	85901316	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tctagggttttccacccagcTttcaccaaggcctcccctgt	7	16	2	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	10	85901316	85901316	T	G	SNP	GHITM	ENST00000372134	human	ensembl	69_37n	1	known	silent	c.60	p.A20	0.000	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678	232	0	0	147	29	16.48	-	-	-	G	85901316	T	G	85901316	2	3	787	1	0	0	0	0	0	0	0	1	6422	1596	56	5		5	GHITM	10	85901316	Silent	SNP	T	TCGA-E2-A15S-01A-11D-A10Y-09		85901316	49633431	21	67674										
BTBD10	0	genome.wustl.edu	37	chr11	13410404	13410404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cattggattctgtgcatcagGatcgaggtcactgttgccag	12	9	3	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	13410404	13410404	G	A	SNP	BTBD10	ENST00000278174	human	ensembl	69_37n	-1	known	missense	c.1402	p.P468S	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	113	0	0	38	12	24	-	-	-	A	13410404	G	A	13410404	3	1	787	1	0	0	0	0	1	0	0	0	1546	1174	41	2	29	2	BTBD10	11	13410404	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		13410404	121596112	22	67675										
F2	0	genome.wustl.edu	37	chr11	46744957	46744957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	actccactacccatcctgggGccgacctacaggagaatttc	8	15	0	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	46744957	46744957	G	T	SNP	F2	ENST00000311907	human	ensembl	69_37n	1	known	missense	c.448	p.A150S	0.171	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pirsf_Peptidase_S1A_prothrombin,pfscan_Kringle	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	87	0	0	44	30	40.54	-	-	-	T	46744957	G	T	46744957	3	4	787	1	0	0	0	0	1	0	0	0	5379	1203	42	4	470	4	F2	11	46744957	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	33334553	46744957	88261559	23	67676										
TPCN2	0	genome.wustl.edu	37	chr11	68825062	68825062	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gcagggttacctgttcgggtGggcccatttccagaaaaacc	12	11	0	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	68825062	68825062	G	C	SNP	TPCN2	ENST00000294309	human	ensembl	69_37n	1	known	missense	c.446	p.W149S	0.992	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	384	0	0	195	117	37.38	-	-	-	C	68825062	G	C	68825062	3	2	787	1	0	0	0	0	1	0	0	0	16492	1357	47	4	464	4	TPCN2	11	68825062	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	22080105	68825062	66181454	24	67677										
KRTAP5-10	0	genome.wustl.edu	37	chr11	71276905	71276905	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tggttcctgtgggggctccaAggggggctgtggctcctgtg	19	9	0	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	71276905	71276905	A	C	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	1	known	missense	c.272	p.K91T	0.636	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	107	0	0	63	33	34.38	-	-	-	C	71276905	A	C	71276905	3	2	787	1	0	0	0	0	1	0	0	0	8613	72	3	5	274	5	KRTAP5-10	11	71276905	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09	2451843	71276905	63729611	25	67678										
C12orf39	0	genome.wustl.edu	37	chr12	21679844	21679844	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tcagaagtctggcagcaacaAccttggctcttttcctggtg	10	11	3	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	21679844	21679844	A	G	SNP	C12orf39	ENST00000256969	human	ensembl	69_37n	1	known	missense	c.31	p.T11A	0.000	NULL	NULL	-	no_errors	C12orf39	HGNC	ENSG00000134548	382	1	0.26	143	130	47.62	-	-	-	G	21679844	A	G	21679844	3	3	787	1	0	0	0	0	1	0	0	0	1696	43	2	5	37	5	C12orf39	12	21679844	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09		21679844	112172051	26	67679										
LMBR1L	0	genome.wustl.edu	37	chr12	49499717	49499717	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ggacacttacgcaatcttgtTgacggtggcatcttcatcat	9	10	4	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	49499717	49499717	T	C	SNP	LMBR1L	ENST00000267102	human	ensembl	69_37n	-1	known	missense	c.181	p.N61D	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1L	HGNC	ENSG00000139636	264	0	0	236	46	16.31	-	-	-	C	49499717	T	C	49499717	3	2	787	1	0	0	0	0	1	0	0	0	8897	1812	63	5	1348	5	LMBR1L	12	49499717	Missense_Mutation	SNP	T	TCGA-E2-A15S-01A-11D-A10Y-09	27819873	49499717	84352178	27	67680										
PIP4K2C	0	genome.wustl.edu	37	chr12	57987825	57987825	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cagatcaatgagctcagccaGgtgcctcccccggtgatgct	11	14	2	3			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	57987825	57987825	G	T	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	missense	c.192	p.Q64H	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	242	0	0	107	132	55.23	-	-	-	T	57987825	G	T	57987825	3	4	787	1	0	0	0	0	1	0	0	0	12012	991	35	4	198	4	PIP4K2C	12	57987825	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	8488108	57987825	75864070	28	67681										
NFYB	0	genome.wustl.edu	37	chr12	104519903	104519903	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ctacgttacctttcccgtttGaggtatggcatttttcatta	7	9	1	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	104519903	104519903	G	A	SNP	NFYB	ENST00000240055	human	ensembl	69_37n	-1	known	nonsense	c.220	p.Q74*	1.000	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	NFYB	HGNC	ENSG00000120837	714	0	0	360	68	15.85	-	-	-	A	104519903	G	A	104519903	4	1	787	1	0	0	0	0	0	1	0	0	10462	1299	45	2	423	2	NFYB	12	104519903	Nonsense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	46532078	104519903	29331992	29	67682										
USPL1	0	genome.wustl.edu	37	chr13	31232168	31232168	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ttcaagaccaatttgtggacAtaagttttccatcccaagtt	6	9	1	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	13	31232168	31232168	A	G	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.1954	p.I652V	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	166	0	0	11	38	77.55	-	-	-	G	31232168	A	G	31232168	3	3	787	1	0	0	0	0	1	0	0	0	17189	217	8	5	1984	5	USPL1	13	31232168	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09		31232168	83937710	30	67683										
ZWILCH	0	genome.wustl.edu	37	chr15	66829513	66829513	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tttgttttttcaggatctgcAtaaagtattacaaacaaaat	5	5	2	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	15	66829513	66829513	A	C	SNP	ZWILCH	ENST00000307897	human	ensembl	69_37n	1	known	missense	c.1486	p.I496L	1.000	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442	286	1	0.35	146	25	14.62	-	-	-	C	66829513	A	C	66829513	3	2	787	1	0	0	0	0	1	0	0	0	18339	217	8	5	1548	5	ZWILCH	15	66829513	Missense_Mutation	SNP	A	TCGA-E2-A15S-01A-11D-A10Y-09		66829513	35701879	31	67684										
FHOD1	0	genome.wustl.edu	37	chr16	67265611	67265611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	agcgaggccgccaatggaggCaagagtcatcaggaagttct	14	9	3	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	16	67265611	67265611	C	A	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	missense	c.2314	p.A772S	0.971	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	266	0	0	58	37	38.95	-	-	-	A	67265611	C	A	67265611	3	1	787	1	0	0	0	0	1	0	0	0	5928	710	25	4	1212	4	FHOD1	16	67265611	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09		67265611	23089142	32	67685										
CTRB2	0	genome.wustl.edu	37	chr16	75239875	75239875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gagggagcccccgcagaagtGgaagccggttttgtcctgtg	16	10	0	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	16	75239875	75239875	G	T	SNP	CTRB2	ENST00000303037	human	ensembl	69_37n	-1	known	missense	c.172	p.H58N	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTRB2	HGNC	ENSG00000168928	11	0	0	2	2	50	-	-	-	T	75239875	G	T	75239875	3	4	787	1	0	0	0	0	1	0	0	0	4058	1348	47	4	639	4	CTRB2	16	75239875	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	7974264	75239875	15114878	33	67686										
CHAD	0	genome.wustl.edu	37	chr17	48545782	48545782	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	agctcagtgaccttgttgtgGtccaggtagaggtaggtcag	15	7	2	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	17	48545782	48545782	G	A	SNP	CHAD	ENST00000258969	human	ensembl	69_37n	-1	known	silent	c.393	p.D131	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457	94	0	0	40	36	46.75	-	-	-	A	48545782	G	A	48545782	2	1	787	1	0	0	0	0	0	0	0	1	3339	1252	44	4		4	CHAD	17	48545782	Silent	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		48545782	32649428	34	67687										
CYP2F1	0	genome.wustl.edu	37	chr19	41627952	41627952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	agtgcctgagagacctcatcGcccacagcgtccacgaccac	9	17	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	41627952	41627952	G	T	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	1	known	missense	c.736	p.A246S	0.224	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	149	0	0	53	64	54.7	-	-	-	T	41627952	G	T	41627952	3	4	787	1	0	0	0	0	1	0	0	0	4202	1087	38	3	754	3	CYP2F1	19	41627952	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		41627952	17501031	35	67688										
TMEM91	0	genome.wustl.edu	37	chr19	41889743	41889743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	atgcggctgccctggtgaccCtggctgcctaccttgcctcc	11	17	0	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	41889743	41889743	C	T	SNP	TMEM91	ENST00000392002	human	ensembl	69_37n	1	known	silent	c.484	p.L162	1.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	TMEM91	HGNC	ENSG00000142046	71	0	0	63	13	17.11	-	-	-	T	41889743	C	T	41889743	2	4	787	1	0	0	0	0	0	0	0	1	16315	680	24	4		4	TMEM91	19	41889743	Silent	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	261791	41889743	17239240	36	67689										
POU2F2	0	genome.wustl.edu	37	chr19	42596350	42596350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	aattgagggggggcgcagccCcgcccccgcccccaccccct	12	21	0	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	42596350	42596350	C	T	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.1271	p.G424E	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	8	0	0	25	15	37.5	-	-	-	T	42596350	C	T	42596350	3	4	787	1	0	0	0	0	1	0	0	0	12345	623	22	4	176	4	POU2F2	19	42596350	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	706607	42596350	16532633	37	67690										
NLRP12	0	genome.wustl.edu	37	chr19	54312951	54312951	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tgggcgctcctgcagcgcttCagacagaacgaggagaccat	13	12	1	3			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	54312951	54312951	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	silent	c.1962	p.L654	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	97	0	0	35	9	20.45	-	-	-	T	54312951	C	T	54312951	2	4	787	1	0	0	0	0	0	0	0	1	10546	813	29	2		2	NLRP12	19	54312951	Silent	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09	11716601	54312951	4816032	38	67691										
ANGPT4	0	genome.wustl.edu	37	chr20	896760	896760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	gctggactacaagtgtctcgCagcccctatccgcctcctgc	9	17	1	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	20	896760	896760	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.98	p.C33Y	0.004	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	171	0	0	62	14	18.42	-	-	-	T	896760	C	T	896760	3	4	787	1	0	0	0	0	1	0	0	0	612	710	25	4	1449	4	ANGPT4	20	896760	Missense_Mutation	SNP	C	TCGA-E2-A15S-01A-11D-A10Y-09		896760	62128760	39	67692										
SMC1B	0	genome.wustl.edu	37	chr22	45804622	45804622	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	cttgcaaatgttttctcttcGccactttcctccacatatat	3	13	1	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	22	45804622	45804622	G	A	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	silent	c.267	p.G89	0.803	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	180	0	0	46	28	37.84	-	-	-	A	45804622	G	A	45804622	2	1	787	1	0	0	0	0	0	0	0	1	14871	1074	38	1		1	SMC1B	22	45804622	Silent	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		45804622	5499944	40	67693										
BCOR	0	genome.wustl.edu	37	chrX	39937122	39937122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ttcgctcgccccacacatgcGgaccctctcgctgttcatcc	7	19	2	0			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	39937122	39937122	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.61	p.R21C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	153	0	0	90	31	25.62	-	-	-	A	39937122	G	A	39937122	3	1	787	1	0	0	0	0	1	0	0	0	1390	1116	39	1	5262	1	BCOR	23	39937122	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09		39937122	115333438	41	67694										
SHROOM4	0	genome.wustl.edu	37	chrX	50350476	50350476	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	tgctcaggttgagatcccaaGtgaccccttattggaggcaa	11	10	1	2			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	50350476	50350476	G	C	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.3666	p.H1222Q	0.000	pfam_ASD2	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	202	0	0	74	47	38.84	-	-	-	C	50350476	G	C	50350476	3	2	787	1	0	0	0	0	1	0	0	0	14385	1020	36	4	831	4	SHROOM4	23	50350476	Missense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	10413354	50350476	104920084	42	67695										
IGSF1	0	genome.wustl.edu	37	chrX	130409100	130409100	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.116279069767442	5	0.293639582065013	2.00279459711225	1.26843657817109	2.34172906739278	0.206349206349206	0.776190476190475	0	ggcatccagaagtcagccctGtacccacttggcctctgttg	10	14	2	1			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	130409100	130409100	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	nonsense	c.3360	p.Y1120*	0.997	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	215	0	0	72	101	58.38	-	-	-	T	130409100	G	T	130409100	4	4	787	1	0	0	0	0	0	1	0	0	7650	1372	48	4	681	4	IGSF1	23	130409100	Nonsense_Mutation	SNP	G	TCGA-E2-A15S-01A-11D-A10Y-09	80058624	130409100	24861460	43	67696										
UBR4	0	genome.wustl.edu	37	chr1	19491831	19491831	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gctgttgccatcatgatctgTacaagttctccactgggagg	11	10	3	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	19491831	19491831	T	C	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.4224	p.V1408	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	80	0	0	23	4	14.81	-	-	-	C	19491831	T	C	19491831	2	2	788	1	0	0	0	0	0	0	0	1	17001	1625	57	5		5	UBR4	1	19491831	Silent	SNP	T	TCGA-E2-A15T-01A-11D-A10Y-09		19491831	229758790	1	67697										
EIF2C1	0	genome.wustl.edu	37	chr1	36359982	36359982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ccgcgtgtgtaatgttacccGtcgccctgctagccatcaga	10	14	1	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	36359982	36359982	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	1	known	missense	c.851	p.R284H	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	207	0	0	31	31	50	-	-	-	A	36359982	G	A	36359982	3	1	788	1	0	0	0	0	1	0	0	0	5040	1145	40	1	877	1	EIF2C1	1	36359982	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	16868151	36359982	212890639	2	67698										
PALMD	0	genome.wustl.edu	37	chr1	100154698	100154698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	aagattaaaactaatggactGggtattggtgtaaatgaatc	10	3	0	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	100154698	100154698	G	A	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	1	known	silent	c.882	p.L294	0.002	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	185	0	0	61	31	33.7	-	-	-	A	100154698	G	A	100154698	2	1	788	1	0	0	0	0	0	0	0	1	11484	1335	47	4		4	PALMD	1	100154698	Silent	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	63794716	100154698	149095923	3	67699										
FMN2	0	genome.wustl.edu	37	chr1	240374531	240374531	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tatctcaaagacgaaggctaAacaagtgagtatttttgtgc	9	6	1	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	240374531	240374531	A	G	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4061	p.K1354R	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	316	0	0	72	73	50.34	-	-	-	G	240374531	A	G	240374531	3	3	788	1	0	0	0	0	1	0	0	0	5996	14	1	5	4083	5	FMN2	1	240374531	Missense_Mutation	SNP	A	TCGA-E2-A15T-01A-11D-A10Y-09	140219833	240374531	8876090	4	67700										
KCNS3	0	genome.wustl.edu	37	chr2	18112662	18112662	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gaacgcaaggaggaaaaccaCgagaaggactgggaccagaa	14	8	0	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	18112662	18112662	C	T	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	1	known	silent	c.387	p.H129	0.038	superfamily_BTB/POZ_fold	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	151	0	0	27	14	34.15	-	-	-	T	18112662	C	T	18112662	2	4	788	1	0	0	0	0	0	0	0	1	8144	535	19	1		1	KCNS3	2	18112662	Silent	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		18112662	225086711	5	67701										
RGPD8	0	genome.wustl.edu	37	chr2	113161599	113161599	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	cttgtacatcaatttttccaAtatcatcgctaccaagaaaa	3	10	2	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	113161599	113161599	A	T	SNP	RGPD8	ENST00000302558	human	ensembl	69_37n	-1	known	missense	c.1220	p.I407N	0.992	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD8	HGNC	ENSG00000169629	74	0	0	22	11	33.33	-	-	-	T	113161599	A	T	113161599	3	4	788	1	0	0	0	0	1	0	0	0	13374	101	4	5	4137	5	RGPD8	2	113161599	Missense_Mutation	SNP	A	TCGA-E2-A15T-01A-11D-A10Y-09	95048937	113161599	130037774	6	67702										
UGT1A6	0	genome.wustl.edu	37	chr2	234601744	234601744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	taggtgacaagctgctggtgGtccctcaggacggaagccac	14	11	1	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	234601744	234601744	G	T	SNP	UGT1A6	ENST00000305139	human	ensembl	69_37n	1	known	missense	c.94	p.V32F	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165	88	0	0	12	14	53.85	-	-	-	T	234601744	G	T	234601744	3	4	788	1	0	0	0	0	1	0	0	0	17046	1261	44	4	96	4	UGT1A6	2	234601744	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	121440145	234601744	8597629	7	67703										
PDCD1	0	genome.wustl.edu	37	chr2	242793270	242793270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ggctgggcactccgagggccGtcagctgagcccctgcgggc	17	15	1	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	242793270	242793270	G	A	SNP	PDCD1	ENST00000334409	human	ensembl	69_37n	-1	known	silent	c.807	p.D269	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PDCD1	HGNC	ENSG00000188389	32	0	0	8	12	60	-	-	-	A	242793270	G	A	242793270	2	1	788	1	0	0	0	0	0	0	0	1	11688	1136	40	1		1	PDCD1	2	242793270	Silent	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	8191526	242793270	406103	8	67704										
FANCD2	0	genome.wustl.edu	37	chr3	10106486	10106486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	aggatgggattgccataaacCtcctgccgctgctgttttct	10	11	1	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	10106486	10106486	C	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.2095	p.L699F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	127	0	0	33	18	35.29	-	-	-	T	10106486	C	T	10106486	3	4	788	1	0	0	0	0	1	0	0	0	5711	681	24	4	2181	4	FANCD2	3	10106486	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		10106486	187915944	9	67705										
SCN11A	0	genome.wustl.edu	37	chr3	38938447	38938447	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tcgatccattccccgcagagGatgcggaataccactaggaa	10	12	0	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	38938447	38938447	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	silent	c.2292	p.I764	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	316	0	0	34	30	46.88	-	-	-	A	38938447	G	A	38938447	2	1	788	1	0	0	0	0	0	0	0	1	14001	1164	41	2		2	SCN11A	3	38938447	Silent	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	28831961	38938447	159083983	10	67706										
RETNLB	0	genome.wustl.edu	37	chr3	108474726	108474726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ccacgaaccacagccatagcCacaagcacagccagtgacag	8	16	0	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	108474726	108474726	C	T	SNP	RETNLB	ENST00000295755	human	ensembl	69_37n	-1	known	missense	c.235	p.G79S	1.000	pfam_Resistin,superfamily_Resistin	pfam_Resistin,superfamily_Resistin	-	no_errors	RETNLB	HGNC	ENSG00000163515	70	0	0	20	6	23.08	-	-	-	T	108474726	C	T	108474726	3	4	788	1	0	0	0	0	1	0	0	0	13320	594	21	4	104	4	RETNLB	3	108474726	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09	69536279	108474726	89547704	11	67707										
DRD3	0	genome.wustl.edu	37	chr3	113890710	113890710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	caccaggccattgccgaagaCgatggccaggatgagcgcgc	14	13	0	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	113890710	113890710	C	T	SNP	DRD3	ENST00000383673	human	ensembl	69_37n	-1	known	missense	c.130	p.V44I	0.481	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Dopa_D3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577	129	0	0	9	13	59.09	-	-	-	T	113890710	C	T	113890710	3	4	788	1	0	0	0	0	1	0	0	0	4793	536	19	1	1096	1	DRD3	3	113890710	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09	5415984	113890710	84131720	12	67708										
KIAA0922	0	genome.wustl.edu	37	chr4	154471282	154471282	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tttcagccatcagttttagaTtttggaatacagtaagtatc	7	6	2	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	4	154471282	154471282	T	C	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	silent	c.297	p.D99	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	276	0	0	170	133	43.89	-	-	-	C	154471282	T	C	154471282	2	2	788	1	0	0	0	0	0	0	0	1	8253	1490	52	5		5	KIAA0922	4	154471282	Silent	SNP	T	TCGA-E2-A15T-01A-11D-A10Y-09		154471282	36682994	13	67709										
PSD2	0	genome.wustl.edu	37	chr5	139202313	139202313	+	Frame_Shift_Del	DEL	G	G	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ccaccatctctgactcagatGggatccacacgctcacctgt							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	5	139202313	139202313	G	-	DEL	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	frame_shift_del	c.1213	p.I406fs	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	54	0	0	13	2	13.33	-	-	-	-	139202313	G	-	139202313	7	5	788	1	0	1	0	1	0	0	0	0	12727	1348	47	0	1235	0	PSD2	5	139202313	Frame_Shift_Del	DEL	G	TCGA-E2-A15T-01A-11D-A10Y-09		139202313	41712947	14	67710										
THBS2	0	genome.wustl.edu	37	chr6	169626380	169626380	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	acgtagggacaattgtctcgTtcattgaagacatctgtaag	10	7	3	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	6	169626380	169626380	T	C	SNP	THBS2	ENST00000366787	human	ensembl	69_37n	-1	known	silent	c.2433	p.E811	0.895	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	185	0	0	32	22	40.74	-	-	-	C	169626380	T	C	169626380	2	2	788	1	0	0	0	0	0	0	0	1	15949	1722	60	5		5	THBS2	6	169626380	Silent	SNP	T	TCGA-E2-A15T-01A-11D-A10Y-09		169626380	1488687	15	67711										
GALNT11	0	genome.wustl.edu	37	chr7	151807732	151807732	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tttggaaatatcatttcgggTaatttaatttttgcatgctc	7	5	1	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	7	151807732	151807732	T	A	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	splice_site	c.1080+2	e6+2	1.000	-	-	-	no_errors	GALNT11	HGNC	ENSG00000178234	391	0	0	171	22	11.4	-	-	-	A	151807732	T	A	151807732	5	1	788	1	0	0	0	0	0	0	1	0	6259	1652	57	5	1104	5	GALNT11	7	151807732	Splice_Site	SNP	T	TCGA-E2-A15T-01A-11D-A10Y-09		151807732	7330931	16	67712										
EFHA2	0	genome.wustl.edu	37	chr8	16944521	16944521	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	aaaagagagaaattaaaggaGatgaagaaaagcgtgcaatg	12	2	0	5			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	16944521	16944521	G	C	SNP	EFHA2	ENST00000318063	human	ensembl	69_37n	1	known	missense	c.826	p.D276H	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHA2	HGNC	ENSG00000155970	504	0	0	147	94	39	-	-	-	C	16944521	G	C	16944521	3	2	788	1	0	0	0	0	1	0	0	0	4979	942	33	2	852	2	EFHA2	8	16944521	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09		16944521	129419501	17	67713										
EXTL3	0	genome.wustl.edu	37	chr8	28595139	28595139	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	acaactccaactactcctgtGagctgtccatggtgctgaca	8	13	0	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	28595139	28595139	G	C	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	1	known	missense	c.2380	p.E794Q	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	241	0	0	26	15	36.59	-	-	-	C	28595139	G	C	28595139	3	2	788	1	0	0	0	0	1	0	0	0	5364	1291	45	2	2390	2	EXTL3	8	28595139	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	11650618	28595139	117768883	18	67714										
FAM75A6	0	genome.wustl.edu	37	chr9	43624850	43624850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ggctgttgatttctgatttgCctgtctctgttgggacaacc	11	9	2	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	43624850	43624850	C	T	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	silent	c.3837	p.R1279	0.001	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	92	0	0	25	3	10.71	-	-	-	T	43624850	C	T	43624850	2	4	788	1	0	0	0	0	0	0	0	1	5667	738	26	4		4	FAM75A6	9	43624850	Silent	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		43624850	97588581	19	67715										
DAB2IP	0	genome.wustl.edu	37	chr9	124522318	124522318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gacggacaatgttttctgggGcgagcacttcgagttccaca	12	10	1	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	124522318	124522318	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	1	known	missense	c.770	p.G257D	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	91	0	0	8	5	38.46	-	-	-	A	124522318	G	A	124522318	3	1	788	1	0	0	0	0	1	0	0	0	4251	1203	42	4	708	4	DAB2IP	9	124522318	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	80897468	124522318	16691113	20	67716										
COL5A1	0	genome.wustl.edu	37	chr9	137687132	137687132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	cgaggggtgaaagaggccccCggggcatcactgggaagcct	17	11	1	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	137687132	137687132	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.2770	p.R924W	0.985	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	128	0	0	24	13	35.14	-	-	-	T	137687132	C	T	137687132	3	4	788	1	0	0	0	0	1	0	0	0	3726	643	23	1	2904	1	COL5A1	9	137687132	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09	13164814	137687132	3526299	21	67717										
PARD3	0	genome.wustl.edu	37	chr10	34620061	34620061	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ttacaggtctccatgccttcAtcatcatcatctaccgcggg	7	14	6	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	10	34620061	34620061	A	T	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.2826	p.D942E	0.316	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	242	1	0.41	28	24	46.15	-	-	-	T	34620061	A	T	34620061	3	4	788	1	0	0	0	0	1	0	0	0	11516	214	8	5	1307	5	PARD3	10	34620061	Missense_Mutation	SNP	A	TCGA-E2-A15T-01A-11D-A10Y-09		34620061	100914686	22	67718										
PTPN5	0	genome.wustl.edu	37	chr11	18765723	18765723	+	Frame_Shift_Del	DEL	C	C	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ttcagcctcgtccagtgcctCcatcactatcggctggggga							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	18765723	18765723	C	-	DEL	PTPN5	ENST00000358540	human	ensembl	69_37n	-1	known	frame_shift_del	c.121	p.E41fs	0.975	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	103	0	0	15	2	11.76	-	-	-	-	18765723	C	-	18765723	7	5	788	1	0	1	0	1	0	0	0	0	12874	864	30	0	1624	0	PTPN5	11	18765723	Frame_Shift_Del	DEL	C	TCGA-E2-A15T-01A-11D-A10Y-09		18765723	116240793	23	67719										
MADD	0	genome.wustl.edu	37	chr11	47303974	47303974	+	Frame_Shift_Del	DEL	G	G	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	aattccgccaacgtgctgcaGggatttcagatgcacacgcg							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	47303974	47303974	G	-	DEL	MADD	ENST00000311027	human	ensembl	69_37n	1	known	frame_shift_del	c.1512	p.G505fs	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	139	0	0	12	2	14.29	-	-	-	-	47303974	G	-	47303974	7	5	788	1	0	1	0	1	0	0	0	0	9219	991	35	0	1542	0	MADD	11	47303974	Frame_Shift_Del	DEL	G	TCGA-E2-A15T-01A-11D-A10Y-09	28538251	47303974	87702542	24	67720										
TBC1D10C	0	genome.wustl.edu	37	chr11	67173127	67173127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	cattggcagggacctgcaccGtcaattccctctgcacgaga	10	14	2	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	67173127	67173127	G	A	SNP	TBC1D10C	ENST00000312390	human	ensembl	69_37n	1	known	missense	c.422	p.R141H	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	87	0	0	42	12	22.22	-	-	-	A	67173127	G	A	67173127	3	1	788	1	0	0	0	0	1	0	0	0	15692	1145	40	1	436	1	TBC1D10C	11	67173127	Missense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09	19869153	67173127	67833389	25	67721										
BCL9L	0	genome.wustl.edu	37	chr11	118769652	118769652	+	Frame_Shift_Del	DEL	G	G	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gggatgatcctcgacaagtcGaactcggggatccccgttgg							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118769652	118769652	G	-	DEL	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	frame_shift_del	c.3972	p.F1324fs	0.993	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	85	0	0	17	2	10.53	-	-	-	-	118769652	G	-	118769652	7	5	788	1	0	1	0	1	0	0	0	0	1386	1049	37	0	531	0	BCL9L	11	118769652	Frame_Shift_Del	DEL	G	TCGA-E2-A15T-01A-11D-A10Y-09	51596525	118769652	16236864	26	67722										
HYOU1	0	genome.wustl.edu	37	chr11	118925916	118925916	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	cgagctgatctgaaagtgcaCagtctgcctctgtgggtcga	13	10	3	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118925916	118925916	C	A	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.400	p.V134L	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	132	0	0	0	12	100	-	-	-	A	118925916	C	A	118925916	3	1	788	1	0	0	0	0	1	0	0	0	7524	478	17	4	2687	4	HYOU1	11	118925916	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09	156264	118925916	16080600	27	67723										
NTM	0	genome.wustl.edu	37	chr11	132180029	132180029	+	Frame_Shift_Del	DEL	A	A	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	caccatacatttcagaagccAagggtacaggtgtccccgtg							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	132180029	132180029	A	-	DEL	NTM	ENST00000539799	human	ensembl	69_37n	1	known	frame_shift_del	c.685	p.K229fs	0.998	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	NTM	HGNC	ENSG00000182667	105	0	0	15	2	11.76	-	-	-	-	132180029	A	-	132180029	7	5	788	1	0	1	0	1	0	0	0	0	10772	131	5	0	789	0	NTM	11	132180029	Frame_Shift_Del	DEL	A	TCGA-E2-A15T-01A-11D-A10Y-09	13254113	132180029	2826487	28	67724										
ANKRD52	0	genome.wustl.edu	37	chr12	56651611	56651611	+	Splice_Site	DEL	C	C	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tcctccctgctcccaactcaCcagcacattgatgttctcct							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	12	56651611	56651611	C	-	DEL	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	splice_site_del	c.111+1	e2+1	1.000	-	-	-	no_errors	ANKRD52	HGNC	ENSG00000139645	87	0	0	15	2	11.76	-	-	-	-	56651611	C	-	56651611	8	5	788	1	0	1	0	1	0	0	1	0	677	521	18	0	3226	0	ANKRD52	12	56651611	Splice_Site	DEL	C	TCGA-E2-A15T-01A-11D-A10Y-09		56651611	77200284	29	67725										
FRY	0	genome.wustl.edu	37	chr13	32869412	32869412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	cactactgaatatttatttcCgtcaccaaactctgggacag	6	11	2	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	13	32869412	32869412	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.8857	p.R2953C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	271	0	0	46	36	43.9	-	-	-	T	32869412	C	T	32869412	3	4	788	1	0	0	0	0	1	0	0	0	6112	652	23	1	9099	1	FRY	13	32869412	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		32869412	82300466	30	67726										
PRPF39	0	genome.wustl.edu	37	chr14	45566145	45566145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tgttgacctttggatacattAtataaacttcttaaaagaaa	5	5	1	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	14	45566145	45566145	A	G	SNP	PRPF39	ENST00000355765	human	ensembl	69_37n	1	known	missense	c.506	p.Y169C	1.000	smart_HAT	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246	252	0	0	94	53	35.81	-	-	-	G	45566145	A	G	45566145	3	3	788	1	0	0	0	0	1	0	0	0	12650	449	16	5	516	5	PRPF39	14	45566145	Missense_Mutation	SNP	A	TCGA-E2-A15T-01A-11D-A10Y-09		45566145	61783395	31	67727										
SYNM	0	genome.wustl.edu	37	chr15	99672941	99672941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	accagggcccaaagaaacttCgtttacctttcagatggatg	9	10	1	2			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	99672941	99672941	C	T	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	missense	c.4373	p.S1458L	0.834	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	157	0	0	15	5	25	-	-	-	T	99672941	C	T	99672941	3	4	788	1	0	0	0	0	1	0	0	0	15547	893	31	1	4389	1	SYNM	15	99672941	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		99672941	2858451	32	67728										
CTCF	0	genome.wustl.edu	37	chr16	67670628	67670628	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	atctggacgacaatgaggatGaggaggagcctgccgtagaa	15	7	1	3			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	67670628	67670628	G	T	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	nonsense	c.1873	p.E625*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	94	0	0	0	29	100	-	-	-	T	67670628	G	T	67670628	4	4	788	1	0	0	0	0	0	1	0	0	4032	1291	45	2	1907	2	CTCF	16	67670628	Nonsense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09		67670628	22684125	33	67729										
HAS3	0	genome.wustl.edu	37	chr16	69148464	69148464	+	Frame_Shift_Del	DEL	C	C	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	agcttcggggatgaccggcaCctcaccaaccgagtcctgag							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	69148464	69148464	C	-	DEL	HAS3	ENST00000306560	human	ensembl	69_37n	1	known	frame_shift_del	c.957	p.L320fs	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044	91	0	0	7	2	22.22	-	-	-	-	69148464	C	-	69148464	7	5	788	1	0	1	0	1	0	0	0	0	7014	506	18	0	967	0	HAS3	16	69148464	Frame_Shift_Del	DEL	C	TCGA-E2-A15T-01A-11D-A10Y-09	1477836	69148464	21206289	34	67730										
FAM83G	0	genome.wustl.edu	37	chr17	18891586	18891586	+	Frame_Shift_Del	DEL	C	C	-													0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gtgccccaggtgcatgcaggCccgctcacacatgtgcagga							TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	17	18891586	18891586	C	-	DEL	FAM83G	ENST00000345041	human	ensembl	69_37n	-1	known	frame_shift_del	c.664	p.A222fs	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	101	0	0	9	2	18.18	-	-	-	-	18891586	C	-	18891586	7	5	788	1	0	1	0	1	0	0	0	0	5684	739	26	0	1823	0	FAM83G	17	18891586	Frame_Shift_Del	DEL	C	TCGA-E2-A15T-01A-11D-A10Y-09		18891586	62303624	35	67731										
NFATC2	0	genome.wustl.edu	37	chr20	50048860	50048860	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	tggaactcctggtggcttccGcagcgcagctgctggttggt	15	11	0	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	20	50048860	50048860	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	69_37n	-1	known	silent	c.2466	p.C822	0.944	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC2	HGNC	ENSG00000101096	102	1	0.97	15	15	50	-	-	-	A	50048860	G	A	50048860	2	1	788	1	0	0	0	0	0	0	0	1	10434	1079	38	1		1	NFATC2	20	50048860	Silent	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09		50048860	12976660	36	67732										
LIF	0	genome.wustl.edu	37	chr22	30639826	30639826	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	aggaggcctcgcaggatgtcGgcggtggcgttgagcttgct	18	9	0	1			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	22	30639826	30639826	G	A	SNP	LIF	ENST00000403987	human	ensembl	69_37n	-1	putative	nonsense	c.244	p.R82*	0.000	NULL	NULL	-	no_errors	LIF	HGNC	ENSG00000128342	432	0	0	8	54	85.71	-	-	-	A	30639826	G	A	30639826	4	1	788	1	0	0	0	0	0	1	0	0	8834	1103	39	1	189	1	LIF	22	30639826	Nonsense_Mutation	SNP	G	TCGA-E2-A15T-01A-11D-A10Y-09		30639826	20664740	37	67733										
SHROOM4	0	genome.wustl.edu	37	chrX	50377366	50377366	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	ccccgggtccctccacttcgCctaccacccatccggctgca	7	22	0	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	50377366	50377366	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.1707	p.R569	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	116	0	0	9	12	57.14	-	-	-	T	50377366	C	T	50377366	2	4	788	1	0	0	0	0	0	0	0	1	14385	738	26	4		4	SHROOM4	23	50377366	Silent	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09		50377366	104893194	38	67734										
GUCY2F	0	genome.wustl.edu	37	chrX	108718516	108718516	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0512820512820513	2	0.932619093069756	0.87719298245614	8.33333333333333	0	0.4	0.991179622791967	0	gtcctgtggtcaggacgaccCctacaggtaagccgtggctc	13	13	1	0			TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	108718516	108718516	C	A	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.650	p.G217V	1.000	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	100	1	0.99	12	5	29.41	-	-	-	A	108718516	C	A	108718516	3	1	788	1	0	0	0	0	1	0	0	0	6949	623	22	4	2748	4	GUCY2F	23	108718516	Missense_Mutation	SNP	C	TCGA-E2-A15T-01A-11D-A10Y-09	58341150	108718516	46552044	39	67735										
KIF1B	0	genome.wustl.edu	37	chr1	10364067	10364067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aggagataacaaagcagcttCgtcggcagaatgtacctcat	10	9	1	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	10364067	10364067	C	T	SNP	KIF1B	ENST00000377083	human	ensembl	69_37n	1	known	missense	c.2824	p.R942C	0.998	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	118	0	0	75	47	38.52	-	-	-	T	10364067	C	T	10364067	3	4	789	1	0	0	0	0	1	0	0	0	8336	884	31	1	2902	1	KIF1B	1	10364067	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		10364067	238886554	1	67736										
TYW3	0	genome.wustl.edu	37	chr1	75229641	75229641	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	actaacttacatcccaagatCaaagagaaaaataactcatc	3	10	2	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	75229641	75229641	C	G	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	1	known	missense	c.624	p.I208M	0.052	NULL	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	175	0	0	77	44	36.36	-	-	-	G	75229641	C	G	75229641	3	3	789	1	0	0	0	0	1	0	0	0	16917	816	29	2	646	2	TYW3	1	75229641	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	64865574	75229641	174020980	2	67737										
VPS45	0	genome.wustl.edu	37	chr1	150054883	150054883	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gtggttggagaactgtctcgAttggtcagtgaacggaatct	14	6	3	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	150054883	150054883	A	C	SNP	VPS45	ENST00000369130	human	ensembl	69_37n	1	known	silent	c.1020	p.R340	0.998	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	254	0	0	347	51	12.78	-	-	-	C	150054883	A	C	150054883	2	2	789	1	0	0	0	0	0	0	0	1	17308	320	12	5		5	VPS45	1	150054883	Silent	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09	74825242	150054883	99195738	3	67738										
HCN3	0	genome.wustl.edu	37	chr1	155255046	155255046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	actatgagcaccgctaccagGgcaagatgttcgatgaggaa	12	9	0	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	155255046	155255046	G	T	SNP	HCN3	ENST00000368358	human	ensembl	69_37n	1	known	missense	c.1180	p.G394C	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630	67	0	0	109	22	16.79	-	-	-	T	155255046	G	T	155255046	3	4	789	1	0	0	0	0	1	0	0	0	7049	1232	43	4	1198	4	HCN3	1	155255046	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	5200163	155255046	93995575	4	67739										
TNN	0	genome.wustl.edu	37	chr1	175046741	175046741	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ttcaggttgacgctgaccctCagcccctcagtgacgatggg	12	13	3	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	175046741	175046741	C	G	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.187	p.Q63E	0.001	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	40	0	0	57	15	20.83	-	-	-	G	175046741	C	G	175046741	3	3	789	1	0	0	0	0	1	0	0	0	16418	827	29	2	189	2	TNN	1	175046741	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	19791695	175046741	74203880	5	67740										
KIAA1804	0	genome.wustl.edu	37	chr1	233482294	233482294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aggaccaccaaaatgagcacAgcaggcacctatgcctggat	10	12	0	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	1	233482294	233482294	A	G	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	silent	c.912	p.T304	0.357	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	194	0	0	120	36	23.08	-	-	-	G	233482294	A	G	233482294	2	3	789	1	0	0	0	0	0	0	0	1	8311	175	7	5		5	KIAA1804	1	233482294	Silent	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09	58435553	233482294	15768327	6	67741										
EPAS1	0	genome.wustl.edu	37	chr2	46587815	46587815	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aaagcaaagacatgtccacaGagcgggacttcttcatgagg	11	9	2	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	46587815	46587815	G	C	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	1	known	missense	c.493	p.E165Q	0.999	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	83	0	0	63	22	25.88	-	-	-	C	46587815	G	C	46587815	3	2	789	1	0	0	0	0	1	0	0	0	5187	943	33	2	511	2	EPAS1	2	46587815	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		46587815	196611558	7	67742										
SLC1A4	0	genome.wustl.edu	37	chr2	65217239	65217239	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cttcagtccagcgacctgggGctggaggactcggggcctcc	15	14	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	65217239	65217239	G	T	SNP	SLC1A4	ENST00000234256	human	ensembl	69_37n	1	known	silent	c.462	p.G154	0.736	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A4	HGNC	ENSG00000115902	41	0	0	9	10	52.63	-	-	-	T	65217239	G	T	65217239	2	4	789	1	0	0	0	0	0	0	0	1	14523	1190	42	4		4	SLC1A4	2	65217239	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	18629424	65217239	177982134	8	67743										
LYG1	0	genome.wustl.edu	37	chr2	99907849	99907849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	atatttcaggaggtatggcaTgtctatttcagccagccttt	9	8	3	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	99907849	99907849	T	C	SNP	LYG1	ENST00000308528	human	ensembl	69_37n	-1	known	missense	c.184	p.M62V	0.996	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG1	HGNC	ENSG00000144214	240	0	0	226	69	23.39	-	-	-	C	99907849	T	C	99907849	3	2	789	1	0	0	0	0	1	0	0	0	9171	1464	51	5	412	5	LYG1	2	99907849	Missense_Mutation	SNP	T	TCGA-E2-A1AZ-01A-11D-A12Q-09	34690610	99907849	143291524	9	67744										
IWS1	0	genome.wustl.edu	37	chr2	128250923	128250923	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aaactcctatctggtagaggTgagagccattctttgatggc	11	8	2	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	128250923	128250923	T	G	SNP	IWS1	ENST00000295321	human	ensembl	69_37n	-1	known	silent	c.1863	p.S621	0.935	superfamily_TFIIS_N	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166	117	1	0.85	103	23	18.25	-	-	-	G	128250923	T	G	128250923	2	3	789	1	0	0	0	0	0	0	0	1	7985	1683	59	5		5	IWS1	2	128250923	Silent	SNP	T	TCGA-E2-A1AZ-01A-11D-A12Q-09	28343074	128250923	114948450	10	67745										
DARS	0	genome.wustl.edu	37	chr2	136700974	136700974	+	Nonsense_Mutation	SNP	G	G	A													0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aacatgtaactcaacgtcttGctgtgtacagcttccaattt							TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	136700974	136700974	G	A	SNP	DARS	ENST00000264161	human	ensembl	69_37n	-1	known	nonsense	c.397	p.Q133*	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,tigrfam_Asp-tRNA-synth_arc/euk	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	-	no_errors	DARS	HGNC	ENSG00000115866	372	0	0	264	74	21.89	-	-	-	A	136700974	G	A	136700974	4	1	789	1	0	0	0	0	0	1	0	0	4273	1328	46	4	1156	4	DARS	2	136700974	Nonsense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	8450051	136700974	106498399	11	67746	485	2								
DARS	0	genome.wustl.edu	37	chr2	136700975	136700975	+	Missense_Mutation	SNP	C	C	A													0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	acatgtaactcaacgtcttgCtgtgtacagcttccaatttt							TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	136700975	136700975	C	A	SNP	DARS	ENST00000264161	human	ensembl	69_37n	-1	known	missense	c.396	p.Q132H	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,tigrfam_Asp-tRNA-synth_arc/euk	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	-	no_errors	DARS	HGNC	ENSG00000115866	372	0	0	267	74	21.7	-	-	-	A	136700975	C	A	136700975	3	1	789	1	0	0	0	0	1	0	0	0	4273	796	28	4	1157	4	DARS	2	136700975	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	1	136700975	106498398	12	67747	485	2								
ARL6IP6	0	genome.wustl.edu	37	chr2	153575347	153575347	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gtggtcagagcccagaaagcGctcggtgctcccgccggacg	15	14	1	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	153575347	153575347	G	T	SNP	ARL6IP6	ENST00000326446	human	ensembl	69_37n	1	known	missense	c.209	p.R70L	0.000	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	34	0	0	37	8	17.78	-	-	-	T	153575347	G	T	153575347	3	4	789	1	0	0	0	0	1	0	0	0	949	1087	38	3	211	3	ARL6IP6	2	153575347	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	16874372	153575347	89624026	13	67748										
TANC1	0	genome.wustl.edu	37	chr2	160006902	160006902	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gcacagctctgagtcaaggcAtcagtccttgctccacacta	8	14	3	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	2	160006902	160006902	A	C	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.517	p.I173L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	114	0	0	103	22	17.6	-	-	-	C	160006902	A	C	160006902	3	2	789	1	0	0	0	0	1	0	0	0	15636	217	8	5	535	5	TANC1	2	160006902	Missense_Mutation	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09	6431555	160006902	83192471	14	67749										
COL7A1	0	genome.wustl.edu	37	chr3	48627949	48627949	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tccagggacgggtccccaggCcaccctcactcgcgttgcat	11	17	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	3	48627949	48627949	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.1849	p.A617S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	148	1	0.67	96	56	36.6	-	-	-	A	48627949	C	A	48627949	3	1	789	1	0	0	0	0	1	0	0	0	3734	739	26	4	7405	4	COL7A1	3	48627949	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		48627949	149394481	15	67750										
C3orf27	0	genome.wustl.edu	37	chr3	128292138	128292138	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ctgggtcatggaaaatagctGaaagcaaagttgctcagagg	13	6	2	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	3	128292138	128292138	G	A	SNP	C3orf27	ENST00000356020	human	ensembl	69_37n	-1	known	silent	c.435	p.F145	0.000	NULL	NULL	-	no_errors	C3orf27	HGNC	ENSG00000198685	31	0	0	34	6	15	-	-	-	A	128292138	G	A	128292138	2	1	789	1	0	0	0	0	0	0	0	1	2239	1281	45	2		2	C3orf27	3	128292138	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	79664189	128292138	69730292	16	67751										
COL6A5	0	genome.wustl.edu	37	chr3	130116760	130116760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	taaggataaatctgcatcccGgggccaggtatccatattac	9	10	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	3	130116760	130116760	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3902	p.R1301L	0.079	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	286	0	0	168	53	23.98	-	-	-	T	130116760	G	T	130116760	3	4	789	1	0	0	0	0	1	0	0	0	3732	1116	39	3	3932	3	COL6A5	3	130116760	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	1824622	130116760	67905670	17	67752										
TOPBP1	0	genome.wustl.edu	37	chr3	133347430	133347430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tgactgggcctctttcagttGagggctggcagaaagagcga	15	8	2	4			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	3	133347430	133347430	G	C	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.2668	p.Q890E	0.996	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	253	0	0	176	48	21.33	-	-	-	C	133347430	G	C	133347430	3	2	789	1	0	0	0	0	1	0	0	0	16465	1299	45	2	1956	2	TOPBP1	3	133347430	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	3230670	133347430	64675000	18	67753										
CASP6	0	genome.wustl.edu	37	chr4	110610542	110610542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tagcattgaggcaaaacaggGaacctgcttctttccaattg	9	9	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	4	110610542	110610542	G	A	SNP	CASP6	ENST00000265164	human	ensembl	69_37n	-1	known	missense	c.826	p.P276S	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP6	HGNC	ENSG00000138794	151	0	0	95	16	14.41	-	-	-	A	110610542	G	A	110610542	3	1	789	1	0	0	0	0	1	0	0	0	2700	1174	41	2	59	2	CASP6	4	110610542	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		110610542	80543734	19	67754										
HIST1H1B	0	genome.wustl.edu	37	chr6	27834744	27834744	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gccttgggcttggcaggactCttggttgcctttttcggttt	13	9	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	6	27834744	27834744	C	G	SNP	HIST1H1B	ENST00000331442	human	ensembl	69_37n	-1	known	missense	c.564	p.K188N	1.000	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357	157	0	0	92	29	23.97	-	-	-	G	27834744	C	G	27834744	3	3	789	1	0	0	0	0	1	0	0	0	7174	912	32	2	120	2	HIST1H1B	6	27834744	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		27834744	143280323	20	67755										
CUL9	0	genome.wustl.edu	37	chr6	43188323	43188323	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gtgccatcgtctcctcgccaGaggtcatctccaaggtatcc	9	15	3	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	6	43188323	43188323	G	C	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.6409	p.E2137Q	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	117	0	0	89	29	24.58	-	-	-	C	43188323	G	C	43188323	3	2	789	1	0	0	0	0	1	0	0	0	4092	943	33	2	6531	2	CUL9	6	43188323	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	15353579	43188323	127926744	21	67756										
CENPQ	0	genome.wustl.edu	37	chr6	49438722	49438722	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aaaaaaaataaaaatcatctGaaagatctgtcttctgaagg	6	5	5	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	6	49438722	49438722	G	C	SNP	CENPQ	ENST00000335783	human	ensembl	69_37n	1	known	silent	c.138	p.L46	0.005	NULL	NULL	-	no_errors	CENPQ	HGNC	ENSG00000031691	124	0	0	65	17	20.73	-	-	-	C	49438722	G	C	49438722	2	2	789	1	0	0	0	0	0	0	0	1	3270	1277	45	2		2	CENPQ	6	49438722	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	6250399	49438722	121676345	22	67757										
CCDC129	0	genome.wustl.edu	37	chr7	31690768	31690768	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gttctcagtgcacagtccatGagatggaagccatgaagacg	12	9	1	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	7	31690768	31690768	G	C	SNP	CCDC129	ENST00000451887	human	ensembl	69_37n	1	known	missense	c.2674	p.E892Q	0.902	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347	157	0	0	90	65	41.94	-	-	-	C	31690768	G	C	31690768	3	2	789	1	0	0	0	0	1	0	0	0	2789	1291	45	2	2638	2	CCDC129	7	31690768	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		31690768	127447895	23	67758										
WBSCR22	0	genome.wustl.edu	37	chr7	73100970	73100970	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gtttctgccttaccagctcaCggatgattgatatccagacc	8	12	2	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	7	73100970	73100970	C	A	SNP	WBSCR22	ENST00000265758	human	ensembl	69_37n	1	known	silent	c.91	p.R31	0.991	NULL	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462	354	0	0	241	78	24.45	-	-	-	A	73100970	C	A	73100970	2	1	789	1	0	0	0	0	0	0	0	1	17362	527	19	3		3	WBSCR22	7	73100970	Silent	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	41410202	73100970	86037693	24	67759										
CUL1	0	genome.wustl.edu	37	chr7	148454195	148454195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	acctcaatagacattgggttCgccgtgaatgtgacgaagga	12	8	1	3			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	7	148454195	148454195	C	T	SNP	CUL1	ENST00000325222	human	ensembl	69_37n	1	known	missense	c.436	p.R146C	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130	295	0	0	248	72	22.5	-	-	-	T	148454195	C	T	148454195	3	4	789	1	0	0	0	0	1	0	0	0	4085	884	31	1	446	1	CUL1	7	148454195	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	75353225	148454195	10684468	25	67760										
KCNH2	0	genome.wustl.edu	37	chr7	150645546	150645546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cctcacccttgtccgtgcgcCtgcggaaggacaacttgcgc	11	16	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	7	150645546	150645546	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	69_37n	-1	known	missense	c.2678	p.R893K	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	42	0	0	41	17	28.81	-	-	-	T	150645546	C	T	150645546	3	4	789	1	0	0	0	0	1	0	0	0	8086	681	24	4	821	4	KCNH2	7	150645546	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	2191351	150645546	8493117	26	67761										
ADAM7	0	genome.wustl.edu	37	chr8	24300020	24300020	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ggagtagagggtcaacaactGgttcgtcctaaaaagcttcc	11	9	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	8	24300020	24300020	G	C	SNP	ADAM7	ENST00000175238	human	ensembl	69_37n	1	known	silent	c.87	p.L29	0.886	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	242	0	0	280	55	16.37	-	-	-	C	24300020	G	C	24300020	2	2	789	1	0	0	0	0	0	0	0	1	251	1335	47	4		4	ADAM7	8	24300020	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		24300020	122064002	27	67762										
CA2	0	genome.wustl.edu	37	chr8	86389385	86389385	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tcactaacttcgatcctcgtGgcctccttcctgaatccttg	6	15	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	8	86389385	86389385	G	C	SNP	CA2	ENST00000285379	human	ensembl	69_37n	1	known	missense	c.544	p.G182R	0.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267	255	0	0	241	114	32.11	-	-	-	C	86389385	G	C	86389385	3	2	789	1	0	0	0	0	1	0	0	0	2541	1348	47	4	566	4	CA2	8	86389385	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	62089365	86389385	59974637	28	67763										
PKHD1L1	0	genome.wustl.edu	37	chr8	110461681	110461681	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tgacaggcttagatctgattAcacaacactattatgtgaaa	7	7	1	4			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	8	110461681	110461681	A	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.6140	p.Y2047S	0.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	234	0	0	179	27	13.11	-	-	-	C	110461681	A	C	110461681	3	2	789	1	0	0	0	0	1	0	0	0	12046	391	14	5	6298	5	PKHD1L1	8	110461681	Missense_Mutation	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09	24072296	110461681	35902341	29	67764										
KCNQ3	0	genome.wustl.edu	37	chr8	133182583	133182583	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aggtgagtccccacttgcctGaagaaaggaaaagagacgac	12	9	0	4			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	8	133182583	133182583	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	silent	c.1233	p.F411	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	74	0	0	57	28	32.56	-	-	-	A	133182583	G	A	133182583	2	1	789	1	0	0	0	0	0	0	0	1	8138	1281	45	2		2	KCNQ3	8	133182583	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	22720902	133182583	13181439	30	67765										
BAI1	0	genome.wustl.edu	37	chr8	143546131	143546131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cgcctgccagatgctgtgccGctggctggacgcgtgtctgg	16	13	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	8	143546131	143546131	G	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.572	p.R191H	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	16	0	0	12	7	36.84	-	-	-	A	143546131	G	A	143546131	3	1	789	1	0	0	0	0	1	0	0	0	1302	1087	38	1	574	1	BAI1	8	143546131	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	10363548	143546131	2817891	31	67766										
TRIM14	0	genome.wustl.edu	37	chr9	100862335	100862335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cctgtacacctggagggtaaGctgcgtgtttttatcaatga	11	8	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	9	100862335	100862335	G	A	SNP	TRIM14	ENST00000341469	human	ensembl	69_37n	-1	known	missense	c.415	p.L139F	0.601	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM14	HGNC	ENSG00000106785	337	0	0	212	67	24.01	-	-	-	A	100862335	G	A	100862335	3	1	789	1	0	0	0	0	1	0	0	0	16585	971	34	4	929	4	TRIM14	9	100862335	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		100862335	40351096	32	67767										
PNPLA7	0	genome.wustl.edu	37	chr9	140400143	140400143	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cttcctgctggccagggtctCatccgtgtgactctctgagt	11	13	2	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	9	140400143	140400143	C	T	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	missense	c.1396	p.E466K	0.677	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	163	0	0	81	76	48.1	-	-	-	T	140400143	C	T	140400143	3	4	789	1	0	0	0	0	1	0	0	0	12244	835	29	2	2720	2	PNPLA7	9	140400143	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	39537808	140400143	813288	33	67768										
CHST3	0	genome.wustl.edu	37	chr10	73767170	73767170	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gaggagccgcccagaccggcCgtggcggggccccggcgcca	18	17	0	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	10	73767170	73767170	C	A	SNP	CHST3	ENST00000373115	human	ensembl	69_37n	1	known	silent	c.381	p.A127	0.000	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863	23	0	0	29	7	19.44	-	-	-	A	73767170	C	A	73767170	2	1	789	1	0	0	0	0	0	0	0	1	3434	639	23	3		3	CHST3	10	73767170	Silent	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		73767170	61767577	34	67769										
MARCH5	0	genome.wustl.edu	37	chr10	94110927	94110927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	atatttacgacaggcacaccGcaaaattctgaattatccag	6	10	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	10	94110927	94110927	G	A	SNP	MARCH5	ENST00000358935	human	ensembl	69_37n	1	known	missense	c.800	p.R267H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060	204	2	0.97	218	30	12	-	-	-	A	94110927	G	A	94110927	3	1	789	1	0	0	0	0	1	0	0	0	9375	1087	38	1	822	1	MARCH5	10	94110927	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	20343757	94110927	41423820	35	67770										
NKX6-2	0	genome.wustl.edu	37	chr10	134598422	134598422	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	cccccaccccgcgggtcctcAcaaggcgtcccccgcgccgc	10	24	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	10	134598422	134598422	A	G	SNP	NKX6-2	ENST00000368592	human	ensembl	69_37n	-1	known	nonstop	c.832	p.*278R	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	NKX6-2	HGNC	ENSG00000148826	70	0	0	82	14	14.43	-	-	-	G	134598422	A	G	134598422	4	3	789	1	0	0	0	0	0	0	0	0	10530	172	6	5	5	5	NKX6-2	10	134598422	Nonstop_Mutation	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09	40487495	134598422	936325	36	67771										
CDC42BPG	0	genome.wustl.edu	37	chr11	64597720	64597720	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ctcggtgccaagcgcaagtcGatcctggtctggtagaggga	15	10	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	11	64597720	64597720	G	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	nonsense	c.3313	p.R1105*	0.998	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	134	0	0	165	42	20.29	-	-	-	A	64597720	G	A	64597720	4	1	789	1	0	0	0	0	0	1	0	0	3103	1066	37	1	1378	1	CDC42BPG	11	64597720	Nonsense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		64597720	70408796	37	67772										
ALDH3B1	0	genome.wustl.edu	37	chr11	67786655	67786655	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gcagggaactgtgtggtgctGaagccatcggagattagcaa	15	7	0	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	11	67786655	67786655	G	A	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	70	0	0	98	16	14.04	-	-	-	A	67786655	G	A	67786655	1	1	789	0	1	0	0	0	0	0	0	0	499	1277	45	2		2	ALDH3B1	11	67786655	RNA	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	3188935	67786655	67219861	38	67773										
SHANK2	0	genome.wustl.edu	37	chr11	70338443	70338443	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aaggtacggccactcacgttCatgtctgagcccgccgggaa	12	13	3	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	11	70338443	70338443	C	A	SNP	SHANK2	ENST00000412252	human	ensembl	69_37n	-1	novel	nonsense	c.667	p.E223*	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SHANK2	HGNC	ENSG00000162105	22	0	0	19	15	44.12	-	-	-	A	70338443	C	A	70338443	4	1	789	1	0	0	0	0	0	1	0	0	14354	826	29	2	3133	2	SHANK2	11	70338443	Nonsense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	2551788	70338443	64668073	39	67774										
C2CD3	0	genome.wustl.edu	37	chr11	73809103	73809103	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ccaggaaatgggctggcctaGggctgaagggagggagtgtt	19	6	0	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	11	73809103	73809103	G	C	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.2930	p.P977R	0.008	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	192	0	0	173	47	21.36	-	-	-	C	73809103	G	C	73809103	3	2	789	1	0	0	0	0	1	0	0	0	2174	1000	35	4	3025	4	C2CD3	11	73809103	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	3470660	73809103	61197413	40	67775										
CNTN1	0	genome.wustl.edu	37	chr12	41337930	41337930	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tccttcaatggctatgtgatCgattttaacaaagagaatat	7	6	1	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	12	41337930	41337930	C	A	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	silent	c.1641	p.I547	0.296	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	248	0	0	148	47	24.1	-	-	-	A	41337930	C	A	41337930	2	1	789	1	0	0	0	0	0	0	0	1	3670	874	31	3		3	CNTN1	12	41337930	Silent	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		41337930	92513965	41	67776										
UNC119B	0	genome.wustl.edu	37	chr12	121148295	121148295	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gcgatgagcgggtctaacccGaaggctgcggccgcggcgtc	17	13	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	12	121148295	121148295	G	A	SNP	UNC119B	ENST00000344651	human	ensembl	69_37n	1	known	silent	c.18	p.P6	0.836	NULL	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119B	HGNC	ENSG00000175970	12	0	0	10	9	47.37	-	-	-	A	121148295	G	A	121148295	2	1	789	1	0	0	0	0	0	0	0	1	17080	1045	37	1		1	UNC119B	12	121148295	Silent	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	79810365	121148295	12703600	42	67777										
DCLK1	0	genome.wustl.edu	37	chr13	36348770	36348770	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aggagctggctgcgccttgtAccggctcctcacatcctggt	12	14	1	0			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	13	36348770	36348770	A	T	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	missense	c.2125	p.Y709N	0.900	NULL	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	115	0	0	72	39	35.14	-	-	-	T	36348770	A	T	36348770	3	4	789	1	0	0	0	0	1	0	0	0	4322	406	14	5		5	DCLK1	13	36348770	Missense_Mutation	SNP	A	TCGA-E2-A1AZ-01A-11D-A12Q-09		36348770	78821108	43	67778										
SEPT1	0	genome.wustl.edu	37	chr16	30392785	30392785	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tcctcgatgaatttcaccacCggaagccagctgggtgtggg	13	11	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	16	30392785	30392785	C	A	SNP	SEPT1	ENST00000572252	human	ensembl	69_37n	-1	known	missense	c.206	p.R69L	0.001	NULL	pfam_Cell_div_GTP-bd	-	no_errors	SEPT1	HGNC	ENSG00000180096	113	0	0	111	34	23.29	-	-	-	A	30392785	C	A	30392785	3	1	789	1	0	0	0	0	1	0	0	0	14147	639	23	3	816	3	SEPT1	16	30392785	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		30392785	59961968	44	67779										
COIL	0	genome.wustl.edu	37	chr17	55028115	55028116	+	Frame_Shift_Del	DEL	TT	TT	-													0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aggttgctttattttttctcTtgttttttttgctgacagtc							TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	17	55028115	55028116	TT	-	DEL	COIL	ENST00000240316	human	ensembl	69_37n	-1	known	frame_shift_del	c.488_487	p.K163fs	0.841:0.831	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058	541	0	0	353	70	15.98	-	-	-	-	55028116	TT	-	55028115	7	5	789	1	0	1	0	1	0	0	0	0	3695	1609	56	0	1266	0	COIL	17	55028115	Frame_Shift_Del	DEL	TT	TCGA-E2-A1AZ-01A-11D-A12Q-09		55028115	26167095	45	67780										
ITGB4	0	genome.wustl.edu	37	chr17	73748569	73748569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tatcgtggacgcccagagcgGggaggactacgacagcttcc	14	12	0	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	17	73748569	73748569	G	A	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	1	known	missense	c.4019	p.G1340E	1.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	49	0	0	30	23	42.59	-	-	-	A	73748569	G	A	73748569	3	1	789	1	0	0	0	0	1	0	0	0	7951	1232	43	4	4141	4	ITGB4	17	73748569	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	18720454	73748569	7446641	46	67781										
SIGLEC8	0	genome.wustl.edu	37	chr19	51961309	51961309	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tccctcttcctggcgtctctGatgctcagggagcagtcgtt	11	13	3	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	19	51961309	51961309	G	C	SNP	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	missense	c.333	p.I111M	0.077	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	350	0	0	205	160	43.84	-	-	-	C	51961309	G	C	51961309	3	2	789	1	0	0	0	0	1	0	0	0	14403	1280	45	2	1194	2	SIGLEC8	19	51961309	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09		51961309	7167674	47	67782										
ZNF611	0	genome.wustl.edu	37	chr19	53208630	53208630	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gtaaggtttctctccactatGaattctagtatgttttgcca	7	8	2	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	19	53208630	53208630	G	C	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.1678	p.H560D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	271	1	0.37	193	125	39.31	-	-	-	C	53208630	G	C	53208630	3	2	789	1	0	0	0	0	1	0	0	0	18133	1290	45	2	443	2	ZNF611	19	53208630	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	1247321	53208630	5920353	48	67783										
ZNF665	0	genome.wustl.edu	37	chr19	53668314	53668314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	ctctccagaatgaattccccGatgacttgcaaggtgtgaat	9	10	1	4			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	19	53668314	53668314	G	A	SNP	ZNF665	ENST00000396424	human	ensembl	69_37n	-1	known	missense	c.1429	p.R477W	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497	120	0	0	130	27	17.2	-	-	-	A	53668314	G	A	53668314	3	1	789	1	0	0	0	0	1	0	0	0	18169	1057	37	1	611	1	ZNF665	19	53668314	Missense_Mutation	SNP	G	TCGA-E2-A1AZ-01A-11D-A12Q-09	459684	53668314	5460669	49	67784										
NRK	0	genome.wustl.edu	37	chrX	105152799	105152799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	tagagtcctgcatggggaacCctctcagccaaggtggctac	12	12	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	X	105152799	105152799	C	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	1	known	missense	c.1169	p.P390H	0.255	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	64	0	0	46	18	28.12	-	-	-	A	105152799	C	A	105152799	3	1	789	1	0	0	0	0	1	0	0	0	10728	623	22	4	1216	4	NRK	23	105152799	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09		105152799	50117761	50	67785										
TRPC5	0	genome.wustl.edu	37	chrX	111097215	111097215	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	gctatagacagcatgggaaaCaggaacccaatggtcatgca	11	9	1	1			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	X	111097215	111097215	C	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	130	0	0	114	40	25.97	-	-	-	A	111097215	C	A	111097215	2	1	789	1	0	0	0	0	0	0	0	1	16678	465	17	4		4	TRPC5	23	111097215	Silent	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	5944416	111097215	44173345	51	67786										
ODZ1	0	genome.wustl.edu	37	chrX	123556236	123556236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.274509803921569	14	0.000111540160711583	3.50978564771668	5.59251559251559	1.81756756756757	0.0655954788343701	0.454981406383078	10	aatgcggtttactttcctctCgtctgtttcagctatgaaga	8	9	3	2			TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f961c932-cf37-47c8-8520-8d0d444dc94f	d486a6d4-f7b9-4df1-b14f-df434c457363	X	123556236	123556236	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.4357	p.E1453K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	141	0	0	117	22	15.83	-	-	-	T	123556236	C	T	123556236	3	4	789	1	0	0	0	0	1	0	0	0	10907	893	31	1	3877	1	ODZ1	23	123556236	Missense_Mutation	SNP	C	TCGA-E2-A1AZ-01A-11D-A12Q-09	12459021	123556236	31714324	52	67787										
PRAMEF11	0	genome.wustl.edu	37	chr1	12887489	12887489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	atagaaggaggcaggtgaggTattcatccagagtcctgttc	13	7	1	3			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	12887489	12887489	T	C	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.368	p.Y123C	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	188	0	0	138	45	24.19	-	-	-	C	12887489	T	C	12887489	3	2	790	1	0	0	0	0	1	0	0	0	12504	1638	57	5	950	5	PRAMEF11	1	12887489	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09		12887489	236363132	1	67788										
RAP1GAP	0	genome.wustl.edu	37	chr1	21924472	21924472	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	accagctggggcatgtgctgCtcagatgcttccagctggat	13	11	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	21924472	21924472	C	T	SNP	RAP1GAP	ENST00000290101	human	ensembl	69_37n	-1	known	silent	c.2157	p.E719	0.995	NULL	pfam_Rap_GAP,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP	-	no_errors	RAP1GAP	HGNC	ENSG00000076864	28	0	0	15	6	28.57	-	-	-	T	21924472	C	T	21924472	2	4	790	1	0	0	0	0	0	0	0	1	13120	796	28	4		4	RAP1GAP	1	21924472	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	9036983	21924472	227326149	2	67789										
IGSF8	0	genome.wustl.edu	37	chr1	160063723	160063723	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tagggagctccagcctccacGgccaagtctgaccggattcc	11	15	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	160063723	160063723	G	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	silent	c.681	p.A227	0.021	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	48	0	0	52	10	15.87	-	-	-	C	160063723	G	C	160063723	2	2	790	1	0	0	0	0	0	0	0	1	7658	1103	39	3		3	IGSF8	1	160063723	Silent	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	138139251	160063723	89186898	3	67790										
OR2G3	0	genome.wustl.edu	37	chr1	247769043	247769043	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	atcatcatctcatatctggaTccccctcttcataccccaat	2	16	6	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	247769043	247769043	T	G	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	1	known	missense	c.156	p.D52E	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	533	0	0	335	399	54.14	-	-	-	G	247769043	T	G	247769043	3	3	790	1	0	0	0	0	1	0	0	0	11072	1432	50	5	158	5	OR2G3	1	247769043	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09	87705320	247769043	1481578	4	67791										
NEB	0	genome.wustl.edu	37	chr2	152573967	152573967	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ttactttcttggcaaattctAtatctggaggatcagccaga	8	8	4	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	2	152573967	152573967	A	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.785	p.I262T	0.999	pfam_Nebulin_35r-motif,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	443	0	0	300	86	22.28	-	-	-	G	152573967	A	G	152573967	3	3	790	1	0	0	0	0	1	0	0	0	10374	449	16	5	25593	5	NEB	2	152573967	Missense_Mutation	SNP	A	TCGA-E2-A1B0-01A-11D-A12Q-09		152573967	90625406	5	67792										
CCDC37	0	genome.wustl.edu	37	chr3	126153123	126153123	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	accgtgcagatgctgaccatCattgagcaccagctggatga	11	11	1	4			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	3	126153123	126153123	C	T	SNP	CCDC37	ENST00000393425	human	ensembl	69_37n	1	known	silent	c.1530	p.I510	0.076	NULL	superfamily_SuperAg_toxin_C_Staph/Strep	-	no_errors	CCDC37	HGNC	ENSG00000163885	25	0	0	12	6	33.33	-	-	-	T	126153123	C	T	126153123	2	4	790	1	0	0	0	0	0	0	0	1	2835	816	29	2		2	CCDC37	3	126153123	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		126153123	71869307	6	67793										
RAB43	0	genome.wustl.edu	37	chr3	128810076	128810076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	caggaaggcctcctccacgtTgctcgagtccttggcagacg	12	14	0	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	3	128810076	128810076	T	C	SNP	RAB43	ENST00000315150	human	ensembl	69_37n	-1	known	missense	c.502	p.N168D	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB43	HGNC	ENSG00000172780	17	0	0	6	8	57.14	-	-	-	C	128810076	T	C	128810076	3	2	790	1	0	0	0	0	1	0	0	0	13028	1812	63	5	140	5	RAB43	3	128810076	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09	2656953	128810076	69212354	7	67794										
CDH6	0	genome.wustl.edu	37	chr5	31294332	31294332	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	atattcaccaaggaggtttaCacagccactgtccctgaaat	7	11	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	5	31294332	31294332	C	A	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	nonsense	c.492	p.Y164*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	69	0	0	61	16	20.78	-	-	-	A	31294332	C	A	31294332	4	1	790	1	0	0	0	0	0	1	0	0	3143	489	17	4	498	4	CDH6	5	31294332	Nonsense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		31294332	149620928	8	67795										
ITPR3	0	genome.wustl.edu	37	chr6	33653896	33653896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gcgagacgctgcagttcctgGacatcatgtgcggcagcacc	13	13	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	33653896	33653896	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	missense	c.5734	p.D1912N	1.000	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	48	0	0	42	12	22.22	-	-	-	A	33653896	G	A	33653896	3	1	790	1	0	0	0	0	1	0	0	0	7976	1174	41	2	5900	2	ITPR3	6	33653896	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		33653896	137461171	9	67796										
DAAM2	0	genome.wustl.edu	37	chr6	39847226	39847226	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	cagccttctcacccactgaaGtccttcaactgggtgaagct	8	14	2	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	39847226	39847226	G	A	SNP	DAAM2	ENST00000274867	human	ensembl	69_37n	1	known	silent	c.1818	p.K606	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM2	HGNC	ENSG00000146122	85	0	0	34	16	32	-	-	-	A	39847226	G	A	39847226	2	1	790	1	0	0	0	0	0	0	0	1	4248	1020	36	4		4	DAAM2	6	39847226	Silent	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	6193330	39847226	131267841	10	67797										
REV3L	0	genome.wustl.edu	37	chr6	111688818	111688818	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gtgctgtagtggggagtataCatggacttacatccattttt	11	6	0	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	111688818	111688818	C	A	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.6173	p.C2058F	0.118	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	347	0	0	194	69	26.24	-	-	-	A	111688818	C	A	111688818	3	1	790	1	0	0	0	0	1	0	0	0	13323	478	17	4	3295	4	REV3L	6	111688818	Missense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	71841592	111688818	59426249	11	67798										
SASH1	0	genome.wustl.edu	37	chr6	148852768	148852768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gggttctgtagaaagtcttcGcagttctctcagtgggcaga	13	8	4	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	148852768	148852768	G	A	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.1535	p.R512H	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	140	0	0	78	15	16.13	-	-	-	A	148852768	G	A	148852768	3	1	790	1	0	0	0	0	1	0	0	0	13935	1087	38	1	1585	1	SASH1	6	148852768	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	37163950	148852768	22262299	12	67799										
SMARCD3	0	genome.wustl.edu	37	chr7	150937202	150937202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tgggcttgggccccaccttaCtgtccagagcactgatctcc	10	15	1	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	7	150937202	150937202	C	T	SNP	SMARCD3	ENST00000262188	human	ensembl	69_37n	-1	known	missense	c.1169	p.S390N	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014	179	0	0	91	33	26.61	-	-	-	T	150937202	C	T	150937202	3	4	790	1	0	0	0	0	1	0	0	0	14868	565	20	4	298	4	SMARCD3	7	150937202	Missense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		150937202	8201461	13	67800										
DLC1	0	genome.wustl.edu	37	chr8	13357027	13357027	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ccaggcttttacttatagagTcagtaacttttctctcccca	5	12	2	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	8	13357027	13357027	T	C	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	missense	c.554	p.D185G	0.042	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	183	0	0	52	20	27.78	-	-	-	C	13357027	T	C	13357027	3	2	790	1	0	0	0	0	1	0	0	0	4586	1667	58	5	4185	5	DLC1	8	13357027	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09		13357027	133006995	14	67801										
TUBAL3	0	genome.wustl.edu	37	chr10	5435789	5435789	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	acaaactgaacagagtgcctCgacttcgtggctgcgattgc	11	11	0	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	5435789	5435789	C	T	SNP	TUBAL3	ENST00000380419	human	ensembl	69_37n	-1	known	silent	c.1032	p.S344	0.660	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462	88	0	0	49	16	24.62	-	-	-	T	5435789	C	T	5435789	2	4	790	1	0	0	0	0	0	0	0	1	16848	871	31	1		1	TUBAL3	10	5435789	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		5435789	130098958	15	67802										
MYO3A	0	genome.wustl.edu	37	chr10	26463156	26463156	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ccgatatgcagccaggaggaAggcagaggccgtctgaggca	16	10	1	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	26463156	26463156	A	G	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	1	known	silent	c.3963	p.E1321	0.003	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	223	0	0	141	52	26.94	-	-	-	G	26463156	A	G	26463156	2	3	790	1	0	0	0	0	0	0	0	1	10148	69	3	5		5	MYO3A	10	26463156	Silent	SNP	A	TCGA-E2-A1B0-01A-11D-A12Q-09	21027367	26463156	109071591	16	67803										
ATE1	0	genome.wustl.edu	37	chr10	123687371	123687372	+	Frame_Shift_Ins	INS	-	-	G													0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	cgctcaccattggagcggctINSgcccgactcgttcttgcagt							TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	123687371	123687372	-	G	INS	ATE1	ENST00000224652	human	ensembl	69_37n	-1	known	frame_shift_ins	c.94_93	p.S31fs	1.000:1.000	pfam_Arg_tRNA_PTrfase_N,pirsf_Arg-tRNA-P_Trfase_1_euk	pfam_Arg-tRNA-P_Trfase_C,pfam_Arg_tRNA_PTrfase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Arg-tRNA-P_Trfase_1_euk	-	no_errors	ATE1	HGNC	ENSG00000107669	9	0	0	4	2	33.33	-	-	-	G	123687372	-	G	123687371	7	5	790	1	0	1	1	0	0	0	0	0	1082	1580	55	0	1643	0	ATE1	10	123687371	Frame_Shift_Ins	INS	-	TCGA-E2-A1B0-01A-11D-A12Q-09	97224215	123687371	11847376	17	67804										
KDM2A	0	genome.wustl.edu	37	chr11	67020978	67020978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gtctgcagtctctgccctcaGcacctccagctgcccccttc	7	20	3	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	11	67020978	67020978	G	A	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.2987	p.S996N	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	107	0	0	75	19	20.21	-	-	-	A	67020978	G	A	67020978	3	1	790	1	0	0	0	0	1	0	0	0	8178	971	34	4	3057	4	KDM2A	11	67020978	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		67020978	67985538	18	67805										
PANX1	0	genome.wustl.edu	37	chr11	93913090	93913090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tttatgtcctgctggctcccGtggttgtctacacgctgttt	10	11	1	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	11	93913090	93913090	G	T	SNP	PANX1	ENST00000227638	human	ensembl	69_37n	1	known	missense	c.868	p.V290L	0.001	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218	281	0	0	213	53	19.92	-	-	-	T	93913090	G	T	93913090	3	4	790	1	0	0	0	0	1	0	0	0	11493	1145	40	3	882	3	PANX1	11	93913090	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	26892112	93913090	41093426	19	67806										
LRP1	0	genome.wustl.edu	37	chr12	57602874	57602874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ctctctccccaggcctggccGtggattatcacaatgagcgg	11	14	2	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	12	57602874	57602874	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.12154	p.V4052M	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	41	0	0	29	5	14.71	-	-	-	A	57602874	G	A	57602874	3	1	790	1	0	0	0	0	1	0	0	0	9017	1145	40	1	12468	1	LRP1	12	57602874	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		57602874	76249021	20	67807										
DCLK1	0	genome.wustl.edu	37	chr13	36700097	36700097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	atctccgtttcgatagaaacGaactttcttggccttcttct	6	11	4	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	13	36700097	36700097	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	missense	c.178	p.R60C	1.000	superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	77	0	0	44	11	20	-	-	-	A	36700097	G	A	36700097	3	1	790	1	0	0	0	0	1	0	0	0	4322	1058	37	1	2079	1	DCLK1	13	36700097	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		36700097	78469781	21	67808										
SLC7A7	0	genome.wustl.edu	37	chr14	23245482	23245482	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	acattggtcaagatatagatGatggtgacaatgggcatgga	13	4	1	4			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	14	23245482	23245482	G	A	SNP	SLC7A7	ENST00000285850	human	ensembl	69_37n	-1	known	silent	c.816	p.I272	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A7	HGNC	ENSG00000155465	197	0	0	106	19	15.2	-	-	-	A	23245482	G	A	23245482	2	1	790	1	0	0	0	0	0	0	0	1	14792	1280	45	2		2	SLC7A7	14	23245482	Silent	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		23245482	84104058	22	67809										
AK7	0	genome.wustl.edu	37	chr14	96871122	96871122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tcgagaagaccttctcatgcGcctgctggagtgtgatgtta	12	9	1	3			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	14	96871122	96871122	G	A	SNP	AK7	ENST00000267584	human	ensembl	69_37n	1	known	missense	c.323	p.R108H	0.007	NULL	pfam_Dpy-30_motif,pfam_Adenylate_kin	-	no_errors	AK7	HGNC	ENSG00000140057	159	0	0	127	15	10.56	-	-	-	A	96871122	G	A	96871122	3	1	790	1	0	0	0	0	1	0	0	0	444	1087	38	1	333	1	AK7	14	96871122	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	73625640	96871122	10478418	23	67810										
ADAL	0	genome.wustl.edu	37	chr15	43641114	43641115	+	Frame_Shift_Ins	INS	-	-	A													0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ctttctttagattccaaaccINSaaaaaaaagaaacacaaata							TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	43641114	43641115	-	A	INS	ADAL	ENST00000422466	human	ensembl	69_37n	1	known	frame_shift_ins	c.643_644	p.E218fs	0.942:0.853	pfam_A/AMP_deaminase_dom	pfam_A/AMP_deaminase_dom	-	no_errors	ADAL	HGNC	ENSG00000168803	122	0	0	103	16	13.45	-	-	-	A	43641115	-	A	43641114	7	5	790	1	0	1	1	0	0	0	0	0	233	595	21	0	673	0	ADAL	15	43641114	Frame_Shift_Ins	INS	-	TCGA-E2-A1B0-01A-11D-A12Q-09		43641114	58890278	24	67811										
MAP1A	0	genome.wustl.edu	37	chr15	43817021	43817021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	cccaattctgggagcagaagCccttcccggaggtttgagga	13	11	1	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	43817021	43817021	C	T	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.3350	p.A1117V	0.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	45	0	0	22	5	18.52	-	-	-	T	43817021	C	T	43817021	3	4	790	1	0	0	0	0	1	0	0	0	9298	739	26	4	3352	4	MAP1A	15	43817021	Missense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	175907	43817021	58714371	25	67812										
IDH3A	0	genome.wustl.edu	37	chr15	78453949	78453949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tgaagaccccaatagcagccGgtcacccatctatgaattta	7	12	2	3			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	78453949	78453949	G	A	SNP	IDH3A	ENST00000299518	human	ensembl	69_37n	1	known	missense	c.316	p.G106S	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3A	HGNC	ENSG00000166411	225	0	0	144	44	23.4	-	-	-	A	78453949	G	A	78453949	3	1	790	1	0	0	0	0	1	0	0	0	7550	1116	39	1	334	1	IDH3A	15	78453949	Missense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09	34636928	78453949	24077443	26	67813										
KIAA1199	0	genome.wustl.edu	37	chr15	81221455	81221455	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	cgtggggacggaaatgatggAcaataggatctggggccctg	17	7	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	81221455	81221455	A	G	SNP	KIAA1199	ENST00000220244	human	ensembl	69_37n	1	known	missense	c.2552	p.D851G	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888	273	0	0	201	48	19.28	-	-	-	G	81221455	A	G	81221455	3	3	790	1	0	0	0	0	1	0	0	0	8265	275	10	5	2626	5	KIAA1199	15	81221455	Missense_Mutation	SNP	A	TCGA-E2-A1B0-01A-11D-A12Q-09	2767506	81221455	21309937	27	67814										
TP53	0	genome.wustl.edu	37	chr17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ttggccagttggcaaaacatCttgttgagggcaggggagta	15	6	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	7578534	7578534	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.396	p.K132N	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	125	0	0	47	49	51.04	-	-	-	G	7578534	C	G	7578534	3	3	790	1	0	0	0	0	1	0	0	0	16477	912	32	2	902	2	TP53	17	7578534	Missense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		7578534	73616676	28	67815										
TRPV2	0	genome.wustl.edu	37	chr17	16330833	16330833	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gggccacatccttatcctgcTaggggggatctacctcctcg	11	14	1	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	16330833	16330833	T	G	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	missense	c.1322	p.L441R	0.990	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	46	0	0	18	13	40.62	-	-	-	G	16330833	T	G	16330833	3	3	790	1	0	0	0	0	1	0	0	0	16692	1522	53	5	1348	5	TRPV2	17	16330833	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09	8752299	16330833	64864377	29	67816										
ACLY	0	genome.wustl.edu	37	chr17	40065254	40065254	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ccagttaccaaggggattgaTctcgaggtaggtgaagtaca	13	7	1	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	40065254	40065254	T	A	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	missense	c.604	p.I202F	1.000	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473	141	0	0	73	36	33.03	-	-	-	A	40065254	T	A	40065254	3	1	790	1	0	0	0	0	1	0	0	0	143	1435	50	5	2797	5	ACLY	17	40065254	Missense_Mutation	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09	23734421	40065254	41129956	30	67817										
TLE6	0	genome.wustl.edu	37	chr19	2987728	2987728	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	tttccattttccaggggcagGaaagcaaggcaccaggatcc	11	11	0	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	2987728	2987728	G	T	SNP	TLE6	ENST00000246112	human	ensembl	69_37n	1	known	nonsense	c.565	p.E189*	0.234	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	67	0	0	25	11	30.56	-	-	-	T	2987728	G	T	2987728	4	4	790	1	0	0	0	0	0	1	0	0	16037	1175	41	2	595	2	TLE6	19	2987728	Nonsense_Mutation	SNP	G	TCGA-E2-A1B0-01A-11D-A12Q-09		2987728	56141255	31	67818										
EMR1	0	genome.wustl.edu	37	chr19	6919734	6919734	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	gacggcttctcagatccaatCatctacactctggagaacat	7	12	4	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	6919734	6919734	C	T	SNP	EMR1	ENST00000312053	human	ensembl	69_37n	1	known	silent	c.1596	p.I532	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	156	0	0	79	23	22.55	-	-	-	T	6919734	C	T	6919734	2	4	790	1	0	0	0	0	0	0	0	1	5141	816	29	2		2	EMR1	19	6919734	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	3932006	6919734	52209249	32	67819										
ZNF577	0	genome.wustl.edu	37	chr19	52376691	52376691	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	cattcaccacatccatggggTttctctcctctttcagttct	5	14	5	0			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	52376691	52376691	T	C	SNP	ZNF577	ENST00000301399	human	ensembl	69_37n	-1	known	silent	c.552	p.K184	0.519	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	199	0	0	149	33	18.13	-	-	-	C	52376691	T	C	52376691	2	2	790	1	0	0	0	0	0	0	0	1	18105	1722	60	5		5	ZNF577	19	52376691	Silent	SNP	T	TCGA-E2-A1B0-01A-11D-A12Q-09	45456957	52376691	6752292	33	67820										
PFKL	0	genome.wustl.edu	37	chr21	45742920	45742920	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	attcacgccctgctggtggtCggtgggtttgaggtgagagc	17	8	1	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	21	45742920	45742920	C	T	SNP	PFKL	ENST00000403390	human	ensembl	69_37n	1	known	silent	c.1626	p.V542	0.985	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959	83	0	0	102	18	15	-	-	-	T	45742920	C	T	45742920	2	4	790	1	0	0	0	0	0	0	0	1	11838	871	31	1		1	PFKL	21	45742920	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		45742920	2386975	34	67821										
PIWIL3	0	genome.wustl.edu	37	chr22	25115535	25115535	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	ttgtgggcatagtggcaaggCgctggaactcggatgatgcc	16	8	0	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	22	25115535	25115535	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	silent	c.2553	p.A851	0.991	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	96	0	0	97	20	17.09	-	-	-	T	25115535	C	T	25115535	2	4	790	1	0	0	0	0	0	0	0	1	12033	755	27	1		1	PIWIL3	22	25115535	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09		25115535	26189031	35	67822										
PITPNB	0	genome.wustl.edu	37	chr22	28293118	28293118	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	acaaaaatagttttactcacCgttacaactgaggcataatg	6	8	1	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	22	28293118	28293118	C	T	SNP	PITPNB	ENST00000455418	human	ensembl	69_37n	-1	known	silent	c.303	p.T101	1.000	pfam_PI_transfer,prints_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNB	HGNC	ENSG00000180957	269	0	0	279	63	18.42	-	-	-	T	28293118	C	T	28293118	2	4	790	1	0	0	0	0	0	0	0	1	12022	666	23	1		1	PITPNB	22	28293118	Silent	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	3177583	28293118	23011448	36	67823										
TRAPPC2	0	genome.wustl.edu	37	chrX	13734634	13734634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	aactttagttagttacctttActaagaaggtaaggatatgc	8	5	0	1			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	X	13734634	13734634	A	G	SNP	TRAPPC2	ENST00000453655	human	ensembl	69_37n	-1	known	missense	c.257	p.V86A	0.001	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2	HGNC	ENSG00000196459	190	0	0	144	29	16.76	-	-	-	G	13734634	A	G	13734634	3	3	790	1	0	0	0	0	1	0	0	0	16554	406	14	5		5	TRAPPC2	23	13734634	Missense_Mutation	SNP	A	TCGA-E2-A1B0-01A-11D-A12Q-09		13734634	141535926	37	67824										
PAK3	0	genome.wustl.edu	37	chrX	110366476	110366476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	4	0.687646454124763	1.33333333333333	3.5	1.10526315789474	0.485714285714286	1	0	agaataagaaagccaggcttCgctctatcttcccaggagga	10	10	2	2			TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	X	110366476	110366476	C	T	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	1	known	missense	c.145	p.R49C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	322	0	0	191	53	21.72	-	-	-	T	110366476	C	T	110366476	3	4	790	1	0	0	0	0	1	0	0	0	11475	884	31	1	147	1	PAK3	23	110366476	Missense_Mutation	SNP	C	TCGA-E2-A1B0-01A-11D-A12Q-09	96631842	110366476	44904084	38	67825										
CHI3L1	0	genome.wustl.edu	37	chr1	203154335	203154335	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	ttcttgagtgtgttgagcatGccgtagagcgtcacatcatt	11	8	3	3			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	1	203154335	203154335	G	C	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	silent	c.234	p.G78	0.016	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	82	0	0	89	37	29.37	-	-	-	C	203154335	G	C	203154335	2	2	791	1	0	0	0	0	0	0	0	1	3369	1306	46	4		4	CHI3L1	1	203154335	Silent	SNP	G	TCGA-E2-A1B1-01A-21D-A12Q-09		203154335	46096286	1	67826										
TRIP12	0	genome.wustl.edu	37	chr2	230643194	230643194	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	gccattaattttcctaagaaGcgaaacttcatcttaacctt	4	10	2	1			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	2	230643194	230643194	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	silent	c.5094	p.R1698	0.997	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	220	0	0	176	30	14.56	-	-	-	A	230643194	G	A	230643194	2	1	791	1	0	0	0	0	0	0	0	1	16652	958	34	4		4	TRIP12	2	230643194	Silent	SNP	G	TCGA-E2-A1B1-01A-21D-A12Q-09		230643194	12556179	2	67827										
MUC20	0	genome.wustl.edu	37	chr3	195345561	195345561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	acacagaagtgcccgctatgActctagcaccgggccacgcc	10	16	1	2			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	3	195345561	195345561	A	G	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	1	known	missense	c.34	p.T12A	0.007	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	8	0	0	1	4	80	-	-	-	G	195345561	A	G	195345561	3	3	791	1	0	0	0	0	1	0	0	0	10048	290	10	5		5	MUC20	3	195345561	Missense_Mutation	SNP	A	TCGA-E2-A1B1-01A-21D-A12Q-09		195345561	2676869	3	67828										
PTPN13	0	genome.wustl.edu	37	chr4	87728895	87728895	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	cagtgatagccatgatgactCaagaagtagaaggagaaaaa	11	5	1	6			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	4	87728895	87728895	C	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.6943	p.Q2315E	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	147	0	0	120	15	11.11	-	-	-	G	87728895	C	G	87728895	3	3	791	1	0	0	0	0	1	0	0	0	12863	827	29	2	7117	2	PTPN13	4	87728895	Missense_Mutation	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		87728895	103425381	4	67829										
PHIP	0	genome.wustl.edu	37	chr6	79665349	79665351	+	In_Frame_Del	DEL	TTC	TTC	-													0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	cctcagaatcagacaaaactTtcttcttcattgaattataa							TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	6	79665349	79665351	TTC	-	DEL	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	in_frame_del	c.3833_3831	p.K1278in_frame_del	1.000:1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	171	0	0	75	11	12.64	-	-	-	-	79665351	TTC	-	79665349	7	5	791	1	0	1	0	1	0	0	0	0	11916	1841	64	0	1664	0	PHIP	6	79665349	In_Frame_Del	DEL	TTC	TCGA-E2-A1B1-01A-21D-A12Q-09		79665349	91449718	5	67830										
TRIM74	0	genome.wustl.edu	37	chr7	72436307	72436307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	caccttcatgcggctgcagaCggtggagacgggcgtgaccg	16	12	1	3			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	7	72436307	72436307	C	T	SNP	TRIM74	ENST00000285805	human	ensembl	69_37n	-1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM74	HGNC	ENSG00000155428	11	0	0	9	4	30.77	-	-	-	T	72436307	C	T	72436307	3	4	791	1	0	0	0	0	1	0	0	0	16643	551	19	1		1	TRIM74	7	72436307	Missense_Mutation	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		72436307	86702356	6	67831										
PNLIP	0	genome.wustl.edu	37	chr10	118318677	118318677	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	tttcactagaacaagtgtttCccttgtccaagtggaggctg	10	9	1	1			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	10	118318677	118318677	C	T	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	silent	c.942	p.F314	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	230	0	0	131	29	18.12	-	-	-	T	118318677	C	T	118318677	2	4	791	1	0	0	0	0	0	0	0	1	12223	854	30	2		2	PNLIP	10	118318677	Silent	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		118318677	17216070	7	67832										
FAT3	0	genome.wustl.edu	37	chr11	92533820	92533820	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	aaggatcgattcctcatagaCagcaatgggcaggtcatcac	10	10	3	1			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	11	92533820	92533820	C	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.7641	p.D2547E	0.576	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	109	0	0	96	35	26.72	-	-	-	G	92533820	C	G	92533820	3	3	791	1	0	0	0	0	1	0	0	0	5737	477	17	4	7675	4	FAT3	11	92533820	Missense_Mutation	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		92533820	42472696	8	67833										
ATP2B1	0	genome.wustl.edu	37	chr12	90018057	90018057	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	caataatgaagaacttcacaAagtattgtatataaattggt	6	4	1	2			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	12	90018057	90018057	A	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.1247	p.F416C	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	122	0	0	89	14	13.59	-	-	-	C	90018057	A	C	90018057	3	2	791	1	0	0	0	0	1	0	0	0	1143	14	1	5	2625	5	ATP2B1	12	90018057	Missense_Mutation	SNP	A	TCGA-E2-A1B1-01A-21D-A12Q-09		90018057	43833838	9	67834										
UGGT2	0	genome.wustl.edu	37	chr13	96555315	96555315	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	cgactatgaacacttgttttCtgcaaacatatttatagatt	5	7	1	2			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	13	96555315	96555315	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	splice_site	c.2296-1	e21-1	1.000	-	-	-	no_errors	UGGT2	HGNC	ENSG00000102595	87	0	0	57	19	24.68	-	-	-	T	96555315	C	T	96555315	5	4	791	1	0	0	0	0	0	0	1	0	17039	927	32	2	2331	2	UGGT2	13	96555315	Splice_Site	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		96555315	18614563	10	67835										
NEDD4	0	genome.wustl.edu	37	chr15	56141078	56141078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	ggctggaattttcaatcttgGatcttccttttttggtagag	10	6	3	1			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	15	56141078	56141078	G	A	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	missense	c.2611	p.P871S	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	327	0	0	246	53	17.67	-	-	-	A	56141078	G	A	56141078	3	1	791	1	0	0	0	0	1	0	0	0	10382	1174	41	2	1408	2	NEDD4	15	56141078	Missense_Mutation	SNP	G	TCGA-E2-A1B1-01A-21D-A12Q-09		56141078	46390314	11	67836										
CDH11	0	genome.wustl.edu	37	chr16	65016151	65016151	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	aacttcgggtcgatgtgcacGttggctgcctctaccttcaa	10	12	2	0			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	16	65016151	65016151	G	A	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	silent	c.1053	p.N351	0.962	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	112	0	0	108	16	12.9	-	-	-	A	65016151	G	A	65016151	2	1	791	1	0	0	0	0	0	0	0	1	3126	1136	40	1		1	CDH11	16	65016151	Silent	SNP	G	TCGA-E2-A1B1-01A-21D-A12Q-09		65016151	25338602	12	67837										
HLF	0	genome.wustl.edu	37	chr17	53345424	53345424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	tggcatcccatctccgaactGtatgcagagccccatcagac	8	15	2	2			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	17	53345424	53345424	G	A	SNP	HLF	ENST00000226067	human	ensembl	69_37n	1	known	missense	c.428	p.C143Y	1.000	NULL	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	58	0	0	33	52	61.18	-	-	-	A	53345424	G	A	53345424	3	1	791	1	0	0	0	0	1	0	0	0	7265	1377	48	4	434	4	HLF	17	53345424	Missense_Mutation	SNP	G	TCGA-E2-A1B1-01A-21D-A12Q-09		53345424	27849786	13	67838										
ZCCHC12	0	genome.wustl.edu	37	chrX	117959237	117959237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	2	0.910671484756877	0.963249516441006	1.32446808510638	0.756838905775076	1	1	0	atcattgcacgtgtcggtaaCagccggcggctgaatgcacc	12	12	1	1			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	X	117959237	117959237	C	G	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	1	known	missense	c.30	p.N10K	0.081	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	84	0	0	56	10	15.15	-	-	-	G	117959237	C	G	117959237	3	3	791	1	0	0	0	0	1	0	0	0	17677	477	17	4	32	4	ZCCHC12	23	117959237	Missense_Mutation	SNP	C	TCGA-E2-A1B1-01A-21D-A12Q-09		117959237	37311323	14	67839										
NPHP4	0	genome.wustl.edu	37	chr1	5964847	5964847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tctttggccatgatgttcctCggcagtcctgggccactctg	11	13	2	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	5964847	5964847	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1973	p.R658Q	0.001	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	108	0	0	47	30	37.97	-	-	-	T	5964847	C	T	5964847	3	4	792	1	0	0	0	0	1	0	0	0	10653	884	31	1	2367	1	NPHP4	1	5964847	Missense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09		5964847	243285774	1	67840										
SDHB	0	genome.wustl.edu	37	chr1	17355201	17355201	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	aagctagagtgttgcctccaTtgatgttcattgcacaagag	10	8	1	3			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	17355201	17355201	T	C	SNP	SDHB	ENST00000375499	human	ensembl	69_37n	-1	known	missense	c.317	p.N106S	0.998	superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	superfamily_Helical_ferredxn,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	-	no_errors	SDHB	HGNC	ENSG00000117118	341	0	0	200	106	34.53	-	-	-	C	17355201	T	C	17355201	3	2	792	1	0	0	0	0	1	0	0	0	14053	1493	52	5	545	5	SDHB	1	17355201	Missense_Mutation	SNP	T	TCGA-E2-A1B4-01A-11D-A12Q-09	11390354	17355201	231895420	2	67841										
SPATA1	0	genome.wustl.edu	37	chr1	85018792	85018792	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	aaaaaaaaaataatacatctCtacaatctcaattaggtatg	3	6	2	0			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	85018792	85018792	C	T	SNP	SPATA1	ENST00000460286	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.616	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	26	0	0	42	25	37.31	-	-	-	T	85018792	C	T	85018792	1	4	792	0	1	0	0	0	0	0	0	0	15089	900	32	2		2	SPATA1	1	85018792	RNA	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	67663591	85018792	164231829	3	67842										
PCNXL2	0	genome.wustl.edu	37	chr1	233136233	233136233	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ctcgaaggactggatggcctCgtagaggactgctgggtctt	15	9	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	233136233	233136233	C	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	nonsense	c.5146	p.E1716*	1.000	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	143	0	0	65	36	35.64	-	-	-	A	233136233	C	A	233136233	4	1	792	1	0	0	0	0	0	1	0	0	11665	893	31	3	1287	3	PCNXL2	1	233136233	Nonsense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	148117441	233136233	16114388	4	67843										
USP34	0	genome.wustl.edu	37	chr2	61492669	61492669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gacatcttcatgaggccagtAatcccatttataaggtgcat	8	9	2	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	2	61492669	61492669	A	G	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.5641	p.Y1881H	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	190	0	0	129	74	36.45	-	-	-	G	61492669	A	G	61492669	3	3	792	1	0	0	0	0	1	0	0	0	17162	362	13	5	5151	5	USP34	2	61492669	Missense_Mutation	SNP	A	TCGA-E2-A1B4-01A-11D-A12Q-09		61492669	181706704	5	67844										
KLHL30	0	genome.wustl.edu	37	chr2	239049614	239049614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gccgagagcttctctgcgcgCgtggagctgcgggacgtgga	18	11	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	2	239049614	239049614	C	T	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	1	known	silent	c.219	p.R73	0.612	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427	27	0	0	9	10	52.63	-	-	-	T	239049614	C	T	239049614	2	4	792	1	0	0	0	0	0	0	0	1	8437	755	27	1		1	KLHL30	2	239049614	Silent	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	177556945	239049614	4149759	6	67845										
DOCK3	0	genome.wustl.edu	37	chr3	51393602	51393602	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gtaccagatcgagtcaagagCttctatcgcgtcaacaatgt	9	10	3	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	51393602	51393602	C	A	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.4332	p.S1444R	1.000	pfam_DOCK	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	222	0	0	127	67	34.18	-	-	-	A	51393602	C	A	51393602	3	1	792	1	0	0	0	0	1	0	0	0	4723	796	28	4	4498	4	DOCK3	3	51393602	Missense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09		51393602	146628828	7	67846										
CD96	0	genome.wustl.edu	37	chr3	111304209	111304209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gattgtggaaaataactccaCggatgtcttggtagaggtga	13	5	1	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	111304209	111304209	C	A	SNP	CD96	ENST00000283285	human	ensembl	69_37n	1	known	missense	c.839	p.T280K	0.000	pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	278	0	0	192	117	37.86	-	-	-	A	111304209	C	A	111304209	3	1	792	1	0	0	0	0	1	0	0	0	3077	536	19	3	861	3	CD96	3	111304209	Missense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	59910607	111304209	86718221	8	67847										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	221	0	0	222	121	35.28	-	-	-	A	178936082	G	A	178936082	3	1	792	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09	67631873	178936082	19086348	9	67848										
ZNF718	0	genome.wustl.edu	37	chr4	155283	155283	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	cttttaaccaatcctcaaccCttaatttacataagagaatt	2	10	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	4	155283	155283	C	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	132	0	0	100	60	37.5	-	-	-	T	155283	C	T	155283	1	4	792	0	1	0	0	0	0	0	0	0	18216	681	24	4		4	ZNF718	4	155283	RNA	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09		155283	190998993	10	67849										
DNAH5	0	genome.wustl.edu	37	chr5	13902213	13902213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gatttgtgttttgaatctttGcaaatgtaacatccatgaac	7	6	1	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	13902213	13902213	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1679	p.A560V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	210	0	0	238	93	28.01	-	-	-	A	13902213	G	A	13902213	3	1	792	1	0	0	0	0	1	0	0	0	4640	1319	46	4	12463	4	DNAH5	5	13902213	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		13902213	167013047	11	67850										
MAP3K1	0	genome.wustl.edu	37	chr5	56178085	56178085	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gaataccttctgcatctcctCaaacacagcgcaagttttct	5	13	4	0			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	56178085	56178085	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3058	p.Q1020*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	117	0	0	64	58	47.54	-	-	-	T	56178085	C	T	56178085	4	4	792	1	0	0	0	0	0	1	0	0	9314	827	29	2	3112	2	MAP3K1	5	56178085	Nonsense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	42275872	56178085	124737175	12	67851										
MAP3K1	0	genome.wustl.edu	37	chr5	56178466	56178467	+	Frame_Shift_Ins	INS	-	-	T													0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	gccttcaagtgatacaacagINStaacttttaagtcagaagtt							TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	56178466	56178467	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3439_3440	p.T1148fs	1.000:0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	158	0	0	130	55	29.73	-	-	-	T	56178467	-	T	56178466	7	5	792	1	0	1	1	0	0	0	0	0	9314	1029	36	0	3493	0	MAP3K1	5	56178466	Frame_Shift_Ins	INS	-	TCGA-E2-A1B4-01A-11D-A12Q-09	381	56178466	124736794	13	67852										
CDHR2	0	genome.wustl.edu	37	chr5	176004515	176004515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ggtgctggtgagagtatccgCgctggtggactacgagaggc	18	8	0	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	176004515	176004515	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.1310	p.A437V	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	80	0	0	29	14	31.82	-	-	-	T	176004515	C	T	176004515	3	4	792	1	0	0	0	0	1	0	0	0	3148	768	27	1	1356	1	CDHR2	5	176004515	Missense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	119826049	176004515	4910745	14	67853										
KRBA1	0	genome.wustl.edu	37	chr7	149427674	149427674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tgcaggtgagcctggggtctCctgagggggcgcccatgcgt	18	11	1	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	7	149427674	149427674	C	T	SNP	KRBA1	ENST00000496259	human	ensembl	69_37n	1	known	missense	c.1849	p.P617S	0.005	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KRBA1	HGNC	ENSG00000133619	17	0	0	7	7	50	-	-	-	T	149427674	C	T	149427674	3	4	792	1	0	0	0	0	1	0	0	0	8492	870	30	2		2	KRBA1	7	149427674	Missense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09		149427674	9710989	15	67854										
SMARCA2	0	genome.wustl.edu	37	chr9	2088587	2088587	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tactaaggagactgaagaaaGaagttgaatcccagcttccc	9	9	0	5			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	2088587	2088587	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.2857	p.E953K	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	173	0	0	48	131	73.18	-	-	-	A	2088587	G	A	2088587	3	1	792	1	0	0	0	0	1	0	0	0	14858	943	33	2	2927	2	SMARCA2	9	2088587	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		2088587	139124844	16	67855										
RGS3	0	genome.wustl.edu	37	chr9	116346360	116346360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	aagaggccgaggaggtggagGagggggaggaaggggaggag	26	2	0	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	116346360	116346360	G	A	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	missense	c.2668	p.E890K	0.806	NULL	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	161	0	0	50	38	43.18	-	-	-	A	116346360	G	A	116346360	3	1	792	1	0	0	0	0	1	0	0	0	13390	1175	41	2	2999	2	RGS3	9	116346360	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09	114257773	116346360	24867071	17	67856										
OLFML2A	0	genome.wustl.edu	37	chr9	127563854	127563854	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ttcctccagcccacagccaaGccccgcgccctggcccagca	8	22	0	0			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	127563854	127563854	G	T	SNP	OLFML2A	ENST00000373580	human	ensembl	69_37n	1	known	missense	c.831	p.K277N	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	64	0	0	34	17	33.33	-	-	-	T	127563854	G	T	127563854	3	4	792	1	0	0	0	0	1	0	0	0	10930	962	34	4	849	4	OLFML2A	9	127563854	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09	11217494	127563854	13649577	18	67857										
HIP1R	0	genome.wustl.edu	37	chr12	123345688	123345688	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ccggccacagacaccatggaTttctccggcctgtccctcat	8	17	2	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	12	123345688	123345688	T	G	SNP	HIP1R	ENST00000253083	human	ensembl	69_37n	1	known	missense	c.2901	p.D967E	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1R	HGNC	ENSG00000130787	43	0	0	16	12	42.86	-	-	-	G	123345688	T	G	123345688	3	3	792	1	0	0	0	0	1	0	0	0	7166	1490	52	5	3019	5	HIP1R	12	123345688	Missense_Mutation	SNP	T	TCGA-E2-A1B4-01A-11D-A12Q-09		123345688	10506207	19	67858										
ENOX1	0	genome.wustl.edu	37	chr13	43810874	43810874	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	aactgtcaacacattgatttCctataaagttaaaagccaaa	4	8	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	13	43810874	43810874	C	A	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	nonsense	c.1612	p.E538*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	316	1	0.32	238	150	38.56	-	-	-	A	43810874	C	A	43810874	4	1	792	1	0	0	0	0	0	1	0	0	5163	869	30	2	331	2	ENOX1	13	43810874	Nonsense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09		43810874	71359004	20	67859										
KATNB1	0	genome.wustl.edu	37	chr16	57786814	57786814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tcaactggggcaaggtggccGacctggccatctgcaatgac	13	12	2	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	16	57786814	57786814	G	A	SNP	KATNB1	ENST00000379661	human	ensembl	69_37n	1	known	missense	c.829	p.D277N	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854	30	0	0	3	8	66.67	-	-	-	A	57786814	G	A	57786814	3	1	792	1	0	0	0	0	1	0	0	0	8041	1058	37	1	863	1	KATNB1	16	57786814	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		57786814	32567939	21	67860										
ELAC2	0	genome.wustl.edu	37	chr17	12897055	12897055	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tcgctgaagttggggctgaaGagggggaccttggcatagcg	18	7	0	3			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	12897055	12897055	G	A	SNP	ELAC2	ENST00000584650	human	ensembl	69_37n	-1	novel	missense	c.1601	p.S534F	0.996	NULL	pfam_Beta-lactamas-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELAC2	HGNC	ENSG00000006744	148	0	0	83	36	30	-	-	-	A	12897055	G	A	12897055	3	1	792	1	0	0	0	0	1	0	0	0	5084	929	33	2	286	2	ELAC2	17	12897055	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		12897055	68298155	22	67861										
XYLT2	0	genome.wustl.edu	37	chr17	48433561	48433561	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	caagtgccagtacaagcacaTtgtggactggtgtggctgct	13	9	0	0			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	48433561	48433561	T	C	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	missense	c.1421	p.I474T	1.000	pfam_Glyco_trans_14	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	68	0	0	27	19	41.3	-	-	-	C	48433561	T	C	48433561	3	2	792	1	0	0	0	0	1	0	0	0	17561	1493	52	5	1447	5	XYLT2	17	48433561	Missense_Mutation	SNP	T	TCGA-E2-A1B4-01A-11D-A12Q-09	35536506	48433561	32761649	23	67862										
DSG1	0	genome.wustl.edu	37	chr18	28934692	28934692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ccgagtcttacaccacctctGacactctgaagccctctgtg	7	16	4	2			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	18	28934692	28934692	G	C	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	1	known	missense	c.2533	p.D845H	0.997	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	148	0	0	83	56	40.29	-	-	-	C	28934692	G	C	28934692	3	2	792	1	0	0	0	0	1	0	0	0	4811	1290	45	2	2591	2	DSG1	18	28934692	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		28934692	49142556	24	67863										
ATP8B3	0	genome.wustl.edu	37	chr19	1802548	1802548	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tcctgcagcctcggaggaggAggttgccaatgtccagggag	16	10	0	0			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	1802548	1802548	A	C	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.1001	p.L334R	0.984	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	220	0	0	113	51	30.91	-	-	-	C	1802548	A	C	1802548	3	2	792	1	0	0	0	0	1	0	0	0	1200	304	11	5	3025	5	ATP8B3	19	1802548	Missense_Mutation	SNP	A	TCGA-E2-A1B4-01A-11D-A12Q-09		1802548	57326435	25	67864										
FCHO1	0	genome.wustl.edu	37	chr19	17883272	17883272	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ccctcctgcttcagcgcttcCaagccatggaggagacacac	9	16	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	17883272	17883272	C	T	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	1	known	nonsense	c.601	p.Q201*	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	137	0	0	52	43	44.79	-	-	-	T	17883272	C	T	17883272	4	4	792	1	0	0	0	0	0	1	0	0	5833	595	21	4	627	4	FCHO1	19	17883272	Nonsense_Mutation	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	16080724	17883272	41245711	26	67865										
PNMAL2	0	genome.wustl.edu	37	chr19	46998318	46998318	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tccccagaatcctgggcctgCgtctccgaagcgggaggggt	15	13	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	46998318	46998318	C	T	SNP	PNMAL2	ENST00000377655	human	ensembl	69_37n	-1	known	silent	c.405	p.T135	0.001	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851	37	0	0	15	8	34.78	-	-	-	T	46998318	C	T	46998318	2	4	792	1	0	0	0	0	0	0	0	1	12232	755	27	1		1	PNMAL2	19	46998318	Silent	SNP	C	TCGA-E2-A1B4-01A-11D-A12Q-09	29115046	46998318	12130665	27	67866										
TPTE	0	genome.wustl.edu	37	chr21	10921971	10921971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	tttcagaggcaataaggaagGcacaaaccatagttcctgtt	9	8	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	21	10921971	10921971	G	A	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.1052	p.A351V	0.221	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	375	0	0	338	65	15.97	-	-	-	A	10921971	G	A	10921971	3	1	792	1	0	0	0	0	1	0	0	0	16526	1203	42	4	631	4	TPTE	21	10921971	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09		10921971	37207924	28	67867										
ADAMTS5	0	genome.wustl.edu	37	chr21	28305265	28305265	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	ccgttgtttctgggagcaggGttattacagtgacgataggc	14	7	1	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	21	28305265	28305265	G	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1788	p.N596K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	182	0	0	100	54	35.06	-	-	-	T	28305265	G	T	28305265	3	4	792	1	0	0	0	0	1	0	0	0	269	1252	44	4	1020	4	ADAMTS5	21	28305265	Missense_Mutation	SNP	G	TCGA-E2-A1B4-01A-11D-A12Q-09	17383294	28305265	19824630	29	67868										
TMSB15A	0	genome.wustl.edu	37	chrX	101769050	101769050	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	acactctttctcttgctggaTagctgggaagacaaacacaa	8	10	2	1			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	X	101769050	101769050	T	G	SNP	TMSB15A	ENST00000289373	human	ensembl	69_37n	-1	known	missense	c.103	p.I35L	0.948	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	-	no_errors	TMSB15A	HGNC	ENSG00000158164	509	0	0	356	191	34.92	-	-	-	G	101769050	T	G	101769050	3	3	792	1	0	0	0	0	1	0	0	0	16350	1406	49	5	38	5	TMSB15A	23	101769050	Missense_Mutation	SNP	T	TCGA-E2-A1B4-01A-11D-A12Q-09		101769050	53501510	30	67869										
STAG2	0	genome.wustl.edu	37	chrX	123211834	123211834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.193548387096774	6	0.0869499021103514	2.6159169550173	7.41176470588235	2.31617647058824	0.0800865800865801	0.5224358974359	0	atgactatggagatatcatcAaagaaacaatgagtaaaaca	7	5	2	4			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	X	123211834	123211834	A	G	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.2701	p.K901E	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	341	0	0	262	136	34.17	-	-	-	G	123211834	A	G	123211834	3	3	792	1	0	0	0	0	1	0	0	0	15334	131	5	5	2799	5	STAG2	23	123211834	Missense_Mutation	SNP	A	TCGA-E2-A1B4-01A-11D-A12Q-09	21442784	123211834	32058726	31	67870										
HRNR	0	genome.wustl.edu	37	chr1	152186038	152186038	+	Frame_Shift_Del	DEL	A	A	-													0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	tgaccaaagacagaagagtgAcccaagcgagactcatatgg							TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	1	152186038	152186038	A	-	DEL	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_del	c.8067	p.H2690fs	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	10	0	0	6	6	42.86	-	-	-	-	152186038	A	-	152186038	7	5	793	1	0	1	0	1	0	0	0	0	7410	262	10	0	489	0	HRNR	1	152186038	Frame_Shift_Del	DEL	A	TCGA-E2-A1B5-01A-21D-A12Q-09		152186038	97064583	1	67871	486	3								
HRNR	0	genome.wustl.edu	37	chr1	152186041	152186042	+	Frame_Shift_Ins	INS	-	-	GG													0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	caaagacagaagagtgacccINSaagcgagactcatatgggcc							TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	1	152186041	152186042	-	GG	INS	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8064_8063	p.L2688fs	0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0	6	6	50	-	-	-	GG	152186042	-	GG	152186041	7	5	793	1	0	1	1	0	0	0	0	0	7410	593	21	0	492	0	HRNR	1	152186041	Frame_Shift_Ins	INS	-	TCGA-E2-A1B5-01A-21D-A12Q-09	3	152186041	97064580	2	67872	486	3								
HRNR	0	genome.wustl.edu	37	chr1	152186047	152186047	+	Frame_Shift_Del	DEL	A	A	-													0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	acagaagagtgacccaagcgAgactcatatgggccacggct							TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	1	152186047	152186047	A	-	DEL	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_del	c.8058	p.R2687fs	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0	5	6	54.55	-	-	-	-	152186047	A	-	152186047	7	5	793	1	0	1	0	1	0	0	0	0	7410	291	11	0	498	0	HRNR	1	152186047	Frame_Shift_Del	DEL	A	TCGA-E2-A1B5-01A-21D-A12Q-09	6	152186047	97064574	3	67873	486	3								
PCDHA3	0	genome.wustl.edu	37	chr5	140181539	140181539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	tctataaagtcagattactcGaaaatgcaccaaatggtacc	6	9	2	1			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	5	140181539	140181539	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	76	0	0	51	14	21.54	-	-	-	A	140181539	G	A	140181539	3	1	793	1	0	0	0	0	1	0	0	0	11598	1059	37	1	759	1	PCDHA3	5	140181539	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09		140181539	40733721	4	67874										
PDGFRB	0	genome.wustl.edu	37	chr5	149510110	149510110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	aggtctgctcaccttttgagGtctctgcaggcagaccagat	11	11	3	3			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	5	149510110	149510110	G	T	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.1359	p.D453E	0.996	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	54	0	0	43	10	18.87	-	-	-	T	149510110	G	T	149510110	3	4	793	1	0	0	0	0	1	0	0	0	11735	1252	44	4	2021	4	PDGFRB	5	149510110	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09	9328571	149510110	31405150	5	67875										
LPA	0	genome.wustl.edu	37	chr6	161071469	161071469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	cagtggtggagtacgtgcctCgataactctgtccatcacca	10	12	2	0			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	6	161071469	161071469	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.110	p.R37Q	0.280	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	224	1	0.44	349	47	11.87	-	-	-	T	161071469	C	T	161071469	3	4	793	1	0	0	0	0	1	0	0	0	8969	884	31	1	6164	1	LPA	6	161071469	Missense_Mutation	SNP	C	TCGA-E2-A1B5-01A-21D-A12Q-09		161071469	10043598	6	67876										
GATA3	0	genome.wustl.edu	37	chr10	8115965	8115966	+	Frame_Shift_Ins	INS	-	-	A													0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	gaccacaccacccctccagcINSatggtcaccgccatgggtta							TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	10	8115965	8115966	-	A	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1314_1315	p.M438fs	0.485:0.999	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	60	0	0	103	15	12.71	-	-	-	A	8115966	-	A	8115965	7	5	793	1	0	1	1	0	0	0	0	0	6305	709	25	0	1332	0	GATA3	10	8115965	Frame_Shift_Ins	INS	-	TCGA-E2-A1B5-01A-21D-A12Q-09		8115965	127418782	7	67877										
PANX1	0	genome.wustl.edu	37	chr11	93886744	93886746	+	In_Frame_Del	DEL	AGA	AGA	-													0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	ttgctgggcggctgttcagcAgaagaactcactgcagagcg							TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	11	93886744	93886746	AGA	-	DEL	PANX1	ENST00000227638	human	ensembl	69_37n	1	known	in_frame_del	c.269_271	p.K91in_frame_del	1.000:1.000:0.997	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218	122	0	0	250	47	15.82	-	-	-	-	93886746	AGA	-	93886744	7	5	793	1	0	1	0	1	0	0	0	0	11493	188	7	0	275	0	PANX1	11	93886744	In_Frame_Del	DEL	AGA	TCGA-E2-A1B5-01A-21D-A12Q-09		93886744	41119772	8	67878										
BRIP1	0	genome.wustl.edu	37	chr17	59821812	59821812	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	cctttctctcctttgtatttGattgcgtcatagtacacctg	6	11	2	1			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	17	59821812	59821812	G	A	SNP	BRIP1	ENST00000584322	human	ensembl	69_37n	-1	putative	missense	c.221	p.S74L	1.000	smart_ATP-dep_Helicase_C	smart_ATP-dep_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRIP1	HGNC	ENSG00000136492	347	2	0.57	459	214	31.75	-	-	-	A	59821812	G	A	59821812	3	1	793	1	0	0	0	0	1	0	0	0	1522	1280	45	2	1535	2	BRIP1	17	59821812	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09		59821812	21373398	9	67879			1	112		2	2	90	G		3.7374e-05
BRIP1	0	genome.wustl.edu	37	chr17	59821901	59821901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	gactgtcttcaccaactccaGattatgccataaaccagtag	6	12	2	1			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	17	59821901	59821901	G	C	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.2149	p.L717V	1.000	smart_ATP-dep_Helicase_C,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	279	1	0.36	338	161	32.26	-	-	-	C	59821901	G	C	59821901	3	2	793	1	0	0	0	0	1	0	0	0	1522	933	33	2	1624	2	BRIP1	17	59821901	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09	89	59821901	21373309	10	67880			1	112		2	2	90	G		3.7374e-05
ADNP2	0	genome.wustl.edu	37	chr18	77895774	77895774	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	tttccccaccttgatttcatCaccatattgccaaaggagaa	5	12	2	2			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	18	77895774	77895774	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	silent	c.2478	p.I826	0.273	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	58	0	0	55	9	14.06	-	-	-	T	77895774	C	T	77895774	2	4	793	1	0	0	0	0	0	0	0	1	324	816	29	2		2	ADNP2	18	77895774	Silent	SNP	C	TCGA-E2-A1B5-01A-21D-A12Q-09		77895774	181474	11	67881										
PCSK4	0	genome.wustl.edu	37	chr19	1482992	1482992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	gacatgaagacccagttgttGtagccttcagtgctgacgtc	11	10	1	3			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	19	1482992	1482992	G	A	SNP	PCSK4	ENST00000300954	human	ensembl	69_37n	-1	known	silent	c.1599	p.Y533	0.999	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257	30	0	0	31	6	16.22	-	-	-	A	1482992	G	A	1482992	2	1	793	1	0	0	0	0	0	0	0	1	11675	1372	48	4		4	PCSK4	19	1482992	Silent	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09		1482992	57645991	12	67882										
GRIN2D	0	genome.wustl.edu	37	chr19	48945466	48945466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	tctgccacaatgacaaaatcGaggtgatgagcagcaagctg	11	9	1	3			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	19	48945466	48945466	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	1	known	missense	c.2500	p.E834K	1.000	pfam_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	69	0	0	113	16	12.31	-	-	-	A	48945466	G	A	48945466	3	1	793	1	0	0	0	0	1	0	0	0	6833	1059	37	1	2542	1	GRIN2D	19	48945466	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09	47462474	48945466	10183517	13	67883										
FTL	0	genome.wustl.edu	37	chr19	49469846	49469846	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	ctcttctctctcagctctgtGacttcctggagactcacttc	6	15	5	2			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	19	49469846	49469846	G	A	SNP	FTL	ENST00000331825	human	ensembl	69_37n	1	known	missense	c.382	p.D128N	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTL	HGNC	ENSG00000087086	198	0	0	198	23	10.41	-	-	-	A	49469846	G	A	49469846	3	1	793	1	0	0	0	0	1	0	0	0	6133	1290	45	2	396	2	FTL	19	49469846	Missense_Mutation	SNP	G	TCGA-E2-A1B5-01A-21D-A12Q-09	524380	49469846	9659137	14	67884										
PRR12	0	genome.wustl.edu	37	chr19	50128449	50128449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.307692307692308	4	0.234718851934338	2.42642642642643	5.45945945945946	2.0472972972973	0.485714285714286	1	0	accacaccttcctgcgctgcCgggaccaggtgagccccacc	10	19	0	1			TCGA-E2-A1B5-01A-21D-A12Q-09	TCGA-E2-A1B5-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58660f5f-2196-4a1f-a102-f173b9ce629b	aab6dd17-aa36-42fa-a54e-59c68c8922e7	19	50128449	50128449	C	T	SNP	PRR12	ENST00000418929	human	ensembl	69_37n	1	known	missense	c.5956	p.R1986W	0.997	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	176	0	0	236	30	11.24	-	-	-	T	50128449	C	T	50128449	3	4	793	1	0	0	0	0	1	0	0	0	12665	643	23	1	6006	1	PRR12	19	50128449	Missense_Mutation	SNP	C	TCGA-E2-A1B5-01A-21D-A12Q-09	658603	50128449	9000534	15	67885										
DHCR24	0	genome.wustl.edu	37	chr1	55331007	55331007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaagatgctgcgcgtgtggCggtggtagtagtgtctcaag	17	6	1	2			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	1	55331007	55331007	C	T	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.989	p.R330H	1.000	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	214	0	0	190	22	10.33	-	-	-	T	55331007	C	T	55331007	3	4	794	1	0	0	0	0	1	0	0	0	4512	768	27	1	577	1	DHCR24	1	55331007	Missense_Mutation	SNP	C	TCGA-E2-A1B6-01A-31D-A12Q-09		55331007	193919614	1	67886										
CASP8	0	genome.wustl.edu	37	chr2	202149683	202149683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cttcatctgctgtatcctctCccatggagacaagggcatca	8	13	4	1			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	2	202149683	202149683	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.1124	p.S375F	0.897	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	159	0	0	112	16	12.4	-	-	-	T	202149683	C	T	202149683	3	4	794	1	0	0	0	0	1	0	0	0	2702	855	30	2	1254	2	CASP8	2	202149683	Missense_Mutation	SNP	C	TCGA-E2-A1B6-01A-31D-A12Q-09		202149683	41049690	2	67887										
C6orf118	0	genome.wustl.edu	37	chr6	165715615	165715615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggctggtagagcttgttggGgttcaggtgtccagagatgt	17	5	1	2			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	6	165715615	165715615	G	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.196	p.P66T	0.953	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	144	0	0	109	15	12.1	-	-	-	T	165715615	G	T	165715615	3	4	794	1	0	0	0	0	1	0	0	0	2344	1232	43	4	1245	4	C6orf118	6	165715615	Missense_Mutation	SNP	G	TCGA-E2-A1B6-01A-31D-A12Q-09		165715615	5399452	3	67888										
ZNF618	0	genome.wustl.edu	37	chr9	116811102	116811102	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agacagtggtgcccgctatgGggccttctcggtcactgaaa	13	11	2	2			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	9	116811102	116811102	G	T	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	1	known	missense	c.1520	p.G507V	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	56	0	0	48	7	12.73	-	-	-	T	116811102	G	T	116811102	3	4	794	1	0	0	0	0	1	0	0	0	18138	1232	43	4	1295	4	ZNF618	9	116811102	Missense_Mutation	SNP	G	TCGA-E2-A1B6-01A-31D-A12Q-09		116811102	24402329	4	67889										
CHD4	0	genome.wustl.edu	37	chr12	6690307	6690307	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggttcaacaacgaccttttcAtcctctgaggcaggggcagg	12	11	3	1			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	12	6690307	6690307	A	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.4896	p.D1632	0.677	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	340	0	0	356	55	13.38	-	-	-	G	6690307	A	G	6690307	2	3	794	1	0	0	0	0	0	0	0	1	3356	214	8	5		5	CHD4	12	6690307	Silent	SNP	A	TCGA-E2-A1B6-01A-31D-A12Q-09		6690307	127161588	5	67890										
LINGO1	0	genome.wustl.edu	37	chr15	77907402	77907402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagatagactaggtggcggaCggccaggtagggcacagcgg	19	8	0	2			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	15	77907402	77907402	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.847	p.V283I	0.996	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	163	1	0.61	129	37	22.16	-	-	-	T	77907402	C	T	77907402	3	4	794	1	0	0	0	0	1	0	0	0	8870	536	19	1	1019	1	LINGO1	15	77907402	Missense_Mutation	SNP	C	TCGA-E2-A1B6-01A-31D-A12Q-09		77907402	24623990	6	67891										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	50	0	0	43	6	12.24	-	-	-	A	7574003	G	A	7574003	4	1	794	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-E2-A1B6-01A-31D-A12Q-09		7574003	73621207	7	67892										
PDE4A	0	genome.wustl.edu	37	chr19	10570300	10570300	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgctgaagaaattccgcatCcctgtggacacgatggtgac	11	11	0	3			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	19	10570300	10570300	C	G	SNP	PDE4A	ENST00000352831	human	ensembl	69_37n	1	known	missense	c.1230	p.I410M	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989	30	0	0	21	4	16	-	-	-	G	10570300	C	G	10570300	3	3	794	1	0	0	0	0	1	0	0	0	11712	845	30	2	1725	2	PDE4A	19	10570300	Missense_Mutation	SNP	C	TCGA-E2-A1B6-01A-31D-A12Q-09		10570300	48558683	8	67893										
PHF21B	0	genome.wustl.edu	37	chr22	45279150	45279150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgactgggtgcccctctggCgggccagcaggcttgtcttc	14	13	2	1			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	22	45279150	45279150	C	T	SNP	PHF21B	ENST00000313237	human	ensembl	69_37n	-1	known	missense	c.1412	p.R471H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	37	0	0	32	5	13.51	-	-	-	T	45279150	C	T	45279150	3	4	794	1	0	0	0	0	1	0	0	0	11908	768	27	1	187	1	PHF21B	22	45279150	Missense_Mutation	SNP	C	TCGA-E2-A1B6-01A-31D-A12Q-09		45279150	6025416	9	67894										
DDAH1	0	genome.wustl.edu	37	chr1	85790543	85790543	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	acagtgagtttgtcgtagcgGtggtcactcatctgttgcat	12	8	3	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	1	85790543	85790543	G	T	SNP	DDAH1	ENST00000284031	human	ensembl	69_37n	-1	known	missense	c.621	p.H207Q	0.999	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904	258	0	0	191	93	32.75	-	-	-	T	85790543	G	T	85790543	3	4	795	1	0	0	0	0	1	0	0	0	4352	1252	44	4	244	4	DDAH1	1	85790543	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09		85790543	163460078	1	67895										
FAM72D	0	genome.wustl.edu	37	chr1	143910091	143910091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	aaattaccattttaaacatgCgatgtccttcagtttacatt	4	8	1	0			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	1	143910091	143910091	C	T	SNP	FAM72D	ENST00000400889	human	ensembl	69_37n	-1	known	missense	c.217	p.A73T	1.000	NULL	NULL	-	no_errors	FAM72D	HGNC	ENSG00000215784	76	0	0	50	9	15.25	-	-	-	T	143910091	C	T	143910091	3	4	795	1	0	0	0	0	1	0	0	0	5661	768	27	1	244	1	FAM72D	1	143910091	Missense_Mutation	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09	58119548	143910091	105340530	2	67896										
BSN	0	genome.wustl.edu	37	chr3	49698237	49698237	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	agttgggtatcacacaacgcAaagagtctttggccaaagac	10	9	2	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	49698237	49698237	A	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	nonsense	c.8959	p.K2987*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	20	0	0	18	5	21.74	-	-	-	T	49698237	A	T	49698237	4	4	795	1	0	0	0	0	0	1	0	0	1538	131	5	5	8981	5	BSN	3	49698237	Nonsense_Mutation	SNP	A	TCGA-E2-A1BC-01A-11D-A14G-09		49698237	148324193	3	67897										
RNF123	0	genome.wustl.edu	37	chr3	49742580	49742580	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ctcggagaaagtgaaggtccGcacgctgagcgtggagcaga	16	9	0	4			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	49742580	49742580	G	C	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.2123	p.R708P	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	49	0	0	39	12	23.53	-	-	-	C	49742580	G	C	49742580	3	2	795	1	0	0	0	0	1	0	0	0	13519	1087	38	3	2209	3	RNF123	3	49742580	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	44343	49742580	148279850	4	67898										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	208	0	0	163	50	23.47	-	-	-	G	178952085	A	G	178952085	3	3	795	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1BC-01A-11D-A14G-09	129209505	178952085	19070345	5	67899										
SH3TC1	0	genome.wustl.edu	37	chr4	8228801	8228801	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	aagacctgcccaggctgcccCcaggagccagcgtcctgggg	14	16	0	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	8228801	8228801	C	G	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	silent	c.1380	p.P460	0.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	37	0	0	27	18	40	-	-	-	G	8228801	C	G	8228801	2	3	795	1	0	0	0	0	0	0	0	1	14350	610	22	4		4	SH3TC1	4	8228801	Silent	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09		8228801	182925475	6	67900										
GABRG1	0	genome.wustl.edu	37	chr4	46053637	46053637	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ttgtactcagggttgtcataGtcagaactgtagtgatacct	10	7	3	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	46053637	46053637	G	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.935	p.T312S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	247	0	0	170	41	19.43	-	-	-	C	46053637	G	C	46053637	3	2	795	1	0	0	0	0	1	0	0	0	6220	1029	36	4	470	4	GABRG1	4	46053637	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	37824836	46053637	145100639	7	67901										
FAM13A	0	genome.wustl.edu	37	chr4	89744132	89744132	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ataggaaaatactacctttgCagaggcatgatttcacaagc	8	8	1	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	89744132	89744132	C	A	SNP	FAM13A	ENST00000508369	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	1.000	NULL	NULL	-	no_errors	FAM13A	HGNC	ENSG00000138640	161	1	0.62	115	36	23.84	-	-	-	A	89744132	C	A	89744132	2	1	795	1	0	0	0	0	0	0	0	1	5492	697	25	4		4	FAM13A	4	89744132	Silent	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09	43690495	89744132	101410144	8	67902										
PCDH10	0	genome.wustl.edu	37	chr4	134084410	134084410	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	atggactgctgactaatacgCgagcgccttacaaaccacca	8	13	0	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	134084410	134084410	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	nonsense	c.3076	p.R1026*	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	43	0	0	31	10	23.81	-	-	-	T	134084410	C	T	134084410	4	4	795	1	0	0	0	0	0	1	0	0	11580	760	27	1	3150	1	PCDH10	4	134084410	Nonsense_Mutation	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09	44340278	134084410	57069866	9	67903										
EXOC3	0	genome.wustl.edu	37	chr5	447698	447698	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	cgcacaggcctcagccagctCcacaacgccctgaatgacgt	9	17	1	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	5	447698	447698	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	1	known	silent	c.195	p.L65	0.617	NULL	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	47	0	0	21	13	38.24	-	-	-	T	447698	C	T	447698	2	4	795	1	0	0	0	0	0	0	0	1	5339	842	30	2		2	EXOC3	5	447698	Silent	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09		447698	180467562	10	67904										
MED23	0	genome.wustl.edu	37	chr6	131937129	131937129	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	atctcaacaaagcagtctgtGgttcaaacagatcctttaaa							TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	6	131937129	131937129	G	-	DEL	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	frame_shift_del	c.794	p.P265fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	236	0	0	102	65	38.69	-	-	-	-	131937129	G	-	131937129	7	5	795	1	0	1	0	1	0	0	0	0	9512	1348	47	0	3421	0	MED23	6	131937129	Frame_Shift_Del	DEL	G	TCGA-E2-A1BC-01A-11D-A14G-09		131937129	39177938	11	67905										
SCARA5	0	genome.wustl.edu	37	chr8	27845103	27845103	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ctggtgtcacagtcgctgacGgtgtgtaggtacatagcttt	13	8	1	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	8	27845103	27845103	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	silent	c.30	p.T10	0.997	NULL	pfam_Srcr_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SCARA5	HGNC	ENSG00000168079	129	0	0	93	22	19.13	-	-	-	A	27845103	G	A	27845103	2	1	795	1	0	0	0	0	0	0	0	1	13967	1103	39	1		1	SCARA5	8	27845103	Silent	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09		27845103	118518919	12	67906										
MUS81	0	genome.wustl.edu	37	chr11	65632201	65632201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	tcttccccaggtcattgatgGcttttttgtgaagcgcacag	10	10	2	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	11	65632201	65632201	G	T	SNP	MUS81	ENST00000308110	human	ensembl	69_37n	1	known	missense	c.1187	p.G396V	1.000	superfamily_Restrct_endonuc-II-like	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732	121	0	0	68	30	30.61	-	-	-	T	65632201	G	T	65632201	3	4	795	1	0	0	0	0	1	0	0	0	10060	1203	42	4	1233	4	MUS81	11	65632201	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09		65632201	69374315	13	67907										
SPTBN2	0	genome.wustl.edu	37	chr11	66475053	66475053	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	accttctgcagctccaggttGaggaggagccgctcccgccg	13	15	1	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	11	66475053	66475053	G	C	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	0.873	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	16	0	0	11	4	26.67	-	-	-	C	66475053	G	C	66475053	2	2	795	1	0	0	0	0	0	0	0	1	15211	1277	45	2		2	SPTBN2	11	66475053	Silent	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	842852	66475053	68531463	14	67908										
PRB1	0	genome.wustl.edu	37	chr12	11506225	11506225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	gaggagatcgggcactttggGacttgctgcctccttgtgcg	15	10	0	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	11506225	11506225	G	A	SNP	PRB1	ENST00000500254	human	ensembl	69_37n	-1	known	missense	c.413	p.S138F	0.009	NULL	NULL	-	no_errors	PRB1	HGNC	ENSG00000251655	798	0	0	478	183	27.69	-	-	-	A	11506225	G	A	11506225	3	1	795	1	0	0	0	0	1	0	0	0	12523	1174	41	2	187	2	PRB1	12	11506225	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09		11506225	122345670	15	67909										
TM7SF3	0	genome.wustl.edu	37	chr12	27133509	27133509	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	tttcacttaccatcatacttGataggtgtcagtcttgtaat	6	8	4	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	27133509	27133509	G	C	SNP	TM7SF3	ENST00000545303	human	ensembl	69_37n	-1	putative	nonsense	c.368	p.S123*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TM7SF3	HGNC	ENSG00000064115	210	0	0	131	43	24.71	-	-	-	C	27133509	G	C	27133509	4	2	795	1	0	0	0	0	0	1	0	0	16070	1280	45	2	706	2	TM7SF3	12	27133509	Nonsense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	15627284	27133509	106718386	16	67910										
GPR133	0	genome.wustl.edu	37	chr12	131616342	131616342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ccgacaactacaagatccatGgagaccccagtgccttcaag	8	14	1	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	131616342	131616342	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	missense	c.2248	p.G750R	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	174	0	0	142	38	20.99	-	-	-	A	131616342	G	A	131616342	3	1	795	1	0	0	0	0	1	0	0	0	6693	1349	47	4	2330	4	GPR133	12	131616342	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	104482833	131616342	2235553	17	67911										
SMAD9	0	genome.wustl.edu	37	chr13	37446983	37446983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	cactgtgcagggaggcgctgCggaacttggccaggaggctg	18	10	0	0			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	13	37446983	37446983	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.482	p.R161H	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	362	1	0.28	254	87	25.36	-	-	-	T	37446983	C	T	37446983	3	4	795	1	0	0	0	0	1	0	0	0	14853	768	27	1	941	1	SMAD9	13	37446983	Missense_Mutation	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09		37446983	77722895	18	67912										
ARHGAP11A	0	genome.wustl.edu	37	chr15	32929655	32929655	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	atcaaaagattcctctgtttCatgtatcaaatcaggtccta	5	9	5	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	15	32929655	32929655	C	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	1	known	nonsense	c.2681	p.S894*	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	246	0	0	147	58	28.29	-	-	-	A	32929655	C	A	32929655	4	1	795	1	0	0	0	0	0	1	0	0	865	838	29	2	2750	2	ARHGAP11A	15	32929655	Nonsense_Mutation	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09		32929655	69601737	19	67913										
ALDH1A3	0	genome.wustl.edu	37	chr15	101447414	101447414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	caccgactatggactcacagCagccgtgttcacaaaaaatc	7	13	2	0			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	15	101447414	101447414	C	T	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	1	known	missense	c.1322	p.A441V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	251	0	0	200	66	24.81	-	-	-	T	101447414	C	T	101447414	3	4	795	1	0	0	0	0	1	0	0	0	492	710	25	4	1364	4	ALDH1A3	15	101447414	Missense_Mutation	SNP	C	TCGA-E2-A1BC-01A-11D-A14G-09	68517759	101447414	1083978	20	67914										
MAP2K4	0	genome.wustl.edu	37	chr17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-													0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	ttgcttcccaatattttaacAgagagagactgagaacacac							TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	11984671	11984672	AG	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	splice_site_del	c.252-2_252-1	e4-1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	132	0	0	65	28	30.11	-	-	-	-	11984672	AG	-	11984671	8	5	795	1	0	1	0	1	0	0	1	0	9310	202	7	0	227	0	MAP2K4	17	11984671	Splice_Site	DEL	AG	TCGA-E2-A1BC-01A-11D-A14G-09		11984671	69210539	21	67915										
NF1	0	genome.wustl.edu	37	chr17	29588873	29588876	+	Splice_Site	DEL	TAGG	TAGG	-													0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	aagtttgaggaatttatgacTaggtaaagtacaaccttgaa							TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	TAGG	TAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	29588873	29588876	TAGG	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	splice_site_del	c.4724+4_4724+1	e36-1	0.877:1.000:1.000:1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	146	0	0	82	21	20.39	-	-	-	-	29588876	TAGG	-	29588873	8	5	795	1	0	1	0	1	0	0	1	0	10428	1509	53	0	4921	0	NF1	17	29588873	Splice_Site	DEL	TAGG	TCGA-E2-A1BC-01A-11D-A14G-09	17604202	29588873	51606337	22	67916										
KIF18B	0	genome.wustl.edu	37	chr17	43009058	43009058	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	caggcgaggggactctggcaGtgcatgtgtggggttctgct	18	8	2	0			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	43009058	43009058	G	A	SNP	KIF18B	ENST00000339151	human	ensembl	69_37n	-1	known	silent	c.1465	p.L489	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185	196	0	0	148	61	29.19	-	-	-	A	43009058	G	A	43009058	2	1	795	1	0	0	0	0	0	0	0	1	8333	1020	36	4		4	KIF18B	17	43009058	Silent	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	13420185	43009058	38186152	23	67917										
USH1G	0	genome.wustl.edu	37	chr17	72916760	72916760	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	cagatgtcacacttgtccggGtcacccctgcagggaaagca	11	13	2	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	72916760	72916760	G	C	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	missense	c.171	p.D57E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	38	0	0	55	15	21.43	-	-	-	C	72916760	G	C	72916760	3	2	795	1	0	0	0	0	1	0	0	0	17132	1252	44	4	1222	4	USH1G	17	72916760	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	29907702	72916760	8278450	24	67918										
KCNJ6	0	genome.wustl.edu	37	chr21	39087022	39087022	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	atggtggtttctgtctctatTgagaataaaaaagcagagac	10	5	2	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	21	39087022	39087022	T	C	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	silent	c.438	p.S146	0.659	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	165	0	0	87	32	26.89	-	-	-	C	39087022	T	C	39087022	2	2	795	1	0	0	0	0	0	0	0	1	8109	1799	63	5		5	KCNJ6	21	39087022	Silent	SNP	T	TCGA-E2-A1BC-01A-11D-A14G-09		39087022	9042873	25	67919										
CXorf23	0	genome.wustl.edu	37	chrX	19971988	19971988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	aaacgctcatgtaaagtaatGccaggtgatggaaaataatt	9	5	1	1			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	19971988	19971988	G	T	SNP	CXorf23	ENST00000340625	human	ensembl	69_37n	-1	known	missense	c.298	p.H100N	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CXorf23	HGNC	ENSG00000173681	364	0	0	301	110	26.76	-	-	-	T	19971988	G	T	19971988	3	4	795	1	0	0	0	0	1	0	0	0	4134	1306	46	4	603	4	CXorf23	23	19971988	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09		19971988	135298572	26	67920										
BCOR	0	genome.wustl.edu	37	chrX	39922954	39922954	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	gccaggtttctcttcagtgaTgttagtcccctgaggaatgg	12	9	2	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	39922954	39922954	T	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3754	p.I1252V	0.915	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	446	0	0	318	118	27	-	-	-	C	39922954	T	C	39922954	3	2	795	1	0	0	0	0	1	0	0	0	1390	1464	51	5	1545	5	BCOR	23	39922954	Missense_Mutation	SNP	T	TCGA-E2-A1BC-01A-11D-A14G-09	19950966	39922954	115347606	27	67921										
RLIM	0	genome.wustl.edu	37	chrX	73812045	73812045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.929053217008367	0.895833333333333	2.38888888888889	0	0.4	0.991179622791967	0	cacacctgcccgctcagaacGtgaaaatgtacgcctaaaac	7	14	1	2			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	73812045	73812045	G	A	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	missense	c.1105	p.R369C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	266	2	0.75	252	35	12.2	-	-	-	A	73812045	G	A	73812045	3	1	795	1	0	0	0	0	1	0	0	0	13476	1145	40	1	773	1	RLIM	23	73812045	Missense_Mutation	SNP	G	TCGA-E2-A1BC-01A-11D-A14G-09	33889091	73812045	81458515	28	67922										
SLC45A1	0	genome.wustl.edu	37	chr1	8385359	8385359	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ctggcctgctctgtttcaggAttcctactgcagcctctgtt	9	13	3	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	1	8385359	8385359	A	G	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	1	known	silent	c.501	p.G167	0.994	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	292	1	0.34	179	50	21.83	-	-	-	G	8385359	A	G	8385359	2	3	796	1	0	0	0	0	0	0	0	1	14729	347	12	5		5	SLC45A1	1	8385359	Silent	SNP	A	TCGA-E2-A1BD-01A-11D-A12Q-09		8385359	240865262	1	67923										
RNASEL	0	genome.wustl.edu	37	chr1	182554944	182554944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	tctgaggcttccagtcttcaGcaggagggtgaaaatcttct	11	9	5	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	1	182554944	182554944	G	T	SNP	RNASEL	ENST00000367559	human	ensembl	69_37n	-1	known	missense	c.998	p.A333D	0.000	NULL	pfam_Ankyrin_rpt,pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RNASEL	HGNC	ENSG00000135828	50	0	0	63	11	14.86	-	-	-	T	182554944	G	T	182554944	3	4	796	1	0	0	0	0	1	0	0	0	13502	971	34	4	1251	4	RNASEL	1	182554944	Missense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09	174169585	182554944	66695677	2	67924										
ALK	0	genome.wustl.edu	37	chr2	29455275	29455275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gtaggccctgccaccacctcCggctgcaatgatcaggggca	12	15	1	1			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	2	29455275	29455275	C	T	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.2527	p.G843R	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	136	0	0	17	37	68.52	-	-	-	T	29455275	C	T	29455275	3	4	796	1	0	0	0	0	1	0	0	0	525	661	23	1	2395	1	ALK	2	29455275	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09		29455275	213744098	3	67925										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	197	0	0	42	60	58.82	-	-	-	G	178952085	A	G	178952085	3	3	796	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1BD-01A-11D-A12Q-09		178952085	19070345	4	67926										
GAK	0	genome.wustl.edu	37	chr4	906526	906526	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ttccaggaaaaggataccatGaagcaaacttcttgaatgat	8	7	1	3			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	4	906526	906526	G	T	SNP	GAK	ENST00000314167	human	ensembl	69_37n	-1	known	missense	c.264	p.F88L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_Kinase-like_dom,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_N,pfscan_Prot_kinase_cat_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	GAK	HGNC	ENSG00000178950	240	0	0	84	34	28.81	-	-	-	T	906526	G	T	906526	3	4	796	1	0	0	0	0	1	0	0	0	6245	1281	45	2	3775	2	GAK	4	906526	Missense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09		906526	190247750	5	67927										
MAP3K1	0	genome.wustl.edu	37	chr5	56177011	56177014	+	Frame_Shift_Del	DEL	ATAG	ATAG	-													0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ttcttggccgcctttgtcttAtagatagactgttgttggaa							TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	ATAG	ATAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	5	56177011	56177014	ATAG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2281_2284	p.R763fs	0.994:0.998:0.969:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	535	0	0	239	148	37.85	-	-	-	-	56177014	ATAG	-	56177011	7	5	796	1	0	1	0	1	0	0	0	0	9314	449	16	0	2331	0	MAP3K1	5	56177011	Frame_Shift_Del	DEL	ATAG	TCGA-E2-A1BD-01A-11D-A12Q-09		56177011	124738249	6	67928										
MAP3K1	0	genome.wustl.edu	37	chr5	56179424	56179425	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gacactgaatggctgaaaggINStcaacagataggccttggag							TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	5	56179424	56179425	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3737_3738	p.Q1247fs	1.000:0.940	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	425	0	0	173	102	37.09	-	-	-	T	56179425	-	T	56179424	7	5	796	1	0	1	1	0	0	0	0	0	9314	1261	44	0	3795	0	MAP3K1	5	56179424	Frame_Shift_Ins	INS	-	TCGA-E2-A1BD-01A-11D-A12Q-09	2413	56179424	124735836	7	67929										
MAP1B	0	genome.wustl.edu	37	chr5	71479590	71479590	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gacaaaagatccttcatcacCgaagtgacgttttagaaaca	7	9	2	3			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	5	71479590	71479590	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	nonsense	c.307	p.R103*	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	267	0	0	147	34	18.78	-	-	-	T	71479590	C	T	71479590	4	4	796	1	0	0	0	0	0	1	0	0	9299	644	23	1	317	1	MAP1B	5	71479590	Nonsense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	15300166	71479590	109435670	8	67930										
GNAI1	0	genome.wustl.edu	37	chr7	79818279	79818279	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	atttttaggtgctggtgaatCtggtaaaagtacaattgtga	11	3	1	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	7	79818279	79818279	C	T	SNP	GNAI1	ENST00000351004	human	ensembl	69_37n	1	known	missense	c.131	p.S44F	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_GproteinA	-	no_errors	GNAI1	HGNC	ENSG00000127955	567	0	0	225	229	50.44	-	-	-	T	79818279	C	T	79818279	3	4	796	1	0	0	0	0	1	0	0	0	6556	913	32	2	137	2	GNAI1	7	79818279	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09		79818279	79320384	9	67931										
PCM1	0	genome.wustl.edu	37	chr8	17838141	17838141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ctagcacatgtgaaccttgcAaaagtaggaacagacattca	8	9	1	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	8	17838141	17838141	A	C	SNP	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	missense	c.3985	p.K1329Q	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	232	0	0	114	18	13.64	-	-	-	C	17838141	A	C	17838141	3	2	796	1	0	0	0	0	1	0	0	0	11657	131	5	5	4071	5	PCM1	8	17838141	Missense_Mutation	SNP	A	TCGA-E2-A1BD-01A-11D-A12Q-09		17838141	128525881	10	67932										
COMMD5	0	genome.wustl.edu	37	chr8	146076483	146076483	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	tgccagcagggcacccagctGctcctccggcaggttggcgc	14	16	0	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	8	146076483	146076483	G	A	SNP	COMMD5	ENST00000450361	human	ensembl	69_37n	-1	known	nonsense	c.241	p.Q81*	0.786	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD5	HGNC	ENSG00000170619	11	0	0	6	4	40	-	-	-	A	146076483	G	A	146076483	4	1	796	1	0	0	0	0	0	1	0	0	3749	1328	46	4	437	4	COMMD5	8	146076483	Nonsense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09	128238342	146076483	287539	11	67933										
ZNF250	0	genome.wustl.edu	37	chr8	146107918	146107918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	acacatagggcttctctccaGtgtggatacgctgatgctga	11	10	1	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	8	146107918	146107918	G	T	SNP	ZNF250	ENST00000292579	human	ensembl	69_37n	-1	known	missense	c.665	p.T222N	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF250	HGNC	ENSG00000196150	235	0	0	125	37	22.84	-	-	-	T	146107918	G	T	146107918	3	4	796	1	0	0	0	0	1	0	0	0	17891	1029	36	4	1021	4	ZNF250	8	146107918	Missense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09	31435	146107918	256104	12	67934										
MUC5B	0	genome.wustl.edu	37	chr11	1251822	1251822	+	Frame_Shift_Del	DEL	G	G	-													0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	tgacgctcagcctggacggcGgggacacggtgaggacctgg							TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	11	1251822	1251822	G	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	frame_shift_del	c.1471	p.D492fs	0.618	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	49	0	0	9	2	18.18	-	-	-	-	1251822	G	-	1251822	7	5	796	1	0	1	0	1	0	0	0	0	10051	1116	39	0	1517	0	MUC5B	11	1251822	Frame_Shift_Del	DEL	G	TCGA-E2-A1BD-01A-11D-A12Q-09		1251822	133754694	13	67935										
KCNA1	0	genome.wustl.edu	37	chr12	5021915	5021915	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	aagtctgagtacatggagatCgaagaggatatgaataatag	12	3	1	4			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	12	5021915	5021915	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	silent	c.1371	p.I457	0.984	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	123	0	0	64	12	15.79	-	-	-	T	5021915	C	T	5021915	2	4	796	1	0	0	0	0	0	0	0	1	8055	874	31	1		1	KCNA1	12	5021915	Silent	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09		5021915	128829980	14	67936										
RERGL	0	genome.wustl.edu	37	chr12	18234200	18234200	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ttagatccactgggacgtctCttttctttgagtttgaagtt	9	7	2	3			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	12	18234200	18234200	C	G	SNP	RERGL	ENST00000229002	human	ensembl	69_37n	-1	known	missense	c.543	p.K181N	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	-	no_errors	RERGL	HGNC	ENSG00000111404	302	0	0	124	28	18.42	-	-	-	G	18234200	C	G	18234200	3	3	796	1	0	0	0	0	1	0	0	0	13316	912	32	2	78	2	RERGL	12	18234200	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	13212285	18234200	115617695	15	67937										
RNF41	0	genome.wustl.edu	37	chr12	56601499	56601499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ggttgacactgcggattgcaCgcatgtatgcctttagcagc	12	10	0	1			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	12	56601499	56601499	C	T	SNP	RNF41	ENST00000345093	human	ensembl	69_37n	-1	known	missense	c.533	p.R178H	1.000	pfam_USP8_interacting	pfam_USP8_interacting,pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,superfamily_TRAF-like,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	RNF41	HGNC	ENSG00000181852	403	0	0	133	95	41.67	-	-	-	T	56601499	C	T	56601499	3	4	796	1	0	0	0	0	1	0	0	0	13580	536	19	1	428	1	RNF41	12	56601499	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	38367299	56601499	77250396	16	67938										
UBE3B	0	genome.wustl.edu	37	chr12	109948241	109948241	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	actgccggcggcgcttcaccCccgaggaccactggctgcga	13	17	1	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	12	109948241	109948241	C	G	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.1834	p.P612A	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	60	0	0	15	15	50	-	-	-	G	109948241	C	G	109948241	3	3	796	1	0	0	0	0	1	0	0	0	16977	623	22	4	1892	4	UBE3B	12	109948241	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	53346742	109948241	23903654	17	67939										
RIMBP2	0	genome.wustl.edu	37	chr12	130935809	130935809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	ggcttggcggacagaggctcCggcctgtcaccaggctgcgg	17	13	1	1			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	12	130935809	130935809	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.384	p.P128	0.437	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	62	0	0	21	10	32.26	-	-	-	T	130935809	C	T	130935809	2	4	796	1	0	0	0	0	0	0	0	1	13447	639	23	1		1	RIMBP2	12	130935809	Silent	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	20987568	130935809	2916086	18	67940										
ITGA11	0	genome.wustl.edu	37	chr15	68613777	68613777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	tggccgtgggcaggtcactcCgggcatccaacacaaggtca	13	13	2	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	15	68613777	68613777	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.2387	p.R796Q	0.002	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	92	0	0	22	7	24.14	-	-	-	T	68613777	C	T	68613777	3	4	796	1	0	0	0	0	1	0	0	0	7928	652	23	1	1227	1	ITGA11	15	68613777	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09		68613777	33917615	19	67941										
GP2	0	genome.wustl.edu	37	chr16	20327362	20327362	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gacttgacttcttgagcaagActgtagggatgatgaacttt	11	6	1	5			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	16	20327362	20327362	A	T	SNP	GP2	ENST00000381362	human	ensembl	69_37n	-1	known	missense	c.1426	p.S476T	0.997	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	GP2	HGNC	ENSG00000169347	167	0	0	78	82	51.25	-	-	-	T	20327362	A	T	20327362	3	4	796	1	0	0	0	0	1	0	0	0	6632	289	10	5	199	5	GP2	16	20327362	Missense_Mutation	SNP	A	TCGA-E2-A1BD-01A-11D-A12Q-09		20327362	70027391	20	67942										
CACNA1A	0	genome.wustl.edu	37	chr19	13414649	13414649	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	cgccctgcacgcccccctgaGacttgatcccgtcgtacatg	9	18	0	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	19	13414649	13414649	G	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.2036	p.S679Y	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	188	0	0	56	45	44.55	-	-	-	T	13414649	G	T	13414649	3	4	796	1	0	0	0	0	1	0	0	0	2563	942	33	2	5723	2	CACNA1A	19	13414649	Missense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09		13414649	45714334	21	67943										
PLCB1	0	genome.wustl.edu	37	chr20	8721040	8721040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	aggaaccagcctctgacgctGcctgctgtctttgtctacat	9	13	3	1			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	20	8721040	8721040	G	T	SNP	PLCB1	ENST00000487210	human	ensembl	69_37n	1	known	missense	c.1580	p.C527F	0.144	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCB1	HGNC	ENSG00000182621	228	1	0.44	61	56	47.86	-	-	-	T	8721040	G	T	8721040	3	4	796	1	0	0	0	0	1	0	0	0	12101	1306	46	4	2444	4	PLCB1	20	8721040	Missense_Mutation	SNP	G	TCGA-E2-A1BD-01A-11D-A12Q-09		8721040	54304480	22	67944										
MATN4	0	genome.wustl.edu	37	chr20	43927055	43927055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gacccagagggaactcggtgCgcacgcggctcgagaactgc	15	13	0	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	20	43927055	43927055	C	T	SNP	MATN4	ENST00000372754	human	ensembl	69_37n	-1	known	missense	c.1304	p.R435H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159	15	0	0	10	5	33.33	-	-	-	T	43927055	C	T	43927055	3	4	796	1	0	0	0	0	1	0	0	0	9407	768	27	1	580	1	MATN4	20	43927055	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	35206015	43927055	19098465	23	67945										
ELMO2	0	genome.wustl.edu	37	chr20	45021747	45021747	+	Frame_Shift_Del	DEL	T	T	-													0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	cctaccggggagatagccagTtgtaagattgtcccattctt							TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	20	45021747	45021747	T	-	DEL	ELMO2	ENST00000439931	human	ensembl	69_37n	-1	known	frame_shift_del	c.228	p.Q76fs	0.999	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	270	0	0	132	66	33.17	-	-	-	-	45021747	T	-	45021747	7	5	796	1	0	1	0	1	0	0	0	0	5103	1722	60	0	2002	0	ELMO2	20	45021747	Frame_Shift_Del	DEL	T	TCGA-E2-A1BD-01A-11D-A12Q-09	1094692	45021747	18003773	24	67946										
CCT8L2	0	genome.wustl.edu	37	chr22	17071880	17071880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	gggacttttcttggccactaCgatttcatctacagtcacga	8	11	4	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	22	17071880	17071880	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	69_37n	-1	known	missense	c.1561	p.V521I	0.030	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	181	0	0	49	23	31.94	-	-	-	T	17071880	C	T	17071880	3	4	796	1	0	0	0	0	1	0	0	0	2990	536	19	1	116	1	CCT8L2	22	17071880	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09		17071880	34232686	25	67947										
SYTL5	0	genome.wustl.edu	37	chrX	37893157	37893157	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	aataccatgtctaagaactcAgagttcatcaatctgtcatt	5	9	6	2			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	X	37893157	37893157	A	T	SNP	SYTL5	ENST00000456733	human	ensembl	69_37n	1	known	silent	c.15	p.S5	0.004	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL5	HGNC	ENSG00000147041	259	0	0	75	52	40.94	-	-	-	T	37893157	A	T	37893157	2	4	796	1	0	0	0	0	0	0	0	1	15578	175	7	5		5	SYTL5	23	37893157	Silent	SNP	A	TCGA-E2-A1BD-01A-11D-A12Q-09		37893157	117377403	26	67948										
FGF16	0	genome.wustl.edu	37	chrX	76709703	76709703	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	atcagcatccggggagtggaCtctggcctgtacctaggaat	13	10	2	0			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	X	76709703	76709703	C	A	SNP	FGF16	ENST00000439435	human	ensembl	69_37n	1	known	missense	c.56	p.T19N	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGF16	HGNC	ENSG00000196468	352	1	0.28	170	126	42.57	-	-	-	A	76709703	C	A	76709703	3	1	796	1	0	0	0	0	1	0	0	0	5890	564	20	4	59	4	FGF16	23	76709703	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	38816546	76709703	78560857	27	67949										
GRIA3	0	genome.wustl.edu	37	chrX	122599568	122599568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.90917229839867	0.955365622032289	3.10493827160494	0.564534231200898	1	1	0	taaaactgaatgagcaaggcCtcttggacaaattgaaaaac	8	7	1	3			TCGA-E2-A1BD-01A-11D-A12Q-09	TCGA-E2-A1BD-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f5ac1986-272b-48d2-9a73-4a550e38a997	dcd144ae-c12f-492f-b5b4-3dd4626e27a4	X	122599568	122599568	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.2368	p.L790F	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	453	0	0	156	105	40.23	-	-	-	T	122599568	C	T	122599568	3	4	796	1	0	0	0	0	1	0	0	0	6820	681	24	4	2422	4	GRIA3	23	122599568	Missense_Mutation	SNP	C	TCGA-E2-A1BD-01A-11D-A12Q-09	45889865	122599568	32670992	28	67950										
EIF3I	0	genome.wustl.edu	37	chr1	32694376	32694376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaagactttccggacagaaCgtcctgtcaactcagctgcc	9	13	2	3			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	32694376	32694376	C	T	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	1	known	missense	c.688	p.R230C	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	63	0	0	44	21	32.31	-	-	-	T	32694376	C	T	32694376	3	4	797	1	0	0	0	0	1	0	0	0	5056	536	19	1	718	1	EIF3I	1	32694376	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09		32694376	216556245	1	67951										
CTTNBP2NL	0	genome.wustl.edu	37	chr1	112998889	112998889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aactgaaccgagaagagaacCggaccaaaaccctgaaagaa	9	10	0	5			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	112998889	112998889	C	T	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	1	known	missense	c.775	p.R259W	1.000	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	64	0	0	55	31	36.05	-	-	-	T	112998889	C	T	112998889	3	4	797	1	0	0	0	0	1	0	0	0	4078	643	23	1	789	1	CTTNBP2NL	1	112998889	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09	80304513	112998889	136251732	2	67952										
TTN	0	genome.wustl.edu	37	chr2	179444052	179444052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttatggggatcttaagccGgaagttgctgttttctttag	11	5	2	0			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179444052	179444052	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60001	p.R20001W	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	45	0	0	39	17	30.36	-	-	-	A	179444052	G	A	179444052	3	1	797	1	0	0	0	0	1	0	0	0	16832	1115	39	1	40446	1	TTN	2	179444052	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09		179444052	63755321	3	67953										
TTN	0	genome.wustl.edu	37	chr2	179479294	179479294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttactatcaacaatagtcActgtggatttcttagggaca	7	8	4	0			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179479294	179479294	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41243	p.V13748A	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	166	0	0	95	51	34.93	-	-	-	G	179479294	A	G	179479294	3	3	797	1	0	0	0	0	1	0	0	0	16832	159	6	5	59154	5	TTN	2	179479294	Missense_Mutation	SNP	A	TCGA-E2-A1IE-01A-11D-A188-09	35242	179479294	63720079	4	67954										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032045	26032045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	agagctctggaagcgaagatCggtcttgaagtcttgggcga	15	7	3	3			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	26032045	26032045	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.244	p.D82N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	61	0	0	76	13	14.61	-	-	-	T	26032045	C	T	26032045	3	4	797	1	0	0	0	0	1	0	0	0	7207	884	31	1	170	1	HIST1H3B	6	26032045	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09		26032045	145083022	5	67955										
CCND3	0	genome.wustl.edu	37	chr6	41903724	41903724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	taggagtgctggtctggctgGgcccttggctgctggagccc	17	11	1	0			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	41903724	41903724	G	C	SNP	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	missense	c.833	p.P278R	1.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	58	0	0	70	37	34.58	-	-	-	C	41903724	G	C	41903724	3	2	797	1	0	0	0	0	1	0	0	0	2947	1232	43	4	49	4	CCND3	6	41903724	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09	15871679	41903724	129211343	6	67956										
MICAL1	0	genome.wustl.edu	37	chr6	109766645	109766645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cttgcagaacctcttcatctCctcctccttcgcacggcgca	6	18	3	1			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	109766645	109766645	C	T	SNP	MICAL1	ENST00000368952	human	ensembl	69_37n	-1	known	missense	c.2818	p.E940K	0.992	NULL	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596	107	0	0	33	47	58.75	-	-	-	T	109766645	C	T	109766645	3	4	797	1	0	0	0	0	1	0	0	0	9640	864	30	2	462	2	MICAL1	6	109766645	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09	67862921	109766645	61348422	7	67957										
FBXL18	0	genome.wustl.edu	37	chr7	5545048	5545048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccacgcctgctcacctgatAgtccttttgcagcaacacgg	8	16	1	1			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	7	5545048	5545048	A	C	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.232	p.Y78D	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	40	0	0	46	63	57.27	-	-	-	C	5545048	A	C	5545048	3	2	797	1	0	0	0	0	1	0	0	0	5760	420	15	5	1940	5	FBXL18	7	5545048	Missense_Mutation	SNP	A	TCGA-E2-A1IE-01A-11D-A188-09		5545048	153593615	8	67958										
DOCK5	0	genome.wustl.edu	37	chr8	25189823	25189823	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccagaacattaaacacaacCtaaagaagttaatggaagtg	7	8	0	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	8	25189823	25189823	C	A	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.1960	p.L654I	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	118	0	0	51	70	57.85	-	-	-	A	25189823	C	A	25189823	3	1	797	1	0	0	0	0	1	0	0	0	4725	680	24	4	2034	4	DOCK5	8	25189823	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09		25189823	121174199	9	67959										
CD59	0	genome.wustl.edu	37	chr11	33731840	33731840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctcaagcgggttgtgacgtcGttgaaattgcaatgctcaaa	11	8	2	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	33731840	33731840	G	A	SNP	CD59	ENST00000533403	human	ensembl	69_37n	-1	novel	missense	c.341	p.T114M	0.000	NULL	pfam_LY6_UPAR	-	no_errors	CD59	HGNC	ENSG00000085063	110	0	0	71	42	36.84	-	-	-	A	33731840	G	A	33731840	3	1	797	1	0	0	0	0	1	0	0	0	3055	1136	40	1	171	1	CD59	11	33731840	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09		33731840	101274676	10	67960										
ATM	0	genome.wustl.edu	37	chr11	108214019	108214019	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtccccattggtgaatttcTtgttaacaatgaagatggtg	10	6	1	3			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	108214019	108214019	T	G	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.8339	p.L2780R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	81	0	0	31	37	54.41	-	-	-	G	108214019	T	G	108214019	3	3	797	1	0	0	0	0	1	0	0	0	1113	1609	56	5	8561	5	ATM	11	108214019	Missense_Mutation	SNP	T	TCGA-E2-A1IE-01A-11D-A188-09	74482179	108214019	26792497	11	67961										
OR10P1	0	genome.wustl.edu	37	chr12	56031321	56031321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgatccccttctctctgattGtcacctcttacatccgcatc	4	16	4	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	12	56031321	56031321	G	T	SNP	OR10P1	ENST00000309675	human	ensembl	69_37n	1	known	missense	c.646	p.V216F	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10P1	HGNC	ENSG00000175398	44	0	0	31	11	26.19	-	-	-	T	56031321	G	T	56031321	3	4	797	1	0	0	0	0	1	0	0	0	10988	1377	48	4	648	4	OR10P1	12	56031321	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09		56031321	77820574	12	67962										
MUC16	0	genome.wustl.edu	37	chr19	9058547	9058547	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgtctagtgacattgtggaCtgagcagggccaggaatgga	15	6	1	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	9058547	9058547	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28899	p.Q9633H	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	153	0	0	143	71	33.18	-	-	-	A	9058547	C	A	9058547	3	1	797	1	0	0	0	0	1	0	0	0	10045	564	20	4	14952	4	MUC16	19	9058547	Missense_Mutation	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09		9058547	50070436	13	67963										
SIGLEC12	0	genome.wustl.edu	37	chr19	52004795	52004795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcttacatggtcccctgcccGgaaccagtagccatgaactg	10	14	0	1			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	52004795	52004795	G	A	SNP	SIGLEC12	ENST00000291707	human	ensembl	69_37n	-1	known	missense	c.193	p.R65W	0.004	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC12	HGNC	ENSG00000254521	43	0	0	48	36	42.35	-	-	-	A	52004795	G	A	52004795	3	1	797	1	0	0	0	0	1	0	0	0	14397	1115	39	1	1699	1	SIGLEC12	19	52004795	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09	42946248	52004795	7124188	14	67964										
ZNF175	0	genome.wustl.edu	37	chr19	52091101	52091101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggagaaaccttatgaatgcaGtgactgtggaaaaaccttca	10	7	1	3			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	52091101	52091101	G	A	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	1	known	missense	c.1517	p.S506N	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	54	0	0	37	17	31.48	-	-	-	A	52091101	G	A	52091101	3	1	797	1	0	0	0	0	1	0	0	0	17841	1029	36	4	1531	4	ZNF175	19	52091101	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09	86306	52091101	7037882	15	67965										
HNF4A	0	genome.wustl.edu	37	chr20	43052731	43052731	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggtgagcttggaggactaCatcaacgaccgccagtatga	12	10	1	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	20	43052731	43052731	C	T	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	1	known	silent	c.966	p.Y322	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoid-X_rcpt/HNF4	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	14	0	0	10	7	41.18	-	-	-	T	43052731	C	T	43052731	2	4	797	1	0	0	0	0	0	0	0	1	7304	489	17	4		4	HNF4A	20	43052731	Silent	SNP	C	TCGA-E2-A1IE-01A-11D-A188-09		43052731	19972789	16	67966										
ZCCHC12	0	genome.wustl.edu	37	chrX	117960036	117960036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgacgactccgatgaggatGtgatcctggtggagtctcag	14	9	1	2			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	X	117960036	117960036	G	A	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	1	known	missense	c.829	p.V277M	0.999	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	41	0	0	36	27	42.86	-	-	-	A	117960036	G	A	117960036	3	1	797	1	0	0	0	0	1	0	0	0	17677	1377	48	4	831	4	ZCCHC12	23	117960036	Missense_Mutation	SNP	G	TCGA-E2-A1IE-01A-11D-A188-09		117960036	37310524	17	67967										
PPP1R12B	0	genome.wustl.edu	37	chr1	202411672	202411672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcccacagacaattgctcccTccacctatgtatcaacttac	3	16	1	1			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	1	202411672	202411672	T	C	SNP	PPP1R12B	ENST00000336894	human	ensembl	69_37n	1	known	missense	c.1639	p.S547P	0.996	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	41	0	0	39	6	13.33	-	-	-	C	202411672	T	C	202411672	3	2	798	1	0	0	0	0	1	0	0	0	12432	1551	54	5	1775	5	PPP1R12B	1	202411672	Missense_Mutation	SNP	T	TCGA-E2-A1IF-01A-11D-A142-09		202411672	46838949	1	67968										
AHCTF1	0	genome.wustl.edu	37	chr1	247016578	247016578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agtgagcgaggagtttccacCatcaccaaggacatcagcca	10	12	2	1			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	1	247016578	247016578	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.4405	p.G1469S	0.102	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	34	0	0	43	20	31.75	-	-	-	T	247016578	C	T	247016578	3	4	798	1	0	0	0	0	1	0	0	0	408	594	21	4	2442	4	AHCTF1	1	247016578	Missense_Mutation	SNP	C	TCGA-E2-A1IF-01A-11D-A142-09	44604906	247016578	2234043	2	67969										
NR4A2	0	genome.wustl.edu	37	chr2	157186269	157186269	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	gtggagagatcccgggtcgtCccacatggggctgtgctgca							TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	2	157186269	157186269	C	-	DEL	NR4A2	ENST00000539077	human	ensembl	69_37n	-1	known	frame_shift_del	c.463	p.D155fs	1.000	prints_NURR_rcpt,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234	39	0	0	29	5	14.29	-	-	-	-	157186269	C	-	157186269	7	5	798	1	0	1	0	1	0	0	0	0	10706	855	30	0	1390	0	NR4A2	2	157186269	Frame_Shift_Del	DEL	C	TCGA-E2-A1IF-01A-11D-A142-09		157186269	86013104	3	67970										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	44	0	0	25	5	16.67	-	-	-	G	178952085	A	G	178952085	3	3	798	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1IF-01A-11D-A142-09		178952085	19070345	4	67971										
KLHL31	0	genome.wustl.edu	37	chr6	53519409	53519409	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcaactgtaagtcatcatctAtaagaagttcattaatttgt	6	6	4	1			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	6	53519409	53519409	A	C	SNP	KLHL31	ENST00000370905	human	ensembl	69_37n	-1	known	missense	c.662	p.I221R	0.954	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743	52	0	0	30	6	16.67	-	-	-	C	53519409	A	C	53519409	3	2	798	1	0	0	0	0	1	0	0	0	8438	449	16	5	1250	5	KLHL31	6	53519409	Missense_Mutation	SNP	A	TCGA-E2-A1IF-01A-11D-A142-09		53519409	117595658	5	67972										
C7orf63	0	genome.wustl.edu	37	chr7	89938682	89938683	+	Splice_Site	INS	-	-	T													0	0	1	0	NA	0	1	1	0	taaaggccttaacacaacggINStaagattctttctccataac							TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	7	89938682	89938683	-	T	INS	C7orf63	ENST00000389297	human	ensembl	69_37n	1	known	splice_site_ins	c.2655+1_2655+1	e22+1	1.000:1.000	-	-	-	no_errors	C7orf63	HGNC	ENSG00000105792	37	0	0	24	6	20	-	-	-	T	89938683	-	T	89938682	8	5	798	1	0	1	1	0	0	0	1	0	2432	1275	44	0	2742	0	C7orf63	7	89938682	Splice_Site	INS	-	TCGA-E2-A1IF-01A-11D-A142-09		89938682	69199981	6	67973										
APBA1	0	genome.wustl.edu	37	chr9	72073092	72073092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cttcttcctgcttttggctaAtttctgggccatctgcttag	8	11	3	0			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	9	72073092	72073092	A	C	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	missense	c.1495	p.L499V	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	86	0	0	62	15	19.48	-	-	-	C	72073092	A	C	72073092	3	2	798	1	0	0	0	0	1	0	0	0	757	98	4	5	1050	5	APBA1	9	72073092	Missense_Mutation	SNP	A	TCGA-E2-A1IF-01A-11D-A142-09		72073092	69140339	7	67974										
KCNA4	0	genome.wustl.edu	37	chr11	30033418	30033418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	cacaaagccctcgtcctcccGaaacttcaacagggcctcct	6	18	1	0			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	11	30033418	30033418	G	A	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.808	p.R270W	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	24	0	0	14	5	26.32	-	-	-	A	30033418	G	A	30033418	3	1	798	1	0	0	0	0	1	0	0	0	8059	1057	37	1	1157	1	KCNA4	11	30033418	Missense_Mutation	SNP	G	TCGA-E2-A1IF-01A-11D-A142-09		30033418	104973098	8	67975										
KRAS	0	genome.wustl.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	69	0	0	35	8	18.6	-	-	-	T	25398284	C	T	25398284	3	4	798	1	0	0	0	0	1	0	0	0	8491	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-E2-A1IF-01A-11D-A142-09		25398284	108453611	9	67976										
TBX3	0	genome.wustl.edu	37	chr12	115120669	115120669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgcttgtgaaactgatcccAaagttctttagcctccaggt	8	12	1	2			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	115120669	115120669	A	G	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.337	p.W113R	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	11	0	0	8	4	33.33	-	-	-	G	115120669	A	G	115120669	3	3	798	1	0	0	0	0	1	0	0	0	15754	130	5	5	1926	5	TBX3	12	115120669	Missense_Mutation	SNP	A	TCGA-E2-A1IF-01A-11D-A142-09	89722385	115120669	18731226	10	67977										
PLA2G1B	0	genome.wustl.edu	37	chr12	120763747	120763747	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tattccaagaaggggtcactCcccgggatcacgcacttgat	10	12	2	2			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	120763747	120763747	C	A	SNP	PLA2G1B	ENST00000308366	human	ensembl	69_37n	-1	known	silent	c.111	p.G37	0.028	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	PLA2G1B	HGNC	ENSG00000170890	40	0	0	29	8	21.62	-	-	-	A	120763747	C	A	120763747	2	1	798	1	0	0	0	0	0	0	0	1	12068	842	30	2		2	PLA2G1B	12	120763747	Silent	SNP	C	TCGA-E2-A1IF-01A-11D-A142-09	5643078	120763747	13088148	11	67978										
COQ5	0	genome.wustl.edu	37	chr12	120966842	120966842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgagcacttagtaggtcccCgggccaagagctacgaagcc	12	14	0	1			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	12	120966842	120966842	C	A	SNP	COQ5	ENST00000288532	human	ensembl	69_37n	-1	known	missense	c.103	p.G35W	0.000	NULL	pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_11,pfam_Methyltransf_12,tigrfam_UbiE/COQ5_MeTrFase	-	no_errors	COQ5	HGNC	ENSG00000110871	42	0	0	44	7	13.73	-	-	-	A	120966842	C	A	120966842	3	1	798	1	0	0	0	0	1	0	0	0	3778	652	23	3	908	3	COQ5	12	120966842	Missense_Mutation	SNP	C	TCGA-E2-A1IF-01A-11D-A142-09	203095	120966842	12885053	12	67979										
PARP4	0	genome.wustl.edu	37	chr13	25021263	25021263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcacatctggattgagttgcTgccatttgacggagacagag	13	8	1	4			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	13	25021263	25021263	T	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3176	p.Q1059R	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	35	0	0	22	5	18.52	-	-	-	C	25021263	T	C	25021263	3	2	798	1	0	0	0	0	1	0	0	0	11536	1580	55	5	2034	5	PARP4	13	25021263	Missense_Mutation	SNP	T	TCGA-E2-A1IF-01A-11D-A142-09		25021263	90148615	13	67980										
ZNF747	0	genome.wustl.edu	37	chr16	30545573	30545573	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggatcctgggcagccggatcCcacagttcggccttctcctc	11	16	1	0			TCGA-E2-A1IF-01A-11D-A142-09	TCGA-E2-A1IF-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7751c2d5-e548-4439-aac1-e7b9dce97583	34cbed4d-6aff-4293-8f12-931ad2f174ca	16	30545573	30545573	C	T	SNP	ZNF747	ENST00000535210	human	ensembl	69_37n	-1	known	nonsense	c.288	p.W96*	0.967	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF747	HGNC	ENSG00000169955	13	0	0	10	10	50	-	-	-	T	30545573	C	T	30545573	4	4	798	1	0	0	0	0	0	1	0	0	18224	623	22	4	155	4	ZNF747	16	30545573	Nonsense_Mutation	SNP	C	TCGA-E2-A1IF-01A-11D-A142-09		30545573	59809180	14	67981										
MORN1	0	genome.wustl.edu	37	chr1	2304001	2304001	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ggccacttccatcacctccgGacccaagatcacgatcctcg	7	18	2	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	2304001	2304001	G	C	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	missense	c.664	p.P222A	0.839	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	30	0	0	20	8	28.57	-	-	-	C	2304001	G	C	2304001	3	2	799	1	0	0	0	0	1	0	0	0	9780	1174	41	2	857	2	MORN1	1	2304001	Missense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		2304001	246946620	1	67982										
ARID1A	0	genome.wustl.edu	37	chr1	27106363	27106363	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ccaataccattcgaagcctgTcatttgtgccaggcaatgac	8	12	1	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	27106363	27106363	T	C	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	missense	c.5974	p.S1992P	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	60	0	0	30	33	51.56	-	-	-	C	27106363	T	C	27106363	3	2	799	1	0	0	0	0	1	0	0	0	915	1667	58	5	6052	5	ARID1A	1	27106363	Missense_Mutation	SNP	T	TCGA-E2-A1IG-01A-11D-A142-09	24802362	27106363	222144258	2	67983										
MIER1	0	genome.wustl.edu	37	chr1	67424667	67424668	+	Splice_Site	INS	-	-	T													0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	tgtaaatattttgatacaagINStaagtgttactggttgataa							TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	67424667	67424668	-	T	INS	MIER1	ENST00000401041	human	ensembl	69_37n	1	known	splice_site_ins	c.634+1_634+1	e6+1	1.000:1.000	-	-	-	no_errors	MIER1	HGNC	ENSG00000198160	56	0	0	36	13	26.53	-	-	-	T	67424668	-	T	67424667	8	5	799	1	0	1	1	0	0	0	1	0	9651	1043	36	0	734	0	MIER1	1	67424667	Splice_Site	INS	-	TCGA-E2-A1IG-01A-11D-A142-09	40318304	67424667	181825954	3	67984										
CCBL2	0	genome.wustl.edu	37	chr1	89434456	89434456	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ctggaaagccttggccaagaTtcacaacagaagggtctgca	11	10	2	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	89434456	89434456	T	C	SNP	CCBL2	ENST00000260508	human	ensembl	69_37n	-1	known	missense	c.200	p.N67S	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CCBL2	HGNC	ENSG00000137944	40	0	0	25	12	32.43	-	-	-	C	89434456	T	C	89434456	3	2	799	1	0	0	0	0	1	0	0	0	2758	1493	52	5	1208	5	CCBL2	1	89434456	Missense_Mutation	SNP	T	TCGA-E2-A1IG-01A-11D-A142-09	22009789	89434456	159816165	4	67985										
OBSCN	0	genome.wustl.edu	37	chr1	228480325	228480325	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	acagtgcagcccctgtggagTggagaaaggggtctgagacc	16	9	1	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	228480325	228480325	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.10705	p.W3569R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	52	0	0	53	12	18.46	-	-	-	C	228480325	T	C	228480325	3	2	799	1	0	0	0	0	1	0	0	0	10885	1696	59	5	10859	5	OBSCN	1	228480325	Missense_Mutation	SNP	T	TCGA-E2-A1IG-01A-11D-A142-09	139045869	228480325	20770296	5	67986										
PGAP1	0	genome.wustl.edu	37	chr2	197707454	197707454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	aactactgtaccttgattttAttgaaacagtgtaagtattt	6	5	0	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	197707454	197707454	A	G	SNP	PGAP1	ENST00000354764	human	ensembl	69_37n	-1	known	missense	c.2621	p.I874T	0.993	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121	60	0	0	18	21	53.85	-	-	-	G	197707454	A	G	197707454	3	3	799	1	0	0	0	0	1	0	0	0	11851	449	16	5	155	5	PGAP1	2	197707454	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09		197707454	45491919	6	67987										
SLC16A14	0	genome.wustl.edu	37	chr2	230910775	230910775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	gaactattgctataattgacGtcagagggaaaacgtcgttt	10	6	1	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	230910775	230910775	G	A	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	missense	c.1067	p.T356M	0.995	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	29	0	0	22	13	37.14	-	-	-	A	230910775	G	A	230910775	3	1	799	1	0	0	0	0	1	0	0	0	14496	1145	40	1	473	1	SLC16A14	2	230910775	Missense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09	33203321	230910775	12288598	7	67988										
ITPR1	0	genome.wustl.edu	37	chr3	4730264	4730264	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	aggcaaccagcagaatcaagCtttgctacataaacacataa	6	10	1	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	4730264	4730264	C	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.3743	p.A1248D	0.992	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	44	0	0	37	29	43.94	-	-	-	A	4730264	C	A	4730264	3	1	799	1	0	0	0	0	1	0	0	0	7974	797	28	4	3902	4	ITPR1	3	4730264	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09		4730264	193292166	8	67989										
UMPS	0	genome.wustl.edu	37	chr3	124457125	124457125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	aatctgcaagaatcagaaatCcagcttaaactgaagaagaa	7	7	2	5			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	124457125	124457125	C	A	SNP	UMPS	ENST00000479719	human	ensembl	69_37n	1	known	missense	c.1021	p.P341T	0.008	NULL	pfam_OMPdeCOase_dom,pfam_PRibTrfase,superfamily_RibuloseP-bd_barrel,tigrfam_Or_phspho_trans_clade-1	-	no_errors	UMPS	HGNC	ENSG00000114491	19	0	0	9	8	47.06	-	-	-	A	124457125	C	A	124457125	3	1	799	1	0	0	0	0	1	0	0	0	17078	870	30	2		2	UMPS	3	124457125	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	119726861	124457125	73565305	9	67990										
THPO	0	genome.wustl.edu	37	chr3	184091243	184091243	+	Frame_Shift_Del	DEL	C	C	-													0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	gcagggccccaaggaggagaCggacctgtccagaaagctgc							TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	184091243	184091243	C	-	DEL	THPO	ENST00000204615	human	ensembl	69_37n	-1	known	frame_shift_del	c.356	p.R119fs	1.000	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534	33	0	0	24	19	41.3	-	-	-	-	184091243	C	-	184091243	7	5	799	1	0	1	0	1	0	0	0	0	15967	536	19	0	713	0	THPO	3	184091243	Frame_Shift_Del	DEL	C	TCGA-E2-A1IG-01A-11D-A142-09	59634118	184091243	13931187	10	67991										
MUC20	0	genome.wustl.edu	37	chr3	195452668	195452668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ccccatccagtcatcaccccCtcatggtccccgggatctga	7	19	4	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	195452668	195452668	C	G	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	silent	c.1194	p.P398	0.004	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	28	0	0	20	6	23.08	-	-	-	G	195452668	C	G	195452668	2	3	799	1	0	0	0	0	0	0	0	1	10048	695	24	4		4	MUC20	3	195452668	Silent	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	11361425	195452668	2569762	11	67992										
HERC6	0	genome.wustl.edu	37	chr4	89363548	89363548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	tacaatggaaagaatggaggAagcacttcaagtagccatca	10	7	2	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	4	89363548	89363548	A	G	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	missense	c.3005	p.E1002G	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	38	0	0	29	21	42	-	-	-	G	89363548	A	G	89363548	3	3	799	1	0	0	0	0	1	0	0	0	7113	246	9	5	2892	5	HERC6	4	89363548	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09		89363548	101790728	12	67993										
CENPK	0	genome.wustl.edu	37	chr5	64824380	64824380	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	atattcttttatattaagcaTtttagttttcagttcattaa	3	4	3	0			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	5	64824380	64824380	T	A	SNP	CENPK	ENST00000242872	human	ensembl	69_37n	-1	known	missense	c.496	p.M166L	0.126	pfam_Centromere_CenpK	pfam_Centromere_CenpK,superfamily_Prefoldin	-	no_errors	CENPK	HGNC	ENSG00000123219	37	0	0	31	15	32.61	-	-	-	A	64824380	T	A	64824380	3	1	799	1	0	0	0	0	1	0	0	0	3264	1493	52	5	325	5	CENPK	5	64824380	Missense_Mutation	SNP	T	TCGA-E2-A1IG-01A-11D-A142-09		64824380	116090880	13	67994										
DIAPH1	0	genome.wustl.edu	37	chr5	140960365	140960365	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	aaagcagcttagctgcatcaAtcatcatgttgggaacagca	9	9	3	0			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	5	140960365	140960365	A	C	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	missense	c.770	p.I257S	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	35	0	0	14	12	46.15	-	-	-	C	140960365	A	C	140960365	3	2	799	1	0	0	0	0	1	0	0	0	4554	101	4	5	3132	5	DIAPH1	5	140960365	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09	76135985	140960365	39954895	14	67995										
HIVEP1	0	genome.wustl.edu	37	chr6	12131113	12131113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	catgttaaagaaacacatacGaacccatacagatgtccgcc	6	12	0	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	12131113	12131113	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.6323	p.R2108Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	83	0	0	74	19	20.43	-	-	-	A	12131113	G	A	12131113	3	1	799	1	0	0	0	0	1	0	0	0	7237	1058	37	1	6341	1	HIVEP1	6	12131113	Missense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		12131113	158983954	15	67996										
GPR110	0	genome.wustl.edu	37	chr6	46975029	46975029	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ccaaagcataagataaaaaaTccctttaaaaagaaaggaat	5	6	0	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	46975029	46975029	T	C	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	silent	c.2493	p.G831	0.002	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	38	0	0	23	11	31.43	-	-	-	C	46975029	T	C	46975029	2	2	799	1	0	0	0	0	0	0	0	1	6677	1422	50	5		5	GPR110	6	46975029	Silent	SNP	T	TCGA-E2-A1IG-01A-11D-A142-09	34843916	46975029	124140038	16	67997										
GPR111	0	genome.wustl.edu	37	chr6	47646834	47646834	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	acatggcacaagatcactgaCacctgccagactcttaatgc	7	13	2	3			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	47646834	47646834	C	G	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.435	p.D145E	0.740	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	67	0	0	45	24	34.78	-	-	-	G	47646834	C	G	47646834	3	3	799	1	0	0	0	0	1	0	0	0	6678	477	17	4	241	4	GPR111	6	47646834	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	671805	47646834	123468233	17	67998										
BACH2	0	genome.wustl.edu	37	chr6	90660252	90660252	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	gtcctccgcgtaggaataggAagagcaggagctggaagtcc	15	9	0	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	90660252	90660252	A	T	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1573	p.S525T	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	35	0	0	22	15	40.54	-	-	-	T	90660252	A	T	90660252	3	4	799	1	0	0	0	0	1	0	0	0	1288	246	9	5	964	5	BACH2	6	90660252	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09	43013418	90660252	80454815	18	67999										
FRK	0	genome.wustl.edu	37	chr6	116381284	116381284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	cttgaagtttgtcacctgctCggaagctcaagtcctcagca	9	12	3	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	116381284	116381284	C	G	SNP	FRK	ENST00000368626	human	ensembl	69_37n	-1	known	missense	c.191	p.R64P	0.001	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	FRK	HGNC	ENSG00000111816	39	0	0	25	18	41.86	-	-	-	G	116381284	C	G	116381284	3	3	799	1	0	0	0	0	1	0	0	0	6097	884	31	3	1358	3	FRK	6	116381284	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	25721032	116381284	54733783	19	68000										
SYNE1	0	genome.wustl.edu	37	chr6	152861113	152861113	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	accttggccagatgagagttGatccattttgtgaaagttcg	11	7	0	4			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	152861113	152861113	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.111	p.I37	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	125	0	0	76	46	37.7	-	-	-	A	152861113	G	A	152861113	2	1	799	1	0	0	0	0	0	0	0	1	15537	1280	45	2		2	SYNE1	6	152861113	Silent	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09	36479829	152861113	18253954	20	68001										
SDK1	0	genome.wustl.edu	37	chr7	4249712	4249712	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ataacctccaccacgctcaaCgtgtcctggggcgagcctgc	10	16	1	0			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	7	4249712	4249712	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.5457	p.N1819	0.868	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	25	0	0	13	10	43.48	-	-	-	T	4249712	C	T	4249712	2	4	799	1	0	0	0	0	0	0	0	1	14056	535	19	1		1	SDK1	7	4249712	Silent	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09		4249712	154888951	21	68002										
HOOK3	0	genome.wustl.edu	37	chr8	42798513	42798513	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	atgtgaaccttattggggagCattctgatgcagcagagctt	12	7	1	3			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	8	42798513	42798513	C	A	SNP	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	missense	c.325	p.H109N	1.000	pfam_HOOK	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	69	0	0	92	24	20.69	-	-	-	A	42798513	C	A	42798513	3	1	799	1	0	0	0	0	1	0	0	0	7335	710	25	4	343	4	HOOK3	8	42798513	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09		42798513	103565509	22	68003										
PREX2	0	genome.wustl.edu	37	chr8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	tttgaaagaaagagaacggcGgaaaggtgggtgtatgaatt	15	2	0	4			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	8	68965476	68965476	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.1088	p.R363Q	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	44	0	0	40	10	19.61	-	-	-	A	68965476	G	A	68965476	3	1	799	1	0	0	0	0	1	0	0	0	12558	1116	39	1	1122	1	PREX2	8	68965476	Missense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09	26166963	68965476	77398546	23	68004										
GRIN3A	0	genome.wustl.edu	37	chr9	104433299	104433299	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	gggtcatgttgaagattccaGatgaaaaagttgttttctga	11	4	2	5			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	9	104433299	104433299	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	silent	c.1395	p.I465	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	41	0	0	39	16	29.09	-	-	-	A	104433299	G	A	104433299	2	1	799	1	0	0	0	0	0	0	0	1	6834	932	33	2		2	GRIN3A	9	104433299	Silent	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		104433299	36780132	24	68005										
LRRTM3	0	genome.wustl.edu	37	chr10	68686978	68686978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	accatatcagcaatattgacGaaaatgcttttaatggaata	6	6	1	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	68686978	68686978	G	A	SNP	LRRTM3	ENST00000361320	human	ensembl	69_37n	1	known	missense	c.304	p.E102K	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	28	0	0	24	8	25	-	-	-	A	68686978	G	A	68686978	3	1	799	1	0	0	0	0	1	0	0	0	9107	1059	37	1	310	1	LRRTM3	10	68686978	Missense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		68686978	66847769	25	68006										
DNA2	0	genome.wustl.edu	37	chr10	70182350	70182350	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	tcttgaataagctttcactcAtgccaagagctctgtcaata	6	10	5	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	70182350	70182350	A	C	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.2672	p.M891R	1.000	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	63	0	0	45	26	36.62	-	-	-	C	70182350	A	C	70182350	3	2	799	1	0	0	0	0	1	0	0	0	4632	217	8	5	792	5	DNA2	10	70182350	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09	1495372	70182350	65352397	26	68007										
BTBD16	0	genome.wustl.edu	37	chr10	124097568	124097569	+	Frame_Shift_Ins	INS	-	-	T													0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	tgtgggcatcccaatctatgINStaagttttgcattcatcttc							TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	124097568	124097569	-	T	INS	BTBD16	ENST00000368994	human	ensembl	69_37n	1	known	frame_shift_ins	c.1492_1493	p.S499fs	0.980:0.847	NULL	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152	138	0	0	71	27	27.55	-	-	-	T	124097569	-	T	124097568	7	5	799	1	0	1	1	0	0	0	0	0	1549	1377	48	0	1547	0	BTBD16	10	124097568	Frame_Shift_Ins	INS	-	TCGA-E2-A1IG-01A-11D-A142-09	53915218	124097568	11437179	27	68008										
EBF3	0	genome.wustl.edu	37	chr10	131640515	131640515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	gtgattgcggggaacgctgtAcagcgcctcggcgatgtccg	16	11	0	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	131640515	131640515	A	T	SNP	EBF3	ENST00000355311	human	ensembl	69_37n	-1	known	missense	c.1237	p.Y413N	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF3	HGNC	ENSG00000108001	26	0	0	17	7	29.17	-	-	-	T	131640515	A	T	131640515	3	4	799	1	0	0	0	0	1	0	0	0	4917	391	14	5	461	5	EBF3	10	131640515	Missense_Mutation	SNP	A	TCGA-E2-A1IG-01A-11D-A142-09	7542947	131640515	3894232	28	68009										
HSPA8	0	genome.wustl.edu	37	chr11	122930239	122930241	+	In_Frame_Del	DEL	GAA	GAA	-													0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ttattcagttcttttccattGaagaagtcttggagaagctt							TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	11	122930239	122930241	GAA	-	DEL	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	in_frame_del	c.1062_1060	p.F354in_frame_del	1.000:1.000:1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	29	0	0	12	10	45.45	-	-	-	-	122930241	GAA	-	122930239	7	5	799	1	0	1	0	1	0	0	0	0	7469	1281	45	0	898	0	HSPA8	11	122930239	In_Frame_Del	DEL	GAA	TCGA-E2-A1IG-01A-11D-A142-09		122930239	12076277	29	68010										
SPTB	0	genome.wustl.edu	37	chr14	65220359	65220359	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	cgcggggccggcagcgttgcGggctcatcaccctcgctcag	15	16	3	0			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	14	65220359	65220359	G	A	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	silent	c.6498	p.P2166	0.000	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	16	0	0	13	8	38.1	-	-	-	A	65220359	G	A	65220359	2	1	799	1	0	0	0	0	0	0	0	1	15209	1103	39	1		1	SPTB	14	65220359	Silent	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		65220359	42129181	30	68011										
DNAH9	0	genome.wustl.edu	37	chr17	11572851	11572851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ctgggtcagtttctgctgtaCgggcacatcctcactccgga	11	13	3	0			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	11572851	11572851	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.3093	p.Y1031	0.854	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	52	0	0	8	15	65.22	-	-	-	T	11572851	C	T	11572851	2	4	799	1	0	0	0	0	0	0	0	1	4643	547	19	1		1	DNAH9	17	11572851	Silent	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09		11572851	69622359	31	68012										
MAP2K4	0	genome.wustl.edu	37	chr17	12032459	12032459	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ctctttgttctctttagtatGagttggccacaggccgattt	9	9	2	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	12032459	12032459	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	nonsense	c.928	p.E310*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	38	0	0	9	10	52.63	-	-	-	T	12032459	G	T	12032459	4	4	799	1	0	0	0	0	0	1	0	0	9310	1291	45	2	929	2	MAP2K4	17	12032459	Nonsense_Mutation	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09	459608	12032459	69162751	32	68013										
NOS2	0	genome.wustl.edu	37	chr17	26116644	26116644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	actgacctttcccgtctccaCgaggggctgcggggactcat	12	14	2	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	26116644	26116644	C	T	SNP	NOS2	ENST00000313735	human	ensembl	69_37n	-1	known	missense	c.181	p.V61M	0.000	pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	44	0	0	52	40	43.48	-	-	-	T	26116644	C	T	26116644	3	4	799	1	0	0	0	0	1	0	0	0	10615	536	19	1	3380	1	NOS2	17	26116644	Missense_Mutation	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	14084185	26116644	55078566	33	68014										
ABCA10	0	genome.wustl.edu	37	chr17	67212357	67212357	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	aatatgcttttaccaactcaCcaaagaaaggccatataagc	5	10	1	1			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	67212357	67212357	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	splice_site	c.672+1	e5+1	1.000	-	-	-	no_errors	ABCA10	HGNC	ENSG00000154263	31	0	0	38	8	17.39	-	-	-	A	67212357	C	A	67212357	5	1	799	1	0	0	0	0	0	0	1	0	29	521	18	4	4090	4	ABCA10	17	67212357	Splice_Site	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09	41095713	67212357	13982853	34	68015										
DYM	0	genome.wustl.edu	37	chr18	46808427	46808427	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	atattactattttgatggagCaaggtatacaagaggagagt	11	3	0	3			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	18	46808427	46808427	C	T	SNP	DYM	ENST00000269445	human	ensembl	69_37n	-1	known	silent	c.1065	p.L355	0.996	pfam_Dymeclin,superfamily_ARM-type_fold	pfam_Dymeclin,superfamily_ARM-type_fold	-	no_errors	DYM	HGNC	ENSG00000141627	60	0	0	42	28	40	-	-	-	T	46808427	C	T	46808427	2	4	799	1	0	0	0	0	0	0	0	1	4875	709	25	4		4	DYM	18	46808427	Silent	SNP	C	TCGA-E2-A1IG-01A-11D-A142-09		46808427	31268821	35	68016										
CEACAM20	0	genome.wustl.edu	37	chr19	45024705	45024705	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	cattcacactctgattgacgGtttggcaggtcaggtccaca	10	11	3	2			TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	19	45024705	45024705	G	A	SNP	CEACAM20	ENST00000316962	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	40	0	0	36	11	23.4	-	-	-	A	45024705	G	A	45024705	1	1	799	0	1	0	0	0	0	0	0	0	3220	1261	44	4		4	CEACAM20	19	45024705	RNA	SNP	G	TCGA-E2-A1IG-01A-11D-A142-09		45024705	14104278	36	68017										
COL4A5	0	genome.wustl.edu	37	chrX	107834827	107834828	+	Frame_Shift_Ins	INS	-	-	A													0.0540540540540541	2	0.99043758096535	0.718160377358491	0	0.957547169811321	0.4	0.991179622791967	0	ccaggccctccaggccccccINSaggatctccaggtgataaag							TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	X	107834827	107834828	-	A	INS	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	frame_shift_ins	c.1376_1377	p.G460fs	0.981:0.853	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	47	0	0	26	19	42.22	-	-	-	A	107834828	-	A	107834827	7	5	799	1	0	1	1	0	0	0	0	0	3724	594	21	0	1458	0	COL4A5	23	107834827	Frame_Shift_Ins	INS	-	TCGA-E2-A1IG-01A-11D-A142-09		107834827	47435733	37	68018										
GJB5	0	genome.wustl.edu	37	chr1	35223650	35223650	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	taccacctcttcctgcaaacAagacgacctcctttcgggtg	7	15	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	35223650	35223650	A	C	SNP	GJB5	ENST00000338513	human	ensembl	69_37n	1	known	missense	c.719	p.Q240P	0.057	prints_Connexin311	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin311	-	no_errors	GJB5	HGNC	ENSG00000189280	93	0	0	80	21	20.79	-	-	-	C	35223650	A	C	35223650	3	2	800	1	0	0	0	0	1	0	0	0	6463	130	5	5	721	5	GJB5	1	35223650	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09		35223650	214026971	1	68019										
SLC16A1	0	genome.wustl.edu	37	chr1	113471850	113471850	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	taagagaagccgatggaaatGaaagctccaattaccactgc	9	9	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	113471850	113471850	G	C	SNP	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	missense	c.81	p.F27L	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	28	0	0	17	13	43.33	-	-	-	C	113471850	G	C	113471850	3	2	800	1	0	0	0	0	1	0	0	0	14491	1281	45	2	1437	2	SLC16A1	1	113471850	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	78248200	113471850	135778771	2	68020										
SELP	0	genome.wustl.edu	37	chr1	169562905	169562905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	cacccattatcagacctatcGtagaagccaccgctccacca	5	17	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	169562905	169562905	G	A	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.2345	p.T782M	0.000	NULL	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	88	0	0	63	70	52.24	-	-	-	A	169562905	G	A	169562905	3	1	800	1	0	0	0	0	1	0	0	0	14107	1145	40	1	159	1	SELP	1	169562905	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	56091055	169562905	79687716	3	68021										
KCNH1	0	genome.wustl.edu	37	chr1	211263988	211263988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	taaaaccactttatcctgttCgtttcgaattggagcaattt	6	8	0	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	211263988	211263988	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.355	p.E119K	1.000	pfam_PAS_fold,smart_PAC,prints_K_chnl_volt-dep_EAG,pfscan_PAS-assoc_C,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	84	0	0	75	76	50.33	-	-	-	T	211263988	C	T	211263988	3	4	800	1	0	0	0	0	1	0	0	0	8085	893	31	1	2646	1	KCNH1	1	211263988	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	41701083	211263988	37986633	4	68022										
PLEKHH2	0	genome.wustl.edu	37	chr2	43992655	43992655	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	agcactgctctcagcccagaCccggggaccccaagccagaa	10	17	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	43992655	43992655	C	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	1	known	missense	c.4400	p.T1467N	0.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	79	0	0	63	19	23.17	-	-	-	A	43992655	C	A	43992655	3	1	800	1	0	0	0	0	1	0	0	0	12151	507	18	4	4514	4	PLEKHH2	2	43992655	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		43992655	199206718	5	68023										
APLF	0	genome.wustl.edu	37	chr2	68740758	68740758	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	aaagaatccttccaacttggAtgttagcagaacatttaagt	7	7	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	68740758	68740758	A	T	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	missense	c.568	p.M190L	1.000	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	67	0	0	67	22	24.72	-	-	-	T	68740758	A	T	68740758	3	4	800	1	0	0	0	0	1	0	0	0	777	333	12	5	586	5	APLF	2	68740758	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09	24748103	68740758	174458615	6	68024										
TTN	0	genome.wustl.edu	37	chr2	179605501	179605501	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gttttctgggactgtacaatCtgcagctgtaggttgggaga	14	6	2	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	179605501	179605501	C	G	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.11946	p.Q3982H	0.141	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	76	0	0	85	17	16.67	-	-	-	G	179605501	C	G	179605501	3	3	800	1	0	0	0	0	1	0	0	0	16832	912	32	2	92330	2	TTN	2	179605501	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	110864743	179605501	63593872	7	68025										
CCDC141	0	genome.wustl.edu	37	chr2	179718227	179718227	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tttcttcttgctgcggcactGagggtgcaataaacttatta	9	8	2	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	179718227	179718227	G	A	SNP	CCDC141	ENST00000420890	human	ensembl	69_37n	-1	known	missense	c.3185	p.S1062L	0.956	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CCDC141	HGNC	ENSG00000163492	132	0	0	154	23	12.99	-	-	-	A	179718227	G	A	179718227	3	1	800	1	0	0	0	0	1	0	0	0	2800	1294	45	2	1183	2	CCDC141	2	179718227	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	112726	179718227	63481146	8	68026										
HSPD1	0	genome.wustl.edu	37	chr2	198363536	198363537	+	Frame_Shift_Ins	INS	-	-	T													0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gccagtaccctggacaccggINStctcatctggcgaaagactg							TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	198363536	198363537	-	T	INS	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	frame_shift_ins	c.37_36	p.P12fs	1.000:1.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	41	0	0	26	9	25.71	-	-	-	T	198363537	-	T	198363536	7	5	800	1	0	1	1	0	0	0	0	0	7482	1261	44	0	1728	0	HSPD1	2	198363536	Frame_Shift_Ins	INS	-	TCGA-E2-A1IH-01A-11D-A188-09	18645309	198363536	44835837	9	68027										
TRAK2	0	genome.wustl.edu	37	chr2	202245814	202245814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	catggtgctactgaaggttgTagtggaatctcgtcggttgg	15	6	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	202245814	202245814	T	C	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.2197	p.T733A	0.000	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	115	0	0	103	17	14.17	-	-	-	C	202245814	T	C	202245814	3	2	800	1	0	0	0	0	1	0	0	0	16546	1638	57	5	551	5	TRAK2	2	202245814	Missense_Mutation	SNP	T	TCGA-E2-A1IH-01A-11D-A188-09	3882278	202245814	40953559	10	68028										
SH3BP5	0	genome.wustl.edu	37	chr3	15300446	15300446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ccccatggcactggagcgccGccgctcgtggatctcatctg	12	16	2	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	15300446	15300446	G	A	SNP	SH3BP5	ENST00000383791	human	ensembl	69_37n	-1	known	missense	c.781	p.R261W	0.808	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5	HGNC	ENSG00000131370	60	0	0	60	26	29.55	-	-	-	A	15300446	G	A	15300446	3	1	800	1	0	0	0	0	1	0	0	0	14335	1086	38	1	598	1	SH3BP5	3	15300446	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		15300446	182721984	11	68029										
ZNF619	0	genome.wustl.edu	37	chr3	40528668	40528668	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	attcagactttcacctgcatCagagagttcacactaatgag	7	10	4	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	40528668	40528668	C	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	1	known	nonsense	c.787	p.Q263*	0.978	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	34	0	0	25	17	40.48	-	-	-	T	40528668	C	T	40528668	4	4	800	1	0	0	0	0	0	1	0	0	18139	827	29	2	827	2	ZNF619	3	40528668	Nonsense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	25228222	40528668	157493762	12	68030										
PRICKLE2	0	genome.wustl.edu	37	chr3	64142855	64142855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	aacctcatcgcaggcagcacAgcgcggcttcaggcactcag	11	15	3	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	64142855	64142855	A	G	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	missense	c.583	p.C195R	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	35	0	0	44	11	20	-	-	-	G	64142855	A	G	64142855	3	3	800	1	0	0	0	0	1	0	0	0	12568	188	7	5	1967	5	PRICKLE2	3	64142855	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09	23614187	64142855	133879575	13	68031										
UROC1	0	genome.wustl.edu	37	chr3	126222869	126222869	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gatgcagcggtccaagctgtCagtcacttccatcagccagc	10	14	3	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	126222869	126222869	C	T	SNP	UROC1	ENST00000290868	human	ensembl	69_37n	-1	known	missense	c.871	p.D291N	0.998	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	80	0	0	65	33	33.67	-	-	-	T	126222869	C	T	126222869	3	4	800	1	0	0	0	0	1	0	0	0	17125	826	29	2	1391	2	UROC1	3	126222869	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	62080014	126222869	71799561	14	68032										
TTC14	0	genome.wustl.edu	37	chr3	180328183	180328183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gacaattatggggaggatatCaaaacagaggttccagaaga	12	5	1	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	180328183	180328183	C	G	SNP	TTC14	ENST00000296015	human	ensembl	69_37n	1	known	missense	c.2166	p.I722M	0.007	NULL	pfam_TPR-1,superfamily_NA-bd_OB-fold-like,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728	32	0	0	38	12	24	-	-	-	G	180328183	C	G	180328183	3	3	800	1	0	0	0	0	1	0	0	0	16778	816	29	2	2242	2	TTC14	3	180328183	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	54105314	180328183	17694247	15	68033										
ZDHHC19	0	genome.wustl.edu	37	chr3	195925458	195925458	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	agcctcatccaggatgcagcAgccctgtatgccatagtggg	12	12	1	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	195925458	195925458	A	C	SNP	ZDHHC19	ENST00000397544	human	ensembl	69_37n	-1	known	silent	c.777	p.A259	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958	8	0	0	12	12	50	-	-	-	C	195925458	A	C	195925458	2	2	800	1	0	0	0	0	0	0	0	1	17705	203	7	5		5	ZDHHC19	3	195925458	Silent	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09	15597275	195925458	2096972	16	68034										
NOP14	0	genome.wustl.edu	37	chr4	2940561	2940561	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tatttataaaatgtaatttaTtttttgaactttttcctctt	2	4	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	4	2940561	2940561	T	A	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	missense	c.2571	p.K857N	0.737	NULL	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	161	0	0	105	25	19.23	-	-	-	A	2940561	T	A	2940561	3	1	800	1	0	0	0	0	1	0	0	0	10608	1490	52	5	6	5	NOP14	4	2940561	Missense_Mutation	SNP	T	TCGA-E2-A1IH-01A-11D-A188-09		2940561	188213715	17	68035										
NUP155	0	genome.wustl.edu	37	chr5	37330153	37330153	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	cacatacctaaagaaagcccGagtagcccaggcagatactt	8	12	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	5	37330153	37330153	G	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	silent	c.1711	p.R571	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	71	0	0	61	29	32.22	-	-	-	T	37330153	G	T	37330153	2	4	800	1	0	0	0	0	0	0	0	1	10829	1057	37	3		3	NUP155	5	37330153	Silent	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		37330153	143585107	18	68036										
DDX4	0	genome.wustl.edu	37	chr5	55042014	55042014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	taggtattctggagaaaatgGagacaattttaacaggactc	10	5	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	5	55042014	55042014	G	C	SNP	DDX4	ENST00000505374	human	ensembl	69_37n	1	known	missense	c.92	p.G31A	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	115	0	0	127	51	28.65	-	-	-	C	55042014	G	C	55042014	3	2	800	1	0	0	0	0	1	0	0	0	4391	1174	41	2	98	2	DDX4	5	55042014	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	17711861	55042014	125873246	19	68037										
MYO6	0	genome.wustl.edu	37	chr6	76623827	76623827	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ctgccaggcagcgggagattGaaatgaaccgacagcaacgc	13	11	0	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	76623827	76623827	G	A	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.3490	p.E1164K	1.000	NULL	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	73	0	0	48	40	45.45	-	-	-	A	76623827	G	A	76623827	3	1	800	1	0	0	0	0	1	0	0	0	10153	1291	45	2	3617	2	MYO6	6	76623827	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		76623827	94491240	20	68038										
DOPEY1	0	genome.wustl.edu	37	chr6	83869520	83869520	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gtctcctgcttacaggacttCagggccctctgtggctggtc	12	13	3	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	83869520	83869520	C	A	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	nonsense	c.6803	p.S2268*	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	105	0	0	92	22	19.3	-	-	-	A	83869520	C	A	83869520	4	1	800	1	0	0	0	0	0	1	0	0	4742	838	29	2	6941	2	DOPEY1	6	83869520	Nonsense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	7245693	83869520	87245547	21	68039										
SYTL3	0	genome.wustl.edu	37	chr6	159184541	159184541	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gaggaaccagacttggttcaAgtaagtctgagacattgagc	12	7	2	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	159184541	159184541	A	C	SNP	SYTL3	ENST00000297239	human	ensembl	69_37n	1	known	missense	c.1723	p.K575Q	0.996	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL3	HGNC	ENSG00000164674	32	0	0	42	14	25	-	-	-	C	159184541	A	C	159184541	3	2	800	1	0	0	0	0	1	0	0	0	15576	86	3	5	1565	5	SYTL3	6	159184541	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09	75315021	159184541	11930526	22	68040										
THAP5	0	genome.wustl.edu	37	chr7	108204886	108204886	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ttgtaaaacttctgtcccatAgtctacatccttatacaagg	5	10	2	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	7	108204886	108204886	A	G	SNP	THAP5	ENST00000415914	human	ensembl	69_37n	-1	known	missense	c.937	p.Y313H	0.009	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP5	HGNC	ENSG00000177683	123	0	0	151	55	26.7	-	-	-	G	108204886	A	G	108204886	3	3	800	1	0	0	0	0	1	0	0	0	15942	420	15	5	254	5	THAP5	7	108204886	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09		108204886	50933777	23	68041										
MTSS1	0	genome.wustl.edu	37	chr8	125711807	125711807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tcagccactttctgaaaggcGtccaagaaggcagctgctgc	11	12	2	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	8	125711807	125711807	G	A	SNP	MTSS1	ENST00000522162	human	ensembl	69_37n	-1	putative	missense	c.152	p.T51M	0.728	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTSS1	HGNC	ENSG00000170873	71	0	0	98	25	20.33	-	-	-	A	125711807	G	A	125711807	3	1	800	1	0	0	0	0	1	0	0	0	10034	1136	40	1	2147	1	MTSS1	8	125711807	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		125711807	20652215	24	68042										
EPPK1	0	genome.wustl.edu	37	chr8	144940300	144940300	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tcgctggggtcggccaggacGcggttcatctcctcgtcgaa	14	13	2	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	8	144940300	144940300	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.7122	p.R2374	0.998	pfam_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	44	0	0	156	201	56.3	-	-	-	A	144940300	G	A	144940300	2	1	800	1	0	0	0	0	0	0	0	1	5227	1074	38	1		1	EPPK1	8	144940300	Silent	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	19228493	144940300	1423722	25	68043										
PSIP1	0	genome.wustl.edu	37	chr9	15489983	15489983	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	attttatgtaatatgacttaCctgttgacttgaaaatttca	5	5	1	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	15489983	15489983	C	A	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	splice_site	c.288+1	e3+1	1.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985	134	0	0	158	29	15.34	-	-	-	A	15489983	C	A	15489983	5	1	800	1	0	0	0	0	0	0	1	0	12743	521	18	4	1384	4	PSIP1	9	15489983	Splice_Site	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		15489983	125723448	26	68044										
OR1L8	0	genome.wustl.edu	37	chr9	125329986	125329986	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gggggctgtaaatagacacaGaagatgcttccataaaagag	12	6	0	4			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	125329986	125329986	G	T	SNP	OR1L8	ENST00000304865	human	ensembl	69_37n	-1	known	missense	c.771	p.F257L	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1L8	HGNC	ENSG00000171496	39	0	0	45	11	19.64	-	-	-	T	125329986	G	T	125329986	3	4	800	1	0	0	0	0	1	0	0	0	11040	933	33	2	162	2	OR1L8	9	125329986	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	109840003	125329986	15883445	27	68045										
YME1L1	0	genome.wustl.edu	37	chr10	27437888	27437888	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	atctcgatgctggttttgagAaactgacactccactgagag	10	9	1	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	27437888	27437888	A	G	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	missense	c.115	p.S39P	0.062	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	79	0	0	106	43	28.86	-	-	-	G	27437888	A	G	27437888	3	3	800	1	0	0	0	0	1	0	0	0	17584	246	9	5	2282	5	YME1L1	10	27437888	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09		27437888	108096859	28	68046										
JMJD1C	0	genome.wustl.edu	37	chr10	64968401	64968401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gtttaacctctctccagtctCctggggtggcctctgtaact	9	13	3	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	64968401	64968401	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.3028	p.E1010K	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	139	0	0	129	41	24.12	-	-	-	T	64968401	C	T	64968401	3	4	800	1	0	0	0	0	1	0	0	0	8004	864	30	2	4662	2	JMJD1C	10	64968401	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	37530513	64968401	70566346	29	68047										
CDH23	0	genome.wustl.edu	37	chr10	73326553	73326553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	atgccacagaccccgacttgGgggcagggggcagcgtcctc	15	14	0	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	73326553	73326553	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.499	p.G167R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	35	0	0	45	12	21.05	-	-	-	A	73326553	G	A	73326553	3	1	800	1	0	0	0	0	1	0	0	0	3137	1232	43	4	506	4	CDH23	10	73326553	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	8358152	73326553	62208194	30	68048										
PTEN	0	genome.wustl.edu	37	chr10	89690810	89690813	+	Frame_Shift_Del	DEL	GAAA	GAAA	-													0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	acttttcttttagttgtgctGaaagacattatgacaccgcc							TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	GAAA	GAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	89690810	89690813	GAAA	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.217_220	p.E73fs	1.000:1.000:1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	80	0	0	41	29	41.43	-	-	-	-	89690813	GAAA	-	89690810	7	5	800	1	0	1	0	1	0	0	0	0	12818	1291	45	0	231	0	PTEN	10	89690810	Frame_Shift_Del	DEL	GAAA	TCGA-E2-A1IH-01A-11D-A188-09	16364257	89690810	45843937	31	68049										
LMO2	0	genome.wustl.edu	37	chr11	33886168	33886168	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ctgagatagtctctccggcaGagcttccggcccagtttgta	11	12	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	33886168	33886168	G	A	SNP	LMO2	ENST00000257818	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	0.890	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO2	HGNC	ENSG00000135363	20	0	0	30	5	13.89	-	-	-	A	33886168	G	A	33886168	2	1	800	1	0	0	0	0	0	0	0	1	8908	929	33	2		2	LMO2	11	33886168	Silent	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		33886168	101120348	32	68050										
SART1	0	genome.wustl.edu	37	chr11	65746121	65746121	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ggcaagggctcaggcaagatGaagacagagcggcggatgaa	17	7	1	5			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	65746121	65746121	G	T	SNP	SART1	ENST00000312397	human	ensembl	69_37n	1	known	missense	c.2223	p.M741I	1.000	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	30	0	0	92	12	11.54	-	-	-	T	65746121	G	T	65746121	3	4	800	1	0	0	0	0	1	0	0	0	13933	1290	45	2	2293	2	SART1	11	65746121	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	31859953	65746121	69260395	33	68051										
RPS6KB2	0	genome.wustl.edu	37	chr11	67200221	67200221	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tctgcagcttctacctggctGagatcacgctggccctgggc	12	14	3	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	67200221	67200221	G	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	69_37n	1	known	missense	c.529	p.E177K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634	128	0	0	111	28	20.14	-	-	-	A	67200221	G	A	67200221	3	1	800	1	0	0	0	0	1	0	0	0	13743	1291	45	2	555	2	RPS6KB2	11	67200221	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	1454100	67200221	67806295	34	68052										
PPFIA1	0	genome.wustl.edu	37	chr11	70171069	70171069	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tccagcgaagtggaagtgctGaaagcactgaagtccttatt	11	8	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	70171069	70171069	G	C	SNP	PPFIA1	ENST00000253925	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.917	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	29	0	0	21	8	27.59	-	-	-	C	70171069	G	C	70171069	2	2	800	1	0	0	0	0	0	0	0	1	12382	1277	45	2		2	PPFIA1	11	70171069	Silent	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	2970848	70171069	64835447	35	68053										
C2CD3	0	genome.wustl.edu	37	chr11	73872571	73872571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ttggaagaccatcaagtttgGtgattacttccagcaccagc	9	10	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	73872571	73872571	G	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.356	p.T119N	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	80	0	0	86	53	38.13	-	-	-	T	73872571	G	T	73872571	3	4	800	1	0	0	0	0	1	0	0	0	2174	1261	44	4	5651	4	C2CD3	11	73872571	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	3701502	73872571	61133945	36	68054										
GALNT8	0	genome.wustl.edu	37	chr12	4855388	4855388	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tctctggatggtggaatgctCatctatggaggagagaacgt	14	6	3	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	4855388	4855388	C	T	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	silent	c.1137	p.L379	0.926	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	122	0	0	143	62	30.1	-	-	-	T	4855388	C	T	4855388	2	4	800	1	0	0	0	0	0	0	0	1	6269	813	29	2		2	GALNT8	12	4855388	Silent	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		4855388	128996507	37	68055										
KRT1	0	genome.wustl.edu	37	chr12	53074048	53074048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ggagctgctggtggtcctgcGctggtagttgatgatcccag	16	9	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	53074048	53074048	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.85	p.R29C	0.583	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	170	0	0	81	16	16.49	-	-	-	A	53074048	G	A	53074048	3	1	800	1	0	0	0	0	1	0	0	0	8500	1087	38	1	1885	1	KRT1	12	53074048	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	48218660	53074048	80777847	38	68056										
TAOK3	0	genome.wustl.edu	37	chr12	118610295	118610295	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tgctgctccacctcgtgccgCttgatcattattttccgctt	7	14	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	118610295	118610295	C	T	SNP	TAOK3	ENST00000392533	human	ensembl	69_37n	-1	known	silent	c.1866	p.K622	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	244	0	0	161	35	17.86	-	-	-	T	118610295	C	T	118610295	2	4	800	1	0	0	0	0	0	0	0	1	15641	796	28	4		4	TAOK3	12	118610295	Silent	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	65536247	118610295	15241600	39	68057										
RB1	0	genome.wustl.edu	37	chr13	48954373	48954373	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gaggttgtaatggccacataTagcagtaagttaaattttca	9	5	1	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	13	48954373	48954373	T	C	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	silent	c.1494	p.Y498	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	101	0	0	75	31	29.25	-	-	-	C	48954373	T	C	48954373	2	2	800	1	0	0	0	0	0	0	0	1	13181	1413	49	5		5	RB1	13	48954373	Silent	SNP	T	TCGA-E2-A1IH-01A-11D-A188-09		48954373	66215505	40	68058										
RNF31	0	genome.wustl.edu	37	chr14	24619840	24619840	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tgctggcctctgcccagagtCaagtctggtactgtattcac	10	12	4	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	14	24619840	24619840	C	G	SNP	RNF31	ENST00000324103	human	ensembl	69_37n	1	known	missense	c.1231	p.Q411E	0.269	smart_Znf_RanBP2	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098	88	0	0	55	25	31.25	-	-	-	G	24619840	C	G	24619840	3	3	800	1	0	0	0	0	1	0	0	0	13573	827	29	2	1261	2	RNF31	14	24619840	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		24619840	82729700	41	68059										
MPP5	0	genome.wustl.edu	37	chr14	67790494	67790494	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ccccttcacaagaaagacttCgggcattattggccaaagaa	8	11	1	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	14	67790494	67790494	C	G	SNP	MPP5	ENST00000261681	human	ensembl	69_37n	1	known	missense	c.1816	p.R606G	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP5	HGNC	ENSG00000072415	44	0	0	72	33	31.43	-	-	-	G	67790494	C	G	67790494	3	3	800	1	0	0	0	0	1	0	0	0	9809	875	31	3	1862	3	MPP5	14	67790494	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	43170654	67790494	39559046	42	68060										
RYR3	0	genome.wustl.edu	37	chr15	33954810	33954810	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	cccttggagagtctcaggacGaaggctctgagtatgctgac	13	10	2	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	15	33954810	33954810	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.5079	p.T1693	0.223	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	92	0	0	68	34	33.33	-	-	-	A	33954810	G	A	33954810	2	1	800	1	0	0	0	0	0	0	0	1	13856	1045	37	1		1	RYR3	15	33954810	Silent	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		33954810	68576582	43	68061										
DMXL2	0	genome.wustl.edu	37	chr15	51742471	51742471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tgcagacgtgtcctttcctaCcccccgagattaggagttgc	10	13	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	15	51742471	51742471	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.8759	p.G2920D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	101	0	0	116	53	31.36	-	-	-	T	51742471	C	T	51742471	3	4	800	1	0	0	0	0	1	0	0	0	4631	507	18	4	362	4	DMXL2	15	51742471	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	17787661	51742471	50788921	44	68062										
ATP2A1	0	genome.wustl.edu	37	chr16	28913342	28913342	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gtggaggagggccgcgccatCtacaacaacatgaagcagtt	13	10	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	28913342	28913342	C	G	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	missense	c.2259	p.I753M	1.000	prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	132	0	0	140	53	27.32	-	-	-	G	28913342	C	G	28913342	3	3	800	1	0	0	0	0	1	0	0	0	1140	903	32	2	2321	2	ATP2A1	16	28913342	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		28913342	61441411	45	68063										
NFATC3	0	genome.wustl.edu	37	chr16	68215432	68215432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	aatcagggaaaaatgtcaagGggtaagaaatttaccttaat	9	4	2	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	68215432	68215432	G	A	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.1970	p.G657E	1.000	superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	49	0	0	70	15	17.65	-	-	-	A	68215432	G	A	68215432	3	1	800	1	0	0	0	0	1	0	0	0	10436	1246	43	4	1996	4	NFATC3	16	68215432	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	39302090	68215432	22139321	46	68064										
CDH1	0	genome.wustl.edu	37	chr16	68856011	68856011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tattcttctgtgagaggaatCcaaagcctcaggtcataaac	8	9	4	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	68856011	68856011	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.1819	p.P607S	0.914	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	71	0	0	42	19	31.15	-	-	-	T	68856011	C	T	68856011	3	4	800	1	0	0	0	0	1	0	0	0	3124	855	30	2	1865	2	CDH1	16	68856011	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	640579	68856011	21498742	47	68065										
KCNJ12	0	genome.wustl.edu	37	chr17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gcagcggccctacagacgggAgtcagagatctgagccaacc	13	13	2	3			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	21319943	21319943	A	G	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	1	known	missense	c.1289	p.E430G	1.000	NULL	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	9	0	0	15	11	42.31	-	-	-	G	21319943	A	G	21319943	3	3	800	1	0	0	0	0	1	0	0	0	8100	304	11	5	1291	5	KCNJ12	17	21319943	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09		21319943	59875267	48	68066										
SPAG9	0	genome.wustl.edu	37	chr17	49067939	49067939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tgtctgtctctgctgagctgTtgcttgtcatacttccacat	8	11	3	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	49067939	49067939	T	C	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.2489	p.N830S	1.000	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	98	0	0	97	29	23.02	-	-	-	C	49067939	T	C	49067939	3	2	800	1	0	0	0	0	1	0	0	0	15076	1725	60	5	1520	5	SPAG9	17	49067939	Missense_Mutation	SNP	T	TCGA-E2-A1IH-01A-11D-A188-09	27747996	49067939	32127271	49	68067										
ABCA8	0	genome.wustl.edu	37	chr17	66928618	66928618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tcatattttttccagtaactGacatcagctcctccatcact	3	13	3	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	66928618	66928618	G	A	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.608	p.S203L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	66	0	0	74	24	24.49	-	-	-	A	66928618	G	A	66928618	3	1	800	1	0	0	0	0	1	0	0	0	38	1294	45	2	4269	2	ABCA8	17	66928618	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	17860679	66928618	14266592	50	68068										
NETO1	0	genome.wustl.edu	37	chr18	70417314	70417314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gaccgctggacggctttatcGtgtctggacagcctgtgact	13	11	1	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	18	70417314	70417314	G	T	SNP	NETO1	ENST00000327305	human	ensembl	69_37n	-1	known	missense	c.1524	p.H508Q	0.999	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	139	0	0	74	29	28.16	-	-	-	T	70417314	G	T	70417314	3	4	800	1	0	0	0	0	1	0	0	0	10411	1136	40	3	85	3	NETO1	18	70417314	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		70417314	7659934	51	68069										
CACNA1A	0	genome.wustl.edu	37	chr19	13368334	13368334	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ggggctggggccctggttctCaaaggtggcgtccaccgaat	16	11	1	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	13368334	13368334	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.4420	p.E1474K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	139	0	0	166	33	16.58	-	-	-	T	13368334	C	T	13368334	3	4	800	1	0	0	0	0	1	0	0	0	2563	835	29	2	3282	2	CACNA1A	19	13368334	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09		13368334	45760649	52	68070										
PAK4	0	genome.wustl.edu	37	chr19	39660228	39660228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	gaagaagcgggtggagatctCcgcgccgtccaacttcgagc	14	12	1	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	39660228	39660228	C	T	SNP	PAK4	ENST00000358301	human	ensembl	69_37n	1	known	missense	c.35	p.S12F	0.998	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	11	0	0	17	7	28	-	-	-	T	39660228	C	T	39660228	3	4	800	1	0	0	0	0	1	0	0	0	11476	855	30	2	37	2	PAK4	19	39660228	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	26291894	39660228	19468755	53	68071										
PPP2R1A	0	genome.wustl.edu	37	chr19	52705251	52705251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	tcgccttggcccttggggttGaaaggacccgaagtgagctt	14	10	0	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	52705251	52705251	G	C	SNP	PPP2R1A	ENST00000322088	human	ensembl	69_37n	1	known	missense	c.133	p.E45Q	0.998	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	69	0	0	87	21	19.44	-	-	-	C	52705251	G	C	52705251	3	2	800	1	0	0	0	0	1	0	0	0	12459	1291	45	2	139	2	PPP2R1A	19	52705251	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	13045023	52705251	6423732	54	68072										
ZNF578	0	genome.wustl.edu	37	chr19	53014257	53014257	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	aacacatactcctaataactAtgggaataattttttccatt	3	8	0	0			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	53014257	53014257	A	T	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	1	known	missense	c.623	p.Y208F	0.493	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	78	0	0	91	29	23.97	-	-	-	T	53014257	A	T	53014257	3	4	800	1	0	0	0	0	1	0	0	0	18106	449	16	5	633	5	ZNF578	19	53014257	Missense_Mutation	SNP	A	TCGA-E2-A1IH-01A-11D-A188-09	309006	53014257	6114726	55	68073										
APP	0	genome.wustl.edu	37	chr21	27254037	27254037	+	Nonsense_Mutation	SNP	G	G	A													0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	attttcgtagccgttctgctGcatcttggacaggtggcgct							TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	21	27254037	27254037	G	A	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	nonsense	c.2257	p.Q753*	1.000	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	114	0	0	86	17	16.5	-	-	-	A	27254037	G	A	27254037	4	1	800	1	0	0	0	0	0	1	0	0	817	1328	46	4	59	4	APP	21	27254037	Nonsense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09		27254037	20875858	56	68074	487	2								
APP	0	genome.wustl.edu	37	chr21	27254038	27254038	+	Missense_Mutation	SNP	C	C	A													0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ttttcgtagccgttctgctgCatcttggacaggtggcgctc							TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	21	27254038	27254038	C	A	SNP	APP	ENST00000346798	human	ensembl	69_37n	-1	known	missense	c.2256	p.M752I	1.000	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	113	0	0	88	17	16.19	-	-	-	A	27254038	C	A	27254038	3	1	800	1	0	0	0	0	1	0	0	0	817	710	25	4	60	4	APP	21	27254038	Missense_Mutation	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	1	27254038	20875857	57	68075	487	2								
FANCB	0	genome.wustl.edu	37	chrX	14871186	14871186	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ctgcacttgacgtattatcaTcttttccttgaactaggttt	6	9	2	2			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	14871186	14871186	T	A	SNP	FANCB	ENST00000324138	human	ensembl	69_37n	-1	known	missense	c.1301	p.D434V	0.000	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544	126	0	0	147	39	20.97	-	-	-	A	14871186	T	A	14871186	3	1	800	1	0	0	0	0	1	0	0	0	5709	1435	50	5	1298	5	FANCB	23	14871186	Missense_Mutation	SNP	T	TCGA-E2-A1IH-01A-11D-A188-09		14871186	140399374	58	68076										
SLC7A3	0	genome.wustl.edu	37	chrX	70149574	70149574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	atatgccgaaccagaacgggGaacccgggcaccaaactccg	11	14	0	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	70149574	70149574	G	T	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	missense	c.274	p.P92T	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	73	0	0	62	24	27.91	-	-	-	T	70149574	G	T	70149574	3	4	800	1	0	0	0	0	1	0	0	0	14787	1174	41	2	1629	2	SLC7A3	23	70149574	Missense_Mutation	SNP	G	TCGA-E2-A1IH-01A-11D-A188-09	55278388	70149574	85120986	59	68077										
SMARCA1	0	genome.wustl.edu	37	chrX	128650475	128650475	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.288135593220339	17	8.76353207960604e-06	3.59035476718404	5.57560975609756	2.72720042417815	1	1	12	ctctttgctcggtcggctttCtaatttgcaaaacaaaagaa	7	9	2	1			TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	128650475	128650475	C	G	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	splice_site	c.262-1	e3-1	1.000	-	-	-	no_errors	SMARCA1	HGNC	ENSG00000102038	95	0	0	70	39	35.78	-	-	-	G	128650475	C	G	128650475	5	3	800	1	0	0	0	0	0	0	1	0	14857	927	32	2	2991	2	SMARCA1	23	128650475	Splice_Site	SNP	C	TCGA-E2-A1IH-01A-11D-A188-09	58500901	128650475	26620085	60	68078										
AJAP1	0	genome.wustl.edu	37	chr1	4772583	4772585	+	In_Frame_Del	DEL	CCA	CCA	-													0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	acggaagacaactgtggccgCcaccaccaccaccaccacca							TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	1	4772583	4772585	CCA	-	DEL	AJAP1	ENST00000378190	human	ensembl	69_37n	1	known	in_frame_del	c.653_655	p.T222in_frame_del	0.919:0.855:0.873	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	13	0	0	11	3	21.43	-	-	-	-	4772585	CCA	-	4772583	7	5	801	1	0	1	0	1	0	0	0	0	438	739	26	0	659	0	AJAP1	1	4772583	In_Frame_Del	DEL	CCA	TCGA-E2-A1II-01A-11D-A142-09		4772583	244478038	1	68079										
BCL2L11	0	genome.wustl.edu	37	chr2	111886207	111886207	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ttttttttttttaacagtagTcatcctagaggatataggtg	8	4	1	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	2	111886207	111886207	T	A	SNP	BCL2L11	ENST00000337565	human	ensembl	69_37n	1	known	missense	c.218	p.V73D	0.007	NULL	pfam_Apoptosis_Bim_N	-	no_errors	BCL2L11	HGNC	ENSG00000153094	41	0	0	45	8	15.09	-	-	-	A	111886207	T	A	111886207	3	1	801	1	0	0	0	0	1	0	0	0	1373	1667	58	5	404	5	BCL2L11	2	111886207	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09		111886207	131313166	2	68080										
HGFAC	0	genome.wustl.edu	37	chr4	3446056	3446056	+	Frame_Shift_Del	DEL	C	C	-													0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	agagaaatgctttgatgagaCccgctacgagtacctggagg							TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	4	3446056	3446056	C	-	DEL	HGFAC	ENST00000382774	human	ensembl	69_37n	1	known	frame_shift_del	c.617	p.R207fs	0.602	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	HGFAC	HGNC	ENSG00000109758	19	0	0	4	2	33.33	-	-	-	-	3446056	C	-	3446056	7	5	801	1	0	1	0	1	0	0	0	0	7137	507	18	0	639	0	HGFAC	4	3446056	Frame_Shift_Del	DEL	C	TCGA-E2-A1II-01A-11D-A142-09		3446056	187708220	3	68081										
PCDH10	0	genome.wustl.edu	37	chr4	134073920	134073920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	tccaacggaagcattttgtcCaacgaggtaaggctgaagcg	12	9	0	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	4	134073920	134073920	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.2625	p.S875	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	47	0	0	35	12	25	-	-	-	T	134073920	C	T	134073920	2	4	801	1	0	0	0	0	0	0	0	1	11580	581	21	4		4	PCDH10	4	134073920	Silent	SNP	C	TCGA-E2-A1II-01A-11D-A142-09	130627864	134073920	57080356	4	68082										
MAML1	0	genome.wustl.edu	37	chr5	179200977	179200977	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	agtgttccctcaggctgggaAtctgatgccaatgggccctg	13	11	2	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	5	179200977	179200977	A	T	SNP	MAML1	ENST00000292599	human	ensembl	69_37n	1	known	missense	c.2150	p.N717I	0.108	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	27	0	0	12	8	40	-	-	-	T	179200977	A	T	179200977	3	4	801	1	0	0	0	0	1	0	0	0	9276	101	4	5	2168	5	MAML1	5	179200977	Missense_Mutation	SNP	A	TCGA-E2-A1II-01A-11D-A142-09		179200977	1714283	5	68083										
ZNF292	0	genome.wustl.edu	37	chr6	87965080	87965080	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ccccatatgtgcaaagaactTtaattctaaagaaacttttg	5	8	1	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	6	87965080	87965080	T	G	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.1733	p.F578C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	40	0	0	42	14	25	-	-	-	G	87965080	T	G	87965080	3	3	801	1	0	0	0	0	1	0	0	0	17922	1841	64	5	1763	5	ZNF292	6	87965080	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09		87965080	83149987	6	68084										
NMBR	0	genome.wustl.edu	37	chr6	142396871	142396871	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	agcattgcttttcagagatgTcatacgcaccgctgaagagc	10	10	2	3			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	6	142396871	142396871	T	A	SNP	NMBR	ENST00000258042	human	ensembl	69_37n	-1	known	missense	c.1087	p.T363S	1.000	prints_NeuroB_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMBR	HGNC	ENSG00000135577	20	0	0	27	9	25	-	-	-	A	142396871	T	A	142396871	3	1	801	1	0	0	0	0	1	0	0	0	10559	1667	58	5	89	5	NMBR	6	142396871	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09	54431791	142396871	28718196	7	68085										
TMEM181	0	genome.wustl.edu	37	chr6	159029468	159029468	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	gccctgctgctcttctggctGtgcgtgtaccacgggattcg	13	13	2	0			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	6	159029468	159029468	G	C	SNP	TMEM181	ENST00000367090	human	ensembl	69_37n	1	known	silent	c.1188	p.L396	1.000	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433	56	0	0	62	14	18.42	-	-	-	C	159029468	G	C	159029468	2	2	801	1	0	0	0	0	0	0	0	1	16195	1364	48	4		4	TMEM181	6	159029468	Silent	SNP	G	TCGA-E2-A1II-01A-11D-A142-09	16632597	159029468	12085599	8	68086										
WHSC1L1	0	genome.wustl.edu	37	chr8	38162915	38162915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	cacaagcaccaacagaacaaCgcttcacatctttaccagac	4	15	2	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	8	38162915	38162915	C	T	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	missense	c.2291	p.R764H	1.000	smart_Znf_PHD	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	45	0	0	69	9	11.54	-	-	-	T	38162915	C	T	38162915	3	4	801	1	0	0	0	0	1	0	0	0	17460	536	19	1	2070	1	WHSC1L1	8	38162915	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09		38162915	108201107	9	68087										
UBR5	0	genome.wustl.edu	37	chr8	103297830	103297830	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	atacttaggaataaggcccaTcaagtccgagatttgtctaa	8	8	2	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	8	103297830	103297830	T	C	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.5395	p.M1799V	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	34	0	0	37	8	17.39	-	-	-	C	103297830	T	C	103297830	3	2	801	1	0	0	0	0	1	0	0	0	17002	1435	50	5	3088	5	UBR5	8	103297830	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09	65134915	103297830	43066192	10	68088										
PLAA	0	genome.wustl.edu	37	chr9	26907965	26907965	+	Frame_Shift_Del	DEL	A	A	-													0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	tcagttaacttcttctcttcAggtgcagttccattaagttc							TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	9	26907965	26907965	A	-	DEL	PLAA	ENST00000397292	human	ensembl	69_37n	-1	known	frame_shift_del	c.1689	p.E564fs	0.999	pfam_PUL,superfamily_ARM-type_fold	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055	42	0	0	50	22	29.73	-	-	-	-	26907965	A	-	26907965	7	5	801	1	0	1	0	1	0	0	0	0	12085	175	7	0	706	0	PLAA	9	26907965	Frame_Shift_Del	DEL	A	TCGA-E2-A1II-01A-11D-A142-09		26907965	114305466	11	68089										
TMBIM6	0	genome.wustl.edu	37	chr12	50136033	50136033	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ccaggcccacggggcggcccCgctcttttcggattggttac	13	15	1	0			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	12	50136033	50136033	C	G	SNP	TMBIM6	ENST00000423828	human	ensembl	69_37n	1	known	silent	c.114	p.P38	0.015	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM6	HGNC	ENSG00000139644	12	0	0	22	7	24.14	-	-	-	G	50136033	C	G	50136033	2	3	801	1	0	0	0	0	0	0	0	1	16078	639	23	3		3	TMBIM6	12	50136033	Silent	SNP	C	TCGA-E2-A1II-01A-11D-A142-09		50136033	83715862	12	68090										
IGFBP6	0	genome.wustl.edu	37	chr12	53494525	53494525	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	agaatcctaaggagagtaaaCcccaagcaggcactgcccgc	10	13	0	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	12	53494525	53494525	C	A	SNP	IGFBP6	ENST00000301464	human	ensembl	69_37n	1	known	missense	c.364	p.P122T	0.784	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-6	-	no_errors	IGFBP6	HGNC	ENSG00000167779	18	0	0	19	8	29.63	-	-	-	A	53494525	C	A	53494525	3	1	801	1	0	0	0	0	1	0	0	0	7637	507	18	4	370	4	IGFBP6	12	53494525	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09	3358492	53494525	80357370	13	68091										
CSPG4	0	genome.wustl.edu	37	chr15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	aagccaggctgtgcccccctCggccaccaccagtgggctga	12	17	0	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	15	75982085	75982085	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.1321	p.E441K	0.996	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	9	0	0	2	3	60	-	-	-	T	75982085	C	T	75982085	3	4	801	1	0	0	0	0	1	0	0	0	3992	893	31	1	5679	1	CSPG4	15	75982085	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09		75982085	26549307	14	68092										
TP53	0	genome.wustl.edu	37	chr17	7578556	7578556	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	tgttgagggcaggggagtacTgtaggaagaggaaggagaca	19	3	0	3			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	17	7578556	7578556	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.376-2	e4-2	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	25	0	0	17	7	29.17	-	-	-	G	7578556	T	G	7578556	5	3	801	1	0	0	0	0	0	0	1	0	16477	1594	55	5	924	5	TP53	17	7578556	Splice_Site	SNP	T	TCGA-E2-A1II-01A-11D-A142-09		7578556	73616654	15	68093										
DCC	0	genome.wustl.edu	37	chr18	50278619	50278619	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	gcagcaactttcaaatgggtCtctgctgatacaaaacatac	7	10	2	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	18	50278619	50278619	C	G	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.287	p.S96C	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	44	0	0	34	5	12.82	-	-	-	G	50278619	C	G	50278619	3	3	801	1	0	0	0	0	1	0	0	0	4313	913	32	2	293	2	DCC	18	50278619	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09		50278619	27798629	16	68094										
SLC5A5	0	genome.wustl.edu	37	chr19	17986867	17986867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	catgcttgtgggcgggccccGccaggtgctcacgctggccc	15	16	1	0			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	19	17986867	17986867	G	A	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	missense	c.650	p.R217H	0.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	64	0	0	97	25	20.49	-	-	-	A	17986867	G	A	17986867	3	1	801	1	0	0	0	0	1	0	0	0	14757	1087	38	1	668	1	SLC5A5	19	17986867	Missense_Mutation	SNP	G	TCGA-E2-A1II-01A-11D-A142-09		17986867	41142116	17	68095										
GRIK5	0	genome.wustl.edu	37	chr19	42569462	42569462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ggctgggacctcgatgatccCgttgatctgctcccgggcca	13	14	1	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	19	42569462	42569462	C	T	SNP	GRIK5	ENST00000301218	human	ensembl	69_37n	-1	known	missense	c.157	p.G53R	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737	11	0	0	15	9	37.5	-	-	-	T	42569462	C	T	42569462	3	4	801	1	0	0	0	0	1	0	0	0	6828	652	23	1	2857	1	GRIK5	19	42569462	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09	24582595	42569462	16559521	18	68096										
PLCG1	0	genome.wustl.edu	37	chr20	39798164	39798164	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ggatgtgccggcttgtcagaTtggtgagctcccatctgttt	13	9	2	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	20	39798164	39798164	T	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	missense	c.2648	p.I883N	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_Pleckstrin_homology,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	60	0	0	77	24	23.76	-	-	-	A	39798164	T	A	39798164	3	1	801	1	0	0	0	0	1	0	0	0	12109	1493	52	5	2738	5	PLCG1	20	39798164	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09		39798164	23227356	19	68097										
GTPBP5	0	genome.wustl.edu	37	chr20	60772932	60772932	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	ccagcaagtcaagtccctgtCgtcggtcctgtcgcggtacc	11	15	1	0			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	20	60772932	60772932	C	G	SNP	GTPBP5	ENST00000370823	human	ensembl	69_37n	1	known	missense	c.377	p.S126W	0.958	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,tigrfam_GTP-bd_Obg/CgtA	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP5	HGNC	ENSG00000101181	28	0	0	45	10	18.18	-	-	-	G	60772932	C	G	60772932	3	3	801	1	0	0	0	0	1	0	0	0	6934	893	31	3	387	3	GTPBP5	20	60772932	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09	20974768	60772932	2252588	20	68098										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29935696	29935696	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	gatctggatgaaaatcgagtTtgggaaagtgacattaggta	13	3	1	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	29935696	29935696	T	G	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	silent	c.894	p.V298	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	21	0	0	31	6	16.22	-	-	-	G	29935696	T	G	29935696	2	3	801	1	0	0	0	0	0	0	0	1	7715	1828	64	5		5	IL1RAPL1	23	29935696	Silent	SNP	T	TCGA-E2-A1II-01A-11D-A142-09		29935696	125334864	21	68099										
SHROOM4	0	genome.wustl.edu	37	chrX	50377007	50377007	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	aagaggactggccaggcctcTggccagggcttattcgtccc	13	13	1	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	50377007	50377007	T	G	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.2066	p.Q689P	0.536	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	28	0	0	33	8	19.51	-	-	-	G	50377007	T	G	50377007	3	3	801	1	0	0	0	0	1	0	0	0	14385	1580	55	5	2439	5	SHROOM4	23	50377007	Missense_Mutation	SNP	T	TCGA-E2-A1II-01A-11D-A142-09	20441311	50377007	104893553	22	68100										
HUWE1	0	genome.wustl.edu	37	chrX	53562452	53562452	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	cacgaacttcacaaactccaAactcttggacctagaacaac	4	14	2	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	53562452	53562452	A	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12542	p.F4181C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	51	0	0	73	22	23.16	-	-	-	C	53562452	A	C	53562452	3	2	801	1	0	0	0	0	1	0	0	0	7515	14	1	5	598	5	HUWE1	23	53562452	Missense_Mutation	SNP	A	TCGA-E2-A1II-01A-11D-A142-09	3185445	53562452	101708108	23	68101										
FAAH2	0	genome.wustl.edu	37	chrX	57358083	57358083	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	cgtgatgccattgccaaaacAgatgccactgtggtggcatt	11	10	0	2			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	57358083	57358083	A	G	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	1	known	silent	c.465	p.T155	0.766	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591	38	0	0	43	15	25.86	-	-	-	G	57358083	A	G	57358083	2	3	801	1	0	0	0	0	0	0	0	1	5394	175	7	5		5	FAAH2	23	57358083	Silent	SNP	A	TCGA-E2-A1II-01A-11D-A142-09	3795631	57358083	97912477	24	68102										
PCDH19	0	genome.wustl.edu	37	chrX	99662058	99662058	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	atcgcagcgcgtagatgtcgCctgagttgggattgatggag	16	7	0	3			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	99662058	99662058	C	G	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.1538	p.G513A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	29	0	0	40	7	14.89	-	-	-	G	99662058	C	G	99662058	3	3	801	1	0	0	0	0	1	0	0	0	11587	739	26	4	1932	4	PCDH19	23	99662058	Missense_Mutation	SNP	C	TCGA-E2-A1II-01A-11D-A142-09	42303975	99662058	55608502	25	68103										
ZNF275	0	genome.wustl.edu	37	chrX	152612458	152612458	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.965830697851541	0.79585326953748	1.75087719298246	0	1	1	0	catcattttgcttgtaaagaGtgtggggacacctttcggct	11	8	1	1			TCGA-E2-A1II-01A-11D-A142-09	TCGA-E2-A1II-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	698c8a73-c6b6-45bd-82fc-9bd0f140729d	22909312-dbd6-43ff-b741-78400439c1b6	X	152612458	152612458	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	1	known	silent	c.405	p.E135	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	42	0	0	48	7	12.5	-	-	-	A	152612458	G	A	152612458	2	1	801	1	0	0	0	0	0	0	0	1	17906	1020	36	4		4	ZNF275	23	152612458	Silent	SNP	G	TCGA-E2-A1II-01A-11D-A142-09	52950400	152612458	2658102	26	68104										
FAM153A	0	genome.wustl.edu	37	chr5	177171957	177171957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccgtagtcgccgtagttgccGtttcatctcaactaggagga	11	11	2	0			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	5	177171957	177171957	G	A	SNP	FAM153A	ENST00000360669	human	ensembl	69_37n	-1	known	missense	c.40	p.R14W	0.012	prints_FAM153	prints_FAM153	-	no_errors	FAM153A	HGNC	ENSG00000170074	47	0	0	30	5	14.29	-	-	-	A	177171957	G	A	177171957	3	1	802	1	0	0	0	0	1	0	0	0	5500	1144	40	1	960	1	FAM153A	5	177171957	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		177171957	3743303	1	68105										
HSP90AB1	0	genome.wustl.edu	37	chr6	44219526	44219526	+	Missense_Mutation	SNP	G	G	T													0	0	1	0	NA	0	1	1	0	ccgcctgtctgagctgctgcGctatcatacctcccagtctg							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	44219526	44219526	G	T	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	missense	c.1367	p.R456L	1.000	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	52	0	0	52	11	17.46	-	-	-	T	44219526	G	T	44219526	3	4	802	1	0	0	0	0	1	0	0	0	7455	1087	38	3	1397	3	HSP90AB1	6	44219526	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		44219526	126895541	2	68106	488	2								
HSP90AB1	0	genome.wustl.edu	37	chr6	44219527	44219527	+	Missense_Mutation	SNP	C	C	T													0	0	1	0	NA	0	1	1	0	cgcctgtctgagctgctgcgCtatcatacctcccagtctgg							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	44219527	44219527	C	T	SNP	HSP90AB1	ENST00000435812	human	ensembl	69_37n	1	known	missense	c.245	p.A82V	0.997	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HSP90AB1	HGNC	ENSG00000096384	53	0	0	52	10	16.13	-	-	-	T	44219527	C	T	44219527	3	4	802	1	0	0	0	0	1	0	0	0	7455	784	28	4	1398	4	HSP90AB1	6	44219527	Missense_Mutation	SNP	C	TCGA-E2-A1IJ-01A-11D-A142-09	1	44219527	126895540	3	68107	488	2								
C6orf57	0	genome.wustl.edu	37	chr6	71298411	71298411	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agattgggaacgaaaaggacGctgtattgatttttaagtcg	12	4	0	2			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	71298411	71298411	G	T	SNP	C6orf57	ENST00000370474	human	ensembl	69_37n	1	known	missense	c.311	p.R104L	1.000	pfam_DUF1674	pfam_DUF1674	-	no_errors	C6orf57	HGNC	ENSG00000154079	28	0	0	27	4	12.9	-	-	-	T	71298411	G	T	71298411	3	4	802	1	0	0	0	0	1	0	0	0	2388	1087	38	3	321	3	C6orf57	6	71298411	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09	27078884	71298411	99816656	4	68108										
GPNMB	0	genome.wustl.edu	37	chr7	23309653	23309653	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcacccagaacacagtctgcAgccctgtggatgtggatgag	12	11	2	2			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	23309653	23309653	A	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	missense	c.1324	p.S442R	0.036	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	33	0	0	36	21	36.84	-	-	-	C	23309653	A	C	23309653	3	2	802	1	0	0	0	0	1	0	0	0	6670	188	7	5	1358	5	GPNMB	7	23309653	Missense_Mutation	SNP	A	TCGA-E2-A1IJ-01A-11D-A142-09		23309653	135829010	5	68109										
TAS2R38	0	genome.wustl.edu	37	chr7	141672880	141672880	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagaaacaataggaaaggagGcacagaccacagatagcaga	11	8	0	4			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	141672880	141672880	G	T	SNP	TAS2R38	ENST00000547270	human	ensembl	69_37n	-1	known	missense	c.610	p.P204T	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138	43	0	0	24	4	14.29	-	-	-	T	141672880	G	T	141672880	3	4	802	1	0	0	0	0	1	0	0	0	15667	1203	42	4	395	4	TAS2R38	7	141672880	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09	118363227	141672880	17465783	6	68110										
PAXIP1	0	genome.wustl.edu	37	chr7	154767672	154767672	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	tgcagctaactgtgggacttCggccggggtccagtttaaat							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	154767672	154767672	C	-	DEL	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	frame_shift_del	c.808	p.E270fs	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	56	0	0	49	10	16.39	-	-	-	-	154767672	C	-	154767672	7	5	802	1	0	1	0	1	0	0	0	0	11560	893	31	0	2465	0	PAXIP1	7	154767672	Frame_Shift_Del	DEL	C	TCGA-E2-A1IJ-01A-11D-A142-09	13094792	154767672	4370991	7	68111										
GSR	0	genome.wustl.edu	37	chr8	30557645	30557645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccatcgctggttattcctaaGctggcacctatgtagaaaaa	8	10	0	1			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	8	30557645	30557645	G	A	SNP	GSR	ENST00000520888	human	ensembl	69_37n	-1	novel	missense	c.514	p.L172F	0.754	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase	-	pseudogene:no_stop_codon	GSR	HGNC	ENSG00000104687	45	0	0	35	5	12.5	-	-	-	A	30557645	G	A	30557645	3	1	802	1	0	0	0	0	1	0	0	0	6879	962	34	4	952	4	GSR	8	30557645	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		30557645	115806377	8	68112										
NUP214	0	genome.wustl.edu	37	chr9	134027158	134027158	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ataagtagcctgaaaacaacTttacttgagggctttgctgg	10	7	0	2			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	9	134027158	134027158	T	G	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	silent	c.2316	p.T772	0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	75	0	0	58	14	19.44	-	-	-	G	134027158	T	G	134027158	2	3	802	1	0	0	0	0	0	0	0	1	10835	1596	56	5		5	NUP214	9	134027158	Silent	SNP	T	TCGA-E2-A1IJ-01A-11D-A142-09		134027158	7186273	9	68113										
OPN4	0	genome.wustl.edu	37	chr10	88421081	88421081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	acatgagctcggtgccagccGtcatcgccaaggcctctgca	11	15	2	1			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	10	88421081	88421081	G	A	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	1	known	missense	c.1042	p.V348I	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	44	0	0	26	5	16.13	-	-	-	A	88421081	G	A	88421081	3	1	802	1	0	0	0	0	1	0	0	0	10955	1145	40	1	1072	1	OPN4	10	88421081	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		88421081	47113666	10	68114										
ATM	0	genome.wustl.edu	37	chr11	108098605	108098605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaaatatttgaattgggatGctgtttttaggtattctatt	9	2	1	1			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	11	108098605	108098605	G	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.175	p.A59S	1.000	pfam_TAN	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	44	0	0	33	4	10.81	-	-	-	T	108098605	G	T	108098605	3	4	802	1	0	0	0	0	1	0	0	0	1113	1319	46	4	181	4	ATM	11	108098605	Missense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		108098605	26907911	11	68115										
TBX5	0	genome.wustl.edu	37	chr12	114793417	114793417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aggggatagagtccttggcaCgccatgagagtagaggaact	15	7	0	3			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	12	114793417	114793417	C	T	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.1477	p.V493M	0.986	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	19	0	0	15	8	34.78	-	-	-	T	114793417	C	T	114793417	3	4	802	1	0	0	0	0	1	0	0	0	15756	536	19	1	83	1	TBX5	12	114793417	Missense_Mutation	SNP	C	TCGA-E2-A1IJ-01A-11D-A142-09		114793417	19058478	12	68116										
TBX3	0	genome.wustl.edu	37	chr12	115115446	115115446	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	NA	0	1	1	0	tgcaaaagggttgttgtctaTttttaactgggttatctatt							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	12	115115446	115115446	T	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.880	p.I294fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	66	0	0	37	9	19.57	-	-	-	-	115115446	T	-	115115446	7	5	802	1	0	1	0	1	0	0	0	0	15754	1493	52	0	1367	0	TBX3	12	115115446	Frame_Shift_Del	DEL	T	TCGA-E2-A1IJ-01A-11D-A142-09	322029	115115446	18736449	13	68117										
TSC22D1	0	genome.wustl.edu	37	chr13	45010182	45010182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tttttcatcagtacataccaTagcttgctcgattttgttgt	6	8	2	0			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	13	45010182	45010182	T	C	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.2962	p.M988V	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	87	0	0	39	10	20.41	-	-	-	C	45010182	T	C	45010182	3	2	802	1	0	0	0	0	1	0	0	0	16703	1406	49	5	267	5	TSC22D1	13	45010182	Missense_Mutation	SNP	T	TCGA-E2-A1IJ-01A-11D-A142-09		45010182	70159696	14	68118										
CDH1	0	genome.wustl.edu	37	chr16	68857397	68857398	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	NA	0	1	1	0	taaccagaataaagaccaagINStgaccaccttagaggtcagc							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	16	68857397	68857398	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.2032_2033	p.T679fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	38	0	0	20	7	25.93	-	-	-	T	68857398	-	T	68857397	7	5	802	1	0	1	1	0	0	0	0	0	3124	1029	36	0	2082	0	CDH1	16	68857397	Frame_Shift_Ins	INS	-	TCGA-E2-A1IJ-01A-11D-A142-09		68857397	21497356	15	68119										
TNRC6C	0	genome.wustl.edu	37	chr17	76089144	76089144	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtagctgttccccatagctgGtcacgtgccaaatctgacag	10	12	2	1			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	17	76089144	76089144	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	nonsense	c.4092	p.W1364*	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	59	0	0	35	11	23.91	-	-	-	A	76089144	G	A	76089144	4	1	802	1	0	0	0	0	0	1	0	0	16437	1270	44	4	4151	4	TNRC6C	17	76089144	Nonsense_Mutation	SNP	G	TCGA-E2-A1IJ-01A-11D-A142-09		76089144	5106066	16	68120										
ZNF761	0	genome.wustl.edu	37	chr19	53959457	53959457	+	RNA	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	tcaatcagcagttaacccttAaacgccatcgtagacttcat							TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	19	53959457	53959457	A	-	DEL	ZNF761	ENST00000334095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	54	0	0	17	2	10.53	-	-	-	-	53959457	A	-	53959457	6	5	802	0	1	1	0	1	0	0	0	0	18230	363	13	0		0	ZNF761	19	53959457	RNA	DEL	A	TCGA-E2-A1IJ-01A-11D-A142-09		53959457	5169526	17	68121										
SLC9A1	0	genome.wustl.edu	37	chr1	27427750	27427750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ccagcttgtgggctggcaccGtcaggtagttgttgatctga	14	9	2	2			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	27427750	27427750	G	T	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	missense	c.2054	p.T685K	1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	31	0	0	31	4	11.43	-	-	-	T	27427750	G	T	27427750	3	4	803	1	0	0	0	0	1	0	0	0	14798	1145	40	3	401	3	SLC9A1	1	27427750	Missense_Mutation	SNP	G	TCGA-E2-A1IK-01A-11D-A17G-09		27427750	221822871	1	68122										
PTP4A2	0	genome.wustl.edu	37	chr1	32384627	32384627	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	gtgagttatcagaaaacgcaTgttctcataggagatctcca	9	8	3	3			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	32384627	32384627	T	A	SNP	PTP4A2	ENST00000344035	human	ensembl	69_37n	-1	known	missense	c.40	p.M14L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTP4A2	HGNC	ENSG00000184007	95	0	0	152	48	24	-	-	-	A	32384627	T	A	32384627	3	1	803	1	0	0	0	0	1	0	0	0	12852	1464	51	5	483	5	PTP4A2	1	32384627	Missense_Mutation	SNP	T	TCGA-E2-A1IK-01A-11D-A17G-09	4956877	32384627	216865994	2	68123										
MACF1	0	genome.wustl.edu	37	chr1	39798985	39798985	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ggctaaggatgaccataaagAaagtcaagaagcacagaaca	10	7	1	4			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	39798985	39798985	A	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.6836	p.E2279G	0.234	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	36	0	0	52	19	26.76	-	-	-	G	39798985	A	G	39798985	3	3	803	1	0	0	0	0	1	0	0	0	9211	246	9	5	6816	5	MACF1	1	39798985	Missense_Mutation	SNP	A	TCGA-E2-A1IK-01A-11D-A17G-09	7414358	39798985	209451636	3	68124										
NR2C2	0	genome.wustl.edu	37	chr3	15094988	15094988	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ccagaatctggaaacggaaaGcacggggcagaagagaaaca	13	8	1	3			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	15094988	15094988	G	C	SNP	NR2C2	ENST00000439011	human	ensembl	69_37n	1	putative	missense	c.579	p.K193N	0.001	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_start_codon	NR2C2	HGNC	ENSG00000177463	73	0	0	114	32	21.77	-	-	-	C	15094988	G	C	15094988	3	2	803	1	0	0	0	0	1	0	0	0	10696	986	34	4		4	NR2C2	3	15094988	Missense_Mutation	SNP	G	TCGA-E2-A1IK-01A-11D-A17G-09		15094988	182927442	4	68125										
SETD2	0	genome.wustl.edu	37	chr3	47058736	47058737	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	gctccttattcataacaccgINStgagtcagctgtccagggca							TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	47058736	47058737	-	T	INS	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7542_7541	p.H2514fs	0.914:1.000	pfam_SRI	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	131	0	0	179	20	10.05	-	-	-	T	47058737	-	T	47058736	7	5	803	1	0	1	1	0	0	0	0	0	14219	1136	40	0	156	0	SETD2	3	47058736	Frame_Shift_Ins	INS	-	TCGA-E2-A1IK-01A-11D-A17G-09	31963748	47058736	150963694	5	68126										
ZDHHC11	0	genome.wustl.edu	37	chr5	843815	843815	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	cagagcatgccagctgtggcCgaggccacagtgctgaagaa	14	11	0	3			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	5	843815	843815	C	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	silent	c.528	p.S176	0.590	pfam_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	15	0	0	34	12	26.09	-	-	-	T	843815	C	T	843815	2	4	803	1	0	0	0	0	0	0	0	1	17697	639	23	1		1	ZDHHC11	5	843815	Silent	SNP	C	TCGA-E2-A1IK-01A-11D-A17G-09		843815	180071445	6	68127										
RASGEF1A	0	genome.wustl.edu	37	chr10	43696327	43696327	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ggcaatggccttcttcactgTgccattctcctgtggggtca	11	12	4	0			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	10	43696327	43696327	T	A	SNP	RASGEF1A	ENST00000395809	human	ensembl	69_37n	-1	known	missense	c.469	p.T157S	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915	49	0	0	70	17	19.54	-	-	-	A	43696327	T	A	43696327	3	1	803	1	0	0	0	0	1	0	0	0	13152	1696	59	5	1012	5	RASGEF1A	10	43696327	Missense_Mutation	SNP	T	TCGA-E2-A1IK-01A-11D-A17G-09		43696327	91838420	7	68128										
PIK3C2G	0	genome.wustl.edu	37	chr12	18443835	18443835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	atgttaatttcaattctgggAagatctggagcactactaca	8	7	3	1			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	12	18443835	18443835	A	C	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	1	known	missense	c.808	p.K270Q	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	79	0	0	128	30	18.87	-	-	-	C	18443835	A	C	18443835	3	2	803	1	0	0	0	0	1	0	0	0	11985	247	9	5	818	5	PIK3C2G	12	18443835	Missense_Mutation	SNP	A	TCGA-E2-A1IK-01A-11D-A17G-09		18443835	115408060	8	68129										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84506850	84506850	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	tctgttggcaggcagtgggcTgcgatcggcaactgggaagc	17	9	1	0			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	15	84506850	84506850	T	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.610	p.C204S	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	20	0	0	24	10	29.41	-	-	-	A	84506850	T	A	84506850	3	1	803	1	0	0	0	0	1	0	0	0	276	1580	55	5	632	5	ADAMTSL3	15	84506850	Missense_Mutation	SNP	T	TCGA-E2-A1IK-01A-11D-A17G-09		84506850	18024542	9	68130										
CLEC16A	0	genome.wustl.edu	37	chr16	11154805	11154805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ttccctgtcactgcaattgcGaggggagcctgagacacagt	12	11	1	1			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	11154805	11154805	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	missense	c.2042	p.R681Q	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	49	0	0	104	27	20.45	-	-	-	A	11154805	G	A	11154805	3	1	803	1	0	0	0	0	1	0	0	0	3530	1058	37	1	2112	1	CLEC16A	16	11154805	Missense_Mutation	SNP	G	TCGA-E2-A1IK-01A-11D-A17G-09		11154805	79199948	10	68131										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53706824	53706824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	aacttcatagaatgtaattgTttctcaagactgcagcattt	6	7	2	2			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	53706824	53706824	T	C	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	silent	c.987	p.K329	0.921	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	78	0	0	82	21	20.39	-	-	-	C	53706824	T	C	53706824	2	2	803	1	0	0	0	0	0	0	0	1	13636	1722	60	5		5	RPGRIP1L	16	53706824	Silent	SNP	T	TCGA-E2-A1IK-01A-11D-A17G-09	42552019	53706824	36647929	11	68132										
HSF4	0	genome.wustl.edu	37	chr16	67201760	67201760	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	gcctgtggctgtggtgcaggCcatcctggaagggaaaggga							TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	67201760	67201760	C	-	DEL	HSF4	ENST00000264009	human	ensembl	69_37n	1	known	frame_shift_del	c.992	p.I332fs	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878	15	0	0	28	9	24.32	-	-	-	-	67201760	C	-	67201760	7	5	803	1	0	1	0	1	0	0	0	0	7449	739	26	0	1040	0	HSF4	16	67201760	Frame_Shift_Del	DEL	C	TCGA-E2-A1IK-01A-11D-A17G-09	13494936	67201760	23152993	12	68133										
CMIP	0	genome.wustl.edu	37	chr16	81737574	81737574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	tggctcgtttgctgagctccGgctccttcggaaacctggag	13	12	0	1			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	81737574	81737574	G	T	SNP	CMIP	ENST00000537098	human	ensembl	69_37n	1	known	missense	c.1975	p.G659C	0.998	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815	27	0	0	31	16	34.04	-	-	-	T	81737574	G	T	81737574	3	4	803	1	0	0	0	0	1	0	0	0	3608	1116	39	3	2067	3	CMIP	16	81737574	Missense_Mutation	SNP	G	TCGA-E2-A1IK-01A-11D-A17G-09	14535814	81737574	8617179	13	68134										
DGCR14	0	genome.wustl.edu	37	chr22	19127488	19127488	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	1	0.843743695016429	1.54878048780488	3.09756097560976	0	1	1	0	ctcgtgtagcggctcaggaaGacatctaggctgggcagcgg	16	10	2	1			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	22	19127488	19127488	G	C	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	silent	c.450	p.V150	0.997	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	29	0	0	48	17	26.15	-	-	-	C	19127488	G	C	19127488	2	2	803	1	0	0	0	0	0	0	0	1	4496	929	33	2		2	DGCR14	22	19127488	Silent	SNP	G	TCGA-E2-A1IK-01A-11D-A17G-09		19127488	32177078	14	68135										
ZNF281	0	genome.wustl.edu	37	chr1	200378731	200378732	+	In_Frame_Ins	INS	-	-	GCC													0	0	1	0	NA	0	1	1	0	tctgccctcctgccgctgctINSgccgccgccgccgccgccgc							TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	1	200378731	200378732	-	GCC	INS	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	in_frame_ins	c.103_102	p.34in_frame_insG	0.985:0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	10	0	0	4	2	33.33	-	-	-	GCC	200378732	-	GCC	200378731	7	5	804	1	0	1	1	0	0	0	0	0	17914	1580	55	0	2588	0	ZNF281	1	200378731	In_Frame_Ins	INS	-	TCGA-E2-A1IL-01A-11D-A14G-09		200378731	48871890	1	68136										
FMN2	0	genome.wustl.edu	37	chr1	240370352	240370352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ggcgaaatcgatacagacttCccccacggaagagggcgggg	15	11	0	2			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	1	240370352	240370352	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.2240	p.S747F	0.999	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	36	0	0	20	17	45.95	-	-	-	T	240370352	C	T	240370352	3	4	804	1	0	0	0	0	1	0	0	0	5996	855	30	2	2258	2	FMN2	1	240370352	Missense_Mutation	SNP	C	TCGA-E2-A1IL-01A-11D-A14G-09	39991621	240370352	8880269	2	68137										
PLEKHB2	0	genome.wustl.edu	37	chr2	131883435	131883435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atcgaggataaggtccacatGccaatggactgcatcaacat	9	10	1	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	2	131883435	131883435	G	A	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	1	known	missense	c.147	p.M49I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	45	0	0	36	16	30.77	-	-	-	A	131883435	G	A	131883435	3	1	804	1	0	0	0	0	1	0	0	0	12139	1319	46	4	153	4	PLEKHB2	2	131883435	Missense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		131883435	111315938	3	68138										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0	26	26	50	-	-	-	G	178952085	A	G	178952085	3	3	804	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1IL-01A-11D-A14G-09		178952085	19070345	4	68139										
ANKRD17	0	genome.wustl.edu	37	chr4	73942663	73942663	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgatcagcctcaccgtttgAgggccattattttccgtgga	10	10	2	2			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	4	73942663	73942663	A	C	SNP	ANKRD17	ENST00000558247	human	ensembl	69_37n	-1	known	missense	c.7397	p.L2466R	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKRD17	HGNC	ENSG00000132466	55	0	0	40	11	21.57	-	-	-	C	73942663	A	C	73942663	3	2	804	1	0	0	0	0	1	0	0	0	646	291	11	5	73	5	ANKRD17	4	73942663	Missense_Mutation	SNP	A	TCGA-E2-A1IL-01A-11D-A14G-09		73942663	117211613	5	68140										
SERPINB6	0	genome.wustl.edu	37	chr6	2955880	2955880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctggtggatgtctccaccacCgccacttttattgaaagaaa	8	11	1	2			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	2955880	2955880	C	T	SNP	SERPINB6	ENST00000335686	human	ensembl	69_37n	-1	known	missense	c.190	p.G64S	0.452	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570	38	0	0	37	14	27.45	-	-	-	T	2955880	C	T	2955880	3	4	804	1	0	0	0	0	1	0	0	0	14193	652	23	1	960	1	SERPINB6	6	2955880	Missense_Mutation	SNP	C	TCGA-E2-A1IL-01A-11D-A14G-09		2955880	168159187	6	68141										
TBCC	0	genome.wustl.edu	37	chr6	42712938	42712938	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctccgggtagctccaggtgtAaggggcgaactggatcccac	14	12	0	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	42712938	42712938	A	G	SNP	TBCC	ENST00000244625	human	ensembl	69_37n	-1	known	missense	c.874	p.Y292H	1.000	pfam_Tubulin-bd_cofactor_C	pfam_Tubulin-bd_cofactor_C,smart_CARP_motif	-	no_errors	TBCC	HGNC	ENSG00000124659	94	0	0	72	27	27.27	-	-	-	G	42712938	A	G	42712938	3	3	804	1	0	0	0	0	1	0	0	0	15726	362	13	5	170	5	TBCC	6	42712938	Missense_Mutation	SNP	A	TCGA-E2-A1IL-01A-11D-A14G-09	39757058	42712938	128402129	7	68142										
SYNE1	0	genome.wustl.edu	37	chr6	152751745	152751745	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tgtcaacttggctttaattcGagcagattctccagtggtaa	9	8	2	1			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	152751745	152751745	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.4561	p.R1521*	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	98	0	0	15	28	65.12	-	-	-	A	152751745	G	A	152751745	4	1	804	1	0	0	0	0	0	1	0	0	15537	1066	37	1	22353	1	SYNE1	6	152751745	Nonsense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09	110038807	152751745	18363322	8	68143										
NEUROD6	0	genome.wustl.edu	37	chr7	31378167	31378167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tttcatagaaggattcatacGcactgcaataattgtagggt	9	6	2	1			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	7	31378167	31378167	G	A	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.716	p.A239V	0.992	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	31	0	0	26	23	46.94	-	-	-	A	31378167	G	A	31378167	3	1	804	1	0	0	0	0	1	0	0	0	10423	1087	38	1	301	1	NEUROD6	7	31378167	Missense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		31378167	127760496	9	68144										
AVL9	0	genome.wustl.edu	37	chr7	32598971	32598971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccctcagagagtcttccaatTactgtacaacctcaagctaa	5	13	3	1			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	7	32598971	32598971	T	G	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	missense	c.1110	p.I370M	1.000	pfam_Secretory_pathway_prot_Avl9	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	13	0	0	9	6	40	-	-	-	G	32598971	T	G	32598971	3	3	804	1	0	0	0	0	1	0	0	0	1232	1742	61	5	1148	5	AVL9	7	32598971	Missense_Mutation	SNP	T	TCGA-E2-A1IL-01A-11D-A14G-09	1220804	32598971	126539692	10	68145										
SIT1	0	genome.wustl.edu	37	chr9	35649944	35649944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaggcatagagctccggctcGgggcccgaggcctgggactt	17	12	0	1			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	9	35649944	35649944	G	A	SNP	SIT1	ENST00000259608	human	ensembl	69_37n	-1	known	silent	c.492	p.P164	0.000	NULL	NULL	-	no_errors	SIT1	HGNC	ENSG00000137078	30	0	0	12	9	42.86	-	-	-	A	35649944	G	A	35649944	2	1	804	1	0	0	0	0	0	0	0	1	14433	1103	39	1		1	SIT1	9	35649944	Silent	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		35649944	105563487	11	68146										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57077320	57077320	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgtagtcccttatccaagcGctcttcccaaactcctgttc	5	16	1	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	11	57077320	57077320	G	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.2865	p.S955	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	63	0	0	34	25	41.67	-	-	-	A	57077320	G	A	57077320	2	1	804	1	0	0	0	0	0	0	0	1	16415	1078	38	1		1	TNKS1BP1	11	57077320	Silent	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		57077320	77929196	12	68147										
AGBL1	0	genome.wustl.edu	37	chr15	86768172	86768172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actgaagttttggcagcattGctgaaatccagtaagcacct	9	9	0	2			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	15	86768172	86768172	G	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.378	p.L126F	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	103	0	0	100	36	26.47	-	-	-	T	86768172	G	T	86768172	3	4	804	1	0	0	0	0	1	0	0	0	375	1310	46	4	392	4	AGBL1	15	86768172	Missense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		86768172	15763220	13	68148										
CNTD1	0	genome.wustl.edu	37	chr17	40956304	40956305	+	Frame_Shift_Del	DEL	AA	AA	-													0	0	1	0	NA	0	1	1	0	caatccagccaagagataatAagagagagtctcagaattgg							TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	17	40956304	40956305	AA	-	DEL	CNTD1	ENST00000588408	human	ensembl	69_37n	1	known	frame_shift_del	c.307_308	p.K103fs	0.061:0.074	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CNTD1	HGNC	ENSG00000176563	64	0	0	28	21	41.18	-	-	-	-	40956305	AA	-	40956304	7	5	804	1	0	1	0	1	0	0	0	0	3665	363	13	0	317	0	CNTD1	17	40956304	Frame_Shift_Del	DEL	AA	TCGA-E2-A1IL-01A-11D-A14G-09		40956304	40238906	14	68149										
ZNF846	0	genome.wustl.edu	37	chr19	9868344	9868345	+	Frame_Shift_Del	DEL	CG	CG	-													0	0	1	0	NA	0	1	1	0	gcttttctcctgtgtgcgttCgcatgtgcatattaagattt							TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	9868344	9868345	CG	-	DEL	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	frame_shift_del	c.1409_1408	p.R470fs	0.077:0.001	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	72	0	0	45	13	22.03	-	-	-	-	9868345	CG	-	9868344	7	5	804	1	0	1	0	1	0	0	0	0	18285	884	31	0	196	0	ZNF846	19	9868344	Frame_Shift_Del	DEL	CG	TCGA-E2-A1IL-01A-11D-A14G-09		9868344	49260639	15	68150										
PGPEP1	0	genome.wustl.edu	37	chr19	18474258	18474258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagagtcacggtcgatcagcCttcgtccacgtgcccccact	9	17	2	1			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	18474258	18474258	C	T	SNP	PGPEP1	ENST00000269919	human	ensembl	69_37n	1	known	silent	c.495	p.A165	0.964	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15,prints_Peptidase_C15	-	no_errors	PGPEP1	HGNC	ENSG00000130517	57	0	0	36	20	35.71	-	-	-	T	18474258	C	T	18474258	2	4	804	1	0	0	0	0	0	0	0	1	11877	668	24	4		4	PGPEP1	19	18474258	Silent	SNP	C	TCGA-E2-A1IL-01A-11D-A14G-09	8605914	18474258	40654725	16	68151										
PHLDB3	0	genome.wustl.edu	37	chr19	44005930	44005930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctgctccgaggccgcctgctGctccagcagctcccgcagct	11	19	0	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	44005930	44005930	G	T	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	missense	c.490	p.Q164K	0.972	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	12	0	0	12	4	25	-	-	-	T	44005930	G	T	44005930	3	4	804	1	0	0	0	0	1	0	0	0	11927	1328	46	4	1484	4	PHLDB3	19	44005930	Missense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09	25531672	44005930	15123053	17	68152										
ARFGEF2	0	genome.wustl.edu	37	chr20	47607613	47607613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	atgttcaggctcttgctcgcTtctccctactcacagccagc	7	16	4	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	20	47607613	47607613	T	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.2851	p.F951L	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	100	0	0	52	32	38.1	-	-	-	C	47607613	T	C	47607613	3	2	804	1	0	0	0	0	1	0	0	0	855	1609	56	5	2933	5	ARFGEF2	20	47607613	Missense_Mutation	SNP	T	TCGA-E2-A1IL-01A-11D-A14G-09		47607613	15417907	18	68153										
SOX3	0	genome.wustl.edu	37	chrX	139586876	139586876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctgccgccgcccgagttcGcgccgccggctgcgttcgca	14	18	0	0			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	X	139586876	139586876	G	T	SNP	SOX3	ENST00000370536	human	ensembl	69_37n	-1	known	missense	c.350	p.A117E	0.021	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX3	HGNC	ENSG00000134595	8	0	0	8	5	38.46	-	-	-	T	139586876	G	T	139586876	3	4	804	1	0	0	0	0	1	0	0	0	15040	1087	38	3	994	3	SOX3	23	139586876	Missense_Mutation	SNP	G	TCGA-E2-A1IL-01A-11D-A14G-09		139586876	15683684	19	68154										
UBE4B	0	genome.wustl.edu	37	chr1	10166258	10166258	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tttctcaactaatttagcctCtatgaaagtagtccggctcc	6	11	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	10166258	10166258	C	G	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	silent	c.813	p.L271	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	62	0	0	23	8	25.81	-	-	-	G	10166258	C	G	10166258	2	3	805	1	0	0	0	0	0	0	0	1	16980	900	32	2		2	UBE4B	1	10166258	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		10166258	239084363	1	68155										
C1orf127	0	genome.wustl.edu	37	chr1	11008331	11008331	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctggcgtggcctctccacctCcgttccagagcacgtttcct	9	17	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	11008331	11008331	C	G	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.1861	p.E621Q	0.002	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	34	0	0	16	10	38.46	-	-	-	G	11008331	C	G	11008331	3	3	805	1	0	0	0	0	1	0	0	0	2013	864	30	2	614	2	C1orf127	1	11008331	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	842073	11008331	238242290	2	68156										
C1orf127	0	genome.wustl.edu	37	chr1	11008427	11008427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccagggcctcgccaatggctGgaactcctcactggcttggc	12	15	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	11008427	11008427	G	T	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	missense	c.1765	p.Q589K	0.005	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	29	0	0	11	10	47.62	-	-	-	T	11008427	G	T	11008427	3	4	805	1	0	0	0	0	1	0	0	0	2013	1357	47	4	710	4	C1orf127	1	11008427	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	96	11008427	238242194	3	68157										
MTOR	0	genome.wustl.edu	37	chr1	11270881	11270881	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tatagttcaccttgacaattCtgcagatgagcacatcatag	7	9	3	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	11270881	11270881	C	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.3644	p.R1215T	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	76	0	0	43	12	21.82	-	-	-	G	11270881	C	G	11270881	3	3	805	1	0	0	0	0	1	0	0	0	10026	913	32	2	4145	2	MTOR	1	11270881	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	262454	11270881	237979740	4	68158										
SPATA21	0	genome.wustl.edu	37	chr1	16736350	16736350	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtcagggtcctgggcgacttCtgggctgtctgggaccgggc	18	11	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	16736350	16736350	C	G	SNP	SPATA21	ENST00000335496	human	ensembl	69_37n	-1	known	missense	c.333	p.Q111H	0.075	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SPATA21	HGNC	ENSG00000187144	46	0	0	26	12	31.58	-	-	-	G	16736350	C	G	16736350	3	3	805	1	0	0	0	0	1	0	0	0	15098	912	32	2	1108	2	SPATA21	1	16736350	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	5465469	16736350	232514271	5	68159										
BSDC1	0	genome.wustl.edu	37	chr1	32843862	32843862	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aataccgatgccagaattctGaatgggaaacagctgctgga	11	8	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	32843862	32843862	G	A	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	missense	c.602	p.S201L	0.988	pfam_BSD,smart_BSD,pfscan_BSD	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	76	0	0	42	31	41.89	-	-	-	A	32843862	G	A	32843862	3	1	805	1	0	0	0	0	1	0	0	0	1536	1294	45	2	761	2	BSDC1	1	32843862	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	16107512	32843862	216406759	6	68160										
RAVER2	0	genome.wustl.edu	37	chr1	65243506	65243506	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gaaatattgagagatgttttCtggtctatagtgaagttact	10	3	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	65243506	65243506	C	T	SNP	RAVER2	ENST00000294428	human	ensembl	69_37n	1	known	silent	c.517	p.L173	0.984	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER2	HGNC	ENSG00000162437	139	0	0	72	39	35.14	-	-	-	T	65243506	C	T	65243506	2	4	805	1	0	0	0	0	0	0	0	1	13178	912	32	2		2	RAVER2	1	65243506	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	32399644	65243506	184007115	7	68161										
PTGER3	0	genome.wustl.edu	37	chr1	71512883	71512883	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aaaaaggtgcagagccgcccCgacgggtcgatgtgctccca	13	13	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	71512883	71512883	C	T	SNP	PTGER3	ENST00000354608	human	ensembl	69_37n	-1	known	silent	c.378	p.S126	0.933	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	27	0	0	13	11	45.83	-	-	-	T	71512883	C	T	71512883	2	4	805	1	0	0	0	0	0	0	0	1	12825	639	23	1		1	PTGER3	1	71512883	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	6269377	71512883	177737738	8	68162										
CELSR2	0	genome.wustl.edu	37	chr1	109793212	109793212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aagagtccctgggtgggcgtCggaaaaggaatgtaaataca	14	6	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	109793212	109793212	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.511	p.R171W	0.997	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	63	0	0	25	25	50	-	-	-	T	109793212	C	T	109793212	3	4	805	1	0	0	0	0	1	0	0	0	3251	875	31	1	513	1	CELSR2	1	109793212	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	38280329	109793212	139457409	9	68163										
NRAS	0	genome.wustl.edu	37	chr1	115251203	115251203	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acaaccctgagtcccatcatCactgctgttgagttttttca	6	12	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	115251203	115251203	C	T	SNP	NRAS	ENST00000369535	human	ensembl	69_37n	-1	known	missense	c.523	p.D175N	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NRAS	HGNC	ENSG00000213281	330	0	0	205	90	30.51	-	-	-	T	115251203	C	T	115251203	3	4	805	1	0	0	0	0	1	0	0	0	10713	826	29	2	50	2	NRAS	1	115251203	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	5457991	115251203	133999418	10	68164										
CD58	0	genome.wustl.edu	37	chr1	117078619	117078619	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tacaggttgtcaaaatgattGatgatgttgtattaaataat	8	2	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	117078619	117078619	G	A	SNP	CD58	ENST00000369489	human	ensembl	69_37n	-1	known	missense	c.596	p.S199L	0.001	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815	172	0	0	71	30	29.7	-	-	-	A	117078619	G	A	117078619	3	1	805	1	0	0	0	0	1	0	0	0	3054	1294	45	2	176	2	CD58	1	117078619	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1827416	117078619	132172002	11	68165										
CGN	0	genome.wustl.edu	37	chr1	151509297	151509297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cctgaggaagaaggcccagcGtgaggtggaggagcagcatg	18	8	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	151509297	151509297	G	A	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.3398	p.R1133H	0.999	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	163	0	0	88	139	60.96	-	-	-	A	151509297	G	A	151509297	3	1	805	1	0	0	0	0	1	0	0	0	3332	1145	40	1	3472	1	CGN	1	151509297	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	34430678	151509297	97741324	12	68166										
PGLYRP3	0	genome.wustl.edu	37	chr1	153283097	153283097	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	taaaacttaccccaagcctgGagacccagaatgaagaaggc	9	11	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	153283097	153283097	G	C	SNP	PGLYRP3	ENST00000290722	human	ensembl	69_37n	-1	known	silent	c.45	p.L15	0.000	NULL	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527	84	0	0	98	11	10.09	-	-	-	C	153283097	G	C	153283097	2	2	805	1	0	0	0	0	0	0	0	1	11869	1161	41	2		2	PGLYRP3	1	153283097	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1773800	153283097	95967524	13	68167										
DCST2	0	genome.wustl.edu	37	chr1	154991075	154991075	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agggaggtgagagagggactGagggttctgaagctggagtg	21	3	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	154991075	154991075	G	C	SNP	DCST2	ENST00000368424	human	ensembl	69_37n	-1	known	nonsense	c.2267	p.S756*	0.767	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	87	0	0	174	29	14.22	-	-	-	C	154991075	G	C	154991075	4	2	805	1	0	0	0	0	0	1	0	0	4334	1294	45	2	58	2	DCST2	1	154991075	Nonsense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1707978	154991075	94259546	14	68168										
PRCC	0	genome.wustl.edu	37	chr1	156737729	156737729	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccttgctgcctccgccccctCagatgctggcgccagccttt	9	19	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	156737729	156737729	C	G	SNP	PRCC	ENST00000271526	human	ensembl	69_37n	1	known	missense	c.166	p.Q56E	1.000	NULL	pfam_PRCC_C	-	no_errors	PRCC	HGNC	ENSG00000143294	13	0	0	10	4	28.57	-	-	-	G	156737729	C	G	156737729	3	3	805	1	0	0	0	0	1	0	0	0	12528	827	29	2	168	2	PRCC	1	156737729	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	1746654	156737729	92512892	15	68169										
FCGR3A	0	genome.wustl.edu	37	chr1	161518251	161518251	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	accgggtcactgagggtggaGaggtttgtctggcacctgta	16	8	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	161518251	161518251	G	C	SNP	FCGR3A	ENST00000426740	human	ensembl	69_37n	-1	known	missense	c.329	p.S110C	0.255	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FCGR3A	HGNC	ENSG00000203747	256	0	0	422	55	11.46	-	-	-	C	161518251	G	C	161518251	3	2	805	1	0	0	0	0	1	0	0	0	5830	929	33	2	497	2	FCGR3A	1	161518251	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	4780522	161518251	87732370	16	68170										
SERPINC1	0	genome.wustl.edu	37	chr1	173884020	173884020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtgacaggtcacgcagtcccAgaagccaatgagcagcaagg	13	11	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	173884020	173884020	A	G	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.79	p.W27R	1.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	86	0	0	73	9	10.98	-	-	-	G	173884020	A	G	173884020	3	3	805	1	0	0	0	0	1	0	0	0	14197	188	7	5	1339	5	SERPINC1	1	173884020	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	12365769	173884020	75366601	17	68171										
FAM5B	0	genome.wustl.edu	37	chr1	177250316	177250316	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tactatgagcccctggagatGactgatccctctaagaattt	8	10	1	5			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	177250316	177250316	G	T	SNP	FAM5B	ENST00000361539	human	ensembl	69_37n	1	known	missense	c.2004	p.M668I	0.990	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	35	0	0	36	13	26	-	-	-	T	177250316	G	T	177250316	3	4	805	1	0	0	0	0	1	0	0	0	5638	1290	45	2	2030	2	FAM5B	1	177250316	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	3366296	177250316	72000305	18	68172										
PTPRC	0	genome.wustl.edu	37	chr1	198691597	198691597	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	accctttattttacatcattCaacatcttgtaagttatcac	2	10	4	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	198691597	198691597	C	G	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	nonsense	c.1712	p.S571*	0.982	pirsf_Leukocyte_common_ag,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	74	0	0	68	17	20	-	-	-	G	198691597	C	G	198691597	4	3	805	1	0	0	0	0	0	1	0	0	12880	838	29	2	1771	2	PTPRC	1	198691597	Nonsense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	21441281	198691597	50559024	19	68173										
DDX59	0	genome.wustl.edu	37	chr1	200635322	200635322	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cagctgctgtttaagattttCaatctggtcttcctgaaggt	9	8	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	200635322	200635322	C	G	SNP	DDX59	ENST00000331314	human	ensembl	69_37n	-1	known	missense	c.547	p.E183Q	0.482	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197	75	0	0	86	69	44.52	-	-	-	G	200635322	C	G	200635322	3	3	805	1	0	0	0	0	1	0	0	0	4407	835	29	2	1340	2	DDX59	1	200635322	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	1943725	200635322	48615299	20	68174										
PIGR	0	genome.wustl.edu	37	chr1	207106470	207106470	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agagtctagcaccttctcatCaggagcagcgtctgccttcg	10	13	4	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	207106470	207106470	C	G	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.1747	p.D583H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	131	0	0	77	54	41.22	-	-	-	G	207106470	C	G	207106470	3	3	805	1	0	0	0	0	1	0	0	0	11971	826	29	2	567	2	PIGR	1	207106470	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	6471148	207106470	42144151	21	68175										
PCNXL2	0	genome.wustl.edu	37	chr1	233161098	233161098	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcagcagcctctgtcctcctCgtcgccctccatgatggctt	9	17	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	1	233161098	233161098	C	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	nonsense	c.4399	p.E1467*	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	127	0	0	106	53	33.12	-	-	-	A	233161098	C	A	233161098	4	1	805	1	0	0	0	0	0	1	0	0	11665	893	31	3	2050	3	PCNXL2	1	233161098	Nonsense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	26054628	233161098	16089523	22	68176										
WDR35	0	genome.wustl.edu	37	chr2	20113974	20113974	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gctctgctggcgcatgcgcaGagtgctagcagagagtagat	15	9	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	20113974	20113974	G	A	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	silent	c.3219	p.L1073	0.996	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	107	0	0	61	18	22.78	-	-	-	A	20113974	G	A	20113974	2	1	805	1	0	0	0	0	0	0	0	1	17386	929	33	2		2	WDR35	2	20113974	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		20113974	223085399	23	68177										
GPR113	0	genome.wustl.edu	37	chr2	26534505	26534505	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atgatgacctctccctggctGaaggcccggtcacctgccat	10	15	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	26534505	26534505	G	A	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	silent	c.1494	p.F498	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	82	0	0	30	6	16.67	-	-	-	A	26534505	G	A	26534505	2	1	805	1	0	0	0	0	0	0	0	1	6680	1281	45	2		2	GPR113	2	26534505	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	6420531	26534505	216664868	24	68178										
RTN4	0	genome.wustl.edu	37	chr2	55253275	55253275	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttcatatggtggggggttttCaggctcatgttttatgcttt	12	5	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	55253275	55253275	C	T	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.1960	p.E654K	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	18	0	0	6	6	50	-	-	-	T	55253275	C	T	55253275	3	4	805	1	0	0	0	0	1	0	0	0	13814	835	29	2	1684	2	RTN4	2	55253275	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	28718770	55253275	187946098	25	68179										
KCMF1	0	genome.wustl.edu	37	chr2	85280380	85280380	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtccactttagtgcgtgaaGagagctcatcctcagatgag	11	9	2	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	85280380	85280380	G	A	SNP	KCMF1	ENST00000409785	human	ensembl	69_37n	1	known	missense	c.994	p.E332K	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_RING_finger_144,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407	39	0	0	31	11	26.19	-	-	-	A	85280380	G	A	85280380	3	1	805	1	0	0	0	0	1	0	0	0	8054	943	33	2	1020	2	KCMF1	2	85280380	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	30027105	85280380	157918993	26	68180										
GCC2	0	genome.wustl.edu	37	chr2	109102990	109102990	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cagctggctgaaataacatcAgagaagcacaaaatccacga	8	10	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	109102990	109102990	A	G	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	silent	c.3816	p.S1272	0.574	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	96	0	0	36	26	41.94	-	-	-	G	109102990	A	G	109102990	2	3	805	1	0	0	0	0	0	0	0	1	6336	175	7	5		5	GCC2	2	109102990	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	23822610	109102990	134096383	27	68181										
NEB	0	genome.wustl.edu	37	chr2	152541307	152541307	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctcacatcgctctgcagcgcAtatgccttcttggcaaggtc	9	14	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	152541307	152541307	A	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.2820	p.Y940	0.993	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	89	0	0	55	15	21.43	-	-	-	G	152541307	A	G	152541307	2	3	805	1	0	0	0	0	0	0	0	1	10374	224	8	5		5	NEB	2	152541307	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	43438317	152541307	90658066	28	68182										
FAM124B	0	genome.wustl.edu	37	chr2	225244906	225244906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agatgccattcttaacaccaAgttctggattcagctgaacc	7	11	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	225244906	225244906	A	C	SNP	FAM124B	ENST00000409685	human	ensembl	69_37n	-1	known	missense	c.752	p.L251R	0.000	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019	32	0	0	30	9	23.08	-	-	-	C	225244906	A	C	225244906	3	2	805	1	0	0	0	0	1	0	0	0	5466	72	3	5	619	5	FAM124B	2	225244906	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	72703599	225244906	17954467	29	68183										
SP110	0	genome.wustl.edu	37	chr2	231077589	231077589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gggaggatgttccaggctcaCtgactcttggcgcacagggt	15	10	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	2	231077589	231077589	C	T	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.470	p.S157N	0.000	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	165	0	0	151	20	11.7	-	-	-	T	231077589	C	T	231077589	3	4	805	1	0	0	0	0	1	0	0	0	15050	565	20	4	1799	4	SP110	2	231077589	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	5832683	231077589	12121784	30	68184										
ANKRD28	0	genome.wustl.edu	37	chr3	15727589	15727589	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cagcaatgagtaaacacagtCtgtgtgcccgttgagaacag	11	9	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	15727589	15727589	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.2098	p.D700N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	167	0	0	89	87	49.43	-	-	-	T	15727589	C	T	15727589	3	4	805	1	0	0	0	0	1	0	0	0	656	913	32	2	1198	2	ANKRD28	3	15727589	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		15727589	182294841	31	68185										
SCN5A	0	genome.wustl.edu	37	chr3	38645493	38645493	+	Missense_Mutation	SNP	T	T	A													0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttcagaacccaggtctcgccTgcgaaaggtgaaaatgctcc							TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	38645493	38645493	T	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	missense	c.1600	p.R534W	0.341	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	69	0	0	42	17	28.33	-	-	-	A	38645493	T	A	38645493	3	1	805	1	0	0	0	0	1	0	0	0	14010	1579	55	5	4518	5	SCN5A	3	38645493	Missense_Mutation	SNP	T	TCGA-E2-A1IN-01A-11D-A13L-09	22917904	38645493	159376937	32	68186	489	2								
SCN5A	0	genome.wustl.edu	37	chr3	38645494	38645494	+	Silent	SNP	G	G	A													0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcagaacccaggtctcgcctGcgaaaggtgaaaatgctccc							TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	38645494	38645494	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.1599	p.R533	0.328	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	68	0	0	43	18	29.51	-	-	-	A	38645494	G	A	38645494	2	1	805	1	0	0	0	0	0	0	0	1	14010	1306	46	4		4	SCN5A	3	38645494	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1	38645494	159376936	33	68187	489	2								
SLC25A38	0	genome.wustl.edu	37	chr3	39425264	39425264	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgcaaccccaagatgtcggaGacacggtggaaacgcttatg	12	10	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	39425264	39425264	G	A	SNP	SLC25A38	ENST00000273158	human	ensembl	69_37n	1	known	missense	c.49	p.D17N	0.991	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A38	HGNC	ENSG00000144659	83	0	0	20	28	58.33	-	-	-	A	39425264	G	A	39425264	3	1	805	1	0	0	0	0	1	0	0	0	14591	942	33	2	51	2	SLC25A38	3	39425264	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	779770	39425264	158597166	34	68188										
COL7A1	0	genome.wustl.edu	37	chr3	48609475	48609475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctcccctgcacggccagcttCaccctgcacagaatggcagg	10	17	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	48609475	48609475	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.7027	p.E2343K	1.000	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	57	0	0	8	14	63.64	-	-	-	T	48609475	C	T	48609475	3	4	805	1	0	0	0	0	1	0	0	0	3734	835	29	2	1919	2	COL7A1	3	48609475	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	9184211	48609475	149412955	35	68189										
HEMK1	0	genome.wustl.edu	37	chr3	50608618	50608618	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccggggctgggccttcagctCatggcaaccccaaccacctc	10	18	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	50608618	50608618	C	T	SNP	HEMK1	ENST00000232854	human	ensembl	69_37n	1	known	missense	c.83	p.S28L	0.905	NULL	pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,prints_D21N6_MeTrfase,tigrfam_Release_fac_Glu-N5_MeTfrase,tigrfam_Modification_methylase_HemK	-	no_errors	HEMK1	HGNC	ENSG00000114735	53	0	0	20	15	42.86	-	-	-	T	50608618	C	T	50608618	3	4	805	1	0	0	0	0	1	0	0	0	7102	838	29	2	85	2	HEMK1	3	50608618	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	1999143	50608618	147413812	36	68190										
CACNA1D	0	genome.wustl.edu	37	chr3	53531432	53531432	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cgacctgcccgcgcccttttCtgtttatcactcaataaccc	5	17	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	53531432	53531432	C	G	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.321	p.F107L	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	123	0	0	51	68	57.14	-	-	-	G	53531432	C	G	53531432	3	3	805	1	0	0	0	0	1	0	0	0	2566	912	32	2	327	2	CACNA1D	3	53531432	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2922814	53531432	144490998	37	68191										
DNASE1L3	0	genome.wustl.edu	37	chr3	58190568	58190568	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgcgtctccatcctgatagtCatggtagtgataactcctct	8	11	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	58190568	58190568	C	G	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	missense	c.361	p.D121H	0.983	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	126	0	0	44	32	42.11	-	-	-	G	58190568	C	G	58190568	3	3	805	1	0	0	0	0	1	0	0	0	4698	826	29	2	576	2	DNASE1L3	3	58190568	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	4659136	58190568	139831862	38	68192										
PRICKLE2	0	genome.wustl.edu	37	chr3	64133158	64133158	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttcttgccaattttggcactGcgccgggactccttggccct	10	14	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	64133158	64133158	G	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	silent	c.1008	p.R336	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	133	0	0	45	55	55	-	-	-	A	64133158	G	A	64133158	2	1	805	1	0	0	0	0	0	0	0	1	12568	1306	46	4		4	PRICKLE2	3	64133158	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	5942590	64133158	133889272	39	68193										
C3orf30	0	genome.wustl.edu	37	chr3	118865557	118865557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tatgccatctgaccagagagGttccagacagaccgaccaca	9	13	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	118865557	118865557	G	T	SNP	C3orf30	ENST00000295622	human	ensembl	69_37n	1	known	missense	c.521	p.G174V	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	39	0	0	24	8	25	-	-	-	T	118865557	G	T	118865557	3	4	805	1	0	0	0	0	1	0	0	0	2240	1261	44	4	523	4	C3orf30	3	118865557	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	54732399	118865557	79156873	40	68194										
ATR	0	genome.wustl.edu	37	chr3	142266743	142266743	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	caggctccccagttcaatttCtgtttcattctaacccaaag	5	13	4	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	142266743	142266743	C	T	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.3181	p.E1061K	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	106	0	0	88	17	16.04	-	-	-	T	142266743	C	T	142266743	3	4	805	1	0	0	0	0	1	0	0	0	1208	922	32	2	4881	2	ATR	3	142266743	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	23401186	142266743	55755687	41	68195										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0	49	41	45.56	-	-	-	A	178936082	G	A	178936082	3	1	805	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	36669339	178936082	19086348	42	68196										
PIK3CA	0	genome.wustl.edu	37	chr3	178947827	178947827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgacctgtttacacgttcatGtgctggatactgtgtagcta	10	8	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	178947827	178947827	G	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2702	p.C901F	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	128	0	0	92	14	13.21	-	-	-	T	178947827	G	T	178947827	3	4	805	1	0	0	0	0	1	0	0	0	11987	1377	48	4	2772	4	PIK3CA	3	178947827	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	11745	178947827	19074603	43	68197										
LRCH3	0	genome.wustl.edu	37	chr3	197574833	197574833	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agcttgctgccctgcagtatGaggaggagaaaataaggacc	13	8	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	3	197574833	197574833	G	T	SNP	LRCH3	ENST00000438796	human	ensembl	69_37n	1	known	nonsense	c.1471	p.E491*	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	85	0	0	32	38	54.29	-	-	-	T	197574833	G	T	197574833	4	4	805	1	0	0	0	0	0	1	0	0	9000	1291	45	2	1517	2	LRCH3	3	197574833	Nonsense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	18627006	197574833	447597	44	68198										
POLN	0	genome.wustl.edu	37	chr4	2210055	2210055	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tttctgtagaactgaagcctCttgattatactgtggaatta	8	6	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	2210055	2210055	C	G	SNP	POLN	ENST00000382865	human	ensembl	69_37n	-1	known	missense	c.373	p.E125Q	0.139	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	106	0	0	44	21	32.31	-	-	-	G	2210055	C	G	2210055	3	3	805	1	0	0	0	0	1	0	0	0	12281	922	32	2	2417	2	POLN	4	2210055	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		2210055	188944221	45	68199										
FBXL5	0	genome.wustl.edu	37	chr4	15638232	15638232	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcttgaggattaagatagctGaaaattgacagcattacctc	8	7	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	15638232	15638232	G	A	SNP	FBXL5	ENST00000513163	human	ensembl	69_37n	-1	novel	nonsense	c.412	p.Q138*	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FBXL5	HGNC	ENSG00000118564	100	0	0	74	40	35.09	-	-	-	A	15638232	G	A	15638232	4	1	805	1	0	0	0	0	0	1	0	0	5768	1281	45	2	1452	2	FBXL5	4	15638232	Nonsense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	13428177	15638232	175516044	46	68200										
LGI2	0	genome.wustl.edu	37	chr4	25005818	25005818	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atttgtaaatgtgagagccaCcgaagagctgggctaccacc	11	10	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	25005818	25005818	C	G	SNP	LGI2	ENST00000382114	human	ensembl	69_37n	-1	known	missense	c.893	p.G298A	1.000	pfam_EPTP	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	52	0	0	36	15	29.41	-	-	-	G	25005818	C	G	25005818	3	3	805	1	0	0	0	0	1	0	0	0	8807	507	18	4	748	4	LGI2	4	25005818	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	9367586	25005818	166148458	47	68201										
FAM114A1	0	genome.wustl.edu	37	chr4	38907253	38907253	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atactgaaaacggagtccctGaaagtgagtgatgtgtctcc	11	8	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	38907253	38907253	G	A	SNP	FAM114A1	ENST00000358869	human	ensembl	69_37n	1	known	missense	c.547	p.E183K	0.000	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A1	HGNC	ENSG00000197712	67	0	0	40	22	35.48	-	-	-	A	38907253	G	A	38907253	3	1	805	1	0	0	0	0	1	0	0	0	5443	1291	45	2	557	2	FAM114A1	4	38907253	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	13901435	38907253	152247023	48	68202										
PPEF2	0	genome.wustl.edu	37	chr4	76805791	76805791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tggtttcctctgttaagatgGaactctttggggtaaaccag	11	7	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	76805791	76805791	G	T	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	missense	c.702	p.F234L	0.999	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	98	0	0	59	19	24.36	-	-	-	T	76805791	G	T	76805791	3	4	805	1	0	0	0	0	1	0	0	0	12381	1165	41	2	1599	2	PPEF2	4	76805791	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	37898538	76805791	114348485	49	68203										
HELQ	0	genome.wustl.edu	37	chr4	84361040	84361040	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttaaaaatttgcatatcattTctgctacattttcacagttc	3	8	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	84361040	84361040	T	C	SNP	HELQ	ENST00000295488	human	ensembl	69_37n	-1	known	missense	c.1784	p.E595G	1.000	smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312	57	0	0	49	12	19.67	-	-	-	C	84361040	T	C	84361040	3	2	805	1	0	0	0	0	1	0	0	0	7098	1783	62	5	1565	5	HELQ	4	84361040	Missense_Mutation	SNP	T	TCGA-E2-A1IN-01A-11D-A13L-09	7555249	84361040	106793236	50	68204										
AGXT2L1	0	genome.wustl.edu	37	chr4	109669230	109669230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cagtgagataattccctactCtcttggcatttccttgaagg	8	10	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	4	109669230	109669230	C	G	SNP	AGXT2L1	ENST00000296486	human	ensembl	69_37n	-1	known	missense	c.1013	p.R338T	0.329	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L1	HGNC	ENSG00000164089	218	0	0	141	26	15.57	-	-	-	G	109669230	C	G	109669230	3	3	805	1	0	0	0	0	1	0	0	0	406	913	32	2	506	2	AGXT2L1	4	109669230	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	25308190	109669230	81485046	51	68205										
ADCY2	0	genome.wustl.edu	37	chr5	7709482	7709482	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gacagcatgaccacagagaaCggcaagatcagcaccacggt	11	12	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	7709482	7709482	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	silent	c.1560	p.N520	0.962	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	65	0	0	77	26	25.24	-	-	-	T	7709482	C	T	7709482	2	4	805	1	0	0	0	0	0	0	0	1	294	535	19	1		1	ADCY2	5	7709482	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		7709482	173205778	52	68206										
DAP	0	genome.wustl.edu	37	chr5	10681199	10681199	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gctgctggatgtgctgggttCttggggaaggatgcttgtcc	17	7	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	10681199	10681199	C	G	SNP	DAP	ENST00000230895	human	ensembl	69_37n	-1	known	missense	c.278	p.R93T	0.001	NULL	NULL	-	no_errors	DAP	HGNC	ENSG00000112977	161	0	0	74	93	55.36	-	-	-	G	10681199	C	G	10681199	3	3	805	1	0	0	0	0	1	0	0	0	4265	913	32	2	34	2	DAP	5	10681199	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2971717	10681199	170234061	53	68207										
DNAH5	0	genome.wustl.edu	37	chr5	13769169	13769169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgctgtccacaatggcctggGccctgtccttcaccttctgt	9	15	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	13769169	13769169	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.9797	p.A3266V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	199	0	0	145	129	46.57	-	-	-	A	13769169	G	A	13769169	3	1	805	1	0	0	0	0	1	0	0	0	4640	1203	42	4	4165	4	DNAH5	5	13769169	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	3087970	13769169	167146091	54	68208										
UBE2D2	0	genome.wustl.edu	37	chr5	138980017	138980017	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cagcaggtcctgttggagatGatagtaagtatttaaaagga	12	4	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	138980017	138980017	G	A	SNP	UBE2D2	ENST00000398733	human	ensembl	69_37n	1	known	missense	c.85	p.D29N	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D2	HGNC	ENSG00000131508	133	0	0	75	50	40	-	-	-	A	138980017	G	A	138980017	3	1	805	1	0	0	0	0	1	0	0	0	16946	1290	45	2	91	2	UBE2D2	5	138980017	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	125210848	138980017	41935243	55	68209										
PCDHA3	0	genome.wustl.edu	37	chr5	140180926	140180926	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggcaccttcgtgggccgcatCgcgcaggacctggggctgga	17	13	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	140180926	140180926	C	G	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	1	known	missense	c.144	p.I48M	0.993	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	70	0	0	46	30	39.47	-	-	-	G	140180926	C	G	140180926	3	3	805	1	0	0	0	0	1	0	0	0	11598	874	31	3	146	3	PCDHA3	5	140180926	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	1200909	140180926	40734334	56	68210										
CSNK1A1	0	genome.wustl.edu	37	chr5	148885086	148885086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgaccctgcccactggaagaGgctgcctgctgtgctgcttt	12	13	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	148885086	148885086	G	C	SNP	CSNK1A1	ENST00000503350	human	ensembl	69_37n	-1	putative	missense	c.422	p.P141R	1.000	NULL	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSNK1A1	HGNC	ENSG00000113712	202	0	0	153	82	34.75	-	-	-	C	148885086	G	C	148885086	3	2	805	1	0	0	0	0	1	0	0	0	3982	987	35	4	91	4	CSNK1A1	5	148885086	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	8704160	148885086	32030174	57	68211										
SLU7	0	genome.wustl.edu	37	chr5	159842203	159842203	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tctagctccttcttctttctCcagtcctctctggtcatctt	4	15	7	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	5	159842203	159842203	C	T	SNP	SLU7	ENST00000297151	human	ensembl	69_37n	-1	known	nonsense	c.99	p.W33*	1.000	NULL	pfam_Slu7,superfamily_Znf_CCHC	-	no_errors	SLU7	HGNC	ENSG00000164609	213	0	0	164	163	49.85	-	-	-	T	159842203	C	T	159842203	4	4	805	1	0	0	0	0	0	1	0	0	14844	856	30	2	1721	2	SLU7	5	159842203	Nonsense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	10957117	159842203	21073057	58	68212										
RIOK1	0	genome.wustl.edu	37	chr6	7405582	7405582	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gagaacatggatgcttatctCtcaaaggtaagatggggaga	13	5	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	7405582	7405582	C	G	SNP	RIOK1	ENST00000379834	human	ensembl	69_37n	1	known	silent	c.1197	p.L399	0.389	pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784	89	0	0	36	13	26.53	-	-	-	G	7405582	C	G	7405582	2	3	805	1	0	0	0	0	0	0	0	1	13463	900	32	2		2	RIOK1	6	7405582	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		7405582	163709485	59	68213										
DSP	0	genome.wustl.edu	37	chr6	7580958	7580958	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gagattacaaagggtccagtAtgacctgcagaaagcaaaca	10	8	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	7580958	7580958	A	C	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.4535	p.Y1512S	0.998	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	61	0	0	59	10	14.49	-	-	-	C	7580958	A	C	7580958	3	2	805	1	0	0	0	0	1	0	0	0	4816	449	16	5	4625	5	DSP	6	7580958	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	175376	7580958	163534109	60	68214										
MSH5	0	genome.wustl.edu	37	chr6	31730243	31730243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgaaactggatttggaagatCctaacctggacttgaacgtt	10	7	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	31730243	31730243	C	T	SNP	MSH5	ENST00000375742	human	ensembl	69_37n	1	known	missense	c.2491	p.P831S	0.997	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410	116	0	0	70	13	15.66	-	-	-	T	31730243	C	T	31730243	3	4	805	1	0	0	0	0	1	0	0	0	9945	855	30	2	2588	2	MSH5	6	31730243	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	24149285	31730243	139384824	61	68215										
ZBTB22	0	genome.wustl.edu	37	chr6	33283626	33283626	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtacggacatcacttatgctGagggtagcctcaggccctcc	11	13	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	33283626	33283626	G	A	SNP	ZBTB22	ENST00000418724	human	ensembl	69_37n	-1	known	silent	c.1068	p.L356	0.972	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	45	0	0	26	9	25.71	-	-	-	A	33283626	G	A	33283626	2	1	805	1	0	0	0	0	0	0	0	1	17626	1277	45	2		2	ZBTB22	6	33283626	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1553383	33283626	137831441	62	68216										
USP49	0	genome.wustl.edu	37	chr6	41774547	41774547	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tagcgggtgtcccgtctcctCaaagtgtttcagggcgtggt	14	10	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	41774547	41774547	C	G	SNP	USP49	ENST00000373009	human	ensembl	69_37n	-1	known	missense	c.175	p.E59Q	0.996	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP49	HGNC	ENSG00000164663	64	0	0	34	5	12.82	-	-	-	G	41774547	C	G	41774547	3	3	805	1	0	0	0	0	1	0	0	0	17177	835	29	2	1763	2	USP49	6	41774547	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	8490921	41774547	129340520	63	68217										
AKD1	0	genome.wustl.edu	37	chr6	109814642	109814642	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tatgatcaaagtcaatggctCtgaactgaggttccttgtat	9	7	3	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	6	109814642	109814642	C	G	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.5666	p.R1889T	0.995	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	154	0	0	86	27	23.89	-	-	-	G	109814642	C	G	109814642	3	3	805	1	0	0	0	0	1	0	0	0	460	913	32	2	73	2	AKD1	6	109814642	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	68040095	109814642	61300425	64	68218										
SDK1	0	genome.wustl.edu	37	chr7	4213862	4213862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atgtctttgcagcctccgagGgacgaaagcctgaatggcct	12	11	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	4213862	4213862	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	silent	c.4809	p.R1603	0.975	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	54	0	0	28	10	26.32	-	-	-	A	4213862	G	A	4213862	2	1	805	1	0	0	0	0	0	0	0	1	14056	1223	43	4		4	SDK1	7	4213862	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		4213862	154924801	65	68219										
ZMIZ2	0	genome.wustl.edu	37	chr7	44802875	44802875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	taaagcggaacttcagcagcGgcaccatccctggcacccct	9	16	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	44802875	44802875	G	T	SNP	ZMIZ2	ENST00000309315	human	ensembl	69_37n	1	known	missense	c.1723	p.G575C	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515	57	0	0	49	7	12.5	-	-	-	T	44802875	G	T	44802875	3	4	805	1	0	0	0	0	1	0	0	0	17793	1116	39	3	1769	3	ZMIZ2	7	44802875	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	40589013	44802875	114335788	66	68220										
POM121C	0	genome.wustl.edu	37	chr7	75070302	75070302	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtccttttcttcttcttctCtttgagggcactcagtacag	7	11	5	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	75070302	75070302	C	G	SNP	POM121C	ENST00000257665	human	ensembl	69_37n	-1	known	missense	c.883	p.E295Q	1.000	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	314	0	0	226	131	36.59	-	-	-	G	75070302	C	G	75070302	3	3	805	1	0	0	0	0	1	0	0	0	12314	922	32	2	2850	2	POM121C	7	75070302	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	30267427	75070302	84068361	67	68221										
PIK3CG	0	genome.wustl.edu	37	chr7	106509345	106509345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cactgtccagcaaggcctctGcagagtcccccagttctgag	10	15	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	106509345	106509345	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	1	known	missense	c.1339	p.A447T	0.027	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	50	0	0	27	23	46	-	-	-	A	106509345	G	A	106509345	3	1	805	1	0	0	0	0	1	0	0	0	11990	1319	46	4	1341	4	PIK3CG	7	106509345	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	31439043	106509345	52629318	68	68222										
FOXP2	0	genome.wustl.edu	37	chr7	114066652	114066652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tctaagcagccaattagatgCtggcagcagagatggaagat	12	7	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	114066652	114066652	C	A	SNP	FOXP2	ENST00000408937	human	ensembl	69_37n	1	known	missense	c.86	p.A29D	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573	62	0	0	30	17	36.17	-	-	-	A	114066652	C	A	114066652	3	1	805	1	0	0	0	0	1	0	0	0	6075	797	28	4	88	4	FOXP2	7	114066652	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	7557307	114066652	45072011	69	68223										
PLXNA4	0	genome.wustl.edu	37	chr7	132192988	132192988	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cctgacagatagtgctccttCttatgataaggctcccccag	8	13	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	7	132192988	132192988	C	G	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.465	p.K155N	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	67	0	0	34	17	33.33	-	-	-	G	132192988	C	G	132192988	3	3	805	1	0	0	0	0	1	0	0	0	12196	912	32	2	5657	2	PLXNA4	7	132192988	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	18126336	132192988	26945675	70	68224										
LETM2	0	genome.wustl.edu	37	chr8	38258464	38258464	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tggaacacttagatcgccctCagctggttgccctttgcaaa	9	12	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	38258464	38258464	C	T	SNP	LETM2	ENST00000379957	human	ensembl	69_37n	1	known	nonsense	c.877	p.Q293*	1.000	pfam_LETM1	pfam_LETM1	-	no_errors	LETM2	HGNC	ENSG00000165046	83	0	0	86	32	27.12	-	-	-	T	38258464	C	T	38258464	4	4	805	1	0	0	0	0	0	1	0	0	8789	827	29	2	602	2	LETM2	8	38258464	Nonsense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		38258464	108105558	71	68225										
UBE2V2	0	genome.wustl.edu	37	chr8	48962528	48962528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tatgaacggaataaataattCcagtgggatggtaagttaat	10	3	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	48962528	48962528	C	G	SNP	UBE2V2	ENST00000523111	human	ensembl	69_37n	1	known	missense	c.281	p.S94C	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2V2	HGNC	ENSG00000169139	67	0	0	49	23	31.94	-	-	-	G	48962528	C	G	48962528	3	3	805	1	0	0	0	0	1	0	0	0	16973	855	30	2	291	2	UBE2V2	8	48962528	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	10704064	48962528	97401494	72	68226										
ST18	0	genome.wustl.edu	37	chr8	53038649	53038649	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttgatggtcatgagttcttcAgaaaccttgccctttttgat	8	8	3	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	53038649	53038649	A	T	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	silent	c.2718	p.S906	0.496	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	196	1	0.51	192	26	11.82	-	-	-	T	53038649	A	T	53038649	2	4	805	1	0	0	0	0	0	0	0	1	15303	175	7	5		5	ST18	8	53038649	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	4076121	53038649	93325373	73	68227										
PLEKHF2	0	genome.wustl.edu	37	chr8	96166542	96166542	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aatgtcactattgattccatCaaagatgagggagacttaag	9	6	2	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	96166542	96166542	C	G	SNP	PLEKHF2	ENST00000315367	human	ensembl	69_37n	1	known	missense	c.270	p.I90M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895	50	0	0	50	11	18.03	-	-	-	G	96166542	C	G	96166542	3	3	805	1	0	0	0	0	1	0	0	0	12141	816	29	2	272	2	PLEKHF2	8	96166542	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	43127893	96166542	50197480	74	68228										
TNFRSF11B	0	genome.wustl.edu	37	chr8	119941001	119941001	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tccacatttttgagttgattCactgtttccggaacatatgt	7	8	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	119941001	119941001	C	T	SNP	TNFRSF11B	ENST00000297350	human	ensembl	69_37n	-1	known	missense	c.568	p.E190K	0.844	pirsf_TNFR_11B	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	142	0	0	180	110	37.93	-	-	-	T	119941001	C	T	119941001	3	4	805	1	0	0	0	0	1	0	0	0	16380	835	29	2	649	2	TNFRSF11B	8	119941001	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	23774459	119941001	26423021	75	68229										
ZNF572	0	genome.wustl.edu	37	chr8	125988660	125988660	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcagataaacttaaagagaaAccttcagaatggtctaaaag	8	6	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	125988660	125988660	A	T	SNP	ZNF572	ENST00000319286	human	ensembl	69_37n	1	known	missense	c.150	p.K50N	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938	39	0	0	33	8	19.51	-	-	-	T	125988660	A	T	125988660	3	4	805	1	0	0	0	0	1	0	0	0	18100	40	2	5	156	5	ZNF572	8	125988660	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	6047659	125988660	20375362	76	68230										
TG	0	genome.wustl.edu	37	chr8	133913623	133913623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agcctctgcaatgtgctcaaGagtggagtcctctccaggag	12	11	3	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	133913623	133913623	G	C	SNP	TG	ENST00000220616	human	ensembl	69_37n	1	known	missense	c.3459	p.K1153N	0.020	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	64	0	0	44	14	24.14	-	-	-	C	133913623	G	C	133913623	3	2	805	1	0	0	0	0	1	0	0	0	15908	933	33	2	3521	2	TG	8	133913623	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	7924963	133913623	12450399	77	68231										
LY6K	0	genome.wustl.edu	37	chr8	143784680	143784680	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agaggggccacctatcaactCatcagtgttcaaagaatatg	9	9	4	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	143784680	143784680	C	T	SNP	LY6K	ENST00000561179	human	ensembl	69_37n	1	known	missense	c.563	p.S188L	0.000	NULL	NULL	-	no_errors	LY6K	HGNC	ENSG00000160886	175	0	0	168	54	24.32	-	-	-	T	143784680	C	T	143784680	3	4	805	1	0	0	0	0	1	0	0	0	9165	838	29	2	549	2	LY6K	8	143784680	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	9871057	143784680	2579342	78	68232										
GPT	0	genome.wustl.edu	37	chr8	145730656	145730656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgaagctgctggtggccggcGagggccacacacgcacgggt	17	12	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	8	145730656	145730656	G	A	SNP	GPT	ENST00000394955	human	ensembl	69_37n	1	known	missense	c.523	p.E175K	0.335	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	GPT	HGNC	ENSG00000167701	20	0	0	14	7	33.33	-	-	-	A	145730656	G	A	145730656	3	1	805	1	0	0	0	0	1	0	0	0	6788	1059	37	1	541	1	GPT	8	145730656	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1945976	145730656	633366	79	68233										
IFNA17	0	genome.wustl.edu	37	chr9	21228028	21228028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtccttcaggcaggagaaagGagagattcttcccatttgtg	12	8	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	21228028	21228028	G	T	SNP	IFNA17	ENST00000413767	human	ensembl	69_37n	-1	known	missense	c.145	p.P49T	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA17	HGNC	ENSG00000234829	110	0	0	106	19	15.08	-	-	-	T	21228028	G	T	21228028	3	4	805	1	0	0	0	0	1	0	0	0	7590	1174	41	2	428	2	IFNA17	9	21228028	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		21228028	119985403	80	68234										
IFNA2	0	genome.wustl.edu	37	chr9	21384861	21384861	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	caggcacaagggctgtatttCttctctttcagatagagagt	10	8	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	21384861	21384861	C	T	SNP	IFNA2	ENST00000380206	human	ensembl	69_37n	-1	known	silent	c.468	p.K156	0.011	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA2	HGNC	ENSG00000188379	163	0	0	119	52	30.41	-	-	-	T	21384861	C	T	21384861	2	4	805	1	0	0	0	0	0	0	0	1	7591	912	32	2		2	IFNA2	9	21384861	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	156833	21384861	119828570	81	68235										
PGM5	0	genome.wustl.edu	37	chr9	71002421	71002421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tatctatcttaacctccttcGgaccatctttgactttcatg	4	12	4	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	71002421	71002421	G	A	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.614	p.R205Q	0.995	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	168	0	0	92	37	28.68	-	-	-	A	71002421	G	A	71002421	3	1	805	1	0	0	0	0	1	0	0	0	11875	1116	39	1	628	1	PGM5	9	71002421	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	49617560	71002421	70211010	82	68236										
FAM108B1	0	genome.wustl.edu	37	chr9	74489592	74489592	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aggttcttctctgtgggtttCccggaactggcaccatatcc	10	12	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	74489592	74489592	C	A	SNP	FAM108B1	ENST00000377041	human	ensembl	69_37n	-1	known	silent	c.405	p.G135	0.997	pfam_Dienelactn_hydro	pfam_Peptidase_S9,pfam_Dienelactn_hydro	-	no_errors	FAM108B1	HGNC	ENSG00000107362	54	0	0	26	22	45.83	-	-	-	A	74489592	C	A	74489592	2	1	805	1	0	0	0	0	0	0	0	1	5432	842	30	2		2	FAM108B1	9	74489592	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3487171	74489592	66723839	83	68237										
SLC28A3	0	genome.wustl.edu	37	chr9	86900304	86900304	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tacaaatttgggtccaccttCtttcctcaagtggatccatt	6	11	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	86900304	86900304	C	G	SNP	SLC28A3	ENST00000376238	human	ensembl	69_37n	-1	known	missense	c.1603	p.E535Q	0.933	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506	126	0	0	59	38	39.18	-	-	-	G	86900304	C	G	86900304	3	3	805	1	0	0	0	0	1	0	0	0	14622	922	32	2	492	2	SLC28A3	9	86900304	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	12410712	86900304	54313127	84	68238										
S1PR3	0	genome.wustl.edu	37	chr9	91616635	91616635	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cgctgggcgccctgcccattCtgggctggaactgcctgcac	13	16	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	91616635	91616635	C	T	SNP	S1PR3	ENST00000358157	human	ensembl	69_37n	1	known	silent	c.520	p.L174	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_EDG3_rcpt,prints_S1P_rcpt,prints_7TM_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694	120	0	0	80	53	39.85	-	-	-	T	91616635	C	T	91616635	2	4	805	1	0	0	0	0	0	0	0	1	13881	912	32	2		2	S1PR3	9	91616635	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	4716331	91616635	49596796	85	68239										
ZNF169	0	genome.wustl.edu	37	chr9	97062379	97062379	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agaatgggtagaagggaacaGagaaggaggaacagaccttc	15	5	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	97062379	97062379	G	C	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	1	known	missense	c.539	p.R180T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	44	0	0	20	9	31.03	-	-	-	C	97062379	G	C	97062379	3	2	805	1	0	0	0	0	1	0	0	0	17838	942	33	2	553	2	ZNF169	9	97062379	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	5445744	97062379	44151052	86	68240										
ZNF462	0	genome.wustl.edu	37	chr9	109773294	109773294	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aatctctcctggagaatgcaGaggccaaaaaagaatgagcg	11	8	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	109773294	109773294	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.7684	p.E2562K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	57	0	0	35	14	28.57	-	-	-	A	109773294	G	A	109773294	3	1	805	1	0	0	0	0	1	0	0	0	18022	943	33	2	7550	2	ZNF462	9	109773294	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	12710915	109773294	31440137	87	68241										
SVEP1	0	genome.wustl.edu	37	chr9	113265399	113265399	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gccttctagtctgtacccttCatcacaggcaaccaaacatg	6	14	4	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	113265399	113265399	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.1402	p.E468K	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	172	0	0	88	43	32.82	-	-	-	T	113265399	C	T	113265399	3	4	805	1	0	0	0	0	1	0	0	0	15511	835	29	2	9485	2	SVEP1	9	113265399	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3492105	113265399	27948032	88	68242										
C9orf50	0	genome.wustl.edu	37	chr9	132382053	132382053	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gaatgaacagttgggacaccGcggagaccctgggcagtgct	15	10	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	132382053	132382053	G	T	SNP	C9orf50	ENST00000372478	human	ensembl	69_37n	-1	known	silent	c.565	p.R189	0.003	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058	164	0	0	93	53	36.3	-	-	-	T	132382053	G	T	132382053	2	4	805	1	0	0	0	0	0	0	0	1	2512	1086	38	3		3	C9orf50	9	132382053	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	19116654	132382053	8831378	89	68243										
DDX31	0	genome.wustl.edu	37	chr9	135513749	135513749	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctggcttagggtgagttcttCactgtaagtaggaggaaata	13	5	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	135513749	135513749	C	T	SNP	DDX31	ENST00000310532	human	ensembl	69_37n	-1	known	silent	c.1757	p.*586	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485	104	0	0	60	32	34.78	-	-	-	T	135513749	C	T	135513749	2	4	805	1	0	0	0	0	0	0	0	1	4387	840	29	2		2	DDX31	9	135513749	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3131696	135513749	5699682	90	68244										
C9orf96	0	genome.wustl.edu	37	chr9	136270506	136270506	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggcctccctccaggtggaagCccccagctggggtgcaccac	13	17	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	136270506	136270506	C	A	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	missense	c.2004	p.S668R	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	35	0	0	14	9	39.13	-	-	-	A	136270506	C	A	136270506	3	1	805	1	0	0	0	0	1	0	0	0	2533	738	26	4	2074	4	C9orf96	9	136270506	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	756757	136270506	4942925	91	68245										
VAV2	0	genome.wustl.edu	37	chr9	136661557	136661557	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcccagagcctcaccttcaaGagcaggtggtatttgagcac	11	12	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	9	136661557	136661557	G	C	SNP	VAV2	ENST00000371850	human	ensembl	69_37n	-1	known	silent	c.1026	p.L342	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293	60	0	0	44	15	25.42	-	-	-	C	136661557	G	C	136661557	2	2	805	1	0	0	0	0	0	0	0	1	17229	929	33	2		2	VAV2	9	136661557	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	391051	136661557	4551874	92	68246										
PFKP	0	genome.wustl.edu	37	chr10	3149487	3149487	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aaaataaacccatcacctctGagaaaatcaaagaggtgagt	7	8	3	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	3149487	3149487	G	A	SNP	PFKP	ENST00000381125	human	ensembl	69_37n	1	known	missense	c.856	p.E286K	0.995	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	105	0	0	42	17	28.81	-	-	-	A	3149487	G	A	3149487	3	1	805	1	0	0	0	0	1	0	0	0	11840	1291	45	2	886	2	PFKP	10	3149487	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		3149487	132385260	93	68247										
PRKG1	0	genome.wustl.edu	37	chr10	53227489	53227489	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctcctcctttttagatggtaAggttgaagttacaaaagaag	9	6	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	53227489	53227489	A	T	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	missense	c.485	p.K162M	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	156	0	0	72	35	32.71	-	-	-	T	53227489	A	T	53227489	3	4	805	1	0	0	0	0	1	0	0	0	12603	72	3	5	765	5	PRKG1	10	53227489	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	50078002	53227489	82307258	94	68248										
CTNNA3	0	genome.wustl.edu	37	chr10	67862936	67862936	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctatcagttttcccttcggtCtgaatgctggtgtgactgcg	11	10	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	67862936	67862936	C	G	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	missense	c.1956	p.Q652H	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	110	0	0	56	38	40.43	-	-	-	G	67862936	C	G	67862936	3	3	805	1	0	0	0	0	1	0	0	0	4046	912	32	2	751	2	CTNNA3	10	67862936	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	14635447	67862936	67671811	95	68249										
TET1	0	genome.wustl.edu	37	chr10	70450589	70450589	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	taacactgagaccgtgcaacCtgaagtaaaaagtgaaaccg	9	9	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	70450589	70450589	C	G	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.5429	p.P1810R	0.984	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	70	0	0	41	11	21.15	-	-	-	G	70450589	C	G	70450589	3	3	805	1	0	0	0	0	1	0	0	0	15864	681	24	4	5471	4	TET1	10	70450589	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2587653	70450589	65084158	96	68250										
PSAP	0	genome.wustl.edu	37	chr10	73579279	73579279	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttctcaagagcagccaggatCtcctgcttggtgctgttttt	10	10	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	73579279	73579279	C	T	SNP	PSAP	ENST00000373120	human	ensembl	69_37n	-1	known	silent	c.1293	p.E431	0.998	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746	128	0	0	60	32	34.78	-	-	-	T	73579279	C	T	73579279	2	4	805	1	0	0	0	0	0	0	0	1	12723	912	32	2		2	PSAP	10	73579279	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3128690	73579279	61955468	97	68251										
PDE6C	0	genome.wustl.edu	37	chr10	95415556	95415556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acctaaataagcggcagtttGaaacagttattcatttgttc	7	7	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	95415556	95415556	G	C	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	missense	c.1975	p.E659Q	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	123	0	0	85	15	15	-	-	-	C	95415556	G	C	95415556	3	2	805	1	0	0	0	0	1	0	0	0	11720	1291	45	2	2037	2	PDE6C	10	95415556	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	21836277	95415556	40119191	98	68252										
CALHM2	0	genome.wustl.edu	37	chr10	105207136	105207136	+	Frame_Shift_Del	DEL	G	G	-													0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cgccacaaagccaaagaagcGgcgcacattgttggcagcga							TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	105207136	105207136	G	-	DEL	CALHM2	ENST00000260743	human	ensembl	69_37n	-1	known	frame_shift_del	c.745	p.R249fs	0.999	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172	64	0	0	20	17	45.95	-	-	-	-	105207136	G	-	105207136	7	5	805	1	0	1	0	1	0	0	0	0	2608	1116	39	0	230	0	CALHM2	10	105207136	Frame_Shift_Del	DEL	G	TCGA-E2-A1IN-01A-11D-A13L-09	9791580	105207136	30327611	99	68253										
WDR11	0	genome.wustl.edu	37	chr10	122622406	122622406	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gaaagctctaaataaagtaaAaattttaatcactcaagaga	5	5	3	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	122622406	122622406	A	G	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	missense	c.686	p.K229R	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	74	0	0	33	28	45.9	-	-	-	G	122622406	A	G	122622406	3	3	805	1	0	0	0	0	1	0	0	0	17370	14	1	5	704	5	WDR11	10	122622406	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	17415270	122622406	12912341	100	68254										
LRRC27	0	genome.wustl.edu	37	chr10	134161507	134161507	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gaggctccaccggttagagaGatgaccctccgtgacctccc	11	15	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	10	134161507	134161507	G	C	SNP	LRRC27	ENST00000368613	human	ensembl	69_37n	1	known	missense	c.573	p.E191D	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814	35	0	0	6	4	40	-	-	-	C	134161507	G	C	134161507	3	2	805	1	0	0	0	0	1	0	0	0	9047	933	33	2	591	2	LRRC27	10	134161507	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	11539101	134161507	1373240	101	68255										
OR10A6	0	genome.wustl.edu	37	chr11	7949551	7949551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcaggatggcaaacagaactCgaatgtaagacaagagtatc	10	7	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	7949551	7949551	C	G	SNP	OR10A6	ENST00000309838	human	ensembl	69_37n	-1	known	missense	c.659	p.R220P	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393	75	0	0	32	32	50	-	-	-	G	7949551	C	G	7949551	3	3	805	1	0	0	0	0	1	0	0	0	10967	884	31	3	288	3	OR10A6	11	7949551	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		7949551	127056965	102	68256										
PRDM11	0	genome.wustl.edu	37	chr11	45203410	45203410	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acggaggtctgctcaccactCcgagaccaggagtatggcca	12	13	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	45203410	45203410	C	T	SNP	PRDM11	ENST00000263765	human	ensembl	69_37n	1	known	silent	c.195	p.L65	0.546	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485	45	0	0	22	15	40.54	-	-	-	T	45203410	C	T	45203410	2	4	805	1	0	0	0	0	0	0	0	1	12533	842	30	2		2	PRDM11	11	45203410	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	37253859	45203410	89803106	103	68257										
OR9G1	0	genome.wustl.edu	37	chr11	56468331	56468331	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtggctttattaactcttcAatcatcaccaagaaaacgtt	6	9	4	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	56468331	56468331	A	C	SNP	OR9G1	ENST00000312153	human	ensembl	69_37n	1	known	silent	c.468	p.S156	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914	230	0	0	144	25	14.79	-	-	-	C	56468331	A	C	56468331	2	2	805	1	0	0	0	0	0	0	0	1	11323	117	5	5		5	OR9G1	11	56468331	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	11264921	56468331	78538185	104	68258										
ZDHHC5	0	genome.wustl.edu	37	chr11	57457520	57457520	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	taggaatttgatcatcactgCccctgggtgaataactgtat	9	8	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	57457520	57457520	C	T	SNP	ZDHHC5	ENST00000287169	human	ensembl	69_37n	1	known	silent	c.402	p.C134	1.000	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599	84	0	0	37	19	33.93	-	-	-	T	57457520	C	T	57457520	2	4	805	1	0	0	0	0	0	0	0	1	17714	747	26	4		4	ZDHHC5	11	57457520	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	989189	57457520	77548996	105	68259										
SYT12	0	genome.wustl.edu	37	chr11	66807366	66807366	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcagcattgaggacacctttGagagcatcagtgaactgggg	13	8	2	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	66807366	66807366	G	C	SNP	SYT12	ENST00000393946	human	ensembl	69_37n	1	known	missense	c.313	p.E105Q	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT12	HGNC	ENSG00000173227	37	0	0	23	12	34.29	-	-	-	C	66807366	G	C	66807366	3	2	805	1	0	0	0	0	1	0	0	0	15560	1291	45	2	323	2	SYT12	11	66807366	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	9349846	66807366	68199150	106	68260										
FAT3	0	genome.wustl.edu	37	chr11	92568091	92568091	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttatgcaaaaggttttacctGgtagtggaagccaaagatgg	12	5	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	92568091	92568091	G	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	silent	c.9927	p.L3309	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	46	0	0	18	13	41.94	-	-	-	A	92568091	G	A	92568091	2	1	805	1	0	0	0	0	0	0	0	1	5737	1335	47	4		4	FAT3	11	92568091	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	25760725	92568091	42438425	107	68261										
DCUN1D5	0	genome.wustl.edu	37	chr11	102935019	102935019	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cttacaagcaccatcttcatCatagttactaagatcagcat	4	11	4	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	102935019	102935019	C	T	SNP	DCUN1D5	ENST00000260247	human	ensembl	69_37n	-1	known	missense	c.643	p.D215N	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D5	HGNC	ENSG00000137692	159	1	0.62	95	26	21.49	-	-	-	T	102935019	C	T	102935019	3	4	805	1	0	0	0	0	1	0	0	0	4348	826	29	2	78	2	DCUN1D5	11	102935019	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	10366928	102935019	32071497	108	68262										
SLC37A4	0	genome.wustl.edu	37	chr11	118895783	118895783	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcagcccagccagaaagccgCccactgtcagggggaaaggg	15	13	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	11	118895783	118895783	C	G	SNP	SLC37A4	ENST00000330775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC37A4	HGNC	ENSG00000137700	47	0	0	11	7	38.89	-	-	-	G	118895783	C	G	118895783	1	3	805	0	1	0	0	0	0	0	0	0	14689	739	26	4		4	SLC37A4	11	118895783	RNA	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	15960764	118895783	16110733	109	68263										
CNTN1	0	genome.wustl.edu	37	chr12	41419117	41419117	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gacctccaagtgacatgattGaggctttcaccaagaaagca	9	10	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	41419117	41419117	G	C	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2689	p.E897Q	0.957	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	48	0	0	27	19	41.3	-	-	-	C	41419117	G	C	41419117	3	2	805	1	0	0	0	0	1	0	0	0	3670	1291	45	2	2767	2	CNTN1	12	41419117	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		41419117	92432778	110	68264										
ADAMTS20	0	genome.wustl.edu	37	chr12	43896138	43896138	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtcctaaaactctttctttCattacattaagatcttcatt	2	9	5	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	43896138	43896138	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.684	p.M228I	0.001	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	143	0	0	83	46	35.66	-	-	-	T	43896138	C	T	43896138	3	4	805	1	0	0	0	0	1	0	0	0	266	826	29	2	5191	2	ADAMTS20	12	43896138	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2477021	43896138	89955757	111	68265										
KRT79	0	genome.wustl.edu	37	chr12	53225306	53225306	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctacccaggtaggcctcaaaGaggggctccaggttgttcct	12	12	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	53225306	53225306	G	C	SNP	KRT79	ENST00000330553	human	ensembl	69_37n	-1	known	silent	c.582	p.L194	1.000	pfam_F,superfamily_STAT_TF_coiled-coil	pfam_F,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640	105	0	0	48	33	40.74	-	-	-	C	53225306	G	C	53225306	2	2	805	1	0	0	0	0	0	0	0	1	8545	929	33	2		2	KRT79	12	53225306	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	9329168	53225306	80626589	112	68266										
STAC3	0	genome.wustl.edu	37	chr12	57637603	57637603	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcgcccgcacgcctaaatttCctctagaaagtcggtgggaa	11	12	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	57637603	57637603	C	G	SNP	STAC3	ENST00000332782	human	ensembl	69_37n	-1	known	missense	c.1087	p.E363Q	1.000	pfam_SH3_2,smart_SH3_domain	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC3	HGNC	ENSG00000185482	46	0	0	27	12	30	-	-	-	G	57637603	C	G	57637603	3	3	805	1	0	0	0	0	1	0	0	0	15332	864	30	2	11	2	STAC3	12	57637603	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	4412297	57637603	76214292	113	68267										
DTX3	0	genome.wustl.edu	37	chr12	58002372	58002372	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cctacctcccggactgccctGagggcaacaaggtgctgacc	11	16	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	58002372	58002372	G	A	SNP	DTX3	ENST00000551632	human	ensembl	69_37n	1	known	missense	c.829	p.E277K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498	50	0	0	31	12	27.91	-	-	-	A	58002372	G	A	58002372	3	1	805	1	0	0	0	0	1	0	0	0	4830	1291	45	2	830	2	DTX3	12	58002372	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	364769	58002372	75849523	114	68268										
LLPH	0	genome.wustl.edu	37	chr12	66522788	66522788	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aaaacatcaccgtctagtttGagaatacttttaagcctgct	6	9	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	66522788	66522788	G	A	SNP	LLPH	ENST00000266604	human	ensembl	69_37n	-1	known	silent	c.99	p.L33	0.998	pfam_LAPS18-like	pfam_LAPS18-like	-	no_errors	LLPH	HGNC	ENSG00000139233	176	0	0	117	50	29.94	-	-	-	A	66522788	G	A	66522788	2	1	805	1	0	0	0	0	0	0	0	1	8891	1277	45	2		2	LLPH	12	66522788	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	8520416	66522788	67329107	115	68269										
PPFIA2	0	genome.wustl.edu	37	chr12	82147853	82147853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gaggctttcctgggtctcccGaagggtgtctagaagacgat	14	9	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	82147853	82147853	G	A	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.148	p.R50W	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	95	0	0	36	22	37.93	-	-	-	A	82147853	G	A	82147853	3	1	805	1	0	0	0	0	1	0	0	0	12383	1057	37	1	3745	1	PPFIA2	12	82147853	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	15625065	82147853	51704042	116	68270										
LHX5	0	genome.wustl.edu	37	chr12	113906151	113906151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gagttgtccgtctctttgggGtcgtcctgcagtgcgtcctg	14	11	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	12	113906151	113906151	G	T	SNP	LHX5	ENST00000261731	human	ensembl	69_37n	-1	known	missense	c.456	p.D152E	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX5	HGNC	ENSG00000089116	141	0	0	72	44	37.93	-	-	-	T	113906151	G	T	113906151	3	4	805	1	0	0	0	0	1	0	0	0	8829	1252	44	4	764	4	LHX5	12	113906151	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	31758298	113906151	19945744	117	68271										
KTN1	0	genome.wustl.edu	37	chr14	56107112	56107112	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gatatacagaatatgaatttCttattaaaagctgaagtgca	7	4	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	14	56107112	56107112	C	T	SNP	KTN1	ENST00000395309	human	ensembl	69_37n	1	known	silent	c.1935	p.F645	0.999	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	125	0	0	84	38	31.15	-	-	-	T	56107112	C	T	56107112	2	4	805	1	0	0	0	0	0	0	0	1	8639	912	32	2		2	KTN1	14	56107112	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		56107112	51242428	118	68272										
ACOT1	0	genome.wustl.edu	37	chr14	74004171	74004171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccgcgggccgctgctgctggGacgaaccggtgcgaatcgcc	16	15	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	14	74004171	74004171	G	A	SNP	ACOT1	ENST00000311148	human	ensembl	69_37n	1	known	missense	c.46	p.D16N	1.000	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT1	HGNC	ENSG00000184227	50	0	0	19	6	24	-	-	-	A	74004171	G	A	74004171	3	1	805	1	0	0	0	0	1	0	0	0	148	1174	41	2	48	2	ACOT1	14	74004171	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	17897059	74004171	33345369	119	68273										
PPP4R4	0	genome.wustl.edu	37	chr14	94718190	94718190	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttttctgtaaatatttctttCtacctgctattgaactgaca	4	8	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	14	94718190	94718190	C	G	SNP	PPP4R4	ENST00000304338	human	ensembl	69_37n	1	known	missense	c.1822	p.L608V	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	71	0	0	25	13	33.33	-	-	-	G	94718190	C	G	94718190	3	3	805	1	0	0	0	0	1	0	0	0	12482	912	32	2	1957	2	PPP4R4	14	94718190	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	20714019	94718190	12631350	120	68274										
DEGS2	0	genome.wustl.edu	37	chr14	100625894	100625894	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctggtcggtgtagacccactCgaagtcgctgcggctcgcgc	14	14	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	14	100625894	100625894	C	G	SNP	DEGS2	ENST00000305631	human	ensembl	69_37n	-1	known	missense	c.31	p.E11Q	1.000	pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS2	HGNC	ENSG00000168350	20	0	0	8	5	38.46	-	-	-	G	100625894	C	G	100625894	3	3	805	1	0	0	0	0	1	0	0	0	4459	893	31	3	952	3	DEGS2	14	100625894	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	5907704	100625894	6723646	121	68275										
TDRD9	0	genome.wustl.edu	37	chr14	104506621	104506621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cttccatactgcccgagcacGacatggagcttgcgtttgac	10	13	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	14	104506621	104506621	G	A	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	1	known	missense	c.3805	p.D1269N	0.998	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	109	0	0	76	40	34.48	-	-	-	A	104506621	G	A	104506621	3	1	805	1	0	0	0	0	1	0	0	0	15831	1058	37	1	3935	1	TDRD9	14	104506621	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	3880727	104506621	2842919	122	68276										
DUOX1	0	genome.wustl.edu	37	chr15	45454016	45454016	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgcggatcgcttgcctggctCtggggaccaccgagtaccac	13	14	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	45454016	45454016	C	G	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3937	p.L1313V	1.000	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	80	0	0	29	23	44.23	-	-	-	G	45454016	C	G	45454016	3	3	805	1	0	0	0	0	1	0	0	0	4835	912	32	2	4051	2	DUOX1	15	45454016	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		45454016	57077376	123	68277										
FBN1	0	genome.wustl.edu	37	chr15	48787352	48787352	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gggtgcacgggcttccccacGcagcaccgagggaggagcag	17	13	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	48787352	48787352	G	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.2645	p.A882V	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	78	0	0	35	21	37.5	-	-	-	A	48787352	G	A	48787352	3	1	805	1	0	0	0	0	1	0	0	0	5748	1087	38	1	6150	1	FBN1	15	48787352	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	3333336	48787352	53744040	124	68278										
MYO9A	0	genome.wustl.edu	37	chr15	72180453	72180453	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	caactgacgaaaatcgctgtGatgtctgtaataattacata	7	7	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	72180453	72180453	G	A	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.5360	p.S1787L	0.947	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	122	0	0	73	37	33.64	-	-	-	A	72180453	G	A	72180453	3	1	805	1	0	0	0	0	1	0	0	0	10156	1294	45	2	2563	2	MYO9A	15	72180453	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	23393101	72180453	30350939	125	68279										
SENP8	0	genome.wustl.edu	37	chr15	72432133	72432133	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acgtcagtttcatcagccctGaagtcacccagttcatcaag	7	13	6	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	72432133	72432133	G	A	SNP	SENP8	ENST00000340912	human	ensembl	69_37n	1	known	missense	c.169	p.E57K	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP8	HGNC	ENSG00000166192	39	0	0	33	20	37.74	-	-	-	A	72432133	G	A	72432133	3	1	805	1	0	0	0	0	1	0	0	0	14140	1291	45	2	171	2	SENP8	15	72432133	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	251680	72432133	30099259	126	68280										
SEMA7A	0	genome.wustl.edu	37	chr15	74704309	74704309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gatgttgaaggcgaagctgtGctcctgctcccccggttcca	12	13	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	74704309	74704309	G	A	SNP	SEMA7A	ENST00000261918	human	ensembl	69_37n	-1	known	missense	c.1339	p.H447Y	0.006	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA7A	HGNC	ENSG00000138623	54	0	0	19	6	24	-	-	-	A	74704309	G	A	74704309	3	1	805	1	0	0	0	0	1	0	0	0	14131	1319	46	4	677	4	SEMA7A	15	74704309	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	2272176	74704309	27827083	127	68281										
TBC1D2B	0	genome.wustl.edu	37	chr15	78305373	78305373	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtctggaagtggccaggctCagtgttgtccttgaacttcc	13	10	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	78305373	78305373	C	T	SNP	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	missense	c.2062	p.E688K	0.050	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	117	0	0	69	45	39.47	-	-	-	T	78305373	C	T	78305373	3	4	805	1	0	0	0	0	1	0	0	0	15711	835	29	2	849	2	TBC1D2B	15	78305373	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3601064	78305373	24226019	128	68282										
CRTC3	0	genome.wustl.edu	37	chr15	91136895	91136895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttcaccaagctgataatgttCggggaacccgccatcacggg	11	12	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	15	91136895	91136895	C	T	SNP	CRTC3	ENST00000268184	human	ensembl	69_37n	1	known	missense	c.259	p.R87W	0.765	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577	91	0	0	30	18	35.29	-	-	-	T	91136895	C	T	91136895	3	4	805	1	0	0	0	0	1	0	0	0	3931	875	31	1	269	1	CRTC3	15	91136895	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	12831522	91136895	11394497	129	68283										
CACNA1H	0	genome.wustl.edu	37	chr16	1256238	1256238	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtgctggtgaagaccatggAcaacgtggctaccttctgca	13	10	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	1256238	1256238	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.2738	p.D913G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	71	0	0	73	13	15.12	-	-	-	G	1256238	A	G	1256238	3	3	805	1	0	0	0	0	1	0	0	0	2570	275	10	5	2780	5	CACNA1H	16	1256238	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09		1256238	89098515	130	68284										
C16orf5	0	genome.wustl.edu	37	chr16	4563801	4563801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtggggggccaatgtccgcaGggggcagtggcatgcctgga	20	9	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	4563801	4563801	G	C	SNP	C16orf5	ENST00000399599	human	ensembl	69_37n	-1	known	missense	c.137	p.P46R	1.000	NULL	pfam_LITAF,smart_LITAF	-	no_errors	C16orf5	HGNC	ENSG00000089486	39	0	0	24	16	40	-	-	-	C	4563801	G	C	4563801	3	2	805	1	0	0	0	0	1	0	0	0	1830	1000	35	4	501	4	C16orf5	16	4563801	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	3307563	4563801	85790952	131	68285										
MKL2	0	genome.wustl.edu	37	chr16	14339391	14339391	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gttttcttttgaaggccactCaatgacaaaaatagtaacag	7	7	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	14339391	14339391	C	T	SNP	MKL2	ENST00000341243	human	ensembl	69_37n	1	known	silent	c.1053	p.L351	0.862	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MKL2	HGNC	ENSG00000186260	69	0	0	61	58	48.74	-	-	-	T	14339391	C	T	14339391	2	4	805	1	0	0	0	0	0	0	0	1	9673	813	29	2		2	MKL2	16	14339391	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	9775590	14339391	76015362	132	68286										
HIRIP3	0	genome.wustl.edu	37	chr16	30004965	30004965	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcacgccgggcctcacccttCatgcctagcgcttccagttc	9	18	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	30004965	30004965	C	T	SNP	HIRIP3	ENST00000279392	human	ensembl	69_37n	-1	known	missense	c.1404	p.M468I	1.000	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929	65	0	0	50	41	45.05	-	-	-	T	30004965	C	T	30004965	3	4	805	1	0	0	0	0	1	0	0	0	7172	826	29	2	278	2	HIRIP3	16	30004965	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	15665574	30004965	60349788	133	68287										
ZNF629	0	genome.wustl.edu	37	chr16	30793337	30793337	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggaaggaggccctgcaatctGagcagcggtagggtctggcc	17	10	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	30793337	30793337	G	C	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	nonsense	c.2312	p.S771*	0.978	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	38	0	0	34	21	37.5	-	-	-	C	30793337	G	C	30793337	4	2	805	1	0	0	0	0	0	1	0	0	18149	1294	45	2	301	2	ZNF629	16	30793337	Nonsense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	788372	30793337	59561416	134	68288										
VKORC1	0	genome.wustl.edu	37	chr16	31105925	31105925	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atggcggtgcccacgtcgcaGagcgcgcggtaatcccggtc	15	14	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	31105925	31105925	G	C	SNP	VKORC1	ENST00000394975	human	ensembl	69_37n	-1	known	silent	c.126	p.L42	1.000	pfam_VKOR,smart_VKOR	pfam_VKOR,smart_VKOR	-	no_errors	VKORC1	HGNC	ENSG00000167397	10	0	0	4	6	60	-	-	-	C	31105925	G	C	31105925	2	2	805	1	0	0	0	0	0	0	0	1	17269	929	33	2		2	VKORC1	16	31105925	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	312588	31105925	59248828	135	68289										
ITGAM	0	genome.wustl.edu	37	chr16	31336602	31336602	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agcctggactgcctcgtggtGggtgggccccgggagttcaa	17	11	1	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	16	31336602	31336602	G	T	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	silent	c.2385	p.V795	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	96	0	0	58	34	36.96	-	-	-	T	31336602	G	T	31336602	2	4	805	1	0	0	0	0	0	0	0	1	7941	1335	47	4		4	ITGAM	16	31336602	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	230677	31336602	59018151	136	68290										
DLG4	0	genome.wustl.edu	37	chr17	7100285	7100285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggccactggagagtagcgccGaggggaagtgggggtcatgg	21	7	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	7100285	7100285	G	A	SNP	DLG4	ENST00000293813	human	ensembl	69_37n	-1	known	missense	c.1003	p.R335W	1.000	pfam_PDZ_assoc,superfamily_PDZ,pirsf_M-assoc_guanylate_kinase	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,pfam_L27_1,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG4	HGNC	ENSG00000132535	50	0	0	10	13	56.52	-	-	-	A	7100285	G	A	7100285	3	1	805	1	0	0	0	0	1	0	0	0	4593	1057	37	1	1348	1	DLG4	17	7100285	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		7100285	74094925	137	68291										
POLR2A	0	genome.wustl.edu	37	chr17	7404270	7404270	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtccttaggtggtggtggaGaatggggagctgatcatggg	19	4	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	7404270	7404270	G	A	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	silent	c.1893	p.E631	1.000	pfam_RNA_pol_Rpb1_3	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	260	0	0	239	119	33.24	-	-	-	A	7404270	G	A	7404270	2	1	805	1	0	0	0	0	0	0	0	1	12288	933	33	2		2	POLR2A	17	7404270	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	303985	7404270	73790940	138	68292										
TP53	0	genome.wustl.edu	37	chr17	7578460	7578460	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtagatggccatggcgcggAcgcgggtgccgggcgggggt	22	9	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	7578460	7578460	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.470	p.V157G	0.906	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	65	0	0	13	24	63.16	-	-	-	C	7578460	A	C	7578460	3	2	805	1	0	0	0	0	1	0	0	0	16477	275	10	5	828	5	TP53	17	7578460	Missense_Mutation	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	174190	7578460	73616750	139	68293										
DNAH2	0	genome.wustl.edu	37	chr17	7736442	7736442	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtgctggctgggaccggaaGaactcctgcttggtggaggc	18	9	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	7736442	7736442	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.13032	p.K4344N	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	70	0	0	39	26	40	-	-	-	C	7736442	G	C	7736442	3	2	805	1	0	0	0	0	1	0	0	0	4638	933	33	2	13366	2	DNAH2	17	7736442	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	157982	7736442	73458768	140	68294										
CHD3	0	genome.wustl.edu	37	chr17	7796626	7796626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccctaattgctaagaagaatCctaagatcccaatgtctaag	6	10	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	7796626	7796626	C	G	SNP	CHD3	ENST00000330494	human	ensembl	69_37n	1	known	missense	c.532	p.P178A	1.000	pfam_CHD_N,superfamily_HMG_superfamily	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	49	0	0	60	29	32.58	-	-	-	G	7796626	C	G	7796626	3	3	805	1	0	0	0	0	1	0	0	0	3355	855	30	2	831	2	CHD3	17	7796626	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	60184	7796626	73398584	141	68295										
MYH2	0	genome.wustl.edu	37	chr17	10447097	10447097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tccagtagggggttggcactGatgatttgatcttccagagt	13	7	1	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	10447097	10447097	G	A	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.672	p.I224	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	129	0	0	49	49	50	-	-	-	A	10447097	G	A	10447097	2	1	805	1	0	0	0	0	0	0	0	1	10107	1280	45	2		2	MYH2	17	10447097	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	2650471	10447097	70748113	142	68296										
SPAG5	0	genome.wustl.edu	37	chr17	26918847	26918847	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aagagagctcagcaggttatCttccaagtcatgtcgagaca	10	9	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	26918847	26918847	C	G	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.1306	p.D436H	1.000	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	104	0	0	24	24	50	-	-	-	G	26918847	C	G	26918847	3	3	805	1	0	0	0	0	1	0	0	0	15072	913	32	2	2359	2	SPAG5	17	26918847	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	16471750	26918847	54276363	143	68297										
MAPT	0	genome.wustl.edu	37	chr17	44067416	44067416	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cacttcccgaactggcagttCtggagcaaaggagatgaaac	11	10	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	44067416	44067416	C	G	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	missense	c.1355	p.S452C	1.000	NULL	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	116	0	0	48	23	31.51	-	-	-	G	44067416	C	G	44067416	3	3	805	1	0	0	0	0	1	0	0	0	9368	913	32	2	1381	2	MAPT	17	44067416	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	17148569	44067416	37127794	144	68298										
HOXB9	0	genome.wustl.edu	37	chr17	46703217	46703217	+	Frame_Shift_Del	DEL	C	C	-													0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctccctgcccgccgaagtttCcaaactgtactcgggcgtgc							TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	46703217	46703217	C	-	DEL	HOXB9	ENST00000311177	human	ensembl	69_37n	-1	known	frame_shift_del	c.415	p.E139fs	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB9	HGNC	ENSG00000170689	70	0	0	32	8	20	-	-	-	-	46703217	C	-	46703217	7	5	805	1	0	1	0	1	0	0	0	0	7359	864	30	0	345	0	HOXB9	17	46703217	Frame_Shift_Del	DEL	C	TCGA-E2-A1IN-01A-11D-A13L-09	2635801	46703217	34491993	145	68299										
ACSF2	0	genome.wustl.edu	37	chr17	48538641	48538641	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggcctcctgagcattggcctCtgcaaaggtgaccggctggg	15	12	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	48538641	48538641	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	69_37n	1	known	silent	c.363	p.L121	0.135	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107	66	0	0	31	28	47.46	-	-	-	T	48538641	C	T	48538641	2	4	805	1	0	0	0	0	0	0	0	1	175	900	32	2		2	ACSF2	17	48538641	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	1835424	48538641	32656569	146	68300										
MPO	0	genome.wustl.edu	37	chr17	56356465	56356465	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gccggctcaggggtgaagtcGaggtcgtggtccaacagctg	17	10	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	56356465	56356465	G	C	SNP	MPO	ENST00000340482	human	ensembl	69_37n	-1	known	silent	c.885	p.L295	0.222	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	76	0	0	35	18	33.96	-	-	-	C	56356465	G	C	56356465	2	2	805	1	0	0	0	0	0	0	0	1	9804	1045	37	3		3	MPO	17	56356465	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	7817824	56356465	24838745	147	68301										
FASN	0	genome.wustl.edu	37	chr17	80038680	80038680	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aacaggggccgctccgagctCtgcacggagttgagccgcat	14	13	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	17	80038680	80038680	C	G	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.6714	p.Q2238H	1.000	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	51	0	0	18	9	33.33	-	-	-	G	80038680	C	G	80038680	3	3	805	1	0	0	0	0	1	0	0	0	5729	912	32	2	841	2	FASN	17	80038680	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	23682215	80038680	1156530	148	68302										
LAMA3	0	genome.wustl.edu	37	chr18	21417017	21417017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gagctattggcagatgcagaCattcagctcaagggacacat	11	9	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	18	21417017	21417017	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	silent	c.3057	p.D1019	0.037	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	156	0	0	75	125	62.5	-	-	-	T	21417017	C	T	21417017	2	4	805	1	0	0	0	0	0	0	0	1	8661	477	17	4		4	LAMA3	18	21417017	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		21417017	56660231	149	68303										
ZNF396	0	genome.wustl.edu	37	chr18	32949307	32949307	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggttcgtcgatgctgaatcaGaattgcgcttcggctgaatg	13	8	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	18	32949307	32949307	G	C	SNP	ZNF396	ENST00000589332	human	ensembl	69_37n	-1	known	missense	c.880	p.L294V	0.977	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF396	HGNC	ENSG00000186496	89	0	0	14	27	65.85	-	-	-	C	32949307	G	C	32949307	3	2	805	1	0	0	0	0	1	0	0	0	17978	933	33	2	129	2	ZNF396	18	32949307	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	11532290	32949307	45127941	150	68304										
ABCA7	0	genome.wustl.edu	37	chr19	1045035	1045035	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	caagctggaggcggcaccctCagaggcagccctggtgtcgc	15	14	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	1045035	1045035	C	G	SNP	ABCA7	ENST00000263094	human	ensembl	69_37n	1	known	nonsense	c.1250	p.S417*	0.003	NULL	pfam_ABC_transporter-like,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	46	0	0	8	10	55.56	-	-	-	G	1045035	C	G	1045035	4	3	805	1	0	0	0	0	0	1	0	0	37	838	29	2	1292	2	ABCA7	19	1045035	Nonsense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		1045035	58083948	151	68305										
CIRBP	0	genome.wustl.edu	37	chr19	1272306	1272306	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gtgtggccgcaggccagcctCcctcggctgtggggggtggt	19	12	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	1272306	1272306	C	G	SNP	CIRBP	ENST00000444172	human	ensembl	69_37n	1	known	missense	c.599	p.S200C	0.128	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622	36	0	0	34	11	24.44	-	-	-	G	1272306	C	G	1272306	3	3	805	1	0	0	0	0	1	0	0	0	3462	870	30	2		2	CIRBP	19	1272306	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	227271	1272306	57856677	152	68306										
APC2	0	genome.wustl.edu	37	chr19	1465771	1465771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcgcaccccgcccacccgccGaggcggcaaggaggcagaga	14	17	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	1465771	1465771	G	A	SNP	APC2	ENST00000233607	human	ensembl	69_37n	1	known	missense	c.2471	p.R824Q	0.024	NULL	pfam_APC_basic_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	16	0	0	5	4	44.44	-	-	-	A	1465771	G	A	1465771	3	1	805	1	0	0	0	0	1	0	0	0	765	1058	37	1	2525	1	APC2	19	1465771	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	193465	1465771	57663212	153	68307										
APBA3	0	genome.wustl.edu	37	chr19	3759707	3759707	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctgggcaccagcgggtggctCttcaggtgtgactagaggca	16	10	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	3759707	3759707	C	T	SNP	APBA3	ENST00000316757	human	ensembl	69_37n	-1	known	missense	c.556	p.E186K	0.059	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA3	HGNC	ENSG00000011132	10	0	0	10	7	41.18	-	-	-	T	3759707	C	T	3759707	3	4	805	1	0	0	0	0	1	0	0	0	759	922	32	2	1211	2	APBA3	19	3759707	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2293936	3759707	55369276	154	68308										
RFXANK	0	genome.wustl.edu	37	chr19	19312527	19312527	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtgcccgctgaccctgagtGaaggccgcctgccggggact	16	14	0	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	19312527	19312527	G	A	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	silent	c.782	p.*261	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	56	0	0	21	8	27.59	-	-	-	A	19312527	G	A	19312527	2	1	805	1	0	0	0	0	0	0	0	1	13352	1285	45	2		2	RFXANK	19	19312527	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	15552820	19312527	39816456	155	68309										
ZNF536	0	genome.wustl.edu	37	chr19	31039733	31039733	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ctgggcctctccaatatgatCagctctctagactctgcttc	7	14	4	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	31039733	31039733	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.3207	p.I1069	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	52	0	0	25	29	53.7	-	-	-	T	31039733	C	T	31039733	2	4	805	1	0	0	0	0	0	0	0	1	18070	816	29	2		2	ZNF536	19	31039733	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	11727206	31039733	28089250	156	68310										
SUPT5H	0	genome.wustl.edu	37	chr19	39955656	39955656	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccaaagtcctgggtccgcctCaagcggggcatctacaagga	12	13	2	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	39955656	39955656	C	G	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	silent	c.843	p.L281	1.000	smart_KOW,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	37	0	0	21	12	36.36	-	-	-	G	39955656	C	G	39955656	2	3	805	1	0	0	0	0	0	0	0	1	15490	813	29	2		2	SUPT5H	19	39955656	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	8915923	39955656	19173327	157	68311										
ZNF235	0	genome.wustl.edu	37	chr19	44791480	44791480	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcctctctccagtgtggactCtctggtgtgtgtgaaaatgt	12	9	2	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	44791480	44791480	C	G	SNP	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	missense	c.2108	p.R703T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	146	0	0	133	44	24.86	-	-	-	G	44791480	C	G	44791480	3	3	805	1	0	0	0	0	1	0	0	0	17884	913	32	2	112	2	ZNF235	19	44791480	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	4835824	44791480	14337503	158	68312										
CEACAM16	0	genome.wustl.edu	37	chr19	45209092	45209092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acatgtattgcgaagaacacCaagaccctgctatctggatc	8	11	1	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	45209092	45209092	C	T	SNP	CEACAM16	ENST00000405314	human	ensembl	69_37n	1	known	silent	c.894	p.T298	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM16	HGNC	ENSG00000213892	97	0	0	87	26	22.81	-	-	-	T	45209092	C	T	45209092	2	4	805	1	0	0	0	0	0	0	0	1	3217	581	21	4		4	CEACAM16	19	45209092	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	417612	45209092	13919891	159	68313										
NUCB1	0	genome.wustl.edu	37	chr19	49424449	49424449	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gcctacaccgaggaagagctGaggcgctttgaagaggagct	15	9	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	49424449	49424449	G	A	SNP	NUCB1	ENST00000263273	human	ensembl	69_37n	1	known	silent	c.1041	p.L347	0.991	NULL	pfscan_EF_HAND_2	-	no_errors	NUCB1	HGNC	ENSG00000104805	24	0	0	12	6	31.58	-	-	-	A	49424449	G	A	49424449	2	1	805	1	0	0	0	0	0	0	0	1	10791	1277	45	2		2	NUCB1	19	49424449	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	4215357	49424449	9704534	160	68314										
CCDC155	0	genome.wustl.edu	37	chr19	49902741	49902741	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	agcagcagcatctggtggctGagatggagactctgcaggag	16	8	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	49902741	49902741	G	C	SNP	CCDC155	ENST00000447857	human	ensembl	69_37n	1	known	missense	c.775	p.E259Q	0.853	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	145	0	0	98	38	27.74	-	-	-	C	49902741	G	C	49902741	3	2	805	1	0	0	0	0	1	0	0	0	2814	1291	45	2	805	2	CCDC155	19	49902741	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	478292	49902741	9226242	161	68315										
SCAF1	0	genome.wustl.edu	37	chr19	50161137	50161137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aaggacatcctgaggaaggcCgtccacaaggtgggcacccg	14	12	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	50161137	50161137	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	69_37n	1	known	silent	c.3738	p.A1246	0.621	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461	51	0	0	39	49	54.44	-	-	-	T	50161137	C	T	50161137	2	4	805	1	0	0	0	0	0	0	0	1	13955	639	23	1		1	SCAF1	19	50161137	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	258396	50161137	8967846	162	68316										
ZNF432	0	genome.wustl.edu	37	chr19	52537854	52537854	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	atttcgttgatgtatgatgaCatagtgttttgtggtgaagc	12	3	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	19	52537854	52537854	C	G	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.1078	p.V360L	0.019	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	74	0	0	98	30	23.44	-	-	-	G	52537854	C	G	52537854	3	3	805	1	0	0	0	0	1	0	0	0	18002	478	17	4	884	4	ZNF432	19	52537854	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	2376717	52537854	6591129	163	68317										
IDH3B	0	genome.wustl.edu	37	chr20	2640352	2640352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcccatgacctacttaagatGccgcagcatgttggaagccg	10	12	0	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	2640352	2640352	G	C	SNP	IDH3B	ENST00000380843	human	ensembl	69_37n	-1	known	missense	c.1003	p.H335D	0.998	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3B	HGNC	ENSG00000101365	96	0	0	94	12	11.21	-	-	-	C	2640352	G	C	2640352	3	2	805	1	0	0	0	0	1	0	0	0	7551	1319	46	4	251	4	IDH3B	20	2640352	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		2640352	60385168	164	68318										
SGK2	0	genome.wustl.edu	37	chr20	42204933	42204933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	accagccgctacagatccccGgaggccggacagtggccgcc	13	17	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	42204933	42204933	G	A	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	1	known	missense	c.943	p.G315R	0.933	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	86	0	0	57	22	27.85	-	-	-	A	42204933	G	A	42204933	3	1	805	1	0	0	0	0	1	0	0	0	14297	1117	39	1	981	1	SGK2	20	42204933	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	39564581	42204933	20820587	165	68319										
STK4	0	genome.wustl.edu	37	chr20	43615911	43615911	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	aaggacatgcaaaacttgcaGattttggggtagcaggtcaa	12	6	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	43615911	43615911	G	A	SNP	STK4	ENST00000372806	human	ensembl	69_37n	1	known	missense	c.499	p.D167N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SARAH,pfscan_Prot_kinase_cat_dom	-	no_errors	STK4	HGNC	ENSG00000101109	85	0	0	64	50	43.86	-	-	-	A	43615911	G	A	43615911	3	1	805	1	0	0	0	0	1	0	0	0	15397	942	33	2	517	2	STK4	20	43615911	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1410978	43615911	19409609	166	68320										
SLC12A5	0	genome.wustl.edu	37	chr20	44684870	44684870	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggctccgcctgaacgtcccaGaagagacggctggtgacagt	14	12	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	44684870	44684870	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2938	p.E980K	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	84	0	0	92	16	14.81	-	-	-	A	44684870	G	A	44684870	3	1	805	1	0	0	0	0	1	0	0	0	14475	943	33	2	3080	2	SLC12A5	20	44684870	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	1068959	44684870	18340650	167	68321										
BCAS4	0	genome.wustl.edu	37	chr20	49493134	49493134	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	accacccccgcacctgccctCggcctttgtgagctttgtgg	10	17	0	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	49493134	49493134	C	T	SNP	BCAS4	ENST00000371608	human	ensembl	69_37n	1	known	missense	c.601	p.R201W	0.000	NULL	NULL	-	no_errors	BCAS4	HGNC	ENSG00000124243	35	0	0	57	8	12.31	-	-	-	T	49493134	C	T	49493134	3	4	805	1	0	0	0	0	1	0	0	0	1357	875	31	1	720	1	BCAS4	20	49493134	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	4808264	49493134	13532386	168	68322										
ATP9A	0	genome.wustl.edu	37	chr20	50286620	50286620	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gttccgagatggagccgtttGaaaatcatctcgttctgggt	12	8	3	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	50286620	50286620	G	C	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.1209	p.F403L	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	113	0	0	192	35	15.35	-	-	-	C	50286620	G	C	50286620	3	2	805	1	0	0	0	0	1	0	0	0	1202	1281	45	2	1998	2	ATP9A	20	50286620	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	793486	50286620	12738900	169	68323										
COL9A3	0	genome.wustl.edu	37	chr20	61458148	61458148	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	gggttccgagggccgcctggGatcccaggagcgcctgggaa	18	12	0	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	61458148	61458148	G	A	SNP	COL9A3	ENST00000343916	human	ensembl	69_37n	1	known	silent	c.768	p.G256	0.876	NULL	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	36	0	0	28	10	25.64	-	-	-	A	61458148	G	A	61458148	2	1	805	1	0	0	0	0	0	0	0	1	3739	1161	41	2		2	COL9A3	20	61458148	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	11171528	61458148	1567372	170	68324										
RTEL1	0	genome.wustl.edu	37	chr20	62293270	62293270	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tcgcaactcacacaggtcatCaacgagcttcggaacacctc	7	15	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	20	62293270	62293270	C	T	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	silent	c.369	p.I123	0.053	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	141	0	0	173	43	19.82	-	-	-	T	62293270	C	T	62293270	2	4	805	1	0	0	0	0	0	0	0	1	13806	816	29	2		2	RTEL1	20	62293270	Silent	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	835122	62293270	732250	171	68325										
SYNJ1	0	genome.wustl.edu	37	chr21	34012090	34012090	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccagcacgaggaggaatcgtCtacagataggaaacataaca	10	9	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	21	34012090	34012090	C	G	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	splice_site	c.3706-1	e30-1	0.996	-	-	-	no_errors	SYNJ1	HGNC	ENSG00000159082	93	0	0	46	35	43.21	-	-	-	G	34012090	C	G	34012090	5	3	805	1	0	0	0	0	0	0	1	0	15544	927	32	2	1170	2	SYNJ1	21	34012090	Splice_Site	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		34012090	14117805	172	68326										
DEPDC5	0	genome.wustl.edu	37	chr22	32180825	32180825	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttgtattttgagaaagctgtGaatggtttccttgctgatct	10	5	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	22	32180825	32180825	G	T	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	silent	c.588	p.V196	1.000	pfam_DUF3608	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	272	1	0.37	109	85	43.81	-	-	-	T	32180825	G	T	32180825	2	4	805	1	0	0	0	0	0	0	0	1	4478	1277	45	2		2	DEPDC5	22	32180825	Silent	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09		32180825	19123741	173	68327										
APOL6	0	genome.wustl.edu	37	chr22	36054859	36054859	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggctaacatggtggccacctCtactgctgtcatctctggag	11	12	3	0			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	22	36054859	36054859	C	G	SNP	APOL6	ENST00000409652	human	ensembl	69_37n	1	known	missense	c.248	p.S83C	0.365	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963	139	0	0	63	10	13.7	-	-	-	G	36054859	C	G	36054859	3	3	805	1	0	0	0	0	1	0	0	0	812	913	32	2	254	2	APOL6	22	36054859	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	3874034	36054859	15249707	174	68328										
PKDREJ	0	genome.wustl.edu	37	chr22	46656331	46656331	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ggtcccactgtgagattaaaAgctgcaaaggtcaagttttt	10	7	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	22	46656331	46656331	A	T	SNP	PKDREJ	ENST00000253255	human	ensembl	69_37n	-1	known	silent	c.2889	p.A963	0.001	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	52	0	0	18	19	50	-	-	-	T	46656331	A	T	46656331	2	4	805	1	0	0	0	0	0	0	0	1	12044	59	3	5		5	PKDREJ	22	46656331	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	10601472	46656331	4648235	175	68329										
MOSPD2	0	genome.wustl.edu	37	chrX	14915213	14915213	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cttctgcttaaagtctggatCagggtgaagtatcatgtaaa	10	6	4	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	14915213	14915213	C	G	SNP	MOSPD2	ENST00000380492	human	ensembl	69_37n	1	known	missense	c.330	p.I110M	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_Major_sperm,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_Major_sperm	-	no_errors	MOSPD2	HGNC	ENSG00000130150	99	0	0	80	29	26.61	-	-	-	G	14915213	C	G	14915213	3	3	805	1	0	0	0	0	1	0	0	0	9788	816	29	2	348	2	MOSPD2	23	14915213	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09		14915213	140355347	176	68330										
PTCHD1	0	genome.wustl.edu	37	chrX	23397794	23397794	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	tgtatcctgaataatgataaGacttgcatcgtggatgacat	9	6	0	4			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	23397794	23397794	G	C	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	1	known	missense	c.438	p.K146N	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	64	0	0	71	18	20.22	-	-	-	C	23397794	G	C	23397794	3	2	805	1	0	0	0	0	1	0	0	0	12812	933	33	2	444	2	PTCHD1	23	23397794	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	8482581	23397794	131872766	177	68331										
GNL3L	0	genome.wustl.edu	37	chrX	54586952	54586952	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	cctgtatttctccatttgcaGataaaatcgccagcaagctg	7	11	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	54586952	54586952	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	splice_site	c.1667-1	e15-1	1.000	-	-	-	no_errors	GNL3L	HGNC	ENSG00000130119	221	0	0	141	45	24.06	-	-	-	A	54586952	G	A	54586952	5	1	805	1	0	0	0	0	0	0	1	0	6590	956	33	2	1724	2	GNL3L	23	54586952	Splice_Site	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	31189158	54586952	100683608	178	68332										
ODZ1	0	genome.wustl.edu	37	chrX	123539030	123539030	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ccctgccaggatgtggggctCtgagctgaggccgatctcca	14	13	2	2			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	123539030	123539030	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.5242	p.E1748K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	110	1	0.9	37	38	50	-	-	-	T	123539030	C	T	123539030	3	4	805	1	0	0	0	0	1	0	0	0	10907	922	32	2	2980	2	ODZ1	23	123539030	Missense_Mutation	SNP	C	TCGA-E2-A1IN-01A-11D-A13L-09	68952078	123539030	31731530	179	68333										
DCAF12L2	0	genome.wustl.edu	37	chrX	125298870	125298870	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	acgcctgtgccaccctctcgAgagcacaggggccggatgtt	13	14	1	1			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	125298870	125298870	A	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	69_37n	-1	known	silent	c.1038	p.S346	0.471	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	21	0	0	6	4	40	-	-	-	T	125298870	A	T	125298870	2	4	805	1	0	0	0	0	0	0	0	1	4297	291	11	5		5	DCAF12L2	23	125298870	Silent	SNP	A	TCGA-E2-A1IN-01A-11D-A13L-09	1759840	125298870	29971690	180	68334										
PHF6	0	genome.wustl.edu	37	chrX	133547523	133547523	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.55	99	7.55286937694144e-43	4.53054915747363	4.93396868618108	4.20681743690593	0.779425934789236	1	77	ttgttcatttttaagcagctGatttagaagaaagttttaat	7	3	1	3			TCGA-E2-A1IN-01A-11D-A13L-09	TCGA-E2-A1IN-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e85559f-098e-4b0f-8034-4798789e710b	8dd6fca4-007f-45de-a569-bfb899254977	X	133547523	133547523	G	A	SNP	PHF6	ENST00000394292	human	ensembl	69_37n	1	known	missense	c.424	p.D142N	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF6	HGNC	ENSG00000156531	96	0	0	36	30	45.45	-	-	-	A	133547523	G	A	133547523	3	1	805	1	0	0	0	0	1	0	0	0	11912	1290	45	2	442	2	PHF6	23	133547523	Missense_Mutation	SNP	G	TCGA-E2-A1IN-01A-11D-A13L-09	8248653	133547523	21723037	181	68335										
IL22RA1	0	genome.wustl.edu	37	chr1	24465129	24465129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	cctccggcccgctgtcccacGtcaggatgttttcaaagttg	10	14	2	0			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	24465129	24465129	G	A	SNP	IL22RA1	ENST00000270800	human	ensembl	69_37n	-1	known	missense	c.119	p.T40M	0.992	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677	42	0	0	32	7	17.95	-	-	-	A	24465129	G	A	24465129	3	1	806	1	0	0	0	0	1	0	0	0	7727	1145	40	1	1629	1	IL22RA1	1	24465129	Missense_Mutation	SNP	G	TCGA-E2-A1IO-01A-11D-A142-09		24465129	224785492	1	68336										
CFHR5	0	genome.wustl.edu	37	chr1	196973889	196973889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	cagggtcaacagtgacgtacCgttgccagtccttctataaa	9	11	2	1			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	196973889	196973889	C	T	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	1	known	missense	c.1501	p.R501C	0.006	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	41	0	0	30	9	23.08	-	-	-	T	196973889	C	T	196973889	3	4	806	1	0	0	0	0	1	0	0	0	3317	652	23	1	1463	1	CFHR5	1	196973889	Missense_Mutation	SNP	C	TCGA-E2-A1IO-01A-11D-A142-09	172508760	196973889	52276732	2	68337										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0	29	8	21.62	-	-	-	A	178936082	G	A	178936082	3	1	806	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E2-A1IO-01A-11D-A142-09		178936082	19086348	3	68338										
FST	0	genome.wustl.edu	37	chr5	52781027	52781028	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	ctgctcctcaggtgtgctacINStggaagtaaagcactccgga							TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	52781027	52781028	-	T	INS	FST	ENST00000256759	human	ensembl	69_37n	1	known	frame_shift_ins	c.922_923	p.E309fs	0.993:1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	FST	HGNC	ENSG00000134363	30	0	0	44	7	13.73	-	-	-	T	52781028	-	T	52781027	7	5	806	1	0	1	1	0	0	0	0	0	6125	564	20	0	940	0	FST	5	52781027	Frame_Shift_Ins	INS	-	TCGA-E2-A1IO-01A-11D-A142-09		52781027	128134233	4	68339										
PCDHB15	0	genome.wustl.edu	37	chr5	140626431	140626431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	ccatcacagacttggggactCcaaggctgaaaaccgagcag	11	12	1	2			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	140626431	140626431	C	A	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	1	known	missense	c.1285	p.P429T	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	50	0	0	12	5	29.41	-	-	-	A	140626431	C	A	140626431	3	1	806	1	0	0	0	0	1	0	0	0	11613	855	30	2	1287	2	PCDHB15	5	140626431	Missense_Mutation	SNP	C	TCGA-E2-A1IO-01A-11D-A142-09	87845404	140626431	40288829	5	68340										
FAM135B	0	genome.wustl.edu	37	chr8	139164616	139164616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	gcaactccagagccctgcttCgggcctctgaccaggcgacg	12	16	1	2			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	8	139164616	139164616	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.2102	p.R701Q	0.863	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	23	0	0	9	5	35.71	-	-	-	T	139164616	C	T	139164616	3	4	806	1	0	0	0	0	1	0	0	0	5489	884	31	1	2150	1	FAM135B	8	139164616	Missense_Mutation	SNP	C	TCGA-E2-A1IO-01A-11D-A142-09		139164616	7199406	6	68341										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	tattgaaaaagaaagcaagtTcacatgccgttgataggctg	10	6	1	3			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	27	0	0	10	7	41.18	-	-	-	A	69390020	T	A	69390020	3	1	806	1	0	0	0	0	1	0	0	0	650	1783	62	5	588	5	ANKRD20A4	9	69390020	Missense_Mutation	SNP	T	TCGA-E2-A1IO-01A-11D-A142-09		69390020	71823411	7	68342										
SCGB1D4	0	genome.wustl.edu	37	chr11	62065069	62065069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	acttggaggtttaccgcagcGtcacttaagaataagaagac	10	8	1	3			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	11	62065069	62065069	G	A	SNP	SCGB1D4	ENST00000358585	human	ensembl	69_37n	-1	known	silent	c.117	p.D39	0.000	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB1D4	HGNC	ENSG00000197745	50	0	0	42	5	10.64	-	-	-	A	62065069	G	A	62065069	2	1	806	1	0	0	0	0	0	0	0	1	13985	1136	40	1		1	SCGB1D4	11	62065069	Silent	SNP	G	TCGA-E2-A1IO-01A-11D-A142-09		62065069	72941447	8	68343										
TPTE2	0	genome.wustl.edu	37	chr13	19999927	19999927	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	tcagtcgagcacaggtctccTggatggctcccccttccagt	10	15	2	0			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	13	19999927	19999927	T	G	SNP	TPTE2	ENST00000462409	human	ensembl	69_37n	-1	known	missense	c.956	p.Q319P	0.137	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	-	no_errors	TPTE2	HGNC	ENSG00000132958	33	0	0	8	5	38.46	-	-	-	G	19999927	T	G	19999927	3	3	806	1	0	0	0	0	1	0	0	0	16527	1595	55	5		5	TPTE2	13	19999927	Missense_Mutation	SNP	T	TCGA-E2-A1IO-01A-11D-A142-09		19999927	95169951	9	68344										
INTS6	0	genome.wustl.edu	37	chr13	51950260	51950260	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	cttgttaagtgatccaaaagAtttcgtcttggtatgtcata	8	6	2	2			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	13	51950260	51950260	A	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1653	p.N551K	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	52	0	0	14	12	46.15	-	-	-	T	51950260	A	T	51950260	3	4	806	1	0	0	0	0	1	0	0	0	7836	330	12	5	1034	5	INTS6	13	51950260	Missense_Mutation	SNP	A	TCGA-E2-A1IO-01A-11D-A142-09	31950333	51950260	63219618	10	68345										
TP53	0	genome.wustl.edu	37	chr17	7578278	7578279	+	Frame_Shift_Ins	INS	-	-	A													0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	actcggataagatgctgaggINSaggggccagacctaagagca							TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	7578278	7578279	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.571_570	p.P190fs	0.997:0.935	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	51	0	0	18	6	25	-	-	-	A	7578279	-	A	7578278	7	5	806	1	0	1	1	0	0	0	0	0	16477	1174	41	0	723	0	TP53	17	7578278	Frame_Shift_Ins	INS	-	TCGA-E2-A1IO-01A-11D-A142-09		7578278	73616932	11	68346										
MYH1	0	genome.wustl.edu	37	chr17	10415212	10415212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	aatgaagtactgcctgggctGcttggtgtccagctgctggt	14	9	0	1			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	10415212	10415212	G	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.1360	p.Q454K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	125	0	0	61	17	21.79	-	-	-	T	10415212	G	T	10415212	3	4	806	1	0	0	0	0	1	0	0	0	10101	1328	46	4	4567	4	MYH1	17	10415212	Missense_Mutation	SNP	G	TCGA-E2-A1IO-01A-11D-A142-09	2836934	10415212	70779998	12	68347										
ZNF207	0	genome.wustl.edu	37	chr17	30690005	30690005	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	atgcctggaatgccaccaggTatatgttagataatttcatt	8	7	1	1			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	30690005	30690005	T	C	SNP	ZNF207	ENST00000394670	human	ensembl	69_37n	1	known	splice_site	c.670+2	e7+2	1.000	-	-	-	no_errors	ZNF207	HGNC	ENSG00000010244	37	0	0	35	4	10.26	-	-	-	C	30690005	T	C	30690005	5	2	806	1	0	0	0	0	0	0	1	0	17861	1652	57	5	698	5	ZNF207	17	30690005	Splice_Site	SNP	T	TCGA-E2-A1IO-01A-11D-A142-09	20274793	30690005	50505205	13	68348										
U2AF1	0	genome.wustl.edu	37	chr21	44514780	44514780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	1	0.913683819682119	1.03333333333333	NA	1.03333333333333	1	1	0	ctcaccccatctcatactgaCggcagcaggcttctctgaag	8	15	3	2			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	21	44514780	44514780	C	T	SNP	U2AF1	ENST00000291552	human	ensembl	69_37n	-1	known	missense	c.467	p.R156H	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201	14	0	0	12	5	29.41	-	-	-	T	44514780	C	T	44514780	3	4	806	1	0	0	0	0	1	0	0	0	16918	536	19	1	267	1	U2AF1	21	44514780	Missense_Mutation	SNP	C	TCGA-E2-A1IO-01A-11D-A142-09		44514780	3615115	14	68349										
DOCK10	0	genome.wustl.edu	37	chr2	225662592	225662592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	aggcaaacacatgcttcagcGctgtggctgactgattgact	11	10	1	3			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	2	225662592	225662592	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.4601	p.A1534E	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	61	0	0	31	5	13.89	-	-	-	T	225662592	G	T	225662592	3	4	807	1	0	0	0	0	1	0	0	0	4720	1087	38	3	2019	3	DOCK10	2	225662592	Missense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09		225662592	17536781	1	68350										
C5orf56	0	genome.wustl.edu	37	chr5	131796262	131796262	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	tctctcaaccagggaatcttCaaactcttcttctccactgg	5	14	7	0			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	5	131796262	131796262	C	T	SNP	C5orf56	ENST00000337752	human	ensembl	69_37n	1	novel	nonsense	c.97	p.Q33*	0.001	NULL	NULL	-	no_errors	C5orf56	HGNC	ENSG00000197536	154	1	0.65	69	13	15.85	-	-	-	T	131796262	C	T	131796262	4	4	807	1	0	0	0	0	0	1	0	0	2333	827	29	2	107	2	C5orf56	5	131796262	Nonsense_Mutation	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09		131796262	49118998	2	68351										
FAM71B	0	genome.wustl.edu	37	chr5	156589497	156589497	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	aagacgatcatctccgtcttCtcggatgtcatagtgccact	8	12	5	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	5	156589497	156589497	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	silent	c.1779	p.E593	0.077	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	99	0	0	46	15	24.59	-	-	-	T	156589497	C	T	156589497	2	4	807	1	0	0	0	0	0	0	0	1	5653	912	32	2		2	FAM71B	5	156589497	Silent	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09	24793235	156589497	24325763	3	68352										
GMDS	0	genome.wustl.edu	37	chr6	1930370	1930370	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	ttggcatggccccaatctcgTttggcatccagatttcccaa	8	13	1	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	6	1930370	1930370	T	C	SNP	GMDS	ENST00000380815	human	ensembl	69_37n	-1	known	silent	c.738	p.K246	0.991	pfam_Epimerase_deHydtase,tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699	77	0	0	26	12	31.58	-	-	-	C	1930370	T	C	1930370	2	2	807	1	0	0	0	0	0	0	0	1	6538	1722	60	5		5	GMDS	6	1930370	Silent	SNP	T	TCGA-E2-A1IU-01A-11D-A14G-09		1930370	169184697	4	68353										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27805735	27805735	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	tccagccccgctacttgcccTtggccttgtggtggctctca	10	16	1	0			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	6	27805735	27805735	T	C	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.383	p.K128R	1.000	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	127	0	0	39	14	26.42	-	-	-	C	27805735	T	C	27805735	3	2	807	1	0	0	0	0	1	0	0	0	7188	1609	56	5	13	5	HIST1H2AK	6	27805735	Missense_Mutation	SNP	T	TCGA-E2-A1IU-01A-11D-A14G-09	25875365	27805735	143309332	5	68354										
TRA2A	0	genome.wustl.edu	37	chr7	23545185	23545185	+	Frame_Shift_Del	DEL	C	C	-													0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	aaccattccgttatcaatagCgtcctaaaagagaaaaagca							TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	7	23545185	23545185	C	-	DEL	TRA2A	ENST00000297071	human	ensembl	69_37n	-1	known	frame_shift_del	c.842	p.R281fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548	21	0	0	10	3	23.08	-	-	-	-	23545185	C	-	23545185	7	5	807	1	0	1	0	1	0	0	0	0	16529	768	27	0	10	0	TRA2A	7	23545185	Frame_Shift_Del	DEL	C	TCGA-E2-A1IU-01A-11D-A14G-09		23545185	135593478	6	68355										
CHD7	0	genome.wustl.edu	37	chr8	61766023	61766023	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	atgaagaggaaaagctggagGatgacgataagtcggaagag	16	3	0	4			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	8	61766023	61766023	G	T	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	1	known	missense	c.6739	p.D2247Y	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	34	0	0	14	12	46.15	-	-	-	T	61766023	G	T	61766023	3	4	807	1	0	0	0	0	1	0	0	0	3359	1174	41	2	6857	2	CHD7	8	61766023	Missense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09		61766023	84597999	7	68356										
EPPK1	0	genome.wustl.edu	37	chr8	144945188	144945188	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	tctgatcgaagtagccgcgcCggtaggccacgtccacgggc	14	14	1	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	8	144945188	144945188	C	G	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	missense	c.2234	p.R745P	0.854	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	90	0	0	35	5	12.2	-	-	-	G	144945188	C	G	144945188	3	3	807	1	0	0	0	0	1	0	0	0	5227	652	23	3	5032	3	EPPK1	8	144945188	Missense_Mutation	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09	83179165	144945188	1418834	8	68357										
TYRP1	0	genome.wustl.edu	37	chr9	12698600	12698600	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	aactctgtcttttctcaatgGcgagtggtctgtgactcctt	9	10	4	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	9	12698600	12698600	G	A	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	nonsense	c.858	p.W286*	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	112	0	0	38	8	17.39	-	-	-	A	12698600	G	A	12698600	4	1	807	1	0	0	0	0	0	1	0	0	16913	1212	42	4	868	4	TYRP1	9	12698600	Nonsense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09		12698600	128514831	9	68358										
ZNF462	0	genome.wustl.edu	37	chr9	109687060	109687060	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	actaatctacctgatgtgccGaacaagagtgcccccagccc	8	15	1	2			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	9	109687060	109687060	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.867	p.P289	0.936	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	47	0	0	17	4	19.05	-	-	-	A	109687060	G	A	109687060	2	1	807	1	0	0	0	0	0	0	0	1	18022	1045	37	1		1	ZNF462	9	109687060	Silent	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09	96988460	109687060	31526371	10	68359										
FAM160A2	0	genome.wustl.edu	37	chr11	6239328	6239328	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	gccagacgagatggtgtggaGggccggggtactgtcgtcac							TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	11	6239328	6239328	G	-	DEL	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	frame_shift_del	c.1530	p.S511fs	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	31	0	0	9	2	18.18	-	-	-	-	6239328	G	-	6239328	7	5	807	1	0	1	0	1	0	0	0	0	5509	987	35	0	1446	0	FAM160A2	11	6239328	Frame_Shift_Del	DEL	G	TCGA-E2-A1IU-01A-11D-A14G-09		6239328	128767188	11	68360										
EIF2B1	0	genome.wustl.edu	37	chr12	124110991	124110991	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	cccgacagcagcatctagcaCcacagtgacagggacgttga	11	13	1	2			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	12	124110991	124110991	C	G	SNP	EIF2B1	ENST00000424014	human	ensembl	69_37n	-1	known	missense	c.532	p.V178L	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361	104	0	0	29	28	49.12	-	-	-	G	124110991	C	G	124110991	3	3	807	1	0	0	0	0	1	0	0	0	5035	507	18	4	401	4	EIF2B1	12	124110991	Missense_Mutation	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09		124110991	9740904	12	68361										
ASXL3	0	genome.wustl.edu	37	chr18	31326555	31326555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	tgtagcatgcctggttgtacGataagagctgagtgaaagat	13	5	0	4			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	18	31326555	31326555	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.6743	p.R2248Q	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	67	0	0	31	7	17.95	-	-	-	A	31326555	G	A	31326555	3	1	807	1	0	0	0	0	1	0	0	0	1072	1058	37	1	6789	1	ASXL3	18	31326555	Missense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09		31326555	46750693	13	68362										
ZNF532	0	genome.wustl.edu	37	chr18	56586060	56586060	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	ataagctgaaggcactcggaGgggaaaactccagcaaaact	11	9	0	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	18	56586060	56586060	G	C	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	missense	c.541	p.G181R	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	36	0	0	15	6	28.57	-	-	-	C	56586060	G	C	56586060	3	2	807	1	0	0	0	0	1	0	0	0	18068	1000	35	4	543	4	ZNF532	18	56586060	Missense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09	25259505	56586060	21491188	14	68363										
PRKACA	0	genome.wustl.edu	37	chr19	14208444	14208444	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	aggggtgccgcacaaggtccAagtgcggcccttcacgcgct	14	14	1	0			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	19	14208444	14208444	A	T	SNP	PRKACA	ENST00000308677	human	ensembl	69_37n	-1	known	missense	c.589	p.W197R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	65	0	0	16	7	30.43	-	-	-	T	14208444	A	T	14208444	3	4	807	1	0	0	0	0	1	0	0	0	12578	130	5	5	482	5	PRKACA	19	14208444	Missense_Mutation	SNP	A	TCGA-E2-A1IU-01A-11D-A14G-09		14208444	44920539	15	68364										
C20orf72	0	genome.wustl.edu	37	chr20	17950658	17950658	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	gaagtggaccaagaaaaataCtctaatttagttcagtctgt	8	6	3	1			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	20	17950658	17950658	C	T	SNP	C20orf72	ENST00000377710	human	ensembl	69_37n	1	known	silent	c.156	p.Y52	0.229	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	C20orf72	HGNC	ENSG00000125871	36	0	0	22	6	21.43	-	-	-	T	17950658	C	T	17950658	2	4	807	1	0	0	0	0	0	0	0	1	2138	576	20	4		4	C20orf72	20	17950658	Silent	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09		17950658	45074862	16	68365										
TMPRSS2	0	genome.wustl.edu	37	chr21	42838079	42838079	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	accatgtggattagccgtctGcctgttcaaataggaaaaaa	9	8	2	0			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	21	42838079	42838079	G	T	SNP	TMPRSS2	ENST00000398585	human	ensembl	69_37n	-1	known	missense	c.1580	p.A527E	0.780	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_Srcr_rcpt,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_LDrepeatLR_classA_rpt,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS2	HGNC	ENSG00000184012	68	0	0	39	5	11.36	-	-	-	T	42838079	G	T	42838079	3	4	807	1	0	0	0	0	1	0	0	0	16342	1333	46	4	13	4	TMPRSS2	21	42838079	Missense_Mutation	SNP	G	TCGA-E2-A1IU-01A-11D-A14G-09		42838079	5291816	17	68366										
PFKL	0	genome.wustl.edu	37	chr21	45745847	45745847	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	gcctcacctgtttccagggtGgcgctccaaccccctttgac							TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	21	45745847	45745847	G	-	DEL	PFKL	ENST00000403390	human	ensembl	69_37n	1	known	frame_shift_del	c.2134	p.G712fs	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959	63	0	0	17	2	10.53	-	-	-	-	45745847	G	-	45745847	7	5	807	1	0	1	0	1	0	0	0	0	11838	1348	47	0	2071	0	PFKL	21	45745847	Frame_Shift_Del	DEL	G	TCGA-E2-A1IU-01A-11D-A14G-09	2907768	45745847	2384048	18	68367										
ZBED1	0	genome.wustl.edu	37	chrX	2407843	2407843	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.787168502551475	1.41224489795918	0	2.01749271137026	0.333333333333333	0.930327025915261	0	gacagcagcgcccccagcttCgggagctggaaggcctgctg	15	14	0	0			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	X	2407843	2407843	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	silent	c.918	p.P306	0.028	superfamily_RNaseH-like_dom	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	71	0	0	13	5	27.78	-	-	-	T	2407843	C	T	2407843	2	4	807	1	0	0	0	0	0	0	0	1	17614	871	31	1		1	ZBED1	23	2407843	Silent	SNP	C	TCGA-E2-A1IU-01A-11D-A14G-09		2407843	152862717	19	68368										
PER3	0	genome.wustl.edu	37	chr1	7890055	7890055	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	tcccatcctactgccagcgcTctgtccacaggatcgcctcc	7	19	1	0			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	17	0	0	58	17	22.37	-	-	-	A	7890055	T	A	7890055	2	1	808	1	0	0	0	0	0	0	0	1	11804	1538	54	5		5	PER3	1	7890055	Silent	SNP	T	TCGA-E2-A1L6-01A-11D-A13L-09		7890055	241360566	1	68369										
DCAF6	0	genome.wustl.edu	37	chr1	168032951	168032951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	tactttgaacattagaaggcCgctagtaaaaatggtttata	8	5	0	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	1	168032951	168032951	C	T	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	1	known	missense	c.2393	p.P798L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	57	0	0	128	23	15.23	-	-	-	T	168032951	C	T	168032951	3	4	808	1	0	0	0	0	1	0	0	0	4306	652	23	1	2242	1	DCAF6	1	168032951	Missense_Mutation	SNP	C	TCGA-E2-A1L6-01A-11D-A13L-09	160142896	168032951	81217670	2	68370										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0	73	13	15.12	-	-	-	G	178952085	A	G	178952085	3	3	808	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1L6-01A-11D-A13L-09		178952085	19070345	3	68371										
KCNK16	0	genome.wustl.edu	37	chr6	39283076	39283076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	agaatgcattcctgagagagGccagacgttcatggagctca	12	9	2	4			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	6	39283076	39283076	G	A	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	missense	c.793	p.P265S	0.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	60	0	0	86	31	26.5	-	-	-	A	39283076	G	A	39283076	3	1	808	1	0	0	0	0	1	0	0	0	8117	1203	42	4	301	4	KCNK16	6	39283076	Missense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09		39283076	131831991	4	68372										
PKD1L1	0	genome.wustl.edu	37	chr7	47969011	47969011	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	catgaagttatcagaatttcGagctaggatggccacaggag	12	7	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	7	47969011	47969011	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	nonsense	c.850	p.R284*	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	59	0	0	118	28	19.18	-	-	-	A	47969011	G	A	47969011	4	1	808	1	0	0	0	0	0	1	0	0	12038	1066	37	1	7903	1	PKD1L1	7	47969011	Nonsense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09		47969011	111169652	5	68373										
RP1L1	0	genome.wustl.edu	37	chr8	10469694	10469696	+	In_Frame_Del	DEL	CTG	CTG	-													0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	gcccggcttctgtgccttctCtgcccctgctgggatgaagt							TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	8	10469694	10469696	CTG	-	DEL	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	in_frame_del	c.1914_1912	p.Q638in_frame_del	0.000:0.000:0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	14	0	0	10	5	31.25	-	-	-	-	10469696	CTG	-	10469694	7	5	808	1	0	1	0	1	0	0	0	0	13619	912	32	0	5292	0	RP1L1	8	10469694	In_Frame_Del	DEL	CTG	TCGA-E2-A1L6-01A-11D-A13L-09		10469694	135894328	6	68374										
TMEM26	0	genome.wustl.edu	37	chr10	63191081	63191081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	tgatgttccttcagcctggaTactgcaatactaagaatggg	10	8	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	10	63191081	63191081	T	C	SNP	TMEM26	ENST00000399298	human	ensembl	69_37n	-1	known	missense	c.280	p.I94V	0.034	pfam_Transmembrane_26	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932	89	0	0	193	59	23.41	-	-	-	C	63191081	T	C	63191081	3	2	808	1	0	0	0	0	1	0	0	0	16246	1406	49	5	842	5	TMEM26	10	63191081	Missense_Mutation	SNP	T	TCGA-E2-A1L6-01A-11D-A13L-09		63191081	72343666	7	68375										
AP3M1	0	genome.wustl.edu	37	chr10	75885944	75885944	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	tgtatagctgccttgtgtggGtgtcaggttcatgttcagca	13	7	3	0			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	10	75885944	75885944	G	C	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.973	p.P325A	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	89	0	0	161	36	18.27	-	-	-	C	75885944	G	C	75885944	3	2	808	1	0	0	0	0	1	0	0	0	748	1261	44	4	295	4	AP3M1	10	75885944	Missense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09	12694863	75885944	59648803	8	68376										
IGSF9B	0	genome.wustl.edu	37	chr11	133790479	133790479	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	gctggggtctccagccccccGaaggggaattctggccggcc	15	15	2	0			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	11	133790479	133790479	G	A	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	silent	c.3141	p.F1047	0.819	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	14	0	0	13	4	23.53	-	-	-	A	133790479	G	A	133790479	2	1	808	1	0	0	0	0	0	0	0	1	7660	1049	37	1		1	IGSF9B	11	133790479	Silent	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09		133790479	1216037	9	68377										
BAZ2A	0	genome.wustl.edu	37	chr12	56997461	56997461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	ctacttcagaccgcccagttCgcttggccagaacagttttc	8	14	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	12	56997461	56997461	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.3068	p.R1023Q	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	39	0	0	74	27	26.73	-	-	-	T	56997461	C	T	56997461	3	4	808	1	0	0	0	0	1	0	0	0	1335	884	31	1	2701	1	BAZ2A	12	56997461	Missense_Mutation	SNP	C	TCGA-E2-A1L6-01A-11D-A13L-09		56997461	76854434	10	68378										
GCN1L1	0	genome.wustl.edu	37	chr12	120593147	120593147	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	agggcttcggcccctgcctgCcttacagccgcctcatgata	10	16	1	1			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	12	120593147	120593147	C	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.3528	p.R1176S	0.998	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	43	0	0	94	35	27.13	-	-	-	A	120593147	C	A	120593147	3	1	808	1	0	0	0	0	1	0	0	0	6349	738	26	4	4603	4	GCN1L1	12	120593147	Missense_Mutation	SNP	C	TCGA-E2-A1L6-01A-11D-A13L-09	63595686	120593147	13258748	11	68379										
TPPP2	0	genome.wustl.edu	37	chr14	21500170	21500170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	attgcgggacgggaagagatGactgacaacacaggctatgt	14	7	0	3			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	14	21500170	21500170	G	A	SNP	TPPP2	ENST00000321760	human	ensembl	69_37n	1	known	missense	c.447	p.M149I	0.001	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP2	HGNC	ENSG00000179636	43	0	0	106	26	19.55	-	-	-	A	21500170	G	A	21500170	3	1	808	1	0	0	0	0	1	0	0	0	16510	1290	45	2	457	2	TPPP2	14	21500170	Missense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09		21500170	85849370	12	68380										
ARID3B	0	genome.wustl.edu	37	chr15	74836605	74836605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	gggatgatgaagttgcagagGtggctgagaaagaaacccag	16	5	0	5			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	15	74836605	74836605	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	69_37n	1	known	missense	c.328	p.V110M	0.986	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361	99	0	0	184	23	11.11	-	-	-	A	74836605	G	A	74836605	3	1	808	1	0	0	0	0	1	0	0	0	919	1261	44	4	330	4	ARID3B	15	74836605	Missense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09		74836605	27694787	13	68381										
COASY	0	genome.wustl.edu	37	chr17	40715065	40715067	+	In_Frame_Del	DEL	GCT	GCT	-													0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	ttacgccaccagctgttacaGctgttgtccgcgactggcct							TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	17	40715065	40715067	GCT	-	DEL	COASY	ENST00000590958	human	ensembl	69_37n	1	known	in_frame_del	c.512_514	p.C173in_frame_del	1.000:0.998:1.000	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	27	0	0	44	13	22.81	-	-	-	-	40715067	GCT	-	40715065	7	5	808	1	0	1	0	1	0	0	0	0	3682	971	34	0	518	0	COASY	17	40715065	In_Frame_Del	DEL	GCT	TCGA-E2-A1L6-01A-11D-A13L-09		40715065	40480145	14	68382										
NEDD4L	0	genome.wustl.edu	37	chr18	56018246	56018246	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	ggctgggaagaaagaattcaCttggatggccgaacgtttta	13	6	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	18	56018246	56018246	C	T	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	1	known	silent	c.1677	p.H559	0.889	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	57	0	0	114	30	20.83	-	-	-	T	56018246	C	T	56018246	2	4	808	1	0	0	0	0	0	0	0	1	10383	564	20	4		4	NEDD4L	18	56018246	Silent	SNP	C	TCGA-E2-A1L6-01A-11D-A13L-09		56018246	22059002	15	68383										
SERPINB8	0	genome.wustl.edu	37	chr18	61650836	61650836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	agatttcagaggtactggatGctgggacagtcgatcccctg	13	9	1	2			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	18	61650836	61650836	G	A	SNP	SERPINB8	ENST00000353706	human	ensembl	69_37n	1	known	missense	c.448	p.A150T	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401	35	0	0	74	25	25.25	-	-	-	A	61650836	G	A	61650836	3	1	808	1	0	0	0	0	1	0	0	0	14195	1319	46	4	462	4	SERPINB8	18	61650836	Missense_Mutation	SNP	G	TCGA-E2-A1L6-01A-11D-A13L-09	5632590	61650836	16426412	16	68384										
IL27RA	0	genome.wustl.edu	37	chr19	14150592	14150592	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	aaacgccccccggctgggccCtgacgtggacttttccgagg	13	15	0	1			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	19	14150592	14150592	C	G	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	1	known	missense	c.404	p.P135R	0.005	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	15	0	0	37	20	35.09	-	-	-	G	14150592	C	G	14150592	3	3	808	1	0	0	0	0	1	0	0	0	7735	681	24	4	418	4	IL27RA	19	14150592	Missense_Mutation	SNP	C	TCGA-E2-A1L6-01A-11D-A13L-09		14150592	44978391	17	68385										
ABCD1	0	genome.wustl.edu	37	chrX	153005554	153005554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0555555555555556	1	0.99043758096535	0.685770750988142	0	0.838164251207729	1	1	0	ttgcccctgcaggtggaggaAggcatgcatctgctcatcac	12	12	3	0			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	X	153005554	153005554	A	G	SNP	ABCD1	ENST00000443684	human	ensembl	69_37n	1	known	missense	c.500	p.K167R	0.886	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCD1	HGNC	ENSG00000101986	37	0	0	48	11	18.64	-	-	-	G	153005554	A	G	153005554	3	3	808	1	0	0	0	0	1	0	0	0	60	69	3	5	1519	5	ABCD1	23	153005554	Missense_Mutation	SNP	A	TCGA-E2-A1L6-01A-11D-A13L-09		153005554	2265006	18	68386										
SPOCD1	0	genome.wustl.edu	37	chr1	32279574	32279574	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gtctggggcagcctcctgggCtgggttcctctggcctgtcc	15	14	2	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	32279574	32279574	C	A	SNP	SPOCD1	ENST00000360482	human	ensembl	69_37n	-1	known	missense	c.1361	p.S454I	0.053	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668	33	0	0	20	18	47.37	-	-	-	A	32279574	C	A	32279574	3	1	809	1	0	0	0	0	1	0	0	0	15169	797	28	4	2349	4	SPOCD1	1	32279574	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		32279574	216971047	1	68387										
C1orf173	0	genome.wustl.edu	37	chr1	75038741	75038741	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tgctttgtctgtctcaagcaCtgtgagcatcaaggcttgct	10	10	3	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	75038741	75038741	C	G	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.2653	p.V885L	0.018	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	55	0	0	94	28	22.95	-	-	-	G	75038741	C	G	75038741	3	3	809	1	0	0	0	0	1	0	0	0	2033	565	20	4	1943	4	C1orf173	1	75038741	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	42759167	75038741	174211880	2	68388										
CLCA4	0	genome.wustl.edu	37	chr1	87045132	87045132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cagcatccggaggtgcatttGtggtatcacaagtcccaagc	11	11	1	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	87045132	87045132	G	T	SNP	CLCA4	ENST00000370563	human	ensembl	69_37n	1	known	missense	c.2218	p.V740L	0.914	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602	31	0	0	22	13	37.14	-	-	-	T	87045132	G	T	87045132	3	4	809	1	0	0	0	0	1	0	0	0	3489	1377	48	4	2268	4	CLCA4	1	87045132	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	12006391	87045132	162205489	3	68389										
RXRG	0	genome.wustl.edu	37	chr1	165398021	165398021	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	aagtgctcctgagggtgggcCcatggcagaggtgatgactc	16	9	0	4			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	165398021	165398021	C	G	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	missense	c.232	p.G78R	1.000	pfam_DUF3345	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	20	0	0	21	10	32.26	-	-	-	G	165398021	C	G	165398021	3	3	809	1	0	0	0	0	1	0	0	0	13851	623	22	4	1195	4	RXRG	1	165398021	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	78352889	165398021	83852600	4	68390										
SCYL3	0	genome.wustl.edu	37	chr1	169857904	169857904	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tcttgcagtacagcgggataAacagcaagtccagagggtaa	12	8	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	169857904	169857904	A	C	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	silent	c.78	p.V26	0.576	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	52	0	0	98	38	27.74	-	-	-	C	169857904	A	C	169857904	2	2	809	1	0	0	0	0	0	0	0	1	14037	1	1	5		5	SCYL3	1	169857904	Silent	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	4459883	169857904	79392717	5	68391										
MYT1L	0	genome.wustl.edu	37	chr2	1805469	1805469	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gggcttcaaaaactgttaccTgagttctgagtttaatcata	8	7	3	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	1805469	1805469	T	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.3275	p.Q1092L	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	94	0	0	56	44	44	-	-	-	A	1805469	T	A	1805469	3	1	809	1	0	0	0	0	1	0	0	0	10179	1594	55	5	297	5	MYT1L	2	1805469	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09		1805469	241393904	6	68392										
TANC1	0	genome.wustl.edu	37	chr2	160019974	160019974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agagagcacgctgcccaaagCagaatcctcagctggagatg	12	11	1	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	160019974	160019974	C	T	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.863	p.A288V	0.889	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	22	0	0	16	13	44.83	-	-	-	T	160019974	C	T	160019974	3	4	809	1	0	0	0	0	1	0	0	0	15636	710	25	4	885	4	TANC1	2	160019974	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	158214505	160019974	83179399	7	68393										
NCKAP1	0	genome.wustl.edu	37	chr2	183800077	183800077	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	taaaattacaccaattattgTcatcctcttcaagacactgt	3	10	3	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	183800077	183800077	T	C	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.2740	p.T914A	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	64	0	0	52	24	31.58	-	-	-	C	183800077	T	C	183800077	3	2	809	1	0	0	0	0	1	0	0	0	10293	1667	58	5	692	5	NCKAP1	2	183800077	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09	23780103	183800077	59399296	8	68394										
MFSD6	0	genome.wustl.edu	37	chr2	191362340	191362340	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gtgaacaaaccagcctggggAgtcagctcttctccctgggt	12	12	3	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	191362340	191362340	A	C	SNP	MFSD6	ENST00000434582	human	ensembl	69_37n	1	novel	missense	c.673	p.S225R	0.971	NULL	pfam_MFS,pfam_MFS_enterobactin_exp_EntS,superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MFSD6	HGNC	ENSG00000151690	47	0	0	32	14	30.43	-	-	-	C	191362340	A	C	191362340	3	2	809	1	0	0	0	0	1	0	0	0	9606	291	11	5	2085	5	MFSD6	2	191362340	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	7562263	191362340	51837033	9	68395										
BRPF1	0	genome.wustl.edu	37	chr3	9781344	9781344	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cccagcaggctggcctttacAtgaagatggagcctgtgcgg	14	11	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	9781344	9781344	A	G	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	1	known	missense	c.1261	p.M421V	1.000	smart_Znf_PHD	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	15	0	0	19	8	28.57	-	-	-	G	9781344	A	G	9781344	3	3	809	1	0	0	0	0	1	0	0	0	1528	217	8	5	1267	5	BRPF1	3	9781344	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09		9781344	188241086	10	68396										
CRYBG3	0	genome.wustl.edu	37	chr3	97599998	97599998	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	aggtgttaaatcgtgactggAttcttcagaacagaaggcat	11	6	2	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	97599998	97599998	A	G	SNP	CRYBG3	ENST00000182096	human	ensembl	69_37n	1	known	missense	c.1243	p.I415V	0.938	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200	48	0	0	23	25	52.08	-	-	-	G	97599998	A	G	97599998	3	3	809	1	0	0	0	0	1	0	0	0	3943	333	12	5	1257	5	CRYBG3	3	97599998	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	87818654	97599998	100422432	11	68397										
MORC1	0	genome.wustl.edu	37	chr3	108723692	108723692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tcttcaggcacccttcagttGgttgagctctccagacagtg	10	12	4	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	108723692	108723692	G	T	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.2057	p.P686Q	0.001	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	37	0	0	33	8	19.51	-	-	-	T	108723692	G	T	108723692	3	4	809	1	0	0	0	0	1	0	0	0	9773	1348	47	4	933	4	MORC1	3	108723692	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	11123694	108723692	89298738	12	68398										
DNAJB8	0	genome.wustl.edu	37	chr3	128181838	128181838	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agccggtgtcgaaggggctgTggtagggcgtgctggccccg	20	10	0	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	128181838	128181838	T	A	SNP	DNAJB8	ENST00000319153	human	ensembl	69_37n	-1	known	missense	c.251	p.H84L	0.036	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB8	HGNC	ENSG00000179407	34	0	0	14	20	57.14	-	-	-	A	128181838	T	A	128181838	3	1	809	1	0	0	0	0	1	0	0	0	4661	1696	59	5	451	5	DNAJB8	3	128181838	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09	19458146	128181838	69840592	13	68399										
ABCF3	0	genome.wustl.edu	37	chr3	183905745	183905745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tcctatgatgtgcgaattgaGaactttgatgtgtcttttgg	11	5	1	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	183905745	183905745	G	C	SNP	ABCF3	ENST00000429586	human	ensembl	69_37n	1	known	missense	c.543	p.E181D	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204	50	0	0	50	13	20	-	-	-	C	183905745	G	C	183905745	3	2	809	1	0	0	0	0	1	0	0	0	67	933	33	2	565	2	ABCF3	3	183905745	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	55723907	183905745	14116685	14	68400										
MFSD7	0	genome.wustl.edu	37	chr4	678308	678308	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gcacagaggatctgctccagGagggctgagaagctggcaga	16	9	1	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	678308	678308	G	A	SNP	MFSD7	ENST00000404286	human	ensembl	69_37n	-1	known	silent	c.807	p.L269	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026	19	0	0	12	11	47.83	-	-	-	A	678308	G	A	678308	2	1	809	1	0	0	0	0	0	0	0	1	9608	1161	41	2		2	MFSD7	4	678308	Silent	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09		678308	190475968	15	68401										
LPHN3	0	genome.wustl.edu	37	chr4	62542579	62542579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ccagtgtgcagtggtggcagGtcctgatgtttttccagacc	13	10	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	62542579	62542579	G	T	SNP	LPHN3	ENST00000507625	human	ensembl	69_37n	1	known	missense	c.509	p.G170V	1.000	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	86	0	0	49	27	35.53	-	-	-	T	62542579	G	T	62542579	3	4	809	1	0	0	0	0	1	0	0	0	8983	1261	44	4	315	4	LPHN3	4	62542579	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	61864271	62542579	128611697	16	68402										
MUC7	0	genome.wustl.edu	37	chr4	71347316	71347316	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gagaccacagctgccccaccCacaccttctgcaactacacc	5	20	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	71347316	71347316	C	A	SNP	MUC7	ENST00000304887	human	ensembl	69_37n	1	known	silent	c.855	p.P285	0.015	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195	256	0	0	123	17	12.06	-	-	-	A	71347316	C	A	71347316	2	1	809	1	0	0	0	0	0	0	0	1	10053	581	21	4		4	MUC7	4	71347316	Silent	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	8804737	71347316	119806960	17	68403										
PCDHB7	0	genome.wustl.edu	37	chr5	140553041	140553041	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gggaagagataccagagttcAgtttaaccctcaccgcttta	9	10	2	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	5	140553041	140553041	A	G	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.625	p.S209G	0.108	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	18	0	0	17	11	39.29	-	-	-	G	140553041	A	G	140553041	3	3	809	1	0	0	0	0	1	0	0	0	11620	188	7	5	627	5	PCDHB7	5	140553041	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09		140553041	40362219	18	68404										
PCDHB7	0	genome.wustl.edu	37	chr5	140554394	140554394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cggccaccgccacgctgcacGtgctcctggtggacggcttc	13	17	0	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	5	140554394	140554394	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.1978	p.V660M	0.649	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	26	0	0	34	6	15	-	-	-	A	140554394	G	A	140554394	3	1	809	1	0	0	0	0	1	0	0	0	11620	1145	40	1	1980	1	PCDHB7	5	140554394	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	1353	140554394	40360866	19	68405										
SGK1	0	genome.wustl.edu	37	chr6	134494418	134494418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agcacatctcatacctctttCtttttcaggattgctttctt	4	11	5	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	134494418	134494418	C	G	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	missense	c.696	p.K232N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	70	0	0	62	28	31.11	-	-	-	G	134494418	C	G	134494418	3	3	809	1	0	0	0	0	1	0	0	0	14295	912	32	2	916	2	SGK1	6	134494418	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		134494418	36620649	20	68406										
AHI1	0	genome.wustl.edu	37	chr6	135787286	135787286	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agtttccggtttcaggtcttGtgtagtcaactggggcaccg	13	9	3	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	135787286	135787286	G	A	SNP	AHI1	ENST00000265602	human	ensembl	69_37n	-1	known	nonsense	c.415	p.Q139*	0.006	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541	119	0	0	118	15	11.28	-	-	-	A	135787286	G	A	135787286	4	1	809	1	0	0	0	0	0	1	0	0	413	1386	48	4	3324	4	AHI1	6	135787286	Nonsense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	1292868	135787286	35327781	21	68407										
FNDC1	0	genome.wustl.edu	37	chr6	159653643	159653643	+	Frame_Shift_Del	DEL	C	C	-													0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agcctcgccggcccggaggaCcccccattcaggggccgcag							TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	159653643	159653643	C	-	DEL	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	frame_shift_del	c.2099	p.H702fs	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	8	0	0	9	4	30.77	-	-	-	-	159653643	C	-	159653643	7	5	809	1	0	1	0	1	0	0	0	0	6014	507	18	0	2141	0	FNDC1	6	159653643	Frame_Shift_Del	DEL	C	TCGA-E2-A1L7-01A-11D-A142-09	23866357	159653643	11461424	22	68408										
RSPH10B	0	genome.wustl.edu	37	chr7	6005323	6005323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cttctccctcatacagcccaCgaaccttttccccttcatag	3	18	3	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	7	6005323	6005323	C	T	SNP	RSPH10B	ENST00000337579	human	ensembl	69_37n	-1	known	missense	c.275	p.R92H	0.005	pfam_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH10B	HGNC	ENSG00000155026	10	0	0	4	13	76.47	-	-	-	T	6005323	C	T	6005323	3	4	809	1	0	0	0	0	1	0	0	0	13789	536	19	1	2409	1	RSPH10B	7	6005323	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		6005323	153133340	23	68409										
ANXA13	0	genome.wustl.edu	37	chr8	124724944	124724944	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ctttgcaggctttgttcagcTttttggcatctcgatccaca	8	11	2	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	8	124724944	124724944	T	G	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	missense	c.188	p.K63T	0.935	pfam_Annexin_repeat,superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	65	0	0	131	32	19.51	-	-	-	G	124724944	T	G	124724944	3	3	809	1	0	0	0	0	1	0	0	0	716	1609	56	5	925	5	ANXA13	8	124724944	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09		124724944	21639078	24	68410										
RUSC2	0	genome.wustl.edu	37	chr9	35558483	35558483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	atccaccaaggtcctgcatgGcctctacaacaaagtcagcc	7	15	2	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	35558483	35558483	G	T	SNP	RUSC2	ENST00000361226	human	ensembl	69_37n	1	known	missense	c.3260	p.G1087V	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853	38	0	0	25	22	45.83	-	-	-	T	35558483	G	T	35558483	3	4	809	1	0	0	0	0	1	0	0	0	13837	1203	42	4	3286	4	RUSC2	9	35558483	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09		35558483	105654948	25	68411										
SEMA4D	0	genome.wustl.edu	37	chr9	91978680	91978680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tctcatcacagcaacctgcaCcttcgaagtcttgttccctg	6	15	3	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	91978680	91978680	C	T	SNP	SEMA4D	ENST00000343780	human	ensembl	69_37n	-1	known	missense	c.2068	p.V690M	0.013	pfscan_Ig-like	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	29	0	0	19	12	38.71	-	-	-	T	91978680	C	T	91978680	3	4	809	1	0	0	0	0	1	0	0	0	14122	507	18	4	160	4	SEMA4D	9	91978680	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	56420197	91978680	49234751	26	68412										
PAPPA	0	genome.wustl.edu	37	chr9	118974155	118974155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cccagggccaggaaatgacaCctgtggctttcatagcttct	10	12	2	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	118974155	118974155	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.1862	p.T621I	0.998	pfam_Peptidase_M43	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	16	0	0	19	4	17.39	-	-	-	T	118974155	C	T	118974155	3	4	809	1	0	0	0	0	1	0	0	0	11505	507	18	4	1876	4	PAPPA	9	118974155	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	26995475	118974155	22239276	27	68413										
PAPPA	0	genome.wustl.edu	37	chr9	118997528	118997528	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gccctgagcctcaaggctgcTacctcgagctggagttcctc	11	15	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	118997528	118997528	T	C	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.2344	p.Y782H	1.000	superfamily_Fibronectin_type3	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	20	0	0	3	11	78.57	-	-	-	C	118997528	T	C	118997528	3	2	809	1	0	0	0	0	1	0	0	0	11505	1522	53	5	2370	5	PAPPA	9	118997528	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09	23373	118997528	22215903	28	68414										
HSPA14	0	genome.wustl.edu	37	chr10	14909121	14909121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cttctcgaatcccaaagctaCagcaactgattaaagatctt	5	11	2	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	10	14909121	14909121	C	G	SNP	HSPA14	ENST00000378372	human	ensembl	69_37n	1	known	missense	c.1033	p.Q345E	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	52	0	0	45	24	34.78	-	-	-	G	14909121	C	G	14909121	3	3	809	1	0	0	0	0	1	0	0	0	7460	479	17	4	1075	4	HSPA14	10	14909121	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		14909121	120625626	29	68415										
TRMT112	0	genome.wustl.edu	37	chr11	64084394	64084394	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tcccgcggctgatggggaacAtacgtccagattccgggcac	13	13	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	11	64084394	64084394	A	C	SNP	TRMT112	ENST00000544844	human	ensembl	69_37n	-1	known	missense	c.317	p.M106R	0.935	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	TRMT112	HGNC	ENSG00000173113	20	0	0	24	15	38.46	-	-	-	C	64084394	A	C	64084394	3	2	809	1	0	0	0	0	1	0	0	0	16659	217	8	5	64	5	TRMT112	11	64084394	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09		64084394	70922122	30	68416										
KCNA1	0	genome.wustl.edu	37	chr12	5021319	5021319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	acatcatgaacttcatagacAttgtggccatcattccttat	5	10	3	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	5021319	5021319	A	G	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.775	p.I259V	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	17	0	0	19	7	26.92	-	-	-	G	5021319	A	G	5021319	3	3	809	1	0	0	0	0	1	0	0	0	8055	217	8	5	777	5	KCNA1	12	5021319	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09		5021319	128830576	31	68417										
PRB2	0	genome.wustl.edu	37	chr12	11546260	11546260	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gtgggggaccttggggctggTtgcctccttgtgggggtggt	21	7	0	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	11546260	11546260	T	G	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	missense	c.752	p.N251T	0.001	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	110	0	0	65	31	31.63	-	-	-	G	11546260	T	G	11546260	3	3	809	1	0	0	0	0	1	0	0	0	12524	1725	60	5	502	5	PRB2	12	11546260	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09	6524941	11546260	122305635	32	68418										
DDX47	0	genome.wustl.edu	37	chr12	12974614	12974614	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	attgtaggtggaattgattcAatgtctcaatctttggccct	9	7	3	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	12974614	12974614	A	C	SNP	DDX47	ENST00000358007	human	ensembl	69_37n	1	known	silent	c.396	p.S132	0.106	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX47	HGNC	ENSG00000213782	64	0	0	44	23	34.33	-	-	-	C	12974614	A	C	12974614	2	2	809	1	0	0	0	0	0	0	0	1	4396	117	5	5		5	DDX47	12	12974614	Silent	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	1428354	12974614	120877281	33	68419										
EMP1	0	genome.wustl.edu	37	chr12	13366467	13366467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	taggtctttggaaaaactgtAccaacattagctgcagtgac	9	8	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	13366467	13366467	A	G	SNP	EMP1	ENST00000256951	human	ensembl	69_37n	1	known	missense	c.133	p.T45A	0.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22_EMP_MP20,prints_EMP_1	-	no_errors	EMP1	HGNC	ENSG00000134531	101	0	0	72	28	28	-	-	-	G	13366467	A	G	13366467	3	3	809	1	0	0	0	0	1	0	0	0	5138	391	14	5	139	5	EMP1	12	13366467	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	391853	13366467	120485428	34	68420										
OVCH1	0	genome.wustl.edu	37	chr12	29629199	29629199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	agcatcataaatacagtttgGactaaatttgacagcaaagt	7	6	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	29629199	29629199	G	A	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	missense	c.1411	p.P471S	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	39	0	0	31	30	49.18	-	-	-	A	29629199	G	A	29629199	3	1	809	1	0	0	0	0	1	0	0	0	11396	1174	41	2	2057	2	OVCH1	12	29629199	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	16262732	29629199	104222696	35	68421										
ACVR1B	0	genome.wustl.edu	37	chr12	52387771	52387771	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tcctgggtctctgcacaggcActgcgggtgatggggaagat	16	9	1	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	52387771	52387771	A	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	silent	c.1395	p.A465	0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	29	0	0	19	9	32.14	-	-	-	T	52387771	A	T	52387771	2	4	809	1	0	0	0	0	0	0	0	1	221	146	6	5		5	ACVR1B	12	52387771	Silent	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	22758572	52387771	81464124	36	68422										
CSAD	0	genome.wustl.edu	37	chr12	53565185	53565188	+	Frame_Shift_Del	DEL	GCGG	GCGG	-													0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	caatccgggtagcgctgataGcgggccagatttacagcata							TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	GCGG	GCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	53565185	53565188	GCGG	-	DEL	CSAD	ENST00000267085	human	ensembl	69_37n	-1	known	frame_shift_del	c.573_570	p.R191fs	0.999:1.000:1.000:1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	CSAD	HGNC	ENSG00000139631	20	0	0	16	5	23.81	-	-	-	-	53565188	GCGG	-	53565185	7	5	809	1	0	1	0	1	0	0	0	0	3955	958	34	0	1029	0	CSAD	12	53565185	Frame_Shift_Del	DEL	GCGG	TCGA-E2-A1L7-01A-11D-A142-09	1177414	53565185	80286710	37	68423										
ATF7	0	genome.wustl.edu	37	chr12	53946409	53946409	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	atgaactgccaggtggtcctCgtttgtaaatctctgaaacg	10	9	1	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	53946409	53946409	C	G	SNP	ATF7	ENST00000328463	human	ensembl	69_37n	-1	known	missense	c.61	p.E21Q	1.000	smart_Znf_C2H2-like,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2	pfam_bZIP_1,pfam_bZIP_2,smart_Znf_C2H2-like,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF7	HGNC	ENSG00000170653	61	0	0	13	25	65.79	-	-	-	G	53946409	C	G	53946409	3	3	809	1	0	0	0	0	1	0	0	0	1090	893	31	3	1463	3	ATF7	12	53946409	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	381224	53946409	79905486	38	68424										
HOXC10	0	genome.wustl.edu	37	chr12	54379358	54379358	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tgctcctacccacctagtgtCaaggaggagaatgtctgctg	11	11	2	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	54379358	54379358	C	G	SNP	HOXC10	ENST00000303460	human	ensembl	69_37n	1	known	silent	c.315	p.V105	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXC10	HGNC	ENSG00000180818	12	0	0	10	9	47.37	-	-	-	G	54379358	C	G	54379358	2	3	809	1	0	0	0	0	0	0	0	1	7360	813	29	2		2	HOXC10	12	54379358	Silent	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	432949	54379358	79472537	39	68425										
PTPRB	0	genome.wustl.edu	37	chr12	71002944	71002944	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cttgaaggttacatccgtatGtggtgttgtctatccgaaag	11	7	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	71002944	71002944	G	C	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.884	p.T295R	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	36	0	0	30	17	36.17	-	-	-	C	71002944	G	C	71002944	3	2	809	1	0	0	0	0	1	0	0	0	12879	1377	48	4	5887	4	PTPRB	12	71002944	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	16623586	71002944	62848951	40	68426										
GPC5	0	genome.wustl.edu	37	chr13	92346012	92346012	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	catgcatatatccggtcgttGgaagaactctcggatgcaat	10	9	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	13	92346012	92346012	G	C	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.897	p.L299F	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	21	0	0	14	9	39.13	-	-	-	C	92346012	G	C	92346012	3	2	809	1	0	0	0	0	1	0	0	0	6651	1339	47	4	907	4	GPC5	13	92346012	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09		92346012	22823866	41	68427										
C14orf102	0	genome.wustl.edu	37	chr14	90782992	90782992	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gtccttttcagaatcggtgtCtgtctcagacctgctgctac	9	12	3	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	14	90782992	90782992	C	T	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.337	p.D113N	0.016	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	77	0	0	97	15	13.39	-	-	-	T	90782992	C	T	90782992	3	4	809	1	0	0	0	0	1	0	0	0	1747	913	32	2	3205	2	C14orf102	14	90782992	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		90782992	16566548	42	68428										
WHAMM	0	genome.wustl.edu	37	chr15	83502073	83502073	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tgcgccctccccacgcctcaAtcaatgagcacattctggct	7	17	3	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	15	83502073	83502073	A	G	SNP	WHAMM	ENST00000286760	human	ensembl	69_37n	1	known	missense	c.2215	p.I739V	0.039	pfscan_WH2_dom	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232	34	0	0	17	20	54.05	-	-	-	G	83502073	A	G	83502073	3	3	809	1	0	0	0	0	1	0	0	0	17458	101	4	5	2253	5	WHAMM	15	83502073	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09		83502073	19029319	43	68429										
AKAP13	0	genome.wustl.edu	37	chr15	86284649	86284649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tgcgtgctgcccagaaacagCttgagagggaacaggagcag	15	9	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	15	86284649	86284649	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.7993	p.L2665F	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	13	0	0	13	5	27.78	-	-	-	T	86284649	C	T	86284649	3	4	809	1	0	0	0	0	1	0	0	0	449	797	28	4	8185	4	AKAP13	15	86284649	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	2782576	86284649	16246743	44	68430										
E4F1	0	genome.wustl.edu	37	chr16	2284337	2284337	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tggccaccggcgcgtccactCagacgagcggccctaccctt	11	18	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	2284337	2284337	C	T	SNP	E4F1	ENST00000301727	human	ensembl	69_37n	1	known	missense	c.1541	p.S514L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967	18	0	0	11	8	42.11	-	-	-	T	2284337	C	T	2284337	3	4	809	1	0	0	0	0	1	0	0	0	4909	838	29	2	1579	2	E4F1	16	2284337	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		2284337	88070416	45	68431										
RRN3	0	genome.wustl.edu	37	chr16	15165061	15165061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	atgatggcaggattacttggGtcctgcaattttttccagag	11	7	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	15165061	15165061	G	T	SNP	RRN3	ENST00000198767	human	ensembl	69_37n	-1	known	missense	c.1176	p.D392E	1.000	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	32	0	0	10	12	54.55	-	-	-	T	15165061	G	T	15165061	3	4	809	1	0	0	0	0	1	0	0	0	13770	1252	44	4	803	4	RRN3	16	15165061	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	12880724	15165061	75189692	46	68432										
MYH11	0	genome.wustl.edu	37	chr16	15878554	15878554	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	aaaacactctcagttactcaCgtaggcaaaagatgggcctt	8	10	2	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	15878554	15878554	C	T	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	splice_site	c.654+1	e5+1	1.000	-	-	-	no_errors	MYH11	HGNC	ENSG00000133392	61	0	0	12	19	61.29	-	-	-	T	15878554	C	T	15878554	5	4	809	1	0	0	0	0	0	0	1	0	10103	550	19	1	5467	1	MYH11	16	15878554	Splice_Site	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	713493	15878554	74476199	47	68433										
ABCC6	0	genome.wustl.edu	37	chr16	16284084	16284084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	aggaggccggaggtccgcaaGgcgcccagctcctggcctcg	16	15	0	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	16284084	16284084	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	silent	c.1572	p.A524	0.998	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	28	0	0	12	16	57.14	-	-	-	A	16284084	G	A	16284084	2	1	809	1	0	0	0	0	0	0	0	1	57	987	35	4		4	ABCC6	16	16284084	Silent	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	405530	16284084	74070669	48	68434										
HYDIN	0	genome.wustl.edu	37	chr16	70926361	70926361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tttctgttggggtcagtgaaCcctttttgggttggactgag	14	6	2	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	70926361	70926361	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.9317	p.G3106V	0.999	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	148	0	0	103	27	20.77	-	-	-	A	70926361	C	A	70926361	3	1	809	1	0	0	0	0	1	0	0	0	7521	507	18	4	6169	4	HYDIN	16	70926361	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	54642277	70926361	19428392	49	68435										
TP53	0	genome.wustl.edu	37	chr17	7577518	7577518	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cctggagtcttccagtgtgaTgatggtgaggatgggcctcc	15	9	1	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	7577518	7577518	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.763	p.I255F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	15	0	0	13	11	45.83	-	-	-	A	7577518	T	A	7577518	3	1	809	1	0	0	0	0	1	0	0	0	16477	1464	51	5	527	5	TP53	17	7577518	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09		7577518	73617692	50	68436										
SLC4A1	0	genome.wustl.edu	37	chr17	42335404	42335404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	acagtgcagcaaagtagatgAagatgacggcagccaggacc	13	9	0	4			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	42335404	42335404	A	G	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.1232	p.F411S	1.000	pfam_HCO3_transpt_C,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	33	0	0	7	17	70.83	-	-	-	G	42335404	A	G	42335404	3	3	809	1	0	0	0	0	1	0	0	0	14739	246	9	5	1543	5	SLC4A1	17	42335404	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	34757886	42335404	38859806	51	68437										
AKAP8	0	genome.wustl.edu	37	chr19	15469801	15469801	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gaggtatttttccagcatctTcactatatgtctgttgttca	7	8	4	0			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	15469801	15469801	T	G	SNP	AKAP8	ENST00000269701	human	ensembl	69_37n	-1	known	missense	c.1600	p.K534Q	1.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127	57	0	0	40	13	24.53	-	-	-	G	15469801	T	G	15469801	3	3	809	1	0	0	0	0	1	0	0	0	457	1792	62	5	486	5	AKAP8	19	15469801	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09		15469801	43659182	52	68438										
ZNF461	0	genome.wustl.edu	37	chr19	37129736	37129736	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ttgaatgatagctaaaggccTtcccacattccttacattca	5	11	1	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	37129736	37129736	T	G	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	missense	c.1511	p.K504T	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	53	0	0	27	22	44.9	-	-	-	G	37129736	T	G	37129736	3	3	809	1	0	0	0	0	1	0	0	0	18021	1609	56	5	184	5	ZNF461	19	37129736	Missense_Mutation	SNP	T	TCGA-E2-A1L7-01A-11D-A142-09	21659935	37129736	21999247	53	68439										
RYR1	0	genome.wustl.edu	37	chr19	38939431	38939431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tccagaccccaaggccctgcGgctcggcgtgctcaagaaga	12	15	1	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	38939431	38939431	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.1100	p.R367Q	1.000	pfam_MIR,superfamily_MIR	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	23	0	0	10	5	33.33	-	-	-	A	38939431	G	A	38939431	3	1	809	1	0	0	0	0	1	0	0	0	13854	1116	39	1	1142	1	RYR1	19	38939431	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09	1809695	38939431	20189552	54	68440										
CYP2B6	0	genome.wustl.edu	37	chr19	41515230	41515230	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cattggccacagtgtggagaAgcaccgtgaaaccctggacc	12	12	0	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	41515230	41515230	A	T	SNP	CYP2B6	ENST00000324071	human	ensembl	69_37n	1	known	missense	c.752	p.K251M	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408	28	0	0	26	5	16.13	-	-	-	T	41515230	A	T	41515230	3	4	809	1	0	0	0	0	1	0	0	0	4195	72	3	5	770	5	CYP2B6	19	41515230	Missense_Mutation	SNP	A	TCGA-E2-A1L7-01A-11D-A142-09	2575799	41515230	17613753	55	68441										
RPL13A	0	genome.wustl.edu	37	chr19	49993772	49993772	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cgcaagcggatgaacaccaaCccttcccgaggcccctacca	8	18	0	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	49993772	49993772	C	A	SNP	RPL13A	ENST00000391857	human	ensembl	69_37n	1	known	missense	c.195	p.N65K	1.000	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541	22	0	0	6	6	50	-	-	-	A	49993772	C	A	49993772	3	1	809	1	0	0	0	0	1	0	0	0	13646	506	18	4	209	4	RPL13A	19	49993772	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	8478542	49993772	9135211	56	68442										
ZNF671	0	genome.wustl.edu	37	chr19	58232994	58232994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ctctgccatgagagtcctgaCctctgacactcctgctacaa	7	15	2	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	58232994	58232994	C	T	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	missense	c.460	p.V154I	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	35	0	0	27	18	40	-	-	-	T	58232994	C	T	58232994	3	4	809	1	0	0	0	0	1	0	0	0	18174	507	18	4	1148	4	ZNF671	19	58232994	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	8239222	58232994	895989	57	68443										
DIDO1	0	genome.wustl.edu	37	chr20	61542888	61542888	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	tggtccttcgaaaaccccatGttttcctgaactctttgctg	7	12	1	1			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	20	61542888	61542888	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.77	p.T26I	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	29	0	0	22	14	38.89	-	-	-	A	61542888	G	A	61542888	3	1	809	1	0	0	0	0	1	0	0	0	4558	1377	48	4	6831	4	DIDO1	20	61542888	Missense_Mutation	SNP	G	TCGA-E2-A1L7-01A-11D-A142-09		61542888	1482632	58	68444										
TLR7	0	genome.wustl.edu	37	chrX	12903898	12903898	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	cctttcacagactggaccatCtggtagagatcgatttcaga	9	10	3	3			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	12903898	12903898	C	A	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	1	known	missense	c.271	p.L91M	0.690	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	37	0	0	22	22	50	-	-	-	A	12903898	C	A	12903898	3	1	809	1	0	0	0	0	1	0	0	0	16051	912	32	2	277	2	TLR7	23	12903898	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09		12903898	142366662	59	68445										
ZCCHC18	0	genome.wustl.edu	37	chrX	103360019	103360019	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ttctgagccacagtaaggatCtagtccagccctaaatgagt	9	10	2	2			TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	103360019	103360019	C	A	SNP	ZCCHC18	ENST00000422784	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZCCHC18	HGNC	ENSG00000166707	23	0	0	25	9	26.47	-	-	-	A	103360019	C	A	103360019	1	1	809	0	1	0	0	0	0	0	0	0	17682	928	32	2		2	ZCCHC18	23	103360019	RNA	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	90456121	103360019	51910541	60	68446										
TFDP3	0	genome.wustl.edu	37	chrX	132351078	132351078	+	Missense_Mutation	SNP	C	C	A													0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	ggcgagaggacgtcagtcatCctcgtcattctcactgaggt							TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	132351078	132351078	C	A	SNP	TFDP3	ENST00000310125	human	ensembl	69_37n	-1	known	missense	c.1210	p.D404Y	1.000	NULL	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP3	HGNC	ENSG00000183434	13	0	0	15	6	28.57	-	-	-	A	132351078	C	A	132351078	3	1	809	1	0	0	0	0	1	0	0	0	15894	855	30	2	11	2	TFDP3	23	132351078	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	28991059	132351078	22919482	61	68447	490	2								
TFDP3	0	genome.wustl.edu	37	chrX	132351079	132351079	+	Missense_Mutation	SNP	C	C	A													0.0819672131147541	5	0.583528219817121	1.42057142857143	2.36761904761905	0.887857142857143	1	1	0	gcgagaggacgtcagtcatcCtcgtcattctcactgaggtc							TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	132351079	132351079	C	A	SNP	TFDP3	ENST00000310125	human	ensembl	69_37n	-1	known	missense	c.1209	p.E403D	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP3	HGNC	ENSG00000183434	13	0	0	15	6	28.57	-	-	-	A	132351079	C	A	132351079	3	1	809	1	0	0	0	0	1	0	0	0	15894	680	24	4	12	4	TFDP3	23	132351079	Missense_Mutation	SNP	C	TCGA-E2-A1L7-01A-11D-A142-09	1	132351079	22919481	62	68448	490	2								
ARHGEF10L	0	genome.wustl.edu	37	chr1	17949512	17949512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	actaccgcaaccccctgatgGagatggagcccaaggcgctg	12	14	0	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	17949512	17949512	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	missense	c.1042	p.E348K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	18	0	0	14	6	30	-	-	-	A	17949512	G	A	17949512	3	1	810	1	0	0	0	0	1	0	0	0	897	1175	41	2	1084	2	ARHGEF10L	1	17949512	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09		17949512	231301109	1	68449										
NUP210L	0	genome.wustl.edu	37	chr1	153974380	153974380	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	tgaccagtgtagcccacccaTagactgaggtgtcagccaca	10	13	1	3			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	153974380	153974380	T	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.5012	p.Y1671C	0.993	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	69	0	0	30	49	62.03	-	-	-	C	153974380	T	C	153974380	3	2	810	1	0	0	0	0	1	0	0	0	10834	1406	49	5	674	5	NUP210L	1	153974380	Missense_Mutation	SNP	T	TCGA-E2-A1L8-01A-11D-A13L-09	136024868	153974380	95276241	2	68450										
LMNA	0	genome.wustl.edu	37	chr1	156104249	156104249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	tcaggatgagatgctgcggcGggtggatgctgagaacaggc	18	7	1	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	156104249	156104249	G	A	SNP	LMNA	ENST00000368300	human	ensembl	69_37n	1	known	missense	c.569	p.R190Q	1.000	pfam_F	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	60	0	0	65	16	19.51	-	-	-	A	156104249	G	A	156104249	3	1	810	1	0	0	0	0	1	0	0	0	8904	1116	39	1	579	1	LMNA	1	156104249	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09	2129869	156104249	93146372	3	68451										
LAMC1	0	genome.wustl.edu	37	chr1	183093773	183093773	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gtctcatccccaggtaagagAtgtgagctctgtgatgatgg	13	8	2	4			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	183093773	183093773	A	C	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	missense	c.2409	p.R803S	0.823	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	81	0	0	89	16	15.24	-	-	-	C	183093773	A	C	183093773	3	2	810	1	0	0	0	0	1	0	0	0	8668	330	12	5	2463	5	LAMC1	1	183093773	Missense_Mutation	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09	26989524	183093773	66156848	4	68452										
LAMB3	0	genome.wustl.edu	37	chr1	209803184	209803184	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	ggtgtggtcccggcaattgtCacacacacctccatatgccc	9	15	1	0			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	209803184	209803184	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344N	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	52	0	0	62	21	25.3	-	-	-	T	209803184	C	T	209803184	3	4	810	1	0	0	0	0	1	0	0	0	8666	826	29	2	2544	2	LAMB3	1	209803184	Missense_Mutation	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09	26709411	209803184	39447437	5	68453										
GCC2	0	genome.wustl.edu	37	chr2	109092242	109092242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	ggaagaacttgaatctcttcGatcagaaaaggaccagttat	9	7	2	3			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	109092242	109092242	G	T	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	1	known	missense	c.2996	p.R999L	0.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	20	0	0	10	8	44.44	-	-	-	T	109092242	G	T	109092242	3	4	810	1	0	0	0	0	1	0	0	0	6336	1058	37	3	3030	3	GCC2	2	109092242	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09		109092242	134107131	6	68454										
ADAM23	0	genome.wustl.edu	37	chr2	207406802	207406802	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gagcactgttactaccatggAagcatcagaggcgtcaaaga	11	9	2	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	207406802	207406802	A	G	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	silent	c.600	p.G200	0.683	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	53	0	0	37	11	22.92	-	-	-	G	207406802	A	G	207406802	2	3	810	1	0	0	0	0	0	0	0	1	245	233	9	5		5	ADAM23	2	207406802	Silent	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09	98314560	207406802	35792571	7	68455										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	54	0	0	13	31	70.45	-	-	-	G	178952085	A	G	178952085	3	3	810	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		178952085	19070345	8	68456										
C5orf42	0	genome.wustl.edu	37	chr5	37169187	37169187	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	tattgatccaagttcacatgAttaggaatttctgtaattac	6	6	2	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	5	37169187	37169187	A	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.6939	p.N2313K	0.350	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	159	0	0	79	59	42.45	-	-	-	T	37169187	A	T	37169187	3	4	810	1	0	0	0	0	1	0	0	0	2322	330	12	5	2730	5	C5orf42	5	37169187	Missense_Mutation	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		37169187	143746073	9	68457										
GRIK2	0	genome.wustl.edu	37	chr6	102376327	102376327	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	aaagcactgtccaccaggatAgtgggaggcatttggtggtt	14	7	0	0			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	6	102376327	102376327	A	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	silent	c.1905	p.I635	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	139	0	0	74	26	26	-	-	-	C	102376327	A	C	102376327	2	2	810	1	0	0	0	0	0	0	0	1	6825	410	15	5		5	GRIK2	6	102376327	Silent	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		102376327	68738740	10	68458										
EIF4H	0	genome.wustl.edu	37	chr7	73609623	73609623	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	cctagagaggaagtcgttcaAaaggagcaagaatgagcctg	13	7	1	3			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	73609623	73609623	A	G	SNP	EIF4H	ENST00000265753	human	ensembl	69_37n	1	known	silent	c.732	p.Q244	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682	41	0	0	21	17	44.74	-	-	-	G	73609623	A	G	73609623	2	3	810	1	0	0	0	0	0	0	0	1	5076	11	1	5		5	EIF4H	7	73609623	Silent	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		73609623	85529040	11	68459										
DTX2	0	genome.wustl.edu	37	chr7	76111950	76111950	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	aagccagcgtctgtgactatCtggagcagcaggtggccagg	15	10	2	1			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	76111950	76111950	C	G	SNP	DTX2	ENST00000324432	human	ensembl	69_37n	1	known	missense	c.394	p.L132V	0.998	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	Clone_based_vega_gene	ENSG00000091073	30	0	0	8	11	57.89	-	-	-	G	76111950	C	G	76111950	3	3	810	1	0	0	0	0	1	0	0	0	4829	912	32	2	400	2	DTX2	7	76111950	Missense_Mutation	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09	2502327	76111950	83026713	12	68460										
SMARCA2	0	genome.wustl.edu	37	chr9	2054717	2054717	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	cttcggttactcaatttccaGcgtcaggtaatacattttcc	6	11	2	0			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	2054717	2054717	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	missense	c.1167	p.Q389H	0.888	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	80	0	0	41	35	46.05	-	-	-	T	2054717	G	T	2054717	3	4	810	1	0	0	0	0	1	0	0	0	14858	962	34	4	1185	4	SMARCA2	9	2054717	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09		2054717	139158714	13	68461										
C9orf89	0	genome.wustl.edu	37	chr9	95869982	95869982	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	cctattgtgaccgcctggtgCaggacacgcctttcctgaca	10	14	0	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	95869982	95869982	C	G	SNP	C9orf89	ENST00000466409	human	ensembl	69_37n	1	known	missense	c.34	p.Q12E	0.996	NULL	superfamily_DEATH-like	-	no_errors	C9orf89	HGNC	ENSG00000165233	28	0	0	23	9	28.12	-	-	-	G	95869982	C	G	95869982	3	3	810	1	0	0	0	0	1	0	0	0	2528	711	25	4	40	4	C9orf89	9	95869982	Missense_Mutation	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09	93815265	95869982	45343449	14	68462										
PTPDC1	0	genome.wustl.edu	37	chr9	96847676	96847676	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	cccgctggagtgagcaggagCaagccattaagggggtttac	15	9	0	1			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	96847676	96847676	C	A	SNP	PTPDC1	ENST00000375360	human	ensembl	69_37n	1	known	missense	c.226	p.Q76K	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	36	0	0	20	11	35.48	-	-	-	A	96847676	C	A	96847676	3	1	810	1	0	0	0	0	1	0	0	0	12854	711	25	4	474	4	PTPDC1	9	96847676	Missense_Mutation	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09	977694	96847676	44365755	15	68463										
OR1B1	0	genome.wustl.edu	37	chr9	125391118	125391118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	accagcagctgaaggcaaacGtagaatagcggccccaattc	10	12	0	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	125391118	125391118	G	A	SNP	OR1B1	ENST00000304833	human	ensembl	69_37n	-1	novel	missense	c.697	p.R233C	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1B1	HGNC	ENSG00000171484	36	0	0	18	5	21.74	-	-	-	A	125391118	G	A	125391118	3	1	810	1	0	0	0	0	1	0	0	0	11024	1145	40	1	262	1	OR1B1	9	125391118	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09	28543442	125391118	15822313	16	68464										
FLI1	0	genome.wustl.edu	37	chr11	128642719	128642719	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gcatgtgaggcaatggctggAgtgggccataaaggagtaca	16	6	0	1			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	11	128642719	128642719	A	G	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	missense	c.428	p.E143G	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	53	0	0	25	6	19.35	-	-	-	G	128642719	A	G	128642719	3	3	810	1	0	0	0	0	1	0	0	0	5970	304	11	5	442	5	FLI1	11	128642719	Missense_Mutation	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		128642719	6363797	17	68465										
CLEC12A	0	genome.wustl.edu	37	chr12	10134707	10134707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	tcgtggtatgagagtggataAtataatcaactcctctgcct	9	8	2	1			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	10134707	10134707	A	C	SNP	CLEC12A	ENST00000355690	human	ensembl	69_37n	1	known	missense	c.650	p.N217T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322	85	0	0	42	12	22.22	-	-	-	C	10134707	A	C	10134707	3	2	810	1	0	0	0	0	1	0	0	0	3527	101	4	5	638	5	CLEC12A	12	10134707	Missense_Mutation	SNP	A	TCGA-E2-A1L8-01A-11D-A13L-09		10134707	123717188	18	68466										
GNS	0	genome.wustl.edu	37	chr12	65133264	65133264	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	tccacaaggtcatcaactgaGaggagagtttgccacctgga	11	10	2	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	65133264	65133264	G	A	SNP	GNS	ENST00000540196	human	ensembl	69_37n	-1	novel	missense	c.349	p.L117F	0.998	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNS	HGNC	ENSG00000135677	85	0	0	68	41	37.61	-	-	-	A	65133264	G	A	65133264	3	1	810	1	0	0	0	0	1	0	0	0	6602	929	33	2	795	2	GNS	12	65133264	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09	54998557	65133264	68718631	19	68467										
ZIC2	0	genome.wustl.edu	37	chr13	100635003	100635006	+	Frame_Shift_Del	DEL	GCGG	GCGG	-													0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gtatgaacatggcagcagccGcggcccaccaccaccaccac							TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	GCGG	GCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	13	100635003	100635006	GCGG	-	DEL	ZIC2	ENST00000376335	human	ensembl	69_37n	1	known	frame_shift_del	c.685_688	p.A229fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355	16	0	0	4	2	33.33	-	-	-	-	100635006	GCGG	-	100635003	7	5	810	1	0	1	0	1	0	0	0	0	17775	1087	38	0	687	0	ZIC2	13	100635003	Frame_Shift_Del	DEL	GCGG	TCGA-E2-A1L8-01A-11D-A13L-09		100635003	14534875	20	68468										
CDH1	0	genome.wustl.edu	37	chr16	68844245	68844245	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	catggaaggtgctcttccagGtatatccactaatgagaatc	9	9	1	1			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	16	68844245	68844245	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.832+1	e6+1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0	11	13	54.17	-	-	-	A	68844245	G	A	68844245	5	1	810	1	0	0	0	0	0	0	1	0	3124	1275	44	4	855	4	CDH1	16	68844245	Splice_Site	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09		68844245	21510508	21	68469										
DNAH9	0	genome.wustl.edu	37	chr17	11650986	11650986	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	cacaagacctatcagatcatGaaacggcgccccgtctggac	9	14	3	3			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	11650986	11650986	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.6513	p.M2171I	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	62	0	0	25	10	28.57	-	-	-	A	11650986	G	A	11650986	3	1	810	1	0	0	0	0	1	0	0	0	4643	1290	45	2	6639	2	DNAH9	17	11650986	Missense_Mutation	SNP	G	TCGA-E2-A1L8-01A-11D-A13L-09		11650986	69544224	22	68470										
ATAD5	0	genome.wustl.edu	37	chr17	29214375	29214375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gtggagttttagaagaacgaCcattaaccctttatcgtaag	9	7	0	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	29214375	29214375	C	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.4243	p.P1415A	0.982	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	66	0	0	31	24	43.64	-	-	-	G	29214375	C	G	29214375	3	3	810	1	0	0	0	0	1	0	0	0	1080	507	18	4	4317	4	ATAD5	17	29214375	Missense_Mutation	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09	17563389	29214375	51980835	23	68471										
RBL1	0	genome.wustl.edu	37	chr20	35661256	35661256	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	ggaaagaggtatcagtgtgaTctctccagcatcatttgcga	11	8	3	2			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	20	35661256	35661256	T	G	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.2194	p.I732L	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	48	0	0	41	7	14.58	-	-	-	G	35661256	T	G	35661256	3	3	810	1	0	0	0	0	1	0	0	0	13192	1435	50	5	1049	5	RBL1	20	35661256	Missense_Mutation	SNP	T	TCGA-E2-A1L8-01A-11D-A13L-09		35661256	27364264	24	68472										
AKAP4	0	genome.wustl.edu	37	chrX	49958245	49958245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	4	0.221690648608481	2.49494949494949	2.28703703703704	2.57291666666667	0.485714285714286	1	0	gacacaatctccttggtgtgCcttagcaacaccctcttcag	7	14	3	0			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	X	49958245	49958245	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.1119	p.R373	0.674	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	44	0	0	45	9	16.67	-	-	-	T	49958245	C	T	49958245	2	4	810	1	0	0	0	0	0	0	0	1	453	738	26	4		4	AKAP4	23	49958245	Silent	SNP	C	TCGA-E2-A1L8-01A-11D-A13L-09		49958245	105312315	25	68473										
CD1C	0	genome.wustl.edu	37	chr1	158261046	158261046	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	ctcatggctgggacagtgaaTcaggcacaataattttcctg	10	9	2	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	1	158261046	158261046	T	C	SNP	CD1C	ENST00000368170	human	ensembl	69_37n	1	known	missense	c.184	p.S62P	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1C	HGNC	ENSG00000158481	79	0	0	84	26	23.42	-	-	-	C	158261046	T	C	158261046	3	2	811	1	0	0	0	0	1	0	0	0	3005	1435	50	5	190	5	CD1C	1	158261046	Missense_Mutation	SNP	T	TCGA-E2-A1L9-01A-11D-A13L-09		158261046	90989575	1	68474										
ASXL2	0	genome.wustl.edu	37	chr2	25982469	25982469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tattaaccagaatggagtccGgtgtctcaacgtcaatgtca	9	9	3	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	2	25982469	25982469	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.821	p.P274L	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	151	0	0	137	23	14.37	-	-	-	A	25982469	G	A	25982469	3	1	811	1	0	0	0	0	1	0	0	0	1071	1116	39	1	3506	1	ASXL2	2	25982469	Missense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09		25982469	217216904	2	68475										
SLC40A1	0	genome.wustl.edu	37	chr2	190428522	190428522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	gagaaacggacaagtccaggGggcttccaggcatgaataca	13	9	0	2			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	2	190428522	190428522	G	T	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.1190	p.P397H	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	58	0	0	48	18	27.27	-	-	-	T	190428522	G	T	190428522	3	4	811	1	0	0	0	0	1	0	0	0	14717	1232	43	4	533	4	SLC40A1	2	190428522	Missense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09	164446053	190428522	52770851	3	68476										
SEMA3G	0	genome.wustl.edu	37	chr3	52469820	52469820	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tccacccggggcaggttggcGaagccaatgagctgcaggat	15	11	0	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	3	52469820	52469820	G	A	SNP	SEMA3G	ENST00000231721	human	ensembl	69_37n	-1	known	silent	c.2148	p.F716	0.001	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3G	HGNC	ENSG00000010319	72	0	0	33	13	28.26	-	-	-	A	52469820	G	A	52469820	2	1	811	1	0	0	0	0	0	0	0	1	14118	1049	37	1		1	SEMA3G	3	52469820	Silent	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09		52469820	145552610	4	68477										
DSPP	0	genome.wustl.edu	37	chr4	88534248	88534248	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	aaaattcagatagtaaagaaTattatgaccctgaaggcaaa	7	5	1	4			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	4	88534248	88534248	T	A	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	missense	c.910	p.Y304N	0.769	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	61	0	0	33	12	26.67	-	-	-	A	88534248	T	A	88534248	3	1	811	1	0	0	0	0	1	0	0	0	4817	1406	49	5	920	5	DSPP	4	88534248	Missense_Mutation	SNP	T	TCGA-E2-A1L9-01A-11D-A13L-09		88534248	102620028	5	68478										
SYNCRIP	0	genome.wustl.edu	37	chr6	86332254	86332254	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	ggatcagcccattcaacagtTccaacattcccccagacctt	5	16	2	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	6	86332254	86332254	T	C	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	silent	c.954	p.G318	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	220	1	0.45	145	52	26.4	-	-	-	C	86332254	T	C	86332254	2	2	811	1	0	0	0	0	0	0	0	1	15536	1770	62	5		5	SYNCRIP	6	86332254	Silent	SNP	T	TCGA-E2-A1L9-01A-11D-A13L-09		86332254	84782813	6	68479										
SLC25A13	0	genome.wustl.edu	37	chr7	95761189	95761189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	cccgcagaaagcatgctttgGcaccctgcacatttgcaaag	9	13	0	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	95761189	95761189	G	A	SNP	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	missense	c.1460	p.A487V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	49	0	0	30	7	18.92	-	-	-	A	95761189	G	A	95761189	3	1	811	1	0	0	0	0	1	0	0	0	14564	1203	42	4	586	4	SLC25A13	7	95761189	Missense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09		95761189	63377474	7	68480										
GRM8	0	genome.wustl.edu	37	chr7	126173165	126173165	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	gtacaagtgaccatcaagagGatactgtatccaagtgaaca	9	8	1	3			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	126173165	126173165	G	T	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	silent	c.2271	p.I757	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	124	0	0	93	47	33.57	-	-	-	T	126173165	G	T	126173165	2	4	811	1	0	0	0	0	0	0	0	1	6854	1164	41	2		2	GRM8	7	126173165	Silent	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09	30411976	126173165	32965498	8	68481										
MLL3	0	genome.wustl.edu	37	chr7	151932951	151932952	+	Frame_Shift_Ins	INS	-	-	GG													0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tttcagctttgacctgcctcINSggccacctcgccccgacagt							TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	151932951	151932952	-	GG	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2720_2719	p.R907fs	1.000:0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	78	0	0	82	17	17.17	-	-	-	GG	151932952	-	GG	151932951	7	5	811	1	0	1	1	0	0	0	0	0	9693	884	31	0	12191	0	MLL3	7	151932951	Frame_Shift_Ins	INS	-	TCGA-E2-A1L9-01A-11D-A13L-09	25759786	151932951	7205712	9	68482										
MLL3	0	genome.wustl.edu	37	chr7	152012230	152012230	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	cgaaactgcttactttctctGtcctctttgttttcgtggtg	8	10	2	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	152012230	152012230	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.583	p.Q195*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	186	0	0	134	26	16.25	-	-	-	A	152012230	G	A	152012230	4	1	811	1	0	0	0	0	0	1	0	0	9693	1386	48	4	14376	4	MLL3	7	152012230	Nonsense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09	79279	152012230	7126433	10	68483										
IFNA21	0	genome.wustl.edu	37	chr9	21166507	21166507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	gccaggagtatcaaggccctCctattacccaggctgtgggt	12	12	1	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	9	21166507	21166507	C	A	SNP	IFNA21	ENST00000380225	human	ensembl	69_37n	-1	known	missense	c.105	p.R35S	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA21	HGNC	ENSG00000137080	134	0	0	108	20	15.62	-	-	-	A	21166507	C	A	21166507	3	1	811	1	0	0	0	0	1	0	0	0	7592	854	30	2	468	2	IFNA21	9	21166507	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		21166507	120046924	11	68484										
GATA3	0	genome.wustl.edu	37	chr10	8115705	8115706	+	Frame_Shift_Del	DEL	AA	AA	-													0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	aattgatctttgtttagattAacagacccctgactatgaag							TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	10	8115705	8115706	AA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1054_1055	p.N352fs	1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	39	0	0	28	9	24.32	-	-	-	-	8115706	AA	-	8115705	7	5	811	1	0	1	0	1	0	0	0	0	6305	362	13	0	1072	0	GATA3	10	8115705	Frame_Shift_Del	DEL	AA	TCGA-E2-A1L9-01A-11D-A13L-09		8115705	127419042	12	68485										
SYT9	0	genome.wustl.edu	37	chr11	7439351	7439351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	ttgtccatagcagtcatggaCtatgaccggtgagatacctg	11	9	1	2			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	11	7439351	7439351	C	A	SNP	SYT9	ENST00000318881	human	ensembl	69_37n	1	known	missense	c.1329	p.D443E	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743	77	0	0	66	26	28.26	-	-	-	A	7439351	C	A	7439351	3	1	811	1	0	0	0	0	1	0	0	0	15573	564	20	4	1347	4	SYT9	11	7439351	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		7439351	127567165	13	68486										
E2F7	0	genome.wustl.edu	37	chr12	77439990	77439990	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	cctagtctctggaggttcctCagggtttttggcaggctgtg	14	9	2	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	12	77439990	77439990	C	T	SNP	E2F7	ENST00000322886	human	ensembl	69_37n	-1	known	silent	c.657	p.L219	0.120	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	131	0	0	63	51	44.74	-	-	-	T	77439990	C	T	77439990	2	4	811	1	0	0	0	0	0	0	0	1	4907	813	29	2		2	E2F7	12	77439990	Silent	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		77439990	56411905	14	68487										
ABHD13	0	genome.wustl.edu	37	chr13	108882272	108882272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tattttcattctttccgatgCgttaccttcctttatggtgc	6	10	2	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	13	108882272	108882272	C	T	SNP	ABHD13	ENST00000375898	human	ensembl	69_37n	1	known	missense	c.706	p.R236C	1.000	NULL	pfam_AB_hydrolase_1,pfam_AXE1	-	no_errors	ABHD13	HGNC	ENSG00000139826	94	0	0	76	22	22.45	-	-	-	T	108882272	C	T	108882272	3	4	811	1	0	0	0	0	1	0	0	0	78	768	27	1	708	1	ABHD13	13	108882272	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		108882272	6287606	15	68488										
CBFB	0	genome.wustl.edu	37	chr16	67070543	67070543	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	gtattgatttttctaaaaggCttttgtggccacaggaacca	9	7	1	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	16	67070543	67070543	C	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.167	p.A56G	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	98	0	0	42	70	61.4	-	-	-	G	67070543	C	G	67070543	3	3	811	1	0	0	0	0	1	0	0	0	2724	811	28	4	177	4	CBFB	16	67070543	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		67070543	23284210	16	68489										
BRCA1	0	genome.wustl.edu	37	chr17	41244468	41244468	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tttctctaatgttattacggCtaattgtgctcactgtactt	6	8	2	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	17	41244468	41244468	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.3080	p.S1027I	0.912	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	121	0	0	70	19	21.35	-	-	-	A	41244468	C	A	41244468	3	1	811	1	0	0	0	0	1	0	0	0	1506	797	28	4	2637	4	BRCA1	17	41244468	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		41244468	39950742	17	68490										
CBX2	0	genome.wustl.edu	37	chr17	77755934	77755934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	gggacggaaaggaacaggaaGcatgcgtacagtaggtgctc	16	7	0	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	17	77755934	77755934	G	A	SNP	CBX2	ENST00000269399	human	ensembl	69_37n	1	known	missense	c.622	p.A208T	0.001	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX2	HGNC	ENSG00000173894	18	0	0	10	5	33.33	-	-	-	A	77755934	G	A	77755934	3	1	811	1	0	0	0	0	1	0	0	0	2743	971	34	4	636	4	CBX2	17	77755934	Missense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09	36511466	77755934	3439276	18	68491										
XAB2	0	genome.wustl.edu	37	chr19	7691056	7691056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	tgccggccttagacacgaaaCgctcgtcgttcaccacggtg	11	14	1	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	19	7691056	7691056	C	T	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	missense	c.623	p.R208H	0.999	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	43	0	0	33	9	21.43	-	-	-	T	7691056	C	T	7691056	3	4	811	1	0	0	0	0	1	0	0	0	17515	536	19	1	2004	1	XAB2	19	7691056	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		7691056	51437927	19	68492										
SLC1A6	0	genome.wustl.edu	37	chr19	15079170	15079170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	ggtctcgatccggccctcccGgtgcagcccctccttggagc	12	18	1	0			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	19	15079170	15079170	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	0.761	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	65	0	0	59	23	28.05	-	-	-	A	15079170	G	A	15079170	3	1	811	1	0	0	0	0	1	0	0	0	14525	1115	39	1	1229	1	SLC1A6	19	15079170	Missense_Mutation	SNP	G	TCGA-E2-A1L9-01A-11D-A13L-09	7388114	15079170	44049813	20	68493										
CXorf36	0	genome.wustl.edu	37	chrX	45011033	45011033	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0476190476190476	1	0.957008104689917	0.844155844155844	0	0.928571428571429	1	1	0	ctgggcggatgctgtccccaCactgaacaaggatggagtct	13	11	1	1			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	X	45011033	45011033	C	T	SNP	CXorf36	ENST00000398000	human	ensembl	69_37n	-1	known	missense	c.1166	p.C389Y	0.966	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	102	0	0	42	23	35.38	-	-	-	T	45011033	C	T	45011033	3	4	811	1	0	0	0	0	1	0	0	0	4137	478	17	4	139	4	CXorf36	23	45011033	Missense_Mutation	SNP	C	TCGA-E2-A1L9-01A-11D-A13L-09		45011033	110259527	21	68494										
ATAD3B	0	genome.wustl.edu	37	chr1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgtcttgtggtggcggtcggCcgttctgccccccagggcac	15	14	2	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	1	1431165	1431165	C	T	SNP	ATAD3B	ENST00000308647	human	ensembl	69_37n	1	known	missense	c.1915	p.P639S	0.003	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	18	0	0	13	15	53.57	-	-	-	T	1431165	C	T	1431165	3	4	812	1	0	0	0	0	1	0	0	0	1078	739	26	4	1977	4	ATAD3B	1	1431165	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		1431165	247819456	1	68495										
ARID1A	0	genome.wustl.edu	37	chr1	27087442	27087442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	atttccagcagccaaggagaGcagagtaatccagctcagtc	10	11	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	1	27087442	27087442	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	silent	c.2016	p.E672	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	44	0	0	42	19	31.15	-	-	-	A	27087442	G	A	27087442	2	1	812	1	0	0	0	0	0	0	0	1	915	962	34	4		4	ARID1A	1	27087442	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	25656277	27087442	222163179	2	68496										
ZCCHC11	0	genome.wustl.edu	37	chr1	52901105	52901105	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agctgaaccagccacctgttGagcatttacaaggttgcgga	11	10	0	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	1	52901105	52901105	G	C	SNP	ZCCHC11	ENST00000474453	human	ensembl	69_37n	-1	novel	nonsense	c.728	p.S243*	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC11	HGNC	ENSG00000134744	38	0	0	49	18	26.87	-	-	-	C	52901105	G	C	52901105	4	2	812	1	0	0	0	0	0	1	0	0	17676	1299	45	2	758	2	ZCCHC11	1	52901105	Nonsense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	25813663	52901105	196349516	3	68497										
OR10K1	0	genome.wustl.edu	37	chr1	158435767	158435767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ctcagtgctcatgggacatgGggtgtgtatgggactaatgg	16	6	2	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	1	158435767	158435767	G	T	SNP	OR10K1	ENST00000289451	human	ensembl	69_37n	1	known	missense	c.416	p.G139V	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285	99	0	0	160	48	23.08	-	-	-	T	158435767	G	T	158435767	3	4	812	1	0	0	0	0	1	0	0	0	10986	1232	43	4	418	4	OR10K1	1	158435767	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	105534662	158435767	90814854	4	68498										
VASH2	0	genome.wustl.edu	37	chr1	213139626	213139626	+	Frame_Shift_Del	DEL	G	G	-													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cctacaggttaatggaaacaGcaaaagaaatgacccgagag							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	1	213139626	213139626	G	-	DEL	VASH2	ENST00000517399	human	ensembl	69_37n	1	known	frame_shift_del	c.436	p.A146fs	1.000	NULL	NULL	-	no_errors	VASH2	HGNC	ENSG00000143494	58	0	0	132	31	18.9	-	-	-	-	213139626	G	-	213139626	7	5	812	1	0	1	0	1	0	0	0	0	17223	971	34	0	450	0	VASH2	1	213139626	Frame_Shift_Del	DEL	G	TCGA-E2-A1LA-01A-11D-A142-09	54703859	213139626	36110995	5	68499										
HAAO	0	genome.wustl.edu	37	chr2	42994764	42994764	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gctagcaccaggaggctgtcAtcaggggccaggctcaggcg	16	12	3	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	2	42994764	42994764	A	C	SNP	HAAO	ENST00000294973	human	ensembl	69_37n	-1	known	missense	c.753	p.D251E	0.863	superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882	11	0	0	23	6	20.69	-	-	-	C	42994764	A	C	42994764	3	2	812	1	0	0	0	0	1	0	0	0	6988	214	8	5	115	5	HAAO	2	42994764	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09		42994764	200204609	6	68500										
HAAO	0	genome.wustl.edu	37	chr2	43010980	43010980	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ttgctccaggactcggagaaCcatgtctccctccagctggt	10	14	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	2	43010980	43010980	C	G	SNP	HAAO	ENST00000294973	human	ensembl	69_37n	-1	known	missense	c.187	p.V63L	0.998	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882	25	0	0	51	22	30.14	-	-	-	G	43010980	C	G	43010980	3	3	812	1	0	0	0	0	1	0	0	0	6988	507	18	4	705	4	HAAO	2	43010980	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	16216	43010980	200188393	7	68501										
IL1RL1	0	genome.wustl.edu	37	chr2	102964405	102964405	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tttttctttcttttgaatagTtgatcatcatagcatctact	4	7	5	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	2	102964405	102964405	T	A	SNP	IL1RL1	ENST00000233954	human	ensembl	69_37n	1	known	missense	c.971	p.I324N	0.803	NULL	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RL1	HGNC	ENSG00000115602	60	0	0	47	25	34.72	-	-	-	A	102964405	T	A	102964405	3	1	812	1	0	0	0	0	1	0	0	0	7717	1739	60	5	1018	5	IL1RL1	2	102964405	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	59953425	102964405	140234968	8	68502										
TTN	0	genome.wustl.edu	37	chr2	179604705	179604705	+	Frame_Shift_Del	DEL	G	G	-													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	caccttttcaatatttcttaGccactcagagaaaagacctg							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	2	179604705	179604705	G	-	DEL	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	frame_shift_del	c.12742	p.L4248fs	1.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	34	0	0	30	8	21.05	-	-	-	-	179604705	G	-	179604705	7	5	812	1	0	1	0	1	0	0	0	0	16832	962	34	0	91534	0	TTN	2	179604705	Frame_Shift_Del	DEL	G	TCGA-E2-A1LA-01A-11D-A142-09	76640300	179604705	63594668	9	68503										
PRSS42	0	genome.wustl.edu	37	chr3	46875230	46875230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	caggagttgactcccccgggCgccccgacgacagccaagaa	12	16	0	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	46875230	46875230	C	T	SNP	PRSS42	ENST00000447340	human	ensembl	69_37n	-1	putative	silent	c.30	p.A10	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS42	HGNC	ENSG00000178055	10	0	0	12	4	25	-	-	-	T	46875230	C	T	46875230	2	4	812	1	0	0	0	0	0	0	0	1	12708	783	27	1		1	PRSS42	3	46875230	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		46875230	151147200	10	68504										
NBEAL2	0	genome.wustl.edu	37	chr3	47037780	47037780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gcctttctcctcctgctgtaTcggctccgctggataccgca	9	16	1	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	47037780	47037780	T	C	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	missense	c.2171	p.I724T	1.000	superfamily_ConA-like_lec_gl	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	31	0	0	19	14	42.42	-	-	-	C	47037780	T	C	47037780	3	2	812	1	0	0	0	0	1	0	0	0	10261	1435	50	5	2233	5	NBEAL2	3	47037780	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	162550	47037780	150984650	11	68505										
USP19	0	genome.wustl.edu	37	chr3	49152539	49152539	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gtgaactggctggccttactCgccacaatggcctggataca	11	12	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	49152539	49152539	C	T	SNP	USP19	ENST00000398888	human	ensembl	69_37n	-1	known	silent	c.1725	p.A575	0.447	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_DUF1872,pfam_Peptidase_C19,pfam_Znf_MYND,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Znf_MYND,pfscan_Peptidase_C19	-	no_errors	USP19	HGNC	ENSG00000172046	33	0	0	50	17	25.37	-	-	-	T	49152539	C	T	49152539	2	4	812	1	0	0	0	0	0	0	0	1	17147	871	31	1		1	USP19	3	49152539	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	2114759	49152539	148869891	12	68506										
DNAH1	0	genome.wustl.edu	37	chr3	52423503	52423503	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	taccgcacggtgctctacgaCagctgggtcaagcagctcag	12	13	3	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	52423503	52423503	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	silent	c.9522	p.D3174	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	13	0	0	29	11	27.5	-	-	-	T	52423503	C	T	52423503	2	4	812	1	0	0	0	0	0	0	0	1	4633	477	17	4		4	DNAH1	3	52423503	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	3270964	52423503	145598927	13	68507										
CADPS	0	genome.wustl.edu	37	chr3	62503858	62503858	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ctgattttctagcagaactcGgagcctctctttgatttctt	7	10	3	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	62503858	62503858	G	A	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	nonsense	c.2359	p.R787*	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	44	0	0	44	22	33.33	-	-	-	A	62503858	G	A	62503858	4	1	812	1	0	0	0	0	0	1	0	0	2595	1124	39	1	1843	1	CADPS	3	62503858	Nonsense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	10080355	62503858	135518572	14	68508										
IFT57	0	genome.wustl.edu	37	chr3	107925495	107925495	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	caagtgatatgtctgggcctTtaaaacgttgagatcaataa	9	6	2	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	107925495	107925495	T	C	SNP	IFT57	ENST00000264538	human	ensembl	69_37n	-1	known	missense	c.634	p.K212E	1.000	pfam_Intra-flagellar_transport_57	pfam_Intra-flagellar_transport_57,superfamily_t-SNARE	-	no_errors	IFT57	HGNC	ENSG00000114446	40	0	0	54	8	12.9	-	-	-	C	107925495	T	C	107925495	3	2	812	1	0	0	0	0	1	0	0	0	7616	1850	64	5	683	5	IFT57	3	107925495	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	45421637	107925495	90096935	15	68509										
ZBED2	0	genome.wustl.edu	37	chr3	111312772	111312772	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ccacagtgcagtggtgcccaCgttgaccccagggccacggc	13	16	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	111312772	111312772	C	A	SNP	ZBED2	ENST00000317012	human	ensembl	69_37n	-1	known	missense	c.277	p.V93L	0.368	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED2	HGNC	ENSG00000177494	42	0	0	34	19	35.85	-	-	-	A	111312772	C	A	111312772	3	1	812	1	0	0	0	0	1	0	0	0	17615	536	19	3	383	3	ZBED2	3	111312772	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	3387277	111312772	86709658	16	68510										
COL6A5	0	genome.wustl.edu	37	chr3	130110116	130110116	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gatcacatgattaacctaacTatccatttggtgaagaaagc	7	8	1	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	3	130110116	130110116	T	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.2511	p.T837	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	41	0	0	37	13	26	-	-	-	G	130110116	T	G	130110116	2	3	812	1	0	0	0	0	0	0	0	1	3732	1509	53	5		5	COL6A5	3	130110116	Silent	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	18797344	130110116	67912314	17	68511										
SLC2A9	0	genome.wustl.edu	37	chr4	9922065	9922065	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gacaatcacggtgaccacctGccagcggacgtagggagctc	13	13	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	4	9922065	9922065	G	C	SNP	SLC2A9	ENST00000264784	human	ensembl	69_37n	-1	known	missense	c.946	p.Q316E	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667	13	0	0	18	11	37.93	-	-	-	C	9922065	G	C	9922065	3	2	812	1	0	0	0	0	1	0	0	0	14641	1328	46	4	700	4	SLC2A9	4	9922065	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		9922065	181232211	18	68512										
YTHDC1	0	genome.wustl.edu	37	chr4	69179981	69179981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ttcacggggtctacttctccGgccactgacaacagcttgtg	10	13	3	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	4	69179981	69179981	G	A	SNP	YTHDC1	ENST00000344157	human	ensembl	69_37n	-1	known	missense	c.2020	p.R674W	0.999	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896	50	0	0	61	13	17.57	-	-	-	A	69179981	G	A	69179981	3	1	812	1	0	0	0	0	1	0	0	0	17593	1115	39	1	167	1	YTHDC1	4	69179981	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	59257916	69179981	121974295	19	68513										
NPNT	0	genome.wustl.edu	37	chr4	106890054	106890054	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgtgcattctctccctaggtCgtcttcaaaggtgaaaaaag	9	9	3	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	4	106890054	106890054	C	G	SNP	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	silent	c.1605	p.V535	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	59	0	0	93	16	14.68	-	-	-	G	106890054	C	G	106890054	2	3	812	1	0	0	0	0	0	0	0	1	10663	871	31	3		3	NPNT	4	106890054	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	37710073	106890054	84264222	20	68514										
PCDH18	0	genome.wustl.edu	37	chr4	138452231	138452231	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aaccttaattataattttgcAatgggctgggattgaatttg	9	4	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	4	138452231	138452231	A	C	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1012	p.C338G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	12	0	0	9	5	35.71	-	-	-	C	138452231	A	C	138452231	3	2	812	1	0	0	0	0	1	0	0	0	11586	130	5	5	2411	5	PCDH18	4	138452231	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	31562177	138452231	52702045	21	68515										
C4orf51	0	genome.wustl.edu	37	chr4	146601496	146601496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tcagattcttccgtgacaacAtacacaggcagttaccggaa	8	11	2	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	4	146601496	146601496	A	G	SNP	C4orf51	ENST00000511965	human	ensembl	69_37n	1	known	missense	c.20	p.H7R	0.314	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C4orf51	HGNC	ENSG00000237136	49	0	0	53	34	39.08	-	-	-	G	146601496	A	G	146601496	3	3	812	1	0	0	0	0	1	0	0	0	2298	204	8	5	143	5	C4orf51	4	146601496	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	8149265	146601496	44552780	22	68516										
PRKAA1	0	genome.wustl.edu	37	chr5	40771909	40771909	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	accaccatatgcctgtgacaAtaatccacaccagaaaggat	6	12	0	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	5	40771909	40771909	A	G	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	silent	c.465	p.Y155	0.962	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	22	0	0	36	8	18.18	-	-	-	G	40771909	A	G	40771909	2	3	812	1	0	0	0	0	0	0	0	1	12574	108	4	5		5	PRKAA1	5	40771909	Silent	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09		40771909	140143351	23	68517										
TMEM171	0	genome.wustl.edu	37	chr5	72419255	72419255	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	accagcaggacagacacgtcAgcaaactcatcttctgcttc	7	14	4	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	5	72419255	72419255	A	T	SNP	TMEM171	ENST00000454765	human	ensembl	69_37n	1	known	missense	c.55	p.S19C	0.991	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111	66	0	0	64	35	35.35	-	-	-	T	72419255	A	T	72419255	3	4	812	1	0	0	0	0	1	0	0	0	16183	188	7	5	57	5	TMEM171	5	72419255	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	31647346	72419255	108496005	24	68518										
DDX41	0	genome.wustl.edu	37	chr5	176942194	176942194	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agtccacactcacatggtggGgatgccctggatctgaatgg	13	10	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	5	176942194	176942194	G	C	SNP	DDX41	ENST00000507955	human	ensembl	69_37n	-1	known	missense	c.637	p.P213A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	70	0	0	60	50	45.45	-	-	-	C	176942194	G	C	176942194	3	2	812	1	0	0	0	0	1	0	0	0	4392	1232	43	4	1275	4	DDX41	5	176942194	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	104522939	176942194	3973066	25	68519										
NMBR	0	genome.wustl.edu	37	chr6	142409522	142409522	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cgggacgcaggtgagcagcaGcagcaagtccccggccgcca	15	15	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	6	142409522	142409522	G	C	SNP	NMBR	ENST00000258042	human	ensembl	69_37n	-1	known	missense	c.274	p.L92V	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMBR	HGNC	ENSG00000135577	27	0	0	26	15	36.59	-	-	-	C	142409522	G	C	142409522	3	2	812	1	0	0	0	0	1	0	0	0	10559	962	34	4	910	4	NMBR	6	142409522	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		142409522	28705545	26	68520										
HIVEP2	0	genome.wustl.edu	37	chr6	143091059	143091059	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aggccatgcggaccagcatgCcaacaggccgcttgtggccc	13	15	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	6	143091059	143091059	C	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	missense	c.4817	p.G1606V	0.985	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	30	0	0	9	8	47.06	-	-	-	A	143091059	C	A	143091059	3	1	812	1	0	0	0	0	1	0	0	0	7238	739	26	4	2547	4	HIVEP2	6	143091059	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	681537	143091059	28024008	27	68521										
MLLT4	0	genome.wustl.edu	37	chr6	168312024	168312024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tagctctacagtccactttaAgttgtcccctacatatgtat	5	11	1	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	6	168312024	168312024	A	C	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	1	known	missense	c.1892	p.K631T	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	67	0	0	27	16	37.21	-	-	-	C	168312024	A	C	168312024	3	2	812	1	0	0	0	0	1	0	0	0	9700	72	3	5	1950	5	MLLT4	6	168312024	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	25220965	168312024	2803043	28	68522										
SFRP4	0	genome.wustl.edu	37	chr7	37947171	37947171	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ttgggagcaggaggctttccCtttggtttggggggattact	16	6	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	7	37947171	37947171	C	G	SNP	SFRP4	ENST00000436072	human	ensembl	69_37n	-1	known	missense	c.951	p.K317N	0.994	NULL	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483	63	0	0	81	13	13.83	-	-	-	G	37947171	C	G	37947171	3	3	812	1	0	0	0	0	1	0	0	0	14251	680	24	4	93	4	SFRP4	7	37947171	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		37947171	121191492	29	68523										
RELN	0	genome.wustl.edu	37	chr7	103131244	103131244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgttagaagaggaaggaaggCactgggtctgtacgagctgc	16	6	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	7	103131244	103131244	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.9476	p.C3159Y	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	38	0	0	61	22	26.51	-	-	-	T	103131244	C	T	103131244	3	4	812	1	0	0	0	0	1	0	0	0	13303	710	25	4	934	4	RELN	7	103131244	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	65184073	103131244	56007419	30	68524										
SLC13A4	0	genome.wustl.edu	37	chr7	135377130	135377130	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tcccgggtaaaccacagtacGgtcatcaggatgaagaaaaa	10	9	2	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	7	135377130	135377130	G	T	SNP	SLC13A4	ENST00000354042	human	ensembl	69_37n	-1	known	silent	c.1161	p.T387	0.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	32	0	0	17	4	19.05	-	-	-	T	135377130	G	T	135377130	2	4	812	1	0	0	0	0	0	0	0	1	14483	1103	39	3		3	SLC13A4	7	135377130	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	32245886	135377130	23761533	31	68525										
PTPRN2	0	genome.wustl.edu	37	chr7	157364169	157364169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tggacaagaacggcccctgtAgcacttgtttacttttctga	9	10	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	7	157364169	157364169	A	G	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	missense	c.2869	p.Y957H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	35	0	0	37	7	15.91	-	-	-	G	157364169	A	G	157364169	3	3	812	1	0	0	0	0	1	0	0	0	12891	420	15	5	263	5	PTPRN2	7	157364169	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	21987039	157364169	1774494	32	68526										
TMEM74	0	genome.wustl.edu	37	chr8	109797275	109797275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ctcttgaactccagtccctgGcatcacagaggtctgcctgg	10	14	3	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	8	109797275	109797275	G	A	SNP	TMEM74	ENST00000297459	human	ensembl	69_37n	-1	known	missense	c.53	p.A18V	0.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	20	0	0	24	12	33.33	-	-	-	A	109797275	G	A	109797275	3	1	812	1	0	0	0	0	1	0	0	0	16297	1203	42	4	868	4	TMEM74	8	109797275	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		109797275	36566747	33	68527										
SVEP1	0	genome.wustl.edu	37	chr9	113233652	113233652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gaacagtcttaccacacataCgccctctcagcactgagcct	6	16	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	9	113233652	113233652	C	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.2990	p.R997L	0.997	superfamily_Growth_fac_rcpt	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	49	0	0	64	13	16.88	-	-	-	A	113233652	C	A	113233652	3	1	812	1	0	0	0	0	1	0	0	0	15511	536	19	3	7857	3	SVEP1	9	113233652	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		113233652	27979779	34	68528										
MUSK	0	genome.wustl.edu	37	chr9	113547204	113547204	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tactccatgactgtaataatCtccatcatgtccagctttgc	5	12	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	9	113547204	113547204	C	G	SNP	MUSK	ENST00000189978	human	ensembl	69_37n	1	known	missense	c.1512	p.I504M	0.997	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304	77	0	0	72	32	30.48	-	-	-	G	113547204	C	G	113547204	3	3	812	1	0	0	0	0	1	0	0	0	10061	903	32	2	1572	2	MUSK	9	113547204	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	313552	113547204	27666227	35	68529										
DNM1	0	genome.wustl.edu	37	chr9	131004517	131004517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ccatcaccctccaggtcatcCgcaagggctggctgactatc	9	16	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	9	131004517	131004517	C	T	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.1564	p.R522C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	31	0	0	56	34	37.78	-	-	-	T	131004517	C	T	131004517	3	4	812	1	0	0	0	0	1	0	0	0	4705	652	23	1	1617	1	DNM1	9	131004517	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	17457313	131004517	10208914	36	68530										
BMI1	0	genome.wustl.edu	37	chr10	22618336	22618336	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agtactccagtgcagtctccTcatccacagtttcctcacat	5	15	3	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	10	22618336	22618336	T	G	SNP	BMI1	ENST00000376663	human	ensembl	69_37n	1	known	silent	c.846	p.P282	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283	70	0	0	72	29	28.71	-	-	-	G	22618336	T	G	22618336	2	3	812	1	0	0	0	0	0	0	0	1	1460	1538	54	5		5	BMI1	10	22618336	Silent	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09		22618336	112916411	37	68531										
C10orf62	0	genome.wustl.edu	37	chr10	99349999	99349999	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	atccaccaggagtctggaaaAgccccatccactgatgaggc	10	13	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	10	99349999	99349999	A	T	SNP	C10orf62	ENST00000370640	human	ensembl	69_37n	1	known	missense	c.345	p.K115N	0.001	NULL	NULL	-	no_errors	C10orf62	HGNC	ENSG00000203942	11	0	0	20	6	23.08	-	-	-	T	99349999	A	T	99349999	3	4	812	1	0	0	0	0	1	0	0	0	1621	69	3	5	347	5	C10orf62	10	99349999	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	76731663	99349999	36184748	38	68532										
MUC5B	0	genome.wustl.edu	37	chr11	1268478	1268478	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	accacggccaccacacacggGcggtccctgccccccagcag	10	21	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	1268478	1268478	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.10377	p.G3459	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	275	0	0	292	99	25.26	-	-	-	A	1268478	G	A	1268478	2	1	812	1	0	0	0	0	0	0	0	1	10051	1190	42	4		4	MUC5B	11	1268478	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		1268478	133738038	39	68533										
KRTAP5-1	0	genome.wustl.edu	37	chr11	1606144	1606145	+	Frame_Shift_Ins	INS	-	-	G													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agccacccttggatcccccaINScaagagccacagcccccctt							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	1606144	1606145	-	G	INS	KRTAP5-1	ENST00000382171	human	ensembl	69_37n	-1	known	frame_shift_ins	c.336_335	p.G113fs	0.482:0.485	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869	9	0	0	9	4	30.77	-	-	-	G	1606145	-	G	1606144	7	5	812	1	0	1	1	0	0	0	0	0	8612	157	6	0	504	0	KRTAP5-1	11	1606144	Frame_Shift_Ins	INS	-	TCGA-E2-A1LA-01A-11D-A142-09	337666	1606144	133400372	40	68534										
C11orf40	0	genome.wustl.edu	37	chr11	4594648	4594648	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ggcctggtgtatgaacacatCcttatctaagttaaaggctc	9	9	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	4594648	4594648	C	G	SNP	C11orf40	ENST00000307616	human	ensembl	69_37n	-1	known	missense	c.196	p.D66H	0.000	NULL	NULL	-	no_errors	C11orf40	HGNC	ENSG00000171987	58	0	0	42	23	35.38	-	-	-	G	4594648	C	G	4594648	3	3	812	1	0	0	0	0	1	0	0	0	1650	855	30	2	468	2	C11orf40	11	4594648	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	2988504	4594648	130411868	41	68535										
SNX15	0	genome.wustl.edu	37	chr11	64803030	64803030	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gccctgcccaggaggccctgGatctcctctttaactgtgag	11	14	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	64803030	64803030	G	C	SNP	SNX15	ENST00000377244	human	ensembl	69_37n	1	known	missense	c.559	p.D187H	1.000	NULL	pfam_MIT,pfam_Phox,superfamily_Phox,smart_Phox,smart_MIT,pfscan_Phox	-	no_errors	SNX15	HGNC	ENSG00000110025	39	0	0	63	24	27.59	-	-	-	C	64803030	G	C	64803030	3	2	812	1	0	0	0	0	1	0	0	0	14975	1174	41	2	581	2	SNX15	11	64803030	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	60208382	64803030	70203486	42	68536										
SNX32	0	genome.wustl.edu	37	chr11	65620794	65620794	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aacacccttgttgccctaaaGggggagccttagagtagcca	11	11	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	65620794	65620794	G	C	SNP	SNX32	ENST00000308342	human	ensembl	69_37n	1	known	missense	c.1200	p.K400N	0.992	pirsf_Snx5_Snx6	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803	15	0	0	28	30	51.72	-	-	-	C	65620794	G	C	65620794	3	2	812	1	0	0	0	0	1	0	0	0	14991	991	35	4	1250	4	SNX32	11	65620794	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	817764	65620794	69385722	43	68537										
NUMA1	0	genome.wustl.edu	37	chr11	71726410	71726410	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tcttcaaggctgcccttggtGaccttcaaggactctttgag	10	11	4	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	71726410	71726410	G	T	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	silent	c.2139	p.V713	0.046	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	28	0	0	37	23	38.33	-	-	-	T	71726410	G	T	71726410	2	4	812	1	0	0	0	0	0	0	0	1	10823	1277	45	2		2	NUMA1	11	71726410	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	6105616	71726410	63280106	44	68538										
UBE4A	0	genome.wustl.edu	37	chr11	118257271	118257271	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gatgtttggacagctggcacGtttccataacatcatgtcca	9	10	1	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	11	118257271	118257271	G	C	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	missense	c.2552	p.R851P	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	22	0	0	36	8	18.18	-	-	-	C	118257271	G	C	118257271	3	2	812	1	0	0	0	0	1	0	0	0	16979	1145	40	3	2610	3	UBE4A	11	118257271	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	46530861	118257271	16749245	45	68539										
ANO4	0	genome.wustl.edu	37	chr12	101436158	101436158	+	Missense_Mutation	SNP	T	T	C													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tatattttgcctggttgggcTggtacaccggcatgctcttc							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	12	101436158	101436158	T	C	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	missense	c.1066	p.W356R	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	53	0	0	90	38	29.46	-	-	-	C	101436158	T	C	101436158	3	2	812	1	0	0	0	0	1	0	0	0	698	1580	55	5	999	5	ANO4	12	101436158	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09		101436158	32415737	46	68540	491	2								
ANO4	0	genome.wustl.edu	37	chr12	101436159	101436159	+	Nonsense_Mutation	SNP	G	G	A													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	atattttgcctggttgggctGgtacaccggcatgctcttcc							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	12	101436159	101436159	G	A	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	nonsense	c.1067	p.W356*	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	54	0	0	91	39	29.77	-	-	-	A	101436159	G	A	101436159	4	1	812	1	0	0	0	0	0	1	0	0	698	1357	47	4	1000	4	ANO4	12	101436159	Nonsense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	1	101436159	32415736	47	68541	491	2								
IFT88	0	genome.wustl.edu	37	chr13	21217606	21217606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgcataagatatgaattaatGgaaaatcccagtcaagctat	7	6	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	13	21217606	21217606	G	A	SNP	IFT88	ENST00000319980	human	ensembl	69_37n	1	known	missense	c.1722	p.M574I	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	41	0	0	47	21	30.88	-	-	-	A	21217606	G	A	21217606	3	1	812	1	0	0	0	0	1	0	0	0	7620	1348	47	4	1796	4	IFT88	13	21217606	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		21217606	93952272	48	68542										
OLFM4	0	genome.wustl.edu	37	chr13	53624150	53624150	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aacatcagcaaaccgtctgtGgttcagctcaactggagagg	11	10	4	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	13	53624150	53624150	G	T	SNP	OLFM4	ENST00000219022	human	ensembl	69_37n	1	known	silent	c.777	p.V259	0.024	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837	39	0	0	55	8	12.7	-	-	-	T	53624150	G	T	53624150	2	4	812	1	0	0	0	0	0	0	0	1	10928	1335	47	4		4	OLFM4	13	53624150	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	32406544	53624150	61545728	49	68543										
PLEKHH1	0	genome.wustl.edu	37	chr14	68042170	68042170	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgggaaaatcttctactactAtcggagccatgaggacaagg	11	8	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	14	68042170	68042170	A	C	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	missense	c.2150	p.Y717S	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	30	0	0	26	20	43.48	-	-	-	C	68042170	A	C	68042170	3	2	812	1	0	0	0	0	1	0	0	0	12150	449	16	5	2204	5	PLEKHH1	14	68042170	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09		68042170	39307370	50	68544										
DEGS2	0	genome.wustl.edu	37	chr14	100615659	100615659	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	accagccagagcagcttgcgGgcgggtgtgcagaagaacca	15	11	0	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	14	100615659	100615659	G	C	SNP	DEGS2	ENST00000305631	human	ensembl	69_37n	-1	known	silent	c.471	p.A157	0.997	pfam_Fatty_acid_desaturase-1,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS2	HGNC	ENSG00000168350	12	0	0	8	5	38.46	-	-	-	C	100615659	G	C	100615659	2	2	812	1	0	0	0	0	0	0	0	1	4459	1219	43	4		4	DEGS2	14	100615659	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	32573489	100615659	6733881	51	68545										
SPINT1	0	genome.wustl.edu	37	chr15	41145408	41145408	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgaaggatgtggaaaacacaGattggcgcctactgcggggt	15	7	0	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	15	41145408	41145408	G	T	SNP	SPINT1	ENST00000344051	human	ensembl	69_37n	1	known	missense	c.562	p.D188Y	0.204	NULL	pfam_Prot_inh_Kunz-m,pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_Prot_inh_Kunz-m,superfamily_LDrepeatLR_classA_rpt,superfamily_PKD_dom,smart_MANSC_N,smart_Prot_inh_Kunz-m,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	SPINT1	HGNC	ENSG00000166145	39	0	0	35	18	33.96	-	-	-	T	41145408	G	T	41145408	3	4	812	1	0	0	0	0	1	0	0	0	15159	942	33	2	568	2	SPINT1	15	41145408	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		41145408	61385984	52	68546										
RPAP1	0	genome.wustl.edu	37	chr15	41820178	41820178	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aaaccagcatccaaaaggagGcttaagacactgcctgctag	9	11	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	15	41820178	41820178	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	silent	c.1308	p.S436	0.851	superfamily_ARM-type_fold	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	24	0	0	13	10	43.48	-	-	-	A	41820178	G	A	41820178	2	1	812	1	0	0	0	0	0	0	0	1	13627	1194	42	4		4	RPAP1	15	41820178	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	674770	41820178	60711214	53	68547										
WDR72	0	genome.wustl.edu	37	chr15	54015063	54015063	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ccttgctcttgccaaacatgTtaccgaagctgaatgaccaa	7	12	1	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	15	54015063	54015063	T	A	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.196	p.T66S	0.982	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	37	0	0	29	16	35.56	-	-	-	A	54015063	T	A	54015063	3	1	812	1	0	0	0	0	1	0	0	0	17419	1725	60	5	3184	5	WDR72	15	54015063	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	12194885	54015063	48516329	54	68548										
PARP16	0	genome.wustl.edu	37	chr15	65553280	65553280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tcactcgcagcagctggttaTtggtgaccacgaagtacttg	11	10	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	15	65553280	65553280	T	C	SNP	PARP16	ENST00000261888	human	ensembl	69_37n	-1	known	missense	c.776	p.N259S	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP16	HGNC	ENSG00000138617	47	0	0	59	46	43.81	-	-	-	C	65553280	T	C	65553280	3	2	812	1	0	0	0	0	1	0	0	0	11533	1493	52	5	203	5	PARP16	15	65553280	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	11538217	65553280	36978112	55	68549										
ST3GAL2	0	genome.wustl.edu	37	chr16	70428926	70428926	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tccacgtcctgcccatagccAgagccccgcaggttgcccga	10	18	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	16	70428926	70428926	A	G	SNP	ST3GAL2	ENST00000342907	human	ensembl	69_37n	-1	known	silent	c.492	p.S164	0.941	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL2	HGNC	ENSG00000157350	20	0	0	18	16	47.06	-	-	-	G	70428926	A	G	70428926	2	3	812	1	0	0	0	0	0	0	0	1	15306	175	7	5		5	ST3GAL2	16	70428926	Silent	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09		70428926	19925827	56	68550										
KIF2B	0	genome.wustl.edu	37	chr17	51902147	51902147	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gggatgaatttattaaaataCcttatgtacagagtgaggag	11	3	0	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	17	51902147	51902147	C	G	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	missense	c.1753	p.P585A	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	37	0	0	46	14	23.33	-	-	-	G	51902147	C	G	51902147	3	3	812	1	0	0	0	0	1	0	0	0	8350	507	18	4	1755	4	KIF2B	17	51902147	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		51902147	29293063	57	68551										
SCN4A	0	genome.wustl.edu	37	chr17	62034778	62034778	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agatgaacacgatgatagccAgcaccagcgtcaggttaccc	10	12	1	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	17	62034778	62034778	A	G	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.2120	p.L707P	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	61	0	0	147	18	10.91	-	-	-	G	62034778	A	G	62034778	3	3	812	1	0	0	0	0	1	0	0	0	14008	188	7	5	3438	5	SCN4A	17	62034778	Missense_Mutation	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	10132631	62034778	19160432	58	68552										
C17orf80	0	genome.wustl.edu	37	chr17	71232434	71232434	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gttacagttactgagactccAgaaaagaacacagaatccct	7	10	0	4			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	17	71232434	71232434	A	G	SNP	C17orf80	ENST00000359042	human	ensembl	69_37n	1	known	silent	c.813	p.P271	0.000	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219	12	0	0	25	12	32.43	-	-	-	G	71232434	A	G	71232434	2	3	812	1	0	0	0	0	0	0	0	1	1901	175	7	5		5	C17orf80	17	71232434	Silent	SNP	A	TCGA-E2-A1LA-01A-11D-A142-09	9197656	71232434	9962776	59	68553										
TMX3	0	genome.wustl.edu	37	chr18	66354909	66354909	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	acatatgcttgttacctgtgTctccaagttcatacaagagg	8	9	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	18	66354909	66354909	T	A	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	missense	c.731	p.D244V	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	39	0	0	32	14	30.43	-	-	-	A	66354909	T	A	66354909	3	1	812	1	0	0	0	0	1	0	0	0	16363	1667	58	5	661	5	TMX3	18	66354909	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09		66354909	11722339	60	68554										
ZNF407	0	genome.wustl.edu	37	chr18	72345907	72345907	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aaaatgtatttcattctctaGatggagaagttaacagccat	7	6	2	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	18	72345907	72345907	G	T	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.2932	p.D978Y	0.854	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	10	0	0	29	6	17.14	-	-	-	T	72345907	G	T	72345907	3	4	812	1	0	0	0	0	1	0	0	0	17983	942	33	2	2934	2	ZNF407	18	72345907	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	5990998	72345907	5731341	61	68555										
JSRP1	0	genome.wustl.edu	37	chr19	2254465	2254465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tggggcacgctgccggagtcGgccagcctgggtgtcgctgt	18	12	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	2254465	2254465	G	A	SNP	JSRP1	ENST00000300961	human	ensembl	69_37n	-1	known	silent	c.126	p.A42	0.004	NULL	NULL	-	no_errors	JSRP1	HGNC	ENSG00000167476	18	0	0	19	8	29.63	-	-	-	A	2254465	G	A	2254465	2	1	812	1	0	0	0	0	0	0	0	1	8020	1103	39	1		1	JSRP1	19	2254465	Silent	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		2254465	56874518	62	68556										
PLIN3	0	genome.wustl.edu	37	chr19	4852082	4852082	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cgcccactcctccgacttccCcagcaccgtgtcgaccccac	6	23	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	4852082	4852082	C	G	SNP	PLIN3	ENST00000221957	human	ensembl	69_37n	-1	known	missense	c.580	p.G194R	1.000	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN3	HGNC	ENSG00000105355	22	0	0	19	11	36.67	-	-	-	G	4852082	C	G	4852082	3	3	812	1	0	0	0	0	1	0	0	0	12165	623	22	4	740	4	PLIN3	19	4852082	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	2597617	4852082	54276901	63	68557										
OR7D2	0	genome.wustl.edu	37	chr19	9296482	9296482	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aagcaggaaaccaaacaggaTttttagagtttatccttctc	7	8	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	9296482	9296482	T	A	SNP	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	missense	c.25	p.F9I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	17	0	0	56	19	25.33	-	-	-	A	9296482	T	A	9296482	3	1	812	1	0	0	0	0	1	0	0	0	11292	1493	52	5	27	5	OR7D2	19	9296482	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	4444400	9296482	49832501	64	68558										
ASNA1	0	genome.wustl.edu	37	chr19	12858838	12858838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgaagctgccgctgttacccCatgaggtgcggggggcagac	16	11	0	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	12858838	12858838	C	A	SNP	ASNA1	ENST00000357332	human	ensembl	69_37n	1	known	missense	c.967	p.H323N	1.000	pfam_Anion-transp_ATPase-like_dom,tigrfam_ATPase_ArsA/Get3	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,tigrfam_ATPase_ArsA/Get3	-	no_errors	ASNA1	HGNC	ENSG00000198356	19	0	0	29	6	17.14	-	-	-	A	12858838	C	A	12858838	3	1	812	1	0	0	0	0	1	0	0	0	1051	594	21	4	993	4	ASNA1	19	12858838	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	3562356	12858838	46270145	65	68559										
TGFB1	0	genome.wustl.edu	37	chr19	41838160	41838160	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ggaagtcaatgtacagctgcCgcacgcagcagttcttctcc	10	13	3	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	41838160	41838160	C	G	SNP	TGFB1	ENST00000221930	human	ensembl	69_37n	-1	known	missense	c.887	p.R296P	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_TGFb1,prints_TGF-beta	-	no_errors	TGFB1	HGNC	ENSG00000105329	27	0	0	19	15	44.12	-	-	-	G	41838160	C	G	41838160	3	3	812	1	0	0	0	0	1	0	0	0	15911	652	23	3	293	3	TGFB1	19	41838160	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	28979322	41838160	17290823	66	68560										
ZNF835	0	genome.wustl.edu	37	chr19	57176314	57176314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cttcgggctctccccaggcgCgctgcacctccgggaactgc	12	18	1	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	19	57176314	57176314	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	69_37n	-1	known	missense	c.253	p.A85T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	62	0	0	57	21	26.58	-	-	-	T	57176314	C	T	57176314	3	4	812	1	0	0	0	0	1	0	0	0	18279	768	27	1	1362	1	ZNF835	19	57176314	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	15338154	57176314	1952669	67	68561										
DEFB127	0	genome.wustl.edu	37	chr20	139457	139457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	ctggaataactatgtacaagGacattgcaggaaaatctgca	9	7	1	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	20	139457	139457	G	A	SNP	DEFB127	ENST00000382388	human	ensembl	69_37n	1	known	missense	c.92	p.G31E	0.169	NULL	NULL	-	no_errors	DEFB127	HGNC	ENSG00000088782	27	0	0	23	12	34.29	-	-	-	A	139457	G	A	139457	3	1	812	1	0	0	0	0	1	0	0	0	4448	1174	41	2	98	2	DEFB127	20	139457	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09		139457	62886063	68	68562										
CRNKL1	0	genome.wustl.edu	37	chr20	20033061	20033061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gctctgagagctcaccgaaaCcacaaagctttcagaaaaca	7	12	3	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	20	20033061	20033061	C	G	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.409	p.V137L	0.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	22	0	0	43	11	20.37	-	-	-	G	20033061	C	G	20033061	3	3	812	1	0	0	0	0	1	0	0	0	3921	507	18	4	2193	4	CRNKL1	20	20033061	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	19893604	20033061	42992459	69	68563										
EYA2	0	genome.wustl.edu	37	chr20	45702958	45702958	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cacaacgtccccaaccagagTtccgagtcacttgctggtag	9	14	1	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	20	45702958	45702958	T	C	SNP	EYA2	ENST00000497062	human	ensembl	69_37n	1	known	missense	c.572	p.V191A	1.000	NULL	NULL	-	no_errors	EYA2	HGNC	ENSG00000064655	28	0	0	52	13	20	-	-	-	C	45702958	T	C	45702958	3	2	812	1	0	0	0	0	1	0	0	0	5366	1722	60	5	667	5	EYA2	20	45702958	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	25669897	45702958	17322562	70	68564										
ZNF831	0	genome.wustl.edu	37	chr20	57768111	57768111	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	acccaagacaggaggaccccTgtccatgaggacatatccgc	10	14	0	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	20	57768111	57768111	T	A	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	silent	c.2037	p.P679	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	14	0	0	27	11	28.95	-	-	-	A	57768111	T	A	57768111	2	1	812	1	0	0	0	0	0	0	0	1	18278	1567	55	5		5	ZNF831	20	57768111	Silent	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	12065153	57768111	5257409	71	68565										
CECR2	0	genome.wustl.edu	37	chr22	17983949	17983950	+	Frame_Shift_Del	DEL	CG	CG	-													0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	gaggaatggagacaggtcacCgagagttttcgcgagaggac							TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	22	17983949	17983950	CG	-	DEL	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	frame_shift_del	c.705_706	p.S237fs	0.002:1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	26	0	0	38	21	33.87	-	-	-	-	17983950	CG	-	17983949	7	5	812	1	0	1	0	1	0	0	0	0	3235	639	23	0	669	0	CECR2	22	17983949	Frame_Shift_Del	DEL	CG	TCGA-E2-A1LA-01A-11D-A142-09		17983949	33320617	72	68566										
SFI1	0	genome.wustl.edu	37	chr22	31998278	31998278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	aaaccgcctggcagagagaaTggtaaatggctgtccctgag	13	9	0	3			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	22	31998278	31998278	T	C	SNP	SFI1	ENST00000400288	human	ensembl	69_37n	1	known	missense	c.1625	p.M542T	1.000	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	60	0	0	40	16	28.57	-	-	-	C	31998278	T	C	31998278	3	2	812	1	0	0	0	0	1	0	0	0	14244	1478	51	5	1683	5	SFI1	22	31998278	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	14014329	31998278	19306288	73	68567										
WBP2NL	0	genome.wustl.edu	37	chr22	42422812	42422812	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tgcaggatatggagccccacCtcccggatacggagccccac	11	16	0	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	22	42422812	42422812	C	G	SNP	WBP2NL	ENST00000328823	human	ensembl	69_37n	1	known	missense	c.557	p.P186R	0.184	pfam_WW-domain-binding	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2NL	HGNC	ENSG00000183066	33	0	0	27	12	30.77	-	-	-	G	42422812	C	G	42422812	3	3	812	1	0	0	0	0	1	0	0	0	17357	681	24	4	579	4	WBP2NL	22	42422812	Missense_Mutation	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	10424534	42422812	8881754	74	68568										
ASMT	0	genome.wustl.edu	37	chrX	1743208	1743208	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	agcgactacctgaccacggtCagcccgacgtcacaatgcag	10	15	2	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	X	1743208	1743208	C	G	SNP	ASMT	ENST00000381241	human	ensembl	69_37n	1	known	silent	c.291	p.V97	0.119	pfam_O_MeTrfase_2,pirsf_O-MeTrfase_CAOMT-type	pfam_O_MeTrfase_2,pirsf_O-MeTrfase_CAOMT-type	-	no_errors	ASMT	HGNC	ENSG00000196433	44	0	0	39	18	31.58	-	-	-	G	1743208	C	G	1743208	2	3	812	1	0	0	0	0	0	0	0	1	1049	813	29	2		2	ASMT	23	1743208	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09		1743208	153527352	75	68569										
GNL3L	0	genome.wustl.edu	37	chrX	54578044	54578044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	acaagttcatccggctcttgGatgctccaggcattgtccca	9	13	2	0			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	X	54578044	54578044	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.907	p.D303N	1.000	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	23	0	0	34	11	24.44	-	-	-	A	54578044	G	A	54578044	3	1	812	1	0	0	0	0	1	0	0	0	6590	1174	41	2	945	2	GNL3L	23	54578044	Missense_Mutation	SNP	G	TCGA-E2-A1LA-01A-11D-A142-09	52834836	54578044	100692516	76	68570										
POF1B	0	genome.wustl.edu	37	chrX	84563184	84563184	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	cgtatgttgctaaatgtggaCagcactagtcggagtgactt	12	7	0	1			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	X	84563184	84563184	C	A	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	silent	c.996	p.L332	0.983	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	44	0	0	55	18	24.66	-	-	-	A	84563184	C	A	84563184	2	1	812	1	0	0	0	0	0	0	0	1	12256	465	17	4		4	POF1B	23	84563184	Silent	SNP	C	TCGA-E2-A1LA-01A-11D-A142-09	29985140	84563184	70707376	77	68571										
THOC2	0	genome.wustl.edu	37	chrX	122754799	122754799	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.038961038961039	3	0.994628167771038	0.698028673835125	1.32258064516129	0	0.181818181818182	0.738198193588003	0	tggagaagggtgagtatcaaTtttgcggcgtttttgttctg	14	4	2	2			TCGA-E2-A1LA-01A-11D-A142-09	TCGA-E2-A1LA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdcd4800-3258-446f-b6e5-3c8e2f46c656	d3d4282c-2865-42e6-b9b3-0d69ffd11ccb	X	122754799	122754799	T	A	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.4234	p.I1412F	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	47	0	0	53	16	23.19	-	-	-	A	122754799	T	A	122754799	3	1	812	1	0	0	0	0	1	0	0	0	15960	1493	52	5	575	5	THOC2	23	122754799	Missense_Mutation	SNP	T	TCGA-E2-A1LA-01A-11D-A142-09	38191615	122754799	32515761	78	68572										
EIF2C4	0	genome.wustl.edu	37	chr1	36297703	36297703	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gacctgatccataccttaaaGaatttggtattgttgtccac	7	9	0	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	36297703	36297703	G	A	SNP	EIF2C4	ENST00000373210	human	ensembl	69_37n	1	known	missense	c.1162	p.E388K	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C4	HGNC	ENSG00000134698	53	0	0	39	19	32.76	-	-	-	A	36297703	G	A	36297703	3	1	813	1	0	0	0	0	1	0	0	0	5043	943	33	2	1200	2	EIF2C4	1	36297703	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		36297703	212952918	1	68573										
HRNR	0	genome.wustl.edu	37	chr1	152188769	152188769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tagaaccatgctgtccttggCtacagaagtgccctgagcca	10	12	0	3			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	152188769	152188769	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5336	p.S1779N	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	16	0	0	16	4	20	-	-	-	T	152188769	C	T	152188769	3	4	813	1	0	0	0	0	1	0	0	0	7410	797	28	4	3220	4	HRNR	1	152188769	Missense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	115891066	152188769	97061852	2	68574										
IFI16	0	genome.wustl.edu	37	chr1	158985687	158985687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ggaccagccctatcaagaaaGaggaagaaggaagtggatgc	14	7	1	3			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	158985687	158985687	G	C	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.291	p.K97N	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	30	0	0	29	11	27.5	-	-	-	C	158985687	G	C	158985687	3	2	813	1	0	0	0	0	1	0	0	0	7565	933	33	2	297	2	IFI16	1	158985687	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	6796918	158985687	90264934	3	68575										
PIK3C2B	0	genome.wustl.edu	37	chr1	204425124	204425124	+	Silent	SNP	G	G	A													0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	aagtctgcgttgaatgtgttGcagtacagctccaccaggtc							TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	204425124	204425124	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.1803	p.C601	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	36	0	0	19	6	24	-	-	-	A	204425124	G	A	204425124	2	1	813	1	0	0	0	0	0	0	0	1	11984	1311	46	4		4	PIK3C2B	1	204425124	Silent	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	45439437	204425124	44825497	4	68576	492	2								
PIK3C2B	0	genome.wustl.edu	37	chr1	204425125	204425125	+	Missense_Mutation	SNP	C	C	G													0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	agtctgcgttgaatgtgttgCagtacagctccaccaggtcc							TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	204425125	204425125	C	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.1802	p.C601S	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	36	0	0	21	6	22.22	-	-	-	G	204425125	C	G	204425125	3	3	813	1	0	0	0	0	1	0	0	0	11984	710	25	4	3194	4	PIK3C2B	1	204425125	Missense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	1	204425125	44825496	5	68577	492	2								
ADD2	0	genome.wustl.edu	37	chr2	70905967	70905967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ctgggcatgctgtcgcagggCgggcaccggggcaccgtcct	17	14	0	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	70905967	70905967	C	T	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.1252	p.A418T	0.055	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	46	0	0	42	18	29.51	-	-	-	T	70905967	C	T	70905967	3	4	813	1	0	0	0	0	1	0	0	0	305	768	27	1	1129	1	ADD2	2	70905967	Missense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09		70905967	172293406	6	68578										
LRP1B	0	genome.wustl.edu	37	chr2	141806595	141806595	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ctctctgtgccatctatcttCtgccggccaattaggaaact	7	13	4	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	141806595	141806595	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.1749	p.Q583	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	71	0	0	71	28	28.28	-	-	-	T	141806595	C	T	141806595	2	4	813	1	0	0	0	0	0	0	0	1	9021	912	32	2		2	LRP1B	2	141806595	Silent	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	70900628	141806595	101392778	7	68579										
BZW1	0	genome.wustl.edu	37	chr2	201682951	201682951	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	aaattcttcttttaggaactCtttcctgccaataagcaaag	5	9	3	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	201682951	201682951	C	T	SNP	BZW1	ENST00000409600	human	ensembl	69_37n	1	known	silent	c.654	p.L218	0.974	NULL	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153	33	0	0	21	14	40	-	-	-	T	201682951	C	T	201682951	2	4	813	1	0	0	0	0	0	0	0	1	1587	900	32	2		2	BZW1	2	201682951	Silent	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	59876356	201682951	41516422	8	68580										
SCN5A	0	genome.wustl.edu	37	chr3	38647465	38647465	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gtgttctttcttgagcatttCcatggcctcctggaagcgct	10	11	2	1			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	38647465	38647465	C	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	nonsense	c.1315	p.E439*	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	33	0	0	28	14	33.33	-	-	-	A	38647465	C	A	38647465	4	1	813	1	0	0	0	0	0	1	0	0	14010	864	30	2	4811	2	SCN5A	3	38647465	Nonsense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09		38647465	159374965	9	68581										
SMC4	0	genome.wustl.edu	37	chr3	160148495	160148497	+	In_Frame_Del	DEL	AGC	AGC	-													0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ctgaaaagtcttgaggacaaAgcagcagaggtcgtaaagaa							TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148495	160148497	AGC	-	DEL	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	in_frame_del	c.2904_2906	p.A970in_frame_del	0.369:0.991:0.993	pfam_RecF/RecN/SMC,superfamily_Prefoldin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	29	0	0	44	12	21.43	-	-	-	-	160148497	AGC	-	160148495	7	5	813	1	0	1	0	1	0	0	0	0	14874	69	3	0	2974	0	SMC4	3	160148495	In_Frame_Del	DEL	AGC	TCGA-E2-A1LB-01A-11D-A142-09	121501030	160148495	37873935	10	68582										
SMC4	0	genome.wustl.edu	37	chr3	160148940	160148941	+	Frame_Shift_Del	DEL	AT	AT	-													0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ttaagttgaaacttgaacaaAtagatggtcacattgctgaa							TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148940	160148941	AT	-	DEL	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	frame_shift_del	c.3061_3062	p.I1021fs	0.993:1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	31	0	0	16	4	20	-	-	-	-	160148941	AT	-	160148940	7	5	813	1	0	1	0	1	0	0	0	0	14874	101	4	0	3135	0	SMC4	3	160148940	Frame_Shift_Del	DEL	AT	TCGA-E2-A1LB-01A-11D-A142-09	445	160148940	37873490	11	68583										
IBSP	0	genome.wustl.edu	37	chr4	88723821	88723821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tgcaggtctttaagtacaggCcacgatattatctttacaag	8	8	2	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	88723821	88723821	C	T	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	1	known	missense	c.121	p.P41S	1.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	58	0	0	33	16	32.65	-	-	-	T	88723821	C	T	88723821	3	4	813	1	0	0	0	0	1	0	0	0	7529	739	26	4	131	4	IBSP	4	88723821	Missense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09		88723821	102430455	12	68584										
EMCN	0	genome.wustl.edu	37	chr4	101396227	101396227	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ttgttaaaaaagtagctgttGacatcagagacattttaagt	8	4	1	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	101396227	101396227	G	C	SNP	EMCN	ENST00000296420	human	ensembl	69_37n	-1	known	nonsense	c.227	p.S76*	0.002	pfam_Endomucin	pfam_Endomucin	-	no_errors	EMCN	HGNC	ENSG00000164035	60	0	0	37	12	24.49	-	-	-	C	101396227	G	C	101396227	4	2	813	1	0	0	0	0	0	1	0	0	5123	1294	45	2	594	2	EMCN	4	101396227	Nonsense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	12672406	101396227	89758049	13	68585										
LYSMD3	0	genome.wustl.edu	37	chr5	89814775	89814775	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gtgatgggggtgtgatttttGaatgtaaatgtgaagagtcc	15	2	0	5			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	89814775	89814775	G	C	SNP	LYSMD3	ENST00000315948	human	ensembl	69_37n	-1	known	nonsense	c.782	p.S261*	1.000	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD3	HGNC	ENSG00000176018	62	0	0	43	22	33.85	-	-	-	C	89814775	G	C	89814775	4	2	813	1	0	0	0	0	0	1	0	0	9193	1294	45	2	142	2	LYSMD3	5	89814775	Nonsense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		89814775	91100485	14	68586										
CHSY3	0	genome.wustl.edu	37	chr5	129520402	129520402	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tcattgacttcaaggaaattCagtatggctaccgcagagtt	9	8	3	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	129520402	129520402	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	nonsense	c.1567	p.Q523*	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	23	0	0	24	8	25	-	-	-	T	129520402	C	T	129520402	4	4	813	1	0	0	0	0	0	1	0	0	3442	827	29	2	1577	2	CHSY3	5	129520402	Nonsense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	39705627	129520402	51394858	15	68587										
NR3C1	0	genome.wustl.edu	37	chr5	142680112	142680112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gccctcctaacatgttgagcGtagtcatgatcctccaagtt	8	12	1	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	142680112	142680112	G	A	SNP	NR3C1	ENST00000231509	human	ensembl	69_37n	-1	known	missense	c.1688	p.T563M	0.996	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580	54	0	0	36	14	28	-	-	-	A	142680112	G	A	142680112	3	1	813	1	0	0	0	0	1	0	0	0	10703	1145	40	1	720	1	NR3C1	5	142680112	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	13159710	142680112	38235148	16	68588										
PNRC1	0	genome.wustl.edu	37	chr6	89793494	89793494	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tttaaaatcaaagatgggaaAatcggagaaaattgcccttc	8	6	1	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	6	89793494	89793494	A	C	SNP	PNRC1	ENST00000336032	human	ensembl	69_37n	1	known	missense	c.563	p.K188T	1.000	NULL	NULL	-	no_errors	PNRC1	HGNC	ENSG00000146278	18	0	0	15	10	40	-	-	-	C	89793494	A	C	89793494	3	2	813	1	0	0	0	0	1	0	0	0	12248	14	1	5	569	5	PNRC1	6	89793494	Missense_Mutation	SNP	A	TCGA-E2-A1LB-01A-11D-A142-09		89793494	81321573	17	68589										
ABL1	0	genome.wustl.edu	37	chr9	133729582	133729582	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	accttttcgttgcactgtatGattttgtggccagtggagat	11	7	0	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	133729582	133729582	G	A	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.268	p.D90N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	38	0	0	31	9	22.5	-	-	-	A	133729582	G	A	133729582	3	1	813	1	0	0	0	0	1	0	0	0	92	1290	45	2	357	2	ABL1	9	133729582	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		133729582	7483849	18	68590										
CAMSAP1	0	genome.wustl.edu	37	chr9	138714464	138714464	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	aatccgccaagggccagaggCccaccacagacctctcctgc	9	18	1	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	138714464	138714464	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.2076	p.G692	0.017	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	30	0	0	25	9	26.47	-	-	-	A	138714464	C	A	138714464	2	1	813	1	0	0	0	0	0	0	0	1	2636	726	26	4		4	CAMSAP1	9	138714464	Silent	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	4984882	138714464	2498967	19	68591										
MGEA5	0	genome.wustl.edu	37	chr10	103563692	103563692	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	aatcattagcatgaatgttaTcccagattactggagctctc	7	9	2	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	103563692	103563692	T	A	SNP	MGEA5	ENST00000361464	human	ensembl	69_37n	-1	known	missense	c.836	p.D279V	1.000	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	60	0	0	41	19	31.67	-	-	-	A	103563692	T	A	103563692	3	1	813	1	0	0	0	0	1	0	0	0	9626	1435	50	5	1954	5	MGEA5	10	103563692	Missense_Mutation	SNP	T	TCGA-E2-A1LB-01A-11D-A142-09		103563692	31971055	20	68592										
KNDC1	0	genome.wustl.edu	37	chr10	135025332	135025332	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	cccttcaacgccctctgtaaGaggctctcagaggacggcat	10	14	3	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	135025332	135025332	G	C	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	1	known	missense	c.4212	p.K1404N	0.987	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	12	0	0	4	4	50	-	-	-	C	135025332	G	C	135025332	3	2	813	1	0	0	0	0	1	0	0	0	8479	933	33	2	4296	2	KNDC1	10	135025332	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	31461640	135025332	509415	21	68593										
MUC6	0	genome.wustl.edu	37	chr11	1016406	1016406	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	agggggcagaaggactgggaGaaaatgaggaggacagctga	19	4	0	4			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	1016406	1016406	G	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.6395	p.S2132F	0.014	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	56	0	0	67	27	28.72	-	-	-	A	1016406	G	A	1016406	3	1	813	1	0	0	0	0	1	0	0	0	10052	942	33	2	936	2	MUC6	11	1016406	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		1016406	133990110	22	68594										
DDI1	0	genome.wustl.edu	37	chr11	103907556	103907556	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gcccgggcccccgccatgctGatcaccgtgtactgcgtgcg	13	17	1	1			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	103907556	103907556	G	A	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	silent	c.6	p.L2	0.967	pfscan_Ubiquitin_supergroup	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	10	0	0	8	5	38.46	-	-	-	A	103907556	G	A	103907556	2	1	813	1	0	0	0	0	0	0	0	1	4359	1277	45	2		2	DDI1	11	103907556	Silent	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	102891150	103907556	31098960	23	68595										
A2ML1	0	genome.wustl.edu	37	chr12	8998092	8998092	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	agaaacacctgaactctaagAagaaaggtgagtgtacatgc	10	7	1	5			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	8998092	8998092	A	T	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	1	known	nonsense	c.1531	p.K511*	0.136	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	41	0	0	35	16	31.37	-	-	-	T	8998092	A	T	8998092	4	4	813	1	0	0	0	0	0	1	0	0	5	247	9	5	1581	5	A2ML1	12	8998092	Nonsense_Mutation	SNP	A	TCGA-E2-A1LB-01A-11D-A142-09		8998092	124853803	24	68596										
KRT79	0	genome.wustl.edu	37	chr12	53227620	53227620	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	gggtcttgatctgctcccgcTcctgagtgcgcactcgctgg	13	14	2	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	53227620	53227620	T	C	SNP	KRT79	ENST00000330553	human	ensembl	69_37n	-1	known	missense	c.425	p.E142G	1.000	pfam_F	pfam_F,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640	50	0	0	39	12	23.53	-	-	-	C	53227620	T	C	53227620	3	2	813	1	0	0	0	0	1	0	0	0	8545	1551	54	5	1218	5	KRT79	12	53227620	Missense_Mutation	SNP	T	TCGA-E2-A1LB-01A-11D-A142-09	44229528	53227620	80624275	25	68597										
FBXW8	0	genome.wustl.edu	37	chr12	117387426	117387426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	cccttttcctcacgcagaatCgcaaaggtgccgtgagcgag	11	13	1	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	117387426	117387426	C	T	SNP	FBXW8	ENST00000309909	human	ensembl	69_37n	1	known	missense	c.592	p.R198C	1.000	superfamily_F-box_dom_cyclin-like,smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_Quinonprotein_ADH-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989	40	0	0	40	12	23.08	-	-	-	T	117387426	C	T	117387426	3	4	813	1	0	0	0	0	1	0	0	0	5816	884	31	1	606	1	FBXW8	12	117387426	Missense_Mutation	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	64159806	117387426	16464469	26	68598										
TMCO3	0	genome.wustl.edu	37	chr13	114154394	114154394	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tagcatgctgattgactcccAgaacaaccagtatattttga	7	9	0	4			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	13	114154394	114154394	A	T	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	missense	c.746	p.Q249L	1.000	NULL	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	56	0	0	41	16	28.07	-	-	-	T	114154394	A	T	114154394	3	4	813	1	0	0	0	0	1	0	0	0	16092	188	7	5	756	5	TMCO3	13	114154394	Missense_Mutation	SNP	A	TCGA-E2-A1LB-01A-11D-A142-09		114154394	1015484	27	68599										
TP53BP1	0	genome.wustl.edu	37	chr15	43701236	43701236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	cactggcaaggcacaggaagTacttccgggttcgacaatgc	12	11	0	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	15	43701236	43701236	T	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.5459	p.Y1820C	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	53	0	0	32	23	41.82	-	-	-	C	43701236	T	C	43701236	3	2	813	1	0	0	0	0	1	0	0	0	16479	1638	57	5	486	5	TP53BP1	15	43701236	Missense_Mutation	SNP	T	TCGA-E2-A1LB-01A-11D-A142-09		43701236	58830156	28	68600										
CRISPLD2	0	genome.wustl.edu	37	chr16	84888433	84888433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	caggaacaacttgtgttaccGaggtaggaaatttactccca	9	9	0	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	84888433	84888433	G	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	69_37n	1	known	missense	c.707	p.R236Q	1.000	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196	41	0	0	23	13	36.11	-	-	-	A	84888433	G	A	84888433	3	1	813	1	0	0	0	0	1	0	0	0	3913	1058	37	1	725	1	CRISPLD2	16	84888433	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		84888433	5466320	29	68601										
ACE	0	genome.wustl.edu	37	chr17	61557814	61557814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	acctgaacctccatgccttcGtccgccgcgcactgcatcgc	8	19	0	1			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	61557814	61557814	G	A	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	missense	c.772	p.V258I	1.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	35	0	0	26	16	38.1	-	-	-	A	61557814	G	A	61557814	3	1	813	1	0	0	0	0	1	0	0	0	136	1145	40	1	790	1	ACE	17	61557814	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09		61557814	19637396	30	68602										
RNF213	0	genome.wustl.edu	37	chr17	78318644	78318644	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tttccaaagaccttaccagtAtttaagacgattcaatcaaa	4	9	2	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	78318644	78318644	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.6509	p.Y2170C	0.998	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	46	0	0	41	26	38.81	-	-	-	G	78318644	A	G	78318644	3	3	813	1	0	0	0	0	1	0	0	0	13563	449	16	5	6938	5	RNF213	17	78318644	Missense_Mutation	SNP	A	TCGA-E2-A1LB-01A-11D-A142-09	16760830	78318644	2876566	31	68603										
MUC16	0	genome.wustl.edu	37	chr19	9076601	9076601	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	cttgaggctaagaatgaagtTgtatgcattgtggaaattgt	12	3	0	3			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	9076601	9076601	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.10845	p.T3615	0.036	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	83	0	0	45	16	26.23	-	-	-	G	9076601	T	G	9076601	2	3	813	1	0	0	0	0	0	0	0	1	10045	1799	63	5		5	MUC16	19	9076601	Silent	SNP	T	TCGA-E2-A1LB-01A-11D-A142-09		9076601	50052382	32	68604										
NACC1	0	genome.wustl.edu	37	chr19	13247176	13247176	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	aaccgctgccaccccaagctCtacgacgagggcgacccctc	9	19	1	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	13247176	13247176	C	G	SNP	NACC1	ENST00000292431	human	ensembl	69_37n	1	known	silent	c.1077	p.L359	1.000	NULL	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877	32	0	0	11	12	52.17	-	-	-	G	13247176	C	G	13247176	2	3	813	1	0	0	0	0	0	0	0	1	10207	900	32	2		2	NACC1	19	13247176	Silent	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09	4170575	13247176	45881807	33	68605										
PLA2G6	0	genome.wustl.edu	37	chr22	38509509	38509509	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	ctcacacagtccaccaccatCttgcccagttccttggcccc	5	20	2	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	22	38509509	38509509	C	T	SNP	PLA2G6	ENST00000332509	human	ensembl	69_37n	-1	known	silent	c.2187	p.K729	0.997	superfamily_Acyl_Trfase/lysoPLipase	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381	38	0	0	26	8	23.53	-	-	-	T	38509509	C	T	38509509	2	4	813	1	0	0	0	0	0	0	0	1	12082	912	32	2		2	PLA2G6	22	38509509	Silent	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09		38509509	12795057	34	68606										
ZNF630	0	genome.wustl.edu	37	chrX	47926259	47926259	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	agtggcaaacaaataacttaCctgggactcaatcattttct	6	9	3	0			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	47926259	47926259	C	T	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	splice_site	c.15+1	e1+1	0.010	-	-	-	no_errors	ZNF630	HGNC	ENSG00000221994	76	0	0	51	29	36.25	-	-	-	T	47926259	C	T	47926259	5	4	813	1	0	0	0	0	0	0	1	0	18150	521	18	4	1973	4	ZNF630	23	47926259	Splice_Site	SNP	C	TCGA-E2-A1LB-01A-11D-A142-09		47926259	107344301	35	68607										
VSIG1	0	genome.wustl.edu	37	chrX	107316026	107316026	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.4	14	3.51577009903344e-06	4.42033235581623	6.94623655913978	3.47311827956989	0.706390272356082	1	11	tgtactactggcataaacttGagggaagagacatcgtgcca	11	8	0	2			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	107316026	107316026	G	C	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	missense	c.640	p.E214Q	0.923	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	56	0	0	54	26	32.5	-	-	-	C	107316026	G	C	107316026	3	2	813	1	0	0	0	0	1	0	0	0	17319	1291	45	2	658	2	VSIG1	23	107316026	Missense_Mutation	SNP	G	TCGA-E2-A1LB-01A-11D-A142-09	59389767	107316026	47954534	36	68608										
TRIM46	0	genome.wustl.edu	37	chr1	155154369	155154369	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gccgctggggcgcaagccgaGagcggctggctatcagcaag	17	12	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	155154369	155154369	G	C	SNP	TRIM46	ENST00000334634	human	ensembl	69_37n	1	known	missense	c.1630	p.E544Q	1.000	pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	122	0	0	110	45	29.03	-	-	-	C	155154369	G	C	155154369	3	2	814	1	0	0	0	0	1	0	0	0	16617	943	33	2	1664	2	TRIM46	1	155154369	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		155154369	94096252	1	68609										
GON4L	0	genome.wustl.edu	37	chr1	155791266	155791266	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtgataatcaactactcacaAacattggcatatcttccgtc	5	11	3	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	155791266	155791266	A	C	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.962	p.F321C	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	48	0	0	27	15	35.71	-	-	-	C	155791266	A	C	155791266	3	2	814	1	0	0	0	0	1	0	0	0	6621	28	1	5	5989	5	GON4L	1	155791266	Missense_Mutation	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	636897	155791266	93459355	2	68610										
RABGAP1L	0	genome.wustl.edu	37	chr1	174927026	174927026	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cataatatttcttttctttcAgtttgtatatttgtaggtaa	5	4	3	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	174927026	174927026	A	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	69_37n	1	known	splice_site	c.2434-2	e20-2	1.000	-	-	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	68	0	0	60	16	21.05	-	-	-	C	174927026	A	C	174927026	5	2	814	1	0	0	0	0	0	0	1	0	13048	202	7	5	2625	5	RABGAP1L	1	174927026	Splice_Site	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	19135760	174927026	74323595	3	68611										
LAD1	0	genome.wustl.edu	37	chr1	201352318	201352318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ctcagtgcaaggcagaccccGagacttgacagattctgatc	10	12	2	5			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	201352318	201352318	G	A	SNP	LAD1	ENST00000367313	human	ensembl	69_37n	-1	known	missense	c.1312	p.R438W	0.004	pirsf_Ladinin_1	pirsf_Ladinin_1	-	no_errors	LAD1	HGNC	ENSG00000159166	21	0	0	28	8	22.22	-	-	-	A	201352318	G	A	201352318	3	1	814	1	0	0	0	0	1	0	0	0	8653	1057	37	1	299	1	LAD1	1	201352318	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	26425292	201352318	47898303	4	68612										
PPFIA4	0	genome.wustl.edu	37	chr1	203025561	203025563	+	In_Frame_Del	DEL	CTC	CTC	-													0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	caccataaaatgtgagacttCtcctccttcctcacccagga							TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	203025561	203025563	CTC	-	DEL	PPFIA4	ENST00000367240	human	ensembl	69_37n	1	known	in_frame_del	c.2102_2104	p.P703in_frame_del	1.000:0.996:1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_Prefoldin,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847	43	0	0	33	6	15.38	-	-	-	-	203025563	CTC	-	203025561	7	5	814	1	0	1	0	1	0	0	0	0	12385	913	32	0	665	0	PPFIA4	1	203025561	In_Frame_Del	DEL	CTC	TCGA-E2-A1LE-01A-12D-A19Y-09	1673243	203025561	46225060	5	68613										
SUSD4	0	genome.wustl.edu	37	chr1	223441874	223441874	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gggcagattattccacgttcCatcatcgcgacataatgaaa	8	10	1	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	223441874	223441874	C	A	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	nonsense	c.505	p.G169*	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	35	0	0	18	8	30.77	-	-	-	A	223441874	C	A	223441874	4	1	814	1	0	0	0	0	0	1	0	0	15501	603	21	4	1144	4	SUSD4	1	223441874	Nonsense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	20416313	223441874	25808747	6	68614										
OBSCN	0	genome.wustl.edu	37	chr1	228511202	228511202	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aagaccaacagggtggccatCagctcatcatcacagccgtg	10	13	4	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	1	228511202	228511202	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	nonsense	c.15547	p.Q5183*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	43	0	0	27	6	18.18	-	-	-	T	228511202	C	T	228511202	4	4	814	1	0	0	0	0	0	1	0	0	10885	827	29	2	15765	2	OBSCN	1	228511202	Nonsense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	5069328	228511202	20739419	7	68615										
FSHR	0	genome.wustl.edu	37	chr2	49191057	49191057	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ctagcctgagtcatataatcAacttcttgccttaaaataga	5	9	3	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	49191057	49191057	A	C	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	silent	c.903	p.V301	0.226	pfam_GnHR_TM	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	39	0	0	17	14	45.16	-	-	-	C	49191057	A	C	49191057	2	2	814	1	0	0	0	0	0	0	0	1	6122	117	5	5		5	FSHR	2	49191057	Silent	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09		49191057	194008316	8	68616										
ARHGAP25	0	genome.wustl.edu	37	chr2	69002532	69002532	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agctctactactacaaggatGaagaggacacgaagccccag	10	11	1	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	69002532	69002532	G	A	SNP	ARHGAP25	ENST00000409202	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	0.996	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	44	0	0	42	8	16	-	-	-	A	69002532	G	A	69002532	3	1	814	1	0	0	0	0	1	0	0	0	876	1291	45	2	287	2	ARHGAP25	2	69002532	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	19811475	69002532	174196841	9	68617										
ALMS1	0	genome.wustl.edu	37	chr2	73679504	73679504	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agagagaagcccagtgttatCtctcaacaggagttgccaga	11	9	2	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	73679504	73679504	C	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.5847	p.I1949M	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	39	0	0	15	21	58.33	-	-	-	G	73679504	C	G	73679504	3	3	814	1	0	0	0	0	1	0	0	0	535	903	32	2	5877	2	ALMS1	2	73679504	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	4676972	73679504	169519869	10	68618										
LCT	0	genome.wustl.edu	37	chr2	136594164	136594164	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tgggcatcactgagggtctgGagttgtgacgctcttgattc	14	8	3	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	136594164	136594164	G	A	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	silent	c.576	p.L192	0.069	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	76	0	0	77	11	12.5	-	-	-	A	136594164	G	A	136594164	2	1	814	1	0	0	0	0	0	0	0	1	8747	1161	41	2		2	LCT	2	136594164	Silent	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	62914660	136594164	106605209	11	68619										
ITGB6	0	genome.wustl.edu	37	chr2	161030528	161030528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ttgcatcaaatccaccttcgGgtgtgtcaatattagcagaa	8	9	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	161030528	161030528	G	T	SNP	ITGB6	ENST00000283249	human	ensembl	69_37n	-1	known	missense	c.716	p.P239H	0.998	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	48	0	0	45	19	29.69	-	-	-	T	161030528	G	T	161030528	3	4	814	1	0	0	0	0	1	0	0	0	7953	1232	43	4	1694	4	ITGB6	2	161030528	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	24436364	161030528	82168845	12	68620										
ORMDL1	0	genome.wustl.edu	37	chr2	190636411	190636411	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cttctcatttcacattatcaCagaaacagtgcagtttacta	4	10	3	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	190636411	190636411	C	G	SNP	ORMDL1	ENST00000496543	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.539	-	-	-	no_errors	ORMDL1	HGNC	ENSG00000128699	28	0	0	27	4	12.9	-	-	-	G	190636411	C	G	190636411	1	3	814	0	1	0	0	0	0	0	0	0	11342	493	17	4		4	ORMDL1	2	190636411	RNA	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	29605883	190636411	52562962	13	68621										
UGT1A10	0	genome.wustl.edu	37	chr2	234545372	234545372	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtgagttggcaactggaaagAtcactgaattgcacagtgaa	12	6	1	4			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	234545372	234545372	A	G	SNP	UGT1A10	ENST00000344644	human	ensembl	69_37n	1	known	silent	c.204	p.R68	0.006	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A10	HGNC	ENSG00000242515	89	0	0	58	15	20.55	-	-	-	G	234545372	A	G	234545372	2	3	814	1	0	0	0	0	0	0	0	1	17042	330	12	5		5	UGT1A10	2	234545372	Silent	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	43908961	234545372	8654001	14	68622										
LRRFIP1	0	genome.wustl.edu	37	chr2	238643965	238643965	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cccgacggggcagcacctccGgctcccgtgctgtaaggcgc	14	17	0	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	2	238643965	238643965	G	C	SNP	LRRFIP1	ENST00000308482	human	ensembl	69_37n	1	putative	missense	c.544	p.G182R	0.002	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	30	0	0	22	8	26.67	-	-	-	C	238643965	G	C	238643965	3	2	814	1	0	0	0	0	1	0	0	0	9093	1116	39	3	652	3	LRRFIP1	2	238643965	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	4098593	238643965	4555408	15	68623										
SCN11A	0	genome.wustl.edu	37	chr3	38889033	38889033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	catacccagaatggcatagaTaaacataatcagaaagagta	7	7	1	4			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	3	38889033	38889033	T	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.4528	p.I1510V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	32	0	0	14	5	26.32	-	-	-	C	38889033	T	C	38889033	3	2	814	1	0	0	0	0	1	0	0	0	14001	1406	49	5	851	5	SCN11A	3	38889033	Missense_Mutation	SNP	T	TCGA-E2-A1LE-01A-12D-A19Y-09		38889033	159133397	16	68624										
CCBP2	0	genome.wustl.edu	37	chr3	42906330	42906330	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtggcctggcattgggtcttCgggagtttcttgtgcaagat	15	7	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	3	42906330	42906330	C	A	SNP	CCBP2	ENST00000273145	human	ensembl	69_37n	1	known	missense	c.336	p.F112L	0.821	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_rcpt,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCBP2	HGNC	ENSG00000144648	61	0	0	29	14	31.82	-	-	-	A	42906330	C	A	42906330	3	1	814	1	0	0	0	0	1	0	0	0	2759	883	31	3	338	3	CCBP2	3	42906330	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	4017297	42906330	155116100	17	68625										
PDZRN3	0	genome.wustl.edu	37	chr3	73523654	73523654	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tgtattagagtaaatttactGaacaataagatcatcctctt	5	6	2	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	3	73523654	73523654	G	A	SNP	PDZRN3	ENST00000535920	human	ensembl	69_37n	-1	known	silent	c.36	p.F12	0.015	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZRN3	HGNC	ENSG00000121440	22	0	0	8	6	42.86	-	-	-	A	73523654	G	A	73523654	2	1	814	1	0	0	0	0	0	0	0	1	11782	1305	45	2		2	PDZRN3	3	73523654	Silent	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	30617324	73523654	124498776	18	68626										
KPNA1	0	genome.wustl.edu	37	chr3	122146502	122146503	+	Frame_Shift_Ins	INS	-	-	TA													0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agggcaacctgtacaatcttINSagagtccatgaccgtgagga							TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	3	122146502	122146503	-	TA	INS	KPNA1	ENST00000344337	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1312_1311	p.K437fs	1.000:1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA1	HGNC	ENSG00000114030	30	0	0	24	9	27.27	-	-	-	TA	122146503	-	TA	122146502	7	5	814	1	0	1	1	0	0	0	0	0	8482	1763	61	0	312	0	KPNA1	3	122146502	Frame_Shift_Ins	INS	-	TCGA-E2-A1LE-01A-12D-A19Y-09	48622848	122146502	75875928	19	68627										
FAT4	0	genome.wustl.edu	37	chr4	126237642	126237642	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tatcagtatctcagctccttCgagtgttttggctactgtca	8	10	3	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	4	126237642	126237642	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	nonsense	c.76	p.R26*	0.007	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	43	0	0	49	11	18.33	-	-	-	T	126237642	C	T	126237642	4	4	814	1	0	0	0	0	0	1	0	0	5738	876	31	1	78	1	FAT4	4	126237642	Nonsense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		126237642	64916634	20	68628										
PCDH18	0	genome.wustl.edu	37	chr4	138451312	138451312	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ctgtgtagggaacagaatccAtgctaacgttggtatggatg	13	6	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	4	138451312	138451312	A	T	SNP	PCDH18	ENST00000344876	human	ensembl	69_37n	-1	known	missense	c.1931	p.M644K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184	43	0	0	44	11	20	-	-	-	T	138451312	A	T	138451312	3	4	814	1	0	0	0	0	1	0	0	0	11586	217	8	5	1492	5	PCDH18	4	138451312	Missense_Mutation	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	12213670	138451312	52702964	21	68629										
NPY1R	0	genome.wustl.edu	37	chr4	164246691	164246691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agtggatatcattgctgtgaGgtggcagagcaggaataaca	14	5	1	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	4	164246691	164246691	G	T	SNP	NPY1R	ENST00000296533	human	ensembl	69_37n	-1	known	missense	c.919	p.L307I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_supfam,prints_NPY1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	25	0	0	32	5	13.51	-	-	-	T	164246691	G	T	164246691	3	4	814	1	0	0	0	0	1	0	0	0	10681	1000	35	4	239	4	NPY1R	4	164246691	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	25795379	164246691	26907585	22	68630										
SLC38A9	0	genome.wustl.edu	37	chr5	55008321	55008321	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ccgaggcttcaggaggctggGcagccggcgcgcccaggtgg	19	13	1	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	5	55008321	55008321	G	C	SNP	SLC38A9	ENST00000504880	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC38A9	HGNC	ENSG00000177058	26	0	0	19	5	20	-	-	-	C	55008321	G	C	55008321	1	2	814	0	1	0	0	0	0	0	0	0	14700	1218	42	4		4	SLC38A9	5	55008321	RNA	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		55008321	125906939	23	68631										
PCDHB7	0	genome.wustl.edu	37	chr5	140553979	140553979	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gccctcaggtccctggactaCgaggccctgcaggcgttcga	13	15	1	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	5	140553979	140553979	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	silent	c.1563	p.Y521	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	107	0	0	93	33	26.19	-	-	-	T	140553979	C	T	140553979	2	4	814	1	0	0	0	0	0	0	0	1	11620	547	19	1		1	PCDHB7	5	140553979	Silent	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	85545658	140553979	40361281	24	68632										
PCDHB13	0	genome.wustl.edu	37	chr5	140594884	140594884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tacccttcctcctgaaatccGcggaaaacttttacacccta	4	15	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	5	140594884	140594884	G	A	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	missense	c.1189	p.A397T	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	53	0	0	32	11	25.58	-	-	-	A	140594884	G	A	140594884	3	1	814	1	0	0	0	0	1	0	0	0	11611	1087	38	1	1191	1	PCDHB13	5	140594884	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	40905	140594884	40320376	25	68633										
GFPT2	0	genome.wustl.edu	37	chr5	179731847	179731847	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ttcataatgaccatgatgacGggcatctgcttgtcaatcag	9	9	4	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	5	179731847	179731847	G	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	silent	c.1767	p.P589	0.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	39	0	0	23	17	42.5	-	-	-	T	179731847	G	T	179731847	2	4	814	1	0	0	0	0	0	0	0	1	6398	1103	39	3		3	GFPT2	5	179731847	Silent	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	39136963	179731847	1183413	26	68634										
TFAP2B	0	genome.wustl.edu	37	chr6	50805705	50805705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cagagccaaatcgaaaaatgGggggagatctttgcgagaaa	13	6	1	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	6	50805705	50805705	G	A	SNP	TFAP2B	ENST00000263046	human	ensembl	69_37n	1	known	missense	c.866	p.G289E	1.000	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196	28	0	0	31	6	16.22	-	-	-	A	50805705	G	A	50805705	3	1	814	1	0	0	0	0	1	0	0	0	15883	1232	43	4	857	4	TFAP2B	6	50805705	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		50805705	120309362	27	68635										
EEF1A1	0	genome.wustl.edu	37	chr6	74227973	74227973	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gcgcttatttggcctggatgGttcaggataatcaccttgga	12	8	2	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	6	74227973	74227973	G	T	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.1044	p.N348K	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	65	0	0	38	6	13.64	-	-	-	T	74227973	G	T	74227973	3	4	814	1	0	0	0	0	1	0	0	0	4958	1252	44	4	352	4	EEF1A1	6	74227973	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	23422268	74227973	96887094	28	68636										
SYNJ2	0	genome.wustl.edu	37	chr6	158480367	158480367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agcagaggcggagaggaggtGctcaacagagccttcaaggt	16	8	2	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	6	158480367	158480367	G	T	SNP	SYNJ2	ENST00000485863	human	ensembl	69_37n	1	known	missense	c.416	p.C139F	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYNJ2	HGNC	ENSG00000078269	23	0	0	17	4	19.05	-	-	-	T	158480367	G	T	158480367	3	4	814	1	0	0	0	0	1	0	0	0	15545	1306	46	4	962	4	SYNJ2	6	158480367	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	84252394	158480367	12634700	29	68637										
MEOX2	0	genome.wustl.edu	37	chr7	15725586	15725586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cagtgcctggcggccgtagtCccccggcgcgcacgcggccc	15	19	0	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	7	15725586	15725586	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	69_37n	-1	known	missense	c.442	p.D148N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	37	0	0	55	12	17.91	-	-	-	T	15725586	C	T	15725586	3	4	814	1	0	0	0	0	1	0	0	0	9545	855	30	2	484	2	MEOX2	7	15725586	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		15725586	143413077	30	68638										
CLIP2	0	genome.wustl.edu	37	chr7	73753226	73753226	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtcatccccctgcgggagagCgtcctcaacagctccgtgaa	11	15	2	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	7	73753226	73753226	C	T	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	silent	c.570	p.S190	0.994	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	46	0	0	36	16	30.77	-	-	-	T	73753226	C	T	73753226	2	4	814	1	0	0	0	0	0	0	0	1	3563	767	27	1		1	CLIP2	7	73753226	Silent	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	58027640	73753226	85385437	31	68639										
EXOC4	0	genome.wustl.edu	37	chr7	133059629	133059629	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtttgacaagtttaatgctgTagccgctgcacactctgtgg	11	9	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	7	133059629	133059629	T	A	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	1	known	missense	c.1055	p.V352E	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	29	0	0	17	15	46.88	-	-	-	A	133059629	T	A	133059629	3	1	814	1	0	0	0	0	1	0	0	0	5342	1638	57	5	1081	5	EXOC4	7	133059629	Missense_Mutation	SNP	T	TCGA-E2-A1LE-01A-12D-A19Y-09	59306403	133059629	26079034	32	68640										
NOS3	0	genome.wustl.edu	37	chr7	150706014	150706014	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agccctcaccggcctgtcccGcaggccgcctgtgagacctt	11	18	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	7	150706014	150706014	G	T	SNP	NOS3	ENST00000473057	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.640	-	-	-	no_errors	NOS3	HGNC	ENSG00000164867	40	0	0	30	8	21.05	-	-	-	T	150706014	G	T	150706014	1	4	814	0	1	0	0	0	0	0	0	0	10616	1102	38	3		3	NOS3	7	150706014	RNA	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	17646385	150706014	8432649	33	68641										
ZFAT	0	genome.wustl.edu	37	chr8	135612755	135612755	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agtcacagccatcggtgggaCacttcagcaagatgttactg	11	10	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	8	135612755	135612755	C	A	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	missense	c.2399	p.C800F	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	35	0	0	40	6	13.04	-	-	-	A	135612755	C	A	135612755	3	1	814	1	0	0	0	0	1	0	0	0	17728	478	17	4	1372	4	ZFAT	8	135612755	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		135612755	10751267	34	68642										
FLJ43860	0	genome.wustl.edu	37	chr8	142458028	142458028	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tttgggggctgggcacggccGcctcctgggcctgctgcttg	17	13	0	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	8	142458028	142458028	G	C	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.2798	p.A933G	0.000	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	52	0	0	79	17	17.71	-	-	-	C	142458028	G	C	142458028	3	2	814	1	0	0	0	0	1	0	0	0	5976	1087	38	3	1198	3	FLJ43860	8	142458028	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	6845273	142458028	3905994	35	68643										
ABO	0	genome.wustl.edu	37	chr9	136131308	136131308	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	acctcttgcaccgaccccccGaagaacccccccaggtagta	7	19	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	9	136131308	136131308	G	A	SNP	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	48	0	0	55	10	15.38	-	-	-	A	136131308	G	A	136131308	1	1	814	0	1	0	0	0	0	0	0	0	97	1049	37	1		1	ABO	9	136131308	RNA	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		136131308	5082123	36	68644										
LCN8	0	genome.wustl.edu	37	chr9	139650606	139650606	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aacagcatgtggaacagcgcAgggaacagcatgaggaacag	14	8	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	9	139650606	139650606	A	G	SNP	LCN8	ENST00000482893	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	LCN8	HGNC	ENSG00000204001	22	0	0	33	10	23.26	-	-	-	G	139650606	A	G	139650606	1	3	814	0	1	0	0	0	0	0	0	0	8740	203	7	5		5	LCN8	9	139650606	RNA	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	3519298	139650606	1562825	37	68645										
CUBN	0	genome.wustl.edu	37	chr10	16882890	16882890	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ttctatttactcactgtccaTgatggtgtatgtagcattaa	7	7	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	10	16882890	16882890	T	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.9820	p.M3274V	0.016	superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	113	0	0	55	22	28.57	-	-	-	C	16882890	T	C	16882890	3	2	814	1	0	0	0	0	1	0	0	0	4082	1464	51	5	1079	5	CUBN	10	16882890	Missense_Mutation	SNP	T	TCGA-E2-A1LE-01A-12D-A19Y-09		16882890	118651857	38	68646										
AGAP7	0	genome.wustl.edu	37	chr10	51465571	51465571	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tacttcatataatcacctaaGcttgaataataggtgagcac	6	8	2	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	10	51465571	51465571	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	69_37n	-1	known	silent	c.885	p.S295	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169	135	0	0	116	26	18.31	-	-	-	A	51465571	G	A	51465571	2	1	814	1	0	0	0	0	0	0	0	1	373	962	34	4		4	AGAP7	10	51465571	Silent	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	34582681	51465571	84069176	39	68647										
PSD	0	genome.wustl.edu	37	chr10	104174725	104174725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tgccgaggctgggatgagggCcagggagtgggccgggccgt	22	9	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	10	104174725	104174725	C	A	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	missense	c.1019	p.G340V	0.012	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	55	0	0	37	20	35.09	-	-	-	A	104174725	C	A	104174725	3	1	814	1	0	0	0	0	1	0	0	0	12726	739	26	4	2111	4	PSD	10	104174725	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	52709154	104174725	31360022	40	68648										
AMPD3	0	genome.wustl.edu	37	chr11	10500163	10500163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ggccccccggcagccagtccGgccatgtctcccacaacccc	9	22	1	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	11	10500163	10500163	G	A	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	silent	c.312	p.P104	0.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	41	0	0	28	10	26.32	-	-	-	A	10500163	G	A	10500163	2	1	814	1	0	0	0	0	0	0	0	1	587	1103	39	1		1	AMPD3	11	10500163	Silent	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		10500163	124506353	41	68649										
FAT3	0	genome.wustl.edu	37	chr11	92532481	92532481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agtggatgcggaacccgggaCtctgatttatcaggtgacag	14	8	2	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	11	92532481	92532481	C	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.6302	p.T2101N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	44	0	0	26	9	25.71	-	-	-	A	92532481	C	A	92532481	3	1	814	1	0	0	0	0	1	0	0	0	5737	565	20	4	6336	4	FAT3	11	92532481	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	82032318	92532481	42474035	42	68650										
FAT3	0	genome.wustl.edu	37	chr11	92532610	92532610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gaatgttattttaaaggaagCattcaactctgacttgtcca	7	7	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	11	92532610	92532610	C	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.6431	p.A2144V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	39	0	0	21	5	19.23	-	-	-	T	92532610	C	T	92532610	3	4	814	1	0	0	0	0	1	0	0	0	5737	710	25	4	6465	4	FAT3	11	92532610	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	129	92532610	42473906	43	68651										
KCNA5	0	genome.wustl.edu	37	chr12	5154013	5154013	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tgccccgcaacgagttccagCgccaggtgtggcttatcttc	11	14	1	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	12	5154013	5154013	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.700	p.R234C	0.910	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	76	0	0	54	20	27.03	-	-	-	T	5154013	C	T	5154013	3	4	814	1	0	0	0	0	1	0	0	0	8060	768	27	1	702	1	KCNA5	12	5154013	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		5154013	128697882	44	68652										
ACRBP	0	genome.wustl.edu	37	chr12	6756501	6756501	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	acctctcacccttcaggagtGagggaaggaagccagcggct	13	12	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	12	6756501	6756501	G	T	SNP	ACRBP	ENST00000229243	human	ensembl	69_37n	-1	known	nonsense	c.32	p.S11*	0.023	pfam_Proacrosin-bd	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644	46	0	0	23	13	36.11	-	-	-	T	6756501	G	T	6756501	4	4	814	1	0	0	0	0	0	1	0	0	170	1294	45	2	1639	2	ACRBP	12	6756501	Nonsense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	1602488	6756501	127095394	45	68653										
TRPC4	0	genome.wustl.edu	37	chr13	38320328	38320328	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aaaggctgtgagaaaaggatCttcgcttgacagtgcaatga	12	6	1	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	13	38320328	38320328	C	G	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.643	p.D215H	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	57	0	0	44	11	20	-	-	-	G	38320328	C	G	38320328	3	3	814	1	0	0	0	0	1	0	0	0	16676	913	32	2	2341	2	TRPC4	13	38320328	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		38320328	76849550	46	68654										
SLC25A30	0	genome.wustl.edu	37	chr13	45971461	45971461	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	atagagagcaaaaaacccttCattcttccatgtctgttaaa	5	9	3	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	13	45971461	45971461	C	T	SNP	SLC25A30	ENST00000519676	human	ensembl	69_37n	-1	known	missense	c.766	p.E256K	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A30	HGNC	ENSG00000174032	33	0	0	12	10	45.45	-	-	-	T	45971461	C	T	45971461	3	4	814	1	0	0	0	0	1	0	0	0	14583	835	29	2	117	2	SLC25A30	13	45971461	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	7651133	45971461	69198417	47	68655										
FBXL3	0	genome.wustl.edu	37	chr13	77581590	77581590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tagggcatgtcattcccacaCggccaagcacatctttgctt	8	13	2	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	13	77581590	77581590	C	T	SNP	FBXL3	ENST00000355619	human	ensembl	69_37n	-1	known	missense	c.977	p.R326H	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like	-	no_errors	FBXL3	HGNC	ENSG00000005812	30	0	0	12	14	53.85	-	-	-	T	77581590	C	T	77581590	3	4	814	1	0	0	0	0	1	0	0	0	5766	536	19	1	313	1	FBXL3	13	77581590	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	31610129	77581590	37588288	48	68656										
NDN	0	genome.wustl.edu	37	chr15	23931600	23931600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	caaaagaactcgtattcgggCggctccacgtatgggacgcg	13	11	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	15	23931600	23931600	C	T	SNP	NDN	ENST00000331837	human	ensembl	69_37n	-1	known	silent	c.765	p.P255	0.018	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	60	0	0	53	12	18.46	-	-	-	T	23931600	C	T	23931600	2	4	814	1	0	0	0	0	0	0	0	1	10319	755	27	1		1	NDN	15	23931600	Silent	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		23931600	78599792	49	68657										
SHC4	0	genome.wustl.edu	37	chr15	49255010	49255010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gcaaggtggcatcttcagtcGgcaggtgaggtgccagggcg	18	9	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	15	49255010	49255010	G	A	SNP	SHC4	ENST00000332408	human	ensembl	69_37n	-1	known	missense	c.203	p.P68L	0.971	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,prints_PID_domain,prints_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	33	0	0	40	11	21.57	-	-	-	A	49255010	G	A	49255010	3	1	814	1	0	0	0	0	1	0	0	0	14362	1116	39	1	1737	1	SHC4	15	49255010	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	25323410	49255010	53276382	50	68658										
UNC13C	0	genome.wustl.edu	37	chr15	54306089	54306089	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tttaaatgtgactgaagaaaGatttgaatatgttgaaagcg	10	2	0	6			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	15	54306089	54306089	G	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.989	p.R330I	0.990	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	91	0	0	59	13	18.06	-	-	-	T	54306089	G	T	54306089	3	4	814	1	0	0	0	0	1	0	0	0	17083	942	33	2	991	2	UNC13C	15	54306089	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	5051079	54306089	48225303	51	68659										
IGDCC4	0	genome.wustl.edu	37	chr15	65674097	65674097	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ataccctgtaaaaggccaatAgattcttttctaataaaaat	4	7	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	15	65674097	65674097	A	G	SNP	IGDCC4	ENST00000558048	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.887	-	-	-	no_errors	IGDCC4	HGNC	ENSG00000103742	14	0	0	12	5	29.41	-	-	-	G	65674097	A	G	65674097	1	3	814	0	1	0	0	0	0	0	0	0	7623	435	15	5		5	IGDCC4	15	65674097	RNA	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	11368008	65674097	36857295	52	68660										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84651682	84651682	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ccagtttgatgagctgataaGaaacatgagtcagctcatgg	11	7	2	5			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	15	84651682	84651682	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.3302	p.R1101K	0.228	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	23	0	0	9	10	52.63	-	-	-	A	84651682	G	A	84651682	3	1	814	1	0	0	0	0	1	0	0	0	276	942	33	2	3380	2	ADAMTSL3	15	84651682	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	18977585	84651682	17879710	53	68661										
MAPK8IP3	0	genome.wustl.edu	37	chr16	1816295	1816295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aggccacagaggccacggagGtgccagaccctgggcccagc	15	15	0	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	16	1816295	1816295	G	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	1	known	missense	c.2701	p.V901L	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	16	0	0	15	6	28.57	-	-	-	T	1816295	G	T	1816295	3	4	814	1	0	0	0	0	1	0	0	0	9357	1261	44	4	2803	4	MAPK8IP3	16	1816295	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		1816295	88538458	54	68662										
SEC14L5	0	genome.wustl.edu	37	chr16	5061184	5061184	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cgtggcctgcagcctcccggGtgtggacgatgtcctgacgg	16	13	0	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	16	5061184	5061184	G	C	SNP	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	missense	c.1889	p.G630A	0.995	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	77	0	0	55	19	25.68	-	-	-	C	5061184	G	C	5061184	3	2	814	1	0	0	0	0	1	0	0	0	14073	1261	44	4	1943	4	SEC14L5	16	5061184	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	3244889	5061184	85293569	55	68663										
COG7	0	genome.wustl.edu	37	chr16	23464305	23464305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agtcgtctgccaggaacttgGagaagtccatggcggaactg	14	9	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	16	23464305	23464305	G	A	SNP	COG7	ENST00000307149	human	ensembl	69_37n	-1	known	missense	c.11	p.S4F	1.000	pfam_COG_su7	pfam_COG_su7	-	no_errors	COG7	HGNC	ENSG00000168434	37	0	0	17	10	37.04	-	-	-	A	23464305	G	A	23464305	3	1	814	1	0	0	0	0	1	0	0	0	3693	1174	41	2	2369	2	COG7	16	23464305	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	18403121	23464305	66890448	56	68664										
MNT	0	genome.wustl.edu	37	chr17	2290427	2290427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gcgggtacaagggcagctggGagcccaggtgggccacatgg	19	10	0	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	17	2290427	2290427	G	A	SNP	MNT	ENST00000174618	human	ensembl	69_37n	-1	known	missense	c.1517	p.S506F	0.995	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MNT	HGNC	ENSG00000070444	96	0	0	47	38	44.71	-	-	-	A	2290427	G	A	2290427	3	1	814	1	0	0	0	0	1	0	0	0	9750	1174	41	2	235	2	MNT	17	2290427	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		2290427	78904783	57	68665										
TP53	0	genome.wustl.edu	37	chr17	7578440	7578440	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cgtcatgtgctgtgactgctTgtagatggccatggcgcgga	15	9	1	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	17	7578440	7578440	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.490	p.K164E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	25	0	0	12	5	27.78	-	-	-	C	7578440	T	C	7578440	3	2	814	1	0	0	0	0	1	0	0	0	16477	1821	63	5	808	5	TP53	17	7578440	Missense_Mutation	SNP	T	TCGA-E2-A1LE-01A-12D-A19Y-09	5288013	7578440	73616770	58	68666										
ITGB3	0	genome.wustl.edu	37	chr17	45387552	45387553	+	Frame_Shift_Ins	INS	-	-	ACGT													0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	cgtctaccttcaccaatatcINSacgtaccggggcacttaatg							TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	17	45387552	45387553	-	ACGT	INS	ITGB3	ENST00000262017	human	ensembl	69_37n	1	known	frame_shift_ins	c.2349_2350	p.R785fs	1.000:1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_cyt	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	46	0	0	28	8	22.22	-	-	-	ACGT	45387553	-	ACGT	45387552	7	5	814	1	0	1	1	0	0	0	0	0	7949	816	29	0	2407	0	ITGB3	17	45387552	Frame_Shift_Ins	INS	-	TCGA-E2-A1LE-01A-12D-A19Y-09	37809112	45387552	35807658	59	68667										
PPM1D	0	genome.wustl.edu	37	chr17	58740764	58740764	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	atagacgaaatggcttaagtCgaagtagtggtgctcagcct	12	7	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	17	58740764	58740764	C	A	SNP	PPM1D	ENST00000305921	human	ensembl	69_37n	1	known	silent	c.1669	p.R557	0.816	NULL	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1D	HGNC	ENSG00000170836	21	0	0	13	6	31.58	-	-	-	A	58740764	C	A	58740764	2	1	814	1	0	0	0	0	0	0	0	1	12414	876	31	3		3	PPM1D	17	58740764	Silent	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	13353212	58740764	22454446	60	68668										
SYT4	0	genome.wustl.edu	37	chr18	40854127	40854127	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	agatccagatgcaatgaattCtttggcacagctggcttatt	9	8	1	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	18	40854127	40854127	C	A	SNP	SYT4	ENST00000255224	human	ensembl	69_37n	-1	known	missense	c.267	p.K89N	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872	74	0	0	37	15	28.85	-	-	-	A	40854127	C	A	40854127	3	1	814	1	0	0	0	0	1	0	0	0	15568	912	32	2	1022	2	SYT4	18	40854127	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		40854127	37223121	61	68669										
C18orf54	0	genome.wustl.edu	37	chr18	51889270	51889270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	acttgaagcagacagatcatGggaaaatattcctgttactt	8	7	1	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	18	51889270	51889270	G	T	SNP	C18orf54	ENST00000300091	human	ensembl	69_37n	1	known	missense	c.719	p.W240L	1.000	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845	40	0	0	23	4	14.81	-	-	-	T	51889270	G	T	51889270	3	4	814	1	0	0	0	0	1	0	0	0	1921	1357	47	4	729	4	C18orf54	18	51889270	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	11035143	51889270	26187978	62	68670										
MAST3	0	genome.wustl.edu	37	chr19	18257727	18257727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ccctgcggaccacagccctgGagaacacctccatcaaggtg	10	16	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	19	18257727	18257727	G	A	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	missense	c.3112	p.E1038K	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	32	0	0	23	21	47.73	-	-	-	A	18257727	G	A	18257727	3	1	814	1	0	0	0	0	1	0	0	0	9397	1175	41	2	3210	2	MAST3	19	18257727	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		18257727	40871256	63	68671										
CRTC1	0	genome.wustl.edu	37	chr19	18888034	18888034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aactgaccagctctctggccGgggtcggcgacgtcagcttc	13	14	2	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	19	18888034	18888034	G	A	SNP	CRTC1	ENST00000338797	human	ensembl	69_37n	1	known	missense	c.1795	p.G599R	1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662	34	0	0	47	6	11.11	-	-	-	A	18888034	G	A	18888034	3	1	814	1	0	0	0	0	1	0	0	0	3929	1116	39	1	1853	1	CRTC1	19	18888034	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	630307	18888034	40240949	64	68672										
ZNF677	0	genome.wustl.edu	37	chr19	53741153	53741153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tctgatgattagtgaggttcGaacttttgctaaaagccttt	9	6	1	3			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	19	53741153	53741153	G	A	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	missense	c.827	p.S276L	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	52	0	0	34	13	27.66	-	-	-	A	53741153	G	A	53741153	3	1	814	1	0	0	0	0	1	0	0	0	18180	1059	37	1	931	1	ZNF677	19	53741153	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09	34853119	53741153	5387830	65	68673										
ANKRD5	0	genome.wustl.edu	37	chr20	10025082	10025082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	aatggaagcgtcaagagaagGggtagtggaaatagttcgag	16	3	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	20	10025082	10025082	G	A	SNP	ANKRD5	ENST00000378380	human	ensembl	69_37n	1	known	missense	c.587	p.G196E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_HAND_2,prints_Ankyrin_rpt	-	no_errors	ANKRD5	HGNC	ENSG00000132623	34	0	0	28	13	30.23	-	-	-	A	10025082	G	A	10025082	3	1	814	1	0	0	0	0	1	0	0	0	675	1232	43	4	597	4	ANKRD5	20	10025082	Missense_Mutation	SNP	G	TCGA-E2-A1LE-01A-12D-A19Y-09		10025082	53000438	66	68674										
C20orf166	0	genome.wustl.edu	37	chr20	61167855	61167855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	gtccgtgcagctgggaacgcCtcctctgctatggctggagc	14	13	1	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	20	61167855	61167855	C	G	SNP	C20orf166	ENST00000370527	human	ensembl	69_37n	1	known	missense	c.325	p.L109V	0.000	NULL	NULL	-	no_errors	C20orf166	HGNC	ENSG00000174407	39	0	0	20	6	23.08	-	-	-	G	61167855	C	G	61167855	3	3	814	1	0	0	0	0	1	0	0	0	2115	681	24	4	335	4	C20orf166	20	61167855	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09	51142773	61167855	1857665	67	68675										
TCEA2	0	genome.wustl.edu	37	chr20	62703271	62703271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	tgaccacctttgttgtctgcAacgagtgtggaaaccgctgg	12	10	1	1			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	20	62703271	62703271	A	T	SNP	TCEA2	ENST00000343484	human	ensembl	69_37n	1	known	missense	c.868	p.N290Y	1.000	pfam_Znf_TFIIS,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_TFIIS_N,pfam_Znf_TFIIS,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA2	HGNC	ENSG00000171703	65	0	0	32	17	34.69	-	-	-	T	62703271	A	T	62703271	3	4	814	1	0	0	0	0	1	0	0	0	15763	130	5	5	902	5	TCEA2	20	62703271	Missense_Mutation	SNP	A	TCGA-E2-A1LE-01A-12D-A19Y-09	1535416	62703271	322249	68	68676										
MB	0	genome.wustl.edu	37	chr22	36007099	36007099	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	ttcatctcgtcctctgacttCaggtgcttgaacttgtcaaa	7	11	5	2			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	22	36007099	36007099	C	T	SNP	MB	ENST00000359787	human	ensembl	69_37n	-1	known	silent	c.150	p.L50	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,prints_Myoglobin,pfscan_Globin	-	no_errors	MB	HGNC	ENSG00000198125	57	0	0	25	11	30.56	-	-	-	T	36007099	C	T	36007099	2	4	814	1	0	0	0	0	0	0	0	1	9412	813	29	2		2	MB	22	36007099	Silent	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		36007099	15297467	69	68677										
BCOR	0	genome.wustl.edu	37	chrX	39933225	39933225	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	10	0.136961174506649	1.85904116727462	2.82574257425743	1.51379066478076	0.688167990308251	1	0	accgtgggagccatctttttCatgtggtcagctttggaagc	12	9	3	0			TCGA-E2-A1LE-01A-12D-A19Y-09	TCGA-E2-A1LE-11A-23D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eac99b55-b6ca-40be-8bd5-8ac8bf066651	85a70007-4c24-4ac8-9f64-7d7502788851	X	39933225	39933225	C	G	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.1374	p.M458I	0.929	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	46	0	0	18	8	30.77	-	-	-	G	39933225	C	G	39933225	3	3	814	1	0	0	0	0	1	0	0	0	1390	826	29	2	3941	2	BCOR	23	39933225	Missense_Mutation	SNP	C	TCGA-E2-A1LE-01A-12D-A19Y-09		39933225	115337335	70	68678										
MIB2	0	genome.wustl.edu	37	chr1	1565047	1565047	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cgcaggatgaagaagtgcatCaggtgccaggtggtcgtcag	16	8	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	1565047	1565047	C	G	SNP	MIB2	ENST00000505820	human	ensembl	69_37n	1	known	missense	c.2937	p.I979M	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Mib_Herc2,pfam_Ankyrin_rpt,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB2	HGNC	ENSG00000197530	44	0	0	8	16	66.67	-	-	-	G	1565047	C	G	1565047	3	3	815	1	0	0	0	0	1	0	0	0	9638	827	29	2	3011	2	MIB2	1	1565047	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		1565047	247685574	1	68679										
PUM1	0	genome.wustl.edu	37	chr1	31478856	31478856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccaggtcttctctgcaccatGattggctgggaaactgaatg	11	10	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	31478856	31478856	G	A	SNP	PUM1	ENST00000525843	human	ensembl	69_37n	-1	putative	missense	c.613	p.H205Y	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PUM1	HGNC	ENSG00000134644	54	0	0	24	13	34.21	-	-	-	A	31478856	G	A	31478856	3	1	815	1	0	0	0	0	1	0	0	0	12908	1280	45	2	3074	2	PUM1	1	31478856	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	29913809	31478856	217771765	2	68680										
NDUFS5	0	genome.wustl.edu	37	chr1	39494490	39494490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agccctacaagatggctggtCgatgccatgcttttgaaaaa	10	9	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	39494490	39494490	C	G	SNP	NDUFS5	ENST00000372967	human	ensembl	69_37n	1	known	missense	c.94	p.R32G	0.948	pfam_NADH_UbQ_OxRdtase_FeS-su5,pfam_Cyt_c_biogenesis_Cmc1-like	pfam_NADH_UbQ_OxRdtase_FeS-su5,pfam_Cyt_c_biogenesis_Cmc1-like	-	no_errors	NDUFS5	HGNC	ENSG00000168653	84	0	0	45	5	10	-	-	-	G	39494490	C	G	39494490	3	3	815	1	0	0	0	0	1	0	0	0	10367	876	31	3	96	3	NDUFS5	1	39494490	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	8015634	39494490	209756131	3	68681										
ZMYND12	0	genome.wustl.edu	37	chr1	42914274	42914274	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttcccttcaaagaggtatttCtgggctatggtgtagcagaa	11	7	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	42914274	42914274	C	G	SNP	ZMYND12	ENST00000372565	human	ensembl	69_37n	-1	known	missense	c.288	p.Q96H	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185	81	0	0	42	20	31.75	-	-	-	G	42914274	C	G	42914274	3	3	815	1	0	0	0	0	1	0	0	0	17803	912	32	2	833	2	ZMYND12	1	42914274	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	3419784	42914274	206336347	4	68682										
VAV3	0	genome.wustl.edu	37	chr1	108299921	108299921	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagtttcagatttgccttctCagtcggatcagtggtatgtt	10	8	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	108299921	108299921	C	G	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	missense	c.1048	p.E350Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215	225	1	0.44	117	35	23.03	-	-	-	G	108299921	C	G	108299921	3	3	815	1	0	0	0	0	1	0	0	0	17230	835	29	2	1588	2	VAV3	1	108299921	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	65385647	108299921	140950700	5	68683										
FLG	0	genome.wustl.edu	37	chr1	152276492	152276492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtggtgggatccatgtctctCtcctgcacttgatcttgcct	10	12	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	152276492	152276492	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.10870	p.E3624K	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	521	0	0	478	81	14.49	-	-	-	T	152276492	C	T	152276492	3	4	815	1	0	0	0	0	1	0	0	0	5968	922	32	2	1319	2	FLG	1	152276492	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	43976571	152276492	96974129	6	68684										
NPR1	0	genome.wustl.edu	37	chr1	153661754	153661754	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttcagtgacattgtgggtttCacagcgctgtcggcggagag	15	8	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	153661754	153661754	C	T	SNP	NPR1	ENST00000368680	human	ensembl	69_37n	1	known	silent	c.2655	p.F885	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	111	0	0	71	17	19.1	-	-	-	T	153661754	C	T	153661754	2	4	815	1	0	0	0	0	0	0	0	1	10667	825	29	2		2	NPR1	1	153661754	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	1385262	153661754	95588867	7	68685										
SEC16B	0	genome.wustl.edu	37	chr1	177899016	177899016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcatggctgggtgggatagcGacgctgagctaggcgatttg	18	7	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	177899016	177899016	G	A	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	missense	c.3160	p.R1054C	1.000	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	134	0	0	130	41	23.98	-	-	-	A	177899016	G	A	177899016	3	1	815	1	0	0	0	0	1	0	0	0	14075	1058	37	1	26	1	SEC16B	1	177899016	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	24237262	177899016	71351605	8	68686										
ABL2	0	genome.wustl.edu	37	chr1	179086512	179086512	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ggtattgtaggcaagactctCtggtgctgtccacttaatag	11	8	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	179086512	179086512	C	G	SNP	ABL2	ENST00000502732	human	ensembl	69_37n	-1	known	missense	c.1363	p.E455Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	130	0	0	156	29	15.68	-	-	-	G	179086512	C	G	179086512	3	3	815	1	0	0	0	0	1	0	0	0	93	922	32	2	2250	2	ABL2	1	179086512	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	1187496	179086512	70164109	9	68687										
LAMC2	0	genome.wustl.edu	37	chr1	183187608	183187608	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctgcaagccagctgtcactgGagaacgctgtgataggtctg	13	10	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	183187608	183187608	G	C	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.488	p.G163A	1.000	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	39	0	0	32	8	20	-	-	-	C	183187608	G	C	183187608	3	2	815	1	0	0	0	0	1	0	0	0	8669	1174	41	2	502	2	LAMC2	1	183187608	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	4101096	183187608	66063013	10	68688										
SRGAP2	0	genome.wustl.edu	37	chr1	206579816	206579816	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tttgatgtgtctgactgcttCcagtacagcaactccatgga	9	10	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	206579816	206579816	C	G	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	1	known	missense	c.979	p.P327A	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	32	0	0	30	7	18.92	-	-	-	G	206579816	C	G	206579816	3	3	815	1	0	0	0	0	1	0	0	0	15237	854	30	2	1005	2	SRGAP2	1	206579816	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	23392208	206579816	42670805	11	68689										
JMJD4	0	genome.wustl.edu	37	chr1	227921783	227921783	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagcacgtgaggcacgaggaGactagggcagcacgagtggg	18	9	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	227921783	227921783	G	C	SNP	JMJD4	ENST00000465251	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JMJD4	HGNC	ENSG00000081692	55	0	0	43	11	20.37	-	-	-	C	227921783	G	C	227921783	1	2	815	0	1	0	0	0	0	0	0	0	8005	957	33	2		2	JMJD4	1	227921783	RNA	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	21341967	227921783	21328838	12	68690										
OR2T27	0	genome.wustl.edu	37	chr1	248813827	248813827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agatggctacgtagcgatcaTaggacatgagtcctaggagg	14	7	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	248813827	248813827	T	C	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.359	p.Y120C	0.954	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	105	0	0	47	12	20	-	-	-	C	248813827	T	C	248813827	3	2	815	1	0	0	0	0	1	0	0	0	11094	1406	49	5	597	5	OR2T27	1	248813827	Missense_Mutation	SNP	T	TCGA-E2-A1LG-01A-21D-A14K-09	20892044	248813827	436794	13	68691										
SH3BP5L	0	genome.wustl.edu	37	chr1	249106488	249106488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aatctgctcgctgatctgctCcaggttacgaagggccacgg	12	12	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	1	249106488	249106488	C	T	SNP	SH3BP5L	ENST00000366472	human	ensembl	69_37n	-1	known	missense	c.793	p.E265K	1.000	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137	58	0	0	40	6	13.04	-	-	-	T	249106488	C	T	249106488	3	4	815	1	0	0	0	0	1	0	0	0	14336	864	30	2	392	2	SH3BP5L	1	249106488	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	292661	249106488	144133	14	68692										
INPP4A	0	genome.wustl.edu	37	chr2	99189336	99189336	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctgctgcggtttctgggtcaGaacgtgcatgcccggaagaa	14	10	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	99189336	99189336	G	C	SNP	INPP4A	ENST00000074304	human	ensembl	69_37n	1	known	missense	c.2592	p.Q864H	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4A	HGNC	ENSG00000040933	107	0	0	60	17	22.08	-	-	-	C	99189336	G	C	99189336	3	2	815	1	0	0	0	0	1	0	0	0	7806	933	33	2	2678	2	INPP4A	2	99189336	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		99189336	144010037	15	68693										
MAP4K4	0	genome.wustl.edu	37	chr2	102448266	102448266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctccctactggatggctcctGaggtcatcgcctgtgatgag	12	12	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	102448266	102448266	G	A	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	170	0	0	131	43	24.71	-	-	-	A	102448266	G	A	102448266	3	1	815	1	0	0	0	0	1	0	0	0	9333	1291	45	2	618	2	MAP4K4	2	102448266	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	3258930	102448266	140751107	16	68694										
EDAR	0	genome.wustl.edu	37	chr2	109546677	109546677	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcagtttgagtattccgctcGggctgagcacatcagagaca	12	10	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	109546677	109546677	G	A	SNP	EDAR	ENST00000376651	human	ensembl	69_37n	-1	known	nonsense	c.73	p.R25*	0.008	NULL	pfam_Death,superfamily_DEATH-like	-	no_errors	EDAR	HGNC	ENSG00000135960	52	0	0	27	34	55.74	-	-	-	A	109546677	G	A	109546677	4	1	815	1	0	0	0	0	0	1	0	0	4940	1124	39	1	1313	1	EDAR	2	109546677	Nonsense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	7098411	109546677	133652696	17	68695										
PMS1	0	genome.wustl.edu	37	chr2	190728571	190728571	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctaaaagatggcagaaaaaaGataaaacccaccagcgcatg	8	9	0	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	190728571	190728571	G	C	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.1959	p.K653N	0.877	NULL	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	86	0	0	75	31	29.25	-	-	-	C	190728571	G	C	190728571	3	2	815	1	0	0	0	0	1	0	0	0	12216	933	33	2	1993	2	PMS1	2	190728571	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	81181894	190728571	52470802	18	68696										
CCDC150	0	genome.wustl.edu	37	chr2	197521749	197521749	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gacctgaagctgttgcatctCgaagttatgaatttgcgcca	10	9	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	197521749	197521749	C	T	SNP	CCDC150	ENST00000389175	human	ensembl	69_37n	1	known	silent	c.465	p.L155	0.562	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395	115	1	0.85	67	15	18.29	-	-	-	T	197521749	C	T	197521749	2	4	815	1	0	0	0	0	0	0	0	1	2810	871	31	1		1	CCDC150	2	197521749	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	6793178	197521749	45677624	19	68697										
ZDBF2	0	genome.wustl.edu	37	chr2	207169562	207169562	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttgaggatgaggatgctaccGaagagagaccatccgaggtt	14	7	0	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	207169562	207169562	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	nonsense	c.310	p.E104*	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	92	0	0	53	24	31.17	-	-	-	T	207169562	G	T	207169562	4	4	815	1	0	0	0	0	0	1	0	0	17695	1059	37	3	320	3	ZDBF2	2	207169562	Nonsense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	9647813	207169562	36029811	20	68698										
CRYGA	0	genome.wustl.edu	37	chr2	209025769	209025769	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	taaggcctcggtagtcatctCtctcgtacagccttaacttg	8	12	3	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	2	209025769	209025769	C	T	SNP	CRYGA	ENST00000304502	human	ensembl	69_37n	-1	known	missense	c.284	p.R95K	0.963	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582	55	0	0	42	13	23.64	-	-	-	T	209025769	C	T	209025769	3	4	815	1	0	0	0	0	1	0	0	0	3944	913	32	2	244	2	CRYGA	2	209025769	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	1856207	209025769	34173604	21	68699										
ZNF860	0	genome.wustl.edu	37	chr3	32032288	32032288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	acaaatgtgatgattttgacGaggccttcagtcaagcttca	9	8	3	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	32032288	32032288	G	A	SNP	ZNF860	ENST00000360311	human	ensembl	69_37n	1	known	missense	c.1717	p.E573K	0.988	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385	92	0	0	96	24	20	-	-	-	A	32032288	G	A	32032288	3	1	815	1	0	0	0	0	1	0	0	0	18287	1059	37	1	1719	1	ZNF860	3	32032288	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		32032288	165990142	22	68700										
SCN10A	0	genome.wustl.edu	37	chr3	38805068	38805068	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcctgagatcccacggagatCtattgctgtgccaacatatc	9	12	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	38805068	38805068	C	G	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.619	p.D207H	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	138	0	0	129	37	22.29	-	-	-	G	38805068	C	G	38805068	3	3	815	1	0	0	0	0	1	0	0	0	14000	913	32	2	5343	2	SCN10A	3	38805068	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	6772780	38805068	159217362	23	68701										
MOBP	0	genome.wustl.edu	37	chr3	39555004	39555004	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tggatgaagttatctggcttCaaatattatgcaggggcaaa	11	5	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	39555004	39555004	C	T	SNP	MOBP	ENST00000479860	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MOBP	HGNC	ENSG00000168314	49	0	0	53	9	14.52	-	-	-	T	39555004	C	T	39555004	1	4	815	0	1	0	0	0	0	0	0	0	9760	841	29	2		2	MOBP	3	39555004	RNA	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	749936	39555004	158467426	24	68702										
ZNF167	0	genome.wustl.edu	37	chr3	44611611	44611611	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aagggagcagactagaaaatGatttcttggaaataacagat	10	4	1	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	44611611	44611611	G	C	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	1	known	missense	c.1009	p.D337H	0.001	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	81	0	0	88	11	11.11	-	-	-	C	44611611	G	C	44611611	3	2	815	1	0	0	0	0	1	0	0	0	17837	1290	45	2	1027	2	ZNF167	3	44611611	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	5056607	44611611	153410819	25	68703										
XCR1	0	genome.wustl.edu	37	chr3	46063195	46063195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agatccacacaggcaacaagCaggcgaacaccaggtctgag	11	12	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	46063195	46063195	C	T	SNP	XCR1	ENST00000309285	human	ensembl	69_37n	-1	known	missense	c.245	p.C82Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	253	0	0	152	37	19.58	-	-	-	T	46063195	C	T	46063195	3	4	815	1	0	0	0	0	1	0	0	0	17522	710	25	4	760	4	XCR1	3	46063195	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	1451584	46063195	151959235	26	68704										
PBRM1	0	genome.wustl.edu	37	chr3	52584826	52584826	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ataggggccactccttggttCatcacacctataattcagaa	7	11	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	52584826	52584826	C	T	SNP	PBRM1	ENST00000296302	human	ensembl	69_37n	-1	known	missense	c.4617	p.M1539I	1.000	NULL	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_superfamily,superfamily_Bromodomain,superfamily_HMG_superfamily,smart_Bromodomain,smart_BAH_dom,smart_HMG_superfamily,pfscan_BAH_dom,pfscan_HMG_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939	73	0	0	59	15	20.27	-	-	-	T	52584826	C	T	52584826	3	4	815	1	0	0	0	0	1	0	0	0	11564	826	29	2	464	2	PBRM1	3	52584826	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	6521631	52584826	145437604	27	68705										
OR5H6	0	genome.wustl.edu	37	chr3	97983636	97983636	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgtcatttataggtggccttCttcatgctttaatccatgaa	7	8	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	97983636	97983636	C	T	SNP	OR5H6	ENST00000383696	human	ensembl	69_37n	1	known	missense	c.508	p.L170F	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	72	0	0	112	33	22.76	-	-	-	T	97983636	C	T	97983636	3	4	815	1	0	0	0	0	1	0	0	0	11236	913	32	2	510	2	OR5H6	3	97983636	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	45398810	97983636	100038794	28	68706										
CD200R1L	0	genome.wustl.edu	37	chr3	112538665	112538665	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aacaaatcctgtggtgaccaGaatgaccacaaaaagagaga	9	8	0	5			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	112538665	112538665	G	A	SNP	CD200R1L	ENST00000398214	human	ensembl	69_37n	-1	known	silent	c.757	p.L253	0.511	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1L	HGNC	ENSG00000206531	85	0	0	98	21	17.65	-	-	-	A	112538665	G	A	112538665	2	1	815	1	0	0	0	0	0	0	0	1	3011	933	33	2		2	CD200R1L	3	112538665	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	14555029	112538665	85483765	29	68707										
B4GALT4	0	genome.wustl.edu	37	chr3	118945872	118945872	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtgagatctggtttgaaaatGagcttgctctggcctcctac	11	9	2	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	118945872	118945872	G	C	SNP	B4GALT4	ENST00000359213	human	ensembl	69_37n	-1	known	silent	c.270	p.L90	0.038	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT4	HGNC	ENSG00000121578	110	0	0	86	32	27.12	-	-	-	C	118945872	G	C	118945872	2	2	815	1	0	0	0	0	0	0	0	1	1277	1277	45	2		2	B4GALT4	3	118945872	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	6407207	118945872	79076558	30	68708										
SOX14	0	genome.wustl.edu	37	chr3	137484310	137484310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccaggcatgaccaagactggCatagacccttattcgtcagc	9	13	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	137484310	137484310	C	T	SNP	SOX14	ENST00000306087	human	ensembl	69_37n	1	known	silent	c.684	p.G228	1.000	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX14	HGNC	ENSG00000168875	20	0	0	18	13	41.94	-	-	-	T	137484310	C	T	137484310	2	4	815	1	0	0	0	0	0	0	0	1	15034	697	25	4		4	SOX14	3	137484310	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	18538438	137484310	60538120	31	68709										
USP13	0	genome.wustl.edu	37	chr3	179472637	179472637	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	catagtcattcctgatgactCaaaaggtaccatctcctgcc	6	13	3	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	3	179472637	179472637	C	A	SNP	USP13	ENST00000263966	human	ensembl	69_37n	1	known	nonsense	c.1916	p.S639*	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	99	0	0	88	13	12.75	-	-	-	A	179472637	C	A	179472637	4	1	815	1	0	0	0	0	0	1	0	0	17141	838	29	2	1974	2	USP13	3	179472637	Nonsense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	41988327	179472637	18549793	32	68710										
BMP2K	0	genome.wustl.edu	37	chr4	79792136	79792137	+	In_Frame_Ins	INS	-	-	CAG													0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agcagcagcagcaacagcaaINScagcagcagcagcagcagca							TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	4	79792136	79792137	-	CAG	INS	BMP2K	ENST00000335016	human	ensembl	69_37n	1	known	in_frame_ins	c.1431_1432	p.481in_frame_insQ	0.956:0.960	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	30	0	0	40	6	13.04	-	-	-	CAG	79792137	-	CAG	79792136	7	5	815	1	0	1	1	0	0	0	0	0	1465	40	2	0	1473	0	BMP2K	4	79792136	In_Frame_Ins	INS	-	TCGA-E2-A1LG-01A-21D-A14K-09		79792136	111362140	33	68711										
PCDH10	0	genome.wustl.edu	37	chr4	134072178	134072178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccttcagcagccacatttcgCcccgggcgcgggagcttttc	11	16	1	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	4	134072178	134072178	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.883	p.P295S	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	39	0	0	16	11	40.74	-	-	-	T	134072178	C	T	134072178	3	4	815	1	0	0	0	0	1	0	0	0	11580	739	26	4	885	4	PCDH10	4	134072178	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	54280042	134072178	57082098	34	68712										
ENPP6	0	genome.wustl.edu	37	chr4	185038159	185038159	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccgtgatccgagaaaataatGacgttcaggcggtcctgcag	12	10	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	4	185038159	185038159	G	A	SNP	ENPP6	ENST00000296741	human	ensembl	69_37n	-1	known	silent	c.705	p.V235	0.955	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303	104	1	0.95	49	17	25.76	-	-	-	A	185038159	G	A	185038159	2	1	815	1	0	0	0	0	0	0	0	1	5171	1277	45	2		2	ENPP6	4	185038159	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	50965981	185038159	6116117	35	68713										
DNAH5	0	genome.wustl.edu	37	chr5	13762836	13762836	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcctagcaggcttaccttcaGaggcagtacttctttgttta	9	10	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	13762836	13762836	G	C	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.10276	p.L3426V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	40	0	0	57	12	17.39	-	-	-	C	13762836	G	C	13762836	3	2	815	1	0	0	0	0	1	0	0	0	4640	933	33	2	3678	2	DNAH5	5	13762836	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		13762836	167152424	36	68714										
MAP1B	0	genome.wustl.edu	37	chr5	71492844	71492844	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ggaagacaaattcagcagatCtgctttacgtgatgcttact	9	8	2	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	71492844	71492844	C	G	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	missense	c.3662	p.S1221C	0.991	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	81	0	0	77	16	17.2	-	-	-	G	71492844	C	G	71492844	3	3	815	1	0	0	0	0	1	0	0	0	9299	913	32	2	3680	2	MAP1B	5	71492844	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	57730008	71492844	109422416	37	68715										
ERAP2	0	genome.wustl.edu	37	chr5	96215756	96215756	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aaatcacgaatgccacccttCagtcagaggaagattcaaga	8	10	4	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	96215756	96215756	C	G	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	missense	c.367	p.Q123E	0.004	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	68	0	0	78	11	12.36	-	-	-	G	96215756	C	G	96215756	3	3	815	1	0	0	0	0	1	0	0	0	5241	827	29	2	369	2	ERAP2	5	96215756	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	24722912	96215756	84699504	38	68716										
KIF3A	0	genome.wustl.edu	37	chr5	132034940	132034940	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atcaaagactgacgcagactCtcctcagtataggcaagata	8	10	3	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	132034940	132034940	C	G	SNP	KIF3A	ENST00000378735	human	ensembl	69_37n	-1	known	missense	c.1983	p.E661D	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	133	1	0.75	175	55	23.81	-	-	-	G	132034940	C	G	132034940	3	3	815	1	0	0	0	0	1	0	0	0	8352	912	32	2	133	2	KIF3A	5	132034940	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	35819184	132034940	48880320	39	68717										
TCOF1	0	genome.wustl.edu	37	chr5	149775971	149775971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccagtgcctcctgggccaacCctggcccctgaatgaggccc	11	18	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	149775971	149775971	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	1	known	missense	c.4019	p.P1340L	0.784	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	19	0	0	21	11	34.38	-	-	-	T	149775971	C	T	149775971	3	4	815	1	0	0	0	0	1	0	0	0	15803	623	22	4	4027	4	TCOF1	5	149775971	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	17741031	149775971	31139289	40	68718										
RPS14	0	genome.wustl.edu	37	chr5	149825182	149825182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gggcacttaccaatccgcccGatcttcatacccgagcgggc	10	16	2	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	149825182	149825182	G	A	SNP	RPS14	ENST00000519855	human	ensembl	69_37n	-1	putative	missense	c.203	p.S68L	0.937	pfam_Ribosomal_S11	pfam_Ribosomal_S11	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPS14	HGNC	ENSG00000164587	37	0	0	26	6	18.75	-	-	-	A	149825182	G	A	149825182	3	1	815	1	0	0	0	0	1	0	0	0	13710	1048	37	1	85	1	RPS14	5	149825182	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	49211	149825182	31090078	41	68719										
SLC36A2	0	genome.wustl.edu	37	chr5	150696504	150696504	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atgctgatcagggcgtccttGaagatggtgagggggctcat	16	7	2	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	150696504	150696504	G	A	SNP	SLC36A2	ENST00000335244	human	ensembl	69_37n	-1	known	silent	c.1326	p.F442	0.965	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	118	1	0.84	107	30	21.9	-	-	-	A	150696504	G	A	150696504	2	1	815	1	0	0	0	0	0	0	0	1	14683	1281	45	2		2	SLC36A2	5	150696504	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	871322	150696504	30218756	42	68720										
CDHR2	0	genome.wustl.edu	37	chr5	176002162	176002162	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atagtcctcaatggcagcctCagctacaacaacaagagcgc	8	13	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	5	176002162	176002162	C	G	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	silent	c.573	p.L191	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	65	0	0	58	13	18.31	-	-	-	G	176002162	C	G	176002162	2	3	815	1	0	0	0	0	0	0	0	1	3148	813	29	2		2	CDHR2	5	176002162	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	25305658	176002162	4913098	43	68721										
HIST1H2AJ	0	genome.wustl.edu	37	chr6	27782245	27782245	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagaagcttgttgagctcctCatcgttgcggatggccagct	12	11	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	6	27782245	27782245	C	A	SNP	HIST1H2AJ	ENST00000333151	human	ensembl	69_37n	-1	known	nonsense	c.274	p.E92*	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AJ	HGNC	ENSG00000182611	144	0	0	134	31	18.79	-	-	-	A	27782245	C	A	27782245	4	1	815	1	0	0	0	0	0	1	0	0	7187	835	29	2	116	2	HIST1H2AJ	6	27782245	Nonsense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		27782245	143332822	44	68722										
MCM3	0	genome.wustl.edu	37	chr6	52146918	52146918	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	taacgtcgctctatggtcttCttagtagcaggacagtagtg	11	8	3	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	6	52146918	52146918	C	T	SNP	MCM3	ENST00000229854	human	ensembl	69_37n	-1	known	silent	c.456	p.K152	1.000	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_3	-	no_errors	MCM3	HGNC	ENSG00000112118	103	1	0.96	92	22	19.3	-	-	-	T	52146918	C	T	52146918	2	4	815	1	0	0	0	0	0	0	0	1	9458	912	32	2		2	MCM3	6	52146918	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	24364673	52146918	118968149	45	68723										
BACH2	0	genome.wustl.edu	37	chr6	90661581	90661581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cccaaagcccctggctgtgaCctgcaaaacaaacagggaaa	9	13	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	6	90661581	90661581	C	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.244	p.V82F	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	28	0	0	8	7	46.67	-	-	-	A	90661581	C	A	90661581	3	1	815	1	0	0	0	0	1	0	0	0	1288	521	18	4	2293	4	BACH2	6	90661581	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	38514663	90661581	80453486	46	68724										
THEMIS	0	genome.wustl.edu	37	chr6	128221997	128221997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gagtgcttaccttcaagataGatgcctgcctggatttctag	10	9	2	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	6	128221997	128221997	G	C	SNP	THEMIS	ENST00000543064	human	ensembl	69_37n	-1	known	missense	c.81	p.I27M	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673	162	1	0.61	102	53	33.97	-	-	-	C	128221997	G	C	128221997	3	2	815	1	0	0	0	0	1	0	0	0	15955	932	33	2	1989	2	THEMIS	6	128221997	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	37560416	128221997	42893070	47	68725										
TBP	0	genome.wustl.edu	37	chr6	170871091	170871091	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagcagcagcagcagcagcaGcagcagcagcagcaacaggc	13	14	0	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	6	170871091	170871091	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	1	known	silent	c.267	p.Q89	0.078	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	48	0	0	60	9	13.04	-	-	-	A	170871091	G	A	170871091	2	1	815	1	0	0	0	0	0	0	0	1	15739	962	34	4		4	TBP	6	170871091	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	42649094	170871091	243976	48	68726										
TBX20	0	genome.wustl.edu	37	chr7	35284610	35284610	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgagtttcaccttttcaaaaGacaccatctgtttgagtagt	7	8	3	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	35284610	35284610	G	T	SNP	TBX20	ENST00000408931	human	ensembl	69_37n	-1	known	missense	c.605	p.S202Y	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX20	HGNC	ENSG00000164532	253	1	0.39	133	45	25.28	-	-	-	T	35284610	G	T	35284610	3	4	815	1	0	0	0	0	1	0	0	0	15751	942	33	2	759	2	TBX20	7	35284610	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		35284610	123854053	49	68727										
ARPC1B	0	genome.wustl.edu	37	chr7	98991734	98991734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atggcggcatgagtatctggGatgtgaaggtgaggcttgcc	17	6	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	98991734	98991734	G	A	SNP	ARPC1B	ENST00000252725	human	ensembl	69_37n	1	known	missense	c.1072	p.D358N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1B	HGNC	ENSG00000130429	121	0	0	83	22	20.95	-	-	-	A	98991734	G	A	98991734	3	1	815	1	0	0	0	0	1	0	0	0	974	1174	41	2	1102	2	ARPC1B	7	98991734	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	63707124	98991734	60146929	50	68728										
GSTK1	0	genome.wustl.edu	37	chr7	142962324	142962324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tcacacccctctccccgcacCgccttcctgctgtcttctct	4	22	4	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	142962324	142962324	C	T	SNP	GSTK1	ENST00000479303	human	ensembl	69_37n	1	known	missense	c.523	p.R175C	0.000	NULL	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	-	no_errors	GSTK1	HGNC	ENSG00000197448	84	0	0	50	14	21.88	-	-	-	T	142962324	C	T	142962324	3	4	815	1	0	0	0	0	1	0	0	0	6887	652	23	1	537	1	GSTK1	7	142962324	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	43970590	142962324	16176339	51	68729										
ZNF425	0	genome.wustl.edu	37	chr7	148802280	148802280	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcctgagttcggacttccctCtggacgagtttttgtacttt	10	10	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	148802280	148802280	C	G	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.683	p.R228T	0.110	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	82	0	0	65	22	25.29	-	-	-	G	148802280	C	G	148802280	3	3	815	1	0	0	0	0	1	0	0	0	17995	913	32	2	1579	2	ZNF425	7	148802280	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	5839956	148802280	10336383	52	68730										
MLL3	0	genome.wustl.edu	37	chr7	151917645	151917646	+	Frame_Shift_Del	DEL	TG	TG	-													0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tcaccatcccttgaatgctcTgattggatgtctggaggggt							TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	151917645	151917646	TG	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.3675_3674	p.S1225fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	209	0	0	140	19	10.8	-	-	-	-	151917646	TG	-	151917645	7	5	815	1	0	1	0	1	0	0	0	0	9693	1567	55	0	11208	0	MLL3	7	151917645	Frame_Shift_Del	DEL	TG	TCGA-E2-A1LG-01A-21D-A14K-09	3115365	151917645	7221018	53	68731										
MLL3	0	genome.wustl.edu	37	chr7	151921673	151921673	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagtgcactcaagacacctcCaacctttgctaagaaccact	5	15	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	7	151921673	151921673	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.3005	p.W1002*	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	72	0	0	47	10	17.54	-	-	-	T	151921673	C	T	151921673	4	4	815	1	0	0	0	0	0	1	0	0	9693	595	21	4	11894	4	MLL3	7	151921673	Nonsense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	4028	151921673	7216990	54	68732										
MYOM2	0	genome.wustl.edu	37	chr8	2088660	2088660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttcaagagatgctaagatctCatccagtgagcatatgagaa	9	7	2	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	8	2088660	2088660	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.3815	p.S1272L	0.957	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	100	1	0.98	35	5	12.5	-	-	-	T	2088660	C	T	2088660	3	4	815	1	0	0	0	0	1	0	0	0	10164	838	29	2	3941	2	MYOM2	8	2088660	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		2088660	144275362	55	68733										
RGS22	0	genome.wustl.edu	37	chr8	101083735	101083735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aaattcatgccggacttgctCcatcttacttgtgagaccaa	7	11	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	8	101083735	101083735	C	A	SNP	RGS22	ENST00000360863	human	ensembl	69_37n	-1	known	missense	c.456	p.W152C	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS22	HGNC	ENSG00000132554	140	0	0	120	39	24.53	-	-	-	A	101083735	C	A	101083735	3	1	815	1	0	0	0	0	1	0	0	0	13389	856	30	2	3426	2	RGS22	8	101083735	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	98995075	101083735	45280287	56	68734										
ABRA	0	genome.wustl.edu	37	chr8	107773358	107773358	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccatgtttcctggcacgcatGagaatgcccactactttatc	7	13	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	8	107773358	107773358	G	C	SNP	ABRA	ENST00000311955	human	ensembl	69_37n	-1	known	silent	c.1053	p.L351	0.596	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	155	1	0.64	79	32	28.83	-	-	-	C	107773358	G	C	107773358	2	2	815	1	0	0	0	0	0	0	0	1	100	1277	45	2		2	ABRA	8	107773358	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	6689623	107773358	38590664	57	68735										
SPATC1	0	genome.wustl.edu	37	chr8	145101812	145101812	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctgctgctgctctcctgcctCagccagctggcgcacgatga	11	16	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	8	145101812	145101812	C	T	SNP	SPATC1	ENST00000377470	human	ensembl	69_37n	1	known	silent	c.1731	p.L577	1.000	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583	26	0	0	5	4	44.44	-	-	-	T	145101812	C	T	145101812	2	4	815	1	0	0	0	0	0	0	0	1	15108	813	29	2		2	SPATC1	8	145101812	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	37328454	145101812	1262210	58	68736										
PTPRD	0	genome.wustl.edu	37	chr9	8518119	8518119	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gaactcaacattcgtgcctgGacatccctcggggcactgga	11	13	1	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	8518119	8518119	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	silent	c.1272	p.V424	0.989	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	256	1	0.39	139	51	26.84	-	-	-	A	8518119	G	A	8518119	2	1	815	1	0	0	0	0	0	0	0	1	12882	1161	41	2		2	PTPRD	9	8518119	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		8518119	132695312	59	68737										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18639298	18639298	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	actaaaggtgaaaacagtctCagctccacaggaactttcct	7	11	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	18639298	18639298	C	G	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	silent	c.723	p.L241	1.000	pfam_ADAM_spacer1	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	102	0	0	61	10	14.08	-	-	-	G	18639298	C	G	18639298	2	3	815	1	0	0	0	0	0	0	0	1	274	813	29	2		2	ADAMTSL1	9	18639298	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	10121179	18639298	122574133	60	68738										
PLIN2	0	genome.wustl.edu	37	chr9	19116288	19116288	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cgctgggtctcctggctgctCttgtccatctctgcaccttg	10	15	3	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	19116288	19116288	C	G	SNP	PLIN2	ENST00000276914	human	ensembl	69_37n	-1	known	missense	c.1272	p.K424N	0.000	pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872	88	0	0	69	11	13.75	-	-	-	G	19116288	C	G	19116288	3	3	815	1	0	0	0	0	1	0	0	0	12164	912	32	2	45	2	PLIN2	9	19116288	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	476990	19116288	122097143	61	68739										
RGP1	0	genome.wustl.edu	37	chr9	35749738	35749738	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccttgtttccttctagatctGattccggagctgccatgatt	8	11	2	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	35749738	35749738	G	C	SNP	RGP1	ENST00000456972	human	ensembl	69_37n	1	known	missense	c.106	p.D36H	0.002	NULL	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185	129	0	0	82	23	21.9	-	-	-	C	35749738	G	C	35749738	3	2	815	1	0	0	0	0	1	0	0	0	13367	1290	45	2	116	2	RGP1	9	35749738	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	16633450	35749738	105463693	62	68740										
RGP1	0	genome.wustl.edu	37	chr9	35751661	35751661	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gatggccgagggaaagttggGacgtttggcatcttcaaatc	14	7	2	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	35751661	35751661	G	A	SNP	RGP1	ENST00000456972	human	ensembl	69_37n	1	known	silent	c.792	p.G264	0.994	pfam_Rgp1	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185	160	1	0.62	91	28	23.53	-	-	-	A	35751661	G	A	35751661	2	1	815	1	0	0	0	0	0	0	0	1	13367	1161	41	2		2	RGP1	9	35751661	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	1923	35751661	105461770	63	68741										
ANXA1	0	genome.wustl.edu	37	chr9	75773624	75773624	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttcttagcaaactgtgaagtCatccaaaggtggtcccggat	10	9	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	75773624	75773624	C	T	SNP	ANXA1	ENST00000257497	human	ensembl	69_37n	1	known	missense	c.80	p.S27L	0.017	prints_AnnexinI	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	52	0	0	53	8	13.11	-	-	-	T	75773624	C	T	75773624	3	4	815	1	0	0	0	0	1	0	0	0	713	838	29	2	86	2	ANXA1	9	75773624	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	40021963	75773624	65439807	64	68742										
CYLC2	0	genome.wustl.edu	37	chr9	105767684	105767684	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcaaacaaaggtgatgaatcGaaggatgccaagaaagatgc	12	6	0	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	105767684	105767684	G	C	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	silent	c.771	p.S257	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	101	0	0	117	18	13.33	-	-	-	C	105767684	G	C	105767684	2	2	815	1	0	0	0	0	0	0	0	1	4173	1045	37	3		3	CYLC2	9	105767684	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	29994060	105767684	35445747	65	68743										
AKNA	0	genome.wustl.edu	37	chr9	117108251	117108251	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cttggtggtcttgctcttctCagagaacagtggtagggagg	15	7	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	117108251	117108251	C	G	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.3553	p.E1185Q	0.535	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	131	0	0	64	15	18.99	-	-	-	G	117108251	C	G	117108251	3	3	815	1	0	0	0	0	1	0	0	0	463	835	29	2	786	2	AKNA	9	117108251	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	11340567	117108251	24105180	66	68744										
FAM129B	0	genome.wustl.edu	37	chr9	130286102	130286102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ggggcacttgaggatgggggCactgcccgactttgccgtgg	18	10	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	130286102	130286102	C	T	SNP	FAM129B	ENST00000373312	human	ensembl	69_37n	-1	known	missense	c.445	p.A149T	0.004	pfscan_Pleckstrin_homology	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830	93	0	0	67	19	22.09	-	-	-	T	130286102	C	T	130286102	3	4	815	1	0	0	0	0	1	0	0	0	5477	710	25	4	1835	4	FAM129B	9	130286102	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	13177851	130286102	10927329	67	68745										
LAMC3	0	genome.wustl.edu	37	chr9	133924412	133924412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtgtttgctgtctaggagccGaaggctggtgggccagaagt	17	7	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	9	133924412	133924412	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	1	known	missense	c.1525	p.E509K	0.002	pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	34	0	0	28	7	20	-	-	-	A	133924412	G	A	133924412	3	1	815	1	0	0	0	0	1	0	0	0	8670	1059	37	1	1559	1	LAMC3	9	133924412	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	3638310	133924412	7289019	68	68746										
FBXO18	0	genome.wustl.edu	37	chr10	5948419	5948419	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	acgtgggtcctgatcccattCctgactcatactatgggctt	9	12	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	10	5948419	5948419	C	G	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	missense	c.730	p.P244A	0.998	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	39	0	0	17	16	48.48	-	-	-	G	5948419	C	G	5948419	3	3	815	1	0	0	0	0	1	0	0	0	5777	855	30	2	749	2	FBXO18	10	5948419	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		5948419	129586328	69	68747										
FAM178A	0	genome.wustl.edu	37	chr10	102676827	102676827	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgtccaggcaccacccggaaGaaagcccactgggagctaaa	11	13	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	10	102676827	102676827	G	C	SNP	FAM178A	ENST00000370269	human	ensembl	69_37n	1	known	missense	c.685	p.E229Q	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906	71	0	0	22	10	31.25	-	-	-	C	102676827	G	C	102676827	3	2	815	1	0	0	0	0	1	0	0	0	5543	943	33	2	695	2	FAM178A	10	102676827	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	96728408	102676827	32857920	70	68748										
TNNI2	0	genome.wustl.edu	37	chr11	1862416	1862416	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agggccaacctgaagcaggtCaagaaggaggacacagagaa	14	8	1	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	1862416	1862416	C	T	SNP	TNNI2	ENST00000252898	human	ensembl	69_37n	1	known	silent	c.432	p.V144	1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNI2	HGNC	ENSG00000130598	35	0	0	24	5	17.24	-	-	-	T	1862416	C	T	1862416	2	4	815	1	0	0	0	0	0	0	0	1	16422	813	29	2		2	TNNI2	11	1862416	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		1862416	133144100	71	68749										
TRPM5	0	genome.wustl.edu	37	chr11	2432657	2432657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cacccggcggaagatccactCcaggcggccgtcatgggggt	15	14	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	2432657	2432657	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2713	p.E905K	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	20	0	0	9	4	30.77	-	-	-	T	2432657	C	T	2432657	3	4	815	1	0	0	0	0	1	0	0	0	16685	864	30	2	818	2	TRPM5	11	2432657	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	570241	2432657	132573859	72	68750										
PAMR1	0	genome.wustl.edu	37	chr11	35463039	35463039	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgtaagttaccttttatgcaGatgggctgtttccctgacca	9	9	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	35463039	35463039	G	C	SNP	PAMR1	ENST00000278360	human	ensembl	69_37n	-1	known	missense	c.1074	p.I358M	0.962	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_EGF-like,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PAMR1	HGNC	ENSG00000149090	164	1	0.61	101	42	29.37	-	-	-	C	35463039	G	C	35463039	3	2	815	1	0	0	0	0	1	0	0	0	11486	932	33	2	1159	2	PAMR1	11	35463039	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	33030382	35463039	99543477	73	68751										
LRP4	0	genome.wustl.edu	37	chr11	46897025	46897025	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	acctagtggctgtgcccggtCcacagcctgcatgtccatga	11	14	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	46897025	46897025	C	G	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.3907	p.D1303H	1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	40	0	0	22	8	26.67	-	-	-	G	46897025	C	G	46897025	3	3	815	1	0	0	0	0	1	0	0	0	9025	855	30	2	1858	2	LRP4	11	46897025	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	11433986	46897025	88109491	74	68752										
TUT1	0	genome.wustl.edu	37	chr11	62343377	62343377	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtaaagggatcggcgtagcaGagagcagggagctgggggag	21	5	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	62343377	62343377	G	C	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	missense	c.1928	p.S643C	0.996	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	61	0	0	38	13	25.49	-	-	-	C	62343377	G	C	62343377	3	2	815	1	0	0	0	0	1	0	0	0	16877	942	33	2	814	2	TUT1	11	62343377	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	15446352	62343377	72663139	75	68753										
PCNXL3	0	genome.wustl.edu	37	chr11	65389721	65389721	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctgcacgaatcccaggagcaGacactgatggaagaagcgcc	12	12	0	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	65389721	65389721	G	T	SNP	PCNXL3	ENST00000355703	human	ensembl	69_37n	1	known	missense	c.2241	p.Q747H	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136	37	0	0	19	8	29.63	-	-	-	T	65389721	G	T	65389721	3	4	815	1	0	0	0	0	1	0	0	0	11666	933	33	2	2283	2	PCNXL3	11	65389721	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	3046344	65389721	69616795	76	68754										
CCDC67	0	genome.wustl.edu	37	chr11	93148236	93148236	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cttcgacatttcaagccaaaGaaatgacaagtcctttggtt	7	9	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	93148236	93148236	G	C	SNP	CCDC67	ENST00000298050	human	ensembl	69_37n	1	known	missense	c.1594	p.E532Q	0.997	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	271	0	0	235	68	22.44	-	-	-	C	93148236	G	C	93148236	3	2	815	1	0	0	0	0	1	0	0	0	2866	943	33	2	1640	2	CCDC67	11	93148236	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	27758515	93148236	41858280	77	68755										
CEP164	0	genome.wustl.edu	37	chr11	117267896	117267896	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccttgtgcagcagacacgctCcatgcggaggcggcagacag	14	13	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	117267896	117267896	C	G	SNP	CEP164	ENST00000278935	human	ensembl	69_37n	1	known	missense	c.3368	p.S1123C	1.000	NULL	superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	CEP164	HGNC	ENSG00000110274	68	0	0	42	5	10.64	-	-	-	G	117267896	C	G	117267896	3	3	815	1	0	0	0	0	1	0	0	0	3278	855	30	2	3466	2	CEP164	11	117267896	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	24119660	117267896	17738620	78	68756										
DSCAML1	0	genome.wustl.edu	37	chr11	117651335	117651335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gggtagagctgcagcgtcccGttggcgtggacgtgccggat	18	10	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	117651335	117651335	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.417	p.N139	0.999	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	152	0	0	48	68	58.62	-	-	-	A	117651335	G	A	117651335	2	1	815	1	0	0	0	0	0	0	0	1	4804	1136	40	1		1	DSCAML1	11	117651335	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	383439	117651335	17355181	79	68757										
CBL	0	genome.wustl.edu	37	chr11	119148506	119148506	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cgaaatcagaatcctgatctGactggcttatgtgaaccaac	8	10	2	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	119148506	119148506	G	A	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	silent	c.1047	p.L349	1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	114	0	0	97	15	13.39	-	-	-	A	119148506	G	A	119148506	2	1	815	1	0	0	0	0	0	0	0	1	2725	1277	45	2		2	CBL	11	119148506	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	1497171	119148506	15858010	80	68758										
CBL	0	genome.wustl.edu	37	chr11	119155748	119155748	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccccggtgccaccacgacttGaccttctgccgcagcgagta	10	17	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	119155748	119155748	G	C	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	missense	c.1501	p.D501H	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	84	0	0	59	19	24.36	-	-	-	C	119155748	G	C	119155748	3	2	815	1	0	0	0	0	1	0	0	0	2725	1290	45	2	1539	2	CBL	11	119155748	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	7242	119155748	15850768	81	68759										
ZNF202	0	genome.wustl.edu	37	chr11	123601456	123601456	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tagcggaagcgtcggaagttCtggtgggaggtttccagcac	16	8	1	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	11	123601456	123601456	C	T	SNP	ZNF202	ENST00000336139	human	ensembl	69_37n	-1	known	silent	c.141	p.Q47	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261	87	0	0	70	16	18.6	-	-	-	T	123601456	C	T	123601456	2	4	815	1	0	0	0	0	0	0	0	1	17859	912	32	2		2	ZNF202	11	123601456	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	4445708	123601456	11405060	82	68760										
DENND5B	0	genome.wustl.edu	37	chr12	31632879	31632879	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttgaaacatacagggtgtctCtgctaatatcataggagttg	10	6	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	12	31632879	31632879	C	T	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.653	p.R218K	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	160	0	0	104	29	21.8	-	-	-	T	31632879	C	T	31632879	3	4	815	1	0	0	0	0	1	0	0	0	4473	913	32	2	3352	2	DENND5B	12	31632879	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		31632879	102219016	83	68761										
LMBR1L	0	genome.wustl.edu	37	chr12	49500499	49500499	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tccacacaatggagtaggtaGacattgttacgcccattttg	9	9	0	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	12	49500499	49500499	G	C	SNP	LMBR1L	ENST00000417750	human	ensembl	69_37n	-1	known	missense	c.188	p.S63C	0.002	NULL	NULL	-	no_errors	LMBR1L	HGNC	ENSG00000139636	54	0	0	33	11	25	-	-	-	C	49500499	G	C	49500499	3	2	815	1	0	0	0	0	1	0	0	0	8897	957	33	2		2	LMBR1L	12	49500499	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	17867620	49500499	84351396	84	68762										
BLOC1S1	0	genome.wustl.edu	37	chr12	56112976	56112976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcagacaggccagtggatcgGaatggtggagaacttcaacc	14	9	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	12	56112976	56112976	G	A	SNP	BLOC1S1	ENST00000548925	human	ensembl	69_37n	1	known	missense	c.320	p.G107E	0.984	pfam_GCN5L1	pfam_GCN5L1	-	no_errors	BLOC1S1	HGNC	ENSG00000135441	59	0	0	46	13	22.03	-	-	-	A	56112976	G	A	56112976	3	1	815	1	0	0	0	0	1	0	0	0	1453	1174	41	2	246	2	BLOC1S1	12	56112976	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	6612477	56112976	77738919	85	68763										
CHPT1	0	genome.wustl.edu	37	chr12	102117560	102117560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctgtctttttggggccaggtCttttgtttttagaccagtac	10	8	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	12	102117560	102117560	C	G	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	1	known	missense	c.1000	p.L334V	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	152	0	0	154	68	30.63	-	-	-	G	102117560	C	G	102117560	3	3	815	1	0	0	0	0	1	0	0	0	3399	913	32	2	1026	2	CHPT1	12	102117560	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	46004584	102117560	31734335	86	68764										
ZMYM2	0	genome.wustl.edu	37	chr13	20579263	20579263	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttgctcaagtggattcaagtGagtccttccaggaattctgt	10	8	3	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	20579263	20579263	G	C	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.1183	p.E395Q	1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	89	0	0	176	23	11.5	-	-	-	C	20579263	G	C	20579263	3	2	815	1	0	0	0	0	1	0	0	0	17796	1291	45	2	1193	2	ZMYM2	13	20579263	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		20579263	94590615	87	68765										
XPO4	0	genome.wustl.edu	37	chr13	21436902	21436902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aaggaatgttcgcagagactCgatgctacctttttccaaga	9	9	0	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	21436902	21436902	C	T	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.271	p.E91K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	116	0	0	221	32	12.65	-	-	-	T	21436902	C	T	21436902	3	4	815	1	0	0	0	0	1	0	0	0	17543	893	31	1	3268	1	XPO4	13	21436902	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	857639	21436902	93732976	88	68766										
EFHA1	0	genome.wustl.edu	37	chr13	22070300	22070300	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aattcatccaaactaatgctCtaataaagtaagagttttta	4	6	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	22070300	22070300	C	G	SNP	EFHA1	ENST00000382374	human	ensembl	69_37n	-1	known	splice_site	c.934-1	e10-1	1.000	-	-	-	no_errors	EFHA1	HGNC	ENSG00000165487	68	0	0	160	22	12.02	-	-	-	G	22070300	C	G	22070300	5	3	815	1	0	0	0	0	0	0	1	0	4978	927	32	2	383	2	EFHA1	13	22070300	Splice_Site	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	633398	22070300	93099578	89	68767										
GTF3A	0	genome.wustl.edu	37	chr13	28001286	28001286	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccttcatcagggactaccatCtgagccgccacattctgact	7	15	4	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	28001286	28001286	C	G	SNP	GTF3A	ENST00000419181	human	ensembl	69_37n	1	known	missense	c.259	p.L87V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GTF3A	HGNC	ENSG00000122034	167	1	0.6	282	37	11.6	-	-	-	G	28001286	C	G	28001286	3	3	815	1	0	0	0	0	1	0	0	0	6922	912	32	2	265	2	GTF3A	13	28001286	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	5930986	28001286	87168592	90	68768										
UGGT2	0	genome.wustl.edu	37	chr13	96529964	96529964	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atacttacatgatgtgccatCactattgtatcaaccacagc	5	11	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	96529964	96529964	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	silent	c.3375	p.V1125	1.000	pfam_UDP-g_GGtrans	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	101	0	0	248	34	12.06	-	-	-	T	96529964	C	T	96529964	2	4	815	1	0	0	0	0	0	0	0	1	17039	813	29	2		2	UGGT2	13	96529964	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	68528678	96529964	18639914	91	68769										
KDELC1	0	genome.wustl.edu	37	chr13	103446142	103446142	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagaggacagtcacagttctCatggtaaaccggccctattt	9	11	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	103446142	103446142	C	T	SNP	KDELC1	ENST00000376004	human	ensembl	69_37n	-1	known	missense	c.403	p.E135K	1.000	NULL	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901	126	0	0	151	26	14.69	-	-	-	T	103446142	C	T	103446142	3	4	815	1	0	0	0	0	1	0	0	0	8171	835	29	2	1137	2	KDELC1	13	103446142	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	6916178	103446142	11723736	92	68770										
COL4A2	0	genome.wustl.edu	37	chr13	111117840	111117840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aggagaaatgggccccccagGactgggccttcccggcctca	13	15	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	13	111117840	111117840	G	T	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	1	known	missense	c.1865	p.G622V	0.981	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	30	0	0	46	11	19.3	-	-	-	T	111117840	G	T	111117840	3	4	815	1	0	0	0	0	1	0	0	0	3720	1174	41	2	1959	2	COL4A2	13	111117840	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	7671698	111117840	4052038	93	68771										
CTAGE5	0	genome.wustl.edu	37	chr14	39796100	39796100	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cagggaatcctctggaccatCagattaccaatgaaagagga	10	9	2	3			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	14	39796100	39796100	C	T	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	nonsense	c.1720	p.Q574*	0.906	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	279	0	0	294	59	16.71	-	-	-	T	39796100	C	T	39796100	4	4	815	1	0	0	0	0	0	1	0	0	4026	827	29	2	1814	2	CTAGE5	14	39796100	Nonsense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		39796100	67553440	94	68772										
NIN	0	genome.wustl.edu	37	chr14	51239789	51239789	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cattgtaccgtcaggatcaaGattatggaatacttcctcga	8	9	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	14	51239789	51239789	G	C	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.691	p.L231V	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	123	0	0	136	24	15	-	-	-	C	51239789	G	C	51239789	3	2	815	1	0	0	0	0	1	0	0	0	10489	942	33	2	5954	2	NIN	14	51239789	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	11443689	51239789	56109751	95	68773										
LCMT2	0	genome.wustl.edu	37	chr15	43622033	43622033	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtcttgaggcctcatctgctCatagaccacgaaaagggcat	10	11	4	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	15	43622033	43622033	C	T	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.655	p.E219K	0.999	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	43	0	0	14	9	39.13	-	-	-	T	43622033	C	T	43622033	3	4	815	1	0	0	0	0	1	0	0	0	8733	835	29	2	1409	2	LCMT2	15	43622033	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		43622033	58909359	96	68774										
SORD	0	genome.wustl.edu	37	chr15	45353269	45353269	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttgttttcctctccaggtgaTcgtgttgccatcgagcctgg	11	11	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	15	45353269	45353269	T	A	SNP	SORD	ENST00000267814	human	ensembl	69_37n	1	known	missense	c.270	p.D90E	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	SORD	HGNC	ENSG00000140263	109	0	0	89	16	15.24	-	-	-	A	45353269	T	A	45353269	3	1	815	1	0	0	0	0	1	0	0	0	15022	1432	50	5	284	5	SORD	15	45353269	Missense_Mutation	SNP	T	TCGA-E2-A1LG-01A-21D-A14K-09	1731236	45353269	57178123	97	68775										
ACAN	0	genome.wustl.edu	37	chr15	89401865	89401865	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gcaccaccaatgtaagtggaGaatcctctgtagccatgggc	11	11	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	15	89401865	89401865	G	A	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	missense	c.6049	p.E2017K	0.708	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	22	0	0	27	15	35.71	-	-	-	A	89401865	G	A	89401865	3	1	815	1	0	0	0	0	1	0	0	0	117	943	33	2	6091	2	ACAN	15	89401865	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	44048596	89401865	13129527	98	68776										
CNGB1	0	genome.wustl.edu	37	chr16	57921825	57921825	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agttctttgagccgggcccgGaggtgagcaagtttgccgcc	15	11	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	16	57921825	57921825	G	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.3396	p.L1132	0.006	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	59	0	0	26	10	27.78	-	-	-	T	57921825	G	T	57921825	2	4	815	1	0	0	0	0	0	0	0	1	3630	1161	41	2		2	CNGB1	16	57921825	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		57921825	32432928	99	68777										
KCTD19	0	genome.wustl.edu	37	chr16	67338408	67338408	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtagttcagagatgctctctCagcaacaggtaggtctgcag	12	9	4	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	16	67338408	67338408	C	T	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	missense	c.367	p.E123K	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	202	0	0	68	34	33.33	-	-	-	T	67338408	C	T	67338408	3	4	815	1	0	0	0	0	1	0	0	0	8160	835	29	2	2469	2	KCTD19	16	67338408	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	9416583	67338408	23016345	100	68778										
TP53	0	genome.wustl.edu	37	chr17	7577515	7577517	+	In_Frame_Del	DEL	TGA	TGA	-													0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgacctggagtcttccagtgTgatgatggtgaggatgggcc							TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	7577515	7577517	TGA	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.766_764	p.I255in_frame_del	1.000:1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	102	1	0.95	26	42	60.87	-	-	-	-	7577517	TGA	-	7577515	7	5	815	1	0	1	0	1	0	0	0	0	16477	1696	59	0	524	0	TP53	17	7577515	In_Frame_Del	DEL	TGA	TCGA-E2-A1LG-01A-21D-A14K-09		7577515	73617695	101	68779										
PLD6	0	genome.wustl.edu	37	chr17	17106133	17106133	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttctgtgccatgaaagcaatCtccctccagctctggagaca	8	13	3	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	17106133	17106133	C	T	SNP	PLD6	ENST00000321560	human	ensembl	69_37n	-1	known	missense	c.707	p.R236K	0.000	NULL	smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD6	HGNC	ENSG00000179598	94	0	0	41	12	22.64	-	-	-	T	17106133	C	T	17106133	3	4	815	1	0	0	0	0	1	0	0	0	12124	913	32	2	55	2	PLD6	17	17106133	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	9528618	17106133	64089077	102	68780										
CDK12	0	genome.wustl.edu	37	chr17	37667820	37667820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	agtcattactttgtggtaccGacctccagaactactgctag	8	11	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	37667820	37667820	G	C	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.2705	p.R902P	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	88	0	0	73	27	27	-	-	-	C	37667820	G	C	37667820	3	2	815	1	0	0	0	0	1	0	0	0	3157	1058	37	3	2735	3	CDK12	17	37667820	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	20561687	37667820	43527390	103	68781										
STAT5B	0	genome.wustl.edu	37	chr17	40370196	40370196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgttctcgttcttgagcagaGacttggcctgctgctcactg	11	11	3	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	40370196	40370196	G	C	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.1142	p.S381C	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	117	1	0.85	91	20	18.02	-	-	-	C	40370196	G	C	40370196	3	2	815	1	0	0	0	0	1	0	0	0	15360	942	33	2	1265	2	STAT5B	17	40370196	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	2702376	40370196	40825014	104	68782										
C17orf53	0	genome.wustl.edu	37	chr17	42232258	42232258	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gtgcacaggttgctgctggaGacgtgccagaatgagctgaa	15	8	0	4			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	42232258	42232258	G	A	SNP	C17orf53	ENST00000319977	human	ensembl	69_37n	1	known	silent	c.1599	p.E533	0.996	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319	133	0	0	75	17	18.48	-	-	-	A	42232258	G	A	42232258	2	1	815	1	0	0	0	0	0	0	0	1	1877	933	33	2		2	C17orf53	17	42232258	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	1862062	42232258	38962952	105	68783										
RHBDF2	0	genome.wustl.edu	37	chr17	74473024	74473024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gccgtagtgccgcttcttccGatcaaaggcaaagtgcttca	10	12	3	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	17	74473024	74473024	G	A	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.1090	p.R364W	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	37	0	0	33	4	10.81	-	-	-	A	74473024	G	A	74473024	3	1	815	1	0	0	0	0	1	0	0	0	13404	1057	37	1	1524	1	RHBDF2	17	74473024	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	32240766	74473024	6722186	106	68784										
COLEC12	0	genome.wustl.edu	37	chr18	331727	331727	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ttttcacgctctgagtctgtGaggccgatccagtggctctc	11	12	4	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	18	331727	331727	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	silent	c.2004	p.L668	0.983	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	192	1	0.52	117	55	31.98	-	-	-	A	331727	G	A	331727	2	1	815	1	0	0	0	0	0	0	0	1	3742	1277	45	2		2	COLEC12	18	331727	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		331727	77745521	107	68785										
CILP2	0	genome.wustl.edu	37	chr19	19654870	19654870	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccatcggcttcaccgcctacCagggcgactttaccattgag	9	15	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	19	19654870	19654870	C	T	SNP	CILP2	ENST00000291495	human	ensembl	69_37n	1	known	nonsense	c.1516	p.Q506*	1.000	superfamily_Carb-bd-like_fold	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP2	HGNC	ENSG00000160161	29	0	0	28	9	24.32	-	-	-	T	19654870	C	T	19654870	4	4	815	1	0	0	0	0	0	1	0	0	3459	595	21	4	1546	4	CILP2	19	19654870	Nonsense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		19654870	39474113	108	68786										
WTIP	0	genome.wustl.edu	37	chr19	34984225	34984225	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgtgtggacatctcatcatgGaaatggtgagcccctgcccc	11	12	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	19	34984225	34984225	G	A	SNP	WTIP	ENST00000585928	human	ensembl	69_37n	1	putative	nonsense	c.342	p.W114*	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WTIP	HGNC	ENSG00000142279	33	0	0	17	5	22.73	-	-	-	A	34984225	G	A	34984225	4	1	815	1	0	0	0	0	0	1	0	0	17507	1175	41	2	909	2	WTIP	19	34984225	Nonsense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	15329355	34984225	24144758	109	68787										
RYR1	0	genome.wustl.edu	37	chr19	38948694	38948694	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tcccatctctcctgcagcatCcgccccaacatctttgtggg	7	17	2	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	19	38948694	38948694	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.1929	p.I643	1.000	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	45	0	0	32	12	27.27	-	-	-	T	38948694	C	T	38948694	2	4	815	1	0	0	0	0	0	0	0	1	13854	845	30	2		2	RYR1	19	38948694	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	3964469	38948694	20180289	110	68788										
FIZ1	0	genome.wustl.edu	37	chr19	56109162	56109162	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	cttgccacattcactgcagtGaaacgggaccctgggggcgg	14	12	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	19	56109162	56109162	G	A	SNP	FIZ1	ENST00000221665	human	ensembl	69_37n	-1	known	missense	c.70	p.H24Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943	32	0	0	27	8	22.86	-	-	-	A	56109162	G	A	56109162	3	1	815	1	0	0	0	0	1	0	0	0	5946	1290	45	2	1428	2	FIZ1	19	56109162	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	17160468	56109162	3019821	111	68789										
U2AF2	0	genome.wustl.edu	37	chr19	56171941	56171941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	atactgggacgtgccaccccCaggctttgagcacatcaccc	9	16	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	19	56171941	56171941	C	T	SNP	U2AF2	ENST00000308924	human	ensembl	69_37n	1	known	missense	c.290	p.P97L	0.994	tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244	65	0	0	29	12	29.27	-	-	-	T	56171941	C	T	56171941	3	4	815	1	0	0	0	0	1	0	0	0	16920	594	21	4	304	4	U2AF2	19	56171941	Missense_Mutation	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	62779	56171941	2957042	112	68790										
DEFB132	0	genome.wustl.edu	37	chr20	239786	239786	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ggacatgttgccactgggggGagacagcattgttcatgtgc	15	8	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	20	239786	239786	G	T	SNP	DEFB132	ENST00000382376	human	ensembl	69_37n	1	known	nonsense	c.127	p.E43*	0.017	NULL	NULL	-	no_errors	DEFB132	HGNC	ENSG00000186458	116	0	0	57	28	32.94	-	-	-	T	239786	G	T	239786	4	4	815	1	0	0	0	0	0	1	0	0	4453	1175	41	2	133	2	DEFB132	20	239786	Nonsense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		239786	62785734	113	68791										
HM13	0	genome.wustl.edu	37	chr20	30135465	30135465	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aaagatcctgtcaaaatagtCcgatgccacgaacatacaga	7	10	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	20	30135465	30135465	C	T	SNP	HM13	ENST00000479096	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.168	-	-	-	no_errors	HM13	HGNC	ENSG00000101294	33	0	0	20	6	23.08	-	-	-	T	30135465	C	T	30135465	1	4	815	0	1	0	0	0	0	0	0	0	7268	870	30	2		2	HM13	20	30135465	RNA	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	29895679	30135465	32890055	114	68792										
ERGIC3	0	genome.wustl.edu	37	chr20	34130641	34130641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	gaacacaacctgttcaagcaAcgactagataaagatggcat	8	9	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	20	34130641	34130641	A	G	SNP	ERGIC3	ENST00000416206	human	ensembl	69_37n	1	novel	missense	c.314	p.N105S	0.996	NULL	pfam_DUF1692	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ERGIC3	HGNC	ENSG00000125991	164	0	0	67	22	24.72	-	-	-	G	34130641	A	G	34130641	3	3	815	1	0	0	0	0	1	0	0	0	5262	40	2	5	332	5	ERGIC3	20	34130641	Missense_Mutation	SNP	A	TCGA-E2-A1LG-01A-21D-A14K-09	3995176	34130641	28894879	115	68793										
KRTAP10-8	0	genome.wustl.edu	37	chr21	46032257	46032257	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ctggtctgtgccccagtgagCtgtgagcccagcccctgcca	12	16	1	2			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	21	46032257	46032257	C	T	SNP	KRTAP10-8	ENST00000334662	human	ensembl	69_37n	1	known	silent	c.240	p.S80	0.987	pfam_PMG	pfam_PMG	-	no_errors	KRTAP10-8	HGNC	ENSG00000187766	99	0	0	11	49	81.67	-	-	-	T	46032257	C	T	46032257	2	4	815	1	0	0	0	0	0	0	0	1	8568	796	28	4		4	KRTAP10-8	21	46032257	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09		46032257	2097638	116	68794										
DGCR6	0	genome.wustl.edu	37	chr22	18893927	18893927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	ccttggaggaggtggcggacGgtgcccggcagcaggagcga	20	10	0	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	22	18893927	18893927	G	A	SNP	DGCR6	ENST00000331444	human	ensembl	69_37n	1	known	missense	c.40	p.G14S	0.592	pfam_DGCR6	pfam_DGCR6	-	no_errors	DGCR6	HGNC	ENSG00000183628	12	0	0	24	9	27.27	-	-	-	A	18893927	G	A	18893927	3	1	815	1	0	0	0	0	1	0	0	0	4498	1116	39	1	42	1	DGCR6	22	18893927	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		18893927	32410639	117	68795										
MYH9	0	genome.wustl.edu	37	chr22	36690231	36690231	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tgcagctgcgcctccactttCttgcgcttgtgctccgagtc	10	15	1	0			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	22	36690231	36690231	C	T	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	silent	c.3744	p.K1248	1.000	pfam_Myosin_tail,superfamily_STAT_TF_coiled-coil	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	122	0	0	63	23	26.74	-	-	-	T	36690231	C	T	36690231	2	4	815	1	0	0	0	0	0	0	0	1	10114	912	32	2		2	MYH9	22	36690231	Silent	SNP	C	TCGA-E2-A1LG-01A-21D-A14K-09	17796304	36690231	14614335	118	68796										
OPHN1	0	genome.wustl.edu	37	chrX	67431962	67431962	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aaactcacattctgtaaactGagttggagctgttgtttgta	9	6	2	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	X	67431962	67431962	G	C	SNP	OPHN1	ENST00000355520	human	ensembl	69_37n	-1	known	silent	c.690	p.L230	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	132	0	0	78	27	25.47	-	-	-	C	67431962	G	C	67431962	2	2	815	1	0	0	0	0	0	0	0	1	10948	1277	45	2		2	OPHN1	23	67431962	Silent	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09		67431962	87838598	119	68797										
KIF4A	0	genome.wustl.edu	37	chrX	69606486	69606486	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	aggaccgtaagaggcaatatGagctgctgaaacttgaaaga	12	6	0	5			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	X	69606486	69606486	G	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	nonsense	c.2053	p.E685*	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	101	0	0	51	17	25	-	-	-	T	69606486	G	T	69606486	4	4	815	1	0	0	0	0	0	1	0	0	8355	1291	45	2	2123	2	KIF4A	23	69606486	Nonsense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	2174524	69606486	85664074	120	68798										
CHRDL1	0	genome.wustl.edu	37	chrX	110035316	110035316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.537190082644628	65	2.46465056338303e-25	4.18333333333333	5.44806201550388	3.29180327868852	0.498018771862886	1	49	tccaaatgcaagacacttacGttttacttgctctgttttgc	6	10	1	1			TCGA-E2-A1LG-01A-21D-A14K-09	TCGA-E2-A1LG-11A-42D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7cdbe0e8-f614-4f54-b864-fd6b39e8ef1c	583d989c-fa07-46f5-b463-6ce5a2744927	X	110035316	110035316	G	A	SNP	CHRDL1	ENST00000372042	human	ensembl	69_37n	-1	known	missense	c.94	p.H32Y	1.000	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938	134	0	0	55	35	38.89	-	-	-	A	110035316	G	A	110035316	3	1	815	1	0	0	0	0	1	0	0	0	3402	1159	40	1	1326	1	CHRDL1	23	110035316	Missense_Mutation	SNP	G	TCGA-E2-A1LG-01A-21D-A14K-09	40428830	110035316	45235244	121	68799										
MYOM3	0	genome.wustl.edu	37	chr1	24407909	24407909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cccagttggcagcccgggcaCggaactcatagaagtggcct	13	13	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	24407909	24407909	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.2321	p.R774H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	12	0	0	12	4	25	-	-	-	T	24407909	C	T	24407909	3	4	816	1	0	0	0	0	1	0	0	0	10165	536	19	1	2071	1	MYOM3	1	24407909	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		24407909	224842712	1	68800										
GPATCH3	0	genome.wustl.edu	37	chr1	27226625	27226625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ccccttaccgagatgacgcaGcagcaggtgcgggtctggat	14	12	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	27226625	27226625	G	C	SNP	GPATCH3	ENST00000361720	human	ensembl	69_37n	-1	known	missense	c.309	p.C103W	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746	24	0	0	16	4	20	-	-	-	C	27226625	G	C	27226625	3	2	816	1	0	0	0	0	1	0	0	0	6642	963	34	4	1296	4	GPATCH3	1	27226625	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	2818716	27226625	222023996	2	68801										
TAL1	0	genome.wustl.edu	37	chr1	47685653	47685653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgggtgccctcctcctcctgGtcattgagcagcttggccaa	11	14	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	47685653	47685653	G	C	SNP	TAL1	ENST00000371883	human	ensembl	69_37n	-1	known	missense	c.741	p.D247E	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TAL1	HGNC	ENSG00000162367	14	0	0	4	4	44.44	-	-	-	C	47685653	G	C	47685653	3	2	816	1	0	0	0	0	1	0	0	0	15633	1252	44	4	264	4	TAL1	1	47685653	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	20459028	47685653	201564968	3	68802										
USP24	0	genome.wustl.edu	37	chr1	55555340	55555340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agaactaataaaatattcaaCtaaccactgacaagcatcaa	3	9	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	55555340	55555340	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.6628	p.V2210I	0.999	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	62	0	0	57	8	12.31	-	-	-	T	55555340	C	T	55555340	3	4	816	1	0	0	0	0	1	0	0	0	17152	565	20	4	1290	4	USP24	1	55555340	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7869687	55555340	193695281	4	68803										
INADL	0	genome.wustl.edu	37	chr1	62503648	62503648	+	Splice_Site	SNP	G	G	T													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gcctattttaacacttcacaGaaacgaggatgcagtcaatc							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	62503648	62503648	G	T	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	splice_site	c.3960-1	e29-1	1.000	-	-	-	no_errors	INADL	HGNC	ENSG00000132849	79	0	0	64	20	23.81	-	-	-	T	62503648	G	T	62503648	5	4	816	1	0	0	0	0	0	0	1	0	7785	956	33	2	4073	2	INADL	1	62503648	Splice_Site	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	6948308	62503648	186746973	5	68804	493	2								
INADL	0	genome.wustl.edu	37	chr1	62503649	62503649	+	Missense_Mutation	SNP	A	A	C													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cctattttaacacttcacagAaacgaggatgcagtcaatca							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	62503649	62503649	A	C	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.3960	p.R1320S	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	77	0	0	65	21	24.42	-	-	-	C	62503649	A	C	62503649	3	2	816	1	0	0	0	0	1	0	0	0	7785	260	9	5	4074	5	INADL	1	62503649	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	1	62503649	186746972	6	68805	493	2								
SGIP1	0	genome.wustl.edu	37	chr1	67206389	67206389	+	Missense_Mutation	SNP	G	G	T													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aagattcctgatatctctcaGaagtcagaaaatggaggtaa							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	67206389	67206389	G	T	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.2376	p.Q792H	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	40	0	0	55	9	14.06	-	-	-	T	67206389	G	T	67206389	3	4	816	1	0	0	0	0	1	0	0	0	14294	933	33	2	2373	2	SGIP1	1	67206389	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	4702740	67206389	182044232	7	68806	494	2								
SGIP1	0	genome.wustl.edu	37	chr1	67206390	67206390	+	Nonsense_Mutation	SNP	A	A	T													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agattcctgatatctctcagAagtcagaaaatggaggtaat							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	67206390	67206390	A	T	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	nonsense	c.2377	p.K793*	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	38	0	0	56	9	13.85	-	-	-	T	67206390	A	T	67206390	4	4	816	1	0	0	0	0	0	1	0	0	14294	247	9	5	2374	5	SGIP1	1	67206390	Nonsense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	1	67206390	182044231	8	68807	494	2								
GBP4	0	genome.wustl.edu	37	chr1	89656943	89656943	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttgggacaaaaaaagactcaCgctttccagtgacaatgatt	8	8	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	89656943	89656943	C	T	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	splice_site	c.916+1	e6+1	0.840	-	-	-	no_errors	GBP4	HGNC	ENSG00000162654	58	0	0	74	15	16.85	-	-	-	T	89656943	C	T	89656943	5	4	816	1	0	0	0	0	0	0	1	0	6326	550	19	1	1029	1	GBP4	1	89656943	Splice_Site	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	22450553	89656943	159593678	9	68808										
AHCYL1	0	genome.wustl.edu	37	chr1	110559298	110559298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgtttccacagcctgaagagGaccacagatgtgatgtttgg	12	8	0	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	110559298	110559298	G	T	SNP	AHCYL1	ENST00000369799	human	ensembl	69_37n	1	known	missense	c.909	p.R303S	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710	262	0	0	255	51	16.67	-	-	-	T	110559298	G	T	110559298	3	4	816	1	0	0	0	0	1	0	0	0	410	1165	41	2	943	2	AHCYL1	1	110559298	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	20902355	110559298	138691323	10	68809										
CD84	0	genome.wustl.edu	37	chr1	160523827	160523827	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tctcccaggggactccaattGtatgtcacattcttttcttc	6	12	4	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	160523827	160523827	G	T	SNP	CD84	ENST00000311224	human	ensembl	69_37n	-1	known	nonsense	c.498	p.Y166*	0.014	smart_Ig_sub,pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD84	HGNC	ENSG00000066294	84	0	0	107	69	39.2	-	-	-	T	160523827	G	T	160523827	4	4	816	1	0	0	0	0	0	1	0	0	3071	1372	48	4	563	4	CD84	1	160523827	Nonsense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	49964529	160523827	88726794	11	68810										
ITLN2	0	genome.wustl.edu	37	chr1	160922453	160922453	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttgatttctttgcagcttctAggcagggaagaaaaggagaa	12	5	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	160922453	160922453	A	G	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	silent	c.150	p.P50	0.028	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	86	0	0	128	28	17.95	-	-	-	G	160922453	A	G	160922453	2	3	816	1	0	0	0	0	0	0	0	1	7965	407	15	5		5	ITLN2	1	160922453	Silent	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	398626	160922453	88328168	12	68811										
DUSP27	0	genome.wustl.edu	37	chr1	167095074	167095074	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcagccggtcagcagtgctgGtggtcgcctacctgatgatc	13	12	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	167095074	167095074	G	C	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.706	p.V236L	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	35	0	0	45	7	13.46	-	-	-	C	167095074	G	C	167095074	3	2	816	1	0	0	0	0	1	0	0	0	4859	1261	44	4	724	4	DUSP27	1	167095074	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	6172621	167095074	82155547	13	68812										
LYST	0	genome.wustl.edu	37	chr1	235907399	235907399	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcggtctggaaaactgaggtCttgctttgagttacattttc	10	7	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	235907399	235907399	C	G	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.8031	p.K2677N	0.926	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	71	0	0	88	14	13.73	-	-	-	G	235907399	C	G	235907399	3	3	816	1	0	0	0	0	1	0	0	0	9195	912	32	2	3470	2	LYST	1	235907399	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	68812325	235907399	13343222	14	68813										
OR2L8	0	genome.wustl.edu	37	chr1	248113016	248113016	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cctcaccccaatgctcaaccCcatcatctatagcctgagga	5	17	4	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	1	248113016	248113016	C	A	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	missense	c.857	p.P286H	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	56	0	0	55	33	37.5	-	-	-	A	248113016	C	A	248113016	3	1	816	1	0	0	0	0	1	0	0	0	11082	623	22	4	859	4	OR2L8	1	248113016	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	12205617	248113016	1137605	15	68814										
ROCK2	0	genome.wustl.edu	37	chr2	11338833	11338833	+	Frame_Shift_Del	DEL	T	T	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gaacatctttcaatttgttaTttaattcttctttctcattt							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	11338833	11338833	T	-	DEL	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	frame_shift_del	c.2978	p.N993fs	1.000	pfam_Rho-bd,pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	82	0	0	119	16	11.85	-	-	-	-	11338833	T	-	11338833	7	5	816	1	0	1	0	1	0	0	0	0	13604	1493	52	0	1228	0	ROCK2	2	11338833	Frame_Shift_Del	DEL	T	TCGA-E2-A1LH-01A-11D-A14G-09		11338833	231860540	16	68815										
SLC4A5	0	genome.wustl.edu	37	chr2	74466568	74466568	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gcgccaggtctgggataaacTtgcaggaattcccaagcagg	13	10	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	74466568	74466568	T	G	SNP	SLC4A5	ENST00000357822	human	ensembl	69_37n	-1	known	missense	c.2213	p.K738T	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	29	0	0	33	5	13.16	-	-	-	G	74466568	T	G	74466568	3	3	816	1	0	0	0	0	1	0	0	0	14746	1609	56	5	1244	5	SLC4A5	2	74466568	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	63127735	74466568	168732805	17	68816										
DDX18	0	genome.wustl.edu	37	chr2	118582195	118582195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cccaaactcgaaaagttgaaGacctggcaaggatttctctg	9	10	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	118582195	118582195	G	C	SNP	DDX18	ENST00000263239	human	ensembl	69_37n	1	known	missense	c.1117	p.D373H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205	102	0	0	109	15	12.1	-	-	-	C	118582195	G	C	118582195	3	2	816	1	0	0	0	0	1	0	0	0	4376	942	33	2	1147	2	DDX18	2	118582195	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	44115627	118582195	124617178	18	68817										
TTN	0	genome.wustl.edu	37	chr2	179477137	179477137	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	actgtgcacttggtgtccttGacagtggtatccactgtttg	11	9	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	179477137	179477137	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.42411	p.V14137	0.957	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	81	0	0	67	15	18.29	-	-	-	C	179477137	G	C	179477137	2	2	816	1	0	0	0	0	0	0	0	1	16832	1277	45	2		2	TTN	2	179477137	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	60894942	179477137	63722236	19	68818										
NIF3L1	0	genome.wustl.edu	37	chr2	201764124	201764124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gaagagtctcaagtcaaagtCgtggccctgtgtgctggttc	13	9	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	201764124	201764124	C	T	SNP	NIF3L1	ENST00000409588	human	ensembl	69_37n	1	novel	missense	c.743	p.S248L	0.001	pirsf_UCP037490_NIF3_euk	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk	-	no_errors	NIF3L1	HGNC	ENSG00000196290	133	0	0	247	30	10.83	-	-	-	T	201764124	C	T	201764124	3	4	816	1	0	0	0	0	1	0	0	0	10488	893	31	1	900	1	NIF3L1	2	201764124	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	22286987	201764124	41435249	20	68819										
SPHKAP	0	genome.wustl.edu	37	chr2	228846465	228846465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	caagagccagtcaaagagacTcagtctcccatccttctgct	7	14	4	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	228846465	228846465	T	A	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.5071	p.S1691C	1.000	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	26	0	0	42	7	14.29	-	-	-	A	228846465	T	A	228846465	3	1	816	1	0	0	0	0	1	0	0	0	15139	1551	54	5	35	5	SPHKAP	2	228846465	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	27082341	228846465	14352908	21	68820										
UGT1A5	0	genome.wustl.edu	37	chr2	234622270	234622270	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	atgacattcctgcaaagggtCaagaacatgctctaccctct	7	12	3	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	2	234622270	234622270	C	A	SNP	UGT1A5	ENST00000373414	human	ensembl	69_37n	1	known	silent	c.633	p.V211	0.978	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A5	HGNC	ENSG00000240224	145	0	0	166	28	14.43	-	-	-	A	234622270	C	A	234622270	2	1	816	1	0	0	0	0	0	0	0	1	17045	813	29	2		2	UGT1A5	2	234622270	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	5775805	234622270	8577103	22	68821										
CNTN4	0	genome.wustl.edu	37	chr3	3080621	3080621	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttgtctccttgtgcagtcccCgaagtcacaccagcgaatgt	9	13	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	3080621	3080621	C	A	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	1	known	silent	c.2097	p.P699	0.355	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	50	0	0	68	21	23.6	-	-	-	A	3080621	C	A	3080621	2	1	816	1	0	0	0	0	0	0	0	1	3673	639	23	3		3	CNTN4	3	3080621	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		3080621	194941809	23	68822										
FANCD2	0	genome.wustl.edu	37	chr3	10128882	10128882	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gtttccagtgtgctctttatCtcatcagacttttgatggtt	8	8	3	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	10128882	10128882	C	G	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	1	known	missense	c.3400	p.L1134V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	92	0	0	128	35	21.47	-	-	-	G	10128882	C	G	10128882	3	3	816	1	0	0	0	0	1	0	0	0	5711	913	32	2	3530	2	FANCD2	3	10128882	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7048261	10128882	187893548	24	68823										
COLQ	0	genome.wustl.edu	37	chr3	15515753	15515753	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	accttttctcctttgggaccCaggtcacccttttcacctct	5	16	4	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	15515753	15515753	C	G	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	silent	c.582	p.L194	0.985	NULL	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	113	0	0	77	46	37.4	-	-	-	G	15515753	C	G	15515753	2	3	816	1	0	0	0	0	0	0	0	1	3743	581	21	4		4	COLQ	3	15515753	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	5386871	15515753	182506677	25	68824										
SCN11A	0	genome.wustl.edu	37	chr3	38951681	38951681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttttggtgtgcttacattcaTattgtatggaacaggcacta	9	6	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	38951681	38951681	T	A	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	missense	c.977	p.Y326F	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	59	0	0	64	8	11.11	-	-	-	A	38951681	T	A	38951681	3	1	816	1	0	0	0	0	1	0	0	0	14001	1406	49	5	4474	5	SCN11A	3	38951681	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	23435928	38951681	159070749	26	68825										
ULK4	0	genome.wustl.edu	37	chr3	41757046	41757046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tccagaaacattagccaaggAgttaagaatgtcacctgtga	9	8	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	41757046	41757046	A	C	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	missense	c.2470	p.S824A	0.740	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	45	0	0	31	7	18.42	-	-	-	C	41757046	A	C	41757046	3	2	816	1	0	0	0	0	1	0	0	0	17075	304	11	5	1413	5	ULK4	3	41757046	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	2805365	41757046	156265384	27	68826										
PTPN23	0	genome.wustl.edu	37	chr3	47452898	47452898	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agctgcaagatgcgcaggaaCatgatgcccgaggccgttcc	13	12	0	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	47452898	47452898	C	G	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.3610	p.H1204D	0.844	smart_Tyr_Pase_rcpt/non-rcpt	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	15	0	0	16	7	30.43	-	-	-	G	47452898	C	G	47452898	3	3	816	1	0	0	0	0	1	0	0	0	12871	478	17	4	3688	4	PTPN23	3	47452898	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	5695852	47452898	150569532	28	68827										
PRICKLE2	0	genome.wustl.edu	37	chr3	64142909	64142909	+	Frame_Shift_Del	DEL	G	G	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	acagtatatcttcccatcttGgtaaaagtagatcagatcca							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	64142909	64142909	G	-	DEL	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	frame_shift_del	c.529	p.Q177fs	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	22	0	0	27	4	12.12	-	-	-	-	64142909	G	-	64142909	7	5	816	1	0	1	0	1	0	0	0	0	12568	1357	47	0	2021	0	PRICKLE2	3	64142909	Frame_Shift_Del	DEL	G	TCGA-E2-A1LH-01A-11D-A14G-09	16690011	64142909	133879521	29	68828										
OR5K1	0	genome.wustl.edu	37	chr3	98189042	98189042	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcttctcaggttcagttcaaGtctttaccataggtagtgtc	8	9	5	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	98189042	98189042	G	C	SNP	OR5K1	ENST00000332650	human	ensembl	69_37n	1	known	missense	c.622	p.V208L	0.890	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K1	HGNC	ENSG00000232382	122	0	0	162	41	20.2	-	-	-	C	98189042	G	C	98189042	3	2	816	1	0	0	0	0	1	0	0	0	11239	1029	36	4	624	4	OR5K1	3	98189042	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	34046133	98189042	99833388	30	68829										
WDR52	0	genome.wustl.edu	37	chr3	113119482	113119482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gaaggagaagaggcattctgGgtcctgggtctgagaataga	16	5	2	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	113119482	113119482	G	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.1384	p.P462T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	35	0	0	36	21	36.84	-	-	-	T	113119482	G	T	113119482	3	4	816	1	0	0	0	0	1	0	0	0	17401	1232	43	4	4291	4	WDR52	3	113119482	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	14930440	113119482	84902948	31	68830										
SLITRK3	0	genome.wustl.edu	37	chr3	164905805	164905805	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tctgtgaagccctttccagcCgagaagagaagggtttcttt	11	9	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	164905805	164905805	C	G	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	silent	c.2814	p.S938	0.984	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	71	0	0	82	18	18	-	-	-	G	164905805	C	G	164905805	2	3	816	1	0	0	0	0	0	0	0	1	14833	639	23	3		3	SLITRK3	3	164905805	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	51786323	164905805	33116625	32	68831										
SERPINI2	0	genome.wustl.edu	37	chr3	167184946	167184946	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgaaaaaattccttgttgccAtggagatactgttctttcac	7	8	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	167184946	167184946	A	G	SNP	SERPINI2	ENST00000264677	human	ensembl	69_37n	-1	known	silent	c.375	p.H125	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204	100	0	0	165	21	11.29	-	-	-	G	167184946	A	G	167184946	2	3	816	1	0	0	0	0	0	0	0	1	14207	214	8	5		5	SERPINI2	3	167184946	Silent	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	2279141	167184946	30837484	33	68832										
SLC7A14	0	genome.wustl.edu	37	chr3	170201192	170201192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgactgtcagtcctgcaacCgacccaatggccactacgaa	8	15	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	170201192	170201192	C	T	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	silent	c.1026	p.S342	0.000	pfam_AA-permease_dom	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	29	0	0	38	6	13.64	-	-	-	T	170201192	C	T	170201192	2	4	816	1	0	0	0	0	0	0	0	1	14785	639	23	1		1	SLC7A14	3	170201192	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	3016246	170201192	27821238	34	68833										
ATP13A4	0	genome.wustl.edu	37	chr3	193156267	193156267	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aggaagtgcctacttacttgAtaaggtgaggtacgcactca	11	8	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	3	193156267	193156267	A	C	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	missense	c.2669	p.I890S	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	62	0	0	47	12	20.34	-	-	-	C	193156267	A	C	193156267	3	2	816	1	0	0	0	0	1	0	0	0	1130	333	12	5	953	5	ATP13A4	3	193156267	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	22955075	193156267	4866163	35	68834										
CRIPAK	0	genome.wustl.edu	37	chr4	1388613	1388613	+	Frame_Shift_Del	DEL	C	C	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	acacgtgcccatgtggagtgCccgcctgctcacgtgcccat							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	4	1388613	1388613	C	-	DEL	CRIPAK	ENST00000324803	human	ensembl	69_37n	1	known	frame_shift_del	c.314	p.R106fs	0.007	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	25	0	0	21	6	21.43	-	-	-	-	1388613	C	-	1388613	7	5	816	1	0	1	0	1	0	0	0	0	3907	739	26	0	316	0	CRIPAK	4	1388613	Frame_Shift_Del	DEL	C	TCGA-E2-A1LH-01A-11D-A14G-09		1388613	189765663	36	68835										
NFKB1	0	genome.wustl.edu	37	chr4	103459076	103459076	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tggtggactacctggtgcctCtagtgaaaagaacaagaagt	12	7	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	4	103459076	103459076	C	G	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	1	known	missense	c.221	p.S74C	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	92	0	0	58	13	18.31	-	-	-	G	103459076	C	G	103459076	3	3	816	1	0	0	0	0	1	0	0	0	10447	913	32	2	235	2	NFKB1	4	103459076	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	102070463	103459076	87695200	37	68836										
PCDH10	0	genome.wustl.edu	37	chr4	134073838	134073838	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cccttcgcggagtacggacaCtgagcacaacccctgcgggg	13	15	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	4	134073838	134073838	C	G	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	missense	c.2543	p.T848S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	50	0	0	51	9	15	-	-	-	G	134073838	C	G	134073838	3	3	816	1	0	0	0	0	1	0	0	0	11580	565	20	4	2545	4	PCDH10	4	134073838	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	30614762	134073838	57080438	38	68837										
ZDHHC11	0	genome.wustl.edu	37	chr5	840342	840342	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tacttcaagcacctggcaccActcctgcaggtctcggcgtg	10	15	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	840342	840342	A	G	SNP	ZDHHC11	ENST00000511539	human	ensembl	69_37n	-1	putative	missense	c.413	p.V138A	0.000	NULL	NULL	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	8	0	0	4	6	60	-	-	-	G	840342	A	G	840342	3	3	816	1	0	0	0	0	1	0	0	0	17697	174	6	5		5	ZDHHC11	5	840342	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09		840342	180074918	39	68838										
SLC6A19	0	genome.wustl.edu	37	chr5	1210685	1210685	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gagcgactgcccgctcaacgAgaaccagacaggtgagtcct	12	13	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	1210685	1210685	A	G	SNP	SLC6A19	ENST00000304460	human	ensembl	69_37n	1	known	missense	c.470	p.E157G	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358	14	0	0	27	7	20.59	-	-	-	G	1210685	A	G	1210685	3	3	816	1	0	0	0	0	1	0	0	0	14771	304	11	5	480	5	SLC6A19	5	1210685	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	370343	1210685	179704575	40	68839										
RANBP3L	0	genome.wustl.edu	37	chr5	36268305	36268305	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tctttattacctggcccagaAtgggggaaggttgggaggtt	15	6	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	36268305	36268305	A	T	SNP	RANBP3L	ENST00000502994	human	ensembl	69_37n	-1	novel	missense	c.333	p.H111Q	0.348	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3L	HGNC	ENSG00000164188	76	0	0	75	11	12.79	-	-	-	T	36268305	A	T	36268305	3	4	816	1	0	0	0	0	1	0	0	0	13113	98	4	5	1183	5	RANBP3L	5	36268305	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	35057620	36268305	144646955	41	68840										
MAST4	0	genome.wustl.edu	37	chr5	66432390	66432390	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aacaacttttcttccttctaGatgagatcaactggcctgag	7	10	3	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	66432390	66432390	G	A	SNP	MAST4	ENST00000404260	human	ensembl	69_37n	1	known	splice_site	c.2402-1	e19-1	1.000	-	-	-	no_errors	MAST4	HGNC	ENSG00000069020	66	0	0	47	8	14.29	-	-	-	A	66432390	G	A	66432390	5	1	816	1	0	0	0	0	0	0	1	0	9398	956	33	2	2596	2	MAST4	5	66432390	Splice_Site	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	30164085	66432390	114482870	42	68841										
CCDC125	0	genome.wustl.edu	37	chr5	68595848	68595848	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgcttacctacctcaagaccTgaagcctctgcaaagccact	6	15	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	68595848	68595848	T	G	SNP	CCDC125	ENST00000396496	human	ensembl	69_37n	-1	known	silent	c.807	p.S269	1.000	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	116	0	0	95	43	30.71	-	-	-	G	68595848	T	G	68595848	2	3	816	1	0	0	0	0	0	0	0	1	2786	1567	55	5		5	CCDC125	5	68595848	Silent	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	2163458	68595848	112319412	43	68842										
NR2F1	0	genome.wustl.edu	37	chr5	92923685	92923685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gccagtacgcactcaccaacGgggaccccctcaacggccac	9	19	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	92923685	92923685	G	A	SNP	NR2F1	ENST00000327111	human	ensembl	69_37n	1	known	missense	c.526	p.G176R	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2F1	HGNC	ENSG00000175745	18	0	0	14	10	41.67	-	-	-	A	92923685	G	A	92923685	3	1	816	1	0	0	0	0	1	0	0	0	10700	1116	39	1	532	1	NR2F1	5	92923685	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	24327837	92923685	87991575	44	68843										
GRAMD3	0	genome.wustl.edu	37	chr5	125759303	125759303	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tccagacacggccccgatgaCtgaactacagcaagatgtgg	11	12	0	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	125759303	125759303	C	G	SNP	GRAMD3	ENST00000285689	human	ensembl	69_37n	1	known	missense	c.5	p.T2S	0.990	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324	38	0	0	27	5	15.62	-	-	-	G	125759303	C	G	125759303	3	3	816	1	0	0	0	0	1	0	0	0	6802	565	20	4	139	4	GRAMD3	5	125759303	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	32835618	125759303	55155957	45	68844										
SPINK5	0	genome.wustl.edu	37	chr5	147469120	147469120	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttggatgcacaagggaaaatGatcctgttcttggtcctgat	11	7	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	5	147469120	147469120	G	C	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	missense	c.538	p.D180H	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	119	0	0	126	27	17.65	-	-	-	C	147469120	G	C	147469120	3	2	816	1	0	0	0	0	1	0	0	0	15153	1290	45	2	564	2	SPINK5	5	147469120	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	21709817	147469120	33446140	46	68845										
ZKSCAN4	0	genome.wustl.edu	37	chr6	28219418	28219418	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cgctctctggatgctgctccCgcacccagctctgcagattc	9	17	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	28219418	28219418	C	A	SNP	ZKSCAN4	ENST00000377294	human	ensembl	69_37n	-1	known	missense	c.341	p.R114L	0.995	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626	44	0	0	47	11	18.97	-	-	-	A	28219418	C	A	28219418	3	1	816	1	0	0	0	0	1	0	0	0	17785	652	23	3	1316	3	ZKSCAN4	6	28219418	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		28219418	142895649	47	68846										
FGD2	0	genome.wustl.edu	37	chr6	36995284	36995285	+	Frame_Shift_Ins	INS	-	-	C													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gacaagtggggcaagagcggINScccccggggctggtgtgtga							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	36995284	36995285	-	C	INS	FGD2	ENST00000274963	human	ensembl	69_37n	1	known	frame_shift_ins	c.1685_1686	p.R564fs	0.734:0.736	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	32	0	0	29	12	29.27	-	-	-	C	36995285	-	C	36995284	7	5	816	1	0	1	1	0	0	0	0	0	5879	1203	42	0	1743	0	FGD2	6	36995284	Frame_Shift_Ins	INS	-	TCGA-E2-A1LH-01A-11D-A14G-09	8775866	36995284	134119783	48	68847										
MEA1	0	genome.wustl.edu	37	chr6	42980860	42980860	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcctccaccctacctggattCgatcctggatgtcagcaact	7	15	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	42980860	42980860	C	G	SNP	MEA1	ENST00000244711	human	ensembl	69_37n	-1	known	missense	c.296	p.R99P	0.997	pfam_MEA1	pfam_MEA1	-	no_errors	MEA1	HGNC	ENSG00000124733	60	0	0	60	36	37.5	-	-	-	G	42980860	C	G	42980860	3	3	816	1	0	0	0	0	1	0	0	0	9491	884	31	3	273	3	MEA1	6	42980860	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	5985576	42980860	128134207	49	68848										
KLHDC3	0	genome.wustl.edu	37	chr6	42986864	42986864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aaggcctgggagatgaatttGaccttatagatcattctgac	10	7	2	5			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	42986864	42986864	G	C	SNP	KLHDC3	ENST00000326974	human	ensembl	69_37n	1	known	missense	c.964	p.D322H	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702	115	0	0	186	23	11	-	-	-	C	42986864	G	C	42986864	3	2	816	1	0	0	0	0	1	0	0	0	8410	1290	45	2	994	2	KLHDC3	6	42986864	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	6004	42986864	128128203	50	68849										
TTBK1	0	genome.wustl.edu	37	chr6	43223320	43223320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gccacgacgacctgtggtccCtcttctacatgctggtggag	12	13	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	43223320	43223320	C	A	SNP	TTBK1	ENST00000259750	human	ensembl	69_37n	1	known	missense	c.673	p.L225I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216	22	0	0	53	12	18.46	-	-	-	A	43223320	C	A	43223320	3	1	816	1	0	0	0	0	1	0	0	0	16773	681	24	4	699	4	TTBK1	6	43223320	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	236456	43223320	127891747	51	68850										
GPR111	0	genome.wustl.edu	37	chr6	47646792	47646792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ccagacactcagggaaatatGgggttttcatgcaggcaaaa	11	8	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	47646792	47646792	G	A	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	1	known	missense	c.393	p.M131I	0.321	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	70	0	0	85	21	19.81	-	-	-	A	47646792	G	A	47646792	3	1	816	1	0	0	0	0	1	0	0	0	6678	1348	47	4	199	4	GPR111	6	47646792	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	4423472	47646792	123468275	52	68851										
DOPEY1	0	genome.wustl.edu	37	chr6	83841993	83841993	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	caattacataacttagttccTtcttctagcatctgtgagga	6	9	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	83841993	83841993	T	G	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	silent	c.2715	p.P905	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	50	0	0	49	24	32.88	-	-	-	G	83841993	T	G	83841993	2	3	816	1	0	0	0	0	0	0	0	1	4742	1596	56	5		5	DOPEY1	6	83841993	Silent	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	36195201	83841993	87273074	53	68852										
KIAA1009	0	genome.wustl.edu	37	chr6	84862461	84862461	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gggaaggagttagcatttccTttacttgagtgcaaaacatc	10	7	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	84862461	84862461	T	G	SNP	KIAA1009	ENST00000403245	human	ensembl	69_37n	-1	known	missense	c.3432	p.K1144N	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	78	0	0	84	28	25	-	-	-	G	84862461	T	G	84862461	3	3	816	1	0	0	0	0	1	0	0	0	8255	1606	56	5	799	5	KIAA1009	6	84862461	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	1020468	84862461	86252606	54	68853										
PCMT1	0	genome.wustl.edu	37	chr6	150070927	150070927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	acagcggcagctacagcgggGacgcgagcggggcggtgacg	20	11	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	6	150070927	150070927	G	A	SNP	PCMT1	ENST00000367384	human	ensembl	69_37n	1	known	missense	c.64	p.D22N	1.000	NULL	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265	17	0	0	22	5	18.52	-	-	-	A	150070927	G	A	150070927	3	1	816	1	0	0	0	0	1	0	0	0	11658	1174	41	2	66	2	PCMT1	6	150070927	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	65208466	150070927	21044140	55	68854										
KDELR2	0	genome.wustl.edu	37	chr7	6509386	6509386	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gagcaggcaaggtagataacCtacaaataaaagaaaaaaca	8	6	0	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	6509386	6509386	C	G	SNP	KDELR2	ENST00000258739	human	ensembl	69_37n	-1	known	splice_site	c.193-1	e3-1	1.000	-	-	-	no_errors	KDELR2	HGNC	ENSG00000136240	37	0	0	32	9	21.95	-	-	-	G	6509386	C	G	6509386	5	3	816	1	0	0	0	0	0	0	1	0	8174	695	24	4	633	4	KDELR2	7	6509386	Splice_Site	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		6509386	152629277	56	68855										
ETV1	0	genome.wustl.edu	37	chr7	13949273	13949273	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctaccatcgaatttttctggGacaacacaggtgtcatcata	7	10	3	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	13949273	13949273	G	T	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	silent	c.924	p.V308	0.983	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	62	0	0	52	12	18.75	-	-	-	T	13949273	G	T	13949273	2	4	816	1	0	0	0	0	0	0	0	1	5314	1161	41	2		2	ETV1	7	13949273	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	7439887	13949273	145189390	57	68856										
DNAH11	0	genome.wustl.edu	37	chr7	21639618	21639618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agattgtgtttaaaccttccCtagacagagaggctggggat	12	7	0	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	21639618	21639618	C	G	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.2881	p.L961V	0.575	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	62	0	0	50	12	19.35	-	-	-	G	21639618	C	G	21639618	3	3	816	1	0	0	0	0	1	0	0	0	4635	680	24	4	2939	4	DNAH11	7	21639618	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7690345	21639618	137499045	58	68857										
BBS9	0	genome.wustl.edu	37	chr7	33573686	33573686	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	acatacccaaagacacaagcCaactgaagaaacatatcacc	4	13	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	33573686	33573686	C	G	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.2419	p.Q807E	0.146	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	51	0	0	58	16	21.62	-	-	-	G	33573686	C	G	33573686	3	3	816	1	0	0	0	0	1	0	0	0	1346	595	21	4	2497	4	BBS9	7	33573686	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	11934068	33573686	125564977	59	68858										
NSUN5	0	genome.wustl.edu	37	chr7	72718027	72718027	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gctcctccagctgtctgctcGgcatacctaaggaaaagagt	10	12	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	72718027	72718027	G	C	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	missense	c.941	p.P314R	0.000	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	17	0	0	11	7	38.89	-	-	-	C	72718027	G	C	72718027	3	2	816	1	0	0	0	0	1	0	0	0	10754	1116	39	3	492	3	NSUN5	7	72718027	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	39144341	72718027	86420636	60	68859										
MLL5	0	genome.wustl.edu	37	chr7	104752795	104752795	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aggacaatcttcagcaacatAcagtcagtttaaccaacaaa	5	10	3	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	104752795	104752795	A	G	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.4592	p.Y1531C	0.990	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	129	0	0	125	22	14.97	-	-	-	G	104752795	A	G	104752795	3	3	816	1	0	0	0	0	1	0	0	0	9695	391	14	5	4690	5	MLL5	7	104752795	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	32034768	104752795	54385868	61	68860										
AKR1D1	0	genome.wustl.edu	37	chr7	137776547	137776547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	atcatgtcccagagatggtcCgcccaaccctggagaggaca	11	13	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	137776547	137776547	C	T	SNP	AKR1D1	ENST00000242375	human	ensembl	69_37n	1	known	missense	c.295	p.R99C	0.006	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1D1	HGNC	ENSG00000122787	64	0	0	108	15	12.2	-	-	-	T	137776547	C	T	137776547	3	4	816	1	0	0	0	0	1	0	0	0	473	652	23	1	305	1	AKR1D1	7	137776547	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	33023752	137776547	21362116	62	68861										
SLC4A2	0	genome.wustl.edu	37	chr7	150773264	150773264	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cgtatcttcaccgaccgagaGatgaaatgtgtaagccctcc	9	12	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	150773264	150773264	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	silent	c.3636	p.E1212	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	25	0	0	38	7	15.56	-	-	-	A	150773264	G	A	150773264	2	1	816	1	0	0	0	0	0	0	0	1	14743	933	33	2		2	SLC4A2	7	150773264	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	12996717	150773264	8365399	63	68862										
XRCC2	0	genome.wustl.edu	37	chr7	152346029	152346029	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	atagtcatttacaagcttctCtaagcactgagaacatttcc	5	10	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	7	152346029	152346029	C	T	SNP	XRCC2	ENST00000359321	human	ensembl	69_37n	-1	known	missense	c.541	p.E181K	0.984	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584	36	0	0	41	7	14.58	-	-	-	T	152346029	C	T	152346029	3	4	816	1	0	0	0	0	1	0	0	0	17550	922	32	2	305	2	XRCC2	7	152346029	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	1572765	152346029	6792634	64	68863										
MYOM2	0	genome.wustl.edu	37	chr8	2041867	2041867	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aggcggtcaatgctgtggggAtgagtgaaaattcccaggaa	15	6	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	2041867	2041867	A	T	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	missense	c.2074	p.M692L	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	47	0	0	40	17	29.82	-	-	-	T	2041867	A	T	2041867	3	4	816	1	0	0	0	0	1	0	0	0	10164	333	12	5	2136	5	MYOM2	8	2041867	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09		2041867	144322155	65	68864										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37730075	37730075	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgactctccaagtctctgtCtcctcctgctgcaagctccc	6	18	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	37730075	37730075	C	G	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	missense	c.2245	p.D749H	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	53	0	0	51	9	15	-	-	-	G	37730075	C	G	37730075	3	3	816	1	0	0	0	0	1	0	0	0	12976	913	32	2	1618	2	RAB11FIP1	8	37730075	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	35688208	37730075	108633947	66	68865										
PLAT	0	genome.wustl.edu	37	chr8	42045512	42045512	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgctggcaggtgcccccgttGaaacaccttggctcgctgca	12	14	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	42045512	42045512	G	T	SNP	PLAT	ENST00000220809	human	ensembl	69_37n	-1	known	missense	c.276	p.F92L	1.000	pfam_EGF-like_dom,pfscan_EG-like_dom	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	37	0	0	27	5	15.62	-	-	-	T	42045512	G	T	42045512	3	4	816	1	0	0	0	0	1	0	0	0	12095	1281	45	2	1452	2	PLAT	8	42045512	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	4315437	42045512	104318510	67	68866										
RB1CC1	0	genome.wustl.edu	37	chr8	53586778	53586778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aacattctctgtaactatgtCtggttaggcactccaacagt	7	10	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	53586778	53586778	C	T	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.629	p.R210K	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	76	0	0	162	19	10.5	-	-	-	T	53586778	C	T	53586778	3	4	816	1	0	0	0	0	1	0	0	0	13182	913	32	2	4227	2	RB1CC1	8	53586778	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	11541266	53586778	92777244	68	68867										
POP1	0	genome.wustl.edu	37	chr8	99158821	99158821	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gagaaagttagacagctgctTctggagggtgtgcctgtgga	16	6	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	99158821	99158821	T	A	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	silent	c.1620	p.L540	0.966	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	101	0	0	199	30	13.1	-	-	-	A	99158821	T	A	99158821	2	1	816	1	0	0	0	0	0	0	0	1	12325	1770	62	5		5	POP1	8	99158821	Silent	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	45572043	99158821	47205201	69	68868										
UBR5	0	genome.wustl.edu	37	chr8	103282400	103282400	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tagtgtcgatggaaagctgtCttctaaagtctctgtaagag	11	6	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	103282400	103282400	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	missense	c.7097	p.R2366I	1.000	superfamily_HECT,superfamily_PABP_HYD	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	40	0	0	63	8	11.27	-	-	-	A	103282400	C	A	103282400	3	1	816	1	0	0	0	0	1	0	0	0	17002	913	32	2	1342	2	UBR5	8	103282400	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	4123579	103282400	43081622	70	68869										
EIF3E	0	genome.wustl.edu	37	chr8	109228677	109228677	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agctttttctgagccccatcAaagtcaaagttaacatataa	5	9	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	109228677	109228677	A	G	SNP	EIF3E	ENST00000220849	human	ensembl	69_37n	-1	known	silent	c.915	p.F305	1.000	pfam_PCI_dom,pirsf_Transl_init_fac_3_su6_euk	pfam_eIF3_su6_N,pfam_PCI_dom,smart_PCI_dom,pirsf_Transl_init_fac_3_su6_euk	-	no_errors	EIF3E	HGNC	ENSG00000104408	81	0	0	141	19	11.88	-	-	-	G	109228677	A	G	109228677	2	3	816	1	0	0	0	0	0	0	0	1	5052	127	5	5		5	EIF3E	8	109228677	Silent	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	5946277	109228677	37135345	71	68870										
FAM49B	0	genome.wustl.edu	37	chr8	130867881	130867881	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agttcatcaaaccggagtgtGaaatgaagaatttctgcaaa	9	6	3	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	8	130867881	130867881	G	A	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	silent	c.414	p.F138	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	44	0	0	74	25	25.25	-	-	-	A	130867881	G	A	130867881	2	1	816	1	0	0	0	0	0	0	0	1	5622	1281	45	2		2	FAM49B	8	130867881	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	21639204	130867881	15496141	72	68871										
FREM1	0	genome.wustl.edu	37	chr9	14859447	14859447	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ccaggagatagacccacaggAtaaaagtttctatgaaggta	10	7	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	9	14859447	14859447	A	G	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.365	p.I122T	0.682	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	32	0	0	36	8	18.18	-	-	-	G	14859447	A	G	14859447	3	3	816	1	0	0	0	0	1	0	0	0	6093	333	12	5	6360	5	FREM1	9	14859447	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09		14859447	126353984	73	68872										
TLN1	0	genome.wustl.edu	37	chr9	35707382	35707382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	caggaatgctggagaactcaGggttggacgcaaaggcactc	14	9	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	9	35707382	35707382	G	A	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.4736	p.P1579L	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	18	0	0	19	6	24	-	-	-	A	35707382	G	A	35707382	3	1	816	1	0	0	0	0	1	0	0	0	16042	1000	35	4	2977	4	TLN1	9	35707382	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	20847935	35707382	105506049	74	68873										
PCSK5	0	genome.wustl.edu	37	chr9	78799667	78799667	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgtacagaatgtagggatgGgttaaggtaagagagtgaag	16	2	0	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	9	78799667	78799667	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	1	known	missense	c.2276	p.G759A	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_EGF-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	44	0	0	60	8	11.76	-	-	-	C	78799667	G	C	78799667	3	2	816	1	0	0	0	0	1	0	0	0	11676	1232	43	4	2342	4	PCSK5	9	78799667	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	43092285	78799667	62413764	75	68874										
ROR2	0	genome.wustl.edu	37	chr9	94487258	94487258	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gctttgtccttcagcgttttGatggccacagcctgggtctg	12	11	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	9	94487258	94487258	G	C	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	missense	c.1518	p.I506M	1.000	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	13	0	0	22	5	18.52	-	-	-	C	94487258	G	C	94487258	3	2	816	1	0	0	0	0	1	0	0	0	13613	1280	45	2	1317	2	ROR2	9	94487258	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	15687591	94487258	46726173	76	68875										
ITIH5	0	genome.wustl.edu	37	chr10	7658059	7658059	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgcacaaaatagccatttagAacctggtggagggaaaagaa	11	6	0	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	10	7658059	7658059	A	T	SNP	ITIH5	ENST00000461751	human	ensembl	69_37n	-1	known	missense	c.157	p.S53T	0.989	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ITIH5	HGNC	ENSG00000123243	56	0	0	105	17	13.93	-	-	-	T	7658059	A	T	7658059	3	4	816	1	0	0	0	0	1	0	0	0	7961	233	9	5	2158	5	ITIH5	10	7658059	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09		7658059	127876688	77	68876										
LRRC18	0	genome.wustl.edu	37	chr10	50122049	50122049	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	taaggtccagctcgtccatgTcactaaggcgcagaatacac	9	12	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	10	50122049	50122049	T	A	SNP	LRRC18	ENST00000374160	human	ensembl	69_37n	-1	known	missense	c.152	p.D51V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC18	HGNC	ENSG00000165383	52	0	0	47	8	14.55	-	-	-	A	50122049	T	A	50122049	3	1	816	1	0	0	0	0	1	0	0	0	9040	1667	58	5	641	5	LRRC18	10	50122049	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	42463990	50122049	85412698	78	68877										
AVPI1	0	genome.wustl.edu	37	chr10	99437633	99437633	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctctttccctggatcagtgtCtgatctggtggaggtagctt	12	9	4	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	10	99437633	99437633	C	G	SNP	AVPI1	ENST00000370626	human	ensembl	69_37n	-1	known	missense	c.437	p.R146T	1.000	NULL	NULL	-	no_errors	AVPI1	HGNC	ENSG00000119986	63	0	0	93	15	13.89	-	-	-	G	99437633	C	G	99437633	3	3	816	1	0	0	0	0	1	0	0	0	1234	913	32	2	10	2	AVPI1	10	99437633	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	49315584	99437633	36097114	79	68878										
ZNF215	0	genome.wustl.edu	37	chr11	6977210	6977210	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agaaaggggtctccaaaatgTgataagtttaaaacttactt	8	5	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	6977210	6977210	T	C	SNP	ZNF215	ENST00000278319	human	ensembl	69_37n	1	known	silent	c.1002	p.C334	0.001	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054	28	0	0	29	16	35.56	-	-	-	C	6977210	T	C	6977210	2	2	816	1	0	0	0	0	0	0	0	1	17867	1702	59	5		5	ZNF215	11	6977210	Silent	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09		6977210	128029306	80	68879										
SLC5A12	0	genome.wustl.edu	37	chr11	26702758	26702758	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgattccagtaagaagacctCctagtgcaccctggatgaag	10	10	0	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	26702758	26702758	C	A	SNP	SLC5A12	ENST00000396005	human	ensembl	69_37n	-1	known	missense	c.1319	p.G440V	0.992	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942	41	0	0	40	7	14.89	-	-	-	A	26702758	C	A	26702758	3	1	816	1	0	0	0	0	1	0	0	0	14753	855	30	2	553	2	SLC5A12	11	26702758	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	19725548	26702758	108303758	81	68880										
SLC22A10	0	genome.wustl.edu	37	chr11	63069806	63069806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttttgttcaccacagatttgCaaacacaatacctttttatg	4	9	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	63069806	63069806	C	G	SNP	SLC22A10	ENST00000332793	human	ensembl	69_37n	1	known	missense	c.1076	p.A359G	0.012	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	76	0	0	109	15	12.1	-	-	-	G	63069806	C	G	63069806	3	3	816	1	0	0	0	0	1	0	0	0	14530	710	25	4	1102	4	SLC22A10	11	63069806	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	36367048	63069806	71936710	82	68881										
PAAF1	0	genome.wustl.edu	37	chr11	73627677	73627680	+	Frame_Shift_Del	DEL	ATTT	ATTT	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgggactcaagatggaaacAtttatcagctggatgtgagg							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	ATTT	ATTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	73627677	73627680	ATTT	-	DEL	PAAF1	ENST00000310571	human	ensembl	69_37n	1	known	frame_shift_del	c.907_910	p.Y304fs	1.000:1.000:1.000:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAAF1	HGNC	ENSG00000175575	77	0	0	86	18	17.31	-	-	-	-	73627680	ATTT	-	73627677	7	5	816	1	0	1	0	1	0	0	0	0	11435	217	8	0	941	0	PAAF1	11	73627677	Frame_Shift_Del	DEL	ATTT	TCGA-E2-A1LH-01A-11D-A14G-09	10557871	73627677	61378839	83	68882										
UCP2	0	genome.wustl.edu	37	chr11	73687912	73687912	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cctctcgggcaatggtcttgTaggcattgacggtgctttgg	14	9	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	73687912	73687912	T	A	SNP	UCP2	ENST00000310473	human	ensembl	69_37n	-1	known	missense	c.488	p.Y163F	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP2	HGNC	ENSG00000175567	44	0	0	28	16	36.36	-	-	-	A	73687912	T	A	73687912	3	1	816	1	0	0	0	0	1	0	0	0	17028	1638	57	5	457	5	UCP2	11	73687912	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	60235	73687912	61318604	84	68883										
XRRA1	0	genome.wustl.edu	37	chr11	74574068	74574068	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	taagatgaaaacacaacctcTgaaacagaagagaaacagaa	7	7	1	6			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	74574068	74574068	T	C	SNP	XRRA1	ENST00000340360	human	ensembl	69_37n	-1	known	splice_site	c.980-2	e9-2	1.000	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	30	0	0	37	10	21.28	-	-	-	C	74574068	T	C	74574068	5	2	816	1	0	0	0	0	0	0	1	0	17558	1594	55	5	1436	5	XRRA1	11	74574068	Splice_Site	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	886156	74574068	60432448	85	68884										
DYNC2H1	0	genome.wustl.edu	37	chr11	103106473	103106473	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgctgcatttattacatatCtttctgctgctcctgaatct	5	11	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	103106473	103106473	C	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.9640	p.L3214I	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	75	0	0	80	10	11.11	-	-	-	A	103106473	C	A	103106473	3	1	816	1	0	0	0	0	1	0	0	0	4881	913	32	2	9886	2	DYNC2H1	11	103106473	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	28532405	103106473	31900043	86	68885										
ALG9	0	genome.wustl.edu	37	chr11	111680367	111680367	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ataggattaaagccacatacCtagaagcatcaaggaatggt	9	7	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	111680367	111680367	C	G	SNP	ALG9	ENST00000531154	human	ensembl	69_37n	-1	known	missense	c.1220	p.R407T	1.000	NULL	pfam_GPI_mannosylTrfase	-	no_errors	ALG9	HGNC	ENSG00000086848	90	0	0	104	22	17.46	-	-	-	G	111680367	C	G	111680367	3	3	816	1	0	0	0	0	1	0	0	0	524	695	24	4	131	4	ALG9	11	111680367	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	8573894	111680367	23326149	87	68886										
C11orf63	0	genome.wustl.edu	37	chr11	122774895	122774895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	taagcccaaactatgagcatGgtgcccgtcgcagcaagccg	11	13	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	122774895	122774895	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	69_37n	1	known	missense	c.607	p.G203S	0.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	20	0	0	19	12	38.71	-	-	-	A	122774895	G	A	122774895	3	1	816	1	0	0	0	0	1	0	0	0	1665	1348	47	4	613	4	C11orf63	11	122774895	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	11094528	122774895	12231621	88	68887										
OR10G4	0	genome.wustl.edu	37	chr11	123886801	123886801	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	actgtggacccaaccagatcCagcactacttctgtgacgca	8	14	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	123886801	123886801	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	nonsense	c.520	p.Q174*	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	118	0	0	160	20	11.11	-	-	-	T	123886801	C	T	123886801	4	4	816	1	0	0	0	0	0	1	0	0	10974	595	21	4	522	4	OR10G4	11	123886801	Nonsense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	1111906	123886801	11119715	89	68888										
EI24	0	genome.wustl.edu	37	chr11	125447449	125447449	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tattcctgtgcttcagtcggTaacagcccgaattatcggta	9	10	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	125447449	125447449	T	C	SNP	EI24	ENST00000278903	human	ensembl	69_37n	1	known	missense	c.299	p.V100A	1.000	NULL	NULL	-	no_errors	EI24	HGNC	ENSG00000149547	161	0	0	217	45	17.18	-	-	-	C	125447449	T	C	125447449	3	2	816	1	0	0	0	0	1	0	0	0	5020	1638	57	5	313	5	EI24	11	125447449	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	1560648	125447449	9559067	90	68889										
FOXRED1	0	genome.wustl.edu	37	chr11	126147394	126147394	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ccagaatggcgtggtgggccCccacccgctagttgtcaaca	12	14	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	11	126147394	126147394	C	G	SNP	FOXRED1	ENST00000263578	human	ensembl	69_37n	1	known	missense	c.1271	p.P424R	0.977	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074	37	0	0	32	16	33.33	-	-	-	G	126147394	C	G	126147394	3	3	816	1	0	0	0	0	1	0	0	0	6081	623	22	4	1313	4	FOXRED1	11	126147394	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	699945	126147394	8859122	91	68890										
DDX11	0	genome.wustl.edu	37	chr12	31244703	31244703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	catgcggccactcggcaggcCgcgggcatccggctgcagga	16	15	0	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	31244703	31244703	C	T	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	silent	c.1140	p.A380	0.617	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	25	0	0	18	9	33.33	-	-	-	T	31244703	C	T	31244703	2	4	816	1	0	0	0	0	0	0	0	1	4374	639	23	1		1	DDX11	12	31244703	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		31244703	102607192	92	68891										
IFNG	0	genome.wustl.edu	37	chr12	68549246	68549246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gagttcatgtattgctttgcGttggacattcaagtcagtta	10	6	3	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	68549246	68549246	G	A	SNP	IFNG	ENST00000229135	human	ensembl	69_37n	-1	known	missense	c.388	p.R130C	0.999	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537	59	0	0	36	15	29.41	-	-	-	A	68549246	G	A	68549246	3	1	816	1	0	0	0	0	1	0	0	0	7602	1145	40	1	116	1	IFNG	12	68549246	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	37304543	68549246	65302649	93	68892										
ZDHHC17	0	genome.wustl.edu	37	chr12	77191265	77191265	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gatatggtgaacctcttggaCggaaaactcatattgatgat	10	6	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	77191265	77191265	C	G	SNP	ZDHHC17	ENST00000334822	human	ensembl	69_37n	1	known	missense	c.145	p.R49G	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase,prints_Ankyrin_rpt	-	no_errors	ZDHHC17	HGNC	ENSG00000186908	70	0	0	62	7	10.14	-	-	-	G	77191265	C	G	77191265	3	3	816	1	0	0	0	0	1	0	0	0	17703	527	19	3	151	3	ZDHHC17	12	77191265	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	8642019	77191265	56660630	94	68893										
AMDHD1	0	genome.wustl.edu	37	chr12	96359545	96359548	+	Frame_Shift_Del	DEL	TTGC	TTGC	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gatttcaaccccaatgcataTtgcttttcaatggtaattat							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	TTGC	TTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	96359545	96359548	TTGC	-	DEL	AMDHD1	ENST00000266736	human	ensembl	69_37n	1	known	frame_shift_del	c.1020_1023	p.C341fs	1.000:1.000:1.000:0.998	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344	95	0	0	116	16	12.12	-	-	-	-	96359548	TTGC	-	96359545	7	5	816	1	0	1	0	1	0	0	0	0	567	1500	52	0	1046	0	AMDHD1	12	96359545	Frame_Shift_Del	DEL	TTGC	TCGA-E2-A1LH-01A-11D-A14G-09	19168280	96359545	37492350	95	68894										
IKBIP	0	genome.wustl.edu	37	chr12	99007970	99007970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttgtaatgtcttgagaaagcGtcgtcagactgttgttcagt	11	6	3	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	99007970	99007970	G	A	SNP	IKBIP	ENST00000342502	human	ensembl	69_37n	-1	known	missense	c.446	p.T149M	0.001	NULL	NULL	-	no_errors	IKBIP	HGNC	ENSG00000166130	55	0	0	65	8	10.96	-	-	-	A	99007970	G	A	99007970	3	1	816	1	0	0	0	0	1	0	0	0	7663	1145	40	1	610	1	IKBIP	12	99007970	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	2648425	99007970	34843925	96	68895										
CKAP4	0	genome.wustl.edu	37	chr12	106633464	106633464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctccttcggcccgtgggaatCggacttcagctggcggagct	14	13	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	106633464	106633464	C	G	SNP	CKAP4	ENST00000378026	human	ensembl	69_37n	-1	known	missense	c.1147	p.D383H	0.001	superfamily_Tscrpt_elong_fac_GreA/B_N	superfamily_Tscrpt_elong_fac_GreA/B_N,superfamily_STAT_TF_coiled-coil	-	no_errors	CKAP4	HGNC	ENSG00000136026	8	0	0	7	6	46.15	-	-	-	G	106633464	C	G	106633464	3	3	816	1	0	0	0	0	1	0	0	0	3474	884	31	3	665	3	CKAP4	12	106633464	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7625494	106633464	27218431	97	68896										
TRAFD1	0	genome.wustl.edu	37	chr12	112587555	112587555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttctggtttttcttgtttagGaccagtgtgaccaacgccca	9	10	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	112587555	112587555	G	T	SNP	TRAFD1	ENST00000257604	human	ensembl	69_37n	1	known	missense	c.1159	p.D387Y	1.000	superfamily_TRAF-like	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148	44	0	0	47	13	21.67	-	-	-	T	112587555	G	T	112587555	3	4	816	1	0	0	0	0	1	0	0	0	16543	1188	41	2	1189	2	TRAFD1	12	112587555	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	5954091	112587555	21264340	98	68897										
ZCCHC8	0	genome.wustl.edu	37	chr12	122958130	122958130	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gaggtacattccagtagattCtgccatattctcaaattcaa	6	9	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	12	122958130	122958130	C	T	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.2038	p.E680K	1.000	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	106	0	0	94	22	18.97	-	-	-	T	122958130	C	T	122958130	3	4	816	1	0	0	0	0	1	0	0	0	17690	922	32	2	89	2	ZCCHC8	12	122958130	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	10370575	122958130	10893765	99	68898										
SACS	0	genome.wustl.edu	37	chr13	23912087	23912087	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gatccatcagagaagactttGgtcagttctttcccttttcc	7	11	3	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	13	23912087	23912087	G	C	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	silent	c.5928	p.T1976	0.149	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	37	0	0	31	6	16.22	-	-	-	C	23912087	G	C	23912087	2	2	816	1	0	0	0	0	0	0	0	1	13890	1335	47	4		4	SACS	13	23912087	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09		23912087	91257791	100	68899										
INTS6	0	genome.wustl.edu	37	chr13	51948545	51948545	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tttattttgaggtccagccaCaaattcatctgcttcatcta	5	10	4	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	13	51948545	51948545	C	G	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1903	p.V635L	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	100	0	0	100	14	12.28	-	-	-	G	51948545	C	G	51948545	3	3	816	1	0	0	0	0	1	0	0	0	7836	478	17	4	776	4	INTS6	13	51948545	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	28036458	51948545	63221333	101	68900										
CARS2	0	genome.wustl.edu	37	chr13	111293891	111293893	+	In_Frame_Del	DEL	GCT	GCT	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgtgctccatcctcagcccGctgatttttggtcttttgtc							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	13	111293891	111293893	GCT	-	DEL	CARS2	ENST00000257347	human	ensembl	69_37n	-1	known	in_frame_del	c.1688_1686	p.A563in_frame_del	0.000:0.000:0.000	NULL	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS2	HGNC	ENSG00000134905	71	0	0	116	17	12.69	-	-	-	-	111293893	GCT	-	111293891	7	5	816	1	0	1	0	1	0	0	0	0	2683	1087	38	0	10	0	CARS2	13	111293891	In_Frame_Del	DEL	GCT	TCGA-E2-A1LH-01A-11D-A14G-09	59345346	111293891	3875987	102	68901										
AKAP6	0	genome.wustl.edu	37	chr14	33015163	33015163	+	Missense_Mutation	SNP	C	C	G													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agtagatcctcctgacagatCcaaactttgcctggtattgc							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	14	33015163	33015163	C	G	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.1304	p.S435C	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	37	0	0	56	9	13.85	-	-	-	G	33015163	C	G	33015163	3	3	816	1	0	0	0	0	1	0	0	0	455	855	30	2	1314	2	AKAP6	14	33015163	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		33015163	74334377	103	68902	495	2								
AKAP6	0	genome.wustl.edu	37	chr14	33015164	33015164	+	Silent	SNP	C	C	A													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gtagatcctcctgacagatcCaaactttgcctggtattgca							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	14	33015164	33015164	C	A	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	silent	c.1305	p.S435	0.970	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	37	0	0	56	9	13.85	-	-	-	A	33015164	C	A	33015164	2	1	816	1	0	0	0	0	0	0	0	1	455	581	21	4		4	AKAP6	14	33015164	Silent	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	1	33015164	74334376	104	68903	495	2								
SNX6	0	genome.wustl.edu	37	chr14	35032351	35032351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgtgtctccatttaacactgCcaggcagttctgcagcaact	8	12	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	14	35032351	35032351	C	A	SNP	SNX6	ENST00000362031	human	ensembl	69_37n	-1	known	missense	c.1234	p.A412S	1.000	pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515	65	0	0	87	21	19.44	-	-	-	A	35032351	C	A	35032351	3	1	816	1	0	0	0	0	1	0	0	0	14995	739	26	4	26	4	SNX6	14	35032351	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	2017187	35032351	72317189	105	68904										
TMEM63C	0	genome.wustl.edu	37	chr14	77697973	77697973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgtggggacgacgcacgcatCtacatcgtgttccagtacca	11	12	1	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	14	77697973	77697973	C	G	SNP	TMEM63C	ENST00000298351	human	ensembl	69_37n	1	known	missense	c.393	p.I131M	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	96	0	0	126	16	11.27	-	-	-	G	77697973	C	G	77697973	3	3	816	1	0	0	0	0	1	0	0	0	16287	903	32	2	411	2	TMEM63C	14	77697973	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	42665622	77697973	29651567	106	68905										
DYNC1H1	0	genome.wustl.edu	37	chr14	102496209	102496209	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agccaagagctggaggtgaaGaatgcagcagccaatgacaa	13	8	0	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	14	102496209	102496209	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	1	known	missense	c.9696	p.K3232N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	40	0	0	38	5	11.36	-	-	-	T	102496209	G	T	102496209	3	4	816	1	0	0	0	0	1	0	0	0	4876	933	33	2	9894	2	DYNC1H1	14	102496209	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	24798236	102496209	4853331	107	68906										
SLC12A1	0	genome.wustl.edu	37	chr15	48551430	48551430	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gtcttaacagggggacccatGacaagacctgctctcctgga	11	12	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	15	48551430	48551430	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	69_37n	1	known	missense	c.2076	p.M692I	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803	95	0	0	97	32	24.81	-	-	-	A	48551430	G	A	48551430	3	1	816	1	0	0	0	0	1	0	0	0	14471	1290	45	2	2238	2	SLC12A1	15	48551430	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09		48551430	53979962	108	68907										
SLC27A2	0	genome.wustl.edu	37	chr15	50515175	50515175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	accacagaaaccaaatgaccGtgatcataaagtgagactgg	9	9	1	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	15	50515175	50515175	G	A	SNP	SLC27A2	ENST00000267842	human	ensembl	69_37n	1	known	missense	c.986	p.R329H	0.988	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A2	HGNC	ENSG00000140284	89	0	0	85	19	18.27	-	-	-	A	50515175	G	A	50515175	3	1	816	1	0	0	0	0	1	0	0	0	14615	1145	40	1	1004	1	SLC27A2	15	50515175	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	1963745	50515175	52016217	109	68908										
ZNF609	0	genome.wustl.edu	37	chr15	64970559	64970559	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgtccatgtgcctgtgtcctCcccacttacccagcaccagt	7	17	0	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	15	64970559	64970559	C	G	SNP	ZNF609	ENST00000326648	human	ensembl	69_37n	1	known	missense	c.3647	p.S1216C	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	46	0	0	56	11	16.42	-	-	-	G	64970559	C	G	64970559	3	3	816	1	0	0	0	0	1	0	0	0	18131	855	30	2	3665	2	ZNF609	15	64970559	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	14455384	64970559	37560833	110	68909										
HEXA	0	genome.wustl.edu	37	chr15	72641433	72641433	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctcataccagcaggtgaaatCaacctcatctcctccaagat	5	14	4	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	15	72641433	72641433	C	T	SNP	HEXA	ENST00000268097	human	ensembl	69_37n	-1	known	missense	c.973	p.D325N	0.999	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXA	HGNC	ENSG00000213614	41	0	0	59	8	11.94	-	-	-	T	72641433	C	T	72641433	3	4	816	1	0	0	0	0	1	0	0	0	7124	826	29	2	644	2	HEXA	15	72641433	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7670874	72641433	29889959	111	68910										
MYH11	0	genome.wustl.edu	37	chr16	15797866	15797866	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gcttattcactggccttggtTccattgaagtctgcgtctcg	10	11	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	16	15797866	15797866	T	C	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	silent	c.5922	p.G1974	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	113	0	0	142	24	14.46	-	-	-	C	15797866	T	C	15797866	2	2	816	1	0	0	0	0	0	0	0	1	10103	1770	62	5		5	MYH11	16	15797866	Silent	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09		15797866	74556887	112	68911										
CDH8	0	genome.wustl.edu	37	chr16	61689466	61689466	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cttcgacattgcaagactggAcgacaccgtcattgctgcag	10	12	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	16	61689466	61689466	A	T	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1814	p.V605D	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	61	0	0	62	10	13.89	-	-	-	T	61689466	A	T	61689466	3	4	816	1	0	0	0	0	1	0	0	0	3145	275	10	5	593	5	CDH8	16	61689466	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	45891600	61689466	28665287	113	68912										
TERF2	0	genome.wustl.edu	37	chr16	69401045	69401045	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcctgtgcaccagacagagtCttgaaagctgctttcagagt	10	10	2	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	16	69401045	69401045	C	G	SNP	TERF2	ENST00000254942	human	ensembl	69_37n	-1	known	missense	c.879	p.K293N	1.000	pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF2	HGNC	ENSG00000132604	38	0	0	50	9	15.25	-	-	-	G	69401045	C	G	69401045	3	3	816	1	0	0	0	0	1	0	0	0	15857	912	32	2	639	2	TERF2	16	69401045	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	7711579	69401045	20953708	114	68913										
NFAT5	0	genome.wustl.edu	37	chr16	69681063	69681063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	agtggagagctgctcctcagCcgtgggggtaagtaacagag	16	8	1	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	16	69681063	69681063	C	T	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	missense	c.386	p.A129V	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	74	0	0	68	12	15	-	-	-	T	69681063	C	T	69681063	3	4	816	1	0	0	0	0	1	0	0	0	10432	739	26	4	400	4	NFAT5	16	69681063	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	280018	69681063	20673690	115	68914										
SF3B3	0	genome.wustl.edu	37	chr16	70595601	70595601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cgcttccatctcaccccactGtcttacgagacactggaatt	6	15	2	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	16	70595601	70595601	G	A	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	silent	c.2202	p.L734	1.000	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	37	0	0	46	12	20.69	-	-	-	A	70595601	G	A	70595601	2	1	816	1	0	0	0	0	0	0	0	1	14240	1364	48	4		4	SF3B3	16	70595601	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	914538	70595601	19759152	116	68915										
TP53	0	genome.wustl.edu	37	chr17	7578535	7578535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tggccagttggcaaaacatcTtgttgagggcaggggagtac	15	7	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	17	7578535	7578535	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.395	p.K132T	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	32	0	0	34	10	22.73	-	-	-	G	7578535	T	G	7578535	3	3	816	1	0	0	0	0	1	0	0	0	16477	1609	56	5	903	5	TP53	17	7578535	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09		7578535	73616675	117	68916										
CPD	0	genome.wustl.edu	37	chr17	28766018	28766018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ttcccagatgtttcaaggtaGaccttgcaagaatatgtatc	8	8	1	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	17	28766018	28766018	G	C	SNP	CPD	ENST00000225719	human	ensembl	69_37n	1	known	missense	c.2153	p.R718T	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	47	0	0	58	14	19.44	-	-	-	C	28766018	G	C	28766018	3	2	816	1	0	0	0	0	1	0	0	0	3828	942	33	2	2187	2	CPD	17	28766018	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	21187483	28766018	52429192	118	68917										
PLCD3	0	genome.wustl.edu	37	chr17	43195728	43195728	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ataggtgttgtgggaggaagAgatgaagtagtgggcaaggg	20	1	0	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	17	43195728	43195728	A	T	SNP	PLCD3	ENST00000322765	human	ensembl	69_37n	-1	known	missense	c.1045	p.S349T	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCD3	HGNC	ENSG00000161714	70	0	0	68	34	33.33	-	-	-	T	43195728	A	T	43195728	3	4	816	1	0	0	0	0	1	0	0	0	12106	304	11	5	1363	5	PLCD3	17	43195728	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	14429710	43195728	37999482	119	68918										
EPX	0	genome.wustl.edu	37	chr17	56276953	56276953	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ctgggcaaggcccgggccagGagaaccctggggcactacag	16	13	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	17	56276953	56276953	G	C	SNP	EPX	ENST00000225371	human	ensembl	69_37n	1	known	missense	c.1335	p.R445S	0.001	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	41	0	0	76	17	18.28	-	-	-	C	56276953	G	C	56276953	3	2	816	1	0	0	0	0	1	0	0	0	5237	1165	41	2	1369	2	EPX	17	56276953	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	13081225	56276953	24918257	120	68919										
TWSG1	0	genome.wustl.edu	37	chr18	9396385	9396385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tccgggcactcacagaaggaGatactcagttgaattggaac	11	9	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	18	9396385	9396385	G	C	SNP	TWSG1	ENST00000262120	human	ensembl	69_37n	1	known	missense	c.331	p.D111H	1.000	pfam_Tsg	pfam_Tsg	-	no_errors	TWSG1	HGNC	ENSG00000128791	57	0	0	67	8	10.67	-	-	-	C	9396385	G	C	9396385	3	2	816	1	0	0	0	0	1	0	0	0	16882	942	33	2	341	2	TWSG1	18	9396385	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09		9396385	68680863	121	68920										
ALPK2	0	genome.wustl.edu	37	chr18	56247679	56247679	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ggttaggagacaattgtgggTtctctgatgagcactcaacc	12	8	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	18	56247679	56247679	T	G	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.329	p.N110T	0.071	pfscan_Ig-like	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	115	0	0	90	36	28.57	-	-	-	G	56247679	T	G	56247679	3	3	816	1	0	0	0	0	1	0	0	0	545	1725	60	5	6223	5	ALPK2	18	56247679	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09	46851294	56247679	21829569	122	68921										
SAFB2	0	genome.wustl.edu	37	chr19	5604645	5604645	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgtcgacactcgataattttTccttcttcacttcgcactct	4	13	3	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	5604645	5604645	T	C	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.1508	p.E503G	0.997	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	88	0	0	97	14	12.61	-	-	-	C	5604645	T	C	5604645	3	2	816	1	0	0	0	0	1	0	0	0	13893	1783	62	5	1397	5	SAFB2	19	5604645	Missense_Mutation	SNP	T	TCGA-E2-A1LH-01A-11D-A14G-09		5604645	53524338	123	68922										
ACER1	0	genome.wustl.edu	37	chr19	6333478	6333478	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ccacgcactcaccgtgttgtAgaactcggccaccagctccg	9	17	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	6333478	6333478	A	T	SNP	ACER1	ENST00000301452	human	ensembl	69_37n	-1	known	missense	c.85	p.Y29N	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER1	HGNC	ENSG00000167769	12	0	0	14	11	44	-	-	-	T	6333478	A	T	6333478	3	4	816	1	0	0	0	0	1	0	0	0	138	420	15	5	733	5	ACER1	19	6333478	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	728833	6333478	52795505	124	68923										
DENND1C	0	genome.wustl.edu	37	chr19	6468312	6468312	+	Frame_Shift_Del	DEL	C	C	-													0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tctggctcggtctcaggctgCctgcgctcttggctcccatg							TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	6468312	6468312	C	-	DEL	DENND1C	ENST00000381480	human	ensembl	69_37n	-1	known	frame_shift_del	c.1724	p.G575fs	0.015	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744	36	0	0	50	6	10.71	-	-	-	-	6468312	C	-	6468312	7	5	816	1	0	1	0	1	0	0	0	0	4464	739	26	0	689	0	DENND1C	19	6468312	Frame_Shift_Del	DEL	C	TCGA-E2-A1LH-01A-11D-A14G-09	134834	6468312	52660671	125	68924										
STXBP2	0	genome.wustl.edu	37	chr19	7707892	7707892	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aacatcaaagacctatcccaGatcctgaaaaagatgccgca	6	12	1	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	7707892	7707892	G	C	SNP	STXBP2	ENST00000441779	human	ensembl	69_37n	1	known	missense	c.1017	p.Q339H	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	37	0	0	28	9	24.32	-	-	-	C	7707892	G	C	7707892	3	2	816	1	0	0	0	0	1	0	0	0	15444	933	33	2	1030	2	STXBP2	19	7707892	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	1239580	7707892	51421091	126	68925										
ZNF43	0	genome.wustl.edu	37	chr19	21990455	21990455	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gtgttgtcaaaatcactgtcAcatcttcaggtttgtagagt	9	7	5	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	21990455	21990455	A	T	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.2384	p.V795E	0.595	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	109	0	0	64	26	28.89	-	-	-	T	21990455	A	T	21990455	3	4	816	1	0	0	0	0	1	0	0	0	17999	159	6	5	49	5	ZNF43	19	21990455	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	14282563	21990455	37138528	127	68926										
PSENEN	0	genome.wustl.edu	37	chr19	36237374	36237374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	caacatcttctggttcttccGagaggccttccttgtcccag	8	14	3	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	36237374	36237374	G	A	SNP	PSENEN	ENST00000222266	human	ensembl	69_37n	1	known	missense	c.116	p.R39Q	0.996	pfam_Gamma_Secretase_Asp_P_PEN2	pfam_Gamma_Secretase_Asp_P_PEN2	-	no_errors	PSENEN	HGNC	ENSG00000205155	120	0	0	116	25	17.73	-	-	-	A	36237374	G	A	36237374	3	1	816	1	0	0	0	0	1	0	0	0	12732	1058	37	1	122	1	PSENEN	19	36237374	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	14246919	36237374	22891609	128	68927										
PRODH2	0	genome.wustl.edu	37	chr19	36297349	36297349	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tacctctgactggtggcctcAtagtcaggctgagtggggtc	14	10	3	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	36297349	36297349	A	G	SNP	PRODH2	ENST00000301175	human	ensembl	69_37n	-1	known	silent	c.1212	p.Y404	0.462	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	23	0	0	26	6	18.75	-	-	-	G	36297349	A	G	36297349	2	3	816	1	0	0	0	0	0	0	0	1	12630	224	8	5		5	PRODH2	19	36297349	Silent	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	59975	36297349	22831634	129	68928										
ZNF180	0	genome.wustl.edu	37	chr19	44982147	44982147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tgcagactctctcatgaataActgctttcctttgagtgaat	7	9	2	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	44982147	44982147	A	G	SNP	ZNF180	ENST00000221327	human	ensembl	69_37n	-1	known	missense	c.551	p.V184A	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	81	0	0	74	20	21.28	-	-	-	G	44982147	A	G	44982147	3	3	816	1	0	0	0	0	1	0	0	0	17844	43	2	5	1531	5	ZNF180	19	44982147	Missense_Mutation	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09	8684798	44982147	14146836	130	68929										
KLK13	0	genome.wustl.edu	37	chr19	51561881	51561881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gtagacttgacgacactcctCatctgagcgaagttggatgt	11	9	2	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	19	51561881	51561881	C	T	SNP	KLK13	ENST00000156476	human	ensembl	69_37n	-1	known	missense	c.559	p.E187K	0.995	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	85	0	0	87	13	13	-	-	-	T	51561881	C	T	51561881	3	4	816	1	0	0	0	0	1	0	0	0	8454	835	29	2	282	2	KLK13	19	51561881	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	6579734	51561881	7567102	131	68930										
CST7	0	genome.wustl.edu	37	chr20	24937952	24937952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cccaggaccttaactcacgtGtgaagccaggatttcctaaa	8	12	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	20	24937952	24937952	G	C	SNP	CST7	ENST00000376835	human	ensembl	69_37n	1	known	missense	c.166	p.V56L	0.000	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST7	HGNC	ENSG00000077984	79	0	0	95	13	12.04	-	-	-	C	24937952	G	C	24937952	3	2	816	1	0	0	0	0	1	0	0	0	4009	1377	48	4	106	4	CST7	20	24937952	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09		24937952	38087568	132	68931										
RBM12	0	genome.wustl.edu	37	chr20	34240553	34240553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	aaaggccaccatggcttcacCtgtgggcatacctttttcat	8	12	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	20	34240553	34240553	C	T	SNP	RBM12	ENST00000359646	human	ensembl	69_37n	-1	known	missense	c.2692	p.G898S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	59	0	0	70	19	21.35	-	-	-	T	34240553	C	T	34240553	3	4	816	1	0	0	0	0	1	0	0	0	13196	681	24	4	110	4	RBM12	20	34240553	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	9302601	34240553	28784967	133	68932										
RIMS4	0	genome.wustl.edu	37	chr20	43386365	43386365	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tccccgagcctggataatgtCcacctccaactgaccgttcc	7	17	0	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	20	43386365	43386365	C	G	SNP	RIMS4	ENST00000541604	human	ensembl	69_37n	-1	known	missense	c.400	p.D134H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RIMS4	HGNC	ENSG00000101098	26	0	0	38	6	13.64	-	-	-	G	43386365	C	G	43386365	3	3	816	1	0	0	0	0	1	0	0	0	13456	855	30	2	424	2	RIMS4	20	43386365	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	9145812	43386365	19639155	134	68933										
DSCAM	0	genome.wustl.edu	37	chr21	41459120	41459120	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tctttcatccatttgactgcAggagaagggtccccaacagc	9	12	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	21	41459120	41459120	A	C	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.3945	p.P1315	0.997	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	50	0	0	89	14	13.59	-	-	-	C	41459120	A	C	41459120	2	2	816	1	0	0	0	0	0	0	0	1	4803	175	7	5		5	DSCAM	21	41459120	Silent	SNP	A	TCGA-E2-A1LH-01A-11D-A14G-09		41459120	6670775	135	68934										
MYO18B	0	genome.wustl.edu	37	chr22	26272182	26272182	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	cgactggctgcacagtgcatCcagaagaatgtggctgtgtt	13	9	0	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	22	26272182	26272182	C	G	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	1	known	missense	c.4107	p.I1369M	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	26	0	0	27	15	35.71	-	-	-	G	26272182	C	G	26272182	3	3	816	1	0	0	0	0	1	0	0	0	10138	845	30	2	4197	2	MYO18B	22	26272182	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09		26272182	25032384	136	68935										
GGA1	0	genome.wustl.edu	37	chr22	38016265	38016265	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tatctgggctctcggacatcGgagaaggtgaagaacaagat	13	7	2	4			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	22	38016265	38016265	G	A	SNP	GGA1	ENST00000343632	human	ensembl	69_37n	1	known	silent	c.324	p.S108	0.224	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083	27	0	0	27	32	54.24	-	-	-	A	38016265	G	A	38016265	2	1	816	1	0	0	0	0	0	0	0	1	6404	1103	39	1		1	GGA1	22	38016265	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	11744083	38016265	13288301	137	68936										
PACSIN2	0	genome.wustl.edu	37	chr22	43275089	43275089	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ggcagagactggtcgcctgtCtggttgatgcccgtcagggt	16	10	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	22	43275089	43275089	C	G	SNP	PACSIN2	ENST00000263246	human	ensembl	69_37n	-1	known	missense	c.993	p.Q331H	1.000	superfamily_SH3_domain	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266	39	0	0	40	18	31.03	-	-	-	G	43275089	C	G	43275089	3	3	816	1	0	0	0	0	1	0	0	0	11448	912	32	2	483	2	PACSIN2	22	43275089	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	5258824	43275089	8029477	138	68937										
CACNA1F	0	genome.wustl.edu	37	chrX	49063555	49063555	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	tcttctgggatggtgaaaatGagagccccagagcctctcct	11	11	3	3			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	49063555	49063555	G	C	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.5175	p.L1725	0.951	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	74	0	0	152	40	20.83	-	-	-	C	49063555	G	C	49063555	2	2	816	1	0	0	0	0	0	0	0	1	2568	1277	45	2		2	CACNA1F	23	49063555	Silent	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09		49063555	106207005	139	68938										
PHKA1	0	genome.wustl.edu	37	chrX	71855080	71855080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gcggctacagaggtaggagaGgtctgttctaagcatttcca	13	8	2	2			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	71855080	71855080	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.1639	p.L547F	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	69	0	0	69	16	18.82	-	-	-	A	71855080	G	A	71855080	3	1	816	1	0	0	0	0	1	0	0	0	11917	1000	35	4	2100	4	PHKA1	23	71855080	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	22791525	71855080	83415480	140	68939										
HDX	0	genome.wustl.edu	37	chrX	83724316	83724316	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	atttttagtggctgttttctGaatagggattttatgtgctt	10	3	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	83724316	83724316	G	C	SNP	HDX	ENST00000297977	human	ensembl	69_37n	-1	known	missense	c.415	p.Q139E	0.997	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC	ENSG00000165259	145	0	0	143	19	11.38	-	-	-	C	83724316	G	C	83724316	3	2	816	1	0	0	0	0	1	0	0	0	7077	1299	45	2	1689	2	HDX	23	83724316	Missense_Mutation	SNP	G	TCGA-E2-A1LH-01A-11D-A14G-09	11869236	83724316	71546244	141	68940										
TIMM8A	0	genome.wustl.edu	37	chrX	100601591	100601591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gaagcgctcaacgcagttcaCaaaacaggcctcagcccgac	9	15	3	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	100601591	100601591	C	T	SNP	TIMM8A	ENST00000372902	human	ensembl	69_37n	-1	known	missense	c.190	p.V64M	1.000	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM8A	HGNC	ENSG00000126953	65	0	0	56	16	22.22	-	-	-	T	100601591	C	T	100601591	3	4	816	1	0	0	0	0	1	0	0	0	16009	478	17	4	107	4	TIMM8A	23	100601591	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	16877275	100601591	54668969	142	68941										
SLC9A6	0	genome.wustl.edu	37	chrX	135077034	135077034	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	gctgtgaagtgcagtcaagtCcaactaccttactggtaaat	9	9	1	1			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	135077034	135077034	C	A	SNP	SLC9A6	ENST00000370695	human	ensembl	69_37n	1	known	missense	c.415	p.P139T	1.000	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689	90	0	0	99	19	16.1	-	-	-	A	135077034	C	A	135077034	3	1	816	1	0	0	0	0	1	0	0	0	14807	855	30	2	421	2	SLC9A6	23	135077034	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	34475443	135077034	20193526	143	68942										
MAGEA12	0	genome.wustl.edu	37	chrX	151900530	151900530	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.198581560283688	28	0.000251470783882548	2.19892665474061	2.53013144590495	1.72281976744186	0.024191925886422	0.251698973584263	15	ggtgcttggcccttcctgttCttcgttgctggagccctcat	11	13	2	0			TCGA-E2-A1LH-01A-11D-A14G-09	TCGA-E2-A1LH-11A-22D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	605f1d27-db45-449a-a68f-4888b8c786a1	4feb8572-68f1-403c-8d3c-198fbe6e9fa4	X	151900530	151900530	C	G	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.271	p.E91Q	0.016	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	99	0	0	75	19	20.21	-	-	-	G	151900530	C	G	151900530	3	3	816	1	0	0	0	0	1	0	0	0	9233	922	32	2	677	2	MAGEA12	23	151900530	Missense_Mutation	SNP	C	TCGA-E2-A1LH-01A-11D-A14G-09	16823496	151900530	3370030	144	68943										
PPT1	0	genome.wustl.edu	37	chr1	40544493	40544493	+	RNA	DEL	T	T	-													0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	ccaggatatacctgtacagcTtttttttttctttttttcta							TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	40544493	40544493	T	-	DEL	PPT1	ENST00000372775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PPT1	HGNC	ENSG00000131238	15	0	0	4	3	42.86	-	-	-	-	40544493	T	-	40544493	6	5	817	0	1	1	0	1	0	0	0	0	12488	1624	56	0		0	PPT1	1	40544493	RNA	DEL	T	TCGA-E2-A1LI-01A-12D-A159-09		40544493	208706128	1	68944										
IGFN1	0	genome.wustl.edu	37	chr1	201182360	201182360	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	gtccctcggggagcaggggtCcctggaggctgagaatggtg	19	9	0	1			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	201182360	201182360	C	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.8339	p.S2780Y	0.003	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	41	0	0	49	6	10.91	-	-	-	A	201182360	C	A	201182360	3	1	817	1	0	0	0	0	1	0	0	0	7644	855	30	2	8381	2	IGFN1	1	201182360	Missense_Mutation	SNP	C	TCGA-E2-A1LI-01A-12D-A159-09	160637867	201182360	48068261	2	68945										
USH2A	0	genome.wustl.edu	37	chr1	215932045	215932045	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	tgtttgaacaatgtaatcatCactagcactgctgccacctc	6	12	2	1			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	215932045	215932045	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11281	p.D3761N	0.978	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	95	0	0	132	65	32.99	-	-	-	T	215932045	C	T	215932045	3	4	817	1	0	0	0	0	1	0	0	0	17133	826	29	2	4387	2	USH2A	1	215932045	Missense_Mutation	SNP	C	TCGA-E2-A1LI-01A-12D-A159-09	14749685	215932045	33318576	3	68946										
OTOF	0	genome.wustl.edu	37	chr2	26698897	26698897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	tgtgcgctcggagctggaacGcctgcttctctgtggggaag	16	10	1	0			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	26698897	26698897	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.2876	p.A959V	0.911	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	41	0	0	37	7	15.91	-	-	-	A	26698897	G	A	26698897	3	1	817	1	0	0	0	0	1	0	0	0	11376	1087	38	1	3394	1	OTOF	2	26698897	Missense_Mutation	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		26698897	216500476	4	68947										
SYNPR	0	genome.wustl.edu	37	chr3	63466619	63466619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	tcagcatcgacatagcgtttGcctacccattcaggtaggga	10	11	2	0			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	3	63466619	63466619	G	C	SNP	SYNPR	ENST00000478300	human	ensembl	69_37n	1	known	missense	c.196	p.A66P	1.000	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630	62	0	0	50	17	25.37	-	-	-	C	63466619	G	C	63466619	3	2	817	1	0	0	0	0	1	0	0	0	15551	1319	46	4	234	4	SYNPR	3	63466619	Missense_Mutation	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		63466619	134555811	5	68948										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27806084	27806084	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	acgggtcttagccttggcgcGagctttgccgccctgcttgc	13	14	1	0			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	6	27806084	27806084	G	C	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.34	p.R12G	0.989	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	30	0	0	29	12	29.27	-	-	-	C	27806084	G	C	27806084	3	2	817	1	0	0	0	0	1	0	0	0	7188	1058	37	3	362	3	HIST1H2AK	6	27806084	Missense_Mutation	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		27806084	143308983	6	68949										
PTCD1	0	genome.wustl.edu	37	chr7	99021452	99021452	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	tccagctggcggatgaccacTtcgttcaccgggaccctgtt	11	14	1	1			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	7	99021452	99021452	T	C	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	silent	c.2013	p.E671	0.991	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	63	0	0	70	19	21.35	-	-	-	C	99021452	T	C	99021452	2	2	817	1	0	0	0	0	0	0	0	1	12807	1606	56	5		5	PTCD1	7	99021452	Silent	SNP	T	TCGA-E2-A1LI-01A-12D-A159-09		99021452	60117211	7	68950										
CYHR1	0	genome.wustl.edu	37	chr8	145675924	145675924	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	acggggctgatcctcacgtcGtcgtaggggcccttgagcag	15	12	1	2			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	8	145675924	145675924	G	C	SNP	CYHR1	ENST00000438911	human	ensembl	69_37n	-1	known	missense	c.927	p.D309E	0.236	NULL	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	CYHR1	HGNC	ENSG00000187954	44	0	0	76	18	19.15	-	-	-	C	145675924	G	C	145675924	3	2	817	1	0	0	0	0	1	0	0	0	4171	1136	40	3	165	3	CYHR1	8	145675924	Missense_Mutation	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		145675924	688098	8	68951										
RPL6	0	genome.wustl.edu	37	chr12	112846113	112846113	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	actggttttgtaacagttgcGagaaccttctccttcttttt	7	9	2	1			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	12	112846113	112846113	G	C	SNP	RPL6	ENST00000202773	human	ensembl	69_37n	-1	known	silent	c.267	p.L89	0.291	pfam_Ribosomal_L6_N	pfam_Ribosomal_L6E,pfam_Ribosomal_L6_N,superfamily_Translation_prot_SH3-like	-	no_errors	RPL6	HGNC	ENSG00000089009	73	0	0	66	21	23.6	-	-	-	C	112846113	G	C	112846113	2	2	817	1	0	0	0	0	0	0	0	1	13684	1045	37	3		3	RPL6	12	112846113	Silent	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		112846113	21005782	9	68952										
MRPS31	0	genome.wustl.edu	37	chr13	41333214	41333214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	tgccacagcagatgcagctgCcaccaactcaggactcaggg	11	14	2	1			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	13	41333214	41333214	C	G	SNP	MRPS31	ENST00000323563	human	ensembl	69_37n	-1	known	missense	c.469	p.A157P	0.999	NULL	NULL	-	no_errors	MRPS31	HGNC	ENSG00000102738	58	0	0	63	7	10	-	-	-	G	41333214	C	G	41333214	3	3	817	1	0	0	0	0	1	0	0	0	9913	739	26	4	738	4	MRPS31	13	41333214	Missense_Mutation	SNP	C	TCGA-E2-A1LI-01A-12D-A159-09		41333214	73836664	10	68953										
KIAA0317	0	genome.wustl.edu	37	chr14	75136706	75136706	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	gaaagagcgggtgaagcgagCtcggaccaactgcttgtagg	16	8	0	2			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	14	75136706	75136706	C	A	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	missense	c.1732	p.A578S	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	46	0	0	30	4	11.76	-	-	-	A	75136706	C	A	75136706	3	1	817	1	0	0	0	0	1	0	0	0	8219	797	28	4	767	4	KIAA0317	14	75136706	Missense_Mutation	SNP	C	TCGA-E2-A1LI-01A-12D-A159-09		75136706	32212834	11	68954										
NARG2	0	genome.wustl.edu	37	chr15	60720860	60720860	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	2	0.479717513739179	2.55	1.7	5.1	1	1	0	aagaatcttctgctgcatgaGataacaagtaggaaccctcc	8	10	2	2			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	15	60720860	60720860	G	C	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	missense	c.2588	p.S863C	1.000	pfam_NARG2_C	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	33	0	0	15	6	28.57	-	-	-	C	60720860	G	C	60720860	3	2	817	1	0	0	0	0	1	0	0	0	10241	942	33	2	368	2	NARG2	15	60720860	Missense_Mutation	SNP	G	TCGA-E2-A1LI-01A-12D-A159-09		60720860	41810532	12	68955										
CHI3L1	0	genome.wustl.edu	37	chr1	203154343	203154344	+	Frame_Shift_Ins	INS	-	-	C													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gtgttgagcatgccgtagagINScgtcacatcattccactccc							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	203154343	203154344	-	C	INS	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.226_225	p.L75fs	0.986:0.005	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	114	0	0	33	46	58.23	-	-	-	C	203154344	-	C	203154343	7	5	818	1	0	1	1	0	0	0	0	0	3369	971	34	0	957	0	CHI3L1	1	203154343	Frame_Shift_Ins	INS	-	TCGA-E2-A1LK-01A-21D-A14G-09		203154343	46096278	1	68956										
ABCB10	0	genome.wustl.edu	37	chr1	229676385	229676385	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	accagcccgggcgaatgcctCtttccttgctaactgcatta	8	14	1	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	229676385	229676385	C	G	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.1171	p.E391Q	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	209	1	0.47	109	27	19.85	-	-	-	G	229676385	C	G	229676385	3	3	818	1	0	0	0	0	1	0	0	0	41	922	32	2	1081	2	ABCB10	1	229676385	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	26522042	229676385	19574236	2	68957										
ABCB10	0	genome.wustl.edu	37	chr1	229678083	229678083	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gacactggaggcaccacgctCaaaacaaaggtggccagatt	11	11	1	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	229678083	229678083	C	G	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.957	p.L319F	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	129	0	0	46	14	22.95	-	-	-	G	229678083	C	G	229678083	3	3	818	1	0	0	0	0	1	0	0	0	41	825	29	2	1299	2	ABCB10	1	229678083	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	1698	229678083	19572538	3	68958										
EDAR	0	genome.wustl.edu	37	chr2	109547441	109547441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	accaggacggggagccagggCgtctgcgtgcagtcccccac	15	15	1	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	109547441	109547441	C	T	SNP	EDAR	ENST00000376651	human	ensembl	69_37n	-1	known	silent	c.30	p.T10	0.019	NULL	pfam_Death,superfamily_DEATH-like	-	no_errors	EDAR	HGNC	ENSG00000135960	68	0	0	7	13	65	-	-	-	T	109547441	C	T	109547441	2	4	818	1	0	0	0	0	0	0	0	1	4940	755	27	1		1	EDAR	2	109547441	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09		109547441	133651932	4	68959										
CNTNAP5	0	genome.wustl.edu	37	chr2	125405531	125405531	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	aggtcccgcctgctcaacacGccgggtaaggcctctgcatg	12	15	2	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	125405531	125405531	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	silent	c.2070	p.T690	0.037	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	50	0	0	8	11	57.89	-	-	-	A	125405531	G	A	125405531	2	1	818	1	0	0	0	0	0	0	0	1	3680	1074	38	1		1	CNTNAP5	2	125405531	Silent	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	15858090	125405531	117793842	5	68960										
TTN	0	genome.wustl.edu	37	chr2	179581989	179581989	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ggcgaatctctcggttatctTtggcccaagtgattttgatt	10	8	2	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	179581989	179581989	T	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.21740	p.K7247T	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	100	0	0	15	29	65.91	-	-	-	G	179581989	T	G	179581989	3	3	818	1	0	0	0	0	1	0	0	0	16832	1841	64	5	79157	5	TTN	2	179581989	Missense_Mutation	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09	54176458	179581989	63617384	6	68961										
GRM7	0	genome.wustl.edu	37	chr3	7188164	7188164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ccagattagttatgcatcaaCggcacccgagctaagtgatg	10	10	1	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	7188164	7188164	C	T	SNP	GRM7	ENST00000402647	human	ensembl	69_37n	1	known	missense	c.545	p.T182M	0.999	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	95	0	0	34	22	39.29	-	-	-	T	7188164	C	T	7188164	3	4	818	1	0	0	0	0	1	0	0	0	6853	536	19	1	551	1	GRM7	3	7188164	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09		7188164	190834266	7	68962										
XPC	0	genome.wustl.edu	37	chr3	14190419	14190419	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ggctcagcaagtcgggctttCcgagcacggttagaaaagcc	13	11	1	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	14190419	14190419	C	T	SNP	XPC	ENST00000285021	human	ensembl	69_37n	-1	known	silent	c.2145	p.R715	0.990	pfam_Rad4_beta-hairpin_dom2,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	80	0	0	28	9	24.32	-	-	-	T	14190419	C	T	14190419	2	4	818	1	0	0	0	0	0	0	0	1	17538	842	30	2		2	XPC	3	14190419	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	7002255	14190419	183832011	8	68963										
UBA7	0	genome.wustl.edu	37	chr3	49845239	49845239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ccagatgtaggtagctgtggCgaaaggcactacgaggccgt	15	9	0	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	49845239	49845239	C	T	SNP	UBA7	ENST00000333486	human	ensembl	69_37n	-1	known	missense	c.2645	p.R882H	1.000	pfam_Ub-activating_enz_e1_C,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179	115	0	0	45	17	27.42	-	-	-	T	49845239	C	T	49845239	3	4	818	1	0	0	0	0	1	0	0	0	16930	768	27	1	409	1	UBA7	3	49845239	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	35654820	49845239	148177191	9	68964										
CACNA1D	0	genome.wustl.edu	37	chr3	53804500	53804500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	cacctttttccgtcttttccGagtgatgcgattggtgaagc	10	10	1	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	53804500	53804500	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	1	known	missense	c.4025	p.R1342Q	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	106	0	0	56	36	39.13	-	-	-	A	53804500	G	A	53804500	3	1	818	1	0	0	0	0	1	0	0	0	2566	1058	37	1	4263	1	CACNA1D	3	53804500	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	3959261	53804500	144217930	10	68965										
GRK7	0	genome.wustl.edu	37	chr3	141499486	141499486	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tggacatgagccgggtgatcTtttactcggcccagatagcc	12	11	1	3			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	141499486	141499486	T	C	SNP	GRK7	ENST00000264952	human	ensembl	69_37n	1	known	missense	c.883	p.F295L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK7	HGNC	ENSG00000114124	124	0	0	49	30	37.97	-	-	-	C	141499486	T	C	141499486	3	2	818	1	0	0	0	0	1	0	0	0	6845	1609	56	5	889	5	GRK7	3	141499486	Missense_Mutation	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09	87694986	141499486	56522944	11	68966										
GABRA4	0	genome.wustl.edu	37	chr4	46967096	46967096	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ccatttgaatattggtgaaaTagttgacagcagcaaactcg	9	7	0	3			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	4	46967096	46967096	T	G	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1025	p.Y342S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	186	1	0.53	68	68	49.64	-	-	-	G	46967096	T	G	46967096	3	3	818	1	0	0	0	0	1	0	0	0	6212	1406	49	5	647	5	GABRA4	4	46967096	Missense_Mutation	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09		46967096	144187180	12	68967										
EPHA5	0	genome.wustl.edu	37	chr4	66286192	66286192	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ttgatttcatactctaggatGattccattgggacgatctgg	10	7	3	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	4	66286192	66286192	G	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	silent	c.1494	p.I498	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	270	0	0	146	32	17.98	-	-	-	T	66286192	G	T	66286192	2	4	818	1	0	0	0	0	0	0	0	1	5207	1280	45	2		2	EPHA5	4	66286192	Silent	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	19319096	66286192	124868084	13	68968										
APC	0	genome.wustl.edu	37	chr5	112154710	112154710	+	Frame_Shift_Del	DEL	G	G	-													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	atgcttggtactcatgataaGgatgatatgtcgcgaacttt							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	5	112154710	112154710	G	-	DEL	APC	ENST00000257430	human	ensembl	69_37n	1	known	frame_shift_del	c.981	p.D328fs	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	100	1	0.98	6	23	76.67	-	-	-	-	112154710	G	-	112154710	7	5	818	1	0	1	0	1	0	0	0	0	764	991	35	0	1015	0	APC	5	112154710	Frame_Shift_Del	DEL	G	TCGA-E2-A1LK-01A-21D-A14G-09		112154710	68760550	14	68969										
SERAC1	0	genome.wustl.edu	37	chr6	158535820	158535821	+	Frame_Shift_Del	DEL	CC	CC	-													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ctttatgacaaaaagtattaCccttgctgagttctttgact							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	6	158535820	158535821	CC	-	DEL	SERAC1	ENST00000367104	human	ensembl	69_37n	-1	known	frame_shift_del	c.1685_1684	p.D562fs	1.000:0.904	NULL	pfam_PGAP1-like,superfamily_ARM-type_fold	-	no_errors	SERAC1	HGNC	ENSG00000122335	139	0	0	99	24	19.51	-	-	-	-	158535821	CC	-	158535820	7	5	818	1	0	1	0	1	0	0	0	0	14162	521	18	0	291	0	SERAC1	6	158535820	Frame_Shift_Del	DEL	CC	TCGA-E2-A1LK-01A-21D-A14G-09		158535820	12579247	15	68970										
C6orf70	0	genome.wustl.edu	37	chr6	170159085	170159085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tgaatgtgctaaaagtcttcGttggctctccgtgtggtctc	11	9	3	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	6	170159085	170159085	G	A	SNP	C6orf70	ENST00000366773	human	ensembl	69_37n	1	known	missense	c.529	p.V177I	0.007	NULL	NULL	-	no_errors	C6orf70	HGNC	ENSG00000130023	182	1	0.55	74	42	36.21	-	-	-	A	170159085	G	A	170159085	3	1	818	1	0	0	0	0	1	0	0	0	2392	1145	40	1	551	1	C6orf70	6	170159085	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	11623265	170159085	955982	16	68971										
XKR4	0	genome.wustl.edu	37	chr8	56435983	56435983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gctggcacttcttcaccatcGccgccagggtcatcacgttt	9	15	4	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	8	56435983	56435983	G	A	SNP	XKR4	ENST00000327381	human	ensembl	69_37n	1	known	missense	c.1150	p.A384T	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579	412	1	0.24	635	80	11.14	-	-	-	A	56435983	G	A	56435983	3	1	818	1	0	0	0	0	1	0	0	0	17530	1087	38	1	1160	1	XKR4	8	56435983	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09		56435983	89928039	17	68972										
PLEC	0	genome.wustl.edu	37	chr8	144995814	144995814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gcctccagcaggatgagggcCgtgccgggactcagcagctg	16	13	1	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	8	144995814	144995814	C	T	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.8586	p.T2862	0.051	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	46	0	0	76	9	10.59	-	-	-	T	144995814	C	T	144995814	2	4	818	1	0	0	0	0	0	0	0	1	12126	639	23	1		1	PLEC	8	144995814	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	88559831	144995814	1368208	18	68973										
DIP2C	0	genome.wustl.edu	37	chr10	395377	395377	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tgcagctgcacgcaggtcagCgagttcgctatcgcaccctg	12	14	1	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	395377	395377	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.3003	p.S1001	0.018	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	86	0	0	69	13	15.85	-	-	-	T	395377	C	T	395377	2	4	818	1	0	0	0	0	0	0	0	1	4565	755	27	1		1	DIP2C	10	395377	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09		395377	135139370	19	68974										
LARP4B	0	genome.wustl.edu	37	chr10	875659	875659	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	aaaagttttgacttcttctcGaaggtatttgtaagcctaag	8	6	2	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	875659	875659	G	A	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	nonsense	c.877	p.R293*	0.975	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	96	0	0	91	41	30.83	-	-	-	A	875659	G	A	875659	4	1	818	1	0	0	0	0	0	1	0	0	8685	1066	37	1	1375	1	LARP4B	10	875659	Nonsense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	480282	875659	134659088	20	68975										
C11orf49	0	genome.wustl.edu	37	chr11	47182744	47182744	+	Frame_Shift_Del	DEL	A	A	-													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tgaagagctggaacggctgtAagtgtcaagtgggaggatac							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	47182744	47182744	A	-	DEL	C11orf49	ENST00000395460	human	ensembl	69_37n	1	known	frame_shift_del	c.824	p.*275fs	1.000	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179	76	0	0	8	16	64	-	-	-	-	47182744	A	-	47182744	7	5	818	1	0	1	0	1	0	0	0	0	1656	369	13	0	854	0	C11orf49	11	47182744	Frame_Shift_Del	DEL	A	TCGA-E2-A1LK-01A-21D-A14G-09		47182744	87823772	21	68976										
PGA3	0	genome.wustl.edu	37	chr11	60975059	60975059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ctacggcaccggcagcatgaCaggcatcctcggatacgaca	11	14	0	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	60975059	60975059	C	T	SNP	PGA3	ENST00000325558	human	ensembl	69_37n	1	known	missense	c.428	p.T143I	0.292	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA3	HGNC	ENSG00000229859	310	0	0	141	42	22.95	-	-	-	T	60975059	C	T	60975059	3	4	818	1	0	0	0	0	1	0	0	0	11845	478	17	4	442	4	PGA3	11	60975059	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	13792315	60975059	74031457	22	68977										
DGAT2	0	genome.wustl.edu	37	chr11	75501262	75501262	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gcagtgccatcctcatgtacAtattctgcactgattgctgg	9	11	2	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	75501262	75501262	A	G	SNP	DGAT2	ENST00000228027	human	ensembl	69_37n	1	known	missense	c.280	p.I94V	0.997	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2	HGNC	ENSG00000062282	179	0	0	79	32	28.83	-	-	-	G	75501262	A	G	75501262	3	3	818	1	0	0	0	0	1	0	0	0	4494	217	8	5	290	5	DGAT2	11	75501262	Missense_Mutation	SNP	A	TCGA-E2-A1LK-01A-21D-A14G-09	14526203	75501262	59505254	23	68978										
AQP11	0	genome.wustl.edu	37	chr11	77301600	77301600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gctgcacttccaggaagtccGaaccaagcttcgtatccacc	8	15	0	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	77301600	77301600	G	A	SNP	AQP11	ENST00000313578	human	ensembl	69_37n	1	known	missense	c.563	p.R188Q	0.002	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_11	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_11,prints_MIP	-	no_errors	AQP11	HGNC	ENSG00000178301	123	0	0	45	52	53.61	-	-	-	A	77301600	G	A	77301600	3	1	818	1	0	0	0	0	1	0	0	0	825	1058	37	1	565	1	AQP11	11	77301600	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	1800338	77301600	57704916	24	68979										
CAPRIN2	0	genome.wustl.edu	37	chr12	30872133	30872133	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tttggagaagctagtgaagaCggttgcttgcctgggggaat	16	5	0	3			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	12	30872133	30872133	C	A	SNP	CAPRIN2	ENST00000251071	human	ensembl	69_37n	-1	known	silent	c.2175	p.P725	0.002	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	187	1	0.53	43	54	55.67	-	-	-	A	30872133	C	A	30872133	2	1	818	1	0	0	0	0	0	0	0	1	2661	523	19	3		3	CAPRIN2	12	30872133	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09		30872133	102979762	25	68980										
USP8	0	genome.wustl.edu	37	chr15	50741617	50741617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gattatttccattcaatactTggacctggaaacatcaaaaa	5	8	2	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	15	50741617	50741617	T	G	SNP	USP8	ENST00000559242	human	ensembl	69_37n	1	known	missense	c.125	p.L42W	1.000	NULL	pfam_DUF1873	-	no_errors	USP8	HGNC	ENSG00000138592	109	0	0	34	30	46.88	-	-	-	G	50741617	T	G	50741617	3	3	818	1	0	0	0	0	1	0	0	0	17186	1799	63	5	280	5	USP8	15	50741617	Missense_Mutation	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09		50741617	51789775	26	68981										
GTF3C1	0	genome.wustl.edu	37	chr16	27497439	27497439	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tctggtcggcttcatcatggTagcgcagccttttgcttttt	10	10	3	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	16	27497439	27497439	T	G	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.3737	p.Y1246S	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	134	0	0	71	13	15.48	-	-	-	G	27497439	T	G	27497439	3	3	818	1	0	0	0	0	1	0	0	0	6923	1638	57	5	2648	5	GTF3C1	16	27497439	Missense_Mutation	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09		27497439	62857314	27	68982										
ALOX15	0	genome.wustl.edu	37	chr17	4535496	4535496	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ctggcccaggtgcacagaggCgtgttggccggtgcaggtga	18	10	0	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	4535496	4535496	C	T	SNP	ALOX15	ENST00000545513	human	ensembl	69_37n	-1	known	missense	c.1687	p.A563T	0.999	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX15	HGNC	ENSG00000161905	128	0	0	25	15	37.5	-	-	-	T	4535496	C	T	4535496	3	4	818	1	0	0	0	0	1	0	0	0	538	768	27	1	379	1	ALOX15	17	4535496	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09		4535496	76659714	28	68983										
UBTF	0	genome.wustl.edu	37	chr17	42290592	42290592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ctccactgccttacctgaatCgggccaggtttcgctcgaac	9	15	0	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	42290592	42290592	C	T	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	missense	c.533	p.R178Q	0.993	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	109	1	0.91	39	24	38.1	-	-	-	T	42290592	C	T	42290592	3	4	818	1	0	0	0	0	1	0	0	0	17006	884	31	1	1825	1	UBTF	17	42290592	Missense_Mutation	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	37755096	42290592	38904618	29	68984										
RPS6KB1	0	genome.wustl.edu	37	chr17	57987923	57987923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	acttttaacatatttttcagGgtcagttaaatgaaagcatg	7	5	2	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	57987923	57987923	G	A	SNP	RPS6KB1	ENST00000225577	human	ensembl	69_37n	1	known	missense	c.142	p.G48S	1.000	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443	202	0	0	78	70	47.3	-	-	-	A	57987923	G	A	57987923	3	1	818	1	0	0	0	0	1	0	0	0	13742	1246	43	4	148	4	RPS6KB1	17	57987923	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	15697331	57987923	23207287	30	68985										
MMP9	0	genome.wustl.edu	37	chr20	44637580	44637580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ctcaccatgagcctctggcaGcccctggtcctggtgctcct	10	17	2	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	20	44637580	44637580	G	A	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	silent	c.15	p.Q5	0.192	NULL	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	70	0	0	34	7	16.67	-	-	-	A	44637580	G	A	44637580	2	1	818	1	0	0	0	0	0	0	0	1	9741	962	34	4		4	MMP9	20	44637580	Silent	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09		44637580	18387940	31	68986										
LIMK2	0	genome.wustl.edu	37	chr22	31672776	31672777	+	Frame_Shift_Ins	INS	-	-	C													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ccacgcatctactttcagagINSccccccccggggccgcagga							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	31672776	31672777	-	C	INS	LIMK2	ENST00000340552	human	ensembl	69_37n	1	putative	frame_shift_ins	c.1711_1712	p.G574fs	0.995:0.996	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	23	0	0	11	3	21.43	-	-	-	C	31672777	-	C	31672776	7	5	818	1	0	1	1	0	0	0	0	0	8857	985	34	0	1893	0	LIMK2	22	31672776	Frame_Shift_Ins	INS	-	TCGA-E2-A1LK-01A-21D-A14G-09		31672776	19631790	32	68987										
CDC42EP1	0	genome.wustl.edu	37	chr22	37964206	37964206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ggttccttcccctctgagccCgggcttcgccgctctgactc	10	18	2	2			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	37964206	37964206	C	T	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	silent	c.555	p.P185	0.000	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	47	0	0	10	11	52.38	-	-	-	T	37964206	C	T	37964206	2	4	818	1	0	0	0	0	0	0	0	1	3104	639	23	1		1	CDC42EP1	22	37964206	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	6291430	37964206	13340360	33	68988										
EFCAB6	0	genome.wustl.edu	37	chr22	44004466	44004466	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	atgccattgccctcattatcGgtttctagaaaattctacaa	5	10	3	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	44004466	44004466	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	silent	c.2577	p.T859	0.036	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	96	0	0	37	38	50.67	-	-	-	A	44004466	G	A	44004466	2	1	818	1	0	0	0	0	0	0	0	1	4974	1103	39	1		1	EFCAB6	22	44004466	Silent	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	6040260	44004466	7300100	34	68989										
BRD1	0	genome.wustl.edu	37	chr22	50192705	50192705	+	Frame_Shift_Del	DEL	C	C	-													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	cgagcgcgctccaggtcgtgCcgcagccgctgccagtactt							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	50192705	50192705	C	-	DEL	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	frame_shift_del	c.1587	p.H530fs	0.966	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	97	0	0	20	8	28.57	-	-	-	-	50192705	C	-	50192705	7	5	818	1	0	1	0	1	0	0	0	0	1509	726	26	0	1629	0	BRD1	22	50192705	Frame_Shift_Del	DEL	C	TCGA-E2-A1LK-01A-21D-A14G-09	6188239	50192705	1111861	35	68990										
CXorf38	0	genome.wustl.edu	37	chrX	40506283	40506283	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	gccacctcccaggcgtccacGggccagcggcccggccggca	14	20	0	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	40506283	40506283	G	T	SNP	CXorf38	ENST00000327877	human	ensembl	69_37n	-1	known	silent	c.327	p.P109	0.001	NULL	NULL	-	no_errors	CXorf38	HGNC	ENSG00000185753	44	0	0	13	8	38.1	-	-	-	T	40506283	G	T	40506283	2	4	818	1	0	0	0	0	0	0	0	1	4138	1103	39	3		3	CXorf38	23	40506283	Silent	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09		40506283	114764277	36	68991										
KDM6A	0	genome.wustl.edu	37	chrX	44894229	44894232	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tgcactttgtccaatgctgaAagtaagtattattaagtact							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	44894229	44894232	AAGT	-	DEL	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_del	c.618_619	p.E206fs	1.000:1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	390	1	0.26	172	84	32.56	-	-	-	-	44894232	AAGT	-	44894229	7	5	818	1	0	1	0	1	0	0	0	0	8190	28	1	0	644	0	KDM6A	23	44894229	Frame_Shift_Del	DEL	AAGT	TCGA-E2-A1LK-01A-21D-A14G-09	4387946	44894229	110376331	37	68992										
HDAC6	0	genome.wustl.edu	37	chrX	48675747	48675747	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tcccaggttctgaatggtgcTgctgtggtgcgtcccccagg	14	12	1	1			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	48675747	48675747	T	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	silent	c.1848	p.A616	0.839	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	132	1	0.75	46	13	22.03	-	-	-	A	48675747	T	A	48675747	2	1	818	1	0	0	0	0	0	0	0	1	7062	1567	55	5		5	HDAC6	23	48675747	Silent	SNP	T	TCGA-E2-A1LK-01A-21D-A14G-09	3781518	48675747	106594813	38	68993										
GLUD2	0	genome.wustl.edu	37	chrX	120181770	120181770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	agggcttcttcgatcgcggcGccagcatcgtggaggacaag	15	11	1	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	120181770	120181770	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	69_37n	1	known	missense	c.232	p.A78T	1.000	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890	71	0	0	9	9	50	-	-	-	A	120181770	G	A	120181770	3	1	818	1	0	0	0	0	1	0	0	0	6529	1087	38	1	234	1	GLUD2	23	120181770	Missense_Mutation	SNP	G	TCGA-E2-A1LK-01A-21D-A14G-09	71506023	120181770	35088790	39	68994										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	138	0	0	62	7	10.14	-	-	-	AA	135960147	-	AA	135960146	7	5	818	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-E2-A1LK-01A-21D-A14G-09	15778376	135960146	19310414	40	68995										
MTCP1NB	0	genome.wustl.edu	37	chrX	154292281	154292281	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	2	0.959564883172599	0.805434782608696	9.2625	0	0.4	0.991179622791967	0	tcacaggcttgcttctggcaCggatccttctgcggcatatc	10	13	3	0			TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	154292281	154292281	C	T	SNP	MTCP1NB	ENST00000369479	human	ensembl	69_37n	-1	known	silent	c.18	p.P6	0.998	pfam_MTCP1,superfamily_MTCP1	pfam_MTCP1,superfamily_MTCP1	-	no_errors	MTCP1NB	HGNC	ENSG00000182712	81	0	0	44	6	12	-	-	-	T	154292281	C	T	154292281	2	4	818	1	0	0	0	0	0	0	0	1	9988	523	19	1		1	MTCP1NB	23	154292281	Silent	SNP	C	TCGA-E2-A1LK-01A-21D-A14G-09	18332135	154292281	978279	41	68996										
SNX17	0	genome.wustl.edu	37	chr2	27598788	27598788	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	gcctggaactggcttttgaaTacctcatgagcaaggaccgg	12	10	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	27598788	27598788	T	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	missense	c.1054	p.Y352N	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	37	0	0	35	6	14.63	-	-	-	A	27598788	T	A	27598788	3	1	819	1	0	0	0	0	1	0	0	0	14977	1406	49	5	1096	5	SNX17	2	27598788	Missense_Mutation	SNP	T	TCGA-E2-A1LL-01A-11D-A142-09		27598788	215600585	1	68997										
SPHKAP	0	genome.wustl.edu	37	chr2	228883047	228883047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tgatgagggctttttgtatcCtctcctgctattcctttcag	8	10	2	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	228883047	228883047	C	G	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.2523	p.E841D	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	56	0	0	31	9	22.5	-	-	-	G	228883047	C	G	228883047	3	3	819	1	0	0	0	0	1	0	0	0	15139	680	24	4	2603	4	SPHKAP	2	228883047	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09	201284259	228883047	14316326	2	68998										
LRRFIP1	0	genome.wustl.edu	37	chr2	238643948	238643948	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	aggcagcttcggtgggacccGacggggcagcacctccggct	16	14	0	0			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	238643948	238643948	G	A	SNP	LRRFIP1	ENST00000308482	human	ensembl	69_37n	1	putative	missense	c.527	p.R176Q	0.189	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	24	0	0	25	9	26.47	-	-	-	A	238643948	G	A	238643948	3	1	819	1	0	0	0	0	1	0	0	0	9093	1058	37	1	635	1	LRRFIP1	2	238643948	Missense_Mutation	SNP	G	TCGA-E2-A1LL-01A-11D-A142-09	9760901	238643948	4555425	3	68999										
PLOD2	0	genome.wustl.edu	37	chr3	145809641	145809641	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	caaagagtgcagccattatcCtgtgtccatgaattgggtac	10	9	0	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	145809641	145809641	C	T	SNP	PLOD2	ENST00000282903	human	ensembl	69_37n	-1	known	silent	c.825	p.Q275	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	40	0	0	45	7	13.46	-	-	-	T	145809641	C	T	145809641	2	4	819	1	0	0	0	0	0	0	0	1	12176	680	24	4		4	PLOD2	3	145809641	Silent	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		145809641	52212789	4	69000										
LRRC14B	0	genome.wustl.edu	37	chr5	195276	195276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	aagttcaaccagcagaaataCgacgagatcgccgaggagct	11	10	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	195276	195276	C	T	SNP	LRRC14B	ENST00000328278	human	ensembl	69_37n	1	novel	silent	c.1353	p.Y451	0.001	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028	22	0	0	23	12	34.29	-	-	-	T	195276	C	T	195276	2	4	819	1	0	0	0	0	0	0	0	1	9035	547	19	1		1	LRRC14B	5	195276	Silent	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		195276	180719984	5	69001										
SENP6	0	genome.wustl.edu	37	chr6	76425115	76425115	+	Frame_Shift_Del	DEL	T	T	-													0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tttcagaatccaattctcagTtttgaactacctatgaattt							TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	6	76425115	76425115	T	-	DEL	SENP6	ENST00000370014	human	ensembl	69_37n	1	known	frame_shift_del	c.3144	p.F1049fs	1.000	pfam_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	46	0	0	8	13	61.9	-	-	-	-	76425115	T	-	76425115	7	5	819	1	0	1	0	1	0	0	0	0	14138	1722	60	0	3238	0	SENP6	6	76425115	Frame_Shift_Del	DEL	T	TCGA-E2-A1LL-01A-11D-A142-09		76425115	94689952	6	69002										
SYNE1	0	genome.wustl.edu	37	chr6	152749432	152749432	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tgctgctgtagagccgcagcCtcctgaacacaggaatctct	10	13	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	6	152749432	152749432	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.4884	p.E1628D	0.012	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	49	0	0	18	4	18.18	-	-	-	G	152749432	C	G	152749432	3	3	819	1	0	0	0	0	1	0	0	0	15537	680	24	4	22022	4	SYNE1	6	152749432	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09	76324317	152749432	18365635	7	69003										
HTR5A	0	genome.wustl.edu	37	chr7	154863345	154863345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tctcacccatatccgaagctGtggaggtgggtatctcagca	11	11	2	0			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	154863345	154863345	G	T	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	1	known	missense	c.736	p.V246L	0.458	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_5HT5A_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	23	0	0	18	4	18.18	-	-	-	T	154863345	G	T	154863345	3	4	819	1	0	0	0	0	1	0	0	0	7504	1377	48	4	738	4	HTR5A	7	154863345	Missense_Mutation	SNP	G	TCGA-E2-A1LL-01A-11D-A142-09		154863345	4275318	8	69004										
DNAI1	0	genome.wustl.edu	37	chr9	34500839	34500839	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	ccgtcactgccctctgctggTaagtataggcattgcagcaa	10	12	2	0			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	9	34500839	34500839	T	G	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	splice_site	c.1019+2	e11+2	1.000	-	-	-	no_errors	DNAI1	HGNC	ENSG00000122735	26	0	0	26	14	35	-	-	-	G	34500839	T	G	34500839	5	3	819	1	0	0	0	0	0	0	1	0	4644	1652	57	5	1063	5	DNAI1	9	34500839	Splice_Site	SNP	T	TCGA-E2-A1LL-01A-11D-A142-09		34500839	106712592	9	69005										
MMRN2	0	genome.wustl.edu	37	chr10	88704043	88704043	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	ccctgtttgatttgcttccaTcactgcagctgtgaggttac	9	11	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	88704043	88704043	T	A	SNP	MMRN2	ENST00000372027	human	ensembl	69_37n	-1	known	missense	c.631	p.M211L	0.000	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269	33	0	0	13	15	53.57	-	-	-	A	88704043	T	A	88704043	3	1	819	1	0	0	0	0	1	0	0	0	9743	1435	50	5	2230	5	MMRN2	10	88704043	Missense_Mutation	SNP	T	TCGA-E2-A1LL-01A-11D-A142-09		88704043	46830704	10	69006										
METTL10	0	genome.wustl.edu	37	chr10	126453973	126453973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tcacttaccttcactgaattCatttagcaactcttccttgg	4	12	4	1			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	126453973	126453973	C	G	SNP	METTL10	ENST00000368836	human	ensembl	69_37n	-1	known	missense	c.604	p.E202Q	0.963	NULL	pfam_Methyltransf_11,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_(Gua-N-7)_MeTrfase	-	no_errors	METTL10	HGNC	ENSG00000203791	58	0	0	45	6	11.76	-	-	-	G	126453973	C	G	126453973	3	3	819	1	0	0	0	0	1	0	0	0	9565	835	29	2	283	2	METTL10	10	126453973	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09	37749930	126453973	9080774	11	69007										
C10orf91	0	genome.wustl.edu	37	chr10	134261527	134261527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	gcctgtgggaacaggcgtctGttagtcagggtttcaggaat	15	7	3	0			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	134261527	134261527	G	A	SNP	C10orf91	ENST00000321248	human	ensembl	69_37n	1	known	missense	c.400	p.V134I	0.004	NULL	NULL	-	no_errors	C10orf91	HGNC	ENSG00000180066	19	0	0	17	11	39.29	-	-	-	A	134261527	G	A	134261527	3	1	819	1	0	0	0	0	1	0	0	0	1634	1377	48	4	410	4	C10orf91	10	134261527	Missense_Mutation	SNP	G	TCGA-E2-A1LL-01A-11D-A142-09	7807554	134261527	1273220	12	69008										
TRPC6	0	genome.wustl.edu	37	chr11	101454133	101454133	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	tcttctcccagctccgagtcCatgagcagatagtcctggct	9	14	2	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	11	101454133	101454133	C	G	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	missense	c.102	p.M34I	1.000	NULL	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	14	0	0	14	4	22.22	-	-	-	G	101454133	C	G	101454133	3	3	819	1	0	0	0	0	1	0	0	0	16679	594	21	4	2745	4	TRPC6	11	101454133	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		101454133	33552383	13	69009										
ARL6IP4	0	genome.wustl.edu	37	chr12	123466575	123466575	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	aggaggagtgggatgcccggCagagcatcatccgcaaggtg	17	9	1	1			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	12	123466575	123466575	C	G	SNP	ARL6IP4	ENST00000315580	human	ensembl	69_37n	1	known	missense	c.910	p.Q304E	1.000	pfam_Nucl_RNA-splicing_assoc_SR-25	pfam_Nucl_RNA-splicing_assoc_SR-25	-	no_errors	ARL6IP4	HGNC	ENSG00000182196	15	0	0	16	5	23.81	-	-	-	G	123466575	C	G	123466575	3	3	819	1	0	0	0	0	1	0	0	0	947	711	25	4	924	4	ARL6IP4	12	123466575	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		123466575	10385320	14	69010										
DLGAP5	0	genome.wustl.edu	37	chr14	55621420	55621420	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	ggcattttctggtgatgtagTttgttgtggaatgcccatct	12	6	2	1			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	14	55621420	55621420	T	C	SNP	DLGAP5	ENST00000247191	human	ensembl	69_37n	-1	known	missense	c.1978	p.T660A	0.000	NULL	pfam_GKAP	-	no_errors	DLGAP5	HGNC	ENSG00000126787	126	1	0.79	44	14	24.14	-	-	-	C	55621420	T	C	55621420	3	2	819	1	0	0	0	0	1	0	0	0	4599	1725	60	5	677	5	DLGAP5	14	55621420	Missense_Mutation	SNP	T	TCGA-E2-A1LL-01A-11D-A142-09		55621420	51728120	15	69011										
SPTB	0	genome.wustl.edu	37	chr14	65239994	65239994	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	agaggccactagctccttttCtgaaatccactgctccaggt	8	13	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	14	65239994	65239994	C	G	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.5122	p.E1708Q	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	36	0	0	46	7	13.21	-	-	-	G	65239994	C	G	65239994	3	3	819	1	0	0	0	0	1	0	0	0	15209	922	32	2	1981	2	SPTB	14	65239994	Missense_Mutation	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09	9618574	65239994	42109546	16	69012										
TRPM1	0	genome.wustl.edu	37	chr15	31294084	31294084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	ctttttttcttctgctgtcaTtccagacacaattactaagc	4	11	3	1			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	31294084	31294084	T	C	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.4870	p.M1624V	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	53	0	0	71	24	25.26	-	-	-	C	31294084	T	C	31294084	3	2	819	1	0	0	0	0	1	0	0	0	16681	1493	52	5	62	5	TRPM1	15	31294084	Missense_Mutation	SNP	T	TCGA-E2-A1LL-01A-11D-A142-09		31294084	71237308	17	69013										
MGAT5B	0	genome.wustl.edu	37	chr17	74902194	74902194	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	cctaggggagatggtgcagtGggcggacattctgactgcac	16	9	1	2			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	17	74902194	74902194	G	A	SNP	MGAT5B	ENST00000428789	human	ensembl	69_37n	1	known	nonsense	c.983	p.W328*	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MGAT5B	HGNC	ENSG00000167889	26	0	0	21	11	34.38	-	-	-	A	74902194	G	A	74902194	4	1	819	1	0	0	0	0	0	1	0	0	9620	1357	47	4	1081	4	MGAT5B	17	74902194	Nonsense_Mutation	SNP	G	TCGA-E2-A1LL-01A-11D-A142-09		74902194	6293016	18	69014										
RYR1	0	genome.wustl.edu	37	chr19	38959725	38959725	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	ttcaccctcaatggcgaggtCctcatgtctgactcaggctc	9	14	5	1			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	19	38959725	38959725	C	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.3501	p.V1167	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	34	0	0	31	6	16.22	-	-	-	A	38959725	C	A	38959725	2	1	819	1	0	0	0	0	0	0	0	1	13854	842	30	2		2	RYR1	19	38959725	Silent	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		38959725	20169258	19	69015										
SUN5	0	genome.wustl.edu	37	chr20	31572971	31572971	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	gcccccaggaacacctcctcCttgggggagccctccatgcc	10	19	0	0			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	20	31572971	31572971	C	T	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	silent	c.918	p.K306	0.031	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	28	0	0	35	8	18.6	-	-	-	T	31572971	C	T	31572971	2	4	819	1	0	0	0	0	0	0	0	1	15485	680	24	4		4	SUN5	20	31572971	Silent	SNP	C	TCGA-E2-A1LL-01A-11D-A142-09		31572971	31452549	20	69016										
CNKSR2	0	genome.wustl.edu	37	chrX	21666975	21666975	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.142857142857143	3	0.585758357762327	1.65384615384615	3.07142857142857	0	0.1	0.5224358974359	0	gcagagaagaaaagttaggaGactcattgcaagatttatac	10	5	1	4			TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	X	21666975	21666975	G	C	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.2719	p.D907H	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	24	0	0	13	7	35	-	-	-	C	21666975	G	C	21666975	3	2	819	1	0	0	0	0	1	0	0	0	3637	942	33	2	2810	2	CNKSR2	23	21666975	Missense_Mutation	SNP	G	TCGA-E2-A1LL-01A-11D-A142-09		21666975	133603585	21	69017										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17991021	17991021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gtccgcaccctgttgagcctGgaggatgccgtgtgggccag	16	12	0	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	17991021	17991021	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	silent	c.2940	p.L980	1.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	60	0	0	11	7	38.89	-	-	-	A	17991021	G	A	17991021	2	1	820	1	0	0	0	0	0	0	0	1	897	1335	47	4		4	ARHGEF10L	1	17991021	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		17991021	231259600	1	69018										
ASPM	0	genome.wustl.edu	37	chr1	197102711	197102711	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	attctctattcccaaaagaaGagtagcagcatttactgggt	8	8	1	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	197102711	197102711	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.2188	p.L730I	0.926	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	72	0	0	51	17	24.64	-	-	-	T	197102711	G	T	197102711	3	4	820	1	0	0	0	0	1	0	0	0	1060	942	33	2	8337	2	ASPM	1	197102711	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	179111690	197102711	52147910	2	69019										
PIGR	0	genome.wustl.edu	37	chr1	207104865	207104865	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ttttgccttcttgggttcttTggtctctgtggtgctctcag	11	9	4	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	207104865	207104865	T	C	SNP	PIGR	ENST00000356495	human	ensembl	69_37n	-1	known	missense	c.2176	p.K726E	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PIGR	HGNC	ENSG00000162896	479	1	0.21	96	122	55.96	-	-	-	C	207104865	T	C	207104865	3	2	820	1	0	0	0	0	1	0	0	0	11971	1821	63	5	126	5	PIGR	1	207104865	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	10002154	207104865	42145756	3	69020										
C4BPA	0	genome.wustl.edu	37	chr1	207288791	207288791	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cagacacccaggagagttacGtaatgggcaagtagagatta	12	7	0	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	1	207288791	207288791	G	A	SNP	C4BPA	ENST00000367070	human	ensembl	69_37n	1	known	missense	c.359	p.R120H	0.008	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838	177	1	0.56	67	25	27.17	-	-	-	A	207288791	G	A	207288791	3	1	820	1	0	0	0	0	1	0	0	0	2270	1145	40	1	369	1	C4BPA	1	207288791	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	183926	207288791	41961830	4	69021										
CIB4	0	genome.wustl.edu	37	chr2	26806664	26806664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ccccagcacacacgtggttcGtgaggtccatcaggaggtcc	12	14	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	26806664	26806664	G	T	SNP	CIB4	ENST00000288861	human	ensembl	69_37n	-1	known	missense	c.431	p.T144K	0.003	smart_EF_hand_Ca-bd	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CIB4	HGNC	ENSG00000157884	37	0	0	12	13	52	-	-	-	T	26806664	G	T	26806664	3	4	820	1	0	0	0	0	1	0	0	0	3452	1145	40	3	138	3	CIB4	2	26806664	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		26806664	216392709	5	69022										
SUPT7L	0	genome.wustl.edu	37	chr2	27883995	27883996	+	Frame_Shift_Del	DEL	TC	TC	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tctcttcagtttttacacctTctgtctgctgctgattctgg							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	27883995	27883996	TC	-	DEL	SUPT7L	ENST00000337768	human	ensembl	69_37n	-1	known	frame_shift_del	c.275_274	p.E92fs	1.000:1.000	NULL	pfam_BTP,smart_BTP	-	no_errors	SUPT7L	HGNC	ENSG00000119760	213	1	0.47	49	33	39.76	-	-	-	-	27883996	TC	-	27883995	7	5	820	1	0	1	0	1	0	0	0	0	15492	1783	62	0	985	0	SUPT7L	2	27883995	Frame_Shift_Del	DEL	TC	TCGA-E2-A1LS-01A-12D-A159-09	1077331	27883995	215315378	6	69023										
SERPINE2	0	genome.wustl.edu	37	chr2	224847402	224847402	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tttaaattgaacatacttgtTatttttgcaaaatttgcctt	4	5	0	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	2	224847402	224847402	T	C	SNP	SERPINE2	ENST00000258405	human	ensembl	69_37n	-1	known	missense	c.981	p.I327M	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919	163	0	0	39	32	45.07	-	-	-	C	224847402	T	C	224847402	3	2	820	1	0	0	0	0	1	0	0	0	14200	1744	61	5	231	5	SERPINE2	2	224847402	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	196963407	224847402	18351971	7	69024										
TMEM115	0	genome.wustl.edu	37	chr3	50392897	50392897	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	accttggccccagactcctcTtcatcatcatccatgctggg	7	16	4	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	50392897	50392897	T	C	SNP	TMEM115	ENST00000266025	human	ensembl	69_37n	-1	known	silent	c.933	p.E311	0.985	NULL	pfam_DUF1751_Mem_euk	-	no_errors	TMEM115	HGNC	ENSG00000126062	84	0	0	10	11	52.38	-	-	-	C	50392897	T	C	50392897	2	2	820	1	0	0	0	0	0	0	0	1	16124	1606	56	5		5	TMEM115	3	50392897	Silent	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09		50392897	147629533	8	69025										
ROBO2	0	genome.wustl.edu	37	chr3	77614243	77614243	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caaggtctcagtgacccaagTcccatgtcagatcctgtgcg	10	13	2	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	77614243	77614243	T	A	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1821	p.S607R	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	147	0	0	27	19	41.3	-	-	-	A	77614243	T	A	77614243	3	1	820	1	0	0	0	0	1	0	0	0	13600	1664	58	5	1869	5	ROBO2	3	77614243	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	27221346	77614243	120408187	9	69026										
ARHGAP31	0	genome.wustl.edu	37	chr3	119128524	119128524	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gagaagaggccaaatccggaGaaggtggtggaggagggacg	20	5	0	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	3	119128524	119128524	G	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	1	known	missense	c.1827	p.E609D	0.995	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	138	0	0	22	12	35.29	-	-	-	C	119128524	G	C	119128524	3	2	820	1	0	0	0	0	1	0	0	0	882	933	33	2	1869	2	ARHGAP31	3	119128524	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	41514281	119128524	78893906	10	69027										
PLAC8	0	genome.wustl.edu	37	chr4	84015928	84015928	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	agcaaagagttgccatatagTcatcacaaatagatccctgt	7	9	2	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	84015928	84015928	T	C	SNP	PLAC8	ENST00000311507	human	ensembl	69_37n	-1	known	missense	c.260	p.D87G	1.000	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8	HGNC	ENSG00000145287	233	0	0	42	20	32.26	-	-	-	C	84015928	T	C	84015928	3	2	820	1	0	0	0	0	1	0	0	0	12089	1667	58	5	91	5	PLAC8	4	84015928	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09		84015928	107138348	11	69028										
C4orf21	0	genome.wustl.edu	37	chr4	113544995	113544995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caaggcatttaagaaacagaCtctccaaacatgctcctttg	6	11	1	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	113544995	113544995	C	G	SNP	C4orf21	ENST00000505019	human	ensembl	69_37n	-1	known	missense	c.140	p.S47T	0.980	pfam_DUF2439	pfam_DUF2439,pfam_Znf_GRF	-	no_errors	C4orf21	HGNC	ENSG00000138658	103	0	0	32	16	33.33	-	-	-	G	113544995	C	G	113544995	3	3	820	1	0	0	0	0	1	0	0	0	2275	565	20	4	6274	4	C4orf21	4	113544995	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	29529067	113544995	77609281	12	69029										
GUCY1B3	0	genome.wustl.edu	37	chr4	156723562	156723562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caagcgtccagtgcctgccaAaagatatgacaatgtgacca	9	11	0	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	4	156723562	156723562	A	G	SNP	GUCY1B3	ENST00000264424	human	ensembl	69_37n	1	known	missense	c.1244	p.K415R	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1B3	HGNC	ENSG00000061918	99	0	0	27	34	55.74	-	-	-	G	156723562	A	G	156723562	3	3	820	1	0	0	0	0	1	0	0	0	6946	14	1	5	1282	5	GUCY1B3	4	156723562	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	43178567	156723562	34430714	13	69030										
CMYA5	0	genome.wustl.edu	37	chr5	79041083	79041083	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gagaaaaggctagaagaacaGaatgaggaaatgatgaagaa	13	2	0	8			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	5	79041083	79041083	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.10773	p.Q3591H	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	218	0	0	0	19	100	-	-	-	T	79041083	G	T	79041083	3	4	820	1	0	0	0	0	1	0	0	0	3620	933	33	2	10787	2	CMYA5	5	79041083	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		79041083	101874177	14	69031										
CDHR2	0	genome.wustl.edu	37	chr5	176017599	176017599	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caggagtcagacctgtcgaaAcagctcatcagtgtcatcat	9	11	5	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	5	176017599	176017599	A	T	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.3450	p.K1150N	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	190	1	0.52	12	40	76.92	-	-	-	T	176017599	A	T	176017599	3	4	820	1	0	0	0	0	1	0	0	0	3148	40	2	5	3556	5	CDHR2	5	176017599	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	96976516	176017599	4897661	15	69032										
PGBD1	0	genome.wustl.edu	37	chr6	28269872	28269872	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	aaaatggatcaaattatttcGaaatacagggtgaggataag	10	3	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	28269872	28269872	G	A	SNP	PGBD1	ENST00000259883	human	ensembl	69_37n	1	known	silent	c.2241	p.S747	0.089	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_Srcr_rcpt,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338	104	0	0	23	19	45.24	-	-	-	A	28269872	G	A	28269872	2	1	820	1	0	0	0	0	0	0	0	1	11854	1045	37	1		1	PGBD1	6	28269872	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		28269872	142845195	16	69033										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32489813	32489813	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cgtcaggccgccccagctccGtcaccgcccggtactccccc	9	23	2	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	32489813	32489813	G	C	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	missense	c.239	p.T80R	0.050	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	35	0	0	16	6	27.27	-	-	-	C	32489813	G	C	32489813	3	2	820	1	0	0	0	0	1	0	0	0	7260	1145	40	3	581	3	HLA-DRB5	6	32489813	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	4219941	32489813	138625254	17	69034										
GPR110	0	genome.wustl.edu	37	chr6	46982477	46982477	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ctgatgacctgccacccagaGgactcacacttggctgtgat	10	13	1	4			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	46982477	46982477	G	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	silent	c.867	p.S289	0.086	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	119	0	0	13	11	45.83	-	-	-	A	46982477	G	A	46982477	2	1	820	1	0	0	0	0	0	0	0	1	6677	987	35	4		4	GPR110	6	46982477	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	14492664	46982477	124132590	18	69035										
HCRTR2	0	genome.wustl.edu	37	chr6	55145230	55145230	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ctgcgaatccaattatttatAattttctcagtggtgagttt	7	6	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	55145230	55145230	A	T	SNP	HCRTR2	ENST00000370862	human	ensembl	69_37n	1	known	missense	c.1093	p.N365Y	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252	201	0	0	62	58	48.33	-	-	-	T	55145230	A	T	55145230	3	4	820	1	0	0	0	0	1	0	0	0	7053	362	13	5	1115	5	HCRTR2	6	55145230	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	8162753	55145230	115969837	19	69036										
DST	0	genome.wustl.edu	37	chr6	56485202	56485202	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	acccgctccagttctctttcAgcggcttccttctctctcac	5	18	4	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	56485202	56485202	A	C	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	silent	c.3630	p.A1210	0.000	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	175	0	0	37	30	44.78	-	-	-	C	56485202	A	C	56485202	2	2	820	1	0	0	0	0	0	0	0	1	4818	175	7	5		5	DST	6	56485202	Silent	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	1339972	56485202	114629865	20	69037										
SHPRH	0	genome.wustl.edu	37	chr6	146247363	146247363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ttcctcaagtcggccatcacGcaaggtaggtggtatccctg	11	12	2	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	6	146247363	146247363	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.3298	p.R1100C	0.996	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	50	0	0	22	26	54.17	-	-	-	A	146247363	G	A	146247363	3	1	820	1	0	0	0	0	1	0	0	0	14380	1087	38	1	1857	1	SHPRH	6	146247363	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	89762161	146247363	24867704	21	69038										
SSPO	0	genome.wustl.edu	37	chr7	149481184	149481184	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ccagctcggagcccgtcgctAtgcccctggcagtgccacca	11	18	0	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	7	149481184	149481184	A	G	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.431	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	104	0	0	32	15	31.91	-	-	-	G	149481184	A	G	149481184	1	3	820	0	1	0	0	0	0	0	0	0	15280	449	16	5		5	SSPO	7	149481184	RNA	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09		149481184	9657479	22	69039										
MSRA	0	genome.wustl.edu	37	chr8	10285663	10285663	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tctgtgtccccacaggttctTtcagagcacggcttcggccc	10	15	3	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	10285663	10285663	T	C	SNP	MSRA	ENST00000317173	human	ensembl	69_37n	1	known	silent	c.549	p.L183	0.690	pfam_Peptide_Met_Sox_Rdtase_MsrA,superfamily_Peptide_Met_Sox_Rdtase_MsrA,tigrfam_Peptide_Met_Sox_Rdtase_MsrA	pfam_Peptide_Met_Sox_Rdtase_MsrA,superfamily_Peptide_Met_Sox_Rdtase_MsrA,tigrfam_Peptide_Met_Sox_Rdtase_MsrA	-	no_errors	MSRA	HGNC	ENSG00000175806	42	0	0	8	7	46.67	-	-	-	C	10285663	T	C	10285663	2	2	820	1	0	0	0	0	0	0	0	1	9959	1828	64	5		5	MSRA	8	10285663	Silent	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09		10285663	136078359	23	69040										
ANK1	0	genome.wustl.edu	37	chr8	41526060	41526060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caggtatgagacaatcgagcCgtctgcatcccagtcctgca	10	13	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	41526060	41526060	C	A	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.5119	p.G1707C	0.953	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	220	0	0	13	24	64.86	-	-	-	A	41526060	C	A	41526060	3	1	820	1	0	0	0	0	1	0	0	0	620	652	23	3	868	3	ANK1	8	41526060	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	31240397	41526060	104837962	24	69041										
RP1	0	genome.wustl.edu	37	chr8	55540278	55540279	+	Frame_Shift_Ins	INS	-	-	T													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	acatgtaaccccagtgacacINStttttttcctagtgatggtt							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	8	55540278	55540279	-	T	INS	RP1	ENST00000220676	human	ensembl	69_37n	1	known	frame_shift_ins	c.3836_3837	p.P1282fs	0.000:0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	44	0	0	30	12	28.57	-	-	-	T	55540279	-	T	55540278	7	5	820	1	0	1	1	0	0	0	0	0	13618	565	20	0	3846	0	RP1	8	55540278	Frame_Shift_Ins	INS	-	TCGA-E2-A1LS-01A-12D-A159-09	14014218	55540278	90823744	25	69042										
NTRK2	0	genome.wustl.edu	37	chr9	87366922	87366922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tctatgctgtggtggtgattGcgtctgtggtgggattttgc	16	5	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	87366922	87366922	G	A	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	missense	c.1318	p.A440T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	536	1	0.19	128	88	40.74	-	-	-	A	87366922	G	A	87366922	3	1	820	1	0	0	0	0	1	0	0	0	10780	1319	46	4	1360	4	NTRK2	9	87366922	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		87366922	53846509	26	69043										
ANKS6	0	genome.wustl.edu	37	chr9	101530484	101530484	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gctccaataatccggctgctTttttcctctgggcagcgatt	9	12	1	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	101530484	101530484	T	A	SNP	ANKS6	ENST00000375018	human	ensembl	69_37n	-1	known	missense	c.2021	p.K674I	0.934	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	38	0	0	14	5	26.32	-	-	-	A	101530484	T	A	101530484	3	1	820	1	0	0	0	0	1	0	0	0	691	1841	64	5	614	5	ANKS6	9	101530484	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	14163562	101530484	39682947	27	69044										
DNM1	0	genome.wustl.edu	37	chr9	131010957	131010957	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	accatccggaatcttgtggaCtcatacatggccattgtcaa	8	11	3	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	9	131010957	131010957	C	A	SNP	DNM1	ENST00000372923	human	ensembl	69_37n	1	known	missense	c.2001	p.D667E	1.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM1	HGNC	ENSG00000106976	180	0	0	37	13	26	-	-	-	A	131010957	C	A	131010957	3	1	820	1	0	0	0	0	1	0	0	0	4705	564	20	4	2070	4	DNM1	9	131010957	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	29480473	131010957	10202474	28	69045										
NEUROG3	0	genome.wustl.edu	37	chr10	71332562	71332562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ctttcgccgactccgtcgctGcttgctcagtgccaactcgc	9	17	1	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	10	71332562	71332562	G	T	SNP	NEUROG3	ENST00000242462	human	ensembl	69_37n	-1	known	missense	c.238	p.Q80K	0.996	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	NEUROG3	HGNC	ENSG00000122859	33	0	0	1	6	85.71	-	-	-	T	71332562	G	T	71332562	3	4	820	1	0	0	0	0	1	0	0	0	10426	1328	46	4	410	4	NEUROG3	10	71332562	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		71332562	64202185	29	69046										
TH	0	genome.wustl.edu	37	chr11	2192959	2192959	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tgcctgcttggcgtccagctCagacacggccctgcggaagc	13	15	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	2192959	2192959	C	G	SNP	TH	ENST00000381178	human	ensembl	69_37n	-1	known	missense	c.58	p.E20Q	1.000	pfam_Tyrosine_hydroxylase_CS,pirsf_Tyrosine_3-monooxygenase-like	pfam_Aromatic-AA_hydroxylase_C,pfam_Tyrosine_hydroxylase_CS,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	-	no_errors	TH	HGNC	ENSG00000180176	30	0	0	13	6	31.58	-	-	-	G	2192959	C	G	2192959	3	3	820	1	0	0	0	0	1	0	0	0	15933	835	29	2	1584	2	TH	11	2192959	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09		2192959	132813557	30	69047										
NLRP10	0	genome.wustl.edu	37	chr11	7982328	7982328	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gggagtgtatgtctcctaatTagaaggtgcagcaggctctc	13	8	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	7982328	7982328	T	A	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	silent	c.831	p.L277	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	90	0	0	22	19	46.34	-	-	-	A	7982328	T	A	7982328	2	1	820	1	0	0	0	0	0	0	0	1	10544	1741	61	5		5	NLRP10	11	7982328	Silent	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	5789369	7982328	127024188	31	69048										
OR5M11	0	genome.wustl.edu	37	chr11	56310311	56310311	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tagggaaatgtggccaagcaGatgcaaactctcctggacgt	12	9	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	56310311	56310311	G	T	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	silent	c.423	p.I141	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	74	0	0	207	39	15.85	-	-	-	T	56310311	G	T	56310311	2	4	820	1	0	0	0	0	0	0	0	1	11247	932	33	2		2	OR5M11	11	56310311	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	48327983	56310311	78696205	32	69049										
OR5M11	0	genome.wustl.edu	37	chr11	56310459	56310459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gtgtaaagcaaccagcaaagGaaatggtcttctcagatacg	10	8	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	56310459	56310459	G	T	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	missense	c.275	p.S92Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	129	0	0	357	57	13.77	-	-	-	T	56310459	G	T	56310459	3	4	820	1	0	0	0	0	1	0	0	0	11247	1174	41	2	645	2	OR5M11	11	56310459	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	148	56310459	78696057	33	69050										
CAPN1	0	genome.wustl.edu	37	chr11	64953645	64953645	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ctggagctgcccacagggtaAatggcagctacgaggccctg	14	12	0	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	64953645	64953645	A	C	SNP	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	missense	c.595	p.N199H	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	104	0	0	3	13	81.25	-	-	-	C	64953645	A	C	64953645	3	2	820	1	0	0	0	0	1	0	0	0	2647	14	1	5	613	5	CAPN1	11	64953645	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	8643186	64953645	70052871	34	69051										
CCDC87	0	genome.wustl.edu	37	chr11	66358801	66358801	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	agtgatgggagggagggcatCttcttagtattggactgtaa	15	4	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	66358801	66358801	C	G	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.1686	p.K562N	0.000	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	67	0	0	28	30	51.72	-	-	-	G	66358801	C	G	66358801	3	3	820	1	0	0	0	0	1	0	0	0	2889	912	32	2	867	2	CCDC87	11	66358801	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	1405156	66358801	68647715	35	69052										
ODZ4	0	genome.wustl.edu	37	chr11	78387425	78387425	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ccgatgtagtagctgttccgGacttggtctgcaggagagga	15	8	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	78387425	78387425	G	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.5268	p.V1756	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	110	0	0	37	5	11.9	-	-	-	T	78387425	G	T	78387425	2	4	820	1	0	0	0	0	0	0	0	1	10910	1161	41	2		2	ODZ4	11	78387425	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	12028624	78387425	56619091	36	69053										
DLG2	0	genome.wustl.edu	37	chr11	83344318	83344318	+	Missense_Mutation	SNP	T	T	C													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cccggagctcatgctgtggtTcatcatctgctctcgtaggt							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	83344318	83344318	T	C	SNP	DLG2	ENST00000376104	human	ensembl	69_37n	-1	known	missense	c.1876	p.N626D	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	345	2	0.57	14	39	73.58	-	-	-	C	83344318	T	C	83344318	3	2	820	1	0	0	0	0	1	0	0	0	4591	1783	62	5	1141	5	DLG2	11	83344318	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	4956893	83344318	51662198	37	69054	496	2								
DLG2	0	genome.wustl.edu	37	chr11	83344319	83344319	+	Missense_Mutation	SNP	C	C	T													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ccggagctcatgctgtggttCatcatctgctctcgtaggtc							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	11	83344319	83344319	C	T	SNP	DLG2	ENST00000376104	human	ensembl	69_37n	-1	known	missense	c.1875	p.M625I	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	347	2	0.57	13	38	73.08	-	-	-	T	83344319	C	T	83344319	3	4	820	1	0	0	0	0	1	0	0	0	4591	826	29	2	1142	2	DLG2	11	83344319	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	1	83344319	51662197	38	69055	496	2								
VWF	0	genome.wustl.edu	37	chr12	6122772	6122772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	agatccgtagctgggctgcaTcgtagcgatctccaattcca	10	12	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	12	6122772	6122772	T	C	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.5495	p.D1832G	0.913	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	289	0	0	25	23	47.92	-	-	-	C	6122772	T	C	6122772	3	2	820	1	0	0	0	0	1	0	0	0	17343	1435	50	5	3030	5	VWF	12	6122772	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09		6122772	127729123	39	69056										
TUBA1A	0	genome.wustl.edu	37	chr12	49580453	49580453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gcacatgcttgccagcccccGtctcactgaagaaggtgttg	11	13	1	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	12	49580453	49580453	G	A	SNP	TUBA1A	ENST00000301071	human	ensembl	69_37n	-1	known	missense	c.167	p.T56M	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA1A	HGNC	ENSG00000167552	647	0	0	40	47	54.02	-	-	-	A	49580453	G	A	49580453	3	1	820	1	0	0	0	0	1	0	0	0	16840	1145	40	1	1200	1	TUBA1A	12	49580453	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	43457681	49580453	84271442	40	69057										
SACS	0	genome.wustl.edu	37	chr13	23913912	23913912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ggcttgctggaatctgattgCtatacagccatctgataata	9	8	2	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	23913912	23913912	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.4103	p.S1368N	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	322	0	0	69	64	48.12	-	-	-	T	23913912	C	T	23913912	3	4	820	1	0	0	0	0	1	0	0	0	13890	797	28	4	9640	4	SACS	13	23913912	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09		23913912	91255966	41	69058										
ZC3H13	0	genome.wustl.edu	37	chr13	46549603	46549604	+	Frame_Shift_Del	DEL	CT	CT	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cgctctctctcccgttctcgCtctctctccctctctctctc							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	46549603	46549604	CT	-	DEL	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	frame_shift_del	c.2283_2282	p.E761fs	0.882:0.999	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	838	2	0.24	184	60	24.59	-	-	-	-	46549604	CT	-	46549603	7	5	820	1	0	1	0	1	0	0	0	0	17661	796	28	0	2435	0	ZC3H13	13	46549603	Frame_Shift_Del	DEL	CT	TCGA-E2-A1LS-01A-12D-A159-09	22635691	46549603	68620275	42	69059										
CDADC1	0	genome.wustl.edu	37	chr13	49830003	49830003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	agagggaaagcatggaccctTaggagataatgaagagagga	15	4	0	4			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	49830003	49830003	T	C	SNP	CDADC1	ENST00000251108	human	ensembl	69_37n	1	known	missense	c.206	p.L69S	0.846	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543	23	0	0	22	22	50	-	-	-	C	49830003	T	C	49830003	3	2	820	1	0	0	0	0	1	0	0	0	3082	1764	61	5	216	5	CDADC1	13	49830003	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	3280400	49830003	65339875	43	69060										
GPC6	0	genome.wustl.edu	37	chr13	94197607	94197607	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	caaagcaaactcgaatttgaAaaccttgtggaagagacaag	9	7	0	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	13	94197607	94197607	A	T	SNP	GPC6	ENST00000377047	human	ensembl	69_37n	1	known	missense	c.252	p.E84D	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	124	0	0	50	31	38.27	-	-	-	T	94197607	A	T	94197607	3	4	820	1	0	0	0	0	1	0	0	0	6652	11	1	5	258	5	GPC6	13	94197607	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	44367604	94197607	20972271	44	69061										
VPS18	0	genome.wustl.edu	37	chr15	41193091	41193091	+	Frame_Shift_Del	DEL	G	G	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ggctggggccagcccccaccGggtgcattacgacctcaagt							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	41193091	41193091	G	-	DEL	VPS18	ENST00000220509	human	ensembl	69_37n	1	known	frame_shift_del	c.2075	p.V693fs	0.971	pfam_Clathrin_H-chain/VPS_repeat	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	87	0	0	20	8	27.59	-	-	-	-	41193091	G	-	41193091	7	5	820	1	0	1	0	1	0	0	0	0	17291	1116	39	0	2089	0	VPS18	15	41193091	Frame_Shift_Del	DEL	G	TCGA-E2-A1LS-01A-12D-A159-09		41193091	61338301	45	69062										
MAP1A	0	genome.wustl.edu	37	chr15	43815340	43815340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gggacacaggactaggagatAagccattccctctagacact	10	11	1	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	43815340	43815340	A	G	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.1669	p.K557E	0.969	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	80	0	0	10	11	52.38	-	-	-	G	43815340	A	G	43815340	3	3	820	1	0	0	0	0	1	0	0	0	9298	363	13	5	1671	5	MAP1A	15	43815340	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	2622249	43815340	58716052	46	69063										
ONECUT1	0	genome.wustl.edu	37	chr15	53081031	53081031	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cggctcctgcagccacttccAcatcctccggaaggtctccc	8	19	1	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	15	53081031	53081031	A	G	SNP	ONECUT1	ENST00000305901	human	ensembl	69_37n	-1	known	missense	c.1051	p.W351R	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856	248	0	0	13	22	62.86	-	-	-	G	53081031	A	G	53081031	3	3	820	1	0	0	0	0	1	0	0	0	10941	159	6	5	354	5	ONECUT1	15	53081031	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	9265691	53081031	49450361	47	69064										
SRCAP	0	genome.wustl.edu	37	chr16	30723194	30723197	+	Frame_Shift_Del	DEL	CATT	CATT	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gtgaggatgaggaagatgaaCattcagaggaggaagaaaca							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	CATT	CATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	30723194	30723197	CATT	-	DEL	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	frame_shift_del	c.1531_1534	p.H511fs	0.051:0.029:0.007:0.723	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	459	0	0	21	16	43.24	-	-	-	-	30723197	CATT	-	30723194	7	5	820	1	0	1	0	1	0	0	0	0	15226	478	17	0	1569	0	SRCAP	16	30723194	Frame_Shift_Del	DEL	CATT	TCGA-E2-A1LS-01A-12D-A159-09		30723194	59631559	48	69065										
FUS	0	genome.wustl.edu	37	chr16	31195247	31195247	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gctatggcagtagccagagcTcccaatcgtcttacgggcag	12	12	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	31195247	31195247	T	A	SNP	FUS	ENST00000254108	human	ensembl	69_37n	1	known	missense	c.259	p.S87T	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280	128	0	0	17	10	35.71	-	-	-	A	31195247	T	A	31195247	3	1	820	1	0	0	0	0	1	0	0	0	6149	1551	54	5	273	5	FUS	16	31195247	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	472053	31195247	59159506	49	69066										
BCMO1	0	genome.wustl.edu	37	chr16	81301669	81301669	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tttcaggttggatattctcaAgatggcaaccgcatacatcc	8	10	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	16	81301669	81301669	A	T	SNP	BCMO1	ENST00000258168	human	ensembl	69_37n	1	known	missense	c.776	p.K259M	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	345	1	0.29	80	30	27.27	-	-	-	T	81301669	A	T	81301669	3	4	820	1	0	0	0	0	1	0	0	0	1388	72	3	5	798	5	BCMO1	16	81301669	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09	50106422	81301669	9053084	50	69067										
SLC43A2	0	genome.wustl.edu	37	chr17	1486583	1486583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cgaaggcccgcatggcattaGtgatcttctggatctgccgg	13	11	3	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	1486583	1486583	G	T	SNP	SLC43A2	ENST00000382147	human	ensembl	69_37n	-1	known	missense	c.1277	p.T426N	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703	87	0	0	7	19	73.08	-	-	-	T	1486583	G	T	1486583	3	4	820	1	0	0	0	0	1	0	0	0	14722	1029	36	4	460	4	SLC43A2	17	1486583	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		1486583	79708627	51	69068										
TP53	0	genome.wustl.edu	37	chr17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tttcttgcggagattctcttCctctgtgcgccggtctctcc	9	14	4	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	7577082	7577082	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.856	p.E286K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	388	0	0	10	24	70.59	-	-	-	T	7577082	C	T	7577082	3	4	820	1	0	0	0	0	1	0	0	0	16477	864	30	2	430	2	TP53	17	7577082	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	6090499	7577082	73618128	52	69069										
NF1	0	genome.wustl.edu	37	chr17	29527502	29527503	+	Frame_Shift_Del	DEL	AG	AG	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ggaggaagtaggcagctgacAgaaagtgctgcaattgcctg							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	29527502	29527503	AG	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	1	known	frame_shift_del	c.951_952	p.E318fs	0.909:1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	104	1	0.95	12	30	71.43	-	-	-	-	29527503	AG	-	29527502	7	5	820	1	0	1	0	1	0	0	0	0	10428	175	7	0	985	0	NF1	17	29527502	Frame_Shift_Del	DEL	AG	TCGA-E2-A1LS-01A-12D-A159-09	21950420	29527502	51667708	53	69070										
EFCAB3	0	genome.wustl.edu	37	chr17	60493497	60493497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tgagtccttttatgacacctTttctacttatacatggtcct	5	10	1	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	60493497	60493497	T	C	SNP	EFCAB3	ENST00000450662	human	ensembl	69_37n	1	known	missense	c.1280	p.F427S	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB3	HGNC	ENSG00000172421	138	0	0	2	31	93.94	-	-	-	C	60493497	T	C	60493497	3	2	820	1	0	0	0	0	1	0	0	0	4970	1841	64	5	1326	5	EFCAB3	17	60493497	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	30965995	60493497	20701713	54	69071										
ACTG1	0	genome.wustl.edu	37	chr17	79478402	79478402	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tgtcgcgcacgatttcccgcTcggccgtggtggtgaagctg	15	12	0	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	79478402	79478402	T	C	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.614	p.E205G	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	23	0	0	7	13	65	-	-	-	C	79478402	T	C	79478402	3	2	820	1	0	0	0	0	1	0	0	0	196	1551	54	5	525	5	ACTG1	17	79478402	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	18984905	79478402	1716808	55	69072										
FN3KRP	0	genome.wustl.edu	37	chr17	80684819	80684819	+	Frame_Shift_Del	DEL	C	C	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tctgggccggtgatttttgaCccagcttctttctacggcca							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	17	80684819	80684819	C	-	DEL	FN3KRP	ENST00000269373	human	ensembl	69_37n	1	known	frame_shift_del	c.702	p.P235fs	0.802	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	71	0	0	10	2	16.67	-	-	-	-	80684819	C	-	80684819	7	5	820	1	0	1	0	1	0	0	0	0	6010	506	18	0	724	0	FN3KRP	17	80684819	Frame_Shift_Del	DEL	C	TCGA-E2-A1LS-01A-12D-A159-09	1206417	80684819	510391	56	69073										
TIMM50	0	genome.wustl.edu	37	chr19	39976916	39976916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tatgaaattgtcatctttacGtcagagactggcatggtgag	11	6	3	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	39976916	39976916	G	A	SNP	TIMM50	ENST00000314349	human	ensembl	69_37n	1	known	silent	c.891	p.T297	0.067	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197	175	0	0	33	14	29.79	-	-	-	A	39976916	G	A	39976916	2	1	820	1	0	0	0	0	0	0	0	1	16008	1132	40	1		1	TIMM50	19	39976916	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		39976916	19152067	57	69074										
FCGBP	0	genome.wustl.edu	37	chr19	40430361	40430361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gcgcacagtgacgaggcccaCgtaggagacgcggcggctgc	17	13	0	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	40430361	40430361	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.1582	p.V528M	0.999	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	70	0	0	10	11	52.38	-	-	-	T	40430361	C	T	40430361	3	4	820	1	0	0	0	0	1	0	0	0	5824	536	19	1	14771	1	FCGBP	19	40430361	Missense_Mutation	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	453445	40430361	18698622	58	69075										
LILRA6	0	genome.wustl.edu	37	chr19	54745621	54745621	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tgtgagtccagggtccggggGagctggtgttctccttcctt	15	10	1	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	54745621	54745621	G	A	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	silent	c.489	p.L163	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	43	0	0	25	20	44.44	-	-	-	A	54745621	G	A	54745621	2	1	820	1	0	0	0	0	0	0	0	1	8844	1161	41	2		2	LILRA6	19	54745621	Silent	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	14315260	54745621	4383362	59	69076										
SBK2	0	genome.wustl.edu	37	chr19	56047657	56047657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	cttcctcagactgtttgccgGgcatctctgcgagaacagag	11	12	2	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	56047657	56047657	G	T	SNP	SBK2	ENST00000344158	human	ensembl	69_37n	-1	known	missense	c.5	p.P2H	0.238	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SBK2	HGNC	ENSG00000187550	19	0	0	4	11	73.33	-	-	-	T	56047657	G	T	56047657	3	4	820	1	0	0	0	0	1	0	0	0	13948	1232	43	4	1052	4	SBK2	19	56047657	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	1302036	56047657	3081326	60	69077										
NLRP11	0	genome.wustl.edu	37	chr19	56320356	56320356	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	taaaacaaaggcatatggtgCgtcaacttttccgggtcacg	10	9	2	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	19	56320356	56320356	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	silent	c.1620	p.T540	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	122	1	0.81	32	11	25.58	-	-	-	T	56320356	C	T	56320356	2	4	820	1	0	0	0	0	0	0	0	1	10545	755	27	1		1	NLRP11	19	56320356	Silent	SNP	C	TCGA-E2-A1LS-01A-12D-A159-09	272699	56320356	2808627	61	69078										
ASXL1	0	genome.wustl.edu	37	chr20	31022366	31022367	+	Frame_Shift_Ins	INS	-	-	A													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ccaggaccctcgcagacattINSaaagcccgtgctctgcaggt							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	20	31022366	31022367	-	A	INS	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	frame_shift_ins	c.1851_1852	p.A618fs	1.000:1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	8	0	0	6	3	33.33	-	-	-	A	31022367	-	A	31022366	7	5	820	1	0	1	1	0	0	0	0	0	1070	1742	61	0	1907	0	ASXL1	20	31022366	Frame_Shift_Ins	INS	-	TCGA-E2-A1LS-01A-12D-A159-09		31022366	32003154	62	69079										
DSCAM	0	genome.wustl.edu	37	chr21	41725667	41725667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tggatggggctgagttcgctGggtctgtagaagaaataaaa	15	4	1	3			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	21	41725667	41725667	G	T	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.659	p.P220Q	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	42	0	0	5	5	50	-	-	-	T	41725667	G	T	41725667	3	4	820	1	0	0	0	0	1	0	0	0	4803	1348	47	4	5495	4	DSCAM	21	41725667	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09		41725667	6404228	63	69080										
UMODL1	0	genome.wustl.edu	37	chr21	43543099	43543099	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tcagggtgctctgtgagatcGagaaggtggttgtcgccatc	15	8	2	2			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	21	43543099	43543099	G	C	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.3370	p.E1124Q	0.992	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	162	0	0	28	12	30	-	-	-	C	43543099	G	C	43543099	3	2	820	1	0	0	0	0	1	0	0	0	17077	1059	37	3	3432	3	UMODL1	21	43543099	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	1817432	43543099	4586796	64	69081										
TOP3B	0	genome.wustl.edu	37	chr22	22318572	22318572	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	tggttggcctgctgccgcagAgagcccttcaggtcaaagtt	13	11	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	22	22318572	22318572	A	T	SNP	TOP3B	ENST00000457270	human	ensembl	69_37n	-1	putative	missense	c.443	p.L148H	0.032	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TOP3B	HGNC	ENSG00000100038	42	0	0	3	49	94.23	-	-	-	T	22318572	A	T	22318572	3	4	820	1	0	0	0	0	1	0	0	0	16464	291	11	5	1565	5	TOP3B	22	22318572	Missense_Mutation	SNP	A	TCGA-E2-A1LS-01A-12D-A159-09		22318572	28985994	65	69082										
MYH9	0	genome.wustl.edu	37	chr22	36680272	36680272	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	ctcttcggcctcctccagctGccgcttgagctgcttcaggc	10	17	2	1			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	22	36680272	36680272	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	nonsense	c.5632	p.Q1878*	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	32	0	0	21	8	27.59	-	-	-	A	36680272	G	A	36680272	4	1	820	1	0	0	0	0	0	1	0	0	10114	1328	46	4	258	4	MYH9	22	36680272	Nonsense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	14361700	36680272	14624294	66	69083										
SCML1	0	genome.wustl.edu	37	chrX	17770041	17770042	+	Frame_Shift_Del	DEL	AG	AG	-													0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	gtcctatttctaaaacaaacAgatcctcttgcattatgccc							TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	17770041	17770042	AG	-	DEL	SCML1	ENST00000380041	human	ensembl	69_37n	1	known	frame_shift_del	c.810_811	p.D271fs	0.000:0.999	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634	121	1	0.82	18	49	73.13	-	-	-	-	17770042	AG	-	17770041	7	5	820	1	0	1	0	1	0	0	0	0	13997	175	7	0	835	0	SCML1	23	17770041	Frame_Shift_Del	DEL	AG	TCGA-E2-A1LS-01A-12D-A159-09		17770041	137500519	67	69084										
APOOL	0	genome.wustl.edu	37	chrX	84329041	84329041	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	atatgctacaagccagcaaaTttttggagcagttaaatcat	7	7	1	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	84329041	84329041	T	A	SNP	APOOL	ENST00000373173	human	ensembl	69_37n	1	known	missense	c.524	p.I175N	0.967	pfam_Apolipoprotein_O	pfam_Apolipoprotein_O	-	no_errors	APOOL	HGNC	ENSG00000155008	103	1	0.96	44	33	42.86	-	-	-	A	84329041	T	A	84329041	3	1	820	1	0	0	0	0	1	0	0	0	816	1493	52	5	550	5	APOOL	23	84329041	Missense_Mutation	SNP	T	TCGA-E2-A1LS-01A-12D-A159-09	66559000	84329041	70941519	68	69085										
TCEAL3	0	genome.wustl.edu	37	chrX	102864236	102864236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0441176470588235	3	0.859138559667492	1.08225108225108	3.78787878787879	0	0.181818181818182	0.738198193588003	0	agggcaagccacaaggcgagGgcaagccagcctcccaggca	14	14	0	0			TCGA-E2-A1LS-01A-12D-A159-09	TCGA-E2-A1LS-11A-32W-A16L-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	40087f80-85f6-4cc4-95c9-0639153dd3f4	a8f9516d-822f-4888-b66b-f42bb8e6a814	X	102864236	102864236	G	A	SNP	TCEAL3	ENST00000243286	human	ensembl	69_37n	1	known	missense	c.244	p.G82S	0.821	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507	359	0	0	67	47	41.23	-	-	-	A	102864236	G	A	102864236	3	1	820	1	0	0	0	0	1	0	0	0	15767	1232	43	4	246	4	TCEAL3	23	102864236	Missense_Mutation	SNP	G	TCGA-E2-A1LS-01A-12D-A159-09	18535195	102864236	52406324	69	69086										
ACOT7	0	genome.wustl.edu	37	chr1	6378566	6378566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tcttacctccgtgcacaaagCcgtgcagggtgcagtctgaa	11	12	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	6378566	6378566	C	T	SNP	ACOT7	ENST00000377855	human	ensembl	69_37n	-1	known	missense	c.728	p.G243D	1.000	pfam_Thioestr_supf	pfam_Thioestr_supf	-	no_errors	ACOT7	HGNC	ENSG00000097021	52	0	0	22	4	15.38	-	-	-	T	6378566	C	T	6378566	3	4	821	1	0	0	0	0	1	0	0	0	155	739	26	4	430	4	ACOT7	1	6378566	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		6378566	242872055	1	69087										
VPS13D	0	genome.wustl.edu	37	chr1	12405430	12405430	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tttctttgttctgcctgacaGacacacccatgacctccgga	7	14	2	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	12405430	12405430	G	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	splice_site	c.8886-1	e42-1	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707	46	0	0	29	4	12.12	-	-	-	T	12405430	G	T	12405430	5	4	821	1	0	0	0	0	0	0	1	0	17289	956	33	2	9051	2	VPS13D	1	12405430	Splice_Site	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	6026864	12405430	236845191	2	69088										
SYF2	0	genome.wustl.edu	37	chr1	25558585	25558585	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggatctaagccggcctccaaGactactcacccgcatcaggt	9	15	3	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	25558585	25558585	G	A	SNP	SYF2	ENST00000476231	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SYF2	HGNC	ENSG00000117614	104	0	0	48	17	26.15	-	-	-	A	25558585	G	A	25558585	1	1	821	0	1	0	0	0	0	0	0	0	15529	957	33	2		2	SYF2	1	25558585	RNA	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	13153155	25558585	223692036	3	69089										
TMEM69	0	genome.wustl.edu	37	chr1	46156753	46156753	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gggccagtatgcttcgcttcAtccagaagttttctcaagca	9	11	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	46156753	46156753	A	C	SNP	TMEM69	ENST00000372025	human	ensembl	69_37n	1	known	missense	c.13	p.I5L	1.000	NULL	pfam_DUF3429	-	no_errors	TMEM69	HGNC	ENSG00000159596	45	0	0	8	7	46.67	-	-	-	C	46156753	A	C	46156753	3	2	821	1	0	0	0	0	1	0	0	0	16293	217	8	5	15	5	TMEM69	1	46156753	Missense_Mutation	SNP	A	TCGA-E2-A2P5-01A-11D-A19Y-09	20598168	46156753	203093868	4	69090										
SARS	0	genome.wustl.edu	37	chr1	109756668	109756668	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aaaggaggggacccagccctCatccgagagacgcaggagaa	14	11	1	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	109756668	109756668	C	G	SNP	SARS	ENST00000369923	human	ensembl	69_37n	1	known	silent	c.54	p.L18	0.889	pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	56	0	0	24	5	17.24	-	-	-	G	109756668	C	G	109756668	2	3	821	1	0	0	0	0	0	0	0	1	13931	813	29	2		2	SARS	1	109756668	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	63599915	109756668	139493953	5	69091										
ECM1	0	genome.wustl.edu	37	chr1	150483102	150483102	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gctcaggaccctggggagagGagcaggaagcccgagccttg	17	11	1	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	150483102	150483102	G	A	SNP	ECM1	ENST00000470432	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ECM1	HGNC	ENSG00000143369	22	0	0	18	5	21.74	-	-	-	A	150483102	G	A	150483102	1	1	821	0	1	0	0	0	0	0	0	0	4932	1189	41	2		2	ECM1	1	150483102	RNA	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	40726434	150483102	98767519	6	69092										
LCE5A	0	genome.wustl.edu	37	chr1	152484086	152484086	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aatgccctcccaagtgtactCctaagtgtcctcccaagtgt	7	14	0	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	152484086	152484086	C	A	SNP	LCE5A	ENST00000334269	human	ensembl	69_37n	1	known	missense	c.76	p.P26T	0.000	NULL	NULL	-	no_errors	LCE5A	HGNC	ENSG00000186207	66	0	0	43	7	14	-	-	-	A	152484086	C	A	152484086	3	1	821	1	0	0	0	0	1	0	0	0	8729	855	30	2	78	2	LCE5A	1	152484086	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	2000984	152484086	96766535	7	69093										
MUC1	0	genome.wustl.edu	37	chr1	155159223	155159223	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cacctggtctgctgacacttCttcttctacctgggaaacct	7	14	4	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	155159223	155159223	C	T	SNP	MUC1	ENST00000462317	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	MUC1	HGNC	ENSG00000185499	53	0	0	44	12	21.43	-	-	-	T	155159223	C	T	155159223	1	4	821	0	1	0	0	0	0	0	0	0	10042	928	32	2		2	MUC1	1	155159223	RNA	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	2675137	155159223	94091398	8	69094										
PAPPA2	0	genome.wustl.edu	37	chr1	176668567	176668567	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gtgaaagtctacacctttgaTgagaggatagagattgatgc	12	5	1	5			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	176668567	176668567	T	G	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.3078	p.D1026E	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	76	0	0	48	46	48.94	-	-	-	G	176668567	T	G	176668567	3	3	821	1	0	0	0	0	1	0	0	0	11506	1461	51	5	3157	5	PAPPA2	1	176668567	Missense_Mutation	SNP	T	TCGA-E2-A2P5-01A-11D-A19Y-09	21509344	176668567	72582054	9	69095										
TMEM63A	0	genome.wustl.edu	37	chr1	226053738	226053738	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggtatgctcaggtttcctacCcaactccagcctctggaaag	9	13	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	226053738	226053738	C	G	SNP	TMEM63A	ENST00000474478	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TMEM63A	HGNC	ENSG00000196187	46	0	0	36	16	30.77	-	-	-	G	226053738	C	G	226053738	1	3	821	0	1	0	0	0	0	0	0	0	16285	638	22	4		4	TMEM63A	1	226053738	RNA	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	49385171	226053738	23196883	10	69096										
CAPN9	0	genome.wustl.edu	37	chr1	230895283	230895283	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tgctggctattagccgccatCgcctcccttacgcttaatca	7	15	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	230895283	230895283	C	T	SNP	CAPN9	ENST00000271971	human	ensembl	69_37n	1	known	silent	c.309	p.I103	0.667	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN9	HGNC	ENSG00000135773	32	0	0	31	12	27.91	-	-	-	T	230895283	C	T	230895283	2	4	821	1	0	0	0	0	0	0	0	1	2657	874	31	1		1	CAPN9	1	230895283	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	4841545	230895283	18355338	11	69097										
KIF26B	0	genome.wustl.edu	37	chr1	245530510	245530510	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	agcaatggggcggaaaagaaGagcgggtccccaacccacca	13	12	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	245530510	245530510	G	A	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	silent	c.840	p.K280	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	64	0	0	33	10	23.26	-	-	-	A	245530510	G	A	245530510	2	1	821	1	0	0	0	0	0	0	0	1	8347	933	33	2		2	KIF26B	1	245530510	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	14635227	245530510	3720111	12	69098										
OR2T34	0	genome.wustl.edu	37	chr1	248737167	248737167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cctggtgacatctttgttgcGgagactgtaaatgagggggt	15	6	1	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	1	248737167	248737167	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.892	p.R298C	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	16	0	0	26	7	21.21	-	-	-	A	248737167	G	A	248737167	3	1	821	1	0	0	0	0	1	0	0	0	11098	1116	39	1	68	1	OR2T34	1	248737167	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	3206657	248737167	513454	13	69099										
HADHA	0	genome.wustl.edu	37	chr2	26424084	26424084	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aacacagcttcaatcaccatGtcggccttttcaaaaccttg	5	13	3	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	2	26424084	26424084	G	C	SNP	HADHA	ENST00000380649	human	ensembl	69_37n	-1	known	missense	c.1326	p.D442E	1.000	pfam_3-OHacyl-CoA_DH_NAD-bd,tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754	38	0	0	19	5	20.83	-	-	-	C	26424084	G	C	26424084	3	2	821	1	0	0	0	0	1	0	0	0	6994	1368	48	4	997	4	HADHA	2	26424084	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		26424084	216775289	14	69100										
ETAA1	0	genome.wustl.edu	37	chr2	67631369	67631369	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctaactctactgaagcttctGaaaggaagtcagctttgaac	8	9	3	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	2	67631369	67631369	G	A	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	1	known	missense	c.1555	p.E519K	0.889	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	30	0	0	10	13	56.52	-	-	-	A	67631369	G	A	67631369	3	1	821	1	0	0	0	0	1	0	0	0	5304	1291	45	2	1573	2	ETAA1	2	67631369	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	41207285	67631369	175568004	15	69101										
CCDC115	0	genome.wustl.edu	37	chr2	131099321	131099321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctggagtccctcctgggcctCgctgaaggacgagaagggag	16	11	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	2	131099321	131099321	C	T	SNP	CCDC115	ENST00000442217	human	ensembl	69_37n	-1	known	missense	c.217	p.E73K	0.960	NULL	NULL	-	no_errors	CCDC115	HGNC	ENSG00000136710	26	0	0	6	7	53.85	-	-	-	T	131099321	C	T	131099321	3	4	821	1	0	0	0	0	1	0	0	0	2777	898	31	1	337	1	CCDC115	2	131099321	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	63467952	131099321	112100052	16	69102										
CHPF	0	genome.wustl.edu	37	chr2	220406340	220406340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gatagcttatcatcccacctCgtggtcaccagtgcagccca	8	15	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	2	220406340	220406340	C	T	SNP	CHPF	ENST00000243776	human	ensembl	69_37n	-1	known	missense	c.886	p.E296K	0.986	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989	33	0	0	6	4	40	-	-	-	T	220406340	C	T	220406340	3	4	821	1	0	0	0	0	1	0	0	0	3397	893	31	1	1453	1	CHPF	2	220406340	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	89307019	220406340	22793033	17	69103										
SP140	0	genome.wustl.edu	37	chr2	231090581	231090581	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tggcccagcagggccagcagGggcagatggcaagtggagac	18	10	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	2	231090581	231090581	G	C	SNP	SP140	ENST00000392045	human	ensembl	69_37n	1	known	missense	c.22	p.G8R	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	98	0	0	33	16	32.65	-	-	-	C	231090581	G	C	231090581	3	2	821	1	0	0	0	0	1	0	0	0	15051	1232	43	4	24	4	SP140	2	231090581	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	10684241	231090581	12108792	18	69104										
KALRN	0	genome.wustl.edu	37	chr3	124181439	124181439	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	atcctcaataaagagcatatCatctttggcaacatccaaga	5	10	3	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	124181439	124181439	C	A	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	1	novel	nonsense	c.3890	p.S1297*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	21	0	0	15	6	28.57	-	-	-	A	124181439	C	A	124181439	4	1	821	1	0	0	0	0	0	1	0	0	8029	816	29	2	4082	2	KALRN	3	124181439	Nonsense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		124181439	73840991	19	69105										
TM4SF1	0	genome.wustl.edu	37	chr3	149095218	149095218	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aagcggctgaggtggttttcGgaggcatactttgtttcccc	13	9	0	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	149095218	149095218	G	A	SNP	TM4SF1	ENST00000305366	human	ensembl	69_37n	-1	known	silent	c.117	p.S39	0.000	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908	54	0	0	29	13	30.95	-	-	-	A	149095218	G	A	149095218	2	1	821	1	0	0	0	0	0	0	0	1	16061	1103	39	1		1	TM4SF1	3	149095218	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	24913779	149095218	48927212	20	69106										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	20	19	48.72	-	-	-	A	178921553	T	A	178921553	3	1	821	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-E2-A2P5-01A-11D-A19Y-09	29826335	178921553	19100877	21	69107										
PIK3CA	0	genome.wustl.edu	37	chr3	178947865	178947865	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctaccttcattttgggaattGgagatcgtcacaatagtaac	8	8	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	178947865	178947865	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2740	p.G914R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	66	0	0	30	31	50.82	-	-	-	C	178947865	G	C	178947865	3	2	821	1	0	0	0	0	1	0	0	0	11987	1349	47	4	2810	4	PIK3CA	3	178947865	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	26312	178947865	19074565	22	69108										
MUC4	0	genome.wustl.edu	37	chr3	195506542	195506542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctgaggaacggctggtgacaGgaagagaggtggcgtgacct	18	7	0	4			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	195506542	195506542	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11909	p.P3970H	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	9	0	0	14	8	36.36	-	-	-	T	195506542	G	T	195506542	3	4	821	1	0	0	0	0	1	0	0	0	10050	1000	35	4		4	MUC4	3	195506542	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	16558677	195506542	2515888	23	69109										
C3orf43	0	genome.wustl.edu	37	chr3	196234917	196234917	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	attaggaacgtgacatccctGatgtacatctgcctcacttt	7	11	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	3	196234917	196234917	G	A	SNP	C3orf43	ENST00000397537	human	ensembl	69_37n	-1	known	silent	c.486	p.I162	0.028	NULL	NULL	-	no_errors	C3orf43	HGNC	ENSG00000214097	74	0	0	37	20	35.09	-	-	-	A	196234917	G	A	196234917	2	1	821	1	0	0	0	0	0	0	0	1	2250	1280	45	2		2	C3orf43	3	196234917	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	728375	196234917	1787513	24	69110										
DHX15	0	genome.wustl.edu	37	chr4	24557984	24557984	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tattacaccataacgctccaGgaggggatcattcatagctt	8	10	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	4	24557984	24557984	G	A	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	silent	c.751	p.L251	0.966	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	50	0	0	17	10	37.04	-	-	-	A	24557984	G	A	24557984	2	1	821	1	0	0	0	0	0	0	0	1	4537	991	35	4		4	DHX15	4	24557984	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		24557984	166596292	25	69111										
SEL1L3	0	genome.wustl.edu	37	chr4	25821433	25821433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tgaagctcaacacttacatgCttcttgtctctcgcccccgt	6	15	3	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	4	25821433	25821433	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	69_37n	-1	known	missense	c.1420	p.A474T	0.472	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	66	0	0	42	7	14.29	-	-	-	T	25821433	C	T	25821433	3	4	821	1	0	0	0	0	1	0	0	0	14100	797	28	4	2046	4	SEL1L3	4	25821433	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	1263449	25821433	165332843	26	69112										
FRYL	0	genome.wustl.edu	37	chr4	48512870	48512870	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	actgtttcagcatccacaaaGactgttgggcattctgaaca	8	10	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	4	48512870	48512870	G	C	SNP	FRYL	ENST00000358350	human	ensembl	69_37n	-1	known	silent	c.8277	p.V2759	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	57	0	0	25	7	21.88	-	-	-	C	48512870	G	C	48512870	2	2	821	1	0	0	0	0	0	0	0	1	6113	929	33	2		2	FRYL	4	48512870	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	22691437	48512870	142641406	27	69113										
ERBB2IP	0	genome.wustl.edu	37	chr5	65288560	65288560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tctaaaaatgactacaaaacGaagtttgtttgtgcggttgg	10	5	1	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	5	65288560	65288560	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	missense	c.14	p.R5Q	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	52	0	0	24	7	22.58	-	-	-	A	65288560	G	A	65288560	3	1	821	1	0	0	0	0	1	0	0	0	5244	1058	37	1	16	1	ERBB2IP	5	65288560	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		65288560	115626700	28	69114										
TTC37	0	genome.wustl.edu	37	chr5	94863727	94863727	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	acaagtctacctgatcaagcGtacgaattgcttcctctgaa	7	11	3	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	5	94863727	94863727	G	C	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.1124	p.T375R	0.713	pfscan_TPR-contain_dom	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	26	0	0	15	11	42.31	-	-	-	C	94863727	G	C	94863727	3	2	821	1	0	0	0	0	1	0	0	0	16802	1145	40	3	3694	3	TTC37	5	94863727	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	29575167	94863727	86051533	29	69115										
PCDHA6	0	genome.wustl.edu	37	chr5	140209181	140209181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggagcggcgggtgggcgagcGcgcgttgtcgagctacattt	19	9	0	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	5	140209181	140209181	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	1	known	missense	c.1505	p.R502H	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	124	0	0	48	30	38.46	-	-	-	A	140209181	G	A	140209181	3	1	821	1	0	0	0	0	1	0	0	0	11601	1087	38	1	1507	1	PCDHA6	5	140209181	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	45345454	140209181	40706079	30	69116										
PCDHGA12	0	genome.wustl.edu	37	chr5	140810542	140810542	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	atcatccccagaggtaggacGcagcttttcgccctgaatcc	9	14	1	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	5	140810542	140810542	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	69_37n	1	known	silent	c.216	p.T72	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159	28	0	0	8	10	55.56	-	-	-	A	140810542	G	A	140810542	2	1	821	1	0	0	0	0	0	0	0	1	11626	1074	38	1		1	PCDHGA12	5	140810542	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	601361	140810542	40104718	31	69117										
NSD1	0	genome.wustl.edu	37	chr5	176707706	176707706	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	atgctgctctatgagtgccaCcccacagtgtgtcctgccgg	11	14	1	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	5	176707706	176707706	C	G	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	missense	c.5763	p.H1921Q	1.000	smart_AWS,pfscan_AWS	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	50	0	0	37	14	27.45	-	-	-	G	176707706	C	G	176707706	3	3	821	1	0	0	0	0	1	0	0	0	10742	506	18	4	5829	4	NSD1	5	176707706	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	35897164	176707706	4207554	32	69118										
EXOC2	0	genome.wustl.edu	37	chr6	629855	629856	+	Frame_Shift_Ins	INS	-	-	G													0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tttcaatctcaatgccaagcINSgggttagcaggacgtaagga							TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	629855	629856	-	G	INS	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	frame_shift_ins	c.402_401	p.L135fs	0.001:1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	58	0	0	35	7	16.67	-	-	-	G	629856	-	G	629855	7	5	821	1	0	1	1	0	0	0	0	0	5338	755	27	0	2472	0	EXOC2	6	629855	Frame_Shift_Ins	INS	-	TCGA-E2-A2P5-01A-11D-A19Y-09		629855	170485212	33	69119										
CD109	0	genome.wustl.edu	37	chr6	74407127	74407127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gttgggaactctttaggcctCggtttctggtgacagcccca	12	11	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	74407127	74407127	C	T	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.79	p.R27W	0.114	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	44	0	0	27	13	32.5	-	-	-	T	74407127	C	T	74407127	3	4	821	1	0	0	0	0	1	0	0	0	2992	875	31	1	85	1	CD109	6	74407127	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	73777272	74407127	96707940	34	69120										
FILIP1	0	genome.wustl.edu	37	chr6	76072536	76072536	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tggcatctcggtgcaggaccCgcagcactttctctggctcc	11	15	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	76072536	76072536	C	A	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.374	p.R125L	0.272	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	63	0	0	50	7	12.28	-	-	-	A	76072536	C	A	76072536	3	1	821	1	0	0	0	0	1	0	0	0	5940	652	23	3	3283	3	FILIP1	6	76072536	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	1665409	76072536	95042531	35	69121										
BACH2	0	genome.wustl.edu	37	chr6	90717860	90717860	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aagtttacacttcttagaatCttactgaattaatggtgaaa	6	5	2	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	90717860	90717860	C	A	SNP	BACH2	ENST00000481150	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.588	-	-	-	no_errors	BACH2	HGNC	ENSG00000112182	21	0	0	7	6	46.15	-	-	-	A	90717860	C	A	90717860	1	1	821	0	1	0	0	0	0	0	0	0	1288	928	32	2		2	BACH2	6	90717860	RNA	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	14645324	90717860	80397207	36	69122										
PLEKHG1	0	genome.wustl.edu	37	chr6	151055058	151055058	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cggggcaacagaacgcggatGagggcagcgaaaggccaccc	16	12	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	151055058	151055058	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	23	0	0	18	9	33.33	-	-	-	A	151055058	G	A	151055058	3	1	821	1	0	0	0	0	1	0	0	0	12142	1291	45	2	243	2	PLEKHG1	6	151055058	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	60337198	151055058	20060009	37	69123			1	113		2	2	21	N	G_C	6.072809e-05
PLEKHG1	0	genome.wustl.edu	37	chr6	151055078	151055078	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gagggcagcgaaaggccaccCagagcgcagtggagagtgga	18	9	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	151055078	151055078	C	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	silent	c.261	p.P87	0.557	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	19	0	0	14	10	41.67	-	-	-	A	151055078	C	A	151055078	2	1	821	1	0	0	0	0	0	0	0	1	12142	581	21	4		4	PLEKHG1	6	151055078	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	20	151055078	20059989	38	69124			1	113		2	2	21	N	G_C	6.072809e-05
PLG	0	genome.wustl.edu	37	chr6	161128834	161128834	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gatgtagttttatttgaaaaGaaaggtgagtacattttctt	9	2	1	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	6	161128834	161128834	G	T	SNP	PLG	ENST00000308192	human	ensembl	69_37n	1	known	missense	c.288	p.K96N	0.996	pirsf_Pept_S1A_plasmin,pfam_PAN-1_domain,superfamily_Kringle-like,smart_Pan_app,pfscan_Pan_app	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	PLG	HGNC	ENSG00000122194	105	0	0	105	13	11.02	-	-	-	T	161128834	G	T	161128834	3	4	821	1	0	0	0	0	1	0	0	0	12160	933	33	2	298	2	PLG	6	161128834	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	10073756	161128834	9986233	39	69125										
MUC17	0	genome.wustl.edu	37	chr7	100684931	100684931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctgtcagcaccacgccggtgGtcagttctgaggttaacacc	11	13	3	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	7	100684931	100684931	G	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.10234	p.V3412F	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	61	0	0	25	22	46.81	-	-	-	T	100684931	G	T	100684931	3	4	821	1	0	0	0	0	1	0	0	0	10046	1261	44	4	10244	4	MUC17	7	100684931	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		100684931	58453732	40	69126										
MLL3	0	genome.wustl.edu	37	chr7	151945576	151945577	+	Frame_Shift_Ins	INS	-	-	AAAA													0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ttcaatgttttctgtcacttINSccattttatcttcaatttga							TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	7	151945576	151945577	-	AAAA	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1943_1942	p.E648fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	41	0	0	21	8	27.59	-	-	-	AAAA	151945577	-	AAAA	151945576	7	5	821	1	0	1	1	0	0	0	0	0	9693	1783	62	0	12976	0	MLL3	7	151945576	Frame_Shift_Ins	INS	-	TCGA-E2-A2P5-01A-11D-A19Y-09	51260645	151945576	7193087	41	69127										
NRG1	0	genome.wustl.edu	37	chr8	32505492	32505492	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tccccatcctggcttgcctgGtcagcctctgcctctgcatc	8	18	3	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	8	32505492	32505492	G	T	SNP	NRG1	ENST00000520502	human	ensembl	69_37n	1	known	missense	c.256	p.V86F	0.590	NULL	smart_EGF-like,pfscan_EG-like_dom	-	no_errors	NRG1	HGNC	ENSG00000157168	38	0	0	24	6	20	-	-	-	T	32505492	G	T	32505492	3	4	821	1	0	0	0	0	1	0	0	0	10720	1261	44	4	1531	4	NRG1	8	32505492	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		32505492	113858530	42	69128										
WHSC1L1	0	genome.wustl.edu	37	chr8	38187391	38187391	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tcccactgagcacgttctctCtgaggtcggggtttccgaat	11	12	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	8	38187391	38187391	C	T	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	silent	c.1086	p.Q362	1.000	NULL	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	23	0	0	17	15	46.88	-	-	-	T	38187391	C	T	38187391	2	4	821	1	0	0	0	0	0	0	0	1	17460	912	32	2		2	WHSC1L1	8	38187391	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	5681899	38187391	108176631	43	69129										
PLEKHA2	0	genome.wustl.edu	37	chr8	38803697	38803697	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gccaatgatcagaaagatatGaaggactgggttgaagccct	12	7	1	5			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	8	38803697	38803697	G	A	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	missense	c.303	p.M101I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	38	0	0	30	7	18.92	-	-	-	A	38803697	G	A	38803697	3	1	821	1	0	0	0	0	1	0	0	0	12130	1290	45	2	317	2	PLEKHA2	8	38803697	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	616306	38803697	107560325	44	69130										
GRHL2	0	genome.wustl.edu	37	chr8	102555524	102555524	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gtgaccctccattcaataccCgaagagcctacaccagtgag	8	14	1	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	8	102555524	102555524	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	1	known	nonsense	c.76	p.R26*	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	37	0	0	38	15	28.3	-	-	-	T	102555524	C	T	102555524	4	4	821	1	0	0	0	0	0	1	0	0	6815	644	23	1	82	1	GRHL2	8	102555524	Nonsense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	63751827	102555524	43808498	45	69131										
SNAPC3	0	genome.wustl.edu	37	chr9	15423978	15423978	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggagaatactgacctggtgaCtttggggtatggaggacttg	16	5	0	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	9	15423978	15423978	C	G	SNP	SNAPC3	ENST00000380821	human	ensembl	69_37n	1	known	missense	c.386	p.T129S	1.000	NULL	pfam_snRNA-activating_su3	-	no_errors	SNAPC3	HGNC	ENSG00000164975	51	0	0	41	13	24.07	-	-	-	G	15423978	C	G	15423978	3	3	821	1	0	0	0	0	1	0	0	0	14925	565	20	4	392	4	SNAPC3	9	15423978	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		15423978	125789453	46	69132										
IFNA10	0	genome.wustl.edu	37	chr9	21206973	21206973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	agagattcttcccatttgtcCcaggagtatcaaggccctcc	8	13	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	9	21206973	21206973	C	T	SNP	IFNA10	ENST00000357374	human	ensembl	69_37n	-1	known	missense	c.124	p.G42R	0.008	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803	102	1	0.97	67	9	11.84	-	-	-	T	21206973	C	T	21206973	3	4	821	1	0	0	0	0	1	0	0	0	7586	632	22	4	449	4	IFNA10	9	21206973	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	5782995	21206973	120006458	47	69133										
TEX10	0	genome.wustl.edu	37	chr9	103092448	103092448	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gagagaactgtgcaatgcttGatgctagaaacaaagacaca	10	7	0	4			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	9	103092448	103092448	G	A	SNP	TEX10	ENST00000374902	human	ensembl	69_37n	-1	known	silent	c.1254	p.I418	1.000	superfamily_ARM-type_fold	pfam_IPI1-like_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	57	0	0	25	14	35.9	-	-	-	A	103092448	G	A	103092448	2	1	821	1	0	0	0	0	0	0	0	1	15867	1280	45	2		2	TEX10	9	103092448	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	81885475	103092448	38120983	48	69134										
ZBTB26	0	genome.wustl.edu	37	chr9	125681646	125681646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	acttctaacctctgatacatCcccaatagattctaccttaa	2	13	3	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	9	125681646	125681646	C	A	SNP	ZBTB26	ENST00000373654	human	ensembl	69_37n	-1	known	missense	c.568	p.D190Y	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448	56	0	0	38	21	35.59	-	-	-	A	125681646	C	A	125681646	3	1	821	1	0	0	0	0	1	0	0	0	17629	855	30	2	761	2	ZBTB26	9	125681646	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	22589198	125681646	15531785	49	69135										
GOLGA2	0	genome.wustl.edu	37	chr9	131020796	131020798	+	In_Frame_Del	DEL	CCT	CCT	-													0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gggctgaggtactgccaccgCctcctcctcctcctcctcct							TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	9	131020796	131020798	CCT	-	DEL	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	in_frame_del	c.2146_2144	p.E715in_frame_del	0.000:0.000:0.004	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	19	0	0	20	5	20	-	-	-	-	131020798	CCT	-	131020796	7	5	821	1	0	1	0	1	0	0	0	0	6604	739	26	0	886	0	GOLGA2	9	131020796	In_Frame_Del	DEL	CCT	TCGA-E2-A2P5-01A-11D-A19Y-09	5339150	131020796	10192635	50	69136										
ITGA8	0	genome.wustl.edu	37	chr10	15697406	15697406	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tatccaaaataagatgccatCtgcaaaggaaaatcaggaga	8	7	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	10	15697406	15697406	C	G	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	splice_site	c.949-1	e11-1	1.000	-	-	-	no_errors	ITGA8	HGNC	ENSG00000077943	21	0	0	14	8	36.36	-	-	-	G	15697406	C	G	15697406	5	3	821	1	0	0	0	0	0	0	1	0	7936	927	32	2	2323	2	ITGA8	10	15697406	Splice_Site	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		15697406	119837341	51	69137										
CUBN	0	genome.wustl.edu	37	chr10	17156097	17156097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	caagtgtggagcaaggcccgGgctggaagctgcactcgtct	15	11	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	10	17156097	17156097	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.812	p.P271L	0.000	pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	28	0	0	17	6	26.09	-	-	-	A	17156097	G	A	17156097	3	1	821	1	0	0	0	0	1	0	0	0	4082	1232	43	4	10299	4	CUBN	10	17156097	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	1458691	17156097	118378650	52	69138										
MLLT10	0	genome.wustl.edu	37	chr10	21903799	21903799	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctttgtgaagaagaaggtaaTggtgccgataatgtccaata	11	5	0	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	10	21903799	21903799	T	G	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.549	p.N183K	1.000	smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	57	0	0	34	26	43.33	-	-	-	G	21903799	T	G	21903799	3	3	821	1	0	0	0	0	1	0	0	0	9697	1461	51	5	571	5	MLLT10	10	21903799	Missense_Mutation	SNP	T	TCGA-E2-A2P5-01A-11D-A19Y-09	4747702	21903799	113630948	53	69139										
SORCS3	0	genome.wustl.edu	37	chr10	107005371	107005371	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	accgacaccatcacagtccaGgtggctgctgggaatgccct	11	14	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	10	107005371	107005371	G	C	SNP	SORCS3	ENST00000369701	human	ensembl	69_37n	1	known	missense	c.2940	p.Q980H	1.000	superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	63	0	0	48	13	21.31	-	-	-	C	107005371	G	C	107005371	3	2	821	1	0	0	0	0	1	0	0	0	15021	991	35	4	3022	4	SORCS3	10	107005371	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	85101572	107005371	28529376	54	69140										
OR52B6	0	genome.wustl.edu	37	chr11	5602887	5602887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ccaaggccctgagtacctgtGgatcccatatctgtgtcatc	9	13	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	5602887	5602887	G	A	SNP	OR52B6	ENST00000345043	human	ensembl	69_37n	1	known	missense	c.781	p.G261R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B6	HGNC	ENSG00000187747	79	0	0	53	8	13.11	-	-	-	A	5602887	G	A	5602887	3	1	821	1	0	0	0	0	1	0	0	0	11186	1349	47	4	783	4	OR52B6	11	5602887	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		5602887	129403629	55	69141										
DNHD1	0	genome.wustl.edu	37	chr11	6592334	6592334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggcccacgctctctggactgGccgcctacccttgccttggc	11	18	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	6592334	6592334	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.13592	p.G4531D	0.977	pfam_Dynein_heavy	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	13	0	0	17	7	29.17	-	-	-	A	6592334	G	A	6592334	3	1	821	1	0	0	0	0	1	0	0	0	4703	1203	42	4	13759	4	DNHD1	11	6592334	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	989447	6592334	128414182	56	69142										
OR4A15	0	genome.wustl.edu	37	chr11	55136330	55136330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gaagaatgcagaaatgaaaaGtgccatgaggaaactttgga	12	4	0	4			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	55136330	55136330	G	A	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	missense	c.971	p.S324N	0.157	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	55	0	0	14	11	44	-	-	-	A	55136330	G	A	55136330	3	1	821	1	0	0	0	0	1	0	0	0	11113	1029	36	4	973	4	OR4A15	11	55136330	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	48543996	55136330	79870186	57	69143										
CCDC88B	0	genome.wustl.edu	37	chr11	64116864	64116864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ccggctggagcatttgcagcGtgagctggagcaggcggctc	17	11	0	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	64116864	64116864	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	69_37n	1	known	missense	c.2678	p.R893H	0.000	NULL	pfam_HOOK	-	no_errors	CCDC88B	HGNC	ENSG00000168071	53	0	0	15	10	40	-	-	-	A	64116864	G	A	64116864	3	1	821	1	0	0	0	0	1	0	0	0	2891	1145	40	1	2736	1	CCDC88B	11	64116864	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	8980534	64116864	70889652	58	69144										
SPTBN2	0	genome.wustl.edu	37	chr11	66453379	66453379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	agaagctgaagcgtttttctCgctctcgttctctgccgtct	9	12	4	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	66453379	66453379	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.7136	p.R2379Q	1.000	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	50	0	0	20	10	33.33	-	-	-	T	66453379	C	T	66453379	3	4	821	1	0	0	0	0	1	0	0	0	15211	884	31	1	40	1	SPTBN2	11	66453379	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	2336515	66453379	68553137	59	69145										
NNMT	0	genome.wustl.edu	37	chr11	114183079	114183079	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gaggcagtagaggctgctgtGaaagaggctggctacacaat	15	7	0	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	114183079	114183079	G	C	SNP	NNMT	ENST00000299964	human	ensembl	69_37n	1	known	silent	c.675	p.V225	0.002	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	NNMT	HGNC	ENSG00000166741	50	0	0	14	13	48.15	-	-	-	C	114183079	G	C	114183079	2	2	821	1	0	0	0	0	0	0	0	1	10581	1277	45	2		2	NNMT	11	114183079	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	47729700	114183079	20823437	60	69146										
THY1	0	genome.wustl.edu	37	chr11	119290034	119290034	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cctcaaggtttgagggattgGggggagggggtcagctgact	19	6	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	11	119290034	119290034	G	C	SNP	THY1	ENST00000524970	human	ensembl	69_37n	-1	known	missense	c.481	p.P161A	0.002	NULL	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	THY1	HGNC	ENSG00000154096	28	0	0	16	4	20	-	-	-	C	119290034	G	C	119290034	3	2	821	1	0	0	0	0	1	0	0	0	15980	1247	43	4		4	THY1	11	119290034	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	5106955	119290034	15716482	61	69147										
B4GALNT3	0	genome.wustl.edu	37	chr12	657408	657408	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctcttccagtggcgacggaaCgaccctggagccaagttcac	11	14	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	12	657408	657408	C	T	SNP	B4GALNT3	ENST00000266383	human	ensembl	69_37n	1	known	silent	c.798	p.N266	0.949	pfam_PA14,smart_PA14	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044	72	0	0	28	32	53.33	-	-	-	T	657408	C	T	657408	2	4	821	1	0	0	0	0	0	0	0	1	1272	535	19	1		1	B4GALNT3	12	657408	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		657408	133194487	62	69148										
TSPAN9	0	genome.wustl.edu	37	chr12	3392217	3392217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cccgtgtctttcagatcctgGgcatggccttctccatgacc	9	15	3	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	12	3392217	3392217	G	A	SNP	TSPAN9	ENST00000011898	human	ensembl	69_37n	1	known	missense	c.655	p.G219S	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN9	HGNC	ENSG00000011105	34	0	0	12	9	42.86	-	-	-	A	3392217	G	A	3392217	3	1	821	1	0	0	0	0	1	0	0	0	16750	1232	43	4	681	4	TSPAN9	12	3392217	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	2734809	3392217	130459678	63	69149										
ABCC9	0	genome.wustl.edu	37	chr12	21964989	21964989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aatatgttacctacctaatgGaaccactgaatagtattgga	7	7	0	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	12	21964989	21964989	G	T	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.4205	p.S1402Y	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	32	0	0	34	4	10.53	-	-	-	T	21964989	G	T	21964989	3	4	821	1	0	0	0	0	1	0	0	0	59	1174	41	2	606	2	ABCC9	12	21964989	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	18572772	21964989	111886906	64	69150										
ANKRD52	0	genome.wustl.edu	37	chr12	56648057	56648057	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gtttccaaaagcattgggttCatcgatctggatattcaggg	11	7	3	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	12	56648057	56648057	C	T	SNP	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645	50	0	0	23	15	39.47	-	-	-	T	56648057	C	T	56648057	3	4	821	1	0	0	0	0	1	0	0	0	677	835	29	2	2614	2	ANKRD52	12	56648057	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	34683068	56648057	77203838	65	69151										
KSR2	0	genome.wustl.edu	37	chr12	118199253	118199253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cacggggtgggctccgggggGcacacgggattgttctcctt	17	11	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	12	118199253	118199253	G	A	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.549	p.C183	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	28	0	0	28	10	26.32	-	-	-	A	118199253	G	A	118199253	2	1	821	1	0	0	0	0	0	0	0	1	8636	1195	42	4		4	KSR2	12	118199253	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	61551196	118199253	15652642	66	69152										
MYH7	0	genome.wustl.edu	37	chr14	23887512	23887512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	agttggccttggaaaggacgCgctgcagctcggccttggcc	15	12	0	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	14	23887512	23887512	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4076	p.R1359H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	46	0	0	20	21	51.22	-	-	-	T	23887512	C	T	23887512	3	4	821	1	0	0	0	0	1	0	0	0	10111	768	27	1	1775	1	MYH7	14	23887512	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		23887512	83462028	67	69153										
FOXA1	0	genome.wustl.edu	37	chr14	38061240	38061240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cgttctcgaacatgttgccgGagtccgggtgcagcgtccag	14	12	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	14	38061240	38061240	G	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.749	p.S250F	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	39	0	0	28	16	35.56	-	-	-	A	38061240	G	A	38061240	3	1	821	1	0	0	0	0	1	0	0	0	6035	1174	41	2	673	2	FOXA1	14	38061240	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	14173728	38061240	69288300	68	69154										
EXD2	0	genome.wustl.edu	37	chr14	69695782	69695782	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	acctccgatacctagccatgCggcagaggtgtggtttgtat	12	10	0	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	14	69695782	69695782	C	A	SNP	EXD2	ENST00000312994	human	ensembl	69_37n	1	known	silent	c.583	p.R195	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD2	HGNC	ENSG00000081177	56	0	0	35	5	12.5	-	-	-	A	69695782	C	A	69695782	2	1	821	1	0	0	0	0	0	0	0	1	5334	759	27	3		3	EXD2	14	69695782	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	31634542	69695782	37653758	69	69155										
ADAM21	0	genome.wustl.edu	37	chr14	70925057	70925057	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aggtcctgaacgatttctctCaatggaaacaaatcagtctt	7	9	4	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	14	70925057	70925057	C	G	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	1	known	missense	c.841	p.Q281E	0.005	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	58	0	0	61	9	12.86	-	-	-	G	70925057	C	G	70925057	3	3	821	1	0	0	0	0	1	0	0	0	243	827	29	2	843	2	ADAM21	14	70925057	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	1229275	70925057	36424483	70	69156										
BDKRB1	0	genome.wustl.edu	37	chr14	96731044	96731044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tgctccaatatcttcatcccAtaggaaagaaatcttccaac	4	12	3	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	14	96731044	96731044	A	G	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	1	known	missense	c.1025	p.H342R	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	50	0	0	22	17	43.59	-	-	-	G	96731044	A	G	96731044	3	3	821	1	0	0	0	0	1	0	0	0	1396	217	8	5	1027	5	BDKRB1	14	96731044	Missense_Mutation	SNP	A	TCGA-E2-A2P5-01A-11D-A19Y-09	25805987	96731044	10618496	71	69157										
APBA2	0	genome.wustl.edu	37	chr15	29346222	29346222	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gagggctatgtgcccgagggCctggagctggctgccctgcg	18	12	0	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	15	29346222	29346222	C	T	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	silent	c.135	p.G45	0.005	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	51	0	0	14	9	39.13	-	-	-	T	29346222	C	T	29346222	2	4	821	1	0	0	0	0	0	0	0	1	758	726	26	4		4	APBA2	15	29346222	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09		29346222	73185170	72	69158										
CASC4	0	genome.wustl.edu	37	chr15	44615196	44615196	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	acaacatatcgtatcagatgGcagacatacatcatttaaag	6	8	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	15	44615196	44615196	G	T	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.361	p.A121S	1.000	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	28	0	0	14	3	17.65	-	-	-	T	44615196	G	T	44615196	3	4	821	1	0	0	0	0	1	0	0	0	2687	1203	42	4	367	4	CASC4	15	44615196	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	15268974	44615196	57916196	73	69159										
AXIN1	0	genome.wustl.edu	37	chr16	343662	343662	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gagggccggcccaggggtgcTcaagggacaagggtctggag	20	9	2	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	16	343662	343662	T	C	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	missense	c.2012	p.E671G	0.999	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	59	0	0	40	23	36.51	-	-	-	C	343662	T	C	343662	3	2	821	1	0	0	0	0	1	0	0	0	1240	1551	54	5	592	5	AXIN1	16	343662	Missense_Mutation	SNP	T	TCGA-E2-A2P5-01A-11D-A19Y-09		343662	90011091	74	69160										
CDH1	0	genome.wustl.edu	37	chr16	68847225	68847225	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ttgctctgcagtacaagggtCaggtgcctgagaacgaggct	14	9	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	16	68847225	68847225	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1147	p.Q383*	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	51	0	0	11	14	56	-	-	-	T	68847225	C	T	68847225	4	4	821	1	0	0	0	0	0	1	0	0	3124	827	29	2	1181	2	CDH1	16	68847225	Nonsense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	68503563	68847225	21507528	75	69161										
TP53	0	genome.wustl.edu	37	chr17	7574005	7574005	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aggcctcattcagctctcggAacatctcgaagcgctcacgc	9	15	5	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	17	7574005	7574005	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.1022	p.F341S	0.935	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	24	0	0	3	7	70	-	-	-	G	7574005	A	G	7574005	3	3	821	1	0	0	0	0	1	0	0	0	16477	246	9	5	167	5	TP53	17	7574005	Missense_Mutation	SNP	A	TCGA-E2-A2P5-01A-11D-A19Y-09		7574005	73621205	76	69162										
MYH8	0	genome.wustl.edu	37	chr17	10312803	10312803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	cttgggcttctggaagttggCagacttgcccaggtgctggt	15	9	1	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	17	10312803	10312803	C	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.1690	p.A564T	0.006	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	57	0	0	29	4	11.76	-	-	-	T	10312803	C	T	10312803	3	4	821	1	0	0	0	0	1	0	0	0	10113	710	25	4	4223	4	MYH8	17	10312803	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	2738798	10312803	70882407	77	69163										
TRAF4	0	genome.wustl.edu	37	chr17	27075097	27075097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aatcgctgccccatgaagctGagccgccgtgatctacctgc	10	15	1	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	17	27075097	27075097	G	A	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	silent	c.363	p.L121	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	33	0	0	5	11	68.75	-	-	-	A	27075097	G	A	27075097	2	1	821	1	0	0	0	0	0	0	0	1	16539	1277	45	2		2	TRAF4	17	27075097	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	16762294	27075097	54120113	78	69164										
TRAF4	0	genome.wustl.edu	37	chr17	27075180	27075180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gttttgtggctgtgacttcaGtggggaggcctatgaggtgg	18	5	1	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	17	27075180	27075180	G	A	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	missense	c.446	p.S149N	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	28	0	0	4	6	60	-	-	-	A	27075180	G	A	27075180	3	1	821	1	0	0	0	0	1	0	0	0	16539	1029	36	4	460	4	TRAF4	17	27075180	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	83	27075180	54120030	79	69165										
C18orf8	0	genome.wustl.edu	37	chr18	21109597	21109597	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gaccacatttttttctccctAggagatgcctcataaatttg	6	10	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	18	21109597	21109597	A	G	SNP	C18orf8	ENST00000269221	human	ensembl	69_37n	1	known	splice_site	c.1417-2	e16-2	1.000	-	-	-	no_errors	C18orf8	HGNC	ENSG00000141452	46	0	0	28	5	15.15	-	-	-	G	21109597	A	G	21109597	5	3	821	1	0	0	0	0	0	0	1	0	1925	434	15	5	1477	5	C18orf8	18	21109597	Splice_Site	SNP	A	TCGA-E2-A2P5-01A-11D-A19Y-09		21109597	56967651	80	69166										
DSG3	0	genome.wustl.edu	37	chr18	29055625	29055625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ttagaaagcatttgcctgtgCggaggaagacgatggccagg	15	7	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	18	29055625	29055625	C	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	missense	c.2402	p.A801V	0.993	pfam_Cadherin_cytoplasmic-dom,prints_Desmoglein	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	51	0	0	24	18	42.86	-	-	-	T	29055625	C	T	29055625	3	4	821	1	0	0	0	0	1	0	0	0	4813	768	27	1	2464	1	DSG3	18	29055625	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	7946028	29055625	49021623	81	69167										
NFATC1	0	genome.wustl.edu	37	chr18	77211060	77211060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	gggtacggctggtgttccgcGttcacgtcccgcaacccagc	13	15	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	18	77211060	77211060	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	missense	c.1696	p.V566I	0.976	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	41	0	0	15	10	40	-	-	-	A	77211060	G	A	77211060	3	1	821	1	0	0	0	0	1	0	0	0	10433	1145	40	1	1806	1	NFATC1	18	77211060	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	48155435	77211060	866188	82	69168										
ZNF585A	0	genome.wustl.edu	37	chr19	37643190	37643190	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tgaattttctgatgtatattGaggtgtgacttctgagtgaa	11	3	2	6			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	19	37643190	37643190	G	A	SNP	ZNF585A	ENST00000356958	human	ensembl	69_37n	-1	known	silent	c.1611	p.L537	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967	73	0	0	39	7	15.22	-	-	-	A	37643190	G	A	37643190	2	1	821	1	0	0	0	0	0	0	0	1	18113	1277	45	2		2	ZNF585A	19	37643190	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		37643190	21485793	83	69169										
WISP2	0	genome.wustl.edu	37	chr20	43356514	43356514	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ttatccggggcagaattcagGggcagagttctctgtgaacc	13	9	2	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	20	43356514	43356514	G	A	SNP	WISP2	ENST00000471629	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	39	0	0	23	4	14.81	-	-	-	A	43356514	G	A	43356514	1	1	821	0	1	0	0	0	0	0	0	0	17470	1247	43	4		4	WISP2	20	43356514	RNA	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		43356514	19669006	84	69170										
GABPA	0	genome.wustl.edu	37	chr21	27107738	27107738	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ggttggggcttctcagcgccGattccgcgggaagggccctg	17	12	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	21	27107738	27107738	G	A	SNP	GABPA	ENST00000487266	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	GABPA	HGNC	ENSG00000154727	49	0	0	37	9	19.57	-	-	-	A	27107738	G	A	27107738	1	1	821	0	1	0	0	0	0	0	0	0	6206	1073	37	1		1	GABPA	21	27107738	RNA	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		27107738	21022157	85	69171										
BID	0	genome.wustl.edu	37	chr22	18222887	18222887	+	Frame_Shift_Del	DEL	G	G	-													0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aggccacgctcaactgccacGctccctgccgcctccgtttc							TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	22	18222887	18222887	G	-	DEL	BID	ENST00000342111	human	ensembl	69_37n	-1	known	frame_shift_del	c.279	p.S93fs	0.000	NULL	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475	32	0	0	16	2	10.53	-	-	-	-	18222887	G	-	18222887	7	5	821	1	0	1	0	1	0	0	0	0	1435	1102	38	0		0	BID	22	18222887	Frame_Shift_Del	DEL	G	TCGA-E2-A2P5-01A-11D-A19Y-09		18222887	33081679	86	69172										
SLC5A4	0	genome.wustl.edu	37	chr22	32626965	32626965	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	attttcctaccttggggcatCagttccagcaccatcgtggg	10	12	1	0			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	22	32626965	32626965	C	G	SNP	SLC5A4	ENST00000266086	human	ensembl	69_37n	-1	known	silent	c.1119	p.L373	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191	37	0	0	9	16	64	-	-	-	G	32626965	C	G	32626965	2	3	821	1	0	0	0	0	0	0	0	1	14756	813	29	2		2	SLC5A4	22	32626965	Silent	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	14404078	32626965	18677601	87	69173										
TNRC6B	0	genome.wustl.edu	37	chr22	40676008	40676008	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ctacttttcaggaagcctttCagataaaaaatttgatgtgg	8	6	2	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	22	40676008	40676008	C	A	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	nonsense	c.3272	p.S1091*	1.000	superfamily_UBA-like	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	35	0	0	16	20	55.56	-	-	-	A	40676008	C	A	40676008	4	1	821	1	0	0	0	0	0	1	0	0	16436	838	29	2	3431	2	TNRC6B	22	40676008	Nonsense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	8049043	40676008	10628558	88	69174										
OTUD6A	0	genome.wustl.edu	37	chrX	69282969	69282969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	ccgagaccagcgactccttcGgctacgacgacttcatgatc	9	15	1	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	69282969	69282969	G	A	SNP	OTUD6A	ENST00000338352	human	ensembl	69_37n	1	known	missense	c.595	p.G199S	0.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401	32	0	0	14	5	26.32	-	-	-	A	69282969	G	A	69282969	3	1	821	1	0	0	0	0	1	0	0	0	11389	1116	39	1	597	1	OTUD6A	23	69282969	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09		69282969	85987591	89	69175										
FGF16	0	genome.wustl.edu	37	chrX	76711932	76711932	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tacaggactaaacgacaccaGaaattcactcactttttacc	4	12	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	76711932	76711932	G	A	SNP	FGF16	ENST00000439435	human	ensembl	69_37n	1	known	missense	c.269	p.R90K	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGF16	HGNC	ENSG00000196468	35	0	0	15	4	21.05	-	-	-	A	76711932	G	A	76711932	3	1	821	1	0	0	0	0	1	0	0	0	5890	933	33	2	276	2	FGF16	23	76711932	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	7428963	76711932	78558628	90	69176										
PGAM4	0	genome.wustl.edu	37	chrX	77224968	77224968	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	actctcttctgcactgaggtGaggcagatgtcaaactcata	9	10	4	3			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	77224968	77224968	G	T	SNP	PGAM4	ENST00000458128	human	ensembl	69_37n	-1	known	silent	c.168	p.L56	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM4	HGNC	ENSG00000226784	77	0	0	37	15	28.85	-	-	-	T	77224968	G	T	77224968	2	4	821	1	0	0	0	0	0	0	0	1	11849	1277	45	2		2	PGAM4	23	77224968	Silent	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	513036	77224968	78045592	91	69177										
DACH2	0	genome.wustl.edu	37	chrX	85403985	85403985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	agagactggatatatcccccGtggtgtgtactgttgagcag	13	8	0	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	85403985	85403985	G	A	SNP	DACH2	ENST00000373125	human	ensembl	69_37n	1	known	missense	c.361	p.V121M	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	62	0	0	42	11	20.75	-	-	-	A	85403985	G	A	85403985	3	1	821	1	0	0	0	0	1	0	0	0	4253	1145	40	1	363	1	DACH2	23	85403985	Missense_Mutation	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	8179017	85403985	69866575	92	69178										
ZMAT1	0	genome.wustl.edu	37	chrX	101139060	101139060	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	tgaataggtctggaaagtctCacatgggagcttttgctcca	11	8	2	1			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	101139060	101139060	C	G	SNP	ZMAT1	ENST00000372782	human	ensembl	69_37n	-1	known	missense	c.1339	p.E447Q	0.673	NULL	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432	67	0	0	27	26	49.06	-	-	-	G	101139060	C	G	101139060	3	3	821	1	0	0	0	0	1	0	0	0	17787	835	29	2	581	2	ZMAT1	23	101139060	Missense_Mutation	SNP	C	TCGA-E2-A2P5-01A-11D-A19Y-09	15735075	101139060	54131500	93	69179										
THOC2	0	genome.wustl.edu	37	chrX	122734860	122734860	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.234042553191489	22	0.000767045334320998	2.34063260340633	3.0720802919708	2.10656934306569	0.0543242765764547	0.396486137998304	13	aataaaaaggaagcatttcaGaatggaaataaaaactgaac	7	4	1	2			TCGA-E2-A2P5-01A-11D-A19Y-09	TCGA-E2-A2P5-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34e624a6-5da3-4150-bfb8-d86ee8732d08	4bce079d-bbf4-481c-8aab-a007e90d4e97	X	122734860	122734860	G	A	SNP	THOC2	ENST00000492203	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	THOC2	HGNC	ENSG00000125676	78	0	0	44	9	16.67	-	-	-	A	122734860	G	A	122734860	1	1	821	0	1	0	0	0	0	0	0	0	15960	957	33	2		2	THOC2	23	122734860	RNA	SNP	G	TCGA-E2-A2P5-01A-11D-A19Y-09	21595800	122734860	32535700	94	69180										
UBR4	0	genome.wustl.edu	37	chr1	19487465	19487465	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gtgcggcagaggctgctcttCttgggcttctcttcgtcagc	13	12	4	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	19487465	19487465	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.5352	p.K1784	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	35	0	0	3	7	70	-	-	-	T	19487465	C	T	19487465	2	4	822	1	0	0	0	0	0	0	0	1	17001	912	32	2		2	UBR4	1	19487465	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		19487465	229763156	1	69181										
BAI2	0	genome.wustl.edu	37	chr1	32196739	32196739	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagcaccatgtagtctccctCagagcctggctcagtgggcc	11	15	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	32196739	32196739	C	T	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	missense	c.4042	p.E1348K	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	48	0	0	23	16	41.03	-	-	-	T	32196739	C	T	32196739	3	4	822	1	0	0	0	0	1	0	0	0	1303	835	29	2	735	2	BAI2	1	32196739	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	12709274	32196739	217053882	2	69182										
YARS	0	genome.wustl.edu	37	chr1	33248074	33248074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aggggtattaaacttttcccGgattggatccagcaacttgt	10	8	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	33248074	33248074	G	A	SNP	YARS	ENST00000373477	human	ensembl	69_37n	-1	known	missense	c.973	p.R325W	1.000	NULL	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,pfscan_tRNA-bd_dom,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS	HGNC	ENSG00000134684	49	0	0	37	25	40.32	-	-	-	A	33248074	G	A	33248074	3	1	822	1	0	0	0	0	1	0	0	0	17564	1115	39	1	633	1	YARS	1	33248074	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1051335	33248074	216002547	3	69183										
FNDC5	0	genome.wustl.edu	37	chr1	33328660	33328660	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tgacttttcagttgtccaagCtagcatttctgaaactccaa	6	10	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	33328660	33328660	C	T	SNP	FNDC5	ENST00000481487	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FNDC5	HGNC	ENSG00000160097	14	0	0	9	7	43.75	-	-	-	T	33328660	C	T	33328660	1	4	822	0	1	0	0	0	0	0	0	0	6018	812	28	4		4	FNDC5	1	33328660	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	80586	33328660	215921961	4	69184										
CLDN19	0	genome.wustl.edu	37	chr1	43203908	43203908	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cctggcacccacctggcattGacaggtgtgcttgggttgaa	13	11	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	43203908	43203908	G	C	SNP	CLDN19	ENST00000296387	human	ensembl	69_37n	-1	known	silent	c.465	p.V155	0.999	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007	27	0	0	18	9	33.33	-	-	-	C	43203908	G	C	43203908	2	2	822	1	0	0	0	0	0	0	0	1	3510	1277	45	2		2	CLDN19	1	43203908	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	9875248	43203908	206046713	5	69185										
PODN	0	genome.wustl.edu	37	chr1	53535792	53535792	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gtggcggtattgacctgcgtGagttcccgggggacctgcct	16	11	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	53535792	53535792	G	A	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	0.995	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	48	0	0	29	11	27.5	-	-	-	A	53535792	G	A	53535792	3	1	822	1	0	0	0	0	1	0	0	0	12252	1291	45	2	415	2	PODN	1	53535792	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	10331884	53535792	195714829	6	69186										
DENND2C	0	genome.wustl.edu	37	chr1	115168209	115168209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aggtaatgaagtctctggatCtaagacatcttctttacagc	8	8	4	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	115168209	115168209	C	G	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	missense	c.397	p.D133H	0.644	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	54	0	0	31	16	34.04	-	-	-	G	115168209	C	G	115168209	3	3	822	1	0	0	0	0	1	0	0	0	4466	913	32	2	2286	2	DENND2C	1	115168209	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	61632417	115168209	134082412	7	69187										
PDE4DIP	0	genome.wustl.edu	37	chr1	144879078	144879078	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctcctcagccagcttctcttCtagtccattttttgggagct	7	13	3	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	144879078	144879078	C	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.4372	p.E1458Q	0.977	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	68	0	0	60	8	11.76	-	-	-	G	144879078	C	G	144879078	3	3	822	1	0	0	0	0	1	0	0	0	11716	922	32	2	2740	2	PDE4DIP	1	144879078	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	29710869	144879078	104371543	8	69188										
VPS45	0	genome.wustl.edu	37	chr1	150053517	150053517	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gaatcagtaaagacttaagaGaagtggtcctatctgctgaa	10	6	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	150053517	150053517	G	A	SNP	VPS45	ENST00000369130	human	ensembl	69_37n	1	known	missense	c.781	p.E261K	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631	34	0	0	49	10	16.95	-	-	-	A	150053517	G	A	150053517	3	1	822	1	0	0	0	0	1	0	0	0	17308	943	33	2	811	2	VPS45	1	150053517	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	5174439	150053517	99197104	9	69189										
CDC42SE1	0	genome.wustl.edu	37	chr1	151027748	151027748	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	taacagggaaatcactagggCatgaaaggcaaagctggaac	12	7	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	151027748	151027748	C	T	SNP	CDC42SE1	ENST00000483763	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC42SE1	HGNC	ENSG00000197622	18	0	0	18	13	41.94	-	-	-	T	151027748	C	T	151027748	1	4	822	0	1	0	0	0	0	0	0	0	3108	725	25	4		4	CDC42SE1	1	151027748	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	974231	151027748	98222873	10	69190										
HRNR	0	genome.wustl.edu	37	chr1	152189237	152189237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagacccatgttggccactgCtggaagaccgaccggagcca	12	14	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	152189237	152189237	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.4868	p.S1623T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0	5	5	50	-	-	-	G	152189237	C	G	152189237	3	3	822	1	0	0	0	0	1	0	0	0	7410	797	28	4	3688	4	HRNR	1	152189237	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	1161489	152189237	97061384	11	69191										
FLG	0	genome.wustl.edu	37	chr1	152282080	152282080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggtagaggaaagaccctgaaCgtccagacctttcccctgac	10	13	0	5			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	152282080	152282080	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.5282	p.R1761H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	118	1	0.84	145	49	25.26	-	-	-	T	152282080	C	T	152282080	3	4	822	1	0	0	0	0	1	0	0	0	5968	536	19	1	6907	1	FLG	1	152282080	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	92843	152282080	96968541	12	69192										
CRNN	0	genome.wustl.edu	37	chr1	152383157	152383157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggctctgtctgtggctgctcCcctcataatgctgccctttc	9	15	3	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	152383157	152383157	C	T	SNP	CRNN	ENST00000271835	human	ensembl	69_37n	-1	known	missense	c.401	p.G134E	0.000	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CRNN	HGNC	ENSG00000143536	44	0	0	33	8	19.51	-	-	-	T	152383157	C	T	152383157	3	4	822	1	0	0	0	0	1	0	0	0	3922	623	22	4	1090	4	CRNN	1	152383157	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	101077	152383157	96867464	13	69193										
LOR	0	genome.wustl.edu	37	chr1	153233506	153233506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggcggcggtggcggtggcggCggcagcggcggtggtggctg	26	9	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	153233506	153233506	C	T	SNP	LOR	ENST00000368742	human	ensembl	69_37n	1	known	silent	c.81	p.G27	0.000	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	11	0	0	10	7	41.18	-	-	-	T	153233506	C	T	153233506	2	4	822	1	0	0	0	0	0	0	0	1	8963	755	27	1		1	LOR	1	153233506	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	850349	153233506	96017115	14	69194										
NES	0	genome.wustl.edu	37	chr1	156641423	156641423	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tgccccctgatttatttcttCtggagtccacagtggtgctt	9	11	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	156641423	156641423	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.2557	p.E853K	0.428	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	28	0	0	39	12	23.53	-	-	-	T	156641423	C	T	156641423	3	4	822	1	0	0	0	0	1	0	0	0	10409	922	32	2	2312	2	NES	1	156641423	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	3407917	156641423	92609198	15	69195										
OR10J3	0	genome.wustl.edu	37	chr1	159283943	159283943	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gagatgacaaaggcatcacaGaatggcaggccaaacacaga	11	9	1	4			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	159283943	159283943	G	A	SNP	OR10J3	ENST00000332217	human	ensembl	69_37n	-1	known	silent	c.507	p.F169	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266	10	0	0	26	7	21.21	-	-	-	A	159283943	G	A	159283943	2	1	822	1	0	0	0	0	0	0	0	1	10984	933	33	2		2	OR10J3	1	159283943	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	2642520	159283943	89966678	16	69196										
SELE	0	genome.wustl.edu	37	chr1	169696916	169696916	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctcttctgtccattgtccctGagatgtgcactcaagttgag	9	11	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	169696916	169696916	G	A	SNP	SELE	ENST00000333360	human	ensembl	69_37n	-1	known	nonsense	c.1432	p.Q478*	0.975	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EGF-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908	27	0	0	28	8	22.22	-	-	-	A	169696916	G	A	169696916	4	1	822	1	0	0	0	0	0	1	0	0	14101	1299	45	2	420	2	SELE	1	169696916	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	10412973	169696916	79553705	17	69197										
LRRN2	0	genome.wustl.edu	37	chr1	204587686	204587686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ccgcagctccagggtcccctCggggtacacccggtacctcc	11	19	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	204587686	204587686	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	missense	c.1435	p.E479K	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	32	0	0	42	13	23.64	-	-	-	T	204587686	C	T	204587686	3	4	822	1	0	0	0	0	1	0	0	0	9101	893	31	1	710	1	LRRN2	1	204587686	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	34890770	204587686	44662935	18	69198										
RPS6KC1	0	genome.wustl.edu	37	chr1	213446633	213446633	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aaacactcactctgtgtcttCaacagcatctttctttcccc	3	15	6	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	213446633	213446633	C	T	SNP	RPS6KC1	ENST00000490299	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	39	0	0	66	15	18.52	-	-	-	T	213446633	C	T	213446633	1	4	822	0	1	0	0	0	0	0	0	0	13744	841	29	2		2	RPS6KC1	1	213446633	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	8858947	213446633	35803988	19	69199										
OBSCN	0	genome.wustl.edu	37	chr1	228552692	228552692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctcccagcagccgtgcccccGagggtgccacagcccctcct	10	21	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	228552692	228552692	G	A	SNP	OBSCN	ENST00000441106	human	ensembl	69_37n	1	known	missense	c.2701	p.E901K	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_DH-domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub2,smart_Ig_sub,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OBSCN	HGNC	ENSG00000154358	88	0	0	69	28	28.87	-	-	-	A	228552692	G	A	228552692	3	1	822	1	0	0	0	0	1	0	0	0	10885	1045	37	1	20380	1	OBSCN	1	228552692	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	15106059	228552692	20697929	20	69200										
OR2AK2	0	genome.wustl.edu	37	chr1	248128807	248128807	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gttgctctgacaggaaatatCatgctgatccacctcattcg	8	11	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	248128807	248128807	C	T	SNP	OR2AK2	ENST00000366480	human	ensembl	69_37n	1	known	silent	c.174	p.I58	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	27	0	0	44	17	27.87	-	-	-	T	248128807	C	T	248128807	2	4	822	1	0	0	0	0	0	0	0	1	11059	816	29	2		2	OR2AK2	1	248128807	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	19576115	248128807	1121814	21	69201										
PGBD2	0	genome.wustl.edu	37	chr1	249212291	249212291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	caatgcatggcagctgcataGaatctgctgccaagatgccc	10	12	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	1	249212291	249212291	G	A	SNP	PGBD2	ENST00000329291	human	ensembl	69_37n	1	known	missense	c.1508	p.R503K	0.889	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220	30	0	0	34	21	38.18	-	-	-	A	249212291	G	A	249212291	3	1	822	1	0	0	0	0	1	0	0	0	11855	942	33	2	1514	2	PGBD2	1	249212291	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1083484	249212291	38330	22	69202										
KCNF1	0	genome.wustl.edu	37	chr2	11052864	11052864	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gtccacatgaagaagggcatCtgccccatctgcttcaagaa	9	12	3	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	11052864	11052864	C	T	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	1	known	silent	c.312	p.I104	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	47	0	0	27	9	25	-	-	-	T	11052864	C	T	11052864	2	4	822	1	0	0	0	0	0	0	0	1	8080	903	32	2		2	KCNF1	2	11052864	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		11052864	232146509	23	69203										
SLC5A6	0	genome.wustl.edu	37	chr2	27428898	27428898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggcttactgcacttaccagaGctgtatagacggtacagaca	10	10	0	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	27428898	27428898	G	T	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	missense	c.575	p.A192D	0.989	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	29	0	0	33	5	13.16	-	-	-	T	27428898	G	T	27428898	3	4	822	1	0	0	0	0	1	0	0	0	14758	971	34	4	1380	4	SLC5A6	2	27428898	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	16376034	27428898	215770475	24	69204										
PRKCE	0	genome.wustl.edu	37	chr2	45879318	45879318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ccacagcctggtcgctgcgcCatgcggtgggaccccggccg	15	17	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	45879318	45879318	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	1	known	missense	c.79	p.H27Y	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	27	0	0	2	11	84.62	-	-	-	T	45879318	C	T	45879318	3	4	822	1	0	0	0	0	1	0	0	0	12592	594	21	4	81	4	PRKCE	2	45879318	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	18450420	45879318	197320055	25	69205										
DARS	0	genome.wustl.edu	37	chr2	136680409	136680409	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	caaatgcacatttgcttataTagctgtggggactgagccag	11	8	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	136680409	136680409	T	C	SNP	DARS	ENST00000264161	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	0.991	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA-synth_arc/euk	-	no_errors	DARS	HGNC	ENSG00000115866	54	0	0	28	11	28.21	-	-	-	C	136680409	T	C	136680409	2	2	822	1	0	0	0	0	0	0	0	1	4273	1393	49	5		5	DARS	2	136680409	Silent	SNP	T	TCGA-E2-A2P6-01A-11D-A19Y-09	90801091	136680409	106518964	26	69206										
TTN	0	genome.wustl.edu	37	chr2	179463375	179463375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctttgggaaatggaggaccaGgaggggctgcaaagagccag	17	7	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	179463375	179463375	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.49265	p.P16422L	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	58	0	0	15	11	42.31	-	-	-	A	179463375	G	A	179463375	3	1	822	1	0	0	0	0	1	0	0	0	16832	1000	35	4	51008	4	TTN	2	179463375	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	42782966	179463375	63735998	27	69207										
TTN	0	genome.wustl.edu	37	chr2	179539799	179539799	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aacttcctcttctttagggaGaatgattcgtttttcttcca	6	9	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	179539799	179539799	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.30676	p.L10226F	0.012	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	61	0	0	4	5	55.56	-	-	-	A	179539799	G	A	179539799	3	1	822	1	0	0	0	0	1	0	0	0	16832	942	33	2	69981	2	TTN	2	179539799	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	76424	179539799	63659574	28	69208										
FSIP2	0	genome.wustl.edu	37	chr2	186653387	186653387	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	caggtaacttctgaagaactGaatattataattcagaatgt	7	5	2	4			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	186653387	186653387	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	silent	c.1791	p.L597	0.773	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	35	0	0	5	11	68.75	-	-	-	A	186653387	G	A	186653387	2	1	822	1	0	0	0	0	0	0	0	1	6124	1277	45	2		2	FSIP2	2	186653387	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	7113588	186653387	56545986	29	69209										
CRYGD	0	genome.wustl.edu	37	chr2	208986425	208986425	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aatctatgactctcctcagaGagcccactctggcattcgtg	8	13	4	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	2	208986425	208986425	G	A	SNP	CRYGD	ENST00000264376	human	ensembl	69_37n	-1	known	missense	c.497	p.S166F	0.994	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231	14	0	0	11	4	26.67	-	-	-	A	208986425	G	A	208986425	3	1	822	1	0	0	0	0	1	0	0	0	3947	942	33	2	31	2	CRYGD	2	208986425	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	22333038	208986425	34212948	30	69210										
OGG1	0	genome.wustl.edu	37	chr3	9791867	9791867	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttaaacagcaccgtgtgggcGaggccttaagggtcgtggtc	15	9	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	9791867	9791867	G	A	SNP	OGG1	ENST00000436092	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	OGG1	HGNC	ENSG00000114026	16	0	0	2	6	75	-	-	-	A	9791867	G	A	9791867	1	1	822	0	1	0	0	0	0	0	0	0	10918	1073	37	1		1	OGG1	3	9791867	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		9791867	188230563	31	69211										
SYN2	0	genome.wustl.edu	37	chr3	12226464	12226464	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cgttctgaactcccagatctGagaaggaactagtgttggtg	12	8	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	12226464	12226464	G	C	SNP	SYN2	ENST00000425297	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	8	0	0	7	5	41.67	-	-	-	C	12226464	G	C	12226464	1	2	822	0	1	0	0	0	0	0	0	0	15533	1305	45	2		2	SYN2	3	12226464	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	2434597	12226464	185795966	32	69212										
SYN2	0	genome.wustl.edu	37	chr3	12226682	12226682	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cttccagatgggttgcataaGaatcaggtccttaaatacct	8	9	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	12226682	12226682	G	C	SNP	SYN2	ENST00000425297	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.161	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	15	0	0	14	9	39.13	-	-	-	C	12226682	G	C	12226682	1	2	822	0	1	0	0	0	0	0	0	0	15533	957	33	2		2	SYN2	3	12226682	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	218	12226682	185795748	33	69213										
MRPS25	0	genome.wustl.edu	37	chr3	15084312	15084312	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttgaagggcatcaaacagtcTccttttctaatgacactccc	6	12	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	15084312	15084312	T	C	SNP	MRPS25	ENST00000496484	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MRPS25	HGNC	ENSG00000131368	59	0	0	36	27	42.86	-	-	-	C	15084312	T	C	15084312	1	2	822	0	1	0	0	0	0	0	0	0	9908	1566	54	5		5	MRPS25	3	15084312	RNA	SNP	T	TCGA-E2-A2P6-01A-11D-A19Y-09	2857630	15084312	182938118	34	69214										
KCNH8	0	genome.wustl.edu	37	chr3	19432101	19432101	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	taatcgctgccctgccttttGatcttctgtatgctttcaac	6	12	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	19432101	19432101	G	A	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	1	known	missense	c.940	p.D314N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	32	0	0	6	8	57.14	-	-	-	A	19432101	G	A	19432101	3	1	822	1	0	0	0	0	1	0	0	0	8092	1290	45	2	962	2	KCNH8	3	19432101	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	4347789	19432101	178590329	35	69215										
SCAP	0	genome.wustl.edu	37	chr3	47484391	47484391	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aagatgcagaaccctgtgaaGaggatgatggggatgggata	16	4	0	5			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	47484391	47484391	G	A	SNP	SCAP	ENST00000265565	human	ensembl	69_37n	-1	known	silent	c.93	p.L31	1.000	NULL	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650	58	0	0	30	15	33.33	-	-	-	A	47484391	G	A	47484391	2	1	822	1	0	0	0	0	0	0	0	1	13964	929	33	2		2	SCAP	3	47484391	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	28052290	47484391	150538039	36	69216										
KPNA1	0	genome.wustl.edu	37	chr3	122146503	122146503	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agggcaacctgtacaatcttAgagtccatgaccgtgaggag	12	9	1	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	122146503	122146503	A	G	SNP	KPNA1	ENST00000344337	human	ensembl	69_37n	-1	known	silent	c.1311	p.S437	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA1	HGNC	ENSG00000114030	37	0	0	15	10	40	-	-	-	G	122146503	A	G	122146503	2	3	822	1	0	0	0	0	0	0	0	1	8482	407	15	5		5	KPNA1	3	122146503	Silent	SNP	A	TCGA-E2-A2P6-01A-11D-A19Y-09	74662112	122146503	75875927	37	69217										
DZIP1L	0	genome.wustl.edu	37	chr3	137800589	137800589	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cacttaccttccaccttcctGagagacaaggactggatctg	8	13	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	137800589	137800589	G	C	SNP	DZIP1L	ENST00000327532	human	ensembl	69_37n	-1	known	silent	c.1221	p.L407	0.159	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	35	0	0	8	10	55.56	-	-	-	C	137800589	G	C	137800589	2	2	822	1	0	0	0	0	0	0	0	1	4899	1277	45	2		2	DZIP1L	3	137800589	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	15654086	137800589	60221841	38	69218										
HPS3	0	genome.wustl.edu	37	chr3	148871409	148871409	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gaacctgaagccattccagaGagaagacagtcacccaagag	10	11	1	5			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	148871409	148871409	G	A	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	1	known	silent	c.1374	p.E458	0.990	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	38	0	0	19	17	47.22	-	-	-	A	148871409	G	A	148871409	2	1	822	1	0	0	0	0	0	0	0	1	7391	933	33	2		2	HPS3	3	148871409	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	11070820	148871409	49151021	39	69219										
MASP1	0	genome.wustl.edu	37	chr3	186968079	186968079	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttactccacgtcccatccttCagacactcaatctggaatgt	5	14	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	3	186968079	186968079	C	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	silent	c.1050	p.L350	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	23	0	0	10	9	47.37	-	-	-	T	186968079	C	T	186968079	2	4	822	1	0	0	0	0	0	0	0	1	9393	813	29	2		2	MASP1	3	186968079	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	38096670	186968079	11054351	40	69220										
LRPAP1	0	genome.wustl.edu	37	chr4	3526751	3526751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cttcagatcagcgtggagctCggccagcctcacgggaggaa	14	12	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	4	3526751	3526751	C	T	SNP	LRPAP1	ENST00000500728	human	ensembl	69_37n	-1	known	missense	c.232	p.E78K	1.000	pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	pfam_Alpha_2_MRAP_C,pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	-	no_errors	LRPAP1	HGNC	ENSG00000163956	20	0	0	16	7	30.43	-	-	-	T	3526751	C	T	3526751	3	4	822	1	0	0	0	0	1	0	0	0	9030	893	31	1	869	1	LRPAP1	4	3526751	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		3526751	187627525	41	69221										
COX7B2	0	genome.wustl.edu	37	chr4	46737164	46737164	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	catgctttgcagaatgctttGaatcttgagactgcttagtg	10	7	1	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	4	46737164	46737164	G	A	SNP	COX7B2	ENST00000302930	human	ensembl	69_37n	-1	known	nonsense	c.46	p.Q16*	0.002	pfam_Cyt_c_oxidase_suVIIB	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	-	no_errors	COX7B2	HGNC	ENSG00000170516	52	0	0	18	16	47.06	-	-	-	A	46737164	G	A	46737164	4	1	822	1	0	0	0	0	0	1	0	0	3813	1299	45	2	203	2	COX7B2	4	46737164	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	43210413	46737164	144417112	42	69222										
EXOC1	0	genome.wustl.edu	37	chr4	56765964	56765964	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aaatctcatgtctagaagcaGaaaaaaaagaagccaaacaa	6	7	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	4	56765964	56765964	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	69_37n	1	known	missense	c.2251	p.E751K	1.000	pfam_Exocyst_Exoc1	pfam_Exocyst_Exoc1	-	no_errors	EXOC1	HGNC	ENSG00000090989	19	0	0	16	15	48.39	-	-	-	A	56765964	G	A	56765964	3	1	822	1	0	0	0	0	1	0	0	0	5337	943	33	2	2313	2	EXOC1	4	56765964	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	10028800	56765964	134388312	43	69223										
PRSS12	0	genome.wustl.edu	37	chr4	119273484	119273484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aaaagttgtggcgctgtcctCgcagctgagcccagctcgct	12	13	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	4	119273484	119273484	C	T	SNP	PRSS12	ENST00000296498	human	ensembl	69_37n	-1	known	missense	c.392	p.R131Q	0.224	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Srcr_rcpt,pfam_Peptidase_S1_S6,pfam_Kringle,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Kringle,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Srcr_rcpt,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099	15	0	0	8	5	38.46	-	-	-	T	119273484	C	T	119273484	3	4	822	1	0	0	0	0	1	0	0	0	12695	884	31	1	2287	1	PRSS12	4	119273484	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	62507520	119273484	71880792	44	69224										
TNPO1	0	genome.wustl.edu	37	chr5	72112537	72112537	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gaggcagtgccgcttcggccGaaggcccgagcgcccgaggc	17	15	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	72112537	72112537	G	A	SNP	TNPO1	ENST00000515483	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TNPO1	HGNC	ENSG00000083312	39	0	0	29	11	27.5	-	-	-	A	72112537	G	A	72112537	1	1	822	0	1	0	0	0	0	0	0	0	16430	1073	37	1		1	TNPO1	5	72112537	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		72112537	108802723	45	69225										
COL4A3BP	0	genome.wustl.edu	37	chr5	74801856	74801857	+	Frame_Shift_Ins	INS	-	-	T													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcctctgcagccatactctgINStttcatcttcagatttgtag							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	74801856	74801857	-	T	INS	COL4A3BP	ENST00000380494	human	ensembl	69_37n	-1	known	frame_shift_ins	c.566_565	p.T189fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_START_lipid-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd	-	no_errors	COL4A3BP	HGNC	ENSG00000113163	26	0	0	18	13	41.94	-	-	-	T	74801857	-	T	74801856	7	5	822	1	0	1	1	0	0	0	0	0	3722	1377	48	0	1756	0	COL4A3BP	5	74801856	Frame_Shift_Ins	INS	-	TCGA-E2-A2P6-01A-11D-A19Y-09	2689319	74801856	106113404	46	69226										
VCAN	0	genome.wustl.edu	37	chr5	82868278	82868278	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ccagccagacagcttcttttCtgctggagaagactgtgttg	11	10	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	82868278	82868278	C	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.9779	p.S3260F	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	47	0	0	14	9	39.13	-	-	-	T	82868278	C	T	82868278	3	4	822	1	0	0	0	0	1	0	0	0	17235	913	32	2	9825	2	VCAN	5	82868278	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	8066422	82868278	98046982	47	69227										
SRP19	0	genome.wustl.edu	37	chr5	112196928	112196928	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aggtgccggaacaaacaggcGatgagaaatcgcggacgcgg	16	9	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	112196928	112196928	G	A	SNP	SRP19	ENST00000503445	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRP19	HGNC	ENSG00000153037	47	0	0	20	13	39.39	-	-	-	A	112196928	G	A	112196928	1	1	822	0	1	0	0	0	0	0	0	0	15245	1073	37	1		1	SRP19	5	112196928	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	29328650	112196928	68718332	48	69228										
TNFAIP8	0	genome.wustl.edu	37	chr5	118728890	118728890	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctgttaaatgaatgcagagaGatgctgcaccaaatcattca	8	8	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	118728890	118728890	G	C	SNP	TNFAIP8	ENST00000504771	human	ensembl	69_37n	1	known	missense	c.411	p.E137D	0.988	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8	HGNC	ENSG00000145779	67	0	0	34	28	45.16	-	-	-	C	118728890	G	C	118728890	3	2	822	1	0	0	0	0	1	0	0	0	16371	933	33	2	422	2	TNFAIP8	5	118728890	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	6531962	118728890	62186370	49	69229										
PCDHB7	0	genome.wustl.edu	37	chr5	140554697	140554697	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctggaggctccgggacaaatGagttcaagtttctgaaacca	11	9	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	140554697	140554697	G	T	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	nonsense	c.2281	p.E761*	0.999	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	197	0	0	164	32	16.33	-	-	-	T	140554697	G	T	140554697	4	4	822	1	0	0	0	0	0	1	0	0	11620	1291	45	2	2283	2	PCDHB7	5	140554697	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	21825807	140554697	40360563	50	69230										
FCHSD1	0	genome.wustl.edu	37	chr5	141019951	141019951	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aggacctactcctggtctctCattgttgacccctccccttt	6	16	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	141019951	141019951	C	T	SNP	FCHSD1	ENST00000523856	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948	26	0	0	13	10	43.48	-	-	-	T	141019951	C	T	141019951	1	4	822	0	1	0	0	0	0	0	0	0	5835	841	29	2		2	FCHSD1	5	141019951	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	465254	141019951	39895309	51	69231										
FAM153B	0	genome.wustl.edu	37	chr5	175536140	175536140	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acccagccacactggcaaagCgtacgtattctgggatcatc	9	13	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	5	175536140	175536140	C	T	SNP	FAM153B	ENST00000253490	human	ensembl	69_37n	1	known	nonsense	c.964	p.Q322*	0.000	prints_FAM153	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230	16	0	0	15	9	37.5	-	-	-	T	175536140	C	T	175536140	4	4	822	1	0	0	0	0	0	1	0	0	5501	782	27	1	1034	1	FAM153B	5	175536140	Nonsense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	34516189	175536140	5379120	52	69232										
F13A1	0	genome.wustl.edu	37	chr6	6152107	6152107	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	caggtgtacccagacatttcGcagggtttcttttaaaggat	10	8	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	6152107	6152107	G	A	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	nonsense	c.1984	p.R662*	0.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	15	0	0	7	9	56.25	-	-	-	A	6152107	G	A	6152107	4	1	822	1	0	0	0	0	0	1	0	0	5377	1095	38	1	222	1	F13A1	6	6152107	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		6152107	164962960	53	69233										
RREB1	0	genome.wustl.edu	37	chr6	7189489	7189489	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcgccacatgctggtgcactCtggcgagaggccttacaagt	12	12	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	7189489	7189489	C	T	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	missense	c.359	p.S120F	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	29	0	0	12	6	33.33	-	-	-	T	7189489	C	T	7189489	3	4	822	1	0	0	0	0	1	0	0	0	13765	913	32	2	369	2	RREB1	6	7189489	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	1037382	7189489	163925578	54	69234										
BTN3A1	0	genome.wustl.edu	37	chr6	26406396	26406396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gctgctctccgaatacacaaCgtcacagcctctgacagtgg	9	14	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	26406396	26406396	C	T	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	1	known	silent	c.345	p.N115	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	19	0	0	10	6	37.5	-	-	-	T	26406396	C	T	26406396	2	4	822	1	0	0	0	0	0	0	0	1	1571	535	19	1		1	BTN3A1	6	26406396	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	19216907	26406396	144708671	55	69235										
UBR2	0	genome.wustl.edu	37	chr6	42620364	42620364	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acataatggatatgcctggtCagagtccatgctgcaaaggg	12	8	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	42620364	42620364	C	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.2750	p.S917L	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	24	0	0	27	4	12.9	-	-	-	T	42620364	C	T	42620364	3	4	822	1	0	0	0	0	1	0	0	0	16999	838	29	2	2994	2	UBR2	6	42620364	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	16213968	42620364	128494703	56	69236										
PEX6	0	genome.wustl.edu	37	chr6	42934590	42934590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggcatagagatcccctaccaCaaagccctagggaaccacag	9	14	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	42934590	42934590	C	T	SNP	PEX6	ENST00000304611	human	ensembl	69_37n	-1	known	missense	c.1891	p.V631M	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587	27	0	0	17	10	37.04	-	-	-	T	42934590	C	T	42934590	3	4	822	1	0	0	0	0	1	0	0	0	11824	478	17	4	1087	4	PEX6	6	42934590	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	314226	42934590	128180477	57	69237										
ZNF292	0	genome.wustl.edu	37	chr6	87955222	87955222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ataactttttttttttaaggGaacttactctcttttggagt	6	5	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	87955222	87955222	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.880	p.E294K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	18	0	0	3	3	50	-	-	-	A	87955222	G	A	87955222	3	1	822	1	0	0	0	0	1	0	0	0	17922	1188	41	2	906	2	ZNF292	6	87955222	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	45020632	87955222	83159845	58	69238										
USP45	0	genome.wustl.edu	37	chr6	99924030	99924030	+	Frame_Shift_Del	DEL	C	C	-													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aaacctgacctttgtttcttCtgtcctcactgcatccagaa							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	99924030	99924030	C	-	DEL	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	frame_shift_del	c.922	p.E308fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	49	0	0	14	2	12.5	-	-	-	-	99924030	C	-	99924030	7	5	822	1	0	1	0	1	0	0	0	0	17173	922	32	0	1562	0	USP45	6	99924030	Frame_Shift_Del	DEL	C	TCGA-E2-A2P6-01A-11D-A19Y-09	11968808	99924030	71191037	59	69239										
ASCC3	0	genome.wustl.edu	37	chr6	100988257	100988257	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tggcaaatctgtatattcttCtgcatcctgaaaaaaaaaaa	5	7	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	100988257	100988257	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.5557	p.E1853K	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	24	0	0	19	8	29.63	-	-	-	T	100988257	C	T	100988257	3	4	822	1	0	0	0	0	1	0	0	0	1037	922	32	2	1075	2	ASCC3	6	100988257	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	1064227	100988257	70126810	60	69240										
KIAA1919	0	genome.wustl.edu	37	chr6	111583513	111583513	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	caagatttggcaacaaacgtGaaccgaaatatcagtagtct	8	8	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	111583513	111583513	G	A	SNP	KIAA1919	ENST00000368847	human	ensembl	69_37n	1	known	silent	c.81	p.V27	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	69	0	0	34	27	44.26	-	-	-	A	111583513	G	A	111583513	2	1	822	1	0	0	0	0	0	0	0	1	8314	1277	45	2		2	KIAA1919	6	111583513	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	10595256	111583513	59531554	61	69241										
REV3L	0	genome.wustl.edu	37	chr6	111697741	111697741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agttatctagacctttttctGtatttttgtttgtctgtgaa	7	5	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	6	111697741	111697741	G	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.1817	p.T606K	0.006	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	40	0	0	21	3	12.5	-	-	-	T	111697741	G	T	111697741	3	4	822	1	0	0	0	0	1	0	0	0	13323	1377	48	4	7655	4	REV3L	6	111697741	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	114228	111697741	59417326	62	69242										
SEPT7	0	genome.wustl.edu	37	chr7	35942763	35942763	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gaggaaaaacgtcgtcagttCgaggatgagaaagcaaactg	13	6	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	35942763	35942763	C	T	SNP	SEPT7	ENST00000399034	human	ensembl	69_37n	1	known	silent	c.1215	p.F405	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin7	-	no_errors	SEPT7	HGNC	ENSG00000122545	32	0	0	15	11	42.31	-	-	-	T	35942763	C	T	35942763	2	4	822	1	0	0	0	0	0	0	0	1	14157	883	31	1		1	SEPT7	7	35942763	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		35942763	123195900	63	69243										
IGFBP1	0	genome.wustl.edu	37	chr7	45928353	45928353	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tggcagtgcgcgccctgctcCgccgagaagctcgcgctctg	14	16	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	45928353	45928353	C	T	SNP	IGFBP1	ENST00000275525	human	ensembl	69_37n	1	known	silent	c.102	p.S34	0.000	pfam_IGFBP-like,smart_IGFBP-like	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678	26	0	0	9	7	43.75	-	-	-	T	45928353	C	T	45928353	2	4	822	1	0	0	0	0	0	0	0	1	7632	639	23	1		1	IGFBP1	7	45928353	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	9985590	45928353	113210310	64	69244										
PCLO	0	genome.wustl.edu	37	chr7	82467655	82467655	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tccaagatcatagttaatttGaagctttaggagagagaaaa	9	4	1	4			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	82467655	82467655	G	A	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	nonsense	c.14101	p.Q4701*	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	62	0	0	29	11	27.5	-	-	-	A	82467655	G	A	82467655	4	1	822	1	0	0	0	0	0	1	0	0	11656	1299	45	2	1388	2	PCLO	7	82467655	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	36539302	82467655	76671008	65	69245										
PLOD3	0	genome.wustl.edu	37	chr7	100860012	100860012	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aagaactccgcagagcgcagGaaacgcaggtacccctcggt	12	13	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	100860012	100860012	G	A	SNP	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	silent	c.165	p.F55	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	26	0	0	17	14	45.16	-	-	-	A	100860012	G	A	100860012	2	1	822	1	0	0	0	0	0	0	0	1	12177	1165	41	2		2	PLOD3	7	100860012	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	18392357	100860012	58278651	66	69246										
FAM115A	0	genome.wustl.edu	37	chr7	143573620	143573620	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctctccaataagaagcagttCacatggaacagcatcttcgg	8	11	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	143573620	143573620	C	T	SNP	FAM115A	ENST00000479870	human	ensembl	69_37n	-1	known	missense	c.82	p.E28K	1.000	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420	34	0	0	17	10	37.04	-	-	-	T	143573620	C	T	143573620	3	4	822	1	0	0	0	0	1	0	0	0	5445	835	29	2	2715	2	FAM115A	7	143573620	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	42713608	143573620	15565043	67	69247										
HTR5A	0	genome.wustl.edu	37	chr7	154863224	154863224	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcctacgccgtgttctccacCgtaggcgccttctacctgcc	8	18	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	7	154863224	154863224	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	1	known	silent	c.615	p.T205	0.931	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	33	0	0	20	9	31.03	-	-	-	T	154863224	C	T	154863224	2	4	822	1	0	0	0	0	0	0	0	1	7504	639	23	1		1	HTR5A	7	154863224	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	11289604	154863224	4275439	68	69248										
USP17L2	0	genome.wustl.edu	37	chr8	11995160	11995160	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcactcttctggatgtaaaaGaggacataggcctgttgact	10	8	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	11995160	11995160	G	C	SNP	USP17L2	ENST00000333796	human	ensembl	69_37n	-1	known	silent	c.1110	p.L370	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19	-	no_errors	USP17L2	HGNC	ENSG00000223443	57	0	0	42	13	23.64	-	-	-	C	11995160	G	C	11995160	2	2	822	1	0	0	0	0	0	0	0	1	17145	929	33	2		2	USP17L2	8	11995160	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		11995160	134368862	69	69249										
SLC20A2	0	genome.wustl.edu	37	chr8	42294814	42294814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gtcctctggggccgatgagtCcgcagctcgaaaggtggcgt	16	11	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	42294814	42294814	C	T	SNP	SLC20A2	ENST00000342228	human	ensembl	69_37n	-1	known	missense	c.1216	p.D406N	0.046	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575	88	0	0	77	9	10.47	-	-	-	T	42294814	C	T	42294814	3	4	822	1	0	0	0	0	1	0	0	0	14528	855	30	2	758	2	SLC20A2	8	42294814	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	30299654	42294814	104069208	70	69250										
MTERFD1	0	genome.wustl.edu	37	chr8	97263176	97263176	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cttcagagaaaattgcatgaTtttttgtcaggaatgctccc	8	8	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	97263176	97263176	T	G	SNP	MTERFD1	ENST00000287025	human	ensembl	69_37n	-1	known	missense	c.635	p.N212T	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD1	HGNC	ENSG00000156469	51	0	0	21	19	47.5	-	-	-	G	97263176	T	G	97263176	3	3	822	1	0	0	0	0	1	0	0	0	9991	1493	52	5	638	5	MTERFD1	8	97263176	Missense_Mutation	SNP	T	TCGA-E2-A2P6-01A-11D-A19Y-09	54968362	97263176	49100846	71	69251										
CSMD3	0	genome.wustl.edu	37	chr8	113516056	113516056	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aatccagtgtaactaacagaTccatcactccgaaaagccaa	5	12	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	113516056	113516056	T	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.5046	p.G1682	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	46	0	0	10	9	47.37	-	-	-	A	113516056	T	A	113516056	2	1	822	1	0	0	0	0	0	0	0	1	3978	1422	50	5		5	CSMD3	8	113516056	Silent	SNP	T	TCGA-E2-A2P6-01A-11D-A19Y-09	16252880	113516056	32847966	72	69252										
CSMD3	0	genome.wustl.edu	37	chr8	113585757	113585757	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cacaagttgaaagccttcatCtgtcccttcagtatcggaat	7	11	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	113585757	113585757	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.4015	p.D1339N	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	19	0	0	11	5	31.25	-	-	-	T	113585757	C	T	113585757	3	4	822	1	0	0	0	0	1	0	0	0	3978	913	32	2	7300	2	CSMD3	8	113585757	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	69701	113585757	32778265	73	69253										
JRK	0	genome.wustl.edu	37	chr8	143762039	143762039	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggggtgagccggggaggccaGagggatacctgcagggcaca	20	9	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	8	143762039	143762039	G	C	SNP	JRK	ENST00000585503	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	42	0	0	13	15	53.57	-	-	-	C	143762039	G	C	143762039	1	2	822	0	1	0	0	0	0	0	0	0	8018	957	33	2		2	JRK	8	143762039	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	30176282	143762039	2601983	74	69254										
KANK1	0	genome.wustl.edu	37	chr9	711674	711674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agagaaaaggcagttggtctCacagctgaaaaaccaaaggg	12	7	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	9	711674	711674	C	T	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	missense	c.908	p.S303L	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	34	0	0	15	8	34.78	-	-	-	T	711674	C	T	711674	3	4	822	1	0	0	0	0	1	0	0	0	8030	838	29	2	914	2	KANK1	9	711674	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		711674	140501757	75	69255										
PLIN2	0	genome.wustl.edu	37	chr9	19108734	19108734	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gatgtcaagtctatggtggtGaaatcaaacacctgtaaaag	10	6	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	9	19108734	19108734	G	A	SNP	PLIN2	ENST00000464326	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.917	-	-	-	no_errors	PLIN2	HGNC	ENSG00000147872	23	0	0	16	7	30.43	-	-	-	A	19108734	G	A	19108734	1	1	822	0	1	0	0	0	0	0	0	0	12164	1305	45	2		2	PLIN2	9	19108734	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	18397060	19108734	122104697	76	69256										
KIF24	0	genome.wustl.edu	37	chr9	34256034	34256034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	catatgtatggtggtgaaggGctttcctgggaaaccccagg	14	8	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	9	34256034	34256034	G	A	SNP	KIF24	ENST00000379166	human	ensembl	69_37n	-1	known	missense	c.3571	p.P1191S	0.139	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638	37	0	0	18	13	41.94	-	-	-	A	34256034	G	A	34256034	3	1	822	1	0	0	0	0	1	0	0	0	8344	1203	42	4	547	4	KIF24	9	34256034	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	15147300	34256034	106957397	77	69257										
TRPM3	0	genome.wustl.edu	37	chr9	73233936	73233936	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagttcttcagctcatacgtCagcagtttcatggccagctg	9	12	5	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	9	73233936	73233936	C	T	SNP	TRPM3	ENST00000396280	human	ensembl	69_37n	-1	known	missense	c.1714	p.D572N	1.000	NULL	pfam_Ion_trans_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRPM3	HGNC	ENSG00000083067	36	0	0	15	9	37.5	-	-	-	T	73233936	C	T	73233936	3	4	822	1	0	0	0	0	1	0	0	0	16683	813	29	2	2994	2	TRPM3	9	73233936	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	38977902	73233936	67979495	78	69258										
ZNF22	0	genome.wustl.edu	37	chr10	45499206	45499206	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcaaatctcattcagcaccaGagaattcatactggagaaaa	6	9	4	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	10	45499206	45499206	G	A	SNP	ZNF22	ENST00000298299	human	ensembl	69_37n	1	known	silent	c.390	p.Q130	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF22	HGNC	ENSG00000165512	25	0	0	17	11	39.29	-	-	-	A	45499206	G	A	45499206	2	1	822	1	0	0	0	0	0	0	0	1	17870	933	33	2		2	ZNF22	10	45499206	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		45499206	90035541	79	69259										
IFIT3	0	genome.wustl.edu	37	chr10	91098974	91098974	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	accatctggataatcacccaGagaaacagttctctactgat	6	11	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	10	91098974	91098974	G	C	SNP	IFIT3	ENST00000371811	human	ensembl	69_37n	1	known	missense	c.562	p.E188Q	0.000	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917	16	0	0	12	6	33.33	-	-	-	C	91098974	G	C	91098974	3	2	822	1	0	0	0	0	1	0	0	0	7578	943	33	2	577	2	IFIT3	10	91098974	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	45599768	91098974	44435773	80	69260										
FGF8	0	genome.wustl.edu	37	chr10	103534571	103534571	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttcccgctggtgcggctgtaGagttggtaggtccggatgag	17	8	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	10	103534571	103534571	G	C	SNP	FGF8	ENST00000320185	human	ensembl	69_37n	-1	known	silent	c.255	p.L85	0.998	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF8	HGNC	ENSG00000107831	40	0	0	23	15	39.47	-	-	-	C	103534571	G	C	103534571	2	2	822	1	0	0	0	0	0	0	0	1	5904	929	33	2		2	FGF8	10	103534571	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	12435597	103534571	32000176	81	69261										
NT5C2	0	genome.wustl.edu	37	chr10	104853661	104853661	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tatatgtggcactttgctgaGagattaccaaagctttcact	8	8	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	10	104853661	104853661	G	C	SNP	NT5C2	ENST00000469228	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	NT5C2	HGNC	ENSG00000076685	21	0	0	3	3	50	-	-	-	C	104853661	G	C	104853661	1	2	822	0	1	0	0	0	0	0	0	0	10760	957	33	2		2	NT5C2	10	104853661	RNA	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1319090	104853661	30681086	82	69262										
GPAM	0	genome.wustl.edu	37	chr10	113915732	113915732	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tgtgaacaaagatggcagcaGagctgtaggcctccagcaaa	12	9	0	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	10	113915732	113915732	G	C	SNP	GPAM	ENST00000348367	human	ensembl	69_37n	-1	known	missense	c.2201	p.S734C	0.998	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GPAM	HGNC	ENSG00000119927	71	0	0	19	22	53.66	-	-	-	C	113915732	G	C	113915732	3	2	822	1	0	0	0	0	1	0	0	0	6638	942	33	2	297	2	GPAM	10	113915732	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	9062071	113915732	21619015	83	69263										
DCDC1	0	genome.wustl.edu	37	chr11	31312200	31312200	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	taattaaaaattacctttttCattgtttcttttcccactgt	2	8	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	31312200	31312200	C	G	SNP	DCDC1	ENST00000452803	human	ensembl	69_37n	-1	known	missense	c.954	p.M318I	0.976	superfamily_Doublecortin_dom	superfamily_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000188682	51	0	0	17	6	26.09	-	-	-	G	31312200	C	G	31312200	3	3	822	1	0	0	0	0	1	0	0	0	4315	826	29	2	122	2	DCDC1	11	31312200	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		31312200	103694316	84	69264										
MADD	0	genome.wustl.edu	37	chr11	47330180	47330180	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aagccaagcataaaggagaaGctggcaggcagccccattcg	12	11	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	47330180	47330180	G	C	SNP	MADD	ENST00000311027	human	ensembl	69_37n	1	known	missense	c.3798	p.K1266N	0.084	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	36	0	0	13	12	48	-	-	-	C	47330180	G	C	47330180	3	2	822	1	0	0	0	0	1	0	0	0	9219	962	34	4	3892	4	MADD	11	47330180	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	16017980	47330180	87676336	85	69265										
OR5M11	0	genome.wustl.edu	37	chr11	56309909	56309909	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggactcacaaaggtgtaaaaGacagctattattttagattc	8	6	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	56309909	56309909	G	C	SNP	OR5M11	ENST00000528616	human	ensembl	69_37n	-1	known	silent	c.825	p.V275	0.981	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223	18	0	0	7	10	58.82	-	-	-	C	56309909	G	C	56309909	2	2	822	1	0	0	0	0	0	0	0	1	11247	929	33	2		2	OR5M11	11	56309909	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	8979729	56309909	78696607	86	69266										
GAL3ST3	0	genome.wustl.edu	37	chr11	65810977	65810977	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagaactggtgctcgcagctCgggtgcggcagggccaccgt	16	13	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	65810977	65810977	C	T	SNP	GAL3ST3	ENST00000312006	human	ensembl	69_37n	-1	known	silent	c.297	p.P99	0.840	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229	46	0	0	11	22	66.67	-	-	-	T	65810977	C	T	65810977	2	4	822	1	0	0	0	0	0	0	0	1	6249	871	31	1		1	GAL3ST3	11	65810977	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	9501068	65810977	69195539	87	69267										
SYT12	0	genome.wustl.edu	37	chr11	66811263	66811263	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggtggtggagctgaagctttCtgtgcttgacctcccgctgc	14	11	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	66811263	66811263	C	T	SNP	SYT12	ENST00000393946	human	ensembl	69_37n	1	known	missense	c.776	p.S259F	0.973	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT12	HGNC	ENSG00000173227	20	0	0	21	7	25	-	-	-	T	66811263	C	T	66811263	3	4	822	1	0	0	0	0	1	0	0	0	15560	913	32	2	790	2	SYT12	11	66811263	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	1000286	66811263	68195253	88	69268										
KDM2A	0	genome.wustl.edu	37	chr11	66985342	66985342	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctcaagcagggctataccttCgtcattccctcaggtaagca	8	13	3	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	66985342	66985342	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	silent	c.828	p.F276	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	44	0	0	57	12	17.39	-	-	-	T	66985342	C	T	66985342	2	4	822	1	0	0	0	0	0	0	0	1	8178	883	31	1		1	KDM2A	11	66985342	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	174079	66985342	68021174	89	69269										
PITPNM1	0	genome.wustl.edu	37	chr11	67269467	67269467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agtcatcagacagtggccctCggcccgtcttgaccgagtga	12	13	3	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	67269467	67269467	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	missense	c.506	p.R169Q	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	35	0	0	19	13	40.62	-	-	-	T	67269467	C	T	67269467	3	4	822	1	0	0	0	0	1	0	0	0	12024	884	31	1	3308	1	PITPNM1	11	67269467	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	284125	67269467	67737049	90	69270										
GDPD4	0	genome.wustl.edu	37	chr11	76928297	76928297	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acaactcggacaggaggtttCatggctatgtgcaaatctat	10	8	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	76928297	76928297	C	T	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.1557	p.M519I	0.000	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	51	0	0	57	26	31.33	-	-	-	T	76928297	C	T	76928297	3	4	822	1	0	0	0	0	1	0	0	0	6378	841	29	2		2	GDPD4	11	76928297	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	9658830	76928297	58078219	91	69271										
CARD16	0	genome.wustl.edu	37	chr11	104915369	104915369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tggataaacagctttctcttCtccttcaggaccttgtctgt	7	11	4	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	11	104915369	104915369	C	G	SNP	CARD16	ENST00000375706	human	ensembl	69_37n	-1	known	missense	c.24	p.E8D	0.003	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD16	HGNC	ENSG00000204397	56	0	0	6	11	64.71	-	-	-	G	104915369	C	G	104915369	3	3	822	1	0	0	0	0	1	0	0	0	2672	912	32	2	601	2	CARD16	11	104915369	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	27987072	104915369	30091147	92	69272										
SLCO1A2	0	genome.wustl.edu	37	chr12	21445246	21445246	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agatgaatttcctgatgtttGaatacagctgcaattttgga	9	5	0	4			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	21445246	21445246	G	A	SNP	SLCO1A2	ENST00000307378	human	ensembl	69_37n	-1	known	nonsense	c.1462	p.Q488*	0.155	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	35	0	0	10	7	41.18	-	-	-	A	21445246	G	A	21445246	4	1	822	1	0	0	0	0	0	1	0	0	14811	1299	45	2	566	2	SLCO1A2	12	21445246	Nonsense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		21445246	112406649	93	69273										
ABCC9	0	genome.wustl.edu	37	chr12	21962817	21962817	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggtagagatttgaccatattCttcagctgagcaatttctaa	8	7	3	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	21962817	21962817	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	silent	c.4284	p.K1428	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	58	0	0	18	10	35.71	-	-	-	T	21962817	C	T	21962817	2	4	822	1	0	0	0	0	0	0	0	1	59	912	32	2		2	ABCC9	12	21962817	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	517571	21962817	111889078	94	69274										
CNOT2	0	genome.wustl.edu	37	chr12	70729251	70729251	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tgtgacaggattggacctttCagatttcccagcattagcag	10	9	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	70729251	70729251	C	T	SNP	CNOT2	ENST00000229195	human	ensembl	69_37n	1	known	missense	c.683	p.S228L	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596	57	0	0	19	25	56.82	-	-	-	T	70729251	C	T	70729251	3	4	822	1	0	0	0	0	1	0	0	0	3649	838	29	2	709	2	CNOT2	12	70729251	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	48766434	70729251	63122644	95	69275										
NEDD1	0	genome.wustl.edu	37	chr12	97303610	97303610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	atgcttcatctatgacattgGtggataaattcaacccacac	6	10	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	97303610	97303610	G	A	SNP	NEDD1	ENST00000557644	human	ensembl	69_37n	1	known	missense	c.94	p.V32M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NEDD1	HGNC	ENSG00000139350	22	0	0	7	6	46.15	-	-	-	A	97303610	G	A	97303610	3	1	822	1	0	0	0	0	1	0	0	0	10381	1261	44	4	100	4	NEDD1	12	97303610	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	26574359	97303610	36548285	96	69276										
MAPKAPK5	0	genome.wustl.edu	37	chr12	112323732	112323732	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctccacaggctcctgaaggtCaaaccggaggagagactcac	11	13	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	112323732	112323732	C	G	SNP	MAPKAPK5	ENST00000202788	human	ensembl	69_37n	1	known	silent	c.861	p.V287	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK5	HGNC	ENSG00000089022	72	0	0	29	22	43.14	-	-	-	G	112323732	C	G	112323732	2	3	822	1	0	0	0	0	0	0	0	1	9362	813	29	2		2	MAPKAPK5	12	112323732	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	15020122	112323732	21528163	97	69277										
NAA25	0	genome.wustl.edu	37	chr12	112516491	112516491	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cattttttcgaccattctctCagcaaggggcagaaacattg	8	10	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	112516491	112516491	C	T	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	missense	c.532	p.E178K	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	85	0	0	39	29	42.65	-	-	-	T	112516491	C	T	112516491	3	4	822	1	0	0	0	0	1	0	0	0	10193	835	29	2	2462	2	NAA25	12	112516491	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	192759	112516491	21335404	98	69278										
MED13L	0	genome.wustl.edu	37	chr12	116429416	116429416	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	attcatcacggaatcggagaGaatcagggtaacatagaggc	12	7	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	116429416	116429416	G	C	SNP	MED13L	ENST00000281928	human	ensembl	69_37n	-1	known	missense	c.3343	p.L1115V	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	26	0	0	13	7	35	-	-	-	C	116429416	G	C	116429416	3	2	822	1	0	0	0	0	1	0	0	0	9502	942	33	2	3349	2	MED13L	12	116429416	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	3912925	116429416	17422479	99	69279										
EP400	0	genome.wustl.edu	37	chr12	132504703	132504703	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ccacggcctctgctgctccaCagggcccgcttcgaggacgg	13	17	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	12	132504703	132504703	C	T	SNP	EP400	ENST00000333577	human	ensembl	69_37n	1	known	nonsense	c.4495	p.Q1499*	0.917	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	19	0	0	13	11	45.83	-	-	-	T	132504703	C	T	132504703	4	4	822	1	0	0	0	0	0	1	0	0	5186	479	17	4	4466	4	EP400	12	132504703	Nonsense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	16075287	132504703	1347192	100	69280										
RFXAP	0	genome.wustl.edu	37	chr13	37393936	37393936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gcacctacgaaggctgcagcGagaccacgagccaggtggcc	14	14	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	13	37393936	37393936	G	A	SNP	RFXAP	ENST00000255476	human	ensembl	69_37n	1	known	missense	c.442	p.E148K	1.000	NULL	NULL	-	no_errors	RFXAP	HGNC	ENSG00000133111	14	0	0	4	12	75	-	-	-	A	37393936	G	A	37393936	3	1	822	1	0	0	0	0	1	0	0	0	13353	1059	37	1	444	1	RFXAP	13	37393936	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		37393936	77775942	101	69281										
DGKH	0	genome.wustl.edu	37	chr13	42752318	42752318	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acgcatcttacaaaaatcctCaattctgatgaacatgcagt	5	10	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	13	42752318	42752318	C	T	SNP	DGKH	ENST00000337343	human	ensembl	69_37n	1	known	silent	c.1500	p.L500	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	40	0	0	15	7	31.82	-	-	-	T	42752318	C	T	42752318	2	4	822	1	0	0	0	0	0	0	0	1	4506	813	29	2		2	DGKH	13	42752318	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	5358382	42752318	72417560	102	69282										
CUL4A	0	genome.wustl.edu	37	chr13	113899465	113899465	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tccctcctttgctgtgtccaGagtgcggtgcagccttcacc	10	15	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	13	113899465	113899465	G	A	SNP	CUL4A	ENST00000375440	human	ensembl	69_37n	1	known	splice_site	c.1445-1	e14-1	1.000	-	-	-	no_errors	CUL4A	HGNC	ENSG00000139842	42	0	0	20	13	39.39	-	-	-	A	113899465	G	A	113899465	5	1	822	1	0	0	0	0	0	0	1	0	4088	956	33	2	1498	2	CUL4A	13	113899465	Splice_Site	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	71147147	113899465	1270413	103	69283										
OR4M1	0	genome.wustl.edu	37	chr14	20249178	20249178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agaaacattcaggctcaggtGagaataccaacagggccatg	11	9	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	14	20249178	20249178	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	missense	c.697	p.E233K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	75	0	0	28	17	37.78	-	-	-	A	20249178	G	A	20249178	3	1	822	1	0	0	0	0	1	0	0	0	11148	1291	45	2	699	2	OR4M1	14	20249178	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		20249178	87100362	104	69284										
ARID4A	0	genome.wustl.edu	37	chr14	58785449	58785449	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acacttgaccagcttccattAacaaatccagagcattttgg	6	11	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	14	58785449	58785449	A	T	SNP	ARID4A	ENST00000355431	human	ensembl	69_37n	1	known	missense	c.375	p.L125F	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219	48	0	0	23	23	50	-	-	-	T	58785449	A	T	58785449	3	4	822	1	0	0	0	0	1	0	0	0	921	359	13	5	397	5	ARID4A	14	58785449	Missense_Mutation	SNP	A	TCGA-E2-A2P6-01A-11D-A19Y-09	38536271	58785449	48564091	105	69285										
C15orf52	0	genome.wustl.edu	37	chr15	40632136	40632136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cggagcaaggcctggttcttCttgcgcagggcaactatcct	12	12	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	40632136	40632136	C	G	SNP	C15orf52	ENST00000559313	human	ensembl	69_37n	-1	known	missense	c.225	p.K75N	1.000	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549	30	0	0	13	7	35	-	-	-	G	40632136	C	G	40632136	3	3	822	1	0	0	0	0	1	0	0	0	1812	912	32	2	1419	2	C15orf52	15	40632136	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		40632136	61899256	106	69286										
UBR1	0	genome.wustl.edu	37	chr15	43363018	43363018	+	Missense_Mutation	SNP	C	C	T													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctggagttcaggaggcagttCtttttcctcttcccatatag							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	43363018	43363018	C	T	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.634	p.E212K	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	63	0	0	31	19	38	-	-	-	T	43363018	C	T	43363018	3	4	822	1	0	0	0	0	1	0	0	0	16998	922	32	2	4787	2	UBR1	15	43363018	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	2730882	43363018	59168374	107	69287	497	2								
UBR1	0	genome.wustl.edu	37	chr15	43363024	43363024	+	Missense_Mutation	SNP	C	C	T													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttcaggaggcagttctttttCctcttcccatatagtcattt							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	43363024	43363024	C	T	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.628	p.E210K	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	63	0	0	31	18	36.73	-	-	-	T	43363024	C	T	43363024	3	4	822	1	0	0	0	0	1	0	0	0	16998	864	30	2	4793	2	UBR1	15	43363024	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	6	43363024	59168368	108	69288	497	2								
SQRDL	0	genome.wustl.edu	37	chr15	45965918	45965918	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttcaaagagggcaatgccatCttcaccttcccaaatactcc	5	14	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	45965918	45965918	C	G	SNP	SQRDL	ENST00000260324	human	ensembl	69_37n	1	known	missense	c.573	p.I191M	0.999	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	SQRDL	HGNC	ENSG00000137767	51	0	0	24	9	27.27	-	-	-	G	45965918	C	G	45965918	3	3	822	1	0	0	0	0	1	0	0	0	15220	903	32	2	587	2	SQRDL	15	45965918	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	2602894	45965918	56565474	109	69289										
AP4E1	0	genome.wustl.edu	37	chr15	51289803	51289803	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttgtagtctgtctacaccttCattgtttgctaataacaaca	5	9	3	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	51289803	51289803	C	T	SNP	AP4E1	ENST00000261842	human	ensembl	69_37n	1	known	missense	c.2627	p.S876L	0.382	pfam_Coatomer_bsu_C,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	46	0	0	29	9	23.68	-	-	-	T	51289803	C	T	51289803	3	4	822	1	0	0	0	0	1	0	0	0	753	838	29	2	2697	2	AP4E1	15	51289803	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	5323885	51289803	51241589	110	69290										
ADAMTS17	0	genome.wustl.edu	37	chr15	100672300	100672300	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggcgccccacgggctccagtCtccgtccacatgctccggga	12	18	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	15	100672300	100672300	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.1633	p.D545N	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	39	0	0	19	15	44.12	-	-	-	T	100672300	C	T	100672300	3	4	822	1	0	0	0	0	1	0	0	0	262	913	32	2	1698	2	ADAMTS17	15	100672300	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	49382497	100672300	1859092	111	69291										
SRRM2	0	genome.wustl.edu	37	chr16	2815000	2815000	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagaaccgaaagctttgcctCagactcctaggccgaggagt	11	12	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	2815000	2815000	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	nonsense	c.4471	p.Q1491*	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	26	0	0	31	9	22.5	-	-	-	T	2815000	C	T	2815000	4	4	822	1	0	0	0	0	0	1	0	0	15260	827	29	2	4509	2	SRRM2	16	2815000	Nonsense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		2815000	87539753	112	69292										
SRRM2	0	genome.wustl.edu	37	chr16	2816501	2816501	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagaacatctccggtcacccGaaggagatctcgatctcgca	9	14	4	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	2816501	2816501	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	1	known	missense	c.5972	p.R1991Q	0.404	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	17	0	0	17	13	43.33	-	-	-	A	2816501	G	A	2816501	3	1	822	1	0	0	0	0	1	0	0	0	15260	1058	37	1	6010	1	SRRM2	16	2816501	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1501	2816501	87538252	113	69293										
DNAJA3	0	genome.wustl.edu	37	chr16	4504878	4504878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggctggggaggacgaggaggGattcctttccaaacttaaga	15	7	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	4504878	4504878	G	A	SNP	DNAJA3	ENST00000262375	human	ensembl	69_37n	1	known	missense	c.1406	p.G469E	1.000	NULL	pfam_DnaJ_N,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_N,pfscan_DnaJ_N,pfscan_HSP_DnaJ_Cys-rich_dom,prints_Hsp_DnaJ	-	no_errors	DNAJA3	HGNC	ENSG00000103423	26	0	0	17	12	41.38	-	-	-	A	4504878	G	A	4504878	3	1	822	1	0	0	0	0	1	0	0	0	4648	1174	41	2	1448	2	DNAJA3	16	4504878	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1688377	4504878	85849875	114	69294										
ITGAM	0	genome.wustl.edu	37	chr16	31336677	31336679	+	In_Frame_Del	DEL	CTT	CTT	-													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcctacaggacacaggtcacCttcttcttcccgcttgacct							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	31336677	31336679	CTT	-	DEL	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	in_frame_del	c.2460_2462	p.F823in_frame_del	0.333:0.341:0.383	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	47	0	0	24	31	56.36	-	-	-	-	31336679	CTT	-	31336677	7	5	822	1	0	1	0	1	0	0	0	0	7941	668	24	0	2538	0	ITGAM	16	31336677	In_Frame_Del	DEL	CTT	TCGA-E2-A2P6-01A-11D-A19Y-09	26831799	31336677	59018076	115	69295										
CDH1	0	genome.wustl.edu	37	chr16	68842676	68842677	+	Frame_Shift_Ins	INS	-	-	T													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acacaccccctgttggtgtcINStttattattgaaagagaaac							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	68842676	68842677	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.612_613	p.I205fs	0.552:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	16	0	0	2	10	83.33	-	-	-	T	68842677	-	T	68842676	7	5	822	1	0	1	1	0	0	0	0	0	3124	900	32	0	630	0	CDH1	16	68842676	Frame_Shift_Ins	INS	-	TCGA-E2-A2P6-01A-11D-A19Y-09	37505999	68842676	21512077	116	69296										
SPIRE2	0	genome.wustl.edu	37	chr16	89924757	89924757	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tctccccagggtttggctctCtgccctgcatcctcaacgcc	8	18	3	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	16	89924757	89924757	C	T	SNP	SPIRE2	ENST00000378247	human	ensembl	69_37n	1	known	silent	c.1114	p.L372	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE2	HGNC	ENSG00000204991	60	0	0	14	22	61.11	-	-	-	T	89924757	C	T	89924757	2	4	822	1	0	0	0	0	0	0	0	1	15163	912	32	2		2	SPIRE2	16	89924757	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	21082081	89924757	429996	117	69297										
KIAA0100	0	genome.wustl.edu	37	chr17	26962559	26962559	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cggcactgtagagtggccagGacatgctggtacaggtacat	14	9	0	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	17	26962559	26962559	G	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.2046	p.V682	0.064	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	63	0	0	23	11	32.35	-	-	-	C	26962559	G	C	26962559	2	2	822	1	0	0	0	0	0	0	0	1	8206	1161	41	2		2	KIAA0100	17	26962559	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		26962559	54232651	118	69298										
DDX5	0	genome.wustl.edu	37	chr17	62503388	62503388	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gttccctggatagggtctctCagcttcaccacctcttcgct	8	15	4	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	17	62503388	62503388	C	G	SNP	DDX5	ENST00000583699	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX5	HGNC	ENSG00000108654	52	0	0	18	19	51.35	-	-	-	G	62503388	C	G	62503388	1	3	822	0	1	0	0	0	0	0	0	0	4398	841	29	2		2	DDX5	17	62503388	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	35540829	62503388	18691822	119	69299										
KIAA0195	0	genome.wustl.edu	37	chr17	73489891	73489891	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cagctcaatggcaagtgcatCgagctggtacaggtgcccgg	14	11	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	17	73489891	73489891	C	T	SNP	KIAA0195	ENST00000314256	human	ensembl	69_37n	1	known	silent	c.2301	p.I767	0.044	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	30	0	0	9	9	50	-	-	-	T	73489891	C	T	73489891	2	4	822	1	0	0	0	0	0	0	0	1	8212	874	31	1		1	KIAA0195	17	73489891	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	10986503	73489891	7705319	120	69300										
RPTOR	0	genome.wustl.edu	37	chr17	78936301	78936301	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tctttgatccccggatgcctGagtcggtaaatgtgcttcag	11	10	2	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	17	78936301	78936301	G	A	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.3733	p.E1245K	0.999	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	53	0	0	26	13	33.33	-	-	-	A	78936301	G	A	78936301	3	1	822	1	0	0	0	0	1	0	0	0	13751	1291	45	2	3859	2	RPTOR	17	78936301	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	5446410	78936301	2258909	121	69301										
ASPSCR1	0	genome.wustl.edu	37	chr17	79973183	79973183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	atcccctcgtccgagcagtgGcgatccctcccgagtcaagg	11	16	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	17	79973183	79973183	G	A	SNP	ASPSCR1	ENST00000306729	human	ensembl	69_37n	1	known	missense	c.1586	p.G529D	0.001	NULL	pfam_TUG,pfam_UBX,pfscan_UBX	-	no_errors	ASPSCR1	HGNC	ENSG00000169696	38	0	0	17	9	34.62	-	-	-	A	79973183	G	A	79973183	3	1	822	1	0	0	0	0	1	0	0	0	1063	1218	42	4		4	ASPSCR1	17	79973183	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	1036882	79973183	1222027	122	69302										
LAMA3	0	genome.wustl.edu	37	chr18	21355771	21355771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cttagcctgcagctgtgaccCtgagcatgcggatggctgtg	14	11	0	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	18	21355771	21355771	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	1	known	missense	c.1289	p.P430L	0.985	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	48	0	0	9	20	68.97	-	-	-	T	21355771	C	T	21355771	3	4	822	1	0	0	0	0	1	0	0	0	8661	681	24	4	1327	4	LAMA3	18	21355771	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		21355771	56721477	123	69303										
MEX3C	0	genome.wustl.edu	37	chr18	48703857	48703857	+	Frame_Shift_Del	DEL	T	T	-													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	catggcaacatcttctttccTtccagtgacaacaaaaatgg							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	18	48703857	48703857	T	-	DEL	MEX3C	ENST00000406189	human	ensembl	69_37n	-1	known	frame_shift_del	c.844	p.R282fs	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	48	0	0	15	2	11.76	-	-	-	-	48703857	T	-	48703857	7	5	822	1	0	1	0	1	0	0	0	0	9582	1608	56	0	1139	0	MEX3C	18	48703857	Frame_Shift_Del	DEL	T	TCGA-E2-A2P6-01A-11D-A19Y-09	27348086	48703857	29373391	124	69304										
APC2	0	genome.wustl.edu	37	chr19	1468432	1468432	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agctgccacgcgggaggcctCgtccgagtccgactccatcc	12	17	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	1468432	1468432	C	A	SNP	APC2	ENST00000233607	human	ensembl	69_37n	1	known	nonsense	c.5132	p.S1711*	0.998	NULL	pfam_APC_basic_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	10	0	0	2	6	75	-	-	-	A	1468432	C	A	1468432	4	1	822	1	0	0	0	0	0	1	0	0	765	893	31	3	5186	3	APC2	19	1468432	Nonsense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		1468432	57660551	125	69305										
CHERP	0	genome.wustl.edu	37	chr19	16631645	16631645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ctgcgcttttacctgttcctCttctcctggcctttcctccg	6	17	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	16631645	16631645	C	G	SNP	CHERP	ENST00000546361	human	ensembl	69_37n	-1	known	missense	c.2193	p.K731N	1.000	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	51	0	0	31	18	36.73	-	-	-	G	16631645	C	G	16631645	3	3	822	1	0	0	0	0	1	0	0	0	3365	912	32	2	577	2	CHERP	19	16631645	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	15163213	16631645	42497338	126	69306										
ZNF208	0	genome.wustl.edu	37	chr19	22155532	22155532	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttctctacagtatgaattttCttatgataactaagggttga	7	5	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	22155532	22155532	C	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2304	p.K768N	0.071	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	23	0	0	5	8	61.54	-	-	-	G	22155532	C	G	22155532	3	3	822	1	0	0	0	0	1	0	0	0	17862	912	32	2	1542	2	ZNF208	19	22155532	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	5523887	22155532	36973451	127	69307										
TSHZ3	0	genome.wustl.edu	37	chr19	31767861	31767861	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acgttggccagccagtggctGatggtggtcatggacagccc	15	11	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	31767861	31767861	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.2838	p.I946	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	44	0	0	19	16	45.71	-	-	-	A	31767861	G	A	31767861	2	1	822	1	0	0	0	0	0	0	0	1	16721	1280	45	2		2	TSHZ3	19	31767861	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	9612329	31767861	27361122	128	69308										
TBCB	0	genome.wustl.edu	37	chr19	36611614	36611614	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gcccctcccctcacacaggtCattgaccacagtggcgcccg	9	19	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	36611614	36611614	C	T	SNP	TBCB	ENST00000221855	human	ensembl	69_37n	1	known	silent	c.261	p.V87	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCB	HGNC	ENSG00000105254	23	0	0	11	7	38.89	-	-	-	T	36611614	C	T	36611614	2	4	822	1	0	0	0	0	0	0	0	1	15725	813	29	2		2	TBCB	19	36611614	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	4843753	36611614	22517369	129	69309										
SLC6A16	0	genome.wustl.edu	37	chr19	49793936	49793936	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	catggtcacaaagatgattaGcagcacaactggacacagat	9	9	1	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49793936	49793936	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	silent	c.1867	p.L623	0.960	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	17	0	0	17	10	37.04	-	-	-	A	49793936	G	A	49793936	2	1	822	1	0	0	0	0	0	0	0	1	14768	962	34	4		4	SLC6A16	19	49793936	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	13182322	49793936	9335047	130	69310										
SLC6A16	0	genome.wustl.edu	37	chr19	49796595	49796595	+	Missense_Mutation	SNP	G	G	C													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gaagtagctgcctgaaggtcGagtgaagaagaggccgcaca							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49796595	49796595	G	C	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.1663	p.R555G	0.007	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	37	0	0	11	4	26.67	-	-	-	C	49796595	G	C	49796595	3	2	822	1	0	0	0	0	1	0	0	0	14768	1066	37	3	559	3	SLC6A16	19	49796595	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	2659	49796595	9332388	131	69311	498	2								
SLC6A16	0	genome.wustl.edu	37	chr19	49796601	49796601	+	Missense_Mutation	SNP	A	A	G													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gctgcctgaaggtcgagtgaAgaagaggccgcacacgaaca							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49796601	49796601	A	G	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.1657	p.F553L	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	38	0	0	11	4	26.67	-	-	-	G	49796601	A	G	49796601	3	3	822	1	0	0	0	0	1	0	0	0	14768	72	3	5	565	5	SLC6A16	19	49796601	Missense_Mutation	SNP	A	TCGA-E2-A2P6-01A-11D-A19Y-09	6	49796601	9332382	132	69312	498	2								
SLC6A16	0	genome.wustl.edu	37	chr19	49812289	49812289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	gcatgtaggaggctaaggagGcaacggagccaaggcctatg	16	8	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49812289	49812289	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.1073	p.A358V	0.001	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	24	0	0	11	4	25	-	-	-	A	49812289	G	A	49812289	3	1	822	1	0	0	0	0	1	0	0	0	14768	1203	42	4	1161	4	SLC6A16	19	49812289	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	15688	49812289	9316694	133	69313			1	114		3	3	1036	G		1.268863e-05
SLC6A16	0	genome.wustl.edu	37	chr19	49812932	49812932	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ccagtggacttgagcccattGatcatgaaagcaccaacaag	9	11	1	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49812932	49812932	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	silent	c.852	p.I284	0.597	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	36	0	0	17	5	22.73	-	-	-	A	49812932	G	A	49812932	2	1	822	1	0	0	0	0	0	0	0	1	14768	1280	45	2		2	SLC6A16	19	49812932	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	643	49812932	9316051	134	69314			1	114		3	3	1036	G		1.268863e-05
SLC6A16	0	genome.wustl.edu	37	chr19	49813324	49813324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	actagagttcatcgttaaggGacatttctcccatggaacgg	10	9	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	49813324	49813324	G	T	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.673	p.P225T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	45	0	0	27	12	30.77	-	-	-	T	49813324	G	T	49813324	3	4	822	1	0	0	0	0	1	0	0	0	14768	1174	41	2	1573	2	SLC6A16	19	49813324	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	392	49813324	9315659	135	69315			1	114		3	3	1036	G		1.268863e-05
ZNF160	0	genome.wustl.edu	37	chr19	53571914	53571914	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cctaaaaaccttgccgcattCatgacatttgtaaggtttct	6	10	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	53571914	53571914	C	T	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.1873	p.E625K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	38	0	0	20	7	25.93	-	-	-	T	53571914	C	T	53571914	3	4	822	1	0	0	0	0	1	0	0	0	17835	835	29	2	587	2	ZNF160	19	53571914	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	3758590	53571914	5557069	136	69316										
ZNF471	0	genome.wustl.edu	37	chr19	57036209	57036209	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acatcacagaacacatactgGagagaaactctttgaatgta	7	8	2	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	19	57036209	57036209	G	C	SNP	ZNF471	ENST00000308031	human	ensembl	69_37n	1	known	missense	c.773	p.G258A	0.735	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263	17	0	0	10	6	37.5	-	-	-	C	57036209	G	C	57036209	3	2	822	1	0	0	0	0	1	0	0	0	18026	1174	41	2	787	2	ZNF471	19	57036209	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	3464295	57036209	2092774	137	69317										
SRXN1	0	genome.wustl.edu	37	chr20	629441	629441	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aagcttggcggggatggtctCtcgctgcagttgctggtagg	17	8	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	20	629441	629441	C	T	SNP	SRXN1	ENST00000381962	human	ensembl	69_37n	-1	known	missense	c.331	p.E111K	1.000	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	-	no_errors	SRXN1	HGNC	ENSG00000172070	65	0	0	37	22	37.29	-	-	-	T	629441	C	T	629441	3	4	822	1	0	0	0	0	1	0	0	0	15264	922	32	2	86	2	SRXN1	20	629441	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		629441	62396079	138	69318										
BTBD3	0	genome.wustl.edu	37	chr20	11903405	11903405	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aatttcctggagaccagcctGagtgccaagaatgcctgtgt	11	10	0	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	20	11903405	11903405	G	A	SNP	BTBD3	ENST00000378226	human	ensembl	69_37n	1	known	silent	c.660	p.L220	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640	47	0	0	20	17	45.95	-	-	-	A	11903405	G	A	11903405	2	1	822	1	0	0	0	0	0	0	0	1	1553	1277	45	2		2	BTBD3	20	11903405	Silent	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	11273964	11903405	51122115	139	69319										
RALGAPA2	0	genome.wustl.edu	37	chr20	20599982	20599982	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cctcctctgtcacacaccctCtgctcattgcacttgtgaag	6	16	4	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	20	20599982	20599982	C	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.1478	p.R493K	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	51	0	0	16	11	40.74	-	-	-	T	20599982	C	T	20599982	3	4	822	1	0	0	0	0	1	0	0	0	13097	913	32	2	4255	2	RALGAPA2	20	20599982	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	8696577	20599982	42425538	140	69320										
PRIC285	0	genome.wustl.edu	37	chr20	62202785	62202785	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cccgctccaagctcctgggaAcctctggctctgcctacggt	10	17	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	20	62202785	62202785	A	G	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.741	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	28	0	0	26	16	38.1	-	-	-	G	62202785	A	G	62202785	1	3	822	0	1	0	0	0	0	0	0	0	12566	58	2	5		5	PRIC285	20	62202785	RNA	SNP	A	TCGA-E2-A2P6-01A-11D-A19Y-09	41602803	62202785	822735	141	69321										
SNAP29	0	genome.wustl.edu	37	chr22	21237758	21237758	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggtgtttccttctaaacttaGaccctgtccccagaggggct	10	12	1	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	22	21237758	21237758	G	A	SNP	SNAP29	ENST00000215730	human	ensembl	69_37n	1	known	splice_site	c.521-1	e4-1	0.821	-	-	-	no_errors	SNAP29	HGNC	ENSG00000099940	57	0	0	40	6	13.04	-	-	-	A	21237758	G	A	21237758	5	1	822	1	0	0	0	0	0	0	1	0	14920	956	33	2	534	2	SNAP29	22	21237758	Splice_Site	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09		21237758	30066808	142	69322										
RGL4	0	genome.wustl.edu	37	chr22	24038606	24038606	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggtttgcatcactctttacaGaagaggaaacagtctcaggg	11	8	3	2			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	22	24038606	24038606	G	A	SNP	RGL4	ENST00000441897	human	ensembl	69_37n	1	known	missense	c.1178	p.R393K	0.002	smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RGL4	HGNC	ENSG00000159496	40	0	0	21	18	46.15	-	-	-	A	24038606	G	A	24038606	3	1	822	1	0	0	0	0	1	0	0	0	13362	957	33	2		2	RGL4	22	24038606	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	2800848	24038606	27265960	143	69323										
ASCC2	0	genome.wustl.edu	37	chr22	30198146	30198146	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	cacttgggagatgagagagtCcagttccaccccacacatgg	11	12	0	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	22	30198146	30198146	C	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	missense	c.1405	p.D469Y	1.000	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	49	0	0	10	16	61.54	-	-	-	A	30198146	C	A	30198146	3	1	822	1	0	0	0	0	1	0	0	0	1036	855	30	2	896	2	ASCC2	22	30198146	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	6159540	30198146	21106420	144	69324										
EIF3D	0	genome.wustl.edu	37	chr22	36912354	36912354	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	acagtcatgctctttctcagCaaggaactaagcagaggaaa	9	9	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	22	36912354	36912354	C	A	SNP	EIF3D	ENST00000462794	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EIF3D	HGNC	ENSG00000100353	14	0	0	9	10	52.63	-	-	-	A	36912354	C	A	36912354	1	1	822	0	1	0	0	0	0	0	0	0	5051	725	25	4		4	EIF3D	22	36912354	RNA	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	6714208	36912354	14392212	145	69325										
BIK	0	genome.wustl.edu	37	chr22	43524602	43524602	+	Frame_Shift_Del	DEL	T	T	-													0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ttaaggagaacataatgaggTtctggagatccccgaacccc							TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	22	43524602	43524602	T	-	DEL	BIK	ENST00000216115	human	ensembl	69_37n	1	known	frame_shift_del	c.361	p.F121fs	0.000	pfam_Bcl2-int_killer	pfam_Bcl2-int_killer	-	no_errors	BIK	HGNC	ENSG00000100290	41	0	0	15	16	51.61	-	-	-	-	43524602	T	-	43524602	7	5	822	1	0	1	0	1	0	0	0	0	1436	1725	60	0	371	0	BIK	22	43524602	Frame_Shift_Del	DEL	T	TCGA-E2-A2P6-01A-11D-A19Y-09	6612248	43524602	7779964	146	69326										
TAB3	0	genome.wustl.edu	37	chrX	30873431	30873431	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	ggttcttgaactaaacatatCagctgtttacctgctgcatg	8	9	2	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	30873431	30873431	C	T	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	silent	c.351	p.L117	0.996	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	45	0	0	32	10	23.81	-	-	-	T	30873431	C	T	30873431	2	4	822	1	0	0	0	0	0	0	0	1	15589	813	29	2		2	TAB3	23	30873431	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09		30873431	124397129	147	69327										
MED14	0	genome.wustl.edu	37	chrX	40514245	40514245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tcccaggaggtgcaatcggcGgcgcgctgggagggatcgtc	18	11	0	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	40514245	40514245	G	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	missense	c.4040	p.P1347L	0.995	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	64	0	0	32	27	45.76	-	-	-	A	40514245	G	A	40514245	3	1	822	1	0	0	0	0	1	0	0	0	9503	1116	39	1	336	1	MED14	23	40514245	Missense_Mutation	SNP	G	TCGA-E2-A2P6-01A-11D-A19Y-09	9640814	40514245	114756315	148	69328										
GPR34	0	genome.wustl.edu	37	chrX	41555198	41555198	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	attgcagacctcctactcatCttctgcctccctttccgaat	4	16	3	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	41555198	41555198	C	G	SNP	GPR34	ENST00000378138	human	ensembl	69_37n	1	known	missense	c.312	p.I104M	0.994	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR34	HGNC	ENSG00000171659	32	0	0	20	17	45.95	-	-	-	G	41555198	C	G	41555198	3	3	822	1	0	0	0	0	1	0	0	0	6739	903	32	2	314	2	GPR34	23	41555198	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	1040953	41555198	113715362	149	69329										
GPR34	0	genome.wustl.edu	37	chrX	41555705	41555705	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	aactcctttattgtacttatCatttttactatatgttttgt	3	6	1	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	41555705	41555705	C	T	SNP	GPR34	ENST00000378138	human	ensembl	69_37n	1	known	silent	c.819	p.I273	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR34	HGNC	ENSG00000171659	38	0	0	18	7	28	-	-	-	T	41555705	C	T	41555705	2	4	822	1	0	0	0	0	0	0	0	1	6739	816	29	2		2	GPR34	23	41555705	Silent	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	507	41555705	113714855	150	69330										
ZNF630	0	genome.wustl.edu	37	chrX	47919407	47919407	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	agtcaatgtttcacgactgaTgactgtgacctgcctcaaaa	8	10	3	3			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	47919407	47919407	T	A	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	missense	c.424	p.I142F	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	51	0	0	30	21	41.18	-	-	-	A	47919407	T	A	47919407	3	1	822	1	0	0	0	0	1	0	0	0	18150	1464	51	5	1553	5	ZNF630	23	47919407	Missense_Mutation	SNP	T	TCGA-E2-A2P6-01A-11D-A19Y-09	6363702	47919407	107351153	151	69331										
COL4A6	0	genome.wustl.edu	37	chrX	107403829	107403829	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	accaacgtgtagcccactctCatgctctggccaggcattcc	8	16	2	0			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	107403829	107403829	C	T	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.4392	p.M1464I	0.019	superfamily_C-type_lectin_fold	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	30	0	0	14	7	33.33	-	-	-	T	107403829	C	T	107403829	3	4	822	1	0	0	0	0	1	0	0	0	3725	826	29	2	695	2	COL4A6	23	107403829	Missense_Mutation	SNP	C	TCGA-E2-A2P6-01A-11D-A19Y-09	59484422	107403829	47866731	152	69332										
F8	0	genome.wustl.edu	37	chrX	154158487	154158487	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.549668874172185	83	2.43332394813595e-34	4.40258565652266	5.77413127413127	4.01467376467376	1.03693305068304e-07	1.35296803685147e-05	64	tatccaagttagtaagaaatAggtttctgctgcttggaaaa	9	5	1	1			TCGA-E2-A2P6-01A-11D-A19Y-09	TCGA-E2-A2P6-10B-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b5d4557a-10ec-430e-a01a-c8b79c6fe3ea	bf78c46f-db59-42d8-85a1-56bb2498126e	X	154158487	154158487	A	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.3578	p.L1193R	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	51	0	0	16	14	46.67	-	-	-	C	154158487	A	C	154158487	3	2	822	1	0	0	0	0	1	0	0	0	5387	420	15	5	3557	5	F8	23	154158487	Missense_Mutation	SNP	A	TCGA-E2-A2P6-01A-11D-A19Y-09	46754658	154158487	1112073	153	69333										
FBXO42	0	genome.wustl.edu	37	chr1	16641842	16641842	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tcctcatcttgatccattgtCccttccagcacagtttcttc	4	15	3	1			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	1	16641842	16641842	C	T	SNP	FBXO42	ENST00000375592	human	ensembl	69_37n	-1	known	silent	c.72	p.G24	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO42	HGNC	ENSG00000037637	25	0	0	31	4	11.43	-	-	-	T	16641842	C	T	16641842	2	4	823	1	0	0	0	0	0	0	0	1	5797	842	30	2		2	FBXO42	1	16641842	Silent	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09		16641842	232608779	1	69334										
TBL1XR1	0	genome.wustl.edu	37	chr3	176769296	176769297	+	Frame_Shift_Del	DEL	TA	TA	-													0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tcttgtctgagctcacttgcTatagtatgtgctccattctc							TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	3	176769296	176769297	TA	-	DEL	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	frame_shift_del	c.423_422	p.I141fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	13	0	0	18	9	33.33	-	-	-	-	176769297	TA	-	176769296	7	5	823	1	0	1	0	1	0	0	0	0	15735	1512	53	0	1169	0	TBL1XR1	3	176769296	Frame_Shift_Del	DEL	TA	TCGA-E2-A3DX-01A-21D-A20S-09		176769296	21253134	2	69335										
WDR19	0	genome.wustl.edu	37	chr4	39245931	39245931	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	taagaatgggagacatacgtCgaggggttaaccaagccctc	12	9	0	2			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	4	39245931	39245931	C	A	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	silent	c.2485	p.R829	0.993	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	22	0	0	31	5	13.89	-	-	-	A	39245931	C	A	39245931	2	1	823	1	0	0	0	0	0	0	0	1	17376	876	31	3		3	WDR19	4	39245931	Silent	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09		39245931	151908345	3	69336										
INPP4B	0	genome.wustl.edu	37	chr4	143181718	143181718	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	cattcacataccagggcacaCtaggaaaaaatgtaaaaaaa	6	8	1	0			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	4	143181718	143181718	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	splice_site	c.616-1	e8-1	1.000	-	-	-	no_errors	INPP4B	HGNC	ENSG00000109452	36	0	0	35	4	10.26	-	-	-	T	143181718	C	T	143181718	5	4	823	1	0	0	0	0	0	0	1	0	7807	579	20	4	2223	4	INPP4B	4	143181718	Splice_Site	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09	103935787	143181718	47972558	4	69337										
HMGCR	0	genome.wustl.edu	37	chr5	74650339	74650339	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tttctttagaaaggtgcaaaAttccttagtgatgctgagat	9	5	1	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	5	74650339	74650339	A	T	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	missense	c.1380	p.K460N	0.993	superfamily_HMG_CoA_Rdtase_sub-bd,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	26	0	0	35	4	10.26	-	-	-	T	74650339	A	T	74650339	3	4	823	1	0	0	0	0	1	0	0	0	7282	98	4	5	1422	5	HMGCR	5	74650339	Missense_Mutation	SNP	A	TCGA-E2-A3DX-01A-21D-A20S-09		74650339	106264921	5	69338										
LARS	0	genome.wustl.edu	37	chr5	145522520	145522520	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	cttgccagagacgcgaagatCaacaggataccagaattcaa	9	10	2	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	5	145522520	145522520	C	T	SNP	LARS	ENST00000394434	human	ensembl	69_37n	-1	known	missense	c.2005	p.D669N	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	21	0	0	22	4	15.38	-	-	-	T	145522520	C	T	145522520	3	4	823	1	0	0	0	0	1	0	0	0	8688	826	29	2	1577	2	LARS	5	145522520	Missense_Mutation	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09	70872181	145522520	35392740	6	69339										
PIK3CG	0	genome.wustl.edu	37	chr7	106523363	106523364	+	RNA	DEL	AA	AA	-													0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tggaaaatagctctctggtcAaaaaaaaaaaaaaaaaaaac							TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	7	106523363	106523364	AA	-	DEL	PIK3CG	ENST00000466738	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	PIK3CG	HGNC	ENSG00000105851	10	0	0	9	2	13.33	-	-	-	-	106523364	AA	-	106523363	6	5	823	0	1	1	0	1	0	0	0	0	11990	145	5	0		0	PIK3CG	7	106523363	RNA	DEL	AA	TCGA-E2-A3DX-01A-21D-A20S-09		106523363	52615300	7	69340										
GGH	0	genome.wustl.edu	37	chr8	63927746	63927746	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	attatctaatgttatataaaTagtcacatacagaatgaaga	5	4	2	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	8	63927746	63927746	T	C	SNP	GGH	ENST00000518466	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GGH	HGNC	ENSG00000137563	10	0	0	11	11	50	-	-	-	C	63927746	T	C	63927746	1	2	823	0	1	0	0	0	0	0	0	0	6409	1421	49	5		5	GGH	8	63927746	RNA	SNP	T	TCGA-E2-A3DX-01A-21D-A20S-09		63927746	82436276	8	69341										
HSD17B3	0	genome.wustl.edu	37	chr9	99012066	99012066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	gtgatgttacaatggatgagGctctgtaataaataatcaca	9	5	2	2			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	9	99012066	99012066	G	T	SNP	HSD17B3	ENST00000375263	human	ensembl	69_37n	-1	known	missense	c.456	p.S152R	0.066	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B3	HGNC	ENSG00000130948	32	0	0	25	4	13.79	-	-	-	T	99012066	G	T	99012066	3	4	823	1	0	0	0	0	1	0	0	0	7436	1194	42	4	500	4	HSD17B3	9	99012066	Missense_Mutation	SNP	G	TCGA-E2-A3DX-01A-21D-A20S-09		99012066	42201365	9	69342										
ITIH2	0	genome.wustl.edu	37	chr10	7745330	7745330	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	ctgttcctttgaacttggttCagtaggaagaagtgatatcc	10	7	1	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	10	7745330	7745330	C	T	SNP	ITIH2	ENST00000476165	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ITIH2	HGNC	ENSG00000151655	30	0	0	27	4	12.9	-	-	-	T	7745330	C	T	7745330	1	4	823	0	1	0	0	0	0	0	0	0	7958	841	29	2		2	ITIH2	10	7745330	RNA	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09		7745330	127789417	10	69343										
CNTN1	0	genome.wustl.edu	37	chr12	41330620	41330620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	gaacacatcaatgacacagaGgtggacataggcagtgatct	11	8	2	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	12	41330620	41330620	G	T	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.1023	p.E341D	0.997	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	29	0	0	21	3	12.5	-	-	-	T	41330620	G	T	41330620	3	4	823	1	0	0	0	0	1	0	0	0	3670	991	35	4	1057	4	CNTN1	12	41330620	Missense_Mutation	SNP	G	TCGA-E2-A3DX-01A-21D-A20S-09		41330620	92521275	11	69344										
RTTN	0	genome.wustl.edu	37	chr18	67741218	67741218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	gagccctccaaaacttgaatGagtcatctaaacctgcaaca	6	12	2	2			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	18	67741218	67741218	G	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.4577	p.S1526L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	37	0	0	17	4	19.05	-	-	-	A	67741218	G	A	67741218	3	1	823	1	0	0	0	0	1	0	0	0	13823	1294	45	2	2167	2	RTTN	18	67741218	Missense_Mutation	SNP	G	TCGA-E2-A3DX-01A-21D-A20S-09		67741218	10336030	12	69345										
MUC16	0	genome.wustl.edu	37	chr19	8994489	8994489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	atgttctcctcataccgcagGttagtgatggtgaagttgag	12	7	2	3			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	19	8994489	8994489	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.41403	p.N13801	0.429	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	48	0	0	53	14	20.9	-	-	-	A	8994489	G	A	8994489	2	1	823	1	0	0	0	0	0	0	0	1	10045	1252	44	4		4	MUC16	19	8994489	Silent	SNP	G	TCGA-E2-A3DX-01A-21D-A20S-09		8994489	50134494	13	69346										
ZNF101	0	genome.wustl.edu	37	chr19	19790603	19790603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tcatttccgcaggttaccttCggacacatgaaatcagatct	7	11	3	2			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	19	19790603	19790603	C	T	SNP	ZNF101	ENST00000318110	human	ensembl	69_37n	1	known	missense	c.805	p.R269W	0.151	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896	22	0	0	20	6	23.08	-	-	-	T	19790603	C	T	19790603	3	4	823	1	0	0	0	0	1	0	0	0	17810	875	31	1	819	1	ZNF101	19	19790603	Missense_Mutation	SNP	C	TCGA-E2-A3DX-01A-21D-A20S-09	10796114	19790603	39338380	14	69347										
TPTE	0	genome.wustl.edu	37	chr21	11026767	11026767	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	3	0.479717513739179	1.94571428571429	NA	1.94571428571429	0.1	0.5224358974359	0	tccacttttcagctttgaccTgcctcggccacctcgccccg	7	19	1	1			TCGA-E2-A3DX-01A-21D-A20S-09	TCGA-E2-A3DX-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7a89a261-0177-4378-b89a-b1ead9e093bf	1ab484a1-6e7d-485f-938a-6d1d2f74cf40	21	11026767	11026767	T	C	SNP	TPTE	ENST00000415664	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157	45	0	0	53	8	13.11	-	-	-	C	11026767	T	C	11026767	1	2	823	0	1	0	0	0	0	0	0	0	16526	1595	55	5		5	TPTE	21	11026767	RNA	SNP	T	TCGA-E2-A3DX-01A-21D-A20S-09		11026767	37103128	15	69348										
AIM1L	0	genome.wustl.edu	37	chr1	26669642	26669642	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tggcagccagactctgagaaGaagatcacctgagaaggcac	12	10	2	5			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	1	26669642	26669642	G	T	SNP	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	missense	c.348	p.F116L	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	54	0	0	17	9	34.62	-	-	-	T	26669642	G	T	26669642	3	4	824	1	0	0	0	0	1	0	0	0	431	957	33	2		2	AIM1L	1	26669642	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09		26669642	222580979	1	69349										
VSIG8	0	genome.wustl.edu	37	chr1	159826348	159826348	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tccaccacacaaacactgtaGcccacgttgttggccactgt	7	15	0	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	1	159826348	159826348	G	C	SNP	VSIG8	ENST00000368100	human	ensembl	69_37n	-1	known	silent	c.738	p.G246	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG8	HGNC	ENSG00000243284	116	0	0	55	9	14.06	-	-	-	C	159826348	G	C	159826348	2	2	824	1	0	0	0	0	0	0	0	1	17323	958	34	4		4	VSIG8	1	159826348	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	133156706	159826348	89424273	2	69350										
DYRK3	0	genome.wustl.edu	37	chr1	206821748	206821748	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tggctgcatccttgcagaacTtttaacaggacagcctctct	8	12	1	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	1	206821748	206821748	T	G	SNP	DYRK3	ENST00000367109	human	ensembl	69_37n	1	known	missense	c.1205	p.L402R	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479	44	0	0	22	19	46.34	-	-	-	G	206821748	T	G	206821748	3	3	824	1	0	0	0	0	1	0	0	0	4892	1609	56	5	1236	5	DYRK3	1	206821748	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09	46995400	206821748	42428873	3	69351										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	43	0	0	19	3	13.64	-	-	-	C	198266834	T	C	198266834	3	2	824	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09		198266834	44932539	4	69352										
ANKZF1	0	genome.wustl.edu	37	chr2	220099673	220099673	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ggaggagaaaaaggaataagAaggagaaaagccgagaccag	15	4	0	4			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	2	220099673	220099673	A	G	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	1	known	missense	c.1330	p.K444E	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	83	0	0	32	11	25.58	-	-	-	G	220099673	A	G	220099673	3	3	824	1	0	0	0	0	1	0	0	0	692	247	9	5	1364	5	ANKZF1	2	220099673	Missense_Mutation	SNP	A	TCGA-E2-A56Z-01A-12D-A29N-09	21832839	220099673	23099700	5	69353										
CHRNG	0	genome.wustl.edu	37	chr2	233404776	233404776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	acgaccccaacctgcggcccGcggaacgagactcggatgtg	13	15	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	2	233404776	233404776	G	A	SNP	CHRNG	ENST00000389494	human	ensembl	69_37n	1	known	missense	c.130	p.A44T	0.854	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811	51	0	0	21	5	19.23	-	-	-	A	233404776	G	A	233404776	3	1	824	1	0	0	0	0	1	0	0	0	3425	1087	38	1	136	1	CHRNG	2	233404776	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	13305103	233404776	9794597	6	69354										
PCBP4	0	genome.wustl.edu	37	chr3	51993955	51993956	+	Frame_Shift_Del	DEL	CA	CA	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gcgcacacacaggatgatggCatcaggcaccccagataccg							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	3	51993955	51993956	CA	-	DEL	PCBP4	ENST00000395014	human	ensembl	69_37n	-1	known	frame_shift_del	c.535_534	p.A179fs	0.952:0.452	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097	57	0	0	17	2	10.53	-	-	-	-	51993956	CA	-	51993955	7	5	824	1	0	1	0	1	0	0	0	0	11576	710	25	0	767	0	PCBP4	3	51993955	Frame_Shift_Del	DEL	CA	TCGA-E2-A56Z-01A-12D-A29N-09		51993955	146028475	7	69355										
SEMA3G	0	genome.wustl.edu	37	chr3	52473711	52473711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	cttaccttaaacacctggagCtcctccagaaccacttcctc	4	17	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	3	52473711	52473711	C	G	SNP	SEMA3G	ENST00000231721	human	ensembl	69_37n	-1	known	missense	c.1452	p.E484D	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3G	HGNC	ENSG00000010319	47	0	0	9	6	40	-	-	-	G	52473711	C	G	52473711	3	3	824	1	0	0	0	0	1	0	0	0	14118	796	28	4	916	4	SEMA3G	3	52473711	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	479756	52473711	145548719	8	69356										
GABRR3	0	genome.wustl.edu	37	chr3	97705686	97705686	+	Frame_Shift_Del	DEL	G	G	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	atccgagatgaatcggtgctGgggctgcatatcgattttct							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	3	97705686	97705686	G	-	DEL	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	frame_shift_del	c.1245	p.S416fs	0.985	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	67	0	0	20	27	56.25	-	-	-	-	97705686	G	-	97705686	7	5	824	1	0	1	0	1	0	0	0	0	6227	1335	47	0	161	0	GABRR3	3	97705686	Frame_Shift_Del	DEL	G	TCGA-E2-A56Z-01A-12D-A29N-09	45231975	97705686	100316744	9	69357										
POLQ	0	genome.wustl.edu	37	chr3	121202430	121202430	+	Splice_Site	DEL	C	C	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	aaccaaactggcactaatttCtttaaaaaaaaaaaaaaaaa							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	3	121202430	121202430	C	-	DEL	POLQ	ENST00000264233	human	ensembl	69_37n	-1	known	splice_site_del	c.5774-1	e18-1	1.000	-	-	-	no_errors	POLQ	HGNC	ENSG00000051341	10	0	0	6	3	33.33	-	-	-	-	121202430	C	-	121202430	8	5	824	1	0	1	0	1	0	0	1	0	12282	927	32	0	2051	0	POLQ	3	121202430	Splice_Site	DEL	C	TCGA-E2-A56Z-01A-12D-A29N-09	23496744	121202430	76820000	10	69358										
KLF15	0	genome.wustl.edu	37	chr3	126071710	126071710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gcctatcacccagatacccaActgggcattttggcgacgag	10	13	1	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	3	126071710	126071710	A	G	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.56	p.V19A	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	42	0	0	8	6	42.86	-	-	-	G	126071710	A	G	126071710	3	3	824	1	0	0	0	0	1	0	0	0	8396	43	2	5	1202	5	KLF15	3	126071710	Missense_Mutation	SNP	A	TCGA-E2-A56Z-01A-12D-A29N-09	4869280	126071710	71950720	11	69359										
PDZD2	0	genome.wustl.edu	37	chr5	32074112	32074112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gaaggtaggctgctacgatgCcaacgatgccagtgatgagg	15	8	0	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	5	32074112	32074112	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.2900	p.A967V	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	41	0	0	14	4	22.22	-	-	-	T	32074112	C	T	32074112	3	4	824	1	0	0	0	0	1	0	0	0	11774	739	26	4	2966	4	PDZD2	5	32074112	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		32074112	148841148	12	69360										
PCDHA2	0	genome.wustl.edu	37	chr5	140176412	140176412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	actggcagcgctcgcatcccGttccgcgtggggctatacac	12	15	0	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	5	140176412	140176412	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	silent	c.1863	p.P621	0.404	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	184	0	0	115	14	10.85	-	-	-	A	140176412	G	A	140176412	2	1	824	1	0	0	0	0	0	0	0	1	11597	1132	40	1		1	PCDHA2	5	140176412	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	108102300	140176412	40738848	13	69361										
PCDHB5	0	genome.wustl.edu	37	chr5	140516842	140516842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gtaccagctgctcaaggccaCggagcccgggctgttcagca	13	14	2	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	5	140516842	140516842	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	69_37n	1	known	missense	c.1826	p.T609M	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	218	0	0	99	43	30.28	-	-	-	T	140516842	C	T	140516842	3	4	824	1	0	0	0	0	1	0	0	0	11618	536	19	1	1828	1	PCDHB5	5	140516842	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	340430	140516842	40398418	14	69362										
PRELID2	0	genome.wustl.edu	37	chr5	145214806	145214806	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	acctggtgcacatccaccgaGacccccatccccgcgcgccg	9	21	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	5	145214806	145214806	G	A	SNP	PRELID2	ENST00000334744	human	ensembl	69_37n	-1	known	silent	c.9	p.V3	1.000	pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	-	no_errors	PRELID2	HGNC	ENSG00000186314	57	0	0	28	6	17.65	-	-	-	A	145214806	G	A	145214806	2	1	824	1	0	0	0	0	0	0	0	1	12553	929	33	2		2	PRELID2	5	145214806	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	4697964	145214806	35700454	15	69363										
ODZ2	0	genome.wustl.edu	37	chr5	167589717	167589717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ggagagggcccggatgcaacGttgccatggaaacttcctgt	14	10	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	5	167589717	167589717	G	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.2524	p.V842I	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	48	0	0	37	10	21.28	-	-	-	A	167589717	G	A	167589717	3	1	824	1	0	0	0	0	1	0	0	0	10908	1145	40	1	2547	1	ODZ2	5	167589717	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	22374911	167589717	13325543	16	69364										
FILIP1	0	genome.wustl.edu	37	chr6	76063403	76063403	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ctctagcatgcgccggtaggTttctttctgtttttcctcaa	8	11	4	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	6	76063403	76063403	T	A	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.481	p.T161S	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	69	0	0	15	26	63.41	-	-	-	A	76063403	T	A	76063403	3	1	824	1	0	0	0	0	1	0	0	0	5940	1725	60	5	3172	5	FILIP1	6	76063403	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09		76063403	95051664	17	69365										
PHIP	0	genome.wustl.edu	37	chr6	79698009	79698009	+	Frame_Shift_Del	DEL	G	G	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tcttgtacgataattgtgttGatttgtctgttgctttttgg							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	6	79698009	79698009	G	-	DEL	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	frame_shift_del	c.2377	p.Q793fs	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	87	0	0	43	9	16.98	-	-	-	-	79698009	G	-	79698009	7	5	824	1	0	1	0	1	0	0	0	0	11916	1299	45	0	3168	0	PHIP	6	79698009	Frame_Shift_Del	DEL	G	TCGA-E2-A56Z-01A-12D-A29N-09	3634606	79698009	91417058	18	69366	499	2								
PHIP	0	genome.wustl.edu	37	chr6	79698011	79698011	+	Missense_Mutation	SNP	T	T	A													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ttgtacgataattgtgttgaTttgtctgttgctttttggat							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	6	79698011	79698011	T	A	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.2375	p.N792I	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	87	0	0	41	10	19.61	-	-	-	A	79698011	T	A	79698011	3	1	824	1	0	0	0	0	1	0	0	0	11916	1493	52	5	3170	5	PHIP	6	79698011	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09	2	79698011	91417056	19	69367	499	2								
PEX7	0	genome.wustl.edu	37	chr6	137191068	137191068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ggttgactgtagtttgagagGctgggacttaaggaatgtac	15	4	0	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	6	137191068	137191068	G	T	SNP	PEX7	ENST00000318471	human	ensembl	69_37n	1	known	missense	c.674	p.G225V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357	111	0	0	39	13	25	-	-	-	T	137191068	G	T	137191068	3	4	824	1	0	0	0	0	1	0	0	0	11825	1203	42	4	700	4	PEX7	6	137191068	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	57493057	137191068	33923999	20	69368										
VPS41	0	genome.wustl.edu	37	chr7	38908841	38908841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	cttcagcttgggttcctcttCgctctcttcttcctgcacaa	6	15	4	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	7	38908841	38908841	C	T	SNP	VPS41	ENST00000310301	human	ensembl	69_37n	-1	known	missense	c.73	p.E25K	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	53	0	0	24	13	35.14	-	-	-	T	38908841	C	T	38908841	3	4	824	1	0	0	0	0	1	0	0	0	17307	893	31	1	2599	1	VPS41	7	38908841	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		38908841	120229822	21	69369										
KIF27	0	genome.wustl.edu	37	chr9	86518580	86518580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	aatatgtgaactcttcctgcGtgggtccccaagagcgctta	10	11	1	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	9	86518580	86518580	G	A	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	missense	c.853	p.R285C	0.992	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	61	0	0	22	3	12	-	-	-	A	86518580	G	A	86518580	3	1	824	1	0	0	0	0	1	0	0	0	8348	1145	40	1	3412	1	KIF27	9	86518580	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09		86518580	54694851	22	69370										
SUSD1	0	genome.wustl.edu	37	chr9	114874096	114874096	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	acgaactgattccatagggtCcaaccgttgtccttttatgg	9	10	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	9	114874096	114874096	C	T	SNP	SUSD1	ENST00000415074	human	ensembl	69_37n	-1	novel	nonsense	c.450	p.W150*	0.009	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SUSD1	HGNC	ENSG00000106868	57	0	0	40	15	27.27	-	-	-	T	114874096	C	T	114874096	4	4	824	1	0	0	0	0	0	1	0	0	15498	855	30	2	1274	2	SUSD1	9	114874096	Nonsense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	28355516	114874096	26339335	23	69371										
HSPA5	0	genome.wustl.edu	37	chr9	128002548	128002548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tctttgtttgcccacctccaAtatcaacttgaatgtatggt	6	10	2	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	9	128002548	128002548	A	G	SNP	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	missense	c.395	p.I132T	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	65	0	0	18	28	60.87	-	-	-	G	128002548	A	G	128002548	3	3	824	1	0	0	0	0	1	0	0	0	7467	101	4	5	1593	5	HSPA5	9	128002548	Missense_Mutation	SNP	A	TCGA-E2-A56Z-01A-12D-A29N-09	13128452	128002548	13210883	24	69372										
COL5A1	0	genome.wustl.edu	37	chr9	137593087	137593087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tcgactgtaaaaagaagaccAccaaattcctcgaccgcagc	7	13	0	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	9	137593087	137593087	A	G	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.562	p.T188A	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	74	0	0	55	7	11.29	-	-	-	G	137593087	A	G	137593087	3	3	824	1	0	0	0	0	1	0	0	0	3726	159	6	5	576	5	COL5A1	9	137593087	Missense_Mutation	SNP	A	TCGA-E2-A56Z-01A-12D-A29N-09	9590539	137593087	3620344	25	69373										
CAMK2G	0	genome.wustl.edu	37	chr10	75608353	75608353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ctcaggggacaagtaacctgGggtgccagcaaaacctgtag	13	10	1	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	10	75608353	75608353	G	T	SNP	CAMK2G	ENST00000423381	human	ensembl	69_37n	-1	known	missense	c.532	p.P178T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660	40	0	0	16	8	33.33	-	-	-	T	75608353	G	T	75608353	3	4	824	1	0	0	0	0	1	0	0	0	2627	1232	43	4	1294	4	CAMK2G	10	75608353	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09		75608353	59926394	26	69374										
USH1C	0	genome.wustl.edu	37	chr11	17547981	17547981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	caggggagcccaggctgcctCgcacgccctgaaagagagat	14	13	0	3			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	17547981	17547981	C	T	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.587	p.R196Q	0.515	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	50	0	0	7	15	68.18	-	-	-	T	17547981	C	T	17547981	3	4	824	1	0	0	0	0	1	0	0	0	17131	884	31	1	2270	1	USH1C	11	17547981	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		17547981	117458535	27	69375										
LRRC4C	0	genome.wustl.edu	37	chr11	40136396	40136396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	cacattggtggtctcccagtCgaccactggagtgggaccca	12	13	1	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	40136396	40136396	C	T	SNP	LRRC4C	ENST00000527150	human	ensembl	69_37n	-1	known	missense	c.1447	p.D483N	0.935	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	LRRC4C	HGNC	ENSG00000148948	188	0	0	84	17	16.83	-	-	-	T	40136396	C	T	40136396	3	4	824	1	0	0	0	0	1	0	0	0	9074	884	31	1	479	1	LRRC4C	11	40136396	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	22588415	40136396	94870120	28	69376										
PLEKHB1	0	genome.wustl.edu	37	chr11	73364048	73364048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	agacagcactgctggaggcaAactccaccccggtgagtctc	11	14	1	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	73364048	73364048	A	C	SNP	PLEKHB1	ENST00000354190	human	ensembl	69_37n	1	known	missense	c.379	p.N127H	0.644	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB1	HGNC	ENSG00000021300	35	0	0	16	4	20	-	-	-	C	73364048	A	C	73364048	3	2	824	1	0	0	0	0	1	0	0	0	12138	14	1	5	397	5	PLEKHB1	11	73364048	Missense_Mutation	SNP	A	TCGA-E2-A56Z-01A-12D-A29N-09	33227652	73364048	61642468	29	69377										
RAB6A	0	genome.wustl.edu	37	chr11	73390734	73390734	+	Missense_Mutation	SNP	C	C	T													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tgtcctgtgtgctttccattCccggcaaagctgctgctaca							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	73390734	73390734	C	T	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.527	p.G176E	1.000	smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	115	0	0	84	28	25	-	-	-	T	73390734	C	T	73390734	3	4	824	1	0	0	0	0	1	0	0	0	13034	855	30	2	107	2	RAB6A	11	73390734	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	26686	73390734	61615782	30	69378	500	3								
RAB6A	0	genome.wustl.edu	37	chr11	73390735	73390735	+	Missense_Mutation	SNP	C	C	T													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gtcctgtgtgctttccattcCcggcaaagctgctgctacac							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	73390735	73390735	C	T	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.526	p.G176R	1.000	smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	116	0	0	83	29	25.89	-	-	-	T	73390735	C	T	73390735	3	4	824	1	0	0	0	0	1	0	0	0	13034	632	22	4	108	4	RAB6A	11	73390735	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	1	73390735	61615781	31	69379	500	3								
RAB6A	0	genome.wustl.edu	37	chr11	73390744	73390744	+	Missense_Mutation	SNP	C	C	T													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gctttccattcccggcaaagCtgctgctacacgtcgaaaga							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	73390744	73390744	C	T	SNP	RAB6A	ENST00000310653	human	ensembl	69_37n	-1	known	missense	c.517	p.A173T	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	115	0	0	82	27	24.77	-	-	-	T	73390744	C	T	73390744	3	4	824	1	0	0	0	0	1	0	0	0	13034	797	28	4	117	4	RAB6A	11	73390744	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09	9	73390744	61615772	32	69380	500	3								
C2CD3	0	genome.wustl.edu	37	chr11	73850818	73850818	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tttctgtcatgtcagtggtaGgaagtggatggtagctgtcg	15	5	3	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	73850818	73850818	G	C	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.539	p.P180R	0.997	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	87	0	0	70	35	33.33	-	-	-	C	73850818	G	C	73850818	3	2	824	1	0	0	0	0	1	0	0	0	2174	1000	35	4	5464	4	C2CD3	11	73850818	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	460074	73850818	61155698	33	69381										
NAALAD2	0	genome.wustl.edu	37	chr11	89885543	89885543	+	Frame_Shift_Del	DEL	A	A	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gactactttgctcctgaggtAcagccatatcccaaaggatg							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	89885543	89885543	A	-	DEL	NAALAD2	ENST00000534061	human	ensembl	69_37n	1	known	frame_shift_del	c.687	p.Q230fs	0.997	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616	56	0	0	14	2	12.5	-	-	-	-	89885543	A	-	89885543	7	5	824	1	0	1	0	1	0	0	0	0	10200	378	14	0	709	0	NAALAD2	11	89885543	Frame_Shift_Del	DEL	A	TCGA-E2-A56Z-01A-12D-A29N-09	16034725	89885543	45120973	34	69382										
UBE4A	0	genome.wustl.edu	37	chr11	118239438	118239438	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tggctgagattagccgctcaTtccgatcacagcaggaaata	10	10	2	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	118239438	118239438	T	A	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	missense	c.214	p.F72I	0.998	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	53	0	0	5	8	61.54	-	-	-	A	118239438	T	A	118239438	3	1	824	1	0	0	0	0	1	0	0	0	16979	1493	52	5	220	5	UBE4A	11	118239438	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09	28353895	118239438	16767078	35	69383										
HSPA8	0	genome.wustl.edu	37	chr11	122929479	122929479	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ggtgcaggaggtatgcctgtGagttcaaacttgccaagcag	14	8	1	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	122929479	122929479	G	A	SNP	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	silent	c.1383	p.L461	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	102	0	0	8	24	75	-	-	-	A	122929479	G	A	122929479	2	1	824	1	0	0	0	0	0	0	0	1	7469	1277	45	2		2	HSPA8	11	122929479	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	4690041	122929479	12077037	36	69384										
NCAPD3	0	genome.wustl.edu	37	chr11	134055270	134055270	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ttgtattattctgctgtagtCcagcctgggtgaggagccag							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	11	134055270	134055270	C	-	DEL	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	frame_shift_del	c.2197	p.D733fs	1.000	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	74	0	0	13	2	13.33	-	-	-	-	134055270	C	-	134055270	7	5	824	1	0	1	0	1	0	0	0	0	10278	855	30	0	2375	0	NCAPD3	11	134055270	Frame_Shift_Del	DEL	C	TCGA-E2-A56Z-01A-12D-A29N-09	11125791	134055270	951246	37	69385										
PAWR	0	genome.wustl.edu	37	chr12	80083615	80083615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	cactggggcccgagctcttgCccttctctgggacgccgtcc	12	17	2	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	12	80083615	80083615	C	G	SNP	PAWR	ENST00000328827	human	ensembl	69_37n	-1	known	missense	c.410	p.G137A	1.000	NULL	NULL	-	no_errors	PAWR	HGNC	ENSG00000177425	31	0	0	23	4	14.81	-	-	-	G	80083615	C	G	80083615	3	3	824	1	0	0	0	0	1	0	0	0	11550	739	26	4	636	4	PAWR	12	80083615	Missense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		80083615	53768280	38	69386										
MYO1H	0	genome.wustl.edu	37	chr12	109879456	109879456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ttacaagtgaaatcttcaggGgaaggaaagacggctacaca	11	7	2	2			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	12	109879456	109879456	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	missense	c.2557	p.G853R	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	37	0	0	29	11	27.5	-	-	-	A	109879456	G	A	109879456	3	1	824	1	0	0	0	0	1	0	0	0	10147	1233	43	4	2625	4	MYO1H	12	109879456	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	29795841	109879456	23972439	39	69387										
UGGT2	0	genome.wustl.edu	37	chr13	96684189	96684189	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	tgcacagtttccaaaaactgCcaaaatttttcattactttc	3	10	1	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	13	96684189	96684189	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	nonsense	c.195	p.W65*	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	22	0	0	7	3	30	-	-	-	T	96684189	C	T	96684189	4	4	824	1	0	0	0	0	0	1	0	0	17039	740	26	4	4507	4	UGGT2	13	96684189	Nonsense_Mutation	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		96684189	18485689	40	69388										
OR4K5	0	genome.wustl.edu	37	chr14	20389502	20389502	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gctggcttcccatattgcagTagtaatattattctttggac	8	8	1	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	14	20389502	20389502	T	C	SNP	OR4K5	ENST00000315915	human	ensembl	69_37n	1	known	missense	c.737	p.V246A	0.702	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K5	HGNC	ENSG00000176281	131	0	0	90	17	15.89	-	-	-	C	20389502	T	C	20389502	3	2	824	1	0	0	0	0	1	0	0	0	11146	1638	57	5	739	5	OR4K5	14	20389502	Missense_Mutation	SNP	T	TCGA-E2-A56Z-01A-12D-A29N-09		20389502	86960038	41	69389										
PNMA1	0	genome.wustl.edu	37	chr14	74179692	74179692	+	Frame_Shift_Del	DEL	A	A	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	atcgcggggttgttggacttAaggatgcgaataacatcagc							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	14	74179692	74179692	A	-	DEL	PNMA1	ENST00000316836	human	ensembl	69_37n	-1	known	frame_shift_del	c.651	p.K218fs	1.000	NULL	superfamily_Globin-like	-	no_errors	PNMA1	HGNC	ENSG00000176903	97	0	0	12	2	14.29	-	-	-	-	74179692	A	-	74179692	7	5	824	1	0	1	0	1	0	0	0	0	12227	349	13	0	414	0	PNMA1	14	74179692	Frame_Shift_Del	DEL	A	TCGA-E2-A56Z-01A-12D-A29N-09	53790190	74179692	33169848	42	69390										
HERC2	0	genome.wustl.edu	37	chr15	28501279	28501279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gtgcccgggcccgctcctccGcggtgggcagcagcacggac	16	17	0	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	15	28501279	28501279	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.2702	p.A901V	0.996	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	80	0	0	32	13	28.89	-	-	-	A	28501279	G	A	28501279	3	1	824	1	0	0	0	0	1	0	0	0	7109	1087	38	1	12106	1	HERC2	15	28501279	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09		28501279	74030113	43	69391										
ZNF397	0	genome.wustl.edu	37	chr18	32822883	32822883	+	Frame_Shift_Del	DEL	T	T	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	aagtgatgtgggaaaaggaaTttacagcctggagcatgtaa							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	18	32822883	32822883	T	-	DEL	ZNF397	ENST00000588119	human	ensembl	69_37n	1	putative	frame_shift_del	c.447	p.L150fs	0.002	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF397	HGNC	ENSG00000186812	11	0	0	4	2	33.33	-	-	-	-	32822883	T	-	32822883	7	5	824	1	0	1	0	1	0	0	0	0	17979	1508	52	0		0	ZNF397	18	32822883	Frame_Shift_Del	DEL	T	TCGA-E2-A56Z-01A-12D-A29N-09		32822883	45254365	44	69392										
C19orf47	0	genome.wustl.edu	37	chr19	40827096	40827096	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	agatgcccagggcaggaaaaCggatgcgcctcagccgcagc	14	13	1	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	19	40827096	40827096	C	T	SNP	C19orf47	ENST00000584868	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C19orf47	HGNC	ENSG00000160392	38	0	0	17	3	15	-	-	-	T	40827096	C	T	40827096	1	4	824	0	1	0	0	0	0	0	0	0	1948	551	19	1		1	C19orf47	19	40827096	RNA	SNP	C	TCGA-E2-A56Z-01A-12D-A29N-09		40827096	18301887	45	69393										
VN1R4	0	genome.wustl.edu	37	chr19	53770436	53770436	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	gaacagtatcccaaatcctcGttcactgtgatgtttgtgta	8	9	1	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	19	53770436	53770436	G	A	SNP	VN1R4	ENST00000311170	human	ensembl	69_37n	-1	known	silent	c.483	p.N161	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567	217	0	0	65	38	36.89	-	-	-	A	53770436	G	A	53770436	2	1	824	1	0	0	0	0	0	0	0	1	17277	1136	40	1		1	VN1R4	19	53770436	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	12943340	53770436	5358547	46	69394										
PPIL2	0	genome.wustl.edu	37	chr22	22036753	22036753	+	Frame_Shift_Del	DEL	A	A	-													0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	aacagctaaatatcaaggccAagaacttccgggacctgctg							TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	22	22036753	22036753	A	-	DEL	PPIL2	ENST00000412327	human	ensembl	69_37n	1	known	frame_shift_del	c.415	p.K139fs	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	44	0	0	13	2	13.33	-	-	-	-	22036753	A	-	22036753	7	5	824	1	0	1	0	1	0	0	0	0	12404	131	5	0	445	0	PPIL2	22	22036753	Frame_Shift_Del	DEL	A	TCGA-E2-A56Z-01A-12D-A29N-09		22036753	29267813	47	69395										
FAM123B	0	genome.wustl.edu	37	chrX	63412663	63412663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	ctgctaaaaaagccttttagGcctttctttggcttgggcat	9	9	1	0			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	X	63412663	63412663	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	silent	c.504	p.G168	0.982	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	117	0	0	35	11	23.91	-	-	-	A	63412663	G	A	63412663	2	1	824	1	0	0	0	0	0	0	0	1	5463	1190	42	4		4	FAM123B	23	63412663	Silent	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09		63412663	91857897	48	69396										
IL13RA2	0	genome.wustl.edu	37	chrX	114239780	114239780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.904872247913239	0.950956937799043	0	1.16228070175439	0.4	0.991179622791967	0	catttttgggtaggtgtttgGcttacgcaaaagcagaccgg	13	7	0	1			TCGA-E2-A56Z-01A-12D-A29N-09	TCGA-E2-A56Z-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	da5821cd-8653-41e5-b2ee-d60e2e541f2f	fd447987-24d9-46ec-8f43-5525d8f42fde	X	114239780	114239780	G	T	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.1096	p.P366T	0.000	NULL	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	88	0	0	34	12	26.09	-	-	-	T	114239780	G	T	114239780	3	4	824	1	0	0	0	0	1	0	0	0	7684	1203	42	4	54	4	IL13RA2	23	114239780	Missense_Mutation	SNP	G	TCGA-E2-A56Z-01A-12D-A29N-09	50827117	114239780	41030780	49	69397										
SPEN	0	genome.wustl.edu	37	chr1	16254905	16254905	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgagaggaggccgattgaaCgaagtcaaagtcctgttcac	12	8	2	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	16254905	16254905	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.2170	p.R724*	0.998	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	36	0	0	19	5	20.83	-	-	-	T	16254905	C	T	16254905	4	4	825	1	0	0	0	0	0	1	0	0	15129	528	19	1	2212	1	SPEN	1	16254905	Nonsense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		16254905	232995716	1	69398										
TMEM57	0	genome.wustl.edu	37	chr1	25810703	25810703	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcagctccctttcgagcacCgagcgagggatccgctcaga	11	14	2	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	25810703	25810703	C	G	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	1	known	silent	c.1251	p.T417	0.303	pfam_Macoilin,superfamily_Prefoldin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	26	0	0	11	7	38.89	-	-	-	G	25810703	C	G	25810703	2	3	825	1	0	0	0	0	0	0	0	1	16279	639	23	3		3	TMEM57	1	25810703	Silent	SNP	C	TCGA-E2-A570-01A-11D-A29N-09	9555798	25810703	223439918	2	69399										
SSBP3	0	genome.wustl.edu	37	chr1	54692427	54692427	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttaaaaaaattttcccccAaaaaacccccctgaaaacaa	1	12	0	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	54692427	54692427	A	C	SNP	SSBP3	ENST00000326956	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSBP3	HGNC	ENSG00000157216	65	0	0	92	39	29.77	-	-	-	C	54692427	A	C	54692427	1	2	825	0	1	0	0	0	0	0	0	0	15272	145	5	5		5	SSBP3	1	54692427	RNA	SNP	A	TCGA-E2-A570-01A-11D-A29N-09	28881724	54692427	194558194	3	69400										
ELTD1	0	genome.wustl.edu	37	chr1	79357336	79357336	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccccaaagatccaggtggtgCcgagaaggaacagaagagcg	14	10	0	4			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	79357336	79357336	C	A	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	missense	c.1883	p.G628V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	41	0	0	19	3	13.64	-	-	-	A	79357336	C	A	79357336	3	1	825	1	0	0	0	0	1	0	0	0	5121	739	26	4	197	4	ELTD1	1	79357336	Missense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09	24664909	79357336	169893285	4	69401										
ITPKB	0	genome.wustl.edu	37	chr1	226924426	226924426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	atggaccctgagcctctgatCctgtaggggcagcccggccg	14	14	1	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	226924426	226924426	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.734	p.G245E	0.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	123	0	0	117	16	12.03	-	-	-	T	226924426	C	T	226924426	3	4	825	1	0	0	0	0	1	0	0	0	7972	855	30	2	2134	2	ITPKB	1	226924426	Missense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09	147567090	226924426	22326195	5	69402										
OR2T8	0	genome.wustl.edu	37	chr1	248084909	248084909	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcagtcttcgaaaacgccaTgtacatctgctgtgtgttaa	8	9	3	0			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	1	248084909	248084909	T	G	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.590	p.M197R	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	43	0	0	30	9	23.08	-	-	-	G	248084909	T	G	248084909	3	3	825	1	0	0	0	0	1	0	0	0	11103	1464	51	5	592	5	OR2T8	1	248084909	Missense_Mutation	SNP	T	TCGA-E2-A570-01A-11D-A29N-09	21160483	248084909	1165712	6	69403										
THADA	0	genome.wustl.edu	37	chr2	43776496	43776497	+	Frame_Shift_Ins	INS	-	-	GCTT													0	0	1	0	0	0	1	1	0	ttcagaatcatctgtaagcgINSgcttgctgactctgagggaa							TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	2	43776496	43776497	-	GCTT	INS	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2959_2958	p.R986fs	1.000:0.983	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	56	0	0	40	10	20	-	-	-	GCTT	43776497	-	GCTT	43776496	7	5	825	1	0	1	1	0	0	0	0	0	15935	1116	39	0	2978	0	THADA	2	43776496	Frame_Shift_Ins	INS	-	TCGA-E2-A570-01A-11D-A29N-09		43776496	199422877	7	69404										
RGPD4	0	genome.wustl.edu	37	chr2	108443541	108443541	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccgccccgtcgcctcgaaaGgtgagtggatctcgaagaga	13	12	1	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	2	108443541	108443541	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.72	p.K24N	0.261	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	122	0	0	62	32	33.68	-	-	-	C	108443541	G	C	108443541	3	2	825	1	0	0	0	0	1	0	0	0	13371	1014	35	4	74	4	RGPD4	2	108443541	Missense_Mutation	SNP	G	TCGA-E2-A570-01A-11D-A29N-09	64667045	108443541	134755832	8	69405										
KCTD6	0	genome.wustl.edu	37	chr3	58486742	58486742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctctcaccacattgacgcgtTacccggattccatgcttgga	8	14	1	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	3	58486742	58486742	T	C	SNP	KCTD6	ENST00000355076	human	ensembl	69_37n	1	known	missense	c.97	p.Y33H	0.996	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD6	HGNC	ENSG00000168301	90	0	0	33	16	32.65	-	-	-	C	58486742	T	C	58486742	3	2	825	1	0	0	0	0	1	0	0	0	8167	1754	61	5	103	5	KCTD6	3	58486742	Missense_Mutation	SNP	T	TCGA-E2-A570-01A-11D-A29N-09		58486742	139535688	9	69406										
SHQ1	0	genome.wustl.edu	37	chr3	72866534	72866534	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttctcttcttcagaaaaagaCactagaagaaaacgcattta	5	8	3	4			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	3	72866534	72866534	C	A	SNP	SHQ1	ENST00000325599	human	ensembl	69_37n	-1	known	silent	c.729	p.V243	0.631	pfam_SHQ1	pfam_SHQ1,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	SHQ1	HGNC	ENSG00000144736	38	0	0	12	5	29.41	-	-	-	A	72866534	C	A	72866534	2	1	825	1	0	0	0	0	0	0	0	1	14381	492	17	4		4	SHQ1	3	72866534	Silent	SNP	C	TCGA-E2-A570-01A-11D-A29N-09	14379792	72866534	125155896	10	69407										
WDR52	0	genome.wustl.edu	37	chr3	113119414	113119414	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccaaggcagttgtggccatGagataagtgagaggagaaac	14	6	0	3			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	3	113119414	113119414	G	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	silent	c.1452	p.L484	0.987	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	42	0	0	35	5	12.5	-	-	-	T	113119414	G	T	113119414	2	4	825	1	0	0	0	0	0	0	0	1	17401	1277	45	2		2	WDR52	3	113119414	Silent	SNP	G	TCGA-E2-A570-01A-11D-A29N-09	40252880	113119414	84903016	11	69408										
IL4	0	genome.wustl.edu	37	chr5	132018264	132018264	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	atcatgagagagaaatattcAaagtgttcgagctgaatatt							TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	5	132018264	132018264	A	-	DEL	IL4	ENST00000231449	human	ensembl	69_37n	1	known	frame_shift_del	c.447	p.K150fs	0.008	superfamily_4_helix_cytokine-like_core,smart_Interleukin-4/13,pirsf_Interleukin-4	pfam_Interleukin-4,superfamily_4_helix_cytokine-like_core,smart_Interleukin-4/13,pirsf_Interleukin-4,prints_Interleukin-4	-	no_errors	IL4	HGNC	ENSG00000113520	87	0	0	50	15	23.08	-	-	-	-	132018264	A	-	132018264	7	5	825	1	0	1	0	1	0	0	0	0	7750	117	5	0	461	0	IL4	5	132018264	Frame_Shift_Del	DEL	A	TCGA-E2-A570-01A-11D-A29N-09		132018264	48896996	12	69409										
BTNL2	0	genome.wustl.edu	37	chr6	32372957	32372957	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgagcggtaccacctcacCtccacgtgcattgtggtcct	9	15	2	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	6	32372957	32372957	C	T	SNP	BTNL2	ENST00000468270	human	ensembl	69_37n	-1	known	silent	c.186	p.E62	0.970	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	BTNL2	HGNC	ENSG00000204290	91	0	0	44	15	25.42	-	-	-	T	32372957	C	T	32372957	2	4	825	1	0	0	0	0	0	0	0	1	1574	680	24	4		4	BTNL2	6	32372957	Silent	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		32372957	138742110	13	69410										
CACNA2D1	0	genome.wustl.edu	37	chr7	81636994	81636994	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttatcaattaacttttaaCctttaagtttgtcttatttt	2	5	2	0			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	7	81636994	81636994	C	T	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	splice_site	c.1440+1	e16+1	1.000	-	-	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	41	0	0	50	31	38.27	-	-	-	T	81636994	C	T	81636994	5	4	825	1	0	0	0	0	0	0	1	0	2573	521	18	4	1930	4	CACNA2D1	7	81636994	Splice_Site	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		81636994	77501669	14	69411										
LY96	0	genome.wustl.edu	37	chr8	74922237	74922237	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gggattttttcttttaaaggGagagatttaaagcaattata	9	2	1	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	8	74922237	74922237	G	A	SNP	LY96	ENST00000284818	human	ensembl	69_37n	1	known	silent	c.204	p.R68	0.962	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	-	no_errors	LY96	HGNC	ENSG00000154589	68	0	0	52	21	28.77	-	-	-	A	74922237	G	A	74922237	2	1	825	1	0	0	0	0	0	0	0	1	9169	1188	41	2		2	LY96	8	74922237	Silent	SNP	G	TCGA-E2-A570-01A-11D-A29N-09		74922237	71441785	15	69412										
DENND3	0	genome.wustl.edu	37	chr8	142175384	142175384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tcgacacccagtcggaggagGacaggtgcttcactgttgtg	14	10	1	0			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	8	142175384	142175384	G	A	SNP	DENND3	ENST00000262585	human	ensembl	69_37n	1	known	missense	c.1309	p.D437N	0.976	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339	87	0	0	44	19	30.16	-	-	-	A	142175384	G	A	142175384	3	1	825	1	0	0	0	0	1	0	0	0	4468	1174	41	2	1347	2	DENND3	8	142175384	Missense_Mutation	SNP	G	TCGA-E2-A570-01A-11D-A29N-09	67253147	142175384	4188638	16	69413										
ZNF510	0	genome.wustl.edu	37	chr9	99525348	99525348	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgttcacccctaaagtgaccTggagtctaaccactcctgca	7	14	2	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	9	99525348	99525348	T	C	SNP	ZNF510	ENST00000472201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF510	HGNC	ENSG00000081386	59	0	0	34	15	30.61	-	-	-	C	99525348	T	C	99525348	1	2	825	0	1	0	0	0	0	0	0	0	18050	1595	55	5		5	ZNF510	9	99525348	RNA	SNP	T	TCGA-E2-A570-01A-11D-A29N-09		99525348	41688083	17	69414										
TUBAL3	0	genome.wustl.edu	37	chr10	5436290	5436290	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcctgggggctgggtagacCgagaactccagcttagtctt	13	10	1	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	10	5436290	5436290	C	T	SNP	TUBAL3	ENST00000380419	human	ensembl	69_37n	-1	known	silent	c.531	p.S177	0.018	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462	46	0	0	24	14	36.84	-	-	-	T	5436290	C	T	5436290	2	4	825	1	0	0	0	0	0	0	0	1	16848	639	23	1		1	TUBAL3	10	5436290	Silent	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		5436290	130098457	18	69415										
GATA3	0	genome.wustl.edu	37	chr10	8111497	8111497	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaccaccacaaccacactctGgaggaggaatgccaatgggg	12	12	1	0			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	10	8111497	8111497	G	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	nonsense	c.986	p.W329*	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	100	0	0	54	14	20.59	-	-	-	A	8111497	G	A	8111497	4	1	825	1	0	0	0	0	0	1	0	0	6305	1357	47	4	1000	4	GATA3	10	8111497	Nonsense_Mutation	SNP	G	TCGA-E2-A570-01A-11D-A29N-09	2675207	8111497	127423250	19	69416										
CREBZF	0	genome.wustl.edu	37	chr11	85375221	85375222	+	Frame_Shift_Ins	INS	-	-	T													0	0	1	0	0	0	1	1	0	ccagaccccggactcgactcINStccagccccatcacgtactc							TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	11	85375221	85375222	-	T	INS	CREBZF	ENST00000525639	human	ensembl	69_37n	-1	known	frame_shift_ins	c.699_698	p.S234fs	1.000:1.000	pfam_bZIP_1	pfam_bZIP_1	-	no_errors	CREBZF	HGNC	ENSG00000137504	111	0	0	74	26	26	-	-	-	T	85375222	-	T	85375221	7	5	825	1	0	1	1	0	0	0	0	0	3893	912	32	0	369	0	CREBZF	11	85375221	Frame_Shift_Ins	INS	-	TCGA-E2-A570-01A-11D-A29N-09		85375221	49631295	20	69417										
ITFG2	0	genome.wustl.edu	37	chr12	2939771	2939774	+	RNA	DEL	CTCC	CTCC	-													0	0	1	0	0	0	1	1	0	tagggagagaggtgccctttCtccctccctccctctcccat							TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	CTCC	CTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	12	2939771	2939774	CTCC	-	DEL	ITFG2	ENST00000552005	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000:0.006:0.004	-	-	-	no_errors	ITFG2	HGNC	ENSG00000111203	61	0	0	28	4	12.5	-	-	-	-	2939774	CTCC	-	2939771	6	5	825	0	1	1	0	1	0	0	0	0	7924	928	32	0		0	ITFG2	12	2939771	RNA	DEL	CTCC	TCGA-E2-A570-01A-11D-A29N-09		2939771	130912124	21	69418										
MYH7	0	genome.wustl.edu	37	chr14	23894537	23894537	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cattctggcgagcacacctcGggactgggcctggatacgcg	14	13	1	0			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	14	23894537	23894537	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	nonsense	c.2377	p.R793*	1.000	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	45	0	0	18	12	40	-	-	-	A	23894537	G	A	23894537	4	1	825	1	0	0	0	0	0	1	0	0	10111	1124	39	1	3510	1	MYH7	14	23894537	Nonsense_Mutation	SNP	G	TCGA-E2-A570-01A-11D-A29N-09		23894537	83455003	22	69419										
GCOM1	0	genome.wustl.edu	37	chr15	57929916	57929916	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtcatcaactgcaacttcaActcctagaacatgaaacaga	5	12	3	3			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	15	57929916	57929916	A	G	SNP	GCOM1	ENST00000380569	human	ensembl	69_37n	1	known	silent	c.957	p.Q319	0.436	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878	47	0	0	16	9	36	-	-	-	G	57929916	A	G	57929916	2	3	825	1	0	0	0	0	0	0	0	1	6355	40	2	5		5	GCOM1	15	57929916	Silent	SNP	A	TCGA-E2-A570-01A-11D-A29N-09		57929916	44601476	23	69420										
IREB2	0	genome.wustl.edu	37	chr15	78789556	78789556	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agctccacttcagttccttcCaggagaaaatgcagattcct	7	12	1	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	15	78789556	78789556	C	G	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.2684	p.P895R	0.997	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	58	0	0	33	13	27.66	-	-	-	G	78789556	C	G	78789556	3	3	825	1	0	0	0	0	1	0	0	0	7880	594	21	4	2766	4	IREB2	15	78789556	Missense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09	20859640	78789556	23741836	24	69421										
NEURL4	0	genome.wustl.edu	37	chr17	7222464	7222464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagttgagcctctcaggcgCgcaggtgatgactcccagga	14	11	1	3			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	17	7222464	7222464	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.3589	p.A1197T	1.000	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	116	0	0	44	23	34.33	-	-	-	T	7222464	C	T	7222464	3	4	825	1	0	0	0	0	1	0	0	0	10419	768	27	1	1131	1	NEURL4	17	7222464	Missense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		7222464	73972746	25	69422										
GNAS	0	genome.wustl.edu	37	chr20	57429324	57429324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccaatcgcgcttgacggccCgcccatcaaggtctccggag	11	17	2	1			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	20	57429324	57429324	C	T	SNP	GNAS	ENST00000371100	human	ensembl	69_37n	1	putative	missense	c.1004	p.P335L	1.000	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	33	0	0	13	6	31.58	-	-	-	T	57429324	C	T	57429324	3	4	825	1	0	0	0	0	1	0	0	0	6562	652	23	1	1748	1	GNAS	20	57429324	Missense_Mutation	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		57429324	5596196	26	69423										
CCDC157	0	genome.wustl.edu	37	chr22	30766398	30766398	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agccctgaatatctgactacCaagttaatcaagccctcctc	5	14	2	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	22	30766398	30766398	C	A	SNP	CCDC157	ENST00000338306	human	ensembl	69_37n	1	known	silent	c.504	p.T168	0.997	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860	58	0	0	29	4	12.12	-	-	-	A	30766398	C	A	30766398	2	1	825	1	0	0	0	0	0	0	0	1	2815	581	21	4		4	CCDC157	22	30766398	Silent	SNP	C	TCGA-E2-A570-01A-11D-A29N-09		30766398	20538168	27	69424										
WDR13	0	genome.wustl.edu	37	chrX	48462671	48462671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcctctcagggtggtagacaAcgaggggaccctgcagctga	14	11	1	2			TCGA-E2-A570-01A-11D-A29N-09	TCGA-E2-A570-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0ebb7058-4311-40a6-ac47-6b5f0c38492f	714b82cd-b87d-4c9f-af14-386a442d1c74	X	48462671	48462671	A	G	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	missense	c.1166	p.N389S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	81	0	0	50	8	13.79	-	-	-	G	48462671	A	G	48462671	3	3	825	1	0	0	0	0	1	0	0	0	17372	43	2	5	1196	5	WDR13	23	48462671	Missense_Mutation	SNP	A	TCGA-E2-A570-01A-11D-A29N-09		48462671	106807889	28	69425										
CASZ1	0	genome.wustl.edu	37	chr1	10707860	10707862	+	In_Frame_Del	DEL	CTC	CTC	-													0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gctcatcgagggactcacttCtcctggaactggaggaatcc							TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	1	10707860	10707862	CTC	-	DEL	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	in_frame_del	c.3495_3493	p.E1165in_frame_del	1.000:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	74	0	0	24	4	14.29	-	-	-	-	10707862	CTC	-	10707860	7	5	826	1	0	1	0	1	0	0	0	0	2710	912	32	0	1812	0	CASZ1	1	10707860	In_Frame_Del	DEL	CTC	TCGA-E2-A573-01A-11D-A29N-09		10707860	238542761	1	69426										
MYSM1	0	genome.wustl.edu	37	chr1	59127079	59127079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctcaaaccacagtacataccTatgggagagcctgtattttt	7	10	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	1	59127079	59127079	T	C	SNP	MYSM1	ENST00000472487	human	ensembl	69_37n	-1	known	missense	c.2269	p.S757G	0.988	NULL	pfam_SWIRM,pfam_JAB1_Mov34_MPN_PAD1,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB1_Mov34_MPN_PAD1,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601	23	0	0	31	9	22.5	-	-	-	C	59127079	T	C	59127079	3	2	826	1	0	0	0	0	1	0	0	0	10173	1536	53	5	229	5	MYSM1	1	59127079	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	48419219	59127079	190123542	2	69427										
PSMA5	0	genome.wustl.edu	37	chr1	109952635	109952635	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tggcttctttcaaagtcataGacttgaaacaaagaaggcaa	8	7	3	3			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	1	109952635	109952635	G	T	SNP	PSMA5	ENST00000271308	human	ensembl	69_37n	-1	known	missense	c.563	p.S188Y	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA5	HGNC	ENSG00000143106	37	0	0	33	4	10.81	-	-	-	T	109952635	G	T	109952635	3	4	826	1	0	0	0	0	1	0	0	0	12750	956	33	2	170	2	PSMA5	1	109952635	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	50825556	109952635	139297986	3	69428										
NUP210L	0	genome.wustl.edu	37	chr1	154062034	154062034	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tacagctggactagggttcaGgacacctggatgatttccaa	11	9	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	1	154062034	154062034	G	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.2224	p.L742V	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	23	0	0	30	6	16.67	-	-	-	C	154062034	G	C	154062034	3	2	826	1	0	0	0	0	1	0	0	0	10834	991	35	4	3542	4	NUP210L	1	154062034	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	44109399	154062034	95188587	4	69429										
H3F3A	0	genome.wustl.edu	37	chr1	226252077	226252077	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctcgtacaaagcagactgccCgcaaatcgaccggtggtaaa	10	12	0	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	1	226252077	226252077	C	G	SNP	H3F3A	ENST00000366813	human	ensembl	69_37n	1	known	missense	c.25	p.R9G	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3A	HGNC	ENSG00000163041	78	0	0	79	12	13.19	-	-	-	G	226252077	C	G	226252077	3	3	826	1	0	0	0	0	1	0	0	0	6984	652	23	3	27	3	H3F3A	1	226252077	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	72190043	226252077	22998544	5	69430										
ATP6V1C2	0	genome.wustl.edu	37	chr2	10915114	10915114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ttgttttaaggttcactgttCgtgaattttactatgatgag	9	4	1	3			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	2	10915114	10915114	C	T	SNP	ATP6V1C2	ENST00000272238	human	ensembl	69_37n	1	known	missense	c.742	p.R248C	0.992	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882	27	0	0	44	8	15.38	-	-	-	T	10915114	C	T	10915114	3	4	826	1	0	0	0	0	1	0	0	0	1185	884	31	1	776	1	ATP6V1C2	2	10915114	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		10915114	232284259	6	69431										
LCT	0	genome.wustl.edu	37	chr2	136567102	136567102	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gtctttcacattgctccctgGtgtgtgggtaaagttatccc	10	10	2	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	2	136567102	136567102	G	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2815	p.P939T	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	51	0	0	33	8	19.51	-	-	-	T	136567102	G	T	136567102	3	4	826	1	0	0	0	0	1	0	0	0	8747	1261	44	4	3008	4	LCT	2	136567102	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	125651988	136567102	106632271	7	69432										
SCN7A	0	genome.wustl.edu	37	chr2	167301344	167301344	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tccaaggtcagaaaacatacGtttaaaattatgcatatgat	6	6	1	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	2	167301344	167301344	G	A	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	silent	c.1554	p.N518	0.660	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	21	0	0	21	6	21.43	-	-	-	A	167301344	G	A	167301344	2	1	826	1	0	0	0	0	0	0	0	1	14011	1136	40	1		1	SCN7A	2	167301344	Silent	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	30734242	167301344	75898029	8	69433										
SP140	0	genome.wustl.edu	37	chr2	231102991	231102991	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tgatgtattgtgtactcagtGaactggagaagacatttggc	12	5	1	4			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	2	231102991	231102991	G	T	SNP	SP140	ENST00000392045	human	ensembl	69_37n	1	known	nonsense	c.301	p.E101*	0.025	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	58	0	0	46	10	17.86	-	-	-	T	231102991	G	T	231102991	4	4	826	1	0	0	0	0	0	1	0	0	15051	1291	45	2	311	2	SP140	2	231102991	Nonsense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	63801647	231102991	12096382	9	69434										
IQSEC1	0	genome.wustl.edu	37	chr3	12977712	12977712	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tccatgccgtgcagggctgtCtggggttcggtgtcccgggc	17	12	1	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	3	12977712	12977712	C	A	SNP	IQSEC1	ENST00000273221	human	ensembl	69_37n	-1	known	missense	c.846	p.Q282H	0.009	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC1	HGNC	ENSG00000144711	84	0	0	59	17	22.37	-	-	-	A	12977712	C	A	12977712	3	1	826	1	0	0	0	0	1	0	0	0	7871	912	32	2	2638	2	IQSEC1	3	12977712	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		12977712	185044718	10	69435										
BAP1	0	genome.wustl.edu	37	chr3	52442072	52442072	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	cacgctcagcaaggcatgagTtgcacaagagttgggtatca	12	9	2	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	3	52442072	52442072	T	C	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.277	p.T93A	1.000	pfam_Peptidase_C12,prints_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	36	0	0	16	14	46.67	-	-	-	C	52442072	T	C	52442072	3	2	826	1	0	0	0	0	1	0	0	0	1315	1725	60	5	1964	5	BAP1	3	52442072	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	39464360	52442072	145580358	11	69436										
HEG1	0	genome.wustl.edu	37	chr3	124731767	124731767	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ttgaggaactagtatttcagGatgggtcagcgagagctgtt	14	5	2	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	3	124731767	124731767	G	C	SNP	HEG1	ENST00000311127	human	ensembl	69_37n	-1	known	missense	c.2656	p.P886A	0.860	NULL	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	78	0	0	99	22	18.18	-	-	-	C	124731767	G	C	124731767	3	2	826	1	0	0	0	0	1	0	0	0	7095	1174	41	2	1537	2	HEG1	3	124731767	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	72289695	124731767	73290663	12	69437										
SERPINI1	0	genome.wustl.edu	37	chr3	167525056	167525056	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	acagtggaacaggaaattgaTttaaaagatgttttgaaggc	11	3	0	3			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	3	167525056	167525056	T	C	SNP	SERPINI1	ENST00000466865	human	ensembl	69_37n	1	novel	missense	c.31	p.F11L	0.999	pfam_Sepin_dom,superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SERPINI1	HGNC	ENSG00000163536	35	0	0	26	7	21.21	-	-	-	C	167525056	T	C	167525056	3	2	826	1	0	0	0	0	1	0	0	0	14206	1490	52	5	924	5	SERPINI1	3	167525056	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	42793289	167525056	30497374	13	69438										
CPEB2	0	genome.wustl.edu	37	chr4	15009075	15009075	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	atgaatcagatatctccattGaagaaaccgttttctggtaa	7	7	3	4			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	4	15009075	15009075	G	A	SNP	CPEB2	ENST00000538197	human	ensembl	69_37n	1	known	silent	c.1809	p.L603	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449	35	0	0	20	8	28.57	-	-	-	A	15009075	G	A	15009075	2	1	826	1	0	0	0	0	0	0	0	1	3831	1281	45	2		2	CPEB2	4	15009075	Silent	SNP	G	TCGA-E2-A573-01A-11D-A29N-09		15009075	176145201	14	69439										
CSN3	0	genome.wustl.edu	37	chr4	71110590	71110590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gcattaaccctgccttttttGgtaagttaatttcatctaac	5	9	2	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	4	71110590	71110590	G	T	SNP	CSN3	ENST00000304954	human	ensembl	69_37n	1	known	missense	c.54	p.L18F	1.000	pfam_Casein_kappa,pirsf_Casein_kappa	pfam_Casein_kappa,pirsf_Casein_kappa	-	no_errors	CSN3	HGNC	ENSG00000171209	29	0	0	28	4	12.5	-	-	-	T	71110590	G	T	71110590	3	4	826	1	0	0	0	0	1	0	0	0	3981	1362	47	4	56	4	CSN3	4	71110590	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	56101515	71110590	120043686	15	69440										
WDFY3	0	genome.wustl.edu	37	chr4	85603603	85603603	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gctggtgtttcaggaacttgCaaaaattccattctccaaaa	7	9	2	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	4	85603603	85603603	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	missense	c.9747	p.L3249F	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	31	0	0	19	3	13.64	-	-	-	A	85603603	C	A	85603603	3	1	826	1	0	0	0	0	1	0	0	0	17367	709	25	4	853	4	WDFY3	4	85603603	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	14493013	85603603	105550673	16	69441										
PPT2	0	genome.wustl.edu	37	chr6	32123479	32123479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ttacagggggccttgtgtgcCgggctctgctttctgtcatg	14	10	3	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	6	32123479	32123479	C	T	SNP	PPT2	ENST00000361568	human	ensembl	69_37n	1	known	missense	c.370	p.R124W	1.000	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988	63	0	0	45	17	27.42	-	-	-	T	32123479	C	T	32123479	3	4	826	1	0	0	0	0	1	0	0	0	12489	643	23	1	384	1	PPT2	6	32123479	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		32123479	138991588	17	69442										
NFE2L3	0	genome.wustl.edu	37	chr7	26224313	26224313	+	Missense_Mutation	SNP	C	C	T													0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tacatttagaagagatccaaCagcaaggacttcacagtcac							TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	7	26224313	26224313	C	T	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.995	p.T332I	0.000	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	30	0	0	40	7	14.89	-	-	-	T	26224313	C	T	26224313	3	4	826	1	0	0	0	0	1	0	0	0	10441	478	17	4	1009	4	NFE2L3	7	26224313	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		26224313	132914350	18	69443	501	2								
NFE2L3	0	genome.wustl.edu	37	chr7	26224323	26224323	+	Silent	SNP	T	T	C													0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	agagatccaacagcaaggacTtcacagtcacaagaaccatt							TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	7	26224323	26224323	T	C	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	silent	c.1005	p.T335	0.002	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	30	0	0	35	7	16.67	-	-	-	C	26224323	T	C	26224323	2	2	826	1	0	0	0	0	0	0	0	1	10441	1596	56	5		5	NFE2L3	7	26224323	Silent	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	10	26224323	132914340	19	69444	501	2								
CNTNAP2	0	genome.wustl.edu	37	chr7	147914614	147914614	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ggcagtcctcgtcaaacccaCtggtaaggacaaggataccc	10	13	1	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	7	147914614	147914614	C	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.3245	p.T1082N	0.063	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	19	0	0	18	5	21.74	-	-	-	A	147914614	C	A	147914614	3	1	826	1	0	0	0	0	1	0	0	0	3677	565	20	4	3319	4	CNTNAP2	7	147914614	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	121690291	147914614	11224049	20	69445										
SGCZ	0	genome.wustl.edu	37	chr8	13965707	13965707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ggctctgctctgatgtgcggCgtctccacagagtgcccaaa	12	13	3	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	8	13965707	13965707	C	T	SNP	SGCZ	ENST00000382080	human	ensembl	69_37n	-1	known	silent	c.585	p.T195	0.993	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053	90	0	0	87	11	11.22	-	-	-	T	13965707	C	T	13965707	2	4	826	1	0	0	0	0	0	0	0	1	14292	755	27	1		1	SGCZ	8	13965707	Silent	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		13965707	132398315	21	69446										
C8orf58	0	genome.wustl.edu	37	chr8	22459837	22459837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ggacacaaggtaggggacagGtatatgtggggcaggtggtg	20	4	0	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	8	22459837	22459837	G	T	SNP	C8orf58	ENST00000495957	human	ensembl	69_37n	1	putative	missense	c.203	p.G68V	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C8orf58	HGNC	ENSG00000241852	29	0	0	15	7	31.82	-	-	-	T	22459837	G	T	22459837	3	4	826	1	0	0	0	0	1	0	0	0	2458	1276	44	4		4	C8orf58	8	22459837	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	8494130	22459837	123904185	22	69447										
DUSP4	0	genome.wustl.edu	37	chr8	29195879	29195879	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctgggatgcacttgtactgaTagtgtccttcaaagtggttt	11	7	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	8	29195879	29195879	T	A	SNP	DUSP4	ENST00000240100	human	ensembl	69_37n	-1	known	missense	c.719	p.Y240F	0.999	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP4	HGNC	ENSG00000120875	55	0	0	45	7	13.46	-	-	-	A	29195879	T	A	29195879	3	1	826	1	0	0	0	0	1	0	0	0	4862	1406	49	5	473	5	DUSP4	8	29195879	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	6736042	29195879	117168143	23	69448										
NUP188	0	genome.wustl.edu	37	chr9	131733098	131733098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tcatgccccagtgcttttggCctgggctctcctccgtcaca	9	16	3	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	9	131733098	131733098	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.974	p.A325V	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	75	0	0	48	39	44.83	-	-	-	T	131733098	C	T	131733098	3	4	826	1	0	0	0	0	1	0	0	0	10831	739	26	4	1016	4	NUP188	9	131733098	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		131733098	9480333	24	69449										
CRAT	0	genome.wustl.edu	37	chr9	131864751	131864751	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	aagttgctgactgtgtcctgCttggggcccggcactcggca	14	12	0	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	9	131864751	131864751	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	silent	c.558	p.K186	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	108	0	0	73	21	22.34	-	-	-	T	131864751	C	T	131864751	2	4	826	1	0	0	0	0	0	0	0	1	3877	796	28	4		4	CRAT	9	131864751	Silent	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	131653	131864751	9348680	25	69450										
DNA2	0	genome.wustl.edu	37	chr10	70190369	70190369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	attgtcaacagcagagtgtgTatagctggtcaacaaaacgc	10	8	2	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	10	70190369	70190369	T	C	SNP	DNA2	ENST00000399180	human	ensembl	69_37n	-1	known	missense	c.2290	p.T764A	1.000	NULL	pfam_DNA_replication_fac_Dna2	-	no_errors	DNA2	HGNC	ENSG00000138346	42	0	0	34	12	26.09	-	-	-	C	70190369	T	C	70190369	3	2	826	1	0	0	0	0	1	0	0	0	4632	1638	57	5	1182	5	DNA2	10	70190369	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09		70190369	65344378	26	69451										
DPF2	0	genome.wustl.edu	37	chr11	65107855	65107855	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tgatttctatcttccctgcaGccttggggagcagtactaca	9	11	2	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	11	65107855	65107855	G	T	SNP	DPF2	ENST00000528416	human	ensembl	69_37n	1	known	splice_site	c.33-1	e2-1	1.000	-	-	-	no_errors	DPF2	HGNC	ENSG00000133884	25	0	0	18	6	25	-	-	-	T	65107855	G	T	65107855	5	4	826	1	0	0	0	0	0	0	1	0	4752	985	34	4	38	4	DPF2	11	65107855	Splice_Site	SNP	G	TCGA-E2-A573-01A-11D-A29N-09		65107855	69898661	27	69452										
ACTN3	0	genome.wustl.edu	37	chr11	66318583	66318583	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	atgcacagcaagtcagtggcTgagctgagctgagacttgaa	13	8	1	4			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	11	66318583	66318583	T	A	SNP	ACTN3	ENST00000511191	human	ensembl	69_37n	1	known	silent	c.207	p.A69	0.001	NULL	NULL	-	no_errors	ACTN3	HGNC	ENSG00000248746	38	0	0	18	3	14.29	-	-	-	A	66318583	T	A	66318583	2	1	826	1	0	0	0	0	0	0	0	1	206	1595	55	5		5	ACTN3	11	66318583	Silent	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	1210728	66318583	68687933	28	69453										
TRPC6	0	genome.wustl.edu	37	chr11	101325833	101325833	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ggttgtttattgtgcccaacCtgtaatttgaaaagatttag	9	5	0	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	11	101325833	101325833	C	T	SNP	TRPC6	ENST00000344327	human	ensembl	69_37n	-1	known	splice_site	c.2485-1	e11-1	1.000	-	-	-	no_errors	TRPC6	HGNC	ENSG00000137672	38	0	0	27	17	38.64	-	-	-	T	101325833	C	T	101325833	5	4	826	1	0	0	0	0	0	0	1	0	16679	695	24	4	323	4	TRPC6	11	101325833	Splice_Site	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	35007250	101325833	33680683	29	69454										
ZW10	0	genome.wustl.edu	37	chr11	113619011	113619011	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctgtaatttgctgctatttgTtggaatcgaataaaccaaac	7	7	0	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	11	113619011	113619011	T	C	SNP	ZW10	ENST00000200135	human	ensembl	69_37n	-1	known	missense	c.1057	p.T353A	0.374	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827	52	0	0	49	23	31.94	-	-	-	C	113619011	T	C	113619011	3	2	826	1	0	0	0	0	1	0	0	0	18338	1725	60	5	1318	5	ZW10	11	113619011	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09	12293178	113619011	21387505	30	69455										
EEA1	0	genome.wustl.edu	37	chr12	93245024	93245024	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctttagcacggcaacatcttCtataccaggtctctgaagct	7	12	3	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	12	93245024	93245024	C	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.661	p.E221K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	55	0	0	43	31	41.89	-	-	-	T	93245024	C	T	93245024	3	4	826	1	0	0	0	0	1	0	0	0	4956	922	32	2	3658	2	EEA1	12	93245024	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		93245024	40606871	31	69456										
CCDC60	0	genome.wustl.edu	37	chr12	119772957	119772957	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	atccttgtcttgggggcacaGgctaaaacctgaaggatttt	11	8	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	12	119772957	119772957	G	C	SNP	CCDC60	ENST00000546345	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC60	HGNC	ENSG00000183273	40	0	0	27	6	18.18	-	-	-	C	119772957	G	C	119772957	1	2	826	0	1	0	0	0	0	0	0	0	2858	1015	35	4		4	CCDC60	12	119772957	RNA	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	26527933	119772957	14078938	32	69457										
NUPL1	0	genome.wustl.edu	37	chr13	25875893	25875893	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ccatttcgccttgctgacggCgtcgagccctggccagacat	11	15	0	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	13	25875893	25875893	C	T	SNP	NUPL1	ENST00000495460	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NUPL1	HGNC	ENSG00000139496	65	0	0	43	20	31.75	-	-	-	T	25875893	C	T	25875893	1	4	826	0	1	0	0	0	0	0	0	0	10847	783	27	1		1	NUPL1	13	25875893	RNA	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		25875893	89293985	33	69458										
SPTB	0	genome.wustl.edu	37	chr14	65249163	65249163	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	agccgagaggtgctgggtctTctcctttgtggtggcctgca	15	10	2	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	14	65249163	65249163	T	C	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	missense	c.4111	p.K1371E	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	29	0	0	36	4	10	-	-	-	C	65249163	T	C	65249163	3	2	826	1	0	0	0	0	1	0	0	0	15209	1792	62	5	3012	5	SPTB	14	65249163	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09		65249163	42100377	34	69459										
GTF2A1	0	genome.wustl.edu	37	chr14	81651922	81651922	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ttctgtgtcaaagagttcctGtccttcctcatcactcacat	5	13	5	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	14	81651922	81651922	G	C	SNP	GTF2A1	ENST00000553612	human	ensembl	69_37n	-1	known	missense	c.976	p.Q326E	1.000	pfam_TFIIA_asu/bsu,superfamily_TFIIA_b-brl	pfam_TFIIA_asu/bsu,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx	-	no_errors	GTF2A1	HGNC	ENSG00000165417	46	0	0	34	13	27.66	-	-	-	C	81651922	G	C	81651922	3	2	826	1	0	0	0	0	1	0	0	0	6903	1386	48	4	162	4	GTF2A1	14	81651922	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	16402759	81651922	25697618	35	69460										
STARD5	0	genome.wustl.edu	37	chr15	81616333	81616333	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gaccccttcccgcccagctcCtcactcacgccttcccggca	6	23	2	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	15	81616333	81616333	C	G	SNP	STARD5	ENST00000560156	human	ensembl	69_37n	-1	known	missense	c.108	p.E36D	0.002	NULL	NULL	-	no_errors	STARD5	HGNC	ENSG00000172345	49	0	0	29	10	25.64	-	-	-	G	81616333	C	G	81616333	3	3	826	1	0	0	0	0	1	0	0	0	15351	696	24	4		4	STARD5	15	81616333	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		81616333	20915059	36	69461										
GDE1	0	genome.wustl.edu	37	chr16	19516399	19516399	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	taatgctgttattacatcccGatctgtttgtctcatctgca	6	10	3	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	16	19516399	19516399	G	C	SNP	GDE1	ENST00000353258	human	ensembl	69_37n	-1	known	missense	c.652	p.R218G	0.995	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDE1	HGNC	ENSG00000006007	42	0	0	33	8	19.51	-	-	-	C	19516399	G	C	19516399	3	2	826	1	0	0	0	0	1	0	0	0	6361	1057	37	3	351	3	GDE1	16	19516399	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09		19516399	70838354	37	69462										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	41	0	0	35	12	25.53	-	-	-	C	7578190	T	C	7578190	3	2	826	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09		7578190	73617020	38	69463										
PGS1	0	genome.wustl.edu	37	chr17	76392449	76392449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ccctctacctggggacaggtCctttggaacaggagctggta	13	11	1	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	17	76392449	76392449	C	G	SNP	PGS1	ENST00000262764	human	ensembl	69_37n	1	known	missense	c.394	p.P132A	1.000	pirsf_PLipase-D_PtdSer-synthase-type	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157	16	0	0	21	7	25	-	-	-	G	76392449	C	G	76392449	3	3	826	1	0	0	0	0	1	0	0	0	11882	855	30	2	404	2	PGS1	17	76392449	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	68814259	76392449	4802761	39	69464										
SLC25A41	0	genome.wustl.edu	37	chr19	6432160	6432160	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	acttccacaaggcctccttgTtatccacttccaggacttcc	5	16	0	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	6432160	6432160	T	A	SNP	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	missense	c.263	p.N88I	0.083	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	52	0	0	31	4	11.43	-	-	-	A	6432160	T	A	6432160	3	1	826	1	0	0	0	0	1	0	0	0	14595	1725	60	5	873	5	SLC25A41	19	6432160	Missense_Mutation	SNP	T	TCGA-E2-A573-01A-11D-A29N-09		6432160	52696823	40	69465										
ZNF358	0	genome.wustl.edu	37	chr19	7584511	7584511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ccccatctcctctggcctcaCtgccaccccccaggtcttgg	7	21	4	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	7584511	7584511	C	T	SNP	ZNF358	ENST00000394341	human	ensembl	69_37n	1	known	missense	c.383	p.T128I	0.069	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816	15	0	0	15	6	28.57	-	-	-	T	7584511	C	T	7584511	3	4	826	1	0	0	0	0	1	0	0	0	17963	565	20	4	385	4	ZNF358	19	7584511	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	1152351	7584511	51544472	41	69466										
ZNF383	0	genome.wustl.edu	37	chr19	37734543	37734543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gctcggatctcattcgtcatCagggaattcatactaataaa	7	9	4	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	37734543	37734543	C	G	SNP	ZNF383	ENST00000352998	human	ensembl	69_37n	1	known	missense	c.1405	p.Q469E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF383	HGNC	ENSG00000188283	27	0	0	13	10	43.48	-	-	-	G	37734543	C	G	37734543	3	3	826	1	0	0	0	0	1	0	0	0	17970	827	29	2	1419	2	ZNF383	19	37734543	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	30150032	37734543	21394440	42	69467										
MEGF8	0	genome.wustl.edu	37	chr19	42853696	42853696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	atcaggagaaggagacgcggCggctgcagcgccctgggtct	17	11	2	2			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	42853696	42853696	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.2344	p.R782W	0.780	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	74	0	0	49	23	31.94	-	-	-	T	42853696	C	T	42853696	3	4	826	1	0	0	0	0	1	0	0	0	9534	759	27	1	2193	1	MEGF8	19	42853696	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	5119153	42853696	16275287	43	69468										
PSG8	0	genome.wustl.edu	37	chr19	43262237	43262237	+	Frame_Shift_Del	DEL	T	T	-													0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	catagggtcctgcagtgtacTttgtgacacccaatagaaag							TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	43262237	43262237	T	-	DEL	PSG8	ENST00000306511	human	ensembl	69_37n	-1	known	frame_shift_del	c.626	p.K209fs	0.040	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG8	HGNC	ENSG00000124467	173	0	0	130	28	17.72	-	-	-	-	43262237	T	-	43262237	7	5	826	1	0	1	0	1	0	0	0	0	12741	1609	56	0	687	0	PSG8	19	43262237	Frame_Shift_Del	DEL	T	TCGA-E2-A573-01A-11D-A29N-09	408541	43262237	15866746	44	69469										
GLTSCR1	0	genome.wustl.edu	37	chr19	48204725	48204725	+	Frame_Shift_Del	DEL	C	C	-													0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctccacacctgcccaccaagCttgtgatccggcacggcggg							TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	48204725	48204725	C	-	DEL	GLTSCR1	ENST00000396720	human	ensembl	69_37n	1	known	frame_shift_del	c.3736	p.V1247fs	1.000	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169	8	0	0	4	2	33.33	-	-	-	-	48204725	C	-	48204725	7	5	826	1	0	1	0	1	0	0	0	0	6526	797	28	0	3786	0	GLTSCR1	19	48204725	Frame_Shift_Del	DEL	C	TCGA-E2-A573-01A-11D-A29N-09	4942488	48204725	10924258	45	69470										
ZNF132	0	genome.wustl.edu	37	chr19	58946286	58946286	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	ctcttcataagtgcgtccctGtccttgtaccatctaaaggg	8	12	3	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	19	58946286	58946286	G	A	SNP	ZNF132	ENST00000254166	human	ensembl	69_37n	-1	known	silent	c.525	p.D175	0.561	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849	85	0	0	49	33	40.24	-	-	-	A	58946286	G	A	58946286	2	1	826	1	0	0	0	0	0	0	0	1	17818	1368	48	4		4	ZNF132	19	58946286	Silent	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	10741561	58946286	182697	46	69471										
WFDC2	0	genome.wustl.edu	37	chr20	44108623	44108623	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	aggtgaacattaactttcccCagctcggcctctgtcgggac	10	13	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	20	44108623	44108623	C	G	SNP	WFDC2	ENST00000372676	human	ensembl	69_37n	1	known	missense	c.265	p.Q89E	0.001	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core	pfam_Whey_acidic_protein_4-diS_core,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,prints_4-disulphide_core	-	no_errors	WFDC2	HGNC	ENSG00000101443	34	0	0	54	6	10	-	-	-	G	44108623	C	G	44108623	3	3	826	1	0	0	0	0	1	0	0	0	17449	595	21	4	275	4	WFDC2	20	44108623	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09		44108623	18916897	47	69472										
SYNJ1	0	genome.wustl.edu	37	chr21	34072327	34072327	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	cgcagtgatataaactcagtGgaagtaactcggaaaacttc	9	8	1	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	21	34072327	34072327	G	C	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	silent	c.417	p.S139	1.000	pfam_Syja_N	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	23	0	0	29	8	21.62	-	-	-	C	34072327	G	C	34072327	2	2	826	1	0	0	0	0	0	0	0	1	15544	1335	47	4		4	SYNJ1	21	34072327	Silent	SNP	G	TCGA-E2-A573-01A-11D-A29N-09		34072327	14057568	48	69473										
BRWD1	0	genome.wustl.edu	37	chr21	40571052	40571052	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gttacatgcatgatctgaatCatgacttttagagtcttcct	7	8	3	4			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	21	40571052	40571052	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5290	p.D1764H	0.977	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	42	0	0	44	7	13.73	-	-	-	G	40571052	C	G	40571052	3	3	826	1	0	0	0	0	1	0	0	0	1533	826	29	2	1923	2	BRWD1	21	40571052	Missense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	6498725	40571052	7558843	49	69474										
CXorf23	0	genome.wustl.edu	37	chrX	19984272	19984272	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	tgggagtatttttcttcttgTatcctctggtgcctcaactc	8	10	4	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	X	19984272	19984272	T	A	SNP	CXorf23	ENST00000379687	human	ensembl	69_37n	-1	known	silent	c.537	p.I179	0.854	NULL	NULL	-	no_errors	CXorf23	HGNC	ENSG00000173681	60	0	0	86	14	14	-	-	-	A	19984272	T	A	19984272	2	1	826	1	0	0	0	0	0	0	0	1	4134	1628	57	5		5	CXorf23	23	19984272	Silent	SNP	T	TCGA-E2-A573-01A-11D-A29N-09		19984272	135286288	50	69475										
MAGEA11	0	genome.wustl.edu	37	chrX	148797955	148797955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	atttagggaagcctctgtatGcatgcaactgctctttggca	10	9	2	0			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	X	148797955	148797955	G	A	SNP	MAGEA11	ENST00000355220	human	ensembl	69_37n	1	known	missense	c.809	p.C270Y	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	60	0	0	68	20	22.73	-	-	-	A	148797955	G	A	148797955	3	1	826	1	0	0	0	0	1	0	0	0	9232	1319	46	4	836	4	MAGEA11	23	148797955	Missense_Mutation	SNP	G	TCGA-E2-A573-01A-11D-A29N-09	128813683	148797955	6472605	51	69476										
UBL4A	0	genome.wustl.edu	37	chrX	153713698	153713698	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	gtgcctctgctgtgccggctCtcctcttctgagggtgtgga	14	12	4	1			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	X	153713698	153713698	C	A	SNP	UBL4A	ENST00000369653	human	ensembl	69_37n	-1	putative	nonsense	c.514	p.E172*	0.000	NULL	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	UBL4A	HGNC	ENSG00000102178	55	0	0	49	6	10.91	-	-	-	A	153713698	C	A	153713698	4	1	826	1	0	0	0	0	0	1	0	0	16984	928	32	2		2	UBL4A	23	153713698	Nonsense_Mutation	SNP	C	TCGA-E2-A573-01A-11D-A29N-09	4915743	153713698	1556862	52	69477										
DKC1	0	genome.wustl.edu	37	chrX	154005112	154005112	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.884157066679131	1.00470957613815	1.08843537414966	0.932944606413994	1	1	0	aagaagaagaagaagaagaaAgcaaaagaggtagaattggt	13	1	0	8			TCGA-E2-A573-01A-11D-A29N-09	TCGA-E2-A573-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5cf9c046-c6bb-4872-827b-9d1dfe6d28f9	45873e30-7f35-4727-ba6e-3301004bef48	X	154005112	154005112	A	G	SNP	DKC1	ENST00000369550	human	ensembl	69_37n	1	known	silent	c.1515	p.K505	0.963	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	35	0	0	34	7	17.07	-	-	-	G	154005112	A	G	154005112	2	3	826	1	0	0	0	0	0	0	0	1	4578	69	3	5		5	DKC1	23	154005112	Silent	SNP	A	TCGA-E2-A573-01A-11D-A29N-09	291414	154005112	1265448	53	69478										
PRAMEF18	0	genome.wustl.edu	37	chr1	13474983	13474983	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gtgtcattgccgtgaaagcaGaaagtggtgaggttggagca	16	5	1	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	13474983	13474983	G	A	SNP	PRAMEF18	ENST00000376126	human	ensembl	69_37n	-1	known	silent	c.1146	p.F382	0.004	NULL	NULL	-	no_errors	PRAMEF18	HGNC	ENSG00000204491	149	0	0	94	35	27.13	-	-	-	A	13474983	G	A	13474983	2	1	827	1	0	0	0	0	0	0	0	1	12511	933	33	2		2	PRAMEF18	1	13474983	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		13474983	235775638	1	69479										
USP24	0	genome.wustl.edu	37	chr1	55566622	55566622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tggattgtctgtgtcatcatCcactgaaagtaatgactgca	9	8	3	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	55566622	55566622	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.5161	p.D1721N	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	59	0	0	25	27	51.92	-	-	-	T	55566622	C	T	55566622	3	4	827	1	0	0	0	0	1	0	0	0	17152	855	30	2	2801	2	USP24	1	55566622	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	42091639	55566622	193683999	2	69480										
FCRL1	0	genome.wustl.edu	37	chr1	157771340	157771340	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cctcaatgactcctgaggtaAgatgattgcttctggcccca	9	12	2	4			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	157771340	157771340	A	C	SNP	FCRL1	ENST00000368176	human	ensembl	69_37n	-1	known	missense	c.914	p.L305R	0.055	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL1	HGNC	ENSG00000163534	36	0	0	36	13	26.53	-	-	-	C	157771340	A	C	157771340	3	2	827	1	0	0	0	0	1	0	0	0	5840	72	3	5	465	5	FCRL1	1	157771340	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	102204718	157771340	91479281	3	69481										
RGS4	0	genome.wustl.edu	37	chr1	163042526	163042526	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tctttgccttcattcaggatCttagatttcttgccccaatt	5	11	5	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	163042526	163042526	C	T	SNP	RGS4	ENST00000491263	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	RGS4	HGNC	ENSG00000117152	56	0	0	45	7	13.21	-	-	-	T	163042526	C	T	163042526	1	4	827	0	1	0	0	0	0	0	0	0	13391	928	32	2		2	RGS4	1	163042526	RNA	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	5271186	163042526	86208095	4	69482										
CD247	0	genome.wustl.edu	37	chr1	167404209	167404210	+	RNA	INS	-	-	T													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cagcccttcctccggagcccINStcctccagcccttcctccag							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	167404209	167404210	-	T	INS	CD247	ENST00000483825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CD247	HGNC	ENSG00000198821	47	0	0	41	6	12.77	-	-	-	T	167404210	-	T	167404209	6	5	827	0	1	1	1	0	0	0	0	0	3017	696	24	0		0	CD247	1	167404209	RNA	INS	-	TCGA-E2-A574-01A-11D-A29N-09	4361683	167404209	81846412	5	69483										
HLX	0	genome.wustl.edu	37	chr1	221054585	221054585	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cccgccggggtgcacctctcAggcctgcagccctcggccgg	14	19	1	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	1	221054585	221054585	A	C	SNP	HLX	ENST00000366903	human	ensembl	69_37n	1	known	silent	c.642	p.S214	0.003	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630	67	0	0	56	11	16.18	-	-	-	C	221054585	A	C	221054585	2	2	827	1	0	0	0	0	0	0	0	1	7267	175	7	5		5	HLX	1	221054585	Silent	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	53650376	221054585	28196036	6	69484										
DDX1	0	genome.wustl.edu	37	chr2	15761226	15761226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aaaagataacacaagacctgGtgctaatagtccaggtgagt	10	7	0	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	15761226	15761226	G	C	SNP	DDX1	ENST00000233084	human	ensembl	69_37n	1	known	missense	c.1433	p.G478A	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785	34	0	0	39	10	20.41	-	-	-	C	15761226	G	C	15761226	3	2	827	1	0	0	0	0	1	0	0	0	4372	1261	44	4	1503	4	DDX1	2	15761226	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		15761226	227438147	7	69485										
BIRC6	0	genome.wustl.edu	37	chr2	32774504	32774504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tctcgagcttctcagtcagtCctgcctcatcccagccatgt	7	16	4	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	32774504	32774504	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	missense	c.13100	p.S4367F	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	54	0	0	63	14	18.18	-	-	-	T	32774504	C	T	32774504	3	4	827	1	0	0	0	0	1	0	0	0	1443	855	30	2	13358	2	BIRC6	2	32774504	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	17013278	32774504	210424869	8	69486										
MEIS1	0	genome.wustl.edu	37	chr2	66798489	66798489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cccccatcctgctcagctgcGtcatgggccccccatgcata	8	19	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	66798489	66798489	G	A	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	missense	c.1226	p.R409H	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	42	0	0	45	11	19.64	-	-	-	A	66798489	G	A	66798489	3	1	827	1	0	0	0	0	1	0	0	0	9538	1160	40	1		1	MEIS1	2	66798489	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	34023985	66798489	176400884	9	69487										
MPHOSPH10	0	genome.wustl.edu	37	chr2	71371571	71371571	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tcctaagcaaaaaacagcagAagaagaaaatccagaacatg	7	8	0	4			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	71371571	71371571	A	C	SNP	MPHOSPH10	ENST00000244230	human	ensembl	69_37n	1	known	missense	c.1460	p.E487A	1.000	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383	52	0	0	48	17	26.15	-	-	-	C	71371571	A	C	71371571	3	2	827	1	0	0	0	0	1	0	0	0	9797	246	9	5	1490	5	MPHOSPH10	2	71371571	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	4573082	71371571	171827802	10	69488										
FAHD2A	0	genome.wustl.edu	37	chr2	96071355	96071355	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tcacagttctgctgcaggctCagaagtggccctttcaaccc	9	14	4	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	96071355	96071355	C	T	SNP	FAHD2A	ENST00000233379	human	ensembl	69_37n	1	known	nonsense	c.49	p.Q17*	0.962	NULL	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042	117	0	0	187	27	12.62	-	-	-	T	96071355	C	T	96071355	4	4	827	1	0	0	0	0	0	1	0	0	5413	827	29	2	51	2	FAHD2A	2	96071355	Nonsense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	24699784	96071355	147128018	11	69489										
TTN	0	genome.wustl.edu	37	chr2	179623810	179623810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tggataagcttcggcaatttCcagttgataagtgtcttcaa	9	7	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	179623810	179623810	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.10204	p.E3402K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	60	0	0	39	6	13.33	-	-	-	T	179623810	C	T	179623810	3	4	827	1	0	0	0	0	1	0	0	0	16832	864	30	2	101060	2	TTN	2	179623810	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	83552455	179623810	63575563	12	69490										
ZNF142	0	genome.wustl.edu	37	chr2	219507867	219507867	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tcctcgagggggcagccccgGatctggtgagtcctcagagc	15	13	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	219507867	219507867	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	silent	c.3372	p.I1124	0.306	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	66	0	0	83	15	15.31	-	-	-	A	219507867	G	A	219507867	2	1	827	1	0	0	0	0	0	0	0	1	17827	1164	41	2		2	ZNF142	2	219507867	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	39884057	219507867	23691506	13	69491										
ALPP	0	genome.wustl.edu	37	chr2	233243713	233243713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	acccggacttctggaaccgcGaggcagccgaggccctgggt	15	14	1	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	233243713	233243713	G	A	SNP	ALPP	ENST00000392027	human	ensembl	69_37n	1	known	missense	c.109	p.E37K	0.035	superfamily_Alkaline_phosphatase_core	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283	136	1	0.73	90	32	26.23	-	-	-	A	233243713	G	A	233243713	3	1	827	1	0	0	0	0	1	0	0	0	548	1059	37	1	115	1	ALPP	2	233243713	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	13735846	233243713	9955660	14	69492										
SEPT2	0	genome.wustl.edu	37	chr2	242275429	242275429	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ccagattgaggcttcaactgTtgaaattgaagagcgagggg	14	6	1	5			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	2	242275429	242275429	T	C	SNP	SEPT2	ENST00000360051	human	ensembl	69_37n	1	known	missense	c.257	p.V86A	0.998	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385	59	0	0	38	9	19.15	-	-	-	C	242275429	T	C	242275429	3	2	827	1	0	0	0	0	1	0	0	0	14152	1725	60	5	271	5	SEPT2	2	242275429	Missense_Mutation	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	9031716	242275429	923944	15	69493										
PLCL2	0	genome.wustl.edu	37	chr3	17053215	17053215	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aaatccatggaatccctgctGattgtgcagaacaaaggaca	9	9	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	17053215	17053215	G	A	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	1	known	missense	c.1999	p.D667N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	53	0	0	35	7	16.67	-	-	-	A	17053215	G	A	17053215	3	1	827	1	0	0	0	0	1	0	0	0	12114	1290	45	2	2377	2	PLCL2	3	17053215	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		17053215	180969215	16	69494										
RHOA	0	genome.wustl.edu	37	chr3	49449842	49449842	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctacggtgacagtaccccggGtggggcgagggccagtcatg	17	11	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	49449842	49449842	G	C	SNP	RHOA	ENST00000265538	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.284	-	-	-	no_errors	RHOA	HGNC	ENSG00000067560	34	0	0	21	6	22.22	-	-	-	C	49449842	G	C	49449842	1	2	827	0	1	0	0	0	0	0	0	0	13415	1276	44	4		4	RHOA	3	49449842	RNA	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	32396627	49449842	148572588	17	69495										
PPM1M	0	genome.wustl.edu	37	chr3	52282678	52282678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	acaaacgtgtggagaaatcgGatctcaagtacccactgatc	9	10	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	52282678	52282678	G	A	SNP	PPM1M	ENST00000457351	human	ensembl	69_37n	1	known	missense	c.940	p.D314N	0.997	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1M	HGNC	ENSG00000164088	43	0	0	20	13	39.39	-	-	-	A	52282678	G	A	52282678	3	1	827	1	0	0	0	0	1	0	0	0	12422	1174	41	2	475	2	PPM1M	3	52282678	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	2832836	52282678	145739752	18	69496										
ROBO2	0	genome.wustl.edu	37	chr3	77147378	77147378	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gcccagcggatccttattctTcttgcgcatcgtgcacgggc	11	14	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	77147378	77147378	T	G	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.275	p.F92C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	78	0	0	16	16	50	-	-	-	G	77147378	T	G	77147378	3	3	827	1	0	0	0	0	1	0	0	0	13600	1783	62	5	283	5	ROBO2	3	77147378	Missense_Mutation	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	24864700	77147378	120875052	19	69497										
PDIA5	0	genome.wustl.edu	37	chr3	122880757	122880757	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttaccaattatattcgagccCtccgggagggagaccatgaa	10	10	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	122880757	122880757	C	G	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.1510	p.L504V	1.000	NULL	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	44	0	0	19	5	20.83	-	-	-	G	122880757	C	G	122880757	3	3	827	1	0	0	0	0	1	0	0	0	11744	681	24	4	1576	4	PDIA5	3	122880757	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	45733379	122880757	75141673	20	69498										
CPNE4	0	genome.wustl.edu	37	chr3	131268919	131268919	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ataggcttccacaactccttGaattcctgaggtgaaattgg	9	9	0	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	131268919	131268919	G	A	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	nonsense	c.1228	p.Q410*	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	46	0	0	19	5	20.83	-	-	-	A	131268919	G	A	131268919	4	1	827	1	0	0	0	0	0	1	0	0	3844	1299	45	2	511	2	CPNE4	3	131268919	Nonsense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	8388162	131268919	66753511	21	69499										
ZIC1	0	genome.wustl.edu	37	chr3	147128862	147128862	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cgctccgagaatttaaagatCcacaaaaggacgcacacagg	9	11	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	3	147128862	147128862	C	G	SNP	ZIC1	ENST00000282928	human	ensembl	69_37n	1	known	missense	c.963	p.I321M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977	40	0	0	18	14	43.75	-	-	-	G	147128862	C	G	147128862	3	3	827	1	0	0	0	0	1	0	0	0	17774	845	30	2	965	2	ZIC1	3	147128862	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	15859943	147128862	50893568	22	69500										
TMPRSS11A	0	genome.wustl.edu	37	chr4	68797734	68797734	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agtctgactacttggttcttGatataatttttcttccaggc	7	8	3	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	4	68797734	68797734	G	A	SNP	TMPRSS11A	ENST00000334830	human	ensembl	69_37n	-1	known	silent	c.306	p.I102	1.000	pirsf_Pept_S1A_HAT/DESC1,pfam_SEA	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054	76	0	0	35	5	12.5	-	-	-	A	68797734	G	A	68797734	2	1	827	1	0	0	0	0	0	0	0	1	16334	1280	45	2		2	TMPRSS11A	4	68797734	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		68797734	122356542	23	69501										
FBXW7	0	genome.wustl.edu	37	chr4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttcatgaagatgcatacaacGcacagtggaagtatgcccat	9	9	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	4	153249385	153249385	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1393	p.R465C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	65	0	0	8	45	84.91	-	-	-	A	153249385	G	A	153249385	3	1	827	1	0	0	0	0	1	0	0	0	5815	1087	38	1	746	1	FBXW7	4	153249385	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	84451651	153249385	37904891	24	69502										
DDX60	0	genome.wustl.edu	37	chr4	169227774	169227774	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ataagcatctcgaaaatgttGttcgaacatcaatggtggta	9	6	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	4	169227774	169227774	G	C	SNP	DDX60	ENST00000393743	human	ensembl	69_37n	-1	known	missense	c.362	p.T121R	0.759	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	37	0	0	9	16	64	-	-	-	C	169227774	G	C	169227774	3	2	827	1	0	0	0	0	1	0	0	0	4409	1377	48	4	4912	4	DDX60	4	169227774	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	15978389	169227774	21926502	25	69503										
PRDM9	0	genome.wustl.edu	37	chr5	23527492	23527492	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gataagtcacacctcctcagAcaccagaggacacacacagg	8	14	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	23527492	23527492	A	T	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.2295	p.R765S	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	46	0	0	77	10	11.49	-	-	-	T	23527492	A	T	23527492	3	4	827	1	0	0	0	0	1	0	0	0	12544	272	10	5	2333	5	PRDM9	5	23527492	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09		23527492	157387768	26	69504										
DAB2	0	genome.wustl.edu	37	chr5	39377343	39377343	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	attgaagaccaaagatgctgTgttccatggtcctgcctgag	11	9	0	4			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	39377343	39377343	T	C	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	missense	c.1546	p.T516A	0.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	33	0	0	25	10	28.57	-	-	-	C	39377343	T	C	39377343	3	2	827	1	0	0	0	0	1	0	0	0	4250	1696	59	5	778	5	DAB2	5	39377343	Missense_Mutation	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	15849851	39377343	141537917	27	69505										
C5orf44	0	genome.wustl.edu	37	chr5	64925401	64925401	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttctcatcactaagagtaacTggattactgcagaatgacta	7	8	2	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	64925401	64925401	T	A	SNP	C5orf44	ENST00000514404	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.687	-	-	-	no_errors	C5orf44	HGNC	ENSG00000113597	39	0	0	5	14	73.68	-	-	-	A	64925401	T	A	64925401	1	1	827	0	1	0	0	0	0	0	0	0	2324	1595	55	5		5	C5orf44	5	64925401	RNA	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	25548058	64925401	115989859	28	69506										
PCDHGA4	0	genome.wustl.edu	37	chr5	140736344	140736344	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cttcgactatgagcagtttaGagacctgcagctgctgatga	11	9	0	4			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	140736344	140736344	G	C	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	missense	c.1577	p.R526T	0.818	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	43	0	0	28	12	30	-	-	-	C	140736344	G	C	140736344	3	2	827	1	0	0	0	0	1	0	0	0	11629	942	33	2	1579	2	PCDHGA4	5	140736344	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	75810943	140736344	40178916	29	69507										
STK32A	0	genome.wustl.edu	37	chr5	146619205	146619205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggcagattcaaccatgggagCgaacacttcaagaaaaccac	9	11	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	146619205	146619205	C	T	SNP	STK32A	ENST00000397936	human	ensembl	69_37n	1	known	missense	c.8	p.A3V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32A	HGNC	ENSG00000169302	49	0	0	11	19	63.33	-	-	-	T	146619205	C	T	146619205	3	4	827	1	0	0	0	0	1	0	0	0	15388	768	27	1	10	1	STK32A	5	146619205	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	5882861	146619205	34296055	30	69508										
FAT2	0	genome.wustl.edu	37	chr5	150946114	150946114	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttctggggtgtgcccaggtcAtatactgttacattgaggat	12	7	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	150946114	150946114	A	G	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.2379	p.Y793	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	72	0	0	7	43	86	-	-	-	G	150946114	A	G	150946114	2	3	827	1	0	0	0	0	0	0	0	1	5736	224	8	5		5	FAT2	5	150946114	Silent	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	4326909	150946114	29969146	31	69509										
LARP1	0	genome.wustl.edu	37	chr5	154169917	154169917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cagccaaggtggtgagggcaGctgttcctaaacagcgcaaa	13	10	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	154169917	154169917	G	A	SNP	LARP1	ENST00000336314	human	ensembl	69_37n	1	known	missense	c.238	p.A80T	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506	89	0	0	34	18	34.62	-	-	-	A	154169917	G	A	154169917	3	1	827	1	0	0	0	0	1	0	0	0	8682	971	34	4	244	4	LARP1	5	154169917	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	3223803	154169917	26745343	32	69510										
GEMIN5	0	genome.wustl.edu	37	chr5	154316741	154316741	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gtgtgtcccaccaactctccTatgactttaagcaaaaccag	6	13	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	154316741	154316741	T	G	SNP	GEMIN5	ENST00000285873	human	ensembl	69_37n	-1	known	silent	c.171	p.I57	1.000	pfam_WD40_repeat,smart_WD40_repeat	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	84	0	0	32	19	37.25	-	-	-	G	154316741	T	G	154316741	2	3	827	1	0	0	0	0	0	0	0	1	6383	1512	53	5		5	GEMIN5	5	154316741	Silent	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	146824	154316741	26598519	33	69511										
FABP6	0	genome.wustl.edu	37	chr5	159661862	159661862	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gagggcgggaagctggtggtGaatttccccaactatcacca	13	10	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	5	159661862	159661862	G	A	SNP	FABP6	ENST00000393980	human	ensembl	69_37n	1	known	silent	c.426	p.V142	0.000	superfamily_Calycin-like	superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP6	HGNC	ENSG00000170231	92	0	0	52	27	33.75	-	-	-	A	159661862	G	A	159661862	2	1	827	1	0	0	0	0	0	0	0	1	5401	1277	45	2		2	FABP6	5	159661862	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	5345121	159661862	21253398	34	69512										
DDR1	0	genome.wustl.edu	37	chr6	30859162	30859162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctcaccctgccccagatggaCtcctgtcttacaccgcccct	6	20	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	6	30859162	30859162	C	T	SNP	DDR1	ENST00000376575	human	ensembl	69_37n	1	known	missense	c.571	p.L191F	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	47	0	0	55	10	15.38	-	-	-	T	30859162	C	T	30859162	3	4	827	1	0	0	0	0	1	0	0	0	4367	565	20	4	589	4	DDR1	6	30859162	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		30859162	140255905	35	69513										
POU5F1	0	genome.wustl.edu	37	chr6	31133443	31133443	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gaagctaagctgcagagcctCaaagcggcagatggtcgttt	13	9	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	6	31133443	31133443	C	G	SNP	POU5F1	ENST00000259915	human	ensembl	69_37n	-1	known	missense	c.562	p.E188Q	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531	48	0	0	46	7	13.21	-	-	-	G	31133443	C	G	31133443	3	3	827	1	0	0	0	0	1	0	0	0	12354	835	29	2	532	2	POU5F1	6	31133443	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	274281	31133443	139981624	36	69514										
IGF2R	0	genome.wustl.edu	37	chr6	160484554	160484554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gcgaatacacttattacttcCgggtctgtgggaagctttcc	10	10	1	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	6	160484554	160484554	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.3778	p.R1260W	0.997	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	36	0	0	43	6	12.24	-	-	-	T	160484554	C	T	160484554	3	4	827	1	0	0	0	0	1	0	0	0	7630	643	23	1	3884	1	IGF2R	6	160484554	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	129351111	160484554	10630513	37	69515										
KLHL7	0	genome.wustl.edu	37	chr7	23145615	23145615	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gacccctcgcccggcccggcGagccccgggcgtgaaccgag	15	19	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	23145615	23145615	G	A	SNP	KLHL7	ENST00000459661	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.094	-	-	-	no_errors	KLHL7	HGNC	ENSG00000122550	35	0	0	40	6	13.04	-	-	-	A	23145615	G	A	23145615	1	1	827	0	1	0	0	0	0	0	0	0	8447	1073	37	1		1	KLHL7	7	23145615	RNA	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		23145615	135993048	38	69516										
ZNF679	0	genome.wustl.edu	37	chr7	63727200	63727200	+	Frame_Shift_Del	DEL	A	A	-													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agtggtcctcaagtcttgctAatcataagagtatgcatact							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	63727200	63727200	A	-	DEL	ZNF679	ENST00000255746	human	ensembl	69_37n	1	known	frame_shift_del	c.1189	p.N397fs	0.139	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123	48	0	0	15	2	11.76	-	-	-	-	63727200	A	-	63727200	7	5	827	1	0	1	0	1	0	0	0	0	18182	362	13	0	1203	0	ZNF679	7	63727200	Frame_Shift_Del	DEL	A	TCGA-E2-A574-01A-11D-A29N-09	40581585	63727200	95411463	39	69517										
TRRAP	0	genome.wustl.edu	37	chr7	98565273	98565273	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctctatgtgacctgttcgcaGaactgggaagccatggggaa	13	9	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	98565273	98565273	G	A	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.6608	p.R2203K	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	45	0	0	25	13	34.21	-	-	-	A	98565273	G	A	98565273	3	1	827	1	0	0	0	0	1	0	0	0	16697	933	33	2	7579	2	TRRAP	7	98565273	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	34838073	98565273	60573390	40	69518										
POLR2J3	0	genome.wustl.edu	37	chr7	102182031	102182031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggcctagaggctgctccagcGtgaaggtggacagggtgagc	18	9	0	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	102182031	102182031	G	A	SNP	POLR2J3	ENST00000379357	human	ensembl	69_37n	-1	known	missense	c.191	p.T64M	0.968	NULL	NULL	-	no_errors	POLR2J3	HGNC	ENSG00000168255	8	0	0	1	3	75	-	-	-	A	102182031	G	A	102182031	3	1	827	1	0	0	0	0	1	0	0	0	12299	1160	40	1		1	POLR2J3	7	102182031	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	3616758	102182031	56956632	41	69519										
FAM115C	0	genome.wustl.edu	37	chr7	143417625	143417625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agtgactcctatgaggctgcGgtgctctccctggccactgg	13	13	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	143417625	143417625	G	C	SNP	FAM115C	ENST00000518791	human	ensembl	69_37n	1	putative	missense	c.916	p.G306R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM115C	HGNC	ENSG00000170379	32	0	0	1	2	66.67	-	-	-	C	143417625	G	C	143417625	3	2	827	1	0	0	0	0	1	0	0	0	5446	1103	39	3	1614	3	FAM115C	7	143417625	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	41235594	143417625	15721038	42	69520										
SSPO	0	genome.wustl.edu	37	chr7	149477329	149477329	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cactcctgtgcccacagagcGcctgtgccccgggggccagc	13	18	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	7	149477329	149477329	G	A	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	34	0	0	19	16	45.71	-	-	-	A	149477329	G	A	149477329	1	1	827	0	1	0	0	0	0	0	0	0	15280	1087	38	1		1	SSPO	7	149477329	RNA	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	6059704	149477329	9661334	43	69521										
RP1	0	genome.wustl.edu	37	chr8	55540482	55540482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	taccattgactttttaaactCcaaagaaaacacatatactg	3	9	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	8	55540482	55540482	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.4040	p.S1347F	0.032	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	60	0	0	66	10	13.16	-	-	-	T	55540482	C	T	55540482	3	4	827	1	0	0	0	0	1	0	0	0	13618	855	30	2	4050	2	RP1	8	55540482	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		55540482	90823540	44	69522										
VPS13B	0	genome.wustl.edu	37	chr8	100779156	100779156	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agtatcttcagatctttggaGaattgtcttgaacagcagtc	9	7	4	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	8	100779156	100779156	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.7280	p.R2427K	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	50	0	0	50	6	10.71	-	-	-	A	100779156	G	A	100779156	3	1	827	1	0	0	0	0	1	0	0	0	17287	942	33	2	7628	2	VPS13B	8	100779156	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	45238674	100779156	45584866	45	69523										
KANK1	0	genome.wustl.edu	37	chr9	711061	711061	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tctcatcctccaacagtgatGacaacaagcagtgccccaac	6	15	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	9	711061	711061	G	A	SNP	KANK1	ENST00000382297	human	ensembl	69_37n	1	known	missense	c.295	p.D99N	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	33	0	0	29	10	25.64	-	-	-	A	711061	G	A	711061	3	1	827	1	0	0	0	0	1	0	0	0	8030	1290	45	2	301	2	KANK1	9	711061	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		711061	140502370	46	69524										
VLDLR	0	genome.wustl.edu	37	chr9	2650444	2650444	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tgccagcaccacagattaatGatcactctccaaaatatacc	4	13	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	9	2650444	2650444	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	1	known	missense	c.2179	p.D727N	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	48	0	0	29	12	29.27	-	-	-	A	2650444	G	A	2650444	3	1	827	1	0	0	0	0	1	0	0	0	17271	1290	45	2	2237	2	VLDLR	9	2650444	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	1939383	2650444	138562987	47	69525										
DCAF10	0	genome.wustl.edu	37	chr9	37862230	37862230	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cttgtatgaatttaacatctCtagcatgtatccttacttga	5	8	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	9	37862230	37862230	C	G	SNP	DCAF10	ENST00000483167	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF10	HGNC	ENSG00000122741	43	0	0	34	6	15	-	-	-	G	37862230	C	G	37862230	1	3	827	0	1	0	0	0	0	0	0	0	4293	928	32	2		2	DCAF10	9	37862230	RNA	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	35211786	37862230	103351201	48	69526										
TUBB8	0	genome.wustl.edu	37	chr10	93104	93104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gttcatgttgctctcggcctCggtgaattccatctcatcca	8	13	3	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	93104	93104	C	T	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	missense	c.1228	p.E410K	1.000	superfamily_Tub_FtsZ_C,prints_Gamma_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	81	0	0	50	34	40.48	-	-	-	T	93104	C	T	93104	3	4	827	1	0	0	0	0	1	0	0	0	16858	893	31	1	110	1	TUBB8	10	93104	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		93104	135441643	49	69527										
CALML3	0	genome.wustl.edu	37	chr10	5567450	5567450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gccgcggacacggacggagaCggacaggtgaactacgagga	17	10	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	5567450	5567450	C	T	SNP	CALML3	ENST00000315238	human	ensembl	69_37n	1	known	silent	c.402	p.D134	0.849	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML3	HGNC	ENSG00000178363	34	0	0	51	7	12.07	-	-	-	T	5567450	C	T	5567450	2	4	827	1	0	0	0	0	0	0	0	1	2612	535	19	1		1	CALML3	10	5567450	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	5474346	5567450	129967297	50	69528										
CACNB2	0	genome.wustl.edu	37	chr10	18803948	18803948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	acaagaccagtggaaaactgCaggcttgttttggcggttta	12	7	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	18803948	18803948	C	T	SNP	CACNB2	ENST00000352115	human	ensembl	69_37n	1	known	missense	c.710	p.A237V	1.000	superfamily_SH3_domain	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	41	0	0	54	6	10	-	-	-	T	18803948	C	T	18803948	3	4	827	1	0	0	0	0	1	0	0	0	2578	710	25	4	1118	4	CACNB2	10	18803948	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	13236498	18803948	116730799	51	69529										
DDX21	0	genome.wustl.edu	37	chr10	70728850	70728850	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gtggacctgattggtaaaaaGactcagaaaacggcaataac	10	7	1	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	70728850	70728850	G	C	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	1	known	missense	c.1209	p.K403N	1.000	smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	49	0	0	20	8	28.57	-	-	-	C	70728850	G	C	70728850	3	2	827	1	0	0	0	0	1	0	0	0	4380	933	33	2	1235	2	DDX21	10	70728850	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	51924902	70728850	64805897	52	69530										
DNAJB12	0	genome.wustl.edu	37	chr10	74096348	74096348	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	atcatcttccacattccgctCgactgttttgaggctggagc	9	12	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	74096348	74096348	C	G	SNP	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	missense	c.1042	p.E348Q	0.999	pfam_DUF1977_DnaJ-like	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	73	0	0	32	4	11.11	-	-	-	G	74096348	C	G	74096348	3	3	827	1	0	0	0	0	1	0	0	0	4652	893	31	3	195	3	DNAJB12	10	74096348	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	3367498	74096348	61438399	53	69531										
POLR3A	0	genome.wustl.edu	37	chr10	79745033	79745033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aagtcttcagggtcatctggGtgcctggctcaccaatgctc	11	12	5	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	10	79745033	79745033	G	A	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	missense	c.3137	p.T1046I	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	38	0	0	14	14	50	-	-	-	A	79745033	G	A	79745033	3	1	827	1	0	0	0	0	1	0	0	0	12302	1261	44	4	1067	4	POLR3A	10	79745033	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	5648685	79745033	55789714	54	69532										
OR51G2	0	genome.wustl.edu	37	chr11	4936482	4936482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tgtgttggtgagaatggaaaCatagtgcaaggggtggcaga	17	3	0	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	4936482	4936482	C	T	SNP	OR51G2	ENST00000322013	human	ensembl	69_37n	-1	known	missense	c.412	p.V138I	0.649	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR51G2	HGNC	ENSG00000176893	26	0	0	15	10	40	-	-	-	T	4936482	C	T	4936482	3	4	827	1	0	0	0	0	1	0	0	0	11172	478	17	4	536	4	OR51G2	11	4936482	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		4936482	130070034	55	69533										
SAA2	0	genome.wustl.edu	37	chr11	18269511	18269511	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gaaaagaagcttcggctgctGacactcaggaccaaggagca	12	10	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	18269511	18269511	G	T	SNP	SAA2	ENST00000256733	human	ensembl	69_37n	-1	known	silent	c.48	p.V16	0.030	pirsf_Serum_amyloid_A	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	-	no_errors	SAA2	HGNC	ENSG00000134339	109	0	0	81	9	10	-	-	-	T	18269511	G	T	18269511	2	4	827	1	0	0	0	0	0	0	0	1	13885	1277	45	2		2	SAA2	11	18269511	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	13333029	18269511	116737005	56	69534										
OR4S2	0	genome.wustl.edu	37	chr11	55419048	55419048	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agcatcatcctagtttccctGagaaagcagtcagcagaagg	10	10	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	55419048	55419048	G	A	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	silent	c.669	p.L223	0.044	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	116	0	0	74	18	19.57	-	-	-	A	55419048	G	A	55419048	2	1	827	1	0	0	0	0	0	0	0	1	11156	1277	45	2		2	OR4S2	11	55419048	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	37149537	55419048	79587468	57	69535										
OR5L1	0	genome.wustl.edu	37	chr11	55579451	55579451	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tcttaggatccccttctataGatctaatgtgattaaccact	5	10	3	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	55579451	55579451	G	T	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	missense	c.509	p.R170I	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	99	0	0	48	15	23.81	-	-	-	T	55579451	G	T	55579451	3	4	827	1	0	0	0	0	1	0	0	0	11243	942	33	2	511	2	OR5L1	11	55579451	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	160403	55579451	79427065	58	69536										
STX3	0	genome.wustl.edu	37	chr11	59554574	59554574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	agaggaggctaagaaactctAcagtatcattctctctgcac	8	10	4	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	59554574	59554574	A	G	SNP	STX3	ENST00000337979	human	ensembl	69_37n	1	known	missense	c.179	p.Y60C	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX3	HGNC	ENSG00000166900	60	0	0	15	46	75.41	-	-	-	G	59554574	A	G	59554574	3	3	827	1	0	0	0	0	1	0	0	0	15437	391	14	5	189	5	STX3	11	59554574	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	3975123	59554574	75451942	59	69537										
CCDC85B	0	genome.wustl.edu	37	chr11	65658674	65658674	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aacctagcgcttaaggagctCtgcctggcgctgggcgaaga	14	11	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	65658674	65658674	C	T	SNP	CCDC85B	ENST00000312579	human	ensembl	69_37n	1	known	silent	c.420	p.L140	1.000	pfam_DUF2216_coiled-coil	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85B	HGNC	ENSG00000175602	20	0	0	16	7	30.43	-	-	-	T	65658674	C	T	65658674	2	4	827	1	0	0	0	0	0	0	0	1	2887	900	32	2		2	CCDC85B	11	65658674	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	6104100	65658674	69347842	60	69538										
DGAT2	0	genome.wustl.edu	37	chr11	75508201	75508201	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttgcgtccttccctcccctcAggtatctgccctgtcagccg	8	18	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	75508201	75508201	A	T	SNP	DGAT2	ENST00000228027	human	ensembl	69_37n	1	known	splice_site	c.635-2	e6-2	1.000	-	-	-	no_errors	DGAT2	HGNC	ENSG00000062282	51	0	0	49	8	14.04	-	-	-	T	75508201	A	T	75508201	5	4	827	1	0	0	0	0	0	0	1	0	4494	202	7	5	655	5	DGAT2	11	75508201	Splice_Site	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	9849527	75508201	59498315	61	69539										
TMPRSS13	0	genome.wustl.edu	37	chr11	117780640	117780640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cacttgctatccgaggccagCgcccctcccacgatccgccc	8	21	0	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	117780640	117780640	C	T	SNP	TMPRSS13	ENST00000445164	human	ensembl	69_37n	-1	known	silent	c.990	p.A330	0.006	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_TMPRSS13,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_TMPRSS13,prints_Peptidase_S1A,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS13	HGNC	ENSG00000137747	22	0	0	27	15	35.71	-	-	-	T	117780640	C	T	117780640	2	4	827	1	0	0	0	0	0	0	0	1	16340	755	27	1		1	TMPRSS13	11	117780640	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	42272439	117780640	17225876	62	69540										
MLL	0	genome.wustl.edu	37	chr11	118343199	118343199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ccctccaattaaaattgcccGattagagtctacaccgaata	5	12	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	118343199	118343199	G	A	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	missense	c.1325	p.R442Q	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	19	0	0	13	6	31.58	-	-	-	A	118343199	G	A	118343199	3	1	827	1	0	0	0	0	1	0	0	0	9691	1058	37	1	1335	1	MLL	11	118343199	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	562559	118343199	16663317	63	69541										
GRIK4	0	genome.wustl.edu	37	chr11	120852906	120852906	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gctatgttggagtttttatgGactctcagacactcagaagc	10	8	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	11	120852906	120852906	G	A	SNP	GRIK4	ENST00000527524	human	ensembl	69_37n	1	known	nonsense	c.2487	p.W829*	1.000	prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	74	0	0	68	16	19.05	-	-	-	A	120852906	G	A	120852906	4	1	827	1	0	0	0	0	0	1	0	0	6827	1183	41	2	2557	2	GRIK4	11	120852906	Nonsense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	2509707	120852906	14153610	64	69542										
YAF2	0	genome.wustl.edu	37	chr12	42629602	42629602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggcccccatgtgggcctcaaGcctcttttaaactaggccca	9	15	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	12	42629602	42629602	G	T	SNP	YAF2	ENST00000555248	human	ensembl	69_37n	-1	known	missense	c.350	p.A117D	0.992	NULL	pfam_Znf_RanBP2,pfam_Uncharacterised_FAM123,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	YAF2	HGNC	ENSG00000015153	63	0	0	18	33	64.71	-	-	-	T	42629602	G	T	42629602	3	4	827	1	0	0	0	0	1	0	0	0	17562	986	34	4		4	YAF2	12	42629602	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		42629602	91222293	65	69543										
METTL1	0	genome.wustl.edu	37	chr12	58162854	58162854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	attcttcggaagatggctggGaaattcttccctccattacg	9	10	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	12	58162854	58162854	G	A	SNP	METTL1	ENST00000548504	human	ensembl	69_37n	-1	novel	missense	c.349	p.P117S	1.000	pfam_tRNA_(Gua-N-7)_MeTrfase	pfam_tRNA_(Gua-N-7)_MeTrfase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	METTL1	HGNC	ENSG00000037897	54	0	0	31	7	18.42	-	-	-	A	58162854	G	A	58162854	3	1	827	1	0	0	0	0	1	0	0	0	9564	1165	41	2	78	2	METTL1	12	58162854	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	15533252	58162854	75689041	66	69544										
SLC35E3	0	genome.wustl.edu	37	chr12	69158496	69158496	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aacctcagctataacatgttCggacacttcaagttctgcat	6	11	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	12	69158496	69158496	C	T	SNP	SLC35E3	ENST00000398004	human	ensembl	69_37n	1	known	silent	c.768	p.F256	0.997	pfam_DUF250,pfam_DMT	pfam_DUF250,pfam_DMT	-	no_errors	SLC35E3	HGNC	ENSG00000175782	92	0	0	118	16	11.94	-	-	-	T	69158496	C	T	69158496	2	4	827	1	0	0	0	0	0	0	0	1	14675	883	31	1		1	SLC35E3	12	69158496	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	10995642	69158496	64693399	67	69545										
CRYL1	0	genome.wustl.edu	37	chr13	21013828	21013828	+	Frame_Shift_Del	DEL	A	A	-													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctgcttaagatcactcgatcAtcaatgatggaatctaactg							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	13	21013828	21013828	A	-	DEL	CRYL1	ENST00000298248	human	ensembl	69_37n	-1	known	frame_shift_del	c.342	p.D114fs	0.001	pfam_3-OHacyl-CoA_DH_NAD-bd	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	CRYL1	HGNC	ENSG00000165475	24	0	0	19	6	23.08	-	-	-	-	21013828	A	-	21013828	7	5	827	1	0	1	0	1	0	0	0	0	3950	214	8	0	637	0	CRYL1	13	21013828	Frame_Shift_Del	DEL	A	TCGA-E2-A574-01A-11D-A29N-09		21013828	94156050	68	69546										
NDRG2	0	genome.wustl.edu	37	chr14	21486165	21486165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctgtagcccatgccttgcagGaagtacttgaaggcctcggt	12	11	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	14	21486165	21486165	G	A	SNP	NDRG2	ENST00000553593	human	ensembl	69_37n	-1	putative	missense	c.677	p.S226F	1.000	pfam_Ndr	pfam_Ndr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NDRG2	HGNC	ENSG00000165795	68	0	0	49	15	23.44	-	-	-	A	21486165	G	A	21486165	3	1	827	1	0	0	0	0	1	0	0	0	10324	1165	41	2	193	2	NDRG2	14	21486165	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		21486165	85863375	69	69547										
C14orf159	0	genome.wustl.edu	37	chr14	91681803	91681803	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cgcactctacatcctgtactCatgtgctgtccacagtcagt	7	14	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	14	91681803	91681803	C	G	SNP	C14orf159	ENST00000256324	human	ensembl	69_37n	1	known	nonsense	c.1619	p.S540*	0.053	pirsf_UPF0317_mt	pfam_DUF1445,pirsf_UPF0317_mt	-	no_errors	C14orf159	HGNC	ENSG00000133943	89	0	0	43	23	34.85	-	-	-	G	91681803	C	G	91681803	4	3	827	1	0	0	0	0	0	1	0	0	1767	838	29	2	1661	2	C14orf159	14	91681803	Nonsense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	70195638	91681803	15667737	70	69548										
RTL1	0	genome.wustl.edu	37	chr14	101350192	101350192	+	Frame_Shift_Del	DEL	C	C	-													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tggccagcccaagatgggtaCcaggctctggaactcatcga							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	14	101350192	101350192	C	-	DEL	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	frame_shift_del	c.934	p.V312fs	0.931	pfam_Retrotrans_gag	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	37	0	0	11	2	15.38	-	-	-	-	101350192	C	-	101350192	7	5	827	1	0	1	0	1	0	0	0	0	13810	507	18	0	3146	0	RTL1	14	101350192	Frame_Shift_Del	DEL	C	TCGA-E2-A574-01A-11D-A29N-09	9668389	101350192	5999348	71	69549										
INF2	0	genome.wustl.edu	37	chr14	105173281	105173281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggtgtctgcccagctcctgtCggtgctgcagggcctcctgc	14	15	1	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	14	105173281	105173281	C	T	SNP	INF2	ENST00000392634	human	ensembl	69_37n	1	known	missense	c.878	p.S293L	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_WH2_dom,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	19	0	0	7	6	46.15	-	-	-	T	105173281	C	T	105173281	3	4	827	1	0	0	0	0	1	0	0	0	7788	893	31	1	904	1	INF2	14	105173281	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	3823089	105173281	2176259	72	69550										
HERC2	0	genome.wustl.edu	37	chr15	28436380	28436380	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	catctgggaaaatctccaaaCgaatccagtgctttagaaaa	7	9	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	15	28436380	28436380	C	G	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.8462	p.R2821P	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	28	0	0	13	3	18.75	-	-	-	G	28436380	C	G	28436380	3	3	827	1	0	0	0	0	1	0	0	0	7109	536	19	3	6202	3	HERC2	15	28436380	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		28436380	74095012	73	69551										
KBTBD13	0	genome.wustl.edu	37	chr15	65370332	65370332	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gtcaacagcaagggagcgctCttcacggccgtggtgcgcgg	16	12	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	15	65370332	65370332	C	T	SNP	KBTBD13	ENST00000432196	human	ensembl	69_37n	1	known	silent	c.1179	p.L393	0.918	NULL	pfam_Kelch_1,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD13	HGNC	ENSG00000234438	30	0	0	24	11	31.43	-	-	-	T	65370332	C	T	65370332	2	4	827	1	0	0	0	0	0	0	0	1	8046	900	32	2		2	KBTBD13	15	65370332	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	36933952	65370332	37161060	74	69552										
LRRC49	0	genome.wustl.edu	37	chr15	71302313	71302313	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctaagccatttcagtatgcaGaaaataaatggaacagaggt	9	6	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	15	71302313	71302313	G	C	SNP	LRRC49	ENST00000260382	human	ensembl	69_37n	1	known	missense	c.1575	p.Q525H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	47	0	0	27	5	15.62	-	-	-	C	71302313	G	C	71302313	3	2	827	1	0	0	0	0	1	0	0	0	9072	933	33	2	1625	2	LRRC49	15	71302313	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	5931981	71302313	31229079	75	69553										
NLRC3	0	genome.wustl.edu	37	chr16	3602234	3602234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ctgttctgcttcaagggcatCtgccatccgctgggctccca	10	15	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	16	3602234	3602234	C	G	SNP	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	missense	c.2455	p.D819H	0.997	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	67	0	0	31	12	27.91	-	-	-	G	3602234	C	G	3602234	3	3	827	1	0	0	0	0	1	0	0	0	10540	913	32	2	928	2	NLRC3	16	3602234	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		3602234	86752519	76	69554										
SLC12A3	0	genome.wustl.edu	37	chr16	56936397	56936397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cctggaagatctcagatgagGagattacgaagaacagagtc	12	7	1	6			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	16	56936397	56936397	G	A	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	missense	c.2860	p.E954K	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	27	0	0	9	16	64	-	-	-	A	56936397	G	A	56936397	3	1	827	1	0	0	0	0	1	0	0	0	14473	1175	41	2	2954	2	SLC12A3	16	56936397	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	53334163	56936397	33418356	77	69555										
NFATC3	0	genome.wustl.edu	37	chr16	68225648	68225648	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gagagcctaactttgcaaccAttggtctgcaggacatcact	9	11	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	16	68225648	68225648	A	T	SNP	NFATC3	ENST00000346183	human	ensembl	69_37n	1	known	missense	c.3076	p.I1026F	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736	71	0	0	38	11	22.45	-	-	-	T	68225648	A	T	68225648	3	4	827	1	0	0	0	0	1	0	0	0	10436	217	8	5	3110	5	NFATC3	16	68225648	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	11289251	68225648	22129105	78	69556										
KLHL36	0	genome.wustl.edu	37	chr16	84690686	84690686	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aaggaggtggagctgatcggCgcctcctacattgggctcaa	14	10	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	16	84690686	84690686	C	T	SNP	KLHL36	ENST00000564996	human	ensembl	69_37n	1	known	silent	c.273	p.G91	0.995	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686	52	0	0	32	14	30.43	-	-	-	T	84690686	C	T	84690686	2	4	827	1	0	0	0	0	0	0	0	1	8442	755	27	1		1	KLHL36	16	84690686	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	16465038	84690686	5664067	79	69557										
CDT1	0	genome.wustl.edu	37	chr16	88872978	88872978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cgcgcttcaacgtggatgaaGtacccgacatcgagccggcc	12	14	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	16	88872978	88872978	G	T	SNP	CDT1	ENST00000301019	human	ensembl	69_37n	1	known	missense	c.1018	p.V340L	1.000	pfam_CDT1_Gemini-bd-like	pfam_CDT1_Gemini-bd-like	-	no_errors	CDT1	HGNC	ENSG00000167513	36	0	0	31	11	26.19	-	-	-	T	88872978	G	T	88872978	3	4	827	1	0	0	0	0	1	0	0	0	3209	1029	36	4	1044	4	CDT1	16	88872978	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	4182292	88872978	1481775	80	69558										
MYBBP1A	0	genome.wustl.edu	37	chr17	4452659	4452659	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tcagtcaaggcctcctccatCtccaggtgcaggctgtccac	9	16	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	17	4452659	4452659	C	T	SNP	MYBBP1A	ENST00000573116	human	ensembl	69_37n	-1	known	missense	c.1156	p.D386N	1.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYBBP1A	HGNC	ENSG00000132382	32	0	0	27	4	12.9	-	-	-	T	4452659	C	T	4452659	3	4	827	1	0	0	0	0	1	0	0	0	10080	912	32	2	2696	2	MYBBP1A	17	4452659	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		4452659	76742551	81	69559										
LIG3	0	genome.wustl.edu	37	chr17	33310218	33310218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	attccagggaagccatctaaGatcacgtgccacctaccttg	8	13	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	17	33310218	33310218	G	A	SNP	LIG3	ENST00000378526	human	ensembl	69_37n	1	known	missense	c.194	p.R65K	0.995	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	41	0	0	32	6	15.79	-	-	-	A	33310218	G	A	33310218	3	1	827	1	0	0	0	0	1	0	0	0	8837	942	33	2	196	2	LIG3	17	33310218	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	28857559	33310218	47884992	82	69560										
SMURF2	0	genome.wustl.edu	37	chr17	62558993	62558993	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tagtttctgaaccaggtctcGcttgtaccttgggactgtca	10	10	3	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	17	62558993	62558993	G	C	SNP	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	missense	c.1108	p.R370G	1.000	superfamily_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	78	0	0	82	15	15.46	-	-	-	C	62558993	G	C	62558993	3	2	827	1	0	0	0	0	1	0	0	0	14909	1095	38	3	1174	3	SMURF2	17	62558993	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	29248775	62558993	18636217	83	69561										
DNAH17	0	genome.wustl.edu	37	chr17	76565585	76565585	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttgcaggcccttcagcacctCttccgggctcaggaaggttc	11	14	3	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	17	76565585	76565585	C	G	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357Q	0.973	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	62	0	0	41	21	33.87	-	-	-	G	76565585	C	G	76565585	3	3	827	1	0	0	0	0	1	0	0	0	4637	922	32	2	12615	2	DNAH17	17	76565585	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	14006592	76565585	4629625	84	69562										
RPTOR	0	genome.wustl.edu	37	chr17	78933918	78933918	+	Frame_Shift_Del	DEL	C	C	-													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cagctgtgtgacgagtctgtCctgtgattcccaccgctcac							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	17	78933918	78933918	C	-	DEL	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	frame_shift_del	c.3518	p.C1174fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	50	0	0	32	31	49.21	-	-	-	-	78933918	C	-	78933918	7	5	827	1	0	1	0	1	0	0	0	0	13751	855	30	0	3636	0	RPTOR	17	78933918	Frame_Shift_Del	DEL	C	TCGA-E2-A574-01A-11D-A29N-09	2368333	78933918	2261292	85	69563										
EPB41L3	0	genome.wustl.edu	37	chr18	5577341	5577342	+	Frame_Shift_Del	DEL	AG	AG	-													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aattttacctccaaatcctaAgagagactttgagcacagat							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	18	5577341	5577342	AG	-	DEL	EPB41L3	ENST00000582592	human	ensembl	69_37n	-1	putative	frame_shift_del	c.43_42	p.L15fs	0.995:1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	EPB41L3	HGNC	ENSG00000082397	15	0	0	2	2	50	-	-	-	-	5577342	AG	-	5577341	7	5	827	1	0	1	0	1	0	0	0	0	5191	87	3	0		0	EPB41L3	18	5577341	Frame_Shift_Del	DEL	AG	TCGA-E2-A574-01A-11D-A29N-09		5577341	72499907	86	69564										
PNPLA6	0	genome.wustl.edu	37	chr19	7621587	7621587	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gaccacagatatcaccgcctCagccatgcgagtccacaaag	8	15	2	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	7621587	7621587	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	69_37n	1	known	missense	c.3287	p.S1096L	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	79	0	0	129	19	12.84	-	-	-	T	7621587	C	T	7621587	3	4	827	1	0	0	0	0	1	0	0	0	12243	838	29	2	3393	2	PNPLA6	19	7621587	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		7621587	51507396	87	69565										
TIMM44	0	genome.wustl.edu	37	chr19	7998980	7998980	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aggactgggctcacctgggaGagggctctgaaggccgctgt	17	10	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	7998980	7998980	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	silent	c.537	p.L179	0.936	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	50	0	0	39	10	20.41	-	-	-	A	7998980	G	A	7998980	2	1	827	1	0	0	0	0	0	0	0	1	16007	929	33	2		2	TIMM44	19	7998980	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	377393	7998980	51130003	88	69566										
MAST1	0	genome.wustl.edu	37	chr19	12962763	12962763	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cacaggcctatgaacgctctGagagcttggaggtggccttc	13	11	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	12962763	12962763	G	C	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.790	p.E264Q	1.000	pfam_MA_Ser/Thr_Kinase_dom,superfamily_MAST_pre-PK_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	27	0	0	35	7	16.67	-	-	-	C	12962763	G	C	12962763	3	2	827	1	0	0	0	0	1	0	0	0	9395	1291	45	2	820	2	MAST1	19	12962763	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	4963783	12962763	46166220	89	69567										
CC2D1A	0	genome.wustl.edu	37	chr19	14029770	14029770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gctggaggcgctggagcagcGgatggagcggtaccaggtgg	21	8	0	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	14029770	14029770	G	A	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1064	p.R355Q	1.000	smart_DM14	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	86	0	0	145	21	12.65	-	-	-	A	14029770	G	A	14029770	3	1	827	1	0	0	0	0	1	0	0	0	2751	1116	39	1	1102	1	CC2D1A	19	14029770	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	1067007	14029770	45099213	90	69568										
CC2D1A	0	genome.wustl.edu	37	chr19	14030750	14030750	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gcccagaggatgaagaggatGaggtgcctaagaaggtttga	16	5	0	6			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	14030750	14030750	G	A	SNP	CC2D1A	ENST00000318003	human	ensembl	69_37n	1	known	missense	c.1342	p.E448K	0.980	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DM14,smart_C2_Ca-dep	-	no_errors	CC2D1A	HGNC	ENSG00000132024	53	0	0	57	13	18.57	-	-	-	A	14030750	G	A	14030750	3	1	827	1	0	0	0	0	1	0	0	0	2751	1291	45	2	1388	2	CC2D1A	19	14030750	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	980	14030750	45098233	91	69569										
LPHN1	0	genome.wustl.edu	37	chr19	14263405	14263405	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tgtttcctcacagtgtcattCcacatcctccgaattcggct	6	14	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	14263405	14263405	C	G	SNP	LPHN1	ENST00000340736	human	ensembl	69_37n	-1	known	missense	c.3459	p.W1153C	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071	69	0	0	86	13	13.13	-	-	-	G	14263405	C	G	14263405	3	3	827	1	0	0	0	0	1	0	0	0	8981	856	30	2	981	2	LPHN1	19	14263405	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	232655	14263405	44865578	92	69570										
NOTCH3	0	genome.wustl.edu	37	chr19	15296369	15296369	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggatggctcggggggaggcaGagtgggggcaaggagccagg	24	6	0	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	15296369	15296369	G	C	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	silent	c.2073	p.L691	0.970	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	44	0	0	52	8	13.33	-	-	-	C	15296369	G	C	15296369	2	2	827	1	0	0	0	0	0	0	0	1	10622	929	33	2		2	NOTCH3	19	15296369	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	1032964	15296369	43832614	93	69571										
LSR	0	genome.wustl.edu	37	chr19	35749961	35749961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aggcctacgcagagctcatcGtccttggtgagtgggcctgg	15	11	1	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	35749961	35749961	G	A	SNP	LSR	ENST00000361790	human	ensembl	69_37n	1	known	missense	c.712	p.V238I	1.000	smart_Ig_sub	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	32	0	0	14	43	75.44	-	-	-	A	35749961	G	A	35749961	3	1	827	1	0	0	0	0	1	0	0	0	9130	1145	40	1	722	1	LSR	19	35749961	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	20453592	35749961	23379022	94	69572										
ZNF146	0	genome.wustl.edu	37	chr19	36727858	36727858	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ggccagaagaagtacctcatAaaacatcagaacattcacac	6	11	3	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	36727858	36727858	A	T	SNP	ZNF146	ENST00000443387	human	ensembl	69_37n	1	known	silent	c.516	p.I172	0.955	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF146	HGNC	ENSG00000167635	40	0	0	29	7	18.42	-	-	-	T	36727858	A	T	36727858	2	4	827	1	0	0	0	0	0	0	0	1	17829	352	13	5		5	ZNF146	19	36727858	Silent	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	977897	36727858	22401125	95	69573										
ZNF527	0	genome.wustl.edu	37	chr19	37880273	37880273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	aattcacacaggagagaaacCcttcaaatgtagtgaatgtg	9	7	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	37880273	37880273	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	1	known	missense	c.1322	p.P441L	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	29	0	0	46	18	28.12	-	-	-	T	37880273	C	T	37880273	3	4	827	1	0	0	0	0	1	0	0	0	18064	623	22	4	1336	4	ZNF527	19	37880273	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	1152415	37880273	21248710	96	69574										
MAP4K1	0	genome.wustl.edu	37	chr19	39098647	39098647	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gacctggggctgctgctcctGaggtctcgaggaggctgtag	17	10	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	39098647	39098647	G	C	SNP	MAP4K1	ENST00000591921	human	ensembl	69_37n	-1	novel	nonsense	c.125	p.S42*	0.033	NULL	pfam_Citron,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K1	HGNC	ENSG00000104814	74	0	0	99	16	13.91	-	-	-	C	39098647	G	C	39098647	4	2	827	1	0	0	0	0	0	1	0	0	9330	1277	45	2	1543	2	MAP4K1	19	39098647	Nonsense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	1218374	39098647	20030336	97	69575										
NFKBIB	0	genome.wustl.edu	37	chr19	39395737	39395737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cggccggcactgagtacatgGacctgcagaatgacctaggc	13	12	0	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	39395737	39395737	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	69_37n	1	known	missense	c.262	p.D88N	0.998	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825	81	0	0	115	13	10.16	-	-	-	A	39395737	G	A	39395737	3	1	827	1	0	0	0	0	1	0	0	0	10450	1174	41	2	268	2	NFKBIB	19	39395737	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	297090	39395737	19733246	98	69576										
NUMBL	0	genome.wustl.edu	37	chr19	41173889	41173889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tgctgttgctgctgctgctgCtgctgctgttgctgttgctg	14	10	0	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	41173889	41173889	C	T	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	silent	c.1314	p.Q438	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	24	0	0	30	19	38.78	-	-	-	T	41173889	C	T	41173889	2	4	827	1	0	0	0	0	0	0	0	1	10825	796	28	4		4	NUMBL	19	41173889	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	1778152	41173889	17955094	99	69577										
PSG6	0	genome.wustl.edu	37	chr19	43414865	43414865	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttggttttggacagctgcaaCctgtgagtcatagggaggtt	14	6	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	19	43414865	43414865	C	G	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.573	p.R191S	0.002	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	157	0	0	190	55	22.45	-	-	-	G	43414865	C	G	43414865	3	3	827	1	0	0	0	0	1	0	0	0	12739	506	18	4	789	4	PSG6	19	43414865	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	2240976	43414865	15714118	100	69578										
SNAI1	0	genome.wustl.edu	37	chr20	48604479	48604479	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tccaacctgcgggcccacctCcagacccactcagatgtcaa	7	18	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	20	48604479	48604479	C	G	SNP	SNAI1	ENST00000244050	human	ensembl	69_37n	1	known	silent	c.681	p.L227	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI1	HGNC	ENSG00000124216	41	0	0	68	12	15	-	-	-	G	48604479	C	G	48604479	2	3	827	1	0	0	0	0	0	0	0	1	14915	842	30	2		2	SNAI1	20	48604479	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		48604479	14421041	101	69579										
PRIC285	0	genome.wustl.edu	37	chr20	62202569	62202569	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gtgggctcctgccccgctccAagctcctgggagcctctggc	13	17	1	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	20	62202569	62202569	A	C	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	32	0	0	67	9	11.84	-	-	-	C	62202569	A	C	62202569	1	2	827	0	1	0	0	0	0	0	0	0	12566	145	5	5		5	PRIC285	20	62202569	RNA	SNP	A	TCGA-E2-A574-01A-11D-A29N-09	13598090	62202569	822951	102	69580										
BRWD1	0	genome.wustl.edu	37	chr21	40597087	40597087	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gacttaacactgttccaaacCaccaagcatcatcaataata	3	12	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	21	40597087	40597087	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.3245	p.W1082S	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	36	0	0	15	3	16.67	-	-	-	G	40597087	C	G	40597087	3	3	827	1	0	0	0	0	1	0	0	0	1533	595	21	4	4016	4	BRWD1	21	40597087	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09		40597087	7532808	103	69581										
ITGB2	0	genome.wustl.edu	37	chr21	46311893	46311893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gatgcactctgtggccgtgaCcttcacctggaaggtgatct	12	11	3	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	21	46311893	46311893	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1243	p.V415I	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	37	0	0	26	11	29.73	-	-	-	T	46311893	C	T	46311893	3	4	827	1	0	0	0	0	1	0	0	0	7948	507	18	4	1090	4	ITGB2	21	46311893	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	5714806	46311893	1818002	104	69582										
MED15	0	genome.wustl.edu	37	chr22	20907442	20907442	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	tttcatatagataacaagaaAtctcaagcttccgtcagtgg	7	8	3	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	20907442	20907442	A	G	SNP	MED15	ENST00000423862	human	ensembl	69_37n	1	novel	missense	c.121	p.I41V	1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MED15	HGNC	ENSG00000099917	66	0	0	37	7	15.91	-	-	-	G	20907442	A	G	20907442	3	3	827	1	0	0	0	0	1	0	0	0	9504	98	4	5	233	5	MED15	22	20907442	Missense_Mutation	SNP	A	TCGA-E2-A574-01A-11D-A29N-09		20907442	30397124	105	69583										
MN1	0	genome.wustl.edu	37	chr22	28194924	28194925	+	In_Frame_Ins	INS	-	-	TGT													0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gttgctgttgctgctgctgcINStgctgctgttgctgctgctg							TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	28194924	28194925	-	TGT	INS	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	in_frame_ins	c.1608_1607	p.540in_frame_insQ	0.997:0.998	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	50	0	0	30	7	18.92	-	-	-	TGT	28194925	-	TGT	28194924	7	5	827	1	0	1	1	0	0	0	0	0	9745	796	28	0	2362	0	MN1	22	28194924	In_Frame_Ins	INS	-	TCGA-E2-A574-01A-11D-A29N-09	7287482	28194924	23109642	106	69584										
DEPDC5	0	genome.wustl.edu	37	chr22	32289734	32289734	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	accgcagcagtactcttcgaGatggtgagaaccttcatgca	10	11	2	2			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	32289734	32289734	G	T	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	1	known	missense	c.4134	p.E1378D	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	34	0	0	2	16	88.89	-	-	-	T	32289734	G	T	32289734	3	4	827	1	0	0	0	0	1	0	0	0	4478	933	33	2	4341	2	DEPDC5	22	32289734	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	4094810	32289734	19014832	107	69585										
SH3BP1	0	genome.wustl.edu	37	chr22	38046694	38046694	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	gctccggctccagctccagcTccggccccagccttggcttc	10	20	0	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	38046694	38046694	T	G	SNP	SH3BP1	ENST00000357436	human	ensembl	69_37n	1	known	silent	c.1560	p.A520	0.004	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	76	0	0	10	44	81.48	-	-	-	G	38046694	T	G	38046694	2	3	827	1	0	0	0	0	0	0	0	1	14332	1538	54	5		5	SH3BP1	22	38046694	Silent	SNP	T	TCGA-E2-A574-01A-11D-A29N-09	5756960	38046694	13257872	108	69586										
MLC1	0	genome.wustl.edu	37	chr22	50500033	50500033	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	cactgggccatttgcaccacGacggctctccaggctttctc	9	16	2	0			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	50500033	50500033	G	A	SNP	MLC1	ENST00000311597	human	ensembl	69_37n	-1	known	silent	c.1113	p.V371	0.008	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	55	0	0	9	31	77.5	-	-	-	A	50500033	G	A	50500033	2	1	827	1	0	0	0	0	0	0	0	1	9683	1045	37	1		1	MLC1	22	50500033	Silent	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	12453339	50500033	804533	109	69587										
MOV10L1	0	genome.wustl.edu	37	chr22	50591516	50591516	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	accggtcccacgaggccctgCtgatgctgccctcacggctg	12	17	1	1			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	22	50591516	50591516	C	A	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	missense	c.2935	p.L979M	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	94	0	0	53	22	29.33	-	-	-	A	50591516	C	A	50591516	3	1	827	1	0	0	0	0	1	0	0	0	9791	796	28	4	3074	4	MOV10L1	22	50591516	Missense_Mutation	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	91483	50591516	713050	110	69588										
TAB3	0	genome.wustl.edu	37	chrX	30877660	30877660	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ttcagggaaacgttgtcgaaGatcatggagaacctgaatat	11	6	2	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	X	30877660	30877660	G	C	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	missense	c.46	p.L16V	1.000	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	61	0	0	33	8	19.51	-	-	-	C	30877660	G	C	30877660	3	2	827	1	0	0	0	0	1	0	0	0	15589	942	33	2	2120	2	TAB3	23	30877660	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09		30877660	124392900	111	69589										
FOXR2	0	genome.wustl.edu	37	chrX	55650935	55650935	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	taaggatgaagataatgcaaGacctcgctcttgcctttgga	10	8	1	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	X	55650935	55650935	G	C	SNP	FOXR2	ENST00000339140	human	ensembl	69_37n	1	known	missense	c.791	p.R264T	0.002	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR2	HGNC	ENSG00000189299	26	0	0	15	11	42.31	-	-	-	C	55650935	G	C	55650935	3	2	827	1	0	0	0	0	1	0	0	0	6080	942	33	2	793	2	FOXR2	23	55650935	Missense_Mutation	SNP	G	TCGA-E2-A574-01A-11D-A29N-09	24773275	55650935	99619625	112	69590										
VSIG1	0	genome.wustl.edu	37	chrX	107320311	107320311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.283185840707965	32	7.07997909578139e-07	2.73806336456939	3.55092592592593	2.36728395061728	0.230084699295529	0.835766845696152	20	ataaacccaaggggagaaagCgaagcaatgccaagagaaga	12	7	0	3			TCGA-E2-A574-01A-11D-A29N-09	TCGA-E2-A574-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2afd1023-472c-4d73-a303-980c4e755a5d	dfbfaff6-e80b-4c47-8539-5ef2723f6ed9	X	107320311	107320311	C	T	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	1	known	silent	c.972	p.S324	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	43	0	0	6	15	71.43	-	-	-	T	107320311	C	T	107320311	2	4	827	1	0	0	0	0	0	0	0	1	17319	767	27	1		1	VSIG1	23	107320311	Silent	SNP	C	TCGA-E2-A574-01A-11D-A29N-09	51669376	107320311	47950249	113	69591										
CELA2A	0	genome.wustl.edu	37	chr1	15788123	15788123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	agggtccctgatagccaacaGctgggtcctgacggctgccc	13	14	0	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	1	15788123	15788123	G	T	SNP	CELA2A	ENST00000359621	human	ensembl	69_37n	1	known	missense	c.197	p.S66I	0.250	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2A	HGNC	ENSG00000142615	43	0	0	34	4	10.53	-	-	-	T	15788123	G	T	15788123	3	4	828	1	0	0	0	0	1	0	0	0	3240	971	34	4	207	4	CELA2A	1	15788123	Missense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09		15788123	233462498	1	69592										
MATN1	0	genome.wustl.edu	37	chr1	31191659	31191659	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	cgtaatcgacgtgttcgtccTgcggctcgctggcgatctgc	13	13	1	0			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	1	31191659	31191659	T	A	SNP	MATN1	ENST00000373765	human	ensembl	69_37n	-1	known	missense	c.587	p.Q196L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510	13	0	0	6	4	40	-	-	-	A	31191659	T	A	31191659	3	1	828	1	0	0	0	0	1	0	0	0	9404	1580	55	5	927	5	MATN1	1	31191659	Missense_Mutation	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09	15403536	31191659	218058962	2	69593										
ADCY10	0	genome.wustl.edu	37	chr1	167793766	167793766	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	gcagagggactgataatgtcGgttgggattctggagcagtg	17	5	1	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	1	167793766	167793766	G	T	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	silent	c.4000	p.R1334	0.002	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	45	0	0	35	25	41.67	-	-	-	T	167793766	G	T	167793766	2	4	828	1	0	0	0	0	0	0	0	1	293	1124	39	3		3	ADCY10	1	167793766	Silent	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09	136602107	167793766	81456855	3	69594										
OR5K2	0	genome.wustl.edu	37	chr3	98216606	98216606	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	ctgagctgaagactctgctgTttgtggtgttctttgccatc	11	9	2	3			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	3	98216606	98216606	T	G	SNP	OR5K2	ENST00000427338	human	ensembl	69_37n	1	known	missense	c.82	p.F28V	0.142	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861	94	0	0	77	47	37.9	-	-	-	G	98216606	T	G	98216606	3	3	828	1	0	0	0	0	1	0	0	0	11240	1725	60	5	84	5	OR5K2	3	98216606	Missense_Mutation	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09		98216606	99805824	4	69595										
COL6A5	0	genome.wustl.edu	37	chr3	130116598	130116598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	agaggcacaggtgagcttggCgtttaaggtgaacagtgacc	15	7	0	4			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	3	130116598	130116598	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3740	p.A1247V	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	55	0	0	29	22	43.14	-	-	-	T	130116598	C	T	130116598	3	4	828	1	0	0	0	0	1	0	0	0	3732	768	27	1	3770	1	COL6A5	3	130116598	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09	31899992	130116598	67905832	5	69596										
EHHADH	0	genome.wustl.edu	37	chr3	184911173	184911173	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	ccaagacagaggttatcatcTtgtttgcagttgctagctgg	11	8	2	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	3	184911173	184911173	T	G	SNP	EHHADH	ENST00000231887	human	ensembl	69_37n	-1	known	missense	c.1013	p.K338T	0.000	pfam_3-OHacyl-CoA_DH_NAD-bd	pfam_Crotonase_core,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790	75	0	0	55	19	25.33	-	-	-	G	184911173	T	G	184911173	3	3	828	1	0	0	0	0	1	0	0	0	5017	1609	56	5	1162	5	EHHADH	3	184911173	Missense_Mutation	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09	54794575	184911173	13111257	6	69597										
MTTP	0	genome.wustl.edu	37	chr4	100510904	100510904	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	ttaagctctggaaccaccaaTgaggtacttaccaatattaa	6	9	1	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	4	100510904	100510904	T	C	SNP	MTTP	ENST00000265517	human	ensembl	69_37n	1	known	silent	c.498	p.N166	0.792	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	50	0	0	35	21	37.5	-	-	-	C	100510904	T	C	100510904	2	2	828	1	0	0	0	0	0	0	0	1	10036	1461	51	5		5	MTTP	4	100510904	Silent	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09		100510904	90643372	7	69598										
TTC29	0	genome.wustl.edu	37	chr4	147858746	147858746	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	cctttaaaggttgtacttacGcagcaacttcctcttttgat	6	10	1	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	4	147858746	147858746	G	C	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	missense	c.254	p.A85G	0.999	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	61	0	0	55	15	21.43	-	-	-	C	147858746	G	C	147858746	3	2	828	1	0	0	0	0	1	0	0	0	16793	1101	38	3	1291	3	TTC29	4	147858746	Missense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09	47347842	147858746	43295530	8	69599										
DOCK2	0	genome.wustl.edu	37	chr5	169445994	169445994	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	aatctgcttcatcccaggcaTggtaggacctatattagaga	9	9	2	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	5	169445994	169445994	T	A	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	1	known	missense	c.3263	p.M1088K	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	33	0	0	25	7	21.88	-	-	-	A	169445994	T	A	169445994	3	1	828	1	0	0	0	0	1	0	0	0	4722	1464	51	5	3393	5	DOCK2	5	169445994	Missense_Mutation	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09		169445994	11469266	9	69600										
AKD1	0	genome.wustl.edu	37	chr6	109993173	109993173	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	ctccaacattagctttatgaCaagttcatctggaatgcttt	6	9	2	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	6	109993173	109993173	C	A	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.280	p.V94F	0.783	pfam_Adenylate_kin,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	54	0	0	58	18	23.68	-	-	-	A	109993173	C	A	109993173	3	1	828	1	0	0	0	0	1	0	0	0	460	478	17	4	5615	4	AKD1	6	109993173	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09		109993173	61121894	10	69601										
MCM7	0	genome.wustl.edu	37	chr7	99696737	99696737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	agacacgagtgacgattccaCgcacagttaccaacttcccc	7	15	0	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	7	99696737	99696737	C	T	SNP	MCM7	ENST00000303887	human	ensembl	69_37n	-1	known	missense	c.491	p.R164H	1.000	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,prints_MCM_7	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	52	0	0	44	38	46.34	-	-	-	T	99696737	C	T	99696737	3	4	828	1	0	0	0	0	1	0	0	0	9463	536	19	1	1712	1	MCM7	7	99696737	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09		99696737	59441926	11	69602										
CUX1	0	genome.wustl.edu	37	chr7	101740745	101740745	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	aacttagggaaactctggaaGaatacaacaaggaatttgct	9	6	1	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	7	101740745	101740745	G	T	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	nonsense	c.403	p.E135*	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	38	0	0	57	29	33.72	-	-	-	T	101740745	G	T	101740745	4	4	828	1	0	0	0	0	0	1	0	0	4095	943	33	2	455	2	CUX1	7	101740745	Nonsense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09	2044008	101740745	57397918	12	69603										
FREM1	0	genome.wustl.edu	37	chr9	14816829	14816829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	gccatcggtgacctccaagaGtaggtcatcctgaagaactt	10	11	1	4			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	9	14816829	14816829	G	T	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.2590	p.L864I	0.001	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	26	0	0	29	9	23.68	-	-	-	T	14816829	G	T	14816829	3	4	828	1	0	0	0	0	1	0	0	0	6093	1029	36	4	4094	4	FREM1	9	14816829	Missense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09		14816829	126396602	13	69604										
GATA3	0	genome.wustl.edu	37	chr10	8115955	8115956	+	Frame_Shift_Ins	INS	-	-	C													0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	ctgtcctttggaccacaccaINScccctccagcatggtcaccg							TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	10	8115955	8115956	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1304_1305	p.S437fs	1.000:0.921	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	27	0	0	40	11	21.57	-	-	-	C	8115956	-	C	8115955	7	5	828	1	0	1	1	0	0	0	0	0	6305	159	6	0	1322	0	GATA3	10	8115955	Frame_Shift_Ins	INS	-	TCGA-E9-A1N3-01A-12D-A159-09		8115955	127418792	14	69605										
OR5T1	0	genome.wustl.edu	37	chr11	56043116	56043116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	catataaacaatagctaaaaTgtcagggttgccttcagata	7	7	2	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	11	56043116	56043116	T	C	SNP	OR5T1	ENST00000313033	human	ensembl	69_37n	1	known	missense	c.2	p.M1T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698	42	0	0	24	17	41.46	-	-	-	C	56043116	T	C	56043116	3	2	828	1	0	0	0	0	1	0	0	0	11254	1478	51	5	4	5	OR5T1	11	56043116	Missense_Mutation	SNP	T	TCGA-E9-A1N3-01A-12D-A159-09		56043116	78963400	15	69606										
SLC22A10	0	genome.wustl.edu	37	chr11	63072159	63072159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	tattgttatttatctgtaggGcaagagcttcaggaatagat	10	4	2	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	11	63072159	63072159	G	A	SNP	SLC22A10	ENST00000332793	human	ensembl	69_37n	1	known	missense	c.1396	p.A466T	0.024	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	60	0	0	63	10	13.7	-	-	-	A	63072159	G	A	63072159	3	1	828	1	0	0	0	0	1	0	0	0	14530	1217	42	4	1430	4	SLC22A10	11	63072159	Missense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09	7029043	63072159	71934357	16	69607										
NAV3	0	genome.wustl.edu	37	chr12	78569113	78569113	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	catcagaagacagcattcctCtgaaagtgtttctagtatca	7	9	4	3			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	12	78569113	78569113	C	A	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.5009	p.S1670Y	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	59	0	0	27	21	43.75	-	-	-	A	78569113	C	A	78569113	3	1	828	1	0	0	0	0	1	0	0	0	10257	913	32	2	5107	2	NAV3	12	78569113	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09		78569113	55282782	17	69608										
APAF1	0	genome.wustl.edu	37	chr12	99074131	99074131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	agtgctttgttgtgcattctCtacagatgacagatttatag	9	6	1	3			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	12	99074131	99074131	C	G	SNP	APAF1	ENST00000551964	human	ensembl	69_37n	1	known	missense	c.1997	p.S666C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	58	0	0	49	20	28.99	-	-	-	G	99074131	C	G	99074131	3	3	828	1	0	0	0	0	1	0	0	0	756	913	32	2	2047	2	APAF1	12	99074131	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09	20505018	99074131	34777764	18	69609										
PITPNC1	0	genome.wustl.edu	37	chr17	65688873	65688873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	acgcacccgaatttctgtccGttcccaaagatcggccccgg	9	16	1	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	17	65688873	65688873	G	A	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	1	known	missense	c.868	p.V290I	0.983	NULL	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	52	0	0	55	11	16.67	-	-	-	A	65688873	G	A	65688873	3	1	828	1	0	0	0	0	1	0	0	0	12023	1145	40	1	1025	1	PITPNC1	17	65688873	Missense_Mutation	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09		65688873	15506337	19	69610										
ZNF14	0	genome.wustl.edu	37	chr19	19823822	19823822	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	agtttccttgttgatattaaCatttggcatctggctagtgg	10	6	1	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	19	19823822	19823822	C	A	SNP	ZNF14	ENST00000344099	human	ensembl	69_37n	-1	known	missense	c.268	p.V90F	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	34	0	0	57	7	10.94	-	-	-	A	19823822	C	A	19823822	3	1	828	1	0	0	0	0	1	0	0	0	17824	478	17	4	1664	4	ZNF14	19	19823822	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09		19823822	39305161	20	69611										
SUPT5H	0	genome.wustl.edu	37	chr19	39964082	39964082	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	gcaccccacactacggctcaCagacgcccctgcatgatggc	9	18	1	2			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	19	39964082	39964082	C	T	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	1	known	nonsense	c.2413	p.Q805*	0.999	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	17	0	0	10	18	64.29	-	-	-	T	39964082	C	T	39964082	4	4	828	1	0	0	0	0	0	1	0	0	15490	479	17	4	2507	4	SUPT5H	19	39964082	Nonsense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09	20140260	39964082	19164901	21	69612										
LILRB4	0	genome.wustl.edu	37	chr19	55176608	55176608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	tgaggaccagcccctcatgcCtacagggtcagtcccccaca	9	17	2	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	19	55176608	55176608	C	T	SNP	LILRB4	ENST00000270452	human	ensembl	69_37n	1	known	missense	c.734	p.P245L	0.000	NULL	pfam_Immunoglobulin,pfscan_Ig-like	-	no_errors	LILRB4	HGNC	ENSG00000186818	32	0	0	20	22	52.38	-	-	-	T	55176608	C	T	55176608	3	4	828	1	0	0	0	0	1	0	0	0	8848	681	24	4	756	4	LILRB4	19	55176608	Missense_Mutation	SNP	C	TCGA-E9-A1N3-01A-12D-A159-09	15212526	55176608	3952375	22	69613										
SLC2A4RG	0	genome.wustl.edu	37	chr20	62373244	62373244	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	cctggcctggagccctggaaGgaggccctggtgcggccccc	16	16	0	0			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	20	62373244	62373244	G	A	SNP	SLC2A4RG	ENST00000266077	human	ensembl	69_37n	1	known	silent	c.414	p.K138	0.932	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SLC2A4RG	HGNC	ENSG00000125520	10	0	0	5	8	61.54	-	-	-	A	62373244	G	A	62373244	2	1	828	1	0	0	0	0	0	0	0	1	14636	991	35	4		4	SLC2A4RG	20	62373244	Silent	SNP	G	TCGA-E9-A1N3-01A-12D-A159-09		62373244	652276	23	69614										
UMODL1	0	genome.wustl.edu	37	chr21	43510515	43510515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	gtcaccaggaagctccagccAcgtctccacggaagctgaac	10	15	2	1			TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	21	43510515	43510515	A	T	SNP	UMODL1	ENST00000408989	human	ensembl	69_37n	1	known	missense	c.898	p.T300S	0.000	smart_EGF-like_Ca-bd	pfam_Zona_pellucida_Endoglin/CD105,pfam_SEA,pfam_EGF-like_Ca-bd,pfam_EMI_domain,pfam_Whey_acidic_protein_4-diS_core,superfamily_Fibronectin_type3,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_EGF-like_Ca-bd,smart_Fibronectin_type3,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMODL1	HGNC	ENSG00000177398	32	0	0	57	14	19.44	-	-	-	T	43510515	A	T	43510515	3	4	828	1	0	0	0	0	1	0	0	0	17077	159	6	5	920	5	UMODL1	21	43510515	Missense_Mutation	SNP	A	TCGA-E9-A1N3-01A-12D-A159-09		43510515	4619380	24	69615										
EP300	0	genome.wustl.edu	37	chr22	41527610	41527611	+	Frame_Shift_Ins	INS	-	-	G													0.04	1	0.98084598061592	0.753623188405797	3.39130434782609	0	1	1	0	gcagcctgggcagtctccccINSaaggcatgcggcccatgagc							TCGA-E9-A1N3-01A-12D-A159-09	TCGA-E9-A1N3-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6c3891a9-baa9-4309-9974-d82fd5f97417	dbbc85cd-811a-4d6a-b515-3ea1f6f01ea5	22	41527610	41527611	-	G	INS	EP300	ENST00000263253	human	ensembl	69_37n	1	known	frame_shift_ins	c.1501_1502	p.Q501fs	1.000:1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	39	0	0	21	6	22.22	-	-	-	G	41527611	-	G	41527610	7	5	828	1	0	1	1	0	0	0	0	0	5185	595	21	0	1523	0	EP300	22	41527610	Frame_Shift_Ins	INS	-	TCGA-E9-A1N3-01A-12D-A159-09		41527610	9776956	25	69616										
MDM4	0	genome.wustl.edu	37	chr1	204507346	204507346	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ccttctttcagcaaagtgcaGaggaaagttccacttccaga	8	11	2	2			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	1	204507346	204507346	G	A	SNP	MDM4	ENST00000367182	human	ensembl	69_37n	1	known	missense	c.421	p.E141K	0.105	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625	154	0	0	52	29	35.8	-	-	-	A	204507346	G	A	204507346	3	1	829	1	0	0	0	0	1	0	0	0	9485	943	33	2	443	2	MDM4	1	204507346	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		204507346	44743275	1	69617										
ZNF35	0	genome.wustl.edu	37	chr3	44701222	44701222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	tgaatgtgggaaggccttcaCatgtagctcatacctactta	9	9	2	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	3	44701222	44701222	C	T	SNP	ZNF35	ENST00000396056	human	ensembl	69_37n	1	known	missense	c.1367	p.T456I	0.798	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981	79	0	0	36	13	26.53	-	-	-	T	44701222	C	T	44701222	3	4	829	1	0	0	0	0	1	0	0	0	17958	478	17	4	1377	4	ZNF35	3	44701222	Missense_Mutation	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09		44701222	153321208	2	69618										
FXR1	0	genome.wustl.edu	37	chr3	180680687	180680687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	gtaggaagtagaacagctaaGaatggaacgcctacagattg	12	6	0	3			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	3	180680687	180680687	G	C	SNP	FXR1	ENST00000357559	human	ensembl	69_37n	1	known	missense	c.1094	p.R365T	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,superfamily_NA-bd_OB-fold-like,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416	164	0	0	71	37	34.26	-	-	-	C	180680687	G	C	180680687	3	2	829	1	0	0	0	0	1	0	0	0	6164	942	33	2	1140	2	FXR1	3	180680687	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	135979465	180680687	17341743	3	69619										
C4orf34	0	genome.wustl.edu	37	chr4	39553738	39553738	+	Nonstop_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	aactattttcacttcccataTcacaaagttagtccacagga	4	11	2	0			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	4	39553738	39553738	T	A	SNP	C4orf34	ENST00000511809	human	ensembl	69_37n	-1	novel	nonstop	c.165	p.*55C	0.178	NULL	pfam_Uncharacterised_CD034/YQF4	-	no_errors	C4orf34	HGNC	ENSG00000163683	241	0	0	102	56	35.44	-	-	-	A	39553738	T	A	39553738	4	1	829	1	0	0	0	0	0	0	0	0	2285	1450	50	5		5	C4orf34	4	39553738	Nonstop_Mutation	SNP	T	TCGA-E9-A1N4-01A-11D-A14K-09		39553738	151600538	4	69620										
MAP3K1	0	genome.wustl.edu	37	chr5	56178577	56178577	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	gcaaagagaagatggaagctGaagaagaagaagctttagca	13	4	0	6			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	5	56178577	56178577	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.3550	p.E1184*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	111	0	0	41	19	31.67	-	-	-	T	56178577	G	T	56178577	4	4	829	1	0	0	0	0	0	1	0	0	9314	1291	45	2	3604	2	MAP3K1	5	56178577	Nonsense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		56178577	124736683	5	69621										
POU3F2	0	genome.wustl.edu	37	chr6	99283256	99283256	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ccgggacccggggcatggcgGagcgcggcggctgcagcgca	20	14	0	0			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	6	99283256	99283256	G	C	SNP	POU3F2	ENST00000328345	human	ensembl	69_37n	1	known	silent	c.507	p.R169	1.000	pirsf_Transcription_factor_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486	19	0	0	4	4	50	-	-	-	C	99283256	G	C	99283256	2	2	829	1	0	0	0	0	0	0	0	1	12348	1161	41	2		2	POU3F2	6	99283256	Silent	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		99283256	71831811	6	69622										
YWHAG	0	genome.wustl.edu	37	chr7	75959501	75959501	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	caacgttcttgtaggccacaGacagaaggtttcgttcctca	9	11	2	2			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	7	75959501	75959501	G	C	SNP	YWHAG	ENST00000307630	human	ensembl	69_37n	-1	known	missense	c.137	p.S46C	0.998	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027	75	0	0	30	11	26.19	-	-	-	C	75959501	G	C	75959501	3	2	829	1	0	0	0	0	1	0	0	0	17600	942	33	2	610	2	YWHAG	7	75959501	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		75959501	83179162	7	69623										
EMID2	0	genome.wustl.edu	37	chr7	101091052	101091052	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	tgctgccctggcttcaccggGagcaactgtgatgagggtaa	14	10	1	2			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	7	101091052	101091052	G	T	SNP	EMID2	ENST00000313669	human	ensembl	69_37n	1	known	silent	c.369	p.G123	0.992	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	EMID2	HGNC	ENSG00000160963	58	0	0	16	10	38.46	-	-	-	T	101091052	G	T	101091052	2	4	829	1	0	0	0	0	0	0	0	1	5129	1161	41	2		2	EMID2	7	101091052	Silent	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	25131551	101091052	58047611	8	69624										
LSM1	0	genome.wustl.edu	37	chr8	38033806	38033806	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	tactcactgtcaatgtcctcGatgaggctggcggtgccagg	13	11	2	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	8	38033806	38033806	G	A	SNP	LSM1	ENST00000311351	human	ensembl	69_37n	-1	known	silent	c.33	p.I11	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM1	HGNC	ENSG00000175324	40	0	0	17	10	37.04	-	-	-	A	38033806	G	A	38033806	2	1	829	1	0	0	0	0	0	0	0	1	9116	1048	37	1		1	LSM1	8	38033806	Silent	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		38033806	108330216	9	69625										
NCOA2	0	genome.wustl.edu	37	chr8	71078828	71078828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ttcttctttgatggactttgGttgagagacagcgaagcact	11	7	2	3			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	8	71078828	71078828	G	T	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	missense	c.703	p.P235T	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	118	0	0	41	16	28.07	-	-	-	T	71078828	G	T	71078828	3	4	829	1	0	0	0	0	1	0	0	0	10301	1261	44	4	3759	4	NCOA2	8	71078828	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	33045022	71078828	75285194	10	69626										
ITGA8	0	genome.wustl.edu	37	chr10	15614253	15614253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	taggatttggttggcactgcAgaggtcccagagtttgaata	13	6	0	3			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	10	15614253	15614253	A	G	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	missense	c.2594	p.L865P	0.676	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943	85	0	0	42	18	30	-	-	-	G	15614253	A	G	15614253	3	3	829	1	0	0	0	0	1	0	0	0	7936	188	7	5	621	5	ITGA8	10	15614253	Missense_Mutation	SNP	A	TCGA-E9-A1N4-01A-11D-A14K-09		15614253	119920494	11	69627										
KCNA5	0	genome.wustl.edu	37	chr12	5153951	5153951	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ggacgaggccatggagcgctTccgcgaggatgagggcttca	17	10	1	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	12	5153951	5153951	T	A	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.638	p.F213Y	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	41	0	0	15	26	63.41	-	-	-	A	5153951	T	A	5153951	3	1	829	1	0	0	0	0	1	0	0	0	8060	1783	62	5	640	5	KCNA5	12	5153951	Missense_Mutation	SNP	T	TCGA-E9-A1N4-01A-11D-A14K-09		5153951	128697944	12	69628										
TMPO	0	genome.wustl.edu	37	chr12	98926744	98926744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	gtcctcctttgggcagtaccGaactacaggcagctaagaaa	10	11	0	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	12	98926744	98926744	G	A	SNP	TMPO	ENST00000266732	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	1.000	NULL	pfam_LAP2alpha,pfam_Thymopoietin_LEM,pfam_LEM,superfamily_LEM-like_dom,smart_LEM,pfscan_LEM,pfscan_Thymopoietin_LEM	-	no_errors	TMPO	HGNC	ENSG00000120802	61	0	0	17	11	39.29	-	-	-	A	98926744	G	A	98926744	3	1	829	1	0	0	0	0	1	0	0	0	16332	1059	37	1	723	1	TMPO	12	98926744	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	93772793	98926744	34925151	13	69629										
TXNRD1	0	genome.wustl.edu	37	chr12	104682625	104682625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ggtgcctgcggggccgggacGgaagccccgcccccggcgca	18	17	0	0			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	12	104682625	104682625	G	A	SNP	TXNRD1	ENST00000378070	human	ensembl	69_37n	1	known	missense	c.68	p.R23Q	0.346	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	17	0	0	14	5	26.32	-	-	-	A	104682625	G	A	104682625	3	1	829	1	0	0	0	0	1	0	0	0	16904	1131	39	1		1	TXNRD1	12	104682625	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	5755881	104682625	29169270	14	69630										
FREM2	0	genome.wustl.edu	37	chr13	39453040	39453040	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	atgccaaactagcagtggatGaccctgaagccattctctta	8	11	1	2			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	13	39453040	39453040	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.8932	p.D2978N	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	192	0	0	71	35	33.02	-	-	-	A	39453040	G	A	39453040	3	1	829	1	0	0	0	0	1	0	0	0	6094	1290	45	2	9022	2	FREM2	13	39453040	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09		39453040	75716838	15	69631										
DHRS12	0	genome.wustl.edu	37	chr13	52345423	52345423	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	gagctgcagagagcccaggtGagctgcctgaggtcatggag	17	9	1	3			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	13	52345423	52345423	G	A	SNP	DHRS12	ENST00000280056	human	ensembl	69_37n	-1	known	silent	c.768	p.L256	0.001	NULL	pfam_DH_sc/Rdtase_SDR	-	no_errors	DHRS12	HGNC	ENSG00000102796	101	0	0	31	24	43.64	-	-	-	A	52345423	G	A	52345423	2	1	829	1	0	0	0	0	0	0	0	1	4524	1277	45	2		2	DHRS12	13	52345423	Silent	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	12892383	52345423	62824455	16	69632										
MAPKBP1	0	genome.wustl.edu	37	chr15	42111445	42111445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ttccttgtctcggactcaggCaccaggccccatcaatgctg	9	15	3	0			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	15	42111445	42111445	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	1	known	missense	c.2311	p.H771Y	0.971	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	114	0	0	38	15	28.3	-	-	-	T	42111445	C	T	42111445	3	4	829	1	0	0	0	0	1	0	0	0	9363	724	25	4	2393	4	MAPKBP1	15	42111445	Missense_Mutation	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09		42111445	60419947	17	69633										
CALR3	0	genome.wustl.edu	37	chr19	16593495	16593495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	aagaggccacacacctggtaCgggggcttctggagcatcgg	15	11	1	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	19	16593495	16593495	C	T	SNP	CALR3	ENST00000269881	human	ensembl	69_37n	-1	known	silent	c.780	p.P260	0.010	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000141979	86	0	0	43	20	31.75	-	-	-	T	16593495	C	T	16593495	2	4	829	1	0	0	0	0	0	0	0	1	2618	523	19	1		1	CALR3	19	16593495	Silent	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09		16593495	42535488	18	69634										
KIR2DL4	0	genome.wustl.edu	37	chr19	55325455	55325455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	aatgctgagcccagagcgttGtctcctgcccatgagcacca	10	14	1	3			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	19	55325455	55325455	G	A	SNP	KIR2DL4	ENST00000396284	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	22	0	0	11	5	31.25	-	-	-	A	55325455	G	A	55325455	2	1	829	1	0	0	0	0	0	0	0	1	8371	1368	48	4		4	KIR2DL4	19	55325455	Silent	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	38731960	55325455	3803528	19	69635										
CHAF1B	0	genome.wustl.edu	37	chr21	37771831	37771831	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	ttcttcagggtgctgcgagtAtacagtatacagaagaagcg	12	7	2	2			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	21	37771831	37771831	A	G	SNP	CHAF1B	ENST00000314103	human	ensembl	69_37n	1	known	silent	c.591	p.V197	0.210	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	-	no_errors	CHAF1B	HGNC	ENSG00000159259	168	0	0	84	40	32.26	-	-	-	G	37771831	A	G	37771831	2	3	829	1	0	0	0	0	0	0	0	1	3341	436	16	5		5	CHAF1B	21	37771831	Silent	SNP	A	TCGA-E9-A1N4-01A-11D-A14K-09		37771831	10358064	20	69636										
MXRA5	0	genome.wustl.edu	37	chrX	3235331	3235331	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	cagctgcaccgtcctgcgcgCggagcctaccaggttggcgg	15	15	0	0			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	X	3235331	3235331	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.6391	p.A2131T	0.851	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	34	0	0	19	6	23.08	-	-	-	T	3235331	C	T	3235331	3	4	829	1	0	0	0	0	1	0	0	0	10075	768	27	1	2103	1	MXRA5	23	3235331	Missense_Mutation	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09		3235331	152035229	21	69637										
DCAF8L1	0	genome.wustl.edu	37	chrX	27999081	27999081	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	actgatcatggttggtgccaCcgcatcgtggacacatccga	11	12	1	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	X	27999081	27999081	C	A	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.371	p.G124V	0.077	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	112	0	0	45	25	35.71	-	-	-	A	27999081	C	A	27999081	3	1	829	1	0	0	0	0	1	0	0	0	4309	507	18	4	1435	4	DCAF8L1	23	27999081	Missense_Mutation	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09	24763750	27999081	127271479	22	69638										
KIF4A	0	genome.wustl.edu	37	chrX	69510363	69510363	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	tggcgctgcgttgtcgccctCtggtccccaaagagattagc	12	13	1	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	X	69510363	69510363	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	silent	c.55	p.L19	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	131	0	0	57	21	26.92	-	-	-	T	69510363	C	T	69510363	2	4	829	1	0	0	0	0	0	0	0	1	8355	912	32	2		2	KIF4A	23	69510363	Silent	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09	41511282	69510363	85760197	23	69639										
MED12	0	genome.wustl.edu	37	chrX	70356252	70356252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	agtggaccggcgagtggctcGaggagaggagcagcagcggt	20	8	0	1			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	X	70356252	70356252	G	A	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	missense	c.5147	p.R1716Q	0.420	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	36	0	0	23	15	33.33	-	-	-	A	70356252	G	A	70356252	3	1	829	1	0	0	0	0	1	0	0	0	9499	1058	37	1	5293	1	MED12	23	70356252	Missense_Mutation	SNP	G	TCGA-E9-A1N4-01A-11D-A14K-09	845889	70356252	84914308	24	69640										
F8	0	genome.wustl.edu	37	chrX	154159944	154159944	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.24	6	0.0536296619557019	2.98442906574394	5.63725490196078	2.41596638655462	0.592074592074592	1	0	gagttgtggcaccccagaatCcatagacctggagatgagga	13	9	0	4			TCGA-E9-A1N4-01A-11D-A14K-09	TCGA-E9-A1N4-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3784a48-47a7-4587-91dd-5b8873a24ca9	a7a3cf1b-eb9b-468a-b613-55bb99265df8	X	154159944	154159944	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	nonsense	c.2121	p.W707*	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	74	0	0	36	11	23.4	-	-	-	T	154159944	C	T	154159944	4	4	829	1	0	0	0	0	0	1	0	0	5387	856	30	2	5014	2	F8	23	154159944	Nonsense_Mutation	SNP	C	TCGA-E9-A1N4-01A-11D-A14K-09	83803692	154159944	1110616	25	69641										
NBPF1	0	genome.wustl.edu	37	chr1	16905718	16905718	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ctgctggttggccaggaagcAggccagttgagttacaaaac	13	9	0	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	16905718	16905718	A	C	SNP	NBPF1	ENST00000430580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	27	0	0	28	7	20	-	-	-	C	16905718	A	C	16905718	1	2	830	0	1	0	0	0	0	0	0	0	10264	188	7	5		5	NBPF1	1	16905718	RNA	SNP	A	TCGA-E9-A1N5-01A-11D-A14G-09		16905718	232344903	1	69642										
PTPRC	0	genome.wustl.edu	37	chr1	198697545	198697545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	gccctgcttgttgttctctaCaaaatctatgatctacataa	5	10	3	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	198697545	198697545	C	T	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	silent	c.1797	p.Y599	0.998	pirsf_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	76	0	0	42	20	32.26	-	-	-	T	198697545	C	T	198697545	2	4	830	1	0	0	0	0	0	0	0	1	12880	489	17	4		4	PTPRC	1	198697545	Silent	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	181791827	198697545	50553076	2	69643										
TMCC2	0	genome.wustl.edu	37	chr1	205210727	205210727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tcgggaaagggagcaccagaCgtctcaggattcccagcagc	13	12	1	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	205210727	205210727	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	69_37n	1	known	missense	c.302	p.T101M	0.261	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069	13	0	0	16	7	30.43	-	-	-	T	205210727	C	T	205210727	3	4	830	1	0	0	0	0	1	0	0	0	16088	536	19	1	308	1	TMCC2	1	205210727	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	6513182	205210727	44039894	3	69644										
WNT7A	0	genome.wustl.edu	37	chr3	13896211	13896211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ctctttgtcgcagccacagtCgctcaggttgccctgggtac	11	14	2	0			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	13896211	13896211	C	T	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	missense	c.388	p.D130N	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	29	0	0	14	5	26.32	-	-	-	T	13896211	C	T	13896211	3	4	830	1	0	0	0	0	1	0	0	0	17491	884	31	1	669	1	WNT7A	3	13896211	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09		13896211	184126219	4	69645										
NAALADL2	0	genome.wustl.edu	37	chr3	175520852	175520852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ttcaatacttatagaggcttGggaacactgcaaaccccttg	8	10	1	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	175520852	175520852	G	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.2249	p.W750L	0.513	superfamily_TFR-like_dimer_dom	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	46	0	0	37	9	19.15	-	-	-	T	175520852	G	T	175520852	3	4	830	1	0	0	0	0	1	0	0	0	10202	1357	47	4	2303	4	NAALADL2	3	175520852	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09	161624641	175520852	22501578	5	69646										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0	21	45	68.18	-	-	-	A	178936082	G	A	178936082	3	1	830	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09	3415230	178936082	19086348	6	69647										
GBA3	0	genome.wustl.edu	37	chr4	22749308	22749308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tggtgtctctatcactttttGcggtctggttggaaccagca	11	9	3	0			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	4	22749308	22749308	G	A	SNP	GBA3	ENST00000508166	human	ensembl	69_37n	1	known	missense	c.676	p.A226T	0.000	NULL	NULL	-	pseudogene	GBA3	HGNC	ENSG00000249948	42	0	0	28	20	41.67	-	-	-	A	22749308	G	A	22749308	3	1	830	1	0	0	0	0	1	0	0	0	6318	1319	46	4	686	4	GBA3	4	22749308	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09		22749308	168404968	7	69648										
FGG	0	genome.wustl.edu	37	chr4	155533321	155533321	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tgataagtagacaggaaatcTgcaatgccacaggtagttgg	12	6	1	2			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	4	155533321	155533321	T	A	SNP	FGG	ENST00000443553	human	ensembl	69_37n	-1	putative	splice_site	c.1-2	e1-2	1.000	-	-	-	no_stop_codon	FGG	HGNC	ENSG00000171557	48	0	0	72	11	13.25	-	-	-	A	155533321	T	A	155533321	5	1	830	1	0	0	0	0	0	0	1	0	5916	1567	55	5	1252	5	FGG	4	155533321	Splice_Site	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09	132784013	155533321	35620955	8	69649										
HEXB	0	genome.wustl.edu	37	chr5	73985157	73985157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tttatttctcaaacagatatCatggctatatttttggtttc	5	6	2	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	5	73985157	73985157	C	T	SNP	HEXB	ENST00000261416	human	ensembl	69_37n	1	known	missense	c.304	p.H102Y	0.168	pfam_Glyco_hydro_20b	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXB	HGNC	ENSG00000049860	66	0	0	47	7	12.96	-	-	-	T	73985157	C	T	73985157	3	4	830	1	0	0	0	0	1	0	0	0	7125	826	29	2	310	2	HEXB	5	73985157	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09		73985157	106930103	9	69650										
UBR2	0	genome.wustl.edu	37	chr6	42585066	42585066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	atctgtccagttcttcaccgCacctactctggtgagtagtg	9	12	4	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	6	42585066	42585066	C	T	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	1	known	missense	c.1271	p.A424V	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	55	0	0	38	19	33.33	-	-	-	T	42585066	C	T	42585066	3	4	830	1	0	0	0	0	1	0	0	0	16999	710	25	4	1313	4	UBR2	6	42585066	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09		42585066	128530001	10	69651										
ZNF804B	0	genome.wustl.edu	37	chr7	88963249	88963249	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tgagacactagaagattcaaTtggcattcatgcttcattct	7	8	4	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	88963249	88963249	T	C	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.953	p.I318T	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	20	0	0	16	4	20	-	-	-	C	88963249	T	C	88963249	3	2	830	1	0	0	0	0	1	0	0	0	18264	1493	52	5	967	5	ZNF804B	7	88963249	Missense_Mutation	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09		88963249	70175414	11	69652										
OR2A5	0	genome.wustl.edu	37	chr7	143747698	143747698	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ctctcacacctggccatcatTgatatttcgtatgcttccaa	5	13	2	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	143747698	143747698	T	C	SNP	OR2A5	ENST00000408906	human	ensembl	69_37n	1	known	silent	c.204	p.I68	0.003	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2A5	HGNC	ENSG00000221836	39	0	0	41	18	30.51	-	-	-	C	143747698	T	C	143747698	2	2	830	1	0	0	0	0	0	0	0	1	11054	1800	63	5		5	OR2A5	7	143747698	Silent	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09	54784449	143747698	15390965	12	69653										
CDCA2	0	genome.wustl.edu	37	chr8	25341520	25341520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	aagcacctgcctttctaaatAtgaggaagaggaagagagtt	11	6	1	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	8	25341520	25341520	A	G	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	1	known	missense	c.1159	p.M387V	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	40	0	0	29	18	38.3	-	-	-	G	25341520	A	G	25341520	3	3	830	1	0	0	0	0	1	0	0	0	3115	449	16	5	1193	5	CDCA2	8	25341520	Missense_Mutation	SNP	A	TCGA-E9-A1N5-01A-11D-A14G-09		25341520	121022502	13	69654										
IFITM3	0	genome.wustl.edu	37	chr11	319891	319891	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	gacgatgagcagaatggtcaTgaggatgcccagaatcaggg	15	7	2	4			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	319891	319891	T	A	SNP	IFITM3	ENST00000399808	human	ensembl	69_37n	-1	known	missense	c.349	p.M117L	0.000	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM3	HGNC	ENSG00000142089	39	0	0	13	8	38.1	-	-	-	A	319891	T	A	319891	3	1	830	1	0	0	0	0	1	0	0	0	7582	1464	51	5	56	5	IFITM3	11	319891	Missense_Mutation	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09		319891	134686625	14	69655										
EHBP1L1	0	genome.wustl.edu	37	chr11	65350230	65350230	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	gatagaagatacaatacagtCtgagatgctggggacccagg	13	7	1	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65350230	65350230	C	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	missense	c.2087	p.S696C	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	27	0	0	23	29	55.77	-	-	-	G	65350230	C	G	65350230	3	3	830	1	0	0	0	0	1	0	0	0	5011	913	32	2	2121	2	EHBP1L1	11	65350230	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	65030339	65350230	69656286	15	69656			1	115		3	3	1629	C		1.161062e-06
EHBP1L1	0	genome.wustl.edu	37	chr11	65351789	65351789	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	accactggctaccgtggcgtCcgcatcaccaacttcaccac	7	18	2	0			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65351789	65351789	C	G	SNP	EHBP1L1	ENST00000533465	human	ensembl	69_37n	1	putative	missense	c.319	p.P107A	0.989	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EHBP1L1	HGNC	ENSG00000173442	20	0	0	5	13	72.22	-	-	-	G	65351789	C	G	65351789	3	3	830	1	0	0	0	0	1	0	0	0	5011	842	30	2	3209	2	EHBP1L1	11	65351789	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	1559	65351789	69654727	16	69657			1	115		3	3	1629	C		1.161062e-06
EHBP1L1	0	genome.wustl.edu	37	chr11	65351858	65351858	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	gccatcctgcaccgattctaCccagacaagatgtgagctgc	9	14	1	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65351858	65351858	C	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	69_37n	1	known	nonsense	c.3240	p.Y1080*	0.999	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	21	0	0	8	11	57.89	-	-	-	G	65351858	C	G	65351858	4	3	830	1	0	0	0	0	0	1	0	0	5011	518	18	4	3278	4	EHBP1L1	11	65351858	Nonsense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	69	65351858	69654658	17	69658			1	115		3	3	1629	C		1.161062e-06
SLCO1C1	0	genome.wustl.edu	37	chr12	20905442	20905442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tacaacccaactactggccaGgcaaggaaactcaactttag	7	12	1	0			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	12	20905442	20905442	G	A	SNP	SLCO1C1	ENST00000266509	human	ensembl	69_37n	1	known	missense	c.2119	p.G707S	1.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	38	0	0	40	14	25.45	-	-	-	A	20905442	G	A	20905442	3	1	830	1	0	0	0	0	1	0	0	0	14814	1000	35	4	2276	4	SLCO1C1	12	20905442	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09		20905442	112946453	18	69659										
CACNB3	0	genome.wustl.edu	37	chr12	49220772	49220772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	cccaggagtcatttgatgtgAttctggatgagaaccagctg	12	8	2	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	12	49220772	49220772	A	G	SNP	CACNB3	ENST00000301050	human	ensembl	69_37n	1	known	missense	c.1006	p.I336V	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	29	0	0	19	5	20.83	-	-	-	G	49220772	A	G	49220772	3	3	830	1	0	0	0	0	1	0	0	0	2579	333	12	5	1052	5	CACNB3	12	49220772	Missense_Mutation	SNP	A	TCGA-E9-A1N5-01A-11D-A14G-09	28315330	49220772	84631123	19	69660										
HERC1	0	genome.wustl.edu	37	chr15	64041947	64041947	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	gtctcaaagcagtagcttctGaagaaccacaacctagacaa	7	11	2	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	15	64041947	64041947	G	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.1946	p.S649L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	36	0	0	25	7	21.21	-	-	-	A	64041947	G	A	64041947	3	1	830	1	0	0	0	0	1	0	0	0	7108	1294	45	2	12919	2	HERC1	15	64041947	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09		64041947	38489445	20	69661										
MEF2A	0	genome.wustl.edu	37	chr15	100247006	100247006	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tcgtgtctgtgacaaccccaAgcttgcctccgcaaggactt	9	14	1	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	15	100247006	100247006	A	G	SNP	MEF2A	ENST00000338042	human	ensembl	69_37n	1	known	missense	c.958	p.S320G	0.999	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	37	0	0	26	19	42.22	-	-	-	G	100247006	A	G	100247006	3	3	830	1	0	0	0	0	1	0	0	0	9526	72	3	5	1127	5	MEF2A	15	100247006	Missense_Mutation	SNP	A	TCGA-E9-A1N5-01A-11D-A14G-09	36205059	100247006	2284386	21	69662										
C16orf48	0	genome.wustl.edu	37	chr16	67697208	67697208	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ggcagcagtaccagctcacgCagcagctggctctggcctac	12	15	2	0			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	16	67697208	67697208	C	A	SNP	C16orf48	ENST00000243878	human	ensembl	69_37n	-1	known	silent	c.897	p.L299	0.699	NULL	NULL	-	no_errors	C16orf48	HGNC	ENSG00000124074	19	0	0	6	4	40	-	-	-	A	67697208	C	A	67697208	2	1	830	1	0	0	0	0	0	0	0	1	1829	697	25	4		4	C16orf48	16	67697208	Silent	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09		67697208	22657545	22	69663										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	47	0	0	23	17	42.5	-	-	-	C	7578271	T	C	7578271	3	2	830	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09		7578271	73616939	23	69664										
ZBTB7C	0	genome.wustl.edu	37	chr18	45566387	45566387	+	Silent	SNP	C	C	T													0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ttgtggcagatggggcactgCtgagaggccttgggcttcag							TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	18	45566387	45566387	C	T	SNP	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	silent	c.1092	p.Q364	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	18	0	0	7	6	46.15	-	-	-	T	45566387	C	T	45566387	2	4	830	1	0	0	0	0	0	0	0	1	17651	796	28	4		4	ZBTB7C	18	45566387	Silent	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09		45566387	32510861	24	69665	502	2								
ZBTB7C	0	genome.wustl.edu	37	chr18	45566388	45566388	+	Missense_Mutation	SNP	T	T	G													0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tgtggcagatggggcactgcTgagaggccttgggcttcagc							TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	18	45566388	45566388	T	G	SNP	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	missense	c.1091	p.Q364P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	17	0	0	7	6	46.15	-	-	-	G	45566388	T	G	45566388	3	3	830	1	0	0	0	0	1	0	0	0	17651	1580	55	5	776	5	ZBTB7C	18	45566388	Missense_Mutation	SNP	T	TCGA-E9-A1N5-01A-11D-A14G-09	1	45566388	32510860	25	69666	502	2								
DNMT3B	0	genome.wustl.edu	37	chr20	31376692	31376692	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	tttggaataggggacctcgtGtggggaaagatcaagggctt	16	5	1	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	31376692	31376692	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	69_37n	1	known	silent	c.687	p.V229	0.998	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3B	HGNC	ENSG00000088305	48	0	0	29	20	40.82	-	-	-	A	31376692	G	A	31376692	2	1	830	1	0	0	0	0	0	0	0	1	4712	1364	48	4		4	DNMT3B	20	31376692	Silent	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09		31376692	31648828	26	69667										
SAMHD1	0	genome.wustl.edu	37	chr20	35533890	35533890	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	ggatcagtagagtataaaatCtccagaaaaatgttatctgc	8	6	3	2			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	35533890	35533890	C	G	SNP	SAMHD1	ENST00000262878	human	ensembl	69_37n	-1	known	missense	c.1287	p.E429D	1.000	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347	48	0	0	76	9	10.59	-	-	-	G	35533890	C	G	35533890	3	3	830	1	0	0	0	0	1	0	0	0	13914	912	32	2	613	2	SAMHD1	20	35533890	Missense_Mutation	SNP	C	TCGA-E9-A1N5-01A-11D-A14G-09	4157198	35533890	27491630	27	69668										
LSM14B	0	genome.wustl.edu	37	chr20	60701300	60701300	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	agctgaacaagcgccctgatGaaggcgtgcggggtgatggg	18	8	0	4			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	60701300	60701300	G	A	SNP	LSM14B	ENST00000400318	human	ensembl	69_37n	1	known	missense	c.310	p.E104K	0.023	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_stop_codon	LSM14B	HGNC	ENSG00000149657	21	0	0	15	5	25	-	-	-	A	60701300	G	A	60701300	3	1	830	1	0	0	0	0	1	0	0	0	9121	1305	45	2		2	LSM14B	20	60701300	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09	25167410	60701300	2324220	28	69669										
DMD	0	genome.wustl.edu	37	chrX	31165493	31165493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	caggcggcctttgtgttgacGcagtagcttggcctcagcaa	13	11	1	1			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	X	31165493	31165493	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.10696	p.R3566C	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	46	0	0	31	8	20.51	-	-	-	A	31165493	G	A	31165493	3	1	830	1	0	0	0	0	1	0	0	0	4616	1087	38	1	467	1	DMD	23	31165493	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09		31165493	124105067	29	69670										
AFF2	0	genome.wustl.edu	37	chrX	147733596	147733596	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.206896551724138	6	0.174188572130957	2.14393939393939	2.85858585858586	1.90572390572391	0.567099567099567	1	0	aagaagtccagcaagaagacGatctcttttcttcaggcttt	8	9	3	3			TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	X	147733596	147733596	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.124	p.D42Y	0.998	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	93	0	0	62	25	28.74	-	-	-	T	147733596	G	T	147733596	3	4	830	1	0	0	0	0	1	0	0	0	357	1058	37	3	130	3	AFF2	23	147733596	Missense_Mutation	SNP	G	TCGA-E9-A1N5-01A-11D-A14G-09	116568103	147733596	7536964	30	69671										
TRNAU1AP	0	genome.wustl.edu	37	chr1	28904191	28904192	+	RNA	DEL	GA	GA	-													0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	ttgcatgatgtgagggagatGagagactcctttttaaaaat							TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	28904191	28904192	GA	-	DEL	TRNAU1AP	ENST00000480930	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.007	-	-	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	27	0	0	13	6	31.58	-	-	-	-	28904192	GA	-	28904191	6	5	831	0	1	1	0	1	0	0	0	0	16668	1305	45	0		0	TRNAU1AP	1	28904191	RNA	DEL	GA	TCGA-E9-A1N8-01A-11D-A142-09		28904191	220346430	1	69672										
TXLNA	0	genome.wustl.edu	37	chr1	32657943	32657943	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	agtcttcaaacacaaggaccTacaacagcagctggtggatg	10	10	2	0			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	32657943	32657943	T	A	SNP	TXLNA	ENST00000373609	human	ensembl	69_37n	1	known	missense	c.995	p.L332Q	1.000	pfam_Taxilin	pfam_Taxilin	-	no_errors	TXLNA	HGNC	ENSG00000084652	26	0	0	22	18	45	-	-	-	A	32657943	T	A	32657943	3	1	831	1	0	0	0	0	1	0	0	0	16884	1522	53	5	1017	5	TXLNA	1	32657943	Missense_Mutation	SNP	T	TCGA-E9-A1N8-01A-11D-A142-09	3753752	32657943	216592678	2	69673										
THRAP3	0	genome.wustl.edu	37	chr1	36752151	36752151	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	ccgaggaggctatggaaactAccgctcaaattggcagaatt	11	9	1	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	36752151	36752151	A	C	SNP	THRAP3	ENST00000354618	human	ensembl	69_37n	1	known	missense	c.320	p.Y107S	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118	45	0	0	22	18	45	-	-	-	C	36752151	A	C	36752151	3	2	831	1	0	0	0	0	1	0	0	0	15969	391	14	5	326	5	THRAP3	1	36752151	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	4094208	36752151	212498470	3	69674										
RANBP2	0	genome.wustl.edu	37	chr2	109367878	109367878	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	ttgaaacaaatgcacctgaaTcaatatgtattttagatctt	5	6	2	3			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	109367878	109367878	T	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.1432	p.S478A	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	159	0	0	149	96	39.18	-	-	-	G	109367878	T	G	109367878	3	3	831	1	0	0	0	0	1	0	0	0	13111	1435	50	5	1470	5	RANBP2	2	109367878	Missense_Mutation	SNP	T	TCGA-E9-A1N8-01A-11D-A142-09		109367878	133831495	4	69675										
MERTK	0	genome.wustl.edu	37	chr2	112740526	112740526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	agcagcaggatggagaactgGtgggctaccggatatcccac	14	10	0	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	112740526	112740526	G	T	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	1	known	missense	c.1252	p.V418L	0.955	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	43	0	0	56	9	13.85	-	-	-	T	112740526	G	T	112740526	3	4	831	1	0	0	0	0	1	0	0	0	9550	1261	44	4	1282	4	MERTK	2	112740526	Missense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09	3372648	112740526	130458847	5	69676										
CCDC148	0	genome.wustl.edu	37	chr2	159170392	159170392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	aaatccagtggtcttcttcaCttagttgacagtttctagaa	7	8	4	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	159170392	159170392	C	G	SNP	CCDC148	ENST00000283233	human	ensembl	69_37n	-1	known	missense	c.779	p.S260T	0.947	NULL	NULL	-	no_errors	CCDC148	HGNC	ENSG00000153237	39	0	0	33	7	17.5	-	-	-	G	159170392	C	G	159170392	3	3	831	1	0	0	0	0	1	0	0	0	2807	565	20	4	1076	4	CCDC148	2	159170392	Missense_Mutation	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09	46429866	159170392	84028981	6	69677										
MFSD1	0	genome.wustl.edu	37	chr3	158543842	158543842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tcttactctatttggtgaatCgtgcccagggtaagtagaag	11	7	2	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	3	158543842	158543842	C	T	SNP	MFSD1	ENST00000415822	human	ensembl	69_37n	1	known	missense	c.1474	p.R492C	0.920	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD1	HGNC	ENSG00000118855	74	0	0	58	39	39.8	-	-	-	T	158543842	C	T	158543842	3	4	831	1	0	0	0	0	1	0	0	0	9598	884	31	1	1528	1	MFSD1	3	158543842	Missense_Mutation	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09		158543842	39478588	7	69678										
MRS2	0	genome.wustl.edu	37	chr6	24409715	24409715	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	agaaaactgaattataccaaGagttaggtcttcaagccaga	8	7	2	4			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	24409715	24409715	G	T	SNP	MRS2	ENST00000443868	human	ensembl	69_37n	1	known	nonsense	c.328	p.E110*	1.000	NULL	NULL	-	no_errors	MRS2	HGNC	ENSG00000124532	55	0	0	41	37	47.44	-	-	-	T	24409715	G	T	24409715	4	4	831	1	0	0	0	0	0	1	0	0	9923	943	33	2	342	2	MRS2	6	24409715	Nonsense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09		24409715	146705352	8	69679										
HLA-C	0	genome.wustl.edu	37	chr6	31238886	31238886	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	ctccttcccgttctccaggtAtctgcggagccactccacgc	8	18	2	0			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	31238886	31238886	A	G	SNP	HLA-C	ENST00000539307	human	ensembl	69_37n	-1	known	missense	c.694	p.Y232H	0.878	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-C	HGNC	ENSG00000204525	21	0	0	26	9	25.71	-	-	-	G	31238886	A	G	31238886	3	3	831	1	0	0	0	0	1	0	0	0	7248	449	16	5	541	5	HLA-C	6	31238886	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	6829171	31238886	139876181	9	69680										
MDN1	0	genome.wustl.edu	37	chr6	90503844	90503844	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	cctgaaatggatcaattcatCactattaaatatcttcttaa	3	8	5	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	90503844	90503844	C	T	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.637	p.D213N	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	46	0	0	20	27	57.45	-	-	-	T	90503844	C	T	90503844	3	4	831	1	0	0	0	0	1	0	0	0	9486	826	29	2	16549	2	MDN1	6	90503844	Missense_Mutation	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09	59264958	90503844	80611223	10	69681										
MLL3	0	genome.wustl.edu	37	chr7	151962208	151962208	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tatatccaggcacattccatGatagtgctgaccacaagtag	8	10	0	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	7	151962208	151962208	G	C	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.1099	p.H367D	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	141	0	0	88	27	23.48	-	-	-	C	151962208	G	C	151962208	3	2	831	1	0	0	0	0	1	0	0	0	9693	1290	45	2	13844	2	MLL3	7	151962208	Missense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09		151962208	7176455	11	69682										
CLTA	0	genome.wustl.edu	37	chr9	36211699	36211699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gactttaaccccaagtctagCaagcaggccaaagatgtctc	8	12	2	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	9	36211699	36211699	C	T	SNP	CLTA	ENST00000242285	human	ensembl	69_37n	1	known	silent	c.675	p.S225	1.000	pfam_Clathrin_L-chain	pfam_Clathrin_L-chain	-	no_errors	CLTA	HGNC	ENSG00000122705	36	0	0	22	10	31.25	-	-	-	T	36211699	C	T	36211699	2	4	831	1	0	0	0	0	0	0	0	1	3594	709	25	4		4	CLTA	9	36211699	Silent	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09		36211699	105001732	12	69683										
PRUNE2	0	genome.wustl.edu	37	chr9	79324112	79324112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	cacatgtctaggttcccaggAcctgaactgattcgatttcg	9	11	1	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	9	79324112	79324112	A	T	SNP	PRUNE2	ENST00000426088	human	ensembl	69_37n	-1	known	missense	c.1042	p.S348T	0.344	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRUNE2	HGNC	ENSG00000106772	60	0	0	29	24	45.28	-	-	-	T	79324112	A	T	79324112	3	4	831	1	0	0	0	0	1	0	0	0	12721	262	10	5	6236	5	PRUNE2	9	79324112	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	43112413	79324112	61889319	13	69684										
HERC4	0	genome.wustl.edu	37	chr10	69695914	69695917	+	Frame_Shift_Del	DEL	TTTG	TTTG	-													0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gctaaaattcacttaccgatTttgtttgttaacagctgtgt							TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	TTTG	TTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	10	69695914	69695917	TTTG	-	DEL	HERC4	ENST00000395198	human	ensembl	69_37n	-1	known	frame_shift_del	c.2674_2671	p.Q891fs	1.000:0.985:1.000:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634	66	0	0	54	31	36.05	-	-	-	-	69695917	TTTG	-	69695914	7	5	831	1	0	1	0	1	0	0	0	0	7111	1841	64	0	515	0	HERC4	10	69695914	Frame_Shift_Del	DEL	TTTG	TCGA-E9-A1N8-01A-11D-A142-09		69695914	65838833	14	69685										
BEST1	0	genome.wustl.edu	37	chr11	61727502	61727502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gagcctcctttatgggctccAccttcaacatcaggtgtggc	10	13	2	0			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	11	61727502	61727502	A	G	SNP	BEST1	ENST00000449131	human	ensembl	69_37n	1	known	missense	c.907	p.T303A	1.000	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	21	0	0	14	20	57.14	-	-	-	G	61727502	A	G	61727502	3	3	831	1	0	0	0	0	1	0	0	0	1408	159	6	5	1117	5	BEST1	11	61727502	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09		61727502	73279014	15	69686										
FAT3	0	genome.wustl.edu	37	chr11	92507249	92507249	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tgatgcagagaagggtgttgGgacaattgtcatcgcaaaac	13	6	1	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	11	92507249	92507249	G	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.4238	p.G1413V	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	50	0	0	25	261	91.26	-	-	-	T	92507249	G	T	92507249	3	4	831	1	0	0	0	0	1	0	0	0	5737	1232	43	4	4260	4	FAT3	11	92507249	Missense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09	30779747	92507249	42499267	16	69687										
RAB27A	0	genome.wustl.edu	37	chr15	55497761	55497761	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	taactgatccgtagaggcatGaccatttgatcgcaccactc	8	12	0	4			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	15	55497761	55497761	G	A	SNP	RAB27A	ENST00000336787	human	ensembl	69_37n	-1	known	missense	c.610	p.H204Y	0.857	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27A	HGNC	ENSG00000069974	109	0	0	58	55	48.67	-	-	-	A	55497761	G	A	55497761	3	1	831	1	0	0	0	0	1	0	0	0	12997	1290	45	2	59	2	RAB27A	15	55497761	Missense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09		55497761	47033631	17	69688										
TP53	0	genome.wustl.edu	37	chr17	7577514	7577515	+	Frame_Shift_Ins	INS	-	-	T													0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tgacctggagtcttccagtgINStgatgatggtgaggatgggc							TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	17	7577514	7577515	-	T	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.767_766	p.T256fs	0.998:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	36	0	0	7	13	65	-	-	-	T	7577515	-	T	7577514	7	5	831	1	0	1	1	0	0	0	0	0	16477	1377	48	0	523	0	TP53	17	7577514	Frame_Shift_Ins	INS	-	TCGA-E9-A1N8-01A-11D-A142-09		7577514	73617696	18	69689										
JMJD6	0	genome.wustl.edu	37	chr17	74716578	74716578	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	cggggtgctcttgcttcaaaAtcctgagaggcaagaagtgt	13	8	2	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	17	74716578	74716578	A	C	SNP	JMJD6	ENST00000445478	human	ensembl	69_37n	-1	known	missense	c.944	p.I315S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD6	HGNC	ENSG00000070495	22	0	0	12	12	50	-	-	-	C	74716578	A	C	74716578	3	2	831	1	0	0	0	0	1	0	0	0	8007	101	4	5	316	5	JMJD6	17	74716578	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	67139064	74716578	6478632	19	69690										
ARMC6	0	genome.wustl.edu	37	chr19	19168318	19168318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gggctgaggcactcatcatgCaggcccgatctgcccaccgt	12	15	3	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	19168318	19168318	C	A	SNP	ARMC6	ENST00000392336	human	ensembl	69_37n	1	known	missense	c.1387	p.Q463K	0.087	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676	15	0	0	12	21	63.64	-	-	-	A	19168318	C	A	19168318	3	1	831	1	0	0	0	0	1	0	0	0	959	711	25	4	1338	4	ARMC6	19	19168318	Missense_Mutation	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09		19168318	39960665	20	69691										
ZNF540	0	genome.wustl.edu	37	chr19	38103247	38103247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	atactggtgtaaaaccctacGaatgtaaggaatgtggaaag	11	5	0	0			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	38103247	38103247	G	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	1	known	missense	c.1066	p.E356K	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	57	0	0	13	11	45.83	-	-	-	A	38103247	G	A	38103247	3	1	831	1	0	0	0	0	1	0	0	0	18071	1059	37	1	1080	1	ZNF540	19	38103247	Missense_Mutation	SNP	G	TCGA-E9-A1N8-01A-11D-A142-09	18934929	38103247	21025736	21	69692										
KLK13	0	genome.wustl.edu	37	chr19	51563338	51563338	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	agggcgtgcttgcctaggtaAactttgagccccctgtgggt	14	10	0	1			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	51563338	51563338	A	G	SNP	KLK13	ENST00000156476	human	ensembl	69_37n	-1	known	silent	c.252	p.V84	0.997	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	23	0	0	10	5	33.33	-	-	-	G	51563338	A	G	51563338	2	3	831	1	0	0	0	0	0	0	0	1	8454	1	1	5		5	KLK13	19	51563338	Silent	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	13460091	51563338	7565645	22	69693										
ZNF649	0	genome.wustl.edu	37	chr19	52394487	52394487	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gtacaacgagtagtgattttCtggagaaagctctcccacat	9	9	2	2			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	52394487	52394487	C	G	SNP	ZNF649	ENST00000354957	human	ensembl	69_37n	-1	known	missense	c.902	p.R301T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093	85	0	0	72	9	11.11	-	-	-	G	52394487	C	G	52394487	3	3	831	1	0	0	0	0	1	0	0	0	18160	913	32	2	619	2	ZNF649	19	52394487	Missense_Mutation	SNP	C	TCGA-E9-A1N8-01A-11D-A142-09	831149	52394487	6734496	23	69694										
MXRA5	0	genome.wustl.edu	37	chrX	3238507	3238510	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	gggtgactcccaactgtggaAaagaaagagtcttgttggta							TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	3238507	3238510	AAAG	-	DEL	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	frame_shift_del	c.5219_5216	p.S1739fs	0.029:0.022:0.000:0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	64	0	0	31	16	34.04	-	-	-	-	3238510	AAAG	-	3238507	7	5	831	1	0	1	0	1	0	0	0	0	10075	14	1	0	3279	0	MXRA5	23	3238507	Frame_Shift_Del	DEL	AAAG	TCGA-E9-A1N8-01A-11D-A142-09		3238507	152032053	24	69695										
DMD	0	genome.wustl.edu	37	chrX	31200885	31200885	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tgattggacactctttgcagAtgttacatttggcctgatgc	10	8	1	3			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	31200885	31200885	A	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9944	p.I3315N	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_Znf_ZZ	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	33	0	0	32	17	34.69	-	-	-	T	31200885	A	T	31200885	3	4	831	1	0	0	0	0	1	0	0	0	4616	333	12	5	1251	5	DMD	23	31200885	Missense_Mutation	SNP	A	TCGA-E9-A1N8-01A-11D-A142-09	27962378	31200885	124069675	25	69696										
TBC1D25	0	genome.wustl.edu	37	chrX	48418750	48418750	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.153846153846154	4	0.12311268215943	2.99295774647887	3.9906103286385	2.3943661971831	1	1	0	tagtacctttgaagatgctgTtgaccacctggccacagcca	9	12	0	3			TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	48418750	48418750	T	C	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.1454	p.V485A	0.352	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	36	0	0	12	16	57.14	-	-	-	C	48418750	T	C	48418750	3	2	831	1	0	0	0	0	1	0	0	0	15707	1725	60	5	1476	5	TBC1D25	23	48418750	Missense_Mutation	SNP	T	TCGA-E9-A1N8-01A-11D-A142-09	17217865	48418750	106851810	26	69697										
MACF1	0	genome.wustl.edu	37	chr1	39838233	39838233	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ttctttagaaaatctcatcaTggaaatcacagcacctgatt	5	9	4	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	39838233	39838233	T	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.6992	p.M2331T	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	60	0	0	38	6	13.64	-	-	-	C	39838233	T	C	39838233	3	2	832	1	0	0	0	0	1	0	0	0	9211	1464	51	5	13329	5	MACF1	1	39838233	Missense_Mutation	SNP	T	TCGA-E9-A1N9-01A-11D-A14G-09		39838233	209412388	1	69698										
RLF	0	genome.wustl.edu	37	chr1	40702996	40702996	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gaagatcttttctgtgcagaAtcagctaattctcaaataga	7	7	4	3			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	40702996	40702996	A	T	SNP	RLF	ENST00000372771	human	ensembl	69_37n	1	known	missense	c.2622	p.E874D	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	34	0	0	22	12	35.29	-	-	-	T	40702996	A	T	40702996	3	4	832	1	0	0	0	0	1	0	0	0	13475	98	4	5	2652	5	RLF	1	40702996	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	864763	40702996	208547625	2	69699										
PRPF38A	0	genome.wustl.edu	37	chr1	52871446	52871446	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ccctttctgtgtttaaccttGaagatgcttcaaattcaacc	5	11	3	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	52871446	52871446	G	C	SNP	PRPF38A	ENST00000257181	human	ensembl	69_37n	1	known	missense	c.225	p.L75F	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748	80	0	0	37	7	15.91	-	-	-	C	52871446	G	C	52871446	3	2	832	1	0	0	0	0	1	0	0	0	12648	1281	45	2	231	2	PRPF38A	1	52871446	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	12168450	52871446	196379175	3	69700										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	8	0	0	17	11	39.29	-	-	-	C	154842243	A	C	154842243	2	2	832	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	101970797	154842243	94408378	4	69701	503	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	8	0	0	16	11	40.74	-	-	-	T	154842244	A	T	154842244	3	4	832	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	1	154842244	94408377	5	69702	503	2								
SCN7A	0	genome.wustl.edu	37	chr2	167273377	167273377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ttgttgggtcaatgcattcaTagaatctgccagcaaataag	9	7	3	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	167273377	167273377	T	C	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.3254	p.Y1085C	0.588	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	74	0	0	10	23	69.7	-	-	-	C	167273377	T	C	167273377	3	2	832	1	0	0	0	0	1	0	0	0	14011	1406	49	5	1818	5	SCN7A	2	167273377	Missense_Mutation	SNP	T	TCGA-E9-A1N9-01A-11D-A14G-09		167273377	75925996	6	69703										
LRP2	0	genome.wustl.edu	37	chr2	169993902	169993902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	aagactgtatggtttctcacCtggattggctgaaccacttt	9	9	1	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	169993902	169993902	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.13620	p.Q4540H	0.984	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	75	0	0	42	11	20.75	-	-	-	A	169993902	C	A	169993902	3	1	832	1	0	0	0	0	1	0	0	0	9022	695	24	4	363	4	LRP2	2	169993902	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	2720525	169993902	73205471	7	69704										
DIS3L2	0	genome.wustl.edu	37	chr2	232995451	232995451	+	Frame_Shift_Del	DEL	C	C	-													0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tcattgcctacagattttctCcacgtgtccaaatggctttc							TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	232995451	232995451	C	-	DEL	DIS3L2	ENST00000409401	human	ensembl	69_37n	1	known	frame_shift_del	c.724	p.P242fs	0.000	NULL	NULL	-	no_errors	DIS3L2	HGNC	ENSG00000144535	40	0	0	14	2	12.5	-	-	-	-	232995451	C	-	232995451	7	5	832	1	0	1	0	1	0	0	0	0	4573	870	30	0		0	DIS3L2	2	232995451	Frame_Shift_Del	DEL	C	TCGA-E9-A1N9-01A-11D-A14G-09	63001549	232995451	10203922	8	69705										
CCDC39	0	genome.wustl.edu	37	chr3	180379771	180379771	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	atgttcttcactttcagtctCacgctcccttgctttgcaaa	5	13	4	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	3	180379771	180379771	C	T	SNP	CCDC39	ENST00000442201	human	ensembl	69_37n	-1	known	missense	c.235	p.E79K	1.000	superfamily_tRNA-bd_arm	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	79	0	0	36	10	21.74	-	-	-	T	180379771	C	T	180379771	3	4	832	1	0	0	0	0	1	0	0	0	2837	835	29	2	2662	2	CCDC39	3	180379771	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09		180379771	17642659	9	69706										
ALG3	0	genome.wustl.edu	37	chr3	183963556	183963556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gtcataggtaccattgatgaCgccttctacctcggccatgt	9	12	2	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	3	183963556	183963556	C	T	SNP	ALG3	ENST00000397676	human	ensembl	69_37n	-1	known	missense	c.241	p.V81I	0.992	pfam_Glycosyltransferase_ALG3	pfam_Glycosyltransferase_ALG3	-	no_errors	ALG3	HGNC	ENSG00000214160	61	0	0	11	13	54.17	-	-	-	T	183963556	C	T	183963556	3	4	832	1	0	0	0	0	1	0	0	0	520	536	19	1	1107	1	ALG3	3	183963556	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	3583785	183963556	14058874	10	69707										
LCORL	0	genome.wustl.edu	37	chr4	17885617	17885617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gttttttcctgggctgcttaCtgtcttttcgatctaatcca	7	10	2	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	17885617	17885617	C	T	SNP	LCORL	ENST00000382226	human	ensembl	69_37n	-1	known	missense	c.1535	p.S512N	1.000	NULL	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	LCORL	HGNC	ENSG00000178177	71	0	0	36	6	14.29	-	-	-	T	17885617	C	T	17885617	3	4	832	1	0	0	0	0	1	0	0	0	8744	565	20	4	462	4	LCORL	4	17885617	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09		17885617	173268659	11	69708										
EPHA5	0	genome.wustl.edu	37	chr4	66356262	66356262	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tttgccggggaaggtacctgAcatgaccgccacactcctca	10	14	1	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	66356262	66356262	A	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	missense	c.1235	p.V412D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	50	0	0	28	4	12.5	-	-	-	T	66356262	A	T	66356262	3	4	832	1	0	0	0	0	1	0	0	0	5207	275	10	5	1934	5	EPHA5	4	66356262	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	48470645	66356262	124798014	12	69709										
PTPN13	0	genome.wustl.edu	37	chr4	87671758	87671758	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tcgacctttatcagttcaagCtgagattctgaagaggctat	9	8	3	3			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	87671758	87671758	C	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	1	known	missense	c.2786	p.A929G	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	29	0	0	16	5	23.81	-	-	-	G	87671758	C	G	87671758	3	3	832	1	0	0	0	0	1	0	0	0	12863	797	28	4	2852	4	PTPN13	4	87671758	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	21315496	87671758	103482518	13	69710										
DCHS2	0	genome.wustl.edu	37	chr4	155160378	155160378	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	atagaattctgtaagaaatgTtctcattgctttctaagtct	6	6	4	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	155160378	155160378	T	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.6071	p.N2024I	0.026	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	61	0	0	26	11	29.73	-	-	-	A	155160378	T	A	155160378	3	1	832	1	0	0	0	0	1	0	0	0	4319	1725	60	5	2687	5	DCHS2	4	155160378	Missense_Mutation	SNP	T	TCGA-E9-A1N9-01A-11D-A14G-09	67488620	155160378	35993898	14	69711										
DCHS2	0	genome.wustl.edu	37	chr4	155411020	155411020	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tcgcggctctctctgtccagGggcccctccacgcaaaggaa	11	16	2	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	155411020	155411020	G	T	SNP	DCHS2	ENST00000339452	human	ensembl	69_37n	-1	known	silent	c.1488	p.P496	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	13	0	0	24	8	25	-	-	-	T	155411020	G	T	155411020	2	4	832	1	0	0	0	0	0	0	0	1	4319	1219	43	4		4	DCHS2	4	155411020	Silent	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	250642	155411020	35743256	15	69712										
TLL1	0	genome.wustl.edu	37	chr4	167012408	167012408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	aacaagataccagatcccctTgtggctactggaaataaaat	7	9	0	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	167012408	167012408	T	C	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	1	known	silent	c.2571	p.L857	0.458	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	37	0	0	26	6	18.75	-	-	-	C	167012408	T	C	167012408	2	2	832	1	0	0	0	0	0	0	0	1	16040	1799	63	5		5	TLL1	4	167012408	Silent	SNP	T	TCGA-E9-A1N9-01A-11D-A14G-09	11601388	167012408	24141868	16	69713										
CDH9	0	genome.wustl.edu	37	chr5	26881562	26881562	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	atcccgtctaagtttactgtCttctcttgcctctggattcc	6	13	4	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	26881562	26881562	C	A	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	missense	c.2053	p.D685Y	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	97	0	0	54	10	15.62	-	-	-	A	26881562	C	A	26881562	3	1	832	1	0	0	0	0	1	0	0	0	3146	913	32	2	320	2	CDH9	5	26881562	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09		26881562	154033698	17	69714										
PARP8	0	genome.wustl.edu	37	chr5	50130705	50130705	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	agaagagatatattaagtcgGaatggactaggattccttta	10	4	0	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	50130705	50130705	G	T	SNP	PARP8	ENST00000503561	human	ensembl	69_37n	1	novel	nonsense	c.1540	p.E514*	0.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	61	0	0	24	7	22.58	-	-	-	T	50130705	G	T	50130705	4	4	832	1	0	0	0	0	0	1	0	0	11538	1189	41	2		2	PARP8	5	50130705	Nonsense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	23249143	50130705	130784555	18	69715										
MAP3K1	0	genome.wustl.edu	37	chr5	56177954	56177954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ctctcctttatctcatcattCccaattaatgtttccagcct	2	14	3	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	56177954	56177954	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.2927	p.S976F	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	86	0	0	23	5	17.86	-	-	-	T	56177954	C	T	56177954	3	4	832	1	0	0	0	0	1	0	0	0	9314	855	30	2	2981	2	MAP3K1	5	56177954	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	6047249	56177954	124737306	19	69716										
TMEM171	0	genome.wustl.edu	37	chr5	72424228	72424228	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ttgccttaggtgactcggtaAtaatatttccaccccctcca	6	13	0	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	72424228	72424228	A	T	SNP	TMEM171	ENST00000454765	human	ensembl	69_37n	1	known	missense	c.652	p.I218L	0.999	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111	122	0	0	66	15	18.52	-	-	-	T	72424228	A	T	72424228	3	4	832	1	0	0	0	0	1	0	0	0	16183	101	4	5	658	5	TMEM171	5	72424228	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	16246274	72424228	108491032	20	69717										
PCDHA2	0	genome.wustl.edu	37	chr5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	agctggtgccgcgcctgttcCgggtggcgtccaaaagacac	14	13	0	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	140174742	140174742	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	missense	c.193	p.R65W	0.658	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	34	0	0	22	6	21.43	-	-	-	T	140174742	C	T	140174742	3	4	832	1	0	0	0	0	1	0	0	0	11597	643	23	1	195	1	PCDHA2	5	140174742	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	67750514	140174742	40740518	21	69718										
PCDHGB3	0	genome.wustl.edu	37	chr5	140752364	140752364	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gaaatgccttctaattcaggCaatttgcaaaaggtgagttt	9	6	2	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	140752364	140752364	C	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	silent	c.2403	p.G801	0.005	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	33	0	0	10	4	28.57	-	-	-	A	140752364	C	A	140752364	2	1	832	1	0	0	0	0	0	0	0	1	11637	697	25	4		4	PCDHGB3	5	140752364	Silent	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	577622	140752364	40162896	22	69719										
GNB2L1	0	genome.wustl.edu	37	chr5	180665141	180665141	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gtggcagcacacagccagtaGcggttagggctgaagcacag	15	10	0	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	180665141	180665141	G	C	SNP	GNB2L1	ENST00000504128	human	ensembl	69_37n	-1	putative	missense	c.454	p.L152V	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNB2L1	HGNC	ENSG00000204628	49	0	0	34	7	17.07	-	-	-	C	180665141	G	C	180665141	3	2	832	1	0	0	0	0	1	0	0	0	6570	958	34	4	230	4	GNB2L1	5	180665141	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	39912777	180665141	250119	23	69720										
MICA	0	genome.wustl.edu	37	chr6	31378388	31378388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ctgtgcagtcagggtttcttGctgaggtacatctggatggt	14	7	3	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	31378388	31378388	G	A	SNP	MICA	ENST00000364810	human	ensembl	69_37n	1	known	missense	c.139	p.A47T	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	MICA	HGNC	ENSG00000204520	8	0	0	1	6	85.71	-	-	-	A	31378388	G	A	31378388	3	1	832	1	0	0	0	0	1	0	0	0	9639	1319	46	4	145	4	MICA	6	31378388	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		31378388	139736679	24	69721										
EGFL8	0	genome.wustl.edu	37	chr6	32133979	32133979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	agctgtgcactctcttaggcGgattctccttcctcctgcta	8	14	2	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	32133979	32133979	G	A	SNP	EGFL8	ENST00000333845	human	ensembl	69_37n	1	known	missense	c.37	p.G13R	0.017	NULL	pfam_EMI_domain,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	EGFL8	HGNC	ENSG00000241404	48	0	0	25	13	34.21	-	-	-	A	32133979	G	A	32133979	3	1	832	1	0	0	0	0	1	0	0	0	5000	1117	39	1	39	1	EGFL8	6	32133979	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	755591	32133979	138981088	25	69722										
LPA	0	genome.wustl.edu	37	chr6	161007579	161007579	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	attgcgtcaggttgcagtacTcccatctgacactgggatcc	10	12	2	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	161007579	161007579	T	C	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.4031	p.E1344G	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	111	0	0	43	7	14	-	-	-	C	161007579	T	C	161007579	3	2	832	1	0	0	0	0	1	0	0	0	8969	1551	54	5	2151	5	LPA	6	161007579	Missense_Mutation	SNP	T	TCGA-E9-A1N9-01A-11D-A14G-09	128873600	161007579	10107488	26	69723										
ETV1	0	genome.wustl.edu	37	chr7	14025746	14025746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gcattagatacacacctaacGttctgtgttgtgaacaaggt	9	8	1	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	14025746	14025746	G	T	SNP	ETV1	ENST00000420159	human	ensembl	69_37n	-1	known	missense	c.56	p.T19K	0.988	NULL	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	66	0	0	38	7	15.56	-	-	-	T	14025746	G	T	14025746	3	4	832	1	0	0	0	0	1	0	0	0	5314	1145	40	3	1297	3	ETV1	7	14025746	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		14025746	145112917	27	69724										
NFE2L3	0	genome.wustl.edu	37	chr7	26225179	26225180	+	Frame_Shift_Del	DEL	AA	AA	-													0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	aagcaaagaaggaaactcttAagagagagcaagcacaatgt							TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	26225179	26225180	AA	-	DEL	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	frame_shift_del	c.1861_1862	p.K621fs	0.004:0.004	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	41	0	0	15	8	34.78	-	-	-	-	26225180	AA	-	26225179	7	5	832	1	0	1	0	1	0	0	0	0	10441	363	13	0	1875	0	NFE2L3	7	26225179	Frame_Shift_Del	DEL	AA	TCGA-E9-A1N9-01A-11D-A14G-09	12199433	26225179	132913484	28	69725										
STEAP1	0	genome.wustl.edu	37	chr7	89790307	89790307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	acttttctttacactcttctGagggaagtaattcacccttt	5	10	4	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	89790307	89790307	G	A	SNP	STEAP1	ENST00000297205	human	ensembl	69_37n	1	known	silent	c.273	p.L91	0.505	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647	95	0	0	45	7	13.46	-	-	-	A	89790307	G	A	89790307	2	1	832	1	0	0	0	0	0	0	0	1	15368	1277	45	2		2	STEAP1	7	89790307	Silent	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	63565128	89790307	69348356	29	69726										
HYAL4	0	genome.wustl.edu	37	chr7	123508629	123508629	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	attgggatactatccgtggtAtacatcacaaggggtcccca	10	10	1	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	123508629	123508629	A	G	SNP	HYAL4	ENST00000223026	human	ensembl	69_37n	1	known	missense	c.302	p.Y101C	0.998	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase,prints_Glyco_hydro_56_PH20	-	no_errors	HYAL4	HGNC	ENSG00000106302	32	0	0	18	4	18.18	-	-	-	G	123508629	A	G	123508629	3	3	832	1	0	0	0	0	1	0	0	0	7520	449	16	5	304	5	HYAL4	7	123508629	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	33718322	123508629	35630034	30	69727										
PTPRN2	0	genome.wustl.edu	37	chr7	157691399	157691399	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tttgaagaattttcagtccaGaggtttcctccagtttgtct	8	8	2	3			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	157691399	157691399	G	T	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	missense	c.1823	p.S608Y	0.332	pfam_Receptor_IA-2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	81	0	0	39	8	17.02	-	-	-	T	157691399	G	T	157691399	3	4	832	1	0	0	0	0	1	0	0	0	12891	942	33	2	1341	2	PTPRN2	7	157691399	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	34182770	157691399	1447264	31	69728										
PTDSS1	0	genome.wustl.edu	37	chr8	97274333	97274333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gaactacaaaatgcatttccGgatgatcaacgagcagcaag	9	9	1	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	8	97274333	97274333	G	A	SNP	PTDSS1	ENST00000517309	human	ensembl	69_37n	1	known	missense	c.65	p.R22Q	1.000	NULL	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471	32	0	0	47	6	11.32	-	-	-	A	97274333	G	A	97274333	3	1	832	1	0	0	0	0	1	0	0	0	12816	1116	39	1	67	1	PTDSS1	8	97274333	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		97274333	49089689	32	69729										
OR13C5	0	genome.wustl.edu	37	chr9	107361066	107361066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	agacaataattaataacaaaGgtgtcaataggaacaatgtt	7	4	1	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	9	107361066	107361066	G	T	SNP	OR13C5	ENST00000374779	human	ensembl	69_37n	-1	known	missense	c.629	p.P210H	0.012	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800	36	0	0	24	5	17.24	-	-	-	T	107361066	G	T	107361066	3	4	832	1	0	0	0	0	1	0	0	0	11010	1000	35	4	329	4	OR13C5	9	107361066	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		107361066	33852365	33	69730										
GTF3C4	0	genome.wustl.edu	37	chr9	135553785	135553785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gtcgggcatctgtaccacccAgcaggtcaagcataacaacg	10	13	2	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	9	135553785	135553785	A	G	SNP	GTF3C4	ENST00000372146	human	ensembl	69_37n	1	known	missense	c.779	p.Q260R	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484	46	0	0	29	4	12.12	-	-	-	G	135553785	A	G	135553785	3	3	832	1	0	0	0	0	1	0	0	0	6926	188	7	5	785	5	GTF3C4	9	135553785	Missense_Mutation	SNP	A	TCGA-E9-A1N9-01A-11D-A14G-09	28192719	135553785	5659646	34	69731										
SLC39A12	0	genome.wustl.edu	37	chr10	18242296	18242296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ctgagacagacaaaccctcaGcccaggatagcagaagccgt	10	13	1	3			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	10	18242296	18242296	G	A	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.91	p.A31T	0.000	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	59	0	0	41	6	12.77	-	-	-	A	18242296	G	A	18242296	3	1	832	1	0	0	0	0	1	0	0	0	14704	971	34	4	93	4	SLC39A12	10	18242296	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		18242296	117292451	35	69732										
KATNB1	0	genome.wustl.edu	37	chr16	57789124	57789124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ccacccggaacgagcccatcGggctgaaggcctccgacttc	11	17	0	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	16	57789124	57789124	G	C	SNP	KATNB1	ENST00000379661	human	ensembl	69_37n	1	known	missense	c.1390	p.G464R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854	22	0	0	14	5	26.32	-	-	-	C	57789124	G	C	57789124	3	2	832	1	0	0	0	0	1	0	0	0	8041	1116	39	3	1444	3	KATNB1	16	57789124	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		57789124	32565629	36	69733										
PITPNM3	0	genome.wustl.edu	37	chr17	6387550	6387550	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gcctacctcgctgtcttcgtGgatctcgatgcttccctggg	11	14	2	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	6387550	6387550	G	T	SNP	PITPNM3	ENST00000262483	human	ensembl	69_37n	-1	known	missense	c.337	p.H113N	0.995	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	41	0	0	21	4	16	-	-	-	T	6387550	G	T	6387550	3	4	832	1	0	0	0	0	1	0	0	0	12026	1348	47	4	2651	4	PITPNM3	17	6387550	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		6387550	74807660	37	69734										
TP53	0	genome.wustl.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0	16	23	58.97	-	-	-	A	7578263	G	A	7578263	4	1	832	1	0	0	0	0	0	1	0	0	16477	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	1190713	7578263	73616947	38	69735										
DHX8	0	genome.wustl.edu	37	chr17	41570310	41570310	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tggcgggataagcatgtggaCcgccctcctccagaagagcc	13	13	0	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	41570310	41570310	C	A	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	missense	c.765	p.D255E	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	47	0	0	26	5	16.13	-	-	-	A	41570310	C	A	41570310	3	1	832	1	0	0	0	0	1	0	0	0	4551	506	18	4	787	4	DHX8	17	41570310	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	33992047	41570310	39624900	39	69736										
ADAM11	0	genome.wustl.edu	37	chr17	42855138	42855138	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	acagcctgcgggcctaacatGttgtgcctggaccatcgctg	12	13	0	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	42855138	42855138	G	C	SNP	ADAM11	ENST00000200557	human	ensembl	69_37n	1	known	missense	c.1977	p.M659I	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670	25	0	0	19	8	29.63	-	-	-	C	42855138	G	C	42855138	3	2	832	1	0	0	0	0	1	0	0	0	235	1377	48	4	2067	4	ADAM11	17	42855138	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	1284828	42855138	38340072	40	69737										
KCNH6	0	genome.wustl.edu	37	chr17	61619777	61619777	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ttctggagtaagctggaggtCaccttcaacctgcgggacgt	13	10	3	0			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	61619777	61619777	C	A	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	silent	c.2130	p.V710	1.000	smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	41	0	0	27	5	15.62	-	-	-	A	61619777	C	A	61619777	2	1	832	1	0	0	0	0	0	0	0	1	8090	813	29	2		2	KCNH6	17	61619777	Silent	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	18764639	61619777	19575433	41	69738										
RNF157	0	genome.wustl.edu	37	chr17	74150372	74150372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	atcttttaccaccttcctgcGtgggtgatccatcctcttcc	6	15	2	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	74150372	74150372	G	A	SNP	RNF157	ENST00000269391	human	ensembl	69_37n	-1	known	missense	c.1802	p.T601M	0.026	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576	58	0	0	17	5	22.73	-	-	-	A	74150372	G	A	74150372	3	1	832	1	0	0	0	0	1	0	0	0	13540	1145	40	1	249	1	RNF157	17	74150372	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09	12530595	74150372	7044838	42	69739										
PNMAL1	0	genome.wustl.edu	37	chr19	46973547	46973549	+	In_Frame_Del	DEL	TTC	TTC	-													0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gcactgcttcctgcctggagTtcttcttctgcttctttctc							TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	19	46973547	46973549	TTC	-	DEL	PNMAL1	ENST00000313683	human	ensembl	69_37n	-1	known	in_frame_del	c.746_744	p.K248in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013	17	0	0	9	4	30.77	-	-	-	-	46973549	TTC	-	46973547	7	5	832	1	0	1	0	1	0	0	0	0	12231	1725	60	0	603	0	PNMAL1	19	46973547	In_Frame_Del	DEL	TTC	TCGA-E9-A1N9-01A-11D-A14G-09		46973547	12155436	43	69740										
LILRB5	0	genome.wustl.edu	37	chr19	54758227	54758227	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ccagaggcctcagtgactcaCcaggtgtgggggtggagcct	16	11	2	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	19	54758227	54758227	C	T	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	splice_site	c.1279+1	e7+1	0.000	-	-	-	no_errors	LILRB5	HGNC	ENSG00000105609	21	0	0	15	13	46.43	-	-	-	T	54758227	C	T	54758227	5	4	832	1	0	0	0	0	0	0	1	0	8849	521	18	4	496	4	LILRB5	19	54758227	Splice_Site	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	7784680	54758227	4370756	44	69741										
KRTAP22-2	0	genome.wustl.edu	37	chr21	31962623	31962623	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gaaagttgcaggcatatccaGagttaccatattcagagcca	9	9	1	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	31962623	31962623	G	T	SNP	KRTAP22-2	ENST00000382830	human	ensembl	69_37n	-1	known	missense	c.71	p.S24Y	0.000	NULL	NULL	-	no_errors	KRTAP22-2	HGNC	ENSG00000206106	53	0	0	22	9	29.03	-	-	-	T	31962623	G	T	31962623	3	4	832	1	0	0	0	0	1	0	0	0	8594	942	33	2	70	2	KRTAP22-2	21	31962623	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		31962623	16167272	45	69742										
DNAJC28	0	genome.wustl.edu	37	chr21	34860884	34860884	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	tttcctagacactaaaattgCctctctgagttgctcaatag	6	10	2	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	34860884	34860884	C	G	SNP	DNAJC28	ENST00000314399	human	ensembl	69_37n	-1	known	missense	c.817	p.A273P	0.017	pfam_DnaJ_homolog_subfam-C_membr-28	pfam_DnaJ_homolog_subfam-C_membr-28,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC28	HGNC	ENSG00000177692	83	0	0	58	24	29.27	-	-	-	G	34860884	C	G	34860884	3	3	832	1	0	0	0	0	1	0	0	0	4681	739	26	4	353	4	DNAJC28	21	34860884	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	2898261	34860884	13269011	46	69743										
DIP2A	0	genome.wustl.edu	37	chr21	47910571	47910571	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gggccctcacaaaccacggcCgctgcacccaagcagcagaa	10	17	1	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	47910571	47910571	C	G	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	silent	c.222	p.A74	0.000	pfam_DMAP1-bd	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	44	0	0	23	14	37.84	-	-	-	G	47910571	C	G	47910571	2	3	832	1	0	0	0	0	0	0	0	1	4563	639	23	3		3	DIP2A	21	47910571	Silent	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	13049687	47910571	219324	47	69744										
MID1	0	genome.wustl.edu	37	chrX	10442722	10442722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	gggaaaaatctaaggcaaagGtgtcaaatgtgtcattgagg	13	4	3	1			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	X	10442722	10442722	G	A	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.1082	p.T361I	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	99	0	0	33	9	21.43	-	-	-	A	10442722	G	A	10442722	3	1	832	1	0	0	0	0	1	0	0	0	9647	1261	44	4	941	4	MID1	23	10442722	Missense_Mutation	SNP	G	TCGA-E9-A1N9-01A-11D-A14G-09		10442722	144827838	48	69745										
WDR13	0	genome.wustl.edu	37	chrX	48460302	48460302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	3	0.930543778830265	0.884848484848485	0.926984126984127	0.865185185185185	1	1	0	ccctggccggctgctctgggCgggtgatgaccatggcagtg	17	12	1	2			TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	X	48460302	48460302	C	T	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	missense	c.962	p.A321V	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	34	0	0	11	4	26.67	-	-	-	T	48460302	C	T	48460302	3	4	832	1	0	0	0	0	1	0	0	0	17372	768	27	1	984	1	WDR13	23	48460302	Missense_Mutation	SNP	C	TCGA-E9-A1N9-01A-11D-A14G-09	38017580	48460302	106810258	49	69746										
CDK11B	0	genome.wustl.edu	37	chr1	1573174	1573174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	cttgaggatggtgttgatctCcctcagcgacgtgatcggga	14	9	2	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	1573174	1573174	C	T	SNP	CDK11B	ENST00000407249	human	ensembl	69_37n	-1	known	missense	c.1423	p.E475K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11B	HGNC	ENSG00000248333	79	0	0	86	18	17.31	-	-	-	T	1573174	C	T	1573174	3	4	833	1	0	0	0	0	1	0	0	0	3156	864	30	2	966	2	CDK11B	1	1573174	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		1573174	247677447	1	69747										
CSMD2	0	genome.wustl.edu	37	chr1	34100819	34100819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	aaccaaaacccataccatagTccttgggcacagtaacaaaa	5	12	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	34100819	34100819	T	C	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.5081	p.D1694G	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	41	0	0	24	8	25	-	-	-	C	34100819	T	C	34100819	3	2	833	1	0	0	0	0	1	0	0	0	3977	1667	58	5	5658	5	CSMD2	1	34100819	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	32527645	34100819	215149802	2	69748										
SV2A	0	genome.wustl.edu	37	chr1	149880762	149880762	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	acctgaatgacatggtgaacCacacacccatcatcatcaga	6	13	3	4			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	149880762	149880762	C	A	SNP	SV2A	ENST00000369146	human	ensembl	69_37n	-1	known	missense	c.1361	p.W454L	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2A	HGNC	ENSG00000159164	109	0	0	164	205	55.56	-	-	-	A	149880762	C	A	149880762	3	1	833	1	0	0	0	0	1	0	0	0	15508	595	21	4	891	4	SV2A	1	149880762	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	115779943	149880762	99369859	3	69749										
FCRL5	0	genome.wustl.edu	37	chr1	157504397	157504397	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ggtgactggcaagaacccagCacttaccagtgacaaaaagg	11	10	0	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	157504397	157504397	C	A	SNP	FCRL5	ENST00000368189	human	ensembl	69_37n	-1	known	missense	c.1688	p.C563F	0.002	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	20	0	0	2	7	77.78	-	-	-	A	157504397	C	A	157504397	3	1	833	1	0	0	0	0	1	0	0	0	5844	725	25	4		4	FCRL5	1	157504397	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	7623635	157504397	91746224	4	69750										
WDR64	0	genome.wustl.edu	37	chr1	241936093	241936093	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gttcattaatttctcgaataGgtgaacaaacagatgtaatg	8	5	2	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	241936093	241936093	G	T	SNP	WDR64	ENST00000366552	human	ensembl	69_37n	1	known	splice_site	c.2261-1	e19-1	0.731	-	-	-	no_errors	WDR64	HGNC	ENSG00000162843	38	0	0	24	16	40	-	-	-	T	241936093	G	T	241936093	5	4	833	1	0	0	0	0	0	0	1	0	17412	1014	35	4	2334	4	WDR64	1	241936093	Splice_Site	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	84431696	241936093	7314528	5	69751										
FAM49A	0	genome.wustl.edu	37	chr2	16740738	16740738	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctattcttacatcgatcttgGatgtcttgcagaaagctccc	7	11	3	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	16740738	16740738	G	C	SNP	FAM49A	ENST00000355549	human	ensembl	69_37n	-1	known	missense	c.827	p.S276C	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872	38	0	0	39	6	13.33	-	-	-	C	16740738	G	C	16740738	3	2	833	1	0	0	0	0	1	0	0	0	5621	1174	41	2	156	2	FAM49A	2	16740738	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09		16740738	226458635	6	69752										
PRKD3	0	genome.wustl.edu	37	chr2	37501751	37501751	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tataccatagtatcagtaatGatttcaaaacagtgtggatt	7	5	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	37501751	37501751	G	T	SNP	PRKD3	ENST00000234179	human	ensembl	69_37n	-1	known	silent	c.1464	p.I488	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	29	0	0	11	13	54.17	-	-	-	T	37501751	G	T	37501751	2	4	833	1	0	0	0	0	0	0	0	1	12601	1280	45	2		2	PRKD3	2	37501751	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	20761013	37501751	205697622	7	69753										
PDE11A	0	genome.wustl.edu	37	chr2	178681608	178681608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcttcacttgatcatacataAttgtgttgttgatgccaagt	7	7	3	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	178681608	178681608	A	G	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.1685	p.I562T	1.000	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	49	0	0	29	12	29.27	-	-	-	G	178681608	A	G	178681608	3	3	833	1	0	0	0	0	1	0	0	0	11704	101	4	5	1164	5	PDE11A	2	178681608	Missense_Mutation	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09	141179857	178681608	64517765	8	69754										
NFKBIZ	0	genome.wustl.edu	37	chr3	101572147	101572148	+	Frame_Shift_Ins	INS	-	-	G													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agtgtcaggacttccatggaINSgggcaggtcttttctccacc							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	101572147	101572148	-	G	INS	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	frame_shift_ins	c.777_778	p.Q260fs	0.906:0.909	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	41	0	0	20	30	60	-	-	-	G	101572148	-	G	101572147	7	5	833	1	0	1	1	0	0	0	0	0	10455	291	11	0	795	0	NFKBIZ	3	101572147	Frame_Shift_Ins	INS	-	TCGA-E9-A1NA-01A-11D-A142-09		101572147	96450283	9	69755										
NFKBIZ	0	genome.wustl.edu	37	chr3	101573907	101573907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttcctctggatatccacagaGtgcctttcaggtggcagtgg	12	10	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	101573907	101573907	G	T	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	missense	c.1445	p.S482I	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	20	0	0	21	6	22.22	-	-	-	T	101573907	G	T	101573907	3	4	833	1	0	0	0	0	1	0	0	0	10455	1043	36	4	1471	4	NFKBIZ	3	101573907	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	1760	101573907	96448523	10	69756										
TF	0	genome.wustl.edu	37	chr3	133473400	133473400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gatagtggcttccagatgaaCcagcttcgaggcaagaagtc	12	9	0	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	133473400	133473400	C	A	SNP	TF	ENST00000402696	human	ensembl	69_37n	1	known	missense	c.387	p.N129K	0.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	TF	HGNC	ENSG00000091513	38	0	0	27	6	18.18	-	-	-	A	133473400	C	A	133473400	3	1	833	1	0	0	0	0	1	0	0	0	15880	506	18	4	401	4	TF	3	133473400	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	31899493	133473400	64549030	11	69757										
ZBTB38	0	genome.wustl.edu	37	chr3	141162010	141162010	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gaagcccttgcagcgaaaccGaaaacatgccggaagccaaa	10	12	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	141162010	141162010	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	silent	c.783	p.P261	0.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	39	0	0	20	7	25.93	-	-	-	A	141162010	G	A	141162010	2	1	833	1	0	0	0	0	0	0	0	1	17635	1045	37	1		1	ZBTB38	3	141162010	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	7688610	141162010	56860420	12	69758										
ETV5	0	genome.wustl.edu	37	chr3	185774898	185774898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcagcttgaactccatgcctCgacctgtccaggcaatgaag	9	13	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	185774898	185774898	C	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.1301	p.R434Q	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	55	0	0	37	8	17.78	-	-	-	T	185774898	C	T	185774898	3	4	833	1	0	0	0	0	1	0	0	0	5319	884	31	1	369	1	ETV5	3	185774898	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	44612888	185774898	12247532	13	69759										
CLDN16	0	genome.wustl.edu	37	chr3	190105967	190105967	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gtattattcttactgcaactCaagacacctgcagcagggcg	9	11	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	190105967	190105967	C	G	SNP	CLDN16	ENST00000264734	human	ensembl	69_37n	1	known	nonsense	c.59	p.S20*	0.006	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin16,prints_Claudin	-	no_errors	CLDN16	HGNC	ENSG00000113946	39	0	0	15	14	48.28	-	-	-	G	190105967	C	G	190105967	4	3	833	1	0	0	0	0	0	1	0	0	3507	838	29	2	61	2	CLDN16	3	190105967	Nonsense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	4331069	190105967	7916463	14	69760										
BDH1	0	genome.wustl.edu	37	chr3	197249622	197249622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcggtcactgtttaggctgtCcagctccttgaccccatcat	8	14	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	197249622	197249622	C	T	SNP	BDH1	ENST00000358186	human	ensembl	69_37n	-1	known	missense	c.298	p.D100N	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	BDH1	HGNC	ENSG00000161267	43	0	0	20	22	52.38	-	-	-	T	197249622	C	T	197249622	3	4	833	1	0	0	0	0	1	0	0	0	1394	855	30	2	745	2	BDH1	3	197249622	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	7143655	197249622	772808	15	69761										
ZNF718	0	genome.wustl.edu	37	chr4	155300	155300	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	acccttaatttacataagagAattcattctgcacaaaaata	3	8	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	155300	155300	A	C	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	34	0	0	27	6	18.18	-	-	-	C	155300	A	C	155300	1	2	833	0	1	0	0	0	0	0	0	0	18216	243	9	5		5	ZNF718	4	155300	RNA	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09		155300	190998976	16	69762										
SH3D19	0	genome.wustl.edu	37	chr4	152043323	152043323	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttctccactcatccagtcatCatctacagattccagctctg	4	15	6	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	152043323	152043323	C	A	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.2293	p.D765Y	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	65	0	0	48	11	18.64	-	-	-	A	152043323	C	A	152043323	3	1	833	1	0	0	0	0	1	0	0	0	14337	826	29	2	83	2	SH3D19	4	152043323	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	151888023	152043323	39110953	17	69763										
TDO2	0	genome.wustl.edu	37	chr4	156825222	156825222	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcgaagaagacaaatcacaaActggtgtgaatagagccagc	11	8	1	4			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	156825222	156825222	A	G	SNP	TDO2	ENST00000536354	human	ensembl	69_37n	1	known	missense	c.88	p.T30A	0.108	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790	57	0	0	25	15	37.5	-	-	-	G	156825222	A	G	156825222	3	3	833	1	0	0	0	0	1	0	0	0	15822	43	2	5	94	5	TDO2	4	156825222	Missense_Mutation	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09	4781899	156825222	34329054	18	69764										
SNX25	0	genome.wustl.edu	37	chr4	186274707	186274707	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gatgggaggaaagacgccttGgctgaaccatgtttcatgtt	13	7	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	186274707	186274707	G	T	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	1	known	missense	c.2043	p.L681F	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	100	0	0	73	17	18.89	-	-	-	T	186274707	G	T	186274707	3	4	833	1	0	0	0	0	1	0	0	0	14985	1339	47	4	2097	4	SNX25	4	186274707	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	29449485	186274707	4879569	19	69765										
C6	0	genome.wustl.edu	37	chr5	41200004	41200004	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gactgggacgcaagacagatCtaactttagactgaaaggaa	11	7	1	4			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	41200004	41200004	C	A	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.311	p.R104I	0.980	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	28	0	0	13	9	40.91	-	-	-	A	41200004	C	A	41200004	3	1	833	1	0	0	0	0	1	0	0	0	2336	913	32	2	2553	2	C6	5	41200004	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		41200004	139715256	20	69766										
IQGAP2	0	genome.wustl.edu	37	chr5	75757398	75757398	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttatcctctatttctagctaTtgtggacgatgaaaggctct	8	8	3	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	75757398	75757398	T	A	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	missense	c.50	p.I17N	0.967	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	52	0	0	35	9	20.45	-	-	-	A	75757398	T	A	75757398	3	1	833	1	0	0	0	0	1	0	0	0	7869	1493	52	5	56	5	IQGAP2	5	75757398	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	34557394	75757398	105157862	21	69767										
ARSB	0	genome.wustl.edu	37	chr5	78181490	78181490	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agcttcacgagtgttggcagCcagtcagagatgtggatgag	15	7	2	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	78181490	78181490	C	A	SNP	ARSB	ENST00000264914	human	ensembl	69_37n	-1	known	missense	c.1059	p.W353C	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSB	HGNC	ENSG00000113273	24	0	0	16	5	22.73	-	-	-	A	78181490	C	A	78181490	3	1	833	1	0	0	0	0	1	0	0	0	992	740	26	4	591	4	ARSB	5	78181490	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	2424092	78181490	102733770	22	69768										
XRCC4	0	genome.wustl.edu	37	chr5	82500683	82500683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctgaccgagatccagtctatGatgagagtactgatgaggaa	12	7	1	6			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	82500683	82500683	G	A	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	missense	c.688	p.D230N	1.000	pfam_DNA_ds_break_repair_XRCC4	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	41	0	0	27	15	35.71	-	-	-	A	82500683	G	A	82500683	3	1	833	1	0	0	0	0	1	0	0	0	17552	1290	45	2	706	2	XRCC4	5	82500683	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	4319193	82500683	98414577	23	69769										
CCNH	0	genome.wustl.edu	37	chr5	86695302	86695302	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agatctgggtggttcatactTctttactaagtttctcatgc	8	8	4	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	86695302	86695302	T	A	SNP	CCNH	ENST00000256897	human	ensembl	69_37n	-1	known	nonsense	c.781	p.K261*	1.000	superfamily_Cyclin-like,pirsf_Cyclin_C/H,tigrfam_Cyclin_H	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_C/H,tigrfam_Cyclin_H	-	no_errors	CCNH	HGNC	ENSG00000134480	59	0	0	24	14	36.84	-	-	-	A	86695302	T	A	86695302	4	1	833	1	0	0	0	0	0	1	0	0	2954	1792	62	5	202	5	CCNH	5	86695302	Nonsense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	4194619	86695302	94219958	24	69770										
PCDHAC1	0	genome.wustl.edu	37	chr5	140307514	140307514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	actggacttcctgactctttCgaacccagtacctgaggacg	9	13	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	140307514	140307514	C	T	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	1	known	missense	c.1037	p.S346L	0.001	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	38	0	0	40	7	14.89	-	-	-	T	140307514	C	T	140307514	3	4	833	1	0	0	0	0	1	0	0	0	11605	893	31	1	1039	1	PCDHAC1	5	140307514	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	53612212	140307514	40607746	25	69771										
DPYSL3	0	genome.wustl.edu	37	chr5	146785290	146785290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	acggaacacagcctcagcttCcagctgcaagaaaaagtctc	8	13	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	146785290	146785290	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	missense	c.694	p.E232K	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	49	0	0	29	21	42	-	-	-	T	146785290	C	T	146785290	3	4	833	1	0	0	0	0	1	0	0	0	4783	864	30	2	1046	2	DPYSL3	5	146785290	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	6477776	146785290	34129970	26	69772										
ITPR3	0	genome.wustl.edu	37	chr6	33647763	33647763	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	cgcgacggcgtggaggaccaCagccccctcatgtaccacat	11	16	1	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	33647763	33647763	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	1	known	silent	c.4077	p.H1359	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	18	0	0	1	9	90	-	-	-	T	33647763	C	T	33647763	2	4	833	1	0	0	0	0	0	0	0	1	7976	477	17	4		4	ITPR3	6	33647763	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		33647763	137467304	27	69773										
SLC22A7	0	genome.wustl.edu	37	chr6	43269378	43269378	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gaagaccttcatacctagacCtgttccgcacaccacggctc	7	16	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	43269378	43269378	C	T	SNP	SLC22A7	ENST00000372585	human	ensembl	69_37n	1	known	silent	c.1009	p.L337	0.999	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204	15	0	0	8	9	52.94	-	-	-	T	43269378	C	T	43269378	2	4	833	1	0	0	0	0	0	0	0	1	14548	680	24	4		4	SLC22A7	6	43269378	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	9621615	43269378	127845689	28	69774										
RIMS1	0	genome.wustl.edu	37	chr6	72889545	72889545	+	Frame_Shift_Del	DEL	C	C	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	acaggagcaaaggggctgagCcctcgcagcaagccttgggg							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	72889545	72889545	C	-	DEL	RIMS1	ENST00000521978	human	ensembl	69_37n	1	known	frame_shift_del	c.739	p.S248fs	0.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	20	0	0	5	2	28.57	-	-	-	-	72889545	C	-	72889545	7	5	833	1	0	1	0	1	0	0	0	0	13453	739	26	0	757	0	RIMS1	6	72889545	Frame_Shift_Del	DEL	C	TCGA-E9-A1NA-01A-11D-A142-09	29620167	72889545	98225522	29	69775										
RAET1G	0	genome.wustl.edu	37	chr6	150239333	150239333	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcactccaaaggactctcctCagcagccaggtaggatgaag	10	12	3	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	150239333	150239333	C	G	SNP	RAET1G	ENST00000367360	human	ensembl	69_37n	-1	known	silent	c.819	p.L273	0.000	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1G	HGNC	ENSG00000203722	83	0	0	153	45	22.61	-	-	-	G	150239333	C	G	150239333	2	3	833	1	0	0	0	0	0	0	0	1	13083	813	29	2		2	RAET1G	6	150239333	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	77349788	150239333	20875734	30	69776										
SDK1	0	genome.wustl.edu	37	chr7	4153064	4153064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgagaccagcctgcggcttcGctgggtggtgagtgggggtg	20	8	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	4153064	4153064	G	A	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.3578	p.R1193H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	20	0	0	12	8	40	-	-	-	A	4153064	G	A	4153064	3	1	833	1	0	0	0	0	1	0	0	0	14056	1087	38	1	3672	1	SDK1	7	4153064	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09		4153064	154985599	31	69777										
DNAH11	0	genome.wustl.edu	37	chr7	21920374	21920374	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttaaaagcatccttttttctCtctgctacttccacgcctgt	4	13	2	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	21920374	21920374	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.12271	p.L4091F	0.984	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	75	0	0	38	9	19.15	-	-	-	T	21920374	C	T	21920374	3	4	833	1	0	0	0	0	1	0	0	0	4635	913	32	2	12570	2	DNAH11	7	21920374	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	17767310	21920374	137218289	32	69778										
HECW1	0	genome.wustl.edu	37	chr7	43546786	43546786	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ccccctaccgaagagactttGaggccaagctccgcaatttc	8	15	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	43546786	43546786	G	C	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.3682	p.E1228Q	1.000	superfamily_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	63	0	0	31	13	29.55	-	-	-	C	43546786	G	C	43546786	3	2	833	1	0	0	0	0	1	0	0	0	7093	1291	45	2	3760	2	HECW1	7	43546786	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	21626412	43546786	115591877	33	69779										
IQUB	0	genome.wustl.edu	37	chr7	123150084	123150084	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcccactggaataagtacaaCttttactgtaaattaaatag	6	7	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	123150084	123150084	C	G	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	missense	c.403	p.V135L	0.993	pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	26	0	0	12	4	25	-	-	-	G	123150084	C	G	123150084	3	3	833	1	0	0	0	0	1	0	0	0	7874	565	20	4	2016	4	IQUB	7	123150084	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	79603298	123150084	35988579	34	69780										
MGAM	0	genome.wustl.edu	37	chr7	141786092	141786092	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gtggaggatgacgtcttcatCaagtacccaaatgatggaga	12	7	3	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	141786092	141786092	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.6714	p.I2238	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	39	0	0	17	8	32	-	-	-	T	141786092	C	T	141786092	2	4	833	1	0	0	0	0	0	0	0	1	9612	841	29	2		2	MGAM	7	141786092	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	18636008	141786092	17352571	35	69781										
OSR2	0	genome.wustl.edu	37	chr8	99961516	99961516	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctcccagccctgcacaaggaCcggccccgttttgactttgc	9	17	0	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	99961516	99961516	C	G	SNP	OSR2	ENST00000457907	human	ensembl	69_37n	1	known	missense	c.699	p.D233E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	28	0	0	13	4	23.53	-	-	-	G	99961516	C	G	99961516	3	3	833	1	0	0	0	0	1	0	0	0	11367	506	18	4	338	4	OSR2	8	99961516	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		99961516	46402506	36	69782										
OC90	0	genome.wustl.edu	37	chr8	133058114	133058114	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcctgtggaagatgtggagtGtccagaggatggcctcctat	14	8	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	133058114	133058114	G	A	SNP	OC90	ENST00000443356	human	ensembl	69_37n	-1	known	silent	c.63	p.D21	1.000	NULL	pfam_PLipase_A2_euk,superfamily_PLipase_A2,smart_PLipase_A2,prints_PLipase_A2_euk	-	no_errors	OC90	HGNC	ENSG00000253117	88	0	0	50	18	26.47	-	-	-	A	133058114	G	A	133058114	2	1	833	1	0	0	0	0	0	0	0	1	10887	1368	48	4		4	OC90	8	133058114	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	33096598	133058114	13305908	37	69783										
PHF20L1	0	genome.wustl.edu	37	chr8	133849986	133849986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgcttgtgttggcaacacagCgtgtgcatggggctgctgga	16	8	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	133849986	133849986	C	T	SNP	PHF20L1	ENST00000220847	human	ensembl	69_37n	1	known	silent	c.282	p.S94	0.652	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	73	0	0	39	24	38.1	-	-	-	T	133849986	C	T	133849986	2	4	833	1	0	0	0	0	0	0	0	1	11906	767	27	1		1	PHF20L1	8	133849986	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	791872	133849986	12514036	38	69784										
ASPN	0	genome.wustl.edu	37	chr9	95227293	95227293	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gctctatcccattattatcaAgagggtttgcactcatttct	6	10	4	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	95227293	95227293	A	T	SNP	ASPN	ENST00000375544	human	ensembl	69_37n	-1	known	missense	c.620	p.L207H	1.000	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819	40	0	0	22	9	29.03	-	-	-	T	95227293	A	T	95227293	3	4	833	1	0	0	0	0	1	0	0	0	1061	72	3	5	538	5	ASPN	9	95227293	Missense_Mutation	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09		95227293	45986138	39	69785										
GRIN3A	0	genome.wustl.edu	37	chr9	104375772	104375772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	attagctcggatatgttggcGgtcaatggagagttgggtgg	17	4	1	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	104375772	104375772	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	silent	c.2652	p.T884	0.999	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	44	0	0	33	4	10.81	-	-	-	A	104375772	G	A	104375772	2	1	833	1	0	0	0	0	0	0	0	1	6834	1103	39	1		1	GRIN3A	9	104375772	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	9148479	104375772	36837659	40	69786										
MED22	0	genome.wustl.edu	37	chr9	136212104	136212104	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgacacctgcgtctcgtcctCaatctgggggaaaacaagaa	10	11	3	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	136212104	136212104	C	G	SNP	MED22	ENST00000343730	human	ensembl	69_37n	-1	known	missense	c.127	p.E43Q	1.000	NULL	NULL	-	no_errors	MED22	HGNC	ENSG00000148297	29	0	0	5	7	58.33	-	-	-	G	136212104	C	G	136212104	3	3	833	1	0	0	0	0	1	0	0	0	9511	835	29	2	497	2	MED22	9	136212104	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	31836332	136212104	5001327	41	69787										
GATA3	0	genome.wustl.edu	37	chr10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tctggaggaggaatgccaatINSggggaccctgtctgcaatgc							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	8111513	8111514	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	44	0	0	31	7	18.42	-	-	-	G	8111514	-	G	8111513	7	5	833	1	0	1	1	0	0	0	0	0	6305	1461	51	0	1016	0	GATA3	10	8111513	Frame_Shift_Ins	INS	-	TCGA-E9-A1NA-01A-11D-A142-09		8111513	127423234	42	69788										
NRG3	0	genome.wustl.edu	37	chr10	84711230	84711232	+	In_Frame_Del	DEL	GAA	GAA	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttttcaaattcacagagagtGaagaagtttatcaaaggcag							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	84711230	84711232	GAA	-	DEL	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	in_frame_del	c.1060_1062	p.E355in_frame_del	1.000:1.000:1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	61	0	0	51	8	13.56	-	-	-	-	84711232	GAA	-	84711230	7	5	833	1	0	1	0	1	0	0	0	0	10722	1291	45	0	1246	0	NRG3	10	84711230	In_Frame_Del	DEL	GAA	TCGA-E9-A1NA-01A-11D-A142-09	76599717	84711230	50823517	43	69789										
MYOF	0	genome.wustl.edu	37	chr10	95069836	95069836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gataagcaggaacagcaagcCgatgatgacccacttaaagc	10	10	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	95069836	95069836	C	T	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.6088	p.G2030S	0.825	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	35	0	0	16	5	23.81	-	-	-	T	95069836	C	T	95069836	3	4	833	1	0	0	0	0	1	0	0	0	10161	652	23	1	105	1	MYOF	10	95069836	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	10358606	95069836	40464911	44	69790										
CRTAC1	0	genome.wustl.edu	37	chr10	99655137	99655137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	aaaggccccaaaccgggtgcGtggcaccactcgcagccagt	12	15	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	99655137	99655137	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	69_37n	-1	known	missense	c.1351	p.R451C	0.965	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	-	no_errors	CRTAC1	HGNC	ENSG00000095713	23	0	0	15	7	31.82	-	-	-	A	99655137	G	A	99655137	3	1	833	1	0	0	0	0	1	0	0	0	3926	1145	40	1	654	1	CRTAC1	10	99655137	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	4585301	99655137	35879610	45	69791										
FGFR2	0	genome.wustl.edu	37	chr10	123247597	123247597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	attgttttctgttaccaaaaCatttctggctgctaaatctc	5	9	3	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	123247597	123247597	C	T	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1897	p.V633I	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	72	0	0	41	8	16.33	-	-	-	T	123247597	C	T	123247597	3	4	833	1	0	0	0	0	1	0	0	0	5912	478	17	4	695	4	FGFR2	10	123247597	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	23592460	123247597	12287150	46	69792										
SLC17A6	0	genome.wustl.edu	37	chr11	22397628	22397628	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcagtgggattcagtggattTgctatatctggtaagatata	12	4	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	22397628	22397628	T	A	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	missense	c.1275	p.F425L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	52	0	0	14	15	51.72	-	-	-	A	22397628	T	A	22397628	3	1	833	1	0	0	0	0	1	0	0	0	14510	1809	63	5	1313	5	SLC17A6	11	22397628	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09		22397628	112608888	47	69793										
OR4A5	0	genome.wustl.edu	37	chr11	51412084	51412084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	aagacctcagccccaccaaaGaaatggtctataaatagctg	7	11	2	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	51412084	51412084	G	A	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	silent	c.312	p.F104	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	43	0	0	28	11	28.21	-	-	-	A	51412084	G	A	51412084	2	1	833	1	0	0	0	0	0	0	0	1	11116	933	33	2		2	OR4A5	11	51412084	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	29014456	51412084	83594432	48	69794										
SSRP1	0	genome.wustl.edu	37	chr11	57093910	57093910	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ggatcctgacgctgagtcctCtgagctggggggagtactgg	17	9	1	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	57093910	57093910	C	G	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	missense	c.2101	p.E701Q	1.000	NULL	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136	44	0	0	37	6	13.95	-	-	-	G	57093910	C	G	57093910	3	3	833	1	0	0	0	0	1	0	0	0	15285	922	32	2	32	2	SSRP1	11	57093910	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	5681826	57093910	77912606	49	69795										
KDM2A	0	genome.wustl.edu	37	chr11	67018032	67018032	+	Frame_Shift_Del	DEL	C	C	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcagcactgcccagcccgaaCcccccagcgtggggatgagg							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	67018032	67018032	C	-	DEL	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	frame_shift_del	c.2531	p.Q846fs	0.890	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	31	0	0	18	2	10	-	-	-	-	67018032	C	-	67018032	7	5	833	1	0	1	0	1	0	0	0	0	8178	507	18	0	2593	0	KDM2A	11	67018032	Frame_Shift_Del	DEL	C	TCGA-E9-A1NA-01A-11D-A142-09	9924122	67018032	67988484	50	69796										
OR2AT4	0	genome.wustl.edu	37	chr11	74800231	74800231	+	Frame_Shift_Del	DEL	A	A	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	aagcagtggtagatgtaggcAatgctgttatatgccatctg							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	74800231	74800231	A	-	DEL	OR2AT4	ENST00000305159	human	ensembl	69_37n	-1	known	frame_shift_del	c.528	p.I176fs	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561	44	0	0	59	12	16.67	-	-	-	-	74800231	A	-	74800231	7	5	833	1	0	1	0	1	0	0	0	0	11060	126	5	0	437	0	OR2AT4	11	74800231	Frame_Shift_Del	DEL	A	TCGA-E9-A1NA-01A-11D-A142-09	7782199	74800231	60206285	51	69797										
PANX3	0	genome.wustl.edu	37	chr11	124481538	124481538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	accccgcctcaaaggactgcGtctggaactgcccctggacc	10	17	2	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	124481538	124481538	G	A	SNP	PANX3	ENST00000284288	human	ensembl	69_37n	1	known	missense	c.86	p.R29H	0.966	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143	47	0	0	8	21	72.41	-	-	-	A	124481538	G	A	124481538	3	1	833	1	0	0	0	0	1	0	0	0	11495	1145	40	1	88	1	PANX3	11	124481538	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	49681307	124481538	10524978	52	69798										
ACVRL1	0	genome.wustl.edu	37	chr12	52307765	52307765	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tccgtacccccaggacctccTggacagtgactgcaccacag	9	17	0	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	52307765	52307765	T	G	SNP	ACVRL1	ENST00000550683	human	ensembl	69_37n	1	known	missense	c.575	p.L192R	0.998	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVRL1	HGNC	ENSG00000139567	41	0	0	19	11	36.67	-	-	-	G	52307765	T	G	52307765	3	3	833	1	0	0	0	0	1	0	0	0	225	1580	55	5	547	5	ACVRL1	12	52307765	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09		52307765	81544130	53	69799										
SMARCC2	0	genome.wustl.edu	37	chr12	56580003	56580003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcacaaggagcctcccgcttTgaaatctaggaaacatttga	9	10	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	56580003	56580003	T	C	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.253	p.K85E	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	43	0	0	37	7	15.91	-	-	-	C	56580003	T	C	56580003	3	2	833	1	0	0	0	0	1	0	0	0	14865	1821	63	5	3592	5	SMARCC2	12	56580003	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	4272238	56580003	77271892	54	69800										
NAV3	0	genome.wustl.edu	37	chr12	78530992	78530992	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgtctcagtttaaccttcccGggcccagcatgatgcgctca	9	14	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	78530992	78530992	G	C	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.4477	p.G1493R	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	89	0	0	51	19	27.14	-	-	-	C	78530992	G	C	78530992	3	2	833	1	0	0	0	0	1	0	0	0	10257	1116	39	3	4551	3	NAV3	12	78530992	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	21950989	78530992	55320903	55	69801										
OAS2	0	genome.wustl.edu	37	chr12	113435403	113435403	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	cggtgtatgcctgggaacagGggtgcagaaaagacaacttt	14	7	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	113435403	113435403	G	T	SNP	OAS2	ENST00000342315	human	ensembl	69_37n	1	known	missense	c.706	p.G236W	0.909	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	42	0	0	21	11	34.38	-	-	-	T	113435403	G	T	113435403	3	4	833	1	0	0	0	0	1	0	0	0	10873	1232	43	4	791	4	OAS2	12	113435403	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	34904411	113435403	20416492	56	69802										
GALNT9	0	genome.wustl.edu	37	chr12	132685719	132685719	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	cctcatctccgggtacacgtTctccaggtaccacttgaagc	8	15	3	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	132685719	132685719	T	G	SNP	GALNT9	ENST00000328957	human	ensembl	69_37n	-1	known	missense	c.1351	p.N451H	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT9	HGNC	ENSG00000182870	34	0	0	12	12	50	-	-	-	G	132685719	T	G	132685719	3	3	833	1	0	0	0	0	1	0	0	0	6270	1783	62	5	476	5	GALNT9	12	132685719	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	19250316	132685719	1166176	57	69803										
MTMR6	0	genome.wustl.edu	37	chr13	25831915	25831915	+	Frame_Shift_Del	DEL	G	G	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	atccataacagctttgatatGgcgaagccatcccgagctct							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	13	25831915	25831915	G	-	DEL	MTMR6	ENST00000381801	human	ensembl	69_37n	-1	known	frame_shift_del	c.928	p.H310fs	1.000	smart_Tyr_Pase_cat	pfam_Myotub-related,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505	64	0	0	16	2	11.11	-	-	-	-	25831915	G	-	25831915	7	5	833	1	0	1	0	1	0	0	0	0	10019	1348	47	0	965	0	MTMR6	13	25831915	Frame_Shift_Del	DEL	G	TCGA-E9-A1NA-01A-11D-A142-09		25831915	89337963	58	69804										
ATP11A	0	genome.wustl.edu	37	chr13	113481187	113481187	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctggtgaacacgtcggacctCaatgaagagctgggacaggt	14	9	1	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	13	113481187	113481187	C	A	SNP	ATP11A	ENST00000418678	human	ensembl	69_37n	1	novel	nonsense	c.1127	p.S376*	0.093	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP11A	HGNC	ENSG00000068650	45	0	0	23	8	25.81	-	-	-	A	113481187	C	A	113481187	4	1	833	1	0	0	0	0	0	1	0	0	1123	813	29	2	1249	2	ATP11A	13	113481187	Nonsense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	87649272	113481187	1688691	59	69805										
NID2	0	genome.wustl.edu	37	chr14	52493941	52493941	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gtgcactggtgcccatcgccGgcataaccaggcaggcaggc	14	14	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	14	52493941	52493941	G	A	SNP	NID2	ENST00000216286	human	ensembl	69_37n	-1	known	silent	c.2652	p.A884	0.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303	16	0	0	8	4	33.33	-	-	-	A	52493941	G	A	52493941	2	1	833	1	0	0	0	0	0	0	0	1	10487	1103	39	1		1	NID2	14	52493941	Silent	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09		52493941	54855599	60	69806										
MYO9A	0	genome.wustl.edu	37	chr15	72320073	72320073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	cacaaataaaaatacgtaccGttcattatgctcctgataaa	4	9	1	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	72320073	72320073	G	A	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.997	p.R333W	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	51	0	0	39	29	42.65	-	-	-	A	72320073	G	A	72320073	3	1	833	1	0	0	0	0	1	0	0	0	10156	1159	40	1	6805	1	MYO9A	15	72320073	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09		72320073	30211319	61	69807										
BTBD1	0	genome.wustl.edu	37	chr15	83686848	83686848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	aaatatgatttctggaatttGtccatcttctattgaagtgc	7	6	3	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	83686848	83686848	G	T	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	missense	c.1420	p.Q474K	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	38	0	0	23	5	17.86	-	-	-	T	83686848	G	T	83686848	3	4	833	1	0	0	0	0	1	0	0	0	1545	1386	48	4	32	4	BTBD1	15	83686848	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	11366775	83686848	18844544	62	69808										
ACSM5	0	genome.wustl.edu	37	chr16	20422836	20422836	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tggctgagacacctagtcctCcaggcactgaggaactccag	11	13	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	20422836	20422836	C	A	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	silent	c.30	p.L10	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	34	0	0	20	21	51.22	-	-	-	A	20422836	C	A	20422836	2	1	833	1	0	0	0	0	0	0	0	1	187	842	30	2		2	ACSM5	16	20422836	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		20422836	69931917	63	69809										
ACD	0	genome.wustl.edu	37	chr16	67694153	67694153	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tacacccagcggatgcaacgGgcccgggtttcccgcgggcg	15	15	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	67694153	67694153	G	C	SNP	ACD	ENST00000219251	human	ensembl	69_37n	-1	known	missense	c.229	p.P77A	0.000	NULL	pfam_Telomere_Pot1	-	no_errors	ACD	HGNC	ENSG00000102977	13	0	0	11	4	26.67	-	-	-	C	67694153	G	C	67694153	3	2	833	1	0	0	0	0	1	0	0	0	135	1232	43	4	1453	4	ACD	16	67694153	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	47271317	67694153	22660600	64	69810										
AP1G1	0	genome.wustl.edu	37	chr16	71805063	71805063	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	atccaaattacattaccatgGttcttctcattcaataaatt	2	9	3	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	71805063	71805063	G	T	SNP	AP1G1	ENST00000433195	human	ensembl	69_37n	-1	known	missense	c.630	p.N210K	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747	66	0	0	39	32	45.07	-	-	-	T	71805063	G	T	71805063	3	4	833	1	0	0	0	0	1	0	0	0	733	1252	44	4	1996	4	AP1G1	16	71805063	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	4110910	71805063	18549690	65	69811										
CDK10	0	genome.wustl.edu	37	chr16	89753195	89753195	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gggcttcttcacggtgcctcCggaacacagggtgcgcgggg	17	12	2	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	89753195	89753195	C	G	SNP	CDK10	ENST00000353379	human	ensembl	69_37n	1	known	missense	c.77	p.P26R	0.995	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK10	HGNC	ENSG00000185324	30	0	0	14	6	30	-	-	-	G	89753195	C	G	89753195	3	3	833	1	0	0	0	0	1	0	0	0	3154	652	23	3	79	3	CDK10	16	89753195	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	17948132	89753195	601558	66	69812										
DHRS13	0	genome.wustl.edu	37	chr17	27228573	27228573	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gaaaggcagtggcaaaggccCgcaccgaggccagactggcc	15	13	0	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	17	27228573	27228573	C	G	SNP	DHRS13	ENST00000378895	human	ensembl	69_37n	-1	known	missense	c.308	p.R103P	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	26	0	0	18	8	30.77	-	-	-	G	27228573	C	G	27228573	3	3	833	1	0	0	0	0	1	0	0	0	4525	652	23	3	837	3	DHRS13	17	27228573	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		27228573	53966637	67	69813										
LAMA1	0	genome.wustl.edu	37	chr18	6993719	6993719	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	attctctcagttgccctattCaccttttgggtactcgctaa	6	12	3	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	6993719	6993719	C	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.4929	p.V1643	0.001	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	65	0	0	29	17	36.96	-	-	-	A	6993719	C	A	6993719	2	1	833	1	0	0	0	0	0	0	0	1	8659	813	29	2		2	LAMA1	18	6993719	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		6993719	71083529	68	69814										
SLC39A6	0	genome.wustl.edu	37	chr18	33691125	33691125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgaaaattcctgttgccattCcaagatacgccagcatggct	8	11	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	33691125	33691125	C	A	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	missense	c.2012	p.G671V	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	43	0	0	105	14	11.76	-	-	-	A	33691125	C	A	33691125	3	1	833	1	0	0	0	0	1	0	0	0	14711	855	30	2	275	2	SLC39A6	18	33691125	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	26697406	33691125	44386123	69	69815										
TSHZ1	0	genome.wustl.edu	37	chr18	72998785	72998785	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tcccactaccgcccaccaccCacacgcggctgccggcctcc	7	24	0	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	72998785	72998785	C	G	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	missense	c.1423	p.H475D	0.879	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	24	0	0	10	9	47.37	-	-	-	G	72998785	C	G	72998785	3	3	833	1	0	0	0	0	1	0	0	0	16719	594	21	4	1290	4	TSHZ1	18	72998785	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	39307660	72998785	5078463	70	69816										
DAZAP1	0	genome.wustl.edu	37	chr19	1432662	1432662	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgagcaagcccccgacagctCagccagacttcccctatggt	9	16	1	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	1432662	1432662	C	T	SNP	DAZAP1	ENST00000233078	human	ensembl	69_37n	1	known	nonsense	c.1021	p.Q341*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626	23	0	0	11	10	47.62	-	-	-	T	1432662	C	T	1432662	4	4	833	1	0	0	0	0	0	1	0	0	4276	827	29	2	1063	2	DAZAP1	19	1432662	Nonsense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		1432662	57696321	71	69817										
RAX2	0	genome.wustl.edu	37	chr19	3771698	3771698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctcctcgcccggccccagacCcccaccctcggttgccggcc	9	24	0	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	3771698	3771698	C	T	SNP	RAX2	ENST00000555978	human	ensembl	69_37n	-1	known	missense	c.43	p.G15S	0.003	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RAX2	HGNC	ENSG00000173976	32	0	0	14	7	33.33	-	-	-	T	3771698	C	T	3771698	3	4	833	1	0	0	0	0	1	0	0	0	13180	623	22	4	519	4	RAX2	19	3771698	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	2339036	3771698	55357285	72	69818										
ZSWIM4	0	genome.wustl.edu	37	chr19	13934173	13934173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tacccaggctgcccatactgGagacagcatttcctgctgga	10	13	0	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	13934173	13934173	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.1723	p.E575K	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	25	0	0	20	9	31.03	-	-	-	A	13934173	G	A	13934173	3	1	833	1	0	0	0	0	1	0	0	0	18334	1175	41	2	1761	2	ZSWIM4	19	13934173	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	10162475	13934173	45194810	73	69819										
SLC5A5	0	genome.wustl.edu	37	chr19	18004631	18004631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gctggagggggctggctcttGgaccccctgtgttggacatg	17	10	1	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	18004631	18004631	G	T	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	missense	c.1877	p.W626L	0.079	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	42	0	0	51	8	13.56	-	-	-	T	18004631	G	T	18004631	3	4	833	1	0	0	0	0	1	0	0	0	14757	1357	47	4	1935	4	SLC5A5	19	18004631	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	4070458	18004631	41124352	74	69820										
ZNF829	0	genome.wustl.edu	37	chr19	37398926	37398926	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctggcttagaattggaaagtCctgttcacaagaaaagacat	9	7	1	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	37398926	37398926	C	G	SNP	ZNF829	ENST00000520965	human	ensembl	69_37n	-1	known	missense	c.467	p.G156A	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	70	0	0	41	16	28.07	-	-	-	G	37398926	C	G	37398926	3	3	833	1	0	0	0	0	1	0	0	0	18275	869	30	2	1082	2	ZNF829	19	37398926	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	19394295	37398926	21730057	75	69821										
TSKS	0	genome.wustl.edu	37	chr19	50266424	50266424	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tctgggactagctgggagcaGctctccacccccgtgggggt	15	13	2	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	50266424	50266424	G	C	SNP	TSKS	ENST00000246801	human	ensembl	69_37n	-1	known	missense	c.81	p.S27R	0.012	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467	22	0	0	13	10	43.48	-	-	-	C	50266424	G	C	50266424	3	2	833	1	0	0	0	0	1	0	0	0	16722	962	34	4	1741	4	TSKS	19	50266424	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	12867498	50266424	8862559	76	69822										
POLD1	0	genome.wustl.edu	37	chr19	50905959	50905959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ggcagcgcattgcgcccttgCgcgtgctcagcttcgatatc	12	14	1	0			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	50905959	50905959	C	T	SNP	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	missense	c.931	p.R311C	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	14	0	0	3	4	57.14	-	-	-	T	50905959	C	T	50905959	3	4	833	1	0	0	0	0	1	0	0	0	12264	768	27	1	957	1	POLD1	19	50905959	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	639535	50905959	8223024	77	69823										
NLRP4	0	genome.wustl.edu	37	chr19	56372911	56372911	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agctgtcgccttcagaagctTgggtgagttgagaatcgact	13	8	1	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	56372911	56372911	T	G	SNP	NLRP4	ENST00000589437	human	ensembl	69_37n	1	novel	missense	c.713	p.L238W	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRP4	HGNC	ENSG00000160505	19	0	0	20	12	37.5	-	-	-	G	56372911	T	G	56372911	3	3	833	1	0	0	0	0	1	0	0	0	10551	1799	63	5	2026	5	NLRP4	19	56372911	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	5466952	56372911	2756072	78	69824										
ZNF418	0	genome.wustl.edu	37	chr19	58437604	58437604	+	Frame_Shift_Del	DEL	A	A	-													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgattttccacattcactgcActcataaggcctttctccag							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	58437604	58437604	A	-	DEL	ZNF418	ENST00000425570	human	ensembl	69_37n	-1	known	frame_shift_del	c.2008	p.C670fs	0.254	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724	66	0	0	44	11	20	-	-	-	-	58437604	A	-	58437604	7	5	833	1	0	1	0	1	0	0	0	0	17991	159	6	0	89	0	ZNF418	19	58437604	Frame_Shift_Del	DEL	A	TCGA-E9-A1NA-01A-11D-A142-09	2064693	58437604	691379	79	69825										
PDYN	0	genome.wustl.edu	37	chr20	1961172	1961172	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gtccccctccccagccacctCtgagctcctcttggggtatt	8	18	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	20	1961172	1961172	C	G	SNP	PDYN	ENST00000217305	human	ensembl	69_37n	-1	known	missense	c.562	p.E188Q	0.998	NULL	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327	50	0	0	24	16	40	-	-	-	G	1961172	C	G	1961172	3	3	833	1	0	0	0	0	1	0	0	0	11772	922	32	2	206	2	PDYN	20	1961172	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09		1961172	61064348	80	69826										
NOP56	0	genome.wustl.edu	37	chr20	2636061	2636061	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	gcccagtttattggaaaccgAagggaactgaatgaggacaa	12	7	0	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	20	2636061	2636061	A	G	SNP	NOP56	ENST00000329276	human	ensembl	69_37n	1	known	silent	c.660	p.R220	0.423	NULL	pfam_SnoRNA-bd_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP56	HGNC	ENSG00000101361	50	0	0	32	9	21.95	-	-	-	G	2636061	A	G	2636061	2	3	833	1	0	0	0	0	0	0	0	1	10611	233	9	5		5	NOP56	20	2636061	Silent	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09	674889	2636061	60389459	81	69827										
MXRA5	0	genome.wustl.edu	37	chrX	3241188	3241188	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	tgctcttcttcaccaagtagAggtacatctgctgaggattc	9	10	4	2			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	3241188	3241188	A	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.2538	p.P846	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	59	0	0	26	14	35	-	-	-	C	3241188	A	C	3241188	2	2	833	1	0	0	0	0	0	0	0	1	10075	291	11	5		5	MXRA5	23	3241188	Silent	SNP	A	TCGA-E9-A1NA-01A-11D-A142-09		3241188	152029372	82	69828										
MAGEE1	0	genome.wustl.edu	37	chrX	75651135	75651135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agcagtacagggaggcaatgGaagatgaggccaatagagct	15	6	0	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	75651135	75651135	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	missense	c.2812	p.E938K	0.995	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	44	0	0	25	6	19.35	-	-	-	A	75651135	G	A	75651135	3	1	833	1	0	0	0	0	1	0	0	0	9256	1175	41	2	2814	2	MAGEE1	23	75651135	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	72409947	75651135	79619425	83	69829										
LRCH2	0	genome.wustl.edu	37	chrX	114357648	114357648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agcaatctgacttacgttgcGaagttgtcgtatttgctctc	9	9	2	1			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	114357648	114357648	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.1957	p.R653C	1.000	superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	68	0	0	50	24	32.43	-	-	-	A	114357648	G	A	114357648	3	1	833	1	0	0	0	0	1	0	0	0	8999	1058	37	1	356	1	LRCH2	23	114357648	Missense_Mutation	SNP	G	TCGA-E9-A1NA-01A-11D-A142-09	38706513	114357648	40912912	84	69830										
GRIA3	0	genome.wustl.edu	37	chrX	122387187	122387187	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ctcgagaggggtgtatgccaTctttggattctatgaccaga	12	8	2	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	122387187	122387187	T	C	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.302	p.I101T	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	77	0	0	42	17	28.81	-	-	-	C	122387187	T	C	122387187	3	2	833	1	0	0	0	0	1	0	0	0	6820	1435	50	5	312	5	GRIA3	23	122387187	Missense_Mutation	SNP	T	TCGA-E9-A1NA-01A-11D-A142-09	8029539	122387187	32883373	85	69831										
IGSF1	0	genome.wustl.edu	37	chrX	130410058	130410058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	agtgtggagaaggaagtcagCtgagttccctgagacactcc	13	9	1	3			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	130410058	130410058	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2788	p.A930T	0.953	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	25	0	0	18	7	28	-	-	-	T	130410058	C	T	130410058	3	4	833	1	0	0	0	0	1	0	0	0	7650	797	28	4	1261	4	IGSF1	23	130410058	Missense_Mutation	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	8022871	130410058	24860502	86	69832										
GPR112	0	genome.wustl.edu	37	chrX	135441470	135441471	+	Frame_Shift_Ins	INS	-	-	T													0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	ttgtgtttgtcaggtcatcaINStaaaagccagctcttcctta							TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	135441470	135441471	-	T	INS	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	frame_shift_ins	c.7000_7001	p.A2336fs	0.952:0.996	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	57	0	0	32	18	36	-	-	-	T	135441471	-	T	135441470	7	5	833	1	0	1	1	0	0	0	0	0	6679	217	8	0	7030	0	GPR112	23	135441470	Frame_Shift_Ins	INS	-	TCGA-E9-A1NA-01A-11D-A142-09	5031412	135441470	19829090	87	69833										
MAGEC1	0	genome.wustl.edu	37	chrX	140995860	140995860	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	11	0.157387823340194	1.75114942528736	2.6864224137931	1.23513674197384	1	1	0	accttgctagagagtgattcCttgacagacagcgagtcctt	10	10	0	4			TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	140995860	140995860	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	1	known	silent	c.2670	p.S890	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	50	0	0	21	8	27.59	-	-	-	A	140995860	C	A	140995860	2	1	833	1	0	0	0	0	0	0	0	1	9251	668	24	4		4	MAGEC1	23	140995860	Silent	SNP	C	TCGA-E9-A1NA-01A-11D-A142-09	5554390	140995860	14274700	88	69834										
DFFB	0	genome.wustl.edu	37	chr1	3775374	3775375	+	Frame_Shift_Ins	INS	-	-	T													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttcccgacaacgccgagctgINSgtgctgctcaccttgggcca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	3775374	3775375	-	T	INS	DFFB	ENST00000378209	human	ensembl	69_37n	1	known	frame_shift_ins	c.207_208	p.V69fs	0.017:0.019	pfam_CAD,smart_CAD,pfscan_CAD	pfam_Apoptosis_DFF40,pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	DFFB	HGNC	ENSG00000169598	26	0	0	24	19	44.19	-	-	-	T	3775375	-	T	3775374	7	5	834	1	0	1	1	0	0	0	0	0	4489	1335	47	0	213	0	DFFB	1	3775374	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		3775374	245475247	1	69835										
ECE1	0	genome.wustl.edu	37	chr1	21551856	21551856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gtactgctctaccatgcactCggtctgacgcttgaaggcct	10	13	2	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	21551856	21551856	C	T	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.1927	p.E643K	0.995	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	58	0	0	25	5	16.67	-	-	-	T	21551856	C	T	21551856	3	4	834	1	0	0	0	0	1	0	0	0	4924	893	31	1	397	1	ECE1	1	21551856	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	17776482	21551856	227698765	2	69836										
COL16A1	0	genome.wustl.edu	37	chr1	32133775	32133776	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ccttactcacaggcagtcctINSggggggcccgtggcacctgg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	32133775	32133776	-	G	INS	COL16A1	ENST00000271069	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3294_3293	p.G1099fs	0.539:0.989	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	28	0	0	13	2	13.33	-	-	-	G	32133776	-	G	32133775	7	5	834	1	0	1	1	0	0	0	0	0	3703	1567	55	0	1604	0	COL16A1	1	32133775	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	10581919	32133775	217116846	3	69837										
COL9A2	0	genome.wustl.edu	37	chr1	40770036	40770037	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ccttggggccctggaattccINSgggggggccctgctccccct							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	40770036	40770037	-	G	INS	COL9A2	ENST00000372748	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1243_1242	p.G414fs	1.000:0.001	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A2	HGNC	ENSG00000049089	34	0	0	27	3	10	-	-	-	G	40770037	-	G	40770036	7	5	834	1	0	1	1	0	0	0	0	0	3738	661	23	0	862	0	COL9A2	1	40770036	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	8636261	40770036	208480585	4	69838										
DPH2	0	genome.wustl.edu	37	chr1	44435938	44435938	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ctcctcttccggacctggacGgagtgtacgagctggagcga	14	12	1	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	44435938	44435938	G	T	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	1	known	nonsense	c.91	p.G31*	0.779	tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	42	0	0	42	7	14.29	-	-	-	T	44435938	G	T	44435938	4	4	834	1	0	0	0	0	0	1	0	0	4755	1117	39	3	93	3	DPH2	1	44435938	Nonsense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	3665902	44435938	204814683	5	69839										
GBP7	0	genome.wustl.edu	37	chr1	89630532	89630532	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cagacttcactgtgcagcccAgagggaagccttcaagggaa	12	11	2	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	89630532	89630532	A	T	SNP	GBP7	ENST00000294671	human	ensembl	69_37n	-1	known	missense	c.200	p.L67Q	0.173	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP7	HGNC	ENSG00000213512	42	0	0	68	15	18.07	-	-	-	T	89630532	A	T	89630532	3	4	834	1	0	0	0	0	1	0	0	0	6329	188	7	5	1752	5	GBP7	1	89630532	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	45194594	89630532	159620089	6	69840										
ADCY10	0	genome.wustl.edu	37	chr1	167830215	167830215	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ctttataatgtttacaagtgTctaggcctaggacattggcc	9	8	1	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	167830215	167830215	T	G	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.1703	p.D568A	0.582	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	135	0	0	261	55	17.41	-	-	-	G	167830215	T	G	167830215	3	3	834	1	0	0	0	0	1	0	0	0	293	1667	58	5	3205	5	ADCY10	1	167830215	Missense_Mutation	SNP	T	TCGA-E9-A1NC-01A-12W-A16L-09	78199683	167830215	81420406	7	69841										
DNM3	0	genome.wustl.edu	37	chr1	172356293	172356293	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gttaaagatttcataaattcCgagctcctagcacagttgta	7	8	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	172356293	172356293	C	T	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	1	known	silent	c.2079	p.S693	0.004	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	47	0	0	37	5	11.9	-	-	-	T	172356293	C	T	172356293	2	4	834	1	0	0	0	0	0	0	0	1	4708	639	23	1		1	DNM3	1	172356293	Silent	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	4526078	172356293	76894328	8	69842										
PKP1	0	genome.wustl.edu	37	chr1	201291149	201291149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tctgcacaacctctcctaccGcctggacgccgaggtgccca	9	18	2	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	201291149	201291149	G	A	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	missense	c.1454	p.R485H	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	44	0	0	34	4	10.53	-	-	-	A	201291149	G	A	201291149	3	1	834	1	0	0	0	0	1	0	0	0	12058	1087	38	1	1488	1	PKP1	1	201291149	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	28934856	201291149	47959472	9	69843										
OXER1	0	genome.wustl.edu	37	chr2	42990217	42990218	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ccgcgtgaggcccagcaaggINScccggctctggtggaggaag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	42990217	42990218	-	C	INS	OXER1	ENST00000378661	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1103_1102	p.A368fs	0.307:0.263	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881	40	0	0	12	2	14.29	-	-	-	C	42990218	-	C	42990217	7	5	834	1	0	1	1	0	0	0	0	0	11404	1203	42	0	172	0	OXER1	2	42990217	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		42990217	200209156	10	69844										
C2orf65	0	genome.wustl.edu	37	chr2	74802647	74802647	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gctgccaacagcttgtaggtCtgaggatgaacgggagtcca	14	9	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	74802647	74802647	C	T	SNP	C2orf65	ENST00000290536	human	ensembl	69_37n	-1	known	missense	c.992	p.R331K	1.000	NULL	NULL	-	no_errors	C2orf65	HGNC	ENSG00000159374	57	0	0	62	9	12.68	-	-	-	T	74802647	C	T	74802647	3	4	834	1	0	0	0	0	1	0	0	0	2204	913	32	2	620	2	C2orf65	2	74802647	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	31812430	74802647	168396726	11	69845										
CNTNAP5	0	genome.wustl.edu	37	chr2	125671838	125671838	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gacttgcaaaacacagtgagCgagtgtaaacgggaatattt	11	6	0	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	125671838	125671838	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	69_37n	1	known	silent	c.3894	p.S1298	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	72	0	0	109	21	16.15	-	-	-	T	125671838	C	T	125671838	2	4	834	1	0	0	0	0	0	0	0	1	3680	767	27	1		1	CNTNAP5	2	125671838	Silent	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	50869191	125671838	117527535	12	69846										
SAP130	0	genome.wustl.edu	37	chr2	128712831	128712831	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggagggacggcaatggtaggCtgatcattattttgattgga	15	4	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	128712831	128712831	C	A	SNP	SAP130	ENST00000357702	human	ensembl	69_37n	-1	known	missense	c.2229	p.Q743H	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	135	1	0.74	271	32	10.53	-	-	-	A	128712831	C	A	128712831	3	1	834	1	0	0	0	0	1	0	0	0	13917	796	28	4	1046	4	SAP130	2	128712831	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	3040993	128712831	114486542	13	69847										
POTEF	0	genome.wustl.edu	37	chr2	130832873	130832873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aagacagcccggggggcatcGtcgcccgcaaagccggcctt	14	15	0	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	40	0	0	25	3	10.71	-	-	-	A	130832873	G	A	130832873	2	1	834	1	0	0	0	0	0	0	0	1	12339	1136	40	1		1	POTEF	2	130832873	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	2120042	130832873	112366500	14	69848										
ZSWIM2	0	genome.wustl.edu	37	chr2	187702201	187702201	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcctgcacagaggacatttcAacatggaagtgtttgatgta	10	7	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	187702201	187702201	A	G	SNP	ZSWIM2	ENST00000295131	human	ensembl	69_37n	-1	known	missense	c.575	p.L192S	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012	61	0	0	79	18	18.56	-	-	-	G	187702201	A	G	187702201	3	3	834	1	0	0	0	0	1	0	0	0	18332	131	5	5	1346	5	ZSWIM2	2	187702201	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	56869328	187702201	55497172	15	69849										
TRIP12	0	genome.wustl.edu	37	chr2	230679028	230679028	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gctctgccacatcaatacacTgaataacttgcagctgggaa	8	11	2	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	230679028	230679028	T	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	missense	c.1601	p.Q534L	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	44	0	0	35	4	10.26	-	-	-	A	230679028	T	A	230679028	3	1	834	1	0	0	0	0	1	0	0	0	16652	1580	55	5	4501	5	TRIP12	2	230679028	Missense_Mutation	SNP	T	TCGA-E9-A1NC-01A-12W-A16L-09	42976827	230679028	12520345	16	69850										
ARMC9	0	genome.wustl.edu	37	chr2	232209771	232209772	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcccctgcaaaggcccgtcaINScccccggcggccacagaaac							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	232209771	232209772	-	C	INS	ARMC9	ENST00000349938	human	ensembl	69_37n	1	known	frame_shift_ins	c.1963_1964	p.G657fs	1.000:1.000	NULL	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	16	0	0	18	2	10	-	-	-	C	232209772	-	C	232209771	7	5	834	1	0	1	1	0	0	0	0	0	962	159	6	0	2041	0	ARMC9	2	232209771	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	1530743	232209771	10989602	17	69851										
HDAC4	0	genome.wustl.edu	37	chr2	240066378	240066378	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttcggccactttctgctttaGcctggaccgtaatttcagat	8	11	2	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	240066378	240066378	G	A	SNP	HDAC4	ENST00000345617	human	ensembl	69_37n	-1	known	silent	c.766	p.L256	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	48	0	0	32	10	23.81	-	-	-	A	240066378	G	A	240066378	2	1	834	1	0	0	0	0	0	0	0	1	7060	962	34	4		4	HDAC4	2	240066378	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	7856607	240066378	3132995	18	69852										
C3orf32	0	genome.wustl.edu	37	chr3	8672537	8672537	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggaacttcctggtgtcttccTgaaacatcggaggaccttga	11	10	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	8672537	8672537	T	G	SNP	C3orf32	ENST00000544814	human	ensembl	69_37n	-1	known	missense	c.479	p.Q160P	1.000	NULL	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	C3orf32	HGNC	ENSG00000125046	64	0	0	33	7	17.5	-	-	-	G	8672537	T	G	8672537	3	3	834	1	0	0	0	0	1	0	0	0	2242	1580	55	5	676	5	C3orf32	3	8672537	Missense_Mutation	SNP	T	TCGA-E9-A1NC-01A-12W-A16L-09		8672537	189349893	19	69853										
COLQ	0	genome.wustl.edu	37	chr3	15518687	15518688	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	caggcatgccaggaacacctINSggggggccaggtctaccctt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	15518687	15518688	-	G	INS	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	frame_shift_ins	c.411_410	p.G138fs	0.973:1.000	pfam_Collagen	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	33	0	0	12	3	20	-	-	-	G	15518688	-	G	15518687	7	5	834	1	0	1	1	0	0	0	0	0	3743	1567	55	0	1004	0	COLQ	3	15518687	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	6846150	15518687	182503743	20	69854										
LRTM1	0	genome.wustl.edu	37	chr3	54952915	54952916	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agatgatgccgtctgttagtINSccccctttaaaaaacaaaag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	54952915	54952916	-	C	INS	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	frame_shift_ins	c.609_608	p.L204fs	0.887:1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	26	0	0	17	2	10.53	-	-	-	C	54952916	-	C	54952915	7	5	834	1	0	1	1	0	0	0	0	0	9110	1654	58	0	432	0	LRTM1	3	54952915	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	39434228	54952915	143069515	21	69855										
COL8A1	0	genome.wustl.edu	37	chr3	99514754	99514755	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcataccacgttcactgcaaINSggggggcaacgtgtgggttg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	99514754	99514755	-	G	INS	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	frame_shift_ins	c.2009_2010	p.N673fs	1.000:1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	27	0	0	17	3	15	-	-	-	G	99514755	-	G	99514754	7	5	834	1	0	1	1	0	0	0	0	0	3735	72	3	0	2015	0	COL8A1	3	99514754	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	44561839	99514754	98507676	22	69856										
PARP14	0	genome.wustl.edu	37	chr3	122399783	122399784	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gagggctcctggggccccgaINSccccccgaagaacttgaaca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	122399783	122399784	-	C	INS	PARP14	ENST00000474629	human	ensembl	69_37n	1	known	frame_shift_ins	c.53_54	p.K21fs	0.667:0.319	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_A1pp,pfscan_A1pp,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	11	0	0	14	3	17.65	-	-	-	C	122399784	-	C	122399783	7	5	834	1	0	1	1	0	0	0	0	0	11531	275	10	0	55	0	PARP14	3	122399783	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	22885029	122399783	75622647	23	69857										
BCHE	0	genome.wustl.edu	37	chr3	165548505	165548505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttgggttccacatctctgatCcatggaagcctggaaaactt	9	10	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	165548505	165548505	C	A	SNP	BCHE	ENST00000264381	human	ensembl	69_37n	-1	known	missense	c.317	p.G106V	0.999	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	65	0	0	31	6	16.22	-	-	-	A	165548505	C	A	165548505	3	1	834	1	0	0	0	0	1	0	0	0	1362	855	30	2	1503	2	BCHE	3	165548505	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	43148722	165548505	32473925	24	69858										
GALNT7	0	genome.wustl.edu	37	chr4	174169248	174169248	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttgaaggagtagaagtggacTtagagtctattagaagaata	12	2	1	5			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	4	174169248	174169248	T	A	SNP	GALNT7	ENST00000265000	human	ensembl	69_37n	1	known	missense	c.244	p.L82I	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586	23	0	0	17	5	22.73	-	-	-	A	174169248	T	A	174169248	3	1	834	1	0	0	0	0	1	0	0	0	6268	1606	56	5	250	5	GALNT7	4	174169248	Missense_Mutation	SNP	T	TCGA-E9-A1NC-01A-12W-A16L-09		174169248	16985028	25	69859										
SIL1	0	genome.wustl.edu	37	chr5	138282853	138282854	+	Frame_Shift_Del	DEL	GG	GG	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gacagagcccagcagctcctGgaagtagccctcgtcctcac							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	138282853	138282854	GG	-	DEL	SIL1	ENST00000265195	human	ensembl	69_37n	-1	known	frame_shift_del	c.1339_1338	p.F446fs	0.974:0.994	NULL	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725	16	0	0	9	5	33.33	-	-	-	-	138282854	GG	-	138282853	7	5	834	1	0	1	0	1	0	0	0	0	14410	1357	47	0	50	0	SIL1	5	138282853	Frame_Shift_Del	DEL	GG	TCGA-E9-A1NC-01A-12W-A16L-09		138282853	42632407	26	69860	504	2								
SIL1	0	genome.wustl.edu	37	chr5	138282858	138282859	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcccagcagctcctggaagtINSagccctcgtcctcaccatcc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	138282858	138282859	-	G	INS	SIL1	ENST00000265195	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1334_1333	p.Y445fs	1.000:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725	18	0	0	9	6	40	-	-	-	G	138282859	-	G	138282858	7	5	834	1	0	1	1	0	0	0	0	0	14410	1638	57	0	55	0	SIL1	5	138282858	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	5	138282858	42632402	27	69861	504	2								
PCDHGC3	0	genome.wustl.edu	37	chr5	140857258	140857258	+	Frame_Shift_Del	DEL	A	A	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gtgtcatccttagtgcccctAgactatgaggatcggcggga							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	140857258	140857258	A	-	DEL	PCDHGC3	ENST00000308177	human	ensembl	69_37n	1	known	frame_shift_del	c.1575	p.D526fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184	21	0	0	6	2	25	-	-	-	-	140857258	A	-	140857258	7	5	834	1	0	1	0	1	0	0	0	0	11642	407	15	0	1577	0	PCDHGC3	5	140857258	Frame_Shift_Del	DEL	A	TCGA-E9-A1NC-01A-12W-A16L-09	2574400	140857258	40058002	28	69862										
STC2	0	genome.wustl.edu	37	chr5	172745090	172745090	+	Frame_Shift_Del	DEL	G	G	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tccacctggggctggcgctcGgggggcgccgtgggaggctt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	172745090	172745090	G	-	DEL	STC2	ENST00000265087	human	ensembl	69_37n	-1	known	frame_shift_del	c.669	p.E224fs	0.000	NULL	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739	23	0	0	14	2	12.5	-	-	-	-	172745090	G	-	172745090	7	5	834	1	0	1	0	1	0	0	0	0	15367	1103	39	0	243	0	STC2	5	172745090	Frame_Shift_Del	DEL	G	TCGA-E9-A1NC-01A-12W-A16L-09	31887832	172745090	8170170	29	69863										
NOL7	0	genome.wustl.edu	37	chr6	13620991	13620992	+	Frame_Shift_Ins	INS	-	-	AA													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	actttatattctaggaatccINSaaaaaaaacaaaatgccaag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	6	13620991	13620992	-	AA	INS	NOL7	ENST00000451315	human	ensembl	69_37n	1	known	frame_shift_ins	c.706_707	p.Q239fs	0.542:0.993	NULL	pfam_NUC129	-	no_errors	NOL7	HGNC	ENSG00000225921	30	0	0	17	2	10.53	-	-	-	AA	13620992	-	AA	13620991	7	5	834	1	0	1	1	0	0	0	0	0	10598	595	21	0	736	0	NOL7	6	13620991	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		13620991	157494076	30	69864										
C6orf222	0	genome.wustl.edu	37	chr6	36291139	36291139	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aaagctgggcctcttgggtcGtcgggcctctgggctggcag	17	11	2	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	6	36291139	36291139	G	T	SNP	C6orf222	ENST00000437635	human	ensembl	69_37n	-1	known	silent	c.1402	p.R468	0.092	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325	46	0	0	58	20	25.64	-	-	-	T	36291139	G	T	36291139	2	4	834	1	0	0	0	0	0	0	0	1	2377	1153	40	3		3	C6orf222	6	36291139	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	22670148	36291139	134823928	31	69865										
PLN	0	genome.wustl.edu	37	chr6	118880141	118880141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agaagagcctcaaccattgaAatgcctcaacaagcacgtca	7	12	3	3			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	6	118880141	118880141	A	C	SNP	PLN	ENST00000357525	human	ensembl	69_37n	1	known	missense	c.57	p.E19D	1.000	pfam_P_lamban,pirsf_P_lamban,tigrfam_P_lamban	pfam_P_lamban,pirsf_P_lamban,tigrfam_P_lamban	-	no_errors	PLN	HGNC	ENSG00000198523	87	0	0	74	23	23.47	-	-	-	C	118880141	A	C	118880141	3	2	834	1	0	0	0	0	1	0	0	0	12174	11	1	5	59	5	PLN	6	118880141	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	82589002	118880141	52234926	32	69866										
SUN1	0	genome.wustl.edu	37	chr7	891092	891092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tgtccaggacggcgtggtcgGccctttggctggccgtggtt	17	11	0	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	891092	891092	G	T	SNP	SUN1	ENST00000456758	human	ensembl	69_37n	1	known	missense	c.1297	p.A433S	0.000	NULL	pfam_RNA-bd_mt,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828	73	0	0	23	32	58.18	-	-	-	T	891092	G	T	891092	3	4	834	1	0	0	0	0	1	0	0	0	15482	1203	42	4	935	4	SUN1	7	891092	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09		891092	158247571	33	69867										
LIMK1	0	genome.wustl.edu	37	chr7	73535322	73535323	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cgctactgccccccaaactgINSccccccgagcttcttcccca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	73535322	73535323	-	C	INS	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	frame_shift_ins	c.1724_1725	p.S578fs	1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	32	0	0	22	3	12	-	-	-	C	73535323	-	C	73535322	7	5	834	1	0	1	1	0	0	0	0	0	8856	1319	46	0	1782	0	LIMK1	7	73535322	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	72644230	73535322	85603341	34	69868										
SAMD9L	0	genome.wustl.edu	37	chr7	92763785	92763785	+	Frame_Shift_Del	DEL	G	G	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcgcttttcaggtctgatctGccgttgcagaaaatccagct							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	92763785	92763785	G	-	DEL	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	frame_shift_del	c.1500	p.R501fs	0.194	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	38	0	0	32	7	17.95	-	-	-	-	92763785	G	-	92763785	7	5	834	1	0	1	0	1	0	0	0	0	13913	1306	46	0	3258	0	SAMD9L	7	92763785	Frame_Shift_Del	DEL	G	TCGA-E9-A1NC-01A-12W-A16L-09	19228463	92763785	66374878	35	69869										
TEX15	0	genome.wustl.edu	37	chr8	30705420	30705420	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tataatgctagcataattttGatttattttccccaatttca	3	7	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	30705420	30705420	G	C	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1114	p.Q372E	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	131	0	0	65	16	19.75	-	-	-	C	30705420	G	C	30705420	3	2	834	1	0	0	0	0	1	0	0	0	15874	1299	45	2	7271	2	TEX15	8	30705420	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09		30705420	115658602	36	69870										
PRDM14	0	genome.wustl.edu	37	chr8	70964468	70964468	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcaaaagatttaccacagtaCttgcatttgaagggcttctc	8	9	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	70964468	70964468	C	G	SNP	PRDM14	ENST00000276594	human	ensembl	69_37n	-1	known	missense	c.1560	p.K520N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	44	0	0	70	14	16.67	-	-	-	G	70964468	C	G	70964468	3	3	834	1	0	0	0	0	1	0	0	0	12536	564	20	4	159	4	PRDM14	8	70964468	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	40259048	70964468	75399554	37	69871										
OTUD6B	0	genome.wustl.edu	37	chr8	92082559	92082559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gggttgaggggtggaaggtgCctactagccggtgcaggttt	19	6	0	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	92082559	92082559	C	T	SNP	OTUD6B	ENST00000285420	human	ensembl	69_37n	1	known	missense	c.37	p.P13S	0.000	NULL	pfam_OTU,pfam_Peptidase_C65_otubain,pfscan_OTU	-	no_errors	OTUD6B	HGNC	ENSG00000155100	144	1	0.68	163	49	23.11	-	-	-	T	92082559	C	T	92082559	3	4	834	1	0	0	0	0	1	0	0	0	11390	739	26	4	39	4	OTUD6B	8	92082559	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	21118091	92082559	54281463	38	69872										
FAM135B	0	genome.wustl.edu	37	chr8	139164094	139164095	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttttaaattaagacctttggINStttcaacacctggagtgttc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	139164094	139164095	-	C	INS	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2624_2623	p.T875fs	1.000:0.979	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	57	0	0	84	56	40	-	-	-	C	139164095	-	C	139164094	7	5	834	1	0	1	1	0	0	0	0	0	5489	1261	44	0	1628	0	FAM135B	8	139164094	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	47081535	139164094	7199928	39	69873										
GRINA	0	genome.wustl.edu	37	chr8	145065456	145065457	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ccccccaaccctggatatccINSgggggggccccagccaccca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	145065456	145065457	-	G	INS	GRINA	ENST00000313269	human	ensembl	69_37n	1	known	frame_shift_ins	c.65_66	p.P25fs	1.000:0.997	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GRINA	HGNC	ENSG00000178719	15	0	0	16	2	11.11	-	-	-	G	145065457	-	G	145065456	7	5	834	1	0	1	1	0	0	0	0	0	6836	652	23	0	67	0	GRINA	8	145065456	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	5901362	145065456	1298566	40	69874										
EPC1	0	genome.wustl.edu	37	chr10	32576120	32576120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cagcaggactcgtctgttggGgagtagcagcggcagacgat	16	9	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	32576120	32576120	G	T	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.1058	p.P353H	1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	89	0	0	73	14	16.09	-	-	-	T	32576120	G	T	32576120	3	4	834	1	0	0	0	0	1	0	0	0	5197	1232	43	4	1488	4	EPC1	10	32576120	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09		32576120	102958627	41	69875										
USP54	0	genome.wustl.edu	37	chr10	75290088	75290088	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcacgagagtgtaaaggcagGgtcctaggaggttttttgtc	14	6	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	75290088	75290088	G	T	SNP	USP54	ENST00000424265	human	ensembl	69_37n	-1	known	missense	c.1033	p.P345T	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP54	HGNC	ENSG00000166348	97	0	0	89	15	14.42	-	-	-	T	75290088	G	T	75290088	3	4	834	1	0	0	0	0	1	0	0	0	17182	1219	43	4	3457	4	USP54	10	75290088	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	42713968	75290088	60244659	42	69876										
MYOF	0	genome.wustl.edu	37	chr10	95093659	95093659	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcatccggcagagggtagatCcgaaaggagccctaaaagag	13	9	1	3			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	95093659	95093659	C	G	SNP	MYOF	ENST00000463743	human	ensembl	69_37n	-1	known	missense	c.2756	p.G919A	0.151	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Ferlin_B-domain,pfam_C2_Ca-dep,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peroxin/Ferlin,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYOF	HGNC	ENSG00000138119	26	0	0	28	8	22.22	-	-	-	G	95093659	C	G	95093659	3	3	834	1	0	0	0	0	1	0	0	0	10161	842	30	2	1662	2	MYOF	10	95093659	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	19803571	95093659	40441088	43	69877										
PI4K2A	0	genome.wustl.edu	37	chr10	99361620	99361621	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttacttcgtgcaggagctgtINSggggggcgtctgcgccctgg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	99361620	99361621	-	G	INS	PI4K2A	ENST00000555577	human	ensembl	69_37n	1	known	frame_shift_ins	c.218_219	p.V76fs	1.000:0.996	NULL	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	13	0	0	25	4	13.79	-	-	-	G	99361621	-	G	99361620	7	5	834	1	0	1	1	0	0	0	0	0	11945	1696	59	0		0	PI4K2A	10	99361620	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	4267961	99361620	36173127	44	69878										
BRSK2	0	genome.wustl.edu	37	chr11	1477639	1477640	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cgggccgagtacaaggccacINSgggggggccagccgtgttcc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	1477639	1477640	-	G	INS	BRSK2	ENST00000382179	human	ensembl	69_37n	1	known	frame_shift_ins	c.1868_1869	p.P626fs	0.998:0.882	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	28	0	0	4	2	33.33	-	-	-	G	1477640	-	G	1477639	7	5	834	1	0	1	1	0	0	0	0	0	1532	536	19	0	1796	0	BRSK2	11	1477639	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		1477639	133528877	45	69879										
OR56A1	0	genome.wustl.edu	37	chr11	6048395	6048395	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcacagatgcagttctcaatGacattttccccacagtaatg	7	11	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	6048395	6048395	G	A	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	silent	c.540	p.V180	0.373	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	33	0	0	41	8	16.33	-	-	-	A	6048395	G	A	6048395	2	1	834	1	0	0	0	0	0	0	0	1	11206	1277	45	2		2	OR56A1	11	6048395	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	4570756	6048395	128958121	46	69880										
OR5M1	0	genome.wustl.edu	37	chr11	56380428	56380428	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cagagcaggccagcatgataAgaggaggatcagcgcagtag	15	8	1	3			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	56380428	56380428	A	G	SNP	OR5M1	ENST00000526538	human	ensembl	69_37n	-1	known	missense	c.551	p.L184P	0.006	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M1	HGNC	ENSG00000255012	31	0	0	52	19	26.76	-	-	-	G	56380428	A	G	56380428	3	3	834	1	0	0	0	0	1	0	0	0	11245	72	3	5	400	5	OR5M1	11	56380428	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	50332033	56380428	78626088	47	69881										
TMEM132A	0	genome.wustl.edu	37	chr11	60695117	60695118	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcattctccctccaggtggtINScccccctcgagtcactgagc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	60695117	60695118	-	C	INS	TMEM132A	ENST00000005286	human	ensembl	69_37n	1	known	frame_shift_ins	c.320_321	p.R110fs	0.997:0.924	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	25	0	0	8	2	20	-	-	-	C	60695118	-	C	60695117	7	5	834	1	0	1	1	0	0	0	0	0	16140	1667	58	0	330	0	TMEM132A	11	60695117	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	4314689	60695117	74311399	48	69882										
RIN1	0	genome.wustl.edu	37	chr11	66102471	66102472	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcccctggcagcacggggacINSggggggaggtggcacggcag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	66102471	66102472	-	G	INS	RIN1	ENST00000311320	human	ensembl	69_37n	-1	known	frame_shift_ins	c.799_798	p.V266fs	0.390:0.002	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791	19	0	0	23	3	11.54	-	-	-	G	66102472	-	G	66102471	7	5	834	1	0	1	1	0	0	0	0	0	13457	536	19	0	1572	0	RIN1	11	66102471	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	5407354	66102471	68904045	49	69883										
GPR83	0	genome.wustl.edu	37	chr11	94113625	94113625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agtagagggcattgttggtgCggatgaccttgctggacagg	17	6	0	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	94113625	94113625	C	T	SNP	GPR83	ENST00000243673	human	ensembl	69_37n	-1	known	missense	c.962	p.R321H	0.862	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	45	0	0	53	14	20.9	-	-	-	T	94113625	C	T	94113625	3	4	834	1	0	0	0	0	1	0	0	0	6763	768	27	1	313	1	GPR83	11	94113625	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	28011154	94113625	40892891	50	69884										
OR10G4	0	genome.wustl.edu	37	chr11	123886720	123886720	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gtgccctcctggccaccggcActtggctcagtggctctctg	12	16	2	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	123886720	123886720	A	G	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	missense	c.439	p.T147A	0.267	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	63	0	0	70	21	23.08	-	-	-	G	123886720	A	G	123886720	3	3	834	1	0	0	0	0	1	0	0	0	10974	159	6	5	441	5	OR10G4	11	123886720	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	29773095	123886720	11119796	51	69885										
KLRC1	0	genome.wustl.edu	37	chr12	10603569	10603569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggatcttttaaatgctttacCtttgcagtgataggttttgt	9	5	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	10603569	10603569	C	A	SNP	KLRC1	ENST00000359151	human	ensembl	69_37n	-1	known	missense	c.187	p.D63Y	0.888	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC1	HGNC	ENSG00000134545	139	0	0	63	13	17.11	-	-	-	A	10603569	C	A	10603569	3	1	834	1	0	0	0	0	1	0	0	0	8468	695	24	4	538	4	KLRC1	12	10603569	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09		10603569	123248326	52	69886										
PDZRN4	0	genome.wustl.edu	37	chr12	41967163	41967163	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcagttaattcaacagaaatCtgcagtcgagtatgctcaga	9	8	3	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	41967163	41967163	C	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	missense	c.2582	p.S861Y	0.998	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	31	0	0	29	7	19.44	-	-	-	A	41967163	C	A	41967163	3	1	834	1	0	0	0	0	1	0	0	0	11783	913	32	2	2693	2	PDZRN4	12	41967163	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	31363594	41967163	91884732	53	69887										
LRP1	0	genome.wustl.edu	37	chr12	57574482	57574482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggtgggctgatcaggtgtcgGaaaagatgggcacatgcagc	17	7	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	57574482	57574482	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.5419	p.E1807K	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	47	0	0	22	8	26.67	-	-	-	A	57574482	G	A	57574482	3	1	834	1	0	0	0	0	1	0	0	0	9017	1175	41	2	5549	2	LRP1	12	57574482	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	15607319	57574482	76277413	54	69888										
KIF5A	0	genome.wustl.edu	37	chr12	57975304	57975304	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aacagcctcttccagaactaCcagaatctctacctgcaggc	6	15	2	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	57975304	57975304	C	T	SNP	KIF5A	ENST00000455537	human	ensembl	69_37n	1	known	silent	c.2862	p.Y954	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980	35	0	0	55	21	27.63	-	-	-	T	57975304	C	T	57975304	2	4	834	1	0	0	0	0	0	0	0	1	8357	518	18	4		4	KIF5A	12	57975304	Silent	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	400822	57975304	75876591	55	69889										
BBS10	0	genome.wustl.edu	37	chr12	76740486	76740486	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	catgtaatttagatcaaggtCtttaaataattgccgaagca	7	6	2	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	76740486	76740486	C	G	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.1279	p.D427H	0.491	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	29	0	0	21	9	30	-	-	-	G	76740486	C	G	76740486	3	3	834	1	0	0	0	0	1	0	0	0	1340	913	32	2	896	2	BBS10	12	76740486	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	18765182	76740486	57111409	56	69890										
KERA	0	genome.wustl.edu	37	chr12	91445255	91445255	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aaggaatctcgttctgcaggCagcatggatgggctgggaca	15	8	2	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	91445255	91445255	C	T	SNP	KERA	ENST00000266719	human	ensembl	69_37n	-1	known	silent	c.927	p.L309	0.075	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330	47	0	0	17	11	39.29	-	-	-	T	91445255	C	T	91445255	2	4	834	1	0	0	0	0	0	0	0	1	8196	697	25	4		4	KERA	12	91445255	Silent	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	14704769	91445255	42406640	57	69891										
TMEM132B	0	genome.wustl.edu	37	chr12	125834575	125834576	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aggagatcccagccctgctcINSgggggcaccacgatggagct							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	125834575	125834576	-	G	INS	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	frame_shift_ins	c.630_631	p.T212fs	0.964:0.995	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	17	0	0	15	2	11.76	-	-	-	G	125834576	-	G	125834575	7	5	834	1	0	1	1	0	0	0	0	0	16141	871	31	0	636	0	TMEM132B	12	125834575	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	34389320	125834575	8017320	58	69892										
LRP10	0	genome.wustl.edu	37	chr14	23346239	23346240	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aggtgcccgccgtcgtcagcINSggggccgcttgatgcgacgc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	23346239	23346240	-	G	INS	LRP10	ENST00000359591	human	ensembl	69_37n	1	known	frame_shift_ins	c.1645_1646	p.R551fs	1.000:1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP10	HGNC	ENSG00000197324	23	0	0	8	2	20	-	-	-	G	23346240	-	G	23346239	7	5	834	1	0	1	1	0	0	0	0	0	9018	759	27	0	1671	0	LRP10	14	23346239	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		23346239	84003301	59	69893										
NOVA1	0	genome.wustl.edu	37	chr14	26917796	26917796	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ataaaactgctggaaaggctGcaacgccagcaaggttagca	11	9	0	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	26917796	26917796	G	T	SNP	NOVA1	ENST00000539517	human	ensembl	69_37n	-1	known	missense	c.893	p.A298E	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910	55	0	0	47	9	16.07	-	-	-	T	26917796	G	T	26917796	3	4	834	1	0	0	0	0	1	0	0	0	10626	1319	46	4	634	4	NOVA1	14	26917796	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	3571557	26917796	80431744	60	69894										
DAAM1	0	genome.wustl.edu	37	chr14	59730208	59730208	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	attcagccatggccccaagaAagagaggtggacgaggtatt	13	8	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	59730208	59730208	A	C	SNP	DAAM1	ENST00000351081	human	ensembl	69_37n	1	known	missense	c.13	p.K5Q	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DAAM1	HGNC	ENSG00000100592	51	0	0	119	22	15.6	-	-	-	C	59730208	A	C	59730208	3	2	834	1	0	0	0	0	1	0	0	0	4247	15	1	5	15	5	DAAM1	14	59730208	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	32812412	59730208	47619332	61	69895										
PLEKHH1	0	genome.wustl.edu	37	chr14	68046566	68046566	+	Frame_Shift_Del	DEL	G	G	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gatccctcgggcagggacctGgagcactgcctgcagggaag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	68046566	68046566	G	-	DEL	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	frame_shift_del	c.3156	p.E1053fs	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	20	0	0	13	2	13.33	-	-	-	-	68046566	G	-	68046566	7	5	834	1	0	1	0	1	0	0	0	0	12150	1335	47	0	3238	0	PLEKHH1	14	68046566	Frame_Shift_Del	DEL	G	TCGA-E9-A1NC-01A-12W-A16L-09	8316358	68046566	39302974	62	69896										
RPS6KA5	0	genome.wustl.edu	37	chr14	91338524	91338524	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tagttttaccgtgagaatgaGaggaagaagaatgggaactc	13	4	0	4			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	91338524	91338524	G	C	SNP	RPS6KA5	ENST00000261991	human	ensembl	69_37n	-1	known	missense	c.2303	p.S768C	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784	109	0	0	63	9	12.5	-	-	-	C	91338524	G	C	91338524	3	2	834	1	0	0	0	0	1	0	0	0	13740	942	33	2	109	2	RPS6KA5	14	91338524	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	23291958	91338524	16011016	63	69897										
RTL1	0	genome.wustl.edu	37	chr14	101350009	101350010	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aggttccgggggcgggcctcINSggggggcagcctgagcatag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	101350009	101350010	-	G	INS	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1117_1116	p.E372fs	0.018:0.004	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	25	0	0	11	2	15.38	-	-	-	G	101350010	-	G	101350009	7	5	834	1	0	1	1	0	0	0	0	0	13810	893	31	0	2963	0	RTL1	14	101350009	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	10011485	101350009	5999531	64	69898										
PAK6	0	genome.wustl.edu	37	chr15	40566446	40566447	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	atgaagaggctccgggacagINSccccccacccaagctgaaaa							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	40566446	40566447	-	C	INS	PAK6	ENST00000260404	human	ensembl	69_37n	1	known	frame_shift_ins	c.1847_1848	p.P619fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK6	HGNC	ENSG00000137843	21	0	0	5	2	28.57	-	-	-	C	40566447	-	C	40566446	7	5	834	1	0	1	1	0	0	0	0	0	11477	971	34	0	1873	0	PAK6	15	40566446	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		40566446	61964946	65	69899										
SPTBN5	0	genome.wustl.edu	37	chr15	42164624	42164624	+	Frame_Shift_Del	DEL	A	A	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ctggtcaagctcctccatggAgctccagtaaatggctagtt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	42164624	42164624	A	-	DEL	SPTBN5	ENST00000320955	human	ensembl	69_37n	-1	known	frame_shift_del	c.5041	p.S1681fs	0.965	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877	34	0	0	4	2	33.33	-	-	-	-	42164624	A	-	42164624	7	5	834	1	0	1	0	1	0	0	0	0	15213	304	11	0	6151	0	SPTBN5	15	42164624	Frame_Shift_Del	DEL	A	TCGA-E9-A1NC-01A-12W-A16L-09	1598178	42164624	60366768	66	69900										
MAP1A	0	genome.wustl.edu	37	chr15	43822051	43822052	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gctggagggcaaggcccagtINSggggggagaatcttcaggtg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	43822051	43822052	-	G	INS	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	frame_shift_ins	c.8239_8240	p.E2749fs	1.000:1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	18	0	0	24	3	11.11	-	-	-	G	43822052	-	G	43822051	7	5	834	1	0	1	1	0	0	0	0	0	9298	1696	59	0	8245	0	MAP1A	15	43822051	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	1657427	43822051	58709341	67	69901										
DUOX2	0	genome.wustl.edu	37	chr15	45387138	45387138	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcgggccctgacatactagcAtggtggtcctgaggtcgaac	14	11	0	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	45387138	45387138	A	C	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.4391	p.M1464R	1.000	pfam_Fe_red_NAD-bd_6	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	44	0	0	60	14	18.92	-	-	-	C	45387138	A	C	45387138	3	2	834	1	0	0	0	0	1	0	0	0	4836	217	8	5	267	5	DUOX2	15	45387138	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	1565087	45387138	57144254	68	69902										
DMXL2	0	genome.wustl.edu	37	chr15	51791403	51791403	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttgtggaagagtaggggaaaGtacatgtgcagcctcaaata	13	5	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	51791403	51791403	G	T	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.4018	p.L1340I	0.985	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	29	0	0	23	7	23.33	-	-	-	T	51791403	G	T	51791403	3	4	834	1	0	0	0	0	1	0	0	0	4631	1029	36	4	5199	4	DMXL2	15	51791403	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	6404265	51791403	50739989	69	69903										
C15orf39	0	genome.wustl.edu	37	chr15	75499803	75499804	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agacagtccagttccctgtaINScccccccagcactgcccccc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	75499803	75499804	-	C	INS	C15orf39	ENST00000360639	human	ensembl	69_37n	1	known	frame_shift_ins	c.1414_1415	p.A475fs	0.756:0.848	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173	23	0	0	5	2	28.57	-	-	-	C	75499804	-	C	75499803	7	5	834	1	0	1	1	0	0	0	0	0	1805	391	14	0	1416	0	C15orf39	15	75499803	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	23708400	75499803	27031589	70	69904										
MMP25	0	genome.wustl.edu	37	chr16	3100449	3100450	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agctaccccttcgacgggttINSggggggcaccctagcccatg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	3100449	3100450	-	G	INS	MMP25	ENST00000336577	human	ensembl	69_37n	1	known	frame_shift_ins	c.563_564	p.T191fs	0.011:0.021	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP25	HGNC	ENSG00000008516	24	0	0	9	2	18.18	-	-	-	G	3100450	-	G	3100449	7	5	834	1	0	1	1	0	0	0	0	0	9734	1821	63	0	577	0	MMP25	16	3100449	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		3100449	87254304	71	69905										
POLR3E	0	genome.wustl.edu	37	chr16	22337509	22337510	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	atctgcacttggccagcctgINSccccccggccacacactctt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	22337509	22337510	-	C	INS	POLR3E	ENST00000299853	human	ensembl	69_37n	1	known	frame_shift_ins	c.1776_1777	p.G594fs	0.991:1.000	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	18	0	0	15	3	16.67	-	-	-	C	22337510	-	C	22337509	7	5	834	1	0	1	1	0	0	0	0	0	12306	1306	46	0	1842	0	POLR3E	16	22337509	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	19237060	22337509	68017244	72	69906										
NUP93	0	genome.wustl.edu	37	chr16	56782199	56782199	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gtgagctccttcagcaagctGaacagcttgctgctgagact	11	11	1	3			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	56782199	56782199	G	A	SNP	NUP93	ENST00000308159	human	ensembl	69_37n	1	known	missense	c.40	p.E14K	1.000	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900	26	0	0	20	6	23.08	-	-	-	A	56782199	G	A	56782199	3	1	834	1	0	0	0	0	1	0	0	0	10845	1291	45	2	42	2	NUP93	16	56782199	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	34444690	56782199	33572554	73	69907										
SPATA2L	0	genome.wustl.edu	37	chr16	89764584	89764585	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	acctgcaccagctggcaggcINSggggggcagggcggtcacca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	89764584	89764585	-	G	INS	SPATA2L	ENST00000289805	human	ensembl	69_37n	-1	known	frame_shift_ins	c.433_432	p.A144fs	0.864:0.008	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792	12	0	0	4	2	33.33	-	-	-	G	89764585	-	G	89764584	7	5	834	1	0	1	1	0	0	0	0	0	15100	768	27	0	845	0	SPATA2L	16	89764584	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	32982385	89764584	590169	74	69908										
P2RX5	0	genome.wustl.edu	37	chr17	3583076	3583076	+	Frame_Shift_Del	DEL	C	C	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cctgggaactgtcttctaggCccctggacaagatacaagct							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	3583076	3583076	C	-	DEL	P2RX5	ENST00000435558	human	ensembl	69_37n	-1	known	frame_shift_del	c.1067	p.G356fs	0.072	pfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454	13	0	0	7	2	22.22	-	-	-	-	3583076	C	-	3583076	7	5	834	1	0	1	0	1	0	0	0	0	11416	739	26	0	209	0	P2RX5	17	3583076	Frame_Shift_Del	DEL	C	TCGA-E9-A1NC-01A-12W-A16L-09		3583076	77612134	75	69909										
MPRIP	0	genome.wustl.edu	37	chr17	17046885	17046886	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	acaggacttcaccaatgaagINScccccccagctcctctccca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	17046885	17046886	-	C	INS	MPRIP	ENST00000395811	human	ensembl	69_37n	1	known	frame_shift_ins	c.1051_1052	p.A354fs	0.999:0.999	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin/RR-like,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030	26	0	0	11	2	15.38	-	-	-	C	17046886	-	C	17046885	7	5	834	1	0	1	1	0	0	0	0	0	9815	971	34	0	1085	0	MPRIP	17	17046885	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	13463809	17046885	64148325	76	69910										
FBXW10	0	genome.wustl.edu	37	chr17	18675985	18675985	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agtactcctgaagccggccaAgttctcttcaggtaaaaaac	8	11	2	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	18675985	18675985	A	G	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	1	known	missense	c.2354	p.K785R	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW10	HGNC	ENSG00000171931	24	0	0	26	7	21.21	-	-	-	G	18675985	A	G	18675985	3	3	834	1	0	0	0	0	1	0	0	0	5809	72	3	5	2313	5	FBXW10	17	18675985	Missense_Mutation	SNP	A	TCGA-E9-A1NC-01A-12W-A16L-09	1629100	18675985	62519225	77	69911										
BRCA1	0	genome.wustl.edu	37	chr17	41256165	41256165	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aggattttcgggttcactctGtagaagtcttttggcacggt	12	7	3	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	41256165	41256165	G	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	nonsense	c.415	p.Q139*	0.003	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	150	0	0	171	55	24.34	-	-	-	A	41256165	G	A	41256165	4	1	834	1	0	0	0	0	0	1	0	0	1506	1386	48	4	5318	4	BRCA1	17	41256165	Nonsense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	22580180	41256165	39939045	78	69912										
C17orf47	0	genome.wustl.edu	37	chr17	56620396	56620396	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggtgtaggtccttgggacatGtaagtaatttctgggggttt	15	4	1	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	56620396	56620396	G	A	SNP	C17orf47	ENST00000321691	human	ensembl	69_37n	-1	known	silent	c.1152	p.Y384	0.002	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013	153	0	0	179	30	14.29	-	-	-	A	56620396	G	A	56620396	2	1	834	1	0	0	0	0	0	0	0	1	1873	1372	48	4		4	C17orf47	17	56620396	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	15364231	56620396	24574814	79	69913										
MED13	0	genome.wustl.edu	37	chr17	60023924	60023924	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ctgggttgcagggtcacaggTtagccaggagagtgcattgt	16	7	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	60023924	60023924	T	C	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.6430	p.T2144A	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	50	0	0	32	20	38.46	-	-	-	C	60023924	T	C	60023924	3	2	834	1	0	0	0	0	1	0	0	0	9501	1725	60	5	98	5	MED13	17	60023924	Missense_Mutation	SNP	T	TCGA-E9-A1NC-01A-12W-A16L-09	3403528	60023924	21171286	80	69914										
ENGASE	0	genome.wustl.edu	37	chr17	77081356	77081357	+	Frame_Shift_Ins	INS	-	-	CC													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcctccgacccctccgggtgINSccccccaccaagctggccag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	77081356	77081357	-	CC	INS	ENGASE	ENST00000579016	human	ensembl	69_37n	1	known	frame_shift_ins	c.1632_1633	p.T546fs	1.000:1.000	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	21	0	0	12	2	14.29	-	-	-	CC	77081357	-	CC	77081356	7	5	834	1	0	1	1	0	0	0	0	0	5155	1306	46	0	1678	0	ENGASE	17	77081356	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	17057432	77081356	4113854	81	69915										
HGS	0	genome.wustl.edu	37	chr17	79660569	79660570	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ccacttccaccactgagctgINSccccccgagtacctgaccag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	79660569	79660570	-	C	INS	HGS	ENST00000329138	human	ensembl	69_37n	1	known	frame_shift_ins	c.699_700	p.E235fs	1.000:1.000	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359	17	0	0	5	2	28.57	-	-	-	C	79660570	-	C	79660569	7	5	834	1	0	1	1	0	0	0	0	0	7138	1306	46	0	733	0	HGS	17	79660569	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	2579213	79660569	1534641	82	69916										
FN3K	0	genome.wustl.edu	37	chr17	80708457	80708458	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tggcaatcgccttgatgtttINSggggggttccccagatcctt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	80708457	80708458	-	G	INS	FN3K	ENST00000300784	human	ensembl	69_37n	1	known	frame_shift_ins	c.756_757	p.F254fs	0.961:1.000	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3K	HGNC	ENSG00000167363	13	0	0	18	2	10	-	-	-	G	80708458	-	G	80708457	7	5	834	1	0	1	1	0	0	0	0	0	6009	1809	63	0	778	0	FN3K	17	80708457	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	1047888	80708457	486753	83	69917										
FBN3	0	genome.wustl.edu	37	chr19	8193948	8193949	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcctgccagaagtggaagccINSgggggggcaggagcagctgt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	8193948	8193949	-	G	INS	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2260_2259	p.G753fs	1.000:0.646	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	26	0	0	36	5	12.2	-	-	-	G	8193949	-	G	8193948	7	5	834	1	0	1	1	0	0	0	0	0	5750	652	23	0	6357	0	FBN3	19	8193948	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		8193948	50935035	84	69918										
ANGPTL6	0	genome.wustl.edu	37	chr19	10204185	10204186	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agtgggcacgtgctccacggINScccccccagtcctccaggag							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	10204185	10204186	-	C	INS	ANGPTL6	ENST00000253109	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1062_1061	p.R355fs	0.996:1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL6	HGNC	ENSG00000130812	17	0	0	14	2	12.5	-	-	-	C	10204186	-	C	10204185	7	5	834	1	0	1	1	0	0	0	0	0	618	1190	42	0	358	0	ANGPTL6	19	10204185	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	2010237	10204185	48924798	85	69919										
TYK2	0	genome.wustl.edu	37	chr19	10463112	10463113	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcgggcctggctctcaccgtINSgggggggctctggctggagt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	10463112	10463113	-	G	INS	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3316_3315	p.T1105fs	0.001:0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	29	0	0	20	3	13.04	-	-	-	G	10463113	-	G	10463112	7	5	834	1	0	1	1	0	0	0	0	0	16907	1696	59	0	259	0	TYK2	19	10463112	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	258927	10463112	48665871	86	69920										
LPHN1	0	genome.wustl.edu	37	chr19	14263249	14263249	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gcaggtggttccccatggtaCctggccaaaggatcagaggt	14	10	1	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	14263249	14263249	C	G	SNP	LPHN1	ENST00000340736	human	ensembl	69_37n	-1	known	missense	c.3536	p.G1179A	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071	72	0	0	41	9	18	-	-	-	G	14263249	C	G	14263249	3	3	834	1	0	0	0	0	1	0	0	0	8981	521	18	4	900	4	LPHN1	19	14263249	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	3800137	14263249	44865734	87	69921										
ANKLE1	0	genome.wustl.edu	37	chr19	17397270	17397271	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cctgctcgtcgccggcgcttINSgggggtgcacctgctgcacc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	17397270	17397271	-	G	INS	ANKLE1	ENST00000404261	human	ensembl	69_37n	1	known	frame_shift_ins	c.1757_1758	p.V588fs	0.997:0.997	NULL	pfam_Ankyrin_rpt,pfam_LEM,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM	-	no_errors	ANKLE1	HGNC	ENSG00000160117	14	0	0	4	2	33.33	-	-	-	G	17397271	-	G	17397270	7	5	834	1	0	1	1	0	0	0	0	0	632	1821	63	0	1791	0	ANKLE1	19	17397270	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	3134021	17397270	41731713	88	69922										
CEACAM4	0	genome.wustl.edu	37	chr19	42133319	42133320	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cctccacggggagcggctgaINSgggggggcccatggtctctg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	42133319	42133320	-	G	INS	CEACAM4	ENST00000221954	human	ensembl	69_37n	-1	known	frame_shift_ins	c.13_12	p.S4fs	0.021:0.019	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	CEACAM4	HGNC	ENSG00000105352	30	0	0	23	3	11.54	-	-	-	G	42133320	-	G	42133319	7	5	834	1	0	1	1	0	0	0	0	0	3223	304	11	0	749	0	CEACAM4	19	42133319	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	24736049	42133319	16995664	89	69923										
BCL3	0	genome.wustl.edu	37	chr19	45262842	45262843	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gaggccctggccggccggtgINScccccctccccagctccagg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	45262842	45262843	-	C	INS	BCL3	ENST00000164227	human	ensembl	69_37n	1	known	frame_shift_ins	c.1335_1336	p.S447fs	0.755:0.967	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BCL3	HGNC	ENSG00000069399	39	0	0	18	2	10	-	-	-	C	45262843	-	C	45262842	7	5	834	1	0	1	1	0	0	0	0	0	1379	1306	46	0	1369	0	BCL3	19	45262842	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	3129523	45262842	13866141	90	69924										
FAM83E	0	genome.wustl.edu	37	chr19	49104544	49104545	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cggaggtcgggagtccacttINSccccccaggggcctcctcca							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	49104544	49104545	-	C	INS	FAM83E	ENST00000263266	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1259_1258	p.E420fs	0.103:0.098	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523	15	0	0	8	2	20	-	-	-	C	49104545	-	C	49104544	7	5	834	1	0	1	1	0	0	0	0	0	5682	1783	62	0	181	0	FAM83E	19	49104544	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	3841702	49104544	10024439	91	69925										
SIGLEC7	0	genome.wustl.edu	37	chr19	51647820	51647820	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	cccctgcacccctccaccacCcgctcctcagtgctcaccct	4	25	2	0			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	51647820	51647820	C	A	SNP	SIGLEC7	ENST00000317643	human	ensembl	69_37n	1	known	silent	c.591	p.T197	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	19	0	0	21	5	19.23	-	-	-	A	51647820	C	A	51647820	2	1	834	1	0	0	0	0	0	0	0	1	14402	610	22	4		4	SIGLEC7	19	51647820	Silent	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	2543276	51647820	7481163	92	69926										
ZBP1	0	genome.wustl.edu	37	chr20	56186796	56186797	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	agttacctggggggctgccaINSggggggatgtgggcagggcc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	20	56186796	56186797	-	G	INS	ZBP1	ENST00000343535	human	ensembl	69_37n	-1	known	frame_shift_ins	c.861_860	p.G288fs	0.000:0.000	NULL	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256	20	0	0	13	2	13.33	-	-	-	G	56186797	-	G	56186796	7	5	834	1	0	1	1	0	0	0	0	0	17617	175	7	0	440	0	ZBP1	20	56186796	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		56186796	6838724	93	69927										
C21orf58	0	genome.wustl.edu	37	chr21	47734733	47734734	+	Frame_Shift_Ins	INS	-	-	AT													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gggcagggctgacccgagggINSctcctctgcttggcccgctc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	21	47734733	47734734	-	AT	INS	C21orf58	ENST00000291691	human	ensembl	69_37n	-1	known	frame_shift_ins	c.506_505	p.A169fs	0.003:0.000	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298	14	0	0	3	5	62.5	-	-	-	AT	47734734	-	AT	47734733	7	5	834	1	0	1	1	0	0	0	0	0	2149	1203	42	0	478	0	C21orf58	21	47734733	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09		47734733	395162	94	69928										
PPIL2	0	genome.wustl.edu	37	chr22	22051065	22051065	+	Frame_Shift_Del	DEL	T	T	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggctgtacctctgcccttccTtttctcatcaatcactgatg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	22	22051065	22051065	T	-	DEL	PPIL2	ENST00000456792	human	ensembl	69_37n	1	known	frame_shift_del	c.1432	p.S479fs	0.001	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	24	0	0	9	2	18.18	-	-	-	-	22051065	T	-	22051065	7	5	834	1	0	1	0	1	0	0	0	0	12404	1624	56	0		0	PPIL2	22	22051065	Frame_Shift_Del	DEL	T	TCGA-E9-A1NC-01A-12W-A16L-09		22051065	29253501	95	69929										
PPM1F	0	genome.wustl.edu	37	chr22	22279889	22279889	+	Frame_Shift_Del	DEL	C	C	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gccgcgggccacactcgaggCctgggcttccgagagacctt							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	22	22279889	22279889	C	-	DEL	PPM1F	ENST00000397495	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1038	p.R346fs	0.019	smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	19	0	0	12	15	53.57	-	-	-	-	22279889	C	-	22279889	7	5	834	1	0	1	0	1	0	0	0	0	12416	754	26	0		0	PPM1F	22	22279889	Frame_Shift_Del	DEL	C	TCGA-E9-A1NC-01A-12W-A16L-09	228824	22279889	29024677	96	69930										
GCAT	0	genome.wustl.edu	37	chr22	38212267	38212267	+	Frame_Shift_Del	DEL	C	C	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggagccagtcaccccatctgCcctgtgatgctgggtgatgc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	22	38212267	38212267	C	-	DEL	GCAT	ENST00000248924	human	ensembl	69_37n	1	known	frame_shift_del	c.1047	p.P350fs	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_2am3keto_CoA_ligase	-	no_errors	GCAT	HGNC	ENSG00000100116	15	0	0	7	2	22.22	-	-	-	-	38212267	C	-	38212267	7	5	834	1	0	1	0	1	0	0	0	0	6334	747	26	0	1155	0	GCAT	22	38212267	Frame_Shift_Del	DEL	C	TCGA-E9-A1NC-01A-12W-A16L-09	15932378	38212267	13092299	97	69931										
TUBGCP6	0	genome.wustl.edu	37	chr22	50664338	50664339	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ggagaaaatcaccgagatccINSgggggacagggacgtcggac							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	22	50664338	50664339	-	G	INS	TUBGCP6	ENST00000248846	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1868_1867	p.R623fs	0.996:0.996	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	34	0	0	15	2	11.76	-	-	-	G	50664339	-	G	50664338	7	5	834	1	0	1	1	0	0	0	0	0	16867	652	23	0	3655	0	TUBGCP6	22	50664338	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	12452071	50664338	640228	98	69932										
GATA1	0	genome.wustl.edu	37	chrX	48652249	48652249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tggtattcagactcgaaaccGcaaggcatctggaaaaggga	12	8	2	1			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	48652249	48652249	G	A	SNP	GATA1	ENST00000376670	human	ensembl	69_37n	1	known	missense	c.920	p.R307H	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145	18	0	0	33	8	19.51	-	-	-	A	48652249	G	A	48652249	3	1	834	1	0	0	0	0	1	0	0	0	6303	1087	38	1	938	1	GATA1	23	48652249	Missense_Mutation	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09		48652249	106618311	99	69933										
MAGED2	0	genome.wustl.edu	37	chrX	54836184	54836184	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcagaaaaggacagtagctcGatgatgcagactctgttgac	11	8	2	4			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	54836184	54836184	G	T	SNP	MAGED2	ENST00000218439	human	ensembl	69_37n	1	known	silent	c.75	p.S25	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	76	0	0	148	44	22.92	-	-	-	T	54836184	G	T	54836184	2	4	834	1	0	0	0	0	0	0	0	1	9255	1045	37	3		3	MAGED2	23	54836184	Silent	SNP	G	TCGA-E9-A1NC-01A-12W-A16L-09	6183935	54836184	100434376	100	69934										
ZC3H12B	0	genome.wustl.edu	37	chrX	64722292	64722293	+	Frame_Shift_Ins	INS	-	-	G													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	ttacatggctgaagtagaccINSggggggtgtatgcccggaat							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	64722292	64722293	-	G	INS	ZC3H12B	ENST00000338957	human	ensembl	69_37n	1	known	frame_shift_ins	c.1714_1715	p.V574fs	0.985:0.018	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	28	0	0	18	2	10	-	-	-	G	64722293	-	G	64722292	7	5	834	1	0	1	1	0	0	0	0	0	17658	643	23	0	1732	0	ZC3H12B	23	64722292	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	9886108	64722292	90548268	101	69935										
ATG4A	0	genome.wustl.edu	37	chrX	107374543	107374543	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	gatgtatgctacgctgtggaCagatgatgctggctcaagcc	13	9	1	2			TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	107374543	107374543	C	G	SNP	ATG4A	ENST00000372232	human	ensembl	69_37n	1	known	missense	c.247	p.Q83E	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	99	0	0	61	17	21.79	-	-	-	G	107374543	C	G	107374543	3	3	834	1	0	0	0	0	1	0	0	0	1100	479	17	4	261	4	ATG4A	23	107374543	Missense_Mutation	SNP	C	TCGA-E9-A1NC-01A-12W-A16L-09	42652251	107374543	47896017	102	69936										
IRS4	0	genome.wustl.edu	37	chrX	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	tcccacttcctgagcctttgINSccccccccagagttcttgcc							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	72	0	0	58	11	15.94	-	-	-	C	107977803	-	C	107977802	7	5	834	1	0	1	1	0	0	0	0	0	7896	1306	46	0	2004	0	IRS4	23	107977802	Frame_Shift_Ins	INS	-	TCGA-E9-A1NC-01A-12W-A16L-09	603259	107977802	47292758	103	69937										
FAM50A	0	genome.wustl.edu	37	chrX	153674884	153674884	+	Frame_Shift_Del	DEL	T	T	-													0.058252427184466	6	0.260482716001278	1.93148148148148	3.31111111111111	1.36339869281046	1	1	0	aggaagaggaggcggccatgTatgaggaggagatggaaagg							TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	153674884	153674884	T	-	DEL	FAM50A	ENST00000393600	human	ensembl	69_37n	1	known	frame_shift_del	c.418	p.Y140fs	0.031	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50A	HGNC	ENSG00000071859	54	0	0	16	2	11.11	-	-	-	-	153674884	T	-	153674884	7	5	834	1	0	1	0	1	0	0	0	0	5623	1638	57	0	432	0	FAM50A	23	153674884	Frame_Shift_Del	DEL	T	TCGA-E9-A1NC-01A-12W-A16L-09	45697082	153674884	1595676	104	69938										
TRIT1	0	genome.wustl.edu	37	chr1	40307439	40307439	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aacgctgcatttcagctcttGatcattctgccctggggatc	9	12	4	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	40307439	40307439	G	C	SNP	TRIT1	ENST00000316891	human	ensembl	69_37n	-1	known	missense	c.1381	p.Q461E	0.000	NULL	pfam_IPPT,pfam_Isopentenyl_transferase,pfam_Znf_C2H2_jaz,smart_Znf_U1,tigrfam_tRNA_delta_PyrP_Trfase	-	no_errors	TRIT1	HGNC	ENSG00000043514	124	0	0	84	17	16.83	-	-	-	C	40307439	G	C	40307439	3	2	835	1	0	0	0	0	1	0	0	0	16656	1299	45	2	26	2	TRIT1	1	40307439	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		40307439	208943182	1	69939										
OMA1	0	genome.wustl.edu	37	chr1	58999654	58999654	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aagtactgcatgtgctatttCatggcccagaaggaaagaaa	10	7	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	58999654	58999654	C	T	SNP	OMA1	ENST00000371226	human	ensembl	69_37n	-1	known	missense	c.982	p.E328K	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	59	0	0	25	15	37.5	-	-	-	T	58999654	C	T	58999654	3	4	835	1	0	0	0	0	1	0	0	0	10937	835	29	2	612	2	OMA1	1	58999654	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	18692215	58999654	190250967	2	69940										
CHD1L	0	genome.wustl.edu	37	chr1	146758174	146758174	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	atgctctcattgtgcactgcGtaggtacgagaagtggtatg	13	7	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	146758174	146758174	G	C	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.2218	p.V740L	0.998	pfscan_A1pp	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	84	0	0	21	18	46.15	-	-	-	C	146758174	G	C	146758174	3	2	835	1	0	0	0	0	1	0	0	0	3353	1145	40	3	2288	3	CHD1L	1	146758174	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	87758520	146758174	102492447	3	69941										
DARS2	0	genome.wustl.edu	37	chr1	173826805	173826805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	agccctatcatatccgagtcTccaagccaacagactccaaa	5	15	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	173826805	173826805	T	A	SNP	DARS2	ENST00000361951	human	ensembl	69_37n	1	known	missense	c.1900	p.S634T	0.397	tigrfam_Asp-tRNA-synth_IIb_bac/mt	pfam_aa-tRNA-synt_II,pfam_GAD_dom,pfam_NA-bd_OB_tRNA-helicase,superfamily_GAD_dom,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-synth_IIb_bac/mt	-	no_errors	DARS2	HGNC	ENSG00000117593	33	0	0	42	7	14	-	-	-	A	173826805	T	A	173826805	3	1	835	1	0	0	0	0	1	0	0	0	4274	1551	54	5	1966	5	DARS2	1	173826805	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	27068631	173826805	75423816	4	69942										
TNN	0	genome.wustl.edu	37	chr1	175052955	175052955	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ccttgacgtggagtgggaaaAcccctcaactgaggtggact	13	10	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	175052955	175052955	A	C	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.1118	p.N373T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	45	0	0	17	6	26.09	-	-	-	C	175052955	A	C	175052955	3	2	835	1	0	0	0	0	1	0	0	0	16418	43	2	5	1132	5	TNN	1	175052955	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	1226150	175052955	74197666	5	69943										
KCNT2	0	genome.wustl.edu	37	chr1	196251440	196251440	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	atcctggtgtagtgtccagtCccaacagaagtctcgtgata	10	10	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	196251440	196251440	C	A	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.2744	p.G915V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	74	0	0	46	11	19.3	-	-	-	A	196251440	C	A	196251440	3	1	835	1	0	0	0	0	1	0	0	0	8146	855	30	2	683	2	KCNT2	1	196251440	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	21198485	196251440	52999181	6	69944										
RYR2	0	genome.wustl.edu	37	chr1	237948029	237948029	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aacatgccagaccccactcaGgatgaggttagaggagatgg	13	9	1	4			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	237948029	237948029	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.13035	p.Q4345	1.000	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	59	0	0	16	11	40.74	-	-	-	A	237948029	G	A	237948029	2	1	835	1	0	0	0	0	0	0	0	1	13855	991	35	4		4	RYR2	1	237948029	Silent	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	41696589	237948029	11302592	7	69945										
NLRP3	0	genome.wustl.edu	37	chr1	247582310	247582310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	agaaggcgtgggccatggccGtgtggatcttcgctgcgatc	16	10	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	1	247582310	247582310	G	A	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.214	p.V72M	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	40	0	0	15	8	34.78	-	-	-	A	247582310	G	A	247582310	3	1	835	1	0	0	0	0	1	0	0	0	10550	1145	40	1	216	1	NLRP3	1	247582310	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	9634281	247582310	1668311	8	69946										
ZNF804A	0	genome.wustl.edu	37	chr2	185803708	185803708	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	catgcactctttccttcactGctttccccacaccctactgt	3	18	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	185803708	185803708	G	T	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	1	known	silent	c.3585	p.L1195	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	154	0	0	119	14	10.53	-	-	-	T	185803708	G	T	185803708	2	4	835	1	0	0	0	0	0	0	0	1	18263	1306	46	4		4	ZNF804A	2	185803708	Silent	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		185803708	57395665	9	69947										
PMS1	0	genome.wustl.edu	37	chr2	190682787	190682787	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tatttaagaatctacctgtaAgaaagcagttttactcaact	5	7	2	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	190682787	190682787	A	T	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	nonsense	c.463	p.R155*	1.000	superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	32	0	0	27	9	25	-	-	-	T	190682787	A	T	190682787	4	4	835	1	0	0	0	0	0	1	0	0	12216	64	3	5	477	5	PMS1	2	190682787	Nonsense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	4879079	190682787	52516586	10	69948										
TRIP12	0	genome.wustl.edu	37	chr2	230661314	230661315	+	Frame_Shift_Ins	INS	-	-	A													0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tagataacttactggagaagINSaaaaaaatacatgaagaaat							TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	230661314	230661315	-	A	INS	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3584_3583	p.S1195fs	1.000:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	74	0	0	40	9	18.37	-	-	-	A	230661315	-	A	230661314	7	5	835	1	0	1	1	0	0	0	0	0	16652	942	33	0	2466	0	TRIP12	2	230661314	Frame_Shift_Ins	INS	-	TCGA-E9-A1ND-01A-11D-A142-09	39978527	230661314	12538059	11	69949										
DGKD	0	genome.wustl.edu	37	chr2	234359581	234359581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gttacagtgtcgaaatctccGtgtgaaaagctgatcagcaa	10	8	2	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	2	234359581	234359581	G	A	SNP	DGKD	ENST00000430834	human	ensembl	69_37n	1	known	missense	c.1034	p.R345H	0.003	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DGKD	HGNC	ENSG00000077044	45	0	0	16	10	38.46	-	-	-	A	234359581	G	A	234359581	3	1	835	1	0	0	0	0	1	0	0	0	4503	1132	40	1	2142	1	DGKD	2	234359581	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	3698267	234359581	8839792	12	69950										
PDCD6IP	0	genome.wustl.edu	37	chr3	33905540	33905540	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	agagaacctagtgctccttcAattcctacacctgcgtatca	6	13	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	33905540	33905540	A	G	SNP	PDCD6IP	ENST00000457054	human	ensembl	69_37n	1	known	silent	c.2178	p.S726	0.196	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	58	0	0	20	7	25.93	-	-	-	G	33905540	A	G	33905540	2	3	835	1	0	0	0	0	0	0	0	1	11697	117	5	5		5	PDCD6IP	3	33905540	Silent	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09		33905540	164116890	13	69951										
HHLA2	0	genome.wustl.edu	37	chr3	108094632	108094632	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ggaggagcagacaccctgctGatggagcccaacaaggtcag	14	11	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	108094632	108094632	G	T	SNP	HHLA2	ENST00000357759	human	ensembl	69_37n	1	known	missense	c.1144	p.D382Y	0.000	NULL	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	HHLA2	HGNC	ENSG00000114455	79	0	0	38	7	15.56	-	-	-	T	108094632	G	T	108094632	3	4	835	1	0	0	0	0	1	0	0	0	7146	1290	45	2	1166	2	HHLA2	3	108094632	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	74189092	108094632	89927798	14	69952										
SEMA5B	0	genome.wustl.edu	37	chr3	122630348	122630348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tttcttttacctgcacagtcGgtggcctcctccatgctgga	9	13	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	122630348	122630348	G	A	SNP	SEMA5B	ENST00000451541	human	ensembl	69_37n	-1	putative	missense	c.218	p.P73L	0.489	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEMA5B	HGNC	ENSG00000082684	50	0	0	14	7	33.33	-	-	-	A	122630348	G	A	122630348	3	1	835	1	0	0	0	0	1	0	0	0	14126	1103	39	1	386	1	SEMA5B	3	122630348	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	14535716	122630348	75392082	15	69953										
GOLIM4	0	genome.wustl.edu	37	chr3	167750551	167750551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gggggagcctgaaattctgcCtccttatgggtgggagcata	15	8	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	3	167750551	167750551	C	G	SNP	GOLIM4	ENST00000470487	human	ensembl	69_37n	-1	known	missense	c.933	p.E311D	0.001	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905	87	0	0	41	8	16.33	-	-	-	G	167750551	C	G	167750551	3	3	835	1	0	0	0	0	1	0	0	0	6615	680	24	4	1189	4	GOLIM4	3	167750551	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	45120203	167750551	30271879	16	69954										
UBA6	0	genome.wustl.edu	37	chr4	68494810	68494810	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ttattggaaggcttgaattcCtgaatctttacttctgaaag	8	6	2	3			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	4	68494810	68494810	C	G	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.2379	p.Q793H	0.991	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	57	0	0	30	11	26.83	-	-	-	G	68494810	C	G	68494810	3	3	835	1	0	0	0	0	1	0	0	0	16929	680	24	4	807	4	UBA6	4	68494810	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		68494810	122659466	17	69955										
WDR17	0	genome.wustl.edu	37	chr4	177072997	177072997	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	actaacaacagtcaagatgtCtaaatttggtggtggtattg	10	5	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	4	177072997	177072997	C	G	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.2411	p.S804C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	78	0	0	56	20	26.32	-	-	-	G	177072997	C	G	177072997	3	3	835	1	0	0	0	0	1	0	0	0	17374	913	32	2	2477	2	WDR17	4	177072997	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	108578187	177072997	14081279	18	69956										
CD109	0	genome.wustl.edu	37	chr6	74466405	74466405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	catttcaggtttcagaatatGgtaagagttcctcaatctat	7	7	4	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	6	74466405	74466405	G	A	SNP	CD109	ENST00000287097	human	ensembl	69_37n	1	known	missense	c.673	p.V225I	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535	83	0	0	48	20	29.41	-	-	-	A	74466405	G	A	74466405	3	1	835	1	0	0	0	0	1	0	0	0	2992	1362	47	4	695	4	CD109	6	74466405	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		74466405	96648662	19	69957										
BET3L	0	genome.wustl.edu	37	chr6	116861558	116861558	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gtctataatttctgaataacTatggcatcttcccacgcagg	7	10	3	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	6	116861558	116861558	T	C	SNP	BET3L	ENST00000368602	human	ensembl	69_37n	-1	known	missense	c.208	p.S70G	0.994	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	-	no_errors	BET3L	HGNC	ENSG00000173626	36	0	0	25	9	26.47	-	-	-	C	116861558	T	C	116861558	3	2	835	1	0	0	0	0	1	0	0	0	1414	1522	53	5	349	5	BET3L	6	116861558	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	42395153	116861558	54253509	20	69958										
POM121	0	genome.wustl.edu	37	chr7	72418986	72418986	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cacggagaggacaggcatctTcctttcccaccaggaaggag	12	12	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	72418986	72418986	T	A	SNP	POM121	ENST00000395270	human	ensembl	69_37n	1	known	missense	c.2977	p.S993T	0.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	89	0	0	61	16	20.78	-	-	-	A	72418986	T	A	72418986	3	1	835	1	0	0	0	0	1	0	0	0	12313	1798	62	5		5	POM121	7	72418986	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09		72418986	86719677	21	69959										
PCLO	0	genome.wustl.edu	37	chr7	82784526	82784526	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ggctgttgaggtgggggcttTgctgggccaggcagttgtga	20	6	0	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	82784526	82784526	T	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	silent	c.1431	p.A477	0.010	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	37	0	0	66	9	12	-	-	-	C	82784526	T	C	82784526	2	2	835	1	0	0	0	0	0	0	0	1	11656	1799	63	5		5	PCLO	7	82784526	Silent	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	10365540	82784526	76354137	22	69960										
TRRAP	0	genome.wustl.edu	37	chr7	98528347	98528347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tgcaaagctggggggtgtggTgtctattaagtttctcatgg	15	5	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	98528347	98528347	T	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.3485	p.V1162A	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	110	0	0	72	19	20.88	-	-	-	C	98528347	T	C	98528347	3	2	835	1	0	0	0	0	1	0	0	0	16697	1696	59	5	3579	5	TRRAP	7	98528347	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	15743821	98528347	60610316	23	69961										
MUC17	0	genome.wustl.edu	37	chr7	100681604	100681604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ttagcaccctttcaacaactCctgttgactccaacactcct	3	16	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	100681604	100681604	C	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6907	p.P2303T	0.596	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	40	0	0	90	11	10.89	-	-	-	A	100681604	C	A	100681604	3	1	835	1	0	0	0	0	1	0	0	0	10046	855	30	2	6917	2	MUC17	7	100681604	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	2153257	100681604	58457059	24	69962										
RELN	0	genome.wustl.edu	37	chr7	103214716	103214716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cgaacatctcattgtgattgGggacatttgacacacaggtt	10	8	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	103214716	103214716	G	A	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.4334	p.P1445L	0.998	superfamily_Growth_fac_rcpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	65	0	0	29	11	27.5	-	-	-	A	103214716	G	A	103214716	3	1	835	1	0	0	0	0	1	0	0	0	13303	1232	43	4	6192	4	RELN	7	103214716	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	2533112	103214716	55923947	25	69963										
CHRM2	0	genome.wustl.edu	37	chr7	136700646	136700646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cccaactaataccaccgtggAggtagtggggtcttcaggtc	12	11	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	136700646	136700646	A	G	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	missense	c.1034	p.E345G	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	38	0	0	27	6	18.18	-	-	-	G	136700646	A	G	136700646	3	3	835	1	0	0	0	0	1	0	0	0	3406	304	11	5	1036	5	CHRM2	7	136700646	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	33485930	136700646	22438017	26	69964										
FASTK	0	genome.wustl.edu	37	chr7	150774317	150774317	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cagagctgctggcgcacagcAggaagtctggaggggagcag	18	9	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	7	150774317	150774317	A	T	SNP	FASTK	ENST00000297532	human	ensembl	69_37n	-1	known	missense	c.1298	p.L433Q	0.993	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896	10	0	0	25	5	16.67	-	-	-	T	150774317	A	T	150774317	3	4	835	1	0	0	0	0	1	0	0	0	5730	188	7	5	363	5	FASTK	7	150774317	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	14073671	150774317	8364346	27	69965										
KIAA1967	0	genome.wustl.edu	37	chr8	22470552	22470552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	atgactatgactccaagaaaCgcaaacagcgggctggtgga	12	9	0	3			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	8	22470552	22470552	C	T	SNP	KIAA1967	ENST00000308511	human	ensembl	69_37n	1	known	missense	c.607	p.R203C	1.000	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	KIAA1967	HGNC	ENSG00000158941	27	0	0	25	6	19.35	-	-	-	T	22470552	C	T	22470552	3	4	835	1	0	0	0	0	1	0	0	0	8317	536	19	1	633	1	KIAA1967	8	22470552	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		22470552	123893470	28	69966										
GRINA	0	genome.wustl.edu	37	chr8	145066211	145066211	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tcctcagctgttgtggggacTtccggcgaaagcacccctgg	13	13	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	8	145066211	145066211	T	G	SNP	GRINA	ENST00000313269	human	ensembl	69_37n	1	known	missense	c.658	p.F220V	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	GRINA	HGNC	ENSG00000178719	40	0	0	50	6	10.71	-	-	-	G	145066211	T	G	145066211	3	3	835	1	0	0	0	0	1	0	0	0	6836	1609	56	5	668	5	GRINA	8	145066211	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	122595659	145066211	1297811	29	69967										
CHST15	0	genome.wustl.edu	37	chr10	125771954	125771954	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cttgtcaaaaacgctgagccAgtccagaaggtacacagcat	9	11	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	10	125771954	125771954	A	T	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	missense	c.1390	p.W464R	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	84	0	0	23	4	14.81	-	-	-	T	125771954	A	T	125771954	3	4	835	1	0	0	0	0	1	0	0	0	3432	188	7	5	303	5	CHST15	10	125771954	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09		125771954	9762793	30	69968										
MUC5B	0	genome.wustl.edu	37	chr11	1266156	1266156	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	acaccctcctctagcacacaGaccagtggtactcccccatc	5	19	1	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	11	1266156	1266156	G	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8055	p.Q2685H	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	30	0	0	30	11	26.83	-	-	-	C	1266156	G	C	1266156	3	2	835	1	0	0	0	0	1	0	0	0	10051	933	33	2	8177	2	MUC5B	11	1266156	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		1266156	133740360	31	69969										
PGR	0	genome.wustl.edu	37	chr11	100922227	100922227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tgtaggatctccatcctagaCcaaacaccattaagctcatc	5	13	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	11	100922227	100922227	C	A	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.2285	p.G762V	0.995	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	60	0	0	36	11	23.4	-	-	-	A	100922227	C	A	100922227	3	1	835	1	0	0	0	0	1	0	0	0	11879	507	18	4	532	4	PGR	11	100922227	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	99656071	100922227	34084289	32	69970										
A2M	0	genome.wustl.edu	37	chr12	9242989	9242989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	actgcccaggacacagtttgCcgcccgtttgcacagatgca	10	14	0	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	9242989	9242989	C	T	SNP	A2M	ENST00000543436	human	ensembl	69_37n	-1	putative	missense	c.302	p.G101D	0.385	pfam_SV_autoAg	pfam_Macroglobln_a2,pfam_SV_autoAg	-	no_start_codon:pseudogene:no_stop_codon	A2M	HGNC	ENSG00000175899	105	0	0	54	9	14.29	-	-	-	T	9242989	C	T	9242989	3	4	835	1	0	0	0	0	1	0	0	0	4	726	26	4	1933	4	A2M	12	9242989	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		9242989	124608906	33	69971										
LYRM5	0	genome.wustl.edu	37	chr12	25356905	25356908	+	Frame_Shift_Del	DEL	TTCT	TTCT	-													0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tgataaatgaaaatggccaaTtctttaagaggagaagtact							TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	TTCT	TTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	25356905	25356908	TTCT	-	DEL	LYRM5	ENST00000381356	human	ensembl	69_37n	1	known	frame_shift_del	c.15_18	p.S6fs	1.000:1.000:1.000:0.992	NULL	pfam_Complex1_LYR	-	no_errors	LYRM5	HGNC	ENSG00000205707	61	0	0	33	6	15.38	-	-	-	-	25356908	TTCT	-	25356905	7	5	835	1	0	1	0	1	0	0	0	0	9189	1490	52	0	17	0	LYRM5	12	25356905	Frame_Shift_Del	DEL	TTCT	TCGA-E9-A1ND-01A-11D-A142-09	16113916	25356905	108494990	34	69972										
PKP2	0	genome.wustl.edu	37	chr12	32949226	32949226	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aaaccaaatcagggagagttTctttggctacaaaatgaaaa	8	6	2	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	32949226	32949226	T	C	SNP	PKP2	ENST00000070846	human	ensembl	69_37n	-1	known	missense	c.2306	p.E769G	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294	37	0	0	38	8	17.39	-	-	-	C	32949226	T	C	32949226	3	2	835	1	0	0	0	0	1	0	0	0	12059	1783	62	5	351	5	PKP2	12	32949226	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	7592321	32949226	100902669	35	69973										
ATF1	0	genome.wustl.edu	37	chr12	51207889	51207889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	catgacaaattcaggcagtaCtcagcaaggtacaactattc	7	10	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	51207889	51207889	C	T	SNP	ATF1	ENST00000262053	human	ensembl	69_37n	1	known	missense	c.425	p.T142I	0.927	NULL	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268	38	0	0	34	9	20.93	-	-	-	T	51207889	C	T	51207889	3	4	835	1	0	0	0	0	1	0	0	0	1083	565	20	4	439	4	ATF1	12	51207889	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09	18258663	51207889	82644006	36	69974										
ZFC3H1	0	genome.wustl.edu	37	chr12	72009006	72009006	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cagtaaatcagccacaaataAggaacttggtggttaaacat	8	7	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	72009006	72009006	A	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	69_37n	-1	known	silent	c.5235	p.P1745	0.999	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	65	0	0	28	21	42.86	-	-	-	C	72009006	A	C	72009006	2	2	835	1	0	0	0	0	0	0	0	1	17729	59	3	5		5	ZFC3H1	12	72009006	Silent	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	20801117	72009006	61842889	37	69975										
SPPL3	0	genome.wustl.edu	37	chr12	121222339	121222339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	agaagaacattactaaaagaGagacagatgctccaattgga	9	6	0	5			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	12	121222339	121222339	G	C	SNP	SPPL3	ENST00000353487	human	ensembl	69_37n	-1	known	missense	c.248	p.S83C	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	SPPL3	HGNC	ENSG00000157837	61	0	0	14	15	51.72	-	-	-	C	121222339	G	C	121222339	3	2	835	1	0	0	0	0	1	0	0	0	15181	942	33	2	938	2	SPPL3	12	121222339	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	49213333	121222339	12629556	38	69976										
DIAPH3	0	genome.wustl.edu	37	chr13	60407364	60407364	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tccatgttttcgtgtaacttCgaaagtgtctcatattgttc	7	8	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	13	60407364	60407364	C	T	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	silent	c.2904	p.S968	0.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	83	0	0	48	10	17.24	-	-	-	T	60407364	C	T	60407364	2	4	835	1	0	0	0	0	0	0	0	1	4556	871	31	1		1	DIAPH3	13	60407364	Silent	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		60407364	54762514	39	69977										
CATSPERB	0	genome.wustl.edu	37	chr14	92047329	92047329	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	catctttggaatgtcctccaCggatggatgccttgcagttg	11	10	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	14	92047329	92047329	C	T	SNP	CATSPERB	ENST00000256343	human	ensembl	69_37n	-1	known	silent	c.3255	p.P1085	0.000	NULL	superfamily_Neuraminidase	-	no_errors	CATSPERB	HGNC	ENSG00000133962	109	0	0	38	27	41.54	-	-	-	T	92047329	C	T	92047329	2	4	835	1	0	0	0	0	0	0	0	1	2716	523	19	1		1	CATSPERB	14	92047329	Silent	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		92047329	15302211	40	69978										
AGBL1	0	genome.wustl.edu	37	chr15	86940618	86940618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	acatcgtccatatcaggtgaTcactgctcgagttcatccag	8	12	3	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	15	86940618	86940618	T	C	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	missense	c.2258	p.I753T	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	72	0	0	34	5	12.82	-	-	-	C	86940618	T	C	86940618	3	2	835	1	0	0	0	0	1	0	0	0	375	1435	50	5	2320	5	AGBL1	15	86940618	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09		86940618	15590774	41	69979										
LONP2	0	genome.wustl.edu	37	chr16	48304031	48304031	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	acttggctgtcagacagctcAaaaataacctgaagggccca	9	11	2	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	48304031	48304031	A	G	SNP	LONP2	ENST00000285737	human	ensembl	69_37n	1	known	missense	c.1087	p.K363E	1.000	tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC	ENSG00000102910	59	0	0	33	5	13.16	-	-	-	G	48304031	A	G	48304031	3	3	835	1	0	0	0	0	1	0	0	0	8959	131	5	5	1113	5	LONP2	16	48304031	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09		48304031	42050722	42	69980										
MT1M	0	genome.wustl.edu	37	chr16	56666647	56666647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ccttaccgcggctcgaaatgGaccccaactgctcctgcacc	8	18	0	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	56666647	56666647	G	A	SNP	MT1M	ENST00000379818	human	ensembl	69_37n	1	known	missense	c.4	p.D2N	0.967	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1M	HGNC	ENSG00000205364	49	0	0	14	10	41.67	-	-	-	A	56666647	G	A	56666647	3	1	835	1	0	0	0	0	1	0	0	0	9975	1174	41	2	6	2	MT1M	16	56666647	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	8362616	56666647	33688106	43	69981										
ST3GAL2	0	genome.wustl.edu	37	chr16	70432295	70432295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gccgggcaccagcttcacccGgtgcgtcccatccagggccc	12	19	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	16	70432295	70432295	G	A	SNP	ST3GAL2	ENST00000342907	human	ensembl	69_37n	-1	known	missense	c.139	p.R47W	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL2	HGNC	ENSG00000157350	15	0	0	14	7	33.33	-	-	-	A	70432295	G	A	70432295	3	1	835	1	0	0	0	0	1	0	0	0	15306	1115	39	1	937	1	ST3GAL2	16	70432295	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	13765648	70432295	19922458	44	69982										
SLC25A11	0	genome.wustl.edu	37	chr17	4841331	4841331	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tcctcaccagcccgttcttgTattccggcttcccatcaatc	5	17	3	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	4841331	4841331	T	C	SNP	SLC25A11	ENST00000225665	human	ensembl	69_37n	-1	known	missense	c.776	p.Y259C	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A11	HGNC	ENSG00000108528	49	0	0	44	7	13.73	-	-	-	C	4841331	T	C	4841331	3	2	835	1	0	0	0	0	1	0	0	0	14562	1638	57	5	176	5	SLC25A11	17	4841331	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09		4841331	76353879	45	69983										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	163	0	0	36	15	29.41	-	-	-	C	7578190	T	C	7578190	3	2	835	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	2736859	7578190	73617020	46	69984										
FBXW10	0	genome.wustl.edu	37	chr17	18670066	18670066	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gaagtgcctgaagacgtttaGacacaaagaccccatcttgg	10	10	1	4			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	18670066	18670066	G	C	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	1	known	missense	c.1682	p.R561T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW10	HGNC	ENSG00000171931	129	0	0	77	17	18.09	-	-	-	C	18670066	G	C	18670066	3	2	835	1	0	0	0	0	1	0	0	0	5809	942	33	2	1629	2	FBXW10	17	18670066	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	11091876	18670066	62525144	47	69985										
KCNJ2	0	genome.wustl.edu	37	chr17	68171571	68171571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ccgaggtcaacagcttcacgGctgccttcctcttctccatt	7	16	4	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	68171571	68171571	G	A	SNP	KCNJ2	ENST00000243457	human	ensembl	69_37n	1	known	missense	c.391	p.A131T	0.999	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	59	0	0	35	9	20.45	-	-	-	A	68171571	G	A	68171571	3	1	835	1	0	0	0	0	1	0	0	0	8105	1203	42	4	393	4	KCNJ2	17	68171571	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	49501505	68171571	13023639	48	69986										
RPTOR	0	genome.wustl.edu	37	chr17	78897383	78897383	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gacttgccttctggccggccGggcaccacaggccccgctgg	14	17	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	17	78897383	78897383	G	A	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	silent	c.2718	p.P906	0.028	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	8	0	0	14	23	62.16	-	-	-	A	78897383	G	A	78897383	2	1	835	1	0	0	0	0	0	0	0	1	13751	1103	39	1		1	RPTOR	17	78897383	Silent	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	10725812	78897383	2297827	49	69987										
RPRD1A	0	genome.wustl.edu	37	chr18	33606996	33606996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aatctgccagcaacatacacGcatcctctaccattttggaa	5	13	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	33606996	33606996	G	A	SNP	RPRD1A	ENST00000357384	human	ensembl	69_37n	-1	known	missense	c.656	p.A219V	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1A	HGNC	ENSG00000141425	81	0	0	45	6	11.76	-	-	-	A	33606996	G	A	33606996	3	1	835	1	0	0	0	0	1	0	0	0	13701	1087	38	1	290	1	RPRD1A	18	33606996	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		33606996	44470252	50	69988										
CELF4	0	genome.wustl.edu	37	chr18	35145386	35145386	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	attttgccaaactcctcgaaGaggggcttgaggtccttctc	10	11	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	35145386	35145386	G	A	SNP	CELF4	ENST00000361795	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489	72	0	0	31	7	18.42	-	-	-	A	35145386	G	A	35145386	2	1	835	1	0	0	0	0	0	0	0	1	3247	929	33	2		2	CELF4	18	35145386	Silent	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	1538390	35145386	42931862	51	69989										
MYO5B	0	genome.wustl.edu	37	chr18	47518741	47518741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ccttttgtcaaagccaatctGgatgtacttgccaaaacggc	8	11	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	18	47518741	47518741	G	T	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.673	p.Q225K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	163	0	0	52	17	24.64	-	-	-	T	47518741	G	T	47518741	3	4	835	1	0	0	0	0	1	0	0	0	10151	1357	47	4	5013	4	MYO5B	18	47518741	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	12373355	47518741	30558507	52	69990										
ZNF121	0	genome.wustl.edu	37	chr19	9677328	9677328	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tattaagatatgaagaatatCtaaagaattttccacattcc	4	6	1	4			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	19	9677328	9677328	C	T	SNP	ZNF121	ENST00000320451	human	ensembl	69_37n	-1	known	missense	c.461	p.R154K	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961	45	0	0	47	8	14.55	-	-	-	T	9677328	C	T	9677328	3	4	835	1	0	0	0	0	1	0	0	0	17815	913	32	2	715	2	ZNF121	19	9677328	Missense_Mutation	SNP	C	TCGA-E9-A1ND-01A-11D-A142-09		9677328	49451655	53	69991										
ZNF274	0	genome.wustl.edu	37	chr19	58698334	58698334	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aacatcagctttccaaaccaGatgtggtatctcagttagag	8	9	2	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	19	58698334	58698334	G	C	SNP	ZNF274	ENST00000326804	human	ensembl	69_37n	1	known	missense	c.181	p.D61H	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606	21	0	0	18	15	45.45	-	-	-	C	58698334	G	C	58698334	3	2	835	1	0	0	0	0	1	0	0	0	17905	942	33	2	191	2	ZNF274	19	58698334	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	49021006	58698334	430649	54	69992										
DEFB129	0	genome.wustl.edu	37	chr20	210186	210186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cccccaaatcaaaagcactaGcttttttgctaataccaact	3	13	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	210186	210186	G	A	SNP	DEFB129	ENST00000246105	human	ensembl	69_37n	1	known	missense	c.326	p.S109N	0.000	NULL	NULL	-	no_errors	DEFB129	HGNC	ENSG00000125903	108	0	0	41	11	21.15	-	-	-	A	210186	G	A	210186	3	1	835	1	0	0	0	0	1	0	0	0	4450	971	34	4	332	4	DEFB129	20	210186	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		210186	62815334	55	69993										
STK35	0	genome.wustl.edu	37	chr20	2097914	2097914	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aaaaacgcaggacttccatgTctgaggggatcaagcagctc	11	10	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	2097914	2097914	T	G	SNP	STK35	ENST00000381482	human	ensembl	69_37n	1	known	missense	c.1495	p.S499A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK35	HGNC	ENSG00000125834	21	0	0	13	12	48	-	-	-	G	2097914	T	G	2097914	3	3	835	1	0	0	0	0	1	0	0	0	15392	1667	58	5	1505	5	STK35	20	2097914	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	1887728	2097914	60927606	56	69994										
ASXL1	0	genome.wustl.edu	37	chr20	31021612	31021612	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	gcctctgcatcctttcccgaAaagaagccccggcttgaaga	9	14	1	3			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	31021612	31021612	A	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	missense	c.1611	p.E537D	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	15	0	0	17	5	22.73	-	-	-	T	31021612	A	T	31021612	3	4	835	1	0	0	0	0	1	0	0	0	1070	11	1	5	1663	5	ASXL1	20	31021612	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	28923698	31021612	32003908	57	69995										
SEMG2	0	genome.wustl.edu	37	chr20	43851246	43851246	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	ctgaagagaaaatacatggcAagtctcaaaaccaggtaaca	8	8	1	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	43851246	43851246	A	C	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	missense	c.973	p.K325Q	0.002	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	41	0	0	41	6	12.77	-	-	-	C	43851246	A	C	43851246	3	2	835	1	0	0	0	0	1	0	0	0	14133	131	5	5	979	5	SEMG2	20	43851246	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	12829634	43851246	19174274	58	69996										
ZNF335	0	genome.wustl.edu	37	chr20	44598176	44598176	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	aggaagctgtgcagtcggacAccagcatgttggggtctggg	17	8	1	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	20	44598176	44598176	A	G	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	missense	c.356	p.V119A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	14	0	0	9	7	43.75	-	-	-	G	44598176	A	G	44598176	3	3	835	1	0	0	0	0	1	0	0	0	17948	159	6	5	3776	5	ZNF335	20	44598176	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	746930	44598176	18427344	59	69997										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29301321	29301321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tacaggacagtggtctctacGcctgtgtcatcaggtatccc	10	12	3	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	29301321	29301321	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.349	p.A117T	0.985	smart_Ig_sub,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	40	0	0	29	13	30.95	-	-	-	A	29301321	G	A	29301321	3	1	835	1	0	0	0	0	1	0	0	0	7715	1087	38	1	355	1	IL1RAPL1	23	29301321	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09		29301321	125969239	60	69998										
AKAP4	0	genome.wustl.edu	37	chrX	49957994	49957994	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tctgattcctgcatttgggaTcatgggacccagcttttaaa	9	9	2	1			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	49957994	49957994	T	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1370	p.D457V	0.070	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	98	0	0	43	8	15.69	-	-	-	A	49957994	T	A	49957994	3	1	835	1	0	0	0	0	1	0	0	0	453	1435	50	5	1202	5	AKAP4	23	49957994	Missense_Mutation	SNP	T	TCGA-E9-A1ND-01A-11D-A142-09	20656673	49957994	105312566	61	69999										
OPHN1	0	genome.wustl.edu	37	chrX	67417078	67417078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tagccttctgttagcttctgAaagggcctgcagagtgatgg	13	8	2	3			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	67417078	67417078	A	G	SNP	OPHN1	ENST00000355520	human	ensembl	69_37n	-1	known	missense	c.1054	p.S352P	0.997	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	108	0	0	47	12	20.34	-	-	-	G	67417078	A	G	67417078	3	3	835	1	0	0	0	0	1	0	0	0	10948	246	9	5	1406	5	OPHN1	23	67417078	Missense_Mutation	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	17459084	67417078	87853482	62	70000										
LRCH2	0	genome.wustl.edu	37	chrX	114414224	114414224	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	cttaccatctggcaaaacatGaagattatttcttcttatat	4	8	3	2			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	114414224	114414224	G	T	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.712	p.H238N	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	45	0	0	42	8	16	-	-	-	T	114414224	G	T	114414224	3	4	835	1	0	0	0	0	1	0	0	0	8999	1290	45	2	1657	2	LRCH2	23	114414224	Missense_Mutation	SNP	G	TCGA-E9-A1ND-01A-11D-A142-09	46997146	114414224	40856336	63	70001										
L1CAM	0	genome.wustl.edu	37	chrX	153129922	153129922	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140625	9	0.0831433888061557	2.13050847457627	4.73446327683616	1.01452784503632	0.386996904024768	0.991179622791967	0	tgtggcgaaagggaagccccAcccttctcttctgccaggga	12	13	2	0			TCGA-E9-A1ND-01A-11D-A142-09	TCGA-E9-A1ND-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e72652d-3b99-47b2-87fe-04b96b243722	c2ad1535-c9a1-410e-9684-a1d0422a02bf	X	153129922	153129922	A	G	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	silent	c.3183	p.G1061	0.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	24	0	0	26	5	15.62	-	-	-	G	153129922	A	G	153129922	2	3	835	1	0	0	0	0	0	0	0	1	8642	146	6	5		5	L1CAM	23	153129922	Silent	SNP	A	TCGA-E9-A1ND-01A-11D-A142-09	38715698	153129922	2140638	64	70002										
ZNF684	0	genome.wustl.edu	37	chr1	41012838	41012838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gaatgtgggaaaaccttcagGtatagttcatccctttataa	8	7	2	0			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	41012838	41012838	G	T	SNP	ZNF684	ENST00000372699	human	ensembl	69_37n	1	known	missense	c.843	p.R281S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF684	HGNC	ENSG00000117010	51	0	0	66	9	12	-	-	-	T	41012838	G	T	41012838	3	4	836	1	0	0	0	0	1	0	0	0	18187	1252	44	4	857	4	ZNF684	1	41012838	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		41012838	208237783	1	70003										
SLC16A4	0	genome.wustl.edu	37	chr1	110921957	110921957	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gcaccaaattcaatgcgataGctccaaataatataagggct	7	9	1	0			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	110921957	110921957	G	C	SNP	SLC16A4	ENST00000369779	human	ensembl	69_37n	-1	known	missense	c.548	p.A183G	0.541	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	72	0	0	71	9	11.25	-	-	-	C	110921957	G	C	110921957	3	2	836	1	0	0	0	0	1	0	0	0	14499	971	34	4	931	4	SLC16A4	1	110921957	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09	69909119	110921957	138328664	2	70004										
WNT2B	0	genome.wustl.edu	37	chr1	113059026	113059026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	catgaacttacataataaccGctgtggtcgcacggtcagta	9	10	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	113059026	113059026	G	A	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	1	known	missense	c.668	p.R223H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	61	0	0	76	14	15.56	-	-	-	A	113059026	G	A	113059026	3	1	836	1	0	0	0	0	1	0	0	0	17484	1087	38	1	811	1	WNT2B	1	113059026	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09	2137069	113059026	136191595	3	70005										
CAMK1G	0	genome.wustl.edu	37	chr1	209784824	209784824	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ccacaggattgacggaaacaCagccctccaccgggacatct	9	15	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	209784824	209784824	C	G	SNP	CAMK1G	ENST00000009105	human	ensembl	69_37n	1	known	missense	c.842	p.T281R	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	81	0	0	82	11	11.83	-	-	-	G	209784824	C	G	209784824	3	3	836	1	0	0	0	0	1	0	0	0	2623	478	17	4	876	4	CAMK1G	1	209784824	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09	96725798	209784824	39465797	4	70006										
SYT14	0	genome.wustl.edu	37	chr1	210273640	210273640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	aacatttaaatttaatcatgTtgaatctgagatgattggaa	7	3	2	3			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	210273640	210273640	T	C	SNP	SYT14	ENST00000422431	human	ensembl	69_37n	1	known	missense	c.1133	p.V378A	0.992	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT14	HGNC	ENSG00000143469	72	0	0	87	25	22.32	-	-	-	C	210273640	T	C	210273640	3	2	836	1	0	0	0	0	1	0	0	0	15562	1725	60	5	1159	5	SYT14	1	210273640	Missense_Mutation	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09	488816	210273640	38976981	5	70007										
NUP133	0	genome.wustl.edu	37	chr1	229633915	229633915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	actaggagataaaattccaaAaagagaagaaacttttcgac	7	6	0	3			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	1	229633915	229633915	A	G	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	missense	c.787	p.F263L	0.156	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	53	0	0	46	6	11.54	-	-	-	G	229633915	A	G	229633915	3	3	836	1	0	0	0	0	1	0	0	0	10827	14	1	5	2767	5	NUP133	1	229633915	Missense_Mutation	SNP	A	TCGA-E9-A1NE-01A-21D-A14K-09	19360275	229633915	19616706	6	70008										
MSTN	0	genome.wustl.edu	37	chr2	190924879	190924879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	caatgcctaagttggattcaGgttgtttgagccaattttgc	10	7	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	2	190924879	190924879	G	A	SNP	MSTN	ENST00000260950	human	ensembl	69_37n	-1	known	missense	c.656	p.P219L	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	MSTN	HGNC	ENSG00000138379	160	0	0	157	26	14.21	-	-	-	A	190924879	G	A	190924879	3	1	836	1	0	0	0	0	1	0	0	0	9965	1000	35	4	479	4	MSTN	2	190924879	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		190924879	52274494	7	70009										
STAP1	0	genome.wustl.edu	37	chr4	68424566	68424566	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ccaaaaccagcccctcgcagGatcttccaggaaaggttaaa	8	13	1	0			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	4	68424566	68424566	G	C	SNP	STAP1	ENST00000265404	human	ensembl	69_37n	1	known	missense	c.39	p.R13S	0.959	NULL	pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	STAP1	HGNC	ENSG00000035720	78	0	0	83	13	13.54	-	-	-	C	68424566	G	C	68424566	3	2	836	1	0	0	0	0	1	0	0	0	15343	1165	41	2	41	2	STAP1	4	68424566	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		68424566	122729710	8	70010										
DCHS2	0	genome.wustl.edu	37	chr4	155241643	155241643	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gcagttatgtggtggaccaaGgagcccactgtgacatcctc	12	11	0	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	4	155241643	155241643	G	C	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.3543	p.S1181	0.361	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	181	0	0	244	29	10.62	-	-	-	C	155241643	G	C	155241643	2	2	836	1	0	0	0	0	0	0	0	1	4319	987	35	4		4	DCHS2	4	155241643	Silent	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09	86817077	155241643	35912633	9	70011										
ATP10B	0	genome.wustl.edu	37	chr5	160034008	160034008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	tcttggaaggtaagcggaatCcaaagagcttgcggtctggc	14	8	2	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	5	160034008	160034008	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.2924	p.G975E	0.664	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	96	0	0	87	18	17.14	-	-	-	T	160034008	C	T	160034008	3	4	836	1	0	0	0	0	1	0	0	0	1121	855	30	2	1493	2	ATP10B	5	160034008	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09		160034008	20881252	10	70012										
ZNF354C	0	genome.wustl.edu	37	chr5	178505799	178505799	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	aaggatggtcactgggacatTaactttgaagaagctgtgga	13	5	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	5	178505799	178505799	T	G	SNP	ZNF354C	ENST00000315475	human	ensembl	69_37n	1	known	missense	c.366	p.I122M	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932	62	0	0	54	12	18.18	-	-	-	G	178505799	T	G	178505799	3	3	836	1	0	0	0	0	1	0	0	0	17962	1742	61	5	380	5	ZNF354C	5	178505799	Missense_Mutation	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09	18471791	178505799	2409461	11	70013										
SNX10	0	genome.wustl.edu	37	chr7	26412143	26412143	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gcttggacacagtagtgatgAcagcagttcacatggatgta	12	7	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	7	26412143	26412143	A	G	SNP	SNX10	ENST00000446848	human	ensembl	69_37n	1	known	missense	c.635	p.D212G	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX10	HGNC	ENSG00000086300	132	0	0	182	32	14.95	-	-	-	G	26412143	A	G	26412143	3	3	836	1	0	0	0	0	1	0	0	0	14970	275	10	5	579	5	SNX10	7	26412143	Missense_Mutation	SNP	A	TCGA-E9-A1NE-01A-21D-A14K-09		26412143	132726520	12	70014										
JHDM1D	0	genome.wustl.edu	37	chr7	139824558	139824558	+	Frame_Shift_Del	DEL	T	T	-													0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ccaaattttcatctgttggcTttattaaataaaaaatcttc							TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	7	139824558	139824558	T	-	DEL	JHDM1D	ENST00000397560	human	ensembl	69_37n	-1	known	frame_shift_del	c.914	p.K305fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459	86	0	0	107	15	12.3	-	-	-	-	139824558	T	-	139824558	7	5	836	1	0	1	0	1	0	0	0	0	8002	1609	56	0	1967	0	JHDM1D	7	139824558	Frame_Shift_Del	DEL	T	TCGA-E9-A1NE-01A-21D-A14K-09	113412415	139824558	19314105	13	70015										
TLE1	0	genome.wustl.edu	37	chr9	84202727	84202727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	aatacagctggctccgtctgTgtggccctggaattgcctga	12	11	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	9	84202727	84202727	T	C	SNP	TLE1	ENST00000376499	human	ensembl	69_37n	-1	known	missense	c.1846	p.T616A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781	95	0	0	108	18	14.17	-	-	-	C	84202727	T	C	84202727	3	2	836	1	0	0	0	0	1	0	0	0	16033	1696	59	5	482	5	TLE1	9	84202727	Missense_Mutation	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09		84202727	57010704	14	70016										
CELF2	0	genome.wustl.edu	37	chr10	11330504	11330504	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gagcagcgccctgggagcccTcacgagtcccggtgagtgtg	16	13	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	10	11330504	11330504	T	A	SNP	CELF2	ENST00000450189	human	ensembl	69_37n	1	known	missense	c.965	p.L322H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	47	0	0	60	18	23.08	-	-	-	A	11330504	T	A	11330504	3	1	836	1	0	0	0	0	1	0	0	0	3245	1551	54	5	1056	5	CELF2	10	11330504	Missense_Mutation	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09		11330504	124204243	15	70017										
UPF2	0	genome.wustl.edu	37	chr10	12077114	12077114	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ttggcctgctcttcttgcttCtttctctcttcctcttgatg	6	13	6	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	10	12077114	12077114	C	A	SNP	UPF2	ENST00000356352	human	ensembl	69_37n	-1	known	missense	c.309	p.K103N	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	443	0	0	549	134	19.56	-	-	-	A	12077114	C	A	12077114	3	1	836	1	0	0	0	0	1	0	0	0	17101	912	32	2	3593	2	UPF2	10	12077114	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09	746610	12077114	123457633	16	70018										
NAP1L4	0	genome.wustl.edu	37	chr11	2975878	2975878	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	tgaattcagaatcttcatccTgaggaggaaaaacctacgtg	9	8	3	3			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	11	2975878	2975878	T	A	SNP	NAP1L4	ENST00000380542	human	ensembl	69_37n	-1	known	splice_site	c.916-2	e11-2	1.000	-	-	-	no_errors	NAP1L4	HGNC	ENSG00000205531	65	0	0	62	16	20.51	-	-	-	A	2975878	T	A	2975878	5	1	836	1	0	0	0	0	0	0	1	0	10231	1594	55	5	229	5	NAP1L4	11	2975878	Splice_Site	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09		2975878	132030638	17	70019										
ATG2A	0	genome.wustl.edu	37	chr11	64674264	64674264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	accagctccccgtgcacagcCtccagccgcttcccaccctc	6	23	0	0			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	11	64674264	64674264	C	T	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.2260	p.G754S	0.802	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	47	0	0	57	7	10.94	-	-	-	T	64674264	C	T	64674264	3	4	836	1	0	0	0	0	1	0	0	0	1097	680	24	4	3048	4	ATG2A	11	64674264	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09	61698386	64674264	70332252	18	70020										
ATG2A	0	genome.wustl.edu	37	chr11	64674996	64674996	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	cagcgttagcacctctcataCccagcttgaaggctgacttg	9	13	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	11	64674996	64674996	C	G	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	splice_site	c.2647+1	e18+1	1.000	-	-	-	no_errors	ATG2A	HGNC	ENSG00000110046	49	0	0	46	9	16.36	-	-	-	G	64674996	C	G	64674996	5	3	836	1	0	0	0	0	0	0	1	0	1097	521	18	4	3264	4	ATG2A	11	64674996	Splice_Site	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09	732	64674996	70331520	19	70021										
KCNA5	0	genome.wustl.edu	37	chr12	5155008	5155008	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	agcaggggatccttctgcaaGgctggggggaccctggagaa	17	9	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	12	5155008	5155008	G	C	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	1	known	missense	c.1695	p.K565N	0.016	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	40	0	0	38	9	19.15	-	-	-	C	5155008	G	C	5155008	3	2	836	1	0	0	0	0	1	0	0	0	8060	991	35	4	1697	4	KCNA5	12	5155008	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		5155008	128696887	20	70022										
DACT1	0	genome.wustl.edu	37	chr14	59112414	59112414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ccctgtaaggaccaacaaacCaagaaccagcgtgaacgctg	9	13	0	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	14	59112414	59112414	C	T	SNP	DACT1	ENST00000335867	human	ensembl	69_37n	1	known	missense	c.1073	p.P358L	0.991	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617	44	0	0	66	9	12	-	-	-	T	59112414	C	T	59112414	3	4	836	1	0	0	0	0	1	0	0	0	4254	594	21	4	1087	4	DACT1	14	59112414	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09		59112414	48237126	21	70023										
DUOXA2	0	genome.wustl.edu	37	chr15	45406842	45406842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gtactgcctttttacccccaGccccggcatgccgcaggctt	9	17	0	0			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	15	45406842	45406842	G	A	SNP	DUOXA2	ENST00000323030	human	ensembl	69_37n	1	known	silent	c.39	p.Q13	0.004	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA2	HGNC	ENSG00000140274	112	0	0	132	23	14.74	-	-	-	A	45406842	G	A	45406842	2	1	836	1	0	0	0	0	0	0	0	1	4838	962	34	4		4	DUOXA2	15	45406842	Silent	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		45406842	57124550	22	70024										
KIF7	0	genome.wustl.edu	37	chr15	90173555	90173555	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	agaggagggctctggtctctGaggatgagaggtagctgagc	18	6	2	4			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	15	90173555	90173555	G	A	SNP	KIF7	ENST00000394412	human	ensembl	69_37n	-1	known	missense	c.3281	p.S1094L	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	61	0	0	53	7	11.67	-	-	-	A	90173555	G	A	90173555	3	1	836	1	0	0	0	0	1	0	0	0	8361	1294	45	2	766	2	KIF7	15	90173555	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09	44766713	90173555	12357837	23	70025										
CLEC10A	0	genome.wustl.edu	37	chr17	6980307	6980307	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gtccctctgaaatttggaatCtaaacaggtggatgggaagg	13	6	2	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	17	6980307	6980307	C	A	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	splice_site	c.185-1	e3-1	0.402	-	-	-	no_errors	CLEC10A	HGNC	ENSG00000132514	67	0	0	91	13	12.5	-	-	-	A	6980307	C	A	6980307	5	1	836	1	0	0	0	0	0	0	1	0	3525	927	32	2	799	2	CLEC10A	17	6980307	Splice_Site	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09		6980307	74214903	24	70026										
KIAA1468	0	genome.wustl.edu	37	chr18	59888293	59888293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	tggagtttgaactacggaaaGccaaggagaccattcaggcc	12	9	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	18	59888293	59888293	G	T	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	missense	c.640	p.A214S	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	144	0	0	127	22	14.77	-	-	-	T	59888293	G	T	59888293	3	4	836	1	0	0	0	0	1	0	0	0	8288	971	34	4	650	4	KIAA1468	18	59888293	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		59888293	18188955	25	70027										
PTPRH	0	genome.wustl.edu	37	chr19	55708703	55708703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	atacgtacaactgagagtggGggtctccaggggccttccac	13	11	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	19	55708703	55708703	G	C	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	missense	c.1772	p.P591R	0.274	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	67	0	0	71	16	18.39	-	-	-	C	55708703	G	C	55708703	3	2	836	1	0	0	0	0	1	0	0	0	12886	1232	43	4	1623	4	PTPRH	19	55708703	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09		55708703	3420280	26	70028										
KCNB1	0	genome.wustl.edu	37	chr20	48098719	48098719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	tcatgtgcagtcgcccagtgCggtagaagttgaggatggag	16	7	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	20	48098719	48098719	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	69_37n	-1	known	missense	c.299	p.R100H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	37	0	0	53	14	20.59	-	-	-	T	48098719	C	T	48098719	3	4	836	1	0	0	0	0	1	0	0	0	8066	768	27	1	2285	1	KCNB1	20	48098719	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09		48098719	14926801	27	70029										
YPEL1	0	genome.wustl.edu	37	chr22	22064966	22064966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	ggtgtgctctgcagtggataCagctgtacgttcggtgacag	15	8	1	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	22	22064966	22064966	C	T	SNP	YPEL1	ENST00000339468	human	ensembl	69_37n	-1	known	missense	c.68	p.C23Y	1.000	pfam_Yippee	pfam_Yippee	-	no_errors	YPEL1	HGNC	ENSG00000100027	300	0	0	387	53	11.75	-	-	-	T	22064966	C	T	22064966	3	4	836	1	0	0	0	0	1	0	0	0	17586	478	17	4	307	4	YPEL1	22	22064966	Missense_Mutation	SNP	C	TCGA-E9-A1NE-01A-21D-A14K-09		22064966	29239600	28	70030										
EFCAB6	0	genome.wustl.edu	37	chr22	44079628	44079628	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	aaggctttcaaaatcttacaGtgttgattatcagtaatgct	7	6	3	1			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	22	44079628	44079628	G	C	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	missense	c.1250	p.T417S	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	264	0	0	279	35	11.15	-	-	-	C	44079628	G	C	44079628	3	2	836	1	0	0	0	0	1	0	0	0	4974	1043	36	4	3339	4	EFCAB6	22	44079628	Missense_Mutation	SNP	G	TCGA-E9-A1NE-01A-21D-A14K-09	22014662	44079628	7224938	29	70031										
TRPC5	0	genome.wustl.edu	37	chrX	111024400	111024400	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	1	1	0.447209653092006	0	0.844729344729345	1	1	0	gaggaagctttacctgataaTgttgattttgtatcaggctg	11	5	1	2			TCGA-E9-A1NE-01A-21D-A14K-09	TCGA-E9-A1NE-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbd34322-ac40-41f0-acc7-7bfd06afdf67	992642bc-6b17-456e-acf5-e2ec2a1f2a08	X	111024400	111024400	T	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.2135	p.H712L	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	216	0	0	283	32	10.16	-	-	-	A	111024400	T	A	111024400	3	1	836	1	0	0	0	0	1	0	0	0	16678	1464	51	5	798	5	TRPC5	23	111024400	Missense_Mutation	SNP	T	TCGA-E9-A1NE-01A-21D-A14K-09		111024400	44246160	30	70032										
ARHGEF10L	0	genome.wustl.edu	37	chr1	17975064	17975064	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tgtaggggaggagaaccagcCaggctggctatgcccggatg	17	9	0	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	17975064	17975064	C	G	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	1	known	missense	c.2288	p.P763R	0.998	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	87	0	0	40	7	14.89	-	-	-	G	17975064	C	G	17975064	3	3	837	1	0	0	0	0	1	0	0	0	897	594	21	4	2370	4	ARHGEF10L	1	17975064	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09		17975064	231275557	1	70033										
EFCAB7	0	genome.wustl.edu	37	chr1	63999242	63999242	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	accacatcgaagggtcccctGaaagggacccatcaccagta	9	14	1	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	63999242	63999242	G	A	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	missense	c.604	p.E202K	0.998	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	63	0	0	28	22	44	-	-	-	A	63999242	G	A	63999242	3	1	837	1	0	0	0	0	1	0	0	0	4975	1291	45	2	618	2	EFCAB7	1	63999242	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	46024178	63999242	185251379	2	70034										
EFCAB7	0	genome.wustl.edu	37	chr1	64011686	64011686	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	aaatagctcagaggtccatgGtttatctaacaattaagcca	7	8	2	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	64011686	64011686	G	C	SNP	EFCAB7	ENST00000371088	human	ensembl	69_37n	1	known	missense	c.904	p.V302L	0.997	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB7	HGNC	ENSG00000203965	77	0	0	77	13	14.44	-	-	-	C	64011686	G	C	64011686	3	2	837	1	0	0	0	0	1	0	0	0	4975	1261	44	4	926	4	EFCAB7	1	64011686	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	12444	64011686	185238935	3	70035										
GPATCH4	0	genome.wustl.edu	37	chr1	156568029	156568030	+	In_Frame_Ins	INS	-	-	CCA													0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	agctcatacctgcccagtttINSccactaccaagttggccgca							TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	156568029	156568030	-	CCA	INS	GPATCH4	ENST00000438976	human	ensembl	69_37n	-1	known	in_frame_ins	c.251_250	p.84in_frame_insV	0.994:0.999	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818	183	0	0	118	24	16.9	-	-	-	CCA	156568030	-	CCA	156568029	7	5	837	1	0	1	1	0	0	0	0	0	6643	1783	62	0	896	0	GPATCH4	1	156568029	In_Frame_Ins	INS	-	TCGA-E9-A1NF-01A-11D-A14G-09	92556343	156568029	92682592	4	70036										
CD1B	0	genome.wustl.edu	37	chr1	158298045	158298045	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ctcatgggatattctgatatGacctgttaaaaacagaagaa	8	6	2	4			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	158298045	158298045	G	A	SNP	CD1B	ENST00000368168	human	ensembl	69_37n	-1	known	missense	c.983	p.S328L	0.062	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1B	HGNC	ENSG00000158485	196	0	0	127	32	20.13	-	-	-	A	158298045	G	A	158298045	3	1	837	1	0	0	0	0	1	0	0	0	3004	1294	45	2	22	2	CD1B	1	158298045	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	1730016	158298045	90952576	5	70037										
ATP1B1	0	genome.wustl.edu	37	chr1	169094132	169094132	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	cctggtctaggattaacacaGattcctcagatccagaagac	8	11	2	4			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	169094132	169094132	G	T	SNP	ATP1B1	ENST00000367815	human	ensembl	69_37n	1	known	missense	c.237	p.Q79H	0.334	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	86	0	0	70	8	10.26	-	-	-	T	169094132	G	T	169094132	3	4	837	1	0	0	0	0	1	0	0	0	1136	933	33	2	247	2	ATP1B1	1	169094132	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	10796087	169094132	80156489	6	70038										
NUP133	0	genome.wustl.edu	37	chr1	229622242	229622242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tagaaaaaatgataggaacaCcaccacaggcaccagcacct	7	12	0	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	229622242	229622242	C	G	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	missense	c.1376	p.G459A	0.948	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	99	0	0	29	28	49.12	-	-	-	G	229622242	C	G	229622242	3	3	837	1	0	0	0	0	1	0	0	0	10827	507	18	4	2158	4	NUP133	1	229622242	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	60528110	229622242	19628379	7	70039										
FMN2	0	genome.wustl.edu	37	chr1	240370352	240370352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ggcgaaatcgatacagacttCccccacggaagagggcgggg	15	11	0	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	240370352	240370352	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.2240	p.S747F	0.999	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	47	0	0	22	17	43.59	-	-	-	T	240370352	C	T	240370352	3	4	837	1	0	0	0	0	1	0	0	0	5996	855	30	2	2258	2	FMN2	1	240370352	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	10748110	240370352	8880269	8	70040										
FMN2	0	genome.wustl.edu	37	chr1	240370552	240370552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tctcacagcctccaccacctCcatcccttctgtggtctgct	5	19	3	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	240370552	240370552	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.2440	p.P814S	0.626	smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	55	0	0	23	17	42.5	-	-	-	T	240370552	C	T	240370552	3	4	837	1	0	0	0	0	1	0	0	0	5996	855	30	2	2458	2	FMN2	1	240370552	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	200	240370552	8880069	9	70041										
SPRED2	0	genome.wustl.edu	37	chr2	65571979	65571979	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tgtgggaaccatcccccgctGgagtcatctctggtcataac	10	13	3	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	65571979	65571979	G	T	SNP	SPRED2	ENST00000356388	human	ensembl	69_37n	-1	known	silent	c.78	p.S26	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369	47	0	0	41	6	12.77	-	-	-	T	65571979	G	T	65571979	2	4	837	1	0	0	0	0	0	0	0	1	15184	1335	47	4		4	SPRED2	2	65571979	Silent	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09		65571979	177627394	10	70042										
RANBP2	0	genome.wustl.edu	37	chr2	109347330	109347330	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	aaaacacagacaaagccgttGaatgttacagggtaagttac	9	7	0	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	109347330	109347330	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	178	0	0	126	52	29.21	-	-	-	A	109347330	G	A	109347330	3	1	837	1	0	0	0	0	1	0	0	0	13111	1291	45	2	251	2	RANBP2	2	109347330	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	43775351	109347330	133852043	11	70043										
EPB41L5	0	genome.wustl.edu	37	chr2	120903830	120903830	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gaagatagcttattaagtcaTaaaaatgccaatgttcagga	8	5	2	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	120903830	120903830	T	C	SNP	EPB41L5	ENST00000263713	human	ensembl	69_37n	1	known	silent	c.1758	p.H586	1.000	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L5	HGNC	ENSG00000115109	71	0	0	45	16	26.23	-	-	-	C	120903830	T	C	120903830	2	2	837	1	0	0	0	0	0	0	0	1	5194	1403	49	5		5	EPB41L5	2	120903830	Silent	SNP	T	TCGA-E9-A1NF-01A-11D-A14G-09	11556500	120903830	122295543	12	70044										
FASTKD2	0	genome.wustl.edu	37	chr2	207638973	207638973	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tttttatcctcattttatttGaaaaccttggctttcgacct	4	9	1	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	207638973	207638973	G	A	SNP	FASTKD2	ENST00000236980	human	ensembl	69_37n	1	known	missense	c.1279	p.E427K	1.000	NULL	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246	148	1	0.67	46	92	66.19	-	-	-	A	207638973	G	A	207638973	3	1	837	1	0	0	0	0	1	0	0	0	5732	1291	45	2	1301	2	FASTKD2	2	207638973	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	86735143	207638973	35560400	13	70045										
SLCO2A1	0	genome.wustl.edu	37	chr3	133664056	133664056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	aagatagaatctgggcacgaGcagtccctgcggcaggcagg	15	10	1	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	133664056	133664056	G	A	SNP	SLCO2A1	ENST00000481359	human	ensembl	69_37n	-1	known	missense	c.1154	p.A385V	1.000	NULL	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	75	0	0	36	21	36.21	-	-	-	A	133664056	G	A	133664056	3	1	837	1	0	0	0	0	1	0	0	0	14815	963	34	4	607	4	SLCO2A1	3	133664056	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09		133664056	64358374	14	70046										
MASP1	0	genome.wustl.edu	37	chr3	186970996	186970996	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ctccagccccggttctctccCgagttgtcactatggaacag	9	15	2	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	186970996	186970996	C	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	silent	c.852	p.S284	0.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	82	0	0	77	16	17.2	-	-	-	T	186970996	C	T	186970996	2	4	837	1	0	0	0	0	0	0	0	1	9393	639	23	1		1	MASP1	3	186970996	Silent	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	53306940	186970996	11051434	15	70047										
WDR17	0	genome.wustl.edu	37	chr4	177050008	177050008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ttaattctcctccaagaaaaAagtgtaagtaaaaatgttat	5	5	1	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	4	177050008	177050008	A	G	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.982	p.K328E	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	50	0	0	44	7	13.73	-	-	-	G	177050008	A	G	177050008	3	3	837	1	0	0	0	0	1	0	0	0	17374	15	1	5	1004	5	WDR17	4	177050008	Missense_Mutation	SNP	A	TCGA-E9-A1NF-01A-11D-A14G-09		177050008	14104268	16	70048										
GCNT4	0	genome.wustl.edu	37	chr5	74325091	74325091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tctttccaatttactgtttgGgggtttcaccgtctccaaca	7	11	3	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	5	74325091	74325091	G	A	SNP	GCNT4	ENST00000322348	human	ensembl	69_37n	-1	known	missense	c.772	p.P258S	0.877	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928	60	0	0	45	7	13.46	-	-	-	A	74325091	G	A	74325091	3	1	837	1	0	0	0	0	1	0	0	0	6353	1232	43	4	593	4	GCNT4	5	74325091	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09		74325091	106590169	17	70049										
VCAN	0	genome.wustl.edu	37	chr5	82834037	82834037	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	caggtacggcttctacatttGaggtatattcatctacacag	8	9	3	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	5	82834037	82834037	G	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	nonsense	c.5215	p.E1739*	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	49	0	0	21	11	34.38	-	-	-	T	82834037	G	T	82834037	4	4	837	1	0	0	0	0	0	1	0	0	17235	1291	45	2	5241	2	VCAN	5	82834037	Nonsense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	8508946	82834037	98081223	18	70050										
PLA2G7	0	genome.wustl.edu	37	chr6	46672386	46672386	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ccctggaataagattctcatCatctccttcaatcaagcagt	5	12	5	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	46672386	46672386	C	T	SNP	PLA2G7	ENST00000274793	human	ensembl	69_37n	-1	known	missense	c.1237	p.D413N	0.670	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	-	no_errors	PLA2G7	HGNC	ENSG00000146070	130	0	0	106	33	23.74	-	-	-	T	46672386	C	T	46672386	3	4	837	1	0	0	0	0	1	0	0	0	12083	826	29	2	92	2	PLA2G7	6	46672386	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09		46672386	124442681	19	70051										
PLA2G7	0	genome.wustl.edu	37	chr6	46678354	46678354	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ccatgatcaatgtcaagaatCagactgagagcttgggaaca	10	8	3	4			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	46678354	46678354	C	T	SNP	PLA2G7	ENST00000274793	human	ensembl	69_37n	-1	known	silent	c.705	p.L235	0.135	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	pfam_PAF_acetylhydro,pirsf_Ac_Ohase_PAF	-	no_errors	PLA2G7	HGNC	ENSG00000146070	98	0	0	53	30	36.14	-	-	-	T	46678354	C	T	46678354	2	4	837	1	0	0	0	0	0	0	0	1	12083	813	29	2		2	PLA2G7	6	46678354	Silent	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	5968	46678354	124436713	20	70052										
ATG5	0	genome.wustl.edu	37	chr6	106649944	106649944	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ggacgaaacagcttctgaatGaaaggtctttcagtcgttgt	11	7	3	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	106649944	106649944	G	A	SNP	ATG5	ENST00000360666	human	ensembl	69_37n	-1	known	missense	c.224	p.S75L	1.000	NULL	NULL	-	no_errors	ATG5	HGNC	ENSG00000057663	83	0	0	80	9	10.11	-	-	-	A	106649944	G	A	106649944	3	1	837	1	0	0	0	0	1	0	0	0	1104	1281	45	2	241	2	ATG5	6	106649944	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	59971590	106649944	64465123	21	70053										
RAB19	0	genome.wustl.edu	37	chr7	140107556	140107556	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gacgtgtgtggtgcagcattTcaagtctggagtctacactg	13	8	3	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	7	140107556	140107556	T	G	SNP	RAB19	ENST00000275874	human	ensembl	69_37n	1	known	missense	c.110	p.F37C	1.000	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB19	HGNC	ENSG00000146955	110	0	0	84	18	17.65	-	-	-	G	140107556	T	G	140107556	3	3	837	1	0	0	0	0	1	0	0	0	12987	1783	62	5	112	5	RAB19	7	140107556	Missense_Mutation	SNP	T	TCGA-E9-A1NF-01A-11D-A14G-09		140107556	19031107	22	70054										
HPSE2	0	genome.wustl.edu	37	chr10	100219345	100219346	+	Frame_Shift_Ins	INS	-	-	G													0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	atagcttatcggtagcggcaINSggccaaagcattgacattct							TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	10	100219345	100219346	-	G	INS	HPSE2	ENST00000370552	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1765_1764	p.C588fs	1.000:1.000	NULL	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	30	0	0	9	2	18.18	-	-	-	G	100219346	-	G	100219345	7	5	837	1	0	1	1	0	0	0	0	0	7396	188	7	0	17	0	HPSE2	10	100219345	Frame_Shift_Ins	INS	-	TCGA-E9-A1NF-01A-11D-A14G-09		100219345	35315402	23	70055										
RECQL	0	genome.wustl.edu	37	chr12	21630747	21630747	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	aattacatacctcataatatAgatttggcctattaaaagaa	4	6	1	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	12	21630747	21630747	A	T	SNP	RECQL	ENST00000421138	human	ensembl	69_37n	-1	known	missense	c.857	p.L286Q	1.000	smart_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	66	0	0	34	37	52.11	-	-	-	T	21630747	A	T	21630747	3	4	837	1	0	0	0	0	1	0	0	0	13284	420	15	5	1128	5	RECQL	12	21630747	Missense_Mutation	SNP	A	TCGA-E9-A1NF-01A-11D-A14G-09		21630747	112221148	24	70056										
LIG4	0	genome.wustl.edu	37	chr13	108862458	108862458	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	aaaaatactactaagaatctCatacctctttctcagagtct	3	10	4	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	13	108862458	108862458	C	T	SNP	LIG4	ENST00000356922	human	ensembl	69_37n	-1	known	missense	c.1159	p.E387K	1.000	pfam_DNA_ligase_ATP-dep_cent,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold-like,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405	85	0	0	84	17	16.83	-	-	-	T	108862458	C	T	108862458	3	4	837	1	0	0	0	0	1	0	0	0	8838	835	29	2	1580	2	LIG4	13	108862458	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09		108862458	6307420	25	70057										
NUMB	0	genome.wustl.edu	37	chr14	73753872	73753872	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ctctctttctgcttgttcagTggctgttgtgacacggaatg	11	9	3	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	14	73753872	73753872	T	A	SNP	NUMB	ENST00000355058	human	ensembl	69_37n	-1	known	missense	c.601	p.T201S	1.000	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMB	HGNC	ENSG00000133961	200	0	0	105	59	35.98	-	-	-	A	73753872	T	A	73753872	3	1	837	1	0	0	0	0	1	0	0	0	10824	1696	59	5	1374	5	NUMB	14	73753872	Missense_Mutation	SNP	T	TCGA-E9-A1NF-01A-11D-A14G-09		73753872	33595668	26	70058										
VPS13C	0	genome.wustl.edu	37	chr15	62277090	62277090	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tcctggtcgctgagatacttGagtgcccaggccaattatct	10	11	1	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	15	62277090	62277090	G	C	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.1687	p.Q563E	0.354	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	109	0	0	83	15	15.31	-	-	-	C	62277090	G	C	62277090	3	2	837	1	0	0	0	0	1	0	0	0	17288	1299	45	2	9870	2	VPS13C	15	62277090	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09		62277090	40254302	27	70059										
TSPAN3	0	genome.wustl.edu	37	chr15	77346562	77346562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gcccggctagcagcatcaggGttggttccattgtaggtctt	13	10	2	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	15	77346562	77346562	G	T	SNP	TSPAN3	ENST00000267970	human	ensembl	69_37n	-1	known	missense	c.390	p.N130K	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN3	HGNC	ENSG00000140391	147	0	0	49	48	48.98	-	-	-	T	77346562	G	T	77346562	3	4	837	1	0	0	0	0	1	0	0	0	16741	1252	44	4	387	4	TSPAN3	15	77346562	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	15069472	77346562	25184830	28	70060										
SALL1	0	genome.wustl.edu	37	chr16	51174727	51174727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gcctctctccggtatgggaaCgcaagtggatctgcaaggca	13	11	2	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	16	51174727	51174727	C	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.1406	p.R469H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	61	0	0	23	8	25.81	-	-	-	T	51174727	C	T	51174727	3	4	837	1	0	0	0	0	1	0	0	0	13896	536	19	1	2576	1	SALL1	16	51174727	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09		51174727	39180026	29	70061										
TP53	0	genome.wustl.edu	37	chr17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tggctgtcccagaatgcaagAagcccagacggaaaccgtag	12	11	0	3			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	17	7579349	7579349	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.338	p.F113C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	38	0	0	13	8	38.1	-	-	-	C	7579349	A	C	7579349	3	2	837	1	0	0	0	0	1	0	0	0	16477	246	9	5	964	5	TP53	17	7579349	Missense_Mutation	SNP	A	TCGA-E9-A1NF-01A-11D-A14G-09		7579349	73615861	30	70062										
NCOR1	0	genome.wustl.edu	37	chr17	16029456	16029457	+	Frame_Shift_Ins	INS	-	-	T													0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ttcttcttcttttttttctgINSttttttctgctttatcctct							TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	17	16029456	16029457	-	T	INS	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1574_1573	p.T525fs	1.000:1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	103	0	0	44	28	38.89	-	-	-	T	16029457	-	T	16029456	7	5	837	1	0	1	1	0	0	0	0	0	10307	1377	48	0	5876	0	NCOR1	17	16029456	Frame_Shift_Ins	INS	-	TCGA-E9-A1NF-01A-11D-A14G-09	8450107	16029456	65165754	31	70063										
TMPRSS9	0	genome.wustl.edu	37	chr19	2416579	2416579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	cccacctgggcactgcgtccCtcctgggcctgggcgggagc	15	17	0	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	2416579	2416579	C	T	SNP	TMPRSS9	ENST00000332578	human	ensembl	69_37n	1	known	missense	c.1687	p.L563F	0.452	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	28	0	0	18	11	37.93	-	-	-	T	2416579	C	T	2416579	3	4	837	1	0	0	0	0	1	0	0	0	16348	681	24	4	1729	4	TMPRSS9	19	2416579	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09		2416579	56712404	32	70064										
COL5A3	0	genome.wustl.edu	37	chr19	10097049	10097049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	cctgccccgcctgccccttcGgcccctcaggaccatcctct	7	23	2	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	10097049	10097049	G	A	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.2294	p.P765L	0.074	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	30	0	0	11	13	54.17	-	-	-	A	10097049	G	A	10097049	3	1	837	1	0	0	0	0	1	0	0	0	3728	1116	39	1	3095	1	COL5A3	19	10097049	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	7680470	10097049	49031934	33	70065										
CALR3	0	genome.wustl.edu	37	chr19	16606648	16606648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	cattggtggactgcaaccatCggtttctccaatgctctgtg	10	11	2	0			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	16606648	16606648	C	T	SNP	CALR3	ENST00000269881	human	ensembl	69_37n	-1	known	missense	c.107	p.R36Q	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,pirsf_Calreticulin	pfam_Calret/calnex,superfamily_ConA-like_lec_gl,superfamily_Calreticulin/calnexin_P,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000141979	77	0	0	59	14	18.92	-	-	-	T	16606648	C	T	16606648	3	4	837	1	0	0	0	0	1	0	0	0	2618	884	31	1	1079	1	CALR3	19	16606648	Missense_Mutation	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	6509599	16606648	42522335	34	70066										
ARHGAP35	0	genome.wustl.edu	37	chr19	47503802	47503802	+	Frame_Shift_Del	DEL	T	T	-													0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gcgccaggcccagctcccccTctgccgtggcttccaccgtc							TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	47503802	47503802	T	-	DEL	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	frame_shift_del	c.4357	p.S1453fs	0.950	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	55	0	0	25	7	21.21	-	-	-	-	47503802	T	-	47503802	7	5	837	1	0	1	0	1	0	0	0	0	6846	1551	54	0	4379	0	ARHGAP35	19	47503802	Frame_Shift_Del	DEL	T	TCGA-E9-A1NF-01A-11D-A14G-09	30897154	47503802	11625181	35	70067										
TMEM143	0	genome.wustl.edu	37	chr19	48836505	48836505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	gttactgctgggcgtggcttGcgggggctcggaagtgatcg	19	8	0	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	48836505	48836505	G	T	SNP	TMEM143	ENST00000293261	human	ensembl	69_37n	-1	known	missense	c.1351	p.Q451K	0.193	NULL	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558	43	0	0	14	5	26.32	-	-	-	T	48836505	G	T	48836505	3	4	837	1	0	0	0	0	1	0	0	0	16152	1328	46	4	32	4	TMEM143	19	48836505	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	1332703	48836505	10292478	36	70068										
MED25	0	genome.wustl.edu	37	chr19	50335258	50335258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	tcactgccctgccaggtctaCgtgaatcatggcgagaacct	10	13	3	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	50335258	50335258	C	T	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	silent	c.1296	p.Y432	0.703	pfam_Mediator_Med25	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	110	0	0	68	8	10.53	-	-	-	T	50335258	C	T	50335258	2	4	837	1	0	0	0	0	0	0	0	1	9514	547	19	1		1	MED25	19	50335258	Silent	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	1498753	50335258	8793725	37	70069										
STK35	0	genome.wustl.edu	37	chr20	2097463	2097463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ctacagctgacgagcgccatTgccttcctgcacaaaaacca	7	15	0	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	2097463	2097463	T	C	SNP	STK35	ENST00000381482	human	ensembl	69_37n	1	known	silent	c.1044	p.I348	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK35	HGNC	ENSG00000125834	100	0	0	44	29	39.73	-	-	-	C	2097463	T	C	2097463	2	2	837	1	0	0	0	0	0	0	0	1	15392	1800	63	5		5	STK35	20	2097463	Silent	SNP	T	TCGA-E9-A1NF-01A-11D-A14G-09		2097463	60928057	38	70070										
NCOA6	0	genome.wustl.edu	37	chr20	33370003	33370003	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	ttatcatctatatttcctttGaaggccacaaaaattgtgga	6	7	2	1			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	33370003	33370003	G	C	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	missense	c.156	p.F52L	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	69	0	0	65	34	34.34	-	-	-	C	33370003	G	C	33370003	3	2	837	1	0	0	0	0	1	0	0	0	10305	1281	45	2	6087	2	NCOA6	20	33370003	Missense_Mutation	SNP	G	TCGA-E9-A1NF-01A-11D-A14G-09	31272540	33370003	29655517	39	70071										
C20orf111	0	genome.wustl.edu	37	chr20	42831600	42831600	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.25	10	0.00972142535577545	2.78726708074534	2.56428571428571	2.84920634920635	0.0360748418360478	0.289190125538154	6	atctcaataagaagctcttaCccgtgccaactgtctttaga	6	11	3	2			TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	42831600	42831600	C	A	SNP	C20orf111	ENST00000255174	human	ensembl	69_37n	-1	known	splice_site	c.191+1	e2+1	1.000	-	-	-	no_errors	C20orf111	HGNC	ENSG00000132823	125	0	0	104	29	21.8	-	-	-	A	42831600	C	A	42831600	5	1	837	1	0	0	0	0	0	0	1	0	2100	521	18	4	694	4	C20orf111	20	42831600	Splice_Site	SNP	C	TCGA-E9-A1NF-01A-11D-A14G-09	9461597	42831600	20193920	40	70072										
USP24	0	genome.wustl.edu	37	chr1	55637338	55637338	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	ttttaaaatggtattcattaTcaggattgaaagcctagatt	7	4	2	2			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	55637338	55637338	T	C	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.716	p.D239G	1.000	NULL	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	47	0	0	61	11	15.28	-	-	-	C	55637338	T	C	55637338	3	2	838	1	0	0	0	0	1	0	0	0	17152	1435	50	5	7402	5	USP24	1	55637338	Missense_Mutation	SNP	T	TCGA-E9-A1NG-01A-21D-A14K-09		55637338	193613283	1	70073										
CLCA1	0	genome.wustl.edu	37	chr1	86942163	86942163	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	tccatgagtgggctcatctaCgatggggagtatttgacgag	14	7	2	2			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	86942163	86942163	C	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	nonsense	c.484	p.R162*	0.664	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	92	0	0	108	22	16.92	-	-	-	T	86942163	C	T	86942163	4	4	838	1	0	0	0	0	0	1	0	0	3487	528	19	1	498	1	CLCA1	1	86942163	Nonsense_Mutation	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09	31304825	86942163	162308458	2	70074										
SLC44A3	0	genome.wustl.edu	37	chr1	95311008	95311008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	gggtggctgtgctgctgagcCtgggaactgcaggtaaggga	19	7	0	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	95311008	95311008	C	T	SNP	SLC44A3	ENST00000271227	human	ensembl	69_37n	1	known	silent	c.1060	p.L354	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036	59	0	0	98	24	19.51	-	-	-	T	95311008	C	T	95311008	2	4	838	1	0	0	0	0	0	0	0	1	14726	680	24	4		4	SLC44A3	1	95311008	Silent	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09	8368845	95311008	153939613	3	70075										
SPTA1	0	genome.wustl.edu	37	chr1	158584095	158584095	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	ttcactcacacctttgatgtCcctgaaagaaaaaaaaaaaa	4	9	2	3			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	158584095	158584095	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6790	p.D2264Y	0.995	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	43	0	0	46	9	16.36	-	-	-	A	158584095	C	A	158584095	3	1	838	1	0	0	0	0	1	0	0	0	15207	869	30	2	485	2	SPTA1	1	158584095	Missense_Mutation	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09	63273087	158584095	90666526	4	70076										
CSRNP3	0	genome.wustl.edu	37	chr2	166535936	166535936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	accatgaccccggagcaattCgttgactatgcccgacaagc	9	14	0	2			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	2	166535936	166535936	C	A	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	1	known	missense	c.1431	p.F477L	0.620	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	33	0	0	41	7	14.58	-	-	-	A	166535936	C	A	166535936	3	1	838	1	0	0	0	0	1	0	0	0	3997	883	31	3	1445	3	CSRNP3	2	166535936	Missense_Mutation	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09		166535936	76663437	5	70077										
CCDC80	0	genome.wustl.edu	37	chr3	112358410	112358410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	ctcatctctgatcatctcacGcggagagcccctggctgctg	10	15	4	2			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	3	112358410	112358410	G	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.343	p.R115C	0.003	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	42	0	0	42	6	12.5	-	-	-	A	112358410	G	A	112358410	3	1	838	1	0	0	0	0	1	0	0	0	2881	1087	38	1	2537	1	CCDC80	3	112358410	Missense_Mutation	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		112358410	85664020	6	70078										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	96	0	0	88	16	15.38	-	-	-	A	178936091	G	A	178936091	3	1	838	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09	66577681	178936091	19086339	7	70079										
CNTNAP2	0	genome.wustl.edu	37	chr7	146536957	146536957	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	atgctctacagcgacacaggGagaaactggaaaccctatca	9	11	2	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	7	146536957	146536957	G	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	silent	c.363	p.G121	0.950	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	39	0	0	70	9	11.39	-	-	-	T	146536957	G	T	146536957	2	4	838	1	0	0	0	0	0	0	0	1	3677	1161	41	2		2	CNTNAP2	7	146536957	Silent	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		146536957	12601706	8	70080										
KIF13B	0	genome.wustl.edu	37	chr8	28989832	28989832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	atctaatattcacctgtcccGaagactacgtgtctttgctt	6	11	3	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	8	28989832	28989832	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.2935	p.R979W	0.998	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	62	0	0	83	12	12.63	-	-	-	A	28989832	G	A	28989832	3	1	838	1	0	0	0	0	1	0	0	0	8327	1057	37	1	2617	1	KIF13B	8	28989832	Missense_Mutation	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		28989832	117374190	9	70081										
CHD4	0	genome.wustl.edu	37	chr12	6697097	6697097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	ctttttattttgcccaatccGgtgagctctgctaaaggcct	8	11	1	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	12	6697097	6697097	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.3484	p.R1162W	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	46	0	0	53	11	17.19	-	-	-	A	6697097	G	A	6697097	3	1	838	1	0	0	0	0	1	0	0	0	3356	1115	39	1	2322	1	CHD4	12	6697097	Missense_Mutation	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		6697097	127154798	10	70082										
KRAS	0	genome.wustl.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	12	25398284	25398284	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	76	0	0	139	24	14.72	-	-	-	A	25398284	C	A	25398284	3	1	838	1	0	0	0	0	1	0	0	0	8491	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09	18701187	25398284	108453611	11	70083										
KIAA0182	0	genome.wustl.edu	37	chr16	85701854	85701854	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	cgcccctccaccccagcacaAtgggcagcaggagcccccca	9	21	0	0			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	16	85701854	85701854	A	G	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	missense	c.3239	p.N1080S	0.993	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	71	0	0	82	21	20.39	-	-	-	G	85701854	A	G	85701854	3	3	838	1	0	0	0	0	1	0	0	0	8211	101	4	5	3293	5	KIAA0182	16	85701854	Missense_Mutation	SNP	A	TCGA-E9-A1NG-01A-21D-A14K-09		85701854	4652899	12	70084										
EFCAB5	0	genome.wustl.edu	37	chr17	28417634	28417634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	atgatgaaagtggtccaagtGgcctgctatgaaatacttgg	12	6	0	3			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	17	28417634	28417634	G	A	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	silent	c.3879	p.V1293	0.353	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	62	0	0	98	20	16.95	-	-	-	A	28417634	G	A	28417634	2	1	838	1	0	0	0	0	0	0	0	1	4973	1335	47	4		4	EFCAB5	17	28417634	Silent	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		28417634	52777576	13	70085										
ACE	0	genome.wustl.edu	37	chr17	61562349	61562349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	aggtgacagtcacccatgggAcaagcagccaggcaacaacc	11	13	1	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	17	61562349	61562349	A	G	SNP	ACE	ENST00000490216	human	ensembl	69_37n	1	known	missense	c.121	p.T41A	0.000	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	61	0	0	94	14	12.84	-	-	-	G	61562349	A	G	61562349	3	3	838	1	0	0	0	0	1	0	0	0	136	275	10	5	2092	5	ACE	17	61562349	Missense_Mutation	SNP	A	TCGA-E9-A1NG-01A-21D-A14K-09	33144715	61562349	19632861	14	70086										
CEP250	0	genome.wustl.edu	37	chr20	34057761	34057761	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	cccagtctcagaagcaaaatGaagattatgaaaagatgata	8	6	1	6			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	20	34057761	34057761	G	T	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	nonsense	c.898	p.E300*	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	34	0	0	63	10	13.51	-	-	-	T	34057761	G	T	34057761	4	4	838	1	0	0	0	0	0	1	0	0	3281	1291	45	2	924	2	CEP250	20	34057761	Nonsense_Mutation	SNP	G	TCGA-E9-A1NG-01A-21D-A14K-09		34057761	28967759	15	70087										
HEPH	0	genome.wustl.edu	37	chrX	65420445	65420445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	1	0.977699377679434	0.773584905660377	NA	0.773584905660377	1	1	0	gtgcaagggtgacacagtggCctggcacctgctcggcctgg	16	12	0	1			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	X	65420445	65420445	C	T	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.2090	p.A697V	0.998	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	92	0	0	201	52	20.55	-	-	-	T	65420445	C	T	65420445	3	4	838	1	0	0	0	0	1	0	0	0	7105	739	26	4	2136	4	HEPH	23	65420445	Missense_Mutation	SNP	C	TCGA-E9-A1NG-01A-21D-A14K-09		65420445	89850115	16	70088										
C1orf86	0	genome.wustl.edu	37	chr1	2129485	2129485	+	Frame_Shift_Del	DEL	G	G	-													0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	agttatcagcatgacacagcGgtgctggtgatggtgatggt							TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	1	2129485	2129485	G	-	DEL	C1orf86	ENST00000378545	human	ensembl	69_37n	-1	known	frame_shift_del	c.332	p.P111fs	0.000	NULL	NULL	-	no_errors	C1orf86	HGNC	ENSG00000162585	98	0	0	93	80	45.2	-	-	-	-	2129485	G	-	2129485	7	5	839	1	0	1	0	1	0	0	0	0	2083	1116	39	0	841	0	C1orf86	1	2129485	Frame_Shift_Del	DEL	G	TCGA-E9-A1NH-01A-11D-A14G-09		2129485	247121136	1	70089										
C1orf146	0	genome.wustl.edu	37	chr1	92709922	92709922	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gggcctgaagaatggaaactGatgttcaggattcagcagag	14	6	2	4			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	1	92709922	92709922	G	C	SNP	C1orf146	ENST00000370375	human	ensembl	69_37n	1	known	silent	c.309	p.L103	0.993	NULL	NULL	-	no_errors	C1orf146	HGNC	ENSG00000203910	48	0	0	48	9	15.79	-	-	-	C	92709922	G	C	92709922	2	2	839	1	0	0	0	0	0	0	0	1	2022	1277	45	2		2	C1orf146	1	92709922	Silent	SNP	G	TCGA-E9-A1NH-01A-11D-A14G-09	90580437	92709922	156540699	2	70090										
SLC30A6	0	genome.wustl.edu	37	chr2	32445456	32445456	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	cagccaatgtcctaaactttTcagatcatcacgtaatccca	4	13	3	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	2	32445456	32445456	T	G	SNP	SLC30A6	ENST00000282587	human	ensembl	69_37n	1	known	missense	c.1060	p.S354A	0.973	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A6	HGNC	ENSG00000152683	85	0	0	94	41	30.37	-	-	-	G	32445456	T	G	32445456	3	3	839	1	0	0	0	0	1	0	0	0	14648	1783	62	5	1114	5	SLC30A6	2	32445456	Missense_Mutation	SNP	T	TCGA-E9-A1NH-01A-11D-A14G-09		32445456	210753917	3	70091										
ZC3H6	0	genome.wustl.edu	37	chr2	113088873	113088873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gaaattgagagggaatggaaGtggtcacataggctcttctg	14	5	3	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	2	113088873	113088873	G	A	SNP	ZC3H6	ENST00000343936	human	ensembl	69_37n	1	known	missense	c.2378	p.S793N	0.997	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177	51	0	0	51	25	32.47	-	-	-	A	113088873	G	A	113088873	3	1	839	1	0	0	0	0	1	0	0	0	17667	1029	36	4	2424	4	ZC3H6	2	113088873	Missense_Mutation	SNP	G	TCGA-E9-A1NH-01A-11D-A14G-09	80643417	113088873	130110500	4	70092										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0	50	77	60.63	-	-	-	G	178952085	A	G	178952085	3	3	839	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		178952085	19070345	5	70093										
IL7R	0	genome.wustl.edu	37	chr5	35873588	35873588	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	actctactctctagcatgtgAatttatccagcacaaagctg	6	11	2	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	5	35873588	35873588	A	T	SNP	IL7R	ENST00000303115	human	ensembl	69_37n	1	known	missense	c.544	p.N182Y	0.027	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685	40	0	0	37	21	36.21	-	-	-	T	35873588	A	T	35873588	3	4	839	1	0	0	0	0	1	0	0	0	7759	246	9	5	562	5	IL7R	5	35873588	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		35873588	145041672	6	70094										
DNAH8	0	genome.wustl.edu	37	chr6	38759340	38759340	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	cttccttgtagatcagtgacTtgtgtgaaatgcatattgat	9	6	1	4			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	6	38759340	38759340	T	C	SNP	DNAH8	ENST00000359357	human	ensembl	69_37n	1	known	silent	c.2140	p.L714	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	86	0	0	105	52	33.12	-	-	-	C	38759340	T	C	38759340	2	2	839	1	0	0	0	0	0	0	0	1	4642	1606	56	5		5	DNAH8	6	38759340	Silent	SNP	T	TCGA-E9-A1NH-01A-11D-A14G-09		38759340	132355727	7	70095										
ARID1B	0	genome.wustl.edu	37	chr6	157528608	157528608	+	Frame_Shift_Del	DEL	C	C	-													0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	tttagtcgtcaggagaaattCtatgctacattagttaggta							TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	6	157528608	157528608	C	-	DEL	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	frame_shift_del	c.6453	p.Y2152fs	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	28	0	0	28	15	32.61	-	-	-	-	157528608	C	-	157528608	7	5	839	1	0	1	0	1	0	0	0	0	916	912	32	0	6411	0	ARID1B	6	157528608	Frame_Shift_Del	DEL	C	TCGA-E9-A1NH-01A-11D-A14G-09	118769268	157528608	13586459	8	70096										
ITGB8	0	genome.wustl.edu	37	chr7	20418798	20418798	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	aaattaaattccgttggaaaCgatttatctagaaaaatggc	7	5	1	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	7	20418798	20418798	C	T	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	1	known	silent	c.513	p.N171	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	107	0	0	96	52	35.14	-	-	-	T	20418798	C	T	20418798	2	4	839	1	0	0	0	0	0	0	0	1	7955	535	19	1		1	ITGB8	7	20418798	Silent	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09		20418798	138719865	9	70097										
TLN1	0	genome.wustl.edu	37	chr9	35724267	35724267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	taaaagaacttcctccgcagCagcagcgtctcgtgctcctc	8	15	1	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	9	35724267	35724267	C	T	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	silent	c.576	p.L192	0.998	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	46	0	0	36	20	35.71	-	-	-	T	35724267	C	T	35724267	2	4	839	1	0	0	0	0	0	0	0	1	16042	697	25	4		4	TLN1	9	35724267	Silent	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09		35724267	105489164	10	70098										
PAPPA	0	genome.wustl.edu	37	chr9	119097220	119097220	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gccagcccttctaccacagcCaggcggtacgtgtgagcttc	11	15	1	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	9	119097220	119097220	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	nonsense	c.3478	p.Q1160*	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	30	0	0	30	15	33.33	-	-	-	T	119097220	C	T	119097220	4	4	839	1	0	0	0	0	0	1	0	0	11505	595	21	4	3528	4	PAPPA	9	119097220	Nonsense_Mutation	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09	83372953	119097220	22116211	11	70099										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	61	0	0	63	29	31.52	-	-	-	-	8111434	CA	-	8111433	8	5	839	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-E9-A1NH-01A-11D-A14G-09		8111433	127423314	12	70100										
CSTF3	0	genome.wustl.edu	37	chr11	33129459	33129459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	tttcacttacttgtaacttgGtagtttacccttggtttctc	6	9	2	0			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	11	33129459	33129459	G	A	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.346	p.P116S	1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	143	0	0	84	54	39.13	-	-	-	A	33129459	G	A	33129459	3	1	839	1	0	0	0	0	1	0	0	0	4018	1261	44	4	1875	4	CSTF3	11	33129459	Missense_Mutation	SNP	G	TCGA-E9-A1NH-01A-11D-A14G-09		33129459	101877057	13	70101										
LPXN	0	genome.wustl.edu	37	chr11	58345513	58345513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	ggaagacgagatcaataatgTagacatgaacgctggctagc	12	7	1	4			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	11	58345513	58345513	T	C	SNP	LPXN	ENST00000528954	human	ensembl	69_37n	-1	known	missense	c.7	p.T3A	0.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	13	0	0	11	14	56	-	-	-	C	58345513	T	C	58345513	3	2	839	1	0	0	0	0	1	0	0	0	8995	1638	57	5	1221	5	LPXN	11	58345513	Missense_Mutation	SNP	T	TCGA-E9-A1NH-01A-11D-A14G-09	25216054	58345513	76661003	14	70102										
SMARCD1	0	genome.wustl.edu	37	chr12	50480656	50480656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	aagaggccttgaaacgtcccAtcaaggtaacacaggaaagt	10	9	1	2			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	12	50480656	50480656	A	G	SNP	SMARCD1	ENST00000394963	human	ensembl	69_37n	1	known	missense	c.526	p.I176V	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD1	HGNC	ENSG00000066117	67	0	0	75	21	21.65	-	-	-	G	50480656	A	G	50480656	3	3	839	1	0	0	0	0	1	0	0	0	14866	217	8	5	540	5	SMARCD1	12	50480656	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		50480656	83371239	15	70103										
TMEM132B	0	genome.wustl.edu	37	chr12	125834300	125834300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	acaaatttcccttcaactggAaattgaaatcccacatcctt	3	12	1	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	12	125834300	125834300	A	G	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	1	known	missense	c.355	p.K119E	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	40	0	0	60	16	21.05	-	-	-	G	125834300	A	G	125834300	3	3	839	1	0	0	0	0	1	0	0	0	16141	247	9	5	361	5	TMEM132B	12	125834300	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09	75353644	125834300	8017595	16	70104										
PCCA	0	genome.wustl.edu	37	chr13	101167710	101167710	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	aatatcttaaccagacttgcCgcagaattgaacaaatttat	5	8	1	3			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	13	101167710	101167710	C	T	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	1	known	silent	c.1929	p.A643	0.296	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	66	0	0	59	13	18.06	-	-	-	T	101167710	C	T	101167710	2	4	839	1	0	0	0	0	0	0	0	1	11577	639	23	1		1	PCCA	13	101167710	Silent	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09		101167710	14002168	17	70105										
ABHD13	0	genome.wustl.edu	37	chr13	108882113	108882113	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	tgatgactagacctgaccttGataaaacaaaaatttttctt	5	7	1	5			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	13	108882113	108882113	G	A	SNP	ABHD13	ENST00000375898	human	ensembl	69_37n	1	known	missense	c.547	p.D183N	1.000	pfam_AB_hydrolase_1,pfam_AXE1	pfam_AB_hydrolase_1,pfam_AXE1	-	no_errors	ABHD13	HGNC	ENSG00000139826	55	0	0	68	16	19.05	-	-	-	A	108882113	G	A	108882113	3	1	839	1	0	0	0	0	1	0	0	0	78	1290	45	2	549	2	ABHD13	13	108882113	Missense_Mutation	SNP	G	TCGA-E9-A1NH-01A-11D-A14G-09	7714403	108882113	6287765	18	70106										
DHRS2	0	genome.wustl.edu	37	chr14	24114451	24114451	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	ttgcggtggcaggctactccActcggctctgagaggagtgg	16	10	1	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	14	24114451	24114451	A	G	SNP	DHRS2	ENST00000250383	human	ensembl	69_37n	1	known	missense	c.832	p.T278A	0.007	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS2	HGNC	ENSG00000100867	40	0	0	34	22	39.29	-	-	-	G	24114451	A	G	24114451	3	3	839	1	0	0	0	0	1	0	0	0	4526	159	6	5	873	5	DHRS2	14	24114451	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		24114451	83235089	19	70107										
CBFB	0	genome.wustl.edu	37	chr16	67070564	67070564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	ttttgtggccacaggaaccaAtctgtctctccagttttttc	7	11	2	0			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	16	67070564	67070564	A	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.188	p.N63S	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	85	0	0	31	30	49.18	-	-	-	G	67070564	A	G	67070564	3	3	839	1	0	0	0	0	1	0	0	0	2724	101	4	5	198	5	CBFB	16	67070564	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		67070564	23284189	20	70108										
CDK12	0	genome.wustl.edu	37	chr17	37672031	37672031	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gaagcctatttttcaagccaAtctggaactggctcagctag	9	10	3	0			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	17	37672031	37672031	A	G	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	missense	c.2816	p.N939S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	76	0	0	101	25	19.84	-	-	-	G	37672031	A	G	37672031	3	3	839	1	0	0	0	0	1	0	0	0	3157	101	4	5	2850	5	CDK12	17	37672031	Missense_Mutation	SNP	A	TCGA-E9-A1NH-01A-11D-A14G-09		37672031	43523179	21	70109										
PLIN4	0	genome.wustl.edu	37	chr19	4512292	4512292	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gtgtcttttgtacctatgacCacagacttggtggtgtccag	11	9	1	2			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	19	4512292	4512292	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	silent	c.1638	p.V546	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	94	0	0	74	39	34.51	-	-	-	T	4512292	C	T	4512292	2	4	839	1	0	0	0	0	0	0	0	1	12166	581	21	4		4	PLIN4	19	4512292	Silent	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09		4512292	54616691	22	70110										
MAP4K1	0	genome.wustl.edu	37	chr19	39103372	39103372	+	Frame_Shift_Del	DEL	C	C	-													0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	cagggccacagctgccacttCcggagccatcctgggggcag							TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	19	39103372	39103372	C	-	DEL	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	frame_shift_del	c.544	p.E182fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	29	0	0	30	21	41.18	-	-	-	-	39103372	C	-	39103372	7	5	839	1	0	1	0	1	0	0	0	0	9330	864	30	0	2115	0	MAP4K1	19	39103372	Frame_Shift_Del	DEL	C	TCGA-E9-A1NH-01A-11D-A14G-09	34591080	39103372	20025611	23	70111										
ZNF235	0	genome.wustl.edu	37	chr19	44792859	44792859	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	ggtgatacctttagggtatcTttaccacaatcactattgct	7	9	2	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	19	44792859	44792859	T	C	SNP	ZNF235	ENST00000291182	human	ensembl	69_37n	-1	known	silent	c.729	p.K243	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917	95	0	0	87	49	36.03	-	-	-	C	44792859	T	C	44792859	2	2	839	1	0	0	0	0	0	0	0	1	17884	1606	56	5		5	ZNF235	19	44792859	Silent	SNP	T	TCGA-E9-A1NH-01A-11D-A14G-09	5689487	44792859	14336124	24	70112										
KIR2DS4	0	genome.wustl.edu	37	chr19	55344245	55344245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	gctcatggtcatcatcatggCgtgtgttggtgagtcctgga	14	8	4	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	19	55344245	55344245	C	T	SNP	KIR2DS4	ENST00000339924	human	ensembl	69_37n	1	known	missense	c.26	p.A9V	0.304	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIR2DS4	HGNC	ENSG00000221957	252	0	0	380	63	14.13	-	-	-	T	55344245	C	T	55344245	3	4	839	1	0	0	0	0	1	0	0	0	8372	768	27	1	28	1	KIR2DS4	19	55344245	Missense_Mutation	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09	10551386	55344245	3784738	25	70113										
WAS	0	genome.wustl.edu	37	chrX	48545241	48545241	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.904872247913239	0.992628992628993	5.45945945945946	0.545945945945946	1	1	0	accctgacatcacgagttcaCgataccgtgggctcccagca	9	15	2	1			TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	X	48545241	48545241	C	T	SNP	WAS	ENST00000376701	human	ensembl	69_37n	1	known	nonsense	c.631	p.R211*	0.953	NULL	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	51	0	0	60	17	22.08	-	-	-	T	48545241	C	T	48545241	4	4	839	1	0	0	0	0	0	1	0	0	17348	528	19	1	657	1	WAS	23	48545241	Nonsense_Mutation	SNP	C	TCGA-E9-A1NH-01A-11D-A14G-09		48545241	106725319	26	70114										
PIK3CD	0	genome.wustl.edu	37	chr1	9777113	9777114	+	Frame_Shift_Ins	INS	-	-	CC													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggatgagcagagcaaccctgINSccccccaggtccagaaaccg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	9777113	9777114	-	CC	INS	PIK3CD	ENST00000377346	human	ensembl	69_37n	1	known	frame_shift_ins	c.877_878	p.Q295fs	0.001:0.080	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	41	0	0	11	2	15.38	-	-	-	CC	9777114	-	CC	9777113	7	5	840	1	0	1	1	0	0	0	0	0	11989	1319	46	0	895	0	PIK3CD	1	9777113	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		9777113	239473508	1	70115										
CLSTN1	0	genome.wustl.edu	37	chr1	9804665	9804665	+	Frame_Shift_Del	DEL	G	G	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tccagttgagggatccactcGgggatggcagcagctcggca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	9804665	9804665	G	-	DEL	CLSTN1	ENST00000377298	human	ensembl	69_37n	-1	known	frame_shift_del	c.1022	p.P341fs	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603	33	0	0	11	2	15.38	-	-	-	-	9804665	G	-	9804665	7	5	840	1	0	1	0	1	0	0	0	0	3591	1116	39	0	1971	0	CLSTN1	1	9804665	Frame_Shift_Del	DEL	G	TCGA-E9-A1NI-01A-11W-A16H-09	27552	9804665	239445956	2	70116										
NBL1	0	genome.wustl.edu	37	chr1	19981543	19981544	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	atgatgcttcgggtcctggtINSgggggctgtcctccctgcca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	19981543	19981544	-	G	INS	NBL1	ENST00000289749	human	ensembl	69_37n	1	known	frame_shift_ins	c.125_126	p.A44fs	1.000:0.999	NULL	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C	-	no_errors	NBL1	HGNC	ENSG00000158747	31	0	0	4	2	33.33	-	-	-	G	19981544	-	G	19981543	7	5	840	1	0	1	1	0	0	0	0	0	10262	1696	59	0	131	0	NBL1	1	19981543	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	10176878	19981543	229269078	3	70117										
BARHL2	0	genome.wustl.edu	37	chr1	91182376	91182377	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggcggccgagcccagctgctINSgggggggcggcggcggcggc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	91182376	91182377	-	G	INS	BARHL2	ENST00000370445	human	ensembl	69_37n	-1	known	frame_shift_ins	c.377_376	p.Q126fs	0.999:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032	13	0	0	7	4	36.36	-	-	-	G	91182377	-	G	91182376	7	5	840	1	0	1	1	0	0	0	0	0	1318	1580	55	0	798	0	BARHL2	1	91182376	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	71200833	91182376	158068245	4	70118										
PRPF38B	0	genome.wustl.edu	37	chr1	109241968	109241969	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	aagatcccgaagtattgaccINSgggggttagaacgcaggcgc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	109241968	109241969	-	G	INS	PRPF38B	ENST00000370025	human	ensembl	69_37n	1	known	frame_shift_ins	c.967_968	p.L325fs	1.000:0.997	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	41	0	0	9	2	18.18	-	-	-	G	109241969	-	G	109241968	7	5	840	1	0	1	1	0	0	0	0	0	12649	643	23	0	989	0	PRPF38B	1	109241968	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	18059592	109241968	140008653	5	70119										
GPSM2	0	genome.wustl.edu	37	chr1	109466642	109466643	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	atcatctgttcctgtggtatINScccccaacacggatgagttt							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	109466642	109466643	-	C	INS	GPSM2	ENST00000264126	human	ensembl	69_37n	1	known	frame_shift_ins	c.1621_1622	p.N543fs	0.975:0.997	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	42	0	0	8	2	20	-	-	-	C	109466643	-	C	109466642	7	5	840	1	0	1	1	0	0	0	0	0	6786	1435	50	0	1671	0	GPSM2	1	109466642	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	224674	109466642	139783979	6	70120										
FAM40A	0	genome.wustl.edu	37	chr1	110585774	110585775	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	aagcgcagcatcctgggcctINSccccccgcttcctgaggaca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	110585774	110585775	-	C	INS	FAM40A	ENST00000369795	human	ensembl	69_37n	1	known	frame_shift_ins	c.950_951	p.L320fs	0.999:0.006	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	40	0	0	16	3	15.79	-	-	-	C	110585775	-	C	110585774	7	5	840	1	0	1	1	0	0	0	0	0	5606	1551	54	0	984	0	FAM40A	1	110585774	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	1119132	110585774	138664847	7	70121										
SLC16A1	0	genome.wustl.edu	37	chr1	113460537	113460538	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	accgaagaaaacctgattgaINSggggggccagagtacagagg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	113460537	113460538	-	G	INS	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	frame_shift_ins	c.491_490	p.L164fs	0.998:0.612	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	34	0	0	12	2	14.29	-	-	-	G	113460538	-	G	113460537	7	5	840	1	0	1	1	0	0	0	0	0	14491	304	11	0	1019	0	SLC16A1	1	113460537	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	2874763	113460537	135790084	8	70122										
SELP	0	genome.wustl.edu	37	chr1	169564091	169564091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tcatcgctattggcttattaAcatgtagttctgagcatttc	7	8	2	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	169564091	169564091	A	G	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.2126	p.V709A	0.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	94	0	0	64	61	48.8	-	-	-	G	169564091	A	G	169564091	3	3	840	1	0	0	0	0	1	0	0	0	14107	43	2	5	382	5	SELP	1	169564091	Missense_Mutation	SNP	A	TCGA-E9-A1NI-01A-11W-A16H-09	56103554	169564091	79686530	9	70123										
DHX9	0	genome.wustl.edu	37	chr1	182811768	182811768	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	agatgaccccatcctatgaaAttagagcagtggggaacaaa	10	8	0	4			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	182811768	182811768	A	G	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	1	known	missense	c.67	p.I23V	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	99	0	0	93	155	62.5	-	-	-	G	182811768	A	G	182811768	3	3	840	1	0	0	0	0	1	0	0	0	4552	101	4	5	69	5	DHX9	1	182811768	Missense_Mutation	SNP	A	TCGA-E9-A1NI-01A-11W-A16H-09	13247677	182811768	66438853	10	70124										
IGFN1	0	genome.wustl.edu	37	chr1	201174401	201174402	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gacccaccggctggtggtgaINSggggggcacgtttctcagac							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	201174401	201174402	-	G	INS	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	frame_shift_ins	c.1108_1109	p.A372fs	0.884:0.684	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	36	0	0	8	2	20	-	-	-	G	201174402	-	G	201174401	7	5	840	1	0	1	1	0	0	0	0	0	7644	295	11	0	1146	0	IGFN1	1	201174401	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	18362633	201174401	48076220	11	70125										
ROCK2	0	genome.wustl.edu	37	chr2	11355160	11355160	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tttctgcctgggttttccttAaccgggctgcagtatcagac	10	11	2	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	11355160	11355160	A	T	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	nonsense	c.1742	p.L581*	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	90	0	0	44	28	38.89	-	-	-	T	11355160	A	T	11355160	4	4	840	1	0	0	0	0	0	1	0	0	13604	372	13	5	2496	5	ROCK2	2	11355160	Nonsense_Mutation	SNP	A	TCGA-E9-A1NI-01A-11W-A16H-09		11355160	231844213	12	70126										
PUS10	0	genome.wustl.edu	37	chr2	61238927	61238927	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggaagtttgtaaggtgcatgAaaatccacaccacagaatct	9	8	1	2			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	61238927	61238927	A	G	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	silent	c.99	p.F33	0.988	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	47	0	0	26	12	31.58	-	-	-	G	61238927	A	G	61238927	2	3	840	1	0	0	0	0	0	0	0	1	12914	243	9	5		5	PUS10	2	61238927	Silent	SNP	A	TCGA-E9-A1NI-01A-11W-A16H-09	49883767	61238927	181960446	13	70127										
FAM178B	0	genome.wustl.edu	37	chr2	97636500	97636501	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgttgaagtagcttcctgagINScccccccaggaaaactggag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	97636500	97636501	-	C	INS	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1023_1022	p.S342fs	0.024:0.001	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	50	0	0	38	5	11.63	-	-	-	C	97636501	-	C	97636500	7	5	840	1	0	1	1	0	0	0	0	0	5544	958	34	0	1547	0	FAM178B	2	97636500	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	36397573	97636500	145562873	14	70128										
COL4A4	0	genome.wustl.edu	37	chr2	227896715	227896715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tccaggtggacccgggtcagGaatgtccttaggagctcttc	13	11	2	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	227896715	227896715	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.3763	p.P1255S	0.892	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	36	0	0	17	10	37.04	-	-	-	A	227896715	G	A	227896715	3	1	840	1	0	0	0	0	1	0	0	0	3723	1174	41	2	1345	2	COL4A4	2	227896715	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09	130260215	227896715	15302658	15	70129										
CELSR3	0	genome.wustl.edu	37	chr3	48689914	48689915	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggagcctcctctgcactgccINSggggggcaggcctcccacgt							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	48689914	48689915	-	G	INS	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5707_5706	p.G1902fs	0.002:0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	34	0	0	9	3	25	-	-	-	G	48689915	-	G	48689914	7	5	840	1	0	1	1	0	0	0	0	0	3252	652	23	0	4331	0	CELSR3	3	48689914	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		48689914	149332516	16	70130										
PLXND1	0	genome.wustl.edu	37	chr3	129303234	129303235	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	acagcgtgcttaccctggttINSgggggggaagggcggaaact							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	129303234	129303235	-	G	INS	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2023_2022	p.N674fs	0.000:0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	25	0	0	13	2	13.33	-	-	-	G	129303235	-	G	129303234	7	5	840	1	0	1	1	0	0	0	0	0	12201	1812	63	0	3878	0	PLXND1	3	129303234	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	80613320	129303234	68719196	17	70131										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	85	0	0	38	16	29.63	-	-	-	A	178936082	G	A	178936082	3	1	840	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09	49632848	178936082	19086348	18	70132										
ANAPC4	0	genome.wustl.edu	37	chr4	25395932	25395932	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tttttttcacttttttccagGaaaagaacacaaccacatca	3	10	2	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	25395932	25395932	G	T	SNP	ANAPC4	ENST00000510092	human	ensembl	69_37n	1	known	nonsense	c.877	p.E293*	1.000	pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	65	0	0	42	30	41.67	-	-	-	T	25395932	G	T	25395932	4	4	840	1	0	0	0	0	0	1	0	0	604	1188	41	2	919	2	ANAPC4	4	25395932	Nonsense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09		25395932	165758344	19	70133										
SPATA18	0	genome.wustl.edu	37	chr4	52917821	52917822	+	RNA	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgcggaggccaccgcctggtINSccccccaagtctccatcgcg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	52917821	52917822	-	C	INS	SPATA18	ENST00000506829	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	SPATA18	HGNC	ENSG00000163071	21	0	0	7	2	22.22	-	-	-	C	52917822	-	C	52917821	6	5	840	0	1	1	1	0	0	0	0	0	15094	1682	58	0		0	SPATA18	4	52917821	RNA	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	27521889	52917821	138236455	20	70134										
PCDHA5	0	genome.wustl.edu	37	chr5	140202792	140202792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gccacatcttcacggtgtctGcacgggacgcggacgcgcag	14	14	3	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	140202792	140202792	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	1	known	missense	c.1432	p.A478T	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	67	0	0	22	4	15.38	-	-	-	A	140202792	G	A	140202792	3	1	840	1	0	0	0	0	1	0	0	0	11600	1319	46	4	1434	4	PCDHA5	5	140202792	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09		140202792	40712468	21	70135										
CDHR2	0	genome.wustl.edu	37	chr5	176003133	176003134	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctacgtggacgagcatgcctINSccccccgcatccccatcgat							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	176003133	176003134	-	C	INS	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	frame_shift_ins	c.1141_1142	p.R383fs	0.404:0.405	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	38	0	0	20	4	16.67	-	-	-	C	176003134	-	C	176003133	7	5	840	1	0	1	1	0	0	0	0	0	3148	1551	54	0	1183	0	CDHR2	5	176003133	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	35800341	176003133	4912127	22	70136										
PHF1	0	genome.wustl.edu	37	chr6	33380049	33380050	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cccaggatgcaatggcgcagINScccccccggctgagccgctc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	6	33380049	33380050	-	C	INS	PHF1	ENST00000374516	human	ensembl	69_37n	1	known	frame_shift_ins	c.9_10	p.R5fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF1	HGNC	ENSG00000112511	41	0	0	26	3	10.34	-	-	-	C	33380050	-	C	33380049	7	5	840	1	0	1	1	0	0	0	0	0	11894	962	34	0	11	0	PHF1	6	33380049	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		33380049	137735018	23	70137										
TAX1BP1	0	genome.wustl.edu	37	chr7	27831635	27831636	+	Frame_Shift_Ins	INS	-	-	T													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tttcttcaggaagatacttgINSttttttaaaggagcaacttc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	27831635	27831636	-	T	INS	TAX1BP1	ENST00000396319	human	ensembl	69_37n	1	known	frame_shift_ins	c.1049_1050	p.L352fs	0.000:0.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	43	0	0	11	2	15.38	-	-	-	T	27831636	-	T	27831635	7	5	840	1	0	1	1	0	0	0	0	0	15686	1377	48	0	1079	0	TAX1BP1	7	27831635	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		27831635	131307028	24	70138										
GLI3	0	genome.wustl.edu	37	chr7	42004243	42004244	+	Frame_Shift_Ins	INS	-	-	T													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctggggaaagtaactcagagINStttttggcgctggtcccctg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	42004243	42004244	-	T	INS	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4428_4427	p.N1476fs	1.000:0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	43	0	0	24	3	11.11	-	-	-	T	42004244	-	T	42004243	7	5	840	1	0	1	1	0	0	0	0	0	6491	1020	36	0	318	0	GLI3	7	42004243	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	14172608	42004243	117134420	25	70139										
HECW1	0	genome.wustl.edu	37	chr7	43483924	43483924	+	Frame_Shift_Del	DEL	C	C	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gggaacctcggtctgaggcaCcagagtcctctgagagctgg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	43483924	43483924	C	-	DEL	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	frame_shift_del	c.1153	p.P385fs	0.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	42	0	0	7	2	22.22	-	-	-	-	43483924	C	-	43483924	7	5	840	1	0	1	0	1	0	0	0	0	7093	507	18	0	1187	0	HECW1	7	43483924	Frame_Shift_Del	DEL	C	TCGA-E9-A1NI-01A-11W-A16H-09	1479681	43483924	115654739	26	70140										
LIMK1	0	genome.wustl.edu	37	chr7	73535322	73535323	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cgctactgccccccaaactgINSccccccgagcttcttcccca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	73535322	73535323	-	C	INS	LIMK1	ENST00000336180	human	ensembl	69_37n	1	known	frame_shift_ins	c.1724_1725	p.S578fs	1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	65	0	0	22	3	12	-	-	-	C	73535323	-	C	73535322	7	5	840	1	0	1	1	0	0	0	0	0	8856	1319	46	0	1782	0	LIMK1	7	73535322	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	30051398	73535322	85603341	27	70141										
GPC2	0	genome.wustl.edu	37	chr7	99771553	99771554	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gcagggcataagtgaggggaINSccccccggcacaggggacag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	99771553	99771554	-	C	INS	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	frame_shift_ins	c.797_796	p.V266fs	0.001:0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	20	0	0	17	2	10.53	-	-	-	C	99771554	-	C	99771553	7	5	840	1	0	1	1	0	0	0	0	0	6648	275	10	0	966	0	GPC2	7	99771553	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	26236231	99771553	59367110	28	70142										
EMID2	0	genome.wustl.edu	37	chr7	101187315	101187316	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggaccaccagggcctgcaggINScccccccgggtctaaaggtg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	101187315	101187316	-	C	INS	EMID2	ENST00000313669	human	ensembl	69_37n	1	known	frame_shift_ins	c.641_642	p.G217fs	0.985:0.708	pfam_Collagen	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	EMID2	HGNC	ENSG00000160963	26	0	0	5	2	28.57	-	-	-	C	101187316	-	C	101187315	7	5	840	1	0	1	1	0	0	0	0	0	5129	1203	42	0	657	0	EMID2	7	101187315	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	1415762	101187315	57951348	29	70143										
LRWD1	0	genome.wustl.edu	37	chr7	102108766	102108766	+	Frame_Shift_Del	DEL	C	C	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgccacagcaagaacaacagCccccaggacctcgagaccca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	102108766	102108766	C	-	DEL	LRWD1	ENST00000292616	human	ensembl	69_37n	1	known	frame_shift_del	c.861	p.Q289fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036	56	0	0	17	2	10.53	-	-	-	-	102108766	C	-	102108766	7	5	840	1	0	1	0	1	0	0	0	0	9113	738	26	0	887	0	LRWD1	7	102108766	Frame_Shift_Del	DEL	C	TCGA-E9-A1NI-01A-11W-A16H-09	921451	102108766	57029897	30	70144										
ZNF862	0	genome.wustl.edu	37	chr7	149561357	149561357	+	Frame_Shift_Del	DEL	C	C	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tccccacaccagccaggaggCccccgggatgtcctgaggga							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	149561357	149561357	C	-	DEL	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	frame_shift_del	c.3494	p.M1168fs	0.000	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	34	0	0	12	2	14.29	-	-	-	-	149561357	C	-	149561357	7	5	840	1	0	1	0	1	0	0	0	0	18288	739	26	0	3524	0	ZNF862	7	149561357	Frame_Shift_Del	DEL	C	TCGA-E9-A1NI-01A-11W-A16H-09	47452591	149561357	9577306	31	70145										
KIF13B	0	genome.wustl.edu	37	chr8	29003919	29003919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctgttggcatccaggctggaGgctggaatctgtagggtaac	15	8	1	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	29003919	29003919	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	silent	c.2163	p.A721	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	106	0	0	47	74	61.16	-	-	-	A	29003919	G	A	29003919	2	1	840	1	0	0	0	0	0	0	0	1	8327	987	35	4		4	KIF13B	8	29003919	Silent	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09		29003919	117360103	32	70146										
GPR124	0	genome.wustl.edu	37	chr8	37697097	37697098	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	atgacctctgctgtctttgcINSggggggcatcacactcacca							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	37697097	37697098	-	G	INS	GPR124	ENST00000412232	human	ensembl	69_37n	1	known	frame_shift_ins	c.2468_2469	p.I826fs	0.995:0.064	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR124	HGNC	ENSG00000020181	47	0	0	12	2	14.29	-	-	-	G	37697098	-	G	37697097	7	5	840	1	0	1	1	0	0	0	0	0	6688	768	27	0	2509	0	GPR124	8	37697097	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	8693178	37697097	108666925	33	70147										
TSPYL5	0	genome.wustl.edu	37	chr8	98289663	98289664	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gccacgccggtttccaacgcINSggggggcatttttcggcctt							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	98289663	98289664	-	G	INS	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	frame_shift_ins	c.410_409	p.R137fs	0.730:0.768	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	16	0	0	17	2	10.53	-	-	-	G	98289664	-	G	98289663	7	5	840	1	0	1	1	0	0	0	0	0	16758	768	27	0	847	0	TSPYL5	8	98289663	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	60592566	98289663	48074359	34	70148										
C9orf91	0	genome.wustl.edu	37	chr9	117379520	117379521	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cgggggccactggcccattgINScccccctcctcccctggctg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	117379520	117379521	-	C	INS	C9orf91	ENST00000374049	human	ensembl	69_37n	1	known	frame_shift_ins	c.45_46	p.S17fs	0.659:0.671	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	30	0	0	13	2	13.33	-	-	-	C	117379521	-	C	117379520	7	5	840	1	0	1	1	0	0	0	0	0	2530	1310	46	0	47	0	C9orf91	9	117379520	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		117379520	23833911	35	70149										
RXRA	0	genome.wustl.edu	37	chr9	137313586	137313586	+	Frame_Shift_Del	DEL	G	G	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gcttttcaccctggtggagtGggccaagcggatcccacact							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	137313586	137313586	G	-	DEL	RXRA	ENST00000481739	human	ensembl	69_37n	1	known	frame_shift_del	c.845	p.A283fs	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	110	0	0	14	2	12.5	-	-	-	-	137313586	G	-	137313586	7	5	840	1	0	1	0	1	0	0	0	0	13849	1357	47	0	867	0	RXRA	9	137313586	Frame_Shift_Del	DEL	G	TCGA-E9-A1NI-01A-11W-A16H-09	19934066	137313586	3899845	36	70150										
COL5A1	0	genome.wustl.edu	37	chr9	137642389	137642390	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ttggccccttgtcttcagggINScccccctggacgcccaggcc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	137642389	137642390	-	C	INS	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	frame_shift_ins	c.1496_1497	p.G502fs	1.000:1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	53	0	0	4	2	33.33	-	-	-	C	137642390	-	C	137642389	7	5	840	1	0	1	1	0	0	0	0	0	3726	1217	42	0	1542	0	COL5A1	9	137642389	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	328803	137642389	3571042	37	70151										
NDOR1	0	genome.wustl.edu	37	chr9	140108277	140108278	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	accgacggctactgcagcttINSgggggcagcgccctcctgcc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	140108277	140108278	-	G	INS	NDOR1	ENST00000371521	human	ensembl	69_37n	1	known	frame_shift_ins	c.357_358	p.S121fs	0.230:0.998	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566	23	0	0	5	2	28.57	-	-	-	G	140108278	-	G	140108277	7	5	840	1	0	1	1	0	0	0	0	0	10321	1799	63	0	371	0	NDOR1	9	140108277	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	2465888	140108277	1105154	38	70152										
GATA3	0	genome.wustl.edu	37	chr10	8111496	8111497	+	Frame_Shift_Ins	INS	-	-	GGAG													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gaccaccacaaccacactctINSggaggaggaatgccaatggg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	8111496	8111497	-	GGAG	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.985_986	p.R331fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	79	0	0	35	13	27.08	-	-	-	GGAG	8111497	-	GGAG	8111496	7	5	840	1	0	1	1	0	0	0	0	0	6305	1580	55	0	999	0	GATA3	10	8111496	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		8111496	127423251	39	70153										
ERCC6	0	genome.wustl.edu	37	chr10	50690757	50690758	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctggggaagcatttgaatatINSccccccatggtgatggggac							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	50690757	50690758	-	C	INS	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2145_2144	p.Y716fs	0.736:1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	46	0	0	14	2	12.5	-	-	-	C	50690758	-	C	50690757	7	5	840	1	0	1	1	0	0	0	0	0	5254	1422	50	0	2384	0	ERCC6	10	50690757	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	42579261	50690757	84843990	40	70154										
HPS1	0	genome.wustl.edu	37	chr10	100189562	100189563	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cacaccgtctctgcagagctINSccccccagttgggcccgtgg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	100189562	100189563	-	C	INS	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	frame_shift_ins	c.853_852	p.S284fs	0.033:0.007	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	27	0	0	7	2	22.22	-	-	-	C	100189563	-	C	100189562	7	5	840	1	0	1	1	0	0	0	0	0	7390	1551	54	0	1335	0	HPS1	10	100189562	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	49498805	100189562	35345185	41	70155										
KAZALD1	0	genome.wustl.edu	37	chr10	102824102	102824102	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctgtgaagtgtttgcctaccCcatggcctccatcgagtgga	11	12	0	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	102824102	102824102	C	G	SNP	KAZALD1	ENST00000370200	human	ensembl	69_37n	1	known	missense	c.596	p.P199R	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	KAZALD1	HGNC	ENSG00000107821	53	0	0	16	4	20	-	-	-	G	102824102	C	G	102824102	3	3	840	1	0	0	0	0	1	0	0	0	8043	623	22	4	602	4	KAZALD1	10	102824102	Missense_Mutation	SNP	C	TCGA-E9-A1NI-01A-11W-A16H-09	2634540	102824102	32710645	42	70156										
NEURL	0	genome.wustl.edu	37	chr10	105330708	105330709	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gtccggcagtgctgcccagcINSggggggctcccagccacgcc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	105330708	105330709	-	G	INS	NEURL	ENST00000369780	human	ensembl	69_37n	1	known	frame_shift_ins	c.165_166	p.L57fs	0.002:0.993	NULL	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954	15	0	0	10	2	16.67	-	-	-	G	105330709	-	G	105330708	7	5	840	1	0	1	1	0	0	0	0	0	10417	767	27	0	171	0	NEURL	10	105330708	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	2506606	105330708	30204039	43	70157										
ART5	0	genome.wustl.edu	37	chr11	3660979	3660980	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggtaaccaaaaagacttcatINSgggggggaatcagcacctcg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	3660979	3660980	-	G	INS	ART5	ENST00000359918	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.H227fs	0.986:0.988	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311	37	0	0	9	2	18.18	-	-	-	G	3660980	-	G	3660979	7	5	840	1	0	1	1	0	0	0	0	0	1004	1464	51	0	207	0	ART5	11	3660979	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		3660979	131345537	44	70158										
INTS5	0	genome.wustl.edu	37	chr11	62416115	62416116	+	Frame_Shift_Ins	INS	-	-	T													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cacacagctctccaacatggINStttttgagcgcatctaaaaa							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	62416115	62416116	-	T	INS	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1437_1436	p.N479fs	1.000:1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	28	0	0	12	2	14.29	-	-	-	T	62416116	-	T	62416115	7	5	840	1	0	1	1	0	0	0	0	0	7835	1252	44	0	1626	0	INTS5	11	62416115	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	58755136	62416115	72590401	45	70159										
CAPN1	0	genome.wustl.edu	37	chr11	64956194	64956195	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tggcggcgggggagcaccgcINSggggggctgccgaaactacc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	64956194	64956195	-	G	INS	CAPN1	ENST00000279247	human	ensembl	69_37n	1	known	frame_shift_ins	c.1142_1143	p.C384fs	0.999:0.677	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	25	0	0	24	3	11.11	-	-	-	G	64956195	-	G	64956194	7	5	840	1	0	1	1	0	0	0	0	0	2647	768	27	0	1176	0	CAPN1	11	64956194	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	2540079	64956194	70050322	46	70160										
TBC1D10C	0	genome.wustl.edu	37	chr11	67176564	67176565	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctgggagcccttcgagccatINScccccccgcgcagctgcagg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	67176564	67176565	-	C	INS	TBC1D10C	ENST00000312390	human	ensembl	69_37n	1	known	frame_shift_ins	c.953_954	p.A321fs	0.995:0.756	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	13	0	0	7	2	22.22	-	-	-	C	67176565	-	C	67176564	7	5	840	1	0	1	1	0	0	0	0	0	15692	1435	50	0	983	0	TBC1D10C	11	67176564	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	2220370	67176564	67829952	47	70161										
PDZD3	0	genome.wustl.edu	37	chr11	119058334	119058335	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cagctgagcgggcaggggtgINSccccccggggcccggctgct							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	119058334	119058335	-	C	INS	PDZD3	ENST00000392817	human	ensembl	69_37n	1	known	frame_shift_ins	c.780_781	p.G262fs	0.842:0.987	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD3	HGNC	ENSG00000172367	25	0	0	12	2	14.29	-	-	-	C	119058335	-	C	119058334	7	5	840	1	0	1	1	0	0	0	0	0	11775	1306	46	0	604	0	PDZD3	11	119058334	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	51881770	119058334	15948182	48	70162										
IGSF9B	0	genome.wustl.edu	37	chr11	133815978	133815979	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	catactcagggtccacgtgcINSggcgggtagtagccaaactt							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	133815978	133815979	-	G	INS	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	frame_shift_ins	c.240_239	p.H81fs	0.087:1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	61	0	0	18	4	18.18	-	-	-	G	133815979	-	G	133815978	7	5	840	1	0	1	1	0	0	0	0	0	7660	755	27	0	3881	0	IGSF9B	11	133815978	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	14757644	133815978	1190538	49	70163										
FOXM1	0	genome.wustl.edu	37	chr12	2968087	2968088	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gagcctttgcggtgattcaaINSgggggggagcactttgcaag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	2968087	2968088	-	G	INS	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2123_2122	p.L708fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	47	0	0	19	3	13.64	-	-	-	G	2968088	-	G	2968087	7	5	840	1	0	1	1	0	0	0	0	0	6066	72	3	0	286	0	FOXM1	12	2968087	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		2968087	130883808	50	70164										
PLEKHG6	0	genome.wustl.edu	37	chr12	6437069	6437070	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggcccagctgcagaggatgcINSgggggccccacatcattcag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	6437069	6437070	-	G	INS	PLEKHG6	ENST00000011684	human	ensembl	69_37n	1	known	frame_shift_ins	c.2320_2321	p.P776fs	0.990:0.941	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323	15	0	0	12	2	14.29	-	-	-	G	6437070	-	G	6437069	7	5	840	1	0	1	1	0	0	0	0	0	12148	759	27	0	2420	0	PLEKHG6	12	6437069	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	3468982	6437069	127414826	51	70165										
MAP3K12	0	genome.wustl.edu	37	chr12	53876672	53876672	+	Frame_Shift_Del	DEL	T	T	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gtctggggacgatgaagacaTtttgcggagcaggaggtcat							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	53876672	53876672	T	-	DEL	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	frame_shift_del	c.1816	p.M606fs	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	27	0	0	14	2	12.5	-	-	-	-	53876672	T	-	53876672	7	5	840	1	0	1	0	1	0	0	0	0	9317	1493	52	0	779	0	MAP3K12	12	53876672	Frame_Shift_Del	DEL	T	TCGA-E9-A1NI-01A-11W-A16H-09	47439603	53876672	79975223	52	70166										
ATP7B	0	genome.wustl.edu	37	chr13	52511651	52511651	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gctgcctcgatggccacatcCgtgccggtgccaatggccac	12	16	0	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	13	52511651	52511651	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.3864	p.T1288	0.161	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	57	0	0	32	6	15.79	-	-	-	T	52511651	C	T	52511651	2	4	840	1	0	0	0	0	0	0	0	1	1195	639	23	1		1	ATP7B	13	52511651	Silent	SNP	C	TCGA-E9-A1NI-01A-11W-A16H-09		52511651	62658227	53	70167										
LINGO1	0	genome.wustl.edu	37	chr15	77908193	77908194	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gggctgccagcaggccaggaINSgggggctgggcatgctcctc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	15	77908193	77908194	-	G	INS	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	frame_shift_ins	c.56_55	p.L19fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	15	0	0	16	2	11.11	-	-	-	G	77908194	-	G	77908193	7	5	840	1	0	1	1	0	0	0	0	0	8870	304	11	0	1810	0	LINGO1	15	77908193	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		77908193	24623199	54	70168										
HN1L	0	genome.wustl.edu	37	chr16	1735531	1735531	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggcctaataggatggcatctAatatttttggaccaacagaa	9	7	1	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	1735531	1735531	A	G	SNP	HN1L	ENST00000248098	human	ensembl	69_37n	1	known	missense	c.136	p.N46D	0.995	NULL	NULL	-	no_errors	HN1L	HGNC	ENSG00000206053	61	0	0	18	58	76.32	-	-	-	G	1735531	A	G	1735531	3	3	840	1	0	0	0	0	1	0	0	0	7301	362	13	5	142	5	HN1L	16	1735531	Missense_Mutation	SNP	A	TCGA-E9-A1NI-01A-11W-A16H-09		1735531	88619222	55	70169										
TRAF7	0	genome.wustl.edu	37	chr16	2223196	2223196	+	Frame_Shift_Del	DEL	G	G	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cccgcaggtgcacgttcatcGggaaccaggacacttacgag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	2223196	2223196	G	-	DEL	TRAF7	ENST00000326181	human	ensembl	69_37n	1	known	frame_shift_del	c.808	p.N271fs	0.999	superfamily_TRAF-like,pfscan_Znf_TRAF	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	36	0	0	7	2	22.22	-	-	-	-	2223196	G	-	2223196	7	5	840	1	0	1	0	1	0	0	0	0	16542	1116	39	0	842	0	TRAF7	16	2223196	Frame_Shift_Del	DEL	G	TCGA-E9-A1NI-01A-11W-A16H-09	487665	2223196	88131557	56	70170										
FAM92B	0	genome.wustl.edu	37	chr16	85135924	85135924	+	Frame_Shift_Del	DEL	A	A	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctcaatagttacaaagtcacAaaaaaatttctgtggggaga							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	85135924	85135924	A	-	DEL	FAM92B	ENST00000539556	human	ensembl	69_37n	-1	known	frame_shift_del	c.547	p.C183fs	0.000	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92B	HGNC	ENSG00000153789	47	0	0	12	2	14.29	-	-	-	-	85135924	A	-	85135924	7	5	840	1	0	1	0	1	0	0	0	0	5699	130	5	0	379	0	FAM92B	16	85135924	Frame_Shift_Del	DEL	A	TCGA-E9-A1NI-01A-11W-A16H-09	82912728	85135924	5218829	57	70171										
RNMTL1	0	genome.wustl.edu	37	chr17	694866	694866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ataatctggaatgggaaaccGtgcccaattacctgccccct	8	13	1	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	694866	694866	G	A	SNP	RNMTL1	ENST00000304478	human	ensembl	69_37n	1	known	missense	c.820	p.V274M	0.004	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd	-	no_errors	RNMTL1	HGNC	ENSG00000171861	46	0	0	14	10	41.67	-	-	-	A	694866	G	A	694866	3	1	840	1	0	0	0	0	1	0	0	0	13593	1145	40	1	834	1	RNMTL1	17	694866	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09		694866	80500344	58	70172										
SERPINF1	0	genome.wustl.edu	37	chr17	1670275	1670276	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	agctgccagaaccctgccagINSccccccggaggaggtcagta							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	1670275	1670276	-	C	INS	SERPINF1	ENST00000254722	human	ensembl	69_37n	1	known	frame_shift_ins	c.71_72	p.E27fs	0.004:0.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386	22	0	0	15	2	11.76	-	-	-	C	1670276	-	C	1670275	7	5	840	1	0	1	1	0	0	0	0	0	14202	971	34	0	73	0	SERPINF1	17	1670275	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	975409	1670275	79524935	59	70173										
POLR2A	0	genome.wustl.edu	37	chr17	7388097	7388098	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tccgccatgcacgggggtggINSccccccctcgggggacagcg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	7388097	7388098	-	C	INS	POLR2A	ENST00000322644	human	ensembl	69_37n	1	known	frame_shift_ins	c.14_15	p.S8fs	1.000:0.998	NULL	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	19	0	0	8	4	33.33	-	-	-	C	7388098	-	C	7388097	7	5	840	1	0	1	1	0	0	0	0	0	12288	1203	42	0	16	0	POLR2A	17	7388097	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	5717822	7388097	73807113	60	70174										
VAMP2	0	genome.wustl.edu	37	chr17	8065660	8065661	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	cctccccagccggggcagcaINSgggggggccgtggcagcggt							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	8065660	8065661	-	G	INS	VAMP2	ENST00000316509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.30_29	p.A11fs	0.999:0.998	pirsf_Synaptobrevin_met/fun	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP2	HGNC	ENSG00000220205	16	0	0	10	2	16.67	-	-	-	G	8065661	-	G	8065660	7	5	840	1	0	1	1	0	0	0	0	0	17210	175	7	0	336	0	VAMP2	17	8065660	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	677563	8065660	73129550	61	70175										
MAP2K4	0	genome.wustl.edu	37	chr17	11984789	11984790	+	Frame_Shift_Ins	INS	-	-	T													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ggagaaattggacgaggagcINSttatggttctgtcaacaaaa							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	11984789	11984790	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_ins	c.368_369	p.Y124fs	1.000:0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	46	0	0	11	21	65.62	-	-	-	T	11984790	-	T	11984789	7	5	840	1	0	1	1	0	0	0	0	0	9310	797	28	0	345	0	MAP2K4	17	11984789	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	3919129	11984789	69210421	62	70176										
SLC46A1	0	genome.wustl.edu	37	chr17	26732938	26732939	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ccgcgctgcggttgctgcagINSccccccctttggcgggtgcc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	26732938	26732939	-	C	INS	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	frame_shift_ins	c.195_194	p.C66fs	0.961:0.287	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	17	0	0	6	2	25	-	-	-	C	26732939	-	C	26732938	7	5	840	1	0	1	1	0	0	0	0	0	14733	958	34	0	1205	0	SLC46A1	17	26732938	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	14748149	26732938	54462272	63	70177										
FOXN1	0	genome.wustl.edu	37	chr17	26862048	26862049	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gctgcgggcccagccaggcaINSccccccaggactcgcctctg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	26862048	26862049	-	C	INS	FOXN1	ENST00000226247	human	ensembl	69_37n	1	known	frame_shift_ins	c.1459_1460	p.Q489fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	19	0	0	5	2	28.57	-	-	-	C	26862049	-	C	26862048	7	5	840	1	0	1	1	0	0	0	0	0	6067	159	6	0	1485	0	FOXN1	17	26862048	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	129110	26862048	54333162	64	70178										
SPOP	0	genome.wustl.edu	37	chr17	47688736	47688736	+	Frame_Shift_Del	DEL	A	A	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tcccacagtcctcctaactcAtctgccagccggcactcagg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	47688736	47688736	A	-	DEL	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	frame_shift_del	c.564	p.D188fs	0.993	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOP	HGNC	ENSG00000121067	55	0	0	49	9	15	-	-	-	-	47688736	A	-	47688736	7	5	840	1	0	1	0	1	0	0	0	0	15175	214	8	0	580	0	SPOP	17	47688736	Frame_Shift_Del	DEL	A	TCGA-E9-A1NI-01A-11W-A16H-09	20826688	47688736	33506474	65	70179										
DLX3	0	genome.wustl.edu	37	chr17	48068892	48068892	+	Frame_Shift_Del	DEL	C	C	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gatgggtgctcagtacacagCcccagggttgggcgggggcc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	48068892	48068892	C	-	DEL	DLX3	ENST00000434704	human	ensembl	69_37n	-1	known	frame_shift_del	c.853	p.A285fs	1.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195	28	0	0	15	2	11.76	-	-	-	-	48068892	C	-	48068892	7	5	840	1	0	1	0	1	0	0	0	0	4608	739	26	0	14	0	DLX3	17	48068892	Frame_Shift_Del	DEL	C	TCGA-E9-A1NI-01A-11W-A16H-09	380156	48068892	33126318	66	70180										
TBX2	0	genome.wustl.edu	37	chr17	59479053	59479054	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctccctcccaggcggatgttINScccccccttcaaggtgcgag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	59479053	59479054	-	C	INS	TBX2	ENST00000240328	human	ensembl	69_37n	1	novel	frame_shift_ins	c.404_405	p.F138fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068	23	0	0	7	2	22.22	-	-	-	C	59479054	-	C	59479053	7	5	840	1	0	1	1	0	0	0	0	0	15750	1783	62	0	410	0	TBX2	17	59479053	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	11410161	59479053	21716157	67	70181										
GALR2	0	genome.wustl.edu	37	chr17	74073099	74073099	+	Frame_Shift_Del	DEL	C	C	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tcttctgcctctgctggatgCcccaccacgcgctcatcctc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	74073099	74073099	C	-	DEL	GALR2	ENST00000329003	human	ensembl	69_37n	1	known	frame_shift_del	c.751	p.H252fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_Galnin_2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687	12	0	0	12	2	14.29	-	-	-	-	74073099	C	-	74073099	7	5	840	1	0	1	0	1	0	0	0	0	6278	739	26	0	757	0	GALR2	17	74073099	Frame_Shift_Del	DEL	C	TCGA-E9-A1NI-01A-11W-A16H-09	14594046	74073099	7122111	68	70182										
ZNF519	0	genome.wustl.edu	37	chr18	14124364	14124364	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctcacccagggagacgaggtTtctgtagttctccaacatca	9	12	4	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	18	14124364	14124364	T	A	SNP	ZNF519	ENST00000590202	human	ensembl	69_37n	-1	known	missense	c.115	p.N39Y	0.254	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	92	0	0	39	36	48	-	-	-	A	14124364	T	A	14124364	3	1	840	1	0	0	0	0	1	0	0	0	18060	1841	64	5	1515	5	ZNF519	18	14124364	Missense_Mutation	SNP	T	TCGA-E9-A1NI-01A-11W-A16H-09		14124364	63952884	69	70183										
CLPP	0	genome.wustl.edu	37	chr19	6361606	6361607	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgtggcccggaatattggtaINSgggggggcccgggtggcgtc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	6361606	6361607	-	G	INS	CLPP	ENST00000245816	human	ensembl	69_37n	1	known	frame_shift_ins	c.21_22	p.A9fs	0.000:0.003	NULL	pfam_ClpP/TepA,prints_ClpP	-	no_errors	CLPP	HGNC	ENSG00000125656	18	0	0	16	2	11.11	-	-	-	G	6361607	-	G	6361606	7	5	840	1	0	1	1	0	0	0	0	0	3582	407	15	0	23	0	CLPP	19	6361606	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		6361606	52767377	70	70184										
ILF3	0	genome.wustl.edu	37	chr19	10794365	10794366	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgcacaacgaagtgcccccaINSccccccaaccttcgagggcg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	10794365	10794366	-	C	INS	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	frame_shift_ins	c.1917_1918	p.N641fs	0.918:0.998	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	48	0	0	10	2	16.67	-	-	-	C	10794366	-	C	10794365	7	5	840	1	0	1	1	0	0	0	0	0	7766	146	6	0	1975	0	ILF3	19	10794365	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	4432759	10794365	48334618	71	70185										
CRTC1	0	genome.wustl.edu	37	chr19	18879553	18879554	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	accgtcctctctcccccagtINScccccccagagaaccctggc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	18879553	18879554	-	C	INS	CRTC1	ENST00000338797	human	ensembl	69_37n	1	known	frame_shift_ins	c.1318_1319	p.E443fs	1.000:1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662	19	0	0	7	2	22.22	-	-	-	C	18879554	-	C	18879553	7	5	840	1	0	1	1	0	0	0	0	0	3929	1667	58	0	1360	0	CRTC1	19	18879553	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	8085188	18879553	40249430	72	70186										
EID2B	0	genome.wustl.edu	37	chr19	40023339	40023340	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ccgaaccccgccgccgactgINSccccccgcagtacgtcgctg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	40023339	40023340	-	C	INS	EID2B	ENST00000326282	human	ensembl	69_37n	-1	known	frame_shift_ins	c.104_103	p.A35fs	0.002:0.003	NULL	NULL	-	no_errors	EID2B	HGNC	ENSG00000176401	9	0	0	4	2	33.33	-	-	-	C	40023340	-	C	40023339	7	5	840	1	0	1	1	0	0	0	0	0	5023	1319	46	0	385	0	EID2B	19	40023339	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	21143786	40023339	19105644	73	70187										
SULT2B1	0	genome.wustl.edu	37	chr19	49102489	49102490	+	Frame_Shift_Ins	INS	-	-	A													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gggggatgccgaccttccccINStgggatgaagacccggagga							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	49102489	49102490	-	A	INS	SULT2B1	ENST00000201586	human	ensembl	69_37n	1	known	frame_shift_ins	c.924_925	p.W308fs	0.420:0.969	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT2B1	HGNC	ENSG00000088002	19	0	0	12	2	14.29	-	-	-	A	49102490	-	A	49102489	7	5	840	1	0	1	1	0	0	0	0	0	15473	668	24	0	976	0	SULT2B1	19	49102489	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	9079150	49102489	10026494	74	70188										
POLD1	0	genome.wustl.edu	37	chr19	50906420	50906421	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	gctcaccctgcggccctgtgINScccccatcctgggtgccaag							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	50906420	50906421	-	C	INS	POLD1	ENST00000440232	human	ensembl	69_37n	1	known	frame_shift_ins	c.1081_1082	p.I363fs	0.991:1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	37	0	0	16	2	11.11	-	-	-	C	50906421	-	C	50906420	7	5	840	1	0	1	1	0	0	0	0	0	12264	1319	46	0	1111	0	POLD1	19	50906420	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	1803931	50906420	8222563	75	70189										
MCM3AP	0	genome.wustl.edu	37	chr21	47664719	47664720	+	Splice_Site	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctccccaggtcaagcacgtaINSccccccaggggtggaaggtc							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	21	47664719	47664720	-	C	INS	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	splice_site_ins	c.5038+1_5038+1	e23+1	0.996:1.000	-	-	-	no_errors	MCM3AP	HGNC	ENSG00000160294	20	0	0	9	2	18.18	-	-	-	C	47664720	-	C	47664719	8	5	840	1	0	1	1	0	0	0	1	0	9459	405	14	0	926	0	MCM3AP	21	47664719	Splice_Site	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09		47664719	465176	76	70190										
CCT8L2	0	genome.wustl.edu	37	chr22	17073281	17073281	+	Frame_Shift_Del	DEL	G	G	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	caggaacttctgccggccgtGggggccatagcaaggccgga							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	17073281	17073281	G	-	DEL	CCT8L2	ENST00000359963	human	ensembl	69_37n	-1	known	frame_shift_del	c.160	p.H54fs	0.849	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	51	0	0	17	2	10.53	-	-	-	-	17073281	G	-	17073281	7	5	840	1	0	1	0	1	0	0	0	0	2990	1348	47	0	1517	0	CCT8L2	22	17073281	Frame_Shift_Del	DEL	G	TCGA-E9-A1NI-01A-11W-A16H-09		17073281	34231285	77	70191										
MN1	0	genome.wustl.edu	37	chr22	28196398	28196398	+	Frame_Shift_Del	DEL	G	G	-													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tagcaggatccacagggccaGggggccccccagtgtggaaa							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	28196398	28196398	G	-	DEL	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	frame_shift_del	c.134	p.P45fs	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	54	0	0	11	2	15.38	-	-	-	-	28196398	G	-	28196398	7	5	840	1	0	1	0	1	0	0	0	0	9745	1000	35	0	3836	0	MN1	22	28196398	Frame_Shift_Del	DEL	G	TCGA-E9-A1NI-01A-11W-A16H-09	11123117	28196398	23108168	78	70192										
ZBED1	0	genome.wustl.edu	37	chrX	2408674	2408674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tcggcgttggtgtcgaagccGaaatacttccacaccttgct	10	12	0	0			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	2408674	2408674	G	T	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	missense	c.87	p.F29L	0.994	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	132	0	0	60	20	25	-	-	-	T	2408674	G	T	2408674	3	4	840	1	0	0	0	0	1	0	0	0	17614	1049	37	3	2001	3	ZBED1	23	2408674	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09		2408674	152861886	79	70193										
HDAC6	0	genome.wustl.edu	37	chrX	48681900	48681901	+	Frame_Shift_Ins	INS	-	-	C													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctcgagcacagaccaccagaINScccccccaacctcacctgtg							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	48681900	48681901	-	C	INS	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	frame_shift_ins	c.3133_3134	p.T1048fs	0.328:0.014	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	24	0	0	15	3	16.67	-	-	-	C	48681901	-	C	48681900	7	5	840	1	0	1	1	0	0	0	0	0	7062	275	10	0	3185	0	HDAC6	23	48681900	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	46273226	48681900	106588660	80	70194										
KIAA2022	0	genome.wustl.edu	37	chrX	73963324	73963324	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	tgggaaaaatcactgctctgCttcagggccccactcttaga	9	12	4	1			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	73963324	73963324	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.1068	p.K356	0.996	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	74	0	0	101	14	12.17	-	-	-	T	73963324	C	T	73963324	2	4	840	1	0	0	0	0	0	0	0	1	8321	796	28	4		4	KIAA2022	23	73963324	Silent	SNP	C	TCGA-E9-A1NI-01A-11W-A16H-09	25281424	73963324	81307236	81	70195										
PCDH19	0	genome.wustl.edu	37	chrX	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G													0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ccaaggcgatcacgtagcccINSgggggggcgctctcgctgac							TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	25	0	0	13	2	13.33	-	-	-	G	99662505	-	G	99662504	7	5	840	1	0	1	1	0	0	0	0	0	11587	639	23	0	2378	0	PCDH19	23	99662504	Frame_Shift_Ins	INS	-	TCGA-E9-A1NI-01A-11W-A16H-09	25699180	99662504	55608056	82	70196										
PCDH19	0	genome.wustl.edu	37	chrX	99662746	99662746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0120481927710843	1	0.957674047556388	0.836879432624113	0	0.941489361702128	1	1	0	ctgaaagagctcgcgcgtgcGgtcgttgacgtagccataga	14	10	0	4			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	99662746	99662746	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.850	p.R284C	0.087	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	74	0	0	33	14	29.79	-	-	-	A	99662746	G	A	99662746	3	1	840	1	0	0	0	0	1	0	0	0	11587	1116	39	1	2620	1	PCDH19	23	99662746	Missense_Mutation	SNP	G	TCGA-E9-A1NI-01A-11W-A16H-09	242	99662746	55607814	83	70197										
NCAPG	0	genome.wustl.edu	37	chr4	17819064	17819064	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	actggtgggactctgtaaaaAcaatgatggcaggtacataa	11	6	1	1			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	4	17819064	17819064	A	T	SNP	NCAPG	ENST00000251496	human	ensembl	69_37n	1	known	missense	c.956	p.N319I	0.205	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	66	0	0	42	5	10.64	-	-	-	T	17819064	A	T	17819064	3	4	841	1	0	0	0	0	1	0	0	0	10279	43	2	5	978	5	NCAPG	4	17819064	Missense_Mutation	SNP	A	TCGA-E9-A1QZ-01A-21D-A167-09		17819064	173335212	1	70198										
C1QTNF3	0	genome.wustl.edu	37	chr5	34024111	34024111	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gctgaaggtgaagaaatacaCacctgaaaaaagcaggtata	10	6	0	4			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	5	34024111	34024111	C	A	SNP	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	missense	c.703	p.V235L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	53	0	0	51	11	17.74	-	-	-	A	34024111	C	A	34024111	3	1	841	1	0	0	0	0	1	0	0	0	1983	478	17	4	264	4	C1QTNF3	5	34024111	Missense_Mutation	SNP	C	TCGA-E9-A1QZ-01A-21D-A167-09		34024111	146891149	2	70199										
ASF1A	0	genome.wustl.edu	37	chr6	119228580	119228580	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	NA	0	1	1	0	cctctagcttcaaaggaataTtttggcatctaatcccaggg							TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	6	119228580	119228580	T	-	DEL	ASF1A	ENST00000229595	human	ensembl	69_37n	1	known	frame_shift_del	c.416	p.L140fs	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875	76	0	0	36	13	26.53	-	-	-	-	119228580	T	-	119228580	7	5	841	1	0	1	0	1	0	0	0	0	1041	1493	52	0	317	0	ASF1A	6	119228580	Frame_Shift_Del	DEL	T	TCGA-E9-A1QZ-01A-21D-A167-09		119228580	51886487	3	70200										
OPLAH	0	genome.wustl.edu	37	chr8	145106682	145106682	+	RNA	DEL	T	T	-													0	0	1	0	NA	0	1	1	0	ccagattcaccgtccggccgTttttgcggatcagcaggttt							TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	8	145106682	145106682	T	-	DEL	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	19	0	0	9	2	18.18	-	-	-	-	145106682	T	-	145106682	6	5	841	0	1	1	0	1	0	0	0	0	10949	1725	60	0		0	OPLAH	8	145106682	RNA	DEL	T	TCGA-E9-A1QZ-01A-21D-A167-09		145106682	1257340	4	70201										
DYRK4	0	genome.wustl.edu	37	chr12	4708239	4708239	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aataacaactttcaaggcttCagtctgtccatagttcggcg	8	10	3	0			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	12	4708239	4708239	C	A	SNP	DYRK4	ENST00000010132	human	ensembl	69_37n	1	known	missense	c.606	p.F202L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	82	0	0	75	10	11.76	-	-	-	A	4708239	C	A	4708239	3	1	841	1	0	0	0	0	1	0	0	0	4893	825	29	2	624	2	DYRK4	12	4708239	Missense_Mutation	SNP	C	TCGA-E9-A1QZ-01A-21D-A167-09		4708239	129143656	5	70202										
PHF12	0	genome.wustl.edu	37	chr17	27239625	27239625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agcccagtggccttgaatctGtcaacggaggtcctatctgt	11	11	3	1			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	17	27239625	27239625	G	A	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.1964	p.T655I	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	46	0	0	44	6	12	-	-	-	A	27239625	G	A	27239625	3	1	841	1	0	0	0	0	1	0	0	0	11897	1377	48	4	1104	4	PHF12	17	27239625	Missense_Mutation	SNP	G	TCGA-E9-A1QZ-01A-21D-A167-09		27239625	53955585	6	70203										
ASXL3	0	genome.wustl.edu	37	chr18	31325521	31325521	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	caaaagcggctgctcccctcGtgtagcttccagcagaacct	9	15	0	1			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	18	31325521	31325521	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	silent	c.5709	p.S1903	0.003	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	52	0	0	31	6	16.22	-	-	-	A	31325521	G	A	31325521	2	1	841	1	0	0	0	0	0	0	0	1	1072	1132	40	1		1	ASXL3	18	31325521	Silent	SNP	G	TCGA-E9-A1QZ-01A-21D-A167-09		31325521	46751727	7	70204										
PSG1	0	genome.wustl.edu	37	chr19	43382212	43382212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctgtttctcgtccactatAtgcaggcccatatataatta	6	10	1	0			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	19	43382212	43382212	A	G	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.283	p.Y95H	0.003	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	124	0	0	92	21	18.58	-	-	-	G	43382212	A	G	43382212	3	3	841	1	0	0	0	0	1	0	0	0	12733	449	16	5	1049	5	PSG1	19	43382212	Missense_Mutation	SNP	A	TCGA-E9-A1QZ-01A-21D-A167-09		43382212	15746771	8	70205										
COL4A5	0	genome.wustl.edu	37	chrX	107823802	107823802	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggcctcctggacctccagggAtacgtggtcctccagtaagt	12	13	0	0			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	X	107823802	107823802	A	G	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.820	p.I274V	0.789	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	96	0	0	95	18	15.93	-	-	-	G	107823802	A	G	107823802	3	3	841	1	0	0	0	0	1	0	0	0	3724	333	12	5	874	5	COL4A5	23	107823802	Missense_Mutation	SNP	A	TCGA-E9-A1QZ-01A-21D-A167-09		107823802	47446758	9	70206										
SDF4	0	genome.wustl.edu	37	chr1	1163972	1163972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	attgaggtgcccgtccatctCcagcttcaccccgttcaggt	9	15	3	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	1	1163972	1163972	C	T	SNP	SDF4	ENST00000360001	human	ensembl	69_37n	-1	known	missense	c.202	p.E68K	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SDF4	HGNC	ENSG00000078808	41	0	0	9	4	30.77	-	-	-	T	1163972	C	T	1163972	3	4	842	1	0	0	0	0	1	0	0	0	14050	864	30	2	1026	2	SDF4	1	1163972	Missense_Mutation	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09		1163972	248086649	1	70207										
HIVEP3	0	genome.wustl.edu	37	chr1	42049238	42049238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	gatctcagcgtaggacttggCgttggtgtttggggggctga	18	6	1	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	1	42049238	42049238	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.1231	p.A411T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	136	0	0	27	19	41.3	-	-	-	T	42049238	C	T	42049238	3	4	842	1	0	0	0	0	1	0	0	0	7239	768	27	1	6013	1	HIVEP3	1	42049238	Missense_Mutation	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09	40885266	42049238	207201383	2	70208										
ST6GALNAC3	0	genome.wustl.edu	37	chr1	76877751	76877751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	aaactcaggtcagatggttgGccagaaggtgggaaatgaga	15	5	2	3			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	1	76877751	76877751	G	A	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	69_37n	1	known	missense	c.272	p.G91D	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005	115	0	0	52	17	24.29	-	-	-	A	76877751	G	A	76877751	3	1	842	1	0	0	0	0	1	0	0	0	15316	1203	42	4	282	4	ST6GALNAC3	1	76877751	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09	34828513	76877751	172372870	3	70209										
CTNNA2	0	genome.wustl.edu	37	chr2	80874927	80874927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	attccagacacgagttcgacGaggttctcagaagaaacaca	9	10	1	3			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	2	80874927	80874927	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.2750	p.R917Q	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	63	0	0	33	16	32.65	-	-	-	A	80874927	G	A	80874927	3	1	842	1	0	0	0	0	1	0	0	0	4045	1058	37	1	2506	1	CTNNA2	2	80874927	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		80874927	162324446	4	70210										
TTN	0	genome.wustl.edu	37	chr2	179615666	179615666	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	aatttcaccatataaatggtCttttggtagactttccttta	5	7	2	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	2	179615666	179615666	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.11461	p.D3821N	0.116	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	89	0	0	72	23	24.21	-	-	-	T	179615666	C	T	179615666	3	4	842	1	0	0	0	0	1	0	0	0	16832	913	32	2	98836	2	TTN	2	179615666	Missense_Mutation	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09	98740739	179615666	63583707	5	70211										
DNAH12	0	genome.wustl.edu	37	chr3	57357142	57357142	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	gggcatccaggacactgcaaGatggcaattctgtaggcaca	12	10	1	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	3	57357142	57357142	G	C	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.7672	p.L2558V	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	194	0	0	81	26	24.3	-	-	-	C	57357142	G	C	57357142	3	2	842	1	0	0	0	0	1	0	0	0	4636	942	33	2	1650	2	DNAH12	3	57357142	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		57357142	140665288	6	70212										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0	73	24	24.74	-	-	-	A	178936091	G	A	178936091	3	1	842	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09	121578949	178936091	19086339	7	70213										
EGR1	0	genome.wustl.edu	37	chr5	137803326	137803326	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	cacacaggcgaaaagcccttCgcctgcgacatctgtggaag	11	13	1	0			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	5	137803326	137803326	C	T	SNP	EGR1	ENST00000239938	human	ensembl	69_37n	1	known	silent	c.1188	p.F396	0.930	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	82	0	0	24	9	27.27	-	-	-	T	137803326	C	T	137803326	2	4	842	1	0	0	0	0	0	0	0	1	5006	883	31	1		1	EGR1	5	137803326	Silent	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09		137803326	43111934	8	70214										
DCBLD1	0	genome.wustl.edu	37	chr6	117861948	117861948	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	accagaggatagccttgaagGtggagctcattggttgccag	14	8	1	2			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	6	117861948	117861948	G	A	SNP	DCBLD1	ENST00000338728	human	ensembl	69_37n	1	known	missense	c.1219	p.V407M	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465	77	0	0	22	14	38.89	-	-	-	A	117861948	G	A	117861948	3	1	842	1	0	0	0	0	1	0	0	0	4311	1261	44	4	1257	4	DCBLD1	6	117861948	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		117861948	53253119	9	70215										
ST18	0	genome.wustl.edu	37	chr8	53074080	53074080	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	actgtggctctgggagaggtGatggcttgtgacgggaaatt	17	5	1	3			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	8	53074080	53074080	G	A	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	silent	c.1449	p.I483	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	220	0	0	157	26	14.13	-	-	-	A	53074080	G	A	53074080	2	1	842	1	0	0	0	0	0	0	0	1	15303	1280	45	2		2	ST18	8	53074080	Silent	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		53074080	93289942	10	70216										
ANKRD20A4	0	genome.wustl.edu	37	chr9	69421983	69421983	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	caaaacaacttgaaccaactGttcagtcactagagatgaaa	6	9	2	3			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	9	69421983	69421983	G	C	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	1	known	missense	c.1447	p.V483L	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	15	0	0	8	3	27.27	-	-	-	C	69421983	G	C	69421983	3	2	842	1	0	0	0	0	1	0	0	0	650	1377	48	4	1501	4	ANKRD20A4	9	69421983	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		69421983	71791448	11	70217										
COMMD9	0	genome.wustl.edu	37	chr11	36300038	36300038	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	agcacttacacatgttctagGatgatctttgtcagcaggtt	9	8	3	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	11	36300038	36300038	G	A	SNP	COMMD9	ENST00000263401	human	ensembl	69_37n	-1	known	silent	c.306	p.I102	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442	137	0	0	75	34	31.19	-	-	-	A	36300038	G	A	36300038	2	1	842	1	0	0	0	0	0	0	0	1	3753	1164	41	2		2	COMMD9	11	36300038	Silent	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		36300038	98706478	12	70218										
TMPRSS4	0	genome.wustl.edu	37	chr11	117982545	117982545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	ggcaggtcagcatccagtacGacaaacagcacgtctgtgga	12	11	2	0			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	11	117982545	117982545	G	A	SNP	TMPRSS4	ENST00000437212	human	ensembl	69_37n	1	known	missense	c.673	p.D225N	0.063	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648	73	0	0	15	6	28.57	-	-	-	A	117982545	G	A	117982545	3	1	842	1	0	0	0	0	1	0	0	0	16344	1058	37	1	703	1	TMPRSS4	11	117982545	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09	81682507	117982545	17023971	13	70219										
PZP	0	genome.wustl.edu	37	chr12	9346694	9346694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	cggacaaaaagtttattaacCgagatactggtagtattgat	9	5	0	2			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	12	9346694	9346694	C	T	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	silent	c.1233	p.S411	0.001	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	136	0	0	98	17	14.78	-	-	-	T	9346694	C	T	9346694	2	4	842	1	0	0	0	0	0	0	0	1	12952	639	23	1		1	PZP	12	9346694	Silent	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09		9346694	124505201	14	70220										
PFKM	0	genome.wustl.edu	37	chr12	48538878	48538878	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	gggcgccaaggctatgaactGgatgtctgggaaaatcaaag	14	7	2	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	12	48538878	48538878	G	A	SNP	PFKM	ENST00000312352	human	ensembl	69_37n	1	known	nonsense	c.2057	p.W686*	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	161	0	0	73	25	25.51	-	-	-	A	48538878	G	A	48538878	4	1	842	1	0	0	0	0	0	1	0	0	11839	1357	47	4	2356	4	PFKM	12	48538878	Nonsense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09	39192184	48538878	85313017	15	70221										
FLRT2	0	genome.wustl.edu	37	chr14	86088051	86088051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	ctcttgggatcccggagggcGtaactgtactctacctccac	10	14	2	0			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	14	86088051	86088051	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	missense	c.193	p.V65I	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	103	0	0	40	17	29.82	-	-	-	A	86088051	G	A	86088051	3	1	842	1	0	0	0	0	1	0	0	0	5985	1145	40	1	195	1	FLRT2	14	86088051	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		86088051	21261489	16	70222										
CTCF	0	genome.wustl.edu	37	chr16	67645418	67645418	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	agatgtgtctgtctacgattTtgaggaagaacagcaggagg	14	5	2	3			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	16	67645418	67645418	T	C	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.683	p.F228S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	84	0	0	32	21	39.62	-	-	-	C	67645418	T	C	67645418	3	2	842	1	0	0	0	0	1	0	0	0	4032	1841	64	5	685	5	CTCF	16	67645418	Missense_Mutation	SNP	T	TCGA-E9-A1R0-01A-22D-A16D-09		67645418	22709335	17	70223										
OSBPL1A	0	genome.wustl.edu	37	chr18	21894248	21894248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	aaggctattcttaggaacccGgaagccatgaatggtgtcat	11	8	2	1			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	18	21894248	21894248	G	A	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	missense	c.934	p.R312W	0.997	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	88	0	0	50	7	12.28	-	-	-	A	21894248	G	A	21894248	3	1	842	1	0	0	0	0	1	0	0	0	11350	1115	39	1	1986	1	OSBPL1A	18	21894248	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		21894248	56183000	18	70224										
CYP4F11	0	genome.wustl.edu	37	chr19	16040359	16040359	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	acaacttaaagccctggggaTatgtggtcaccagctgggtc	12	10	1	0			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	19	16040359	16040359	T	C	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.251	p.Y84C	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	121	0	0	50	6	10.53	-	-	-	C	16040359	T	C	16040359	3	2	842	1	0	0	0	0	1	0	0	0	4217	1406	49	5	1367	5	CYP4F11	19	16040359	Missense_Mutation	SNP	T	TCGA-E9-A1R0-01A-22D-A16D-09		16040359	43088624	19	70225										
DOCK11	0	genome.wustl.edu	37	chrX	117785950	117785950	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	ataattgctgtaagccaactGatagctgatgtagcactaag	9	7	0	2			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	X	117785950	117785950	G	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.4605	p.L1535	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	89	0	0	73	24	24.74	-	-	-	C	117785950	G	C	117785950	2	2	842	1	0	0	0	0	0	0	0	1	4721	1277	45	2		2	DOCK11	23	117785950	Silent	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09		117785950	37484610	20	70226										
THOC2	0	genome.wustl.edu	37	chrX	122840715	122840715	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	tatacatacttacactaatgTcactaagaacattagatgcc	4	9	1	2			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	X	122840715	122840715	T	A	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.215	p.D72V	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	114	0	0	84	27	24.11	-	-	-	A	122840715	T	A	122840715	3	1	842	1	0	0	0	0	1	0	0	0	15960	1667	58	5	4710	5	THOC2	23	122840715	Missense_Mutation	SNP	T	TCGA-E9-A1R0-01A-22D-A16D-09	5054765	122840715	32429845	21	70227										
STAG2	0	genome.wustl.edu	37	chrX	123181291	123181291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	aagacaatatgaagcagaacGgaataaaatgattggaaaac	9	4	0	4			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	X	123181291	123181291	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	1	known	missense	c.755	p.R252Q	1.000	pfam_STAG,superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	79	0	0	52	14	21.21	-	-	-	A	123181291	G	A	123181291	3	1	842	1	0	0	0	0	1	0	0	0	15334	1116	39	1	781	1	STAG2	23	123181291	Missense_Mutation	SNP	G	TCGA-E9-A1R0-01A-22D-A16D-09	340576	123181291	32089269	22	70228										
LDOC1	0	genome.wustl.edu	37	chrX	140270877	140270877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.217391304347826	5	0.553235724720845	1.5	4	1.05882352941176	1	1	0	tcacctaggatggggctatcCatctcgatgtagggcaccac	11	12	2	0			TCGA-E9-A1R0-01A-22D-A16D-09	TCGA-E9-A1R0-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c09eaa03-c14c-4a96-a505-4d999e45270e	ff0a6768-52d3-43fb-a32f-af125579a86c	X	140270877	140270877	C	T	SNP	LDOC1	ENST00000370526	human	ensembl	69_37n	-1	known	missense	c.330	p.M110I	0.927	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195	113	0	0	35	11	23.91	-	-	-	T	140270877	C	T	140270877	3	4	842	1	0	0	0	0	1	0	0	0	8763	594	21	4	114	4	LDOC1	23	140270877	Missense_Mutation	SNP	C	TCGA-E9-A1R0-01A-22D-A16D-09	17089586	140270877	14999683	23	70229										
TNFRSF8	0	genome.wustl.edu	37	chr1	12175747	12175747	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	cccgtgcccgctgtgtccccTacccaatctgtgcagcagag	10	17	1	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	12175747	12175747	T	A	SNP	TNFRSF8	ENST00000263932	human	ensembl	69_37n	1	known	missense	c.907	p.Y303N	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_8	-	no_errors	TNFRSF8	HGNC	ENSG00000120949	44	0	0	29	16	35.56	-	-	-	A	12175747	T	A	12175747	3	1	843	1	0	0	0	0	1	0	0	0	16394	1522	53	5	937	5	TNFRSF8	1	12175747	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09		12175747	237074874	1	70230										
AADACL4	0	genome.wustl.edu	37	chr1	12704575	12704575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gccccaggaacatggctgtcCcctggctagtgctactcttg	11	14	1	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	12704575	12704575	C	T	SNP	AADACL4	ENST00000376221	human	ensembl	69_37n	1	known	missense	c.10	p.P4S	0.001	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518	97	0	0	24	59	71.08	-	-	-	T	12704575	C	T	12704575	3	4	843	1	0	0	0	0	1	0	0	0	13	623	22	4	12	4	AADACL4	1	12704575	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	528828	12704575	236546046	2	70231										
ZYG11B	0	genome.wustl.edu	37	chr1	53267568	53267568	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	aaatttactttgagtgcactTtggaacctcacagatgaatc	7	8	1	3			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	53267568	53267568	T	A	SNP	ZYG11B	ENST00000294353	human	ensembl	69_37n	1	known	silent	c.1563	p.L521	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378	85	0	0	34	24	41.38	-	-	-	A	53267568	T	A	53267568	2	1	843	1	0	0	0	0	0	0	0	1	18344	1828	64	5		5	ZYG11B	1	53267568	Silent	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09	40562993	53267568	195983053	3	70232										
NBPF11	0	genome.wustl.edu	37	chr1	146055349	146055349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tacggggtcccctcacctgaGctcctcagcttgcttcagct	9	16	3	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	146055349	146055349	G	A	SNP	NBPF11	ENST00000339388	human	ensembl	69_37n	-1	known	missense	c.274	p.L92F	0.060	NULL	pfam_NBPF_dom,superfamily_Secretoglobin	-	no_errors	NBPF11	HGNC	ENSG00000152042	11	0	0	13	6	31.58	-	-	-	A	146055349	G	A	146055349	3	1	843	1	0	0	0	0	1	0	0	0	10265	986	34	4		4	NBPF11	1	146055349	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	92787781	146055349	103195272	4	70233										
RPTN	0	genome.wustl.edu	37	chr1	152128042	152128042	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ccttgtctgtctgtctgaccAtagtgggaactttggccttg	11	10	3	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	152128042	152128042	A	G	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	silent	c.1533	p.Y511	0.023	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	312	0	0	209	252	54.66	-	-	-	G	152128042	A	G	152128042	2	3	843	1	0	0	0	0	0	0	0	1	13750	224	8	5		5	RPTN	1	152128042	Silent	SNP	A	TCGA-E9-A1R2-01A-11D-A14G-09	6072693	152128042	97122579	5	70234										
INSRR	0	genome.wustl.edu	37	chr1	156812803	156812803	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ggctctcccttaccacatggTgacacttgaaggctttcatg	9	12	2	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	156812803	156812803	T	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.3119	p.H1040L	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	32	0	0	27	9	24.32	-	-	-	A	156812803	T	A	156812803	3	1	843	1	0	0	0	0	1	0	0	0	7828	1696	59	5	797	5	INSRR	1	156812803	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09	4684761	156812803	92437818	6	70235										
KIFAP3	0	genome.wustl.edu	37	chr1	170007569	170007569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	attaatgttagcaacttcatCaatctgaaacaaagaggcag	7	7	3	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	170007569	170007569	C	T	SNP	KIFAP3	ENST00000361580	human	ensembl	69_37n	-1	known	missense	c.379	p.D127N	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945	54	0	0	36	14	28	-	-	-	T	170007569	C	T	170007569	3	4	843	1	0	0	0	0	1	0	0	0	8363	826	29	2	2063	2	KIFAP3	1	170007569	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	13194766	170007569	79243052	7	70236										
SLC5A6	0	genome.wustl.edu	37	chr2	27425725	27425725	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ggaaatataggccattcctaGacaaagcagcccatagccaa	8	11	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	27425725	27425725	G	C	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	missense	c.1231	p.L411V	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	49	0	0	27	14	34.15	-	-	-	C	27425725	G	C	27425725	3	2	843	1	0	0	0	0	1	0	0	0	14758	933	33	2	700	2	SLC5A6	2	27425725	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		27425725	215773648	8	70237										
SPAST	0	genome.wustl.edu	37	chr2	32361954	32361954	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tatttcctctagatgaagttGatagccttttgtgtgaaaga	9	5	1	5			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	32361954	32361954	G	T	SNP	SPAST	ENST00000315285	human	ensembl	69_37n	1	known	missense	c.1330	p.D444Y	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,pirsf_Spastin	pfam_ATPase_AAA_core,pfam_MIT,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase,pirsf_Spastin	-	no_errors	SPAST	HGNC	ENSG00000021574	96	0	0	72	22	23.4	-	-	-	T	32361954	G	T	32361954	3	4	843	1	0	0	0	0	1	0	0	0	15088	1290	45	2	1372	2	SPAST	2	32361954	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	4936229	32361954	210837419	9	70238										
NEB	0	genome.wustl.edu	37	chr2	152580858	152580858	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tacttatccttggtgtcttcCcagttctgcttgtataaaac	6	10	2	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	152580858	152580858	C	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	nonsense	c.528	p.W176*	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	89	0	0	63	25	28.41	-	-	-	T	152580858	C	T	152580858	4	4	843	1	0	0	0	0	0	1	0	0	10374	624	22	4	25858	4	NEB	2	152580858	Nonsense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	120218904	152580858	90618515	10	70239										
EPHA3	0	genome.wustl.edu	37	chr3	89521635	89521635	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ccatcaaaccttcttctggaCcaaagcaatgtggatatcac	6	12	4	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	89521635	89521635	C	G	SNP	EPHA3	ENST00000336596	human	ensembl	69_37n	1	known	missense	c.2712	p.D904E	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524	50	0	0	39	18	31.58	-	-	-	G	89521635	C	G	89521635	3	3	843	1	0	0	0	0	1	0	0	0	5205	506	18	4	2800	4	EPHA3	3	89521635	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09		89521635	108500795	11	70240										
TFG	0	genome.wustl.edu	37	chr3	100467337	100467337	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	cgcgtaaccgtcctccctttGgtcagggctatacccaacct	8	16	1	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	100467337	100467337	G	T	SNP	TFG	ENST00000240851	human	ensembl	69_37n	1	known	missense	c.1165	p.G389C	1.000	NULL	pfam_OPR_PB1,smart_OPR_PB1	-	no_errors	TFG	HGNC	ENSG00000114354	30	0	0	12	9	42.86	-	-	-	T	100467337	G	T	100467337	3	4	843	1	0	0	0	0	1	0	0	0	15901	1348	47	4	1191	4	TFG	3	100467337	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	10945702	100467337	97555093	12	70241										
PSMD2	0	genome.wustl.edu	37	chr3	184018176	184018176	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	agcctctcaaatttctgcgtCcacactatggcaaactgaag	7	12	2	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	184018176	184018176	C	G	SNP	PSMD2	ENST00000310118	human	ensembl	69_37n	1	known	missense	c.301	p.P101A	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166	35	0	0	31	14	31.11	-	-	-	G	184018176	C	G	184018176	3	3	843	1	0	0	0	0	1	0	0	0	12778	855	30	2	311	2	PSMD2	3	184018176	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	83550839	184018176	14004254	13	70242										
EXOSC9	0	genome.wustl.edu	37	chr4	122737590	122737590	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tttggaaccagacaagaatcCaaagaaaataaggtaacaaa	7	6	0	3			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	4	122737590	122737590	C	G	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	missense	c.1274	p.P425R	0.043	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	55	0	0	34	21	38.18	-	-	-	G	122737590	C	G	122737590	3	3	843	1	0	0	0	0	1	0	0	0	5358	594	21	4	1320	4	EXOSC9	4	122737590	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09		122737590	68416686	14	70243										
ITGA1	0	genome.wustl.edu	37	chr5	52240786	52240786	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ttttcagtcatatttttccaGcttaaatcttactataaggg	5	7	3	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	52240786	52240786	G	C	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	1	known	missense	c.3299	p.S1100T	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	79	0	0	35	15	30	-	-	-	C	52240786	G	C	52240786	3	2	843	1	0	0	0	0	1	0	0	0	7926	971	34	4	3405	4	ITGA1	5	52240786	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		52240786	128674474	15	70244										
FBXL17	0	genome.wustl.edu	37	chr5	107216824	107216824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ttggtctgtgatttctttacAccatccgacatccacagtct	6	12	3	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	107216824	107216824	A	G	SNP	FBXL17	ENST00000542267	human	ensembl	69_37n	-1	known	missense	c.1879	p.C627R	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL17	HGNC	ENSG00000145743	68	0	0	29	24	44.44	-	-	-	G	107216824	A	G	107216824	3	3	843	1	0	0	0	0	1	0	0	0	5759	159	6	5	234	5	FBXL17	5	107216824	Missense_Mutation	SNP	A	TCGA-E9-A1R2-01A-11D-A14G-09	54976038	107216824	73698436	16	70245										
PCDHGA7	0	genome.wustl.edu	37	chr5	140764619	140764619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gctggcgctcaggctgcggcGctggcacaagtcacgcctgc	15	15	2	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	140764619	140764619	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	missense	c.2153	p.R718H	0.979	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	34	0	0	32	17	34.69	-	-	-	A	140764619	G	A	140764619	3	1	843	1	0	0	0	0	1	0	0	0	11632	1087	38	1	2155	1	PCDHGA7	5	140764619	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	33547795	140764619	40150641	17	70246										
GFPT2	0	genome.wustl.edu	37	chr5	179745913	179745913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	agccactgcggcgatgtcatCgtcctccaggaagatgaccc	11	14	1	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	179745913	179745913	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.838	p.D280N	1.000	tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	26	0	0	8	16	66.67	-	-	-	T	179745913	C	T	179745913	3	4	843	1	0	0	0	0	1	0	0	0	6398	884	31	1	1250	1	GFPT2	5	179745913	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	38981294	179745913	1169347	18	70247										
ASAP1	0	genome.wustl.edu	37	chr8	131226804	131226804	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	acatatgaaatgtcttaccaGatttttcagcagtgtggaca	8	7	2	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	8	131226804	131226804	G	C	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.403	p.L135V	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	78	0	0	88	22	20	-	-	-	C	131226804	G	C	131226804	3	2	843	1	0	0	0	0	1	0	0	0	1014	933	33	2	3090	2	ASAP1	8	131226804	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		131226804	15137218	19	70248										
GLDC	0	genome.wustl.edu	37	chr9	6605176	6605176	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	agttccgtaaagtcttccacCttcccctccgtgtctgggta	8	14	2	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	6605176	6605176	C	G	SNP	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	missense	c.816	p.K272N	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	67	0	0	20	17	45.95	-	-	-	G	6605176	C	G	6605176	3	3	843	1	0	0	0	0	1	0	0	0	6485	680	24	4	2326	4	GLDC	9	6605176	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09		6605176	134608255	20	70249										
FAM75A6	0	genome.wustl.edu	37	chr9	43625257	43625257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ctttgatggcagtagctggaCgccttcatcctgatgggtgt	13	9	1	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	43625257	43625257	C	T	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.3430	p.V1144I	0.000	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	226	0	0	90	66	42.31	-	-	-	T	43625257	C	T	43625257	3	4	843	1	0	0	0	0	1	0	0	0	5667	536	19	1	605	1	FAM75A6	9	43625257	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	37020081	43625257	97588174	21	70250										
TLR4	0	genome.wustl.edu	37	chr9	120475050	120475050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	agacctgtccctgaaccctaTgaactttatccaaccaggtg	7	13	0	3			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	120475050	120475050	T	C	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.644	p.M215T	0.345	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	42	0	0	25	16	39.02	-	-	-	C	120475050	T	C	120475050	3	2	843	1	0	0	0	0	1	0	0	0	16048	1464	51	5	654	5	TLR4	9	120475050	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09	76849793	120475050	20738381	22	70251										
TLR4	0	genome.wustl.edu	37	chr9	120475844	120475844	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tcgaagtcttgaaaatggctGgcaattctttccaggaaaac	9	8	2	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	120475844	120475844	G	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.1438	p.G480C	1.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	28	0	0	21	12	36.36	-	-	-	T	120475844	G	T	120475844	3	4	843	1	0	0	0	0	1	0	0	0	16048	1348	47	4	1448	4	TLR4	9	120475844	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	794	120475844	20737587	23	70252										
LCN2	0	genome.wustl.edu	37	chr9	130913971	130913971	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gttccaggttgccagcccggCgagttcacgctgggcaacat	13	13	1	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	130913971	130913971	C	G	SNP	LCN2	ENST00000372998	human	ensembl	69_37n	1	known	silent	c.336	p.G112	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase,prints_PstgldnD_synth,prints_Lipocalin,prints_A1-microglobln	-	no_errors	LCN2	HGNC	ENSG00000148346	35	0	0	22	7	24.14	-	-	-	G	130913971	C	G	130913971	2	3	843	1	0	0	0	0	0	0	0	1	8738	755	27	3		3	LCN2	9	130913971	Silent	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	10438127	130913971	10299460	24	70253										
SH3GLB2	0	genome.wustl.edu	37	chr9	131772130	131772130	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tgagacttgacgaactcgtgGaggcagcgcaggtggttcac	15	9	1	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	131772130	131772130	G	T	SNP	SH3GLB2	ENST00000372554	human	ensembl	69_37n	-1	known	silent	c.771	p.L257	0.982	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341	29	0	0	27	14	34.15	-	-	-	T	131772130	G	T	131772130	2	4	843	1	0	0	0	0	0	0	0	1	14343	1161	41	2		2	SH3GLB2	9	131772130	Silent	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	858159	131772130	9441301	25	70254										
ITIH5	0	genome.wustl.edu	37	chr10	7605192	7605192	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ctgctcttccccgttgtaaaTcttcctttgcttccagacca	5	15	2	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	10	7605192	7605192	T	A	SNP	ITIH5	ENST00000256861	human	ensembl	69_37n	-1	known	missense	c.2683	p.I895F	1.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	70	0	0	53	22	29.33	-	-	-	A	7605192	T	A	7605192	3	1	843	1	0	0	0	0	1	0	0	0	7961	1435	50	5	191	5	ITIH5	10	7605192	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09		7605192	127929555	26	70255										
SCN2B	0	genome.wustl.edu	37	chr11	118038933	118038933	+	Frame_Shift_Del	DEL	G	G	-													0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	accgacacatcgtacttgctGgggttccctgagaactccac							TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	11	118038933	118038933	G	-	DEL	SCN2B	ENST00000278947	human	ensembl	69_37n	-1	known	frame_shift_del	c.315	p.S106fs	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	SCN2B	HGNC	ENSG00000149575	45	0	0	12	9	42.86	-	-	-	-	118038933	G	-	118038933	7	5	843	1	0	1	0	1	0	0	0	0	14005	1335	47	0	340	0	SCN2B	11	118038933	Frame_Shift_Del	DEL	G	TCGA-E9-A1R2-01A-11D-A14G-09		118038933	16967583	27	70256										
VPS11	0	genome.wustl.edu	37	chr11	118948974	118948974	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gagtgaagtgcagccagactCaccccaggggatctacgaca	12	12	2	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	11	118948974	118948974	C	T	SNP	VPS11	ENST00000300793	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	VPS11	HGNC	ENSG00000160695	30	0	0	20	13	39.39	-	-	-	T	118948974	C	T	118948974	1	4	843	0	1	0	0	0	0	0	0	0	17285	838	29	2		2	VPS11	11	118948974	RNA	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	910041	118948974	16057542	28	70257										
KCNA6	0	genome.wustl.edu	37	chr12	4920003	4920003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ttacagaccccttctttctgGtggagacgctgtgcattgtc	10	11	2	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	4920003	4920003	G	T	SNP	KCNA6	ENST00000280684	human	ensembl	69_37n	1	known	missense	c.796	p.V266L	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	20	0	0	21	17	44.74	-	-	-	T	4920003	G	T	4920003	3	4	843	1	0	0	0	0	1	0	0	0	8061	1261	44	4	798	4	KCNA6	12	4920003	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		4920003	128931892	29	70258										
AGAP2	0	genome.wustl.edu	37	chr12	58128453	58128453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	cttcccactcctggcatcgcCcagcacaccctgagggcaag	9	18	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	58128453	58128453	C	T	SNP	AGAP2	ENST00000547588	human	ensembl	69_37n	-1	known	missense	c.1237	p.G413S	1.000	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	38	0	0	23	10	30.3	-	-	-	T	58128453	C	T	58128453	3	4	843	1	0	0	0	0	1	0	0	0	368	623	22	4	2409	4	AGAP2	12	58128453	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	53208450	58128453	75723442	30	70259										
TXNRD1	0	genome.wustl.edu	37	chr12	104713335	104713335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gaccacgttacttgggcatcCctggtgacaaagaatactgc	10	11	0	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	104713335	104713335	C	T	SNP	TXNRD1	ENST00000429002	human	ensembl	69_37n	1	known	missense	c.961	p.P321S	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	38	0	0	19	14	42.42	-	-	-	T	104713335	C	T	104713335	3	4	843	1	0	0	0	0	1	0	0	0	16904	623	22	4	1009	4	TXNRD1	12	104713335	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	46584882	104713335	29138560	31	70260										
STON2	0	genome.wustl.edu	37	chr14	81743745	81743747	+	In_Frame_Del	DEL	GTG	GTG	-													0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	catggagcttgatccactttGtggtggtggtgggcatgatg							TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	14	81743745	81743747	GTG	-	DEL	STON2	ENST00000267540	human	ensembl	69_37n	-1	known	in_frame_del	c.1910_1908	p.T637in_frame_del	0.994:0.996:0.998	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	52	0	0	16	2	11.11	-	-	-	-	81743747	GTG	-	81743745	7	5	843	1	0	1	0	1	0	0	0	0	15409	1377	48	0	813	0	STON2	14	81743745	In_Frame_Del	DEL	GTG	TCGA-E9-A1R2-01A-11D-A14G-09		81743745	25605795	32	70261										
ADAL	0	genome.wustl.edu	37	chr15	43644127	43644127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	atggaatcacctgaagcccaGagtgttacatatttaagcta	8	8	1	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	15	43644127	43644127	G	C	SNP	ADAL	ENST00000422466	human	ensembl	69_37n	1	known	missense	c.1052	p.R351T	0.991	NULL	pfam_A/AMP_deaminase_dom	-	no_errors	ADAL	HGNC	ENSG00000168803	45	0	0	31	14	31.11	-	-	-	C	43644127	G	C	43644127	3	2	843	1	0	0	0	0	1	0	0	0	233	942	33	2	1122	2	ADAL	15	43644127	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		43644127	58887265	33	70262										
FBN1	0	genome.wustl.edu	37	chr15	48766788	48766788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	acatttgaagcttcctgctgTattggtacatacagcatgtt	8	8	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	15	48766788	48766788	T	C	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.4024	p.T1342A	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	91	0	0	56	34	37.78	-	-	-	C	48766788	T	C	48766788	3	2	843	1	0	0	0	0	1	0	0	0	5748	1638	57	5	4727	5	FBN1	15	48766788	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09	5122661	48766788	53764604	34	70263										
ADCY7	0	genome.wustl.edu	37	chr16	50328657	50328657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ttggcaagttcgaccagatcGccaaggtgagcccgctggcc	13	13	0	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	16	50328657	50328657	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	1	known	missense	c.943	p.A315T	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	33	0	0	18	10	35.71	-	-	-	A	50328657	G	A	50328657	3	1	843	1	0	0	0	0	1	0	0	0	299	1087	38	1	965	1	ADCY7	16	50328657	Missense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09		50328657	40026096	35	70264										
PTRF	0	genome.wustl.edu	37	chr17	40557214	40557214	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gcgccgcaggccgctgcgctTgatacgctctgcgcgggact	15	15	1	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	17	40557214	40557214	T	A	SNP	PTRF	ENST00000357037	human	ensembl	69_37n	-1	known	nonsense	c.664	p.K222*	1.000	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469	32	0	0	38	22	36.67	-	-	-	A	40557214	T	A	40557214	4	1	843	1	0	0	0	0	0	1	0	0	12898	1821	63	5	512	5	PTRF	17	40557214	Nonsense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09		40557214	40637996	36	70265										
MED16	0	genome.wustl.edu	37	chr19	875294	875295	+	Frame_Shift_Del	DEL	TT	TT	-													0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tcagccggtcgccggggctcTtgtcaggcgtgttgagaaag							TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	875294	875295	TT	-	DEL	MED16	ENST00000325464	human	ensembl	69_37n	-1	known	frame_shift_del	c.1721_1720	p.K574fs	1.000:1.000	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	34	0	0	8	9	47.37	-	-	-	-	875295	TT	-	875294	7	5	843	1	0	1	0	1	0	0	0	0	9505	1609	56	0	940	0	MED16	19	875294	Frame_Shift_Del	DEL	TT	TCGA-E9-A1R2-01A-11D-A14G-09		875294	58253689	37	70266										
MPND	0	genome.wustl.edu	37	chr19	4354359	4354359	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ggaagtaacatcctttgcagCcatcaacaagttccagccgt	8	12	1	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	4354359	4354359	C	A	SNP	MPND	ENST00000262966	human	ensembl	69_37n	1	known	missense	c.788	p.A263D	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1	-	no_errors	MPND	HGNC	ENSG00000008382	48	0	0	34	19	35.85	-	-	-	A	4354359	C	A	4354359	3	1	843	1	0	0	0	0	1	0	0	0	9803	739	26	4	810	4	MPND	19	4354359	Missense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	3479065	4354359	54774624	38	70267										
ZNF560	0	genome.wustl.edu	37	chr19	9577765	9577765	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	cttatctccagtgtgtcttcGtaaatgtttagtaagatctg	8	7	3	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	9577765	9577765	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	nonsense	c.1858	p.R620*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	79	0	0	59	22	27.16	-	-	-	A	9577765	G	A	9577765	4	1	843	1	0	0	0	0	0	1	0	0	18087	1153	40	1	518	1	ZNF560	19	9577765	Nonsense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	5223406	9577765	49551218	39	70268										
ZNF799	0	genome.wustl.edu	37	chr19	12501549	12501550	+	Frame_Shift_Del	DEL	TG	TG	-													0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ctcatagggtttctctctcaTgtgaattctttcatgtcgta							TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	12501549	12501550	TG	-	DEL	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	frame_shift_del	c.1663_1662	p.M555fs	0.984:0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	117	0	0	84	13	13.4	-	-	-	-	12501550	TG	-	12501549	7	5	843	1	0	1	0	1	0	0	0	0	18259	1464	51	0	272	0	ZNF799	19	12501549	Frame_Shift_Del	DEL	TG	TCGA-E9-A1R2-01A-11D-A14G-09	2923784	12501549	46627434	40	70269										
WIZ	0	genome.wustl.edu	37	chr19	15536452	15536452	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gtgtcgatgggcgaaccattGacggaccactcggtcacacc	12	13	1	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	15536452	15536452	G	C	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	silent	c.3780	p.V1260	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	19	0	0	16	5	23.81	-	-	-	C	15536452	G	C	15536452	2	2	843	1	0	0	0	0	0	0	0	1	17472	1277	45	2		2	WIZ	19	15536452	Silent	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	3034903	15536452	43592531	41	70270										
SLC5A5	0	genome.wustl.edu	37	chr19	17988649	17988649	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	gtgcagcgctacgtggcttgCcgcacagagaagcaggccaa	14	12	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	17988649	17988649	C	T	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	silent	c.816	p.C272	0.730	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	50	0	0	45	24	34.78	-	-	-	T	17988649	C	T	17988649	2	4	843	1	0	0	0	0	0	0	0	1	14757	747	26	4		4	SLC5A5	19	17988649	Silent	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	2452197	17988649	41140334	42	70271										
AKT2	0	genome.wustl.edu	37	chr19	40741973	40741973	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	atgaccacacccagcccccaCcagtccacggcccggccata	7	21	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	40741973	40741973	C	T	SNP	AKT2	ENST00000392038	human	ensembl	69_37n	-1	known	nonsense	c.999	p.W333*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT2	HGNC	ENSG00000105221	51	0	0	36	18	33.33	-	-	-	T	40741973	C	T	40741973	4	4	843	1	0	0	0	0	0	1	0	0	480	508	18	4	462	4	AKT2	19	40741973	Nonsense_Mutation	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09	22753324	40741973	18387010	43	70272										
PRX	0	genome.wustl.edu	37	chr19	40902282	40902282	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ttcatctctgggactttcggGagctgcacttccgggaggtg	14	10	2	0			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	40902282	40902282	G	T	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.1977	p.L659	0.024	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	61	0	0	31	12	27.91	-	-	-	T	40902282	G	T	40902282	2	4	843	1	0	0	0	0	0	0	0	1	12722	1161	41	2		2	PRX	19	40902282	Silent	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	160309	40902282	18226701	44	70273										
SSTR4	0	genome.wustl.edu	37	chr20	23016840	23016840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	atcgtgggcaagatgcgcgcCgtggccctgcgcgctggctg	17	13	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	20	23016840	23016840	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	1	known	silent	c.720	p.A240	0.682	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	56	0	0	32	22	40.74	-	-	-	T	23016840	C	T	23016840	2	4	843	1	0	0	0	0	0	0	0	1	15291	639	23	1		1	SSTR4	20	23016840	Silent	SNP	C	TCGA-E9-A1R2-01A-11D-A14G-09		23016840	40008680	45	70274										
MXRA5	0	genome.wustl.edu	37	chrX	3239601	3239601	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	ggattccaggttggagttccTggaaagcctacaggagagga	15	7	0	1			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	3239601	3239601	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.4125	p.P1375	0.001	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	36	0	0	18	4	18.18	-	-	-	C	3239601	T	C	3239601	2	2	843	1	0	0	0	0	0	0	0	1	10075	1567	55	5		5	MXRA5	23	3239601	Silent	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09		3239601	152030959	46	70275										
FAM47B	0	genome.wustl.edu	37	chrX	34961414	34961414	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	tgctgaaacagctggatcccGagaggaagctggaggacgct	15	9	0	2			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	34961414	34961414	G	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	nonsense	c.466	p.E156*	0.116	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	53	0	0	34	16	32	-	-	-	T	34961414	G	T	34961414	4	4	843	1	0	0	0	0	0	1	0	0	5616	1059	37	3	468	3	FAM47B	23	34961414	Nonsense_Mutation	SNP	G	TCGA-E9-A1R2-01A-11D-A14G-09	31721813	34961414	120309146	47	70276										
RBM3	0	genome.wustl.edu	37	chrX	48434030	48434030	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.125	6	0.259706184775636	1.94275862068966	3.23793103448276	1.07931034482759	0.592074592074592	1	0	caacccagagcatgcttcagTtgccatgagagccatgaacg	10	12	1	3			TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	48434030	48434030	T	A	SNP	RBM3	ENST00000376755	human	ensembl	69_37n	1	known	missense	c.185	p.V62D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM3	HGNC	ENSG00000102317	51	0	0	38	25	39.68	-	-	-	A	48434030	T	A	48434030	3	1	843	1	0	0	0	0	1	0	0	0	13212	1725	60	5	191	5	RBM3	23	48434030	Missense_Mutation	SNP	T	TCGA-E9-A1R2-01A-11D-A14G-09	13472616	48434030	106836530	48	70277										
GBP3	0	genome.wustl.edu	37	chr1	89477458	89477458	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tcttttgaaacagatggtccAcatccttgaaagagttcttc	7	9	2	4			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	1	89477458	89477458	A	T	SNP	GBP3	ENST00000370481	human	ensembl	69_37n	-1	known	missense	c.1121	p.V374E	0.001	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP3	HGNC	ENSG00000117226	21	0	0	6	7	53.85	-	-	-	T	89477458	A	T	89477458	3	4	844	1	0	0	0	0	1	0	0	0	6325	159	6	5	686	5	GBP3	1	89477458	Missense_Mutation	SNP	A	TCGA-E9-A1R3-01A-31D-A14K-09		89477458	159773163	1	70278										
RGPD3	0	genome.wustl.edu	37	chr2	107029550	107029550	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ttttacccaccttgagcaacCgcagcaagttttcccttttc	5	14	0	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	107029550	107029550	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.5256	p.A1752	0.997	smart_GRIP,pfscan_GRIP	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	136	0	0	105	37	26.06	-	-	-	T	107029550	C	T	107029550	2	4	844	1	0	0	0	0	0	0	0	1	13370	639	23	1		1	RGPD3	2	107029550	Silent	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		107029550	136169823	2	70279										
MYO7B	0	genome.wustl.edu	37	chr2	128364902	128364902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	gtgcaggggatacctggtgcGccagcaagtccaggccaaga	15	11	0	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	128364902	128364902	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.2546	p.R849H	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	46	0	0	27	5	15.62	-	-	-	A	128364902	G	A	128364902	3	1	844	1	0	0	0	0	1	0	0	0	10155	1087	38	1	2624	1	MYO7B	2	128364902	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09	21335352	128364902	114834471	3	70280										
SF3B1	0	genome.wustl.edu	37	chr2	198267481	198267481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	aaaagctctagctgttgtgtTacggacatactcatccatgt	8	9	2	0			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	198267481	198267481	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.1876	p.N626D	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	63	0	0	39	15	27.27	-	-	-	C	198267481	T	C	198267481	3	2	844	1	0	0	0	0	1	0	0	0	14237	1754	61	5	2086	5	SF3B1	2	198267481	Missense_Mutation	SNP	T	TCGA-E9-A1R3-01A-31D-A14K-09	69902579	198267481	44931892	4	70281										
ADAM23	0	genome.wustl.edu	37	chr2	207406859	207406859	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tcaacctgcaatggacttcaGtaagtgggaatctcattggc	10	9	3	0			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	207406859	207406859	G	A	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	1	known	splice_site	c.656+1	e5+1	1.000	-	-	-	no_errors	ADAM23	HGNC	ENSG00000114948	51	0	0	27	13	32.5	-	-	-	A	207406859	G	A	207406859	5	1	844	1	0	0	0	0	0	0	1	0	245	1043	36	4	675	4	ADAM23	2	207406859	Splice_Site	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09	9139378	207406859	35792514	5	70282										
RBM44	0	genome.wustl.edu	37	chr2	238728887	238728887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tgtcagaagataatgcagagAgccataaaagcagagctgca	11	7	1	4			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	238728887	238728887	A	C	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.1809	p.R603S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	71	0	0	42	9	17.65	-	-	-	C	238728887	A	C	238728887	3	2	844	1	0	0	0	0	1	0	0	0	13221	301	11	5	1823	5	RBM44	2	238728887	Missense_Mutation	SNP	A	TCGA-E9-A1R3-01A-31D-A14K-09	31322028	238728887	4470486	6	70283										
DNASE1L3	0	genome.wustl.edu	37	chr3	58178422	58178422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	agacccttgggtctaggagcGtttgctctttgttttcttcc	10	10	3	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	3	58178422	58178422	G	A	SNP	DNASE1L3	ENST00000318316	human	ensembl	69_37n	-1	known	missense	c.910	p.R304C	0.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L3	HGNC	ENSG00000163687	79	0	0	58	21	26.58	-	-	-	A	58178422	G	A	58178422	3	1	844	1	0	0	0	0	1	0	0	0	4698	1145	40	1	11	1	DNASE1L3	3	58178422	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09		58178422	139844008	7	70284										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	49	0	0	38	16	29.63	-	-	-	G	178952085	A	G	178952085	3	3	844	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A1R3-01A-31D-A14K-09	120773663	178952085	19070345	8	70285										
ELOVL6	0	genome.wustl.edu	37	chr4	111026713	111026713	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tcctcagttcaaactttgctCgtttattcattaggtgccga	7	10	3	0			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	4	111026713	111026713	C	G	SNP	ELOVL6	ENST00000394607	human	ensembl	69_37n	-1	known	missense	c.161	p.R54P	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL6	HGNC	ENSG00000170522	48	0	0	27	4	12.5	-	-	-	G	111026713	C	G	111026713	3	3	844	1	0	0	0	0	1	0	0	0	5115	884	31	3	648	3	ELOVL6	4	111026713	Missense_Mutation	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		111026713	80127563	9	70286										
TARS	0	genome.wustl.edu	37	chr5	33457372	33457372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ttgttttcagaattcctccaCgtactgggaaggcaaagcag	10	9	1	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	5	33457372	33457372	C	T	SNP	TARS	ENST00000265112	human	ensembl	69_37n	1	known	missense	c.848	p.T283M	1.000	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS	HGNC	ENSG00000113407	87	0	0	63	24	27.59	-	-	-	T	33457372	C	T	33457372	3	4	844	1	0	0	0	0	1	0	0	0	15651	536	19	1	882	1	TARS	5	33457372	Missense_Mutation	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		33457372	147457888	10	70287										
C6orf62	0	genome.wustl.edu	37	chr6	24709014	24709017	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	aagctgcttacctgcaagtgCtgtctgtcaatgaagagaaa							TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	6	24709014	24709017	CTGT	-	DEL	C6orf62	ENST00000378119	human	ensembl	69_37n	-1	known	frame_shift_del	c.555_552	p.R184fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308	77	0	0	53	28	34.57	-	-	-	-	24709017	CTGT	-	24709014	7	5	844	1	0	1	0	1	0	0	0	0	2390	796	28	0	142	0	C6orf62	6	24709014	Frame_Shift_Del	DEL	CTGT	TCGA-E9-A1R3-01A-31D-A14K-09		24709014	146406053	11	70288										
EYA4	0	genome.wustl.edu	37	chr6	133783605	133783605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	acaggacagccctacagcttGcccacttacggtatttcaca	7	14	1	0			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	6	133783605	133783605	G	T	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	missense	c.570	p.L190F	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	127	0	0	104	13	11.11	-	-	-	T	133783605	G	T	133783605	3	4	844	1	0	0	0	0	1	0	0	0	5368	1310	46	4	596	4	EYA4	6	133783605	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09	109074591	133783605	37331462	12	70289										
FERD3L	0	genome.wustl.edu	37	chr7	19184779	19184780	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	cttctccgtccccctggtccINSacttcgcactcctcttcttc							TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	7	19184779	19184780	-	A	INS	FERD3L	ENST00000275461	human	ensembl	69_37n	-1	known	frame_shift_ins	c.207_206	p.D70fs	0.001:0.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FERD3L	HGNC	ENSG00000146618	21	0	0	27	14	34.15	-	-	-	A	19184780	-	A	19184779	7	5	844	1	0	1	1	0	0	0	0	0	5862	581	21	0	297	0	FERD3L	7	19184779	Frame_Shift_Ins	INS	-	TCGA-E9-A1R3-01A-31D-A14K-09		19184779	139953884	13	70290										
IKBKAP	0	genome.wustl.edu	37	chr9	111655314	111655314	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	aacttcagagcttcgttataCaagtttttatcttttatcaa	4	7	3	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	9	111655314	111655314	C	G	SNP	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	missense	c.2910	p.L970F	0.995	pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	99	0	0	58	9	13.43	-	-	-	G	111655314	C	G	111655314	3	3	844	1	0	0	0	0	1	0	0	0	7664	477	17	4	1132	4	IKBKAP	9	111655314	Missense_Mutation	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		111655314	29558117	14	70291										
ABCA2	0	genome.wustl.edu	37	chr9	139905720	139905720	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	aggttgtagttggggaaaatGaggaagcagcttttcaggta	15	3	1	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	9	139905720	139905720	G	A	SNP	ABCA2	ENST00000479446	human	ensembl	69_37n	-1	known	missense	c.3890	p.S1297L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA2	HGNC	ENSG00000107331	50	0	0	33	6	15.38	-	-	-	A	139905720	G	A	139905720	3	1	844	1	0	0	0	0	1	0	0	0	32	1277	45	2	1517	2	ABCA2	9	139905720	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09	28250406	139905720	1307711	15	70292										
OPCML	0	genome.wustl.edu	37	chr11	132527109	132527109	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tactgggttggtgtattgacCaggatgatcacacgagggtc	14	7	1	2			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	11	132527109	132527109	C	A	SNP	OPCML	ENST00000541867	human	ensembl	69_37n	-1	known	silent	c.273	p.L91	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	OPCML	HGNC	ENSG00000183715	94	0	0	90	16	15.09	-	-	-	A	132527109	C	A	132527109	2	1	844	1	0	0	0	0	0	0	0	1	10947	581	21	4		4	OPCML	11	132527109	Silent	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		132527109	2479407	16	70293										
RAB21	0	genome.wustl.edu	37	chr12	72149064	72149064	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	cgacaagcacatcaccactcTgcaggtgcggacctcgggga	12	14	2	0			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	12	72149064	72149064	T	C	SNP	RAB21	ENST00000261263	human	ensembl	69_37n	1	known	missense	c.155	p.L52P	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB21	HGNC	ENSG00000080371	22	0	0	12	5	29.41	-	-	-	C	72149064	T	C	72149064	3	2	844	1	0	0	0	0	1	0	0	0	12991	1580	55	5	157	5	RAB21	12	72149064	Missense_Mutation	SNP	T	TCGA-E9-A1R3-01A-31D-A14K-09		72149064	61702831	17	70294										
TRPM1	0	genome.wustl.edu	37	chr15	31338429	31338429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ccattcccagaagtttaagaGctttaggctgcatggtgaaa	10	8	0	3			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	15	31338429	31338429	G	T	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.1823	p.A608D	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	42	0	0	30	4	11.76	-	-	-	T	31338429	G	T	31338429	3	4	844	1	0	0	0	0	1	0	0	0	16681	971	34	4	3157	4	TRPM1	15	31338429	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09		31338429	71192963	18	70295										
RHBDF1	0	genome.wustl.edu	37	chr16	109808	109808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ggttggtgtggttcccagcgCtgtttttggtgcagatctgg	16	7	1	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	16	109808	109808	C	T	SNP	RHBDF1	ENST00000262316	human	ensembl	69_37n	-1	known	missense	c.1739	p.S580N	0.998	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384	123	1	0.81	153	74	32.6	-	-	-	T	109808	C	T	109808	3	4	844	1	0	0	0	0	1	0	0	0	13403	797	28	4	848	4	RHBDF1	16	109808	Missense_Mutation	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		109808	90244945	19	70296										
RBBP6	0	genome.wustl.edu	37	chr16	24560353	24560353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	tacacattgcttttacctttAtaatgtagcagtgaagtaaa	6	6	0	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	16	24560353	24560353	A	G	SNP	RBBP6	ENST00000452655	human	ensembl	69_37n	1	novel	silent	c.354	p.L118	0.993	NULL	pfam_DWNN_domain	-	no_errors	RBBP6	HGNC	ENSG00000122257	113	0	0	150	18	10.71	-	-	-	G	24560353	A	G	24560353	2	3	844	1	0	0	0	0	0	0	0	1	13186	446	16	5		5	RBBP6	16	24560353	Silent	SNP	A	TCGA-E9-A1R3-01A-31D-A14K-09	24450545	24560353	65794400	20	70297										
DHX40	0	genome.wustl.edu	37	chr17	57652830	57652830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	gtgttatggatcaatgacaaCaggtaatttctcattagaat	8	5	2	2			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	17	57652830	57652830	C	T	SNP	DHX40	ENST00000251241	human	ensembl	69_37n	1	known	missense	c.971	p.T324I	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406	102	0	0	68	18	20.93	-	-	-	T	57652830	C	T	57652830	3	4	844	1	0	0	0	0	1	0	0	0	4548	478	17	4	997	4	DHX40	17	57652830	Missense_Mutation	SNP	C	TCGA-E9-A1R3-01A-31D-A14K-09		57652830	23542380	21	70298										
MUC16	0	genome.wustl.edu	37	chr19	9068688	9068688	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ccagtgtaggggtgggtactGaggtcacagaaacaagagag	16	6	1	3			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	9068688	9068688	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.18758	p.S6253L	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	67	0	0	58	9	13.24	-	-	-	A	9068688	G	A	9068688	3	1	844	1	0	0	0	0	1	0	0	0	10045	1294	45	2	25093	2	MUC16	19	9068688	Missense_Mutation	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09		9068688	50060295	22	70299										
ZNF217	0	genome.wustl.edu	37	chr20	52192684	52192684	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	ccattgatgttactgctgccGagggtgggctgagaaggagc	16	8	0	2			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	20	52192684	52192684	G	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	silent	c.2619	p.L873	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	31	0	0	22	9	29.03	-	-	-	A	52192684	G	A	52192684	2	1	844	1	0	0	0	0	0	0	0	1	17868	1045	37	1		1	ZNF217	20	52192684	Silent	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09		52192684	10832836	23	70300										
PJA1	0	genome.wustl.edu	37	chrX	68382137	68382137	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.884573867541399	1.05926860025221	0	1.37704918032787	0.333333333333333	0.930327025915261	0	gggtactttggctcgggataGccacttgaactctcgcctct	11	12	2	1			TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	X	68382137	68382137	G	C	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	silent	c.945	p.G315	0.003	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	43	0	0	28	18	39.13	-	-	-	C	68382137	G	C	68382137	2	2	844	1	0	0	0	0	0	0	0	1	12035	958	34	4		4	PJA1	23	68382137	Silent	SNP	G	TCGA-E9-A1R3-01A-31D-A14K-09		68382137	86888423	24	70301										
NBL1	0	genome.wustl.edu	37	chr1	19983527	19983527	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cccagcccggcacccaccctCacccccatccccacccccat	3	28	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	19983527	19983527	C	T	SNP	NBL1	ENST00000289749	human	ensembl	69_37n	1	known	missense	c.556	p.H186Y	1.000	NULL	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C	-	no_errors	NBL1	HGNC	ENSG00000158747	12	0	0	1	5	83.33	-	-	-	T	19983527	C	T	19983527	3	4	845	1	0	0	0	0	1	0	0	0	10262	826	29	2	570	2	NBL1	1	19983527	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		19983527	229267094	1	70302										
HNRNPR	0	genome.wustl.edu	37	chr1	23648158	23648158	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gaatttcatagctgtcacacTgcaataagaaaagaaccaga	7	8	2	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	23648158	23648158	T	C	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	splice_site	c.676-2	e6-2	1.000	-	-	-	no_errors	HNRNPR	HGNC	ENSG00000125944	81	0	0	54	9	14.29	-	-	-	C	23648158	T	C	23648158	5	2	845	1	0	0	0	0	0	0	1	0	7323	1594	55	5	1256	5	HNRNPR	1	23648158	Splice_Site	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09	3664631	23648158	225602463	2	70303										
RHD	0	genome.wustl.edu	37	chr1	25627521	25627521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cctggtgcctgccaaagcctCtacccgagggaacggaggat	13	13	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	25627521	25627521	C	G	SNP	RHD	ENST00000328664	human	ensembl	69_37n	1	known	missense	c.571	p.L191V	0.001	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010	77	0	0	31	16	34.04	-	-	-	G	25627521	C	G	25627521	3	3	845	1	0	0	0	0	1	0	0	0	13411	912	32	2	585	2	RHD	1	25627521	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	1979363	25627521	223623100	3	70304										
PTPRC	0	genome.wustl.edu	37	chr1	198668702	198668702	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tcctaccttaggtgtttcatCagtacagacgcctcaccttc	6	14	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	198668702	198668702	C	T	SNP	PTPRC	ENST00000367376	human	ensembl	69_37n	1	known	missense	c.308	p.S103L	0.000	pirsf_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	65	0	0	52	6	10.34	-	-	-	T	198668702	C	T	198668702	3	4	845	1	0	0	0	0	1	0	0	0	12880	838	29	2	327	2	PTPRC	1	198668702	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	173041181	198668702	50581919	4	70305										
KDM5B	0	genome.wustl.edu	37	chr1	202736181	202736181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ctgtggtcaggtttggcttcTgcaaacactagaaataacaa	9	8	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	202736181	202736181	T	C	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.584	p.Q195R	1.000	superfamily_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	110	0	0	111	36	24.49	-	-	-	C	202736181	T	C	202736181	3	2	845	1	0	0	0	0	1	0	0	0	8187	1580	55	5	4142	5	KDM5B	1	202736181	Missense_Mutation	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09	4067479	202736181	46514440	5	70306										
CDC42BPA	0	genome.wustl.edu	37	chr1	227259959	227259959	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttatcagctgttcgatttctGagagtagttccaagttcttc	8	8	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	227259959	227259959	G	C	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	nonsense	c.2777	p.S926*	0.982	pfam_Myotonic_dystrophy_kinase_coil	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	186	0	0	142	24	14.46	-	-	-	C	227259959	G	C	227259959	4	2	845	1	0	0	0	0	0	1	0	0	3101	1294	45	2	2450	2	CDC42BPA	1	227259959	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	24523778	227259959	21990662	6	70307										
AKT3	0	genome.wustl.edu	37	chr1	243828108	243828108	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	atctacatgaaatgttctctCtataacagtagtccactgga	6	9	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	1	243828108	243828108	C	T	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	missense	c.250	p.E84K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	171	0	0	94	16	14.55	-	-	-	T	243828108	C	T	243828108	3	4	845	1	0	0	0	0	1	0	0	0	481	922	32	2	1281	2	AKT3	1	243828108	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	16568149	243828108	5422513	7	70308										
NRXN1	0	genome.wustl.edu	37	chr2	50149372	50149372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tggatacggctctctgccgcCtgctcgggttgggttggcta	15	11	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	50149372	50149372	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.4210	p.G1404S	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	46	0	0	50	12	19.35	-	-	-	T	50149372	C	T	50149372	3	4	845	1	0	0	0	0	1	0	0	0	10738	681	24	4	293	4	NRXN1	2	50149372	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		50149372	193050001	8	70309										
LBX2	0	genome.wustl.edu	37	chr2	74725249	74725249	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttgagcttggctcgccggttCtggaaccaagtgaccacctg	12	12	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	74725249	74725249	C	T	SNP	LBX2	ENST00000377566	human	ensembl	69_37n	-1	known	silent	c.402	p.Q134	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	LBX2	HGNC	ENSG00000179528	12	0	0	14	5	26.32	-	-	-	T	74725249	C	T	74725249	2	4	845	1	0	0	0	0	0	0	0	1	8708	912	32	2		2	LBX2	2	74725249	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	24575877	74725249	168474124	9	70310										
DPP10	0	genome.wustl.edu	37	chr2	116520181	116520181	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	catcagatacgtggctctctCagcaggtacagtataggtgg	12	9	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	116520181	116520181	C	G	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.1120	p.Q374E	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	159	0	0	130	17	11.56	-	-	-	G	116520181	C	G	116520181	3	3	845	1	0	0	0	0	1	0	0	0	4762	827	29	2	1325	2	DPP10	2	116520181	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	41794932	116520181	126679192	10	70311										
TTN	0	genome.wustl.edu	37	chr2	179458942	179458942	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ctcgaatcgtgagcttatctCtgaagtcgaggtgaagcgtt	12	8	1	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	179458942	179458942	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.50474	p.R16825K	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	66	0	0	57	9	13.64	-	-	-	T	179458942	C	T	179458942	3	4	845	1	0	0	0	0	1	0	0	0	16832	913	32	2	50065	2	TTN	2	179458942	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	62938761	179458942	63740431	11	70312										
TTN	0	genome.wustl.edu	37	chr2	179466175	179466175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tccatcaatagtcctcttctCaataacatagcctttgatcc	3	13	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	179466175	179466175	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47845	p.E15949Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	126	0	0	110	23	17.29	-	-	-	G	179466175	C	G	179466175	3	3	845	1	0	0	0	0	1	0	0	0	16832	835	29	2	52448	2	TTN	2	179466175	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	7233	179466175	63733198	12	70313										
C2orf47	0	genome.wustl.edu	37	chr2	200826646	200826646	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aaacaacttcttagtgcaagCtatgagtaagtttaatcaga	7	6	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	200826646	200826646	C	T	SNP	C2orf47	ENST00000295079	human	ensembl	69_37n	1	known	silent	c.792	p.S264	0.916	NULL	NULL	-	no_errors	C2orf47	HGNC	ENSG00000162972	72	0	0	51	20	28.17	-	-	-	T	200826646	C	T	200826646	2	4	845	1	0	0	0	0	0	0	0	1	2189	796	28	4		4	C2orf47	2	200826646	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	21360471	200826646	42372727	13	70314										
NBEAL1	0	genome.wustl.edu	37	chr2	204058611	204058611	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	acctgtttcaacaccttcctGaactcaagtcattttttata	3	11	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	204058611	204058611	G	T	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	1	known	nonsense	c.6928	p.E2310*	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	103	0	0	87	13	13	-	-	-	T	204058611	G	T	204058611	4	4	845	1	0	0	0	0	0	1	0	0	10260	1291	45	2	7106	2	NBEAL1	2	204058611	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	3231965	204058611	39140762	14	70315										
NRP2	0	genome.wustl.edu	37	chr2	206656994	206656994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tacatgagagagaaggatatGaagatgaaattgatggtgag	14	1	0	7			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	206656994	206656994	G	A	SNP	NRP2	ENST00000360409	human	ensembl	69_37n	1	known	missense	c.2476	p.E826K	1.000	pirsf_Neuropilin	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_ConA-like_lec_gl,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	167	0	0	129	21	14	-	-	-	A	206656994	G	A	206656994	3	1	845	1	0	0	0	0	1	0	0	0	10734	1291	45	2	2850	2	NRP2	2	206656994	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	2598383	206656994	36542379	15	70316										
ADAM23	0	genome.wustl.edu	37	chr2	207482334	207482334	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agagaaggttcgatcctactCagcaaggccccatctgaatc	9	12	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	207482334	207482334	C	A	SNP	ADAM23	ENST00000444281	human	ensembl	69_37n	1	known	nonsense	c.215	p.S72*	0.992	NULL	pfam_EGF_extracell,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ADAM23	HGNC	ENSG00000114948	63	0	0	46	24	34.29	-	-	-	A	207482334	C	A	207482334	4	1	845	1	0	0	0	0	0	1	0	0	245	827	29	2	2584	2	ADAM23	2	207482334	Nonsense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	825340	207482334	35717039	16	70317										
ECEL1	0	genome.wustl.edu	37	chr2	233349542	233349542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tcttctgcagctgccccagcGtcaccttgttgtacatggag	10	13	3	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	2	233349542	233349542	G	A	SNP	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	missense	c.1028	p.T343M	0.998	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	58	0	0	47	17	26.15	-	-	-	A	233349542	G	A	233349542	3	1	845	1	0	0	0	0	1	0	0	0	4926	1145	40	1	1355	1	ECEL1	2	233349542	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	25867208	233349542	9849831	17	70318										
SLC6A1	0	genome.wustl.edu	37	chr3	11059539	11059539	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttacctgcaggagccttcctGatcccctatttcctgacact	6	15	0	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	11059539	11059539	G	A	SNP	SLC6A1	ENST00000287766	human	ensembl	69_37n	1	known	silent	c.249	p.L83	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	-	no_errors	SLC6A1	HGNC	ENSG00000157103	116	0	0	76	10	11.63	-	-	-	A	11059539	G	A	11059539	2	1	845	1	0	0	0	0	0	0	0	1	14762	1277	45	2		2	SLC6A1	3	11059539	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		11059539	186962891	18	70319										
SCN10A	0	genome.wustl.edu	37	chr3	38739417	38739417	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agagagtgtctgcaaagtccGagagagcagaaaaggtaata	13	5	1	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	38739417	38739417	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.5294	p.S1765W	0.999	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	54	0	0	35	7	16.67	-	-	-	C	38739417	G	C	38739417	3	2	845	1	0	0	0	0	1	0	0	0	14000	1059	37	3	580	3	SCN10A	3	38739417	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	27679878	38739417	159283013	19	70320										
SCN10A	0	genome.wustl.edu	37	chr3	38755528	38755528	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gggctttgatgggagccactTcagaatattccagaatcttc	10	9	2	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	38755528	38755528	T	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3725	p.E1242V	0.293	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	58	0	0	41	26	38.81	-	-	-	A	38755528	T	A	38755528	3	1	845	1	0	0	0	0	1	0	0	0	14000	1783	62	5	2173	5	SCN10A	3	38755528	Missense_Mutation	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09	16111	38755528	159266902	20	70321										
LAMB2	0	genome.wustl.edu	37	chr3	49163484	49163484	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agaagtcttgctgggcaccaGaccctcctcatggcattggt	11	12	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	49163484	49163484	G	T	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.2260	p.L754M	0.926	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	61	0	0	25	7	21.88	-	-	-	T	49163484	G	T	49163484	3	4	845	1	0	0	0	0	1	0	0	0	8665	933	33	2	3200	2	LAMB2	3	49163484	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	10407956	49163484	148858946	21	70322										
DOCK3	0	genome.wustl.edu	37	chr3	51101917	51101917	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttctacaaactacgccatgtGatgaatgaacttattgacct	6	9	1	4			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	51101917	51101917	G	T	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	silent	c.354	p.V118	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	41	0	0	27	5	15.62	-	-	-	T	51101917	G	T	51101917	2	4	845	1	0	0	0	0	0	0	0	1	4723	1277	45	2		2	DOCK3	3	51101917	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	1938433	51101917	146920513	22	70323										
UROC1	0	genome.wustl.edu	37	chr3	126228489	126228489	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tgatggcggcagccactttcGtctggcaggggtactgctca	14	11	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	126228489	126228489	G	T	SNP	UROC1	ENST00000290868	human	ensembl	69_37n	-1	known	missense	c.290	p.T97K	0.936	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	31	0	0	14	14	50	-	-	-	T	126228489	G	T	126228489	3	4	845	1	0	0	0	0	1	0	0	0	17125	1145	40	3	1996	3	UROC1	3	126228489	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	75126572	126228489	71793941	23	70324										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	82	0	0	39	25	39.06	-	-	-	A	178936091	G	A	178936091	3	1	845	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	52707602	178936091	19086339	24	70325										
MYL5	0	genome.wustl.edu	37	chr4	672772	672772	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cacactcatggatcagaaccGagatggcttcattgacaagg	10	10	3	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	4	672772	672772	G	C	SNP	MYL5	ENST00000400159	human	ensembl	69_37n	1	known	missense	c.137	p.R46P	0.905	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL5	HGNC	ENSG00000215375	44	0	0	39	6	13.33	-	-	-	C	672772	G	C	672772	3	2	845	1	0	0	0	0	1	0	0	0	10122	1058	37	3	147	3	MYL5	4	672772	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		672772	190481504	25	70326										
PKD2	0	genome.wustl.edu	37	chr4	88987028	88987028	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agagacgacttggagaaagaGagggtgggtctggtttagga	18	3	1	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	4	88987028	88987028	G	C	SNP	PKD2	ENST00000237596	human	ensembl	69_37n	1	known	missense	c.2355	p.E785D	1.000	pfscan_EF_HAND_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_HAND_2,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	85	0	0	59	11	15.71	-	-	-	C	88987028	G	C	88987028	3	2	845	1	0	0	0	0	1	0	0	0	12040	933	33	2	2401	2	PKD2	4	88987028	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	88314256	88987028	102167248	26	70327										
DCHS2	0	genome.wustl.edu	37	chr4	155254228	155254228	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agcgtgagctcccgctgctcGcccgcgcccaggctgccgtt	13	18	0	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	4	155254228	155254228	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.1635	p.G545	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	30	0	0	11	6	33.33	-	-	-	A	155254228	G	A	155254228	2	1	845	1	0	0	0	0	0	0	0	1	4319	1074	38	1		1	DCHS2	4	155254228	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	66267200	155254228	35900048	27	70328										
VEGFC	0	genome.wustl.edu	37	chr4	177650829	177650829	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	attttccaatattctgggtaGagtacagtcatgagttcatc	8	7	3	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	4	177650829	177650829	G	T	SNP	VEGFC	ENST00000280193	human	ensembl	69_37n	-1	known	silent	c.219	p.L73	0.993	NULL	pfam_PD_growth_factor,pfam_CXCXC_repeat,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFC	HGNC	ENSG00000150630	128	1	0.78	57	13	18.57	-	-	-	T	177650829	G	T	177650829	2	4	845	1	0	0	0	0	0	0	0	1	17249	929	33	2		2	VEGFC	4	177650829	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	22396601	177650829	13503447	28	70329										
LIFR	0	genome.wustl.edu	37	chr5	38504178	38504178	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aagaaagtttaacagctgttGaattaatatccttcactttg	6	6	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	5	38504178	38504178	G	C	SNP	LIFR	ENST00000263409	human	ensembl	69_37n	-1	known	nonsense	c.1337	p.S446*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594	42	0	0	44	8	15.38	-	-	-	C	38504178	G	C	38504178	4	2	845	1	0	0	0	0	0	1	0	0	8835	1294	45	2	2000	2	LIFR	5	38504178	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		38504178	142411082	29	70330										
MAP1B	0	genome.wustl.edu	37	chr5	71499538	71499538	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cggtcttcctactacgtggtGagtgggaatgaccctgctgc	13	11	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	5	71499538	71499538	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	69_37n	1	known	silent	c.7161	p.V2387	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	64	0	0	58	8	12.12	-	-	-	A	71499538	G	A	71499538	2	1	845	1	0	0	0	0	0	0	0	1	9299	1277	45	2		2	MAP1B	5	71499538	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	32995360	71499538	109415722	30	70331										
SLC22A4	0	genome.wustl.edu	37	chr5	131676322	131676322	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	actgtcctgattggaatcctCaccctttttttccctgaaag	6	12	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	5	131676322	131676322	C	A	SNP	SLC22A4	ENST00000200652	human	ensembl	69_37n	1	known	silent	c.1509	p.L503	0.648	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208	140	0	0	107	16	13.01	-	-	-	A	131676322	C	A	131676322	2	1	845	1	0	0	0	0	0	0	0	1	14545	813	29	2		2	SLC22A4	5	131676322	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	60176784	131676322	49238938	31	70332										
GNB2L1	0	genome.wustl.edu	37	chr5	180666577	180666577	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gacacccactctgagtggctCtcatcctacagaagatggaa	9	12	2	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	5	180666577	180666577	C	T	SNP	GNB2L1	ENST00000504128	human	ensembl	69_37n	-1	putative	missense	c.154	p.E52K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNB2L1	HGNC	ENSG00000204628	20	0	0	28	8	22.22	-	-	-	T	180666577	C	T	180666577	3	4	845	1	0	0	0	0	1	0	0	0	6570	912	32	2	538	2	GNB2L1	5	180666577	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	48990255	180666577	248683	32	70333										
RPP40	0	genome.wustl.edu	37	chr6	5002461	5002461	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttccgatagtatcccacattCaggaatgagaaatgaaacct	7	9	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	6	5002461	5002461	C	G	SNP	RPP40	ENST00000380051	human	ensembl	69_37n	-1	known	missense	c.142	p.E48Q	1.000	NULL	pfam_RNase_P_Rpp40	-	no_errors	RPP40	HGNC	ENSG00000124787	106	0	0	69	11	13.75	-	-	-	G	5002461	C	G	5002461	3	3	845	1	0	0	0	0	1	0	0	0	13700	835	29	2	977	2	RPP40	6	5002461	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		5002461	166112606	33	70334										
ZNF391	0	genome.wustl.edu	37	chr6	27369106	27369106	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggcttcagtcgaagctcatcCcttattattcatcagagaac	7	11	4	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	6	27369106	27369106	C	A	SNP	ZNF391	ENST00000244576	human	ensembl	69_37n	1	known	silent	c.957	p.S319	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF391	HGNC	ENSG00000124613	58	0	0	44	9	16.98	-	-	-	A	27369106	C	A	27369106	2	1	845	1	0	0	0	0	0	0	0	1	17975	610	22	4		4	ZNF391	6	27369106	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	22366645	27369106	143745961	34	70335										
ETV7	0	genome.wustl.edu	37	chr6	36343650	36343650	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cctgtgcgtttccctgacctGagctgggcgcacggtgccgg	15	14	0	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	6	36343650	36343650	G	C	SNP	ETV7	ENST00000340181	human	ensembl	69_37n	-1	known	nonsense	c.305	p.S102*	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV7	HGNC	ENSG00000010030	33	0	0	36	5	12.2	-	-	-	C	36343650	G	C	36343650	4	2	845	1	0	0	0	0	0	1	0	0	5321	1294	45	2	744	2	ETV7	6	36343650	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	8974544	36343650	134771417	35	70336										
KIAA0240	0	genome.wustl.edu	37	chr6	42797254	42797254	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	attcccccatgggccaacctCacgcaccccaaagtcagttc	6	18	2	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	6	42797254	42797254	C	A	SNP	KIAA0240	ENST00000314073	human	ensembl	69_37n	1	known	missense	c.1183	p.H395N	1.000	NULL	NULL	-	no_errors	KIAA0240	HGNC	ENSG00000112624	72	0	0	57	8	12.31	-	-	-	A	42797254	C	A	42797254	3	1	845	1	0	0	0	0	1	0	0	0	8216	826	29	2	1197	2	KIAA0240	6	42797254	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	6453604	42797254	128317813	36	70337										
FUCA2	0	genome.wustl.edu	37	chr6	143828431	143828431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	accagaggcctgaaaaatatCtgcccactggttggcattaa	9	10	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	6	143828431	143828431	C	T	SNP	FUCA2	ENST00000002165	human	ensembl	69_37n	-1	known	missense	c.355	p.D119N	1.000	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA2	HGNC	ENSG00000001036	81	0	0	36	11	23.4	-	-	-	T	143828431	C	T	143828431	3	4	845	1	0	0	0	0	1	0	0	0	6144	913	32	2	1072	2	FUCA2	6	143828431	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	101031177	143828431	27286636	37	70338										
IQUB	0	genome.wustl.edu	37	chr7	123097473	123097473	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cttgagatgagcagctgcttCatctttggtaagaagaatgc	11	7	2	4			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	7	123097473	123097473	C	A	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	nonsense	c.2155	p.E719*	1.000	NULL	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	75	0	0	32	19	37.25	-	-	-	A	123097473	C	A	123097473	4	1	845	1	0	0	0	0	0	1	0	0	7874	835	29	2	228	2	IQUB	7	123097473	Nonsense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		123097473	36041190	38	70339										
ENTPD4	0	genome.wustl.edu	37	chr8	23299120	23299120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gcttacagttttggggacttCgtacgctatctgagtcgaca	11	9	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	8	23299120	23299120	C	T	SNP	ENTPD4	ENST00000358689	human	ensembl	69_37n	-1	known	missense	c.844	p.E282K	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217	43	0	0	30	11	26.83	-	-	-	T	23299120	C	T	23299120	3	4	845	1	0	0	0	0	1	0	0	0	5178	893	31	1	1030	1	ENTPD4	8	23299120	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		23299120	123064902	39	70340										
SULF1	0	genome.wustl.edu	37	chr8	70498615	70498615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tttttggaaaatacctcaatGaatataatggcagctacatc	6	7	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	8	70498615	70498615	G	A	SNP	SULF1	ENST00000260128	human	ensembl	69_37n	1	known	missense	c.436	p.E146K	1.000	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	60	0	0	52	14	21.21	-	-	-	A	70498615	G	A	70498615	3	1	845	1	0	0	0	0	1	0	0	0	15461	1291	45	2	446	2	SULF1	8	70498615	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	47199495	70498615	75865407	40	70341										
EFR3A	0	genome.wustl.edu	37	chr8	133023110	133023110	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	accaatctgtcccagtctatGagatgaagtttccagatctg	8	10	3	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	8	133023110	133023110	G	C	SNP	EFR3A	ENST00000254624	human	ensembl	69_37n	1	known	missense	c.2434	p.E812Q	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294	109	0	0	114	21	15.56	-	-	-	C	133023110	G	C	133023110	3	2	845	1	0	0	0	0	1	0	0	0	4993	1291	45	2	2524	2	EFR3A	8	133023110	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	62524495	133023110	13340912	41	70342										
NR4A3	0	genome.wustl.edu	37	chr9	102595783	102595783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aatgaatgatcagggtctctAtttatggctactagtaataa	8	5	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	9	102595783	102595783	A	G	SNP	NR4A3	ENST00000338488	human	ensembl	69_37n	1	known	missense	c.1301	p.Y434C	0.000	NULL	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508	96	0	0	62	18	22.5	-	-	-	G	102595783	A	G	102595783	3	3	845	1	0	0	0	0	1	0	0	0	10707	449	16	5	1348	5	NR4A3	9	102595783	Missense_Mutation	SNP	A	TCGA-E9-A1R4-01A-21D-A14G-09		102595783	38617648	42	70343										
SVEP1	0	genome.wustl.edu	37	chr9	113173528	113173528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gtttgatccacttgcatagcCattcatgatgcttggtggct	10	9	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	9	113173528	113173528	C	A	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.6463	p.G2155C	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	73	0	0	55	18	24.66	-	-	-	A	113173528	C	A	113173528	3	1	845	1	0	0	0	0	1	0	0	0	15511	594	21	4	4300	4	SVEP1	9	113173528	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	10577745	113173528	28039903	43	70344										
FKBP15	0	genome.wustl.edu	37	chr9	115932000	115932000	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ctgggaagtggtgagggcctGaggaggcaacgggacagctt	19	7	0	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	9	115932000	115932000	G	A	SNP	FKBP15	ENST00000238256	human	ensembl	69_37n	-1	known	nonsense	c.2989	p.Q997*	0.122	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321	48	0	0	54	6	10	-	-	-	A	115932000	G	A	115932000	4	1	845	1	0	0	0	0	0	1	0	0	5951	1299	45	2	682	2	FKBP15	9	115932000	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	2758472	115932000	25281431	44	70345										
PIP4K2A	0	genome.wustl.edu	37	chr10	22896829	22896829	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gcaaaacccatttcctactgGaagcaaatgttacaaacgca	6	11	0	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	10	22896829	22896829	G	A	SNP	PIP4K2A	ENST00000432610	human	ensembl	69_37n	-1	known	silent	c.222	p.F74	0.010	NULL	NULL	-	no_start_codon	PIP4K2A	HGNC	ENSG00000150867	79	0	0	39	11	22	-	-	-	A	22896829	G	A	22896829	2	1	845	1	0	0	0	0	0	0	0	1	12010	1189	41	2		2	PIP4K2A	10	22896829	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		22896829	112637918	45	70346										
PRTFDC1	0	genome.wustl.edu	37	chr10	25226277	25226277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tcctatgtctttcataatatCcttggccagccgctcaattc	5	13	3	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	10	25226277	25226277	C	A	SNP	PRTFDC1	ENST00000320152	human	ensembl	69_37n	-1	known	missense	c.175	p.D59Y	1.000	pfam_PRibTrfase,tigrfam_Hxn_phspho_trans	pfam_PRibTrfase,tigrfam_Hxn_phspho_trans	-	no_errors	PRTFDC1	HGNC	ENSG00000099256	62	0	0	45	11	19.64	-	-	-	A	25226277	C	A	25226277	3	1	845	1	0	0	0	0	1	0	0	0	12717	855	30	2	530	2	PRTFDC1	10	25226277	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	2329448	25226277	110308470	46	70347										
ENKUR	0	genome.wustl.edu	37	chr10	25288342	25288342	+	Frame_Shift_Del	DEL	T	T	-													0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aaacctactgggtggtagagTtttttcctttgaatgtttct							TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	10	25288342	25288342	T	-	DEL	ENKUR	ENST00000331161	human	ensembl	69_37n	-1	known	frame_shift_del	c.211	p.T71fs	0.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023	130	0	0	73	16	17.98	-	-	-	-	25288342	T	-	25288342	7	5	845	1	0	1	0	1	0	0	0	0	5157	1725	60	0	579	0	ENKUR	10	25288342	Frame_Shift_Del	DEL	T	TCGA-E9-A1R4-01A-21D-A14G-09	62065	25288342	110246405	47	70348										
OGDHL	0	genome.wustl.edu	37	chr10	50944413	50944413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tcaggcacacctgctccaggCgcgtgatggccactttctcc	10	16	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	10	50944413	50944413	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.2744	p.R915H	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	42	0	0	29	11	27.5	-	-	-	T	50944413	C	T	50944413	3	4	845	1	0	0	0	0	1	0	0	0	10913	768	27	1	300	1	OGDHL	10	50944413	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	25656071	50944413	84590334	48	70349										
TET1	0	genome.wustl.edu	37	chr10	70360776	70360776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aggccccagagggaaaagaaGcccaaagttttaaaggtaat	11	7	0	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	10	70360776	70360776	G	T	SNP	TET1	ENST00000373644	human	ensembl	69_37n	1	known	missense	c.1953	p.K651N	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	116	1	0.85	93	13	12.26	-	-	-	T	70360776	G	T	70360776	3	4	845	1	0	0	0	0	1	0	0	0	15864	962	34	4	1959	4	TET1	10	70360776	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	19416363	70360776	65173971	49	70350										
ANO9	0	genome.wustl.edu	37	chr11	418925	418925	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttctgagccctcaatcccatCagggtcctggaagtccttgg	10	13	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	418925	418925	C	T	SNP	ANO9	ENST00000332826	human	ensembl	69_37n	-1	known	missense	c.1999	p.D667N	0.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	77	0	0	54	12	18.18	-	-	-	T	418925	C	T	418925	3	4	845	1	0	0	0	0	1	0	0	0	703	826	29	2	361	2	ANO9	11	418925	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		418925	134587591	50	70351										
OR52I2	0	genome.wustl.edu	37	chr11	4608668	4608668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tgtggttgtccactcctactGtgagcacatagctttggcca	10	11	0	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	4608668	4608668	G	A	SNP	OR52I2	ENST00000312614	human	ensembl	69_37n	1	known	missense	c.626	p.C209Y	1.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52I2	HGNC	ENSG00000226288	100	0	0	93	15	13.89	-	-	-	A	4608668	G	A	4608668	3	1	845	1	0	0	0	0	1	0	0	0	11194	1377	48	4	628	4	OR52I2	11	4608668	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	4189743	4608668	130397848	51	70352										
C11orf74	0	genome.wustl.edu	37	chr11	36654963	36654963	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	taaaaccatctttcttcgtaCttcatcacaatgtttggaag	5	9	4	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	36654963	36654963	C	A	SNP	C11orf74	ENST00000334307	human	ensembl	69_37n	1	known	missense	c.266	p.T89N	0.257	NULL	NULL	-	no_errors	C11orf74	HGNC	ENSG00000166352	60	0	0	40	8	16.67	-	-	-	A	36654963	C	A	36654963	3	1	845	1	0	0	0	0	1	0	0	0	1673	565	20	4	272	4	C11orf74	11	36654963	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	32046295	36654963	98351553	52	70353										
OR4S1	0	genome.wustl.edu	37	chr11	48328481	48328481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggaccggcgtaaggctgtctCcacatgtggctcacacgtaa	12	12	2	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	48328481	48328481	C	G	SNP	OR4S1	ENST00000319988	human	ensembl	69_37n	1	known	missense	c.707	p.S236C	0.493	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	104	0	0	95	18	15.93	-	-	-	G	48328481	C	G	48328481	3	3	845	1	0	0	0	0	1	0	0	0	11155	855	30	2	709	2	OR4S1	11	48328481	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	11673518	48328481	86678035	53	70354										
TMPRSS5	0	genome.wustl.edu	37	chr11	113569711	113569711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ctcctcatcctgcaaggtccCggaaatgggctgagaggcag	13	12	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	113569711	113569711	C	T	SNP	TMPRSS5	ENST00000299882	human	ensembl	69_37n	-1	known	missense	c.244	p.G82R	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS5	HGNC	ENSG00000166682	54	0	0	45	9	16.67	-	-	-	T	113569711	C	T	113569711	3	4	845	1	0	0	0	0	1	0	0	0	16345	652	23	1	1169	1	TMPRSS5	11	113569711	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	65241230	113569711	21436805	54	70355										
PKNOX2	0	genome.wustl.edu	37	chr11	125301095	125301095	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggacaacctgcagtccctgtCctcagacagtgccaccatgg	10	15	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	11	125301095	125301095	C	G	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	1	known	missense	c.1226	p.S409C	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	28	0	0	18	15	45.45	-	-	-	G	125301095	C	G	125301095	3	3	845	1	0	0	0	0	1	0	0	0	12057	855	30	2	1264	2	PKNOX2	11	125301095	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	11731384	125301095	9705421	55	70356										
XPOT	0	genome.wustl.edu	37	chr12	64815079	64815079	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tggaatgggacagtcattgaTagttagttggagtaaattaa	12	2	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	64815079	64815079	T	A	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	missense	c.908	p.I303K	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	109	0	0	84	14	14.29	-	-	-	A	64815079	T	A	64815079	3	1	845	1	0	0	0	0	1	0	0	0	17547	1406	49	5	938	5	XPOT	12	64815079	Missense_Mutation	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09		64815079	69036816	56	70357										
XPOT	0	genome.wustl.edu	37	chr12	64815164	64815164	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	attgaaacaaaagtggcactGatgttgcagctactaattca	8	7	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	64815164	64815164	G	A	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	silent	c.993	p.L331	0.867	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	122	0	0	108	18	14.29	-	-	-	A	64815164	G	A	64815164	2	1	845	1	0	0	0	0	0	0	0	1	17547	1277	45	2		2	XPOT	12	64815164	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	85	64815164	69036731	57	70358										
GNS	0	genome.wustl.edu	37	chr12	65122796	65122796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tttaggtcgtagccagcaatGtccaaaatagtaggacccaa	9	9	0	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	65122796	65122796	G	A	SNP	GNS	ENST00000258145	human	ensembl	69_37n	-1	known	silent	c.1140	p.D380	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677	89	0	0	91	18	16.51	-	-	-	A	65122796	G	A	65122796	2	1	845	1	0	0	0	0	0	0	0	1	6602	1368	48	4		4	GNS	12	65122796	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	307632	65122796	68729099	58	70359										
TCHP	0	genome.wustl.edu	37	chr12	110341868	110341868	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gccagagaactggaggagctGaggctgagcatgaacttgca	15	8	0	4			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	110341868	110341868	G	C	SNP	TCHP	ENST00000312777	human	ensembl	69_37n	1	known	silent	c.315	p.L105	0.722	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437	50	0	0	45	13	22.41	-	-	-	C	110341868	G	C	110341868	2	2	845	1	0	0	0	0	0	0	0	1	15797	1277	45	2		2	TCHP	12	110341868	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	45219072	110341868	23510027	59	70360										
WDR66	0	genome.wustl.edu	37	chr12	122361793	122361793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gggacaagaaaggagagtatCcgacatccagtccaaagcag	12	9	0	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	122361793	122361793	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.644	p.S215F	0.009	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	53	0	0	38	12	24	-	-	-	T	122361793	C	T	122361793	3	4	845	1	0	0	0	0	1	0	0	0	17414	855	30	2	650	2	WDR66	12	122361793	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	12019925	122361793	11490102	60	70361										
WDR66	0	genome.wustl.edu	37	chr12	122361879	122361880	+	Frame_Shift_Ins	INS	-	-	C													0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gtttcaaaaggataaaagcaINSccccggtgtatcccttggta							TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	122361879	122361880	-	C	INS	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	frame_shift_ins	c.730_731	p.V246fs	0.000:0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	26	0	0	20	4	16.67	-	-	-	C	122361880	-	C	122361879	7	5	845	1	0	1	1	0	0	0	0	0	17414	159	6	0	736	0	WDR66	12	122361879	Frame_Shift_Ins	INS	-	TCGA-E9-A1R4-01A-21D-A14G-09	86	122361879	11490016	61	70362										
KNTC1	0	genome.wustl.edu	37	chr12	123068876	123068876	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	actgggaaattgctatttctGacatgtcagaagctttgtca	9	7	3	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	12	123068876	123068876	G	C	SNP	KNTC1	ENST00000333479	human	ensembl	69_37n	1	known	silent	c.3315	p.L1105	0.023	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	90	0	0	50	31	38.27	-	-	-	C	123068876	G	C	123068876	2	2	845	1	0	0	0	0	0	0	0	1	8481	1277	45	2		2	KNTC1	12	123068876	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	706997	123068876	10783019	62	70363										
MYCBP2	0	genome.wustl.edu	37	chr13	77663147	77663147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agctcaggagacggatgtctCaaaagggaagaaccaacttc	11	9	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	13	77663147	77663147	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.10545	p.L3515F	0.993	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	47	0	0	38	8	17.39	-	-	-	G	77663147	C	G	77663147	3	3	845	1	0	0	0	0	1	0	0	0	10090	825	29	2	3583	2	MYCBP2	13	77663147	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		77663147	37506731	63	70364										
SCFD1	0	genome.wustl.edu	37	chr14	31188583	31188583	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aatgctgcggggcaatgacaGgtaagcagcttttgtcttgt	13	7	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	14	31188583	31188583	G	C	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	1	known	missense	c.1736	p.S579T	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	126	0	0	106	16	13.11	-	-	-	C	31188583	G	C	31188583	3	2	845	1	0	0	0	0	1	0	0	0	13976	1014	35	4	1818	4	SCFD1	14	31188583	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		31188583	76160957	64	70365										
LTK	0	genome.wustl.edu	37	chr15	41804458	41804458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cgcccgcggctccgtaggctGagatcctgcggggaacggac	16	14	0	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	15	41804458	41804458	G	A	SNP	LTK	ENST00000263800	human	ensembl	69_37n	-1	known	missense	c.365	p.S122L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	20	0	0	3	4	57.14	-	-	-	A	41804458	G	A	41804458	3	1	845	1	0	0	0	0	1	0	0	0	9146	1294	45	2	2297	2	LTK	15	41804458	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		41804458	60726934	65	70366										
SNUPN	0	genome.wustl.edu	37	chr15	75897511	75897511	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aggattaagcttggttttctCtcccagtccttcttcttctg	7	11	4	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	15	75897511	75897511	C	T	SNP	SNUPN	ENST00000371091	human	ensembl	69_37n	-1	known	missense	c.784	p.E262K	1.000	pirsf_Snurportin-1	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371	185	0	0	82	14	14.43	-	-	-	T	75897511	C	T	75897511	3	4	845	1	0	0	0	0	1	0	0	0	14966	922	32	2	436	2	SNUPN	15	75897511	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	34093053	75897511	26633881	66	70367										
VPS33B	0	genome.wustl.edu	37	chr15	91550259	91550259	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tcctcctcctccaggttcctCcacaattcatatgccatctg	4	17	2	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	15	91550259	91550259	C	G	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	missense	c.621	p.W207C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	57	0	0	48	13	21.31	-	-	-	G	91550259	C	G	91550259	3	3	845	1	0	0	0	0	1	0	0	0	17299	856	30	2	1292	2	VPS33B	15	91550259	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	15652748	91550259	10981133	67	70368										
BAIAP3	0	genome.wustl.edu	37	chr16	1392617	1392617	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggacactgccacctggttctCaagctgatcactacgcaggt	10	13	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	16	1392617	1392617	C	G	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	silent	c.1152	p.L384	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	23	0	0	40	9	18.37	-	-	-	G	1392617	C	G	1392617	2	3	845	1	0	0	0	0	0	0	0	1	1308	813	29	2		2	BAIAP3	16	1392617	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		1392617	88962136	68	70369										
CRAMP1L	0	genome.wustl.edu	37	chr16	1719082	1719082	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cctccccgtccagcagccccCagccacactggatcgcctct	7	22	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	16	1719082	1719082	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	nonsense	c.3415	p.Q1139*	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	49	0	0	53	17	24.29	-	-	-	T	1719082	C	T	1719082	4	4	845	1	0	0	0	0	0	1	0	0	3876	595	21	4	3485	4	CRAMP1L	16	1719082	Nonsense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	326465	1719082	88635671	69	70370										
OTOA	0	genome.wustl.edu	37	chr16	21726421	21726421	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggtcctgagaagtgccgtctCccagtatgtatccgacttgt	11	11	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	16	21726421	21726421	C	G	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	missense	c.1478	p.S493C	0.952	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	69	0	0	72	9	11.11	-	-	-	G	21726421	C	G	21726421	3	3	845	1	0	0	0	0	1	0	0	0	11375	855	30	2	1532	2	OTOA	16	21726421	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	20007339	21726421	68628332	70	70371										
COG7	0	genome.wustl.edu	37	chr16	23415115	23415115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	taagccgagtcagcgctgctCgaggtgcagccagcaggttg	15	11	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	16	23415115	23415115	C	T	SNP	COG7	ENST00000307149	human	ensembl	69_37n	-1	known	missense	c.1703	p.R568Q	0.908	pfam_COG_su7	pfam_COG_su7	-	no_errors	COG7	HGNC	ENSG00000168434	52	0	0	58	29	33.33	-	-	-	T	23415115	C	T	23415115	3	4	845	1	0	0	0	0	1	0	0	0	3693	884	31	1	629	1	COG7	16	23415115	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	1688694	23415115	66939638	71	70372										
TRPV3	0	genome.wustl.edu	37	chr17	3430193	3430193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agaggatggactgcagatccGagggtctcagcaggaagatg	16	7	1	3			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	17	3430193	3430193	G	A	SNP	TRPV3	ENST00000301365	human	ensembl	69_37n	-1	known	missense	c.1532	p.S511L	0.989	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	56	0	0	32	8	20	-	-	-	A	3430193	G	A	3430193	3	1	845	1	0	0	0	0	1	0	0	0	16693	1059	37	1	868	1	TRPV3	17	3430193	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		3430193	77765017	72	70373										
MYO18A	0	genome.wustl.edu	37	chr17	27493080	27493080	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cctgactgccggatcatctcCacaatctcatccctggactt	6	16	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	17	27493080	27493080	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	silent	c.879	p.V293	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	17	0	0	5	7	58.33	-	-	-	T	27493080	C	T	27493080	2	4	845	1	0	0	0	0	0	0	0	1	10137	581	21	4		4	MYO18A	17	27493080	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	24062887	27493080	53702130	73	70374										
MLX	0	genome.wustl.edu	37	chr17	40722064	40722064	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aaggggaggaccaggtctctGaccaggtcaagttcaacgtg	14	9	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	17	40722064	40722064	G	C	SNP	MLX	ENST00000246912	human	ensembl	69_37n	1	known	missense	c.703	p.D235H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MLX	HGNC	ENSG00000108788	64	0	0	41	12	22.64	-	-	-	C	40722064	G	C	40722064	3	2	845	1	0	0	0	0	1	0	0	0	9706	1290	45	2	729	2	MLX	17	40722064	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	13228984	40722064	40473146	74	70375										
MYOM1	0	genome.wustl.edu	37	chr18	3187502	3187502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tgacacgaggttctggccagCctgctatggagcaatgcaat	12	10	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	18	3187502	3187502	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.905	p.G302D	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	65	0	0	75	11	12.79	-	-	-	T	3187502	C	T	3187502	3	4	845	1	0	0	0	0	1	0	0	0	10163	739	26	4	4288	4	MYOM1	18	3187502	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		3187502	74889746	75	70376										
ST8SIA3	0	genome.wustl.edu	37	chr18	55027376	55027376	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agggaagatcttccataccaTtactatgacaaaaaaggaac	7	8	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	18	55027376	55027376	T	C	SNP	ST8SIA3	ENST00000324000	human	ensembl	69_37n	1	known	silent	c.1011	p.H337	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511	59	0	0	71	16	18.39	-	-	-	C	55027376	T	C	55027376	2	2	845	1	0	0	0	0	0	0	0	1	15324	1490	52	5		5	ST8SIA3	18	55027376	Silent	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09	51839874	55027376	23049872	76	70377										
MYO1F	0	genome.wustl.edu	37	chr19	8587599	8587599	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cccggggtcgtctgctggctCccagggatgtggacggaggg	19	11	1	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	19	8587599	8587599	C	G	SNP	MYO1F	ENST00000338257	human	ensembl	69_37n	-1	known	missense	c.2969	p.G990A	0.995	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347	16	0	0	13	6	31.58	-	-	-	G	8587599	C	G	8587599	3	3	845	1	0	0	0	0	1	0	0	0	10145	855	30	2	339	2	MYO1F	19	8587599	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		8587599	50541384	77	70378										
UBA52	0	genome.wustl.edu	37	chr19	18685883	18685883	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gcaggtgctatgctcgccttCaccctcgtgctgtcaactgc	10	15	2	0			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	19	18685883	18685883	C	T	SNP	UBA52	ENST00000430157	human	ensembl	69_37n	1	known	missense	c.310	p.H104Y	1.000	pfam_Ribosomal_L40e	pfam_Ubiquitin,pfam_Ribosomal_L40e,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBA52	HGNC	ENSG00000221983	55	0	0	30	5	14.29	-	-	-	T	18685883	C	T	18685883	3	4	845	1	0	0	0	0	1	0	0	0	16928	826	29	2	324	2	UBA52	19	18685883	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	10098284	18685883	40443100	78	70379										
TM6SF2	0	genome.wustl.edu	37	chr19	19379481	19379481	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	agcgcccggggctggctgaaGaccttcatgccagcccagca	13	15	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	19	19379481	19379481	G	T	SNP	TM6SF2	ENST00000389363	human	ensembl	69_37n	-1	known	silent	c.567	p.V189	0.996	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996	54	0	0	44	7	13.46	-	-	-	T	19379481	G	T	19379481	2	4	845	1	0	0	0	0	0	0	0	1	16068	929	33	2		2	TM6SF2	19	19379481	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	693598	19379481	39749502	79	70380										
TSHZ3	0	genome.wustl.edu	37	chr19	31767666	31767666	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	atctgactgttaatctgttcGgtggacagtttggataagtc	11	6	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	19	31767666	31767666	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.3033	p.T1011	0.175	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	125	1	0.79	63	38	37.62	-	-	-	A	31767666	G	A	31767666	2	1	845	1	0	0	0	0	0	0	0	1	16721	1103	39	1		1	TSHZ3	19	31767666	Silent	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	12388185	31767666	27361317	80	70381										
LILRB3	0	genome.wustl.edu	37	chr19	54726628	54726628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gacagactcacctgcctgcaCgcgggtcctggggcccagac	13	16	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	19	54726628	54726628	C	T	SNP	LILRB3	ENST00000346401	human	ensembl	69_37n	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	42	0	0	21	4	16	-	-	-	T	54726628	C	T	54726628	3	4	845	1	0	0	0	0	1	0	0	0	8847	536	19	1	1885	1	LILRB3	19	54726628	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	22958962	54726628	4402355	81	70382										
TFAP2C	0	genome.wustl.edu	37	chr20	55209300	55209300	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ggcggaaagccgctcatgtgActctcctgacatccttagta	10	12	2	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	20	55209300	55209300	A	C	SNP	TFAP2C	ENST00000201031	human	ensembl	69_37n	1	known	missense	c.898	p.T300P	1.000	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510	68	0	0	39	26	40	-	-	-	C	55209300	A	C	55209300	3	2	845	1	0	0	0	0	1	0	0	0	15884	275	10	5	916	5	TFAP2C	20	55209300	Missense_Mutation	SNP	A	TCGA-E9-A1R4-01A-21D-A14G-09		55209300	7816220	82	70383										
DSCAM	0	genome.wustl.edu	37	chr21	41719621	41719621	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	aaggaccacctgcacatagtCttgagcggacagcttgtcct	10	12	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	21	41719621	41719621	C	G	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396H	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	87	0	0	39	25	39.06	-	-	-	G	41719621	C	G	41719621	3	3	845	1	0	0	0	0	1	0	0	0	4803	913	32	2	4964	2	DSCAM	21	41719621	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		41719621	6410274	83	70384										
DIP2A	0	genome.wustl.edu	37	chr21	47931393	47931393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gacgagtgtgctgagaggggAgcctctcactgcaggtgtcc	16	10	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	21	47931393	47931393	A	G	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.971	p.E324G	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	32	0	0	19	15	44.12	-	-	-	G	47931393	A	G	47931393	3	3	845	1	0	0	0	0	1	0	0	0	4563	304	11	5	998	5	DIP2A	21	47931393	Missense_Mutation	SNP	A	TCGA-E9-A1R4-01A-21D-A14G-09	6211772	47931393	198502	84	70385										
GNB1L	0	genome.wustl.edu	37	chr22	19794230	19794230	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cccagcttggcatctgccttCggcttcagggcgcacactga	11	15	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	22	19794230	19794230	C	G	SNP	GNB1L	ENST00000329517	human	ensembl	69_37n	-1	known	silent	c.468	p.P156	0.958	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1L	HGNC	ENSG00000185838	19	0	0	20	7	25.93	-	-	-	G	19794230	C	G	19794230	2	3	845	1	0	0	0	0	0	0	0	1	6568	871	31	3		3	GNB1L	22	19794230	Silent	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09		19794230	31510336	85	70386										
EIF2S3	0	genome.wustl.edu	37	chrX	24082437	24082437	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ccccaagagactttacttcaGagccccggcttattggtaag	9	12	1	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	24082437	24082437	G	A	SNP	EIF2S3	ENST00000253039	human	ensembl	69_37n	1	known	missense	c.757	p.E253K	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EIF2S3	HGNC	ENSG00000130741	69	0	0	37	32	46.38	-	-	-	A	24082437	G	A	24082437	3	1	845	1	0	0	0	0	1	0	0	0	5046	943	33	2	783	2	EIF2S3	23	24082437	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09		24082437	131188123	86	70387										
SMC1A	0	genome.wustl.edu	37	chrX	53436124	53436124	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gttcagctccttattgatttCatcaatacgccgcttggcca	7	12	3	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	53436124	53436124	C	A	SNP	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	nonsense	c.1414	p.E472*	1.000	pfam_RecF/RecN/SMC,prints_Tropomyosin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	64	0	0	54	7	11.48	-	-	-	A	53436124	C	A	53436124	4	1	845	1	0	0	0	0	0	1	0	0	14870	835	29	2	2355	2	SMC1A	23	53436124	Nonsense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	29353687	53436124	101834436	87	70388										
AR	0	genome.wustl.edu	37	chrX	66863184	66863184	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	gatctgtggagatgaagcttCtgggtgtcactatggagctc	14	7	3	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	66863184	66863184	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	missense	c.1703	p.S568F	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	144	0	0	77	21	21.43	-	-	-	T	66863184	C	T	66863184	3	4	845	1	0	0	0	0	1	0	0	0	838	913	32	2	1733	2	AR	23	66863184	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	13427060	66863184	88407376	88	70389										
LPAR4	0	genome.wustl.edu	37	chrX	78010427	78010427	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	caaattcaagcctcagacccAggttgggcaatgctactgcc	9	13	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	78010427	78010427	A	T	SNP	LPAR4	ENST00000373301	human	ensembl	69_37n	1	known	missense	c.61	p.R21W	0.998	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2Y5_purnocptor,prints_P2_purnocptor	-	no_errors	LPAR4	HGNC	ENSG00000147145	128	0	0	77	35	31.25	-	-	-	T	78010427	A	T	78010427	3	4	845	1	0	0	0	0	1	0	0	0	8973	179	7	5	63	5	LPAR4	23	78010427	Missense_Mutation	SNP	A	TCGA-E9-A1R4-01A-21D-A14G-09	11147243	78010427	77260133	89	70390										
ITM2A	0	genome.wustl.edu	37	chrX	78619023	78619023	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tacatctcccagaggagcccTctttttcctgggtggcaact	9	13	2	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	78619023	78619023	T	A	SNP	ITM2A	ENST00000373298	human	ensembl	69_37n	-1	known	missense	c.140	p.E47V	0.822	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2A	HGNC	ENSG00000078596	43	0	0	29	9	23.68	-	-	-	A	78619023	T	A	78619023	3	1	845	1	0	0	0	0	1	0	0	0	7966	1551	54	5	671	5	ITM2A	23	78619023	Missense_Mutation	SNP	T	TCGA-E9-A1R4-01A-21D-A14G-09	608596	78619023	76651537	90	70391										
GUCY2F	0	genome.wustl.edu	37	chrX	108652304	108652304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	cagtatgtcttctaggctccCtcgggaacagaattctgtca	9	11	4	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	108652304	108652304	C	T	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.1885	p.G629R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	120	0	0	68	15	18.07	-	-	-	T	108652304	C	T	108652304	3	4	845	1	0	0	0	0	1	0	0	0	6949	681	24	4	1485	4	GUCY2F	23	108652304	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	30033281	108652304	46618256	91	70392										
RGAG1	0	genome.wustl.edu	37	chrX	109694516	109694516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	tacacagccagtgccagctcCcagctctgaggcaatgtccc	9	16	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	109694516	109694516	C	T	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.671	p.P224L	0.167	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	73	0	0	45	20	30.77	-	-	-	T	109694516	C	T	109694516	3	4	845	1	0	0	0	0	1	0	0	0	13357	623	22	4	673	4	RGAG1	23	109694516	Missense_Mutation	SNP	C	TCGA-E9-A1R4-01A-21D-A14G-09	1042212	109694516	45576044	92	70393										
DOCK11	0	genome.wustl.edu	37	chrX	117819732	117819732	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	caattagtggtacatcaagtGaccgaggttatggttcccca	10	9	1	1			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	117819732	117819732	G	A	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.6184	p.D2062N	0.999	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	113	0	0	89	12	11.88	-	-	-	A	117819732	G	A	117819732	3	1	845	1	0	0	0	0	1	0	0	0	4721	1290	45	2	6394	2	DOCK11	23	117819732	Missense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	8125216	117819732	37450828	93	70394										
ATP11C	0	genome.wustl.edu	37	chrX	138880454	138880454	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.393617021276596	37	1.76420129723819e-12	3.66313823163138	4.08390410958904	3.42270058708415	0.205005506887525	0.776190476190475	27	ttcaacagcagaacgtttctGagatttcccttggtagttca	8	9	3	2			TCGA-E9-A1R4-01A-21D-A14G-09	TCGA-E9-A1R4-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15d9c916-a12e-48a0-8a0f-8c240c54bd37	769c4e3f-5ee1-4a17-840e-84cfdba07434	X	138880454	138880454	G	A	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	nonsense	c.844	p.Q282*	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	150	0	0	110	26	19.12	-	-	-	A	138880454	G	A	138880454	4	1	845	1	0	0	0	0	0	1	0	0	1125	1299	45	2	2701	2	ATP11C	23	138880454	Nonsense_Mutation	SNP	G	TCGA-E9-A1R4-01A-21D-A14G-09	21060722	138880454	16390106	94	70395										
FAM63A	0	genome.wustl.edu	37	chr1	150969810	150969810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	cttcggcctctgccgacgctCcccggctgggcgtccagatg	13	17	1	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	150969810	150969810	C	T	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.1507	p.E503K	0.966	NULL	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	56	0	0	12	57	82.61	-	-	-	T	150969810	C	T	150969810	3	4	846	1	0	0	0	0	1	0	0	0	5641	864	30	2	50	2	FAM63A	1	150969810	Missense_Mutation	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		150969810	98280811	1	70396										
GLUL	0	genome.wustl.edu	37	chr1	182355487	182355487	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	catgccaaaccaggggtgctGgttgctcaccatgtccatta	10	12	1	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	182355487	182355487	G	A	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	nonsense	c.379	p.Q127*	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	113	0	0	131	25	16.03	-	-	-	A	182355487	G	A	182355487	4	1	846	1	0	0	0	0	0	1	0	0	6530	1357	47	4	758	4	GLUL	1	182355487	Nonsense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	31385677	182355487	66895134	2	70397										
LHX9	0	genome.wustl.edu	37	chr1	197890707	197890707	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctggccctgccttacttcaaCggtacgggcaccgtgcagaa	11	14	1	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	197890707	197890707	C	T	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	1	known	silent	c.651	p.N217	0.547	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	35	0	0	28	5	15.15	-	-	-	T	197890707	C	T	197890707	2	4	846	1	0	0	0	0	0	0	0	1	8832	535	19	1		1	LHX9	1	197890707	Silent	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09	15535220	197890707	51359914	3	70398										
ENAH	0	genome.wustl.edu	37	chr1	225702347	225702347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	caattgcagctgcaagtccaGttaaagggcgattgtcttct	10	9	2	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	225702347	225702347	G	A	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.1169	p.T390I	1.000	NULL	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	35	0	0	25	25	50	-	-	-	A	225702347	G	A	225702347	3	1	846	1	0	0	0	0	1	0	0	0	5148	1029	36	4	642	4	ENAH	1	225702347	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	27811640	225702347	23548274	4	70399										
BSN	0	genome.wustl.edu	37	chr3	49689363	49689363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	aagactctgctgagtggaggCgccggagagagcagcaggac	17	9	1	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	49689363	49689363	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.2374	p.R792C	0.379	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	53	0	0	14	7	33.33	-	-	-	T	49689363	C	T	49689363	3	4	846	1	0	0	0	0	1	0	0	0	1538	768	27	1	2392	1	BSN	3	49689363	Missense_Mutation	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		49689363	148333067	5	70400										
PLXNA1	0	genome.wustl.edu	37	chr3	126736504	126736504	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	cccagctccccactcatcctCaaggtgggtcaccattgccc	7	19	3	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	126736504	126736504	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	silent	c.3513	p.L1171	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	84	0	0	21	12	36.36	-	-	-	T	126736504	C	T	126736504	2	4	846	1	0	0	0	0	0	0	0	1	12193	813	29	2		2	PLXNA1	3	126736504	Silent	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09	77047141	126736504	71285926	6	70401										
DNAJC13	0	genome.wustl.edu	37	chr3	132213003	132213004	+	In_Frame_Ins	INS	-	-	CTT													0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	taaggttaagcttctaaaagINSatacccttgatgcctggaag							TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	132213003	132213004	-	CTT	INS	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	in_frame_ins	c.3841_3842	p.D1281in_frame_insAY	1.000:1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	90	0	0	61	28	31.46	-	-	-	CTT	132213004	-	CTT	132213003	7	5	846	1	0	1	1	0	0	0	0	0	4667	942	33	0	3971	0	DNAJC13	3	132213003	In_Frame_Ins	INS	-	TCGA-E9-A1R5-01A-11D-A14K-09	5476499	132213003	65809427	7	70402										
PIK3CA	0	genome.wustl.edu	37	chr3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctttgttttttaaggaacacTgtccattggcatggggaaat	10	6	0	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	178927980	178927980	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1258	p.C420R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	114	0	0	54	56	50.91	-	-	-	C	178927980	T	C	178927980	3	2	846	1	0	0	0	0	1	0	0	0	11987	1580	55	5	1284	5	PIK3CA	3	178927980	Missense_Mutation	SNP	T	TCGA-E9-A1R5-01A-11D-A14K-09	46714977	178927980	19094450	8	70403										
TRIM36	0	genome.wustl.edu	37	chr5	114482989	114482989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	tagtttccaaagtgaagtttCgaaacagaccattgattcct	7	8	0	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	5	114482989	114482989	C	T	SNP	TRIM36	ENST00000282369	human	ensembl	69_37n	-1	known	missense	c.401	p.R134Q	1.000	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM36	HGNC	ENSG00000152503	173	0	0	127	62	32.8	-	-	-	T	114482989	C	T	114482989	3	4	846	1	0	0	0	0	1	0	0	0	16606	884	31	1	1817	1	TRIM36	5	114482989	Missense_Mutation	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		114482989	66432271	9	70404										
COL1A2	0	genome.wustl.edu	37	chr7	94041434	94041434	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctggaaaagaaggtcctgtcGtaagtattgctcattttcca	9	8	1	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	7	94041434	94041434	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	splice_site	c.1404+1	e24+1	1.000	-	-	-	no_errors	COL1A2	HGNC	ENSG00000164692	210	0	0	136	22	13.92	-	-	-	A	94041434	G	A	94041434	5	1	846	1	0	0	0	0	0	0	1	0	3708	1159	40	1	1499	1	COL1A2	7	94041434	Splice_Site	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		94041434	65097229	10	70405										
PI15	0	genome.wustl.edu	37	chr8	75761435	75761435	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gttatgggggatcttgtactGacaatctgtgttttccagga	12	6	2	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	75761435	75761435	G	C	SNP	PI15	ENST00000260113	human	ensembl	69_37n	1	known	missense	c.724	p.D242H	1.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558	188	0	0	88	81	47.93	-	-	-	C	75761435	G	C	75761435	3	2	846	1	0	0	0	0	1	0	0	0	11942	1290	45	2	742	2	PI15	8	75761435	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		75761435	70602587	11	70406										
MELK	0	genome.wustl.edu	37	chr9	36594707	36594707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gacccgggttgtcttccgtcAgatagtatctgctgttgctt	11	10	3	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	36594707	36594707	A	G	SNP	MELK	ENST00000298048	human	ensembl	69_37n	1	known	missense	c.344	p.Q115R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304	148	0	0	87	46	34.59	-	-	-	G	36594707	A	G	36594707	3	3	846	1	0	0	0	0	1	0	0	0	9541	188	7	5	358	5	MELK	9	36594707	Missense_Mutation	SNP	A	TCGA-E9-A1R5-01A-11D-A14K-09		36594707	104618724	12	70407										
HSD17B3	0	genome.wustl.edu	37	chr9	99064321	99064321	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctggagaatctcacgcacttCgccaggcaggccaggcacac	11	15	1	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	99064321	99064321	C	T	SNP	HSD17B3	ENST00000375263	human	ensembl	69_37n	-1	known	silent	c.66	p.A22	0.384	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B3	HGNC	ENSG00000130948	136	1	0.72	54	27	33.33	-	-	-	T	99064321	C	T	99064321	2	4	846	1	0	0	0	0	0	0	0	1	7436	871	31	1		1	HSD17B3	9	99064321	Silent	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09	62469614	99064321	42149110	13	70408										
SPTAN1	0	genome.wustl.edu	37	chr9	131371190	131371190	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	tctgcaggcctttgccgaccAgctcatcgctgccggccatt	10	16	2	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	131371190	131371190	A	C	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.4529	p.Q1510P	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	85	0	0	48	8	14.29	-	-	-	C	131371190	A	C	131371190	3	2	846	1	0	0	0	0	1	0	0	0	15208	188	7	5	4663	5	SPTAN1	9	131371190	Missense_Mutation	SNP	A	TCGA-E9-A1R5-01A-11D-A14K-09	32306869	131371190	9842241	14	70409										
OR4C13	0	genome.wustl.edu	37	chr11	49974275	49974275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gatgtatgactcaagtctttGgagaacattttttcagaggt	10	5	3	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	49974275	49974275	G	A	SNP	OR4C13	ENST00000555099	human	ensembl	69_37n	1	known	missense	c.301	p.G101R	0.251	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C13	HGNC	ENSG00000258817	146	0	0	107	40	27.21	-	-	-	A	49974275	G	A	49974275	3	1	846	1	0	0	0	0	1	0	0	0	11120	1349	47	4	303	4	OR4C13	11	49974275	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		49974275	85032241	15	70410										
KDELC2	0	genome.wustl.edu	37	chr11	108361856	108361856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	tatccggaccaactctttagGtgaaagagatttgactacga	9	8	1	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	108361856	108361856	G	T	SNP	KDELC2	ENST00000323468	human	ensembl	69_37n	-1	known	missense	c.241	p.P81T	0.160	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC2	HGNC	ENSG00000178202	71	0	0	48	22	31.43	-	-	-	T	108361856	G	T	108361856	3	4	846	1	0	0	0	0	1	0	0	0	8172	1261	44	4	1310	4	KDELC2	11	108361856	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	58387581	108361856	26644660	16	70411										
SLC2A3	0	genome.wustl.edu	37	chr12	8086481	8086481	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gtagcaactgtgatggcaaaTatcagagctggggtgacctg	14	7	1	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	12	8086481	8086481	T	G	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	silent	c.33	p.I11	0.988	superfamily_MFS_dom_general_subst_transpt,prints_Glc_transpt_3,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	227	0	0	142	51	26.42	-	-	-	G	8086481	T	G	8086481	2	3	846	1	0	0	0	0	0	0	0	1	14634	1396	49	5		5	SLC2A3	12	8086481	Silent	SNP	T	TCGA-E9-A1R5-01A-11D-A14K-09		8086481	125765414	17	70412										
RNF41	0	genome.wustl.edu	37	chr12	56607765	56607765	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	tactggctcctccaagactcCactgcaaatagggcagataa	8	12	0	2			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	12	56607765	56607765	C	A	SNP	RNF41	ENST00000345093	human	ensembl	69_37n	-1	known	nonsense	c.67	p.G23*	1.000	pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,smart_Znf_RING,pfscan_Znf_RING	pfam_USP8_interacting,pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,superfamily_TRAF-like,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	RNF41	HGNC	ENSG00000181852	189	0	0	97	47	32.64	-	-	-	A	56607765	C	A	56607765	4	1	846	1	0	0	0	0	0	1	0	0	13580	603	21	4	906	4	RNF41	12	56607765	Nonsense_Mutation	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09	48521284	56607765	77244130	18	70413										
ABCD4	0	genome.wustl.edu	37	chr14	74758989	74758989	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctctgccagcccgctactcaCgtgtccaagccccactcgct	7	20	2	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	14	74758989	74758989	C	T	SNP	ABCD4	ENST00000356924	human	ensembl	69_37n	-1	known	splice_site	c.1118+1	e11+1	1.000	-	-	-	no_errors	ABCD4	HGNC	ENSG00000119688	63	0	0	29	10	25.64	-	-	-	T	74758989	C	T	74758989	5	4	846	1	0	0	0	0	0	0	1	0	63	550	19	1	737	1	ABCD4	14	74758989	Splice_Site	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		74758989	32590551	19	70414										
GALC	0	genome.wustl.edu	37	chr14	88454828	88454828	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ataatccaatatctgagaacGatagggctctgggtaattta	9	6	2	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	14	88454828	88454828	G	C	SNP	GALC	ENST00000261304	human	ensembl	69_37n	-1	known	missense	c.235	p.R79G	1.000	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983	107	0	0	60	23	27.71	-	-	-	C	88454828	G	C	88454828	3	2	846	1	0	0	0	0	1	0	0	0	6251	1058	37	3	1949	3	GALC	14	88454828	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	13695839	88454828	18894712	20	70415										
MPI	0	genome.wustl.edu	37	chr15	75190052	75190052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gaaggacctgctgatattccGtgcctgctgtctgctgtaaa	11	10	1	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	15	75190052	75190052	G	A	SNP	MPI	ENST00000352410	human	ensembl	69_37n	1	known	missense	c.1253	p.R418H	1.000	superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase	pfam_Man6P_Isoase-1,superfamily_RmlC_Cupin,pirsf_Mannose-6-P_Isomerase,prints_Mannose-6-P_Isomerase,tigrfam_Man6P_Isoase-1	-	no_errors	MPI	HGNC	ENSG00000178802	192	0	0	65	39	37.5	-	-	-	A	75190052	G	A	75190052	3	1	846	1	0	0	0	0	1	0	0	0	9801	1145	40	1	1283	1	MPI	15	75190052	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		75190052	27341340	21	70416										
CLCN7	0	genome.wustl.edu	37	chr16	1497552	1497552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	cgctgtaccaggcccaggttGgaccgctccacaaacacctg	10	16	0	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	16	1497552	1497552	G	T	SNP	CLCN7	ENST00000565596	human	ensembl	69_37n	-1	putative	missense	c.209	p.P70Q	0.007	NULL	pfam_Cysta_beta_synth_core,smart_Cysta_beta_synth_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CLCN7	HGNC	ENSG00000103249	15	0	0	9	4	30.77	-	-	-	T	1497552	G	T	1497552	3	4	846	1	0	0	0	0	1	0	0	0	3498	1335	47	4	338	4	CLCN7	16	1497552	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		1497552	88857201	22	70417										
MYH2	0	genome.wustl.edu	37	chr17	10432037	10432037	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gagaccgtttctacattactAgcaaggtcatcaatctccat	6	11	4	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	10432037	10432037	A	G	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.3714	p.A1238	0.074	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	115	0	0	70	17	19.54	-	-	-	G	10432037	A	G	10432037	2	3	846	1	0	0	0	0	0	0	0	1	10107	407	15	5		5	MYH2	17	10432037	Silent	SNP	A	TCGA-E9-A1R5-01A-11D-A14K-09		10432037	70763173	23	70418										
CCDC144A	0	genome.wustl.edu	37	chr17	16638041	16638041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gaaagaaaaggatctctttcAtgaagattgcatgttgcagg	11	5	2	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	16638041	16638041	A	T	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.2456	p.H819L	0.170	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	57	0	0	35	11	23.91	-	-	-	T	16638041	A	T	16638041	3	4	846	1	0	0	0	0	1	0	0	0	2802	217	8	5	2502	5	CCDC144A	17	16638041	Missense_Mutation	SNP	A	TCGA-E9-A1R5-01A-11D-A14K-09	6206004	16638041	64557169	24	70419										
ERBB2	0	genome.wustl.edu	37	chr17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	aagccaacaaagaaatcttaGacgtaagcccctccaccctc	5	15	1	2			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	37880261	37880261	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2305	p.D769Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	151	1	0.66	69	71	50.71	-	-	-	T	37880261	G	T	37880261	3	4	846	1	0	0	0	0	1	0	0	0	5243	942	33	2	2379	2	ERBB2	17	37880261	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	21242220	37880261	43314949	25	70420										
MED13	0	genome.wustl.edu	37	chr17	60088032	60088032	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ctttgggaacttgtaatactTccaggctatattggcttcat	8	8	1	0			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	60088032	60088032	T	A	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	nonsense	c.1846	p.K616*	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	184	0	0	189	53	21.81	-	-	-	A	60088032	T	A	60088032	4	1	846	1	0	0	0	0	0	1	0	0	9501	1792	62	5	4766	5	MED13	17	60088032	Nonsense_Mutation	SNP	T	TCGA-E9-A1R5-01A-11D-A14K-09	22207771	60088032	21107178	26	70421										
WIPI1	0	genome.wustl.edu	37	chr17	66424974	66424974	+	Frame_Shift_Del	DEL	G	G	-													0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	aaagcagtctcttcacctgtGggttttgattaagacacact							TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	66424974	66424974	G	-	DEL	WIPI1	ENST00000262139	human	ensembl	69_37n	-1	known	frame_shift_del	c.1069	p.H357fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540	144	0	0	129	51	27.87	-	-	-	-	66424974	G	-	66424974	7	5	846	1	0	1	0	1	0	0	0	0	17467	1348	47	0	287	0	WIPI1	17	66424974	Frame_Shift_Del	DEL	G	TCGA-E9-A1R5-01A-11D-A14K-09	6336942	66424974	14770236	27	70422										
ATCAY	0	genome.wustl.edu	37	chr19	3907867	3907867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	catcggggagcaagagcaccGtatagacctgcacatgatcc	11	12	0	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	3907867	3907867	G	A	SNP	ATCAY	ENST00000301260	human	ensembl	69_37n	1	known	missense	c.494	p.R165H	1.000	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	ATCAY	HGNC	ENSG00000167654	42	0	0	20	11	35.48	-	-	-	A	3907867	G	A	3907867	3	1	846	1	0	0	0	0	1	0	0	0	1081	1145	40	1	508	1	ATCAY	19	3907867	Missense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		3907867	55221116	28	70423										
NDUFA7	0	genome.wustl.edu	37	chr19	8381508	8381508	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ttgtggctaggacccacaggGagcttgggaggaggctgagt	18	7	0	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	8381508	8381508	G	A	SNP	NDUFA7	ENST00000301457	human	ensembl	69_37n	-1	known	silent	c.123	p.L41	0.998	pfam_NADH-UbQ_OxRdtase_B14.5a_su	pfam_NADH-UbQ_OxRdtase_B14.5a_su	-	no_errors	NDUFA7	HGNC	ENSG00000167774	77	0	0	45	9	16.67	-	-	-	A	8381508	G	A	8381508	2	1	846	1	0	0	0	0	0	0	0	1	10342	1161	41	2		2	NDUFA7	19	8381508	Silent	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09	4473641	8381508	50747475	29	70424										
ZNF439	0	genome.wustl.edu	37	chr19	11979122	11979122	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	agagaaaccctatgagtgtaAgcaatgtgggaaagccttca	11	7	1	2			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	11979122	11979122	A	T	SNP	ZNF439	ENST00000304030	human	ensembl	69_37n	1	known	missense	c.1238	p.K413M	0.208	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291	115	1	0.86	65	32	32.99	-	-	-	T	11979122	A	T	11979122	3	4	846	1	0	0	0	0	1	0	0	0	18007	72	3	5	1248	5	ZNF439	19	11979122	Missense_Mutation	SNP	A	TCGA-E9-A1R5-01A-11D-A14K-09	3597614	11979122	47149861	30	70425										
RBL1	0	genome.wustl.edu	37	chr20	35627233	35627233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	gtcatcattttcttgacagaCgcgtttggcaggggattctg	12	8	4	2			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	20	35627233	35627233	C	A	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.3136	p.V1046F	0.999	pfam_Rb_C	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	343	1	0.29	250	79	24.01	-	-	-	A	35627233	C	A	35627233	3	1	846	1	0	0	0	0	1	0	0	0	13192	536	19	3	74	3	RBL1	20	35627233	Missense_Mutation	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		35627233	27398287	31	70426										
CSTF1	0	genome.wustl.edu	37	chr20	54974292	54974292	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	acttttgagaaagcacatgaCggtgctgaagtttgttctgc	11	7	1	3			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	20	54974292	54974292	C	T	SNP	CSTF1	ENST00000217109	human	ensembl	69_37n	1	known	silent	c.915	p.D305	0.159	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CSTF1	HGNC	ENSG00000101138	182	1	0.55	134	37	21.64	-	-	-	T	54974292	C	T	54974292	2	4	846	1	0	0	0	0	0	0	0	1	4015	535	19	1		1	CSTF1	20	54974292	Silent	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09	19347059	54974292	8051228	32	70427										
APOBEC3D	0	genome.wustl.edu	37	chr22	39418878	39418878	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	ttctacgacaactttgaaaaCgaacccatcctctatggtcg	6	12	2	1			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	22	39418878	39418878	C	T	SNP	APOBEC3D	ENST00000216099	human	ensembl	69_37n	1	known	silent	c.69	p.N23	0.000	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3D	HGNC	ENSG00000243811	176	0	0	77	43	35.83	-	-	-	T	39418878	C	T	39418878	2	4	846	1	0	0	0	0	0	0	0	1	794	535	19	1		1	APOBEC3D	22	39418878	Silent	SNP	C	TCGA-E9-A1R5-01A-11D-A14K-09		39418878	11885688	33	70428										
DMD	0	genome.wustl.edu	37	chrX	31792301	31792301	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0882352941176471	3	0.842220722787211	1.1364950838635	3.5989010989011	0.846800258564964	1	1	0	tgtcaccagagtaacagtctGagtaggagctaaaatatttt	9	6	2	2			TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	X	31792301	31792301	G	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	nonsense	c.7318	p.Q2440*	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	69	0	0	58	9	13.43	-	-	-	A	31792301	G	A	31792301	4	1	846	1	0	0	0	0	0	1	0	0	4616	1299	45	2	4003	2	DMD	23	31792301	Nonsense_Mutation	SNP	G	TCGA-E9-A1R5-01A-11D-A14K-09		31792301	123478259	34	70429										
TTLL7	0	genome.wustl.edu	37	chr1	84385515	84385515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	tatcttcaggaggataaattCgtctacaacaaaatcagata	6	7	4	1			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	84385515	84385515	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.1367	p.R456Q	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	16	0	0	18	9	33.33	-	-	-	T	84385515	C	T	84385515	3	4	847	1	0	0	0	0	1	0	0	0	16829	884	31	1	1332	1	TTLL7	1	84385515	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		84385515	164865106	1	70430										
LRRC8C	0	genome.wustl.edu	37	chr1	90179621	90179621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	aaaacctcaaggtcttgagcGtcaagtttgatgacatgagg	11	7	3	4			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	90179621	90179621	G	A	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.1492	p.V498I	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	51	0	0	40	8	16.67	-	-	-	A	90179621	G	A	90179621	3	1	847	1	0	0	0	0	1	0	0	0	9089	1145	40	1	1498	1	LRRC8C	1	90179621	Missense_Mutation	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09	5794106	90179621	159071000	2	70431										
CDC14A	0	genome.wustl.edu	37	chr1	100960455	100960455	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gtgccttaaaaagtcagagaCagccacgtacctcaccatcc	7	14	2	1			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	100960455	100960455	C	T	SNP	CDC14A	ENST00000361544	human	ensembl	69_37n	1	known	nonsense	c.1219	p.Q407*	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335	84	0	0	40	31	43.66	-	-	-	T	100960455	C	T	100960455	4	4	847	1	0	0	0	0	0	1	0	0	3085	479	17	4	1280	4	CDC14A	1	100960455	Nonsense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09	10780834	100960455	148290166	3	70432										
OR2T35	0	genome.wustl.edu	37	chr1	248801953	248801954	+	Frame_Shift_Ins	INS	-	-	T													0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	ataagcagcatcagcacgcaINSgcaggcatacatcagggtct							TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	248801953	248801954	-	T	INS	OR2T35	ENST00000317450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.607_606	p.C202fs	0.101:0.095	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T35	HGNC	ENSG00000177151	19	0	0	7	3	30	-	-	-	T	248801954	-	T	248801953	7	5	847	1	0	1	1	0	0	0	0	0	11099	188	7	0	368	0	OR2T35	1	248801953	Frame_Shift_Ins	INS	-	TCGA-E9-A1R6-01A-11D-A14G-09	147841498	248801953	448668	4	70433										
PTMA	0	genome.wustl.edu	37	chr2	232576068	232576070	+	In_Frame_Del	DEL	AGA	AGA	-													0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	ccttttgaaggacttaaaggAgaagaaggaagttgtggaag							TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	2	232576068	232576070	AGA	-	DEL	PTMA	ENST00000341369	human	ensembl	69_37n	1	known	in_frame_del	c.56_58	p.K21in_frame_del	1.000:1.000:1.000	pfam_Pro/parathymosin	pfam_Pro/parathymosin	-	no_errors	PTMA	HGNC	ENSG00000187514	35	0	0	30	10	25	-	-	-	-	232576070	AGA	-	232576068	7	5	847	1	0	1	0	1	0	0	0	0	12847	304	11	0	62	0	PTMA	2	232576068	In_Frame_Del	DEL	AGA	TCGA-E9-A1R6-01A-11D-A14G-09		232576068	10623305	5	70434										
KIF1A	0	genome.wustl.edu	37	chr2	241708612	241708612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	catggccacacccatctcggCcagcagggcttccctggggg	13	16	1	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	2	241708612	241708612	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.1435	p.A479T	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	47	0	0	25	10	28.57	-	-	-	T	241708612	C	T	241708612	3	4	847	1	0	0	0	0	1	0	0	0	8335	739	26	4	3792	4	KIF1A	2	241708612	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09	9132544	241708612	1490761	6	70435										
GK2	0	genome.wustl.edu	37	chr4	80327715	80327715	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	atggcacacccgagatatatCttgctccaattagcattacc	6	12	1	1			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	4	80327715	80327715	C	G	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	missense	c.1640	p.R547T	1.000	NULL	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	65	0	0	46	46	50	-	-	-	G	80327715	C	G	80327715	3	3	847	1	0	0	0	0	1	0	0	0	6473	913	32	2	25	2	GK2	4	80327715	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		80327715	110826561	7	70436										
MAP3K1	0	genome.wustl.edu	37	chr5	56171058	56171059	+	Frame_Shift_Ins	INS	-	-	A													0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	tcccagaccagtatctcaggINSagatgtggtggaggcatgct							TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	5	56171058	56171059	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.1886_1887	p.D630fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	70	0	0	46	36	43.9	-	-	-	A	56171059	-	A	56171058	7	5	847	1	0	1	1	0	0	0	0	0	9314	1174	41	0	1924	0	MAP3K1	5	56171058	Frame_Shift_Ins	INS	-	TCGA-E9-A1R6-01A-11D-A14G-09		56171058	124744202	8	70437										
MAP3K1	0	genome.wustl.edu	37	chr5	56177011	56177014	+	Frame_Shift_Del	DEL	ATAG	ATAG	-													0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	ttcttggccgcctttgtcttAtagatagactgttgttggaa							TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	ATAG	ATAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	5	56177011	56177014	ATAG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.2281_2284	p.R763fs	0.994:0.998:0.969:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	166	0	0	114	61	34.46	-	-	-	-	56177014	ATAG	-	56177011	7	5	847	1	0	1	0	1	0	0	0	0	9314	449	16	0	2331	0	MAP3K1	5	56177011	Frame_Shift_Del	DEL	ATAG	TCGA-E9-A1R6-01A-11D-A14G-09	5953	56177011	124738249	9	70438										
KIAA0408	0	genome.wustl.edu	37	chr6	127767979	127767979	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	ggcatgtgggcattggttttCcaaataccggacacatcgtt	11	9	0	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	6	127767979	127767979	C	A	SNP	KIAA0408	ENST00000483725	human	ensembl	69_37n	-1	novel	missense	c.1485	p.W495C	0.984	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367	90	0	0	66	23	25.84	-	-	-	A	127767979	C	A	127767979	3	1	847	1	0	0	0	0	1	0	0	0	8226	856	30	2	607	2	KIAA0408	6	127767979	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		127767979	43347088	10	70439										
MED23	0	genome.wustl.edu	37	chr6	131925359	131925359	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	aagactctatttccatatagAccaataaacgactgtaagtt	5	8	1	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	6	131925359	131925359	A	T	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1733	p.V578D	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	88	0	0	21	50	70.42	-	-	-	T	131925359	A	T	131925359	3	4	847	1	0	0	0	0	1	0	0	0	9512	275	10	5	2458	5	MED23	6	131925359	Missense_Mutation	SNP	A	TCGA-E9-A1R6-01A-11D-A14G-09	4157380	131925359	39189708	11	70440										
ZNF800	0	genome.wustl.edu	37	chr7	127014790	127014790	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gatgtaggtgcaacttcatcTgtaacaatctcaacaggagg	10	8	3	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	7	127014790	127014790	T	C	SNP	ZNF800	ENST00000265827	human	ensembl	69_37n	-1	known	silent	c.600	p.T200	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405	85	0	0	58	21	26.58	-	-	-	C	127014790	T	C	127014790	2	2	847	1	0	0	0	0	0	0	0	1	18262	1567	55	5		5	ZNF800	7	127014790	Silent	SNP	T	TCGA-E9-A1R6-01A-11D-A14G-09		127014790	32123873	12	70441										
CNBD1	0	genome.wustl.edu	37	chr8	88365983	88365983	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	attaccaaaaaagaagttgaGatggcaatcattgaagataa	8	4	1	4			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	8	88365983	88365983	G	A	SNP	CNBD1	ENST00000521593	human	ensembl	69_37n	1	putative	missense	c.182	p.R61K	0.558	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNBD1	HGNC	ENSG00000176571	87	0	0	54	50	48.08	-	-	-	A	88365983	G	A	88365983	3	1	847	1	0	0	0	0	1	0	0	0	3621	933	33	2	1310	2	CNBD1	8	88365983	Missense_Mutation	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09		88365983	57998039	13	70442										
KCNA4	0	genome.wustl.edu	37	chr11	30033317	30033317	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gctatgccccttgcaggactGgagctctctggatattcaaa	10	11	2	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	11	30033317	30033317	G	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	silent	c.909	p.S303	0.999	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	30	0	0	8	25	75.76	-	-	-	T	30033317	G	T	30033317	2	4	847	1	0	0	0	0	0	0	0	1	8059	1335	47	4		4	KCNA4	11	30033317	Silent	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09		30033317	104973199	14	70443										
NAALADL1	0	genome.wustl.edu	37	chr11	64822123	64822123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	ccaggagttgggaaaggtttCgtcgggtgagctcagcccat	15	9	1	1			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	11	64822123	64822123	C	T	SNP	NAALADL1	ENST00000358658	human	ensembl	69_37n	-1	known	missense	c.691	p.E231K	0.413	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060	47	0	0	57	7	10.94	-	-	-	T	64822123	C	T	64822123	3	4	847	1	0	0	0	0	1	0	0	0	10201	893	31	1	1587	1	NAALADL1	11	64822123	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09	34788806	64822123	70184393	15	70444										
INTS6	0	genome.wustl.edu	37	chr13	51961567	51961567	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	caaaaagactctggaacaggCcaatgacctataggaacccc	8	12	1	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	13	51961567	51961567	C	A	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.849	p.W283C	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	81	0	0	35	20	36.36	-	-	-	A	51961567	C	A	51961567	3	1	847	1	0	0	0	0	1	0	0	0	7836	740	26	4	1862	4	INTS6	13	51961567	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		51961567	63208311	16	70445										
AP1G2	0	genome.wustl.edu	37	chr14	24028968	24028968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gtggagacagttactgccacGattccacaggcaagttgttc	11	10	0	1			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	14	24028968	24028968	G	A	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.2348	p.S783L	0.997	superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	44	0	0	18	4	18.18	-	-	-	A	24028968	G	A	24028968	3	1	847	1	0	0	0	0	1	0	0	0	734	1059	37	1	13	1	AP1G2	14	24028968	Missense_Mutation	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09		24028968	83320572	17	70446										
RYR3	0	genome.wustl.edu	37	chr15	33944994	33944994	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	cagagatcaaatcggagcaaCgtggacctggagatcggctg	14	9	1	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	15	33944994	33944994	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.4218	p.N1406	0.980	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	80	0	0	65	21	24.42	-	-	-	T	33944994	C	T	33944994	2	4	847	1	0	0	0	0	0	0	0	1	13856	535	19	1		1	RYR3	15	33944994	Silent	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		33944994	68586398	18	70447										
DHRS7C	0	genome.wustl.edu	37	chr17	9674897	9674897	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gaaggtgcggacgtacacggCggccttggggatggggttgg	21	7	0	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	17	9674897	9674897	C	A	SNP	DHRS7C	ENST00000330255	human	ensembl	69_37n	-1	known	missense	c.847	p.A283S	0.997	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544	44	0	0	20	14	41.18	-	-	-	A	9674897	C	A	9674897	3	1	847	1	0	0	0	0	1	0	0	0	4533	768	27	3	95	3	DHRS7C	17	9674897	Missense_Mutation	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		9674897	71520313	19	70448										
ZNF440	0	genome.wustl.edu	37	chr19	11942981	11942981	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	cttacaagttttcaaacacaCgtaagattgcactctggaga	7	9	2	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	19	11942981	11942981	C	T	SNP	ZNF440	ENST00000304060	human	ensembl	69_37n	1	known	silent	c.990	p.H330	0.081	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295	73	0	0	76	16	17.39	-	-	-	T	11942981	C	T	11942981	2	4	847	1	0	0	0	0	0	0	0	1	18009	535	19	1		1	ZNF440	19	11942981	Silent	SNP	C	TCGA-E9-A1R6-01A-11D-A14G-09		11942981	47186002	20	70449										
TFE3	0	genome.wustl.edu	37	chrX	48895568	48895568	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	tgcagtcctgtggtgcctccGggcagatagctgagcatttc	13	11	0	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	48895568	48895568	G	A	SNP	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	silent	c.852	p.P284	0.111	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	40	0	0	52	12	18.75	-	-	-	A	48895568	G	A	48895568	2	1	847	1	0	0	0	0	0	0	0	1	15895	1103	39	1		1	TFE3	23	48895568	Silent	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09		48895568	106374992	21	70450										
CACNA1F	0	genome.wustl.edu	37	chrX	49083475	49083475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	tcctccatgtccagctcttcGgcttgagtgatccagtccag	9	14	1	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	49083475	49083475	G	A	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.1233	p.A411	0.362	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	28	0	0	25	12	32.43	-	-	-	A	49083475	G	A	49083475	2	1	847	1	0	0	0	0	0	0	0	1	2568	1103	39	1		1	CACNA1F	23	49083475	Silent	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09	187907	49083475	106187085	22	70451										
BRWD3	0	genome.wustl.edu	37	chrX	79979248	79979248	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	aaaatttaaatatgctaaccTtttcgtagtatttactgcat	4	6	0	0			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	79979248	79979248	T	C	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.1649	p.K550R	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	69	0	0	64	17	20.99	-	-	-	C	79979248	T	C	79979248	3	2	847	1	0	0	0	0	1	0	0	0	1534	1623	56	5	3863	5	BRWD3	23	79979248	Missense_Mutation	SNP	T	TCGA-E9-A1R6-01A-11D-A14G-09	30895773	79979248	75291312	23	70452										
PLXNA3	0	genome.wustl.edu	37	chrX	153694159	153694159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0833333333333333	2	0.843743695016429	1.20965309200603	7.86274509803922	0.655228758169935	1	1	0	gatgcacctgagccagaaggGcacccggtgcagccaccccc	12	17	0	2			TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	153694159	153694159	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	missense	c.2501	p.G834D	0.918	pfam_Plexin_repeat,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	19	0	0	7	5	41.67	-	-	-	A	153694159	G	A	153694159	3	1	847	1	0	0	0	0	1	0	0	0	12195	1203	42	4	2547	4	PLXNA3	23	153694159	Missense_Mutation	SNP	G	TCGA-E9-A1R6-01A-11D-A14G-09	73714911	153694159	1576401	24	70453										
UBR4	0	genome.wustl.edu	37	chr1	19439335	19439335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgctgtaggtcatattccaaCaactctttgcgcgaagcaaa	8	10	2	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	19439335	19439335	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	silent	c.11484	p.L3828	0.998	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	36	0	0	41	19	31.67	-	-	-	T	19439335	C	T	19439335	2	4	848	1	0	0	0	0	0	0	0	1	17001	477	17	4		4	UBR4	1	19439335	Silent	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		19439335	229811286	1	70454										
JAK1	0	genome.wustl.edu	37	chr1	65335075	65335075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ccaggacagccatccctagaCactcgttctcaatatcatgt	6	14	2	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	65335075	65335075	C	T	SNP	JAK1	ENST00000342505	human	ensembl	69_37n	-1	known	missense	c.566	p.C189Y	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	59	0	0	26	23	46.94	-	-	-	T	65335075	C	T	65335075	3	4	848	1	0	0	0	0	1	0	0	0	7991	478	17	4	2978	4	JAK1	1	65335075	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	45895740	65335075	183915546	2	70455										
TAF13	0	genome.wustl.edu	37	chr1	109617632	109617632	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ctttagaaaaaagtctctttCttttaccctgtccaccttct	3	12	3	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	109617632	109617632	C	A	SNP	TAF13	ENST00000338366	human	ensembl	69_37n	-1	known	missense	c.83	p.R28I	1.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	TAF13	HGNC	ENSG00000197780	157	0	0	37	37	50	-	-	-	A	109617632	C	A	109617632	3	1	848	1	0	0	0	0	1	0	0	0	15609	913	32	2	303	2	TAF13	1	109617632	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	44282557	109617632	139632989	3	70456										
PVRL4	0	genome.wustl.edu	37	chr1	161059016	161059016	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ggcaagtcctacctgtaaatGatgccagcagtagcagcagc	11	11	0	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	161059016	161059016	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	69_37n	-1	known	missense	c.71	p.S24L	0.554	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PVRL4	HGNC	ENSG00000143217	11	0	0	43	39	47.56	-	-	-	A	161059016	G	A	161059016	3	1	848	1	0	0	0	0	1	0	0	0	12925	1294	45	2	1497	2	PVRL4	1	161059016	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	51441384	161059016	88191605	4	70457										
ATP2B4	0	genome.wustl.edu	37	chr1	203680228	203680228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgggcattgaggaccctgtgCgcccagaggtgagagggtgg	19	8	0	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	203680228	203680228	C	T	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.2023	p.R675C	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	27	0	0	75	11	12.79	-	-	-	T	203680228	C	T	203680228	3	4	848	1	0	0	0	0	1	0	0	0	1146	768	27	1	2065	1	ATP2B4	1	203680228	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	42621212	203680228	45570393	5	70458										
KCTD3	0	genome.wustl.edu	37	chr1	215768802	215768802	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gagtgtggaatgctgtcactCagcactggcaggttagttta	13	7	2	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	215768802	215768802	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	nonsense	c.922	p.Q308*	1.000	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	70	0	0	131	46	25.99	-	-	-	T	215768802	C	T	215768802	4	4	848	1	0	0	0	0	0	1	0	0	8164	827	29	2	960	2	KCTD3	1	215768802	Nonsense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	12088574	215768802	33481819	6	70459										
JMJD4	0	genome.wustl.edu	37	chr1	227921282	227921282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gttgccgtggcggtcccgcaGggcctcttcctgccctgggg	16	15	1	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	227921282	227921282	G	A	SNP	JMJD4	ENST00000366758	human	ensembl	69_37n	-1	known	silent	c.793	p.L265	0.996	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD4	HGNC	ENSG00000081692	8	0	0	49	13	20.97	-	-	-	A	227921282	G	A	227921282	2	1	848	1	0	0	0	0	0	0	0	1	8005	991	35	4		4	JMJD4	1	227921282	Silent	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	12152480	227921282	21329339	7	70460										
AHCTF1	0	genome.wustl.edu	37	chr1	247007193	247007193	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgagaagataaatccgaaacTaattctttcagctgtgcagg	9	7	2	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	247007193	247007193	T	G	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	missense	c.6456	p.L2152F	0.993	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	84	0	0	119	42	26.09	-	-	-	G	247007193	T	G	247007193	3	3	848	1	0	0	0	0	1	0	0	0	408	1519	53	5	383	5	AHCTF1	1	247007193	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09	19085911	247007193	2243428	8	70461										
TPRKB	0	genome.wustl.edu	37	chr2	73957812	73957812	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ctcttcaatgtaaacaattaGaattgaagtgtcatttgctg	7	6	3	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	73957812	73957812	G	C	SNP	TPRKB	ENST00000272424	human	ensembl	69_37n	-1	known	missense	c.316	p.L106V	1.000	pfam_Kinase-bd_CGI-121	pfam_Kinase-bd_CGI-121	-	no_errors	TPRKB	HGNC	ENSG00000144034	83	0	0	21	23	52.27	-	-	-	C	73957812	G	C	73957812	3	2	848	1	0	0	0	0	1	0	0	0	16516	933	33	2	219	2	TPRKB	2	73957812	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		73957812	169241561	9	70462										
TMEM131	0	genome.wustl.edu	37	chr2	98422132	98422132	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ttaccttctgtgagaaggaaTtcataatatttaaactttga	6	5	2	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	98422132	98422132	T	C	SNP	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	missense	c.2090	p.N697S	1.000	pfam_DUF3651_TMEM131	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	46	0	0	17	11	39.29	-	-	-	C	98422132	T	C	98422132	3	2	848	1	0	0	0	0	1	0	0	0	16139	1493	52	5	3649	5	TMEM131	2	98422132	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09	24464320	98422132	144777241	10	70463										
INO80D	0	genome.wustl.edu	37	chr2	206869432	206869432	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gtggcgtggatagggaagtgGaaagaagatgtccatctgcg	17	5	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	206869432	206869432	G	T	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	missense	c.2744	p.S915Y	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	70	0	0	64	27	29.67	-	-	-	T	206869432	G	T	206869432	3	4	848	1	0	0	0	0	1	0	0	0	7803	1174	41	2	343	2	INO80D	2	206869432	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	108447300	206869432	36329941	11	70464										
IQCA1	0	genome.wustl.edu	37	chr2	237240002	237240002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tcatcagggtgttcatttacCttaaagctctcttcttcctc	5	12	5	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	237240002	237240002	C	T	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	silent	c.2373	p.K791	1.000	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	73	0	0	50	20	28.57	-	-	-	T	237240002	C	T	237240002	2	4	848	1	0	0	0	0	0	0	0	1	7856	695	24	4		4	IQCA1	2	237240002	Silent	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	30370570	237240002	5959371	12	70465										
STXBP5L	0	genome.wustl.edu	37	chr3	121137241	121137241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgcgcaacacattcctggacCaggtagtatagaagggatga	12	8	0	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	3	121137241	121137241	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	69_37n	1	known	missense	c.3356	p.P1119L	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin	-	no_errors	STXBP5L	HGNC	ENSG00000145087	47	0	0	22	8	26.67	-	-	-	T	121137241	C	T	121137241	3	4	848	1	0	0	0	0	1	0	0	0	15448	594	21	4	3458	4	STXBP5L	3	121137241	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		121137241	76885189	13	70466										
MASP1	0	genome.wustl.edu	37	chr3	186953750	186953750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gacgctgtaattgcccgagcGggactcatagctagttttgc	12	10	1	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	3	186953750	186953750	G	A	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	missense	c.1909	p.R637C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	28	0	0	24	14	36.84	-	-	-	A	186953750	G	A	186953750	3	1	848	1	0	0	0	0	1	0	0	0	9393	1116	39	1	1102	1	MASP1	3	186953750	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	65816509	186953750	11068680	14	70467										
ZNF330	0	genome.wustl.edu	37	chr4	142150807	142150807	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgcttgtgcctgccctcttaCcgatgctgagtgtgttgaat	11	10	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	4	142150807	142150807	C	A	SNP	ZNF330	ENST00000262990	human	ensembl	69_37n	1	known	missense	c.374	p.T125N	0.998	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445	95	0	0	58	37	38.95	-	-	-	A	142150807	C	A	142150807	3	1	848	1	0	0	0	0	1	0	0	0	17944	507	18	4	392	4	ZNF330	4	142150807	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		142150807	49003469	15	70468										
IL7R	0	genome.wustl.edu	37	chr5	35874629	35874629	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gttggtcatcttggcctgtgTgttatggaaaaaaaggtgac	13	5	2	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	35874629	35874629	T	C	SNP	IL7R	ENST00000303115	human	ensembl	69_37n	1	known	missense	c.785	p.V262A	0.142	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685	82	0	0	68	50	42.37	-	-	-	C	35874629	T	C	35874629	3	2	848	1	0	0	0	0	1	0	0	0	7759	1696	59	5	807	5	IL7R	5	35874629	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09		35874629	145040631	16	70469										
PJA2	0	genome.wustl.edu	37	chr5	108714080	108714080	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	caagaacatacagtcatgctCtccatcatattcttcacatt	3	12	5	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	108714080	108714080	C	T	SNP	PJA2	ENST00000361189	human	ensembl	69_37n	-1	known	missense	c.1108	p.E370K	0.984	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	96	0	0	61	24	28.24	-	-	-	T	108714080	C	T	108714080	3	4	848	1	0	0	0	0	1	0	0	0	12036	922	32	2	1046	2	PJA2	5	108714080	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	72839451	108714080	72201180	17	70470										
WWC1	0	genome.wustl.edu	37	chr5	167798457	167798457	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	aaccgctcacctttgctgacTgcattagtgatgagttgccg	10	11	1	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	167798457	167798457	T	A	SNP	WWC1	ENST00000265293	human	ensembl	69_37n	1	known	missense	c.148	p.C50S	1.000	superfamily_WW_Rsp5_WWP	pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WWC1	HGNC	ENSG00000113645	53	0	0	59	11	15.71	-	-	-	A	167798457	T	A	167798457	3	1	848	1	0	0	0	0	1	0	0	0	17508	1580	55	5	154	5	WWC1	5	167798457	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09	59084377	167798457	13116803	18	70471										
SLC35B3	0	genome.wustl.edu	37	chr6	8417217	8417217	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	aggaacgcataaccataggtCcgaactggattctgcaaaaa	9	9	1	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	8417217	8417217	C	T	SNP	SLC35B3	ENST00000379660	human	ensembl	69_37n	-1	known	silent	c.885	p.R295	1.000	pfam_UAA	pfam_UAA	-	no_errors	SLC35B3	HGNC	ENSG00000124786	43	0	0	29	4	12.12	-	-	-	T	8417217	C	T	8417217	2	4	848	1	0	0	0	0	0	0	0	1	14666	842	30	2		2	SLC35B3	6	8417217	Silent	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		8417217	162697850	19	70472										
HIST1H2AH	0	genome.wustl.edu	37	chr6	27115041	27115041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	taattatgccgagcgggttgGagccggcgcgccagtgtacc	15	11	0	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	27115041	27115041	G	A	SNP	HIST1H2AH	ENST00000377459	human	ensembl	69_37n	1	known	missense	c.134	p.G45E	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AH	HGNC	ENSG00000184825	43	0	0	29	14	32.56	-	-	-	A	27115041	G	A	27115041	3	1	848	1	0	0	0	0	1	0	0	0	7185	1174	41	2	136	2	HIST1H2AH	6	27115041	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	18697824	27115041	144000026	20	70473										
TXLNB	0	genome.wustl.edu	37	chr6	139576544	139576544	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ttgtgcttttatttttacttGaaaatatgaataaatgtgaa	6	2	0	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	139576544	139576544	G	A	SNP	TXLNB	ENST00000367652	human	ensembl	69_37n	-1	known	missense	c.371	p.S124L	0.526	NULL	pfam_Taxilin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TXLNB	HGNC	ENSG00000164440	12	0	0	3	10	76.92	-	-	-	A	139576544	G	A	139576544	3	1	848	1	0	0	0	0	1	0	0	0	16885	1305	45	2		2	TXLNB	6	139576544	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	112461503	139576544	31538523	21	70474										
PEX1	0	genome.wustl.edu	37	chr7	92119083	92119083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgatatctgccctcagttgaTctctttgttcttgtgtaagt	8	8	4	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	7	92119083	92119083	T	C	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.3581	p.D1194G	0.993	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	100	0	0	73	25	25.51	-	-	-	C	92119083	T	C	92119083	3	2	848	1	0	0	0	0	1	0	0	0	11809	1435	50	5	282	5	PEX1	7	92119083	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09		92119083	67019580	22	70475										
AGPAT6	0	genome.wustl.edu	37	chr8	41467297	41467297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgacattttctacttttgccGgaaaggaatggagaccatta	9	7	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	41467297	41467297	G	A	SNP	AGPAT6	ENST00000396987	human	ensembl	69_37n	1	known	missense	c.359	p.R120Q	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT6	HGNC	ENSG00000158669	45	0	0	7	8	53.33	-	-	-	A	41467297	G	A	41467297	3	1	848	1	0	0	0	0	1	0	0	0	391	1116	39	1	369	1	AGPAT6	8	41467297	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		41467297	104896725	23	70476										
RP1	0	genome.wustl.edu	37	chr8	55540310	55540310	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gtgatggttatggtgtggatCagacttctatgaataaggct	13	4	2	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	55540310	55540310	C	T	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	nonsense	c.3868	p.Q1290*	0.962	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	33	0	0	24	4	14.29	-	-	-	T	55540310	C	T	55540310	4	4	848	1	0	0	0	0	0	1	0	0	13618	827	29	2	3878	2	RP1	8	55540310	Nonsense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	14073013	55540310	90823712	24	70477										
SDC2	0	genome.wustl.edu	37	chr8	97605791	97605791	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ggagtgtatcctattgatgaCgatgactacgcttctgcgtc	11	9	1	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	97605791	97605791	C	A	SNP	SDC2	ENST00000302190	human	ensembl	69_37n	1	known	missense	c.144	p.D48E	0.402	pfam_Syndecan	pfam_Syndecan,smart_Neurexin-like	-	no_errors	SDC2	HGNC	ENSG00000169439	35	0	0	37	16	30.19	-	-	-	A	97605791	C	A	97605791	3	1	848	1	0	0	0	0	1	0	0	0	14040	535	19	3	150	3	SDC2	8	97605791	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	42065481	97605791	48758231	25	70478										
PRSS3	0	genome.wustl.edu	37	chr9	33797959	33797959	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gacaatgacatcatgctgatCaaactctcctcacctgccgt	6	14	4	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	33797959	33797959	C	G	SNP	PRSS3	ENST00000361005	human	ensembl	69_37n	1	known	missense	c.504	p.I168M	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438	76	0	0	43	27	38.57	-	-	-	G	33797959	C	G	33797959	3	3	848	1	0	0	0	0	1	0	0	0	12702	816	29	2	558	2	PRSS3	9	33797959	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		33797959	107415472	26	70479										
RGS3	0	genome.wustl.edu	37	chr9	116224016	116224016	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	agacagcacacctttgcccaAttttctttctggatctcacc	5	14	3	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	116224016	116224016	A	G	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	1	known	missense	c.110	p.N37S	0.000	NULL	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	44	0	0	17	20	54.05	-	-	-	G	116224016	A	G	116224016	3	3	848	1	0	0	0	0	1	0	0	0	13390	101	4	5	116	5	RGS3	9	116224016	Missense_Mutation	SNP	A	TCGA-E9-A1R7-01A-11D-A14K-09	82426057	116224016	24989415	27	70480										
GATA3	0	genome.wustl.edu	37	chr10	8115941	8115942	+	Frame_Shift_Ins	INS	-	-	T													0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	acccgccatccagcctgtccINStttggaccacaccacccctc							TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	10	8115941	8115942	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1290_1291	p.G431fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	24	0	0	26	11	29.73	-	-	-	T	8115942	-	T	8115941	7	5	848	1	0	1	1	0	0	0	0	0	6305	668	24	0	1308	0	GATA3	10	8115941	Frame_Shift_Ins	INS	-	TCGA-E9-A1R7-01A-11D-A14K-09		8115941	127418806	28	70481										
NRP1	0	genome.wustl.edu	37	chr10	33469188	33469188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ggacccccagggcactcatgGctatgatggtgatgaggatg	15	9	1	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	10	33469188	33469188	G	A	SNP	NRP1	ENST00000265371	human	ensembl	69_37n	-1	known	missense	c.2588	p.A863V	1.000	pirsf_Neuropilin,pfam_Neuropilin1_C	pirsf_Neuropilin,pfam_CUB,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_CUB,smart_CUB,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250	77	0	0	54	24	30.77	-	-	-	A	33469188	G	A	33469188	3	1	848	1	0	0	0	0	1	0	0	0	10733	1203	42	4	187	4	NRP1	10	33469188	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	25353247	33469188	102065559	29	70482										
PHRF1	0	genome.wustl.edu	37	chr11	605238	605238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tctttggggctgctgagagcGgatattggagctgcctctct	14	9	2	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	605238	605238	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	69_37n	1	known	silent	c.1272	p.A424	0.962	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	26	0	0	31	27	46.55	-	-	-	A	605238	G	A	605238	2	1	848	1	0	0	0	0	0	0	0	1	11935	1103	39	1		1	PHRF1	11	605238	Silent	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		605238	134401278	30	70483										
MUC5B	0	genome.wustl.edu	37	chr11	1266479	1266479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	catcacagagccttccacggGgacttcccacaccccagcag	8	18	1	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	1266479	1266479	G	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8378	p.G2793V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	14	0	0	34	10	22.73	-	-	-	T	1266479	G	T	1266479	3	4	848	1	0	0	0	0	1	0	0	0	10051	1232	43	4	8500	4	MUC5B	11	1266479	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	661241	1266479	133740037	31	70484										
OR2AG1	0	genome.wustl.edu	37	chr11	6806874	6806874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gagctcatggtatatgtgatGggtgtgaccttcctgattcc	12	8	1	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	6806874	6806874	G	A	SNP	OR2AG1	ENST00000307401	human	ensembl	69_37n	1	known	missense	c.606	p.M202I	0.722	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2AG1	HGNC	ENSG00000170803	96	0	0	95	39	29.1	-	-	-	A	6806874	G	A	6806874	3	1	848	1	0	0	0	0	1	0	0	0	11057	1348	47	4	608	4	OR2AG1	11	6806874	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	5540395	6806874	128199642	32	70485										
EXT2	0	genome.wustl.edu	37	chr11	44219400	44219400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	agtggggcagcgtgagcaatCcactcttcctcccgctgatc	11	14	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	44219400	44219400	C	T	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.1426	p.P476S	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	28	0	0	16	18	52.94	-	-	-	T	44219400	C	T	44219400	3	4	848	1	0	0	0	0	1	0	0	0	5361	855	30	2	1557	2	EXT2	11	44219400	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	37412526	44219400	90787116	33	70486										
ANO4	0	genome.wustl.edu	37	chr12	101490420	101490420	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ttttacatcgcattcttcctCggaaggtaagaacctgaccc	7	12	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	12	101490420	101490420	C	T	SNP	ANO4	ENST00000392977	human	ensembl	69_37n	1	known	silent	c.1845	p.L615	0.269	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	44	0	0	35	8	18.6	-	-	-	T	101490420	C	T	101490420	2	4	848	1	0	0	0	0	0	0	0	1	698	871	31	1		1	ANO4	12	101490420	Silent	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09		101490420	32361475	34	70487										
TEP1	0	genome.wustl.edu	37	chr14	20876196	20876196	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	caaatcagcttgcgtcatgtGagatatctgtagactctgga	10	8	4	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	14	20876196	20876196	G	C	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.403	p.H135D	0.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	45	0	0	29	17	36.96	-	-	-	C	20876196	G	C	20876196	3	2	848	1	0	0	0	0	1	0	0	0	15854	1290	45	2	7696	2	TEP1	14	20876196	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		20876196	86473344	35	70488										
NFATC4	0	genome.wustl.edu	37	chr14	24836347	24836347	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ctcccatctaactccctctcAcacaacccaggcctctccaa	2	21	3	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	14	24836347	24836347	A	C	SNP	NFATC4	ENST00000413692	human	ensembl	69_37n	1	known	silent	c.87	p.S29	0.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	50	0	0	55	17	23.61	-	-	-	C	24836347	A	C	24836347	2	2	848	1	0	0	0	0	0	0	0	1	10437	146	6	5		5	NFATC4	14	24836347	Silent	SNP	A	TCGA-E9-A1R7-01A-11D-A14K-09	3960151	24836347	82513193	36	70489										
MKRN3	0	genome.wustl.edu	37	chr15	23811660	23811660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	gggcagtgggttgcggttttGctattatgcttccaggggag	17	6	0	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	23811660	23811660	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	1	known	missense	c.731	p.C244Y	1.000	smart_Znf_CCCH	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	66	0	0	29	16	34.78	-	-	-	A	23811660	G	A	23811660	3	1	848	1	0	0	0	0	1	0	0	0	9679	1319	46	4	733	4	MKRN3	15	23811660	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		23811660	78719732	37	70490										
CASC4	0	genome.wustl.edu	37	chr15	44615184	44615184	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ttaaactacagaacaacataTcgtatcagatggcagacata	6	8	1	3			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	44615184	44615184	T	A	SNP	CASC4	ENST00000299957	human	ensembl	69_37n	1	known	missense	c.349	p.S117T	1.000	NULL	NULL	-	no_errors	CASC4	HGNC	ENSG00000166734	55	0	0	24	13	35.14	-	-	-	A	44615184	T	A	44615184	3	1	848	1	0	0	0	0	1	0	0	0	2687	1435	50	5	355	5	CASC4	15	44615184	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09	20803524	44615184	57916208	38	70491										
ACAN	0	genome.wustl.edu	37	chr15	89388987	89388987	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ccttcgctgaggttgagaatGagactggagaggccaccagg	15	9	0	4			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	89388987	89388987	G	T	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	nonsense	c.1303	p.E435*	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	13	0	0	13	10	43.48	-	-	-	T	89388987	G	T	89388987	4	4	848	1	0	0	0	0	0	1	0	0	117	1291	45	2	1325	2	ACAN	15	89388987	Nonsense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	44773803	89388987	13142405	39	70492										
PRKCB	0	genome.wustl.edu	37	chr16	24135281	24135281	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tttaacttcctaatggtgctGgggaaaggcagctttggcaa	12	7	0	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	24135281	24135281	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	silent	c.1044	p.L348	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	52	0	0	27	19	41.3	-	-	-	A	24135281	G	A	24135281	2	1	848	1	0	0	0	0	0	0	0	1	12589	1335	47	4		4	PRKCB	16	24135281	Silent	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		24135281	66219472	40	70493										
ITGAL	0	genome.wustl.edu	37	chr16	30515580	30515580	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	aagggacaccgagggaccaaAgggcggtaagaagagatggc	17	7	0	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	30515580	30515580	A	C	SNP	ITGAL	ENST00000356798	human	ensembl	69_37n	1	known	silent	c.2230	p.R744	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAL	HGNC	ENSG00000005844	79	0	0	72	13	15.29	-	-	-	C	30515580	A	C	30515580	2	2	848	1	0	0	0	0	0	0	0	1	7940	63	3	5		5	ITGAL	16	30515580	Silent	SNP	A	TCGA-E9-A1R7-01A-11D-A14K-09	6380299	30515580	59839173	41	70494										
SALL1	0	genome.wustl.edu	37	chr16	51175500	51175500	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ccgccgcacctcgcttcctgGgagaactgggccaccgccac	11	19	0	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	51175500	51175500	G	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	silent	c.633	p.S211	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	22	0	0	10	14	58.33	-	-	-	T	51175500	G	T	51175500	2	4	848	1	0	0	0	0	0	0	0	1	13896	1219	43	4		4	SALL1	16	51175500	Silent	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	20659920	51175500	39179253	42	70495										
ABR	0	genome.wustl.edu	37	chr17	1028559	1028559	+	Frame_Shift_Del	DEL	C	C	-													0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tggagtcggggagacgccatCccccccgccctggctgcggg							TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	1028559	1028559	C	-	DEL	ABR	ENST00000302538	human	ensembl	69_37n	-1	known	frame_shift_del	c.205	p.D69fs	1.000	superfamily_DH-domain	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	17	0	0	15	3	16.67	-	-	-	-	1028559	C	-	1028559	7	5	848	1	0	1	0	1	0	0	0	0	99	855	30	0	2601	0	ABR	17	1028559	Frame_Shift_Del	DEL	C	TCGA-E9-A1R7-01A-11D-A14K-09		1028559	80166651	43	70496										
MYH8	0	genome.wustl.edu	37	chr17	10298758	10298758	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ttcttcatgttcaagagatgCcttaacaaaacagtgatcaa	6	8	4	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	10298758	10298758	C	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4654	p.A1552P	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	53	0	0	20	16	44.44	-	-	-	G	10298758	C	G	10298758	3	3	848	1	0	0	0	0	1	0	0	0	10113	753	26	4	1187	4	MYH8	17	10298758	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	9270199	10298758	70896452	44	70497										
STAT3	0	genome.wustl.edu	37	chr17	40497585	40497585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	ctcaggtctcacctgggccgCagtggctgcagtctgtagaa	13	12	3	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	40497585	40497585	C	T	SNP	STAT3	ENST00000264657	human	ensembl	69_37n	-1	known	missense	c.364	p.A122T	0.992	superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	43	0	0	64	15	18.99	-	-	-	T	40497585	C	T	40497585	3	4	848	1	0	0	0	0	1	0	0	0	15357	710	25	4	2032	4	STAT3	17	40497585	Missense_Mutation	SNP	C	TCGA-E9-A1R7-01A-11D-A14K-09	30198827	40497585	40697625	45	70498										
RPTOR	0	genome.wustl.edu	37	chr17	78704422	78704422	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	acgtggatgggcagcccgtcGatcttcgtctacgactgctc	12	13	2	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	78704422	78704422	G	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	silent	c.570	p.S190	0.962	prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	37	0	0	38	12	24	-	-	-	T	78704422	G	T	78704422	2	4	848	1	0	0	0	0	0	0	0	1	13751	1045	37	3		3	RPTOR	17	78704422	Silent	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09	38206837	78704422	2490788	46	70499										
PHLPP1	0	genome.wustl.edu	37	chr18	60563042	60563042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	catttttgttggatggaaacTttctccaatcccttcctgct	6	11	1	0			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	18	60563042	60563042	T	G	SNP	PHLPP1	ENST00000262719	human	ensembl	69_37n	1	known	missense	c.2242	p.F748V	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913	74	0	0	48	25	34.25	-	-	-	G	60563042	T	G	60563042	3	3	848	1	0	0	0	0	1	0	0	0	11928	1609	56	5	2264	5	PHLPP1	18	60563042	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09		60563042	17514206	47	70500										
GSK3A	0	genome.wustl.edu	37	chr19	42738739	42738739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	tgaggacagcagtgtcagggTccaccagcaggttctggggc	16	10	2	1			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	19	42738739	42738739	T	C	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.758	p.D253G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	31	0	0	10	16	61.54	-	-	-	C	42738739	T	C	42738739	3	2	848	1	0	0	0	0	1	0	0	0	6874	1667	58	5	721	5	GSK3A	19	42738739	Missense_Mutation	SNP	T	TCGA-E9-A1R7-01A-11D-A14K-09		42738739	16390244	48	70501										
SIGLEC1	0	genome.wustl.edu	37	chr20	3682202	3682202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.163265306122449	8	0.164708664725809	1.93607305936073	4.90068493150685	1.42048838594401	0.649916646820672	1	0	cagcaccagtgtggccagggGctcactgaccacagagcagt	13	13	1	2			TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	20	3682202	3682202	G	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	missense	c.1315	p.P439T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	30	0	0	15	6	28.57	-	-	-	T	3682202	G	T	3682202	3	4	848	1	0	0	0	0	1	0	0	0	14394	1203	42	4	3878	4	SIGLEC1	20	3682202	Missense_Mutation	SNP	G	TCGA-E9-A1R7-01A-11D-A14K-09		3682202	59343318	49	70502										
LRRC7	0	genome.wustl.edu	37	chr1	70397248	70397248	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	taggcaataatgaattcggtGagctggtaagcaaatgcatt	11	5	0	2			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	1	70397248	70397248	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	1	known	missense	c.592	p.E198K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	63	0	0	48	10	17.24	-	-	-	A	70397248	G	A	70397248	3	1	849	1	0	0	0	0	1	0	0	0	9086	1291	45	2	614	2	LRRC7	1	70397248	Missense_Mutation	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09		70397248	178853373	1	70503										
CCDC74A	0	genome.wustl.edu	37	chr2	132288159	132288159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	tcctgctttccagatggcccCtcaggaaaccacctttccag	7	16	1	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	2	132288159	132288159	C	T	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	1	known	silent	c.303	p.P101	0.638	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	34	0	0	39	16	28.57	-	-	-	T	132288159	C	T	132288159	2	4	849	1	0	0	0	0	0	0	0	1	2874	668	24	4		4	CCDC74A	2	132288159	Silent	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		132288159	110911214	2	70504										
GLT8D1	0	genome.wustl.edu	37	chr3	52729291	52729291	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	ggaggtgttgtgatgctaccAgccagggttctgctatacag	14	8	1	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	52729291	52729291	A	C	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	silent	c.840	p.A280	0.995	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	96	0	0	87	12	12.12	-	-	-	C	52729291	A	C	52729291	2	2	849	1	0	0	0	0	0	0	0	1	6521	175	7	5		5	GLT8D1	3	52729291	Silent	SNP	A	TCGA-E9-A1RA-01A-11D-A14G-09		52729291	145293139	3	70505										
CCDC14	0	genome.wustl.edu	37	chr3	123663791	123663791	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cttactgttggaagtacagaTatacatgcctccatttctgt	7	9	1	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	123663791	123663791	T	C	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.1392	p.I464M	0.797	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	80	0	0	59	14	19.18	-	-	-	C	123663791	T	C	123663791	3	2	849	1	0	0	0	0	1	0	0	0	2798	1396	49	5	1489	5	CCDC14	3	123663791	Missense_Mutation	SNP	T	TCGA-E9-A1RA-01A-11D-A14G-09	70934500	123663791	74358639	4	70506										
LEKR1	0	genome.wustl.edu	37	chr3	156710975	156710975	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	agcaagaagaagacataaagAgaagaattaaccttgcagaa	9	5	0	6			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	156710975	156710975	A	G	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	missense	c.1018	p.R340G	0.673	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	41	0	0	45	10	18.18	-	-	-	G	156710975	A	G	156710975	3	3	849	1	0	0	0	0	1	0	0	0	8771	296	11	5	1048	5	LEKR1	3	156710975	Missense_Mutation	SNP	A	TCGA-E9-A1RA-01A-11D-A14G-09	33047184	156710975	41311455	5	70507										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0	43	13	23.21	-	-	-	A	178936082	G	A	178936082	3	1	849	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09	22225107	178936082	19086348	6	70508										
GRM6	0	genome.wustl.edu	37	chr5	178408703	178408703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cccttgggtggggctgccacCgtggaggtggccttgaggct	18	11	0	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	5	178408703	178408703	C	T	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	silent	c.2589	p.T863	0.022	prints_GPCR_3_mtglu_rcpt_6	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	51	0	0	68	26	27.66	-	-	-	T	178408703	C	T	178408703	2	4	849	1	0	0	0	0	0	0	0	1	6852	639	23	1		1	GRM6	5	178408703	Silent	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		178408703	2506557	7	70509										
WBSCR17	0	genome.wustl.edu	37	chr7	71175847	71175847	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	gtggacaactccaagagtcgGctgccccagctcctggactg	12	14	0	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	71175847	71175847	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	1	known	silent	c.1602	p.R534	0.927	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	14	0	0	20	10	33.33	-	-	-	T	71175847	G	T	71175847	2	4	849	1	0	0	0	0	0	0	0	1	17361	1190	42	4		4	WBSCR17	7	71175847	Silent	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09		71175847	87962816	8	70510										
PTK2	0	genome.wustl.edu	37	chr8	141749152	141749152	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cactagctgaggtaaaacgtCgaaaattgattgactctgga	10	7	1	3			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	8	141749152	141749152	C	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.1790	p.R597L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	88	0	0	39	16	29.09	-	-	-	A	141749152	C	A	141749152	3	1	849	1	0	0	0	0	1	0	0	0	12843	884	31	3	1416	3	PTK2	8	141749152	Missense_Mutation	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		141749152	4614870	9	70511										
ABTB2	0	genome.wustl.edu	37	chr11	34173993	34173993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	tgccagggtgttctgcaggtCctgcagtggatccaggccct	14	12	1	0			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	11	34173993	34173993	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	missense	c.3019	p.D1007N	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	11	0	0	19	6	24	-	-	-	T	34173993	C	T	34173993	3	4	849	1	0	0	0	0	1	0	0	0	103	855	30	2	62	2	ABTB2	11	34173993	Missense_Mutation	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		34173993	100832523	10	70512										
LRRC10	0	genome.wustl.edu	37	chr12	70004328	70004328	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	tagaggatgcagagctgtttCaaggtgcacaccacctgggg	14	9	1	2			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	70004328	70004328	C	T	SNP	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	silent	c.291	p.L97	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	39	0	0	41	29	41.43	-	-	-	T	70004328	C	T	70004328	2	4	849	1	0	0	0	0	0	0	0	1	9033	825	29	2		2	LRRC10	12	70004328	Silent	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		70004328	63847567	11	70513										
NEK3	0	genome.wustl.edu	37	chr13	52725510	52725510	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cccaatttcacttttccattCtgagtgaggaagatattctg	7	9	3	3			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	13	52725510	52725510	C	A	SNP	NEK3	ENST00000452082	human	ensembl	69_37n	-1	known	missense	c.474	p.Q158H	0.981	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098	84	0	0	45	11	19.64	-	-	-	A	52725510	C	A	52725510	3	1	849	1	0	0	0	0	1	0	0	0	10397	912	32	2	1153	2	NEK3	13	52725510	Missense_Mutation	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		52725510	62444368	12	70514										
TMC7	0	genome.wustl.edu	37	chr16	19070770	19070770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	ttacttcattgccttagctgGagcacacaaacgggtggtca	10	10	2	0			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	19070770	19070770	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	1	known	missense	c.2060	p.G687E	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	57	0	0	65	27	29.35	-	-	-	A	19070770	G	A	19070770	3	1	849	1	0	0	0	0	1	0	0	0	16085	1174	41	2	2118	2	TMC7	16	19070770	Missense_Mutation	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09		19070770	71283983	13	70515										
CLEC18C	0	genome.wustl.edu	37	chr16	70211379	70211379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cgccacctgcacccactacaCgcaggtgagtgtgctgcagg	12	15	0	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	70211379	70211379	C	T	SNP	CLEC18C	ENST00000314151	human	ensembl	69_37n	1	known	missense	c.452	p.T151M	0.997	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_C-type_lectin,pfam_CAP_domain,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18C	HGNC	ENSG00000157335	22	0	0	31	10	24.39	-	-	-	T	70211379	C	T	70211379	3	4	849	1	0	0	0	0	1	0	0	0	3534	536	19	1	462	1	CLEC18C	16	70211379	Missense_Mutation	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09	51140609	70211379	20143374	14	70516										
NEURL4	0	genome.wustl.edu	37	chr17	7227242	7227242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	gccgtgcagctgatggaagcGcaggtcagagcccccggccc	15	15	1	2			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	7227242	7227242	G	A	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.2152	p.R718C	1.000	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	23	0	0	25	9	25.71	-	-	-	A	7227242	G	A	7227242	3	1	849	1	0	0	0	0	1	0	0	0	10419	1087	38	1	2608	1	NEURL4	17	7227242	Missense_Mutation	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09		7227242	73967968	15	70517										
OR7C2	0	genome.wustl.edu	37	chr19	15053236	15053236	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	agggcaacgtctctcaaagaGgggaccattgctaagctctc	11	11	3	1			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	19	15053236	15053236	G	A	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	silent	c.936	p.E312	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	32	0	0	30	9	23.08	-	-	-	A	15053236	G	A	15053236	2	1	849	1	0	0	0	0	0	0	0	1	11291	991	35	4		4	OR7C2	19	15053236	Silent	SNP	G	TCGA-E9-A1RA-01A-11D-A14G-09		15053236	44075747	16	70518										
KIF16B	0	genome.wustl.edu	37	chr20	16488613	16488613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	cagcccttacctgagtgaacTtgatggtgaagatggcatga	12	8	0	6			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	20	16488613	16488613	T	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.689	p.K230R	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	55	0	0	60	21	25.93	-	-	-	C	16488613	T	C	16488613	3	2	849	1	0	0	0	0	1	0	0	0	8330	1609	56	5	3344	5	KIF16B	20	16488613	Missense_Mutation	SNP	T	TCGA-E9-A1RA-01A-11D-A14G-09		16488613	46536907	17	70519										
GRAMD4	0	genome.wustl.edu	37	chr22	47070636	47070636	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	atcaggaacggggtgctctaCgtcacggagaagtgagtgca	15	8	3	2			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	22	47070636	47070636	C	T	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	1	known	silent	c.1467	p.Y489	0.994	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	25	0	0	30	8	21.05	-	-	-	T	47070636	C	T	47070636	2	4	849	1	0	0	0	0	0	0	0	1	6803	547	19	1		1	GRAMD4	22	47070636	Silent	SNP	C	TCGA-E9-A1RA-01A-11D-A14G-09		47070636	4233930	18	70520										
DMD	0	genome.wustl.edu	37	chrX	32613970	32613970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.576351931606999	1.67355371900826	NA	1.67355371900826	0.142857142857143	0.62934362934363	0	gaattgaccctgacttgttcTtgttctagatcttcttgaag	8	8	4	4			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	X	32613970	32613970	T	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.1506	p.Q502H	0.988	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	127	0	0	88	41	31.78	-	-	-	G	32613970	T	G	32613970	3	3	849	1	0	0	0	0	1	0	0	0	4616	1606	56	5	10062	5	DMD	23	32613970	Missense_Mutation	SNP	T	TCGA-E9-A1RA-01A-11D-A14G-09		32613970	122656590	19	70521										
LCK	0	genome.wustl.edu	37	chr1	32745462	32745462	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attgcagaaggcatggcattCattgaagagcggaattatat	11	5	1	3			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	32745462	32745462	C	A	SNP	LCK	ENST00000333070	human	ensembl	69_37n	1	known	missense	c.1152	p.F384L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866	55	0	0	35	73	67.59	-	-	-	A	32745462	C	A	32745462	3	1	850	1	0	0	0	0	1	0	0	0	8730	825	29	2	1100	2	LCK	1	32745462	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		32745462	216505159	1	70522										
CFH	0	genome.wustl.edu	37	chr1	196711113	196711113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttacacttgtgcaacatattAcaaaatggatggagccagta	8	7	0	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	196711113	196711113	A	G	SNP	CFH	ENST00000367429	human	ensembl	69_37n	1	known	missense	c.3065	p.Y1022C	0.056	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	58	0	0	76	26	25.49	-	-	-	G	196711113	A	G	196711113	3	3	850	1	0	0	0	0	1	0	0	0	3312	391	14	5	3157	5	CFH	1	196711113	Missense_Mutation	SNP	A	TCGA-E9-A1RB-01A-11D-A17G-09	163965651	196711113	52539508	2	70523										
ZNF281	0	genome.wustl.edu	37	chr1	200378052	200378052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cactacagtgatcacagataTgaggtttctgacttggggag	12	7	2	4			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	200378052	200378052	T	C	SNP	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	missense	c.782	p.H261R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	59	0	0	68	29	29.9	-	-	-	C	200378052	T	C	200378052	3	2	850	1	0	0	0	0	1	0	0	0	17914	1464	51	5	1909	5	ZNF281	1	200378052	Missense_Mutation	SNP	T	TCGA-E9-A1RB-01A-11D-A17G-09	3666939	200378052	48872569	3	70524										
OR2T2	0	genome.wustl.edu	37	chr1	248616764	248616764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tctgtctcctacacgcacatCctcctgactgtccacaggat	6	16	2	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	248616764	248616764	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.666	p.I222	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	51	0	0	39	19	32.76	-	-	-	T	248616764	C	T	248616764	2	4	850	1	0	0	0	0	0	0	0	1	11093	845	30	2		2	OR2T2	1	248616764	Silent	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09	48238712	248616764	633857	4	70525										
LOXL3	0	genome.wustl.edu	37	chr2	74761688	74761688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgtgccacacccaggagtggCgcccagccttgggcctgaag	14	15	0	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	74761688	74761688	C	T	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.1793	p.R598H	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	49	0	0	48	15	23.81	-	-	-	T	74761688	C	T	74761688	3	4	850	1	0	0	0	0	1	0	0	0	8967	768	27	1	488	1	LOXL3	2	74761688	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		74761688	168437685	5	70526										
BAZ2B	0	genome.wustl.edu	37	chr2	160304785	160304785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	catttcgattactttttcccGaagtccttgaatggaatgaa	7	8	0	2			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	160304785	160304785	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.470	p.S157L	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	94	0	0	53	17	24.29	-	-	-	A	160304785	G	A	160304785	3	1	850	1	0	0	0	0	1	0	0	0	1336	1059	37	1	6168	1	BAZ2B	2	160304785	Missense_Mutation	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09	85543097	160304785	82894588	6	70527										
WIPF1	0	genome.wustl.edu	37	chr2	175436606	175436606	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcctgctgggaggtggcggCggaggtggggcctgtgagga	24	7	0	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	175436606	175436606	C	T	SNP	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	silent	c.927	p.P309	0.089	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	44	0	0	24	8	25	-	-	-	T	175436606	C	T	175436606	2	4	850	1	0	0	0	0	0	0	0	1	17464	755	27	1		1	WIPF1	2	175436606	Silent	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09	15131821	175436606	67762767	7	70528										
GRIP2	0	genome.wustl.edu	37	chr3	14547146	14547146	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttggcggctcccaatcatcCtcctcctcctcctctggaaa	7	17	2	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	3	14547146	14547146	C	A	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	45	0	0	20	10	33.33	-	-	-	A	14547146	C	A	14547146	1	1	850	0	1	0	0	0	0	0	0	0	6839	680	24	4		4	GRIP2	3	14547146	RNA	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		14547146	183475284	8	70529										
SEMA6A	0	genome.wustl.edu	37	chr5	115783352	115783352	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccttctccttgcgctgcaCcacagccacgtctttgcgcc	7	19	2	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	5	115783352	115783352	C	G	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.2101	p.V701L	0.007	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	35	0	0	21	14	40	-	-	-	G	115783352	C	G	115783352	3	3	850	1	0	0	0	0	1	0	0	0	14127	507	18	4	1046	4	SEMA6A	5	115783352	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		115783352	65131908	9	70530										
HIP1	0	genome.wustl.edu	37	chr7	75182834	75182834	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcttccctcttcctccaggGaggccaggtaggcgagggtt	15	12	1	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	7	75182834	75182834	G	T	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	missense	c.2213	p.S738Y	0.875	NULL	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	31	0	0	35	17	32.69	-	-	-	T	75182834	G	T	75182834	3	4	850	1	0	0	0	0	1	0	0	0	7165	1174	41	2	940	2	HIP1	7	75182834	Missense_Mutation	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		75182834	83955829	10	70531										
FAM115A	0	genome.wustl.edu	37	chr7	143556202	143556202	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgagcttctcgttgatgagCtcctgcactgactccagatg	10	11	1	5			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	7	143556202	143556202	C	T	SNP	FAM115A	ENST00000479870	human	ensembl	69_37n	-1	known	silent	c.2220	p.E740	1.000	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420	9	0	0	5	5	50	-	-	-	T	143556202	C	T	143556202	2	4	850	1	0	0	0	0	0	0	0	1	5445	796	28	4		4	FAM115A	7	143556202	Silent	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09	68373368	143556202	15582461	11	70532										
WDR34	0	genome.wustl.edu	37	chr9	131397466	131397466	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccgatgccctgccagagtaGcaccttcccgtcggtggcca	11	17	0	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	9	131397466	131397466	G	A	SNP	WDR34	ENST00000372715	human	ensembl	69_37n	-1	known	silent	c.886	p.L296	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333	14	0	0	26	7	21.21	-	-	-	A	131397466	G	A	131397466	2	1	850	1	0	0	0	0	0	0	0	1	17385	962	34	4		4	WDR34	9	131397466	Silent	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		131397466	9815965	12	70533										
ANK3	0	genome.wustl.edu	37	chr10	61959967	61959967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccggagcgagctgccatgtGcagtgctgtttctcctctct	12	13	2	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	10	61959967	61959967	G	A	SNP	ANK3	ENST00000280772	human	ensembl	69_37n	-1	known	missense	c.1411	p.H471Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	54	0	0	50	30	37.5	-	-	-	A	61959967	G	A	61959967	3	1	850	1	0	0	0	0	1	0	0	0	622	1319	46	4	12179	4	ANK3	10	61959967	Missense_Mutation	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		61959967	73574780	13	70534										
NAT10	0	genome.wustl.edu	37	chr11	34160963	34160963	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggttcctagccttgctctcCtaccagttcagtaccttctc	6	16	3	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	11	34160963	34160963	C	T	SNP	NAT10	ENST00000257829	human	ensembl	69_37n	1	known	silent	c.2340	p.S780	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	64	0	0	45	33	41.77	-	-	-	T	34160963	C	T	34160963	2	4	850	1	0	0	0	0	0	0	0	1	10246	668	24	4		4	NAT10	11	34160963	Silent	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		34160963	100845553	14	70535										
ADRBK1	0	genome.wustl.edu	37	chr11	67050279	67050279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatgagatcgaccgcatgaCgctgacgatggtgggtgcag	16	9	0	3			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	11	67050279	67050279	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	69_37n	1	known	missense	c.1217	p.T406M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020	28	0	0	29	5	14.71	-	-	-	T	67050279	C	T	67050279	3	4	850	1	0	0	0	0	1	0	0	0	343	536	19	1	1271	1	ADRBK1	11	67050279	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09	32889316	67050279	67956237	15	70536										
RNF113B	0	genome.wustl.edu	37	chr13	98828595	98828595	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctttggcggggttaaagatgCcgccggttggctggtcacag	16	9	1	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	13	98828595	98828595	C	A	SNP	RNF113B	ENST00000267291	human	ensembl	69_37n	-1	known	missense	c.896	p.G299V	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797	73	0	0	24	48	66.67	-	-	-	A	98828595	C	A	98828595	3	1	850	1	0	0	0	0	1	0	0	0	13514	739	26	4	80	4	RNF113B	13	98828595	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		98828595	16341283	16	70537										
OR4E2	0	genome.wustl.edu	37	chr14	22133650	22133650	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atctttctgctgatcattgtGgcgtatgatcgttacgtggc	11	8	3	2			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	14	22133650	22133650	G	T	SNP	OR4E2	ENST00000408935	human	ensembl	69_37n	1	known	silent	c.354	p.V118	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977	61	0	0	34	61	64.21	-	-	-	T	22133650	G	T	22133650	2	4	850	1	0	0	0	0	0	0	0	1	11133	1335	47	4		4	OR4E2	14	22133650	Silent	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		22133650	85215890	17	70538										
VWA3A	0	genome.wustl.edu	37	chr16	22142969	22142969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcgccctgcggaaggctgtGgaagtagacttcaaggacaa	14	9	1	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	16	22142969	22142969	G	A	SNP	VWA3A	ENST00000299840	human	ensembl	69_37n	1	known	missense	c.619	p.G207R	0.814	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3A	HGNC	ENSG00000175267	42	0	0	71	8	10.13	-	-	-	A	22142969	G	A	22142969	3	1	850	1	0	0	0	0	1	0	0	0	17337	1335	47	4	1865	4	VWA3A	16	22142969	Missense_Mutation	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		22142969	68211784	18	70539										
PRSS8	0	genome.wustl.edu	37	chr16	31144597	31144597	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cactgctcagacacgagagaGccaccacacacatggacgcc	9	16	1	2			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	16	31144597	31144597	G	T	SNP	PRSS8	ENST00000317508	human	ensembl	69_37n	-1	known	silent	c.216	p.G72	0.312	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	PRSS8	HGNC	ENSG00000052344	38	0	0	70	11	13.58	-	-	-	T	31144597	G	T	31144597	2	4	850	1	0	0	0	0	0	0	0	1	12715	958	34	4		4	PRSS8	16	31144597	Silent	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09	9001628	31144597	59210156	19	70540										
TP53	0	genome.wustl.edu	37	chr17	7577082	7577082	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcttgcggagattctcttCctctgtgcgccggtctctcc	9	14	4	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	7577082	7577082	C	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.856	p.E286Q	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	80	0	0	28	39	58.21	-	-	-	G	7577082	C	G	7577082	3	3	850	1	0	0	0	0	1	0	0	0	16477	864	30	2	430	2	TP53	17	7577082	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		7577082	73618128	20	70541										
LPO	0	genome.wustl.edu	37	chr17	56344804	56344804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcaagatgctggccaagaaGttactgggtctctacgggac	13	9	1	2			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	56344804	56344804	G	A	SNP	LPO	ENST00000262290	human	ensembl	69_37n	1	known	silent	c.1788	p.K596	0.902	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	40	0	0	26	13	33.33	-	-	-	A	56344804	G	A	56344804	2	1	850	1	0	0	0	0	0	0	0	1	8988	1020	36	4		4	LPO	17	56344804	Silent	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09	48767722	56344804	24850406	21	70542										
TMEM200C	0	genome.wustl.edu	37	chr18	5891633	5891633	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcccacggacgtggaggaggAggacggggaggcggctcgtg	22	9	0	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	18	5891633	5891633	A	G	SNP	TMEM200C	ENST00000383490	human	ensembl	69_37n	-1	known	missense	c.430	p.S144P	0.701	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432	49	0	0	30	9	23.08	-	-	-	G	5891633	A	G	5891633	3	3	850	1	0	0	0	0	1	0	0	0	16220	304	11	5	1439	5	TMEM200C	18	5891633	Missense_Mutation	SNP	A	TCGA-E9-A1RB-01A-11D-A17G-09		5891633	72185615	22	70543										
CNDP2	0	genome.wustl.edu	37	chr18	72173106	72173106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctgatggctcggagatccCgctccctcctattctgctcg	9	17	1	2			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	18	72173106	72173106	C	T	SNP	CNDP2	ENST00000324262	human	ensembl	69_37n	1	known	missense	c.227	p.P76L	0.994	pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313	33	0	0	21	20	48.78	-	-	-	T	72173106	C	T	72173106	3	4	850	1	0	0	0	0	1	0	0	0	3624	652	23	1	237	1	CNDP2	18	72173106	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09	66281473	72173106	5904142	23	70544										
C3	0	genome.wustl.edu	37	chr19	6694484	6694484	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccctgccgcttctctaggcCgaacttctcccactgctccg	7	20	2	0			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	19	6694484	6694484	C	G	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.3112	p.G1038R	0.899	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	49	0	0	40	17	29.82	-	-	-	G	6694484	C	G	6694484	3	3	850	1	0	0	0	0	1	0	0	0	2224	652	23	3	1951	3	C3	19	6694484	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		6694484	52434499	24	70545										
KIR3DL1	0	genome.wustl.edu	37	chr19	55341436	55341436	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagaacagccaacagcgagGtaggtgctcctcggcccagc	12	14	0	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	19	55341436	55341436	G	A	SNP	KIR3DL1	ENST00000391728	human	ensembl	69_37n	1	known	splice_site	c.1158+1	e8+1	0.102	-	-	-	no_errors	KIR3DL1	HGNC	ENSG00000167633	99	0	0	32	77	70.64	-	-	-	A	55341436	G	A	55341436	5	1	850	1	0	0	0	0	0	0	1	0	8373	1275	44	4	1189	4	KIR3DL1	19	55341436	Splice_Site	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09	48646952	55341436	3787547	25	70546										
PTPRT	0	genome.wustl.edu	37	chr20	41420080	41420080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttctggccagaggctctccCagagctgttcaccatcatga	9	14	4	3			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	20	41420080	41420080	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	missense	c.241	p.G81R	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	38	0	0	42	19	31.15	-	-	-	T	41420080	C	T	41420080	3	4	850	1	0	0	0	0	1	0	0	0	12895	594	21	4	4261	4	PTPRT	20	41420080	Missense_Mutation	SNP	C	TCGA-E9-A1RB-01A-11D-A17G-09		41420080	21605440	26	70547										
KRTAP19-7	0	genome.wustl.edu	37	chr21	31933504	31933505	+	Frame_Shift_Del	DEL	CA	CA	-													0	0	1	0	0	0	1	1	0	ccatagccacagccatagccCagtctgcggaagctgccaca							TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	21	31933504	31933505	CA	-	DEL	KRTAP19-7	ENST00000334849	human	ensembl	69_37n	-1	known	frame_shift_del	c.105_104	p.L35fs	0.984:0.952	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-7	HGNC	ENSG00000244362	126	0	0	81	14	14.58	-	-	-	-	31933505	CA	-	31933504	7	5	850	1	0	1	0	1	0	0	0	0	8587	581	21	0	89	0	KRTAP19-7	21	31933504	Frame_Shift_Del	DEL	CA	TCGA-E9-A1RB-01A-11D-A17G-09		31933504	16196391	27	70548										
SMARCA1	0	genome.wustl.edu	37	chrX	128649967	128649967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttgctctgtgcgcctatggcGgtagctgaaattaaaaaagg	12	7	1	1			TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	X	128649967	128649967	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.433	p.R145C	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	101	0	0	74	14	15.91	-	-	-	A	128649967	G	A	128649967	3	1	850	1	0	0	0	0	1	0	0	0	14857	1116	39	1	2815	1	SMARCA1	23	128649967	Missense_Mutation	SNP	G	TCGA-E9-A1RB-01A-11D-A17G-09		128649967	26620593	28	70549										
MACF1	0	genome.wustl.edu	37	chr1	39797089	39797089	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cattaatccccagatgtaccAgcagctccgggagctacagg	10	13	0	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	39797089	39797089	A	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	1	putative	missense	c.4940	p.Q1647R	0.982	pfam_Plectin_repeat,superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	40	0	0	10	4	28.57	-	-	-	G	39797089	A	G	39797089	3	3	851	1	0	0	0	0	1	0	0	0	9211	188	7	5	4920	5	MACF1	1	39797089	Missense_Mutation	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09		39797089	209453532	1	70550										
FOXJ3	0	genome.wustl.edu	37	chr1	42657000	42657000	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tacaggatacctgttgtgggGgtgggggtgcctgatgtgtt	18	5	0	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	42657000	42657000	G	C	SNP	FOXJ3	ENST00000361346	human	ensembl	69_37n	-1	known	missense	c.1325	p.P442R	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815	276	0	0	96	78	44.57	-	-	-	C	42657000	G	C	42657000	3	2	851	1	0	0	0	0	1	0	0	0	6061	1232	43	4	563	4	FOXJ3	1	42657000	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	2859911	42657000	206593621	2	70551										
FLG	0	genome.wustl.edu	37	chr1	152280087	152280087	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ccggtccgtccatgggcggaCtcagactgttcatgagtgct	13	12	2	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	152280087	152280087	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7275	p.E2425D	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	238	0	0	288	43	12.99	-	-	-	G	152280087	C	G	152280087	3	3	851	1	0	0	0	0	1	0	0	0	5968	564	20	4	4914	4	FLG	1	152280087	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	109623087	152280087	96970534	3	70552										
FMO3	0	genome.wustl.edu	37	chr1	171086558	171086558	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gcaattcctattctgttaatCgctgttttccttgtgttgac	7	9	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	171086558	171086558	C	T	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	silent	c.1575	p.I525	0.960	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	179	0	0	203	24	10.57	-	-	-	T	171086558	C	T	171086558	2	4	851	1	0	0	0	0	0	0	0	1	6002	874	31	1		1	FMO3	1	171086558	Silent	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	18806471	171086558	78164063	4	70553										
TLR5	0	genome.wustl.edu	37	chr1	223285350	223285350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cagaaggttatatgacaaatTgagaacttggaggttgtcaa	11	4	1	3			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	223285350	223285350	T	G	SNP	TLR5	ENST00000342210	human	ensembl	69_37n	-1	known	missense	c.1024	p.N342H	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554	45	0	0	87	13	13	-	-	-	G	223285350	T	G	223285350	3	3	851	1	0	0	0	0	1	0	0	0	16049	1812	63	5	1556	5	TLR5	1	223285350	Missense_Mutation	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	52198792	223285350	25965271	5	70554										
OR2T2	0	genome.wustl.edu	37	chr1	248616764	248616764	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tctgtctcctacacgcacatCctcctgactgtccacaggat	6	16	2	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	1	248616764	248616764	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.666	p.I222	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	70	0	0	32	7	17.95	-	-	-	T	248616764	C	T	248616764	2	4	851	1	0	0	0	0	0	0	0	1	11093	845	30	2		2	OR2T2	1	248616764	Silent	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	25331414	248616764	633857	6	70555										
ZAP70	0	genome.wustl.edu	37	chr2	98354503	98354503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ccttcatcgagcagggcaagCggatggagtgcccaccagag	14	12	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	2	98354503	98354503	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	69_37n	1	known	missense	c.1669	p.R557W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	ZAP70	HGNC	ENSG00000115085	73	0	0	27	9	25	-	-	-	T	98354503	C	T	98354503	3	4	851	1	0	0	0	0	1	0	0	0	17611	759	27	1	1711	1	ZAP70	2	98354503	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		98354503	144844870	7	70556										
LCT	0	genome.wustl.edu	37	chr2	136566446	136566446	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tagtctccgtttctaaaaatGgggtgagcaaaccagcccag	10	10	2	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	2	136566446	136566446	G	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	silent	c.3471	p.P1157	0.993	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	54	0	0	32	6	15.79	-	-	-	T	136566446	G	T	136566446	2	4	851	1	0	0	0	0	0	0	0	1	8747	1335	47	4		4	LCT	2	136566446	Silent	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	38211943	136566446	106632927	8	70557										
TTN	0	genome.wustl.edu	37	chr2	179458370	179458370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cagattttcagcatgtatccGgaaaatataatcttttcctt	5	8	2	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	2	179458370	179458370	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.50953	p.R16985W	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	73	0	0	32	18	36	-	-	-	A	179458370	G	A	179458370	3	1	851	1	0	0	0	0	1	0	0	0	16832	1115	39	1	49582	1	TTN	2	179458370	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	42891924	179458370	63741003	9	70558										
TTN	0	genome.wustl.edu	37	chr2	179536934	179536934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ctacttctaattctagtcttTcttttactactacttcttgg	3	10	5	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	2	179536934	179536934	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.31088	p.E10363G	0.004	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	50	0	0	24	14	36.84	-	-	-	C	179536934	T	C	179536934	3	2	851	1	0	0	0	0	1	0	0	0	16832	1783	62	5	69549	5	TTN	2	179536934	Missense_Mutation	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	78564	179536934	63662439	10	70559										
SLC40A1	0	genome.wustl.edu	37	chr2	190437615	190437615	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tcagaagctcatgtttatgtAagaaaaccatcatcaggatg	8	7	4	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	2	190437615	190437615	A	C	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	nonsense	c.344	p.L115*	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	32	0	0	11	8	42.11	-	-	-	C	190437615	A	C	190437615	4	2	851	1	0	0	0	0	0	1	0	0	14717	372	13	5	1391	5	SLC40A1	2	190437615	Nonsense_Mutation	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09	10900681	190437615	52761758	11	70560										
PRKCD	0	genome.wustl.edu	37	chr3	53223073	53223073	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tgctgctctccccaccgccaGatcctacagggcctgaagta	9	16	1	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	3	53223073	53223073	G	C	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	1	known	splice_site	c.1555-1	e15-1	1.000	-	-	-	no_errors	PRKCD	HGNC	ENSG00000163932	87	0	0	5	73	93.59	-	-	-	C	53223073	G	C	53223073	5	2	851	1	0	0	0	0	0	0	1	0	12590	956	33	2	1612	2	PRKCD	3	53223073	Splice_Site	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		53223073	144799357	12	70561										
PHC3	0	genome.wustl.edu	37	chr3	169889120	169889120	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	acttttggaaaacaattcttTaaaattttaaatccaggaaa	4	5	1	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	3	169889120	169889120	T	C	SNP	PHC3	ENST00000497658	human	ensembl	69_37n	-1	known	silent	c.455	p.*152	0.119	NULL	NULL	-	no_errors	PHC3	HGNC	ENSG00000173889	16	0	0	14	5	26.32	-	-	-	C	169889120	T	C	169889120	2	2	851	1	0	0	0	0	0	0	0	1	11892	1769	61	5		5	PHC3	3	169889120	Silent	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	116666047	169889120	28133310	13	70562										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	57	0	0	6	47	88.68	-	-	-	G	178952085	A	G	178952085	3	3	851	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09	9062965	178952085	19070345	14	70563										
TLR3	0	genome.wustl.edu	37	chr4	187004668	187004668	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	catctgtctttaataatcagGtgtctctaaagtcattgaac	6	8	5	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	4	187004668	187004668	G	C	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.1828	p.V610L	0.002	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	42	0	0	35	10	22.22	-	-	-	C	187004668	G	C	187004668	3	2	851	1	0	0	0	0	1	0	0	0	16047	1261	44	4	1838	4	TLR3	4	187004668	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		187004668	4149608	15	70564										
TRPC7	0	genome.wustl.edu	37	chr5	135651308	135651308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cttgacttcatatttaatggCgagtttgatccggctcagac	9	9	2	3			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	5	135651308	135651308	C	T	SNP	TRPC7	ENST00000513104	human	ensembl	69_37n	-1	known	missense	c.940	p.A314T	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	89	0	0	87	23	20.91	-	-	-	T	135651308	C	T	135651308	3	4	851	1	0	0	0	0	1	0	0	0	16680	768	27	1	1688	1	TRPC7	5	135651308	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		135651308	45263952	16	70565										
MDC1	0	genome.wustl.edu	37	chr6	30671982	30671982	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tgtgggggtaaaaggctcaaGatcagaggctgctggttcaa	15	6	3	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	6	30671982	30671982	G	A	SNP	MDC1	ENST00000376406	human	ensembl	69_37n	-1	known	missense	c.4978	p.L1660F	0.001	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	102	0	0	36	46	56.1	-	-	-	A	30671982	G	A	30671982	3	1	851	1	0	0	0	0	1	0	0	0	9474	942	33	2	1315	2	MDC1	6	30671982	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		30671982	140443085	17	70566										
TNRC18	0	genome.wustl.edu	37	chr7	5352635	5352635	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gaggaggaggaagaggaggaTgaggaggaggaggaggagga	25	0	0	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	7	5352635	5352635	T	G	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	silent	c.7887	p.S2629	0.749	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	8	0	0	2	5	62.5	-	-	-	G	5352635	T	G	5352635	2	3	851	1	0	0	0	0	0	0	0	1	16434	1451	51	5		5	TNRC18	7	5352635	Silent	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09		5352635	153786028	18	70567										
XPO7	0	genome.wustl.edu	37	chr8	21837630	21837630	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gtacagatcgcttcagtcagAagatccctgtttaacaatgc	8	10	2	3			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	8	21837630	21837630	A	T	SNP	XPO7	ENST00000434536	human	ensembl	69_37n	1	known	missense	c.900	p.R300S	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227	105	0	0	107	20	15.75	-	-	-	T	21837630	A	T	21837630	3	4	851	1	0	0	0	0	1	0	0	0	17546	243	9	5	959	5	XPO7	8	21837630	Missense_Mutation	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09		21837630	124526392	19	70568										
FAM135B	0	genome.wustl.edu	37	chr8	139164077	139164077	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tgctatgacgcgtggtatttTtaaattaagacctttggttt	9	5	0	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	8	139164077	139164077	T	A	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	nonsense	c.2641	p.K881*	0.003	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	77	0	0	65	21	24.42	-	-	-	A	139164077	T	A	139164077	4	1	851	1	0	0	0	0	0	1	0	0	5489	1850	64	5	1611	5	FAM135B	8	139164077	Nonsense_Mutation	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	117326447	139164077	7199945	20	70569										
OPLAH	0	genome.wustl.edu	37	chr8	145108232	145108232	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cggaggtccgacaggttgtcGtgcaggtttctggttccgct	15	10	1	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	8	145108232	145108232	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.960	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	28	0	0	23	16	41.03	-	-	-	A	145108232	G	A	145108232	1	1	851	0	1	0	0	0	0	0	0	0	10949	1136	40	1		1	OPLAH	8	145108232	RNA	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	5944155	145108232	1255790	21	70570										
MED22	0	genome.wustl.edu	37	chr9	136211091	136211091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gtgtgcgcagctgctggttgCgctggtcaatggcctcgttc	15	11	1	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	9	136211091	136211091	C	T	SNP	MED22	ENST00000343730	human	ensembl	69_37n	-1	known	missense	c.302	p.R101H	0.997	NULL	NULL	-	no_errors	MED22	HGNC	ENSG00000148297	47	0	0	30	7	18.92	-	-	-	T	136211091	C	T	136211091	3	4	851	1	0	0	0	0	1	0	0	0	9511	768	27	1	318	1	MED22	9	136211091	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		136211091	5002340	22	70571										
GATA3	0	genome.wustl.edu	37	chr10	8115719	8115720	+	Frame_Shift_Del	DEL	TA	TA	-													0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tagattaacagacccctgacTatgaagaaggaaggcatcca							TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	10	8115719	8115720	TA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1068_1069	p.M357fs	0.993:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	32	0	0	15	7	31.82	-	-	-	-	8115720	TA	-	8115719	7	5	851	1	0	1	0	1	0	0	0	0	6305	1509	53	0	1086	0	GATA3	10	8115719	Frame_Shift_Del	DEL	TA	TCGA-E9-A1RC-01A-11D-A159-09		8115719	127419028	23	70572										
OR51E1	0	genome.wustl.edu	37	chr11	4674561	4674561	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tggtgcatcgctttagcaagCggcgtgactctccgctgccc	12	14	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	11	4674561	4674561	C	T	SNP	OR51E1	ENST00000396952	human	ensembl	69_37n	1	known	missense	c.805	p.R269W	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785	113	0	0	40	43	51.81	-	-	-	T	4674561	C	T	4674561	3	4	851	1	0	0	0	0	1	0	0	0	11167	759	27	1	807	1	OR51E1	11	4674561	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		4674561	130331955	24	70573										
OR5L2	0	genome.wustl.edu	37	chr11	55595368	55595368	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cctgctaattctcaccactaTcctgaagatacactctgcag	5	14	2	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	11	55595368	55595368	T	A	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.674	p.I225N	0.988	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	100	0	0	65	34	33.66	-	-	-	A	55595368	T	A	55595368	3	1	851	1	0	0	0	0	1	0	0	0	11244	1435	50	5	676	5	OR5L2	11	55595368	Missense_Mutation	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	50920807	55595368	79411148	25	70574										
SLCO1B3	0	genome.wustl.edu	37	chr12	21028243	21028243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gtttccttgtgtctggactaTtttccattatttcttccata	5	9	2	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	12	21028243	21028243	T	C	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	missense	c.802	p.F268L	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	233	0	0	134	100	42.74	-	-	-	C	21028243	T	C	21028243	3	2	851	1	0	0	0	0	1	0	0	0	14813	1493	52	5	828	5	SLCO1B3	12	21028243	Missense_Mutation	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09		21028243	112823652	26	70575										
CALCOCO1	0	genome.wustl.edu	37	chr12	54110179	54110179	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tttaagtgatggttctcctgTtgtgccacttggagctcagc	11	9	2	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	12	54110179	54110179	T	C	SNP	CALCOCO1	ENST00000550804	human	ensembl	69_37n	-1	known	silent	c.870	p.Q290	0.991	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822	76	0	0	25	19	43.18	-	-	-	C	54110179	T	C	54110179	2	2	851	1	0	0	0	0	0	0	0	1	2602	1722	60	5		5	CALCOCO1	12	54110179	Silent	SNP	T	TCGA-E9-A1RC-01A-11D-A159-09	33081936	54110179	79741716	27	70576										
CIT	0	genome.wustl.edu	37	chr12	120128239	120128239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tgtgctcgttgtacgtgggtGggcctcgcttgttggggctg	18	8	0	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	12	120128239	120128239	G	A	SNP	CIT	ENST00000261833	human	ensembl	69_37n	-1	known	missense	c.5777	p.P1926L	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CIT	HGNC	ENSG00000122966	20	0	0	14	6	30	-	-	-	A	120128239	G	A	120128239	3	1	851	1	0	0	0	0	1	0	0	0	3468	1348	47	4	314	4	CIT	12	120128239	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	66018060	120128239	13723656	28	70577										
RB1	0	genome.wustl.edu	37	chr13	48953760	48953760	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ttggagttcgcttgtattacCgagtaatggaatccatgctt	10	7	0	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	13	48953760	48953760	C	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	1	known	nonsense	c.1363	p.R455*	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	25	0	0	1	9	90	-	-	-	T	48953760	C	T	48953760	4	4	851	1	0	0	0	0	0	1	0	0	13181	644	23	1	1417	1	RB1	13	48953760	Nonsense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		48953760	66216118	29	70578										
SLC22A17	0	genome.wustl.edu	37	chr14	23818534	23818534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gcagaaagcccaagaggaatCggagggccatgacgcctgtg	15	10	0	3			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	14	23818534	23818534	C	A	SNP	SLC22A17	ENST00000206544	human	ensembl	69_37n	-1	known	missense	c.473	p.R158L	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096	26	0	0	31	9	22.5	-	-	-	A	23818534	C	A	23818534	3	1	851	1	0	0	0	0	1	0	0	0	14537	884	31	3	1171	3	SLC22A17	14	23818534	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		23818534	83531006	30	70579										
LRFN5	0	genome.wustl.edu	37	chr14	42360748	42360748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tttgcaacaataatgggcaaCacaaggtcaccaaggttagc	9	9	1	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	14	42360748	42360748	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	1	known	missense	c.1681	p.H561Y	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	64	0	0	52	20	27.78	-	-	-	T	42360748	C	T	42360748	3	4	851	1	0	0	0	0	1	0	0	0	9007	478	17	4	1687	4	LRFN5	14	42360748	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	18542214	42360748	64988792	31	70580										
PTGR2	0	genome.wustl.edu	37	chr14	74340785	74340785	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	acaccttggcagctatctcaAgtcgttgatggaggaggtat	12	8	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	14	74340785	74340785	A	G	SNP	PTGR2	ENST00000267568	human	ensembl	69_37n	1	known	silent	c.216	p.Q72	1.000	superfamily_GroES-like	pfam_ADH_C,superfamily_GroES-like	-	no_errors	PTGR2	HGNC	ENSG00000140043	112	0	0	37	54	59.34	-	-	-	G	74340785	A	G	74340785	2	3	851	1	0	0	0	0	0	0	0	1	12835	69	3	5		5	PTGR2	14	74340785	Silent	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09	31980037	74340785	33008755	32	70581										
THBS1	0	genome.wustl.edu	37	chr15	39886561	39886561	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	aggacccatctatgataaaaCctatgctggtggtagactag							TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	15	39886561	39886561	C	-	DEL	THBS1	ENST00000260356	human	ensembl	69_37n	1	known	frame_shift_del	c.3425	p.Y1143fs	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	86	0	0	30	7	18.92	-	-	-	-	39886561	C	-	39886561	7	5	851	1	0	1	0	1	0	0	0	0	15948	507	18	0	3503	0	THBS1	15	39886561	Frame_Shift_Del	DEL	C	TCGA-E9-A1RC-01A-11D-A159-09		39886561	62644831	33	70582										
ZNF710	0	genome.wustl.edu	37	chr15	90611283	90611283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	catgtgcgagaagtcctacaCgtccaagtacaacctggtga	10	11	0	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	15	90611283	90611283	C	T	SNP	ZNF710	ENST00000268154	human	ensembl	69_37n	1	known	missense	c.914	p.T305M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	39	0	0	16	28	63.64	-	-	-	T	90611283	C	T	90611283	3	4	851	1	0	0	0	0	1	0	0	0	18211	536	19	1	916	1	ZNF710	15	90611283	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	50724722	90611283	11920109	34	70583										
CBFB	0	genome.wustl.edu	37	chr16	67063695	67063695	+	Frame_Shift_Del	DEL	C	C	-													0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gcacgcttccagaacgcctgCcgcgacggccgctcggaaat							TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	16	67063695	67063695	C	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_del	c.144	p.R49fs	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	8	0	0	0	3	100	-	-	-	-	67063695	C	-	67063695	7	5	851	1	0	1	0	1	0	0	0	0	2724	747	26	0	150	0	CBFB	16	67063695	Frame_Shift_Del	DEL	C	TCGA-E9-A1RC-01A-11D-A159-09		67063695	23291058	35	70584										
NUTF2	0	genome.wustl.edu	37	chr16	67902251	67902251	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	tgcctttttcagattgacgcGtcatgccttacgtgggaagg	12	9	2	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	16	67902251	67902251	G	A	SNP	NUTF2	ENST00000219169	human	ensembl	69_37n	1	known	silent	c.108	p.A36	0.964	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NUTF2	HGNC	ENSG00000102898	88	0	0	9	55	85.94	-	-	-	A	67902251	G	A	67902251	2	1	851	1	0	0	0	0	0	0	0	1	10852	1132	40	1		1	NUTF2	16	67902251	Silent	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	838556	67902251	22452502	36	70585										
GIP	0	genome.wustl.edu	37	chr17	47038347	47038347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cgctggggttcttggctgggGagctgcaagggaacagtctc	17	9	2	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	17	47038347	47038347	G	A	SNP	GIP	ENST00000357424	human	ensembl	69_37n	-1	known	missense	c.353	p.S118F	0.108	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	GIP	HGNC	ENSG00000159224	55	0	0	33	8	19.51	-	-	-	A	47038347	G	A	47038347	3	1	851	1	0	0	0	0	1	0	0	0	6443	1174	41	2	116	2	GIP	17	47038347	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		47038347	34156863	37	70586										
NOL11	0	genome.wustl.edu	37	chr17	65714064	65714064	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	cgtacttaggtttgctcaaaAtggcagcgctggaggaagaa	13	7	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	17	65714064	65714064	A	C	SNP	NOL11	ENST00000253247	human	ensembl	69_37n	1	known	missense	c.1	p.M1L	1.000	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935	24	0	0	21	6	22.22	-	-	-	C	65714064	A	C	65714064	3	2	851	1	0	0	0	0	1	0	0	0	10593	101	4	5	3	5	NOL11	17	65714064	Missense_Mutation	SNP	A	TCGA-E9-A1RC-01A-11D-A159-09	18675717	65714064	15481146	38	70587										
TBCD	0	genome.wustl.edu	37	chr17	80730364	80730364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gtgacaaggcccgagatgcaGctgctgtccttgtgtccagg	14	11	0	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	17	80730364	80730364	G	T	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	missense	c.619	p.A207S	0.999	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	160	0	0	33	57	63.33	-	-	-	T	80730364	G	T	80730364	3	4	851	1	0	0	0	0	1	0	0	0	15728	971	34	4	641	4	TBCD	17	80730364	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	15016300	80730364	464846	39	70588										
ZNF555	0	genome.wustl.edu	37	chr19	2852514	2852514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	aatacaacacgtacggaaaaGtcttcatgcatcgccgcaca	7	12	2	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	19	2852514	2852514	G	T	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	1	known	missense	c.451	p.V151F	0.073	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	70	0	0	37	13	26	-	-	-	T	2852514	G	T	2852514	3	4	851	1	0	0	0	0	1	0	0	0	18082	1029	36	4	465	4	ZNF555	19	2852514	Missense_Mutation	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		2852514	56276469	40	70589										
OR10H5	0	genome.wustl.edu	37	chr19	15904918	15904918	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ctcgttggcttctctgccttCccccacctccagctgatgct	7	18	1	1			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	19	15904918	15904918	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	69_37n	1	known	silent	c.60	p.F20	0.994	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H5	HGNC	ENSG00000172519	192	0	0	56	26	31.71	-	-	-	T	15904918	C	T	15904918	2	4	851	1	0	0	0	0	0	0	0	1	10982	854	30	2		2	OR10H5	19	15904918	Silent	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	13052404	15904918	43224065	41	70590										
COMMD7	0	genome.wustl.edu	37	chr20	31315732	31315732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gaaggaggcttttcacgatgCttctgagggagccaagactg	14	8	2	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	20	31315732	31315732	C	T	SNP	COMMD7	ENST00000278980	human	ensembl	69_37n	-1	known	missense	c.209	p.S70N	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD7	HGNC	ENSG00000149600	112	0	0	77	38	33.04	-	-	-	T	31315732	C	T	31315732	3	4	851	1	0	0	0	0	1	0	0	0	3751	797	28	4	421	4	COMMD7	20	31315732	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		31315732	31709788	42	70591										
CELSR1	0	genome.wustl.edu	37	chr22	46763749	46763749	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	aggaatgcggtcctcagcagGgagctgcgggagggcaggat	19	8	1	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	22	46763749	46763749	G	T	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	silent	c.7956	p.S2652	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	21	0	0	11	5	31.25	-	-	-	T	46763749	G	T	46763749	2	4	851	1	0	0	0	0	0	0	0	1	3250	1219	43	4		4	CELSR1	22	46763749	Silent	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09		46763749	4540817	43	70592										
CNKSR2	0	genome.wustl.edu	37	chrX	21450902	21450902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	agttgtggatctgattggagCagccaagagtctgcttgcct	13	8	2	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	X	21450902	21450902	C	A	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.401	p.A134E	1.000	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	97	0	0	56	17	23.29	-	-	-	A	21450902	C	A	21450902	3	1	851	1	0	0	0	0	1	0	0	0	3637	710	25	4	411	4	CNKSR2	23	21450902	Missense_Mutation	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09		21450902	133819658	44	70593										
ELF4	0	genome.wustl.edu	37	chrX	129203349	129203349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	gaggtagtggggatctcctcGtctagcgacggtcccaattc	13	11	2	0			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	X	129203349	129203349	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	silent	c.1113	p.D371	0.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	62	0	0	24	9	27.27	-	-	-	A	129203349	G	A	129203349	2	1	851	1	0	0	0	0	0	0	0	1	5093	1136	40	1		1	ELF4	23	129203349	Silent	SNP	G	TCGA-E9-A1RC-01A-11D-A159-09	107752447	129203349	26067211	45	70594										
BGN	0	genome.wustl.edu	37	chrX	152770766	152770766	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	2	0.994628167771038	0.666162570888469	1.91521739130435	0.403203661327231	1	1	0	ctgcagaacaacgacatctcCgagctccgcaaggatgactt	9	13	1	2			TCGA-E9-A1RC-01A-11D-A159-09	TCGA-E9-A1RC-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6	2c3fdd88-5419-495a-b52b-45fd9de1bd51	X	152770766	152770766	C	T	SNP	BGN	ENST00000331595	human	ensembl	69_37n	1	known	silent	c.309	p.S103	0.000	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492	43	0	0	13	7	35	-	-	-	T	152770766	C	T	152770766	2	4	851	1	0	0	0	0	0	0	0	1	1423	639	23	1		1	BGN	23	152770766	Silent	SNP	C	TCGA-E9-A1RC-01A-11D-A159-09	23567417	152770766	2499794	46	70595										
IQCC	0	genome.wustl.edu	37	chr1	32673075	32673075	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	caggaagtttggccactacaCaaaaaaacattgctggggct	10	9	0	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	1	32673075	32673075	C	G	SNP	IQCC	ENST00000537469	human	ensembl	69_37n	1	known	missense	c.1033	p.Q345E	0.001	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCC	HGNC	ENSG00000160051	34	0	0	24	4	14.29	-	-	-	G	32673075	C	G	32673075	3	3	852	1	0	0	0	0	1	0	0	0	7858	479	17	4	1051	4	IQCC	1	32673075	Missense_Mutation	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09		32673075	216577546	1	70596										
SCN2A	0	genome.wustl.edu	37	chr2	166152440	166152440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	tgcagaagagaaagctaagaGacccaaacaggaacgcaagg	12	8	0	3			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	2	166152440	166152440	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.107	p.R36K	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	96	0	0	40	29	42.03	-	-	-	A	166152440	G	A	166152440	3	1	852	1	0	0	0	0	1	0	0	0	14004	942	33	2	109	2	SCN2A	2	166152440	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		166152440	77046933	2	70597										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	124	0	0	40	29	42.03	-	-	-	A	178936082	G	A	178936082	3	1	852	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		178936082	19086348	3	70598										
FBXL5	0	genome.wustl.edu	37	chr4	15629638	15629638	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gtgcaatgctgatagcaattGattcctccgcagactcttct	8	11	2	3			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	4	15629638	15629638	G	A	SNP	FBXL5	ENST00000341285	human	ensembl	69_37n	-1	known	missense	c.911	p.S304L	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL5	HGNC	ENSG00000118564	97	0	0	79	19	19.39	-	-	-	A	15629638	G	A	15629638	3	1	852	1	0	0	0	0	1	0	0	0	5768	1294	45	2	1184	2	FBXL5	4	15629638	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		15629638	175524638	4	70599										
BEND4	0	genome.wustl.edu	37	chr4	42145871	42145871	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gtgacagtgctcctgtctttCgttgtaacttgagccttcct	9	11	1	2			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	4	42145871	42145871	C	A	SNP	BEND4	ENST00000502486	human	ensembl	69_37n	-1	known	nonsense	c.628	p.E210*	0.996	NULL	pfam_BEN_domain	-	no_errors	BEND4	HGNC	ENSG00000188848	107	0	0	54	14	20.59	-	-	-	A	42145871	C	A	42145871	4	1	852	1	0	0	0	0	0	1	0	0	1404	893	31	3	992	3	BEND4	4	42145871	Nonsense_Mutation	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09	26516233	42145871	149008405	5	70600										
FAT4	0	genome.wustl.edu	37	chr4	126336088	126336088	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gcttcaggtgatagccttggGcagtttactgttgacaagaa	12	7	1	3			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	4	126336088	126336088	G	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	silent	c.5970	p.G1990	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	62	0	0	14	19	57.58	-	-	-	A	126336088	G	A	126336088	2	1	852	1	0	0	0	0	0	0	0	1	5738	1190	42	4		4	FAT4	4	126336088	Silent	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09	84190217	126336088	64818188	6	70601										
MAP3K1	0	genome.wustl.edu	37	chr5	56177410	56177411	+	Frame_Shift_Ins	INS	-	-	T													0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	tttcaggtataagaagctgcINStgtccctcttaacctttgct							TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	5	56177410	56177411	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.2383_2384	p.S796fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	95	0	0	71	34	32.38	-	-	-	T	56177411	-	T	56177410	7	5	852	1	0	1	1	0	0	0	0	0	9314	796	28	0	2437	0	MAP3K1	5	56177410	Frame_Shift_Ins	INS	-	TCGA-E9-A1RD-01A-11D-A159-09		56177410	124737850	7	70602										
MAP3K1	0	genome.wustl.edu	37	chr5	56178459	56178460	+	Frame_Shift_Ins	INS	-	-	A													0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	catctatgccttcaagtgatINSacaacagtaacttttaagtc							TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	5	56178459	56178460	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3432_3433	p.T1144fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	51	0	0	44	21	32.31	-	-	-	A	56178460	-	A	56178459	7	5	852	1	0	1	1	0	0	0	0	0	9314	1403	49	0	3486	0	MAP3K1	5	56178459	Frame_Shift_Ins	INS	-	TCGA-E9-A1RD-01A-11D-A159-09	1049	56178459	124736801	8	70603										
VCAN	0	genome.wustl.edu	37	chr5	82850848	82850848	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gacttccgttggactgatggCagcacactggtaagatgccc	12	11	0	2			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	5	82850848	82850848	C	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	silent	c.9726	p.G3242	0.999	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	171	0	0	100	62	38.04	-	-	-	T	82850848	C	T	82850848	2	4	852	1	0	0	0	0	0	0	0	1	17235	697	25	4		4	VCAN	5	82850848	Silent	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09	26672389	82850848	98064412	9	70604										
PCDHGA5	0	genome.wustl.edu	37	chr5	140745887	140745887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	ccttcacggtcaccgttgccGtggccgacaggatccctgac	11	16	2	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	5	140745887	140745887	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	missense	c.1990	p.V664M	0.097	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	31	0	0	36	9	20	-	-	-	A	140745887	G	A	140745887	3	1	852	1	0	0	0	0	1	0	0	0	11630	1145	40	1	1992	1	PCDHGA5	5	140745887	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09	57895039	140745887	40169373	10	70605										
PRSS35	0	genome.wustl.edu	37	chr6	84233305	84233305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	ctttccatctcaccagccccGcatttgaggcagatgctaag	8	14	1	2			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	6	84233305	84233305	G	A	SNP	PRSS35	ENST00000369700	human	ensembl	69_37n	1	known	missense	c.145	p.A49T	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PRSS35	HGNC	ENSG00000146250	99	0	0	47	36	43.37	-	-	-	A	84233305	G	A	84233305	3	1	852	1	0	0	0	0	1	0	0	0	12704	1087	38	1	147	1	PRSS35	6	84233305	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		84233305	86881762	11	70606										
DTX2	0	genome.wustl.edu	37	chr7	76126735	76126735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gcccaccagccctcccgcctCccgtctggcttccaaaagtc	7	21	1	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	7	76126735	76126735	C	T	SNP	DTX2	ENST00000324432	human	ensembl	69_37n	1	known	missense	c.1091	p.S364F	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	Clone_based_vega_gene	ENSG00000091073	91	0	0	73	10	12.05	-	-	-	T	76126735	C	T	76126735	3	4	852	1	0	0	0	0	1	0	0	0	4829	855	30	2	1105	2	DTX2	7	76126735	Missense_Mutation	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09		76126735	83011928	12	70607										
SLC25A32	0	genome.wustl.edu	37	chr8	104419920	104419920	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	tatatttggggttactccttGataaagtccccgtagtccat	8	9	0	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	8	104419920	104419920	G	C	SNP	SLC25A32	ENST00000297578	human	ensembl	69_37n	-1	known	missense	c.247	p.Q83E	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A32	HGNC	ENSG00000164933	115	0	0	43	55	56.12	-	-	-	C	104419920	G	C	104419920	3	2	852	1	0	0	0	0	1	0	0	0	14585	1299	45	2	724	2	SLC25A32	8	104419920	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		104419920	41944102	13	70608										
MBD6	0	genome.wustl.edu	37	chr12	57921444	57921444	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gctgggtgccagcctgctggGtgagtctgagggagtgtgaa	19	7	1	3			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	12	57921444	57921444	G	C	SNP	MBD6	ENST00000355673	human	ensembl	69_37n	1	known	splice_site	c.2236+1	e6+1	1.000	-	-	-	no_errors	MBD6	HGNC	ENSG00000166987	33	0	0	10	14	58.33	-	-	-	C	57921444	G	C	57921444	5	2	852	1	0	0	0	0	0	0	1	0	9419	1275	44	4	2259	4	MBD6	12	57921444	Splice_Site	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		57921444	75930451	14	70609										
ZFP106	0	genome.wustl.edu	37	chr15	42713309	42713309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	cctcacggcctgaatactgcCatcataacagccagtgtaaa	7	13	2	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	15	42713309	42713309	C	A	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.5398	p.G1800C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	50	0	0	54	12	18.18	-	-	-	A	42713309	C	A	42713309	3	1	852	1	0	0	0	0	1	0	0	0	17733	594	21	4	265	4	ZFP106	15	42713309	Missense_Mutation	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09		42713309	59818083	15	70610										
TBC1D3	0	genome.wustl.edu	37	chr17	36340138	36340138	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gattcttgttatcggcatcaAcgcctgttcgccttctacca	7	13	3	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	22	0	0	21	4	16	-	-	-	G	36340138	A	G	36340138	2	3	852	1	0	0	0	0	0	0	0	1	15712	40	2	5		5	TBC1D3	17	36340138	Silent	SNP	A	TCGA-E9-A1RD-01A-11D-A159-09		36340138	44855072	16	70611										
TOP2A	0	genome.wustl.edu	37	chr17	38556618	38556618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	ttatgagaggaggtgtcttcTcggtgccattcaacatgggt	13	7	3	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	17	38556618	38556618	T	C	SNP	TOP2A	ENST00000423485	human	ensembl	69_37n	-1	known	missense	c.2843	p.E948G	1.000	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_cen,smart_Topo_IIA_A/C	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_ATPase-like_ATP-bd,superfamily_Topo_IIA_cen,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	TOP2A	HGNC	ENSG00000131747	143	0	0	73	17	18.89	-	-	-	C	38556618	T	C	38556618	3	2	852	1	0	0	0	0	1	0	0	0	16461	1551	54	5	1804	5	TOP2A	17	38556618	Missense_Mutation	SNP	T	TCGA-E9-A1RD-01A-11D-A159-09	2216480	38556618	42638592	17	70612										
ABCA6	0	genome.wustl.edu	37	chr17	67081186	67081186	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	taccttgcgatggcgagcctCgcgtccgctttcctgagccc	11	16	0	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	17	67081186	67081186	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4167	p.A1389	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	19	0	0	15	8	34.78	-	-	-	T	67081186	C	T	67081186	2	4	852	1	0	0	0	0	0	0	0	1	36	871	31	1		1	ABCA6	17	67081186	Silent	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09	28524568	67081186	14114024	18	70613										
INSR	0	genome.wustl.edu	37	chr19	7141753	7141753	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	accattgggctccttcggctCctgccacatcaagtggacga	10	14	1	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	19	7141753	7141753	C	G	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.2617	p.E873Q	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	96	0	0	77	45	36.89	-	-	-	G	7141753	C	G	7141753	3	3	852	1	0	0	0	0	1	0	0	0	7827	864	30	2	1571	2	INSR	19	7141753	Missense_Mutation	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09		7141753	51987230	19	70614										
TIMM44	0	genome.wustl.edu	37	chr19	7992179	7992179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	cgcccacacgtacagcatccGcagcaccttgtcctgcaggg	10	17	0	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	19	7992179	7992179	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	missense	c.1252	p.R418W	1.000	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	19	0	0	16	4	20	-	-	-	A	7992179	G	A	7992179	3	1	852	1	0	0	0	0	1	0	0	0	16007	1086	38	1	110	1	TIMM44	19	7992179	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09	850426	7992179	51136804	20	70615										
KCNJ14	0	genome.wustl.edu	37	chr19	48967593	48967593	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	ctgtatgagctaggacgtgcCgagctggccagggctgactt	15	10	0	2			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	19	48967593	48967593	C	T	SNP	KCNJ14	ENST00000342291	human	ensembl	69_37n	1	known	silent	c.870	p.A290	0.001	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ14	HGNC	ENSG00000182324	98	0	0	95	21	17.95	-	-	-	T	48967593	C	T	48967593	2	4	852	1	0	0	0	0	0	0	0	1	8102	639	23	1		1	KCNJ14	19	48967593	Silent	SNP	C	TCGA-E9-A1RD-01A-11D-A159-09	40975414	48967593	10161390	21	70616										
ZNF814	0	genome.wustl.edu	37	chr19	58386210	58386210	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	cctcctgctggagtaatcctGacctgggcaaaaagtccttc	9	13	0	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	19	58386210	58386210	G	A	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.548	p.S183L	0.015	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	137	0	0	91	51	35.92	-	-	-	A	58386210	G	A	58386210	3	1	852	1	0	0	0	0	1	0	0	0	18269	1294	45	2	2023	2	ZNF814	19	58386210	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09	9418617	58386210	742773	22	70617										
PCNT	0	genome.wustl.edu	37	chr21	47808670	47808670	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	gtctcagaggggccctccagGacgccctgcgcaggctgctg	15	15	1	1			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	21	47808670	47808670	G	T	SNP	PCNT	ENST00000359568	human	ensembl	69_37n	1	known	missense	c.3478	p.D1160Y	0.029	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	27	0	0	28	5	15.15	-	-	-	T	47808670	G	T	47808670	3	4	852	1	0	0	0	0	1	0	0	0	11663	1174	41	2	3548	2	PCNT	21	47808670	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		47808670	321225	23	70618										
F8	0	genome.wustl.edu	37	chrX	154133122	154133122	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	5	0.149285233698485	2.58403361344538	1.75714285714286	2.92857142857143	0.206349206349206	0.776190476190475	0	aaataagcccaggctttgcaGtcaaactcatctttagtggg	9	9	3	0			TCGA-E9-A1RD-01A-11D-A159-09	TCGA-E9-A1RD-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	23f7a698-eab1-40f1-926c-c95d4ed8213d	11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c	X	154133122	154133122	G	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5550	p.D1850E	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	118	0	0	121	29	19.33	-	-	-	C	154133122	G	C	154133122	3	2	852	1	0	0	0	0	1	0	0	0	5387	1020	36	4	1577	4	F8	23	154133122	Missense_Mutation	SNP	G	TCGA-E9-A1RD-01A-11D-A159-09		154133122	1137438	24	70619										
USP1	0	genome.wustl.edu	37	chr1	62910497	62910497	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gaaacattcaagaaacatgcCaactcctaaaaaaagaagaa	5	8	1	3			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	62910497	62910497	C	T	SNP	USP1	ENST00000339950	human	ensembl	69_37n	1	known	nonsense	c.646	p.Q216*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	25	0	0	21	7	25	-	-	-	T	62910497	C	T	62910497	4	4	853	1	0	0	0	0	0	1	0	0	17137	595	21	4	664	4	USP1	1	62910497	Nonsense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		62910497	186340124	1	70620										
SPTA1	0	genome.wustl.edu	37	chr1	158627369	158627369	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	aggtcagccaggtactgctgGaactggacattggcttcaag	13	9	2	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	158627369	158627369	G	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.2703	p.F901L	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	80	0	0	74	19	20.43	-	-	-	T	158627369	G	T	158627369	3	4	853	1	0	0	0	0	1	0	0	0	15207	1165	41	2	4692	2	SPTA1	1	158627369	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	95716872	158627369	90623252	2	70621										
PRRX1	0	genome.wustl.edu	37	chr1	170695530	170695530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ttatctctcctgggggacagCgtctccgtacaggtgaatga	12	10	2	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	170695530	170695530	C	T	SNP	PRRX1	ENST00000239461	human	ensembl	69_37n	1	known	missense	c.587	p.A196V	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PRRX1	HGNC	ENSG00000116132	28	0	0	21	8	27.59	-	-	-	T	170695530	C	T	170695530	3	4	853	1	0	0	0	0	1	0	0	0	12692	768	27	1	597	1	PRRX1	1	170695530	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	12068161	170695530	78555091	3	70622										
QSOX1	0	genome.wustl.edu	37	chr1	180135688	180135688	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	aggagaccaacagtgcagtcTgcagagacttcaacatccct	9	12	2	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	180135688	180135688	T	A	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	1	known	missense	c.328	p.C110S	0.986	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	49	0	0	51	11	17.74	-	-	-	A	180135688	T	A	180135688	3	1	853	1	0	0	0	0	1	0	0	0	12966	1580	55	5	334	5	QSOX1	1	180135688	Missense_Mutation	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09	9440158	180135688	69114933	4	70623										
NCF2	0	genome.wustl.edu	37	chr1	183556058	183556058	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ctggtagtagagcatccctcGttggaagtaagccactgcca	11	11	0	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	183556058	183556058	G	A	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	nonsense	c.229	p.R77*	0.946	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	49	0	0	73	31	29.52	-	-	-	A	183556058	G	A	183556058	4	1	853	1	0	0	0	0	0	1	0	0	10289	1153	40	1	1407	1	NCF2	1	183556058	Nonsense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	3420370	183556058	65694563	5	70624										
CYB5R1	0	genome.wustl.edu	37	chr1	202936357	202936357	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ggagcgccttttcctccaccAcctgacaagccgacagatcc	8	17	0	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	202936357	202936357	A	C	SNP	CYB5R1	ENST00000473599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	13	0	0	5	6	54.55	-	-	-	C	202936357	A	C	202936357	1	2	853	0	1	0	0	0	0	0	0	0	4157	174	6	5		5	CYB5R1	1	202936357	RNA	SNP	A	TCGA-E9-A1RE-01A-11D-A159-09	19380299	202936357	46314264	6	70625										
C1orf35	0	genome.wustl.edu	37	chr1	228289842	228289843	+	Frame_Shift_Ins	INS	-	-	C													0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gaggctgccgaggtcccgggINScccgccgctctctacgcggt							TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	228289842	228289843	-	C	INS	C1orf35	ENST00000272139	human	ensembl	69_37n	-1	known	frame_shift_ins	c.472_471	p.P157fs	0.000:0.000	NULL	pfam_Kinase_phosphorylation_domain	-	no_errors	C1orf35	HGNC	ENSG00000143793	8	0	0	4	2	33.33	-	-	-	C	228289843	-	C	228289842	7	5	853	1	0	1	1	0	0	0	0	0	2058	1203	42	0	331	0	C1orf35	1	228289842	Frame_Shift_Ins	INS	-	TCGA-E9-A1RE-01A-11D-A159-09	25353485	228289842	20960779	7	70626										
IL17RE	0	genome.wustl.edu	37	chr3	9956194	9956194	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	agctccccgggaggagaagaTgcctggctcataggggtggg	18	9	1	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	9956194	9956194	T	C	SNP	IL17RE	ENST00000454190	human	ensembl	69_37n	1	known	silent	c.1332	p.D444	0.000	NULL	NULL	-	no_errors	IL17RE	HGNC	ENSG00000163701	28	0	0	20	36	63.16	-	-	-	C	9956194	T	C	9956194	2	2	853	1	0	0	0	0	0	0	0	1	7697	1479	51	5		5	IL17RE	3	9956194	Silent	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09		9956194	188066236	8	70627										
PDE12	0	genome.wustl.edu	37	chr3	57542637	57542637	+	Frame_Shift_Del	DEL	C	C	-													0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cgctacatcatggccgggttCcctgtgtgccccaaactcag							TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	57542637	57542637	C	-	DEL	PDE12	ENST00000311180	human	ensembl	69_37n	1	known	frame_shift_del	c.531	p.P178fs	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	26	0	0	25	9	26.47	-	-	-	-	57542637	C	-	57542637	7	5	853	1	0	1	0	1	0	0	0	0	11705	854	30	0	533	0	PDE12	3	57542637	Frame_Shift_Del	DEL	C	TCGA-E9-A1RE-01A-11D-A159-09	47586443	57542637	140479793	9	70628										
BOC	0	genome.wustl.edu	37	chr3	112969456	112969456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	caccgtccagaagcccggagGcactgtgatcttgggctgcg	14	13	1	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	112969456	112969456	G	A	SNP	BOC	ENST00000273395	human	ensembl	69_37n	1	known	missense	c.152	p.G51D	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	53	0	0	67	16	19.28	-	-	-	A	112969456	G	A	112969456	3	1	853	1	0	0	0	0	1	0	0	0	1486	1203	42	4	158	4	BOC	3	112969456	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	55426819	112969456	85052974	10	70629										
KY	0	genome.wustl.edu	37	chr3	134323234	134323234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ttcttccttaggctcagcagCccatgctcttgcttgccatt	7	14	3	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	134323234	134323234	C	T	SNP	KY	ENST00000423778	human	ensembl	69_37n	-1	known	silent	c.1173	p.G391	1.000	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611	27	0	0	8	17	68	-	-	-	T	134323234	C	T	134323234	2	4	853	1	0	0	0	0	0	0	0	1	8640	726	26	4		4	KY	3	134323234	Silent	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	21353778	134323234	63699196	11	70630										
PIK3CA	0	genome.wustl.edu	37	chr3	178916924	178916924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ctttttaaaagtaattgaacCagtaggcaaccgtgaagaaa	8	6	0	3			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	178916924	178916924	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.311	p.P104L	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	27	0	0	19	31	62	-	-	-	T	178916924	C	T	178916924	3	4	853	1	0	0	0	0	1	0	0	0	11987	594	21	4	313	4	PIK3CA	3	178916924	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	44593690	178916924	19105506	12	70631										
MRPS27	0	genome.wustl.edu	37	chr5	71616019	71616019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	accacttgccgcgccaggagCatcccgcgccgcactatgga	11	17	0	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	71616019	71616019	C	T	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	missense	c.30	p.M10I	0.000	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	46	0	0	32	11	25.58	-	-	-	T	71616019	C	T	71616019	3	4	853	1	0	0	0	0	1	0	0	0	9910	710	25	4	1258	4	MRPS27	5	71616019	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		71616019	109299241	13	70632										
FBN2	0	genome.wustl.edu	37	chr5	127685051	127685051	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	aatcttacccaaacatacacGgccagtcccatccaacgtaa	4	15	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	127685051	127685051	G	C	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.2977	p.R993G	1.000	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,superfamily_TB_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	29	0	0	42	11	20.75	-	-	-	C	127685051	G	C	127685051	3	2	853	1	0	0	0	0	1	0	0	0	5749	1116	39	3	5933	3	FBN2	5	127685051	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	56069032	127685051	53230209	14	70633										
ADAMTS19	0	genome.wustl.edu	37	chr5	129030517	129030517	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ccaagccagagccacagattCgaaagtgcaatgagcaacca	9	12	0	3			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	129030517	129030517	C	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	nonsense	c.2905	p.R969*	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	60	0	0	59	23	28.05	-	-	-	T	129030517	C	T	129030517	4	4	853	1	0	0	0	0	0	1	0	0	264	876	31	1	2979	1	ADAMTS19	5	129030517	Nonsense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	1345466	129030517	51884743	15	70634										
PCDHB8	0	genome.wustl.edu	37	chr5	140558070	140558070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gagcagtcctcctgggactgCgtttcctctgaagaatgctg	12	11	1	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	140558070	140558070	C	A	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	1	known	missense	c.455	p.A152E	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	68	0	0	41	20	32.79	-	-	-	A	140558070	C	A	140558070	3	1	853	1	0	0	0	0	1	0	0	0	11621	768	27	3	457	3	PCDHB8	5	140558070	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	11527553	140558070	40357190	16	70635										
ATP10B	0	genome.wustl.edu	37	chr5	160033805	160033805	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	catgacgcgcaacttgtctcGcaccagcttgactatcatac	7	14	2	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	160033805	160033805	G	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	nonsense	c.3127	p.R1043*	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	56	0	0	42	15	25.86	-	-	-	A	160033805	G	A	160033805	4	1	853	1	0	0	0	0	0	1	0	0	1121	1095	38	1	1290	1	ATP10B	5	160033805	Nonsense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	19475735	160033805	20881455	17	70636										
FARS2	0	genome.wustl.edu	37	chr6	5545516	5545516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cgtctcttctggtgtgaggaCgagcgcttcctgaagcagtt	13	10	2	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	6	5545516	5545516	C	T	SNP	FARS2	ENST00000274680	human	ensembl	69_37n	1	known	silent	c.1008	p.D336	0.986	pfam_Phenylalanyl-tRNA_Synthase,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982	63	0	0	57	25	30.49	-	-	-	T	5545516	C	T	5545516	2	4	853	1	0	0	0	0	0	0	0	1	5724	535	19	1		1	FARS2	6	5545516	Silent	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		5545516	165569551	18	70637										
MOCS1	0	genome.wustl.edu	37	chr6	39874865	39874865	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	aaaatgcttggattggctggTggggaattggggaacatcaa	15	4	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	6	39874865	39874865	T	G	SNP	MOCS1	ENST00000340692	human	ensembl	69_37n	-1	known	silent	c.1179	p.P393	1.000	NULL	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615	12	0	0	17	8	32	-	-	-	G	39874865	T	G	39874865	2	3	853	1	0	0	0	0	0	0	0	1	9762	1711	59	5		5	MOCS1	6	39874865	Silent	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09	34329349	39874865	131240202	19	70638										
TRIP6	0	genome.wustl.edu	37	chr7	100470878	100470878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	tcttgtgcaaggcctgcagcGcctggcgcatccaggagctc	13	14	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	100470878	100470878	G	A	SNP	TRIP6	ENST00000200457	human	ensembl	69_37n	1	known	missense	c.1384	p.A462T	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077	34	0	0	20	6	23.08	-	-	-	A	100470878	G	A	100470878	3	1	853	1	0	0	0	0	1	0	0	0	16655	1087	38	1	1418	1	TRIP6	7	100470878	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09		100470878	58667785	20	70639										
CTTNBP2	0	genome.wustl.edu	37	chr7	117375356	117375356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gcaggggctttcagtgctgcGattttcaagaggtgccaaaa	13	8	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	117375356	117375356	G	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.3655	p.R1219C	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	38	0	0	49	22	30.99	-	-	-	A	117375356	G	A	117375356	3	1	853	1	0	0	0	0	1	0	0	0	4077	1058	37	1	1372	1	CTTNBP2	7	117375356	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	16904478	117375356	41763307	21	70640										
PTPRZ1	0	genome.wustl.edu	37	chr7	121695126	121695126	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cttataattcaggactttatCttagaagctacacaggtaag	7	7	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	121695126	121695126	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	silent	c.6513	p.I2171	0.999	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	37	0	0	41	12	22.64	-	-	-	T	121695126	C	T	121695126	2	4	853	1	0	0	0	0	0	0	0	1	12897	903	32	2		2	PTPRZ1	7	121695126	Silent	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	4319770	121695126	37443537	22	70641										
ADRA1A	0	genome.wustl.edu	37	chr8	26722154	26722154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cagaggcccatgatggacgcGgtgcagcacagcacatccac	12	14	0	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	8	26722154	26722154	G	A	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	silent	c.333	p.T111	0.521	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	38	0	0	7	26	78.79	-	-	-	A	26722154	G	A	26722154	2	1	853	1	0	0	0	0	0	0	0	1	334	1103	39	1		1	ADRA1A	8	26722154	Silent	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09		26722154	119641868	23	70642										
PKHD1L1	0	genome.wustl.edu	37	chr8	110527447	110527447	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cacttcaacgtttggatgtcTatgtgaacaacttattggtc	8	8	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	8	110527447	110527447	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11602	p.Y3868H	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	83	0	0	371	179	32.55	-	-	-	C	110527447	T	C	110527447	3	2	853	1	0	0	0	0	1	0	0	0	12046	1522	53	5	11888	5	PKHD1L1	8	110527447	Missense_Mutation	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09	83805293	110527447	35836575	24	70643										
PTPRD	0	genome.wustl.edu	37	chr9	8504378	8504378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cagtccttgcagcctatatgAtgtccctggctcaatggtaa	9	11	1	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	8504378	8504378	A	G	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.1705	p.S569P	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	145	0	0	28	37	56.92	-	-	-	G	8504378	A	G	8504378	3	3	853	1	0	0	0	0	1	0	0	0	12882	333	12	5	4197	5	PTPRD	9	8504378	Missense_Mutation	SNP	A	TCGA-E9-A1RE-01A-11D-A159-09		8504378	132709053	25	70644										
SECISBP2	0	genome.wustl.edu	37	chr9	91934622	91934622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ccccagatttgccgggctcaAtgtggcatggttagagtcct	12	11	1	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	91934622	91934622	A	G	SNP	SECISBP2	ENST00000375807	human	ensembl	69_37n	1	known	missense	c.92	p.N31S	0.008	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	87	0	0	109	37	25.34	-	-	-	G	91934622	A	G	91934622	3	3	853	1	0	0	0	0	1	0	0	0	14094	101	4	5	98	5	SECISBP2	9	91934622	Missense_Mutation	SNP	A	TCGA-E9-A1RE-01A-11D-A159-09	83430244	91934622	49278809	26	70645										
LCN8	0	genome.wustl.edu	37	chr9	139650268	139650269	+	RNA	INS	-	-	CA													0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gggaacagcatggggaacagINStgcagggaacagtgcaggga							TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	139650268	139650269	-	CA	INS	LCN8	ENST00000482893	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005:0.005	-	-	-	no_errors	LCN8	HGNC	ENSG00000204001	11	0	0	2	2	50	-	-	-	CA	139650269	-	CA	139650268	6	5	853	0	1	1	1	0	0	0	0	0	8740	1044	36	0		0	LCN8	9	139650268	RNA	INS	-	TCGA-E9-A1RE-01A-11D-A159-09	47715646	139650268	1563163	27	70646										
UNC5B	0	genome.wustl.edu	37	chr10	73044530	73044530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	cgcggcagcaggtggaggagCtctttgggctggaggattac	18	8	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	10	73044530	73044530	C	A	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	missense	c.358	p.L120I	1.000	smart_Ig_sub	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	40	0	0	19	14	42.42	-	-	-	A	73044530	C	A	73044530	3	1	853	1	0	0	0	0	1	0	0	0	17089	797	28	4	368	4	UNC5B	10	73044530	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		73044530	62490217	28	70647										
OR52K1	0	genome.wustl.edu	37	chr11	4510284	4510284	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gtacccttctcttcattatcCaggctgatgcagccctccat	6	15	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	11	4510284	4510284	C	T	SNP	OR52K1	ENST00000307632	human	ensembl	69_37n	1	known	nonsense	c.154	p.Q52*	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52K1	HGNC	ENSG00000196778	111	0	0	131	44	25.14	-	-	-	T	4510284	C	T	4510284	4	4	853	1	0	0	0	0	0	1	0	0	11196	595	21	4	156	4	OR52K1	11	4510284	Nonsense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		4510284	130496232	29	70648										
GRASP	0	genome.wustl.edu	37	chr12	52407973	52407973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ccctaatggtgcaggagcagCggctggtgcatggtgagtag	17	8	0	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	12	52407973	52407973	C	T	SNP	GRASP	ENST00000293662	human	ensembl	69_37n	1	known	missense	c.670	p.R224W	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRASP	HGNC	ENSG00000161835	64	0	0	65	29	30.85	-	-	-	T	52407973	C	T	52407973	3	4	853	1	0	0	0	0	1	0	0	0	6806	759	27	1	696	1	GRASP	12	52407973	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		52407973	81443922	30	70649										
TRPC4	0	genome.wustl.edu	37	chr13	38213437	38213437	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	aagttatcagcagctcgcctCtgaaaaggaaaaggacattc	9	9	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	13	38213437	38213437	C	G	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	splice_site	c.2095-1	e8-1	1.000	-	-	-	no_errors	TRPC4	HGNC	ENSG00000133107	72	0	0	54	71	56.8	-	-	-	G	38213437	C	G	38213437	5	3	853	1	0	0	0	0	0	0	1	0	16676	927	32	2	866	2	TRPC4	13	38213437	Splice_Site	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		38213437	76956441	31	70650										
TUBGCP3	0	genome.wustl.edu	37	chr13	113140381	113140381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ctccctggctttgtaatgctCgttgaagtccagcctgaagc	10	12	0	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	13	113140381	113140381	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.2650	p.E884K	1.000	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	43	0	0	28	9	24.32	-	-	-	T	113140381	C	T	113140381	3	4	853	1	0	0	0	0	1	0	0	0	16864	893	31	1	77	1	TUBGCP3	13	113140381	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	74926944	113140381	2029497	32	70651										
RYR3	0	genome.wustl.edu	37	chr15	33872233	33872233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	tatagaagaagtcctgcagaCcctacaggacttgatcgcct	9	11	0	4			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	15	33872233	33872233	C	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.1325	p.T442N	1.000	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	45	0	0	22	19	46.34	-	-	-	A	33872233	C	A	33872233	3	1	853	1	0	0	0	0	1	0	0	0	13856	507	18	4	1375	4	RYR3	15	33872233	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09		33872233	68659159	33	70652										
PLA2G4D	0	genome.wustl.edu	37	chr15	42374005	42374005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	tgtcccttaccagccctctgCcttgagctgcagcctcactc	7	18	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	15	42374005	42374005	C	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.811	p.A271T	0.260	smart_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	53	0	0	26	15	36.59	-	-	-	T	42374005	C	T	42374005	3	4	853	1	0	0	0	0	1	0	0	0	12078	739	26	4	1689	4	PLA2G4D	15	42374005	Missense_Mutation	SNP	C	TCGA-E9-A1RE-01A-11D-A159-09	8501772	42374005	60157387	34	70653										
HS3ST4	0	genome.wustl.edu	37	chr16	26147331	26147331	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	acaggattttctaggcctcaAacgtgttgtgactgagaagc	11	8	2	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	16	26147331	26147331	A	C	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	1	known	missense	c.1133	p.K378T	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	29	0	0	50	11	18.03	-	-	-	C	26147331	A	C	26147331	3	2	853	1	0	0	0	0	1	0	0	0	7418	14	1	5	1139	5	HS3ST4	16	26147331	Missense_Mutation	SNP	A	TCGA-E9-A1RE-01A-11D-A159-09		26147331	64207422	35	70654										
ITGA3	0	genome.wustl.edu	37	chr17	48166523	48166523	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	tcagatcatgcccaagtaccAcgcagtgcggatccgggagg	13	12	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	48166523	48166523	A	G	SNP	ITGA3	ENST00000007722	human	ensembl	69_37n	1	novel	missense	c.3095	p.H1032R	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	43	0	0	72	16	18.18	-	-	-	G	48166523	A	G	48166523	3	3	853	1	0	0	0	0	1	0	0	0	7931	159	6	5	3308	5	ITGA3	17	48166523	Missense_Mutation	SNP	A	TCGA-E9-A1RE-01A-11D-A159-09		48166523	33028687	36	70655										
GRIN2C	0	genome.wustl.edu	37	chr17	72846369	72846369	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ccaatcatgccgttccatacGccgcgcacccgcttgccatg	8	18	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	72846369	72846369	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	silent	c.1467	p.G489	0.856	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	24	0	0	13	6	31.58	-	-	-	A	72846369	G	A	72846369	2	1	853	1	0	0	0	0	0	0	0	1	6832	1074	38	1		1	GRIN2C	17	72846369	Silent	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	24679846	72846369	8348841	37	70656										
MAST1	0	genome.wustl.edu	37	chr19	12962989	12962989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ccgaaggacacgccaaggagGgccaccttgtgaagacggac	14	12	0	2			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	12962989	12962989	G	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.937	p.G313S	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	27	0	0	22	10	31.25	-	-	-	A	12962989	G	A	12962989	3	1	853	1	0	0	0	0	1	0	0	0	9395	1232	43	4	971	4	MAST1	19	12962989	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09		12962989	46165994	38	70657										
STX10	0	genome.wustl.edu	37	chr19	13255448	13255448	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gaccccgtccatgcgggactGggtgtggtccatctcttggg	15	12	1	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	13255448	13255448	G	C	SNP	STX10	ENST00000587230	human	ensembl	69_37n	-1	known	missense	c.616	p.Q206E	0.993	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX10	HGNC	ENSG00000104915	43	0	0	40	11	21.15	-	-	-	C	13255448	G	C	13255448	3	2	853	1	0	0	0	0	1	0	0	0	15427	1357	47	4	140	4	STX10	19	13255448	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	292459	13255448	45873535	39	70658										
AKAP8L	0	genome.wustl.edu	37	chr19	15512077	15512077	+	Frame_Shift_Del	DEL	G	G	-													0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	gcccccacctcgcatgccctGgaacatgccgtactcgggga							TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	15512077	15512077	G	-	DEL	AKAP8L	ENST00000397410	human	ensembl	69_37n	-1	known	frame_shift_del	c.700	p.Q234fs	1.000	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243	28	0	0	17	3	15	-	-	-	-	15512077	G	-	15512077	7	5	853	1	0	1	0	1	0	0	0	0	458	1357	47	0	1280	0	AKAP8L	19	15512077	Frame_Shift_Del	DEL	G	TCGA-E9-A1RE-01A-11D-A159-09	2256629	15512077	43616906	40	70659										
SLC7A9	0	genome.wustl.edu	37	chr19	33355671	33355671	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	acgatgatggagatgccactGatgaggcccagctgggtgtg	16	8	0	4			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	33355671	33355671	G	A	SNP	SLC7A9	ENST00000023064	human	ensembl	69_37n	-1	known	silent	c.99	p.I33	0.991	pirsf_AA/rel_permease1	pfam_AA-permease_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	60	0	0	27	17	38.64	-	-	-	A	33355671	G	A	33355671	2	1	853	1	0	0	0	0	0	0	0	1	14794	1280	45	2		2	SLC7A9	19	33355671	Silent	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	17843594	33355671	25773312	41	70660										
DMD	0	genome.wustl.edu	37	chrX	32366618	32366618	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ttgtatatctgagttaaactGctccaattccttcaaaggaa	6	8	2	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	32366618	32366618	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5353	p.Q1785K	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	111	0	0	133	22	14.19	-	-	-	T	32366618	G	T	32366618	3	4	853	1	0	0	0	0	1	0	0	0	4616	1328	46	4	6020	4	DMD	23	32366618	Missense_Mutation	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09		32366618	122903942	42	70661										
RPGR	0	genome.wustl.edu	37	chrX	38146589	38146589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	atttccttgttcaatcaattTcctgccataccgtatgtttt	4	10	2	0			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	38146589	38146589	T	C	SNP	RPGR	ENST00000339363	human	ensembl	69_37n	-1	known	missense	c.2278	p.K760E	0.000	superfamily_Reg_csome_cond/b-lactamase_inh	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	14	0	0	2	7	77.78	-	-	-	C	38146589	T	C	38146589	3	2	853	1	0	0	0	0	1	0	0	0	13634	1798	62	5		5	RPGR	23	38146589	Missense_Mutation	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09	5779971	38146589	117123971	43	70662										
GNL3L	0	genome.wustl.edu	37	chrX	54569444	54569444	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	ctggatgacgaggccacgagGaaggcttattacaaggagtt	14	7	0	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	54569444	54569444	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	silent	c.363	p.R121	0.997	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	56	0	0	77	40	34.19	-	-	-	A	54569444	G	A	54569444	2	1	853	1	0	0	0	0	0	0	0	1	6590	1165	41	2		2	GNL3L	23	54569444	Silent	SNP	G	TCGA-E9-A1RE-01A-11D-A159-09	16422855	54569444	100701116	44	70663										
FAM70A	0	genome.wustl.edu	37	chrX	119421019	119421019	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.884573867541399	1.00754716981132	2.79874213836478	0.763293310463122	1	1	0	tctggctcacctcctcagctTccttctgtgatgtcttggga	9	13	5	1			TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	119421019	119421019	T	C	SNP	FAM70A	ENST00000309720	human	ensembl	69_37n	-1	known	missense	c.413	p.E138G	1.000	NULL	NULL	-	no_errors	FAM70A	HGNC	ENSG00000125355	82	0	0	53	23	30.26	-	-	-	C	119421019	T	C	119421019	3	2	853	1	0	0	0	0	1	0	0	0	5650	1783	62	5	660	5	FAM70A	23	119421019	Missense_Mutation	SNP	T	TCGA-E9-A1RE-01A-11D-A159-09	64851575	119421019	35849541	45	70664										
TNFRSF25	0	genome.wustl.edu	37	chr1	6522132	6522132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctgggtctcggggtagccagGggtccagctgttacccacca	14	13	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	6522132	6522132	G	T	SNP	TNFRSF25	ENST00000377782	human	ensembl	69_37n	-1	known	missense	c.874	p.P292T	0.000	NULL	pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_25	-	no_errors	TNFRSF25	HGNC	ENSG00000215788	95	0	0	20	7	25.93	-	-	-	T	6522132	G	T	6522132	3	4	854	1	0	0	0	0	1	0	0	0	16391	1232	43	4	414	4	TNFRSF25	1	6522132	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		6522132	242728489	1	70665										
CLCN6	0	genome.wustl.edu	37	chr1	11893963	11893963	+	Frame_Shift_Del	DEL	T	T	-													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gccccgtcactctggccttgTtcttcgttctctatttcttg							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	11893963	11893963	T	-	DEL	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	frame_shift_del	c.1402	p.F468fs	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	262	0	0	68	44	38.6	-	-	-	-	11893963	T	-	11893963	7	5	854	1	0	1	0	1	0	0	0	0	3497	1725	60	0	1470	0	CLCN6	1	11893963	Frame_Shift_Del	DEL	T	TCGA-E9-A1RF-01A-11D-A159-09	5371831	11893963	237356658	2	70666										
IL12RB2	0	genome.wustl.edu	37	chr1	67855764	67855764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	agtggtgtagcagagaaattCcagatccagcaaatagcact	10	8	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	67855764	67855764	C	T	SNP	IL12RB2	ENST00000262345	human	ensembl	69_37n	1	known	missense	c.1999	p.P667S	1.000	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	117	0	0	38	6	13.64	-	-	-	T	67855764	C	T	67855764	3	4	854	1	0	0	0	0	1	0	0	0	7681	855	30	2	2053	2	IL12RB2	1	67855764	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	55961801	67855764	181394857	3	70667										
GBP4	0	genome.wustl.edu	37	chr1	89658761	89658761	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcaggattttgccctgattaGctctgctagctcagtcacat	9	11	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	89658761	89658761	G	C	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	missense	c.496	p.L166V	0.061	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	177	0	0	48	25	34.25	-	-	-	C	89658761	G	C	89658761	3	2	854	1	0	0	0	0	1	0	0	0	6326	962	34	4	1454	4	GBP4	1	89658761	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	21802997	89658761	159591860	4	70668										
GPR88	0	genome.wustl.edu	37	chr1	101004699	101004699	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	atctatctcgtgtcgtccttCcgaaagctgcagaccaccag	8	14	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	101004699	101004699	C	T	SNP	GPR88	ENST00000315033	human	ensembl	69_37n	1	known	silent	c.177	p.F59	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR88	HGNC	ENSG00000181656	21	0	0	13	5	27.78	-	-	-	T	101004699	C	T	101004699	2	4	854	1	0	0	0	0	0	0	0	1	6767	854	30	2		2	GPR88	1	101004699	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	11345938	101004699	148245922	5	70669										
TBX15	0	genome.wustl.edu	37	chr1	119467310	119467310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	attgttggtaagcttgagttTgtcaaaactgaccacctgtc	9	8	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	119467310	119467310	T	C	SNP	TBX15	ENST00000369429	human	ensembl	69_37n	-1	known	missense	c.652	p.K218E	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX15	HGNC	ENSG00000092607	104	0	0	28	10	26.32	-	-	-	C	119467310	T	C	119467310	3	2	854	1	0	0	0	0	1	0	0	0	15747	1821	63	5	1176	5	TBX15	1	119467310	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	18462611	119467310	129783311	6	70670										
POLR3GL	0	genome.wustl.edu	37	chr1	145457582	145457582	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttccgcactcggatctttagCtcccggggtagacgccgcca	11	15	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	145457582	145457582	C	A	SNP	POLR3GL	ENST00000369314	human	ensembl	69_37n	-1	known	missense	c.348	p.E116D	1.000	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851	117	0	0	82	12	12.77	-	-	-	A	145457582	C	A	145457582	3	1	854	1	0	0	0	0	1	0	0	0	12309	796	28	4	324	4	POLR3GL	1	145457582	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	25990272	145457582	103793039	7	70671										
HIST2H2AC	0	genome.wustl.edu	37	chr1	149858554	149858554	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cgtggcaaacaaggaggcaaGgcccgcgccaaggccaagtc	14	13	0	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	149858554	149858554	G	A	SNP	HIST2H2AC	ENST00000331380	human	ensembl	69_37n	1	known	silent	c.30	p.K10	0.991	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	70	0	0	52	13	20	-	-	-	A	149858554	G	A	149858554	2	1	854	1	0	0	0	0	0	0	0	1	7229	991	35	4		4	HIST2H2AC	1	149858554	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	4400972	149858554	99392067	8	70672										
CGN	0	genome.wustl.edu	37	chr1	151492732	151492732	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aggccaccatctatggcatcCtgagggaggggtgagtgggg	18	8	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	151492732	151492732	C	T	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	silent	c.964	p.L322	1.000	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	41	0	0	23	6	20.69	-	-	-	T	151492732	C	T	151492732	2	4	854	1	0	0	0	0	0	0	0	1	3332	680	24	4		4	CGN	1	151492732	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	1634178	151492732	97757889	9	70673										
RPTN	0	genome.wustl.edu	37	chr1	152128108	152128108	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctctggtcttgtctgtctatCttaccatagtgggaactctg	9	10	6	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	152128108	152128108	C	G	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.1467	p.K489N	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	577	1	0.17	304	53	14.85	-	-	-	G	152128108	C	G	152128108	3	3	854	1	0	0	0	0	1	0	0	0	13750	912	32	2	891	2	RPTN	1	152128108	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	635376	152128108	97122513	10	70674										
SCYL3	0	genome.wustl.edu	37	chr1	169825046	169825046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	atgctagagaaggggttctcCaagattggcgagatctgact	13	7	2	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	169825046	169825046	C	T	SNP	SCYL3	ENST00000367770	human	ensembl	69_37n	-1	known	silent	c.1365	p.L455	0.299	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457	134	0	0	64	8	11.11	-	-	-	T	169825046	C	T	169825046	2	4	854	1	0	0	0	0	0	0	0	1	14037	593	21	4		4	SCYL3	1	169825046	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	17696938	169825046	79425575	11	70675										
HMCN1	0	genome.wustl.edu	37	chr1	185892721	185892721	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttctttctcaaagtaacaggCtatgataaagatgattacct	6	7	2	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	185892721	185892721	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.1221	p.G407	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	136	0	0	78	17	17.89	-	-	-	A	185892721	C	A	185892721	2	1	854	1	0	0	0	0	0	0	0	1	7271	784	28	4		4	HMCN1	1	185892721	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	16067675	185892721	63357900	12	70676										
OPTC	0	genome.wustl.edu	37	chr1	203468972	203468972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctcggggatacagcctgcagCcttcagggtgagtcaaggcc	14	12	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	203468972	203468972	C	T	SNP	OPTC	ENST00000367222	human	ensembl	69_37n	1	known	missense	c.725	p.A242V	0.251	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OPTC	HGNC	ENSG00000188770	57	0	0	34	5	12.82	-	-	-	T	203468972	C	T	203468972	3	4	854	1	0	0	0	0	1	0	0	0	10961	739	26	4	739	4	OPTC	1	203468972	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	17576251	203468972	45781649	13	70677										
NSL1	0	genome.wustl.edu	37	chr1	212912896	212912896	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cttcatggcttcactgatctCctttgctactgtttcccctc	5	15	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	212912896	212912896	C	G	SNP	NSL1	ENST00000366977	human	ensembl	69_37n	-1	known	missense	c.547	p.E183Q	0.988	pfam_Kinetochore_Mis14	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697	324	0	0	160	41	20.4	-	-	-	G	212912896	C	G	212912896	3	3	854	1	0	0	0	0	1	0	0	0	10746	864	30	2	306	2	NSL1	1	212912896	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	9443924	212912896	36337725	14	70678										
OBSCN	0	genome.wustl.edu	37	chr1	228521396	228521396	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	accctggagatcatctccgtCacccgggaggactctggcca	11	15	4	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	228521396	228521396	C	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.15969	p.V5323	0.827	pfam_Ig_I-set,smart_Ig_sub2,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	54	0	0	61	13	17.57	-	-	-	A	228521396	C	A	228521396	2	1	854	1	0	0	0	0	0	0	0	1	10885	813	29	2		2	OBSCN	1	228521396	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	15608500	228521396	20729225	15	70679										
GNPAT	0	genome.wustl.edu	37	chr1	231411054	231411054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tcagaaaattcacaagtcagCttctcgatcaaggtcagtca	7	10	7	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	231411054	231411054	C	T	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	1	known	missense	c.1831	p.L611F	0.999	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	161	0	0	109	13	10.66	-	-	-	T	231411054	C	T	231411054	3	4	854	1	0	0	0	0	1	0	0	0	6593	797	28	4	1881	4	GNPAT	1	231411054	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	2889658	231411054	17839567	16	70680										
FMN2	0	genome.wustl.edu	37	chr1	240494024	240494024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctttggattagacattcttcCaaaactgaaagatgtcaaga	7	7	2	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	240494024	240494024	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	missense	c.4559	p.P1520L	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	156	0	0	27	44	61.97	-	-	-	T	240494024	C	T	240494024	3	4	854	1	0	0	0	0	1	0	0	0	5996	594	21	4	4601	4	FMN2	1	240494024	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	9082970	240494024	8756597	17	70681										
KIDINS220	0	genome.wustl.edu	37	chr2	8919137	8919137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aggcaagtggactatgttgcGcatgtagtcatggccattta	12	7	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	8919137	8919137	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.2503	p.R835C	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	208	0	0	70	18	20.22	-	-	-	A	8919137	G	A	8919137	3	1	854	1	0	0	0	0	1	0	0	0	8323	1087	38	1	2860	1	KIDINS220	2	8919137	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		8919137	234280236	18	70682										
ATAD2B	0	genome.wustl.edu	37	chr2	24086409	24086409	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tttacctgtgccaggagggcCataaaacaaacagcccctag	9	12	0	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	24086409	24086409	C	A	SNP	ATAD2B	ENST00000238789	human	ensembl	69_37n	-1	known	missense	c.1321	p.G441C	1.000	pfam_ATPase_AAA_core,pfam_IstB_ATP-bd,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778	68	0	0	25	14	35.9	-	-	-	A	24086409	C	A	24086409	3	1	854	1	0	0	0	0	1	0	0	0	1076	594	21	4	3123	4	ATAD2B	2	24086409	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	15167272	24086409	219112964	19	70683										
CTNNA2	0	genome.wustl.edu	37	chr2	80773158	80773158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cagaggccgtggatgacatcAcctcagtggatgacttcctc	11	12	2	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	80773158	80773158	A	C	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.1612	p.T538P	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	81	0	0	32	6	15.79	-	-	-	C	80773158	A	C	80773158	3	2	854	1	0	0	0	0	1	0	0	0	4045	159	6	5	1340	5	CTNNA2	2	80773158	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	56686749	80773158	162426215	20	70684										
RETSAT	0	genome.wustl.edu	37	chr2	85570908	85570908	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tggtgagtggggatcctgcaGtcacactctccacctgaggg	14	11	2	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	85570908	85570908	G	C	SNP	RETSAT	ENST00000295802	human	ensembl	69_37n	-1	known	missense	c.1547	p.T516S	0.003	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445	52	0	0	24	9	27.27	-	-	-	C	85570908	G	C	85570908	3	2	854	1	0	0	0	0	1	0	0	0	13321	1029	36	4	293	4	RETSAT	2	85570908	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	4797750	85570908	157628465	21	70685										
DPP10	0	genome.wustl.edu	37	chr2	116066924	116066924	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tatgtcagtcatcctcttaaCcccaggtaatctgtctttat	5	11	5	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	116066924	116066924	C	G	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.182	p.T61S	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	270	0	0	44	22	33.33	-	-	-	G	116066924	C	G	116066924	3	3	854	1	0	0	0	0	1	0	0	0	4762	507	18	4	347	4	DPP10	2	116066924	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	30496016	116066924	127132449	22	70686										
GPR17	0	genome.wustl.edu	37	chr2	128407626	128407626	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gggctggatccagaaagcccCcaagagagatgctgaaactc	12	11	0	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	128407626	128407626	C	A	SNP	GPR17	ENST00000272644	human	ensembl	69_37n	1	known	missense	c.40	p.P14T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230	54	0	0	17	5	22.73	-	-	-	A	128407626	C	A	128407626	3	1	854	1	0	0	0	0	1	0	0	0	6717	623	22	4	42	4	GPR17	2	128407626	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	12340702	128407626	114791747	23	70687										
NCKAP5	0	genome.wustl.edu	37	chr2	133483301	133483301	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cactattactgccaccgctgGcagagtacgtacacattctg	8	13	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	133483301	133483301	G	T	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.5612	p.A1871D	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	150	0	0	38	9	18.75	-	-	-	T	133483301	G	T	133483301	3	4	854	1	0	0	0	0	1	0	0	0	10295	1203	42	4	125	4	NCKAP5	2	133483301	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	5075675	133483301	109716072	24	70688										
YSK4	0	genome.wustl.edu	37	chr2	135756375	135756375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctggttacagacttggaaatGttcagttctaaacaagatct	8	7	3	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	135756375	135756375	G	T	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.507	p.N169K	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	127	0	0	36	8	18.18	-	-	-	T	135756375	G	T	135756375	3	4	854	1	0	0	0	0	1	0	0	0	17592	1368	48	4	3503	4	YSK4	2	135756375	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	2273074	135756375	107442998	25	70689										
STAM2	0	genome.wustl.edu	37	chr2	152977211	152977211	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttctgataagatgacatatcCacagacatccccatttgctg	6	11	1	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	152977211	152977211	C	T	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	silent	c.1455	p.V485	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	137	0	0	42	8	16	-	-	-	T	152977211	C	T	152977211	2	4	854	1	0	0	0	0	0	0	0	1	15340	581	21	4		4	STAM2	2	152977211	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	17220836	152977211	90222162	26	70690										
TTN	0	genome.wustl.edu	37	chr2	179438827	179438827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tagcatcagatggctcagatGgtggactgatggcacctgca	13	9	2	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	179438827	179438827	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.64328	p.P21443Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	114	0	0	52	9	14.75	-	-	-	T	179438827	G	T	179438827	3	4	854	1	0	0	0	0	1	0	0	0	16832	1348	47	4	36095	4	TTN	2	179438827	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	26461616	179438827	63760546	27	70691										
NCKAP1	0	genome.wustl.edu	37	chr2	183843584	183843584	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgttttacacttagggaagtCatagtgttaacaaaagagga	10	4	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	183843584	183843584	C	A	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.1419	p.M473I	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	95	0	0	26	7	21.21	-	-	-	A	183843584	C	A	183843584	3	1	854	1	0	0	0	0	1	0	0	0	10293	826	29	2	2057	2	NCKAP1	2	183843584	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	4404757	183843584	59355789	28	70692										
MDH1B	0	genome.wustl.edu	37	chr2	207625725	207625725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctgttttagcataatatggaCaatctgctctacctaaaaga	6	8	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	207625725	207625725	C	A	SNP	MDH1B	ENST00000374412	human	ensembl	69_37n	-1	known	missense	c.35	p.C12F	1.000	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400	136	0	0	33	7	17.5	-	-	-	A	207625725	C	A	207625725	3	1	854	1	0	0	0	0	1	0	0	0	9480	478	17	4	1565	4	MDH1B	2	207625725	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	23782141	207625725	35573648	29	70693										
TNS1	0	genome.wustl.edu	37	chr2	218745658	218745658	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cgatgcccactgaagttgtcGtaggagtcccagcggatgag	14	10	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	218745658	218745658	G	A	SNP	TNS1	ENST00000453356	human	ensembl	69_37n	-1	putative	nonsense	c.343	p.R115*	0.028	NULL	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TNS1	HGNC	ENSG00000079308	90	0	0	42	6	12.5	-	-	-	A	218745658	G	A	218745658	4	1	854	1	0	0	0	0	0	1	0	0	16438	1140	40	1	4262	1	TNS1	2	218745658	Nonsense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	11119933	218745658	24453715	30	70694										
DOCK10	0	genome.wustl.edu	37	chr2	225652079	225652079	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cgctcagacttccagagaaaCtccacacacatgtatagctg	7	13	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	225652079	225652079	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	silent	c.5454	p.E1818	0.998	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	170	0	0	67	14	17.28	-	-	-	T	225652079	C	T	225652079	2	4	854	1	0	0	0	0	0	0	0	1	4720	564	20	4		4	DOCK10	2	225652079	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	6906421	225652079	17547294	31	70695										
SP140L	0	genome.wustl.edu	37	chr2	231266471	231266471	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggttacccccaagtggagggGtttgtacaagacatgcgcct	13	10	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	231266471	231266471	G	T	SNP	SP140L	ENST00000415673	human	ensembl	69_37n	1	known	silent	c.1593	p.G531	0.031	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404	92	0	0	27	10	27.03	-	-	-	T	231266471	G	T	231266471	2	4	854	1	0	0	0	0	0	0	0	1	15052	1248	44	4		4	SP140L	2	231266471	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	5614392	231266471	11932902	32	70696										
MYD88	0	genome.wustl.edu	37	chr3	38182756	38182756	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tggttctggactcgccttgcCaaggccttgtccctgccctg	11	15	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	38182756	38182756	C	G	SNP	MYD88	ENST00000417037	human	ensembl	69_37n	1	known	silent	c.933	p.A311	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_TIR_dom	pfam_TIR_dom,pfam_Death,superfamily_DEATH-like,superfamily_TIR_dom,smart_Death,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936	119	0	0	43	14	24.56	-	-	-	G	38182756	C	G	38182756	2	3	854	1	0	0	0	0	0	0	0	1	10095	581	21	4		4	MYD88	3	38182756	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09		38182756	159839674	33	70697										
MOBP	0	genome.wustl.edu	37	chr3	39543701	39543701	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gatcggaaatacagcatctgTaagagcggctgcttctacca	10	10	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	39543701	39543701	T	G	SNP	MOBP	ENST00000354668	human	ensembl	69_37n	1	known	missense	c.141	p.C47W	0.951	NULL	NULL	-	no_errors	MOBP	HGNC	ENSG00000168314	45	0	0	26	4	13.33	-	-	-	G	39543701	T	G	39543701	3	3	854	1	0	0	0	0	1	0	0	0	9760	1644	57	5	143	5	MOBP	3	39543701	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	1360945	39543701	158478729	34	70698										
ATP6V1A	0	genome.wustl.edu	37	chr3	113524322	113524322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aaatcacatggtccattattCgtgagcacatgggagacatc	9	9	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	113524322	113524322	C	T	SNP	ATP6V1A	ENST00000273398	human	ensembl	69_37n	1	known	missense	c.1711	p.R571C	1.000	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	156	1	0.64	87	14	13.86	-	-	-	T	113524322	C	T	113524322	3	4	854	1	0	0	0	0	1	0	0	0	1181	884	31	1	1761	1	ATP6V1A	3	113524322	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	73980621	113524322	84498108	35	70699										
PLXND1	0	genome.wustl.edu	37	chr3	129286352	129286352	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gaccttggggaagaaggtgcGggtcacgaagtgcttatact	15	7	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	129286352	129286352	G	A	SNP	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	missense	c.4069	p.R1357C	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	41	0	0	41	13	24.07	-	-	-	A	129286352	G	A	129286352	3	1	854	1	0	0	0	0	1	0	0	0	12201	1116	39	1	1768	1	PLXND1	3	129286352	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	15762030	129286352	68736078	36	70700										
ATP13A3	0	genome.wustl.edu	37	chr3	194151723	194151723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tcttctgatcaggtgccataCgggcaaacacggtgccatgc	11	12	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	194151723	194151723	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.2573	p.R858H	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	86	0	0	21	5	19.23	-	-	-	T	194151723	C	T	194151723	3	4	854	1	0	0	0	0	1	0	0	0	1129	536	19	1	1147	1	ATP13A3	3	194151723	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	64865371	194151723	3870707	37	70701										
LETM1	0	genome.wustl.edu	37	chr4	1834627	1834627	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tcatcctcaaataatttggaAaaacgcatgatttcctcatt	4	9	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	1834627	1834627	A	G	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	silent	c.924	p.F308	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	61	0	0	31	11	26.19	-	-	-	G	1834627	A	G	1834627	2	3	854	1	0	0	0	0	0	0	0	1	8788	11	1	5		5	LETM1	4	1834627	Silent	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09		1834627	189319649	38	70702										
KIAA0232	0	genome.wustl.edu	37	chr4	6863768	6863768	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tttgaggcagaatgttgcatAgtgttagatggtatggagtt	14	2	0	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	6863768	6863768	A	T	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	silent	c.1659	p.I553	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	177	0	0	55	12	17.91	-	-	-	T	6863768	A	T	6863768	2	4	854	1	0	0	0	0	0	0	0	1	8215	410	15	5		5	KIAA0232	4	6863768	Silent	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	5029141	6863768	184290508	39	70703										
GNPDA2	0	genome.wustl.edu	37	chr4	44709931	44709931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgccttgtgtgcccctgttaTaaggatcattacctgaaaaa	8	9	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	44709931	44709931	T	C	SNP	GNPDA2	ENST00000295448	human	ensembl	69_37n	-1	known	missense	c.607	p.I203V	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281	98	0	0	32	15	31.91	-	-	-	C	44709931	T	C	44709931	3	2	854	1	0	0	0	0	1	0	0	0	6595	1406	49	5	231	5	GNPDA2	4	44709931	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	37846163	44709931	146444345	40	70704										
GABRA2	0	genome.wustl.edu	37	chr4	46264108	46264108	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gggagagaattccgagcactGatgcttagagttgtcattgt	13	6	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	46264108	46264108	G	C	SNP	GABRA2	ENST00000540012	human	ensembl	69_37n	-1	known	missense	c.729	p.I243M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834	117	0	0	35	7	16.67	-	-	-	C	46264108	G	C	46264108	3	2	854	1	0	0	0	0	1	0	0	0	6210	1280	45	2	469	2	GABRA2	4	46264108	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	1554177	46264108	144890168	41	70705										
ADAMTS3	0	genome.wustl.edu	37	chr4	73414439	73414439	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcagatgaaaatcttttccaAatgccgtgatgttaaagaac	8	7	1	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	73414439	73414439	A	T	SNP	ADAMTS3	ENST00000286657	human	ensembl	69_37n	-1	known	missense	c.260	p.F87Y	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	159	0	0	40	11	21.57	-	-	-	T	73414439	A	T	73414439	3	4	854	1	0	0	0	0	1	0	0	0	267	14	1	5	3437	5	ADAMTS3	4	73414439	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	27150331	73414439	117739837	42	70706										
PALLD	0	genome.wustl.edu	37	chr4	169632939	169632939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	caatgctgctgagagggaaaCgaacggagtccatcccagcc	12	12	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	169632939	169632939	C	T	SNP	PALLD	ENST00000261509	human	ensembl	69_37n	1	known	missense	c.1829	p.T610M	0.020	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PALLD	HGNC	ENSG00000129116	100	0	0	24	9	27.27	-	-	-	T	169632939	C	T	169632939	3	4	854	1	0	0	0	0	1	0	0	0	11480	536	19	1	1863	1	PALLD	4	169632939	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	96218500	169632939	21521337	43	70707										
TLR3	0	genome.wustl.edu	37	chr4	187004105	187004105	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	caagaataaaatctcaaaaaTagagagtgatgctttctctt	6	6	2	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	187004105	187004105	T	C	SNP	TLR3	ENST00000296795	human	ensembl	69_37n	1	known	missense	c.1265	p.I422T	0.126	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	90	0	0	15	5	25	-	-	-	C	187004105	T	C	187004105	3	2	854	1	0	0	0	0	1	0	0	0	16047	1406	49	5	1275	5	TLR3	4	187004105	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	17371166	187004105	4150171	44	70708										
CDH9	0	genome.wustl.edu	37	chr5	26890044	26890044	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	attctgatgaagacagggatGtggctactttgttttgggtt	13	4	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	26890044	26890044	G	A	SNP	CDH9	ENST00000231021	human	ensembl	69_37n	-1	known	silent	c.1413	p.H471	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	282	0	0	64	10	13.51	-	-	-	A	26890044	G	A	26890044	2	1	854	1	0	0	0	0	0	0	0	1	3146	1368	48	4		4	CDH9	5	26890044	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		26890044	154025216	45	70709										
ZNF354A	0	genome.wustl.edu	37	chr5	178154017	178154017	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tacccagtgagaccaggttcCtatagttctccagcatcaca	7	13	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	178154017	178154017	C	G	SNP	ZNF354A	ENST00000335815	human	ensembl	69_37n	-1	known	missense	c.143	p.R48T	0.002	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131	195	0	0	94	16	14.55	-	-	-	G	178154017	C	G	178154017	3	3	854	1	0	0	0	0	1	0	0	0	17960	681	24	4	1686	4	ZNF354A	5	178154017	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	151263973	178154017	2761243	46	70710										
HIST1H4L	0	genome.wustl.edu	37	chr6	27841034	27841034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttgagcgcgtaaaccacgtcCatggctgtgactgtcttgcg	12	11	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	27841034	27841034	C	T	SNP	HIST1H4L	ENST00000355981	human	ensembl	69_37n	-1	known	missense	c.255	p.M85I	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4L	HGNC	ENSG00000198558	91	0	0	25	12	32.43	-	-	-	T	27841034	C	T	27841034	3	4	854	1	0	0	0	0	1	0	0	0	7227	594	21	4	60	4	HIST1H4L	6	27841034	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09		27841034	143274033	47	70711										
ELOVL5	0	genome.wustl.edu	37	chr6	53140987	53140987	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gagacagtaccttcatatctGattctcctgcggtgcgtgtg	11	10	3	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	53140987	53140987	G	C	SNP	ELOVL5	ENST00000541407	human	ensembl	69_37n	-1	known	nonsense	c.395	p.S132*	0.997	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660	138	0	0	38	17	30.91	-	-	-	C	53140987	G	C	53140987	4	2	854	1	0	0	0	0	0	1	0	0	5114	1294	45	2	605	2	ELOVL5	6	53140987	Nonsense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	25299953	53140987	117974080	48	70712										
PHIP	0	genome.wustl.edu	37	chr6	79725444	79725444	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tattgtcatgtcgatcccaaGctaccatagtaaccttcatt	5	11	2	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	79725444	79725444	G	T	SNP	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	missense	c.1292	p.A431D	1.000	superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	194	0	0	59	8	11.94	-	-	-	T	79725444	G	T	79725444	3	4	854	1	0	0	0	0	1	0	0	0	11916	971	34	4	4281	4	PHIP	6	79725444	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	26584457	79725444	91389623	49	70713										
GRIK2	0	genome.wustl.edu	37	chr6	102483396	102483396	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	actgtaacctgacacagattGgcggccttatagactctaaa	8	10	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	102483396	102483396	G	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	1	known	missense	c.2266	p.G756R	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	61	0	0	41	7	14.58	-	-	-	C	102483396	G	C	102483396	3	2	854	1	0	0	0	0	1	0	0	0	6825	1348	47	4	2320	4	GRIK2	6	102483396	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	22757952	102483396	68631671	50	70714										
TCP1	0	genome.wustl.edu	37	chr6	160200683	160200683	+	Frame_Shift_Del	DEL	T	T	-													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttagatttttacgttctgggTtaacctgggcctcattatga							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	160200683	160200683	T	-	DEL	TCP1	ENST00000321394	human	ensembl	69_37n	-1	known	frame_shift_del	c.1430	p.N477fs	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_alpha	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_alpha	-	no_errors	TCP1	HGNC	ENSG00000120438	83	0	0	32	8	20	-	-	-	-	160200683	T	-	160200683	7	5	854	1	0	1	0	1	0	0	0	0	15804	1725	60	0	248	0	TCP1	6	160200683	Frame_Shift_Del	DEL	T	TCGA-E9-A1RF-01A-11D-A159-09	57717287	160200683	10914384	51	70715										
PDE10A	0	genome.wustl.edu	37	chr6	165792776	165792776	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ataaagcaaggtctgtggcaAtgatggctttgcggatgatc	13	6	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	165792776	165792776	A	G	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.1892	p.I631T	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	210	0	0	29	33	53.23	-	-	-	G	165792776	A	G	165792776	3	3	854	1	0	0	0	0	1	0	0	0	11703	101	4	5	497	5	PDE10A	6	165792776	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	5592093	165792776	5322291	52	70716										
SAMD9	0	genome.wustl.edu	37	chr7	92731415	92731415	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aaagctactaggtttctcctGcatctctctacttgaagtgg	8	10	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	92731415	92731415	G	C	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.3996	p.C1332W	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	122	0	0	31	11	26.19	-	-	-	C	92731415	G	C	92731415	3	2	854	1	0	0	0	0	1	0	0	0	13912	1311	46	4	777	4	SAMD9	7	92731415	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		92731415	66407248	53	70717										
SMURF1	0	genome.wustl.edu	37	chr7	98638117	98638117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtgaagcccccgttgatgtaGtgtccatggaacacagccag	12	11	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	98638117	98638117	G	T	SNP	SMURF1	ENST00000361125	human	ensembl	69_37n	-1	known	missense	c.1512	p.H504Q	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF1	HGNC	ENSG00000198742	71	0	0	36	4	10	-	-	-	T	98638117	G	T	98638117	3	4	854	1	0	0	0	0	1	0	0	0	14908	1020	36	4	785	4	SMURF1	7	98638117	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	5906702	98638117	60500546	54	70718										
DGKI	0	genome.wustl.edu	37	chr7	137293718	137293718	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gaaaaattactcacctggttGcctccactcttgggattcac	7	12	3	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	137293718	137293718	G	C	SNP	DGKI	ENST00000424189	human	ensembl	69_37n	-1	known	silent	c.1161	p.G387	0.999	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	182	0	0	81	17	17.35	-	-	-	C	137293718	G	C	137293718	2	2	854	1	0	0	0	0	0	0	0	1	4507	1306	46	4		4	DGKI	7	137293718	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	38655601	137293718	21844945	55	70719										
TMEM64	0	genome.wustl.edu	37	chr8	91638033	91638033	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	acaagctacaatagctgcatTcaattccacttgagctcgat	6	11	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	8	91638033	91638033	T	A	SNP	TMEM64	ENST00000458549	human	ensembl	69_37n	-1	known	missense	c.1009	p.N337Y	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM64	HGNC	ENSG00000180694	153	0	0	48	12	20	-	-	-	A	91638033	T	A	91638033	3	1	854	1	0	0	0	0	1	0	0	0	16288	1783	62	5	137	5	TMEM64	8	91638033	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09		91638033	54725989	56	70720										
ADCY8	0	genome.wustl.edu	37	chr8	131916201	131916201	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tcgatattatgcttcctcagGaattcattcctctctttacc	4	12	3	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	8	131916201	131916201	G	C	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.1728	p.F576L	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	88	0	0	25	5	16.67	-	-	-	C	131916201	G	C	131916201	3	2	854	1	0	0	0	0	1	0	0	0	300	1165	41	2	2075	2	ADCY8	8	131916201	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	40278168	131916201	14447821	57	70721										
IFNA2	0	genome.wustl.edu	37	chr9	21385064	21385064	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgagtcctttgtgctgaagaGattgaagatctgctggatca	12	6	2	5			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	21385064	21385064	G	T	SNP	IFNA2	ENST00000380206	human	ensembl	69_37n	-1	known	missense	c.265	p.L89I	0.404	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA2	HGNC	ENSG00000188379	179	0	0	37	12	24.49	-	-	-	T	21385064	G	T	21385064	3	4	854	1	0	0	0	0	1	0	0	0	7591	942	33	2	305	2	IFNA2	9	21385064	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		21385064	119828367	58	70722										
FAM75A6	0	genome.wustl.edu	37	chr9	43630592	43630592	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggagtaataggaagaagaacCccagggcaaacaccaaggtg	13	8	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	43630592	43630592	C	A	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.110	p.G37V	0.303	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	144	0	0	36	16	30.19	-	-	-	A	43630592	C	A	43630592	3	1	854	1	0	0	0	0	1	0	0	0	5667	623	22	4	3937	4	FAM75A6	9	43630592	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	22245528	43630592	97582839	59	70723										
TRPM3	0	genome.wustl.edu	37	chr9	73458041	73458041	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	atcgccaacatgacgaataaCacctaaaaaaaaaagagaag	6	8	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	73458041	73458041	C	A	SNP	TRPM3	ENST00000423814	human	ensembl	69_37n	-1	known	missense	c.685	p.V229F	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	69	0	0	20	5	20	-	-	-	A	73458041	C	A	73458041	3	1	854	1	0	0	0	0	1	0	0	0	16683	478	17	4	4651	4	TRPM3	9	73458041	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	29827449	73458041	67755390	60	70724										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123201828	123201828	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cctgctgtcaatcatctctgGggccagcggaccgaggattt	12	12	3	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	123201828	123201828	G	C	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.3571	p.P1191A	0.465	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	157	0	0	53	9	14.52	-	-	-	C	123201828	G	C	123201828	3	2	854	1	0	0	0	0	1	0	0	0	3175	1232	43	4	2170	4	CDK5RAP2	9	123201828	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	49743787	123201828	18011603	61	70725										
GARNL3	0	genome.wustl.edu	37	chr9	130095401	130095401	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tggcggtctggataccaaaaGtaagcctgcctcttgatcta	10	10	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	130095401	130095401	G	C	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	splice_site	c.769+1	e9+1	1.000	-	-	-	no_errors	GARNL3	HGNC	ENSG00000136895	106	1	0.93	27	8	22.86	-	-	-	C	130095401	G	C	130095401	5	2	854	1	0	0	0	0	0	0	1	0	6291	1043	36	4	804	4	GARNL3	9	130095401	Splice_Site	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	6893573	130095401	11118030	62	70726										
GATA3	0	genome.wustl.edu	37	chr10	8111471	8111472	+	Frame_Shift_Ins	INS	-	-	T													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cagggacgtcctgtgcgaacINStgtcagaccaccacaaccac							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	10	8111471	8111472	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.960_961	p.C320fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	110	0	0	28	20	41.67	-	-	-	T	8111472	-	T	8111471	7	5	854	1	0	1	1	0	0	0	0	0	6305	564	20	0	974	0	GATA3	10	8111471	Frame_Shift_Ins	INS	-	TCGA-E9-A1RF-01A-11D-A159-09		8111471	127423276	63	70727										
VAX1	0	genome.wustl.edu	37	chr10	118891744	118891744	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aggggctgccaccctctgccCccggagtccccacgccgaga	12	19	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	10	118891744	118891744	C	G	SNP	VAX1	ENST00000277905	human	ensembl	69_37n	-1	known	silent	c.537	p.G179	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	VAX1	HGNC	ENSG00000148704	66	0	0	27	7	20.59	-	-	-	G	118891744	C	G	118891744	2	3	854	1	0	0	0	0	0	0	0	1	17231	610	22	4		4	VAX1	10	118891744	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	110780273	118891744	16643003	64	70728										
NUP160	0	genome.wustl.edu	37	chr11	47869781	47869781	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	atttccgtaccaatgctgcaGactgtgaattcccgaaagtg	9	10	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	47869781	47869781	G	C	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	silent	c.192	p.V64	0.103	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	23	0	0	11	6	35.29	-	-	-	C	47869781	G	C	47869781	2	2	854	1	0	0	0	0	0	0	0	1	10830	929	33	2		2	NUP160	11	47869781	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		47869781	87136735	65	70729										
PGA5	0	genome.wustl.edu	37	chr11	61017398	61017398	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctctttccagatggtggtcaGctgctcagccatcagcagcc	10	14	4	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	61017398	61017398	G	C	SNP	PGA5	ENST00000312403	human	ensembl	69_37n	1	known	missense	c.929	p.S310T	0.765	pfam_Peptidase_A1,superfamily_Peptidase_aspartic	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA5	HGNC	ENSG00000256713	183	1	0.54	83	22	20.95	-	-	-	C	61017398	G	C	61017398	3	2	854	1	0	0	0	0	1	0	0	0	11846	971	34	4	959	4	PGA5	11	61017398	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	13147617	61017398	73989118	66	70730										
SLC6A13	0	genome.wustl.edu	37	chr12	368960	368960	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gaggggccgtaagtgcaggaGatggaagtatcctccttcca	14	9	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	368960	368960	G	A	SNP	SLC6A13	ENST00000436453	human	ensembl	69_37n	-1	putative	missense	c.259	p.L87F	0.043	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	-	no_errors	SLC6A13	HGNC	ENSG00000010379	62	0	0	18	5	21.74	-	-	-	A	368960	G	A	368960	3	1	854	1	0	0	0	0	1	0	0	0	14765	957	33	2		2	SLC6A13	12	368960	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		368960	133482935	67	70731										
LRTM2	0	genome.wustl.edu	37	chr12	1940299	1940299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cctgccaagctgggctttcgCcaacctctccagcctgcagc	9	18	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	1940299	1940299	C	A	SNP	LRTM2	ENST00000299194	human	ensembl	69_37n	1	known	missense	c.266	p.A89D	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159	25	0	0	14	5	26.32	-	-	-	A	1940299	C	A	1940299	3	1	854	1	0	0	0	0	1	0	0	0	9111	739	26	4	272	4	LRTM2	12	1940299	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	1571339	1940299	131911596	68	70732										
RBP5	0	genome.wustl.edu	37	chr12	7280866	7280866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cgtccgtccacgctcctgagGtcctcctcaaactccactcc	6	20	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	7280866	7280866	G	A	SNP	RBP5	ENST00000266560	human	ensembl	69_37n	-1	known	silent	c.222	p.D74	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP5	HGNC	ENSG00000139194	133	0	0	55	8	12.5	-	-	-	A	7280866	G	A	7280866	2	1	854	1	0	0	0	0	0	0	0	1	13242	1252	44	4		4	RBP5	12	7280866	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	5340567	7280866	126571029	69	70733										
IRAK4	0	genome.wustl.edu	37	chr12	44176271	44176271	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tggagaaataacacccaaatCtgatatttacagctttggtg	8	7	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	44176271	44176271	C	A	SNP	IRAK4	ENST00000448290	human	ensembl	69_37n	1	known	missense	c.1103	p.S368Y	1.000	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Interleukin-1_rcpt-assoc_kin4,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001	80	0	0	26	13	33.33	-	-	-	A	44176271	C	A	44176271	3	1	854	1	0	0	0	0	1	0	0	0	7879	913	32	2	1133	2	IRAK4	12	44176271	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	36895405	44176271	89675624	70	70734										
IKZF4	0	genome.wustl.edu	37	chr12	56418866	56418866	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gactcatctctggagaaggaGttcctcggggccccagtggg	15	11	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	56418866	56418866	G	T	SNP	IKZF4	ENST00000262032	human	ensembl	69_37n	1	known	missense	c.210	p.E70D	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411	30	0	0	16	4	20	-	-	-	T	56418866	G	T	56418866	3	4	854	1	0	0	0	0	1	0	0	0	7671	1020	36	4	220	4	IKZF4	12	56418866	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	12242595	56418866	77433029	71	70735										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100444935	100444935	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtttcaccataattctgtagGtttgcaccagcattcacact	6	11	3	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	100444935	100444935	G	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.3489	p.N1163K	0.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	201	0	0	85	19	18.27	-	-	-	C	100444935	G	C	100444935	3	2	854	1	0	0	0	0	1	0	0	0	17066	1252	44	4	929	4	UHRF1BP1L	12	100444935	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	44026069	100444935	33406960	72	70736										
ANAPC7	0	genome.wustl.edu	37	chr12	110815309	110815309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cactgggtcttcaagacaaaCggtggctaaaagggtaaggg	14	7	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	110815309	110815309	C	T	SNP	ANAPC7	ENST00000455511	human	ensembl	69_37n	-1	known	missense	c.1348	p.V450I	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510	317	0	0	84	41	32.8	-	-	-	T	110815309	C	T	110815309	3	4	854	1	0	0	0	0	1	0	0	0	606	536	19	1	467	1	ANAPC7	12	110815309	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	10370374	110815309	23036586	73	70737										
HPD	0	genome.wustl.edu	37	chr12	122277893	122277893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcgtgggccggtcctgcaccGgtttggtgaagatctgcagg	17	10	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	122277893	122277893	G	A	SNP	HPD	ENST00000289004	human	ensembl	69_37n	-1	known	missense	c.1016	p.P339L	1.000	pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104	72	0	0	38	9	19.15	-	-	-	A	122277893	G	A	122277893	3	1	854	1	0	0	0	0	1	0	0	0	7383	1116	39	1	173	1	HPD	12	122277893	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	11462584	122277893	11574002	74	70738										
TMEM132D	0	genome.wustl.edu	37	chr12	129558828	129558828	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtccggttgcttaacccaacCcagtcatgagagtgactcat	9	12	2	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	129558828	129558828	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2892	p.W964C	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	81	0	0	31	8	20.51	-	-	-	A	129558828	C	A	129558828	3	1	854	1	0	0	0	0	1	0	0	0	16142	624	22	4	411	4	TMEM132D	12	129558828	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	7280935	129558828	4293067	75	70739										
BIVM	0	genome.wustl.edu	37	chr13	103459852	103459852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	actatgcctttctcaaccagGcgacctcaatctataaaact	4	13	3	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	13	103459852	103459852	G	T	SNP	BIVM	ENST00000257336	human	ensembl	69_37n	1	known	missense	c.235	p.A79S	1.000	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897	116	0	0	51	11	17.74	-	-	-	T	103459852	G	T	103459852	3	4	854	1	0	0	0	0	1	0	0	0	1446	1203	42	4	237	4	BIVM	13	103459852	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		103459852	11710026	76	70740										
ABHD13	0	genome.wustl.edu	37	chr13	108882099	108882099	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgtgttagactacgtgatgaCtagacctgaccttgataaaa	9	7	0	6			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	13	108882099	108882099	C	G	SNP	ABHD13	ENST00000375898	human	ensembl	69_37n	1	known	missense	c.533	p.T178S	1.000	pfam_AB_hydrolase_1,pfam_AXE1	pfam_AB_hydrolase_1,pfam_AXE1	-	no_errors	ABHD13	HGNC	ENSG00000139826	110	0	0	33	6	15.38	-	-	-	G	108882099	C	G	108882099	3	3	854	1	0	0	0	0	1	0	0	0	78	565	20	4	535	4	ABHD13	13	108882099	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	5422247	108882099	6287779	77	70741										
C14orf39	0	genome.wustl.edu	37	chr14	60908795	60908795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aacttcaaacaacttaccaaTctcttgctctgatgacagag	5	11	3	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	60908795	60908795	T	G	SNP	C14orf39	ENST00000321731	human	ensembl	69_37n	-1	known	missense	c.1558	p.I520L	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	142	0	0	35	9	20.45	-	-	-	G	60908795	T	G	60908795	3	3	854	1	0	0	0	0	1	0	0	0	1784	1435	50	5	213	5	C14orf39	14	60908795	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09		60908795	46440745	78	70742										
AHSA1	0	genome.wustl.edu	37	chr14	77929072	77929072	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgaaacttctaagagaagcaAtgggaatttacatcagcacc	8	8	2	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	77929072	77929072	A	G	SNP	AHSA1	ENST00000216479	human	ensembl	69_37n	1	known	missense	c.442	p.M148V	0.465	pfam_AHSA1_N,superfamily_AHSA1_N	pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N	-	no_errors	AHSA1	HGNC	ENSG00000100591	93	0	0	27	11	28.95	-	-	-	G	77929072	A	G	77929072	3	3	854	1	0	0	0	0	1	0	0	0	418	101	4	5	456	5	AHSA1	14	77929072	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	17020277	77929072	29420468	79	70743										
CKB	0	genome.wustl.edu	37	chr14	103986486	103986486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tcgcttctgaagtcgcagccGcttaagcacctccgagaact	9	14	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	103986486	103986486	G	A	SNP	CKB	ENST00000348956	human	ensembl	69_37n	-1	known	missense	c.940	p.R314W	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKB	HGNC	ENSG00000166165	50	0	0	22	5	18.52	-	-	-	A	103986486	G	A	103986486	3	1	854	1	0	0	0	0	1	0	0	0	3476	1086	38	1	213	1	CKB	14	103986486	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	26057414	103986486	3363054	80	70744										
PIGB	0	genome.wustl.edu	37	chr15	55633010	55633010	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtgactgtgctgtggacactGcttgtttataggtaagattt	12	5	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	15	55633010	55633010	G	C	SNP	PIGB	ENST00000164305	human	ensembl	69_37n	1	known	silent	c.1047	p.L349	0.499	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943	99	0	0	17	9	34.62	-	-	-	C	55633010	G	C	55633010	2	2	854	1	0	0	0	0	0	0	0	1	11959	1306	46	4		4	PIGB	15	55633010	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		55633010	46898382	81	70745										
WDR24	0	genome.wustl.edu	37	chr16	735108	735109	+	Frame_Shift_Ins	INS	-	-	A													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggctggtgctcagcttgaccINSacctcgttggacacgttcca							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	735108	735109	-	A	INS	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2478_2477	p.V827fs	1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	24	0	0	16	4	20	-	-	-	A	735109	-	A	735108	7	5	854	1	0	1	1	0	0	0	0	0	17378	581	21	0	292	0	WDR24	16	735108	Frame_Shift_Ins	INS	-	TCGA-E9-A1RF-01A-11D-A159-09		735108	89619645	82	70746										
TMEM186	0	genome.wustl.edu	37	chr16	8890208	8890208	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggtggcaaagctaccactgtCagggcagtctgtgccaactt	12	11	2	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	8890208	8890208	C	T	SNP	TMEM186	ENST00000333050	human	ensembl	69_37n	-1	known	silent	c.243	p.L81	0.965	NULL	NULL	-	no_errors	TMEM186	HGNC	ENSG00000184857	112	0	0	26	8	23.53	-	-	-	T	8890208	C	T	8890208	2	4	854	1	0	0	0	0	0	0	0	1	16203	813	29	2		2	TMEM186	16	8890208	Silent	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	8155100	8890208	81464545	83	70747										
C16orf45	0	genome.wustl.edu	37	chr16	15677024	15677024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctttcacagggagcaagaagAagacaaggaaatggctgatt	12	6	1	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	15677024	15677024	A	C	SNP	C16orf45	ENST00000300006	human	ensembl	69_37n	1	known	missense	c.431	p.E144A	1.000	pfam_DUF3585	pfam_DUF3585	-	no_errors	C16orf45	HGNC	ENSG00000166780	97	0	0	36	15	29.41	-	-	-	C	15677024	A	C	15677024	3	2	854	1	0	0	0	0	1	0	0	0	1827	246	9	5	508	5	C16orf45	16	15677024	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	6786816	15677024	74677729	84	70748										
PRKCB	0	genome.wustl.edu	37	chr16	24124299	24124299	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	cttgtctcccttcaggtttaAgttactgagccaggaggaag	11	9	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	24124299	24124299	A	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	1	known	missense	c.827	p.K276M	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	127	0	0	39	10	20.41	-	-	-	T	24124299	A	T	24124299	3	4	854	1	0	0	0	0	1	0	0	0	12589	72	3	5	857	5	PRKCB	16	24124299	Missense_Mutation	SNP	A	TCGA-E9-A1RF-01A-11D-A159-09	8447275	24124299	66230454	85	70749										
SRCAP	0	genome.wustl.edu	37	chr16	30745237	30745237	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttatcagtgaacggacagtgGaggagaacatcctaaaaaag	11	6	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	30745237	30745237	G	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	nonsense	c.6517	p.E2173*	1.000	pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	115	1	0.86	39	11	22	-	-	-	T	30745237	G	T	30745237	4	4	854	1	0	0	0	0	0	1	0	0	15226	1175	41	2	6627	2	SRCAP	16	30745237	Nonsense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	6620938	30745237	59609516	86	70750										
CDH8	0	genome.wustl.edu	37	chr16	61823301	61823301	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ccatacacttaattctctgtCaagtggtgttgccagcgtta	8	10	2	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	61823301	61823301	C	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	missense	c.1363	p.D455H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	218	0	0	88	11	11.11	-	-	-	G	61823301	C	G	61823301	3	3	854	1	0	0	0	0	1	0	0	0	3145	826	29	2	1056	2	CDH8	16	61823301	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	31078064	61823301	28531452	87	70751										
FUK	0	genome.wustl.edu	37	chr16	70512513	70512513	+	Frame_Shift_Del	DEL	G	G	-													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtgcagaatgcccacagcctGgtacggcaaactgaggagtg							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	70512513	70512513	G	-	DEL	FUK	ENST00000378912	human	ensembl	69_37n	1	known	frame_shift_del	c.2907	p.V970fs	1.000	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	46	0	0	10	3	23.08	-	-	-	-	70512513	G	-	70512513	7	5	854	1	0	1	0	1	0	0	0	0	6145	1335	47	0	2971	0	FUK	16	70512513	Frame_Shift_Del	DEL	G	TCGA-E9-A1RF-01A-11D-A159-09	8689212	70512513	19842240	88	70752										
BCAR1	0	genome.wustl.edu	37	chr16	75267782	75267782	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gctcttgccctgccgcgtgaTgctgcccttttccagcagct	10	16	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	75267782	75267782	T	C	SNP	BCAR1	ENST00000418647	human	ensembl	69_37n	-1	known	missense	c.2200	p.I734V	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	48	0	0	24	10	29.41	-	-	-	C	75267782	T	C	75267782	3	2	854	1	0	0	0	0	1	0	0	0	1352	1464	51	5	558	5	BCAR1	16	75267782	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	4755269	75267782	15086971	89	70753										
CTU2	0	genome.wustl.edu	37	chr16	88781476	88781476	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ccctcactggaccccctgccGccgtacatcctggctgaggc	10	19	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	88781476	88781476	G	A	SNP	CTU2	ENST00000567949	human	ensembl	69_37n	1	known	silent	c.1653	p.P551	0.030	NULL	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177	53	0	0	25	16	39.02	-	-	-	A	88781476	G	A	88781476	2	1	854	1	0	0	0	0	0	0	0	1	4079	1074	38	1		1	CTU2	16	88781476	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	13513694	88781476	1573277	90	70754										
MYH8	0	genome.wustl.edu	37	chr17	10318692	10318692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggcgctgatgatttgatcttCcagagtcccctgcaaaggaa	11	10	1	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	10318692	10318692	C	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.658	p.E220Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	201	1	0.5	24	18	42.86	-	-	-	G	10318692	C	G	10318692	3	3	854	1	0	0	0	0	1	0	0	0	10113	864	30	2	5287	2	MYH8	17	10318692	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09		10318692	70876518	91	70755										
NCOR1	0	genome.wustl.edu	37	chr17	15989636	15989636	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttataaaagatggtttttctGaagccactgtggttttggat	10	4	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	15989636	15989636	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.3137	p.S1046*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	135	1	0.74	32	32	49.23	-	-	-	T	15989636	G	T	15989636	4	4	854	1	0	0	0	0	0	1	0	0	10307	1294	45	2	4281	2	NCOR1	17	15989636	Nonsense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	5670944	15989636	65205574	92	70756										
KLHL10	0	genome.wustl.edu	37	chr17	40004264	40004264	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	taacacttggcgcacaatccCcactatgtttaatcctcgta	5	13	0	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	40004264	40004264	C	G	SNP	KLHL10	ENST00000293303	human	ensembl	69_37n	1	known	missense	c.1532	p.P511R	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL10	HGNC	ENSG00000161594	137	0	0	45	6	11.76	-	-	-	G	40004264	C	G	40004264	3	3	854	1	0	0	0	0	1	0	0	0	8419	623	22	4	1550	4	KLHL10	17	40004264	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	24014628	40004264	41190946	93	70757										
FAM117A	0	genome.wustl.edu	37	chr17	47793671	47793671	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gaaaggctgggtgtcctggaGaggaggctgtgaacagagca	18	6	0	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	47793671	47793671	G	A	SNP	FAM117A	ENST00000240364	human	ensembl	69_37n	-1	known	missense	c.917	p.S306F	1.000	NULL	NULL	-	no_errors	FAM117A	HGNC	ENSG00000121104	83	0	0	112	46	29.11	-	-	-	A	47793671	G	A	47793671	3	1	854	1	0	0	0	0	1	0	0	0	5449	942	33	2	452	2	FAM117A	17	47793671	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	7789407	47793671	33401539	94	70758										
LPIN2	0	genome.wustl.edu	37	chr18	2937960	2937960	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gttgtcctcactgggaattaCccgaaaatgagtattttctg	9	8	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	18	2937960	2937960	C	G	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	missense	c.898	p.V300L	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	153	0	0	36	23	38.98	-	-	-	G	2937960	C	G	2937960	3	3	854	1	0	0	0	0	1	0	0	0	8985	507	18	4	1848	4	LPIN2	18	2937960	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09		2937960	75139288	95	70759										
CDH7	0	genome.wustl.edu	37	chr18	63491905	63491905	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tatcaatataacgtcccagaGtcattacctgtagcctcagt	6	11	3	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	18	63491905	63491905	G	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	silent	c.819	p.E273	0.929	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	188	0	0	47	13	21.67	-	-	-	A	63491905	G	A	63491905	2	1	854	1	0	0	0	0	0	0	0	1	3144	1020	36	4		4	CDH7	18	63491905	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	60553945	63491905	14585343	96	70760										
PIAS4	0	genome.wustl.edu	37	chr19	4028738	4028738	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggctactacccctccaataaGcccggggtggagcccaagag	12	14	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	4028738	4028738	G	C	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	1	known	missense	c.693	p.K231N	1.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	26	0	0	18	4	18.18	-	-	-	C	4028738	G	C	4028738	3	2	854	1	0	0	0	0	1	0	0	0	11952	962	34	4	715	4	PIAS4	19	4028738	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		4028738	55100245	97	70761										
ELAVL1	0	genome.wustl.edu	37	chr19	8032481	8032481	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcctggtggtgaacggggccTccgaaccgtcgcgctggcga	17	13	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	8032481	8032481	T	G	SNP	ELAVL1	ENST00000351593	human	ensembl	69_37n	-1	known	silent	c.705	p.G235	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	84	0	0	40	11	21.57	-	-	-	G	8032481	T	G	8032481	2	3	854	1	0	0	0	0	0	0	0	1	5086	1538	54	5		5	ELAVL1	19	8032481	Silent	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	4003743	8032481	51096502	98	70762										
ISYNA1	0	genome.wustl.edu	37	chr19	18545910	18545910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggagcatgtggttctgtggcGggagccccacgcaggccctg	17	12	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	18545910	18545910	G	A	SNP	ISYNA1	ENST00000338128	human	ensembl	69_37n	-1	known	missense	c.1490	p.P497L	0.996	pirsf_Myo-inos-1-P_Synthase	pfam_Myo-inos-1-P_Synthase,pfam_Myo-inos-1-P_Synthase_GAPDH,pirsf_Myo-inos-1-P_Synthase	-	no_errors	ISYNA1	HGNC	ENSG00000105655	32	0	0	21	5	19.23	-	-	-	A	18545910	G	A	18545910	3	1	854	1	0	0	0	0	1	0	0	0	7921	1116	39	1	190	1	ISYNA1	19	18545910	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	10513429	18545910	40583073	99	70763										
COMP	0	genome.wustl.edu	37	chr19	18899673	18899673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgttgatgcacacggagttgGggacgcagttatgttgcccg	15	8	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	18899673	18899673	G	A	SNP	COMP	ENST00000222271	human	ensembl	69_37n	-1	known	missense	c.578	p.P193L	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	34	0	0	18	6	25	-	-	-	A	18899673	G	A	18899673	3	1	854	1	0	0	0	0	1	0	0	0	3754	1232	43	4	1751	4	COMP	19	18899673	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	353763	18899673	40229310	100	70764										
NUMBL	0	genome.wustl.edu	37	chr19	41175875	41175875	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgaactgatctgtgtgcacaGagcgttgatgctgtcactgt	12	8	2	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	41175875	41175875	G	C	SNP	NUMBL	ENST00000252891	human	ensembl	69_37n	-1	known	missense	c.1087	p.L363V	0.954	pfam_Numb_domain,pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	43	0	0	10	4	28.57	-	-	-	C	41175875	G	C	41175875	3	2	854	1	0	0	0	0	1	0	0	0	10825	933	33	2	750	2	NUMBL	19	41175875	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	22276202	41175875	17953108	101	70765										
ZNF417	0	genome.wustl.edu	37	chr19	58420121	58420121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	agaatgaactcttttatgaaCatgaagcgcagagctggaaa	10	6	1	5			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	58420121	58420121	C	G	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.1525	p.V509L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	188	0	0	69	11	13.75	-	-	-	G	58420121	C	G	58420121	3	3	854	1	0	0	0	0	1	0	0	0	17990	478	17	4	206	4	ZNF417	19	58420121	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	17244246	58420121	708862	102	70766										
ZNF606	0	genome.wustl.edu	37	chr19	58489955	58489955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctccagtatgagttctccggTgtgcaatgaggtgagaacta	12	8	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	58489955	58489955	T	G	SNP	ZNF606	ENST00000341164	human	ensembl	69_37n	-1	known	missense	c.2093	p.H698P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704	160	0	0	70	13	15.66	-	-	-	G	58489955	T	G	58489955	3	3	854	1	0	0	0	0	1	0	0	0	18128	1696	59	5	289	5	ZNF606	19	58489955	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09	69834	58489955	639028	103	70767										
KIF16B	0	genome.wustl.edu	37	chr20	16354954	16354954	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ttcagcactgactggcaagcTggaagaagccaccttccctt	9	13	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	16354954	16354954	T	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.3298	p.S1100G	0.001	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	98	0	0	53	14	20.9	-	-	-	C	16354954	T	C	16354954	3	2	854	1	0	0	0	0	1	0	0	0	8330	1580	55	5	683	5	KIF16B	20	16354954	Missense_Mutation	SNP	T	TCGA-E9-A1RF-01A-11D-A159-09		16354954	46670566	104	70768										
AHCY	0	genome.wustl.edu	37	chr20	32873245	32873245	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gaggtagaagaataaacccaCcttcttgggcaggaaatgaa	11	7	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	32873245	32873245	C	A	SNP	AHCY	ENST00000217426	human	ensembl	69_37n	-1	known	splice_site	c.1167+1	e9+1	1.000	-	-	-	no_errors	AHCY	HGNC	ENSG00000101444	69	0	0	31	9	22.5	-	-	-	A	32873245	C	A	32873245	5	1	854	1	0	0	0	0	0	0	1	0	409	521	18	4	138	4	AHCY	20	32873245	Splice_Site	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	16518291	32873245	30152275	105	70769										
SEMG2	0	genome.wustl.edu	37	chr20	43851891	43851891	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcaaacaagacctactcagtCatgaacaaaaaggcagatac	7	10	2	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	43851891	43851891	C	G	SNP	SEMG2	ENST00000372769	human	ensembl	69_37n	1	known	missense	c.1618	p.H540D	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	85	0	0	46	8	14.81	-	-	-	G	43851891	C	G	43851891	3	3	854	1	0	0	0	0	1	0	0	0	14133	826	29	2	1624	2	SEMG2	20	43851891	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	10978646	43851891	19173629	106	70770										
SALL4	0	genome.wustl.edu	37	chr20	50405579	50405579	+	Frame_Shift_Del	DEL	T	T	-													0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggctgctaacaaaggggtcaTccctggggacaatgtcgagg							TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	50405579	50405579	T	-	DEL	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	frame_shift_del	c.2563	p.M855fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	54	0	0	32	9	21.95	-	-	-	-	50405579	T	-	50405579	7	5	854	1	0	1	0	1	0	0	0	0	13899	1435	50	0	606	0	SALL4	20	50405579	Frame_Shift_Del	DEL	T	TCGA-E9-A1RF-01A-11D-A159-09	6553688	50405579	12619941	107	70771										
PRPF6	0	genome.wustl.edu	37	chr20	62626765	62626765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gccaggactgatgacacctgGcacaggtgagctggacatga	14	10	0	4			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	62626765	62626765	G	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.701	p.G234D	1.000	NULL	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	98	0	0	35	10	22.22	-	-	-	A	62626765	G	A	62626765	3	1	854	1	0	0	0	0	1	0	0	0	12655	1203	42	4	723	4	PRPF6	20	62626765	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	12221186	62626765	398755	108	70772										
LIPI	0	genome.wustl.edu	37	chr21	15554120	15554120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	catccacaaactttgcatccGtgtaatctaatctgctatat	4	11	2	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	15554120	15554120	G	T	SNP	LIPI	ENST00000344577	human	ensembl	69_37n	-1	known	missense	c.665	p.T222K	0.998	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPI	HGNC	ENSG00000188992	141	0	0	25	15	37.5	-	-	-	T	15554120	G	T	15554120	3	4	854	1	0	0	0	0	1	0	0	0	8881	1145	40	3	808	3	LIPI	21	15554120	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		15554120	32575775	109	70773										
DSCAM	0	genome.wustl.edu	37	chr21	41465724	41465724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gtaacagccaccacccagacGctgtactgacgattcctact	7	15	0	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	41465724	41465724	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	silent	c.3774	p.S1258	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	91	0	0	16	7	30.43	-	-	-	A	41465724	G	A	41465724	2	1	854	1	0	0	0	0	0	0	0	1	4803	1078	38	1		1	DSCAM	21	41465724	Silent	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	25911604	41465724	6664171	110	70774										
KRTAP10-5	0	genome.wustl.edu	37	chr21	45999699	45999699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggacacgcaggaggccgggcGgcagcagctggcctggtagg	20	11	0	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	45999699	45999699	G	A	SNP	KRTAP10-5	ENST00000400372	human	ensembl	69_37n	-1	known	missense	c.757	p.R253C	0.881	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	52	0	0	25	15	37.5	-	-	-	A	45999699	G	A	45999699	3	1	854	1	0	0	0	0	1	0	0	0	8565	1116	39	1	62	1	KRTAP10-5	21	45999699	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	4533975	45999699	2130196	111	70775										
GGT1	0	genome.wustl.edu	37	chr22	25023502	25023502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ctacaagcccgagttctacaCgccggatgacgggggcactg	13	13	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	25023502	25023502	C	T	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	1	known	missense	c.1124	p.T375M	0.252	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	79	0	0	31	11	26.19	-	-	-	T	25023502	C	T	25023502	3	4	854	1	0	0	0	0	1	0	0	0	6413	536	19	1	1154	1	GGT1	22	25023502	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09		25023502	26281064	112	70776										
RFPL2	0	genome.wustl.edu	37	chr22	32589028	32589028	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gagaccatggaagagcaacaGcaaagtagatcctccccatg	10	11	0	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	32589028	32589028	G	T	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	nonsense	c.417	p.C139*	0.002	pfam_RDM_domain_RFPL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	208	0	0	74	16	17.78	-	-	-	T	32589028	G	T	32589028	4	4	854	1	0	0	0	0	0	1	0	0	13337	963	34	4	727	4	RFPL2	22	32589028	Nonsense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	7565526	32589028	18715538	113	70777										
XPNPEP3	0	genome.wustl.edu	37	chr22	41253216	41253216	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	tgctctcagcccccaagctgGttcccgctgtagcaaacgtc	9	16	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	41253216	41253216	G	C	SNP	XPNPEP3	ENST00000357137	human	ensembl	69_37n	1	known	missense	c.31	p.V11L	0.997	NULL	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	60	0	0	21	5	19.23	-	-	-	C	41253216	G	C	41253216	3	2	854	1	0	0	0	0	1	0	0	0	17541	1261	44	4	33	4	XPNPEP3	22	41253216	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	8664188	41253216	10051350	114	70778										
NDUFA6	0	genome.wustl.edu	37	chr22	42483141	42483141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	catttctcggactttatcccGtcccattttcacagtgatgt	6	12	2	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	42483141	42483141	G	A	SNP	NDUFA6	ENST00000498737	human	ensembl	69_37n	-1	known	missense	c.256	p.R86W	0.999	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	NDUFA6	HGNC	ENSG00000184983	113	0	0	37	10	21.28	-	-	-	A	42483141	G	A	42483141	3	1	854	1	0	0	0	0	1	0	0	0	10341	1144	40	1	216	1	NDUFA6	22	42483141	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	1229925	42483141	8821425	115	70779										
ASB11	0	genome.wustl.edu	37	chrX	15306047	15306047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ccacgctgctttttggagccGccagatcaagcgcacttttg	10	13	1	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	15306047	15306047	G	A	SNP	ASB11	ENST00000480796	human	ensembl	69_37n	-1	known	missense	c.803	p.A268V	0.985	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192	144	0	0	44	11	20	-	-	-	A	15306047	G	A	15306047	3	1	854	1	0	0	0	0	1	0	0	0	1019	1087	38	1	176	1	ASB11	23	15306047	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09		15306047	139964513	116	70780										
RAI2	0	genome.wustl.edu	37	chrX	17819682	17819682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	ggaagaggttgttgtggatgGtactggaggagcatggggcc	20	4	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	17819682	17819682	G	T	SNP	RAI2	ENST00000331511	human	ensembl	69_37n	-1	known	missense	c.449	p.T150N	0.869	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831	58	0	0	30	4	11.76	-	-	-	T	17819682	G	T	17819682	3	4	854	1	0	0	0	0	1	0	0	0	13092	1261	44	4	1147	4	RAI2	23	17819682	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	2513635	17819682	137450878	117	70781										
USP9X	0	genome.wustl.edu	37	chrX	41043849	41043849	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	aatagccaagcttttgctaaCtgccattggctatggtcatg	9	9	1	0			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	41043849	41043849	C	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.3479	p.T1160S	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	157	0	0	34	22	39.29	-	-	-	G	41043849	C	G	41043849	3	3	854	1	0	0	0	0	1	0	0	0	17187	565	20	4	3565	4	USP9X	23	41043849	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	23224167	41043849	114226711	118	70782										
KDM6A	0	genome.wustl.edu	37	chrX	44913106	44913106	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	acactgtagatctcctgggaGataaagccaccaaggaaagc	10	10	1	2			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	44913106	44913106	G	C	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	missense	c.781	p.D261H	1.000	pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	165	0	0	33	10	23.26	-	-	-	C	44913106	G	C	44913106	3	2	854	1	0	0	0	0	1	0	0	0	8190	942	33	2	819	2	KDM6A	23	44913106	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	3869257	44913106	110357454	119	70783										
CXorf57	0	genome.wustl.edu	37	chrX	105879795	105879795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gcatattttgtgtgtacacaGttgaaagttgtcagaaatga	10	4	1	3			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	105879795	105879795	G	T	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	missense	c.1326	p.Q442H	0.998	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	210	0	0	56	13	18.84	-	-	-	T	105879795	G	T	105879795	3	4	854	1	0	0	0	0	1	0	0	0	4144	1020	36	4	1352	4	CXorf57	23	105879795	Missense_Mutation	SNP	G	TCGA-E9-A1RF-01A-11D-A159-09	60966689	105879795	49390765	120	70784										
F8	0	genome.wustl.edu	37	chrX	154133160	154133160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	11	0.79133532817198	1.0854319949548	1.65281690140845	0.566680080482897	0.135051828924248	0.62934362934363	0	gggtgccatatgatgttgcaCtttccaaaagtaagttttgg	11	6	0	1			TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	154133160	154133160	C	A	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5512	p.V1838L	0.931	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	223	0	0	27	46	63.01	-	-	-	A	154133160	C	A	154133160	3	1	854	1	0	0	0	0	1	0	0	0	5387	565	20	4	1615	4	F8	23	154133160	Missense_Mutation	SNP	C	TCGA-E9-A1RF-01A-11D-A159-09	48253365	154133160	1137400	121	70785										
PTCHD2	0	genome.wustl.edu	37	chr1	11594443	11594443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	catctctccccacagaccacGtacaagggcaaatcctcctt	5	17	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	1	11594443	11594443	G	A	SNP	PTCHD2	ENST00000304391	human	ensembl	69_37n	1	putative	missense	c.40	p.V14I	0.997	NULL	NULL	-	no_errors	PTCHD2	HGNC	ENSG00000204624	40	0	0	14	5	26.32	-	-	-	A	11594443	G	A	11594443	3	1	855	1	0	0	0	0	1	0	0	0	12813	1132	40	1	3447	1	PTCHD2	1	11594443	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09		11594443	237656178	1	70786										
VPS13D	0	genome.wustl.edu	37	chr1	12378344	12378344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	agtagttaccaagcggtcttCccttcctgtgtccaatgaaa	8	11	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	1	12378344	12378344	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.7364	p.S2455F	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	46	0	0	30	17	36.17	-	-	-	T	12378344	C	T	12378344	3	4	855	1	0	0	0	0	1	0	0	0	17289	855	30	2	7482	2	VPS13D	1	12378344	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	783901	12378344	236872277	2	70787										
BTF3L4	0	genome.wustl.edu	37	chr1	52530570	52530571	+	Frame_Shift_Ins	INS	-	-	A													0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	aaaaagcttcagagttctctINSaaaaaaactggctgtgaata							TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	1	52530570	52530571	-	A	INS	BTF3L4	ENST00000313334	human	ensembl	69_37n	1	known	frame_shift_ins	c.128_129	p.L46fs	0.999:0.252	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	BTF3L4	HGNC	ENSG00000134717	75	0	0	35	9	20.45	-	-	-	A	52530571	-	A	52530570	7	5	855	1	0	1	1	0	0	0	0	0	1561	1522	53	0	134	0	BTF3L4	1	52530570	Frame_Shift_Ins	INS	-	TCGA-E9-A1RG-01A-11D-A14G-09	40152226	52530570	196720051	3	70788										
MAT2A	0	genome.wustl.edu	37	chr2	85769862	85769862	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gaggtctgtgccggagggttCttgttcaggtatacactctt	13	8	4	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	2	85769862	85769862	C	G	SNP	MAT2A	ENST00000306434	human	ensembl	69_37n	1	known	missense	c.943	p.L315V	1.000	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906	70	0	0	38	66	63.46	-	-	-	G	85769862	C	G	85769862	3	3	855	1	0	0	0	0	1	0	0	0	9401	913	32	2	969	2	MAT2A	2	85769862	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		85769862	157429511	4	70789										
OSGEPL1	0	genome.wustl.edu	37	chr2	190620045	190620045	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tactttattggtcaacctaaTagtaagtgcatgagcctcca	7	9	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	2	190620045	190620045	T	C	SNP	OSGEPL1	ENST00000264151	human	ensembl	69_37n	-1	known	missense	c.463	p.I155V	0.998	pfam_Peptidase_M22,tigrfam_Peptidase_M22_subgr	pfam_Peptidase_M22,prints_Peptidase_M22_subgr,tigrfam_Peptidase_M22_subgr	-	no_errors	OSGEPL1	HGNC	ENSG00000128694	47	0	0	37	13	26	-	-	-	C	190620045	T	C	190620045	3	2	855	1	0	0	0	0	1	0	0	0	11361	1406	49	5	805	5	OSGEPL1	2	190620045	Missense_Mutation	SNP	T	TCGA-E9-A1RG-01A-11D-A14G-09	104850183	190620045	52579328	5	70790										
TSEN2	0	genome.wustl.edu	37	chr3	12531481	12531481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ggaggacattgagcagctctAtgggaaagtaagtgcaggca	15	6	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	3	12531481	12531481	A	G	SNP	TSEN2	ENST00000284995	human	ensembl	69_37n	1	known	missense	c.182	p.Y61C	0.975	pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743	31	0	0	22	8	26.67	-	-	-	G	12531481	A	G	12531481	3	3	855	1	0	0	0	0	1	0	0	0	16708	449	16	5	184	5	TSEN2	3	12531481	Missense_Mutation	SNP	A	TCGA-E9-A1RG-01A-11D-A14G-09		12531481	185490949	6	70791										
DHX30	0	genome.wustl.edu	37	chr3	47882665	47882665	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ccacgctccactcagggactCaaggtacagatggaggatgg	13	11	2	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	3	47882665	47882665	C	G	SNP	DHX30	ENST00000445061	human	ensembl	69_37n	1	known	nonsense	c.665	p.S222*	0.972	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153	39	0	0	23	6	20.69	-	-	-	G	47882665	C	G	47882665	4	3	855	1	0	0	0	0	0	1	0	0	4540	838	29	2	694	2	DHX30	3	47882665	Nonsense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	35351184	47882665	150139765	7	70792										
LAMB2	0	genome.wustl.edu	37	chr3	49163267	49163267	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tccaggcttgcacaggcactGaccaccatgagggttgcact	11	13	0	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	3	49163267	49163267	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	nonsense	c.2401	p.Q801*	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	41	0	0	19	10	34.48	-	-	-	A	49163267	G	A	49163267	4	1	855	1	0	0	0	0	0	1	0	0	8665	1299	45	2	3055	2	LAMB2	3	49163267	Nonsense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	1280602	49163267	148859163	8	70793										
ACAD11	0	genome.wustl.edu	37	chr3	132277850	132277850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	cagtcttttggcttggtcccGcagctccattgttgcgattg	11	11	1	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	3	132277850	132277850	G	A	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.2308	p.R770W	0.037	superfamily_AcylCo_DH/oxidase_C	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	39	0	0	11	6	35.29	-	-	-	A	132277850	G	A	132277850	3	1	855	1	0	0	0	0	1	0	0	0	109	1086	38	1	38	1	ACAD11	3	132277850	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	83114583	132277850	65744580	9	70794										
RNF168	0	genome.wustl.edu	37	chr3	196199594	196199594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	aaagtgtcggcatatcttctAtttctgtgtcttgccctgtt	8	9	4	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	3	196199594	196199594	A	G	SNP	RNF168	ENST00000318037	human	ensembl	69_37n	-1	known	missense	c.812	p.I271T	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	35	0	0	17	5	22.73	-	-	-	G	196199594	A	G	196199594	3	3	855	1	0	0	0	0	1	0	0	0	13545	449	16	5	907	5	RNF168	3	196199594	Missense_Mutation	SNP	A	TCGA-E9-A1RG-01A-11D-A14G-09	63921744	196199594	1822836	10	70795										
ANK2	0	genome.wustl.edu	37	chr4	114203939	114203939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ttgtgacaaagcaaggagtaActccactccatctggcctcg	9	12	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	4	114203939	114203939	A	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.1990	p.T664P	0.363	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	38	0	0	28	17	37.78	-	-	-	C	114203939	A	C	114203939	3	2	855	1	0	0	0	0	1	0	0	0	621	43	2	5	2085	5	ANK2	4	114203939	Missense_Mutation	SNP	A	TCGA-E9-A1RG-01A-11D-A14G-09		114203939	76950337	11	70796										
MFSD8	0	genome.wustl.edu	37	chr4	128886286	128886286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ctttcgttccgcaggccggcCatagttacactccctacaag	8	15	0	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	4	128886286	128886286	C	T	SNP	MFSD8	ENST00000296468	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	0.738	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073	20	0	0	5	6	54.55	-	-	-	T	128886286	C	T	128886286	3	4	855	1	0	0	0	0	1	0	0	0	9609	594	21	4	1601	4	MFSD8	4	128886286	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	14682347	128886286	62267990	12	70797										
ZNF330	0	genome.wustl.edu	37	chr4	142150852	142150852	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	acgaggcgtgtgggaccatgGtgagtcattagacacaagta	14	7	1	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	4	142150852	142150852	G	T	SNP	ZNF330	ENST00000262990	human	ensembl	69_37n	1	known	splice_site	c.418+1	e5+1	1.000	-	-	-	no_errors	ZNF330	HGNC	ENSG00000109445	61	0	0	35	10	22.22	-	-	-	T	142150852	G	T	142150852	5	4	855	1	0	0	0	0	0	0	1	0	17944	1275	44	4	437	4	ZNF330	4	142150852	Splice_Site	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	13264566	142150852	49003424	13	70798										
FSTL5	0	genome.wustl.edu	37	chr4	162680584	162680584	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gaatgctctataaaattcttCaagagccaggtgcttgtcag	9	8	4	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	4	162680584	162680584	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.706	p.E236K	1.000	NULL	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	52	0	0	28	5	15.15	-	-	-	T	162680584	C	T	162680584	3	4	855	1	0	0	0	0	1	0	0	0	6129	835	29	2	1881	2	FSTL5	4	162680584	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	20529732	162680584	28473692	14	70799										
CKMT2	0	genome.wustl.edu	37	chr5	80553653	80553653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tatgaaacgagtatttgagcGattctgtcgtggactaaaag	11	5	1	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	5	80553653	80553653	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	69_37n	1	known	missense	c.857	p.R286Q	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730	48	0	0	32	10	23.81	-	-	-	A	80553653	G	A	80553653	3	1	855	1	0	0	0	0	1	0	0	0	3481	1058	37	1	879	1	CKMT2	5	80553653	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09		80553653	100361607	15	70800										
ARRDC3	0	genome.wustl.edu	37	chr5	90670780	90670780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gattatactacagtcgaggaTagagggagaaactggtggaa	14	4	0	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	5	90670780	90670780	T	C	SNP	ARRDC3	ENST00000265138	human	ensembl	69_37n	-1	known	missense	c.829	p.I277V	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369	38	0	0	29	14	32.56	-	-	-	C	90670780	T	C	90670780	3	2	855	1	0	0	0	0	1	0	0	0	988	1406	49	5	431	5	ARRDC3	5	90670780	Missense_Mutation	SNP	T	TCGA-E9-A1RG-01A-11D-A14G-09	10117127	90670780	90244480	16	70801										
PCDHA2	0	genome.wustl.edu	37	chr5	140174750	140174750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ccgcgcctgttccgggtggcGtccaaaagacacggggacct	14	14	0	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	5	140174750	140174750	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	1	known	silent	c.201	p.A67	0.493	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	30	0	0	24	10	29.41	-	-	-	A	140174750	G	A	140174750	2	1	855	1	0	0	0	0	0	0	0	1	11597	1132	40	1		1	PCDHA2	5	140174750	Silent	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	49503970	140174750	40740510	17	70802										
PCDHGA1	0	genome.wustl.edu	37	chr5	140711823	140711823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	cgatccttcgactatgagcaGttccgggacatgcaactgaa	10	11	0	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	5	140711823	140711823	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	silent	c.1572	p.Q524	0.914	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	41	0	0	27	8	22.86	-	-	-	A	140711823	G	A	140711823	2	1	855	1	0	0	0	0	0	0	0	1	11623	1020	36	4		4	PCDHGA1	5	140711823	Silent	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	537073	140711823	40203437	18	70803										
ODZ2	0	genome.wustl.edu	37	chr5	167645851	167645851	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gccccgtcacctgctcatgcCtgacaaccagatcatcaccc	6	19	4	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	5	167645851	167645851	C	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.4955	p.P1652H	1.000	superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	22	0	0	11	5	31.25	-	-	-	A	167645851	C	A	167645851	3	1	855	1	0	0	0	0	1	0	0	0	10908	681	24	4	5018	4	ODZ2	5	167645851	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	26934028	167645851	13269409	19	70804										
TCP10	0	genome.wustl.edu	37	chr6	167790110	167790110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gtgctggacttctgtcttgaCgtctcccgggaggacttttc	12	11	3	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	6	167790110	167790110	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.001	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	28	0	0	13	4	23.53	-	-	-	T	167790110	C	T	167790110	3	4	855	1	0	0	0	0	1	0	0	0	15805	536	19	1	496	1	TCP10	6	167790110	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		167790110	3324957	20	70805										
C7orf26	0	genome.wustl.edu	37	chr7	6634119	6634119	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	aaggcccttgtagatgactaCtgctgtttggtgccgggatc	13	9	0	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	7	6634119	6634119	C	A	SNP	C7orf26	ENST00000344417	human	ensembl	69_37n	1	known	nonsense	c.468	p.Y156*	1.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576	69	0	0	51	21	29.17	-	-	-	A	6634119	C	A	6634119	4	1	855	1	0	0	0	0	0	1	0	0	2404	576	20	4	478	4	C7orf26	7	6634119	Nonsense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		6634119	152504544	21	70806										
ABCA13	0	genome.wustl.edu	37	chr7	48314170	48314170	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tcttggtattcaactgataaGggatgtgttcaactccttaa	8	7	3	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	7	48314170	48314170	G	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.4907	p.R1636T	0.341	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	55	0	0	27	36	57.14	-	-	-	C	48314170	G	C	48314170	3	2	855	1	0	0	0	0	1	0	0	0	31	1000	35	4	4802	4	ABCA13	7	48314170	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	41680051	48314170	110824493	22	70807										
LAMB4	0	genome.wustl.edu	37	chr7	107684275	107684275	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	actttggtttcttatatttcCcagtttttccctcagctgta	5	10	2	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	7	107684275	107684275	C	G	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.4393	p.G1465R	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	104	1	0.94	69	18	20.69	-	-	-	G	107684275	C	G	107684275	3	3	855	1	0	0	0	0	1	0	0	0	8667	632	22	4	916	4	LAMB4	7	107684275	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	59370105	107684275	51454388	23	70808										
H2AFY2	0	genome.wustl.edu	37	chr10	71835425	71835425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ctgaagcaagatgtcgggccGgagtgggaagaagaaaatgt	16	5	0	4			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	10	71835425	71835425	G	A	SNP	H2AFY2	ENST00000373255	human	ensembl	69_37n	1	known	missense	c.11	p.R4Q	1.000	smart_Histone_H2A,pirsf_Core_histone_macro-H2A	pfam_A1pp,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_A1pp,pirsf_Core_histone_macro-H2A,pfscan_A1pp,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284	63	0	0	30	11	26.19	-	-	-	A	71835425	G	A	71835425	3	1	855	1	0	0	0	0	1	0	0	0	6981	1116	39	1	13	1	H2AFY2	10	71835425	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09		71835425	63699322	24	70809										
MINPP1	0	genome.wustl.edu	37	chr10	89268241	89268241	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ccagaaatgcagaacattttAaaaaaagttgcagctacttt	6	7	0	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	10	89268241	89268241	A	T	SNP	MINPP1	ENST00000371996	human	ensembl	69_37n	1	known	missense	c.786	p.L262F	0.876	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789	29	0	0	29	9	23.68	-	-	-	T	89268241	A	T	89268241	3	4	855	1	0	0	0	0	1	0	0	0	9659	359	13	5	830	5	MINPP1	10	89268241	Missense_Mutation	SNP	A	TCGA-E9-A1RG-01A-11D-A14G-09	17432816	89268241	46266506	25	70810										
CCDC73	0	genome.wustl.edu	37	chr11	32675581	32675581	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	atcttctcatttaattccaaTtcctttaaaatttgaatagt	2	7	2	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	11	32675581	32675581	T	G	SNP	CCDC73	ENST00000335185	human	ensembl	69_37n	-1	known	missense	c.777	p.E259D	0.987	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714	68	0	0	32	12	27.27	-	-	-	G	32675581	T	G	32675581	3	3	855	1	0	0	0	0	1	0	0	0	2873	1490	52	5	2494	5	CCDC73	11	32675581	Missense_Mutation	SNP	T	TCGA-E9-A1RG-01A-11D-A14G-09		32675581	102330935	26	70811										
GANAB	0	genome.wustl.edu	37	chr11	62394094	62394094	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gggtcatccttcatacattcTgaagaccgccgcactcgcat	8	14	3	2			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	11	62394094	62394094	T	G	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	silent	c.2526	p.S842	0.969	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	28	0	0	10	23	69.7	-	-	-	G	62394094	T	G	62394094	2	3	855	1	0	0	0	0	0	0	0	1	6283	1567	55	5		5	GANAB	11	62394094	Silent	SNP	T	TCGA-E9-A1RG-01A-11D-A14G-09	29718513	62394094	72612422	27	70812										
SUV420H1	0	genome.wustl.edu	37	chr11	67925891	67925891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gacccatcaaatctggtaccGcgtcgtcttttccaggagaa	9	12	3	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	11	67925891	67925891	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	69_37n	-1	known	missense	c.1922	p.A641V	0.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066	65	0	0	39	17	30.36	-	-	-	A	67925891	G	A	67925891	3	1	855	1	0	0	0	0	1	0	0	0	15505	1087	38	1	739	1	SUV420H1	11	67925891	Missense_Mutation	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	5531797	67925891	67080625	28	70813										
ACACB	0	genome.wustl.edu	37	chr12	109654462	109654462	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	ggctatatgaaaacagtggtGttggatctcctgagaagata	12	5	1	3			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	12	109654462	109654462	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	silent	c.3390	p.V1130	0.985	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	66	0	0	24	4	14.29	-	-	-	T	109654462	G	T	109654462	2	4	855	1	0	0	0	0	0	0	0	1	107	1364	48	4		4	ACACB	12	109654462	Silent	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09		109654462	24197433	29	70814										
PCID2	0	genome.wustl.edu	37	chr13	113838712	113838712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	cgtccaacgtagtatttgtaTgttactctctgtgcagtgct	9	9	1	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	13	113838712	113838712	T	C	SNP	PCID2	ENST00000246505	human	ensembl	69_37n	-1	known	silent	c.795	p.T265	0.012	smart_PAM	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226	97	0	0	11	37	77.08	-	-	-	C	113838712	T	C	113838712	2	2	855	1	0	0	0	0	0	0	0	1	11652	1451	51	5		5	PCID2	13	113838712	Silent	SNP	T	TCGA-E9-A1RG-01A-11D-A14G-09		113838712	1331166	30	70815										
SUPT16H	0	genome.wustl.edu	37	chr14	21834653	21834653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	cttctgctttttaaccacgtCcatgacagcgttatacacgt	6	12	1	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	14	21834653	21834653	C	A	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.991	p.D331Y	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	66	0	0	44	11	20	-	-	-	A	21834653	C	A	21834653	3	1	855	1	0	0	0	0	1	0	0	0	15487	855	30	2	2228	2	SUPT16H	14	21834653	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		21834653	85514887	31	70816										
CARM1	0	genome.wustl.edu	37	chr19	11027383	11027383	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tgtccacaggtaccagccatCtttccatggagtggacctgt	10	12	1	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	19	11027383	11027383	C	T	SNP	CARM1	ENST00000327064	human	ensembl	69_37n	1	known	missense	c.950	p.S317F	1.000	pfam_Arg_MeTrfase	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	30	0	0	31	13	29.55	-	-	-	T	11027383	C	T	11027383	3	4	855	1	0	0	0	0	1	0	0	0	2680	913	32	2	980	2	CARM1	19	11027383	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		11027383	48101600	32	70817										
PRKCSH	0	genome.wustl.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	19	11558370	11558370	G	A	SNP	PRKCSH	ENST00000252455	human	ensembl	69_37n	1	known	silent	c.966	p.E322	0.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_HAND_2	-	no_errors	PRKCSH	HGNC	ENSG00000130175	15	0	0	24	8	25	-	-	-	A	11558370	G	A	11558370	2	1	855	1	0	0	0	0	0	0	0	1	12597	991	35	4		4	PRKCSH	19	11558370	Silent	SNP	G	TCGA-E9-A1RG-01A-11D-A14G-09	530987	11558370	47570613	33	70818										
ZNF671	0	genome.wustl.edu	37	chr19	58232276	58232276	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	tgcatacataaggcctggctCctgtgtgaacttcctggtgt	11	10	0	1			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	19	58232276	58232276	C	G	SNP	ZNF671	ENST00000317398	human	ensembl	69_37n	-1	known	missense	c.1178	p.G393A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	30	0	0	22	20	47.62	-	-	-	G	58232276	C	G	58232276	3	3	855	1	0	0	0	0	1	0	0	0	18174	855	30	2	430	2	ZNF671	19	58232276	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09	46673906	58232276	896707	34	70819										
MID1	0	genome.wustl.edu	37	chrX	10491176	10491176	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.142857142857143	5	0.376530104927713	1.81182795698925	2.415770609319	1.55299539170507	1	1	0	gagtttagccaaaagggtctCcagttctgtgttcctcttaa	9	9	3	0			TCGA-E9-A1RG-01A-11D-A14G-09	TCGA-E9-A1RG-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81896525-0e3f-47ff-9b0d-95b45aef718c	6db47e2e-f864-4b04-8a81-45bf16681178	X	10491176	10491176	C	G	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.712	p.E238Q	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	88	0	0	40	18	31.03	-	-	-	G	10491176	C	G	10491176	3	3	855	1	0	0	0	0	1	0	0	0	9647	864	30	2	1323	2	MID1	23	10491176	Missense_Mutation	SNP	C	TCGA-E9-A1RG-01A-11D-A14G-09		10491176	144779384	35	70820										
TGFBR3	0	genome.wustl.edu	37	chr1	92185007	92185007	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aacagggtgacgtccatcccCgagtagccactggcctaaaa	10	13	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	92185007	92185007	C	T	SNP	TGFBR3	ENST00000212355	human	ensembl	69_37n	-1	known	silent	c.1428	p.S476	0.000	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	TGFBR3	HGNC	ENSG00000069702	35	0	0	30	7	18.92	-	-	-	T	92185007	C	T	92185007	2	4	856	1	0	0	0	0	0	0	0	1	15918	639	23	1		1	TGFBR3	1	92185007	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		92185007	157065614	1	70821										
OTUD7B	0	genome.wustl.edu	37	chr1	149943095	149943095	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tggagccaccactcccctcaCtaaaggatgggggtaggttt	12	11	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	149943095	149943095	C	A	SNP	OTUD7B	ENST00000369135	human	ensembl	69_37n	-1	known	missense	c.170	p.S57I	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113	54	0	0	47	9	16.07	-	-	-	A	149943095	C	A	149943095	3	1	856	1	0	0	0	0	1	0	0	0	11392	565	20	4	2401	4	OTUD7B	1	149943095	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	57758088	149943095	99307526	2	70822										
RPTN	0	genome.wustl.edu	37	chr1	152129314	152129314	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tgtgacttattgtctagcttAtgatagcaggcttggaccaa	10	7	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	152129314	152129314	A	C	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.261	p.H87Q	0.042	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	167	0	0	116	18	13.43	-	-	-	C	152129314	A	C	152129314	3	2	856	1	0	0	0	0	1	0	0	0	13750	446	16	5	2097	5	RPTN	1	152129314	Missense_Mutation	SNP	A	TCGA-E9-A1RH-01A-21D-A167-09	2186219	152129314	97121307	3	70823										
ASH1L	0	genome.wustl.edu	37	chr1	155449169	155449171	+	In_Frame_Del	DEL	AGG	AGG	-													0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ggagaatttggcaacaaagtAggaggagataaccgcctcct							TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	155449169	155449171	AGG	-	DEL	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	in_frame_del	c.3492_3490	p.P1164in_frame_del	0.952:1.000:1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	44	0	0	34	4	10.53	-	-	-	-	155449171	AGG	-	155449169	7	5	856	1	0	1	0	1	0	0	0	0	1045	407	15	0	5506	0	ASH1L	1	155449169	In_Frame_Del	DEL	AGG	TCGA-E9-A1RH-01A-21D-A167-09	3319855	155449169	93801452	4	70824										
VASH2	0	genome.wustl.edu	37	chr1	213145986	213145986	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gctttaaaacctacttctcaGgaaactactttcaccacgtt	4	12	2	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	213145986	213145986	G	T	SNP	VASH2	ENST00000517399	human	ensembl	69_37n	1	known	nonsense	c.562	p.G188*	1.000	NULL	NULL	-	no_errors	VASH2	HGNC	ENSG00000143494	81	0	0	58	10	14.71	-	-	-	T	213145986	G	T	213145986	4	4	856	1	0	0	0	0	0	1	0	0	17223	1001	35	4	580	4	VASH2	1	213145986	Nonsense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	57696817	213145986	36104635	5	70825										
TBC1D8	0	genome.wustl.edu	37	chr2	101650049	101650049	+	Frame_Shift_Del	DEL	A	A	-													0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tccggtgggcataggccgtcAagactctcctcaaagcagca							TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	101650049	101650049	A	-	DEL	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	frame_shift_del	c.1775	p.L592fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	83	0	0	81	17	17.35	-	-	-	-	101650049	A	-	101650049	7	5	856	1	0	1	0	1	0	0	0	0	15720	131	5	0	1736	0	TBC1D8	2	101650049	Frame_Shift_Del	DEL	A	TCGA-E9-A1RH-01A-21D-A167-09		101650049	141549324	6	70826										
UBR3	0	genome.wustl.edu	37	chr2	170780651	170780651	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	taccagatcaggaaatgttaAtgaaactaatgattcaccca	6	8	2	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	170780651	170780651	A	C	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	1	known	missense	c.1990	p.M664L	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	50	0	0	21	13	38.24	-	-	-	C	170780651	A	C	170780651	3	2	856	1	0	0	0	0	1	0	0	0	17000	101	4	5	2040	5	UBR3	2	170780651	Missense_Mutation	SNP	A	TCGA-E9-A1RH-01A-21D-A167-09	69130602	170780651	72418722	7	70827										
TTN	0	genome.wustl.edu	37	chr2	179469856	179469856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cgggatacctcttccttggtTatctgaagtgcatcagtggg	12	9	3	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	179469856	179469856	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.46344	p.I15448M	0.997	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	77	0	0	73	9	10.98	-	-	-	C	179469856	T	C	179469856	3	2	856	1	0	0	0	0	1	0	0	0	16832	1744	61	5	53977	5	TTN	2	179469856	Missense_Mutation	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	8689205	179469856	63729517	8	70828										
TTN	0	genome.wustl.edu	37	chr2	179499514	179499514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tagaggacttcaccagcttgGtccagtttgactttgtgcaa	10	9	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	179499514	179499514	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.34383	p.D11461E	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	108	0	0	62	36	36.73	-	-	-	T	179499514	G	T	179499514	3	4	856	1	0	0	0	0	1	0	0	0	16832	1252	44	4	66142	4	TTN	2	179499514	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	29658	179499514	63699859	9	70829										
ZNF142	0	genome.wustl.edu	37	chr2	219513520	219513520	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gcagaaggtgcagcgcagctCttcactgccagggtggccct	14	13	2	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	219513520	219513520	C	T	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	missense	c.1111	p.E371K	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	48	0	0	48	12	20	-	-	-	T	219513520	C	T	219513520	3	4	856	1	0	0	0	0	1	0	0	0	17827	922	32	2	3972	2	ZNF142	2	219513520	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	40014006	219513520	23685853	10	70830										
STK25	0	genome.wustl.edu	37	chr2	242437657	242437657	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gccaggaacagaccttctgtGaactgtgcagggccgtcccc	12	14	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	242437657	242437657	G	A	SNP	STK25	ENST00000316586	human	ensembl	69_37n	-1	known	missense	c.1025	p.S342L	0.856	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK25	HGNC	ENSG00000115694	38	0	0	55	7	11.29	-	-	-	A	242437657	G	A	242437657	3	1	856	1	0	0	0	0	1	0	0	0	15385	1294	45	2	271	2	STK25	2	242437657	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	22924137	242437657	761716	11	70831										
C3orf32	0	genome.wustl.edu	37	chr3	8671361	8671361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	atgactcaccgtgcccgcccCgtggcagccgctgcacttgt	11	17	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	8671361	8671361	C	G	SNP	C3orf32	ENST00000544814	human	ensembl	69_37n	-1	known	missense	c.577	p.G193R	0.333	superfamily_HSP_DnaJ_Cys-rich_dom	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	C3orf32	HGNC	ENSG00000125046	54	0	0	19	76	80	-	-	-	G	8671361	C	G	8671361	3	3	856	1	0	0	0	0	1	0	0	0	2242	652	23	3	574	3	C3orf32	3	8671361	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		8671361	189351069	12	70832										
TMEM115	0	genome.wustl.edu	37	chr3	50392784	50392784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tggtctggagttacagcgtcGggggagctgcctcgaaggtg	18	8	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	50392784	50392784	G	A	SNP	TMEM115	ENST00000266025	human	ensembl	69_37n	-1	known	missense	c.1046	p.P349L	0.294	NULL	pfam_DUF1751_Mem_euk	-	no_errors	TMEM115	HGNC	ENSG00000126062	30	0	0	18	9	33.33	-	-	-	A	50392784	G	A	50392784	3	1	856	1	0	0	0	0	1	0	0	0	16124	1116	39	1	13	1	TMEM115	3	50392784	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	41721423	50392784	147629646	13	70833										
FLNB	0	genome.wustl.edu	37	chr3	58087962	58087962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	atgcctgccgggccagtggcCgaggcctacaacccaaaggc	13	15	0	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	58087962	58087962	C	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.1378	p.R460G	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	44	0	0	34	11	24.44	-	-	-	G	58087962	C	G	58087962	3	3	856	1	0	0	0	0	1	0	0	0	5980	644	23	3	1412	3	FLNB	3	58087962	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	7695178	58087962	139934468	14	70834										
QTRTD1	0	genome.wustl.edu	37	chr3	113795785	113795785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cagagctgccggaggacaagCcaaggccagtgttcggttag	15	10	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	113795785	113795785	C	T	SNP	QTRTD1	ENST00000281273	human	ensembl	69_37n	1	known	missense	c.742	p.P248S	1.000	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_tRNA_ribo_trans	pfam_tRNA_ribo_trans,superfamily_tRNA_ribo_trans,tigrfam_tRNA_ribo_trans	-	no_errors	QTRTD1	HGNC	ENSG00000151576	31	0	0	50	6	10.71	-	-	-	T	113795785	C	T	113795785	3	4	856	1	0	0	0	0	1	0	0	0	12969	739	26	4	760	4	QTRTD1	3	113795785	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	55707823	113795785	84226645	15	70835										
ADCY5	0	genome.wustl.edu	37	chr3	123051483	123051483	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tcctgtgcagtgcactgggaCgccaggctggtgaagccctc	14	13	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	123051483	123051483	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	silent	c.1446	p.A482	0.005	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	31	0	0	45	8	14.81	-	-	-	T	123051483	C	T	123051483	2	4	856	1	0	0	0	0	0	0	0	1	297	523	19	1		1	ADCY5	3	123051483	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	9255698	123051483	74970947	16	70836										
PLS1	0	genome.wustl.edu	37	chr3	142430425	142430425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agttcgtcaagaaatgatcaGgagagaaaacttatctgatg	10	5	3	4			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	142430425	142430425	G	A	SNP	PLS1	ENST00000337777	human	ensembl	69_37n	1	known	missense	c.1712	p.R571K	0.999	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS1	HGNC	ENSG00000120756	60	0	0	72	9	11.11	-	-	-	A	142430425	G	A	142430425	3	1	856	1	0	0	0	0	1	0	0	0	12181	1000	35	4	1766	4	PLS1	3	142430425	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	19378942	142430425	55592005	17	70837										
OPA1	0	genome.wustl.edu	37	chr3	193355804	193355804	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tggaaatgattgcccaagctCgaatattcccaagaggatct	9	9	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	193355804	193355804	C	T	SNP	OPA1	ENST00000361510	human	ensembl	69_37n	1	known	nonsense	c.1099	p.R367*	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	-	no_errors	OPA1	HGNC	ENSG00000198836	145	1	0.68	252	36	12.5	-	-	-	T	193355804	C	T	193355804	4	4	856	1	0	0	0	0	0	1	0	0	10944	876	31	1	1141	1	OPA1	3	193355804	Nonsense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	50925379	193355804	4666626	18	70838										
AMBN	0	genome.wustl.edu	37	chr4	71471931	71471931	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gaagacccaatggcctatggAgccatgtttccaggatttgg	12	9	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	71471931	71471931	A	G	SNP	AMBN	ENST00000322937	human	ensembl	69_37n	1	known	silent	c.828	p.G276	0.976	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522	47	0	0	20	7	25.93	-	-	-	G	71471931	A	G	71471931	2	3	856	1	0	0	0	0	0	0	0	1	563	291	11	5		5	AMBN	4	71471931	Silent	SNP	A	TCGA-E9-A1RH-01A-21D-A167-09		71471931	119682345	19	70839										
MMRN1	0	genome.wustl.edu	37	chr4	90857362	90857362	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ccagcaaaatatgagtcattTggaagaaaaactactcttaa	6	7	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	90857362	90857362	T	A	SNP	MMRN1	ENST00000264790	human	ensembl	69_37n	1	known	nonsense	c.2531	p.L844*	0.495	NULL	pfam_C1q,pfam_EMI_domain,pfam_EGF-like_dom,superfamily_Tumour_necrosis_fac-like,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain,prints_C1q	-	no_errors	MMRN1	HGNC	ENSG00000138722	40	0	0	19	8	29.63	-	-	-	A	90857362	T	A	90857362	4	1	856	1	0	0	0	0	0	1	0	0	9742	1821	63	5	2553	5	MMRN1	4	90857362	Nonsense_Mutation	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	19385431	90857362	100296914	20	70840										
HPGDS	0	genome.wustl.edu	37	chr4	95239059	95239059	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aatatcttgctattgctaggCtctggtgaagagtaagtcca	10	7	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	95239059	95239059	C	A	SNP	HPGDS	ENST00000295256	human	ensembl	69_37n	-1	known	missense	c.191	p.S64I	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	HPGDS	HGNC	ENSG00000163106	74	0	0	53	19	26.39	-	-	-	A	95239059	C	A	95239059	3	1	856	1	0	0	0	0	1	0	0	0	7386	797	28	4	424	4	HPGDS	4	95239059	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	4381697	95239059	95915217	21	70841										
GALNTL6	0	genome.wustl.edu	37	chr4	173961139	173961141	+	In_Frame_Del	DEL	AGA	AGA	-													0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	catggattgcaaccccgcagAgaagaagattttcatggcca							TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	173961139	173961141	AGA	-	DEL	GALNTL6	ENST00000506823	human	ensembl	69_37n	1	known	in_frame_del	c.1694_1696	p.K567in_frame_del	1.000:1.000:1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	73	0	0	93	16	14.68	-	-	-	-	173961141	AGA	-	173961139	7	5	856	1	0	1	0	1	0	0	0	0	6275	304	11	0	1740	0	GALNTL6	4	173961139	In_Frame_Del	DEL	AGA	TCGA-E9-A1RH-01A-21D-A167-09	78722080	173961139	17193137	22	70842										
KIAA0947	0	genome.wustl.edu	37	chr5	5465079	5465079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tcccagggaacctccctccaGctgaagttgcaacaacaaat	7	14	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	5465079	5465079	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.5632	p.A1878T	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	67	0	0	81	13	13.83	-	-	-	A	5465079	G	A	5465079	3	1	856	1	0	0	0	0	1	0	0	0	8254	971	34	4	5682	4	KIAA0947	5	5465079	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		5465079	175450181	23	70843										
CTNND2	0	genome.wustl.edu	37	chr5	11082867	11082867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gcagcgcagtggccaccgcgCacaccacacggtcattgtct	11	16	2	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	11082867	11082867	C	A	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.2729	p.C910F	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	58	0	0	56	46	45.1	-	-	-	A	11082867	C	A	11082867	3	1	856	1	0	0	0	0	1	0	0	0	4052	710	25	4	976	4	CTNND2	5	11082867	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	5617788	11082867	169832393	24	70844										
DMXL1	0	genome.wustl.edu	37	chr5	118500331	118500331	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agctatgggtgtggggtggtGggtccggaatacccgcatct	17	8	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	118500331	118500331	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	1	known	nonsense	c.4832	p.W1611*	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	78	0	0	34	12	26.09	-	-	-	A	118500331	G	A	118500331	4	1	856	1	0	0	0	0	0	1	0	0	4630	1357	47	4	4910	4	DMXL1	5	118500331	Nonsense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	107417464	118500331	62414929	25	70845										
SLC12A2	0	genome.wustl.edu	37	chr5	127474573	127474573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ccattttaattactacattgGtttacgtaggaattgcagta	7	6	0	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	127474573	127474573	G	A	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	1	known	missense	c.1594	p.V532I	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	90	0	0	60	13	17.81	-	-	-	A	127474573	G	A	127474573	3	1	856	1	0	0	0	0	1	0	0	0	14472	1261	44	4	1628	4	SLC12A2	5	127474573	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	8974242	127474573	53440687	26	70846										
PCDHB7	0	genome.wustl.edu	37	chr5	140553150	140553150	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cgcccctgattttgtgcggtCgctctacaaggtgcaggtgc	13	12	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	140553150	140553150	C	G	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	missense	c.734	p.S245W	0.098	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	38	0	0	34	4	10.53	-	-	-	G	140553150	C	G	140553150	3	3	856	1	0	0	0	0	1	0	0	0	11620	893	31	3	736	3	PCDHB7	5	140553150	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	13078577	140553150	40362110	27	70847										
LYRM4	0	genome.wustl.edu	37	chr6	5109694	5109694	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctcgattctcaatgatcagcTtgtcagttgaatacagttgg	9	8	3	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	6	5109694	5109694	T	C	SNP	LYRM4	ENST00000330636	human	ensembl	69_37n	-1	known	missense	c.239	p.K80R	1.000	NULL	pfam_Complex1_LYR	-	no_errors	LYRM4	HGNC	ENSG00000214113	87	0	0	59	19	24.36	-	-	-	C	5109694	T	C	5109694	3	2	856	1	0	0	0	0	1	0	0	0	9188	1609	56	5	40	5	LYRM4	6	5109694	Missense_Mutation	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09		5109694	166005373	28	70848										
NEDD9	0	genome.wustl.edu	37	chr6	11190372	11190372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agccaccgtgtgggtactccGttgagttcatgatgctctcc	11	12	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	6	11190372	11190372	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.1730	p.T577M	0.001	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	60	0	0	47	9	16.07	-	-	-	A	11190372	G	A	11190372	3	1	856	1	0	0	0	0	1	0	0	0	10385	1145	40	1	786	1	NEDD9	6	11190372	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	6080678	11190372	159924695	29	70849										
NAMPT	0	genome.wustl.edu	37	chr7	105893543	105893543	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cgtcctatgtaaagataatcGgccctttttggaccttttgt	8	9	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	7	105893543	105893543	G	A	SNP	NAMPT	ENST00000222553	human	ensembl	69_37n	-1	known	nonsense	c.1285	p.R429*	0.996	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835	72	0	0	73	10	12.05	-	-	-	A	105893543	G	A	105893543	4	1	856	1	0	0	0	0	0	1	0	0	10221	1124	39	1	198	1	NAMPT	7	105893543	Nonsense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		105893543	53245120	30	70850										
ZNF862	0	genome.wustl.edu	37	chr7	149559197	149559197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cgagtgctccctcccaacagGatacagtgaggaagctctgc	11	13	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	7	149559197	149559197	G	T	SNP	ZNF862	ENST00000223210	human	ensembl	69_37n	1	known	missense	c.2948	p.G983V	0.731	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	19	0	0	10	9	47.37	-	-	-	T	149559197	G	T	149559197	3	4	856	1	0	0	0	0	1	0	0	0	18288	1174	41	2	2974	2	ZNF862	7	149559197	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	43665654	149559197	9579466	31	70851										
CHMP7	0	genome.wustl.edu	37	chr8	23114072	23114072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agagtgaacagcttctctcaCgcaaagtggagtccttatcc	9	11	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	23114072	23114072	C	T	SNP	CHMP7	ENST00000313219	human	ensembl	69_37n	1	known	missense	c.757	p.R253C	0.752	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP7	HGNC	ENSG00000147457	60	0	0	24	9	27.27	-	-	-	T	23114072	C	T	23114072	3	4	856	1	0	0	0	0	1	0	0	0	3390	536	19	1	771	1	CHMP7	8	23114072	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		23114072	123249950	32	70852										
VCPIP1	0	genome.wustl.edu	37	chr8	67546842	67546842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tttgtgcttttgaccttgtgGcaaaggctgctcccagtgca	11	10	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	67546842	67546842	G	A	SNP	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	missense	c.3563	p.A1188V	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	60	0	0	79	12	13.19	-	-	-	A	67546842	G	A	67546842	3	1	856	1	0	0	0	0	1	0	0	0	17238	1203	42	4	109	4	VCPIP1	8	67546842	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	44432770	67546842	78817180	33	70853										
ATP6V0D2	0	genome.wustl.edu	37	chr8	87153720	87153720	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tgtctgaaaatgctctagatGaactgaatattgaattgcta	8	5	2	5			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	87153720	87153720	G	T	SNP	ATP6V0D2	ENST00000285393	human	ensembl	69_37n	1	known	nonsense	c.523	p.E175*	1.000	pfam_ATPase_V0/A0-cplx_csu/dsu,superfamily_ATPase_V0/A0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0/A0-cplx_csu/dsu,superfamily_ATPase_V0/A0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	98	0	0	111	35	23.97	-	-	-	T	87153720	G	T	87153720	4	4	856	1	0	0	0	0	0	1	0	0	1178	1291	45	2	537	2	ATP6V0D2	8	87153720	Nonsense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	19606878	87153720	59210302	34	70854										
PTK2	0	genome.wustl.edu	37	chr8	141756921	141756921	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctctgtgatgactccaatcaGcttcacaatatgaggatggt	9	9	3	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	141756921	141756921	G	C	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.1456	p.L486V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	58	0	0	55	10	15.38	-	-	-	C	141756921	G	C	141756921	3	2	856	1	0	0	0	0	1	0	0	0	12843	962	34	4	1762	4	PTK2	8	141756921	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	54603201	141756921	4607101	35	70855										
BNC2	0	genome.wustl.edu	37	chr9	16727800	16727800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aagaaagtaacttacctgttGggacattctgaataagaggt	10	5	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	16727800	16727800	G	C	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.325	p.Q109E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	120	0	0	73	13	15.12	-	-	-	C	16727800	G	C	16727800	3	2	856	1	0	0	0	0	1	0	0	0	1480	1357	47	4	2994	4	BNC2	9	16727800	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		16727800	124485631	36	70856										
GRHPR	0	genome.wustl.edu	37	chr9	37422820	37422820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agggtagggtcgcgctcgccCgggcggcagagtaagagcct	18	11	0	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	37422820	37422820	C	T	SNP	GRHPR	ENST00000377824	human	ensembl	69_37n	1	known	missense	c.73	p.R25W	0.151	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	GRHPR	HGNC	ENSG00000137106	19	0	0	14	8	36.36	-	-	-	T	37422820	C	T	37422820	3	4	856	1	0	0	0	0	1	0	0	0	6817	643	23	1	75	1	GRHPR	9	37422820	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	20695020	37422820	103790611	37	70857										
RC3H2	0	genome.wustl.edu	37	chr9	125652667	125652667	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aactgctgagggttctggtgCtgtaatatcagttctgttac	11	7	3	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	125652667	125652667	C	T	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	silent	c.507	p.Q169	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	75	0	0	41	39	48.75	-	-	-	T	125652667	C	T	125652667	2	4	856	1	0	0	0	0	0	0	0	1	13250	796	28	4		4	RC3H2	9	125652667	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	88229847	125652667	15560764	38	70858										
CEL	0	genome.wustl.edu	37	chr9	135946015	135946015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gacagtctctaaggccatgaTcgcctactggaccaactttg	9	12	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	135946015	135946015	T	C	SNP	CEL	ENST00000372080	human	ensembl	69_37n	1	known	missense	c.1463	p.I488T	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	54	0	0	38	6	13.64	-	-	-	C	135946015	T	C	135946015	3	2	856	1	0	0	0	0	1	0	0	0	3238	1435	50	5	1501	5	CEL	9	135946015	Missense_Mutation	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	10293348	135946015	5267416	39	70859										
OGDHL	0	genome.wustl.edu	37	chr10	50964886	50964886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ccaatttgctggtcttggtcCgacttgagactgcagacctg	11	11	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	50964886	50964886	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	69_37n	-1	known	missense	c.311	p.R104Q	0.488	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444	54	0	0	64	11	14.67	-	-	-	T	50964886	C	T	50964886	3	4	856	1	0	0	0	0	1	0	0	0	10913	652	23	1	2805	1	OGDHL	10	50964886	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		50964886	84569861	40	70860										
NOC3L	0	genome.wustl.edu	37	chr10	96101465	96101465	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agtatgaagaactactaacaGatcatcaaaaaattccacat	4	8	2	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	96101465	96101465	G	A	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	silent	c.1609	p.L537	0.996	superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	57	0	0	35	24	40.68	-	-	-	A	96101465	G	A	96101465	2	1	856	1	0	0	0	0	0	0	0	1	10586	933	33	2		2	NOC3L	10	96101465	Silent	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	45136579	96101465	39433282	41	70861										
FAM45A	0	genome.wustl.edu	37	chr10	120871384	120871384	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	actcatttttctattgtcctGaccgccaaagattttaaccc	4	12	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	120871384	120871384	G	C	SNP	FAM45A	ENST00000361432	human	ensembl	69_37n	1	known	silent	c.276	p.L92	1.000	NULL	pfam_Secretory_pathway_prot_Avl9	-	no_errors	FAM45A	HGNC	ENSG00000119979	140	0	0	86	25	22.32	-	-	-	C	120871384	G	C	120871384	2	2	856	1	0	0	0	0	0	0	0	1	5610	1277	45	2		2	FAM45A	10	120871384	Silent	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	24769919	120871384	14663363	42	70862										
CD163L1	0	genome.wustl.edu	37	chr12	7531857	7531857	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	acttttccagcacacctgctGcttccacccacaagcctcag	5	18	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	7531857	7531857	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	silent	c.2088	p.S696	0.675	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	71	0	0	44	16	26.67	-	-	-	A	7531857	G	A	7531857	2	1	856	1	0	0	0	0	0	0	0	1	2997	1310	46	4		4	CD163L1	12	7531857	Silent	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		7531857	126320038	43	70863										
DPPA3	0	genome.wustl.edu	37	chr12	7867843	7867843	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aacttgactatcaacgctagTagcgaatctgtttcccctct	6	12	3	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	7867843	7867843	T	C	SNP	DPPA3	ENST00000345088	human	ensembl	69_37n	1	known	silent	c.147	p.S49	0.000	NULL	NULL	-	no_errors	DPPA3	HGNC	ENSG00000187569	65	0	0	47	6	11.32	-	-	-	C	7867843	T	C	7867843	2	2	856	1	0	0	0	0	0	0	0	1	4770	1635	57	5		5	DPPA3	12	7867843	Silent	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	335986	7867843	125984052	44	70864										
RFX4	0	genome.wustl.edu	37	chr12	107002600	107002600	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tggattgaaagatgtctcaaCgaaagtgaaaacaaacgtta	9	5	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	107002600	107002600	C	G	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	1	known	missense	c.96	p.N32K	0.983	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	40	0	0	34	5	12.82	-	-	-	G	107002600	C	G	107002600	3	3	856	1	0	0	0	0	1	0	0	0	13348	535	19	3	149	3	RFX4	12	107002600	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	99134757	107002600	26849295	45	70865										
GOLGA3	0	genome.wustl.edu	37	chr12	133349744	133349744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctgactgtgtctctgtgggtCgccgcgtgggccggcgtgac	17	12	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	133349744	133349744	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.4444	p.D1482N	0.011	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	31	0	0	30	10	25	-	-	-	T	133349744	C	T	133349744	3	4	856	1	0	0	0	0	1	0	0	0	6606	884	31	1	56	1	GOLGA3	12	133349744	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	26347144	133349744	502151	46	70866										
FRY	0	genome.wustl.edu	37	chr13	32698787	32698787	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	taatacatgatgttattaacTtggctttcaagcactttaaa	5	6	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	32698787	32698787	T	C	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	silent	c.604	p.L202	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	50	0	0	46	9	16.36	-	-	-	C	32698787	T	C	32698787	2	2	856	1	0	0	0	0	0	0	0	1	6112	1606	56	5		5	FRY	13	32698787	Silent	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09		32698787	82471091	47	70867										
PCDH20	0	genome.wustl.edu	37	chr13	61986915	61986918	+	Frame_Shift_Del	DEL	AACC	AACC	-													0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ggttccagttctttcagataAaccacaccatctatctcgtt							TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AACC	AACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	61986915	61986918	AACC	-	DEL	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	frame_shift_del	c.1317_1314	p.V439fs	0.963:0.998:0.990:0.068	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	59	0	0	31	6	16.22	-	-	-	-	61986918	AACC	-	61986915	7	5	856	1	0	1	0	1	0	0	0	0	11588	1	1	0	1542	0	PCDH20	13	61986915	Frame_Shift_Del	DEL	AACC	TCGA-E9-A1RH-01A-21D-A167-09	29288128	61986915	53182963	48	70868										
DZIP1	0	genome.wustl.edu	37	chr13	96293774	96293774	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aagtactcgatggtgaactgCgccagacggatgagcttcag	13	9	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	96293774	96293774	C	A	SNP	DZIP1	ENST00000347108	human	ensembl	69_37n	-1	known	silent	c.372	p.A124	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874	42	0	0	16	11	40.74	-	-	-	A	96293774	C	A	96293774	2	1	856	1	0	0	0	0	0	0	0	1	4898	755	27	3		3	DZIP1	13	96293774	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	34306859	96293774	18876104	49	70869										
LRRC16B	0	genome.wustl.edu	37	chr14	24534925	24534925	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tgcccttcccgggttggaaaGagccaagggttggagcttcg	15	10	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	24534925	24534925	G	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	1	known	missense	c.3491	p.R1164I	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	61	0	0	49	13	20.97	-	-	-	T	24534925	G	T	24534925	3	4	856	1	0	0	0	0	1	0	0	0	9038	942	33	2	3625	2	LRRC16B	14	24534925	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		24534925	82814615	50	70870										
GPHN	0	genome.wustl.edu	37	chr14	67147848	67147848	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gtgatagttgcttcaggaatCttgcagaagaccgcagtggg	14	7	2	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	67147848	67147848	C	A	SNP	GPHN	ENST00000478722	human	ensembl	69_37n	1	known	missense	c.88	p.L30I	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	pfam_Mopterin-bd,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723	53	0	0	36	8	18.18	-	-	-	A	67147848	C	A	67147848	3	1	856	1	0	0	0	0	1	0	0	0	6660	913	32	2	94	2	GPHN	14	67147848	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	42612923	67147848	40201692	51	70871										
SLC10A1	0	genome.wustl.edu	37	chr14	70252848	70252848	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gcatgtattgtggccgtttgGatttgaggacgatccctatg	13	7	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	70252848	70252848	G	T	SNP	SLC10A1	ENST00000216540	human	ensembl	69_37n	-1	known	missense	c.533	p.S178Y	0.977	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A1	HGNC	ENSG00000100652	113	1	0.88	97	22	18.33	-	-	-	T	70252848	G	T	70252848	3	4	856	1	0	0	0	0	1	0	0	0	14462	1174	41	2	532	2	SLC10A1	14	70252848	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	3105000	70252848	37096692	52	70872										
ADAM20	0	genome.wustl.edu	37	chr14	70989500	70989500	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gtccttgcagtatgggggtgCccattcatggttgcagtgac	14	9	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	70989500	70989500	C	A	SNP	ADAM20	ENST00000256389	human	ensembl	69_37n	-1	known	missense	c.2125	p.A709S	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	209	0	0	140	27	16.17	-	-	-	A	70989500	C	A	70989500	3	1	856	1	0	0	0	0	1	0	0	0	242	739	26	4	209	4	ADAM20	14	70989500	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	736652	70989500	36360040	53	70873										
HERC2	0	genome.wustl.edu	37	chr15	28479350	28479350	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ccctggggagctgcagtggtCctcgtctttctcctcgttgt	12	13	2	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	28479350	28479350	C	G	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.4084	p.D1362H	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	19	0	0	13	12	46.15	-	-	-	G	28479350	C	G	28479350	3	3	856	1	0	0	0	0	1	0	0	0	7109	855	30	2	10688	2	HERC2	15	28479350	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		28479350	74052042	54	70874										
HERC1	0	genome.wustl.edu	37	chr15	64067208	64067208	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctttcatttgctaatgataaTggtggcaaagagctcacaac	8	8	2	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	64067208	64067208	T	C	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.615	p.P205	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	39	0	0	22	14	38.89	-	-	-	C	64067208	T	C	64067208	2	2	856	1	0	0	0	0	0	0	0	1	7108	1451	51	5		5	HERC1	15	64067208	Silent	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	35587858	64067208	38464184	55	70875										
IGDCC4	0	genome.wustl.edu	37	chr15	65689327	65689327	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctgtggagatgggcttcccgTctggggaaggagagggagac	19	7	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	65689327	65689327	T	A	SNP	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	missense	c.842	p.D281V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	32	0	0	20	5	20	-	-	-	A	65689327	T	A	65689327	3	1	856	1	0	0	0	0	1	0	0	0	7623	1681	58	5	2970	5	IGDCC4	15	65689327	Missense_Mutation	SNP	T	TCGA-E9-A1RH-01A-21D-A167-09	1622119	65689327	36842065	56	70876										
CASKIN1	0	genome.wustl.edu	37	chr16	2236791	2236791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tccggttgtcatggatgcagCccttccaccggccatccgga	11	15	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	16	2236791	2236791	C	G	SNP	CASKIN1	ENST00000343516	human	ensembl	69_37n	-1	known	missense	c.965	p.G322A	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971	30	0	0	17	9	34.62	-	-	-	G	2236791	C	G	2236791	3	3	856	1	0	0	0	0	1	0	0	0	2691	739	26	4	3374	4	CASKIN1	16	2236791	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		2236791	88117962	57	70877										
VPS53	0	genome.wustl.edu	37	chr17	556562	556562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctgccggatctgcggaatccCcatatacttgtggaagtgct	11	11	1	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	556562	556562	C	T	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	missense	c.577	p.G193R	1.000	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	93	0	0	63	11	14.86	-	-	-	T	556562	C	T	556562	3	4	856	1	0	0	0	0	1	0	0	0	17312	623	22	4	2000	4	VPS53	17	556562	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		556562	80638648	58	70878										
GABARAP	0	genome.wustl.edu	37	chr17	7144763	7144763	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tgaattcgcttccggatcaaGaagtagaactgaccaactgc	9	10	1	4			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	7144763	7144763	G	A	SNP	GABARAP	ENST00000570856	human	ensembl	69_37n	-1	known	missense	c.107	p.S36F	1.000	NULL	NULL	-	no_errors	GABARAP	HGNC	ENSG00000170296	48	0	0	39	15	27.78	-	-	-	A	7144763	G	A	7144763	3	1	856	1	0	0	0	0	1	0	0	0	6201	933	33	2	175	2	GABARAP	17	7144763	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	6588201	7144763	74050447	59	70879										
TP53	0	genome.wustl.edu	37	chr17	7574012	7574012	+	Frame_Shift_Del	DEL	C	C	-													0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	attcagctctcggaacatctCgaagcgctcacgcccacgga							TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	7574012	7574012	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.1015	p.E339fs	0.996	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	26	0	0	12	10	43.48	-	-	-	-	7574012	C	-	7574012	7	5	856	1	0	1	0	1	0	0	0	0	16477	893	31	0	174	0	TP53	17	7574012	Frame_Shift_Del	DEL	C	TCGA-E9-A1RH-01A-21D-A167-09	429249	7574012	73621198	60	70880										
ULK2	0	genome.wustl.edu	37	chr17	19699015	19699015	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gagtctttccttgttgatctGataacttcccggtactgaca	8	10	2	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	19699015	19699015	G	A	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	missense	c.2021	p.S674L	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	131	0	0	72	20	21.74	-	-	-	A	19699015	G	A	19699015	3	1	856	1	0	0	0	0	1	0	0	0	17073	1294	45	2	1121	2	ULK2	17	19699015	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	12125003	19699015	61496195	61	70881										
MAPT	0	genome.wustl.edu	37	chr17	44087762	44087762	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	atcaaacacgtcccgggaggCggcagtgtgagtaccttcac	12	12	2	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	44087762	44087762	C	T	SNP	MAPT	ENST00000344290	human	ensembl	69_37n	1	known	silent	c.1914	p.G638	0.998	pfam_Tau/MAP_tubulin-bd_rpt	pfam_Tau/MAP_tubulin-bd_rpt,prints_Tau_protein	-	no_errors	MAPT	HGNC	ENSG00000186868	35	0	0	19	13	40.62	-	-	-	T	44087762	C	T	44087762	2	4	856	1	0	0	0	0	0	0	0	1	9368	755	27	1		1	MAPT	17	44087762	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	24388747	44087762	37107448	62	70882										
RECQL5	0	genome.wustl.edu	37	chr17	73657754	73657754	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ccagctgttcacaagcctctCtagtcctgcagtacacaatg	7	14	2	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	73657754	73657754	C	G	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.806	p.R269T	1.000	pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	28	0	0	41	16	28.07	-	-	-	G	73657754	C	G	73657754	3	3	856	1	0	0	0	0	1	0	0	0	13286	913	32	2	2320	2	RECQL5	17	73657754	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	29569992	73657754	7537456	63	70883										
FHOD3	0	genome.wustl.edu	37	chr18	34298167	34298167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	caaggtcccagaaacagcgcCggtgcagccgaagacagagt	13	12	0	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	18	34298167	34298167	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	69_37n	1	known	missense	c.2381	p.P794L	0.001	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD3	HGNC	ENSG00000134775	41	0	0	15	10	40	-	-	-	T	34298167	C	T	34298167	3	4	856	1	0	0	0	0	1	0	0	0	5929	652	23	1	2443	1	FHOD3	18	34298167	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		34298167	43779081	64	70884										
SLC1A6	0	genome.wustl.edu	37	chr19	15073025	15073025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ctgcagggtacccaaggcccGagtgacattttccaggaagc	12	12	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	15073025	15073025	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.724	p.R242W	0.076	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	55	0	0	73	11	12.94	-	-	-	A	15073025	G	A	15073025	3	1	856	1	0	0	0	0	1	0	0	0	14525	1057	37	1	990	1	SLC1A6	19	15073025	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		15073025	44055958	65	70885										
FXYD3	0	genome.wustl.edu	37	chr19	35614360	35614360	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cgcaggctcagcccaaagctGatgaggacagaccagctgaa	12	12	1	4			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	35614360	35614360	G	C	SNP	FXYD3	ENST00000435734	human	ensembl	69_37n	1	known	nonstop	c.434	p.*145S	0.971	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD3	HGNC	ENSG00000089356	90	0	0	73	39	34.82	-	-	-	C	35614360	G	C	35614360	4	2	856	1	0	0	0	0	0	0	0	0	6168	1285	45	2	635	2	FXYD3	19	35614360	Nonstop_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	20541335	35614360	23514623	66	70886										
ZNF577	0	genome.wustl.edu	37	chr19	52381691	52381691	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aacattacttccttgtacaaGaccttctgagactggtccaa	6	11	1	2			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	52381691	52381691	G	T	SNP	ZNF577	ENST00000301399	human	ensembl	69_37n	-1	known	silent	c.138	p.V46	0.908	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	74	0	0	106	14	11.67	-	-	-	T	52381691	G	T	52381691	2	4	856	1	0	0	0	0	0	0	0	1	18105	929	33	2		2	ZNF577	19	52381691	Silent	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	16767331	52381691	6747292	67	70887										
ZNF551	0	genome.wustl.edu	37	chr19	58199270	58199270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gtggcaaatcttttagacagCgctctggcctcattcagcac	9	12	4	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	58199270	58199270	C	T	SNP	ZNF551	ENST00000356715	human	ensembl	69_37n	1	known	missense	c.1627	p.R543C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519	55	0	0	20	40	66.67	-	-	-	T	58199270	C	T	58199270	3	4	856	1	0	0	0	0	1	0	0	0	18079	768	27	1	1589	1	ZNF551	19	58199270	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	5817579	58199270	929713	68	70888										
CD93	0	genome.wustl.edu	37	chr20	23065078	23065078	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	accacggtgcctaggatgtaGaataaaagcagcttttgccc	10	10	0	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	20	23065078	23065078	G	C	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	missense	c.1752	p.F584L	0.976	superfamily_MFS_dom_general_subst_transpt	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	91	0	0	54	8	12.9	-	-	-	C	23065078	G	C	23065078	3	2	856	1	0	0	0	0	1	0	0	0	3076	933	33	2	214	2	CD93	20	23065078	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		23065078	39960442	69	70889										
LSM14B	0	genome.wustl.edu	37	chr20	60706418	60706418	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	gcttctttttgtagatgacaAggctgagaagggggaagaga	15	4	1	4			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	20	60706418	60706418	A	T	SNP	LSM14B	ENST00000253001	human	ensembl	69_37n	1	known	missense	c.842	p.K281M	0.922	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657	50	0	0	54	7	11.48	-	-	-	T	60706418	A	T	60706418	3	4	856	1	0	0	0	0	1	0	0	0	9121	72	3	5	868	5	LSM14B	20	60706418	Missense_Mutation	SNP	A	TCGA-E9-A1RH-01A-21D-A167-09	37641340	60706418	2319102	70	70890										
DGCR14	0	genome.wustl.edu	37	chr22	19121847	19121847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	ggggtctgcagcccactggcCggggtcttgaggtgggtgga	20	9	2	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	22	19121847	19121847	C	T	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	silent	c.1293	p.P431	0.021	NULL	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	132	0	0	115	15	11.54	-	-	-	T	19121847	C	T	19121847	2	4	856	1	0	0	0	0	0	0	0	1	4496	639	23	1		1	DGCR14	22	19121847	Silent	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09		19121847	32182719	71	70891										
APOL3	0	genome.wustl.edu	37	chr22	36541561	36541561	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	cacgaatctcttccaggcttCattgttagtcagcaggattt	8	10	3	0			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	22	36541561	36541561	C	T	SNP	APOL3	ENST00000349314	human	ensembl	69_37n	-1	known	missense	c.310	p.E104K	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL3	HGNC	ENSG00000128284	67	0	0	43	7	14	-	-	-	T	36541561	C	T	36541561	3	4	856	1	0	0	0	0	1	0	0	0	809	835	29	2	906	2	APOL3	22	36541561	Missense_Mutation	SNP	C	TCGA-E9-A1RH-01A-21D-A167-09	17419714	36541561	14763005	72	70892										
MAP7D2	0	genome.wustl.edu	37	chrX	20069029	20069029	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	tgtcaacagtcgcgaaacaaGaatggcttccattggactaa	9	9	1	1			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	20069029	20069029	G	C	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	missense	c.631	p.L211V	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	66	0	0	41	34	45.33	-	-	-	C	20069029	G	C	20069029	3	2	856	1	0	0	0	0	1	0	0	0	9339	942	33	2	1734	2	MAP7D2	23	20069029	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09		20069029	135201531	73	70893										
RBM10	0	genome.wustl.edu	37	chrX	47045972	47045972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	agacactgcacaagacaatgGtgacccgcttcaacgaggcc	10	13	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	47045972	47045972	G	A	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	missense	c.2767	p.V923M	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	24	0	0	26	5	16.13	-	-	-	A	47045972	G	A	47045972	3	1	856	1	0	0	0	0	1	0	0	0	13194	1261	44	4	2857	4	RBM10	23	47045972	Missense_Mutation	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	26976943	47045972	108224588	74	70894										
KDM5C	0	genome.wustl.edu	37	chrX	53247464	53247464	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	12	0.076843832803023	1.92607260726073	2.77798933739528	1.57998143564356	0.715987167706469	1	0	aaacctgttcttactttgctGagactgtagaggtccaagat	9	8	1	3			TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	53247464	53247464	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.345	p.L115	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	74	0	0	50	8	13.79	-	-	-	A	53247464	G	A	53247464	2	1	856	1	0	0	0	0	0	0	0	1	8188	1277	45	2		2	KDM5C	23	53247464	Silent	SNP	G	TCGA-E9-A1RH-01A-21D-A167-09	6201492	53247464	102023096	75	70895										
ZBTB40	0	genome.wustl.edu	37	chr1	22835660	22835660	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	cagttgatcttggaggccatCcaacagaagattgagtacaa	10	8	1	4			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	1	22835660	22835660	C	A	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	silent	c.1767	p.I589	0.840	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	60	0	0	48	21	30.43	-	-	-	A	22835660	C	A	22835660	2	1	857	1	0	0	0	0	0	0	0	1	17638	845	30	2		2	ZBTB40	1	22835660	Silent	SNP	C	TCGA-E9-A1RI-01A-11D-A167-09		22835660	226414961	1	70896										
FLG	0	genome.wustl.edu	37	chr1	152277093	152277093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	ccctcttgggacgctgagtgCctggagctgtctcgtgcctg	14	13	2	1			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	1	152277093	152277093	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.10269	p.R3423	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	155	0	0	138	44	24.18	-	-	-	T	152277093	C	T	152277093	2	4	857	1	0	0	0	0	0	0	0	1	5968	738	26	4		4	FLG	1	152277093	Silent	SNP	C	TCGA-E9-A1RI-01A-11D-A167-09	129441433	152277093	96973528	2	70897										
GPR15	0	genome.wustl.edu	37	chr3	98251078	98251078	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	aaacccggcagccgaagactGatcgacatctttatcatcaa	7	12	3	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	3	98251078	98251078	G	A	SNP	GPR15	ENST00000284311	human	ensembl	69_37n	1	known	silent	c.201	p.L67	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165	46	0	0	46	11	19.3	-	-	-	A	98251078	G	A	98251078	2	1	857	1	0	0	0	0	0	0	0	1	6705	1277	45	2		2	GPR15	3	98251078	Silent	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		98251078	99771352	3	70898										
CSTA	0	genome.wustl.edu	37	chr3	122060396	122060396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	gttgacaaaaacaaggatgaCgagctgacgggcttttagca	12	7	0	3			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	3	122060396	122060396	C	T	SNP	CSTA	ENST00000264474	human	ensembl	69_37n	1	known	silent	c.279	p.D93	0.081	smart_Prot_inh_cystat,prints_Prot_inh_stefinA	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Prot_inh_stefinA	-	no_errors	CSTA	HGNC	ENSG00000121552	79	0	0	61	15	19.74	-	-	-	T	122060396	C	T	122060396	2	4	857	1	0	0	0	0	0	0	0	1	4013	535	19	1		1	CSTA	3	122060396	Silent	SNP	C	TCGA-E9-A1RI-01A-11D-A167-09	23809318	122060396	75962034	4	70899										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	39	0	0	46	16	25.81	-	-	-	T	178952085	A	T	178952085	3	4	857	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A1RI-01A-11D-A167-09	56891689	178952085	19070345	5	70900										
CTAGE9	0	genome.wustl.edu	37	chr6	132030507	132030507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	tcctccccctggaagcacagGtgagagtctgagtggatcct	12	12	1	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	6	132030507	132030507	G	A	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	missense	c.1651	p.P551S	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	24	0	0	11	13	54.17	-	-	-	A	132030507	G	A	132030507	3	1	857	1	0	0	0	0	1	0	0	0	4028	1261	44	4	686	4	CTAGE9	6	132030507	Missense_Mutation	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		132030507	39084560	6	70901										
TNRC18	0	genome.wustl.edu	37	chr7	5352597	5352599	+	In_Frame_Del	DEL	GAG	GAG	-													0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	aggaggaagacgaagaggaaGaggaggaggaggaagaggag							TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	7	5352597	5352599	GAG	-	DEL	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	in_frame_del	c.7925_7923	p.S2645in_frame_del	0.984:0.989:0.972	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	8	0	0	6	3	33.33	-	-	-	-	5352599	GAG	-	5352597	7	5	857	1	0	1	0	1	0	0	0	0	16434	942	33	0	997	0	TNRC18	7	5352597	In_Frame_Del	DEL	GAG	TCGA-E9-A1RI-01A-11D-A167-09		5352597	153786066	7	70902										
RBM28	0	genome.wustl.edu	37	chr7	127963629	127963629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	tcacaccctctgcagccttcGtcccagcacgaatcactgca	6	18	3	0			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	7	127963629	127963629	G	A	SNP	RBM28	ENST00000223073	human	ensembl	69_37n	-1	known	missense	c.1355	p.T452M	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344	84	0	0	69	29	29.59	-	-	-	A	127963629	G	A	127963629	3	1	857	1	0	0	0	0	1	0	0	0	13211	1145	40	1	952	1	RBM28	7	127963629	Missense_Mutation	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09	122611032	127963629	31175034	8	70903										
CNTLN	0	genome.wustl.edu	37	chr9	17466011	17466011	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	actgaagaatgttccaacaaGaaggtatcaattgattcact	7	7	2	4			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	9	17466011	17466011	G	T	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	1	known	missense	c.3564	p.K1188N	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	34	0	0	41	8	16.33	-	-	-	T	17466011	G	T	17466011	3	4	857	1	0	0	0	0	1	0	0	0	3669	933	33	2	3680	2	CNTLN	9	17466011	Missense_Mutation	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		17466011	123747420	9	70904										
ZMYM2	0	genome.wustl.edu	37	chr13	20625633	20625633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	aagagcgagttcagtggcgtGgggaaatgaaacatttctgt	14	5	2	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	13	20625633	20625633	G	A	SNP	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	missense	c.2353	p.G785R	1.000	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	72	0	0	74	12	13.95	-	-	-	A	20625633	G	A	20625633	3	1	857	1	0	0	0	0	1	0	0	0	17796	1348	47	4	2395	4	ZMYM2	13	20625633	Missense_Mutation	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		20625633	94544245	10	70905										
ACSF3	0	genome.wustl.edu	37	chr16	89178629	89178629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	cgcacgcccaggatttcttgCgtgcagtttgtgaagaaaaa	11	9	1	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	16	89178629	89178629	C	T	SNP	ACSF3	ENST00000317447	human	ensembl	69_37n	1	known	missense	c.952	p.R318C	0.992	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	51	0	0	19	10	34.48	-	-	-	T	89178629	C	T	89178629	3	4	857	1	0	0	0	0	1	0	0	0	176	768	27	1	962	1	ACSF3	16	89178629	Missense_Mutation	SNP	C	TCGA-E9-A1RI-01A-11D-A167-09		89178629	1176124	11	70906										
TMEM97	0	genome.wustl.edu	37	chr17	26653645	26653645	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	ccgatactctccacatttctGtttgaggatttctccaaagc	6	12	3	1			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	17	26653645	26653645	G	C	SNP	TMEM97	ENST00000226230	human	ensembl	69_37n	1	known	silent	c.357	p.L119	0.448	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084	75	0	0	72	48	40	-	-	-	C	26653645	G	C	26653645	2	2	857	1	0	0	0	0	0	0	0	1	16319	1364	48	4		4	TMEM97	17	26653645	Silent	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		26653645	54541565	12	70907										
TIMM44	0	genome.wustl.edu	37	chr19	7999109	7999109	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	cggccgagatcacttttactGacttcgtgaaggctctactg	10	11	2	3			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	19	7999109	7999109	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	69_37n	-1	known	silent	c.408	p.V136	0.995	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	42	0	0	21	5	19.23	-	-	-	A	7999109	G	A	7999109	2	1	857	1	0	0	0	0	0	0	0	1	16007	1277	45	2		2	TIMM44	19	7999109	Silent	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		7999109	51129874	13	70908										
PRODH	0	genome.wustl.edu	37	chr22	18909913	18909914	+	Frame_Shift_Ins	INS	-	-	T													0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	gatgcccaactttgcgacacINStttccttgagaagtgagaag							TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	22	18909913	18909914	-	T	INS	PRODH	ENST00000357068	human	ensembl	69_37n	-1	known	frame_shift_ins	c.854_853	p.S285fs	0.972:0.997	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH	HGNC	ENSG00000100033	27	0	0	25	8	24.24	-	-	-	T	18909914	-	T	18909913	7	5	857	1	0	1	1	0	0	0	0	0	12629	565	20	0	980	0	PRODH	22	18909913	Frame_Shift_Ins	INS	-	TCGA-E9-A1RI-01A-11D-A167-09		18909913	32394653	14	70909										
KIAA2022	0	genome.wustl.edu	37	chrX	73961191	73961191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.133333333333333	2	0.861966678628709	1.16444444444444	0	1.31	0.4	0.991179622791967	0	ggtggggacatctctgaaagGgaagagtggcggaatttgtc	17	5	1	2			TCGA-E9-A1RI-01A-11D-A167-09	TCGA-E9-A1RI-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	661c0074-dac9-44c6-bebc-202cfb9fb735	3e00fb1f-9467-4e28-ac73-2b6a7f7807eb	X	73961191	73961191	G	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.3201	p.S1067	0.869	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	54	0	0	43	9	17.31	-	-	-	T	73961191	G	T	73961191	2	4	857	1	0	0	0	0	0	0	0	1	8321	1219	43	4		4	KIAA2022	23	73961191	Silent	SNP	G	TCGA-E9-A1RI-01A-11D-A167-09		73961191	81309369	15	70910										
SPOPL	0	genome.wustl.edu	37	chr2	139316712	139316712	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gggaaaacacaagatttacaGactgcagttttttcgtgaga	10	6	0	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	139316712	139316712	G	T	SNP	SPOPL	ENST00000280098	human	ensembl	69_37n	1	known	missense	c.601	p.D201Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228	106	0	0	49	9	15.52	-	-	-	T	139316712	G	T	139316712	3	4	858	1	0	0	0	0	1	0	0	0	15176	942	33	2	619	2	SPOPL	2	139316712	Missense_Mutation	SNP	G	TCGA-E9-A226-01A-21D-A159-09		139316712	103882661	1	70911										
WIPF1	0	genome.wustl.edu	37	chr2	175446104	175446104	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tttcttccctttgctgatatCagaaaggagagcatttctcc	7	10	3	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	175446104	175446104	C	G	SNP	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	missense	c.115	p.D39H	1.000	smart_WH2_dom,pfscan_WH2_dom	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	171	0	0	117	18	13.33	-	-	-	G	175446104	C	G	175446104	3	3	858	1	0	0	0	0	1	0	0	0	17464	826	29	2	1420	2	WIPF1	2	175446104	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	36129392	175446104	67753269	2	70912										
TTN	0	genome.wustl.edu	37	chr2	179640219	179640219	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tcttcgggccagtaccagtaGatccggtcagaccgttcaat	10	12	3	2			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	179640219	179640219	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.6372	p.I2124	0.997	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	69	0	0	43	10	18.87	-	-	-	A	179640219	G	A	179640219	2	1	858	1	0	0	0	0	0	0	0	1	16832	932	33	2		2	TTN	2	179640219	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09	4194115	179640219	63559154	3	70913										
DUSP19	0	genome.wustl.edu	37	chr2	183943684	183943684	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gtactcccttaaccaggaaaTtaaagcattctcccggaata	6	11	1	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	183943684	183943684	T	C	SNP	DUSP19	ENST00000354221	human	ensembl	69_37n	1	known	missense	c.23	p.I8T	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP19	HGNC	ENSG00000162999	78	0	0	34	13	27.66	-	-	-	C	183943684	T	C	183943684	3	2	858	1	0	0	0	0	1	0	0	0	4853	1493	52	5	25	5	DUSP19	2	183943684	Missense_Mutation	SNP	T	TCGA-E9-A226-01A-21D-A159-09	4303465	183943684	59255689	4	70914										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0	15	51	77.27	-	-	-	A	178921553	T	A	178921553	3	1	858	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-E9-A226-01A-21D-A159-09		178921553	19100877	5	70915										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725783	140725783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gtcacgcctgctgcaggcttCgggaggcggcttggcgagta	17	11	1	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	5	140725783	140725783	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	missense	c.2183	p.S728L	0.067	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	109	0	0	58	29	33.33	-	-	-	T	140725783	C	T	140725783	3	4	858	1	0	0	0	0	1	0	0	0	11628	893	31	1	2185	1	PCDHGA3	5	140725783	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09		140725783	40189477	6	70916										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032071	26032071	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tgaagtcttgggcgatttctCgcaccaggcgctggaacggc	14	11	2	1			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	26032071	26032071	C	G	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.218	p.R73P	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	75	0	0	64	8	10.96	-	-	-	G	26032071	C	G	26032071	3	3	858	1	0	0	0	0	1	0	0	0	7207	884	31	3	196	3	HIST1H3B	6	26032071	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09		26032071	145082996	7	70917										
PLEKHG1	0	genome.wustl.edu	37	chr6	151152648	151152648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	aggacgaagccccttaccatCaggccactcccgatcatggt	9	15	2	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	151152648	151152648	C	G	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.2401	p.Q801E	0.126	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	86	0	0	48	10	17.24	-	-	-	G	151152648	C	G	151152648	3	3	858	1	0	0	0	0	1	0	0	0	12142	827	29	2	2455	2	PLEKHG1	6	151152648	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	125120577	151152648	19962419	8	70918										
LUC7L2	0	genome.wustl.edu	37	chr7	139097295	139097295	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	aatacatattttttttttttAggtcccgatcacacagcaag	5	8	1	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	139097295	139097295	A	G	SNP	LUC7L2	ENST00000541515	human	ensembl	69_37n	1	known	splice_site	c.978-2	e9-2	1.000	-	-	-	no_errors	LUC7L2	HGNC	ENSG00000146963	120	0	0	55	42	43.3	-	-	-	G	139097295	A	G	139097295	5	3	858	1	0	0	0	0	0	0	1	0	9149	434	15	5	808	5	LUC7L2	7	139097295	Splice_Site	SNP	A	TCGA-E9-A226-01A-21D-A159-09		139097295	20041368	9	70919										
MLL3	0	genome.wustl.edu	37	chr7	151859625	151859625	+	Frame_Shift_Del	DEL	T	T	-													0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ttgggcagtttgttctctaaTtctgtacatagctggcctgc							TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	151859625	151859625	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11037	p.E3679fs	0.004	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	125	0	0	91	20	17.86	-	-	-	-	151859625	T	-	151859625	7	5	858	1	0	1	0	1	0	0	0	0	9693	1490	52	0	3766	0	MLL3	7	151859625	Frame_Shift_Del	DEL	T	TCGA-E9-A226-01A-21D-A159-09	12762330	151859625	7279038	10	70920										
WDR60	0	genome.wustl.edu	37	chr7	158734770	158734770	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ggtgcaggacgacacatccaAcatctacatctgggacctcc	9	14	2	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	158734770	158734770	A	G	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	1	known	missense	c.2933	p.N978S	0.004	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	29	0	0	8	5	38.46	-	-	-	G	158734770	A	G	158734770	3	3	858	1	0	0	0	0	1	0	0	0	17408	43	2	5	3027	5	WDR60	7	158734770	Missense_Mutation	SNP	A	TCGA-E9-A226-01A-21D-A159-09	6875145	158734770	403893	11	70921										
TACC1	0	genome.wustl.edu	37	chr8	38693781	38693781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	agcgaatcagacaagacagcCgtgctcaccttaataagaga	9	10	2	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	38693781	38693781	C	T	SNP	TACC1	ENST00000521866	human	ensembl	69_37n	1	putative	missense	c.1088	p.P363L	0.223	pfam_TACC	pfam_TACC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TACC1	HGNC	ENSG00000147526	57	0	0	37	7	15.91	-	-	-	T	38693781	C	T	38693781	3	4	858	1	0	0	0	0	1	0	0	0	15593	639	23	1	1841	1	TACC1	8	38693781	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09		38693781	107670241	12	70922										
SGK3	0	genome.wustl.edu	37	chr8	67716646	67716646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ctgctatggccctgaagattCctgccaagagaatatttggt	10	9	0	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	67716646	67716646	C	A	SNP	SGK3	ENST00000262211	human	ensembl	69_37n	1	known	missense	c.217	p.P73T	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK3	HGNC	ENSG00000104205	77	0	0	32	4	11.11	-	-	-	A	67716646	C	A	67716646	3	1	858	1	0	0	0	0	1	0	0	0	14300	855	30	2	227	2	SGK3	8	67716646	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	29022865	67716646	78647376	13	70923										
ZFAT	0	genome.wustl.edu	37	chr8	135614282	135614282	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gcctgcggggaggccaggtgCacagctggggcaggcatttc	18	11	0	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	135614282	135614282	C	A	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	silent	c.1680	p.V560	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	29	0	0	7	7	50	-	-	-	A	135614282	C	A	135614282	2	1	858	1	0	0	0	0	0	0	0	1	17728	697	25	4		4	ZFAT	8	135614282	Silent	SNP	C	TCGA-E9-A226-01A-21D-A159-09	67897636	135614282	10749740	14	70924										
FAM154A	0	genome.wustl.edu	37	chr9	19032889	19032889	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ccgcaggagcacagttcacaGatgcacttcgtcttcatagg	10	12	3	1			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	19032889	19032889	G	A	SNP	FAM154A	ENST00000380534	human	ensembl	69_37n	-1	known	silent	c.18	p.I6	1.000	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	46	0	0	26	5	16.13	-	-	-	A	19032889	G	A	19032889	2	1	858	1	0	0	0	0	0	0	0	1	5503	932	33	2		2	FAM154A	9	19032889	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09		19032889	122180542	15	70925										
RMI1	0	genome.wustl.edu	37	chr9	86616967	86616967	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tagagagattttcacataatCctaatactacgaataacttt	4	7	1	2			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	86616967	86616967	C	A	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	1	known	missense	c.1066	p.P356T	0.004	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	57	0	0	33	4	10.81	-	-	-	A	86616967	C	A	86616967	3	1	858	1	0	0	0	0	1	0	0	0	13481	855	30	2	1068	2	RMI1	9	86616967	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	67584078	86616967	54596464	16	70926										
LRRTM3	0	genome.wustl.edu	37	chr10	68857462	68857462	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ttgaaacgaatgcacaggaaGatacgatggaaacacaccta	9	8	0	2			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	10	68857462	68857462	G	C	SNP	LRRTM3	ENST00000361320	human	ensembl	69_37n	1	known	missense	c.1654	p.D552H	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	80	0	0	51	7	12.07	-	-	-	C	68857462	G	C	68857462	3	2	858	1	0	0	0	0	1	0	0	0	9107	942	33	2	1664	2	LRRTM3	10	68857462	Missense_Mutation	SNP	G	TCGA-E9-A226-01A-21D-A159-09		68857462	66677285	17	70927										
CEP57	0	genome.wustl.edu	37	chr11	95561001	95561002	+	Frame_Shift_Ins	INS	-	-	T													0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tgttcagcttgtcttgcatcINStaatgaagcaacacagtaaa							TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	95561001	95561002	-	T	INS	CEP57	ENST00000325542	human	ensembl	69_37n	1	known	frame_shift_ins	c.937_938	p.M314fs	1.000:0.997	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	86	0	0	38	22	36.67	-	-	-	T	95561002	-	T	95561001	7	5	858	1	0	1	1	0	0	0	0	0	3285	912	32	0	971	0	CEP57	11	95561001	Frame_Shift_Ins	INS	-	TCGA-E9-A226-01A-21D-A159-09		95561001	39445515	18	70928										
UBE4A	0	genome.wustl.edu	37	chr11	118255404	118255404	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ccgccgtcccatgtatcctaTcctaagatacatgtggggga	10	12	0	1			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	118255404	118255404	T	G	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	1	known	missense	c.2273	p.I758S	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	78	0	0	43	11	20.37	-	-	-	G	118255404	T	G	118255404	3	3	858	1	0	0	0	0	1	0	0	0	16979	1435	50	5	2323	5	UBE4A	11	118255404	Missense_Mutation	SNP	T	TCGA-E9-A226-01A-21D-A159-09	22694403	118255404	16751112	19	70929										
SLC37A2	0	genome.wustl.edu	37	chr11	124949049	124949049	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	tccgctccgttactacctctCagctggaatgctgctcagtg	9	14	2	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	124949049	124949049	C	T	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	missense	c.356	p.S119L	0.044	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	89	0	0	47	9	16.07	-	-	-	T	124949049	C	T	124949049	3	4	858	1	0	0	0	0	1	0	0	0	14687	838	29	2	374	2	SLC37A2	11	124949049	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	6693645	124949049	10057467	20	70930										
USP5	0	genome.wustl.edu	37	chr12	6972518	6972518	+	Frame_Shift_Del	DEL	C	C	-													0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	agacgaagactccttctgctCccctcacttctcctctccga							TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	6972518	6972518	C	-	DEL	USP5	ENST00000229268	human	ensembl	69_37n	1	known	frame_shift_del	c.1931	p.P645fs	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	100	0	0	83	13	13.54	-	-	-	-	6972518	C	-	6972518	7	5	858	1	0	1	0	1	0	0	0	0	17178	855	30	0	1989	0	USP5	12	6972518	Frame_Shift_Del	DEL	C	TCGA-E9-A226-01A-21D-A159-09		6972518	126879377	21	70931										
SLC17A8	0	genome.wustl.edu	37	chr12	100795586	100795586	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ggggcagtggttgccatgccCctggctggggtgttggtgca	19	9	0	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	100795586	100795586	C	A	SNP	SLC17A8	ENST00000323346	human	ensembl	69_37n	1	known	silent	c.708	p.P236	0.736	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	191	0	0	121	39	24.22	-	-	-	A	100795586	C	A	100795586	2	1	858	1	0	0	0	0	0	0	0	1	14512	610	22	4		4	SLC17A8	12	100795586	Silent	SNP	C	TCGA-E9-A226-01A-21D-A159-09	93823068	100795586	33056309	22	70932										
POLE2	0	genome.wustl.edu	37	chr14	50118020	50118020	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gccaaattgctgctaggaaaAcggacgcagtttctgcacat	10	10	1	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	14	50118020	50118020	A	T	SNP	POLE2	ENST00000216367	human	ensembl	69_37n	-1	known	silent	c.1287	p.R429	0.997	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479	71	0	0	79	63	44.37	-	-	-	T	50118020	A	T	50118020	2	4	858	1	0	0	0	0	0	0	0	1	12271	30	2	5		5	POLE2	14	50118020	Silent	SNP	A	TCGA-E9-A226-01A-21D-A159-09		50118020	57231520	23	70933										
IQGAP1	0	genome.wustl.edu	37	chr15	90969467	90969470	+	Frame_Shift_Del	DEL	AAAT	AAAT	-													0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	caaagtagtgtccctgaaaaAaatctatgatcgagaacaga							TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	AAAT	AAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	15	90969467	90969470	AAAT	-	DEL	IQGAP1	ENST00000268182	human	ensembl	69_37n	1	known	frame_shift_del	c.281_284	p.K94fs	1.000:1.000:1.000:1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	81	0	0	47	9	16.07	-	-	-	-	90969470	AAAT	-	90969467	7	5	858	1	0	1	0	1	0	0	0	0	7868	14	1	0	291	0	IQGAP1	15	90969467	Frame_Shift_Del	DEL	AAAT	TCGA-E9-A226-01A-21D-A159-09		90969467	11561925	24	70934										
LLGL2	0	genome.wustl.edu	37	chr17	73566549	73566549	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	cggagccgggtgtccagccgGaagcggcacccggctggccc	17	16	0	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	73566549	73566549	G	A	SNP	LLGL2	ENST00000392550	human	ensembl	69_37n	1	known	silent	c.1995	p.R665	0.925	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	23	0	0	14	5	25	-	-	-	A	73566549	G	A	73566549	2	1	858	1	0	0	0	0	0	0	0	1	8890	1161	41	2		2	LLGL2	17	73566549	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09		73566549	7628661	25	70935										
STAP2	0	genome.wustl.edu	37	chr19	4324465	4324465	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	cccttaccggctgtggggaaGagaggctgggctgaactgac	16	10	0	3			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	4324465	4324465	G	C	SNP	STAP2	ENST00000314714	human	ensembl	69_37n	-1	known	silent	c.1272	p.L424	0.000	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078	21	0	0	28	6	17.65	-	-	-	C	4324465	G	C	4324465	2	2	858	1	0	0	0	0	0	0	0	1	15344	929	33	2		2	STAP2	19	4324465	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09		4324465	54804518	26	70936										
KCNJ14	0	genome.wustl.edu	37	chr19	48967521	48967521	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	gatggaggcaccgatcgtatCttcctcgtgtcccccatcac	9	15	2	0			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	48967521	48967521	C	G	SNP	KCNJ14	ENST00000342291	human	ensembl	69_37n	1	known	missense	c.798	p.I266M	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ14	HGNC	ENSG00000182324	88	0	0	40	7	14.89	-	-	-	G	48967521	C	G	48967521	3	3	858	1	0	0	0	0	1	0	0	0	8102	903	32	2	804	2	KCNJ14	19	48967521	Missense_Mutation	SNP	C	TCGA-E9-A226-01A-21D-A159-09	44643056	48967521	10161462	27	70937										
NOSIP	0	genome.wustl.edu	37	chr19	50059664	50059664	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	atcagcttctccacgcattcGagggtgaccacagccccact	8	16	2	1			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	50059664	50059664	G	A	SNP	NOSIP	ENST00000339093	human	ensembl	69_37n	-1	known	silent	c.744	p.L248	0.003	pirsf_Nitric_oxide_synth-interacting	pirsf_Nitric_oxide_synth-interacting	-	no_errors	NOSIP	HGNC	ENSG00000142546	30	0	0	16	5	23.81	-	-	-	A	50059664	G	A	50059664	2	1	858	1	0	0	0	0	0	0	0	1	10617	1045	37	1		1	NOSIP	19	50059664	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09	1092143	50059664	9069319	28	70938										
ZNF347	0	genome.wustl.edu	37	chr19	53643755	53643755	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ccttgcaagttttgaagtttGactaaaggctttgccacact	8	9	0	2			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	53643755	53643755	G	A	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	nonsense	c.2329	p.Q777*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	126	0	0	63	9	12.5	-	-	-	A	53643755	G	A	53643755	4	1	858	1	0	0	0	0	0	1	0	0	17957	1299	45	2	197	2	ZNF347	19	53643755	Nonsense_Mutation	SNP	G	TCGA-E9-A226-01A-21D-A159-09	3584091	53643755	5485228	29	70939										
LAIR2	0	genome.wustl.edu	37	chr19	55019321	55019321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	actcagtaagtgaaggaaatGccgggctttatcgctgcctc	11	10	1	1			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	55019321	55019321	G	A	SNP	LAIR2	ENST00000301202	human	ensembl	69_37n	1	known	missense	c.286	p.A96T	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	LAIR2	HGNC	ENSG00000167618	86	0	0	33	11	25	-	-	-	A	55019321	G	A	55019321	3	1	858	1	0	0	0	0	1	0	0	0	8657	1319	46	4	296	4	LAIR2	19	55019321	Missense_Mutation	SNP	G	TCGA-E9-A226-01A-21D-A159-09	1375566	55019321	4109662	30	70940										
RRP1	0	genome.wustl.edu	37	chr21	45222219	45222219	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.32258064516129	10	2.60102011552612e-05	5.46401515151515	7.28535353535354	4.37121212121212	1	1	8	ctgcttgaagggaggcggcaGaagaagacgaagaagcagaa	16	6	0	6			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	21	45222219	45222219	G	A	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	1	known	silent	c.1074	p.Q358	0.000	NULL	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	73	0	0	36	6	14.29	-	-	-	A	45222219	G	A	45222219	2	1	858	1	0	0	0	0	0	0	0	1	13771	933	33	2		2	RRP1	21	45222219	Silent	SNP	G	TCGA-E9-A226-01A-21D-A159-09		45222219	2907676	31	70941										
CHST2	0	genome.wustl.edu	37	chr3	142840438	142840438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	accaacaaggtggtgtgctcGtcaccactctgccccgccta	9	16	2	0			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	142840438	142840438	G	A	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	1	known	silent	c.780	p.S260	0.092	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	9	0	0	8	4	33.33	-	-	-	A	142840438	G	A	142840438	2	1	859	1	0	0	0	0	0	0	0	1	3433	1132	40	1		1	CHST2	3	142840438	Silent	SNP	G	TCGA-E9-A227-01A-11D-A159-09		142840438	55181992	1	70942										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	26	0	0	57	26	31.33	-	-	-	G	178952085	A	G	178952085	3	3	859	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A227-01A-11D-A159-09	36111647	178952085	19070345	2	70943										
GPR98	0	genome.wustl.edu	37	chr5	89948176	89948176	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	tttgtaggattttgaggcacCgaggatactttggtagtgtt	13	4	0	1			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	5	89948176	89948176	C	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	nonsense	c.3430	p.R1144*	0.999	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	59	0	0	125	45	26.47	-	-	-	T	89948176	C	T	89948176	4	4	859	1	0	0	0	0	0	1	0	0	6772	644	23	1	3504	1	GPR98	5	89948176	Nonsense_Mutation	SNP	C	TCGA-E9-A227-01A-11D-A159-09		89948176	90967084	3	70944										
CLIC3	0	genome.wustl.edu	37	chr9	139889217	139889217	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	ttgaactctttctcctgcatCgcgctgtccaggtagcggcg	11	13	2	1			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	9	139889217	139889217	C	T	SNP	CLIC3	ENST00000494426	human	ensembl	69_37n	-1	known	silent	c.627	p.A209	0.033	superfamily_Glutathione-S-Trfase_C-like	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel	-	no_errors	CLIC3	HGNC	ENSG00000169583	16	0	0	21	11	34.38	-	-	-	T	139889217	C	T	139889217	2	4	859	1	0	0	0	0	0	0	0	1	3557	871	31	1		1	CLIC3	9	139889217	Silent	SNP	C	TCGA-E9-A227-01A-11D-A159-09		139889217	1324214	4	70945										
MED19	0	genome.wustl.edu	37	chr11	57472466	57472467	+	Frame_Shift_Ins	INS	-	-	C													0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	ggccagtgtggaggcggaagINSccggccagcatggtccctgt							TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	11	57472466	57472467	-	C	INS	MED19	ENST00000431606	human	ensembl	69_37n	-1	known	frame_shift_ins	c.453_452	p.F152fs	0.999:1.000	pfam_Mediator_Med19_met	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	MED19	HGNC	ENSG00000156603	17	0	0	48	19	28.36	-	-	-	C	57472467	-	C	57472466	7	5	859	1	0	1	1	0	0	0	0	0	9508	958	34	0	143	0	MED19	11	57472466	Frame_Shift_Ins	INS	-	TCGA-E9-A227-01A-11D-A159-09		57472466	77534050	5	70946										
TBC1D4	0	genome.wustl.edu	37	chr13	75884201	75884201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	aatcttttctgggtcatcctCcccagacaggaatacaacca	6	13	3	1			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	13	75884201	75884201	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.2470	p.E824K	0.832	pfam_DUF3350	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	54	0	0	119	40	25.16	-	-	-	T	75884201	C	T	75884201	3	4	859	1	0	0	0	0	1	0	0	0	15717	864	30	2	1458	2	TBC1D4	13	75884201	Missense_Mutation	SNP	C	TCGA-E9-A227-01A-11D-A159-09		75884201	39285677	6	70947										
ATP10A	0	genome.wustl.edu	37	chr15	25966903	25966903	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	tttatctgagaaaatgtactGtatctgtcctaagtcttccg	7	8	3	1			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	15	25966903	25966903	G	C	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1264	p.Q422E	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	40	0	0	72	23	23.96	-	-	-	C	25966903	G	C	25966903	3	2	859	1	0	0	0	0	1	0	0	0	1120	1386	48	4	3295	4	ATP10A	15	25966903	Missense_Mutation	SNP	G	TCGA-E9-A227-01A-11D-A159-09		25966903	76564489	7	70948										
HERC1	0	genome.wustl.edu	37	chr15	64005094	64005094	+	Frame_Shift_Del	DEL	C	C	-													0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	tctgcagtaagactttcactCctgtctcacatgtacaaaaa							TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	15	64005094	64005094	C	-	DEL	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	frame_shift_del	c.4464	p.S1489fs	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	30	0	0	61	21	25.3	-	-	-	-	64005094	C	-	64005094	7	5	859	1	0	1	0	1	0	0	0	0	7108	869	30	0	10341	0	HERC1	15	64005094	Frame_Shift_Del	DEL	C	TCGA-E9-A227-01A-11D-A159-09	38038191	64005094	38526298	8	70949										
PRR14	0	genome.wustl.edu	37	chr16	30667597	30667597	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	atgccttgctcctggaggaaGaaacagtagatcgggagcag	14	8	0	2			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	16	30667597	30667597	G	A	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	missense	c.1723	p.E575K	0.991	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	12	0	0	22	7	24.14	-	-	-	A	30667597	G	A	30667597	3	1	859	1	0	0	0	0	1	0	0	0	12667	943	33	2	1765	2	PRR14	16	30667597	Missense_Mutation	SNP	G	TCGA-E9-A227-01A-11D-A159-09		30667597	59687156	9	70950										
CTCF	0	genome.wustl.edu	37	chr16	67645934	67645934	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	tggatcgtcacatgaaaagcCacactgatgagagaccacac	9	11	1	4			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	16	67645934	67645934	C	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.862	p.H288D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	27	0	0	43	32	42.67	-	-	-	G	67645934	C	G	67645934	3	3	859	1	0	0	0	0	1	0	0	0	4032	594	21	4	868	4	CTCF	16	67645934	Missense_Mutation	SNP	C	TCGA-E9-A227-01A-11D-A159-09	36978337	67645934	22708819	10	70951										
DNAH2	0	genome.wustl.edu	37	chr17	7708590	7708590	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	gccctggagtctctgaacaaGaaggatataggagagatcaa	12	7	2	3			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	7708590	7708590	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.9321	p.K3107N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	35	0	0	77	24	23.76	-	-	-	C	7708590	G	C	7708590	3	2	859	1	0	0	0	0	1	0	0	0	4638	933	33	2	9559	2	DNAH2	17	7708590	Missense_Mutation	SNP	G	TCGA-E9-A227-01A-11D-A159-09		7708590	73486620	11	70952										
MARCH10	0	genome.wustl.edu	37	chr17	60865932	60865932	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	gtttcttctcatttgggtctCttctatattcctgtcgtctc	6	11	5	0			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	60865932	60865932	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	missense	c.119	p.R40K	0.539	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	55	0	0	104	41	28.28	-	-	-	T	60865932	C	T	60865932	3	4	859	1	0	0	0	0	1	0	0	0	9370	913	32	2	2343	2	MARCH10	17	60865932	Missense_Mutation	SNP	C	TCGA-E9-A227-01A-11D-A159-09	53157342	60865932	20329278	12	70953										
MAGEC3	0	genome.wustl.edu	37	chrX	140983249	140983249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.230769230769231	3	0.552863703178389	1.79189189189189	1.99099099099099	1.70656370656371	1	1	0	ccaaggacagaagaagccccGgtctgccctgcgctgccata	11	15	1	2			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	X	140983249	140983249	G	A	SNP	MAGEC3	ENST00000448920	human	ensembl	69_37n	1	known	silent	c.360	p.P120	0.000	NULL	NULL	-	no_errors	MAGEC3	HGNC	ENSG00000165509	21	0	0	31	20	39.22	-	-	-	A	140983249	G	A	140983249	2	1	859	1	0	0	0	0	0	0	0	1	9253	1131	39	1		1	MAGEC3	23	140983249	Silent	SNP	G	TCGA-E9-A227-01A-11D-A159-09		140983249	14287311	13	70954										
CASZ1	0	genome.wustl.edu	37	chr1	10709343	10709343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ggccagcagcccctcacctgCgcaggtacaccttccagggc	11	18	1	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	10709343	10709343	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.3032	p.R1011H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	35	0	0	10	6	37.5	-	-	-	T	10709343	C	T	10709343	3	4	860	1	0	0	0	0	1	0	0	0	2710	768	27	1	2283	1	CASZ1	1	10709343	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		10709343	238541278	1	70955										
MTOR	0	genome.wustl.edu	37	chr1	11294317	11294317	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ccactgtgctccaactctgtCaaaatctgtagggaagaaag	9	10	3	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	11294317	11294317	C	G	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.2214	p.L738F	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	65	0	0	38	15	28.3	-	-	-	G	11294317	C	G	11294317	3	3	860	1	0	0	0	0	1	0	0	0	10026	825	29	2	5615	2	MTOR	1	11294317	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09	584974	11294317	237956304	2	70956										
AMPD2	0	genome.wustl.edu	37	chr1	110168296	110168296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ccccccaggagctgttcaccCgctcactggctgagagcgag	12	16	2	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	110168296	110168296	C	T	SNP	AMPD2	ENST00000256578	human	ensembl	69_37n	1	known	missense	c.397	p.R133C	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337	36	0	0	29	19	39.58	-	-	-	T	110168296	C	T	110168296	3	4	860	1	0	0	0	0	1	0	0	0	586	652	23	1	448	1	AMPD2	1	110168296	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09	98873979	110168296	139082325	3	70957										
NME7	0	genome.wustl.edu	37	chr1	169279296	169279296	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tccagcctttgatattgcatCtggtttaattagggctagcg	10	8	1	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	169279296	169279296	C	T	SNP	NME7	ENST00000367811	human	ensembl	69_37n	-1	known	missense	c.301	p.D101N	1.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	84	0	0	75	65	46.43	-	-	-	T	169279296	C	T	169279296	3	4	860	1	0	0	0	0	1	0	0	0	10568	913	32	2	865	2	NME7	1	169279296	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09	59111000	169279296	79971325	4	70958										
SLC35F3	0	genome.wustl.edu	37	chr1	234041449	234041449	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ctcacgtccatcgaggagcgGatcctgcgcatcactggcta	11	14	2	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	234041449	234041449	G	A	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	silent	c.228	p.R76	1.000	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	29	0	0	5	4	44.44	-	-	-	A	234041449	G	A	234041449	2	1	860	1	0	0	0	0	0	0	0	1	14679	1161	41	2		2	SLC35F3	1	234041449	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09	64762153	234041449	15209172	5	70959										
NID1	0	genome.wustl.edu	37	chr1	236156947	236156947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cggcctgcacccacttacacGggggcgtcatcccgggcctg	13	17	1	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	1	236156947	236156947	G	A	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.2753	p.P918L	0.763	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	13	0	0	4	5	55.56	-	-	-	A	236156947	G	A	236156947	3	1	860	1	0	0	0	0	1	0	0	0	10486	1116	39	1	1022	1	NID1	1	236156947	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09	2115498	236156947	13093674	6	70960										
SFXN5	0	genome.wustl.edu	37	chr2	73249692	73249692	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	agatcttctcattggtgtccGgatgtagaatagcctggcaa	11	8	2	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	2	73249692	73249692	G	C	SNP	SFXN5	ENST00000272433	human	ensembl	69_37n	-1	known	missense	c.290	p.P97R	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040	77	0	0	19	11	36.67	-	-	-	C	73249692	G	C	73249692	3	2	860	1	0	0	0	0	1	0	0	0	14286	1116	39	3	772	3	SFXN5	2	73249692	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09		73249692	169949681	7	70961										
FBLN2	0	genome.wustl.edu	37	chr3	13669372	13669372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ggcacgcacacctgccagccGggcttcttgtgccagaacac	11	16	1	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	3	13669372	13669372	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	1	known	silent	c.2472	p.P824	0.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	27	0	0	22	13	37.14	-	-	-	A	13669372	G	A	13669372	2	1	860	1	0	0	0	0	0	0	0	1	5745	1103	39	1		1	FBLN2	3	13669372	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09		13669372	184353058	8	70962										
CACNA2D2	0	genome.wustl.edu	37	chr3	50404847	50404847	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tcctggtgtgggggcttgaaGacataaccgtggttatccag	14	8	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	3	50404847	50404847	G	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	silent	c.2400	p.V800	1.000	NULL	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	47	0	0	45	29	39.19	-	-	-	A	50404847	G	A	50404847	2	1	860	1	0	0	0	0	0	0	0	1	2574	929	33	2		2	CACNA2D2	3	50404847	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09	36735475	50404847	147617583	9	70963										
ATP11B	0	genome.wustl.edu	37	chr3	182566341	182566341	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cacagaaacgatctgcagtaGaaaagtaagaaaactgtttt	8	6	1	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	3	182566341	182566341	G	C	SNP	ATP11B	ENST00000323116	human	ensembl	69_37n	1	known	missense	c.847	p.E283Q	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11B	HGNC	ENSG00000058063	72	0	0	35	14	28.57	-	-	-	C	182566341	G	C	182566341	3	2	860	1	0	0	0	0	1	0	0	0	1124	943	33	2	885	2	ATP11B	3	182566341	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09	132161494	182566341	15456089	10	70964										
ELF2	0	genome.wustl.edu	37	chr4	139981717	139981717	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cctgctaaatcttcattacaGgtttcacttttgtcatcatc	4	11	5	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	4	139981717	139981717	G	T	SNP	ELF2	ENST00000379550	human	ensembl	69_37n	-1	known	silent	c.918	p.T306	0.863	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF2	HGNC	ENSG00000109381	51	0	0	31	21	40.38	-	-	-	T	139981717	G	T	139981717	2	4	860	1	0	0	0	0	0	0	0	1	5091	987	35	4		4	ELF2	4	139981717	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09		139981717	51172559	11	70965										
DDX4	0	genome.wustl.edu	37	chr5	55094277	55094277	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ggctgcagagtttttaaagtCaaattatctgtttgttgctg	10	5	2	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	5	55094277	55094277	C	T	SNP	DDX4	ENST00000505374	human	ensembl	69_37n	1	known	missense	c.1493	p.S498L	0.003	smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	153	1	0.65	188	69	26.85	-	-	-	T	55094277	C	T	55094277	3	4	860	1	0	0	0	0	1	0	0	0	4391	838	29	2	1600	2	DDX4	5	55094277	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		55094277	125820983	12	70966										
PCDHGA3	0	genome.wustl.edu	37	chr5	140725490	140725490	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ggcgaggtgcgcacggcgcgAgccctgctggacagagacgc	18	13	0	1			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	5	140725490	140725490	A	C	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	1	known	silent	c.1890	p.R630	0.688	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	29	0	0	26	5	16.13	-	-	-	C	140725490	A	C	140725490	2	2	860	1	0	0	0	0	0	0	0	1	11628	291	11	5		5	PCDHGA3	5	140725490	Silent	SNP	A	TCGA-E9-A228-01A-31D-A159-09	85631213	140725490	40189770	13	70967										
ANXA6	0	genome.wustl.edu	37	chr5	150509044	150509044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cgagcatgtccaactcactaCgggagaccatgatgcggatc	11	12	1	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	5	150509044	150509044	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	69_37n	-1	known	missense	c.842	p.R281H	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043	38	0	0	62	7	10.14	-	-	-	T	150509044	C	T	150509044	3	4	860	1	0	0	0	0	1	0	0	0	721	536	19	1	1239	1	ANXA6	5	150509044	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09	9783554	150509044	30406216	14	70968										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549548	32549548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ggatagaaaccactcacagaGcagaccaggaggttgtggtg	14	8	1	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	6	32549548	32549548	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	silent	c.438	p.C146	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	37	0	0	81	18	18.18	-	-	-	A	32549548	G	A	32549548	2	1	860	1	0	0	0	0	0	0	0	1	7259	963	34	4		4	HLA-DRB1	6	32549548	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09		32549548	138565519	15	70969			1	116		2	2	16	G		1.841261e-05
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549563	32549563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	acagagcagaccaggaggttGtggtgctgcaggggctgggt	19	7	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	6	32549563	32549563	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	silent	c.423	p.H141	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	34	0	0	82	18	18	-	-	-	A	32549563	G	A	32549563	2	1	860	1	0	0	0	0	0	0	0	1	7259	1368	48	4		4	HLA-DRB1	6	32549563	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09	15	32549563	138565504	16	70970			1	116		2	2	16	G		1.841261e-05
TTLL2	0	genome.wustl.edu	37	chr6	167754327	167754327	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gcctcttatgagaagatcaaAgaagtgattggtcatggttg	12	5	3	4			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	6	167754327	167754327	A	T	SNP	TTLL2	ENST00000239587	human	ensembl	69_37n	1	known	missense	c.939	p.K313N	0.973	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC	ENSG00000120440	80	0	0	26	48	64.86	-	-	-	T	167754327	A	T	167754327	3	4	860	1	0	0	0	0	1	0	0	0	16824	69	3	5	949	5	TTLL2	6	167754327	Missense_Mutation	SNP	A	TCGA-E9-A228-01A-31D-A159-09	135204764	167754327	3360740	17	70971										
NFE2L3	0	genome.wustl.edu	37	chr7	26224525	26224525	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cattggccacagaagacaacTttgatccaatcgatgtttct	7	10	1	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	7	26224525	26224525	T	A	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.1207	p.F403I	0.364	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	54	0	0	41	16	28.07	-	-	-	A	26224525	T	A	26224525	3	1	860	1	0	0	0	0	1	0	0	0	10441	1609	56	5	1221	5	NFE2L3	7	26224525	Missense_Mutation	SNP	T	TCGA-E9-A228-01A-31D-A159-09		26224525	132914138	18	70972										
HEY1	0	genome.wustl.edu	37	chr8	80677525	80677525	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gcattgggagacagtaagtgGaaggagccgaaagagaaggg	18	4	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	8	80677525	80677525	G	A	SNP	HEY1	ENST00000337919	human	ensembl	69_37n	-1	known	silent	c.825	p.F275	0.997	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEY1	HGNC	ENSG00000164683	44	0	0	50	27	35.06	-	-	-	A	80677525	G	A	80677525	2	1	860	1	0	0	0	0	0	0	0	1	7129	1165	41	2		2	HEY1	8	80677525	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09		80677525	65686497	19	70973										
MAMDC4	0	genome.wustl.edu	37	chr9	139752492	139752492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gtgctcagcctcagtgcccaCggcgggcttgcctggcgcct	14	16	2	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	9	139752492	139752492	C	A	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	1	known	missense	c.2763	p.H921Q	0.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	13	0	0	2	4	66.67	-	-	-	A	139752492	C	A	139752492	3	1	860	1	0	0	0	0	1	0	0	0	9275	535	19	3	2604	3	MAMDC4	9	139752492	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		139752492	1460939	20	70974										
VPS26A	0	genome.wustl.edu	37	chr10	70917832	70917832	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	taaagtgacaatagtgagaaGactgacagatttggtaaaag	11	3	0	5			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	10	70917832	70917832	G	A	SNP	VPS26A	ENST00000263559	human	ensembl	69_37n	1	known	missense	c.416	p.R139K	1.000	pfam_VPS26	pfam_VPS26	-	no_errors	VPS26A	HGNC	ENSG00000122958	69	0	0	70	14	16.67	-	-	-	A	70917832	G	A	70917832	3	1	860	1	0	0	0	0	1	0	0	0	17294	942	33	2	434	2	VPS26A	10	70917832	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09		70917832	64616915	21	70975										
PPP1R12A	0	genome.wustl.edu	37	chr12	80199488	80199488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gcaacaggaatggtcactgcCgtaggaacactgtccttttc	10	11	1	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	12	80199488	80199488	C	T	SNP	PPP1R12A	ENST00000553081	human	ensembl	69_37n	-1	novel	missense	c.659	p.R220Q	0.996	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	PPP1R12A	HGNC	ENSG00000058272	81	0	0	80	30	27.27	-	-	-	T	80199488	C	T	80199488	3	4	860	1	0	0	0	0	1	0	0	0	12431	639	23	1	1256	1	PPP1R12A	12	80199488	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		80199488	53652407	22	70976										
MYF5	0	genome.wustl.edu	37	chr12	81111126	81111126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cactatgcgcgagcggaggcGcctgaagaaggtcaaccagg	15	11	1	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	12	81111126	81111126	G	A	SNP	MYF5	ENST00000228644	human	ensembl	69_37n	1	known	missense	c.284	p.R95H	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_Basic,pfam_Myf5,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF5	HGNC	ENSG00000111049	22	0	0	10	7	41.18	-	-	-	A	81111126	G	A	81111126	3	1	860	1	0	0	0	0	1	0	0	0	10099	1087	38	1	286	1	MYF5	12	81111126	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09	911638	81111126	52740769	23	70977										
DHX37	0	genome.wustl.edu	37	chr12	125449009	125449009	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cagctgatgcctgggagaccCaggtgacacggaaggaggat	16	9	0	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	12	125449009	125449009	C	A	SNP	DHX37	ENST00000308736	human	ensembl	69_37n	-1	known	missense	c.1976	p.W659L	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	46	0	0	32	15	31.91	-	-	-	A	125449009	C	A	125449009	3	1	860	1	0	0	0	0	1	0	0	0	4546	595	21	4	1549	4	DHX37	12	125449009	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09	44337883	125449009	8402886	24	70978										
TOX4	0	genome.wustl.edu	37	chr14	21963403	21963403	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cacaggttgagtctccttctCagatggatgttgaattggtg	12	7	2	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	14	21963403	21963403	C	T	SNP	TOX4	ENST00000262709	human	ensembl	69_37n	1	known	nonsense	c.1657	p.Q553*	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TOX4	HGNC	ENSG00000092203	79	0	0	69	32	31.68	-	-	-	T	21963403	C	T	21963403	4	4	860	1	0	0	0	0	0	1	0	0	16476	827	29	2	1687	2	TOX4	14	21963403	Nonsense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		21963403	85386137	25	70979										
STXBP6	0	genome.wustl.edu	37	chr14	25288273	25288273	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gtttctgcaaactgctgggcGctgttcttcaggtcttctgt	11	10	5	0			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	14	25288273	25288273	G	A	SNP	STXBP6	ENST00000323944	human	ensembl	69_37n	-1	known	silent	c.579	p.S193	0.989	pfam_Synaptobrevin,pfscan_Synaptobrevin	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952	81	0	0	48	16	25	-	-	-	A	25288273	G	A	25288273	2	1	860	1	0	0	0	0	0	0	0	1	15449	1078	38	1		1	STXBP6	14	25288273	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09	3324870	25288273	82061267	26	70980										
DNAL1	0	genome.wustl.edu	37	chr14	74156135	74156135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	agacctggtgtttgtaggcaAtcccttggaagagaaacatt	11	7	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	14	74156135	74156135	A	G	SNP	DNAL1	ENST00000553645	human	ensembl	69_37n	1	known	missense	c.449	p.N150S	1.000	NULL	NULL	-	no_errors	DNAL1	HGNC	ENSG00000119661	67	0	0	62	20	24.39	-	-	-	G	74156135	A	G	74156135	3	3	860	1	0	0	0	0	1	0	0	0	4692	101	4	5	475	5	DNAL1	14	74156135	Missense_Mutation	SNP	A	TCGA-E9-A228-01A-31D-A159-09	48867862	74156135	33193405	27	70981										
PIF1	0	genome.wustl.edu	37	chr15	65114690	65114690	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ccactacctgcactcccagtGaagaagatgctctggccttt	8	14	1	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	15	65114690	65114690	G	A	SNP	PIF1	ENST00000333425	human	ensembl	69_37n	-1	known	silent	c.678	p.F226	1.000	NULL	pfam_DNA_helicase_PIF1,pfam_DNA_helicase	-	no_errors	PIF1	HGNC	ENSG00000140451	39	0	0	24	8	25	-	-	-	A	65114690	G	A	65114690	2	1	860	1	0	0	0	0	0	0	0	1	11957	1281	45	2		2	PIF1	15	65114690	Silent	SNP	G	TCGA-E9-A228-01A-31D-A159-09		65114690	37416702	28	70982										
IREB2	0	genome.wustl.edu	37	chr15	78783006	78783006	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ctattgaaaatgcccatgtcTtattatatttgggagactct	7	7	2	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	15	78783006	78783006	T	G	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.2227	p.L743V	0.407	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	66	0	0	60	8	11.76	-	-	-	G	78783006	T	G	78783006	3	3	860	1	0	0	0	0	1	0	0	0	7880	1606	56	5	2297	5	IREB2	15	78783006	Missense_Mutation	SNP	T	TCGA-E9-A228-01A-31D-A159-09	13668316	78783006	23748386	29	70983										
VWA3A	0	genome.wustl.edu	37	chr16	22152977	22152977	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	caagggaagcagagacatctCttttactgttctacacagag	9	9	2	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	16	22152977	22152977	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.2458	p.L820F	0.326	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	45	0	0	56	21	27.27	-	-	-	T	22152977	C	T	22152977	3	4	860	1	0	0	0	0	1	0	0	0	17337	913	32	2	2552	2	VWA3A	16	22152977	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		22152977	68201776	30	70984										
BRIP1	0	genome.wustl.edu	37	chr17	59871074	59871074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tctttctacaagatattcagCgtttgcttctaaccaactga	5	10	4	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	17	59871074	59871074	C	T	SNP	BRIP1	ENST00000259008	human	ensembl	69_37n	-1	known	missense	c.1357	p.A453T	0.998	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492	38	0	0	45	25	35.21	-	-	-	T	59871074	C	T	59871074	3	4	860	1	0	0	0	0	1	0	0	0	1522	768	27	1	2436	1	BRIP1	17	59871074	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		59871074	21324136	31	70985										
STRADA	0	genome.wustl.edu	37	chr17	61788157	61788157	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	agtggctcgatatggcacgaTattgggatggttgaagagtt	15	4	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	17	61788157	61788157	T	C	SNP	STRADA	ENST00000336174	human	ensembl	69_37n	-1	known	missense	c.388	p.I130V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	90	0	0	117	51	30.36	-	-	-	C	61788157	T	C	61788157	3	2	860	1	0	0	0	0	1	0	0	0	15415	1406	49	5	993	5	STRADA	17	61788157	Missense_Mutation	SNP	T	TCGA-E9-A228-01A-31D-A159-09	1917083	61788157	19407053	32	70986										
SALL3	0	genome.wustl.edu	37	chr18	76754213	76754213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	cctgcgcgtgcagcactcctGccccatctgccagaagaagt	10	16	1	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	18	76754213	76754213	G	A	SNP	SALL3	ENST00000537592	human	ensembl	69_37n	1	known	missense	c.2222	p.C741Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463	30	0	0	19	25	56.82	-	-	-	A	76754213	G	A	76754213	3	1	860	1	0	0	0	0	1	0	0	0	13898	1319	46	4	2228	4	SALL3	18	76754213	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09		76754213	1323035	33	70987										
MUC16	0	genome.wustl.edu	37	chr19	9070657	9070657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	gtgtgggaatccctgagacaCggttgaatgagtccctccct	12	11	0	3			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	19	9070657	9070657	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16789	p.V5597M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	56	0	0	56	32	36.36	-	-	-	T	9070657	C	T	9070657	3	4	860	1	0	0	0	0	1	0	0	0	10045	536	19	1	27062	1	MUC16	19	9070657	Missense_Mutation	SNP	C	TCGA-E9-A228-01A-31D-A159-09		9070657	50058326	34	70988										
AP1M2	0	genome.wustl.edu	37	chr19	10689625	10689625	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tcaatgacagactcaatccaGatcagtggcttgacctgtgg	10	10	3	4			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	19	10689625	10689625	G	C	SNP	AP1M2	ENST00000590923	human	ensembl	69_37n	-1	known	missense	c.837	p.I279M	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M2	HGNC	ENSG00000129354	54	0	0	50	18	26.47	-	-	-	C	10689625	G	C	10689625	3	2	860	1	0	0	0	0	1	0	0	0	736	932	33	2	460	2	AP1M2	19	10689625	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09	1618968	10689625	48439358	35	70989										
ZNF461	0	genome.wustl.edu	37	chr19	37134740	37134740	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tattgtccaagaaattattgTgaaatccccaagttttccat	5	8	0	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	19	37134740	37134740	T	C	SNP	ZNF461	ENST00000588268	human	ensembl	69_37n	-1	known	missense	c.257	p.H86R	0.054	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808	63	0	0	55	22	28.57	-	-	-	C	37134740	T	C	37134740	3	2	860	1	0	0	0	0	1	0	0	0	18021	1696	59	5	1442	5	ZNF461	19	37134740	Missense_Mutation	SNP	T	TCGA-E9-A228-01A-31D-A159-09	26445115	37134740	21994243	36	70990										
SYNJ1	0	genome.wustl.edu	37	chr21	34014274	34014274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	ttgaggtgaaggctgactgcGtcctggaacaaagacatcat	12	8	1	4			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	21	34014274	34014274	G	A	SNP	SYNJ1	ENST00000433931	human	ensembl	69_37n	-1	known	missense	c.3637	p.R1213C	0.998	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	80	0	0	55	40	42.11	-	-	-	A	34014274	G	A	34014274	3	1	860	1	0	0	0	0	1	0	0	0	15544	1145	40	1	1242	1	SYNJ1	21	34014274	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09		34014274	14115621	37	70991										
MMGT1	0	genome.wustl.edu	37	chrX	135053263	135053263	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.289473684210526	11	0.0157648754711492	2.48185941043084	4.73809523809524	2.10582010582011	0.0861089375021264	0.5224358974359	7	tttctgttaatcgcatataaGaacgatctataaaccagaag	6	7	2	2			TCGA-E9-A228-01A-31D-A159-09	TCGA-E9-A228-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a804a8d-7dc8-4b5b-9537-b7f8f7133bda	c618a148-78cb-425d-b026-e2f1c10773bd	X	135053263	135053263	G	A	SNP	MMGT1	ENST00000433339	human	ensembl	69_37n	-1	known	missense	c.281	p.S94F	1.000	pfam_Magnesium_transport	pfam_Magnesium_transport	-	no_errors	MMGT1	HGNC	ENSG00000169446	88	0	0	89	10	10.1	-	-	-	A	135053263	G	A	135053263	3	1	860	1	0	0	0	0	1	0	0	0	9718	942	33	2	321	2	MMGT1	23	135053263	Missense_Mutation	SNP	G	TCGA-E9-A228-01A-31D-A159-09		135053263	20217297	38	70992										
MMACHC	0	genome.wustl.edu	37	chr1	45974548	45974548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	gtgctgctgccagggatagaGgtgccagatctgccacccag	14	12	1	2			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	45974548	45974548	G	A	SNP	MMACHC	ENST00000401061	human	ensembl	69_37n	1	known	silent	c.510	p.E170	0.999	NULL	NULL	-	no_errors	MMACHC	HGNC	ENSG00000132763	86	0	0	60	20	25	-	-	-	A	45974548	G	A	45974548	2	1	861	1	0	0	0	0	0	0	0	1	9712	991	35	4		4	MMACHC	1	45974548	Silent	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		45974548	203276073	1	70993										
SPTA1	0	genome.wustl.edu	37	chr1	158583566	158583566	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	cttgggctcatgttcatcctCctccaccatgggcaagtagt	9	13	2	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	158583566	158583566	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	nonsense	c.6934	p.E2312*	1.000	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	44	0	0	45	18	28.57	-	-	-	A	158583566	C	A	158583566	4	1	861	1	0	0	0	0	0	1	0	0	15207	864	30	2	337	2	SPTA1	1	158583566	Nonsense_Mutation	SNP	C	TCGA-E9-A229-01A-31D-A17G-09	112609018	158583566	90667055	2	70994										
HEATR5B	0	genome.wustl.edu	37	chr2	37306265	37306265	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	attaaagtaagtacttacaaTtttgttggtaagtaggccgc	9	5	0	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	37306265	37306265	T	C	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	silent	c.336	p.K112	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	66	0	0	54	20	27.03	-	-	-	C	37306265	T	C	37306265	2	2	861	1	0	0	0	0	0	0	0	1	7083	1490	52	5		5	HEATR5B	2	37306265	Silent	SNP	T	TCGA-E9-A229-01A-31D-A17G-09		37306265	205893108	3	70995										
ARL6IP6	0	genome.wustl.edu	37	chr2	153575506	153575508	+	In_Frame_Del	DEL	TCC	TCC	-													0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	cttcgccattcttctcgcctTcctcctcgccatcgcctact							TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	153575506	153575508	TCC	-	DEL	ARL6IP6	ENST00000326446	human	ensembl	69_37n	1	known	in_frame_del	c.368_370	p.L125in_frame_del	0.946:0.969:0.994	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	100	0	0	79	37	31.62	-	-	-	-	153575508	TCC	-	153575506	7	5	861	1	0	1	0	1	0	0	0	0	949	1783	62	0	370	0	ARL6IP6	2	153575506	In_Frame_Del	DEL	TCC	TCGA-E9-A229-01A-31D-A17G-09	116269241	153575506	89623867	4	70996										
OSBPL6	0	genome.wustl.edu	37	chr2	179213982	179213982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	tgctaccatgtcaccagttcGcttgcattcctccaacccca	5	17	1	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	179213982	179213982	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	69_37n	1	known	missense	c.1031	p.R344H	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156	145	0	0	108	32	22.86	-	-	-	A	179213982	G	A	179213982	3	1	861	1	0	0	0	0	1	0	0	0	11354	1087	38	1	1179	1	OSBPL6	2	179213982	Missense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09	25638476	179213982	63985391	5	70997										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0	46	9	16.36	-	-	-	G	178952085	A	G	178952085	3	3	861	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A229-01A-31D-A17G-09		178952085	19070345	6	70998										
PLK4	0	genome.wustl.edu	37	chr4	128804491	128804491	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	gtgaaaatacattgccaattGaaacatccttctatcttgga	6	8	2	2			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	4	128804491	128804491	G	A	SNP	PLK4	ENST00000270861	human	ensembl	69_37n	1	known	silent	c.201	p.L67	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	82	0	0	41	22	34.92	-	-	-	A	128804491	G	A	128804491	2	1	861	1	0	0	0	0	0	0	0	1	12172	1281	45	2		2	PLK4	4	128804491	Silent	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		128804491	62349785	7	70999										
CHD1	0	genome.wustl.edu	37	chr5	98240749	98240749	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	ttccatcactactgcttccaGaactcgaaccagatccagag	6	14	1	3			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	5	98240749	98240749	G	C	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.107	p.S36C	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	74	0	0	52	28	35	-	-	-	C	98240749	G	C	98240749	3	2	861	1	0	0	0	0	1	0	0	0	3352	942	33	2	5161	2	CHD1	5	98240749	Missense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		98240749	82674511	8	71000										
SARDH	0	genome.wustl.edu	37	chr9	136531950	136531950	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	cggacatggcccaccacttgGccgttcctccagatggcctc	10	17	0	1			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	136531950	136531950	G	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.2538	p.G846	0.876	pfam_GCV_T_C	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	46	0	0	29	11	27.5	-	-	-	T	136531950	G	T	136531950	2	4	861	1	0	0	0	0	0	0	0	1	13928	1190	42	4		4	SARDH	9	136531950	Silent	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		136531950	4681481	9	71001										
NUP98	0	genome.wustl.edu	37	chr11	3803284	3803284	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	aaacttactctgtccaaatgTtgaagttgtgccaaagccac	7	10	1	1			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	3803284	3803284	T	C	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.64	p.T22A	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	109	0	0	57	24	29.63	-	-	-	C	3803284	T	C	3803284	3	2	861	1	0	0	0	0	1	0	0	0	10846	1725	60	5	5538	5	NUP98	11	3803284	Missense_Mutation	SNP	T	TCGA-E9-A229-01A-31D-A17G-09		3803284	131203232	10	71002										
CYBASC3	0	genome.wustl.edu	37	chr11	61120579	61120579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	cgcagccacatggacgcccaGggcaggaggaagacagcaaa	14	12	0	1			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	61120579	61120579	G	C	SNP	CYBASC3	ENST00000540755	human	ensembl	69_37n	-1	known	missense	c.217	p.L73V	1.000	NULL	NULL	-	no_errors	CYBASC3	HGNC	ENSG00000162144	33	0	0	23	10	30.3	-	-	-	C	61120579	G	C	61120579	3	2	861	1	0	0	0	0	1	0	0	0	4163	987	35	4	314	4	CYBASC3	11	61120579	Missense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09	57317295	61120579	73885937	11	71003										
RTN3	0	genome.wustl.edu	37	chr11	63525654	63525654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	agcaaaactccctggaatcgCcaaaaaaaaggcagaataag	8	9	0	1			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	63525654	63525654	C	T	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	missense	c.3080	p.A1027V	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	70	0	0	51	11	17.74	-	-	-	T	63525654	C	T	63525654	3	4	861	1	0	0	0	0	1	0	0	0	13813	739	26	4	3114	4	RTN3	11	63525654	Missense_Mutation	SNP	C	TCGA-E9-A229-01A-31D-A17G-09	2405075	63525654	71480862	12	71004										
HEPACAM	0	genome.wustl.edu	37	chr11	124794753	124794753	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	ggagccattttcaaagagtcGgatacggtctcgatagtcag	12	8	3	1			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	124794753	124794753	G	A	SNP	HEPACAM	ENST00000298251	human	ensembl	69_37n	-1	known	nonsense	c.298	p.R100*	0.950	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM	HGNC	ENSG00000165478	64	0	0	21	11	33.33	-	-	-	A	124794753	G	A	124794753	4	1	861	1	0	0	0	0	0	1	0	0	7103	1124	39	1	976	1	HEPACAM	11	124794753	Nonsense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09	61269099	124794753	10211763	13	71005										
TNP2	0	genome.wustl.edu	37	chr16	11362818	11362818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	tctttctgttcttggggcagCggcagtgcaggatggtgggc	17	8	3	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	16	11362818	11362818	C	T	SNP	TNP2	ENST00000312693	human	ensembl	69_37n	-1	known	missense	c.302	p.R101H	0.036	pfam_TP2	pfam_TP2	-	no_errors	TNP2	HGNC	ENSG00000178279	208	0	0	149	64	30.05	-	-	-	T	11362818	C	T	11362818	3	4	861	1	0	0	0	0	1	0	0	0	16429	768	27	1	122	1	TNP2	16	11362818	Missense_Mutation	SNP	C	TCGA-E9-A229-01A-31D-A17G-09		11362818	78991935	14	71006										
FXR2	0	genome.wustl.edu	37	chr17	7496417	7496417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	tcccctcgggttgggggatcCctgtcgccaggcccagctcg	14	16	0	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	7496417	7496417	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	silent	c.1413	p.R471	0.981	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	25	0	0	22	10	31.25	-	-	-	T	7496417	C	T	7496417	2	4	861	1	0	0	0	0	0	0	0	1	6165	622	22	4		4	FXR2	17	7496417	Silent	SNP	C	TCGA-E9-A229-01A-31D-A17G-09		7496417	73698793	15	71007										
TRPV2	0	genome.wustl.edu	37	chr17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-													0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	gctgcacttccgcggcatggTgctgctgctgctgctggcct							TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	16335490	16335492	TGC	-	DEL	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	in_frame_del	c.1865_1867	p.L626in_frame_del	1.000:1.000:1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	45	0	0	23	3	11.54	-	-	-	-	16335492	TGC	-	16335490	7	5	861	1	0	1	0	1	0	0	0	0	16692	1696	59	0	1907	0	TRPV2	17	16335490	In_Frame_Del	DEL	TGC	TCGA-E9-A229-01A-31D-A17G-09	8839073	16335490	64859720	16	71008										
PSTPIP2	0	genome.wustl.edu	37	chr18	43579418	43579418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	gtaccttttcttgttgcttcGggttcaccaggttggcactc	10	11	2	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	18	43579418	43579418	G	A	SNP	PSTPIP2	ENST00000409746	human	ensembl	69_37n	-1	known	missense	c.500	p.P167L	0.078	NULL	pfam_FCH,smart_FCH,pfscan_FCH	-	no_errors	PSTPIP2	HGNC	ENSG00000152229	161	0	0	111	35	23.81	-	-	-	A	43579418	G	A	43579418	3	1	861	1	0	0	0	0	1	0	0	0	12802	1116	39	1	536	1	PSTPIP2	18	43579418	Missense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		43579418	34497830	17	71009										
FOXA3	0	genome.wustl.edu	37	chr19	46376175	46376175	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	tacaacttcaaccaccctttCtccatcaacaacctaatgtc	1	16	3	0			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	19	46376175	46376175	C	T	SNP	FOXA3	ENST00000302177	human	ensembl	69_37n	1	known	silent	c.912	p.F304	1.000	pfam_Forkhead_box_C	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608	44	0	0	13	5	27.78	-	-	-	T	46376175	C	T	46376175	2	4	861	1	0	0	0	0	0	0	0	1	6037	912	32	2		2	FOXA3	19	46376175	Silent	SNP	C	TCGA-E9-A229-01A-31D-A17G-09		46376175	12752808	18	71010										
CASS4	0	genome.wustl.edu	37	chr20	55021046	55021046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	3	0.336974520300336	2.52083333333333	5.04166666666667	2.01666666666667	1	1	0	ctacccagcaccggggccccGtggtcctgaaggtgagcctt	13	15	0	2			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	20	55021046	55021046	G	A	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	1	known	missense	c.550	p.V184M	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	54	0	0	42	82	66.13	-	-	-	A	55021046	G	A	55021046	3	1	861	1	0	0	0	0	1	0	0	0	2708	1145	40	1	560	1	CASS4	20	55021046	Missense_Mutation	SNP	G	TCGA-E9-A229-01A-31D-A17G-09		55021046	8004474	19	71011										
STIL	0	genome.wustl.edu	37	chr1	47748020	47748020	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	tttaaaatcagtgataccttCtgactcactggatgaggact	8	8	3	3			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	47748020	47748020	C	G	SNP	STIL	ENST00000371877	human	ensembl	69_37n	-1	known	missense	c.1245	p.Q415H	0.999	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473	51	0	0	44	18	29.03	-	-	-	G	47748020	C	G	47748020	3	3	862	1	0	0	0	0	1	0	0	0	15373	912	32	2	2649	2	STIL	1	47748020	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		47748020	201502601	1	71012										
FAM151A	0	genome.wustl.edu	37	chr1	55075124	55075124	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	gaggatgccagcagcctgccTatggctccagctgtgctgtg	14	12	0	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	55075124	55075124	T	C	SNP	FAM151A	ENST00000302250	human	ensembl	69_37n	-1	known	missense	c.1575	p.I525M	0.961	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	22	0	0	32	13	28.89	-	-	-	C	55075124	T	C	55075124	3	2	862	1	0	0	0	0	1	0	0	0	5498	1512	53	5	186	5	FAM151A	1	55075124	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09	7327104	55075124	194175497	2	71013										
PTGS2	0	genome.wustl.edu	37	chr1	186648296	186648296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	tagtgcactgtgtttggagtGggtttcagaaataattttat	11	3	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	186648296	186648296	G	A	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	silent	c.207	p.P69	0.377	superfamily_Haem_peroxidase	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	47	0	0	102	14	12.07	-	-	-	A	186648296	G	A	186648296	2	1	862	1	0	0	0	0	0	0	0	1	12837	1335	47	4		4	PTGS2	1	186648296	Silent	SNP	G	TCGA-E9-A22A-01A-11D-A159-09	131573172	186648296	62602325	3	71014										
F13B	0	genome.wustl.edu	37	chr1	197009842	197009842	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	taaattattcttttccatttCagtaaaagataatgtgcatg	5	5	2	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	197009842	197009842	C	T	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	missense	c.1762	p.E588K	0.344	superfamily_Complement_control_module	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	31	0	0	60	9	13.04	-	-	-	T	197009842	C	T	197009842	3	4	862	1	0	0	0	0	1	0	0	0	5378	835	29	2	231	2	F13B	1	197009842	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	10361546	197009842	52240779	4	71015										
C1orf116	0	genome.wustl.edu	37	chr1	207195445	207195445	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	ggtaggacaggcgcttggagCtctgctcctgctccaggtca	14	12	2	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	207195445	207195445	C	A	SNP	C1orf116	ENST00000359470	human	ensembl	69_37n	-1	known	missense	c.1664	p.S555I	0.000	NULL	NULL	-	no_errors	C1orf116	HGNC	ENSG00000182795	33	0	0	68	11	13.92	-	-	-	A	207195445	C	A	207195445	3	1	862	1	0	0	0	0	1	0	0	0	2008	797	28	4	145	4	C1orf116	1	207195445	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	10185603	207195445	42055176	5	71016										
OR2L13	0	genome.wustl.edu	37	chr1	248263455	248263455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	cttttgtctacacctatcttCggcccaggaatctccgctca	6	15	4	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	248263455	248263455	C	T	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	missense	c.778	p.R260W	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	44	0	0	81	41	33.61	-	-	-	T	248263455	C	T	248263455	3	4	862	1	0	0	0	0	1	0	0	0	11079	875	31	1	780	1	OR2L13	1	248263455	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	41068010	248263455	987166	6	71017										
OR2M7	0	genome.wustl.edu	37	chr1	248487711	248487711	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	gtacatgggggtgtggagctGggtatccaggtagatgagga	19	4	0	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	1	248487711	248487711	G	A	SNP	OR2M7	ENST00000317965	human	ensembl	69_37n	-1	known	nonsense	c.160	p.Q54*	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186	141	0	0	375	82	17.9	-	-	-	A	248487711	G	A	248487711	4	1	862	1	0	0	0	0	0	1	0	0	11087	1357	47	4	781	4	OR2M7	1	248487711	Nonsense_Mutation	SNP	G	TCGA-E9-A22A-01A-11D-A159-09	224256	248487711	762910	7	71018										
LPIN1	0	genome.wustl.edu	37	chr2	11959665	11959665	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	tccagtgtttgacagacatcAaaaacctgtttttccccaac	5	12	1	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	2	11959665	11959665	A	G	SNP	LPIN1	ENST00000449576	human	ensembl	69_37n	1	known	missense	c.2605	p.K869E	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	89	0	0	99	28	22.05	-	-	-	G	11959665	A	G	11959665	3	3	862	1	0	0	0	0	1	0	0	0	8984	131	5	5	2416	5	LPIN1	2	11959665	Missense_Mutation	SNP	A	TCGA-E9-A22A-01A-11D-A159-09		11959665	231239708	8	71019										
STAB1	0	genome.wustl.edu	37	chr3	52544484	52544484	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	ctggacatgagaggtggctgCcacaccgatgccctctgcag	13	13	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	3	52544484	52544484	C	A	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	nonsense	c.2748	p.C916*	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	34	0	0	100	25	19.53	-	-	-	A	52544484	C	A	52544484	4	1	862	1	0	0	0	0	0	1	0	0	15328	747	26	4	2846	4	STAB1	3	52544484	Nonsense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		52544484	145477946	9	71020										
SLC7A14	0	genome.wustl.edu	37	chr3	170184915	170184915	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	tgtttgtgtttgcttttgctCttcgctttgctacttgtccg	9	9	1	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	3	170184915	170184915	C	G	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	missense	c.2244	p.K748N	1.000	NULL	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	25	0	0	29	9	23.68	-	-	-	G	170184915	C	G	170184915	3	3	862	1	0	0	0	0	1	0	0	0	14785	912	32	2	75	2	SLC7A14	3	170184915	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	117640431	170184915	27837515	10	71021										
ANK2	0	genome.wustl.edu	37	chr4	114153390	114153390	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aaaatatttgctggaaaatgGagctaatcagagcactgcta	9	6	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	4	114153390	114153390	G	C	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.458	p.G153A	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	82	0	0	118	29	19.73	-	-	-	C	114153390	G	C	114153390	3	2	862	1	0	0	0	0	1	0	0	0	621	1174	41	2	501	2	ANK2	4	114153390	Missense_Mutation	SNP	G	TCGA-E9-A22A-01A-11D-A159-09		114153390	77000886	11	71022										
MMD2	0	genome.wustl.edu	37	chr7	4949608	4949608	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	ggaagacaagccgtgccggcCttaggacatgcctccccacg	12	15	0	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	7	4949608	4949608	C	G	SNP	MMD2	ENST00000404774	human	ensembl	69_37n	-1	known	missense	c.513	p.K171N	0.228	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297	14	0	0	56	12	17.65	-	-	-	G	4949608	C	G	4949608	3	3	862	1	0	0	0	0	1	0	0	0	9715	680	24	4	307	4	MMD2	7	4949608	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		4949608	154189055	12	71023										
AVL9	0	genome.wustl.edu	37	chr7	32590994	32590994	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	ttcaactcattacacatgcaTattttgaagagaaggatttt	6	6	2	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	7	32590994	32590994	T	G	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	1	known	missense	c.421	p.Y141D	1.000	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	74	0	0	93	18	16.22	-	-	-	G	32590994	T	G	32590994	3	3	862	1	0	0	0	0	1	0	0	0	1232	1406	49	5	439	5	AVL9	7	32590994	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09	27641386	32590994	126547669	13	71024										
SLC39A4	0	genome.wustl.edu	37	chr8	145640174	145640174	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aggtgcaggctccactcagcTgctgttggagcagggcaggg	17	10	1	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	8	145640174	145640174	T	A	SNP	SLC39A4	ENST00000301305	human	ensembl	69_37n	-1	known	missense	c.911	p.Q304L	0.998	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804	11	0	0	24	22	47.83	-	-	-	A	145640174	T	A	145640174	3	1	862	1	0	0	0	0	1	0	0	0	14709	1580	55	5	1064	5	SLC39A4	8	145640174	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09		145640174	723848	14	71025										
CUBN	0	genome.wustl.edu	37	chr10	16967642	16967642	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	tggaatctggaaaggctgttCaaaatggacagcaatggtca	12	6	3	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	10	16967642	16967642	C	T	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.6403	p.E2135K	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	42	0	0	75	9	10.71	-	-	-	T	16967642	C	T	16967642	3	4	862	1	0	0	0	0	1	0	0	0	4082	835	29	2	4572	2	CUBN	10	16967642	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		16967642	118567105	15	71026										
GALNTL4	0	genome.wustl.edu	37	chr11	11470443	11470443	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	gcaaacagagaggagtctgtGaagggctcggcctctgcctc	14	11	2	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	11	11470443	11470443	G	T	SNP	GALNTL4	ENST00000227756	human	ensembl	69_37n	-1	known	missense	c.276	p.F92L	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL4	HGNC	ENSG00000110328	16	0	0	16	6	27.27	-	-	-	T	11470443	G	T	11470443	3	4	862	1	0	0	0	0	1	0	0	0	6273	1281	45	2	1587	2	GALNTL4	11	11470443	Missense_Mutation	SNP	G	TCGA-E9-A22A-01A-11D-A159-09		11470443	123536073	16	71027										
CTNND1	0	genome.wustl.edu	37	chr11	57569469	57569469	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aagactgacgtgcggaagctCaagggcatcccagtactggt	13	10	1	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	11	57569469	57569469	C	G	SNP	CTNND1	ENST00000399050	human	ensembl	69_37n	1	known	silent	c.1221	p.L407	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	42	0	0	59	8	11.94	-	-	-	G	57569469	C	G	57569469	2	3	862	1	0	0	0	0	0	0	0	1	4051	813	29	2		2	CTNND1	11	57569469	Silent	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	46099026	57569469	77437047	17	71028										
CCDC82	0	genome.wustl.edu	37	chr11	96117385	96117387	+	In_Frame_Del	DEL	TCT	TCT	-													0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	ttctttttcctcgcttgatgTcttcttcttctaaatcatcc							TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	11	96117385	96117387	TCT	-	DEL	CCDC82	ENST00000278520	human	ensembl	69_37n	-1	known	in_frame_del	c.527_525	p.E175in_frame_del	0.005:0.012:0.029	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231	139	0	0	196	39	16.46	-	-	-	-	96117387	TCT	-	96117385	7	5	862	1	0	1	0	1	0	0	0	0	2883	1667	58	0	1135	0	CCDC82	11	96117385	In_Frame_Del	DEL	TCT	TCGA-E9-A22A-01A-11D-A159-09	38547916	96117385	38889131	18	71029										
OR10G7	0	genome.wustl.edu	37	chr11	123909447	123909447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	gtggaaggagatagtcctgcCgcttggggacaccaaggtca	15	9	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	11	123909447	123909447	C	T	SNP	OR10G7	ENST00000330487	human	ensembl	69_37n	-1	known	missense	c.262	p.G88S	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634	116	0	0	235	30	11.32	-	-	-	T	123909447	C	T	123909447	3	4	862	1	0	0	0	0	1	0	0	0	10975	652	23	1	677	1	OR10G7	11	123909447	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09	27792062	123909447	11097069	19	71030										
KSR2	0	genome.wustl.edu	37	chr12	117962830	117962830	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	acctcgccatgccagcggccGtggtacacttgcccaaagcg	11	16	0	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	12	117962830	117962830	G	A	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	silent	c.2046	p.H682	0.943	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	54	0	0	80	11	12.09	-	-	-	A	117962830	G	A	117962830	2	1	862	1	0	0	0	0	0	0	0	1	8636	1136	40	1		1	KSR2	12	117962830	Silent	SNP	G	TCGA-E9-A22A-01A-11D-A159-09		117962830	15889065	20	71031										
VPS13C	0	genome.wustl.edu	37	chr15	62202485	62202485	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aaagtttgcctgacaaacttTctggccaaaatggaaggcac	9	9	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	15	62202485	62202485	T	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.8735	p.E2912V	1.000	pfam_VPSAP	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	36	0	0	34	13	27.66	-	-	-	A	62202485	T	A	62202485	3	1	862	1	0	0	0	0	1	0	0	0	17288	1783	62	5	2642	5	VPS13C	15	62202485	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09		62202485	40328907	21	71032										
KIAA1024	0	genome.wustl.edu	37	chr15	79748798	79748798	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aatggcggggctgccaaggaGaagctgcccacgggccgcca	16	13	0	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	15	79748798	79748798	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	69_37n	1	known	silent	c.309	p.E103	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	30	0	0	48	6	11.11	-	-	-	A	79748798	G	A	79748798	2	1	862	1	0	0	0	0	0	0	0	1	8257	933	33	2		2	KIAA1024	15	79748798	Silent	SNP	G	TCGA-E9-A22A-01A-11D-A159-09	17546313	79748798	22782594	22	71033										
GTF3C1	0	genome.wustl.edu	37	chr16	27517273	27517273	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	agctatgtcaccactgttgcTgtccgcacagtgggagacaa	11	11	1	1			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	16	27517273	27517273	T	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	missense	c.1717	p.S573C	0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	49	0	0	95	15	13.51	-	-	-	A	27517273	T	A	27517273	3	1	862	1	0	0	0	0	1	0	0	0	6923	1580	55	5	4724	5	GTF3C1	16	27517273	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09		27517273	62837480	23	71034										
MYLK3	0	genome.wustl.edu	37	chr16	46764603	46764603	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aaaggagctggtggggccggActgtcatctgctcaggaggc	17	9	3	0			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	16	46764603	46764603	A	G	SNP	MYLK3	ENST00000394809	human	ensembl	69_37n	-1	known	silent	c.1470	p.S490	0.978	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795	29	0	0	67	20	22.99	-	-	-	G	46764603	A	G	46764603	2	3	862	1	0	0	0	0	0	0	0	1	10130	272	10	5		5	MYLK3	16	46764603	Silent	SNP	A	TCGA-E9-A22A-01A-11D-A159-09	19247330	46764603	43590150	24	71035										
ZNF431	0	genome.wustl.edu	37	chr19	21365903	21365903	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	cttcaaatgtgaagaatgtgGcaaagcttttaagcagtcct	9	7	1	2			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	19	21365903	21365903	G	C	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.797	p.G266A	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	15	0	0	16	7	30.43	-	-	-	C	21365903	G	C	21365903	3	2	862	1	0	0	0	0	1	0	0	0	18001	1203	42	4	815	4	ZNF431	19	21365903	Missense_Mutation	SNP	G	TCGA-E9-A22A-01A-11D-A159-09		21365903	37763080	25	71036										
DIP2A	0	genome.wustl.edu	37	chr21	47931375	47931375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	aaagcctgagggaagcgagaCgagtgtgctgagaggggagc	19	6	0	3			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	21	47931375	47931375	C	G	SNP	DIP2A	ENST00000318711	human	ensembl	69_37n	1	known	missense	c.953	p.T318R	0.985	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	21	0	0	28	12	30	-	-	-	G	47931375	C	G	47931375	3	3	862	1	0	0	0	0	1	0	0	0	4563	536	19	3	980	3	DIP2A	21	47931375	Missense_Mutation	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		47931375	198520	26	71037										
BHLHB9	0	genome.wustl.edu	37	chrX	102004787	102004787	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	cgttttgattctgacccctgCatccagaccatagatgagat	8	11	1	5			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	X	102004787	102004787	C	T	SNP	BHLHB9	ENST00000361229	human	ensembl	69_37n	1	known	silent	c.864	p.C288	0.567	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	16	0	0	35	13	27.08	-	-	-	T	102004787	C	T	102004787	2	4	862	1	0	0	0	0	0	0	0	1	1425	718	25	4		4	BHLHB9	23	102004787	Silent	SNP	C	TCGA-E9-A22A-01A-11D-A159-09		102004787	53265773	27	71038										
MUM1L1	0	genome.wustl.edu	37	chrX	105450851	105450851	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.214285714285714	6	0.0463483299013027	3.07065217391304	3.50931677018634	2.72946859903382	1	1	4	gcatctcactaatttgtgacTacagagttagaataggttgt	9	6	1	3			TCGA-E9-A22A-01A-11D-A159-09	TCGA-E9-A22A-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	25bf7831-6878-4bac-b23d-e94a555b2232	8ecfa244-c94c-4b57-8b3b-a1035c270042	X	105450851	105450851	T	G	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	missense	c.1426	p.Y476D	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	49	0	0	64	16	20	-	-	-	G	105450851	T	G	105450851	3	3	862	1	0	0	0	0	1	0	0	0	10058	1522	53	5	1428	5	MUM1L1	23	105450851	Missense_Mutation	SNP	T	TCGA-E9-A22A-01A-11D-A159-09	3446064	105450851	49819709	28	71039										
PKLR	0	genome.wustl.edu	37	chr1	155261573	155261573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	caatgccaaattgcacccggCgatctacatcatctgcccag	7	15	3	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	155261573	155261573	C	T	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.1592	p.R531H	0.999	pfam_Pyrv_Knase_C,superfamily_Pyrv_Knase_C,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	42	0	0	34	15	30.61	-	-	-	T	155261573	C	T	155261573	3	4	863	1	0	0	0	0	1	0	0	0	12050	768	27	1	140	1	PKLR	1	155261573	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		155261573	93989048	1	71040										
KCNH1	0	genome.wustl.edu	37	chr1	210948878	210948878	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gaacacatctccaaacacgtCtccttttcctaaggagagaa	6	12	2	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	210948878	210948878	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.1924	p.D642N	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	59	0	0	34	9	20.93	-	-	-	T	210948878	C	T	210948878	3	4	863	1	0	0	0	0	1	0	0	0	8085	913	32	2	1053	2	KCNH1	1	210948878	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	55687305	210948878	38301743	2	71041										
GALNT2	0	genome.wustl.edu	37	chr1	230313974	230313974	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gttcccctaggaggactggaAtgaaattgaccccattaaaa	9	9	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	230313974	230313974	A	G	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	1	known	missense	c.137	p.N46S	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	78	0	0	51	17	25	-	-	-	G	230313974	A	G	230313974	3	3	863	1	0	0	0	0	1	0	0	0	6263	101	4	5	143	5	GALNT2	1	230313974	Missense_Mutation	SNP	A	TCGA-E9-A22B-01A-11D-A159-09	19365096	230313974	18936647	3	71042										
THSD7B	0	genome.wustl.edu	37	chr2	137928463	137928463	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tccctgatcatggaaaatgtGgcctgggacatcgtattctg	11	9	2	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	137928463	137928463	G	C	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.1678	p.G560R	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	91	0	0	57	15	20.83	-	-	-	C	137928463	G	C	137928463	3	2	863	1	0	0	0	0	1	0	0	0	15975	1348	47	4	1607	4	THSD7B	2	137928463	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		137928463	105270910	4	71043										
NUP210	0	genome.wustl.edu	37	chr3	13364872	13364872	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ggaggctgtagcctcctggaAgctggtctggatggggtgga	19	7	1	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	13364872	13364872	A	C	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	missense	c.4705	p.F1569V	0.609	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	63	0	0	34	15	30.61	-	-	-	C	13364872	A	C	13364872	3	2	863	1	0	0	0	0	1	0	0	0	10833	72	3	5	986	5	NUP210	3	13364872	Missense_Mutation	SNP	A	TCGA-E9-A22B-01A-11D-A159-09		13364872	184657558	5	71044										
SPINK8	0	genome.wustl.edu	37	chr3	48351420	48351420	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tccatcatacagtttagttaTgttaagcccttcaaatctga	5	9	3	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	48351420	48351420	T	C	SNP	SPINK8	ENST00000434006	human	ensembl	69_37n	-1	known	missense	c.256	p.I86V	0.033	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	-	no_errors	SPINK8	HGNC	ENSG00000229453	80	0	0	47	11	18.97	-	-	-	C	48351420	T	C	48351420	3	2	863	1	0	0	0	0	1	0	0	0	15156	1464	51	5	45	5	SPINK8	3	48351420	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	34986548	48351420	149671010	6	71045										
MED12L	0	genome.wustl.edu	37	chr3	151134206	151134206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	agcaatgcagccccagcagcCcttggtaaggcctgttgttt	11	12	0	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	151134206	151134206	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.6299	p.P2100L	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	39	0	0	19	16	45.71	-	-	-	T	151134206	C	T	151134206	3	4	863	1	0	0	0	0	1	0	0	0	9500	623	22	4	6461	4	MED12L	3	151134206	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	102782786	151134206	46888224	7	71046										
GLRA3	0	genome.wustl.edu	37	chr4	175598272	175598272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ctgaactctgtgtagtcatcGttagcacagtggttatcccc	9	11	2	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	4	175598272	175598272	G	A	SNP	GLRA3	ENST00000274093	human	ensembl	69_37n	-1	known	missense	c.884	p.T295M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451	57	0	0	54	16	22.86	-	-	-	A	175598272	G	A	175598272	3	1	863	1	0	0	0	0	1	0	0	0	6508	1145	40	1	526	1	GLRA3	4	175598272	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		175598272	15556004	8	71047										
ADAMTS12	0	genome.wustl.edu	37	chr5	33614429	33614429	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	catcattgtcaaggccatctTtctggattgtgtactcatac	7	10	5	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	5	33614429	33614429	T	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	69_37n	-1	known	missense	c.2441	p.K814T	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	152	0	0	84	32	27.59	-	-	-	G	33614429	T	G	33614429	3	3	863	1	0	0	0	0	1	0	0	0	257	1841	64	5	2379	5	ADAMTS12	5	33614429	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09		33614429	147300831	9	71048										
RNF182	0	genome.wustl.edu	37	chr6	13977576	13977576	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ttgagacgtgcctgccagatGatgaagttagtagcctgccc	12	10	0	4			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	13977576	13977576	G	A	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	1	known	missense	c.226	p.D76N	0.995	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	92	0	0	54	34	38.64	-	-	-	A	13977576	G	A	13977576	3	1	863	1	0	0	0	0	1	0	0	0	13552	1290	45	2	228	2	RNF182	6	13977576	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		13977576	157137491	10	71049										
KCNK16	0	genome.wustl.edu	37	chr6	39284658	39284658	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	acatggctgaagaccatgggTgggaagatgagaatgaccag	15	6	0	5			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	39284658	39284658	T	G	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	silent	c.561	p.P187	0.495	pfam_Ion_trans_2	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	38	0	0	38	6	13.33	-	-	-	G	39284658	T	G	39284658	2	3	863	1	0	0	0	0	0	0	0	1	8117	1683	59	5		5	KCNK16	6	39284658	Silent	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	25307082	39284658	131830409	11	71050										
TFEB	0	genome.wustl.edu	37	chr6	41658742	41658742	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gccagaacaggccctaccttCaacacctccccaggcacagg	8	18	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	41658742	41658742	C	T	SNP	TFEB	ENST00000230323	human	ensembl	69_37n	-1	known	silent	c.210	p.L70	0.968	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFEB	HGNC	ENSG00000112561	34	0	0	21	7	25	-	-	-	T	41658742	C	T	41658742	2	4	863	1	0	0	0	0	0	0	0	1	15896	825	29	2		2	TFEB	6	41658742	Silent	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	2374084	41658742	129456325	12	71051										
EYS	0	genome.wustl.edu	37	chr6	64487930	64487930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tccactctctatgcatgtccCaccattgccacatttcatta	3	15	2	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	64487930	64487930	C	T	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.7867	p.G2623R	0.975	smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	62	0	0	54	21	28	-	-	-	T	64487930	C	T	64487930	3	4	863	1	0	0	0	0	1	0	0	0	5369	594	21	4	1583	4	EYS	6	64487930	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	22829188	64487930	106627137	13	71052										
EPB41L2	0	genome.wustl.edu	37	chr6	131184781	131184781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gaacttaacttatttacctgGtcatgatcaatatctccatc	4	10	3	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	131184781	131184781	G	C	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.2907	p.D969E	0.998	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	133	0	0	125	15	10.64	-	-	-	C	131184781	G	C	131184781	3	2	863	1	0	0	0	0	1	0	0	0	5190	1252	44	4	118	4	EPB41L2	6	131184781	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09	66696851	131184781	39930286	14	71053										
RINT1	0	genome.wustl.edu	37	chr7	105205897	105205897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gaagctggatgtatacatctAccaagaagtaagtaagaata	9	5	1	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	105205897	105205897	A	G	SNP	RINT1	ENST00000257700	human	ensembl	69_37n	1	known	missense	c.2060	p.Y687C	1.000	pfam_RINT1_TIP1	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249	104	0	0	58	17	22.67	-	-	-	G	105205897	A	G	105205897	3	3	863	1	0	0	0	0	1	0	0	0	13462	391	14	5	2110	5	RINT1	7	105205897	Missense_Mutation	SNP	A	TCGA-E9-A22B-01A-11D-A159-09		105205897	53932766	15	71054										
TMEM168	0	genome.wustl.edu	37	chr7	112424725	112424725	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gttttttcccatcttacgtaTagacctaagcatatagcaac	5	10	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	112424725	112424725	T	C	SNP	TMEM168	ENST00000312814	human	ensembl	69_37n	-1	known	silent	c.156	p.L52	0.921	NULL	superfamily_ConA-like_lec_gl	-	no_errors	TMEM168	HGNC	ENSG00000146802	33	0	0	10	13	56.52	-	-	-	C	112424725	T	C	112424725	2	2	863	1	0	0	0	0	0	0	0	1	16178	1393	49	5		5	TMEM168	7	112424725	Silent	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	7218828	112424725	46713938	16	71055										
ZFHX4	0	genome.wustl.edu	37	chr8	77765416	77765416	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ccattatgatgcaacctgtgCaacaccctgcgcttcctccc	6	17	0	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	77765416	77765416	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.6259	p.Q2087K	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	37	0	0	46	6	11.54	-	-	-	A	77765416	C	A	77765416	3	1	863	1	0	0	0	0	1	0	0	0	17731	711	25	4	6293	4	ZFHX4	8	77765416	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		77765416	68598606	17	71056										
CSMD3	0	genome.wustl.edu	37	chr8	113988224	113988224	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tgagactcgtaacttgcactCgctgttcctcggaaagtcta	9	11	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	113988224	113988224	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.1184	p.R395Q	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	137	1	0.72	195	48	19.75	-	-	-	T	113988224	C	T	113988224	3	4	863	1	0	0	0	0	1	0	0	0	3978	884	31	1	10199	1	CSMD3	8	113988224	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	36222808	113988224	32375798	18	71057										
PRKCQ	0	genome.wustl.edu	37	chr10	6520982	6520982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ggaatgtacaaaacatgtgcGtcagaaacggatgctcccag	11	9	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	6520982	6520982	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.1325	p.T442M	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	129	1	0.77	87	31	26.05	-	-	-	A	6520982	G	A	6520982	3	1	863	1	0	0	0	0	1	0	0	0	12596	1145	40	1	823	1	PRKCQ	10	6520982	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		6520982	129013765	19	71058										
AGAP4	0	genome.wustl.edu	37	chr10	46342649	46342649	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	acagtcacctcagcaggctgTacagcagcagccatgggcgc	12	14	2	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	46342649	46342649	T	C	SNP	AGAP4	ENST00000448048	human	ensembl	69_37n	-1	known	silent	c.147	p.V49	0.177	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP4	HGNC	ENSG00000188234	12	0	0	5	3	37.5	-	-	-	C	46342649	T	C	46342649	2	2	863	1	0	0	0	0	0	0	0	1	370	1625	57	5		5	AGAP4	10	46342649	Silent	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	39821667	46342649	89192098	20	71059										
LZTS2	0	genome.wustl.edu	37	chr10	102763412	102763412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gacgcagctgtttgggggccCtgcctcctcctcctcctctt	10	17	1	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	102763412	102763412	C	T	SNP	LZTS2	ENST00000370220	human	ensembl	69_37n	1	known	missense	c.557	p.P186L	1.000	NULL	pfam_Fez1	-	no_errors	LZTS2	HGNC	ENSG00000107816	25	0	0	7	8	53.33	-	-	-	T	102763412	C	T	102763412	3	4	863	1	0	0	0	0	1	0	0	0	9206	681	24	4	563	4	LZTS2	10	102763412	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	56420763	102763412	32771335	21	71060										
TCN1	0	genome.wustl.edu	37	chr11	59626616	59626616	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tcttttttctcagacagaatCttttctaccagtgactttgt	5	9	4	3			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	11	59626616	59626616	C	G	SNP	TCN1	ENST00000257264	human	ensembl	69_37n	-1	known	missense	c.681	p.K227N	0.239	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827	157	0	0	71	42	37.17	-	-	-	G	59626616	C	G	59626616	3	3	863	1	0	0	0	0	1	0	0	0	15801	912	32	2	640	2	TCN1	11	59626616	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		59626616	75379900	22	71061										
CD248	0	genome.wustl.edu	37	chr11	66083729	66083729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gccggaagccctcagtgcagCggcaggacacgtgaccatcc	13	15	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	11	66083729	66083729	C	T	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	missense	c.770	p.R257H	1.000	smart_EGF-like	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	37	0	0	25	7	21.21	-	-	-	T	66083729	C	T	66083729	3	4	863	1	0	0	0	0	1	0	0	0	3018	768	27	1	1507	1	CD248	11	66083729	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	6457113	66083729	68922787	23	71062										
LEPREL2	0	genome.wustl.edu	37	chr12	6948564	6948564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ttccccagagccccctagccGcaggcaccagagggtccaag	11	17	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	6948564	6948564	G	A	SNP	LEPREL2	ENST00000396725	human	ensembl	69_37n	1	known	missense	c.2147	p.R716H	0.001	NULL	smart_Pro_4_hyd_alph	-	no_errors	LEPREL2	HGNC	ENSG00000110811	41	0	0	23	11	32.35	-	-	-	A	6948564	G	A	6948564	3	1	863	1	0	0	0	0	1	0	0	0	8785	1087	38	1	2207	1	LEPREL2	12	6948564	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		6948564	126903331	24	71063										
GUCY2C	0	genome.wustl.edu	37	chr12	14798208	14798208	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	atcttaaactcccaatccatGaatgtgccatcagggtagga	8	10	2	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	14798208	14798208	G	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	silent	c.1752	p.F584	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	99	0	0	49	20	28.99	-	-	-	A	14798208	G	A	14798208	2	1	863	1	0	0	0	0	0	0	0	1	6947	1281	45	2		2	GUCY2C	12	14798208	Silent	SNP	G	TCGA-E9-A22B-01A-11D-A159-09	7849644	14798208	119053687	25	71064										
CNTN1	0	genome.wustl.edu	37	chr12	41419093	41419093	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gggcctgcaatagtgcagggTgtggacctccaagtgacatg	15	9	0	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	41419093	41419093	T	A	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	1	known	missense	c.2665	p.C889S	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	47	0	0	31	5	13.89	-	-	-	A	41419093	T	A	41419093	3	1	863	1	0	0	0	0	1	0	0	0	3670	1696	59	5	2743	5	CNTN1	12	41419093	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	26620885	41419093	92432802	26	71065										
NR2C1	0	genome.wustl.edu	37	chr12	95445620	95445620	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	taagctttcaatcatagacaTttcattactattttgagaaa	4	6	3	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	95445620	95445620	T	G	SNP	NR2C1	ENST00000333003	human	ensembl	69_37n	-1	known	missense	c.883	p.M295L	0.115	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2C1	HGNC	ENSG00000120798	87	0	0	61	23	27.38	-	-	-	G	95445620	T	G	95445620	3	3	863	1	0	0	0	0	1	0	0	0	10695	1493	52	5	1034	5	NR2C1	12	95445620	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	54026527	95445620	38406275	27	71066										
OR11G2	0	genome.wustl.edu	37	chr14	20666089	20666089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tctggttcttgattcctatcGtcaacatctcccaaatgtcc	5	13	4	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	20666089	20666089	G	A	SNP	OR11G2	ENST00000357366	human	ensembl	69_37n	1	known	missense	c.595	p.V199I	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832	121	0	0	84	21	19.81	-	-	-	A	20666089	G	A	20666089	3	1	863	1	0	0	0	0	1	0	0	0	10998	1145	40	1	597	1	OR11G2	14	20666089	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		20666089	86683451	28	71067										
KCNH5	0	genome.wustl.edu	37	chr14	63174294	63174294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gacactaaaaatatcctgacAtggtatctgggggggtactt	11	7	1	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	63174294	63174294	A	G	SNP	KCNH5	ENST00000322893	human	ensembl	69_37n	-1	known	missense	c.2899	p.C967R	0.800	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015	79	0	0	22	18	45	-	-	-	G	63174294	A	G	63174294	3	3	863	1	0	0	0	0	1	0	0	0	8089	217	8	5	71	5	KCNH5	14	63174294	Missense_Mutation	SNP	A	TCGA-E9-A22B-01A-11D-A159-09	42508205	63174294	44175246	29	71068										
FLRT2	0	genome.wustl.edu	37	chr14	86089456	86089456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gtccagccatgagcagacgaCgtcccacagcatgggctccc	11	16	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	86089456	86089456	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	1	known	missense	c.1598	p.T533M	0.980	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	36	0	0	8	12	60	-	-	-	T	86089456	C	T	86089456	3	4	863	1	0	0	0	0	1	0	0	0	5985	536	19	1	1600	1	FLRT2	14	86089456	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	22915162	86089456	21260084	30	71069										
HDGFRP3	0	genome.wustl.edu	37	chr15	83826259	83826259	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tactctatcaccttcttcctCactgcttgcatctgcagtat	4	14	5	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	15	83826259	83826259	C	T	SNP	HDGFRP3	ENST00000299633	human	ensembl	69_37n	-1	known	missense	c.367	p.E123K	1.000	NULL	pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	RP11-382A20.3	Clone_based_vega_gene	ENSG00000166503	172	0	0	136	56	29.17	-	-	-	T	83826259	C	T	83826259	3	4	863	1	0	0	0	0	1	0	0	0	7072	835	29	2	256	2	HDGFRP3	15	83826259	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		83826259	18705133	31	71070										
NOXO1	0	genome.wustl.edu	37	chr16	2029885	2029885	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	caggcggtctgccggtcttcGttctccaccagccaccagcc	10	18	3	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	2029885	2029885	G	A	SNP	NOXO1	ENST00000397280	human	ensembl	69_37n	-1	known	silent	c.621	p.N207	0.955	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NOXO1	HGNC	ENSG00000196408	16	0	0	12	7	36.84	-	-	-	A	2029885	G	A	2029885	2	1	863	1	0	0	0	0	0	0	0	1	10633	1136	40	1		1	NOXO1	16	2029885	Silent	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		2029885	88324868	32	71071										
ITGAX	0	genome.wustl.edu	37	chr16	31391361	31391361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	cccagcatctgacttcctggCgcacattcagaagaatcccg	8	15	2	3			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	31391361	31391361	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	1	known	missense	c.3035	p.A1012V	0.002	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	30	0	0	26	13	32.5	-	-	-	T	31391361	C	T	31391361	3	4	863	1	0	0	0	0	1	0	0	0	7943	768	27	1	3137	1	ITGAX	16	31391361	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	29361476	31391361	58963392	33	71072										
PRKAR1A	0	genome.wustl.edu	37	chr17	66511664	66511664	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ttgtgcagttgtgcactgctCgacctgagagacccatggca	12	11	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	17	66511664	66511664	C	T	SNP	PRKAR1A	ENST00000358598	human	ensembl	69_37n	1	known	nonsense	c.124	p.R42*	0.544	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946	63	0	0	61	24	28.24	-	-	-	T	66511664	C	T	66511664	4	4	863	1	0	0	0	0	0	1	0	0	12584	876	31	1	126	1	PRKAR1A	17	66511664	Nonsense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		66511664	14683546	34	71073										
DSC2	0	genome.wustl.edu	37	chr18	28667707	28667707	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gtagttatcattttcatcctCtattttgattattaggggca	7	6	3	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	18	28667707	28667707	C	T	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.700	p.E234K	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	160	0	0	71	29	29	-	-	-	T	28667707	C	T	28667707	3	4	863	1	0	0	0	0	1	0	0	0	4801	922	32	2	2089	2	DSC2	18	28667707	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09		28667707	49409541	35	71074										
KIAA1468	0	genome.wustl.edu	37	chr18	59895751	59895751	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	aaagagaattccccaaattcAttccccaggagagaaagaga	8	9	1	3			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	18	59895751	59895751	A	T	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	silent	c.1368	p.S456	0.533	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	74	0	0	57	21	26.92	-	-	-	T	59895751	A	T	59895751	2	4	863	1	0	0	0	0	0	0	0	1	8288	204	8	5		5	KIAA1468	18	59895751	Silent	SNP	A	TCGA-E9-A22B-01A-11D-A159-09	31228044	59895751	18181497	36	71075										
ELOF1	0	genome.wustl.edu	37	chr19	11664586	11664586	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gattggccgcctcgcaggcgTctatccaatcactgtacaca	9	14	2	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	11664586	11664586	T	A	SNP	ELOF1	ENST00000252445	human	ensembl	69_37n	-1	known	missense	c.227	p.D76V	1.000	pfam_DUF701_Zn-bd	pfam_DUF701_Zn-bd	-	no_errors	ELOF1	HGNC	ENSG00000130165	35	0	0	14	11	44	-	-	-	A	11664586	T	A	11664586	3	1	863	1	0	0	0	0	1	0	0	0	5109	1667	58	5	28	5	ELOF1	19	11664586	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09		11664586	47464397	37	71076										
CYP2A13	0	genome.wustl.edu	37	chr19	41596358	41596358	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	agccgcacagtctccaatgtCatcagctccattgtctttgg	8	13	4	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	41596358	41596358	C	A	SNP	CYP2A13	ENST00000330436	human	ensembl	69_37n	1	known	silent	c.543	p.V181	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838	186	0	0	162	47	22.49	-	-	-	A	41596358	C	A	41596358	2	1	863	1	0	0	0	0	0	0	0	1	4192	813	29	2		2	CYP2A13	19	41596358	Silent	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	29931772	41596358	17532625	38	71077										
ZNF677	0	genome.wustl.edu	37	chr19	53740447	53740447	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gtacatttgtaaggtttctcTccagtatggattttcttatg	8	6	2	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	53740447	53740447	T	A	SNP	ZNF677	ENST00000333952	human	ensembl	69_37n	-1	known	silent	c.1533	p.G511	0.987	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	162	0	0	145	23	13.69	-	-	-	A	53740447	T	A	53740447	2	1	863	1	0	0	0	0	0	0	0	1	18180	1538	54	5		5	ZNF677	19	53740447	Silent	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	12144089	53740447	5388536	39	71078										
ZNF71	0	genome.wustl.edu	37	chr19	57132793	57132793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gaaccaggcagctggccagaGaggccgcggggagatgcagg	19	10	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	57132793	57132793	G	C	SNP	ZNF71	ENST00000328070	human	ensembl	69_37n	1	known	missense	c.138	p.E46D	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	32	0	0	33	17	34	-	-	-	C	57132793	G	C	57132793	3	2	863	1	0	0	0	0	1	0	0	0	18210	933	33	2	140	2	ZNF71	19	57132793	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09	3392346	57132793	1996190	40	71079										
ZNF773	0	genome.wustl.edu	37	chr19	58017951	58017951	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tctgaccagctcaggtgttcTcaagcaccaggtgactcaca	9	13	4	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	58017951	58017951	T	C	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	1	known	missense	c.488	p.L163P	0.022	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	64	0	0	41	17	29.31	-	-	-	C	58017951	T	C	58017951	3	2	863	1	0	0	0	0	1	0	0	0	18239	1551	54	5	502	5	ZNF773	19	58017951	Missense_Mutation	SNP	T	TCGA-E9-A22B-01A-11D-A159-09	885158	58017951	1111032	41	71080										
RBPJL	0	genome.wustl.edu	37	chr20	43940867	43940867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	tgtgagccccctaggaattcGgctgcgccaagaccctgtac	11	14	0	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	20	43940867	43940867	G	A	SNP	RBPJL	ENST00000343694	human	ensembl	69_37n	1	known	missense	c.451	p.G151S	0.999	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232	29	0	0	31	13	29.55	-	-	-	A	43940867	G	A	43940867	3	1	863	1	0	0	0	0	1	0	0	0	13245	1116	39	1	473	1	RBPJL	20	43940867	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		43940867	19084653	42	71081										
SLC12A5	0	genome.wustl.edu	37	chr20	44680441	44680441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	cggggggctgcagcacaacaCtgtgcttgttggctggcccc	15	13	0	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	20	44680441	44680441	C	G	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.2378	p.T793S	0.999	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	54	0	0	45	12	21.05	-	-	-	G	44680441	C	G	44680441	3	3	863	1	0	0	0	0	1	0	0	0	14475	565	20	4	2504	4	SLC12A5	20	44680441	Missense_Mutation	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	739574	44680441	18345079	43	71082										
C21orf91	0	genome.wustl.edu	37	chr21	19169225	19169225	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	gatgatgctgggggtttttaGaacattcagaatctgaatcc	11	6	2	4			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	21	19169225	19169225	G	A	SNP	C21orf91	ENST00000284881	human	ensembl	69_37n	-1	known	missense	c.338	p.S113F	0.998	pfam_EURL_prot	pfam_EURL_prot	-	no_errors	C21orf91	HGNC	ENSG00000154642	56	0	0	40	19	32.2	-	-	-	A	19169225	G	A	19169225	3	1	863	1	0	0	0	0	1	0	0	0	2154	942	33	2	567	2	C21orf91	21	19169225	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		19169225	28960670	44	71083										
HMOX1	0	genome.wustl.edu	37	chr22	35789489	35789489	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	cccgtggagactcccagaggGaagcccccactcaacacccg	10	18	1	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	22	35789489	35789489	G	A	SNP	HMOX1	ENST00000216117	human	ensembl	69_37n	1	known	silent	c.765	p.G255	0.000	superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX1	HGNC	ENSG00000100292	81	0	0	44	28	37.84	-	-	-	A	35789489	G	A	35789489	2	1	863	1	0	0	0	0	0	0	0	1	7294	1161	41	2		2	HMOX1	22	35789489	Silent	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		35789489	15515077	45	71084										
PRICKLE3	0	genome.wustl.edu	37	chrX	49034759	49034759	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	acgaagcactgtgggtgccaGcaggcacccaggcctgcacg	14	14	0	0			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	49034759	49034759	G	T	SNP	PRICKLE3	ENST00000376317	human	ensembl	69_37n	-1	known	nonsense	c.630	p.C210*	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211	55	0	0	39	18	31.03	-	-	-	T	49034759	G	T	49034759	4	4	863	1	0	0	0	0	0	1	0	0	12569	963	34	4	1233	4	PRICKLE3	23	49034759	Nonsense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09		49034759	106235801	46	71085										
LAS1L	0	genome.wustl.edu	37	chrX	64754390	64754390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	acaccgtgatgcggttaagcGcgtaccgctgcaacttatgg	12	11	0	1			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	64754390	64754390	G	A	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.206	p.A69V	0.998	pfam_Las1	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	32	0	0	30	4	11.76	-	-	-	A	64754390	G	A	64754390	3	1	863	1	0	0	0	0	1	0	0	0	8690	1087	38	1	2054	1	LAS1L	23	64754390	Missense_Mutation	SNP	G	TCGA-E9-A22B-01A-11D-A159-09	15719631	64754390	90516170	47	71086										
TMLHE	0	genome.wustl.edu	37	chrX	154743676	154743676	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.208333333333333	10	0.0293098126759529	2.4220623501199	2.90647482014389	2.32517985611511	0.0299731228523797	0.257137843417784	6	ctgatcctttctgccaacttCtctgtgtgctcttgagtggg	10	11	3	2			TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	154743676	154743676	C	T	SNP	TMLHE	ENST00000334398	human	ensembl	69_37n	-1	known	silent	c.609	p.E203	0.976	pfam_Taurine_dOase,tigrfam_Trimethyllysine_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_Trimethyllysine_dOase	-	no_errors	TMLHE	HGNC	ENSG00000185973	105	0	0	54	39	41.94	-	-	-	T	154743676	C	T	154743676	2	4	863	1	0	0	0	0	0	0	0	1	16327	912	32	2		2	TMLHE	23	154743676	Silent	SNP	C	TCGA-E9-A22B-01A-11D-A159-09	89989286	154743676	526884	48	71087										
DUSP10	0	genome.wustl.edu	37	chr1	221912851	221912851	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	aggttgccacagtgcagcagCtggcactgctgcatccacaa							TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	1	221912851	221912851	C	-	DEL	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	frame_shift_del	c.236	p.S79fs	1.000	superfamily_Blood-coag_inhib_Disintegrin	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	53	0	0	31	7	17.95	-	-	-	-	221912851	C	-	221912851	7	5	864	1	0	1	0	1	0	0	0	0	4845	797	28	0	1224	0	DUSP10	1	221912851	Frame_Shift_Del	DEL	C	TCGA-E9-A22D-01A-11D-A159-09		221912851	27337770	1	71088										
BRE	0	genome.wustl.edu	37	chr2	28521330	28521330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	atccgtacagccccagatggGatggaaatgaaatggccaaa	11	9	0	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	2	28521330	28521330	G	A	SNP	BRE	ENST00000344773	human	ensembl	69_37n	1	known	missense	c.1060	p.D354N	1.000	NULL	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	102	0	0	50	9	15.25	-	-	-	A	28521330	G	A	28521330	3	1	864	1	0	0	0	0	1	0	0	0	1517	1174	41	2	1098	2	BRE	2	28521330	Missense_Mutation	SNP	G	TCGA-E9-A22D-01A-11D-A159-09		28521330	214678043	2	71089										
XIRP1	0	genome.wustl.edu	37	chr3	39229655	39229655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tagctcatccctctggggggCactctgagagaagggcagtg	15	10	3	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	39229655	39229655	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.1282	p.A428T	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	55	0	0	17	7	29.17	-	-	-	T	39229655	C	T	39229655	3	4	864	1	0	0	0	0	1	0	0	0	17526	710	25	4	4253	4	XIRP1	3	39229655	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09		39229655	158792775	3	71090										
CCR2	0	genome.wustl.edu	37	chr3	46400009	46400009	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tcaccaagcgcttctgcaaaCaatgtccagttttctacagg	7	12	3	0			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	46400009	46400009	C	T	SNP	CCR2	ENST00000445132	human	ensembl	69_37n	1	known	nonsense	c.991	p.Q331*	0.980	prints_Chemokine_CCR2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	70	0	0	30	22	42.31	-	-	-	T	46400009	C	T	46400009	4	4	864	1	0	0	0	0	0	1	0	0	2970	479	17	4	993	4	CCR2	3	46400009	Nonsense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09	7170354	46400009	151622421	4	71091										
KCNMB2	0	genome.wustl.edu	37	chr3	178560711	178560711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tactatgtgagaggatccaaCggatcaatagataaatgcaa	9	6	1	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	178560711	178560711	C	T	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	1	known	missense	c.694	p.R232W	0.930	NULL	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	46	0	0	23	13	36.11	-	-	-	T	178560711	C	T	178560711	3	4	864	1	0	0	0	0	1	0	0	0	8129	527	19	1	708	1	KCNMB2	3	178560711	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09	132160702	178560711	19461719	5	71092										
FIP1L1	0	genome.wustl.edu	37	chr4	54319278	54319278	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	agagggagcgtgatcacagtCctacaccaagtgttttcaac	10	10	2	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	4	54319278	54319278	C	T	SNP	FIP1L1	ENST00000337488	human	ensembl	69_37n	1	known	missense	c.1477	p.P493S	0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	71	0	0	44	7	13.73	-	-	-	T	54319278	C	T	54319278	3	4	864	1	0	0	0	0	1	0	0	0	5942	855	30	2	1570	2	FIP1L1	4	54319278	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09		54319278	136834998	6	71093										
CNTNAP3	0	genome.wustl.edu	37	chr9	39103829	39103829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	gtcttaaaaaagaagcacacGtcagcagtgagttctccgtg	10	9	3	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	39103829	39103829	G	A	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	silent	c.2448	p.D816	0.993	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	55	0	0	28	4	12.5	-	-	-	A	39103829	G	A	39103829	2	1	864	1	0	0	0	0	0	0	0	1	3678	1136	40	1		1	CNTNAP3	9	39103829	Silent	SNP	G	TCGA-E9-A22D-01A-11D-A159-09		39103829	102109602	7	71094										
NTRK2	0	genome.wustl.edu	37	chr9	87285830	87285830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tcctggcatcgtggcatttcCgagattggagcctaacagtg	12	10	0	1			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	87285830	87285830	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	1	known	missense	c.167	p.P56L	0.998	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	58	0	0	49	8	14.04	-	-	-	T	87285830	C	T	87285830	3	4	864	1	0	0	0	0	1	0	0	0	10780	652	23	1	169	1	NTRK2	9	87285830	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09	48182001	87285830	53927601	8	71095										
DOLPP1	0	genome.wustl.edu	37	chr9	131848528	131848528	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	ggaggtcctcaccccgctgtTccccaggatagcagcctggt	12	15	1	0			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	131848528	131848528	T	G	SNP	DOLPP1	ENST00000372546	human	ensembl	69_37n	1	known	missense	c.572	p.F191C	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DOLPP1	HGNC	ENSG00000167130	38	0	0	27	12	30.77	-	-	-	G	131848528	T	G	131848528	3	3	864	1	0	0	0	0	1	0	0	0	4739	1783	62	5	594	5	DOLPP1	9	131848528	Missense_Mutation	SNP	T	TCGA-E9-A22D-01A-11D-A159-09	44562698	131848528	9364903	9	71096										
GATA3	0	genome.wustl.edu	37	chr10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	T													0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tcctccctgagccacatctcINSgcccttcagccactccagcc							TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	10	8115874	8115875	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	60	0	0	34	11	24.44	-	-	-	T	8115875	-	T	8115874	7	5	864	1	0	1	1	0	0	0	0	0	6305	893	31	0	1241	0	GATA3	10	8115874	Frame_Shift_Ins	INS	-	TCGA-E9-A22D-01A-11D-A159-09		8115874	127418873	10	71097										
WDR11	0	genome.wustl.edu	37	chr10	122618231	122618231	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	gttagcttctgctgatgtcaAtgggaagatcatcgtctggg	13	7	4	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	10	122618231	122618231	A	G	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	missense	c.275	p.N92S	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	119	0	0	52	27	34.18	-	-	-	G	122618231	A	G	122618231	3	3	864	1	0	0	0	0	1	0	0	0	17370	101	4	5	285	5	WDR11	10	122618231	Missense_Mutation	SNP	A	TCGA-E9-A22D-01A-11D-A159-09	114502357	122618231	12916516	11	71098										
TCEB3B	0	genome.wustl.edu	37	chr18	44560939	44560939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	ggcacacaaggggcgtttttCctggcgagacgatttgtgcc	14	10	0	1			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	18	44560939	44560939	C	G	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.697	p.E233Q	0.019	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	51	0	0	36	6	14.29	-	-	-	G	44560939	C	G	44560939	3	3	864	1	0	0	0	0	1	0	0	0	15777	864	30	2	1568	2	TCEB3B	18	44560939	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09		44560939	33516309	12	71099										
OR7C2	0	genome.wustl.edu	37	chr19	15052846	15052846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	cactttttttgtgatccttcCgaagtcctgaagctggcctg	9	11	0	2			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	15052846	15052846	C	T	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	silent	c.546	p.S182	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	244	0	0	154	21	12	-	-	-	T	15052846	C	T	15052846	2	4	864	1	0	0	0	0	0	0	0	1	11291	639	23	1		1	OR7C2	19	15052846	Silent	SNP	C	TCGA-E9-A22D-01A-11D-A159-09		15052846	44076137	13	71100										
ZSCAN5B	0	genome.wustl.edu	37	chr19	56703240	56703240	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	tgcctcctggacagtgcagcGaccctgggcaggatctgctg	14	13	1	0			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	56703240	56703240	G	A	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	silent	c.567	p.V189	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	42	0	0	25	5	16.67	-	-	-	A	56703240	G	A	56703240	2	1	864	1	0	0	0	0	0	0	0	1	18330	1045	37	1		1	ZSCAN5B	19	56703240	Silent	SNP	G	TCGA-E9-A22D-01A-11D-A159-09	41650394	56703240	2425743	14	71101										
PEG3	0	genome.wustl.edu	37	chr19	57328299	57328299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	cacagtccttacattcaaaaCgtttccctccaacctgactt	3	15	1	1			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	57328299	57328299	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1511	p.R504H	0.941	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	156	0	0	75	25	25	-	-	-	T	57328299	C	T	57328299	3	4	864	1	0	0	0	0	1	0	0	0	11793	536	19	1	3259	1	PEG3	19	57328299	Missense_Mutation	SNP	C	TCGA-E9-A22D-01A-11D-A159-09	625059	57328299	1800684	15	71102										
CDC42EP1	0	genome.wustl.edu	37	chr22	37964419	37964419	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	gcaaaccccccagcgcctgcTgcaaacccctcagcacctgc	7	21	1	0			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	22	37964419	37964419	T	C	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	1	known	silent	c.768	p.A256	0.000	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	17	0	0	17	5	22.73	-	-	-	C	37964419	T	C	37964419	2	2	864	1	0	0	0	0	0	0	0	1	3104	1567	55	5		5	CDC42EP1	22	37964419	Silent	SNP	T	TCGA-E9-A22D-01A-11D-A159-09		37964419	13340147	16	71103										
STARD8	0	genome.wustl.edu	37	chrX	67935135	67935135	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0588235294117647	1	0.99043758096535	0.675	4.05	0	1	1	0	ttgcttctctctgccatacaGaaggttcgtttcccctggat	8	12	2	1			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	X	67935135	67935135	G	C	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	1	known	splice_site	c.152-1	e4-1	1.000	-	-	-	no_errors	STARD8	HGNC	ENSG00000130052	166	0	0	87	10	10.31	-	-	-	C	67935135	G	C	67935135	5	2	864	1	0	0	0	0	0	0	1	0	15354	956	33	2	165	2	STARD8	23	67935135	Splice_Site	SNP	G	TCGA-E9-A22D-01A-11D-A159-09		67935135	87335425	17	71104										
NPHP4	0	genome.wustl.edu	37	chr1	5923388	5923388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tcctcatggtcattgatgtaGatcaggatctcctcctcacc	7	13	5	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	5923388	5923388	G	C	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.4218	p.I1406M	0.999	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	57	0	0	90	11	10.89	-	-	-	C	5923388	G	C	5923388	3	2	865	1	0	0	0	0	1	0	0	0	10653	932	33	2	66	2	NPHP4	1	5923388	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		5923388	243327233	1	71105										
CROCC	0	genome.wustl.edu	37	chr1	17264148	17264148	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	aactccagagtgacagagctGggcctggcagtgaagcgtct	14	10	1	4			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	17264148	17264148	G	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.1206	p.L402	0.952	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	46	0	0	46	14	23.33	-	-	-	C	17264148	G	C	17264148	2	2	865	1	0	0	0	0	0	0	0	1	3923	1335	47	4		4	CROCC	1	17264148	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	11340760	17264148	231986473	2	71106										
CDA	0	genome.wustl.edu	37	chr1	20944945	20944945	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cagctttgcctcttttccagTttggcaccaactggcccgtg	9	14	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	20944945	20944945	T	G	SNP	CDA	ENST00000375071	human	ensembl	69_37n	1	known	missense	c.325	p.F109V	1.000	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like,tigrfam_Cyt_deam_tetra	pfam_CMP_dCMP_Zn-bd,pfam_Cyd/dCyd_deaminase_Zn-bd,superfamily_Cytidine_deaminase-like,tigrfam_Cyt_deam_tetra	-	no_errors	CDA	HGNC	ENSG00000158825	17	0	0	21	5	19.23	-	-	-	G	20944945	T	G	20944945	3	3	865	1	0	0	0	0	1	0	0	0	3081	1739	60	5	339	5	CDA	1	20944945	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	3680797	20944945	228305676	3	71107										
TCEB3	0	genome.wustl.edu	37	chr1	24075528	24075528	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cagctattgaaatatttgaaGaaactctccaccctgcctat	5	11	1	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	24075528	24075528	G	A	SNP	TCEB3	ENST00000418390	human	ensembl	69_37n	1	known	silent	c.171	p.K57	1.000	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom_cyclin-like	-	no_errors	TCEB3	HGNC	ENSG00000011007	74	0	0	62	10	13.89	-	-	-	A	24075528	G	A	24075528	2	1	865	1	0	0	0	0	0	0	0	1	15776	933	33	2		2	TCEB3	1	24075528	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	3130583	24075528	225175093	4	71108										
ZNF642	0	genome.wustl.edu	37	chr1	40960790	40960790	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gagatgtgagacaagccatcTtgacccataagaagagagtc	11	8	1	5			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	40960790	40960790	T	A	SNP	ZNF642	ENST00000372705	human	ensembl	69_37n	1	known	missense	c.640	p.L214M	0.705	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF642	HGNC	ENSG00000187815	44	0	0	25	4	13.79	-	-	-	A	40960790	T	A	40960790	3	1	865	1	0	0	0	0	1	0	0	0	18154	1606	56	5	658	5	ZNF642	1	40960790	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	16885262	40960790	208289831	5	71109										
C1orf173	0	genome.wustl.edu	37	chr1	75037611	75037611	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	agcacgacatccactcctccTtgcccttcagctctcccctc	4	21	2	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	75037611	75037611	T	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.3783	p.Q1261H	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	51	0	0	83	12	12.63	-	-	-	A	75037611	T	A	75037611	3	1	865	1	0	0	0	0	1	0	0	0	2033	1606	56	5	813	5	C1orf173	1	75037611	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	34076821	75037611	174213010	6	71110										
GBP4	0	genome.wustl.edu	37	chr1	89660995	89660995	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cttaccttttctacatcgccCaggccctcggtgtccagaag	8	15	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	89660995	89660995	C	G	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	silent	c.348	p.L116	0.993	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	50	0	0	51	11	17.74	-	-	-	G	89660995	C	G	89660995	2	3	865	1	0	0	0	0	0	0	0	1	6326	581	21	4		4	GBP4	1	89660995	Silent	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	14623384	89660995	159589626	7	71111										
HRNR	0	genome.wustl.edu	37	chr1	152186041	152186042	+	Frame_Shift_Ins	INS	-	-	GG													0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	caaagacagaagagtgacccINSaagcgagactcatatgggcc							TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	152186041	152186042	-	GG	INS	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_ins	c.8064_8063	p.L2688fs	0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0	4	2	33.33	-	-	-	GG	152186042	-	GG	152186041	7	5	865	1	0	1	1	0	0	0	0	0	7410	593	21	0	492	0	HRNR	1	152186041	Frame_Shift_Ins	INS	-	TCGA-E9-A22E-01A-11D-A159-09	62525046	152186041	97064580	8	71112										
FCRL3	0	genome.wustl.edu	37	chr1	157648560	157648560	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tagttttcttcatcatcttcTtcatgggccctgcctctgct	6	13	7	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	157648560	157648560	T	A	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	missense	c.2145	p.E715D	0.002	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	70	0	0	133	20	13.07	-	-	-	A	157648560	T	A	157648560	3	1	865	1	0	0	0	0	1	0	0	0	5842	1606	56	5	63	5	FCRL3	1	157648560	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	5462519	157648560	91602061	9	71113										
ADCY10	0	genome.wustl.edu	37	chr1	167787330	167787330	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cttgagtagctcctccccacTggcttgggcattctctgact	9	14	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	1	167787330	167787330	T	A	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.4462	p.S1488C	0.098	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	65	0	0	117	23	16.43	-	-	-	A	167787330	T	A	167787330	3	1	865	1	0	0	0	0	1	0	0	0	293	1580	55	5	382	5	ADCY10	1	167787330	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	10138770	167787330	81463291	10	71114										
TMEM18	0	genome.wustl.edu	37	chr2	669836	669836	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ccctggagtcgaaatactggTatttcgaaaataatctgttt	8	7	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	2	669836	669836	T	C	SNP	TMEM18	ENST00000281017	human	ensembl	69_37n	-1	known	missense	c.248	p.Y83C	1.000	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	36	0	0	15	12	44.44	-	-	-	C	669836	T	C	669836	3	2	865	1	0	0	0	0	1	0	0	0	16193	1638	57	5	182	5	TMEM18	2	669836	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09		669836	242529537	11	71115										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48873664	48873664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	agcaggtattcttcagcatcCaattcagcaagtatttcaac	6	10	4	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	2	48873664	48873664	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	missense	c.2573	p.P858L	0.962	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	42	0	0	39	20	33.9	-	-	-	T	48873664	C	T	48873664	3	4	865	1	0	0	0	0	1	0	0	0	15408	594	21	4	2599	4	STON1-GTF2A1L	2	48873664	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	48203828	48873664	194325709	12	71116										
CCDC142	0	genome.wustl.edu	37	chr2	74708475	74708475	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggctgctctgacccccaagaGctgatcccaaggcctggcag	12	15	1	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	2	74708475	74708475	G	C	SNP	CCDC142	ENST00000393965	human	ensembl	69_37n	-1	known	missense	c.1133	p.A378G	0.603	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637	63	0	0	113	22	16.3	-	-	-	C	74708475	G	C	74708475	3	2	865	1	0	0	0	0	1	0	0	0	2801	971	34	4	1126	4	CCDC142	2	74708475	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	25834811	74708475	168490898	13	71117										
TTN	0	genome.wustl.edu	37	chr2	179471857	179471857	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgtccctcaagcagacctgtGatgtcacatttagatctctc	7	12	3	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	2	179471857	179471857	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.45768	p.I15256	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	77	0	0	52	25	32.47	-	-	-	A	179471857	G	A	179471857	2	1	865	1	0	0	0	0	0	0	0	1	16832	1280	45	2		2	TTN	2	179471857	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	104763382	179471857	63727516	14	71118										
KIF1A	0	genome.wustl.edu	37	chr2	241700197	241700197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gtctttggcggcctctggggGcagcaggtcgggtggcagag	20	9	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	2	241700197	241700197	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.2329	p.P777S	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	21	0	0	19	11	36.67	-	-	-	A	241700197	G	A	241700197	3	1	865	1	0	0	0	0	1	0	0	0	8335	1203	42	4	2866	4	KIF1A	2	241700197	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	62228340	241700197	1499176	15	71119										
ZNF662	0	genome.wustl.edu	37	chr3	42955921	42955921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	aagtggaccccagtggtgtgGatcccaggaattatggtttg	14	7	0	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	3	42955921	42955921	G	A	SNP	ZNF662	ENST00000328199	human	ensembl	69_37n	1	known	missense	c.434	p.G145E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983	45	0	0	33	11	25	-	-	-	A	42955921	G	A	42955921	3	1	865	1	0	0	0	0	1	0	0	0	18167	1174	41	2	557	2	ZNF662	3	42955921	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		42955921	155066509	16	71120										
PTPRG	0	genome.wustl.edu	37	chr3	62204610	62204610	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctgattgtggtatcagccttGaccttcgtgtgcctcatcct	9	12	2	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	3	62204610	62204610	G	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.2241	p.L747F	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	63	0	0	98	15	13.27	-	-	-	C	62204610	G	C	62204610	3	2	865	1	0	0	0	0	1	0	0	0	12885	1281	45	2	2291	2	PTPRG	3	62204610	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	19248689	62204610	135817820	17	71121										
GPR149	0	genome.wustl.edu	37	chr3	154147332	154147332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggttcctggcggatttaaaaGgtccgtagaattatgattct	11	6	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	3	154147332	154147332	G	T	SNP	GPR149	ENST00000389740	human	ensembl	69_37n	-1	known	missense	c.73	p.L25I	0.019	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR149	HGNC	ENSG00000174948	35	0	0	26	13	33.33	-	-	-	T	154147332	G	T	154147332	3	4	865	1	0	0	0	0	1	0	0	0	6704	1000	35	4	2138	4	GPR149	3	154147332	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	91942722	154147332	43875098	18	71122										
MUC4	0	genome.wustl.edu	37	chr3	195505807	195505807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cgtgacctgtggatgctgagGaagtgtcggtgacaggaaga	17	6	0	4			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	3	195505807	195505807	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12644	p.S4215Y	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	109	0	0	216	25	10.37	-	-	-	T	195505807	G	T	195505807	3	4	865	1	0	0	0	0	1	0	0	0	10050	1174	41	2		2	MUC4	3	195505807	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	41358475	195505807	2516623	19	71123										
NUDT9	0	genome.wustl.edu	37	chr4	88363019	88363019	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tggactggtgggccgggggcTtttggggcgatggggcccaa	21	8	0	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	4	88363019	88363019	T	G	SNP	NUDT9	ENST00000302174	human	ensembl	69_37n	1	known	missense	c.482	p.L161R	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT9	HGNC	ENSG00000170502	33	0	0	34	5	12.82	-	-	-	G	88363019	T	G	88363019	3	3	865	1	0	0	0	0	1	0	0	0	10819	1609	56	5	496	5	NUDT9	4	88363019	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09		88363019	102791257	20	71124										
DSPP	0	genome.wustl.edu	37	chr4	88537096	88537096	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	agtgacagcagcaatagcagTgacagcagcgatagcagcga	13	9	0	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	4	88537096	88537096	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	1	known	silent	c.3282	p.S1094	0.001	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	12	0	0	19	8	29.63	-	-	-	C	88537096	T	C	88537096	2	2	865	1	0	0	0	0	0	0	0	1	4817	1693	59	5		5	DSPP	4	88537096	Silent	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	174077	88537096	102617180	21	71125										
INTS12	0	genome.wustl.edu	37	chr4	106614625	106614625	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctttggaatatcaactccttCagtgatgtctgatttcatct	6	9	5	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	4	106614625	106614625	C	T	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	missense	c.328	p.E110K	0.998	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	72	0	0	62	7	10.14	-	-	-	T	106614625	C	T	106614625	3	4	865	1	0	0	0	0	1	0	0	0	7831	835	29	2	1076	2	INTS12	4	106614625	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	18077529	106614625	84539651	22	71126										
DCLK2	0	genome.wustl.edu	37	chr4	151153843	151153843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gtatcgtttagggtggagatCtctttgatgcaattacttcg	11	6	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	4	151153843	151153843	C	G	SNP	DCLK2	ENST00000302176	human	ensembl	69_37n	1	known	missense	c.1480	p.L494V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390	51	0	0	51	8	13.56	-	-	-	G	151153843	C	G	151153843	3	3	865	1	0	0	0	0	1	0	0	0	4323	913	32	2	1467	2	DCLK2	4	151153843	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	44539218	151153843	40000433	23	71127										
FBXW7	0	genome.wustl.edu	37	chr4	153250888	153250888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	aaccactaactattcggttaCcacaaaactgtaagcatgtg	6	10	0	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	4	153250888	153250888	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1172	p.G391D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	42	0	0	19	23	54.76	-	-	-	T	153250888	C	T	153250888	3	4	865	1	0	0	0	0	1	0	0	0	5815	507	18	4	971	4	FBXW7	4	153250888	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	2097045	153250888	37903388	24	71128										
FAM105A	0	genome.wustl.edu	37	chr5	14609028	14609028	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctaaaaaggtcattcccagtCtttttagactcctgttttcc	5	11	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	5	14609028	14609028	C	G	SNP	FAM105A	ENST00000274217	human	ensembl	69_37n	1	known	missense	c.799	p.L267V	0.026	prints_FAM105	prints_FAM105,prints_FAM105A	-	no_errors	FAM105A	HGNC	ENSG00000145569	54	0	0	53	6	10.17	-	-	-	G	14609028	C	G	14609028	3	3	865	1	0	0	0	0	1	0	0	0	5427	913	32	2	825	2	FAM105A	5	14609028	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		14609028	166306232	25	71129										
MEF2C	0	genome.wustl.edu	37	chr5	88100452	88100452	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ttgtccggctctcatgcggcTcgttgtactccgtgtacttg	11	12	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	5	88100452	88100452	T	A	SNP	MEF2C	ENST00000437473	human	ensembl	69_37n	-1	known	missense	c.221	p.E74V	1.000	superfamily_TF_MADSbox	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	59	0	0	85	17	16.67	-	-	-	A	88100452	T	A	88100452	3	1	865	1	0	0	0	0	1	0	0	0	9528	1551	54	5	1378	5	MEF2C	5	88100452	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	73491424	88100452	92814808	26	71130										
GPR98	0	genome.wustl.edu	37	chr5	90049486	90049486	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gaggttgtgattgtaaccctCacccgtatcaccacagaagg	10	11	2	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	5	90049486	90049486	C	A	SNP	GPR98	ENST00000509621	human	ensembl	69_37n	1	putative	nonsense	c.3914	p.S1305*	0.121	NULL	pfam_Calx_beta,pfam_EPTP,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR98	HGNC	ENSG00000164199	66	0	0	19	17	47.22	-	-	-	A	90049486	C	A	90049486	4	1	865	1	0	0	0	0	0	1	0	0	6772	813	29	2	11431	2	GPR98	5	90049486	Nonsense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	1949034	90049486	90865774	27	71131										
FAM13B	0	genome.wustl.edu	37	chr5	137292177	137292177	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	catacttaccctccccatctCtctgcagatgcattgttttg	5	14	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	5	137292177	137292177	C	G	SNP	FAM13B	ENST00000425075	human	ensembl	69_37n	-1	known	missense	c.1142	p.R381T	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	68	0	0	49	7	12.5	-	-	-	G	137292177	C	G	137292177	3	3	865	1	0	0	0	0	1	0	0	0	5493	913	32	2	1361	2	FAM13B	5	137292177	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	47242691	137292177	43623083	28	71132										
LRRC16A	0	genome.wustl.edu	37	chr6	25600824	25600824	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	acacctgactcctttgaagaGagtcaaggggaagaaatagg	12	7	1	4			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	6	25600824	25600824	G	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.3402	p.E1134D	0.075	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	30	0	0	19	4	17.39	-	-	-	T	25600824	G	T	25600824	3	4	865	1	0	0	0	0	1	0	0	0	9037	933	33	2	3532	2	LRRC16A	6	25600824	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		25600824	145514243	29	71133										
ZBTB12	0	genome.wustl.edu	37	chr6	31868782	31868782	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggcggctgtaaggtagttgaCgatgtccctaacagcgaatt	13	8	0	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	6	31868782	31868782	C	A	SNP	ZBTB12	ENST00000375527	human	ensembl	69_37n	-1	known	missense	c.301	p.V101F	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB12	HGNC	ENSG00000204366	21	0	0	28	9	24.32	-	-	-	A	31868782	C	A	31868782	3	1	865	1	0	0	0	0	1	0	0	0	17621	536	19	3	1082	3	ZBTB12	6	31868782	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	6267958	31868782	139246285	30	71134										
FAM184A	0	genome.wustl.edu	37	chr6	119337997	119337997	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tccaagctaattcttccaaaGtcttagaatgggcctcgttt	7	10	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	6	119337997	119337997	G	C	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	missense	c.1445	p.T482S	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	87	0	0	90	23	20.35	-	-	-	C	119337997	G	C	119337997	3	2	865	1	0	0	0	0	1	0	0	0	5552	1029	36	4	2033	4	FAM184A	6	119337997	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	87469215	119337997	51777070	31	71135										
SOD2	0	genome.wustl.edu	37	chr6	160109177	160109177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cctttgggttctccaccaccGttagggctgaggtttgtcca	11	12	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	6	160109177	160109177	G	A	SNP	SOD2	ENST00000367055	human	ensembl	69_37n	-1	known	silent	c.324	p.N108	0.986	superfamily_Mn/Fe_SOD_C,pirsf_Mn/Fe_SOD	pfam_Mn/Fe_SOD_C,pfam_Mn/Fe_SOD_N,superfamily_Mn/Fe_SOD_C,superfamily_Mn/Fe_SOD_N,pirsf_Mn/Fe_SOD,prints_Mn/Fe_SOD	-	no_errors	SOD2	HGNC	ENSG00000112096	57	0	0	54	6	10	-	-	-	A	160109177	G	A	160109177	2	1	865	1	0	0	0	0	0	0	0	1	15010	1136	40	1		1	SOD2	6	160109177	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	40771180	160109177	11005890	32	71136										
SEMA3A	0	genome.wustl.edu	37	chr7	83689801	83689801	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctattaaaagggatgctgtcAgcagcttagggtcatatgga	12	6	2	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	7	83689801	83689801	A	T	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.527	p.L176Q	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	63	0	0	28	7	20	-	-	-	T	83689801	A	T	83689801	3	4	865	1	0	0	0	0	1	0	0	0	14112	188	7	5	1840	5	SEMA3A	7	83689801	Missense_Mutation	SNP	A	TCGA-E9-A22E-01A-11D-A159-09		83689801	75448862	33	71137										
KRIT1	0	genome.wustl.edu	37	chr7	91864817	91864817	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tctttatttctagtgcactaTagcccatatgtagtgagttt	7	7	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	7	91864817	91864817	T	C	SNP	KRIT1	ENST00000340022	human	ensembl	69_37n	-1	known	missense	c.629	p.Y210C	1.000	NULL	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631	80	0	0	118	17	12.59	-	-	-	C	91864817	T	C	91864817	3	2	865	1	0	0	0	0	1	0	0	0	8498	1406	49	5	1629	5	KRIT1	7	91864817	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	8175016	91864817	67273846	34	71138										
VIPR2	0	genome.wustl.edu	37	chr7	158829459	158829459	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ttaccccatccgatcaggagGtaggccaggaagcaccttct	10	13	2	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	7	158829459	158829459	G	T	SNP	VIPR2	ENST00000262178	human	ensembl	69_37n	-1	known	nonsense	c.732	p.Y244*	0.965	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR2	HGNC	ENSG00000106018	19	0	0	16	9	36	-	-	-	T	158829459	G	T	158829459	4	4	865	1	0	0	0	0	0	1	0	0	17267	1256	44	4	612	4	VIPR2	7	158829459	Nonsense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	66964642	158829459	309204	35	71139										
COL14A1	0	genome.wustl.edu	37	chr8	121239591	121239591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgactgctgtcgggaccacaCgtaagtcttggtctggccac	12	12	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	8	121239591	121239591	C	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.2137	p.L713I	1.000	superfamily_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	40	0	0	81	12	12.9	-	-	-	A	121239591	C	A	121239591	3	1	865	1	0	0	0	0	1	0	0	0	3701	550	19	3	2199	3	COL14A1	8	121239591	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		121239591	25124431	36	71140										
ERMP1	0	genome.wustl.edu	37	chr9	5805055	5805055	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	acgagagaatcattgtacagCcagccaaaatggatgccagc	10	10	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	9	5805055	5805055	C	A	SNP	ERMP1	ENST00000339450	human	ensembl	69_37n	-1	known	missense	c.1886	p.G629V	0.001	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219	52	0	0	27	11	28.95	-	-	-	A	5805055	C	A	5805055	3	1	865	1	0	0	0	0	1	0	0	0	5273	739	26	4	852	4	ERMP1	9	5805055	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		5805055	135408376	37	71141										
DNAI1	0	genome.wustl.edu	37	chr9	34514510	34514510	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	catgtcctgcagctccgactGgacagtgaagatctgggacc	12	12	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	9	34514510	34514510	G	A	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	nonsense	c.1688	p.W563*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	27	0	0	27	20	42.55	-	-	-	A	34514510	G	A	34514510	4	1	865	1	0	0	0	0	0	1	0	0	4644	1357	47	4	1754	4	DNAI1	9	34514510	Nonsense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	28709455	34514510	106698921	38	71142										
APBA1	0	genome.wustl.edu	37	chr9	72130950	72130950	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tccgtccatcggcctctggtCgtcacagtccctggtggggc	13	15	2	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	9	72130950	72130950	C	A	SNP	APBA1	ENST00000265381	human	ensembl	69_37n	-1	known	missense	c.1177	p.D393Y	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	19	0	0	21	9	30	-	-	-	A	72130950	C	A	72130950	3	1	865	1	0	0	0	0	1	0	0	0	757	884	31	3	1384	3	APBA1	9	72130950	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	37616440	72130950	69082481	39	71143										
PALM2-AKAP2	0	genome.wustl.edu	37	chr9	112898669	112898669	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cctggataatgatgttgccaGagagatccgctatctagatg	11	8	1	4			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	9	112898669	112898669	G	C	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	1	known	missense	c.845	p.R282T	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	46	0	0	46	16	25.81	-	-	-	C	112898669	G	C	112898669	3	2	865	1	0	0	0	0	1	0	0	0	11483	942	33	2	875	2	PALM2-AKAP2	9	112898669	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	40767719	112898669	28314762	40	71144										
CARD9	0	genome.wustl.edu	37	chr9	139261697	139261697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cctcctgggtgagccatcttCcaggtcggagctctgtggtc	13	13	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	9	139261697	139261697	C	T	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	missense	c.1282	p.E428K	1.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	30	0	0	65	16	19.75	-	-	-	T	139261697	C	T	139261697	3	4	865	1	0	0	0	0	1	0	0	0	2677	864	30	2	401	2	CARD9	9	139261697	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	26363028	139261697	1951734	41	71145										
RET	0	genome.wustl.edu	37	chr10	43607665	43607665	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgtgagtggaggcaaggagaTggcaaaggtaagccctggaa	17	5	0	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	10	43607665	43607665	T	C	SNP	RET	ENST00000355710	human	ensembl	69_37n	1	known	silent	c.1641	p.D547	0.582	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	29	0	0	29	24	45.28	-	-	-	C	43607665	T	C	43607665	2	2	865	1	0	0	0	0	0	0	0	1	13318	1461	51	5		5	RET	10	43607665	Silent	SNP	T	TCGA-E9-A22E-01A-11D-A159-09		43607665	91927082	42	71146										
ANK3	0	genome.wustl.edu	37	chr10	61822913	61822913	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgttctcatctgcaaaacttCtggtgcctgaaatatttcca	6	10	3	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	10	61822913	61822913	C	A	SNP	ANK3	ENST00000514197	human	ensembl	69_37n	-1	novel	nonsense	c.232	p.E78*	1.000	superfamily_DEATH-like	pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_start_codon:pseudogene:no_stop_codon	ANK3	HGNC	ENSG00000151150	66	0	0	39	17	30.36	-	-	-	A	61822913	C	A	61822913	4	1	865	1	0	0	0	0	0	1	0	0	622	913	32	2	911	2	ANK3	10	61822913	Nonsense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	18215248	61822913	73711834	43	71147										
UBE2L6	0	genome.wustl.edu	37	chr11	57322087	57322087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gaaggctttcaggtggtaggGaggttggtcctgtgcagaga	18	5	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	11	57322087	57322087	G	C	SNP	UBE2L6	ENST00000287156	human	ensembl	69_37n	-1	known	missense	c.133	p.P45A	1.000	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L6	HGNC	ENSG00000156587	25	0	0	39	8	17.02	-	-	-	C	57322087	G	C	57322087	3	2	865	1	0	0	0	0	1	0	0	0	16961	1174	41	2	336	2	UBE2L6	11	57322087	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		57322087	77684429	44	71148										
RTN3	0	genome.wustl.edu	37	chr11	63523641	63523644	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	agaccaagtcaattgttgaaAagtaagtacatttagagacc							TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	11	63523641	63523644	AAGT	-	DEL	RTN3	ENST00000377819	human	ensembl	69_37n	1	known	frame_shift_del	c.3052_3053	p.K1018fs	1.000:1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	69	0	0	55	26	32.1	-	-	-	-	63523644	AAGT	-	63523641	7	5	865	1	0	1	0	1	0	0	0	0	13813	28	1	0	3082	0	RTN3	11	63523641	Frame_Shift_Del	DEL	AAGT	TCGA-E9-A22E-01A-11D-A159-09	6201554	63523641	71482875	45	71149										
AASDHPPT	0	genome.wustl.edu	37	chr11	105962133	105962133	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	atctatctccattaaacttgGatataggccaagtttataaa	5	7	2	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	11	105962133	105962133	G	C	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	1	known	missense	c.622	p.D208H	1.000	superfamily_4-PPantetheinyl_Trfase	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	79	0	0	52	10	16.13	-	-	-	C	105962133	G	C	105962133	3	2	865	1	0	0	0	0	1	0	0	0	23	1174	41	2	636	2	AASDHPPT	11	105962133	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	42438492	105962133	29044383	46	71150										
ANKK1	0	genome.wustl.edu	37	chr11	113264435	113264435	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tcctgcacagcattaagccgCctctgctccacctggacctc	7	18	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	11	113264435	113264435	C	G	SNP	ANKK1	ENST00000303941	human	ensembl	69_37n	1	known	missense	c.418	p.P140A	0.715	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ANKK1	HGNC	ENSG00000170209	29	0	0	37	6	13.95	-	-	-	G	113264435	C	G	113264435	3	3	865	1	0	0	0	0	1	0	0	0	631	739	26	4	424	4	ANKK1	11	113264435	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	7302302	113264435	21742081	47	71151										
BIN2	0	genome.wustl.edu	37	chr12	51693051	51693051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	atcttcaaacacagtctgggCtttgttgaactcttcctctg	7	11	5	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	12	51693051	51693051	C	A	SNP	BIN2	ENST00000267012	human	ensembl	69_37n	-1	known	missense	c.538	p.A180S	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934	55	0	0	82	11	11.7	-	-	-	A	51693051	C	A	51693051	3	1	865	1	0	0	0	0	1	0	0	0	1438	797	28	4	1187	4	BIN2	12	51693051	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		51693051	82158844	48	71152										
KLHL1	0	genome.wustl.edu	37	chr13	70535549	70535549	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cttgtaaacatggccgcaaaAtagtcggagactgaactcag	10	9	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	13	70535549	70535549	A	G	SNP	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	silent	c.708	p.Y236	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	57	0	0	48	8	14.29	-	-	-	G	70535549	A	G	70535549	2	3	865	1	0	0	0	0	0	0	0	1	8418	108	4	5		5	KLHL1	13	70535549	Silent	SNP	A	TCGA-E9-A22E-01A-11D-A159-09		70535549	44634329	49	71153										
PCK2	0	genome.wustl.edu	37	chr14	24572061	24572061	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggaggccccagagggtgtccCcattgacgccatcatctttg	12	13	2	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	14	24572061	24572061	C	A	SNP	PCK2	ENST00000216780	human	ensembl	69_37n	1	known	missense	c.1334	p.P445H	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	37	0	0	39	13	25	-	-	-	A	24572061	C	A	24572061	3	1	865	1	0	0	0	0	1	0	0	0	11655	623	22	4	1456	4	PCK2	14	24572061	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		24572061	82777479	50	71154										
PTGER2	0	genome.wustl.edu	37	chr14	52793971	52793971	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	atgaatgaaacctcttcccgAaaggaaaaatgggacctcca	8	10	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	14	52793971	52793971	A	C	SNP	PTGER2	ENST00000245457	human	ensembl	69_37n	1	known	silent	c.876	p.R292	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384	69	0	0	63	33	34.38	-	-	-	C	52793971	A	C	52793971	2	2	865	1	0	0	0	0	0	0	0	1	12824	233	9	5		5	PTGER2	14	52793971	Silent	SNP	A	TCGA-E9-A22E-01A-11D-A159-09	28221910	52793971	54555569	51	71155										
RYR3	0	genome.wustl.edu	37	chr15	33928672	33928672	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	aacctggatgatgcttcaatGatcttcacactgaatgggga	10	8	3	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	15	33928672	33928672	G	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.3477	p.M1159I	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	68	0	0	56	14	20	-	-	-	T	33928672	G	T	33928672	3	4	865	1	0	0	0	0	1	0	0	0	13856	1290	45	2	3583	2	RYR3	15	33928672	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		33928672	68602720	52	71156										
CKMT1B	0	genome.wustl.edu	37	chr15	43890514	43890514	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gagtgcacatcaaactgcccCtgctaagcaaagtaaaggag	10	10	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	15	43890514	43890514	C	G	SNP	CKMT1B	ENST00000300283	human	ensembl	69_37n	1	known	missense	c.1000	p.L334V	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1B	HGNC	ENSG00000237289	50	0	0	80	21	20.59	-	-	-	G	43890514	C	G	43890514	3	3	865	1	0	0	0	0	1	0	0	0	3480	680	24	4	1026	4	CKMT1B	15	43890514	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	9961842	43890514	58640878	53	71157										
IREB2	0	genome.wustl.edu	37	chr15	78790455	78790455	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ttatacaaacatggaggattAttaaactttgtggcacgaaa	8	5	0	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	15	78790455	78790455	A	C	SNP	IREB2	ENST00000258886	human	ensembl	69_37n	1	known	missense	c.2862	p.L954F	0.997	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381	78	0	0	39	8	17.02	-	-	-	C	78790455	A	C	78790455	3	2	865	1	0	0	0	0	1	0	0	0	7880	446	16	5	2948	5	IREB2	15	78790455	Missense_Mutation	SNP	A	TCGA-E9-A22E-01A-11D-A159-09	34899941	78790455	23740937	54	71158										
CRYM	0	genome.wustl.edu	37	chr16	21288827	21288827	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gggacgaccgaggtgatgccGcggtcctcgtagaaggtgac	17	10	0	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	16	21288827	21288827	G	A	SNP	CRYM	ENST00000219599	human	ensembl	69_37n	-1	known	silent	c.249	p.R83	0.968	pfam_ODC_Mu_crystall	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	CRYM	HGNC	ENSG00000103316	19	0	0	14	13	48.15	-	-	-	A	21288827	G	A	21288827	2	1	865	1	0	0	0	0	0	0	0	1	3951	1074	38	1		1	CRYM	16	21288827	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		21288827	69065926	55	71159										
HYDIN	0	genome.wustl.edu	37	chr16	71101180	71101180	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gactcaggagaagagcaagcTggggagcaataccttgctgt	14	8	1	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	16	71101180	71101180	T	C	SNP	HYDIN	ENST00000288168	human	ensembl	69_37n	-1	known	silent	c.2139	p.P713	0.016	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	13	0	0	18	8	30.77	-	-	-	C	71101180	T	C	71101180	2	2	865	1	0	0	0	0	0	0	0	1	7521	1595	55	5		5	HYDIN	16	71101180	Silent	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	49812353	71101180	19253573	56	71160										
DNAH9	0	genome.wustl.edu	37	chr17	11597316	11597316	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctggaggatattcagggcagGtgagggtccgcccattaccc	14	11	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	11597316	11597316	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	splice_site	c.4745+1	e21+1	1.000	-	-	-	no_errors	DNAH9	HGNC	ENSG00000007174	43	0	0	20	20	50	-	-	-	T	11597316	G	T	11597316	5	4	865	1	0	0	0	0	0	0	1	0	4643	1275	44	4	4828	4	DNAH9	17	11597316	Splice_Site	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		11597316	69597894	57	71161										
IFT20	0	genome.wustl.edu	37	chr17	26658938	26658938	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ctatggtctgctgggtaaccTctgggtccaacaccctcagc	10	14	3	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	26658938	26658938	T	A	SNP	IFT20	ENST00000585089	human	ensembl	69_37n	-1	known	missense	c.152	p.E51V	1.000	NULL	NULL	-	no_errors	IFT20	HGNC	ENSG00000109083	85	0	0	70	53	42.74	-	-	-	A	26658938	T	A	26658938	3	1	865	1	0	0	0	0	1	0	0	0	7612	1551	54	5	392	5	IFT20	17	26658938	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	15061622	26658938	54536272	58	71162										
RAB11FIP4	0	genome.wustl.edu	37	chr17	29758839	29758839	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tcattcccacaggtggaaaaActtgtgaaatatttggatcc	8	8	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	29758839	29758839	A	G	SNP	RAB11FIP4	ENST00000325874	human	ensembl	69_37n	1	known	silent	c.168	p.K56	1.000	pfscan_EF_HAND_2	pfam_Rab-bd_FIP-RBD,pfscan_EF_HAND_2	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242	18	0	0	23	6	20.69	-	-	-	G	29758839	A	G	29758839	2	3	865	1	0	0	0	0	0	0	0	1	12979	40	2	5		5	RAB11FIP4	17	29758839	Silent	SNP	A	TCGA-E9-A22E-01A-11D-A159-09	3099901	29758839	51436371	59	71163										
ARL17B	0	genome.wustl.edu	37	chr17	44430254	44430254	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggctgccaacatcccagacaGcgaaggtgttatttttatat	9	9	0	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	44430254	44430254	G	C	SNP	ARL17B	ENST00000450673	human	ensembl	69_37n	-1	known	missense	c.191	p.A64G	1.000	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL17B	HGNC	ENSG00000228696	9	0	0	2	4	66.67	-	-	-	C	44430254	G	C	44430254	3	2	865	1	0	0	0	0	1	0	0	0	936	971	34	4	472	4	ARL17B	17	44430254	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	14671415	44430254	36764956	60	71164										
HOXB3	0	genome.wustl.edu	37	chr17	46629656	46629656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cttgctcttggcatgtggggCagcgttgcccagggactgca	15	11	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	46629656	46629656	C	T	SNP	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	missense	c.181	p.A61T	0.974	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	13	0	0	9	16	64	-	-	-	T	46629656	C	T	46629656	3	4	865	1	0	0	0	0	1	0	0	0	7353	710	25	4	1122	4	HOXB3	17	46629656	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	2199402	46629656	34565554	61	71165										
MBTD1	0	genome.wustl.edu	37	chr17	49270117	49270117	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	attgctgatttttacaaaagGacaccttttctgtataccaa	5	8	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	17	49270117	49270117	G	C	SNP	MBTD1	ENST00000586898	human	ensembl	69_37n	-1	known	silent	c.261	p.V87	0.998	NULL	pfam_Mbt,smart_Mbt,pfscan_Mbt	-	no_start_codon	MBTD1	HGNC	ENSG00000011258	49	0	0	65	16	19.75	-	-	-	C	49270117	G	C	49270117	2	2	865	1	0	0	0	0	0	0	0	1	9431	1189	41	2		2	MBTD1	17	49270117	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	2640461	49270117	31925093	62	71166										
ZNF99	0	genome.wustl.edu	37	chr19	22939510	22939510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ccacattcttcacatttgtaCggtttctccccagtatgaat	5	12	3	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	19	22939510	22939510	C	T	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	silent	c.2661	p.P887	0.077	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	50	0	0	49	9	15.52	-	-	-	T	22939510	C	T	22939510	2	4	865	1	0	0	0	0	0	0	0	1	18297	523	19	1		1	ZNF99	19	22939510	Silent	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		22939510	36189473	63	71167										
AXL	0	genome.wustl.edu	37	chr19	41736883	41736883	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	actccctagggctgaacaagAcatcctctttctcctgcgaa	7	14	2	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	19	41736883	41736883	A	G	SNP	AXL	ENST00000301178	human	ensembl	69_37n	1	known	missense	c.598	p.T200A	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	11	0	0	28	9	24.32	-	-	-	G	41736883	A	G	41736883	3	3	865	1	0	0	0	0	1	0	0	0	1242	275	10	5	616	5	AXL	19	41736883	Missense_Mutation	SNP	A	TCGA-E9-A22E-01A-11D-A159-09	18797373	41736883	17392100	64	71168										
NLRP9	0	genome.wustl.edu	37	chr19	56244393	56244393	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	aatgcaataaggagagaggaTtctggaagcatctttttttg	11	4	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	19	56244393	56244393	T	A	SNP	NLRP9	ENST00000332836	human	ensembl	69_37n	-1	known	missense	c.804	p.E268D	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	54	0	0	34	13	27.66	-	-	-	A	56244393	T	A	56244393	3	1	865	1	0	0	0	0	1	0	0	0	10556	1490	52	5	2203	5	NLRP9	19	56244393	Missense_Mutation	SNP	T	TCGA-E9-A22E-01A-11D-A159-09	14507510	56244393	2884590	65	71169										
ESF1	0	genome.wustl.edu	37	chr20	13699616	13699616	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	catcttttgcagattttaccGattttttatttatacctggc	5	8	1	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	20	13699616	13699616	G	C	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	missense	c.2054	p.S685W	0.997	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	77	0	0	108	41	27.52	-	-	-	C	13699616	G	C	13699616	3	2	865	1	0	0	0	0	1	0	0	0	5288	1059	37	3	513	3	ESF1	20	13699616	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09		13699616	49325904	66	71170										
BPI	0	genome.wustl.edu	37	chr20	36935973	36935973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgccttctcccttcagccagCcagcaggggacggccgctct	11	17	3	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	20	36935973	36935973	C	A	SNP	BPI	ENST00000262865	human	ensembl	69_37n	1	known	missense	c.147	p.S49R	0.983	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPI	HGNC	ENSG00000101425	17	0	0	22	11	33.33	-	-	-	A	36935973	C	A	36935973	3	1	865	1	0	0	0	0	1	0	0	0	1498	738	26	4	153	4	BPI	20	36935973	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	23236357	36935973	26089547	67	71171										
SLC12A5	0	genome.wustl.edu	37	chr20	44685909	44685909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ttgttttgctcaacatgcctGggcctccccgcaaccgcaat	8	15	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	20	44685909	44685909	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.3295	p.G1099R	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	39	0	0	26	6	18.75	-	-	-	A	44685909	G	A	44685909	3	1	865	1	0	0	0	0	1	0	0	0	14475	1348	47	4	3449	4	SLC12A5	20	44685909	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	7749936	44685909	18339611	68	71172										
FAM65C	0	genome.wustl.edu	37	chr20	49232576	49232576	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tggtgtctttgtggcgtccaGacaggtggtccagctcagcc	14	11	2	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	20	49232576	49232576	G	A	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.311	p.S104F	0.119	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	55	0	0	97	13	11.82	-	-	-	A	49232576	G	A	49232576	3	1	865	1	0	0	0	0	1	0	0	0	5646	942	33	2	2617	2	FAM65C	20	49232576	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	4546667	49232576	13792944	69	71173										
PPDPF	0	genome.wustl.edu	37	chr20	62152940	62152940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ggaagccattccccacccccCaggtgagtgcaggatcgccc	11	17	0	1			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	20	62152940	62152940	C	T	SNP	PPDPF	ENST00000370177	human	ensembl	69_37n	1	known	missense	c.131	p.P44L	1.000	NULL	NULL	-	no_errors	PPDPF	HGNC	ENSG00000125534	19	0	0	37	18	32.73	-	-	-	T	62152940	C	T	62152940	3	4	865	1	0	0	0	0	1	0	0	0	12379	594	21	4	137	4	PPDPF	20	62152940	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	12920364	62152940	872580	70	71174										
GCFC1	0	genome.wustl.edu	37	chr21	34117167	34117167	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tgattaattttagtgtaattCccaccattcttgaagtctgt	6	7	2	2			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	21	34117167	34117167	C	G	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	missense	c.2126	p.G709A	0.998	pfam_GCFC_dom	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	74	0	0	60	8	11.76	-	-	-	G	34117167	C	G	34117167	3	3	865	1	0	0	0	0	1	0	0	0	6339	855	30	2	769	2	GCFC1	21	34117167	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09		34117167	14012728	71	71175										
POFUT2	0	genome.wustl.edu	37	chr21	46703436	46703436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	cctggtcaataaagggcccaCcagattctgaaagacaccaa	8	12	2	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	21	46703436	46703436	C	G	SNP	POFUT2	ENST00000349485	human	ensembl	69_37n	-1	known	missense	c.389	p.G130A	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	61	0	0	73	21	22.34	-	-	-	G	46703436	C	G	46703436	3	3	865	1	0	0	0	0	1	0	0	0	12258	507	18	4	1067	4	POFUT2	21	46703436	Missense_Mutation	SNP	C	TCGA-E9-A22E-01A-11D-A159-09	12586269	46703436	1426459	72	71176										
ASB9	0	genome.wustl.edu	37	chrX	15262744	15262744	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gcggcataactgcatcaaagAagggggccctggagaaagat	14	8	1	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	X	15262744	15262744	A	G	SNP	ASB9	ENST00000380488	human	ensembl	69_37n	-1	known	missense	c.769	p.S257P	0.834	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB9	HGNC	ENSG00000102048	53	0	0	69	16	18.82	-	-	-	G	15262744	A	G	15262744	3	3	865	1	0	0	0	0	1	0	0	0	1034	246	9	5	119	5	ASB9	23	15262744	Missense_Mutation	SNP	A	TCGA-E9-A22E-01A-11D-A159-09		15262744	140007816	73	71177										
TSR2	0	genome.wustl.edu	37	chrX	54467208	54467208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	agtggaggattacttcatgcGcaatggtgagtgaatgtgag	15	4	1	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	X	54467208	54467208	G	A	SNP	TSR2	ENST00000375151	human	ensembl	69_37n	1	known	missense	c.167	p.R56H	0.917	pfam_Pre-rRNA_process_TSR2	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526	19	0	0	17	5	22.73	-	-	-	A	54467208	G	A	54467208	3	1	865	1	0	0	0	0	1	0	0	0	16761	1087	38	1	173	1	TSR2	23	54467208	Missense_Mutation	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	39204464	54467208	100803352	74	71178										
CT47B1	0	genome.wustl.edu	37	chrX	120009232	120009234	+	In_Frame_Del	DEL	TCC	TCC	-													0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	tggccgcctcgttcccctctTcctcctcctcctcttcctcc							TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	X	120009232	120009234	TCC	-	DEL	CT47B1	ENST00000371311	human	ensembl	69_37n	-1	known	in_frame_del	c.293_291	p.E99in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446	11	0	0	13	9	40.91	-	-	-	-	120009234	TCC	-	120009232	7	5	865	1	0	1	0	1	0	0	0	0	4021	1783	62	0	614	0	CT47B1	23	120009232	In_Frame_Del	DEL	TCC	TCGA-E9-A22E-01A-11D-A159-09	65542024	120009232	35261328	75	71179										
AIFM1	0	genome.wustl.edu	37	chrX	129263589	129263589	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	ttgagatcttcatgctgctcAccgtccttaatgatctgagg	9	10	4	3			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	X	129263589	129263589	A	T	SNP	AIFM1	ENST00000287295	human	ensembl	69_37n	-1	known	silent	c.1785	p.G595	0.994	superfamily_FAD/NAD-linked_Rdtase_dimer	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709	79	0	0	106	25	19.08	-	-	-	T	129263589	A	T	129263589	2	4	865	1	0	0	0	0	0	0	0	1	426	146	6	5		5	AIFM1	23	129263589	Silent	SNP	A	TCGA-E9-A22E-01A-11D-A159-09	9254357	129263589	26006971	76	71180										
GAB3	0	genome.wustl.edu	37	chrX	153908516	153908516	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12987012987013	10	0.119165842049891	1.90315315315315	2.16358463726885	1.6120826709062	0.694584286803966	1	0	gctcagggaactggctgttcGgtgctcctcctaggaaccaa	12	12	1	0			TCGA-E9-A22E-01A-11D-A159-09	TCGA-E9-A22E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a1d7dafc-a755-44a6-b45b-dc6aae309d3e	126314e2-cbf4-40e6-9277-05857e870852	X	153908516	153908516	G	T	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	silent	c.1540	p.R514	0.004	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	34	0	0	29	8	21.05	-	-	-	T	153908516	G	T	153908516	2	4	865	1	0	0	0	0	0	0	0	1	6199	1124	39	3		3	GAB3	23	153908516	Silent	SNP	G	TCGA-E9-A22E-01A-11D-A159-09	24644927	153908516	1362044	77	71181										
MYOM3	0	genome.wustl.edu	37	chr1	24400724	24400724	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgactgagtaggtgcccaaaTcctcgaggccgggttctttc	12	11	1	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	24400724	24400724	T	C	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	missense	c.2897	p.D966G	0.991	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	48	0	0	24	31	56.36	-	-	-	C	24400724	T	C	24400724	3	2	866	1	0	0	0	0	1	0	0	0	10165	1435	50	5	1479	5	MYOM3	1	24400724	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09		24400724	224849897	1	71182										
HDAC1	0	genome.wustl.edu	37	chr1	32797806	32797807	+	Frame_Shift_Del	DEL	AG	AG	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	aaagccaagagagtcaaaacAgaggatgaaaaagagaaaga							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	32797806	32797807	AG	-	DEL	HDAC1	ENST00000373548	human	ensembl	69_37n	1	known	frame_shift_del	c.1335_1336	p.E446fs	0.995:1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478	52	0	0	46	28	37.84	-	-	-	-	32797807	AG	-	32797806	7	5	866	1	0	1	0	1	0	0	0	0	7055	175	7	0	1381	0	HDAC1	1	32797806	Frame_Shift_Del	DEL	AG	TCGA-E9-A22G-01A-11D-A159-09	8397082	32797806	216452815	2	71183										
LEPRE1	0	genome.wustl.edu	37	chr1	43220572	43220572	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gtctgctcacatccagtgacTccttggtcttctcttccaca	6	15	4	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	43220572	43220572	T	C	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1313	p.E438G	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	72	0	0	68	21	23.6	-	-	-	C	43220572	T	C	43220572	3	2	866	1	0	0	0	0	1	0	0	0	8783	1551	54	5	948	5	LEPRE1	1	43220572	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	10422766	43220572	206030049	3	71184										
TCTEX1D1	0	genome.wustl.edu	37	chr1	67243066	67243066	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gggatcctaaaagtgataccTtttcatcttatgttttcaga	7	7	3	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	67243066	67243066	T	A	SNP	TCTEX1D1	ENST00000282670	human	ensembl	69_37n	1	known	missense	c.469	p.F157I	0.913	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D1	HGNC	ENSG00000152760	61	0	0	50	26	34.21	-	-	-	A	67243066	T	A	67243066	3	1	866	1	0	0	0	0	1	0	0	0	15814	1609	56	5	483	5	TCTEX1D1	1	67243066	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	24022494	67243066	182007555	4	71185										
SLC44A5	0	genome.wustl.edu	37	chr1	75684372	75684372	+	Frame_Shift_Del	DEL	A	A	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgatggtacaagctctttccAccatagaaagcaaagttaca							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	75684372	75684372	A	-	DEL	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	frame_shift_del	c.1332	p.G445fs	0.993	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	24	0	0	20	20	50	-	-	-	-	75684372	A	-	75684372	7	5	866	1	0	1	0	1	0	0	0	0	14728	146	6	0	970	0	SLC44A5	1	75684372	Frame_Shift_Del	DEL	A	TCGA-E9-A22G-01A-11D-A159-09	8441306	75684372	173566249	5	71186										
PDE4DIP	0	genome.wustl.edu	37	chr1	144931537	144931537	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gaatcgatagattcgatcaaGcatgaaagcacacttgctgc	9	9	1	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	144931537	144931537	G	C	SNP	PDE4DIP	ENST00000313431	human	ensembl	69_37n	-1	known	missense	c.172	p.L58V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	43	0	0	47	13	21.67	-	-	-	C	144931537	G	C	144931537	3	2	866	1	0	0	0	0	1	0	0	0	11716	971	34	4	7527	4	PDE4DIP	1	144931537	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	69247165	144931537	104319084	6	71187										
MRPL9	0	genome.wustl.edu	37	chr1	151734858	151734858	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tcctttgagctcaccaatttCtcctcttcaaacagcttctt	3	14	5	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	151734858	151734858	C	A	SNP	MRPL9	ENST00000368830	human	ensembl	69_37n	-1	known	missense	c.429	p.E143D	1.000	superfamily_Ribosomal_L9/RNase_H1_N	pfam_Ribosomal_L9_N,superfamily_Ribosomal_L9/RNase_H1_N	-	no_errors	MRPL9	HGNC	ENSG00000143436	68	0	0	97	38	28.15	-	-	-	A	151734858	C	A	151734858	3	1	866	1	0	0	0	0	1	0	0	0	9892	912	32	2	394	2	MRPL9	1	151734858	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	6803321	151734858	97515763	7	71188										
RPTN	0	genome.wustl.edu	37	chr1	152129003	152129003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ctgactgatcaaagctgaaaTccttgtcttgtctctcagac	7	11	4	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	152129003	152129003	T	C	SNP	RPTN	ENST00000316073	human	ensembl	69_37n	-1	known	missense	c.572	p.D191G	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	RPTN	HGNC	ENSG00000215853	121	0	0	147	61	29.33	-	-	-	C	152129003	T	C	152129003	3	2	866	1	0	0	0	0	1	0	0	0	13750	1435	50	5	1786	5	RPTN	1	152129003	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	394145	152129003	97121618	8	71189										
HRNR	0	genome.wustl.edu	37	chr1	152191305	152191305	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ctgccctgagctagacttgtGaccaaagccagaagactggc	11	12	0	5			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	152191305	152191305	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.2800	p.H934N	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	86	0	0	107	56	34.36	-	-	-	T	152191305	G	T	152191305	3	4	866	1	0	0	0	0	1	0	0	0	7410	1290	45	2	5756	2	HRNR	1	152191305	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	62302	152191305	97059316	9	71190										
FLG	0	genome.wustl.edu	37	chr1	152279627	152279627	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cccagaccacctctcagagtCttctgagtgtccctgactgt	8	15	3	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	152279627	152279627	C	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.7735	p.D2579H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	94	0	0	152	75	33.04	-	-	-	G	152279627	C	G	152279627	3	3	866	1	0	0	0	0	1	0	0	0	5968	913	32	2	4454	2	FLG	1	152279627	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	88322	152279627	96970994	10	71191										
PRCC	0	genome.wustl.edu	37	chr1	156737604	156737604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cagcagcgatgagagcgagcCggatgaggctgagcccgagc	17	11	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	156737604	156737604	C	T	SNP	PRCC	ENST00000271526	human	ensembl	69_37n	1	known	missense	c.41	p.P14L	1.000	NULL	pfam_PRCC_C	-	no_errors	PRCC	HGNC	ENSG00000143294	10	0	0	9	13	59.09	-	-	-	T	156737604	C	T	156737604	3	4	866	1	0	0	0	0	1	0	0	0	12528	652	23	1	43	1	PRCC	1	156737604	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	4457977	156737604	92513017	11	71192										
SLAMF7	0	genome.wustl.edu	37	chr1	160718170	160718171	+	In_Frame_Ins	INS	-	-	TCC													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	aatcgtaatagggagagagtINSagacttcccagatggaggct							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	160718170	160718171	-	TCC	INS	SLAMF7	ENST00000368043	human	ensembl	69_37n	1	known	in_frame_ins	c.242_243	p.82in_frame_insP	0.038:0.006	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	SLAMF7	HGNC	ENSG00000026751	30	0	0	19	25	56.82	-	-	-	TCC	160718171	-	TCC	160718170	7	5	866	1	0	1	1	0	0	0	0	0	14458	1638	57	0	248	0	SLAMF7	1	160718170	In_Frame_Ins	INS	-	TCGA-E9-A22G-01A-11D-A159-09	3980566	160718170	88532451	12	71193										
C1orf129	0	genome.wustl.edu	37	chr1	170959084	170959084	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gcaggttatcactttgttgaCatgcacttcacccaagaagg	9	10	2	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	170959084	170959084	C	A	SNP	C1orf129	ENST00000367759	human	ensembl	69_37n	1	known	missense	c.968	p.T323K	0.002	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C1orf129	HGNC	ENSG00000117501	58	0	0	70	26	26.8	-	-	-	A	170959084	C	A	170959084	3	1	866	1	0	0	0	0	1	0	0	0	2015	478	17	4	1006	4	C1orf129	1	170959084	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	10240914	170959084	78291537	13	71194										
SLC30A1	0	genome.wustl.edu	37	chr1	211749099	211749099	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tcttcacattttatgtgagcAgtggcaatgattctgcttcc	8	9	3	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	1	211749099	211749099	A	G	SNP	SLC30A1	ENST00000367001	human	ensembl	69_37n	-1	known	silent	c.1155	p.T385	0.969	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385	25	0	0	42	23	35.38	-	-	-	G	211749099	A	G	211749099	2	3	866	1	0	0	0	0	0	0	0	1	14642	175	7	5		5	SLC30A1	1	211749099	Silent	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	40790015	211749099	37501522	14	71195										
HADHB	0	genome.wustl.edu	37	chr2	26492837	26492837	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccagatataaagacctgatgCcacatgatttggctagagca	9	9	0	5			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	2	26492837	26492837	C	A	SNP	HADHB	ENST00000317799	human	ensembl	69_37n	1	known	missense	c.226	p.P76T	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,tigrfam_Thiolase	-	no_errors	HADHB	HGNC	ENSG00000138029	95	0	0	101	47	31.76	-	-	-	A	26492837	C	A	26492837	3	1	866	1	0	0	0	0	1	0	0	0	6995	739	26	4	240	4	HADHB	2	26492837	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		26492837	216706536	15	71196										
APLF	0	genome.wustl.edu	37	chr2	68717336	68717336	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gtatagataacagacaagagAgtatccagaagacatgccat	9	7	0	5			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	2	68717336	68717336	A	C	SNP	APLF	ENST00000303795	human	ensembl	69_37n	1	known	missense	c.111	p.R37S	1.000	superfamily_SMAD_FHA_domain	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	65	0	0	74	41	35.65	-	-	-	C	68717336	A	C	68717336	3	2	866	1	0	0	0	0	1	0	0	0	777	301	11	5	117	5	APLF	2	68717336	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	42224499	68717336	174482037	16	71197										
ECEL1	0	genome.wustl.edu	37	chr2	233345461	233345461	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	atgaagaagagctggtcatgTgtgtacttgagccggggaag	16	5	1	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	2	233345461	233345461	T	A	SNP	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	silent	c.2118	p.T706	0.015	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	27	0	0	2	20	90.91	-	-	-	A	233345461	T	A	233345461	2	1	866	1	0	0	0	0	0	0	0	1	4926	1683	59	5		5	ECEL1	2	233345461	Silent	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	164628125	233345461	9853912	17	71198										
HJURP	0	genome.wustl.edu	37	chr2	234750032	234750032	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	caggaccccctctgtacatgTtcatggcccaggagtccggg	12	14	2	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	2	234750032	234750032	T	C	SNP	HJURP	ENST00000411486	human	ensembl	69_37n	-1	known	missense	c.1394	p.N465S	0.000	pfam_HJURP_C	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485	45	0	0	6	26	78.79	-	-	-	C	234750032	T	C	234750032	3	2	866	1	0	0	0	0	1	0	0	0	7240	1725	60	5	860	5	HJURP	2	234750032	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	1404571	234750032	8449341	18	71199										
PRR21	0	genome.wustl.edu	37	chr2	240982243	240982243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	agggccgtgggtgaagagccGtggatgaagggccatgggtg	21	6	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	2	240982243	240982243	G	A	SNP	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	missense	c.157	p.R53W	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	180	1	0.55	70	10	12.5	-	-	-	A	240982243	G	A	240982243	3	1	866	1	0	0	0	0	1	0	0	0	12673	1144	40	1	1015	1	PRR21	2	240982243	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	6232211	240982243	2217130	19	71200										
SCN10A	0	genome.wustl.edu	37	chr3	38802770	38802770	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gaggttgcccttgaagagttGcagccccaccaaggcaaaaa	11	11	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	38802770	38802770	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	nonsense	c.796	p.Q266*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	64	0	0	6	55	90.16	-	-	-	A	38802770	G	A	38802770	4	1	866	1	0	0	0	0	0	1	0	0	14000	1328	46	4	5162	4	SCN10A	3	38802770	Nonsense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		38802770	159219660	20	71201										
TMPRSS7	0	genome.wustl.edu	37	chr3	111795822	111795822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	agaattgtggtccacgagtaCtataacagtcagacttttga	9	7	1	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	111795822	111795822	C	T	SNP	TMPRSS7	ENST00000419127	human	ensembl	69_37n	1	known	silent	c.1677	p.Y559	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	63	0	0	25	37	59.68	-	-	-	T	111795822	C	T	111795822	2	4	866	1	0	0	0	0	0	0	0	1	16347	576	20	4		4	TMPRSS7	3	111795822	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	72993052	111795822	86226608	21	71202										
CASR	0	genome.wustl.edu	37	chr3	122002995	122002995	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tcctgctggttttcctctgcAccttcatgcagattgtcatc	7	13	3	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	122002995	122002995	A	G	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.2224	p.T742A	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	14	0	0	2	8	80	-	-	-	G	122002995	A	G	122002995	3	3	866	1	0	0	0	0	1	0	0	0	2707	159	6	5	2246	5	CASR	3	122002995	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	10207173	122002995	76019435	22	71203										
SLITRK3	0	genome.wustl.edu	37	chr3	164905992	164905992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tactgccactaccacagcctCccccaggaggaaacagcacc	7	18	0	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	164905992	164905992	C	A	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.2627	p.G876V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	31	0	0	27	21	43.75	-	-	-	A	164905992	C	A	164905992	3	1	866	1	0	0	0	0	1	0	0	0	14833	855	30	2	310	2	SLITRK3	3	164905992	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	42902997	164905992	33116438	23	71204										
YEATS2	0	genome.wustl.edu	37	chr3	183436340	183436340	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	actgcgtgcctgcattgtagCaaactactatgcttctgcag	9	11	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	183436340	183436340	C	G	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.251	p.A84G	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	60	0	0	25	35	58.33	-	-	-	G	183436340	C	G	183436340	3	3	866	1	0	0	0	0	1	0	0	0	17569	710	25	4	261	4	YEATS2	3	183436340	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	18530348	183436340	14586090	24	71205										
ABCC5	0	genome.wustl.edu	37	chr3	183681187	183681187	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccatacctgtaactggtgggTaacaaacagaactgtcttgg	10	9	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	183681187	183681187	T	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.2221	p.T741A	1.000	superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	52	0	0	43	19	30.16	-	-	-	C	183681187	T	C	183681187	3	2	866	1	0	0	0	0	1	0	0	0	56	1638	57	5	2156	5	ABCC5	3	183681187	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	244847	183681187	14341243	25	71206										
MUC4	0	genome.wustl.edu	37	chr3	195515927	195515927	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cagcaattcggttgttgactGggttgtgtgactgtccctgg	14	8	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	3	195515927	195515927	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.2524	p.Q842E	0.006	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	58	0	0	57	13	18.57	-	-	-	C	195515927	G	C	195515927	3	2	866	1	0	0	0	0	1	0	0	0	10050	1357	47	4		4	MUC4	3	195515927	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	11834740	195515927	2506503	26	71207										
KIAA1211	0	genome.wustl.edu	37	chr4	57181137	57181137	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	agaagaaggggacacggagcCtctcctgaaacaagaggggc	15	9	1	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	4	57181137	57181137	C	G	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	1	known	missense	c.1469	p.P490R	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	8	0	0	8	4	33.33	-	-	-	G	57181137	C	G	57181137	3	3	866	1	0	0	0	0	1	0	0	0	8267	681	24	4	1487	4	KIAA1211	4	57181137	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		57181137	133973139	27	71208										
USO1	0	genome.wustl.edu	37	chr4	76708240	76708240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tcgtgtattggtatctcccaCcaaccctcctggtgctacca	7	15	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	4	76708240	76708240	C	T	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.887	p.T296I	0.999	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	62	0	0	86	42	32.81	-	-	-	T	76708240	C	T	76708240	3	4	866	1	0	0	0	0	1	0	0	0	17136	507	18	4	760	4	USO1	4	76708240	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	19527103	76708240	114446036	28	71209										
USO1	0	genome.wustl.edu	37	chr4	76734444	76734444	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tggcaaggatctagatcataTctagttttcaaatctctagg	8	7	5	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	4	76734444	76734444	T	C	SNP	USO1	ENST00000538159	human	ensembl	69_37n	1	known	missense	c.2912	p.I971T	0.000	NULL	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768	39	0	0	31	45	59.21	-	-	-	C	76734444	T	C	76734444	3	2	866	1	0	0	0	0	1	0	0	0	17136	1435	50	5	2820	5	USO1	4	76734444	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	26204	76734444	114419832	29	71210										
PKD2	0	genome.wustl.edu	37	chr4	88940608	88940608	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tttcttcattattattttaaAggtctctggggaacaagact	7	6	3	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	4	88940608	88940608	A	C	SNP	PKD2	ENST00000237596	human	ensembl	69_37n	1	known	splice_site	c.596-2	e2-2	0.999	-	-	-	no_errors	PKD2	HGNC	ENSG00000118762	38	0	0	47	29	38.16	-	-	-	C	88940608	A	C	88940608	5	2	866	1	0	0	0	0	0	0	1	0	12040	86	3	5	600	5	PKD2	4	88940608	Splice_Site	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	12206164	88940608	102213668	30	71211										
FAT4	0	genome.wustl.edu	37	chr4	126369679	126369679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	accaaattctgaactgcattAttctctttcgggtagaaatt	6	8	2	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	4	126369679	126369679	A	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.7508	p.Y2503C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	37	0	0	5	27	84.38	-	-	-	G	126369679	A	G	126369679	3	3	866	1	0	0	0	0	1	0	0	0	5738	449	16	5	7542	5	FAT4	4	126369679	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	37429071	126369679	64784597	31	71212										
SLC45A2	0	genome.wustl.edu	37	chr5	33984320	33984320	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ttacctgctacaacagtagcCccattgaggtacagagccat	8	12	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	5	33984320	33984320	C	A	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	silent	c.369	p.G123	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	38	0	0	25	28	52.83	-	-	-	A	33984320	C	A	33984320	2	1	866	1	0	0	0	0	0	0	0	1	14730	610	22	4		4	SLC45A2	5	33984320	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		33984320	146930940	32	71213										
AQPEP	0	genome.wustl.edu	37	chr5	115346461	115346461	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	caattatattgagattgaaaCagcacttgagttaaccaagt	7	6	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	5	115346461	115346461	C	G	SNP	AQPEP	ENST00000357872	human	ensembl	69_37n	1	known	missense	c.2117	p.T706R	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LVRN	Clone_based_vega_gene	ENSG00000172901	71	0	0	7	51	87.93	-	-	-	G	115346461	C	G	115346461	3	3	866	1	0	0	0	0	1	0	0	0	836	478	17	4	2171	4	AQPEP	5	115346461	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	81362141	115346461	65568799	33	71214										
HSD17B4	0	genome.wustl.edu	37	chr5	118814681	118814681	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	taacaccattgctcctaatgCgggatcacggatgactcaga	9	11	2	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	5	118814681	118814681	C	G	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.587	p.A196G	1.000	prints_DHB_DH	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	45	0	0	5	15	75	-	-	-	G	118814681	C	G	118814681	3	3	866	1	0	0	0	0	1	0	0	0	7437	768	27	3	617	3	HSD17B4	5	118814681	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	3468220	118814681	62100579	34	71215										
DDX41	0	genome.wustl.edu	37	chr5	176939348	176939348	+	Frame_Shift_Del	DEL	G	G	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gctttgttgatgaaggtagtGgcgatgcctgtgtttcccga							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	5	176939348	176939348	G	-	DEL	DDX41	ENST00000507955	human	ensembl	69_37n	-1	known	frame_shift_del	c.1596	p.T533fs	0.987	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	49	0	0	15	2	11.76	-	-	-	-	176939348	G	-	176939348	7	5	866	1	0	1	0	1	0	0	0	0	4392	1335	47	0	284	0	DDX41	5	176939348	Frame_Shift_Del	DEL	G	TCGA-E9-A22G-01A-11D-A159-09	58124667	176939348	3975912	35	71216										
TRIM7	0	genome.wustl.edu	37	chr5	180626095	180626095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ggagctgtgaggtcactcacCtgctcagcgtgcttttgaat	12	10	3	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	5	180626095	180626095	C	T	SNP	TRIM7	ENST00000274773	human	ensembl	69_37n	-1	known	missense	c.872	p.R291K	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,prints_Znf_B-box_chordata,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM7	HGNC	ENSG00000146054	49	0	0	7	19	73.08	-	-	-	T	180626095	C	T	180626095	3	4	866	1	0	0	0	0	1	0	0	0	16639	695	24	4	679	4	TRIM7	5	180626095	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	3686747	180626095	289165	36	71217										
HLA-F	0	genome.wustl.edu	37	chr6	29693318	29693318	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ggagctgtggtcgctgctgtGatgtggaggaagaagagctc	18	6	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	6	29693318	29693318	G	T	SNP	HLA-F	ENST00000444621	human	ensembl	69_37n	1	known	nonstop	c.8	p.*3L	0.003	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-F	HGNC	ENSG00000204642	21	0	0	17	12	41.38	-	-	-	T	29693318	G	T	29693318	4	4	866	1	0	0	0	0	0	0	0	0	7262	1277	45	2	999	2	HLA-F	6	29693318	Nonstop_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		29693318	141421749	37	71218										
NOTCH4	0	genome.wustl.edu	37	chr6	32188059	32188059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gtcttccaagtggcacaggaGtcctggaggggtaagagggg	18	7	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	6	32188059	32188059	G	T	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.1162	p.L388I	0.964	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	32	0	0	32	9	21.95	-	-	-	T	32188059	G	T	32188059	3	4	866	1	0	0	0	0	1	0	0	0	10623	1029	36	4	4945	4	NOTCH4	6	32188059	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	2494741	32188059	138927008	38	71219										
NUDT3	0	genome.wustl.edu	37	chr6	34256620	34256620	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ttggctgagtagccttgcctCaatgtttcaaaatatgatgc	9	8	2	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	6	34256620	34256620	C	G	SNP	NUDT3	ENST00000358797	human	ensembl	69_37n	-1	known	missense	c.429	p.L143F	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT3	HGNC	ENSG00000112664	77	0	0	65	52	44.44	-	-	-	G	34256620	C	G	34256620	3	3	866	1	0	0	0	0	1	0	0	0	10813	825	29	2	93	2	NUDT3	6	34256620	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	2068561	34256620	136858447	39	71220										
C6orf165	0	genome.wustl.edu	37	chr6	88144769	88144769	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	aaacatttattccatattctCaggtaagcagggtcaatatt	6	7	2	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	6	88144769	88144769	C	A	SNP	C6orf165	ENST00000369562	human	ensembl	69_37n	1	known	missense	c.1492	p.Q498K	1.000	NULL	pfam_DUF3508	-	no_errors	C6orf165	HGNC	ENSG00000213204	57	0	0	40	44	52.38	-	-	-	A	88144769	C	A	88144769	3	1	866	1	0	0	0	0	1	0	0	0	2362	827	29	2	1530	2	C6orf165	6	88144769	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	53888149	88144769	82970298	40	71221										
DLX6	0	genome.wustl.edu	37	chr7	96639203	96639203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gaccccctccagggctcggcGgccctgtcgccacgctcgcc	12	21	0	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	7	96639203	96639203	G	A	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	silent	c.726	p.A242	0.800	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	29	0	0	17	12	41.38	-	-	-	A	96639203	G	A	96639203	2	1	866	1	0	0	0	0	0	0	0	1	4611	1103	39	1		1	DLX6	7	96639203	Silent	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		96639203	62499460	41	71222										
FAM160B2	0	genome.wustl.edu	37	chr8	21951949	21951949	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gttgtgtgtctgccctccgcAgcgcgagcccagcattgacc	12	15	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	8	21951949	21951949	A	G	SNP	FAM160B2	ENST00000289921	human	ensembl	69_37n	1	known	splice_site	c.46-2	e2-2	1.000	-	-	-	no_errors	FAM160B2	HGNC	ENSG00000158863	27	0	0	15	7	31.82	-	-	-	G	21951949	A	G	21951949	5	3	866	1	0	0	0	0	0	0	1	0	5511	202	7	5	50	5	FAM160B2	8	21951949	Splice_Site	SNP	A	TCGA-E9-A22G-01A-11D-A159-09		21951949	124412073	42	71223										
EPHX2	0	genome.wustl.edu	37	chr8	27369412	27369412	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccaagtgacatgagccatggGtacgtgacagtaaaggtgag	14	7	0	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	8	27369412	27369412	G	C	SNP	EPHX2	ENST00000521684	human	ensembl	69_37n	1	putative	missense	c.596	p.G199A	0.125	NULL	pfam_AB_hydrolase_1,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPHX2	HGNC	ENSG00000120915	77	0	0	64	31	32.63	-	-	-	C	27369412	G	C	27369412	3	2	866	1	0	0	0	0	1	0	0	0	5217	1248	44	4	742	4	EPHX2	8	27369412	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	5417463	27369412	118994610	43	71224										
HNF4G	0	genome.wustl.edu	37	chr8	76465339	76465339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	aagaaaattgcaagtattggTgatgtctgtgaatctatgaa	10	3	2	4			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	8	76465339	76465339	T	C	SNP	HNF4G	ENST00000396423	human	ensembl	69_37n	1	known	silent	c.522	p.G174	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749	61	0	0	95	37	28.03	-	-	-	C	76465339	T	C	76465339	2	2	866	1	0	0	0	0	0	0	0	1	7305	1683	59	5		5	HNF4G	8	76465339	Silent	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	49095927	76465339	69898683	44	71225										
FCN1	0	genome.wustl.edu	37	chr9	137804958	137804958	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cagccgctcaggaaatacccCcggtctagcaggtccttgca	10	15	2	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	9	137804958	137804958	C	T	SNP	FCN1	ENST00000371806	human	ensembl	69_37n	-1	known	silent	c.372	p.R124	0.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FCN1	HGNC	ENSG00000085265	30	0	0	13	74	85.06	-	-	-	T	137804958	C	T	137804958	2	4	866	1	0	0	0	0	0	0	0	1	5837	610	22	4		4	FCN1	9	137804958	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		137804958	3408473	45	71226										
ERCC6	0	genome.wustl.edu	37	chr10	50681587	50681587	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tggtaccatccatcttgagaTaggtatacttttgggctcta	9	8	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	10	50681587	50681587	T	G	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2645	p.Y882S	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	82	0	0	116	28	19.44	-	-	-	G	50681587	T	G	50681587	3	3	866	1	0	0	0	0	1	0	0	0	5254	1406	49	5	1868	5	ERCC6	10	50681587	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09		50681587	84853160	46	71227										
FAM22D	0	genome.wustl.edu	37	chr10	89124824	89124824	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gctgctggggccttctctcgGggccacgggggagcccgaga	18	13	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	10	89124824	89124824	G	C	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	1	known	missense	c.1382	p.G461A	0.000	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	82	0	0	31	20	39.22	-	-	-	C	89124824	G	C	89124824	3	2	866	1	0	0	0	0	1	0	0	0	5586	1232	43	4	1400	4	FAM22D	10	89124824	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	38443237	89124824	46409923	47	71228										
SHOC2	0	genome.wustl.edu	37	chr10	112745470	112745470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gattggaaactgtacacagaTaaccaaccttgacttgcagc	8	10	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	10	112745470	112745470	T	C	SNP	SHOC2	ENST00000369452	human	ensembl	69_37n	1	known	missense	c.788	p.I263T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061	25	0	0	34	6	15	-	-	-	C	112745470	T	C	112745470	3	2	866	1	0	0	0	0	1	0	0	0	14376	1406	49	5	794	5	SHOC2	10	112745470	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	23620646	112745470	22789277	48	71229										
FAM180B	0	genome.wustl.edu	37	chr11	47608354	47608354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgcagttcctggtttgcctgGtggtagccatttgtctcctc	11	11	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	47608354	47608354	G	A	SNP	FAM180B	ENST00000356737	human	ensembl	69_37n	1	known	missense	c.157	p.V53M	0.000	NULL	NULL	-	no_errors	FAM180B	HGNC	ENSG00000196666	85	0	0	45	25	35.71	-	-	-	A	47608354	G	A	47608354	3	1	866	1	0	0	0	0	1	0	0	0	5548	1261	44	4	36	4	FAM180B	11	47608354	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		47608354	87398162	49	71230										
OR4B1	0	genome.wustl.edu	37	chr11	48238902	48238902	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	actatttctgtgacctccagCctttattcaagcttgcctgc	6	13	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	48238902	48238902	C	G	SNP	OR4B1	ENST00000309562	human	ensembl	69_37n	1	known	missense	c.541	p.P181A	0.002	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4B1	HGNC	ENSG00000175619	42	0	0	54	28	33.73	-	-	-	G	48238902	C	G	48238902	3	3	866	1	0	0	0	0	1	0	0	0	11117	739	26	4	543	4	OR4B1	11	48238902	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	630548	48238902	86767614	50	71231										
LPXN	0	genome.wustl.edu	37	chr11	58317469	58317469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	caggatgggagcagcgcagtAagcacagcgtggagaaaaaa	15	7	0	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	58317469	58317469	A	C	SNP	LPXN	ENST00000528954	human	ensembl	69_37n	-1	known	missense	c.652	p.Y218D	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	35	0	0	22	19	46.34	-	-	-	C	58317469	A	C	58317469	3	2	866	1	0	0	0	0	1	0	0	0	8995	362	13	5	539	5	LPXN	11	58317469	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	10078567	58317469	76689047	51	71232										
DDB1	0	genome.wustl.edu	37	chr11	61071447	61071447	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	caggtagagggccatgatgtTgttgtagtggttgcactcag	15	6	1	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	61071447	61071447	T	G	SNP	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	missense	c.2722	p.N908H	1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	75	0	0	58	35	37.63	-	-	-	G	61071447	T	G	61071447	3	3	866	1	0	0	0	0	1	0	0	0	4354	1812	63	5	724	5	DDB1	11	61071447	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	2753978	61071447	73935069	52	71233										
SLC22A9	0	genome.wustl.edu	37	chr11	63138646	63138646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ctcaatcactgacttcagtgGctaaatttgtattcatggct	7	9	4	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	63138646	63138646	G	A	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	1	known	missense	c.442	p.A148T	0.002	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	84	0	0	73	37	33.64	-	-	-	A	63138646	G	A	63138646	3	1	866	1	0	0	0	0	1	0	0	0	14550	1203	42	4	448	4	SLC22A9	11	63138646	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	2067199	63138646	71867870	53	71234										
ALDH3B1	0	genome.wustl.edu	37	chr11	67795240	67795240	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccagtgggatgggccggtacCatggcaagttctccttcgac	13	12	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	67795240	67795240	C	A	SNP	ALDH3B1	ENST00000007633	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	33	0	0	28	14	33.33	-	-	-	A	67795240	C	A	67795240	1	1	866	0	1	0	0	0	0	0	0	0	499	594	21	4		4	ALDH3B1	11	67795240	RNA	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	4656594	67795240	67211276	54	71235										
STARD10	0	genome.wustl.edu	37	chr11	72492197	72492197	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	aggaccggccgaggcccttgGggctctgtagaggccgccag	17	13	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	11	72492197	72492197	G	T	SNP	STARD10	ENST00000334805	human	ensembl	69_37n	-1	known	silent	c.30	p.P10	0.058	NULL	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD10	HGNC	ENSG00000214530	19	0	0	15	16	51.61	-	-	-	T	72492197	G	T	72492197	2	4	866	1	0	0	0	0	0	0	0	1	15346	1219	43	4		4	STARD10	11	72492197	Silent	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	4696957	72492197	62514319	55	71236										
WNK1	0	genome.wustl.edu	37	chr12	994697	994697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tttggtcattccatcagtgaTagcttctactcctattcttc	5	11	4	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	994697	994697	T	C	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	missense	c.6221	p.I2074T	0.015	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	38	0	0	64	20	23.81	-	-	-	C	994697	T	C	994697	3	2	866	1	0	0	0	0	1	0	0	0	17474	1406	49	5	6303	5	WNK1	12	994697	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09		994697	132857198	56	71237										
TAS2R10	0	genome.wustl.edu	37	chr12	10978499	10978499	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gggaagaaccatatttgttcTgctcttcaaccagagaaata	8	8	3	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	10978499	10978499	T	C	SNP	TAS2R10	ENST00000240619	human	ensembl	69_37n	-1	known	missense	c.370	p.R124G	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R10	HGNC	ENSG00000121318	21	0	0	16	35	68.63	-	-	-	C	10978499	T	C	10978499	3	2	866	1	0	0	0	0	1	0	0	0	15658	1588	55	5	557	5	TAS2R10	12	10978499	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	9983802	10978499	122873396	57	71238										
EPS8	0	genome.wustl.edu	37	chr12	15803878	15803878	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	taaagttcagcattgggggcTcccagccattgcggaatcgt	12	10	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	15803878	15803878	T	A	SNP	EPS8	ENST00000281172	human	ensembl	69_37n	-1	known	missense	c.1313	p.E438V	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491	82	0	0	129	50	27.93	-	-	-	A	15803878	T	A	15803878	3	1	866	1	0	0	0	0	1	0	0	0	5231	1551	54	5	1187	5	EPS8	12	15803878	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	4825379	15803878	118048017	58	71239										
PLCZ1	0	genome.wustl.edu	37	chr12	18852863	18852863	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gacaagatcagataaggccaGagcaatttttagcttcctgg	10	8	1	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	18852863	18852863	G	A	SNP	PLCZ1	ENST00000540270	human	ensembl	69_37n	-1	known	missense	c.653	p.S218F	0.017	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCZ1	HGNC	ENSG00000139151	47	0	0	38	23	37.7	-	-	-	A	18852863	G	A	18852863	3	1	866	1	0	0	0	0	1	0	0	0	12118	933	33	2	811	2	PLCZ1	12	18852863	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	3048985	18852863	114999032	59	71240										
FAM60A	0	genome.wustl.edu	37	chr12	31435670	31435670	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cactcctgagtggagatgggCagaggctctggcccctgctc	14	13	1	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	31435670	31435670	C	A	SNP	FAM60A	ENST00000337682	human	ensembl	69_37n	-1	known	silent	c.642	p.L214	1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146	22	0	0	26	23	46.94	-	-	-	A	31435670	C	A	31435670	2	1	866	1	0	0	0	0	0	0	0	1	5640	697	25	4		4	FAM60A	12	31435670	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	12582807	31435670	102416225	60	71241										
ACVR1B	0	genome.wustl.edu	37	chr12	52374849	52374849	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ggaagtatggcggggccgctGgaggggtggtgatgtggctg	23	5	0	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	52374849	52374849	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	1	known	nonsense	c.677	p.W226*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	43	0	0	7	35	83.33	-	-	-	A	52374849	G	A	52374849	4	1	866	1	0	0	0	0	0	1	0	0	221	1357	47	4	691	4	ACVR1B	12	52374849	Nonsense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	20939179	52374849	81477046	61	71242										
KCNC2	0	genome.wustl.edu	37	chr12	75444928	75444928	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	accacaccacacacactcctTctacatacgtcaaggcagga	5	16	2	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	12	75444928	75444928	T	A	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	missense	c.857	p.E286V	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	83	0	0	52	13	20	-	-	-	A	75444928	T	A	75444928	3	1	866	1	0	0	0	0	1	0	0	0	8069	1783	62	5	1137	5	KCNC2	12	75444928	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	23070079	75444928	58406967	62	71243										
GJB6	0	genome.wustl.edu	37	chr13	20797418	20797418	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gatgtgggacaccgggaaaaAgtggtcatagcacacatttt	12	7	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	13	20797418	20797418	A	T	SNP	GJB6	ENST00000241124	human	ensembl	69_37n	-1	known	missense	c.202	p.F68I	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742	30	0	0	8	14	63.64	-	-	-	T	20797418	A	T	20797418	3	4	866	1	0	0	0	0	1	0	0	0	6464	72	3	5	587	5	GJB6	13	20797418	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09		20797418	94372460	63	71244										
GRK1	0	genome.wustl.edu	37	chr13	114324074	114324074	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgtctctggcctatgcgtttGaaaccaaagccgacctctgt	9	12	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	13	114324074	114324074	G	C	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	missense	c.772	p.E258Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	65	0	0	28	43	60.56	-	-	-	C	114324074	G	C	114324074	3	2	866	1	0	0	0	0	1	0	0	0	6841	1291	45	2	778	2	GRK1	13	114324074	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	93526656	114324074	845804	64	71245										
GRK1	0	genome.wustl.edu	37	chr13	114325949	114325949	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	taccgcgacctcaagcccgaGaacgtgctgctggacaatga	11	13	1	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	13	114325949	114325949	G	C	SNP	GRK1	ENST00000335678	human	ensembl	69_37n	1	known	missense	c.963	p.E321D	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	16	0	0	11	5	31.25	-	-	-	C	114325949	G	C	114325949	3	2	866	1	0	0	0	0	1	0	0	0	6841	933	33	2	973	2	GRK1	13	114325949	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	1875	114325949	843929	65	71246										
APEX1	0	genome.wustl.edu	37	chr14	20924849	20924849	+	Frame_Shift_Del	DEL	A	A	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ggtaaaggaagaagccccagAtatactgtgccttcaagaga							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	14	20924849	20924849	A	-	DEL	APEX1	ENST00000216714	human	ensembl	69_37n	1	known	frame_shift_del	c.269	p.D90fs	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX1	HGNC	ENSG00000100823	29	0	0	12	2	14.29	-	-	-	-	20924849	A	-	20924849	7	5	866	1	0	1	0	1	0	0	0	0	770	333	12	0	279	0	APEX1	14	20924849	Frame_Shift_Del	DEL	A	TCGA-E9-A22G-01A-11D-A159-09		20924849	86424691	66	71247										
MAP1A	0	genome.wustl.edu	37	chr15	43821506	43821506	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	agggcgcagggccccaggcaAggccaagccagcgtcccctg	15	16	0	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	15	43821506	43821506	A	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.7835	p.K2612T	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	21	0	0	2	11	84.62	-	-	-	C	43821506	A	C	43821506	3	2	866	1	0	0	0	0	1	0	0	0	9298	72	3	5	7837	5	MAP1A	15	43821506	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09		43821506	58709886	67	71248										
GOLGA6A	0	genome.wustl.edu	37	chr15	74368107	74368107	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	atattcgtctcgctctagctGgacttgttttagtgactctg	9	9	3	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	15	74368107	74368107	G	T	SNP	GOLGA6A	ENST00000290438	human	ensembl	69_37n	-1	known	missense	c.676	p.Q226K	0.154	NULL	NULL	-	no_errors	GOLGA6A	HGNC	ENSG00000159289	8	0	0	5	5	50	-	-	-	T	74368107	G	T	74368107	3	4	866	1	0	0	0	0	1	0	0	0	6609	1357	47	4	1445	4	GOLGA6A	15	74368107	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	30546601	74368107	28163285	68	71249										
BAIAP3	0	genome.wustl.edu	37	chr16	1395871	1395871	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	accctgcccaggctcaggggCtgggcacccagcttggccag	14	16	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	16	1395871	1395871	C	T	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	silent	c.2293	p.L765	0.724	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	10	0	0	0	7	100	-	-	-	T	1395871	C	T	1395871	2	4	866	1	0	0	0	0	0	0	0	1	1308	796	28	4		4	BAIAP3	16	1395871	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		1395871	88958882	69	71250										
SEZ6L2	0	genome.wustl.edu	37	chr16	29899936	29899936	+	Frame_Shift_Del	DEL	G	G	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gagggtctcctctccctgcaGctggtagcccgaatcacagt							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	16	29899936	29899936	G	-	DEL	SEZ6L2	ENST00000308713	human	ensembl	69_37n	-1	known	frame_shift_del	c.964	p.L322fs	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938	37	0	0	6	18	75	-	-	-	-	29899936	G	-	29899936	7	5	866	1	0	1	0	1	0	0	0	0	14232	962	34	0	1859	0	SEZ6L2	16	29899936	Frame_Shift_Del	DEL	G	TCGA-E9-A22G-01A-11D-A159-09	28504065	29899936	60454817	70	71251										
ZNF785	0	genome.wustl.edu	37	chr16	30593995	30593995	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	acggcctgctgccacgcgcgCctctcgctgcaggagcggtg	15	16	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	16	30593995	30593995	C	A	SNP	ZNF785	ENST00000395216	human	ensembl	69_37n	-1	known	missense	c.1104	p.R368S	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	21	0	0	5	8	57.14	-	-	-	A	30593995	C	A	30593995	3	1	866	1	0	0	0	0	1	0	0	0	18250	738	26	4	117	4	ZNF785	16	30593995	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	694059	30593995	59760758	71	71252										
PRDM7	0	genome.wustl.edu	37	chr16	90142278	90142278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tccgctctgttctctctgtgTctccttctgggctctcctct	7	16	7	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	16	90142278	90142278	T	C	SNP	PRDM7	ENST00000449207	human	ensembl	69_37n	-1	known	missense	c.41	p.D14G	0.001	NULL	pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_SET_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM7	HGNC	ENSG00000126856	60	0	0	14	50	78.12	-	-	-	C	90142278	T	C	90142278	3	2	866	1	0	0	0	0	1	0	0	0	12542	1667	58	5	1477	5	PRDM7	16	90142278	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	59548283	90142278	212475	72	71253										
BCL6B	0	genome.wustl.edu	37	chr17	6928049	6928050	+	Frame_Shift_Del	DEL	GT	GT	-													0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	cagcagcagcagcagcagcaGtgaagaaggacccattcctg							TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	6928049	6928050	GT	-	DEL	BCL6B	ENST00000293805	human	ensembl	69_37n	1	known	frame_shift_del	c.731_732	p.S244fs	0.972:0.064	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940	11	0	0	7	4	36.36	-	-	-	-	6928050	GT	-	6928049	7	5	866	1	0	1	0	1	0	0	0	0	1381	1029	36	0	741	0	BCL6B	17	6928049	Frame_Shift_Del	DEL	GT	TCGA-E9-A22G-01A-11D-A159-09		6928049	74267161	73	71254										
GUCY2D	0	genome.wustl.edu	37	chr17	7909959	7909959	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tccgccggtacccggatgcaCttcccgcgtgggggatcagc	14	15	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	7909959	7909959	C	A	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	missense	c.1305	p.H435Q	0.999	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	19	0	0	5	4	44.44	-	-	-	A	7909959	C	A	7909959	3	1	866	1	0	0	0	0	1	0	0	0	6948	564	20	4	1315	4	GUCY2D	17	7909959	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	981910	7909959	73285251	74	71255										
MYOCD	0	genome.wustl.edu	37	chr17	12659782	12659782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gcttctctccccattcttccAgcctccacccgcccttctct	3	22	3	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	12659782	12659782	A	G	SNP	MYOCD	ENST00000425538	human	ensembl	69_37n	1	known	missense	c.2110	p.S704G	0.843	NULL	pfam_RPEL_repeat,pfam_SAP_DNA-bd,smart_RPEL_repeat,smart_SAP_DNA-bd,pfscan_RPEL_repeat,pfscan_SAP_DNA-bd	-	no_errors	MYOCD	HGNC	ENSG00000141052	22	0	0	6	15	71.43	-	-	-	G	12659782	A	G	12659782	3	3	866	1	0	0	0	0	1	0	0	0	10159	188	7	5	2152	5	MYOCD	17	12659782	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	4749823	12659782	68535428	75	71256										
NCOR1	0	genome.wustl.edu	37	chr17	15942922	15942922	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ataatgtcttccagcccaagAttactggcaggatcagcaaa	8	10	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	15942922	15942922	A	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.6780	p.N2260K	0.997	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	42	0	0	5	18	78.26	-	-	-	T	15942922	A	T	15942922	3	4	866	1	0	0	0	0	1	0	0	0	10307	330	12	5	554	5	NCOR1	17	15942922	Missense_Mutation	SNP	A	TCGA-E9-A22G-01A-11D-A159-09	3283140	15942922	65252288	76	71257										
PSMD12	0	genome.wustl.edu	37	chr17	65340892	65340892	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgtggtaaaaagctttaaaaGatccctgaaaattgtataca	7	5	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	65340892	65340892	G	T	SNP	PSMD12	ENST00000356126	human	ensembl	69_37n	-1	known	missense	c.913	p.L305I	1.000	pfam_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170	37	0	0	31	23	42.59	-	-	-	T	65340892	G	T	65340892	3	4	866	1	0	0	0	0	1	0	0	0	12775	942	33	2	469	2	PSMD12	17	65340892	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	49397970	65340892	15854318	77	71258										
QRICH2	0	genome.wustl.edu	37	chr17	74303558	74303558	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gtgctcaccctggcaaagctGagctcctcggcggcgtcctt	12	15	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	74303558	74303558	G	T	SNP	QRICH2	ENST00000262765	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	0.001	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	11	0	0	5	19	79.17	-	-	-	T	74303558	G	T	74303558	2	4	866	1	0	0	0	0	0	0	0	1	12963	1277	45	2		2	QRICH2	17	74303558	Silent	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	8962666	74303558	6891652	78	71259										
SIRT7	0	genome.wustl.edu	37	chr17	79872224	79872224	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gctctgctggcagcctcggtCgccgcttcccagttcaaagg	12	15	2	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	17	79872224	79872224	C	G	SNP	SIRT7	ENST00000328666	human	ensembl	69_37n	-1	known	silent	c.762	p.A254	0.542	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT7	HGNC	ENSG00000187531	24	0	0	5	6	54.55	-	-	-	G	79872224	C	G	79872224	2	3	866	1	0	0	0	0	0	0	0	1	14432	871	31	3		3	SIRT7	17	79872224	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	5568666	79872224	1322986	79	71260										
SMCHD1	0	genome.wustl.edu	37	chr18	2750494	2750494	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	tgcatccttcttagcaggggGtcttttcactggtgagtatt	11	8	3	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	18	2750494	2750494	G	C	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.4154	p.G1385A	0.017	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	39	0	0	53	19	26.39	-	-	-	C	2750494	G	C	2750494	3	2	866	1	0	0	0	0	1	0	0	0	14877	1261	44	4	4280	4	SMCHD1	18	2750494	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		2750494	75326754	80	71261										
ZNF99	0	genome.wustl.edu	37	chr19	22939859	22939859	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ttgtacgatttctccctagtAtgaattagcttatgtttctt	6	7	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	19	22939859	22939859	A	G	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	silent	c.2472	p.H824	0.963	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	52	0	0	93	27	22.5	-	-	-	G	22939859	A	G	22939859	2	3	866	1	0	0	0	0	0	0	0	1	18297	446	16	5		5	ZNF99	19	22939859	Silent	SNP	A	TCGA-E9-A22G-01A-11D-A159-09		22939859	36189124	81	71262										
ZBTB32	0	genome.wustl.edu	37	chr19	36207192	36207192	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	atggagacgcactaccgagtCcacacaggtatgggcgccct	12	13	0	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	19	36207192	36207192	C	T	SNP	ZBTB32	ENST00000262630	human	ensembl	69_37n	1	known	silent	c.1182	p.V394	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590	15	0	0	20	20	50	-	-	-	T	36207192	C	T	36207192	2	4	866	1	0	0	0	0	0	0	0	1	17631	842	30	2		2	ZBTB32	19	36207192	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	13267333	36207192	22921791	82	71263										
ZNF569	0	genome.wustl.edu	37	chr19	37904029	37904029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	agtatgaactttttgatgtgTaatgaagttttgcttttggc	10	3	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	19	37904029	37904029	T	C	SNP	ZNF569	ENST00000316950	human	ensembl	69_37n	-1	known	missense	c.1531	p.T511A	0.225	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	39	0	0	79	46	36.8	-	-	-	C	37904029	T	C	37904029	3	2	866	1	0	0	0	0	1	0	0	0	18096	1638	57	5	533	5	ZNF569	19	37904029	Missense_Mutation	SNP	T	TCGA-E9-A22G-01A-11D-A159-09	1696837	37904029	21224954	83	71264										
MYH7B	0	genome.wustl.edu	37	chr20	33584219	33584219	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gctgaccaaggagaagaaggCgttgcaggaggcccaccaac	14	11	0	3			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	20	33584219	33584219	C	G	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.3140	p.A1047G	1.000	superfamily_tRNA-bd_arm	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	13	0	0	13	14	51.85	-	-	-	G	33584219	C	G	33584219	3	3	866	1	0	0	0	0	1	0	0	0	10112	768	27	3	3246	3	MYH7B	20	33584219	Missense_Mutation	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		33584219	29441301	84	71265										
SPO11	0	genome.wustl.edu	37	chr20	55909042	55909042	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	atgtattttaaattttcataGggacatatattacactgaca	5	5	1	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	20	55909042	55909042	G	A	SNP	SPO11	ENST00000371263	human	ensembl	69_37n	1	known	splice_site	c.402-1	e5-1	1.000	-	-	-	no_errors	SPO11	HGNC	ENSG00000054796	27	0	0	7	14	66.67	-	-	-	A	55909042	G	A	55909042	5	1	866	1	0	0	0	0	0	0	1	0	15168	1014	35	4	419	4	SPO11	20	55909042	Splice_Site	SNP	G	TCGA-E9-A22G-01A-11D-A159-09	22324823	55909042	7116478	85	71266										
TRPM2	0	genome.wustl.edu	37	chr21	45784057	45784057	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ttggaggaggctaccaagccCcacaccttccagggcacaca	10	15	0	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	21	45784057	45784057	C	G	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.315	p.P105	0.114	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	32	0	0	21	8	27.59	-	-	-	G	45784057	C	G	45784057	2	3	866	1	0	0	0	0	0	0	0	1	16682	610	22	4		4	TRPM2	21	45784057	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09		45784057	2345838	86	71267										
ATP6V1E1	0	genome.wustl.edu	37	chr22	18077351	18077351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	gttggaaacctttattttacGatctccattatagatctcaa	5	8	2	1			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	22	18077351	18077351	G	A	SNP	ATP6V1E1	ENST00000253413	human	ensembl	69_37n	-1	known	missense	c.562	p.R188C	0.984	pfam_ATPase_V1/A1-cplx_esu	pfam_ATPase_V1/A1-cplx_esu	-	no_errors	ATP6V1E1	HGNC	ENSG00000131100	31	0	0	34	26	43.33	-	-	-	A	18077351	G	A	18077351	3	1	866	1	0	0	0	0	1	0	0	0	1187	1058	37	1	126	1	ATP6V1E1	22	18077351	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		18077351	33227215	87	71268										
TOM1	0	genome.wustl.edu	37	chr22	35729468	35729468	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccagcagccaccggcaacctCtcatcccagctggcaggaat	9	17	1	0			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	22	35729468	35729468	C	G	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	1	known	silent	c.1005	p.L335	0.999	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	20	0	0	16	11	40.74	-	-	-	G	35729468	C	G	35729468	2	3	866	1	0	0	0	0	0	0	0	1	16446	900	32	2		2	TOM1	22	35729468	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	17652117	35729468	15575098	88	71269										
HMOX1	0	genome.wustl.edu	37	chr22	35779123	35779123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	ccccaggatttgtcagaggcCctgaaggaggccaccaagga	13	12	1	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	22	35779123	35779123	C	T	SNP	HMOX1	ENST00000216117	human	ensembl	69_37n	1	known	silent	c.48	p.A16	0.999	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX1	HGNC	ENSG00000100292	43	0	0	26	22	45.83	-	-	-	T	35779123	C	T	35779123	2	4	866	1	0	0	0	0	0	0	0	1	7294	610	22	4		4	HMOX1	22	35779123	Silent	SNP	C	TCGA-E9-A22G-01A-11D-A159-09	49655	35779123	15525443	89	71270										
HEPH	0	genome.wustl.edu	37	chrX	65409615	65409615	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0777777777777778	7	0.563863862959083	1.35568835768039	1.93669765382913	0.774679061531651	0.378260869565217	0.991179622791967	0	acttgtttggcatgggcaatGaaattgatgtccacacagca	10	8	0	2			TCGA-E9-A22G-01A-11D-A159-09	TCGA-E9-A22G-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2be1b92a-6041-4d2b-9cf8-b9723921987f	b88f0c85-3a9c-44fa-a09a-563e6cf8521f	X	65409615	65409615	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	1	known	missense	c.1060	p.E354K	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	105	0	0	60	14	18.92	-	-	-	A	65409615	G	A	65409615	3	1	866	1	0	0	0	0	1	0	0	0	7105	1291	45	2	1082	2	HEPH	23	65409615	Missense_Mutation	SNP	G	TCGA-E9-A22G-01A-11D-A159-09		65409615	89860945	90	71271										
EYA3	0	genome.wustl.edu	37	chr1	28304975	28304975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacacaattctctcaaagcaGctctccttacctgatgagaa	6	12	3	2			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	28304975	28304975	G	C	SNP	EYA3	ENST00000373871	human	ensembl	69_37n	-1	known	missense	c.1551	p.S517R	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161	83	0	0	88	23	20.72	-	-	-	C	28304975	G	C	28304975	3	2	867	1	0	0	0	0	1	0	0	0	5367	962	34	4	178	4	EYA3	1	28304975	Missense_Mutation	SNP	G	TCGA-E9-A22H-01A-11D-A159-09		28304975	220945646	1	71272										
DHCR24	0	genome.wustl.edu	37	chr1	55331049	55331049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gaatgtactccaggccctctCggtttgtcttcagatagttc	9	11	3	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	55331049	55331049	C	T	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.947	p.R316Q	0.001	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	61	0	0	42	21	33.33	-	-	-	T	55331049	C	T	55331049	3	4	867	1	0	0	0	0	1	0	0	0	4512	884	31	1	619	1	DHCR24	1	55331049	Missense_Mutation	SNP	C	TCGA-E9-A22H-01A-11D-A159-09	27026074	55331049	193919572	2	71273										
CASP8	0	genome.wustl.edu	37	chr2	202141586	202141586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	accaaatgaaaagcaaacctCggggatactgtctgatcatc	8	10	2	2			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	2	202141586	202141586	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	missense	c.874	p.R292W	1.000	superfamily_DEATH-like,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	46	0	0	55	10	15.38	-	-	-	T	202141586	C	T	202141586	3	4	867	1	0	0	0	0	1	0	0	0	2702	893	31	1	1000	1	CASP8	2	202141586	Missense_Mutation	SNP	C	TCGA-E9-A22H-01A-11D-A159-09		202141586	41057787	3	71274										
CNTN3	0	genome.wustl.edu	37	chr3	74315673	74315673	+	Frame_Shift_Del	DEL	T	T	-													0	0	1	0	0	0	1	1	0	tctgttcactactggtcccaTcccctccatctgttgtggcc							TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	3	74315673	74315673	T	-	DEL	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	frame_shift_del	c.2945	p.D982fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	95	0	0	78	26	24.53	-	-	-	-	74315673	T	-	74315673	7	5	867	1	0	1	0	1	0	0	0	0	3672	1435	50	0	149	0	CNTN3	3	74315673	Frame_Shift_Del	DEL	T	TCGA-E9-A22H-01A-11D-A159-09		74315673	123706757	4	71275										
ADAM29	0	genome.wustl.edu	37	chr4	175897839	175897839	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gacaaagtgtttgcttgaaaCagtacacacaaaggacatct	8	8	1	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	4	175897839	175897839	C	G	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.1163	p.T388R	0.000	pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	81	0	0	41	26	38.81	-	-	-	G	175897839	C	G	175897839	3	3	867	1	0	0	0	0	1	0	0	0	247	478	17	4	1165	4	ADAM29	4	175897839	Missense_Mutation	SNP	C	TCGA-E9-A22H-01A-11D-A159-09		175897839	15256437	5	71276										
MAP3K1	0	genome.wustl.edu	37	chr5	56161678	56161678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgagagtttgttccagaaatAtcacagtaggcgtagctcaa	10	7	2	2			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	5	56161678	56161678	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	missense	c.1175	p.Y392C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	51	0	0	41	22	34.92	-	-	-	G	56161678	A	G	56161678	3	3	867	1	0	0	0	0	1	0	0	0	9314	449	16	5	1197	5	MAP3K1	5	56161678	Missense_Mutation	SNP	A	TCGA-E9-A22H-01A-11D-A159-09		56161678	124753582	6	71277										
F13A1	0	genome.wustl.edu	37	chr6	6182361	6182361	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttagctgtaatgtaaatgAggtcgctgttgacctggaaa	11	6	1	2			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	6182361	6182361	A	T	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	missense	c.1319	p.L440H	0.125	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	67	0	0	41	8	16.33	-	-	-	T	6182361	A	T	6182361	3	4	867	1	0	0	0	0	1	0	0	0	5377	304	11	5	899	5	F13A1	6	6182361	Missense_Mutation	SNP	A	TCGA-E9-A22H-01A-11D-A159-09		6182361	164932706	7	71278										
HDDC2	0	genome.wustl.edu	37	chr6	125598270	125598270	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gctgtggaatcatagaagtcTtgcagtctcccaggtttgtg	12	8	3	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	125598270	125598270	T	A	SNP	HDDC2	ENST00000398153	human	ensembl	69_37n	-1	known	missense	c.495	p.Q165H	0.980	NULL	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906	78	0	0	61	34	35.79	-	-	-	A	125598270	T	A	125598270	3	1	867	1	0	0	0	0	1	0	0	0	7067	1606	56	5	127	5	HDDC2	6	125598270	Missense_Mutation	SNP	T	TCGA-E9-A22H-01A-11D-A159-09	119415909	125598270	45516797	8	71279										
SRRT	0	genome.wustl.edu	37	chr7	100485396	100485396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggaagtgaaaaaggaagtcGcgttttttaacaacttcctc	9	7	0	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	100485396	100485396	G	A	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	1	known	missense	c.2239	p.A747T	0.968	pfam_Arsenite-R_2	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	31	0	0	28	17	37.78	-	-	-	A	100485396	G	A	100485396	3	1	867	1	0	0	0	0	1	0	0	0	15263	1087	38	1	2304	1	SRRT	7	100485396	Missense_Mutation	SNP	G	TCGA-E9-A22H-01A-11D-A159-09		100485396	58653267	9	71280										
MDFIC	0	genome.wustl.edu	37	chr7	114619630	114619631	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	ggtgaggaaataggcaagatINSaaagaacggccacacaggtc							TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	114619630	114619631	-	A	INS	MDFIC	ENST00000393486	human	ensembl	69_37n	1	known	frame_shift_ins	c.287_288	p.N98fs	1.000:1.000	NULL	NULL	-	no_errors	MDFIC	HGNC	ENSG00000135272	39	0	0	38	12	24	-	-	-	A	114619631	-	A	114619630	7	5	867	1	0	1	1	0	0	0	0	0	9476	1406	49	0	670	0	MDFIC	7	114619630	Frame_Shift_Ins	INS	-	TCGA-E9-A22H-01A-11D-A159-09	14134234	114619630	44519033	10	71281										
FAM120A	0	genome.wustl.edu	37	chr9	96294650	96294650	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cattgtttgttttcctcggtAcctcgtaatctcttgtgcat	7	10	1	0			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	9	96294650	96294650	A	G	SNP	FAM120A	ENST00000446420	human	ensembl	69_37n	1	known	silent	c.1476	p.V492	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM120A	HGNC	ENSG00000048828	13	0	0	15	7	31.82	-	-	-	G	96294650	A	G	96294650	2	3	867	1	0	0	0	0	0	0	0	1	5455	406	14	5		5	FAM120A	9	96294650	Silent	SNP	A	TCGA-E9-A22H-01A-11D-A159-09		96294650	44918781	11	71282										
WSCD2	0	genome.wustl.edu	37	chr12	108626636	108626636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggccacaggcttctacactGgcagctactacttcgatggc	10	13	1	0			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	108626636	108626636	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.1108	p.G370S	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	25	0	0	25	9	26.47	-	-	-	A	108626636	G	A	108626636	3	1	867	1	0	0	0	0	1	0	0	0	17504	1348	47	4	1130	4	WSCD2	12	108626636	Missense_Mutation	SNP	G	TCGA-E9-A22H-01A-11D-A159-09		108626636	25225259	12	71283										
VPS13C	0	genome.wustl.edu	37	chr15	62214879	62214879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gattttccatttccttagacGtatctttggatccatcttct	5	10	3	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	15	62214879	62214879	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.6692	p.T2231M	0.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	45	0	0	59	7	10.61	-	-	-	A	62214879	G	A	62214879	3	1	867	1	0	0	0	0	1	0	0	0	17288	1145	40	1	4725	1	VPS13C	15	62214879	Missense_Mutation	SNP	G	TCGA-E9-A22H-01A-11D-A159-09		62214879	40316513	13	71284										
CCDC135	0	genome.wustl.edu	37	chr16	57760065	57760065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtttctggtcgcggaggagcGcatccagctgcgctaccact	13	13	1	0			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	57760065	57760065	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	1	known	missense	c.1844	p.R615H	1.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	19	0	0	8	8	50	-	-	-	A	57760065	G	A	57760065	3	1	867	1	0	0	0	0	1	0	0	0	2794	1087	38	1	1890	1	CCDC135	16	57760065	Missense_Mutation	SNP	G	TCGA-E9-A22H-01A-11D-A159-09		57760065	32594688	14	71285										
TAT	0	genome.wustl.edu	37	chr16	71603760	71603761	+	Frame_Shift_Ins	INS	-	-	AGGT													0	0	1	0	0	0	1	1	0	ccacccacatactcaccatgINSaggtacatagccccagaagg							TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	71603760	71603761	-	AGGT	INS	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1122_1121	p.M375fs	0.990:1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	17	0	0	10	4	28.57	-	-	-	AGGT	71603761	-	AGGT	71603760	7	5	867	1	0	1	1	0	0	0	0	0	15682	1277	45	0	254	0	TAT	16	71603760	Frame_Shift_Ins	INS	-	TCGA-E9-A22H-01A-11D-A159-09	13843695	71603760	18750993	15	71286										
CLEC10A	0	genome.wustl.edu	37	chr17	6979420	6979420	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acacagatgggcagtggggaCagtggcctaggtgtgccttc	16	9	0	1			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	17	6979420	6979420	C	G	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	missense	c.404	p.C135S	0.000	NULL	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC10A	HGNC	ENSG00000132514	29	0	0	21	5	19.23	-	-	-	G	6979420	C	G	6979420	3	3	867	1	0	0	0	0	1	0	0	0	3525	478	17	4	571	4	CLEC10A	17	6979420	Missense_Mutation	SNP	C	TCGA-E9-A22H-01A-11D-A159-09		6979420	74215790	16	71287										
MED12	0	genome.wustl.edu	37	chrX	70356283	70356284	+	Frame_Shift_Ins	INS	-	-	CA													0	0	1	0	0	0	1	1	0	agcagcggttgctgctctacINScacacacacctgaggccccg							TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	X	70356283	70356284	-	CA	INS	MED12	ENST00000333646	human	ensembl	69_37n	1	known	frame_shift_ins	c.5178_5179	p.L1729fs	1.000:1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	21	0	0	30	7	18.92	-	-	-	CA	70356284	-	CA	70356283	7	5	867	1	0	1	1	0	0	0	0	0	9499	518	18	0	5324	0	MED12	23	70356283	Frame_Shift_Ins	INS	-	TCGA-E9-A22H-01A-11D-A159-09		70356283	84914277	17	71288										
PIK3CD	0	genome.wustl.edu	37	chr1	9781585	9781585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ggactgcgagctgaccaaatTcctgctggaccgggccctgg	14	13	0	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	9781585	9781585	T	C	SNP	PIK3CD	ENST00000536656	human	ensembl	69_37n	1	known	missense	c.1967	p.F656S	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	56	0	0	32	8	20	-	-	-	C	9781585	T	C	9781585	3	2	868	1	0	0	0	0	1	0	0	0	11989	1783	62	5	1945	5	PIK3CD	1	9781585	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09		9781585	239469036	1	71289										
CA14	0	genome.wustl.edu	37	chr1	150230552	150230552	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ctccgccctcctgctggaggTgatttggatcctggctgcag	13	13	0	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	150230552	150230552	T	A	SNP	CA14	ENST00000369111	human	ensembl	69_37n	1	known	missense	c.29	p.V10E	1.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298	218	0	0	150	33	17.93	-	-	-	A	150230552	T	A	150230552	3	1	868	1	0	0	0	0	1	0	0	0	2540	1696	59	5	31	5	CA14	1	150230552	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	140448967	150230552	99020069	2	71290										
HRNR	0	genome.wustl.edu	37	chr1	152192919	152192919	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ctgaccatagctggaagactGacgtgagctggagccatgtt	13	9	0	4			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	152192919	152192919	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	nonsense	c.1186	p.Q396*	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	133	0	0	106	24	18.46	-	-	-	A	152192919	G	A	152192919	4	1	868	1	0	0	0	0	0	1	0	0	7410	1299	45	2	7370	2	HRNR	1	152192919	Nonsense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	1962367	152192919	97057702	3	71291										
RD3	0	genome.wustl.edu	37	chr1	211652657	211652657	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tcgggctcctgctccgccagCagctgccggaacctgggcgg	15	16	0	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	211652657	211652657	C	T	SNP	RD3	ENST00000367002	human	ensembl	69_37n	-1	known	silent	c.309	p.L103	0.207	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570	20	0	0	18	4	18.18	-	-	-	T	211652657	C	T	211652657	2	4	868	1	0	0	0	0	0	0	0	1	13270	697	25	4		4	RD3	1	211652657	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09	59459738	211652657	37597964	4	71292										
EIF5B	0	genome.wustl.edu	37	chr2	100007074	100007074	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	caatgggcgtttgaaggaagGagatacaatcattgttcctg	12	6	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	100007074	100007074	G	C	SNP	EIF5B	ENST00000289371	human	ensembl	69_37n	1	known	missense	c.2654	p.G885A	1.000	pfam_Transl_elong_EFTu/EF1A_2	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_TIF_IF2_dom3,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	86	0	0	69	24	25.81	-	-	-	C	100007074	G	C	100007074	3	2	868	1	0	0	0	0	1	0	0	0	5081	1174	41	2	2720	2	EIF5B	2	100007074	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		100007074	143192299	5	71293										
FMNL2	0	genome.wustl.edu	37	chr2	153435429	153435429	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tcaacatggtcatgtctcatCcacacgctgtcaatgagatt	7	11	4	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	153435429	153435429	C	G	SNP	FMNL2	ENST00000288670	human	ensembl	69_37n	1	known	missense	c.733	p.P245A	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	76	0	0	47	15	24.19	-	-	-	G	153435429	C	G	153435429	3	3	868	1	0	0	0	0	1	0	0	0	5998	855	30	2	763	2	FMNL2	2	153435429	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	53428355	153435429	89763944	6	71294										
XIRP2	0	genome.wustl.edu	37	chr2	168101752	168101752	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ttatttttgagactttttctTtagatgagattaaagaagaa	7	2	1	5			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	168101752	168101752	T	A	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.3850	p.L1284I	0.998	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	69	0	0	45	13	22.41	-	-	-	A	168101752	T	A	168101752	3	1	868	1	0	0	0	0	1	0	0	0	17527	1838	64	5	3880	5	XIRP2	2	168101752	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	14666323	168101752	75097621	7	71295										
ANKRD44	0	genome.wustl.edu	37	chr2	197865158	197865158	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cttacctgcctttgtcatctCtacaactgacgatactggaa	6	12	2	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	197865158	197865158	C	G	SNP	ANKRD44	ENST00000328737	human	ensembl	69_37n	-1	known	missense	c.2429	p.R810T	0.486	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413	104	0	0	69	20	22.47	-	-	-	G	197865158	C	G	197865158	3	3	868	1	0	0	0	0	1	0	0	0	671	913	32	2	346	2	ANKRD44	2	197865158	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	29763406	197865158	45334215	8	71296										
DNAH12	0	genome.wustl.edu	37	chr3	57394164	57394164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgttgaaatgtcgaatacaaCggggagtaactggatttctt	11	5	1	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	57394164	57394164	C	T	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.6062	p.R2021H	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	44	0	0	41	5	10.87	-	-	-	T	57394164	C	T	57394164	3	4	868	1	0	0	0	0	1	0	0	0	4636	536	19	1	3296	1	DNAH12	3	57394164	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09		57394164	140628266	9	71297										
PXK	0	genome.wustl.edu	37	chr3	58368396	58368396	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gagctggttaagaagtttttAgatccaaacaactattccgc	8	8	0	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	58368396	58368396	A	C	SNP	PXK	ENST00000356151	human	ensembl	69_37n	1	known	missense	c.357	p.L119F	0.999	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox,pfscan_Prot_kinase_cat_dom	pfam_Phox,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PXK	HGNC	ENSG00000168297	61	0	0	44	12	21.43	-	-	-	C	58368396	A	C	58368396	3	2	868	1	0	0	0	0	1	0	0	0	12932	417	15	5	371	5	PXK	3	58368396	Missense_Mutation	SNP	A	TCGA-E9-A243-01A-21D-A167-09	974232	58368396	139654034	10	71298										
ATR	0	genome.wustl.edu	37	chr3	142274964	142274964	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ctttcttgacaatgtcagaaTcatctttgactttatctctg	5	9	5	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	142274964	142274964	T	A	SNP	ATR	ENST00000350721	human	ensembl	69_37n	-1	known	missense	c.2096	p.D699V	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	67	0	0	54	12	18.18	-	-	-	A	142274964	T	A	142274964	3	1	868	1	0	0	0	0	1	0	0	0	1208	1435	50	5	5990	5	ATR	3	142274964	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	83906568	142274964	55747466	11	71299										
OTOL1	0	genome.wustl.edu	37	chr3	161221388	161221388	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	atccccatcaaatttgaaaaGattctctataatgaccaagg	5	9	2	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	161221388	161221388	G	T	SNP	OTOL1	ENST00000327928	human	ensembl	69_37n	1	known	missense	c.1092	p.K364N	0.976	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	OTOL1	HGNC	ENSG00000182447	57	0	0	54	9	14.06	-	-	-	T	161221388	G	T	161221388	3	4	868	1	0	0	0	0	1	0	0	0	11377	933	33	2	1106	2	OTOL1	3	161221388	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	18946424	161221388	36801042	12	71300										
SMAD1	0	genome.wustl.edu	37	chr4	146467997	146467997	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	actgatccttccaacaataaGaaccgtttctgccttgggct	7	12	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	4	146467997	146467997	G	C	SNP	SMAD1	ENST00000302085	human	ensembl	69_37n	1	known	missense	c.918	p.K306N	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365	69	0	0	64	11	14.67	-	-	-	C	146467997	G	C	146467997	3	2	868	1	0	0	0	0	1	0	0	0	14846	933	33	2	932	2	SMAD1	4	146467997	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		146467997	44686279	13	71301										
KIAA0947	0	genome.wustl.edu	37	chr5	5464537	5464537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgcctctcctccagatccttCtccatctccatctgcagctt	4	18	4	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	5	5464537	5464537	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	missense	c.5090	p.S1697F	0.053	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	39	0	0	33	4	10.81	-	-	-	T	5464537	C	T	5464537	3	4	868	1	0	0	0	0	1	0	0	0	8254	913	32	2	5140	2	KIAA0947	5	5464537	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09		5464537	175450723	14	71302										
MCC	0	genome.wustl.edu	37	chr5	112824046	112824048	+	In_Frame_Del	DEL	GCT	GCT	-													0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ctgctgctgctgctgctgccGctgccgccgccgccgccgcc							TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	5	112824046	112824048	GCT	-	DEL	MCC	ENST00000408903	human	ensembl	69_37n	-1	putative	in_frame_del	c.66_64	p.S22in_frame_del	0.733:0.827:0.854	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MCC	HGNC	ENSG00000171444	14	0	0	4	2	33.33	-	-	-	-	112824048	GCT	-	112824046	7	5	868	1	0	1	0	1	0	0	0	0	9444	1078	38	0	3130	0	MCC	5	112824046	In_Frame_Del	DEL	GCT	TCGA-E9-A243-01A-21D-A167-09	107359509	112824046	68091214	15	71303										
FSTL4	0	genome.wustl.edu	37	chr5	132652191	132652191	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgaggtggccattgccatctGcatctaagtccctgaacaga	10	11	2	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	5	132652191	132652191	G	C	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.563	p.A188G	0.000	pfscan_EF_HAND_2	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	40	0	0	40	15	27.27	-	-	-	C	132652191	G	C	132652191	3	2	868	1	0	0	0	0	1	0	0	0	6128	1319	46	4	2013	4	FSTL4	5	132652191	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	19828145	132652191	48263069	16	71304										
BACH2	0	genome.wustl.edu	37	chr6	90660867	90660867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ggccccagctggggccgtggGggtaggggcagggctgggct	23	10	0	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	6	90660867	90660867	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.958	p.P320S	0.273	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	15	0	0	9	4	30.77	-	-	-	A	90660867	G	A	90660867	3	1	868	1	0	0	0	0	1	0	0	0	1288	1232	43	4	1579	4	BACH2	6	90660867	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		90660867	80454200	17	71305										
PTPRK	0	genome.wustl.edu	37	chr6	128404925	128404925	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gttcaagaagatcttattttCaaaggatgttccttgaagag	9	5	3	4			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	6	128404925	128404925	C	A	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	nonsense	c.1510	p.E504*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	100	0	0	81	9	10	-	-	-	A	128404925	C	A	128404925	4	1	868	1	0	0	0	0	0	1	0	0	12888	835	29	2	2922	2	PTPRK	6	128404925	Nonsense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	37744058	128404925	42710142	18	71306										
POM121C	0	genome.wustl.edu	37	chr7	75050891	75050891	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gttctgacctaagccccctgTgaagggggtggaggtggctg	17	9	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	75050891	75050891	T	C	SNP	POM121C	ENST00000257665	human	ensembl	69_37n	-1	known	missense	c.3370	p.T1124A	0.001	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	34	0	0	26	4	13.33	-	-	-	C	75050891	T	C	75050891	3	2	868	1	0	0	0	0	1	0	0	0	12314	1696	59	5	331	5	POM121C	7	75050891	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09		75050891	84087772	19	71307										
TAF6	0	genome.wustl.edu	37	chr7	99711749	99711749	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gtctcctcctgaatctgggcGatgcccatggattcagccac	10	14	3	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	99711749	99711749	G	A	SNP	TAF6	ENST00000344095	human	ensembl	69_37n	-1	known	silent	c.84	p.I28	0.965	pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_TAF_TATA-bd	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290	87	0	0	51	10	16.39	-	-	-	A	99711749	G	A	99711749	2	1	868	1	0	0	0	0	0	0	0	1	15622	1048	37	1		1	TAF6	7	99711749	Silent	SNP	G	TCGA-E9-A243-01A-21D-A167-09	24660858	99711749	59426914	20	71308										
EPHA1	0	genome.wustl.edu	37	chr7	143091403	143091403	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gatccgatgggcaatggcttCaggggctgtccaacggatag	15	9	1	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	143091403	143091403	C	G	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.2386	p.E796Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	78	0	0	56	14	20	-	-	-	G	143091403	C	G	143091403	3	3	868	1	0	0	0	0	1	0	0	0	5202	835	29	2	560	2	EPHA1	7	143091403	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	43379654	143091403	16047260	21	71309										
BAG4	0	genome.wustl.edu	37	chr8	38067546	38067546	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gattcttcatacccctatagCcaatcagatcaaagcatgaa	5	11	4	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	8	38067546	38067546	C	T	SNP	BAG4	ENST00000287322	human	ensembl	69_37n	1	known	silent	c.909	p.S303	0.377	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735	35	0	0	24	10	29.41	-	-	-	T	38067546	C	T	38067546	2	4	868	1	0	0	0	0	0	0	0	1	1293	738	26	4		4	BAG4	8	38067546	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09		38067546	108296476	22	71310										
ZFAND1	0	genome.wustl.edu	37	chr8	82626198	82626198	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gcatgcatctttaatttcatCaatgcaacctttgcagctgt	6	10	3	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	8	82626198	82626198	C	T	SNP	ZFAND1	ENST00000220669	human	ensembl	69_37n	-1	known	silent	c.435	p.L145	0.993	NULL	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	-	no_errors	ZFAND1	HGNC	ENSG00000104231	303	0	0	233	32	12.08	-	-	-	T	82626198	C	T	82626198	2	4	868	1	0	0	0	0	0	0	0	1	17722	825	29	2		2	ZFAND1	8	82626198	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09	44558652	82626198	63737824	23	71311										
TPM2	0	genome.wustl.edu	37	chr9	35689719	35689719	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	acctgcttgcagcggtcctcAgcttgcttcttgtcggcttc	10	14	2	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	35689719	35689719	A	G	SNP	TPM2	ENST00000378300	human	ensembl	69_37n	-1	known	silent	c.96	p.A32	0.910	NULL	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467	100	0	0	67	16	19.28	-	-	-	G	35689719	A	G	35689719	2	3	868	1	0	0	0	0	0	0	0	1	16502	175	7	5		5	TPM2	9	35689719	Silent	SNP	A	TCGA-E9-A243-01A-21D-A167-09		35689719	105523712	24	71312										
TBC1D2	0	genome.wustl.edu	37	chr9	101006381	101006381	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ggggtgttttcacagggcacAggaactcctccagctctgcc	12	13	2	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	101006381	101006381	A	T	SNP	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	missense	c.542	p.L181Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	38	0	0	17	10	37.04	-	-	-	T	101006381	A	T	101006381	3	4	868	1	0	0	0	0	1	0	0	0	15700	188	7	5	2255	5	TBC1D2	9	101006381	Missense_Mutation	SNP	A	TCGA-E9-A243-01A-21D-A167-09	65316662	101006381	40207050	25	71313										
RNF20	0	genome.wustl.edu	37	chr9	104315014	104315014	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	aaaggaagcagaaattatcaAacaattgaagattgaactca	7	5	2	4			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	104315014	104315014	A	G	SNP	RNF20	ENST00000389120	human	ensembl	69_37n	1	known	missense	c.1880	p.K627R	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	40	0	0	27	14	34.15	-	-	-	G	104315014	A	G	104315014	3	3	868	1	0	0	0	0	1	0	0	0	13559	14	1	5	1926	5	RNF20	9	104315014	Missense_Mutation	SNP	A	TCGA-E9-A243-01A-21D-A167-09	3308633	104315014	36898417	26	71314										
CTNNAL1	0	genome.wustl.edu	37	chr9	111775599	111775599	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tacctgagaaaccagcgggaGtagcgtctgctccaccgagc	12	13	1	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	111775599	111775599	G	C	SNP	CTNNAL1	ENST00000325551	human	ensembl	69_37n	-1	known	missense	c.124	p.L42V	0.567	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	14	0	0	16	5	23.81	-	-	-	C	111775599	G	C	111775599	3	2	868	1	0	0	0	0	1	0	0	0	4047	1029	36	4	2156	4	CTNNAL1	9	111775599	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	7460585	111775599	29437832	27	71315										
TBC1D13	0	genome.wustl.edu	37	chr9	131568232	131568232	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gcctgacgtcatccgcatctGggactccctcttcgccgatg	10	16	3	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	131568232	131568232	G	C	SNP	TBC1D13	ENST00000372648	human	ensembl	69_37n	1	known	missense	c.1013	p.W338S	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021	46	0	0	39	11	22	-	-	-	C	131568232	G	C	131568232	3	2	868	1	0	0	0	0	1	0	0	0	15694	1357	47	4	1051	4	TBC1D13	9	131568232	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	19792633	131568232	9645199	28	71316										
OPTN	0	genome.wustl.edu	37	chr10	13174129	13174129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	agagagaaaattcatgaggaAaaggagcaactggcattgca	12	5	1	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	10	13174129	13174129	A	G	SNP	OPTN	ENST00000263036	human	ensembl	69_37n	1	known	silent	c.1464	p.E488	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	106	0	0	110	18	14.06	-	-	-	G	13174129	A	G	13174129	2	3	868	1	0	0	0	0	0	0	0	1	10962	11	1	5		5	OPTN	10	13174129	Silent	SNP	A	TCGA-E9-A243-01A-21D-A167-09		13174129	122360618	29	71317										
TRAF6	0	genome.wustl.edu	37	chr11	36518707	36518707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cacagttgtcacaagaaaccTgtctccttggacaatccttc	6	13	2	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	11	36518707	36518707	T	C	SNP	TRAF6	ENST00000348124	human	ensembl	69_37n	-1	known	missense	c.557	p.Q186R	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104	77	0	0	61	31	33.7	-	-	-	C	36518707	T	C	36518707	3	2	868	1	0	0	0	0	1	0	0	0	16541	1580	55	5	1027	5	TRAF6	11	36518707	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09		36518707	98487809	30	71318										
PICALM	0	genome.wustl.edu	37	chr11	85722144	85722144	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cttatagatgtcaagaccttCtttgcattggttctttttca	6	8	4	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	11	85722144	85722144	C	A	SNP	PICALM	ENST00000393346	human	ensembl	69_37n	-1	known	nonsense	c.694	p.E232*	1.000	pfam_ANTH	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	PICALM	HGNC	ENSG00000073921	151	0	0	99	13	11.61	-	-	-	A	85722144	C	A	85722144	4	1	868	1	0	0	0	0	0	1	0	0	11954	922	32	2	1348	2	PICALM	11	85722144	Nonsense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	49203437	85722144	49284372	31	71319										
PLEKHA5	0	genome.wustl.edu	37	chr12	19460407	19460408	+	RNA	INS	-	-	A													0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gagcacaaaactcttggctcINSaaaaaaaaatagaggaagct							TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	19460407	19460408	-	A	INS	PLEKHA5	ENST00000510738	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.923:0.931	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126	19	0	0	9	3	25	-	-	-	A	19460408	-	A	19460407	6	5	868	0	1	1	1	0	0	0	0	0	12133	841	29	0		0	PLEKHA5	12	19460407	RNA	INS	-	TCGA-E9-A243-01A-21D-A167-09		19460407	114391488	32	71320										
EEA1	0	genome.wustl.edu	37	chr12	93221730	93221732	+	In_Frame_Del	DEL	TTG	TTG	-													0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ttgagttgtaaatcagccacTtgttgttctttatccatcaa							TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	93221730	93221732	TTG	-	DEL	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	in_frame_del	c.1362_1360	p.Q454in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	113	0	0	98	12	10.71	-	-	-	-	93221732	TTG	-	93221730	7	5	868	1	0	1	0	1	0	0	0	0	4956	1606	56	0	2945	0	EEA1	12	93221730	In_Frame_Del	DEL	TTG	TCGA-E9-A243-01A-21D-A167-09	73761323	93221730	40630165	33	71321										
BTBD11	0	genome.wustl.edu	37	chr12	108012010	108012010	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tccctggaggagattctggcCgaggggactgacctggcgga	17	10	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	108012010	108012010	C	A	SNP	BTBD11	ENST00000280758	human	ensembl	69_37n	1	known	silent	c.2307	p.A769	0.892	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	24	0	0	20	8	28.57	-	-	-	A	108012010	C	A	108012010	2	1	868	1	0	0	0	0	0	0	0	1	1547	639	23	3		3	BTBD11	12	108012010	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09	14790280	108012010	25839885	34	71322										
NOS1	0	genome.wustl.edu	37	chr12	117696222	117696222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ttcctttcttcctgcacagaGttggggtgcctcatttccat	8	12	2	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	117696222	117696222	G	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.2511	p.N837K	1.000	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	87	0	0	65	12	15.58	-	-	-	T	117696222	G	T	117696222	3	4	868	1	0	0	0	0	1	0	0	0	10613	1020	36	4	1849	4	NOS1	12	117696222	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	9684212	117696222	16155673	35	71323										
KSR2	0	genome.wustl.edu	37	chr12	117977596	117977596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gggagaaggcggcgtggcacTaggagggagggggggtgctg	25	5	0	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	117977596	117977596	T	C	SNP	KSR2	ENST00000339824	human	ensembl	69_37n	-1	known	missense	c.1615	p.S539G	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	202	0	0	114	41	26.45	-	-	-	C	117977596	T	C	117977596	3	2	868	1	0	0	0	0	1	0	0	0	8636	1522	53	5	1281	5	KSR2	12	117977596	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	281374	117977596	15874299	36	71324										
PRTG	0	genome.wustl.edu	37	chr15	55912380	55912380	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gaagctggttgtctgacctgGggagctaggggagtcttcat	16	7	3	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	55912380	55912380	G	T	SNP	PRTG	ENST00000389286	human	ensembl	69_37n	-1	known	missense	c.3283	p.P1095T	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	PRTG	HGNC	ENSG00000166450	79	0	0	50	11	18.03	-	-	-	T	55912380	G	T	55912380	3	4	868	1	0	0	0	0	1	0	0	0	12718	1232	43	4	173	4	PRTG	15	55912380	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		55912380	46619012	37	71325										
RNF111	0	genome.wustl.edu	37	chr15	59323149	59323149	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ccttttgcatccagagcccaTtggggcagccaaaagttttc	9	12	0	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	59323149	59323149	T	A	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.128	p.I43N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	69	0	0	47	12	20.34	-	-	-	A	59323149	T	A	59323149	3	1	868	1	0	0	0	0	1	0	0	0	13511	1493	52	5	130	5	RNF111	15	59323149	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	3410769	59323149	43208243	38	71326										
PARP6	0	genome.wustl.edu	37	chr15	72546845	72546845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tatccagagctttctgaagcCgctcataattcttcttctgt	6	11	5	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	72546845	72546845	C	G	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.1142	p.R381P	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	95	0	0	63	20	24.1	-	-	-	G	72546845	C	G	72546845	3	3	868	1	0	0	0	0	1	0	0	0	11537	652	23	3	790	3	PARP6	15	72546845	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	13223696	72546845	29984547	39	71327										
C16orf53	0	genome.wustl.edu	37	chr16	29828128	29828128	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgcgtgccctgcagcgacgaGgaggtggagctgcctgcgga	18	11	0	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	16	29828128	29828128	G	C	SNP	C16orf53	ENST00000320330	human	ensembl	69_37n	1	known	missense	c.282	p.E94D	1.000	NULL	NULL	-	no_errors	C16orf53	HGNC	ENSG00000185928	8	0	0	6	4	40	-	-	-	C	29828128	G	C	29828128	3	2	868	1	0	0	0	0	1	0	0	0	1831	991	35	4	284	4	C16orf53	16	29828128	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		29828128	60526625	40	71328										
TAT	0	genome.wustl.edu	37	chr16	71610261	71610261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cccaccaacgttgacatgcaCgtccagaattgaggggaggt	12	11	0	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	16	71610261	71610261	C	T	SNP	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	missense	c.58	p.V20M	0.373	pfam_Tyr_aminoTrfase_ubiquitination,pirsf_Tyrosine_transaminase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	139	0	0	85	18	17.48	-	-	-	T	71610261	C	T	71610261	3	4	868	1	0	0	0	0	1	0	0	0	15682	536	19	1	1350	1	TAT	16	71610261	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	41782133	71610261	18744492	41	71329										
TP53	0	genome.wustl.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	7578190	7578190	T	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220S	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	162	1	0.61	91	13	12.5	-	-	-	G	7578190	T	G	7578190	3	3	868	1	0	0	0	0	1	0	0	0	16477	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09		7578190	73617020	42	71330										
TP53	0	genome.wustl.edu	37	chr17	7579414	7579414	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gggacagaagatgacaggggCcaggagggggctggtgcagg	22	6	0	3			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	7579414	7579414	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.273	p.W91*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	35	0	0	26	10	27.78	-	-	-	T	7579414	C	T	7579414	4	4	868	1	0	0	0	0	0	1	0	0	16477	740	26	4	1029	4	TP53	17	7579414	Nonsense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	1224	7579414	73615796	43	71331										
TRPV2	0	genome.wustl.edu	37	chr17	16326827	16326827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cttgcaccaagcagtgggatGtggtaagctacctcctggag	13	10	0	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	16326827	16326827	G	A	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	missense	c.670	p.V224M	0.978	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	38	0	0	18	4	18.18	-	-	-	A	16326827	G	A	16326827	3	1	868	1	0	0	0	0	1	0	0	0	16692	1377	48	4	684	4	TRPV2	17	16326827	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	8747413	16326827	64868383	44	71332										
GH1	0	genome.wustl.edu	37	chr17	61994783	61994783	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ccgtagttcttgagtagtgcGtcatcgttgtgtgagtttgt	13	6	2	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	61994783	61994783	G	A	SNP	GH1	ENST00000323322	human	ensembl	69_37n	-1	known	silent	c.540	p.D180	0.648	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH1	HGNC	ENSG00000259384	286	0	0	167	90	35.02	-	-	-	A	61994783	G	A	61994783	2	1	868	1	0	0	0	0	0	0	0	1	6419	1136	40	1		1	GH1	17	61994783	Silent	SNP	G	TCGA-E9-A243-01A-21D-A167-09	45667956	61994783	19200427	45	71333										
FLRT3	0	genome.wustl.edu	37	chr20	14307453	14307453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgcagcagtcagggaattccGcaccagggacagctctgtca	12	12	3	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	14307453	14307453	G	A	SNP	FLRT3	ENST00000341420	human	ensembl	69_37n	-1	known	missense	c.700	p.R234W	0.948	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	14	0	0	10	8	44.44	-	-	-	A	14307453	G	A	14307453	3	1	868	1	0	0	0	0	1	0	0	0	5986	1086	38	1	1253	1	FLRT3	20	14307453	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		14307453	48718067	46	71334										
CPNE1	0	genome.wustl.edu	37	chr20	34218833	34218833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	aggtactcacgagtcatagtCctgaaccacgctgcccacac	8	15	2	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	34218833	34218833	C	T	SNP	CPNE1	ENST00000317677	human	ensembl	69_37n	-1	known	missense	c.1000	p.D334N	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE1	HGNC	ENSG00000214078	86	0	0	80	9	10.11	-	-	-	T	34218833	C	T	34218833	3	4	868	1	0	0	0	0	1	0	0	0	3841	855	30	2	652	2	CPNE1	20	34218833	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	19911380	34218833	28806687	47	71335										
ACTR5	0	genome.wustl.edu	37	chr20	37380924	37380924	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ctgcatgagcacagctacatCgctgaggattatgtggaagg	13	8	0	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	37380924	37380924	C	A	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	1	known	silent	c.756	p.I252	0.010	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	62	0	0	50	7	12.28	-	-	-	A	37380924	C	A	37380924	2	1	868	1	0	0	0	0	0	0	0	1	215	874	31	3		3	ACTR5	20	37380924	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09	3162091	37380924	25644596	48	71336										
NDUFV3	0	genome.wustl.edu	37	chr21	44323603	44323603	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	catcctcttccagctcctctGattctgaatctgatgatgag	7	12	4	5			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	21	44323603	44323603	G	A	SNP	NDUFV3	ENST00000354250	human	ensembl	69_37n	1	known	missense	c.481	p.D161N	0.802	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194	37	0	0	24	6	20	-	-	-	A	44323603	G	A	44323603	3	1	868	1	0	0	0	0	1	0	0	0	10373	1290	45	2	491	2	NDUFV3	21	44323603	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09		44323603	3806292	49	71337										
RPGR	0	genome.wustl.edu	37	chrX	38145826	38145826	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	cctctacttcccctccctccTctttttcctcccctctcccc	0	25	3	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	38145826	38145826	T	C	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.2426	p.E809G	0.349	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	225	1	0.44	288	39	11.93	-	-	-	C	38145826	T	C	38145826	3	2	868	1	0	0	0	0	1	0	0	0	13634	1551	54	5	1595	5	RPGR	23	38145826	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09		38145826	117124734	50	71338										
PQBP1	0	genome.wustl.edu	37	chrX	48759291	48759291	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	aactccgtggttaccaaatcGgccaagaagctcagaagcag	10	11	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	48759291	48759291	G	C	SNP	PQBP1	ENST00000456306	human	ensembl	69_37n	1	known	missense	c.230	p.R77P	0.999	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PQBP1	HGNC	ENSG00000102103	66	0	0	59	14	18.92	-	-	-	C	48759291	G	C	48759291	3	2	868	1	0	0	0	0	1	0	0	0	12494	1103	39	3	274	3	PQBP1	23	48759291	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	10613465	48759291	106511269	51	71339										
WNK3	0	genome.wustl.edu	37	chrX	54259337	54259337	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gtcgacgtggtgatgcaggtGgcaaaggaatctcagtagat	15	6	1	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	54259337	54259337	G	C	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	missense	c.4745	p.P1582R	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	145	0	0	132	23	14.84	-	-	-	C	54259337	G	C	54259337	3	2	868	1	0	0	0	0	1	0	0	0	17476	1348	47	4	673	4	WNK3	23	54259337	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	5500046	54259337	101011223	52	71340										
GPRASP1	0	genome.wustl.edu	37	chrX	101910990	101910990	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	ccagaaaatacacaaagccaGaggccattatagggtcctgg	10	10	0	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	101910990	101910990	G	A	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	missense	c.2149	p.E717K	0.035	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	61	0	0	52	6	10.34	-	-	-	A	101910990	G	A	101910990	3	1	868	1	0	0	0	0	1	0	0	0	6773	943	33	2	2151	2	GPRASP1	23	101910990	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	47651653	101910990	53359570	53	71341										
PLP1	0	genome.wustl.edu	37	chrX	103044308	103044308	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tgctgcatttgtgggggctgCagctacactggtttccctgg	14	10	0	0			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	103044308	103044308	C	A	SNP	PLP1	ENST00000303958	human	ensembl	69_37n	1	known	missense	c.743	p.A248E	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	PLP1	HGNC	ENSG00000123560	270	0	0	189	24	11.27	-	-	-	A	103044308	C	A	103044308	3	1	868	1	0	0	0	0	1	0	0	0	12178	710	25	4	765	4	PLP1	23	103044308	Missense_Mutation	SNP	C	TCGA-E9-A243-01A-21D-A167-09	1133318	103044308	52226252	54	71342										
DOCK11	0	genome.wustl.edu	37	chrX	117743298	117743298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	tggccacatacttgttggaaGagaataagattaaggtaagt	11	4	0	2			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	117743298	117743298	G	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.2935	p.E979Q	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	46	0	0	42	5	10.64	-	-	-	C	117743298	G	C	117743298	3	2	868	1	0	0	0	0	1	0	0	0	4721	943	33	2	3041	2	DOCK11	23	117743298	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	14698990	117743298	37527262	55	71343										
DOCK11	0	genome.wustl.edu	37	chrX	117788579	117788579	+	Silent	SNP	C	C	A													0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	aattaggcaactgcctttccCgcagaagtcaaagacttgac							TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	117788579	117788579	C	A	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	silent	c.4710	p.P1570	0.566	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	47	0	0	28	9	24.32	-	-	-	A	117788579	C	A	117788579	2	1	868	1	0	0	0	0	0	0	0	1	4721	639	23	3		3	DOCK11	23	117788579	Silent	SNP	C	TCGA-E9-A243-01A-21D-A167-09	45281	117788579	37481981	56	71344	505	2								
DOCK11	0	genome.wustl.edu	37	chrX	117788580	117788580	+	Missense_Mutation	SNP	G	G	T													0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	attaggcaactgcctttcccGcagaagtcaaagacttgacc							TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	117788580	117788580	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.4711	p.A1571S	0.580	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	47	0	0	28	9	24.32	-	-	-	T	117788580	G	T	117788580	3	4	868	1	0	0	0	0	1	0	0	0	4721	1087	38	3	4881	3	DOCK11	23	117788580	Missense_Mutation	SNP	G	TCGA-E9-A243-01A-21D-A167-09	1	117788580	37481980	57	71345	505	2								
CUL4B	0	genome.wustl.edu	37	chrX	119673224	119673224	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.157894736842105	9	0.10211048262533	2.03914807302231	2.02171945701357	2.05330882352941	1	1	0	gaagttttgaatctacatacTtagctaaaatgggggaaaag	10	4	1	1			TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	119673224	119673224	T	A	SNP	CUL4B	ENST00000404115	human	ensembl	69_37n	-1	known	missense	c.1694	p.K565M	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	181	0	0	121	18	12.95	-	-	-	A	119673224	T	A	119673224	3	1	868	1	0	0	0	0	1	0	0	0	4089	1609	56	5	1083	5	CUL4B	23	119673224	Missense_Mutation	SNP	T	TCGA-E9-A243-01A-21D-A167-09	1884644	119673224	35597336	58	71346										
CSMD2	0	genome.wustl.edu	37	chr1	34498201	34498201	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	agggaggcacttaccttcatAggtggcgtggaagccttggg	16	8	1	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	34498201	34498201	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.511	p.Y171H	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	31	0	0	44	10	18.52	-	-	-	G	34498201	A	G	34498201	3	3	869	1	0	0	0	0	1	0	0	0	3977	420	15	5	10340	5	CSMD2	1	34498201	Missense_Mutation	SNP	A	TCGA-E9-A244-01A-11D-A167-09		34498201	214752420	1	71347										
COL9A2	0	genome.wustl.edu	37	chr1	40776400	40776400	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ccttaccggtggtccagggaTgccttgctctccagaggcac	12	14	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	40776400	40776400	T	A	SNP	COL9A2	ENST00000372748	human	ensembl	69_37n	-1	known	missense	c.670	p.I224F	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A2	HGNC	ENSG00000049089	33	0	0	62	10	13.89	-	-	-	A	40776400	T	A	40776400	3	1	869	1	0	0	0	0	1	0	0	0	3738	1464	51	5	1479	5	COL9A2	1	40776400	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09	6278199	40776400	208474221	2	71348										
DENND2C	0	genome.wustl.edu	37	chr1	115168068	115168068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tccgtatgaactatccagaaCtctgaagttcagttcttttt	6	9	3	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	115168068	115168068	C	T	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	missense	c.538	p.V180I	0.949	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	43	0	0	28	5	15.15	-	-	-	T	115168068	C	T	115168068	3	4	869	1	0	0	0	0	1	0	0	0	4466	565	20	4	2145	4	DENND2C	1	115168068	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	74391668	115168068	134082553	3	71349										
NOTCH2	0	genome.wustl.edu	37	chr1	120458436	120458436	+	Frame_Shift_Del	DEL	G	G	-													0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	atgagctggaaagtcacaatGgggggcaagggctcccgagg							TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	120458436	120458436	G	-	DEL	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_del	c.6909	p.I2304fs	0.957	pirsf_Notch,prints_Notch_2	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	24	0	0	15	16	48.48	-	-	-	-	120458436	G	-	120458436	7	5	869	1	0	1	0	1	0	0	0	0	10620	1335	47	0	510	0	NOTCH2	1	120458436	Frame_Shift_Del	DEL	G	TCGA-E9-A244-01A-11D-A167-09	5290368	120458436	128792185	4	71350										
TCHH	0	genome.wustl.edu	37	chr1	152081930	152081930	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tctgtcgcgcagctgggaatCttccaactgccggaactgtt	11	12	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	152081930	152081930	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3763	p.D1255N	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	42	0	0	121	22	15.38	-	-	-	T	152081930	C	T	152081930	3	4	869	1	0	0	0	0	1	0	0	0	15795	913	32	2	2072	2	TCHH	1	152081930	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	31623494	152081930	97168691	5	71351										
LCE3A	0	genome.wustl.edu	37	chr1	152595499	152595499	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggggcacagctggaggaagcTggaggcagacactgtgctgg	19	8	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	152595499	152595499	T	G	SNP	LCE3A	ENST00000335674	human	ensembl	69_37n	-1	known	silent	c.81	p.P27	0.002	NULL	NULL	-	no_errors	LCE3A	HGNC	ENSG00000185962	41	0	0	134	19	12.42	-	-	-	G	152595499	T	G	152595499	2	3	869	1	0	0	0	0	0	0	0	1	8723	1567	55	5		5	LCE3A	1	152595499	Silent	SNP	T	TCGA-E9-A244-01A-11D-A167-09	513569	152595499	96655122	6	71352										
IQGAP3	0	genome.wustl.edu	37	chr1	156532441	156532441	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggtagtggtcatagatgtccTggctttctctgtcatcctgc	11	10	3	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	156532441	156532441	T	A	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.815	p.Q272L	0.986	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	78	0	0	240	40	14.29	-	-	-	A	156532441	T	A	156532441	3	1	869	1	0	0	0	0	1	0	0	0	7870	1580	55	5	4200	5	IQGAP3	1	156532441	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09	3936942	156532441	92718180	7	71353										
FCER1A	0	genome.wustl.edu	37	chr1	159273897	159273897	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	atattgtgaatgccaaatttGaagacagtggagaatacaaa	9	4	0	4			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	159273897	159273897	G	A	SNP	FCER1A	ENST00000368115	human	ensembl	69_37n	1	known	missense	c.256	p.E86K	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCER1A	HGNC	ENSG00000179639	31	0	0	29	9	23.68	-	-	-	A	159273897	G	A	159273897	3	1	869	1	0	0	0	0	1	0	0	0	5820	1291	45	2	266	2	FCER1A	1	159273897	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	2741456	159273897	89976724	8	71354										
KCNJ10	0	genome.wustl.edu	37	chr1	160011189	160011189	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gtgggaacaggtcatcagacAttgctgatgcgcacactaag	12	9	2	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	160011189	160011189	A	G	SNP	KCNJ10	ENST00000368089	human	ensembl	69_37n	-1	known	silent	c.1134	p.N378	0.414	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807	36	0	0	55	10	15.38	-	-	-	G	160011189	A	G	160011189	2	3	869	1	0	0	0	0	0	0	0	1	8098	214	8	5		5	KCNJ10	1	160011189	Silent	SNP	A	TCGA-E9-A244-01A-11D-A167-09	737292	160011189	89239432	9	71355										
ATP1A4	0	genome.wustl.edu	37	chr1	160145985	160145985	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttcatcatcctcggtataccCctgcctctgggaaccataac	6	15	3	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	160145985	160145985	C	A	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	1	known	silent	c.2415	p.P805	0.997	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	67	0	0	91	24	20.87	-	-	-	A	160145985	C	A	160145985	2	1	869	1	0	0	0	0	0	0	0	1	1135	610	22	4		4	ATP1A4	1	160145985	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09	134796	160145985	89104636	10	71356										
ADCY10	0	genome.wustl.edu	37	chr1	167778922	167778922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tttctttgacatgttagaaaTgattgtccacggtattagct	8	6	1	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	167778922	167778922	T	G	SNP	ADCY10	ENST00000367851	human	ensembl	69_37n	-1	known	missense	c.4826	p.H1609P	0.897	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	54	0	0	104	35	25.18	-	-	-	G	167778922	T	G	167778922	3	3	869	1	0	0	0	0	1	0	0	0	293	1464	51	5	10	5	ADCY10	1	167778922	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09	7632937	167778922	81471699	11	71357										
PAPPA2	0	genome.wustl.edu	37	chr1	176564589	176564589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gtgactgccgcctgcagggcCgctgctactcctggaaccgc	13	16	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	176564589	176564589	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	69_37n	1	known	missense	c.1849	p.R617C	1.000	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	34	0	0	54	7	11.48	-	-	-	T	176564589	C	T	176564589	3	4	869	1	0	0	0	0	1	0	0	0	11506	652	23	1	1855	1	PAPPA2	1	176564589	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	8785667	176564589	72686032	12	71358										
FAM5C	0	genome.wustl.edu	37	chr1	190067723	190067723	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctcagagtggctgcctccgaAgggattgacataaacagcca	11	11	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	190067723	190067723	A	C	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	missense	c.1726	p.F576V	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	32	0	0	54	15	21.74	-	-	-	C	190067723	A	C	190067723	3	2	869	1	0	0	0	0	1	0	0	0	5639	72	3	5	578	5	FAM5C	1	190067723	Missense_Mutation	SNP	A	TCGA-E9-A244-01A-11D-A167-09	13503134	190067723	59182898	13	71359										
PPP1R15B	0	genome.wustl.edu	37	chr1	204379798	204379798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggttagtgtctggaagccgaCtacctcgctatttccatcac	9	12	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	204379798	204379798	C	G	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	missense	c.742	p.V248L	0.006	pfam_Prot_Pase1_reg-su15B_N	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	31	0	0	60	7	10.45	-	-	-	G	204379798	C	G	204379798	3	3	869	1	0	0	0	0	1	0	0	0	12441	565	20	4	1407	4	PPP1R15B	1	204379798	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	14312075	204379798	44870823	14	71360										
C2orf71	0	genome.wustl.edu	37	chr2	29295725	29295725	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gcctggaggttttggaaaggTgtggttccacagagacccca	14	9	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	29295725	29295725	T	C	SNP	C2orf71	ENST00000331664	human	ensembl	69_37n	-1	novel	missense	c.1403	p.H468R	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	31	0	0	45	12	21.05	-	-	-	C	29295725	T	C	29295725	3	2	869	1	0	0	0	0	1	0	0	0	2211	1696	59	5	2471	5	C2orf71	2	29295725	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09		29295725	213903648	15	71361										
RTN4	0	genome.wustl.edu	37	chr2	55252437	55252437	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tagaaaagtcatctgagaaaCtgattttctcttcaactttg	6	7	4	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	55252437	55252437	C	G	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.2798	p.S933T	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	50	0	0	52	15	22.39	-	-	-	G	55252437	C	G	55252437	3	3	869	1	0	0	0	0	1	0	0	0	13814	565	20	4	846	4	RTN4	2	55252437	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	25956712	55252437	187946936	16	71362										
MRPS5	0	genome.wustl.edu	37	chr2	95775737	95775737	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttgcctcttcctttttttgcTccagcaccagtctctgctaa	5	14	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	95775737	95775737	T	C	SNP	MRPS5	ENST00000272418	human	ensembl	69_37n	-1	known	silent	c.327	p.G109	0.998	NULL	pfam_Ribosomal_S5_C,pfam_Ribosomal_S5_N,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N	-	no_errors	MRPS5	HGNC	ENSG00000144029	52	0	0	64	39	37.86	-	-	-	C	95775737	T	C	95775737	2	2	869	1	0	0	0	0	0	0	0	1	9918	1538	54	5		5	MRPS5	2	95775737	Silent	SNP	T	TCGA-E9-A244-01A-11D-A167-09	40523300	95775737	147423636	17	71363										
STAM2	0	genome.wustl.edu	37	chr2	153000517	153000517	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tgtttctgttcttgcagcgaTaattcaatagctagtttcaa	7	7	4	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	153000517	153000517	T	A	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	missense	c.528	p.L176F	1.000	pfam_Ubiquitin-int_motif,superfamily_SH3_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	79	0	0	89	59	39.86	-	-	-	A	153000517	T	A	153000517	3	1	869	1	0	0	0	0	1	0	0	0	15340	1403	49	5	1081	5	STAM2	2	153000517	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09	57224780	153000517	90198856	18	71364										
ARPP21	0	genome.wustl.edu	37	chr3	35725220	35725220	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttctttcccccctcctagtcAggagcaggaaaaggtaaact	8	12	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	35725220	35725220	A	G	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	silent	c.174	p.S58	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	47	0	0	14	12	46.15	-	-	-	G	35725220	A	G	35725220	2	3	869	1	0	0	0	0	0	0	0	1	982	175	7	5		5	ARPP21	3	35725220	Silent	SNP	A	TCGA-E9-A244-01A-11D-A167-09		35725220	162297210	19	71365										
SETD2	0	genome.wustl.edu	37	chr3	47164556	47164556	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	acatcttttaattgcttcatTttctgaagtccttttagatt	4	7	3	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	47164556	47164556	T	G	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.1570	p.N524H	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	44	0	0	50	15	23.08	-	-	-	G	47164556	T	G	47164556	3	3	869	1	0	0	0	0	1	0	0	0	14219	1841	64	5	6200	5	SETD2	3	47164556	Missense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09	11439336	47164556	150857874	20	71366										
DOCK3	0	genome.wustl.edu	37	chr3	51263131	51263131	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggagaagggggatttcgagaGaggaggaaagagtgtacaaa	18	2	0	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	51263131	51263131	G	C	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.1304	p.R435T	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	47	0	0	49	14	22.22	-	-	-	C	51263131	G	C	51263131	3	2	869	1	0	0	0	0	1	0	0	0	4723	942	33	2	1362	2	DOCK3	3	51263131	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	4098575	51263131	146759299	21	71367										
ATP13A4	0	genome.wustl.edu	37	chr3	193182727	193182727	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	aataaggatgaaacacacatAccttgtcaaagcagacaagg	8	8	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	193182727	193182727	A	T	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	splice_site	c.1461+2	e12+2	1.000	-	-	-	no_errors	ATP13A4	HGNC	ENSG00000127249	28	0	0	57	8	12.12	-	-	-	T	193182727	A	T	193182727	5	4	869	1	0	0	0	0	0	0	1	0	1130	405	14	5	2203	5	ATP13A4	3	193182727	Splice_Site	SNP	A	TCGA-E9-A244-01A-11D-A167-09	141919596	193182727	4839703	22	71368										
LRRC15	0	genome.wustl.edu	37	chr3	194081730	194081730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggccaaccctgcaccccaggCttggcagcccaccagcaaaa	9	18	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	194081730	194081730	C	T	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	missense	c.61	p.A21T	0.707	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	22	0	0	23	6	20.69	-	-	-	T	194081730	C	T	194081730	3	4	869	1	0	0	0	0	1	0	0	0	9036	797	28	4	1706	4	LRRC15	3	194081730	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	899003	194081730	3940700	23	71369										
LRRC66	0	genome.wustl.edu	37	chr4	52861775	52861775	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctccttcccagagttctatcAggaattacggtggcgtgtgg	12	10	2	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	4	52861775	52861775	A	T	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	silent	c.1413	p.P471	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	41	0	0	68	17	20	-	-	-	T	52861775	A	T	52861775	2	4	869	1	0	0	0	0	0	0	0	1	9084	175	7	5		5	LRRC66	4	52861775	Silent	SNP	A	TCGA-E9-A244-01A-11D-A167-09		52861775	138292501	24	71370										
SLC9A3	0	genome.wustl.edu	37	chr5	485334	485334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cgccacgaaagattcaaacaCattgtacagaacctgcaggg	9	11	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	485334	485334	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	69_37n	-1	known	missense	c.688	p.V230M	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_bac,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230	42	0	0	55	27	32.93	-	-	-	T	485334	C	T	485334	3	4	869	1	0	0	0	0	1	0	0	0	14802	478	17	4	1872	4	SLC9A3	5	485334	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09		485334	180429926	25	71371										
PCDHA1	0	genome.wustl.edu	37	chr5	140167566	140167566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cgagaacgacaacgcgccggCgctgctggcgcctcgagtgg	16	14	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	140167566	140167566	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	missense	c.1691	p.A564V	0.003	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	24	0	0	16	16	48.48	-	-	-	T	140167566	C	T	140167566	3	4	869	1	0	0	0	0	1	0	0	0	11592	768	27	1	1693	1	PCDHA1	5	140167566	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	139682232	140167566	40747694	26	71372										
SLC36A1	0	genome.wustl.edu	37	chr5	150846797	150846797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tcctgattgtcacccagctgGgattctgctgtgtctatttt	9	10	3	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	150846797	150846797	G	T	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	nonsense	c.457	p.G153*	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	87	0	0	74	24	24.49	-	-	-	T	150846797	G	T	150846797	4	4	869	1	0	0	0	0	0	1	0	0	14682	1233	43	4	475	4	SLC36A1	5	150846797	Nonsense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	10679231	150846797	30068463	27	71373										
NOTCH4	0	genome.wustl.edu	37	chr6	32188550	32188550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cacctgtccaggtttctgggCagaggcaggtgtaggtgtcc	15	10	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	32188550	32188550	C	A	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.905	p.C302F	1.000	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	26	0	0	44	19	30.16	-	-	-	A	32188550	C	A	32188550	3	1	869	1	0	0	0	0	1	0	0	0	10623	710	25	4	5210	4	NOTCH4	6	32188550	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09		32188550	138926517	28	71374										
SCUBE3	0	genome.wustl.edu	37	chr6	35213839	35213839	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	acaagcgaggccaacagcgcCcgtggcttccagattcccta	10	15	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	35213839	35213839	C	T	SNP	SCUBE3	ENST00000394681	human	ensembl	69_37n	1	known	silent	c.2766	p.A922	0.992	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_EGF-like_Ca-bd,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_dom,pfam_CUB,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,prints_Thrombomodulin,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	SCUBE3	HGNC	ENSG00000146197	52	0	0	53	13	19.4	-	-	-	T	35213839	C	T	35213839	2	4	869	1	0	0	0	0	0	0	0	1	14034	610	22	4		4	SCUBE3	6	35213839	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09	3025289	35213839	135901228	29	71375										
DST	0	genome.wustl.edu	37	chr6	56473334	56473334	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttgactggatgattccaccaGtttgaacctgatatgtgagg	11	7	0	5			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	56473334	56473334	G	C	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.5993	p.T1998S	0.999	pfam_Plectin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	42	0	0	31	17	35.42	-	-	-	C	56473334	G	C	56473334	3	2	869	1	0	0	0	0	1	0	0	0	4818	1044	36	4		4	DST	6	56473334	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	21259495	56473334	114641733	30	71376										
SCML4	0	genome.wustl.edu	37	chr6	108067977	108067977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gcagtcgatgcaggcttggaCggcctgctgcagcaccgccg	15	14	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	108067977	108067977	C	T	SNP	SCML4	ENST00000369021	human	ensembl	69_37n	-1	known	missense	c.316	p.V106I	0.989	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285	14	0	0	23	6	20.69	-	-	-	T	108067977	C	T	108067977	3	4	869	1	0	0	0	0	1	0	0	0	13999	536	19	1	861	1	SCML4	6	108067977	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	51594643	108067977	63047090	31	71377										
GLCCI1	0	genome.wustl.edu	37	chr7	8126035	8126035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctcatcccgggtttcctttaCgtctctttctgatgacacca	6	14	3	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	7	8126035	8126035	C	T	SNP	GLCCI1	ENST00000223145	human	ensembl	69_37n	1	known	missense	c.1511	p.T504M	0.062	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	45	0	0	41	11	21.15	-	-	-	T	8126035	C	T	8126035	3	4	869	1	0	0	0	0	1	0	0	0	6483	536	19	1	1541	1	GLCCI1	7	8126035	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09		8126035	151012628	32	71378										
PEX1	0	genome.wustl.edu	37	chr7	92122328	92122328	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	attgggcattgtaaagtaaaGctttcagatcagctccagta	9	7	2	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	7	92122328	92122328	G	C	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	missense	c.3146	p.A1049G	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	39	0	0	50	14	21.88	-	-	-	C	92122328	G	C	92122328	3	2	869	1	0	0	0	0	1	0	0	0	11809	971	34	4	725	4	PEX1	7	92122328	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	83996293	92122328	67016335	33	71379										
DLC1	0	genome.wustl.edu	37	chr8	12956004	12956005	+	Frame_Shift_Ins	INS	-	-	T													0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	caggttcatctgggccacagINSactggcagttaatctgtagt							TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	8	12956004	12956005	-	T	INS	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3071_3070	p.S1024fs	1.000:1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	55	0	0	25	11	30.56	-	-	-	T	12956005	-	T	12956004	7	5	869	1	0	1	1	0	0	0	0	0	4586	942	33	0	1551	0	DLC1	8	12956004	Frame_Shift_Ins	INS	-	TCGA-E9-A244-01A-11D-A167-09		12956004	133408018	34	71380										
EEF1D	0	genome.wustl.edu	37	chr8	144662368	144662368	+	Nonstop_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	agctgggccatgtccgtctcAtcatcccactgtggggaaag	12	12	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	8	144662368	144662368	A	G	SNP	EEF1D	ENST00000530109	human	ensembl	69_37n	-1	putative	nonstop	c.244	p.*82R	0.985	pfam_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EEF1D	HGNC	ENSG00000104529	29	0	0	38	9	19.15	-	-	-	G	144662368	A	G	144662368	4	3	869	1	0	0	0	0	0	0	0	0	4961	214	8	5	232	5	EEF1D	8	144662368	Nonstop_Mutation	SNP	A	TCGA-E9-A244-01A-11D-A167-09	131706364	144662368	1701654	35	71381										
RNF208	0	genome.wustl.edu	37	chr9	140115554	140115554	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	agctcagggaacttttcaggGtggacaatcttcatggcctc	11	10	4	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	9	140115554	140115554	G	C	SNP	RNF208	ENST00000391553	human	ensembl	69_37n	-1	known	missense	c.111	p.H37Q	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF208	HGNC	ENSG00000212864	16	0	0	4	11	73.33	-	-	-	C	140115554	G	C	140115554	3	2	869	1	0	0	0	0	1	0	0	0	13561	1252	44	4	678	4	RNF208	9	140115554	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		140115554	1097877	36	71382										
MYOF	0	genome.wustl.edu	37	chr10	95072909	95072909	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tccggaatcatgtccaatctGcatttctctggtgattttgc	8	10	3	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	95072909	95072909	G	C	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.5757	p.C1919W	0.961	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	75	0	0	109	20	15.38	-	-	-	C	95072909	G	C	95072909	3	2	869	1	0	0	0	0	1	0	0	0	10161	1311	46	4	444	4	MYOF	10	95072909	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		95072909	40461838	37	71383										
ZNF511	0	genome.wustl.edu	37	chr10	135165568	135165568	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gacgaccagctggtggtgctGttccctgtccagaagccgaa	13	12	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	135165568	135165568	G	T	SNP	ZNF511	ENST00000368554	human	ensembl	69_37n	1	known	silent	c.663	p.L221	0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	26	0	0	25	5	16.67	-	-	-	T	135165568	G	T	135165568	2	4	869	1	0	0	0	0	0	0	0	1	18051	1364	48	4		4	ZNF511	10	135165568	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	40092659	135165568	369179	38	71384										
ZNF511	0	genome.wustl.edu	37	chr10	135165631	135165631	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ccacgaggtcagggcaggggCcccatccttccaggtgggca	15	14	1	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	135165631	135165631	C	T	SNP	ZNF511	ENST00000368554	human	ensembl	69_37n	1	known	silent	c.726	p.G242	0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	23	0	0	24	5	17.24	-	-	-	T	135165631	C	T	135165631	2	4	869	1	0	0	0	0	0	0	0	1	18051	726	26	4		4	ZNF511	10	135165631	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09	63	135165631	369116	39	71385										
KCNA4	0	genome.wustl.edu	37	chr11	30033730	30033730	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	actgtagcggactgaactgtAgccgccaccgccctcatcct	9	16	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	30033730	30033730	A	T	SNP	KCNA4	ENST00000328224	human	ensembl	69_37n	-1	known	missense	c.496	p.Y166N	1.000	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	35	0	0	32	8	20	-	-	-	T	30033730	A	T	30033730	3	4	869	1	0	0	0	0	1	0	0	0	8059	420	15	5	1469	5	KCNA4	11	30033730	Missense_Mutation	SNP	A	TCGA-E9-A244-01A-11D-A167-09		30033730	104972786	40	71386										
EHD1	0	genome.wustl.edu	37	chr11	64622246	64622246	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	accatcagccgcgcgatgtcGttggccagcatgtcatccac	10	15	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	64622246	64622246	G	A	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.1164	p.N388	0.997	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	25	0	0	43	22	33.85	-	-	-	A	64622246	G	A	64622246	2	1	869	1	0	0	0	0	0	0	0	1	5012	1136	40	1		1	EHD1	11	64622246	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	34588516	64622246	70384270	41	71387										
USP28	0	genome.wustl.edu	37	chr11	113704197	113704197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	atagatccagggctgcagacGggtctacaaattttctattt	9	8	2	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	113704197	113704197	G	A	SNP	USP28	ENST00000003302	human	ensembl	69_37n	-1	known	missense	c.704	p.P235L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_UBA-like,pfscan_Peptidase_C19	-	no_errors	USP28	HGNC	ENSG00000048028	49	0	0	28	34	54.84	-	-	-	A	113704197	G	A	113704197	3	1	869	1	0	0	0	0	1	0	0	0	17155	1116	39	1	2605	1	USP28	11	113704197	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	49081951	113704197	21302319	42	71388										
CBL	0	genome.wustl.edu	37	chr11	119170209	119170209	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttcctatttcttctagatgtCactgaaggttcccaagttcc	6	11	3	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	119170209	119170209	C	A	SNP	CBL	ENST00000264033	human	ensembl	69_37n	1	known	silent	c.2439	p.V813	0.996	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	19	0	0	15	9	37.5	-	-	-	A	119170209	C	A	119170209	2	1	869	1	0	0	0	0	0	0	0	1	2725	813	29	2		2	CBL	11	119170209	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09	5466012	119170209	15836307	43	71389										
OR8B2	0	genome.wustl.edu	37	chr11	124252388	124252388	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	aaactgtagatgaggggattGagcatgggcaccacattagt	13	6	0	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	124252388	124252388	G	A	SNP	OR8B2	ENST00000375013	human	ensembl	69_37n	-1	known	silent	c.852	p.L284	0.460	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293	41	0	0	50	34	40	-	-	-	A	124252388	G	A	124252388	2	1	869	1	0	0	0	0	0	0	0	1	11300	1277	45	2		2	OR8B2	11	124252388	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	5082179	124252388	10754128	44	71390										
TMEM218	0	genome.wustl.edu	37	chr11	124971139	124971140	+	Frame_Shift_Ins	INS	-	-	A													0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggaattcaccagctcgcgggINSaaaagcaacagaactgatgt							TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	124971139	124971140	-	A	INS	TMEM218	ENST00000455225	human	ensembl	69_37n	-1	known	frame_shift_ins	c.171_170	p.R59fs	0.993:0.998	NULL	NULL	-	no_errors	TMEM218	HGNC	ENSG00000150433	35	0	0	60	12	16.67	-	-	-	A	124971140	-	A	124971139	7	5	869	1	0	1	1	0	0	0	0	0	16236	1165	41	0	184	0	TMEM218	11	124971139	Frame_Shift_Ins	INS	-	TCGA-E9-A244-01A-11D-A167-09	718751	124971139	10035377	45	71391										
NCKAP5L	0	genome.wustl.edu	37	chr12	50188850	50188850	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gtggcctctgtgcggcggttCagcgctggcagcttgctctt	15	12	3	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	50188850	50188850	C	A	SNP	NCKAP5L	ENST00000433948	human	ensembl	69_37n	-1	putative	nonsense	c.1936	p.E646*	0.950	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCKAP5L	HGNC	ENSG00000167566	33	0	0	13	10	43.48	-	-	-	A	50188850	C	A	50188850	4	1	869	1	0	0	0	0	0	1	0	0	10296	813	29	2	1235	2	NCKAP5L	12	50188850	Nonsense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09		50188850	83663045	46	71392										
KRT76	0	genome.wustl.edu	37	chr12	53169205	53169205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cttccaccaggtcctgcatgCttttcagctctccctccagg	7	17	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	53169205	53169205	C	T	SNP	KRT76	ENST00000332411	human	ensembl	69_37n	-1	known	missense	c.782	p.S261N	0.770	pfam_F,prints_Keratin_II	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069	47	0	0	25	15	37.5	-	-	-	T	53169205	C	T	53169205	3	4	869	1	0	0	0	0	1	0	0	0	8542	797	28	4	1166	4	KRT76	12	53169205	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	2980355	53169205	80682690	47	71393										
PTPRB	0	genome.wustl.edu	37	chr12	70970306	70970306	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	aagggactgaaccaccttgcCgtcatgagacaatgttacct	9	11	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	70970306	70970306	C	G	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	missense	c.2698	p.G900R	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	41	0	0	72	8	10	-	-	-	G	70970306	C	G	70970306	3	3	869	1	0	0	0	0	1	0	0	0	12879	652	23	3	4045	3	PTPRB	12	70970306	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	17801101	70970306	62881589	48	71394										
C12orf74	0	genome.wustl.edu	37	chr12	93100671	93100671	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tgttacctttcgaagagcctGccaggaagcccaaaggattc	10	11	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	93100671	93100671	G	A	SNP	C12orf74	ENST00000397833	human	ensembl	69_37n	1	known	silent	c.264	p.L88	0.001	NULL	NULL	-	no_errors	C12orf74	HGNC	ENSG00000214215	13	0	0	13	8	38.1	-	-	-	A	93100671	G	A	93100671	2	1	869	1	0	0	0	0	0	0	0	1	1726	1306	46	4		4	C12orf74	12	93100671	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	22130365	93100671	40751224	49	71395										
HCFC2	0	genome.wustl.edu	37	chr12	104459971	104459971	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	atcagtggtttctgccagctGttagaggagatatccctcca	10	10	2	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	104459971	104459971	G	C	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	1	known	missense	c.190	p.V64L	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727	50	0	0	44	18	29.03	-	-	-	C	104459971	G	C	104459971	3	2	869	1	0	0	0	0	1	0	0	0	7044	1377	48	4	196	4	HCFC2	12	104459971	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	11359300	104459971	29391924	50	71396										
NOS1	0	genome.wustl.edu	37	chr12	117691526	117691526	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gatttttgggagtcagagtaGgaggagacgctgttgaatcg	16	4	1	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	117691526	117691526	G	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	silent	c.2565	p.S855	0.016	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	45	0	0	27	25	48.08	-	-	-	T	117691526	G	T	117691526	2	4	869	1	0	0	0	0	0	0	0	1	10613	987	35	4		4	NOS1	12	117691526	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	13231555	117691526	16160369	51	71397										
SPTB	0	genome.wustl.edu	37	chr14	65267588	65267588	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gggttttccgtaaagacatcTgttagggaaaagggtgtact	13	5	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	65267588	65267588	T	G	SNP	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	splice_site	c.764-2	e7-2	1.000	-	-	-	no_errors	SPTB	HGNC	ENSG00000070182	41	0	0	51	17	25	-	-	-	G	65267588	T	G	65267588	5	3	869	1	0	0	0	0	0	0	1	0	15209	1594	55	5	6409	5	SPTB	14	65267588	Splice_Site	SNP	T	TCGA-E9-A244-01A-11D-A167-09		65267588	42081952	52	71398										
ADAM20	0	genome.wustl.edu	37	chr14	70989944	70989944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctctttacattgtatatcatGgttattacacgtcttttcat	4	8	4	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	70989944	70989944	G	T	SNP	ADAM20	ENST00000256389	human	ensembl	69_37n	-1	known	missense	c.1681	p.H561N	0.805	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	54	0	0	49	6	10.91	-	-	-	T	70989944	G	T	70989944	3	4	869	1	0	0	0	0	1	0	0	0	242	1348	47	4	653	4	ADAM20	14	70989944	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	5722356	70989944	36359596	53	71399										
DICER1	0	genome.wustl.edu	37	chr14	95582139	95582139	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	caccagtatcaaccgacttgGaacacttgtttctcaagatc	6	12	2	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	95582139	95582139	G	C	SNP	DICER1	ENST00000343455	human	ensembl	69_37n	-1	known	missense	c.1772	p.S591C	1.000	pfscan_Helicase_C	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697	47	0	0	34	17	33.33	-	-	-	C	95582139	G	C	95582139	3	2	869	1	0	0	0	0	1	0	0	0	4557	1174	41	2	4064	2	DICER1	14	95582139	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	24592195	95582139	11767401	54	71400										
CHRFAM7A	0	genome.wustl.edu	37	chr15	30664509	30664509	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	agggtagggctctttgcagcActcatagaacctttcactcc	9	12	3	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	15	30664509	30664509	A	C	SNP	CHRFAM7A	ENST00000299847	human	ensembl	69_37n	-1	known	missense	c.364	p.C122G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664	17	0	0	7	11	61.11	-	-	-	C	30664509	A	C	30664509	3	2	869	1	0	0	0	0	1	0	0	0	3404	159	6	5	890	5	CHRFAM7A	15	30664509	Missense_Mutation	SNP	A	TCGA-E9-A244-01A-11D-A167-09		30664509	71866883	55	71401										
PCSK6	0	genome.wustl.edu	37	chr15	101910615	101910615	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggtctcctcggcgtgggtgtGagatggaggtgcgaaccacc	17	10	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	15	101910615	101910615	G	T	SNP	PCSK6	ENST00000348070	human	ensembl	69_37n	-1	known	nonsense	c.1643	p.S548*	0.857	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,pfam_PLAC,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel,pfscan_PLAC	-	no_errors	PCSK6	HGNC	ENSG00000140479	26	0	0	28	7	20	-	-	-	T	101910615	G	T	101910615	4	4	869	1	0	0	0	0	0	1	0	0	11677	1294	45	2	1736	2	PCSK6	15	101910615	Nonsense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	71246106	101910615	620777	56	71402										
IGFALS	0	genome.wustl.edu	37	chr16	1840820	1840820	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cagtcccaggggttaccctcCagccacaggcgctccaggcc	11	18	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	1840820	1840820	C	T	SNP	IGFALS	ENST00000415638	human	ensembl	69_37n	-1	known	silent	c.1713	p.L571	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769	12	0	0	14	5	26.32	-	-	-	T	1840820	C	T	1840820	2	4	869	1	0	0	0	0	0	0	0	1	7631	581	21	4		4	IGFALS	16	1840820	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09		1840820	88513933	57	71403										
ZP2	0	genome.wustl.edu	37	chr16	21221500	21221500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	actgttatttccctttcatcGcaagtgacagtgcctaagga	8	10	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	21221500	21221500	G	A	SNP	ZP2	ENST00000219593	human	ensembl	69_37n	-1	known	silent	c.165	p.C55	0.573	NULL	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP2	HGNC	ENSG00000103310	39	0	0	68	16	19.05	-	-	-	A	21221500	G	A	21221500	2	1	869	1	0	0	0	0	0	0	0	1	18309	1079	38	1		1	ZP2	16	21221500	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	19380680	21221500	69133253	58	71404										
SLC38A7	0	genome.wustl.edu	37	chr16	58712260	58712260	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gcatatttctggaaaccaatCtccctggggatggagagggg	14	8	2	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	58712260	58712260	C	A	SNP	SLC38A7	ENST00000219320	human	ensembl	69_37n	-1	known	missense	c.588	p.E196D	1.000	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	59	0	0	46	17	26.98	-	-	-	A	58712260	C	A	58712260	3	1	869	1	0	0	0	0	1	0	0	0	14698	912	32	2	832	2	SLC38A7	16	58712260	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	37490760	58712260	31642493	59	71405										
P2RX5	0	genome.wustl.edu	37	chr17	3593780	3593780	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	atctcacaggtgcccctggcCaagttctctctccgcaggca	9	16	3	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	3593780	3593780	C	G	SNP	P2RX5	ENST00000435558	human	ensembl	69_37n	-1	known	missense	c.474	p.L158F	0.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454	24	0	0	35	18	33.96	-	-	-	G	3593780	C	G	3593780	3	3	869	1	0	0	0	0	1	0	0	0	11416	593	21	4	830	4	P2RX5	17	3593780	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09		3593780	77601430	60	71406										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	14	25	62.5	-	-	-	T	7578406	C	T	7578406	3	4	869	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	3984626	7578406	73616804	61	71407										
RHBDF2	0	genome.wustl.edu	37	chr17	74469974	74469974	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggcaccgctggaggctggctCctcgcaggtcctggagacag	16	13	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	74469974	74469974	C	A	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	nonsense	c.1672	p.E558*	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	26	0	0	31	5	13.89	-	-	-	A	74469974	C	A	74469974	4	1	869	1	0	0	0	0	0	1	0	0	13404	864	30	2	922	2	RHBDF2	17	74469974	Nonsense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	66891568	74469974	6725236	62	71408										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623249	74623249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggtgatgcaccggaggctccCagcggggaggctggccagga	19	11	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	74623249	74623249	C	T	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	missense	c.1072	p.G358R	0.020	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	12	0	0	31	10	24.39	-	-	-	T	74623249	C	T	74623249	3	4	869	1	0	0	0	0	1	0	0	0	15314	594	21	4	754	4	ST6GALNAC1	17	74623249	Missense_Mutation	SNP	C	TCGA-E9-A244-01A-11D-A167-09	153275	74623249	6571961	63	71409										
DCC	0	genome.wustl.edu	37	chr18	50918111	50918111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ccacccccatgctcccaccaGtaggtgtacaggctgtggct	10	16	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	18	50918111	50918111	G	T	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.2542	p.V848L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	37	0	0	30	4	11.76	-	-	-	T	50918111	G	T	50918111	3	4	869	1	0	0	0	0	1	0	0	0	4313	1029	36	4	2608	4	DCC	18	50918111	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		50918111	27159137	64	71410										
CDH19	0	genome.wustl.edu	37	chr18	64239349	64239349	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tgagatcgcactggctgcttGactttctttgtttgagagtt	11	7	1	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	18	64239349	64239349	G	A	SNP	CDH19	ENST00000262150	human	ensembl	69_37n	-1	known	silent	c.93	p.V31	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	54	0	0	99	34	25.56	-	-	-	A	64239349	G	A	64239349	2	1	869	1	0	0	0	0	0	0	0	1	3133	1277	45	2		2	CDH19	18	64239349	Silent	SNP	G	TCGA-E9-A244-01A-11D-A167-09	13321238	64239349	13837899	65	71411										
ACTL9	0	genome.wustl.edu	37	chr19	8808585	8808585	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctagcttctcgcggttggtgGccgggctgaagggtgggtcg	19	9	1	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	8808585	8808585	G	C	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	missense	c.467	p.A156G	0.998	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	13	0	0	14	5	26.32	-	-	-	C	8808585	G	C	8808585	3	2	869	1	0	0	0	0	1	0	0	0	203	1203	42	4	787	4	ACTL9	19	8808585	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		8808585	50320398	66	71412										
ZNF44	0	genome.wustl.edu	37	chr19	12384316	12384316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	acactgcttacattcatacgGtttctccccagtgtgtattt	6	11	2	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	12384316	12384316	G	A	SNP	ZNF44	ENST00000393337	human	ensembl	69_37n	-1	known	missense	c.898	p.P300S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857	72	0	0	91	38	29.46	-	-	-	A	12384316	G	A	12384316	3	1	869	1	0	0	0	0	1	0	0	0	18008	1261	44	4	1097	4	ZNF44	19	12384316	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	3575731	12384316	46744667	67	71413										
RYR1	0	genome.wustl.edu	37	chr19	38979876	38979876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttgaagatgattgagcctgaGgtcttcactgaggaagaaga	13	5	2	8			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	38979876	38979876	G	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.5607	p.E1869D	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	54	0	0	64	10	13.51	-	-	-	T	38979876	G	T	38979876	3	4	869	1	0	0	0	0	1	0	0	0	13854	991	35	4	5745	4	RYR1	19	38979876	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	26595560	38979876	20149107	68	71414										
ZNF552	0	genome.wustl.edu	37	chr19	58319711	58319711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	tgtgcaatgaggtggtacttGtgcctaaaaaatttctgaca	10	6	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	58319711	58319711	G	T	SNP	ZNF552	ENST00000391701	human	ensembl	69_37n	-1	known	missense	c.921	p.H307Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935	71	0	0	57	14	19.72	-	-	-	T	58319711	G	T	58319711	3	4	869	1	0	0	0	0	1	0	0	0	18080	1368	48	4	306	4	ZNF552	19	58319711	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	19339835	58319711	809272	69	71415										
MMP9	0	genome.wustl.edu	37	chr20	44639885	44639885	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	accaccgacggtcgctccgaCggcttgccctggtgcagtac	12	16	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	44639885	44639885	C	T	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	silent	c.753	p.D251	1.000	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	17	0	0	11	6	35.29	-	-	-	T	44639885	C	T	44639885	2	4	869	1	0	0	0	0	0	0	0	1	9741	535	19	1		1	MMP9	20	44639885	Silent	SNP	C	TCGA-E9-A244-01A-11D-A167-09		44639885	18385635	70	71416										
ETS2	0	genome.wustl.edu	37	chr21	40191520	40191520	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ctggaacagccagtcgtcctTgctggatgtgcaacgggttc	13	11	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	21	40191520	40191520	T	A	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	1	known	nonsense	c.905	p.L302*	0.998	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	40	0	0	64	13	16.88	-	-	-	A	40191520	T	A	40191520	4	1	869	1	0	0	0	0	0	1	0	0	5313	1821	63	5	931	5	ETS2	21	40191520	Nonsense_Mutation	SNP	T	TCGA-E9-A244-01A-11D-A167-09		40191520	7938375	71	71417										
COL18A1	0	genome.wustl.edu	37	chr21	46925826	46925826	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	gagggctggctcatcttcgtGgccgagcaggaggagctcta	16	10	3	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	21	46925826	46925826	G	C	SNP	COL18A1	ENST00000423214	human	ensembl	69_37n	1	putative	missense	c.149	p.W50S	0.284	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,superfamily_C-type_lectin_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL18A1	HGNC	ENSG00000182871	28	0	0	56	15	21.13	-	-	-	C	46925826	G	C	46925826	3	2	869	1	0	0	0	0	1	0	0	0	3705	1335	47	4	4658	4	COL18A1	21	46925826	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	6734306	46925826	1204069	72	71418										
PEX26	0	genome.wustl.edu	37	chr22	18562666	18562666	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ggaggtgaagtgctccctgtGtgttgtggggatccaggccc	17	9	0	1			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	18562666	18562666	G	C	SNP	PEX26	ENST00000329627	human	ensembl	69_37n	1	known	missense	c.257	p.C86S	1.000	pfam_Pex26	pfam_Pex26	-	no_errors	PEX26	HGNC	ENSG00000215193	55	0	0	80	24	23.08	-	-	-	C	18562666	G	C	18562666	3	2	869	1	0	0	0	0	1	0	0	0	11820	1377	48	4	263	4	PEX26	22	18562666	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		18562666	32741900	73	71419										
ELFN2	0	genome.wustl.edu	37	chr22	37771398	37771398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	ttgttctcgttgagccgcagGtcgtgcacggtgctattgat	13	9	1	2			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	37771398	37771398	G	T	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.177	p.D59E	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	54	0	0	114	48	29.45	-	-	-	T	37771398	G	T	37771398	3	4	869	1	0	0	0	0	1	0	0	0	5095	1252	44	4	2289	4	ELFN2	22	37771398	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	19208732	37771398	13533168	74	71420										
PDGFB	0	genome.wustl.edu	37	chr22	39621808	39621808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	cttgcccttggggggccggcGgactcgcaccgtccgaatgg	16	14	0	0			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	39621808	39621808	G	A	SNP	PDGFB	ENST00000331163	human	ensembl	69_37n	-1	known	missense	c.646	p.R216C	1.000	NULL	pfam_PD_growth_factor,pfam_PDGF_N,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PDGFB	HGNC	ENSG00000100311	47	0	0	40	18	31.03	-	-	-	A	39621808	G	A	39621808	3	1	869	1	0	0	0	0	1	0	0	0	11731	1116	39	1	83	1	PDGFB	22	39621808	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09	1850410	39621808	11682758	75	71421										
FATE1	0	genome.wustl.edu	37	chrX	150889973	150889973	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0657894736842105	5	0.857283006460504	1.04003139717425	0.540816326530612	1.35204081632653	0.294117647058823	0.930327025915261	0	catacgtttccattatgatcGgtaagagctgagggtctgtg	12	7	1	3			TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	X	150889973	150889973	G	C	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	1	known	missense	c.341	p.R114P	0.016	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	36	0	0	18	7	28	-	-	-	C	150889973	G	C	150889973	3	2	869	1	0	0	0	0	1	0	0	0	5739	1130	39	3	351	3	FATE1	23	150889973	Missense_Mutation	SNP	G	TCGA-E9-A244-01A-11D-A167-09		150889973	4380587	76	71422										
VPS13D	0	genome.wustl.edu	37	chr1	12409220	12409220	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	taacccttatttctgtggcaGagccagtggtgcttcctgct	10	11	1	1			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	12409220	12409220	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	splice_site	c.9221-1	e45-1	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707	48	0	0	32	18	35.29	-	-	-	A	12409220	G	A	12409220	5	1	870	1	0	0	0	0	0	0	1	0	17289	956	33	2	9398	2	VPS13D	1	12409220	Splice_Site	SNP	G	TCGA-E9-A245-01A-22D-A16D-09		12409220	236841401	1	71423										
ZC3H12A	0	genome.wustl.edu	37	chr1	37948869	37948869	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	agccaccgcagccttctctgCctttggccgggccatgggtg	13	15	1	0			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	37948869	37948869	C	G	SNP	ZC3H12A	ENST00000373082	human	ensembl	69_37n	1	known	missense	c.1457	p.A486G	0.028	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	15	0	0	7	7	50	-	-	-	G	37948869	C	G	37948869	3	3	870	1	0	0	0	0	1	0	0	0	17657	739	26	4	1475	4	ZC3H12A	1	37948869	Missense_Mutation	SNP	C	TCGA-E9-A245-01A-22D-A16D-09	25539649	37948869	211301752	2	71424										
ARNT	0	genome.wustl.edu	37	chr1	150786681	150786681	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	tgcccacaccaaactgggaaGtacgagtcttagcagtagcc	10	12	1	0			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	150786681	150786681	G	T	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	missense	c.1985	p.T662N	0.975	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	38	0	0	36	4	10	-	-	-	T	150786681	G	T	150786681	3	4	870	1	0	0	0	0	1	0	0	0	969	1029	36	4	396	4	ARNT	1	150786681	Missense_Mutation	SNP	G	TCGA-E9-A245-01A-22D-A16D-09	112837812	150786681	98463940	3	71425										
SP3	0	genome.wustl.edu	37	chr2	174777831	174777831	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	tctgtgcctctgtaattcatCacttcgagtaaatcttttac	5	10	5	0			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	2	174777831	174777831	C	A	SNP	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	missense	c.1996	p.D666Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	88	0	0	57	10	14.93	-	-	-	A	174777831	C	A	174777831	3	1	870	1	0	0	0	0	1	0	0	0	15054	826	29	2	357	2	SP3	2	174777831	Missense_Mutation	SNP	C	TCGA-E9-A245-01A-22D-A16D-09		174777831	68421542	4	71426										
GLB1	0	genome.wustl.edu	37	chr3	33110406	33110406	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	gaaaatattccacatcatggTcctcagaaaactggtactgt	7	9	2	1			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	33110406	33110406	T	C	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.446	p.D149G	0.996	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	47	0	0	32	7	17.95	-	-	-	C	33110406	T	C	33110406	3	2	870	1	0	0	0	0	1	0	0	0	6479	1667	58	5	1787	5	GLB1	3	33110406	Missense_Mutation	SNP	T	TCGA-E9-A245-01A-22D-A16D-09		33110406	164912024	5	71427										
ASTE1	0	genome.wustl.edu	37	chr3	130733046	130733047	+	Frame_Shift_Ins	INS	-	-	T													0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	ggtattctgtttcttctgccINStttttttttttgaatttgat							TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	130733046	130733047	-	T	INS	ASTE1	ENST00000264992	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1895_1894	p.R632fs	0.003:0.014	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	53	0	0	27	5	15.62	-	-	-	T	130733047	-	T	130733046	7	5	870	1	0	1	1	0	0	0	0	0	1066	681	24	0	148	0	ASTE1	3	130733046	Frame_Shift_Ins	INS	-	TCGA-E9-A245-01A-22D-A16D-09	97622640	130733046	67289384	6	71428										
FAM194A	0	genome.wustl.edu	37	chr3	150421569	150421569	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	tcctcctcctcctccacctcTtcctcctcctcctccacctc	0	26	1	0			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	150421569	150421569	T	C	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	silent	c.117	p.E39	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	14	0	0	17	9	34.62	-	-	-	C	150421569	T	C	150421569	2	2	870	1	0	0	0	0	0	0	0	1	5568	1606	56	5		5	FAM194A	3	150421569	Silent	SNP	T	TCGA-E9-A245-01A-22D-A16D-09	19688523	150421569	47600861	7	71429										
CARTPT	0	genome.wustl.edu	37	chr5	71015730	71015732	+	In_Frame_Del	DEL	GAA	GAA	-													0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	gaagcgctgcaagaagtcttGaagaagctcaagagtaaacg							TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	5	71015730	71015732	GAA	-	DEL	CARTPT	ENST00000296777	human	ensembl	69_37n	1	known	in_frame_del	c.183_185	p.K63in_frame_del	1.000:1.000:1.000	pfam_CART	pfam_CART,superfamily_CART	-	no_errors	CARTPT	HGNC	ENSG00000164326	44	0	0	24	6	20	-	-	-	-	71015732	GAA	-	71015730	7	5	870	1	0	1	0	1	0	0	0	0	2684	1281	45	0	189	0	CARTPT	5	71015730	In_Frame_Del	DEL	GAA	TCGA-E9-A245-01A-22D-A16D-09		71015730	109899530	8	71430										
FAM135B	0	genome.wustl.edu	37	chr8	139190894	139190894	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	cgtgagccaggccagatcctTgcttatctgctcagcgatct	10	13	3	2			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	8	139190894	139190894	T	C	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.913	p.K305E	0.998	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	61	0	0	57	8	12.31	-	-	-	C	139190894	T	C	139190894	3	2	870	1	0	0	0	0	1	0	0	0	5489	1821	63	5	3351	5	FAM135B	8	139190894	Missense_Mutation	SNP	T	TCGA-E9-A245-01A-22D-A16D-09		139190894	7173128	9	71431										
PIP5K1B	0	genome.wustl.edu	37	chr9	71509406	71509406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	atatgacttgaaaggctcaaCgtataagcgaagagcatccc	9	9	1	3			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	9	71509406	71509406	C	T	SNP	PIP5K1B	ENST00000478500	human	ensembl	69_37n	1	known	missense	c.743	p.T248M	0.996	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	37	0	0	10	7	41.18	-	-	-	T	71509406	C	T	71509406	3	4	870	1	0	0	0	0	1	0	0	0	12014	536	19	1	641	1	PIP5K1B	9	71509406	Missense_Mutation	SNP	C	TCGA-E9-A245-01A-22D-A16D-09		71509406	69704025	10	71432										
GATA3	0	genome.wustl.edu	37	chr10	8115928	8115929	+	Frame_Shift_Ins	INS	-	-	AT													0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	cccacgccgatgcacccgccINSatccagcctgtcctttggac							TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	10	8115928	8115929	-	AT	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1277_1278	p.S427fs	0.981:0.204	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	41	0	0	17	7	29.17	-	-	-	AT	8115929	-	AT	8115928	7	5	870	1	0	1	1	0	0	0	0	0	6305	594	21	0	1295	0	GATA3	10	8115928	Frame_Shift_Ins	INS	-	TCGA-E9-A245-01A-22D-A16D-09		8115928	127418819	11	71433										
MUC5B	0	genome.wustl.edu	37	chr11	1261520	1261520	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	tgcggaagcaacggcaccatCatcaggaaggctgtggcatg	14	10	2	0			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	11	1261520	1261520	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.3894	p.I1298	0.007	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	16	0	0	10	6	37.5	-	-	-	A	1261520	C	A	1261520	2	1	870	1	0	0	0	0	0	0	0	1	10051	816	29	2		2	MUC5B	11	1261520	Silent	SNP	C	TCGA-E9-A245-01A-22D-A16D-09		1261520	133744996	12	71434										
DLGAP5	0	genome.wustl.edu	37	chr14	55647930	55647930	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	agtaattgctaatattcctaCcttttttctctttgtctgac	4	9	2	1			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	14	55647930	55647930	C	A	SNP	DLGAP5	ENST00000247191	human	ensembl	69_37n	-1	known	splice_site	c.580+1	e4+1	1.000	-	-	-	no_errors	DLGAP5	HGNC	ENSG00000126787	216	0	0	97	50	34.01	-	-	-	A	55647930	C	A	55647930	5	1	870	1	0	0	0	0	0	0	1	0	4599	521	18	4	2114	4	DLGAP5	14	55647930	Splice_Site	SNP	C	TCGA-E9-A245-01A-22D-A16D-09		55647930	51701610	13	71435										
IL32	0	genome.wustl.edu	37	chr16	3119020	3119020	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	cctctacttgaaaaagaaagAgatggattacggtgccgagg	12	7	1	3			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	16	3119020	3119020	A	G	SNP	IL32	ENST00000396890	human	ensembl	69_37n	1	known	silent	c.369	p.R123	0.000	NULL	NULL	-	no_errors	IL32	HGNC	ENSG00000008517	18	0	0	7	4	36.36	-	-	-	G	3119020	A	G	3119020	2	3	870	1	0	0	0	0	0	0	0	1	7746	301	11	5		5	IL32	16	3119020	Silent	SNP	A	TCGA-E9-A245-01A-22D-A16D-09		3119020	87235733	14	71436										
N4BP1	0	genome.wustl.edu	37	chr16	48596338	48596338	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	tcttctagttcaggttcacaGattcctttaatatattcctg	5	9	4	1			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	16	48596338	48596338	G	T	SNP	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	silent	c.216	p.I72	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	35	0	0	26	4	13.33	-	-	-	T	48596338	G	T	48596338	2	4	870	1	0	0	0	0	0	0	0	1	10181	932	33	2		2	N4BP1	16	48596338	Silent	SNP	G	TCGA-E9-A245-01A-22D-A16D-09	45477318	48596338	41758415	15	71437										
INCA1	0	genome.wustl.edu	37	chr17	4892728	4892728	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	gtctcccttccttactcgttGatgatgctctgacgccttct	7	14	3	3			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	17	4892728	4892728	G	T	SNP	INCA1	ENST00000396829	human	ensembl	69_37n	-1	known	silent	c.390	p.I130	0.993	NULL	NULL	-	no_errors	INCA1	HGNC	ENSG00000196388	41	0	0	28	4	12.5	-	-	-	T	4892728	G	T	4892728	2	4	870	1	0	0	0	0	0	0	0	1	7786	1280	45	2		2	INCA1	17	4892728	Silent	SNP	G	TCGA-E9-A245-01A-22D-A16D-09		4892728	76302482	16	71438										
DOCK11	0	genome.wustl.edu	37	chrX	117722171	117722171	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.773041363848796	2.02962962962963	0	3.04444444444444	1	1	0	aaaatattactgtggaggttGaagagtttgttccagaaatg	11	3	0	3			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	X	117722171	117722171	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	nonsense	c.1867	p.E623*	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	128	0	0	56	42	42.86	-	-	-	T	117722171	G	T	117722171	4	4	870	1	0	0	0	0	0	1	0	0	4721	1291	45	2	1933	2	DOCK11	23	117722171	Nonsense_Mutation	SNP	G	TCGA-E9-A245-01A-22D-A16D-09		117722171	37548389	17	71439										
ZBTB48	0	genome.wustl.edu	37	chr1	6640763	6640763	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	actgcgacgccactctggacGtggggggcctggtgtttaag	16	10	1	0			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	6640763	6640763	G	T	SNP	ZBTB48	ENST00000377674	human	ensembl	69_37n	1	known	missense	c.94	p.V32L	0.993	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859	33	0	0	14	6	30	-	-	-	T	6640763	G	T	6640763	3	4	871	1	0	0	0	0	1	0	0	0	17645	1145	40	3	96	3	ZBTB48	1	6640763	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09		6640763	242609858	1	71440										
BCL9	0	genome.wustl.edu	37	chr1	147091300	147091300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tttctccagatgaaatggttCcaccttctatgaactcccag	6	12	2	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	147091300	147091300	C	T	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	1	known	missense	c.1339	p.P447S	0.977	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	12	0	0	5	12	70.59	-	-	-	T	147091300	C	T	147091300	3	4	871	1	0	0	0	0	1	0	0	0	1385	855	30	2	1357	2	BCL9	1	147091300	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09	140450537	147091300	102159321	2	71441										
USH2A	0	genome.wustl.edu	37	chr1	216591941	216591941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	gttgcaaaccatttactgtgCgataataaaacatggtctct	7	8	1	0			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	216591941	216591941	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.566	p.R189H	1.000	superfamily_ConA-like_lec_gl,smart_LamG-like	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	65	0	0	52	14	21.21	-	-	-	T	216591941	C	T	216591941	3	4	871	1	0	0	0	0	1	0	0	0	17133	768	27	1	15336	1	USH2A	1	216591941	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09	69500641	216591941	32658680	3	71442										
TTN	0	genome.wustl.edu	37	chr2	179611371	179611371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tttacagcatgacacatgtaCtctcccccttctcctttttg	4	14	2	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	2	179611371	179611371	C	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.15756	p.E5252D	0.993	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	72	0	0	39	13	25	-	-	-	G	179611371	C	G	179611371	3	3	871	1	0	0	0	0	1	0	0	0	16832	564	20	4	94541	4	TTN	2	179611371	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		179611371	63588002	4	71443										
WDR52	0	genome.wustl.edu	37	chr3	113049172	113049172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	atgatctagatattgaatcaCgggttgtcaaatccccatcc	7	10	3	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	113049172	113049172	C	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.3959	p.R1320H	0.019	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	62	0	0	8	32	80	-	-	-	T	113049172	C	T	113049172	3	4	871	1	0	0	0	0	1	0	0	0	17401	536	19	1	1645	1	WDR52	3	113049172	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		113049172	84973258	5	71444										
PPARGC1A	0	genome.wustl.edu	37	chr4	23815386	23815386	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tcgggaacacgacctgtgtcGagaaaaggaccttgaacgag	13	9	0	2			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	4	23815386	23815386	G	A	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	nonsense	c.1720	p.R574*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	43	0	0	42	7	14.29	-	-	-	A	23815386	G	A	23815386	4	1	871	1	0	0	0	0	0	1	0	0	12373	1066	37	1	700	1	PPARGC1A	4	23815386	Nonsense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09		23815386	167338890	6	71445										
ANK2	0	genome.wustl.edu	37	chr4	114257194	114257194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	agagggggcactcaccaagcGgatccgcgtaggcctgcagg	16	12	1	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	4	114257194	114257194	G	A	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.3572	p.R1191Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	17	0	0	24	5	17.24	-	-	-	A	114257194	G	A	114257194	3	1	871	1	0	0	0	0	1	0	0	0	621	1116	39	1	3755	1	ANK2	4	114257194	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09	90441808	114257194	76897082	7	71446										
FAT4	0	genome.wustl.edu	37	chr4	126372690	126372690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tggaagatataaatgataacGggcccatgctgactgtcagt	11	7	1	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	4	126372690	126372690	G	A	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.10519	p.G3507R	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	45	0	0	37	7	15.91	-	-	-	A	126372690	G	A	126372690	3	1	871	1	0	0	0	0	1	0	0	0	5738	1116	39	1	10553	1	FAT4	4	126372690	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09	12115496	126372690	64781586	8	71447										
CMYA5	0	genome.wustl.edu	37	chr5	79035212	79035212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tttcaacgcttgacacagctAtaagtgctgtaaaggtaaat	8	7	1	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	5	79035212	79035212	A	G	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.10624	p.I3542V	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	33	0	0	15	9	37.5	-	-	-	G	79035212	A	G	79035212	3	3	871	1	0	0	0	0	1	0	0	0	3620	449	16	5	10630	5	CMYA5	5	79035212	Missense_Mutation	SNP	A	TCGA-E9-A247-01A-11D-A167-09		79035212	101880048	9	71448										
PCDHGC4	0	genome.wustl.edu	37	chr5	140866811	140866811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	aaggagaatctcgtctaaccCtctacttggctgtgtcccta	8	12	3	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	5	140866811	140866811	C	G	SNP	PCDHGC4	ENST00000306593	human	ensembl	69_37n	1	known	missense	c.2071	p.L691V	0.980	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419	54	0	0	42	10	19.23	-	-	-	G	140866811	C	G	140866811	3	3	871	1	0	0	0	0	1	0	0	0	11643	681	24	4	2073	4	PCDHGC4	5	140866811	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09	61831599	140866811	40048449	10	71449										
HIST1H3F	0	genome.wustl.edu	37	chr6	26250661	26250661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tgcgaatcagtagctcagtcGatttctgatagcggcggatt	12	8	3	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	6	26250661	26250661	G	A	SNP	HIST1H3F	ENST00000446824	human	ensembl	69_37n	-1	known	missense	c.173	p.S58L	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3F	HGNC	ENSG00000256316	44	0	0	29	10	25.64	-	-	-	A	26250661	G	A	26250661	3	1	871	1	0	0	0	0	1	0	0	0	7211	1059	37	1	241	1	HIST1H3F	6	26250661	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09		26250661	144864406	11	71450										
ELN	0	genome.wustl.edu	37	chr7	73474894	73474894	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	gggaaggagatccctcctccTctcagcacctccccagcacc	8	19	1	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	7	73474894	73474894	T	C	SNP	ELN	ENST00000358929	human	ensembl	69_37n	1	known	missense	c.1915	p.S639P	0.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	51	0	0	43	40	48.19	-	-	-	C	73474894	T	C	73474894	3	2	871	1	0	0	0	0	1	0	0	0	5108	1566	54	5		5	ELN	7	73474894	Missense_Mutation	SNP	T	TCGA-E9-A247-01A-11D-A167-09		73474894	85663769	12	71451										
CSMD1	0	genome.wustl.edu	37	chr8	3081256	3081256	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tgcaagagacggtaccttttGaatatcaaggcgatgacaaa	10	7	1	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	8	3081256	3081256	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.4482	p.F1494L	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	24	0	0	20	7	25.93	-	-	-	T	3081256	G	T	3081256	3	4	871	1	0	0	0	0	1	0	0	0	3976	1281	45	2	6387	2	CSMD1	8	3081256	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09		3081256	143282766	13	71452										
WHSC1L1	0	genome.wustl.edu	37	chr8	38173482	38173482	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	cagatgtgtctctgtatgctGaactagtcatttctacatca	7	9	4	2			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	8	38173482	38173482	G	C	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	nonsense	c.1934	p.S645*	1.000	NULL	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	57	0	0	35	49	58.33	-	-	-	C	38173482	G	C	38173482	4	2	871	1	0	0	0	0	0	1	0	0	17460	1294	45	2	2439	2	WHSC1L1	8	38173482	Nonsense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09	35092226	38173482	108190540	14	71453										
RAB18	0	genome.wustl.edu	37	chr10	27798830	27798830	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	cttgaggttcacagatgataCgtttgatccagaacttgcag	10	8	1	5			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	27798830	27798830	C	G	SNP	RAB18	ENST00000423465	human	ensembl	69_37n	1	known	nonsense	c.345	p.Y115*	1.000	pfam_Small_GTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Small_GTPase_Ras,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_start_codon:pseudogene	RAB18	HGNC	ENSG00000099246	71	0	0	64	14	17.95	-	-	-	G	27798830	C	G	27798830	4	3	871	1	0	0	0	0	0	1	0	0	12986	536	19	3	101	3	RAB18	10	27798830	Nonsense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		27798830	107735917	15	71454										
FRMPD2	0	genome.wustl.edu	37	chr10	49448466	49448466	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	ctcgctgcttgtcccacgcaGcctcttcctgagcaggtagc	10	16	1	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	49448466	49448466	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	silent	c.637	p.L213	0.998	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	20	0	0	26	6	18.75	-	-	-	A	49448466	G	A	49448466	2	1	871	1	0	0	0	0	0	0	0	1	6107	962	34	4		4	FRMPD2	10	49448466	Silent	SNP	G	TCGA-E9-A247-01A-11D-A167-09	21649636	49448466	86086281	16	71455										
SLC29A3	0	genome.wustl.edu	37	chr10	73111493	73111496	+	Frame_Shift_Del	DEL	CTAC	CTAC	-													0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	actgtcttcagcagcagcatCtacggcatgaccggctcctt							TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	CTAC	CTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	73111493	73111496	CTAC	-	DEL	SLC29A3	ENST00000373189	human	ensembl	69_37n	1	known	frame_shift_del	c.558_561	p.I186fs	0.993:0.988:0.391:0.033	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	22	0	0	14	12	46.15	-	-	-	-	73111496	CTAC	-	73111493	7	5	871	1	0	1	0	1	0	0	0	0	14625	903	32	0	572	0	SLC29A3	10	73111493	Frame_Shift_Del	DEL	CTAC	TCGA-E9-A247-01A-11D-A167-09	23663027	73111493	62423254	17	71456										
OR5M8	0	genome.wustl.edu	37	chr11	56258125	56258125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tgacagctgtcagatgggagCcacaggtagaaaaagctttt	12	7	1	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	11	56258125	56258125	C	A	SNP	OR5M8	ENST00000327216	human	ensembl	69_37n	-1	known	missense	c.722	p.G241V	0.094	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371	29	0	0	21	4	16	-	-	-	A	56258125	C	A	56258125	3	1	871	1	0	0	0	0	1	0	0	0	11249	739	26	4	217	4	OR5M8	11	56258125	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		56258125	78748391	18	71457										
C11orf70	0	genome.wustl.edu	37	chr11	101951992	101951992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	aaatacagattacctcttctGtctttaaagtttcagcttat	4	8	4	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	11	101951992	101951992	G	A	SNP	C11orf70	ENST00000434758	human	ensembl	69_37n	1	known	missense	c.655	p.V219I	0.941	NULL	NULL	-	no_errors	C11orf70	HGNC	ENSG00000137691	69	0	0	11	16	59.26	-	-	-	A	101951992	G	A	101951992	3	1	871	1	0	0	0	0	1	0	0	0	1670	1377	48	4	559	4	C11orf70	11	101951992	Missense_Mutation	SNP	G	TCGA-E9-A247-01A-11D-A167-09	45693867	101951992	33054524	19	71458										
ABCC9	0	genome.wustl.edu	37	chr12	22086768	22086768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	gacatgcacaaacaggagagCgaatgtaagaatccatctca	9	9	1	2			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	12	22086768	22086768	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.232	p.A78T	0.993	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	61	0	0	44	29	39.73	-	-	-	T	22086768	C	T	22086768	3	4	871	1	0	0	0	0	1	0	0	0	59	768	27	1	4707	1	ABCC9	12	22086768	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		22086768	111765127	20	71459										
POLE	0	genome.wustl.edu	37	chr12	133250274	133250274	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	atgactgcccacaggaaggtAactgtccctcttcacccacc	7	16	2	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	12	133250274	133250274	A	G	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	missense	c.1279	p.Y427H	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	33	0	0	19	9	32.14	-	-	-	G	133250274	A	G	133250274	3	3	871	1	0	0	0	0	1	0	0	0	12270	362	13	5	5762	5	POLE	12	133250274	Missense_Mutation	SNP	A	TCGA-E9-A247-01A-11D-A167-09	111163506	133250274	601621	21	71460										
FREM2	0	genome.wustl.edu	37	chr13	39261493	39261493	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	accgggaccatgcactcagcCgggactcccgggttatcctc	11	16	1	0			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	13	39261493	39261493	C	G	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	silent	c.12	p.A4	0.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	15	0	0	7	7	50	-	-	-	G	39261493	C	G	39261493	2	3	871	1	0	0	0	0	0	0	0	1	6094	639	23	3		3	FREM2	13	39261493	Silent	SNP	C	TCGA-E9-A247-01A-11D-A167-09		39261493	75908385	22	71461										
INSM2	0	genome.wustl.edu	37	chr14	36005145	36005145	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tgctgctgcagatgccactgCggcctggctgctgagggacg	16	12	0	2			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	14	36005145	36005145	C	A	SNP	INSM2	ENST00000307169	human	ensembl	69_37n	1	known	silent	c.1687	p.R563	0.992	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348	12	0	0	6	7	53.85	-	-	-	A	36005145	C	A	36005145	2	1	871	1	0	0	0	0	0	0	0	1	7826	759	27	3		3	INSM2	14	36005145	Silent	SNP	C	TCGA-E9-A247-01A-11D-A167-09		36005145	71344395	23	71462										
ERI2	0	genome.wustl.edu	37	chr16	20802184	20802184	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	agaaatacccaaattcttgcTgaagaaaagcatgctggtcc	8	9	1	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	16	20802184	20802184	T	G	SNP	ERI2	ENST00000300005	human	ensembl	69_37n	-1	known	missense	c.803	p.Q268P	0.018	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI2	HGNC	ENSG00000196678	34	0	0	45	8	15.09	-	-	-	G	20802184	T	G	20802184	3	3	871	1	0	0	0	0	1	0	0	0	5265	1580	55	5	195	5	ERI2	16	20802184	Missense_Mutation	SNP	T	TCGA-E9-A247-01A-11D-A167-09		20802184	69552569	24	71463										
ABCC3	0	genome.wustl.edu	37	chr17	48755286	48755286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	caaccagagaagctgctaccCctacatcatctccaaccggt	6	16	2	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	17	48755286	48755286	C	G	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.3560	p.P1187R	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	30	0	0	27	6	18.18	-	-	-	G	48755286	C	G	48755286	3	3	871	1	0	0	0	0	1	0	0	0	54	623	22	4	3738	4	ABCC3	17	48755286	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		48755286	32439924	25	71464										
RTTN	0	genome.wustl.edu	37	chr18	67684825	67684825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	atgatatattcaggagtaacTtcaaccaaagaatagtcaga	7	6	3	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	18	67684825	67684825	T	C	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.6239	p.K2080R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	57	0	0	48	17	25.76	-	-	-	C	67684825	T	C	67684825	3	2	871	1	0	0	0	0	1	0	0	0	13823	1609	56	5	457	5	RTTN	18	67684825	Missense_Mutation	SNP	T	TCGA-E9-A247-01A-11D-A167-09		67684825	10392423	26	71465										
ZNF69	0	genome.wustl.edu	37	chr19	12016108	12016108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tagacatgaaaggattcacaCgggagagaaggcttatcaat	11	6	2	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	12016108	12016108	C	T	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	1	known	missense	c.896	p.T299M	0.992	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	65	0	0	35	15	30	-	-	-	T	12016108	C	T	12016108	3	4	871	1	0	0	0	0	1	0	0	0	18191	551	19	1		1	ZNF69	19	12016108	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		12016108	47112875	27	71466										
PPFIA3	0	genome.wustl.edu	37	chr19	49632226	49632226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	ggaggtagaagtgctcaaagCtctaaagtctctcttcgagc	11	9	4	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	49632226	49632226	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	missense	c.464	p.A155V	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	29	0	0	17	8	32	-	-	-	T	49632226	C	T	49632226	3	4	871	1	0	0	0	0	1	0	0	0	12384	797	28	4	474	4	PPFIA3	19	49632226	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09	37616118	49632226	9496757	28	71467										
KCNS1	0	genome.wustl.edu	37	chr20	43723698	43723698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	cctccagagccttctggcgcCggtagaagtgggagaacttg	14	11	1	3			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	20	43723698	43723698	C	T	SNP	KCNS1	ENST00000306117	human	ensembl	69_37n	-1	known	missense	c.1394	p.R465Q	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNS1	HGNC	ENSG00000124134	35	0	0	25	5	16.67	-	-	-	T	43723698	C	T	43723698	3	4	871	1	0	0	0	0	1	0	0	0	8142	652	23	1	190	1	KCNS1	20	43723698	Missense_Mutation	SNP	C	TCGA-E9-A247-01A-11D-A167-09		43723698	19301822	29	71468										
POF1B	0	genome.wustl.edu	37	chrX	84634256	84634256	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	agcacttcccgtgagttgaaGgggtccaaggcctgcaccac	12	13	0	2			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	84634256	84634256	G	T	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	silent	c.204	p.P68	0.931	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	47	0	0	19	11	36.67	-	-	-	T	84634256	G	T	84634256	2	4	871	1	0	0	0	0	0	0	0	1	12256	987	35	4		4	POF1B	23	84634256	Silent	SNP	G	TCGA-E9-A247-01A-11D-A167-09		84634256	70636304	30	71469										
SYTL4	0	genome.wustl.edu	37	chrX	99942108	99942108	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.032258064516129	1	1	0.292788461538462	0.975961538461538	0	1	1	0	tcagcataggccagctgatgGcactccttcacatggacaac	9	13	2	1			TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	99942108	99942108	G	A	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	silent	c.1146	p.C382	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	38	0	0	13	6	31.58	-	-	-	A	99942108	G	A	99942108	2	1	871	1	0	0	0	0	0	0	0	1	15577	1195	42	4		4	SYTL4	23	99942108	Silent	SNP	G	TCGA-E9-A247-01A-11D-A167-09	15307852	99942108	55328452	31	71470										
LRBA	0	genome.wustl.edu	37	chr4	151935687	151935687	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	cccctgatggggagccctggTttcagagacaatgcaccccc	11	15	1	2			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	4	151935687	151935687	T	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	silent	c.108	p.K36	0.917	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	39	0	0	40	6	13.04	-	-	-	C	151935687	T	C	151935687	2	2	872	1	0	0	0	0	0	0	0	1	8997	1722	60	5		5	LRBA	4	151935687	Silent	SNP	T	TCGA-E9-A248-01A-11D-A167-09		151935687	39218589	1	71471										
ZBTB9	0	genome.wustl.edu	37	chr6	33423544	33423544	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	aggaggaggaagatgatgatGatgaggaccaggggtcagcc	18	5	1	5			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	6	33423544	33423544	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	1	known	missense	c.667	p.D223N	0.807	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	20	0	0	25	7	21.88	-	-	-	A	33423544	G	A	33423544	3	1	872	1	0	0	0	0	1	0	0	0	17654	1290	45	2	669	2	ZBTB9	6	33423544	Missense_Mutation	SNP	G	TCGA-E9-A248-01A-11D-A167-09		33423544	137691523	2	71472										
PLOD3	0	genome.wustl.edu	37	chr7	100856163	100856163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	tccggtcctggttgcagaagCcacagcctccctcaggagtc	11	15	1	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	7	100856163	100856163	C	G	SNP	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	missense	c.839	p.G280A	0.980	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	16	0	0	17	6	26.09	-	-	-	G	100856163	C	G	100856163	3	3	872	1	0	0	0	0	1	0	0	0	12177	739	26	4	1425	4	PLOD3	7	100856163	Missense_Mutation	SNP	C	TCGA-E9-A248-01A-11D-A167-09		100856163	58282500	3	71473										
ODF2	0	genome.wustl.edu	37	chr9	131221854	131221854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	gcctgggtgcaggtttccatCgtgtgggaagaacggagtaa	16	7	0	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	9	131221854	131221854	C	T	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	1	known	missense	c.41	p.S14L	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	41	0	0	57	9	13.64	-	-	-	T	131221854	C	T	131221854	3	4	872	1	0	0	0	0	1	0	0	0	10900	893	31	1	47	1	ODF2	9	131221854	Missense_Mutation	SNP	C	TCGA-E9-A248-01A-11D-A167-09		131221854	9991577	4	71474										
EPC1	0	genome.wustl.edu	37	chr10	32558007	32558007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	gaagctacgtcacctccatcGctactgtgttgtctgctatg	9	12	2	0			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	10	32558007	32558007	G	A	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.2495	p.A832V	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	80	0	0	121	19	13.57	-	-	-	A	32558007	G	A	32558007	3	1	872	1	0	0	0	0	1	0	0	0	5197	1087	38	1	19	1	EPC1	10	32558007	Missense_Mutation	SNP	G	TCGA-E9-A248-01A-11D-A167-09		32558007	102976740	5	71475										
IDE	0	genome.wustl.edu	37	chr10	94234712	94234712	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	ccggaaattgttaagagatcGcatatactagtgaaagagac	10	6	0	3			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	10	94234712	94234712	G	A	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	nonsense	c.2002	p.R668*	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	45	0	0	46	6	11.54	-	-	-	A	94234712	G	A	94234712	4	1	872	1	0	0	0	0	0	1	0	0	7547	1095	38	1	1093	1	IDE	10	94234712	Nonsense_Mutation	SNP	G	TCGA-E9-A248-01A-11D-A167-09	61676705	94234712	41300035	6	71476										
MPEG1	0	genome.wustl.edu	37	chr11	58979086	58979086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	tctgggataacaggtgcaccGgggagtagccagaggggcag	18	8	1	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	11	58979086	58979086	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	missense	c.1253	p.P418L	0.066	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	42	0	0	42	7	14.29	-	-	-	A	58979086	G	A	58979086	3	1	872	1	0	0	0	0	1	0	0	0	9795	1116	39	1	901	1	MPEG1	11	58979086	Missense_Mutation	SNP	G	TCGA-E9-A248-01A-11D-A167-09		58979086	76027430	7	71477										
ATP11A	0	genome.wustl.edu	37	chr13	113512220	113512220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	tgtcagcatgattctggaagCgcacgtgggcataggtgagc	15	8	2	2			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	13	113512220	113512220	C	T	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	1	known	missense	c.2507	p.A836V	1.000	superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	59	0	0	78	32	29.09	-	-	-	T	113512220	C	T	113512220	3	4	872	1	0	0	0	0	1	0	0	0	1123	768	27	1	2589	1	ATP11A	13	113512220	Missense_Mutation	SNP	C	TCGA-E9-A248-01A-11D-A167-09		113512220	1657658	8	71478										
NIN	0	genome.wustl.edu	37	chr14	51243678	51243678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	gaggcttacctctccatccaCattctgtaaaccatactgct	5	14	2	0			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	14	51243678	51243678	C	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.655	p.V219L	0.001	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	31	0	0	45	11	19.64	-	-	-	A	51243678	C	A	51243678	3	1	872	1	0	0	0	0	1	0	0	0	10489	478	17	4	5994	4	NIN	14	51243678	Missense_Mutation	SNP	C	TCGA-E9-A248-01A-11D-A167-09		51243678	56105862	9	71479										
B2M	0	genome.wustl.edu	37	chr15	45007801	45007801	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	cagcaaggactggtctttctAtctcttgtactacactgaat	7	10	3	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	15	45007801	45007801	A	T	SNP	B2M	ENST00000544417	human	ensembl	69_37n	1	known	missense	c.248	p.Y83F	0.989	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	B2M	HGNC	ENSG00000166710	76	0	0	82	20	19.61	-	-	-	T	45007801	A	T	45007801	3	4	872	1	0	0	0	0	1	0	0	0	1248	449	16	5	254	5	B2M	15	45007801	Missense_Mutation	SNP	A	TCGA-E9-A248-01A-11D-A167-09		45007801	57523591	10	71480										
TP53	0	genome.wustl.edu	37	chr17	7579344	7579344	+	Frame_Shift_Del	DEL	G	G	-													0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	agacttggctgtcccagaatGcaagaagcccagacggaaac							TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	7579344	7579344	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.343	p.H115fs	0.938	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	19	0	0	21	7	24.14	-	-	-	-	7579344	G	-	7579344	7	5	872	1	0	1	0	1	0	0	0	0	16477	1319	46	0	959	0	TP53	17	7579344	Frame_Shift_Del	DEL	G	TCGA-E9-A248-01A-11D-A167-09		7579344	73615866	11	71481										
IFI35	0	genome.wustl.edu	37	chr17	41165618	41165618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	aagactaggaacggaggtggCgatgtggacgttcgggagct	18	6	0	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	41165618	41165618	C	T	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	1	known	silent	c.507	p.G169	0.097	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	70	0	0	95	15	13.64	-	-	-	T	41165618	C	T	41165618	2	4	872	1	0	0	0	0	0	0	0	1	7570	755	27	1		1	IFI35	17	41165618	Silent	SNP	C	TCGA-E9-A248-01A-11D-A167-09	33586274	41165618	40029592	12	71482										
LUC7L3	0	genome.wustl.edu	37	chr17	48818484	48818484	+	Frame_Shift_Del	DEL	C	C	-													0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	tatgagaagagctctcgtttCatgaaagttggctatgagag							TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	48818484	48818484	C	-	DEL	LUC7L3	ENST00000240304	human	ensembl	69_37n	1	known	frame_shift_del	c.228	p.F76fs	0.997	pfam_LUC7-rel	pfam_LUC7-rel	-	no_errors	LUC7L3	HGNC	ENSG00000108848	53	0	0	69	22	24.18	-	-	-	-	48818484	C	-	48818484	7	5	872	1	0	1	0	1	0	0	0	0	9150	825	29	0	242	0	LUC7L3	17	48818484	Frame_Shift_Del	DEL	C	TCGA-E9-A248-01A-11D-A167-09	7652866	48818484	32376726	13	71483										
C3	0	genome.wustl.edu	37	chr19	6712375	6712375	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	ctcgccctggactgccacggGgactcggtaggctggagagc	16	13	0	1			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	19	6712375	6712375	G	C	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.1162	p.P388A	0.376	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	36	0	0	56	11	16.42	-	-	-	C	6712375	G	C	6712375	3	2	872	1	0	0	0	0	1	0	0	0	2224	1232	43	4	3953	4	C3	19	6712375	Missense_Mutation	SNP	G	TCGA-E9-A248-01A-11D-A167-09		6712375	52416608	14	71484										
PLCB4	0	genome.wustl.edu	37	chr20	9417764	9417764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.956087681883366	0.857142857142857	0	1.07142857142857	1	1	0	tgagctcagaccaaccaccaCggctgccctggcctctggtg	11	16	2	2			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	20	9417764	9417764	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	1	known	missense	c.2693	p.T898M	0.996	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	18	0	0	43	10	18.87	-	-	-	T	9417764	C	T	9417764	3	4	872	1	0	0	0	0	1	0	0	0	12104	536	19	1	2835	1	PLCB4	20	9417764	Missense_Mutation	SNP	C	TCGA-E9-A248-01A-11D-A167-09		9417764	53607756	15	71485										
EPHB2	0	genome.wustl.edu	37	chr1	23111511	23111511	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	ggcgagtggctggtgcccatCgggcgctgcatgtgcaaagc	17	11	0	0			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	1	23111511	23111511	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	1	known	silent	c.753	p.I251	0.965	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	17	0	0	4	5	55.56	-	-	-	T	23111511	C	T	23111511	2	4	873	1	0	0	0	0	0	0	0	1	5212	874	31	1		1	EPHB2	1	23111511	Silent	SNP	C	TCGA-E9-A249-01A-11D-A167-09		23111511	226139110	1	71486										
CSMD2	0	genome.wustl.edu	37	chr1	34052731	34052731	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	gtgacgacttcggcgttgggGaggatggtgggaggagggca	22	5	0	1			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	1	34052731	34052731	G	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.6894	p.L2298	0.985	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	53	0	0	52	11	17.46	-	-	-	T	34052731	G	T	34052731	2	4	873	1	0	0	0	0	0	0	0	1	3977	1161	41	2		2	CSMD2	1	34052731	Silent	SNP	G	TCGA-E9-A249-01A-11D-A167-09	10941220	34052731	215197890	2	71487										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0	52	25	32.47	-	-	-	A	178936091	G	A	178936091	3	1	873	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-E9-A249-01A-11D-A167-09		178936091	19086339	3	71488										
WDR19	0	genome.wustl.edu	37	chr4	39236448	39236448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	gcaaagcatttggccccagaCcagataccttttatatcaaa	6	11	1	2			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	4	39236448	39236448	C	A	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	1	known	missense	c.2316	p.D772E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	58	0	0	46	7	13.21	-	-	-	A	39236448	C	A	39236448	3	1	873	1	0	0	0	0	1	0	0	0	17376	506	18	4	2394	4	WDR19	4	39236448	Missense_Mutation	SNP	C	TCGA-E9-A249-01A-11D-A167-09		39236448	151917828	4	71489										
CYP11B2	0	genome.wustl.edu	37	chr8	143994109	143994109	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	tcgggaacaaggcggcattgCgacccagcgagtagaggaaa	15	9	0	1			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	8	143994109	143994109	C	T	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1235	p.R412H	0.811	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	31	0	0	26	19	42.22	-	-	-	T	143994109	C	T	143994109	3	4	873	1	0	0	0	0	1	0	0	0	4177	768	27	1	284	1	CYP11B2	8	143994109	Missense_Mutation	SNP	C	TCGA-E9-A249-01A-11D-A167-09		143994109	2369913	5	71490										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	40	0	0	33	15	31.25	-	-	-	-	8111434	CA	-	8111433	8	5	873	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-E9-A249-01A-11D-A167-09		8111433	127423314	6	71491										
USP54	0	genome.wustl.edu	37	chr10	75279643	75279643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	tgattgctgctgctgcatgcGatcctgcaggctccgtgctt	12	12	0	1			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	10	75279643	75279643	G	A	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.2590	p.R864C	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	46	0	0	34	12	26.09	-	-	-	A	75279643	G	A	75279643	3	1	873	1	0	0	0	0	1	0	0	0	17182	1058	37	1	2488	1	USP54	10	75279643	Missense_Mutation	SNP	G	TCGA-E9-A249-01A-11D-A167-09	67168210	75279643	60255104	7	71492										
OR2D3	0	genome.wustl.edu	37	chr11	6942870	6942870	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	agacacttacagcacagaaaTggccatcttttcaatgggcg	9	10	2	2			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	6942870	6942870	T	A	SNP	OR2D3	ENST00000317834	human	ensembl	69_37n	1	known	missense	c.638	p.M213K	0.795	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2D3	HGNC	ENSG00000178358	66	0	0	73	19	20.65	-	-	-	A	6942870	T	A	6942870	3	1	873	1	0	0	0	0	1	0	0	0	11068	1464	51	5	640	5	OR2D3	11	6942870	Missense_Mutation	SNP	T	TCGA-E9-A249-01A-11D-A167-09		6942870	128063646	8	71493										
KCNJ11	0	genome.wustl.edu	37	chr11	17408781	17408781	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	gtttccaccacgccttccagGatgacgatgatctcgaggtc	10	13	1	2			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	17408781	17408781	G	T	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	silent	c.858	p.I286	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	36	0	0	36	26	41.94	-	-	-	T	17408781	G	T	17408781	2	4	873	1	0	0	0	0	0	0	0	1	8099	1164	41	2		2	KCNJ11	11	17408781	Silent	SNP	G	TCGA-E9-A249-01A-11D-A167-09	10465911	17408781	117597735	9	71494										
TNKS1BP1	0	genome.wustl.edu	37	chr11	57076056	57076056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	gctgccattgtgcctcaggcCgggctctgggcactggctca	14	14	3	0			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	57076056	57076056	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.4129	p.G1377S	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	28	0	0	17	13	43.33	-	-	-	T	57076056	C	T	57076056	3	4	873	1	0	0	0	0	1	0	0	0	16415	652	23	1	1084	1	TNKS1BP1	11	57076056	Missense_Mutation	SNP	C	TCGA-E9-A249-01A-11D-A167-09	39667275	57076056	77930460	10	71495										
HYOU1	0	genome.wustl.edu	37	chr11	118919513	118919513	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	cgatctcctctaccattcgcCgcttcctggcgggcttctgc	9	17	3	0			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	118919513	118919513	C	G	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.2078	p.R693P	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	57	0	0	34	24	41.38	-	-	-	G	118919513	C	G	118919513	3	3	873	1	0	0	0	0	1	0	0	0	7524	652	23	3	957	3	HYOU1	11	118919513	Missense_Mutation	SNP	C	TCGA-E9-A249-01A-11D-A167-09	61843457	118919513	16087003	11	71496										
IFT140	0	genome.wustl.edu	37	chr16	1575899	1575899	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	cgcactcactaactgagggcCcggctgcagtcggcgctggc	14	15	1	1			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	16	1575899	1575899	C	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.2757	p.R919	0.961	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	9	0	0	12	13	52	-	-	-	A	1575899	C	A	1575899	2	1	873	1	0	0	0	0	0	0	0	1	7610	610	22	4		4	IFT140	16	1575899	Silent	SNP	C	TCGA-E9-A249-01A-11D-A167-09		1575899	88778854	12	71497										
CBFB	0	genome.wustl.edu	37	chr16	67063371	67063371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	acgaggagttttttaggaagCtgagccgcgagtgtgaggtg	17	5	0	2			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	16	67063371	67063371	C	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.61	p.L21V	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	16	0	0	1	5	83.33	-	-	-	G	67063371	C	G	67063371	3	3	873	1	0	0	0	0	1	0	0	0	2724	796	28	4	63	4	CBFB	16	67063371	Missense_Mutation	SNP	C	TCGA-E9-A249-01A-11D-A167-09	65487472	67063371	23291382	13	71498										
MXRA5	0	genome.wustl.edu	37	chrX	3229027	3229027	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	tgtcagaacgctgggctttcTgaataaggagagtgccatct	12	8	3	3			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	X	3229027	3229027	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.7217	p.Q2406R	0.945	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	23	0	0	16	9	36	-	-	-	C	3229027	T	C	3229027	3	2	873	1	0	0	0	0	1	0	0	0	10075	1580	55	5	1273	5	MXRA5	23	3229027	Missense_Mutation	SNP	T	TCGA-E9-A249-01A-11D-A167-09		3229027	152041533	14	71499										
LDOC1	0	genome.wustl.edu	37	chrX	140271018	140271018	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	1	0.884573867541399	1.22556390977444	0	1.71578947368421	1	1	0	tgcacgataaactcggggagCcgggagctctcgccattaaa	12	11	1	0			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	X	140271018	140271018	C	A	SNP	LDOC1	ENST00000370526	human	ensembl	69_37n	-1	known	silent	c.189	p.R63	0.996	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195	25	0	0	28	13	31.71	-	-	-	A	140271018	C	A	140271018	2	1	873	1	0	0	0	0	0	0	0	1	8763	726	26	4		4	LDOC1	23	140271018	Silent	SNP	C	TCGA-E9-A249-01A-11D-A167-09	137041991	140271018	14999542	15	71500										
C1orf65	0	genome.wustl.edu	37	chr1	223567541	223567541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgcggagcccgcacacccagGtcctgaagagcaagctggaa	13	13	0	2			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	1	223567541	223567541	G	A	SNP	C1orf65	ENST00000366875	human	ensembl	69_37n	1	known	missense	c.724	p.V242I	0.000	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	10	0	0	23	9	28.12	-	-	-	A	223567541	G	A	223567541	3	1	874	1	0	0	0	0	1	0	0	0	2075	1261	44	4	726	4	C1orf65	1	223567541	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		223567541	25683080	1	71501										
CCDC50	0	genome.wustl.edu	37	chr3	191047486	191047486	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggctgaagtcagcatcgaccAgtccaagctgcctggagtca	12	12	2	1			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	3	191047486	191047486	A	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	1	known	missense	c.23	p.Q8L	1.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	16	0	0	10	6	37.5	-	-	-	T	191047486	A	T	191047486	3	4	874	1	0	0	0	0	1	0	0	0	2847	188	7	5	25	5	CCDC50	3	191047486	Missense_Mutation	SNP	A	TCGA-E9-A24A-01A-11D-A167-09		191047486	6974944	2	71502										
SLIT2	0	genome.wustl.edu	37	chr4	20541090	20541090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagaagcaatcgaataacctGtgtggggaatgacagtttca	12	6	1	2			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	20541090	20541090	G	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.1859	p.C620F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	148	0	0	80	29	26.61	-	-	-	T	20541090	G	T	20541090	3	4	874	1	0	0	0	0	1	0	0	0	14829	1377	48	4	1933	4	SLIT2	4	20541090	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		20541090	170613186	3	71503										
DMP1	0	genome.wustl.edu	37	chr4	88584083	88584083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	aggaagacagtgactccagcGaggaggacagctcgcacaca	13	11	0	2			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	88584083	88584083	G	A	SNP	DMP1	ENST00000339673	human	ensembl	69_37n	1	known	missense	c.1153	p.E385K	0.529	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592	53	0	0	33	10	23.26	-	-	-	A	88584083	G	A	88584083	3	1	874	1	0	0	0	0	1	0	0	0	4619	1059	37	1	1171	1	DMP1	4	88584083	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09	68042993	88584083	102570193	4	71504										
UBE2D3	0	genome.wustl.edu	37	chr4	103730974	103730974	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tccccaactggacctgcagaAcattgtgctggagggtcacg	12	12	1	1			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	103730974	103730974	A	C	SNP	UBE2D3	ENST00000357194	human	ensembl	69_37n	-1	known	missense	c.69	p.C23W	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D3	HGNC	ENSG00000109332	75	0	0	51	30	37.04	-	-	-	C	103730974	A	C	103730974	3	2	874	1	0	0	0	0	1	0	0	0	16947	41	2	5	457	5	UBE2D3	4	103730974	Missense_Mutation	SNP	A	TCGA-E9-A24A-01A-11D-A167-09	15146891	103730974	87423302	5	71505										
PCDHGA5	0	genome.wustl.edu	37	chr5	140744030	140744030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agctggacaaaggctccttcGtcggcaacatagccaaggac	11	12	0	0			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	5	140744030	140744030	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	1	known	missense	c.133	p.V45I	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	40	0	0	20	14	41.18	-	-	-	A	140744030	G	A	140744030	3	1	874	1	0	0	0	0	1	0	0	0	11630	1145	40	1	135	1	PCDHGA5	5	140744030	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		140744030	40171230	6	71506										
OR5V1	0	genome.wustl.edu	37	chr6	29323445	29323445	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggggggatgtcacagaagaaGtaattaatctgattgttgcc	13	5	2	3			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	29323445	29323445	G	T	SNP	OR5V1	ENST00000377151	human	ensembl	69_37n	-1	known	nonsense	c.528	p.Y176*	0.559	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729	23	0	0	24	9	27.27	-	-	-	T	29323445	G	T	29323445	4	4	874	1	0	0	0	0	0	1	0	0	11257	1024	36	4	440	4	OR5V1	6	29323445	Nonsense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		29323445	141791622	7	71507										
LCA5	0	genome.wustl.edu	37	chr6	80222980	80222980	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aactctgctgaaactagtttCtttgccaaatcatctcgttc	5	11	4	1			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	80222980	80222980	C	A	SNP	LCA5	ENST00000369846	human	ensembl	69_37n	-1	known	missense	c.669	p.K223N	1.000	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338	100	0	0	73	32	30.48	-	-	-	A	80222980	C	A	80222980	3	1	874	1	0	0	0	0	1	0	0	0	8710	912	32	2	1448	2	LCA5	6	80222980	Missense_Mutation	SNP	C	TCGA-E9-A24A-01A-11D-A167-09	50899535	80222980	90892087	8	71508										
SLC2A12	0	genome.wustl.edu	37	chr6	134323224	134323225	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	NA	0	1	1	0	aaagcagggatgctagactcINSatgattgtatatataaagca							TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	134323224	134323225	-	A	INS	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1611_1610	p.M537fs	1.000:1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	80	0	0	51	25	32.89	-	-	-	A	134323225	-	A	134323224	7	5	874	1	0	1	1	0	0	0	0	0	14630	826	29	0	250	0	SLC2A12	6	134323224	Frame_Shift_Ins	INS	-	TCGA-E9-A24A-01A-11D-A167-09	54100244	134323224	36791843	9	71509										
NDUFB9	0	genome.wustl.edu	37	chr8	125555378	125555378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagagcccggtttgaagaacAtaagaatgaaaaggatatgg	13	4	0	5			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	8	125555378	125555378	A	G	SNP	NDUFB9	ENST00000276689	human	ensembl	69_37n	1	known	missense	c.152	p.H51R	1.000	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684	57	0	0	42	17	28.81	-	-	-	G	125555378	A	G	125555378	3	3	874	1	0	0	0	0	1	0	0	0	10360	217	8	5	158	5	NDUFB9	8	125555378	Missense_Mutation	SNP	A	TCGA-E9-A24A-01A-11D-A167-09		125555378	20808644	10	71510										
CTNNAL1	0	genome.wustl.edu	37	chr9	111734985	111734985	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgctctttctgttcagagagTttacaggcatattcagccaa	8	9	4	1			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	111734985	111734985	T	A	SNP	CTNNAL1	ENST00000325551	human	ensembl	69_37n	-1	known	missense	c.1317	p.K439N	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	79	0	0	64	28	30.43	-	-	-	A	111734985	T	A	111734985	3	1	874	1	0	0	0	0	1	0	0	0	4047	1722	60	5	931	5	CTNNAL1	9	111734985	Missense_Mutation	SNP	T	TCGA-E9-A24A-01A-11D-A167-09		111734985	29478446	11	71511										
HSPA5	0	genome.wustl.edu	37	chr9	128001333	128001333	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	agaagacagggcccgtttggCcttttctacctcgcgccgga							TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	128001333	128001333	C	-	DEL	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	frame_shift_del	c.883	p.A295fs	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	62	0	0	50	15	22.39	-	-	-	-	128001333	C	-	128001333	7	5	874	1	0	1	0	1	0	0	0	0	7467	739	26	0	1097	0	HSPA5	9	128001333	Frame_Shift_Del	DEL	C	TCGA-E9-A24A-01A-11D-A167-09	16266348	128001333	13212098	12	71512										
MAMDC4	0	genome.wustl.edu	37	chr9	139753216	139753216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgtgctgggccccgggggccGggccgcctggctgcgcagcg	20	16	0	0			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	139753216	139753216	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	1	known	missense	c.3104	p.R1035Q	0.149	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	28	0	0	16	6	27.27	-	-	-	A	139753216	G	A	139753216	3	1	874	1	0	0	0	0	1	0	0	0	9275	1116	39	1	2957	1	MAMDC4	9	139753216	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09	11751883	139753216	1460215	13	71513										
MYO16	0	genome.wustl.edu	37	chr13	109704802	109704802	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcaattattggagaaaacaaGaattatctagaacttagtaa	6	4	2	3			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	13	109704802	109704802	G	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	missense	c.2961	p.K987N	0.997	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	62	0	0	43	10	18.87	-	-	-	T	109704802	G	T	109704802	3	4	874	1	0	0	0	0	1	0	0	0	10136	933	33	2	3055	2	MYO16	13	109704802	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		109704802	5465076	14	71514										
CCPG1	0	genome.wustl.edu	37	chr15	55677882	55677882	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctcacagctgtcagtgggggTcacagaattcaacatttcta	9	10	5	1			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	15	55677882	55677882	T	A	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.91	p.T31S	0.756	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	51	0	0	41	15	26.79	-	-	-	A	55677882	T	A	55677882	3	1	874	1	0	0	0	0	1	0	0	0	2967	1667	58	5	2206	5	CCPG1	15	55677882	Missense_Mutation	SNP	T	TCGA-E9-A24A-01A-11D-A167-09		55677882	46853510	15	71515										
DNAH9	0	genome.wustl.edu	37	chr17	11603195	11603195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgagccctgtgactgcagcGggcaggtaacacagtagccc	14	12	0	2			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	17	11603195	11603195	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.5020	p.G1674R	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	40	0	0	28	15	34.88	-	-	-	A	11603195	G	A	11603195	3	1	874	1	0	0	0	0	1	0	0	0	4643	1116	39	1	5110	1	DNAH9	17	11603195	Missense_Mutation	SNP	G	TCGA-E9-A24A-01A-11D-A167-09		11603195	69592015	16	71516										
MUM1	0	genome.wustl.edu	37	chr19	1362249	1362249	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	taatatcacattattggcagAgtgccagtcttccgaagagt	9	8	2	2			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	19	1362249	1362249	A	G	SNP	MUM1	ENST00000344663	human	ensembl	69_37n	1	known	missense	c.1115	p.E372G	0.039	NULL	pfam_PWWP	-	no_errors	MUM1	HGNC	ENSG00000160953	39	0	0	21	8	27.59	-	-	-	G	1362249	A	G	1362249	3	3	874	1	0	0	0	0	1	0	0	0	10057	318	11	5	1133	5	MUM1	19	1362249	Missense_Mutation	SNP	A	TCGA-E9-A24A-01A-11D-A167-09		1362249	57766734	17	71517										
PLXNB3	0	genome.wustl.edu	37	chrX	153043072	153043072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gccgtcaagtacctgtttgaCcttctggatgagctagcaga	11	10	2	3			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	X	153043072	153043072	C	A	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	missense	c.5259	p.D1753E	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	64	0	0	28	12	30	-	-	-	A	153043072	C	A	153043072	3	1	874	1	0	0	0	0	1	0	0	0	12199	506	18	4	5426	4	PLXNB3	23	153043072	Missense_Mutation	SNP	C	TCGA-E9-A24A-01A-11D-A167-09		153043072	2227488	18	71518										
PRAMEF12	0	genome.wustl.edu	37	chr1	12837483	12837483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cgccctggagaacctgctgcGccacaccgtcgggctgagca	13	16	0	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	12837483	12837483	G	A	SNP	PRAMEF12	ENST00000357726	human	ensembl	69_37n	1	known	missense	c.1193	p.R398H	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726	85	0	0	53	28	34.15	-	-	-	A	12837483	G	A	12837483	3	1	875	1	0	0	0	0	1	0	0	0	12505	1087	38	1	1203	1	PRAMEF12	1	12837483	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		12837483	236413138	1	71519										
L1TD1	0	genome.wustl.edu	37	chr1	62673207	62673207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tgcaaagccttagaaaatttGccagccaaaaatcttctgtg	7	9	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	62673207	62673207	G	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	1	known	missense	c.907	p.A303S	0.003	pfam_Transposase_22	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	30	0	0	26	11	29.73	-	-	-	T	62673207	G	T	62673207	3	4	875	1	0	0	0	0	1	0	0	0	8643	1319	46	4	909	4	L1TD1	1	62673207	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	49835724	62673207	186577414	2	71520										
SEC16B	0	genome.wustl.edu	37	chr1	177929522	177929522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tcatctcctcttgctcttcgGaatcattaagaataacctgg	6	11	5	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	177929522	177929522	G	T	SNP	SEC16B	ENST00000308284	human	ensembl	69_37n	-1	known	missense	c.953	p.S318Y	0.650	NULL	NULL	-	no_errors	SEC16B	Clone_based_vega_gene	ENSG00000120341	43	0	0	59	14	19.18	-	-	-	T	177929522	G	T	177929522	3	4	875	1	0	0	0	0	1	0	0	0	14075	1174	41	2	2305	2	SEC16B	1	177929522	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	115256315	177929522	71321099	3	71521										
KIF21B	0	genome.wustl.edu	37	chr1	200944041	200944041	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cttgtgcgcattggggatttGctgtgagaggatcagggctg	17	6	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	200944041	200944041	G	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.4615	p.Q1539K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	37	0	0	35	21	37.5	-	-	-	T	200944041	G	T	200944041	3	4	875	1	0	0	0	0	1	0	0	0	8341	1333	46	4	306	4	KIF21B	1	200944041	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	23014519	200944041	48306580	4	71522										
CR1	0	genome.wustl.edu	37	chr1	207791576	207791576	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cagggaatctggagccaattGgatcattattgcaaaggtga	12	6	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	207791576	207791576	G	A	SNP	CR1	ENST00000529814	human	ensembl	69_37n	1	novel	nonsense	c.1568	p.W523*	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CR1	HGNC	ENSG00000203710	89	0	0	108	13	10.74	-	-	-	A	207791576	G	A	207791576	4	1	875	1	0	0	0	0	0	1	0	0	3870	1339	47	4	7216	4	CR1	1	207791576	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	6847535	207791576	41459045	5	71523										
OBSCN	0	genome.wustl.edu	37	chr1	228482539	228482539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gaggccagagaaggggccacGgccgtgctgcaatgtgagct	17	10	0	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	228482539	228482539	G	A	SNP	OBSCN	ENST00000483539	human	ensembl	69_37n	1	novel	missense	c.3281	p.R1094Q	0.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OBSCN	HGNC	ENSG00000154358	68	0	0	82	31	27.43	-	-	-	A	228482539	G	A	228482539	3	1	875	1	0	0	0	0	1	0	0	0	10885	1103	39	1	11620	1	OBSCN	1	228482539	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	20690963	228482539	20768082	6	71524										
OR2L13	0	genome.wustl.edu	37	chr1	248262934	248262934	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gatggcgtacaacttcctgtCcggccagaaaggcatctcct	10	13	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	248262934	248262934	C	A	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	missense	c.257	p.S86Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	62	0	0	95	17	15.18	-	-	-	A	248262934	C	A	248262934	3	1	875	1	0	0	0	0	1	0	0	0	11079	855	30	2	259	2	OR2L13	1	248262934	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	19780395	248262934	987687	7	71525										
WDR35	0	genome.wustl.edu	37	chr2	20145695	20145695	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cttgctgtcccgtactgtccGttactcgagcatccaagtca	8	14	1	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	20145695	20145695	G	C	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	missense	c.1730	p.T577R	0.231	superfamily_WD40_repeat_dom,pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	77	0	0	82	17	16.83	-	-	-	C	20145695	G	C	20145695	3	2	875	1	0	0	0	0	1	0	0	0	17386	1145	40	3	1863	3	WDR35	2	20145695	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		20145695	223053678	8	71526										
TBC1D8	0	genome.wustl.edu	37	chr2	101650087	101650087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcaattcccgtttcgttctgGaaggcggggtgctctggcag	15	10	2	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	101650087	101650087	G	C	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	missense	c.1737	p.F579L	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	79	0	0	68	12	15	-	-	-	C	101650087	G	C	101650087	3	2	875	1	0	0	0	0	1	0	0	0	15720	1165	41	2	1774	2	TBC1D8	2	101650087	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	81504392	101650087	141549286	9	71527										
SCN9A	0	genome.wustl.edu	37	chr2	167163024	167163024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	acttatacccacttactcgaCatttttggtccagtccggtg	7	12	0	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	167163024	167163024	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	missense	c.466	p.V156I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	95	0	0	97	25	20.33	-	-	-	T	167163024	C	T	167163024	3	4	875	1	0	0	0	0	1	0	0	0	14013	478	17	4	5566	4	SCN9A	2	167163024	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	65512937	167163024	76036349	10	71528										
XIRP2	0	genome.wustl.edu	37	chr2	168104572	168104572	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	aagacacatccaatgtaacaGaaatgaaagtctctgaaaaa	6	7	1	4			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	168104572	168104572	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	nonsense	c.6670	p.E2224*	0.094	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	36	0	0	29	6	17.14	-	-	-	T	168104572	G	T	168104572	4	4	875	1	0	0	0	0	0	1	0	0	17527	943	33	2	6700	2	XIRP2	2	168104572	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	941548	168104572	75094801	11	71529										
TTN	0	genome.wustl.edu	37	chr2	179604866	179604866	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cctcctgcactttctttattGccacgggctctcttttagac	6	14	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	179604866	179604866	G	T	SNP	TTN	ENST00000342175	human	ensembl	69_37n	-1	known	missense	c.12581	p.A4194E	0.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	58	0	0	45	7	13.46	-	-	-	T	179604866	G	T	179604866	3	4	875	1	0	0	0	0	1	0	0	0	16832	1319	46	4	91695	4	TTN	2	179604866	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	11500294	179604866	63594507	12	71530										
IL17RD	0	genome.wustl.edu	37	chr3	57132299	57132299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcaggaataatcaaagtagaCggcgataaacttgctgagcg	12	7	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	57132299	57132299	C	T	SNP	IL17RD	ENST00000296318	human	ensembl	69_37n	-1	known	missense	c.1432	p.V478I	1.000	pfam_SEFIR	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	37	0	0	21	6	22.22	-	-	-	T	57132299	C	T	57132299	3	4	875	1	0	0	0	0	1	0	0	0	7696	536	19	1	795	1	IL17RD	3	57132299	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		57132299	140890131	13	71531										
FOXP1	0	genome.wustl.edu	37	chr3	71027086	71027087	+	Frame_Shift_Del	DEL	AG	AG	-													0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggccttgggtgacgggagtcAggggggcggttggggtcgtt							TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	71027086	71027087	AG	-	DEL	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	frame_shift_del	c.1241_1240	p.L414fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	89	0	0	42	18	26.47	-	-	-	-	71027087	AG	-	71027086	7	5	875	1	0	1	0	1	0	0	0	0	6074	188	7	0	820	0	FOXP1	3	71027086	Frame_Shift_Del	DEL	AG	TCGA-E9-A295-01A-11D-A16D-09	13894787	71027086	126995344	14	71532										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	19	27	58.7	-	-	-	T	178952085	A	T	178952085	3	4	875	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-E9-A295-01A-11D-A16D-09	107924999	178952085	19070345	15	71533										
MUC4	0	genome.wustl.edu	37	chr3	195486130	195486130	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	attgatggagggcgggtactGatctgaaacacaaagaggga	15	5	1	4			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	195486130	195486130	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.14851	p.Q4951K	0.972	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	39	0	0	23	20	46.51	-	-	-	T	195486130	G	T	195486130	3	4	875	1	0	0	0	0	1	0	0	0	10050	1299	45	2	1423	2	MUC4	3	195486130	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	16534045	195486130	2536300	16	71534										
PAK2	0	genome.wustl.edu	37	chr3	196547338	196547338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggcaccagaggtggttacacGgaaagcttatggccctaaag	13	9	0	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	196547338	196547338	G	A	SNP	PAK2	ENST00000327134	human	ensembl	69_37n	1	known	missense	c.1250	p.R417Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK2	HGNC	ENSG00000180370	44	0	0	46	13	22.03	-	-	-	A	196547338	G	A	196547338	3	1	875	1	0	0	0	0	1	0	0	0	11474	1116	39	1	1296	1	PAK2	3	196547338	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	1061208	196547338	1475092	17	71535										
FGG	0	genome.wustl.edu	37	chr4	155533233	155533233	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ttttatcagctgtttgacttCtgatgttttgttttcaactt	6	6	3	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	4	155533233	155533233	C	A	SNP	FGG	ENST00000336098	human	ensembl	69_37n	-1	known	nonsense	c.244	p.E82*	0.967	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGG	HGNC	ENSG00000171557	184	0	0	202	43	17.55	-	-	-	A	155533233	C	A	155533233	4	1	875	1	0	0	0	0	0	1	0	0	5916	922	32	2	1164	2	FGG	4	155533233	Nonsense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		155533233	35621043	18	71536										
PCDHB12	0	genome.wustl.edu	37	chr5	140589271	140589271	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggctccctggttgtgaccgtCtcagcctgggatttagactc	12	12	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	5	140589271	140589271	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	silent	c.792	p.V264	0.021	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	66	0	0	62	16	20.25	-	-	-	T	140589271	C	T	140589271	2	4	875	1	0	0	0	0	0	0	0	1	11610	900	32	2		2	PCDHB12	5	140589271	Silent	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		140589271	40325989	19	71537										
AFAP1L1	0	genome.wustl.edu	37	chr5	148702277	148702277	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tcaaagtcaaacgccacgccTccagtgagttgtgtgtgggc	12	11	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	5	148702277	148702277	T	C	SNP	AFAP1L1	ENST00000296721	human	ensembl	69_37n	1	known	missense	c.1807	p.S603P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510	21	0	0	10	14	58.33	-	-	-	C	148702277	T	C	148702277	3	2	875	1	0	0	0	0	1	0	0	0	354	1551	54	5	1865	5	AFAP1L1	5	148702277	Missense_Mutation	SNP	T	TCGA-E9-A295-01A-11D-A16D-09	8113006	148702277	32212983	20	71538										
RNF8	0	genome.wustl.edu	37	chr6	37349063	37349063	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gttctggacaattgcattaaTaagatggtaaataatctgag	9	4	2	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	37349063	37349063	T	C	SNP	RNF8	ENST00000373479	human	ensembl	69_37n	1	known	silent	c.1374	p.N458	0.997	pirsf_E3_Ub_ligase_RNF8	pfam_FHA_dom,pfam_Znf_C3HC4_RING-type,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pirsf_E3_Ub_ligase_RNF8,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	RNF8	HGNC	ENSG00000112130	36	0	0	49	12	19.67	-	-	-	C	37349063	T	C	37349063	2	2	875	1	0	0	0	0	0	0	0	1	13586	1403	49	5		5	RNF8	6	37349063	Silent	SNP	T	TCGA-E9-A295-01A-11D-A16D-09		37349063	133766004	21	71539										
CUL7	0	genome.wustl.edu	37	chr6	43019030	43019030	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcttgcaccagctccgagatCagggtgcccatggccatact	11	14	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	43019030	43019030	C	G	SNP	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	silent	c.1161	p.L387	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	22	0	0	19	5	20.83	-	-	-	G	43019030	C	G	43019030	2	3	875	1	0	0	0	0	0	0	0	1	4091	813	29	2		2	CUL7	6	43019030	Silent	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	5669967	43019030	128096037	22	71540										
PHACTR2	0	genome.wustl.edu	37	chr6	144033228	144033228	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ccaaacacctcccttcaaaaGaaaggggaaactatccacca	5	14	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	144033228	144033228	G	T	SNP	PHACTR2	ENST00000440869	human	ensembl	69_37n	1	known	missense	c.122	p.R41I	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	43	0	0	58	15	20.55	-	-	-	T	144033228	G	T	144033228	3	4	875	1	0	0	0	0	1	0	0	0	11884	942	33	2	145	2	PHACTR2	6	144033228	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	101014198	144033228	27081839	23	71541										
MAP3K4	0	genome.wustl.edu	37	chr6	161510422	161510422	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cagagaaaagctttccagcaGtccattgagggacttatgac	10	9	0	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	161510422	161510422	G	A	SNP	MAP3K4	ENST00000392142	human	ensembl	69_37n	1	known	silent	c.2892	p.Q964	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	81	0	0	82	18	18	-	-	-	A	161510422	G	A	161510422	2	1	875	1	0	0	0	0	0	0	0	1	9323	1020	36	4		4	MAP3K4	6	161510422	Silent	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	17477194	161510422	9604645	24	71542										
AGPAT4	0	genome.wustl.edu	37	chr6	161575278	161575278	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	aacagaagaccatctcggtgAagtaccacatccagccgata	8	12	1	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	161575278	161575278	A	G	SNP	AGPAT4	ENST00000320285	human	ensembl	69_37n	-1	known	missense	c.413	p.F138S	1.000	pfam_Acyltransferase,smart_Acyltransferase	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	AGPAT4	HGNC	ENSG00000026652	39	0	0	26	9	25.71	-	-	-	G	161575278	A	G	161575278	3	3	875	1	0	0	0	0	1	0	0	0	389	246	9	5	747	5	AGPAT4	6	161575278	Missense_Mutation	SNP	A	TCGA-E9-A295-01A-11D-A16D-09	64856	161575278	9539789	25	71543										
AUTS2	0	genome.wustl.edu	37	chr7	69364341	69364341	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ccctgaccaagaagaaacgaGaagcacttaccaatggcttg	9	11	0	4			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	7	69364341	69364341	G	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	nonsense	c.379	p.E127*	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	44	0	0	39	17	30.36	-	-	-	T	69364341	G	T	69364341	4	4	875	1	0	0	0	0	0	1	0	0	1229	943	33	2	385	2	AUTS2	7	69364341	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		69364341	89774322	26	71544										
AUTS2	0	genome.wustl.edu	37	chr7	70252256	70252256	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cagaactttagcaaccctcaCgaaccctggaaccggctgca	8	15	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	7	70252256	70252256	C	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	silent	c.2370	p.H790	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	32	0	0	25	5	16.67	-	-	-	T	70252256	C	T	70252256	2	4	875	1	0	0	0	0	0	0	0	1	1229	535	19	1		1	AUTS2	7	70252256	Silent	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	887915	70252256	88886407	27	71545										
CTSB	0	genome.wustl.edu	37	chr8	11704610	11704610	+	Frame_Shift_Del	DEL	G	G	-													0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	acagagaaagctccctccacGgggccgtttttgtagatctc							TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	11704610	11704610	G	-	DEL	CTSB	ENST00000353047	human	ensembl	69_37n	-1	known	frame_shift_del	c.744	p.V249fs	0.016	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733	35	0	0	47	7	12.96	-	-	-	-	11704610	G	-	11704610	7	5	875	1	0	1	0	1	0	0	0	0	4062	1103	39	0	287	0	CTSB	8	11704610	Frame_Shift_Del	DEL	G	TCGA-E9-A295-01A-11D-A16D-09		11704610	134659412	28	71546										
TRPS1	0	genome.wustl.edu	37	chr8	116426722	116426722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggcacgtgactcaagtagtgCggattcccaggaacggagag	15	9	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	116426722	116426722	C	A	SNP	TRPS1	ENST00000518018	human	ensembl	69_37n	-1	putative	missense	c.748	p.A250S	1.000	NULL	pfam_Znf_GATA,smart_Znf_GATA,prints_Znf_GATA,pfscan_Znf_GATA	-	no_start_codon:pseudogene:no_stop_codon	TRPS1	HGNC	ENSG00000104447	106	0	0	113	18	13.74	-	-	-	A	116426722	C	A	116426722	3	1	875	1	0	0	0	0	1	0	0	0	16689	755	27	3	474	3	TRPS1	8	116426722	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	104722112	116426722	29937300	29	71547										
ADCY8	0	genome.wustl.edu	37	chr8	132051949	132051949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcccagcaggatgcccttgaGcgggtccatgggggccgagg	18	12	0	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	132051949	132051949	G	T	SNP	ADCY8	ENST00000286355	human	ensembl	69_37n	-1	known	missense	c.631	p.L211I	0.816	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	32	0	0	41	13	24.07	-	-	-	T	132051949	G	T	132051949	3	4	875	1	0	0	0	0	1	0	0	0	300	971	34	4	3196	4	ADCY8	8	132051949	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	15625227	132051949	14312073	30	71548										
ZNF251	0	genome.wustl.edu	37	chr8	145948581	145948581	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tgtgaatattgggtttgttcAaactctgcccggcagaattt	10	7	2	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	145948581	145948581	A	G	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	missense	c.464	p.L155S	0.273	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	40	0	0	42	36	46.15	-	-	-	G	145948581	A	G	145948581	3	3	875	1	0	0	0	0	1	0	0	0	17892	131	5	5	1555	5	ZNF251	8	145948581	Missense_Mutation	SNP	A	TCGA-E9-A295-01A-11D-A16D-09	13896632	145948581	415441	31	71549										
DENND5A	0	genome.wustl.edu	37	chr11	9202357	9202357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tcttgaccaaggcttgcagcCgggcaatagtttcattctcc	9	12	3	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	9202357	9202357	C	T	SNP	DENND5A	ENST00000328194	human	ensembl	69_37n	-1	known	missense	c.1412	p.R471Q	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014	22	0	0	10	8	44.44	-	-	-	T	9202357	C	T	9202357	3	4	875	1	0	0	0	0	1	0	0	0	4472	652	23	1	2523	1	DENND5A	11	9202357	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		9202357	125804159	32	71550										
EXT2	0	genome.wustl.edu	37	chr11	44130752	44130752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	atttcttgacaggtgggatcGaggtacgaatcacctgttgt	12	7	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	44130752	44130752	G	A	SNP	EXT2	ENST00000395673	human	ensembl	69_37n	1	known	missense	c.644	p.R215Q	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348	68	0	0	52	7	11.86	-	-	-	A	44130752	G	A	44130752	3	1	875	1	0	0	0	0	1	0	0	0	5361	1058	37	1	654	1	EXT2	11	44130752	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	34928395	44130752	90875764	33	71551										
PTPRJ	0	genome.wustl.edu	37	chr11	48175418	48175418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tgagaatagaggaaagaatcGctataataatgttctgccct	9	6	1	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	48175418	48175418	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	missense	c.3209	p.R1070H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	50	0	0	64	12	15.79	-	-	-	A	48175418	G	A	48175418	3	1	875	1	0	0	0	0	1	0	0	0	12887	1087	38	1	3292	1	PTPRJ	11	48175418	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	4044666	48175418	86831098	34	71552										
OR4C46	0	genome.wustl.edu	37	chr11	51515861	51515861	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcactgacacccatatgctgGaactcttcattgctgccaac	7	14	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	51515861	51515861	G	T	SNP	OR4C46	ENST00000328188	human	ensembl	69_37n	1	known	nonsense	c.580	p.E194*	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C46	HGNC	ENSG00000185926	70	0	0	73	36	33.03	-	-	-	T	51515861	G	T	51515861	4	4	875	1	0	0	0	0	0	1	0	0	11124	1175	41	2	582	2	OR4C46	11	51515861	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	3340443	51515861	83490655	35	71553										
RNF214	0	genome.wustl.edu	37	chr11	117109661	117109661	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tgcctccaggaattgctctgAagagaaatccccacaaacct	7	13	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	117109661	117109661	A	C	SNP	RNF214	ENST00000300650	human	ensembl	69_37n	1	known	missense	c.452	p.E151A	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257	21	0	0	8	5	38.46	-	-	-	C	117109661	A	C	117109661	3	2	875	1	0	0	0	0	1	0	0	0	13564	246	9	5	458	5	RNF214	11	117109661	Missense_Mutation	SNP	A	TCGA-E9-A295-01A-11D-A16D-09	65593800	117109661	17896855	36	71554										
MFAP5	0	genome.wustl.edu	37	chr12	8814696	8814696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcaccttgggtcccaagagcGacatatctataggggtggtg	14	9	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	8814696	8814696	G	A	SNP	MFAP5	ENST00000359478	human	ensembl	69_37n	-1	known	missense	c.5	p.S2L	0.891	NULL	pfam_MAGP	-	no_errors	MFAP5	HGNC	ENSG00000197614	46	0	0	36	6	14.29	-	-	-	A	8814696	G	A	8814696	3	1	875	1	0	0	0	0	1	0	0	0	9589	1059	37	1	552	1	MFAP5	12	8814696	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		8814696	125037199	37	71555										
PDZRN4	0	genome.wustl.edu	37	chr12	41966546	41966546	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	agcagcacaattgaatgcaaTcaaggggagcaagagggagt	14	6	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	41966546	41966546	T	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	missense	c.1965	p.N655K	0.016	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	47	0	0	45	7	13.46	-	-	-	A	41966546	T	A	41966546	3	1	875	1	0	0	0	0	1	0	0	0	11783	1432	50	5	2076	5	PDZRN4	12	41966546	Missense_Mutation	SNP	T	TCGA-E9-A295-01A-11D-A16D-09	33151850	41966546	91885349	38	71556										
OR10AD1	0	genome.wustl.edu	37	chr12	48596743	48596743	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	aaagccaagaggatgcactcGgccacaccaacacagaagac	9	13	0	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	48596743	48596743	G	A	SNP	OR10AD1	ENST00000310248	human	ensembl	69_37n	-1	known	silent	c.333	p.A111	0.438	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AD1	HGNC	ENSG00000172640	42	0	0	37	6	13.95	-	-	-	A	48596743	G	A	48596743	2	1	875	1	0	0	0	0	0	0	0	1	10969	1103	39	1		1	OR10AD1	12	48596743	Silent	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	6630197	48596743	85255152	39	71557										
DIP2B	0	genome.wustl.edu	37	chr12	51108327	51108327	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	catccttgcaacatcctcatGtgcccccatacatgtgtgac	6	15	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	51108327	51108327	G	C	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	1	known	missense	c.2799	p.M933I	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	60	0	0	66	10	12.99	-	-	-	C	51108327	G	C	51108327	3	2	875	1	0	0	0	0	1	0	0	0	4564	1377	48	4	2889	4	DIP2B	12	51108327	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	2511584	51108327	82743568	40	71558										
KRT83	0	genome.wustl.edu	37	chr12	52714811	52714811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tcctgcttcacgcactgcgcGttggggtctatctccaggtt	11	13	3	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	52714811	52714811	G	A	SNP	KRT83	ENST00000293670	human	ensembl	69_37n	-1	known	silent	c.309	p.N103	0.986	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523	136	1	0.73	78	20	20.41	-	-	-	A	52714811	G	A	52714811	2	1	875	1	0	0	0	0	0	0	0	1	8550	1136	40	1		1	KRT83	12	52714811	Silent	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	1606484	52714811	81137084	41	71559										
NUAK1	0	genome.wustl.edu	37	chr12	106480580	106480580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggtctccctctcactgaggcGtcgccgctcactgatgtaat	10	14	3	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	106480580	106480580	G	T	SNP	NUAK1	ENST00000261402	human	ensembl	69_37n	-1	known	missense	c.445	p.R149S	0.694	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590	52	0	0	48	6	11.11	-	-	-	T	106480580	G	T	106480580	3	4	875	1	0	0	0	0	1	0	0	0	10785	1145	40	3	1560	3	NUAK1	12	106480580	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	53765769	106480580	27371315	42	71560										
FBXW8	0	genome.wustl.edu	37	chr12	117426610	117426610	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cccgcctgtcacatgtctagAcgtctcggccaaccaagttg	9	15	3	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	117426610	117426610	A	C	SNP	FBXW8	ENST00000309909	human	ensembl	69_37n	1	known	missense	c.1175	p.D392A	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_Quinonprotein_ADH-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989	33	0	0	22	6	21.43	-	-	-	C	117426610	A	C	117426610	3	2	875	1	0	0	0	0	1	0	0	0	5816	275	10	5	1201	5	FBXW8	12	117426610	Missense_Mutation	SNP	A	TCGA-E9-A295-01A-11D-A16D-09	10946030	117426610	16425285	43	71561										
NOS1	0	genome.wustl.edu	37	chr12	117662851	117662851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gatatcaaattgccgctgttGccagaagcttcggaaagggg	13	8	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	117662851	117662851	G	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.3796	p.Q1266K	1.000	pfam_OxRdtase_FAD/NAD-bd,pirsf_NOS_met,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	48	0	0	31	7	18.42	-	-	-	T	117662851	G	T	117662851	3	4	875	1	0	0	0	0	1	0	0	0	10613	1328	46	4	528	4	NOS1	12	117662851	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	236241	117662851	16189044	44	71562										
NBEA	0	genome.wustl.edu	37	chr13	35716469	35716469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cttggagaaaggctgatgttGcatacaaacactgtgactgt	11	7	0	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	13	35716469	35716469	G	T	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	1	known	missense	c.2400	p.L800F	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	69	0	0	37	11	22.92	-	-	-	T	35716469	G	T	35716469	3	4	875	1	0	0	0	0	1	0	0	0	10259	1310	46	4	2470	4	NBEA	13	35716469	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		35716469	79453409	45	71563										
ATP10A	0	genome.wustl.edu	37	chr15	25953412	25953412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gaggtaattctgagttttgcTccgaatctttttttgatgcc	9	7	2	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	25953412	25953412	T	C	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.2380	p.S794G	0.565	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	57	0	0	39	8	17.02	-	-	-	C	25953412	T	C	25953412	3	2	875	1	0	0	0	0	1	0	0	0	1120	1551	54	5	2163	5	ATP10A	15	25953412	Missense_Mutation	SNP	T	TCGA-E9-A295-01A-11D-A16D-09		25953412	76577980	46	71564										
C15orf55	0	genome.wustl.edu	37	chr15	34646055	34646055	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ctctagggcccctggcctctGaggtttgccagcagccaggt	13	14	2	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	34646055	34646055	G	C	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	missense	c.973	p.E325Q	1.000	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	40	0	0	39	7	15.22	-	-	-	C	34646055	G	C	34646055	3	2	875	1	0	0	0	0	1	0	0	0	1815	1291	45	2	987	2	C15orf55	15	34646055	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	8692643	34646055	67885337	47	71565										
THAP10	0	genome.wustl.edu	37	chr15	71175114	71175114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	acatacccacactacggtgaCggggccttttcaaagaaatt	8	11	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	71175114	71175114	C	T	SNP	THAP10	ENST00000249861	human	ensembl	69_37n	-1	known	missense	c.563	p.R188H	0.129	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP10	HGNC	ENSG00000129028	100	0	0	73	25	25.51	-	-	-	T	71175114	C	T	71175114	3	4	875	1	0	0	0	0	1	0	0	0	15937	536	19	1	218	1	THAP10	15	71175114	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	36529059	71175114	31356278	48	71566										
ARL6IP1	0	genome.wustl.edu	37	chr16	18810156	18810156	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cagacttgcagtctctgcagCctaaataccaccgacattta	6	13	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	18810156	18810156	C	G	SNP	ARL6IP1	ENST00000304414	human	ensembl	69_37n	-1	known	missense	c.37	p.A13P	1.000	NULL	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540	63	0	0	101	13	11.4	-	-	-	G	18810156	C	G	18810156	3	3	875	1	0	0	0	0	1	0	0	0	946	753	26	4	594	4	ARL6IP1	16	18810156	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		18810156	71544597	49	71567										
ZNF267	0	genome.wustl.edu	37	chr16	31926615	31926615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tcattcctaccgaagagaaaCcctgtaaatggaaagaatgt	8	8	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	31926615	31926615	C	G	SNP	ZNF267	ENST00000300870	human	ensembl	69_37n	1	known	missense	c.1045	p.P349A	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	47	0	0	41	28	40.58	-	-	-	G	31926615	C	G	31926615	3	3	875	1	0	0	0	0	1	0	0	0	17902	507	18	4	1059	4	ZNF267	16	31926615	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	13116459	31926615	58428138	50	71568										
GLP2R	0	genome.wustl.edu	37	chr17	9774137	9774137	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	agctcatcaaatgtgcttcaGagattataaatacaggtgag	9	6	3	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	17	9774137	9774137	G	C	SNP	GLP2R	ENST00000262441	human	ensembl	69_37n	1	known	missense	c.1130	p.R377T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325	104	0	0	52	19	26.76	-	-	-	C	9774137	G	C	9774137	3	2	875	1	0	0	0	0	1	0	0	0	6505	942	33	2	1168	2	GLP2R	17	9774137	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		9774137	71421073	51	71569										
HELZ	0	genome.wustl.edu	37	chr17	65074605	65074605	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggcataaggggtggaaactgGccaagatgctgcagcacact	14	9	0	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	17	65074605	65074605	G	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	silent	c.5592	p.G1864	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	21	0	0	17	5	22.73	-	-	-	A	65074605	G	A	65074605	2	1	875	1	0	0	0	0	0	0	0	1	7100	1190	42	4		4	HELZ	17	65074605	Silent	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	55300468	65074605	16120605	52	71570										
ABCA9	0	genome.wustl.edu	37	chr17	67031525	67031525	+	Frame_Shift_Del	DEL	A	A	-													0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	agaaacacaaccaagcccgtAaggaaaggtttctttatcaa							TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	17	67031525	67031525	A	-	DEL	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	frame_shift_del	c.990	p.T331fs	0.113	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	29	0	0	46	11	18.97	-	-	-	-	67031525	A	-	67031525	7	5	875	1	0	1	0	1	0	0	0	0	39	349	13	0	4012	0	ABCA9	17	67031525	Frame_Shift_Del	DEL	A	TCGA-E9-A295-01A-11D-A16D-09	1956920	67031525	14163685	53	71571										
TMED1	0	genome.wustl.edu	37	chr19	10943683	10943683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	ggcaggggctacgtgggcacCgggcgcttgtcctggaagaa	18	10	0	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	10943683	10943683	C	T	SNP	TMED1	ENST00000591695	human	ensembl	69_37n	-1	putative	missense	c.488	p.R163Q	0.000	NULL	pfam_GOLD,superfamily_GOLD	-	no_errors	TMED1	HGNC	ENSG00000099203	16	0	0	9	7	43.75	-	-	-	T	10943683	C	T	10943683	3	4	875	1	0	0	0	0	1	0	0	0	16097	639	23	1	15	1	TMED1	19	10943683	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		10943683	48185300	54	71572										
ZNF546	0	genome.wustl.edu	37	chr19	40521668	40521668	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	agagaaatcatattagtgagGaagtcctatgcataatgtaa	9	4	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	40521668	40521668	G	T	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	1	known	nonsense	c.2491	p.E831*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	14	0	0	18	7	28	-	-	-	T	40521668	G	T	40521668	4	4	875	1	0	0	0	0	0	1	0	0	18074	1175	41	2	2509	2	ZNF546	19	40521668	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	29577985	40521668	18607315	55	71573										
ZNF528	0	genome.wustl.edu	37	chr19	52919654	52919654	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gccatcagaaaattcatacaGgagaaaagccttacaaatgt	7	8	2	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	52919654	52919654	G	T	SNP	ZNF528	ENST00000360465	human	ensembl	69_37n	1	known	nonsense	c.1549	p.G517*	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555	42	0	0	49	9	15.52	-	-	-	T	52919654	G	T	52919654	4	4	875	1	0	0	0	0	0	1	0	0	18065	1001	35	4	1563	4	ZNF528	19	52919654	Nonsense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	12397986	52919654	6209329	56	71574										
C20orf24	0	genome.wustl.edu	37	chr20	35236207	35236207	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gttttgccattacgagggttCttgggaatagcagggtaagt	14	5	1	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	20	35236207	35236207	C	T	SNP	C20orf24	ENST00000373852	human	ensembl	69_37n	1	known	silent	c.204	p.F68	1.000	NULL	NULL	-	no_errors	C20orf24	HGNC	ENSG00000101084	133	0	0	207	35	14.46	-	-	-	T	35236207	C	T	35236207	2	4	875	1	0	0	0	0	0	0	0	1	2125	912	32	2		2	C20orf24	20	35236207	Silent	SNP	C	TCGA-E9-A295-01A-11D-A16D-09		35236207	27789313	57	71575										
CYP24A1	0	genome.wustl.edu	37	chr20	52786155	52786155	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	aaacgaccatttgttcagttCgctgtacaagtcttcaacgt	7	10	3	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	20	52786155	52786155	C	A	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	nonsense	c.616	p.E206*	0.986	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	40	0	0	63	9	12.5	-	-	-	A	52786155	C	A	52786155	4	1	875	1	0	0	0	0	0	1	0	0	4185	893	31	3	960	3	CYP24A1	20	52786155	Nonsense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	17549948	52786155	10239365	58	71576										
XBP1	0	genome.wustl.edu	37	chr22	29195125	29195126	+	Frame_Shift_Del	DEL	CT	CT	-													0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tctggcagtctgagctgctaCtctgtttttcagtttcctag							TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	22	29195125	29195126	CT	-	DEL	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	frame_shift_del	c.244_243	p.R81fs	1.000:1.000	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	55	0	0	64	11	14.67	-	-	-	-	29195126	CT	-	29195125	7	5	875	1	0	1	0	1	0	0	0	0	17519	565	20	0	928	0	XBP1	22	29195125	Frame_Shift_Del	DEL	CT	TCGA-E9-A295-01A-11D-A16D-09		29195125	22109441	59	71577										
NLGN4X	0	genome.wustl.edu	37	chrX	5811039	5811039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gcgtgagggtgtagtctggcGggcaggtgagcctcagtgtg	20	7	2	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	5811039	5811039	G	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.2330	p.P777Q	0.998	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	123	0	0	113	25	18.12	-	-	-	T	5811039	G	T	5811039	3	4	875	1	0	0	0	0	1	0	0	0	10536	1116	39	3	184	3	NLGN4X	23	5811039	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09		5811039	149459521	60	71578										
MBTPS2	0	genome.wustl.edu	37	chrX	21887782	21887782	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	atcaactttacagcagttaaGtttcccagttagaggtgtgt	9	7	1	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	21887782	21887782	G	A	SNP	MBTPS2	ENST00000379484	human	ensembl	69_37n	1	known	missense	c.956	p.S319N	1.000	pfam_Peptidase_M50	pfam_Peptidase_M50,superfamily_PDZ,prints_Pept_M50_SREBP	-	no_errors	MBTPS2	HGNC	ENSG00000012174	39	0	0	47	8	14.55	-	-	-	A	21887782	G	A	21887782	3	1	875	1	0	0	0	0	1	0	0	0	9433	1029	36	4	982	4	MBTPS2	23	21887782	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	16076743	21887782	133382778	61	71579										
DMD	0	genome.wustl.edu	37	chrX	32716093	32716093	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gggaagaagttctctcatatCcctgtgctagactgaccgtg	11	10	2	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	32716093	32716093	C	A	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.854	p.G285V	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	79	0	0	67	11	13.92	-	-	-	A	32716093	C	A	32716093	3	1	875	1	0	0	0	0	1	0	0	0	4616	855	30	2	10730	2	DMD	23	32716093	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	10828311	32716093	122554467	62	71580										
CXorf22	0	genome.wustl.edu	37	chrX	35989890	35989890	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	aagagtctgtgagaagaaagGcacgtgcaatgttttacatt	11	5	1	3			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	35989890	35989890	G	C	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	1	known	splice_site	c.2157+1	e12+1	0.996	-	-	-	no_errors	CXorf22	HGNC	ENSG00000165164	23	0	0	21	4	15.38	-	-	-	C	35989890	G	C	35989890	5	2	875	1	0	0	0	0	0	0	1	0	4133	1217	42	4	2204	4	CXorf22	23	35989890	Splice_Site	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	3273797	35989890	119280670	63	71581										
NXF5	0	genome.wustl.edu	37	chrX	101096303	101096303	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	taccgtttgttcatggtcagCtgcagagatagagatgaaga	12	6	2	4			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	101096303	101096303	C	A	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	splice_site	c.322-1	e5-1	1.000	-	-	-	no_errors	NXF5	HGNC	ENSG00000126952	96	0	0	105	13	11.02	-	-	-	A	101096303	C	A	101096303	5	1	875	1	0	0	0	0	0	0	1	0	10859	811	28	4	816	4	NXF5	23	101096303	Splice_Site	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	65106413	101096303	54174257	64	71582										
SAGE1	0	genome.wustl.edu	37	chrX	134988302	134988302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	tggcagcaactcctattccaGccatgagtgccagagatctc	9	13	1	2			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	134988302	134988302	G	T	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.574	p.A192S	0.002	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	65	0	0	74	16	17.58	-	-	-	T	134988302	G	T	134988302	3	4	875	1	0	0	0	0	1	0	0	0	13895	971	34	4	592	4	SAGE1	23	134988302	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	33891999	134988302	20282258	65	71583										
ARHGEF6	0	genome.wustl.edu	37	chrX	135750295	135750295	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	gtcccttcttgatttcagttCttcttccaggcattgcttca	6	12	5	1			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	135750295	135750295	C	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.2224	p.E742K	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	150	0	0	157	19	10.8	-	-	-	T	135750295	C	T	135750295	3	4	875	1	0	0	0	0	1	0	0	0	912	922	32	2	110	2	ARHGEF6	23	135750295	Missense_Mutation	SNP	C	TCGA-E9-A295-01A-11D-A16D-09	761993	135750295	19520265	66	71584										
ABCD1	0	genome.wustl.edu	37	chrX	152991469	152991469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0895522388059701	6	0.631445915637246	1.30315825029556	2.24432809773124	0.918134221799143	1	1	0	cctcggccatcgccggcctcGtggtgttcctcacggccaac	11	18	1	0			TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	152991469	152991469	G	A	SNP	ABCD1	ENST00000218104	human	ensembl	69_37n	1	known	missense	c.748	p.V250M	1.000	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986	12	0	0	13	7	35	-	-	-	A	152991469	G	A	152991469	3	1	875	1	0	0	0	0	1	0	0	0	60	1145	40	1	750	1	ABCD1	23	152991469	Missense_Mutation	SNP	G	TCGA-E9-A295-01A-11D-A16D-09	17241174	152991469	2279091	67	71585										
OTUD3	0	genome.wustl.edu	37	chr1	20224226	20224226	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	attgagagctgtatatctggCgctaaaaaccagtaatgttt	9	6	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	20224226	20224226	C	T	SNP	OTUD3	ENST00000466697	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	OTUD3	HGNC	ENSG00000169914	21	0	0	4	6	60	-	-	-	T	20224226	C	T	20224226	1	4	876	0	1	0	0	0	0	0	0	0	11386	783	27	1		1	OTUD3	1	20224226	RNA	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		20224226	229026395	1	71586										
RPL5	0	genome.wustl.edu	37	chr1	93307451	93307451	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	attttctatgattttttcagAtatagataataaacttatga	4	3	2	4			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	93307451	93307451	A	G	SNP	RPL5	ENST00000490963	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.852	-	-	-	no_errors	RPL5	HGNC	ENSG00000122406	12	0	0	6	4	40	-	-	-	G	93307451	A	G	93307451	1	3	876	0	1	0	0	0	0	0	0	0	13683	348	12	5		5	RPL5	1	93307451	RNA	SNP	A	TCGA-E9-A2JS-01A-11D-A17W-09	73083225	93307451	155943170	2	71587										
FLG	0	genome.wustl.edu	37	chr1	152278876	152278876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ttctggatcctgactgcccaCgggaggcatcagaccttccc	10	15	2	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	152278876	152278876	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8486	p.R2829H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	457	2	0.44	509	94	15.59	-	-	-	T	152278876	C	T	152278876	3	4	876	1	0	0	0	0	1	0	0	0	5968	536	19	1	3703	1	FLG	1	152278876	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	58971425	152278876	96971745	3	71588										
GON4L	0	genome.wustl.edu	37	chr1	155755112	155755112	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atcccgtgttctcactcgagGatcattactcacagtttcaa	6	12	4	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	155755112	155755112	G	A	SNP	GON4L	ENST00000467009	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	148	0	0	155	36	18.85	-	-	-	A	155755112	G	A	155755112	1	1	876	0	1	0	0	0	0	0	0	0	6621	1189	41	2		2	GON4L	1	155755112	RNA	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	3476236	155755112	93495509	4	71589										
SPTA1	0	genome.wustl.edu	37	chr1	158639209	158639209	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tctgcctaccttgtaatcttCatcatctgccaactttttct	3	13	6	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	158639209	158639209	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1822	p.E608K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	146	1	0.68	115	84	42.21	-	-	-	T	158639209	C	T	158639209	3	4	876	1	0	0	0	0	1	0	0	0	15207	835	29	2	5593	2	SPTA1	1	158639209	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	2884097	158639209	90611412	5	71590										
CR1L	0	genome.wustl.edu	37	chr1	207870999	207870999	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tgcacaccccagggagactgGagccctgcagcccccagatg	12	16	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	207870999	207870999	G	A	SNP	CR1L	ENST00000508064	human	ensembl	69_37n	1	known	nonsense	c.1014	p.W338*	0.820	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721	159	0	0	138	116	45.67	-	-	-	A	207870999	G	A	207870999	4	1	876	1	0	0	0	0	0	1	0	0	3871	1183	41	2	1036	2	CR1L	1	207870999	Nonsense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	49231790	207870999	41379622	6	71591										
HEATR1	0	genome.wustl.edu	37	chr1	236739582	236739582	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atataagatgggcaactataCacacaactaagtaagttttt	6	6	0	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	236739582	236739582	C	A	SNP	HEATR1	ENST00000366582	human	ensembl	69_37n	-1	known	silent	c.3021	p.V1007	0.569	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	118	0	0	79	47	37.3	-	-	-	A	236739582	C	A	236739582	2	1	876	1	0	0	0	0	0	0	0	1	7078	465	17	4		4	HEATR1	1	236739582	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	28868583	236739582	12511039	7	71592										
OR14C36	0	genome.wustl.edu	37	chr1	248512625	248512625	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tgtgacatcccctctctgctGaagctctcttgctctgacac	7	15	3	3			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	1	248512625	248512625	G	T	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	1	known	silent	c.549	p.L183	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	128	0	0	121	34	21.94	-	-	-	T	248512625	G	T	248512625	2	4	876	1	0	0	0	0	0	0	0	1	11019	1277	45	2		2	OR14C36	1	248512625	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	11773043	248512625	737996	8	71593										
CENPA	0	genome.wustl.edu	37	chr2	26987173	26987173	+	RNA	DEL	G	G	-													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cgcaggagaccccgggtgacGgggcccggcgccgctaactg							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	2	26987173	26987173	G	-	DEL	CENPA	ENST00000475662	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.084	-	-	-	no_errors	CENPA	HGNC	ENSG00000115163	10	0	0	7	2	22.22	-	-	-	-	26987173	G	-	26987173	6	5	876	0	1	1	0	1	0	0	0	0	3255	1131	39	0		0	CENPA	2	26987173	RNA	DEL	G	TCGA-E9-A2JS-01A-11D-A17W-09		26987173	216212200	9	71594										
MAP4K3	0	genome.wustl.edu	37	chr2	39552677	39552677	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	acctcaggatcatcatcatcGaaatcatggtaagtggaatg	9	8	5	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	2	39552677	39552677	G	A	SNP	MAP4K3	ENST00000263881	human	ensembl	69_37n	-1	known	silent	c.900	p.F300	0.997	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566	86	0	0	101	20	16.53	-	-	-	A	39552677	G	A	39552677	2	1	876	1	0	0	0	0	0	0	0	1	9332	1049	37	1		1	MAP4K3	2	39552677	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	12565504	39552677	203646696	10	71595										
CCDC138	0	genome.wustl.edu	37	chr2	109411103	109411103	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtccaaaatctaaagcatcaGacaagcggagtttacttcca	7	10	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	2	109411103	109411103	G	A	SNP	CCDC138	ENST00000295124	human	ensembl	69_37n	1	known	missense	c.502	p.D168N	0.129	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	71	0	0	20	41	67.21	-	-	-	A	109411103	G	A	109411103	3	1	876	1	0	0	0	0	1	0	0	0	2797	942	33	2	520	2	CCDC138	2	109411103	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	69858426	109411103	133788270	11	71596										
TTN	0	genome.wustl.edu	37	chr2	179611429	179611429	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtgaacacacattacccactCtttccattttgattctttca	3	12	3	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	2	179611429	179611429	C	A	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.15698	p.R5233I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	91	0	0	73	14	16.09	-	-	-	A	179611429	C	A	179611429	3	1	876	1	0	0	0	0	1	0	0	0	16832	913	32	2	94599	2	TTN	2	179611429	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	70200326	179611429	63587944	12	71597										
SDPR	0	genome.wustl.edu	37	chr2	192711272	192711272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tatccatgcgctctttgaccGcgcgcgtgtgggcgctgacc	13	14	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	2	192711272	192711272	G	A	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	missense	c.380	p.A127V	0.981	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	58	0	0	45	27	37.5	-	-	-	A	192711272	G	A	192711272	3	1	876	1	0	0	0	0	1	0	0	0	14058	1087	38	1	905	1	SDPR	2	192711272	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	13099843	192711272	50488101	13	71598										
KAT2B	0	genome.wustl.edu	37	chr3	20113931	20113931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cagtctaacagaatcctgtcGgagttgtagccatgccctag	10	11	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	3	20113931	20113931	G	A	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	missense	c.410	p.R137Q	1.000	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	62	0	0	53	30	36.14	-	-	-	A	20113931	G	A	20113931	3	1	876	1	0	0	0	0	1	0	0	0	8036	1116	39	1	416	1	KAT2B	3	20113931	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		20113931	177908499	14	71599										
RTP3	0	genome.wustl.edu	37	chr3	46541919	46541921	+	In_Frame_Del	DEL	GAG	GAG	-													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ttttccacatgaactggagtGaggagaagtccaggggccag							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	3	46541919	46541921	GAG	-	DEL	RTP3	ENST00000296142	human	ensembl	69_37n	1	known	in_frame_del	c.229_231	p.E78in_frame_del	0.001:0.001:0.002	NULL	NULL	-	no_errors	RTP3	HGNC	ENSG00000163825	45	0	0	16	18	52.94	-	-	-	-	46541921	GAG	-	46541919	7	5	876	1	0	1	0	1	0	0	0	0	13821	1291	45	0	235	0	RTP3	3	46541919	In_Frame_Del	DEL	GAG	TCGA-E9-A2JS-01A-11D-A17W-09	26427988	46541919	151480511	15	71600										
DOCK3	0	genome.wustl.edu	37	chr3	51399358	51399358	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctcacatgcgtctagtgaagCaggaaacatggtgatgctgg	13	8	2	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	3	51399358	51399358	C	G	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.5075	p.A1692G	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	115	0	0	41	23	35.94	-	-	-	G	51399358	C	G	51399358	3	3	876	1	0	0	0	0	1	0	0	0	4723	710	25	4	5265	4	DOCK3	3	51399358	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	4857439	51399358	146623072	16	71601										
EVC	0	genome.wustl.edu	37	chr4	5812121	5812121	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccccaggaaagaggggacctGggggtgcccaacaatgagga	16	10	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	5812121	5812121	G	T	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	silent	c.2838	p.L946	0.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	67	0	0	42	10	19.23	-	-	-	T	5812121	G	T	5812121	2	4	876	1	0	0	0	0	0	0	0	1	5322	1335	47	4		4	EVC	4	5812121	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		5812121	185342155	17	71602										
SH3TC1	0	genome.wustl.edu	37	chr4	8239229	8239229	+	Frame_Shift_Del	DEL	C	C	-													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctgaacgagcgcgtggcctaCcaccggctggccgccctgca							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	8239229	8239229	C	-	DEL	SH3TC1	ENST00000245105	human	ensembl	69_37n	1	known	frame_shift_del	c.3585	p.H1196fs	1.000	smart_TPR_repeat	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	13	0	0	16	8	33.33	-	-	-	-	8239229	C	-	8239229	7	5	876	1	0	1	0	1	0	0	0	0	14350	518	18	0	3647	0	SH3TC1	4	8239229	Frame_Shift_Del	DEL	C	TCGA-E9-A2JS-01A-11D-A17W-09	2427108	8239229	182915047	18	71603										
GABRA4	0	genome.wustl.edu	37	chr4	46967070	46967070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctttgatgtcttccttttggCtttttccatttgaatattgg	7	7	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	46967070	46967070	C	A	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1051	p.A351S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAa4_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	166	1	0.6	111	36	24.49	-	-	-	A	46967070	C	A	46967070	3	1	876	1	0	0	0	0	1	0	0	0	6212	797	28	4	621	4	GABRA4	4	46967070	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	38727841	46967070	144187206	19	71604										
GK2	0	genome.wustl.edu	37	chr4	80329160	80329160	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cacgttctcgctatacactcGtagacagactgaagaatttc	7	11	1	4			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	80329160	80329160	G	A	SNP	GK2	ENST00000358842	human	ensembl	69_37n	-1	known	silent	c.195	p.Y65	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	115	0	0	117	69	37.1	-	-	-	A	80329160	G	A	80329160	2	1	876	1	0	0	0	0	0	0	0	1	6473	1140	40	1		1	GK2	4	80329160	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	33362090	80329160	110825116	20	71605										
BMPR1B	0	genome.wustl.edu	37	chr4	96051023	96051024	+	Frame_Shift_Ins	INS	-	-	TA													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atttcacaggtccaaaggacINStatagctaagcagattcaga							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	96051023	96051024	-	TA	INS	BMPR1B	ENST00000440890	human	ensembl	69_37n	1	known	frame_shift_ins	c.686_687	p.A231fs	1.000:0.005	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	101	0	0	129	50	27.93	-	-	-	TA	96051024	-	TA	96051023	7	5	876	1	0	1	1	0	0	0	0	0	1475	565	20	0	618	0	BMPR1B	4	96051023	Frame_Shift_Ins	INS	-	TCGA-E9-A2JS-01A-11D-A17W-09	15721863	96051023	95103253	21	71606										
MMAA	0	genome.wustl.edu	37	chr4	146567239	146567239	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gaactttaggaggcgtgacaAggaccacaaatgaagctatt	11	7	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	4	146567239	146567239	A	G	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	1	known	missense	c.664	p.R222G	1.000	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	126	0	0	50	53	51.46	-	-	-	G	146567239	A	G	146567239	3	3	876	1	0	0	0	0	1	0	0	0	9710	63	3	5	674	5	MMAA	4	146567239	Missense_Mutation	SNP	A	TCGA-E9-A2JS-01A-11D-A17W-09	50516216	146567239	44587037	22	71607										
NSUN2	0	genome.wustl.edu	37	chr5	6600335	6600335	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gacgatgggacactgcagagCgtctggattcctacaagtga	13	9	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	6600335	6600335	C	A	SNP	NSUN2	ENST00000264670	human	ensembl	69_37n	-1	known	missense	c.2008	p.A670S	0.034	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474	58	0	0	15	30	66.67	-	-	-	A	6600335	C	A	6600335	3	1	876	1	0	0	0	0	1	0	0	0	10751	768	27	3	299	3	NSUN2	5	6600335	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		6600335	174314925	23	71608										
CCDC125	0	genome.wustl.edu	37	chr5	68609471	68609471	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cgtagaggcaatccttatccGgtagcatcttgacaaaggtg	11	9	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	68609471	68609471	G	A	SNP	CCDC125	ENST00000513172	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCDC125	HGNC	ENSG00000183323	43	0	0	19	14	42.42	-	-	-	A	68609471	G	A	68609471	1	1	876	0	1	0	0	0	0	0	0	0	2786	1131	39	1		1	CCDC125	5	68609471	RNA	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	62009136	68609471	112305789	24	71609										
PCDHA9	0	genome.wustl.edu	37	chr5	140230084	140230084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	acggccactgtgctggtgtcGctggtggagagcggccaggc	18	11	0	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	140230084	140230084	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	silent	c.2004	p.S668	0.159	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	51	0	0	55	9	14.06	-	-	-	A	140230084	G	A	140230084	2	1	876	1	0	0	0	0	0	0	0	1	11604	1074	38	1		1	PCDHA9	5	140230084	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	71620613	140230084	40685176	25	71610										
PCDHA11	0	genome.wustl.edu	37	chr5	140250385	140250385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	caacgcgccggcactgctggCgactcaggctggcagcgcgg	16	15	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	140250385	140250385	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	1	known	missense	c.1697	p.A566V	0.012	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	43	0	0	61	16	20.78	-	-	-	T	140250385	C	T	140250385	3	4	876	1	0	0	0	0	1	0	0	0	11594	768	27	1	1699	1	PCDHA11	5	140250385	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	20301	140250385	40664875	26	71611										
NUDCD2	0	genome.wustl.edu	37	chr5	162884615	162884615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ttgtagaatcaaagagtttgCcctgaaaaataaacatataa	6	5	1	3			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	162884615	162884615	C	G	SNP	NUDCD2	ENST00000302764	human	ensembl	69_37n	-1	known	missense	c.191	p.G64A	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD2	HGNC	ENSG00000170584	75	0	0	106	15	12.4	-	-	-	G	162884615	C	G	162884615	3	3	876	1	0	0	0	0	1	0	0	0	10796	753	26	4	294	4	NUDCD2	5	162884615	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	22634230	162884615	18030645	27	71612										
MGAT4B	0	genome.wustl.edu	37	chr5	179226611	179226611	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atgaactctacaatcaggctCaggtccagcgacttgaacat	8	11	3	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	5	179226611	179226611	C	T	SNP	MGAT4B	ENST00000518778	human	ensembl	69_37n	-1	novel	missense	c.412	p.E138K	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGAT4B	HGNC	ENSG00000161013	38	0	0	60	10	14.29	-	-	-	T	179226611	C	T	179226611	3	4	876	1	0	0	0	0	1	0	0	0	9617	813	29	2	738	2	MGAT4B	5	179226611	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	16341996	179226611	1688649	28	71613										
COL19A1	0	genome.wustl.edu	37	chr6	70637853	70637853	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	actcagtagctgccatgtttCgagtacgaagaaacgccaaa	9	10	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	6	70637853	70637853	C	T	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	nonsense	c.319	p.R107*	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	93	0	0	33	68	67.33	-	-	-	T	70637853	C	T	70637853	4	4	876	1	0	0	0	0	0	1	0	0	3706	876	31	1	333	1	COL19A1	6	70637853	Nonsense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		70637853	100477214	29	71614										
DDC	0	genome.wustl.edu	37	chr7	50607722	50607722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	agtaggggctgtgccagtgcGtcacctgcatgggaggacag	17	9	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	7	50607722	50607722	G	A	SNP	DDC	ENST00000357936	human	ensembl	69_37n	-1	known	missense	c.206	p.T69M	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437	59	0	0	36	37	50.68	-	-	-	A	50607722	G	A	50607722	3	1	876	1	0	0	0	0	1	0	0	0	4356	1145	40	1	1284	1	DDC	7	50607722	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		50607722	108530941	30	71615										
CAV1	0	genome.wustl.edu	37	chr7	116199190	116199190	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctctttcctgcacatctgggCagttgtaccatgcattaaga	8	11	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	7	116199190	116199190	C	A	SNP	CAV1	ENST00000341049	human	ensembl	69_37n	1	known	missense	c.386	p.A129E	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974	112	0	0	70	43	38.05	-	-	-	A	116199190	C	A	116199190	3	1	876	1	0	0	0	0	1	0	0	0	2718	710	25	4	396	4	CAV1	7	116199190	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	65591468	116199190	42939473	31	71616										
GRM8	0	genome.wustl.edu	37	chr7	126173023	126173023	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	taccttttctgctgactgggCtgtaccaaaaaagatgggga	11	8	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	7	126173023	126173023	C	A	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	missense	c.2413	p.A805S	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	76	0	0	71	16	18.39	-	-	-	A	126173023	C	A	126173023	3	1	876	1	0	0	0	0	1	0	0	0	6854	797	28	4	375	4	GRM8	7	126173023	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	9973833	126173023	32965640	32	71617										
FAM86B1	0	genome.wustl.edu	37	chr8	12051159	12051159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gactttttagaatgggcgagTgcagctgtgtcccagtgacc	13	9	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	8	12051159	12051159	T	C	SNP	FAM86B1	ENST00000530289	human	ensembl	69_37n	-1	known	missense	c.131	p.H44R	0.001	NULL	NULL	-	no_errors	FAM86B1	HGNC	ENSG00000186523	11	0	0	5	3	37.5	-	-	-	C	12051159	T	C	12051159	3	2	876	1	0	0	0	0	1	0	0	0	5689	1711	59	5		5	FAM86B1	8	12051159	Missense_Mutation	SNP	T	TCGA-E9-A2JS-01A-11D-A17W-09		12051159	134312863	33	71618										
CHRNB3	0	genome.wustl.edu	37	chr8	42563923	42563923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cctcagacatttgttccaagGttatcagaaatgggtccgcc	9	11	2	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	8	42563923	42563923	G	T	SNP	CHRNB3	ENST00000289957	human	ensembl	69_37n	1	known	missense	c.116	p.G39V	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432	111	0	0	221	32	12.65	-	-	-	T	42563923	G	T	42563923	3	4	876	1	0	0	0	0	1	0	0	0	3421	1261	44	4	122	4	CHRNB3	8	42563923	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	30512764	42563923	103800099	34	71619										
ARHGAP39	0	genome.wustl.edu	37	chr8	145757696	145757696	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtgggggactcaccagggacGtgggggtcttccaggcctgt	18	10	2	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	8	145757696	145757696	G	A	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	silent	c.2973	p.H991	0.811	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	50	0	0	54	16	22.86	-	-	-	A	145757696	G	A	145757696	2	1	876	1	0	0	0	0	0	0	0	1	886	1136	40	1		1	ARHGAP39	8	145757696	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	103193773	145757696	606326	35	71620										
IFNA13	0	genome.wustl.edu	37	chr9	21367501	21367501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	agagggatctcatgatttctGctctgacaacctcccaggca	9	12	3	3			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	9	21367501	21367501	G	T	SNP	IFNA13	ENST00000449498	human	ensembl	69_37n	-1	known	missense	c.509	p.A170E	0.223	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816	120	0	0	89	23	20.54	-	-	-	T	21367501	G	T	21367501	3	4	876	1	0	0	0	0	1	0	0	0	7587	1319	46	4	67	4	IFNA13	9	21367501	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		21367501	119845930	36	71621										
MORN5	0	genome.wustl.edu	37	chr9	124962240	124962240	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtgggtcacaggcccgagccGtgaactctgtggctgcctcc	14	14	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	9	124962240	124962240	G	A	SNP	MORN5	ENST00000486801	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MORN5	HGNC	ENSG00000185681	58	0	0	43	8	15.69	-	-	-	A	124962240	G	A	124962240	1	1	876	0	1	0	0	0	0	0	0	0	9783	1160	40	1		1	MORN5	9	124962240	RNA	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	103594739	124962240	16251191	37	71622										
USP20	0	genome.wustl.edu	37	chr9	132637217	132637217	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtggtgcagaacgccgagggCtacgtactcttctacaggtg	14	10	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	9	132637217	132637217	C	A	SNP	USP20	ENST00000315480	human	ensembl	69_37n	1	known	silent	c.2031	p.G677	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP20	HGNC	ENSG00000136878	43	0	0	32	12	27.27	-	-	-	A	132637217	C	A	132637217	2	1	876	1	0	0	0	0	0	0	0	1	17149	784	28	4		4	USP20	9	132637217	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	7674977	132637217	8576214	38	71623										
ADAMTS13	0	genome.wustl.edu	37	chr9	136302057	136302057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccttctaccactggggtgctGctgtaccacacagccaaggt	10	14	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	9	136302057	136302057	G	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	1	known	missense	c.1417	p.A473S	0.964	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	17	0	0	7	9	56.25	-	-	-	T	136302057	G	T	136302057	3	4	876	1	0	0	0	0	1	0	0	0	258	1319	46	4	1463	4	ADAMTS13	9	136302057	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	3664840	136302057	4911374	39	71624										
MTPAP	0	genome.wustl.edu	37	chr10	30605071	30605072	+	Frame_Shift_Ins	INS	-	-	T													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtttctgtgttctgtgaaggINStttaattctactcaagtcac							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	10	30605071	30605072	-	T	INS	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1678_1677	p.P559fs	1.000:0.931	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	128	0	0	82	28	25.45	-	-	-	T	30605072	-	T	30605071	7	5	876	1	0	1	1	0	0	0	0	0	10028	1261	44	0	472	0	MTPAP	10	30605071	Frame_Shift_Ins	INS	-	TCGA-E9-A2JS-01A-11D-A17W-09		30605071	104929676	40	71625										
DNHD1	0	genome.wustl.edu	37	chr11	6585602	6585602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tgactgtgtttggagataccCtcctatgttcagctgccatc	9	11	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	6585602	6585602	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	missense	c.10324	p.L3442F	0.999	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	75	0	0	34	21	38.18	-	-	-	T	6585602	C	T	6585602	3	4	876	1	0	0	0	0	1	0	0	0	4703	681	24	4	10451	4	DNHD1	11	6585602	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		6585602	128420914	41	71626										
CHRM4	0	genome.wustl.edu	37	chr11	46407681	46407681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tgccatcttggtggtgcgccGggcagggtaggtgagaggct	19	8	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	46407681	46407681	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	69_37n	-1	known	missense	c.427	p.R143W	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Musac_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	114	0	0	75	26	25.74	-	-	-	A	46407681	G	A	46407681	3	1	876	1	0	0	0	0	1	0	0	0	3408	1115	39	1	1016	1	CHRM4	11	46407681	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	39822079	46407681	88598835	42	71627										
OR4A5	0	genome.wustl.edu	37	chr11	51411541	51411541	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctcatctctgaatttctcaaCgtatatattaaaggactcag	5	9	4	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	51411541	51411541	C	T	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	silent	c.855	p.T285	0.314	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	50	0	0	38	10	20.83	-	-	-	T	51411541	C	T	51411541	2	4	876	1	0	0	0	0	0	0	0	1	11116	523	19	1		1	OR4A5	11	51411541	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	5003860	51411541	83594975	43	71628										
USP35	0	genome.wustl.edu	37	chr11	77921402	77921402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctccatccccctgctgctccGcctgccactggctggtggcc	10	20	0	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	77921402	77921402	G	A	SNP	USP35	ENST00000529308	human	ensembl	69_37n	1	known	missense	c.2501	p.R834H	0.997	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP35	HGNC	ENSG00000118369	63	0	0	59	24	24	-	-	-	A	77921402	G	A	77921402	3	1	876	1	0	0	0	0	1	0	0	0	17163	1087	38	1	2535	1	USP35	11	77921402	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	26509861	77921402	57085114	44	71629										
PHLDB1	0	genome.wustl.edu	37	chr11	118502193	118502193	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	agcactgagagcacccagcaGgaggtgagatggaggggtag	18	7	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	118502193	118502193	G	T	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	1	known	missense	c.2097	p.Q699H	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	42	0	0	10	19	65.52	-	-	-	T	118502193	G	T	118502193	3	4	876	1	0	0	0	0	1	0	0	0	11925	991	35	4	2119	4	PHLDB1	11	118502193	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	40580791	118502193	16504323	45	71630										
ST14	0	genome.wustl.edu	37	chr11	130068454	130068454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tgggaagtgcctctcgaaaaGccagcagtgcaatgggaagg	15	8	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	11	130068454	130068454	G	T	SNP	ST14	ENST00000278742	human	ensembl	69_37n	1	known	missense	c.1622	p.S541I	0.194	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pirsf_Peptidase_S1A_matripase,pfscan_LDrepeatLR_classA_rpt	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_CUB,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ST14	HGNC	ENSG00000149418	33	0	0	16	16	50	-	-	-	T	130068454	G	T	130068454	3	4	876	1	0	0	0	0	1	0	0	0	15302	971	34	4	1676	4	ST14	11	130068454	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	11566261	130068454	4938062	46	71631										
KLHDC5	0	genome.wustl.edu	37	chr12	27944828	27944828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atgtcattggaggatacactAccagaggtaagtgaagggac	13	6	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	27944828	27944828	A	G	SNP	KLHDC5	ENST00000381271	human	ensembl	69_37n	1	known	missense	c.1060	p.T354A	0.501	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHDC5	HGNC	ENSG00000087448	39	0	0	67	19	22.09	-	-	-	G	27944828	A	G	27944828	3	3	876	1	0	0	0	0	1	0	0	0	8412	391	14	5	1066	5	KLHDC5	12	27944828	Missense_Mutation	SNP	A	TCGA-E9-A2JS-01A-11D-A17W-09		27944828	105907067	47	71632										
KCNH3	0	genome.wustl.edu	37	chr12	49938036	49938036	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cgcggctggaccggtactcgCagtacagcgccgtggtgctg	16	13	0	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	49938036	49938036	C	A	SNP	KCNH3	ENST00000257981	human	ensembl	69_37n	1	known	missense	c.1060	p.Q354K	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_ELK	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	45	0	0	33	6	15.38	-	-	-	A	49938036	C	A	49938036	3	1	876	1	0	0	0	0	1	0	0	0	8087	711	25	4	1086	4	KCNH3	12	49938036	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	21993208	49938036	83913859	48	71633										
MARS	0	genome.wustl.edu	37	chr12	57910283	57910283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gaggttgctgcggaggtggcGaaactcttggatctaaagaa	15	6	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	57910283	57910283	G	A	SNP	MARS	ENST00000548944	human	ensembl	69_37n	1	putative	missense	c.139	p.E47K	1.000	pfam_Methionyl/Leucyl_tRNA_Synth	pfam_Methionyl/Leucyl_tRNA_Synth	-	no_start_codon	MARS	HGNC	ENSG00000166986	58	0	0	28	21	42.86	-	-	-	A	57910283	G	A	57910283	3	1	876	1	0	0	0	0	1	0	0	0	9387	1045	37	1	2704	1	MARS	12	57910283	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	7972247	57910283	75941612	49	71634										
POC1B	0	genome.wustl.edu	37	chr12	89864272	89864272	+	Splice_Site	SNP	C	C	A													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	attaactccaccgctgtgaaCtgatttgtagaaaataaaag							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	89864272	89864272	C	A	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	splice_site	c.677-1	e7-1	1.000	-	-	-	no_errors	POC1B	HGNC	ENSG00000139323	78	0	0	66	20	23.26	-	-	-	A	89864272	C	A	89864272	5	1	876	1	0	0	0	0	0	0	1	0	12250	579	20	4	784	4	POC1B	12	89864272	Splice_Site	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	31953989	89864272	43987623	50	71635	506	2								
POC1B	0	genome.wustl.edu	37	chr12	89864273	89864273	+	Splice_Site	SNP	T	T	G													0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ttaactccaccgctgtgaacTgatttgtagaaaataaaagc							TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	89864273	89864273	T	G	SNP	POC1B	ENST00000313546	human	ensembl	69_37n	-1	known	splice_site	c.677-2	e7-2	1.000	-	-	-	no_errors	POC1B	HGNC	ENSG00000139323	78	0	0	66	18	21.43	-	-	-	G	89864273	T	G	89864273	5	3	876	1	0	0	0	0	0	0	1	0	12250	1594	55	5	785	5	POC1B	12	89864273	Splice_Site	SNP	T	TCGA-E9-A2JS-01A-11D-A17W-09	1	89864273	43987622	51	71636	506	2								
TPCN1	0	genome.wustl.edu	37	chr12	113715121	113715121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccggatgagtgccagggagcGctatcttaccttcaaggccc	12	13	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	12	113715121	113715121	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	69_37n	1	known	missense	c.1352	p.R451H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815	43	0	0	74	13	14.94	-	-	-	A	113715121	G	A	113715121	3	1	876	1	0	0	0	0	1	0	0	0	16491	1087	38	1	1398	1	TPCN1	12	113715121	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	23850848	113715121	20136774	52	71637										
NUPL1	0	genome.wustl.edu	37	chr13	25914162	25914162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atcctggcatcacggcatcaGctggtttgacttttggggtg	13	9	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	13	25914162	25914162	G	A	SNP	NUPL1	ENST00000381736	human	ensembl	69_37n	1	known	missense	c.1690	p.A564T	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	112	0	0	34	73	68.22	-	-	-	A	25914162	G	A	25914162	3	1	876	1	0	0	0	0	1	0	0	0	10847	971	34	4	1752	4	NUPL1	13	25914162	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		25914162	89255716	53	71638										
CPNE6	0	genome.wustl.edu	37	chr14	24542738	24542738	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cagaggtgcttcgctcctgtTccagccctgtcttctcccgg	10	16	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	14	24542738	24542738	T	C	SNP	CPNE6	ENST00000537691	human	ensembl	69_37n	1	known	missense	c.364	p.S122P	0.985	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884	54	0	0	21	23	52.27	-	-	-	C	24542738	T	C	24542738	3	2	876	1	0	0	0	0	1	0	0	0	3846	1783	62	5	205	5	CPNE6	14	24542738	Missense_Mutation	SNP	T	TCGA-E9-A2JS-01A-11D-A17W-09		24542738	82806802	54	71639										
OR4N4	0	genome.wustl.edu	37	chr15	22383382	22383382	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccatgaagaggttattgagtCgacatgtagtctgtcaagtg	12	6	2	3			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	15	22383382	22383382	C	A	SNP	OR4N4	ENST00000328795	human	ensembl	69_37n	1	known	silent	c.910	p.R304	0.004	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706	63	0	0	37	6	13.95	-	-	-	A	22383382	C	A	22383382	2	1	876	1	0	0	0	0	0	0	0	1	11151	876	31	3		3	OR4N4	15	22383382	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		22383382	80148010	55	71640										
EDC3	0	genome.wustl.edu	37	chr15	74925124	74925124	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	agtgaccatttggcatcaatGccctgttcgacttcatgcac	8	12	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	15	74925124	74925124	G	T	SNP	EDC3	ENST00000315127	human	ensembl	69_37n	-1	known	silent	c.1356	p.G452	1.000	pfam_YjeF_N,superfamily_YjeF_N	pfam_YjeF_N,pfam_FDF_dom,superfamily_YjeF_N	-	no_errors	EDC3	HGNC	ENSG00000179151	80	0	0	45	6	11.76	-	-	-	T	74925124	G	T	74925124	2	4	876	1	0	0	0	0	0	0	0	1	4942	1306	46	4		4	EDC3	15	74925124	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	52541742	74925124	27606268	56	71641										
GLYR1	0	genome.wustl.edu	37	chr16	4867659	4867659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	atttttagcaagttggagacGattccacttcccatgagacc	8	10	0	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	16	4867659	4867659	G	A	SNP	GLYR1	ENST00000589389	human	ensembl	69_37n	-1	novel	missense	c.757	p.R253C	0.991	pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLYR1	HGNC	ENSG00000140632	85	0	0	86	43	33.33	-	-	-	A	4867659	G	A	4867659	3	1	876	1	0	0	0	0	1	0	0	0	6535	1048	37	1	843	1	GLYR1	16	4867659	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		4867659	85487094	57	71642										
PRR14	0	genome.wustl.edu	37	chr16	30666190	30666190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	gtctggggctgctgagggcaCtgcgtctgtcagcccccggc	16	14	3	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	16	30666190	30666190	C	T	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	1	known	missense	c.899	p.T300I	0.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	31	0	0	22	10	31.25	-	-	-	T	30666190	C	T	30666190	3	4	876	1	0	0	0	0	1	0	0	0	12667	565	20	4	925	4	PRR14	16	30666190	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	25798531	30666190	59688563	58	71643										
SUZ12	0	genome.wustl.edu	37	chr17	30325875	30325875	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cagcaaaaattagaaaagggGgaatctgcttcccctgcaaa	9	9	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	17	30325875	30325875	G	A	SNP	SUZ12	ENST00000322652	human	ensembl	69_37n	1	known	silent	c.2073	p.G691	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	17	0	0	27	7	20.59	-	-	-	A	30325875	G	A	30325875	2	1	876	1	0	0	0	0	0	0	0	1	15507	1219	43	4		4	SUZ12	17	30325875	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		30325875	50869335	59	71644										
TTYH2	0	genome.wustl.edu	37	chr17	72233552	72233552	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	aagttcatacagcagatggcGggcagcgttgttgttcagct	13	8	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	17	72233552	72233552	G	A	SNP	TTYH2	ENST00000269346	human	ensembl	69_37n	1	known	silent	c.534	p.A178	0.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540	52	0	0	63	13	17.11	-	-	-	A	72233552	G	A	72233552	2	1	876	1	0	0	0	0	0	0	0	1	16837	1103	39	1		1	TTYH2	17	72233552	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	41907677	72233552	8961658	60	71645										
BAHCC1	0	genome.wustl.edu	37	chr17	79414752	79414752	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	accggaccctcagcccccagCggcctctgggccccccagca	10	22	2	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	17	79414752	79414752	C	A	SNP	BAHCC1	ENST00000307745	human	ensembl	69_37n	1	known	missense	c.3854	p.A1285E	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	29	0	0	25	4	13.79	-	-	-	A	79414752	C	A	79414752	3	1	876	1	0	0	0	0	1	0	0	0	1300	768	27	3	3727	3	BAHCC1	17	79414752	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	7181200	79414752	1780458	61	71646										
GRIN3B	0	genome.wustl.edu	37	chr19	1004642	1004642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccgggacccacggggcgcccCggcctgggccacggtgggca	18	17	0	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	1004642	1004642	C	T	SNP	GRIN3B	ENST00000234389	human	ensembl	69_37n	1	known	missense	c.1142	p.P381L	0.997	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032	29	0	0	13	5	27.78	-	-	-	T	1004642	C	T	1004642	3	4	876	1	0	0	0	0	1	0	0	0	6835	652	23	1	1152	1	GRIN3B	19	1004642	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		1004642	58124341	62	71647										
AMH	0	genome.wustl.edu	37	chr19	2251714	2251714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	agcgctccgtactcatccccGagacctaccaggccaacaat	7	17	1	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	2251714	2251714	G	A	SNP	AMH	ENST00000221496	human	ensembl	69_37n	1	known	missense	c.1441	p.E481K	0.485	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Muellerian-inhibiting_factor	pfam_AMH_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_Muellerian-inhibiting_factor	-	no_errors	AMH	HGNC	ENSG00000104899	9	0	0	7	5	41.67	-	-	-	A	2251714	G	A	2251714	3	1	876	1	0	0	0	0	1	0	0	0	572	1059	37	1	1459	1	AMH	19	2251714	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	1247072	2251714	56877269	63	71648										
LGALS14	0	genome.wustl.edu	37	chr19	40196607	40196607	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ggctgtgctgtcagtaatgtGtgccgcttctgggaaggacg	16	8	2	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	40196607	40196607	G	T	SNP	LGALS14	ENST00000360675	human	ensembl	69_37n	1	known	silent	c.60	p.V20	0.003	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659	98	0	0	59	26	30.59	-	-	-	T	40196607	G	T	40196607	2	4	876	1	0	0	0	0	0	0	0	1	8795	1364	48	4		4	LGALS14	19	40196607	Silent	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	37944893	40196607	18932376	64	71649										
CYTH2	0	genome.wustl.edu	37	chr19	48978182	48978182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	acaccttcttcaacccggacCgggagggctggctcctgaag	12	14	2	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	48978182	48978182	C	T	SNP	CYTH2	ENST00000427476	human	ensembl	69_37n	1	known	missense	c.784	p.R262W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH2	HGNC	ENSG00000105443	110	0	0	115	15	11.54	-	-	-	T	48978182	C	T	48978182	3	4	876	1	0	0	0	0	1	0	0	0	4235	643	23	1	814	1	CYTH2	19	48978182	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	8781575	48978182	10150801	65	71650										
CYTH2	0	genome.wustl.edu	37	chr19	48981327	48981327	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cccaccccttccctttcaggGggccgggtgaagacgtggaa	13	14	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	48981327	48981327	G	A	SNP	CYTH2	ENST00000391881	human	ensembl	69_37n	1	known	missense	c.814	p.G272R	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	-	no_errors	CYTH2	HGNC	ENSG00000105443	29	0	0	30	32	51.61	-	-	-	A	48981327	G	A	48981327	3	1	876	1	0	0	0	0	1	0	0	0	4235	1246	43	4	847	4	CYTH2	19	48981327	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	3145	48981327	10147656	66	71651										
ZSCAN5A	0	genome.wustl.edu	37	chr19	56734013	56734013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tcagtcctgggttctcttccCtgttttccttcagatccttc	6	14	3	1			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	19	56734013	56734013	C	A	SNP	ZSCAN5A	ENST00000391713	human	ensembl	69_37n	-1	known	missense	c.686	p.R229M	0.008	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848	233	0	0	277	40	12.62	-	-	-	A	56734013	C	A	56734013	3	1	876	1	0	0	0	0	1	0	0	0	18329	681	24	4	812	4	ZSCAN5A	19	56734013	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	7752686	56734013	2394970	67	71652										
KIF16B	0	genome.wustl.edu	37	chr20	16486748	16486748	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	tagcctaaccccggtggctcCggtggcatctgcacgctcac	11	16	2	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	20	16486748	16486748	C	G	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.787	p.G263R	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	34	0	0	32	17	34.69	-	-	-	G	16486748	C	G	16486748	3	3	876	1	0	0	0	0	1	0	0	0	8330	661	23	3	3242	3	KIF16B	20	16486748	Missense_Mutation	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09		16486748	46538772	68	71653										
MC3R	0	genome.wustl.edu	37	chr20	54824148	54824148	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctctgcagcctggcggtggcCgacatgctggtaagtgtgtc	15	11	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	20	54824148	54824148	C	T	SNP	MC3R	ENST00000243911	human	ensembl	69_37n	1	known	silent	c.249	p.A83	0.993	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089	49	0	0	44	22	33.33	-	-	-	T	54824148	C	T	54824148	2	4	876	1	0	0	0	0	0	0	0	1	9436	639	23	1		1	MC3R	20	54824148	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	38337400	54824148	8201372	69	71654										
DGAT2L6	0	genome.wustl.edu	37	chrX	69424319	69424319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccatggccggggcttcactcGcggatcctggggcttcctgc	14	15	1	0			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	X	69424319	69424319	G	A	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	missense	c.812	p.R271H	0.023	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	72	0	0	57	11	15.94	-	-	-	A	69424319	G	A	69424319	3	1	876	1	0	0	0	0	1	0	0	0	4495	1087	38	1	834	1	DGAT2L6	23	69424319	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09		69424319	85846241	70	71655										
CHIC1	0	genome.wustl.edu	37	chrX	72804295	72804295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ccagcattggccgtgtgaatGcatgtttgaaaaaggctctc	11	9	1	2			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	X	72804295	72804295	G	T	SNP	CHIC1	ENST00000373502	human	ensembl	69_37n	1	known	missense	c.394	p.A132S	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC1	HGNC	ENSG00000204116	186	0	0	138	34	19.65	-	-	-	T	72804295	G	T	72804295	3	4	876	1	0	0	0	0	1	0	0	0	3372	1319	46	4	404	4	CHIC1	23	72804295	Missense_Mutation	SNP	G	TCGA-E9-A2JS-01A-11D-A17W-09	3379976	72804295	82466265	71	71656										
MAGEA6	0	genome.wustl.edu	37	chrX	151869895	151869895	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	ctgctgggtgacaatcagatCatgcccaagacaggcttcct	10	12	2	3			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	X	151869895	151869895	C	A	SNP	MAGEA6	ENST00000329342	human	ensembl	69_37n	1	known	silent	c.585	p.I195	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA6	HGNC	ENSG00000197172	156	0	0	93	23	19.83	-	-	-	A	151869895	C	A	151869895	2	1	876	1	0	0	0	0	0	0	0	1	9239	816	29	2		2	MAGEA6	23	151869895	Silent	SNP	C	TCGA-E9-A2JS-01A-11D-A17W-09	79065600	151869895	3400665	72	71657										
F8	0	genome.wustl.edu	37	chrX	154133244	154133244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	3	1	0.591291372761801	0	0.641973490427099	0.181818181818182	0.738198193588003	0	cctctgatcttcctcataagAaataaggctagaatagaagg	8	8	3	4			TCGA-E9-A2JS-01A-11D-A17W-09	TCGA-E9-A2JS-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ca32f508-7c87-4747-b6d5-e27e3f28b211	d8eec44c-d3a2-4ba6-9fa7-a36a9fc338bd	X	154133244	154133244	A	G	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5428	p.S1810P	0.999	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	144	0	0	113	18	13.74	-	-	-	G	154133244	A	G	154133244	3	3	876	1	0	0	0	0	1	0	0	0	5387	246	9	5	1699	5	F8	23	154133244	Missense_Mutation	SNP	A	TCGA-E9-A2JS-01A-11D-A17W-09	2263349	154133244	1137316	73	71658										
LRRN3	0	genome.wustl.edu	37	chr7	110763866	110763866	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.8	4	0.0642428460515373	3.45454545454545	4.31818181818182	2.15909090909091	0.485714285714286	1	0	atgctgaacagcaatgctctCagtgccctgtaccatggtac	9	12	1	1			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	7	110763866	110763866	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	silent	c.1038	p.L346	0.066	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	50	0	0	35	4	10.26	-	-	-	T	110763866	C	T	110763866	2	4	877	1	0	0	0	0	0	0	0	1	9102	813	29	2		2	LRRN3	7	110763866	Silent	SNP	C	TCGA-E9-A2JT-01A-22D-A18P-09		110763866	48374797	1	71659										
KIAA1429	0	genome.wustl.edu	37	chr8	95538749	95538749	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.8	4	0.0642428460515373	3.45454545454545	4.31818181818182	2.15909090909091	0.485714285714286	1	0	aggaagagatgaagtcttctCtgctaaatggtcaccaagtc	10	8	3	2			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	8	95538749	95538749	C	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.1723	p.E575Q	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	63	0	0	52	6	10.34	-	-	-	G	95538749	C	G	95538749	3	3	877	1	0	0	0	0	1	0	0	0	8283	922	32	2	3837	2	KIAA1429	8	95538749	Missense_Mutation	SNP	C	TCGA-E9-A2JT-01A-22D-A18P-09		95538749	50825273	2	71660										
CDH1	0	genome.wustl.edu	37	chr16	68847282	68847282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.8	4	0.0642428460515373	3.45454545454545	4.31818181818182	2.15909090909091	0.485714285714286	1	0	cactgaaagtgactgatgctGatgcccccaataccccagcg	9	14	0	4			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	16	68847282	68847282	G	C	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.1204	p.D402H	0.974	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	65	0	0	40	6	13.04	-	-	-	C	68847282	G	C	68847282	3	2	877	1	0	0	0	0	1	0	0	0	3124	1290	45	2	1238	2	CDH1	16	68847282	Missense_Mutation	SNP	G	TCGA-E9-A2JT-01A-22D-A18P-09		68847282	21507471	3	71661										
BAGE2	0	genome.wustl.edu	37	chr21	11060198	11060198	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.8	4	0.0642428460515373	3.45454545454545	4.31818181818182	2.15909090909091	0.485714285714286	1	0	tgtccaaacagaaagttcacGtaaatgtcgaaagaaaaagt	8	6	1	2			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	21	11060198	11060198	G	A	SNP	BAGE2	ENST00000474011	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172	10	0	0	9	6	40	-	-	-	A	11060198	G	A	11060198	1	1	877	0	1	0	0	0	0	0	0	0	1296	1160	40	1		1	BAGE2	21	11060198	RNA	SNP	G	TCGA-E9-A2JT-01A-22D-A18P-09		11060198	37069697	4	71662										
HTATSF1	0	genome.wustl.edu	37	chrX	135593757	135593757	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.8	4	0.0642428460515373	3.45454545454545	4.31818181818182	2.15909090909091	0.485714285714286	1	0	agatgaggaaggctctgagaGagagtttgacgaagattcag	15	4	2	6			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	X	135593757	135593757	G	C	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	1	known	missense	c.1853	p.R618T	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	33	0	0	40	5	11.11	-	-	-	C	135593757	G	C	135593757	3	2	877	1	0	0	0	0	1	0	0	0	7487	942	33	2	1887	2	HTATSF1	23	135593757	Missense_Mutation	SNP	G	TCGA-E9-A2JT-01A-22D-A18P-09		135593757	19676803	5	71663										
CELA2B	0	genome.wustl.edu	37	chr1	15807633	15807633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	caatggccagtggtaccacaCctgcggagggtccctgatag	13	12	0	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	15807633	15807633	C	A	SNP	CELA2B	ENST00000375910	human	ensembl	69_37n	1	known	missense	c.170	p.T57N	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704	44	0	0	26	31	54.39	-	-	-	A	15807633	C	A	15807633	3	1	878	1	0	0	0	0	1	0	0	0	3241	507	18	4	180	4	CELA2B	1	15807633	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09		15807633	233442988	1	71664										
FAF1	0	genome.wustl.edu	37	chr1	51048354	51048354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	atgagccaataaaaaatacaGgatggcaatcaccatatcta	6	8	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	51048354	51048354	G	T	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	missense	c.1049	p.P350H	1.000	smart_UAS	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	17	0	0	13	3	18.75	-	-	-	T	51048354	G	T	51048354	3	4	878	1	0	0	0	0	1	0	0	0	5409	1000	35	4	935	4	FAF1	1	51048354	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	35240721	51048354	198202267	2	71665										
SLC1A7	0	genome.wustl.edu	37	chr1	53569223	53569223	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ttgggggacttgacaactggGgtggtcttggtgcggtactg	18	6	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	53569223	53569223	G	T	SNP	SLC1A7	ENST00000371494	human	ensembl	69_37n	-1	known	silent	c.492	p.T164	0.941	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383	31	0	0	18	14	43.75	-	-	-	T	53569223	G	T	53569223	2	4	878	1	0	0	0	0	0	0	0	1	14526	1219	43	4		4	SLC1A7	1	53569223	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	2520869	53569223	195681398	3	71666										
MSH4	0	genome.wustl.edu	37	chr1	76356408	76356408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	atattctacataatgctaatGacaaatcgctcatattaatt	3	7	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	76356408	76356408	G	A	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	missense	c.2254	p.D752N	0.999	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	47	0	0	29	6	17.14	-	-	-	A	76356408	G	A	76356408	3	1	878	1	0	0	0	0	1	0	0	0	9944	1290	45	2	2320	2	MSH4	1	76356408	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	22787185	76356408	172894213	4	71667										
LINGO4	0	genome.wustl.edu	37	chr1	151774826	151774826	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aggccccatgattctgagccGattgccctgcagcctcaggg	12	14	2	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	151774826	151774826	G	C	SNP	LINGO4	ENST00000368820	human	ensembl	69_37n	-1	known	missense	c.355	p.R119G	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO4	HGNC	ENSG00000213171	28	0	0	39	12	23.53	-	-	-	C	151774826	G	C	151774826	3	2	878	1	0	0	0	0	1	0	0	0	8873	1057	37	3	1430	3	LINGO4	1	151774826	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	75418418	151774826	97475795	5	71668										
UHMK1	0	genome.wustl.edu	37	chr1	162482580	162482580	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gactgctgaatgtgctggatGatgattatcttgagaatgaa	12	4	1	5			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	162482580	162482580	G	A	SNP	UHMK1	ENST00000489294	human	ensembl	69_37n	1	known	missense	c.991	p.D331N	1.000	superfamily_Kinase-like_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332	34	0	0	46	11	19.3	-	-	-	A	162482580	G	A	162482580	3	1	878	1	0	0	0	0	1	0	0	0	17063	1290	45	2	1063	2	UHMK1	1	162482580	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	10707754	162482580	86768041	6	71669										
ATF3	0	genome.wustl.edu	37	chr1	212793520	212793520	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gggggcggggctgtcaccacGtgcagtatctcaagatattc	14	10	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	212793520	212793520	G	A	SNP	ATF3	ENST00000492118	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATF3	HGNC	ENSG00000162772	8	0	0	4	10	71.43	-	-	-	A	212793520	G	A	212793520	1	1	878	0	1	0	0	0	0	0	0	0	1085	1160	40	1		1	ATF3	1	212793520	RNA	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	50310940	212793520	36457101	7	71670										
OBSCN	0	genome.wustl.edu	37	chr1	228487757	228487757	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggatgggaccagttgtgagcTgcagattcgtggcctggtca	16	8	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	1	228487757	228487757	T	A	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	missense	c.3719	p.L1240Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	48	0	0	52	14	21.21	-	-	-	A	228487757	T	A	228487757	3	1	878	1	0	0	0	0	1	0	0	0	10885	1595	55	5		5	OBSCN	1	228487757	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	15694237	228487757	20762864	8	71671										
WDR35	0	genome.wustl.edu	37	chr2	20147950	20147950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tcaatatcttatctgatgcaGttatggcacaaattggatcc	7	8	3	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	20147950	20147950	G	T	SNP	WDR35	ENST00000345530	human	ensembl	69_37n	-1	known	missense	c.1532	p.T511N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	33	0	0	14	3	17.65	-	-	-	T	20147950	G	T	20147950	3	4	878	1	0	0	0	0	1	0	0	0	17386	1029	36	4	2069	4	WDR35	2	20147950	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		20147950	223051423	9	71672										
ALMS1	0	genome.wustl.edu	37	chr2	73800418	73800418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agtatgcttgtcacccagacGaattaaattatatagcagca	7	8	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	73800418	73800418	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.11411	p.R3804Q	0.601	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	15	0	0	7	5	41.67	-	-	-	A	73800418	G	A	73800418	3	1	878	1	0	0	0	0	1	0	0	0	535	1058	37	1	11473	1	ALMS1	2	73800418	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	53652468	73800418	169398955	10	71673										
WBP1	0	genome.wustl.edu	37	chr2	74687076	74687076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	caccgacgagctaaactcagGctgcaacaacagcagcggca	10	14	1	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	74687076	74687076	G	T	SNP	WBP1	ENST00000233615	human	ensembl	69_37n	1	known	missense	c.249	p.R83S	0.995	pfam_Uncharacterised_WW-bd	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1	HGNC	ENSG00000239779	23	0	0	10	7	41.18	-	-	-	T	74687076	G	T	74687076	3	4	878	1	0	0	0	0	1	0	0	0	17354	1194	42	4	259	4	WBP1	2	74687076	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	886658	74687076	168512297	11	71674										
TTN	0	genome.wustl.edu	37	chr2	179586824	179586824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ccagcaataacatctatagaTacaggcttgatgtcaaagaa	7	8	2	3			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	179586824	179586824	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.18834	p.V6278	0.742	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	39	0	0	11	23	67.65	-	-	-	C	179586824	T	C	179586824	2	2	878	1	0	0	0	0	0	0	0	1	16832	1393	49	5		5	TTN	2	179586824	Silent	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	104899748	179586824	63612549	12	71675										
FSIP2	0	genome.wustl.edu	37	chr2	186673767	186673767	+	Frame_Shift_Del	DEL	T	T	-													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gcatcaataagtgggagaaaTtactccttaggatcacctga							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	186673767	186673767	T	-	DEL	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	frame_shift_del	c.20001	p.Y6668fs	0.013	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	15	0	0	3	2	40	-	-	-	-	186673767	T	-	186673767	7	5	878	1	0	1	0	1	0	0	0	0	6124	1490	52	0	20067	0	FSIP2	2	186673767	Frame_Shift_Del	DEL	T	TCGA-E9-A3HO-01A-11D-A20S-09	7086943	186673767	56525606	13	71676										
ARMC9	0	genome.wustl.edu	37	chr2	232234731	232234731	+	RNA	SNP	C	C	A													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	cagagatgctggactggaacCcacccaaggcaaaggcgtca							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	232234731	232234731	C	A	SNP	ARMC9	ENST00000483477	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931	40	0	0	45	6	11.76	-	-	-	A	232234731	C	A	232234731	1	1	878	0	1	0	0	0	0	0	0	0	962	638	22	4		4	ARMC9	2	232234731	RNA	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	45560964	232234731	10964642	14	71677	507	2								
ARMC9	0	genome.wustl.edu	37	chr2	232234732	232234732	+	RNA	SNP	C	C	A													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agagatgctggactggaaccCacccaaggcaaaggcgtcag							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	2	232234732	232234732	C	A	SNP	ARMC9	ENST00000483477	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931	40	0	0	47	6	11.32	-	-	-	A	232234732	C	A	232234732	1	1	878	0	1	0	0	0	0	0	0	0	962	609	21	4		4	ARMC9	2	232234732	RNA	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	1	232234732	10964641	15	71678	507	2								
MUC4	0	genome.wustl.edu	37	chr3	195480050	195480050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agcagtggccttgattgtagCagtaattcacagggcaggac	13	8	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	3	195480050	195480050	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.15380	p.C5127Y	0.983	smart_EGF-like,pfscan_EG-like_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	22	0	0	18	24	57.14	-	-	-	T	195480050	C	T	195480050	3	4	878	1	0	0	0	0	1	0	0	0	10050	710	25	4	882	4	MUC4	3	195480050	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09		195480050	2542380	16	71679										
ZNF721	0	genome.wustl.edu	37	chr4	436142	436142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggtttcttgacctactaaagGctttgccacactcttcacat	6	12	3	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	4	436142	436142	G	C	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.2114	p.A705G	0.701	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	52	0	0	12	18	60	-	-	-	C	436142	G	C	436142	3	2	878	1	0	0	0	0	1	0	0	0	18218	1203	42	4	661	4	ZNF721	4	436142	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		436142	190718134	17	71680										
WDR1	0	genome.wustl.edu	37	chr4	10117755	10117755	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	acgtcgatgttccttaggatGacgcactttccattggtgta	10	9	0	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	4	10117755	10117755	G	T	SNP	WDR1	ENST00000382452	human	ensembl	69_37n	-1	known	silent	c.120	p.V40	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR1	HGNC	ENSG00000071127	71	0	0	47	18	27.69	-	-	-	T	10117755	G	T	10117755	2	4	878	1	0	0	0	0	0	0	0	1	17369	1277	45	2		2	WDR1	4	10117755	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	9681613	10117755	181036521	18	71681										
SHROOM3	0	genome.wustl.edu	37	chr4	77661463	77661463	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggaaagccgctcctgacctcGggagccatctggaccggcag	14	14	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	4	77661463	77661463	G	T	SNP	SHROOM3	ENST00000296043	human	ensembl	69_37n	1	known	missense	c.2137	p.G713W	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	47	0	0	21	3	12.5	-	-	-	T	77661463	G	T	77661463	3	4	878	1	0	0	0	0	1	0	0	0	14384	1116	39	3	2155	3	SHROOM3	4	77661463	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	67543708	77661463	113492813	19	71682										
MANBA	0	genome.wustl.edu	37	chr4	103610766	103610766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aatatttaagcctccatccaGttcaaaaagaacagtcatgt	5	9	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	4	103610766	103610766	G	T	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	missense	c.925	p.L309M	0.097	superfamily_Glyco_hydro_2_Ig-like	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	52	0	0	30	4	11.76	-	-	-	T	103610766	G	T	103610766	3	4	878	1	0	0	0	0	1	0	0	0	9290	1020	36	4	1758	4	MANBA	4	103610766	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	25949303	103610766	87543510	20	71683										
WDR17	0	genome.wustl.edu	37	chr4	177083309	177083309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agccgcatgttgccatcttgCcatagataatattgaggtac	9	9	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	4	177083309	177083309	C	T	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.2906	p.A969V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	43	0	0	16	3	15	-	-	-	T	177083309	C	T	177083309	3	4	878	1	0	0	0	0	1	0	0	0	17374	739	26	4	2988	4	WDR17	4	177083309	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	73472543	177083309	14070967	21	71684										
DAB2	0	genome.wustl.edu	37	chr5	39376958	39376958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	catccttgatctctttatccCcaagtgggtctaaggcagtg	9	11	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	5	39376958	39376958	C	A	SNP	DAB2	ENST00000320816	human	ensembl	69_37n	-1	known	missense	c.1931	p.G644V	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	63	0	0	41	20	32.79	-	-	-	A	39376958	C	A	39376958	3	1	878	1	0	0	0	0	1	0	0	0	4250	623	22	4	393	4	DAB2	5	39376958	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09		39376958	141538302	22	71685										
FBN2	0	genome.wustl.edu	37	chr5	127666379	127666379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gtgggttccattagaacattCgtccagatctgcagaacaca	9	10	1	3			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	5	127666379	127666379	C	T	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	missense	c.4231	p.E1411K	1.000	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	34	0	0	25	14	35.9	-	-	-	T	127666379	C	T	127666379	3	4	878	1	0	0	0	0	1	0	0	0	5749	893	31	1	4639	1	FBN2	5	127666379	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	88289421	127666379	53248881	23	71686										
BRD2	0	genome.wustl.edu	37	chr6	32942393	32942394	+	Frame_Shift_Del	DEL	CC	CC	-													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aacttacccctgccaacccaCcacccccggaggtgtccaat							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	6	32942393	32942394	CC	-	DEL	BRD2	ENST00000395289	human	ensembl	69_37n	1	known	frame_shift_del	c.184_185	p.P62fs	1.000:1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256	34	0	0	26	12	31.58	-	-	-	-	32942394	CC	-	32942393	7	5	878	1	0	1	0	1	0	0	0	0	1510	507	18	0	190	0	BRD2	6	32942393	Frame_Shift_Del	DEL	CC	TCGA-E9-A3HO-01A-11D-A20S-09		32942393	138172674	24	71687										
DOPEY1	0	genome.wustl.edu	37	chr6	83847275	83847275	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aagtggaatctgcatcagttAcatctcaattagaaattgaa	7	6	3	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	6	83847275	83847275	A	C	SNP	DOPEY1	ENST00000349129	human	ensembl	69_37n	1	known	missense	c.3514	p.T1172P	0.006	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	21	0	0	16	16	50	-	-	-	C	83847275	A	C	83847275	3	2	878	1	0	0	0	0	1	0	0	0	4742	391	14	5	3588	5	DOPEY1	6	83847275	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09	50904882	83847275	87267792	25	71688										
ATG5	0	genome.wustl.edu	37	chr6	106649958	106649958	+	Missense_Mutation	SNP	T	T	A													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ctgaatgaaaggtctttcagTcgttgtctatttgaaaaagg							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	6	106649958	106649958	T	A	SNP	ATG5	ENST00000343245	human	ensembl	69_37n	-1	known	missense	c.580	p.T194S	0.991	pfam_Autophagy-rel_prot_5	pfam_Autophagy-rel_prot_5	-	no_errors	ATG5	HGNC	ENSG00000057663	26	0	0	22	4	15.38	-	-	-	A	106649958	T	A	106649958	3	1	878	1	0	0	0	0	1	0	0	0	1104	1667	58	5	255	5	ATG5	6	106649958	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	22802683	106649958	64465109	26	71689	508	2								
ATG5	0	genome.wustl.edu	37	chr6	106649961	106649961	+	Missense_Mutation	SNP	T	T	A													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aatgaaaggtctttcagtcgTtgtctatttgaaaaaggaaa							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	6	106649961	106649961	T	A	SNP	ATG5	ENST00000343245	human	ensembl	69_37n	-1	known	missense	c.577	p.T193S	0.961	pfam_Autophagy-rel_prot_5	pfam_Autophagy-rel_prot_5	-	no_errors	ATG5	HGNC	ENSG00000057663	26	0	0	21	4	16	-	-	-	A	106649961	T	A	106649961	3	1	878	1	0	0	0	0	1	0	0	0	1104	1725	60	5	258	5	ATG5	6	106649961	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	3	106649961	64465106	27	71690	508	2								
FAM26D	0	genome.wustl.edu	37	chr6	116875223	116875223	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tgcagctgtgcccctccataCaggagaatcagccccctaga	9	15	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	6	116875223	116875223	C	G	SNP	FAM26D	ENST00000368596	human	ensembl	69_37n	1	known	nonsense	c.267	p.Y89*	0.000	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	34	0	0	18	24	57.14	-	-	-	G	116875223	C	G	116875223	4	3	878	1	0	0	0	0	0	1	0	0	5595	493	17	4		4	FAM26D	6	116875223	Nonsense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	10225262	116875223	54239844	28	71691										
ASZ1	0	genome.wustl.edu	37	chr7	117008695	117008695	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	atttacaggtaactcagtaaTaacattctgtacagctgtta	6	7	2	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	7	117008695	117008695	T	A	SNP	ASZ1	ENST00000284629	human	ensembl	69_37n	-1	known	missense	c.1132	p.I378F	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ASZ1	HGNC	ENSG00000154438	24	0	0	18	5	21.74	-	-	-	A	117008695	T	A	117008695	3	1	878	1	0	0	0	0	1	0	0	0	1073	1406	49	5	307	5	ASZ1	7	117008695	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09		117008695	42129968	29	71692										
ZYX	0	genome.wustl.edu	37	chr7	143085893	143085893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agtgtaacacctgcggggagCccatcactgaccgcatgctg	12	13	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	7	143085893	143085893	C	T	SNP	ZYX	ENST00000322764	human	ensembl	69_37n	1	known	missense	c.1348	p.P450S	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZYX	HGNC	ENSG00000159840	36	0	0	21	25	54.35	-	-	-	T	143085893	C	T	143085893	3	4	878	1	0	0	0	0	1	0	0	0	18345	739	26	4	1374	4	ZYX	7	143085893	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	26077198	143085893	16052770	30	71693										
CSMD1	0	genome.wustl.edu	37	chr8	2967826	2967826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ccaggggagtagatggtgccGttctgagaagttacgttgta	15	6	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	8	2967826	2967826	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6465	p.N2155K	0.953	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	29	0	0	20	4	16.67	-	-	-	T	2967826	G	T	2967826	3	4	878	1	0	0	0	0	1	0	0	0	3976	1136	40	3	4344	3	CSMD1	8	2967826	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		2967826	143396196	31	71694										
GOLGA7	0	genome.wustl.edu	37	chr8	41367138	41367138	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gggcccctcatgtatccactGgccgaccgcagagtgtccct	11	16	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	8	41367138	41367138	G	T	SNP	GOLGA7	ENST00000521417	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	GOLGA7	HGNC	ENSG00000147533	34	0	0	34	4	10.53	-	-	-	T	41367138	G	T	41367138	1	4	878	0	1	0	0	0	0	0	0	0	6611	1363	47	4		4	GOLGA7	8	41367138	RNA	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	38399312	41367138	104996884	32	71695										
ST18	0	genome.wustl.edu	37	chr8	53092687	53092687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tctcctccttgctacctgcgGtagagtgaccatgtgtttcc	9	13	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	8	53092687	53092687	G	A	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.272	p.T91I	0.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	60	0	0	39	16	29.09	-	-	-	A	53092687	G	A	53092687	3	1	878	1	0	0	0	0	1	0	0	0	15303	1261	44	4	2943	4	ST18	8	53092687	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	11725549	53092687	93271335	33	71696										
PSIP1	0	genome.wustl.edu	37	chr9	15472724	15472724	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	attccttctgtgagcagtctGaaagttcctcccaccttttc	6	13	2	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	9	15472724	15472724	G	C	SNP	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	missense	c.883	p.Q295E	0.999	NULL	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	51	0	0	40	20	33.33	-	-	-	C	15472724	G	C	15472724	3	2	878	1	0	0	0	0	1	0	0	0	12743	1299	45	2	766	2	PSIP1	9	15472724	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		15472724	125740707	34	71697										
PTGES2	0	genome.wustl.edu	37	chr9	130883459	130883459	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggcctcggtgatggccctctCcacccgcaggtaccagggct	13	16	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	9	130883459	130883459	C	G	SNP	PTGES2	ENST00000338961	human	ensembl	69_37n	-1	known	missense	c.1099	p.E367Q	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutaredoxin,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	PTGES2	HGNC	ENSG00000148334	32	0	0	33	16	32.65	-	-	-	G	130883459	C	G	130883459	3	3	878	1	0	0	0	0	1	0	0	0	12828	864	30	2	38	2	PTGES2	9	130883459	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	115410735	130883459	10329972	35	71698										
KIAA1217	0	genome.wustl.edu	37	chr10	24833322	24833323	+	Frame_Shift_Del	DEL	AA	AA	-													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aagttcatcccacatagcccAagaggcctctccccgaccct							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	10	24833322	24833323	AA	-	DEL	KIAA1217	ENST00000376454	human	ensembl	69_37n	1	known	frame_shift_del	c.5123_5124	p.Q1708fs	0.001:0.001	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	24	0	0	17	10	34.48	-	-	-	-	24833323	AA	-	24833322	7	5	878	1	0	1	0	1	0	0	0	0	8268	130	5	0	5197	0	KIAA1217	10	24833322	Frame_Shift_Del	DEL	AA	TCGA-E9-A3HO-01A-11D-A20S-09		24833322	110701425	36	71699										
FAM13C	0	genome.wustl.edu	37	chr10	61023902	61023902	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ccatttcaggacttcaggatTagaagtcttgtcaccatgtg	9	9	4	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	10	61023902	61023902	T	G	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.967	p.N323H	0.999	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	42	0	0	49	12	19.67	-	-	-	G	61023902	T	G	61023902	3	3	878	1	0	0	0	0	1	0	0	0	5494	1754	61	5	814	5	FAM13C	10	61023902	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	36190580	61023902	74510845	37	71700										
PGAM1	0	genome.wustl.edu	37	chr10	99192356	99192356	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ctctgcccctcccacctgcaCatgtcacactgaccacatct	4	20	3	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	10	99192356	99192356	C	G	SNP	PGAM1	ENST00000467867	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.167	-	-	-	no_errors	PGAM1	HGNC	ENSG00000171314	25	0	0	7	5	41.67	-	-	-	G	99192356	C	G	99192356	1	3	878	0	1	0	0	0	0	0	0	0	11847	493	17	4		4	PGAM1	10	99192356	RNA	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	38168454	99192356	36342391	38	71701										
OR52A5	0	genome.wustl.edu	37	chr11	5153313	5153313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	cttcagtagccagcttcacgAtggccatgtgctcacagtaa	9	12	3	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	11	5153313	5153313	A	G	SNP	OR52A5	ENST00000307388	human	ensembl	69_37n	-1	known	missense	c.560	p.I187T	0.982	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	23	0	0	34	5	12.82	-	-	-	G	5153313	A	G	5153313	3	3	878	1	0	0	0	0	1	0	0	0	11183	333	12	5	393	5	OR52A5	11	5153313	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09		5153313	129853203	39	71702										
NELL1	0	genome.wustl.edu	37	chr11	20805317	20805317	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gaattcaccattttggccacTgtacagcagaagccatccac	7	13	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	11	20805317	20805317	T	G	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	1	known	silent	c.276	p.T92	0.004	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	30	0	0	26	5	16.13	-	-	-	G	20805317	T	G	20805317	2	3	878	1	0	0	0	0	0	0	0	1	10405	1567	55	5		5	NELL1	11	20805317	Silent	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	15652004	20805317	114201199	40	71703										
C11orf82	0	genome.wustl.edu	37	chr11	82644836	82644836	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tgaaaatgacaaacagcaagCcagcccaagctgtccaaaaa	7	11	0	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	11	82644836	82644836	C	G	SNP	C11orf82	ENST00000430323	human	ensembl	69_37n	1	known	missense	c.2456	p.A819G	0.001	NULL	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	-	no_errors	C11orf82	HGNC	ENSG00000165490	23	0	0	17	5	22.73	-	-	-	G	82644836	C	G	82644836	3	3	878	1	0	0	0	0	1	0	0	0	1676	739	26	4	2470	4	C11orf82	11	82644836	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	61839519	82644836	52361680	41	71704										
TMPRSS12	0	genome.wustl.edu	37	chr12	51252720	51252720	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tgcactttttcacttaaaaaAagcagtgaggtataatgact	7	6	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	12	51252720	51252720	A	G	SNP	TMPRSS12	ENST00000398458	human	ensembl	69_37n	1	known	missense	c.536	p.K179R	0.968	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS12	HGNC	ENSG00000186452	34	0	0	23	17	42.5	-	-	-	G	51252720	A	G	51252720	3	3	878	1	0	0	0	0	1	0	0	0	16339	14	1	5	546	5	TMPRSS12	12	51252720	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09		51252720	82599175	42	71705										
DCTN2	0	genome.wustl.edu	37	chr12	57932304	57932304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aaaggtcaggcttcttaccaGctccttgtggtttccccaga	9	12	2	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	12	57932304	57932304	G	A	SNP	DCTN2	ENST00000434715	human	ensembl	69_37n	-1	known	silent	c.118	p.L40	1.000	pfam_Dynamitin_2su	pfam_Dynamitin_2su	-	no_errors	DCTN2	HGNC	ENSG00000175203	20	0	0	25	11	30.56	-	-	-	A	57932304	G	A	57932304	2	1	878	1	0	0	0	0	0	0	0	1	4338	986	34	4		4	DCTN2	12	57932304	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	6679584	57932304	75919591	43	71706										
ACACB	0	genome.wustl.edu	37	chr12	109687895	109687895	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ctctggcttacgaagagatcGtcaccattagcttggtgagt	11	9	2	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	12	109687895	109687895	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	1	known	missense	c.5776	p.V1926F	0.472	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	48	0	0	34	4	10.53	-	-	-	T	109687895	G	T	109687895	3	4	878	1	0	0	0	0	1	0	0	0	107	1145	40	3	5934	3	ACACB	12	109687895	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	51755591	109687895	24164000	44	71707										
FLT3	0	genome.wustl.edu	37	chr13	28631541	28631541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agcttcactctgaataaaaaGtaggtattctccagcttggg	9	8	3	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	13	28631541	28631541	G	T	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	missense	c.427	p.L143I	0.994	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	63	0	0	34	4	10.53	-	-	-	T	28631541	G	T	28631541	3	4	878	1	0	0	0	0	1	0	0	0	5988	1029	36	4	2638	4	FLT3	13	28631541	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		28631541	86538337	45	71708										
RB1	0	genome.wustl.edu	37	chr13	48881458	48881459	+	Frame_Shift_Ins	INS	-	-	AT													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aacctgattttactgcattaINStgtcagaaattaaagatacc							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	13	48881458	48881459	-	AT	INS	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_ins	c.180_181	p.C60fs	1.000:1.000	superfamily_FH2_actin-bd,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	15	0	0	10	7	41.18	-	-	-	AT	48881459	-	AT	48881458	7	5	878	1	0	1	1	0	0	0	0	0	13181	446	16	0	186	0	RB1	13	48881458	Frame_Shift_Ins	INS	-	TCGA-E9-A3HO-01A-11D-A20S-09	20249917	48881458	66288420	46	71709										
RIPK3	0	genome.wustl.edu	37	chr14	24806073	24806073	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	aattgaacagggaaaagaaaGaggtagagaatgggtacctg	14	3	0	4			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	14	24806073	24806073	G	C	SNP	RIPK3	ENST00000554569	human	ensembl	69_37n	-1	putative	silent	c.396	p.L132	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIPK3	HGNC	ENSG00000129465	37	0	0	21	22	51.16	-	-	-	C	24806073	G	C	24806073	2	2	878	1	0	0	0	0	0	0	0	1	13468	957	33	2		2	RIPK3	14	24806073	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		24806073	82543467	47	71710										
RNF111	0	genome.wustl.edu	37	chr15	59377902	59377902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gactgcagctacttatacacCtggtgcattgcatcctcact	7	13	1	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	15	59377902	59377902	C	T	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	missense	c.2495	p.P832L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	36	0	0	23	7	23.33	-	-	-	T	59377902	C	T	59377902	3	4	878	1	0	0	0	0	1	0	0	0	13511	681	24	4	2502	4	RNF111	15	59377902	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09		59377902	43153490	48	71711										
E4F1	0	genome.wustl.edu	37	chr16	2283116	2283116	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tggtgacagatgccaagggcAccgtcatccacgaagtccac	11	13	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	16	2283116	2283116	A	G	SNP	E4F1	ENST00000301727	human	ensembl	69_37n	1	known	missense	c.988	p.T330A	0.981	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967	41	0	0	59	13	18.06	-	-	-	G	2283116	A	G	2283116	3	3	878	1	0	0	0	0	1	0	0	0	4909	159	6	5	1014	5	E4F1	16	2283116	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09		2283116	88071637	49	71712										
IQCK	0	genome.wustl.edu	37	chr16	19775192	19775192	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gaaaagaaccaaattcattgCctgtgattttctgactgagt	8	7	2	4			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	16	19775192	19775192	C	G	SNP	IQCK	ENST00000320394	human	ensembl	69_37n	1	known	missense	c.497	p.A166G	1.000	NULL	NULL	-	no_errors	IQCK	HGNC	ENSG00000174628	13	0	0	5	7	58.33	-	-	-	G	19775192	C	G	19775192	3	3	878	1	0	0	0	0	1	0	0	0	7867	739	26	4	515	4	IQCK	16	19775192	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	17492076	19775192	70579561	50	71713										
CRISPLD2	0	genome.wustl.edu	37	chr16	84884220	84884220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	cggttgtgctgtgaacacctGccggaagatgactgtctggg	15	9	1	3			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	16	84884220	84884220	G	T	SNP	CRISPLD2	ENST00000262424	human	ensembl	69_37n	1	known	missense	c.539	p.C180F	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196	63	0	0	36	4	10	-	-	-	T	84884220	G	T	84884220	3	4	878	1	0	0	0	0	1	0	0	0	3913	1319	46	4	553	4	CRISPLD2	16	84884220	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	65109028	84884220	5470533	51	71714										
PHF12	0	genome.wustl.edu	37	chr17	27238259	27238259	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggggctgaccttgccatctgGggacggagcaggaagactgt	17	9	1	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	17	27238259	27238259	G	T	SNP	PHF12	ENST00000579563	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PHF12	HGNC	ENSG00000109118	44	0	0	37	6	13.95	-	-	-	T	27238259	G	T	27238259	1	4	878	0	1	0	0	0	0	0	0	0	11897	1247	43	4		4	PHF12	17	27238259	RNA	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09		27238259	53956951	52	71715										
KRT28	0	genome.wustl.edu	37	chr17	38956060	38956060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	atgcactgctgcctgcaaagCctgcacctccattgaggggt	11	13	0	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	17	38956060	38956060	C	T	SNP	KRT28	ENST00000306658	human	ensembl	69_37n	-1	known	missense	c.86	p.G29D	0.973	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908	19	0	0	7	13	65	-	-	-	T	38956060	C	T	38956060	3	4	878	1	0	0	0	0	1	0	0	0	8518	739	26	4	1340	4	KRT28	17	38956060	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09	11717801	38956060	42239150	53	71716										
KRT13	0	genome.wustl.edu	37	chr17	39659292	39659292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gggtcaggtcaatgcctgggGtggcatccatctccacgttg	14	11	3	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	17	39659292	39659292	G	T	SNP	KRT13	ENST00000246635	human	ensembl	69_37n	-1	known	missense	c.794	p.T265N	0.108	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	29	0	0	14	12	46.15	-	-	-	T	39659292	G	T	39659292	3	4	878	1	0	0	0	0	1	0	0	0	8503	1261	44	4	602	4	KRT13	17	39659292	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	703232	39659292	41535918	54	71717										
SAFB	0	genome.wustl.edu	37	chr19	5653376	5653376	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	atgaacctgtgggaaagaaaAcctctgacaaaagagacagt	10	7	1	4			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	19	5653376	5653376	A	T	SNP	SAFB	ENST00000588852	human	ensembl	69_37n	1	known	missense	c.1471	p.T491S	0.802	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	21	0	0	13	14	51.85	-	-	-	T	5653376	A	T	5653376	3	4	878	1	0	0	0	0	1	0	0	0	13892	43	2	5	1513	5	SAFB	19	5653376	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09		5653376	53475607	55	71718										
CHERP	0	genome.wustl.edu	37	chr19	16641615	16641615	+	Frame_Shift_Del	DEL	C	C	-													0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ctgcttgtcttcctccacggCcaagaagctggtgcagtaga							TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	19	16641615	16641615	C	-	DEL	CHERP	ENST00000546361	human	ensembl	69_37n	-1	known	frame_shift_del	c.751	p.A251fs	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	70	0	0	52	14	20.9	-	-	-	-	16641615	C	-	16641615	7	5	878	1	0	1	0	1	0	0	0	0	3365	739	26	0	2047	0	CHERP	19	16641615	Frame_Shift_Del	DEL	C	TCGA-E9-A3HO-01A-11D-A20S-09	10988239	16641615	42487368	56	71719										
NWD1	0	genome.wustl.edu	37	chr19	16842052	16842052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agcactgcctaccctgaagtGccagaccttctgccagaggc	10	15	1	3			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	19	16842052	16842052	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.44	p.C15F	0.578	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	16	0	0	21	7	25	-	-	-	T	16842052	G	T	16842052	3	4	878	1	0	0	0	0	1	0	0	0	10854	1334	46	4		4	NWD1	19	16842052	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	200437	16842052	42286931	57	71720										
RYR1	0	genome.wustl.edu	37	chr19	38974020	38974020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ggctggagatgcagatgctgAtgccagtgtcctggagccgc	16	10	0	3			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	19	38974020	38974020	A	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.4798	p.M1600V	0.995	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	53	0	0	54	28	34.15	-	-	-	G	38974020	A	G	38974020	3	3	878	1	0	0	0	0	1	0	0	0	13854	333	12	5	4928	5	RYR1	19	38974020	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09	22131968	38974020	20154963	58	71721										
KLK10	0	genome.wustl.edu	37	chr19	51519314	51519314	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gcaggatggggcctgagcccTggtggtacttgggatggaca	18	8	0	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	19	51519314	51519314	T	C	SNP	KLK10	ENST00000309958	human	ensembl	69_37n	-1	known	missense	c.368	p.Q123R	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451	39	0	0	25	15	37.5	-	-	-	C	51519314	T	C	51519314	3	2	878	1	0	0	0	0	1	0	0	0	8451	1580	55	5	474	5	KLK10	19	51519314	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09	12545294	51519314	7609669	59	71722										
TRPC4AP	0	genome.wustl.edu	37	chr20	33645320	33645320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	ctaataggtatacttactttTcagtttctgtccccggatag	7	9	2	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	20	33645320	33645320	T	C	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	missense	c.469	p.K157E	1.000	NULL	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	99	0	0	74	41	35.65	-	-	-	C	33645320	T	C	33645320	3	2	878	1	0	0	0	0	1	0	0	0	16677	1792	62	5	1988	5	TRPC4AP	20	33645320	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09		33645320	29380200	60	71723										
RPRD1B	0	genome.wustl.edu	37	chr20	36718278	36718278	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	acctgttttcaactgactagGatgggtgtcatgtcccagat	10	9	2	2			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	20	36718278	36718278	G	C	SNP	RPRD1B	ENST00000471511	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RPRD1B	HGNC	ENSG00000101413	25	0	0	15	11	42.31	-	-	-	C	36718278	G	C	36718278	1	2	878	0	1	0	0	0	0	0	0	0	13702	1189	41	2		2	RPRD1B	20	36718278	RNA	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	3072958	36718278	26307242	61	71724										
HORMAD2	0	genome.wustl.edu	37	chr22	30494914	30494914	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gaagaaactttttgctacttCcatctcatgtataacatacc	4	10	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	22	30494914	30494914	C	T	SNP	HORMAD2	ENST00000336726	human	ensembl	69_37n	1	known	missense	c.125	p.S42F	0.959	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD2	HGNC	ENSG00000176635	38	0	0	10	16	61.54	-	-	-	T	30494914	C	T	30494914	3	4	878	1	0	0	0	0	1	0	0	0	7338	855	30	2	131	2	HORMAD2	22	30494914	Missense_Mutation	SNP	C	TCGA-E9-A3HO-01A-11D-A20S-09		30494914	20809652	62	71725										
SCML2	0	genome.wustl.edu	37	chrX	18278329	18278329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tacatggcccagaagcgacaTctttatataacatgccacgg	8	11	1	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	X	18278329	18278329	T	C	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.1031	p.D344G	0.005	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	65	0	0	35	19	35.19	-	-	-	C	18278329	T	C	18278329	3	2	878	1	0	0	0	0	1	0	0	0	13998	1435	50	5	1099	5	SCML2	23	18278329	Missense_Mutation	SNP	T	TCGA-E9-A3HO-01A-11D-A20S-09		18278329	136992231	63	71726										
GUCY2F	0	genome.wustl.edu	37	chrX	108635324	108635324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agccctttttgagagattcaGcaactgatctgaaaagcaga	9	8	2	5			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	X	108635324	108635324	G	A	SNP	GUCY2F	ENST00000218006	human	ensembl	69_37n	-1	known	missense	c.2597	p.A866V	1.000	pfam_Haem_no_assoc-bd,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890	21	0	0	16	4	20	-	-	-	A	108635324	G	A	108635324	3	1	878	1	0	0	0	0	1	0	0	0	6949	971	34	4	753	4	GUCY2F	23	108635324	Missense_Mutation	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	90356995	108635324	46635236	64	71727										
FRMD7	0	genome.wustl.edu	37	chrX	131220043	131220043	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	tgcttcctatctgtttcttcAtgaaagtctccaagttctgc	6	11	5	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	X	131220043	131220043	A	T	SNP	FRMD7	ENST00000298542	human	ensembl	69_37n	-1	known	missense	c.402	p.H134Q	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD7	HGNC	ENSG00000165694	34	0	0	17	10	37.04	-	-	-	T	131220043	A	T	131220043	3	4	878	1	0	0	0	0	1	0	0	0	6104	214	8	5	1770	5	FRMD7	23	131220043	Missense_Mutation	SNP	A	TCGA-E9-A3HO-01A-11D-A20S-09	22584719	131220043	24050517	65	71728										
PASD1	0	genome.wustl.edu	37	chrX	150832673	150832673	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	gtggacctggagttctcggtGgatcaggtggactcagtgga	17	7	3	0			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	X	150832673	150832673	G	T	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	1	known	silent	c.924	p.V308	0.005	NULL	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	35	0	0	21	3	12.5	-	-	-	T	150832673	G	T	150832673	2	4	878	1	0	0	0	0	0	0	0	1	11544	1335	47	4		4	PASD1	23	150832673	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	19612630	150832673	4437887	66	71729										
MPP1	0	genome.wustl.edu	37	chrX	154020090	154020090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0615384615384615	4	0.876436643075864	1.02032786885246	1.27540983606557	0.850273224043716	1	1	0	agaattctggccaccgtacaGgactgtttttcattcagctt	8	10	3	1			TCGA-E9-A3HO-01A-11D-A20S-09	TCGA-E9-A3HO-10A-02D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	76ac3cf6-352b-401d-b029-f523a9133fd9	e3be43c8-9ab3-48dd-b8e6-de5fa770d861	X	154020090	154020090	G	A	SNP	MPP1	ENST00000369534	human	ensembl	69_37n	-1	known	silent	c.279	p.S93	0.031	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP1	HGNC	ENSG00000130830	33	0	0	24	14	36.84	-	-	-	A	154020090	G	A	154020090	2	1	878	1	0	0	0	0	0	0	0	1	9805	987	35	4		4	MPP1	23	154020090	Silent	SNP	G	TCGA-E9-A3HO-01A-11D-A20S-09	3187417	154020090	1250470	67	71730										
CROCC	0	genome.wustl.edu	37	chr1	17264939	17264939	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gcggccctggagacagaggaTggagaggggctacagcagac	18	9	0	4			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	17264939	17264939	T	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.1335	p.D445	0.001	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	150	1	0.66	82	10	10.87	-	-	-	C	17264939	T	C	17264939	2	2	879	1	0	0	0	0	0	0	0	1	3923	1461	51	5		5	CROCC	1	17264939	Silent	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09		17264939	231985682	1	71731										
TRAPPC3	0	genome.wustl.edu	37	chr1	36614713	36614713	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	cgtcgttgttgttggcttagCacagagctgcactcaggcct	12	11	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	36614713	36614713	C	G	SNP	TRAPPC3	ENST00000497251	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	77	0	0	19	4	17.39	-	-	-	G	36614713	C	G	36614713	1	3	879	0	1	0	0	0	0	0	0	0	16556	725	25	4		4	TRAPPC3	1	36614713	RNA	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	19349774	36614713	212635908	2	71732										
C1orf87	0	genome.wustl.edu	37	chr1	60474375	60474375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	agcattctcagccctagccaCgtgtgaaacctcaggtcaga	9	13	3	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	60474375	60474375	C	T	SNP	C1orf87	ENST00000395552	human	ensembl	69_37n	-1	known	silent	c.39	p.T13	0.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598	59	0	0	20	3	13.04	-	-	-	T	60474375	C	T	60474375	2	4	879	1	0	0	0	0	0	0	0	1	2084	551	19	1		1	C1orf87	1	60474375	Silent	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	23859662	60474375	188776246	3	71733										
LPHN2	0	genome.wustl.edu	37	chr1	82432213	82432213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ccattgcagtgaactctcacGtcatttcagtttcaatcaat	5	11	5	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	82432213	82432213	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	1	known	missense	c.2257	p.V753I	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	49	0	0	24	9	27.27	-	-	-	A	82432213	G	A	82432213	3	1	879	1	0	0	0	0	1	0	0	0	8982	1145	40	1	2256	1	LPHN2	1	82432213	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	21957838	82432213	166818408	4	71734										
NCSTN	0	genome.wustl.edu	37	chr1	160326465	160326465	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tgttgtacagtatgccttggCaaatttgactggcacagtgg	12	7	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	160326465	160326465	C	T	SNP	NCSTN	ENST00000435149	human	ensembl	69_37n	1	known	nonsense	c.745	p.Q249*	1.000	NULL	pfam_Nicastrin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCSTN	HGNC	ENSG00000162736	166	0	0	90	30	25	-	-	-	T	160326465	C	T	160326465	4	4	879	1	0	0	0	0	0	1	0	0	10313	710	25	4	1773	4	NCSTN	1	160326465	Nonsense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	77894252	160326465	88924156	5	71735										
UHMK1	0	genome.wustl.edu	37	chr1	162493009	162493009	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tgtatgcttgagtgaatgtgCgagtatgaatgattagagaa	13	2	0	5			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	162493009	162493009	C	T	SNP	UHMK1	ENST00000282169	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.340	-	-	-	no_errors	UHMK1	HGNC	ENSG00000152332	91	0	0	42	6	12.5	-	-	-	T	162493009	C	T	162493009	1	4	879	0	1	0	0	0	0	0	0	0	17063	783	27	1		1	UHMK1	1	162493009	RNA	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	2166544	162493009	86757612	6	71736										
CR1L	0	genome.wustl.edu	37	chr1	207884105	207884105	+	RNA	SNP	C	C	A													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	aggccctgaacaaatgggagCcggagctaccaagctgctcc							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	207884105	207884105	C	A	SNP	CR1L	ENST00000530905	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	CR1L	HGNC	ENSG00000197721	112	1	0.88	45	10	18.18	-	-	-	A	207884105	C	A	207884105	1	1	879	0	1	0	0	0	0	0	0	0	3871	754	26	4		4	CR1L	1	207884105	RNA	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	45391096	207884105	41366516	7	71737	509	2								
CR1L	0	genome.wustl.edu	37	chr1	207884107	207884107	+	RNA	SNP	G	G	A													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gccctgaacaaatgggagccGgagctaccaagctgctccag							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	207884107	207884107	G	A	SNP	CR1L	ENST00000530905	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CR1L	HGNC	ENSG00000197721	109	1	0.91	44	9	16.98	-	-	-	A	207884107	G	A	207884107	1	1	879	0	1	0	0	0	0	0	0	0	3871	1131	39	1		1	CR1L	1	207884107	RNA	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	2	207884107	41366514	8	71738	509	2								
RYR2	0	genome.wustl.edu	37	chr1	237993724	237993724	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ctccatgtgatgatctttgaCgtgtattgagtgaaccaaat	9	7	1	5			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	237993724	237993724	C	T	SNP	RYR2	ENST00000462585	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RYR2	HGNC	ENSG00000198626	120	0	0	59	10	14.49	-	-	-	T	237993724	C	T	237993724	1	4	879	0	1	0	0	0	0	0	0	0	13855	551	19	1		1	RYR2	1	237993724	RNA	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	30109617	237993724	11256897	9	71739										
USP34	0	genome.wustl.edu	37	chr2	61622358	61622359	+	Frame_Shift_Del	DEL	GT	GT	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ctaatatgttactttcttgaGttgatatatcctaattaaaa							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	61622358	61622359	GT	-	DEL	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	frame_shift_del	c.563_562	p.T188fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	87	0	0	38	11	21.57	-	-	-	-	61622359	GT	-	61622358	7	5	879	1	0	1	0	1	0	0	0	0	17162	1029	36	0	10385	0	USP34	2	61622358	Frame_Shift_Del	DEL	GT	TCGA-E9-A3Q9-01A-11D-A21Q-09		61622358	181577015	10	71740										
C2orf15	0	genome.wustl.edu	37	chr2	99939031	99939031	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ggaagagacttacaagaatcAgaagtgcacacatggtgcca	11	8	1	3			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	99939031	99939031	A	G	SNP	C2orf15	ENST00000465095	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C2orf15	HGNC	ENSG00000241962	47	0	0	20	3	13.04	-	-	-	G	99939031	A	G	99939031	1	3	879	0	1	0	0	0	0	0	0	0	2176	203	7	5		5	C2orf15	2	99939031	RNA	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	38316673	99939031	143260342	11	71741										
UGGT1	0	genome.wustl.edu	37	chr2	128939819	128939819	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	cggctacaggttctggaagtCagggtactgggccagtcatt	14	9	3	0			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	128939819	128939819	C	G	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	nonsense	c.4199	p.S1400*	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	85	0	0	39	15	27.78	-	-	-	G	128939819	C	G	128939819	4	3	879	1	0	0	0	0	0	1	0	0	17038	838	29	2	4345	2	UGGT1	2	128939819	Nonsense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	29000788	128939819	114259554	12	71742										
ITGB6	0	genome.wustl.edu	37	chr2	160958145	160958145	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ctgcagatgtcctattattaTcttaaaccaacctcattttg	4	10	2	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	160958145	160958145	T	C	SNP	ITGB6	ENST00000475438	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ITGB6	HGNC	ENSG00000115221	35	0	0	13	3	18.75	-	-	-	C	160958145	T	C	160958145	1	2	879	0	1	0	0	0	0	0	0	0	7953	1450	50	5		5	ITGB6	2	160958145	RNA	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09	32018326	160958145	82241228	13	71743										
ARMC9	0	genome.wustl.edu	37	chr2	232070952	232070952	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	attaccagtaacagttcaatAtgggggacattctggctcat	9	8	3	0			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	232070952	232070952	A	G	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	1	known	missense	c.1	p.M1V	0.992	NULL	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	69	0	0	20	4	16.67	-	-	-	G	232070952	A	G	232070952	3	3	879	1	0	0	0	0	1	0	0	0	962	449	16	5	3	5	ARMC9	2	232070952	Missense_Mutation	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	71112807	232070952	11128421	14	71744										
EBLN2	0	genome.wustl.edu	37	chr3	73111481	73111482	+	Frame_Shift_Ins	INS	-	-	A													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ttgagctatctgggaaaaacINSagacagtatccactggatgc							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	73111481	73111482	-	A	INS	EBLN2	ENST00000533473	human	ensembl	69_37n	1	known	frame_shift_ins	c.249_250	p.R83fs	0.006:0.006	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423	45	0	0	23	3	11.54	-	-	-	A	73111482	-	A	73111481	7	5	879	1	0	1	1	0	0	0	0	0	4919	477	17	0	251	0	EBLN2	3	73111481	Frame_Shift_Ins	INS	-	TCGA-E9-A3Q9-01A-11D-A21Q-09		73111481	124910949	15	71745										
PEX5L	0	genome.wustl.edu	37	chr3	179597794	179597794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ccgtgctgatgaggtcagatCcatcggcctttttcttgagg	12	10	2	4			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	179597794	179597794	C	A	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.428	p.G143V	0.997	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	89	0	0	33	20	37.74	-	-	-	A	179597794	C	A	179597794	3	1	879	1	0	0	0	0	1	0	0	0	11823	855	30	2	1496	2	PEX5L	3	179597794	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	106486313	179597794	18424636	16	71746										
IQCG	0	genome.wustl.edu	37	chr3	197639381	197639381	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ctctctcaaattacagctatAtaagatatctattcagatgc	4	9	4	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	197639381	197639381	A	G	SNP	IQCG	ENST00000469822	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.104	-	-	-	no_errors	IQCG	HGNC	ENSG00000114473	33	0	0	16	6	27.27	-	-	-	G	197639381	A	G	197639381	1	3	879	0	1	0	0	0	0	0	0	0	7864	464	16	5		5	IQCG	3	197639381	RNA	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	18041587	197639381	383049	17	71747										
PAQR3	0	genome.wustl.edu	37	chr4	79838944	79838944	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ggagagttgtacagttttacGgaagtcaatcacaatcttca	9	7	4	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	4	79838944	79838944	G	A	SNP	PAQR3	ENST00000503343	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PAQR3	HGNC	ENSG00000163291	22	0	0	8	4	33.33	-	-	-	A	79838944	G	A	79838944	1	1	879	0	1	0	0	0	0	0	0	0	11509	1131	39	1		1	PAQR3	4	79838944	RNA	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		79838944	111315332	18	71748										
ADAM29	0	genome.wustl.edu	37	chr4	175897897	175897899	+	In_Frame_Del	DEL	AGG	AGG	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gggaatggtgttgttgaagaAggagaagagtgtgactgtgg							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	4	175897897	175897899	AGG	-	DEL	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	in_frame_del	c.1221_1223	p.G408in_frame_del	0.000:0.000:0.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	92	0	0	36	7	16.28	-	-	-	-	175897899	AGG	-	175897897	7	5	879	1	0	1	0	1	0	0	0	0	247	69	3	0	1223	0	ADAM29	4	175897897	In_Frame_Del	DEL	AGG	TCGA-E9-A3Q9-01A-11D-A21Q-09	96058953	175897897	15256379	19	71749										
DOK3	0	genome.wustl.edu	37	chr5	176936654	176936654	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ttcccgtccctccgtctagaGacagctgcaggccgggggga	14	14	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	5	176936654	176936654	G	C	SNP	DOK3	ENST00000357198	human	ensembl	69_37n	-1	known	missense	c.56	p.S19C	0.996	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	78	0	0	17	11	39.29	-	-	-	C	176936654	G	C	176936654	3	2	879	1	0	0	0	0	1	0	0	0	4733	942	33	2	1806	2	DOK3	5	176936654	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		176936654	3978606	20	71750										
ZNF292	0	genome.wustl.edu	37	chr6	87865299	87865299	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	aggtgcgtacgcgacggagcGgggtgtgaagatggcggacg	21	7	0	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	87865299	87865299	G	A	SNP	ZNF292	ENST00000369578	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF292	HGNC	ENSG00000188994	100	0	0	29	13	30.95	-	-	-	A	87865299	G	A	87865299	1	1	879	0	1	0	0	0	0	0	0	0	17922	1131	39	1		1	ZNF292	6	87865299	RNA	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		87865299	83249768	21	71751										
MDN1	0	genome.wustl.edu	37	chr6	90385864	90385864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	cgttaagcctggcatgccgtGcaagagagcgataaaaatac	11	9	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	90385864	90385864	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.12602	p.A4201V	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	36	0	0	22	4	15.38	-	-	-	A	90385864	G	A	90385864	3	1	879	1	0	0	0	0	1	0	0	0	9486	1319	46	4	4292	4	MDN1	6	90385864	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	2520565	90385864	80729203	22	71752										
ULBP2	0	genome.wustl.edu	37	chr6	150267527	150267527	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gaacccctcaccctgcaggcAaggatgtcttgtgagcagaa	11	12	2	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	150267527	150267527	A	C	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	1	known	silent	c.369	p.A123	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	137	1	0.72	51	7	12.07	-	-	-	C	150267527	A	C	150267527	2	2	879	1	0	0	0	0	0	0	0	1	17070	117	5	5		5	ULBP2	6	150267527	Silent	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	59881663	150267527	20847540	23	71753										
PDE10A	0	genome.wustl.edu	37	chr6	165801900	165801900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gctgttactgaagcccctgtGgtccaggtcatgacacagac	11	12	1	3			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	165801900	165801900	G	A	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.1699	p.H567Y	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	70	0	0	23	9	28.12	-	-	-	A	165801900	G	A	165801900	3	1	879	1	0	0	0	0	1	0	0	0	11703	1348	47	4	694	4	PDE10A	6	165801900	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	15534373	165801900	5313167	24	71754										
CAMK2B	0	genome.wustl.edu	37	chr7	44284564	44284564	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	caatccacaggccactggacAtggtgattttgccaacgtga	10	11	0	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	44284564	44284564	A	G	SNP	CAMK2B	ENST00000421607	human	ensembl	69_37n	-1	novel	silent	c.465	p.H155	0.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_stop_codon:bad_bp_length_for_coding_region	CAMK2B	HGNC	ENSG00000058404	72	0	0	32	4	11.11	-	-	-	G	44284564	A	G	44284564	2	3	879	1	0	0	0	0	0	0	0	1	2625	232	8	5		5	CAMK2B	7	44284564	Silent	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09		44284564	114854099	25	71755										
HIP1	0	genome.wustl.edu	37	chr7	75221831	75221831	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tggtgggtgcccagtatgcaCggtgagggggggttatggaa	20	5	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	75221831	75221831	C	T	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	silent	c.186	p.T62	0.048	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	40	0	0	18	8	30.77	-	-	-	T	75221831	C	T	75221831	2	4	879	1	0	0	0	0	0	0	0	1	7165	550	19	1		1	HIP1	7	75221831	Silent	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	30937267	75221831	83916832	26	71756										
PILRB	0	genome.wustl.edu	37	chr7	99950006	99950006	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gagaacagaggcacaggtgcCggccctgcagcccccagaac	13	15	0	3			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	99950006	99950006	C	T	SNP	PILRB	ENST00000470714	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PILRB	HGNC	ENSG00000121716	87	0	0	32	4	11.11	-	-	-	T	99950006	C	T	99950006	1	4	879	0	1	0	0	0	0	0	0	0	12000	667	23	1		1	PILRB	7	99950006	RNA	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	24728175	99950006	59188657	27	71757										
DDHD2	0	genome.wustl.edu	37	chr8	38111111	38111111	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	acctctgtggcagttaaagaAgaagtcctgcctatcaatgt	9	9	2	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	8	38111111	38111111	A	C	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	1	known	missense	c.1929	p.E643D	0.465	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	144	0	0	47	16	25.4	-	-	-	C	38111111	A	C	38111111	3	2	879	1	0	0	0	0	1	0	0	0	4358	69	3	5	2049	5	DDHD2	8	38111111	Missense_Mutation	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09		38111111	108252911	28	71758										
POP1	0	genome.wustl.edu	37	chr8	99146855	99146855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	acccttctgagagcaggcagCtgtggatctggctgcatcca	12	12	2	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	8	99146855	99146855	C	T	SNP	POP1	ENST00000349693	human	ensembl	69_37n	1	known	silent	c.979	p.L327	0.906	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	99	0	0	28	16	35.56	-	-	-	T	99146855	C	T	99146855	2	4	879	1	0	0	0	0	0	0	0	1	12325	796	28	4		4	POP1	8	99146855	Silent	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	61035744	99146855	47217167	29	71759										
CNTNAP3	0	genome.wustl.edu	37	chr9	39287976	39287976	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	taaaccatttgctgtacttaCgtggatttcctgctcccacg	7	12	0	0			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	39287976	39287976	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	splice_site	c.85+1	e1+1	0.729	-	-	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	80	0	0	25	4	13.79	-	-	-	T	39287976	C	T	39287976	5	4	879	1	0	0	0	0	0	0	1	0	3678	550	19	1	3876	1	CNTNAP3	9	39287976	Splice_Site	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		39287976	101925455	30	71760										
FAM75A6	0	genome.wustl.edu	37	chr9	43626820	43626820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tgtccctggtgattcgtcccGaagctgcatcagatccagag	11	12	1	3			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	43626820	43626820	G	C	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.1867	p.R623G	0.003	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	33	0	0	12	8	40	-	-	-	C	43626820	G	C	43626820	3	2	879	1	0	0	0	0	1	0	0	0	5667	1057	37	3	2168	3	FAM75A6	9	43626820	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	4338844	43626820	97586611	31	71761										
GKAP1	0	genome.wustl.edu	37	chr9	86354511	86354511	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gttgcttttagttccttcaaGaaaaactgcatagtttagca	7	7	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	86354511	86354511	G	C	SNP	GKAP1	ENST00000376362	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GKAP1	HGNC	ENSG00000165113	86	0	0	27	4	12.9	-	-	-	C	86354511	G	C	86354511	1	2	879	0	1	0	0	0	0	0	0	0	6475	957	33	2		2	GKAP1	9	86354511	RNA	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	42727691	86354511	54858920	32	71762										
RBP3	0	genome.wustl.edu	37	chr10	48382254	48382254	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tgctcttcttggagccatagCgttcacctggaagacataag	10	10	3	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	10	48382254	48382254	C	A	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.3395	p.R1132L	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	41	0	0	14	4	22.22	-	-	-	A	48382254	C	A	48382254	3	1	879	1	0	0	0	0	1	0	0	0	13240	768	27	3	352	3	RBP3	10	48382254	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		48382254	87152493	33	71763										
MUC5B	0	genome.wustl.edu	37	chr11	1271321	1271321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	agcagccactacaactgcagCcactggccccacggccaccc	8	20	0	0			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	1271321	1271321	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.13220	p.A4407G	0.042	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	130	0	0	39	7	15.22	-	-	-	G	1271321	C	G	1271321	3	3	879	1	0	0	0	0	1	0	0	0	10051	739	26	4	13342	4	MUC5B	11	1271321	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		1271321	133735195	34	71764										
KBTBD4	0	genome.wustl.edu	37	chr11	47597215	47597215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	taaagttgatccaggcttctAttgcctctgttgggttctga	10	8	3	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	47597215	47597215	A	G	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	missense	c.674	p.I225T	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	43	0	0	22	8	26.67	-	-	-	G	47597215	A	G	47597215	3	3	879	1	0	0	0	0	1	0	0	0	8049	449	16	5	938	5	KBTBD4	11	47597215	Missense_Mutation	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	46325894	47597215	87409301	35	71765										
PTPRJ	0	genome.wustl.edu	37	chr11	48142578	48142578	+	Frame_Shift_Del	DEL	A	A	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ccagtcctgtgtttgacattAaagctgtttccatcagtcca							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	48142578	48142578	A	-	DEL	PTPRJ	ENST00000418331	human	ensembl	69_37n	1	known	frame_shift_del	c.376	p.A127fs	0.545	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	30	0	0	8	2	20	-	-	-	-	48142578	A	-	48142578	7	5	879	1	0	1	0	1	0	0	0	0	12887	363	13	0	390	0	PTPRJ	11	48142578	Frame_Shift_Del	DEL	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	545363	48142578	86863938	36	71766										
C11orf92	0	genome.wustl.edu	37	chr11	111169268	111169268	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	aggcgctgagtccctgctgcTgcagcatccagccaccgacc	11	17	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	111169268	111169268	T	A	SNP	C11orf92	ENST00000526150	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf92	HGNC	ENSG00000196167	91	0	0	28	12	30	-	-	-	A	111169268	T	A	111169268	1	1	879	0	1	0	0	0	0	0	0	0	1683	1595	55	5		5	C11orf92	11	111169268	RNA	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09	63026690	111169268	23837248	37	71767										
OR6C68	0	genome.wustl.edu	37	chr12	55886699	55886699	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	atcattttggctgtgatgcaTtgcctattctgaaaatacca	7	8	2	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	12	55886699	55886699	T	C	SNP	OR6C68	ENST00000379662	human	ensembl	69_37n	1	known	silent	c.553	p.L185	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C68	HGNC	ENSG00000205327	80	0	0	30	11	26.83	-	-	-	C	55886699	T	C	55886699	2	2	879	1	0	0	0	0	0	0	0	1	11269	1490	52	5		5	OR6C68	12	55886699	Silent	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09		55886699	77965196	38	71768										
ELF1	0	genome.wustl.edu	37	chr13	41515071	41515071	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tctcacctaatactctgaacGgaagaatttaatgtttcatc	5	9	3	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	13	41515071	41515071	G	C	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	silent	c.1242	p.S414	0.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	149	0	0	47	28	37.33	-	-	-	C	41515071	G	C	41515071	2	2	879	1	0	0	0	0	0	0	0	1	5090	1103	39	3		3	ELF1	13	41515071	Silent	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		41515071	73654807	39	71769										
PPM1A	0	genome.wustl.edu	37	chr14	60749615	60749615	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gtatgatgggcatgctggttCtcaggttgccaaatactgct	12	8	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	14	60749615	60749615	C	G	SNP	PPM1A	ENST00000325642	human	ensembl	69_37n	1	known	missense	c.413	p.S138C	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1A	HGNC	ENSG00000100614	244	0	0	105	33	23.91	-	-	-	G	60749615	C	G	60749615	3	3	879	1	0	0	0	0	1	0	0	0	12412	913	32	2	419	2	PPM1A	14	60749615	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		60749615	46599925	40	71770										
PYGO1	0	genome.wustl.edu	37	chr15	55839191	55839191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	atgtactatagcctccaaagCcaggataaccagggccaaga	9	11	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	15	55839191	55839191	C	T	SNP	PYGO1	ENST00000302000	human	ensembl	69_37n	-1	known	missense	c.290	p.G97D	0.999	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016	56	0	0	19	4	17.39	-	-	-	T	55839191	C	T	55839191	3	4	879	1	0	0	0	0	1	0	0	0	12946	739	26	4	973	4	PYGO1	15	55839191	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		55839191	46692201	41	71771										
NFAT5	0	genome.wustl.edu	37	chr16	69687152	69687152	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ttctcagaacattggaaaacCaaaaaggaactggagtaaag	9	6	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	16	69687152	69687152	C	G	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	1	known	missense	c.826	p.Q276E	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	54	0	0	14	14	50	-	-	-	G	69687152	C	G	69687152	3	3	879	1	0	0	0	0	1	0	0	0	10432	595	21	4	844	4	NFAT5	16	69687152	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		69687152	20667601	42	71772										
SSH2	0	genome.wustl.edu	37	chr17	27993928	27993928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gtgtagggctatccatttgaCcaaggatcactatcatttca	8	9	3	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	27993928	27993928	C	T	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	missense	c.908	p.G303D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	85	0	0	32	8	20	-	-	-	T	27993928	C	T	27993928	3	4	879	1	0	0	0	0	1	0	0	0	15276	507	18	4	3387	4	SSH2	17	27993928	Missense_Mutation	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09		27993928	53201282	43	71773										
EIF1	0	genome.wustl.edu	37	chr17	39847716	39847716	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	agttaaacttttgacaagggAacaaatctcaaactgatcca	6	8	1	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	39847716	39847716	A	G	SNP	EIF1	ENST00000310837	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF1	HGNC	ENSG00000173812	53	0	0	15	6	28.57	-	-	-	G	39847716	A	G	39847716	1	3	879	0	1	0	0	0	0	0	0	0	5025	261	9	5		5	EIF1	17	39847716	RNA	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	11853788	39847716	41347494	44	71774										
GAST	0	genome.wustl.edu	37	chr17	39871711	39871711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gcagcgactgtgtgtgtatgTgctgatctttgcactggctc	13	9	1	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	39871711	39871711	T	C	SNP	GAST	ENST00000329402	human	ensembl	69_37n	1	known	missense	c.23	p.V8A	0.001	pfam_Gastrin	pfam_Gastrin,smart_Gastrin	-	no_errors	GAST	HGNC	ENSG00000184502	75	0	0	27	14	34.15	-	-	-	C	39871711	T	C	39871711	3	2	879	1	0	0	0	0	1	0	0	0	6302	1696	59	5	25	5	GAST	17	39871711	Missense_Mutation	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09	23995	39871711	41323499	45	71775										
FOXK2	0	genome.wustl.edu	37	chr17	80545148	80545148	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tccacggccaggtgaacaatGgtaagacatgctggtcggtg							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	80545148	80545148	G	-	DEL	FOXK2	ENST00000335255	human	ensembl	69_37n	1	known	frame_shift_del	c.1786	p.A596fs	0.980	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,prints_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568	32	0	0	9	2	18.18	-	-	-	-	80545148	G	-	80545148	7	5	879	1	0	1	0	1	0	0	0	0	6063	1362	47	0	1816	0	FOXK2	17	80545148	Frame_Shift_Del	DEL	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	40673437	80545148	650062	46	71776										
AP3D1	0	genome.wustl.edu	37	chr19	2120922	2120922	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ctcacagatcccgttccgctGggtgctgctggccagcaggt							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	2120922	2120922	G	-	DEL	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	frame_shift_del	c.1420	p.Q474fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	60	0	0	15	2	11.76	-	-	-	-	2120922	G	-	2120922	7	5	879	1	0	1	0	1	0	0	0	0	747	1357	47	0	2267	0	AP3D1	19	2120922	Frame_Shift_Del	DEL	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		2120922	57008061	47	71777										
MAP4K1	0	genome.wustl.edu	37	chr19	39104522	39104522	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ccgctgggcgccactcaccaGtagggtgtcccaatgaaaga	12	13	1	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	39104522	39104522	G	C	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	nonsense	c.531	p.Y177*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	55	0	0	9	4	30.77	-	-	-	C	39104522	G	C	39104522	4	2	879	1	0	0	0	0	0	1	0	0	9330	1024	36	4	2132	4	MAP4K1	19	39104522	Nonsense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	36983600	39104522	20024461	48	71778										
KPTN	0	genome.wustl.edu	37	chr19	47979891	47979891	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	agcaggggactggagaagctCcgctgccacagcagatggaa	15	10	0	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	47979891	47979891	C	A	SNP	KPTN	ENST00000338134	human	ensembl	69_37n	-1	known	silent	c.1080	p.R360	0.934	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162	72	0	0	17	7	29.17	-	-	-	A	47979891	C	A	47979891	2	1	879	1	0	0	0	0	0	0	0	1	8490	842	30	2		2	KPTN	19	47979891	Silent	SNP	C	TCGA-E9-A3Q9-01A-11D-A21Q-09	8875369	47979891	11149092	49	71779										
SIRPB2	0	genome.wustl.edu	37	chr20	1456906	1456906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	cagggctcctccgagaggtaGccagggccagtaggagtgca	16	11	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	1456906	1456906	G	T	SNP	SIRPB2	ENST00000359801	human	ensembl	69_37n	-1	known	missense	c.935	p.A312D	0.221	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIRPB2	HGNC	ENSG00000196209	52	0	0	23	12	34.29	-	-	-	T	1456906	G	T	1456906	3	4	879	1	0	0	0	0	1	0	0	0	14423	971	34	4	97	4	SIRPB2	20	1456906	Missense_Mutation	SNP	G	TCGA-E9-A3Q9-01A-11D-A21Q-09		1456906	61568614	50	71780										
ADAM33	0	genome.wustl.edu	37	chr20	3649431	3649431	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	ccagccctcaggaacttctaAtgtggctctgggttcctgga	11	12	3	0			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	3649431	3649431	A	G	SNP	ADAM33	ENST00000466620	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADAM33	HGNC	ENSG00000149451	117	0	0	29	4	12.12	-	-	-	G	3649431	A	G	3649431	1	3	879	0	1	0	0	0	0	0	0	0	250	116	4	5		5	ADAM33	20	3649431	RNA	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	2192525	3649431	59376089	51	71781										
ASXL1	0	genome.wustl.edu	37	chr20	31023332	31023332	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gctgctcccacccctcctgcAttgcctggggatttgacagc	10	16	0	1			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	31023332	31023332	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.2817	p.A939	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	51	0	0	12	11	47.83	-	-	-	G	31023332	A	G	31023332	2	3	879	1	0	0	0	0	0	0	0	1	1070	204	8	5		5	ASXL1	20	31023332	Silent	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09	27373901	31023332	32002188	52	71782										
NCOA6	0	genome.wustl.edu	37	chr20	33337587	33337587	+	Frame_Shift_Del	DEL	G	G	-													0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	cgttatttgctgtagtagcaGgatcaccatgctgctgggcc							TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	33337587	33337587	G	-	DEL	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	frame_shift_del	c.2411	p.P804fs	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	77	0	0	36	5	12.2	-	-	-	-	33337587	G	-	33337587	7	5	879	1	0	1	0	1	0	0	0	0	10305	1000	35	0	3808	0	NCOA6	20	33337587	Frame_Shift_Del	DEL	G	TCGA-E9-A3Q9-01A-11D-A21Q-09	2314255	33337587	29687933	53	71783										
NAGA	0	genome.wustl.edu	37	chr22	42428727	42428727	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gcctgaagagggtggggcagAcaaccatggactgctagaga	16	8	0	4			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	22	42428727	42428727	A	T	SNP	NAGA	ENST00000481068	human	ensembl	69_37n	-1	putative	missense	c.631	p.S211T	0.033	NULL	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAGA	HGNC	ENSG00000198951	36	0	0	14	4	22.22	-	-	-	T	42428727	A	T	42428727	3	4	879	1	0	0	0	0	1	0	0	0	10213	290	10	5		5	NAGA	22	42428727	Missense_Mutation	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09		42428727	8875839	54	71784										
CACNA1F	0	genome.wustl.edu	37	chrX	49071881	49071881	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	tgatgacgaagcccacgaagAtgttcatcatgaagaacgca	10	9	2	5			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	X	49071881	49071881	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.3392	p.I1131N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	100	0	0	18	7	28	-	-	-	T	49071881	A	T	49071881	3	4	879	1	0	0	0	0	1	0	0	0	2568	333	12	5	2625	5	CACNA1F	23	49071881	Missense_Mutation	SNP	A	TCGA-E9-A3Q9-01A-11D-A21Q-09		49071881	106198679	55	71785										
PHF8	0	genome.wustl.edu	37	chrX	54020225	54020225	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0727272727272727	4	0.855671264379963	1.06666666666667	2.66666666666667	0	0.0285714285714286	0.251737451737452	0	gggcagtgacagcctggacaTggacactgaagtggaatggg	17	7	0	2			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	X	54020225	54020225	T	C	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1543	p.M515V	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	130	0	0	53	7	11.67	-	-	-	C	54020225	T	C	54020225	3	2	879	1	0	0	0	0	1	0	0	0	11914	1464	51	5	1849	5	PHF8	23	54020225	Missense_Mutation	SNP	T	TCGA-E9-A3Q9-01A-11D-A21Q-09	4948344	54020225	101250335	56	71786										
IL22RA1	0	genome.wustl.edu	37	chr1	24469556	24469556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gggatcccacagtcaagatgGtcagcagcgtcctcatcggg	13	12	3	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	24469556	24469556	G	A	SNP	IL22RA1	ENST00000270800	human	ensembl	69_37n	-1	known	missense	c.17	p.T6I	1.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677	44	0	0	35	7	16.67	-	-	-	A	24469556	G	A	24469556	3	1	880	1	0	0	0	0	1	0	0	0	7727	1261	44	4	1735	4	IL22RA1	1	24469556	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		24469556	224781065	1	71787										
AKIRIN1	0	genome.wustl.edu	37	chr1	39463917	39463917	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	atttagaagttgttcttaatCagagtgaagcttgtgcttcg	10	5	2	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	39463917	39463917	C	G	SNP	AKIRIN1	ENST00000432648	human	ensembl	69_37n	1	known	missense	c.295	p.Q99E	1.000	NULL	NULL	-	no_errors	AKIRIN1	HGNC	ENSG00000174574	40	0	0	17	4	19.05	-	-	-	G	39463917	C	G	39463917	3	3	880	1	0	0	0	0	1	0	0	0	461	827	29	2	301	2	AKIRIN1	1	39463917	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	14994361	39463917	209786704	2	71788										
KTI12	0	genome.wustl.edu	37	chr1	52498476	52498476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aataaactggcgacgaaggcGactcagttctgccatggtca	11	10	3	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	52498476	52498476	G	A	SNP	KTI12	ENST00000371614	human	ensembl	69_37n	-1	known	missense	c.958	p.R320C	1.000	pfam_Chromatin_KTI12	pfam_Chromatin_KTI12	-	no_errors	KTI12	HGNC	ENSG00000198841	49	0	0	17	6	26.09	-	-	-	A	52498476	G	A	52498476	3	1	880	1	0	0	0	0	1	0	0	0	8638	1058	37	1	110	1	KTI12	1	52498476	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	13034559	52498476	196752145	3	71789										
ZNF326	0	genome.wustl.edu	37	chr1	90486421	90486421	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gcttgcagtgtttatatcccTgctttacatagttcagttca	7	9	2	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	90486421	90486421	T	A	SNP	ZNF326	ENST00000340281	human	ensembl	69_37n	1	known	silent	c.1245	p.P415	1.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664	39	0	0	25	5	16.67	-	-	-	A	90486421	T	A	90486421	2	1	880	1	0	0	0	0	0	0	0	1	17942	1567	55	5		5	ZNF326	1	90486421	Silent	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09	37987945	90486421	158764200	4	71790										
SLC35A3	0	genome.wustl.edu	37	chr1	100436152	100436152	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gatgcacccgaccagcacctGgagctcaagaagccgcagga	12	14	1	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	100436152	100436152	G	T	SNP	SLC35A3	ENST00000370153	human	ensembl	69_37n	1	known	silent	c.60	p.L20	0.000	NULL	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_DUF250,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A3	HGNC	ENSG00000117620	55	0	0	27	7	20.59	-	-	-	T	100436152	G	T	100436152	2	4	880	1	0	0	0	0	0	0	0	1	14661	1363	47	4		4	SLC35A3	1	100436152	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	9949731	100436152	148814469	5	71791										
ATXN7L2	0	genome.wustl.edu	37	chr1	110033786	110033786	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cgggagccaggctatcacctCaccactgcctgccaacacgc	9	18	2	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	110033786	110033786	C	T	SNP	ATXN7L2	ENST00000369870	human	ensembl	69_37n	1	known	missense	c.1601	p.S534L	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	35	0	0	19	5	20.83	-	-	-	T	110033786	C	T	110033786	3	4	880	1	0	0	0	0	1	0	0	0	1221	838	29	2	1639	2	ATXN7L2	1	110033786	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	9597634	110033786	139216835	6	71792										
CHD1L	0	genome.wustl.edu	37	chr1	146736198	146736198	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tttccaaggaagaggtgggaGattttattcaacgctaccag	11	7	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	146736198	146736198	G	C	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	missense	c.694	p.D232H	0.996	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	14	0	0	23	6	20.69	-	-	-	C	146736198	G	C	146736198	3	2	880	1	0	0	0	0	1	0	0	0	3353	942	33	2	720	2	CHD1L	1	146736198	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	36702412	146736198	102514423	7	71793										
THEM5	0	genome.wustl.edu	37	chr1	151819720	151819721	+	Frame_Shift_Ins	INS	-	-	C													0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aggcaggcaggggaggcaggINSaggcaggaggcaggcagggg							TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	151819720	151819721	-	C	INS	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_ins	c.659_658	p.S220fs	0.672:0.662	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	32	0	0	16	3	15.79	-	-	-	C	151819721	-	C	151819720	7	5	880	1	0	1	1	0	0	0	0	0	15954	1189	41	0		0	THEM5	1	151819720	Frame_Shift_Ins	INS	-	TCGA-E9-A3QA-01A-61D-A228-09	5083522	151819720	97430901	8	71794										
FCRL1	0	genome.wustl.edu	37	chr1	157771818	157771818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aaaggttgaaggaggctcctCctccagagggggccgacctg	15	11	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	157771818	157771818	C	T	SNP	FCRL1	ENST00000368176	human	ensembl	69_37n	-1	known	missense	c.773	p.G258E	0.999	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL1	HGNC	ENSG00000163534	37	0	0	20	4	16.67	-	-	-	T	157771818	C	T	157771818	3	4	880	1	0	0	0	0	1	0	0	0	5840	855	30	2	610	2	FCRL1	1	157771818	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	5952098	157771818	91478803	9	71795										
NAV1	0	genome.wustl.edu	37	chr1	201751995	201751995	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gagctgccaccaacccctctCaggtacccaatgtgggcagc	10	16	1	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	201751995	201751995	C	T	SNP	NAV1	ENST00000430015	human	ensembl	69_37n	1	novel	nonsense	c.1027	p.Q343*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAV1	HGNC	ENSG00000134369	17	0	0	12	9	42.86	-	-	-	T	201751995	C	T	201751995	4	4	880	1	0	0	0	0	0	1	0	0	10255	813	29	2	2434	2	NAV1	1	201751995	Nonsense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	43980177	201751995	47498626	10	71796										
OBSCN	0	genome.wustl.edu	37	chr1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ggtgcaggctgaggcaggggCcagtgccacgctgagctgcg	19	11	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	78	0	0	25	17	40.48	-	-	-	G	228430947	C	G	228430947	3	3	880	1	0	0	0	0	1	0	0	0	10885	739	26	4	3027	4	OBSCN	1	228430947	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	26678952	228430947	20819674	11	71797										
SLC4A1AP	0	genome.wustl.edu	37	chr2	27886672	27886672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tgaaggagcaacttcaccatCgccgcctacagacgccactg	9	15	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	2	27886672	27886672	C	T	SNP	SLC4A1AP	ENST00000326019	human	ensembl	69_37n	1	known	missense	c.53	p.S18L	0.000	NULL	pfam_FHA_dom,pfam_Ds-RNA-bd,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798	54	0	0	34	6	15	-	-	-	T	27886672	C	T	27886672	3	4	880	1	0	0	0	0	1	0	0	0	14742	893	31	1	55	1	SLC4A1AP	2	27886672	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09		27886672	215312701	12	71798										
THNSL2	0	genome.wustl.edu	37	chr2	88474771	88474771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cctttcttcccatccaggaaCatctggggacacaggaagtg	10	12	2	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	2	88474771	88474771	C	T	SNP	THNSL2	ENST00000324166	human	ensembl	69_37n	1	known	missense	c.422	p.T141I	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	52	0	0	42	8	16	-	-	-	T	88474771	C	T	88474771	3	4	880	1	0	0	0	0	1	0	0	0	15958	478	17	4	432	4	THNSL2	2	88474771	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	60588099	88474771	154724602	13	71799										
ANKRD36	0	genome.wustl.edu	37	chr2	97909714	97909714	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gacaaaaccaattaaaccggCtctcaaatcagcagaggtgg	9	10	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	2	97909714	97909714	C	G	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.4517	p.A1506G	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	92	0	0	55	11	16.67	-	-	-	G	97909714	C	G	97909714	3	3	880	1	0	0	0	0	1	0	0	0	664	797	28	4	4795	4	ANKRD36	2	97909714	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	9434943	97909714	145289659	14	71800										
PRPF40A	0	genome.wustl.edu	37	chr2	153520244	153520244	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gaactgattatcgccacaaaAtcttcaaaagtagtgtttac	6	8	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	2	153520244	153520244	A	G	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	silent	c.2013	p.D671	0.981	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	40	0	0	19	11	36.67	-	-	-	G	153520244	A	G	153520244	2	3	880	1	0	0	0	0	0	0	0	1	12652	98	4	5		5	PRPF40A	2	153520244	Silent	SNP	A	TCGA-E9-A3QA-01A-61D-A228-09	55610530	153520244	89679129	15	71801										
TTN	0	genome.wustl.edu	37	chr2	179464421	179464421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ccaccagtttgttgacatggGtgtcatagagaacaggttct	11	8	2	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	2	179464421	179464421	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.48503	p.T16168N	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	41	0	0	19	3	13.64	-	-	-	T	179464421	G	T	179464421	3	4	880	1	0	0	0	0	1	0	0	0	16832	1261	44	4	51782	4	TTN	2	179464421	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	25944177	179464421	63734952	16	71802										
ZCWPW2	0	genome.wustl.edu	37	chr3	28533663	28533663	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tgctgcactggtcaagaaaaGggtaagattgtgttttatta	11	4	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	3	28533663	28533663	G	T	SNP	ZCWPW2	ENST00000383768	human	ensembl	69_37n	1	known	missense	c.656	p.R219M	0.999	NULL	pfam_Znf_CW,pfam_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559	34	0	0	21	3	12.5	-	-	-	T	28533663	G	T	28533663	3	4	880	1	0	0	0	0	1	0	0	0	17694	1014	35	4	670	4	ZCWPW2	3	28533663	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		28533663	169488767	17	71803										
CRYBG3	0	genome.wustl.edu	37	chr3	97593629	97593629	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gacctcaaaagtagtttactCaaaaaggccgatacattgat	7	8	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	3	97593629	97593629	C	G	SNP	CRYBG3	ENST00000419587	human	ensembl	69_37n	1	known	silent	c.3591	p.L1197	0.339	NULL	NULL	-	no_stop_codon	AC110491.1	Clone_based_ensembl_gene	ENSG00000233280	25	0	0	10	4	28.57	-	-	-	G	97593629	C	G	97593629	2	3	880	1	0	0	0	0	0	0	0	1	3943	841	29	2		2	CRYBG3	3	97593629	Silent	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	69059966	97593629	100428801	18	71804										
KIAA1524	0	genome.wustl.edu	37	chr3	108271220	108271220	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cttttgttttttgatgcaaaTcttaaaagaaaaaaaagtca	5	4	2	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	3	108271220	108271220	T	G	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	missense	c.2408	p.N803T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	67	0	0	62	10	13.89	-	-	-	G	108271220	T	G	108271220	3	3	880	1	0	0	0	0	1	0	0	0	8291	1449	50	5	317	5	KIAA1524	3	108271220	Missense_Mutation	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09	10677591	108271220	89751210	19	71805										
PARP15	0	genome.wustl.edu	37	chr3	122329393	122329393	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tcttcagcttggaggaggacCactatctcgggcatttttgc	11	10	3	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	3	122329393	122329393	C	A	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	1	known	missense	c.359	p.P120Q	0.000	pfam_A1pp,smart_A1pp,pfscan_A1pp	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	90	0	0	44	18	29.03	-	-	-	A	122329393	C	A	122329393	3	1	880	1	0	0	0	0	1	0	0	0	11532	594	21	4	369	4	PARP15	3	122329393	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	14058173	122329393	75693037	20	71806										
NUP155	0	genome.wustl.edu	37	chr5	37358219	37358219	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aagccccacagcaagaatagTctcactaagtccatcaaaat	5	12	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	5	37358219	37358219	T	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.427	p.T143P	1.000	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	34	0	0	26	11	29.73	-	-	-	G	37358219	T	G	37358219	3	3	880	1	0	0	0	0	1	0	0	0	10829	1667	58	5	3876	5	NUP155	5	37358219	Missense_Mutation	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09		37358219	143557041	21	71807										
BRD2	0	genome.wustl.edu	37	chr6	32948215	32948215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agatgtcagcggacagctcaAttctactaaaaagcccccca	7	13	3	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	6	32948215	32948215	A	G	SNP	BRD2	ENST00000395289	human	ensembl	69_37n	1	known	missense	c.2348	p.N783S	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256	28	0	0	12	4	25	-	-	-	G	32948215	A	G	32948215	3	3	880	1	0	0	0	0	1	0	0	0	1510	101	4	5	2285	5	BRD2	6	32948215	Missense_Mutation	SNP	A	TCGA-E9-A3QA-01A-61D-A228-09		32948215	138166852	22	71808										
GPR116	0	genome.wustl.edu	37	chr6	46826492	46826492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	attcactatgcaggtgtggcGcatataagaagtccggttct	11	8	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	6	46826492	46826492	G	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.3148	p.R1050C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	56	0	0	24	4	14.29	-	-	-	A	46826492	G	A	46826492	3	1	880	1	0	0	0	0	1	0	0	0	6683	1087	38	1	912	1	GPR116	6	46826492	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	13878277	46826492	124288575	23	71809										
UTRN	0	genome.wustl.edu	37	chr6	144772626	144772626	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tccgaaatgaaaaagaagttGaaggtaaaaaacataaacca	7	5	0	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	6	144772626	144772626	G	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	silent	c.2193	p.L731	0.981	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	24	0	0	15	4	21.05	-	-	-	A	144772626	G	A	144772626	2	1	880	1	0	0	0	0	0	0	0	1	17200	1281	45	2		2	UTRN	6	144772626	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	97946134	144772626	26342441	24	71810										
FAM200A	0	genome.wustl.edu	37	chr7	99145135	99145135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gagaaagccaacgaacttctGtatgaaacaataagtgggtg	11	6	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	7	99145135	99145135	G	A	SNP	FAM200A	ENST00000449309	human	ensembl	69_37n	-1	known	missense	c.896	p.T299I	0.893	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	FAM200A	HGNC	ENSG00000221909	31	0	0	12	3	20	-	-	-	A	99145135	G	A	99145135	3	1	880	1	0	0	0	0	1	0	0	0	5578	1377	48	4	829	4	FAM200A	7	99145135	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		99145135	59993528	25	71811										
ZKSCAN1	0	genome.wustl.edu	37	chr7	99631563	99631563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agagctcggacctcaccaagCatcagagaattcacacgggg	11	12	3	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	7	99631563	99631563	C	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	1	known	missense	c.1435	p.H479N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	37	0	0	24	3	11.11	-	-	-	A	99631563	C	A	99631563	3	1	880	1	0	0	0	0	1	0	0	0	17782	710	25	4	1453	4	ZKSCAN1	7	99631563	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	486428	99631563	59507100	26	71812										
SLC26A5	0	genome.wustl.edu	37	chr7	103051953	103051953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	tgtgccattggttgcatttaCtcctcctggaatgactatat	8	9	0	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	7	103051953	103051953	C	T	SNP	SLC26A5	ENST00000306312	human	ensembl	69_37n	-1	known	missense	c.484	p.V162I	0.512	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615	86	0	0	43	10	18.87	-	-	-	T	103051953	C	T	103051953	3	4	880	1	0	0	0	0	1	0	0	0	14609	565	20	4	1851	4	SLC26A5	7	103051953	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	3420390	103051953	56086710	27	71813										
POT1	0	genome.wustl.edu	37	chr7	124481138	124481138	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agtggtccagatttttgaatCatataatgatgtattttgta	8	3	1	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	7	124481138	124481138	C	T	SNP	POT1	ENST00000357628	human	ensembl	69_37n	-1	known	missense	c.1258	p.D420N	0.998	NULL	pfam_Telomer_end-bd,superfamily_NA-bd_OB-fold-like,smart_Telomer_end-bd	-	no_errors	POT1	HGNC	ENSG00000128513	47	0	0	35	4	10.26	-	-	-	T	124481138	C	T	124481138	3	4	880	1	0	0	0	0	1	0	0	0	12334	826	29	2	670	2	POT1	7	124481138	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	21429185	124481138	34657525	28	71814										
TLR4	0	genome.wustl.edu	37	chr9	120476753	120476753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agaccctgctcaggcagcagGtggagctgtaccgccttctc	12	14	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	9	120476753	120476753	G	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.2347	p.V783L	1.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	35	0	0	13	3	18.75	-	-	-	T	120476753	G	T	120476753	3	4	880	1	0	0	0	0	1	0	0	0	16048	1261	44	4	2357	4	TLR4	9	120476753	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		120476753	20736678	29	71815										
NUP214	0	genome.wustl.edu	37	chr9	134010374	134010374	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agacagcatcattactacctCagttacattgaggaatggtg	9	8	2	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	9	134010374	134010374	C	T	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	1	known	silent	c.921	p.L307	0.994	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	29	0	0	15	3	16.67	-	-	-	T	134010374	C	T	134010374	2	4	880	1	0	0	0	0	0	0	0	1	10835	813	29	2		2	NUP214	9	134010374	Silent	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	13533621	134010374	7203057	30	71816										
CARD9	0	genome.wustl.edu	37	chr9	139261779	139261779	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ccaggcacagggtgggcaggGcacagagcgggatcctccag	17	12	0	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	9	139261779	139261779	G	T	SNP	CARD9	ENST00000460290	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CARD9	HGNC	ENSG00000187796	38	0	0	10	3	23.08	-	-	-	T	139261779	G	T	139261779	1	4	880	0	1	0	0	0	0	0	0	0	2677	1218	42	4		4	CARD9	9	139261779	RNA	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	5251405	139261779	1951652	31	71817										
YME1L1	0	genome.wustl.edu	37	chr10	27425310	27425310	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ttaaaaccccgagactgtatGaaaactaaataaaacaatac	4	8	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	10	27425310	27425310	G	A	SNP	YME1L1	ENST00000326799	human	ensembl	69_37n	-1	known	silent	c.606	p.F202	0.997	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758	13	0	0	14	4	22.22	-	-	-	A	27425310	G	A	27425310	2	1	880	1	0	0	0	0	0	0	0	1	17584	1281	45	2		2	YME1L1	10	27425310	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		27425310	108109437	32	71818										
SH2D4B	0	genome.wustl.edu	37	chr10	82406062	82406062	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gatgagttgagaccctgaatCcctgggctgttgttcctgtc	12	10	0	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	10	82406062	82406062	C	A	SNP	SH2D4B	ENST00000372150	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SH2D4B	HGNC	ENSG00000178217	28	0	0	26	4	13.33	-	-	-	A	82406062	C	A	82406062	1	1	880	0	1	0	0	0	0	0	0	0	14324	870	30	2		2	SH2D4B	10	82406062	RNA	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	54980752	82406062	53128685	33	71819										
SFXN3	0	genome.wustl.edu	37	chr10	102794460	102794460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gtcctgcagaaaatgggtgaAttgcctttagacatcaacat	9	8	1	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	10	102794460	102794460	A	G	SNP	SFXN3	ENST00000224807	human	ensembl	69_37n	1	known	silent	c.21	p.E7	0.110	NULL	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN3	HGNC	ENSG00000107819	22	0	0	16	5	23.81	-	-	-	G	102794460	A	G	102794460	2	3	880	1	0	0	0	0	0	0	0	1	14284	98	4	5		5	SFXN3	10	102794460	Silent	SNP	A	TCGA-E9-A3QA-01A-61D-A228-09	20388398	102794460	32740287	34	71820										
PNLIP	0	genome.wustl.edu	37	chr10	118321027	118321027	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ctcattccaatgaatttgacTcagatgtggatgttggggac	11	7	2	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	10	118321027	118321027	T	A	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	1	known	missense	c.1213	p.S405T	1.000	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	49	0	0	37	6	13.95	-	-	-	A	118321027	T	A	118321027	3	1	880	1	0	0	0	0	1	0	0	0	12223	1551	54	5	1255	5	PNLIP	10	118321027	Missense_Mutation	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09	15526567	118321027	17213720	35	71821										
OAT	0	genome.wustl.edu	37	chr10	126097424	126097424	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	taaggtcaatttgtccacttGactcttcagagcattcacaa	6	10	4	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	10	126097424	126097424	G	C	SNP	OAT	ENST00000368845	human	ensembl	69_37n	-1	known	missense	c.310	p.Q104E	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Orn_aminotrans	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Orn_aminotrans	-	no_errors	OAT	HGNC	ENSG00000065154	63	0	0	36	5	12.2	-	-	-	C	126097424	G	C	126097424	3	2	880	1	0	0	0	0	1	0	0	0	10876	1299	45	2	1041	2	OAT	10	126097424	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	7776397	126097424	9437323	36	71822										
MUC6	0	genome.wustl.edu	37	chr11	1015812	1015812	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aagataccggggcagaagcaGgggtgcttccatgggcagtg	17	8	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	1015812	1015812	G	T	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.6989	p.P2330H	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	55	0	0	21	3	12.5	-	-	-	T	1015812	G	T	1015812	3	4	880	1	0	0	0	0	1	0	0	0	10052	1000	35	4	342	4	MUC6	11	1015812	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		1015812	133990704	37	71823										
PGAP2	0	genome.wustl.edu	37	chr11	3819179	3819179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gactcgggctgagggagctcGggccaatcagagggacggcc	18	11	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	3819179	3819179	G	T	SNP	PGAP2	ENST00000300730	human	ensembl	69_37n	1	known	missense	c.106	p.G36W	0.847	NULL	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985	83	0	0	31	7	18.42	-	-	-	T	3819179	G	T	3819179	3	4	880	1	0	0	0	0	1	0	0	0	11852	1116	39	3	108	3	PGAP2	11	3819179	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	2803367	3819179	131187337	38	71824										
DNHD1	0	genome.wustl.edu	37	chr11	6587993	6587993	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gcaaggctgtggaggctgctGaggtgcttgggggctcagtc	19	8	1	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	6587993	6587993	G	T	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	1	known	nonsense	c.11383	p.E3795*	1.000	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	69	0	0	30	4	11.76	-	-	-	T	6587993	G	T	6587993	4	4	880	1	0	0	0	0	0	1	0	0	4703	1291	45	2	11522	2	DNHD1	11	6587993	Nonsense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	2768814	6587993	128418523	39	71825										
LDHA	0	genome.wustl.edu	37	chr11	18418471	18418471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ataagattacagttgttgggGttggtgctgttggcatggcc	15	5	0	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	18418471	18418471	G	A	SNP	LDHA	ENST00000540430	human	ensembl	69_37n	1	known	missense	c.169	p.V57I	1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333	43	0	0	28	7	20	-	-	-	A	18418471	G	A	18418471	3	1	880	1	0	0	0	0	1	0	0	0	8752	1261	44	4	175	4	LDHA	11	18418471	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	11830478	18418471	116588045	40	71826										
PGM2L1	0	genome.wustl.edu	37	chr11	74058248	74058248	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	taacggtagaaaagtctggaTcaggatctttttgttctggt	11	5	4	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	74058248	74058248	T	C	SNP	PGM2L1	ENST00000298198	human	ensembl	69_37n	-1	known	missense	c.884	p.D295G	1.000	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III	-	no_errors	PGM2L1	HGNC	ENSG00000165434	42	0	0	23	11	32.35	-	-	-	C	74058248	T	C	74058248	3	2	880	1	0	0	0	0	1	0	0	0	11873	1435	50	5	1016	5	PGM2L1	11	74058248	Missense_Mutation	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09	55639777	74058248	60948268	41	71827										
SLC35F2	0	genome.wustl.edu	37	chr11	107663400	107663400	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cagcttcagccccaggttgtCaatcccaatgctggtgactg	10	13	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	11	107663400	107663400	C	T	SNP	SLC35F2	ENST00000429869	human	ensembl	69_37n	-1	known	missense	c.1066	p.D356N	0.970	pfam_DUF914_euk	pfam_DUF914_euk,pfam_DMT,pfam_UAA,pfam_DUF250	-	no_errors	SLC35F2	HGNC	ENSG00000110660	46	0	0	17	3	15	-	-	-	T	107663400	C	T	107663400	3	4	880	1	0	0	0	0	1	0	0	0	14678	826	29	2	62	2	SLC35F2	11	107663400	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	33605152	107663400	27343116	42	71828										
XPOT	0	genome.wustl.edu	37	chr12	64812752	64812752	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agtatctcactaagtggcccAagtttttttttgacattctc	6	9	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	12	64812752	64812752	A	C	SNP	XPOT	ENST00000332707	human	ensembl	69_37n	1	known	missense	c.367	p.K123Q	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	50	0	0	39	7	15.22	-	-	-	C	64812752	A	C	64812752	3	2	880	1	0	0	0	0	1	0	0	0	17547	131	5	5	385	5	XPOT	12	64812752	Missense_Mutation	SNP	A	TCGA-E9-A3QA-01A-61D-A228-09		64812752	69039143	43	71829										
TRIAP1	0	genome.wustl.edu	37	chr12	120882702	120882702	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gaattttcaggcttttctttGccatggcccatgaactccag	8	11	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	12	120882702	120882702	G	T	SNP	TRIAP1	ENST00000546954	human	ensembl	69_37n	-1	known	silent	c.204	p.G68	1.000	pfam_MDM35_apoptosis	pfam_MDM35_apoptosis	-	no_errors	TRIAP1	HGNC	ENSG00000170855	34	0	0	16	3	15.79	-	-	-	T	120882702	G	T	120882702	2	4	880	1	0	0	0	0	0	0	0	1	16577	1306	46	4		4	TRIAP1	12	120882702	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	56069950	120882702	12969193	44	71830										
KDM2B	0	genome.wustl.edu	37	chr12	121868126	121868126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	caggagtttttcttctacttGcccaaactggacactcacag	7	12	3	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	12	121868126	121868126	G	T	SNP	KDM2B	ENST00000377071	human	ensembl	69_37n	-1	known	missense	c.3976	p.Q1326K	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094	45	0	0	26	3	10.34	-	-	-	T	121868126	G	T	121868126	3	4	880	1	0	0	0	0	1	0	0	0	8179	1328	46	4	90	4	KDM2B	12	121868126	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	985424	121868126	11983769	45	71831										
DMXL2	0	genome.wustl.edu	37	chr15	51780803	51780803	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aaggtagaatagtgcagcatCtaaggcatcattgttccttt	9	7	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	15	51780803	51780803	C	G	SNP	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	missense	c.4993	p.D1665H	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	50	0	0	21	4	16	-	-	-	G	51780803	C	G	51780803	3	3	880	1	0	0	0	0	1	0	0	0	4631	913	32	2	4212	2	DMXL2	15	51780803	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09		51780803	50750589	46	71832										
FAHD1	0	genome.wustl.edu	37	chr16	1877569	1877569	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gacgtgcaggacgagtgcaaGaagaaggggctgccctggac	17	9	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	16	1877569	1877569	G	C	SNP	FAHD1	ENST00000382666	human	ensembl	69_37n	1	known	missense	c.339	p.K113N	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD1	HGNC	ENSG00000180185	60	0	0	36	5	11.9	-	-	-	C	1877569	G	C	1877569	3	2	880	1	0	0	0	0	1	0	0	0	5412	933	33	2	341	2	FAHD1	16	1877569	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		1877569	88477184	47	71833										
IL4R	0	genome.wustl.edu	37	chr16	27374149	27374149	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gagacgcccctcgtcatcgcAggcaaccctgcttaccgcag	10	17	1	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	16	27374149	27374149	A	T	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	silent	c.1476	p.A492	0.001	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	26	0	0	15	6	28.57	-	-	-	T	27374149	A	T	27374149	2	4	880	1	0	0	0	0	0	0	0	1	7752	175	7	5		5	IL4R	16	27374149	Silent	SNP	A	TCGA-E9-A3QA-01A-61D-A228-09	25496580	27374149	62980604	48	71834										
NLRC5	0	genome.wustl.edu	37	chr16	57095775	57095775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ctgtccatctgtcccagagaCtccacaaggcacacagagaa	8	14	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	16	57095775	57095775	C	T	SNP	NLRC5	ENST00000538805	human	ensembl	69_37n	1	putative	missense	c.3412	p.L1138F	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	56	0	0	30	4	11.76	-	-	-	T	57095775	C	T	57095775	3	4	880	1	0	0	0	0	1	0	0	0	10542	580	20	4		4	NLRC5	16	57095775	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	29721626	57095775	33258978	49	71835										
KDM6B	0	genome.wustl.edu	37	chr17	7752915	7752915	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gaggggccccccaaggagctGaagatccggctcatcaaggt	14	12	2	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	7752915	7752915	G	A	SNP	KDM6B	ENST00000254846	human	ensembl	69_37n	1	known	silent	c.3309	p.L1103	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510	72	0	0	32	5	13.51	-	-	-	A	7752915	G	A	7752915	2	1	880	1	0	0	0	0	0	0	0	1	8191	1277	45	2		2	KDM6B	17	7752915	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		7752915	73442295	50	71836										
FBXW10	0	genome.wustl.edu	37	chr17	18668054	18668054	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cttttggcctgattcctgcaGatactgggatctgaaaagtg	11	8	1	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	18668054	18668054	G	C	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	1	known	splice_site	c.1521-1	e7-1	1.000	-	-	-	no_errors	FBXW10	HGNC	ENSG00000171931	61	0	0	36	5	12.2	-	-	-	C	18668054	G	C	18668054	5	2	880	1	0	0	0	0	0	0	1	0	5809	956	33	2	1463	2	FBXW10	17	18668054	Splice_Site	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	10915139	18668054	62527156	51	71837										
NF1	0	genome.wustl.edu	37	chr17	29541468	29541468	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	atgtttttgttttgtttttaGagtcttacatttaaagaaaa	6	2	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	29541468	29541468	G	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	splice_site	c.1393-1	e13-1	1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	167	0	0	118	17	12.59	-	-	-	C	29541468	G	C	29541468	5	2	880	1	0	0	0	0	0	0	1	0	10428	956	33	2	1442	2	NF1	17	29541468	Splice_Site	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	10873414	29541468	51653742	52	71838										
EPN3	0	genome.wustl.edu	37	chr17	48616614	48616614	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	caggggccgtggtccaccatCagcgggacagagagcctgag	16	12	1	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	48616614	48616614	C	T	SNP	EPN3	ENST00000537145	human	ensembl	69_37n	1	known	nonsense	c.913	p.Q305*	0.003	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283	46	0	0	13	6	31.58	-	-	-	T	48616614	C	T	48616614	4	4	880	1	0	0	0	0	0	1	0	0	5224	827	29	2	843	2	EPN3	17	48616614	Nonsense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	19075146	48616614	32578596	53	71839										
SPATA20	0	genome.wustl.edu	37	chr17	48628511	48628511	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	caggcccggaagcatcggccCaagccgcacctggacagcaa	12	16	0	0			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	69_37n	1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282	60	0	0	11	13	54.17	-	-	-	A	48628511	C	A	48628511	2	1	880	1	0	0	0	0	0	0	0	1	15097	581	21	4		4	SPATA20	17	48628511	Silent	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	11897	48628511	32566699	54	71840										
PSMD12	0	genome.wustl.edu	37	chr17	65353563	65353563	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gaagcctgtaagggtaaaaaTatattgaaagttaatggaag	11	2	0	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	65353563	65353563	T	C	SNP	PSMD12	ENST00000581618	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSMD12	HGNC	ENSG00000197170	42	0	0	27	5	15.62	-	-	-	C	65353563	T	C	65353563	1	2	880	0	1	0	0	0	0	0	0	0	12775	1421	49	5		5	PSMD12	17	65353563	RNA	SNP	T	TCGA-E9-A3QA-01A-61D-A228-09	16725052	65353563	15841647	55	71841										
RNF213	0	genome.wustl.edu	37	chr17	78265433	78265433	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	ctgttcattcacagagacttGggtcatgaccgcgttcttgt	10	10	4	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	17	78265433	78265433	G	T	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.1278	p.L426F	0.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	60	0	0	42	27	39.13	-	-	-	T	78265433	G	T	78265433	3	4	880	1	0	0	0	0	1	0	0	0	13563	1339	47	4	1455	4	RNF213	17	78265433	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	12911870	78265433	2929777	56	71842										
ZNF383	0	genome.wustl.edu	37	chr19	37726901	37726901	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gactttacactcctaagcctCaagtgatctccttattggaa	6	11	2	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	19	37726901	37726901	C	G	SNP	ZNF383	ENST00000352998	human	ensembl	69_37n	1	known	missense	c.157	p.Q53E	0.998	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF383	HGNC	ENSG00000188283	92	0	0	58	17	22.37	-	-	-	G	37726901	C	G	37726901	3	3	880	1	0	0	0	0	1	0	0	0	17970	827	29	2	167	2	ZNF383	19	37726901	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09		37726901	21402082	57	71843										
MAVS	0	genome.wustl.edu	37	chr20	3846420	3846420	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	agaataggggccttgggtcgGagctgagtaagcctggcgtg	18	7	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	20	3846420	3846420	G	C	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	missense	c.1249	p.E417Q	0.845	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	67	0	0	41	12	22.64	-	-	-	C	3846420	G	C	3846420	3	2	880	1	0	0	0	0	1	0	0	0	9409	1175	41	2	1271	2	MAVS	20	3846420	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		3846420	59179100	58	71844										
LPIN3	0	genome.wustl.edu	37	chr20	39977448	39977448	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	aagaggatgcagtggcaactGattctagtccagaggaactg	13	7	1	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	20	39977448	39977448	G	C	SNP	LPIN3	ENST00000373257	human	ensembl	69_37n	1	known	missense	c.478	p.D160H	0.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793	41	0	0	21	4	16	-	-	-	C	39977448	G	C	39977448	3	2	880	1	0	0	0	0	1	0	0	0	8986	1290	45	2	488	2	LPIN3	20	39977448	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	36131028	39977448	23048072	59	71845										
PIGT	0	genome.wustl.edu	37	chr20	44049193	44049193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cgagacattagaggtgcaccCacccccgaccactacatatc	7	16	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	20	44049193	44049193	C	T	SNP	PIGT	ENST00000279036	human	ensembl	69_37n	1	known	missense	c.893	p.P298L	0.999	pfam_Gpi16	pfam_Gpi16	-	no_errors	PIGT	HGNC	ENSG00000124155	62	0	0	52	8	13.33	-	-	-	T	44049193	C	T	44049193	3	4	880	1	0	0	0	0	1	0	0	0	11973	594	21	4	923	4	PIGT	20	44049193	Missense_Mutation	SNP	C	TCGA-E9-A3QA-01A-61D-A228-09	4071745	44049193	18976327	60	71846										
CELSR1	0	genome.wustl.edu	37	chr22	46859789	46859789	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gccggaagagcacggtggtgGagctgaggaagggcgcggag	22	7	0	2			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	22	46859789	46859789	G	C	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.3998	p.S1333C	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	64	0	0	33	4	10.81	-	-	-	C	46859789	G	C	46859789	3	2	880	1	0	0	0	0	1	0	0	0	3250	1174	41	2	5182	2	CELSR1	22	46859789	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		46859789	4444777	61	71847										
RBM10	0	genome.wustl.edu	37	chrX	47028777	47028777	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	cgctcgcaggatgatggtggGgagaaccgcagccgagacca	16	11	0	3			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	X	47028777	47028777	G	A	SNP	RBM10	ENST00000377604	human	ensembl	69_37n	1	known	silent	c.81	p.G27	0.998	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	126	0	0	45	7	13.46	-	-	-	A	47028777	G	A	47028777	2	1	880	1	0	0	0	0	0	0	0	1	13194	1219	43	4		4	RBM10	23	47028777	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09		47028777	108241783	62	71848										
WNK3	0	genome.wustl.edu	37	chrX	54337560	54337560	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gggtcaacttacgtctttaaGgtcccagatgtcattagttc	9	9	3	1			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	X	54337560	54337560	G	T	SNP	WNK3	ENST00000354646	human	ensembl	69_37n	-1	known	silent	c.702	p.T234	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	113	0	0	64	9	12.33	-	-	-	T	54337560	G	T	54337560	2	4	880	1	0	0	0	0	0	0	0	1	17476	987	35	4		4	WNK3	23	54337560	Silent	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	7308783	54337560	100933000	63	71849										
EDA2R	0	genome.wustl.edu	37	chrX	65824951	65824951	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.296875	19	2.05533829697049e-06	3.57222222222222	4.51228070175439	2.90075187969925	1	1	14	gcagttgaccttctgaacacGattgatgacagcacaggtga	11	9	1	5			TCGA-E9-A3QA-01A-61D-A228-09	TCGA-E9-A3QA-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7dd341c2-d65f-4770-bfdc-eedf3098d9cf	4202b2f2-caf7-46fb-a888-c086c934d7a8	X	65824951	65824951	G	C	SNP	EDA2R	ENST00000253392	human	ensembl	69_37n	-1	known	missense	c.205	p.R69G	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	EDA2R	HGNC	ENSG00000131080	48	0	0	17	4	18.18	-	-	-	C	65824951	G	C	65824951	3	2	880	1	0	0	0	0	1	0	0	0	4939	1058	37	3	704	3	EDA2R	23	65824951	Missense_Mutation	SNP	G	TCGA-E9-A3QA-01A-61D-A228-09	11487391	65824951	89445609	64	71850										
EPB41	0	genome.wustl.edu	37	chr1	29445598	29445598	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ggggcctaaacgtttccctcAgctctgtcaccaactcactt	7	15	4	0			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	1	29445598	29445598	A	G	SNP	EPB41	ENST00000460378	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPB41	HGNC	ENSG00000159023	9	0	0	5	4	44.44	-	-	-	G	29445598	A	G	29445598	1	3	881	0	1	0	0	0	0	0	0	0	5188	203	7	5		5	EPB41	1	29445598	RNA	SNP	A	TCGA-E9-A3X8-01A-31D-A22X-09		29445598	219805023	1	71851										
NSL1	0	genome.wustl.edu	37	chr1	212965024	212965024	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ttctcggggagtggcggagaCcaaggcctggctctctgtgc	16	11	2	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	1	212965024	212965024	C	G	SNP	NSL1	ENST00000366977	human	ensembl	69_37n	-1	known	missense	c.82	p.V28L	0.005	NULL	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697	81	0	0	91	18	16.51	-	-	-	G	212965024	C	G	212965024	3	3	881	1	0	0	0	0	1	0	0	0	10746	507	18	4	876	4	NSL1	1	212965024	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09	183519426	212965024	36285597	2	71852										
EPAS1	0	genome.wustl.edu	37	chr2	46524981	46524981	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	gccgcggggagcggacgaggGccacagccccccacccgcca	15	19	0	0			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	2	46524981	46524981	G	A	SNP	EPAS1	ENST00000467888	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.243	-	-	-	no_errors	EPAS1	HGNC	ENSG00000116016	45	0	0	32	5	13.51	-	-	-	A	46524981	G	A	46524981	1	1	881	0	1	0	0	0	0	0	0	0	5187	1218	42	4		4	EPAS1	2	46524981	RNA	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09		46524981	196674392	3	71853										
STAMBP	0	genome.wustl.edu	37	chr2	74072326	74072326	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	attgcatttcccaaagcagaAgagctgaaggcagagctgtt	11	8	0	4			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	2	74072326	74072326	A	C	SNP	STAMBP	ENST00000339566	human	ensembl	69_37n	1	known	missense	c.312	p.E104D	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBP	HGNC	ENSG00000124356	63	0	0	47	7	12.96	-	-	-	C	74072326	A	C	74072326	3	2	881	1	0	0	0	0	1	0	0	0	15341	69	3	5	322	5	STAMBP	2	74072326	Missense_Mutation	SNP	A	TCGA-E9-A3X8-01A-31D-A22X-09	27547345	74072326	169127047	4	71854										
UBA5	0	genome.wustl.edu	37	chr3	132389818	132389818	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	tctttgactagtaatggtggGttagaagaaggaaaacctgt	12	4	1	3			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	3	132389818	132389818	G	C	SNP	UBA5	ENST00000356232	human	ensembl	69_37n	1	known	silent	c.504	p.G168	0.298	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA5	HGNC	ENSG00000081307	68	0	0	55	10	15.38	-	-	-	C	132389818	G	C	132389818	2	2	881	1	0	0	0	0	0	0	0	1	16927	1248	44	4		4	UBA5	3	132389818	Silent	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09		132389818	65632612	5	71855										
GABBR1	0	genome.wustl.edu	37	chr6	29598304	29598304	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ccgggagctgcccaccagatGgaagtcggggtcacaccgga	15	13	1	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	6	29598304	29598304	G	A	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	missense	c.406	p.H136Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	45	0	0	24	9	27.27	-	-	-	A	29598304	G	A	29598304	3	1	881	1	0	0	0	0	1	0	0	0	6204	1348	47	4	2704	4	GABBR1	6	29598304	Missense_Mutation	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09		29598304	141516763	6	71856										
LMBRD1	0	genome.wustl.edu	37	chr6	70500244	70500244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	caaaaatatatccactggtaGaagtgctgatgtgataagtg	10	5	0	3			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	6	70500244	70500244	G	A	SNP	LMBRD1	ENST00000370577	human	ensembl	69_37n	-1	known	silent	c.190	p.L64	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216	56	0	0	56	11	16.42	-	-	-	A	70500244	G	A	70500244	2	1	881	1	0	0	0	0	0	0	0	1	8898	933	33	2		2	LMBRD1	6	70500244	Silent	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09	40901940	70500244	100614823	7	71857										
KIF20B	0	genome.wustl.edu	37	chr10	91474824	91474824	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ttttctgtgtgggtttctttCtttgaaatttacaatgaata	7	4	3	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	10	91474824	91474824	C	G	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	missense	c.825	p.F275L	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	43	0	0	42	6	12.5	-	-	-	G	91474824	C	G	91474824	3	3	881	1	0	0	0	0	1	0	0	0	8339	912	32	2	851	2	KIF20B	10	91474824	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09		91474824	44059923	8	71858										
MYOF	0	genome.wustl.edu	37	chr10	95088666	95088666	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ctcgccaggtattgactccaGaactgtgaatagcatcacgt	9	11	1	3			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	10	95088666	95088666	G	C	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.4985	p.S1662C	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	87	0	0	89	20	18.35	-	-	-	C	95088666	G	C	95088666	3	2	881	1	0	0	0	0	1	0	0	0	10161	942	33	2	1240	2	MYOF	10	95088666	Missense_Mutation	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09	3613842	95088666	40446081	9	71859										
USP12	0	genome.wustl.edu	37	chr13	27664065	27664065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	gacactcttcacagtaatacTtgtattcactgcacagagtt	6	10	3	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	13	27664065	27664065	T	C	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.689	p.K230R	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	17	0	0	21	8	27.59	-	-	-	C	27664065	T	C	27664065	3	2	881	1	0	0	0	0	1	0	0	0	17140	1609	56	5	439	5	USP12	13	27664065	Missense_Mutation	SNP	T	TCGA-E9-A3X8-01A-31D-A22X-09		27664065	87505813	10	71860										
TDRD9	0	genome.wustl.edu	37	chr14	104470647	104470647	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	tttctgggacaactccatccCtgatcatgttgttcctgaga	8	11	2	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	14	104470647	104470647	C	G	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	1	known	missense	c.1556	p.P519R	0.966	pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	98	0	0	91	14	13.33	-	-	-	G	104470647	C	G	104470647	3	3	881	1	0	0	0	0	1	0	0	0	15831	681	24	4	1610	4	TDRD9	14	104470647	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09		104470647	2878893	11	71861										
CDH1	0	genome.wustl.edu	37	chr16	68849641	68849642	+	In_Frame_Ins	INS	-	-	ATA													0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	actgcccaggagccagacacINSatttatggaacagaaaataa							TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	16	68849641	68849642	-	ATA	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	in_frame_ins	c.1544_1545	p.FME516in_frame_ins*	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	72	0	0	51	13	20.31	-	-	-	ATA	68849642	-	ATA	68849641	7	5	881	1	0	1	1	0	0	0	0	0	3124	478	17	0	1582	0	CDH1	16	68849641	In_Frame_Ins	INS	-	TCGA-E9-A3X8-01A-31D-A22X-09		68849641	21505112	12	71862										
ZNF532	0	genome.wustl.edu	37	chr18	56587855	56587855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	tttccagcaggctgcagataCgagtggacaagtagagtatc	12	8	0	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	18	56587855	56587855	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	1	known	missense	c.2336	p.T779M	0.998	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	43	0	0	36	5	12.2	-	-	-	T	56587855	C	T	56587855	3	4	881	1	0	0	0	0	1	0	0	0	18068	536	19	1	2338	1	ZNF532	18	56587855	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09		56587855	21489393	13	71863										
RDH8	0	genome.wustl.edu	37	chr19	10124259	10124259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	agtgcaactggcccatgaccCcaagaagcgctaccagggta	11	13	0	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	10124259	10124259	C	T	SNP	RDH8	ENST00000591589	human	ensembl	69_37n	1	known	missense	c.146	p.P49L	0.493	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH8	HGNC	ENSG00000080511	38	0	0	37	7	15.91	-	-	-	T	10124259	C	T	10124259	3	4	881	1	0	0	0	0	1	0	0	0	13279	623	22	4	88	4	RDH8	19	10124259	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09		10124259	49004724	14	71864										
EXOC3L2	0	genome.wustl.edu	37	chr19	45735069	45735069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	aaaccccgcagggtgccaggGgagagaaggggccccagctc	16	13	0	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	45735069	45735069	G	A	SNP	EXOC3L2	ENST00000252482	human	ensembl	69_37n	-1	known	silent	c.42	p.S14	0.339	pfam_Sec6	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201	53	0	0	71	20	21.98	-	-	-	A	45735069	G	A	45735069	2	1	881	1	0	0	0	0	0	0	0	1	5341	1219	43	4		4	EXOC3L2	19	45735069	Silent	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09	35610810	45735069	13393914	15	71865										
LRRC4B	0	genome.wustl.edu	37	chr19	51021608	51021608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	gccgccacggggtccacggcCgagacgttgagcgtggccga	17	14	0	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	51021608	51021608	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.1362	p.S454	0.967	smart_Ig_sub	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	50	0	0	77	13	14.44	-	-	-	T	51021608	C	T	51021608	2	4	881	1	0	0	0	0	0	0	0	1	9073	639	23	1		1	LRRC4B	19	51021608	Silent	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09	5286539	51021608	8107375	16	71866										
RUNX1	0	genome.wustl.edu	37	chr21	36164851	36164852	+	Frame_Shift_Ins	INS	-	-	G													0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	tgcatgcgggggtcggagatINSggagggcagcgcggggaact							TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	21	36164851	36164852	-	G	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1024_1023	p.I341fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	16	0	0	28	7	20	-	-	-	G	36164852	-	G	36164851	7	5	881	1	0	1	1	0	0	0	0	0	13832	1464	51	0	422	0	RUNX1	21	36164851	Frame_Shift_Ins	INS	-	TCGA-E9-A3X8-01A-31D-A22X-09		36164851	11965044	17	71867										
COMT	0	genome.wustl.edu	37	chr22	19956088	19956088	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	ctgctgcggaaggggacagtGctactggctgacaacgtgat	15	9	0	2			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	22	19956088	19956088	G	T	SNP	COMT	ENST00000361682	human	ensembl	69_37n	1	known	silent	c.645	p.V215	1.000	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010	40	0	0	35	4	10.26	-	-	-	T	19956088	G	T	19956088	2	4	881	1	0	0	0	0	0	0	0	1	3755	1306	46	4		4	COMT	22	19956088	Silent	SNP	G	TCGA-E9-A3X8-01A-31D-A22X-09		19956088	31348478	18	71868										
NXF2	0	genome.wustl.edu	37	chrX	101576790	101576790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	cttggctattcccttcgaccCcaaggactcagccccgtgag	9	16	1	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	X	101576790	101576790	C	T	SNP	NXF2	ENST00000330252	human	ensembl	69_37n	1	known	missense	c.1286	p.P429L	0.005	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2	HGNC	ENSG00000185554	82	0	0	91	20	18.02	-	-	-	T	101576790	C	T	101576790	3	4	881	1	0	0	0	0	1	0	0	0	10856	623	22	4	1340	4	NXF2	23	101576790	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09		101576790	53693770	19	71869										
CDR1	0	genome.wustl.edu	37	chrX	139865867	139865867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.15	3	0.593406279394177	1.64010989010989	3.06153846153846	0.85042735042735	1	1	0	tccagaaaaatctacgtcttCcaccaaatccaggtcttcca	4	14	3	1			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	X	139865867	139865867	C	T	SNP	CDR1	ENST00000370532	human	ensembl	69_37n	-1	known	missense	c.665	p.G222E	0.999	NULL	NULL	-	no_errors	CDR1	HGNC	ENSG00000184258	94	0	0	107	17	13.71	-	-	-	T	139865867	C	T	139865867	3	4	881	1	0	0	0	0	1	0	0	0	3200	855	30	2	127	2	CDR1	23	139865867	Missense_Mutation	SNP	C	TCGA-E9-A3X8-01A-31D-A22X-09	38289077	139865867	15404693	20	71870										
LUZP1	0	genome.wustl.edu	37	chr1	23418097	23418097	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gcatggctattcctctccacAggatccgatggcttgattat	9	11	1	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	1	23418097	23418097	A	G	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	silent	c.2658	p.P886	0.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	56	0	0	57	19	25	-	-	-	G	23418097	A	G	23418097	2	3	882	1	0	0	0	0	0	0	0	1	9152	175	7	5		5	LUZP1	1	23418097	Silent	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09		23418097	225832524	1	71871										
LRRC42	0	genome.wustl.edu	37	chr1	54417833	54417833	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	ccccaaaggcttttctgtggAgctttgcatgaacagggaag	12	9	1	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	1	54417833	54417833	A	C	SNP	LRRC42	ENST00000319223	human	ensembl	69_37n	1	known	missense	c.161	p.E54A	1.000	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212	44	0	0	47	28	37.33	-	-	-	C	54417833	A	C	54417833	3	2	882	1	0	0	0	0	1	0	0	0	9066	304	11	5	163	5	LRRC42	1	54417833	Missense_Mutation	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09	30999736	54417833	194832788	2	71872										
SPRED2	0	genome.wustl.edu	37	chr2	65561392	65561392	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	tgggcccgccagaatccattCtctacttctgagccaagaca	8	14	2	3			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	65561392	65561392	C	T	SNP	SPRED2	ENST00000426832	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	0.254	NULL	pfam_EVH1,pfscan_EVH1	-	no_start_codon	SPRED2	HGNC	ENSG00000198369	26	0	0	29	4	12.12	-	-	-	T	65561392	C	T	65561392	2	4	882	1	0	0	0	0	0	0	0	1	15184	928	32	2		2	SPRED2	2	65561392	Silent	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09		65561392	177637981	3	71873										
SCN2A	0	genome.wustl.edu	37	chr2	166179831	166179831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gccgaagagactctctgttcGtgccgcacagacatggagaa	12	11	1	3			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	166179831	166179831	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	1	known	missense	c.1837	p.V613M	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	33	0	0	30	16	34.78	-	-	-	A	166179831	G	A	166179831	3	1	882	1	0	0	0	0	1	0	0	0	14004	1145	40	1	1975	1	SCN2A	2	166179831	Missense_Mutation	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09	100618439	166179831	77019542	4	71874										
TTN	0	genome.wustl.edu	37	chr2	179439401	179439401	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	aaccttaaatggatagttggCaactatgcatgctgatgtga	10	6	0	2			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	179439401	179439401	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.63754	p.A21252S	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	53	0	0	42	8	16	-	-	-	A	179439401	C	A	179439401	3	1	882	1	0	0	0	0	1	0	0	0	16832	710	25	4	36669	4	TTN	2	179439401	Missense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09	13259570	179439401	63759972	5	71875										
ANKZF1	0	genome.wustl.edu	37	chr2	220100577	220100577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	aagagcagcggcgatttgccGccctcagtgaccgagagaag	14	11	1	3			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	220100577	220100577	G	A	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	1	known	missense	c.1951	p.A651T	0.827	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	14	0	0	17	9	33.33	-	-	-	A	220100577	G	A	220100577	3	1	882	1	0	0	0	0	1	0	0	0	692	1087	38	1	1993	1	ANKZF1	2	220100577	Missense_Mutation	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09	40661176	220100577	23098796	6	71876										
USP4	0	genome.wustl.edu	37	chr3	49377435	49377435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	tctccgcatccggtcgctcaCggcagcctccaccttccgcc	8	21	2	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	3	49377435	49377435	C	T	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.23	p.R8H	0.341	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	41	0	0	37	32	46.38	-	-	-	T	49377435	C	T	49377435	3	4	882	1	0	0	0	0	1	0	0	0	17168	536	19	1	2956	1	USP4	3	49377435	Missense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09		49377435	148644995	7	71877										
TMEM196	0	genome.wustl.edu	37	chr7	19765246	19765246	+	Frame_Shift_Del	DEL	C	C	-													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gccaggaagagagagtgcagCccccgatcccaatgcacgcg							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	7	19765246	19765246	C	-	DEL	TMEM196	ENST00000405764	human	ensembl	69_37n	-1	known	frame_shift_del	c.350	p.G117fs	1.000	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452	59	0	0	80	33	29.2	-	-	-	-	19765246	C	-	19765246	7	5	882	1	0	1	0	1	0	0	0	0	16213	739	26	0	176	0	TMEM196	7	19765246	Frame_Shift_Del	DEL	C	TCGA-E9-A54X-01A-11D-A25Q-09		19765246	139373417	8	71878										
ABL1	0	genome.wustl.edu	37	chr9	133753945	133753945	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	cagagaaggtctatgaactcAtgcgagcatgtaagccttcc	10	10	2	2			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	9	133753945	133753945	A	T	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	1	known	missense	c.1471	p.M491L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	36	0	0	44	12	21.43	-	-	-	T	133753945	A	T	133753945	3	4	882	1	0	0	0	0	1	0	0	0	92	217	8	5	1584	5	ABL1	9	133753945	Missense_Mutation	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09		133753945	7459486	9	71879										
KLF6	0	genome.wustl.edu	37	chr10	3821561	3821561	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	tgcaccacgggtgctatgccGcttcttacaggaccttttta	9	12	1	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	3821561	3821561	G	A	SNP	KLF6	ENST00000173785	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KLF6	HGNC	ENSG00000067082	8	0	0	5	8	61.54	-	-	-	A	3821561	G	A	3821561	1	1	882	0	1	0	0	0	0	0	0	0	8403	1102	38	1		1	KLF6	10	3821561	RNA	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09		3821561	131713186	10	71880										
HNRNPF	0	genome.wustl.edu	37	chr10	43882627	43882627	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gcccccgtagcctgtgctgtAggcaccaggcctcatccttt	10	16	1	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	43882627	43882627	A	G	SNP	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	missense	c.706	p.Y236H	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	56	0	0	60	27	31.03	-	-	-	G	43882627	A	G	43882627	3	3	882	1	0	0	0	0	1	0	0	0	7316	420	15	5	545	5	HNRNPF	10	43882627	Missense_Mutation	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09	40061066	43882627	91652120	11	71881										
FAM22D	0	genome.wustl.edu	37	chr10	89125892	89125892	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	taagtgccccctttcctcccGcagctagtggagaagcgcct	10	15	0	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	89125892	89125892	G	A	SNP	FAM22D	ENST00000465545	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM22D	HGNC	ENSG00000214562	17	0	0	23	9	28.12	-	-	-	A	89125892	G	A	89125892	1	1	882	0	1	0	0	0	0	0	0	0	5586	1102	38	1		1	FAM22D	10	89125892	RNA	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09	45243265	89125892	46408855	12	71882										
RCN1	0	genome.wustl.edu	37	chr11	32124950	32124950	+	Frame_Shift_Del	DEL	A	A	-													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	agacaaagatgagattcgccActggatcctccctcaagatt							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	11	32124950	32124950	A	-	DEL	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	frame_shift_del	c.812	p.H271fs	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	77	0	0	78	21	21.21	-	-	-	-	32124950	A	-	32124950	7	5	882	1	0	1	0	1	0	0	0	0	13262	159	6	0	830	0	RCN1	11	32124950	Frame_Shift_Del	DEL	A	TCGA-E9-A54X-01A-11D-A25Q-09		32124950	102881566	13	71883	510	2								
RCN1	0	genome.wustl.edu	37	chr11	32124952	32124953	+	Frame_Shift_Del	DEL	TG	TG	-													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	acaaagatgagattcgccacTggatcctccctcaagattat							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	11	32124952	32124953	TG	-	DEL	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	frame_shift_del	c.814_815	p.W272fs	1.000:1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	82	0	0	78	21	21.21	-	-	-	-	32124953	TG	-	32124952	7	5	882	1	0	1	0	1	0	0	0	0	13262	1580	55	0	832	0	RCN1	11	32124952	Frame_Shift_Del	DEL	TG	TCGA-E9-A54X-01A-11D-A25Q-09	2	32124952	102881564	14	71884	510	2								
DHRS4	0	genome.wustl.edu	37	chr14	24424346	24424346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	caggcggtggccacgctgcaGggggaggggctgagcgtgac	21	10	0	2			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	24424346	24424346	G	A	SNP	DHRS4	ENST00000313250	human	ensembl	69_37n	1	known	silent	c.231	p.Q77	0.984	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS4	HGNC	ENSG00000157326	45	0	0	71	8	10	-	-	-	A	24424346	G	A	24424346	2	1	882	1	0	0	0	0	0	0	0	1	4528	991	35	4		4	DHRS4	14	24424346	Silent	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09		24424346	82925194	15	71885										
NYNRIN	0	genome.wustl.edu	37	chr14	24878032	24878032	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gtatcagccctgggtgtgtgCccaccctggaaggcctggac	14	13	1	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	24878032	24878032	C	A	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	nonsense	c.1032	p.C344*	0.390	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	31	0	0	41	15	26.79	-	-	-	A	24878032	C	A	24878032	4	1	882	1	0	0	0	0	0	1	0	0	10869	747	26	4	1042	4	NYNRIN	14	24878032	Nonsense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09	453686	24878032	82471508	16	71886										
MBIP	0	genome.wustl.edu	37	chr14	36783731	36783731	+	Missense_Mutation	SNP	A	A	C													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	tagttaccttgattacaatcAataacattgcaaaattccct							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	36783731	36783731	A	C	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.558	p.I186M	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	30	0	0	31	15	32.61	-	-	-	C	36783731	A	C	36783731	3	2	882	1	0	0	0	0	1	0	0	0	9420	126	5	5	500	5	MBIP	14	36783731	Missense_Mutation	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09	11905699	36783731	70565809	17	71887	511	2								
MBIP	0	genome.wustl.edu	37	chr14	36783732	36783732	+	Missense_Mutation	SNP	A	A	G													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	agttaccttgattacaatcaAtaacattgcaaaattccctg							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	36783732	36783732	A	G	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.557	p.I186T	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	30	0	0	31	15	32.61	-	-	-	G	36783732	A	G	36783732	3	3	882	1	0	0	0	0	1	0	0	0	9420	101	4	5	501	5	MBIP	14	36783732	Missense_Mutation	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09	1	36783732	70565808	18	71888	511	2								
ACAN	0	genome.wustl.edu	37	chr15	89401123	89401123	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	ccaggtattagtggagaagcAtctggagttctttatggcac	12	7	2	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	15	89401123	89401123	A	T	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	1	known	silent	c.5307	p.A1769	0.117	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	65	0	0	99	29	22.66	-	-	-	T	89401123	A	T	89401123	2	4	882	1	0	0	0	0	0	0	0	1	117	204	8	5		5	ACAN	15	89401123	Silent	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09		89401123	13130269	19	71889										
GAN	0	genome.wustl.edu	37	chr16	81391441	81391441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gaaacccacagcagcgatgcGatgcatgtgccctctctatg	10	13	1	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	16	81391441	81391441	G	A	SNP	GAN	ENST00000248272	human	ensembl	69_37n	1	known	missense	c.878	p.R293Q	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000127688	71	0	0	39	30	43.48	-	-	-	A	81391441	G	A	81391441	3	1	882	1	0	0	0	0	1	0	0	0	6282	1058	37	1	896	1	GAN	16	81391441	Missense_Mutation	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09		81391441	8963312	20	71890										
KRT13	0	genome.wustl.edu	37	chr17	39659272	39659272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	cctcatctctgccagcacgcGggtcaggtcaatgcctgggg	13	14	4	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	17	39659272	39659272	G	A	SNP	KRT13	ENST00000246635	human	ensembl	69_37n	-1	known	missense	c.814	p.R272C	1.000	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	26	0	0	35	12	25.53	-	-	-	A	39659272	G	A	39659272	3	1	882	1	0	0	0	0	1	0	0	0	8503	1116	39	1	582	1	KRT13	17	39659272	Missense_Mutation	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09		39659272	41535938	21	71891										
BRCA1	0	genome.wustl.edu	37	chr17	41244296	41244296	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	ggttgcaaaacccctaatctAagcatagcattcaattttgg	7	9	2	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	17	41244296	41244296	A	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	silent	c.3252	p.L1084	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	33	0	0	33	7	17.5	-	-	-	T	41244296	A	T	41244296	2	4	882	1	0	0	0	0	0	0	0	1	1506	349	13	5		5	BRCA1	17	41244296	Silent	SNP	A	TCGA-E9-A54X-01A-11D-A25Q-09	1585024	41244296	39950914	22	71892										
NWD1	0	genome.wustl.edu	37	chr19	16908579	16908579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gcggatattcttggcggactCgaggggctttcgccgattca	14	10	2	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	19	16908579	16908579	C	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.3341	p.S1114L	0.354	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	43	0	0	38	21	35.59	-	-	-	T	16908579	C	T	16908579	3	4	882	1	0	0	0	0	1	0	0	0	10854	893	31	1	2982	1	NWD1	19	16908579	Missense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09		16908579	42220404	23	71893										
CEACAM18	0	genome.wustl.edu	37	chr19	51984799	51984799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	gtgaccggatgacaatttccCcagacggcaagaccctcgtc	10	14	0	4			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	19	51984799	51984799	C	A	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	1	known	missense	c.736	p.P246T	0.002	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	72	0	0	57	23	28.75	-	-	-	A	51984799	C	A	51984799	3	1	882	1	0	0	0	0	1	0	0	0	3218	623	22	4	750	4	CEACAM18	19	51984799	Missense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09	35076220	51984799	7144184	24	71894										
TGM2	0	genome.wustl.edu	37	chr20	36766789	36766789	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	tccctctcctctgaggacccTgtaggggttgagaagagagc	13	11	2	3			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	20	36766789	36766789	T	C	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	splice_site	c.1343-2	e10-2	1.000	-	-	-	no_errors	TGM2	HGNC	ENSG00000198959	38	0	0	45	22	32.84	-	-	-	C	36766789	T	C	36766789	5	2	882	1	0	0	0	0	0	0	1	0	15925	1594	55	5	770	5	TGM2	20	36766789	Splice_Site	SNP	T	TCGA-E9-A54X-01A-11D-A25Q-09		36766789	26258731	25	71895										
ZNF334	0	genome.wustl.edu	37	chr20	45130701	45130703	+	In_Frame_Del	DEL	CTT	CTT	-													0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	agggcttctctcctgtatgaCttcttcgatgcacattgagg							TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	20	45130701	45130703	CTT	-	DEL	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	in_frame_del	c.1277_1275	p.R425in_frame_del	0.886:0.994:0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	42	0	0	32	17	34	-	-	-	-	45130703	CTT	-	45130701	7	5	882	1	0	1	0	1	0	0	0	0	17947	565	20	0	769	0	ZNF334	20	45130701	In_Frame_Del	DEL	CTT	TCGA-E9-A54X-01A-11D-A25Q-09	8363912	45130701	17894819	26	71896										
COL6A1	0	genome.wustl.edu	37	chr21	47423450	47423450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	aggacggaccccgcccacgaCgtgcgggtggcggtggtgca	18	13	0	0			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	21	47423450	47423450	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	1	known	silent	c.2610	p.D870	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	28	0	0	31	15	32.61	-	-	-	T	47423450	C	T	47423450	2	4	882	1	0	0	0	0	0	0	0	1	3729	535	19	1		1	COL6A1	21	47423450	Silent	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09		47423450	706445	27	71897										
MAGEE2	0	genome.wustl.edu	37	chrX	75004573	75004573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	actgctggatagacccctccGtctggcttttcattctcatg	8	13	3	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	75004573	75004573	G	A	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.314	p.T105M	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	17	0	0	19	9	32.14	-	-	-	A	75004573	G	A	75004573	3	1	882	1	0	0	0	0	1	0	0	0	9257	1145	40	1	1261	1	MAGEE2	23	75004573	Missense_Mutation	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09		75004573	80265987	28	71898										
BTK	0	genome.wustl.edu	37	chrX	100615095	100615095	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	ctcatacatttctatggagtCttctgcttcagtgacatagt	7	9	5	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	100615095	100615095	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.820	p.D274N	1.000	pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	73	0	0	51	36	41.38	-	-	-	T	100615095	C	T	100615095	3	4	882	1	0	0	0	0	1	0	0	0	1566	913	32	2	1203	2	BTK	23	100615095	Missense_Mutation	SNP	C	TCGA-E9-A54X-01A-11D-A25Q-09	25610522	100615095	54655465	29	71899										
IDS	0	genome.wustl.edu	37	chrX	148584951	148584951	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.838444629955225	1.23883928571429	NA	1.23883928571429	0.333333333333333	0.930327025915261	0	ctccagtaggagttgaagtcGtacaggcgggtggtgtcagg	17	7	1	1			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	148584951	148584951	G	A	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.309	p.Y103	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	36	0	0	42	21	33.33	-	-	-	A	148584951	G	A	148584951	2	1	882	1	0	0	0	0	0	0	0	1	7557	1140	40	1		1	IDS	23	148584951	Silent	SNP	G	TCGA-E9-A54X-01A-11D-A25Q-09	47969856	148584951	6685609	30	71900										
MTOR	0	genome.wustl.edu	37	chr1	11174931	11174931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tcttctctggaaacttctctCgggtcatagcaacctacaga	7	12	4	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	11174931	11174931	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.7103	p.R2368Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	45	0	0	25	7	21.88	-	-	-	T	11174931	C	T	11174931	3	4	883	1	0	0	0	0	1	0	0	0	10026	884	31	1	574	1	MTOR	1	11174931	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		11174931	238075690	1	71901										
ZMYM4	0	genome.wustl.edu	37	chr1	35852683	35852683	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agtaattgtaagcatccccaCaggttccacagtgtcagccg	9	12	1	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	35852683	35852683	C	A	SNP	ZMYM4	ENST00000314607	human	ensembl	69_37n	1	known	missense	c.1916	p.T639K	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH	-	no_errors	ZMYM4	HGNC	ENSG00000146463	63	0	0	25	7	21.88	-	-	-	A	35852683	C	A	35852683	3	1	883	1	0	0	0	0	1	0	0	0	17798	478	17	4	1962	4	ZMYM4	1	35852683	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	24677752	35852683	213397938	2	71902										
USP24	0	genome.wustl.edu	37	chr1	55591335	55591335	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	taatgcaatatatttacataCcttgcaagctgtagacagat	6	7	0	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	55591335	55591335	C	A	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	splice_site	c.3731+1	e33+1	1.000	-	-	-	no_errors	USP24	HGNC	ENSG00000162402	41	0	0	27	3	10	-	-	-	A	55591335	C	A	55591335	5	1	883	1	0	0	0	0	0	0	1	0	17152	521	18	4	4274	4	USP24	1	55591335	Splice_Site	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	19738652	55591335	193659286	3	71903										
THEM5	0	genome.wustl.edu	37	chr1	151819760	151819760	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gaggcaggaggcaggcagggGaggcaggaggcaggaggcag	24	6	0	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	151819760	151819760	G	C	SNP	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	missense	c.619	p.P207A	0.057	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	29	0	0	42	7	14.29	-	-	-	C	151819760	G	C	151819760	3	2	883	1	0	0	0	0	1	0	0	0	15954	1189	41	2		2	THEM5	1	151819760	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	96228425	151819760	97430861	4	71904										
FCRL5	0	genome.wustl.edu	37	chr1	157514865	157514865	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gaaagtggagcttgcaggatCagcgaagctatgagaaacac	13	7	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	157514865	157514865	C	A	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	silent	c.315	p.L105	0.959	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	45	0	0	55	13	19.12	-	-	-	A	157514865	C	A	157514865	2	1	883	1	0	0	0	0	0	0	0	1	5844	813	29	2		2	FCRL5	1	157514865	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	5695105	157514865	91735756	5	71905										
OR10K2	0	genome.wustl.edu	37	chr1	158390002	158390002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tatggcagagaggatgtgaaCataggacaccaagatcaaca	11	7	1	3			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	158390002	158390002	C	A	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	missense	c.655	p.V219F	0.165	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	61	0	0	60	12	16.67	-	-	-	A	158390002	C	A	158390002	3	1	883	1	0	0	0	0	1	0	0	0	10987	478	17	4	285	4	OR10K2	1	158390002	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	875137	158390002	90860619	6	71906										
HMCN1	0	genome.wustl.edu	37	chr1	186086699	186086699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	atttccctcaattcactggaCcaaaaatggtataagactgc	6	10	2	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	1	186086699	186086699	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.11792	p.T3931N	0.792	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	26	0	0	44	15	25.42	-	-	-	A	186086699	C	A	186086699	3	1	883	1	0	0	0	0	1	0	0	0	7271	507	18	4	12098	4	HMCN1	1	186086699	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	27696697	186086699	63163922	7	71907										
NLRC4	0	genome.wustl.edu	37	chr2	32475166	32475166	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	aataagtaatcggggatgttCcctgagttgatatataagct	10	5	0	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	2	32475166	32475166	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	69_37n	-1	known	silent	c.1767	p.G589	0.983	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106	48	0	0	31	8	20.51	-	-	-	T	32475166	C	T	32475166	2	4	883	1	0	0	0	0	0	0	0	1	10541	842	30	2		2	NLRC4	2	32475166	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		32475166	210724207	8	71908										
C2orf62	0	genome.wustl.edu	37	chr2	219232516	219232516	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cacgcgctcatctccgacttCctgctcttcctgctgctgcg	8	18	3	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	2	219232516	219232516	C	T	SNP	C2orf62	ENST00000289388	human	ensembl	69_37n	1	known	silent	c.993	p.F331	0.999	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428	68	0	0	28	4	12.5	-	-	-	T	219232516	C	T	219232516	2	4	883	1	0	0	0	0	0	0	0	1	2201	854	30	2		2	C2orf62	2	219232516	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	186757350	219232516	23966857	9	71909										
ARF4	0	genome.wustl.edu	37	chr3	57557144	57557144	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	aaatgggttatgaagaaaatGtattcatcgaatttgatgag	10	2	1	4			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	3	57557144	57557144	G	A	SNP	ARF4	ENST00000489843	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	ARF4	HGNC	ENSG00000168374	17	0	0	16	5	23.81	-	-	-	A	57557144	G	A	57557144	1	1	883	0	1	0	0	0	0	0	0	0	848	1392	48	4		4	ARF4	3	57557144	RNA	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		57557144	140465286	10	71910										
COL8A1	0	genome.wustl.edu	37	chr3	99513184	99513184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	atgggatacctggaattaaaGgaaaaccagggccacaggga	13	7	0	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	3	99513184	99513184	G	A	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	1	known	missense	c.439	p.G147R	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	33	0	0	30	9	23.08	-	-	-	A	99513184	G	A	99513184	3	1	883	1	0	0	0	0	1	0	0	0	3735	1001	35	4	445	4	COL8A1	3	99513184	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	41956040	99513184	98509246	11	71911										
UGT3A2	0	genome.wustl.edu	37	chr5	36049459	36049460	+	Frame_Shift_Ins	INS	-	-	A													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	ccatgatatcctttctatttINSaaaaaatgactgcactgcaa							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	5	36049459	36049460	-	A	INS	UGT3A2	ENST00000282507	human	ensembl	69_37n	-1	known	frame_shift_ins	c.375_374	p.L125fs	0.005:0.013	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671	47	0	0	21	12	36.36	-	-	-	A	36049460	-	A	36049459	7	5	883	1	0	1	1	0	0	0	0	0	17061	1751	61	0	1212	0	UGT3A2	5	36049459	Frame_Shift_Ins	INS	-	TCGA-E9-A54Y-01A-11D-A25Q-09		36049459	144865801	12	71912										
POU4F3	0	genome.wustl.edu	37	chr5	145719176	145719176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cgcgccgaagctctggcggcGgtggatatcgtctcccacgg	15	14	2	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	5	145719176	145719176	G	A	SNP	POU4F3	ENST00000230732	human	ensembl	69_37n	1	known	silent	c.186	p.A62	0.998	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,prints_POU,pfscan_Homeodomain,pfscan_POU_specific	-	no_errors	POU4F3	HGNC	ENSG00000091010	71	0	0	40	5	11.11	-	-	-	A	145719176	G	A	145719176	2	1	883	1	0	0	0	0	0	0	0	1	12353	1103	39	1		1	POU4F3	5	145719176	Silent	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	109669717	145719176	35196084	13	71913										
FAT2	0	genome.wustl.edu	37	chr5	150920247	150920247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gtacttggctgtatgctcgcGgtccagggtcttccttgagg	14	10	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	5	150920247	150920247	G	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.8920	p.R2974C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	90	0	0	38	15	28.3	-	-	-	A	150920247	G	A	150920247	3	1	883	1	0	0	0	0	1	0	0	0	5736	1116	39	1	4185	1	FAT2	5	150920247	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	5201071	150920247	29995013	14	71914										
NSD1	0	genome.wustl.edu	37	chr5	176638368	176638368	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gtgactctgcattatctggcGagttgtctgcttccctacct	9	12	3	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	5	176638368	176638368	G	T	SNP	NSD1	ENST00000439151	human	ensembl	69_37n	1	known	nonsense	c.2968	p.E990*	0.104	NULL	pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	15	0	0	6	7	53.85	-	-	-	T	176638368	G	T	176638368	4	4	883	1	0	0	0	0	0	1	0	0	10742	1059	37	3	2982	3	NSD1	5	176638368	Nonsense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	25718121	176638368	4276892	15	71915										
HIVEP1	0	genome.wustl.edu	37	chr6	12123074	12123074	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agattctacactacagagtcGctgggtcctccggcatctgg	11	12	2	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	6	12123074	12123074	G	T	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	1	known	missense	c.3046	p.A1016S	0.224	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	28	0	0	21	17	44.74	-	-	-	T	12123074	G	T	12123074	3	4	883	1	0	0	0	0	1	0	0	0	7237	1087	38	3	3056	3	HIVEP1	6	12123074	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		12123074	158991993	16	71916										
LRFN2	0	genome.wustl.edu	37	chr6	40400151	40400151	+	Frame_Shift_Del	DEL	G	G	-													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cccccaaaactaaaggacaaGggtggggcaaagggtgtggc							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	6	40400151	40400151	G	-	DEL	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	frame_shift_del	c.702	p.L235fs	0.042	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	45	0	0	29	18	37.5	-	-	-	-	40400151	G	-	40400151	7	5	883	1	0	1	0	1	0	0	0	0	9004	987	35	0	1675	0	LRFN2	6	40400151	Frame_Shift_Del	DEL	G	TCGA-E9-A54Y-01A-11D-A25Q-09	28277077	40400151	130714916	17	71917										
CNPY3	0	genome.wustl.edu	37	chr6	42897357	42897358	+	In_Frame_Ins	INS	-	-	TGC													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	ctgtcttctgcttcttccctINStgctgctgctgctgctgctg							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	6	42897357	42897358	-	TGC	INS	CNPY3	ENST00000372836	human	ensembl	69_37n	1	known	in_frame_ins	c.49_50	p.21in_frame_insL	0.004:0.122	NULL	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	48	0	0	41	11	21.15	-	-	-	TGC	42897358	-	TGC	42897357	7	5	883	1	0	1	1	0	0	0	0	0	3659	1606	56	0	51	0	CNPY3	6	42897357	In_Frame_Ins	INS	-	TCGA-E9-A54Y-01A-11D-A25Q-09	2497206	42897357	128217710	18	71918										
LPA	0	genome.wustl.edu	37	chr6	161012001	161012001	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tcagaaacagccgtggacgtCgcaaggacacttgattctgt	11	10	2	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	6	161012001	161012001	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	silent	c.3762	p.A1254	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	74	0	0	13	34	70.83	-	-	-	T	161012001	C	T	161012001	2	4	883	1	0	0	0	0	0	0	0	1	8969	871	31	1		1	LPA	6	161012001	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	118114644	161012001	10103066	19	71919										
CUX1	0	genome.wustl.edu	37	chr7	101833121	101833121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agaaaaactcaaaggccaggCtgactatgaagaggtgaaga	12	6	1	6			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	7	101833121	101833121	C	T	SNP	CUX1	ENST00000360264	human	ensembl	69_37n	1	known	missense	c.1079	p.A360V	1.000	superfamily_LemA-like_dom	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	24	0	0	14	11	44	-	-	-	T	101833121	C	T	101833121	3	4	883	1	0	0	0	0	1	0	0	0	4095	797	28	4	1159	4	CUX1	7	101833121	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		101833121	57305542	20	71920										
CALD1	0	genome.wustl.edu	37	chr7	134618585	134618585	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gagaaaagggcagcagaggaGaggcagaggataaaagagga	18	3	0	5			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	7	134618585	134618585	G	T	SNP	CALD1	ENST00000361675	human	ensembl	69_37n	1	novel	missense	c.1065	p.E355D	0.003	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	45	0	0	14	10	41.67	-	-	-	T	134618585	G	T	134618585	3	4	883	1	0	0	0	0	1	0	0	0	2606	933	33	2	1132	2	CALD1	7	134618585	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	32785464	134618585	24520078	21	71921										
MYOM2	0	genome.wustl.edu	37	chr8	2024279	2024279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	atggacttgcagtgccacgaCgccaaccgggactacgtcat	11	13	1	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	8	2024279	2024279	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	silent	c.1179	p.D393	0.970	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	50	0	0	15	7	31.82	-	-	-	T	2024279	C	T	2024279	2	4	883	1	0	0	0	0	0	0	0	1	10164	535	19	1		1	MYOM2	8	2024279	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		2024279	144339743	22	71922										
PBK	0	genome.wustl.edu	37	chr8	27685656	27685656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cacatttaccccagtaccaaAgccaagcttctgcataaacg	5	14	1	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	8	27685656	27685656	A	G	SNP	PBK	ENST00000301905	human	ensembl	69_37n	-1	known	missense	c.118	p.F40L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PBK	HGNC	ENSG00000168078	43	0	0	16	10	38.46	-	-	-	G	27685656	A	G	27685656	3	3	883	1	0	0	0	0	1	0	0	0	11561	72	3	5	874	5	PBK	8	27685656	Missense_Mutation	SNP	A	TCGA-E9-A54Y-01A-11D-A25Q-09	25661377	27685656	118678366	23	71923										
TLN1	0	genome.wustl.edu	37	chr9	35708476	35708476	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tcagagacaccaaccagataTgcagcctgggaagagaaaag	11	9	1	3			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	9	35708476	35708476	T	G	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	silent	c.4332	p.A1444	0.912	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	30	0	0	25	15	37.5	-	-	-	G	35708476	T	G	35708476	2	3	883	1	0	0	0	0	0	0	0	1	16042	1451	51	5		5	TLN1	9	35708476	Silent	SNP	T	TCGA-E9-A54Y-01A-11D-A25Q-09		35708476	105504955	24	71924										
ARPC5L	0	genome.wustl.edu	37	chr9	127631656	127631658	+	In_Frame_Del	DEL	GGC	GGC	-													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tttgtggacgagcaggaggaGgcggcggcggcggcggcgga							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	9	127631656	127631658	GGC	-	DEL	ARPC5L	ENST00000259477	human	ensembl	69_37n	1	known	in_frame_del	c.87_89	p.A33in_frame_del	1.000:1.000:1.000	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5L	HGNC	ENSG00000136950	16	0	0	2	2	50	-	-	-	-	127631658	GGC	-	127631656	7	5	883	1	0	1	0	1	0	0	0	0	979	991	35	0	89	0	ARPC5L	9	127631656	In_Frame_Del	DEL	GGC	TCGA-E9-A54Y-01A-11D-A25Q-09	91923180	127631656	13581775	25	71925										
SPTAN1	0	genome.wustl.edu	37	chr9	131347092	131347092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	aaccacgcatcaaagcagttAcacagaaggggaatgccatg	10	10	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	9	131347092	131347092	A	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	1	known	missense	c.2530	p.T844A	0.997	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	99	0	0	64	22	25.58	-	-	-	G	131347092	A	G	131347092	3	3	883	1	0	0	0	0	1	0	0	0	15208	391	14	5	2596	5	SPTAN1	9	131347092	Missense_Mutation	SNP	A	TCGA-E9-A54Y-01A-11D-A25Q-09	3715436	131347092	9866339	26	71926										
MRGPRX4	0	genome.wustl.edu	37	chr11	18195222	18195222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	ccgccccacacacctgtcagCggtcgtgtgtgtcctgctct	10	17	2	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	11	18195222	18195222	C	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	69_37n	1	known	missense	c.419	p.A140V	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	95	0	0	62	14	18.42	-	-	-	T	18195222	C	T	18195222	3	4	883	1	0	0	0	0	1	0	0	0	9841	768	27	1	421	1	MRGPRX4	11	18195222	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		18195222	116811294	27	71927										
SLC1A2	0	genome.wustl.edu	37	chr11	35282449	35282449	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agactcatatccttatttctCacgtttccaaggttcttcct	4	12	3	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	11	35282449	35282449	C	T	SNP	SLC1A2	ENST00000278379	human	ensembl	69_37n	-1	known	missense	c.1717	p.E573K	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A2	HGNC	ENSG00000110436	102	0	0	64	12	15.79	-	-	-	T	35282449	C	T	35282449	3	4	883	1	0	0	0	0	1	0	0	0	14521	835	29	2	11	2	SLC1A2	11	35282449	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	17087227	35282449	99724067	28	71928										
TUT1	0	genome.wustl.edu	37	chr11	62343518	62343518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tctgtaggcgcccagccaccCggctggtcacattggctgcg	13	15	2	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	11	62343518	62343518	C	T	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	missense	c.1787	p.R596Q	1.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	37	0	0	15	18	54.55	-	-	-	T	62343518	C	T	62343518	3	4	883	1	0	0	0	0	1	0	0	0	16877	652	23	1	955	1	TUT1	11	62343518	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	27061069	62343518	72662998	29	71929										
MLL	0	genome.wustl.edu	37	chr11	118359386	118359386	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agttttgtttagaggagaacGagcgccctctggaggaccag	14	8	1	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	11	118359386	118359386	G	T	SNP	MLL	ENST00000389506	human	ensembl	69_37n	1	known	nonsense	c.4390	p.E1464*	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pirsf_MeTrfase_trithorax,pfscan_Znf_PHD-finger	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	111	0	0	14	67	82.72	-	-	-	T	118359386	G	T	118359386	4	4	883	1	0	0	0	0	0	1	0	0	9691	1059	37	3	4432	3	MLL	11	118359386	Nonsense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	56015868	118359386	16647130	30	71930										
TENC1	0	genome.wustl.edu	37	chr12	53448060	53448060	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	ctcctcctccccaggagcttCagcctggacccgctcatgga	9	18	2	0			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	12	53448060	53448060	C	A	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	missense	c.387	p.F129L	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	47	0	0	20	23	53.49	-	-	-	A	53448060	C	A	53448060	3	1	883	1	0	0	0	0	1	0	0	0	15853	825	29	2	492	2	TENC1	12	53448060	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		53448060	80403835	31	71931										
WSCD2	0	genome.wustl.edu	37	chr12	108603944	108603944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tcggcgccgagtgctactgcGgccacaagatccaggcgacg	14	14	0	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	12	108603944	108603944	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.544	p.G182S	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	41	0	0	20	26	56.52	-	-	-	A	108603944	G	A	108603944	3	1	883	1	0	0	0	0	1	0	0	0	17504	1116	39	1	554	1	WSCD2	12	108603944	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	55155884	108603944	25247951	32	71932										
CHFR	0	genome.wustl.edu	37	chr12	133418072	133418072	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gaaaacaccttgacgtgcttGtctctgtattttaaaaacac	6	9	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	12	133418072	133418072	G	A	SNP	CHFR	ENST00000535527	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	21	0	0	17	9	34.62	-	-	-	A	133418072	G	A	133418072	1	1	883	0	1	0	0	0	0	0	0	0	3366	1392	48	4		4	CHFR	12	133418072	RNA	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	24814128	133418072	433823	33	71933										
GNG2	0	genome.wustl.edu	37	chr14	52433435	52433435	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	aggggcctgaagagcctccgGgctcctgggacattgatgta	15	10	0	3			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	14	52433435	52433435	G	T	SNP	GNG2	ENST00000553299	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GNG2	HGNC	ENSG00000186469	42	0	0	25	4	13.79	-	-	-	T	52433435	G	T	52433435	1	4	883	0	1	0	0	0	0	0	0	0	6579	1247	43	4		4	GNG2	14	52433435	RNA	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		52433435	54916105	34	71934										
UQCRC2	0	genome.wustl.edu	37	chr16	21979966	21979966	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cagttacattacttcgttcaGaaccatttcacaagtgcaag	6	10	2	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	16	21979966	21979966	G	A	SNP	UQCRC2	ENST00000268379	human	ensembl	69_37n	1	known	silent	c.630	p.Q210	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC2	HGNC	ENSG00000140740	111	0	0	137	18	11.61	-	-	-	A	21979966	G	A	21979966	2	1	883	1	0	0	0	0	0	0	0	1	17117	933	33	2		2	UQCRC2	16	21979966	Silent	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		21979966	68374787	35	71935										
ATP2A1	0	genome.wustl.edu	37	chr16	28914702	28914703	+	Frame_Shift_Del	DEL	CA	CA	-													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gctcatggtcctcaagatctCactgccagtcattgggctcg							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	16	28914702	28914703	CA	-	DEL	ATP2A1	ENST00000357084	human	ensembl	69_37n	1	known	frame_shift_del	c.2921_2922	p.L975fs	0.999:0.077	pfam_ATPase_P-typ_cation-transptr_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	64	0	0	31	54	63.53	-	-	-	-	28914703	CA	-	28914702	7	5	883	1	0	1	0	1	0	0	0	0	1140	838	29	0	3003	0	ATP2A1	16	28914702	Frame_Shift_Del	DEL	CA	TCGA-E9-A54Y-01A-11D-A25Q-09	6934736	28914702	61440051	36	71936										
TNK1	0	genome.wustl.edu	37	chr17	7288067	7288067	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tcccacctggaggggctgctGcaagaggtgggaacccccga	15	13	0	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	17	7288067	7288067	G	T	SNP	TNK1	ENST00000576812	human	ensembl	69_37n	1	known	silent	c.1131	p.L377	0.341	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292	79	0	0	31	4	11.43	-	-	-	T	7288067	G	T	7288067	2	4	883	1	0	0	0	0	0	0	0	1	16412	1306	46	4		4	TNK1	17	7288067	Silent	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		7288067	73907143	37	71937										
TP53I13	0	genome.wustl.edu	37	chr17	27899465	27899465	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	acagaggctcaggtgcccaaCgggcaaggcagcccaggggg	17	12	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	17	27899465	27899465	C	T	SNP	TP53I13	ENST00000301057	human	ensembl	69_37n	1	known	silent	c.819	p.N273	0.389	NULL	NULL	-	no_errors	TP53I13	HGNC	ENSG00000167543	30	0	0	23	7	23.33	-	-	-	T	27899465	C	T	27899465	2	4	883	1	0	0	0	0	0	0	0	1	16482	535	19	1		1	TP53I13	17	27899465	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	20611398	27899465	53295745	38	71938										
SP6	0	genome.wustl.edu	37	chr17	45925439	45925439	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cccggatgaaggtcccaccaCgagccatcctccgcgcctgg	11	18	0	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	17	45925439	45925439	C	T	SNP	SP6	ENST00000342234	human	ensembl	69_37n	-1	known	silent	c.357	p.S119	0.704	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120	46	0	0	53	6	10.17	-	-	-	T	45925439	C	T	45925439	2	4	883	1	0	0	0	0	0	0	0	1	15057	523	19	1		1	SP6	17	45925439	Silent	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	18025974	45925439	35269771	39	71939										
ATP5A1	0	genome.wustl.edu	37	chr18	43667372	43667372	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gtctctaaaatactctcccaTggaacagccagagtaaggag	9	10	2	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	18	43667372	43667372	T	C	SNP	ATP5A1	ENST00000282050	human	ensembl	69_37n	-1	known	missense	c.886	p.M296V	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/A1-cplx_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234	44	0	0	26	13	33.33	-	-	-	C	43667372	T	C	43667372	3	2	883	1	0	0	0	0	1	0	0	0	1151	1464	51	5	799	5	ATP5A1	18	43667372	Missense_Mutation	SNP	T	TCGA-E9-A54Y-01A-11D-A25Q-09		43667372	34409876	40	71940										
UHRF1	0	genome.wustl.edu	37	chr19	4962030	4962031	+	RNA	DEL	GG	GG	-													0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	ggagcaatgttatttttaaaGggtttttttcacctccttat							TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	19	4962030	4962031	GG	-	DEL	UHRF1	ENST00000262952	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	9	0	0	2	4	66.67	-	-	-	-	4962031	GG	-	4962030	6	5	883	0	1	1	0	1	0	0	0	0	17064	1015	35	0		0	UHRF1	19	4962030	RNA	DEL	GG	TCGA-E9-A54Y-01A-11D-A25Q-09		4962030	54166953	41	71941										
ARFGEF2	0	genome.wustl.edu	37	chr20	47589751	47589751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	tgctgctaacatttttgagcGccttgtaaatgatttatcca	7	8	0	2			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	20	47589751	47589751	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.1595	p.R532H	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	75	0	0	50	8	13.79	-	-	-	A	47589751	G	A	47589751	3	1	883	1	0	0	0	0	1	0	0	0	855	1087	38	1	1641	1	ARFGEF2	20	47589751	Missense_Mutation	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09		47589751	15435769	42	71942										
RNF114	0	genome.wustl.edu	37	chr20	48552965	48552965	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	gcaagatggcggcgcaacagCgggactgcgggggtgctgcg	20	10	0	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	20	48552965	48552965	C	G	SNP	RNF114	ENST00000244061	human	ensembl	69_37n	1	known	missense	c.16	p.R6G	0.000	NULL	pfam_Di19_RING_finger_144,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF114	HGNC	ENSG00000124226	8	0	0	4	4	50	-	-	-	G	48552965	C	G	48552965	3	3	883	1	0	0	0	0	1	0	0	0	13515	759	27	3	18	3	RNF114	20	48552965	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09	963214	48552965	14472555	43	71943										
NHS	0	genome.wustl.edu	37	chrX	17746847	17746847	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	agcagagggtgtgttcgtgtCtccaaacaaacctcgaacaa	10	10	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	X	17746847	17746847	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	missense	c.4238	p.S1413F	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	46	0	0	11	11	50	-	-	-	T	17746847	C	T	17746847	3	4	883	1	0	0	0	0	1	0	0	0	10483	913	32	2	4369	2	NHS	23	17746847	Missense_Mutation	SNP	C	TCGA-E9-A54Y-01A-11D-A25Q-09		17746847	137523713	44	71944										
FAM127A	0	genome.wustl.edu	37	chrX	134167432	134167432	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	3	0.848714113012736	1.10803689064559	0	1.21356421356421	0.181818181818182	0.738198193588003	0	cagttagttttgcccataacGcagtattctgagtttgcaac	8	9	1	1			TCGA-E9-A54Y-01A-11D-A25Q-09	TCGA-E9-A54Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fafdb0f0-8793-4fa5-aad9-7edb0fe378a3	dd45289a-3543-448a-ad91-b35d282448f5	X	134167432	134167432	G	A	SNP	FAM127A	ENST00000464369	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127A	HGNC	ENSG00000134590	67	0	0	13	6	31.58	-	-	-	A	134167432	G	A	134167432	1	1	883	0	1	0	0	0	0	0	0	0	5471	1102	38	1		1	FAM127A	23	134167432	RNA	SNP	G	TCGA-E9-A54Y-01A-11D-A25Q-09	116420585	134167432	21103128	45	71945										
FBXO2	0	genome.wustl.edu	37	chr1	11708829	11708829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagacggagtcctgccccccGtgctcgaagcggacgaagcg	14	14	0	1			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	11708829	11708829	G	A	SNP	FBXO2	ENST00000354287	human	ensembl	69_37n	-1	known	silent	c.813	p.H271	0.999	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661	118	1	0.84	91	13	12.5	-	-	-	A	11708829	G	A	11708829	2	1	884	1	0	0	0	0	0	0	0	1	5778	1136	40	1		1	FBXO2	1	11708829	Silent	SNP	G	TCGA-E9-A5FK-01A-11D-A27P-09		11708829	237541792	1	71946										
ZNF687	0	genome.wustl.edu	37	chr1	151259169	151259169	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gggagccctgaaccttccctCccaggaactccccactctcc	7	20	1	1			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	151259169	151259169	C	T	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	1	known	silent	c.402	p.L134	0.548	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	49	0	0	42	5	10.64	-	-	-	T	151259169	C	T	151259169	2	4	884	1	0	0	0	0	0	0	0	1	18188	842	30	2		2	ZNF687	1	151259169	Silent	SNP	C	TCGA-E9-A5FK-01A-11D-A27P-09	139550340	151259169	97991452	2	71947										
PKLR	0	genome.wustl.edu	37	chr1	155265263	155265263	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgcggatctccggtccctTggtgtccagggcgatggcca	15	12	1	0			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	155265263	155265263	T	G	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.472	p.K158Q	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	81	0	0	70	20	22.22	-	-	-	G	155265263	T	G	155265263	3	3	884	1	0	0	0	0	1	0	0	0	12050	1821	63	5	1284	5	PKLR	1	155265263	Missense_Mutation	SNP	T	TCGA-E9-A5FK-01A-11D-A27P-09	4006094	155265263	93985358	3	71948										
ZBTB41	0	genome.wustl.edu	37	chr1	197144179	197144179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caaggtgtacgcttttgtaaTgaacagtgagatgatcccta	10	7	0	3			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	197144179	197144179	T	C	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	missense	c.1946	p.H649R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	45	0	0	58	8	12.12	-	-	-	C	197144179	T	C	197144179	3	2	884	1	0	0	0	0	1	0	0	0	17639	1464	51	5	795	5	ZBTB41	1	197144179	Missense_Mutation	SNP	T	TCGA-E9-A5FK-01A-11D-A27P-09	41878916	197144179	52106442	4	71949										
C2orf42	0	genome.wustl.edu	37	chr2	70377626	70377626	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcagctcgccaatcttagaTtggggaaggatatctgggat	13	8	2	1			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	2	70377626	70377626	T	C	SNP	C2orf42	ENST00000264434	human	ensembl	69_37n	-1	known	silent	c.1587	p.Q529	0.062	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998	27	0	0	16	3	15.79	-	-	-	C	70377626	T	C	70377626	2	2	884	1	0	0	0	0	0	0	0	1	2186	1490	52	5		5	C2orf42	2	70377626	Silent	SNP	T	TCGA-E9-A5FK-01A-11D-A27P-09		70377626	172821747	5	71950										
IFT122	0	genome.wustl.edu	37	chr3	129225273	129225274	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	0	0	1	1	0	gttccacaaggctgggcgacAgagagaagcggtccaggtgc							TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	3	129225273	129225274	AG	-	DEL	IFT122	ENST00000296266	human	ensembl	69_37n	1	known	frame_shift_del	c.2825_2826	p.E944fs	1.000:0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	79	0	0	101	15	12.93	-	-	-	-	129225274	AG	-	129225273	7	5	884	1	0	1	0	1	0	0	0	0	7609	188	7	0	2915	0	IFT122	3	129225273	Frame_Shift_Del	DEL	AG	TCGA-E9-A5FK-01A-11D-A27P-09		129225273	68797157	6	71951										
DNAJC13	0	genome.wustl.edu	37	chr3	132192020	132192020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagccagtggttcttcgaaAgagaagacaaagaataaaaa	10	5	1	3			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	3	132192020	132192020	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	missense	c.2240	p.K747R	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	70	0	0	58	10	14.49	-	-	-	G	132192020	A	G	132192020	3	3	884	1	0	0	0	0	1	0	0	0	4667	72	3	5	2318	5	DNAJC13	3	132192020	Missense_Mutation	SNP	A	TCGA-E9-A5FK-01A-11D-A27P-09	2966747	132192020	65830410	7	71952										
HTT	0	genome.wustl.edu	37	chr4	3156030	3156030	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctattttaggcagccttgcCttctctaacaaacccccctt	4	15	2	0			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	4	3156030	3156030	C	G	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.3509	p.P1170R	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	21	0	0	32	6	15.79	-	-	-	G	3156030	C	G	3156030	3	3	884	1	0	0	0	0	1	0	0	0	7511	681	24	4	3615	4	HTT	4	3156030	Missense_Mutation	SNP	C	TCGA-E9-A5FK-01A-11D-A27P-09		3156030	187998246	8	71953										
LRRC66	0	genome.wustl.edu	37	chr4	52883636	52883636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggtatatcacactttccggtAaaagaacaatttgtcagaat	7	7	2	2			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	4	52883636	52883636	A	C	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	missense	c.144	p.F48L	0.037	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	16	0	0	27	6	18.18	-	-	-	C	52883636	A	C	52883636	3	2	884	1	0	0	0	0	1	0	0	0	9084	359	13	5	2514	5	LRRC66	4	52883636	Missense_Mutation	SNP	A	TCGA-E9-A5FK-01A-11D-A27P-09	49727606	52883636	138270640	9	71954										
GLT6D1	0	genome.wustl.edu	37	chr9	138517918	138517918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggtgagtggcacctacctgCcagtagcaaagacggccagg	14	11	0	2			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	9	138517918	138517918	C	T	SNP	GLT6D1	ENST00000371763	human	ensembl	69_37n	-1	known	missense	c.254	p.G85D	0.000	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007	63	0	0	69	10	12.66	-	-	-	T	138517918	C	T	138517918	3	4	884	1	0	0	0	0	1	0	0	0	6520	739	26	4	584	4	GLT6D1	9	138517918	Missense_Mutation	SNP	C	TCGA-E9-A5FK-01A-11D-A27P-09		138517918	2695513	10	71955										
PPIF	0	genome.wustl.edu	37	chr10	81113525	81113527	+	In_Frame_Del	DEL	TAG	TAG	-													0	0	1	0	0	0	1	1	0	catggacgtcgtgaagaaaaTagaatctttcggctctaaga							TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	TAG	TAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	10	81113525	81113527	TAG	-	DEL	PPIF	ENST00000225174	human	ensembl	69_37n	1	known	in_frame_del	c.551_553	p.IE184in_frame_delK	1.000:0.902:1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIF	HGNC	ENSG00000108179	41	0	0	25	3	10.71	-	-	-	-	81113527	TAG	-	81113525	7	5	884	1	0	1	0	1	0	0	0	0	12400	1406	49	0	573	0	PPIF	10	81113525	In_Frame_Del	DEL	TAG	TCGA-E9-A5FK-01A-11D-A27P-09		81113525	54421222	11	71956										
NELL1	0	genome.wustl.edu	37	chr11	21305884	21305884	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gagcatgagagtgtgaaaggAgtgacagagagcctaaagat	15	4	0	5			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	11	21305884	21305884	A	G	SNP	NELL1	ENST00000529218	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.202	-	-	-	no_errors	NELL1	HGNC	ENSG00000165973	50	0	0	60	12	16.67	-	-	-	G	21305884	A	G	21305884	1	3	884	0	1	0	0	0	0	0	0	0	10405	319	11	5		5	NELL1	11	21305884	RNA	SNP	A	TCGA-E9-A5FK-01A-11D-A27P-09		21305884	113700632	12	71957										
SAFB2	0	genome.wustl.edu	37	chr19	5621373	5621373	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tggcttctaactcgatgccaAtttcatcaggatcttgcccc	7	13	4	0			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	19	5621373	5621373	A	G	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.221	p.I74T	0.579	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	41	0	0	53	9	14.52	-	-	-	G	5621373	A	G	5621373	3	3	884	1	0	0	0	0	1	0	0	0	13893	101	4	5	2720	5	SAFB2	19	5621373	Missense_Mutation	SNP	A	TCGA-E9-A5FK-01A-11D-A27P-09		5621373	53507610	13	71958										
CACNA1A	0	genome.wustl.edu	37	chr19	13563741	13563741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccagccattcctcaagtagGagcctttgtggaaggcaaac	10	11	1	0			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	19	13563741	13563741	G	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.488	p.S163Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	51	0	0	48	7	12.73	-	-	-	T	13563741	G	T	13563741	3	4	884	1	0	0	0	0	1	0	0	0	2563	1174	41	2	7326	2	CACNA1A	19	13563741	Missense_Mutation	SNP	G	TCGA-E9-A5FK-01A-11D-A27P-09	7942368	13563741	45565242	14	71959										
XRN2	0	genome.wustl.edu	37	chr20	21314341	21314341	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcattcctttttggttgtaGtatttggaaagagaactcac	9	6	1	1			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	20	21314341	21314341	G	A	SNP	XRN2	ENST00000377191	human	ensembl	69_37n	1	known	splice_site	c.934-1	e11-1	1.000	-	-	-	no_errors	XRN2	HGNC	ENSG00000088930	49	0	0	70	14	16.67	-	-	-	A	21314341	G	A	21314341	5	1	884	1	0	0	0	0	0	0	1	0	17557	1043	36	4	975	4	XRN2	20	21314341	Splice_Site	SNP	G	TCGA-E9-A5FK-01A-11D-A27P-09		21314341	41711179	15	71960										
PINK1	0	genome.wustl.edu	37	chr1	20964358	20964358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	atttttacccagaaaagcaaGccggggcctgacccgttgga	11	11	0	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	20964358	20964358	G	T	SNP	PINK1	ENST00000321556	human	ensembl	69_37n	1	known	missense	c.411	p.K137N	0.977	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PINK1	HGNC	ENSG00000158828	71	0	0	41	7	14.58	-	-	-	T	20964358	G	T	20964358	3	4	885	1	0	0	0	0	1	0	0	0	12006	962	34	4	417	4	PINK1	1	20964358	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09		20964358	228286263	1	71961										
MPL	0	genome.wustl.edu	37	chr1	43806060	43806060	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttacttctttgactttagtgGcacttggactgcaatgcttt	8	8	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	43806060	43806060	G	T	SNP	MPL	ENST00000372470	human	ensembl	69_37n	1	known	missense	c.856	p.A286S	1.000	superfamily_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400	121	0	0	101	12	10.62	-	-	-	T	43806060	G	T	43806060	3	4	885	1	0	0	0	0	1	0	0	0	9802	1203	42	4	878	4	MPL	1	43806060	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	22841702	43806060	205444561	2	71962										
DUSP27	0	genome.wustl.edu	37	chr1	167097532	167097532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ctcagaaagggaagagtcccCagaaccacagcgcccaaatt	9	13	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	167097532	167097532	C	T	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.3164	p.P1055L	0.994	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	34	0	0	30	5	14.29	-	-	-	T	167097532	C	T	167097532	3	4	885	1	0	0	0	0	1	0	0	0	4859	594	21	4	3182	4	DUSP27	1	167097532	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	123291472	167097532	82153089	3	71963										
DDX59	0	genome.wustl.edu	37	chr1	200635772	200635772	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	atctctgcttttgtccaactGaaggtcttctgggtctggtt	10	9	4	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	200635772	200635772	G	A	SNP	DDX59	ENST00000331314	human	ensembl	69_37n	-1	known	nonsense	c.97	p.Q33*	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197	55	0	0	37	26	41.27	-	-	-	A	200635772	G	A	200635772	4	1	885	1	0	0	0	0	0	1	0	0	4407	1299	45	2	1790	2	DDX59	1	200635772	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	33538240	200635772	48614849	4	71964										
ADORA1	0	genome.wustl.edu	37	chr1	203134377	203134377	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agatcctcacactctgccctCctctcccccaggtacaagat	5	18	3	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	203134377	203134377	C	A	SNP	ADORA1	ENST00000464019	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.137	-	-	-	no_errors	ADORA1	HGNC	ENSG00000163485	79	0	0	51	28	35.44	-	-	-	A	203134377	C	A	203134377	1	1	885	0	1	0	0	0	0	0	0	0	326	870	30	2		2	ADORA1	1	203134377	RNA	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	2498605	203134377	46116244	5	71965										
PRELP	0	genome.wustl.edu	37	chr1	203453039	203453039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgccgcccagggtccccaccGccattcaccagctctacctg	8	20	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	203453039	203453039	G	A	SNP	PRELP	ENST00000343110	human	ensembl	69_37n	1	known	missense	c.727	p.A243T	0.890	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	54	0	0	33	12	26.67	-	-	-	A	203453039	G	A	203453039	3	1	885	1	0	0	0	0	1	0	0	0	12554	1087	38	1	729	1	PRELP	1	203453039	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	318662	203453039	45797582	6	71966										
TP53BP2	0	genome.wustl.edu	37	chr1	223983917	223983917	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aagctgacttggatgggtatGatgggacagagatggtctcc	15	6	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	223983917	223983917	G	C	SNP	TP53BP2	ENST00000343537	human	ensembl	69_37n	-1	known	nonsense	c.2324	p.S775*	0.552	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	54	0	0	39	12	23.53	-	-	-	C	223983917	G	C	223983917	4	2	885	1	0	0	0	0	0	1	0	0	16480	1294	45	2	1104	2	TP53BP2	1	223983917	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	20530878	223983917	25266704	7	71967										
OBSCN	0	genome.wustl.edu	37	chr1	228473949	228473949	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agatcgatgcccagcccgggGgctaccacgtgctgaccctg	13	15	0	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	228473949	228473949	G	C	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.9175	p.G3059R	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	65	0	0	35	14	28.57	-	-	-	C	228473949	G	C	228473949	3	2	885	1	0	0	0	0	1	0	0	0	10885	1232	43	4	9305	4	OBSCN	1	228473949	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	4490032	228473949	20776672	8	71968										
OBSCN	0	genome.wustl.edu	37	chr1	228525020	228525020	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	atccccccgccatggccgatCacggccatcctccagcatcc	7	21	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	228525020	228525020	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	missense	c.16736	p.S5579L	0.981	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	90	0	0	65	19	22.62	-	-	-	T	228525020	C	T	228525020	3	4	885	1	0	0	0	0	1	0	0	0	10885	838	29	2	16994	2	OBSCN	1	228525020	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	51071	228525020	20725601	9	71969										
ARID4B	0	genome.wustl.edu	37	chr1	235345091	235345091	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ggtttggagccagtggttctGatactgttacagaagactgc	13	7	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	1	235345091	235345091	G	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	nonsense	c.3143	p.S1048*	0.992	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	110	0	0	67	9	11.84	-	-	-	C	235345091	G	C	235345091	4	2	885	1	0	0	0	0	0	1	0	0	922	1294	45	2	815	2	ARID4B	1	235345091	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	6820071	235345091	13905530	10	71970										
CRIM1	0	genome.wustl.edu	37	chr2	36764583	36764583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gaccttgacagctgcacccaCtgctactgcctgcagggcca	10	16	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	36764583	36764583	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	69_37n	1	known	silent	c.2517	p.H839	1.000	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Prot_inh_I15_antistasin-like,superfamily_Prot_inh_I14/15_hirudin/antisn,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	84	0	0	42	17	28.81	-	-	-	T	36764583	C	T	36764583	2	4	885	1	0	0	0	0	0	0	0	1	3903	564	20	4		4	CRIM1	2	36764583	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		36764583	206434790	11	71971										
ASB3	0	genome.wustl.edu	37	chr2	53897501	53897501	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aacattctcactgaactactGgccccccaaaacctaaccta	3	16	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	53897501	53897501	G	A	SNP	ASB3	ENST00000482829	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB3	HGNC	ENSG00000115239	44	0	0	36	14	28	-	-	-	A	53897501	G	A	53897501	1	1	885	0	1	0	0	0	0	0	0	0	1028	1363	47	4		4	ASB3	2	53897501	RNA	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	17132918	53897501	189301872	12	71972										
XPO1	0	genome.wustl.edu	37	chr2	61721114	61721114	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gcaacggagaggcagatgtaGagaatggactctctctatag	13	7	2	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	61721114	61721114	G	C	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1160	p.S387C	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	28	0	0	35	5	12.5	-	-	-	C	61721114	G	C	61721114	3	2	885	1	0	0	0	0	1	0	0	0	17542	942	33	2	2111	2	XPO1	2	61721114	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	7823613	61721114	181478259	13	71973										
HOXD13	0	genome.wustl.edu	37	chr2	176958331	176958331	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ctggacgctggctaacgggtGgaacagccaggtgtactgca	15	10	0	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	176958331	176958331	G	A	SNP	HOXD13	ENST00000392539	human	ensembl	69_37n	1	putative	nonsense	c.713	p.W238*	1.000	NULL	pfam_Homeodomain,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HOXD13	HGNC	ENSG00000128714	81	0	0	49	21	30	-	-	-	A	176958331	G	A	176958331	4	1	885	1	0	0	0	0	0	1	0	0	7373	1357	47	4	715	4	HOXD13	2	176958331	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	115237217	176958331	66241042	14	71974										
TTN	0	genome.wustl.edu	37	chr2	179398054	179398054	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gactctataataacccgtgtCttcaggcaaagtgtccctga	8	11	3	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	179398054	179398054	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.95584	p.D31862H	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	73	0	0	69	8	10.39	-	-	-	G	179398054	C	G	179398054	3	3	885	1	0	0	0	0	1	0	0	0	16832	913	32	2	4711	2	TTN	2	179398054	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	2439723	179398054	63801319	15	71975										
FSIP2	0	genome.wustl.edu	37	chr2	186669694	186669694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aaaaaggatgctcattcctcAgtaaattagctggttttatt	7	6	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	2	186669694	186669694	A	G	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.15928	p.S5310G	0.982	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	30	0	0	31	5	13.89	-	-	-	G	186669694	A	G	186669694	3	3	885	1	0	0	0	0	1	0	0	0	6124	188	7	5	15994	5	FSIP2	2	186669694	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	7271640	186669694	56529679	16	71976										
BTD	0	genome.wustl.edu	37	chr3	15686715	15686715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgggcttcacacagtacatgGcacttactacatccaagtgt	8	11	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	3	15686715	15686715	G	A	SNP	BTD	ENST00000303498	human	ensembl	69_37n	1	known	missense	c.1352	p.G451D	1.000	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814	63	0	0	24	17	41.46	-	-	-	A	15686715	G	A	15686715	3	1	885	1	0	0	0	0	1	0	0	0	1559	1203	42	4	1366	4	BTD	3	15686715	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09		15686715	182335715	17	71977										
FLNB	0	genome.wustl.edu	37	chr3	58140519	58140519	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ggtttctctttgctctcagcTgagttcagcatttggacccg	10	11	3	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	3	58140519	58140519	T	C	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	silent	c.6636	p.A2212	0.029	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	79	0	0	37	19	33.93	-	-	-	C	58140519	T	C	58140519	2	2	885	1	0	0	0	0	0	0	0	1	5980	1594	55	5		5	FLNB	3	58140519	Silent	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	42453804	58140519	139881911	18	71978										
CLDN18	0	genome.wustl.edu	37	chr3	137748728	137748728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gatgtgcatcgcctgccgggGcctggcaccagaagaaacca	13	13	0	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	3	137748728	137748728	G	A	SNP	CLDN18	ENST00000183605	human	ensembl	69_37n	1	known	missense	c.593	p.G198D	1.000	prints_Claudin18	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405	111	0	0	110	58	34.52	-	-	-	A	137748728	G	A	137748728	3	1	885	1	0	0	0	0	1	0	0	0	3509	1203	42	4	831	4	CLDN18	3	137748728	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	79608209	137748728	60273702	19	71979										
HTT	0	genome.wustl.edu	37	chr4	3237310	3237310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agatgtgtggggtgatgctgTctggaagtgaggagtccacc	17	6	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	4	3237310	3237310	T	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.8590	p.S2864P	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	114	0	0	39	16	29.09	-	-	-	C	3237310	T	C	3237310	3	2	885	1	0	0	0	0	1	0	0	0	7511	1667	58	5	8840	5	HTT	4	3237310	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09		3237310	187916966	20	71980										
DHX15	0	genome.wustl.edu	37	chr4	24531273	24531273	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gatgtaattctttgttgttaGaacaaactcattataaagca	6	5	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	4	24531273	24531273	G	C	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.2221	p.L741V	0.999	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	113	0	0	63	23	26.74	-	-	-	C	24531273	G	C	24531273	3	2	885	1	0	0	0	0	1	0	0	0	4537	933	33	2	174	2	DHX15	4	24531273	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	21293963	24531273	166623003	21	71981										
TMPRSS11D	0	genome.wustl.edu	37	chr4	68708316	68708316	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tctgatgaactgatttcttaAatttgattctttgaatgttt	6	4	3	5			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	4	68708316	68708316	A	C	SNP	TMPRSS11D	ENST00000283916	human	ensembl	69_37n	-1	known	missense	c.277	p.L93V	0.868	pirsf_Pept_S1A_HAT/DESC1,pfam_SEA,smart_SEA,pfscan_SEA	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_SEA,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802	36	0	0	8	14	63.64	-	-	-	C	68708316	A	C	68708316	3	2	885	1	0	0	0	0	1	0	0	0	16336	11	1	5	1007	5	TMPRSS11D	4	68708316	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	44177043	68708316	122445960	22	71982										
MSH3	0	genome.wustl.edu	37	chr5	79950579	79950579	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aagcctgcgtcgggcggcctCgctgcctccagctcagcccc	12	19	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	79950579	79950579	C	T	SNP	MSH3	ENST00000265081	human	ensembl	69_37n	1	known	silent	c.33	p.L11	0.000	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	68	0	0	40	25	38.46	-	-	-	T	79950579	C	T	79950579	2	4	885	1	0	0	0	0	0	0	0	1	9943	871	31	1		1	MSH3	5	79950579	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		79950579	100964681	23	71983										
SEPT8	0	genome.wustl.edu	37	chr5	132109742	132109742	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cagcaaggaggctactggccGtttttacaagatggggagat	14	7	0	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	132109742	132109742	G	A	SNP	SEPT8	ENST00000492490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	SEPT8	HGNC	ENSG00000164402	57	0	0	36	4	10	-	-	-	A	132109742	G	A	132109742	1	1	885	0	1	0	0	0	0	0	0	0	14158	1160	40	1		1	SEPT8	5	132109742	RNA	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	52159163	132109742	48805518	24	71984										
FSTL4	0	genome.wustl.edu	37	chr5	132569175	132569175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agcatggcaggtgtaattgcCcatgtggatggtggtcacct	14	8	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	132569175	132569175	C	T	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.949	p.G317S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	203	0	0	117	15	11.36	-	-	-	T	132569175	C	T	132569175	3	4	885	1	0	0	0	0	1	0	0	0	6128	623	22	4	1615	4	FSTL4	5	132569175	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	459433	132569175	48346085	25	71985										
PCDHA13	0	genome.wustl.edu	37	chr5	140263090	140263090	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cattagtgctggacagcgccCtggaccgcgagagcgtatca	13	12	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	140263090	140263090	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	silent	c.1237	p.L413	0.233	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	174	0	0	82	59	41.84	-	-	-	T	140263090	C	T	140263090	2	4	885	1	0	0	0	0	0	0	0	1	11596	680	24	4		4	PCDHA13	5	140263090	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	7693915	140263090	40652170	26	71986										
PCDHGA4	0	genome.wustl.edu	37	chr5	140736720	140736720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gtcgtccaggaccatggccaGccccctctctcggccaccgt	10	19	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	140736720	140736720	G	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	missense	c.1953	p.Q651H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	152	0	0	100	34	25.37	-	-	-	T	140736720	G	T	140736720	3	4	885	1	0	0	0	0	1	0	0	0	11629	962	34	4	1955	4	PCDHGA4	5	140736720	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	473630	140736720	40178540	27	71987										
RBM22	0	genome.wustl.edu	37	chr5	150080199	150080199	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gaagtccatcacgacccgatCgcgggagggggcgctgtctg	16	12	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	150080199	150080199	C	T	SNP	RBM22	ENST00000521464	human	ensembl	69_37n	-1	putative	missense	c.272	p.R91Q	0.711	NULL	NULL	-	no_stop_codon	RBM22	HGNC	ENSG00000086589	11	0	0	9	5	35.71	-	-	-	T	150080199	C	T	150080199	3	4	885	1	0	0	0	0	1	0	0	0	13205	899	31	1		1	RBM22	5	150080199	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	9343479	150080199	30835061	28	71988										
KIAA1191	0	genome.wustl.edu	37	chr5	175782695	175782695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tatcatcatagctgactgccCggcggtatatcccgatgggc	11	12	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	175782695	175782695	C	T	SNP	KIAA1191	ENST00000298569	human	ensembl	69_37n	-1	known	missense	c.86	p.R29Q	1.000	NULL	NULL	-	no_errors	KIAA1191	HGNC	ENSG00000122203	54	0	0	37	13	26	-	-	-	T	175782695	C	T	175782695	3	4	885	1	0	0	0	0	1	0	0	0	8264	652	23	1	855	1	KIAA1191	5	175782695	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	25702496	175782695	5132565	29	71989										
MAPK9	0	genome.wustl.edu	37	chr5	179663439	179663439	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	caagactgctgtctgtgtctGaggccagcgtctgctcagtg	13	11	4	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	5	179663439	179663439	G	C	SNP	MAPK9	ENST00000452135	human	ensembl	69_37n	-1	known	nonsense	c.1220	p.S407*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748	74	0	0	52	32	38.1	-	-	-	C	179663439	G	C	179663439	4	2	885	1	0	0	0	0	0	1	0	0	9358	1294	45	2	58	2	MAPK9	5	179663439	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	3880744	179663439	1251821	30	71990										
NOTCH4	0	genome.wustl.edu	37	chr6	32183149	32183149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttgggagcacacaggggaacCtcacagagctggcctggggt	16	10	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	6	32183149	32183149	C	G	SNP	NOTCH4	ENST00000375023	human	ensembl	69_37n	-1	known	missense	c.1875	p.E625D	0.881	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_4,prints_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	108	0	0	59	27	31.4	-	-	-	G	32183149	C	G	32183149	3	3	885	1	0	0	0	0	1	0	0	0	10623	680	24	4	4212	4	NOTCH4	6	32183149	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		32183149	138931918	31	71991										
CAPN11	0	genome.wustl.edu	37	chr6	44144994	44144994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cacaggcacgttctggaccaAcccccagtttaagatctctc	7	15	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	6	44144994	44144994	A	C	SNP	CAPN11	ENST00000398776	human	ensembl	69_37n	1	known	missense	c.1253	p.N418T	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	45	0	0	28	11	28.21	-	-	-	C	44144994	A	C	44144994	3	2	885	1	0	0	0	0	1	0	0	0	2649	43	2	5	1299	5	CAPN11	6	44144994	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	11961845	44144994	126970073	32	71992										
SLC35F1	0	genome.wustl.edu	37	chr6	118635248	118635248	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tcattgggctggtgctctacTcctccacctccacctacata	6	16	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	6	118635248	118635248	T	A	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	1	known	missense	c.1060	p.S354T	1.000	pfam_DUF914_euk,pfam_DMT	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	144	0	0	117	16	11.85	-	-	-	A	118635248	T	A	118635248	3	1	885	1	0	0	0	0	1	0	0	0	14677	1551	54	5	1090	5	SLC35F1	6	118635248	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	74490254	118635248	52479819	33	71993										
ARID1B	0	genome.wustl.edu	37	chr6	157502127	157502127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ccagctcctccaccactactGgggagaagatcacgaaggtg	11	13	1	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	6	157502127	157502127	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	69_37n	1	known	missense	c.3280	p.G1094R	0.994	superfamily_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	66	0	0	55	8	12.7	-	-	-	A	157502127	G	A	157502127	3	1	885	1	0	0	0	0	1	0	0	0	916	1348	47	4	3206	4	ARID1B	6	157502127	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	38866879	157502127	13612940	34	71994										
NSUN5	0	genome.wustl.edu	37	chr7	72717463	72717463	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gcggctctttgctgtctcttCtttctctttggggctgggct	12	11	4	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	72717463	72717463	C	G	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	missense	c.1350	p.K450N	0.245	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	197	0	0	205	24	10.48	-	-	-	G	72717463	C	G	72717463	3	3	885	1	0	0	0	0	1	0	0	0	10754	922	32	2	71	2	NSUN5	7	72717463	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		72717463	86421200	35	71995										
GTF2IRD2B	0	genome.wustl.edu	37	chr7	74536691	74536691	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	atgccaatcatccatttgcaGgcgttgcagagggactgtgt	12	9	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	74536691	74536691	G	A	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	69_37n	1	known	splice_site	c.239-1	e3-1	0.979	-	-	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428	62	0	0	61	10	14.08	-	-	-	A	74536691	G	A	74536691	5	1	885	1	0	0	0	0	0	0	1	0	6921	1014	35	4	248	4	GTF2IRD2B	7	74536691	Splice_Site	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	1819228	74536691	84601972	36	71996										
PCLO	0	genome.wustl.edu	37	chr7	82764263	82764263	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	acccttttggcattggcttgGcatctggtttaggactcatt	10	9	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	82764263	82764263	G	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.2603	p.A868G	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	232	0	0	206	31	13.03	-	-	-	C	82764263	G	C	82764263	3	2	885	1	0	0	0	0	1	0	0	0	11656	1203	42	4	12934	4	PCLO	7	82764263	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	8227572	82764263	76374400	37	71997										
PEX1	0	genome.wustl.edu	37	chr7	92122351	92122351	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttcagatcagctccagtaaaGgagtcagttactgatgctac	9	9	3	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	92122351	92122351	G	T	SNP	PEX1	ENST00000248633	human	ensembl	69_37n	-1	known	silent	c.3123	p.S1041	0.702	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_Asp_de-COase-like_fold,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980	31	0	0	33	18	34.62	-	-	-	T	92122351	G	T	92122351	2	4	885	1	0	0	0	0	0	0	0	1	11809	987	35	4		4	PEX1	7	92122351	Silent	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	9358088	92122351	67016312	38	71998										
ACN9	0	genome.wustl.edu	37	chr7	96810329	96810329	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tctttatctttttaggtgtaTgcaacagcgttattgcaaca	7	7	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	96810329	96810329	T	C	SNP	ACN9	ENST00000432641	human	ensembl	69_37n	1	known	silent	c.180	p.Y60	0.995	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	ACN9	HGNC	ENSG00000196636	97	0	0	57	15	20.83	-	-	-	C	96810329	T	C	96810329	2	2	885	1	0	0	0	0	0	0	0	1	145	1471	51	5		5	ACN9	7	96810329	Silent	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	4687978	96810329	62328334	39	71999										
ZAN	0	genome.wustl.edu	37	chr7	100365628	100365628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	atggcggccagctctgtgggCtgtgtggtgagtttcctggg	18	8	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	100365628	100365628	C	T	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	silent	c.5035	p.L1679	0.973	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	76	0	0	48	26	35.14	-	-	-	T	100365628	C	T	100365628	2	4	885	1	0	0	0	0	0	0	0	1	17610	796	28	4		4	ZAN	7	100365628	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	3555299	100365628	58773035	40	72000										
MUC17	0	genome.wustl.edu	37	chr7	100684489	100684489	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gaagccagttcatctcctccCactgctgaaggtaccagcat	8	14	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	100684489	100684489	C	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.9792	p.P3264	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	152	1	0.65	88	41	31.78	-	-	-	A	100684489	C	A	100684489	2	1	885	1	0	0	0	0	0	0	0	1	10046	581	21	4		4	MUC17	7	100684489	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	318861	100684489	58454174	41	72001										
PTPRN2	0	genome.wustl.edu	37	chr7	158282452	158282452	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	acacaggcctcggacgctccGcagaggccctcctcgagcag	12	17	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	7	158282452	158282452	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	silent	c.207	p.C69	0.487	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	27	0	0	13	9	40.91	-	-	-	A	158282452	G	A	158282452	2	1	885	1	0	0	0	0	0	0	0	1	12891	1079	38	1		1	PTPRN2	7	158282452	Silent	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	57597963	158282452	856211	42	72002										
PRSS55	0	genome.wustl.edu	37	chr8	10386925	10386925	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gggatgaggatatccacttgGaagcctgctcctcccagccc	11	14	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	8	10386925	10386925	G	T	SNP	PRSS55	ENST00000518641	human	ensembl	69_37n	1	known	nonsense	c.4	p.E2*	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRSS55	HGNC	ENSG00000184647	45	0	0	16	22	57.89	-	-	-	T	10386925	G	T	10386925	4	4	885	1	0	0	0	0	0	1	0	0	12714	1189	41	2		2	PRSS55	8	10386925	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09		10386925	135977097	43	72003										
PRUNE2	0	genome.wustl.edu	37	chr9	79325845	79325845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	accttctcccacggggctgtCgtcactgaggaaaacagagc	11	13	2	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	9	79325845	79325845	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.268	p.D90N	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	95	0	0	67	9	11.84	-	-	-	T	79325845	C	T	79325845	3	4	885	1	0	0	0	0	1	0	0	0	12721	884	31	1	7969	1	PRUNE2	9	79325845	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		79325845	61887586	44	72004										
OR13C9	0	genome.wustl.edu	37	chr9	107380401	107380402	+	Frame_Shift_Ins	INS	-	-	A													0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tacattatgaagattagcacINSaaaaaagagtaactcaagcc							TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	9	107380401	107380402	-	A	INS	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	frame_shift_ins	c.85_84	p.V28fs	0.245:0.267	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	73	0	0	68	13	16.05	-	-	-	A	107380402	-	A	107380401	7	5	885	1	0	1	1	0	0	0	0	0	11012	478	17	0	874	0	OR13C9	9	107380401	Frame_Shift_Ins	INS	-	TCGA-E9-A5FL-01A-11D-A27P-09	28054556	107380401	33833030	45	72005										
CRAT	0	genome.wustl.edu	37	chr9	131873438	131873438	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgggttagggtcagtaccacCcacaaagatgacaggtggta	13	8	1	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	9	131873438	131873438	C	T	SNP	CRAT	ENST00000464290	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CRAT	HGNC	ENSG00000095321	40	0	0	21	7	25	-	-	-	T	131873438	C	T	131873438	1	4	885	0	1	0	0	0	0	0	0	0	3877	638	22	4		4	CRAT	9	131873438	RNA	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	24493037	131873438	9339993	46	72006										
SLC18A3	0	genome.wustl.edu	37	chr10	50819842	50819842	+	Frame_Shift_Del	DEL	C	C	-													0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gtgcgcctggcggcgcgctaCccacacctgcagtggctgta							TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	50819842	50819842	C	-	DEL	SLC18A3	ENST00000374115	human	ensembl	69_37n	1	known	frame_shift_del	c.1056	p.P353fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714	109	0	0	42	21	33.33	-	-	-	-	50819842	C	-	50819842	7	5	885	1	0	1	0	1	0	0	0	0	14516	518	18	0	1058	0	SLC18A3	10	50819842	Frame_Shift_Del	DEL	C	TCGA-E9-A5FL-01A-11D-A27P-09		50819842	84714905	47	72007										
USP54	0	genome.wustl.edu	37	chr10	75289313	75289313	+	Frame_Shift_Del	DEL	A	A	-													0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gctgttgttataggaagttgAaagagcacatagagataata							TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	75289313	75289313	A	-	DEL	USP54	ENST00000319786	human	ensembl	69_37n	-1	known	frame_shift_del	c.2185	p.S729fs	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	16	0	0	11	5	31.25	-	-	-	-	75289313	A	-	75289313	7	5	885	1	0	1	0	1	0	0	0	0	17182	261	9	0		0	USP54	10	75289313	Frame_Shift_Del	DEL	A	TCGA-E9-A5FL-01A-11D-A27P-09	24469471	75289313	60245434	48	72008										
NOC3L	0	genome.wustl.edu	37	chr10	96117087	96117087	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tttcttcgcatgaacaggctCactgcaggggaaaaaaagat	10	8	2	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	96117087	96117087	C	T	SNP	NOC3L	ENST00000371350	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	1.000	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	36	0	0	29	4	12.12	-	-	-	T	96117087	C	T	96117087	3	4	885	1	0	0	0	0	1	0	0	0	10586	840	29	2	2122	2	NOC3L	10	96117087	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	20827774	96117087	39417660	49	72009										
PDZD7	0	genome.wustl.edu	37	chr10	102778804	102778804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ctccgtctgcatggctgtgtCcgcccgcccccagcctgggc	12	19	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	102778804	102778804	C	G	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	missense	c.1099	p.D367H	0.998	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	28	0	0	12	8	40	-	-	-	G	102778804	C	G	102778804	3	3	885	1	0	0	0	0	1	0	0	0	11777	855	30	2	466	2	PDZD7	10	102778804	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	6661717	102778804	32755943	50	72010										
PRLHR	0	genome.wustl.edu	37	chr10	120354540	120354540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gcagttgcccaccagccccaCgaccaccacgacgctgtaga	9	18	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	120354540	120354540	C	G	SNP	PRLHR	ENST00000239032	human	ensembl	69_37n	-1	known	missense	c.217	p.V73L	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prolrel_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973	132	0	0	85	42	33.07	-	-	-	G	120354540	C	G	120354540	3	3	885	1	0	0	0	0	1	0	0	0	12611	536	19	3	899	3	PRLHR	10	120354540	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	17575736	120354540	15180207	51	72011										
WDR11	0	genome.wustl.edu	37	chr10	122668442	122668442	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cagaaagaacgtgaatgcttAagattttgaaagtacataat	8	4	0	5			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	122668442	122668442	A	C	SNP	WDR11	ENST00000497136	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR11	HGNC	ENSG00000120008	56	0	0	53	11	17.19	-	-	-	C	122668442	A	C	122668442	1	2	885	0	1	0	0	0	0	0	0	0	17370	377	13	5		5	WDR11	10	122668442	RNA	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	2313902	122668442	12866305	52	72012										
DMBT1	0	genome.wustl.edu	37	chr10	124377576	124377576	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agactggtgaatggaggtgaCaggtgtcgaggccgagtgga	19	5	0	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	10	124377576	124377576	C	G	SNP	DMBT1	ENST00000368915	human	ensembl	69_37n	1	known	missense	c.4935	p.D1645E	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_CUB,pfam_Zona_pellucida_Endoglin/CD105,superfamily_Srcr_rcpt-rel,superfamily_CUB,smart_Srcr_rcpt-rel,smart_CUB,smart_Zona_pellucida_Endoglin/CD105,pfscan_CUB,pfscan_Srcr_rcpt,pfscan_Zona_pellucida_Endoglin/CD105,prints_Srcr_rcpt	-	no_errors	DMBT1	HGNC	ENSG00000187908	423	1	0.24	237	115	32.67	-	-	-	G	124377576	C	G	124377576	3	3	885	1	0	0	0	0	1	0	0	0	4613	477	17	4	4698	4	DMBT1	10	124377576	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	1709134	124377576	11157171	53	72013										
PHRF1	0	genome.wustl.edu	37	chr11	611789	611789	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gagggctgaggccaggcaatCacgggctatgcccggggagc	18	11	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	11	611789	611789	C	T	SNP	PHRF1	ENST00000525848	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PHRF1	HGNC	ENSG00000070047	82	0	0	61	22	26.51	-	-	-	T	611789	C	T	611789	1	4	885	0	1	0	0	0	0	0	0	0	11935	841	29	2		2	PHRF1	11	611789	RNA	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		611789	134394727	54	72014										
FOXM1	0	genome.wustl.edu	37	chr12	2977776	2977776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aaagtagggaaagtggtcctCaatccacgtatagatgtctt	10	7	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	2977776	2977776	C	G	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	missense	c.799	p.E267Q	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	105	0	0	44	45	50.56	-	-	-	G	2977776	C	G	2977776	3	3	885	1	0	0	0	0	1	0	0	0	6066	835	29	2	1634	2	FOXM1	12	2977776	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		2977776	130874119	55	72015										
CCND2	0	genome.wustl.edu	37	chr12	4388007	4388007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	acttcattgagcacatcttgCgcaagctgccccagcagcgg	10	14	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	4388007	4388007	C	T	SNP	CCND2	ENST00000261254	human	ensembl	69_37n	1	known	missense	c.493	p.R165C	0.981	pfam_Cyclin_C,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND2	HGNC	ENSG00000118971	74	0	0	65	9	12.16	-	-	-	T	4388007	C	T	4388007	3	4	885	1	0	0	0	0	1	0	0	0	2946	768	27	1	503	1	CCND2	12	4388007	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	1410231	4388007	129463888	56	72016										
SENP1	0	genome.wustl.edu	37	chr12	48439119	48439119	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cagtcttcacaagagttttcGgtggaggatctcccagacca	10	11	3	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	48439119	48439119	G	A	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	nonsense	c.1921	p.R641*	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	110	0	0	79	16	16.84	-	-	-	A	48439119	G	A	48439119	4	1	885	1	0	0	0	0	0	1	0	0	14134	1124	39	1	17	1	SENP1	12	48439119	Nonsense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	44051112	48439119	85412776	57	72017										
ESPL1	0	genome.wustl.edu	37	chr12	53683238	53683238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aatagcagaccagctgcaggGgctgagccttcaggagatgc	14	10	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	53683238	53683238	G	T	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.4973	p.G1658V	0.002	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	55	0	0	61	14	18.67	-	-	-	T	53683238	G	T	53683238	3	4	885	1	0	0	0	0	1	0	0	0	5290	1232	43	4	5055	4	ESPL1	12	53683238	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	5244119	53683238	80168657	58	72018										
PDE1B	0	genome.wustl.edu	37	chr12	54955245	54955245	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aaagttctctctggtcagttGctcagttctactgggacctg	10	10	5	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	54955245	54955245	G	C	SNP	PDE1B	ENST00000394277	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE1B	HGNC	ENSG00000123360	68	0	0	29	11	27.5	-	-	-	C	54955245	G	C	54955245	1	2	885	0	1	0	0	0	0	0	0	0	11707	1334	46	4		4	PDE1B	12	54955245	RNA	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	1272007	54955245	78896650	59	72019										
RBM19	0	genome.wustl.edu	37	chr12	114383699	114383699	+	Silent	SNP	C	C	A													0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gcatcggccacggcattcggCcccatgaatagtgtgttcca							TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	114383699	114383699	C	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	silent	c.1560	p.G520	0.995	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	101	0	0	62	24	27.91	-	-	-	A	114383699	C	A	114383699	2	1	885	1	0	0	0	0	0	0	0	1	13204	726	26	4		4	RBM19	12	114383699	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	59428454	114383699	19468196	60	72020	512	2								
RBM19	0	genome.wustl.edu	37	chr12	114383700	114383700	+	Missense_Mutation	SNP	C	C	G													0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	catcggccacggcattcggcCccatgaatagtgtgttccag							TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	12	114383700	114383700	C	G	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.1559	p.G520A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	102	0	0	63	24	27.59	-	-	-	G	114383700	C	G	114383700	3	3	885	1	0	0	0	0	1	0	0	0	13204	623	22	4	1371	4	RBM19	12	114383700	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	1	114383700	19468195	61	72021	512	2								
PTGER2	0	genome.wustl.edu	37	chr14	52782109	52782109	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gtctgctccttgcctttcacGgtaagtcactccctacgttt	7	14	3	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	14	52782109	52782109	G	A	SNP	PTGER2	ENST00000245457	human	ensembl	69_37n	1	known	silent	c.843	p.T281	0.882	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384	52	0	0	30	17	36.17	-	-	-	A	52782109	G	A	52782109	2	1	885	1	0	0	0	0	0	0	0	1	12824	1130	39	1		1	PTGER2	14	52782109	Silent	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09		52782109	54567431	62	72022										
CCPG1	0	genome.wustl.edu	37	chr15	55664161	55664161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aaacggtcttcttcctagcaCggcgtcgtctaaaggcagga	11	11	3	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	15	55664161	55664161	C	T	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.536	p.R179H	0.956	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	39	0	0	27	11	28.95	-	-	-	T	55664161	C	T	55664161	3	4	885	1	0	0	0	0	1	0	0	0	2967	536	19	1	1749	1	CCPG1	15	55664161	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		55664161	46867231	63	72023										
SIN3A	0	genome.wustl.edu	37	chr15	75664516	75664516	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tatctacccaggcctggaatCtctgatgtagacgcttgctt	9	11	2	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	15	75664516	75664516	C	T	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.3626	p.R1209K	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	57	0	0	19	12	38.71	-	-	-	T	75664516	C	T	75664516	3	4	885	1	0	0	0	0	1	0	0	0	14414	913	32	2	199	2	SIN3A	15	75664516	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	20000355	75664516	26866876	64	72024										
HDGFRP3	0	genome.wustl.edu	37	chr15	83826264	83826264	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tatcaccttcttcctcactgCttgcatctgcagtatttcca	4	14	4	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	15	83826264	83826264	C	A	SNP	HDGFRP3	ENST00000299633	human	ensembl	69_37n	-1	known	missense	c.362	p.S121I	1.000	NULL	pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	RP11-382A20.3	Clone_based_vega_gene	ENSG00000166503	250	0	0	107	59	35.54	-	-	-	A	83826264	C	A	83826264	3	1	885	1	0	0	0	0	1	0	0	0	7072	797	28	4	261	4	HDGFRP3	15	83826264	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	8161748	83826264	18705128	65	72025										
MRPL28	0	genome.wustl.edu	37	chr16	418609	418609	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cgcttcaggtccatcccaaaCttggagcacaggtcctcctt	8	15	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	16	418609	418609	C	A	SNP	MRPL28	ENST00000199706	human	ensembl	69_37n	-1	known	missense	c.468	p.K156N	1.000	NULL	NULL	-	no_errors	MRPL28	HGNC	ENSG00000086504	186	0	0	156	48	23.53	-	-	-	A	418609	C	A	418609	3	1	885	1	0	0	0	0	1	0	0	0	9864	564	20	4	314	4	MRPL28	16	418609	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		418609	89936144	66	72026										
DECR2	0	genome.wustl.edu	37	chr16	461418	461418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cagcccgctgcagaggctggGgaacaagaccgagatcgccc	14	14	0	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	16	461418	461418	G	A	SNP	DECR2	ENST00000219481	human	ensembl	69_37n	1	known	missense	c.719	p.G240E	1.000	smart_PKS/FAS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DECR2	HGNC	ENSG00000242612	91	0	0	70	18	20.45	-	-	-	A	461418	G	A	461418	3	1	885	1	0	0	0	0	1	0	0	0	4414	1232	43	4	749	4	DECR2	16	461418	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	42809	461418	89893335	67	72027										
PLCG2	0	genome.wustl.edu	37	chr16	81914540	81914540	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cgatgaattcaaaaaggattCgtccgtgttcatcctggggt	11	8	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	16	81914540	81914540	C	A	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	nonsense	c.674	p.S225*	0.988	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	99	0	0	107	24	18.32	-	-	-	A	81914540	C	A	81914540	4	1	885	1	0	0	0	0	0	1	0	0	12110	893	31	3	700	3	PLCG2	16	81914540	Nonsense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	81453122	81914540	8440213	68	72028										
SLC13A5	0	genome.wustl.edu	37	chr17	6594168	6594168	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgcactcagtgaacacggcaAcgagcaaggacaagatcaag	11	10	2	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	6594168	6594168	A	G	SNP	SLC13A5	ENST00000433363	human	ensembl	69_37n	-1	known	missense	c.1367	p.V456A	0.585	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485	103	0	0	48	20	29.41	-	-	-	G	6594168	A	G	6594168	3	3	885	1	0	0	0	0	1	0	0	0	14484	43	2	5	351	5	SLC13A5	17	6594168	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09		6594168	74601042	69	72029										
TP53	0	genome.wustl.edu	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	75	0	0	26	23	46.94	-	-	-	C	7578271	T	C	7578271	3	2	885	1	0	0	0	0	1	0	0	0	16477	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	984103	7578271	73616939	70	72030										
MYO15A	0	genome.wustl.edu	37	chr17	18023342	18023342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	aggagtcggcttcggcctttGtgtacccctgggtaccaccg	13	13	0	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	18023342	18023342	G	C	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.1228	p.V410L	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	111	0	0	74	21	22.11	-	-	-	C	18023342	G	C	18023342	3	2	885	1	0	0	0	0	1	0	0	0	10135	1377	48	4	1230	4	MYO15A	17	18023342	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	10445071	18023342	63171868	71	72031										
TMEM132E	0	genome.wustl.edu	37	chr17	32953382	32953382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ggcccttcagcaccagccagGtggtggcgcgggagctcctg	16	14	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	32953382	32953382	G	T	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	1	known	missense	c.304	p.V102L	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	210	0	0	132	42	24.14	-	-	-	T	32953382	G	T	32953382	3	4	885	1	0	0	0	0	1	0	0	0	16143	1261	44	4	310	4	TMEM132E	17	32953382	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	14930040	32953382	48241828	72	72032										
MYCBPAP	0	genome.wustl.edu	37	chr17	48603371	48603371	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gccccatagccacagagaagGcctctgtgaatgctgagctg	12	12	1	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	48603371	48603371	G	C	SNP	MYCBPAP	ENST00000323776	human	ensembl	69_37n	1	known	missense	c.2041	p.A681P	0.000	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	74	0	0	55	11	16.67	-	-	-	C	48603371	G	C	48603371	3	2	885	1	0	0	0	0	1	0	0	0	10091	1203	42	4	2095	4	MYCBPAP	17	48603371	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	15649989	48603371	32591839	73	72033										
MED13	0	genome.wustl.edu	37	chr17	60072577	60072577	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttttatcaggaaaaaggaatTcctcatctccttcaacaaat	4	9	4	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	60072577	60072577	T	G	SNP	MED13	ENST00000397786	human	ensembl	69_37n	-1	known	missense	c.2117	p.E706A	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	58	0	0	54	10	15.62	-	-	-	G	60072577	T	G	60072577	3	3	885	1	0	0	0	0	1	0	0	0	9501	1783	62	5	4491	5	MED13	17	60072577	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	11469206	60072577	21122633	74	72034										
RNF213	0	genome.wustl.edu	37	chr17	78311419	78311419	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ggaacttggaatggctgaagActgtgaatgagagtcatggg	16	4	1	4			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	17	78311419	78311419	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	missense	c.4561	p.T1521A	0.997	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	42	0	0	30	10	25	-	-	-	G	78311419	A	G	78311419	3	3	885	1	0	0	0	0	1	0	0	0	13563	275	10	5	4970	5	RNF213	17	78311419	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	18238842	78311419	2883791	75	72035										
GTF2F1	0	genome.wustl.edu	37	chr19	6380394	6380394	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttcactgtctgctcgctgctCagccctgtcttcttggtctg	9	14	6	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	6380394	6380394	C	G	SNP	GTF2F1	ENST00000394456	human	ensembl	69_37n	-1	known	silent	c.1452	p.L484	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651	226	0	0	108	58	34.94	-	-	-	G	6380394	C	G	6380394	2	3	885	1	0	0	0	0	0	0	0	1	6909	813	29	2		2	GTF2F1	19	6380394	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		6380394	52748589	76	72036										
SSBP4	0	genome.wustl.edu	37	chr19	18538177	18538177	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	acaggttggcgctgtacgttTatgagtacctgctgcacatc	11	10	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	18538177	18538177	T	G	SNP	SSBP4	ENST00000270061	human	ensembl	69_37n	1	known	missense	c.76	p.Y26D	0.733	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP4	HGNC	ENSG00000130511	87	0	0	65	23	26.14	-	-	-	G	18538177	T	G	18538177	3	3	885	1	0	0	0	0	1	0	0	0	15273	1754	61	5	82	5	SSBP4	19	18538177	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	12157783	18538177	40590806	77	72037										
ZNF208	0	genome.wustl.edu	37	chr19	22155501	22155501	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	agctttgccacattcttcacAtttgtagggtttctctacag	7	10	3	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	22155501	22155501	A	C	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2335	p.C779G	0.770	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	26	0	0	29	9	23.68	-	-	-	C	22155501	A	C	22155501	3	2	885	1	0	0	0	0	1	0	0	0	17862	217	8	5	1511	5	ZNF208	19	22155501	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	3617324	22155501	36973482	78	72038										
ZNF536	0	genome.wustl.edu	37	chr19	30934788	30934788	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tggacttgcagcagttcctcAacgggcagaacctgggcatc	12	12	1	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	30934788	30934788	A	C	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.319	p.N107H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	102	0	0	72	26	26.53	-	-	-	C	30934788	A	C	30934788	3	2	885	1	0	0	0	0	1	0	0	0	18070	130	5	5	321	5	ZNF536	19	30934788	Missense_Mutation	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	8779287	30934788	28194195	79	72039										
MARK4	0	genome.wustl.edu	37	chr19	45801476	45801476	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tctctgccccagggatccaaGatcagtaagtcccgtccatg	9	14	2	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	45801476	45801476	G	T	SNP	MARK4	ENST00000300843	human	ensembl	69_37n	1	known	missense	c.1953	p.K651N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK4	HGNC	ENSG00000007047	93	0	0	67	25	27.17	-	-	-	T	45801476	G	T	45801476	3	4	885	1	0	0	0	0	1	0	0	0	9386	933	33	2	2015	2	MARK4	19	45801476	Missense_Mutation	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09	14866688	45801476	13327507	80	72040										
LENG1	0	genome.wustl.edu	37	chr19	54663414	54663414	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgttccggacgtgccagctcTtcttgggcaagatattcatg	11	10	3	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	19	54663414	54663414	T	G	SNP	LENG1	ENST00000222224	human	ensembl	69_37n	-1	known	missense	c.20	p.K7T	1.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617	75	0	0	70	24	25.53	-	-	-	G	54663414	T	G	54663414	3	3	885	1	0	0	0	0	1	0	0	0	8777	1609	56	5	790	5	LENG1	19	54663414	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	8861938	54663414	4465569	81	72041										
RRBP1	0	genome.wustl.edu	37	chr20	17639638	17639638	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cctttttggccctggttctgGgctccctcggcctttttgcc	10	15	1	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	20	17639638	17639638	G	T	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	silent	c.1515	p.A505	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	314	0	0	279	75	21.19	-	-	-	T	17639638	G	T	17639638	2	4	885	1	0	0	0	0	0	0	0	1	13764	1247	43	4		4	RRBP1	20	17639638	Silent	SNP	G	TCGA-E9-A5FL-01A-11D-A27P-09		17639638	45385882	82	72042										
ERGIC3	0	genome.wustl.edu	37	chr20	34144963	34144963	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gcccaccctctccttctaccAggtccttcacccacttcctg	4	21	3	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	20	34144963	34144963	A	T	SNP	ERGIC3	ENST00000447986	human	ensembl	69_37n	1	known	splice_site	c.1062-2	e13-2	1.000	-	-	-	no_errors	ERGIC3	HGNC	ENSG00000125991	76	0	0	53	30	35.71	-	-	-	T	34144963	A	T	34144963	5	4	885	1	0	0	0	0	0	0	1	0	5262	202	7	5	1080	5	ERGIC3	20	34144963	Splice_Site	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	16505325	34144963	28880557	83	72043										
CHD6	0	genome.wustl.edu	37	chr20	40049229	40049229	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	tgatttgagctcacttccttCaagaggatatgtggggaaaa	11	6	2	3			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	20	40049229	40049229	C	T	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.6046	p.E2016K	0.820	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	69	0	0	21	9	30	-	-	-	T	40049229	C	T	40049229	3	4	885	1	0	0	0	0	1	0	0	0	3358	835	29	2	2129	2	CHD6	20	40049229	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	5904266	40049229	22976291	84	72044										
OPRL1	0	genome.wustl.edu	37	chr20	62729633	62729633	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gtttctctccctgcagagatCgagtgcctggtggagatccc	12	12	1	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	20	62729633	62729633	C	T	SNP	OPRL1	ENST00000336866	human	ensembl	69_37n	1	known	silent	c.594	p.I198	0.960	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_X_opioid_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_X_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OPRL1	HGNC	ENSG00000125510	129	1	0.77	126	27	17.65	-	-	-	T	62729633	C	T	62729633	2	4	885	1	0	0	0	0	0	0	0	1	10959	874	31	1		1	OPRL1	20	62729633	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	22680404	62729633	295887	85	72045										
DGCR14	0	genome.wustl.edu	37	chr22	19121835	19121835	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ggtgtgcttgtgggggtctgCagcccactggccggggtctt	18	10	2	0			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	22	19121835	19121835	C	A	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	silent	c.1305	p.L435	0.527	NULL	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	183	0	0	149	19	11.31	-	-	-	A	19121835	C	A	19121835	2	1	885	1	0	0	0	0	0	0	0	1	4496	697	25	4		4	DGCR14	22	19121835	Silent	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		19121835	32182731	86	72046										
PPIL2	0	genome.wustl.edu	37	chr22	22024612	22024612	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	caaaactatcaagactacaaTaacaagagcactgtcataat	4	9	2	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	22	22024612	22024612	T	G	SNP	PPIL2	ENST00000417788	human	ensembl	69_37n	1	known	missense	c.107	p.I36R	0.009	NULL	NULL	-	no_errors	PPIL2	HGNC	ENSG00000100023	46	0	0	49	19	27.94	-	-	-	G	22024612	T	G	22024612	3	3	885	1	0	0	0	0	1	0	0	0	12404	1421	49	5		5	PPIL2	22	22024612	Missense_Mutation	SNP	T	TCGA-E9-A5FL-01A-11D-A27P-09	2902777	22024612	29279954	87	72047										
IL1RAPL1	0	genome.wustl.edu	37	chrX	29414526	29414526	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	gtgacatagaggattttctaCtgccaaccagagaacctgaa	9	9	1	4			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	X	29414526	29414526	C	G	SNP	IL1RAPL1	ENST00000302196	human	ensembl	69_37n	1	known	missense	c.514	p.L172V	0.402	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom,pfscan_Ig-like	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306	57	0	0	30	7	18.92	-	-	-	G	29414526	C	G	29414526	3	3	885	1	0	0	0	0	1	0	0	0	7715	564	20	4	524	4	IL1RAPL1	23	29414526	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09		29414526	125856034	88	72048										
RPS6KA6	0	genome.wustl.edu	37	chrX	83352800	83352800	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ccagccaacattgtgtaaaaAaggactcctaaactccagat	6	11	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	X	83352800	83352800	A	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	silent	c.1833	p.L611	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	122	0	0	87	22	20.18	-	-	-	T	83352800	A	T	83352800	2	4	885	1	0	0	0	0	0	0	0	1	13741	1	1	5		5	RPS6KA6	23	83352800	Silent	SNP	A	TCGA-E9-A5FL-01A-11D-A27P-09	53938274	83352800	71917760	89	72049										
PCDH19	0	genome.wustl.edu	37	chrX	99551591	99551591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	cgctgttgaccttggggctgCagatggtcacatcgacagtc	13	11	1	2			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	X	99551591	99551591	C	G	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.3131	p.C1044S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	94	0	0	38	8	17.39	-	-	-	G	99551591	C	G	99551591	3	3	885	1	0	0	0	0	1	0	0	0	11587	710	25	4	319	4	PCDH19	23	99551591	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	16198791	99551591	55718969	90	72050										
TSPAN6	0	genome.wustl.edu	37	chrX	99890580	99890580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	15	0.0141366023763983	2.19300278035218	3.4210843373494	1.42545180722892	0.4794877603643	1	8	ttagcatccatgcagaagctCggcaggtagcaaaacaacca	9	11	0	1			TCGA-E9-A5FL-01A-11D-A27P-09	TCGA-E9-A5FL-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	20b0e3b8-7fc9-414a-848a-602614fa2727	8a6dbb92-338b-4fa8-bb83-803f333ea743	X	99890580	99890580	C	T	SNP	TSPAN6	ENST00000373020	human	ensembl	69_37n	-1	known	missense	c.251	p.R84Q	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN6	HGNC	ENSG00000000003	53	0	0	32	12	27.27	-	-	-	T	99890580	C	T	99890580	3	4	885	1	0	0	0	0	1	0	0	0	16747	884	31	1	510	1	TSPAN6	23	99890580	Missense_Mutation	SNP	C	TCGA-E9-A5FL-01A-11D-A27P-09	338989	99890580	55379980	91	72051										
PTP4A2	0	genome.wustl.edu	37	chr1	32384789	32384792	+	RNA	DEL	ATCA	ATCA	-													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	agaccactaaaatgcctattAtcaatcagtgttttctctat							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	ATCA	ATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	32384789	32384792	ATCA	-	DEL	PTP4A2	ENST00000526960	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.940:0.897:0.372:0.298	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007	13	0	0	7	7	50	-	-	-	-	32384792	ATCA	-	32384789	6	5	886	0	1	1	0	1	0	0	0	0	12852	464	16	0		0	PTP4A2	1	32384789	RNA	DEL	ATCA	TCGA-E9-A5UO-01A-11D-A28B-09		32384789	216865832	1	72052										
HRNR	0	genome.wustl.edu	37	chr1	152186614	152186614	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gctccatgttggccacagctCgatgactgtcctgatgtaga	11	11	0	3			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	152186614	152186614	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.7491	p.S2497	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	37	0	0	32	5	13.51	-	-	-	G	152186614	C	G	152186614	2	3	886	1	0	0	0	0	0	0	0	1	7410	871	31	3		3	HRNR	1	152186614	Silent	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	119801825	152186614	97064007	2	72053										
AHCTF1	0	genome.wustl.edu	37	chr1	247027259	247027259	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggagtttcaagcaaatgtaaTtctgaagccctggagatggc	12	7	2	2			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	1	247027259	247027259	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.3534	p.E1178	0.981	NULL	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	53	0	0	17	14	45.16	-	-	-	C	247027259	T	C	247027259	2	2	886	1	0	0	0	0	0	0	0	1	408	1490	52	5		5	AHCTF1	1	247027259	Silent	SNP	T	TCGA-E9-A5UO-01A-11D-A28B-09	94840645	247027259	2223362	3	72054										
FAM123C	0	genome.wustl.edu	37	chr2	131521307	131521308	+	Frame_Shift_Ins	INS	-	-	G													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	agggcctggcctcagatgcaINSgggggggcgacagtttgctc							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	2	131521307	131521308	-	G	INS	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	frame_shift_ins	c.1662_1663	p.A556fs	0.000:0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	14	0	0	10	4	28.57	-	-	-	G	131521308	-	G	131521307	7	5	886	1	0	1	1	0	0	0	0	0	5464	175	7	0	1664	0	FAM123C	2	131521307	Frame_Shift_Ins	INS	-	TCGA-E9-A5UO-01A-11D-A28B-09		131521307	111678066	4	72055										
ZNF385D	0	genome.wustl.edu	37	chr3	21478513	21478513	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gttgacagcaaccttgcataGcgaacagtaaagaagccgtt	10	9	0	2			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	3	21478513	21478513	G	A	SNP	ZNF385D	ENST00000281523	human	ensembl	69_37n	-1	known	silent	c.622	p.L208	0.954	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789	181	0	0	69	62	47.33	-	-	-	A	21478513	G	A	21478513	2	1	886	1	0	0	0	0	0	0	0	1	17974	962	34	4		4	ZNF385D	3	21478513	Silent	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		21478513	176543917	5	72056										
PRICKLE2	0	genome.wustl.edu	37	chr3	64084954	64084954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggaacaccaatcatactcggCgaagtagggtccccagcggt	12	12	1	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	3	64084954	64084954	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	missense	c.2308	p.A770T	0.186	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	30	0	0	20	13	39.39	-	-	-	T	64084954	C	T	64084954	3	4	886	1	0	0	0	0	1	0	0	0	12568	768	27	1	230	1	PRICKLE2	3	64084954	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	42606441	64084954	133937476	6	72057										
HTRA3	0	genome.wustl.edu	37	chr4	8305971	8305971	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gaggtcagcagtggaatttaTgtgcaagaggttgcgccgaa	15	6	1	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	8305971	8305971	T	A	SNP	HTRA3	ENST00000307358	human	ensembl	69_37n	1	known	nonsense	c.1161	p.Y387*	0.454	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1_S6,pfam_Kazal-type_dom,pfam_PDZ,pfam_Prot_inh_Kazal,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,prints_Peptidase_S1C,pfscan_PDZ	-	no_errors	HTRA3	HGNC	ENSG00000170801	99	0	0	28	22	44	-	-	-	A	8305971	T	A	8305971	4	1	886	1	0	0	0	0	0	1	0	0	7509	1471	51	5	1191	5	HTRA3	4	8305971	Nonsense_Mutation	SNP	T	TCGA-E9-A5UO-01A-11D-A28B-09		8305971	182848305	7	72058										
ZNF518B	0	genome.wustl.edu	37	chr4	10445820	10445820	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ccaagaccagtgagtgacacGttgatttcttgaataccttc	8	10	1	5			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	4	10445820	10445820	G	A	SNP	ZNF518B	ENST00000326756	human	ensembl	69_37n	-1	known	silent	c.2133	p.N711	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163	35	0	0	12	14	53.85	-	-	-	A	10445820	G	A	10445820	2	1	886	1	0	0	0	0	0	0	0	1	18059	1136	40	1		1	ZNF518B	4	10445820	Silent	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09	2139849	10445820	180708456	8	72059										
GFPT2	0	genome.wustl.edu	37	chr5	179740926	179740927	+	Frame_Shift_Ins	INS	-	-	A													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gtgagagcgccgcggtccttINSacagtagcgcagcgccagga							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	5	179740926	179740927	-	A	INS	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1312_1311	p.K437fs	1.000:0.889	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	51	0	0	20	10	33.33	-	-	-	A	179740927	-	A	179740926	7	5	886	1	0	1	1	0	0	0	0	0	6398	1763	61	0	760	0	GFPT2	5	179740926	Frame_Shift_Ins	INS	-	TCGA-E9-A5UO-01A-11D-A28B-09		179740926	1174334	9	72060										
DST	0	genome.wustl.edu	37	chr6	56323823	56323823	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ctatctctttgaggacttgtCcaatttgctggcaggtgatt	10	8	1	2			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56323823	56323823	C	G	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.23233	p.D7745H	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	90	0	0	39	22	36.07	-	-	-	G	56323823	C	G	56323823	3	3	886	1	0	0	0	0	1	0	0	0	4818	855	30	2	23	2	DST	6	56323823	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09		56323823	114791244	10	72061			1	117		3	3	205	C		2.497344e-08
DST	0	genome.wustl.edu	37	chr6	56323940	56323940	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ctgggggacagtttccacatCtgagcacacggactggattt	12	10	1	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56323940	56323940	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.23116	p.D7706N	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	39	0	0	23	20	46.51	-	-	-	T	56323940	C	T	56323940	3	4	886	1	0	0	0	0	1	0	0	0	4818	913	32	2	140	2	DST	6	56323940	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	117	56323940	114791127	11	72062			1	117		3	3	205	C		2.497344e-08
DST	0	genome.wustl.edu	37	chr6	56324027	56324027	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	cctgctgccagctttgcttcCagctcgacttcctggtcggc	10	16	0	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	6	56324027	56324027	C	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	nonsense	c.23029	p.G7677*	1.000	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	40	0	0	9	8	47.06	-	-	-	A	56324027	C	A	56324027	4	1	886	1	0	0	0	0	0	1	0	0	4818	603	21	4	227	4	DST	6	56324027	Nonsense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	87	56324027	114791040	12	72063			1	117		3	3	205	C		2.497344e-08
KIAA0895	0	genome.wustl.edu	37	chr7	36423487	36423487	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	cctgaggtagagaacttgagTttagctcttcttgccactgc	10	10	2	3			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	7	36423487	36423487	T	A	SNP	KIAA0895	ENST00000297063	human	ensembl	69_37n	-1	known	missense	c.159	p.K53N	0.338	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	51	0	0	16	3	15.79	-	-	-	A	36423487	T	A	36423487	3	1	886	1	0	0	0	0	1	0	0	0	8249	1722	60	5	1456	5	KIAA0895	7	36423487	Missense_Mutation	SNP	T	TCGA-E9-A5UO-01A-11D-A28B-09		36423487	122715176	13	72064										
MLL5	0	genome.wustl.edu	37	chr7	104703871	104703871	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	atcagtccttattagcaaaaAtgaagtaggcatatttacca	6	7	1	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	7	104703871	104703871	A	G	SNP	MLL5	ENST00000257745	human	ensembl	69_37n	1	known	missense	c.260	p.N87S	1.000	superfamily_Znf_FYVE_PHD	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	MLL5	HGNC	ENSG00000005483	46	0	0	25	14	35	-	-	-	G	104703871	A	G	104703871	3	3	886	1	0	0	0	0	1	0	0	0	9695	101	4	5	270	5	MLL5	7	104703871	Missense_Mutation	SNP	A	TCGA-E9-A5UO-01A-11D-A28B-09	68280384	104703871	54434792	14	72065										
RALYL	0	genome.wustl.edu	37	chr8	85785620	85785620	+	Frame_Shift_Del	DEL	A	A	-													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	agaagattgagaaacagcagAaggcggaggcaggtaagtga							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	85785620	85785620	A	-	DEL	RALYL	ENST00000521268	human	ensembl	69_37n	1	known	frame_shift_del	c.673	p.K225fs	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672	28	0	0	9	2	18.18	-	-	-	-	85785620	A	-	85785620	7	5	886	1	0	1	0	1	0	0	0	0	13103	247	9	0	738	0	RALYL	8	85785620	Frame_Shift_Del	DEL	A	TCGA-E9-A5UO-01A-11D-A28B-09		85785620	60578402	15	72066										
JRK	0	genome.wustl.edu	37	chr8	143745924	143745924	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gctccggaacacggcacgcaGcgcccgcagctgccccactt	11	19	0	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	143745924	143745924	G	A	SNP	JRK	ENST00000422119	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	35	0	0	11	6	35.29	-	-	-	A	143745924	G	A	143745924	1	1	886	0	1	0	0	0	0	0	0	0	8018	958	34	4		4	JRK	8	143745924	RNA	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09	57960304	143745924	2618098	16	72067										
ZNF707	0	genome.wustl.edu	37	chr8	144773090	144773090	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggcccatctccagacacagcCactcggggctctgggcttca	11	16	3	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	8	144773090	144773090	C	T	SNP	ZNF707	ENST00000530341	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF707	HGNC	ENSG00000181135	15	0	0	8	11	57.89	-	-	-	T	144773090	C	T	144773090	1	4	886	0	1	0	0	0	0	0	0	0	18207	609	21	4		4	ZNF707	8	144773090	RNA	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	1027166	144773090	1590932	17	72068										
COL27A1	0	genome.wustl.edu	37	chr9	116930643	116930643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	acctcgccctgctaggcctgGagaacttgaccactgccaca	9	16	0	2			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	9	116930643	116930643	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.808	p.E270K	0.679	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	45	0	0	20	3	13.04	-	-	-	A	116930643	G	A	116930643	3	1	886	1	0	0	0	0	1	0	0	0	3715	1175	41	2	818	2	COL27A1	9	116930643	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		116930643	24282788	18	72069										
NOTCH1	0	genome.wustl.edu	37	chr9	139400222	139400222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ttcggggcccgtgaaggggcCcaggcacaggcaggtggggc	20	11	0	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	9	139400222	139400222	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.4126	p.G1376S	0.674	pirsf_Notch,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	39	0	0	25	22	46.81	-	-	-	T	139400222	C	T	139400222	3	4	886	1	0	0	0	0	1	0	0	0	10619	623	22	4	3581	4	NOTCH1	9	139400222	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	22469579	139400222	1813209	19	72070										
GATA3	0	genome.wustl.edu	37	chr10	8115861	8115862	+	Frame_Shift_Ins	INS	-	-	T													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ctccagacacatgtcctcccINStgagccacatctcgcccttc							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	10	8115861	8115862	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1210_1211	p.S405fs	0.998:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	52	0	0	10	4	28.57	-	-	-	T	8115862	-	T	8115861	7	5	886	1	0	1	1	0	0	0	0	0	6305	680	24	0	1228	0	GATA3	10	8115861	Frame_Shift_Ins	INS	-	TCGA-E9-A5UO-01A-11D-A28B-09		8115861	127418886	20	72071										
MUC5B	0	genome.wustl.edu	37	chr11	1263006	1263006	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gccctgttctcaacgccgcaGcctacgagtagcccggggct	12	16	1	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	11	1263006	1263006	G	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.4905	p.Q1635H	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	23	0	0	2	7	77.78	-	-	-	C	1263006	G	C	1263006	3	2	886	1	0	0	0	0	1	0	0	0	10051	962	34	4	5027	4	MUC5B	11	1263006	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		1263006	133743510	21	72072										
KDM2A	0	genome.wustl.edu	37	chr11	67012699	67012699	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	caaaggtgcgggttcctaccAtccccattacgaagcctcac	8	15	1	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	11	67012699	67012699	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.1603	p.I535V	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	70	0	0	19	19	50	-	-	-	G	67012699	A	G	67012699	3	3	886	1	0	0	0	0	1	0	0	0	8178	217	8	5	1653	5	KDM2A	11	67012699	Missense_Mutation	SNP	A	TCGA-E9-A5UO-01A-11D-A28B-09	65749693	67012699	67993817	22	72073										
SLCO1B3	0	genome.wustl.edu	37	chr12	21220258	21220258	+	Frame_Shift_Del	DEL	T	T	-													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ttaatcatattacaggattgTtcaacctgaattgaaagcac							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	21220258	21220258	T	-	DEL	SLCO1B3	ENST00000553473	human	ensembl	69_37n	1	known	frame_shift_del	c.1871	p.Q625fs	0.184	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	51	0	0	16	2	11.11	-	-	-	-	21220258	T	-	21220258	7	5	886	1	0	1	0	1	0	0	0	0	14813	1725	60	0		0	SLCO1B3	12	21220258	Frame_Shift_Del	DEL	T	TCGA-E9-A5UO-01A-11D-A28B-09		21220258	112631637	23	72074										
KRT86	0	genome.wustl.edu	37	chr12	52695896	52695896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	gcggacgcagcttcggctacCgctccgggggcgtgtgcggg	19	13	0	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	12	52695896	52695896	C	T	SNP	KRT86	ENST00000293525	human	ensembl	69_37n	1	known	missense	c.196	p.R66C	1.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	AC021066.1	Clone_based_ensembl_gene	ENSG00000170442	14	0	0	7	5	41.67	-	-	-	T	52695896	C	T	52695896	3	4	886	1	0	0	0	0	1	0	0	0	8553	652	23	1	198	1	KRT86	12	52695896	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	31475638	52695896	81155999	24	72075										
C14orf102	0	genome.wustl.edu	37	chr14	90764685	90764685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggctcccttctccccagcccGgggctctccactgtcccaaa	8	20	2	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	14	90764685	90764685	G	A	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.1585	p.R529W	1.000	pfam_NRDE-2	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	42	0	0	9	8	47.06	-	-	-	A	90764685	G	A	90764685	3	1	886	1	0	0	0	0	1	0	0	0	1747	1115	39	1	1937	1	C14orf102	14	90764685	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		90764685	16584855	25	72076										
SLTM	0	genome.wustl.edu	37	chr15	59179738	59179738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ttgaccaacaaagcgatcccGcctattgattagaaacaaag	7	10	0	3			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	15	59179738	59179738	G	A	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.2377	p.R793W	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	65	0	0	43	14	24.56	-	-	-	A	59179738	G	A	59179738	3	1	886	1	0	0	0	0	1	0	0	0	14843	1101	38	1	743	1	SLTM	15	59179738	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		59179738	43351654	26	72077										
KIAA0430	0	genome.wustl.edu	37	chr16	15725261	15725261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	acacaagaaccactgtggctGgagcagtgtgtgtatttgca	12	8	0	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	16	15725261	15725261	G	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.1328	p.P443Q	1.000	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	47	0	0	35	4	10.26	-	-	-	T	15725261	G	T	15725261	3	4	886	1	0	0	0	0	1	0	0	0	8229	1348	47	4	3991	4	KIAA0430	16	15725261	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		15725261	74629492	27	72078										
HDAC5	0	genome.wustl.edu	37	chr17	42161001	42161001	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	tggaggagtgcatctcattcCacacggtgtcactgtccacc	10	13	2	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	17	42161001	42161001	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	69_37n	-1	known	nonsense	c.2378	p.W793*	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	44	0	0	17	17	50	-	-	-	T	42161001	C	T	42161001	4	4	886	1	0	0	0	0	0	1	0	0	7061	595	21	4	1033	4	HDAC5	17	42161001	Nonsense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09		42161001	39034209	28	72079										
SLC16A5	0	genome.wustl.edu	37	chr17	73100170	73100172	+	In_Frame_Del	DEL	AGA	AGA	-													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	tggcagcttctacgccctgcAgaagaaggagcaaggcaagc							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	17	73100170	73100172	AGA	-	DEL	SLC16A5	ENST00000329783	human	ensembl	69_37n	1	known	in_frame_del	c.1259_1261	p.K422in_frame_del	0.922:0.979:0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	45	0	0	12	29	69.05	-	-	-	-	73100172	AGA	-	73100170	7	5	886	1	0	1	0	1	0	0	0	0	14500	188	7	0	1273	0	SLC16A5	17	73100170	In_Frame_Del	DEL	AGA	TCGA-E9-A5UO-01A-11D-A28B-09	30939169	73100170	8095040	29	72080										
FCGBP	0	genome.wustl.edu	37	chr19	40433370	40433370	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggtagagtggccaggatggcCggacctcaaactctaccaca	12	12	2	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	19	40433370	40433370	C	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.899	p.R300L	0.023	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	36	0	0	13	5	27.78	-	-	-	A	40433370	C	A	40433370	3	1	886	1	0	0	0	0	1	0	0	0	5824	652	23	3	15458	3	FCGBP	19	40433370	Missense_Mutation	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09		40433370	18695613	30	72081										
ITCH	0	genome.wustl.edu	37	chr20	33077728	33077728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	aaacaaatcatgtggttttgGcaggtttgtttttaaattta	8	3	1	0			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	20	33077728	33077728	G	T	SNP	ITCH	ENST00000262650	human	ensembl	69_37n	1	known	missense	c.2439	p.W813C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	ITCH	HGNC	ENSG00000078747	57	0	0	19	8	29.63	-	-	-	T	33077728	G	T	33077728	3	4	886	1	0	0	0	0	1	0	0	0	7922	1212	42	4	2394	4	ITCH	20	33077728	Missense_Mutation	SNP	G	TCGA-E9-A5UO-01A-11D-A28B-09		33077728	29947792	31	72082										
NRIP1	0	genome.wustl.edu	37	chr21	16340003	16340004	+	Frame_Shift_Ins	INS	-	-	TT													0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	caccttaaatccttctccacINSttttaaagaatcatgactga							TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	21	16340003	16340004	-	TT	INS	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	frame_shift_ins	c.511_510	p.V170fs	1.000:0.999	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	61	0	0	24	10	29.41	-	-	-	TT	16340004	-	TT	16340003	7	5	886	1	0	1	1	0	0	0	0	0	10725	565	20	0	2969	0	NRIP1	21	16340003	Frame_Shift_Ins	INS	-	TCGA-E9-A5UO-01A-11D-A28B-09		16340003	31789892	32	72083										
PIGA	0	genome.wustl.edu	37	chrX	15342880	15342880	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggcaatgtccctgacttcagTtggaaaatagccttttccaa	8	10	1	1			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	X	15342880	15342880	T	A	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.1095	p.Q365H	0.089	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	47	0	0	11	3	20	-	-	-	A	15342880	T	A	15342880	3	1	886	1	0	0	0	0	1	0	0	0	11958	1722	60	5	367	5	PIGA	23	15342880	Missense_Mutation	SNP	T	TCGA-E9-A5UO-01A-11D-A28B-09		15342880	139927680	33	72084										
WDR13	0	genome.wustl.edu	37	chrX	48458086	48458086	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	1	0.994090990356536	0.647321428571429	0	0.796703296703297	1	1	0	ggcatgtatcatgtttttgaCcagcacgtggatgaggcagg	14	7	1	2			TCGA-E9-A5UO-01A-11D-A28B-09	TCGA-E9-A5UO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dc23e9b3-7347-405e-8a21-72955541757e	ff54d8e4-64f8-48eb-8b2e-314142645eb6	X	48458086	48458086	C	T	SNP	WDR13	ENST00000218056	human	ensembl	69_37n	1	known	silent	c.504	p.D168	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940	32	0	0	3	10	76.92	-	-	-	T	48458086	C	T	48458086	2	4	886	1	0	0	0	0	0	0	0	1	17372	506	18	4		4	WDR13	23	48458086	Silent	SNP	C	TCGA-E9-A5UO-01A-11D-A28B-09	33115206	48458086	106812474	34	72085										
DOCK7	0	genome.wustl.edu	37	chr1	63090858	63090858	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ccatacatgtatagtacaatCactacctttctgaaattaaa	3	9	2	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	1	63090858	63090858	C	T	SNP	DOCK7	ENST00000464312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	34	0	0	16	4	19.05	-	-	-	T	63090858	C	T	63090858	1	4	887	0	1	0	0	0	0	0	0	0	4727	841	29	2		2	DOCK7	1	63090858	RNA	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		63090858	186159763	1	72086										
RYR2	0	genome.wustl.edu	37	chr1	237924277	237924277	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	tccttgacctaaatgcatttGagcgacaaaacaaagctgaa	7	9	0	3			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	1	237924277	237924277	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	nonsense	c.11443	p.E3815*	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	81	0	0	83	20	19.42	-	-	-	T	237924277	G	T	237924277	4	4	887	1	0	0	0	0	0	1	0	0	13855	1291	45	2	11759	2	RYR2	1	237924277	Nonsense_Mutation	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	174833419	237924277	11326344	2	72087										
EPHA4	0	genome.wustl.edu	37	chr2	222284646	222284646	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	tagtcctaagcatgaggctaCgcacatacacacacccgcac	7	15	0	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	2	222284646	222284646	C	T	SNP	EPHA4	ENST00000469354	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	EPHA4	HGNC	ENSG00000116106	35	0	0	14	3	17.65	-	-	-	T	222284646	C	T	222284646	1	4	887	0	1	0	0	0	0	0	0	0	5206	551	19	1		1	EPHA4	2	222284646	RNA	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		222284646	20914727	3	72088										
CADM2	0	genome.wustl.edu	37	chr3	86010721	86010721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	attcttttcctgaacaaaacGgataatggtacatatcgatg	7	7	1	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	3	86010721	86010721	G	A	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	silent	c.873	p.T291	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	93	0	0	38	29	43.28	-	-	-	A	86010721	G	A	86010721	2	1	887	1	0	0	0	0	0	0	0	1	2592	1103	39	1		1	CADM2	3	86010721	Silent	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09		86010721	112011709	4	72089										
TLR10	0	genome.wustl.edu	37	chr4	38775165	38775165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gcttttctcaatgaagcttaCaatattttcactaatgcttt	4	8	2	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	4	38775165	38775165	C	T	SNP	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	missense	c.2047	p.V683I	0.901	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	91	0	0	56	35	38.04	-	-	-	T	38775165	C	T	38775165	3	4	887	1	0	0	0	0	1	0	0	0	16045	478	17	4	392	4	TLR10	4	38775165	Missense_Mutation	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		38775165	152379111	5	72090										
TRIO	0	genome.wustl.edu	37	chr5	14358426	14358426	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ggtgactgtcaacgtgatcaAggaaggggaggacctcatcc	14	9	3	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	5	14358426	14358426	A	G	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.2186	p.K729R	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	100	0	0	48	19	28.36	-	-	-	G	14358426	A	G	14358426	3	3	887	1	0	0	0	0	1	0	0	0	16648	72	3	5	2232	5	TRIO	5	14358426	Missense_Mutation	SNP	A	TCGA-E9-A5UP-01A-11D-A28B-09		14358426	166556834	6	72091										
APC	0	genome.wustl.edu	37	chr5	112175450	112175450	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ccccactcatgtttagcagaTgtacttctgtcagttcactt	6	12	4	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	5	112175450	112175450	T	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.4159	p.C1387S	1.000	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	50	0	0	11	8	42.11	-	-	-	A	112175450	T	A	112175450	3	1	887	1	0	0	0	0	1	0	0	0	764	1464	51	5	4217	5	APC	5	112175450	Missense_Mutation	SNP	T	TCGA-E9-A5UP-01A-11D-A28B-09	97817024	112175450	68739810	7	72092										
PSORS1C1	0	genome.wustl.edu	37	chr6	31083664	31083664	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gtctgcaaccttggggtagtGgagaaagcagaaccactctt	12	9	2	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	6	31083664	31083664	G	A	SNP	PSORS1C1	ENST00000467107	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSORS1C1	HGNC	ENSG00000204540	87	0	0	40	5	11.11	-	-	-	A	31083664	G	A	31083664	1	1	887	0	1	0	0	0	0	0	0	0	12794	1363	47	4		4	PSORS1C1	6	31083664	RNA	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09		31083664	140031403	8	72093										
MCM9	0	genome.wustl.edu	37	chr6	119136278	119136278	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gtgcaggcatgaaccttgccGcttttattactgcctgaaac	9	11	0	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	6	119136278	119136278	G	A	SNP	MCM9	ENST00000316316	human	ensembl	69_37n	-1	known	silent	c.3141	p.S1047	0.002	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	64	0	0	36	10	21.74	-	-	-	A	119136278	G	A	119136278	2	1	887	1	0	0	0	0	0	0	0	1	9465	1102	38	1		1	MCM9	6	119136278	Silent	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	88052614	119136278	51978789	9	72094										
STAG3L4	0	genome.wustl.edu	37	chr7	66767682	66767682	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	cccccagtcgtagcctcggaCggtttctgagcgttggtgtt	13	12	1	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	7	66767682	66767682	C	G	SNP	STAG3L4	ENST00000416602	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	STAG3L4	HGNC	ENSG00000106610	119	0	0	27	28	50.91	-	-	-	G	66767682	C	G	66767682	1	3	887	0	1	0	0	0	0	0	0	0	15338	551	19	3		3	STAG3L4	7	66767682	RNA	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		66767682	92370981	10	72095										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138764884	138764884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	taggtgtgcaggacctctcaGcagacgctgaagcagacgca	13	11	1	3			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	7	138764884	138764884	G	A	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.803	p.A268V	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	57	0	0	18	5	21.74	-	-	-	A	138764884	G	A	138764884	3	1	887	1	0	0	0	0	1	0	0	0	17671	971	34	4	1949	4	ZC3HAV1	7	138764884	Missense_Mutation	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	71997202	138764884	20373779	11	72096										
SSPO	0	genome.wustl.edu	37	chr7	149482039	149482039	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	tcacctgtgacagccccagcGccaatcactcctgccctgca	7	19	2	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	7	149482039	149482039	G	A	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	66	0	0	23	7	23.33	-	-	-	A	149482039	G	A	149482039	1	1	887	0	1	0	0	0	0	0	0	0	15280	1074	38	1		1	SSPO	7	149482039	RNA	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	10717155	149482039	9656624	12	72097										
ABP1	0	genome.wustl.edu	37	chr7	150557703	150557703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gagcagtttcttcacaacaaCgagaacattgaaaatgaggt	9	7	2	3			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	7	150557703	150557703	C	T	SNP	ABP1	ENST00000416793	human	ensembl	69_37n	1	known	silent	c.2028	p.N676	0.986	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	ABP1	HGNC	ENSG00000002726	85	0	0	40	11	21.57	-	-	-	T	150557703	C	T	150557703	2	4	887	1	0	0	0	0	0	0	0	1	98	535	19	1		1	ABP1	7	150557703	Silent	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09	1075664	150557703	8580960	13	72098										
IL33	0	genome.wustl.edu	37	chr9	6241782	6241782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	aagccttgtgtttcaagctgGgaagtaaggacttaagttat	11	5	1	0			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	9	6241782	6241782	G	C	SNP	IL33	ENST00000381434	human	ensembl	69_37n	1	known	missense	c.88	p.G30R	0.048	NULL	NULL	-	no_errors	IL33	HGNC	ENSG00000137033	38	0	0	16	5	23.81	-	-	-	C	6241782	G	C	6241782	3	2	887	1	0	0	0	0	1	0	0	0	7747	1233	43	4	90	4	IL33	9	6241782	Missense_Mutation	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09		6241782	134971649	14	72099										
HNRNPK	0	genome.wustl.edu	37	chr9	86595498	86595498	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	agaggataatggcgtctgcaGtgctgtcgcctggagcgccc	15	11	1	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	9	86595498	86595498	G	A	SNP	HNRNPK	ENST00000472778	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	HNRNPK	HGNC	ENSG00000165119	52	0	0	19	4	17.39	-	-	-	A	86595498	G	A	86595498	1	1	887	0	1	0	0	0	0	0	0	0	7320	1044	36	4		4	HNRNPK	9	86595498	RNA	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	80353716	86595498	54617933	15	72100										
OR52E8	0	genome.wustl.edu	37	chr11	5878438	5878438	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	agcctcagaaggagaaacacCagtggaacaaccatgtacag	10	10	1	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	11	5878438	5878438	C	A	SNP	OR52E8	ENST00000537935	human	ensembl	69_37n	-1	known	silent	c.495	p.L165	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269	54	0	0	19	23	54.76	-	-	-	A	5878438	C	A	5878438	2	1	887	1	0	0	0	0	0	0	0	1	11191	581	21	4		4	OR52E8	11	5878438	Silent	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		5878438	129128078	16	72101										
BIRC3	0	genome.wustl.edu	37	chr11	102195805	102195805	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	cttttctgtcgccaacagatCtggcaaaagcaggcttttac	8	11	2	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	11	102195805	102195805	C	G	SNP	BIRC3	ENST00000263464	human	ensembl	69_37n	1	known	missense	c.565	p.L189V	0.777	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445	35	0	0	21	9	30	-	-	-	G	102195805	C	G	102195805	3	3	887	1	0	0	0	0	1	0	0	0	1441	912	32	2	567	2	BIRC3	11	102195805	Missense_Mutation	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09	96317367	102195805	32810711	17	72102										
GRIA4	0	genome.wustl.edu	37	chr11	105842661	105842661	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	aactcctgtaaaccttgccgTtttgaaactcagtgaggcag	9	10	1	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	11	105842661	105842661	T	A	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.2315	p.V772D	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	56	0	0	20	10	33.33	-	-	-	A	105842661	T	A	105842661	3	1	887	1	0	0	0	0	1	0	0	0	6821	1725	60	5	2525	5	GRIA4	11	105842661	Missense_Mutation	SNP	T	TCGA-E9-A5UP-01A-11D-A28B-09	3646856	105842661	29163855	18	72103										
AMN1	0	genome.wustl.edu	37	chr12	31862323	31862323	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	aaaggcttaatgtctgtgagAtatctggaaatattcttcat	8	5	4	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	12	31862323	31862323	A	T	SNP	AMN1	ENST00000281471	human	ensembl	69_37n	-1	known	nonsense	c.75	p.Y25*	0.761	NULL	smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	AMN1	HGNC	ENSG00000151743	68	0	0	15	10	40	-	-	-	T	31862323	A	T	31862323	4	4	887	1	0	0	0	0	0	1	0	0	581	340	12	5	725	5	AMN1	12	31862323	Nonsense_Mutation	SNP	A	TCGA-E9-A5UP-01A-11D-A28B-09		31862323	101989572	19	72104										
PGF	0	genome.wustl.edu	37	chr14	75409429	75409429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ttacctccggggaacagcatCgccgcacctgccagagacca	10	16	0	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	14	75409429	75409429	C	T	SNP	PGF	ENST00000405431	human	ensembl	69_37n	-1	known	missense	c.646	p.D216N	0.000	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PGF	HGNC	ENSG00000119630	42	0	0	10	9	47.37	-	-	-	T	75409429	C	T	75409429	3	4	887	1	0	0	0	0	1	0	0	0	11862	884	31	1	23	1	PGF	14	75409429	Missense_Mutation	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09		75409429	31940111	20	72105										
TGM5	0	genome.wustl.edu	37	chr15	43525787	43525787	+	Frame_Shift_Del	DEL	T	T	-													0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ttcttgaagaggccacttccTtccacagtcagcacacagtc							TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	15	43525787	43525787	T	-	DEL	TGM5	ENST00000220420	human	ensembl	69_37n	-1	known	frame_shift_del	c.1974	p.G659fs	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	59	0	0	18	2	10	-	-	-	-	43525787	T	-	43525787	7	5	887	1	0	1	0	1	0	0	0	0	15928	1606	56	0	196	0	TGM5	15	43525787	Frame_Shift_Del	DEL	T	TCGA-E9-A5UP-01A-11D-A28B-09		43525787	59005605	21	72106										
SECISBP2L	0	genome.wustl.edu	37	chr15	49292062	49292062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gtagttgaagattcccactaCgctaacaggaaccagcttgt	9	10	0	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	15	49292062	49292062	C	A	SNP	SECISBP2L	ENST00000559471	human	ensembl	69_37n	-1	known	missense	c.2371	p.V791L	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593	100	0	0	48	20	29.41	-	-	-	A	49292062	C	A	49292062	3	1	887	1	0	0	0	0	1	0	0	0	14095	536	19	3	946	3	SECISBP2L	15	49292062	Missense_Mutation	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09	5766275	49292062	53239330	22	72107										
SPSB3	0	genome.wustl.edu	37	chr16	1827832	1827832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gatggagccctggccgaaccGcgatgagaagctggtcttgt	15	10	1	1			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	16	1827832	1827832	G	A	SNP	SPSB3	ENST00000301717	human	ensembl	69_37n	-1	known	missense	c.637	p.R213W	0.239	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB3	HGNC	ENSG00000162032	122	0	0	95	17	15.18	-	-	-	A	1827832	G	A	1827832	3	1	887	1	0	0	0	0	1	0	0	0	15205	1086	38	1	438	1	SPSB3	16	1827832	Missense_Mutation	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09		1827832	88526921	23	72108										
ITGAM	0	genome.wustl.edu	37	chr16	31277441	31277441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gatccaacctacggcagcagCcccagaagttcccagaggcc	10	16	0	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	16	31277441	31277441	C	T	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	1	known	missense	c.400	p.P134S	0.016	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	84	0	0	82	12	12.77	-	-	-	T	31277441	C	T	31277441	3	4	887	1	0	0	0	0	1	0	0	0	7941	739	26	4	418	4	ITGAM	16	31277441	Missense_Mutation	SNP	C	TCGA-E9-A5UP-01A-11D-A28B-09	29449609	31277441	59077312	24	72109										
SLC5A2	0	genome.wustl.edu	37	chr16	31498700	31498700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ccttcgtcattctggggggcGcctgcatcctcatgggttac	12	13	3	0			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	16	31498700	31498700	G	A	SNP	SLC5A2	ENST00000330498	human	ensembl	69_37n	1	known	missense	c.634	p.A212T	0.955	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675	122	0	0	49	54	52.43	-	-	-	A	31498700	G	A	31498700	3	1	887	1	0	0	0	0	1	0	0	0	14754	1087	38	1	656	1	SLC5A2	16	31498700	Missense_Mutation	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	221259	31498700	58856053	25	72110										
CBFB	0	genome.wustl.edu	37	chr16	67070577	67070578	+	Frame_Shift_Ins	INS	-	-	T													0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	gaaccaatctgtctctccagINSttttttccggccagctggca							TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	16	67070577	67070578	-	T	INS	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	frame_shift_ins	c.201_202	p.P69fs	1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	96	0	0	8	21	72.41	-	-	-	T	67070578	-	T	67070577	7	5	887	1	0	1	1	0	0	0	0	0	2724	1020	36	0	211	0	CBFB	16	67070577	Frame_Shift_Ins	INS	-	TCGA-E9-A5UP-01A-11D-A28B-09	35571877	67070577	23284176	26	72111										
FOXF1	0	genome.wustl.edu	37	chr16	86544800	86544800	+	Frame_Shift_Del	DEL	C	C	-													0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	acgtggacggcatggccctgCccagccactcggtgccccac							TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	16	86544800	86544800	C	-	DEL	FOXF1	ENST00000262426	human	ensembl	69_37n	1	known	frame_shift_del	c.625	p.S210fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241	13	0	0	4	2	33.33	-	-	-	-	86544800	C	-	86544800	7	5	887	1	0	1	0	1	0	0	0	0	6053	739	26	0	627	0	FOXF1	16	86544800	Frame_Shift_Del	DEL	C	TCGA-E9-A5UP-01A-11D-A28B-09	19474223	86544800	3809953	27	72112										
CLTC	0	genome.wustl.edu	37	chr17	57762432	57762432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ttaaggctctgcgaacatcaAtagatgcttatgacaacttt	7	8	2	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	17	57762432	57762432	A	G	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	missense	c.4450	p.I1484V	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	56	0	0	53	23	30.26	-	-	-	G	57762432	A	G	57762432	3	3	887	1	0	0	0	0	1	0	0	0	3596	101	4	5	4564	5	CLTC	17	57762432	Missense_Mutation	SNP	A	TCGA-E9-A5UP-01A-11D-A28B-09		57762432	23432778	28	72113										
PRKCA	0	genome.wustl.edu	37	chr17	64800107	64800107	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	tctgattttgaagggttctcGtatgtcaacccccagtttgt	9	9	3	2			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	17	64800107	64800107	G	A	SNP	PRKCA	ENST00000413366	human	ensembl	69_37n	1	known	silent	c.1971	p.S657	0.667	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	66	0	0	69	8	10.39	-	-	-	A	64800107	G	A	64800107	2	1	887	1	0	0	0	0	0	0	0	1	12588	1132	40	1		1	PRKCA	17	64800107	Silent	SNP	G	TCGA-E9-A5UP-01A-11D-A28B-09	7037675	64800107	16395103	29	72114										
CCBE1	0	genome.wustl.edu	37	chr18	57115243	57115243	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	ccctggcccccaggcaggccAggaggtcctggaaggtaggt	16	13	0	0			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	18	57115243	57115243	A	T	SNP	CCBE1	ENST00000398179	human	ensembl	69_37n	-1	known	missense	c.74	p.L25Q	1.000	NULL	pfam_Collagen	-	no_errors	CCBE1	HGNC	ENSG00000183287	84	0	0	39	35	47.3	-	-	-	T	57115243	A	T	57115243	3	4	887	1	0	0	0	0	1	0	0	0	2756	175	7	5	493	5	CCBE1	18	57115243	Missense_Mutation	SNP	A	TCGA-E9-A5UP-01A-11D-A28B-09		57115243	20962005	30	72115										
FASTKD5	0	genome.wustl.edu	37	chr20	3129595	3129595	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.965830697851541	0.79887482419128	2.39662447257384	0.479324894514768	1	1	0	taatgtgttctggagggtccTgtcccccatgctgtgtgctg	13	10	1	0			TCGA-E9-A5UP-01A-11D-A28B-09	TCGA-E9-A5UP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d061284-08ba-40a8-b786-cb5dd38568ae	ea5a960d-e0cb-4371-9ea6-7b93ddfe4275	20	3129595	3129595	T	G	SNP	FASTKD5	ENST00000380266	human	ensembl	69_37n	-1	known	missense	c.122	p.Q41P	0.001	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251	144	0	0	66	87	56.86	-	-	-	G	3129595	T	G	3129595	3	3	887	1	0	0	0	0	1	0	0	0	5734	1580	55	5	2176	5	FASTKD5	20	3129595	Missense_Mutation	SNP	T	TCGA-E9-A5UP-01A-11D-A28B-09		3129595	59895925	31	72116										
ASAP3	0	genome.wustl.edu	37	chr1	23765288	23765288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctcagggtttggcctcacttGgcacgtcagcagggtcagct	13	12	4	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	23765288	23765288	G	T	SNP	ASAP3	ENST00000336689	human	ensembl	69_37n	-1	known	missense	c.1054	p.Q352K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	42	0	0	67	39	36.79	-	-	-	T	23765288	G	T	23765288	3	4	888	1	0	0	0	0	1	0	0	0	1016	1357	47	4	1713	4	ASAP3	1	23765288	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		23765288	225485333	1	72117										
EPS15	0	genome.wustl.edu	37	chr1	51910583	51910583	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tttgtaaactggccctgtctGatggtggaatcatttcagga	11	7	3	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	51910583	51910583	G	C	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	nonsense	c.932	p.S311*	1.000	smart_EPS15_homology,pfscan_EPS15_homology	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	62	0	0	137	16	10.46	-	-	-	C	51910583	G	C	51910583	4	2	888	1	0	0	0	0	0	1	0	0	5229	1294	45	2	1916	2	EPS15	1	51910583	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	28145295	51910583	197340038	2	72118										
SPAG17	0	genome.wustl.edu	37	chr1	118598416	118598416	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	aagtttggcattagcagaagAtttcaattccagctcagctc	8	9	2	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	118598416	118598416	A	T	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.2662	p.S888T	0.001	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	89	0	0	152	74	32.46	-	-	-	T	118598416	A	T	118598416	3	4	888	1	0	0	0	0	1	0	0	0	15070	333	12	5	4129	5	SPAG17	1	118598416	Missense_Mutation	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	66687833	118598416	130652205	3	72119										
SMG5	0	genome.wustl.edu	37	chr1	156238081	156238081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tcctcacaggccccactcacCgctttttgccaggagacagt	8	16	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	156238081	156238081	C	T	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	missense	c.839	p.R280Q	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	94	0	0	253	86	25.37	-	-	-	T	156238081	C	T	156238081	3	4	888	1	0	0	0	0	1	0	0	0	14885	666	23	1	2271	1	SMG5	1	156238081	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	37639665	156238081	93012540	4	72120										
NES	0	genome.wustl.edu	37	chr1	156640448	156640448	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctctgctcccctgggggcctCagcctctgactcctccctac	8	20	3	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	156640448	156640448	C	T	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.3532	p.E1178K	0.000	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	13	0	0	34	7	17.07	-	-	-	T	156640448	C	T	156640448	3	4	888	1	0	0	0	0	1	0	0	0	10409	835	29	2	1337	2	NES	1	156640448	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	402367	156640448	92610173	5	72121										
RYR2	0	genome.wustl.edu	37	chr1	237802483	237802483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	agatggtccctcaccaaataGcggatccagtaaaacactgt	8	11	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	237802483	237802483	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.7091	p.S2364I	0.162	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	34	0	0	129	32	19.88	-	-	-	T	237802483	G	T	237802483	3	4	888	1	0	0	0	0	1	0	0	0	13855	971	34	4	7279	4	RYR2	1	237802483	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	81162035	237802483	11448138	6	72122										
FMN2	0	genome.wustl.edu	37	chr1	240370290	240370290	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gatgtctgtctcgaagctctCaggttagaagaaaaggaagt	12	6	3	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	240370290	240370290	C	G	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.2178	p.L726	0.364	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	41	0	0	43	24	35.82	-	-	-	G	240370290	C	G	240370290	2	3	888	1	0	0	0	0	0	0	0	1	5996	813	29	2		2	FMN2	1	240370290	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	2567807	240370290	8880331	7	72123										
KIF26B	0	genome.wustl.edu	37	chr1	245704136	245704136	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cttccacttcttccgctgccGaaccaccgctctttgcaacc	5	19	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	1	245704136	245704136	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	nonsense	c.1234	p.E412*	0.998	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	32	0	0	76	28	26.92	-	-	-	T	245704136	G	T	245704136	4	4	888	1	0	0	0	0	0	1	0	0	8347	1059	37	3	1252	3	KIF26B	1	245704136	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	5333846	245704136	3546485	8	72124										
GREB1	0	genome.wustl.edu	37	chr2	11727547	11727547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ccaaatggtagcccttggtcCggcagaacctgcatcgcccc	10	16	0	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	11727547	11727547	C	T	SNP	GREB1	ENST00000263834	human	ensembl	69_37n	1	known	missense	c.1199	p.P400L	0.066	NULL	NULL	-	no_errors	GREB1	HGNC	ENSG00000196208	26	0	0	77	31	28.7	-	-	-	T	11727547	C	T	11727547	3	4	888	1	0	0	0	0	1	0	0	0	6811	652	23	1	1233	1	GREB1	2	11727547	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		11727547	231471826	9	72125										
IL1RL2	0	genome.wustl.edu	37	chr2	102835485	102835485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tctacgatgctggagagtcaAtaacactttggtggatgatt	11	6	2	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	102835485	102835485	A	G	SNP	IL1RL2	ENST00000264257	human	ensembl	69_37n	1	known	missense	c.797	p.N266S	0.178	smart_Ig_sub	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II,prints_IL1R_rcpt	-	no_errors	IL1RL2	HGNC	ENSG00000115598	58	0	0	123	43	25.9	-	-	-	G	102835485	A	G	102835485	3	3	888	1	0	0	0	0	1	0	0	0	7718	101	4	5	819	5	IL1RL2	2	102835485	Missense_Mutation	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	91107938	102835485	140363888	10	72126										
RGPD3	0	genome.wustl.edu	37	chr2	107050797	107050797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ttcttcaggagaaagggcatCatttgcaatgtcttctgcct	9	9	5	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	107050797	107050797	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.2092	p.D698N	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	177	0	0	293	103	26.01	-	-	-	T	107050797	C	T	107050797	3	4	888	1	0	0	0	0	1	0	0	0	13370	826	29	2	3220	2	RGPD3	2	107050797	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	4215312	107050797	136148576	11	72127										
ARHGAP15	0	genome.wustl.edu	37	chr2	143973974	143973974	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tggttgaaaaagaaggttatCtgcaaaaagctaaaattgca	9	4	1	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	143973974	143973974	C	G	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	1	known	missense	c.256	p.L86V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	31	0	0	84	40	32.26	-	-	-	G	143973974	C	G	143973974	3	3	888	1	0	0	0	0	1	0	0	0	868	912	32	2	266	2	ARHGAP15	2	143973974	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	36923177	143973974	99225399	12	72128										
TTN	0	genome.wustl.edu	37	chr2	179425385	179425385	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ccatgcaaggtggcttgtttCacgtttttctacgatgtaat	9	8	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	179425385	179425385	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.77770	p.E25924K	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	15	0	0	20	18	47.37	-	-	-	T	179425385	C	T	179425385	3	4	888	1	0	0	0	0	1	0	0	0	16832	835	29	2	22653	2	TTN	2	179425385	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	35451411	179425385	63773988	13	72129										
MDH1B	0	genome.wustl.edu	37	chr2	207610374	207610374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tatggctgaaaatgtatcttGtctccaagtgcaacaagttt	8	7	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	207610374	207610374	G	T	SNP	MDH1B	ENST00000374412	human	ensembl	69_37n	-1	known	missense	c.1380	p.D460E	0.014	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400	48	0	0	102	33	24.44	-	-	-	T	207610374	G	T	207610374	3	4	888	1	0	0	0	0	1	0	0	0	9480	1368	48	4	192	4	MDH1B	2	207610374	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	28184989	207610374	35588999	14	72130										
CPS1	0	genome.wustl.edu	37	chr2	211465381	211465381	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ggaagacaggcagctgttttCagataaactaaatgagatca	10	6	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	211465381	211465381	C	T	SNP	CPS1	ENST00000430249	human	ensembl	69_37n	1	known	missense	c.1670	p.S557L	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE_1,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,smart_MGS-like_dom,prints_CbamoylP_synth_lsu_CPSase_dom,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	37	0	0	58	32	35.56	-	-	-	T	211465381	C	T	211465381	3	4	888	1	0	0	0	0	1	0	0	0	3853	838	29	2	1732	2	CPS1	2	211465381	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	3855007	211465381	31733992	15	72131										
IQCA1	0	genome.wustl.edu	37	chr2	237405937	237405937	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gactttcctgatcagtattcGtttctgggggtggacgaact	12	8	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	2	237405937	237405937	G	A	SNP	IQCA1	ENST00000409907	human	ensembl	69_37n	-1	known	nonsense	c.205	p.R69*	1.000	NULL	pfam_ATPase_AAA_core,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	39	0	0	54	17	23.94	-	-	-	A	237405937	G	A	237405937	4	1	888	1	0	0	0	0	0	1	0	0	7856	1153	40	1	2335	1	IQCA1	2	237405937	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	25940556	237405937	5793436	16	72132										
IRAK2	0	genome.wustl.edu	37	chr3	10254979	10254979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tgaggcagacgtggtccaggCaaccgatgacttcaatcaaa	11	10	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	10254979	10254979	C	T	SNP	IRAK2	ENST00000256458	human	ensembl	69_37n	1	known	missense	c.617	p.A206V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	44	0	0	59	27	31.03	-	-	-	T	10254979	C	T	10254979	3	4	888	1	0	0	0	0	1	0	0	0	7877	710	25	4	635	4	IRAK2	3	10254979	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		10254979	187767451	17	72133										
C3orf26	0	genome.wustl.edu	37	chr3	99886581	99886581	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gttttctgttcttttttccaGtttgtcctaagtgggtaaaa	8	6	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	99886581	99886581	G	A	SNP	C3orf26	ENST00000421999	human	ensembl	69_37n	1	known	splice_site	c.416-1	e6-1	1.000	-	-	-	no_errors	C3orf26	HGNC	ENSG00000184220	86	0	0	165	68	29.18	-	-	-	A	99886581	G	A	99886581	5	1	888	1	0	0	0	0	0	0	1	0	2238	1043	36	4	451	4	C3orf26	3	99886581	Splice_Site	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	89631602	99886581	98135849	18	72134										
KIAA2018	0	genome.wustl.edu	37	chr3	113374108	113374108	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	acttccactgtttaccttctCtgtgctaggatttgagaaca	7	10	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	113374108	113374108	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.6421	p.E2141K	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	69	0	0	126	45	26.32	-	-	-	T	113374108	C	T	113374108	3	4	888	1	0	0	0	0	1	0	0	0	8320	922	32	2	320	2	KIAA2018	3	113374108	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	13487527	113374108	84648322	19	72135										
CASR	0	genome.wustl.edu	37	chr3	122003458	122003458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cgctttcaaggtggctgcccGggccacgctgcgccgcagca	14	16	1	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	122003458	122003458	G	A	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.2687	p.R896Q	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	18	0	0	28	9	24.32	-	-	-	A	122003458	G	A	122003458	3	1	888	1	0	0	0	0	1	0	0	0	2707	1116	39	1	2709	1	CASR	3	122003458	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	8629350	122003458	76018972	20	72136										
KALRN	0	genome.wustl.edu	37	chr3	124415017	124415017	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	accctgaagatctgtaatctGatgccccaagacagtgggat	10	10	2	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	124415017	124415017	G	C	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	1	novel	nonstop	c.7520	p.*2507S	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	41	0	0	93	15	13.89	-	-	-	C	124415017	G	C	124415017	4	2	888	1	0	0	0	0	0	0	0	0	8029	1277	45	2	7984	2	KALRN	3	124415017	Nonstop_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	2411559	124415017	73607413	21	72137										
GYG1	0	genome.wustl.edu	37	chr3	148714088	148714088	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ttctggattttattttgacaGaaaagttttagagacagtct	8	4	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	148714088	148714088	G	C	SNP	GYG1	ENST00000345003	human	ensembl	69_37n	1	known	splice_site	c.144-1	e3-1	1.000	-	-	-	no_errors	GYG1	HGNC	ENSG00000163754	35	0	0	60	20	25	-	-	-	C	148714088	G	C	148714088	5	2	888	1	0	0	0	0	0	0	1	0	6956	956	33	2	153	2	GYG1	3	148714088	Splice_Site	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	24299071	148714088	49308342	22	72138										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0	92	26	22.03	-	-	-	G	178936095	A	G	178936095	3	3	888	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	30222007	178936095	19086335	23	72139										
FXR1	0	genome.wustl.edu	37	chr3	180685879	180685879	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	aacccctctgaaacggaatcTgagcgtaaagacgagctgag	11	10	2	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	3	180685879	180685879	T	G	SNP	FXR1	ENST00000482125	human	ensembl	69_37n	1	novel	missense	c.41	p.L14R	0.935	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FXR1	HGNC	ENSG00000114416	50	0	0	112	42	27.27	-	-	-	G	180685879	T	G	180685879	3	3	888	1	0	0	0	0	1	0	0	0	6164	1567	55	5	1293	5	FXR1	3	180685879	Missense_Mutation	SNP	T	TCGA-EW-A1IW-01A-11D-A13L-09	1749784	180685879	17336551	24	72140										
TBCK	0	genome.wustl.edu	37	chr4	107170104	107170104	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	aatgtccaaacaaccatgctCttcagccagaactattaaag	5	11	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	4	107170104	107170104	C	G	SNP	TBCK	ENST00000273980	human	ensembl	69_37n	-1	known	missense	c.694	p.E232Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_cat_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348	30	0	0	62	17	21.52	-	-	-	G	107170104	C	G	107170104	3	3	888	1	0	0	0	0	1	0	0	0	15731	922	32	2	2063	2	TBCK	4	107170104	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		107170104	83984172	25	72141										
NLN	0	genome.wustl.edu	37	chr5	65084087	65084087	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctatattactacatgactcaGacagaggaactcaagtattc	6	9	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	5	65084087	65084087	G	C	SNP	NLN	ENST00000380985	human	ensembl	69_37n	1	known	missense	c.1101	p.Q367H	0.960	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213	24	0	0	67	33	33	-	-	-	C	65084087	G	C	65084087	3	2	888	1	0	0	0	0	1	0	0	0	10539	933	33	2	1131	2	NLN	5	65084087	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		65084087	115831173	26	72142										
FAM169A	0	genome.wustl.edu	37	chr5	74096761	74096761	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ttttcatcttcaccttgagaActgctaaattcagaatcctg	5	10	4	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	5	74096761	74096761	A	G	SNP	FAM169A	ENST00000389156	human	ensembl	69_37n	-1	known	silent	c.1047	p.S349	0.636	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	50	0	0	90	20	18.18	-	-	-	G	74096761	A	G	74096761	2	3	888	1	0	0	0	0	0	0	0	1	5527	40	2	5		5	FAM169A	5	74096761	Silent	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	9012674	74096761	106818499	27	72143										
PCDHB4	0	genome.wustl.edu	37	chr5	140502124	140502124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctcattttcacattctcactCgaaatcatagtgagggcaag	7	10	4	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	5	140502124	140502124	C	G	SNP	PCDHB4	ENST00000194152	human	ensembl	69_37n	1	known	missense	c.544	p.R182G	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	29	0	0	42	33	44	-	-	-	G	140502124	C	G	140502124	3	3	888	1	0	0	0	0	1	0	0	0	11617	876	31	3	546	3	PCDHB4	5	140502124	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	66405363	140502124	40413136	28	72144										
FOXI1	0	genome.wustl.edu	37	chr5	169535450	169535450	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	accttcaactccttctccccGctcaccaacctcagcaacca	2	21	4	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	5	169535450	169535450	G	A	SNP	FOXI1	ENST00000306268	human	ensembl	69_37n	1	known	silent	c.972	p.P324	0.002	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269	17	0	0	21	10	32.26	-	-	-	A	169535450	G	A	169535450	2	1	888	1	0	0	0	0	0	0	0	1	6057	1074	38	1		1	FOXI1	5	169535450	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	29033326	169535450	11379810	29	72145										
ADAMTS2	0	genome.wustl.edu	37	chr5	178541264	178541264	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ttgttgtagcctgggatggaGcaatagcgggacaagacttc	14	7	0	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	5	178541264	178541264	G	C	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.3240	p.C1080W	1.000	pfscan_PLAC	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	40	0	0	56	31	35.23	-	-	-	C	178541264	G	C	178541264	3	2	888	1	0	0	0	0	1	0	0	0	265	963	34	4	399	4	ADAMTS2	5	178541264	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	9005814	178541264	2373996	30	72146										
DST	0	genome.wustl.edu	37	chr6	56358848	56358848	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tttccaccgattcccattttTctttcaagttatttatgtct	3	10	3	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	6	56358848	56358848	T	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.20261	p.E6754V	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	110	0	0	307	41	11.78	-	-	-	A	56358848	T	A	56358848	3	1	888	1	0	0	0	0	1	0	0	0	4818	1783	62	5	3114	5	DST	6	56358848	Missense_Mutation	SNP	T	TCGA-EW-A1IW-01A-11D-A13L-09		56358848	114756219	31	72147										
SNAP91	0	genome.wustl.edu	37	chr6	84372142	84372142	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gccaaatattgaataaatctCtgaaaaacaaaaattagaat	4	5	1	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	6	84372142	84372142	C	G	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	splice_site	c.274-1	e3-1	1.000	-	-	-	no_errors	SNAP91	HGNC	ENSG00000065609	25	0	0	45	22	32.84	-	-	-	G	84372142	C	G	84372142	5	3	888	1	0	0	0	0	0	0	1	0	14922	927	32	2	2550	2	SNAP91	6	84372142	Splice_Site	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	28013294	84372142	86742925	32	72148										
SYNE1	0	genome.wustl.edu	37	chr6	152570399	152570399	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	acagcactttcagatcattcTaaggaggaaagcaacgggaa	10	8	3	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	6	152570399	152570399	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	splice_site	c.19471-2	e103-2	0.997	-	-	-	no_errors	SYNE1	HGNC	ENSG00000131018	65	0	0	140	17	10.83	-	-	-	C	152570399	T	C	152570399	5	2	888	1	0	0	0	0	0	0	1	0	15537	1536	53	5	7165	5	SYNE1	6	152570399	Splice_Site	SNP	T	TCGA-EW-A1IW-01A-11D-A13L-09	68198257	152570399	18544668	33	72149										
TRA2A	0	genome.wustl.edu	37	chr7	23545770	23545770	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	acattacctgtatcggtaatCatagtcttcatatctgtcat	5	9	5	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	7	23545770	23545770	C	T	SNP	TRA2A	ENST00000297071	human	ensembl	69_37n	-1	known	missense	c.757	p.D253N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548	36	0	0	68	18	20.93	-	-	-	T	23545770	C	T	23545770	3	4	888	1	0	0	0	0	1	0	0	0	16529	826	29	2	103	2	TRA2A	7	23545770	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		23545770	135592893	34	72150										
GIMAP8	0	genome.wustl.edu	37	chr7	150171570	150171570	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	taagaaacagcaataaagctCtctatggtctcatccagaag	7	9	2	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	7	150171570	150171570	C	G	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.1153	p.L385V	0.990	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	20	0	0	53	9	14.52	-	-	-	G	150171570	C	G	150171570	3	3	888	1	0	0	0	0	1	0	0	0	6437	913	32	2	1163	2	GIMAP8	7	150171570	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	126625800	150171570	8967093	35	72151										
PPP1R3B	0	genome.wustl.edu	37	chr8	8998783	8998783	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gacgtggtcggcctgaagtcGatttctaaagtctaagtaat	11	7	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	8	8998783	8998783	G	A	SNP	PPP1R3B	ENST00000310455	human	ensembl	69_37n	-1	known	nonsense	c.379	p.R127*	0.992	pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281	27	0	0	51	14	21.54	-	-	-	A	8998783	G	A	8998783	4	1	888	1	0	0	0	0	0	1	0	0	12449	1066	37	1	482	1	PPP1R3B	8	8998783	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		8998783	137365239	36	72152										
PCM1	0	genome.wustl.edu	37	chr8	17819588	17819588	+	Frame_Shift_Del	DEL	C	C	-													0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gtcccaccaaaaaatatatgCcagctgttacttcaacccca							TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	8	17819588	17819588	C	-	DEL	PCM1	ENST00000325083	human	ensembl	69_37n	1	known	frame_shift_del	c.2368	p.P790fs	0.897	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	46	0	0	143	19	11.66	-	-	-	-	17819588	C	-	17819588	7	5	888	1	0	1	0	1	0	0	0	0	11657	739	26	0	2422	0	PCM1	8	17819588	Frame_Shift_Del	DEL	C	TCGA-EW-A1IW-01A-11D-A13L-09	8820805	17819588	128544434	37	72153										
NAPRT1	0	genome.wustl.edu	37	chr8	144657482	144657482	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cagcctgtggcactggctctTctgctaactgcagcatgtcc	10	14	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	8	144657482	144657482	T	C	SNP	NAPRT1	ENST00000276844	human	ensembl	69_37n	-1	known	missense	c.1325	p.E442G	0.993	superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-rel,tigrfam_Nic_PRibTrfase_put	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-rel,tigrfam_Nic_PRibTrfase_put	-	no_errors	NAPRT1	HGNC	ENSG00000147813	27	0	0	33	15	31.25	-	-	-	C	144657482	T	C	144657482	3	2	888	1	0	0	0	0	1	0	0	0	10237	1783	62	5	303	5	NAPRT1	8	144657482	Missense_Mutation	SNP	T	TCGA-EW-A1IW-01A-11D-A13L-09	126837894	144657482	1706540	38	72154										
RPL8	0	genome.wustl.edu	37	chr8	146017435	146017435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	aatccacggcgcgcaggcgcGcagcgcctttacggtgcttc	13	15	0	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	8	146017435	146017435	G	A	SNP	RPL8	ENST00000262584	human	ensembl	69_37n	-1	known	missense	c.80	p.A27V	1.000	pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016	9	0	0	20	8	28.57	-	-	-	A	146017435	G	A	146017435	3	1	888	1	0	0	0	0	1	0	0	0	13688	1087	38	1	713	1	RPL8	8	146017435	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	1359953	146017435	346587	39	72155										
ALDH1A1	0	genome.wustl.edu	37	chr9	75533709	75533709	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	accctcttcagattgcttttCccggcagcttctttgatcaa	6	13	4	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	9	75533709	75533709	C	T	SNP	ALDH1A1	ENST00000297785	human	ensembl	69_37n	-1	known	silent	c.777	p.G259	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092	30	0	0	47	23	32.86	-	-	-	T	75533709	C	T	75533709	2	4	888	1	0	0	0	0	0	0	0	1	490	842	30	2		2	ALDH1A1	9	75533709	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		75533709	65679722	40	72156										
HABP4	0	genome.wustl.edu	37	chr9	99252296	99252296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gcccccaacccagatgacccGgaagatttccctgcgctgtc	9	17	0	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	9	99252296	99252296	G	A	SNP	HABP4	ENST00000375249	human	ensembl	69_37n	1	known	silent	c.1218	p.P406	0.976	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956	63	0	0	96	12	11.11	-	-	-	A	99252296	G	A	99252296	2	1	888	1	0	0	0	0	0	0	0	1	6990	1103	39	1		1	HABP4	9	99252296	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	23718587	99252296	41961135	41	72157										
DOLK	0	genome.wustl.edu	37	chr9	131709581	131709582	+	Frame_Shift_Ins	INS	-	-	T													0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	agatgggcactctcgggtcaINStatctctagacctggggctt							TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	9	131709581	131709582	-	T	INS	DOLK	ENST00000372586	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.954:0.711	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283	10	0	0	7	4	36.36	-	-	-	T	131709582	-	T	131709581	7	5	888	1	0	1	1	0	0	0	0	0	4738	217	8	0	1618	0	DOLK	9	131709581	Frame_Shift_Ins	INS	-	TCGA-EW-A1IW-01A-11D-A13L-09	32457285	131709581	9503850	42	72158										
PTCHD3	0	genome.wustl.edu	37	chr10	27702459	27702459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gcttcccttttcccgcgccaCgcgcagatcctgcaccgcgc	9	20	0	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	10	27702459	27702459	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	69_37n	-1	known	missense	c.721	p.V241M	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	34	0	0	40	23	36.51	-	-	-	T	27702459	C	T	27702459	3	4	888	1	0	0	0	0	1	0	0	0	12814	536	19	1	1598	1	PTCHD3	10	27702459	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		27702459	107832288	43	72159										
MARCH8	0	genome.wustl.edu	37	chr10	45956754	45956754	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cagcagcgcgtgtcggagctCttgatccactgctgcaggca	13	13	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	10	45956754	45956754	C	T	SNP	MARCH8	ENST00000453424	human	ensembl	69_37n	-1	known	missense	c.841	p.E281K	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MARCH8	HGNC	ENSG00000165406	20	0	0	42	13	23.64	-	-	-	T	45956754	C	T	45956754	3	4	888	1	0	0	0	0	1	0	0	0	9378	912	32	2	539	2	MARCH8	10	45956754	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	18254295	45956754	89577993	44	72160										
MUC5B	0	genome.wustl.edu	37	chr11	1272374	1272374	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cagctttacacccatcccctCctccaccctgtggaccacgt	5	20	0	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	11	1272374	1272374	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.14273	p.S4758C	0.004	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	140	0	0	324	120	26.97	-	-	-	G	1272374	C	G	1272374	3	3	888	1	0	0	0	0	1	0	0	0	10051	855	30	2	14395	2	MUC5B	11	1272374	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		1272374	133734142	45	72161										
UBQLN3	0	genome.wustl.edu	37	chr11	5529922	5529922	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	atccttgaaggttggctggtGgtggtggtggcattatcagt	16	5	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	11	5529922	5529922	G	A	SNP	UBQLN3	ENST00000311659	human	ensembl	69_37n	-1	known	silent	c.867	p.T289	0.004	NULL	pfam_Ubiquitin,pfam_SUMO,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520	28	0	0	53	13	19.7	-	-	-	A	5529922	G	A	5529922	2	1	888	1	0	0	0	0	0	0	0	1	16995	1335	47	4		4	UBQLN3	11	5529922	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	4257548	5529922	129476594	46	72162										
ST5	0	genome.wustl.edu	37	chr11	8737243	8737243	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gagggtgaggacggcagactCagctgagccagcagcagcat	16	10	1	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	11	8737243	8737243	C	T	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	silent	c.1752	p.L584	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	35	0	0	28	23	45.1	-	-	-	T	8737243	C	T	8737243	2	4	888	1	0	0	0	0	0	0	0	1	15311	813	29	2		2	ST5	11	8737243	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	3207321	8737243	126269273	47	72163										
LDLRAD3	0	genome.wustl.edu	37	chr11	36119974	36119974	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gatggacagaataactgtcaAgacaacagtgatgaggaaag	12	5	1	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	11	36119974	36119974	A	G	SNP	LDLRAD3	ENST00000315571	human	ensembl	69_37n	1	known	silent	c.417	p.Q139	0.496	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD3	HGNC	ENSG00000179241	25	0	0	27	24	46.15	-	-	-	G	36119974	A	G	36119974	2	3	888	1	0	0	0	0	0	0	0	1	8761	69	3	5		5	LDLRAD3	11	36119974	Silent	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	27382731	36119974	98886542	48	72164										
ZBTB44	0	genome.wustl.edu	37	chr11	130109788	130109788	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cagaaacgccttcatctactGagcctgtgaataagagaaag	9	9	2	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	11	130109788	130109788	G	A	SNP	ZBTB44	ENST00000529982	human	ensembl	69_37n	-1	putative	nonsense	c.583	p.Q195*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZBTB44	HGNC	ENSG00000196323	41	0	0	70	13	15.66	-	-	-	A	130109788	G	A	130109788	4	1	888	1	0	0	0	0	0	1	0	0	17641	1294	45	2	355	2	ZBTB44	11	130109788	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	93989814	130109788	4896728	49	72165										
ESPL1	0	genome.wustl.edu	37	chr12	53679978	53679978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tgactgctcgctctgcgccaGccctgtcctcacagcagtct	9	17	3	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	12	53679978	53679978	G	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	1	known	missense	c.3458	p.S1153N	1.000	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	33	0	0	113	27	19.01	-	-	-	A	53679978	G	A	53679978	3	1	888	1	0	0	0	0	1	0	0	0	5290	971	34	4	3524	4	ESPL1	12	53679978	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		53679978	80171917	50	72166										
FLT3	0	genome.wustl.edu	37	chr13	28644705	28644705	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	aacacacttgatcacaggcaGatcttgatttgtaatagtcc	7	9	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	13	28644705	28644705	G	A	SNP	FLT3	ENST00000380982	human	ensembl	69_37n	-1	known	silent	c.88	p.L30	0.965	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC	ENSG00000122025	21	0	0	50	15	23.08	-	-	-	A	28644705	G	A	28644705	2	1	888	1	0	0	0	0	0	0	0	1	5988	933	33	2		2	FLT3	13	28644705	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		28644705	86525173	51	72167										
OR4N5	0	genome.wustl.edu	37	chr14	20612762	20612762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	accctgttatttatacgcttCgcaaccaggaggtgaaagct	9	10	0	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	14	20612762	20612762	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	69_37n	1	known	missense	c.868	p.R290C	0.999	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4N5	HGNC	ENSG00000184394	30	0	0	47	31	39.74	-	-	-	T	20612762	C	T	20612762	3	4	888	1	0	0	0	0	1	0	0	0	11152	884	31	1	870	1	OR4N5	14	20612762	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		20612762	86736778	52	72168										
FOXA1	0	genome.wustl.edu	37	chr14	38061193	38061193	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cggctgcttctcgcacttgaAgcgcttctggcggcgcaagt	13	13	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	14	38061193	38061193	A	T	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.796	p.F266I	1.000	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	16	0	0	14	9	39.13	-	-	-	T	38061193	A	T	38061193	3	4	888	1	0	0	0	0	1	0	0	0	6035	72	3	5	626	5	FOXA1	14	38061193	Missense_Mutation	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	17448431	38061193	69288347	53	72169										
SIPA1L1	0	genome.wustl.edu	37	chr14	72139139	72139139	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ggacagcttggcttccatgtCaactatgagggcattgtggc	13	9	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	14	72139139	72139139	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.2904	p.V968	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	42	0	0	69	19	21.59	-	-	-	T	72139139	C	T	72139139	2	4	888	1	0	0	0	0	0	0	0	1	14418	813	29	2		2	SIPA1L1	14	72139139	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	34077946	72139139	35210401	54	72170										
TTLL5	0	genome.wustl.edu	37	chr14	76349121	76349121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ccagtgccacagctagtggcCagaagccaaccactctgcca	9	16	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	14	76349121	76349121	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	nonsense	c.3616	p.Q1206*	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	52	0	0	83	25	23.15	-	-	-	T	76349121	C	T	76349121	4	4	888	1	0	0	0	0	0	1	0	0	16827	595	21	4	3730	4	TTLL5	14	76349121	Nonsense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	4209982	76349121	31000419	55	72171										
FBN1	0	genome.wustl.edu	37	chr15	48796053	48796053	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	agtgctggcgcaacagcattCagatttagtgacagcaccaa	10	10	1	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	15	48796053	48796053	C	T	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.2044	p.E682K	0.998	pfam_TB_dom,superfamily_TB_dom,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	39	0	0	84	35	29.17	-	-	-	T	48796053	C	T	48796053	3	4	888	1	0	0	0	0	1	0	0	0	5748	835	29	2	6771	2	FBN1	15	48796053	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		48796053	53735339	56	72172										
IL4R	0	genome.wustl.edu	37	chr16	27375082	27375082	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	cctgcccctggcaatgctcaGagctcaagccagacccccaa	8	18	2	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	16	27375082	27375082	G	A	SNP	IL4R	ENST00000170630	human	ensembl	69_37n	1	known	silent	c.2409	p.Q803	0.002	NULL	pfam_IL4Ra_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	25	0	0	44	25	36.23	-	-	-	A	27375082	G	A	27375082	2	1	888	1	0	0	0	0	0	0	0	1	7752	933	33	2		2	IL4R	16	27375082	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		27375082	62979671	57	72173										
CBFB	0	genome.wustl.edu	37	chr16	67070624	67070624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	acagcgacaaacacctagccGagagtatgtcgacttagaaa	9	10	0	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	16	67070624	67070624	G	T	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.248	p.R83L	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	33	0	0	44	30	40.54	-	-	-	T	67070624	G	T	67070624	3	4	888	1	0	0	0	0	1	0	0	0	2724	1058	37	3	258	3	CBFB	16	67070624	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	39695542	67070624	23284129	58	72174										
CDH15	0	genome.wustl.edu	37	chr16	89254603	89254603	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ggctccccaaactgggtggcCaggttcaccatcctggaagg	13	13	1	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	16	89254603	89254603	C	T	SNP	CDH15	ENST00000289746	human	ensembl	69_37n	1	known	silent	c.888	p.A296	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	18	0	0	17	11	39.29	-	-	-	T	89254603	C	T	89254603	2	4	888	1	0	0	0	0	0	0	0	1	3129	581	21	4		4	CDH15	16	89254603	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	22183979	89254603	1100150	59	72175										
DNAH9	0	genome.wustl.edu	37	chr17	11726132	11726132	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ttttagcccacagtaaagcaGtcgattagcaaattcatggc	8	9	1	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	17	11726132	11726132	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.9027	p.Q3009	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	60	0	0	43	29	40.28	-	-	-	A	11726132	G	A	11726132	2	1	888	1	0	0	0	0	0	0	0	1	4643	1020	36	4		4	DNAH9	17	11726132	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		11726132	69469078	60	72176										
KRT24	0	genome.wustl.edu	37	chr17	38855709	38855709	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ggtttaccctccctctccatCgagcaggcggcggtaggtct	12	14	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	17	38855709	38855709	C	G	SNP	KRT24	ENST00000264651	human	ensembl	69_37n	-1	known	missense	c.1348	p.D450H	0.988	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916	35	0	0	93	24	20.51	-	-	-	G	38855709	C	G	38855709	3	3	888	1	0	0	0	0	1	0	0	0	8514	884	31	3	241	3	KRT24	17	38855709	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	27129577	38855709	42339501	61	72177										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40653307	40653307	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gtccttcgccgtcagtatttGaggagaaagcatttggtagg	13	7	1	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	17	40653307	40653307	G	A	SNP	ATP6V0A1	ENST00000587510	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP6V0A1	HGNC	ENSG00000033627	114	0	0	238	92	27.88	-	-	-	A	40653307	G	A	40653307	3	1	888	1	0	0	0	0	1	0	0	0	1172	1281	45	2	2072	2	ATP6V0A1	17	40653307	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	1797598	40653307	40541903	62	72178										
FDXR	0	genome.wustl.edu	37	chr17	72863106	72863106	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	agagttcaggaccctgggctGagaacacaaggcttccaccc	11	13	1	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	17	72863106	72863106	G	A	SNP	FDXR	ENST00000442102	human	ensembl	69_37n	-1	novel	nonsense	c.199	p.Q67*	0.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	FDXR	HGNC	ENSG00000161513	13	0	0	18	5	20.83	-	-	-	A	72863106	G	A	72863106	4	1	888	1	0	0	0	0	0	1	0	0	5853	1305	45	2		2	FDXR	17	72863106	Nonsense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	32209799	72863106	8332104	63	72179										
ST6GALNAC1	0	genome.wustl.edu	37	chr17	74623304	74623304	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ggcactggagggaagcgtgtCacgaccttctgcaccactgg	14	12	2	0			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	17	74623304	74623304	C	T	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	69_37n	-1	known	silent	c.1017	p.V339	0.059	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526	17	0	0	22	12	35.29	-	-	-	T	74623304	C	T	74623304	2	4	888	1	0	0	0	0	0	0	0	1	15314	813	29	2		2	ST6GALNAC1	17	74623304	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	1760198	74623304	6571906	64	72180										
EEF2	0	genome.wustl.edu	37	chr19	3978146	3978146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctcttcactgaccgtctcgcGgtacgagacgaccgggtcag	12	14	4	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	19	3978146	3978146	G	A	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.1738	p.R580C	0.998	superfamily_Ribosomal_S5_D2-typ_fold	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	21	0	0	20	12	37.5	-	-	-	A	3978146	G	A	3978146	3	1	888	1	0	0	0	0	1	0	0	0	4964	1116	39	1	854	1	EEF2	19	3978146	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		3978146	55150837	65	72181										
EPOR	0	genome.wustl.edu	37	chr19	11488689	11488689	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	agccacatagctggggggcaGaggctcagcggctgggataa	17	9	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	19	11488689	11488689	G	T	SNP	EPOR	ENST00000222139	human	ensembl	69_37n	-1	known	missense	c.1498	p.L500M	0.000	pirsf_Erythropoietin_rcpt	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Erythropoietin_rcpt,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266	12	0	0	18	13	41.94	-	-	-	T	11488689	G	T	11488689	3	4	888	1	0	0	0	0	1	0	0	0	5226	933	33	2	32	2	EPOR	19	11488689	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	7510543	11488689	47640294	66	72182										
OR7C1	0	genome.wustl.edu	37	chr19	14910316	14910316	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	taagagaaaaatattccagtGaaggaaatcacacccaggac	8	8	1	2			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	19	14910316	14910316	G	A	SNP	OR7C1	ENST00000248073	human	ensembl	69_37n	-1	known	silent	c.633	p.F211	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	31	0	0	37	18	32.73	-	-	-	A	14910316	G	A	14910316	2	1	888	1	0	0	0	0	0	0	0	1	11290	1281	45	2		2	OR7C1	19	14910316	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	3421627	14910316	44218667	67	72183										
MAST3	0	genome.wustl.edu	37	chr19	18234421	18234421	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	caacggggaccttcgacaatGagattgtcatgatgaatcac	10	9	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	19	18234421	18234421	G	A	SNP	MAST3	ENST00000262811	human	ensembl	69_37n	1	known	missense	c.502	p.E168K	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	26	0	0	50	19	27.54	-	-	-	A	18234421	G	A	18234421	3	1	888	1	0	0	0	0	1	0	0	0	9397	1291	45	2	528	2	MAST3	19	18234421	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	3324105	18234421	40894562	68	72184										
RPRD1B	0	genome.wustl.edu	37	chr20	36668886	36668886	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tatttagcgaatgatgtcatCcaaaacagtaaaaggaaagg	9	5	1	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	20	36668886	36668886	C	G	SNP	RPRD1B	ENST00000373433	human	ensembl	69_37n	1	known	missense	c.201	p.I67M	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1B	HGNC	ENSG00000101413	112	0	0	298	100	25.13	-	-	-	G	36668886	C	G	36668886	3	3	888	1	0	0	0	0	1	0	0	0	13702	845	30	2	207	2	RPRD1B	20	36668886	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		36668886	26356634	69	72185										
DBNDD2	0	genome.wustl.edu	37	chr20	44037466	44037466	+	Frame_Shift_Del	DEL	G	G	-													0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ataggtagtatctcatccatGgaagtgaatgtggacacact							TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	20	44037466	44037466	G	-	DEL	DBNDD2	ENST00000372720	human	ensembl	69_37n	1	known	frame_shift_del	c.459	p.E154fs	1.000	pfam_Dysbindin	pfam_Dysbindin	-	no_errors	DBNDD2	HGNC	ENSG00000244274	24	0	0	75	20	20.62	-	-	-	-	44037466	G	-	44037466	7	5	888	1	0	1	0	1	0	0	0	0	4286	1348	47	0	171	0	DBNDD2	20	44037466	Frame_Shift_Del	DEL	G	TCGA-EW-A1IW-01A-11D-A13L-09	7368580	44037466	18988054	70	72186										
ADNP	0	genome.wustl.edu	37	chr20	49508731	49508731	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tcaaatagccactcagcatcAaaatccatctcatgcttgac	4	13	4	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	20	49508731	49508731	A	T	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.2520	p.F840L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	43	0	0	134	17	11.26	-	-	-	T	49508731	A	T	49508731	3	4	888	1	0	0	0	0	1	0	0	0	323	127	5	5	792	5	ADNP	20	49508731	Missense_Mutation	SNP	A	TCGA-EW-A1IW-01A-11D-A13L-09	5471265	49508731	13516789	71	72187										
COL9A3	0	genome.wustl.edu	37	chr20	61458599	61458599	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctcatcctttccagggtgacCgaggcgagaggggcccagaa	14	12	1	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	20	61458599	61458599	C	T	SNP	COL9A3	ENST00000343916	human	ensembl	69_37n	1	known	nonsense	c.799	p.R267*	0.970	NULL	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758	33	0	0	54	19	25.68	-	-	-	T	61458599	C	T	61458599	4	4	888	1	0	0	0	0	0	1	0	0	3739	644	23	1	861	1	COL9A3	20	61458599	Nonsense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	11949868	61458599	1566921	72	72188										
NRIP1	0	genome.wustl.edu	37	chr21	16339570	16339570	+	Frame_Shift_Del	DEL	T	T	-													0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	acattccttttgggagctggTaactgccaacatccttctgg							TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	21	16339570	16339570	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	frame_shift_del	c.944	p.Y315fs	0.379	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	34	0	0	57	10	14.93	-	-	-	-	16339570	T	-	16339570	7	5	888	1	0	1	0	1	0	0	0	0	10725	1638	57	0	2536	0	NRIP1	21	16339570	Frame_Shift_Del	DEL	T	TCGA-EW-A1IW-01A-11D-A13L-09		16339570	31790325	73	72189										
SIK1	0	genome.wustl.edu	37	chr21	44838354	44838354	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	gggcttttgctcgcagagaaGgtcagacaactgtcagagct	13	9	2	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	21	44838354	44838354	G	A	SNP	SIK1	ENST00000270162	human	ensembl	69_37n	-1	known	silent	c.1530	p.T510	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178	20	0	0	19	15	44.12	-	-	-	A	44838354	G	A	44838354	2	1	888	1	0	0	0	0	0	0	0	1	14406	987	35	4		4	SIK1	21	44838354	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	28498784	44838354	3291541	74	72190										
MYH9	0	genome.wustl.edu	37	chr22	36737526	36737526	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctcttcagagtagatgggcaGgttcttgtaaggattgatga	13	5	3	4			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	22	36737526	36737526	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	silent	c.379	p.L127	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	64	0	0	104	34	24.64	-	-	-	A	36737526	G	A	36737526	2	1	888	1	0	0	0	0	0	0	0	1	10114	991	35	4		4	MYH9	22	36737526	Silent	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09		36737526	14567040	75	72191										
WWC3	0	genome.wustl.edu	37	chrX	10058871	10058871	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	ctggatgaggcgcaggctatCatgagtgagctccggaccat	14	10	1	3			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	X	10058871	10058871	C	T	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	silent	c.438	p.I146	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	58	0	0	90	36	28.57	-	-	-	T	10058871	C	T	10058871	2	4	888	1	0	0	0	0	0	0	0	1	17510	816	29	2		2	WWC3	23	10058871	Silent	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09		10058871	145211689	76	72192										
GNL3L	0	genome.wustl.edu	37	chrX	54577449	54577449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	atagcctgaagcgcagccgcGcatgcagcgtgggagctgtt	15	11	0	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	X	54577449	54577449	G	T	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.829	p.A277S	1.000	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	24	0	0	67	21	23.86	-	-	-	T	54577449	G	T	54577449	3	4	888	1	0	0	0	0	1	0	0	0	6590	1087	38	3	863	3	GNL3L	23	54577449	Missense_Mutation	SNP	G	TCGA-EW-A1IW-01A-11D-A13L-09	44518578	54577449	100693111	77	72193										
TAF1	0	genome.wustl.edu	37	chrX	70617194	70617194	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371794871794872	29	5.30713258062924e-08	3.09690852625635	3.84443817052513	2.84773197816676	0.00920597471336853	0.128620618138206	20	tctgccactggacgctgtctCaagatttatcgcacgtttcg	9	12	2	1			TCGA-EW-A1IW-01A-11D-A13L-09	TCGA-EW-A1IW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b8732c3-78b1-409b-bc8c-c482575361bb	853ff819-807d-4569-b4e9-16f7f4cb59b3	X	70617194	70617194	C	T	SNP	TAF1	ENST00000483985	human	ensembl	69_37n	1	putative	missense	c.227	p.S76L	0.999	NULL	NULL	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	TAF1	HGNC	ENSG00000147133	50	0	0	147	36	19.67	-	-	-	T	70617194	C	T	70617194	3	4	888	1	0	0	0	0	1	0	0	0	15605	813	29	2	3648	2	TAF1	23	70617194	Missense_Mutation	SNP	C	TCGA-EW-A1IW-01A-11D-A13L-09	16039745	70617194	84653366	78	72194										
MYO7B	0	genome.wustl.edu	37	chr2	128394164	128394164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	gacgtcatcctcatcgccatCaaccgacatggggttctgct	9	14	4	0			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	2	128394164	128394164	C	G	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.6093	p.I2031M	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	57	0	0	34	4	10.53	-	-	-	G	128394164	C	G	128394164	3	3	889	1	0	0	0	0	1	0	0	0	10155	816	29	2	6264	2	MYO7B	2	128394164	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		128394164	114805209	1	72195										
SERPINI2	0	genome.wustl.edu	37	chr3	167183403	167183403	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	ttgaaataaatagcattcacCaggacaagccgagtcagagg	10	8	2	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	3	167183403	167183403	C	G	SNP	SERPINI2	ENST00000264677	human	ensembl	69_37n	-1	known	silent	c.537	p.L179	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204	78	0	0	38	12	24	-	-	-	G	167183403	C	G	167183403	2	3	889	1	0	0	0	0	0	0	0	1	14207	581	21	4		4	SERPINI2	3	167183403	Silent	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		167183403	30839027	2	72196										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	15	7	31.82	-	-	-	G	178952085	A	G	178952085	3	3	889	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-EW-A1IX-01A-12D-A142-09	11768682	178952085	19070345	3	72197										
SLIT2	0	genome.wustl.edu	37	chr4	20555534	20555534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	ttgctcgttgtgctggtcctGgagaaatggcagataaactt	12	7	0	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	4	20555534	20555534	G	C	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.2668	p.G890R	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	72	0	0	33	11	25	-	-	-	C	20555534	G	C	20555534	3	2	889	1	0	0	0	0	1	0	0	0	14829	1349	47	4	2770	4	SLIT2	4	20555534	Missense_Mutation	SNP	G	TCGA-EW-A1IX-01A-12D-A142-09		20555534	170598742	4	72198										
TBX20	0	genome.wustl.edu	37	chr7	35244129	35244129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	cccccaagacatcttcttctCctccgtaggtacggatgggt	9	14	3	1			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	35244129	35244129	C	T	SNP	TBX20	ENST00000408931	human	ensembl	69_37n	-1	known	missense	c.956	p.G319E	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX20	HGNC	ENSG00000164532	51	0	0	36	4	10	-	-	-	T	35244129	C	T	35244129	3	4	889	1	0	0	0	0	1	0	0	0	15751	855	30	2	394	2	TBX20	7	35244129	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		35244129	123894534	5	72199										
PGAM2	0	genome.wustl.edu	37	chr7	44104972	44104972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	cactgacgtgtagcagatgtCaaactccatcttggcatcct	8	12	2	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	44104972	44104972	C	G	SNP	PGAM2	ENST00000297283	human	ensembl	69_37n	-1	known	missense	c.157	p.D53H	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM2	HGNC	ENSG00000164708	59	0	0	34	6	15	-	-	-	G	44104972	C	G	44104972	3	3	889	1	0	0	0	0	1	0	0	0	11848	826	29	2	616	2	PGAM2	7	44104972	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09	8860843	44104972	115033691	6	72200										
ASB10	0	genome.wustl.edu	37	chr7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-													0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	gagaggtatatgccaaaggcAgagagagagagagagagcag							TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	12	0	0	10	3	23.08	-	-	-	-	150884268	AG	-	150884267	7	5	889	1	0	1	0	1	0	0	0	0	1018	203	7	0		0	ASB10	7	150884267	Frame_Shift_Del	DEL	AG	TCGA-EW-A1IX-01A-12D-A142-09	106779295	150884267	8254396	7	72201										
FAM22G	0	genome.wustl.edu	37	chr9	99699543	99699543	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	tggaggagctgctggggtctCaccctggggacacaggggag	19	9	1	0			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	9	99699543	99699543	C	T	SNP	FAM22G	ENST00000372322	human	ensembl	69_37n	1	known	missense	c.1180	p.H394Y	0.000	NULL	NULL	-	no_errors	FAM22G	HGNC	ENSG00000188152	62	0	0	31	4	11.43	-	-	-	T	99699543	C	T	99699543	3	4	889	1	0	0	0	0	1	0	0	0	5588	826	29	2	1198	2	FAM22G	9	99699543	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		99699543	41513888	8	72202										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123223027	123223027	+	Splice_Site	DEL	T	T	-													0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	atgaataagtcagtgatgtcTttttttttttaatgcaaaac							TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	9	123223027	123223027	T	-	DEL	CDK5RAP2	ENST00000480112	human	ensembl	69_37n	-1	known	splice_site_del	c.2104-2	e19-2	0.979	-	-	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	27	0	0	22	4	15.38	-	-	-	-	123223027	T	-	123223027	8	5	889	1	0	1	0	1	0	0	1	0	3175	1624	56	0		0	CDK5RAP2	9	123223027	Splice_Site	DEL	T	TCGA-EW-A1IX-01A-12D-A142-09	23523484	123223027	17990404	9	72203										
GNPTAB	0	genome.wustl.edu	37	chr12	102151069	102151069	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	cattttaaaagcgatttcttCttctcccatgatttcaaacc	3	11	4	1			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	12	102151069	102151069	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	69_37n	-1	known	missense	c.3355	p.E1119K	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670	87	0	0	40	5	11.11	-	-	-	T	102151069	C	T	102151069	3	4	889	1	0	0	0	0	1	0	0	0	6597	922	32	2	431	2	GNPTAB	12	102151069	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		102151069	31700826	10	72204										
ULK1	0	genome.wustl.edu	37	chr12	132403858	132403858	+	Frame_Shift_Del	DEL	G	G	-													0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	ggcagcgccagtgaggcggcGgggggccctgagtaccagct							TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	12	132403858	132403858	G	-	DEL	ULK1	ENST00000321867	human	ensembl	69_37n	1	known	frame_shift_del	c.2613	p.G873fs	0.001	pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	10	0	0	4	2	33.33	-	-	-	-	132403858	G	-	132403858	7	5	889	1	0	1	0	1	0	0	0	0	17072	1103	39	0	2707	0	ULK1	12	132403858	Frame_Shift_Del	DEL	G	TCGA-EW-A1IX-01A-12D-A142-09	30252789	132403858	1448037	11	72205										
KPNA3	0	genome.wustl.edu	37	chr13	50296658	50296658	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	tgcttgttcacaaacattctGatgtggtgaacgaagaagtc	10	7	2	3			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	13	50296658	50296658	G	A	SNP	KPNA3	ENST00000261667	human	ensembl	69_37n	-1	known	nonsense	c.511	p.Q171*	1.000	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753	34	0	0	32	6	15.79	-	-	-	A	50296658	G	A	50296658	4	1	889	1	0	0	0	0	0	1	0	0	8484	1299	45	2	1094	2	KPNA3	13	50296658	Nonsense_Mutation	SNP	G	TCGA-EW-A1IX-01A-12D-A142-09		50296658	64873220	12	72206										
ZZEF1	0	genome.wustl.edu	37	chr17	3975955	3975955	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	gcttgcttctaattccaactCtggacaaacctgatgcctga	7	12	2	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	3975955	3975955	C	G	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	missense	c.3781	p.E1261Q	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	70	0	0	35	4	10.26	-	-	-	G	3975955	C	G	3975955	3	3	889	1	0	0	0	0	1	0	0	0	18346	922	32	2	5228	2	ZZEF1	17	3975955	Missense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		3975955	77219255	13	72207										
TOB1	0	genome.wustl.edu	37	chr17	48940939	48940939	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	atggagagctggacactgatGaggctgggtcacttatgggc	16	7	1	3			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	48940939	48940939	G	A	SNP	TOB1	ENST00000268957	human	ensembl	69_37n	-1	known	missense	c.440	p.S147L	1.000	NULL	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB1	HGNC	ENSG00000141232	58	0	0	37	5	11.9	-	-	-	A	48940939	G	A	48940939	3	1	889	1	0	0	0	0	1	0	0	0	16442	1294	45	2	601	2	TOB1	17	48940939	Missense_Mutation	SNP	G	TCGA-EW-A1IX-01A-12D-A142-09	44964984	48940939	32254271	14	72208										
PRX	0	genome.wustl.edu	37	chr19	40900968	40900968	+	Frame_Shift_Del	DEL	G	G	-													0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	agcgtgaccagctccacctcGgggatcttaagctgcacagc							TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	19	40900968	40900968	G	-	DEL	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	frame_shift_del	c.3291	p.E1098fs	0.105	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	26	0	0	16	2	11.11	-	-	-	-	40900968	G	-	40900968	7	5	889	1	0	1	0	1	0	0	0	0	12722	1103	39	0	1098	0	PRX	19	40900968	Frame_Shift_Del	DEL	G	TCGA-EW-A1IX-01A-12D-A142-09		40900968	18228015	15	72209										
ZNF701	0	genome.wustl.edu	37	chr19	53079273	53079273	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	tataggaacctggtctccctGggtgaggataacttccctcc	10	12	1	1			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	19	53079273	53079273	G	A	SNP	ZNF701	ENST00000301093	human	ensembl	69_37n	1	known	silent	c.339	p.L113	0.988	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	56	0	0	32	4	11.11	-	-	-	A	53079273	G	A	53079273	2	1	889	1	0	0	0	0	0	0	0	1	18201	1362	47	4		4	ZNF701	19	53079273	Silent	SNP	G	TCGA-EW-A1IX-01A-12D-A142-09	12178305	53079273	6049710	16	72210										
DLG3	0	genome.wustl.edu	37	chrX	69722031	69722031	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.470588235294118	8	0.00224105238652894	3.85185185185185	3.85185185185185	3.85185185185185	1	1	6	agccattgtacagggtgactCactggaagagatttataaca	10	7	1	2			TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	X	69722031	69722031	C	G	SNP	DLG3	ENST00000194900	human	ensembl	69_37n	1	known	nonsense	c.2462	p.S821*	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG3	HGNC	ENSG00000082458	94	0	0	54	9	14.29	-	-	-	G	69722031	C	G	69722031	4	3	889	1	0	0	0	0	0	1	0	0	4592	838	29	2	2728	2	DLG3	23	69722031	Nonsense_Mutation	SNP	C	TCGA-EW-A1IX-01A-12D-A142-09		69722031	85548529	17	72211										
ACAP3	0	genome.wustl.edu	37	chr1	1238556	1238556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	cctcaccgagatgacggtgtCgccctggcactgctgggaca	13	14	1	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	1238556	1238556	C	T	SNP	ACAP3	ENST00000353662	human	ensembl	69_37n	-1	known	missense	c.85	p.D29N	0.985	NULL	pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ACAP3	HGNC	ENSG00000131584	9	0	0	18	4	18.18	-	-	-	T	1238556	C	T	1238556	3	4	890	1	0	0	0	0	1	0	0	0	120	884	31	1	2381	1	ACAP3	1	1238556	Missense_Mutation	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09		1238556	248012065	1	72212										
RPS6KA1	0	genome.wustl.edu	37	chr1	26882081	26882081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	tgaagcccagagcctcttgcGggccctgttcaagcggaatc	12	13	2	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	26882081	26882081	G	A	SNP	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	missense	c.908	p.R303Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	42	0	0	39	9	18.75	-	-	-	A	26882081	G	A	26882081	3	1	890	1	0	0	0	0	1	0	0	0	13736	1116	39	1	1062	1	RPS6KA1	1	26882081	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	25643525	26882081	222368540	2	72213										
YY1AP1	0	genome.wustl.edu	37	chr1	155658085	155658085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gcaaccgacactgggatcgtTtcccctcgcaaagcgaaccc	9	16	0	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	155658085	155658085	T	C	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	silent	c.171	p.E57	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	8	0	0	4	14	77.78	-	-	-	C	155658085	T	C	155658085	2	2	890	1	0	0	0	0	0	0	0	1	17605	1856	64	5		5	YY1AP1	1	155658085	Silent	SNP	T	TCGA-EW-A1IY-01A-11D-A188-09	128776004	155658085	93592536	3	72214										
KIF21B	0	genome.wustl.edu	37	chr1	200969064	200969064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gttctcctgttggagttttgCcctctttttgaaggcttcct	9	10	2	1			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	200969064	200969064	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.1714	p.A572T	0.841	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	114	0	0	189	31	14.09	-	-	-	T	200969064	C	T	200969064	3	4	890	1	0	0	0	0	1	0	0	0	8341	739	26	4	3252	4	KIF21B	1	200969064	Missense_Mutation	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09	45310979	200969064	48281557	4	72215										
TARBP1	0	genome.wustl.edu	37	chr1	234566023	234566023	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	agccatgctcactactctctGaatctgacttccaactgttg	6	13	3	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	234566023	234566023	G	C	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.2419	p.Q807E	1.000	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	31	0	0	26	16	36.36	-	-	-	C	234566023	G	C	234566023	3	2	890	1	0	0	0	0	1	0	0	0	15647	1299	45	2	2510	2	TARBP1	1	234566023	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	33596959	234566023	14684598	5	72216										
PEX13	0	genome.wustl.edu	37	chr2	61258802	61258802	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	cctccgtgtagatgatcttcCacccagtagatttgttcagc	8	12	2	3			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	2	61258802	61258802	C	G	SNP	PEX13	ENST00000295030	human	ensembl	69_37n	1	known	missense	c.341	p.P114R	1.000	pfam_Peroxin-13_N	pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PEX13	HGNC	ENSG00000162928	108	0	0	81	28	25.23	-	-	-	G	61258802	C	G	61258802	3	3	890	1	0	0	0	0	1	0	0	0	11815	594	21	4	347	4	PEX13	2	61258802	Missense_Mutation	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09		61258802	181940571	6	72217										
ABCA12	0	genome.wustl.edu	37	chr2	215818580	215818580	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	tgttttcattatatttacctGagtttctttatcagggattc	6	6	3	1			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	2	215818580	215818580	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	silent	c.6645	p.L2215	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	49	0	0	53	15	22.06	-	-	-	A	215818580	G	A	215818580	2	1	890	1	0	0	0	0	0	0	0	1	30	1277	45	2		2	ABCA12	2	215818580	Silent	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	154559778	215818580	27380793	7	72218										
SH3BP4	0	genome.wustl.edu	37	chr2	235950440	235950440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gcatcagcatccacgtgcccGagggccacgtcgcccctggg	13	17	1	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	2	235950440	235950440	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.1027	p.E343K	1.000	pfam_ZU5	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	8	0	0	8	4	33.33	-	-	-	A	235950440	G	A	235950440	3	1	890	1	0	0	0	0	1	0	0	0	14334	1059	37	1	1033	1	SH3BP4	2	235950440	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	20131860	235950440	7248933	8	72219										
FLNB	0	genome.wustl.edu	37	chr3	58154202	58154202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	tctttattaacaccacccgaGcaggtccagggacattatcc	7	13	1	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	3	58154202	58154202	G	T	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	1	known	missense	c.7234	p.A2412S	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	76	0	0	44	21	32.31	-	-	-	T	58154202	G	T	58154202	3	4	890	1	0	0	0	0	1	0	0	0	5980	971	34	4	7505	4	FLNB	3	58154202	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09		58154202	139868228	9	72220										
MUC4	0	genome.wustl.edu	37	chr3	195506258	195506258	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	ggaagggctggtgacatgaaGaggggtggcgtgacctgtgg	21	5	0	4			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	3	195506258	195506258	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12193	p.L4065V	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	126	0	0	114	54	32.14	-	-	-	C	195506258	G	C	195506258	3	2	890	1	0	0	0	0	1	0	0	0	10050	942	33	2		2	MUC4	3	195506258	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	137352056	195506258	2516172	10	72221										
LTV1	0	genome.wustl.edu	37	chr6	144184640	144184640	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gagctgctgaacttgaagaaGaatgttgagggtctaaagct	13	5	1	5			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	144184640	144184640	G	A	SNP	LTV1	ENST00000367576	human	ensembl	69_37n	1	known	silent	c.1404	p.K468	0.732	NULL	pfam_LTV	-	no_errors	LTV1	HGNC	ENSG00000135521	57	0	0	71	22	23.66	-	-	-	A	144184640	G	A	144184640	2	1	890	1	0	0	0	0	0	0	0	1	9147	933	33	2		2	LTV1	6	144184640	Silent	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09		144184640	26930427	11	72222										
ULBP2	0	genome.wustl.edu	37	chr6	150267715	150267715	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	catgtccttccattacttctCaatgggagactgtataggat	8	9	1	1			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	150267715	150267715	C	G	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	1	known	nonsense	c.557	p.S186*	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	241	0	0	243	54	18.18	-	-	-	G	150267715	C	G	150267715	4	3	890	1	0	0	0	0	0	1	0	0	17070	838	29	2	567	2	ULBP2	6	150267715	Nonsense_Mutation	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09	6083075	150267715	20847352	12	72223										
ALAD	0	genome.wustl.edu	37	chr9	116155798	116155798	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gtctgccaggcccgaagtagTgggtggaagtagccgctgtg	17	9	1	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	9	116155798	116155798	T	C	SNP	ALAD	ENST00000409155	human	ensembl	69_37n	-1	known	silent	c.42	p.P14	0.003	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218	70	0	0	129	26	16.67	-	-	-	C	116155798	T	C	116155798	2	2	890	1	0	0	0	0	0	0	0	1	483	1683	59	5		5	ALAD	9	116155798	Silent	SNP	T	TCGA-EW-A1IY-01A-11D-A188-09		116155798	25057633	13	72224										
PAPPA	0	genome.wustl.edu	37	chr9	119106938	119106938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	ccagtgtactgtgagctgccGgacaggctacgtgctccaga	13	12	0	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	9	119106938	119106938	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.3728	p.R1243Q	0.158	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	36	0	0	64	11	14.67	-	-	-	A	119106938	G	A	119106938	3	1	890	1	0	0	0	0	1	0	0	0	11505	1116	39	1	3782	1	PAPPA	9	119106938	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	2951140	119106938	22106493	14	72225										
CDH23	0	genome.wustl.edu	37	chr10	73501658	73501658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	tggtggccactgtggaggacGagggcaccccaaccctgtcg	15	13	0	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	73501658	73501658	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.4834	p.E1612K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	15	0	0	22	7	24.14	-	-	-	A	73501658	G	A	73501658	3	1	890	1	0	0	0	0	1	0	0	0	3137	1059	37	1	5316	1	CDH23	10	73501658	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09		73501658	62033089	15	72226										
TACC2	0	genome.wustl.edu	37	chr10	123845984	123845984	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	agaaccactgagggaccagtGgactccatgccatgcctgga	12	12	0	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	123845984	123845984	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	silent	c.3969	p.V1323	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	40	0	0	27	7	20.59	-	-	-	A	123845984	G	A	123845984	2	1	890	1	0	0	0	0	0	0	0	1	15594	1335	47	4		4	TACC2	10	123845984	Silent	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	50344326	123845984	11688763	16	72227										
HTRA1	0	genome.wustl.edu	37	chr10	124269648	124269648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	gaagaagtatattggtatccGaatgatgtcactcacgtcca	9	8	2	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	124269648	124269648	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	69_37n	1	known	missense	c.1157	p.R386Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	55	0	0	42	18	30	-	-	-	A	124269648	G	A	124269648	3	1	890	1	0	0	0	0	1	0	0	0	7507	1058	37	1	1183	1	HTRA1	10	124269648	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09	423664	124269648	11265099	17	72228										
PRR5L	0	genome.wustl.edu	37	chr11	36453429	36453429	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	cttcttgcaaaaggactgttCtttgtggaggagaagatcaa	11	6	3	2			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	11	36453429	36453429	C	T	SNP	PRR5L	ENST00000378867	human	ensembl	69_37n	1	known	silent	c.321	p.F107	0.999	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362	164	0	0	160	43	21.18	-	-	-	T	36453429	C	T	36453429	2	4	890	1	0	0	0	0	0	0	0	1	12682	912	32	2		2	PRR5L	11	36453429	Silent	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09		36453429	98553087	18	72229										
ZMYM2	0	genome.wustl.edu	37	chr13	20625607	20625608	+	Frame_Shift_Del	DEL	CT	CT	-													0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	ctgttgtaaatctcaaggaaCtcttaaagagcgagttcagt							TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	13	20625607	20625608	CT	-	DEL	ZMYM2	ENST00000382869	human	ensembl	69_37n	1	known	frame_shift_del	c.2327_2328	p.L777fs	0.998:0.995	pfam_Znf_MYM,smart_TRASH	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM2	HGNC	ENSG00000121741	89	0	0	64	18	21.95	-	-	-	-	20625608	CT	-	20625607	7	5	890	1	0	1	0	1	0	0	0	0	17796	565	20	0	2369	0	ZMYM2	13	20625607	Frame_Shift_Del	DEL	CT	TCGA-EW-A1IY-01A-11D-A188-09		20625607	94544271	19	72230										
TRIP11	0	genome.wustl.edu	37	chr14	92470730	92470730	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	attgattactattaacacctCcagcctcattaccagtgctg	5	12	1	1			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	14	92470730	92470730	C	T	SNP	TRIP11	ENST00000554357	human	ensembl	69_37n	-1	novel	nonsense	c.2736	p.W912*	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIP11	HGNC	ENSG00000100815	49	0	0	50	12	19.35	-	-	-	T	92470730	C	T	92470730	4	4	890	1	0	0	0	0	0	1	0	0	16651	855	30	2	2393	2	TRIP11	14	92470730	Nonsense_Mutation	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09		92470730	14878810	20	72231										
MAGEL2	0	genome.wustl.edu	37	chr15	23889494	23889494	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	aacttgaacagaaaattaaaGatcagatcctccctgacaca	5	10	1	5			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	15	23889494	23889494	G	C	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.1587	p.I529M	0.138	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	37	0	0	50	14	21.88	-	-	-	C	23889494	G	C	23889494	3	2	890	1	0	0	0	0	1	0	0	0	9260	932	33	2	357	2	MAGEL2	15	23889494	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09		23889494	78641898	21	72232										
SCAMP5	0	genome.wustl.edu	37	chr15	75305052	75305052	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	ttcccaccattgcccaaattCatcccgctgaagccatgttt	5	15	1	1			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	15	75305052	75305052	C	T	SNP	SCAMP5	ENST00000562212	human	ensembl	69_37n	1	known	silent	c.42	p.F14	1.000	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP5	HGNC	ENSG00000198794	81	0	0	74	19	20.43	-	-	-	T	75305052	C	T	75305052	2	4	890	1	0	0	0	0	0	0	0	1	13961	825	29	2		2	SCAMP5	15	75305052	Silent	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09	51415558	75305052	27226340	22	72233										
IFT140	0	genome.wustl.edu	37	chr16	1570681	1570681	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	cgcatgcagcagtctgctatCtgctccagcagctcccgccg	10	17	2	0			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	16	1570681	1570681	C	T	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.3582	p.Q1194	1.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	14	0	0	11	13	54.17	-	-	-	T	1570681	C	T	1570681	2	4	890	1	0	0	0	0	0	0	0	1	7610	912	32	2		2	IFT140	16	1570681	Silent	SNP	C	TCGA-EW-A1IY-01A-11D-A188-09		1570681	88784072	23	72234										
CTCF	0	genome.wustl.edu	37	chr16	67645412	67645412	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	agatgtagatgtgtctgtctAcgattttgaggaagaacagc	12	5	2	4			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	16	67645412	67645412	A	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	1	known	missense	c.677	p.Y226C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	73	0	0	30	10	25	-	-	-	G	67645412	A	G	67645412	3	3	890	1	0	0	0	0	1	0	0	0	4032	391	14	5	679	5	CTCF	16	67645412	Missense_Mutation	SNP	A	TCGA-EW-A1IY-01A-11D-A188-09	66074731	67645412	22709341	24	72235										
WDR44	0	genome.wustl.edu	37	chrX	117578415	117578415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.36	9	0.0107152468341043	2.96298701298701	5.26753246753247	2.19480519480519	1	1	6	ctgaaaaatcagaagggaacGagaaaagtgaagatgctgaa	12	4	1	6			TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	X	117578415	117578415	G	A	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.2605	p.E869K	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	130	0	0	100	29	22.31	-	-	-	A	117578415	G	A	117578415	3	1	890	1	0	0	0	0	1	0	0	0	17393	1059	37	1	2679	1	WDR44	23	117578415	Missense_Mutation	SNP	G	TCGA-EW-A1IY-01A-11D-A188-09		117578415	37692145	25	72236										
CDK11B	0	genome.wustl.edu	37	chr1	1573880	1573880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acctgttttcttgtcttttgCtctgtagaccactccatagg	7	11	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	1573880	1573880	C	T	SNP	CDK11B	ENST00000407249	human	ensembl	69_37n	-1	known	missense	c.1333	p.A445T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK11B	HGNC	ENSG00000248333	142	0	0	45	7	13.46	-	-	-	T	1573880	C	T	1573880	3	4	891	1	0	0	0	0	1	0	0	0	3156	797	28	4	1060	4	CDK11B	1	1573880	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		1573880	247676741	1	72237										
NPHP4	0	genome.wustl.edu	37	chr1	5925191	5925191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctggggatgagaggtgaaagCtctcactttcctcactgtct	11	10	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	5925191	5925191	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.3787	p.A1263T	0.994	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	18	0	0	13	6	31.58	-	-	-	T	5925191	C	T	5925191	3	4	891	1	0	0	0	0	1	0	0	0	10653	797	28	4	509	4	NPHP4	1	5925191	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4351311	5925191	243325430	2	72238										
APITD1	0	genome.wustl.edu	37	chr1	10502382	10502382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttaacctagaacgaaaagcaCagaagaaaaagaagtcagag	9	6	1	5			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	10502382	10502382	C	A	SNP	APITD1	ENST00000309048	human	ensembl	69_37n	1	known	missense	c.337	p.Q113K	0.776	NULL	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	APITD1	HGNC	ENSG00000175279	49	0	0	34	4	10.53	-	-	-	A	10502382	C	A	10502382	3	1	891	1	0	0	0	0	1	0	0	0	776	479	17	4	355	4	APITD1	1	10502382	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4577191	10502382	238748239	3	72239										
PLOD1	0	genome.wustl.edu	37	chr1	12030842	12030842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggagtacattgcgcccatgaCggagaagctctaccccggct	12	13	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	12030842	12030842	C	T	SNP	PLOD1	ENST00000376369	human	ensembl	69_37n	1	known	missense	c.2012	p.T671M	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444	36	0	0	18	5	21.74	-	-	-	T	12030842	C	T	12030842	3	4	891	1	0	0	0	0	1	0	0	0	12175	536	19	1	1937	1	PLOD1	1	12030842	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	1528460	12030842	237219779	4	72240										
AGMAT	0	genome.wustl.edu	37	chr1	15906613	15906613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttgccatcgcttgcaatatgGgatatgtgattgtgtgatct	11	6	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	15906613	15906613	G	A	SNP	AGMAT	ENST00000375826	human	ensembl	69_37n	-1	known	missense	c.500	p.P167L	1.000	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771	135	1	0.74	69	9	11.54	-	-	-	A	15906613	G	A	15906613	3	1	891	1	0	0	0	0	1	0	0	0	385	1232	43	4	578	4	AGMAT	1	15906613	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3875771	15906613	233344008	5	72241										
SPEN	0	genome.wustl.edu	37	chr1	16256950	16256950	+	Frame_Shift_Del	DEL	T	T	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tatgaaagttctcgattgtcTtttttattgagggacagaga							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	16256950	16256950	T	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_del	c.4215	p.L1407fs	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	35	0	0	29	6	17.14	-	-	-	-	16256950	T	-	16256950	7	5	891	1	0	1	0	1	0	0	0	0	15129	1596	56	0	4257	0	SPEN	1	16256950	Frame_Shift_Del	DEL	T	TCGA-EW-A1IZ-01A-11D-A188-09	350337	16256950	232993671	6	72242										
CELA3B	0	genome.wustl.edu	37	chr1	22310304	22310304	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagacaccctgctacatcacCggctggggccgtctctatag	11	14	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	22310304	22310304	C	T	SNP	CELA3B	ENST00000337107	human	ensembl	69_37n	1	known	silent	c.480	p.T160	0.237	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA3B	HGNC	ENSG00000219073	29	0	0	22	6	21.43	-	-	-	T	22310304	C	T	22310304	2	4	891	1	0	0	0	0	0	0	0	1	3243	639	23	1		1	CELA3B	1	22310304	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6053354	22310304	226940317	7	72243										
DHDDS	0	genome.wustl.edu	37	chr1	26764736	26764736	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aagaagtgccaggtggagcgGcaggaaggccactcacaggg	17	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	26764736	26764736	G	A	SNP	DHDDS	ENST00000360009	human	ensembl	69_37n	1	known	silent	c.141	p.R47	0.863	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682	67	0	0	44	5	10.2	-	-	-	A	26764736	G	A	26764736	2	1	891	1	0	0	0	0	0	0	0	1	4514	1190	42	4		4	DHDDS	1	26764736	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	4454432	26764736	222485885	8	72244										
SFN	0	genome.wustl.edu	37	chr1	27189737	27189737	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtctgatccagaaggccaagCtggcagagcaggccgaacgc	14	12	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	27189737	27189737	C	T	SNP	SFN	ENST00000339276	human	ensembl	69_37n	1	known	silent	c.34	p.L12	0.985	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	SFN	HGNC	ENSG00000175793	23	0	0	14	7	33.33	-	-	-	T	27189737	C	T	27189737	2	4	891	1	0	0	0	0	0	0	0	1	14247	796	28	4		4	SFN	1	27189737	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	425001	27189737	222060884	9	72245										
KIAA1522	0	genome.wustl.edu	37	chr1	33233495	33233495	+	Frame_Shift_Del	DEL	C	C	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcttctttcccagtgggcgaCccccccacctggaagagctg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	33233495	33233495	C	-	DEL	KIAA1522	ENST00000401073	human	ensembl	69_37n	1	known	frame_shift_del	c.343	p.H117fs	0.980	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522	26	0	0	16	4	20	-	-	-	-	33233495	C	-	33233495	7	5	891	1	0	1	0	1	0	0	0	0	8290	507	18	0	349	0	KIAA1522	1	33233495	Frame_Shift_Del	DEL	C	TCGA-EW-A1IZ-01A-11D-A188-09	6043758	33233495	216017126	10	72246										
DNALI1	0	genome.wustl.edu	37	chr1	38023344	38023344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atcttgaatgccatactaccCccaaggtaagaaagtaggag	9	9	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	38023344	38023344	C	T	SNP	DNALI1	ENST00000541606	human	ensembl	69_37n	1	known	missense	c.14	p.P5L	0.986	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	DNALI1	HGNC	ENSG00000163879	46	0	0	37	9	19.57	-	-	-	T	38023344	C	T	38023344	3	4	891	1	0	0	0	0	1	0	0	0	4694	610	22	4	294	4	DNALI1	1	38023344	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4789849	38023344	211227277	11	72247										
MANEAL	0	genome.wustl.edu	37	chr1	38265584	38265584	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atccccagtgtggggcctggCtacatagacaccagcattcg	11	13	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	38265584	38265584	C	T	SNP	MANEAL	ENST00000373045	human	ensembl	69_37n	1	known	silent	c.1083	p.G361	1.000	NULL	NULL	-	no_errors	MANEAL	HGNC	ENSG00000185090	35	0	0	33	9	21.43	-	-	-	T	38265584	C	T	38265584	2	4	891	1	0	0	0	0	0	0	0	1	9293	784	28	4		4	MANEAL	1	38265584	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	242240	38265584	210985037	12	72248										
LEPRE1	0	genome.wustl.edu	37	chr1	43215952	43215952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgatgcgccgcaccttctccGtcacgttgtagtacaggtgg	12	12	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	43215952	43215952	G	A	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1625	p.T542M	0.996	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	47	0	0	19	6	24	-	-	-	A	43215952	G	A	43215952	3	1	891	1	0	0	0	0	1	0	0	0	8783	1145	40	1	624	1	LEPRE1	1	43215952	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	4950368	43215952	206034669	13	72249										
CCDC24	0	genome.wustl.edu	37	chr1	44461500	44461500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aggagctgcaggcatctgtgGggccttcttgtgtctctccc	13	12	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	44461500	44461500	G	A	SNP	CCDC24	ENST00000372318	human	ensembl	69_37n	1	known	missense	c.673	p.G225R	0.000	NULL	NULL	-	no_errors	CCDC24	HGNC	ENSG00000159214	43	0	0	21	4	16	-	-	-	A	44461500	G	A	44461500	3	1	891	1	0	0	0	0	1	0	0	0	2825	1232	43	4	699	4	CCDC24	1	44461500	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1245548	44461500	204789121	14	72250										
PDZK1IP1	0	genome.wustl.edu	37	chr1	47650716	47650716	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agtaccttccatctgttcccAccaggactccatctgccttg	6	16	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	47650716	47650716	A	G	SNP	PDZK1IP1	ENST00000294338	human	ensembl	69_37n	-1	known	missense	c.230	p.V77A	0.155	NULL	NULL	-	no_errors	PDZK1IP1	HGNC	ENSG00000162366	64	0	0	25	7	21.21	-	-	-	G	47650716	A	G	47650716	3	3	891	1	0	0	0	0	1	0	0	0	11781	159	6	5	122	5	PDZK1IP1	1	47650716	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	3189216	47650716	201599905	15	72251										
ECHDC2	0	genome.wustl.edu	37	chr1	53362256	53362256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccatgccctctagccggtccCgggttggaatattctgcaac	10	14	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	53362256	53362256	C	T	SNP	ECHDC2	ENST00000371522	human	ensembl	69_37n	-1	known	missense	c.815	p.R272Q	0.691	NULL	pfam_Crotonase_core	-	no_errors	ECHDC2	HGNC	ENSG00000121310	51	0	0	24	10	29.41	-	-	-	T	53362256	C	T	53362256	3	4	891	1	0	0	0	0	1	0	0	0	4929	652	23	1	67	1	ECHDC2	1	53362256	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5711540	53362256	195888365	16	72252										
C1orf123	0	genome.wustl.edu	37	chr1	53681666	53681668	+	In_Frame_Del	DEL	CTC	CTC	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcccccaagtctcataccttCtcctgcagattaatgtcact							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	53681666	53681668	CTC	-	DEL	C1orf123	ENST00000294360	human	ensembl	69_37n	-1	known	in_frame_del	c.402_400	p.E134in_frame_del	0.991:1.000:1.000	pfam_DUF866_euk	pfam_DUF866_euk	-	no_errors	C1orf123	HGNC	ENSG00000162384	83	0	0	44	6	12	-	-	-	-	53681668	CTC	-	53681666	7	5	891	1	0	1	0	1	0	0	0	0	2010	912	32	0	88	0	C1orf123	1	53681666	In_Frame_Del	DEL	CTC	TCGA-EW-A1IZ-01A-11D-A188-09	319410	53681666	195568955	17	72253										
RBMXL1	0	genome.wustl.edu	37	chr1	89448795	89448795	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atcacggtaagtataatctcGtggtggtggtgcataatctc	11	7	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	89448795	89448795	G	A	SNP	RBMXL1	ENST00000321792	human	ensembl	69_37n	-1	known	nonsense	c.715	p.R239*	0.993	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	128	0	0	53	12	18.46	-	-	-	A	89448795	G	A	89448795	4	1	891	1	0	0	0	0	0	1	0	0	13236	1153	40	1	461	1	RBMXL1	1	89448795	Nonsense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	35767129	89448795	159801826	18	72254										
ALG14	0	genome.wustl.edu	37	chr1	95492695	95492695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcttacttaccaaatctggcTtcaccctgtgaattagggga	8	10	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	95492695	95492695	T	G	SNP	ALG14	ENST00000370205	human	ensembl	69_37n	-1	known	missense	c.410	p.K137T	1.000	pfam_Oligosacch_biosynth_Alg14	pfam_Oligosacch_biosynth_Alg14	-	no_errors	ALG14	HGNC	ENSG00000172339	39	0	0	36	4	10	-	-	-	G	95492695	T	G	95492695	3	3	891	1	0	0	0	0	1	0	0	0	516	1609	56	5	248	5	ALG14	1	95492695	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	6043900	95492695	153757926	19	72255										
AMY2B	0	genome.wustl.edu	37	chr1	104117917	104117917	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtggataaccatgacaatcaAcgaggacatggggctggagg	15	7	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	104117917	104117917	A	G	SNP	AMY2B	ENST00000361355	human	ensembl	69_37n	1	known	silent	c.951	p.Q317	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	161	0	0	84	13	13.4	-	-	-	G	104117917	A	G	104117917	2	3	891	1	0	0	0	0	0	0	0	1	595	40	2	5		5	AMY2B	1	104117917	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	8625222	104117917	145132704	20	72256										
SV2A	0	genome.wustl.edu	37	chr1	149884981	149884981	+	Frame_Shift_Del	DEL	C	C	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttctttccgtcgttgtgcctCcccccggcccccagggggac							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	149884981	149884981	C	-	DEL	SV2A	ENST00000369146	human	ensembl	69_37n	-1	known	frame_shift_del	c.412	p.E138fs	0.998	tigrfam_SV2_chordata	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2A	HGNC	ENSG00000159164	26	0	0	17	5	22.73	-	-	-	-	149884981	C	-	149884981	7	5	891	1	0	1	0	1	0	0	0	0	15508	864	30	0	1864	0	SV2A	1	149884981	Frame_Shift_Del	DEL	C	TCGA-EW-A1IZ-01A-11D-A188-09	45767064	149884981	99365640	21	72257										
SSR2	0	genome.wustl.edu	37	chr1	155984778	155984778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gggcccatcctcctgggccaGgtaagtaattgttgccgagg	14	11	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	155984778	155984778	G	T	SNP	SSR2	ENST00000295702	human	ensembl	69_37n	-1	known	missense	c.337	p.L113M	1.000	pfam_TRAP_beta,pirsf_TRAP_beta	pfam_TRAP_beta,pirsf_TRAP_beta	-	no_errors	SSR2	HGNC	ENSG00000163479	59	0	0	43	6	12.24	-	-	-	T	155984778	G	T	155984778	3	4	891	1	0	0	0	0	1	0	0	0	15282	991	35	4	226	4	SSR2	1	155984778	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	6099797	155984778	93265843	22	72258										
MEF2D	0	genome.wustl.edu	37	chr1	156446980	156446980	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gccaggggaagcccgagcacTgacgtagccattccctggag	14	13	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	156446980	156446980	T	C	SNP	MEF2D	ENST00000348159	human	ensembl	69_37n	-1	known	missense	c.679	p.S227G	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604	41	0	0	29	9	23.68	-	-	-	C	156446980	T	C	156446980	3	2	891	1	0	0	0	0	1	0	0	0	9529	1580	55	5	910	5	MEF2D	1	156446980	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	462202	156446980	92803641	23	72259										
TIPRL	0	genome.wustl.edu	37	chr1	168168159	168168159	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtttatttttaaatacaggcTgacaagacctacatgttacg	7	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	168168159	168168159	T	C	SNP	TIPRL	ENST00000367833	human	ensembl	69_37n	1	known	silent	c.615	p.A205	0.921	pfam_TIP41-like	pfam_TIP41-like	-	no_errors	TIPRL	HGNC	ENSG00000143155	53	0	0	40	6	13.04	-	-	-	C	168168159	T	C	168168159	2	2	891	1	0	0	0	0	0	0	0	1	16021	1567	55	5		5	TIPRL	1	168168159	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	11721179	168168159	81082462	24	72260										
CEP350	0	genome.wustl.edu	37	chr1	179959671	179959671	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	attgaaaataaattagaagtAgcccctacaagtacagctgt	7	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	179959671	179959671	A	G	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	silent	c.150	p.V50	0.998	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	40	0	0	43	5	10.42	-	-	-	G	179959671	A	G	179959671	2	3	891	1	0	0	0	0	0	0	0	1	3283	407	15	5		5	CEP350	1	179959671	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	11791512	179959671	69290950	25	72261										
CACNA1E	0	genome.wustl.edu	37	chr1	181690990	181690990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtctgccatctacttcattGtgctcaccttgtttggcaac	8	12	4	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	181690990	181690990	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.2053	p.V685M	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	70	0	0	38	9	19.15	-	-	-	A	181690990	G	A	181690990	3	1	891	1	0	0	0	0	1	0	0	0	2567	1377	48	4	2115	4	CACNA1E	1	181690990	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1731319	181690990	67559631	26	72262										
ZBTB41	0	genome.wustl.edu	37	chr1	197169434	197169437	+	Frame_Shift_Del	DEL	GAGG	GAGG	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaagctttctctgatctggaGagggaggaagttcctggtaa							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	GAGG	GAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	197169434	197169437	GAGG	-	DEL	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	frame_shift_del	c.170_167	p.P56fs	0.998:1.000:0.998:1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	39	0	0	28	6	17.65	-	-	-	-	197169437	GAGG	-	197169434	7	5	891	1	0	1	0	1	0	0	0	0	17639	942	33	0	2599	0	ZBTB41	1	197169434	Frame_Shift_Del	DEL	GAGG	TCGA-EW-A1IZ-01A-11D-A188-09	15478444	197169434	52081187	27	72263										
CENPF	0	genome.wustl.edu	37	chr1	214814654	214814654	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tccttaaatcaagagaagatGaacttaatccagaaaagtga	7	6	1	5			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	214814654	214814654	G	A	SNP	CENPF	ENST00000366955	human	ensembl	69_37n	1	known	missense	c.2973	p.M991I	0.130	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_Centromere_CenpF_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	23	0	0	25	6	19.35	-	-	-	A	214814654	G	A	214814654	3	1	891	1	0	0	0	0	1	0	0	0	3260	1290	45	2	3015	2	CENPF	1	214814654	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	17645220	214814654	34435967	28	72264										
KCNK2	0	genome.wustl.edu	37	chr1	215342695	215342695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aattgccaaagtggaagataCgtttattgtgagtatgatag	11	3	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	215342695	215342695	C	T	SNP	KCNK2	ENST00000444842	human	ensembl	69_37n	1	known	missense	c.629	p.T210M	0.997	prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl_TRAAK	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482	80	0	0	48	14	22.58	-	-	-	T	215342695	C	T	215342695	3	4	891	1	0	0	0	0	1	0	0	0	8120	536	19	1	686	1	KCNK2	1	215342695	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	528041	215342695	33907926	29	72265										
CAPN2	0	genome.wustl.edu	37	chr1	223934727	223934727	+	Frame_Shift_Del	DEL	G	G	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gatgctatgaagcgctatcaGggggtgccaccactgagggc							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	223934727	223934727	G	-	DEL	CAPN2	ENST00000295006	human	ensembl	69_37n	1	known	frame_shift_del	c.589	p.G198fs	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	51	0	0	20	6	23.08	-	-	-	-	223934727	G	-	223934727	7	5	891	1	0	1	0	1	0	0	0	0	2652	1000	35	0	614	0	CAPN2	1	223934727	Frame_Shift_Del	DEL	G	TCGA-EW-A1IZ-01A-11D-A188-09	8592032	223934727	25315894	30	72266										
CNIH3	0	genome.wustl.edu	37	chr1	224872505	224872505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcatcctgatagagggaacGgttgaggaacatcgagcgca	14	8	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	224872505	224872505	G	A	SNP	CNIH3	ENST00000272133	human	ensembl	69_37n	1	known	missense	c.158	p.R53Q	1.000	NULL	pfam_Cornichon	-	no_errors	CNIH3	HGNC	ENSG00000143786	125	0	0	44	9	16.98	-	-	-	A	224872505	G	A	224872505	3	1	891	1	0	0	0	0	1	0	0	0	3634	1116	39	1	168	1	CNIH3	1	224872505	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	937778	224872505	24378116	31	72267										
HIST3H3	0	genome.wustl.edu	37	chr1	228612752	228612752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actcgcacgcctcctgcagcGccatcacggccgagctctgg	11	18	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	228612752	228612752	G	A	SNP	HIST3H3	ENST00000366696	human	ensembl	69_37n	-1	known	missense	c.275	p.A92V	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST3H3	HGNC	ENSG00000168148	46	0	0	28	5	15.15	-	-	-	A	228612752	G	A	228612752	3	1	891	1	0	0	0	0	1	0	0	0	7235	1087	38	1	139	1	HIST3H3	1	228612752	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3740247	228612752	20637869	32	72268										
OR2T11	0	genome.wustl.edu	37	chr1	248790131	248790131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaccaatcatggtcaggtagAggaagatctggatgccacag	12	8	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	1	248790131	248790131	A	G	SNP	OR2T11	ENST00000330803	human	ensembl	69_37n	-1	known	missense	c.299	p.L100P	0.015	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130	24	0	0	15	9	37.5	-	-	-	G	248790131	A	G	248790131	3	3	891	1	0	0	0	0	1	0	0	0	11091	304	11	5	655	5	OR2T11	1	248790131	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	20177379	248790131	460490	33	72269										
SNTG2	0	genome.wustl.edu	37	chr2	1312322	1312322	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctgtgtttcacggtggatttCgcgttgggatttacctgttt	12	7	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	1312322	1312322	C	T	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	1	known	silent	c.1341	p.F447	0.993	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	70	0	0	60	9	13.04	-	-	-	T	1312322	C	T	1312322	2	4	891	1	0	0	0	0	0	0	0	1	14964	883	31	1		1	SNTG2	2	1312322	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		1312322	241887051	34	72270										
KLF11	0	genome.wustl.edu	37	chr2	10188309	10188309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gatttctgtctctgtccctgCtccccctgtcctttgccaga	7	16	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	10188309	10188309	C	T	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	1	known	missense	c.845	p.A282V	0.820	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	124	0	0	46	6	11.54	-	-	-	T	10188309	C	T	10188309	3	4	891	1	0	0	0	0	1	0	0	0	8392	797	28	4	855	4	KLF11	2	10188309	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	8875987	10188309	233011064	35	72271										
APOB	0	genome.wustl.edu	37	chr2	21233643	21233643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agcatcaatgatattgatggGctcactgagtaaaagtggca	11	6	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	21233643	21233643	G	A	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.6097	p.P2033S	0.088	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	74	0	0	42	7	14.29	-	-	-	A	21233643	G	A	21233643	3	1	891	1	0	0	0	0	1	0	0	0	787	1203	42	4	7610	4	APOB	2	21233643	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11045334	21233643	221965730	36	72272										
ASPRV1	0	genome.wustl.edu	37	chr2	70188297	70188297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtggctgggggcagccccaGggaccccaaaggccttcagg	17	13	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	70188297	70188297	G	A	SNP	ASPRV1	ENST00000320256	human	ensembl	69_37n	-1	known	missense	c.524	p.P175L	0.003	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,pfscan_Peptidase_A2_cat	-	no_errors	ASPRV1	HGNC	ENSG00000244617	32	0	0	35	8	18.6	-	-	-	A	70188297	G	A	70188297	3	1	891	1	0	0	0	0	1	0	0	0	1062	1000	35	4	511	4	ASPRV1	2	70188297	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	48954654	70188297	173011076	37	72273										
ADD2	0	genome.wustl.edu	37	chr2	70905920	70905920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	taggtgttgggcgtattgagCcagcgggtcttctccttctg	14	9	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	70905920	70905920	C	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.1299	p.W433C	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	59	0	0	27	6	18.18	-	-	-	A	70905920	C	A	70905920	3	1	891	1	0	0	0	0	1	0	0	0	305	740	26	4	1082	4	ADD2	2	70905920	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	717623	70905920	172293453	38	72274										
ADD2	0	genome.wustl.edu	37	chr2	70906014	70906014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acacgaaggctgtgaccgtgGctggaatctccacctcactt	10	13	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	70906014	70906014	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.1205	p.A402V	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	91	0	0	36	10	21.74	-	-	-	A	70906014	G	A	70906014	3	1	891	1	0	0	0	0	1	0	0	0	305	1203	42	4	1176	4	ADD2	2	70906014	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	94	70906014	172293359	39	72275										
TET3	0	genome.wustl.edu	37	chr2	74275076	74275076	+	Frame_Shift_Del	DEL	C	C	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cctccagggacagcctgctgCcccctactcaggaaatgagg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	74275076	74275076	C	-	DEL	TET3	ENST00000409262	human	ensembl	69_37n	1	known	frame_shift_del	c.1627	p.P544fs	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	20	0	0	10	5	31.25	-	-	-	-	74275076	C	-	74275076	7	5	891	1	0	1	0	1	0	0	0	0	15866	739	26	0	1629	0	TET3	2	74275076	Frame_Shift_Del	DEL	C	TCGA-EW-A1IZ-01A-11D-A188-09	3369062	74275076	168924297	40	72276										
GNLY	0	genome.wustl.edu	37	chr2	85922455	85922455	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttcctcaggtctggtcttctCtcgtctgagccctgagtact	9	13	5	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	85922455	85922455	C	T	SNP	GNLY	ENST00000263863	human	ensembl	69_37n	1	known	missense	c.65	p.S22F	0.288	NULL	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	GNLY	HGNC	ENSG00000115523	56	0	0	29	5	14.71	-	-	-	T	85922455	C	T	85922455	3	4	891	1	0	0	0	0	1	0	0	0	6591	913	32	2	82	2	GNLY	2	85922455	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	11647379	85922455	157276918	41	72277										
SLC9A2	0	genome.wustl.edu	37	chr2	103321037	103321037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cagacacagtctgacagccgAcacaagtgagagacaagcca	10	12	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	103321037	103321037	A	G	SNP	SLC9A2	ENST00000233969	human	ensembl	69_37n	1	known	missense	c.1880	p.D627G	1.000	prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	60	0	0	29	8	21.62	-	-	-	G	103321037	A	G	103321037	3	3	891	1	0	0	0	0	1	0	0	0	14801	275	10	5	1918	5	SLC9A2	2	103321037	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	17398582	103321037	139878336	42	72278										
CCDC138	0	genome.wustl.edu	37	chr2	109432417	109432417	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtaccacttaatgggcaagtTtatgaacttttaactgtctt	7	7	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	109432417	109432417	T	C	SNP	CCDC138	ENST00000456512	human	ensembl	69_37n	1	novel	missense	c.752	p.F251S	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	CCDC138	HGNC	ENSG00000163006	64	0	0	46	10	17.86	-	-	-	C	109432417	T	C	109432417	3	2	891	1	0	0	0	0	1	0	0	0	2797	1828	64	5	1100	5	CCDC138	2	109432417	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	6111380	109432417	133766956	43	72279										
C2orf76	0	genome.wustl.edu	37	chr2	120060116	120060116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acagaagaatgcaatttcagTttcactggctgaaaaaaaac	7	7	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	120060116	120060116	T	C	SNP	C2orf76	ENST00000334816	human	ensembl	69_37n	-1	known	missense	c.313	p.T105A	1.000	pfam_UPF0538	pfam_UPF0538	-	no_errors	C2orf76	HGNC	ENSG00000186132	67	0	0	57	8	12.31	-	-	-	C	120060116	T	C	120060116	3	2	891	1	0	0	0	0	1	0	0	0	2213	1725	60	5	71	5	C2orf76	2	120060116	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	10627699	120060116	123139257	44	72280										
LRP1B	0	genome.wustl.edu	37	chr2	141607771	141607771	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaacgttcctcagatgcatcGaagtctatcacagtaacgtc	7	11	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	141607771	141607771	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.4839	p.F1613	0.570	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	106	0	0	63	15	19.23	-	-	-	A	141607771	G	A	141607771	2	1	891	1	0	0	0	0	0	0	0	1	9021	1049	37	1		1	LRP1B	2	141607771	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	21547655	141607771	101591602	45	72281										
IFIH1	0	genome.wustl.edu	37	chr2	163130328	163130328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaccatggctatttcattggTgacgagaccataacggataa	10	8	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	163130328	163130328	T	C	SNP	IFIH1	ENST00000263642	human	ensembl	69_37n	-1	known	missense	c.2431	p.T811A	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_DEATH-like,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267	108	0	0	68	11	13.58	-	-	-	C	163130328	T	C	163130328	3	2	891	1	0	0	0	0	1	0	0	0	7574	1696	59	5	666	5	IFIH1	2	163130328	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	21522557	163130328	80069045	46	72282										
HOXD8	0	genome.wustl.edu	37	chr2	176996277	176996277	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcccggcaggaggtgaaggaCggggaaacgaaaaaggaagc	17	7	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	176996277	176996277	C	T	SNP	HOXD8	ENST00000313173	human	ensembl	69_37n	1	known	silent	c.810	p.D270	0.972	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD8	HGNC	ENSG00000175879	34	0	0	23	7	23.33	-	-	-	T	176996277	C	T	176996277	2	4	891	1	0	0	0	0	0	0	0	1	7376	535	19	1		1	HOXD8	2	176996277	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	13865949	176996277	66203096	47	72283										
CWC22	0	genome.wustl.edu	37	chr2	180809917	180809917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gatttttctttgattctctgGattgttcagagtatctgcta	8	6	4	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	180809917	180809917	G	A	SNP	CWC22	ENST00000295749	human	ensembl	69_37n	-1	known	missense	c.2666	p.S889F	0.980	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	108	0	0	59	13	18.06	-	-	-	A	180809917	G	A	180809917	3	1	891	1	0	0	0	0	1	0	0	0	4099	1174	41	2	64	2	CWC22	2	180809917	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3813640	180809917	62389456	48	72284										
FRZB	0	genome.wustl.edu	37	chr2	183703303	183703303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cactactgcagtcacatcatGgcacttagtctttatctctt	5	12	4	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	183703303	183703303	G	A	SNP	FRZB	ENST00000295113	human	ensembl	69_37n	-1	known	missense	c.631	p.H211Y	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998	46	0	0	43	8	15.69	-	-	-	A	183703303	G	A	183703303	3	1	891	1	0	0	0	0	1	0	0	0	6114	1348	47	4	358	4	FRZB	2	183703303	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2893386	183703303	59496070	49	72285										
ORMDL1	0	genome.wustl.edu	37	chr2	190647159	190647159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aattcttaccagattatgtaTaatatttgttaaagtccaag	5	5	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	2	190647159	190647159	T	C	SNP	ORMDL1	ENST00000325795	human	ensembl	69_37n	-1	known	missense	c.163	p.I55V	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL1	HGNC	ENSG00000128699	36	0	0	24	7	22.58	-	-	-	C	190647159	T	C	190647159	3	2	891	1	0	0	0	0	1	0	0	0	11342	1406	49	5	310	5	ORMDL1	2	190647159	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	6943856	190647159	52552214	50	72286										
LRRN1	0	genome.wustl.edu	37	chr3	3886447	3886447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actttgcgtatgtgaaattcGtccctggtttaccccacagt	8	11	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	3886447	3886447	G	A	SNP	LRRN1	ENST00000319331	human	ensembl	69_37n	1	known	missense	c.122	p.R41H	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN1	HGNC	ENSG00000175928	45	0	0	38	7	15.56	-	-	-	A	3886447	G	A	3886447	3	1	891	1	0	0	0	0	1	0	0	0	9100	1145	40	1	124	1	LRRN1	3	3886447	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		3886447	194135983	51	72287										
PPARG	0	genome.wustl.edu	37	chr3	12421355	12421355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcatttctactccacattacGaagacattccattcacaaga	4	12	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	12421355	12421355	G	A	SNP	PPARG	ENST00000287820	human	ensembl	69_37n	1	known	missense	c.235	p.E79K	1.000	pfam_PPARgamma_N	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	57	0	0	56	13	18.84	-	-	-	A	12421355	G	A	12421355	3	1	891	1	0	0	0	0	1	0	0	0	12372	1059	37	1	241	1	PPARG	3	12421355	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	8534908	12421355	185601075	52	72288										
FGD5	0	genome.wustl.edu	37	chr3	14964007	14964007	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atgtgcatgaactgcggctgCgacttctccctcaccctgcg	10	15	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	14964007	14964007	C	T	SNP	FGD5	ENST00000285046	human	ensembl	69_37n	1	known	silent	c.3759	p.C1253	0.853	pfam_Znf_FYVE,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	31	0	0	8	5	38.46	-	-	-	T	14964007	C	T	14964007	2	4	891	1	0	0	0	0	0	0	0	1	5882	776	27	1		1	FGD5	3	14964007	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2542652	14964007	183058423	53	72289										
TGFBR2	0	genome.wustl.edu	37	chr3	30713659	30713659	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggctgatcaccgccttccaCgccaagggcaacctacagga	10	15	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	30713659	30713659	C	T	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	1	known	silent	c.1059	p.H353	0.166	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	19	0	0	15	5	25	-	-	-	T	30713659	C	T	30713659	2	4	891	1	0	0	0	0	0	0	0	1	15917	535	19	1		1	TGFBR2	3	30713659	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	15749652	30713659	167308771	54	72290										
TRANK1	0	genome.wustl.edu	37	chr3	36896783	36896783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagagcgcagatcgctgaagCggaaggccacgcccttcatg	14	12	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	36896783	36896783	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.4298	p.R1433H	1.000	pfam_UvrD-like_ATP-bd	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	36	0	0	13	5	27.78	-	-	-	T	36896783	C	T	36896783	3	4	891	1	0	0	0	0	1	0	0	0	16550	768	27	1	4527	1	TRANK1	3	36896783	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6183124	36896783	161125647	55	72291										
DALRD3	0	genome.wustl.edu	37	chr3	49055971	49055971	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttgagggcccccagcgtctcCccgaccccaaggcgcctggt	12	18	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	49055971	49055971	C	T	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	silent	c.27	p.G9	1.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	12	0	0	8	5	38.46	-	-	-	T	49055971	C	T	49055971	2	4	891	1	0	0	0	0	0	0	0	1	4261	610	22	4		4	DALRD3	3	49055971	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	12159188	49055971	148966459	56	72292										
VPRBP	0	genome.wustl.edu	37	chr3	51452257	51452257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gttcctcttgtagttgttggCaagatctgggttaaacagag	12	6	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	51452257	51452257	C	T	SNP	VPRBP	ENST00000335891	human	ensembl	69_37n	-1	known	missense	c.2311	p.A771T	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	63	0	0	27	8	22.86	-	-	-	T	51452257	C	T	51452257	3	4	891	1	0	0	0	0	1	0	0	0	17282	710	25	4	893	4	VPRBP	3	51452257	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2396286	51452257	146570173	57	72293										
ADCY5	0	genome.wustl.edu	37	chr3	123022988	123022988	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtgctgttcatcttggaccGcacgatcttcctggagaggg	14	10	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	123022988	123022988	G	T	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	silent	c.2485	p.R829	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	14	0	0	13	4	23.53	-	-	-	T	123022988	G	T	123022988	2	4	891	1	0	0	0	0	0	0	0	1	297	1086	38	3		3	ADCY5	3	123022988	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	71570731	123022988	74999442	58	72294										
KBTBD12	0	genome.wustl.edu	37	chr3	127642256	127642257	+	Frame_Shift_Ins	INS	-	-	GT													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcagatggaagaagtcttcaINSgtgtgtgtcaaaaatatatg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	127642256	127642257	-	GT	INS	KBTBD12	ENST00000405109	human	ensembl	69_37n	1	known	frame_shift_ins	c.352_353	p.Q121fs	0.000:0.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	19	0	0	22	6	21.43	-	-	-	GT	127642257	-	GT	127642256	7	5	891	1	0	1	1	0	0	0	0	0	8045	188	7	0	354	0	KBTBD12	3	127642256	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	4619268	127642256	70380174	59	72295										
MBD4	0	genome.wustl.edu	37	chr3	129158619	129158619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	taggcgctcactagaggtgaCggtgggggcagctccgcggt	18	10	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	129158619	129158619	C	T	SNP	MBD4	ENST00000249910	human	ensembl	69_37n	-1	known	missense	c.58	p.V20I	0.000	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_integrase-typ,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071	23	0	0	15	4	21.05	-	-	-	T	129158619	C	T	129158619	3	4	891	1	0	0	0	0	1	0	0	0	9417	536	19	1	1716	1	MBD4	3	129158619	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	1516363	129158619	68863811	60	72296										
ASTE1	0	genome.wustl.edu	37	chr3	130743497	130743498	+	Frame_Shift_Del	DEL	AA	AA	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcatttccacatagcaccgcAaagagaggtagtagagcttt							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	130743497	130743498	AA	-	DEL	ASTE1	ENST00000264992	human	ensembl	69_37n	-1	known	frame_shift_del	c.654_653	p.F218fs	0.997:1.000	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	30	0	0	28	5	15.15	-	-	-	-	130743498	AA	-	130743497	7	5	891	1	0	1	0	1	0	0	0	0	1066	127	5	0	1401	0	ASTE1	3	130743497	Frame_Shift_Del	DEL	AA	TCGA-EW-A1IZ-01A-11D-A188-09	1584878	130743497	67278933	61	72297										
DBR1	0	genome.wustl.edu	37	chr3	137880738	137880739	+	In_Frame_Ins	INS	-	-	CAT													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aagtaaatcatcttaagctgINScatcgtcatcatcatcatcc							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	137880738	137880739	-	CAT	INS	DBR1	ENST00000260803	human	ensembl	69_37n	-1	known	in_frame_ins	c.1628_1627	p.543in_frame_insD	0.000:0.038	NULL	pfam_DBR1_C,pfam_Metallo_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231	117	0	0	44	7	13.73	-	-	-	CAT	137880739	-	CAT	137880738	7	5	891	1	0	1	1	0	0	0	0	0	4289	1319	46	0	10	0	DBR1	3	137880738	In_Frame_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	7137241	137880738	60141692	62	72298										
MED12L	0	genome.wustl.edu	37	chr3	151095876	151095876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cttctgtgcaaggaagagtgCtgaaagccgctggggaagag	16	7	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	151095876	151095876	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	silent	c.4288	p.L1430	0.415	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	52	0	0	30	6	16.67	-	-	-	T	151095876	C	T	151095876	2	4	891	1	0	0	0	0	0	0	0	1	9500	796	28	4		4	MED12L	3	151095876	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	13215138	151095876	46926554	63	72299										
MED12L	0	genome.wustl.edu	37	chr3	151100490	151100490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ataccaagatgacataaaagCgcggcagatgatgcacgaag	11	8	0	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	151100490	151100490	C	T	SNP	MED12L	ENST00000474524	human	ensembl	69_37n	1	known	missense	c.4532	p.A1511V	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	57	0	0	30	6	16.67	-	-	-	T	151100490	C	T	151100490	3	4	891	1	0	0	0	0	1	0	0	0	9500	768	27	1	4654	1	MED12L	3	151100490	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4614	151100490	46921940	64	72300										
PIK3CA	0	genome.wustl.edu	37	chr3	178938775	178938775	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttttgcacgattcttttagaTctgagatgcacaataaaaca	6	7	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	178938775	178938775	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2017	p.S673T	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	66	0	0	51	9	15	-	-	-	A	178938775	T	A	178938775	3	1	891	1	0	0	0	0	1	0	0	0	11987	1449	50	5	2067	5	PIK3CA	3	178938775	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	27838285	178938775	19083655	65	72301										
CLCN2	0	genome.wustl.edu	37	chr3	184072690	184072690	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagcaggcagctgagaactcAccaatgacaaagacaggcat	11	10	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	3	184072690	184072690	A	G	SNP	CLCN2	ENST00000265593	human	ensembl	69_37n	-1	known	splice_site	c.1396+2	e13+2	1.000	-	-	-	no_errors	CLCN2	HGNC	ENSG00000114859	27	0	0	16	7	30.43	-	-	-	G	184072690	A	G	184072690	5	3	891	1	0	0	0	0	0	0	1	0	3493	173	6	5	1346	5	CLCN2	3	184072690	Splice_Site	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	5133915	184072690	13949740	66	72302										
PIGG	0	genome.wustl.edu	37	chr4	515734	515734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaaacaccccaaggaaggtaCgtacggctggttcctgggag	14	10	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	515734	515734	C	T	SNP	PIGG	ENST00000509768	human	ensembl	69_37n	1	novel	missense	c.1351	p.R451C	0.489	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227	66	0	0	25	5	16.67	-	-	-	T	515734	C	T	515734	3	4	891	1	0	0	0	0	1	0	0	0	11962	551	19	1		1	PIGG	4	515734	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		515734	190638542	67	72303										
HGFAC	0	genome.wustl.edu	37	chr4	3445881	3445881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gccttcaccggcaaggactgCggcacaggtgagctgggcct	15	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	3445881	3445881	C	T	SNP	HGFAC	ENST00000382774	human	ensembl	69_37n	1	known	silent	c.591	p.C197	0.007	pirsf_Coagulation_fac_XIIa/HGFA,smart_EGF-like,pfscan_EG-like_dom	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	HGFAC	HGNC	ENSG00000109758	9	0	0	9	5	35.71	-	-	-	T	3445881	C	T	3445881	2	4	891	1	0	0	0	0	0	0	0	1	7137	776	27	1		1	HGFAC	4	3445881	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2930147	3445881	187708395	68	72304										
EVC	0	genome.wustl.edu	37	chr4	5721019	5721019	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aagaatttggagtctaatgcGcagaccccctcggaaactgg	11	10	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	5721019	5721019	G	A	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	silent	c.219	p.A73	0.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	82	0	0	48	12	20	-	-	-	A	5721019	G	A	5721019	2	1	891	1	0	0	0	0	0	0	0	1	5322	1074	38	1		1	EVC	4	5721019	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2275138	5721019	185433257	69	72305										
EVC	0	genome.wustl.edu	37	chr4	5795342	5795342	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtcccgagttcaggtgtggaTggaggagtgtgcgctgtcca	17	8	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	5795342	5795342	T	C	SNP	EVC	ENST00000264956	human	ensembl	69_37n	1	known	missense	c.1784	p.M595T	1.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840	26	0	0	16	5	23.81	-	-	-	C	5795342	T	C	5795342	3	2	891	1	0	0	0	0	1	0	0	0	5322	1464	51	5	1834	5	EVC	4	5795342	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	74323	5795342	185358934	70	72306										
LDB2	0	genome.wustl.edu	37	chr4	16899985	16899985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgaagtacttacctctgtgcGagactgcagtctcttgttca	9	10	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	16899985	16899985	G	A	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.124	p.R42C	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	44	0	0	35	6	14.63	-	-	-	A	16899985	G	A	16899985	3	1	891	1	0	0	0	0	1	0	0	0	8750	1058	37	1	1138	1	LDB2	4	16899985	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11104643	16899985	174254291	71	72307										
GBA3	0	genome.wustl.edu	37	chr4	22749085	22749085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tatgctcagttttgcttcagTacctttggggatcgtgtcaa	10	8	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	22749085	22749085	T	C	SNP	GBA3	ENST00000508166	human	ensembl	69_37n	1	known	silent	c.453	p.S151	0.000	NULL	NULL	-	pseudogene	GBA3	HGNC	ENSG00000249948	72	0	0	37	6	13.95	-	-	-	C	22749085	T	C	22749085	2	2	891	1	0	0	0	0	0	0	0	1	6318	1635	57	5		5	GBA3	4	22749085	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	5849100	22749085	168405191	72	72308										
SHISA3	0	genome.wustl.edu	37	chr4	42403144	42403144	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agacccaaggagccctcgcaGcagccaatccgcttctcact	8	17	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	42403144	42403144	G	A	SNP	SHISA3	ENST00000319234	human	ensembl	69_37n	1	known	silent	c.393	p.Q131	1.000	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343	113	0	0	43	9	17.31	-	-	-	A	42403144	G	A	42403144	2	1	891	1	0	0	0	0	0	0	0	1	14370	962	34	4		4	SHISA3	4	42403144	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	19654059	42403144	148751132	73	72309										
PPAT	0	genome.wustl.edu	37	chr4	57268337	57268337	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acccatccttctgtttctgaTgtttttttctctgtaaatca	4	10	4	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	57268337	57268337	T	C	SNP	PPAT	ENST00000264220	human	ensembl	69_37n	-1	known	silent	c.672	p.T224	0.001	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	102	0	0	63	17	21.25	-	-	-	C	57268337	T	C	57268337	2	2	891	1	0	0	0	0	0	0	0	1	12375	1451	51	5		5	PPAT	4	57268337	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	14865193	57268337	133885939	74	72310										
UBA6	0	genome.wustl.edu	37	chr4	68528872	68528872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	attacccaacatttggcttgCgactgtatttctcctgaaac	6	11	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	68528872	68528872	C	T	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.1022	p.R341H	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	58	0	0	38	5	11.36	-	-	-	T	68528872	C	T	68528872	3	4	891	1	0	0	0	0	1	0	0	0	16929	768	27	1	2224	1	UBA6	4	68528872	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	11260535	68528872	122625404	75	72311										
LIN54	0	genome.wustl.edu	37	chr4	83891570	83891570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccaataacaccactttcagaTattgttatggtctttgatgg	7	8	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	83891570	83891570	T	C	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.861	p.I287M	0.994	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	94	0	0	79	14	15.05	-	-	-	C	83891570	T	C	83891570	3	2	891	1	0	0	0	0	1	0	0	0	8865	1396	49	5	1428	5	LIN54	4	83891570	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	15362698	83891570	107262706	76	72312										
WDFY3	0	genome.wustl.edu	37	chr4	85654705	85654705	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cagcccccgctccctcaacaGctcgcactcgatctgacacc	6	21	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	85654705	85654705	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.7051	p.L2351	1.000	superfamily_Cyclin-like	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	31	0	0	28	6	17.65	-	-	-	A	85654705	G	A	85654705	2	1	891	1	0	0	0	0	0	0	0	1	17367	962	34	4		4	WDFY3	4	85654705	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1763135	85654705	105499571	77	72313										
PPP3CA	0	genome.wustl.edu	37	chr4	102004357	102004357	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gctcaccctgcatcttgggcTtcgtgggctcggagtataga	13	11	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	102004357	102004357	T	G	SNP	PPP3CA	ENST00000394854	human	ensembl	69_37n	-1	known	missense	c.846	p.E282D	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	57	0	0	31	5	13.89	-	-	-	G	102004357	T	G	102004357	3	3	891	1	0	0	0	0	1	0	0	0	12474	1606	56	5	751	5	PPP3CA	4	102004357	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	16349652	102004357	89149919	78	72314										
IL15	0	genome.wustl.edu	37	chr4	142651103	142651103	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgatacagtagaaaatctgaTcatcctagcaaacaacagtt	6	8	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	142651103	142651103	T	A	SNP	IL15	ENST00000296545	human	ensembl	69_37n	1	known	missense	c.344	p.I115N	0.899	pfam_Interleukin_15-like	pfam_Interleukin_15-like,prints_Interleukin-15_mammal,prints_Interleukin-15	-	no_errors	IL15	HGNC	ENSG00000164136	69	0	0	41	10	19.61	-	-	-	A	142651103	T	A	142651103	3	1	891	1	0	0	0	0	1	0	0	0	7685	1435	50	5	362	5	IL15	4	142651103	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	40646746	142651103	48503173	79	72315										
ODZ3	0	genome.wustl.edu	37	chr4	183676017	183676017	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atccggatccgggctgtgtcAaagaataagcctttacttaa	9	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	183676017	183676017	A	G	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	silent	c.4497	p.S1499	0.007	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	46	0	0	32	5	13.51	-	-	-	G	183676017	A	G	183676017	2	3	891	1	0	0	0	0	0	0	0	1	10909	117	5	5		5	ODZ3	4	183676017	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	41024914	183676017	7478259	80	72316										
CCDC110	0	genome.wustl.edu	37	chr4	186382306	186382306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcaatatttcactgatttccGactgtacctttaaaagataa	4	8	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	4	186382306	186382306	G	A	SNP	CCDC110	ENST00000307588	human	ensembl	69_37n	-1	known	missense	c.245	p.S82L	1.000	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491	88	0	0	57	12	17.39	-	-	-	A	186382306	G	A	186382306	3	1	891	1	0	0	0	0	1	0	0	0	2772	1059	37	1	2268	1	CCDC110	4	186382306	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2706289	186382306	4771970	81	72317										
MTMR12	0	genome.wustl.edu	37	chr5	32230235	32230235	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actttgatttcgggcccctcGatatgcggtaacaacaaacc	8	12	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	32230235	32230235	G	A	SNP	MTMR12	ENST00000382142	human	ensembl	69_37n	-1	known	silent	c.1893	p.I631	0.033	pfam_Myotubularin_assoc	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	35	0	0	33	4	10.81	-	-	-	A	32230235	G	A	32230235	2	1	891	1	0	0	0	0	0	0	0	1	10013	1048	37	1		1	MTMR12	5	32230235	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		32230235	148685025	82	72318										
NIPBL	0	genome.wustl.edu	37	chr5	36985782	36985782	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggggtgaatcagagcgacatCgaggggatcagtctagggtt	17	6	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	36985782	36985782	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	nonsense	c.2500	p.R834*	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	33	0	0	39	6	13.04	-	-	-	T	36985782	C	T	36985782	4	4	891	1	0	0	0	0	0	1	0	0	10500	876	31	1	2534	1	NIPBL	5	36985782	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4755547	36985782	143929478	83	72319										
OSMR	0	genome.wustl.edu	37	chr5	38886285	38886285	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aatatcctttttaacctgacTcatcgaggtgagactagagt	8	8	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	38886285	38886285	T	C	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	1	known	silent	c.984	p.T328	0.214	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	53	0	0	30	4	11.76	-	-	-	C	38886285	T	C	38886285	2	2	891	1	0	0	0	0	0	0	0	1	11365	1538	54	5		5	OSMR	5	38886285	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	1900503	38886285	142028975	84	72320										
MOCS2	0	genome.wustl.edu	37	chr5	52402960	52402960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gggggggataacggcaatttCgtctccaggctgaagcacga	15	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	52402960	52402960	C	T	SNP	MOCS2	ENST00000361377	human	ensembl	69_37n	-1	known	missense	c.232	p.E78K	0.998	pfam_ThiS/MoaD,superfamily_Mopterin_synth/thiamin_S_b,tigrfam_Mopterin_su_1	pfam_ThiS/MoaD,superfamily_Mopterin_synth/thiamin_S_b,tigrfam_Mopterin_su_1	-	no_errors	MOCS2	HGNC	ENSG00000164172	37	0	0	34	5	12.82	-	-	-	T	52402960	C	T	52402960	3	4	891	1	0	0	0	0	1	0	0	0	9763	893	31	1	541	1	MOCS2	5	52402960	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	13516675	52402960	128512300	85	72321										
SKIV2L2	0	genome.wustl.edu	37	chr5	54624574	54624574	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caaagagaggccattcagtgTgttgacaataatcagtctgt	10	7	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	54624574	54624574	T	C	SNP	SKIV2L2	ENST00000506750	human	ensembl	69_37n	1	known	missense	c.245	p.V82A	1.000	NULL	NULL	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	106	0	0	85	13	13.27	-	-	-	C	54624574	T	C	54624574	3	2	891	1	0	0	0	0	1	0	0	0	14449	1702	59	5	468	5	SKIV2L2	5	54624574	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	2221614	54624574	126290686	86	72322										
HTR1A	0	genome.wustl.edu	37	chr5	63257403	63257403	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcattgcccagcaccgcgcaGaagatgagcgtgcccagcag	13	14	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	63257403	63257403	G	A	SNP	HTR1A	ENST00000323865	human	ensembl	69_37n	-1	known	silent	c.144	p.F48	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394	33	0	0	25	6	19.35	-	-	-	A	63257403	G	A	63257403	2	1	891	1	0	0	0	0	0	0	0	1	7490	933	33	2		2	HTR1A	5	63257403	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	8632829	63257403	117657857	87	72323										
F2R	0	genome.wustl.edu	37	chr5	76028893	76028893	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tctgctgtcttcttttttgtGccgctgatcatttccacggt	8	11	4	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	76028893	76028893	G	A	SNP	F2R	ENST00000319211	human	ensembl	69_37n	1	known	silent	c.843	p.V281	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	98	0	0	44	9	16.98	-	-	-	A	76028893	G	A	76028893	2	1	891	1	0	0	0	0	0	0	0	1	5380	1306	46	4		4	F2R	5	76028893	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	12771490	76028893	104886367	88	72324										
GPR98	0	genome.wustl.edu	37	chr5	90151694	90151694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	catacaatgaagccttcttcActtctggatttatatgtatc	5	9	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	90151694	90151694	A	G	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.17731	p.T5911A	1.000	pfscan_GPCR_2-like	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	97	0	0	46	13	22.03	-	-	-	G	90151694	A	G	90151694	3	3	891	1	0	0	0	0	1	0	0	0	6772	159	6	5	18057	5	GPR98	5	90151694	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	14122801	90151694	90763566	89	72325										
RFESD	0	genome.wustl.edu	37	chr5	94991896	94991896	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaaggaataaagcaaaggatTcacacagtgacagtagacaa	9	6	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	94991896	94991896	T	A	SNP	RFESD	ENST00000380005	human	ensembl	69_37n	1	known	silent	c.516	p.I172	1.000	superfamily_Rieske_2Fe-2S	pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S	-	no_errors	RFESD	HGNC	ENSG00000175449	46	0	0	42	8	16	-	-	-	A	94991896	T	A	94991896	2	1	891	1	0	0	0	0	0	0	0	1	13332	1771	62	5		5	RFESD	5	94991896	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	4840202	94991896	85923364	90	72326										
ZNF608	0	genome.wustl.edu	37	chr5	123984089	123984089	+	Frame_Shift_Del	DEL	T	T	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gttcattgttaaggcccttcTttttgccagaattcttccca							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	123984089	123984089	T	-	DEL	ZNF608	ENST00000306315	human	ensembl	69_37n	-1	known	frame_shift_del	c.1988	p.K663fs	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	48	0	0	25	4	13.79	-	-	-	-	123984089	T	-	123984089	7	5	891	1	0	1	0	1	0	0	0	0	18130	1609	56	0	2574	0	ZNF608	5	123984089	Frame_Shift_Del	DEL	T	TCGA-EW-A1IZ-01A-11D-A188-09	28992193	123984089	56931171	91	72327										
BRD8	0	genome.wustl.edu	37	chr5	137476347	137476347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcacctttattctcataggcGttctgaaatcaagattccag	6	10	4	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	137476347	137476347	G	A	SNP	BRD8	ENST00000427976	human	ensembl	69_37n	-1	putative	missense	c.980	p.T327M	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon	BRD8	HGNC	ENSG00000112983	35	0	0	27	9	25	-	-	-	A	137476347	G	A	137476347	3	1	891	1	0	0	0	0	1	0	0	0	1514	1160	40	1		1	BRD8	5	137476347	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	13492258	137476347	43438913	92	72328										
PCDHB2	0	genome.wustl.edu	37	chr5	140475245	140475245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccaagcatctgaagacattCgcaaaacgtttcgattaagt	7	10	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	140475245	140475245	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	1	known	missense	c.871	p.R291C	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	30	0	0	33	6	15.38	-	-	-	T	140475245	C	T	140475245	3	4	891	1	0	0	0	0	1	0	0	0	11615	884	31	1	873	1	PCDHB2	5	140475245	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2998898	140475245	40440015	93	72329										
PCDHGB2	0	genome.wustl.edu	37	chr5	140741848	140741848	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggcaatctccctgcgcctgCgactctcttccaggtcagat	9	15	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	140741848	140741848	C	T	SNP	PCDHGB2	ENST00000522605	human	ensembl	69_37n	1	known	nonsense	c.2146	p.R716*	0.005	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910	48	0	0	29	4	12.12	-	-	-	T	140741848	C	T	140741848	4	4	891	1	0	0	0	0	0	1	0	0	11636	760	27	1	2148	1	PCDHGB2	5	140741848	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	266603	140741848	40173412	94	72330										
PCDHGA6	0	genome.wustl.edu	37	chr5	140753950	140753950	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagctctgtgctcagagcccGcggtgtctggtgagttttaa	14	9	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	140753950	140753950	G	A	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	silent	c.300	p.P100	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	37	0	0	23	7	23.33	-	-	-	A	140753950	G	A	140753950	2	1	891	1	0	0	0	0	0	0	0	1	11631	1074	38	1		1	PCDHGA6	5	140753950	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	12102	140753950	40161310	95	72331										
PCDHGA9	0	genome.wustl.edu	37	chr5	140783157	140783157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcccaccacctggtcctcaCggcctcggatggcggcgagc	13	17	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	140783157	140783157	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	1	known	missense	c.638	p.T213M	0.962	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	29	0	0	18	5	21.74	-	-	-	T	140783157	C	T	140783157	3	4	891	1	0	0	0	0	1	0	0	0	11634	536	19	1	640	1	PCDHGA9	5	140783157	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	29207	140783157	40132103	96	72332										
PCDHGC5	0	genome.wustl.edu	37	chr5	140869817	140869817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggagggccactgtgtgattcAagtggatgtgggggatgtca	18	5	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	140869817	140869817	A	G	SNP	PCDHGC5	ENST00000252087	human	ensembl	69_37n	1	known	missense	c.1010	p.Q337R	0.735	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	40	0	0	26	4	13.33	-	-	-	G	140869817	A	G	140869817	3	3	891	1	0	0	0	0	1	0	0	0	11644	130	5	5	1012	5	PCDHGC5	5	140869817	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	86660	140869817	40045443	97	72333										
RNF14	0	genome.wustl.edu	37	chr5	141359789	141359789	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtggtgtactgcccccggccGtgctgccagctgcctgtgat	14	14	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	141359789	141359789	G	A	SNP	RNF14	ENST00000347642	human	ensembl	69_37n	1	known	silent	c.936	p.P312	0.231	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	38	0	0	35	4	10.26	-	-	-	A	141359789	G	A	141359789	2	1	891	1	0	0	0	0	0	0	0	1	13529	1132	40	1		1	RNF14	5	141359789	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	489972	141359789	39555471	98	72334										
LARP1	0	genome.wustl.edu	37	chr5	154170243	154170243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcaatcaattggcccacaccTggagagatagcccacaagag	10	12	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	154170243	154170243	T	C	SNP	LARP1	ENST00000521577	human	ensembl	69_37n	1	known	missense	c.121	p.W41R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LARP1	HGNC	ENSG00000155506	55	0	0	33	5	13.16	-	-	-	C	154170243	T	C	154170243	3	2	891	1	0	0	0	0	1	0	0	0	8682	1567	55	5	316	5	LARP1	5	154170243	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	12810454	154170243	26745017	99	72335										
CYFIP2	0	genome.wustl.edu	37	chr5	156766240	156766240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctttgactttctccccaactActgctacaatgggtccacta	5	14	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	156766240	156766240	A	G	SNP	CYFIP2	ENST00000318218	human	ensembl	69_37n	1	known	missense	c.2636	p.Y879C	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	54	0	0	34	4	10.53	-	-	-	G	156766240	A	G	156766240	3	3	891	1	0	0	0	0	1	0	0	0	4169	391	14	5	2643	5	CYFIP2	5	156766240	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	2595997	156766240	24149020	100	72336										
KCNMB1	0	genome.wustl.edu	37	chr5	169805721	169805721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gatggctctacttctgggccGccaggatggacaggtactgg	15	10	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	5	169805721	169805721	G	A	SNP	KCNMB1	ENST00000274629	human	ensembl	69_37n	-1	known	missense	c.563	p.A188V	0.980	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB1	HGNC	ENSG00000145936	37	0	0	14	6	30	-	-	-	A	169805721	G	A	169805721	3	1	891	1	0	0	0	0	1	0	0	0	8128	1087	38	1	16	1	KCNMB1	5	169805721	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	13039481	169805721	11109539	101	72337										
CDYL	0	genome.wustl.edu	37	chr6	4943948	4943948	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttcggacagagtccagatggCtgttctaccgttatgtttcc	10	10	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	4943948	4943948	C	T	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	silent	c.1452	p.G484	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	73	0	0	34	4	10.53	-	-	-	T	4943948	C	T	4943948	2	4	891	1	0	0	0	0	0	0	0	1	3214	784	28	4		4	CDYL	6	4943948	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		4943948	166171119	102	72338										
SYCP2L	0	genome.wustl.edu	37	chr6	10911066	10911066	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtattttgcagggtgtattcAtttccgtgtattgctgcttt	10	6	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	10911066	10911066	A	G	SNP	SYCP2L	ENST00000283141	human	ensembl	69_37n	1	known	silent	c.882	p.S294	0.997	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	124	0	0	81	13	13.83	-	-	-	G	10911066	A	G	10911066	2	3	891	1	0	0	0	0	0	0	0	1	15525	204	8	5		5	SYCP2L	6	10911066	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	5967118	10911066	160204001	103	72339										
MBOAT1	0	genome.wustl.edu	37	chr6	20152948	20152948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	taccaggacgtaagtagatgCgaaaccagaaagcagcaaac	10	9	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	20152948	20152948	C	T	SNP	MBOAT1	ENST00000324607	human	ensembl	69_37n	-1	known	missense	c.152	p.R51H	1.000	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	75	0	0	35	5	12.5	-	-	-	T	20152948	C	T	20152948	3	4	891	1	0	0	0	0	1	0	0	0	9427	768	27	1	1383	1	MBOAT1	6	20152948	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	9241882	20152948	150962119	104	72340										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043595	26043595	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggcagcagcaggcgcacagcCgtctgaatctccctggaggt	14	13	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	26043595	26043595	C	A	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	silent	c.291	p.T97	0.996	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	42	0	0	26	4	13.33	-	-	-	A	26043595	C	A	26043595	2	1	891	1	0	0	0	0	0	0	0	1	7192	639	23	3		3	HIST1H2BB	6	26043595	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5890647	26043595	145071472	105	72341										
NKAPL	0	genome.wustl.edu	37	chr6	28227370	28227370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcgctctgggtcgcgagggcGgctcccaagattccgcaact	13	14	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	28227370	28227370	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	69_37n	1	known	missense	c.221	p.R74Q	0.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134	19	0	0	7	4	36.36	-	-	-	A	28227370	G	A	28227370	3	1	891	1	0	0	0	0	1	0	0	0	10512	1116	39	1	223	1	NKAPL	6	28227370	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2183775	28227370	142887697	106	72342										
FOXP4	0	genome.wustl.edu	37	chr6	41557781	41557781	+	Frame_Shift_Del	DEL	C	C	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttcccagatggtctcgtgcaCcccccgacctcggccgcagc							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	41557781	41557781	C	-	DEL	FOXP4	ENST00000307972	human	ensembl	69_37n	1	known	frame_shift_del	c.1230	p.P412fs	0.964	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166	25	0	0	13	5	27.78	-	-	-	-	41557781	C	-	41557781	7	5	891	1	0	1	0	1	0	0	0	0	6077	506	18	0	1268	0	FOXP4	6	41557781	Frame_Shift_Del	DEL	C	TCGA-EW-A1IZ-01A-11D-A188-09	13330411	41557781	129557286	107	72343										
TRERF1	0	genome.wustl.edu	37	chr6	42204015	42204015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcctgcaggggcggcccctcCgtgggagccaggacggggac	19	14	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	42204015	42204015	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.3054	p.T1018	0.003	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	87	0	0	43	8	15.69	-	-	-	T	42204015	C	T	42204015	2	4	891	1	0	0	0	0	0	0	0	1	16571	639	23	1		1	TRERF1	6	42204015	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	646234	42204015	128911052	108	72344										
RUNX2	0	genome.wustl.edu	37	chr6	45399682	45399682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaattattctgctgagctccGgaatgcctctgctgttatga	9	9	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	45399682	45399682	G	A	SNP	RUNX2	ENST00000352853	human	ensembl	69_37n	1	known	missense	c.710	p.R237Q	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	80	0	0	42	5	10.64	-	-	-	A	45399682	G	A	45399682	3	1	891	1	0	0	0	0	1	0	0	0	13834	1116	39	1	532	1	RUNX2	6	45399682	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3195667	45399682	125715385	109	72345										
ELOVL4	0	genome.wustl.edu	37	chr6	80656915	80656915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acctgcgatggaccaggtccAgcggtagaactctaccgtgt	12	12	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	80656915	80656915	A	G	SNP	ELOVL4	ENST00000369816	human	ensembl	69_37n	-1	known	missense	c.82	p.W28R	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402	38	0	0	19	7	26.92	-	-	-	G	80656915	A	G	80656915	3	3	891	1	0	0	0	0	1	0	0	0	5113	188	7	5	886	5	ELOVL4	6	80656915	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	35257233	80656915	90458152	110	72346										
ZNF292	0	genome.wustl.edu	37	chr6	87966306	87966306	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atttgtgtcatccaggtttcCaggagagaaaagaacaagat	10	6	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	87966306	87966306	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	nonsense	c.2959	p.Q987*	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	33	0	0	21	4	16	-	-	-	T	87966306	C	T	87966306	4	4	891	1	0	0	0	0	0	1	0	0	17922	595	21	4	2989	4	ZNF292	6	87966306	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	7309391	87966306	83148761	111	72347										
MDN1	0	genome.wustl.edu	37	chr6	90461233	90461233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtctcatctattgtaggctcCttgtctcccaccgcaatcca	6	15	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	90461233	90461233	C	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.3144	p.K1048N	0.984	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	83	0	0	41	16	28.07	-	-	-	A	90461233	C	A	90461233	3	1	891	1	0	0	0	0	1	0	0	0	9486	680	24	4	13966	4	MDN1	6	90461233	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2494927	90461233	80653834	112	72348										
ARMC2	0	genome.wustl.edu	37	chr6	109190033	109190033	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaatctctttccagaaaccgAaagttccagcatctcccacc	4	15	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	109190033	109190033	A	G	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	missense	c.298	p.K100E	0.968	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	29	0	0	33	7	17.5	-	-	-	G	109190033	A	G	109190033	3	3	891	1	0	0	0	0	1	0	0	0	955	247	9	5	308	5	ARMC2	6	109190033	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	18728800	109190033	61925034	113	72349										
ARMC2	0	genome.wustl.edu	37	chr6	109215690	109215690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggaccaggggaagagacatgCgagggcctcatcatgcccca	14	12	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	109215690	109215690	C	T	SNP	ARMC2	ENST00000392644	human	ensembl	69_37n	1	known	missense	c.692	p.A231V	0.000	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	30	0	0	27	7	20.59	-	-	-	T	109215690	C	T	109215690	3	4	891	1	0	0	0	0	1	0	0	0	955	768	27	1	710	1	ARMC2	6	109215690	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	25657	109215690	61899377	114	72350										
FAM162B	0	genome.wustl.edu	37	chr6	117083229	117083229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cactcgagctttgtttcttgCggtgtctatcatttctggcc	9	11	4	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	117083229	117083229	C	T	SNP	FAM162B	ENST00000368557	human	ensembl	69_37n	-1	known	missense	c.301	p.A101T	1.000	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC	ENSG00000183807	102	0	0	70	14	16.67	-	-	-	T	117083229	C	T	117083229	3	4	891	1	0	0	0	0	1	0	0	0	5515	768	27	1	195	1	FAM162B	6	117083229	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	7867539	117083229	54031838	115	72351										
ARHGAP18	0	genome.wustl.edu	37	chr6	130031253	130031253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtggtaggctgttagtaccActccctgggaactggagagc	15	9	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	130031253	130031253	A	G	SNP	ARHGAP18	ENST00000275189	human	ensembl	69_37n	-1	known	missense	c.29	p.V10A	0.999	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	63	0	0	33	5	12.82	-	-	-	G	130031253	A	G	130031253	3	3	891	1	0	0	0	0	1	0	0	0	870	159	6	5	2022	5	ARHGAP18	6	130031253	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	12948024	130031253	41083814	116	72352										
RMND1	0	genome.wustl.edu	37	chr6	151766618	151766618	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tagaacccaacagatttggtTtgtgggtcactctcctgtga	10	9	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	151766618	151766618	T	G	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	missense	c.329	p.K110T	0.113	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	98	0	0	56	15	21.13	-	-	-	G	151766618	T	G	151766618	3	3	891	1	0	0	0	0	1	0	0	0	13482	1841	64	5	1064	5	RMND1	6	151766618	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	21735365	151766618	19348449	117	72353										
LPA	0	genome.wustl.edu	37	chr6	161071369	161071369	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actgtaagattaatgacataCgcatttgggtagttttctgt	9	5	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	6	161071369	161071369	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	splice_site	c.209+1	e2+1	1.000	-	-	-	no_errors	LPA	HGNC	ENSG00000198670	106	0	0	42	13	23.64	-	-	-	T	161071369	C	T	161071369	5	4	891	1	0	0	0	0	0	0	1	0	8969	550	19	1	6064	1	LPA	6	161071369	Splice_Site	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	9304751	161071369	10043698	118	72354										
HEATR2	0	genome.wustl.edu	37	chr7	819661	819661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cctccaccttggtcacctggCtgcagtgtgtcaagggtgcc	12	14	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	819661	819661	C	G	SNP	HEATR2	ENST00000297440	human	ensembl	69_37n	1	known	missense	c.2311	p.L771V	1.000	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818	41	0	0	38	6	13.64	-	-	-	G	819661	C	G	819661	3	3	891	1	0	0	0	0	1	0	0	0	7079	796	28	4	2357	4	HEATR2	7	819661	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		819661	158319002	119	72355										
ZNF12	0	genome.wustl.edu	37	chr7	6730908	6730908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gacatctgagagaagaatttTccacatatatagcattcata	6	7	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	6730908	6730908	T	C	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	silent	c.1665	p.G555	0.988	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	40	0	0	33	6	15.38	-	-	-	C	6730908	T	C	6730908	2	2	891	1	0	0	0	0	0	0	0	1	17814	1770	62	5		5	ZNF12	7	6730908	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	5911247	6730908	152407755	120	72356										
THSD7A	0	genome.wustl.edu	37	chr7	11464340	11464340	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tacctcacttttcgggtttgCacgccctctccacagttctc	6	16	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	11464340	11464340	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.3366	p.V1122	0.991	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	84	0	0	40	10	20	-	-	-	T	11464340	C	T	11464340	2	4	891	1	0	0	0	0	0	0	0	1	15974	697	25	4		4	THSD7A	7	11464340	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4733432	11464340	147674323	121	72357										
DGKB	0	genome.wustl.edu	37	chr7	14758165	14758165	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aacaaaatgaagaaacacatAcactcaagcttatcctcagg	5	10	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	14758165	14758165	A	G	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	splice_site	c.466+2	e5+2	0.999	-	-	-	no_errors	DGKB	HGNC	ENSG00000136267	57	0	0	45	8	15.09	-	-	-	G	14758165	A	G	14758165	5	3	891	1	0	0	0	0	0	0	1	0	4502	405	14	5	2045	5	DGKB	7	14758165	Splice_Site	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	3293825	14758165	144380498	122	72358										
CREB5	0	genome.wustl.edu	37	chr7	28610052	28610052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctcaccagcttagcagcgctCggctgcccaaccatgacacc	8	18	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	28610052	28610052	C	T	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	1	known	missense	c.361	p.R121W	0.984	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	42	0	0	28	4	12.5	-	-	-	T	28610052	C	T	28610052	3	4	891	1	0	0	0	0	1	0	0	0	3890	875	31	1	379	1	CREB5	7	28610052	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	13851887	28610052	130528611	123	72359										
TYW1B	0	genome.wustl.edu	37	chr7	72081768	72081768	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgtaccacttcctcatgccaGggcacatgggccatggtaag	11	12	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	72081768	72081768	G	T	SNP	TYW1B	ENST00000438125	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	TYW1B	HGNC	ENSG00000254184	113	0	0	61	9	12.86	-	-	-	T	72081768	G	T	72081768	1	4	891	0	1	0	0	0	0	0	0	0	16916	987	35	4		4	TYW1B	7	72081768	RNA	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	43471716	72081768	87056895	124	72360										
PION	0	genome.wustl.edu	37	chr7	76984734	76984734	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caatgaggtagcatatcaatCatttcattatttcctggcaa	6	8	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	76984734	76984734	C	T	SNP	PION	ENST00000257626	human	ensembl	69_37n	-1	known	missense	c.1134	p.M378I	0.000	NULL	NULL	-	no_errors	PION	HGNC	ENSG00000186088	52	0	0	21	5	19.23	-	-	-	T	76984734	C	T	76984734	3	4	891	1	0	0	0	0	1	0	0	0	12008	826	29	2	1494	2	PION	7	76984734	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4902966	76984734	82153929	125	72361										
HGF	0	genome.wustl.edu	37	chr7	81339534	81339534	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttacaactcgcaattgtttCgttttggcacaagatattac	6	8	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	81339534	81339534	C	T	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	silent	c.1470	p.T490	1.000	superfamily_Pept_cys/ser_Trypsin-like	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	69	0	0	58	15	20.55	-	-	-	T	81339534	C	T	81339534	2	4	891	1	0	0	0	0	0	0	0	1	7136	871	31	1		1	HGF	7	81339534	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4354800	81339534	77799129	126	72362										
PCLO	0	genome.wustl.edu	37	chr7	82763887	82763887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtttcctttttcacaggtatActttttgcaggtgctggtgg	11	7	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	82763887	82763887	A	C	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.2979	p.S993R	0.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	100	0	0	34	6	15	-	-	-	C	82763887	A	C	82763887	3	2	891	1	0	0	0	0	1	0	0	0	11656	388	14	5	12558	5	PCLO	7	82763887	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	1424353	82763887	76374776	127	72363										
OCM2	0	genome.wustl.edu	37	chr7	97616394	97616394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcccatctccatcattatccGccgcagccatcaaggacttg	6	16	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	97616394	97616394	G	A	SNP	OCM2	ENST00000257627	human	ensembl	69_37n	-1	known	missense	c.269	p.A90V	0.234	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	-	no_errors	OCM2	HGNC	ENSG00000135175	129	0	0	54	11	16.92	-	-	-	A	97616394	G	A	97616394	3	1	891	1	0	0	0	0	1	0	0	0	10895	1087	38	1	68	1	OCM2	7	97616394	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	14852507	97616394	61522269	128	72364										
BAIAP2L1	0	genome.wustl.edu	37	chr7	97939890	97939890	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagcatttagaaagggtgtcGtaatctttcctaacctgtga	10	7	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	97939890	97939890	G	A	SNP	BAIAP2L1	ENST00000005260	human	ensembl	69_37n	-1	known	silent	c.822	p.Y274	0.434	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453	76	0	0	35	9	20.45	-	-	-	A	97939890	G	A	97939890	2	1	891	1	0	0	0	0	0	0	0	1	1306	1140	40	1		1	BAIAP2L1	7	97939890	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	323496	97939890	61198773	129	72365										
TRRAP	0	genome.wustl.edu	37	chr7	98574180	98574180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cgggactgccagcccagcgcGctgaactgctttgtggaagc	14	13	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	98574180	98574180	G	A	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	1	novel	missense	c.7178	p.R2393H	0.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	48	0	0	21	4	16	-	-	-	A	98574180	G	A	98574180	3	1	891	1	0	0	0	0	1	0	0	0	16697	1074	38	1	8165	1	TRRAP	7	98574180	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	634290	98574180	60564483	130	72366										
SYPL1	0	genome.wustl.edu	37	chr7	105733467	105733467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actgctttcttcttacaaggCggaagttcatcaataatatt	6	8	4	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	105733467	105733467	C	T	SNP	SYPL1	ENST00000464029	human	ensembl	69_37n	-1	putative	missense	c.290	p.R97H	0.001	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYPL1	HGNC	ENSG00000008282	40	0	0	42	8	16	-	-	-	T	105733467	C	T	105733467	3	4	891	1	0	0	0	0	1	0	0	0	15554	755	27	1	214	1	SYPL1	7	105733467	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	7159287	105733467	53405196	131	72367										
FLNC	0	genome.wustl.edu	37	chr7	128478072	128478072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcccaacaatgacaaggatcGcacctatgctgtctcctatg	7	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	128478072	128478072	G	A	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.1001	p.R334H	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	55	0	0	46	6	11.54	-	-	-	A	128478072	G	A	128478072	3	1	891	1	0	0	0	0	1	0	0	0	5981	1087	38	1	1023	1	FLNC	7	128478072	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	22744605	128478072	30660591	132	72368										
EZH2	0	genome.wustl.edu	37	chr7	148525902	148525902	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcgtctccatcatcatcatcGtcatcatcattatattgacc	3	13	7	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	148525902	148525902	G	A	SNP	EZH2	ENST00000320356	human	ensembl	69_37n	-1	known	silent	c.555	p.D185	0.201	smart_SANT/Myb	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462	110	0	0	59	16	21.33	-	-	-	A	148525902	G	A	148525902	2	1	891	1	0	0	0	0	0	0	0	1	5371	1136	40	1		1	EZH2	7	148525902	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	20047830	148525902	10612761	133	72369										
KCNH2	0	genome.wustl.edu	37	chr7	150654410	150654410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tctcagtgacattgtgggttCgctcctttatcttaggtgct	10	9	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	150654410	150654410	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	69_37n	-1	known	missense	c.1097	p.R366Q	1.000	NULL	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	71	0	0	22	7	24.14	-	-	-	T	150654410	C	T	150654410	3	4	891	1	0	0	0	0	1	0	0	0	8086	884	31	1	2807	1	KCNH2	7	150654410	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2128508	150654410	8484253	134	72370										
ABCF2	0	genome.wustl.edu	37	chr7	150915925	150915925	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tctgggcctgccgggccagcTtggcactgccatgaccaaac	12	15	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	150915925	150915925	T	C	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	missense	c.1052	p.K351R	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	47	0	0	31	11	26.19	-	-	-	C	150915925	T	C	150915925	3	2	891	1	0	0	0	0	1	0	0	0	66	1609	56	5	888	5	ABCF2	7	150915925	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	261515	150915925	8222738	135	72371										
RBM33	0	genome.wustl.edu	37	chr7	155567691	155567691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctttaaattttcacaggcatAtgatagatttgtcccacata	5	8	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	7	155567691	155567691	A	G	SNP	RBM33	ENST00000401878	human	ensembl	69_37n	1	known	missense	c.3469	p.M1157V	1.000	smart_RRM_dom	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	96	0	0	51	9	15	-	-	-	G	155567691	A	G	155567691	3	3	891	1	0	0	0	0	1	0	0	0	13213	449	16	5	3539	5	RBM33	7	155567691	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	4651766	155567691	3570972	136	72372										
XKR6	0	genome.wustl.edu	37	chr8	10755666	10755666	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tctgggaggtaaggacgcccCaacggggtagggggccccat	17	11	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	10755666	10755666	C	A	SNP	XKR6	ENST00000416569	human	ensembl	69_37n	-1	known	missense	c.1722	p.L574F	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044	23	0	0	21	6	22.22	-	-	-	A	10755666	C	A	10755666	3	1	891	1	0	0	0	0	1	0	0	0	17532	593	21	4	207	4	XKR6	8	10755666	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		10755666	135608356	137	72373										
DEFB136	0	genome.wustl.edu	37	chr8	11831477	11831477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atggatctttggcttgcgggGgttgaaaacgtgtcatattt	13	5	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	11831477	11831477	G	A	SNP	DEFB136	ENST00000382209	human	ensembl	69_37n	-1	known	missense	c.206	p.P69L	0.003	NULL	NULL	-	no_errors	DEFB136	HGNC	ENSG00000205884	51	0	0	43	8	15.69	-	-	-	A	11831477	G	A	11831477	3	1	891	1	0	0	0	0	1	0	0	0	4456	1232	43	4	32	4	DEFB136	8	11831477	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1075811	11831477	134532545	138	72374										
LOXL2	0	genome.wustl.edu	37	chr8	23198633	23198633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttgccctccttcacctccacGtagccctccatcactggggt	7	18	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	23198633	23198633	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	silent	c.615	p.Y205	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	40	0	0	24	5	17.24	-	-	-	A	23198633	G	A	23198633	2	1	891	1	0	0	0	0	0	0	0	1	8966	1140	40	1		1	LOXL2	8	23198633	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11367156	23198633	123165389	139	72375										
HOOK3	0	genome.wustl.edu	37	chr8	42868496	42868497	+	Frame_Shift_Ins	INS	-	-	AG													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atatgagaaaacaaagagtcINSagagagagatggaagagaaa							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	42868496	42868497	-	AG	INS	HOOK3	ENST00000307602	human	ensembl	69_37n	1	known	frame_shift_ins	c.1969_1970	p.M660fs	1.000:1.000	pfam_HOOK	pfam_HOOK,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172	54	0	0	37	6	13.95	-	-	-	AG	42868497	-	AG	42868496	7	5	891	1	0	1	1	0	0	0	0	0	7335	827	29	0	2051	0	HOOK3	8	42868496	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	19669863	42868496	103495526	140	72376										
NCOA2	0	genome.wustl.edu	37	chr8	71126143	71126143	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	attcagtcctcttaccttgtTctttgatctgacgaatttgc	6	10	4	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	71126143	71126143	T	A	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	missense	c.254	p.E85V	1.000	superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	83	0	0	89	17	16.04	-	-	-	A	71126143	T	A	71126143	3	1	891	1	0	0	0	0	1	0	0	0	10301	1783	62	5	4220	5	NCOA2	8	71126143	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	28257647	71126143	75237879	141	72377										
ODF1	0	genome.wustl.edu	37	chr8	103572819	103572819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aggtatgtgtgtcggctgagCgggagaacaggtacgactgc	17	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	103572819	103572819	C	T	SNP	ODF1	ENST00000285402	human	ensembl	69_37n	1	known	missense	c.460	p.R154W	1.000	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	-	no_errors	ODF1	HGNC	ENSG00000155087	76	0	0	36	7	16.28	-	-	-	T	103572819	C	T	103572819	3	4	891	1	0	0	0	0	1	0	0	0	10899	759	27	1	466	1	ODF1	8	103572819	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	32446676	103572819	42791203	142	72378										
PKHD1L1	0	genome.wustl.edu	37	chr8	110424608	110424608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atgttaaaccaaacagacgaCcatatggagatattttattg	7	6	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	110424608	110424608	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.2200	p.P734S	0.977	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	66	0	0	52	9	14.75	-	-	-	T	110424608	C	T	110424608	3	4	891	1	0	0	0	0	1	0	0	0	12046	507	18	4	2278	4	PKHD1L1	8	110424608	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6851789	110424608	35939414	143	72379										
ZHX1	0	genome.wustl.edu	37	chr8	124267675	124267675	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tagatattcccgaagaagaaActtctgtagattctgcttgc	8	8	2	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	124267675	124267675	A	G	SNP	ZHX1	ENST00000297857	human	ensembl	69_37n	-1	known	missense	c.512	p.V171A	0.095	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	46	0	0	37	6	13.95	-	-	-	G	124267675	A	G	124267675	3	3	891	1	0	0	0	0	1	0	0	0	17771	43	2	5	2113	5	ZHX1	8	124267675	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	13843067	124267675	22096347	144	72380										
ST3GAL1	0	genome.wustl.edu	37	chr8	134477024	134477024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccacaggagggactcactggGaaatggtgcccgtggtgatg	16	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	134477024	134477024	G	A	SNP	ST3GAL1	ENST00000319914	human	ensembl	69_37n	-1	known	missense	c.680	p.S227F	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513	25	0	0	14	4	22.22	-	-	-	A	134477024	G	A	134477024	3	1	891	1	0	0	0	0	1	0	0	0	15305	1174	41	2	358	2	ST3GAL1	8	134477024	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	10209349	134477024	11886998	145	72381										
TOP1MT	0	genome.wustl.edu	37	chr8	144406751	144406751	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtgacggtgttatcggagcgCacctccttccactggtgccc	12	14	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	144406751	144406751	C	T	SNP	TOP1MT	ENST00000329245	human	ensembl	69_37n	-1	known	silent	c.720	p.V240	0.122	pfam_TopoI_DNA-bd_euk,superfamily_TopoI_DNA-bd_euk,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,superfamily_TopoI_insert_euk,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428	26	0	0	14	6	30	-	-	-	T	144406751	C	T	144406751	2	4	891	1	0	0	0	0	0	0	0	1	16460	697	25	4		4	TOP1MT	8	144406751	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	9929727	144406751	1957271	146	72382										
ARHGAP39	0	genome.wustl.edu	37	chr8	145830970	145830970	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggcaggtcgacattatggctCctgcactcgtagtcctgcgt	12	12	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	8	145830970	145830970	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	silent	c.30	p.R10	0.933	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	39	0	0	14	4	22.22	-	-	-	T	145830970	C	T	145830970	2	4	891	1	0	0	0	0	0	0	0	1	886	854	30	2		2	ARHGAP39	8	145830970	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	1424219	145830970	533052	147	72383										
NFX1	0	genome.wustl.edu	37	chr9	33294960	33294960	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aagtcaaggggaaactcaaaTgtgaatggagtaaccgaaca	11	6	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	33294960	33294960	T	C	SNP	NFX1	ENST00000379540	human	ensembl	69_37n	1	known	missense	c.568	p.C190R	0.604	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102	41	0	0	23	7	23.33	-	-	-	C	33294960	T	C	33294960	3	2	891	1	0	0	0	0	1	0	0	0	10459	1464	51	5	574	5	NFX1	9	33294960	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		33294960	107918471	148	72384										
PGM5	0	genome.wustl.edu	37	chr9	71144508	71144508	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gctgagccctctcatagccaTcgcactgaaaatatcccaga	7	14	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	71144508	71144508	T	C	SNP	PGM5	ENST00000396396	human	ensembl	69_37n	1	known	missense	c.1640	p.I547T	0.997	NULL	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	47	0	0	26	9	25.71	-	-	-	C	71144508	T	C	71144508	3	2	891	1	0	0	0	0	1	0	0	0	11875	1435	50	5	1682	5	PGM5	9	71144508	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	37849548	71144508	70068923	149	72385										
TMC1	0	genome.wustl.edu	37	chr9	75445589	75445589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaaacaagaaaatggcagctGcacgagcaggttggagatac	13	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	75445589	75445589	G	A	SNP	TMC1	ENST00000297784	human	ensembl	69_37n	1	known	missense	c.2251	p.A751T	0.499	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091	118	0	0	90	10	10	-	-	-	A	75445589	G	A	75445589	3	1	891	1	0	0	0	0	1	0	0	0	16079	1319	46	4	2325	4	TMC1	9	75445589	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	4301081	75445589	65767842	150	72386										
SEMA4D	0	genome.wustl.edu	37	chr9	91994160	91994160	+	Frame_Shift_Del	DEL	G	G	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggcctgcacggctggggttGggggagaagacccttgggtg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	91994160	91994160	G	-	DEL	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	frame_shift_del	c.2048	p.P683fs	0.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	42	0	0	20	3	12	-	-	-	-	91994160	G	-	91994160	7	5	891	1	0	1	0	1	0	0	0	0	14122	1348	47	0	1114	0	SEMA4D	9	91994160	Frame_Shift_Del	DEL	G	TCGA-EW-A1IZ-01A-11D-A188-09	16548571	91994160	49219271	151	72387										
FANCC	0	genome.wustl.edu	37	chr9	97873907	97873907	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aggaaccagctctcaaagggAcctccgcaggacctggaaca	11	13	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	97873907	97873907	A	G	SNP	FANCC	ENST00000289081	human	ensembl	69_37n	-1	known	silent	c.1167	p.G389	0.000	pfam_Fanconi,pirsf_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	41	0	0	34	9	20.93	-	-	-	G	97873907	A	G	97873907	2	3	891	1	0	0	0	0	0	0	0	1	5710	262	10	5		5	FANCC	9	97873907	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	5879747	97873907	43339524	152	72388										
CDK5RAP2	0	genome.wustl.edu	37	chr9	123220813	123220813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttcttctaggcagccaggtgCgtgggccccatcacaatctg	11	13	4	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	123220813	123220813	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.2290	p.A764T	0.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	61	0	0	45	10	18.18	-	-	-	T	123220813	C	T	123220813	3	4	891	1	0	0	0	0	1	0	0	0	3175	768	27	1	3467	1	CDK5RAP2	9	123220813	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	25346906	123220813	17992618	153	72389										
TTC16	0	genome.wustl.edu	37	chr9	130485513	130485513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccagcaggcgcgccaagatgCggggatcctggctgtgcagg	17	12	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	130485513	130485513	C	T	SNP	TTC16	ENST00000373289	human	ensembl	69_37n	1	known	missense	c.773	p.A258V	0.272	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094	24	0	0	11	7	38.89	-	-	-	T	130485513	C	T	130485513	3	4	891	1	0	0	0	0	1	0	0	0	16780	768	27	1	799	1	TTC16	9	130485513	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	7264700	130485513	10727918	154	72390										
C8G	0	genome.wustl.edu	37	chr9	139840387	139840387	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccccgcccccccagggatggGatctgctggcaggtgcgcca	14	17	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	139840387	139840387	G	T	SNP	C8G	ENST00000224181	human	ensembl	69_37n	1	known	silent	c.282	p.G94	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_A1-microglobln,prints_Lipocalin	-	no_errors	C8G	HGNC	ENSG00000176919	26	0	0	17	6	26.09	-	-	-	T	139840387	G	T	139840387	2	4	891	1	0	0	0	0	0	0	0	1	2441	1161	41	2		2	C8G	9	139840387	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	9354874	139840387	1373044	155	72391										
PNPLA7	0	genome.wustl.edu	37	chr9	140361796	140361796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cactgcttggcccggatccgCatctggctgtagttccgctc	11	15	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	9	140361796	140361796	C	T	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	missense	c.3012	p.M1004I	0.982	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	33	0	0	24	5	17.24	-	-	-	T	140361796	C	T	140361796	3	4	891	1	0	0	0	0	1	0	0	0	12244	710	25	4	1056	4	PNPLA7	9	140361796	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	521409	140361796	851635	156	72392										
PFKFB3	0	genome.wustl.edu	37	chr10	6245267	6245267	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccgagtgcagaagatctgggTgcccgtggaccacaggccct	14	13	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	6245267	6245267	T	C	SNP	PFKFB3	ENST00000379782	human	ensembl	69_37n	1	known	missense	c.44	p.V15A	1.000	pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525	12	0	0	11	4	26.67	-	-	-	C	6245267	T	C	6245267	3	2	891	1	0	0	0	0	1	0	0	0	11836	1696	59	5	66	5	PFKFB3	10	6245267	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		6245267	129289480	157	72393										
CACNB2	0	genome.wustl.edu	37	chr10	18827198	18827198	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaggcctactggaaggccacCcatcctcccagcagtagcct	10	16	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	18827198	18827198	C	A	SNP	CACNB2	ENST00000324631	human	ensembl	69_37n	1	known	silent	c.1392	p.T464	0.851	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	69	0	0	50	7	12.28	-	-	-	A	18827198	C	A	18827198	2	1	891	1	0	0	0	0	0	0	0	1	2578	610	22	4		4	CACNB2	10	18827198	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	12581931	18827198	116707549	158	72394										
NEBL	0	genome.wustl.edu	37	chr10	21097452	21097452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttgatacctccttcatcagaCggtcttgttacctcactgca	6	13	4	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	21097452	21097452	C	T	SNP	NEBL	ENST00000377122	human	ensembl	69_37n	-1	known	silent	c.2748	p.P916	0.649	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114	39	0	0	27	6	18.18	-	-	-	T	21097452	C	T	21097452	2	4	891	1	0	0	0	0	0	0	0	1	10375	523	19	1		1	NEBL	10	21097452	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2270254	21097452	114437295	159	72395										
SPAG6	0	genome.wustl.edu	37	chr10	22680768	22680768	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cacactcctgaacacgcacgGgctgttgcagtcacaaatac	8	14	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	22680768	22680768	G	T	SNP	SPAG6	ENST00000376603	human	ensembl	69_37n	1	known	silent	c.1344	p.R448	0.568	superfamily_ARM-type_fold	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	72	0	0	50	10	16.67	-	-	-	T	22680768	G	T	22680768	2	4	891	1	0	0	0	0	0	0	0	1	15073	1219	43	4		4	SPAG6	10	22680768	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1583316	22680768	112853979	160	72396										
MASTL	0	genome.wustl.edu	37	chr10	27447506	27447506	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaaagcagacatgatcaacaAaaatatgactcatcaggtcc	6	9	3	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	27447506	27447506	A	G	SNP	MASTL	ENST00000375940	human	ensembl	69_37n	1	known	missense	c.215	p.K72R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MASTL	HGNC	ENSG00000120539	73	0	0	52	16	23.53	-	-	-	G	27447506	A	G	27447506	3	3	891	1	0	0	0	0	1	0	0	0	9399	14	1	5	221	5	MASTL	10	27447506	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	4766738	27447506	108087241	161	72397										
LYZL1	0	genome.wustl.edu	37	chr10	29580826	29580826	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcgggcattctgaccctcatTggctgcctggtcacaggcgc	13	14	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	29580826	29580826	T	C	SNP	LYZL1	ENST00000375500	human	ensembl	69_37n	1	known	silent	c.168	p.I56	0.230	NULL	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL1	HGNC	ENSG00000120563	43	0	0	14	4	22.22	-	-	-	C	29580826	T	C	29580826	2	2	891	1	0	0	0	0	0	0	0	1	9198	1800	63	5		5	LYZL1	10	29580826	Silent	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	2133320	29580826	105953921	162	72398										
JMJD1C	0	genome.wustl.edu	37	chr10	64974383	64974383	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccaccttttctaaattagtgTcatttgtaatatcaataaca	3	8	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	64974383	64974383	T	G	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.1544	p.D515A	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	51	0	0	54	7	11.48	-	-	-	G	64974383	T	G	64974383	3	3	891	1	0	0	0	0	1	0	0	0	8004	1667	58	5	6154	5	JMJD1C	10	64974383	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	35393557	64974383	70560364	163	72399										
SEC24C	0	genome.wustl.edu	37	chr10	75510956	75510956	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcatatggccagtttggccAaggagatgtacagaatgggc	14	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	75510956	75510956	A	G	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	1	known	missense	c.263	p.Q88R	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	37	0	0	17	4	19.05	-	-	-	G	75510956	A	G	75510956	3	3	891	1	0	0	0	0	1	0	0	0	14084	130	5	5	269	5	SEC24C	10	75510956	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	10536573	75510956	60023791	164	72400										
NRG3	0	genome.wustl.edu	37	chr10	83637750	83637750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tacctccaacccttgtatgcGttgggagaggagggggacta	14	9	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	83637750	83637750	G	A	SNP	NRG3	ENST00000372142	human	ensembl	69_37n	1	known	missense	c.34	p.V12I	0.035	NULL	pfam_Neuregulin_1_C,pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	122	0	0	63	16	20.25	-	-	-	A	83637750	G	A	83637750	3	1	891	1	0	0	0	0	1	0	0	0	10722	1145	40	1	863	1	NRG3	10	83637750	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	8126794	83637750	51896997	165	72401										
LGI1	0	genome.wustl.edu	37	chr10	95557468	95557468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caccaagatcattcacacatGtgtccattaataagcgtaat	5	10	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	95557468	95557468	G	A	SNP	LGI1	ENST00000371418	human	ensembl	69_37n	1	known	missense	c.1582	p.V528M	1.000	pfam_EPTP,superfamily_WD40_repeat_dom,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231	29	0	0	27	6	18.18	-	-	-	A	95557468	G	A	95557468	3	1	891	1	0	0	0	0	1	0	0	0	8806	1377	48	4	1612	4	LGI1	10	95557468	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11919718	95557468	39977279	166	72402										
CWF19L1	0	genome.wustl.edu	37	chr10	102006652	102006652	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gttttaccagttctgctgcaTccattagcttcatgggaaca	8	10	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	102006652	102006652	T	C	SNP	CWF19L1	ENST00000354105	human	ensembl	69_37n	-1	known	missense	c.749	p.D250G	0.927	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485	79	0	0	42	7	14.29	-	-	-	C	102006652	T	C	102006652	3	2	891	1	0	0	0	0	1	0	0	0	4102	1435	50	5	895	5	CWF19L1	10	102006652	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	6449184	102006652	33528095	167	72403										
HSPA12A	0	genome.wustl.edu	37	chr10	118458152	118458152	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actatcagtcctaccttcagCgcctgctccttaaagtactg	6	14	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	118458152	118458152	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	0.031	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	57	0	0	31	9	22.5	-	-	-	T	118458152	C	T	118458152	2	4	891	1	0	0	0	0	0	0	0	1	7457	755	27	1		1	HSPA12A	10	118458152	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	16451500	118458152	17076595	168	72404										
WDR11	0	genome.wustl.edu	37	chr10	122643389	122643389	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgtccaaaaacttccctacaAtaactgctttggtaagttac	5	10	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	122643389	122643389	A	G	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	1	known	missense	c.1837	p.I613V	0.165	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	72	0	0	41	16	28.07	-	-	-	G	122643389	A	G	122643389	3	3	891	1	0	0	0	0	1	0	0	0	17370	101	4	5	1891	5	WDR11	10	122643389	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	4185237	122643389	12891358	169	72405										
TACC2	0	genome.wustl.edu	37	chr10	123848088	123848088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cacttcagatgagaccagagGtgcggaaggaacagaaaggt	14	7	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	123848088	123848088	G	A	SNP	TACC2	ENST00000334433	human	ensembl	69_37n	1	known	missense	c.5555	p.G1852D	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162	38	0	0	37	5	11.9	-	-	-	A	123848088	G	A	123848088	3	1	891	1	0	0	0	0	1	0	0	0	15594	1261	44	4	5569	4	TACC2	10	123848088	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1204699	123848088	11686659	170	72406										
CLRN3	0	genome.wustl.edu	37	chr10	129676623	129676623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agcatttggaacaactcttcGgagagttggttggactgcgt	13	7	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	129676623	129676623	G	A	SNP	CLRN3	ENST00000368671	human	ensembl	69_37n	-1	known	silent	c.471	p.S157	0.000	NULL	NULL	-	no_errors	CLRN3	HGNC	ENSG00000180745	36	0	0	29	9	23.68	-	-	-	A	129676623	G	A	129676623	2	1	891	1	0	0	0	0	0	0	0	1	3589	1103	39	1		1	CLRN3	10	129676623	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	5828535	129676623	5858124	171	72407										
ADAM8	0	genome.wustl.edu	37	chr10	135084508	135084508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cgggcactcagggtgccggcCgtcacagaactcctcgaggt	14	14	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	10	135084508	135084508	C	T	SNP	ADAM8	ENST00000445355	human	ensembl	69_37n	-1	known	missense	c.1441	p.G481S	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM8	HGNC	ENSG00000151651	29	0	0	13	4	23.53	-	-	-	T	135084508	C	T	135084508	3	4	891	1	0	0	0	0	1	0	0	0	252	652	23	1	991	1	ADAM8	10	135084508	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5407885	135084508	450239	172	72408										
SIRT3	0	genome.wustl.edu	37	chr11	233199	233199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctgctggaggttgctgtacaGgccactccccggcgatctgc	13	14	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	233199	233199	G	T	SNP	SIRT3	ENST00000382743	human	ensembl	69_37n	-1	known	missense	c.490	p.L164M	0.936	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	54	0	0	35	7	16.67	-	-	-	T	233199	G	T	233199	3	4	891	1	0	0	0	0	1	0	0	0	14428	991	35	4	729	4	SIRT3	11	233199	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		233199	134773317	173	72409										
RNH1	0	genome.wustl.edu	37	chr11	502136	502136	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctcagctcctcacactggatGtccaggctctggatgtccag	10	14	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	502136	502136	G	A	SNP	RNH1	ENST00000354420	human	ensembl	69_37n	-1	known	silent	c.27	p.D9	0.797	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191	55	0	0	40	6	13.04	-	-	-	A	502136	G	A	502136	2	1	891	1	0	0	0	0	0	0	0	1	13590	1368	48	4		4	RNH1	11	502136	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	268937	502136	134504380	174	72410										
PRKCDBP	0	genome.wustl.edu	37	chr11	6340459	6340459	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtctcccgggatcttcctcGgtgtcctgcggaggctctgg	15	13	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	6340459	6340459	G	A	SNP	PRKCDBP	ENST00000303927	human	ensembl	69_37n	-1	known	silent	c.720	p.T240	0.049	NULL	NULL	-	no_errors	PRKCDBP	HGNC	ENSG00000170955	29	0	0	19	6	24	-	-	-	A	6340459	G	A	6340459	2	1	891	1	0	0	0	0	0	0	0	1	12591	1103	39	1		1	PRKCDBP	11	6340459	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	5838323	6340459	128666057	175	72411										
DCHS1	0	genome.wustl.edu	37	chr11	6653279	6653279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caccagtctgggggtggatgCggaaggccttgctgtcttca	15	10	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	6653279	6653279	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.3464	p.R1155H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	102	1	0.97	40	8	16.67	-	-	-	T	6653279	C	T	6653279	3	4	891	1	0	0	0	0	1	0	0	0	4318	768	27	1	6496	1	DCHS1	11	6653279	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	312820	6653279	128353237	176	72412										
OR4X1	0	genome.wustl.edu	37	chr11	48285598	48285598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccatgtatttctttctcagCtacttatcctttgtggagat	6	10	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	48285598	48285598	C	A	SNP	OR4X1	ENST00000320048	human	ensembl	69_37n	1	known	missense	c.186	p.S62R	0.996	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567	94	0	0	61	9	12.86	-	-	-	A	48285598	C	A	48285598	3	1	891	1	0	0	0	0	1	0	0	0	11157	796	28	4	188	4	OR4X1	11	48285598	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	41632319	48285598	86720918	177	72413										
OR10AG1	0	genome.wustl.edu	37	chr11	55735641	55735641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcagaaggagacactccgtgCctccaagcataagaaaaaaa	8	10	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	55735641	55735641	C	T	SNP	OR10AG1	ENST00000312345	human	ensembl	69_37n	-1	known	missense	c.299	p.G100D	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	43	0	0	40	14	25.93	-	-	-	T	55735641	C	T	55735641	3	4	891	1	0	0	0	0	1	0	0	0	10970	739	26	4	609	4	OR10AG1	11	55735641	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	7450043	55735641	79270875	178	72414										
SSH3	0	genome.wustl.edu	37	chr11	67079319	67079319	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttccggaaggtggtgagacaGgccagcgtgcatgacagtgg	17	8	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	67079319	67079319	G	A	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	1	known	silent	c.1941	p.Q647	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	13	0	0	7	4	36.36	-	-	-	A	67079319	G	A	67079319	2	1	891	1	0	0	0	0	0	0	0	1	15277	991	35	4		4	SSH3	11	67079319	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11343678	67079319	67927197	179	72415										
ALDH3B2	0	genome.wustl.edu	37	chr11	67434057	67434057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctcctcacctgcggcgagggCgcccaccaggagcaccaggg	14	17	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	67434057	67434057	C	T	SNP	ALDH3B2	ENST00000349015	human	ensembl	69_37n	-1	known	missense	c.139	p.A47T	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746	42	0	0	23	6	20	-	-	-	T	67434057	C	T	67434057	3	4	891	1	0	0	0	0	1	0	0	0	500	768	27	1	1046	1	ALDH3B2	11	67434057	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	354738	67434057	67572459	180	72416										
TYR	0	genome.wustl.edu	37	chr11	88911273	88911273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tccctgtggccagctttcagGcagaggttcctgtcagaata	11	11	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	88911273	88911273	G	A	SNP	TYR	ENST00000263321	human	ensembl	69_37n	1	known	missense	c.152	p.G51D	1.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	37	0	0	22	12	35.29	-	-	-	A	88911273	G	A	88911273	3	1	891	1	0	0	0	0	1	0	0	0	16910	1203	42	4	154	4	TYR	11	88911273	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	21477216	88911273	46095243	181	72417										
SIK3	0	genome.wustl.edu	37	chr11	116734457	116734457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgaaggcctggatgctcgcaGccccatctgagaaccggcgc	13	14	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	116734457	116734457	G	A	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	missense	c.1886	p.A629V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	90	0	0	43	8	15.69	-	-	-	A	116734457	G	A	116734457	3	1	891	1	0	0	0	0	1	0	0	0	14408	971	34	4	2115	4	SIK3	11	116734457	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	27823184	116734457	18272059	182	72418										
OR6X1	0	genome.wustl.edu	37	chr11	123624868	123624868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gattgcagatggtgaggtagCggtcaaaagacatgatagtg	15	4	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	123624868	123624868	C	T	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.359	p.R120H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	72	0	0	39	8	17.02	-	-	-	T	123624868	C	T	123624868	3	4	891	1	0	0	0	0	1	0	0	0	11285	768	27	1	581	1	OR6X1	11	123624868	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6890411	123624868	11381648	183	72419										
NFRKB	0	genome.wustl.edu	37	chr11	129739508	129739508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cacagctacagtcttggacaCagcagcattcatactgggta	9	11	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	11	129739508	129739508	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	missense	c.3487	p.V1163M	0.985	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	21	0	0	15	5	25	-	-	-	T	129739508	C	T	129739508	3	4	891	1	0	0	0	0	1	0	0	0	10456	478	17	4	503	4	NFRKB	11	129739508	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6114640	129739508	5267008	184	72420										
GALNT8	0	genome.wustl.edu	37	chr12	4870281	4870281	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggatgagcacaaacacatggTctacttggcctggaacatac	10	10	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	4870281	4870281	T	C	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	missense	c.1331	p.V444A	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	40	0	0	23	4	14.81	-	-	-	C	4870281	T	C	4870281	3	2	891	1	0	0	0	0	1	0	0	0	6269	1667	58	5	1357	5	GALNT8	12	4870281	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		4870281	128981614	185	72421										
SPSB2	0	genome.wustl.edu	37	chr12	6981614	6981615	+	Frame_Shift_Ins	INS	-	-	G													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctgagttcccgctggatactINSggggggctccgggccccttg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	6981614	6981615	-	G	INS	SPSB2	ENST00000523102	human	ensembl	69_37n	-1	known	frame_shift_ins	c.452_451	p.Q151fs	0.000:0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB2	HGNC	ENSG00000111671	25	0	0	17	4	19.05	-	-	-	G	6981615	-	G	6981614	7	5	891	1	0	1	1	0	0	0	0	0	15204	1580	55	0	347	0	SPSB2	12	6981614	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	2111333	6981614	126870281	186	72422										
WBP11	0	genome.wustl.edu	37	chr12	14948019	14948019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctggcaaaggaatactctccActtccacatgctgagcattc	7	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	14948019	14948019	A	G	SNP	WBP11	ENST00000261167	human	ensembl	69_37n	-1	known	missense	c.407	p.V136A	1.000	NULL	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463	37	0	0	32	7	17.95	-	-	-	G	14948019	A	G	14948019	3	3	891	1	0	0	0	0	1	0	0	0	17355	159	6	5	1546	5	WBP11	12	14948019	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	7966405	14948019	118903876	187	72423										
STK38L	0	genome.wustl.edu	37	chr12	27475300	27475300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggactacaaatccaaagactGggtttttctcaattatacct	6	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	27475300	27475300	G	T	SNP	STK38L	ENST00000389032	human	ensembl	69_37n	1	known	missense	c.1307	p.W436L	1.000	pfam_Pkinase_C,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	STK38L	HGNC	ENSG00000211455	33	0	0	35	8	18.6	-	-	-	T	27475300	G	T	27475300	3	4	891	1	0	0	0	0	1	0	0	0	15395	1357	47	4	1357	4	STK38L	12	27475300	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	12527281	27475300	106376595	188	72424										
CAPRIN2	0	genome.wustl.edu	37	chr12	30904069	30904069	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tataatcctccagtttgagcTacaaaagagaaacttgtatc	6	8	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	30904069	30904069	T	C	SNP	CAPRIN2	ENST00000251071	human	ensembl	69_37n	-1	known	splice_site	c.421-2	e2-2	1.000	-	-	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	46	0	0	43	9	17.31	-	-	-	C	30904069	T	C	30904069	5	2	891	1	0	0	0	0	0	0	1	0	2661	1536	53	5	3032	5	CAPRIN2	12	30904069	Splice_Site	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	3428769	30904069	102947826	189	72425										
YARS2	0	genome.wustl.edu	37	chr12	32903765	32903765	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gacatgcagctgcatgatatGatcaatctctggaaggggca	12	8	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	32903765	32903765	G	A	SNP	YARS2	ENST00000324868	human	ensembl	69_37n	-1	known	missense	c.991	p.H331Y	1.000	pfam_aa-tRNA-synth_Ic,tigrfam_Tyr-tRNA-synth	pfam_aa-tRNA-synth_Ic,prints_Tyr-tRNA-synth,tigrfam_Tyr-tRNA-synth	-	no_errors	YARS2	HGNC	ENSG00000139131	47	0	0	47	8	14.55	-	-	-	A	32903765	G	A	32903765	3	1	891	1	0	0	0	0	1	0	0	0	17565	1290	45	2	454	2	YARS2	12	32903765	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1999696	32903765	100948130	190	72426										
ALG10	0	genome.wustl.edu	37	chr12	34179103	34179103	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agacttccacctattaaaggAccatttgcagaattcagaaa	6	9	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	34179103	34179103	A	G	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	1	known	silent	c.675	p.G225	0.997	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	100	0	0	62	12	16.22	-	-	-	G	34179103	A	G	34179103	2	3	891	1	0	0	0	0	0	0	0	1	511	262	10	5		5	ALG10	12	34179103	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	1275338	34179103	99672792	191	72427										
SP1	0	genome.wustl.edu	37	chr12	53775933	53775933	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggctctgctggcagcaactTgcagcagaattgagtcaccc	11	12	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	53775933	53775933	T	C	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.202	p.C68R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	33	0	0	17	5	22.73	-	-	-	C	53775933	T	C	53775933	3	2	891	1	0	0	0	0	1	0	0	0	15048	1812	63	5	212	5	SP1	12	53775933	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	19596830	53775933	80075962	192	72428										
GPR84	0	genome.wustl.edu	37	chr12	54757017	54757017	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtccagtgcctgtgctgctcGtttgacctggcggtggatga	15	10	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	54757017	54757017	G	A	SNP	GPR84	ENST00000267015	human	ensembl	69_37n	-1	known	nonsense	c.619	p.R207*	0.014	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572	107	0	0	44	5	10	-	-	-	A	54757017	G	A	54757017	4	1	891	1	0	0	0	0	0	1	0	0	6764	1153	40	1	575	1	GPR84	12	54757017	Nonsense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	981084	54757017	79094878	193	72429										
SMARCC2	0	genome.wustl.edu	37	chr12	56572801	56572801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccaggtcggtcatggtgccgCctttgactggggccgactct	14	13	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	56572801	56572801	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.1121	p.G374D	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	63	0	0	45	8	15.09	-	-	-	T	56572801	C	T	56572801	3	4	891	1	0	0	0	0	1	0	0	0	14865	739	26	4	2688	4	SMARCC2	12	56572801	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	1815784	56572801	77279094	194	72430										
USP15	0	genome.wustl.edu	37	chr12	62786055	62786056	+	Frame_Shift_Del	DEL	TT	TT	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaaatacttctctttaggacTttgaaaaacatgaaagtgtg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	62786055	62786056	TT	-	DEL	USP15	ENST00000280377	human	ensembl	69_37n	1	known	frame_shift_del	c.2308_2309	p.F770fs	1.000:1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	36	0	0	38	5	11.36	-	-	-	-	62786056	TT	-	62786055	7	5	891	1	0	1	0	1	0	0	0	0	17143	1609	56	0	2287	0	USP15	12	62786055	Frame_Shift_Del	DEL	TT	TCGA-EW-A1IZ-01A-11D-A188-09	6213254	62786055	71065840	195	72431										
MYF6	0	genome.wustl.edu	37	chr12	81102372	81102372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttccgatcattccagggggCtcgtgataacggctaaggaa	12	9	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	81102372	81102372	C	T	SNP	MYF6	ENST00000228641	human	ensembl	69_37n	1	known	missense	c.589	p.L197F	1.000	NULL	pfam_Basic,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_Basic,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MYF6	HGNC	ENSG00000111046	28	0	0	28	9	24.32	-	-	-	T	81102372	C	T	81102372	3	4	891	1	0	0	0	0	1	0	0	0	10100	797	28	4	595	4	MYF6	12	81102372	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	18316317	81102372	52749523	196	72432										
STAB2	0	genome.wustl.edu	37	chr12	104129268	104129268	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtggtgccatcactcctacaGgttttagctgtggatcttcc	10	11	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	104129268	104129268	G	T	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	splice_site	c.5461-1	e52-1	0.997	-	-	-	no_errors	STAB2	HGNC	ENSG00000136011	35	0	0	31	7	18.42	-	-	-	T	104129268	G	T	104129268	5	4	891	1	0	0	0	0	0	0	1	0	15329	1014	35	4	5666	4	STAB2	12	104129268	Splice_Site	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	23026896	104129268	29722627	197	72433										
CHST11	0	genome.wustl.edu	37	chr12	105151273	105151273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcatcgacccacacacccagCgggaggagcctttcaacgaa	9	15	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	105151273	105151273	C	T	SNP	CHST11	ENST00000303694	human	ensembl	69_37n	1	known	missense	c.751	p.R251W	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	60	0	0	27	6	17.65	-	-	-	T	105151273	C	T	105151273	3	4	891	1	0	0	0	0	1	0	0	0	3428	759	27	1	761	1	CHST11	12	105151273	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	1022005	105151273	28700622	198	72434										
PWP1	0	genome.wustl.edu	37	chr12	108090359	108090359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcctagcccagatgattctaCtggtaattagaaaacttaag	7	8	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	108090359	108090359	C	T	SNP	PWP1	ENST00000412830	human	ensembl	69_37n	1	known	missense	c.611	p.T204I	0.564	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045	102	0	0	73	9	10.98	-	-	-	T	108090359	C	T	108090359	3	4	891	1	0	0	0	0	1	0	0	0	12926	565	20	4	633	4	PWP1	12	108090359	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2939086	108090359	25761536	199	72435										
PLBD2	0	genome.wustl.edu	37	chr12	113826338	113826338	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acgtgggaccaggtgcccccGttccagtggagcacctcgcc	13	16	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	113826338	113826338	G	A	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	silent	c.1677	p.P559	0.258	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	31	0	0	11	4	26.67	-	-	-	A	113826338	G	A	113826338	2	1	891	1	0	0	0	0	0	0	0	1	12100	1132	40	1		1	PLBD2	12	113826338	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	5735979	113826338	20025557	200	72436										
NOS1	0	genome.wustl.edu	37	chr12	117680511	117680511	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttgtggacattggatagacCtgtggggagaaaaacaacag	13	5	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	117680511	117680511	C	T	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	splice_site	c.2963-1	e19-1	1.000	-	-	-	no_errors	NOS1	HGNC	ENSG00000089250	68	0	0	46	9	16.36	-	-	-	T	117680511	C	T	117680511	5	4	891	1	0	0	0	0	0	0	1	0	10613	695	24	4	1382	4	NOS1	12	117680511	Splice_Site	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	3854173	117680511	16171384	201	72437										
HNF1A	0	genome.wustl.edu	37	chr12	121432116	121432117	+	Frame_Shift_Ins	INS	-	-	C													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gccatggacacgtacagcggINSgccccccccagggccaggcc							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	121432116	121432117	-	C	INS	HNF1A	ENST00000257555	human	ensembl	69_37n	1	known	frame_shift_ins	c.863_864	p.P289fs	0.997:0.998	pfam_HNF1b_C,superfamily_Homeodomain-like	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	16	0	0	11	4	26.67	-	-	-	C	121432117	-	C	121432116	7	5	891	1	0	1	1	0	0	0	0	0	7302	1232	43	0	877	0	HNF1A	12	121432116	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	3751605	121432116	12419779	202	72438										
RNF34	0	genome.wustl.edu	37	chr12	121853973	121853973	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cctttttaggcgggtgccacGtctatgtgggcttcgtgctg	14	10	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	121853973	121853973	G	A	SNP	RNF34	ENST00000392465	human	ensembl	69_37n	1	known	silent	c.21	p.T7	0.007	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF34	HGNC	ENSG00000170633	40	0	0	44	6	12	-	-	-	A	121853973	G	A	121853973	2	1	891	1	0	0	0	0	0	0	0	1	13575	1132	40	1		1	RNF34	12	121853973	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	421857	121853973	11997922	203	72439										
PITPNM2	0	genome.wustl.edu	37	chr12	123519107	123519107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtactcctccacggtcattgGcagaggaatccgatattcct	9	12	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	12	123519107	123519107	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	69_37n	-1	known	missense	c.31	p.P11S	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975	40	0	0	25	6	19.35	-	-	-	A	123519107	G	A	123519107	3	1	891	1	0	0	0	0	1	0	0	0	12025	1203	42	4	4114	4	PITPNM2	12	123519107	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1665134	123519107	10332788	204	72440										
XPO4	0	genome.wustl.edu	37	chr13	21362688	21362689	+	Frame_Shift_Ins	INS	-	-	T													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atcctcaggaagctgtggtaINSttttttcaggaaaaatctca							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	21362688	21362689	-	T	INS	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2984_2983	p.I995fs	1.000:1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	47	0	0	45	10	18.18	-	-	-	T	21362689	-	T	21362688	7	5	891	1	0	1	1	0	0	0	0	0	17543	449	16	0	487	0	XPO4	13	21362688	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09		21362688	93807190	205	72441										
MIPEP	0	genome.wustl.edu	37	chr13	24460601	24460601	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaggctttttcttgtgcaatAtgaaatccttctggggcact	9	8	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	24460601	24460601	A	G	SNP	MIPEP	ENST00000382172	human	ensembl	69_37n	-1	known	silent	c.234	p.H78	0.000	NULL	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001	35	0	0	35	7	16.67	-	-	-	G	24460601	A	G	24460601	2	3	891	1	0	0	0	0	0	0	0	1	9663	446	16	5		5	MIPEP	13	24460601	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	3097913	24460601	90709277	206	72442										
MTUS2	0	genome.wustl.edu	37	chr13	29600608	29600608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccaaagtgcctgacaagaaCacttgccccagtgggatccc	9	15	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	29600608	29600608	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	1	known	silent	c.1803	p.N601	0.014	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	28	0	0	20	7	25.93	-	-	-	T	29600608	C	T	29600608	2	4	891	1	0	0	0	0	0	0	0	1	10038	477	17	4		4	MTUS2	13	29600608	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5140007	29600608	85569270	207	72443										
DCLK1	0	genome.wustl.edu	37	chr13	36445388	36445388	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtggaggcaggggacttgcTacgcctggacggtcctgggc	19	10	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	36445388	36445388	T	C	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	missense	c.913	p.S305G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	94	0	0	50	6	10.71	-	-	-	C	36445388	T	C	36445388	3	2	891	1	0	0	0	0	1	0	0	0	4322	1522	53	5	1332	5	DCLK1	13	36445388	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	6844780	36445388	78724490	208	72444										
SUCLA2	0	genome.wustl.edu	37	chr13	48563103	48563103	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaaacctgtgcctttatcacGacatcttttgaacctagaag	6	10	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	48563103	48563103	G	A	SNP	SUCLA2	ENST00000378654	human	ensembl	69_37n	-1	known	silent	c.285	p.V95	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLA2	HGNC	ENSG00000136143	43	0	0	36	5	12.2	-	-	-	A	48563103	G	A	48563103	2	1	891	1	0	0	0	0	0	0	0	1	15454	1045	37	1		1	SUCLA2	13	48563103	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	12117715	48563103	66606775	209	72445										
SETDB2	0	genome.wustl.edu	37	chr13	50050946	50050946	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cagataacttttctttcaatAcctatgttcagttggctcgg	7	9	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	50050946	50050946	A	G	SNP	SETDB2	ENST00000317257	human	ensembl	69_37n	1	known	missense	c.676	p.T226A	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169	58	0	0	33	5	13.16	-	-	-	G	50050946	A	G	50050946	3	3	891	1	0	0	0	0	1	0	0	0	14227	391	14	5	698	5	SETDB2	13	50050946	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	1487843	50050946	65118932	210	72446										
MYCBP2	0	genome.wustl.edu	37	chr13	77669522	77669522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtctgcaggtagagacaaggCattttcacaggaagatcctc	11	9	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	13	77669522	77669522	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.10170	p.M3390I	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	69	0	0	39	6	13.33	-	-	-	T	77669522	C	T	77669522	3	4	891	1	0	0	0	0	1	0	0	0	10090	710	25	4	3970	4	MYCBP2	13	77669522	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	27618576	77669522	37500356	211	72447										
NEK9	0	genome.wustl.edu	37	chr14	75572697	75572697	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttctgaatccaaacccagtcGtcctgaaacacacataagaa	5	12	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	14	75572697	75572697	G	A	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	nonsense	c.1531	p.R511*	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	96	0	0	50	21	29.58	-	-	-	A	75572697	G	A	75572697	4	1	891	1	0	0	0	0	0	1	0	0	10403	1153	40	1	1448	1	NEK9	14	75572697	Nonsense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		75572697	31776843	212	72448										
FAM181A	0	genome.wustl.edu	37	chr14	94391640	94391641	+	Frame_Shift_Ins	INS	-	-	T													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccttagaagagagaagatcINSttctggagagaggaatgatg							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	14	94391640	94391641	-	T	INS	FAM181A	ENST00000267594	human	ensembl	69_37n	1	known	frame_shift_ins	c.23_24	p.S9fs	0.000:0.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067	44	0	0	23	5	17.86	-	-	-	T	94391641	-	T	94391640	7	5	891	1	0	1	1	0	0	0	0	0	5549	913	32	0	25	0	FAM181A	14	94391640	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	18818943	94391640	12957900	213	72449										
APBA2	0	genome.wustl.edu	37	chr15	29367161	29367161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcagccaaggaagcagcagcGctctgatctcaatggacctg	12	12	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	29367161	29367161	G	A	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.989	p.R330H	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	69	0	0	45	6	11.76	-	-	-	A	29367161	G	A	29367161	3	1	891	1	0	0	0	0	1	0	0	0	758	1087	38	1	995	1	APBA2	15	29367161	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		29367161	73164231	214	72450										
RYR3	0	genome.wustl.edu	37	chr15	34049768	34049768	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cttagcagcagcggatatgcCtcccataaggagaaagaaat	10	9	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	34049768	34049768	C	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.8676	p.A2892	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	100	0	0	47	10	17.54	-	-	-	A	34049768	C	A	34049768	2	1	891	1	0	0	0	0	0	0	0	1	13856	668	24	4		4	RYR3	15	34049768	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4682607	34049768	68481624	215	72451										
RYR3	0	genome.wustl.edu	37	chr15	34156378	34156378	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	attaataaagatgaaacagaGcacacgggtcaggtgagaaa	11	5	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	34156378	34156378	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.14505	p.E4835	0.897	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	66	0	0	26	6	18.75	-	-	-	A	34156378	G	A	34156378	2	1	891	1	0	0	0	0	0	0	0	1	13856	962	34	4		4	RYR3	15	34156378	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	106610	34156378	68375014	216	72452										
SMAD3	0	genome.wustl.edu	37	chr15	67358560	67358560	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gggctggaagaagggcgagcAgaacgggcaggaggagaaat	20	5	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	67358560	67358560	A	G	SNP	SMAD3	ENST00000327367	human	ensembl	69_37n	1	known	missense	c.68	p.Q23R	1.000	superfamily_MAD_homology_MH1,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949	34	0	0	22	4	15.38	-	-	-	G	67358560	A	G	67358560	3	3	891	1	0	0	0	0	1	0	0	0	14848	188	7	5	70	5	SMAD3	15	67358560	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	33202182	67358560	35172832	217	72453										
MYO9A	0	genome.wustl.edu	37	chr15	72119094	72119094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcccttttccgggttgaaggTtcctctgctgatgaactgag	12	10	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	72119094	72119094	T	C	SNP	MYO9A	ENST00000424560	human	ensembl	69_37n	-1	known	missense	c.7687	p.T2563A	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	136	0	0	76	16	17.39	-	-	-	C	72119094	T	C	72119094	3	2	891	1	0	0	0	0	1	0	0	0	10156	1725	60	5	176	5	MYO9A	15	72119094	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	4760534	72119094	30412298	218	72454										
CPEB1	0	genome.wustl.edu	37	chr15	83240148	83240148	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtcctgggtgctccagggtcGgtcccagcctgtcagactga	14	13	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	83240148	83240148	G	A	SNP	CPEB1	ENST00000562019	human	ensembl	69_37n	-1	known	nonsense	c.325	p.R109*	1.000	NULL	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575	70	0	0	25	6	19.35	-	-	-	A	83240148	G	A	83240148	4	1	891	1	0	0	0	0	0	1	0	0	3830	1124	39	1	1415	1	CPEB1	15	83240148	Nonsense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	11121054	83240148	19291244	219	72455										
ANPEP	0	genome.wustl.edu	37	chr15	90348325	90348325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ataccaagacaccattggatGcctgcttctccacgtagtcg	8	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	90348325	90348325	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	69_37n	-1	known	missense	c.881	p.A294V	0.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	64	0	0	33	6	15.38	-	-	-	A	90348325	G	A	90348325	3	1	891	1	0	0	0	0	1	0	0	0	709	1319	46	4	2094	4	ANPEP	15	90348325	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	7108177	90348325	12183067	220	72456										
MAN2A2	0	genome.wustl.edu	37	chr15	91456857	91456857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccacaggtgcagccccgacGgtatctgaagaagctccccc	10	17	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	15	91456857	91456857	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	missense	c.2732	p.R911Q	0.998	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	18	0	0	15	5	25	-	-	-	A	91456857	G	A	91456857	3	1	891	1	0	0	0	0	1	0	0	0	9286	1116	39	1	2802	1	MAN2A2	15	91456857	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1108532	91456857	11074535	221	72457										
RPUSD1	0	genome.wustl.edu	37	chr16	837647	837647	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agtctcccgccacgccttgcTgtcaatgcgaacgtcccagt	9	16	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	837647	837647	T	C	SNP	RPUSD1	ENST00000569601	human	ensembl	69_37n	-1	putative	splice_site	c.1-2	e1-2	1.000	-	-	-	no_stop_codon	RPUSD1	HGNC	ENSG00000007376	14	0	0	11	4	26.67	-	-	-	C	837647	T	C	837647	5	2	891	1	0	0	0	0	0	0	1	0	13752	1580	55	5	867	5	RPUSD1	16	837647	Splice_Site	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		837647	89517106	222	72458										
CACNA1H	0	genome.wustl.edu	37	chr16	1248638	1248638	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcggatcctggtcactctgCtgctggatacgctgcccatg	12	13	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	1248638	1248638	C	G	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.667	p.L223V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	43	0	0	17	7	29.17	-	-	-	G	1248638	C	G	1248638	3	3	891	1	0	0	0	0	1	0	0	0	2570	796	28	4	685	4	CACNA1H	16	1248638	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	410991	1248638	89106115	223	72459										
SEC14L5	0	genome.wustl.edu	37	chr16	5046950	5046950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcgccagtccttgagctggcGcaagcagcaccaggtggatc	14	13	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	5046950	5046950	G	A	SNP	SEC14L5	ENST00000251170	human	ensembl	69_37n	1	known	missense	c.875	p.R292H	1.000	superfamily_CRAL/TRIO_N_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	51	0	0	31	6	16.22	-	-	-	A	5046950	G	A	5046950	3	1	891	1	0	0	0	0	1	0	0	0	14073	1087	38	1	901	1	SEC14L5	16	5046950	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3798312	5046950	85307803	224	72460										
ACSM5	0	genome.wustl.edu	37	chr16	20448431	20448431	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acttttacatcacaggggacCgagctcgcatggacaaggat	11	10	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	20448431	20448431	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	nonsense	c.1366	p.R456*	0.981	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	87	0	0	59	7	10.61	-	-	-	T	20448431	C	T	20448431	4	4	891	1	0	0	0	0	0	1	0	0	187	644	23	1	1404	1	ACSM5	16	20448431	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	15401481	20448431	69906322	225	72461										
SH2B1	0	genome.wustl.edu	37	chr16	28884971	28884971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccgtggttgagctggtccccGtggttgaattggaagaggcc	16	9	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	28884971	28884971	G	A	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	missense	c.2101	p.V701M	1.000	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	70	0	0	37	5	11.9	-	-	-	A	28884971	G	A	28884971	3	1	891	1	0	0	0	0	1	0	0	0	14315	1145	40	1	2288	1	SH2B1	16	28884971	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	8436540	28884971	61469782	226	72462										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53706790	53706792	+	In_Frame_Del	DEL	TTC	TTC	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttgggagcttacctcttctaTtcttctttcagaaaacttca							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	53706790	53706792	TTC	-	DEL	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	in_frame_del	c.1021_1019	p.R340in_frame_del	0.912:0.872:0.870	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	60	0	0	31	13	29.55	-	-	-	-	53706792	TTC	-	53706790	7	5	891	1	0	1	0	1	0	0	0	0	13636	1493	52	0	3006	0	RPGRIP1L	16	53706790	In_Frame_Del	DEL	TTC	TCGA-EW-A1IZ-01A-11D-A188-09	24821819	53706790	36647963	227	72463										
WWP2	0	genome.wustl.edu	37	chr16	69965781	69965781	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cgaggagggcctggactatgGgggcatcgccaggtgagctt	18	9	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	69965781	69965781	G	T	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	1	known	missense	c.1670	p.G557V	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	14	0	0	16	6	27.27	-	-	-	T	69965781	G	T	69965781	3	4	891	1	0	0	0	0	1	0	0	0	17513	1232	43	4	1732	4	WWP2	16	69965781	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	16258991	69965781	20388972	228	72464										
MBTPS1	0	genome.wustl.edu	37	chr16	84088175	84088175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtaccacaaagaaggccaggAccaccatggctcccaggaag	11	13	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	16	84088175	84088175	A	G	SNP	MBTPS1	ENST00000343411	human	ensembl	69_37n	-1	known	missense	c.3038	p.V1013A	1.000	NULL	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943	36	0	0	22	4	15.38	-	-	-	G	84088175	A	G	84088175	3	3	891	1	0	0	0	0	1	0	0	0	9432	275	10	5	124	5	MBTPS1	16	84088175	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	14122394	84088175	6266578	229	72465										
KIAA0664	0	genome.wustl.edu	37	chr17	2597292	2597292	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtagacgttgttaaacaggtTcagggcctcattgatgagct	12	7	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	2597292	2597292	T	C	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.3016	p.N1006D	1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	36	0	0	27	4	12.9	-	-	-	C	2597292	T	C	2597292	3	2	891	1	0	0	0	0	1	0	0	0	8241	1783	62	5	945	5	KIAA0664	17	2597292	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		2597292	78597918	230	72466										
ZZEF1	0	genome.wustl.edu	37	chr17	3919737	3919737	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccagcatgtcctctcggcaGccctggagcactttctgcag	10	16	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	3919737	3919737	G	A	SNP	ZZEF1	ENST00000381638	human	ensembl	69_37n	-1	known	silent	c.8025	p.G2675	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755	50	0	0	29	6	17.14	-	-	-	A	3919737	G	A	3919737	2	1	891	1	0	0	0	0	0	0	0	1	18346	958	34	4		4	ZZEF1	17	3919737	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1322445	3919737	77275473	231	72467										
MYH3	0	genome.wustl.edu	37	chr17	10549037	10549037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttgtaccttctgtgccatcCggctcggcctgctcctctcg	9	16	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	10549037	10549037	C	T	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.1128	p.P376	0.001	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	83	0	0	28	8	22.22	-	-	-	T	10549037	C	T	10549037	2	4	891	1	0	0	0	0	0	0	0	1	10108	639	23	1		1	MYH3	17	10549037	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	6629300	10549037	70646173	232	72468										
DNAH9	0	genome.wustl.edu	37	chr17	11584201	11584201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caattccacaaagaagccccGttcaggtatgggccgaacac	9	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	11584201	11584201	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.3738	p.P1246	0.830	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	41	0	0	25	5	16.67	-	-	-	A	11584201	G	A	11584201	2	1	891	1	0	0	0	0	0	0	0	1	4643	1132	40	1		1	DNAH9	17	11584201	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1035164	11584201	69611009	233	72469										
NCOR1	0	genome.wustl.edu	37	chr17	15995175	15995175	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtgatagctctatctacctAccttcccactctctgtttgg	7	13	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	15995175	15995175	A	G	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	splice_site	c.3016+2	e21+2	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027	70	0	0	46	7	13.21	-	-	-	G	15995175	A	G	15995175	5	3	891	1	0	0	0	0	0	0	1	0	10307	405	14	5	4404	5	NCOR1	17	15995175	Splice_Site	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	4410974	15995175	65200035	234	72470										
PIGS	0	genome.wustl.edu	37	chr17	26881988	26881988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgaccgagcccagagcagccGgtctagctcccaggtcatta	11	14	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	26881988	26881988	G	A	SNP	PIGS	ENST00000308360	human	ensembl	69_37n	-1	known	missense	c.1273	p.R425W	1.000	pfam_PtdIno-glycan_biosynth_class_S	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111	40	0	0	42	5	10.42	-	-	-	A	26881988	G	A	26881988	3	1	891	1	0	0	0	0	1	0	0	0	11972	1115	39	1	402	1	PIGS	17	26881988	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	10886813	26881988	54313222	235	72471										
PHF12	0	genome.wustl.edu	37	chr17	27239621	27239621	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtgagcccagtggccttgaAtctgtcaacggaggtcctat	13	10	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	27239621	27239621	A	T	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.1968	p.D656E	0.987	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	43	0	0	34	5	12.82	-	-	-	T	27239621	A	T	27239621	3	4	891	1	0	0	0	0	1	0	0	0	11897	98	4	5	1100	5	PHF12	17	27239621	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	357633	27239621	53955589	236	72472										
ZNF830	0	genome.wustl.edu	37	chr17	33289332	33289332	+	Frame_Shift_Del	DEL	T	T	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcggaagcgttaccggaaggTttttttgacgaccctgaggt							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	33289332	33289332	T	-	DEL	ZNF830	ENST00000361952	human	ensembl	69_37n	1	known	frame_shift_del	c.747	p.F251fs	0.993	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783	28	0	0	19	7	25	-	-	-	-	33289332	T	-	33289332	7	5	891	1	0	1	0	1	0	0	0	0	18277	1712	60	0	749	0	ZNF830	17	33289332	Frame_Shift_Del	DEL	T	TCGA-EW-A1IZ-01A-11D-A188-09	6049711	33289332	47905878	237	72473										
AP2B1	0	genome.wustl.edu	37	chr17	33953640	33953640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttttcattctccaccctcagCatctgtgagcgggtaactcc	7	14	4	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	33953640	33953640	C	T	SNP	AP2B1	ENST00000312678	human	ensembl	69_37n	1	known	silent	c.717	p.S239	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP2B1	HGNC	ENSG00000006125	20	0	0	26	7	21.21	-	-	-	T	33953640	C	T	33953640	2	4	891	1	0	0	0	0	0	0	0	1	742	724	25	4		4	AP2B1	17	33953640	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	664308	33953640	47241570	238	72474										
CDC6	0	genome.wustl.edu	37	chr17	38449856	38449857	+	Frame_Shift_Del	DEL	AT	AT	-													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gatgaggaaattggaaaaacAtatgactgcagagaagggcc							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	38449856	38449857	AT	-	DEL	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	frame_shift_del	c.809_810	p.M271fs	0.453:0.405	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	45	0	0	31	5	13.89	-	-	-	-	38449857	AT	-	38449856	7	5	891	1	0	1	0	1	0	0	0	0	3112	217	8	0	823	0	CDC6	17	38449856	Frame_Shift_Del	DEL	AT	TCGA-EW-A1IZ-01A-11D-A188-09	4496216	38449856	42745354	239	72475										
KRT40	0	genome.wustl.edu	37	chr17	39137136	39137136	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcagctgctccgcgctggaCagttgctgctgattcagctc	12	13	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	39137136	39137136	C	T	SNP	KRT40	ENST00000377755	human	ensembl	69_37n	-1	known	silent	c.876	p.L292	0.054	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT40	HGNC	ENSG00000204889	66	0	0	40	8	16.67	-	-	-	T	39137136	C	T	39137136	2	4	891	1	0	0	0	0	0	0	0	1	8531	465	17	4		4	KRT40	17	39137136	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	687280	39137136	42058074	240	72476										
KRT33B	0	genome.wustl.edu	37	chr17	39525757	39525757	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cggatgaggttctccagctcCgcgttgtcccgctccagctg	12	15	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	39525757	39525757	C	T	SNP	KRT33B	ENST00000251646	human	ensembl	69_37n	-1	known	silent	c.246	p.A82	0.741	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738	80	0	0	31	5	13.89	-	-	-	T	39525757	C	T	39525757	2	4	891	1	0	0	0	0	0	0	0	1	8523	639	23	1		1	KRT33B	17	39525757	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	388621	39525757	41669453	241	72477										
DNAJC7	0	genome.wustl.edu	37	chr17	40141457	40141457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggccttctcgtggtcaggagCcatcctgagagcctgtacga	13	12	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	40141457	40141457	C	T	SNP	DNAJC7	ENST00000457167	human	ensembl	69_37n	-1	known	missense	c.718	p.A240T	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DnaJ_N,superfamily_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC7	HGNC	ENSG00000168259	33	0	0	40	8	16.67	-	-	-	T	40141457	C	T	40141457	3	4	891	1	0	0	0	0	1	0	0	0	4689	739	26	4	798	4	DNAJC7	17	40141457	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	615700	40141457	41053753	242	72478										
BCAS3	0	genome.wustl.edu	37	chr17	58988000	58988000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gccatccacagtaattcacgGcggagtcctttggtcccagg	11	13	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	58988000	58988000	G	A	SNP	BCAS3	ENST00000390652	human	ensembl	69_37n	1	known	silent	c.930	p.R310	0.549	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376	42	0	0	45	6	11.54	-	-	-	A	58988000	G	A	58988000	2	1	891	1	0	0	0	0	0	0	0	1	1356	1190	42	4		4	BCAS3	17	58988000	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	18846543	58988000	22207210	243	72479										
TANC2	0	genome.wustl.edu	37	chr17	61176555	61176555	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggtggcatctccacagaaagCgactgtgcttttgagccaga	12	10	1	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	61176555	61176555	C	T	SNP	TANC2	ENST00000580466	human	ensembl	69_37n	1	novel	nonsense	c.76	p.R26*	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	50	0	0	30	7	18.92	-	-	-	T	61176555	C	T	61176555	4	4	891	1	0	0	0	0	0	1	0	0	15637	767	27	1	169	1	TANC2	17	61176555	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	2188555	61176555	20018655	244	72480										
TANC2	0	genome.wustl.edu	37	chr17	61498332	61498332	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cggttggtttatcaagggtcAattgggggaatcgtagggga	17	4	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	61498332	61498332	A	G	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	silent	c.4989	p.S1663	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	43	0	0	36	8	18.18	-	-	-	G	61498332	A	G	61498332	2	3	891	1	0	0	0	0	0	0	0	1	15637	117	5	5		5	TANC2	17	61498332	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	321777	61498332	19696878	245	72481										
EIF4A3	0	genome.wustl.edu	37	chr17	78109862	78109862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gctcgatatctctgaggatgCggatgtcgtcattctttaca	10	9	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	17	78109862	78109862	C	T	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.1160	p.R387H	0.998	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	75	0	0	46	13	22.03	-	-	-	T	78109862	C	T	78109862	3	4	891	1	0	0	0	0	1	0	0	0	5063	768	27	1	83	1	EIF4A3	17	78109862	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	16611530	78109862	3085348	246	72482										
LPIN2	0	genome.wustl.edu	37	chr18	2929124	2929124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tccagggttttctgcaaattCgtgataagtaatgatatgct	9	6	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	2929124	2929124	C	T	SNP	LPIN2	ENST00000261596	human	ensembl	69_37n	-1	known	missense	c.1489	p.E497K	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577	95	0	0	61	13	17.57	-	-	-	T	2929124	C	T	2929124	3	4	891	1	0	0	0	0	1	0	0	0	8985	893	31	1	1245	1	LPIN2	18	2929124	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		2929124	75148124	247	72483										
ROCK1	0	genome.wustl.edu	37	chr18	18539823	18539823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tatgtccaataccatagatgGattggattgctccttatctt	7	8	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	18539823	18539823	G	A	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.3490	p.P1164S	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	54	0	0	61	13	17.57	-	-	-	A	18539823	G	A	18539823	3	1	891	1	0	0	0	0	1	0	0	0	13603	1174	41	2	594	2	ROCK1	18	18539823	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	15610699	18539823	59537425	248	72484										
CABYR	0	genome.wustl.edu	37	chr18	21735866	21735866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgtgccaggcactgagcaaaCggaagcagttggtggtcttt	14	8	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	21735866	21735866	C	T	SNP	CABYR	ENST00000463087	human	ensembl	69_37n	1	known	missense	c.401	p.T134M	0.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	31	0	0	29	7	19.44	-	-	-	T	21735866	C	T	21735866	3	4	891	1	0	0	0	0	1	0	0	0	2561	536	19	1	411	1	CABYR	18	21735866	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	3196043	21735866	56341382	249	72485										
KLHL14	0	genome.wustl.edu	37	chr18	30267118	30267118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgcaagaaataaacacttacCtttcctgcatgggtggaagt	9	8	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	30267118	30267118	C	A	SNP	KLHL14	ENST00000359358	human	ensembl	69_37n	-1	known	missense	c.1238	p.R413I	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	60	0	0	42	7	14.29	-	-	-	A	30267118	C	A	30267118	3	1	891	1	0	0	0	0	1	0	0	0	8423	695	24	4	668	4	KLHL14	18	30267118	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	8531252	30267118	47810130	250	72486										
SETBP1	0	genome.wustl.edu	37	chr18	42532994	42532994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaacaactttgaggtggacaCcctgtctacactgtcacttt	8	11	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	42532994	42532994	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	69_37n	1	known	missense	c.3689	p.T1230I	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	32	0	0	27	9	25	-	-	-	T	42532994	C	T	42532994	3	4	891	1	0	0	0	0	1	0	0	0	14217	507	18	4	3892	4	SETBP1	18	42532994	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	12265876	42532994	35544254	251	72487										
MBD1	0	genome.wustl.edu	37	chr18	47800631	47800631	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cccccgaatttgggcttgtcGcagcagaagtcgcagcggcc	13	14	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	47800631	47800631	G	A	SNP	MBD1	ENST00000424334	human	ensembl	69_37n	-1	known	silent	c.1224	p.C408	0.854	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	23	0	0	17	6	26.09	-	-	-	A	47800631	G	A	47800631	2	1	891	1	0	0	0	0	0	0	0	1	9413	1079	38	1		1	MBD1	18	47800631	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	5267637	47800631	30276617	252	72488										
ZCCHC2	0	genome.wustl.edu	37	chr18	60207019	60207019	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggcacctcacagagctcagCgagaaggtatgctctctttt	10	11	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	18	60207019	60207019	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	1	known	nonsense	c.1045	p.R349*	1.000	superfamily_Phox	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	51	0	0	59	9	13.24	-	-	-	T	60207019	C	T	60207019	4	4	891	1	0	0	0	0	0	1	0	0	17683	760	27	1	1051	1	ZCCHC2	18	60207019	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	12406388	60207019	17870229	253	72489										
DOT1L	0	genome.wustl.edu	37	chr19	2185914	2185914	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gagaattacgttttaattgaCtatgacaccaaaaggtaagc	8	6	0	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	2185914	2185914	C	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.186	p.D62E	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	76	0	0	51	7	11.86	-	-	-	A	2185914	C	A	2185914	3	1	891	1	0	0	0	0	1	0	0	0	4744	564	20	4	196	4	DOT1L	19	2185914	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		2185914	56943069	254	72490										
FUT5	0	genome.wustl.edu	37	chr19	5867314	5867314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aaccagatccagcgctgcccCtgcggcctggtggggggcgg	17	14	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	5867314	5867314	C	A	SNP	FUT5	ENST00000252675	human	ensembl	69_37n	-1	known	missense	c.423	p.Q141H	0.002	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	36	0	0	11	4	26.67	-	-	-	A	5867314	C	A	5867314	3	1	891	1	0	0	0	0	1	0	0	0	6156	680	24	4	705	4	FUT5	19	5867314	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	3681400	5867314	53261669	255	72491										
WTIP	0	genome.wustl.edu	37	chr19	34991089	34991089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccgttgctatcccctggcggGccacctactgtgtcgtcgtt	11	15	0	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	34991089	34991089	G	A	SNP	WTIP	ENST00000270288	human	ensembl	69_37n	1	known	missense	c.1880	p.G627D	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	WTIP	HGNC	ENSG00000142279	42	0	0	18	5	21.74	-	-	-	A	34991089	G	A	34991089	3	1	891	1	0	0	0	0	1	0	0	0	17507	1203	42	4	1238	4	WTIP	19	34991089	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	29123775	34991089	24137894	256	72492										
DMKN	0	genome.wustl.edu	37	chr19	35994348	35994348	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggatgcgagagcttctctggTcctgggcaaagaaacaggtt	14	8	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	35994348	35994348	T	C	SNP	DMKN	ENST00000440396	human	ensembl	69_37n	-1	known	missense	c.1226	p.D409G	0.998	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249	96	0	0	48	12	20	-	-	-	C	35994348	T	C	35994348	3	2	891	1	0	0	0	0	1	0	0	0	4618	1681	58	5	480	5	DMKN	19	35994348	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	1003259	35994348	23134635	257	72493										
ARHGAP33	0	genome.wustl.edu	37	chr19	36278850	36278850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gcttggccaatcacccccacTccacaggtcccccgacttcc	6	21	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	36278850	36278850	T	C	SNP	ARHGAP33	ENST00000007510	human	ensembl	69_37n	1	known	missense	c.3383	p.L1128P	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	17	0	0	9	4	30.77	-	-	-	C	36278850	T	C	36278850	3	2	891	1	0	0	0	0	1	0	0	0	884	1551	54	5	3465	5	ARHGAP33	19	36278850	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	284502	36278850	22850133	258	72494										
RYR1	0	genome.wustl.edu	37	chr19	38987176	38987176	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gctggagaacagtggcatcgGcctgggtgagaacccccgag	16	11	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	38987176	38987176	G	A	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.6791	p.G2264D	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	23	0	0	10	6	37.5	-	-	-	A	38987176	G	A	38987176	3	1	891	1	0	0	0	0	1	0	0	0	13854	1203	42	4	6953	4	RYR1	19	38987176	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2708326	38987176	20141807	259	72495										
FBXO17	0	genome.wustl.edu	37	chr19	39433304	39433305	+	Frame_Shift_Ins	INS	-	-	C													0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtcacaagggcgccatagtgINSccccacccaggaactcacgt							TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	39433304	39433305	-	C	INS	FBXO17	ENST00000292852	human	ensembl	69_37n	-1	known	frame_shift_ins	c.781_780	p.H260fs	0.984:0.958	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO17	HGNC	ENSG00000104835	26	0	0	13	2	13.33	-	-	-	C	39433305	-	C	39433304	7	5	891	1	0	1	1	0	0	0	0	0	5776	1319	46	0	59	0	FBXO17	19	39433304	Frame_Shift_Ins	INS	-	TCGA-EW-A1IZ-01A-11D-A188-09	446128	39433304	19695679	260	72496										
ZNF780B	0	genome.wustl.edu	37	chr19	40542427	40542427	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttctaaaataaaaggcctcGaggccaagtgttttacttat	7	7	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	40542427	40542427	G	A	SNP	ZNF780B	ENST00000434248	human	ensembl	69_37n	-1	known	silent	c.339	p.L113	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	58	0	0	54	12	18.18	-	-	-	A	40542427	G	A	40542427	2	1	891	1	0	0	0	0	0	0	0	1	18246	1045	37	1		1	ZNF780B	19	40542427	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	1109123	40542427	18586556	261	72497										
MEGF8	0	genome.wustl.edu	37	chr19	42853706	42853706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggagacgcggcggctgcagcGccctgggtctgctcgcctct	16	15	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	42853706	42853706	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.2354	p.R785H	0.996	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	31	0	0	23	6	20.69	-	-	-	A	42853706	G	A	42853706	3	1	891	1	0	0	0	0	1	0	0	0	9534	1087	38	1	2203	1	MEGF8	19	42853706	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	2311279	42853706	16275277	262	72498										
SAE1	0	genome.wustl.edu	37	chr19	47653513	47653513	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttcgtactgggtctgttggcCgaaatagggctgaagcctct	13	9	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	47653513	47653513	C	T	SNP	SAE1	ENST00000270225	human	ensembl	69_37n	1	known	nonsense	c.265	p.R89*	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230	62	0	0	40	6	13.04	-	-	-	T	47653513	C	T	47653513	4	4	891	1	0	0	0	0	0	1	0	0	13891	644	23	1	275	1	SAE1	19	47653513	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4799807	47653513	11475470	263	72499										
DHX34	0	genome.wustl.edu	37	chr19	47884112	47884112	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggctcacagggctagaagtcCagaacatgtatgtgggaccc	13	10	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	47884112	47884112	C	T	SNP	DHX34	ENST00000328771	human	ensembl	69_37n	1	known	nonsense	c.3022	p.Q1008*	0.997	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815	60	0	0	29	5	14.71	-	-	-	T	47884112	C	T	47884112	4	4	891	1	0	0	0	0	0	1	0	0	4543	595	21	4	3076	4	DHX34	19	47884112	Nonsense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	230599	47884112	11244871	264	72500										
PPFIA3	0	genome.wustl.edu	37	chr19	49651945	49651945	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgagtctacattatgggattAtgtgcctgaaacggctcaac	10	8	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	49651945	49651945	A	G	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	missense	c.3034	p.M1012V	1.000	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	59	0	0	36	7	16.28	-	-	-	G	49651945	A	G	49651945	3	3	891	1	0	0	0	0	1	0	0	0	12384	449	16	5	3128	5	PPFIA3	19	49651945	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	1767833	49651945	9477038	265	72501										
ZNF415	0	genome.wustl.edu	37	chr19	53612925	53612925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tcctatacctcttctatcgcGttggtctctcctacaagtaa	5	13	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	53612925	53612925	G	A	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	missense	c.517	p.R173C	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	74	0	0	38	8	17.39	-	-	-	A	53612925	G	A	53612925	3	1	891	1	0	0	0	0	1	0	0	0	17988	1145	40	1	1298	1	ZNF415	19	53612925	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	3960980	53612925	5516058	266	72502										
ZNF132	0	genome.wustl.edu	37	chr19	58946279	58946279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttagagctcttcataagtgCgtccctgtccttgtaccatc	7	12	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	19	58946279	58946279	C	T	SNP	ZNF132	ENST00000254166	human	ensembl	69_37n	-1	known	missense	c.532	p.A178T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849	56	0	0	33	10	23.26	-	-	-	T	58946279	C	T	58946279	3	4	891	1	0	0	0	0	1	0	0	0	17818	768	27	1	1592	1	ZNF132	19	58946279	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5333354	58946279	182704	267	72503										
VPS16	0	genome.wustl.edu	37	chr20	2840965	2840965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	caggaagatggtgctgtactGgtttatgggcttcatggtga	15	5	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	20	2840965	2840965	G	T	SNP	VPS16	ENST00000380445	human	ensembl	69_37n	1	known	silent	c.321	p.L107	0.990	pfam_Vps16_N,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	122	1	0.81	50	9	15.25	-	-	-	T	2840965	G	T	2840965	2	4	891	1	0	0	0	0	0	0	0	1	17290	1335	47	4		4	VPS16	20	2840965	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09		2840965	60184555	268	72504										
REM1	0	genome.wustl.edu	37	chr20	30064292	30064292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agcaaagacccctctgcaccGgcgagccagcaccccactgc	9	19	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	20	30064292	30064292	G	A	SNP	REM1	ENST00000201979	human	ensembl	69_37n	1	known	missense	c.44	p.R15Q	0.496	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320	46	0	0	23	6	20.69	-	-	-	A	30064292	G	A	30064292	3	1	891	1	0	0	0	0	1	0	0	0	13305	1116	39	1	46	1	REM1	20	30064292	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	27223327	30064292	32961228	269	72505										
ZMYND8	0	genome.wustl.edu	37	chr20	45855964	45855964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acctaagttgtgtttcatttCggagagctcttgctggtgca	11	8	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	20	45855964	45855964	C	T	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.3019	p.E1007K	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	120	0	0	55	16	22.54	-	-	-	T	45855964	C	T	45855964	3	4	891	1	0	0	0	0	1	0	0	0	17807	893	31	1	730	1	ZMYND8	20	45855964	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	15791672	45855964	17169556	270	72506										
RAE1	0	genome.wustl.edu	37	chr20	55940493	55940493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtaaccaagcgatacagatcGcacaggtaacagaagcctct	9	11	1	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	20	55940493	55940493	G	A	SNP	RAE1	ENST00000371242	human	ensembl	69_37n	1	known	missense	c.370	p.A124T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146	31	0	0	28	5	15.15	-	-	-	A	55940493	G	A	55940493	3	1	891	1	0	0	0	0	1	0	0	0	13081	1087	38	1	384	1	RAE1	20	55940493	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	10084529	55940493	7085027	271	72507										
BRWD1	0	genome.wustl.edu	37	chr21	40570950	40570950	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	attgtatttcctaccaccagAtcttcctggttcagaatctg	6	11	3	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	21	40570950	40570950	A	T	SNP	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	missense	c.5392	p.S1798T	0.004	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	58	0	0	55	8	12.7	-	-	-	T	40570950	A	T	40570950	3	4	891	1	0	0	0	0	1	0	0	0	1533	333	12	5	1821	5	BRWD1	21	40570950	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09		40570950	7558945	272	72508										
IL17RA	0	genome.wustl.edu	37	chr22	17583062	17583062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ccccaacatcaccgtggagaCcctggaggcccaccagctgc	10	18	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	17583062	17583062	C	T	SNP	IL17RA	ENST00000319363	human	ensembl	69_37n	1	known	missense	c.632	p.T211I	0.000	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663	56	0	0	31	8	20.51	-	-	-	T	17583062	C	T	17583062	3	4	891	1	0	0	0	0	1	0	0	0	7693	507	18	4	658	4	IL17RA	22	17583062	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09		17583062	33721504	273	72509										
SLC25A18	0	genome.wustl.edu	37	chr22	18070764	18070764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tggggttcaacgagctcgccGgtaaggcgtcctttgcacat	13	11	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	18070764	18070764	G	A	SNP	SLC25A18	ENST00000327451	human	ensembl	69_37n	1	known	missense	c.649	p.G217S	0.742	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902	89	0	0	49	9	15.52	-	-	-	A	18070764	G	A	18070764	3	1	891	1	0	0	0	0	1	0	0	0	14569	1116	39	1	675	1	SLC25A18	22	18070764	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	487702	18070764	33233802	274	72510										
SUSD2	0	genome.wustl.edu	37	chr22	24584283	24584283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctatgtgctgctgcgccgcaGgaagggcaacacgtgagacc	14	12	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	24584283	24584283	G	T	SNP	SUSD2	ENST00000358321	human	ensembl	69_37n	1	known	missense	c.2432	p.R811M	0.398	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Complement_control_module,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994	33	0	0	21	8	27.59	-	-	-	T	24584283	G	T	24584283	3	4	891	1	0	0	0	0	1	0	0	0	15499	1000	35	4	2486	4	SUSD2	22	24584283	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	6513519	24584283	26720283	275	72511										
TNRC6B	0	genome.wustl.edu	37	chr22	40717093	40717093	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	atgaatgtcattactccttaGattgatgggtcaaccttgag	9	7	2	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	40717093	40717093	G	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	splice_site	c.4975-1	e22-1	1.000	-	-	-	no_errors	TNRC6B	HGNC	ENSG00000100354	31	0	0	32	8	20	-	-	-	T	40717093	G	T	40717093	5	4	891	1	0	0	0	0	0	0	1	0	16436	956	33	2	5181	2	TNRC6B	22	40717093	Splice_Site	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	16132810	40717093	10587473	276	72512										
ADSL	0	genome.wustl.edu	37	chr22	40755272	40755272	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tttctttccaaggtagagcaGcttgacaagatggtgacaga	11	7	1	5			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	40755272	40755272	G	A	SNP	ADSL	ENST00000454266	human	ensembl	69_37n	1	known	silent	c.705	p.Q235	0.999	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Lyase1_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,prints_D_crystallin,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900	131	0	0	56	16	22.22	-	-	-	A	40755272	G	A	40755272	2	1	891	1	0	0	0	0	0	0	0	1	346	962	34	4		4	ADSL	22	40755272	Silent	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	38179	40755272	10549294	277	72513										
SAMM50	0	genome.wustl.edu	37	chr22	44385035	44385035	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	actgggccggcggcctgcacCtctacaccccattacctttc	8	18	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	44385035	44385035	C	A	SNP	SAMM50	ENST00000350028	human	ensembl	69_37n	1	known	missense	c.1120	p.L374I	1.000	pfam_Bac_surfAg_D15	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347	59	0	0	48	12	20	-	-	-	A	44385035	C	A	44385035	3	1	891	1	0	0	0	0	1	0	0	0	13915	681	24	4	1170	4	SAMM50	22	44385035	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	3629763	44385035	6919531	278	72514										
TTLL8	0	genome.wustl.edu	37	chr22	50471764	50471764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gaacttggtgtcacagatgaGcagcggcgtctcgatgtact	13	9	2	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	50471764	50471764	G	A	SNP	TTLL8	ENST00000266182	human	ensembl	69_37n	-1	known	missense	c.1150	p.L384F	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL8	HGNC	ENSG00000138892	23	0	0	19	6	24	-	-	-	A	50471764	G	A	50471764	3	1	891	1	0	0	0	0	1	0	0	0	16830	971	34	4	1373	4	TTLL8	22	50471764	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	6086729	50471764	832802	279	72515										
MOV10L1	0	genome.wustl.edu	37	chr22	50584153	50584153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtcaaaccgtattgcagagaCggagaagacatctggaaagc	12	8	2	3			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	22	50584153	50584153	C	T	SNP	MOV10L1	ENST00000262794	human	ensembl	69_37n	1	known	silent	c.2541	p.D847	0.077	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	MOV10L1	HGNC	ENSG00000073146	50	0	0	26	5	16.13	-	-	-	T	50584153	C	T	50584153	2	4	891	1	0	0	0	0	0	0	0	1	9791	535	19	1		1	MOV10L1	22	50584153	Silent	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	112389	50584153	720413	280	72516										
GPM6B	0	genome.wustl.edu	37	chrX	13835019	13835019	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ctgcagtttccatggctggcTtcataccatccaccaaaaat	6	13	1	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	13835019	13835019	T	C	SNP	GPM6B	ENST00000316715	human	ensembl	69_37n	-1	known	missense	c.5	p.K2R	1.000	NULL	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653	173	0	0	78	12	13.33	-	-	-	C	13835019	T	C	13835019	3	2	891	1	0	0	0	0	1	0	0	0	6666	1609	56	5	1098	5	GPM6B	23	13835019	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09		13835019	141435541	281	72517										
RPS6KA3	0	genome.wustl.edu	37	chrX	20213261	20213261	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ttttgtccgaactcggtctcGaactataaaagattgtatgt	8	7	1	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	20213261	20213261	G	A	SNP	RPS6KA3	ENST00000379565	human	ensembl	69_37n	-1	known	nonsense	c.328	p.R110*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189	82	0	0	54	11	16.92	-	-	-	A	20213261	G	A	20213261	4	1	891	1	0	0	0	0	0	1	0	0	13738	1066	37	1	1966	1	RPS6KA3	23	20213261	Nonsense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	6378242	20213261	135057299	282	72518										
TBC1D25	0	genome.wustl.edu	37	chrX	48398283	48398283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	ggccgctgaggaggaggagcGagaggtggtgcgggtccgag	23	7	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	48398283	48398283	G	A	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.98	p.R33Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	13	0	0	12	4	25	-	-	-	A	48398283	G	A	48398283	3	1	891	1	0	0	0	0	1	0	0	0	15707	1058	37	1	100	1	TBC1D25	23	48398283	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	28185022	48398283	106872277	283	72519										
HUWE1	0	genome.wustl.edu	37	chrX	53589093	53589093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	tgatcatcttcctcatcttcCtcctcctcctcctcttcatc	1	19	6	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	53589093	53589093	C	T	SNP	HUWE1	ENST00000427052	human	ensembl	69_37n	-1	known	missense	c.4417	p.G1473R	1.000	NULL	pfam_HECT,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUWE1	HGNC	ENSG00000086758	72	0	0	36	7	16.28	-	-	-	T	53589093	C	T	53589093	3	4	891	1	0	0	0	0	1	0	0	0	7515	680	24	4	5931	4	HUWE1	23	53589093	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	5190810	53589093	101681467	284	72520										
FAM120C	0	genome.wustl.edu	37	chrX	54112279	54112279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	acggaagtagagcagaaggcGgtggatgattcatgttgact	15	5	1	4			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	54112279	54112279	G	A	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2708	p.P903L	0.948	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	69	0	0	32	14	30.43	-	-	-	A	54112279	G	A	54112279	3	1	891	1	0	0	0	0	1	0	0	0	5458	1116	39	1	598	1	FAM120C	23	54112279	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	523186	54112279	101158281	285	72521										
APEX2	0	genome.wustl.edu	37	chrX	55029489	55029489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agcggctagtctttaagatgCgcttctatcgtttgctgcaa	10	9	2	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	55029489	55029489	C	T	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	1	known	missense	c.517	p.R173C	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	59	0	0	24	8	24.24	-	-	-	T	55029489	C	T	55029489	3	4	891	1	0	0	0	0	1	0	0	0	771	768	27	1	531	1	APEX2	23	55029489	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	917210	55029489	100241071	286	72522										
OPHN1	0	genome.wustl.edu	37	chrX	67273542	67273542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aatatctggctttggttctgGcttttggggagtagctgccc	13	8	2	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	67273542	67273542	G	T	SNP	OPHN1	ENST00000355520	human	ensembl	69_37n	-1	known	missense	c.2269	p.P757T	0.974	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	98	0	0	38	11	22.45	-	-	-	T	67273542	G	T	67273542	3	4	891	1	0	0	0	0	1	0	0	0	10948	1203	42	4	151	4	OPHN1	23	67273542	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	12244053	67273542	87997018	287	72523										
RGAG4	0	genome.wustl.edu	37	chrX	71350651	71350651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	agctgccgagggtacagtggCcctgcttgagcttgcgaatg	15	10	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	71350651	71350651	C	T	SNP	RGAG4	ENST00000479991	human	ensembl	69_37n	-1	known	missense	c.740	p.G247D	0.896	pfam_Retrotrans_gag	pfam_Retrotrans_gag	-	no_errors	RGAG4	HGNC	ENSG00000242732	37	0	0	24	4	14.29	-	-	-	T	71350651	C	T	71350651	3	4	891	1	0	0	0	0	1	0	0	0	13358	739	26	4	973	4	RGAG4	23	71350651	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	4077109	71350651	83919909	288	72524										
CITED1	0	genome.wustl.edu	37	chrX	71521829	71521829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cgggttggcctggagtggcaGcagccatcccctgatactgg	15	12	0	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	71521829	71521829	G	A	SNP	CITED1	ENST00000431381	human	ensembl	69_37n	-1	known	missense	c.404	p.A135V	0.003	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931	47	0	0	36	4	10	-	-	-	A	71521829	G	A	71521829	3	1	891	1	0	0	0	0	1	0	0	0	3469	971	34	4	259	4	CITED1	23	71521829	Missense_Mutation	SNP	G	TCGA-EW-A1IZ-01A-11D-A188-09	171178	71521829	83748731	289	72525										
NXT2	0	genome.wustl.edu	37	chrX	108780219	108780219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gccgacactgccagaacacaCtgctacaaggtcccagatgg	10	14	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	108780219	108780219	C	T	SNP	NXT2	ENST00000218004	human	ensembl	69_37n	1	known	missense	c.149	p.T50I	0.000	NULL	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT2	HGNC	ENSG00000101888	46	0	0	17	4	19.05	-	-	-	T	108780219	C	T	108780219	3	4	891	1	0	0	0	0	1	0	0	0	10868	565	20	4	155	4	NXT2	23	108780219	Missense_Mutation	SNP	C	TCGA-EW-A1IZ-01A-11D-A188-09	37258390	108780219	46490341	290	72526										
GPR112	0	genome.wustl.edu	37	chrX	135441601	135441601	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	gtaaactgtgaacacgttgcAgtgaaaaaactaggtaattt	9	5	0	2			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	135441601	135441601	A	G	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	silent	c.7131	p.A2377	0.569	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	51	0	0	40	10	20	-	-	-	G	135441601	A	G	135441601	2	3	891	1	0	0	0	0	0	0	0	1	6679	175	7	5		5	GPR112	23	135441601	Silent	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	26661382	135441601	19828959	291	72527										
TMEM185A	0	genome.wustl.edu	37	chrX	148690503	148690503	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	aacatggctttaaactccacAcacgtttctccttctgctct	4	14	3	0			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	148690503	148690503	A	G	SNP	TMEM185A	ENST00000502900	human	ensembl	69_37n	-1	known	missense	c.229	p.C77R	1.000	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM185A	HGNC	ENSG00000155984	54	0	0	28	4	12.5	-	-	-	G	148690503	A	G	148690503	3	3	891	1	0	0	0	0	1	0	0	0	16202	157	6	5	838	5	TMEM185A	23	148690503	Missense_Mutation	SNP	A	TCGA-EW-A1IZ-01A-11D-A188-09	13248902	148690503	6580057	292	72528										
MPP1	0	genome.wustl.edu	37	chrX	154007615	154007615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0170648464163823	5	1	0.218518772005871	0	0.221104792976354	0.0151515151515152	0.179340149574026	0	cagagtccttctgcagctgcTgcagggcttctgtctgcaaa	11	12	3	1			TCGA-EW-A1IZ-01A-11D-A188-09	TCGA-EW-A1IZ-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	18db4143-48cc-424c-8d23-46cf23056528	e528b9ef-53e6-49d4-a86c-648a752d1835	X	154007615	154007615	T	C	SNP	MPP1	ENST00000369534	human	ensembl	69_37n	-1	known	missense	c.1238	p.Q413R	1.000	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP1	HGNC	ENSG00000130830	27	0	0	25	5	16.67	-	-	-	C	154007615	T	C	154007615	3	2	891	1	0	0	0	0	1	0	0	0	9805	1580	55	5	166	5	MPP1	23	154007615	Missense_Mutation	SNP	T	TCGA-EW-A1IZ-01A-11D-A188-09	5317112	154007615	1262945	293	72529										
DPT	0	genome.wustl.edu	37	chr1	168683522	168683522	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actgccactcccgatccagcActgactcgaagtagcggctc	9	16	0	1			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	168683522	168683522	A	T	SNP	DPT	ENST00000367817	human	ensembl	69_37n	-1	known	missense	c.368	p.V123E	1.000	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196	54	0	0	58	12	16.9	-	-	-	T	168683522	A	T	168683522	3	4	892	1	0	0	0	0	1	0	0	0	4774	159	6	5	249	5	DPT	1	168683522	Missense_Mutation	SNP	A	TCGA-EW-A1J1-01A-11D-A188-09		168683522	80567099	1	72530										
NAV1	0	genome.wustl.edu	37	chr1	201757631	201757631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaccacgccaagaatcaccCgctccaacagcatccccacc	4	22	1	1			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	201757631	201757631	C	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	1	known	missense	c.3031	p.R1011C	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	47	0	0	98	24	19.67	-	-	-	T	201757631	C	T	201757631	3	4	892	1	0	0	0	0	1	0	0	0	10255	652	23	1	3126	1	NAV1	1	201757631	Missense_Mutation	SNP	C	TCGA-EW-A1J1-01A-11D-A188-09	33074109	201757631	47492990	2	72531										
SOS1	0	genome.wustl.edu	37	chr2	39239446	39239446	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cttgcaatttttttcctttgGattattttagtgatggattc	7	5	0	1			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	39239446	39239446	G	A	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	silent	c.2211	p.I737	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	158	0	0	173	34	16.43	-	-	-	A	39239446	G	A	39239446	2	1	892	1	0	0	0	0	0	0	0	1	15025	1164	41	2		2	SOS1	2	39239446	Silent	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		39239446	203959927	3	72532										
SNRNP200	0	genome.wustl.edu	37	chr2	96959238	96959238	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctgtcatcgtggagaagatGaatctcatcctacggaattg	10	8	3	3			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	96959238	96959238	G	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.1852	p.H618N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	44	0	0	35	4	10.26	-	-	-	T	96959238	G	T	96959238	3	4	892	1	0	0	0	0	1	0	0	0	14941	1290	45	2	4682	2	SNRNP200	2	96959238	Missense_Mutation	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09	57719792	96959238	146240135	4	72533										
PIK3CA	0	genome.wustl.edu	37	chr3	178952075	178952075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtatttcatgaaacaaatgAatgatgcacatcatggtggc	9	6	2	3			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	3	178952075	178952075	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3130	p.N1044Y	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	65	33	33.67	-	-	-	T	178952075	A	T	178952075	3	4	892	1	0	0	0	0	1	0	0	0	11987	246	9	5	3208	5	PIK3CA	3	178952075	Missense_Mutation	SNP	A	TCGA-EW-A1J1-01A-11D-A188-09		178952075	19070355	5	72534										
MAP3K1	0	genome.wustl.edu	37	chr5	56177010	56177011	+	Frame_Shift_Ins	INS	-	-	ATAG													0	0	1	0	0	0	1	1	0	ttcttggccgcctttgtcttINSatagatagactgttgttgga							TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	56177010	56177011	-	ATAG	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.2280_2281	p.L763fs	0.954:0.994	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	203	0	0	63	80	55.94	-	-	-	ATAG	56177011	-	ATAG	56177010	7	5	892	1	0	1	1	0	0	0	0	0	9314	1741	61	0	2330	0	MAP3K1	5	56177010	Frame_Shift_Ins	INS	-	TCGA-EW-A1J1-01A-11D-A188-09		56177010	124738250	6	72535										
NIPAL4	0	genome.wustl.edu	37	chr5	156899736	156899736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgctgtggacattgcaggcaCcctctcgggctttgtcacca	11	13	2	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	156899736	156899736	C	T	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	1	known	missense	c.1169	p.T390I	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	56	0	0	74	27	26.73	-	-	-	T	156899736	C	T	156899736	3	4	892	1	0	0	0	0	1	0	0	0	10499	507	18	4	1191	4	NIPAL4	5	156899736	Missense_Mutation	SNP	C	TCGA-EW-A1J1-01A-11D-A188-09	100722726	156899736	24015524	7	72536										
FGF18	0	genome.wustl.edu	37	chr5	170883561	170883561	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	agcccgatggcaccagcaagGagtgtgtgttcatcgagaag	14	9	1	1			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	170883561	170883561	G	C	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	missense	c.376	p.E126Q	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	13	0	0	36	7	16.28	-	-	-	C	170883561	G	C	170883561	3	2	892	1	0	0	0	0	1	0	0	0	5892	1175	41	2	394	2	FGF18	5	170883561	Missense_Mutation	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09	13983825	170883561	10031699	8	72537										
ALDH5A1	0	genome.wustl.edu	37	chr6	24528350	24528350	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aatgtcacccaggacatgctGtgcactcatgaagagacttt	9	10	2	2			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	24528350	24528350	G	C	SNP	ALDH5A1	ENST00000348925	human	ensembl	69_37n	1	known	silent	c.1338	p.L446	0.497	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294	48	0	0	26	11	29.73	-	-	-	C	24528350	G	C	24528350	2	2	892	1	0	0	0	0	0	0	0	1	502	1364	48	4		4	ALDH5A1	6	24528350	Silent	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		24528350	146586717	9	72538										
TREM1	0	genome.wustl.edu	37	chr6	41250151	41250151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acccttggtcaccaccaagcGgatgcgatcgaacagcatgt	10	13	1	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	41250151	41250151	G	T	SNP	TREM1	ENST00000244709	human	ensembl	69_37n	-1	known	missense	c.388	p.R130S	0.058	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	40	0	0	42	15	26.32	-	-	-	T	41250151	G	T	41250151	3	4	892	1	0	0	0	0	1	0	0	0	16566	1116	39	3	328	3	TREM1	6	41250151	Missense_Mutation	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09	16721801	41250151	129864916	10	72539										
SF1	0	genome.wustl.edu	37	chr11	64535092	64535092	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gggtgggggccctggttcatCggtggtggtggtggctgcat	21	7	1	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64535092	64535092	C	T	SNP	SF1	ENST00000377390	human	ensembl	69_37n	-1	known	silent	c.1293	p.P431	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	29	0	0	65	9	12.16	-	-	-	T	64535092	C	T	64535092	2	4	892	1	0	0	0	0	0	0	0	1	14233	871	31	1		1	SF1	11	64535092	Silent	SNP	C	TCGA-EW-A1J1-01A-11D-A188-09		64535092	70471424	11	72540										
EHD1	0	genome.wustl.edu	37	chr11	64645813	64645813	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggcgagtggaactcgtggaAgcggtagtgctcctccaggg	18	9	0	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64645813	64645813	A	C	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	missense	c.124	p.F42V	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	26	0	0	92	18	16.22	-	-	-	C	64645813	A	C	64645813	3	2	892	1	0	0	0	0	1	0	0	0	5012	72	3	5	1500	5	EHD1	11	64645813	Missense_Mutation	SNP	A	TCGA-EW-A1J1-01A-11D-A188-09	110721	64645813	70360703	12	72541										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100452034	100452034	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgtagtttaagatactactTgaatctgtataaaatgaatc	6	5	1	3			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	100452034	100452034	T	A	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	silent	c.3021	p.S1007	0.297	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	55	0	0	53	12	18.46	-	-	-	A	100452034	T	A	100452034	2	1	892	1	0	0	0	0	0	0	0	1	17066	1799	63	5		5	UHRF1BP1L	12	100452034	Silent	SNP	T	TCGA-EW-A1J1-01A-11D-A188-09		100452034	33399861	13	72542										
ATP2A2	0	genome.wustl.edu	37	chr12	110780236	110780236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgctacctcatctcgtccaaCgtcggggaagttgtctggta	11	12	3	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	110780236	110780236	C	T	SNP	ATP2A2	ENST00000548169	human	ensembl	69_37n	1	novel	missense	c.1972	p.R658C	0.974	tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP2A2	HGNC	ENSG00000174437	76	0	0	94	68	41.98	-	-	-	T	110780236	C	T	110780236	3	4	892	1	0	0	0	0	1	0	0	0	1141	535	19	1	2359	1	ATP2A2	12	110780236	Missense_Mutation	SNP	C	TCGA-EW-A1J1-01A-11D-A188-09	10328202	110780236	23071659	14	72543										
RYR3	0	genome.wustl.edu	37	chr15	33954810	33954810	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cccttggagagtctcaggacGaaggctctgagtatgctgac	13	10	2	3			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	15	33954810	33954810	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.5079	p.T1693	0.223	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	78	0	0	52	43	45.26	-	-	-	A	33954810	G	A	33954810	2	1	892	1	0	0	0	0	0	0	0	1	13856	1045	37	1		1	RYR3	15	33954810	Silent	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		33954810	68576582	15	72544										
CLEC16A	0	genome.wustl.edu	37	chr16	11071088	11071088	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atttctcctggcaggcatcgGaatcggggtaaactgagtga	13	8	1	2			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	16	11071088	11071088	G	T	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	1	known	silent	c.735	p.R245	0.998	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	70	0	0	64	53	45.3	-	-	-	T	11071088	G	T	11071088	2	4	892	1	0	0	0	0	0	0	0	1	3530	1161	41	2		2	CLEC16A	16	11071088	Silent	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		11071088	79283665	16	72545										
MYCBPAP	0	genome.wustl.edu	37	chr17	48594830	48594830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tccggtacacccagtctcagCcctggcttcactgtctttca	7	16	4	0			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	17	48594830	48594830	C	A	SNP	MYCBPAP	ENST00000452039	human	ensembl	69_37n	1	novel	missense	c.510	p.S170R	0.000	NULL	NULL	-	no_stop_codon	MYCBPAP	HGNC	ENSG00000136449	63	0	0	46	36	43.9	-	-	-	A	48594830	C	A	48594830	3	1	892	1	0	0	0	0	1	0	0	0	10091	754	26	4		4	MYCBPAP	17	48594830	Missense_Mutation	SNP	C	TCGA-EW-A1J1-01A-11D-A188-09		48594830	32600380	17	72546										
ELFN2	0	genome.wustl.edu	37	chr22	37770887	37770887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttgaggctgtggtagggccGgggcaccagcagcgggtagc	20	9	0	1			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	22	37770887	37770887	G	A	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.688	p.R230W	0.296	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	27	0	0	22	8	26.67	-	-	-	A	37770887	G	A	37770887	3	1	892	1	0	0	0	0	1	0	0	0	5095	1115	39	1	1778	1	ELFN2	22	37770887	Missense_Mutation	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		37770887	13533679	18	72547										
POLA1	0	genome.wustl.edu	37	chrX	24722586	24722586	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccttgatgctgatgagaaaGgtacctaccttttgttttcc	8	10	0	3			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	X	24722586	24722586	G	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	1	known	nonsense	c.346	p.G116*	1.000	tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	229	0	0	248	67	21.27	-	-	-	T	24722586	G	T	24722586	4	4	892	1	0	0	0	0	0	1	0	0	12261	1014	35	4	342	4	POLA1	23	24722586	Nonsense_Mutation	SNP	G	TCGA-EW-A1J1-01A-11D-A188-09		24722586	130547974	19	72548										
ATP8B2	0	genome.wustl.edu	37	chr1	154303923	154303923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	agttttcttcttttcagttcCgccacaagagcgataaccag	7	11	3	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	1	154303923	154303923	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.406	p.R136C	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	56	0	0	133	20	13.07	-	-	-	T	154303923	C	T	154303923	3	4	893	1	0	0	0	0	1	0	0	0	1199	652	23	1	428	1	ATP8B2	1	154303923	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		154303923	94946698	1	72549										
TMEM63A	0	genome.wustl.edu	37	chr1	226034840	226034840	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ttgtggatggcaccataggtCtgctgctgctgctgctgcgg	15	10	1	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	1	226034840	226034840	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	silent	c.2325	p.Q775	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187	23	0	0	18	7	28	-	-	-	T	226034840	C	T	226034840	2	4	893	1	0	0	0	0	0	0	0	1	16285	912	32	2		2	TMEM63A	1	226034840	Silent	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09	71730917	226034840	23215781	2	72550										
LCT	0	genome.wustl.edu	37	chr2	136548358	136548358	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	tcattgtattcctcctttaaCcagttcaggatcctcctgaa	5	12	2	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	2	136548358	136548358	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	nonsense	c.5205	p.W1735*	0.998	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	122	0	0	99	22	18.18	-	-	-	T	136548358	C	T	136548358	4	4	893	1	0	0	0	0	0	1	0	0	8747	508	18	4	590	4	LCT	2	136548358	Nonsense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		136548358	106651015	3	72551										
OR5K2	0	genome.wustl.edu	37	chr3	98217148	98217148	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ttctcaggttcagttcaagtCtttaccataggtagtgtctt	8	8	5	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	3	98217148	98217148	C	T	SNP	OR5K2	ENST00000427338	human	ensembl	69_37n	1	known	silent	c.624	p.V208	0.477	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861	127	1	0.78	177	47	20.89	-	-	-	T	98217148	C	T	98217148	2	4	893	1	0	0	0	0	0	0	0	1	11240	900	32	2		2	OR5K2	3	98217148	Silent	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		98217148	99805282	4	72552										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	84	0	0	55	25	31.25	-	-	-	G	178952085	A	G	178952085	3	3	893	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-EW-A1J2-01A-21D-A13L-09	80734937	178952085	19070345	5	72553										
KCNMB3	0	genome.wustl.edu	37	chr3	178984451	178984451	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	acttacctcccctggcgcctCcggctgccctgaagtgtgat	10	16	0	2			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	3	178984451	178984451	C	T	SNP	KCNMB3	ENST00000349697	human	ensembl	69_37n	-1	known	silent	c.48	p.R16	0.988	NULL	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121	57	0	0	53	31	36.9	-	-	-	T	178984451	C	T	178984451	2	4	893	1	0	0	0	0	0	0	0	1	8130	842	30	2		2	KCNMB3	3	178984451	Silent	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09	32366	178984451	19037979	6	72554										
MUC4	0	genome.wustl.edu	37	chr3	195511668	195511668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	cctgtggacactgaggaagcGtcggtgacaggaagaggggt	18	7	0	3			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	3	195511668	195511668	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.6783	p.D2261	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	10	0	0	724	157	17.78	-	-	-	A	195511668	G	A	195511668	2	1	893	1	0	0	0	0	0	0	0	1	10050	1136	40	1		1	MUC4	3	195511668	Silent	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09	16527217	195511668	2510762	7	72555										
CLDN12	0	genome.wustl.edu	37	chr7	90042451	90042451	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	cctctccccatctatctgggTcatcttttataacatccatc	3	15	5	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	7	90042451	90042451	T	A	SNP	CLDN12	ENST00000287916	human	ensembl	69_37n	1	known	missense	c.461	p.V154D	1.000	prints_Claudin12	prints_Claudin12	-	no_errors	CLDN12	HGNC	ENSG00000157224	107	0	0	141	34	18.99	-	-	-	A	90042451	T	A	90042451	3	1	893	1	0	0	0	0	1	0	0	0	3504	1667	58	5	463	5	CLDN12	7	90042451	Missense_Mutation	SNP	T	TCGA-EW-A1J2-01A-21D-A13L-09		90042451	69096212	8	72556										
PEG10	0	genome.wustl.edu	37	chr7	94293359	94293359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ctttgaagaccctcagaggcGagaggttgccaaacgcaaga	12	10	1	5			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	7	94293359	94293359	G	A	SNP	PEG10	ENST00000482108	human	ensembl	69_37n	1	known	missense	c.491	p.R164Q	0.162	pfam_Retrotrans_gag	pfam_Retrotrans_gag,superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PEG10	HGNC	ENSG00000242265	28	0	0	29	13	30.95	-	-	-	A	94293359	G	A	94293359	3	1	893	1	0	0	0	0	1	0	0	0	11792	1058	37	1	725	1	PEG10	7	94293359	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09	4250908	94293359	64845304	9	72557										
CRISPLD1	0	genome.wustl.edu	37	chr8	75927084	75927084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	atgccccttacaaacatgggCggccctgttctgcttgccca	9	15	1	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	8	75927084	75927084	C	T	SNP	CRISPLD1	ENST00000262207	human	ensembl	69_37n	1	known	missense	c.664	p.R222W	0.873	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	32	0	0	46	7	13.21	-	-	-	T	75927084	C	T	75927084	3	4	893	1	0	0	0	0	1	0	0	0	3912	759	27	1	682	1	CRISPLD1	8	75927084	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		75927084	70436938	10	72558										
TESK1	0	genome.wustl.edu	37	chr9	35608979	35608979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	accccccaactggggggacaAtctgactcgagtcaacccct	9	16	2	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	9	35608979	35608979	A	G	SNP	TESK1	ENST00000336395	human	ensembl	69_37n	1	known	missense	c.1121	p.N374S	0.737	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140	49	0	0	30	12	28.57	-	-	-	G	35608979	A	G	35608979	3	3	893	1	0	0	0	0	1	0	0	0	15862	101	4	5	1159	5	TESK1	9	35608979	Missense_Mutation	SNP	A	TCGA-EW-A1J2-01A-21D-A13L-09		35608979	105604452	11	72559										
ZMIZ1	0	genome.wustl.edu	37	chr10	81063837	81063837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ccctcaacggggaggatgggGtggagcagacggccatcaag	17	10	2	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	10	81063837	81063837	G	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	69_37n	1	known	missense	c.2191	p.V731L	1.000	pfscan_Znf_MIZ	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175	44	0	0	48	8	14.29	-	-	-	T	81063837	G	T	81063837	3	4	893	1	0	0	0	0	1	0	0	0	17792	1261	44	4	2249	4	ZMIZ1	10	81063837	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09		81063837	54470910	12	72560										
C10orf120	0	genome.wustl.edu	37	chr10	124459255	124459255	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ttcttgcaccattgtgtcacTagccctctgtttttcaatcc	5	13	4	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	10	124459255	124459255	T	C	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	missense	c.52	p.S18G	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	149	0	0	231	26	10.12	-	-	-	C	124459255	T	C	124459255	3	2	893	1	0	0	0	0	1	0	0	0	1600	1522	53	5	967	5	C10orf120	10	124459255	Missense_Mutation	SNP	T	TCGA-EW-A1J2-01A-21D-A13L-09	43395418	124459255	11075492	13	72561										
OR4D10	0	genome.wustl.edu	37	chr11	59245266	59245266	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	tttcggtgatggcattggatCgatatgtggccatctccaag	12	8	1	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	11	59245266	59245266	C	T	SNP	OR4D10	ENST00000530162	human	ensembl	69_37n	1	known	nonsense	c.364	p.R122*	0.463	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	78	0	0	80	45	36	-	-	-	T	59245266	C	T	59245266	4	4	893	1	0	0	0	0	0	1	0	0	11127	876	31	1	366	1	OR4D10	11	59245266	Nonsense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		59245266	75761250	14	72562										
ABCG4	0	genome.wustl.edu	37	chr11	119027364	119027364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	gactcggcttgcattgccccAcctaccacaacccggctgac	8	18	0	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	11	119027364	119027364	A	C	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	missense	c.901	p.T301P	1.000	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	45	0	0	59	11	15.49	-	-	-	C	119027364	A	C	119027364	3	2	893	1	0	0	0	0	1	0	0	0	70	159	6	5	927	5	ABCG4	11	119027364	Missense_Mutation	SNP	A	TCGA-EW-A1J2-01A-21D-A13L-09	59782098	119027364	15979152	15	72563										
VASH1	0	genome.wustl.edu	37	chr14	77237561	77237561	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	acacagggacacagttctttGaaattaagaagagcagacct	9	8	1	4			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	14	77237561	77237561	G	C	SNP	VASH1	ENST00000167106	human	ensembl	69_37n	1	known	missense	c.427	p.E143Q	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246	28	0	0	81	10	10.99	-	-	-	C	77237561	G	C	77237561	3	2	893	1	0	0	0	0	1	0	0	0	17222	1291	45	2	437	2	VASH1	14	77237561	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09		77237561	30111979	16	72564										
TLE3	0	genome.wustl.edu	37	chr15	70345629	70345629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	aggtcccaggagcgcaccgtGttgtccaggccccctgtcca	12	16	0	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	15	70345629	70345629	G	T	SNP	TLE3	ENST00000558939	human	ensembl	69_37n	-1	known	missense	c.1920	p.N640K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	130	0	0	145	24	14.2	-	-	-	T	70345629	G	T	70345629	3	4	893	1	0	0	0	0	1	0	0	0	16035	1368	48	4	414	4	TLE3	15	70345629	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09		70345629	32185763	17	72565										
POLG	0	genome.wustl.edu	37	chr15	89866675	89866676	+	Frame_Shift_Ins	INS	-	-	T													0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ccagcagccagggatgtccaINScgtcgttgtaaggtccattg							TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	15	89866675	89866676	-	T	INS	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2225_2224	p.V742fs	1.000:1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	45	0	0	117	14	10.69	-	-	-	T	89866676	-	T	89866675	7	5	893	1	0	1	1	0	0	0	0	0	12274	159	6	0	1538	0	POLG	15	89866675	Frame_Shift_Ins	INS	-	TCGA-EW-A1J2-01A-21D-A13L-09	19521046	89866675	12664717	18	72566										
CBFB	0	genome.wustl.edu	37	chr16	67100607	67100607	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	atatttgaaggctcccatgaTtctgaatggagtctgtgtta	10	6	2	3			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	16	67100607	67100607	T	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.305	p.I102N	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	214	0	0	169	86	33.73	-	-	-	A	67100607	T	A	67100607	3	1	893	1	0	0	0	0	1	0	0	0	2724	1493	52	5	319	5	CBFB	16	67100607	Missense_Mutation	SNP	T	TCGA-EW-A1J2-01A-21D-A13L-09		67100607	23254146	19	72567										
CDH1	0	genome.wustl.edu	37	chr16	68857367	68857367	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	gtgactacaaaatcaatctcAagctcatggataaccagaat	6	9	3	2			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	16	68857367	68857367	A	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.2002	p.K668*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	69	0	0	49	22	30.99	-	-	-	T	68857367	A	T	68857367	4	4	893	1	0	0	0	0	0	1	0	0	3124	131	5	5	2052	5	CDH1	16	68857367	Nonsense_Mutation	SNP	A	TCGA-EW-A1J2-01A-21D-A13L-09	1756760	68857367	21497386	20	72568										
KIF2B	0	genome.wustl.edu	37	chr17	51901204	51901204	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ttctgcttcgaccatgccttCgatgacaaagcctccaacga	7	14	1	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	17	51901204	51901204	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	silent	c.810	p.F270	0.978	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	93	0	0	97	29	23.02	-	-	-	T	51901204	C	T	51901204	2	4	893	1	0	0	0	0	0	0	0	1	8350	883	31	1		1	KIF2B	17	51901204	Silent	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		51901204	29294006	21	72569										
KIF19	0	genome.wustl.edu	37	chr17	72341085	72341085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	gacctggctggctcagagcgCgcctcgcaggtgaggctggg	18	12	1	2			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	17	72341085	72341085	C	T	SNP	KIF19	ENST00000389916	human	ensembl	69_37n	1	known	silent	c.768	p.R256	0.038	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	13	0	0	16	9	36	-	-	-	T	72341085	C	T	72341085	2	4	893	1	0	0	0	0	0	0	0	1	8334	755	27	1		1	KIF19	17	72341085	Silent	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09	20439881	72341085	8854125	22	72570										
PIGN	0	genome.wustl.edu	37	chr18	59749915	59749915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	attcatcttacctttttgacGataactgagtagtcaactga	6	8	3	3			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	18	59749915	59749915	G	A	SNP	PIGN	ENST00000357637	human	ensembl	69_37n	-1	known	missense	c.2567	p.S856L	1.000	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563	47	0	0	85	30	26.09	-	-	-	A	59749915	G	A	59749915	3	1	893	1	0	0	0	0	1	0	0	0	11967	1059	37	1	244	1	PIGN	18	59749915	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09		59749915	18327333	23	72571										
RANBP3	0	genome.wustl.edu	37	chr19	5921287	5921287	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	cagcccccggcctctctccaCccaggactgtgaggtcttgt	10	17	2	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	19	5921287	5921287	C	A	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	missense	c.1255	p.V419L	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	35	0	0	39	6	13.33	-	-	-	A	5921287	C	A	5921287	3	1	893	1	0	0	0	0	1	0	0	0	13112	507	18	4	464	4	RANBP3	19	5921287	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		5921287	53207696	24	72572										
IRGC	0	genome.wustl.edu	37	chr19	44223936	44223936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ggccctggaggatgacgagcCgcagccggaggtcagcttgg	18	11	1	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	19	44223936	44223936	C	T	SNP	IRGC	ENST00000244314	human	ensembl	69_37n	1	known	missense	c.1226	p.P409L	0.059	NULL	pfam_Interferon-induced_GTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	13	0	0	27	6	17.65	-	-	-	T	44223936	C	T	44223936	3	4	893	1	0	0	0	0	1	0	0	0	7892	652	23	1	1228	1	IRGC	19	44223936	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09	38302649	44223936	14905047	25	72573										
EIF2S2	0	genome.wustl.edu	37	chr20	32678367	32678367	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	ctatctgtttctgttggaatCttcctttgattacaagttgg	8	7	3	1			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	20	32678367	32678367	C	T	SNP	EIF2S2	ENST00000374980	human	ensembl	69_37n	-1	known	missense	c.782	p.R261K	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977	160	0	0	258	53	17.04	-	-	-	T	32678367	C	T	32678367	3	4	893	1	0	0	0	0	1	0	0	0	5045	913	32	2	227	2	EIF2S2	20	32678367	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		32678367	30347153	26	72574										
TP53TG5	0	genome.wustl.edu	37	chr20	44003687	44003687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	tgtcacacccaccttgtatgGatgccacataggcatttcaa	7	12	2	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	20	44003687	44003687	G	C	SNP	TP53TG5	ENST00000372726	human	ensembl	69_37n	-1	known	missense	c.760	p.P254A	0.000	NULL	NULL	-	no_errors	TP53TG5	HGNC	ENSG00000124251	45	0	0	41	10	19.61	-	-	-	C	44003687	G	C	44003687	3	2	893	1	0	0	0	0	1	0	0	0	16487	1174	41	2	120	2	TP53TG5	20	44003687	Missense_Mutation	SNP	G	TCGA-EW-A1J2-01A-21D-A13L-09	11325320	44003687	19021833	27	72575										
BRS3	0	genome.wustl.edu	37	chrX	135570652	135570652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	4	0.563863862959083	1.5578093306288	3.31034482758621	1.32413793103448	0.485714285714286	1	0	gtaaggtgctctctttcatcCggctcacttctgttggtgtg	11	10	4	0			TCGA-EW-A1J2-01A-21D-A13L-09	TCGA-EW-A1J2-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c906931e-dc1a-434c-96cd-58088762f1e7	97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae	X	135570652	135570652	C	T	SNP	BRS3	ENST00000370648	human	ensembl	69_37n	1	known	missense	c.379	p.R127W	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239	97	0	0	106	31	22.63	-	-	-	T	135570652	C	T	135570652	3	4	893	1	0	0	0	0	1	0	0	0	1530	643	23	1	381	1	BRS3	23	135570652	Missense_Mutation	SNP	C	TCGA-EW-A1J2-01A-21D-A13L-09		135570652	19699908	28	72576										
NES	0	genome.wustl.edu	37	chr1	156639358	156639358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gctgtgacttcccctccaagTtgggaccctggccattaaca	9	14	0	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	1	156639358	156639358	T	C	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.4622	p.N1541S	0.263	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	35	0	0	50	13	20.63	-	-	-	C	156639358	T	C	156639358	3	2	894	1	0	0	0	0	1	0	0	0	10409	1725	60	5	247	5	NES	1	156639358	Missense_Mutation	SNP	T	TCGA-EW-A1J3-01A-11D-A13L-09		156639358	92611263	1	72577										
OTOF	0	genome.wustl.edu	37	chr2	26697524	26697524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gggtttggcgaaggtccggcCcatgaagtcagctttgccct	14	11	1	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	26697524	26697524	C	T	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.3145	p.G1049S	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	40	0	0	39	18	31.58	-	-	-	T	26697524	C	T	26697524	3	4	894	1	0	0	0	0	1	0	0	0	11376	623	22	4	3117	4	OTOF	2	26697524	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09		26697524	216501849	2	72578										
MARCO	0	genome.wustl.edu	37	chr2	119750834	119750834	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	ccattgtcttctgccgcatgCtgggttactccaaaggaagg	11	11	2	0			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	119750834	119750834	C	A	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	1	known	missense	c.1387	p.L463M	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Collagen,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MARCO	HGNC	ENSG00000019169	68	0	0	74	50	40.32	-	-	-	A	119750834	C	A	119750834	3	1	894	1	0	0	0	0	1	0	0	0	9382	796	28	4	1449	4	MARCO	2	119750834	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	93053310	119750834	123448539	3	72579										
TANK	0	genome.wustl.edu	37	chr2	162087536	162087536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	taaaacagataaacaagaagCgctgtttaagcctcaggcta	8	8	1	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	162087536	162087536	C	T	SNP	TANK	ENST00000259075	human	ensembl	69_37n	1	known	missense	c.575	p.A192V	0.131	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560	24	0	0	31	17	35.42	-	-	-	T	162087536	C	T	162087536	3	4	894	1	0	0	0	0	1	0	0	0	15638	768	27	1	630	1	TANK	2	162087536	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	42336702	162087536	81111837	4	72580										
SPHKAP	0	genome.wustl.edu	37	chr2	228884249	228884249	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gagctcattccatgaccgagAaaccactgtatcttttgtgg	9	10	2	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	2	228884249	228884249	A	C	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.1321	p.S441A	0.080	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	56	0	0	51	18	26.09	-	-	-	C	228884249	A	C	228884249	3	2	894	1	0	0	0	0	1	0	0	0	15139	246	9	5	3805	5	SPHKAP	2	228884249	Missense_Mutation	SNP	A	TCGA-EW-A1J3-01A-11D-A13L-09	66796713	228884249	14315124	5	72581										
RAP1GDS1	0	genome.wustl.edu	37	chr4	99355161	99355161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gcaactagtgaacatgtaatAatgcagaatgaagctcttgt	9	6	1	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	4	99355161	99355161	A	G	SNP	RAP1GDS1	ENST00000339360	human	ensembl	69_37n	1	known	missense	c.1518	p.I506M	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698	60	0	0	105	28	21.05	-	-	-	G	99355161	A	G	99355161	3	3	894	1	0	0	0	0	1	0	0	0	13122	352	13	5	1568	5	RAP1GDS1	4	99355161	Missense_Mutation	SNP	A	TCGA-EW-A1J3-01A-11D-A13L-09		99355161	91799115	6	72582										
ABCE1	0	genome.wustl.edu	37	chr4	146038513	146038513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	cgacttcatctgctgtttatAtggtgtaccaagcgcctatg	9	10	2	0			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	4	146038513	146038513	A	G	SNP	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	missense	c.869	p.Y290C	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	130	0	0	140	78	35.78	-	-	-	G	146038513	A	G	146038513	3	3	894	1	0	0	0	0	1	0	0	0	64	449	16	5	903	5	ABCE1	4	146038513	Missense_Mutation	SNP	A	TCGA-EW-A1J3-01A-11D-A13L-09	46683352	146038513	45115763	7	72583										
SLC6A19	0	genome.wustl.edu	37	chr5	1216682	1216682	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	ctcgtctgcagcaacaactgCgagaaggactcggtgattgt	12	10	1	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	1216682	1216682	C	T	SNP	SLC6A19	ENST00000515652	human	ensembl	69_37n	1	known	nonsense	c.805	p.R269*	0.955	NULL	pfam_Na/ntran_symport,prints_Na/ntran_symport,pfscan_Na/ntran_symport	-	no_errors	SLC6A19	HGNC	ENSG00000174358	72	0	0	99	40	28.57	-	-	-	T	1216682	C	T	1216682	4	4	894	1	0	0	0	0	0	1	0	0	14771	776	27	1	923	1	SLC6A19	5	1216682	Nonsense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09		1216682	179698578	8	72584										
ZFR	0	genome.wustl.edu	37	chr5	32364331	32364331	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	ctcagtgcatccccagggctCtgagggctagaagcactgct	12	13	2	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	32364331	32364331	C	T	SNP	ZFR	ENST00000265069	human	ensembl	69_37n	-1	known	silent	c.2886	p.Q962	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	32	0	0	38	58	60.42	-	-	-	T	32364331	C	T	32364331	2	4	894	1	0	0	0	0	0	0	0	1	17755	912	32	2		2	ZFR	5	32364331	Silent	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	31147649	32364331	148550929	9	72585										
FLT4	0	genome.wustl.edu	37	chr5	180056385	180056385	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gctggagagttctgtgtgggTctgctgggagcgtcgctcgg	19	8	2	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	5	180056385	180056385	T	C	SNP	FLT4	ENST00000261937	human	ensembl	69_37n	-1	known	missense	c.859	p.T287A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR3_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT4	HGNC	ENSG00000037280	60	0	0	96	27	21.43	-	-	-	C	180056385	T	C	180056385	3	2	894	1	0	0	0	0	1	0	0	0	5990	1667	58	5	3336	5	FLT4	5	180056385	Missense_Mutation	SNP	T	TCGA-EW-A1J3-01A-11D-A13L-09	147692054	180056385	858875	10	72586										
NQO2	0	genome.wustl.edu	37	chr6	3019762	3019762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	agtccttgcccctcagatcaGctttgctcctgaaattgcat	7	13	2	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	6	3019762	3019762	G	C	SNP	NQO2	ENST00000338130	human	ensembl	69_37n	1	known	missense	c.569	p.S190T	0.918	pfam_Flavodoxin_fold	pfam_Flavodoxin_fold,pfam_FMN_red	-	no_errors	NQO2	HGNC	ENSG00000124588	116	0	0	105	47	30.92	-	-	-	C	3019762	G	C	3019762	3	2	894	1	0	0	0	0	1	0	0	0	10685	971	34	4	591	4	NQO2	6	3019762	Missense_Mutation	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09		3019762	168095305	11	72587										
PRDM1	0	genome.wustl.edu	37	chr6	106536124	106536124	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	tgaggtttcagggattggcaGaggggaccaaggggaccatg	18	6	1	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	6	106536124	106536124	G	A	SNP	PRDM1	ENST00000369096	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	0.998	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657	78	0	0	67	42	38.53	-	-	-	A	106536124	G	A	106536124	3	1	894	1	0	0	0	0	1	0	0	0	12531	943	33	2	97	2	PRDM1	6	106536124	Missense_Mutation	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09	103516362	106536124	64578943	12	72588										
VPS13B	0	genome.wustl.edu	37	chr8	100789055	100789055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gtgatccacttgtgactccaAcagccctggctgcctgtacc	9	15	0	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	8	100789055	100789055	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.7375	p.T2459A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	109	0	0	110	48	30.38	-	-	-	G	100789055	A	G	100789055	3	3	894	1	0	0	0	0	1	0	0	0	17287	43	2	5	7727	5	VPS13B	8	100789055	Missense_Mutation	SNP	A	TCGA-EW-A1J3-01A-11D-A13L-09		100789055	45574967	13	72589										
CCDC6	0	genome.wustl.edu	37	chr10	61552827	61552827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	agatggaggcggcgtgggccGtttgaatttgtcaggactgt	17	6	1	2			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	10	61552827	61552827	G	A	SNP	CCDC6	ENST00000263102	human	ensembl	69_37n	-1	known	missense	c.1273	p.R425W	1.000	NULL	pfam_DUF2046	-	no_errors	CCDC6	HGNC	ENSG00000108091	198	0	0	186	104	35.74	-	-	-	A	61552827	G	A	61552827	3	1	894	1	0	0	0	0	1	0	0	0	2857	1144	40	1	155	1	CCDC6	10	61552827	Missense_Mutation	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09		61552827	73981920	14	72590										
WDR66	0	genome.wustl.edu	37	chr12	122359385	122359385	+	Frame_Shift_Del	DEL	C	C	-													0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gaggaggagaggaaaacgggCgaggaggaaggggaggagga							TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	12	122359385	122359385	C	-	DEL	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	frame_shift_del	c.174	p.E59fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	27	0	0	46	8	14.04	-	-	-	-	122359385	C	-	122359385	7	5	894	1	0	1	0	1	0	0	0	0	17414	755	27	0	176	0	WDR66	12	122359385	Frame_Shift_Del	DEL	C	TCGA-EW-A1J3-01A-11D-A13L-09		122359385	11492510	15	72591										
BIVM	0	genome.wustl.edu	37	chr13	103490993	103490993	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	tcctttcttcttaactatagAtgggcagatattgttactga	7	7	2	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	13	103490993	103490993	A	G	SNP	BIVM	ENST00000257336	human	ensembl	69_37n	1	known	silent	c.1122	p.K374	0.998	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897	63	0	0	59	39	39.8	-	-	-	G	103490993	A	G	103490993	2	3	894	1	0	0	0	0	0	0	0	1	1446	347	12	5		5	BIVM	13	103490993	Silent	SNP	A	TCGA-EW-A1J3-01A-11D-A13L-09		103490993	11678885	16	72592										
EFCAB5	0	genome.wustl.edu	37	chr17	28378166	28378166	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	tggatcggcagaggacattgGccctgctggaattgttctat	13	8	1	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	28378166	28378166	G	C	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	1	known	missense	c.1231	p.A411P	0.989	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	62	0	0	66	104	60.82	-	-	-	C	28378166	G	C	28378166	3	2	894	1	0	0	0	0	1	0	0	0	4973	1203	42	4	1265	4	EFCAB5	17	28378166	Missense_Mutation	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09		28378166	52817044	17	72593										
ZPBP2	0	genome.wustl.edu	37	chr17	38031506	38031506	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	tctggtatttttcaaccttaGgcaagagatcgaatagaaga	9	6	2	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38031506	38031506	G	A	SNP	ZPBP2	ENST00000348931	human	ensembl	69_37n	1	known	splice_site	c.709-1	e7-1	1.000	-	-	-	no_errors	ZPBP2	HGNC	ENSG00000186075	52	0	0	788	157	16.61	-	-	-	A	38031506	G	A	38031506	5	1	894	1	0	0	0	0	0	0	1	0	18313	1014	35	4	734	4	ZPBP2	17	38031506	Splice_Site	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09	9653340	38031506	43163704	18	72594										
MED24	0	genome.wustl.edu	37	chr17	38189359	38189359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	caccagggactgcgtctcgcCtgtcaggttcatggtgccct	12	14	3	0			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189359	38189359	C	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	missense	c.772	p.G258S	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	30	0	0	289	51	15	-	-	-	T	38189359	C	T	38189359	3	4	894	1	0	0	0	0	1	0	0	0	9513	681	24	4	2273	4	MED24	17	38189359	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	157853	38189359	43005851	19	72595			1	118		3	3	332	C		3.56126e-08
MED24	0	genome.wustl.edu	37	chr17	38189431	38189431	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gccggtcttgtgcatctgctCcgcatgcacagacagcatcg	11	14	2	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189431	38189431	C	G	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	missense	c.700	p.E234Q	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	27	0	0	364	54	12.92	-	-	-	G	38189431	C	G	38189431	3	3	894	1	0	0	0	0	1	0	0	0	9513	864	30	2	2345	2	MED24	17	38189431	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	72	38189431	43005779	20	72596			1	118		3	3	332	C		3.56126e-08
MED24	0	genome.wustl.edu	37	chr17	38189690	38189690	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	ccaagtttcaagagagaatgCtcgatggcagtccaagaagc	11	9	1	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	17	38189690	38189690	C	G	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	missense	c.579	p.E193D	0.980	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	23	0	0	291	49	14.41	-	-	-	G	38189690	C	G	38189690	3	3	894	1	0	0	0	0	1	0	0	0	9513	796	28	4	2470	4	MED24	17	38189690	Missense_Mutation	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09	259	38189690	43005520	21	72597			1	118		3	3	332	C		3.56126e-08
VAV1	0	genome.wustl.edu	37	chr19	6850694	6850694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gttccagatataacgtcgagGtcaagcacattaaaatcatg	8	8	2	1			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	6850694	6850694	G	A	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	missense	c.2143	p.V715I	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	54	0	0	33	26	44.07	-	-	-	A	6850694	G	A	6850694	3	1	894	1	0	0	0	0	1	0	0	0	17228	1261	44	4	2237	4	VAV1	19	6850694	Missense_Mutation	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09		6850694	52278289	22	72598										
MUC16	0	genome.wustl.edu	37	chr19	9038120	9038120	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gtggaaatccctggggagaaTgtagaagtcactggagctga	15	6	1	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	19	9038120	9038120	T	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.36156	p.T12052	0.021	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	54	0	0	70	40	36.36	-	-	-	A	9038120	T	A	9038120	2	1	894	1	0	0	0	0	0	0	0	1	10045	1451	51	5		5	MUC16	19	9038120	Silent	SNP	T	TCGA-EW-A1J3-01A-11D-A13L-09	2187426	9038120	50090863	23	72599										
MAVS	0	genome.wustl.edu	37	chr20	3835301	3835301	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	gctgaagacaagacctataaGtatatctgccgcaatttcag	8	9	2	3			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	20	3835301	3835301	G	A	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	1	known	silent	c.30	p.K10	0.286	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	104	1	0.95	116	46	28.22	-	-	-	A	3835301	G	A	3835301	2	1	894	1	0	0	0	0	0	0	0	1	9409	1020	36	4		4	MAVS	20	3835301	Silent	SNP	G	TCGA-EW-A1J3-01A-11D-A13L-09		3835301	59190219	24	72600										
PIWIL3	0	genome.wustl.edu	37	chr22	25158416	25158416	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	3	0.760522888061805	1.31688311688312	0	1.79574970484061	0.1	0.5224358974359	0	ggtgcctcttgttggtagctCtccctgcggcgggctctgcc	14	14	3	0			TCGA-EW-A1J3-01A-11D-A13L-09	TCGA-EW-A1J3-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ac13b81a-ca05-432c-918a-0c9c8170bf46	3e0f2e32-d64a-416a-be72-eb34ff190ed6	22	25158416	25158416	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	silent	c.51	p.E17	0.000	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	27	0	0	31	17	35.42	-	-	-	T	25158416	C	T	25158416	2	4	894	1	0	0	0	0	0	0	0	1	12033	912	32	2		2	PIWIL3	22	25158416	Silent	SNP	C	TCGA-EW-A1J3-01A-11D-A13L-09		25158416	26146150	25	72601										
CCNL2	0	genome.wustl.edu	37	chr1	1328173	1328173	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagtcttagtcacttaccctCagaggctaccctttgattga	7	11	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	1328173	1328173	C	T	SNP	CCNL2	ENST00000481223	human	ensembl	69_37n	-1	known	missense	c.670	p.E224K	1.000	pirsf_Cyclin_L	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978	64	0	0	16	32	66.67	-	-	-	T	1328173	C	T	1328173	3	4	895	1	0	0	0	0	1	0	0	0	2961	835	29	2	942	2	CCNL2	1	1328173	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		1328173	247922448	1	72602										
NPHP4	0	genome.wustl.edu	37	chr1	5925232	5925232	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtgtcccccgaaggacaaggGacaggcgggtcagctggcct	16	12	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	5925232	5925232	G	C	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.3746	p.S1249C	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	25	0	0	4	13	76.47	-	-	-	C	5925232	G	C	5925232	3	2	895	1	0	0	0	0	1	0	0	0	10653	1174	41	2	550	2	NPHP4	1	5925232	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4597059	5925232	243325389	2	72603										
PLOD1	0	genome.wustl.edu	37	chr1	12030796	12030796	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acatgaaccagatcggctttGagcgggagtggcacaaattc	12	9	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	12030796	12030796	G	C	SNP	PLOD1	ENST00000376369	human	ensembl	69_37n	1	known	missense	c.1966	p.E656Q	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444	52	0	0	27	37	57.81	-	-	-	C	12030796	G	C	12030796	3	2	895	1	0	0	0	0	1	0	0	0	12175	1291	45	2	1891	2	PLOD1	1	12030796	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6105564	12030796	237219825	3	72604										
HP1BP3	0	genome.wustl.edu	37	chr1	21072124	21072124	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atctctagaatcatctggctCtttcttcggaaacagaactc	6	11	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	21072124	21072124	C	G	SNP	HP1BP3	ENST00000312239	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427Q	1.000	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5	-	no_errors	HP1BP3	HGNC	ENSG00000127483	113	0	0	37	51	57.95	-	-	-	G	21072124	C	G	21072124	3	3	895	1	0	0	0	0	1	0	0	0	7379	922	32	2	390	2	HP1BP3	1	21072124	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9041328	21072124	228178497	4	72605										
EPB41	0	genome.wustl.edu	37	chr1	29314172	29314172	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agaacaaggagcggacatcaGaaagcagaggactttcacga	12	8	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	29314172	29314172	G	C	SNP	EPB41	ENST00000343067	human	ensembl	69_37n	1	known	missense	c.223	p.E75Q	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	70	0	0	23	22	48.89	-	-	-	C	29314172	G	C	29314172	3	2	895	1	0	0	0	0	1	0	0	0	5188	943	33	2	225	2	EPB41	1	29314172	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8242048	29314172	219936449	5	72606										
PDE4B	0	genome.wustl.edu	37	chr1	66834514	66834514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcagacctgagcaaccccacCaagtccttggaattgtatcg	9	13	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	66834514	66834514	C	T	SNP	PDE4B	ENST00000329654	human	ensembl	69_37n	1	known	silent	c.1707	p.T569	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588	66	0	0	23	23	50	-	-	-	T	66834514	C	T	66834514	2	4	895	1	0	0	0	0	0	0	0	1	11713	581	21	4		4	PDE4B	1	66834514	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	37520342	66834514	182416107	6	72607										
SGIP1	0	genome.wustl.edu	37	chr1	67155912	67155912	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccattcattcttccagccctCctccaatagcacccttagcg	4	18	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	67155912	67155912	C	A	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.1576	p.P526T	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	135	0	0	43	60	58.25	-	-	-	A	67155912	C	A	67155912	3	1	895	1	0	0	0	0	1	0	0	0	14294	855	30	2	1549	2	SGIP1	1	67155912	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	321398	67155912	182094709	7	72608										
CELSR2	0	genome.wustl.edu	37	chr1	109813147	109813147	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctgtaccgggcactcactGaggtgcgcgatgtcaacacc	11	14	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	109813147	109813147	G	T	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	nonsense	c.7408	p.E2470*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	68	0	0	29	46	61.33	-	-	-	T	109813147	G	T	109813147	4	4	895	1	0	0	0	0	0	1	0	0	3251	1291	45	2	7502	2	CELSR2	1	109813147	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	42657235	109813147	139437474	8	72609			1	119		3	3	756	G		4.443333e-05
CELSR2	0	genome.wustl.edu	37	chr1	109813628	109813628	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atctatgacacgctcatctgGagttttgctggcccggtggc	12	11	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	109813628	109813628	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.7563	p.W2521C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	56	0	0	22	31	58.49	-	-	-	C	109813628	G	C	109813628	3	2	895	1	0	0	0	0	1	0	0	0	3251	1183	41	2	7661	2	CELSR2	1	109813628	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	481	109813628	139436993	9	72610			1	119		3	3	756	G		4.443333e-05
CELSR2	0	genome.wustl.edu	37	chr1	109813902	109813902	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgcccagcggcagggctttGagaagaaaggtcctgtgtga	15	9	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	109813902	109813902	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.7660	p.E2554Q	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	44	0	0	11	23	67.65	-	-	-	C	109813902	G	C	109813902	3	2	895	1	0	0	0	0	1	0	0	0	3251	1291	45	2	7762	2	CELSR2	1	109813902	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	274	109813902	139436719	10	72611			1	119		3	3	756	G		4.443333e-05
SPAG17	0	genome.wustl.edu	37	chr1	118558619	118558619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caggatctgtggcctgaaagGataacaatggggtcaagtct	13	7	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	118558619	118558619	G	C	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.4256	p.S1419C	0.951	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	139	0	0	131	17	11.49	-	-	-	C	118558619	G	C	118558619	3	2	895	1	0	0	0	0	1	0	0	0	15070	1174	41	2	2495	2	SPAG17	1	118558619	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8744717	118558619	130692002	11	72612										
RNF115	0	genome.wustl.edu	37	chr1	145663210	145663210	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcaagattttagaccctttCtaagtagcagtccactggac	7	10	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	145663210	145663210	C	G	SNP	RNF115	ENST00000369291	human	ensembl	69_37n	1	known	missense	c.271	p.L91V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF115	HGNC	ENSG00000121848	131	0	0	173	32	15.61	-	-	-	G	145663210	C	G	145663210	3	3	895	1	0	0	0	0	1	0	0	0	13516	912	32	2	285	2	RNF115	1	145663210	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	27104591	145663210	103587411	12	72613										
ANP32E	0	genome.wustl.edu	37	chr1	150199026	150199026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcttcatcttcatcttcatCctcatcctcatcctcctctt	1	17	8	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	150199026	150199026	C	G	SNP	ANP32E	ENST00000314136	human	ensembl	69_37n	-1	known	missense	c.595	p.D199H	0.992	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401	326	0	0	549	201	26.8	-	-	-	G	150199026	C	G	150199026	3	3	895	1	0	0	0	0	1	0	0	0	708	855	30	2	223	2	ANP32E	1	150199026	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4535816	150199026	99051595	13	72614										
ECM1	0	genome.wustl.edu	37	chr1	150482631	150482631	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccaaaaagagctgccctctCtccagcaccccaatgaacag	6	16	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	150482631	150482631	C	G	SNP	ECM1	ENST00000369049	human	ensembl	69_37n	1	known	missense	c.439	p.L147V	0.030	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369	72	0	0	86	16	15.69	-	-	-	G	150482631	C	G	150482631	3	3	895	1	0	0	0	0	1	0	0	0	4932	913	32	2	376	2	ECM1	1	150482631	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	283605	150482631	98767990	14	72615										
ANXA9	0	genome.wustl.edu	37	chr1	150967079	150967079	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagcccaattaccaagtcctGattcgcatccttatctctcg	6	14	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	150967079	150967079	G	A	SNP	ANXA9	ENST00000368947	human	ensembl	69_37n	1	known	silent	c.879	p.L293	0.987	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXXXI	-	no_errors	ANXA9	HGNC	ENSG00000143412	123	0	0	188	36	16.07	-	-	-	A	150967079	G	A	150967079	2	1	895	1	0	0	0	0	0	0	0	1	726	1277	45	2		2	ANXA9	1	150967079	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	484448	150967079	98283542	15	72616										
VPS72	0	genome.wustl.edu	37	chr1	151149393	151149393	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccttgggggaaccattcctcGaaagttgcatcatcactaaa	8	11	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	151149393	151149393	G	A	SNP	VPS72	ENST00000368892	human	ensembl	69_37n	-1	known	silent	c.822	p.F274	1.000	NULL	pfam_YL1,pfam_YL1_C	-	no_errors	VPS72	HGNC	ENSG00000163159	33	0	0	44	5	10.2	-	-	-	A	151149393	G	A	151149393	2	1	895	1	0	0	0	0	0	0	0	1	17314	1049	37	1		1	VPS72	1	151149393	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	182314	151149393	98101228	16	72617										
FLG2	0	genome.wustl.edu	37	chr1	152325364	152325364	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtgtggactgtccatgaccaGagtgggaatgtccagtggta	15	7	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	152325364	152325364	G	C	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.4898	p.S1633C	0.007	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	275	0	0	696	275	28.32	-	-	-	C	152325364	G	C	152325364	3	2	895	1	0	0	0	0	1	0	0	0	5969	942	33	2	2281	2	FLG2	1	152325364	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1175971	152325364	96925257	17	72618										
SYT11	0	genome.wustl.edu	37	chr1	155838164	155838164	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggggagagcaaaaccacctCtccatcatctccagaggagg	11	12	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	155838164	155838164	C	T	SNP	SYT11	ENST00000368324	human	ensembl	69_37n	1	known	missense	c.443	p.S148F	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718	16	0	0	24	17	41.46	-	-	-	T	155838164	C	T	155838164	3	4	895	1	0	0	0	0	1	0	0	0	15559	913	32	2	449	2	SYT11	1	155838164	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3512800	155838164	93412457	18	72619										
CCT3	0	genome.wustl.edu	37	chr1	156303431	156303431	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggccgctggatgctggacttGaatctaaaaaggtagatcac	12	8	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	156303431	156303431	G	A	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	nonsense	c.211	p.Q71*	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	84	0	0	140	27	16.17	-	-	-	A	156303431	G	A	156303431	4	1	895	1	0	0	0	0	0	1	0	0	2983	1299	45	2	1466	2	CCT3	1	156303431	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	465267	156303431	92947190	19	72620										
OR10K2	0	genome.wustl.edu	37	chr1	158390018	158390018	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgaacataggacaccaagatCaacaataaggggatagccag	10	8	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	158390018	158390018	C	T	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	silent	c.639	p.L213	0.660	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	103	0	0	189	34	15.25	-	-	-	T	158390018	C	T	158390018	2	4	895	1	0	0	0	0	0	0	0	1	10987	825	29	2		2	OR10K2	1	158390018	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2086587	158390018	90860603	20	72621										
ADAMTS4	0	genome.wustl.edu	37	chr1	161166344	161166344	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcggtgctgactggggcctCacctgacgggtaaacagaat	14	10	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	161166344	161166344	C	A	SNP	ADAMTS4	ENST00000367995	human	ensembl	69_37n	-1	known	silent	c.960	p.V320	1.000	NULL	pfam_Peptidase_M12B_N	-	no_errors	ADAMTS4	HGNC	ENSG00000158859	57	0	0	50	31	38.27	-	-	-	A	161166344	C	A	161166344	2	1	895	1	0	0	0	0	0	0	0	1	268	841	29	2		2	ADAMTS4	1	161166344	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2776326	161166344	88084277	21	72622										
F5	0	genome.wustl.edu	37	chr1	169510871	169510871	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atactcaagcatttcactgaGctctggagaagaggatctgt	10	8	4	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	169510871	169510871	G	C	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.3472	p.L1158V	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	123	0	0	102	29	22.14	-	-	-	C	169510871	G	C	169510871	3	2	895	1	0	0	0	0	1	0	0	0	5385	971	34	4	3269	4	F5	1	169510871	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8344527	169510871	79739750	22	72623										
MYOC	0	genome.wustl.edu	37	chr1	171621262	171621262	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caacctcctggccagattctCattttcttgccttagtcgct	6	14	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	171621262	171621262	C	T	SNP	MYOC	ENST00000037502	human	ensembl	69_37n	-1	known	missense	c.490	p.E164K	0.013	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	MYOC	HGNC	ENSG00000034971	76	0	0	118	61	34.08	-	-	-	T	171621262	C	T	171621262	3	4	895	1	0	0	0	0	1	0	0	0	10158	835	29	2	1036	2	MYOC	1	171621262	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2110391	171621262	77629359	23	72624										
RASAL2	0	genome.wustl.edu	37	chr1	178410736	178410736	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgtaattctgcttctgagaGagacaagtggatggaaaacc	11	7	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	178410736	178410736	G	C	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	1	known	missense	c.881	p.R294T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	89	0	0	122	29	19.21	-	-	-	C	178410736	G	C	178410736	3	2	895	1	0	0	0	0	1	0	0	0	13147	942	33	2	924	2	RASAL2	1	178410736	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6789474	178410736	70839885	24	72625										
TOR1AIP1	0	genome.wustl.edu	37	chr1	179887000	179887000	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acagtgatactgtcaaactaGaggtagaccaagaactgagc	10	8	1	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	179887000	179887000	G	C	SNP	TOR1AIP1	ENST00000435319	human	ensembl	69_37n	1	known	missense	c.1378	p.E460Q	0.824	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	60	0	0	76	21	21.65	-	-	-	C	179887000	G	C	179887000	3	2	895	1	0	0	0	0	1	0	0	0	16468	943	33	2	1416	2	TOR1AIP1	1	179887000	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1476264	179887000	69363621	25	72626										
CEP350	0	genome.wustl.edu	37	chr1	179989616	179989616	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgctgggaagctgtgtatctCatgcaacttttgatgatgat	11	6	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	179989616	179989616	C	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.2707	p.H903Y	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	62	0	0	89	14	13.59	-	-	-	T	179989616	C	T	179989616	3	4	895	1	0	0	0	0	1	0	0	0	3283	826	29	2	2749	2	CEP350	1	179989616	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	102616	179989616	69261005	26	72627										
IVNS1ABP	0	genome.wustl.edu	37	chr1	185276197	185276197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctcccagatgctacgctgCacccagttgattacctttgt	7	13	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	185276197	185276197	C	T	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	silent	c.606	p.V202	0.998	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	104	0	0	147	31	17.42	-	-	-	T	185276197	C	T	185276197	2	4	895	1	0	0	0	0	0	0	0	1	7984	697	25	4		4	IVNS1ABP	1	185276197	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5286581	185276197	63974424	27	72628										
HMCN1	0	genome.wustl.edu	37	chr1	186057115	186057115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctataaatgtagcaggacggGatgataaaaatttccacctc	8	8	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	186057115	186057115	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.9415	p.D3139N	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	129	0	0	177	25	12.38	-	-	-	A	186057115	G	A	186057115	3	1	895	1	0	0	0	0	1	0	0	0	7271	1174	41	2	9657	2	HMCN1	1	186057115	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	780918	186057115	63193506	28	72629										
TPR	0	genome.wustl.edu	37	chr1	186303607	186303607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcagctgtcactttacttgGagtagacacaacaggagttg	11	8	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	186303607	186303607	G	C	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.5032	p.P1678A	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	156	0	0	260	55	17.41	-	-	-	C	186303607	G	C	186303607	3	2	895	1	0	0	0	0	1	0	0	0	16512	1174	41	2	2123	2	TPR	1	186303607	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	246492	186303607	62947014	29	72630										
PTGS2	0	genome.wustl.edu	37	chr1	186648206	186648206	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttacatgtcaacacataactCataattgcatttcgaaggaa	5	8	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	186648206	186648206	C	T	SNP	PTGS2	ENST00000367468	human	ensembl	69_37n	-1	known	missense	c.297	p.M99I	1.000	superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal	-	no_errors	PTGS2	HGNC	ENSG00000073756	86	0	0	92	11	10.68	-	-	-	T	186648206	C	T	186648206	3	4	895	1	0	0	0	0	1	0	0	0	12837	826	29	2	1549	2	PTGS2	1	186648206	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	344599	186648206	62602415	30	72631										
NR5A2	0	genome.wustl.edu	37	chr1	200017590	200017590	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttagcatgacaatgccccctCacggcagcctgcaaggttac	9	14	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	200017590	200017590	C	T	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	1	known	missense	c.754	p.H252Y	0.997	superfamily_Nucl_hormone_rcpt_ligand-bd,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	66	0	0	131	39	22.94	-	-	-	T	200017590	C	T	200017590	3	4	895	1	0	0	0	0	1	0	0	0	10709	826	29	2	772	2	NR5A2	1	200017590	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	13369384	200017590	49233031	31	72632										
PIK3C2B	0	genome.wustl.edu	37	chr1	204412635	204412635	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggcggttaaactcttctctCagccccttgccacagcagca	8	15	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	204412635	204412635	C	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.2958	p.L986	0.981	pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	28	0	0	36	20	35.71	-	-	-	A	204412635	C	A	204412635	2	1	895	1	0	0	0	0	0	0	0	1	11984	813	29	2		2	PIK3C2B	1	204412635	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4395045	204412635	44837986	32	72633										
PTPN14	0	genome.wustl.edu	37	chr1	214557650	214557650	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acattattctttgggttcctCtggtcagatggactgacaag	10	8	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	214557650	214557650	C	G	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.1548	p.Q516H	0.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	22	0	0	82	16	16.33	-	-	-	G	214557650	C	G	214557650	3	3	895	1	0	0	0	0	1	0	0	0	12864	912	32	2	2043	2	PTPN14	1	214557650	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10145015	214557650	34692971	33	72634										
DISP1	0	genome.wustl.edu	37	chr1	223177316	223177316	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	attgagacattcaaacagtgGatggaaaaccaggactgtga	11	6	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	223177316	223177316	G	C	SNP	DISP1	ENST00000284476	human	ensembl	69_37n	1	known	missense	c.2577	p.W859C	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309	56	0	0	75	13	14.77	-	-	-	C	223177316	G	C	223177316	3	2	895	1	0	0	0	0	1	0	0	0	4575	1183	41	2	2603	2	DISP1	1	223177316	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8619666	223177316	26073305	34	72635										
SUSD4	0	genome.wustl.edu	37	chr1	223396894	223396894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caagccgccactcacagcttCgtcataggacgggagcatga	11	13	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	223396894	223396894	C	T	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.1141	p.E381K	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	22	0	0	21	18	46.15	-	-	-	T	223396894	C	T	223396894	3	4	895	1	0	0	0	0	1	0	0	0	15501	893	31	1	339	1	SUSD4	1	223396894	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	219578	223396894	25853727	35	72636										
HIST3H3	0	genome.wustl.edu	37	chr1	228612849	228612849	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caacttgcggattagcagctCagtggacttctggtagcggc	13	10	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	228612849	228612849	C	T	SNP	HIST3H3	ENST00000366696	human	ensembl	69_37n	-1	known	missense	c.178	p.E60K	0.999	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST3H3	HGNC	ENSG00000168148	52	0	0	91	32	26.02	-	-	-	T	228612849	C	T	228612849	3	4	895	1	0	0	0	0	1	0	0	0	7235	835	29	2	236	2	HIST3H3	1	228612849	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5215955	228612849	20637772	36	72637										
ABCB10	0	genome.wustl.edu	37	chr1	229683381	229683381	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cctgtgcgagtcttgtcaaaGaaagcaacctcctgcctcag	9	13	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	229683381	229683381	G	C	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.786	p.F262L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	60	0	0	119	19	13.77	-	-	-	C	229683381	G	C	229683381	3	2	895	1	0	0	0	0	1	0	0	0	41	933	33	2	1474	2	ABCB10	1	229683381	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1070532	229683381	19567240	37	72638										
RBM34	0	genome.wustl.edu	37	chr1	235316075	235316075	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tactctttaaaaaacgacttCagcttctaaaattaaaaaaa	2	7	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	235316075	235316075	C	A	SNP	RBM34	ENST00000408888	human	ensembl	69_37n	-1	known	silent	c.603	p.L201	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM34	HGNC	ENSG00000188739	46	0	0	58	10	14.71	-	-	-	A	235316075	C	A	235316075	2	1	895	1	0	0	0	0	0	0	0	1	13214	813	29	2		2	RBM34	1	235316075	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5632694	235316075	13934546	38	72639										
RYR2	0	genome.wustl.edu	37	chr1	237664064	237664064	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aacatctgttaagaactgatGatgtcatcagttgctgttta	8	6	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	237664064	237664064	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2251	p.D751N	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	125	0	0	242	30	11.03	-	-	-	A	237664064	G	A	237664064	3	1	895	1	0	0	0	0	1	0	0	0	13855	1290	45	2	2339	2	RYR2	1	237664064	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2347989	237664064	11586557	39	72640										
ZP4	0	genome.wustl.edu	37	chr1	238053239	238053239	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcagccgcgcctgctccttCaactccaactggcatgatgt	8	15	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	238053239	238053239	C	T	SNP	ZP4	ENST00000366570	human	ensembl	69_37n	-1	known	missense	c.328	p.E110K	0.002	NULL	pfam_Zona_pellucida_Endoglin/CD105,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP4	HGNC	ENSG00000116996	68	0	0	116	27	18.88	-	-	-	T	238053239	C	T	238053239	3	4	895	1	0	0	0	0	1	0	0	0	18311	835	29	2	1334	2	ZP4	1	238053239	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	389175	238053239	11197382	40	72641										
OR2W5	0	genome.wustl.edu	37	chr1	247655373	247655373	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agaaaggggctggggagcctCaacgaggggaacactctagt	16	8	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	247655373	247655373	C	T	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	20	0	0	14	4	22.22	-	-	-	T	247655373	C	T	247655373	1	4	895	0	1	0	0	0	0	0	0	0	11107	838	29	2		2	OR2W5	1	247655373	RNA	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9602134	247655373	1595248	41	72642										
OR2L8	0	genome.wustl.edu	37	chr1	248113011	248113011	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accatcctcaccccaatgctCaaccccatcatctatagcct	2	19	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	248113011	248113011	C	G	SNP	OR2L8	ENST00000357191	human	ensembl	69_37n	1	known	silent	c.852	p.L284	0.968	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	100	0	0	127	51	28.65	-	-	-	G	248113011	C	G	248113011	2	3	895	1	0	0	0	0	0	0	0	1	11082	813	29	2		2	OR2L8	1	248113011	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	457638	248113011	1137610	42	72643										
OR2AK2	0	genome.wustl.edu	37	chr1	248129439	248129439	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggcaagcctgttctatgcaaCcactctctttacctacacaa	5	14	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	248129439	248129439	C	A	SNP	OR2AK2	ENST00000366480	human	ensembl	69_37n	1	known	missense	c.806	p.T269N	0.007	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	118	0	0	204	49	19.37	-	-	-	A	248129439	C	A	248129439	3	1	895	1	0	0	0	0	1	0	0	0	11059	507	18	4	808	4	OR2AK2	1	248129439	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	16428	248129439	1121182	43	72644										
OR2T2	0	genome.wustl.edu	37	chr1	248616623	248616623	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctgtagatcccgagagatCaatcactttttctgtgagat	8	8	4	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	1	248616623	248616623	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.525	p.I175	0.353	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	44	0	0	58	9	13.43	-	-	-	T	248616623	C	T	248616623	2	4	895	1	0	0	0	0	0	0	0	1	11093	816	29	2		2	OR2T2	1	248616623	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	487184	248616623	633998	44	72645										
APOB	0	genome.wustl.edu	37	chr2	21231201	21231201	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttttccctcaatagcatttcCaaaaaacagcatttcactcc	2	13	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	21231201	21231201	C	G	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.8539	p.G2847R	0.003	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	82	0	0	44	30	40	-	-	-	G	21231201	C	G	21231201	3	3	895	1	0	0	0	0	1	0	0	0	787	603	21	4	5168	4	APOB	2	21231201	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		21231201	221968172	45	72646										
GPR113	0	genome.wustl.edu	37	chr2	26538505	26538505	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggggctccctgggtgcctCaggaaccagctcaggttggt	15	12	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	26538505	26538505	C	T	SNP	GPR113	ENST00000311519	human	ensembl	69_37n	-1	putative	silent	c.807	p.L269	0.983	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	39	0	0	23	17	42.5	-	-	-	T	26538505	C	T	26538505	2	4	895	1	0	0	0	0	0	0	0	1	6680	813	29	2		2	GPR113	2	26538505	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5307304	26538505	216660868	46	72647										
SLC5A6	0	genome.wustl.edu	37	chr2	27430197	27430197	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcaggtatcagcagccccaGaaagtagcagcagcccagga	12	12	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	27430197	27430197	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	69_37n	-1	known	silent	c.322	p.L108	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074	26	0	0	23	6	20.69	-	-	-	A	27430197	G	A	27430197	2	1	895	1	0	0	0	0	0	0	0	1	14758	933	33	2		2	SLC5A6	2	27430197	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	891692	27430197	215769176	47	72648										
SNX17	0	genome.wustl.edu	37	chr2	27599541	27599541	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatgccagtgccagtgatgtCcacggcaatttcgccttcga	11	12	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	27599541	27599541	C	T	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	1	known	silent	c.1368	p.V456	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	103	0	0	95	52	35.14	-	-	-	T	27599541	C	T	27599541	2	4	895	1	0	0	0	0	0	0	0	1	14977	842	30	2		2	SNX17	2	27599541	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	169344	27599541	215599832	48	72649										
OXER1	0	genome.wustl.edu	37	chr2	42990854	42990854	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agccccaaagcgccaggtctCatggaggaggtagtagtcca	13	11	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	42990854	42990854	C	G	SNP	OXER1	ENST00000378661	human	ensembl	69_37n	-1	known	missense	c.466	p.E156Q	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881	39	0	0	26	24	48	-	-	-	G	42990854	C	G	42990854	3	3	895	1	0	0	0	0	1	0	0	0	11404	835	29	2	809	2	OXER1	2	42990854	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	15391313	42990854	200208519	49	72650										
CCDC88A	0	genome.wustl.edu	37	chr2	55573390	55573390	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cactttcaagcttatcgactCtgactgctttctctcgaagt	6	12	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	55573390	55573390	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.962	p.R321T	1.000	pfam_HOOK	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	172	0	0	106	41	27.89	-	-	-	G	55573390	C	G	55573390	3	3	895	1	0	0	0	0	1	0	0	0	2890	913	32	2	4745	2	CCDC88A	2	55573390	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	12582536	55573390	187625983	50	72651										
USP34	0	genome.wustl.edu	37	chr2	61622053	61622053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agtttcaggagttccatattCaaagcaatccttcatgagag	8	8	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	61622053	61622053	C	G	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.688	p.E230Q	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	106	0	0	67	27	28.72	-	-	-	G	61622053	C	G	61622053	3	3	895	1	0	0	0	0	1	0	0	0	17162	835	29	2	10256	2	USP34	2	61622053	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6048663	61622053	181577320	51	72652										
AFTPH	0	genome.wustl.edu	37	chr2	64780084	64780084	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gctgtttcttgccaagaggaGacaatattaacaaagtcaga	9	7	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	64780084	64780084	G	C	SNP	AFTPH	ENST00000422803	human	ensembl	69_37n	1	known	missense	c.1476	p.E492D	0.898	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844	123	0	0	72	32	30.77	-	-	-	C	64780084	G	C	64780084	3	2	895	1	0	0	0	0	1	0	0	0	364	933	33	2	1478	2	AFTPH	2	64780084	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3158031	64780084	178419289	52	72653										
ASPRV1	0	genome.wustl.edu	37	chr2	70187836	70187836	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctgaggaggggtcctcctCtatgagctccaggtcaaact	11	11	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	70187836	70187836	C	T	SNP	ASPRV1	ENST00000320256	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	0.996	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,pfscan_Peptidase_A2_cat	-	no_errors	ASPRV1	HGNC	ENSG00000244617	55	0	0	43	12	21.82	-	-	-	T	70187836	C	T	70187836	3	4	895	1	0	0	0	0	1	0	0	0	1062	922	32	2	50	2	ASPRV1	2	70187836	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5407752	70187836	173011537	53	72654										
ASPRV1	0	genome.wustl.edu	37	chr2	70188183	70188183	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccacagagacctgggccccaGagtccaccaggaacctcacg	10	17	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	70188183	70188183	G	A	SNP	ASPRV1	ENST00000320256	human	ensembl	69_37n	-1	known	missense	c.638	p.S213F	0.954	pfam_Peptidase_aspartic_euk-pred,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,pfscan_Peptidase_A2_cat	pfam_Peptidase_aspartic_euk-pred,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,pfscan_Peptidase_A2_cat	-	no_errors	ASPRV1	HGNC	ENSG00000244617	65	0	0	27	17	38.64	-	-	-	A	70188183	G	A	70188183	3	1	895	1	0	0	0	0	1	0	0	0	1062	942	33	2	397	2	ASPRV1	2	70188183	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	347	70188183	173011190	54	72655										
TIA1	0	genome.wustl.edu	37	chr2	70439953	70439953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actccataatttggtcccatCcatggtgcagaagactgtgt	9	10	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	70439953	70439953	C	G	SNP	TIA1	ENST00000433529	human	ensembl	69_37n	-1	known	missense	c.1059	p.W353C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	51	0	0	31	20	39.22	-	-	-	G	70439953	C	G	70439953	3	3	895	1	0	0	0	0	1	0	0	0	15982	856	30	2	105	2	TIA1	2	70439953	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	251770	70439953	172759420	55	72656										
TGOLN2	0	genome.wustl.edu	37	chr2	85554057	85554057	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttgttatcagaagggttggaGatgggcttggaatggtcttt	15	3	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	85554057	85554057	G	A	SNP	TGOLN2	ENST00000377386	human	ensembl	69_37n	-1	known	silent	c.798	p.I266	0.000	NULL	NULL	-	no_errors	TGOLN2	HGNC	ENSG00000152291	107	0	0	57	24	29.63	-	-	-	A	85554057	G	A	85554057	2	1	895	1	0	0	0	0	0	0	0	1	15931	932	33	2		2	TGOLN2	2	85554057	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	15114104	85554057	157645316	56	72657										
POLR1A	0	genome.wustl.edu	37	chr2	86272802	86272802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accagccctgggggtgaactCataaggctcaaagcagggca	13	11	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	86272802	86272802	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.2824	p.E942K	0.996	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	33	0	0	23	14	37.84	-	-	-	T	86272802	C	T	86272802	3	4	895	1	0	0	0	0	1	0	0	0	12283	835	29	2	2398	2	POLR1A	2	86272802	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	718745	86272802	156926571	57	72658										
EIF2AK3	0	genome.wustl.edu	37	chr2	88857341	88857341	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaggagcgagacctctgtctGagcactgtttttcctggaaa	11	9	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	88857341	88857341	G	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	silent	c.3264	p.L1088	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	171	0	0	138	61	30.65	-	-	-	A	88857341	G	A	88857341	2	1	895	1	0	0	0	0	0	0	0	1	5033	1277	45	2		2	EIF2AK3	2	88857341	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2584539	88857341	154342032	58	72659										
MAP4K4	0	genome.wustl.edu	37	chr2	102456320	102456320	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttatagaagggtgcctggtGaagaattacatgcagcggcc	13	7	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	102456320	102456320	G	A	SNP	MAP4K4	ENST00000421882	human	ensembl	69_37n	1	novel	missense	c.31	p.E11K	1.000	superfamily_Kinase-like_dom	pfam_Citron,superfamily_Kinase-like_dom,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K4	HGNC	ENSG00000071054	120	0	0	66	30	31.25	-	-	-	A	102456320	G	A	102456320	3	1	895	1	0	0	0	0	1	0	0	0	9333	1277	45	2	851	2	MAP4K4	2	102456320	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	13598979	102456320	140743053	59	72660										
MAP4K4	0	genome.wustl.edu	37	chr2	102456440	102456440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	catatagatcgtaccaggaaGaagagaggcgagaaaggtac	13	6	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	102456440	102456440	G	A	SNP	MAP4K4	ENST00000421882	human	ensembl	69_37n	1	novel	missense	c.151	p.E51K	1.000	superfamily_Kinase-like_dom	pfam_Citron,superfamily_Kinase-like_dom,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K4	HGNC	ENSG00000071054	68	0	0	27	11	28.95	-	-	-	A	102456440	G	A	102456440	3	1	895	1	0	0	0	0	1	0	0	0	9333	933	33	2	971	2	MAP4K4	2	102456440	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	120	102456440	140742933	60	72661										
RANBP2	0	genome.wustl.edu	37	chr2	109389434	109389434	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttttttgtggagtctgtagtGatactgatgaagacaatgga	12	3	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	109389434	109389434	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.8224	p.D2742N	1.000	pfam_IR1-M	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	123	0	0	55	32	36.78	-	-	-	A	109389434	G	A	109389434	3	1	895	1	0	0	0	0	1	0	0	0	13111	1290	45	2	8314	2	RANBP2	2	109389434	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6932994	109389434	133809939	61	72662										
TANC1	0	genome.wustl.edu	37	chr2	160035418	160035418	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcatgacccagtccgcctttGagagggcacttccgattctc	9	14	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	160035418	160035418	G	C	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	missense	c.2254	p.E752Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	48	0	0	17	8	32	-	-	-	C	160035418	G	C	160035418	3	2	895	1	0	0	0	0	1	0	0	0	15636	1291	45	2	2300	2	TANC1	2	160035418	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	50645984	160035418	83163955	62	72663										
BAZ2B	0	genome.wustl.edu	37	chr2	160176856	160176856	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agctctgcctatatcagaatCatcttcattaaatgtttcac	4	10	6	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	160176856	160176856	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.6427	p.D2143N	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	112	0	0	76	31	28.97	-	-	-	T	160176856	C	T	160176856	3	4	895	1	0	0	0	0	1	0	0	0	1336	826	29	2	83	2	BAZ2B	2	160176856	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	141438	160176856	83022517	63	72664										
SCN7A	0	genome.wustl.edu	37	chr2	167273255	167273255	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaaaccatttccaacattatCaaagttcatttttgcatttt	3	8	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	167273255	167273255	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.3376	p.D1126N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	100	0	0	57	21	26.92	-	-	-	T	167273255	C	T	167273255	3	4	895	1	0	0	0	0	1	0	0	0	14011	826	29	2	1696	2	SCN7A	2	167273255	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	7096399	167273255	75926118	64	72665										
TTN	0	genome.wustl.edu	37	chr2	179426201	179426201	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctcatacatcagtccttcatCaaggccggagactttcattt	6	12	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	179426201	179426201	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.76954	p.D25652N	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	93	0	0	59	13	18.06	-	-	-	T	179426201	C	T	179426201	3	4	895	1	0	0	0	0	1	0	0	0	16832	826	29	2	23469	2	TTN	2	179426201	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	12152946	179426201	63773172	65	72666										
TTN	0	genome.wustl.edu	37	chr2	179427679	179427679	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caatcaccaacattgtaaatGagctggtcacctctatctga	6	11	4	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	179427679	179427679	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.75476	p.S25159*	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	56	0	0	34	21	38.18	-	-	-	C	179427679	G	C	179427679	4	2	895	1	0	0	0	0	0	1	0	0	16832	1294	45	2	24947	2	TTN	2	179427679	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1478	179427679	63771694	66	72667										
PMS1	0	genome.wustl.edu	37	chr2	190660667	190660667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agccttggggtcaatttgttGtatagctgaggtaaggtaat	13	4	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	190660667	190660667	G	A	SNP	PMS1	ENST00000441310	human	ensembl	69_37n	1	known	missense	c.305	p.C102Y	0.992	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_superfamily,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	125	0	0	80	36	31.03	-	-	-	A	190660667	G	A	190660667	3	1	895	1	0	0	0	0	1	0	0	0	12216	1377	48	4	311	4	PMS1	2	190660667	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	11232988	190660667	52538706	67	72668										
MFSD6	0	genome.wustl.edu	37	chr2	191354510	191354510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ataggggctgctgcaaccttCcgaggaattggcatggcctg	14	10	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	191354510	191354510	C	T	SNP	MFSD6	ENST00000434582	human	ensembl	69_37n	1	novel	missense	c.415	p.P139S	1.000	pfam_MFS,pfam_MFS_enterobactin_exp_EntS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_MFS_enterobactin_exp_EntS,superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MFSD6	HGNC	ENSG00000151690	133	0	0	93	51	35.42	-	-	-	T	191354510	C	T	191354510	3	4	895	1	0	0	0	0	1	0	0	0	9606	854	30	2	1823	2	MFSD6	2	191354510	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	693843	191354510	51844863	68	72669										
HECW2	0	genome.wustl.edu	37	chr2	197183447	197183447	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtcaggtacagtggccgattCtgcccctggcccttcatcct	10	15	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	197183447	197183447	C	T	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.2167	p.E723K	0.877	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	22	0	0	10	10	50	-	-	-	T	197183447	C	T	197183447	3	4	895	1	0	0	0	0	1	0	0	0	7094	922	32	2	2635	2	HECW2	2	197183447	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5828937	197183447	46015926	69	72670										
RFTN2	0	genome.wustl.edu	37	chr2	198498526	198498526	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcatgatgaagttcttcctCaattccgctttcagatgact	6	10	4	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	198498526	198498526	C	A	SNP	RFTN2	ENST00000295049	human	ensembl	69_37n	-1	known	nonsense	c.634	p.E212*	0.614	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	156	0	0	147	62	29.67	-	-	-	A	198498526	C	A	198498526	4	1	895	1	0	0	0	0	0	1	0	0	13342	835	29	2	895	2	RFTN2	2	198498526	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1315079	198498526	44700847	70	72671										
TUBA4A	0	genome.wustl.edu	37	chr2	220115948	220115948	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atttcttgccatagtcaacaGagagccgctccatcaggagt	9	11	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	220115948	220115948	G	C	SNP	TUBA4A	ENST00000248437	human	ensembl	69_37n	-1	known	missense	c.473	p.S158C	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA4A	HGNC	ENSG00000127824	50	0	0	27	17	38.64	-	-	-	C	220115948	G	C	220115948	3	2	895	1	0	0	0	0	1	0	0	0	16846	942	33	2	877	2	TUBA4A	2	220115948	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	21617422	220115948	23083425	71	72672										
DNPEP	0	genome.wustl.edu	37	chr2	220247855	220247855	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccagaaccctccacgtacctCttcgttgtcatagagtgtga	8	13	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	220247855	220247855	C	G	SNP	DNPEP	ENST00000273075	human	ensembl	69_37n	-1	known	missense	c.934	p.E312Q	1.000	pfam_Peptidase_M18,prints_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992	53	0	0	29	10	25.64	-	-	-	G	220247855	C	G	220247855	3	3	895	1	0	0	0	0	1	0	0	0	4714	922	32	2	547	2	DNPEP	2	220247855	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	131907	220247855	22951518	72	72673										
SAG	0	genome.wustl.edu	37	chr2	234237145	234237145	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agctccgtgcgattactgatCcgcaaagtacagcatgcccc	9	14	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	234237145	234237145	C	T	SNP	SAG	ENST00000409110	human	ensembl	69_37n	1	known	silent	c.534	p.I178	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set,prints_Arrestin	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561	40	0	0	36	9	20	-	-	-	T	234237145	C	T	234237145	2	4	895	1	0	0	0	0	0	0	0	1	13894	845	30	2		2	SAG	2	234237145	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	13989290	234237145	8962228	73	72674										
THAP4	0	genome.wustl.edu	37	chr2	242572453	242572453	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accctctgccgcaggctcttCagctcgccgttcttcttctc	7	18	6	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	2	242572453	242572453	C	T	SNP	THAP4	ENST00000407315	human	ensembl	69_37n	-1	known	silent	c.1119	p.L373	0.048	NULL	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946	26	0	0	19	17	47.22	-	-	-	T	242572453	C	T	242572453	2	4	895	1	0	0	0	0	0	0	0	1	15941	813	29	2		2	THAP4	2	242572453	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	8335308	242572453	626920	74	72675										
STT3B	0	genome.wustl.edu	37	chr3	31661244	31661244	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cttgggtgtctttcttctttGatctacatattcttgtatgt	7	7	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	31661244	31661244	G	A	SNP	STT3B	ENST00000295770	human	ensembl	69_37n	1	known	missense	c.1249	p.D417N	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527	221	0	0	146	51	25.89	-	-	-	A	31661244	G	A	31661244	3	1	895	1	0	0	0	0	1	0	0	0	15425	1290	45	2	1283	2	STT3B	3	31661244	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		31661244	166361186	75	72676										
CTDSPL	0	genome.wustl.edu	37	chr3	37988634	37988634	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcttccgtgattacaatgtgGaggcccctccacccagcagc	10	15	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	37988634	37988634	G	C	SNP	CTDSPL	ENST00000273179	human	ensembl	69_37n	1	known	missense	c.166	p.E56Q	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL	HGNC	ENSG00000144677	30	0	0	20	9	31.03	-	-	-	C	37988634	G	C	37988634	3	2	895	1	0	0	0	0	1	0	0	0	4037	1175	41	2	172	2	CTDSPL	3	37988634	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6327390	37988634	160033796	76	72677										
ULK4	0	genome.wustl.edu	37	chr3	41938469	41938469	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caaaaagtcattccaatcttGatctttcagaaataataact	3	8	4	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	41938469	41938469	G	C	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	missense	c.1375	p.Q459E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	18	0	0	14	5	26.32	-	-	-	C	41938469	G	C	41938469	3	2	895	1	0	0	0	0	1	0	0	0	17075	1299	45	2	2544	2	ULK4	3	41938469	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3949835	41938469	156083961	77	72678										
SETD2	0	genome.wustl.edu	37	chr3	47158173	47158173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgctatttcaccttgagctCtttcatctttagaaagaggt	7	8	4	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	47158173	47158173	C	G	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	missense	c.4526	p.R1509T	1.000	smart_AWS,pfscan_AWS	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	128	0	0	40	24	37.5	-	-	-	G	47158173	C	G	47158173	3	3	895	1	0	0	0	0	1	0	0	0	14219	913	32	2	3240	2	SETD2	3	47158173	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5219704	47158173	150864257	78	72679										
MAP4	0	genome.wustl.edu	37	chr3	47957724	47957724	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggaggcagacatacgttcttGatgagaactacttctgtttc	10	8	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	47957724	47957724	G	A	SNP	MAP4	ENST00000360240	human	ensembl	69_37n	-1	known	silent	c.1593	p.I531	0.038	NULL	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	113	0	0	76	23	23.23	-	-	-	A	47957724	G	A	47957724	2	1	895	1	0	0	0	0	0	0	0	1	9329	1280	45	2		2	MAP4	3	47957724	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	799551	47957724	150064706	79	72680										
CELSR3	0	genome.wustl.edu	37	chr3	48694738	48694738	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agcaactcctccgtgatgatGaccacgcgcagcacacactg	9	15	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	48694738	48694738	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	silent	c.3792	p.V1264	1.000	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	13	0	0	12	7	36.84	-	-	-	A	48694738	G	A	48694738	2	1	895	1	0	0	0	0	0	0	0	1	3252	1277	45	2		2	CELSR3	3	48694738	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	737014	48694738	149327692	80	72681										
GRM2	0	genome.wustl.edu	37	chr3	51747097	51747097	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaattctgggagcagaggttCcgctgcagcttccggcagcg	15	11	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	51747097	51747097	C	G	SNP	GRM2	ENST00000395052	human	ensembl	69_37n	1	known	missense	c.1059	p.F353L	0.688	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082	24	0	0	10	4	28.57	-	-	-	G	51747097	C	G	51747097	3	3	895	1	0	0	0	0	1	0	0	0	6848	854	30	2	1065	2	GRM2	3	51747097	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3052359	51747097	146275333	81	72682										
FRMD4B	0	genome.wustl.edu	37	chr3	69230351	69230351	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaggatctgctgtagtccctCtggcgctcatatccatagtg	10	11	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	69230351	69230351	C	G	SNP	FRMD4B	ENST00000398540	human	ensembl	69_37n	-1	known	missense	c.2550	p.Q850H	0.102	NULL	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD4B	HGNC	ENSG00000114541	58	0	0	42	15	26.32	-	-	-	G	69230351	C	G	69230351	3	3	895	1	0	0	0	0	1	0	0	0	6101	912	32	2	566	2	FRMD4B	3	69230351	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	17483254	69230351	128792079	82	72683										
GXYLT2	0	genome.wustl.edu	37	chr3	73004303	73004303	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggacaccgatgtcctctttCtgagacctgttgatgacatc	9	11	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	73004303	73004303	C	T	SNP	GXYLT2	ENST00000389617	human	ensembl	69_37n	1	known	silent	c.655	p.L219	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT2	HGNC	ENSG00000172986	66	0	0	32	19	37.25	-	-	-	T	73004303	C	T	73004303	2	4	895	1	0	0	0	0	0	0	0	1	6955	912	32	2		2	GXYLT2	3	73004303	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3773952	73004303	125018127	83	72684										
ROBO2	0	genome.wustl.edu	37	chr3	77617518	77617518	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcaagtgcagaaagagctagGagatgtccttgtccgtcttc	12	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	77617518	77617518	G	C	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	missense	c.1904	p.G635A	0.999	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	79	0	0	32	28	46.67	-	-	-	C	77617518	G	C	77617518	3	2	895	1	0	0	0	0	1	0	0	0	13600	1174	41	2	1956	2	ROBO2	3	77617518	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4613215	77617518	120404912	84	72685										
ROBO1	0	genome.wustl.edu	37	chr3	79639053	79639053	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accaaaaaaggaacatgtttCcatttcatctttgtcccttc	4	11	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	79639053	79639053	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.9	p.W3C	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	91	0	0	43	21	32.81	-	-	-	G	79639053	C	G	79639053	3	3	895	1	0	0	0	0	1	0	0	0	13599	856	30	2	5138	2	ROBO1	3	79639053	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2021535	79639053	118383377	85	72686										
ROPN1B	0	genome.wustl.edu	37	chr3	125696002	125696002	+	Frame_Shift_Del	DEL	G	G	-													0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcccttgcttgcagcgctctGggagttgtaagttagcttga							TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	125696002	125696002	G	-	DEL	ROPN1B	ENST00000251776	human	ensembl	69_37n	1	known	frame_shift_del	c.390	p.G131fs	0.990	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547	34	0	0	18	9	33.33	-	-	-	-	125696002	G	-	125696002	7	5	895	1	0	1	0	1	0	0	0	0	13610	1335	47	0	400	0	ROPN1B	3	125696002	Frame_Shift_Del	DEL	G	TCGA-EW-A1J5-01A-11D-A13L-09	46056949	125696002	72326428	86	72687										
PLXNA1	0	genome.wustl.edu	37	chr3	126751260	126751260	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cgcttctgggtgaacgtgatCaagaacccacagtttgtgtt	11	9	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	126751260	126751260	C	G	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	1	known	missense	c.5262	p.I1754M	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	64	0	0	79	29	26.85	-	-	-	G	126751260	C	G	126751260	3	3	895	1	0	0	0	0	1	0	0	0	12193	816	29	2	5376	2	PLXNA1	3	126751260	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1055258	126751260	71271170	87	72688										
TF	0	genome.wustl.edu	37	chr3	133473506	133473506	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacctgagccacgtaaacctCttgagaaaggtaagctggca	10	10	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	133473506	133473506	C	G	SNP	TF	ENST00000402696	human	ensembl	69_37n	1	known	missense	c.493	p.L165V	0.061	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	TF	HGNC	ENSG00000091513	32	0	0	38	17	30.91	-	-	-	G	133473506	C	G	133473506	3	3	895	1	0	0	0	0	1	0	0	0	15880	913	32	2	507	2	TF	3	133473506	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6722246	133473506	64548924	88	72689										
SRPRB	0	genome.wustl.edu	37	chr3	133530017	133530017	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagagtttgaggcttcagttCttagagcggtttaagtcttc	12	6	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	133530017	133530017	C	A	SNP	SRPRB	ENST00000466490	human	ensembl	69_37n	1	known	missense	c.384	p.F128L	1.000	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA	-	no_errors	SRPRB	HGNC	ENSG00000144867	110	0	0	78	47	37.6	-	-	-	A	133530017	C	A	133530017	3	1	895	1	0	0	0	0	1	0	0	0	15254	912	32	2	398	2	SRPRB	3	133530017	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	56511	133530017	64492413	89	72690										
CEP63	0	genome.wustl.edu	37	chr3	134266255	134266255	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacagtgtgctctcccagttGaattttacccatactagtga	8	10	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	134266255	134266255	G	A	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	1	known	silent	c.1008	p.L336	0.998	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	84	0	0	55	18	24.66	-	-	-	A	134266255	G	A	134266255	2	1	895	1	0	0	0	0	0	0	0	1	3286	1281	45	2		2	CEP63	3	134266255	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	736238	134266255	63756175	90	72691										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	106	0	0	52	24	31.58	-	-	-	A	178936091	G	A	178936091	3	1	895	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	44669836	178936091	19086339	91	72692										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	87	0	0	43	20	31.75	-	-	-	A	178938934	G	A	178938934	3	1	895	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2843	178938934	19083496	92	72693										
MAP3K13	0	genome.wustl.edu	37	chr3	185198077	185198077	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctttagctctgagaatttCtctgtgtctgatggagaaga	10	7	3	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	185198077	185198077	C	G	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	1	known	missense	c.2559	p.F853L	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	27	0	0	31	20	39.22	-	-	-	G	185198077	C	G	185198077	3	3	895	1	0	0	0	0	1	0	0	0	9318	912	32	2	2605	2	MAP3K13	3	185198077	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6259143	185198077	12824353	93	72694										
IL1RAP	0	genome.wustl.edu	37	chr3	190366258	190366258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcctagaaaatatggcctctCggggcaacatcaacgtcatt	9	11	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	190366258	190366258	C	T	SNP	IL1RAP	ENST00000072516	human	ensembl	69_37n	1	known	missense	c.1477	p.R493W	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,prints_IL1_rcpt_1	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL1RAP	HGNC	ENSG00000196083	54	0	0	44	15	25.42	-	-	-	T	190366258	C	T	190366258	3	4	895	1	0	0	0	0	1	0	0	0	7714	875	31	1	1535	1	IL1RAP	3	190366258	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5168181	190366258	7656172	94	72695										
ATP13A5	0	genome.wustl.edu	37	chr3	193032846	193032846	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcaagcgattctccatgatGagaagtcccagaaatgttaa	8	8	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	3	193032846	193032846	G	A	SNP	ATP13A5	ENST00000342358	human	ensembl	69_37n	-1	known	silent	c.2073	p.L691	0.947	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC	ENSG00000187527	70	0	0	38	15	28.3	-	-	-	A	193032846	G	A	193032846	2	1	895	1	0	0	0	0	0	0	0	1	1131	1277	45	2		2	ATP13A5	3	193032846	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2666588	193032846	4989584	95	72696										
CRMP1	0	genome.wustl.edu	37	chr4	5830269	5830269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctccgggaacgccttccgcgGaatgaagcggcccatgccct	12	16	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	5830269	5830269	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	69_37n	-1	known	missense	c.1750	p.P584S	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832	44	0	0	43	15	25.86	-	-	-	A	5830269	G	A	5830269	3	1	895	1	0	0	0	0	1	0	0	0	3920	1174	41	2	322	2	CRMP1	4	5830269	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		5830269	185324007	96	72697										
STIM2	0	genome.wustl.edu	37	chr4	27009196	27009196	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccgaaaaagaatttgaactGagaagcagttggtctgttcc	11	7	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	27009196	27009196	G	T	SNP	STIM2	ENST00000382009	human	ensembl	69_37n	1	known	silent	c.1284	p.L428	0.983	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689	81	0	0	45	18	28.57	-	-	-	T	27009196	G	T	27009196	2	4	895	1	0	0	0	0	0	0	0	1	15375	1277	45	2		2	STIM2	4	27009196	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	21178927	27009196	164145080	97	72698										
PGM2	0	genome.wustl.edu	37	chr4	37841763	37841763	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagctattgaagaaaatctaGaaccgtggcctcaagcttgg	10	8	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	37841763	37841763	G	C	SNP	PGM2	ENST00000381967	human	ensembl	69_37n	1	known	missense	c.601	p.E201Q	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299	47	0	0	48	19	28.36	-	-	-	C	37841763	G	C	37841763	3	2	895	1	0	0	0	0	1	0	0	0	11872	943	33	2	623	2	PGM2	4	37841763	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10832567	37841763	153312513	98	72699										
GRXCR1	0	genome.wustl.edu	37	chr4	42895457	42895457	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atagatggactaggtgattcCgatggacagcagaatggcca	13	7	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	42895457	42895457	C	T	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	1	known	silent	c.174	p.S58	0.953	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	79	0	0	78	21	21.21	-	-	-	T	42895457	C	T	42895457	2	4	895	1	0	0	0	0	0	0	0	1	6863	639	23	1		1	GRXCR1	4	42895457	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5053694	42895457	148258819	99	72700										
TXK	0	genome.wustl.edu	37	chr4	48076019	48076019	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acttcaggaggggaccacttGattgggaacttggctccaaa	12	9	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	48076019	48076019	G	C	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	missense	c.1290	p.I430M	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	62	0	0	45	23	33.82	-	-	-	C	48076019	G	C	48076019	3	2	895	1	0	0	0	0	1	0	0	0	16883	1280	45	2	305	2	TXK	4	48076019	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5180562	48076019	143078257	100	72701										
LPHN3	0	genome.wustl.edu	37	chr4	62897274	62897274	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcctatctcttcaccattttCaattctctacagggaatgtt	5	11	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	62897274	62897274	C	T	SNP	LPHN3	ENST00000502815	human	ensembl	69_37n	1	known	nonsense	c.1678	p.Q560*	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,prints_GPCR_2_latrophilin,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LPHN3	HGNC	ENSG00000150471	132	0	0	72	29	28.71	-	-	-	T	62897274	C	T	62897274	4	4	895	1	0	0	0	0	0	1	0	0	8983	825	29	2	3411	2	LPHN3	4	62897274	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	14821255	62897274	128257002	101	72702										
RUFY3	0	genome.wustl.edu	37	chr4	71654529	71654529	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctttgggggcaggatgttGagaaagaactggagatgcag	16	5	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	71654529	71654529	G	A	SNP	RUFY3	ENST00000417478	human	ensembl	69_37n	1	known	missense	c.1258	p.E420K	1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189	84	0	0	50	30	37.5	-	-	-	A	71654529	G	A	71654529	3	1	895	1	0	0	0	0	1	0	0	0	13826	1291	45	2	1482	2	RUFY3	4	71654529	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8757255	71654529	119499747	102	72703										
LIN54	0	genome.wustl.edu	37	chr4	83905683	83905683	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gctgatatagtcacaggagtCtgagcaccaagtttttgaag	11	7	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	83905683	83905683	C	G	SNP	LIN54	ENST00000340417	human	ensembl	69_37n	-1	known	missense	c.315	p.Q105H	1.000	NULL	pfam_TCR	-	no_errors	LIN54	HGNC	ENSG00000189308	199	0	0	173	83	32.3	-	-	-	G	83905683	C	G	83905683	3	3	895	1	0	0	0	0	1	0	0	0	8865	912	32	2	1982	2	LIN54	4	83905683	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	12251154	83905683	107248593	103	72704										
HERC6	0	genome.wustl.edu	37	chr4	89334350	89334350	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatgcatgattctaagaactGgaagaacctggtggttccat	11	7	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	89334350	89334350	G	A	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	1	known	nonsense	c.1490	p.W497*	0.196	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	113	0	0	62	30	32.61	-	-	-	A	89334350	G	A	89334350	4	1	895	1	0	0	0	0	0	1	0	0	7113	1357	47	4	1333	4	HERC6	4	89334350	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5428667	89334350	101819926	104	72705										
COL25A1	0	genome.wustl.edu	37	chr4	110222887	110222887	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agcctctcacacctgagccaGaagtcgctccactttctctt	6	16	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	110222887	110222887	G	C	SNP	COL25A1	ENST00000399132	human	ensembl	69_37n	-1	known	missense	c.289	p.L97V	1.000	NULL	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517	81	0	0	74	33	30.84	-	-	-	C	110222887	G	C	110222887	3	2	895	1	0	0	0	0	1	0	0	0	3714	933	33	2	1903	2	COL25A1	4	110222887	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	20888537	110222887	80931389	105	72706										
NDST3	0	genome.wustl.edu	37	chr4	118975584	118975584	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actagtgagaagagtgtacaGagctttcagttaaaaggttt	11	4	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	118975584	118975584	G	C	SNP	NDST3	ENST00000296499	human	ensembl	69_37n	1	known	missense	c.519	p.Q173H	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC	ENSG00000164100	42	0	0	20	5	20	-	-	-	C	118975584	G	C	118975584	3	2	895	1	0	0	0	0	1	0	0	0	10329	933	33	2	521	2	NDST3	4	118975584	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8752697	118975584	72178692	106	72707										
FAT4	0	genome.wustl.edu	37	chr4	126369700	126369700	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctctttcgggtagaaattCtgaaaaatttcacattgacc	6	8	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	126369700	126369700	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.7529	p.S2510F	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	59	0	0	44	15	25.42	-	-	-	T	126369700	C	T	126369700	3	4	895	1	0	0	0	0	1	0	0	0	5738	913	32	2	7563	2	FAT4	4	126369700	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	7394116	126369700	64784576	107	72708										
FAT1	0	genome.wustl.edu	37	chr4	187628122	187628122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accagactgacctaaatcagGatcgtgggcttctaaccaca	8	12	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	4	187628122	187628122	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.2860	p.P954S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	59	0	0	38	18	32.14	-	-	-	A	187628122	G	A	187628122	3	1	895	1	0	0	0	0	1	0	0	0	5735	1174	41	2	11010	2	FAT1	4	187628122	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	61258422	187628122	3526154	108	72709										
FAM105A	0	genome.wustl.edu	37	chr5	14601228	14601228	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttatattcagggcacaagctGaaatggtaggtcactgtatc	10	7	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	14601228	14601228	G	A	SNP	FAM105A	ENST00000274217	human	ensembl	69_37n	1	known	silent	c.219	p.L73	0.992	NULL	prints_FAM105,prints_FAM105A	-	no_errors	FAM105A	HGNC	ENSG00000145569	97	0	0	63	35	35.71	-	-	-	A	14601228	G	A	14601228	2	1	895	1	0	0	0	0	0	0	0	1	5427	1277	45	2		2	FAM105A	5	14601228	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		14601228	166314032	109	72710										
RAI14	0	genome.wustl.edu	37	chr5	34813753	34813753	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaagctccaccacctcctatCagtcctacccaggtaaaaac	4	16	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	34813753	34813753	C	G	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	1	known	missense	c.849	p.I283M	1.000	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	155	0	0	111	31	21.83	-	-	-	G	34813753	C	G	34813753	3	3	895	1	0	0	0	0	1	0	0	0	13091	816	29	2	943	2	RAI14	5	34813753	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	20212525	34813753	146101507	110	72711										
PIK3R1	0	genome.wustl.edu	37	chr5	67590481	67590481	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acatagaaaagtttaaacgtGaaggcaatgagaaagaaata	9	3	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	67590481	67590481	G	A	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	1	known	missense	c.1543	p.E515K	1.000	superfamily_Guanylate-bd_C,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	72	0	0	46	21	31.34	-	-	-	A	67590481	G	A	67590481	3	1	895	1	0	0	0	0	1	0	0	0	11992	1291	45	2	1715	2	PIK3R1	5	67590481	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	32776728	67590481	113324779	111	72712										
DMGDH	0	genome.wustl.edu	37	chr5	78350099	78350099	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccagccagtccgagtcatttGatatttaaattcatctaccc	5	12	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	78350099	78350099	G	A	SNP	DMGDH	ENST00000255189	human	ensembl	69_37n	-1	known	nonsense	c.448	p.Q150*	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837	114	0	0	58	27	31.76	-	-	-	A	78350099	G	A	78350099	4	1	895	1	0	0	0	0	0	1	0	0	4617	1299	45	2	2204	2	DMGDH	5	78350099	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10759618	78350099	102565161	112	72713										
XRCC4	0	genome.wustl.edu	37	chr5	82491606	82491606	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tagttcagacttggttccttCaacctagagaaagttgaaaa	8	7	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	82491606	82491606	C	T	SNP	XRCC4	ENST00000338635	human	ensembl	69_37n	1	known	silent	c.333	p.F111	0.994	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	pfam_DNA_ds_break_repair_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422	119	0	0	76	21	21.65	-	-	-	T	82491606	C	T	82491606	2	4	895	1	0	0	0	0	0	0	0	1	17552	825	29	2		2	XRCC4	5	82491606	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4141507	82491606	98423654	113	72714										
WDR36	0	genome.wustl.edu	37	chr5	110454814	110454814	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggaccaccttggaatttatCtatggtaagttctttcatac	7	8	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	110454814	110454814	C	G	SNP	WDR36	ENST00000506538	human	ensembl	69_37n	1	known	missense	c.2068	p.L690V	0.979	smart_WD40_repeat	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	150	1	0.66	97	19	16.38	-	-	-	G	110454814	C	G	110454814	3	3	895	1	0	0	0	0	1	0	0	0	17387	912	32	2	2134	2	WDR36	5	110454814	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	27963208	110454814	70460446	114	72715										
CAMK4	0	genome.wustl.edu	37	chr5	110712636	110712636	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcacaggaggagaactgtttGataggtgagttggttctgga	15	4	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	110712636	110712636	G	C	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	1	known	missense	c.382	p.D128H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	98	0	0	36	19	34.55	-	-	-	C	110712636	G	C	110712636	3	2	895	1	0	0	0	0	1	0	0	0	2630	1290	45	2	396	2	CAMK4	5	110712636	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	257822	110712636	70202624	115	72716										
CAMK4	0	genome.wustl.edu	37	chr5	110814119	110814119	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tctatgatgaaagaggcgatCagttcatgttcaggagaatt	11	5	4	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	110814119	110814119	C	T	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	1	known	nonsense	c.742	p.Q248*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	76	0	0	46	14	23.33	-	-	-	T	110814119	C	T	110814119	4	4	895	1	0	0	0	0	0	1	0	0	2630	827	29	2	776	2	CAMK4	5	110814119	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	101483	110814119	70101141	116	72717										
EPB41L4A	0	genome.wustl.edu	37	chr5	111531377	111531377	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cctcctcctttgcttaagatCtgaatcttcaccactgttat	4	13	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	111531377	111531377	C	G	SNP	EPB41L4A	ENST00000261486	human	ensembl	69_37n	-1	known	missense	c.1405	p.D469H	0.997	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	206	0	0	209	87	29.39	-	-	-	G	111531377	C	G	111531377	3	3	895	1	0	0	0	0	1	0	0	0	5192	913	32	2	687	2	EPB41L4A	5	111531377	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	717258	111531377	69383883	117	72718										
RAPGEF6	0	genome.wustl.edu	37	chr5	130846097	130846097	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggatctgttcgatcaatctCttcatcttcctcttcgtcat	5	12	7	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	130846097	130846097	C	T	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.715	p.E239K	1.000	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	109	0	0	63	28	30.77	-	-	-	T	130846097	C	T	130846097	3	4	895	1	0	0	0	0	1	0	0	0	13131	922	32	2	4660	2	RAPGEF6	5	130846097	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	19314720	130846097	50069163	118	72719										
DDX46	0	genome.wustl.edu	37	chr5	134164380	134164380	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccaaccaacaaataaaggaaGatacaaagtcttatagacat	5	8	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	134164380	134164380	G	A	SNP	DDX46	ENST00000452510	human	ensembl	69_37n	1	known	missense	c.3083	p.R1028K	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833	104	0	0	56	12	17.65	-	-	-	A	134164380	G	A	134164380	3	1	895	1	0	0	0	0	1	0	0	0	4395	942	33	2	3170	2	DDX46	5	134164380	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3318283	134164380	46750880	119	72720										
FAM13B	0	genome.wustl.edu	37	chr5	137289107	137289107	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgaccagctgataaggtgttCtgtcctctctcttttcatct	7	11	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	137289107	137289107	C	G	SNP	FAM13B	ENST00000033079	human	ensembl	69_37n	-1	known	missense	c.1700	p.R567T	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	181	0	0	163	49	23.11	-	-	-	G	137289107	C	G	137289107	3	3	895	1	0	0	0	0	1	0	0	0	5493	913	32	2	1083	2	FAM13B	5	137289107	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3124727	137289107	43626153	120	72721										
TMCO6	0	genome.wustl.edu	37	chr5	140022222	140022222	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatatgccttgtcccagcttCtacaggctgaggaagctcca	10	12	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	140022222	140022222	C	T	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	1	known	silent	c.655	p.L219	0.965	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	56	0	0	40	19	32.2	-	-	-	T	140022222	C	T	140022222	2	4	895	1	0	0	0	0	0	0	0	1	16095	912	32	2		2	TMCO6	5	140022222	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2733115	140022222	40893038	121	72722										
HARS	0	genome.wustl.edu	37	chr5	140070834	140070834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccttctgctgcttgaggcctCgcacgcgctctccctgaagt	10	16	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	140070834	140070834	C	T	SNP	HARS	ENST00000504156	human	ensembl	69_37n	-1	known	missense	c.56	p.R19Q	1.000	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_His-tRNA_synth_IIA,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-synth_IIa_subgr	-	no_errors	HARS	HGNC	ENSG00000170445	24	0	0	21	7	25	-	-	-	T	140070834	C	T	140070834	3	4	895	1	0	0	0	0	1	0	0	0	7010	884	31	1	1525	1	HARS	5	140070834	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	48612	140070834	40844426	122	72723										
PCDHGA2	0	genome.wustl.edu	37	chr5	140718650	140718650	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcgctattctgtgcgggaaGagatcgacagaggctccttc	12	10	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	140718650	140718650	G	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.112	p.E38Q	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	57	0	0	37	13	26	-	-	-	C	140718650	G	C	140718650	3	2	895	1	0	0	0	0	1	0	0	0	11627	943	33	2	114	2	PCDHGA2	5	140718650	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	647816	140718650	40196610	123	72724										
PCDHGB7	0	genome.wustl.edu	37	chr5	140798462	140798462	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acgaaaacgacaacagcccaGaaataatcatcacgtcactc	5	13	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	140798462	140798462	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.1036	p.E346K	0.988	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	61	0	0	44	23	34.33	-	-	-	A	140798462	G	A	140798462	3	1	895	1	0	0	0	0	1	0	0	0	11641	943	33	2	1038	2	PCDHGB7	5	140798462	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	79812	140798462	40116798	124	72725										
SPARC	0	genome.wustl.edu	37	chr5	151046073	151046073	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctcatggatcttcttcacctGagggagtagagactgtgtgt	12	8	4	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	151046073	151046073	G	A	SNP	SPARC	ENST00000537849	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPARC	HGNC	ENSG00000113140	52	0	0	25	11	30.56	-	-	-	A	151046073	G	A	151046073	1	1	895	0	1	0	0	0	0	0	0	0	15086	1305	45	2		2	SPARC	5	151046073	RNA	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10247611	151046073	29869187	125	72726										
EBF1	0	genome.wustl.edu	37	chr5	158139314	158139314	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcggcacgtacccgtgtggtGatacgctgcttgagttgcgg	15	10	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	158139314	158139314	G	A	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	missense	c.1397	p.S466L	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	76	0	0	39	13	25	-	-	-	A	158139314	G	A	158139314	3	1	895	1	0	0	0	0	1	0	0	0	4915	1294	45	2	390	2	EBF1	5	158139314	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	7093241	158139314	22775946	126	72727										
ODZ2	0	genome.wustl.edu	37	chr5	167671524	167671524	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcaccctgaggatcatttatGaccaggtgggccgccccttc	10	14	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	167671524	167671524	G	A	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.5620	p.D1874N	1.000	superfamily_ConA-like_lec_gl	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	40	0	0	22	8	26.67	-	-	-	A	167671524	G	A	167671524	3	1	895	1	0	0	0	0	1	0	0	0	10908	1290	45	2	5695	2	ODZ2	5	167671524	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	9532210	167671524	13243736	127	72728										
PANK3	0	genome.wustl.edu	37	chr5	167984582	167984582	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agagacctgatgctttagctGaaatttggcagcccaagaag	11	8	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	167984582	167984582	G	A	SNP	PANK3	ENST00000239231	human	ensembl	69_37n	-1	known	silent	c.1107	p.F369	1.000	NULL	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK3	HGNC	ENSG00000120137	98	0	0	67	22	24.72	-	-	-	A	167984582	G	A	167984582	2	1	895	1	0	0	0	0	0	0	0	1	11491	1281	45	2		2	PANK3	5	167984582	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	313058	167984582	12930678	128	72729										
MGAT4B	0	genome.wustl.edu	37	chr5	179225428	179225428	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cagggcctccttgtctgactGagggttctgggggcagaatc	15	10	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	179225428	179225428	G	A	SNP	MGAT4B	ENST00000337755	human	ensembl	69_37n	-1	known	nonsense	c.1474	p.Q492*	1.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013	18	0	0	8	8	50	-	-	-	A	179225428	G	A	179225428	4	1	895	1	0	0	0	0	0	1	0	0	9617	1299	45	2	229	2	MGAT4B	5	179225428	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	11240846	179225428	1689832	129	72730										
BTNL9	0	genome.wustl.edu	37	chr5	180477193	180477193	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caagcctaaggttcagtggaGagaccaccagggacagtgcc	13	11	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	5	180477193	180477193	G	C	SNP	BTNL9	ENST00000376842	human	ensembl	69_37n	1	known	missense	c.560	p.R187T	0.020	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL9	HGNC	ENSG00000165810	36	0	0	30	13	30.23	-	-	-	C	180477193	G	C	180477193	3	2	895	1	0	0	0	0	1	0	0	0	1577	942	33	2	570	2	BTNL9	5	180477193	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1251765	180477193	438067	130	72731										
LY86	0	genome.wustl.edu	37	chr6	6654780	6654780	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctgtgccccttgcagggaGaataccaggttttgctggaa	12	10	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	6654780	6654780	G	A	SNP	LY86	ENST00000230568	human	ensembl	69_37n	1	known	missense	c.409	p.E137K	1.000	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	pfam_MD-2_lipid-recog,superfamily_Ig_E-set,smart_MD-2_lipid-recog	-	no_errors	LY86	HGNC	ENSG00000112799	68	0	0	46	39	45.88	-	-	-	A	6654780	G	A	6654780	3	1	895	1	0	0	0	0	1	0	0	0	9167	943	33	2	427	2	LY86	6	6654780	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		6654780	164460287	131	72732										
CCDC90A	0	genome.wustl.edu	37	chr6	13801535	13801535	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttacctcattttctgctctGagggctgaaaattcactctt	6	10	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	13801535	13801535	G	A	SNP	CCDC90A	ENST00000379170	human	ensembl	69_37n	-1	known	silent	c.726	p.L242	0.998	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90A	HGNC	ENSG00000050393	95	0	0	80	28	25.93	-	-	-	A	13801535	G	A	13801535	2	1	895	1	0	0	0	0	0	0	0	1	2895	1277	45	2		2	CCDC90A	6	13801535	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	7146755	13801535	157313532	132	72733										
RBM24	0	genome.wustl.edu	37	chr6	17292010	17292010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctgcccactatgtctatcCgcaggcttttgtgcagccgg	10	14	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	17292010	17292010	C	T	SNP	RBM24	ENST00000379052	human	ensembl	69_37n	1	known	missense	c.371	p.P124L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM24	HGNC	ENSG00000112183	36	0	0	19	14	42.42	-	-	-	T	17292010	C	T	17292010	3	4	895	1	0	0	0	0	1	0	0	0	13207	652	23	1	418	1	RBM24	6	17292010	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3490475	17292010	153823057	133	72734										
HIST1H2BB	0	genome.wustl.edu	37	chr6	26043570	26043570	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cacagcatgcttagccagctCcccaggcagcagcaggcgca	11	16	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	26043570	26043570	C	A	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	nonsense	c.316	p.E106*	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	61	0	0	55	30	35.29	-	-	-	A	26043570	C	A	26043570	4	1	895	1	0	0	0	0	0	1	0	0	7192	864	30	2	68	2	HIST1H2BB	6	26043570	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	8751560	26043570	145071497	134	72735										
BTN3A2	0	genome.wustl.edu	37	chr6	26368441	26368441	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caagttccctggctttccttCtgctcaactttcatgtctcc	5	15	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	26368441	26368441	C	T	SNP	BTN3A2	ENST00000356386	human	ensembl	69_37n	1	known	silent	c.31	p.L11	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A2	HGNC	ENSG00000186470	284	0	0	324	139	30.02	-	-	-	T	26368441	C	T	26368441	2	4	895	1	0	0	0	0	0	0	0	1	1572	912	32	2		2	BTN3A2	6	26368441	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	324871	26368441	144746626	135	72736										
GABBR1	0	genome.wustl.edu	37	chr6	29589569	29589569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cttcagtctcatagaaaagtCccacgatgattcgggcatcc	8	12	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	29589569	29589569	C	T	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	missense	c.1091	p.G364E	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	44	0	0	19	8	29.63	-	-	-	T	29589569	C	T	29589569	3	4	895	1	0	0	0	0	1	0	0	0	6204	855	30	2	1850	2	GABBR1	6	29589569	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3221128	29589569	141525498	136	72737										
SLC44A4	0	genome.wustl.edu	37	chr6	31833105	31833105	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcctaacctgacaatgtttcGcatgagtagcatgaacgcat	9	10	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	31833105	31833105	G	C	SNP	SLC44A4	ENST00000229729	human	ensembl	69_37n	-1	known	missense	c.1747	p.R583G	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385	45	0	0	23	11	32.35	-	-	-	C	31833105	G	C	31833105	3	2	895	1	0	0	0	0	1	0	0	0	14727	1095	38	3	405	3	SLC44A4	6	31833105	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2243536	31833105	139281962	137	72738										
TEAD3	0	genome.wustl.edu	37	chr6	35446093	35446093	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgtcccaggagaggggggctGctccagaactgcagggatga	17	9	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	35446093	35446093	G	A	SNP	TEAD3	ENST00000402886	human	ensembl	69_37n	-1	novel	silent	c.309	p.S103	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866	33	0	0	8	7	46.67	-	-	-	A	35446093	G	A	35446093	2	1	895	1	0	0	0	0	0	0	0	1	15835	1310	46	4		4	TEAD3	6	35446093	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3612988	35446093	135668974	138	72739										
TEAD3	0	genome.wustl.edu	37	chr6	35446243	35446243	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggagaagacggcctggggcaGaggggaaggtgggctgaact	21	6	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	35446243	35446243	G	A	SNP	TEAD3	ENST00000402886	human	ensembl	69_37n	-1	novel	silent	c.268	p.L90	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866	66	0	0	16	17	51.52	-	-	-	A	35446243	G	A	35446243	2	1	895	1	0	0	0	0	0	0	0	1	15835	933	33	2		2	TEAD3	6	35446243	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	150	35446243	135668824	139	72740										
FGD2	0	genome.wustl.edu	37	chr6	36995215	36995215	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggttttagaaagggtcctCagccacgcctgaccagagcc	11	13	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	36995215	36995215	C	T	SNP	FGD2	ENST00000274963	human	ensembl	69_37n	1	known	missense	c.1616	p.S539L	0.000	NULL	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192	24	0	0	20	9	31.03	-	-	-	T	36995215	C	T	36995215	3	4	895	1	0	0	0	0	1	0	0	0	5879	838	29	2	1674	2	FGD2	6	36995215	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1548972	36995215	134119852	140	72741										
MEP1A	0	genome.wustl.edu	37	chr6	46766377	46766377	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctctttcaaggggacatcctCttgcaggtgagtacctgtca	10	11	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	46766377	46766377	C	G	SNP	MEP1A	ENST00000230588	human	ensembl	69_37n	1	known	silent	c.180	p.L60	0.325	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	79	0	0	29	11	27.5	-	-	-	G	46766377	C	G	46766377	2	3	895	1	0	0	0	0	0	0	0	1	9546	900	32	2		2	MEP1A	6	46766377	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9771162	46766377	124348690	141	72742										
GPR116	0	genome.wustl.edu	37	chr6	46828604	46828604	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caggtatgtagggagcatctCatcctgagaggggctcttga	14	8	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	46828604	46828604	C	T	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.2227	p.E743K	0.239	NULL	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	95	0	0	42	23	35.38	-	-	-	T	46828604	C	T	46828604	3	4	895	1	0	0	0	0	1	0	0	0	6683	835	29	2	1837	2	GPR116	6	46828604	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	62227	46828604	124286463	142	72743										
MUT	0	genome.wustl.edu	37	chr6	49399509	49399509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cacctgaacggcagcctttgGaattcgagtcccaggaccaa	10	13	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	49399509	49399509	G	A	SNP	MUT	ENST00000274813	human	ensembl	69_37n	-1	known	missense	c.2185	p.P729S	1.000	superfamily_Cobalamin-bd,tigrfam_Acid_CoA_mut_C	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085	83	0	0	40	15	27.27	-	-	-	A	49399509	G	A	49399509	3	1	895	1	0	0	0	0	1	0	0	0	10063	1174	41	2	71	2	MUT	6	49399509	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2570905	49399509	121715558	143	72744										
LMBRD1	0	genome.wustl.edu	37	chr6	70462186	70462186	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atcatcatcatccttttcttCataatagaagtagacaaaag	4	8	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	70462186	70462186	C	T	SNP	LMBRD1	ENST00000370577	human	ensembl	69_37n	-1	known	missense	c.370	p.E124K	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216	83	0	0	18	15	45.45	-	-	-	T	70462186	C	T	70462186	3	4	895	1	0	0	0	0	1	0	0	0	8898	835	29	2	1304	2	LMBRD1	6	70462186	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	21062677	70462186	100652881	144	72745										
AIM1	0	genome.wustl.edu	37	chr6	106967799	106967799	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcactgatctaaaagtgtcaGaaaaccataaaggatgtgtt	9	6	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	106967799	106967799	G	C	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.1492	p.E498Q	0.556	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	26	0	0	6	4	40	-	-	-	C	106967799	G	C	106967799	3	2	895	1	0	0	0	0	1	0	0	0	430	943	33	2	1498	2	AIM1	6	106967799	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	36505613	106967799	64147268	145	72746										
WASF1	0	genome.wustl.edu	37	chr6	110424677	110424677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctaataccctttcctcagctCtagtcagaagctcactcatc	4	15	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	110424677	110424677	C	G	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.797	p.R266T	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	112	0	0	37	24	39.34	-	-	-	G	110424677	C	G	110424677	3	3	895	1	0	0	0	0	1	0	0	0	17349	913	32	2	894	2	WASF1	6	110424677	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3456878	110424677	60690390	146	72747										
WASF1	0	genome.wustl.edu	37	chr6	110434547	110434547	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acattcttcttcctttggatCaagctgtgtaacactaacag	6	10	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	110434547	110434547	C	T	SNP	WASF1	ENST00000359451	human	ensembl	69_37n	-1	known	missense	c.250	p.D84N	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290	92	0	0	39	29	42.65	-	-	-	T	110434547	C	T	110434547	3	4	895	1	0	0	0	0	1	0	0	0	17349	826	29	2	1457	2	WASF1	6	110434547	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9870	110434547	60680520	147	72748										
ZBTB2	0	genome.wustl.edu	37	chr6	151694745	151694745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agcgtttaactgttgcagtaGaataagtccatggttggcca	11	7	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	6	151694745	151694745	G	C	SNP	ZBTB2	ENST00000325144	human	ensembl	69_37n	-1	known	missense	c.28	p.L10V	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472	114	0	0	38	39	50.65	-	-	-	C	151694745	G	C	151694745	3	2	895	1	0	0	0	0	1	0	0	0	17624	933	33	2	1524	2	ZBTB2	6	151694745	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	41260198	151694745	19420322	148	72749										
FTSJ2	0	genome.wustl.edu	37	chr7	2274964	2274964	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aggatgtctggggtcacgctGagaagggtcaggcacaggct	17	8	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	2274964	2274964	G	T	SNP	FTSJ2	ENST00000242257	human	ensembl	69_37n	-1	known	silent	c.534	p.L178	0.999	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	-	no_errors	FTSJ2	HGNC	ENSG00000122687	88	0	0	48	23	32.39	-	-	-	T	2274964	G	T	2274964	2	4	895	1	0	0	0	0	0	0	0	1	6137	1277	45	2		2	FTSJ2	7	2274964	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		2274964	156863699	149	72750										
DNAH11	0	genome.wustl.edu	37	chr7	21784183	21784183	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agattgtgatttgtttcagaGaagaatgctggaaactgctt	11	4	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	21784183	21784183	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.8303	p.R2768K	0.989	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	92	0	0	45	38	45.78	-	-	-	A	21784183	G	A	21784183	3	1	895	1	0	0	0	0	1	0	0	0	4635	942	33	2	8502	2	DNAH11	7	21784183	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	19509219	21784183	137354480	150	72751										
KLHL7	0	genome.wustl.edu	37	chr7	23180527	23180527	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagcgagtaacacatcttctCaaccaggacactctgactgt	7	12	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	23180527	23180527	C	A	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	silent	c.582	p.L194	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	81	0	0	38	17	30.91	-	-	-	A	23180527	C	A	23180527	2	1	895	1	0	0	0	0	0	0	0	1	8447	813	29	2		2	KLHL7	7	23180527	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1396344	23180527	135958136	151	72752										
OGDH	0	genome.wustl.edu	37	chr7	44734059	44734059	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acggccacaacgagatggatGagcccatgttcacgcagccg	12	13	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	44734059	44734059	G	A	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	1	known	missense	c.1552	p.E518K	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	55	0	0	45	22	32.84	-	-	-	A	44734059	G	A	44734059	3	1	895	1	0	0	0	0	1	0	0	0	10912	1291	45	2	1767	2	OGDH	7	44734059	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	21553532	44734059	114404604	152	72753										
CLIP2	0	genome.wustl.edu	37	chr7	73771716	73771716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgagcagctgctggctgaacGagacctggaacgggctgagg	17	9	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	73771716	73771716	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.1124	p.R375Q	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	10	0	0	3	4	57.14	-	-	-	A	73771716	G	A	73771716	3	1	895	1	0	0	0	0	1	0	0	0	3563	1058	37	1	1142	1	CLIP2	7	73771716	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	29037657	73771716	85366947	153	72754										
MAGI2	0	genome.wustl.edu	37	chr7	79082424	79082424	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtgagccccgccacgggggtCtcgttcacctccagcagcag	13	16	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	79082424	79082424	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	silent	c.213	p.E71	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	16	0	0	8	9	52.94	-	-	-	T	79082424	C	T	79082424	2	4	895	1	0	0	0	0	0	0	0	1	9262	912	32	2		2	MAGI2	7	79082424	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5310708	79082424	80056239	154	72755										
PCLO	0	genome.wustl.edu	37	chr7	82467571	82467571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtacactttcacaaaagggtCagaataaccattgttgtctc	7	9	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	82467571	82467571	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.14185	p.D4729N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	91	0	0	65	17	20.73	-	-	-	T	82467571	C	T	82467571	3	4	895	1	0	0	0	0	1	0	0	0	11656	826	29	2	1304	2	PCLO	7	82467571	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3385147	82467571	76671092	155	72756										
SEMA3A	0	genome.wustl.edu	37	chr7	83675694	83675694	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gattgggtggtggtgcccaaGagttcggaagatagcaaagt	16	5	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	83675694	83675694	G	A	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.613	p.L205F	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	136	0	0	94	36	27.48	-	-	-	A	83675694	G	A	83675694	3	1	895	1	0	0	0	0	1	0	0	0	14112	942	33	2	1750	2	SEMA3A	7	83675694	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1208123	83675694	75462969	156	72757										
ZNF804B	0	genome.wustl.edu	37	chr7	88965217	88965217	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcaccatcaggctgtaacaGacaagcattgcctttgtctg	9	11	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	88965217	88965217	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	missense	c.2921	p.R974K	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	49	0	0	29	7	19.44	-	-	-	A	88965217	G	A	88965217	3	1	895	1	0	0	0	0	1	0	0	0	18264	942	33	2	2935	2	ZNF804B	7	88965217	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5289523	88965217	70173446	157	72758										
SAMD9L	0	genome.wustl.edu	37	chr7	92764738	92764738	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgctcctgtttcaggttgtaGagtataatgttctatgtagc	10	6	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	92764738	92764738	G	C	SNP	SAMD9L	ENST00000318238	human	ensembl	69_37n	-1	known	missense	c.547	p.L183V	0.291	NULL	superfamily_SAM/pointed,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	179	0	0	138	67	32.68	-	-	-	C	92764738	G	C	92764738	3	2	895	1	0	0	0	0	1	0	0	0	13913	933	33	2	4211	2	SAMD9L	7	92764738	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3799521	92764738	66373925	158	72759										
CCDC132	0	genome.wustl.edu	37	chr7	92979256	92979256	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggtaaagcccttgattatGaacagatgctgcttctcatg	9	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	92979256	92979256	G	T	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	nonsense	c.2374	p.E792*	1.000	pfam_DUF2451_C	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	104	0	0	52	20	27.78	-	-	-	T	92979256	G	T	92979256	4	4	895	1	0	0	0	0	0	1	0	0	2792	1291	45	2	2514	2	CCDC132	7	92979256	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	214518	92979256	66159407	159	72760										
SPDYE3	0	genome.wustl.edu	37	chr7	99905564	99905564	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagcccccagcggagcacctCagggtaccccctccaggagg	13	17	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	99905564	99905564	C	G	SNP	SPDYE3	ENST00000332397	human	ensembl	69_37n	1	known	nonsense	c.56	p.S19*	0.007	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300	122	0	0	50	21	29.58	-	-	-	G	99905564	C	G	99905564	4	3	895	1	0	0	0	0	0	1	0	0	15123	838	29	2	58	2	SPDYE3	7	99905564	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6926308	99905564	59233099	160	72761										
LRRN3	0	genome.wustl.edu	37	chr7	110763804	110763804	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accctagattgtcttacattCaccccaatgcatttttcaga	4	12	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	110763804	110763804	C	G	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	missense	c.976	p.H326D	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	73	0	0	57	20	25.97	-	-	-	G	110763804	C	G	110763804	3	3	895	1	0	0	0	0	1	0	0	0	9102	826	29	2	978	2	LRRN3	7	110763804	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10858240	110763804	48374859	161	72762										
MET	0	genome.wustl.edu	37	chr7	116371761	116371761	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caggctgtgaagcgcgccgtGatgaatatcgaacagagttt	13	8	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	116371761	116371761	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	1	known	missense	c.1240	p.D414N	0.998	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	89	0	0	60	24	28.57	-	-	-	A	116371761	G	A	116371761	3	1	895	1	0	0	0	0	1	0	0	0	9556	1290	45	2	1246	2	MET	7	116371761	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5607957	116371761	42766902	162	72763										
CFTR	0	genome.wustl.edu	37	chr7	117227866	117227866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cacactgagtggaggtcaacGagcaagaatttctttagcaa	10	8	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	117227866	117227866	G	C	SNP	CFTR	ENST00000003084	human	ensembl	69_37n	1	known	missense	c.1658	p.R553P	1.000	pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	98	0	0	50	24	32.43	-	-	-	C	117227866	G	C	117227866	3	2	895	1	0	0	0	0	1	0	0	0	3323	1058	37	3	1704	3	CFTR	7	117227866	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	856105	117227866	41910797	163	72764										
CFTR	0	genome.wustl.edu	37	chr7	117251828	117251828	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgatttttgtcatcttcttCattgctgttaccttcatttc	4	9	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	117251828	117251828	C	G	SNP	CFTR	ENST00000468795	human	ensembl	69_37n	1	putative	nonsense	c.158	p.S53*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,prints_CysFib_conduc_TM,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,prints_CysFib_conduc_TM,pfscan_ABC_transporter_type1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CFTR	HGNC	ENSG00000001626	88	0	0	60	25	29.41	-	-	-	G	117251828	C	G	117251828	4	3	895	1	0	0	0	0	0	1	0	0	3323	825	29	2	3411	2	CFTR	7	117251828	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	23962	117251828	41886835	164	72765										
RNF133	0	genome.wustl.edu	37	chr7	122338358	122338358	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctatgaatgtgataaaagatGaaatatgctaaggtagcagt	10	3	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	122338358	122338358	G	A	SNP	RNF133	ENST00000340112	human	ensembl	69_37n	-1	known	silent	c.615	p.F205	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF133	HGNC	ENSG00000188050	104	0	0	71	23	24.47	-	-	-	A	122338358	G	A	122338358	2	1	895	1	0	0	0	0	0	0	0	1	13525	1281	45	2		2	RNF133	7	122338358	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5086530	122338358	36800305	165	72766										
LRRC4	0	genome.wustl.edu	37	chr7	127670274	127670274	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacaggtattcaaaggccccGctagggatgactgtcagcca	12	11	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	127670274	127670274	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	69_37n	-1	known	silent	c.420	p.S140	0.995	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4	HGNC	ENSG00000128594	70	0	0	49	8	14.04	-	-	-	A	127670274	G	A	127670274	2	1	895	1	0	0	0	0	0	0	0	1	9063	1078	38	1		1	LRRC4	7	127670274	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5331916	127670274	31468389	166	72767										
CNTNAP2	0	genome.wustl.edu	37	chr7	148080896	148080896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acatccagggcgagctggtgGagtccaactgcggggcctcg	16	12	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	148080896	148080896	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	1	known	missense	c.3631	p.E1211K	1.000	pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	33	0	0	14	6	30	-	-	-	A	148080896	G	A	148080896	3	1	895	1	0	0	0	0	1	0	0	0	3677	1175	41	2	3717	2	CNTNAP2	7	148080896	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	20410622	148080896	11057767	167	72768										
GIMAP7	0	genome.wustl.edu	37	chr7	150217320	150217320	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaaatcagccgctgcatcatCtcctcctgcccagggcccca	8	18	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	150217320	150217320	C	T	SNP	GIMAP7	ENST00000313543	human	ensembl	69_37n	1	known	silent	c.258	p.I86	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP7	HGNC	ENSG00000179144	55	0	0	34	12	26.09	-	-	-	T	150217320	C	T	150217320	2	4	895	1	0	0	0	0	0	0	0	1	6436	903	32	2		2	GIMAP7	7	150217320	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2136424	150217320	8921343	168	72769										
MLL3	0	genome.wustl.edu	37	chr7	152027786	152027786	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgtttgctgttatccacttCtgcttcagcatcctcttctg	6	13	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	7	152027786	152027786	C	G	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.289	p.E97Q	0.966	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	169	0	0	128	69	35.03	-	-	-	G	152027786	C	G	152027786	3	3	895	1	0	0	0	0	1	0	0	0	9693	922	32	2	14674	2	MLL3	7	152027786	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1810466	152027786	7110877	169	72770										
CLU	0	genome.wustl.edu	37	chr8	27457503	27457503	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctcccgccgcagcttagcctGggaggggttgttggtggaac	16	11	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	27457503	27457503	G	A	SNP	CLU	ENST00000560366	human	ensembl	69_37n	-1	known	nonsense	c.1114	p.Q372*	0.981	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLU	HGNC	ENSG00000120885	70	0	0	45	27	37.5	-	-	-	A	27457503	G	A	27457503	4	1	895	1	0	0	0	0	0	1	0	0	3598	1357	47	4	403	4	CLU	8	27457503	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		27457503	118906519	170	72771										
UNC5D	0	genome.wustl.edu	37	chr8	35606082	35606082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgaggtgctcctgagtcctGaagtcacctgtggtcctcca	11	13	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	35606082	35606082	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	1	known	missense	c.1804	p.E602K	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	65	0	0	51	17	25	-	-	-	A	35606082	G	A	35606082	3	1	895	1	0	0	0	0	1	0	0	0	17092	1291	45	2	1850	2	UNC5D	8	35606082	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8148579	35606082	110757940	171	72772										
CHRNA6	0	genome.wustl.edu	37	chr8	42620327	42620327	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttgtggaagagcctctcctCagttgcacagcccacacagc	9	14	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	42620327	42620327	C	T	SNP	CHRNA6	ENST00000276410	human	ensembl	69_37n	-1	known	missense	c.100	p.E34K	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	47	0	0	36	15	29.41	-	-	-	T	42620327	C	T	42620327	3	4	895	1	0	0	0	0	1	0	0	0	3416	835	29	2	1404	2	CHRNA6	8	42620327	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	7014245	42620327	103743695	172	72773										
PRKDC	0	genome.wustl.edu	37	chr8	48811083	48811083	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaaacatgcttcttttcaatGatgcggcataggtgatcaat	9	7	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	48811083	48811083	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	silent	c.3411	p.I1137	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	84	0	0	75	36	32.43	-	-	-	A	48811083	G	A	48811083	2	1	895	1	0	0	0	0	0	0	0	1	12602	1280	45	2		2	PRKDC	8	48811083	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6190756	48811083	97552939	173	72774										
MOS	0	genome.wustl.edu	37	chr8	57026109	57026109	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatgacttggtgtaaagtgaCgttgccaccgaactccatga	11	9	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	57026109	57026109	C	G	SNP	MOS	ENST00000311923	human	ensembl	69_37n	-1	known	missense	c.433	p.V145L	0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MOS	HGNC	ENSG00000172680	25	0	0	15	10	40	-	-	-	G	57026109	C	G	57026109	3	3	895	1	0	0	0	0	1	0	0	0	9784	536	19	3	610	3	MOS	8	57026109	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	8215026	57026109	89337913	174	72775										
PENK	0	genome.wustl.edu	37	chr8	57354326	57354326	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagcctccataccttttcatGaagcccccataccttttggc	5	15	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	57354326	57354326	G	A	SNP	PENK	ENST00000314922	human	ensembl	69_37n	-1	known	silent	c.309	p.F103	1.000	prints_Opioid_neupept	pfam_Opioid_neupept,prints_Proenkphlin_A,prints_Opioid_neupept	-	no_errors	PENK	HGNC	ENSG00000181195	84	0	0	54	23	29.87	-	-	-	A	57354326	G	A	57354326	2	1	895	1	0	0	0	0	0	0	0	1	11800	1281	45	2		2	PENK	8	57354326	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	328217	57354326	89009696	175	72776										
CYP7B1	0	genome.wustl.edu	37	chr8	65527649	65527649	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaatccagaccctttcttttGacctgttgactgcagcaaac	6	12	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	65527649	65527649	G	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	85	0	0	79	29	26.85	-	-	-	A	65527649	G	A	65527649	4	1	895	1	0	0	0	0	0	1	0	0	4228	1299	45	2	541	2	CYP7B1	8	65527649	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8173323	65527649	80836373	176	72777										
PREX2	0	genome.wustl.edu	37	chr8	69020348	69020348	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttctttaatttgcagttttCtcgtgtactgaagaataggg	9	5	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	69020348	69020348	C	G	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.2720	p.S907C	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	157	0	0	104	35	25.18	-	-	-	G	69020348	C	G	69020348	3	3	895	1	0	0	0	0	1	0	0	0	12558	913	32	2	3043	2	PREX2	8	69020348	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3492699	69020348	77343674	177	72778										
FBXO32	0	genome.wustl.edu	37	chr8	124544170	124544170	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gttaaatcttctggaatccaGaatggcagttgagaagtcca	10	7	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	124544170	124544170	G	C	SNP	FBXO32	ENST00000517956	human	ensembl	69_37n	-1	known	missense	c.340	p.L114V	1.000	NULL	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO32	HGNC	ENSG00000156804	72	0	0	69	20	22.47	-	-	-	C	124544170	G	C	124544170	3	2	895	1	0	0	0	0	1	0	0	0	5788	933	33	2	751	2	FBXO32	8	124544170	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	55523822	124544170	21819852	178	72779										
GRINA	0	genome.wustl.edu	37	chr8	145066883	145066883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctcgcagtggacacccagctGctactggggaacaagcagct	12	13	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	145066883	145066883	G	A	SNP	GRINA	ENST00000534791	human	ensembl	69_37n	1	putative	missense	c.926	p.C309Y	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	GRINA	HGNC	ENSG00000178719	59	0	0	42	14	25	-	-	-	A	145066883	G	A	145066883	3	1	895	1	0	0	0	0	1	0	0	0	6836	1306	46	4	1012	4	GRINA	8	145066883	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	20522713	145066883	1297139	179	72780										
CPSF1	0	genome.wustl.edu	37	chr8	145621563	145621563	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gggaaccggccggaccccacCtgtctgttgaagtacaggaa	13	12	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	145621563	145621563	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	silent	c.2979	p.Q993	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	10	0	0	9	5	35.71	-	-	-	T	145621563	C	T	145621563	2	4	895	1	0	0	0	0	0	0	0	1	3854	695	24	4		4	CPSF1	8	145621563	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	554680	145621563	742459	180	72781										
GPT	0	genome.wustl.edu	37	chr8	145730399	145730399	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aggggcctacagcgtcagctCcggcatccagctgatccggg	14	14	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	145730399	145730399	C	G	SNP	GPT	ENST00000394955	human	ensembl	69_37n	1	known	missense	c.380	p.S127C	0.998	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	GPT	HGNC	ENSG00000167701	37	0	0	23	8	25.81	-	-	-	G	145730399	C	G	145730399	3	3	895	1	0	0	0	0	1	0	0	0	6788	855	30	2	394	2	GPT	8	145730399	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	108836	145730399	633623	181	72782										
ZNF34	0	genome.wustl.edu	37	chr8	145999258	145999258	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacatttatagggtttctctCcggtgtggattctctggtga	11	7	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	8	145999258	145999258	C	G	SNP	ZNF34	ENST00000343459	human	ensembl	69_37n	-1	known	missense	c.1076	p.G359A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378	66	0	0	51	21	29.17	-	-	-	G	145999258	C	G	145999258	3	3	895	1	0	0	0	0	1	0	0	0	17952	855	30	2	610	2	ZNF34	8	145999258	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	268859	145999258	364764	182	72783										
GDA	0	genome.wustl.edu	37	chr9	74817626	74817626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aacacagattccagaacatcGactttgcagaagaagtatat	7	8	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	74817626	74817626	G	A	SNP	GDA	ENST00000238018	human	ensembl	69_37n	1	known	missense	c.352	p.D118N	0.924	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125	109	0	0	57	34	37.36	-	-	-	A	74817626	G	A	74817626	3	1	895	1	0	0	0	0	1	0	0	0	6357	1058	37	1	362	1	GDA	9	74817626	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		74817626	66395805	183	72784										
TRPM6	0	genome.wustl.edu	37	chr9	77377646	77377646	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cttgcctttcctggtcatttCttacatttgtagcctctctt	5	12	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	77377646	77377646	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.3941	p.R1314K	0.004	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	116	0	0	91	35	27.78	-	-	-	T	77377646	C	T	77377646	3	4	895	1	0	0	0	0	1	0	0	0	16686	913	32	2	2183	2	TRPM6	9	77377646	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2560020	77377646	63835785	184	72785										
NFIL3	0	genome.wustl.edu	37	chr9	94172741	94172741	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aggtcattcagtcgacgcttCtcacgagatcttttggcagc	10	11	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	94172741	94172741	C	G	SNP	NFIL3	ENST00000297689	human	ensembl	69_37n	-1	known	missense	c.276	p.E92D	1.000	pfam_bZIP_2,pfam_bZIP_1,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	pfam_Vert_IL3-reg_TF,pfam_bZIP_2,pfam_bZIP_1,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	-	no_errors	NFIL3	HGNC	ENSG00000165030	130	0	0	75	43	36.44	-	-	-	G	94172741	C	G	94172741	3	3	895	1	0	0	0	0	1	0	0	0	10445	912	32	2	1116	2	NFIL3	9	94172741	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	16795095	94172741	47040690	185	72786										
FAM120A	0	genome.wustl.edu	37	chr9	96238576	96238576	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgaagatctggcttcctttCactggagtttacttggtcca	9	9	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	96238576	96238576	C	T	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	missense	c.760	p.H254Y	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	169	0	0	130	63	32.47	-	-	-	T	96238576	C	T	96238576	3	4	895	1	0	0	0	0	1	0	0	0	5455	826	29	2	770	2	FAM120A	9	96238576	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2065835	96238576	44974855	186	72787										
FAM120A	0	genome.wustl.edu	37	chr9	96261150	96261150	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctagtaagcctatgtcatttCatccaccacattacttaggt	5	11	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	96261150	96261150	C	T	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	missense	c.1012	p.H338Y	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	110	1	0.9	64	30	31.91	-	-	-	T	96261150	C	T	96261150	3	4	895	1	0	0	0	0	1	0	0	0	5455	826	29	2	1030	2	FAM120A	9	96261150	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	22574	96261150	44952281	187	72788										
FAM22F	0	genome.wustl.edu	37	chr9	97080967	97080967	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaggtgatgggctgaggcctCttttctgagcagatggagac	15	7	2	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	97080967	97080967	C	G	SNP	FAM22F	ENST00000253262	human	ensembl	69_37n	-1	known	missense	c.2051	p.R684T	0.001	NULL	NULL	-	no_errors	FAM22F	HGNC	ENSG00000130950	116	0	0	103	15	12.71	-	-	-	G	97080967	C	G	97080967	3	3	895	1	0	0	0	0	1	0	0	0	5587	913	32	2	223	2	FAM22F	9	97080967	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	819817	97080967	44132464	188	72789										
ABCA1	0	genome.wustl.edu	37	chr9	107562237	107562237	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgacattcaggaaagagctGattgcatgccagcccttgtt	10	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	107562237	107562237	G	A	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	silent	c.4806	p.I1602	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	61	0	0	63	27	30	-	-	-	A	107562237	G	A	107562237	2	1	895	1	0	0	0	0	0	0	0	1	28	1280	45	2		2	ABCA1	9	107562237	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10481270	107562237	33651194	189	72790										
ZNF462	0	genome.wustl.edu	37	chr9	109689443	109689443	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccctttctcaattatcatttGaggtgggtgctccaatgtct	8	10	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	109689443	109689443	G	C	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	missense	c.3250	p.E1084Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	53	0	0	42	13	23.64	-	-	-	C	109689443	G	C	109689443	3	2	895	1	0	0	0	0	1	0	0	0	18022	1291	45	2	3256	2	ZNF462	9	109689443	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2127206	109689443	31523988	190	72791										
PAPPA	0	genome.wustl.edu	37	chr9	118950076	118950076	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttccgccagcccaaggtggtGcgctaccgcgtggtcaacct	12	15	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	118950076	118950076	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	silent	c.1059	p.V353	0.916	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	26	0	0	22	8	26.67	-	-	-	A	118950076	G	A	118950076	2	1	895	1	0	0	0	0	0	0	0	1	11505	1306	46	4		4	PAPPA	9	118950076	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	9260633	118950076	22263355	191	72792										
ASTN2	0	genome.wustl.edu	37	chr9	119625984	119625984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cagcaggtcattgatggtttCaaagtatgtggacagcatcg	12	7	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	119625984	119625984	C	G	SNP	ASTN2	ENST00000313400	human	ensembl	69_37n	-1	known	missense	c.1918	p.E640Q	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	66	0	0	44	22	33.33	-	-	-	G	119625984	C	G	119625984	3	3	895	1	0	0	0	0	1	0	0	0	1069	835	29	2	2385	2	ASTN2	9	119625984	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	675908	119625984	21587447	192	72793										
TLR4	0	genome.wustl.edu	37	chr9	120476354	120476354	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tagtatctgttgtagcagttCtggtctataagttctatttt	8	5	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	120476354	120476354	C	A	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.1948	p.L650M	0.071	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	167	0	0	127	51	28.49	-	-	-	A	120476354	C	A	120476354	3	1	895	1	0	0	0	0	1	0	0	0	16048	912	32	2	1958	2	TLR4	9	120476354	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	850370	120476354	20737077	193	72794										
SETX	0	genome.wustl.edu	37	chr9	135205472	135205472	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcaatttccagatgatttctCagaactccgtgtaaacgcag	8	10	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	9	135205472	135205472	C	G	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.1513	p.E505Q	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	58	0	0	36	16	30.77	-	-	-	G	135205472	C	G	135205472	3	3	895	1	0	0	0	0	1	0	0	0	14229	835	29	2	6588	2	SETX	9	135205472	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	14729118	135205472	6007959	194	72795										
DIP2C	0	genome.wustl.edu	37	chr10	323392	323392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgtccaccacgaccaccactCcgacgatcaggtagtgctcc	8	17	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	323392	323392	C	G	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	missense	c.4544	p.G1515A	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	76	0	0	81	25	23.58	-	-	-	G	323392	C	G	323392	3	3	895	1	0	0	0	0	1	0	0	0	4565	855	30	2	130	2	DIP2C	10	323392	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		323392	135211355	195	72796										
ARMC3	0	genome.wustl.edu	37	chr10	23250863	23250863	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctaaatgcaatacctcctatCttagatctcttgaagtcaga	5	10	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	23250863	23250863	C	G	SNP	ARMC3	ENST00000298032	human	ensembl	69_37n	1	known	missense	c.588	p.I196M	0.011	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309	91	0	0	67	27	28.72	-	-	-	G	23250863	C	G	23250863	3	3	895	1	0	0	0	0	1	0	0	0	956	903	32	2	610	2	ARMC3	10	23250863	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	22927471	23250863	112283884	196	72797										
GJD4	0	genome.wustl.edu	37	chr10	35896648	35896648	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aatgtttgctacgacgtcttCtcccccgtgtctcacctgcg	8	15	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	35896648	35896648	C	G	SNP	GJD4	ENST00000321660	human	ensembl	69_37n	1	known	missense	c.207	p.F69L	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD4	HGNC	ENSG00000177291	33	0	0	47	21	30.88	-	-	-	G	35896648	C	G	35896648	3	3	895	1	0	0	0	0	1	0	0	0	6471	912	32	2	213	2	GJD4	10	35896648	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	12645785	35896648	99638099	197	72798										
ERCC6	0	genome.wustl.edu	37	chr10	50678569	50678569	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacctaacttttcatcaatgCtttcatcaccagatggcata	5	11	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	50678569	50678569	C	G	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.3437	p.S1146T	0.001	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	115	0	0	35	14	28.57	-	-	-	G	50678569	C	G	50678569	3	3	895	1	0	0	0	0	1	0	0	0	5254	797	28	4	1060	4	ERCC6	10	50678569	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	14781921	50678569	84856178	198	72799										
TSPAN15	0	genome.wustl.edu	37	chr10	71255361	71255361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttgaatagaccattgacttCctgaacgacaacattcgaag	7	9	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	71255361	71255361	C	A	SNP	TSPAN15	ENST00000373290	human	ensembl	69_37n	1	known	missense	c.369	p.F123L	0.985	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN15	HGNC	ENSG00000099282	131	0	0	88	49	35.77	-	-	-	A	71255361	C	A	71255361	3	1	895	1	0	0	0	0	1	0	0	0	16735	854	30	2	383	2	TSPAN15	10	71255361	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	20576792	71255361	64279386	199	72800										
KIAA0913	0	genome.wustl.edu	37	chr10	75559813	75559813	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gctcagtacccttattcagtGactcctccctcacttgctgc	6	16	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	75559813	75559813	G	A	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	1	known	silent	c.4710	p.V1570	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	90	0	0	67	33	33	-	-	-	A	75559813	G	A	75559813	2	1	895	1	0	0	0	0	0	0	0	1	8252	1277	45	2		2	KIAA0913	10	75559813	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4304452	75559813	59974934	200	72801										
SORBS1	0	genome.wustl.edu	37	chr10	97110968	97110968	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaggtgaccaaaacagacctCtgacccagatttcctttttg	8	11	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	97110968	97110968	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	69_37n	-1	known	missense	c.2380	p.E794K	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	95	0	0	74	31	29.52	-	-	-	T	97110968	C	T	97110968	3	4	895	1	0	0	0	0	1	0	0	0	15016	922	32	2	1598	2	SORBS1	10	97110968	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	21551155	97110968	38423779	201	72802										
OPALIN	0	genome.wustl.edu	37	chr10	98108050	98108050	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaccaagagttcttacctcaGatatcttgggattgtcatca	7	9	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	98108050	98108050	G	A	SNP	OPALIN	ENST00000371172	human	ensembl	69_37n	-1	known	missense	c.245	p.S82F	0.971	NULL	NULL	-	no_errors	OPALIN	HGNC	ENSG00000197430	80	0	0	56	25	30.86	-	-	-	A	98108050	G	A	98108050	3	1	895	1	0	0	0	0	1	0	0	0	10946	942	33	2	188	2	OPALIN	10	98108050	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	997082	98108050	37426697	202	72803										
SORCS1	0	genome.wustl.edu	37	chr10	108536409	108536409	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccccttcatctgagctgatCaataaactgctctcaatctc	5	14	5	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	108536409	108536409	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	69_37n	-1	known	silent	c.768	p.L256	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	130	0	0	80	37	31.62	-	-	-	T	108536409	C	T	108536409	2	4	895	1	0	0	0	0	0	0	0	1	15019	825	29	2		2	SORCS1	10	108536409	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10428359	108536409	26998338	203	72804										
PNLIPRP3	0	genome.wustl.edu	37	chr10	118196375	118196375	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacacaatcccaatgcctatCaggtaagctaacttgcagcc	6	13	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	118196375	118196375	C	T	SNP	PNLIPRP3	ENST00000369230	human	ensembl	69_37n	1	known	nonsense	c.202	p.Q68*	0.835	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837	90	0	0	71	20	21.98	-	-	-	T	118196375	C	T	118196375	4	4	895	1	0	0	0	0	0	1	0	0	12226	827	29	2	208	2	PNLIPRP3	10	118196375	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9659966	118196375	17338372	204	72805										
MKI67	0	genome.wustl.edu	37	chr10	129901071	129901071	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggtgctggcatgcagcgcagCctcttggttcccgtgacgct	14	13	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	129901071	129901071	C	T	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	silent	c.9033	p.R3011	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	57	0	0	51	39	43.33	-	-	-	T	129901071	C	T	129901071	2	4	895	1	0	0	0	0	0	0	0	1	9669	738	26	4		4	MKI67	10	129901071	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	11704696	129901071	5633676	205	72806										
TUBGCP2	0	genome.wustl.edu	37	chr10	135106636	135106636	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccctgcctgtgcagctgctCcagctgtgacaccagaatca	10	15	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	10	135106636	135106636	C	G	SNP	TUBGCP2	ENST00000543663	human	ensembl	69_37n	-1	known	missense	c.1015	p.E339Q	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	33	0	0	27	4	12.9	-	-	-	G	135106636	C	G	135106636	3	3	895	1	0	0	0	0	1	0	0	0	16863	864	30	2	1825	2	TUBGCP2	10	135106636	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5205565	135106636	428111	206	72807										
PKP3	0	genome.wustl.edu	37	chr11	403681	403681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctgaaccccctgctagacCgtgtcaggaccgccgaccac	9	17	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	403681	403681	C	T	SNP	PKP3	ENST00000331563	human	ensembl	69_37n	1	known	missense	c.1987	p.R663C	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363	27	0	0	22	18	45	-	-	-	T	403681	C	T	403681	3	4	895	1	0	0	0	0	1	0	0	0	12060	652	23	1	2025	1	PKP3	11	403681	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		403681	134602835	207	72808										
OR52K2	0	genome.wustl.edu	37	chr11	4471264	4471264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggcagttctactgcttgcctCtcaggaggcccgctacaagg	12	13	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	4471264	4471264	C	T	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	missense	c.695	p.S232F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	178	0	0	200	88	30.56	-	-	-	T	4471264	C	T	4471264	3	4	895	1	0	0	0	0	1	0	0	0	11197	913	32	2	697	2	OR52K2	11	4471264	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4067583	4471264	130535252	208	72809										
TRIM22	0	genome.wustl.edu	37	chr11	5718549	5718549	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagaagctggaagatgacatCagacaagagagaaccgcctg	13	8	1	6			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	5718549	5718549	C	T	SNP	TRIM22	ENST00000414897	human	ensembl	69_37n	1	known	nonsense	c.226	p.Q76*	0.000	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIM22	HGNC	ENSG00000132274	41	0	0	38	8	17.39	-	-	-	T	5718549	C	T	5718549	4	4	895	1	0	0	0	0	0	1	0	0	16592	816	29	2	501	2	TRIM22	11	5718549	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1247285	5718549	129287967	209	72810										
MICALCL	0	genome.wustl.edu	37	chr11	12315771	12315771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaggggagcgaaacgtgcctCcacccaagtccccactgcgg	12	15	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	12315771	12315771	C	T	SNP	MICALCL	ENST00000256186	human	ensembl	69_37n	1	known	missense	c.793	p.P265S	0.054	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	19	0	0	10	5	33.33	-	-	-	T	12315771	C	T	12315771	3	4	895	1	0	0	0	0	1	0	0	0	9643	855	30	2	799	2	MICALCL	11	12315771	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6597222	12315771	122690745	210	72811										
USH1C	0	genome.wustl.edu	37	chr11	17522697	17522697	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggccaggtctaaggatccctCctggttagaggaaaacaggc	13	10	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	17522697	17522697	C	G	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.2281	p.E761Q	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	32	0	0	27	9	25	-	-	-	G	17522697	C	G	17522697	3	3	895	1	0	0	0	0	1	0	0	0	17131	869	30	2	438	2	USH1C	11	17522697	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5206926	17522697	117483819	211	72812										
NR1H3	0	genome.wustl.edu	37	chr11	47289528	47289528	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccatgaatgagctgcaactCaatgatgccgagtttgcctt	10	10	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	47289528	47289528	C	T	SNP	NR1H3	ENST00000441012	human	ensembl	69_37n	1	known	silent	c.1053	p.L351	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	-	no_errors	NR1H3	HGNC	ENSG00000025434	103	0	0	72	36	33.33	-	-	-	T	47289528	C	T	47289528	2	4	895	1	0	0	0	0	0	0	0	1	10691	813	29	2		2	NR1H3	11	47289528	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	29766831	47289528	87716988	212	72813										
OR4C16	0	genome.wustl.edu	37	chr11	55340509	55340509	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgaggaagctttggagcaaGaaattgatcacagatgacaa	11	5	1	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	55340509	55340509	G	C	SNP	OR4C16	ENST00000314634	human	ensembl	69_37n	1	known	missense	c.906	p.K302N	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	42	0	0	36	15	29.41	-	-	-	C	55340509	G	C	55340509	3	2	895	1	0	0	0	0	1	0	0	0	11122	933	33	2	908	2	OR4C16	11	55340509	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	8050981	55340509	79666007	213	72814										
OR5I1	0	genome.wustl.edu	37	chr11	55703532	55703532	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	taggccatggcggccaggatGaaggattctgtatctgcaaa	13	8	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	55703532	55703532	G	A	SNP	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	silent	c.345	p.F115	0.031	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	37	0	0	20	11	35.48	-	-	-	A	55703532	G	A	55703532	2	1	895	1	0	0	0	0	0	0	0	1	11237	1281	45	2		2	OR5I1	11	55703532	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	363023	55703532	79302984	214	72815										
OR5F1	0	genome.wustl.edu	37	chr11	55761969	55761969	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatcctgattaagaggatcaTcccgagatttcccagtactg	9	10	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	55761969	55761969	T	C	SNP	OR5F1	ENST00000278409	human	ensembl	69_37n	-1	known	missense	c.133	p.M45V	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133	22	0	0	14	5	26.32	-	-	-	C	55761969	T	C	55761969	3	2	895	1	0	0	0	0	1	0	0	0	11231	1435	50	5	814	5	OR5F1	11	55761969	Missense_Mutation	SNP	T	TCGA-EW-A1J5-01A-11D-A13L-09	58437	55761969	79244547	215	72816										
OR5T2	0	genome.wustl.edu	37	chr11	56000014	56000014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agaggagggatatcacaaaaGacacgcctaatttcattggc	10	8	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	56000014	56000014	G	A	SNP	OR5T2	ENST00000313264	human	ensembl	69_37n	-1	known	silent	c.648	p.V216	0.179	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5T2	HGNC	ENSG00000181718	94	0	0	97	32	24.81	-	-	-	A	56000014	G	A	56000014	2	1	895	1	0	0	0	0	0	0	0	1	11255	929	33	2		2	OR5T2	11	56000014	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	238045	56000014	79006502	216	72817										
ZP1	0	genome.wustl.edu	37	chr11	60637194	60637194	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cctttccttcctccccacctCtggccatacctcccaaggct	4	21	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	60637194	60637194	C	G	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	missense	c.503	p.S168C	0.001	NULL	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	91	0	0	49	12	19.67	-	-	-	G	60637194	C	G	60637194	3	3	895	1	0	0	0	0	1	0	0	0	18308	913	32	2	513	2	ZP1	11	60637194	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4637180	60637194	74369322	217	72818										
COX8A	0	genome.wustl.edu	37	chr11	63742177	63742177	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccgtcctgacgccgctgctgCtgcggggcttgacaggctcg	15	15	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	63742177	63742177	C	T	SNP	COX8A	ENST00000314133	human	ensembl	69_37n	1	known	silent	c.25	p.L9	1.000	NULL	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	-	no_errors	COX8A	HGNC	ENSG00000176340	21	0	0	5	9	64.29	-	-	-	T	63742177	C	T	63742177	2	4	895	1	0	0	0	0	0	0	0	1	3815	796	28	4		4	COX8A	11	63742177	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3104983	63742177	71264339	218	72819										
CNIH2	0	genome.wustl.edu	37	chr11	66050245	66050245	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaacgcatctgctgcctcctGaggaaggtcagtgtcagggc	14	11	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	66050245	66050245	G	A	SNP	CNIH2	ENST00000311445	human	ensembl	69_37n	1	known	silent	c.192	p.L64	0.998	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH2	HGNC	ENSG00000174871	37	0	0	16	4	20	-	-	-	A	66050245	G	A	66050245	2	1	895	1	0	0	0	0	0	0	0	1	3633	1277	45	2		2	CNIH2	11	66050245	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2308068	66050245	68956271	219	72820										
NPAS4	0	genome.wustl.edu	37	chr11	66188755	66188755	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggccgaagcggacaaggtCcggctgtcctacctgcacat	12	14	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	66188755	66188755	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	silent	c.105	p.V35	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	32	0	0	22	9	29.03	-	-	-	T	66188755	C	T	66188755	2	4	895	1	0	0	0	0	0	0	0	1	10637	842	30	2		2	NPAS4	11	66188755	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	138510	66188755	68817761	220	72821										
NPAS4	0	genome.wustl.edu	37	chr11	66192503	66192503	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acgcccgtggaagacatcttCatggatctctctaccccaga	8	14	4	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	66192503	66192503	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	69_37n	1	known	silent	c.2142	p.F714	1.000	NULL	pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	46	0	0	23	11	32.35	-	-	-	T	66192503	C	T	66192503	2	4	895	1	0	0	0	0	0	0	0	1	10637	825	29	2		2	NPAS4	11	66192503	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3748	66192503	68814013	221	72822										
MRPL11	0	genome.wustl.edu	37	chr11	66203553	66203553	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aggaagatggctcgttccttCtggaaagctgcaagctcttc	11	10	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	66203553	66203553	C	T	SNP	MRPL11	ENST00000310999	human	ensembl	69_37n	-1	known	silent	c.504	p.Q168	1.000	NULL	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	-	no_errors	MRPL11	HGNC	ENSG00000174547	61	0	0	38	15	28.3	-	-	-	T	66203553	C	T	66203553	2	4	895	1	0	0	0	0	0	0	0	1	9848	912	32	2		2	MRPL11	11	66203553	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	11050	66203553	68802963	222	72823										
LRP5	0	genome.wustl.edu	37	chr11	68181258	68181258	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actggaatctgcacagcattGagcgggccgacaagactagc	12	11	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	68181258	68181258	G	A	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	missense	c.2605	p.E869K	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	28	0	0	32	7	17.95	-	-	-	A	68181258	G	A	68181258	3	1	895	1	0	0	0	0	1	0	0	0	9026	1291	45	2	2651	2	LRP5	11	68181258	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1977705	68181258	66825258	223	72824										
SYTL2	0	genome.wustl.edu	37	chr11	85445351	85445351	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cccaggactctgtggaagctCatccttcactgcagagaatc	9	13	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	85445351	85445351	C	T	SNP	SYTL2	ENST00000316356	human	ensembl	69_37n	-1	known	missense	c.1021	p.E341K	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain	-	no_errors	SYTL2	HGNC	ENSG00000137501	96	0	0	19	26	57.78	-	-	-	T	85445351	C	T	85445351	3	4	895	1	0	0	0	0	1	0	0	0	15575	835	29	2	4319	2	SYTL2	11	85445351	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	17264093	85445351	49561165	224	72825										
CD3E	0	genome.wustl.edu	37	chr11	118179150	118179150	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttccttttcaggtaatgaaGaaatgggtaagaagatttcc	9	5	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	118179150	118179150	G	A	SNP	CD3E	ENST00000361763	human	ensembl	69_37n	1	known	missense	c.79	p.E27K	0.000	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3E	HGNC	ENSG00000198851	91	0	0	25	18	41.86	-	-	-	A	118179150	G	A	118179150	3	1	895	1	0	0	0	0	1	0	0	0	3040	943	33	2	89	2	CD3E	11	118179150	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	32733799	118179150	16827366	225	72826										
SCN3B	0	genome.wustl.edu	37	chr11	123508916	123508916	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gttttcttgggctgcctcttCggcttttgagacctttctgt	10	10	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	123508916	123508916	C	G	SNP	SCN3B	ENST00000299333	human	ensembl	69_37n	-1	known	missense	c.562	p.E188Q	1.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN3B	HGNC	ENSG00000166257	82	0	0	36	28	43.75	-	-	-	G	123508916	C	G	123508916	3	3	895	1	0	0	0	0	1	0	0	0	14007	893	31	3	93	3	SCN3B	11	123508916	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5329766	123508916	11497600	226	72827										
NCAPD3	0	genome.wustl.edu	37	chr11	134029897	134029897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtacttcttcatgtcatactCaagctctgatgccagctgtt	7	11	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	11	134029897	134029897	C	G	SNP	NCAPD3	ENST00000534548	human	ensembl	69_37n	-1	known	missense	c.3757	p.E1253Q	1.000	pirsf_Condns_HCP-6	superfamily_ARM-type_fold,pirsf_Condns_HCP-6	-	no_errors	NCAPD3	HGNC	ENSG00000151503	84	0	0	51	39	43.33	-	-	-	G	134029897	C	G	134029897	3	3	895	1	0	0	0	0	1	0	0	0	10278	835	29	2	767	2	NCAPD3	11	134029897	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10520981	134029897	976619	227	72828										
FKBP4	0	genome.wustl.edu	37	chr12	2910381	2910381	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggcacgggctgatttccaGaaggtcctgcagctctaccc	11	14	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	2910381	2910381	G	A	SNP	FKBP4	ENST00000539181	human	ensembl	69_37n	1	putative	missense	c.38	p.R13K	1.000	pfscan_TPR-contain_dom	pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FKBP4	HGNC	ENSG00000004478	37	0	0	32	15	31.91	-	-	-	A	2910381	G	A	2910381	3	1	895	1	0	0	0	0	1	0	0	0	5956	933	33	2	1165	2	FKBP4	12	2910381	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		2910381	130941514	228	72829										
VWF	0	genome.wustl.edu	37	chr12	6092323	6092323	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acagaggccttaccgcaggtGaagttgggtctgcactcgcc	13	12	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	6092323	6092323	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.7074	p.F2358	0.985	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	45	0	0	23	8	25.81	-	-	-	A	6092323	G	A	6092323	2	1	895	1	0	0	0	0	0	0	0	1	17343	1281	45	2		2	VWF	12	6092323	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3181942	6092323	127759572	229	72830										
ATN1	0	genome.wustl.edu	37	chr12	7046168	7046168	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actcttcctcttccacttctCaagggtcctacccatgttca	4	16	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	7046168	7046168	C	G	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.1738	p.Q580E	0.996	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	38	0	0	24	9	27.27	-	-	-	G	7046168	C	G	7046168	3	3	895	1	0	0	0	0	1	0	0	0	1115	827	29	2	1752	2	ATN1	12	7046168	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	953845	7046168	126805727	230	72831										
DNM1L	0	genome.wustl.edu	37	chr12	32895575	32895575	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atcatgtgaaagacactcttCagagtgagctagtaggccag	11	8	3	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	32895575	32895575	C	T	SNP	DNM1L	ENST00000553257	human	ensembl	69_37n	1	known	nonsense	c.2086	p.Q696*	1.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	DNM1L	HGNC	ENSG00000087470	120	0	0	61	37	37.76	-	-	-	T	32895575	C	T	32895575	4	4	895	1	0	0	0	0	0	1	0	0	4706	827	29	2	2121	2	DNM1L	12	32895575	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	25849407	32895575	100956320	231	72832										
LRRK2	0	genome.wustl.edu	37	chr12	40681261	40681261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttttctgaagatgtgctgtCtaaatttgatgaatggacct	9	5	2	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	40681261	40681261	C	G	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	1	known	missense	c.2609	p.S870C	0.061	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	121	0	0	83	38	31.4	-	-	-	G	40681261	C	G	40681261	3	3	895	1	0	0	0	0	1	0	0	0	9099	913	32	2	2687	2	LRRK2	12	40681261	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	7785686	40681261	93170634	232	72833										
ZNF385A	0	genome.wustl.edu	37	chr12	54778269	54778269	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggctcgagtgggaagggcagGatctgcttgaggtccagtgg	19	7	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	54778269	54778269	G	A	SNP	ZNF385A	ENST00000338010	human	ensembl	69_37n	-1	known	silent	c.90	p.I30	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642	32	0	0	10	7	41.18	-	-	-	A	54778269	G	A	54778269	2	1	895	1	0	0	0	0	0	0	0	1	17972	1164	41	2		2	ZNF385A	12	54778269	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	14097008	54778269	79073626	233	72834										
OS9	0	genome.wustl.edu	37	chr12	58088532	58088532	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cgaccctcccttctttcccaGagccaatcttcggacgtggt	8	16	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	58088532	58088532	G	A	SNP	OS9	ENST00000315970	human	ensembl	69_37n	1	known	splice_site	c.163-1	e2-1	1.000	-	-	-	no_errors	OS9	HGNC	ENSG00000135506	37	0	0	21	10	32.26	-	-	-	A	58088532	G	A	58088532	5	1	895	1	0	0	0	0	0	0	1	0	11345	956	33	2	168	2	OS9	12	58088532	Splice_Site	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3310263	58088532	75763363	234	72835										
NUP107	0	genome.wustl.edu	37	chr12	69094517	69094517	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttattcaggtgaatatactGagtaaaatagtgagtcgagc	10	4	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	69094517	69094517	G	A	SNP	NUP107	ENST00000229179	human	ensembl	69_37n	1	known	silent	c.564	p.L188	0.554	NULL	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	98	0	0	34	18	34.62	-	-	-	A	69094517	G	A	69094517	2	1	895	1	0	0	0	0	0	0	0	1	10826	1277	45	2		2	NUP107	12	69094517	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	11005985	69094517	64757378	235	72836										
PLEKHG7	0	genome.wustl.edu	37	chr12	93149662	93149662	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaatttagatatctacaggaGattatagtgtggccaccgct	9	7	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	93149662	93149662	G	C	SNP	PLEKHG7	ENST00000344636	human	ensembl	69_37n	1	known	missense	c.552	p.E184D	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG7	HGNC	ENSG00000187510	48	0	0	33	8	19.51	-	-	-	C	93149662	G	C	93149662	3	2	895	1	0	0	0	0	1	0	0	0	12149	933	33	2	574	2	PLEKHG7	12	93149662	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	24055145	93149662	40702233	236	72837										
STAB2	0	genome.wustl.edu	37	chr12	104146997	104146997	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcctcctcttcctcatccaGataccactgttggggtgttc	7	14	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	104146997	104146997	G	C	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	1	known	splice_site	c.6581-1	e61-1	1.000	-	-	-	no_errors	STAB2	HGNC	ENSG00000136011	62	0	0	49	21	30	-	-	-	C	104146997	G	C	104146997	5	2	895	1	0	0	0	0	0	0	1	0	15329	956	33	2	6822	2	STAB2	12	104146997	Splice_Site	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10997335	104146997	29704898	237	72838										
FOXN4	0	genome.wustl.edu	37	chr12	109725248	109725248	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtgtttggggtgcagttcttGagatgaatgcacagccacgt	14	7	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	109725248	109725248	G	C	SNP	FOXN4	ENST00000299162	human	ensembl	69_37n	-1	known	missense	c.550	p.Q184E	0.971	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN4	HGNC	ENSG00000139445	34	0	0	7	6	46.15	-	-	-	C	109725248	G	C	109725248	3	2	895	1	0	0	0	0	1	0	0	0	6070	1299	45	2	1023	2	FOXN4	12	109725248	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	5578251	109725248	24126647	238	72839										
UBE3B	0	genome.wustl.edu	37	chr12	109958979	109958979	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacgagcagcttaggcagctCtcccagcacgccatgaaggg	12	13	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	109958979	109958979	C	G	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	silent	c.2103	p.L701	0.860	superfamily_HECT,smart_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	56	0	0	30	21	41.18	-	-	-	G	109958979	C	G	109958979	2	3	895	1	0	0	0	0	0	0	0	1	16977	900	32	2		2	UBE3B	12	109958979	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	233731	109958979	23892916	239	72840										
RPH3A	0	genome.wustl.edu	37	chr12	113285625	113285625	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctcgagctgagaaaatggaaGagatggagcaggagcgaatc	15	6	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	113285625	113285625	G	A	SNP	RPH3A	ENST00000389385	human	ensembl	69_37n	1	known	missense	c.208	p.E70K	1.000	pfam_Rabphilin3A_effector_Zn-bd,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	pfam_C2_Ca-dep,pfam_Rabphilin3A_effector_Zn-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RPH3A	HGNC	ENSG00000089169	47	0	0	33	17	34	-	-	-	A	113285625	G	A	113285625	3	1	895	1	0	0	0	0	1	0	0	0	13637	943	33	2	218	2	RPH3A	12	113285625	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3326646	113285625	20566270	240	72841										
CCDC60	0	genome.wustl.edu	37	chr12	119960749	119960749	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccttttgtgtttcagtgagaGatccagcagtacaagtgcag	11	8	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	119960749	119960749	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	missense	c.1046	p.R349K	0.030	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	86	0	0	69	29	29.59	-	-	-	A	119960749	G	A	119960749	3	1	895	1	0	0	0	0	1	0	0	0	2858	942	33	2	1084	2	CCDC60	12	119960749	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6675124	119960749	13891146	241	72842										
CAMKK2	0	genome.wustl.edu	37	chr12	121693401	121693401	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaagtagaaacgggcctggtCttcagagagtggtttgaggg	17	5	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	121693401	121693401	C	T	SNP	CAMKK2	ENST00000324774	human	ensembl	69_37n	-1	known	missense	c.859	p.D287N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	58	0	0	18	12	40	-	-	-	T	121693401	C	T	121693401	3	4	895	1	0	0	0	0	1	0	0	0	2632	913	32	2	953	2	CAMKK2	12	121693401	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1732652	121693401	12158494	242	72843										
RILPL1	0	genome.wustl.edu	37	chr12	123983136	123983136	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgtgctccccctgcagcctCtctcgcaacttccccagctc	6	21	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	123983136	123983136	C	G	SNP	RILPL1	ENST00000376874	human	ensembl	69_37n	-1	known	missense	c.756	p.E252D	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026	45	0	0	30	16	34.78	-	-	-	G	123983136	C	G	123983136	3	3	895	1	0	0	0	0	1	0	0	0	13445	912	32	2	471	2	RILPL1	12	123983136	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2289735	123983136	9868759	243	72844										
DNAH10	0	genome.wustl.edu	37	chr12	124397850	124397850	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actcatctcgggtctggggtCagaaaacatcaggttagcgc	12	10	5	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	124397850	124397850	C	T	SNP	DNAH10	ENST00000540041	human	ensembl	69_37n	1	putative	nonsense	c.769	p.Q257*	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNAH10	HGNC	ENSG00000197653	45	0	0	24	15	38.46	-	-	-	T	124397850	C	T	124397850	4	4	895	1	0	0	0	0	0	1	0	0	4634	838	29	2	10220	2	DNAH10	12	124397850	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	414714	124397850	9454045	244	72845										
DNAH10	0	genome.wustl.edu	37	chr12	124408387	124408387	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagcagaagggagagtccctCaagaagaactagatttcttt	10	7	2	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	12	124408387	124408387	C	G	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.11230	p.Q3744E	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	48	0	0	43	15	25.86	-	-	-	G	124408387	C	G	124408387	3	3	895	1	0	0	0	0	1	0	0	0	4634	827	29	2	11488	2	DNAH10	12	124408387	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10537	124408387	9443508	245	72846										
NUPL1	0	genome.wustl.edu	37	chr13	25901082	25901082	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaatcttggttcagcaatttGaggtacagcttcagcagtac	10	8	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	25901082	25901082	G	C	SNP	NUPL1	ENST00000381736	human	ensembl	69_37n	1	known	missense	c.1060	p.E354Q	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	104	1	0.95	57	29	33.72	-	-	-	C	25901082	G	C	25901082	3	2	895	1	0	0	0	0	1	0	0	0	10847	1291	45	2	1102	2	NUPL1	13	25901082	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		25901082	89268796	246	72847										
RNF6	0	genome.wustl.edu	37	chr13	26788189	26788189	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggtggaaagattgtcaatCtgctctttggttaaaccacg	10	8	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	26788189	26788189	C	T	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	silent	c.1830	p.Q610	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	117	0	0	78	43	35.54	-	-	-	T	26788189	C	T	26788189	2	4	895	1	0	0	0	0	0	0	0	1	13584	912	32	2		2	RNF6	13	26788189	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	887107	26788189	88381689	247	72848										
PDS5B	0	genome.wustl.edu	37	chr13	33281154	33281154	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccaactgatcaagccatcaGagcaggtcttgaactgctta	8	11	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	33281154	33281154	G	A	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	1	known	missense	c.1940	p.R647K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	92	0	0	45	11	19.64	-	-	-	A	33281154	G	A	33281154	3	1	895	1	0	0	0	0	1	0	0	0	11765	942	33	2	2006	2	PDS5B	13	33281154	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6492965	33281154	81888724	248	72849										
MAB21L1	0	genome.wustl.edu	37	chr13	36050059	36050059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ataaagcaccacttcaaattCggtgggggagatgacctcga	11	9	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	36050059	36050059	C	T	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	missense	c.217	p.E73K	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	45	0	0	27	18	40	-	-	-	T	36050059	C	T	36050059	3	4	895	1	0	0	0	0	1	0	0	0	9208	893	31	1	866	1	MAB21L1	13	36050059	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2768905	36050059	79119819	249	72850										
FAM48A	0	genome.wustl.edu	37	chr13	37584769	37584769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gctttgctcaggtctgttctCggcagagccaagctgagaca	12	11	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	37584769	37584769	C	T	SNP	FAM48A	ENST00000350612	human	ensembl	69_37n	-1	known	missense	c.2122	p.E708K	1.000	NULL	pfam_Spt20	-	no_errors	FAM48A	HGNC	ENSG00000102710	75	0	0	47	26	35.62	-	-	-	T	37584769	C	T	37584769	3	4	895	1	0	0	0	0	1	0	0	0	5618	893	31	1	225	1	FAM48A	13	37584769	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1534710	37584769	77585109	250	72851										
RCBTB1	0	genome.wustl.edu	37	chr13	50108389	50108389	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcaaaacttaaagcagaattCttctaaatcctggacacaca	5	10	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	50108389	50108389	C	G	SNP	RCBTB1	ENST00000258646	human	ensembl	69_37n	-1	known	missense	c.1465	p.E489Q	1.000	superfamily_BTB/POZ_fold	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_Reg_chr_condens,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	51	0	0	27	8	22.86	-	-	-	G	50108389	C	G	50108389	3	3	895	1	0	0	0	0	1	0	0	0	13254	922	32	2	134	2	RCBTB1	13	50108389	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	12523620	50108389	65061489	251	72852										
TPP2	0	genome.wustl.edu	37	chr13	103299562	103299562	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttgttttttaatagcccaaGagtggggaagtaactccaag	10	6	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	103299562	103299562	G	A	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	silent	c.2496	p.K832	1.000	pfam_Peptidase_S8A_TPPII	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	111	0	0	49	21	30	-	-	-	A	103299562	G	A	103299562	2	1	895	1	0	0	0	0	0	0	0	1	16508	933	33	2		2	TPP2	13	103299562	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	53191173	103299562	11870316	252	72853										
MCF2L	0	genome.wustl.edu	37	chr13	113748898	113748898	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggtcaagtgcagaggagcaGattaactcgtccgacgcaga	13	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	113748898	113748898	G	C	SNP	MCF2L	ENST00000375604	human	ensembl	69_37n	1	known	missense	c.3195	p.Q1065H	0.000	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	47	0	0	15	7	31.82	-	-	-	C	113748898	G	C	113748898	3	2	895	1	0	0	0	0	1	0	0	0	9450	933	33	2	3396	2	MCF2L	13	113748898	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10449336	113748898	1420980	253	72854										
TMCO3	0	genome.wustl.edu	37	chr13	114188406	114188406	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggttttgattggtcagattCttttttcactagcggcggtt	11	6	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	114188406	114188406	C	G	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	1	known	missense	c.1390	p.L464V	0.999	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	266	0	0	175	45	20.36	-	-	-	G	114188406	C	G	114188406	3	3	895	1	0	0	0	0	1	0	0	0	16092	913	32	2	1420	2	TMCO3	13	114188406	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	439508	114188406	981472	254	72855										
ATP4B	0	genome.wustl.edu	37	chr13	114309253	114309253	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccacgtagtacaggctgatCcacactgcgacacaaggcag	11	13	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	114309253	114309253	C	G	SNP	ATP4B	ENST00000335288	human	ensembl	69_37n	-1	known	missense	c.117	p.W39C	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP4B	HGNC	ENSG00000186009	32	0	0	25	10	28.57	-	-	-	G	114309253	C	G	114309253	3	3	895	1	0	0	0	0	1	0	0	0	1150	856	30	2	782	2	ATP4B	13	114309253	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	120847	114309253	860625	255	72856										
ATP4B	0	genome.wustl.edu	37	chr13	114312444	114312444	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggccacacgtcttcttctCctgcagagccgccatcgtcc	8	18	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	13	114312444	114312444	C	G	SNP	ATP4B	ENST00000335288	human	ensembl	69_37n	-1	known	missense	c.16	p.E6Q	1.000	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP4B	HGNC	ENSG00000186009	15	0	0	15	7	31.82	-	-	-	G	114312444	C	G	114312444	3	3	895	1	0	0	0	0	1	0	0	0	1150	864	30	2	887	2	ATP4B	13	114312444	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3191	114312444	857434	256	72857										
MYH6	0	genome.wustl.edu	37	chr14	23858138	23858138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggtcctccactgggccacctCcgagttggccttggacagga	13	14	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	23858138	23858138	C	T	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	missense	c.4105	p.E1369K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	36	0	0	47	33	41.25	-	-	-	T	23858138	C	T	23858138	3	4	895	1	0	0	0	0	1	0	0	0	10110	864	30	2	1758	2	MYH6	14	23858138	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		23858138	83491402	257	72858										
MYH6	0	genome.wustl.edu	37	chr14	23867983	23867983	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagagagtggccatgagcttGagggaggacttctggtacag	16	6	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	23867983	23867983	G	C	SNP	MYH6	ENST00000356287	human	ensembl	69_37n	-1	known	silent	c.1845	p.L615	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	102	0	0	105	48	31.37	-	-	-	C	23867983	G	C	23867983	2	2	895	1	0	0	0	0	0	0	0	1	10110	1277	45	2		2	MYH6	14	23867983	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	9845	23867983	83481557	258	72859										
FOXA1	0	genome.wustl.edu	37	chr14	38061312	38061312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtgccaccttgacgaagcagTcattgaaggacagcgagtgg	14	9	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	38061312	38061312	T	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.677	p.D226G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	45	0	0	29	13	30.95	-	-	-	C	38061312	T	C	38061312	3	2	895	1	0	0	0	0	1	0	0	0	6035	1667	58	5	745	5	FOXA1	14	38061312	Missense_Mutation	SNP	T	TCGA-EW-A1J5-01A-11D-A13L-09	14193329	38061312	69288228	259	72860										
KIAA0586	0	genome.wustl.edu	37	chr14	58895061	58895061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacttcgtgaggtagtttctCaaaatcatggagatcatttg	10	6	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	58895061	58895061	C	G	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	missense	c.34	p.Q12E	0.985	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	122	0	0	98	44	30.99	-	-	-	G	58895061	C	G	58895061	3	3	895	1	0	0	0	0	1	0	0	0	8238	827	29	2	81	2	KIAA0586	14	58895061	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	20833749	58895061	48454479	260	72861										
PPM1A	0	genome.wustl.edu	37	chr14	60750229	60750229	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accttgagaaagtttgcaatGaagtagtcgacacctgtttg	10	7	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	60750229	60750229	G	A	SNP	PPM1A	ENST00000325642	human	ensembl	69_37n	1	known	missense	c.1027	p.E343K	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1A	HGNC	ENSG00000100614	68	0	0	37	20	35.09	-	-	-	A	60750229	G	A	60750229	3	1	895	1	0	0	0	0	1	0	0	0	12412	1291	45	2	1033	2	PPM1A	14	60750229	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1855168	60750229	46599311	261	72862										
SYNE2	0	genome.wustl.edu	37	chr14	64691728	64691728	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acccagcagttcagagcagtGagaactacagaaggcgagga	13	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	64691728	64691728	G	A	SNP	SYNE2	ENST00000554584	human	ensembl	69_37n	1	novel	missense	c.20176	p.E6726K	0.000	NULL	pfam_CH-domain,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_Calpain_domain_III,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain	-	no_errors	SYNE2	HGNC	ENSG00000054654	54	0	0	43	17	28.33	-	-	-	A	64691728	G	A	64691728	3	1	895	1	0	0	0	0	1	0	0	0	15538	1277	45	2	20980	2	SYNE2	14	64691728	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3941499	64691728	42657812	262	72863										
SYNE2	0	genome.wustl.edu	37	chr14	64692244	64692244	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aatgggccaccccccacataGagggcatagctggccacagt	11	14	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	64692244	64692244	G	C	SNP	SYNE2	ENST00000554584	human	ensembl	69_37n	1	novel	missense	c.20419	p.E6807Q	0.622	NULL	pfam_CH-domain,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_Calpain_domain_III,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain	-	no_errors	SYNE2	HGNC	ENSG00000054654	22	0	0	13	6	31.58	-	-	-	C	64692244	G	C	64692244	3	2	895	1	0	0	0	0	1	0	0	0	15538	937	33	2	21227	2	SYNE2	14	64692244	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	516	64692244	42657296	263	72864										
PCNX	0	genome.wustl.edu	37	chr14	71540426	71540426	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgatagtcacaaagtacattCtggagggttatagcatcact	9	7	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	71540426	71540426	C	T	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	1	known	silent	c.5017	p.L1673	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	106	0	0	76	40	34.48	-	-	-	T	71540426	C	T	71540426	2	4	895	1	0	0	0	0	0	0	0	1	11664	912	32	2		2	PCNX	14	71540426	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6848182	71540426	35809114	264	72865										
SIPA1L1	0	genome.wustl.edu	37	chr14	72139289	72139289	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacctcctgagaacatctgtCacggtgaaggttgtcatcat	10	10	4	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	72139289	72139289	C	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	69_37n	1	known	silent	c.3054	p.V1018	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	52	0	0	31	22	41.51	-	-	-	A	72139289	C	A	72139289	2	1	895	1	0	0	0	0	0	0	0	1	14418	813	29	2		2	SIPA1L1	14	72139289	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	598863	72139289	35210251	265	72866										
CCDC88C	0	genome.wustl.edu	37	chr14	91757388	91757388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttgatccatgattttttcttCcagcttttccttatgtcttc	4	10	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	91757388	91757388	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.4153	p.E1385K	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	203	0	0	137	56	29.02	-	-	-	T	91757388	C	T	91757388	3	4	895	1	0	0	0	0	1	0	0	0	2892	864	30	2	1961	2	CCDC88C	14	91757388	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	19618099	91757388	15592152	266	72867										
CDC42BPB	0	genome.wustl.edu	37	chr14	103466003	103466003	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agcttgtcttcaaatttgctGagcagggtcagtaaatcacc	9	9	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	103466003	103466003	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	silent	c.495	p.L165	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	100	0	0	76	18	19.15	-	-	-	A	103466003	G	A	103466003	2	1	895	1	0	0	0	0	0	0	0	1	3102	1277	45	2		2	CDC42BPB	14	103466003	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	11708615	103466003	3883537	267	72868										
AHNAK2	0	genome.wustl.edu	37	chr14	105406830	105406830	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccttgtctaaaaccaggctGagttttgagtcctccacgct	8	12	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	105406830	105406830	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.14958	p.L4986	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	74	0	0	46	18	28.12	-	-	-	C	105406830	G	C	105406830	2	2	895	1	0	0	0	0	0	0	0	1	415	1277	45	2		2	AHNAK2	14	105406830	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1940827	105406830	1942710	268	72869										
AHNAK2	0	genome.wustl.edu	37	chr14	105413693	105413693	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cagttgggcagaggggggctGaatgctgatgtcagtggtct	18	6	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	14	105413693	105413693	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.8095	p.Q2699E	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	94	0	0	59	25	29.76	-	-	-	C	105413693	G	C	105413693	3	2	895	1	0	0	0	0	1	0	0	0	415	1299	45	2	9296	2	AHNAK2	14	105413693	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6863	105413693	1935847	269	72870										
GABRA5	0	genome.wustl.edu	37	chr15	27185157	27185157	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acctaccttccctgcataatGaccgtgatcttatcacaggt	6	13	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	27185157	27185157	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	missense	c.810	p.M270I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	74	0	0	82	48	36.92	-	-	-	A	27185157	G	A	27185157	3	1	895	1	0	0	0	0	1	0	0	0	6213	1290	45	2	836	2	GABRA5	15	27185157	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		27185157	75346235	270	72871										
HERC2	0	genome.wustl.edu	37	chr15	28369301	28369301	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcaggggcagaagagctcgGagaggtggtgcagcagcagc	19	8	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	28369301	28369301	G	C	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.13070	p.S4357C	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	70	0	0	22	16	42.11	-	-	-	C	28369301	G	C	28369301	3	2	895	1	0	0	0	0	1	0	0	0	7109	1174	41	2	1470	2	HERC2	15	28369301	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1184144	28369301	74162091	271	72872										
HERC2	0	genome.wustl.edu	37	chr15	28391398	28391398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cttacctgaccgcacggagaCgatcctgttgacgccgtcca	10	15	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	28391398	28391398	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.10993	p.V3665I	1.000	superfamily_CUB	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	47	0	0	50	13	20.63	-	-	-	T	28391398	C	T	28391398	3	4	895	1	0	0	0	0	1	0	0	0	7109	536	19	1	3603	1	HERC2	15	28391398	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	22097	28391398	74139994	272	72873										
APBA2	0	genome.wustl.edu	37	chr15	29346361	29346361	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actatgacgagggcctccctGaggaggaggagggcatcacc	15	11	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	29346361	29346361	G	A	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.274	p.E92K	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	27	0	0	11	9	45	-	-	-	A	29346361	G	A	29346361	3	1	895	1	0	0	0	0	1	0	0	0	758	1291	45	2	276	2	APBA2	15	29346361	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	954963	29346361	73185031	273	72874										
ZFYVE19	0	genome.wustl.edu	37	chr15	41105568	41105568	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actatcgcctcccagacagtGatgacgacgaggatgaggag	13	10	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	41105568	41105568	G	A	SNP	ZFYVE19	ENST00000355341	human	ensembl	69_37n	1	known	missense	c.1063	p.D355N	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE19	HGNC	ENSG00000166140	55	0	0	26	9	25.71	-	-	-	A	41105568	G	A	41105568	3	1	895	1	0	0	0	0	1	0	0	0	17761	1290	45	2	1093	2	ZFYVE19	15	41105568	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	11759207	41105568	61425824	274	72875										
MGA	0	genome.wustl.edu	37	chr15	42041852	42041852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acaaaactcaggagctgctaCctcagaagaaactctgaatg	8	10	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	42041852	42041852	C	T	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.6047	p.T2016I	0.245	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	67	0	0	38	13	25.49	-	-	-	T	42041852	C	T	42041852	3	4	895	1	0	0	0	0	1	0	0	0	9611	507	18	4	6109	4	MGA	15	42041852	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	936284	42041852	60489540	275	72876										
UBR1	0	genome.wustl.edu	37	chr15	43281144	43281144	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagagaataaccatttccttGatgctatttgaatatttaat	5	5	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	43281144	43281144	G	C	SNP	UBR1	ENST00000290650	human	ensembl	69_37n	-1	known	missense	c.3870	p.I1290M	0.999	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459	64	0	0	39	15	27.78	-	-	-	C	43281144	G	C	43281144	3	2	895	1	0	0	0	0	1	0	0	0	16998	1280	45	2	1431	2	UBR1	15	43281144	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1239292	43281144	59250248	276	72877										
CATSPER2	0	genome.wustl.edu	37	chr15	43939258	43939258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cagttctcacctatttcaacCatcaatatgatcgtattcaa	3	11	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	43939258	43939258	C	T	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	missense	c.378	p.M126I	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	108	0	0	79	30	27.52	-	-	-	T	43939258	C	T	43939258	3	4	895	1	0	0	0	0	1	0	0	0	2713	594	21	4	1293	4	CATSPER2	15	43939258	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	658114	43939258	58592134	277	72878										
DUOX2	0	genome.wustl.edu	37	chr15	45389584	45389584	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agagcatagctgccatggatGatgagctggagacacggcca	14	9	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	45389584	45389584	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.3699	p.I1233	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	82	0	0	86	26	23.21	-	-	-	A	45389584	G	A	45389584	2	1	895	1	0	0	0	0	0	0	0	1	4836	1280	45	2		2	DUOX2	15	45389584	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1450326	45389584	57141808	278	72879										
MYEF2	0	genome.wustl.edu	37	chr15	48443700	48443700	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaaggaatctccaaagccttGatttattccaatatcaccac	4	11	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	48443700	48443700	G	A	SNP	MYEF2	ENST00000324324	human	ensembl	69_37n	-1	known	nonsense	c.1276	p.Q426*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177	127	0	0	112	36	24.32	-	-	-	A	48443700	G	A	48443700	4	1	895	1	0	0	0	0	0	1	0	0	10096	1299	45	2	546	2	MYEF2	15	48443700	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3054116	48443700	54087692	279	72880										
VPS13C	0	genome.wustl.edu	37	chr15	62238536	62238536	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atggactgcaaatctacattCataactataatatctttaag	4	7	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	62238536	62238536	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.4950	p.M1650I	0.007	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	117	0	0	45	27	37.5	-	-	-	T	62238536	C	T	62238536	3	4	895	1	0	0	0	0	1	0	0	0	17288	826	29	2	6507	2	VPS13C	15	62238536	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	13794836	62238536	40292856	280	72881										
HERC1	0	genome.wustl.edu	37	chr15	63947976	63947976	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgacttatcatagttaggtCttagtttggcccctttgtct	8	9	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	63947976	63947976	C	G	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.10049	p.R3350T	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	144	0	0	104	37	26.24	-	-	-	G	63947976	C	G	63947976	3	3	895	1	0	0	0	0	1	0	0	0	7108	913	32	2	4652	2	HERC1	15	63947976	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1709440	63947976	38583416	281	72882										
SCAPER	0	genome.wustl.edu	37	chr15	77067266	77067266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gatgagattctatagtattaGaagttccatctccaacaaat	6	7	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	77067266	77067266	G	A	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.965	p.S322F	0.007	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	98	0	0	62	38	38	-	-	-	A	77067266	G	A	77067266	3	1	895	1	0	0	0	0	1	0	0	0	13965	942	33	2	3333	2	SCAPER	15	77067266	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	13119290	77067266	25464126	282	72883										
C15orf26	0	genome.wustl.edu	37	chr15	81436030	81436030	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgtcaagtgaccacaggaccCtcctgaaatcgtctaagagg	10	11	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	81436030	81436030	C	G	SNP	C15orf26	ENST00000286732	human	ensembl	69_37n	1	known	missense	c.505	p.L169V	0.924	NULL	NULL	-	no_errors	C15orf26	HGNC	ENSG00000156206	101	0	0	69	28	28.87	-	-	-	G	81436030	C	G	81436030	3	3	895	1	0	0	0	0	1	0	0	0	1799	681	24	4	523	4	C15orf26	15	81436030	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4368764	81436030	21095362	283	72884										
LRRK1	0	genome.wustl.edu	37	chr15	101595248	101595248	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cacaagaaaaacatcatcttCtgtgacctgaagtcggacaa	7	10	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	15	101595248	101595248	C	T	SNP	LRRK1	ENST00000526457	human	ensembl	69_37n	1	known	missense	c.182	p.S61F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRRK1	HGNC	ENSG00000154237	89	0	0	67	35	34.31	-	-	-	T	101595248	C	T	101595248	3	4	895	1	0	0	0	0	1	0	0	0	9098	912	32	2	4254	2	LRRK1	15	101595248	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	20159218	101595248	936144	284	72885										
ITFG3	0	genome.wustl.edu	37	chr16	309544	309544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggatccaagatgttctttttCtttataaaaacaccaacagc	5	9	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	309544	309544	C	G	SNP	ITFG3	ENST00000301678	human	ensembl	69_37n	1	known	missense	c.331	p.L111V	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	ITFG3	HGNC	ENSG00000167930	124	0	0	125	32	20.38	-	-	-	G	309544	C	G	309544	3	3	895	1	0	0	0	0	1	0	0	0	7925	913	32	2	337	2	ITFG3	16	309544	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		309544	90045209	285	72886										
ZC3H7A	0	genome.wustl.edu	37	chr16	11861345	11861345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tatttttttccatgatttatCttcaacattctttatcctac	1	9	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	11861345	11861345	C	T	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.1450	p.D484N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	225	0	0	147	49	25	-	-	-	T	11861345	C	T	11861345	3	4	895	1	0	0	0	0	1	0	0	0	17668	913	32	2	1509	2	ZC3H7A	16	11861345	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	11551801	11861345	78493408	286	72887										
NOMO1	0	genome.wustl.edu	37	chr16	14966096	14966096	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgctttgatttgtaggtcttCacctagtatcttgacattga	8	7	3	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	14966096	14966096	C	A	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	nonsense	c.1964	p.S655*	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	68	0	0	31	15	32.61	-	-	-	A	14966096	C	A	14966096	4	1	895	1	0	0	0	0	0	1	0	0	10603	838	29	2	2034	2	NOMO1	16	14966096	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3104751	14966096	75388657	287	72888										
SMG1	0	genome.wustl.edu	37	chr16	18903670	18903670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	actcatcagaataagacatcGatctctctgtgaatatataa	5	8	4	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	18903670	18903670	G	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.419	p.S140L	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	74	0	0	42	13	23.64	-	-	-	A	18903670	G	A	18903670	3	1	895	1	0	0	0	0	1	0	0	0	14884	1059	37	1	10806	1	SMG1	16	18903670	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3937574	18903670	71451083	288	72889										
XPO6	0	genome.wustl.edu	37	chr16	28112956	28112956	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcatgggacttgtggaccagGacctggagcagcacgttcac	13	11	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	28112956	28112956	G	A	SNP	XPO6	ENST00000304658	human	ensembl	69_37n	-1	known	silent	c.3099	p.V1033	0.993	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	50	0	0	28	15	34.88	-	-	-	A	28112956	G	A	28112956	2	1	895	1	0	0	0	0	0	0	0	1	17545	1161	41	2		2	XPO6	16	28112956	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	9209286	28112956	62241797	289	72890										
ABCC12	0	genome.wustl.edu	37	chr16	48162479	48162479	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcctctcactgtatgcctctGacctctgtttcttgcataaa	5	13	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	48162479	48162479	G	A	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469L	0.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	149	1	0.67	505	60	10.6	-	-	-	A	48162479	G	A	48162479	3	1	895	1	0	0	0	0	1	0	0	0	52	1294	45	2	2757	2	ABCC12	16	48162479	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	20049523	48162479	42192274	290	72891										
FAM65A	0	genome.wustl.edu	37	chr16	67578631	67578631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttgggcccctgcgctgccagGaggcatgggccctggagcgg	18	13	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	67578631	67578631	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	1	known	missense	c.2827	p.E943K	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	14	0	0	7	6	46.15	-	-	-	A	67578631	G	A	67578631	3	1	895	1	0	0	0	0	1	0	0	0	5644	1175	41	2	2825	2	FAM65A	16	67578631	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	19416152	67578631	22776122	291	72892										
CDH1	0	genome.wustl.edu	37	chr16	68849593	68849594	+	Frame_Shift_Ins	INS	-	-	G													0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtggaagtgtccgaggacttINStggcgtgggccaggaaatca							TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	68849593	68849594	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1496_1497	p.F499fs	0.962:0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	90	0	0	41	31	43.06	-	-	-	G	68849594	-	G	68849593	7	5	895	1	0	1	1	0	0	0	0	0	3124	1841	64	0	1534	0	CDH1	16	68849593	Frame_Shift_Ins	INS	-	TCGA-EW-A1J5-01A-11D-A13L-09	1270962	68849593	21505160	292	72893										
ADAMTS18	0	genome.wustl.edu	37	chr16	77327078	77327078	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gggagactggtacactggctCtcggggagggtttctgcggc	18	9	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	16	77327078	77327078	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.3084	p.E1028	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	32	0	0	9	10	50	-	-	-	T	77327078	C	T	77327078	2	4	895	1	0	0	0	0	0	0	0	1	263	912	32	2		2	ADAMTS18	16	77327078	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	8477485	77327078	13027675	293	72894										
CAMTA2	0	genome.wustl.edu	37	chr17	4872102	4872102	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccagctcctggttctgcttCagttccctcatcctgcagag	8	15	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	4872102	4872102	C	T	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.3625	p.E1209K	0.990	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	30	0	0	20	10	33.33	-	-	-	T	4872102	C	T	4872102	3	4	895	1	0	0	0	0	1	0	0	0	2639	835	29	2	104	2	CAMTA2	17	4872102	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		4872102	76323108	294	72895										
NCOR1	0	genome.wustl.edu	37	chr17	16062146	16062146	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggaggaggggacacgggcttCtcaggctcaggaggtttagc	18	8	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	16062146	16062146	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	silent	c.660	p.E220	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	58	0	0	26	28	51.85	-	-	-	T	16062146	C	T	16062146	2	4	895	1	0	0	0	0	0	0	0	1	10307	912	32	2		2	NCOR1	17	16062146	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	11190044	16062146	65133064	295	72896										
CCDC144B	0	genome.wustl.edu	37	chr17	18528419	18528419	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccttcacctggccattacctCttcttcctatccctcttgtc	3	18	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	18528419	18528419	C	G	SNP	CCDC144B	ENST00000450277	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	CCDC144B	HGNC	ENSG00000154874	22	0	0	18	6	25	-	-	-	G	18528419	C	G	18528419	1	3	895	0	1	0	0	0	0	0	0	0	2803	912	32	2		2	CCDC144B	17	18528419	RNA	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2466273	18528419	62666791	296	72897										
EPN2	0	genome.wustl.edu	37	chr17	19215401	19215401	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggggtgatgacctcagattaCagatggccctggaagaaagc	14	8	1	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	19215401	19215401	C	T	SNP	EPN2	ENST00000314728	human	ensembl	69_37n	1	known	nonsense	c.916	p.Q306*	1.000	smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134	76	0	0	51	40	43.96	-	-	-	T	19215401	C	T	19215401	4	4	895	1	0	0	0	0	0	1	0	0	5223	479	17	4	930	4	EPN2	17	19215401	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	686982	19215401	61979809	297	72898										
TADA2A	0	genome.wustl.edu	37	chr17	35827573	35827573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aacagtggaatttgaactccGaagggaaatcaagaggctcc	11	8	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	35827573	35827573	G	A	SNP	TADA2A	ENST00000225396	human	ensembl	69_37n	1	known	missense	c.839	p.R280Q	1.000	pirsf_Transcriptional_adaptor_2	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264	96	0	0	66	19	22.35	-	-	-	A	35827573	G	A	35827573	3	1	895	1	0	0	0	0	1	0	0	0	15602	1058	37	1	976	1	TADA2A	17	35827573	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	16612172	35827573	45367637	298	72899										
PIP4K2B	0	genome.wustl.edu	37	chr17	36955585	36955585	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcccggaatagcttcactttCtggcacacgaaatgcttctt	8	12	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	36955585	36955585	C	T	SNP	PIP4K2B	ENST00000269554	human	ensembl	69_37n	-1	known	silent	c.93	p.Q31	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720	20	0	0	59	17	22.37	-	-	-	T	36955585	C	T	36955585	2	4	895	1	0	0	0	0	0	0	0	1	12011	912	32	2		2	PIP4K2B	17	36955585	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1128012	36955585	44239625	299	72900										
STARD3	0	genome.wustl.edu	37	chr17	37809924	37809924	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgagaagcgaagggccatctCtgatgtccgccgcaccttct	11	13	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	37809924	37809924	C	T	SNP	STARD3	ENST00000336308	human	ensembl	69_37n	1	known	missense	c.140	p.S47F	1.000	pfam_MENTAL	pfam_MENTAL,pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	67	0	0	70	55	44	-	-	-	T	37809924	C	T	37809924	3	4	895	1	0	0	0	0	1	0	0	0	15348	913	32	2	142	2	STARD3	17	37809924	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	854339	37809924	43385286	300	72901										
GRB7	0	genome.wustl.edu	37	chr17	37898674	37898674	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cctctgcctgaggaggtaaaGaggtcccagcctctcctcat	10	14	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	37898674	37898674	G	C	SNP	GRB7	ENST00000445327	human	ensembl	69_37n	1	known	missense	c.189	p.K63N	1.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738	28	0	0	10	16	61.54	-	-	-	C	37898674	G	C	37898674	3	2	895	1	0	0	0	0	1	0	0	0	6810	933	33	2	122	2	GRB7	17	37898674	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	88750	37898674	43296536	301	72902										
KRTAP9-2	0	genome.wustl.edu	37	chr17	39383235	39383235	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cagctgtggccagagcagctCctgtgcacctgtgtactgca	12	13	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	39383235	39383235	C	G	SNP	KRTAP9-2	ENST00000377721	human	ensembl	69_37n	1	known	missense	c.329	p.S110C	0.403	NULL	NULL	-	no_errors	KRTAP9-2	HGNC	ENSG00000239886	108	0	0	132	113	45.93	-	-	-	G	39383235	C	G	39383235	3	3	895	1	0	0	0	0	1	0	0	0	8627	855	30	2	331	2	KRTAP9-2	17	39383235	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1484561	39383235	41811975	302	72903										
KRT19	0	genome.wustl.edu	37	chr17	39684181	39684181	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcggatcttcacctctagctCgccgttggccgcctccaggg	12	16	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	39684181	39684181	C	A	SNP	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	nonsense	c.319	p.E107*	0.958	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	37	0	0	53	18	25.35	-	-	-	A	39684181	C	A	39684181	4	1	895	1	0	0	0	0	0	1	0	0	8509	893	31	3	907	3	KRT19	17	39684181	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	300946	39684181	41511029	303	72904										
STAT5A	0	genome.wustl.edu	37	chr17	40447795	40447795	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcatcatccagtaccaggaGagcctgaggatccaaggtga	11	10	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	40447795	40447795	G	C	SNP	STAT5A	ENST00000345506	human	ensembl	69_37n	1	known	missense	c.534	p.E178D	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561	81	0	0	111	30	21.28	-	-	-	C	40447795	G	C	40447795	3	2	895	1	0	0	0	0	1	0	0	0	15359	933	33	2	548	2	STAT5A	17	40447795	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	763614	40447795	40747415	304	72905										
OR4D2	0	genome.wustl.edu	37	chr17	56247698	56247698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcctggtgatgctgaggtcaCatccaggggaggcaagaagg	16	8	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	56247698	56247698	C	T	SNP	OR4D2	ENST00000545221	human	ensembl	69_37n	1	known	missense	c.682	p.H228Y	0.137	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713	95	0	0	137	42	23.33	-	-	-	T	56247698	C	T	56247698	3	4	895	1	0	0	0	0	1	0	0	0	11129	478	17	4	684	4	OR4D2	17	56247698	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	15799903	56247698	24947512	305	72906										
ABCA8	0	genome.wustl.edu	37	chr17	66924181	66924181	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgaggaaatgcattagaattCaaatcatagtccaagtgtaa	8	5	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	66924181	66924181	C	G	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.1149	p.L383F	0.998	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	66	0	0	52	19	26.76	-	-	-	G	66924181	C	G	66924181	3	3	895	1	0	0	0	0	1	0	0	0	38	825	29	2	3716	2	ABCA8	17	66924181	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10676483	66924181	14271029	306	72907										
RECQL5	0	genome.wustl.edu	37	chr17	73647280	73647280	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acttaccccagttcttcacaGaaggtcaccagggcatcaaa	7	13	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	73647280	73647280	G	T	SNP	RECQL5	ENST00000317905	human	ensembl	69_37n	-1	known	missense	c.1215	p.F405L	1.000	tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	158	0	0	141	31	18.02	-	-	-	T	73647280	G	T	73647280	3	4	895	1	0	0	0	0	1	0	0	0	13286	933	33	2	1899	2	RECQL5	17	73647280	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	6723099	73647280	7547930	307	72908										
FBF1	0	genome.wustl.edu	37	chr17	73910890	73910890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctgcaatgcccgctcggcctCgcgctcggcccgctccttac	10	20	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	73910890	73910890	C	T	SNP	FBF1	ENST00000389570	human	ensembl	69_37n	-1	known	missense	c.2710	p.E904K	0.922	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878	11	0	0	10	9	47.37	-	-	-	T	73910890	C	T	73910890	3	4	895	1	0	0	0	0	1	0	0	0	5741	893	31	1	718	1	FBF1	17	73910890	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	263610	73910890	7284320	308	72909										
EVPL	0	genome.wustl.edu	37	chr17	74013937	74013937	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aggtctccatccagccgggtCatctgtgtcaggagcttctg	12	12	5	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	74013937	74013937	C	T	SNP	EVPL	ENST00000301607	human	ensembl	69_37n	-1	known	missense	c.1593	p.M531I	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin/RR-like,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	38	0	0	13	14	51.85	-	-	-	T	74013937	C	T	74013937	3	4	895	1	0	0	0	0	1	0	0	0	5329	826	29	2	4544	2	EVPL	17	74013937	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	103047	74013937	7181273	309	72910										
ENPP7	0	genome.wustl.edu	37	chr17	77710899	77710899	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacaacaaggacatggacatGaagaccatcttccgcgctgt	10	11	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	77710899	77710899	G	A	SNP	ENPP7	ENST00000328313	human	ensembl	69_37n	1	known	missense	c.1086	p.M362I	1.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156	35	0	0	24	27	52.94	-	-	-	A	77710899	G	A	77710899	3	1	895	1	0	0	0	0	1	0	0	0	5172	1290	45	2	1100	2	ENPP7	17	77710899	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	3696962	77710899	3484311	310	72911										
EIF4A3	0	genome.wustl.edu	37	chr17	78110058	78110058	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caattctctgttattagggaGatcatagttaatgatgaggg	11	4	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	78110058	78110058	G	A	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.1060	p.L354F	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	103	0	0	116	20	14.71	-	-	-	A	78110058	G	A	78110058	3	1	895	1	0	0	0	0	1	0	0	0	5063	942	33	2	187	2	EIF4A3	17	78110058	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	399159	78110058	3085152	311	72912										
B3GNTL1	0	genome.wustl.edu	37	chr17	80915078	80915078	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgagagtcctcgtggcaataGaagcctttcctgatcttgtt	10	9	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	17	80915078	80915078	G	A	SNP	B3GNTL1	ENST00000320865	human	ensembl	69_37n	-1	known	silent	c.909	p.F303	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	B3GNTL1	HGNC	ENSG00000175711	81	0	0	117	28	19.31	-	-	-	A	80915078	G	A	80915078	2	1	895	1	0	0	0	0	0	0	0	1	1269	933	33	2		2	B3GNTL1	17	80915078	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2805020	80915078	280132	312	72913										
L3MBTL4	0	genome.wustl.edu	37	chr18	5969468	5969468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gcaacttgcagtgttgctccCtgccgaggggaaggtcccga	14	12	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	5969468	5969468	C	T	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	missense	c.1565	p.R522K	0.992	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	17	0	0	15	8	34.78	-	-	-	T	5969468	C	T	5969468	3	4	895	1	0	0	0	0	1	0	0	0	8648	681	24	4	318	4	L3MBTL4	18	5969468	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		5969468	72107780	313	72914										
PTPRM	0	genome.wustl.edu	37	chr18	8244068	8244068	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atcctaaggaaactggccaaGaagcggaaagagaccatgag	12	8	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	8244068	8244068	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	silent	c.2313	p.K771	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	50	0	0	34	14	29.17	-	-	-	A	8244068	G	A	8244068	2	1	895	1	0	0	0	0	0	0	0	1	12889	933	33	2		2	PTPRM	18	8244068	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2274600	8244068	69833180	314	72915										
RBBP8	0	genome.wustl.edu	37	chr18	20573141	20573141	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	catccaaaaggaagaaaactGaggaagaaagtgaacatgaa	10	5	0	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	20573141	20573141	G	A	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	missense	c.1351	p.E451K	0.996	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	69	0	0	20	11	35.48	-	-	-	A	20573141	G	A	20573141	3	1	895	1	0	0	0	0	1	0	0	0	13188	1291	45	2	1389	2	RBBP8	18	20573141	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	12329073	20573141	57504107	315	72916										
ZNF397	0	genome.wustl.edu	37	chr18	32825765	32825765	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atcggaaaatccatactggtGagaaagcttgtaaatgtaat	9	5	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	32825765	32825765	G	A	SNP	ZNF397	ENST00000330501	human	ensembl	69_37n	1	known	missense	c.1096	p.E366K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	51	0	0	58	23	28.4	-	-	-	A	32825765	G	A	32825765	3	1	895	1	0	0	0	0	1	0	0	0	17979	1291	45	2	1106	2	ZNF397	18	32825765	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	12252624	32825765	45251483	316	72917										
FHOD3	0	genome.wustl.edu	37	chr18	34326920	34326920	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	attttcaggttgactttgatCaacttcaggataatttatgt	7	5	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	34326920	34326920	C	G	SNP	FHOD3	ENST00000592930	human	ensembl	69_37n	1	putative	nonsense	c.2810	p.S937*	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FHOD3	HGNC	ENSG00000134775	65	0	0	32	24	42.86	-	-	-	G	34326920	C	G	34326920	4	3	895	1	0	0	0	0	0	1	0	0	5929	827	29	2	3611	2	FHOD3	18	34326920	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1501155	34326920	43750328	317	72918										
KIAA1468	0	genome.wustl.edu	37	chr18	59895760	59895760	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccccaaattcattccccagGagagaaagagaaggaatgcc	9	11	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	59895760	59895760	G	A	SNP	KIAA1468	ENST00000256858	human	ensembl	69_37n	1	known	silent	c.1377	p.R459	0.339	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444	95	0	0	37	16	30.19	-	-	-	A	59895760	G	A	59895760	2	1	895	1	0	0	0	0	0	0	0	1	8288	1165	41	2		2	KIAA1468	18	59895760	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	25568840	59895760	18181488	318	72919										
SERPINB11	0	genome.wustl.edu	37	chr18	61387387	61387387	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaagtccttttcagctaagtGaggtaagtattttattttca	7	5	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	61387387	61387387	G	A	SNP	SERPINB11	ENST00000536691	human	ensembl	69_37n	1	known	missense	c.91	p.E31K	0.918	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB11	HGNC	ENSG00000206072	67	0	0	21	18	46.15	-	-	-	A	61387387	G	A	61387387	3	1	895	1	0	0	0	0	1	0	0	0	14186	1291	45	2	634	2	SERPINB11	18	61387387	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1491627	61387387	16689861	319	72920										
MBP	0	genome.wustl.edu	37	chr18	74696844	74696844	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaatcctggtctctggccttCggccccctgcaagagaagac	10	14	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	18	74696844	74696844	C	T	SNP	MBP	ENST00000355994	human	ensembl	69_37n	-1	known	missense	c.757	p.E253K	1.000	pfam_Myelin_BP	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971	41	0	0	34	14	29.17	-	-	-	T	74696844	C	T	74696844	3	4	895	1	0	0	0	0	1	0	0	0	9430	893	31	1	165	1	MBP	18	74696844	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	13309457	74696844	3380404	320	72921										
CIRBP	0	genome.wustl.edu	37	chr19	1271007	1271007	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagcagtcgctggagcaggtCttctcaaagtacggacagat	13	9	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	1271007	1271007	C	G	SNP	CIRBP	ENST00000444172	human	ensembl	69_37n	1	known	missense	c.23	p.S8C	0.996	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622	110	0	0	79	22	21.78	-	-	-	G	1271007	C	G	1271007	3	3	895	1	0	0	0	0	1	0	0	0	3462	900	32	2	77	2	CIRBP	19	1271007	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		1271007	57857976	321	72922										
MUM1	0	genome.wustl.edu	37	chr19	1367172	1367172	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cttcaagtttcacagtgtctCttaaaagtttaaagcacttt	5	8	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	1367172	1367172	C	T	SNP	MUM1	ENST00000344663	human	ensembl	69_37n	1	known	missense	c.1378	p.L460F	0.925	NULL	pfam_PWWP	-	no_errors	MUM1	HGNC	ENSG00000160953	208	0	0	187	89	32.25	-	-	-	T	1367172	C	T	1367172	3	4	895	1	0	0	0	0	1	0	0	0	10057	913	32	2	1408	2	MUM1	19	1367172	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	96165	1367172	57761811	322	72923										
GAMT	0	genome.wustl.edu	37	chr19	1398963	1398963	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttggacttcatcagctccccCcaggaggtgaggttgcagta	12	11	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	1398963	1398963	C	A	SNP	GAMT	ENST00000447102	human	ensembl	69_37n	-1	known	missense	c.522	p.W174C	1.000	NULL	NULL	-	no_errors	GAMT	HGNC	ENSG00000130005	47	0	0	27	7	20.59	-	-	-	A	1398963	C	A	1398963	3	1	895	1	0	0	0	0	1	0	0	0	6281	624	22	4	436	4	GAMT	19	1398963	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	31791	1398963	57730020	323	72924										
TIMM13	0	genome.wustl.edu	37	chr19	2426965	2426965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtcacatgttggctcgttccCgctgcagccgcgagttgtag	13	12	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	2426965	2426965	C	A	SNP	TIMM13	ENST00000215570	human	ensembl	69_37n	-1	known	missense	c.269	p.R90L	1.000	superfamily_Tim8/9/10/13_Znf-like	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM13	HGNC	ENSG00000099800	13	0	0	6	5	45.45	-	-	-	A	2426965	C	A	2426965	3	1	895	1	0	0	0	0	1	0	0	0	16001	652	23	3	22	3	TIMM13	19	2426965	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1028002	2426965	56702018	324	72925										
TJP3	0	genome.wustl.edu	37	chr19	3747917	3747917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacggcgagggcggcgcgtaCacggatggcgagggctacac	19	11	0	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	3747917	3747917	C	T	SNP	TJP3	ENST00000262968	human	ensembl	69_37n	1	known	silent	c.2547	p.Y849	1.000	NULL	pfam_PDZ,pfam_SH3_2,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	13	0	0	6	4	40	-	-	-	T	3747917	C	T	3747917	2	4	895	1	0	0	0	0	0	0	0	1	16026	489	17	4		4	TJP3	19	3747917	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1320952	3747917	55381066	325	72926										
VAV1	0	genome.wustl.edu	37	chr19	6826674	6826674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtggagtcagccagcaaacaCctggaccgtgtggccgcagc	14	13	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	6826674	6826674	C	G	SNP	VAV1	ENST00000304076	human	ensembl	69_37n	1	known	missense	c.879	p.H293Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	60	0	0	32	19	37.25	-	-	-	G	6826674	C	G	6826674	3	3	895	1	0	0	0	0	1	0	0	0	17228	506	18	4	913	4	VAV1	19	6826674	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3078757	6826674	52302309	326	72927										
MUC16	0	genome.wustl.edu	37	chr19	9057612	9057612	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttgattctgacatcatggatGaggaagagagcctggtgatc	13	6	2	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	9057612	9057612	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.29834	p.S9945L	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	88	0	0	94	27	22.31	-	-	-	A	9057612	G	A	9057612	3	1	895	1	0	0	0	0	1	0	0	0	10045	1294	45	2	14017	2	MUC16	19	9057612	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2230938	9057612	50071371	327	72928										
MUC16	0	genome.wustl.edu	37	chr19	9087590	9087590	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcctggagctgactgtgtctCaaatccagatgatttttctg	9	9	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	9087590	9087590	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.4225	p.E1409Q	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	125	0	0	117	39	25	-	-	-	G	9087590	C	G	9087590	3	3	895	1	0	0	0	0	1	0	0	0	10045	835	29	2	39634	2	MUC16	19	9087590	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	29978	9087590	50041393	328	72929										
ICAM1	0	genome.wustl.edu	37	chr19	10394426	10394426	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cccaagggctggagctgtttGagaacacctcggccccctac	11	15	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	10394426	10394426	G	C	SNP	ICAM1	ENST00000264832	human	ensembl	69_37n	1	known	missense	c.601	p.E201Q	0.001	prints_ICAM	pfam_ICAM_N,smart_Ig_sub,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM1	HGNC	ENSG00000090339	17	0	0	6	7	53.85	-	-	-	C	10394426	G	C	10394426	3	2	895	1	0	0	0	0	1	0	0	0	7533	1291	45	2	611	2	ICAM1	19	10394426	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1306836	10394426	48734557	329	72930										
KEAP1	0	genome.wustl.edu	37	chr19	10600510	10600510	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggggccaccaagtgccactCatcccgctctggctcatacc	9	17	3	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	10600510	10600510	C	A	SNP	KEAP1	ENST00000171111	human	ensembl	69_37n	-1	known	nonsense	c.1345	p.E449*	0.990	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	34	0	0	29	5	14.71	-	-	-	A	10600510	C	A	10600510	4	1	895	1	0	0	0	0	0	1	0	0	8194	835	29	2	541	2	KEAP1	19	10600510	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	206084	10600510	48528473	330	72931										
DOCK6	0	genome.wustl.edu	37	chr19	11361688	11361688	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagtcagctgccaggttcctCaggtcgaagatgctagaggc	14	10	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	11361688	11361688	C	G	SNP	DOCK6	ENST00000294618	human	ensembl	69_37n	-1	known	silent	c.582	p.L194	1.000	NULL	pfam_DOCK,pfam_DUF3398	-	no_errors	DOCK6	HGNC	ENSG00000130158	19	0	0	10	9	47.37	-	-	-	G	11361688	C	G	11361688	2	3	895	1	0	0	0	0	0	0	0	1	4726	813	29	2		2	DOCK6	19	11361688	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	761178	11361688	47767295	331	72932										
ZNF20	0	genome.wustl.edu	37	chr19	12243957	12243957	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgaaggtccgaggtacatctGaaggctttaccacattgcct	10	10	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	12243957	12243957	G	A	SNP	ZNF20	ENST00000334213	human	ensembl	69_37n	-1	known	silent	c.1044	p.F348	0.514	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	53	0	0	94	49	34.27	-	-	-	A	12243957	G	A	12243957	2	1	895	1	0	0	0	0	0	0	0	1	17857	1281	45	2		2	ZNF20	19	12243957	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	882269	12243957	46885026	332	72933										
ZNF20	0	genome.wustl.edu	37	chr19	12244352	12244352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	accagtgtgaattcgttcatGgataagacataaattgagaa	9	5	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	12244352	12244352	G	C	SNP	ZNF20	ENST00000334213	human	ensembl	69_37n	-1	known	missense	c.649	p.H217D	0.475	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	68	0	0	69	37	34.91	-	-	-	C	12244352	G	C	12244352	3	2	895	1	0	0	0	0	1	0	0	0	17857	1348	47	4	953	4	ZNF20	19	12244352	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	395	12244352	46884631	333	72934										
MED26	0	genome.wustl.edu	37	chr19	16687047	16687047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cgtgggcgggctttgaggcaCcagcacatgcagctgcctgg	16	12	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	16687047	16687047	C	G	SNP	MED26	ENST00000263390	human	ensembl	69_37n	-1	known	missense	c.1594	p.V532L	0.856	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085	33	0	0	5	4	44.44	-	-	-	G	16687047	C	G	16687047	3	3	895	1	0	0	0	0	1	0	0	0	9515	507	18	4	212	4	MED26	19	16687047	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	4442695	16687047	42441936	334	72935										
FCGBP	0	genome.wustl.edu	37	chr19	40367774	40367774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acagcggtcagcacttaacaCgaaacccgcgtcgcactggc	10	15	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	40367774	40367774	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.13186	p.V4396M	1.000	pfam_TIL_dom,superfamily_TIL_dom,smart_EGF-like	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	20	0	0	8	16	66.67	-	-	-	T	40367774	C	T	40367774	3	4	895	1	0	0	0	0	1	0	0	0	5824	536	19	1	3063	1	FCGBP	19	40367774	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	23680727	40367774	18761209	335	72936										
FCGBP	0	genome.wustl.edu	37	chr19	40433879	40433879	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggatgggccgcagcagtgtCagctccgctgtgtcaggctt	15	11	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	40433879	40433879	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.390	p.L130	0.860	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	53	0	0	41	18	30.51	-	-	-	T	40433879	C	T	40433879	2	4	895	1	0	0	0	0	0	0	0	1	5824	813	29	2		2	FCGBP	19	40433879	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	66105	40433879	18695104	336	72937										
RELB	0	genome.wustl.edu	37	chr19	45528975	45528975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ccggatggatcctgtgctttCcgagcccgtctatgacaaga	11	12	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	45528975	45528975	C	T	SNP	RELB	ENST00000221452	human	ensembl	69_37n	1	known	missense	c.866	p.S289F	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NF_Rel_dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NF_Rel_dor	-	no_errors	RELB	HGNC	ENSG00000104856	68	0	0	60	25	29.41	-	-	-	T	45528975	C	T	45528975	3	4	895	1	0	0	0	0	1	0	0	0	13300	855	30	2	884	2	RELB	19	45528975	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	5095096	45528975	13600008	337	72938										
AP2A1	0	genome.wustl.edu	37	chr19	50303369	50303369	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacagatcgtcaccaaccgtGatgacgtccagggctatgcc	10	13	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	50303369	50303369	G	A	SNP	AP2A1	ENST00000359032	human	ensembl	69_37n	1	known	missense	c.1417	p.D473N	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	33	0	0	40	22	35.48	-	-	-	A	50303369	G	A	50303369	3	1	895	1	0	0	0	0	1	0	0	0	740	1290	45	2	1459	2	AP2A1	19	50303369	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4774394	50303369	8825614	338	72939										
KLK14	0	genome.wustl.edu	37	chr19	51581409	51581409	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgcacaccaggggtcccccaGagtcaccctgagggggagga	15	13	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	51581409	51581409	G	C	SNP	KLK14	ENST00000156499	human	ensembl	69_37n	-1	known	missense	c.659	p.S220C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	KLK14	HGNC	ENSG00000129437	30	0	0	9	8	47.06	-	-	-	C	51581409	G	C	51581409	3	2	895	1	0	0	0	0	1	0	0	0	8455	942	33	2	148	2	KLK14	19	51581409	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1278040	51581409	7547574	339	72940										
ZNF836	0	genome.wustl.edu	37	chr19	52660057	52660057	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctctccagtgtgacttctCcggtgatttacaagatctga	8	10	3	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	52660057	52660057	C	G	SNP	ZNF836	ENST00000322146	human	ensembl	69_37n	-1	known	silent	c.879	p.R293	0.234	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267	105	0	0	83	36	30.25	-	-	-	G	52660057	C	G	52660057	2	3	895	1	0	0	0	0	0	0	0	1	18280	842	30	2		2	ZNF836	19	52660057	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1078648	52660057	6468926	340	72941										
ZNF347	0	genome.wustl.edu	37	chr19	53643693	53643693	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaacagatactaaagggtttCccacactcatatggtttctc	7	10	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	53643693	53643693	C	T	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	silent	c.2391	p.G797	0.136	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	131	1	0.76	115	42	26.75	-	-	-	T	53643693	C	T	53643693	2	4	895	1	0	0	0	0	0	0	0	1	17957	842	30	2		2	ZNF347	19	53643693	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	983636	53643693	5485290	341	72942										
MBOAT7	0	genome.wustl.edu	37	chr19	54677852	54677852	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cccagggctgccagggccagGaagtggatacagaagtagat	15	9	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	54677852	54677852	G	A	SNP	MBOAT7	ENST00000245615	human	ensembl	69_37n	-1	known	silent	c.1305	p.F435	0.011	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505	36	0	0	22	5	18.52	-	-	-	A	54677852	G	A	54677852	2	1	895	1	0	0	0	0	0	0	0	1	9429	1165	41	2		2	MBOAT7	19	54677852	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1034159	54677852	4451131	342	72943										
NLRP2	0	genome.wustl.edu	37	chr19	55502000	55502000	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caggggtgaagtttctgtgtGagggcttgaggtaccccgag	17	7	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	55502000	55502000	G	C	SNP	NLRP2	ENST00000448584	human	ensembl	69_37n	1	known	missense	c.2668	p.E890Q	0.790	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	169	0	0	129	45	25.86	-	-	-	C	55502000	G	C	55502000	3	2	895	1	0	0	0	0	1	0	0	0	10549	1291	45	2	2702	2	NLRP2	19	55502000	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	824148	55502000	3626983	343	72944										
EPN1	0	genome.wustl.edu	37	chr19	56189070	56189070	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tccttgggacgtctggtcttCtggcttccccggttcttcct	10	14	4	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	56189070	56189070	C	G	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	1	known	missense	c.202	p.L68V	0.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	104	0	0	84	35	29.41	-	-	-	G	56189070	C	G	56189070	3	3	895	1	0	0	0	0	1	0	0	0	5222	912	32	2	208	2	EPN1	19	56189070	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	687070	56189070	2939913	344	72945										
ZNF329	0	genome.wustl.edu	37	chr19	58639869	58639869	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttctcaccggtgtggattctGagatgcactgtaaggtggga	14	7	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	19	58639869	58639869	G	A	SNP	ZNF329	ENST00000358067	human	ensembl	69_37n	-1	known	silent	c.1002	p.L334	0.968	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894	112	0	0	77	40	34.19	-	-	-	A	58639869	G	A	58639869	2	1	895	1	0	0	0	0	0	0	0	1	17943	1277	45	2		2	ZNF329	19	58639869	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2450799	58639869	489114	345	72946										
HAO1	0	genome.wustl.edu	37	chr20	7866374	7866374	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tggaaagctaagccccaaacGattggtctccccacaaacac	7	14	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	7866374	7866374	G	C	SNP	HAO1	ENST00000378789	human	ensembl	69_37n	-1	known	missense	c.951	p.I317M	0.995	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323	69	0	0	61	17	21.79	-	-	-	C	7866374	G	C	7866374	3	2	895	1	0	0	0	0	1	0	0	0	7002	1048	37	3	173	3	HAO1	20	7866374	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		7866374	55159146	346	72947										
XKR7	0	genome.wustl.edu	37	chr20	30556266	30556266	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttcagcctcaccttgctgttCgtgctcctgccctcgctggt	9	16	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	30556266	30556266	C	T	SNP	XKR7	ENST00000217299	human	ensembl	69_37n	1	known	silent	c.288	p.F96	0.998	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000101321	20	0	0	21	13	38.24	-	-	-	T	30556266	C	T	30556266	2	4	895	1	0	0	0	0	0	0	0	1	17533	883	31	1		1	XKR7	20	30556266	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	22689892	30556266	32469254	347	72948										
DSN1	0	genome.wustl.edu	37	chr20	35381196	35381196	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaaactctcataaagtcactGacaagatccagatccagatc	6	11	2	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	35381196	35381196	G	A	SNP	DSN1	ENST00000373745	human	ensembl	69_37n	-1	known	nonsense	c.1066	p.Q356*	0.532	NULL	pfam_Mtw1_DSN1	-	no_errors	DSN1	HGNC	ENSG00000149636	97	0	0	114	46	28.75	-	-	-	A	35381196	G	A	35381196	4	1	895	1	0	0	0	0	0	1	0	0	4815	1299	45	2	8	2	DSN1	20	35381196	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4824930	35381196	27644324	348	72949										
ARFGEF2	0	genome.wustl.edu	37	chr20	47621682	47621682	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aactctccatgaagtttcttGagaagggtgaattagccaac	9	8	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	47621682	47621682	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	1	known	missense	c.3508	p.E1170K	1.000	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	123	0	0	96	30	23.81	-	-	-	A	47621682	G	A	47621682	3	1	895	1	0	0	0	0	1	0	0	0	855	1291	45	2	3610	2	ARFGEF2	20	47621682	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	12240486	47621682	15403838	349	72950										
PTGIS	0	genome.wustl.edu	37	chr20	48164524	48164524	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tcgtaggagtgtgggtccagGagaacggtgacatacctgcc	15	9	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	48164524	48164524	G	A	SNP	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	silent	c.231	p.L77	0.998	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	30	0	0	48	11	18.64	-	-	-	A	48164524	G	A	48164524	2	1	895	1	0	0	0	0	0	0	0	1	12833	1161	41	2		2	PTGIS	20	48164524	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	542842	48164524	14860996	350	72951										
B4GALT5	0	genome.wustl.edu	37	chr20	48256231	48256231	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtacctgttccagaggtcgtCatcttctccaccccaacccc	6	18	3	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	48256231	48256231	C	G	SNP	B4GALT5	ENST00000371711	human	ensembl	69_37n	-1	known	missense	c.901	p.D301H	1.000	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT5	HGNC	ENSG00000158470	61	0	0	84	21	20	-	-	-	G	48256231	C	G	48256231	3	3	895	1	0	0	0	0	1	0	0	0	1278	826	29	2	277	2	B4GALT5	20	48256231	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	91707	48256231	14769289	351	72952										
ADNP	0	genome.wustl.edu	37	chr20	49510991	49510991	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggaaatgacttttgtaggcaGagaagaattttgaggaaaat	12	2	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	49510991	49510991	G	C	SNP	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	missense	c.260	p.S87C	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	55	0	0	44	15	25.42	-	-	-	C	49510991	G	C	49510991	3	2	895	1	0	0	0	0	1	0	0	0	323	942	33	2	3052	2	ADNP	20	49510991	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1254760	49510991	13514529	352	72953										
SALL4	0	genome.wustl.edu	37	chr20	50407290	50407290	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	atgcatcttgagggagctctGacagcttaagactcggtggc	13	9	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	50407290	50407290	G	C	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	missense	c.1732	p.Q578E	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	74	0	0	103	19	15.57	-	-	-	C	50407290	G	C	50407290	3	2	895	1	0	0	0	0	1	0	0	0	13899	1299	45	2	1441	2	SALL4	20	50407290	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	896299	50407290	12618230	353	72954										
CTSZ	0	genome.wustl.edu	37	chr20	57571764	57571764	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgatgccccacccagccacaGaaacgacatggtttatatat	7	12	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	57571764	57571764	G	A	SNP	CTSZ	ENST00000217131	human	ensembl	69_37n	-1	known	missense	c.731	p.S244F	0.942	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSZ	HGNC	ENSG00000101160	84	0	0	67	25	27.17	-	-	-	A	57571764	G	A	57571764	3	1	895	1	0	0	0	0	1	0	0	0	4075	942	33	2	188	2	CTSZ	20	57571764	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	7164474	57571764	5453756	354	72955										
SYCP2	0	genome.wustl.edu	37	chr20	58460989	58460989	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	taaataacacctaccttactGagttgtacaacaggtttgtt	6	8	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	58460989	58460989	G	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	silent	c.2523	p.L841	0.004	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	105	0	0	68	15	18.07	-	-	-	A	58460989	G	A	58460989	2	1	895	1	0	0	0	0	0	0	0	1	15524	1277	45	2		2	SYCP2	20	58460989	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	889225	58460989	4564531	355	72956										
SYCP2	0	genome.wustl.edu	37	chr20	58470578	58470578	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cactctattttctgatgtttGagaaacactaggtttctctg	7	8	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	20	58470578	58470578	G	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	nonsense	c.1579	p.Q527*	0.026	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	176	0	0	163	76	31.8	-	-	-	A	58470578	G	A	58470578	4	1	895	1	0	0	0	0	0	1	0	0	15524	1299	45	2	3117	2	SYCP2	20	58470578	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	9589	58470578	4554942	356	72957										
DONSON	0	genome.wustl.edu	37	chr21	34951791	34951791	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gaatgcagagaatgaggcatGataggacctgtaatctccaa	11	7	1	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	21	34951791	34951791	G	C	SNP	DONSON	ENST00000437395	human	ensembl	69_37n	-1	novel	nonsense	c.1340	p.S447*	0.995	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DONSON	HGNC	ENSG00000159147	73	0	0	76	27	26.21	-	-	-	C	34951791	G	C	34951791	4	2	895	1	0	0	0	0	0	1	0	0	4741	1280	45	2	280	2	DONSON	21	34951791	Nonsense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09		34951791	13178104	357	72958										
ICOSLG	0	genome.wustl.edu	37	chr21	45656866	45656866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgacgttgaacaagcgcaggGagaagtcgccccgcagcatg	14	11	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	21	45656866	45656866	G	A	SNP	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	missense	c.290	p.S97F	0.985	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	67	0	0	70	26	27.08	-	-	-	A	45656866	G	A	45656866	3	1	895	1	0	0	0	0	1	0	0	0	7541	1174	41	2	638	2	ICOSLG	21	45656866	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10705075	45656866	2473029	358	72959										
KRTAP10-9	0	genome.wustl.edu	37	chr21	46047160	46047160	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caggtggacgactgcccagaGagctgctgtgagcccccctg	14	14	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	21	46047160	46047160	G	C	SNP	KRTAP10-9	ENST00000397911	human	ensembl	69_37n	1	known	missense	c.72	p.E24D	1.000	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	74	0	0	26	11	29.73	-	-	-	C	46047160	G	C	46047160	3	2	895	1	0	0	0	0	1	0	0	0	8569	933	33	2	74	2	KRTAP10-9	21	46047160	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	390294	46047160	2082735	359	72960										
COL6A2	0	genome.wustl.edu	37	chr21	47552403	47552403	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cgcgccgccgtgttccacgaGaaggactatgacagcctggc	13	14	0	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	21	47552403	47552403	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	silent	c.2997	p.E999	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	20	0	0	12	7	36.84	-	-	-	A	47552403	G	A	47552403	2	1	895	1	0	0	0	0	0	0	0	1	3730	933	33	2		2	COL6A2	21	47552403	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1505243	47552403	577492	360	72961										
TOP3B	0	genome.wustl.edu	37	chr22	22319685	22319685	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gagctggccacacgcagcatCtccacagtgttcagggccag	12	14	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	22319685	22319685	C	G	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	missense	c.915	p.E305D	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	66	0	0	47	21	30.88	-	-	-	G	22319685	C	G	22319685	3	3	895	1	0	0	0	0	1	0	0	0	16464	912	32	2	1713	2	TOP3B	22	22319685	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		22319685	28984881	361	72962										
RTDR1	0	genome.wustl.edu	37	chr22	23401817	23401817	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtaagggccttggtggcattCaggcgcgctatggtcatggg	17	8	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	23401817	23401817	C	A	SNP	RTDR1	ENST00000216036	human	ensembl	69_37n	-1	known	silent	c.870	p.L290	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218	26	0	0	14	8	36.36	-	-	-	A	23401817	C	A	23401817	2	1	895	1	0	0	0	0	0	0	0	1	13805	813	29	2		2	RTDR1	22	23401817	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1082132	23401817	27902749	362	72963										
SLC5A1	0	genome.wustl.edu	37	chr22	32506050	32506050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttttgtgggctagagcagcaCggtgcacccaagatgactga	13	9	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	32506050	32506050	C	T	SNP	SLC5A1	ENST00000266088	human	ensembl	69_37n	1	known	silent	c.1845	p.H615	0.831	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A1	HGNC	ENSG00000100170	142	0	0	126	50	28.41	-	-	-	T	32506050	C	T	32506050	2	4	895	1	0	0	0	0	0	0	0	1	14750	535	19	1		1	SLC5A1	22	32506050	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	9104233	32506050	18798516	363	72964										
RASD2	0	genome.wustl.edu	37	chr22	35943080	35943080	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gctcgacatcctggatacctCtggcaaccaccccttccccg	7	19	1	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	35943080	35943080	C	T	SNP	RASD2	ENST00000216127	human	ensembl	69_37n	1	known	missense	c.224	p.S75F	0.998	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302	34	0	0	29	15	34.09	-	-	-	T	35943080	C	T	35943080	3	4	895	1	0	0	0	0	1	0	0	0	13150	913	32	2	226	2	RASD2	22	35943080	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3437030	35943080	15361486	364	72965										
MYH9	0	genome.wustl.edu	37	chr22	36708234	36708234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tttggggaaccagcactcctCgtccagcagggccagaatgc	12	13	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	36708234	36708234	C	T	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.1588	p.E530K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	56	0	0	25	8	24.24	-	-	-	T	36708234	C	T	36708234	3	4	895	1	0	0	0	0	1	0	0	0	10114	893	31	1	4406	1	MYH9	22	36708234	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	765154	36708234	14596332	365	72966										
EIF3D	0	genome.wustl.edu	37	chr22	36907562	36907562	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctacacaccttcttcttcctCttcttcctcctcctcttcct	0	20	5	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	36907562	36907562	C	G	SNP	EIF3D	ENST00000216190	human	ensembl	69_37n	-1	known	missense	c.1621	p.E541Q	0.982	pirsf_EIF-3_zeta	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	-	no_errors	EIF3D	HGNC	ENSG00000100353	49	0	0	57	24	29.63	-	-	-	G	36907562	C	G	36907562	3	3	895	1	0	0	0	0	1	0	0	0	5051	922	32	2	33	2	EIF3D	22	36907562	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	199328	36907562	14397004	366	72967										
DDX17	0	genome.wustl.edu	37	chr22	38882173	38882173	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agtgccagcaccatattcttGagctgtatagctactggtgc	10	10	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	38882173	38882173	G	C	SNP	DDX17	ENST00000396821	human	ensembl	69_37n	-1	known	missense	c.1963	p.Q655E	0.790	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201	84	0	0	61	34	35.79	-	-	-	C	38882173	G	C	38882173	3	2	895	1	0	0	0	0	1	0	0	0	4375	1299	45	2	236	2	DDX17	22	38882173	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	1974611	38882173	12422393	367	72968										
TNRC6B	0	genome.wustl.edu	37	chr22	40662525	40662525	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aaacagcaattgggaaagttCtgcaagtaaacctgtgtctg	10	7	2	0			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	40662525	40662525	C	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.2291	p.S764C	0.996	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	76	0	0	13	10	43.48	-	-	-	G	40662525	C	G	40662525	3	3	895	1	0	0	0	0	1	0	0	0	16436	913	32	2	2430	2	TNRC6B	22	40662525	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1780352	40662525	10642041	368	72969										
EFCAB6	0	genome.wustl.edu	37	chr22	44178059	44178059	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tatttgctcatgaatacttaCttgaagaagatctgaactta	6	6	2	5			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	44178059	44178059	C	T	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	splice_site	c.139+1	e1+1	0.995	-	-	-	no_errors	EFCAB6	HGNC	ENSG00000186976	104	0	0	80	40	33.33	-	-	-	T	44178059	C	T	44178059	5	4	895	1	0	0	0	0	0	0	1	0	4974	579	20	4	4485	4	EFCAB6	22	44178059	Splice_Site	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3515534	44178059	7126507	369	72970										
LDOC1L	0	genome.wustl.edu	37	chr22	44892894	44892894	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgggcgcgccgcgcatgccgGagcggagacttgtaggttct	17	11	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	22	44892894	44892894	G	A	SNP	LDOC1L	ENST00000341255	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	0.000	NULL	NULL	-	no_errors	LDOC1L	HGNC	ENSG00000188636	32	0	0	15	8	34.78	-	-	-	A	44892894	G	A	44892894	2	1	895	1	0	0	0	0	0	0	0	1	8764	1161	41	2		2	LDOC1L	22	44892894	Silent	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	714835	44892894	6411672	370	72971										
MID1	0	genome.wustl.edu	37	chrX	10442697	10442697	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agacattctagcagtttcttCtctcgggaaaaatctaaggc	8	9	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	10442697	10442697	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	silent	c.1107	p.E369	1.000	superfamily_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	140	1	0.71	99	44	30.77	-	-	-	T	10442697	C	T	10442697	2	4	895	1	0	0	0	0	0	0	0	1	9647	912	32	2		2	MID1	23	10442697	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09		10442697	144827863	371	72972										
REPS2	0	genome.wustl.edu	37	chrX	17047736	17047736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gccccttcggcatcaggcttCccttatccgggtaagtgatg	11	13	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	17047736	17047736	C	T	SNP	REPS2	ENST00000357277	human	ensembl	69_37n	1	known	missense	c.761	p.S254F	0.678	NULL	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891	73	0	0	33	17	34	-	-	-	T	17047736	C	T	17047736	3	4	895	1	0	0	0	0	1	0	0	0	13312	855	30	2	779	2	REPS2	23	17047736	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	6605039	17047736	138222824	372	72973										
MAGEB1	0	genome.wustl.edu	37	chrX	30269445	30269445	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggggtccgagagcctatgctGaaaccaccaagatgaaagtc	12	10	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	30269445	30269445	G	A	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	1	known	missense	c.835	p.E279K	0.129	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	122	0	0	108	44	28.95	-	-	-	A	30269445	G	A	30269445	3	1	895	1	0	0	0	0	1	0	0	0	9243	1291	45	2	837	2	MAGEB1	23	30269445	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	13221709	30269445	125001115	373	72974										
USP9X	0	genome.wustl.edu	37	chrX	41056704	41056704	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	caaaggagttactggcctttCaaacttctgagaaaaaattt	7	7	2	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	41056704	41056704	C	T	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	nonsense	c.4321	p.Q1441*	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	116	0	0	75	19	20.21	-	-	-	T	41056704	C	T	41056704	4	4	895	1	0	0	0	0	0	1	0	0	17187	827	29	2	4431	2	USP9X	23	41056704	Nonsense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	10787259	41056704	114213856	374	72975										
CXorf36	0	genome.wustl.edu	37	chrX	45013388	45013388	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tgctggtgctgacgaggaatCtgccacaggagcccaggtac	14	11	1	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	45013388	45013388	C	T	SNP	CXorf36	ENST00000398000	human	ensembl	69_37n	-1	known	missense	c.728	p.R243K	0.950	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	12	0	0	11	7	38.89	-	-	-	T	45013388	C	T	45013388	3	4	895	1	0	0	0	0	1	0	0	0	4137	913	32	2	581	2	CXorf36	23	45013388	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	3956684	45013388	110257172	375	72976										
ZNF630	0	genome.wustl.edu	37	chrX	47918311	47918311	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gtttctcccctgtatgaattCtctggtgtatgataagaggt	10	7	2	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	47918311	47918311	C	T	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	missense	c.1520	p.R507K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	102	0	0	78	30	27.78	-	-	-	T	47918311	C	T	47918311	3	4	895	1	0	0	0	0	1	0	0	0	18150	913	32	2	457	2	ZNF630	23	47918311	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2904923	47918311	107352249	376	72977										
CACNA1F	0	genome.wustl.edu	37	chrX	49071937	49071937	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	acaatgaagaacactgagatCtccacacggtaattatagat	7	8	1	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	49071937	49071937	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	silent	c.3336	p.E1112	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	97	0	0	91	44	32.59	-	-	-	T	49071937	C	T	49071937	2	4	895	1	0	0	0	0	0	0	0	1	2568	912	32	2		2	CACNA1F	23	49071937	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1153626	49071937	106198623	377	72978										
NONO	0	genome.wustl.edu	37	chrX	70517738	70517738	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	agatgcggcggcagcaagaaGaaatgatgcggcgacagcag	16	8	0	4			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	70517738	70517738	G	A	SNP	NONO	ENST00000276079	human	ensembl	69_37n	1	known	missense	c.1081	p.E361K	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NONO	HGNC	ENSG00000147140	26	0	0	12	9	42.86	-	-	-	A	70517738	G	A	70517738	3	1	895	1	0	0	0	0	1	0	0	0	10606	943	33	2	1107	2	NONO	23	70517738	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	21445801	70517738	84752822	378	72979										
CHIC1	0	genome.wustl.edu	37	chrX	72783181	72783181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tctcggaactggaggaggagGaggaagaagaagcggcaacg	18	6	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	72783181	72783181	G	A	SNP	CHIC1	ENST00000373502	human	ensembl	69_37n	1	known	missense	c.61	p.E21K	1.000	NULL	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC1	HGNC	ENSG00000204116	11	0	0	12	5	27.78	-	-	-	A	72783181	G	A	72783181	3	1	895	1	0	0	0	0	1	0	0	0	3372	1175	41	2	63	2	CHIC1	23	72783181	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	2265443	72783181	82487379	379	72980										
GLA	0	genome.wustl.edu	37	chrX	100655659	100655659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ggctcactatctcaccttttGaaagggccacatataaagag	8	10	2	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	100655659	100655659	G	C	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.634	p.Q212E	0.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	86	0	0	67	23	25.56	-	-	-	C	100655659	G	C	100655659	3	2	895	1	0	0	0	0	1	0	0	0	6478	1299	45	2	671	2	GLA	23	100655659	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	27872478	100655659	54614901	380	72981										
GPRASP2	0	genome.wustl.edu	37	chrX	101972129	101972129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagagacaaatgataatattCaaattgttattaaaatgttt	5	2	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	101972129	101972129	C	G	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.2332	p.Q778E	0.996	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	65	0	0	24	8	24.24	-	-	-	G	101972129	C	G	101972129	3	3	895	1	0	0	0	0	1	0	0	0	6774	827	29	2	2334	2	GPRASP2	23	101972129	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1316470	101972129	53298431	381	72982										
AMOT	0	genome.wustl.edu	37	chrX	112058819	112058819	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ttgttggtggtgatggtgatGatggtgctgctgctgctgtt	17	4	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	112058819	112058819	G	C	SNP	AMOT	ENST00000371959	human	ensembl	69_37n	-1	known	missense	c.1159	p.H387D	0.212	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	46	0	0	63	27	30	-	-	-	C	112058819	G	C	112058819	3	2	895	1	0	0	0	0	1	0	0	0	582	1290	45	2	2135	2	AMOT	23	112058819	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10086690	112058819	43211741	382	72983										
PLS3	0	genome.wustl.edu	37	chrX	114868384	114868384	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	aagaagaaacttacacccttCatcattcaggtatgcattgt	6	9	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	114868384	114868384	C	T	SNP	PLS3	ENST00000355899	human	ensembl	69_37n	1	known	silent	c.573	p.F191	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS3	HGNC	ENSG00000102024	136	0	0	87	31	26.27	-	-	-	T	114868384	C	T	114868384	2	4	895	1	0	0	0	0	0	0	0	1	12182	825	29	2		2	PLS3	23	114868384	Silent	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	2809565	114868384	40402176	383	72984										
LAMP2	0	genome.wustl.edu	37	chrX	119589289	119589289	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	cgctgtcaattgaataagtaGatgctgccttggtaaaattc	9	7	1	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	119589289	119589289	G	A	SNP	LAMP2	ENST00000434600	human	ensembl	69_37n	-1	known	missense	c.320	p.S107F	0.036	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	148	0	0	88	47	34.56	-	-	-	A	119589289	G	A	119589289	3	1	895	1	0	0	0	0	1	0	0	0	8672	942	33	2	1231	2	LAMP2	23	119589289	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	4720905	119589289	35681271	384	72985										
MAGEC3	0	genome.wustl.edu	37	chrX	140953296	140953296	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ataaggactattctgcctttCatcttgggcatctgagggag	11	8	4	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	140953296	140953296	C	T	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	1	known	missense	c.163	p.H55Y	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	134	0	0	65	31	32.29	-	-	-	T	140953296	C	T	140953296	3	4	895	1	0	0	0	0	1	0	0	0	9253	826	29	2	169	2	MAGEC3	23	140953296	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	21364007	140953296	14317264	385	72986										
SLITRK4	0	genome.wustl.edu	37	chrX	142716423	142716423	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	tacatgacctagatcttgttCaaagctgtttgctcctcaag	7	10	3	2			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	142716423	142716423	C	G	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.2502	p.L834F	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	110	0	0	59	27	31.4	-	-	-	G	142716423	C	G	142716423	3	3	895	1	0	0	0	0	1	0	0	0	14834	825	29	2	15	2	SLITRK4	23	142716423	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1763127	142716423	12554137	386	72987										
ATP2B3	0	genome.wustl.edu	37	chrX	152845591	152845591	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	gacgacacggacgtggacgaGaacgaggagcgcctccgggc	17	12	0	1			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	152845591	152845591	G	C	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.3498	p.E1166D	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	24	0	0	16	4	20	-	-	-	C	152845591	G	C	152845591	3	2	895	1	0	0	0	0	1	0	0	0	1145	933	33	2	3734	2	ATP2B3	23	152845591	Missense_Mutation	SNP	G	TCGA-EW-A1J5-01A-11D-A13L-09	10129168	152845591	2424969	387	72988										
GAB3	0	genome.wustl.edu	37	chrX	153924289	153924289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.677835051546392	263	3.67156627453729e-107	4.10908774992161	4.29147989091251	3.99621727702141	9.76136184246947e-06	0.000565017679347056	199	ctggagagagaaagctggttCgactgctaagaataaaaata	11	5	0	3			TCGA-EW-A1J5-01A-11D-A13L-09	TCGA-EW-A1J5-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	98bb3025-0637-4106-8621-12df7b5d662f	d0c5457b-7ba5-4482-acc8-edc375e0e121	X	153924289	153924289	C	T	SNP	GAB3	ENST00000424127	human	ensembl	69_37n	-1	known	missense	c.1433	p.R478Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	75	0	0	41	21	33.87	-	-	-	T	153924289	C	T	153924289	3	4	895	1	0	0	0	0	1	0	0	0	6199	884	31	1	342	1	GAB3	23	153924289	Missense_Mutation	SNP	C	TCGA-EW-A1J5-01A-11D-A13L-09	1078698	153924289	1346271	388	72989										
FLG	0	genome.wustl.edu	37	chr1	152284604	152284604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tgagtgtctagagatgtcggCatgagaggaagcttcatggt	15	5	2	3			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	152284604	152284604	C	A	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.2758	p.A920S	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	302	0	0	294	196	39.84	-	-	-	A	152284604	C	A	152284604	3	1	896	1	0	0	0	0	1	0	0	0	5968	710	25	4	9431	4	FLG	1	152284604	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09		152284604	96966017	1	72990										
KCNN3	0	genome.wustl.edu	37	chr1	154842243	154842243	+	Silent	SNP	A	A	C													0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tgctgctgctgctgctgctgAagctgcggaggctgaggctg							TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	21	0	0	56	27	32.53	-	-	-	C	154842243	A	C	154842243	2	2	896	1	0	0	0	0	0	0	0	1	8134	233	9	5		5	KCNN3	1	154842243	Silent	SNP	A	TCGA-EW-A1J6-01A-11D-A188-09	2557639	154842243	94408378	2	72991	513	2								
KCNN3	0	genome.wustl.edu	37	chr1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T													0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	gctgctgctgctgctgctgaAgctgcggaggctgaggctgc							TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	21	0	0	58	25	30.12	-	-	-	T	154842244	A	T	154842244	3	4	896	1	0	0	0	0	1	0	0	0	8134	72	3	5	2052	5	KCNN3	1	154842244	Missense_Mutation	SNP	A	TCGA-EW-A1J6-01A-11D-A188-09	1	154842244	94408377	3	72992	513	2								
TNR	0	genome.wustl.edu	37	chr1	175372511	175372511	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tcttcacagacacactccccGtccacgcagagcccccggga	8	19	2	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	175372511	175372511	G	A	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	silent	c.741	p.D247	1.000	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	45	0	0	16	33	67.35	-	-	-	A	175372511	G	A	175372511	2	1	896	1	0	0	0	0	0	0	0	1	16433	1136	40	1		1	TNR	1	175372511	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	20530267	175372511	73878110	4	72993										
LRRTM1	0	genome.wustl.edu	37	chr2	80530639	80530639	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	aaggcgtccccctgcacggaGcagatgtgattgtgatccag	13	11	0	3			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	2	80530639	80530639	G	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	nonsense	c.306	p.C102*	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	73	0	0	22	38	63.33	-	-	-	T	80530639	G	T	80530639	4	4	896	1	0	0	0	0	0	1	0	0	9105	963	34	4	1266	4	LRRTM1	2	80530639	Nonsense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		80530639	162668734	5	72994										
SERPINE2	0	genome.wustl.edu	37	chr2	224863029	224863031	+	In_Frame_Del	DEL	TTG	TTG	-													0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tcttcttggagacgatggccTtgttgatcttctttaatatt							TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	2	224863029	224863031	TTG	-	DEL	SERPINE2	ENST00000258405	human	ensembl	69_37n	-1	known	in_frame_del	c.290_288	p.N96in_frame_del	1.000:1.000:1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919	132	0	0	38	44	52.38	-	-	-	-	224863031	TTG	-	224863029	7	5	896	1	0	1	0	1	0	0	0	0	14200	1609	56	0	934	0	SERPINE2	2	224863029	In_Frame_Del	DEL	TTG	TCGA-EW-A1J6-01A-11D-A188-09	144332390	224863029	18336344	6	72995										
GTPBP8	0	genome.wustl.edu	37	chr3	112710242	112710242	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cacagcgctaaccgcttcccTggccgtccggctcgcgggtg	13	17	0	0			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	3	112710242	112710242	T	C	SNP	GTPBP8	ENST00000471627	human	ensembl	69_37n	1	known	silent	c.396	p.P132	0.000	NULL	NULL	-	no_errors	GTPBP8	HGNC	ENSG00000163607	8	0	0	2	6	75	-	-	-	C	112710242	T	C	112710242	2	2	896	1	0	0	0	0	0	0	0	1	6935	1595	55	5		5	GTPBP8	3	112710242	Silent	SNP	T	TCGA-EW-A1J6-01A-11D-A188-09		112710242	85312188	7	72996										
COL6A5	0	genome.wustl.edu	37	chr3	130202881	130202881	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tattgttatattttgcagatGgtgaagatacaaggtcatca	9	4	2	3			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	3	130202881	130202881	G	C	SNP	COL6A5	ENST00000432398	human	ensembl	69_37n	1	known	missense	c.7577	p.W2526S	0.181	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	82	0	0	59	37	38.54	-	-	-	C	130202881	G	C	130202881	3	2	896	1	0	0	0	0	1	0	0	0	3732	1357	47	4	7731	4	COL6A5	3	130202881	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	17492639	130202881	67819549	8	72997										
MUC20	0	genome.wustl.edu	37	chr3	195452005	195452005	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ggcctgtcctcagagagcagCgcctcttccgacagccccca	10	18	2	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	3	195452005	195452005	C	T	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	silent	c.531	p.S177	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	21	0	0	28	13	31.71	-	-	-	T	195452005	C	T	195452005	2	4	896	1	0	0	0	0	0	0	0	1	10048	767	27	1		1	MUC20	3	195452005	Silent	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09	65249124	195452005	2570425	9	72998										
KIAA0947	0	genome.wustl.edu	37	chr5	5457497	5457497	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	gtgcctggggaagatggtacGctacctccaacacagggcag	14	11	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	5457497	5457497	G	T	SNP	KIAA0947	ENST00000296564	human	ensembl	69_37n	1	known	silent	c.744	p.T248	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151	62	0	0	52	33	38.82	-	-	-	T	5457497	G	T	5457497	2	4	896	1	0	0	0	0	0	0	0	1	8254	1074	38	3		3	KIAA0947	5	5457497	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		5457497	175457763	10	72999										
SEMA5A	0	genome.wustl.edu	37	chr5	9108318	9108318	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cgagcttgaatgccacccccGcattgggctgtgcaccgttc	11	15	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	9108318	9108318	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	silent	c.2007	p.C669	0.092	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	52	0	0	44	29	39.73	-	-	-	A	9108318	G	A	9108318	2	1	896	1	0	0	0	0	0	0	0	1	14125	1079	38	1		1	SEMA5A	5	9108318	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	3650821	9108318	171806942	11	73000										
DPYSL3	0	genome.wustl.edu	37	chr5	146777319	146777319	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ccctgggtcacgtgcaggttGccatcttccagcatgatctt	10	13	3	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	146777319	146777319	G	T	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	silent	c.1371	p.G457	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	43	0	0	41	24	36.92	-	-	-	T	146777319	G	T	146777319	2	4	896	1	0	0	0	0	0	0	0	1	4783	1306	46	4		4	DPYSL3	5	146777319	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	137669001	146777319	34137941	12	73001										
MYO6	0	genome.wustl.edu	37	chr6	76540247	76540247	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ctcttgggacaagaccacctCatgtctttgcaattggtaag	9	10	3	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	6	76540247	76540247	C	T	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.376	p.H126Y	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	95	0	0	25	56	69.14	-	-	-	T	76540247	C	T	76540247	3	4	896	1	0	0	0	0	1	0	0	0	10153	826	29	2	390	2	MYO6	6	76540247	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09		76540247	94574820	13	73002										
WBSCR28	0	genome.wustl.edu	37	chr7	73279928	73279928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ccttgcaagtgaactgcgtgGtaaggaagctcctggtacag	13	9	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	73279928	73279928	G	T	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	missense	c.523	p.V175L	0.009	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	123	0	0	108	71	39.66	-	-	-	T	73279928	G	T	73279928	3	4	896	1	0	0	0	0	1	0	0	0	17364	1261	44	4	533	4	WBSCR28	7	73279928	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		73279928	85858735	14	73003										
PPP1R9A	0	genome.wustl.edu	37	chr7	94540068	94540068	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tatttgagaacactgattctCccagtgccatcatttctgag	7	10	3	3			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	94540068	94540068	C	A	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	missense	c.643	p.P215T	0.953	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	76	0	0	73	50	40.65	-	-	-	A	94540068	C	A	94540068	3	1	896	1	0	0	0	0	1	0	0	0	12455	855	30	2	645	2	PPP1R9A	7	94540068	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09	21260140	94540068	64598595	15	73004										
PLXNA4	0	genome.wustl.edu	37	chr7	131848966	131848966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	caaggagtagcgggcctcgcCcgtgatggcgtcaatggggc	17	11	1	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	131848966	131848966	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.4435	p.G1479S	0.997	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	101	0	0	72	44	37.93	-	-	-	T	131848966	C	T	131848966	3	4	896	1	0	0	0	0	1	0	0	0	12196	623	22	4	1285	4	PLXNA4	7	131848966	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09	37308898	131848966	27289697	16	73005										
FAM86B1	0	genome.wustl.edu	37	chr8	12043032	12043032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ggcttctgggcaatacagcaCgtctacggtgaaagtttcag	12	9	3	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	8	12043032	12043032	C	T	SNP	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	missense	c.745	p.V249M	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	13	0	0	10	7	41.18	-	-	-	T	12043032	C	T	12043032	3	4	896	1	0	0	0	0	1	0	0	0	5689	536	19	1	255	1	FAM86B1	8	12043032	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09		12043032	134320990	17	73006										
RB1CC1	0	genome.wustl.edu	37	chr8	53569852	53569852	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	attttactttttcaataatgTttcttatttctactgctgta	3	6	3	0			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	8	53569852	53569852	T	C	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.2537	p.N846S	0.995	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	81	0	0	61	32	34.41	-	-	-	C	53569852	T	C	53569852	3	2	896	1	0	0	0	0	1	0	0	0	13182	1725	60	5	2287	5	RB1CC1	8	53569852	Missense_Mutation	SNP	T	TCGA-EW-A1J6-01A-11D-A188-09	41526820	53569852	92794170	18	73007										
PIGO	0	genome.wustl.edu	37	chr9	35095509	35095509	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	gtgaagagggcaatgccagcGtagaagaggaagcagaccca	15	8	0	5			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	35095509	35095509	G	A	SNP	PIGO	ENST00000341666	human	ensembl	69_37n	-1	known	silent	c.54	p.Y18	0.099	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282	20	0	0	46	21	31.34	-	-	-	A	35095509	G	A	35095509	2	1	896	1	0	0	0	0	0	0	0	1	11968	1140	40	1		1	PIGO	9	35095509	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		35095509	106117922	19	73008										
ZBTB5	0	genome.wustl.edu	37	chr9	37441075	37441075	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tccttggtagcctgaagtctGcacacacggcaggcccatca	10	14	2	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	37441075	37441075	G	C	SNP	ZBTB5	ENST00000307750	human	ensembl	69_37n	-1	known	missense	c.1474	p.Q492E	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795	62	0	0	50	25	32.89	-	-	-	C	37441075	G	C	37441075	3	2	896	1	0	0	0	0	1	0	0	0	17647	1328	46	4	563	4	ZBTB5	9	37441075	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	2345566	37441075	103772356	20	73009										
HSDL2	0	genome.wustl.edu	37	chr9	115200812	115200812	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cagcatattccattttccaaAagccaaaaagttttactggc	5	10	0	0			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	115200812	115200812	A	T	SNP	HSDL2	ENST00000398805	human	ensembl	69_37n	1	known	nonsense	c.700	p.K234*	0.999	NULL	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	59	0	0	67	42	38.53	-	-	-	T	115200812	A	T	115200812	4	4	896	1	0	0	0	0	0	1	0	0	7445	15	1	5	726	5	HSDL2	9	115200812	Nonsense_Mutation	SNP	A	TCGA-EW-A1J6-01A-11D-A188-09	77759737	115200812	26012619	21	73010										
SNX30	0	genome.wustl.edu	37	chr9	115567232	115567232	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	atggagacttacatcacctaTaggatcaccaccaaagtagg	8	10	2	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	115567232	115567232	T	C	SNP	SNX30	ENST00000374232	human	ensembl	69_37n	1	known	silent	c.333	p.Y111	0.996	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX30	HGNC	ENSG00000148158	112	0	0	35	99	73.88	-	-	-	C	115567232	T	C	115567232	2	2	896	1	0	0	0	0	0	0	0	1	14989	1413	49	5		5	SNX30	9	115567232	Silent	SNP	T	TCGA-EW-A1J6-01A-11D-A188-09	366420	115567232	25646199	22	73011										
CUBN	0	genome.wustl.edu	37	chr10	16942845	16942845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	caatatcaaagtcactaaatGtgagctgcaggagaaaaaag	9	6	2	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	10	16942845	16942845	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.8189	p.T2730I	0.191	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	112	0	0	76	106	58.24	-	-	-	A	16942845	G	A	16942845	3	1	896	1	0	0	0	0	1	0	0	0	4082	1377	48	4	2742	4	CUBN	10	16942845	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		16942845	118591902	23	73012										
SLC16A9	0	genome.wustl.edu	37	chr10	61412689	61412689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	aatgcaatatcataggtctgGgtccagtcataaaaccaacc	7	10	3	0			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	10	61412689	61412689	G	A	SNP	SLC16A9	ENST00000395347	human	ensembl	69_37n	-1	known	silent	c.1371	p.T457	0.991	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449	64	0	0	18	24	57.14	-	-	-	A	61412689	G	A	61412689	2	1	896	1	0	0	0	0	0	0	0	1	14504	1219	43	4		4	SLC16A9	10	61412689	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	44469844	61412689	74122058	24	73013										
MUC5B	0	genome.wustl.edu	37	chr11	1265475	1265475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	actggatccacggccaccccGtcctccaccccagggaccac	8	21	0	0			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	1265475	1265475	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.7374	p.P2458	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	54	0	0	49	36	42.35	-	-	-	A	1265475	G	A	1265475	2	1	896	1	0	0	0	0	0	0	0	1	10051	1132	40	1		1	MUC5B	11	1265475	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		1265475	133741041	25	73014										
QSER1	0	genome.wustl.edu	37	chr11	32955077	32955078	+	Frame_Shift_Ins	INS	-	-	A													0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ggggttgctctgcaagcatcINSaaaaaaagaagaaagtgttg							TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	32955077	32955078	-	A	INS	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	frame_shift_ins	c.1886_1887	p.E632fs	0.958:0.967	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	38	0	0	29	18	38.3	-	-	-	A	32955078	-	A	32955077	7	5	896	1	0	1	1	0	0	0	0	0	12965	838	29	0	1892	0	QSER1	11	32955077	Frame_Shift_Ins	INS	-	TCGA-EW-A1J6-01A-11D-A188-09	31689602	32955077	102051439	26	73015										
ODZ4	0	genome.wustl.edu	37	chr11	78440581	78440581	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	atgaggttgaaggggatggtCgggtgggtgaggctgatcct	20	4	0	4			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	78440581	78440581	C	T	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	silent	c.3246	p.P1082	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	84	0	0	116	26	18.31	-	-	-	T	78440581	C	T	78440581	2	4	896	1	0	0	0	0	0	0	0	1	10910	871	31	1		1	ODZ4	11	78440581	Silent	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09	45485504	78440581	56565935	27	73016										
ATM	0	genome.wustl.edu	37	chr11	108218045	108218045	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tggtgatagacatgtacagaAtatcttgataaatgagcagt	10	4	1	5			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	108218045	108218045	A	G	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.8624	p.N2875S	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	113	0	0	21	39	65	-	-	-	G	108218045	A	G	108218045	3	3	896	1	0	0	0	0	1	0	0	0	1113	101	4	5	8854	5	ATM	11	108218045	Missense_Mutation	SNP	A	TCGA-EW-A1J6-01A-11D-A188-09	29777464	108218045	26788471	28	73017										
ADAMTS8	0	genome.wustl.edu	37	chr11	130286095	130286095	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	agctctgtgagatacatggcGctgcagggggaccagggcag	17	9	1	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	130286095	130286095	G	A	SNP	ADAMTS8	ENST00000257359	human	ensembl	69_37n	-1	known	silent	c.1227	p.S409	0.394	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917	26	0	0	43	15	25.86	-	-	-	A	130286095	G	A	130286095	2	1	896	1	0	0	0	0	0	0	0	1	272	1078	38	1		1	ADAMTS8	11	130286095	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	22068050	130286095	4720421	29	73018										
PLBD2	0	genome.wustl.edu	37	chr12	113825554	113825554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cttttccccatccaggtacaAtgacttcctccatgaccctc	4	17	0	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	12	113825554	113825554	A	G	SNP	PLBD2	ENST00000280800	human	ensembl	69_37n	1	known	missense	c.1445	p.N482S	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176	70	0	0	50	20	28.57	-	-	-	G	113825554	A	G	113825554	3	3	896	1	0	0	0	0	1	0	0	0	12100	101	4	5	1487	5	PLBD2	12	113825554	Missense_Mutation	SNP	A	TCGA-EW-A1J6-01A-11D-A188-09		113825554	20026341	30	73019										
NALCN	0	genome.wustl.edu	37	chr13	101936304	101936304	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ctggaggcaggctggggcgcGtccctggggcttgttgacat	18	10	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	13	101936304	101936304	G	C	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.1114	p.R372G	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	38	0	0	48	12	20	-	-	-	C	101936304	G	C	101936304	3	2	896	1	0	0	0	0	1	0	0	0	10220	1145	40	3	4242	3	NALCN	13	101936304	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		101936304	13233574	31	73020										
ITGBL1	0	genome.wustl.edu	37	chr13	102344973	102344973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	aatgcacctgctatcctccaGgagatcgccgggtgtatggc	12	12	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	13	102344973	102344973	G	A	SNP	ITGBL1	ENST00000376180	human	ensembl	69_37n	1	known	missense	c.1054	p.G352R	0.999	pfam_EGF_extracell	pfam_EGF_extracell,smart_EGF-like	-	no_errors	ITGBL1	HGNC	ENSG00000198542	100	0	0	86	64	42.38	-	-	-	A	102344973	G	A	102344973	3	1	896	1	0	0	0	0	1	0	0	0	7956	1001	35	4	1084	4	ITGBL1	13	102344973	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	408669	102344973	12824905	32	73021										
SSH2	0	genome.wustl.edu	37	chr17	28022486	28022486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cactaacttaccagcctgatGttgtcttctgggcggagtaa	10	10	2	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	28022486	28022486	G	A	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	silent	c.267	p.N89	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	115	0	0	72	27	27.27	-	-	-	A	28022486	G	A	28022486	2	1	896	1	0	0	0	0	0	0	0	1	15276	1368	48	4		4	SSH2	17	28022486	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		28022486	53172724	33	73022										
KRT34	0	genome.wustl.edu	37	chr17	39535625	39535625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	caggttgtgctgggcctgcaGctcgatctccagggcgttga	15	11	1	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	39535625	39535625	G	T	SNP	KRT34	ENST00000394001	human	ensembl	69_37n	-1	known	missense	c.982	p.L328M	1.000	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737	271	0	0	270	101	27.22	-	-	-	T	39535625	G	T	39535625	3	4	896	1	0	0	0	0	1	0	0	0	8524	962	34	4	340	4	KRT34	17	39535625	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	11513139	39535625	41659585	34	73023										
CD79B	0	genome.wustl.edu	37	chr17	62007651	62007651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cagagccagctcacattgccGgaggcgctgttcatgtagca	12	12	2	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	62007651	62007651	G	A	SNP	CD79B	ENST00000392795	human	ensembl	69_37n	-1	known	silent	c.216	p.S72	0.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like	-	no_errors	CD79B	HGNC	ENSG00000007312	113	0	0	75	39	34.21	-	-	-	A	62007651	G	A	62007651	2	1	896	1	0	0	0	0	0	0	0	1	3066	1103	39	1		1	CD79B	17	62007651	Silent	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	22472026	62007651	19187559	35	73024										
TTC39C	0	genome.wustl.edu	37	chr18	21698089	21698089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	taaaaatatttctttcatagGttggtgcagcatgatagagc	9	5	2	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	18	21698089	21698089	G	A	SNP	TTC39C	ENST00000317571	human	ensembl	69_37n	1	known	missense	c.1079	p.G360D	1.000	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	-	no_errors	TTC39C	HGNC	ENSG00000168234	101	0	0	85	36	29.75	-	-	-	A	21698089	G	A	21698089	3	1	896	1	0	0	0	0	1	0	0	0	16806	1275	44	4	1109	4	TTC39C	18	21698089	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09		21698089	56379159	36	73025										
DCC	0	genome.wustl.edu	37	chr18	50450083	50450083	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	ttttcccctcatagatccagGactgcatagacagctgtatt	7	11	1	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	18	50450083	50450083	G	C	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.704	p.G235A	1.000	pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	73	0	0	79	49	38.28	-	-	-	C	50450083	G	C	50450083	3	2	896	1	0	0	0	0	1	0	0	0	4313	1174	41	2	718	2	DCC	18	50450083	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	28751994	50450083	27627165	37	73026										
COL5A3	0	genome.wustl.edu	37	chr19	10087234	10087234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	gaaaagatgggggcactcacCgggggacctgggtgtcctgc	17	10	1	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	19	10087234	10087234	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	silent	c.3342	p.P1114	0.943	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	35	0	0	27	19	41.3	-	-	-	T	10087234	C	T	10087234	2	4	896	1	0	0	0	0	0	0	0	1	3728	666	23	1		1	COL5A3	19	10087234	Silent	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09		10087234	49041749	38	73027										
ILF3	0	genome.wustl.edu	37	chr19	10798193	10798193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cgggggccagcagaagccctCctacggctcgggctaccagt	14	15	0	1			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	19	10798193	10798193	C	G	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	1	known	missense	c.2243	p.S748C	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	29	0	0	19	14	41.18	-	-	-	G	10798193	C	G	10798193	3	3	896	1	0	0	0	0	1	0	0	0	7766	855	30	2	2381	2	ILF3	19	10798193	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09	710959	10798193	48330790	39	73028										
ENTPD6	0	genome.wustl.edu	37	chr20	25205861	25205861	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	tgtgtcggaccctggagacaCagccgcagagcagccccttc	12	15	0	2			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	20	25205861	25205861	C	G	SNP	ENTPD6	ENST00000376652	human	ensembl	69_37n	1	known	missense	c.1264	p.Q422E	0.026	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586	50	0	0	60	49	44.95	-	-	-	G	25205861	C	G	25205861	3	3	896	1	0	0	0	0	1	0	0	0	5180	479	17	4	1321	4	ENTPD6	20	25205861	Missense_Mutation	SNP	C	TCGA-EW-A1J6-01A-11D-A188-09		25205861	37819659	40	73029										
RNF215	0	genome.wustl.edu	37	chr22	30775717	30775718	+	Frame_Shift_Del	DEL	CA	CA	-													0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	cacccaggacgttgaatttgCacagtgggcaggtctgctgg							TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	22	30775717	30775718	CA	-	DEL	RNF215	ENST00000382363	human	ensembl	69_37n	-1	known	frame_shift_del	c.1094_1093	p.C365fs	1.000:1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999	75	0	0	20	29	54.72	-	-	-	-	30775718	CA	-	30775717	7	5	896	1	0	1	0	1	0	0	0	0	13565	710	25	0	47	0	RNF215	22	30775717	Frame_Shift_Del	DEL	CA	TCGA-EW-A1J6-01A-11D-A188-09		30775717	20528849	41	73030										
TTC38	0	genome.wustl.edu	37	chr22	46685729	46685729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.024390243902439	1	1	0.316588785046729	0	0.422118380062305	1	1	0	gattgacatttcagagagacGtcttcaaccagctgctgatt	9	9	3	4			TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	22	46685729	46685729	G	A	SNP	TTC38	ENST00000445282	human	ensembl	69_37n	1	known	missense	c.1075	p.V359I	0.971	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	56	0	0	17	34	66.67	-	-	-	A	46685729	G	A	46685729	3	1	896	1	0	0	0	0	1	0	0	0	16803	1145	40	1	1299	1	TTC38	22	46685729	Missense_Mutation	SNP	G	TCGA-EW-A1J6-01A-11D-A188-09	15910012	46685729	4618837	42	73031										
ZBTB40	0	genome.wustl.edu	37	chr1	22828833	22828833	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ccttgtctgttctgttactaGaacacaaagaggacctgata	8	9	2	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	22828833	22828833	G	T	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	nonsense	c.1066	p.E356*	0.987	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	26	0	0	15	4	21.05	-	-	-	T	22828833	G	T	22828833	4	4	897	1	0	0	0	0	0	1	0	0	17638	943	33	2	1080	2	ZBTB40	1	22828833	Nonsense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		22828833	226421788	1	73032										
FGR	0	genome.wustl.edu	37	chr1	27939763	27939763	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tcggcccttggtgatgagctCagtgagcaggatcccaaagg	14	10	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	27939763	27939763	C	T	SNP	FGR	ENST00000374003	human	ensembl	69_37n	-1	known	missense	c.1348	p.E450K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FGR	HGNC	ENSG00000000938	22	0	0	12	8	40	-	-	-	T	27939763	C	T	27939763	3	4	897	1	0	0	0	0	1	0	0	0	5920	835	29	2	249	2	FGR	1	27939763	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	5110930	27939763	221310858	2	73033										
EPS15	0	genome.wustl.edu	37	chr1	51874002	51874002	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aattcagctttcagagaagaGatctataatgtgaaagtgaa	9	4	3	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	51874002	51874002	G	C	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	missense	c.1278	p.I426M	0.931	NULL	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	40	0	0	66	16	19.51	-	-	-	C	51874002	G	C	51874002	3	2	897	1	0	0	0	0	1	0	0	0	5229	932	33	2	1456	2	EPS15	1	51874002	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	23934239	51874002	197376619	3	73034										
SGIP1	0	genome.wustl.edu	37	chr1	67138977	67138977	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gatttagcaaaaagcctccaGatgacactacggcccttgct	8	12	0	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	67138977	67138977	G	A	SNP	SGIP1	ENST00000237247	human	ensembl	69_37n	1	known	missense	c.586	p.D196N	0.998	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	92	0	0	87	32	26.89	-	-	-	A	67138977	G	A	67138977	3	1	897	1	0	0	0	0	1	0	0	0	14294	942	33	2	620	2	SGIP1	1	67138977	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	15264975	67138977	182111644	4	73035										
TYW3	0	genome.wustl.edu	37	chr1	75229688	75229688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tcataagaaaaaaagaaaccCagaaaaaacacgtgcccagt	6	9	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	75229688	75229688	C	T	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	1	known	missense	c.671	p.P224L	0.002	NULL	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	62	0	0	70	16	18.6	-	-	-	T	75229688	C	T	75229688	3	4	897	1	0	0	0	0	1	0	0	0	16917	594	21	4	693	4	TYW3	1	75229688	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	8090711	75229688	174020933	5	73036										
FLG	0	genome.wustl.edu	37	chr1	152280830	152280830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tgactgcccacgggaggcatCagaccttccctgggatgtgg	14	12	1	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	152280830	152280830	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.6532	p.D2178N	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	136	0	0	218	35	13.83	-	-	-	T	152280830	C	T	152280830	3	4	897	1	0	0	0	0	1	0	0	0	5968	826	29	2	5657	2	FLG	1	152280830	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	77051142	152280830	96969791	6	73037										
CCT3	0	genome.wustl.edu	37	chr1	156280435	156280435	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gtccaccaaagtacccgtctCaccatttacaccccaggtct	5	17	2	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	156280435	156280435	C	T	SNP	CCT3	ENST00000295688	human	ensembl	69_37n	-1	known	missense	c.1447	p.E483K	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	37	0	0	67	10	12.99	-	-	-	T	156280435	C	T	156280435	3	4	897	1	0	0	0	0	1	0	0	0	2983	835	29	2	198	2	CCT3	1	156280435	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	3999605	156280435	92970186	7	73038										
OR6Y1	0	genome.wustl.edu	37	chr1	158517323	158517323	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gaggcatcctcacaggagacGttaaggagtggagagatatc	14	7	1	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	158517323	158517323	G	C	SNP	OR6Y1	ENST00000302617	human	ensembl	69_37n	-1	known	missense	c.573	p.N191K	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6Y1	HGNC	ENSG00000197532	34	0	0	33	4	10.81	-	-	-	C	158517323	G	C	158517323	3	2	897	1	0	0	0	0	1	0	0	0	11286	1136	40	3	406	3	OR6Y1	1	158517323	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	2236888	158517323	90733298	8	73039										
IL19	0	genome.wustl.edu	37	chr1	206972245	206972245	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gacaggagtccaagaatgtgCactgagggagcgtttccgca	14	9	0	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	206972245	206972245	C	A	SNP	IL19	ENST00000340758	human	ensembl	69_37n	1	known	nonsense	c.6	p.C2*	0.000	NULL	pfam_Interleukin-10/19/20/24,superfamily_4_helix_cytokine-like_core,prints_Interleukin-19,prints_Interleukin-24	-	no_errors	IL19	HGNC	ENSG00000142224	34	0	0	25	10	28.57	-	-	-	A	206972245	C	A	206972245	4	1	897	1	0	0	0	0	0	1	0	0	7703	718	25	4	8	4	IL19	1	206972245	Nonsense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	48454922	206972245	42278376	9	73040										
INTS7	0	genome.wustl.edu	37	chr1	212141942	212141942	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gcaggtggtgggcttgtcttCaggctattacaagtacagat	13	7	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	212141942	212141942	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	silent	c.1923	p.L641	0.652	NULL	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	33	0	0	41	15	26.79	-	-	-	T	212141942	C	T	212141942	2	4	897	1	0	0	0	0	0	0	0	1	7837	813	29	2		2	INTS7	1	212141942	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	5169697	212141942	37108679	10	73041										
URB2	0	genome.wustl.edu	37	chr1	229773010	229773010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tggtcaagagtgacttccctAtccagctggagggagagcag	14	9	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	1	229773010	229773010	A	C	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.2650	p.I884L	0.013	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	45	0	0	40	13	24.53	-	-	-	C	229773010	A	C	229773010	3	2	897	1	0	0	0	0	1	0	0	0	17122	449	16	5	2660	5	URB2	1	229773010	Missense_Mutation	SNP	A	TCGA-EW-A1OV-01A-11D-A142-09	17631068	229773010	19477611	11	73042										
SEMA4F	0	genome.wustl.edu	37	chr2	74901797	74901797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cttttatggcatcttttcttCccagtggtgaggggtcttgg	12	8	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	2	74901797	74901797	C	T	SNP	SEMA4F	ENST00000357877	human	ensembl	69_37n	1	known	missense	c.995	p.S332F	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4F	HGNC	ENSG00000135622	56	0	0	56	24	30	-	-	-	T	74901797	C	T	74901797	3	4	897	1	0	0	0	0	1	0	0	0	14123	855	30	2	1025	2	SEMA4F	2	74901797	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		74901797	168297576	12	73043										
RANBP2	0	genome.wustl.edu	37	chr2	109380048	109380048	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gggtgaaggattaaggccatCtttgccaacacaagcacaca	10	10	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	2	109380048	109380048	C	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.3053	p.S1018C	0.982	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	52	0	0	37	10	21.28	-	-	-	G	109380048	C	G	109380048	3	3	897	1	0	0	0	0	1	0	0	0	13111	913	32	2	3131	2	RANBP2	2	109380048	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	34478251	109380048	133819325	13	73044										
ZAK	0	genome.wustl.edu	37	chr2	174130809	174130809	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cagtggttagatactctgagGatgcggcagattgcatccaa	12	8	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	2	174130809	174130809	G	A	SNP	ZAK	ENST00000375213	human	ensembl	69_37n	1	known	silent	c.1734	p.R578	0.291	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AC013461.1	Clone_based_vega_gene	ENSG00000091436	24	0	0	43	13	23.21	-	-	-	A	174130809	G	A	174130809	2	1	897	1	0	0	0	0	0	0	0	1	17609	1165	41	2		2	ZAK	2	174130809	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	64750761	174130809	69068564	14	73045										
TTN	0	genome.wustl.edu	37	chr2	179495587	179495587	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gttggcgtggatatcatcttCagagatttcggtttcaaagc	11	7	4	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	2	179495587	179495587	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.36394	p.E12132K	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0	67	19	22.09	-	-	-	T	179495587	C	T	179495587	3	4	897	1	0	0	0	0	1	0	0	0	16832	835	29	2	64095	2	TTN	2	179495587	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	5364778	179495587	63703786	15	73046										
CXCR2	0	genome.wustl.edu	37	chr2	219000457	219000457	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cttcacagctgcctcaacccCctcatctacgccttcattgg	5	18	5	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	2	219000457	219000457	C	T	SNP	CXCR2	ENST00000318507	human	ensembl	69_37n	1	known	silent	c.933	p.P311	0.854	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXC/IL8_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR2/IL8RB,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871	20	0	0	36	8	18.18	-	-	-	T	219000457	C	T	219000457	2	4	897	1	0	0	0	0	0	0	0	1	4122	610	22	4		4	CXCR2	2	219000457	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	39504870	219000457	24198916	16	73047										
ARPP21	0	genome.wustl.edu	37	chr3	35724361	35724361	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ggcggctggaggctcagaatCaagaaagaagaaaatccaag	13	7	2	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	35724361	35724361	C	T	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	nonsense	c.151	p.Q51*	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	48	0	0	33	18	35.29	-	-	-	T	35724361	C	T	35724361	4	4	897	1	0	0	0	0	0	1	0	0	982	827	29	2	157	2	ARPP21	3	35724361	Nonsense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		35724361	162298069	17	73048										
CYB561D2	0	genome.wustl.edu	37	chr3	50391063	50391063	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctcactctggttcactgcctCtgtcactggtgcagcctggt	10	14	5	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	50391063	50391063	C	T	SNP	CYB561D2	ENST00000232508	human	ensembl	69_37n	1	known	missense	c.557	p.S186F	0.028	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYB561D2	HGNC	ENSG00000114395	21	0	0	16	10	38.46	-	-	-	T	50391063	C	T	50391063	3	4	897	1	0	0	0	0	1	0	0	0	4152	913	32	2	567	2	CYB561D2	3	50391063	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	14666702	50391063	147631367	18	73049										
MORC1	0	genome.wustl.edu	37	chr3	108724021	108724021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctttttcataatttttgtttCtgaaatatactctacatcag	3	7	4	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	108724021	108724021	C	G	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.1909	p.E637Q	0.059	NULL	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	49	0	0	59	26	30.59	-	-	-	G	108724021	C	G	108724021	3	3	897	1	0	0	0	0	1	0	0	0	9773	922	32	2	1085	2	MORC1	3	108724021	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	58332958	108724021	89298409	19	73050										
C3orf52	0	genome.wustl.edu	37	chr3	111835691	111835691	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	acagctcccgagcactgcttCagctgggtccagtcttgaca	10	14	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	111835691	111835691	C	T	SNP	C3orf52	ENST00000431717	human	ensembl	69_37n	1	known	missense	c.599	p.S200L	0.000	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529	36	0	0	27	10	27.03	-	-	-	T	111835691	C	T	111835691	3	4	897	1	0	0	0	0	1	0	0	0	2252	838	29	2	874	2	C3orf52	3	111835691	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	3111670	111835691	86186739	20	73051										
PDIA5	0	genome.wustl.edu	37	chr3	122835135	122835135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gaaggctgcgactcagctgcGaggccacgccgtaagtgagg	16	11	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	122835135	122835135	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	1	known	missense	c.599	p.R200Q	0.984	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	11	0	0	10	6	37.5	-	-	-	A	122835135	G	A	122835135	3	1	897	1	0	0	0	0	1	0	0	0	11744	1058	37	1	629	1	PDIA5	3	122835135	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	10999444	122835135	75187295	21	73052										
TIPARP	0	genome.wustl.edu	37	chr3	156395730	156395730	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctaggaaccagagtacagatGagaacagcttacatgaacct	9	9	0	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	156395730	156395730	G	A	SNP	TIPARP	ENST00000295924	human	ensembl	69_37n	1	known	missense	c.244	p.E82K	0.997	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659	40	0	0	42	6	12.5	-	-	-	A	156395730	G	A	156395730	3	1	897	1	0	0	0	0	1	0	0	0	16019	1291	45	2	246	2	TIPARP	3	156395730	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	33560595	156395730	41626700	22	73053										
FNDC3B	0	genome.wustl.edu	37	chr3	172070865	172070865	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aaagatctccttccagaaacCacctaccggtgagtgcaagg	9	12	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	172070865	172070865	C	A	SNP	FNDC3B	ENST00000336824	human	ensembl	69_37n	1	known	silent	c.2787	p.T929	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420	16	0	0	19	10	34.48	-	-	-	A	172070865	C	A	172070865	2	1	897	1	0	0	0	0	0	0	0	1	6016	581	21	4		4	FNDC3B	3	172070865	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	15675135	172070865	25951565	23	73054										
PIK3CA	0	genome.wustl.edu	37	chr3	178916854	178916854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctcaagaagcagaaagggaaGaattttttgatgaaacaaga	10	4	1	6			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	178916854	178916854	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.241	p.E81K	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	38	0	0	38	6	13.64	-	-	-	A	178916854	G	A	178916854	3	1	897	1	0	0	0	0	1	0	0	0	11987	943	33	2	243	2	PIK3CA	3	178916854	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	6845989	178916854	19105576	24	73055										
EPHB3	0	genome.wustl.edu	37	chr3	184298586	184298586	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ggaagttcacttctgctagtGatgtctggagctacggaatt	12	7	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	3	184298586	184298586	G	A	SNP	EPHB3	ENST00000330394	human	ensembl	69_37n	1	known	missense	c.2458	p.D820N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580	27	0	0	34	9	20.93	-	-	-	A	184298586	G	A	184298586	3	1	897	1	0	0	0	0	1	0	0	0	5213	1290	45	2	2508	2	EPHB3	3	184298586	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	5381732	184298586	13723844	25	73056										
PHOX2B	0	genome.wustl.edu	37	chr4	41748265	41748265	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tttttgcccgaggagccgttCttggccgcggccgctgcggc	15	14	1	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	4	41748265	41748265	C	T	SNP	PHOX2B	ENST00000510424	human	ensembl	69_37n	-1	novel	missense	c.323	p.R108K	0.999	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PHOX2B	HGNC	ENSG00000109132	12	0	0	17	7	29.17	-	-	-	T	41748265	C	T	41748265	3	4	897	1	0	0	0	0	1	0	0	0	11933	912	32	2	444	2	PHOX2B	4	41748265	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		41748265	149406011	26	73057										
CENPC1	0	genome.wustl.edu	37	chr4	68355813	68355813	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	accatgcttaacaaaaaattGatatgtatcttgtggcctta	6	7	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	4	68355813	68355813	G	A	SNP	CENPC1	ENST00000273853	human	ensembl	69_37n	-1	known	nonsense	c.2542	p.Q848*	0.026	superfamily_RmlC_Cupin	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC1	HGNC	ENSG00000145241	34	0	0	32	9	21.95	-	-	-	A	68355813	G	A	68355813	4	1	897	1	0	0	0	0	0	1	0	0	3258	1299	45	2	301	2	CENPC1	4	68355813	Nonsense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	26607548	68355813	122798463	27	73058										
CCDC111	0	genome.wustl.edu	37	chr4	185612860	185612860	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gtatgtctcctgtttcttttCaaagaggtaagtacagattt	8	6	3	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	4	185612860	185612860	C	T	SNP	CCDC111	ENST00000314970	human	ensembl	69_37n	1	known	silent	c.1419	p.F473	1.000	NULL	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	CCDC111	HGNC	ENSG00000164306	79	0	0	72	20	21.74	-	-	-	T	185612860	C	T	185612860	2	4	897	1	0	0	0	0	0	0	0	1	2773	825	29	2		2	CCDC111	4	185612860	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	117257047	185612860	5541416	28	73059										
CTNNA1	0	genome.wustl.edu	37	chr5	138145810	138145810	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gcaacatggttcgggcagctCgagctttgctctctgctgtt	12	11	1	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	5	138145810	138145810	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	1	known	nonsense	c.385	p.R129*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	45	0	0	26	17	39.53	-	-	-	T	138145810	C	T	138145810	4	4	897	1	0	0	0	0	0	1	0	0	4044	876	31	1	395	1	CTNNA1	5	138145810	Nonsense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		138145810	42769450	29	73060										
PCDHB11	0	genome.wustl.edu	37	chr5	140579848	140579848	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gatgtaggaatcaatgctgtAaaaagctacacaataagccc	8	8	1	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	5	140579848	140579848	A	G	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	silent	c.501	p.V167	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	42	0	0	32	9	21.95	-	-	-	G	140579848	A	G	140579848	2	3	897	1	0	0	0	0	0	0	0	1	11609	349	13	5		5	PCDHB11	5	140579848	Silent	SNP	A	TCGA-EW-A1OV-01A-11D-A142-09	2434038	140579848	40335412	30	73061										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26124000	26124000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gggatggacctgtttcagcaCcttgtacacgtacacagagt	11	10	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	6	26124000	26124000	C	G	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.133	p.V45L	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	67	0	0	94	37	28.24	-	-	-	G	26124000	C	G	26124000	3	3	897	1	0	0	0	0	1	0	0	0	7193	507	18	4	251	4	HIST1H2BC	6	26124000	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		26124000	144991067	31	73062										
EPB41L2	0	genome.wustl.edu	37	chr6	131247796	131247796	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ccaaagtagtctttctccaaGagattgaggtgttcacacac	8	10	3	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	6	131247796	131247796	G	C	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	silent	c.759	p.L253	0.833	pirsf_Band_41_protein,pfam_FERM_N,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	52	0	0	58	13	18.31	-	-	-	C	131247796	G	C	131247796	2	2	897	1	0	0	0	0	0	0	0	1	5190	929	33	2		2	EPB41L2	6	131247796	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	105123796	131247796	39867271	32	73063										
REPS1	0	genome.wustl.edu	37	chr6	139241412	139241412	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cttattttcttctaaaaggtCagatggtttcacaagtaatg	7	6	4	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	6	139241412	139241412	C	T	SNP	REPS1	ENST00000450536	human	ensembl	69_37n	-1	known	missense	c.1468	p.D490N	1.000	NULL	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597	64	0	0	97	25	20.49	-	-	-	T	139241412	C	T	139241412	3	4	897	1	0	0	0	0	1	0	0	0	13311	826	29	2	958	2	REPS1	6	139241412	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	7993616	139241412	31873655	33	73064										
FRMD1	0	genome.wustl.edu	37	chr6	168462627	168462627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aaaccagcttctgtgctgcgGgcagcccatccagctggatc	11	14	1	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	6	168462627	168462627	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	69_37n	-1	known	missense	c.905	p.P302L	0.993	pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	14	0	0	9	13	59.09	-	-	-	A	168462627	G	A	168462627	3	1	897	1	0	0	0	0	1	0	0	0	6098	1232	43	4	760	4	FRMD1	6	168462627	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	29221215	168462627	2652440	34	73065										
CYP2W1	0	genome.wustl.edu	37	chr7	1024666	1024666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tgcacagcctgggcgtgggcCgggagccggtggctgacaag	19	11	0	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	7	1024666	1024666	C	T	SNP	CYP2W1	ENST00000308919	human	ensembl	69_37n	1	known	missense	c.418	p.R140W	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2W1	HGNC	ENSG00000073067	16	0	0	17	7	28	-	-	-	T	1024666	C	T	1024666	3	4	897	1	0	0	0	0	1	0	0	0	4207	643	23	1	428	1	CYP2W1	7	1024666	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		1024666	158113997	35	73066										
SDK1	0	genome.wustl.edu	37	chr7	4277291	4277291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttccacagctcaagtggaagCcccattctacgaggagtggt	11	11	2	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	7	4277291	4277291	C	T	SNP	SDK1	ENST00000404826	human	ensembl	69_37n	1	known	missense	c.6005	p.A2002V	0.293	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK1	HGNC	ENSG00000146555	55	0	0	67	18	21.18	-	-	-	T	4277291	C	T	4277291	3	4	897	1	0	0	0	0	1	0	0	0	14056	739	26	4	6171	4	SDK1	7	4277291	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	3252625	4277291	154861372	36	73067										
SLC29A4	0	genome.wustl.edu	37	chr7	5338962	5338962	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttcatcacgctgtgcctgttCcccggcctcgagtctgagat	10	14	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	7	5338962	5338962	C	T	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	1	known	silent	c.1113	p.F371	1.000	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	28	0	0	21	6	22.22	-	-	-	T	5338962	C	T	5338962	2	4	897	1	0	0	0	0	0	0	0	1	14626	854	30	2		2	SLC29A4	7	5338962	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	1061671	5338962	153799701	37	73068										
WBSCR28	0	genome.wustl.edu	37	chr7	73280136	73280136	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agggtcttccttgctgccctCactgtctgcgtcctcggact	10	15	3	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	7	73280136	73280136	C	T	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	1	known	missense	c.731	p.S244L	0.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	27	0	0	25	7	21.88	-	-	-	T	73280136	C	T	73280136	3	4	897	1	0	0	0	0	1	0	0	0	17364	838	29	2	741	2	WBSCR28	7	73280136	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	67941174	73280136	85858527	38	73069										
PKHD1L1	0	genome.wustl.edu	37	chr8	110447418	110447418	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tctttttctttttttcacaaGaaaaagagctcaagtgccag	6	8	4	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	8	110447418	110447418	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	splice_site	c.3341-1	e29-1	1.000	-	-	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	31	0	0	53	8	13.11	-	-	-	C	110447418	G	C	110447418	5	2	897	1	0	0	0	0	0	0	1	0	12046	956	33	2	3454	2	PKHD1L1	8	110447418	Splice_Site	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		110447418	35916604	39	73070										
SYBU	0	genome.wustl.edu	37	chr8	110598367	110598367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aaatgctgcctgtgctgctcGaggagctaaaatcagcttca	10	10	2	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	8	110598367	110598367	G	A	SNP	SYBU	ENST00000276646	human	ensembl	69_37n	-1	known	missense	c.452	p.S151L	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	25	0	0	27	8	22.86	-	-	-	A	110598367	G	A	110598367	3	1	897	1	0	0	0	0	1	0	0	0	15518	1059	37	1	1555	1	SYBU	8	110598367	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	150949	110598367	35765655	40	73071										
TRAPPC9	0	genome.wustl.edu	37	chr8	141415792	141415792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gttgatgccattggtggtgaGggcacctgcaaaccaagagg	15	8	0	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	8	141415792	141415792	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.1186	p.L396F	1.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	62	0	0	57	13	18.57	-	-	-	A	141415792	G	A	141415792	3	1	897	1	0	0	0	0	1	0	0	0	16561	1000	35	4	2626	4	TRAPPC9	8	141415792	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	30817425	141415792	4948230	41	73072										
ZNF251	0	genome.wustl.edu	37	chr8	145947971	145947971	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ataaggctggagcttcgactGaaggccttcccacagtgact	11	11	0	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	8	145947971	145947971	G	A	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	silent	c.1074	p.F358	0.486	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	41	0	0	31	9	22.5	-	-	-	A	145947971	G	A	145947971	2	1	897	1	0	0	0	0	0	0	0	1	17892	1281	45	2		2	ZNF251	8	145947971	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	4532179	145947971	416051	42	73073										
VPS13A	0	genome.wustl.edu	37	chr9	79792653	79792653	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tcggtggtcgtggacgtgttGaaccggttcttgggggacta	17	7	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	9	79792653	79792653	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	69_37n	1	known	silent	c.33	p.L11	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	31	0	0	43	8	15.69	-	-	-	A	79792653	G	A	79792653	2	1	897	1	0	0	0	0	0	0	0	1	17286	1281	45	2		2	VPS13A	9	79792653	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		79792653	61420778	43	73074										
PTPDC1	0	genome.wustl.edu	37	chr9	96870160	96870160	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gtttacaacaccctgaagaaAatatttaagcacacgctgga	7	9	0	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	9	96870160	96870160	A	T	SNP	PTPDC1	ENST00000375360	human	ensembl	69_37n	1	known	missense	c.2199	p.K733N	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	29	0	0	21	8	27.59	-	-	-	T	96870160	A	T	96870160	3	4	897	1	0	0	0	0	1	0	0	0	12854	11	1	5	2475	5	PTPDC1	9	96870160	Missense_Mutation	SNP	A	TCGA-EW-A1OV-01A-11D-A142-09	17077507	96870160	44343271	44	73075										
RC3H2	0	genome.wustl.edu	37	chr9	125621108	125621108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tgcttctaataatgtcatctCgttggtacataggtgggcgc	11	8	3	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	9	125621108	125621108	C	T	SNP	RC3H2	ENST00000357244	human	ensembl	69_37n	-1	known	missense	c.2123	p.R708Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	33	0	0	31	11	26.19	-	-	-	T	125621108	C	T	125621108	3	4	897	1	0	0	0	0	1	0	0	0	13250	884	31	1	1570	1	RC3H2	9	125621108	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	28750948	125621108	15592323	45	73076										
CUBN	0	genome.wustl.edu	37	chr10	17142117	17142117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ggagttcatgagggaggctgGagccacaaaatcttccaagt	13	8	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	17142117	17142117	G	C	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.1652	p.S551C	0.764	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	33	0	0	33	29	46.77	-	-	-	C	17142117	G	C	17142117	3	2	897	1	0	0	0	0	1	0	0	0	4082	1174	41	2	9435	2	CUBN	10	17142117	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		17142117	118392630	46	73077										
ARMC4	0	genome.wustl.edu	37	chr10	28250550	28250550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	atattctgatggcaaatctgCacttgcttcctgacgatggt	9	9	2	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	28250550	28250550	C	A	SNP	ARMC4	ENST00000305242	human	ensembl	69_37n	-1	known	missense	c.1333	p.A445S	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP/TIF31_domain,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	43	0	0	35	23	39.66	-	-	-	A	28250550	C	A	28250550	3	1	897	1	0	0	0	0	1	0	0	0	957	710	25	4	1845	4	ARMC4	10	28250550	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	11108433	28250550	107284197	47	73078										
SUPV3L1	0	genome.wustl.edu	37	chr10	70960164	70960164	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cagagctggcagattcagctCacggtttaaagaaggagagg	14	7	2	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	70960164	70960164	C	T	SNP	SUPV3L1	ENST00000359655	human	ensembl	69_37n	1	known	missense	c.1427	p.S476L	0.986	pfscan_Helicase_C	pfam_SUV3_C,pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	-	no_errors	SUPV3L1	HGNC	ENSG00000156502	35	0	0	19	28	59.57	-	-	-	T	70960164	C	T	70960164	3	4	897	1	0	0	0	0	1	0	0	0	15493	838	29	2	1469	2	SUPV3L1	10	70960164	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	42709614	70960164	64574583	48	73079										
PTEN	0	genome.wustl.edu	37	chr10	89717752	89717752	+	Frame_Shift_Del	DEL	C	C	-													0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	atcaaagtagagttcttccaCaaacagaacaagatgctaaa							TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	89717752	89717752	C	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_del	c.777	p.H259fs	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	27	0	0	24	26	49.06	-	-	-	-	89717752	C	-	89717752	7	5	897	1	0	1	0	1	0	0	0	0	12818	477	17	0	803	0	PTEN	10	89717752	Frame_Shift_Del	DEL	C	TCGA-EW-A1OV-01A-11D-A142-09	18757588	89717752	45816995	49	73080										
AFAP1L2	0	genome.wustl.edu	37	chr10	116068228	116068228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gacctcagggtggccatccaCggagctcccatactctgaag	11	14	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	116068228	116068228	C	A	SNP	AFAP1L2	ENST00000545353	human	ensembl	69_37n	-1	known	missense	c.1090	p.V364L	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	57	0	0	38	57	60	-	-	-	A	116068228	C	A	116068228	3	1	897	1	0	0	0	0	1	0	0	0	355	536	19	3	1569	3	AFAP1L2	10	116068228	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	26350476	116068228	19466519	50	73081										
INPP5A	0	genome.wustl.edu	37	chr10	134523866	134523866	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttgacttggtgaatatccatCttttccatgatgcttccaat	6	9	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	10	134523866	134523866	C	T	SNP	INPP5A	ENST00000368594	human	ensembl	69_37n	1	known	missense	c.553	p.L185F	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5A	HGNC	ENSG00000068383	39	0	0	53	31	36.9	-	-	-	T	134523866	C	T	134523866	3	4	897	1	0	0	0	0	1	0	0	0	7808	913	32	2	583	2	INPP5A	10	134523866	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	18455638	134523866	1010881	51	73082										
GPR137	0	genome.wustl.edu	37	chr11	64054186	64054186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gctatcagacggtgttcctgGccctctgtctgctctgggcc	12	14	4	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	11	64054186	64054186	G	C	SNP	GPR137	ENST00000313074	human	ensembl	69_37n	1	known	missense	c.190	p.A64P	0.996	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264	36	0	0	32	17	34.69	-	-	-	C	64054186	G	C	64054186	3	2	897	1	0	0	0	0	1	0	0	0	6695	1203	42	4	374	4	GPR137	11	64054186	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		64054186	70952330	52	73083										
AMOTL1	0	genome.wustl.edu	37	chr11	94603937	94603937	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agcccgagttccctgatggaGagatgatggaagtcctcatc	12	10	1	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	11	94603937	94603937	G	C	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	1	known	missense	c.2848	p.E950Q	0.999	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	21	0	0	16	11	40.74	-	-	-	C	94603937	G	C	94603937	3	2	897	1	0	0	0	0	1	0	0	0	583	943	33	2	2898	2	AMOTL1	11	94603937	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	30549751	94603937	40402579	53	73084										
GUCY1A2	0	genome.wustl.edu	37	chr11	106681104	106681104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tgtctgagagatgtagccctCggcccatgagttcatccaac	10	12	2	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	11	106681104	106681104	C	T	SNP	GUCY1A2	ENST00000282249	human	ensembl	69_37n	-1	known	missense	c.1307	p.R436Q	1.000	pfam_Haem_no_assoc-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402	50	0	0	44	8	15.38	-	-	-	T	106681104	C	T	106681104	3	4	897	1	0	0	0	0	1	0	0	0	6944	884	31	1	907	1	GUCY1A2	11	106681104	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	12077167	106681104	28325412	54	73085										
ZNF259	0	genome.wustl.edu	37	chr11	116657763	116657763	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agagtcagtcttcaccacttCtctgttcatgtcctgggaag	9	11	5	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	11	116657763	116657763	C	T	SNP	ZNF259	ENST00000227322	human	ensembl	69_37n	-1	known	missense	c.346	p.E116K	1.000	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	-	no_errors	ZNF259	HGNC	ENSG00000109917	38	0	0	36	13	26.53	-	-	-	T	116657763	C	T	116657763	3	4	897	1	0	0	0	0	1	0	0	0	17897	922	32	2	1081	2	ZNF259	11	116657763	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	9976659	116657763	18348753	55	73086										
IL10RA	0	genome.wustl.edu	37	chr11	117859104	117859104	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctcttctccccagggacagaGctgcccagccctccgtctgt	9	18	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	11	117859104	117859104	G	A	SNP	IL10RA	ENST00000227752	human	ensembl	69_37n	1	known	silent	c.75	p.E25	0.816	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324	33	0	0	24	18	42.86	-	-	-	A	117859104	G	A	117859104	2	1	897	1	0	0	0	0	0	0	0	1	7674	962	34	4		4	IL10RA	11	117859104	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	1201341	117859104	17147412	56	73087										
PDZRN4	0	genome.wustl.edu	37	chr12	41966376	41966376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aagacactctgggaagtgttGaacttcagtacaatgagagc	11	7	2	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	12	41966376	41966376	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	missense	c.1795	p.E599K	0.954	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	34	0	0	35	11	23.91	-	-	-	A	41966376	G	A	41966376	3	1	897	1	0	0	0	0	1	0	0	0	11783	1291	45	2	1906	2	PDZRN4	12	41966376	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		41966376	91885519	57	73088										
OR6C6	0	genome.wustl.edu	37	chr12	55688858	55688858	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aagaaatacattggcgtcttGagccggggatccagcagggt	14	8	1	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	12	55688858	55688858	G	C	SNP	OR6C6	ENST00000358433	human	ensembl	69_37n	-1	known	silent	c.159	p.L53	0.077	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C6	HGNC	ENSG00000188324	26	0	0	39	15	27.78	-	-	-	C	55688858	G	C	55688858	2	2	897	1	0	0	0	0	0	0	0	1	11267	1277	45	2		2	OR6C6	12	55688858	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	13722482	55688858	78163037	58	73089										
WSCD2	0	genome.wustl.edu	37	chr12	108620851	108620851	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cgctccatgacagagaggatGagcagctctgtgcccagaag	13	11	1	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	12	108620851	108620851	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.889	p.E297K	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	23	0	0	22	6	21.43	-	-	-	A	108620851	G	A	108620851	3	1	897	1	0	0	0	0	1	0	0	0	17504	1291	45	2	907	2	WSCD2	12	108620851	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	52931993	108620851	25231044	59	73090										
NOS1	0	genome.wustl.edu	37	chr12	117696209	117696209	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gtcattcacttacttcctttCttcctgcacagagttggggt	8	11	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	12	117696209	117696209	C	G	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.2524	p.E842Q	1.000	pfam_Flavodoxin/NO_synth,pirsf_NOS_met,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	46	0	0	62	9	12.68	-	-	-	G	117696209	C	G	117696209	3	3	897	1	0	0	0	0	1	0	0	0	10613	922	32	2	1836	2	NOS1	12	117696209	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	9075358	117696209	16155686	60	73091										
EML5	0	genome.wustl.edu	37	chr14	89153606	89153606	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctttttatagcataggtcttGagacatctttcaaaagagtc	7	7	3	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	14	89153606	89153606	G	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	silent	c.2808	p.L936	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	44	0	0	37	14	27.45	-	-	-	T	89153606	G	T	89153606	2	4	897	1	0	0	0	0	0	0	0	1	5137	1277	45	2		2	EML5	14	89153606	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		89153606	18195934	61	73092										
IGDCC3	0	genome.wustl.edu	37	chr15	65627716	65627716	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gatgccaccgtcctcagctcGaagtcctgtgatctgcagga	11	13	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	15	65627716	65627716	G	A	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	nonsense	c.598	p.R200*	0.966	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	23	0	0	14	13	48.15	-	-	-	A	65627716	G	A	65627716	4	1	897	1	0	0	0	0	0	1	0	0	7622	1066	37	1	1890	1	IGDCC3	15	65627716	Nonsense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		65627716	36903676	62	73093										
AAGAB	0	genome.wustl.edu	37	chr15	67496430	67496430	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tctttcaaaattctccacatCtcctcctccagtggtaagac	4	14	4	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	15	67496430	67496430	C	G	SNP	AAGAB	ENST00000261880	human	ensembl	69_37n	-1	known	missense	c.772	p.D258H	1.000	pfam_Alpha/Gamma-adaptin-bd_p34	pfam_Alpha/Gamma-adaptin-bd_p34	-	no_errors	AAGAB	HGNC	ENSG00000103591	50	0	0	29	14	32.56	-	-	-	G	67496430	C	G	67496430	3	3	897	1	0	0	0	0	1	0	0	0	15	913	32	2	187	2	AAGAB	15	67496430	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	1868714	67496430	35034962	63	73094										
CEMP1	0	genome.wustl.edu	37	chr16	2580796	2580796	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agggcacaaggggttgatctCagcccacaagccccaggggc	14	13	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	2580796	2580796	C	T	SNP	CEMP1	ENST00000382350	human	ensembl	69_37n	-1	known	silent	c.279	p.L93	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923	23	0	0	25	6	19.35	-	-	-	T	2580796	C	T	2580796	2	4	897	1	0	0	0	0	0	0	0	1	3253	813	29	2		2	CEMP1	16	2580796	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		2580796	87773957	64	73095										
SRL	0	genome.wustl.edu	37	chr16	4247812	4247812	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttgattacctgtatagagctGatagcgagtattttccagcc	9	8	0	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	4247812	4247812	G	A	SNP	SRL	ENST00000399609	human	ensembl	69_37n	-1	known	nonsense	c.364	p.Q122*	1.000	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	-	no_errors	SRL	HGNC	ENSG00000185739	33	0	0	37	19	33.93	-	-	-	A	4247812	G	A	4247812	4	1	897	1	0	0	0	0	0	1	0	0	15241	1299	45	2	1069	2	SRL	16	4247812	Nonsense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	1667016	4247812	86106941	65	73096										
ZNF500	0	genome.wustl.edu	37	chr16	4812753	4812753	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cgtcatcagaaagcagctctGagccctgcacacagacagtg	10	13	3	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	4812753	4812753	G	A	SNP	ZNF500	ENST00000219478	human	ensembl	69_37n	-1	known	missense	c.419	p.S140L	0.020	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF500	HGNC	ENSG00000103199	22	0	0	27	8	22.86	-	-	-	A	4812753	G	A	4812753	3	1	897	1	0	0	0	0	1	0	0	0	18044	1294	45	2	1039	2	ZNF500	16	4812753	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	564941	4812753	85542000	66	73097										
SMG1	0	genome.wustl.edu	37	chr16	18865076	18865076	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aatctctttccattctgcctGgatccatttagccagtgtca	6	12	3	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	18865076	18865076	G	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	nonsense	c.4597	p.Q1533*	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	40	0	0	81	11	11.96	-	-	-	A	18865076	G	A	18865076	4	1	897	1	0	0	0	0	0	1	0	0	14884	1357	47	4	6520	4	SMG1	16	18865076	Nonsense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	14052323	18865076	71489677	67	73098										
ELMO3	0	genome.wustl.edu	37	chr16	67235311	67235311	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	atgcttgactatctttggcaGaggaaccttcgccagttcat	9	10	2	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	67235311	67235311	G	A	SNP	ELMO3	ENST00000571587	human	ensembl	69_37n	1	known	splice_site	c.288-1	e4-1	1.000	-	-	-	no_errors	ELMO3	HGNC	ENSG00000102890	60	0	0	56	7	11.11	-	-	-	A	67235311	G	A	67235311	5	1	897	1	0	0	0	0	0	0	1	0	5104	933	33	2	961	2	ELMO3	16	67235311	Splice_Site	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	48370235	67235311	23119442	68	73099										
TSNAXIP1	0	genome.wustl.edu	37	chr16	67861265	67861265	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agacttgctcaactaccgctCactgtttatggaggtgggtg	12	9	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	16	67861265	67861265	C	G	SNP	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	1	known	nonsense	c.1616	p.S539*	0.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	30	0	0	25	9	26.47	-	-	-	G	67861265	C	G	67861265	4	3	897	1	0	0	0	0	0	1	0	0	16728	838	29	2	1662	2	TSNAXIP1	16	67861265	Nonsense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	625954	67861265	22493488	69	73100										
XAF1	0	genome.wustl.edu	37	chr17	6676441	6676441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ccatttcttaggagaaatgcCggtggttagcttcatcaaaa	9	8	3	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	17	6676441	6676441	C	T	SNP	XAF1	ENST00000361842	human	ensembl	69_37n	1	known	missense	c.859	p.R287W	0.001	NULL	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	XAF1	HGNC	ENSG00000132530	59	0	0	37	8	17.78	-	-	-	T	6676441	C	T	6676441	3	4	897	1	0	0	0	0	1	0	0	0	17516	643	23	1	885	1	XAF1	17	6676441	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09		6676441	74518769	70	73101										
NT5M	0	genome.wustl.edu	37	chr17	17248215	17248215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctcatagacgaccggccggaCatcacaggcaagtggcctgc	12	14	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	17	17248215	17248215	C	T	SNP	NT5M	ENST00000389022	human	ensembl	69_37n	1	known	silent	c.537	p.D179	1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309	30	0	0	23	17	41.46	-	-	-	T	17248215	C	T	17248215	2	4	897	1	0	0	0	0	0	0	0	1	10767	477	17	4		4	NT5M	17	17248215	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	10571774	17248215	63946995	71	73102										
MED1	0	genome.wustl.edu	37	chr17	37590562	37590562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ggtgcttagaaaattcatcaAaatttttttccctataagga	6	6	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	17	37590562	37590562	A	G	SNP	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	missense	c.440	p.F147S	1.000	pfam_Mediator_Med1_met/fun	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	40	0	0	23	11	32.35	-	-	-	G	37590562	A	G	37590562	3	3	897	1	0	0	0	0	1	0	0	0	9496	14	1	5	4349	5	MED1	17	37590562	Missense_Mutation	SNP	A	TCGA-EW-A1OV-01A-11D-A142-09	20342347	37590562	43604648	72	73103										
GPR108	0	genome.wustl.edu	37	chr19	6731093	6731093	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttgtagcccgtgagcacgaaGaaggccagggtggagccctc	15	11	0	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	19	6731093	6731093	G	A	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	silent	c.1464	p.F488	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	14	0	0	13	5	27.78	-	-	-	A	6731093	G	A	6731093	2	1	897	1	0	0	0	0	0	0	0	1	6674	933	33	2		2	GPR108	19	6731093	Silent	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		6731093	52397890	73	73104										
COL5A3	0	genome.wustl.edu	37	chr19	10106254	10106254	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	actcaccatcttgcccactcGgccagggggtccatgaggtc	11	15	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	19	10106254	10106254	G	C	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.1573	p.R525G	0.521	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	31	0	0	23	9	28.12	-	-	-	C	10106254	G	C	10106254	3	2	897	1	0	0	0	0	1	0	0	0	3728	1124	39	3	3872	3	COL5A3	19	10106254	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	3375161	10106254	49022729	74	73105										
ZNF536	0	genome.wustl.edu	37	chr19	30936548	30936548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	accacgccgggctcctctaaCgtcaccgaggagagcggggt	14	14	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	19	30936548	30936548	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	silent	c.2079	p.N693	0.926	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	8	0	0	13	5	27.78	-	-	-	T	30936548	C	T	30936548	2	4	897	1	0	0	0	0	0	0	0	1	18070	535	19	1		1	ZNF536	19	30936548	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	20830294	30936548	28192435	75	73106										
CPT1C	0	genome.wustl.edu	37	chr19	50216736	50216736	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctggatgtggcctccctgttCcaggcgggacagcattttaa	12	11	0	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	19	50216736	50216736	C	G	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	1	known	missense	c.2286	p.F762L	0.736	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	20	0	0	17	10	35.71	-	-	-	G	50216736	C	G	50216736	3	3	897	1	0	0	0	0	1	0	0	0	3863	854	30	2	2356	2	CPT1C	19	50216736	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	19280188	50216736	8912247	76	73107										
ZNF534	0	genome.wustl.edu	37	chr19	52942307	52942307	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	atgaatgtggcaaggtcttcCgtcggaattcacaccttgtg	11	9	2	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	19	52942307	52942307	C	A	SNP	ZNF534	ENST00000332323	human	ensembl	69_37n	1	known	missense	c.1633	p.R545S	0.058	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	41	0	0	66	26	28.26	-	-	-	A	52942307	C	A	52942307	3	1	897	1	0	0	0	0	1	0	0	0	18069	652	23	3	1647	3	ZNF534	19	52942307	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	2725571	52942307	6186676	77	73108										
CECR2	0	genome.wustl.edu	37	chr22	17983944	17983944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	cagaagaggaatggagacagGtcaccgagagttttcgcgag	15	7	1	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	22	17983944	17983944	G	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.700	p.V234I	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	32	0	0	30	5	14.29	-	-	-	A	17983944	G	A	17983944	3	1	897	1	0	0	0	0	1	0	0	0	3235	1261	44	4	664	4	CECR2	22	17983944	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		17983944	33320622	78	73109										
PIWIL3	0	genome.wustl.edu	37	chr22	25147426	25147426	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	gtgtcttcaggattctgcttCcaatcaatatcatctactct	5	11	7	0			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	22	25147426	25147426	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	nonsense	c.1017	p.W339*	0.959	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	114	0	0	124	44	26.19	-	-	-	T	25147426	C	T	25147426	4	4	897	1	0	0	0	0	0	1	0	0	12033	856	30	2	1683	2	PIWIL3	22	25147426	Nonsense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	7163482	25147426	26157140	79	73110										
DNAJB7	0	genome.wustl.edu	37	chr22	41257383	41257383	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttctctttcttgatcactttCaataattttctttgtattaa	2	7	5	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	22	41257383	41257383	C	T	SNP	DNAJB7	ENST00000307221	human	ensembl	69_37n	-1	known	missense	c.616	p.E206K	0.158	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_ConA-like_lec_gl,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB7	HGNC	ENSG00000172404	26	0	0	35	10	22.22	-	-	-	T	41257383	C	T	41257383	3	4	897	1	0	0	0	0	1	0	0	0	4660	835	29	2	317	2	DNAJB7	22	41257383	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	16109957	41257383	10047183	80	73111										
FANCB	0	genome.wustl.edu	37	chrX	14861741	14861741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ctgatttcaactgaacctcaGctactttcaaagttatttct	4	10	4	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	14861741	14861741	G	A	SNP	FANCB	ENST00000324138	human	ensembl	69_37n	-1	known	missense	c.2528	p.A843V	0.977	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544	64	0	0	67	19	22.09	-	-	-	A	14861741	G	A	14861741	3	1	897	1	0	0	0	0	1	0	0	0	5709	971	34	4	55	4	FANCB	23	14861741	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09		14861741	140408819	81	73112										
OGT	0	genome.wustl.edu	37	chrX	70776923	70776923	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aaattaatcctgcatttgcaGatgcacatagcaatctggct	7	9	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	70776923	70776923	G	A	SNP	OGT	ENST00000373719	human	ensembl	69_37n	1	known	missense	c.1288	p.D430N	1.000	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	40	0	0	44	11	20	-	-	-	A	70776923	G	A	70776923	3	1	897	1	0	0	0	0	1	0	0	0	10920	942	33	2	1326	2	OGT	23	70776923	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	55915182	70776923	84493637	82	73113										
KIAA2022	0	genome.wustl.edu	37	chrX	73962009	73962009	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	agcagatgataaaggcatttCagaagagcatgtcgttggta	12	5	1	4			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	73962009	73962009	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.2383	p.E795K	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	31	0	0	32	7	17.95	-	-	-	T	73962009	C	T	73962009	3	4	897	1	0	0	0	0	1	0	0	0	8321	835	29	2	2175	2	KIAA2022	23	73962009	Missense_Mutation	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	3185086	73962009	81308551	83	73114										
KIAA2022	0	genome.wustl.edu	37	chrX	73964065	73964065	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	ttgggaagtgaccatgtgttCaggccttttgcaatgccaga	12	8	1	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	73964065	73964065	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.327	p.L109	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	38	0	0	41	6	12.77	-	-	-	T	73964065	C	T	73964065	2	4	897	1	0	0	0	0	0	0	0	1	8321	813	29	2		2	KIAA2022	23	73964065	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	2056	73964065	81306495	84	73115										
CXorf40A	0	genome.wustl.edu	37	chrX	148628334	148628334	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	tgccccgaagacttaactccCgatgaggttgtggaactaga	11	10	0	3			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	148628334	148628334	C	G	SNP	CXorf40A	ENST00000359293	human	ensembl	69_37n	1	known	silent	c.303	p.P101	0.000	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	44	0	0	54	19	26.03	-	-	-	G	148628334	C	G	148628334	2	3	897	1	0	0	0	0	0	0	0	1	4139	639	23	3		3	CXorf40A	23	148628334	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	74664269	148628334	6642226	85	73116										
MAGEA4	0	genome.wustl.edu	37	chrX	151092751	151092751	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aagacaggccttctgataatCgtcctgggcacaattgcaat	9	10	1	2			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	151092751	151092751	C	T	SNP	MAGEA4	ENST00000276344	human	ensembl	69_37n	1	known	silent	c.615	p.I205	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	60	0	0	83	10	10.75	-	-	-	T	151092751	C	T	151092751	2	4	897	1	0	0	0	0	0	0	0	1	9237	874	31	1		1	MAGEA4	23	151092751	Silent	SNP	C	TCGA-EW-A1OV-01A-11D-A142-09	2464417	151092751	4177809	86	73117										
RAB39B	0	genome.wustl.edu	37	chrX	154493495	154493495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.494252873563218	43	1.34718509809388e-12	3.24025806451613	3.32447817836812	3.21557285873192	2.13435110984748e-06	0.00017394961545257	30	aaagcgaccctcggtgaagcGgcggatcaggcaggacttgc	15	11	1	1			TCGA-EW-A1OV-01A-11D-A142-09	TCGA-EW-A1OV-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e27ca8f5-3f76-4531-87ea-ba3a44f6830d	39d05c29-a4bb-4b5f-a818-c94045721134	X	154493495	154493495	G	A	SNP	RAB39B	ENST00000369454	human	ensembl	69_37n	-1	known	missense	c.79	p.R27C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961	15	0	0	33	10	23.26	-	-	-	A	154493495	G	A	154493495	3	1	897	1	0	0	0	0	1	0	0	0	13013	1116	39	1	570	1	RAB39B	23	154493495	Missense_Mutation	SNP	G	TCGA-EW-A1OV-01A-11D-A142-09	3400744	154493495	777065	87	73118										
ARID1A	0	genome.wustl.edu	37	chr1	27107135	27107136	+	Frame_Shift_Ins	INS	-	-	A													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	aaggtggacgagaaccactcINSagagtttactctgtacgaat							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	1	27107135	27107136	-	A	INS	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	frame_shift_ins	c.6746_6747	p.E2250fs	1.000:0.712	superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	27	0	0	2	5	71.43	-	-	-	A	27107136	-	A	27107135	7	5	898	1	0	1	1	0	0	0	0	0	915	838	29	0	6824	0	ARID1A	1	27107135	Frame_Shift_Ins	INS	-	TCGA-EW-A1OX-01A-11D-A142-09		27107135	222143486	1	73119										
ARID4B	0	genome.wustl.edu	37	chr1	235336038	235336038	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	ttcttgaagtttttcttgaaGaattgtgatgcgttcggcac	10	6	2	4			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	1	235336038	235336038	G	C	SNP	ARID4B	ENST00000264183	human	ensembl	69_37n	-1	known	missense	c.3706	p.L1236V	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267	85	0	0	75	22	22.68	-	-	-	C	235336038	G	C	235336038	3	2	898	1	0	0	0	0	1	0	0	0	922	942	33	2	240	2	ARID4B	1	235336038	Missense_Mutation	SNP	G	TCGA-EW-A1OX-01A-11D-A142-09	208228903	235336038	13914583	2	73120										
SCN1A	0	genome.wustl.edu	37	chr2	166850700	166850700	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	caaaatcaaaaatattccatCcaatggtaaaataataatgg	4	6	1	0			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	2	166850700	166850700	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4808	p.G1603A	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	56	0	0	24	17	41.46	-	-	-	G	166850700	C	G	166850700	3	3	898	1	0	0	0	0	1	0	0	0	14002	855	30	2	1229	2	SCN1A	2	166850700	Missense_Mutation	SNP	C	TCGA-EW-A1OX-01A-11D-A142-09		166850700	76348673	3	73121										
TIGIT	0	genome.wustl.edu	37	chr3	114012875	114012875	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	tttcagtggcagaagaggccAcatctgcttcctgtaggccc	11	12	2	2			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	3	114012875	114012875	A	T	SNP	TIGIT	ENST00000481065	human	ensembl	69_37n	1	putative	silent	c.168	p.P56	0.979	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	TIGIT	HGNC	ENSG00000181847	41	0	0	17	14	45.16	-	-	-	T	114012875	A	T	114012875	2	4	898	1	0	0	0	0	0	0	0	1	15997	174	6	5		5	TIGIT	3	114012875	Silent	SNP	A	TCGA-EW-A1OX-01A-11D-A142-09		114012875	84009555	4	73122										
SNX18	0	genome.wustl.edu	37	chr5	53815627	53815628	+	Frame_Shift_Ins	INS	-	-	A													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	ggaatgagtactctttctcgINSaaggttcaaagagtaccttt							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	5	53815627	53815628	-	A	INS	SNX18	ENST00000326277	human	ensembl	69_37n	1	known	frame_shift_ins	c.1845_1846	p.V616fs	0.000:0.000	pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996	26	0	0	10	4	28.57	-	-	-	A	53815628	-	A	53815627	7	5	898	1	0	1	1	0	0	0	0	0	14978	1045	37	0	1847	0	SNX18	5	53815627	Frame_Shift_Ins	INS	-	TCGA-EW-A1OX-01A-11D-A142-09		53815627	127099633	5	73123										
NXPH1	0	genome.wustl.edu	37	chr7	8791227	8791227	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	actctgcaactatgacccttCaaaaacctgttaccaggagc	6	13	2	1			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	7	8791227	8791227	C	T	SNP	NXPH1	ENST00000405863	human	ensembl	69_37n	1	known	missense	c.644	p.S215L	1.000	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH1	HGNC	ENSG00000122584	32	0	0	6	9	60	-	-	-	T	8791227	C	T	8791227	3	4	898	1	0	0	0	0	1	0	0	0	10863	838	29	2	650	2	NXPH1	7	8791227	Missense_Mutation	SNP	C	TCGA-EW-A1OX-01A-11D-A142-09		8791227	150347436	6	73124										
INPP5E	0	genome.wustl.edu	37	chr9	139328559	139328559	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	gtcggcctcggctgggagcaGgaactcgtccaggctgggcg							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	9	139328559	139328559	G	-	DEL	INPP5E	ENST00000371712	human	ensembl	69_37n	-1	known	frame_shift_del	c.964	p.L322fs	0.995	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384	17	0	0	14	2	12.5	-	-	-	-	139328559	G	-	139328559	7	5	898	1	0	1	0	1	0	0	0	0	7811	991	35	0	1002	0	INPP5E	9	139328559	Frame_Shift_Del	DEL	G	TCGA-EW-A1OX-01A-11D-A142-09		139328559	1884872	7	73125										
GATA3	0	genome.wustl.edu	37	chr10	8115985	8115986	+	Frame_Shift_Ins	INS	-	-	C													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	atggtcaccgccatgggttaINSgagccctgctcgatgctcac							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	10	8115985	8115986	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1334_1335	p.*445fs	1.000:1.000	NULL	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	27	0	0	14	7	33.33	-	-	-	C	8115986	-	C	8115985	7	5	898	1	0	1	1	0	0	0	0	0	6305	433	15	0	1352	0	GATA3	10	8115985	Frame_Shift_Ins	INS	-	TCGA-EW-A1OX-01A-11D-A142-09		8115985	127418762	8	73126										
DLG5	0	genome.wustl.edu	37	chr10	79567580	79567580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	tagaagctgtcaccaggcagGcccttggccttcgtgaactc	11	13	1	2			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	10	79567580	79567580	G	A	SNP	DLG5	ENST00000372391	human	ensembl	69_37n	-1	known	silent	c.4770	p.G1590	0.993	superfamily_PDZ	pfam_PDZ,pfam_DUF622,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG5	HGNC	ENSG00000151208	31	0	0	6	7	53.85	-	-	-	A	79567580	G	A	79567580	2	1	898	1	0	0	0	0	0	0	0	1	4594	1190	42	4		4	DLG5	10	79567580	Silent	SNP	G	TCGA-EW-A1OX-01A-11D-A142-09	71451595	79567580	55967167	9	73127										
MUC5B	0	genome.wustl.edu	37	chr11	1266710	1266710	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	ggccccaataaccacggtggTgaccatgggctgtgagcccc	13	14	0	2			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	11	1266710	1266710	T	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8609	p.V2870E	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	56	0	0	27	32	54.24	-	-	-	A	1266710	T	A	1266710	3	1	898	1	0	0	0	0	1	0	0	0	10051	1696	59	5	8731	5	MUC5B	11	1266710	Missense_Mutation	SNP	T	TCGA-EW-A1OX-01A-11D-A142-09		1266710	133739806	10	73128										
CHEK1	0	genome.wustl.edu	37	chr11	125505402	125505402	+	Frame_Shift_Del	DEL	G	G	-													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	aaaaacatacctcaacccttGgaaaaaaatcgattctgctc							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	11	125505402	125505402	G	-	DEL	CHEK1	ENST00000438015	human	ensembl	69_37n	1	known	frame_shift_del	c.692	p.W231fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554	24	0	0	7	2	22.22	-	-	-	-	125505402	G	-	125505402	7	5	898	1	0	1	0	1	0	0	0	0	3363	1357	47	0	714	0	CHEK1	11	125505402	Frame_Shift_Del	DEL	G	TCGA-EW-A1OX-01A-11D-A142-09	124238692	125505402	9501114	11	73129										
SENP1	0	genome.wustl.edu	37	chr12	48468348	48468348	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	gagtttccatttttaaacagTgagtctttcaaagtattttt	6	5	2	1			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	12	48468348	48468348	T	A	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	silent	c.699	p.S233	0.996	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	55	0	0	29	21	42	-	-	-	A	48468348	T	A	48468348	2	1	898	1	0	0	0	0	0	0	0	1	14134	1683	59	5		5	SENP1	12	48468348	Silent	SNP	T	TCGA-EW-A1OX-01A-11D-A142-09		48468348	85383547	12	73130										
LUM	0	genome.wustl.edu	37	chr12	91502360	91502360	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	cagagatttgggaagtgggcCcacagactctgtcaggttgt	14	8	2	2			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	12	91502360	91502360	C	G	SNP	LUM	ENST00000266718	human	ensembl	69_37n	-1	known	missense	c.397	p.G133R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329	43	0	0	18	10	35.71	-	-	-	G	91502360	C	G	91502360	3	3	898	1	0	0	0	0	1	0	0	0	9151	623	22	4	627	4	LUM	12	91502360	Missense_Mutation	SNP	C	TCGA-EW-A1OX-01A-11D-A142-09	43034012	91502360	42349535	13	73131										
MYH1	0	genome.wustl.edu	37	chr17	10406521	10406521	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	agctggattttggttttgatTagctggtcacacctttcctc	9	9	1	1			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	17	10406521	10406521	T	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.2736	p.L912	0.991	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	144	0	0	68	19	21.84	-	-	-	A	10406521	T	A	10406521	2	1	898	1	0	0	0	0	0	0	0	1	10101	1741	61	5		5	MYH1	17	10406521	Silent	SNP	T	TCGA-EW-A1OX-01A-11D-A142-09		10406521	70788689	14	73132										
KCNH6	0	genome.wustl.edu	37	chr17	61611456	61611456	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	cggcgtggggcctgcagctaTacctgcagtcccctcactgt	12	15	1	0			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	17	61611456	61611456	T	C	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	silent	c.885	p.Y295	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	32	0	0	52	7	11.86	-	-	-	C	61611456	T	C	61611456	2	2	898	1	0	0	0	0	0	0	0	1	8090	1413	49	5		5	KCNH6	17	61611456	Silent	SNP	T	TCGA-EW-A1OX-01A-11D-A142-09	51204935	61611456	19583754	15	73133										
TPM4	0	genome.wustl.edu	37	chr19	16186899	16186899	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	tccagaagaaactaaaagggAcagaggacgagctggataaa	12	6	0	3			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	19	16186899	16186899	A	C	SNP	TPM4	ENST00000344824	human	ensembl	69_37n	1	known	missense	c.157	p.T53P	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM4	HGNC	ENSG00000167460	25	0	0	10	8	44.44	-	-	-	C	16186899	A	C	16186899	3	2	898	1	0	0	0	0	1	0	0	0	16504	275	10	5	163	5	TPM4	19	16186899	Missense_Mutation	SNP	A	TCGA-EW-A1OX-01A-11D-A142-09		16186899	42942084	16	73134										
PAK7	0	genome.wustl.edu	37	chr20	9523320	9523320	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	tcattgaagtaggggggctcGccatcaatcatttctatcac	9	10	5	1			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	20	9523320	9523320	G	A	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	silent	c.1917	p.G639	0.007	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	28	0	0	16	12	42.86	-	-	-	A	9523320	G	A	9523320	2	1	898	1	0	0	0	0	0	0	0	1	11478	1074	38	1		1	PAK7	20	9523320	Silent	SNP	G	TCGA-EW-A1OX-01A-11D-A142-09		9523320	53502200	17	73135										
SIM2	0	genome.wustl.edu	37	chr21	38095375	38095375	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	tagagaggtcgttctttcttCgaatgaaatgtgtcttggcg	12	6	3	2			TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	21	38095375	38095375	C	T	SNP	SIM2	ENST00000290399	human	ensembl	69_37n	1	known	nonsense	c.487	p.R163*	0.998	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM2	HGNC	ENSG00000159263	46	0	0	15	11	42.31	-	-	-	T	38095375	C	T	38095375	4	4	898	1	0	0	0	0	0	1	0	0	14413	876	31	1	505	1	SIM2	21	38095375	Nonsense_Mutation	SNP	C	TCGA-EW-A1OX-01A-11D-A142-09		38095375	10034520	18	73136										
BRD1	0	genome.wustl.edu	37	chr22	50187683	50187683	+	Frame_Shift_Del	DEL	T	T	-													0.105263157894737	2	0.682517828143704	1.67441860465116	1.95348837209302	1.46511627906977	1	1	0	agccctcaccgtggcttaccTtcctcgcccgcctccggccc							TCGA-EW-A1OX-01A-11D-A142-09	TCGA-EW-A1OX-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7828f9cf-aa93-44a0-8070-efdf90a677f0	f4652fab-76cf-4fde-8a9d-9e11fa8e7228	22	50187683	50187683	T	-	DEL	BRD1	ENST00000216267	human	ensembl	69_37n	-1	known	frame_shift_del	c.2358	p.V787fs	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	17	0	0	4	2	33.33	-	-	-	-	50187683	T	-	50187683	7	5	898	1	0	1	0	1	0	0	0	0	1509	1623	56	0	846	0	BRD1	22	50187683	Frame_Shift_Del	DEL	T	TCGA-EW-A1OX-01A-11D-A142-09		50187683	1116883	19	73137										
CDCA8	0	genome.wustl.edu	37	chr1	38171237	38171237	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ctgtgccagtgggcggcggaGaggtgaagtatttccaaggg	18	7	0	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	1	38171237	38171237	G	A	SNP	CDCA8	ENST00000327331	human	ensembl	69_37n	1	known	missense	c.709	p.E237K	1.000	pfam_Cell_div_borealin	pfam_Cell_div_borealin,pfam_Borealin-like_N	-	no_errors	CDCA8	HGNC	ENSG00000134690	23	0	0	3	19	86.36	-	-	-	A	38171237	G	A	38171237	3	1	899	1	0	0	0	0	1	0	0	0	3121	943	33	2	739	2	CDCA8	1	38171237	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		38171237	211079384	1	73138										
URB2	0	genome.wustl.edu	37	chr1	229773865	229773865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgttggagttgccagctctcGcgggacatgatcagtctttt	12	9	3	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	1	229773865	229773865	G	A	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.3505	p.A1169T	0.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	54	0	0	123	28	18.54	-	-	-	A	229773865	G	A	229773865	3	1	899	1	0	0	0	0	1	0	0	0	17122	1087	38	1	3515	1	URB2	1	229773865	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	191602628	229773865	19476756	2	73139										
OR2C3	0	genome.wustl.edu	37	chr1	247695329	247695329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gcggtaggagcatggtgagcGtggagcccaccatgctggtg	18	9	0	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	1	247695329	247695329	G	A	SNP	OR2C3	ENST00000366487	human	ensembl	69_37n	-1	known	missense	c.485	p.T162M	0.043	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2C3	HGNC	ENSG00000196242	30	0	0	43	14	24.56	-	-	-	A	247695329	G	A	247695329	3	1	899	1	0	0	0	0	1	0	0	0	11066	1145	40	1	481	1	OR2C3	1	247695329	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	17921464	247695329	1555292	3	73140										
HEATR5B	0	genome.wustl.edu	37	chr2	37267505	37267505	+	Frame_Shift_Del	DEL	C	C	-													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gccaacagtagttattatagCacccaagcatcgacccaaac							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	2	37267505	37267505	C	-	DEL	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	frame_shift_del	c.3013	p.A1005fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	30	0	0	16	15	45.45	-	-	-	-	37267505	C	-	37267505	7	5	899	1	0	1	0	1	0	0	0	0	7083	710	25	0	3270	0	HEATR5B	2	37267505	Frame_Shift_Del	DEL	C	TCGA-EW-A1OY-01A-11D-A142-09		37267505	205931868	4	73141										
CHRNA1	0	genome.wustl.edu	37	chr2	175618974	175618974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	atggccacgacagagccgtcGtaggtccaggtgcccagctt	13	13	0	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	2	175618974	175618974	G	A	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	silent	c.588	p.Y196	0.730	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	38	0	0	30	11	26.83	-	-	-	A	175618974	G	A	175618974	2	1	899	1	0	0	0	0	0	0	0	1	3410	1140	40	1		1	CHRNA1	2	175618974	Silent	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	138351469	175618974	67580399	5	73142										
DNAH7	0	genome.wustl.edu	37	chr2	196729475	196729475	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tttgcttatattgttgtattCttctaggtgaatttctacta	6	5	3	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	2	196729475	196729475	C	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.6904	p.E2302*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	95	0	0	39	19	32.76	-	-	-	A	196729475	C	A	196729475	4	1	899	1	0	0	0	0	0	1	0	0	4641	922	32	2	5270	2	DNAH7	2	196729475	Nonsense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	21110501	196729475	46469898	6	73143										
PASK	0	genome.wustl.edu	37	chr2	242063401	242063401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	cggtgagctcagcagcggtaGagtgggtggagccgggcagg	21	8	1	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	2	242063401	242063401	G	C	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.2867	p.S956C	0.979	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	57	0	0	19	9	32.14	-	-	-	C	242063401	G	C	242063401	3	2	899	1	0	0	0	0	1	0	0	0	11545	942	33	2	1136	2	PASK	2	242063401	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	45333926	242063401	1135972	7	73144										
GSK3B	0	genome.wustl.edu	37	chr3	119812255	119812255	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ggcttgcagctctccgcaaaGgaggtggttctgggccgccc	15	13	2	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	3	119812255	119812255	G	C	SNP	GSK3B	ENST00000316626	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701	18	0	0	26	6	18.75	-	-	-	C	119812255	G	C	119812255	2	2	899	1	0	0	0	0	0	0	0	1	6875	987	35	4		4	GSK3B	3	119812255	Silent	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		119812255	78210175	8	73145										
P2RY13	0	genome.wustl.edu	37	chr3	151045982	151045982	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ttgattttgcagtctacagtCagtcttattgttggtttgac	9	6	3	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	3	151045982	151045982	C	T	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	missense	c.862	p.D288N	0.049	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	119	0	0	60	30	33.33	-	-	-	T	151045982	C	T	151045982	3	4	899	1	0	0	0	0	1	0	0	0	11423	826	29	2	206	2	P2RY13	3	151045982	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	31233727	151045982	46976448	9	73146										
MUC4	0	genome.wustl.edu	37	chr3	195511780	195511780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aagtgtcggtgacaagaagaGggatggcgtgacctgtggat	17	5	0	4			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	3	195511780	195511780	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.6671	p.P2224L	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	18	0	0	193	51	20.9	-	-	-	A	195511780	G	A	195511780	3	1	899	1	0	0	0	0	1	0	0	0	10050	1000	35	4		4	MUC4	3	195511780	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	44465798	195511780	2510650	10	73147										
KIAA0232	0	genome.wustl.edu	37	chr4	6863905	6863905	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gtgctgttcatccagctccgGtgatgctgatggggagagtt	15	8	1	3			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	4	6863905	6863905	G	C	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	1	known	missense	c.1796	p.G599A	0.988	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	79	0	0	33	6	15.38	-	-	-	C	6863905	G	C	6863905	3	2	899	1	0	0	0	0	1	0	0	0	8215	1261	44	4	1814	4	KIAA0232	4	6863905	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		6863905	184290371	11	73148										
ADH7	0	genome.wustl.edu	37	chr4	100341943	100341943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	agacgacgcaagtggaaccaGgtttgacctgtggagaggaa	15	7	0	3			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	4	100341943	100341943	G	A	SNP	ADH7	ENST00000209665	human	ensembl	69_37n	-1	known	missense	c.608	p.P203L	0.924	superfamily_GroES-like	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344	22	0	0	30	10	25	-	-	-	A	100341943	G	A	100341943	3	1	899	1	0	0	0	0	1	0	0	0	313	1000	35	4	568	4	ADH7	4	100341943	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	93478038	100341943	90812333	12	73149										
MAP3K1	0	genome.wustl.edu	37	chr5	56180496	56180496	+	Frame_Shift_Del	DEL	T	T	-													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gtttatttgaaacaggtgacTtatgtcagaaacacatcttc							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	5	56180496	56180496	T	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.3825	p.Y1276fs	0.460	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	64	0	0	8	31	77.5	-	-	-	-	56180496	T	-	56180496	7	5	899	1	0	1	0	1	0	0	0	0	9314	1596	56	0	3887	0	MAP3K1	5	56180496	Frame_Shift_Del	DEL	T	TCGA-EW-A1OY-01A-11D-A142-09		56180496	124734764	13	73150										
HNRNPA0	0	genome.wustl.edu	37	chr5	137089510	137089510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gccgaatcctcccgggacacCgcccgcttcagctccacagt	9	19	1	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	5	137089510	137089510	C	T	SNP	HNRNPA0	ENST00000314940	human	ensembl	69_37n	-1	known	silent	c.246	p.A82	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA0	HGNC	ENSG00000177733	16	0	0	14	10	41.67	-	-	-	T	137089510	C	T	137089510	2	4	899	1	0	0	0	0	0	0	0	1	7307	639	23	1		1	HNRNPA0	5	137089510	Silent	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	80909014	137089510	43825750	14	73151										
PCDHGA7	0	genome.wustl.edu	37	chr5	140764593	140764593	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gtcttcctagccttcgtcctCgtactgctggcgctcaggct	10	15	2	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	5	140764593	140764593	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	69_37n	1	known	silent	c.2127	p.L709	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537	8	0	0	8	28	77.78	-	-	-	T	140764593	C	T	140764593	2	4	899	1	0	0	0	0	0	0	0	1	11632	871	31	1		1	PCDHGA7	5	140764593	Silent	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	3675083	140764593	40150667	15	73152										
MRPS18B	0	genome.wustl.edu	37	chr6	30587568	30587568	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ggtgtacccccacagcggacTcggaagacatgtattgtgag	13	10	0	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	6	30587568	30587568	T	A	SNP	MRPS18B	ENST00000259873	human	ensembl	69_37n	1	known	silent	c.270	p.T90	1.000	superfamily_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568	14	0	0	16	7	30.43	-	-	-	A	30587568	T	A	30587568	2	1	899	1	0	0	0	0	0	0	0	1	9901	1538	54	5		5	MRPS18B	6	30587568	Silent	SNP	T	TCGA-EW-A1OY-01A-11D-A142-09		30587568	140527499	16	73153										
COL12A1	0	genome.wustl.edu	37	chr6	75904624	75904624	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	atgacatatgaacagtatttTcatctataattttaaaattc	3	5	2	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	6	75904624	75904624	T	A	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.113	p.E38V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	57	0	0	20	18	47.37	-	-	-	A	75904624	T	A	75904624	3	1	899	1	0	0	0	0	1	0	0	0	3699	1783	62	5	9334	5	COL12A1	6	75904624	Missense_Mutation	SNP	T	TCGA-EW-A1OY-01A-11D-A142-09	45317056	75904624	95210443	17	73154										
ZNF292	0	genome.wustl.edu	37	chr6	87970171	87970171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aacccggtcgaatctcctccGacacatttttaataagcata	5	12	1	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	6	87970171	87970171	G	T	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	missense	c.6824	p.R2275L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	41	0	0	15	6	28.57	-	-	-	T	87970171	G	T	87970171	3	4	899	1	0	0	0	0	1	0	0	0	17922	1058	37	3	6854	3	ZNF292	6	87970171	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	12065547	87970171	83144896	18	73155										
C6orf118	0	genome.wustl.edu	37	chr6	165711541	165711541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ccctggcgagatccatgtccGccgtcttcaccggcctctgc	10	18	3	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	6	165711541	165711541	G	A	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.986	p.A329V	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	39	0	0	27	24	46.15	-	-	-	A	165711541	G	A	165711541	3	1	899	1	0	0	0	0	1	0	0	0	2344	1087	38	1	443	1	C6orf118	6	165711541	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	77741370	165711541	5403526	19	73156										
UPP1	0	genome.wustl.edu	37	chr7	48147844	48147844	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgtgtgtcaccctcctgaacCgcctggaaggggaccagatc	12	13	1	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	7	48147844	48147844	C	T	SNP	UPP1	ENST00000331803	human	ensembl	69_37n	1	known	missense	c.823	p.R275C	1.000	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP1	HGNC	ENSG00000183696	36	0	0	10	4	26.67	-	-	-	T	48147844	C	T	48147844	3	4	899	1	0	0	0	0	1	0	0	0	17109	652	23	1	849	1	UPP1	7	48147844	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09		48147844	110990819	20	73157										
ZPBP	0	genome.wustl.edu	37	chr7	50070741	50070741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	cagctctttgcattttaacgCgatggcattcagacttaagt	8	9	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	7	50070741	50070741	C	T	SNP	ZPBP	ENST00000046087	human	ensembl	69_37n	-1	known	missense	c.653	p.R218H	0.978	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like	-	no_errors	ZPBP	HGNC	ENSG00000042813	51	0	0	11	21	63.64	-	-	-	T	50070741	C	T	50070741	3	4	899	1	0	0	0	0	1	0	0	0	18312	768	27	1	418	1	ZPBP	7	50070741	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	1922897	50070741	109067922	21	73158										
GIGYF1	0	genome.wustl.edu	37	chr7	100284283	100284283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	caatctcaccagggctggcgGagcgccagcggtcgccgtct	14	15	2	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	7	100284283	100284283	G	A	SNP	GIGYF1	ENST00000275732	human	ensembl	69_37n	-1	known	missense	c.683	p.S228F	0.591	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	8	0	0	10	11	52.38	-	-	-	A	100284283	G	A	100284283	3	1	899	1	0	0	0	0	1	0	0	0	6429	1174	41	2	2496	2	GIGYF1	7	100284283	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	50213542	100284283	58854380	22	73159										
MLL3	0	genome.wustl.edu	37	chr7	151891154	151891154	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ctgtggcaatggagttggctGagtgttcgcaggactaagta	15	6	0	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	7	151891154	151891154	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.4600	p.Q1534*	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	82	0	0	21	42	66.67	-	-	-	A	151891154	G	A	151891154	4	1	899	1	0	0	0	0	0	1	0	0	9693	1299	45	2	10251	2	MLL3	7	151891154	Nonsense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	51606871	151891154	7247509	23	73160										
WDR67	0	genome.wustl.edu	37	chr8	124113134	124113134	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ttgagattgggagcctcgatGaaggaattagctcatcagca	12	7	2	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	8	124113134	124113134	G	T	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	nonsense	c.919	p.E307*	0.953	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	67	0	0	78	33	29.73	-	-	-	T	124113134	G	T	124113134	4	4	899	1	0	0	0	0	0	1	0	0	17415	1291	45	2	945	2	WDR67	8	124113134	Nonsense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		124113134	22250888	24	73161										
KCNV2	0	genome.wustl.edu	37	chr9	2718185	2718186	+	In_Frame_Ins	INS	-	-	CTT													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gaggagcagacagacgaataINScttcttcgaccgcgacccgg							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	9	2718185	2718186	-	CTT	INS	KCNV2	ENST00000382082	human	ensembl	69_37n	1	known	in_frame_ins	c.446_447	p.152in_frame_insF	1.000:1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	16	0	0	6	2	25	-	-	-	CTT	2718186	-	CTT	2718185	7	5	899	1	0	1	1	0	0	0	0	0	8149	391	14	0	448	0	KCNV2	9	2718185	In_Frame_Ins	INS	-	TCGA-EW-A1OY-01A-11D-A142-09		2718185	138495246	25	73162										
LARP4B	0	genome.wustl.edu	37	chr10	871204	871204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aggactttctaataacccagGtcccctctctgcactaggaa	7	13	2	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	10	871204	871204	G	C	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.1285	p.P429A	0.996	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	44	0	0	29	5	14.71	-	-	-	C	871204	G	C	871204	3	2	899	1	0	0	0	0	1	0	0	0	8685	1261	44	4	955	4	LARP4B	10	871204	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		871204	134663543	26	73163										
PIK3AP1	0	genome.wustl.edu	37	chr10	98362157	98362157	+	Splice_Site	DEL	T	T	-													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	cctcagggacttcattatccTacagcaaagaagatgagaaa							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	10	98362157	98362157	T	-	DEL	PIK3AP1	ENST00000339364	human	ensembl	69_37n	-1	known	splice_site_del	c.2242-2	e16-2	0.984	-	-	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	46	0	0	15	2	11.76	-	-	-	-	98362157	T	-	98362157	8	5	899	1	0	1	0	1	0	0	1	0	11982	1536	53	0	185	0	PIK3AP1	10	98362157	Splice_Site	DEL	T	TCGA-EW-A1OY-01A-11D-A142-09	97490953	98362157	37172590	27	73164										
PCGF6	0	genome.wustl.edu	37	chr10	105073972	105073972	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgcatcacctattgcacgtcGgatttcccttagagtttgat	8	10	1	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	10	105073972	105073972	G	C	SNP	PCGF6	ENST00000369847	human	ensembl	69_37n	-1	known	missense	c.967	p.R323G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	39	0	0	43	12	21.43	-	-	-	C	105073972	G	C	105073972	3	2	899	1	0	0	0	0	1	0	0	0	11651	1124	39	3	93	3	PCGF6	10	105073972	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	6711815	105073972	30460775	28	73165										
OR5AR1	0	genome.wustl.edu	37	chr11	56431496	56431496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aggttttgtggatgctgagtGctatgtcctggcagccatgg	15	7	0	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	11	56431496	56431496	G	A	SNP	OR5AR1	ENST00000302969	human	ensembl	69_37n	1	known	missense	c.335	p.C112Y	0.067	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	127	0	0	46	28	37.84	-	-	-	A	56431496	G	A	56431496	3	1	899	1	0	0	0	0	1	0	0	0	11218	1319	46	4	337	4	OR5AR1	11	56431496	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		56431496	78575020	29	73166										
OR9G1	0	genome.wustl.edu	37	chr11	56468576	56468576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gggctacctcaaagccttctCcacatgctcctcccacctga	6	18	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	11	56468576	56468576	C	T	SNP	OR9G1	ENST00000312153	human	ensembl	69_37n	1	known	missense	c.713	p.S238F	1.000	pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914	126	0	0	75	18	19.35	-	-	-	T	56468576	C	T	56468576	3	4	899	1	0	0	0	0	1	0	0	0	11323	855	30	2	715	2	OR9G1	11	56468576	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	37080	56468576	78537940	30	73167										
TFCP2	0	genome.wustl.edu	37	chr12	51501053	51501053	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ttgtctcataggaaggctgaTatttctccttttcatgaggt	9	7	3	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	12	51501053	51501053	T	A	SNP	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	missense	c.794	p.Y265F	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	121	0	0	126	26	17.11	-	-	-	A	51501053	T	A	51501053	3	1	899	1	0	0	0	0	1	0	0	0	15890	1406	49	5	750	5	TFCP2	12	51501053	Missense_Mutation	SNP	T	TCGA-EW-A1OY-01A-11D-A142-09		51501053	82350842	31	73168										
SRRM4	0	genome.wustl.edu	37	chr12	119419761	119419761	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aaccttcaaagcggtggccaCcccccgtcccgagagcatca	9	17	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	12	119419761	119419761	C	A	SNP	SRRM4	ENST00000267260	human	ensembl	69_37n	1	known	missense	c.74	p.T25N	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	51	0	0	14	11	44	-	-	-	A	119419761	C	A	119419761	3	1	899	1	0	0	0	0	1	0	0	0	15262	507	18	4	76	4	SRRM4	12	119419761	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	67918708	119419761	14432134	32	73169										
RIMBP2	0	genome.wustl.edu	37	chr12	130927144	130927144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	cttgccaaccgcgactcgttGtcctgcacaaagtccacgaa	8	15	0	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	12	130927144	130927144	G	T	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.702	p.D234E	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	20	0	0	23	10	30.3	-	-	-	T	130927144	G	T	130927144	3	4	899	1	0	0	0	0	1	0	0	0	13447	1368	48	4	2504	4	RIMBP2	12	130927144	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	11507383	130927144	2924751	33	73170										
TRPC4	0	genome.wustl.edu	37	chr13	38248466	38248466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	atggatgtagtcctgaagtcCgccatcccacatctgtttaa	8	11	1	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	13	38248466	38248466	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.1273	p.G425R	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	136	0	0	36	33	47.83	-	-	-	T	38248466	C	T	38248466	3	4	899	1	0	0	0	0	1	0	0	0	16676	661	23	1	1703	1	TRPC4	13	38248466	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09		38248466	76921412	34	73171										
CYP46A1	0	genome.wustl.edu	37	chr14	100173036	100173036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	agaaggctgagcagctggtgGagattctagaagccaaggca	15	7	1	4			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	14	100173036	100173036	G	A	SNP	CYP46A1	ENST00000261835	human	ensembl	69_37n	1	known	missense	c.496	p.E166K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530	44	0	0	18	5	21.74	-	-	-	A	100173036	G	A	100173036	3	1	899	1	0	0	0	0	1	0	0	0	4213	1175	41	2	518	2	CYP46A1	14	100173036	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		100173036	7176504	35	73172										
FAM82A2	0	genome.wustl.edu	37	chr15	41028781	41028781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	agttcttccaggtccttctgGatagccaaatcctagggaga	10	10	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	15	41028781	41028781	G	A	SNP	FAM82A2	ENST00000558232	human	ensembl	69_37n	-1	novel	missense	c.877	p.P293S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM82A2	HGNC	ENSG00000137824	57	0	0	35	19	35.19	-	-	-	A	41028781	G	A	41028781	3	1	899	1	0	0	0	0	1	0	0	0	5676	1164	41	2	45	2	FAM82A2	15	41028781	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		41028781	61502611	36	73173										
EFTUD1	0	genome.wustl.edu	37	chr15	82450087	82450087	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	catccaggcatcgctgaaggTggacttctcctgctgtgact	11	12	1	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	15	82450087	82450087	T	C	SNP	EFTUD1	ENST00000268206	human	ensembl	69_37n	-1	known	missense	c.1997	p.H666R	1.000	superfamily_Elongation_fac_G/III/V	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Elongation_fac_G/III/V,superfamily_Transl_elong_init/rib_B-barrel,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598	57	0	0	50	12	19.05	-	-	-	C	82450087	T	C	82450087	3	2	899	1	0	0	0	0	1	0	0	0	4995	1696	59	5	1381	5	EFTUD1	15	82450087	Missense_Mutation	SNP	T	TCGA-EW-A1OY-01A-11D-A142-09	41421306	82450087	20081305	37	73174										
BCKDK	0	genome.wustl.edu	37	chr16	31121737	31121737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tacaggatgaaaagctcgtcCgctacttcttggacaagacg	10	10	1	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	16	31121737	31121737	C	T	SNP	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	missense	c.559	p.R187C	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	16	0	0	20	8	28.57	-	-	-	T	31121737	C	T	31121737	3	4	899	1	0	0	0	0	1	0	0	0	1365	652	23	1	581	1	BCKDK	16	31121737	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09		31121737	59233016	38	73175										
TP53	0	genome.wustl.edu	37	chr17	7578275	7578275	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ttccactcggataagatgctGaggaggggccagacctaaga	13	9	0	4			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	17	7578275	7578275	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.574	p.Q192*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	117	0	0	6	33	84.62	-	-	-	A	7578275	G	A	7578275	4	1	899	1	0	0	0	0	0	1	0	0	16477	1299	45	2	720	2	TP53	17	7578275	Nonsense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		7578275	73616935	39	73176										
DNAH2	0	genome.wustl.edu	37	chr17	7640395	7640395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ttactgccaggatggctctcGtcaagcacagtcaaacctga	9	12	3	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	17	7640395	7640395	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.989	p.R330H	0.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	58	0	0	28	4	12.5	-	-	-	A	7640395	G	A	7640395	3	1	899	1	0	0	0	0	1	0	0	0	4638	1145	40	1	1015	1	DNAH2	17	7640395	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	62120	7640395	73554815	40	73177										
MYH1	0	genome.wustl.edu	37	chr17	10416983	10416983	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gccagtttccctgtggtaccGaagtggatcctgatgaattt	11	9	0	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	17	10416983	10416983	G	A	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.765	p.F255	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	78	0	0	7	32	82.05	-	-	-	A	10416983	G	A	10416983	2	1	899	1	0	0	0	0	0	0	0	1	10101	1049	37	1		1	MYH1	17	10416983	Silent	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	2776588	10416983	70778227	41	73178										
LRRC37A3	0	genome.wustl.edu	37	chr17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	agattcgacctccctagaagActcagaaggctgaactggct	10	11	1	5			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	9	0	0	15	8	33.33	-	-	-	T	62892271	A	T	62892271	3	4	899	1	0	0	0	0	1	0	0	0	9059	275	10	5	3847	5	LRRC37A3	17	62892271	Missense_Mutation	SNP	A	TCGA-EW-A1OY-01A-11D-A142-09	52475288	62892271	18302939	42	73179										
RAB37	0	genome.wustl.edu	37	chr17	72736906	72736906	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gcctctgcccctaccccctaGgtgatgcttctgggagacac	10	16	2	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	17	72736906	72736906	G	T	SNP	RAB37	ENST00000392614	human	ensembl	69_37n	1	known	splice_site	c.109-1	e2-1	1.000	-	-	-	no_errors	RAB37	HGNC	ENSG00000172794	23	0	0	19	14	42.42	-	-	-	T	72736906	G	T	72736906	5	4	899	1	0	0	0	0	0	0	1	0	13010	1014	35	4	402	4	RAB37	17	72736906	Splice_Site	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	9844635	72736906	8458304	43	73180										
DSG2	0	genome.wustl.edu	37	chr18	29100768	29100768	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ctgttatttttatgttagatAcattctgatcttgcagaaga	7	5	2	4			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	18	29100768	29100768	A	G	SNP	DSG2	ENST00000261590	human	ensembl	69_37n	1	known	missense	c.219	p.I73M	0.996	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604	45	0	0	17	8	32	-	-	-	G	29100768	A	G	29100768	3	3	899	1	0	0	0	0	1	0	0	0	4812	381	14	5	233	5	DSG2	18	29100768	Missense_Mutation	SNP	A	TCGA-EW-A1OY-01A-11D-A142-09		29100768	48976480	44	73181										
FUT5	0	genome.wustl.edu	37	chr19	5867086	5867086	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tggtagtagcgcaccctggcCgagtccggcttccagttgga	14	12	0	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	19	5867086	5867086	C	T	SNP	FUT5	ENST00000252675	human	ensembl	69_37n	-1	known	silent	c.651	p.S217	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	8	0	0	4	7	63.64	-	-	-	T	5867086	C	T	5867086	2	4	899	1	0	0	0	0	0	0	0	1	6156	639	23	1		1	FUT5	19	5867086	Silent	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09		5867086	53261897	45	73182										
CYP4F8	0	genome.wustl.edu	37	chr19	15730345	15730345	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tcttctacaagaccctgaagCcctggctgggtaagtaactg	10	11	2	2			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	19	15730345	15730345	C	A	SNP	CYP4F8	ENST00000441682	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CYP4F8	HGNC	ENSG00000186526	42	0	0	45	17	27.42	-	-	-	A	15730345	C	A	15730345	1	1	899	0	1	0	0	0	0	0	0	0	4222	739	26	4		4	CYP4F8	19	15730345	RNA	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	9863259	15730345	43398638	46	73183										
HAS1	0	genome.wustl.edu	37	chr19	52217080	52217080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gcagccaggccgcgaaggccGccttggccagtgccacgccc	14	18	0	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	19	52217080	52217080	G	A	SNP	HAS1	ENST00000222115	human	ensembl	69_37n	-1	known	missense	c.1337	p.A446V	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509	12	0	0	3	4	57.14	-	-	-	A	52217080	G	A	52217080	3	1	899	1	0	0	0	0	1	0	0	0	7012	1087	38	1	403	1	HAS1	19	52217080	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	36486735	52217080	6911903	47	73184										
PYGB	0	genome.wustl.edu	37	chr20	25252038	25252038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gcgtgtttccttgactcaatGgctaccttgggcctggcagc	12	12	1	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	20	25252038	25252038	G	A	SNP	PYGB	ENST00000216962	human	ensembl	69_37n	1	known	missense	c.444	p.M148I	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	81	0	0	76	37	32.74	-	-	-	A	25252038	G	A	25252038	3	1	899	1	0	0	0	0	1	0	0	0	12943	1348	47	4	458	4	PYGB	20	25252038	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09		25252038	37773482	48	73185										
DLGAP4	0	genome.wustl.edu	37	chr20	35060467	35060467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gaagcagctgcccatccaccGtgatggcttcagcaccctcc	9	17	1	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	20	35060467	35060467	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.347	p.R116H	0.987	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	33	0	0	46	26	36.11	-	-	-	A	35060467	G	A	35060467	3	1	899	1	0	0	0	0	1	0	0	0	4598	1145	40	1	349	1	DLGAP4	20	35060467	Missense_Mutation	SNP	G	TCGA-EW-A1OY-01A-11D-A142-09	9808429	35060467	27965053	49	73186										
PI4KA	0	genome.wustl.edu	37	chr22	21096642	21096642	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgaaggagctgcgggtcacaAtctggaaccaaacacacgtc	11	11	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	22	21096642	21096642	A	T	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.3615	p.D1205E	0.993	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	19	0	0	8	5	35.71	-	-	-	T	21096642	A	T	21096642	3	4	899	1	0	0	0	0	1	0	0	0	11947	115	4	5	2789	5	PI4KA	22	21096642	Missense_Mutation	SNP	A	TCGA-EW-A1OY-01A-11D-A142-09		21096642	30207924	50	73187										
PI4KA	0	genome.wustl.edu	37	chr22	21096935	21096935	+	Missense_Mutation	SNP	C	C	A													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgcggtcagcttgaacatggCctgcgtgtagtgctgaggat							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	22	21096935	21096935	C	A	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.3574	p.A1192S	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	123	0	0	54	19	26.03	-	-	-	A	21096935	C	A	21096935	3	1	899	1	0	0	0	0	1	0	0	0	11947	739	26	4	2834	4	PI4KA	22	21096935	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	293	21096935	30207631	51	73188	514	2								
PI4KA	0	genome.wustl.edu	37	chr22	21096936	21096936	+	Missense_Mutation	SNP	C	C	A													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gcggtcagcttgaacatggcCtgcgtgtagtgctgaggatg							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	22	21096936	21096936	C	A	SNP	PI4KA	ENST00000255882	human	ensembl	69_37n	-1	known	missense	c.3573	p.Q1191H	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	123	0	0	56	18	24.32	-	-	-	A	21096936	C	A	21096936	3	1	899	1	0	0	0	0	1	0	0	0	11947	680	24	4	2835	4	PI4KA	22	21096936	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	1	21096936	30207630	52	73189	514	2								
WWC3	0	genome.wustl.edu	37	chrX	10066593	10066593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gtagaccgagtcagacttaaTtggcaatatgaagaagccag	11	7	1	4			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	10066593	10066593	T	C	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	1	known	silent	c.705	p.N235	0.939	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	94	0	0	42	21	32.81	-	-	-	C	10066593	T	C	10066593	2	2	899	1	0	0	0	0	0	0	0	1	17510	1490	52	5		5	WWC3	23	10066593	Silent	SNP	T	TCGA-EW-A1OY-01A-11D-A142-09		10066593	145203967	53	73190										
KLHL34	0	genome.wustl.edu	37	chrX	21674415	21674415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ctgctcctcagggcccaggaCgtataagtcccggaggctgc	13	14	1	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	21674415	21674415	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	missense	c.1492	p.V498I	0.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	14	0	0	16	4	20	-	-	-	T	21674415	C	T	21674415	3	4	899	1	0	0	0	0	1	0	0	0	8440	536	19	1	446	1	KLHL34	23	21674415	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	11607822	21674415	133596145	54	73191										
SLC9A7	0	genome.wustl.edu	37	chrX	46508206	46508206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	aaggagagcgggtagatgtgCgcggctctgcccaggaagat	17	8	1	3			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	46508206	46508206	C	T	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	silent	c.1374	p.A458	0.996	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	87	0	0	46	10	17.86	-	-	-	T	46508206	C	T	46508206	2	4	899	1	0	0	0	0	0	0	0	1	14808	755	27	1		1	SLC9A7	23	46508206	Silent	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	24833791	46508206	108762354	55	73192										
PRPS1	0	genome.wustl.edu	37	chrX	106893241	106893241	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	ggagaatccgtttcttacctAttcagccatgtccctttata	6	11	2	1			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	106893241	106893241	A	G	SNP	PRPS1	ENST00000372435	human	ensembl	69_37n	1	known	silent	c.936	p.L312	0.938	tigrfam_Rib-P_diPkinase	pfam_PRibTrfase,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS1	HGNC	ENSG00000147224	90	0	0	44	19	30.16	-	-	-	G	106893241	A	G	106893241	2	3	899	1	0	0	0	0	0	0	0	1	12659	436	16	5		5	PRPS1	23	106893241	Silent	SNP	A	TCGA-EW-A1OY-01A-11D-A142-09	60385035	106893241	48377319	56	73193										
NKRF	0	genome.wustl.edu	37	chrX	118724319	118724319	+	Missense_Mutation	SNP	C	C	T													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	tgacatcttgttgaatgaggCagaattgttaaggataccaa							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	118724319	118724319	C	T	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	missense	c.1114	p.A372T	1.000	smart_Ds-RNA-bd	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	38	0	0	41	7	14.58	-	-	-	T	118724319	C	T	118724319	3	4	899	1	0	0	0	0	1	0	0	0	10519	710	25	4	1007	4	NKRF	23	118724319	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	11831078	118724319	36546241	57	73194	515	2								
NKRF	0	genome.wustl.edu	37	chrX	118724320	118724320	+	Silent	SNP	A	A	C													0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gacatcttgttgaatgaggcAgaattgttaaggataccaat							TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	118724320	118724320	A	C	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	silent	c.1113	p.S371	0.999	smart_Ds-RNA-bd	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	39	0	0	41	7	14.58	-	-	-	C	118724320	A	C	118724320	2	2	899	1	0	0	0	0	0	0	0	1	10519	175	7	5		5	NKRF	23	118724320	Silent	SNP	A	TCGA-EW-A1OY-01A-11D-A142-09	1	118724320	36546240	58	73195	515	2								
AVPR2	0	genome.wustl.edu	37	chrX	153171405	153171405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.087719298245614	5	0.824520108214693	1.12103174603175	1.56944444444444	1.0462962962963	0.265734265734266	0.921589049248625	0	gccgtcccatgctggcgtacCgccatggaagtggggctcac	14	14	1	0			TCGA-EW-A1OY-01A-11D-A142-09	TCGA-EW-A1OY-10A-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	925323a2-ca03-48f4-8c37-1a8a6f8a6daa	0e403dba-b5e9-4232-a8ca-9fa9a26cae1a	X	153171405	153171405	C	T	SNP	AVPR2	ENST00000337474	human	ensembl	69_37n	1	known	missense	c.445	p.R149C	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vprsn_rcpt_V2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895	17	0	0	21	7	25	-	-	-	T	153171405	C	T	153171405	3	4	899	1	0	0	0	0	1	0	0	0	1237	652	23	1	451	1	AVPR2	23	153171405	Missense_Mutation	SNP	C	TCGA-EW-A1OY-01A-11D-A142-09	34447085	153171405	2099155	59	73196										
ZCCHC11	0	genome.wustl.edu	37	chr1	52911474	52911474	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	cttacagcttctctgccaatGagtggataaaaaggggtacc	10	9	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	52911474	52911474	G	A	SNP	ZCCHC11	ENST00000474453	human	ensembl	69_37n	-1	novel	missense	c.355	p.H119Y	0.995	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZCCHC11	HGNC	ENSG00000134744	74	0	0	14	5	26.32	-	-	-	A	52911474	G	A	52911474	3	1	900	1	0	0	0	0	1	0	0	0	17676	1277	45	2	1158	2	ZCCHC11	1	52911474	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		52911474	196339147	1	73197										
DHCR24	0	genome.wustl.edu	37	chr1	55349418	55349418	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gccccgtgcacatgaaggtcTtgctaccctgctccttccat	8	16	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	55349418	55349418	T	G	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.260	p.K87T	1.000	superfamily_FAD-bd_2	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	47	0	0	20	13	39.39	-	-	-	G	55349418	T	G	55349418	3	3	900	1	0	0	0	0	1	0	0	0	4512	1609	56	5	1322	5	DHCR24	1	55349418	Missense_Mutation	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09	2437944	55349418	193901203	2	73198										
DENND1B	0	genome.wustl.edu	37	chr1	197515103	197515103	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gctttggtcattgctgtgttGaacagtgcacctcctttctg	10	10	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	197515103	197515103	G	A	SNP	DENND1B	ENST00000294737	human	ensembl	69_37n	-1	known	missense	c.1046	p.S349L	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047	56	0	0	38	7	15.56	-	-	-	A	197515103	G	A	197515103	3	1	900	1	0	0	0	0	1	0	0	0	4463	1281	45	2	1052	2	DENND1B	1	197515103	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	142165685	197515103	51735518	3	73199										
DTNB	0	genome.wustl.edu	37	chr2	25861883	25861883	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	aatgagtagaaatgactcacGgttgcatcgtttttgtacaa	9	6	1	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	25861883	25861883	G	A	SNP	DTNB	ENST00000356599	human	ensembl	69_37n	-1	known	nonsense	c.148	p.Q50*	1.000	NULL	pfam_EF-hand_dom_typ1	-	no_errors	DTNB	HGNC	ENSG00000138101	83	0	0	42	10	19.23	-	-	-	A	25861883	G	A	25861883	4	1	900	1	0	0	0	0	0	1	0	0	4824	1130	39	1	1807	1	DTNB	2	25861883	Nonsense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		25861883	217337490	4	73200										
PRPF40A	0	genome.wustl.edu	37	chr2	153515699	153515699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tatcatcatcatctgaatctGacccctaaaaaacacaaata	2	11	5	2			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	153515699	153515699	G	A	SNP	PRPF40A	ENST00000410080	human	ensembl	69_37n	-1	known	missense	c.2414	p.S805L	1.000	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504	75	0	0	32	13	28.89	-	-	-	A	153515699	G	A	153515699	3	1	900	1	0	0	0	0	1	0	0	0	12652	1294	45	2	394	2	PRPF40A	2	153515699	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	127653816	153515699	89683674	5	73201										
TMBIM1	0	genome.wustl.edu	37	chr2	219142384	219142384	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ggtgcccgtcatgaagcccaTggcaaaagtctaagggaagg	14	9	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	219142384	219142384	T	C	SNP	TMBIM1	ENST00000258412	human	ensembl	69_37n	-1	known	missense	c.523	p.M175V	0.571	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM1	HGNC	ENSG00000135926	46	0	0	9	12	57.14	-	-	-	C	219142384	T	C	219142384	3	2	900	1	0	0	0	0	1	0	0	0	16076	1464	51	5	432	5	TMBIM1	2	219142384	Missense_Mutation	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09	65626685	219142384	24056989	6	73202										
NGEF	0	genome.wustl.edu	37	chr2	233759478	233759478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gtcctcaccgctcactgacaGccagcacgtccaggacgttg	10	16	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	233759478	233759478	G	T	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	missense	c.977	p.A326D	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	18	0	0	6	4	40	-	-	-	T	233759478	G	T	233759478	3	4	900	1	0	0	0	0	1	0	0	0	10466	971	34	4	1195	4	NGEF	2	233759478	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	14617094	233759478	9439895	7	73203										
TRAF3IP1	0	genome.wustl.edu	37	chr2	239233967	239233967	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gtgattagaatgactggtttCatgaagggcctctacacaga	11	7	2	5			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	239233967	239233967	C	A	SNP	TRAF3IP1	ENST00000373327	human	ensembl	69_37n	1	known	missense	c.144	p.F48L	0.936	NULL	pfam_Microtubule/TRAF3/DISC1-bd	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104	128	0	0	47	11	18.97	-	-	-	A	239233967	C	A	239233967	3	1	900	1	0	0	0	0	1	0	0	0	16536	825	29	2	150	2	TRAF3IP1	2	239233967	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	5474489	239233967	3965406	8	73204										
NDUFB5	0	genome.wustl.edu	37	chr3	179322623	179322623	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	catggcggccatgagtttgtTgcggcgggtttcggttactg	16	8	0	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	3	179322623	179322623	T	G	SNP	NDUFB5	ENST00000259037	human	ensembl	69_37n	1	known	missense	c.20	p.L7W	0.899	pfam_NADH_UbQ_OxRdtase_B5_su	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_errors	NDUFB5	HGNC	ENSG00000136521	46	0	0	59	7	10.61	-	-	-	G	179322623	T	G	179322623	3	3	900	1	0	0	0	0	1	0	0	0	10356	1821	63	5	22	5	NDUFB5	3	179322623	Missense_Mutation	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09		179322623	18699807	9	73205										
BDH2	0	genome.wustl.edu	37	chr4	104013865	104013865	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tttgaatacctgaaaaataaAacaagaggcactattcctaa	5	7	0	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	4	104013865	104013865	A	T	SNP	BDH2	ENST00000506521	human	ensembl	69_37n	-1	known	silent	c.162	p.V54	0.009	NULL	NULL	-	no_errors	BDH2	HGNC	ENSG00000164039	51	0	0	29	6	17.14	-	-	-	T	104013865	A	T	104013865	2	4	900	1	0	0	0	0	0	0	0	1	1395	29	1	5		5	BDH2	4	104013865	Silent	SNP	A	TCGA-EW-A1OZ-01A-11D-A142-09		104013865	87140411	10	73206										
ODZ3	0	genome.wustl.edu	37	chr4	183721007	183721007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tcaacaacgccttctacctgGagaacctgcacttcaccatc	5	16	3	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	4	183721007	183721007	G	A	SNP	ODZ3	ENST00000406950	human	ensembl	69_37n	1	known	missense	c.7603	p.E2535K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c_dom,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ3	HGNC	ENSG00000218336	20	0	0	9	5	35.71	-	-	-	A	183721007	G	A	183721007	3	1	900	1	0	0	0	0	1	0	0	0	10909	1175	41	2	7709	2	ODZ3	4	183721007	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	79707142	183721007	7433269	11	73207										
CUL9	0	genome.wustl.edu	37	chr6	43167709	43167709	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tcctacatcgcctggcctcgAtgcataaggactatgctgtg	10	12	0	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	6	43167709	43167709	A	G	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.3199	p.M1067V	0.000	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	51	0	0	13	21	61.76	-	-	-	G	43167709	A	G	43167709	3	3	900	1	0	0	0	0	1	0	0	0	4092	333	12	5	3249	5	CUL9	6	43167709	Missense_Mutation	SNP	A	TCGA-EW-A1OZ-01A-11D-A142-09		43167709	127947358	12	73208										
ADCYAP1R1	0	genome.wustl.edu	37	chr7	31117711	31117711	+	Frame_Shift_Del	DEL	A	A	-													0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ccgaatcttcaacccagaccAaggtgggtttagcccagtct							TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	31117711	31117711	A	-	DEL	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	1	known	frame_shift_del	c.263	p.V89fs	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	28	0	0	34	7	17.07	-	-	-	-	31117711	A	-	31117711	7	5	900	1	0	1	0	1	0	0	0	0	303	130	5	0	273	0	ADCYAP1R1	7	31117711	Frame_Shift_Del	DEL	A	TCGA-EW-A1OZ-01A-11D-A142-09		31117711	128020952	13	73209										
LMTK2	0	genome.wustl.edu	37	chr7	97823349	97823349	+	Frame_Shift_Del	DEL	T	T	-													0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gactggtgttccccagcaggTgcatcccacggaagacgagg							TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	97823349	97823349	T	-	DEL	LMTK2	ENST00000297293	human	ensembl	69_37n	1	known	frame_shift_del	c.3572	p.V1191fs	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	38	0	0	7	2	20	-	-	-	-	97823349	T	-	97823349	7	5	900	1	0	1	0	1	0	0	0	0	8915	1696	59	0	3614	0	LMTK2	7	97823349	Frame_Shift_Del	DEL	T	TCGA-EW-A1OZ-01A-11D-A142-09	66705638	97823349	61315314	14	73210										
GALNT11	0	genome.wustl.edu	37	chr7	151810418	151810418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ggcgaccatatggatctcccGaaggccaggacaccatgaca	11	13	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	151810418	151810418	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	69_37n	1	known	missense	c.1168	p.E390K	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234	60	0	0	37	9	19.57	-	-	-	A	151810418	G	A	151810418	3	1	900	1	0	0	0	0	1	0	0	0	6259	1059	37	1	1194	1	GALNT11	7	151810418	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	53987069	151810418	7328245	15	73211										
PTPRN2	0	genome.wustl.edu	37	chr7	158109540	158109540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	aaagcttctgcaacgccacgCgcaggcgctgcagggccacg	13	15	1	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	158109540	158109540	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	missense	c.317	p.R106H	0.130	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	13	0	0	15	18	54.55	-	-	-	T	158109540	C	T	158109540	3	4	900	1	0	0	0	0	1	0	0	0	12891	768	27	1	2883	1	PTPRN2	7	158109540	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	6299122	158109540	1029123	16	73212										
DERL1	0	genome.wustl.edu	37	chr8	124042882	124042882	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gaatactgatataagaaataTaaattgaccaaataaagaaa	5	3	0	4			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	8	124042882	124042882	T	C	SNP	DERL1	ENST00000259512	human	ensembl	69_37n	-1	known	silent	c.228	p.L76	0.995	pfam_DER1	pfam_DER1	-	no_errors	DERL1	HGNC	ENSG00000136986	51	0	0	14	21	60	-	-	-	C	124042882	T	C	124042882	2	2	900	1	0	0	0	0	0	0	0	1	4482	1403	49	5		5	DERL1	8	124042882	Silent	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09		124042882	22321140	17	73213										
TRIM32	0	genome.wustl.edu	37	chr9	119460255	119460255	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	agcttgacccagctgacagaCaatctgacagtgctaaagat	9	10	1	5			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	9	119460255	119460255	C	G	SNP	TRIM32	ENST00000373983	human	ensembl	69_37n	1	known	missense	c.234	p.D78E	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401	38	0	0	27	6	18.18	-	-	-	G	119460255	C	G	119460255	3	3	900	1	0	0	0	0	1	0	0	0	16602	477	17	4	236	4	TRIM32	9	119460255	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09		119460255	21753176	18	73214										
KIAA0913	0	genome.wustl.edu	37	chr10	75557625	75557625	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	acacttctacttcgagctggCgaagacagtgctgatcaagg	11	10	2	2			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	75557625	75557625	C	T	SNP	KIAA0913	ENST00000412198	human	ensembl	69_37n	1	known	nonsense	c.1558	p.R520*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0913	HGNC	ENSG00000214655	32	0	0	84	13	13.4	-	-	-	T	75557625	C	T	75557625	4	4	900	1	0	0	0	0	0	1	0	0	8252	768	27	1	3823	1	KIAA0913	10	75557625	Nonsense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09		75557625	59977122	19	73215										
POLR3A	0	genome.wustl.edu	37	chr10	79784451	79784451	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	attttcagcagtccacacttCtttacggtacctataagggt	7	10	2	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	79784451	79784451	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	silent	c.501	p.K167	1.000	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	56	0	0	114	25	17.99	-	-	-	T	79784451	C	T	79784451	2	4	900	1	0	0	0	0	0	0	0	1	12302	912	32	2		2	POLR3A	10	79784451	Silent	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	4226826	79784451	55750296	20	73216										
ATHL1	0	genome.wustl.edu	37	chr11	294635	294635	+	Frame_Shift_Del	DEL	G	G	-													0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	cctggaagttccagctccgaGttccctgggaggactttttc							TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	294635	294635	G	-	DEL	ATHL1	ENST00000409548	human	ensembl	69_37n	1	known	frame_shift_del	c.2100	p.E700fs	0.000	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102	54	0	0	25	9	26.47	-	-	-	-	294635	G	-	294635	7	5	900	1	0	1	0	1	0	0	0	0	1108	1020	36	0	2150	0	ATHL1	11	294635	Frame_Shift_Del	DEL	G	TCGA-EW-A1OZ-01A-11D-A142-09		294635	134711881	21	73217										
ALX4	0	genome.wustl.edu	37	chr11	44289064	44289064	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ctgggcgtagttctcagctcGggtgaggaggggcagctcat	17	9	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	44289064	44289064	G	A	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	nonsense	c.886	p.R296*	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	66	0	0	36	7	16.28	-	-	-	A	44289064	G	A	44289064	4	1	900	1	0	0	0	0	0	1	0	0	558	1124	39	1	357	1	ALX4	11	44289064	Nonsense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	43994429	44289064	90717452	22	73218										
DGKZ	0	genome.wustl.edu	37	chr11	46398099	46398099	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	actgccagccgcttctacagGatcgaccgagcccaggtgag	12	14	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	46398099	46398099	G	A	SNP	DGKZ	ENST00000454345	human	ensembl	69_37n	1	known	silent	c.2751	p.R917	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091	43	0	0	15	10	40	-	-	-	A	46398099	G	A	46398099	2	1	900	1	0	0	0	0	0	0	0	1	4510	1165	41	2		2	DGKZ	11	46398099	Silent	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	2109035	46398099	88608417	23	73219										
AGBL2	0	genome.wustl.edu	37	chr11	47735870	47735870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	taatattggaggtgacggtaCataaagtcttcataaggatc	10	5	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	47735870	47735870	C	T	SNP	AGBL2	ENST00000357610	human	ensembl	69_37n	-1	known	missense	c.63	p.M21I	0.997	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	59	0	0	8	21	72.41	-	-	-	T	47735870	C	T	47735870	3	4	900	1	0	0	0	0	1	0	0	0	376	478	17	4	2713	4	AGBL2	11	47735870	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	1337771	47735870	87270646	24	73220										
CACNA1C	0	genome.wustl.edu	37	chr12	2675590	2675590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tccctgtcccctttccagccGctactggcgccggtggaatc	10	17	0	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	12	2675590	2675590	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.1511	p.R504H	1.000	prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	26	0	0	16	6	27.27	-	-	-	A	2675590	G	A	2675590	3	1	900	1	0	0	0	0	1	0	0	0	2565	1087	38	1	1665	1	CACNA1C	12	2675590	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		2675590	131176305	25	73221										
GXYLT1	0	genome.wustl.edu	37	chr12	42491739	42491739	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	atgaaaaaacacgatattcaAtagatcttgatcaccccatg	5	9	3	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	12	42491739	42491739	A	C	SNP	GXYLT1	ENST00000398675	human	ensembl	69_37n	-1	known	missense	c.961	p.L321V	0.356	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233	86	0	0	46	20	30.3	-	-	-	C	42491739	A	C	42491739	3	2	900	1	0	0	0	0	1	0	0	0	6954	98	4	5	373	5	GXYLT1	12	42491739	Missense_Mutation	SNP	A	TCGA-EW-A1OZ-01A-11D-A142-09	39816149	42491739	91360156	26	73222										
OTX2	0	genome.wustl.edu	37	chr14	57268782	57268782	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ttgactataacctgaagcctGagtataggtcatgggatagg	12	6	1	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	14	57268782	57268782	G	A	SNP	OTX2	ENST00000339475	human	ensembl	69_37n	-1	known	nonsense	c.565	p.Q189*	1.000	pfam_Otx_TF_C,prints_Otx2_TF,prints_Otx_TF	pfam_Otx_TF_C,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Otx2_TF,prints_Otx_TF,pfscan_Homeodomain	-	no_errors	OTX2	HGNC	ENSG00000165588	76	0	0	42	8	15.69	-	-	-	A	57268782	G	A	57268782	4	1	900	1	0	0	0	0	0	1	0	0	11394	1299	45	2	332	2	OTX2	14	57268782	Nonsense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		57268782	50080758	27	73223										
ZNF434	0	genome.wustl.edu	37	chr16	3434862	3434862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ctgttctgctgacaggtctgGagttttccataaaattgaga	10	7	2	2			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	16	3434862	3434862	G	C	SNP	ZNF434	ENST00000576500	human	ensembl	69_37n	-1	known	missense	c.446	p.S149C	0.001	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF434	HGNC	ENSG00000140987	35	0	0	26	5	16.13	-	-	-	C	3434862	G	C	3434862	3	2	900	1	0	0	0	0	1	0	0	0	18004	1161	41	2	1270	2	ZNF434	16	3434862	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		3434862	86919891	28	73224										
TRPV3	0	genome.wustl.edu	37	chr17	3458079	3458079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ttctctggcaggatggcaggGttcccactgggggcagcaac	15	11	1	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	3458079	3458079	G	A	SNP	TRPV3	ENST00000301365	human	ensembl	69_37n	-1	known	silent	c.66	p.N22	0.782	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	33	0	0	4	21	84	-	-	-	A	3458079	G	A	3458079	2	1	900	1	0	0	0	0	0	0	0	1	16693	1252	44	4		4	TRPV3	17	3458079	Silent	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09		3458079	77737131	29	73225										
NLGN2	0	genome.wustl.edu	37	chr17	7320448	7320448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ccacctgcacaacctgcacaCggagctcttcaccaccacca	5	20	2	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	7320448	7320448	C	T	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.1838	p.T613M	0.981	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	12	0	0	9	5	35.71	-	-	-	T	7320448	C	T	7320448	3	4	900	1	0	0	0	0	1	0	0	0	10534	536	19	1	1864	1	NLGN2	17	7320448	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	3862369	7320448	73874762	30	73226										
TP53	0	genome.wustl.edu	37	chr17	7577509	7577509	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ggctcctgacctggagtcttCcagtgtgatgatggtgagga	15	8	1	4			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	7577509	7577509	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.772	p.E258*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	7	20	74.07	-	-	-	A	7577509	C	A	7577509	4	1	900	1	0	0	0	0	0	1	0	0	16477	864	30	2	518	2	TP53	17	7577509	Nonsense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	257061	7577509	73617701	31	73227										
MYO15A	0	genome.wustl.edu	37	chr17	18046135	18046135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	cctggtacacgcatacgtgaGccgccgacgctatctcaagg	11	14	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	18046135	18046135	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.5891	p.S1964N	0.877	smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	28	0	0	34	6	15	-	-	-	A	18046135	G	A	18046135	3	1	900	1	0	0	0	0	1	0	0	0	10135	971	34	4	5981	4	MYO15A	17	18046135	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	10468626	18046135	63149075	32	73228										
WSB1	0	genome.wustl.edu	37	chr17	25637155	25637155	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	ccggtgggtacgatctgtatCttttagccatgatggactgc	12	9	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	25637155	25637155	C	A	SNP	WSB1	ENST00000262394	human	ensembl	69_37n	1	known	missense	c.953	p.S318Y	0.985	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,prints_G-protein_beta_WD-40_rep,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WSB1	HGNC	ENSG00000109046	90	0	0	181	26	12.56	-	-	-	A	25637155	C	A	25637155	3	1	900	1	0	0	0	0	1	0	0	0	17501	913	32	2	979	2	WSB1	17	25637155	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	7591020	25637155	55558055	33	73229										
SLC26A11	0	genome.wustl.edu	37	chr17	78210729	78210729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	cctctccttctctcctagctCgcaacgccctggtggtctcc	7	19	3	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	78210729	78210729	C	T	SNP	SLC26A11	ENST00000361193	human	ensembl	69_37n	1	known	missense	c.739	p.R247C	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045	25	0	0	36	8	17.78	-	-	-	T	78210729	C	T	78210729	3	4	900	1	0	0	0	0	1	0	0	0	14605	884	31	1	761	1	SLC26A11	17	78210729	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	52573574	78210729	2984481	34	73230										
C19orf10	0	genome.wustl.edu	37	chr19	4659991	4659991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	agttttcagagggacatcacTttccctttcaaatgcggctt	8	10	3	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	4659991	4659991	T	G	SNP	C19orf10	ENST00000262947	human	ensembl	69_37n	-1	known	missense	c.394	p.S132R	0.003	pfam_UPF0556	pfam_UPF0556	-	no_errors	C19orf10	HGNC	ENSG00000074842	86	0	0	55	12	17.91	-	-	-	G	4659991	T	G	4659991	3	3	900	1	0	0	0	0	1	0	0	0	1926	1609	56	5	135	5	C19orf10	19	4659991	Missense_Mutation	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09		4659991	54468992	35	73231										
FBN3	0	genome.wustl.edu	37	chr19	8152732	8152732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gacacatggccccatcctccCgcagggtgtagccggctgga	13	15	0	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	8152732	8152732	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.6596	p.R2199Q	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	55	0	0	23	15	39.47	-	-	-	T	8152732	C	T	8152732	3	4	900	1	0	0	0	0	1	0	0	0	5750	652	23	1	1881	1	FBN3	19	8152732	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	3492741	8152732	50976251	36	73232										
CCDC151	0	genome.wustl.edu	37	chr19	11537373	11537373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	catggagtccagccggttctCcaagttgaggctctcgtcct	11	13	2	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	11537373	11537373	C	G	SNP	CCDC151	ENST00000356392	human	ensembl	69_37n	-1	known	missense	c.733	p.E245Q	1.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003	59	0	0	28	6	17.65	-	-	-	G	11537373	C	G	11537373	3	3	900	1	0	0	0	0	1	0	0	0	2811	864	30	2	1086	2	CCDC151	19	11537373	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	3384641	11537373	47591610	37	73233										
FCGBP	0	genome.wustl.edu	37	chr19	40366247	40366247	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gccgcaggcgtccgggccgcCgaaggactcctgctgctctg	15	16	1	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	40366247	40366247	C	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.13987	p.G4663R	0.017	smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	14	0	0	10	5	33.33	-	-	-	G	40366247	C	G	40366247	3	3	900	1	0	0	0	0	1	0	0	0	5824	652	23	3	2258	3	FCGBP	19	40366247	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	28828874	40366247	18762736	38	73234										
KPTN	0	genome.wustl.edu	37	chr19	47983600	47983600	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gacacggacataaccactctGacagcccagagctgagaggc	11	13	1	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	47983600	47983600	G	C	SNP	KPTN	ENST00000338134	human	ensembl	69_37n	-1	known	missense	c.664	p.Q222E	1.000	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162	15	0	0	9	4	30.77	-	-	-	C	47983600	G	C	47983600	3	2	900	1	0	0	0	0	1	0	0	0	8490	1299	45	2	670	2	KPTN	19	47983600	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	7617353	47983600	11145383	39	73235										
NAPA	0	genome.wustl.edu	37	chr19	48018149	48018149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gttcttcactttgcgctccgCctcggccaacagcgccatcg	9	17	2	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	48018149	48018149	C	A	SNP	NAPA	ENST00000263354	human	ensembl	69_37n	-1	known	missense	c.49	p.A17S	1.000	NULL	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402	26	0	0	24	6	20	-	-	-	A	48018149	C	A	48018149	3	1	900	1	0	0	0	0	1	0	0	0	10233	739	26	4	882	4	NAPA	19	48018149	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	34549	48018149	11110834	40	73236										
NOSIP	0	genome.wustl.edu	37	chr19	50060466	50060466	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	aggccgcccgctgaagctccTtctgctcctcgcgccgggtg	13	17	1	1			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	50060466	50060466	T	G	SNP	NOSIP	ENST00000339093	human	ensembl	69_37n	-1	known	missense	c.299	p.K100T	0.800	pirsf_Nitric_oxide_synth-interacting	pirsf_Nitric_oxide_synth-interacting	-	no_errors	NOSIP	HGNC	ENSG00000142546	18	0	0	11	6	35.29	-	-	-	G	50060466	T	G	50060466	3	3	900	1	0	0	0	0	1	0	0	0	10617	1609	56	5	626	5	NOSIP	19	50060466	Missense_Mutation	SNP	T	TCGA-EW-A1OZ-01A-11D-A142-09	2042317	50060466	9068517	41	73237										
ZNF528	0	genome.wustl.edu	37	chr19	52909856	52909856	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	agtgaagagaaaatagcaaaCgatccagacggcagggagtg	14	6	0	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	52909856	52909856	C	T	SNP	ZNF528	ENST00000448954	human	ensembl	69_37n	1	putative	nonsense	c.139	p.R47*	0.000	pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF528	HGNC	ENSG00000167555	76	0	0	60	13	17.81	-	-	-	T	52909856	C	T	52909856	4	4	900	1	0	0	0	0	0	1	0	0	18065	535	19	1	241	1	ZNF528	19	52909856	Nonsense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09	2849390	52909856	6219127	42	73238										
ZNF611	0	genome.wustl.edu	37	chr19	53209818	53209818	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	aaatatgtggagttcaggcaGatgtgaataaaagcttgatc	11	4	1	3			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	53209818	53209818	G	C	SNP	ZNF611	ENST00000319783	human	ensembl	69_37n	-1	known	missense	c.490	p.L164V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020	111	0	0	61	15	19.74	-	-	-	C	53209818	G	C	53209818	3	2	900	1	0	0	0	0	1	0	0	0	18133	933	33	2	1631	2	ZNF611	19	53209818	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	299962	53209818	5919165	43	73239										
SLC12A5	0	genome.wustl.edu	37	chr20	44673645	44673645	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gcaacctcgtggtgggcactCtggcctggccatctccatgg	13	14	2	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	44673645	44673645	C	G	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	1	known	missense	c.1504	p.L502V	0.995	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	44	0	0	42	7	14.29	-	-	-	G	44673645	C	G	44673645	3	3	900	1	0	0	0	0	1	0	0	0	14475	912	32	2	1606	2	SLC12A5	20	44673645	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09		44673645	18351875	44	73240										
CTSZ	0	genome.wustl.edu	37	chr20	57570749	57570749	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	cagtgctcctcgatggcaagGttgtatctggcgcccttccc	11	14	1	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	57570749	57570749	G	C	SNP	CTSZ	ENST00000217131	human	ensembl	69_37n	-1	known	missense	c.867	p.N289K	1.000	smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSZ	HGNC	ENSG00000101160	48	0	0	44	10	18.52	-	-	-	C	57570749	G	C	57570749	3	2	900	1	0	0	0	0	1	0	0	0	4075	1252	44	4	48	4	CTSZ	20	57570749	Missense_Mutation	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	12897104	57570749	5454771	45	73241										
PTK6	0	genome.wustl.edu	37	chr20	62163955	62163955	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	gggtcccccacggacaccacGgcgtacagcgccaggatgtg	14	15	0	0			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	62163955	62163955	G	A	SNP	PTK6	ENST00000217185	human	ensembl	69_37n	-1	known	silent	c.756	p.A252	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	PTK6	HGNC	ENSG00000101213	35	0	0	21	12	36.36	-	-	-	A	62163955	G	A	62163955	2	1	900	1	0	0	0	0	0	0	0	1	12845	1103	39	1		1	PTK6	20	62163955	Silent	SNP	G	TCGA-EW-A1OZ-01A-11D-A142-09	4593206	62163955	861565	46	73242										
PATZ1	0	genome.wustl.edu	37	chr22	31731814	31731814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	tgacaggccaggtgggagcgCagacggtctcgggtggcaaa	18	9	1	2			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	22	31731814	31731814	C	T	SNP	PATZ1	ENST00000266269	human	ensembl	69_37n	-1	known	silent	c.1371	p.L457	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105	38	0	0	19	20	51.28	-	-	-	T	31731814	C	T	31731814	2	4	900	1	0	0	0	0	0	0	0	1	11549	697	25	4		4	PATZ1	22	31731814	Silent	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09		31731814	19572752	47	73243										
ATP11C	0	genome.wustl.edu	37	chrX	138825729	138825729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	8	0.163259177419501	1.96249062265566	2.85174418604651	1.65318503538928	0.649916646820672	1	0	aaatctaaccttcagggttaCagtgaatactaagactgtaa	7	7	2	2			TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	X	138825729	138825729	C	T	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	missense	c.3028	p.V1010I	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	65	0	0	30	9	23.08	-	-	-	T	138825729	C	T	138825729	3	4	900	1	0	0	0	0	1	0	0	0	1125	478	17	4	453	4	ATP11C	23	138825729	Missense_Mutation	SNP	C	TCGA-EW-A1OZ-01A-11D-A142-09		138825729	16444831	48	73244										
ALMS1	0	genome.wustl.edu	37	chr2	73653617	73653617	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	ggttgagtctgacgtcattaCtctggatggcctaaatgaaa	11	7	3	3			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	2	73653617	73653617	C	A	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1274	p.T425N	0.002	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	105	0	0	29	26	47.27	-	-	-	A	73653617	C	A	73653617	3	1	901	1	0	0	0	0	1	0	0	0	535	565	20	4	1296	4	ALMS1	2	73653617	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09		73653617	169545756	1	73245										
DCTN1	0	genome.wustl.edu	37	chr2	74595859	74595859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	gattgattggccataccttgCaaatgagacgaggcatgagc	12	8	0	3			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	2	74595859	74595859	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	69_37n	-1	known	missense	c.1850	p.C617Y	1.000	pfam_Dynactin	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843	66	0	0	20	13	39.39	-	-	-	T	74595859	C	T	74595859	3	4	901	1	0	0	0	0	1	0	0	0	4337	710	25	4	2054	4	DCTN1	2	74595859	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09	942242	74595859	168603514	2	73246										
TTN	0	genome.wustl.edu	37	chr2	179550299	179550299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	aatgtgcagcttttcttccaCaacatattcctcaggctctt	5	12	3	0			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	2	179550299	179550299	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.28606	p.V9536L	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	124	0	0	34	24	41.38	-	-	-	A	179550299	C	A	179550299	3	1	901	1	0	0	0	0	1	0	0	0	16832	478	17	4	72131	4	TTN	2	179550299	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09	104954440	179550299	63649074	3	73247										
ECEL1	0	genome.wustl.edu	37	chr2	233350770	233350771	+	Frame_Shift_Ins	INS	-	-	A													0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	tgacctctagcatgggtcgcINSgggcccagtcgctcgatctc							TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	2	233350770	233350771	-	A	INS	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	frame_shift_ins	c.594_593	p.R199fs	0.458:0.998	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	13	0	0	2	2	50	-	-	-	A	233350771	-	A	233350770	7	5	901	1	0	1	1	0	0	0	0	0	4926	755	27	0	1801	0	ECEL1	2	233350770	Frame_Shift_Ins	INS	-	TCGA-EW-A1P0-01A-11D-A142-09	53800471	233350770	9848603	4	73248										
COL6A5	0	genome.wustl.edu	37	chr3	130095411	130095411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	aatgggagagacaggaaacaGtttcccccaattttggtggt	12	7	0	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	3	130095411	130095411	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	silent	c.399	p.Q133	0.293	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	64	0	0	28	15	34.88	-	-	-	A	130095411	G	A	130095411	2	1	901	1	0	0	0	0	0	0	0	1	3732	1020	36	4		4	COL6A5	3	130095411	Silent	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09		130095411	67927019	5	73249										
PIK3CA	0	genome.wustl.edu	37	chr3	178948044	178948044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	agattttggacactttttggAtcacaagaagaaaaaatttg	8	4	1	3			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	3	178948044	178948044	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2816	p.D939G	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	9	10	52.63	-	-	-	G	178948044	A	G	178948044	3	3	901	1	0	0	0	0	1	0	0	0	11987	333	12	5	2890	5	PIK3CA	3	178948044	Missense_Mutation	SNP	A	TCGA-EW-A1P0-01A-11D-A142-09	48852633	178948044	19074386	6	73250										
MEPE	0	genome.wustl.edu	37	chr4	88767390	88767390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	aatggattcctttaatggccCcagtcatgagaatataataa	7	7	1	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	4	88767390	88767390	C	T	SNP	MEPE	ENST00000361056	human	ensembl	69_37n	1	known	missense	c.1370	p.P457L	0.000	NULL	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595	51	0	0	16	8	33.33	-	-	-	T	88767390	C	T	88767390	3	4	901	1	0	0	0	0	1	0	0	0	9549	623	22	4	1380	4	MEPE	4	88767390	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09		88767390	102386886	7	73251										
PCDHB11	0	genome.wustl.edu	37	chr5	140580709	140580709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	gcccccaccttcacccaaacCtcctacaccctgttcgtccg	4	22	1	0			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	5	140580709	140580709	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	silent	c.1362	p.T454	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	63	0	0	20	20	50	-	-	-	T	140580709	C	T	140580709	2	4	901	1	0	0	0	0	0	0	0	1	11609	668	24	4		4	PCDHB11	5	140580709	Silent	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09		140580709	40334551	8	73252										
PKHD1L1	0	genome.wustl.edu	37	chr8	110412471	110412471	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	acatttgttgcacgctttagTggatttttggtggctccaga	11	7	0	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	8	110412471	110412471	T	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.1179	p.S393R	1.000	pfam_PA14,smart_PA14	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	207	0	0	36	108	75	-	-	-	A	110412471	T	A	110412471	3	1	901	1	0	0	0	0	1	0	0	0	12046	1693	59	5	1229	5	PKHD1L1	8	110412471	Missense_Mutation	SNP	T	TCGA-EW-A1P0-01A-11D-A142-09		110412471	35951551	9	73253										
FAT3	0	genome.wustl.edu	37	chr11	92507304	92507304	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	cagaggtccatctataatatGagtgtggaagtcaccgatgg	12	7	2	2			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	11	92507304	92507304	G	C	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	1	known	missense	c.4293	p.M1431I	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	72	0	0	32	17	34.69	-	-	-	C	92507304	G	C	92507304	3	2	901	1	0	0	0	0	1	0	0	0	5737	1290	45	2	4315	2	FAT3	11	92507304	Missense_Mutation	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09		92507304	42499212	10	73254										
PLCZ1	0	genome.wustl.edu	37	chr12	18837138	18837138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	ctattaaaccttgaccttcaAcaacaaaacgtatcaatgcc	3	12	2	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	12	18837138	18837138	A	G	SNP	PLCZ1	ENST00000266505	human	ensembl	69_37n	-1	known	missense	c.1667	p.V556A	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	107	0	0	28	24	46.15	-	-	-	G	18837138	A	G	18837138	3	3	901	1	0	0	0	0	1	0	0	0	12118	43	2	5	167	5	PLCZ1	12	18837138	Missense_Mutation	SNP	A	TCGA-EW-A1P0-01A-11D-A142-09		18837138	115014757	11	73255										
PPFIBP1	0	genome.wustl.edu	37	chr12	27832871	27832871	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	tgttgtcttctttagacttaGgagaagtcaatcaactacat	7	7	4	2			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	12	27832871	27832871	G	C	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	1	known	missense	c.1790	p.R597T	0.997	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	52	0	0	12	13	52	-	-	-	C	27832871	G	C	27832871	3	2	901	1	0	0	0	0	1	0	0	0	12386	1000	35	4	1888	4	PPFIBP1	12	27832871	Missense_Mutation	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09	8995733	27832871	106019024	12	73256										
GOLGA3	0	genome.wustl.edu	37	chr12	133351864	133351864	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	ggtcatggacaggtcttcctGggccatctccaactcagact	10	13	4	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	12	133351864	133351864	G	C	SNP	GOLGA3	ENST00000204726	human	ensembl	69_37n	-1	known	missense	c.4006	p.Q1336E	0.984	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	89	0	0	25	10	28.57	-	-	-	C	133351864	G	C	133351864	3	2	901	1	0	0	0	0	1	0	0	0	6606	1357	47	4	502	4	GOLGA3	12	133351864	Missense_Mutation	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09	105518993	133351864	500031	13	73257										
TNFRSF19	0	genome.wustl.edu	37	chr13	24242970	24242970	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	tctctttttgtgactcttatCctgaactcactggagaagac	7	10	3	4			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	13	24242970	24242970	C	A	SNP	TNFRSF19	ENST00000382258	human	ensembl	69_37n	1	known	missense	c.979	p.P327T	0.057	NULL	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_19	-	no_errors	TNFRSF19	HGNC	ENSG00000127863	61	0	0	27	7	20.59	-	-	-	A	24242970	C	A	24242970	3	1	901	1	0	0	0	0	1	0	0	0	16387	855	30	2	1009	2	TNFRSF19	13	24242970	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09		24242970	90926908	14	73258										
MSL1	0	genome.wustl.edu	37	chr17	38282588	38282588	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	aaactggagtgccagccggaGctttccgagacatcccagac	11	13	0	2			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	17	38282588	38282588	G	A	SNP	MSL1	ENST00000398532	human	ensembl	69_37n	1	known	silent	c.921	p.E307	1.000	NULL	NULL	-	no_errors	MSL1	HGNC	ENSG00000188895	57	0	0	23	19	45.24	-	-	-	A	38282588	G	A	38282588	2	1	901	1	0	0	0	0	0	0	0	1	9949	962	34	4		4	MSL1	17	38282588	Silent	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09		38282588	42912622	15	73259										
CBX1	0	genome.wustl.edu	37	chr17	46148872	46148872	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	agcctttcctcatagaaggaTatgacaacctgtgggcactt	9	10	1	2			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	17	46148872	46148872	T	A	SNP	CBX1	ENST00000225603	human	ensembl	69_37n	-1	known	silent	c.483	p.I161	1.000	pfam_Chromo_shadow_dom,superfamily_Chromodomain-like,smart_Chromo_shadow_dom,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX1	HGNC	ENSG00000108468	74	0	0	31	8	20.51	-	-	-	A	46148872	T	A	46148872	2	1	901	1	0	0	0	0	0	0	0	1	2742	1396	49	5		5	CBX1	17	46148872	Silent	SNP	T	TCGA-EW-A1P0-01A-11D-A142-09	7866284	46148872	35046338	16	73260										
DHX40	0	genome.wustl.edu	37	chr17	57650594	57650594	+	Frame_Shift_Del	DEL	A	A	-													0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	cccatgaaagaactctaactAcagtgagtattttaatttat							TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	17	57650594	57650594	A	-	DEL	DHX40	ENST00000251241	human	ensembl	69_37n	1	known	frame_shift_del	c.544	p.T182fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406	42	0	0	23	12	34.29	-	-	-	-	57650594	A	-	57650594	7	5	901	1	0	1	0	1	0	0	0	0	4548	391	14	0	558	0	DHX40	17	57650594	Frame_Shift_Del	DEL	A	TCGA-EW-A1P0-01A-11D-A142-09	11501722	57650594	23544616	17	73261										
DHPS	0	genome.wustl.edu	37	chr19	12788175	12788175	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	atcatgtcgcccagcgagccGtctgtaagtgcgggactaaa	12	11	2	0			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	19	12788175	12788175	G	A	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	silent	c.714	p.D238	0.463	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	55	0	0	17	16	48.48	-	-	-	A	12788175	G	A	12788175	2	1	901	1	0	0	0	0	0	0	0	1	4521	1136	40	1		1	DHPS	19	12788175	Silent	SNP	G	TCGA-EW-A1P0-01A-11D-A142-09		12788175	46340808	18	73262										
CD3EAP	0	genome.wustl.edu	37	chr19	45912507	45912507	+	Frame_Shift_Del	DEL	G	G	-													0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	accaagaagaagaagaagaaGaaagagagaggtcacacagt							TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	19	45912507	45912507	G	-	DEL	CD3EAP	ENST00000589804	human	ensembl	69_37n	1	known	frame_shift_del	c.1287	p.E431fs	0.883	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877	60	0	0	17	2	10.53	-	-	-	-	45912507	G	-	45912507	7	5	901	1	0	1	0	1	0	0	0	0	3041	933	33	0	1291	0	CD3EAP	19	45912507	Frame_Shift_Del	DEL	G	TCGA-EW-A1P0-01A-11D-A142-09	33124332	45912507	13216476	19	73263										
CELSR1	0	genome.wustl.edu	37	chr22	46932208	46932208	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	cccgggagcgctcgtcgaacAgcccctccatgtaatagctc	10	16	0	0			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	22	46932208	46932208	A	G	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	missense	c.860	p.L287P	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	32	0	0	11	4	26.67	-	-	-	G	46932208	A	G	46932208	3	3	901	1	0	0	0	0	1	0	0	0	3250	188	7	5	8324	5	CELSR1	22	46932208	Missense_Mutation	SNP	A	TCGA-EW-A1P0-01A-11D-A142-09		46932208	4372358	20	73264										
HTR2C	0	genome.wustl.edu	37	chrX	114141530	114141530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	caacaatgaaagaaaagcttCgaaagtccttgggattgttt	9	6	0	2			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	X	114141530	114141530	C	T	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	missense	c.929	p.S310L	0.994	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	150	1	0.66	13	30	69.77	-	-	-	T	114141530	C	T	114141530	3	4	901	1	0	0	0	0	1	0	0	0	7497	893	31	1	943	1	HTR2C	23	114141530	Missense_Mutation	SNP	C	TCGA-EW-A1P0-01A-11D-A142-09		114141530	41129030	21	73265										
RAP2C	0	genome.wustl.edu	37	chrX	131348321	131348321	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0454545454545455	1	0.994628167771038	0.617241379310345	2.05747126436782	0	1	1	0	actttttgccgatgtctccaTgaaaggacagccccattctt	7	12	2	1			TCGA-EW-A1P0-01A-11D-A142-09	TCGA-EW-A1P0-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6475f4dd-782c-411a-b7ce-9c9ebd0753b8	b71deea6-58d2-42b0-89f6-8a195ffe6213	X	131348321	131348321	T	C	SNP	RAP2C	ENST00000342983	human	ensembl	69_37n	-1	known	missense	c.427	p.M143V	1.000	pfam_Small_GTPase,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2C	HGNC	ENSG00000123728	85	0	0	11	16	59.26	-	-	-	C	131348321	T	C	131348321	3	2	901	1	0	0	0	0	1	0	0	0	13125	1464	51	5	128	5	RAP2C	23	131348321	Missense_Mutation	SNP	T	TCGA-EW-A1P0-01A-11D-A142-09	17206791	131348321	23922239	22	73266										
POTEE	0	genome.wustl.edu	37	chr2	132022031	132022031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	accaacacagtgctgtctggCggcaccaccatgtaccctgg	10	15	1	0			TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	9	0	0	3	4	57.14	-	-	-	T	132022031	C	T	132022031	2	4	902	1	0	0	0	0	0	0	0	1	12338	755	27	1		1	POTEE	2	132022031	Silent	SNP	C	TCGA-EW-A1P1-01A-31D-A14G-09		132022031	111177342	1	73267										
NPHP4	0	genome.wustl.edu	37	chr1	5967185	5967185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	cggcacttactgcctgggccGgggaggcctgagagccatgg	17	12	0	1			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	5967185	5967185	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1601	p.P534L	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	23	0	0	14	7	33.33	-	-	-	A	5967185	G	A	5967185	3	1	903	1	0	0	0	0	1	0	0	0	10653	1116	39	1	2751	1	NPHP4	1	5967185	Missense_Mutation	SNP	G	TCGA-EW-A1P3-01A-11D-A142-09		5967185	243283436	1	73268										
CYTIP	0	genome.wustl.edu	37	chr2	158272428	158272428	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	ggggataaagcactcatcatCtgtactcgtctgccgactga	10	11	4	1			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	158272428	158272428	C	T	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	missense	c.841	p.D281N	0.997	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	46	0	0	25	8	24.24	-	-	-	T	158272428	C	T	158272428	3	4	903	1	0	0	0	0	1	0	0	0	4238	913	32	2	242	2	CYTIP	2	158272428	Missense_Mutation	SNP	C	TCGA-EW-A1P3-01A-11D-A142-09		158272428	84926945	2	73269										
CASP8	0	genome.wustl.edu	37	chr2	202131411	202131411	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	tcctgaaggagctgctcttcCgaattaatagactggatttg	10	8	1	2			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	202131411	202131411	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	nonsense	c.379	p.R127*	0.742	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	36	0	0	33	5	13.16	-	-	-	T	202131411	C	T	202131411	4	4	903	1	0	0	0	0	0	1	0	0	2702	644	23	1	385	1	CASP8	2	202131411	Nonsense_Mutation	SNP	C	TCGA-EW-A1P3-01A-11D-A142-09	43858983	202131411	41067962	3	73270										
FBXL2	0	genome.wustl.edu	37	chr3	33406169	33406169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	cggtggattcctgaggaagcTcagcttgcgaggctgcattg	15	9	1	1			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	3	33406169	33406169	T	G	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	1	known	missense	c.248	p.L83R	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL2	HGNC	ENSG00000153558	78	0	0	33	9	21.43	-	-	-	G	33406169	T	G	33406169	3	3	903	1	0	0	0	0	1	0	0	0	5762	1551	54	5	266	5	FBXL2	3	33406169	Missense_Mutation	SNP	T	TCGA-EW-A1P3-01A-11D-A142-09		33406169	164616261	4	73271										
TBC1D19	0	genome.wustl.edu	37	chr4	26622298	26622298	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	aaagaacctttggtatacatGaggaaagcacaggttggcta	11	6	0	2			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	4	26622298	26622298	G	A	SNP	TBC1D19	ENST00000264866	human	ensembl	69_37n	1	known	missense	c.282	p.M94I	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D19	HGNC	ENSG00000109680	71	0	0	60	17	22.08	-	-	-	A	26622298	G	A	26622298	3	1	903	1	0	0	0	0	1	0	0	0	15699	1290	45	2	296	2	TBC1D19	4	26622298	Missense_Mutation	SNP	G	TCGA-EW-A1P3-01A-11D-A142-09		26622298	164531978	5	73272										
PKD2L2	0	genome.wustl.edu	37	chr5	137226171	137226171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	tttgtcttatatctcacaggGgcttcgaaacataagttgca	8	8	2	0			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	5	137226171	137226171	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	1	known	silent	c.33	p.G11	0.132	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	52	0	0	50	19	27.54	-	-	-	A	137226171	G	A	137226171	2	1	903	1	0	0	0	0	0	0	0	1	12042	1246	43	4		4	PKD2L2	5	137226171	Silent	SNP	G	TCGA-EW-A1P3-01A-11D-A142-09		137226171	43689089	6	73273										
DST	0	genome.wustl.edu	37	chr6	56458463	56458464	+	Frame_Shift_Ins	INS	-	-	A													0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	aatcaaaataacattaccttINSagagtagagagacctgaacc							TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	6	56458463	56458464	-	A	INS	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12631_12630	p.K4210fs	0.998:0.649	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	38	0	0	21	15	41.67	-	-	-	A	56458464	-	A	56458463	7	5	903	1	0	1	1	0	0	0	0	0	4818	1763	61	0	10884	0	DST	6	56458463	Frame_Shift_Ins	INS	-	TCGA-EW-A1P3-01A-11D-A142-09		56458463	114656604	7	73274										
GATA3	0	genome.wustl.edu	37	chr10	8115725	8115728	+	Frame_Shift_Del	DEL	GAAG	GAAG	-													0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	aacagacccctgactatgaaGaaggaaggcatccagaccag							TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	GAAG	GAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	10	8115725	8115728	GAAG	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1074_1077	p.E360fs	1.000:1.000:1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	35	0	0	13	6	31.58	-	-	-	-	8115728	GAAG	-	8115725	7	5	903	1	0	1	0	1	0	0	0	0	6305	933	33	0	1092	0	GATA3	10	8115725	Frame_Shift_Del	DEL	GAAG	TCGA-EW-A1P3-01A-11D-A142-09		8115725	127419022	8	73275										
SRPR	0	genome.wustl.edu	37	chr11	126136761	126136761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	tccgttctcaggacccactgGaagacctgacttttctgcag	9	13	2	2			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	11	126136761	126136761	G	A	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.583	p.P195S	0.909	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	60	0	0	37	12	24.49	-	-	-	A	126136761	G	A	126136761	3	1	903	1	0	0	0	0	1	0	0	0	15253	1174	41	2	1373	2	SRPR	11	126136761	Missense_Mutation	SNP	G	TCGA-EW-A1P3-01A-11D-A142-09		126136761	8869755	9	73276										
CYFIP1	0	genome.wustl.edu	37	chr15	22928474	22928474	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	accgtggaggttctggagccTgaggtcacaaaactgatgaa	13	8	2	3			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	15	22928474	22928474	T	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	silent	c.351	p.P117	0.920	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	43	0	0	36	8	18.18	-	-	-	A	22928474	T	A	22928474	2	1	903	1	0	0	0	0	0	0	0	1	4168	1567	55	5		5	CYFIP1	15	22928474	Silent	SNP	T	TCGA-EW-A1P3-01A-11D-A142-09		22928474	79602918	10	73277										
CDYL2	0	genome.wustl.edu	37	chr16	80646646	80646646	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	cacacgatgtcacagaggggCaggatggaggcacccaggcc	15	12	1	1			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	16	80646646	80646646	C	A	SNP	CDYL2	ENST00000299564	human	ensembl	69_37n	-1	known	silent	c.1095	p.L365	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	45	0	0	13	8	38.1	-	-	-	A	80646646	C	A	80646646	2	1	903	1	0	0	0	0	0	0	0	1	3215	697	25	4		4	CDYL2	16	80646646	Silent	SNP	C	TCGA-EW-A1P3-01A-11D-A142-09		80646646	9708107	11	73278										
CACNA1A	0	genome.wustl.edu	37	chr19	13427968	13427968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.477253117815372	2.55952380952381	NA	2.55952380952381	0.333333333333333	0.930327025915261	0	gggctggttgtagtgaacaaTagcaacacacagcgtgttga	13	7	0	2			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	13427968	13427968	T	C	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.1513	p.I505V	0.996	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	34	0	0	29	8	21.62	-	-	-	C	13427968	T	C	13427968	3	2	903	1	0	0	0	0	1	0	0	0	2563	1406	49	5	6266	5	CACNA1A	19	13427968	Missense_Mutation	SNP	T	TCGA-EW-A1P3-01A-11D-A142-09		13427968	45701015	12	73279										
CLCA1	0	genome.wustl.edu	37	chr1	86959277	86959277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	acctccaaatcccaggcattGctaaggtatggagtcagctt	9	11	1	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	86959277	86959277	G	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	1	known	missense	c.1675	p.A559S	1.000	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	52	0	0	36	12	25	-	-	-	T	86959277	G	T	86959277	3	4	904	1	0	0	0	0	1	0	0	0	3487	1319	46	4	1713	4	CLCA1	1	86959277	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09		86959277	162291344	1	73280										
TNN	0	genome.wustl.edu	37	chr1	175097249	175097249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	cctaccctgtctcccttgttGcctttaagggtggtcgccgg	11	14	1	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	175097249	175097249	G	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	1	known	missense	c.3127	p.A1043T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	38	0	0	10	13	56.52	-	-	-	A	175097249	G	A	175097249	3	1	904	1	0	0	0	0	1	0	0	0	16418	1319	46	4	3177	4	TNN	1	175097249	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	88137972	175097249	74153372	2	73281										
RFWD2	0	genome.wustl.edu	37	chr1	176012377	176012377	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ggatccatcaaattaaagtcAacactccaacacctcttctc	3	14	4	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	176012377	176012377	A	T	SNP	RFWD2	ENST00000459744	human	ensembl	69_37n	-1	novel	nonsense	c.716	p.L239*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon	RFWD2	HGNC	ENSG00000143207	92	0	0	26	8	23.53	-	-	-	T	176012377	A	T	176012377	4	4	904	1	0	0	0	0	0	1	0	0	13343	117	5	5	666	5	RFWD2	1	176012377	Nonsense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	915128	176012377	73238244	3	73282										
KIAA1804	0	genome.wustl.edu	37	chr1	233518092	233518092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ccactggagcctctgcactgCcactctgcccctcacctgct	7	20	3	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	233518092	233518092	C	T	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	missense	c.2746	p.P916S	0.851	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	50	0	0	26	4	13.33	-	-	-	T	233518092	C	T	233518092	3	4	904	1	0	0	0	0	1	0	0	0	8311	739	26	4	2784	4	KIAA1804	1	233518092	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	57505715	233518092	15732529	4	73283										
RYR2	0	genome.wustl.edu	37	chr1	237753140	237753140	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tggctcaagtgggtaggatgAactttggaaaggatgtcagc	15	5	2	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	237753140	237753140	A	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.3640	p.N1214D	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	70	0	0	40	18	31.03	-	-	-	G	237753140	A	G	237753140	3	3	904	1	0	0	0	0	1	0	0	0	13855	246	9	5	3764	5	RYR2	1	237753140	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	4235048	237753140	11497481	5	73284										
TCF7L1	0	genome.wustl.edu	37	chr2	85529633	85529633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	aaagttcctgtcgttcagcaCccgcatcacatgcatccgct	7	15	2	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	85529633	85529633	C	A	SNP	TCF7L1	ENST00000282111	human	ensembl	69_37n	1	known	missense	c.552	p.H184Q	0.997	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L1	HGNC	ENSG00000152284	48	0	0	27	8	22.86	-	-	-	A	85529633	C	A	85529633	3	1	904	1	0	0	0	0	1	0	0	0	15792	506	18	4	570	4	TCF7L1	2	85529633	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		85529633	157669740	6	73285										
DGKD	0	genome.wustl.edu	37	chr2	234378033	234378033	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gcaggacctgggcgtgaccaAggtgggccacatgaagagga	17	9	0	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234378033	234378033	A	T	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.3572	p.K1191M	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	39	0	0	19	11	36.67	-	-	-	T	234378033	A	T	234378033	3	4	904	1	0	0	0	0	1	0	0	0	4503	72	3	5	3714	5	DGKD	2	234378033	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	148848400	234378033	8821340	7	73286										
UGT1A8	0	genome.wustl.edu	37	chr2	234526969	234526969	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	atgccatgactttcaaggagAgagtacggaaccacatcatg	10	9	2	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234526969	234526969	A	G	SNP	UGT1A8	ENST00000373450	human	ensembl	69_37n	1	known	missense	c.616	p.R206G	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366	127	0	0	50	17	25.37	-	-	-	G	234526969	A	G	234526969	3	3	904	1	0	0	0	0	1	0	0	0	17048	296	11	5	618	5	UGT1A8	2	234526969	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	148936	234526969	8672404	8	73287										
TRPM8	0	genome.wustl.edu	37	chr2	234871945	234871945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ggacgtgtctcctattactcGgcaccccctgcaagctctct	8	16	2	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234871945	234871945	G	A	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	1	known	missense	c.1673	p.R558Q	0.999	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	100	0	0	48	13	21.31	-	-	-	A	234871945	G	A	234871945	3	1	904	1	0	0	0	0	1	0	0	0	16688	1116	39	1	1719	1	TRPM8	2	234871945	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	344976	234871945	8327428	9	73288										
CCR1	0	genome.wustl.edu	37	chr3	46245442	46245442	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtcagcaggatgatgaaaaaGatctcgctgtacaagcctgt	11	8	2	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	46245442	46245442	G	T	SNP	CCR1	ENST00000296140	human	ensembl	69_37n	-1	known	silent	c.363	p.I121	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_P2_purnocptor,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	61	0	0	20	18	47.37	-	-	-	T	46245442	G	T	46245442	2	4	904	1	0	0	0	0	0	0	0	1	2968	932	33	2		2	CCR1	3	46245442	Silent	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09		46245442	151776988	10	73289										
PIK3R4	0	genome.wustl.edu	37	chr3	130447357	130447357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gatgccaatcattcttatcaTttaggaaagtaatcatgtgg	8	6	4	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	130447357	130447357	T	C	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.1757	p.N586S	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	77	0	0	20	22	52.38	-	-	-	C	130447357	T	C	130447357	3	2	904	1	0	0	0	0	1	0	0	0	11995	1493	52	5	2379	5	PIK3R4	3	130447357	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09	84201915	130447357	67575073	11	73290										
MSL2	0	genome.wustl.edu	37	chr3	135870742	135870742	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttcggagttgctgctgtacaTgataacccatgaagtgcagg	12	8	0	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	135870742	135870742	T	A	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	silent	c.981	p.S327	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	63	0	0	17	24	58.54	-	-	-	A	135870742	T	A	135870742	2	1	904	1	0	0	0	0	0	0	0	1	9950	1451	51	5		5	MSL2	3	135870742	Silent	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09	5423385	135870742	62151688	12	73291										
ZFYVE28	0	genome.wustl.edu	37	chr4	2341251	2341251	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	atcttctctgtgtaggtgttCaggtcccgcagcgcctggtc	12	12	3	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	2341251	2341251	C	G	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.450	p.L150	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	37	0	0	9	4	30.77	-	-	-	G	2341251	C	G	2341251	2	3	904	1	0	0	0	0	0	0	0	1	17766	813	29	2		2	ZFYVE28	4	2341251	Silent	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		2341251	188813025	13	73292										
TXK	0	genome.wustl.edu	37	chr4	48115241	48115241	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tacttgcttcttatttgacaAttggctgagccacggcctgc	9	11	1	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	48115241	48115241	A	G	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	silent	c.157	p.L53	0.000	superfamily_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	116	0	0	38	11	22.45	-	-	-	G	48115241	A	G	48115241	2	3	904	1	0	0	0	0	0	0	0	1	16883	98	4	5		5	TXK	4	48115241	Silent	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	45773990	48115241	143039035	14	73293										
FYB	0	genome.wustl.edu	37	chr5	39127855	39127855	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	attcttacccatcatcagcaTcttcctcttcaatcccatca	1	16	7	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	39127855	39127855	T	A	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	missense	c.1925	p.D642V	0.935	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	136	0	0	69	28	28.87	-	-	-	A	39127855	T	A	39127855	3	1	904	1	0	0	0	0	1	0	0	0	6173	1435	50	5	630	5	FYB	5	39127855	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09		39127855	141787405	15	73294										
LIX1	0	genome.wustl.edu	37	chr5	96430625	96430625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	caactgcctcagggccattcGtagctcttgagagacaattc	9	12	2	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	96430625	96430625	G	C	SNP	LIX1	ENST00000274382	human	ensembl	69_37n	-1	known	missense	c.676	p.R226G	0.989	NULL	NULL	-	no_errors	LIX1	HGNC	ENSG00000145721	72	0	0	16	17	51.52	-	-	-	C	96430625	G	C	96430625	3	2	904	1	0	0	0	0	1	0	0	0	8887	1153	40	3	176	3	LIX1	5	96430625	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	57302770	96430625	84484635	16	73295										
NOX3	0	genome.wustl.edu	37	chr6	155761166	155761166	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ccagaacaactcataggaggCctgtctgatgaactcagttg	10	10	3	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	6	155761166	155761166	C	A	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	missense	c.592	p.A198S	0.937	pfam_Fe3_Rdtase_TM_dom,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	66	0	0	35	14	28.57	-	-	-	A	155761166	C	A	155761166	3	1	904	1	0	0	0	0	1	0	0	0	10629	739	26	4	1146	4	NOX3	6	155761166	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		155761166	15353901	17	73296										
TNS3	0	genome.wustl.edu	37	chr7	47481602	47481602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gacccacacagacactcaccGcagaggtttatcacggcaga	9	14	2	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	7	47481602	47481602	G	A	SNP	TNS3	ENST00000457718	human	ensembl	69_37n	-1	putative	missense	c.286	p.R96W	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Tyr_Pase_cat,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_stop_codon:bad_bp_length_for_coding_region	TNS3	HGNC	ENSG00000136205	8	0	0	1	5	83.33	-	-	-	A	47481602	G	A	47481602	3	1	904	1	0	0	0	0	1	0	0	0	16439	1101	38	1		1	TNS3	7	47481602	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09		47481602	111657061	18	73297										
CCDC132	0	genome.wustl.edu	37	chr7	92926136	92926136	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tgatttcatctttgttttggAtataatcagcaggtagtatt	8	4	3	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	7	92926136	92926136	A	G	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	1	known	missense	c.1250	p.D417G	1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	103	0	0	33	12	26.67	-	-	-	G	92926136	A	G	92926136	3	3	904	1	0	0	0	0	1	0	0	0	2792	333	12	5	1350	5	CCDC132	7	92926136	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	45444534	92926136	66212527	19	73298										
PLEC	0	genome.wustl.edu	37	chr8	144991532	144991532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gcggtaggcctcgtacactgAcatctccttgcccgtctcgg	11	15	2	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	8	144991532	144991532	A	G	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.12868	p.S4290P	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	34	0	0	9	6	40	-	-	-	G	144991532	A	G	144991532	3	3	904	1	0	0	0	0	1	0	0	0	12126	275	10	5	1190	5	PLEC	8	144991532	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09		144991532	1372490	20	73299										
FAM75A1	0	genome.wustl.edu	37	chr9	39361134	39361134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttagaaaaacatgaagaaagGcttgaaggattgaggactcc	11	5	0	5			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	39361134	39361134	G	T	SNP	FAM75A1	ENST00000377647	human	ensembl	69_37n	1	known	missense	c.3372	p.R1124S	0.000	NULL	NULL	-	no_errors	FAM75A1	HGNC	ENSG00000204849	27	0	0	6	6	50	-	-	-	T	39361134	G	T	39361134	3	4	904	1	0	0	0	0	1	0	0	0	5664	1194	42	4	3386	4	FAM75A1	9	39361134	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09		39361134	101852297	21	73300										
SEC16A	0	genome.wustl.edu	37	chr9	139341757	139341757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtccgcaggagcgagagccgGctcgctccgctgggtcccgc	16	16	0	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	139341757	139341757	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.6619	p.P2207S	0.003	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	28	0	0	6	10	62.5	-	-	-	A	139341757	G	A	139341757	3	1	904	1	0	0	0	0	1	0	0	0	14074	1203	42	4	478	4	SEC16A	9	139341757	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	99980623	139341757	1871674	22	73301										
CACNA1B	0	genome.wustl.edu	37	chr9	140943768	140943768	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ctggtggcgtttgctttctcGtaagtaacgttcgctctgct	11	10	2	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	140943768	140943768	G	C	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	splice_site	c.3713+1	e24+1	1.000	-	-	-	no_errors	CACNA1B	HGNC	ENSG00000148408	135	0	0	23	28	54.9	-	-	-	C	140943768	G	C	140943768	5	2	904	1	0	0	0	0	0	0	1	0	2564	1159	40	3	3805	3	CACNA1B	9	140943768	Splice_Site	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	1602011	140943768	269663	23	73302										
NMT2	0	genome.wustl.edu	37	chr10	15161504	15161504	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	attggtctcaaacctgaagtCtttgtaaccttgttggaggg	11	7	2	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	15161504	15161504	C	G	SNP	NMT2	ENST00000378143	human	ensembl	69_37n	-1	known	missense	c.1101	p.K367N	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465	74	0	0	47	20	29.85	-	-	-	G	15161504	C	G	15161504	3	3	904	1	0	0	0	0	1	0	0	0	10576	912	32	2	504	2	NMT2	10	15161504	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		15161504	120373243	24	73303										
MPP7	0	genome.wustl.edu	37	chr10	28378743	28378743	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttgttttcttatcttttctaCtaagacgaaaactttttcta	3	7	4	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	28378743	28378743	C	G	SNP	MPP7	ENST00000337532	human	ensembl	69_37n	-1	known	missense	c.980	p.S327T	1.000	superfamily_SH3_domain	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP7	HGNC	ENSG00000150054	121	0	0	39	18	31.58	-	-	-	G	28378743	C	G	28378743	3	3	904	1	0	0	0	0	1	0	0	0	9811	565	20	4	774	4	MPP7	10	28378743	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	13217239	28378743	107156004	25	73304										
ANKRD30A	0	genome.wustl.edu	37	chr10	37419187	37419187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttctgatagattctggtgccGatataaatctcgtagatgtg	10	6	3	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	37419187	37419187	G	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	missense	c.223	p.D75N	0.300	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	89	0	0	28	15	34.88	-	-	-	A	37419187	G	A	37419187	3	1	904	1	0	0	0	0	1	0	0	0	658	1058	37	1	233	1	ANKRD30A	10	37419187	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	9040444	37419187	98115560	26	73305										
CDH23	0	genome.wustl.edu	37	chr10	73494028	73494028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	agtccagggcctggtggaccGtgagaagggcgacttctata	15	9	1	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	73494028	73494028	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.4145	p.R1382H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	49	0	0	14	16	53.33	-	-	-	A	73494028	G	A	73494028	3	1	904	1	0	0	0	0	1	0	0	0	3137	1145	40	1	4611	1	CDH23	10	73494028	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	36074841	73494028	62040719	27	73306										
POLR3A	0	genome.wustl.edu	37	chr10	79778932	79778932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	aagattaccttttcatctgcGtatgtctctgctgaatgaag	8	8	3	3			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	79778932	79778932	G	T	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	missense	c.1277	p.T426K	0.004	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	140	0	0	50	30	37.04	-	-	-	T	79778932	G	T	79778932	3	4	904	1	0	0	0	0	1	0	0	0	12302	1145	40	3	2987	3	POLR3A	10	79778932	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	6284904	79778932	55755815	28	73307										
GBF1	0	genome.wustl.edu	37	chr10	104130498	104130498	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtgtgtggcagactgttcgaGaccatctataccacctctgt	10	11	2	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	104130498	104130498	G	C	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	1	known	missense	c.3538	p.D1180H	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	93	0	0	42	5	10.64	-	-	-	C	104130498	G	C	104130498	3	2	904	1	0	0	0	0	1	0	0	0	6321	942	33	2	3648	2	GBF1	10	104130498	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	24351566	104130498	31404249	29	73308										
TRPM5	0	genome.wustl.edu	37	chr11	2432879	2432879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gctcaccatgcgctctaccaCgatgatcttggggcccagct	10	15	3	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	2432879	2432879	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2599	p.V867M	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	40	0	0	27	4	12.9	-	-	-	T	2432879	C	T	2432879	3	4	904	1	0	0	0	0	1	0	0	0	16685	536	19	1	936	1	TRPM5	11	2432879	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		2432879	132573637	30	73309										
DYNC2H1	0	genome.wustl.edu	37	chr11	103114423	103114423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttccttttttttatactagaGtcgagtgtgcccatttctta	6	8	1	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	103114423	103114423	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.9842	p.S3281N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	113	0	0	50	13	20.63	-	-	-	A	103114423	G	A	103114423	3	1	904	1	0	0	0	0	1	0	0	0	4881	1043	36	4	10100	4	DYNC2H1	11	103114423	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	100681544	103114423	31892093	31	73310										
DENND5B	0	genome.wustl.edu	37	chr12	31576559	31576559	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tctgcaaggtgctcttgtttCtcttctctgtcctgaaattg	8	10	4	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	31576559	31576559	C	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.2547	p.E849D	1.000	pfam_Run,pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	145	0	0	59	21	26.25	-	-	-	G	31576559	C	G	31576559	3	3	904	1	0	0	0	0	1	0	0	0	4473	912	32	2	1426	2	DENND5B	12	31576559	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		31576559	102275336	32	73311										
STAT6	0	genome.wustl.edu	37	chr12	57493104	57493104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtggctccggaaagcctcatCcttgggcttcttgggataga	13	10	2	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	57493104	57493104	C	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.1864	p.D622Y	1.000	smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	58	0	0	15	4	21.05	-	-	-	A	57493104	C	A	57493104	3	1	904	1	0	0	0	0	1	0	0	0	15361	855	30	2	707	2	STAT6	12	57493104	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	25916545	57493104	76358791	33	73312										
TGM1	0	genome.wustl.edu	37	chr14	24724436	24724436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtgggctgctgctgtctctaCtgccttccgctctgcgtctg	12	14	3	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	24724436	24724436	C	G	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.1669	p.V557L	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	42	0	0	17	12	41.38	-	-	-	G	24724436	C	G	24724436	3	3	904	1	0	0	0	0	1	0	0	0	15924	565	20	4	800	4	TGM1	14	24724436	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		24724436	82625104	34	73313										
RALGAPA1	0	genome.wustl.edu	37	chr14	36207803	36207803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	agagcaccttggtaggagccGttttttgcccaactggaatt	11	9	0	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	36207803	36207803	G	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	silent	c.1503	p.N501	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	116	0	0	34	14	29.17	-	-	-	A	36207803	G	A	36207803	2	1	904	1	0	0	0	0	0	0	0	1	13096	1136	40	1		1	RALGAPA1	14	36207803	Silent	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	11483367	36207803	71141737	35	73314										
DMXL2	0	genome.wustl.edu	37	chr15	51773279	51773279	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gaggccttctgatctgattgTttatctttttccctggcatc	8	10	3	2			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	51773279	51773279	T	C	SNP	DMXL2	ENST00000560891	human	ensembl	69_37n	-1	novel	missense	c.398	p.N133S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMXL2	HGNC	ENSG00000104093	69	0	0	25	37	59.68	-	-	-	C	51773279	T	C	51773279	3	2	904	1	0	0	0	0	1	0	0	0	4631	1722	60	5	3169	5	DMXL2	15	51773279	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09		51773279	50758113	36	73315										
VPS13C	0	genome.wustl.edu	37	chr15	62211583	62211583	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	actggcattgggattccgtaCattatacaatcgccgtccag	9	11	0	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	62211583	62211583	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.7543	p.V2515L	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	76	0	0	26	23	46.94	-	-	-	G	62211583	C	G	62211583	3	3	904	1	0	0	0	0	1	0	0	0	17288	478	17	4	3858	4	VPS13C	15	62211583	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	10438304	62211583	40319809	37	73316										
UBN1	0	genome.wustl.edu	37	chr16	4924574	4924574	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	aaaaggaactttgcgaagccTagtccttctgctccaccacc	7	14	1	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	4924574	4924574	T	G	SNP	UBN1	ENST00000586716	human	ensembl	69_37n	1	novel	missense	c.542	p.L181R	0.857	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN1	HGNC	ENSG00000118900	39	0	0	27	14	34.15	-	-	-	G	4924574	T	G	4924574	3	3	904	1	0	0	0	0	1	0	0	0	16989	1509	53	5	2217	5	UBN1	16	4924574	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09		4924574	85430179	38	73317										
PDILT	0	genome.wustl.edu	37	chr16	20373852	20373852	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tggttttgatattttctgccCaattcctccaacagtgggaa	8	9	1	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	20373852	20373852	C	G	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1290	p.L430F	0.438	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	141	0	0	54	11	16.92	-	-	-	G	20373852	C	G	20373852	3	3	904	1	0	0	0	0	1	0	0	0	11747	593	21	4	476	4	PDILT	16	20373852	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	15449278	20373852	69980901	39	73318										
RPGRIP1L	0	genome.wustl.edu	37	chr16	53725984	53725984	+	Frame_Shift_Del	DEL	T	T	-													0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	aagctttgttttacctttccTggggcattcctgtaaaccag							TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	53725984	53725984	T	-	DEL	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	frame_shift_del	c.523	p.R175fs	0.985	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	146	0	0	90	25	21.01	-	-	-	-	53725984	T	-	53725984	7	5	904	1	0	1	0	1	0	0	0	0	13636	1579	55	0	3520	0	RPGRIP1L	16	53725984	Frame_Shift_Del	DEL	T	TCGA-EW-A1P4-01A-21D-A142-09	33352132	53725984	36628769	40	73319										
CDH15	0	genome.wustl.edu	37	chr16	89256775	89256775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ggtccgcgtgcatgtgcaggAcaccaacgagccccccgtgt	13	15	0	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	89256775	89256775	A	C	SNP	CDH15	ENST00000289746	human	ensembl	69_37n	1	known	missense	c.1103	p.D368A	0.994	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	21	0	0	8	9	52.94	-	-	-	C	89256775	A	C	89256775	3	2	904	1	0	0	0	0	1	0	0	0	3129	275	10	5	1133	5	CDH15	16	89256775	Missense_Mutation	SNP	A	TCGA-EW-A1P4-01A-21D-A142-09	35530791	89256775	1097978	41	73320										
TP53	0	genome.wustl.edu	37	chr17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	cgctatctgagcagcgctcaTggtgggggcagcgcctcaca	14	13	3	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	7578394	7578394	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.536	p.H179R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	46	0	0	11	17	60.71	-	-	-	C	7578394	T	C	7578394	3	2	904	1	0	0	0	0	1	0	0	0	16477	1464	51	5	762	5	TP53	17	7578394	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09		7578394	73616816	42	73321										
KRTAP4-9	0	genome.wustl.edu	37	chr17	39262243	39262243	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gtcatctccagctgcccccgCcccttgtgctgtgcctcctc	8	20	2	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	39262243	39262243	C	A	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	1	known	silent	c.603	p.R201	0.394	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	130	0	0	38	19	33.33	-	-	-	A	39262243	C	A	39262243	2	1	904	1	0	0	0	0	0	0	0	1	8611	726	26	4		4	KRTAP4-9	17	39262243	Silent	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	31683849	39262243	41932967	43	73322										
AOC3	0	genome.wustl.edu	37	chr17	41004614	41004614	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gactggcacttccttttggaGtcccaggcccccaagacaat	9	14	0	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	41004614	41004614	G	A	SNP	AOC3	ENST00000308423	human	ensembl	69_37n	1	known	silent	c.1254	p.E418	0.773	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471	47	0	0	23	12	34.29	-	-	-	A	41004614	G	A	41004614	2	1	904	1	0	0	0	0	0	0	0	1	729	1020	36	4		4	AOC3	17	41004614	Silent	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09	1742371	41004614	40190596	44	73323										
ABCA10	0	genome.wustl.edu	37	chr17	67190077	67190077	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	aaatccaatattctttctaaTttcttccatgtcagttattt	2	8	4	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	67190077	67190077	T	C	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1399	p.I467V	0.048	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	86	0	0	51	19	27.14	-	-	-	C	67190077	T	C	67190077	3	2	904	1	0	0	0	0	1	0	0	0	29	1493	52	5	3340	5	ABCA10	17	67190077	Missense_Mutation	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09	26185463	67190077	14005133	45	73324										
SIGLEC15	0	genome.wustl.edu	37	chr18	43422081	43422081	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ctgtccacaggtcccaggccCaggagtccaattatgaaaat	9	12	0	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	18	43422081	43422081	C	T	SNP	SIGLEC15	ENST00000389474	human	ensembl	69_37n	1	known	nonsense	c.916	p.Q306*	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC15	HGNC	ENSG00000197046	37	0	0	32	9	21.95	-	-	-	T	43422081	C	T	43422081	4	4	904	1	0	0	0	0	0	1	0	0	14399	595	21	4	938	4	SIGLEC15	18	43422081	Nonsense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		43422081	34655167	46	73325										
JAK3	0	genome.wustl.edu	37	chr19	17948829	17948829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ccaccacctcatggcgacagCcccggtaaatcttggtgaag	10	14	2	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	17948829	17948829	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.1613	p.G538D	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	75	0	0	38	12	24	-	-	-	T	17948829	C	T	17948829	3	4	904	1	0	0	0	0	1	0	0	0	7993	739	26	4	1813	4	JAK3	19	17948829	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09		17948829	41180154	47	73326										
ZNF260	0	genome.wustl.edu	37	chr19	37006039	37006039	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	ttttgcttcaggctaaaagtTtttctacattcattacattc	4	8	3	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	37006039	37006039	T	C	SNP	ZNF260	ENST00000523638	human	ensembl	69_37n	-1	known	silent	c.102	p.K34	0.687	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF260	HGNC	ENSG00000254004	56	0	0	34	8	19.05	-	-	-	C	37006039	T	C	37006039	2	2	904	1	0	0	0	0	0	0	0	1	17898	1838	64	5		5	ZNF260	19	37006039	Silent	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09	19057210	37006039	22122944	48	73327										
SHANK1	0	genome.wustl.edu	37	chr19	51217448	51217448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	cccctccctacctcccgaatCcgagtcatggtaattggggt	9	15	1	0			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	51217448	51217448	C	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.631	p.D211Y	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	57	0	0	10	29	74.36	-	-	-	A	51217448	C	A	51217448	3	1	904	1	0	0	0	0	1	0	0	0	14353	855	30	2	5934	2	SHANK1	19	51217448	Missense_Mutation	SNP	C	TCGA-EW-A1P4-01A-21D-A142-09	14211409	51217448	7911535	49	73328										
OSCAR	0	genome.wustl.edu	37	chr19	54600388	54600388	+	Frame_Shift_Del	DEL	G	G	-													0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	tcaaggtcacgttgaccccaGgggtcacaactgtagccggc							TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	54600388	54600388	G	-	DEL	OSCAR	ENST00000356532	human	ensembl	69_37n	-1	known	frame_shift_del	c.146	p.P49fs	0.998	smart_Ig_sub	smart_Ig_sub	-	no_errors	OSCAR	HGNC	ENSG00000170909	33	0	0	8	2	20	-	-	-	-	54600388	G	-	54600388	7	5	904	1	0	1	0	1	0	0	0	0	11358	1000	35	0	863	0	OSCAR	19	54600388	Frame_Shift_Del	DEL	G	TCGA-EW-A1P4-01A-21D-A142-09	3382940	54600388	4528595	50	73329										
YWHAH	0	genome.wustl.edu	37	chr22	32352686	32352686	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	acactaaacgaggattcctaTaaggactccacgctgatcat	7	11	1	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	22	32352686	32352686	T	C	SNP	YWHAH	ENST00000248975	human	ensembl	69_37n	1	known	silent	c.648	p.Y216	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAH	HGNC	ENSG00000128245	39	0	0	17	9	34.62	-	-	-	C	32352686	T	C	32352686	2	2	904	1	0	0	0	0	0	0	0	1	17601	1413	49	5		5	YWHAH	22	32352686	Silent	SNP	T	TCGA-EW-A1P4-01A-21D-A142-09		32352686	18951880	51	73330										
HCFC1	0	genome.wustl.edu	37	chrX	153224852	153224852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	4	0.828421135206094	1.13486842105263	2.72368421052632	0	0.0476190476190476	0.355507088331516	0	gggaggtcacggtgacagggGctttcccagcctggctggca	17	11	1	1			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	X	153224852	153224852	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1535	p.A512V	0.997	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	65	0	0	36	5	11.9	-	-	-	A	153224852	G	A	153224852	3	1	904	1	0	0	0	0	1	0	0	0	7042	1203	42	4	4644	4	HCFC1	23	153224852	Missense_Mutation	SNP	G	TCGA-EW-A1P4-01A-21D-A142-09		153224852	2045708	52	73331										
DMBX1	0	genome.wustl.edu	37	chr1	46977791	46977791	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ccctcccactcctattcctcGtccccgctgagcctcttccg	5	22	1	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	1	46977791	46977791	G	A	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	1	known	silent	c.774	p.S258	0.031	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	41	0	0	4	5	55.56	-	-	-	A	46977791	G	A	46977791	2	1	905	1	0	0	0	0	0	0	0	1	4614	1132	40	1		1	DMBX1	1	46977791	Silent	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		46977791	202272830	1	73332										
CELSR2	0	genome.wustl.edu	37	chr1	109814957	109814957	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	tgtaccagccctacggagacTcggccggctctctgcacagc	11	16	1	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	1	109814957	109814957	T	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.7984	p.S2662P	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	15	0	0	4	8	66.67	-	-	-	C	109814957	T	C	109814957	3	2	905	1	0	0	0	0	1	0	0	0	3251	1551	54	5	8098	5	CELSR2	1	109814957	Missense_Mutation	SNP	T	TCGA-EW-A1P5-01A-11D-A142-09	62837166	109814957	139435664	2	73333										
MYT1L	0	genome.wustl.edu	37	chr2	1926290	1926290	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	aacacctcttcagacctgtcCgagttcacagaggtggtatc	9	12	3	2			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	1926290	1926290	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	silent	c.1251	p.S417	0.141	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	74	0	0	20	17	45.95	-	-	-	T	1926290	C	T	1926290	2	4	905	1	0	0	0	0	0	0	0	1	10179	639	23	1		1	MYT1L	2	1926290	Silent	SNP	C	TCGA-EW-A1P5-01A-11D-A142-09		1926290	241273083	3	73334										
LBH	0	genome.wustl.edu	37	chr2	30457271	30457271	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	tggtctgggtttcttggcagCcccgactatctgagatcggc	13	11	3	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	30457271	30457271	C	T	SNP	LBH	ENST00000395323	human	ensembl	69_37n	1	known	silent	c.27	p.C9	1.000	pirsf_LBH	pirsf_LBH,prints_LBH	-	no_errors	LBH	HGNC	ENSG00000213626	65	0	0	34	12	26.09	-	-	-	T	30457271	C	T	30457271	2	4	905	1	0	0	0	0	0	0	0	1	8704	753	26	4		4	LBH	2	30457271	Silent	SNP	C	TCGA-EW-A1P5-01A-11D-A142-09	28530981	30457271	212742102	4	73335										
SF3B1	0	genome.wustl.edu	37	chr2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	agcactgatggtccgaacttTctgctgctcatccacaagac	8	13	2	2			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	24	0	0	8	13	61.9	-	-	-	C	198266834	T	C	198266834	3	2	905	1	0	0	0	0	1	0	0	0	14237	1792	62	5	1860	5	SF3B1	2	198266834	Missense_Mutation	SNP	T	TCGA-EW-A1P5-01A-11D-A142-09	167809563	198266834	44932539	5	73336										
ARPP21	0	genome.wustl.edu	37	chr3	35833914	35833914	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ggtcaacagggattccaaggCctaataggagtgcagcagcc	13	10	1	0			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	35833914	35833914	C	A	SNP	ARPP21	ENST00000417925	human	ensembl	69_37n	1	known	silent	c.2076	p.G692	0.982	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	60	0	0	33	15	31.25	-	-	-	A	35833914	C	A	35833914	2	1	905	1	0	0	0	0	0	0	0	1	982	726	26	4		4	ARPP21	3	35833914	Silent	SNP	C	TCGA-EW-A1P5-01A-11D-A142-09		35833914	162188516	6	73337										
DNAH1	0	genome.wustl.edu	37	chr3	52404645	52404645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ctaaggctcaagatggagaaCgaacaggtgagagccggcgg	16	8	1	3			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	52404645	52404645	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.6411	p.N2137K	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	31	0	0	16	10	38.46	-	-	-	A	52404645	C	A	52404645	3	1	905	1	0	0	0	0	1	0	0	0	4633	535	19	3	6565	3	DNAH1	3	52404645	Missense_Mutation	SNP	C	TCGA-EW-A1P5-01A-11D-A142-09	16570731	52404645	145617785	7	73338										
PIK3CA	0	genome.wustl.edu	37	chr3	178928086	178928087	+	Frame_Shift_Ins	INS	-	-	G													0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	cctcatggattagaagatttINSgctgaaccctattggtgtta							TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	3	178928086	178928087	-	G	INS	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	frame_shift_ins	c.1364_1365	p.L456fs	1.000:1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	95	0	0	40	5	11.11	-	-	-	G	178928087	-	G	178928086	7	5	905	1	0	1	1	0	0	0	0	0	11987	1821	63	0	1390	0	PIK3CA	3	178928086	Frame_Shift_Ins	INS	-	TCGA-EW-A1P5-01A-11D-A142-09	126523441	178928086	19094344	8	73339										
GHRHR	0	genome.wustl.edu	37	chr7	31013744	31013744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ccttctggtggctggttctcGctggctggggtgagcactga	16	10	2	2			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	7	31013744	31013744	G	A	SNP	GHRHR	ENST00000326139	human	ensembl	69_37n	1	known	missense	c.742	p.A248T	0.820	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128	31	0	0	10	16	61.54	-	-	-	A	31013744	G	A	31013744	3	1	905	1	0	0	0	0	1	0	0	0	6425	1087	38	1	768	1	GHRHR	7	31013744	Missense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		31013744	128124919	9	73340										
ADAM2	0	genome.wustl.edu	37	chr8	39695678	39695678	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	atccgcagcccgccgagcccGctgagcagaaacaagacgcg	12	16	0	3			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	8	39695678	39695678	G	A	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	silent	c.27	p.S9	0.001	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	59	0	0	65	10	13.33	-	-	-	A	39695678	G	A	39695678	2	1	905	1	0	0	0	0	0	0	0	1	241	1078	38	1		1	ADAM2	8	39695678	Silent	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		39695678	106668344	10	73341										
OR51E2	0	genome.wustl.edu	37	chr11	4703421	4703421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ggtggacacaataggagtgcGagaggacattggagtggcag	18	5	0	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	11	4703421	4703421	G	A	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	11	0	0	20	16	44.44	-	-	-	A	4703421	G	A	4703421	3	1	905	1	0	0	0	0	1	0	0	0	11168	1059	37	1	445	1	OR51E2	11	4703421	Missense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		4703421	130303095	11	73342										
USH1C	0	genome.wustl.edu	37	chr11	17518353	17518353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	agacggcaaccacaaggtcgAtccagtcctgtggggagaag	14	10	0	2			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	11	17518353	17518353	A	C	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	missense	c.2498	p.I833S	0.998	superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	33	0	0	15	5	25	-	-	-	C	17518353	A	C	17518353	3	2	905	1	0	0	0	0	1	0	0	0	17131	333	12	5	213	5	USH1C	11	17518353	Missense_Mutation	SNP	A	TCGA-EW-A1P5-01A-11D-A142-09	12814932	17518353	117488163	12	73343										
GALNT8	0	genome.wustl.edu	37	chr12	4874615	4874615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	agaggccagtgctagtgatcGctgcctgacagaccctggca	13	12	0	4			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	4874615	4874615	G	A	SNP	GALNT8	ENST00000252318	human	ensembl	69_37n	1	known	missense	c.1664	p.R555H	0.132	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	77	0	0	43	8	15.69	-	-	-	A	4874615	G	A	4874615	3	1	905	1	0	0	0	0	1	0	0	0	6269	1087	38	1	1702	1	GALNT8	12	4874615	Missense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		4874615	128977280	13	73344										
CREBL2	0	genome.wustl.edu	37	chr12	12788868	12788868	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	ggaagagttggtatccagtcGagaaagagctatatgtgccc	13	7	0	3			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	12788868	12788868	G	T	SNP	CREBL2	ENST00000228865	human	ensembl	69_37n	1	known	missense	c.173	p.R58L	0.999	pfam_bZIP_2,pfam_bZIP_1	pfam_bZIP_2,pfam_bZIP_1	-	no_errors	CREBL2	HGNC	ENSG00000111269	18	0	0	16	11	40.74	-	-	-	T	12788868	G	T	12788868	3	4	905	1	0	0	0	0	1	0	0	0	3892	1058	37	3	179	3	CREBL2	12	12788868	Missense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09	7914253	12788868	121063027	14	73345										
WDR66	0	genome.wustl.edu	37	chr12	122359385	122359385	+	Frame_Shift_Del	DEL	C	C	-													0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	gaggaggagaggaaaacgggCgaggaggaaggggaggagga							TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	12	122359385	122359385	C	-	DEL	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	frame_shift_del	c.174	p.E59fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	25	0	0	18	5	20.83	-	-	-	-	122359385	C	-	122359385	7	5	905	1	0	1	0	1	0	0	0	0	17414	755	27	0	176	0	WDR66	12	122359385	Frame_Shift_Del	DEL	C	TCGA-EW-A1P5-01A-11D-A142-09	109570517	122359385	11492510	15	73346										
GPC3	0	genome.wustl.edu	37	chrX	132887946	132887946	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	caggtcacgtcttgctcctcGgaggcactcattgatgtcca	10	13	3	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	X	132887946	132887946	G	A	SNP	GPC3	ENST00000394299	human	ensembl	69_37n	-1	known	nonsense	c.595	p.R199*	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257	139	0	0	126	31	19.75	-	-	-	A	132887946	G	A	132887946	4	1	905	1	0	0	0	0	0	1	0	0	6649	1124	39	1	1244	1	GPC3	23	132887946	Nonsense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09		132887946	22382614	16	73347										
MAGEA12	0	genome.wustl.edu	37	chrX	151900138	151900138	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0588235294117647	1	0.957008104689917	0.846335697399527	7.61702127659574	0	1	1	0	aacacactcagctcctcccaGattttctcctcaggggcaca	6	16	3	1			TCGA-EW-A1P5-01A-11D-A142-09	TCGA-EW-A1P5-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	84b4da42-9b73-4448-9185-a12857ab422f	a25a1ed5-8ba9-44fb-957f-3f928f2c0e28	X	151900138	151900138	G	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	missense	c.663	p.I221M	0.014	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	116	0	0	75	9	10.59	-	-	-	C	151900138	G	C	151900138	3	2	905	1	0	0	0	0	1	0	0	0	9233	932	33	2	285	2	MAGEA12	23	151900138	Missense_Mutation	SNP	G	TCGA-EW-A1P5-01A-11D-A142-09	19012192	151900138	3370422	17	73348										
FRRS1	0	genome.wustl.edu	37	chr1	100177672	100177672	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	atctcttacctgctattattCtagcagctgttcccatactc	4	13	2	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	1	100177672	100177672	C	T	SNP	FRRS1	ENST00000287474	human	ensembl	69_37n	-1	known	missense	c.1469	p.R490K	1.000	smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	71	0	0	48	21	30.43	-	-	-	T	100177672	C	T	100177672	3	4	906	1	0	0	0	0	1	0	0	0	6109	913	32	2	427	2	FRRS1	1	100177672	Missense_Mutation	SNP	C	TCGA-EW-A1P6-01A-11D-A142-09		100177672	149072949	1	73349										
CRIM1	0	genome.wustl.edu	37	chr2	36740755	36740755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	gcacttgtctcaccgtggatGgtcatcatcataaaaatgag	9	9	4	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	2	36740755	36740755	G	A	SNP	CRIM1	ENST00000280527	human	ensembl	69_37n	1	known	missense	c.1837	p.G613S	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Prot_inh_I15_antistasin-like,superfamily_Prot_inh_I14/15_hirudin/antisn,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	39	0	0	24	8	25	-	-	-	A	36740755	G	A	36740755	3	1	906	1	0	0	0	0	1	0	0	0	3903	1348	47	4	1879	4	CRIM1	2	36740755	Missense_Mutation	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09		36740755	206458618	2	73350										
ANKRD36B	0	genome.wustl.edu	37	chr2	98177305	98177305	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	ctttaattaccttctcagctCgttgtttctgaggagacact	7	10	2	2			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	2	98177305	98177305	C	G	SNP	ANKRD36B	ENST00000419390	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	23	0	0	11	9	45	-	-	-	G	98177305	C	G	98177305	1	3	906	0	1	0	0	0	0	0	0	0	665	884	31	3		3	ANKRD36B	2	98177305	RNA	SNP	C	TCGA-EW-A1P6-01A-11D-A142-09	61436550	98177305	145022068	3	73351										
ZDBF2	0	genome.wustl.edu	37	chr2	207170549	207170549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	aagaagtaaacctttccaagGaagtacgtactgatgtacag	9	7	0	2			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	2	207170549	207170549	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.1297	p.E433K	0.016	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	33	0	0	27	9	25	-	-	-	A	207170549	G	A	207170549	3	1	906	1	0	0	0	0	1	0	0	0	17695	1175	41	2	1307	2	ZDBF2	2	207170549	Missense_Mutation	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09	108993244	207170549	36028824	4	73352										
ITPR1	0	genome.wustl.edu	37	chr3	4774809	4774809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	agttctggtcaaccgttactAtggaaacgtcagaccttcgg	10	10	3	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	3	4774809	4774809	A	G	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.5213	p.Y1738C	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	41	0	0	22	11	33.33	-	-	-	G	4774809	A	G	4774809	3	3	906	1	0	0	0	0	1	0	0	0	7974	449	16	5	5420	5	ITPR1	3	4774809	Missense_Mutation	SNP	A	TCGA-EW-A1P6-01A-11D-A142-09		4774809	193247621	5	73353										
TIPARP	0	genome.wustl.edu	37	chr3	156396272	156396272	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	gattgtttgaagcaccacacTgtcttgccatatcattggca	8	10	2	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	3	156396272	156396272	T	A	SNP	TIPARP	ENST00000295924	human	ensembl	69_37n	1	known	silent	c.786	p.T262	0.105	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659	37	0	0	27	7	20.59	-	-	-	A	156396272	T	A	156396272	2	1	906	1	0	0	0	0	0	0	0	1	16019	1567	55	5		5	TIPARP	3	156396272	Silent	SNP	T	TCGA-EW-A1P6-01A-11D-A142-09	151621463	156396272	41626158	6	73354										
ATP13A4	0	genome.wustl.edu	37	chr3	193174859	193174859	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	aatgccagtcggtcacctccCatctcttggacaatgactgt	8	13	2	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	3	193174859	193174859	C	T	SNP	ATP13A4	ENST00000428352	human	ensembl	69_37n	-1	known	nonsense	c.764	p.W255*	0.988	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP13A4	HGNC	ENSG00000127249	32	0	0	13	15	53.57	-	-	-	T	193174859	C	T	193174859	4	4	906	1	0	0	0	0	0	1	0	0	1130	594	21	4	1805	4	ATP13A4	3	193174859	Nonsense_Mutation	SNP	C	TCGA-EW-A1P6-01A-11D-A142-09	36778587	193174859	4847571	7	73355										
MAP3K1	0	genome.wustl.edu	37	chr5	56178143	56178144	+	Frame_Shift_Ins	INS	-	-	A													0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	tgtcctgaaaacaaagactcINSagataaactttccccagtct							TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	5	56178143	56178144	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_ins	c.3116_3117	p.D1040fs	1.000:0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	25	0	0	11	8	42.11	-	-	-	A	56178144	-	A	56178143	7	5	906	1	0	1	1	0	0	0	0	0	9314	838	29	0	3170	0	MAP3K1	5	56178143	Frame_Shift_Ins	INS	-	TCGA-EW-A1P6-01A-11D-A142-09		56178143	124737117	8	73356										
PRPF4B	0	genome.wustl.edu	37	chr6	4056666	4056666	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	gattttatcgtgctcctgaaAtcagtaagtttcttaatgtt	7	6	2	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	6	4056666	4056666	A	G	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.2578	p.I860V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	76	0	0	55	25	31.25	-	-	-	G	4056666	A	G	4056666	3	3	906	1	0	0	0	0	1	0	0	0	12654	101	4	5	2624	5	PRPF4B	6	4056666	Missense_Mutation	SNP	A	TCGA-EW-A1P6-01A-11D-A142-09		4056666	167058401	9	73357										
PNPLA8	0	genome.wustl.edu	37	chr7	108155179	108155179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	gcctggcttataagccaggaTgccaggatctggagatctta	12	9	2	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	7	108155179	108155179	T	C	SNP	PNPLA8	ENST00000257694	human	ensembl	69_37n	-1	known	missense	c.757	p.I253V	0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241	49	0	0	28	18	39.13	-	-	-	C	108155179	T	C	108155179	3	2	906	1	0	0	0	0	1	0	0	0	12245	1464	51	5	1627	5	PNPLA8	7	108155179	Missense_Mutation	SNP	T	TCGA-EW-A1P6-01A-11D-A142-09		108155179	50983484	10	73358										
CYP11B2	0	genome.wustl.edu	37	chr8	143998609	143998609	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	ggcagcatcacacacaccatGcgtggtcctcccaagttgta	9	14	1	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	8	143998609	143998609	G	A	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	silent	c.261	p.R87	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	53	0	0	79	23	22.55	-	-	-	A	143998609	G	A	143998609	2	1	906	1	0	0	0	0	0	0	0	1	4177	1306	46	4		4	CYP11B2	8	143998609	Silent	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09		143998609	2365413	11	73359										
KIF26A	0	genome.wustl.edu	37	chr14	104641403	104641403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	acctgcggcccttccacccaCgcactgtggccctggacccc	9	21	0	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	14	104641403	104641403	C	T	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	missense	c.2278	p.R760C	0.956	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	14	0	0	5	5	50	-	-	-	T	104641403	C	T	104641403	3	4	906	1	0	0	0	0	1	0	0	0	8346	536	19	1	2324	1	KIF26A	14	104641403	Missense_Mutation	SNP	C	TCGA-EW-A1P6-01A-11D-A142-09		104641403	2708137	12	73360										
WDR76	0	genome.wustl.edu	37	chr15	44158472	44158472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	aaagagggtgcattcgtttgGtggagaataccttgtctctg	13	6	1	2			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	15	44158472	44158472	G	T	SNP	WDR76	ENST00000263795	human	ensembl	69_37n	1	known	missense	c.1763	p.G588V	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	68	0	0	50	14	21.88	-	-	-	T	44158472	G	T	44158472	3	4	906	1	0	0	0	0	1	0	0	0	17423	1261	44	4	1813	4	WDR76	15	44158472	Missense_Mutation	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09		44158472	58372920	13	73361										
PRPF8	0	genome.wustl.edu	37	chr17	1576724	1576724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	tgcggcacttaggcaggatgCggcactcgaagccacacatg	13	12	0	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	17	1576724	1576724	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.3584	p.R1195H	1.000	superfamily_Cupredoxin	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	38	0	0	36	4	10	-	-	-	T	1576724	C	T	1576724	3	4	906	1	0	0	0	0	1	0	0	0	12656	768	27	1	3507	1	PRPF8	17	1576724	Missense_Mutation	SNP	C	TCGA-EW-A1P6-01A-11D-A142-09		1576724	79618486	14	73362										
MBTD1	0	genome.wustl.edu	37	chr17	49270817	49270817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	atagttttactggtgctgcaAtggagccagtttccctgagg	12	8	0	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	17	49270817	49270817	A	G	SNP	MBTD1	ENST00000415868	human	ensembl	69_37n	-1	known	missense	c.1427	p.I476T	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258	45	0	0	26	13	33.33	-	-	-	G	49270817	A	G	49270817	3	3	906	1	0	0	0	0	1	0	0	0	9431	101	4	5	475	5	MBTD1	17	49270817	Missense_Mutation	SNP	A	TCGA-EW-A1P6-01A-11D-A142-09	47694093	49270817	31924393	15	73363										
SMCHD1	0	genome.wustl.edu	37	chr18	2707824	2707827	+	Frame_Shift_Del	DEL	ACTG	ACTG	-													0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	ggtgcgttaagaattgaaatActgaataaaaaaggggaagc							TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	ACTG	ACTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	18	2707824	2707827	ACTG	-	DEL	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	frame_shift_del	c.2166_2169	p.L723fs	1.000:0.999:1.000:1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	30	0	0	23	3	11.54	-	-	-	-	2707827	ACTG	-	2707824	7	5	906	1	0	1	0	1	0	0	0	0	14877	381	14	0	2232	0	SMCHD1	18	2707824	Frame_Shift_Del	DEL	ACTG	TCGA-EW-A1P6-01A-11D-A142-09		2707824	75369424	16	73364										
PLEKHG2	0	genome.wustl.edu	37	chr19	39905892	39905892	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	atgtcagggacctccgcagcAtcgtggaggtaaggcgggca	16	10	1	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	19	39905892	39905892	A	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.370	p.I124F	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	20	0	0	7	7	50	-	-	-	T	39905892	A	T	39905892	3	4	906	1	0	0	0	0	1	0	0	0	12143	217	8	5	376	5	PLEKHG2	19	39905892	Missense_Mutation	SNP	A	TCGA-EW-A1P6-01A-11D-A142-09		39905892	19223091	17	73365										
MEGF8	0	genome.wustl.edu	37	chr19	42848602	42848602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	cctcctcgcagtgtccagccGccagctgcctgggcctgggc	13	18	0	0			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	19	42848602	42848602	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.1798	p.A600T	0.805	smart_Plexin-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	19	0	0	8	7	46.67	-	-	-	A	42848602	G	A	42848602	3	1	906	1	0	0	0	0	1	0	0	0	9534	1087	38	1	1840	1	MEGF8	19	42848602	Missense_Mutation	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09	2942710	42848602	16280381	18	73366										
NLGN3	0	genome.wustl.edu	37	chrX	70389880	70389880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	gctgcagacattgcacccctAtaacacctttgccgcagggt	9	14	0	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	X	70389880	70389880	A	C	SNP	NLGN3	ENST00000358741	human	ensembl	69_37n	1	known	missense	c.2480	p.Y827S	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338	36	0	0	14	6	30	-	-	-	C	70389880	A	C	70389880	3	2	906	1	0	0	0	0	1	0	0	0	10535	449	16	5	2506	5	NLGN3	23	70389880	Missense_Mutation	SNP	A	TCGA-EW-A1P6-01A-11D-A142-09		70389880	84880680	19	73367										
DIAPH2	0	genome.wustl.edu	37	chrX	96684718	96684718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.913683819682119	1	0	1.11111111111111	1	1	0	aggtgcagcattcagagaccGtcgaaagcggattccaagga	13	9	1	1			TCGA-EW-A1P6-01A-11D-A142-09	TCGA-EW-A1P6-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eef5cea9-82f6-4001-8e2c-701e43a9787a	9363f17c-f3ba-4219-8de9-15f0cf99dcd2	X	96684718	96684718	G	A	SNP	DIAPH2	ENST00000324765	human	ensembl	69_37n	1	known	missense	c.3215	p.R1072H	1.000	NULL	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH2	HGNC	ENSG00000147202	43	0	0	39	11	22	-	-	-	A	96684718	G	A	96684718	3	1	906	1	0	0	0	0	1	0	0	0	4555	1145	40	1	3317	1	DIAPH2	23	96684718	Missense_Mutation	SNP	G	TCGA-EW-A1P6-01A-11D-A142-09	26294838	96684718	58585842	20	73368										
NTRK1	0	genome.wustl.edu	37	chr1	156834219	156834219	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcctgggggagctgagaaacCtgtgagggaaacggggactg	19	7	0	2			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	1	156834219	156834219	C	G	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.286	p.L96V	1.000	prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	55	0	0	81	10	10.99	-	-	-	G	156834219	C	G	156834219	3	3	907	1	0	0	0	0	1	0	0	0	10779	695	24	4	422	4	NTRK1	1	156834219	Missense_Mutation	SNP	C	TCGA-EW-A1P7-01A-21D-A142-09		156834219	92416402	1	73369										
TTN	0	genome.wustl.edu	37	chr2	179635029	179635029	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggctgtcacatcctttggcTttttaatgatcttgacagct	8	9	2	2			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	2	179635029	179635029	T	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.8399	p.K2800M	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0	66	14	17.5	-	-	-	A	179635029	T	A	179635029	3	1	907	1	0	0	0	0	1	0	0	0	16832	1609	56	5	102897	5	TTN	2	179635029	Missense_Mutation	SNP	T	TCGA-EW-A1P7-01A-21D-A142-09		179635029	63564344	2	73370										
OR6B2	0	genome.wustl.edu	37	chr2	240969517	240969517	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggccagaagcacacactcGgtgcacaccagggagctgaa	13	12	0	2			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	2	240969517	240969517	G	A	SNP	OR6B2	ENST00000402971	human	ensembl	69_37n	-1	known	silent	c.330	p.T110	0.005	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083	19	0	0	16	7	30.43	-	-	-	A	240969517	G	A	240969517	2	1	907	1	0	0	0	0	0	0	0	1	11261	1103	39	1		1	OR6B2	2	240969517	Silent	SNP	G	TCGA-EW-A1P7-01A-21D-A142-09	61334488	240969517	2229856	3	73371										
TTC14	0	genome.wustl.edu	37	chr3	180324055	180324055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttttagtgtgaagatcggagTtgactattttaaagttggac	11	3	0	3			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	3	180324055	180324055	T	C	SNP	TTC14	ENST00000296015	human	ensembl	69_37n	1	known	missense	c.944	p.V315A	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,superfamily_NA-bd_OB-fold-like,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728	98	0	0	69	9	11.54	-	-	-	C	180324055	T	C	180324055	3	2	907	1	0	0	0	0	1	0	0	0	16778	1725	60	5	974	5	TTC14	3	180324055	Missense_Mutation	SNP	T	TCGA-EW-A1P7-01A-21D-A142-09		180324055	17698375	4	73372										
IL11RA	0	genome.wustl.edu	37	chr9	34655661	34655661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttgtcctggagtgactgccGggtaagtgccccacctgcct	13	13	0	1			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	9	34655661	34655661	G	A	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	missense	c.160	p.G54R	0.998	smart_Ig_sub,pfscan_Ig-like	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	31	0	0	37	10	21.28	-	-	-	A	34655661	G	A	34655661	3	1	907	1	0	0	0	0	1	0	0	0	7677	1130	39	1	166	1	IL11RA	9	34655661	Missense_Mutation	SNP	G	TCGA-EW-A1P7-01A-21D-A142-09		34655661	106557770	5	73373										
PRMT8	0	genome.wustl.edu	37	chr12	3686131	3686131	+	Frame_Shift_Del	DEL	G	G	-													0	0	1	0	0	0	1	1	0	gtggatccaaagcaagtggtGaccaatgcctgtttgataaa							TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	12	3686131	3686131	G	-	DEL	PRMT8	ENST00000382622	human	ensembl	69_37n	1	known	frame_shift_del	c.807	p.T270fs	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218	26	0	0	42	6	12.24	-	-	-	-	3686131	G	-	3686131	7	5	907	1	0	1	0	1	0	0	0	0	12623	1277	45	0	833	0	PRMT8	12	3686131	Frame_Shift_Del	DEL	G	TCGA-EW-A1P7-01A-21D-A142-09		3686131	130165764	6	73374										
DNAH3	0	genome.wustl.edu	37	chr16	21170742	21170742	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ggggcggccagtgtgagctcGaggcgccctgtagctcccat	16	13	0	1			TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	16	21170742	21170742	G	C	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	silent	c.21	p.L7	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	49	0	0	26	5	16.13	-	-	-	C	21170742	G	C	21170742	2	2	907	1	0	0	0	0	0	0	0	1	4639	1045	37	3		3	DNAH3	16	21170742	Silent	SNP	G	TCGA-EW-A1P7-01A-21D-A142-09		21170742	69184011	7	73375										
MTF1	0	genome.wustl.edu	37	chr1	38323086	38323086	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ttgcttcatgatctatcaggTgaaagccctcttcaccccct	6	14	5	2			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	38323086	38323086	T	A	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.245	p.H82L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	125	0	0	153	52	25.37	-	-	-	A	38323086	T	A	38323086	3	1	908	1	0	0	0	0	1	0	0	0	9994	1696	59	5	2056	5	MTF1	1	38323086	Missense_Mutation	SNP	T	TCGA-EW-A1P8-01A-11D-A142-09		38323086	210927535	1	73376										
NOTCH2	0	genome.wustl.edu	37	chr1	120458147	120458147	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	accactgtgactgggtgttcGctcagcagcatttgaggaag	13	9	1	2			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	120458147	120458147	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	nonsense	c.7198	p.R2400*	1.000	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	66	0	0	41	20	32.79	-	-	-	A	120458147	G	A	120458147	4	1	908	1	0	0	0	0	0	1	0	0	10620	1095	38	1	221	1	NOTCH2	1	120458147	Nonsense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	82135061	120458147	128792474	2	73377										
KLHL12	0	genome.wustl.edu	37	chr1	202862535	202862535	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ccacataaatatggtcattcAgcagggctactcctgcacct	7	13	2	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	202862535	202862535	A	G	SNP	KLHL12	ENST00000435533	human	ensembl	69_37n	-1	known	missense	c.1526	p.L509P	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153	81	0	0	81	47	36.72	-	-	-	G	202862535	A	G	202862535	3	3	908	1	0	0	0	0	1	0	0	0	8421	188	7	5	302	5	KLHL12	1	202862535	Missense_Mutation	SNP	A	TCGA-EW-A1P8-01A-11D-A142-09	82404388	202862535	46388086	3	73378										
PCNXL2	0	genome.wustl.edu	37	chr1	233394715	233394715	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gaggtgacttgctttgtaccCgttcccttatggagccccgg	12	12	0	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	233394715	233394715	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.893	p.R298P	0.001	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	38	0	0	71	17	19.32	-	-	-	G	233394715	C	G	233394715	3	3	908	1	0	0	0	0	1	0	0	0	11665	652	23	3	5640	3	PCNXL2	1	233394715	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09	30532180	233394715	15855906	4	73379										
TMEM150A	0	genome.wustl.edu	37	chr2	85827041	85827041	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ttgccaaccaccaagaggccCgcagcgttggtgcagcctgt	12	14	0	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	85827041	85827041	C	G	SNP	TMEM150A	ENST00000334462	human	ensembl	69_37n	-1	known	silent	c.369	p.A123	0.001	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150A	HGNC	ENSG00000168890	56	0	0	50	43	45.74	-	-	-	G	85827041	C	G	85827041	2	3	908	1	0	0	0	0	0	0	0	1	16162	639	23	3		3	TMEM150A	2	85827041	Silent	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		85827041	157372332	5	73380										
SLC9A4	0	genome.wustl.edu	37	chr2	103141572	103141572	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	cgccgccagaacaccttaagGgagagcatgaggaaaggtca	13	10	1	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	103141572	103141572	G	C	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	1	known	missense	c.1908	p.R636S	0.906	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	85	0	0	64	94	59.49	-	-	-	C	103141572	G	C	103141572	3	2	908	1	0	0	0	0	1	0	0	0	14805	1223	43	4	1946	4	SLC9A4	2	103141572	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	17314531	103141572	140057801	6	73381										
ANAPC1	0	genome.wustl.edu	37	chr2	112619981	112619981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	caaaccttatattagtaatcGtttctgtccacaaatggtca	5	9	2	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	112619981	112619981	G	A	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.1247	p.T416M	0.027	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	19	0	0	58	12	17.14	-	-	-	A	112619981	G	A	112619981	3	1	908	1	0	0	0	0	1	0	0	0	598	1145	40	1	4743	1	ANAPC1	2	112619981	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	9478409	112619981	130579392	7	73382										
CELSR3	0	genome.wustl.edu	37	chr3	48677877	48677877	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ccgccagcatagatgcgaccGtaagaggcagctggcacagc	13	13	0	2			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	3	48677877	48677877	G	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	nonsense	c.9156	p.Y3052*	0.968	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	15	0	0	6	6	50	-	-	-	C	48677877	G	C	48677877	4	2	908	1	0	0	0	0	0	1	0	0	3252	1140	40	3	805	3	CELSR3	3	48677877	Nonsense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		48677877	149344553	8	73383										
APC	0	genome.wustl.edu	37	chr5	112164629	112164629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gacgttgcgagaagttggaaGtgtgaaagcattgatggaat	15	3	0	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	5	112164629	112164629	G	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.1703	p.S568N	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	126	0	0	53	63	54.31	-	-	-	A	112164629	G	A	112164629	3	1	908	1	0	0	0	0	1	0	0	0	764	1029	36	4	1753	4	APC	5	112164629	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		112164629	68750631	9	73384										
SGCD	0	genome.wustl.edu	37	chr5	156022038	156022038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	caataatgaagtggtagtagGagctgaaagattacgagttt	12	3	0	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	5	156022038	156022038	G	T	SNP	SGCD	ENST00000337851	human	ensembl	69_37n	1	known	missense	c.479	p.G160V	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	70	0	0	41	30	42.25	-	-	-	T	156022038	G	T	156022038	3	4	908	1	0	0	0	0	1	0	0	0	14289	1174	41	2	497	2	SGCD	5	156022038	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	43857409	156022038	24893222	10	73385										
HSP90AB1	0	genome.wustl.edu	37	chr6	44218045	44218045	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tagttggagaaggaacgagaGaaggaaattagtgatgatga	15	1	0	5			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	6	44218045	44218045	G	A	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	1	known	silent	c.666	p.E222	1.000	pfam_Hsp90,superfamily_ATPase-like_ATP-bd,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	56	0	0	66	39	37.14	-	-	-	A	44218045	G	A	44218045	2	1	908	1	0	0	0	0	0	0	0	1	7455	933	33	2		2	HSP90AB1	6	44218045	Silent	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		44218045	126897022	11	73386										
ZNF12	0	genome.wustl.edu	37	chr7	6731888	6731888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gtgattaacaaaaacagtgtCcttttggaaggctttctggc	10	7	1	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	7	6731888	6731888	C	T	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	missense	c.685	p.D229N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	52	0	0	61	28	31.46	-	-	-	T	6731888	C	T	6731888	3	4	908	1	0	0	0	0	1	0	0	0	17814	855	30	2	1412	2	ZNF12	7	6731888	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		6731888	152406775	12	73387										
LRCH4	0	genome.wustl.edu	37	chr7	100180051	100180051	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	accagctggcacgccgcctcGggcacctcgggaaaccggtt	13	16	0	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	7	100180051	100180051	G	C	SNP	LRCH4	ENST00000310300	human	ensembl	69_37n	-1	known	silent	c.252	p.P84	0.005	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454	40	0	0	23	35	60.34	-	-	-	C	100180051	G	C	100180051	2	2	908	1	0	0	0	0	0	0	0	1	9001	1103	39	3		3	LRCH4	7	100180051	Silent	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	93448163	100180051	58958612	13	73388										
RNF19A	0	genome.wustl.edu	37	chr8	101271360	101271360	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ggcaagccactggatgaaccGccagcatgacttcgggtggc	14	12	0	2			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	8	101271360	101271360	G	C	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	silent	c.1941	p.G647	0.003	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	95	0	0	96	40	29.41	-	-	-	C	101271360	G	C	101271360	2	2	908	1	0	0	0	0	0	0	0	1	13556	1074	38	3		3	RNF19A	8	101271360	Silent	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		101271360	45092662	14	73389										
CASP7	0	genome.wustl.edu	37	chr10	115486182	115486182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tgacttcctcttcgcctattCcacggttccaggtatcatgt	7	13	2	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	10	115486182	115486182	C	T	SNP	CASP7	ENST00000369321	human	ensembl	69_37n	1	known	missense	c.770	p.S257F	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP7	HGNC	ENSG00000165806	59	0	0	20	16	44.44	-	-	-	T	115486182	C	T	115486182	3	4	908	1	0	0	0	0	1	0	0	0	2701	855	30	2	870	2	CASP7	10	115486182	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		115486182	20048565	15	73390										
ACCSL	0	genome.wustl.edu	37	chr11	44081434	44081434	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	caggagcagaaggaggctttGatagtgaagcagttggagga	17	4	0	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	44081434	44081434	G	C	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.1671	p.L557F	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	119	0	0	298	75	20.11	-	-	-	C	44081434	G	C	44081434	3	2	908	1	0	0	0	0	1	0	0	0	134	1281	45	2	1725	2	ACCSL	11	44081434	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		44081434	90925082	16	73391										
LRRC32	0	genome.wustl.edu	37	chr11	76371884	76371884	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	aaatggagcagtttgttctcCcgcaggtcaagccaggtgag	13	9	2	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	76371884	76371884	C	G	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	silent	c.753	p.R251	0.990	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	42	0	0	39	11	22	-	-	-	G	76371884	C	G	76371884	2	3	908	1	0	0	0	0	0	0	0	1	9053	610	22	4		4	LRRC32	11	76371884	Silent	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09	32290450	76371884	58634632	17	73392										
OR10G4	0	genome.wustl.edu	37	chr11	123886542	123886542	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	atgaccttggtgtccccaagCggcagggctatctccttcca	10	14	1	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	123886542	123886542	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	silent	c.261	p.S87	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	99	1	1	51	18	26.09	-	-	-	T	123886542	C	T	123886542	2	4	908	1	0	0	0	0	0	0	0	1	10974	767	27	1		1	OR10G4	11	123886542	Silent	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09	47514658	123886542	11119974	18	73393										
CD9	0	genome.wustl.edu	37	chr12	6342590	6342590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ccttccagttcttcggcttcCtcttggtgatattcgccatt	7	13	2	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	12	6342590	6342590	C	A	SNP	CD9	ENST00000009180	human	ensembl	69_37n	1	known	missense	c.286	p.L96I	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	102	0	0	100	122	54.95	-	-	-	A	6342590	C	A	6342590	3	1	908	1	0	0	0	0	1	0	0	0	3075	681	24	4	300	4	CD9	12	6342590	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		6342590	127509305	19	73394										
ITPR2	0	genome.wustl.edu	37	chr12	26640139	26640139	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	atcatagagaactttaaagaAtttttctgactttttttgtt	5	4	2	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	12	26640139	26640139	A	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.5416	p.F1806V	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	99	0	0	153	67	30.45	-	-	-	C	26640139	A	C	26640139	3	2	908	1	0	0	0	0	1	0	0	0	7975	101	4	5	2761	5	ITPR2	12	26640139	Missense_Mutation	SNP	A	TCGA-EW-A1P8-01A-11D-A142-09	20297549	26640139	107211756	20	73395										
COG3	0	genome.wustl.edu	37	chr13	46070345	46070345	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	atgttagaagatgtacaggaGcggctcgtctaccgaaccca	11	10	1	2			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	13	46070345	46070345	G	A	SNP	COG3	ENST00000349995	human	ensembl	69_37n	1	known	silent	c.1386	p.E462	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	71	0	0	22	33	60	-	-	-	A	46070345	G	A	46070345	2	1	908	1	0	0	0	0	0	0	0	1	3689	962	34	4		4	COG3	13	46070345	Silent	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		46070345	69099533	21	73396										
DHRS1	0	genome.wustl.edu	37	chr14	24760122	24760122	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ggcacacggaggaaggagggCaggtaggaggccagccagcc	19	10	0	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	14	24760122	24760122	C	G	SNP	DHRS1	ENST00000288111	human	ensembl	69_37n	-1	known	silent	c.885	p.L295	0.972	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH	-	no_errors	DHRS1	HGNC	ENSG00000157379	61	0	0	40	25	38.46	-	-	-	G	24760122	C	G	24760122	2	3	908	1	0	0	0	0	0	0	0	1	4522	697	25	4		4	DHRS1	14	24760122	Silent	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		24760122	82589418	22	73397										
HECTD1	0	genome.wustl.edu	37	chr14	31582337	31582337	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tgctgtaatatttttgttgtAatttttttgctagtgaattc	7	3	0	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	14	31582337	31582337	A	C	SNP	HECTD1	ENST00000554882	human	ensembl	69_37n	-1	novel	nonsense	c.1220	p.L407*	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HECTD1	HGNC	ENSG00000092148	116	0	0	81	82	50.31	-	-	-	C	31582337	A	C	31582337	4	2	908	1	0	0	0	0	0	1	0	0	7090	358	13	5	1749	5	HECTD1	14	31582337	Nonsense_Mutation	SNP	A	TCGA-EW-A1P8-01A-11D-A142-09	6822215	31582337	75767203	23	73398										
PDILT	0	genome.wustl.edu	37	chr16	20387485	20387485	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tgctttctggctaatttgtcGtctcaaccaaacgactaagg	8	10	2	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	16	20387485	20387485	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	nonsense	c.448	p.R150*	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	68	0	0	50	23	31.08	-	-	-	A	20387485	G	A	20387485	4	1	908	1	0	0	0	0	0	1	0	0	11747	1153	40	1	1342	1	PDILT	16	20387485	Nonsense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		20387485	69967268	24	73399										
KRTAP4-11	0	genome.wustl.edu	37	chr17	39274161	39274161	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tggagatgctgcagctggggTggcagcaggtgggctggcag	21	7	0	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	17	39274161	39274161	T	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	69_37n	-1	known	missense	c.407	p.H136R	0.002	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721	19	0	0	19	29	59.18	-	-	-	C	39274161	T	C	39274161	3	2	908	1	0	0	0	0	1	0	0	0	8603	1696	59	5	184	5	KRTAP4-11	17	39274161	Missense_Mutation	SNP	T	TCGA-EW-A1P8-01A-11D-A142-09		39274161	41921049	25	73400										
ATXN7L3	0	genome.wustl.edu	37	chr17	42274624	42274624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ggcgattcggctgctgttccGacccattcccaggcacttct	10	15	1	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	17	42274624	42274624	G	A	SNP	ATXN7L3	ENST00000454077	human	ensembl	69_37n	-1	known	missense	c.328	p.R110W	0.998	NULL	pfam_SAGA_su_Sgf11,pfam_SCA7_dom	-	no_errors	ATXN7L3	HGNC	ENSG00000087152	42	0	0	15	17	53.12	-	-	-	A	42274624	G	A	42274624	3	1	908	1	0	0	0	0	1	0	0	0	1222	1057	37	1	776	1	ATXN7L3	17	42274624	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	3000463	42274624	38920586	26	73401										
SYDE1	0	genome.wustl.edu	37	chr19	15223187	15223187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	cgcttctcctggaccacctgCgcctcgtctcctccttccat	6	20	2	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	19	15223187	15223187	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	missense	c.1609	p.R537C	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	24	0	0	35	17	32.69	-	-	-	T	15223187	C	T	15223187	3	4	908	1	0	0	0	0	1	0	0	0	15527	768	27	1	1635	1	SYDE1	19	15223187	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		15223187	43905796	27	73402										
SYDE1	0	genome.wustl.edu	37	chr19	15223341	15223341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	cagtgcagtggacttcaagcAccacatcgaggtgctgcact	11	12	1	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	19	15223341	15223341	A	G	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	1	known	missense	c.1763	p.H588R	0.998	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	12	0	0	19	21	52.5	-	-	-	G	15223341	A	G	15223341	3	3	908	1	0	0	0	0	1	0	0	0	15527	159	6	5	1789	5	SYDE1	19	15223341	Missense_Mutation	SNP	A	TCGA-EW-A1P8-01A-11D-A142-09	154	15223341	43905642	28	73403										
CHD6	0	genome.wustl.edu	37	chr20	40049505	40049505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gaaagccctctgtagcccagGagtctggtttgccacctcta	10	13	3	0			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	20	40049505	40049505	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.5770	p.P1924S	0.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	114	0	0	40	67	62.62	-	-	-	A	40049505	G	A	40049505	3	1	908	1	0	0	0	0	1	0	0	0	3358	1174	41	2	2405	2	CHD6	20	40049505	Missense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		40049505	22976015	29	73404										
ZNFX1	0	genome.wustl.edu	37	chr20	47886966	47886966	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gtggcaaaaagaaatgtctcGaagttgtccttggacatgca	11	7	1	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	20	47886966	47886966	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.1383	p.F461	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	73	0	0	21	24	53.33	-	-	-	A	47886966	G	A	47886966	2	1	908	1	0	0	0	0	0	0	0	1	18298	1049	37	1		1	ZNFX1	20	47886966	Silent	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09	7837461	47886966	15138554	30	73405										
BRWD1	0	genome.wustl.edu	37	chr21	40600483	40600484	+	Frame_Shift_Del	DEL	CA	CA	-													0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ttgacgcaatacaagaaagtCaataacatctggcatatcat							TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	21	40600483	40600484	CA	-	DEL	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	frame_shift_del	c.3151_3150	p.D1051fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	23	0	0	18	10	35.71	-	-	-	-	40600484	CA	-	40600483	7	5	908	1	0	1	0	1	0	0	0	0	1533	826	29	0	4114	0	BRWD1	21	40600483	Frame_Shift_Del	DEL	CA	TCGA-EW-A1P8-01A-11D-A142-09		40600483	7529412	31	73406										
TOM1	0	genome.wustl.edu	37	chr22	35734720	35734720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	tttcagggtaaaatacgaagCcccccaagcaacagacggcc	9	13	1	1			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	22	35734720	35734720	C	T	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	1	known	missense	c.1163	p.A388V	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	31	0	0	12	18	60	-	-	-	T	35734720	C	T	35734720	3	4	908	1	0	0	0	0	1	0	0	0	16446	739	26	4	1209	4	TOM1	22	35734720	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09		35734720	15569846	32	73407										
ATG4A	0	genome.wustl.edu	37	chrX	107396925	107396925	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ttgatctggaggaagattttGagattctgagtgtgtagaat	13	2	2	5			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	107396925	107396925	G	T	SNP	ATG4A	ENST00000372232	human	ensembl	69_37n	1	known	nonsense	c.1180	p.E394*	1.000	NULL	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	149	0	0	75	64	46.04	-	-	-	T	107396925	G	T	107396925	4	4	908	1	0	0	0	0	0	1	0	0	1100	1291	45	2	1230	2	ATG4A	23	107396925	Nonsense_Mutation	SNP	G	TCGA-EW-A1P8-01A-11D-A142-09		107396925	47873635	33	73408										
MAGEC2	0	genome.wustl.edu	37	chrX	141291033	141291033	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	ttcagcacttcccagatgacCtcctcagaggcacagttgcc	8	15	2	3			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	141291033	141291033	C	G	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.741	p.E247D	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	69	0	0	43	58	57.43	-	-	-	G	141291033	C	G	141291033	3	3	908	1	0	0	0	0	1	0	0	0	9252	680	24	4	384	4	MAGEC2	23	141291033	Missense_Mutation	SNP	C	TCGA-EW-A1P8-01A-11D-A142-09	33894108	141291033	13979527	34	73409										
MAMLD1	0	genome.wustl.edu	37	chrX	149639325	149639327	+	In_Frame_Del	DEL	CAG	CAG	-													0.0571428571428571	2	0.994628167771038	0.671511627906977	0.805813953488372	0.575581395348837	1	1	0	gtaatcttctaagccagcaaCagcagcagcagcagcagcag							TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	149639325	149639327	CAG	-	DEL	MAMLD1	ENST00000432680	human	ensembl	69_37n	1	known	in_frame_del	c.1405_1407	p.Q472in_frame_del	0.006:0.000:0.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	50	0	0	30	4	11.76	-	-	-	-	149639327	CAG	-	149639325	7	5	908	1	0	1	0	1	0	0	0	0	9279	479	17	0	1490	0	MAMLD1	23	149639325	In_Frame_Del	DEL	CAG	TCGA-EW-A1P8-01A-11D-A142-09	8348292	149639325	5631235	35	73410										
PDIK1L	0	genome.wustl.edu	37	chr1	26448989	26448989	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ggaaatgctggctgcaaaccCtcaggatcgtccagatgctt	11	11	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	26448989	26448989	C	G	SNP	PDIK1L	ENST00000374269	human	ensembl	69_37n	1	known	missense	c.947	p.P316R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PDIK1L	HGNC	ENSG00000175087	32	0	0	28	11	28.21	-	-	-	G	26448989	C	G	26448989	3	3	909	1	0	0	0	0	1	0	0	0	11746	681	24	4	953	4	PDIK1L	1	26448989	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		26448989	222801632	1	73411										
THEM5	0	genome.wustl.edu	37	chr1	151819737	151819738	+	Frame_Shift_Del	DEL	GG	GG	-													0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	caggaggcaggaggcaggcaGgggaggcaggaggcaggcag							TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	151819737	151819738	GG	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.642_641	p.P214fs	0.878:0.888	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	9	0	0	6	3	33.33	-	-	-	-	151819738	GG	-	151819737	7	5	909	1	0	1	0	1	0	0	0	0	15954	1015	35	0		0	THEM5	1	151819737	Frame_Shift_Del	DEL	GG	TCGA-EW-A1PA-01A-11D-A142-09	125370748	151819737	97430884	2	73412										
OR2T8	0	genome.wustl.edu	37	chr1	248084511	248084511	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tacttcctcctgagccaactTtccctcatggacgtgatgct	7	14	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	248084511	248084511	T	C	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	silent	c.192	p.L64	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	65	0	0	42	11	20.37	-	-	-	C	248084511	T	C	248084511	2	2	909	1	0	0	0	0	0	0	0	1	11103	1828	64	5		5	OR2T8	1	248084511	Silent	SNP	T	TCGA-EW-A1PA-01A-11D-A142-09	96264774	248084511	1166110	3	73413										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452474	43452474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ctcgaagggccggcacagctCggtcttgtagcgcgtggagt	16	11	1	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	43452474	43452474	C	T	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.469	p.E157K	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	18	0	0	12	5	29.41	-	-	-	T	43452474	C	T	43452474	3	4	909	1	0	0	0	0	1	0	0	0	17743	893	31	1	1019	1	ZFP36L2	2	43452474	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		43452474	199746899	4	73414										
SLC5A7	0	genome.wustl.edu	37	chr2	108604643	108604643	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tgtggaaggactgatagctaTcatcgtgttctaccttctaa	9	8	3	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	108604643	108604643	T	G	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	1	known	missense	c.32	p.I11S	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	67	0	0	36	14	28	-	-	-	G	108604643	T	G	108604643	3	3	909	1	0	0	0	0	1	0	0	0	14759	1435	50	5	34	5	SLC5A7	2	108604643	Missense_Mutation	SNP	T	TCGA-EW-A1PA-01A-11D-A142-09	65152169	108604643	134594730	5	73415										
TTN	0	genome.wustl.edu	37	chr2	179478997	179478997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tcttagatccaccatcatcgCgtggtgggttccatgttaga	10	10	2	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	179478997	179478997	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41423	p.R13808H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	49	0	0	20	6	23.08	-	-	-	T	179478997	C	T	179478997	3	4	909	1	0	0	0	0	1	0	0	0	16832	768	27	1	58970	1	TTN	2	179478997	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	70874354	179478997	63720376	6	73416										
PDS5A	0	genome.wustl.edu	37	chr4	39865035	39865035	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gttcctgagcaagcttcattAtggcactaccagcagctaat	8	11	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	39865035	39865035	A	T	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	missense	c.2687	p.I896K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	47	0	0	42	9	17.65	-	-	-	T	39865035	A	T	39865035	3	4	909	1	0	0	0	0	1	0	0	0	11764	449	16	5	1366	5	PDS5A	4	39865035	Missense_Mutation	SNP	A	TCGA-EW-A1PA-01A-11D-A142-09		39865035	151289241	7	73417										
RBM47	0	genome.wustl.edu	37	chr4	40440362	40440362	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ttgtcggccgcgctggcgtaGacgatcacgtccagcacgcc	13	15	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	40440362	40440362	G	C	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	silent	c.549	p.V183	0.301	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	11	0	0	4	6	60	-	-	-	C	40440362	G	C	40440362	2	2	909	1	0	0	0	0	0	0	0	1	13224	929	33	2		2	RBM47	4	40440362	Silent	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09	575327	40440362	150713914	8	73418										
DCHS2	0	genome.wustl.edu	37	chr4	155161799	155161799	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	agaaatttggatgagcagctCatattcagtcatttcttcaa	7	7	5	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	155161799	155161799	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.5884	p.E1962K	0.096	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	51	0	0	39	10	20.41	-	-	-	T	155161799	C	T	155161799	3	4	909	1	0	0	0	0	1	0	0	0	4319	835	29	2	2878	2	DCHS2	4	155161799	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	114721437	155161799	35992477	9	73419										
PRDM9	0	genome.wustl.edu	37	chr5	23527272	23527272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	acacacaggggagaagccctAtgtctgcagggagtgtgggc	16	9	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	5	23527272	23527272	A	G	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	1	known	missense	c.2075	p.Y692C	0.522	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	27	0	0	16	9	36	-	-	-	G	23527272	A	G	23527272	3	3	909	1	0	0	0	0	1	0	0	0	12544	449	16	5	2113	5	PRDM9	5	23527272	Missense_Mutation	SNP	A	TCGA-EW-A1PA-01A-11D-A142-09		23527272	157387988	10	73420										
PLEKHG1	0	genome.wustl.edu	37	chr6	151151728	151151731	+	Frame_Shift_Del	DEL	AGGA	AGGA	-													0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tcttcctcaggtttctagagAggaaggatctccccagctgt							TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	AGGA	AGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	6	151151728	151151731	AGGA	-	DEL	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	frame_shift_del	c.1481_1484	p.E495fs	0.999:0.720:0.870:0.852	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	34	0	0	11	6	35.29	-	-	-	-	151151731	AGGA	-	151151728	7	5	909	1	0	1	0	1	0	0	0	0	12142	304	11	0	1535	0	PLEKHG1	6	151151728	Frame_Shift_Del	DEL	AGGA	TCGA-EW-A1PA-01A-11D-A142-09		151151728	19963339	11	73421										
OSR2	0	genome.wustl.edu	37	chr8	99961319	99961319	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tgtacggtctcagcgcggtaCagaccatgcacatgaaccac	10	13	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	8	99961319	99961319	C	G	SNP	OSR2	ENST00000457907	human	ensembl	69_37n	1	known	missense	c.502	p.Q168E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	20	0	0	10	7	41.18	-	-	-	G	99961319	C	G	99961319	3	3	909	1	0	0	0	0	1	0	0	0	11367	479	17	4	141	4	OSR2	8	99961319	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		99961319	46402703	12	73422										
NOL8	0	genome.wustl.edu	37	chr9	95077794	95077794	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gagtcatactcacgatcattTctcataatatcatcatcact	3	11	7	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	95077794	95077794	T	C	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	silent	c.1113	p.R371	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	53	0	0	14	13	48.15	-	-	-	C	95077794	T	C	95077794	2	2	909	1	0	0	0	0	0	0	0	1	10599	1780	62	5		5	NOL8	9	95077794	Silent	SNP	T	TCGA-EW-A1PA-01A-11D-A142-09		95077794	46135637	13	73423										
TSC1	0	genome.wustl.edu	37	chr9	135772703	135772703	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ttatccttttctgagcctcaTacctgctctctgcggcctgc	7	15	3	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	135772703	135772703	T	A	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.2843	p.Y948F	1.000	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	61	0	0	49	22	30.99	-	-	-	A	135772703	T	A	135772703	3	1	909	1	0	0	0	0	1	0	0	0	16701	1406	49	5	659	5	TSC1	9	135772703	Missense_Mutation	SNP	T	TCGA-EW-A1PA-01A-11D-A142-09	40694909	135772703	5440728	14	73424										
MUC5B	0	genome.wustl.edu	37	chr11	1267311	1267311	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tccacagctaccagctttacAcccatcccctccttcaccct	2	21	1	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	1267311	1267311	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.9210	p.T3070	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	69	0	0	36	6	14.29	-	-	-	C	1267311	A	C	1267311	2	2	909	1	0	0	0	0	0	0	0	1	10051	146	6	5		5	MUC5B	11	1267311	Silent	SNP	A	TCGA-EW-A1PA-01A-11D-A142-09		1267311	133739205	15	73425										
MRGPRX4	0	genome.wustl.edu	37	chr11	18195501	18195501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	cctctgcggcctgcccttcgGcattctgggggccctaattt	11	15	2	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	18195501	18195501	G	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	69_37n	1	known	missense	c.698	p.G233V	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	69	0	0	43	15	25.86	-	-	-	T	18195501	G	T	18195501	3	4	909	1	0	0	0	0	1	0	0	0	9841	1203	42	4	700	4	MRGPRX4	11	18195501	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09	16928190	18195501	116811015	16	73426										
SLC6A5	0	genome.wustl.edu	37	chr11	20676318	20676318	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ccattcttagctcaacaccgCggggagcgttacaagaacat	9	12	2	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	20676318	20676318	C	G	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	1	known	silent	c.2298	p.R766	0.542	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	29	0	0	17	6	26.09	-	-	-	G	20676318	C	G	20676318	2	3	909	1	0	0	0	0	0	0	0	1	14776	755	27	3		3	SLC6A5	11	20676318	Silent	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	2480817	20676318	114330198	17	73427										
OR4S2	0	genome.wustl.edu	37	chr11	55419087	55419087	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ggcaggcgcaaagccctctcCacctgtggctcccacattgc	10	17	1	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55419087	55419087	C	G	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	silent	c.708	p.S236	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	32	0	0	17	10	37.04	-	-	-	G	55419087	C	G	55419087	2	3	909	1	0	0	0	0	0	0	0	1	11156	581	21	4		4	OR4S2	11	55419087	Silent	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	34742769	55419087	79587429	18	73428										
OR5AS1	0	genome.wustl.edu	37	chr11	55798211	55798211	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	acaaatgtttttcttcgcttCttttgctgatgctgagtgcc	8	9	2	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55798211	55798211	C	A	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	1	known	missense	c.317	p.S106Y	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	49	0	0	31	7	18.42	-	-	-	A	55798211	C	A	55798211	3	1	909	1	0	0	0	0	1	0	0	0	11219	913	32	2	319	2	OR5AS1	11	55798211	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	379124	55798211	79208305	19	73429										
NADSYN1	0	genome.wustl.edu	37	chr11	71212359	71212359	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tctttccaggtgctacagctCgagagggcagagccacagtc	12	12	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	71212359	71212359	C	T	SNP	NADSYN1	ENST00000527963	human	ensembl	69_37n	1	known	nonsense	c.139	p.R47*	0.028	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	8	0	0	9	11	55	-	-	-	T	71212359	C	T	71212359	4	4	909	1	0	0	0	0	0	1	0	0	10210	871	31	1	2164	1	NADSYN1	11	71212359	Nonsense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	15414148	71212359	63794157	20	73430										
TAS2R13	0	genome.wustl.edu	37	chr12	11061465	11061465	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	atgcatgtttatttgtatcaGatttaaaaataagaagacca	6	4	1	3			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	12	11061465	11061465	G	C	SNP	TAS2R13	ENST00000390677	human	ensembl	69_37n	-1	known	missense	c.433	p.L145V	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R13	HGNC	ENSG00000212128	48	0	0	27	16	37.21	-	-	-	C	11061465	G	C	11061465	3	2	909	1	0	0	0	0	1	0	0	0	15659	933	33	2	482	2	TAS2R13	12	11061465	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09		11061465	122790430	21	73431										
MYCBP2	0	genome.wustl.edu	37	chr13	77656125	77656125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tgcttgaatttgagactccaGcacctaaaaaggcgatatat	8	8	0	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	13	77656125	77656125	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.11040	p.C3680W	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	25	0	0	13	7	35	-	-	-	C	77656125	G	C	77656125	3	2	909	1	0	0	0	0	1	0	0	0	10090	963	34	4	3076	4	MYCBP2	13	77656125	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09		77656125	37513753	22	73432										
EIF2B2	0	genome.wustl.edu	37	chr14	75470300	75470300	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	atcagcaggagtccctgcacAaactgttgacatccggaggc	11	12	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	14	75470300	75470300	A	T	SNP	EIF2B2	ENST00000266126	human	ensembl	69_37n	1	known	nonsense	c.331	p.K111*	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718	42	0	0	40	12	23.08	-	-	-	T	75470300	A	T	75470300	4	4	909	1	0	0	0	0	0	1	0	0	5036	131	5	5	341	5	EIF2B2	14	75470300	Nonsense_Mutation	SNP	A	TCGA-EW-A1PA-01A-11D-A142-09		75470300	31879240	23	73433										
RPUSD2	0	genome.wustl.edu	37	chr15	40861751	40861751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tgagctgtcccccgggccccCgaagccggctggccgggaag	16	16	0	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	15	40861751	40861751	C	T	SNP	RPUSD2	ENST00000315616	human	ensembl	69_37n	1	known	missense	c.215	p.P72L	0.000	NULL	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133	10	0	0	4	4	50	-	-	-	T	40861751	C	T	40861751	3	4	909	1	0	0	0	0	1	0	0	0	13753	652	23	1	217	1	RPUSD2	15	40861751	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		40861751	61669641	24	73434										
SEPT1	0	genome.wustl.edu	37	chr16	30393112	30393112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gtccactgagtccccaaagcCaggtgtgtccacaagggtca	11	13	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	30393112	30393112	C	T	SNP	SEPT1	ENST00000321367	human	ensembl	69_37n	-1	known	missense	c.289	p.G97S	1.000	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	42	0	0	32	13	28.89	-	-	-	T	30393112	C	T	30393112	3	4	909	1	0	0	0	0	1	0	0	0	14147	594	21	4	861	4	SEPT1	16	30393112	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		30393112	59961641	25	73435										
TP53	0	genome.wustl.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0	21	18	45	-	-	-	A	7578212	G	A	7578212	4	1	909	1	0	0	0	0	0	1	0	0	16477	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09		7578212	73616998	26	73436										
PRCD	0	genome.wustl.edu	37	chr17	74538648	74538648	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tgtttagggagaaagaacctCtgaagtaagccctcacctct	9	10	3	3			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	74538648	74538648	C	T	SNP	PRCD	ENST00000586148	human	ensembl	69_37n	1	known	silent	c.157	p.L53	0.998	NULL	NULL	-	no_errors	PRCD	HGNC	ENSG00000214140	31	0	0	28	7	20	-	-	-	T	74538648	C	T	74538648	2	4	909	1	0	0	0	0	0	0	0	1	12529	912	32	2		2	PRCD	17	74538648	Silent	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	66960436	74538648	6656562	27	73437										
RPTOR	0	genome.wustl.edu	37	chr17	78831617	78831617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ctgtcggcatcttcccctacGtgctgaagctgctccagagc	10	15	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	78831617	78831617	G	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	1	known	missense	c.1426	p.V476L	1.000	superfamily_ARM-type_fold,prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	31	0	0	20	4	16.67	-	-	-	T	78831617	G	T	78831617	3	4	909	1	0	0	0	0	1	0	0	0	13751	1145	40	3	1476	3	RPTOR	17	78831617	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09	4292969	78831617	2363593	28	73438										
DNMT1	0	genome.wustl.edu	37	chr19	10259657	10259657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gtagaagtaggtcttcccgtCgtccccctccagcagggact	11	14	1	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	19	10259657	10259657	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.2623	p.D875N	0.538	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	35	0	0	8	6	42.86	-	-	-	T	10259657	C	T	10259657	3	4	909	1	0	0	0	0	1	0	0	0	4710	884	31	1	2335	1	DNMT1	19	10259657	Missense_Mutation	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09		10259657	48869326	29	73439										
CRNKL1	0	genome.wustl.edu	37	chr20	20023016	20023016	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	atagttgatccaaagataaaTgtagcgcttccagtgcctct	8	9	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	20023016	20023016	T	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1600	p.I534F	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	77	0	0	34	25	42.37	-	-	-	A	20023016	T	A	20023016	3	1	909	1	0	0	0	0	1	0	0	0	3921	1464	51	5	974	5	CRNKL1	20	20023016	Missense_Mutation	SNP	T	TCGA-EW-A1PA-01A-11D-A142-09		20023016	43002504	30	73440										
PTPRT	0	genome.wustl.edu	37	chr20	41100907	41100907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	gctctcctcccttgctcaccGtcttcctcagtctgcaccac	5	20	5	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	41100907	41100907	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.1449	p.D483	0.908	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	25	0	0	30	10	25	-	-	-	A	41100907	G	A	41100907	2	1	909	1	0	0	0	0	0	0	0	1	12895	1159	40	1		1	PTPRT	20	41100907	Silent	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09	21077891	41100907	21924613	31	73441										
CCNB3	0	genome.wustl.edu	37	chrX	50051515	50051515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	tccttcacaggcataagctgGaagtcacaccagtagtagcc	9	12	2	0			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	50051515	50051515	G	A	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.346	p.E116K	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	53	0	0	36	11	23.4	-	-	-	A	50051515	G	A	50051515	3	1	909	1	0	0	0	0	1	0	0	0	2943	1175	41	2	360	2	CCNB3	23	50051515	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09		50051515	105219045	32	73442										
CXorf57	0	genome.wustl.edu	37	chrX	105921404	105921404	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	ctggatagagtgcatatcgtCggtatcttggatatctgtaa	11	6	2	1			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	105921404	105921404	C	T	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	1	known	silent	c.2484	p.V828	0.207	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	57	0	0	35	16	31.37	-	-	-	T	105921404	C	T	105921404	2	4	909	1	0	0	0	0	0	0	0	1	4144	871	31	1		1	CXorf57	23	105921404	Silent	SNP	C	TCGA-EW-A1PA-01A-11D-A142-09	55869889	105921404	49349156	33	73443										
MTM1	0	genome.wustl.edu	37	chrX	149826404	149826404	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.117647058823529	4	0.618839524158816	1.44210526315789	1.80263157894737	1.20175438596491	1	1	0	actgctcagctgacatccttGgccatgctgatgttggatag	11	10	1	2			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	149826404	149826404	G	C	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.1164	p.L388F	0.998	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	44	0	0	29	9	23.68	-	-	-	C	149826404	G	C	149826404	3	2	909	1	0	0	0	0	1	0	0	0	10009	1339	47	4	1202	4	MTM1	23	149826404	Missense_Mutation	SNP	G	TCGA-EW-A1PA-01A-11D-A142-09	43905000	149826404	5444156	34	73444										
ERMAP	0	genome.wustl.edu	37	chr1	43296767	43296767	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aatctgagtaaagaggacacCgtgatcctgcaggttgcagg	13	8	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	43296767	43296767	C	A	SNP	ERMAP	ENST00000372514	human	ensembl	69_37n	1	known	silent	c.414	p.T138	0.356	smart_Ig_sub,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010	32	0	0	34	10	22.73	-	-	-	A	43296767	C	A	43296767	2	1	910	1	0	0	0	0	0	0	0	1	5271	639	23	3		3	ERMAP	1	43296767	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		43296767	205953854	1	73445										
NEXN	0	genome.wustl.edu	37	chr1	78395103	78395103	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aaatggaaaggcaaagaagaGaagatgaaaaaaggaaagca	12	2	0	4			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	78395103	78395103	G	C	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	1	known	missense	c.967	p.E323Q	1.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	52	0	0	65	18	21.69	-	-	-	C	78395103	G	C	78395103	3	2	910	1	0	0	0	0	1	0	0	0	10427	943	33	2	997	2	NEXN	1	78395103	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	35098336	78395103	170855518	2	73446										
KIAA1324	0	genome.wustl.edu	37	chr1	109743374	109743374	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tagactagagtacaagtactCcaagctggtgatgaatgcta	10	7	0	4			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	109743374	109743374	C	G	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	missense	c.2825	p.S942C	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	30	0	0	46	19	29.23	-	-	-	G	109743374	C	G	109743374	3	3	910	1	0	0	0	0	1	0	0	0	8275	855	30	2	2907	2	KIAA1324	1	109743374	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	31348271	109743374	139507247	3	73447										
KCND3	0	genome.wustl.edu	37	chr1	112329593	112329593	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gccctgcgtttatcagctctCtgattctggtggtaaatccg	10	11	3	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	112329593	112329593	C	G	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	missense	c.1242	p.Q414H	1.000	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	33	0	0	42	15	26.32	-	-	-	G	112329593	C	G	112329593	3	3	910	1	0	0	0	0	1	0	0	0	8074	912	32	2	749	2	KCND3	1	112329593	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2586219	112329593	136921028	4	73448										
SHE	0	genome.wustl.edu	37	chr1	154473950	154473950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aatcttgcccttgtccagctCgggccccagggaggaagggg	15	12	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	154473950	154473950	C	T	SNP	SHE	ENST00000304760	human	ensembl	69_37n	-1	known	missense	c.553	p.E185K	0.982	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	36	0	0	48	20	29.41	-	-	-	T	154473950	C	T	154473950	3	4	910	1	0	0	0	0	1	0	0	0	14365	893	31	1	958	1	SHE	1	154473950	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	42144357	154473950	94776671	5	73449										
ARHGEF11	0	genome.wustl.edu	37	chr1	156915883	156915883	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agcagcagcgggtacttggtGagccgctgcatctcagagat	14	10	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	156915883	156915883	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.2766	p.L922	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	9	0	0	21	10	32.26	-	-	-	A	156915883	G	A	156915883	2	1	910	1	0	0	0	0	0	0	0	1	898	1277	45	2		2	ARHGEF11	1	156915883	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	2441933	156915883	92334738	6	73450										
OR10J5	0	genome.wustl.edu	37	chr1	159505696	159505696	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcaaccagagttaaaatgtaGacagttaggaaaaccacaaa	8	7	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	159505696	159505696	G	C	SNP	OR10J5	ENST00000334857	human	ensembl	69_37n	-1	known	silent	c.102	p.V34	0.713	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10J5	HGNC	ENSG00000184155	22	0	0	39	11	22	-	-	-	C	159505696	G	C	159505696	2	2	910	1	0	0	0	0	0	0	0	1	10985	929	33	2		2	OR10J5	1	159505696	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	2589813	159505696	89744925	7	73451										
PIGM	0	genome.wustl.edu	37	chr1	160000705	160000705	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcagtcaaatacagcatgtaGaagtacggagaaaagttgtg	12	5	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	160000705	160000705	G	C	SNP	PIGM	ENST00000368090	human	ensembl	69_37n	-1	known	missense	c.825	p.F275L	1.000	pfam_Mannosyltransferase_DXD	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315	21	0	0	38	17	30.91	-	-	-	C	160000705	G	C	160000705	3	2	910	1	0	0	0	0	1	0	0	0	11966	933	33	2	450	2	PIGM	1	160000705	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	495009	160000705	89249916	8	73452										
ZNF678	0	genome.wustl.edu	37	chr1	227842649	227842649	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	acataagagaattcatactgGagagaaaccctacaaatgca	7	8	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	227842649	227842649	G	C	SNP	ZNF678	ENST00000397097	human	ensembl	69_37n	1	known	missense	c.863	p.G288A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450	31	0	0	26	5	16.13	-	-	-	C	227842649	G	C	227842649	3	2	910	1	0	0	0	0	1	0	0	0	18181	1174	41	2	877	2	ZNF678	1	227842649	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	67841944	227842649	21407972	9	73453										
GRHL1	0	genome.wustl.edu	37	chr2	10126310	10126310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttcccagaagggagtgaaggGgttgcctcttaacattcaag	12	8	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	10126310	10126310	G	A	SNP	GRHL1	ENST00000324907	human	ensembl	69_37n	1	known	missense	c.1169	p.G390E	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317	38	0	0	40	15	27.27	-	-	-	A	10126310	G	A	10126310	3	1	910	1	0	0	0	0	1	0	0	0	6814	1232	43	4	1203	4	GRHL1	2	10126310	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		10126310	233073063	10	73454										
NBAS	0	genome.wustl.edu	37	chr2	15374818	15374818	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	acagcttcatcatgaagtttCtctttttctgatcgggacag	8	9	4	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	15374818	15374818	C	G	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.5997	p.E1999D	0.010	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	22	0	0	41	12	22.64	-	-	-	G	15374818	C	G	15374818	3	3	910	1	0	0	0	0	1	0	0	0	10258	912	32	2	1146	2	NBAS	2	15374818	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	5248508	15374818	227824555	11	73455										
SMC6	0	genome.wustl.edu	37	chr2	17896164	17896164	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atatctcattccgaaactcaGaaactattatcggtggccgt	7	10	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	17896164	17896164	G	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.1772	p.S591F	0.978	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	37	0	0	47	9	16.07	-	-	-	A	17896164	G	A	17896164	3	1	910	1	0	0	0	0	1	0	0	0	14876	942	33	2	1633	2	SMC6	2	17896164	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	2521346	17896164	225303209	12	73456										
OTOF	0	genome.wustl.edu	37	chr2	26688938	26688938	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gatgtcagcagggtgcaggtCcgtggcctggaatggggaga	19	7	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	26688938	26688938	C	G	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.4507	p.D1503H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	82	0	0	111	26	18.98	-	-	-	G	26688938	C	G	26688938	3	3	910	1	0	0	0	0	1	0	0	0	11376	855	30	2	1711	2	OTOF	2	26688938	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	8792774	26688938	216510435	13	73457										
PPM1B	0	genome.wustl.edu	37	chr2	44428733	44428733	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cgggatggacaggagtggttCaactgcagtgggagttatga	17	5	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	44428733	44428733	C	G	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	1	known	nonsense	c.395	p.S132*	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	60	0	0	68	18	20.93	-	-	-	G	44428733	C	G	44428733	4	3	910	1	0	0	0	0	0	1	0	0	12413	838	29	2	397	2	PPM1B	2	44428733	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	17739795	44428733	198770640	14	73458										
MTIF2	0	genome.wustl.edu	37	chr2	55470655	55470655	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aaccgtagaattgatctcttCttccacagtagatggccata	7	10	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	55470655	55470655	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	69_37n	-1	known	silent	c.1461	p.K487	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	114	0	0	149	47	23.98	-	-	-	T	55470655	C	T	55470655	2	4	910	1	0	0	0	0	0	0	0	1	10006	912	32	2		2	MTIF2	2	55470655	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	11041922	55470655	187728718	15	73459										
SMEK2	0	genome.wustl.edu	37	chr2	55806833	55806833	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	acccttttcacatttgtcttCtgaagtattggtcaaaagtg	7	8	4	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	55806833	55806833	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	missense	c.1450	p.E484K	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	77	0	0	108	19	14.96	-	-	-	T	55806833	C	T	55806833	3	4	910	1	0	0	0	0	1	0	0	0	14883	922	32	2	1135	2	SMEK2	2	55806833	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	336178	55806833	187392540	16	73460										
RGPD4	0	genome.wustl.edu	37	chr2	108487221	108487221	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tttccatccctgtgtctgctGatggatttaaatttggcatt	8	8	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	108487221	108487221	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.2761	p.D921H	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	73	0	0	78	39	33.33	-	-	-	C	108487221	G	C	108487221	3	2	910	1	0	0	0	0	1	0	0	0	13371	1290	45	2	2839	2	RGPD4	2	108487221	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	52680388	108487221	134712152	17	73461										
NEB	0	genome.wustl.edu	37	chr2	152435968	152435968	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	acttgccagtgcctgaccttCtttggcagcgctgatggaca	11	12	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	152435968	152435968	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.16588	p.E5530Q	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	124	0	0	185	49	20.94	-	-	-	G	152435968	C	G	152435968	3	3	910	1	0	0	0	0	1	0	0	0	10374	922	32	2	9410	2	NEB	2	152435968	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	43948747	152435968	90763405	18	73462										
PLA2R1	0	genome.wustl.edu	37	chr2	160825803	160825803	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aaagccacatctctggctctGattattcacagttctttctc	5	12	5	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	160825803	160825803	G	C	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	missense	c.2728	p.Q910E	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	43	0	0	83	28	25	-	-	-	C	160825803	G	C	160825803	3	2	910	1	0	0	0	0	1	0	0	0	12084	1299	45	2	1719	2	PLA2R1	2	160825803	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	8389835	160825803	82373570	19	73463										
GALNT3	0	genome.wustl.edu	37	chr2	166611525	166611525	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ccatgtaaaatttttacactGaaggcggtgttttatttcaa	7	6	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	166611525	166611525	G	A	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	nonsense	c.1441	p.Q481*	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	41	0	0	62	20	24.39	-	-	-	A	166611525	G	A	166611525	4	1	910	1	0	0	0	0	0	1	0	0	6264	1299	45	2	476	2	GALNT3	2	166611525	Nonsense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	5785722	166611525	76587848	20	73464										
FASTKD1	0	genome.wustl.edu	37	chr2	170428450	170428450	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tcacaactgatgggtcgaaaTtgaaacactctccaggagaa	9	9	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	170428450	170428450	T	A	SNP	FASTKD1	ENST00000453153	human	ensembl	69_37n	-1	known	missense	c.90	p.Q30H	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399	40	0	0	62	18	22.5	-	-	-	A	170428450	T	A	170428450	3	1	910	1	0	0	0	0	1	0	0	0	5731	1490	52	5	2509	5	FASTKD1	2	170428450	Missense_Mutation	SNP	T	TCGA-EW-A1PB-01A-11D-A142-09	3816925	170428450	72770923	21	73465										
BMPR2	0	genome.wustl.edu	37	chr2	203420345	203420345	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cacagtcaattgggccaaccCctgtctgcttacagctgaca	8	14	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	203420345	203420345	C	G	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	missense	c.1957	p.P653A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	25	0	0	38	10	20.83	-	-	-	G	203420345	C	G	203420345	3	3	910	1	0	0	0	0	1	0	0	0	1476	623	22	4	2003	4	BMPR2	2	203420345	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	32991895	203420345	39779028	22	73466										
PLEKHM3	0	genome.wustl.edu	37	chr2	208811101	208811101	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttgtacctaccttatactttGaagtatcccagttgtggact	7	9	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	208811101	208811101	G	C	SNP	PLEKHM3	ENST00000427836	human	ensembl	69_37n	-1	known	nonsense	c.1682	p.S561*	0.977	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385	45	0	0	44	15	25.42	-	-	-	C	208811101	G	C	208811101	4	2	910	1	0	0	0	0	0	1	0	0	12156	1294	45	2	623	2	PLEKHM3	2	208811101	Nonsense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	5390756	208811101	34388272	23	73467										
DES	0	genome.wustl.edu	37	chr2	220283541	220283541	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	caggagctcaatgaccgcttCgccaactacatcgagaaggt	10	12	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	220283541	220283541	C	T	SNP	DES	ENST00000373960	human	ensembl	69_37n	1	known	silent	c.357	p.F119	1.000	pfam_F,superfamily_Prefoldin	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	DES	HGNC	ENSG00000175084	12	0	0	10	7	41.18	-	-	-	T	220283541	C	T	220283541	2	4	910	1	0	0	0	0	0	0	0	1	4485	883	31	1		1	DES	2	220283541	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	11472440	220283541	22915832	24	73468										
CNTN6	0	genome.wustl.edu	37	chr3	1444013	1444013	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tttattcagattctgtaccgGcaaaacagacagagtaaaac	7	8	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	1444013	1444013	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	silent	c.2829	p.R943	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	29	0	0	31	14	31.11	-	-	-	A	1444013	G	A	1444013	2	1	910	1	0	0	0	0	0	0	0	1	3675	1190	42	4		4	CNTN6	3	1444013	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		1444013	196578417	25	73469										
CYP8B1	0	genome.wustl.edu	37	chr3	42917067	42917067	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agccaaaggagagggggtccAtgacgaaggtgaagtactgg	17	6	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	42917067	42917067	A	C	SNP	CYP8B1	ENST00000316161	human	ensembl	69_37n	-1	known	missense	c.242	p.M81R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432	32	0	0	22	16	42.11	-	-	-	C	42917067	A	C	42917067	3	2	910	1	0	0	0	0	1	0	0	0	4229	217	8	5	1267	5	CYP8B1	3	42917067	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	41473054	42917067	155105363	26	73470										
NBEAL2	0	genome.wustl.edu	37	chr3	47045824	47045824	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tgcgcctacggcccccctctCaaggctacctaagcagccgc	9	19	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	47045824	47045824	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	69_37n	1	known	nonsense	c.6139	p.Q2047*	1.000	superfamily_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796	12	0	0	6	6	50	-	-	-	T	47045824	C	T	47045824	4	4	910	1	0	0	0	0	0	1	0	0	10261	827	29	2	6285	2	NBEAL2	3	47045824	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	4128757	47045824	150976606	27	73471										
COL7A1	0	genome.wustl.edu	37	chr3	48613091	48613091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ggggccctgttcgcctgagtCccccttggggcctcgacgcc	14	17	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	48613091	48613091	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.5947	p.D1983Y	0.989	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	16	0	0	5	7	58.33	-	-	-	A	48613091	C	A	48613091	3	1	910	1	0	0	0	0	1	0	0	0	3734	855	30	2	3075	2	COL7A1	3	48613091	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1567267	48613091	149409339	28	73472										
BBX	0	genome.wustl.edu	37	chr3	107451818	107451818	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tttagatcctactcaaatggGaggcctgagtatgctgctgt	11	8	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	107451818	107451818	G	C	SNP	BBX	ENST00000325805	human	ensembl	69_37n	1	known	missense	c.617	p.G206A	1.000	pfam_TF_HMG_box_BBX_DUF2028	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	92	0	0	116	35	23.03	-	-	-	C	107451818	G	C	107451818	3	2	910	1	0	0	0	0	1	0	0	0	1347	1174	41	2	631	2	BBX	3	107451818	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	58838727	107451818	90570612	29	73473										
KIAA2018	0	genome.wustl.edu	37	chr3	113379916	113379916	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ctgatgccatggcttgttttCagaagggtaaactccagaaa	10	8	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	113379916	113379916	C	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.613	p.E205Q	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	56	0	0	90	29	24.37	-	-	-	G	113379916	C	G	113379916	3	3	910	1	0	0	0	0	1	0	0	0	8320	835	29	2	6128	2	KIAA2018	3	113379916	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	5928098	113379916	84642514	30	73474										
SLC15A2	0	genome.wustl.edu	37	chr3	121658238	121658238	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cctggaagattgaagacattCcagccaacaaaatgtccatt	7	10	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	121658238	121658238	C	G	SNP	SLC15A2	ENST00000489711	human	ensembl	69_37n	1	known	missense	c.1804	p.P602A	0.027	tigrfam_Pep_H_symport	pfam_Oligopeptide_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_Pep_H_symport	-	no_errors	SLC15A2	HGNC	ENSG00000163406	53	0	0	88	30	25.42	-	-	-	G	121658238	C	G	121658238	3	3	910	1	0	0	0	0	1	0	0	0	14488	855	30	2	1882	2	SLC15A2	3	121658238	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	8278322	121658238	76364192	31	73475										
MYLK	0	genome.wustl.edu	37	chr3	123376021	123376021	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttcagactcctggcttggctCactggttccatacacgttga	9	12	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	123376021	123376021	C	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	nonsense	c.4240	p.E1414*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	51	0	0	61	28	31.46	-	-	-	A	123376021	C	A	123376021	4	1	910	1	0	0	0	0	0	1	0	0	10128	835	29	2	1548	2	MYLK	3	123376021	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1717783	123376021	74646409	32	73476										
XRN1	0	genome.wustl.edu	37	chr3	142095323	142095323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tctctaacataaacttacttTctcctagatcctcttccaat	1	13	3	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	142095323	142095323	T	C	SNP	XRN1	ENST00000498077	human	ensembl	69_37n	-1	known	missense	c.1225	p.K409E	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	XRN1	HGNC	ENSG00000114127	21	0	0	32	15	31.91	-	-	-	C	142095323	T	C	142095323	3	2	910	1	0	0	0	0	1	0	0	0	17556	1780	62	5	2367	5	XRN1	3	142095323	Missense_Mutation	SNP	T	TCGA-EW-A1PB-01A-11D-A142-09	18719302	142095323	55927107	33	73477										
UGT2A1	0	genome.wustl.edu	37	chr4	70504739	70504739	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tcatctggtcagtgagctctGataaggctgccggtacatag	12	9	4	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	70504739	70504739	G	C	SNP	UGT2A1	ENST00000457664	human	ensembl	69_37n	-1	known	nonsense	c.620	p.S207*	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610	24	0	0	17	17	50	-	-	-	C	70504739	G	C	70504739	4	2	910	1	0	0	0	0	0	1	0	0	17050	1294	45	2		2	UGT2A1	4	70504739	Nonsense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		70504739	120649537	34	73478										
ELF2	0	genome.wustl.edu	37	chr4	139980675	139980675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tggttattaatggtgcacctGcattaactgactgaactgcc	9	9	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	139980675	139980675	G	A	SNP	ELF2	ENST00000379550	human	ensembl	69_37n	-1	known	missense	c.1244	p.A415V	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF2	HGNC	ENSG00000109381	32	0	0	25	12	32.43	-	-	-	A	139980675	G	A	139980675	3	1	910	1	0	0	0	0	1	0	0	0	5091	1319	46	4	541	4	ELF2	4	139980675	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	69475936	139980675	51173601	35	73479										
GUCY1A3	0	genome.wustl.edu	37	chr4	156634276	156634276	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gacctcaaaggccaaatgatCtacattgttgaatccagtgc	8	10	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	156634276	156634276	C	G	SNP	GUCY1A3	ENST00000296518	human	ensembl	69_37n	1	known	missense	c.1113	p.I371M	1.000	pfam_Haem_no_assoc-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116	32	0	0	18	9	33.33	-	-	-	G	156634276	C	G	156634276	3	3	910	1	0	0	0	0	1	0	0	0	6945	903	32	2	1146	2	GUCY1A3	4	156634276	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	16653601	156634276	34520000	36	73480										
IQGAP2	0	genome.wustl.edu	37	chr5	75969810	75969810	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tatatagccaaagtactgaaGaattcgatccatgagaaatt	7	6	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	75969810	75969810	G	A	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	silent	c.3243	p.K1081	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	47	0	0	54	25	31.65	-	-	-	A	75969810	G	A	75969810	2	1	910	1	0	0	0	0	0	0	0	1	7869	933	33	2		2	IQGAP2	5	75969810	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		75969810	104945450	37	73481										
CCNH	0	genome.wustl.edu	37	chr5	86703897	86703897	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttcatattccagtatctgttCaagtgccttctcctgtccaa	5	12	4	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	86703897	86703897	C	G	SNP	CCNH	ENST00000256897	human	ensembl	69_37n	-1	known	missense	c.421	p.E141Q	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_C/H,tigrfam_Cyclin_H	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_C/H,tigrfam_Cyclin_H	-	no_errors	CCNH	HGNC	ENSG00000134480	39	0	0	35	10	22.22	-	-	-	G	86703897	C	G	86703897	3	3	910	1	0	0	0	0	1	0	0	0	2954	835	29	2	574	2	CCNH	5	86703897	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	10734087	86703897	94211363	38	73482										
PCDHGB4	0	genome.wustl.edu	37	chr5	140767563	140767563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agcagatccgctacaggattCccgaggaaatgcccaagggc	12	12	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	140767563	140767563	C	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.112	p.P38T	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	14	0	0	14	12	46.15	-	-	-	A	140767563	C	A	140767563	3	1	910	1	0	0	0	0	1	0	0	0	11638	855	30	2	114	2	PCDHGB4	5	140767563	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	54063666	140767563	40147697	39	73483										
G3BP1	0	genome.wustl.edu	37	chr5	151179507	151179507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cacaaagacctcagcgggatCaaagagtgcgagaacaacga	11	10	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	151179507	151179507	C	G	SNP	G3BP1	ENST00000356245	human	ensembl	69_37n	1	known	missense	c.901	p.Q301E	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907	29	0	0	35	5	12.5	-	-	-	G	151179507	C	G	151179507	3	3	910	1	0	0	0	0	1	0	0	0	6190	827	29	2	931	2	G3BP1	5	151179507	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	10411944	151179507	29735753	40	73484										
F12	0	genome.wustl.edu	37	chr5	176829562	176829562	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agagctcacctggcacgcatCggtgccgccctcgaggaacc	12	16	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	176829562	176829562	C	A	SNP	F12	ENST00000253496	human	ensembl	69_37n	-1	known	missense	c.1669	p.D557Y	0.997	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1_S6,pfam_Kringle,pfam_FN_type2_col-bd,pfam_EGF-like_dom,pfam_Fibronectin_type1,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1_S6,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	F12	HGNC	ENSG00000131187	10	0	0	21	6	22.22	-	-	-	A	176829562	C	A	176829562	3	1	910	1	0	0	0	0	1	0	0	0	5376	884	31	3	186	3	F12	5	176829562	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	25650055	176829562	4085698	41	73485										
PRPF4B	0	genome.wustl.edu	37	chr6	4037783	4037783	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tagcaggtctccaagaagaaGaagcagatctcctcggagaa	11	9	2	5			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	4037783	4037783	G	A	SNP	PRPF4B	ENST00000337659	human	ensembl	69_37n	1	known	missense	c.1391	p.R464K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	27	0	0	21	9	30	-	-	-	A	4037783	G	A	4037783	3	1	910	1	0	0	0	0	1	0	0	0	12654	942	33	2	1401	2	PRPF4B	6	4037783	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		4037783	167077284	42	73486										
HIST1H2BK	0	genome.wustl.edu	37	chr6	27114571	27114571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gggagcggacttcgctggttCcggcatgttgaaggcgaact	16	9	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	27114571	27114571	C	T	SNP	HIST1H2BK	ENST00000356950	human	ensembl	69_37n	-1	known	missense	c.7	p.E3K	0.998	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BK	HGNC	ENSG00000197903	41	0	0	36	16	30.77	-	-	-	T	27114571	C	T	27114571	3	4	910	1	0	0	0	0	1	0	0	0	7201	864	30	2	377	2	HIST1H2BK	6	27114571	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	23076788	27114571	144000496	43	73487										
PRICKLE4	0	genome.wustl.edu	37	chr6	41753249	41753249	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gccgtcatcatgcagagttgCtgcgcccgcgctgcccggct	13	16	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	41753249	41753249	C	G	SNP	PRICKLE4	ENST00000335515	human	ensembl	69_37n	1	known	missense	c.553	p.L185V	0.837	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593	16	0	0	9	8	47.06	-	-	-	G	41753249	C	G	41753249	3	3	910	1	0	0	0	0	1	0	0	0	12570	796	28	4	567	4	PRICKLE4	6	41753249	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	14638678	41753249	129361818	44	73488										
TOMM6	0	genome.wustl.edu	37	chr6	41757047	41757047	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gagtgacattgacctcatggCacctcagccaggggtgtagc	13	11	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	41757047	41757047	C	A	SNP	TOMM6	ENST00000398881	human	ensembl	69_37n	1	novel	missense	c.206	p.A69E	1.000	NULL	NULL	-	no_errors	TOMM6	HGNC	ENSG00000214736	48	0	0	47	24	33.33	-	-	-	A	41757047	C	A	41757047	3	1	910	1	0	0	0	0	1	0	0	0	16456	710	25	4	212	4	TOMM6	6	41757047	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	3798	41757047	129358020	45	73489										
PPP2R5D	0	genome.wustl.edu	37	chr6	42976473	42976473	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tcctggagaaggagagcagtCtgactgagccggtaattccc	13	10	1	4			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	42976473	42976473	C	G	SNP	PPP2R5D	ENST00000485511	human	ensembl	69_37n	1	known	missense	c.1069	p.L357V	0.997	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5D	HGNC	ENSG00000112640	34	0	0	28	6	17.65	-	-	-	G	42976473	C	G	42976473	3	3	910	1	0	0	0	0	1	0	0	0	12472	912	32	2	1107	2	PPP2R5D	6	42976473	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1219426	42976473	128138594	46	73490										
HSP90AB1	0	genome.wustl.edu	37	chr6	44219554	44219554	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	acctcccagtctggagatgaGatgacatctctgtcagagta	10	10	3	4			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	44219554	44219554	G	A	SNP	HSP90AB1	ENST00000435812	human	ensembl	69_37n	1	known	missense	c.272	p.R91K	1.000	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HSP90AB1	HGNC	ENSG00000096384	51	0	0	31	36	53.73	-	-	-	A	44219554	G	A	44219554	3	1	910	1	0	0	0	0	1	0	0	0	7455	933	33	2	1425	2	HSP90AB1	6	44219554	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	1243081	44219554	126895513	47	73491										
MUT	0	genome.wustl.edu	37	chr6	49426879	49426879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gatggtccagggcctaaaggTatacatggtaggatatggtc	14	6	0	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	49426879	49426879	T	C	SNP	MUT	ENST00000274813	human	ensembl	69_37n	-1	known	missense	c.301	p.T101A	1.000	pfam_MeMalonylCoA_mutase_a/b_cat,superfamily_Cbl-dep_enz_cat,tigrfam_MMCoA_mutase_a_cat	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085	73	0	0	47	20	29.85	-	-	-	C	49426879	T	C	49426879	3	2	910	1	0	0	0	0	1	0	0	0	10063	1638	57	5	1999	5	MUT	6	49426879	Missense_Mutation	SNP	T	TCGA-EW-A1PB-01A-11D-A142-09	5207325	49426879	121688188	48	73492										
ICK	0	genome.wustl.edu	37	chr6	52876589	52876589	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ggcaagtatcgagagtgcttCaaatagtgctgcttggctgc	13	8	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	52876589	52876589	C	T	SNP	ICK	ENST00000350082	human	ensembl	69_37n	-1	known	silent	c.1470	p.L490	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ICK	HGNC	ENSG00000112144	27	0	0	33	9	21.43	-	-	-	T	52876589	C	T	52876589	2	4	910	1	0	0	0	0	0	0	0	1	7538	825	29	2		2	ICK	6	52876589	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	3449710	52876589	118238478	49	73493										
SMAP1	0	genome.wustl.edu	37	chr6	71546704	71546704	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ccagccctaaaaaagctgcgGagcccactgtggatctttta	9	12	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	71546704	71546704	G	C	SNP	SMAP1	ENST00000370455	human	ensembl	69_37n	1	known	missense	c.637	p.E213Q	1.000	NULL	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	45	0	0	37	23	38.33	-	-	-	C	71546704	G	C	71546704	3	2	910	1	0	0	0	0	1	0	0	0	14855	1175	41	2	663	2	SMAP1	6	71546704	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	18670115	71546704	99568363	50	73494										
ZNF292	0	genome.wustl.edu	37	chr6	87964520	87964520	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gttaaacgtgcttgtcaactGagtgaatttcttattgagcc	9	7	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	87964520	87964520	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	1	known	silent	c.1173	p.L391	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	62	0	0	64	30	31.91	-	-	-	A	87964520	G	A	87964520	2	1	910	1	0	0	0	0	0	0	0	1	17922	1277	45	2		2	ZNF292	6	87964520	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	16417816	87964520	83150547	51	73495										
CDC40	0	genome.wustl.edu	37	chr6	110531945	110531945	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttggatgaaatcacagcaaaGaggcagaaaaaaggaaaaca	10	5	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	110531945	110531945	G	C	SNP	CDC40	ENST00000307731	human	ensembl	69_37n	1	known	missense	c.666	p.K222N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	60	0	0	51	33	39.29	-	-	-	C	110531945	G	C	110531945	3	2	910	1	0	0	0	0	1	0	0	0	3099	933	33	2	688	2	CDC40	6	110531945	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	22567425	110531945	60583122	52	73496										
UTRN	0	genome.wustl.edu	37	chr6	144869832	144869832	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ctgcgtcagatattcctgttCagtctcatcgtacttcggaa	8	11	3	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	144869832	144869832	C	A	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.6652	p.Q2218K	0.047	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	39	0	0	40	11	21.57	-	-	-	A	144869832	C	A	144869832	3	1	910	1	0	0	0	0	1	0	0	0	17200	827	29	2	6834	2	UTRN	6	144869832	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	34337887	144869832	26245235	53	73497										
PDE10A	0	genome.wustl.edu	37	chr6	165827098	165827098	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tgttgaccatctgcaccacaCctatcacgctgcctcggctg	8	16	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	165827098	165827098	C	G	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.1169	p.G390A	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	54	0	0	45	15	25	-	-	-	G	165827098	C	G	165827098	3	3	910	1	0	0	0	0	1	0	0	0	11703	507	18	4	1240	4	PDE10A	6	165827098	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	20957266	165827098	5287969	54	73498										
PDE10A	0	genome.wustl.edu	37	chr6	165832134	165832134	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tagctgtaccttatctctttGgtcttcttgaagacaggttt	8	8	3	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	165832134	165832134	G	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	silent	c.987	p.T329	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	29	0	0	26	16	38.1	-	-	-	T	165832134	G	T	165832134	2	4	910	1	0	0	0	0	0	0	0	1	11703	1335	47	4		4	PDE10A	6	165832134	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	5036	165832134	5282933	55	73499										
PRKAR1B	0	genome.wustl.edu	37	chr7	720286	720286	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttcaccacagggttcgggggGgtgggcgacacctcctcatc	14	13	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	720286	720286	G	C	SNP	PRKAR1B	ENST00000360274	human	ensembl	69_37n	-1	known	silent	c.255	p.T85	0.006	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191	13	0	0	5	10	66.67	-	-	-	C	720286	G	C	720286	2	2	910	1	0	0	0	0	0	0	0	1	12585	1219	43	4		4	PRKAR1B	7	720286	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		720286	158418377	56	73500										
CACNA2D1	0	genome.wustl.edu	37	chr7	81714138	81714138	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	caaaaacctgccacaataatGaagggtcttcctcgcgattc	7	12	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	81714138	81714138	G	A	SNP	CACNA2D1	ENST00000356253	human	ensembl	69_37n	-1	known	missense	c.605	p.S202L	0.631	pfam_VWA_N	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	46	0	0	79	20	20	-	-	-	A	81714138	G	A	81714138	3	1	910	1	0	0	0	0	1	0	0	0	2573	1294	45	2	2802	2	CACNA2D1	7	81714138	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	80993852	81714138	77424525	57	73501										
ABCB4	0	genome.wustl.edu	37	chr7	87069137	87069137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gctgggcccctctctctccaAccagggtgtcaaatttctaa	8	14	4	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	87069137	87069137	A	C	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.1577	p.V526G	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	55	0	0	58	21	26.58	-	-	-	C	87069137	A	C	87069137	3	2	910	1	0	0	0	0	1	0	0	0	43	43	2	5	2343	5	ABCB4	7	87069137	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	5354999	87069137	72069526	58	73502										
SERPINE1	0	genome.wustl.edu	37	chr7	100773847	100773847	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atgccccacttcttcaggctGttccggagcacggtcaagca	10	14	3	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	100773847	100773847	G	T	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	1	known	silent	c.417	p.L139	0.965	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	34	0	0	29	4	12.12	-	-	-	T	100773847	G	T	100773847	2	4	910	1	0	0	0	0	0	0	0	1	14199	1364	48	4		4	SERPINE1	7	100773847	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	13704710	100773847	58364816	59	73503										
DOCK4	0	genome.wustl.edu	37	chr7	111395657	111395657	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cgttctctccacccagagacTctacaaaacacaaaacacat	3	15	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	111395657	111395657	T	A	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.4330	p.S1444C	1.000	pfam_DOCK	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	43	0	0	41	36	46.75	-	-	-	A	111395657	T	A	111395657	3	1	910	1	0	0	0	0	1	0	0	0	4724	1565	54	5	1645	5	DOCK4	7	111395657	Missense_Mutation	SNP	T	TCGA-EW-A1PB-01A-11D-A142-09	10621810	111395657	47743006	60	73504										
ZNF277	0	genome.wustl.edu	37	chr7	111846820	111846820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tcgcccgaatgcaggaagacCgtgatgggagctgcagcaca	14	11	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	111846820	111846820	C	T	SNP	ZNF277	ENST00000361822	human	ensembl	69_37n	1	known	missense	c.49	p.R17C	0.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839	38	0	0	38	12	24	-	-	-	T	111846820	C	T	111846820	3	4	910	1	0	0	0	0	1	0	0	0	17908	652	23	1	51	1	ZNF277	7	111846820	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	451163	111846820	47291843	61	73505										
CHRM2	0	genome.wustl.edu	37	chr7	136699784	136699784	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	accgccacctccagaccgtcAacaattactttttattcagc	4	15	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	136699784	136699784	A	T	SNP	CHRM2	ENST00000320658	human	ensembl	69_37n	1	known	missense	c.172	p.N58Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M2_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	95	0	0	101	31	23.48	-	-	-	T	136699784	A	T	136699784	3	4	910	1	0	0	0	0	1	0	0	0	3406	130	5	5	174	5	CHRM2	7	136699784	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	24852964	136699784	22438879	62	73506										
ADCK2	0	genome.wustl.edu	37	chr7	140389402	140389402	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cgttgcattttccagggccaGagagtggctgagctgatcct	13	10	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	140389402	140389402	G	C	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	1	known	missense	c.1563	p.Q521H	0.607	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	36	0	0	54	12	18.18	-	-	-	C	140389402	G	C	140389402	3	2	910	1	0	0	0	0	1	0	0	0	289	933	33	2	1585	2	ADCK2	7	140389402	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	3689618	140389402	18749261	63	73507										
FAM131B	0	genome.wustl.edu	37	chr7	143055977	143055977	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gtcggagtaggcatccgtatCcctgcgcacggactcatggc	13	13	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	143055977	143055977	C	G	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.409	p.D137H	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	27	0	0	63	10	13.7	-	-	-	G	143055977	C	G	143055977	3	3	910	1	0	0	0	0	1	0	0	0	5480	855	30	2	685	2	FAM131B	7	143055977	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2666575	143055977	16082686	64	73508										
BMP1	0	genome.wustl.edu	37	chr8	22052371	22052371	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agcacgtccagccgcctctgGctcaagttcgtctctgacgg	11	15	3	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	22052371	22052371	G	A	SNP	BMP1	ENST00000306385	human	ensembl	69_37n	1	known	nonsense	c.1578	p.W526*	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	22	0	0	27	12	30.77	-	-	-	A	22052371	G	A	22052371	4	1	910	1	0	0	0	0	0	1	0	0	1461	1212	42	4	1624	4	BMP1	8	22052371	Nonsense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		22052371	124311651	65	73509										
POLR3D	0	genome.wustl.edu	37	chr8	22107968	22107968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gagatgacagtcctgggacaCgtgaagcacaaacttgtatg	12	8	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	22107968	22107968	C	T	SNP	POLR3D	ENST00000397802	human	ensembl	69_37n	1	known	silent	c.1134	p.H378	0.918	pfam_RNA_pol_III_Rpc4	pfam_RNA_pol_III_Rpc4	-	no_errors	POLR3D	HGNC	ENSG00000168495	64	0	0	79	21	21	-	-	-	T	22107968	C	T	22107968	2	4	910	1	0	0	0	0	0	0	0	1	12305	535	19	1		1	POLR3D	8	22107968	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	55597	22107968	124256054	66	73510										
TMEM68	0	genome.wustl.edu	37	chr8	56668876	56668876	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tgtataaatattttagccatGaaatagtaaaaatctatagg	6	3	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	56668876	56668876	G	A	SNP	TMEM68	ENST00000520061	human	ensembl	69_37n	-1	known	missense	c.236	p.S79L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM68	HGNC	ENSG00000167904	30	0	0	40	11	21.57	-	-	-	A	56668876	G	A	56668876	3	1	910	1	0	0	0	0	1	0	0	0	16292	1281	45	2	365	2	TMEM68	8	56668876	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	34560908	56668876	89695146	67	73511										
MLLT10	0	genome.wustl.edu	37	chr10	21962594	21962594	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atataagcgggctcaaacttCtggcatagaagaagaaactg	10	7	2	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	21962594	21962594	C	G	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.1367	p.S456C	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	30	0	0	35	11	23.91	-	-	-	G	21962594	C	G	21962594	3	3	910	1	0	0	0	0	1	0	0	0	9697	913	32	2	1405	2	MLLT10	10	21962594	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		21962594	113572153	68	73512										
MYPN	0	genome.wustl.edu	37	chr10	69881600	69881600	+	Frame_Shift_Del	DEL	A	A	-													0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aaagaaagcccccaggaggcAaaaaggccacagtattgttc							TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	69881600	69881600	A	-	DEL	MYPN	ENST00000358913	human	ensembl	69_37n	1	known	frame_shift_del	c.405	p.R137fs	0.221	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	16	0	0	14	2	12.5	-	-	-	-	69881600	A	-	69881600	7	5	910	1	0	1	0	1	0	0	0	0	10170	117	5	0	407	0	MYPN	10	69881600	Frame_Shift_Del	DEL	A	TCGA-EW-A1PB-01A-11D-A142-09	47919006	69881600	65653147	69	73513										
PLAC9	0	genome.wustl.edu	37	chr10	81901933	81901933	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gccgtctagatgtcatggagGaggtaacagggtggtttgga	17	5	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	81901933	81901933	G	C	SNP	PLAC9	ENST00000372263	human	ensembl	69_37n	1	known	missense	c.160	p.E54Q	0.987	NULL	NULL	-	no_errors	PLAC9	HGNC	ENSG00000189129	36	0	0	27	15	35.71	-	-	-	C	81901933	G	C	81901933	3	2	910	1	0	0	0	0	1	0	0	0	12091	1175	41	2	166	2	PLAC9	10	81901933	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	12020333	81901933	53632814	70	73514										
MUC5B	0	genome.wustl.edu	37	chr11	1272209	1272209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	caccaacccctcctcaactcCagggacaacacccatcaccc	3	22	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	1272209	1272209	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.14108	p.P4703L	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	151	0	0	136	61	30.96	-	-	-	T	1272209	C	T	1272209	3	4	910	1	0	0	0	0	1	0	0	0	10051	594	21	4	14230	4	MUC5B	11	1272209	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		1272209	133734307	71	73515										
LDHC	0	genome.wustl.edu	37	chr11	18434280	18434280	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tccaaatgtcaactgtcaagGagcagctaattgagaagcta	9	8	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	18434280	18434280	G	C	SNP	LDHC	ENST00000280704	human	ensembl	69_37n	1	known	missense	c.16	p.E6Q	1.000	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHC	HGNC	ENSG00000166796	46	0	0	38	8	17.39	-	-	-	C	18434280	G	C	18434280	3	2	910	1	0	0	0	0	1	0	0	0	8756	1175	41	2	18	2	LDHC	11	18434280	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	17162071	18434280	116572236	72	73516										
SSRP1	0	genome.wustl.edu	37	chr11	57099625	57099625	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atcccaggcccacactctcaCccttggaagttgcctggcac	8	17	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	57099625	57099625	C	A	SNP	SSRP1	ENST00000278412	human	ensembl	69_37n	-1	known	splice_site	c.1001+1	e7+1	1.000	-	-	-	no_errors	SSRP1	HGNC	ENSG00000149136	29	0	0	37	12	24.49	-	-	-	A	57099625	C	A	57099625	5	1	910	1	0	0	0	0	0	0	1	0	15285	521	18	4	1167	4	SSRP1	11	57099625	Splice_Site	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	38665345	57099625	77906891	73	73517										
TMEM223	0	genome.wustl.edu	37	chr11	62558104	62558104	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aggtcatttcttcacaagctCcggtaggcacccacagtatt	8	12	3	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	62558104	62558104	C	G	SNP	TMEM223	ENST00000307366	human	ensembl	69_37n	-1	known	silent	c.600	p.R200	0.977	NULL	NULL	-	no_errors	TMEM223	HGNC	ENSG00000168569	28	0	0	31	10	24.39	-	-	-	G	62558104	C	G	62558104	2	3	910	1	0	0	0	0	0	0	0	1	16241	842	30	2		2	TMEM223	11	62558104	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	5458479	62558104	72448412	74	73518										
STIP1	0	genome.wustl.edu	37	chr11	63970680	63970680	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atgtgtaccagaaggcgctaGacctggactccagctgtaag	12	10	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	63970680	63970680	G	C	SNP	STIP1	ENST00000305218	human	ensembl	69_37n	1	known	missense	c.1366	p.D456H	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439	23	0	0	20	5	20	-	-	-	C	63970680	G	C	63970680	3	2	910	1	0	0	0	0	1	0	0	0	15376	942	33	2	1412	2	STIP1	11	63970680	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	1412576	63970680	71035836	75	73519										
SNX15	0	genome.wustl.edu	37	chr11	64803125	64803125	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cttgccctcttcgaccccttCtccaaggaaggtaatgagct	8	14	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	64803125	64803125	C	A	SNP	SNX15	ENST00000377244	human	ensembl	69_37n	1	known	missense	c.654	p.F218L	1.000	NULL	pfam_MIT,pfam_Phox,superfamily_Phox,smart_Phox,smart_MIT,pfscan_Phox	-	no_errors	SNX15	HGNC	ENSG00000110025	30	0	0	28	12	30	-	-	-	A	64803125	C	A	64803125	3	1	910	1	0	0	0	0	1	0	0	0	14975	912	32	2	676	2	SNX15	11	64803125	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	832445	64803125	70203391	76	73520										
CD248	0	genome.wustl.edu	37	chr11	66082230	66082230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ggggtctgcaccccatcacaCgctggttctgcaggtctgca	12	14	4	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	66082230	66082230	C	G	SNP	CD248	ENST00000311330	human	ensembl	69_37n	-1	known	missense	c.2269	p.V757L	0.996	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	10	0	0	22	6	21.43	-	-	-	G	66082230	C	G	66082230	3	3	910	1	0	0	0	0	1	0	0	0	3018	536	19	3	8	3	CD248	11	66082230	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1279105	66082230	68924286	77	73521										
KDM2A	0	genome.wustl.edu	37	chr11	66999259	66999259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tagccggggctcccacaatgGacaagtgtgggatccccagt	13	12	0	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	66999259	66999259	G	A	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	1	known	missense	c.1307	p.G436E	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	26	0	0	39	19	32.76	-	-	-	A	66999259	G	A	66999259	3	1	910	1	0	0	0	0	1	0	0	0	8178	1174	41	2	1349	2	KDM2A	11	66999259	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	917029	66999259	68007257	78	73522										
BIRC3	0	genome.wustl.edu	37	chr11	102206908	102206909	+	Frame_Shift_Del	DEL	CT	CT	-													0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcagccactgtattcagaaaCtctctgcaagaagctgaagc							TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	102206908	102206909	CT	-	DEL	BIRC3	ENST00000263464	human	ensembl	69_37n	1	known	frame_shift_del	c.1536_1537	p.L514fs	0.997:0.997	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445	33	0	0	29	5	14.71	-	-	-	-	102206909	CT	-	102206908	7	5	910	1	0	1	0	1	0	0	0	0	1441	564	20	0	1558	0	BIRC3	11	102206908	Frame_Shift_Del	DEL	CT	TCGA-EW-A1PB-01A-11D-A142-09	35207649	102206908	32799608	79	73523										
DDI1	0	genome.wustl.edu	37	chr11	103907921	103907921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcgcacacccgctgcccagcGgtcacagggcttggcgtcag	14	16	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	103907921	103907921	G	A	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	1	known	missense	c.371	p.R124Q	0.000	NULL	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	13	0	0	23	5	17.86	-	-	-	A	103907921	G	A	103907921	3	1	910	1	0	0	0	0	1	0	0	0	4359	1116	39	1	373	1	DDI1	11	103907921	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	1701013	103907921	31098595	80	73524										
HOXC6	0	genome.wustl.edu	37	chr12	54422706	54422709	+	Frame_Shift_Del	DEL	GTGA	GTGA	-													0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcgaatgaattcgcacagtgGtgagttttacagctccgaga							TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	54422706	54422709	GTGA	-	DEL	HOXC6	ENST00000504315	human	ensembl	69_37n	1	known	frame_shift_del	c.155	p.G52fs	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	HOXC6	HGNC	ENSG00000197757	18	0	0	14	10	40	-	-	-	-	54422709	GTGA	-	54422706	7	5	910	1	0	1	0	1	0	0	0	0	7366	1275	44	0	403	0	HOXC6	12	54422706	Frame_Shift_Del	DEL	GTGA	TCGA-EW-A1PB-01A-11D-A142-09		54422706	79429189	81	73525										
UTP20	0	genome.wustl.edu	37	chr12	101699730	101699730	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	catctgtgttgctgttgactGatctctattatcagagatta	8	7	3	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	101699730	101699730	G	A	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.1819	p.D607N	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	47	0	0	29	22	43.14	-	-	-	A	101699730	G	A	101699730	3	1	910	1	0	0	0	0	1	0	0	0	17196	1290	45	2	1881	2	UTP20	12	101699730	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	47277024	101699730	32152165	82	73526										
SPIC	0	genome.wustl.edu	37	chr12	101871392	101871392	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gaagatgcttttgaggttctGaggcaacattcaactggaga	12	6	2	4			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	101871392	101871392	G	C	SNP	SPIC	ENST00000299272	human	ensembl	69_37n	1	known	silent	c.60	p.L20	0.980	NULL	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPIC	HGNC	ENSG00000166211	49	0	0	42	18	30	-	-	-	C	101871392	G	C	101871392	2	2	910	1	0	0	0	0	0	0	0	1	15142	1291	45	2		2	SPIC	12	101871392	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	171662	101871392	31980503	83	73527										
NT5DC3	0	genome.wustl.edu	37	chr12	104200107	104200107	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ctcttactcttacctgtagaCagttcccagctggatataat	6	11	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	104200107	104200107	C	G	SNP	NT5DC3	ENST00000392876	human	ensembl	69_37n	-1	known	missense	c.517	p.V173L	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696	49	0	0	36	8	18.18	-	-	-	G	104200107	C	G	104200107	3	3	910	1	0	0	0	0	1	0	0	0	10765	478	17	4	1173	4	NT5DC3	12	104200107	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2328715	104200107	29651788	84	73528										
TCP11L2	0	genome.wustl.edu	37	chr12	106729428	106729428	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cactcttaggtgctcttgatCagactacagaatggataaaa	8	8	3	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	106729428	106729428	C	T	SNP	TCP11L2	ENST00000299045	human	ensembl	69_37n	1	known	nonsense	c.784	p.Q262*	0.634	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	30	0	0	16	12	42.86	-	-	-	T	106729428	C	T	106729428	4	4	910	1	0	0	0	0	0	1	0	0	15810	827	29	2	806	2	TCP11L2	12	106729428	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2529321	106729428	27122467	85	73529										
DNAH10	0	genome.wustl.edu	37	chr12	124281372	124281372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gatactggacagtgatcgagGacaggaggtatgttgctctt	14	6	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	124281372	124281372	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	missense	c.1802	p.G601V	0.994	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	37	0	0	42	16	27.59	-	-	-	T	124281372	G	T	124281372	3	4	910	1	0	0	0	0	1	0	0	0	4634	1174	41	2	1848	2	DNAH10	12	124281372	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	17551944	124281372	9570523	86	73530										
NALCN	0	genome.wustl.edu	37	chr13	101777015	101777015	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aggttccttgccctgatgctGaaaacagacttgcgaagctg	11	10	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	13	101777015	101777015	G	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.2136	p.F712	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	51	0	0	96	28	22.58	-	-	-	A	101777015	G	A	101777015	2	1	910	1	0	0	0	0	0	0	0	1	10220	1281	45	2		2	NALCN	13	101777015	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		101777015	13392863	87	73531										
TPP2	0	genome.wustl.edu	37	chr13	103281891	103281891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	taatataatttatgtttcaaGtgctggaaataatggtccat	7	4	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	13	103281891	103281891	G	A	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.1076	p.S359N	1.000	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	59	0	0	129	23	15.13	-	-	-	A	103281891	G	A	103281891	3	1	910	1	0	0	0	0	1	0	0	0	16508	1029	36	4	1110	4	TPP2	13	103281891	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	1504876	103281891	11887987	88	73532										
RIN3	0	genome.wustl.edu	37	chr14	93118024	93118024	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ttccccctagtctccagcctCaggcccacagcccatgacgc	7	20	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	14	93118024	93118024	C	G	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	silent	c.630	p.L210	0.340	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	24	0	0	24	9	27.27	-	-	-	G	93118024	C	G	93118024	2	3	910	1	0	0	0	0	0	0	0	1	13459	813	29	2		2	RIN3	14	93118024	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		93118024	14231516	89	73533										
OIP5	0	genome.wustl.edu	37	chr15	41624735	41624735	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cggcgttgcacaacgtgagcGatgccgcagcggctgagccg	16	13	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	41624735	41624735	G	C	SNP	OIP5	ENST00000220514	human	ensembl	69_37n	-1	known	missense	c.25	p.R9G	0.000	NULL	NULL	-	no_errors	OIP5	HGNC	ENSG00000104147	15	0	0	26	10	27.78	-	-	-	C	41624735	G	C	41624735	3	2	910	1	0	0	0	0	1	0	0	0	10921	1058	37	3	684	3	OIP5	15	41624735	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		41624735	60906657	90	73534										
WDR72	0	genome.wustl.edu	37	chr15	53908000	53908000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tccactccccatggcaaaagGcaagacagaaacaattttgc	7	12	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	53908000	53908000	G	A	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	silent	c.2403	p.C801	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	54	0	0	47	36	43.37	-	-	-	A	53908000	G	A	53908000	2	1	910	1	0	0	0	0	0	0	0	1	17419	1195	42	4		4	WDR72	15	53908000	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	12283265	53908000	48623392	91	73535										
ULK3	0	genome.wustl.edu	37	chr15	75131064	75131064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cgatggccttgagctcctcaGcccgggacacgtactgcccc	11	17	1	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	75131064	75131064	G	A	SNP	ULK3	ENST00000440863	human	ensembl	69_37n	-1	known	missense	c.1022	p.A341V	1.000	pfam_MIT,smart_MIT	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIT,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_MIT,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK3	HGNC	ENSG00000140474	15	0	0	18	15	45.45	-	-	-	A	75131064	G	A	75131064	3	1	910	1	0	0	0	0	1	0	0	0	17074	971	34	4	424	4	ULK3	15	75131064	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	21223064	75131064	27400328	92	73536										
HOMER2	0	genome.wustl.edu	37	chr15	83523419	83523419	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gttgcggagccggtcattctCatcacggcagatggagaact	13	10	3	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	83523419	83523419	C	T	SNP	HOMER2	ENST00000304231	human	ensembl	69_37n	-1	known	missense	c.661	p.E221K	0.998	NULL	pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942	24	0	0	15	7	31.82	-	-	-	T	83523419	C	T	83523419	3	4	910	1	0	0	0	0	1	0	0	0	7330	835	29	2	419	2	HOMER2	15	83523419	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	8392355	83523419	19007973	93	73537										
VPS33B	0	genome.wustl.edu	37	chr15	91561082	91561082	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atccaaagggctcatgagatCtgcctcaatgaataaatcct	7	10	3	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	91561082	91561082	C	G	SNP	VPS33B	ENST00000333371	human	ensembl	69_37n	-1	known	missense	c.130	p.D44H	0.999	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056	36	0	0	41	9	18	-	-	-	G	91561082	C	G	91561082	3	3	910	1	0	0	0	0	1	0	0	0	17299	913	32	2	1811	2	VPS33B	15	91561082	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	8037663	91561082	10970310	94	73538										
SALL1	0	genome.wustl.edu	37	chr16	51175790	51175790	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cctgtcaagtccgttgtgttCtgaaaggtcgctgcagtcca	11	11	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	51175790	51175790	C	G	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.343	p.E115Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	91	0	0	59	32	35.16	-	-	-	G	51175790	C	G	51175790	3	3	910	1	0	0	0	0	1	0	0	0	13896	922	32	2	3639	2	SALL1	16	51175790	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		51175790	39178963	95	73539										
KCTD19	0	genome.wustl.edu	37	chr16	67325347	67325347	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atctcttcccaggacagagaGaaactcaggaaagtcacttc	8	11	3	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	67325347	67325347	G	C	SNP	KCTD19	ENST00000304372	human	ensembl	69_37n	-1	known	missense	c.2430	p.F810L	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676	31	0	0	26	18	40.91	-	-	-	C	67325347	G	C	67325347	3	2	910	1	0	0	0	0	1	0	0	0	8160	933	33	2	362	2	KCTD19	16	67325347	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	16149557	67325347	23029406	96	73540										
PRMT7	0	genome.wustl.edu	37	chr16	68382280	68382280	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cacttggaagataaaattaaCatcatagagaaacggccgga	9	7	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	68382280	68382280	C	G	SNP	PRMT7	ENST00000339507	human	ensembl	69_37n	1	known	missense	c.1359	p.N453K	0.023	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	48	0	0	16	9	36	-	-	-	G	68382280	C	G	68382280	3	3	910	1	0	0	0	0	1	0	0	0	12622	477	17	4	1405	4	PRMT7	16	68382280	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1056933	68382280	21972473	97	73541										
GLP2R	0	genome.wustl.edu	37	chr17	9764490	9764490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tttgttgtaccctggggtttCgcccgtgcacacctggagaa	12	11	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	9764490	9764490	C	T	SNP	GLP2R	ENST00000458005	human	ensembl	69_37n	1	putative	missense	c.518	p.S173L	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GLP2R	HGNC	ENSG00000065325	63	0	0	58	15	20.55	-	-	-	T	9764490	C	T	9764490	3	4	910	1	0	0	0	0	1	0	0	0	6505	883	31	1	990	1	GLP2R	17	9764490	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		9764490	71430720	98	73542										
CDRT1	0	genome.wustl.edu	37	chr17	15522583	15522583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gttatagatgaaatcctttcCctgtgtggtctgaaggatat	10	6	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	15522583	15522583	C	T	SNP	CDRT1	ENST00000395906	human	ensembl	69_37n	-1	known	missense	c.244	p.G82R	0.916	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322	93	0	0	52	28	35	-	-	-	T	15522583	C	T	15522583	3	4	910	1	0	0	0	0	1	0	0	0	3203	632	22	4	2062	4	CDRT1	17	15522583	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	5758093	15522583	65672627	99	73543										
DNAI2	0	genome.wustl.edu	37	chr17	72308231	72308231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aagggtaaggcggagggcagGgatgaggagcagaccgatga	20	5	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	72308231	72308231	G	A	SNP	DNAI2	ENST00000311014	human	ensembl	69_37n	1	known	silent	c.1584	p.R528	0.372	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595	26	0	0	27	10	27.03	-	-	-	A	72308231	G	A	72308231	2	1	910	1	0	0	0	0	0	0	0	1	4645	1223	43	4		4	DNAI2	17	72308231	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	56785648	72308231	8886979	100	73544										
FAM100B	0	genome.wustl.edu	37	chr17	74262032	74262034	+	In_Frame_Del	DEL	CCA	CCA	-													0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gaaaccaacattcccaacagCcaccaccaccaccagatggt							TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	74262032	74262034	CCA	-	DEL	FAM100B	ENST00000327490	human	ensembl	69_37n	1	known	in_frame_del	c.165_167	p.H59in_frame_del	0.998:1.000:1.000	NULL	superfamily_UBA-like	-	no_errors	FAM100B	HGNC	ENSG00000185262	26	0	0	7	2	22.22	-	-	-	-	74262034	CCA	-	74262032	7	5	910	1	0	1	0	1	0	0	0	0	5419	738	26	0	171	0	FAM100B	17	74262032	In_Frame_Del	DEL	CCA	TCGA-EW-A1PB-01A-11D-A142-09	1953801	74262032	6933178	101	73545										
TNRC6C	0	genome.wustl.edu	37	chr17	76047128	76047128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gggggagactttaaaacctgGcccccaacagaactgggcta	12	11	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	76047128	76047128	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	1	known	missense	c.1985	p.G662D	0.998	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	39	0	0	24	15	38.46	-	-	-	A	76047128	G	A	76047128	3	1	910	1	0	0	0	0	1	0	0	0	16437	1203	42	4	1987	4	TNRC6C	17	76047128	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	1785096	76047128	5148082	102	73546										
ANKRD12	0	genome.wustl.edu	37	chr18	9257247	9257247	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aacaattccaaacaatatcaGaagagagcaatcaaggtagc	7	8	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	9257247	9257247	G	T	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	nonsense	c.3982	p.E1328*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	35	0	0	43	11	20.37	-	-	-	T	9257247	G	T	9257247	4	4	910	1	0	0	0	0	0	1	0	0	640	943	33	2	4012	2	ANKRD12	18	9257247	Nonsense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		9257247	68820001	103	73547										
RBBP8	0	genome.wustl.edu	37	chr18	20581659	20581659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cccaagcagcagatgaagagGaggaattgtctactgccaca	11	10	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	20581659	20581659	G	C	SNP	RBBP8	ENST00000327155	human	ensembl	69_37n	1	known	missense	c.2254	p.E752Q	0.057	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	53	0	0	61	16	20.78	-	-	-	C	20581659	G	C	20581659	3	2	910	1	0	0	0	0	1	0	0	0	13188	1175	41	2	2308	2	RBBP8	18	20581659	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	11324412	20581659	57495589	104	73548										
ASXL3	0	genome.wustl.edu	37	chr18	31325407	31325407	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tgtgtcatcagttccggcatCagtcagctaggacacagcca	10	12	4	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	31325407	31325407	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	silent	c.5595	p.I1865	0.417	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	24	0	0	34	6	15	-	-	-	T	31325407	C	T	31325407	2	4	910	1	0	0	0	0	0	0	0	1	1072	816	29	2		2	ASXL3	18	31325407	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	10743748	31325407	46751841	105	73549										
ACAA2	0	genome.wustl.edu	37	chr18	47311649	47311649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agcaatggctcctccattcaCattggttttacttatgtcaa	6	10	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	47311649	47311649	C	T	SNP	ACAA2	ENST00000285093	human	ensembl	69_37n	-1	known	missense	c.1027	p.V343M	1.000	pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315	45	0	0	56	23	29.11	-	-	-	T	47311649	C	T	47311649	3	4	910	1	0	0	0	0	1	0	0	0	105	478	17	4	174	4	ACAA2	18	47311649	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	15986242	47311649	30765599	106	73550										
CREB3L3	0	genome.wustl.edu	37	chr19	4157065	4157065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tggagactcactgcccagctCcccactctggtcccccgaag	9	18	2	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	4157065	4157065	C	T	SNP	CREB3L3	ENST00000078445	human	ensembl	69_37n	1	known	missense	c.230	p.S77F	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566	35	0	0	21	10	32.26	-	-	-	T	4157065	C	T	4157065	3	4	910	1	0	0	0	0	1	0	0	0	3888	855	30	2	240	2	CREB3L3	19	4157065	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		4157065	54971918	107	73551										
PEX11G	0	genome.wustl.edu	37	chr19	7547069	7547069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cagccaggttccctaggacgGagacacagcggacaaaggcg	14	12	0	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	7547069	7547069	G	T	SNP	PEX11G	ENST00000221480	human	ensembl	69_37n	-1	known	missense	c.278	p.S93Y	0.995	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11G	HGNC	ENSG00000104883	15	0	0	11	7	38.89	-	-	-	T	7547069	G	T	7547069	3	4	910	1	0	0	0	0	1	0	0	0	11813	1174	41	2	459	2	PEX11G	19	7547069	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	3390004	7547069	51581914	108	73552										
ILF3	0	genome.wustl.edu	37	chr19	10795141	10795141	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	catgattttgggtcttcctaGagcgtctaaaagtattgcac	9	8	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	10795141	10795141	G	C	SNP	ILF3	ENST00000407004	human	ensembl	69_37n	1	known	nonstop	c.2121	p.*707Y	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	62	0	0	90	37	29.13	-	-	-	C	10795141	G	C	10795141	4	2	910	1	0	0	0	0	0	0	0	0	7766	937	33	2	2187	2	ILF3	19	10795141	Nonstop_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	3248072	10795141	48333842	109	73553										
CCDC130	0	genome.wustl.edu	37	chr19	13870017	13870017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gcgctgcccacactgagccaCatccaggaggcccagagcgc	12	17	0	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	13870017	13870017	C	T	SNP	CCDC130	ENST00000588809	human	ensembl	69_37n	1	putative	missense	c.419	p.T140I	1.000	NULL	pfam_CWC16	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC130	HGNC	ENSG00000104957	8	0	0	11	7	38.89	-	-	-	T	13870017	C	T	13870017	3	4	910	1	0	0	0	0	1	0	0	0	2791	477	17	4	530	4	CCDC130	19	13870017	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	3074876	13870017	45258966	110	73554										
EPHX3	0	genome.wustl.edu	37	chr19	15342092	15342092	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gatgtccaccagcagcaggtCgattgtgtagcagtccacat	11	11	0	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	15342092	15342092	C	G	SNP	EPHX3	ENST00000221730	human	ensembl	69_37n	-1	known	missense	c.445	p.D149H	0.156	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131	35	0	0	36	7	16.28	-	-	-	G	15342092	C	G	15342092	3	3	910	1	0	0	0	0	1	0	0	0	5218	884	31	3	657	3	EPHX3	19	15342092	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	1472075	15342092	43786891	111	73555										
BRD4	0	genome.wustl.edu	37	chr19	15350784	15350784	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gtcaggctctggaactgtgaCatctggggggaatgtatcat	14	7	4	1			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	15350784	15350784	C	G	SNP	BRD4	ENST00000263377	human	ensembl	69_37n	-1	known	missense	c.3219	p.M1073I	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867	38	0	0	30	12	28.57	-	-	-	G	15350784	C	G	15350784	3	3	910	1	0	0	0	0	1	0	0	0	1512	478	17	4	893	4	BRD4	19	15350784	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	8692	15350784	43778199	112	73556										
GPATCH1	0	genome.wustl.edu	37	chr19	33602732	33602732	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gctgtacgcatcttcccattCgaccttgtcctccaggttca	7	15	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	33602732	33602732	C	A	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	nonsense	c.1688	p.S563*	0.964	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	32	0	0	39	14	25.93	-	-	-	A	33602732	C	A	33602732	4	1	910	1	0	0	0	0	0	1	0	0	6640	893	31	3	1734	3	GPATCH1	19	33602732	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	18251948	33602732	25526251	113	73557										
IL28B	0	genome.wustl.edu	37	chr19	39734335	39734335	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gtgaggaggcggaagaggttGaaggtgacagaggcctcgag	20	5	0	5			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	39734335	39734335	G	A	SNP	IL28B	ENST00000413851	human	ensembl	69_37n	-1	known	silent	c.528	p.F176	0.997	NULL	NULL	-	no_errors	IL28B	HGNC	ENSG00000197110	58	0	0	51	19	27.14	-	-	-	A	39734335	G	A	39734335	2	1	910	1	0	0	0	0	0	0	0	1	7737	1281	45	2		2	IL28B	19	39734335	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	6131603	39734335	19394648	114	73558										
CLPTM1	0	genome.wustl.edu	37	chr19	45494525	45494525	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cggtacctgtcctggatcctCttcccgctcctgggctgcta	10	16	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	45494525	45494525	C	G	SNP	CLPTM1	ENST00000337392	human	ensembl	69_37n	1	known	silent	c.1449	p.L483	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853	42	0	0	48	27	36	-	-	-	G	45494525	C	G	45494525	2	3	910	1	0	0	0	0	0	0	0	1	3584	900	32	2		2	CLPTM1	19	45494525	Silent	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	5760190	45494525	13634458	115	73559										
NAPA	0	genome.wustl.edu	37	chr19	47996232	47996232	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ccccacctgttcgtagatgtCaatggccttctgatactgct	8	13	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	47996232	47996232	C	G	SNP	NAPA	ENST00000263354	human	ensembl	69_37n	-1	known	missense	c.547	p.D183H	1.000	prints_NSF_attach	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402	40	0	0	29	17	36.17	-	-	-	G	47996232	C	G	47996232	3	3	910	1	0	0	0	0	1	0	0	0	10233	826	29	2	360	2	NAPA	19	47996232	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2501707	47996232	11132751	116	73560										
LIG1	0	genome.wustl.edu	37	chr19	48653045	48653045	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agcagctccctcctttcctgGagcccctggctcctcttcct	7	19	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	48653045	48653045	G	C	SNP	LIG1	ENST00000263274	human	ensembl	69_37n	-1	known	missense	c.751	p.P251A	0.000	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold-like,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486	38	0	0	33	24	42.11	-	-	-	C	48653045	G	C	48653045	3	2	910	1	0	0	0	0	1	0	0	0	8836	1174	41	2	2088	2	LIG1	19	48653045	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	656813	48653045	10475938	117	73561										
FAM83E	0	genome.wustl.edu	37	chr19	49107072	49107072	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gggagcgggcaggaggccgcGtacagcgtccggaactcaag	18	11	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	49107072	49107072	G	A	SNP	FAM83E	ENST00000263266	human	ensembl	69_37n	-1	known	silent	c.855	p.Y285	0.990	pfam_DUF1669	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523	8	0	0	5	4	44.44	-	-	-	A	49107072	G	A	49107072	2	1	910	1	0	0	0	0	0	0	0	1	5682	1140	40	1		1	FAM83E	19	49107072	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	454027	49107072	10021911	118	73562										
LILRA4	0	genome.wustl.edu	37	chr19	54848304	54848304	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ggctgccccctccttggtcaGaaggaaagtgaacatcgggt	13	11	1	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	54848304	54848304	G	A	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	silent	c.1063	p.L355	0.154	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	63	0	0	51	22	30.14	-	-	-	A	54848304	G	A	54848304	2	1	910	1	0	0	0	0	0	0	0	1	8842	933	33	2		2	LILRA4	19	54848304	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	5741232	54848304	4280679	119	73563										
NLRP4	0	genome.wustl.edu	37	chr19	56370171	56370171	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tttgctcaagagccaccttgAtcatcctcacccagctgtga	7	14	3	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	56370171	56370171	A	T	SNP	NLRP4	ENST00000301295	human	ensembl	69_37n	1	known	missense	c.1412	p.D471V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	60	0	0	48	23	32.39	-	-	-	T	56370171	A	T	56370171	3	4	910	1	0	0	0	0	1	0	0	0	10551	333	12	5	1418	5	NLRP4	19	56370171	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	1521867	56370171	2758812	120	73564										
ZNF587	0	genome.wustl.edu	37	chr19	58370285	58370285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	agctcagggtgtcacaggagCcatttgtcttccgcgagttt	12	10	3	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	58370285	58370285	C	T	SNP	ZNF587	ENST00000339656	human	ensembl	69_37n	1	known	missense	c.505	p.P169S	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466	26	0	0	11	3	21.43	-	-	-	T	58370285	C	T	58370285	3	4	910	1	0	0	0	0	1	0	0	0	18116	739	26	4	515	4	ZNF587	19	58370285	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2000114	58370285	758698	121	73565										
MYH7B	0	genome.wustl.edu	37	chr20	33568430	33568430	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	caacccctacaaatggctccCagtctatacggcctccgtag	7	16	1	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	33568430	33568430	C	A	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	1	novel	missense	c.518	p.P173Q	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	53	0	0	60	9	13.04	-	-	-	A	33568430	C	A	33568430	3	1	910	1	0	0	0	0	1	0	0	0	10112	594	21	4	540	4	MYH7B	20	33568430	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09		33568430	29457090	122	73566										
DNTTIP1	0	genome.wustl.edu	37	chr20	44429777	44429777	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gacccatgagcttccaggaaTaaaggtcagagtcactgtgt	11	9	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	44429777	44429777	T	A	SNP	DNTTIP1	ENST00000372622	human	ensembl	69_37n	1	known	missense	c.437	p.I146K	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	43	0	0	62	16	20.51	-	-	-	A	44429777	T	A	44429777	3	1	910	1	0	0	0	0	1	0	0	0	4716	1406	49	5	455	5	DNTTIP1	20	44429777	Missense_Mutation	SNP	T	TCGA-EW-A1PB-01A-11D-A142-09	10861347	44429777	18595743	123	73567										
PREX1	0	genome.wustl.edu	37	chr20	47309237	47309237	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	atcttccacattctccacctCcatgacttcagtgttgattc	4	14	3	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	47309237	47309237	C	A	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	nonsense	c.1009	p.E337*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	68	0	0	52	30	36.59	-	-	-	A	47309237	C	A	47309237	4	1	910	1	0	0	0	0	0	1	0	0	12557	864	30	2	4102	2	PREX1	20	47309237	Nonsense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	2879460	47309237	15716283	124	73568										
DIDO1	0	genome.wustl.edu	37	chr20	61522371	61522371	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cctgggcgctcagcgggatcAggtagaggtccttgacgtgc	16	11	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	61522371	61522371	A	C	SNP	DIDO1	ENST00000266070	human	ensembl	69_37n	-1	known	missense	c.3482	p.L1161R	1.000	pfam_SPOC_C	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	49	0	0	54	22	28.95	-	-	-	C	61522371	A	C	61522371	3	2	910	1	0	0	0	0	1	0	0	0	4558	188	7	5	3277	5	DIDO1	20	61522371	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	14213134	61522371	1503149	125	73569										
CHRNA4	0	genome.wustl.edu	37	chr20	61982113	61982113	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	cgtacttcctggtgttgtagGtgcccacggcatccacgatg	12	12	0	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	61982113	61982113	G	C	SNP	CHRNA4	ENST00000370263	human	ensembl	69_37n	-1	known	missense	c.650	p.T217S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	60	0	0	70	22	23.91	-	-	-	C	61982113	G	C	61982113	3	2	910	1	0	0	0	0	1	0	0	0	3414	1261	44	4	1241	4	CHRNA4	20	61982113	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	459742	61982113	1043407	126	73570										
PRPF6	0	genome.wustl.edu	37	chr20	62616368	62616368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	aaaggatggatgaaagaagaAaagaaagacggtaaaagaaa	12	1	0	6			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	62616368	62616368	A	C	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.349	p.K117Q	1.000	pfam_PRP1_N	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	32	0	0	58	15	20.55	-	-	-	C	62616368	A	C	62616368	3	2	910	1	0	0	0	0	1	0	0	0	12655	15	1	5	359	5	PRPF6	20	62616368	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	634255	62616368	409152	127	73571										
MYT1	0	genome.wustl.edu	37	chr20	62868702	62868702	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	tccgagacctgaacgagtccAactcggagatggaggctgcc	13	12	0	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	62868702	62868702	A	T	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.3133	p.N1045Y	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	35	0	0	20	14	41.18	-	-	-	T	62868702	A	T	62868702	3	4	910	1	0	0	0	0	1	0	0	0	10178	130	5	5	3126	5	MYT1	20	62868702	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	252334	62868702	156818	128	73572										
RNF128	0	genome.wustl.edu	37	chrX	105937522	105937522	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ctggattgcgctgatagaaaGaggtaattgtacattttcag	11	5	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	105937522	105937522	G	A	SNP	RNF128	ENST00000324342	human	ensembl	69_37n	1	known	missense	c.290	p.R97K	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	34	0	0	28	9	24.32	-	-	-	A	105937522	G	A	105937522	3	1	910	1	0	0	0	0	1	0	0	0	13522	942	33	2	292	2	RNF128	23	105937522	Missense_Mutation	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09		105937522	49333038	129	73573										
XPNPEP2	0	genome.wustl.edu	37	chrX	128889307	128889307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ccggacccagttttgaaaccAtctctgctagtggtctgaat	9	11	2	2			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	128889307	128889307	A	C	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	missense	c.1255	p.I419L	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	41	0	0	45	30	40	-	-	-	C	128889307	A	C	128889307	3	2	910	1	0	0	0	0	1	0	0	0	17540	217	8	5	1305	5	XPNPEP2	23	128889307	Missense_Mutation	SNP	A	TCGA-EW-A1PB-01A-11D-A142-09	22951785	128889307	26381253	130	73574										
BCORL1	0	genome.wustl.edu	37	chrX	129149215	129149215	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	ggtgttcagtcaatgggaaaCctaccagcacccaggtcctg	11	12	2	0			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	129149215	129149215	C	G	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.2467	p.P823A	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	16	0	0	8	9	52.94	-	-	-	G	129149215	C	G	129149215	3	3	910	1	0	0	0	0	1	0	0	0	1391	507	18	4	2477	4	BCORL1	23	129149215	Missense_Mutation	SNP	C	TCGA-EW-A1PB-01A-11D-A142-09	259908	129149215	26121345	131	73575										
USP26	0	genome.wustl.edu	37	chrX	132160197	132160197	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.371212121212121	49	4.11269417683461e-14	3.3252895507191	3.54453941120608	3.0719341563786	0.246072967083945	0.871954209449631	34	gtttgaaagtcaacttttgaGagaggtgtgcctgggctgct	14	6	1	3			TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	132160197	132160197	G	T	SNP	USP26	ENST00000370832	human	ensembl	69_37n	-1	known	silent	c.2052	p.L684	0.002	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP26	HGNC	ENSG00000134588	40	0	0	31	15	32.61	-	-	-	T	132160197	G	T	132160197	2	4	910	1	0	0	0	0	0	0	0	1	17154	929	33	2		2	USP26	23	132160197	Silent	SNP	G	TCGA-EW-A1PB-01A-11D-A142-09	3010982	132160197	23110363	132	73576										
ATAD3A	0	genome.wustl.edu	37	chr1	1447922	1447922	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ggggaagcgggagccctggcCcttgccgctcctcgccgctg	16	16	0	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	1447922	1447922	C	G	SNP	ATAD3A	ENST00000339113	human	ensembl	69_37n	1	known	missense	c.13	p.P5A	0.003	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATAD3A	HGNC	ENSG00000197785	10	0	0	7	4	36.36	-	-	-	G	1447922	C	G	1447922	3	3	911	1	0	0	0	0	1	0	0	0	1077	638	22	4		4	ATAD3A	1	1447922	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09		1447922	247802699	1	73577										
PHC2	0	genome.wustl.edu	37	chr1	33837947	33837947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctgaggtgctgctgctggagCgccgcggtctgcagcatgag	17	11	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	33837947	33837947	C	T	SNP	PHC2	ENST00000419414	human	ensembl	69_37n	-1	known	silent	c.276	p.A92	0.134	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686	49	0	0	44	13	22.81	-	-	-	T	33837947	C	T	33837947	2	4	911	1	0	0	0	0	0	0	0	1	11891	755	27	1		1	PHC2	1	33837947	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	32390025	33837947	215412674	2	73578										
ZYG11B	0	genome.wustl.edu	37	chr1	53255692	53255692	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tagttacagaagaattgcctCctttcactttgcagtgaccg	8	10	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	53255692	53255692	C	T	SNP	ZYG11B	ENST00000294353	human	ensembl	69_37n	1	known	silent	c.1287	p.L429	0.973	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378	21	0	0	25	6	19.35	-	-	-	T	53255692	C	T	53255692	2	4	911	1	0	0	0	0	0	0	0	1	18344	842	30	2		2	ZYG11B	1	53255692	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	19417745	53255692	195994929	3	73579										
LY9	0	genome.wustl.edu	37	chr1	160769718	160769718	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaaaatgtaaccattatggtCaaaagctacctgggccgact	9	9	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	160769718	160769718	C	G	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	silent	c.300	p.V100	0.003	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	38	0	0	52	10	16.13	-	-	-	G	160769718	C	G	160769718	2	3	911	1	0	0	0	0	0	0	0	1	9168	813	29	2		2	LY9	1	160769718	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	107514026	160769718	88480903	4	73580										
ILDR2	0	genome.wustl.edu	37	chr1	166904565	166904565	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcttcctccagtggagtcacTtggtgccaagggaggtggat	15	9	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	166904565	166904565	T	G	SNP	ILDR2	ENST00000271417	human	ensembl	69_37n	-1	known	missense	c.853	p.S285R	1.000	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195	35	0	0	34	8	18.6	-	-	-	G	166904565	T	G	166904565	3	3	911	1	0	0	0	0	1	0	0	0	7764	1609	56	5	1086	5	ILDR2	1	166904565	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	6134847	166904565	82346056	5	73581										
FMO3	0	genome.wustl.edu	37	chr1	171086310	171086310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aactctcctccttcattgggGcaaagcccaacatcccatgg	7	15	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	171086310	171086310	G	T	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	missense	c.1327	p.A443S	0.110	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	39	0	0	52	9	14.75	-	-	-	T	171086310	G	T	171086310	3	4	911	1	0	0	0	0	1	0	0	0	6002	1203	42	4	1357	4	FMO3	1	171086310	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	4181745	171086310	78164311	6	73582										
USH2A	0	genome.wustl.edu	37	chr1	215914804	215914804	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aagctgaccccagtgccttaAgaacaggagaattaagatcc	9	10	0	4			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	215914804	215914804	A	C	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11624	p.L3875R	0.056	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	44	0	0	48	6	11.11	-	-	-	C	215914804	A	C	215914804	3	2	911	1	0	0	0	0	1	0	0	0	17133	72	3	5	4036	5	USH2A	1	215914804	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	44828494	215914804	33335817	7	73583										
CDC42BPA	0	genome.wustl.edu	37	chr1	227221077	227221077	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttccgacttgcatggataacAtcagaagccaagactgaact	8	10	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	227221077	227221077	A	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	missense	c.3411	p.D1137E	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	33	0	0	14	43	75.44	-	-	-	T	227221077	A	T	227221077	3	4	911	1	0	0	0	0	1	0	0	0	3101	214	8	5	1792	5	CDC42BPA	1	227221077	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	11306273	227221077	22029544	8	73584										
RYR2	0	genome.wustl.edu	37	chr1	237995857	237995857	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccttgacttttgcaggaatcTtatgtctggaagatgtatca	9	7	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	237995857	237995857	T	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.14832	p.S4944	0.976	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	73	0	0	62	8	11.43	-	-	-	G	237995857	T	G	237995857	2	3	911	1	0	0	0	0	0	0	0	1	13855	1596	56	5		5	RYR2	1	237995857	Silent	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	10774780	237995857	11254764	9	73585										
KIF26B	0	genome.wustl.edu	37	chr1	245849196	245849196	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ggttaagccaagcagcggggGcaagcccactctctgagtct	13	12	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	1	245849196	245849196	G	C	SNP	KIF26B	ENST00000407071	human	ensembl	69_37n	1	known	missense	c.2911	p.A971P	0.207	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849	38	0	0	51	9	15	-	-	-	C	245849196	G	C	245849196	3	2	911	1	0	0	0	0	1	0	0	0	8347	1203	42	4	2957	4	KIF26B	1	245849196	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	7853339	245849196	3401425	10	73586										
MEIS1	0	genome.wustl.edu	37	chr2	66667033	66667033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aatgtgaattagctacttgtAccccccgcgagccgggggtg	13	11	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	66667033	66667033	A	C	SNP	MEIS1	ENST00000407092	human	ensembl	69_37n	1	known	missense	c.298	p.T100P	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS1	HGNC	ENSG00000143995	41	0	0	15	18	51.43	-	-	-	C	66667033	A	C	66667033	3	2	911	1	0	0	0	0	1	0	0	0	9538	391	14	5	308	5	MEIS1	2	66667033	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09		66667033	176532340	11	73587										
ATP6V1B1	0	genome.wustl.edu	37	chr2	71189937	71189937	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atcatcaccccgcgcctggcGctgaccactgctgaattcct	8	17	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	71189937	71189937	G	T	SNP	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	1	known	silent	c.816	p.A272	0.868	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	31	0	0	29	10	25.64	-	-	-	T	71189937	G	T	71189937	2	4	911	1	0	0	0	0	0	0	0	1	1182	1074	38	3		3	ATP6V1B1	2	71189937	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	4522904	71189937	172009436	12	73588										
RGPD4	0	genome.wustl.edu	37	chr2	108499296	108499296	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cgatgttgcagctcagccctGaagaaaagggaaaacttgct	11	9	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	108499296	108499296	G	A	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	1	known	missense	c.5233	p.E1745K	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	91	0	0	72	18	20	-	-	-	A	108499296	G	A	108499296	3	1	911	1	0	0	0	0	1	0	0	0	13371	1291	45	2	5319	2	RGPD4	2	108499296	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	37309359	108499296	134700077	13	73589										
POTEE	0	genome.wustl.edu	37	chr2	131976163	131976163	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	actcaggagcaagatgggcaAgtggtgccaccactgcttcc	12	12	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	131976163	131976163	A	C	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	1	known	missense	c.188	p.K63T	0.032	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	196	0	0	110	13	10.4	-	-	-	C	131976163	A	C	131976163	3	2	911	1	0	0	0	0	1	0	0	0	12338	72	3	5	190	5	POTEE	2	131976163	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	23476867	131976163	111223210	14	73590										
DAPL1	0	genome.wustl.edu	37	chr2	159719127	159719127	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccagtctcacagcagagtcaTctcctatgcaggctgcctga	9	14	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	159719127	159719127	T	C	SNP	DAPL1	ENST00000343761	human	ensembl	69_37n	1	putative	silent	c.432	p.H144	0.092	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DAPL1	HGNC	ENSG00000163331	74	0	0	36	4	10	-	-	-	C	159719127	T	C	159719127	2	2	911	1	0	0	0	0	0	0	0	1	4270	1450	50	5		5	DAPL1	2	159719127	Silent	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	27742964	159719127	83480246	15	73591										
GRB14	0	genome.wustl.edu	37	chr2	165424837	165424837	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcacatacccttttctgtagAattattggcgttattgcagg	8	8	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	165424837	165424837	A	G	SNP	GRB14	ENST00000543549	human	ensembl	69_37n	-1	known	silent	c.51	p.I17	0.999	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	53	0	0	30	4	11.76	-	-	-	G	165424837	A	G	165424837	2	3	911	1	0	0	0	0	0	0	0	1	6808	261	9	5		5	GRB14	2	165424837	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	5705710	165424837	77774536	16	73592										
FSIP2	0	genome.wustl.edu	37	chr2	186664963	186664963	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atagaaataatagtgtacccCtttgcaacaaaatcaataga	5	7	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	186664963	186664963	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.11197	p.L3733I	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	53	0	0	28	7	20	-	-	-	A	186664963	C	A	186664963	3	1	911	1	0	0	0	0	1	0	0	0	6124	681	24	4	11263	4	FSIP2	2	186664963	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	21240126	186664963	56534410	17	73593										
FSIP2	0	genome.wustl.edu	37	chr2	186665824	186665824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccaaaatacaagcaccatttAacaagcattgtgcagtaaaa	5	9	0	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	186665824	186665824	A	G	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	missense	c.12058	p.N4020D	0.997	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	23	0	0	13	7	35	-	-	-	G	186665824	A	G	186665824	3	3	911	1	0	0	0	0	1	0	0	0	6124	362	13	5	12124	5	FSIP2	2	186665824	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	861	186665824	56533549	18	73594										
ALS2CR11	0	genome.wustl.edu	37	chr2	202402194	202402194	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttcagcttcctcatttacaaGagggatatctgcttaaacaa	6	9	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	202402194	202402194	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	69_37n	-1	known	missense	c.1171	p.L391F	0.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	144	0	0	79	24	23.08	-	-	-	A	202402194	G	A	202402194	3	1	911	1	0	0	0	0	1	0	0	0	552	942	33	2	4458	2	ALS2CR11	2	202402194	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	15736370	202402194	40797179	19	73595										
SPAG16	0	genome.wustl.edu	37	chr2	214160807	214160807	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaggtcaccataactgaagcAtctgaagatgactatgaata	9	7	2	5			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	214160807	214160807	A	T	SNP	SPAG16	ENST00000331683	human	ensembl	69_37n	1	known	silent	c.156	p.A52	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451	47	0	0	31	12	27.27	-	-	-	T	214160807	A	T	214160807	2	4	911	1	0	0	0	0	0	0	0	1	15069	204	8	5		5	SPAG16	2	214160807	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	11758613	214160807	29038566	20	73596										
ABCA12	0	genome.wustl.edu	37	chr2	215818665	215818665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccaaagccacaaacattgcaCctagtttattcatctcaaag	4	12	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	215818665	215818665	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.6560	p.G2187D	0.999	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	32	0	0	17	4	19.05	-	-	-	T	215818665	C	T	215818665	3	4	911	1	0	0	0	0	1	0	0	0	30	507	18	4	1267	4	ABCA12	2	215818665	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	1657858	215818665	27380708	21	73597										
PNKD	0	genome.wustl.edu	37	chr2	219206859	219206859	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aggggacctgctcttcctctCtggctgtggtgagtttcccc	12	13	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	219206859	219206859	C	T	SNP	PNKD	ENST00000273077	human	ensembl	69_37n	1	known	missense	c.773	p.S258F	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_errors	PNKD	HGNC	ENSG00000127838	67	0	0	53	14	20.9	-	-	-	T	219206859	C	T	219206859	3	4	911	1	0	0	0	0	1	0	0	0	12220	913	32	2	1164	2	PNKD	2	219206859	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	3388194	219206859	23992514	22	73598										
SPEG	0	genome.wustl.edu	37	chr2	220356570	220356570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgccacggacatctggggagCgggtgtgctcacttacatta	13	10	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	220356570	220356570	C	T	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	1	novel	missense	c.9440	p.A3147V	0.087	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	24	0	0	6	6	50	-	-	-	T	220356570	C	T	220356570	3	4	911	1	0	0	0	0	1	0	0	0	15127	768	27	1	9606	1	SPEG	2	220356570	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	1149711	220356570	22842803	23	73599										
SCG2	0	genome.wustl.edu	37	chr2	224462621	224462621	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gggagccttggcagaactttCtcctggttatatggattggg	14	7	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	224462621	224462621	C	T	SNP	SCG2	ENST00000305409	human	ensembl	69_37n	-1	known	silent	c.1380	p.E460	0.970	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	53	0	0	31	19	38	-	-	-	T	224462621	C	T	224462621	2	4	911	1	0	0	0	0	0	0	0	1	13978	912	32	2		2	SCG2	2	224462621	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	4106051	224462621	18736752	24	73600										
AGAP1	0	genome.wustl.edu	37	chr2	236761396	236761396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ggcctgctggagcccgtgccCgtcagtcctccccctggcca	12	19	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	2	236761396	236761396	C	T	SNP	AGAP1	ENST00000409457	human	ensembl	69_37n	1	novel	missense	c.1117	p.R373C	0.903	NULL	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	46	0	0	26	4	13.33	-	-	-	T	236761396	C	T	236761396	3	4	911	1	0	0	0	0	1	0	0	0	366	667	23	1		1	AGAP1	2	236761396	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	12298775	236761396	6437977	25	73601										
CNTN6	0	genome.wustl.edu	37	chr3	1445058	1445058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcacccattttctttccattGtcattgtgatttttcactgt	5	10	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	3	1445058	1445058	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	1	known	missense	c.3043	p.V1015I	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	53	0	0	36	12	25	-	-	-	A	1445058	G	A	1445058	3	1	911	1	0	0	0	0	1	0	0	0	3675	1377	48	4	3129	4	CNTN6	3	1445058	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		1445058	196577372	26	73602										
NGLY1	0	genome.wustl.edu	37	chr3	25770771	25770771	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aggtggagctgtttagaaatCttctcattttcacagggaat	10	6	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	3	25770771	25770771	C	T	SNP	NGLY1	ENST00000280700	human	ensembl	69_37n	-1	known	silent	c.1464	p.K488	0.994	superfamily_Galactose-bd-like,smart_Peptide_N_glycanase_PAW_dom	pfam_PUB_domain,pfam_Transglutaminase-like,pfam_Rad4/PNGase_transGLS-fold,pfam_Peptide_N_glycanase_PAW_dom,superfamily_Galactose-bd-like,smart_PUG-dom,smart_Transglutaminase-like,smart_Peptide_N_glycanase_PAW_dom	-	no_errors	NGLY1	HGNC	ENSG00000151092	39	0	0	29	5	14.71	-	-	-	T	25770771	C	T	25770771	2	4	911	1	0	0	0	0	0	0	0	1	10470	912	32	2		2	NGLY1	3	25770771	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	24325713	25770771	172251659	27	73603										
ZCWPW2	0	genome.wustl.edu	37	chr3	28566064	28566064	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgcaggcagtctgtttgaaaAccactatgaagaggactatc	10	8	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	3	28566064	28566064	A	C	SNP	ZCWPW2	ENST00000383768	human	ensembl	69_37n	1	known	missense	c.956	p.N319T	0.007	NULL	pfam_Znf_CW,pfam_PWWP,pfscan_PWWP,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559	64	0	0	30	5	14.29	-	-	-	C	28566064	A	C	28566064	3	2	911	1	0	0	0	0	1	0	0	0	17694	43	2	5	986	5	ZCWPW2	3	28566064	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	2795293	28566064	169456366	28	73604										
CD200R1	0	genome.wustl.edu	37	chr3	112648230	112648230	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tttgtttctttcttgtaggcTtttgtgcaggaaggctggcc	12	7	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	3	112648230	112648230	T	A	SNP	CD200R1	ENST00000308611	human	ensembl	69_37n	-1	known	missense	c.327	p.K109N	0.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like	-	no_errors	CD200R1	HGNC	ENSG00000163606	52	0	0	56	7	11.11	-	-	-	A	112648230	T	A	112648230	3	1	911	1	0	0	0	0	1	0	0	0	3010	1606	56	5	786	5	CD200R1	3	112648230	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	84082166	112648230	85374200	29	73605										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	26	0	0	10	34	77.27	-	-	-	G	178952085	A	G	178952085	3	3	911	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	66303855	178952085	19070345	30	73606										
TBC1D14	0	genome.wustl.edu	37	chr4	6956059	6956059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctcccctgcgctcctgttcaTggacaggtttgtggctgctt	11	13	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	4	6956059	6956059	T	C	SNP	TBC1D14	ENST00000410031	human	ensembl	69_37n	1	putative	missense	c.32	p.M11T	0.101	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D14	HGNC	ENSG00000132405	141	1	0.7	61	10	14.08	-	-	-	C	6956059	T	C	6956059	3	2	911	1	0	0	0	0	1	0	0	0	15695	1479	51	5		5	TBC1D14	4	6956059	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09		6956059	184198217	31	73607										
TRIML2	0	genome.wustl.edu	37	chr4	189012538	189012538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cacagaagattaagggctaaCagtagcatcacaagaaggac	10	8	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	4	189012538	189012538	C	A	SNP	TRIML2	ENST00000512729	human	ensembl	69_37n	-1	known	missense	c.1153	p.V385F	0.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	TRIML2	HGNC	ENSG00000179046	28	0	0	5	6	50	-	-	-	A	189012538	C	A	189012538	3	1	911	1	0	0	0	0	1	0	0	0	16647	478	17	4	14	4	TRIML2	4	189012538	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	182056479	189012538	2141738	32	73608										
GPR98	0	genome.wustl.edu	37	chr5	89925087	89925087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	taataacattttttcctatgGaaaaccagaagattgaaagc	6	6	0	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	5	89925087	89925087	G	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	1	known	missense	c.1570	p.E524K	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	27	0	0	28	8	22.22	-	-	-	A	89925087	G	A	89925087	3	1	911	1	0	0	0	0	1	0	0	0	6772	1175	41	2	1604	2	GPR98	5	89925087	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		89925087	90990173	33	73609										
PAM	0	genome.wustl.edu	37	chr5	102355495	102355495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccttgttgtgttgttacagaAttggaacatcgatcagttaa	9	6	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	5	102355495	102355495	A	C	SNP	PAM	ENST00000304400	human	ensembl	69_37n	1	known	missense	c.2433	p.K811N	0.999	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730	31	0	0	28	7	20	-	-	-	C	102355495	A	C	102355495	3	2	911	1	0	0	0	0	1	0	0	0	11485	115	4	5	2519	5	PAM	5	102355495	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	12430408	102355495	78559765	34	73610										
RNF145	0	genome.wustl.edu	37	chr5	158584471	158584471	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctatgtctgtcagtctacatCcaaatttgctactaaaaata	4	9	3	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	5	158584471	158584471	C	T	SNP	RNF145	ENST00000518284	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNF145	HGNC	ENSG00000145860	32	0	0	11	4	26.67	-	-	-	T	158584471	C	T	158584471	1	4	911	0	1	0	0	0	0	0	0	0	13533	870	30	2		2	RNF145	5	158584471	RNA	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	56228976	158584471	22330789	35	73611										
GABRB2	0	genome.wustl.edu	37	chr5	160886759	160886759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cccagagctggtctgccactCtgttgtccagagtcaagttt	10	12	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	5	160886759	160886759	C	T	SNP	GABRB2	ENST00000274547	human	ensembl	69_37n	-1	known	missense	c.329	p.R110K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	49	0	0	27	13	32.5	-	-	-	T	160886759	C	T	160886759	3	4	911	1	0	0	0	0	1	0	0	0	6216	913	32	2	1237	2	GABRB2	5	160886759	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	2302288	160886759	20028501	36	73612										
SNAP91	0	genome.wustl.edu	37	chr6	84290235	84290235	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tttgctggctgccattgcagGactgggtggtaccattgaga	14	8	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	6	84290235	84290235	G	C	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.2233	p.P745A	0.933	NULL	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	57	0	0	44	8	15.38	-	-	-	C	84290235	G	C	84290235	3	2	911	1	0	0	0	0	1	0	0	0	14922	1174	41	2	514	2	SNAP91	6	84290235	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		84290235	86824832	37	73613										
SLC22A16	0	genome.wustl.edu	37	chr6	110777688	110777688	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cttgtgtcccaagaaaaccaGataggaaaataaaccctaca	6	10	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	6	110777688	110777688	G	A	SNP	SLC22A16	ENST00000461487	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC22A16	HGNC	ENSG00000004809	42	0	0	22	7	24.14	-	-	-	A	110777688	G	A	110777688	1	1	911	0	1	0	0	0	0	0	0	0	14536	957	33	2		2	SLC22A16	6	110777688	RNA	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	26487453	110777688	60337379	38	73614										
LAMA2	0	genome.wustl.edu	37	chr6	129612789	129612789	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	taatgccggtggctctttctCtgaggtttgccacagtcaaa	10	10	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	6	129612789	129612789	C	G	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.2780	p.S927C	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	34	0	0	23	5	17.86	-	-	-	G	129612789	C	G	129612789	3	3	911	1	0	0	0	0	1	0	0	0	8660	913	32	2	2858	2	LAMA2	6	129612789	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	18835101	129612789	41502278	39	73615										
LAMA2	0	genome.wustl.edu	37	chr6	129612819	129612819	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccacagtcaaactggacagtGtgagtgcagagccaacgttc	11	11	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	6	129612819	129612819	G	C	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	1	known	missense	c.2810	p.C937S	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	35	0	0	17	4	19.05	-	-	-	C	129612819	G	C	129612819	3	2	911	1	0	0	0	0	1	0	0	0	8660	1377	48	4	2888	4	LAMA2	6	129612819	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	30	129612819	41502248	40	73616										
EYA4	0	genome.wustl.edu	37	chr6	133846230	133846230	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttgtgattggagatggccgaGatgaggagcatgccgctaac	15	7	0	4			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	6	133846230	133846230	G	C	SNP	EYA4	ENST00000355167	human	ensembl	69_37n	1	known	missense	c.1816	p.D606H	1.000	superfamily_HAD-like_dom,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	72	0	0	43	11	20.37	-	-	-	C	133846230	G	C	133846230	3	2	911	1	0	0	0	0	1	0	0	0	5368	942	33	2	1886	2	EYA4	6	133846230	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	4233411	133846230	37268837	41	73617										
CCM2	0	genome.wustl.edu	37	chr7	45115773	45115773	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ggccagggagaggcgcccggTgcagatggccccgggcggcc	20	14	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	45115773	45115773	T	C	SNP	CCM2	ENST00000461377	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCM2	HGNC	ENSG00000136280	53	0	0	41	5	10.64	-	-	-	C	45115773	T	C	45115773	1	2	911	0	1	0	0	0	0	0	0	0	2937	1711	59	5		5	CCM2	7	45115773	RNA	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09		45115773	114022890	42	73618										
GRM3	0	genome.wustl.edu	37	chr7	86415916	86415916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgttgcagaagcccaacgcgCgcgtcgtggtcctcttcatg	12	13	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	86415916	86415916	C	T	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	1	known	missense	c.808	p.R270C	0.985	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	25	0	0	13	7	35	-	-	-	T	86415916	C	T	86415916	3	4	911	1	0	0	0	0	1	0	0	0	6849	768	27	1	814	1	GRM3	7	86415916	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	41300143	86415916	72722747	43	73619										
ABCB1	0	genome.wustl.edu	37	chr7	87214944	87214944	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cagccccatggatgatggcaGccaaagttcccaccaccata	8	15	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	87214944	87214944	G	C	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.170	p.A57G	0.942	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	34	0	0	21	7	25	-	-	-	C	87214944	G	C	87214944	3	2	911	1	0	0	0	0	1	0	0	0	40	971	34	4	3772	4	ABCB1	7	87214944	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	799028	87214944	71923719	44	73620										
DLX6	0	genome.wustl.edu	37	chr7	96635448	96635450	+	In_Frame_Del	DEL	GCA	GCA	-													0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccgccgccgccgccgccgccGcagccgcactcgcagcagag							TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	96635448	96635450	GCA	-	DEL	DLX6	ENST00000518156	human	ensembl	69_37n	1	known	in_frame_del	c.159_161	p.Q54in_frame_del	0.992:0.996:0.995	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	20	0	0	6	3	33.33	-	-	-	-	96635450	GCA	-	96635448	7	5	911	1	0	1	0	1	0	0	0	0	4611	1074	38	0	161	0	DLX6	7	96635448	In_Frame_Del	DEL	GCA	TCGA-EW-A1PC-01B-11D-A21Q-09	9420504	96635448	62503215	45	73621										
ZAN	0	genome.wustl.edu	37	chr7	100392955	100392955	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atgcgccacctcccagaaagCcaggtgagggcatcgtccaa	11	14	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	100392955	100392955	C	G	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.7987	p.P2663A	0.090	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	34	0	0	20	28	58.33	-	-	-	G	100392955	C	G	100392955	3	3	911	1	0	0	0	0	1	0	0	0	17610	739	26	4	8501	4	ZAN	7	100392955	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	3757507	100392955	58745708	46	73622										
GPR37	0	genome.wustl.edu	37	chr7	124404828	124404828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cctccctgggtgctcgggctCgcagaacgtctcttgcagaa	12	14	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	124404828	124404828	C	T	SNP	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	missense	c.203	p.R68Q	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	54	0	0	39	13	25	-	-	-	T	124404828	C	T	124404828	3	4	911	1	0	0	0	0	1	0	0	0	6741	884	31	1	1646	1	GPR37	7	124404828	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	24011873	124404828	34733835	47	73623										
FAM71F1	0	genome.wustl.edu	37	chr7	128364895	128364895	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcactggtaataaactgaaaAccagtacagcttggaggagg	12	7	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	128364895	128364895	A	G	SNP	FAM71F1	ENST00000469348	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	FAM71F1	HGNC	ENSG00000135248	14	0	0	11	5	31.25	-	-	-	G	128364895	A	G	128364895	1	3	911	0	1	0	0	0	0	0	0	0	5657	58	2	5		5	FAM71F1	7	128364895	RNA	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	3960067	128364895	30773768	48	73624										
BPGM	0	genome.wustl.edu	37	chr7	134346825	134346825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cattctgatatctgctcatgGaaatagcagtagggcactcc	9	10	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	7	134346825	134346825	G	A	SNP	BPGM	ENST00000344924	human	ensembl	69_37n	1	known	missense	c.566	p.G189E	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331	39	0	0	17	11	39.29	-	-	-	A	134346825	G	A	134346825	3	1	911	1	0	0	0	0	1	0	0	0	1496	1174	41	2	568	2	BPGM	7	134346825	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	5981930	134346825	24791838	49	73625										
ADAM7	0	genome.wustl.edu	37	chr8	24324444	24324444	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tattcctgtacagagcttaaTtttaccagaaaaactgttcc	5	9	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	8	24324444	24324444	T	G	SNP	ADAM7	ENST00000175238	human	ensembl	69_37n	1	known	missense	c.522	p.N174K	0.826	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	51	0	0	46	9	16.36	-	-	-	G	24324444	T	G	24324444	3	3	911	1	0	0	0	0	1	0	0	0	251	1490	52	5	544	5	ADAM7	8	24324444	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09		24324444	122039578	50	73626										
WHSC1L1	0	genome.wustl.edu	37	chr8	38172997	38172997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gacaaacttgaatccatggaCtgcacatcagaaacgtctgc	8	11	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	8	38172997	38172997	C	T	SNP	WHSC1L1	ENST00000317025	human	ensembl	69_37n	-1	known	silent	c.2052	p.Q684	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	35	0	0	30	24	44.44	-	-	-	T	38172997	C	T	38172997	2	4	911	1	0	0	0	0	0	0	0	1	17460	564	20	4		4	WHSC1L1	8	38172997	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	13848553	38172997	108191025	51	73627										
ADAM9	0	genome.wustl.edu	37	chr8	38913139	38913139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccgaggaaaaaccagtgagtGtgatgttccagagtactgca	12	8	0	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	8	38913139	38913139	G	T	SNP	ADAM9	ENST00000487273	human	ensembl	69_37n	1	known	missense	c.1439	p.C480F	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM9	HGNC	ENSG00000168615	81	0	0	78	15	16.13	-	-	-	T	38913139	G	T	38913139	3	4	911	1	0	0	0	0	1	0	0	0	253	1377	48	4	1493	4	ADAM9	8	38913139	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	740142	38913139	107450883	52	73628										
RIMS2	0	genome.wustl.edu	37	chr8	104898096	104898096	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaggctcagggaccaagttcTtatgcacaaaggaccacaaa	10	10	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	8	104898096	104898096	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	silent	c.1269	p.S423	0.998	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	25	0	0	27	7	20.59	-	-	-	G	104898096	T	G	104898096	2	3	911	1	0	0	0	0	0	0	0	1	13454	1596	56	5		5	RIMS2	8	104898096	Silent	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	65984957	104898096	41465926	53	73629										
C8orf31	0	genome.wustl.edu	37	chr8	144126072	144126072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccctccctccccagaacctgCcctctgccctggcaccccag	6	24	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	8	144126072	144126072	C	T	SNP	C8orf31	ENST00000395172	human	ensembl	69_37n	1	known	missense	c.193	p.P65S	0.007	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335	28	0	0	33	11	25	-	-	-	T	144126072	C	T	144126072	3	4	911	1	0	0	0	0	1	0	0	0	2444	739	26	4	203	4	C8orf31	8	144126072	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	39227976	144126072	2237950	54	73630										
TAF1L	0	genome.wustl.edu	37	chr9	32631935	32631935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atcttttgtagtccgtatgcGcacataggcatcaatgacag	9	9	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	9	32631935	32631935	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.3643	p.R1215C	0.994	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	58	0	0	51	19	27.14	-	-	-	A	32631935	G	A	32631935	3	1	911	1	0	0	0	0	1	0	0	0	15615	1087	38	1	1841	1	TAF1L	9	32631935	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		32631935	108581496	55	73631										
FAM75A6	0	genome.wustl.edu	37	chr9	43626751	43626751	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgcctccttgctgctttcacCtgtggacgtggaggactgcc	12	13	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	9	43626751	43626751	C	G	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.1936	p.G646R	0.001	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	110	1	0.9	115	22	16.06	-	-	-	G	43626751	C	G	43626751	3	3	911	1	0	0	0	0	1	0	0	0	5667	681	24	4	2099	4	FAM75A6	9	43626751	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	10994816	43626751	97586680	56	73632										
GRIN3A	0	genome.wustl.edu	37	chr9	104449360	104449360	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aggaggaagtcggtgatgttCcagtcttcctggcacagcaa	13	9	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	9	104449360	104449360	C	A	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.822	p.W274C	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	39	0	0	26	5	16.13	-	-	-	A	104449360	C	A	104449360	3	1	911	1	0	0	0	0	1	0	0	0	6834	856	30	2	2557	2	GRIN3A	9	104449360	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	60822609	104449360	36764071	57	73633										
PAPPA	0	genome.wustl.edu	37	chr9	119097240	119097240	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	caggcggtacgtgtgagcttCagttcgcccctggtcgccat	13	13	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	9	119097240	119097240	C	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.3498	p.F1166L	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	21	0	0	15	5	25	-	-	-	A	119097240	C	A	119097240	3	1	911	1	0	0	0	0	1	0	0	0	11505	825	29	2	3548	2	PAPPA	9	119097240	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	14647880	119097240	22116191	58	73634										
ODF2	0	genome.wustl.edu	37	chr9	131260563	131260563	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctgcagatttctttggcttaTtcctgtggctccttggagat	10	9	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	9	131260563	131260563	T	C	SNP	ODF2	ENST00000488909	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.555	-	-	-	no_errors	ODF2	HGNC	ENSG00000136811	22	0	0	13	3	18.75	-	-	-	C	131260563	T	C	131260563	1	2	911	0	1	0	0	0	0	0	0	0	10900	1508	52	5		5	ODF2	9	131260563	RNA	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	12163323	131260563	9952868	59	73635										
KIAA1462	0	genome.wustl.edu	37	chr10	30317873	30317873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ggggagcccctgaggcaagcGggggctcacaccatactcat	14	13	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	10	30317873	30317873	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	missense	c.1204	p.R402C	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	30	0	0	15	7	31.82	-	-	-	A	30317873	G	A	30317873	3	1	911	1	0	0	0	0	1	0	0	0	8286	1116	39	1	2883	1	KIAA1462	10	30317873	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		30317873	105216874	60	73636										
AGAP8	0	genome.wustl.edu	37	chr10	51225623	51225623	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcacagtccacacagtgggcAttcccacgcatgttttggat	9	12	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	10	51225623	51225623	A	G	SNP	AGAP8	ENST00000425119	human	ensembl	69_37n	-1	known	silent	c.1359	p.N453	0.990	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP8	HGNC	ENSG00000174194	31	0	0	12	4	25	-	-	-	G	51225623	A	G	51225623	2	3	911	1	0	0	0	0	0	0	0	1	374	214	8	5		5	AGAP8	10	51225623	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	20907750	51225623	84309124	61	73637										
TLL2	0	genome.wustl.edu	37	chr10	98170190	98170190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cccatttgggaaaccaggtgCagaaaagtttcccgttgtgt	11	9	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	10	98170190	98170190	C	T	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.1090	p.A364T	0.997	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	48	0	0	38	10	20.83	-	-	-	T	98170190	C	T	98170190	3	4	911	1	0	0	0	0	1	0	0	0	16041	710	25	4	2009	4	TLL2	10	98170190	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	46944567	98170190	37364557	62	73638										
PAOX	0	genome.wustl.edu	37	chr10	135193582	135193582	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttccagctggctgctgagtaCgggctgctgggggagaagga	18	8	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	10	135193582	135193582	C	T	SNP	PAOX	ENST00000278060	human	ensembl	69_37n	1	known	silent	c.261	p.Y87	0.804	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	PAOX	HGNC	ENSG00000148832	151	0	0	33	30	47.62	-	-	-	T	135193582	C	T	135193582	2	4	911	1	0	0	0	0	0	0	0	1	11496	547	19	1		1	PAOX	10	135193582	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	37023392	135193582	341165	63	73639										
MUC15	0	genome.wustl.edu	37	chr11	26587134	26587134	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccaaagaatgctctgctgatGagttactggagaaatctgtt	10	7	2	4			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	26587134	26587134	G	A	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	missense	c.353	p.S118L	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	71	0	0	31	7	18.42	-	-	-	A	26587134	G	A	26587134	3	1	911	1	0	0	0	0	1	0	0	0	10044	1294	45	2	744	2	MUC15	11	26587134	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		26587134	108419382	64	73640										
DCDC1	0	genome.wustl.edu	37	chr11	31327864	31327864	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctttaatcactcttggttgaAgtttgtgtctttgagacaat	8	6	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	31327864	31327864	A	C	SNP	DCDC1	ENST00000452803	human	ensembl	69_37n	-1	known	missense	c.506	p.L169R	0.001	superfamily_Doublecortin_dom	superfamily_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000188682	40	0	0	33	8	19.51	-	-	-	C	31327864	A	C	31327864	3	2	911	1	0	0	0	0	1	0	0	0	4315	72	3	5	578	5	DCDC1	11	31327864	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	4740730	31327864	103678652	65	73641										
OR5L2	0	genome.wustl.edu	37	chr11	55594726	55594726	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aaactgcaccactgtggctgAgttcattctccttggactat	8	11	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	55594726	55594726	A	G	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	1	known	missense	c.32	p.E11G	0.020	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	63	0	0	56	7	11.11	-	-	-	G	55594726	A	G	55594726	3	3	911	1	0	0	0	0	1	0	0	0	11244	304	11	5	34	5	OR5L2	11	55594726	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	24266862	55594726	79411790	66	73642										
VWCE	0	genome.wustl.edu	37	chr11	61058851	61058851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aggagaagtgcaggtgagacAcgaggaactggggcctcccg	17	9	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	61058851	61058851	A	G	SNP	VWCE	ENST00000535599	human	ensembl	69_37n	-1	known	missense	c.308	p.V103A	0.000	NULL	NULL	-	no_errors	VWCE	HGNC	ENSG00000167992	28	0	0	21	5	19.23	-	-	-	G	61058851	A	G	61058851	3	3	911	1	0	0	0	0	1	0	0	0	17342	174	6	5		5	VWCE	11	61058851	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	5464125	61058851	73947665	67	73643										
AHNAK	0	genome.wustl.edu	37	chr11	62293880	62293880	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	caatgtccactttgggtcctGagacatcaatgtcagccttg	9	11	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	62293880	62293880	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.8009	p.S2670L	0.127	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	125	0	0	61	24	28.24	-	-	-	A	62293880	G	A	62293880	3	1	911	1	0	0	0	0	1	0	0	0	414	1294	45	2	9783	2	AHNAK	11	62293880	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	1235029	62293880	72712636	68	73644										
OR6X1	0	genome.wustl.edu	37	chr11	123624976	123624976	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	agattactgttcttgccactAcaaaggttcctagcagtttg	8	9	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	123624976	123624976	A	C	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	missense	c.251	p.V84G	0.905	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	70	0	0	56	8	12.5	-	-	-	C	123624976	A	C	123624976	3	2	911	1	0	0	0	0	1	0	0	0	11285	391	14	5	689	5	OR6X1	11	123624976	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	61331096	123624976	11381540	69	73645										
ROBO4	0	genome.wustl.edu	37	chr11	124763622	124763622	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcctcactggtatatctgtaCagacctgggagaaggcagga	12	9	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	124763622	124763622	C	T	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	silent	c.1509	p.L503	0.998	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	58	0	0	31	4	11.43	-	-	-	T	124763622	C	T	124763622	2	4	911	1	0	0	0	0	0	0	0	1	13602	465	17	4		4	ROBO4	11	124763622	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	1138646	124763622	10242894	70	73646										
SLC37A2	0	genome.wustl.edu	37	chr11	124946652	124946652	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	agatgctgtcccttcctgcaGgttccgaggcctcatcctgc	10	15	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	124946652	124946652	G	T	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	1	known	splice_site	c.60-1	e2-1	1.000	-	-	-	no_errors	SLC37A2	HGNC	ENSG00000134955	66	0	0	23	19	45.24	-	-	-	T	124946652	G	T	124946652	5	4	911	1	0	0	0	0	0	0	1	0	14687	1014	35	4	65	4	SLC37A2	11	124946652	Splice_Site	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	183030	124946652	10059864	71	73647										
PKNOX2	0	genome.wustl.edu	37	chr11	125255462	125255462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgcaggcaccctcttttcccGctcctgacgctgctgtttga	9	15	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	125255462	125255462	G	A	SNP	PKNOX2	ENST00000532623	human	ensembl	69_37n	1	known	missense	c.103	p.A35T	0.997	NULL	NULL	-	no_errors	PKNOX2	HGNC	ENSG00000165495	38	0	0	29	12	29.27	-	-	-	A	125255462	G	A	125255462	3	1	911	1	0	0	0	0	1	0	0	0	12057	1074	38	1	253	1	PKNOX2	11	125255462	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	308810	125255462	9751054	72	73648										
FLI1	0	genome.wustl.edu	37	chr11	128680489	128680489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgaggtggccaggcgctgggGcgagcggaaaagcaagccca	18	10	0	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	11	128680489	128680489	G	A	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	1	known	missense	c.965	p.G322D	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	28	0	0	6	13	68.42	-	-	-	A	128680489	G	A	128680489	3	1	911	1	0	0	0	0	1	0	0	0	5970	1203	42	4	999	4	FLI1	11	128680489	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	3425027	128680489	6326027	73	73649										
SUOX	0	genome.wustl.edu	37	chr12	56396419	56396419	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cagcctcaccttctctggtgAtaactccagcacccagggat	8	15	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	56396419	56396419	A	T	SNP	SUOX	ENST00000266971	human	ensembl	69_37n	1	known	missense	c.143	p.D48V	0.000	NULL	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5	-	no_errors	SUOX	HGNC	ENSG00000139531	18	0	0	18	8	30.77	-	-	-	T	56396419	A	T	56396419	3	4	911	1	0	0	0	0	1	0	0	0	15486	333	12	5	149	5	SUOX	12	56396419	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09		56396419	77455476	74	73650										
RNF41	0	genome.wustl.edu	37	chr12	56600315	56600315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cccatgtgctggttctcacaGgccatcacgacaacagcctg	9	15	2	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	56600315	56600315	G	A	SNP	RNF41	ENST00000345093	human	ensembl	69_37n	-1	known	silent	c.870	p.A290	1.000	pfam_USP8_interacting	pfam_USP8_interacting,pfam_Znf_C3HC4_RING-type,pfam_Ubox_domain,superfamily_TRAF-like,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	RNF41	HGNC	ENSG00000181852	39	0	0	12	7	36.84	-	-	-	A	56600315	G	A	56600315	2	1	911	1	0	0	0	0	0	0	0	1	13580	987	35	4		4	RNF41	12	56600315	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	203896	56600315	77251580	75	73651										
GLI1	0	genome.wustl.edu	37	chr12	57865641	57865641	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tatgtaaccccctggactctCttgatcttgacaacactcag	6	13	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	57865641	57865641	C	T	SNP	GLI1	ENST00000228682	human	ensembl	69_37n	1	known	missense	c.3118	p.L1040F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	54	0	0	28	5	15.15	-	-	-	T	57865641	C	T	57865641	3	4	911	1	0	0	0	0	1	0	0	0	6489	913	32	2	3160	2	GLI1	12	57865641	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	1265326	57865641	75986254	76	73652										
PPFIA2	0	genome.wustl.edu	37	chr12	81688618	81688618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcagaaactgactcacagttCgagatgttggaggagctgaa	13	7	1	4			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	81688618	81688618	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	69_37n	-1	known	missense	c.2921	p.R974Q	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	40	0	0	20	8	28.57	-	-	-	T	81688618	C	T	81688618	3	4	911	1	0	0	0	0	1	0	0	0	12383	884	31	1	888	1	PPFIA2	12	81688618	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	23822977	81688618	52163277	77	73653										
UBE3B	0	genome.wustl.edu	37	chr12	109972557	109972557	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gagaagctgcgctacgccatCagcatgaacacgggctttga	12	11	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	109972557	109972557	C	G	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.3177	p.I1059M	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	42	0	0	23	10	30.3	-	-	-	G	109972557	C	G	109972557	3	3	911	1	0	0	0	0	1	0	0	0	16977	816	29	2	3279	2	UBE3B	12	109972557	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	28283939	109972557	23879338	78	73654										
STX2	0	genome.wustl.edu	37	chr12	131297512	131297512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcaaacttaccctttaacttGgctcgaattttattcgcagt	5	10	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	12	131297512	131297512	G	C	SNP	STX2	ENST00000344271	human	ensembl	69_37n	-1	known	missense	c.223	p.Q75E	0.987	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	STX2	HGNC	ENSG00000111450	94	0	0	170	44	20.47	-	-	-	C	131297512	G	C	131297512	3	2	911	1	0	0	0	0	1	0	0	0	15436	1335	47	4	706	4	STX2	12	131297512	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	21324955	131297512	2554383	79	73655										
ARL11	0	genome.wustl.edu	37	chr13	50206328	50206328	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcttgtagcacatatctttcGttaaagatcagatcaataaa	5	7	4	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	13	50206328	50206328	G	C	SNP	ARL11	ENST00000490932	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	ARL11	HGNC	ENSG00000152213	21	0	0	11	3	21.43	-	-	-	C	50206328	G	C	50206328	1	2	911	0	1	0	0	0	0	0	0	0	929	1160	40	3		3	ARL11	13	50206328	RNA	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		50206328	64963550	80	73656										
MCF2L	0	genome.wustl.edu	37	chr13	113708697	113708697	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttttaggagtgatggcctcaCgcacacggcagcggccattc	12	12	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	13	113708697	113708697	C	T	SNP	MCF2L	ENST00000494043	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MCF2L	HGNC	ENSG00000126217	51	0	0	40	5	11.11	-	-	-	T	113708697	C	T	113708697	1	4	911	0	1	0	0	0	0	0	0	0	9450	551	19	1		1	MCF2L	13	113708697	RNA	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	63502369	113708697	1461181	81	73657										
DHRS4L2	0	genome.wustl.edu	37	chr14	24470241	24470241	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcagctctcttctttttccaGaggcggctcagtggtgatcg	11	11	4	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	14	24470241	24470241	G	C	SNP	DHRS4L2	ENST00000382755	human	ensembl	69_37n	1	known	splice_site	c.474-1	e5-1	0.969	-	-	-	no_errors	DHRS4L2	HGNC	ENSG00000187630	37	0	0	41	6	12.77	-	-	-	C	24470241	G	C	24470241	5	2	911	1	0	0	0	0	0	0	1	0	4530	956	33	2	497	2	DHRS4L2	14	24470241	Splice_Site	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		24470241	82879299	82	73658										
AHNAK2	0	genome.wustl.edu	37	chr14	105412344	105412344	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	accccgaacgacggcatcttGaacttgggcattttgaactt	9	11	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	14	105412344	105412344	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	silent	c.9444	p.F3148	0.771	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	122	0	0	47	12	20.34	-	-	-	A	105412344	G	A	105412344	2	1	911	1	0	0	0	0	0	0	0	1	415	1281	45	2		2	AHNAK2	14	105412344	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	80942103	105412344	1937196	83	73659										
RYR3	0	genome.wustl.edu	37	chr15	34042201	34042201	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaatggtggaggtcgtggctGagaactatcacaatatctgg	14	6	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	15	34042201	34042201	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.8221	p.E2741Q	1.000	pfam_Ryanodine_rcpt,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	54	0	0	25	10	28.57	-	-	-	C	34042201	G	C	34042201	3	2	911	1	0	0	0	0	1	0	0	0	13856	1291	45	2	8443	2	RYR3	15	34042201	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		34042201	68489191	84	73660										
GRIN2A	0	genome.wustl.edu	37	chr16	9858054	9858054	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	caccatctatagtgtagatcTtgtctctaggggagcttgat	10	8	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	16	9858054	9858054	T	G	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.3347	p.K1116T	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	41	0	0	12	4	25	-	-	-	G	9858054	T	G	9858054	3	3	911	1	0	0	0	0	1	0	0	0	6830	1609	56	5	1051	5	GRIN2A	16	9858054	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09		9858054	80496699	85	73661										
SH2B1	0	genome.wustl.edu	37	chr16	28883119	28883119	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aggggcatatgggggcctctCagaccgcccctcggcatcca	13	15	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	16	28883119	28883119	C	G	SNP	SH2B1	ENST00000322610	human	ensembl	69_37n	1	known	nonsense	c.1328	p.S443*	1.000	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188	43	0	0	20	4	16.67	-	-	-	G	28883119	C	G	28883119	4	3	911	1	0	0	0	0	0	1	0	0	14315	838	29	2	1346	2	SH2B1	16	28883119	Nonsense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	19025065	28883119	61471634	86	73662										
PHLPP2	0	genome.wustl.edu	37	chr16	71715711	71715711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcatgaagttgtgtcgcaagTtgaggtaggtaatatcttga	13	4	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	16	71715711	71715711	T	C	SNP	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	missense	c.833	p.N278S	1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	46	0	0	10	11	52.38	-	-	-	C	71715711	T	C	71715711	3	2	911	1	0	0	0	0	1	0	0	0	11929	1725	60	5	3194	5	PHLPP2	16	71715711	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	42832592	71715711	18639042	87	73663										
TP53	0	genome.wustl.edu	37	chr17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cccaggacaggcacaaacacGcacctcaaagctgttccgtc	8	16	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	2	20	90.91	-	-	-	A	7577121	G	A	7577121	3	1	911	1	0	0	0	0	1	0	0	0	16477	1087	38	1	469	1	TP53	17	7577121	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		7577121	73618089	88	73664										
BLMH	0	genome.wustl.edu	37	chr17	28612499	28612499	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cgtatacagaattctctcatCtatgacagaaacttattcag	5	9	4	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	28612499	28612499	C	G	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	splice_site	c.553-1	e6-1	1.000	-	-	-	no_errors	BLMH	HGNC	ENSG00000108578	61	0	0	63	12	16	-	-	-	G	28612499	C	G	28612499	5	3	911	1	0	0	0	0	0	0	1	0	1451	927	32	2	843	2	BLMH	17	28612499	Splice_Site	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	21035378	28612499	52582711	89	73665										
SRCIN1	0	genome.wustl.edu	37	chr17	36760753	36760753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tggctcccctcggcccccagGgtccctcggtccagcctcct	10	21	0	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	36760753	36760753	G	T	SNP	SRCIN1	ENST00000584266	human	ensembl	69_37n	-1	putative	missense	c.103	p.P35T	0.754	NULL	pfam_AIP3_C	-	no_stop_codon:bad_bp_length_for_coding_region	SRCIN1	HGNC	ENSG00000017373	46	0	0	34	4	10.53	-	-	-	T	36760753	G	T	36760753	3	4	911	1	0	0	0	0	1	0	0	0	15227	1247	43	4		4	SRCIN1	17	36760753	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	8148254	36760753	44434457	90	73666										
LRRC37A	0	genome.wustl.edu	37	chr17	44374710	44374710	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cctactacagaggttaaaccAtctccaaccacggaggagac	8	13	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	44374710	44374710	A	G	SNP	LRRC37A	ENST00000320254	human	ensembl	69_37n	1	known	silent	c.2211	p.P737	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	30	0	0	25	7	21.88	-	-	-	G	44374710	A	G	44374710	2	3	911	1	0	0	0	0	0	0	0	1	9057	204	8	5		5	LRRC37A	17	44374710	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	7613957	44374710	36820500	91	73667										
SMURF2	0	genome.wustl.edu	37	chr17	62542418	62542418	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	caggttgttagtgcaggcatCaatctggtgtatggtaaaga	13	5	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	62542418	62542418	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	missense	c.2110	p.D704N	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	52	0	0	63	9	12.5	-	-	-	T	62542418	C	T	62542418	3	4	911	1	0	0	0	0	1	0	0	0	14909	826	29	2	144	2	SMURF2	17	62542418	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	18167708	62542418	18652792	92	73668										
ABCA6	0	genome.wustl.edu	37	chr17	67119401	67119401	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgatggcttcttttccttggAattcaggagctactggttca	10	8	3	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	67119401	67119401	A	C	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	missense	c.1415	p.F472C	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	33	0	0	27	4	12.9	-	-	-	C	67119401	A	C	67119401	3	2	911	1	0	0	0	0	1	0	0	0	36	246	9	5	3558	5	ABCA6	17	67119401	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	4576983	67119401	14075809	93	73669										
TBCD	0	genome.wustl.edu	37	chr17	80882913	80882913	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gcgcccttccaggcttccttCtgaaaggccggctccagcag	11	16	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	17	80882913	80882913	C	T	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	1	known	silent	c.2359	p.L787	0.018	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	40	0	0	58	9	13.43	-	-	-	T	80882913	C	T	80882913	2	4	911	1	0	0	0	0	0	0	0	1	15728	912	32	2		2	TBCD	17	80882913	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	13763512	80882913	312297	94	73670										
ZNF625	0	genome.wustl.edu	37	chr19	12253327	12253327	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tttgtggatgggttcatctgCccatgagttctgtaagtcag	12	7	4	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	12253327	12253327	C	T	SNP	ZNF625	ENST00000414892	human	ensembl	69_37n	-1	putative	silent	c.273	p.G91	0.998	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_start_codon	ZNF625	Clone_based_vega_gene	ENSG00000257591	103	0	0	53	7	11.67	-	-	-	T	12253327	C	T	12253327	2	4	911	1	0	0	0	0	0	0	0	1	18145	754	26	4		4	ZNF625	19	12253327	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09		12253327	46875656	95	73671										
MAST1	0	genome.wustl.edu	37	chr19	12969421	12969421	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tcaacaagcagaacttgatcCtccgcaaccagatccagcag	7	14	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	12969421	12969421	C	A	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	1	known	missense	c.1234	p.L412I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	41	0	0	17	6	26.09	-	-	-	A	12969421	C	A	12969421	3	1	911	1	0	0	0	0	1	0	0	0	9395	681	24	4	1280	4	MAST1	19	12969421	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	716094	12969421	46159562	96	73672										
WIZ	0	genome.wustl.edu	37	chr19	15547904	15547904	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cagccccgcagaagtcacagCgcatcaggctgaaggtgcct	12	14	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	15547904	15547904	C	A	SNP	WIZ	ENST00000389282	human	ensembl	69_37n	-1	known	missense	c.2309	p.R770L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451	47	0	0	16	20	55.56	-	-	-	A	15547904	C	A	15547904	3	1	911	1	0	0	0	0	1	0	0	0	17472	768	27	3	2166	3	WIZ	19	15547904	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	2578483	15547904	43581079	97	73673										
NCAN	0	genome.wustl.edu	37	chr19	19359553	19359553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tggagaatgcctcactcatcGgtgcccgcaaggccaagtac	11	13	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	19359553	19359553	G	A	SNP	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	missense	c.3682	p.G1228S	0.995	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	39	0	0	12	5	29.41	-	-	-	A	19359553	G	A	19359553	3	1	911	1	0	0	0	0	1	0	0	0	10276	1116	39	1	3732	1	NCAN	19	19359553	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	3811649	19359553	39769430	98	73674										
HAUS5	0	genome.wustl.edu	37	chr19	36110619	36110619	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gaggaagtccggcatttgccCcacattctgttgggcacgct	12	12	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	36110619	36110619	C	T	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	silent	c.1365	p.P455	0.008	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	26	0	0	5	3	37.5	-	-	-	T	36110619	C	T	36110619	2	4	911	1	0	0	0	0	0	0	0	1	7020	610	22	4		4	HAUS5	19	36110619	Silent	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	16751066	36110619	23018364	99	73675										
EXOSC5	0	genome.wustl.edu	37	chr19	41897822	41897822	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	acgtgcccagcaccaccgccTcgcacgtgttcctgatcagc	9	18	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	41897822	41897822	T	A	SNP	EXOSC5	ENST00000221233	human	ensembl	69_37n	-1	known	missense	c.308	p.E103V	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC5	HGNC	ENSG00000077348	34	0	0	21	10	32.26	-	-	-	A	41897822	T	A	41897822	3	1	911	1	0	0	0	0	1	0	0	0	5354	1551	54	5	415	5	EXOSC5	19	41897822	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	5787203	41897822	17231161	100	73676										
PSG11	0	genome.wustl.edu	37	chr19	43519282	43519282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	acttaccaatgactctgattGtcaaggatgtggagctttcc	9	9	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	43519282	43519282	G	T	SNP	PSG11	ENST00000320078	human	ensembl	69_37n	-1	known	missense	c.950	p.T317K	0.001	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG11	HGNC	ENSG00000243130	176	0	0	47	46	49.46	-	-	-	T	43519282	G	T	43519282	3	4	911	1	0	0	0	0	1	0	0	0	12734	1377	48	4	65	4	PSG11	19	43519282	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	1621460	43519282	15609701	101	73677										
ZNF701	0	genome.wustl.edu	37	chr19	53086598	53086598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atcaaaccttgcatgtcatcGtagacttcatactggagaga	8	9	3	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	19	53086598	53086598	G	A	SNP	ZNF701	ENST00000301093	human	ensembl	69_37n	1	known	missense	c.1484	p.R495H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	50	0	0	27	4	12.9	-	-	-	A	53086598	G	A	53086598	3	1	911	1	0	0	0	0	1	0	0	0	18201	1145	40	1	1498	1	ZNF701	19	53086598	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	9567316	53086598	6042385	102	73678										
PLCB1	0	genome.wustl.edu	37	chr20	8678316	8678316	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tctgttgagatgtatcgccaAgtgctcctgtctggttgtcg	12	9	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	20	8678316	8678316	A	T	SNP	PLCB1	ENST00000338037	human	ensembl	69_37n	1	known	missense	c.1053	p.Q351H	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	71	0	0	60	18	23.08	-	-	-	T	8678316	A	T	8678316	3	4	911	1	0	0	0	0	1	0	0	0	12101	69	3	5	1095	5	PLCB1	20	8678316	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09		8678316	54347204	103	73679										
PLCB4	0	genome.wustl.edu	37	chr20	9460235	9460235	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	aattgttagaacaatagaaaAatagagcagtgtatgtgtgc	10	3	0	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	20	9460235	9460235	A	C	SNP	PLCB4	ENST00000464199	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	PLCB4	HGNC	ENSG00000101333	56	0	0	46	16	25.81	-	-	-	C	9460235	A	C	9460235	1	2	911	0	1	0	0	0	0	0	0	0	12104	29	1	5		5	PLCB4	20	9460235	RNA	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	781919	9460235	53565285	104	73680										
C20orf160	0	genome.wustl.edu	37	chr20	30605928	30605928	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atcgccgccgcctcctacctGcaggacgacgcgctgcacct	10	19	0	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	20	30605928	30605928	G	T	SNP	C20orf160	ENST00000300415	human	ensembl	69_37n	1	known	silent	c.429	p.L143	1.000	NULL	NULL	-	no_errors	C20orf160	HGNC	ENSG00000101331	15	0	0	31	11	26.19	-	-	-	T	30605928	G	T	30605928	2	4	911	1	0	0	0	0	0	0	0	1	2113	1306	46	4		4	C20orf160	20	30605928	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	21145693	30605928	32419592	105	73681										
CYP24A1	0	genome.wustl.edu	37	chr20	52774666	52774666	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	acccagaactgttgccttgtCaagagtccgagttgtaaatg	10	9	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	20	52774666	52774666	C	G	SNP	CYP24A1	ENST00000216862	human	ensembl	69_37n	-1	known	missense	c.1195	p.D399H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186	17	0	0	28	6	17.65	-	-	-	G	52774666	C	G	52774666	3	3	911	1	0	0	0	0	1	0	0	0	4185	826	29	2	361	2	CYP24A1	20	52774666	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	22168738	52774666	10250854	106	73682										
ITGB2	0	genome.wustl.edu	37	chr21	46328026	46328026	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tgctcagtccgaggacagacGggagccacccggcttctcct	12	15	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	21	46328026	46328026	G	A	SNP	ITGB2	ENST00000520389	human	ensembl	69_37n	-1	known	silent	c.219	p.P73	0.004	NULL	superfamily_Plexin-like_fold	-	no_errors	ITGB2	HGNC	ENSG00000160255	52	0	0	49	6	10.71	-	-	-	A	46328026	G	A	46328026	2	1	911	1	0	0	0	0	0	0	0	1	7948	1131	39	1		1	ITGB2	21	46328026	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09		46328026	1801869	107	73683										
COL18A1	0	genome.wustl.edu	37	chr21	46925149	46925149	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cagggccctcccggccccccAggccccccagggcccccttc	10	25	0	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	21	46925149	46925149	A	C	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	1	known	silent	c.4215	p.P1405	0.498	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	24	0	0	2	8	80	-	-	-	C	46925149	A	C	46925149	2	2	911	1	0	0	0	0	0	0	0	1	3705	175	7	5		5	COL18A1	21	46925149	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	597123	46925149	1204746	108	73684										
BCR	0	genome.wustl.edu	37	chr22	23654993	23654993	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gtggtcagcatggcagggacAgtgctttagccaaggcaggg	17	8	1	0			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	22	23654993	23654993	A	G	SNP	BCR	ENST00000458056	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	77	0	0	48	6	11.11	-	-	-	G	23654993	A	G	23654993	1	3	911	0	1	0	0	0	0	0	0	0	1392	203	7	5		5	BCR	22	23654993	RNA	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09		23654993	27649573	109	73685										
CNKSR2	0	genome.wustl.edu	37	chrX	21670489	21670489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccagacttgacatctaaagaAttccaacaatggaagcagat	7	9	1	4			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	21670489	21670489	A	C	SNP	CNKSR2	ENST00000379510	human	ensembl	69_37n	1	known	missense	c.2955	p.E985D	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970	75	0	0	63	15	19.23	-	-	-	C	21670489	A	C	21670489	3	2	911	1	0	0	0	0	1	0	0	0	3637	98	4	5	3050	5	CNKSR2	23	21670489	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09		21670489	133600071	110	73686										
FAM47B	0	genome.wustl.edu	37	chrX	34962126	34962126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tccgcggccttttgagagtcGgatgccccatctccgcctgg	12	15	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	34962126	34962126	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.1178	p.R393Q	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	43	0	0	18	27	58.7	-	-	-	A	34962126	G	A	34962126	3	1	911	1	0	0	0	0	1	0	0	0	5616	1116	39	1	1180	1	FAM47B	23	34962126	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	13291637	34962126	120308434	111	73687										
ZNF41	0	genome.wustl.edu	37	chrX	47307460	47307460	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tctctccaatatgagatttcTgatgtattttgaggcgcgac	9	8	2	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	47307460	47307460	T	G	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.1739	p.Q580P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	33	0	0	28	6	17.65	-	-	-	G	47307460	T	G	47307460	3	3	911	1	0	0	0	0	1	0	0	0	17985	1580	55	5	634	5	ZNF41	23	47307460	Missense_Mutation	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	12345334	47307460	107963100	112	73688										
GRIPAP1	0	genome.wustl.edu	37	chrX	48839761	48839761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cctccttctcatgccgtagaCgaactgctcccagctcttcc	6	18	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	48839761	48839761	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455H	0.002	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	60	0	0	25	15	37.5	-	-	-	T	48839761	C	T	48839761	3	4	911	1	0	0	0	0	1	0	0	0	6840	536	19	1	1259	1	GRIPAP1	23	48839761	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	1532301	48839761	106430799	113	73689										
HUWE1	0	genome.wustl.edu	37	chrX	53563167	53563167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	atcattttccagcagataaaCcagaccttggtagaagtggt	9	8	1	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	53563167	53563167	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.12472	p.V4158I	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	42	0	0	33	14	29.79	-	-	-	T	53563167	C	T	53563167	3	4	911	1	0	0	0	0	1	0	0	0	7515	507	18	4	672	4	HUWE1	23	53563167	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	4723406	53563167	101707393	114	73690										
ZMYM3	0	genome.wustl.edu	37	chrX	70460278	70460278	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ctcatcgctttcattgtttaTttcttacctttcagataaga	4	9	4	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	70460278	70460278	T	A	SNP	ZMYM3	ENST00000489332	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZMYM3	HGNC	ENSG00000147130	41	0	0	36	12	25	-	-	-	A	70460278	T	A	70460278	1	1	911	0	1	0	0	0	0	0	0	0	17797	1508	52	5		5	ZMYM3	23	70460278	RNA	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	16897111	70460278	84810282	115	73691										
MAGEE1	0	genome.wustl.edu	37	chrX	75650039	75650039	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cctgtgccctttgaagggttAgaagagagcccaaatgggcc	13	10	0	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	75650039	75650039	A	G	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	silent	c.1716	p.L572	0.013	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	53	0	0	31	14	31.11	-	-	-	G	75650039	A	G	75650039	2	3	911	1	0	0	0	0	0	0	0	1	9256	417	15	5		5	MAGEE1	23	75650039	Silent	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	5189761	75650039	79620521	116	73692										
NOX1	0	genome.wustl.edu	37	chrX	100105271	100105271	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gtaaaaggatgccattccagGagagagattgaggggcaatt	14	5	0	3			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	100105271	100105271	G	T	SNP	NOX1	ENST00000427768	human	ensembl	69_37n	-1	known	missense	c.55	p.P19T	0.610	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-bd_8,pfam_Fe_red_NAD-bd_6,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NOX1	HGNC	ENSG00000007952	44	0	0	15	30	66.67	-	-	-	T	100105271	G	T	100105271	3	4	911	1	0	0	0	0	1	0	0	0	10628	1161	41	2	712	2	NOX1	23	100105271	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	24455232	100105271	55165289	117	73693										
GPRASP1	0	genome.wustl.edu	37	chrX	101911239	101911239	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	cagctgctgagactagagaaGaagacaggctagcagctgag	14	8	0	5			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	101911239	101911239	G	T	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	1	known	nonsense	c.2398	p.E800*	0.001	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	51	0	0	33	7	17.5	-	-	-	T	101911239	G	T	101911239	4	4	911	1	0	0	0	0	0	1	0	0	6773	943	33	2	2400	2	GPRASP1	23	101911239	Nonsense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	1805968	101911239	53359321	118	73694										
RNF128	0	genome.wustl.edu	37	chrX	105970246	105970246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccctgagtccgcaggcacccGgttcccggggggctgaagca	15	15	0	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	105970246	105970246	G	A	SNP	RNF128	ENST00000255499	human	ensembl	69_37n	1	known	missense	c.103	p.G35S	0.080	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	38	0	0	30	8	21.05	-	-	-	A	105970246	G	A	105970246	3	1	911	1	0	0	0	0	1	0	0	0	13522	1116	39	1	515	1	RNF128	23	105970246	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	4059007	105970246	49300314	119	73695										
ALG13	0	genome.wustl.edu	37	chrX	110964851	110964851	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tctccagaaaatccatcaaaGatgcccttcccctataaggt	5	13	2	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	110964851	110964851	G	A	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	1	known	silent	c.1035	p.K345	1.000	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	64	0	0	41	20	32.79	-	-	-	A	110964851	G	A	110964851	2	1	911	1	0	0	0	0	0	0	0	1	515	933	33	2		2	ALG13	23	110964851	Silent	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	4994605	110964851	44305709	120	73696										
TRPC5	0	genome.wustl.edu	37	chrX	111095577	111095577	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	gttgccaggtagagggagttCattgcaaaatccatcaggtt	12	7	2	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	111095577	111095577	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.1326	p.M442I	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	36	0	0	42	5	10.64	-	-	-	T	111095577	C	T	111095577	3	4	911	1	0	0	0	0	1	0	0	0	16678	826	29	2	1623	2	TRPC5	23	111095577	Missense_Mutation	SNP	C	TCGA-EW-A1PC-01B-11D-A21Q-09	130726	111095577	44174983	121	73697										
LRCH2	0	genome.wustl.edu	37	chrX	114419069	114419069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	tttaaggggaagatcaaataGgtattttggcaatgttgata	11	2	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	114419069	114419069	G	T	SNP	LRCH2	ENST00000317135	human	ensembl	69_37n	-1	known	missense	c.526	p.L176I	0.987	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224	69	0	0	86	15	14.71	-	-	-	T	114419069	G	T	114419069	3	4	911	1	0	0	0	0	1	0	0	0	8999	991	35	4	1847	4	LRCH2	23	114419069	Missense_Mutation	SNP	G	TCGA-EW-A1PC-01B-11D-A21Q-09	3323492	114419069	40851491	122	73698										
DOCK11	0	genome.wustl.edu	37	chrX	117809965	117809965	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ttctggaagttatgcatacaAaaaagagacttttaggcact	8	6	1	1			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	117809965	117809965	A	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.5266	p.K1756Q	0.971	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	90	0	0	67	27	28.72	-	-	-	C	117809965	A	C	117809965	3	2	911	1	0	0	0	0	1	0	0	0	4721	15	1	5	5452	5	DOCK11	23	117809965	Missense_Mutation	SNP	A	TCGA-EW-A1PC-01B-11D-A21Q-09	3390896	117809965	37460595	123	73699										
XPNPEP2	0	genome.wustl.edu	37	chrX	128880270	128880270	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	accgacagtcgctactggacTcaggctgagcggcagatgga	14	11	1	2			TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	128880270	128880270	T	C	SNP	XPNPEP2	ENST00000371106	human	ensembl	69_37n	1	known	silent	c.357	p.T119	1.000	pfam_Creatinase	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	37	0	0	32	5	13.51	-	-	-	C	128880270	T	C	128880270	2	2	911	1	0	0	0	0	0	0	0	1	17540	1538	54	5		5	XPNPEP2	23	128880270	Silent	SNP	T	TCGA-EW-A1PC-01B-11D-A21Q-09	11070305	128880270	26390290	124	73700										
RBMX	0	genome.wustl.edu	37	chrX	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA													0.192	24	5.92210808088298e-05	2.60387811634349	3.5803324099723	2.23770775623269	0.163706814434297	0.696109845724967	15	ccacctctaagacctcttggINSagggcctctacttcttggag							TCGA-EW-A1PC-01B-11D-A21Q-09	TCGA-EW-A1PC-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1c0e384f-7254-4afe-93c0-b3fc6c6a7894	58ddddd4-cb14-4081-ac9f-c291dcddc24d	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	47	0	0	62	7	10.14	-	-	-	AA	135960147	-	AA	135960146	7	5	911	1	0	1	1	0	0	0	0	0	13234	1174	41	0	938	0	RBMX	23	135960146	Frame_Shift_Ins	INS	-	TCGA-EW-A1PC-01B-11D-A21Q-09	7079876	135960146	19310414	125	73701										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33099280	33099280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	attcatcagcactgaacttaTaaagccattcatccaaaaag	4	10	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	1	33099280	33099280	T	C	SNP	ZBTB8OS	ENST00000468695	human	ensembl	69_37n	-1	known	missense	c.329	p.Y110C	1.000	pfam_Archease_dom,superfamily_Archease_dom	pfam_Archease_dom,superfamily_Archease_dom	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261	24	0	0	27	6	18.18	-	-	-	C	33099280	T	C	33099280	3	2	912	1	0	0	0	0	1	0	0	0	17653	1406	49	5	226	5	ZBTB8OS	1	33099280	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09		33099280	216151341	1	73702										
ZMPSTE24	0	genome.wustl.edu	37	chr1	40734181	40734181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tttataatacttttgtgataGaagaaaaacatggcttcaat	6	4	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	1	40734181	40734181	G	C	SNP	ZMPSTE24	ENST00000372759	human	ensembl	69_37n	1	known	missense	c.448	p.E150Q	1.000	NULL	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073	68	0	0	50	14	21.88	-	-	-	C	40734181	G	C	40734181	3	2	912	1	0	0	0	0	1	0	0	0	17794	943	33	2	462	2	ZMPSTE24	1	40734181	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	7634901	40734181	208516440	2	73703										
ZMYND12	0	genome.wustl.edu	37	chr1	42905556	42905556	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cagatgataacgggcctcttCatagtttttcttagctatat	7	8	3	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	1	42905556	42905556	C	T	SNP	ZMYND12	ENST00000372565	human	ensembl	69_37n	-1	known	missense	c.565	p.E189K	0.976	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185	65	0	0	54	25	31.65	-	-	-	T	42905556	C	T	42905556	3	4	912	1	0	0	0	0	1	0	0	0	17803	835	29	2	552	2	ZMYND12	1	42905556	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	2171375	42905556	206345065	3	73704										
RNF220	0	genome.wustl.edu	37	chr1	45110399	45110399	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tcatcatgtgcagcggcaaaGagaacccggacagtgatgct	12	10	2	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	1	45110399	45110399	G	C	SNP	RNF220	ENST00000355387	human	ensembl	69_37n	1	known	missense	c.1156	p.E386Q	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147	37	0	0	30	6	16.67	-	-	-	C	45110399	G	C	45110399	3	2	912	1	0	0	0	0	1	0	0	0	13569	943	33	2	1186	2	RNF220	1	45110399	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	2204843	45110399	204140222	4	73705										
ITLN2	0	genome.wustl.edu	37	chr1	160921037	160921037	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gaagtcatgtcacagaaggtCtggtagacaacaccattctt	9	9	4	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	1	160921037	160921037	C	T	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	silent	c.237	p.Q79	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	24	0	0	22	11	33.33	-	-	-	T	160921037	C	T	160921037	2	4	912	1	0	0	0	0	0	0	0	1	7965	912	32	2		2	ITLN2	1	160921037	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	115810638	160921037	88329584	5	73706										
LRRTM1	0	genome.wustl.edu	37	chr2	80530609	80530609	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gtgagttccttaactcggcgCagtttctgaaaggcgtcccc	11	12	1	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	80530609	80530609	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	silent	c.336	p.L112	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	36	0	0	32	20	38.46	-	-	-	T	80530609	C	T	80530609	2	4	912	1	0	0	0	0	0	0	0	1	9105	697	25	4		4	LRRTM1	2	80530609	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09		80530609	162668764	6	73707										
MBD5	0	genome.wustl.edu	37	chr2	149247498	149247498	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ccaaaaaacagtgggacgggGagcaaagccccagaggggag	16	9	0	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	149247498	149247498	G	T	SNP	MBD5	ENST00000407073	human	ensembl	69_37n	1	known	nonsense	c.3598	p.E1200*	1.000	NULL	superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP	-	no_errors	MBD5	HGNC	ENSG00000204406	27	0	0	24	4	14.29	-	-	-	T	149247498	G	T	149247498	4	4	912	1	0	0	0	0	0	1	0	0	9418	1175	41	2	3624	2	MBD5	2	149247498	Nonsense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	68716889	149247498	93951875	7	73708										
ARL6IP6	0	genome.wustl.edu	37	chr2	153591569	153591569	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tcctgttgcagcttttcttgGacagtgacttactttgattc	8	9	1	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	153591569	153591569	G	C	SNP	ARL6IP6	ENST00000326446	human	ensembl	69_37n	1	known	missense	c.516	p.W172C	1.000	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	59	0	0	43	13	23.21	-	-	-	C	153591569	G	C	153591569	3	2	912	1	0	0	0	0	1	0	0	0	949	1183	41	2	526	2	ARL6IP6	2	153591569	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	4344071	153591569	89607804	8	73709										
ACVR1C	0	genome.wustl.edu	37	chr2	158399221	158399221	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	caagtcagtcgtcttacctcTtggttcccactttaggattc	7	12	3	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	158399221	158399221	T	G	SNP	ACVR1C	ENST00000243349	human	ensembl	69_37n	-1	known	missense	c.1097	p.K366T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612	47	0	0	46	18	28.12	-	-	-	G	158399221	T	G	158399221	3	3	912	1	0	0	0	0	1	0	0	0	222	1609	56	5	400	5	ACVR1C	2	158399221	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	4807652	158399221	84800152	9	73710										
GULP1	0	genome.wustl.edu	37	chr2	189452661	189452661	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cctccagatattcaatcaaaAttagatgagatgcaggtgac	8	8	2	4			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	189452661	189452661	A	G	SNP	GULP1	ENST00000451191	human	ensembl	69_37n	1	putative	missense	c.302	p.N101S	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GULP1	HGNC	ENSG00000144366	68	0	0	36	17	32.08	-	-	-	G	189452661	A	G	189452661	3	3	912	1	0	0	0	0	1	0	0	0	6952	98	4	5	862	5	GULP1	2	189452661	Missense_Mutation	SNP	A	TCGA-EW-A1PD-01A-11D-A142-09	31053440	189452661	53746712	10	73711										
ATG16L1	0	genome.wustl.edu	37	chr2	234201045	234201045	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tgtttcagtgcacctgggttCaagtgcggctctgactggac	13	10	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	234201045	234201045	C	G	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.1593	p.F531L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	66	0	0	43	24	35.82	-	-	-	G	234201045	C	G	234201045	3	3	912	1	0	0	0	0	1	0	0	0	1095	825	29	2	1655	2	ATG16L1	2	234201045	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	44748384	234201045	8998328	11	73712										
COL6A3	0	genome.wustl.edu	37	chr2	238262027	238262027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ctccctcaaagcccggctggCcaggaccgcccttgttgccc	10	19	1	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	2	238262027	238262027	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.6647	p.G2216V	1.000	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	26	0	0	22	16	42.11	-	-	-	A	238262027	C	A	238262027	3	1	912	1	0	0	0	0	1	0	0	0	3731	739	26	4	2966	4	COL6A3	2	238262027	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	4060982	238262027	4937346	12	73713										
SLC35A5	0	genome.wustl.edu	37	chr3	112299994	112299994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	aggttaccactgtcattatcAcaacagtgtctgtcctggtc	8	11	3	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	112299994	112299994	A	G	SNP	SLC35A5	ENST00000492406	human	ensembl	69_37n	1	known	missense	c.1030	p.T344A	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_DUF250,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A5	HGNC	ENSG00000138459	41	0	0	25	7	21.88	-	-	-	G	112299994	A	G	112299994	3	3	912	1	0	0	0	0	1	0	0	0	14663	159	6	5	1048	5	SLC35A5	3	112299994	Missense_Mutation	SNP	A	TCGA-EW-A1PD-01A-11D-A142-09		112299994	85722436	13	73714										
WDR52	0	genome.wustl.edu	37	chr3	113098230	113098230	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ggttgacggaataaatatttCaggtaatggctcttcttcct	9	7	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	113098230	113098230	C	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	missense	c.2221	p.E741K	0.002	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	42	0	0	30	10	25	-	-	-	T	113098230	C	T	113098230	3	4	912	1	0	0	0	0	1	0	0	0	17401	835	29	2	3434	2	WDR52	3	113098230	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	798236	113098230	84924200	14	73715										
WDR52	0	genome.wustl.edu	37	chr3	113122794	113122794	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	acatgacttgcttgtccctcGacagagctccactttgatca	7	13	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	113122794	113122794	G	A	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	nonsense	c.1075	p.R359*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	58	0	0	38	29	43.28	-	-	-	A	113122794	G	A	113122794	4	1	912	1	0	0	0	0	0	1	0	0	17401	1066	37	1	4612	1	WDR52	3	113122794	Nonsense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	24564	113122794	84899636	15	73716										
ZBTB20	0	genome.wustl.edu	37	chr3	114069881	114069881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tcctcggattcgttgcgttcCaggatctgcaccctttgctg	10	13	1	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	114069881	114069881	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	69_37n	-1	known	silent	c.1044	p.L348	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722	28	0	0	23	12	34.29	-	-	-	T	114069881	C	T	114069881	2	4	912	1	0	0	0	0	0	0	0	1	17625	581	21	4		4	ZBTB20	3	114069881	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	947087	114069881	83952549	16	73717										
KLF15	0	genome.wustl.edu	37	chr3	126070957	126070957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tggagggcaggttcaagttgGaggagggtaccacctggggc	19	7	1	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	126070957	126070957	G	A	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.809	p.S270F	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	18	0	0	19	12	38.71	-	-	-	A	126070957	G	A	126070957	3	1	912	1	0	0	0	0	1	0	0	0	8396	1174	41	2	449	2	KLF15	3	126070957	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	12001076	126070957	71951473	17	73718										
TMCC1	0	genome.wustl.edu	37	chr3	129389639	129389639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ggagaagctggaaaacccacCtttgacactatccaccacac	7	14	0	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	3	129389639	129389639	C	G	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1045	p.G349R	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	47	0	0	28	13	31.71	-	-	-	G	129389639	C	G	129389639	3	3	912	1	0	0	0	0	1	0	0	0	16087	681	24	4	928	4	TMCC1	3	129389639	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	3318682	129389639	68632791	18	73719										
CAMK2D	0	genome.wustl.edu	37	chr4	114429417	114429417	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tctgaacactcgaactggacTtccttttctgaattgaccag	7	11	2	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	4	114429417	114429417	T	A	SNP	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	missense	c.992	p.K331M	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	31	0	0	27	11	28.95	-	-	-	A	114429417	T	A	114429417	3	1	912	1	0	0	0	0	1	0	0	0	2626	1609	56	5	622	5	CAMK2D	4	114429417	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09		114429417	76724859	19	73720										
GRXCR2	0	genome.wustl.edu	37	chr5	145252322	145252322	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gagcacatctggggcctgggGacttccccagacccataaac	11	14	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	5	145252322	145252322	G	A	SNP	GRXCR2	ENST00000377976	human	ensembl	69_37n	-1	known	silent	c.210	p.V70	0.823	NULL	NULL	-	no_errors	GRXCR2	HGNC	ENSG00000204928	35	0	0	24	7	22.58	-	-	-	A	145252322	G	A	145252322	2	1	912	1	0	0	0	0	0	0	0	1	6864	1161	41	2		2	GRXCR2	5	145252322	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		145252322	35662938	20	73721										
CDKAL1	0	genome.wustl.edu	37	chr6	21198270	21198270	+	Frame_Shift_Del	DEL	G	G	-													0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	agattggtgaaagacaacaaGtgttagtaacagaagaatct							TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	21198270	21198270	G	-	DEL	CDKAL1	ENST00000274695	human	ensembl	69_37n	1	known	frame_shift_del	c.1318	p.V440fs	1.000	pfam_TRAM_dom,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	46	0	0	26	8	22.86	-	-	-	-	21198270	G	-	21198270	7	5	912	1	0	1	0	1	0	0	0	0	3181	1029	36	0	1364	0	CDKAL1	6	21198270	Frame_Shift_Del	DEL	G	TCGA-EW-A1PD-01A-11D-A142-09		21198270	149916797	21	73722	516	2								
CDKAL1	0	genome.wustl.edu	37	chr6	21198272	21198272	+	Silent	SNP	G	G	T													0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	attggtgaaagacaacaagtGttagtaacagaagaatcttt							TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	21198272	21198272	G	T	SNP	CDKAL1	ENST00000274695	human	ensembl	69_37n	1	known	silent	c.1320	p.V440	1.000	pfam_TRAM_dom,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	47	0	0	26	9	25.71	-	-	-	T	21198272	G	T	21198272	2	4	912	1	0	0	0	0	0	0	0	1	3181	1364	48	4		4	CDKAL1	6	21198272	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	2	21198272	149916795	22	73723	516	2								
COL9A1	0	genome.wustl.edu	37	chr6	70935663	70935663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cctatagctccaggcaaaccGttgggacctcttcctggagg	11	13	1	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	70935663	70935663	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	silent	c.2553	p.N851	0.998	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	23	0	0	16	5	23.81	-	-	-	A	70935663	G	A	70935663	2	1	912	1	0	0	0	0	0	0	0	1	3737	1136	40	1		1	COL9A1	6	70935663	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	49737391	70935663	100179404	23	73724										
GRM1	0	genome.wustl.edu	37	chr6	146480580	146480580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	caaaatctacagcaacgctgGggagaagagctttgaccgac	11	10	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	146480580	146480580	G	T	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	1	known	missense	c.797	p.G266V	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	33	0	0	26	12	31.58	-	-	-	T	146480580	G	T	146480580	3	4	912	1	0	0	0	0	1	0	0	0	6847	1232	43	4	803	4	GRM1	6	146480580	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	75544917	146480580	24634487	24	73725										
MAS1	0	genome.wustl.edu	37	chr6	160328344	160328344	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ctgtttggctacaacacgggCctctatctgctgacggccat	10	13	2	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	160328344	160328344	C	G	SNP	MAS1	ENST00000252660	human	ensembl	69_37n	1	known	silent	c.357	p.G119	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mas_TM,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368	38	0	0	21	6	22.22	-	-	-	G	160328344	C	G	160328344	2	3	912	1	0	0	0	0	0	0	0	1	9391	726	26	4		4	MAS1	6	160328344	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	13847764	160328344	10786723	25	73726										
SLC22A3	0	genome.wustl.edu	37	chr6	160858218	160858218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	atagtggcaggggtggcatgCcttgtcactgcgttcttacc	13	10	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	6	160858218	160858218	C	T	SNP	SLC22A3	ENST00000392145	human	ensembl	69_37n	1	known	silent	c.1263	p.C421	0.996	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477	32	0	0	18	7	26.92	-	-	-	T	160858218	C	T	160858218	2	4	912	1	0	0	0	0	0	0	0	1	14544	747	26	4		4	SLC22A3	6	160858218	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	529874	160858218	10256849	26	73727										
PTPRZ1	0	genome.wustl.edu	37	chr7	121698936	121698936	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cattagtaaaacttttgaacTtataagtgttataaaagaag	6	3	0	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	7	121698936	121698936	T	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	69_37n	1	known	missense	c.6611	p.L2204H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	54	0	0	57	10	14.93	-	-	-	A	121698936	T	A	121698936	3	1	912	1	0	0	0	0	1	0	0	0	12897	1609	56	5	6721	5	PTPRZ1	7	121698936	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09		121698936	37439727	27	73728										
RB1CC1	0	genome.wustl.edu	37	chr8	53570383	53570383	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cagtcagtggtggaggagttCtcggtgaggtagtagttgta	17	4	2	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	8	53570383	53570383	C	A	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.2006	p.R669I	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	23	0	0	12	8	40	-	-	-	A	53570383	C	A	53570383	3	1	912	1	0	0	0	0	1	0	0	0	13182	913	32	2	2818	2	RB1CC1	8	53570383	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09		53570383	92793639	28	73729										
CNGB3	0	genome.wustl.edu	37	chr8	87588343	87588343	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tccttcttcctctcctccttCagaattttctttcttctgga	3	14	6	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	8	87588343	87588343	C	T	SNP	CNGB3	ENST00000320005	human	ensembl	69_37n	-1	known	missense	c.2119	p.E707K	0.026	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	55	0	0	43	46	51.69	-	-	-	T	87588343	C	T	87588343	3	4	912	1	0	0	0	0	1	0	0	0	3631	835	29	2	314	2	CNGB3	8	87588343	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	34017960	87588343	58775679	29	73730										
CUBN	0	genome.wustl.edu	37	chr10	17110195	17110195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gttggactaatatatgccaaGtacagttgataccgtggggg	13	6	0	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	10	17110195	17110195	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	missense	c.2876	p.T959I	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	32	0	0	36	9	20	-	-	-	A	17110195	G	A	17110195	3	1	912	1	0	0	0	0	1	0	0	0	4082	1029	36	4	8183	4	CUBN	10	17110195	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		17110195	118424552	30	73731										
GSTO2	0	genome.wustl.edu	37	chr10	106037866	106037866	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	aaaagatgttattggagctaTtttgtaaggtatattcaatt	8	2	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	10	106037866	106037866	T	A	SNP	GSTO2	ENST00000338595	human	ensembl	69_37n	1	known	missense	c.358	p.F120I	1.000	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_omega	-	no_errors	GSTO2	HGNC	ENSG00000065621	33	0	0	38	10	20.83	-	-	-	A	106037866	T	A	106037866	3	1	912	1	0	0	0	0	1	0	0	0	6894	1493	52	5	368	5	GSTO2	10	106037866	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	88927671	106037866	29496881	31	73732										
TIAL1	0	genome.wustl.edu	37	chr10	121347702	121347702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gcttttacagggtccaatctGactgaacaactgaagtataa	8	8	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	10	121347702	121347702	G	C	SNP	TIAL1	ENST00000369093	human	ensembl	69_37n	-1	known	missense	c.91	p.Q31E	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923	52	0	0	28	13	31.71	-	-	-	C	121347702	G	C	121347702	3	2	912	1	0	0	0	0	1	0	0	0	15984	1299	45	2	1131	2	TIAL1	10	121347702	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	15309836	121347702	14187045	32	73733										
TSPAN32	0	genome.wustl.edu	37	chr11	2337855	2337855	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gtggtttgccatccgctgtgGctgcagcttggaccgcaagg	15	11	0	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	2337855	2337855	G	C	SNP	TSPAN32	ENST00000182290	human	ensembl	69_37n	1	known	missense	c.677	p.G226A	0.003	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	-	no_errors	TSPAN32	HGNC	ENSG00000064201	37	0	0	13	10	43.48	-	-	-	C	2337855	G	C	2337855	3	2	912	1	0	0	0	0	1	0	0	0	16743	1203	42	4	707	4	TSPAN32	11	2337855	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		2337855	132668661	33	73734										
TRPM5	0	genome.wustl.edu	37	chr11	2439002	2439002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cgtgtccagctcctcggagcCctcctgctcgaagtcataca	9	16	1	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	2439002	2439002	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.970	p.G324S	0.817	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	25	0	0	12	5	29.41	-	-	-	T	2439002	C	T	2439002	3	4	912	1	0	0	0	0	1	0	0	0	16685	623	22	4	2605	4	TRPM5	11	2439002	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	101147	2439002	132567514	34	73735										
SBF2	0	genome.wustl.edu	37	chr11	10019855	10019855	+	Silent	SNP	G	G	C													0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tgatgtagaagtggttctggGagggaagagaggtgaataca							TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	10019855	10019855	G	C	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	silent	c.933	p.L311	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	58	0	0	26	13	33.33	-	-	-	C	10019855	G	C	10019855	2	2	912	1	0	0	0	0	0	0	0	1	13946	1161	41	2		2	SBF2	11	10019855	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	7580853	10019855	124986661	35	73736	517	2								
SBF2	0	genome.wustl.edu	37	chr11	10019856	10019856	+	Missense_Mutation	SNP	A	A	C													0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gatgtagaagtggttctgggAgggaagagaggtgaatacat							TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	10019856	10019856	A	C	SNP	SBF2	ENST00000256190	human	ensembl	69_37n	-1	known	missense	c.932	p.L311R	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812	58	0	0	26	13	33.33	-	-	-	C	10019856	A	C	10019856	3	2	912	1	0	0	0	0	1	0	0	0	13946	304	11	5	4745	5	SBF2	11	10019856	Missense_Mutation	SNP	A	TCGA-EW-A1PD-01A-11D-A142-09	1	10019856	124986660	36	73737	517	2								
FAM111A	0	genome.wustl.edu	37	chr11	58920622	58920622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gatccctcagggtcagcgagCaaagaaatgtcaggaacgtg	13	9	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	58920622	58920622	C	G	SNP	FAM111A	ENST00000361723	human	ensembl	69_37n	1	known	missense	c.1481	p.A494G	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111A	HGNC	ENSG00000166801	32	0	0	15	9	37.5	-	-	-	G	58920622	C	G	58920622	3	3	912	1	0	0	0	0	1	0	0	0	5439	710	25	4	1487	4	FAM111A	11	58920622	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	48900766	58920622	76085894	37	73738										
MS4A10	0	genome.wustl.edu	37	chr11	60558546	60558546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tggtgctgaagtcttggtatCcattctggggggctgcctct	14	9	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	60558546	60558546	C	A	SNP	MS4A10	ENST00000308287	human	ensembl	69_37n	1	known	missense	c.283	p.P95T	0.942	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689	36	0	0	28	7	20	-	-	-	A	60558546	C	A	60558546	3	1	912	1	0	0	0	0	1	0	0	0	9927	855	30	2	289	2	MS4A10	11	60558546	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	1637924	60558546	74447970	38	73739										
PC	0	genome.wustl.edu	37	chr11	66619395	66619395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gggcactcatacaggaagcgCatggcgacgtcaaacgtggc	14	11	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	11	66619395	66619395	C	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	missense	c.1848	p.M616I	1.000	pfam_PYR_CT,pirsf_Pyruv_COase,pfscan_PYR_CT,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	18	0	0	12	4	25	-	-	-	T	66619395	C	T	66619395	3	4	912	1	0	0	0	0	1	0	0	0	11570	710	25	4	1720	4	PC	11	66619395	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	6060849	66619395	68387121	39	73740										
SLC26A10	0	genome.wustl.edu	37	chr12	58018918	58018918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	acttataggagacttcaaagCcagatggcccaatggttgca	10	9	1	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	12	58018918	58018918	C	T	SNP	SLC26A10	ENST00000320442	human	ensembl	69_37n	1	known	missense	c.1357	p.P453S	0.000	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A10	HGNC	ENSG00000135502	81	0	0	57	21	26.92	-	-	-	T	58018918	C	T	58018918	3	4	912	1	0	0	0	0	1	0	0	0	14604	739	26	4	1399	4	SLC26A10	12	58018918	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09		58018918	75832977	40	73741										
C12orf56	0	genome.wustl.edu	37	chr12	64746739	64746739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tcctgacactgtttgactttTtacactcttttttcaaaacg	4	10	2	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	12	64746739	64746739	T	G	SNP	C12orf56	ENST00000333722	human	ensembl	69_37n	-1	known	missense	c.350	p.K117T	0.013	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	47	0	0	51	7	12.07	-	-	-	G	64746739	T	G	64746739	3	3	912	1	0	0	0	0	1	0	0	0	1712	1841	64	5	1566	5	C12orf56	12	64746739	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	6727821	64746739	69105156	41	73742										
PLXNC1	0	genome.wustl.edu	37	chr12	94673274	94673274	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	aacgtcgtctttgaaaaaatCccggaaaacgagagtgcaga	10	8	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	12	94673274	94673274	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	1	known	silent	c.3624	p.I1208	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	47	0	0	20	11	35.48	-	-	-	T	94673274	C	T	94673274	2	4	912	1	0	0	0	0	0	0	0	1	12200	845	30	2		2	PLXNC1	12	94673274	Silent	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	29926535	94673274	39178621	42	73743										
UHRF1BP1L	0	genome.wustl.edu	37	chr12	100496589	100496589	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gtgatgggccattagggcttCttggttcttcacatgtactc	11	9	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	12	100496589	100496589	C	G	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	missense	c.293	p.R98T	0.983	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	89	0	0	76	43	35.83	-	-	-	G	100496589	C	G	100496589	3	3	912	1	0	0	0	0	1	0	0	0	17066	913	32	2	4197	2	UHRF1BP1L	12	100496589	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	5823315	100496589	33355306	43	73744										
FBXW8	0	genome.wustl.edu	37	chr12	117465283	117465283	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	acggtaatgcgaaacgccgaCctggacagcttcactactca	9	13	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	12	117465283	117465283	C	G	SNP	FBXW8	ENST00000309909	human	ensembl	69_37n	1	known	missense	c.1626	p.D542E	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_Quinonprotein_ADH-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989	23	0	0	21	7	25	-	-	-	G	117465283	C	G	117465283	3	3	912	1	0	0	0	0	1	0	0	0	5816	506	18	4	1664	4	FBXW8	12	117465283	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	16968694	117465283	16386612	44	73745										
ATP8A2	0	genome.wustl.edu	37	chr13	26129206	26129206	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cttaatgaagagcttgggcaGgtgaaaaagcctctgggaac	13	7	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	13	26129206	26129206	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	69_37n	1	known	silent	c.1263	p.Q421	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC	ENSG00000132932	32	0	0	10	32	76.19	-	-	-	A	26129206	G	A	26129206	2	1	912	1	0	0	0	0	0	0	0	1	1197	1014	35	4		4	ATP8A2	13	26129206	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		26129206	89040672	45	73746										
RB1	0	genome.wustl.edu	37	chr13	49039484	49039484	+	Frame_Shift_Del	DEL	A	A	-													0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gaaggtctgccaacaccaacAaaaatgactccaagatcaag							TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	13	49039484	49039484	A	-	DEL	RB1	ENST00000267163	human	ensembl	69_37n	1	known	frame_shift_del	c.2469	p.M825fs	0.998	pfam_Rb_C	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	60	0	0	26	27	50.94	-	-	-	-	49039484	A	-	49039484	7	5	912	1	0	1	0	1	0	0	0	0	13181	117	5	0	2559	0	RB1	13	49039484	Frame_Shift_Del	DEL	A	TCGA-EW-A1PD-01A-11D-A142-09	22910278	49039484	66130394	46	73747										
SLITRK6	0	genome.wustl.edu	37	chr13	86369992	86369992	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	acaattgcaggcccatttgtTgtcctccaactgaagatcca	7	12	0	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	13	86369992	86369992	T	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.652	p.N218Y	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	16	0	0	14	6	30	-	-	-	A	86369992	T	A	86369992	3	1	912	1	0	0	0	0	1	0	0	0	14836	1812	63	5	1877	5	SLITRK6	13	86369992	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	37330508	86369992	28799886	47	73748										
CCDC88C	0	genome.wustl.edu	37	chr14	91779648	91779648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cagccgcttggcctccttctCcagcagcttcttatccttct	6	17	3	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	14	91779648	91779648	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.2512	p.E838K	1.000	superfamily_Prefoldin	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	31	0	0	22	11	33.33	-	-	-	T	91779648	C	T	91779648	3	4	912	1	0	0	0	0	1	0	0	0	2892	864	30	2	3638	2	CCDC88C	14	91779648	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09		91779648	15569892	48	73749										
MGRN1	0	genome.wustl.edu	37	chr16	4715104	4715104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gcccctctctccccagcagtGgtggaagtgactggccacgc	12	16	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	16	4715104	4715104	G	T	SNP	MGRN1	ENST00000590790	human	ensembl	69_37n	1	novel	missense	c.523	p.G175C	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGRN1	HGNC	ENSG00000102858	21	0	0	17	9	34.62	-	-	-	T	4715104	G	T	4715104	3	4	912	1	0	0	0	0	1	0	0	0	9630	1362	47	4	659	4	MGRN1	16	4715104	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		4715104	85639649	49	73750										
KIFC3	0	genome.wustl.edu	37	chr16	57828979	57828979	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cacgctaagggctcggcactGagctagggctgggcgagctg	17	11	0	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	16	57828979	57828979	G	A	SNP	KIFC3	ENST00000379655	human	ensembl	69_37n	-1	known	nonsense	c.247	p.Q83*	0.989	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859	8	0	0	15	7	30.43	-	-	-	A	57828979	G	A	57828979	4	1	912	1	0	0	0	0	0	1	0	0	8366	1299	45	2	2331	2	KIFC3	16	57828979	Nonsense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	53113875	57828979	32525774	50	73751										
KRBA2	0	genome.wustl.edu	37	chr17	8273116	8273116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tgaactcaccatcggcactgGactgcatgtcaagtatttca	8	11	3	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	8273116	8273116	G	A	SNP	KRBA2	ENST00000331336	human	ensembl	69_37n	-1	known	missense	c.815	p.S272F	0.985	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core	-	no_errors	KRBA2	HGNC	ENSG00000184619	12	0	0	6	9	60	-	-	-	A	8273116	G	A	8273116	3	1	912	1	0	0	0	0	1	0	0	0	8493	1174	41	2	667	2	KRBA2	17	8273116	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		8273116	72922094	51	73752										
KSR1	0	genome.wustl.edu	37	chr17	25937188	25937188	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cgggaaggacgaggatcagcTgccattctccaaagctgctg	13	11	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	25937188	25937188	T	G	SNP	KSR1	ENST00000319524	human	ensembl	69_37n	1	known	missense	c.2387	p.L796R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068	27	0	0	21	18	46.15	-	-	-	G	25937188	T	G	25937188	3	3	912	1	0	0	0	0	1	0	0	0	8635	1580	55	5	2034	5	KSR1	17	25937188	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	17664072	25937188	55258022	52	73753										
CDK12	0	genome.wustl.edu	37	chr17	37627547	37627547	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	taaagttggatgagaactccGagaagcatcttgttaaagat	10	5	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	37627547	37627547	G	T	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	nonsense	c.1462	p.E488*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	35	0	0	27	24	47.06	-	-	-	T	37627547	G	T	37627547	4	4	912	1	0	0	0	0	0	1	0	0	3157	1059	37	3	1468	3	CDK12	17	37627547	Nonsense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	11690359	37627547	43567663	53	73754										
ERBB2	0	genome.wustl.edu	37	chr17	37872089	37872089	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ggactggccctcatccaccaTaacacccacctctgcttcgt	6	18	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	37872089	37872089	T	G	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.1410	p.H470Q	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	28	0	0	16	24	60	-	-	-	G	37872089	T	G	37872089	3	3	912	1	0	0	0	0	1	0	0	0	5243	1403	49	5	1456	5	ERBB2	17	37872089	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	244542	37872089	43323121	54	73755										
CNTNAP1	0	genome.wustl.edu	37	chr17	40835917	40835917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ctactacagtctccttactgCgccgagattcgccaggctgc	9	15	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	40835917	40835917	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.146	p.A49V	0.004	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	15	0	0	12	11	47.83	-	-	-	T	40835917	C	T	40835917	3	4	912	1	0	0	0	0	1	0	0	0	3676	768	27	1	152	1	CNTNAP1	17	40835917	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	2963828	40835917	40359293	55	73756										
MKS1	0	genome.wustl.edu	37	chr17	56285904	56285904	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gacttggtggtgcaggtctgTgttactcctgagagctgctg	15	8	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	56285904	56285904	T	G	SNP	MKS1	ENST00000577824	human	ensembl	69_37n	-1	putative	missense	c.542	p.H181P	0.969	pfam_B9_dom	pfam_B9_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MKS1	HGNC	ENSG00000011143	39	0	0	55	9	14.06	-	-	-	G	56285904	T	G	56285904	3	3	912	1	0	0	0	0	1	0	0	0	9680	1683	59	5	642	5	MKS1	17	56285904	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09	15449987	56285904	24909306	56	73757										
BPTF	0	genome.wustl.edu	37	chr17	65925540	65925540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	tttacttcattccagcccagGacagcaacagtcacaattag	6	12	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	17	65925540	65925540	G	T	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.6465	p.R2155S	0.993	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	59	0	0	80	16	16.67	-	-	-	T	65925540	G	T	65925540	3	4	912	1	0	0	0	0	1	0	0	0	1503	1165	41	2	6539	2	BPTF	17	65925540	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	9639636	65925540	15269670	57	73758										
TYMS	0	genome.wustl.edu	37	chr18	670739	670739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	gccatgccctctgccagttcTatgtggtgaacagtgagctg	12	11	2	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	18	670739	670739	T	C	SNP	TYMS	ENST00000323274	human	ensembl	69_37n	1	known	missense	c.604	p.Y202H	1.000	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase,tigrfam_Thymidylate_synthase	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase,tigrfam_Thymidylate_synthase	-	no_errors	TYMS	HGNC	ENSG00000176890	32	0	0	27	12	30.77	-	-	-	C	670739	T	C	670739	3	2	912	1	0	0	0	0	1	0	0	0	16909	1522	53	5	622	5	TYMS	18	670739	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09		670739	77406509	58	73759										
METTL4	0	genome.wustl.edu	37	chr18	2567097	2567097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	actcaaagtgaacagaagtaGtgaactcctttttacggcaa	8	8	1	3			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	18	2567097	2567097	G	C	SNP	METTL4	ENST00000574538	human	ensembl	69_37n	-1	known	missense	c.119	p.T40S	0.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL4	HGNC	ENSG00000101574	28	0	0	18	11	37.93	-	-	-	C	2567097	G	C	2567097	3	2	912	1	0	0	0	0	1	0	0	0	9573	1029	36	4	1331	4	METTL4	18	2567097	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09	1896358	2567097	75510151	59	73760										
RANBP3	0	genome.wustl.edu	37	chr19	5918623	5918623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cagcttggtgttgaggatcaGtcgcaggctcccctgggtcc	14	12	1	1			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	19	5918623	5918623	G	A	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	silent	c.1357	p.L453	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	34	0	0	17	19	52.78	-	-	-	A	5918623	G	A	5918623	2	1	912	1	0	0	0	0	0	0	0	1	13112	1020	36	4		4	RANBP3	19	5918623	Silent	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		5918623	53210360	60	73761										
ZNF582	0	genome.wustl.edu	37	chr19	56896271	56896271	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	cttttctacatttattatacCcaaaaggtttttctctagta	3	8	2	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	19	56896271	56896271	C	G	SNP	ZNF582	ENST00000301310	human	ensembl	69_37n	-1	known	missense	c.515	p.G172A	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	45	0	0	58	11	15.94	-	-	-	G	56896271	C	G	56896271	3	3	912	1	0	0	0	0	1	0	0	0	18110	623	22	4	1042	4	ZNF582	19	56896271	Missense_Mutation	SNP	C	TCGA-EW-A1PD-01A-11D-A142-09	50977648	56896271	2232712	61	73762										
TRPM2	0	genome.wustl.edu	37	chr21	45843548	45843548	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	ggttgacgccatggtggaccTgctggacctggacccactga	14	12	0	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	21	45843548	45843548	T	G	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	missense	c.3482	p.L1161R	0.993	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	20	0	0	17	8	32	-	-	-	G	45843548	T	G	45843548	3	3	912	1	0	0	0	0	1	0	0	0	16682	1580	55	5	3572	5	TRPM2	21	45843548	Missense_Mutation	SNP	T	TCGA-EW-A1PD-01A-11D-A142-09		45843548	2286347	62	73763										
ZC3H7B	0	genome.wustl.edu	37	chr22	41752463	41752463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	agcagatccagatgcccacgGactacgcggacatcatggta	11	12	1	2			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	22	41752463	41752463	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.2500	p.D834N	0.999	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	25	0	0	12	14	53.85	-	-	-	A	41752463	G	A	41752463	3	1	912	1	0	0	0	0	1	0	0	0	17669	1174	41	2	2578	2	ZC3H7B	22	41752463	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		41752463	9552103	63	73764										
FAM9B	0	genome.wustl.edu	37	chrX	9000176	9000176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	10	0.112455236977887	1.93159922928709	2.67452200978213	1.51168635335511	1	1	0	actcctaaaacatacctgcaGtatcttctggcttcttggta	6	11	3	0			TCGA-EW-A1PD-01A-11D-A142-09	TCGA-EW-A1PD-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5a288561-bf14-4cb9-b2f5-9ece0e038319	8e2913c9-4903-4d07-a706-a42e19b2ed7a	X	9000176	9000176	G	T	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	missense	c.176	p.T59N	0.087	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	23	0	0	11	10	47.62	-	-	-	T	9000176	G	T	9000176	3	4	912	1	0	0	0	0	1	0	0	0	5706	1029	36	4	404	4	FAM9B	23	9000176	Missense_Mutation	SNP	G	TCGA-EW-A1PD-01A-11D-A142-09		9000176	146270384	64	73765										
AGBL4	0	genome.wustl.edu	37	chr1	50489468	50489468	+	Frame_Shift_Del	DEL	T	T	-													0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cgactggctcccctccgccaTttttgttgtccctcagtctc							TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	50489468	50489468	T	-	DEL	AGBL4	ENST00000371839	human	ensembl	69_37n	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094	29	0	0	16	2	11.11	-	-	-	-	50489468	T	-	50489468	7	5	913	1	0	1	0	1	0	0	0	0	377	1493	52	0	1566	0	AGBL4	1	50489468	Frame_Shift_Del	DEL	T	TCGA-EW-A1PE-01A-11D-A142-09		50489468	198761153	1	73766										
STX6	0	genome.wustl.edu	37	chr1	180971828	180971828	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	aaattttctaggatttgcttCaactatgcgtaggtcaaaaa	7	6	3	0			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	180971828	180971828	C	T	SNP	STX6	ENST00000258301	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Syntaxin-6_N,superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823	76	0	0	56	25	30.86	-	-	-	T	180971828	C	T	180971828	3	4	913	1	0	0	0	0	1	0	0	0	15440	835	29	2	577	2	STX6	1	180971828	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	130482360	180971828	68278793	2	73767										
FAHD2B	0	genome.wustl.edu	37	chr2	97748462	97748462	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	tgtgcggacccaaagcttgcCatcagtgctatctggacctt	10	12	2	0			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	97748462	97748462	C	T	SNP	FAHD2B	ENST00000443258	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.126	-	-	-	no_errors	FAHD2B	HGNC	ENSG00000144199	42	0	0	15	7	31.82	-	-	-	T	97748462	C	T	97748462	1	4	913	0	1	0	0	0	0	0	0	0	5414	609	21	4		4	FAHD2B	2	97748462	RNA	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09		97748462	145450911	3	73768										
ARHGEF4	0	genome.wustl.edu	37	chr2	131785560	131785560	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cacagctgtctgcgctgacgAagtggggagcgaggaggacc	17	10	1	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	131785560	131785560	A	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	1	known	missense	c.470	p.E157V	0.994	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	28	0	0	16	4	20	-	-	-	T	131785560	A	T	131785560	3	4	913	1	0	0	0	0	1	0	0	0	910	246	9	5	480	5	ARHGEF4	2	131785560	Missense_Mutation	SNP	A	TCGA-EW-A1PE-01A-11D-A142-09	34037098	131785560	111413813	4	73769										
SNED1	0	genome.wustl.edu	37	chr2	241989250	241989250	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	ccagccctgccatcaccctgCgactcggacccctgcttcaa	7	20	2	0			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	241989250	241989250	C	T	SNP	SNED1	ENST00000401644	human	ensembl	69_37n	1	novel	nonsense	c.724	p.R242*	0.960	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon	SNED1	HGNC	ENSG00000162804	55	0	0	26	4	13.33	-	-	-	T	241989250	C	T	241989250	4	4	913	1	0	0	0	0	0	1	0	0	14934	776	27	1	1681	1	SNED1	2	241989250	Nonsense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	110203690	241989250	1210123	5	73770										
OR5H1	0	genome.wustl.edu	37	chr3	97851916	97851916	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gcatatgatcgctatgtagcCatatgcaaacctttacttta	6	9	0	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	97851916	97851916	C	T	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	1	known	silent	c.375	p.A125	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	50	0	0	15	18	54.55	-	-	-	T	97851916	C	T	97851916	2	4	913	1	0	0	0	0	0	0	0	1	11232	581	21	4		4	OR5H1	3	97851916	Silent	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09		97851916	100170514	6	73771										
PIK3CA	0	genome.wustl.edu	37	chr3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	ctctctctgaaatcactgagCaggagaaagattttctatgg	9	8	4	4			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0	25	15	37.5	-	-	-	A	178936094	C	A	178936094	3	1	913	1	0	0	0	0	1	0	0	0	11987	711	25	4	1670	4	PIK3CA	3	178936094	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	81084178	178936094	19086336	7	73772										
PIK3CA	0	genome.wustl.edu	37	chr3	178952018	178952018	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	acattgcatacattcgaaagAccctagccttagataaaact	5	10	0	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178952018	178952018	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3073	p.T1025A	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	26	15	36.59	-	-	-	G	178952018	A	G	178952018	3	3	913	1	0	0	0	0	1	0	0	0	11987	275	10	5	3151	5	PIK3CA	3	178952018	Missense_Mutation	SNP	A	TCGA-EW-A1PE-01A-11D-A142-09	15924	178952018	19070412	8	73773										
MUC4	0	genome.wustl.edu	37	chr3	195510372	195510372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cctgtggatgctgaggaagtGtcggtgacaggaagagaggt	18	5	0	3			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	195510372	195510372	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.8079	p.D2693E	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	27	0	0	15	4	20	-	-	-	C	195510372	G	C	195510372	3	2	913	1	0	0	0	0	1	0	0	0	10050	1368	48	4		4	MUC4	3	195510372	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09	16558354	195510372	2512058	9	73774										
FBXW7	0	genome.wustl.edu	37	chr4	153251936	153251936	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	tagtatcaattctgtgctgtCtgatgtatgcacttttccat	7	8	3	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	153251936	153251936	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1070	p.R357K	1.000	superfamily_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	137	0	0	67	37	35.58	-	-	-	T	153251936	C	T	153251936	3	4	913	1	0	0	0	0	1	0	0	0	5815	913	32	2	1077	2	FBXW7	4	153251936	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09		153251936	37902340	10	73775										
ADAM29	0	genome.wustl.edu	37	chr4	175896768	175896768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cccccaatatcacagccctcCggatgtggtgattcctgtga	9	14	1	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	175896768	175896768	C	T	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	1	known	missense	c.92	p.P31L	0.075	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	28	0	0	14	14	50	-	-	-	T	175896768	C	T	175896768	3	4	913	1	0	0	0	0	1	0	0	0	247	652	23	1	94	1	ADAM29	4	175896768	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	22644832	175896768	15257508	11	73776										
PTGER4	0	genome.wustl.edu	37	chr5	40692393	40692393	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gtggatgaggctggtgggagCggcagggctgggcctgcccc	21	10	0	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	40692393	40692393	C	T	SNP	PTGER4	ENST00000302472	human	ensembl	69_37n	1	known	silent	c.1380	p.S460	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522	21	0	0	11	10	47.62	-	-	-	T	40692393	C	T	40692393	2	4	913	1	0	0	0	0	0	0	0	1	12826	767	27	1		1	PTGER4	5	40692393	Silent	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09		40692393	140222867	12	73777										
RASGRF2	0	genome.wustl.edu	37	chr5	80338748	80338748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	tcagaagccactggagctgcGctgtgaggaggagcaggatg	17	8	1	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	80338748	80338748	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	missense	c.341	p.R114H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	80	0	0	39	22	36.07	-	-	-	A	80338748	G	A	80338748	3	1	913	1	0	0	0	0	1	0	0	0	13156	1087	38	1	347	1	RASGRF2	5	80338748	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09	39646355	80338748	100576512	13	73778										
CEP120	0	genome.wustl.edu	37	chr5	122682280	122682282	+	In_Frame_Del	DEL	TCC	TCC	-													0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cgagttcacttattattcgaTcctcgtgattatacacaccc							TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	122682280	122682282	TCC	-	DEL	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	in_frame_del	c.2894_2892	p.E964in_frame_del	1.000:1.000:0.999	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	70	0	0	48	20	29.41	-	-	-	-	122682282	TCC	-	122682280	7	5	913	1	0	1	0	1	0	0	0	0	3275	1435	50	0	70	0	CEP120	5	122682280	In_Frame_Del	DEL	TCC	TCGA-EW-A1PE-01A-11D-A142-09	42343532	122682280	58232980	14	73779										
GABRG2	0	genome.wustl.edu	37	chr5	161576176	161576176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cccggaaatcgctccccaagGtctcctatgtcacagcgatg	9	15	2	0			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	161576176	161576176	G	T	SNP	GABRG2	ENST00000356592	human	ensembl	69_37n	1	known	missense	c.985	p.V329F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	127	0	0	78	32	29.09	-	-	-	T	161576176	G	T	161576176	3	4	913	1	0	0	0	0	1	0	0	0	6221	1261	44	4	1139	4	GABRG2	5	161576176	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09	38893896	161576176	19339084	15	73780										
HLA-DRB5	0	genome.wustl.edu	37	chr6	32489744	32489744	+	Frame_Shift_Del	DEL	G	G	-													0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gtctgcagtaggtgtccaccGcggcgcgcctgtcttccagg							TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	6	32489744	32489744	G	-	DEL	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	frame_shift_del	c.308	p.A103fs	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	9	0	0	4	2	33.33	-	-	-	-	32489744	G	-	32489744	7	5	913	1	0	1	0	1	0	0	0	0	7260	1087	38	0	512	0	HLA-DRB5	6	32489744	Frame_Shift_Del	DEL	G	TCGA-EW-A1PE-01A-11D-A142-09		32489744	138625323	16	73781										
CREB3	0	genome.wustl.edu	37	chr9	35733103	35733103	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cttgtccaccatgaccacacCtactccctcccacgggaaac	5	19	0	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	35733103	35733103	C	G	SNP	CREB3	ENST00000353704	human	ensembl	69_37n	1	known	silent	c.240	p.T80	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175	63	0	0	48	24	33.33	-	-	-	G	35733103	C	G	35733103	2	3	913	1	0	0	0	0	0	0	0	1	3885	668	24	4		4	CREB3	9	35733103	Silent	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09		35733103	105480328	17	73782										
PRKACG	0	genome.wustl.edu	37	chr9	71628862	71628862	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	ccgaaggagcccatgcccagCgtcctgagccgttcgaactg	12	15	0	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	71628862	71628862	C	A	SNP	PRKACG	ENST00000377276	human	ensembl	69_37n	-1	known	silent	c.147	p.T49	0.984	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	57	0	0	36	15	29.41	-	-	-	A	71628862	C	A	71628862	2	1	913	1	0	0	0	0	0	0	0	1	12580	755	27	3		3	PRKACG	9	71628862	Silent	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	35895759	71628862	69584569	18	73783										
CRAT	0	genome.wustl.edu	37	chr9	131859542	131859542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cacttacccggtcggtgtagCctcggtgggcctgcacggcc	14	15	0	0			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	131859542	131859542	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.1514	p.G505D	0.969	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	18	0	0	4	5	55.56	-	-	-	T	131859542	C	T	131859542	3	4	913	1	0	0	0	0	1	0	0	0	3877	739	26	4	378	4	CRAT	9	131859542	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	60230680	131859542	9353889	19	73784										
PHB2	0	genome.wustl.edu	37	chr12	7074852	7074852	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	ttcttggtgactaggctcatTtcttacccttgatgaggctg	10	9	3	3			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	12	7074852	7074852	T	G	SNP	PHB2	ENST00000399433	human	ensembl	69_37n	-1	known	missense	c.896	p.K299T	0.982	NULL	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021	55	0	0	24	14	36.84	-	-	-	G	7074852	T	G	7074852	3	3	913	1	0	0	0	0	1	0	0	0	11889	1841	64	5	7	5	PHB2	12	7074852	Missense_Mutation	SNP	T	TCGA-EW-A1PE-01A-11D-A142-09		7074852	126777043	20	73785										
BRCA2	0	genome.wustl.edu	37	chr13	32911964	32911964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	tcttaaagaccacttctgagGaatgcagagatgctgatctt	9	8	3	4			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32911964	32911964	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.3472	p.E1158Q	0.001	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	38	0	0	25	11	30.56	-	-	-	C	32911964	G	C	32911964	3	2	913	1	0	0	0	0	1	0	0	0	1507	1175	41	2	3510	2	BRCA2	13	32911964	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09		32911964	82257914	21	73786			1	120		2	2	102	G		9.787367e-05
BRCA2	0	genome.wustl.edu	37	chr13	32912065	32912065	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	acagttgaaattaaacggaaGtttgctggcctgttgaaaaa	10	5	0	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32912065	32912065	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	1	known	missense	c.3573	p.K1191N	0.000	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	39	0	0	25	8	24.24	-	-	-	C	32912065	G	C	32912065	3	2	913	1	0	0	0	0	1	0	0	0	1507	1020	36	4	3611	4	BRCA2	13	32912065	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09	101	32912065	82257813	22	73787			1	120		2	2	102	G		9.787367e-05
INTS6	0	genome.wustl.edu	37	chr13	52026554	52026554	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gctcggtcagtcggtaccttCatgaaggtctctaccgcgcc	11	14	3	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	52026554	52026554	C	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.108	p.M36I	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	26	0	0	10	6	37.5	-	-	-	T	52026554	C	T	52026554	3	4	913	1	0	0	0	0	1	0	0	0	7836	826	29	2	2636	2	INTS6	13	52026554	Missense_Mutation	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	19114489	52026554	63143324	23	73788										
SGSM2	0	genome.wustl.edu	37	chr17	2265513	2265513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cgtatgggtacgcacggcgcTcatcgagaaagttctggaca	13	10	2	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	2265513	2265513	T	C	SNP	SGSM2	ENST00000268989	human	ensembl	69_37n	1	known	missense	c.407	p.L136P	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	28	0	0	8	8	50	-	-	-	C	2265513	T	C	2265513	3	2	913	1	0	0	0	0	1	0	0	0	14311	1551	54	5	421	5	SGSM2	17	2265513	Missense_Mutation	SNP	T	TCGA-EW-A1PE-01A-11D-A142-09		2265513	78929697	24	73789										
DNAH9	0	genome.wustl.edu	37	chr17	11772531	11772531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	ctcaaatgtcagcaagaagcCgaagtgaccgcagtcaccat	9	12	3	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	11772531	11772531	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	silent	c.10014	p.A3338	0.404	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	31	0	0	18	8	30.77	-	-	-	T	11772531	C	T	11772531	2	4	913	1	0	0	0	0	0	0	0	1	4643	639	23	1		1	DNAH9	17	11772531	Silent	SNP	C	TCGA-EW-A1PE-01A-11D-A142-09	9507018	11772531	69422679	25	73790										
MAP2K4	0	genome.wustl.edu	37	chr17	12016647	12016648	+	Frame_Shift_Del	DEL	AA	AA	-													0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gtggactctattgccaagacAagagatgctggctgtaggcc							TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	12016647	12016648	AA	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	1	known	frame_shift_del	c.816_817	p.D274fs	0.986:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	33	0	0	8	9	50	-	-	-	-	12016648	AA	-	12016647	7	5	913	1	0	1	0	1	0	0	0	0	9310	117	5	0	809	0	MAP2K4	17	12016647	Frame_Shift_Del	DEL	AA	TCGA-EW-A1PE-01A-11D-A142-09	244116	12016647	69178563	26	73791										
TAOK1	0	genome.wustl.edu	37	chr17	27804712	27804712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	attgtttaggatctgcttcgGatttactagaaggtaagttc	10	5	1	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	27804712	27804712	G	T	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	1	known	missense	c.340	p.D114Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	39	0	0	35	4	10.26	-	-	-	T	27804712	G	T	27804712	3	4	913	1	0	0	0	0	1	0	0	0	15639	1174	41	2	354	2	TAOK1	17	27804712	Missense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09	15788065	27804712	53390498	27	73792										
RASIP1	0	genome.wustl.edu	37	chr19	49227977	49227977	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	tcccagccaaccttcacctcGttccatcagcgagttgagaa	7	15	2	1			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	19	49227977	49227977	G	A	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	nonsense	c.2368	p.R790*	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538	41	0	0	13	12	46.15	-	-	-	A	49227977	G	A	49227977	4	1	913	1	0	0	0	0	0	1	0	0	13161	1153	40	1	539	1	RASIP1	19	49227977	Nonsense_Mutation	SNP	G	TCGA-EW-A1PE-01A-11D-A142-09		49227977	9901006	28	73793										
CDH26	0	genome.wustl.edu	37	chr20	58559737	58559737	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	gcagtcgatttggatgaagaAaacactccaaattctcaagt	8	8	1	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	20	58559737	58559737	A	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	silent	c.585	p.E195	0.048	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	57	0	0	29	20	40.82	-	-	-	G	58559737	A	G	58559737	2	3	913	1	0	0	0	0	0	0	0	1	3139	11	1	5		5	CDH26	20	58559737	Silent	SNP	A	TCGA-EW-A1PE-01A-11D-A142-09		58559737	4465783	29	73794										
TNRC6B	0	genome.wustl.edu	37	chr22	40661715	40661715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	3	0.726156158600314	1.359375	0	1.8125	0.1	0.5224358974359	0	cccccaggactctaatgacaAcaaatggggtgaagggaaca	11	10	1	2			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	22	40661715	40661715	A	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.1481	p.N494S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	31	0	0	13	10	43.48	-	-	-	G	40661715	A	G	40661715	3	3	913	1	0	0	0	0	1	0	0	0	16436	43	2	5	1620	5	TNRC6B	22	40661715	Missense_Mutation	SNP	A	TCGA-EW-A1PE-01A-11D-A142-09		40661715	10642851	30	73795										
CADM3	0	genome.wustl.edu	37	chr1	159163753	159163753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	tacccgggaggatgatggggCgagcatcgtgtgctctgtga	17	8	1	2			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	1	159163753	159163753	C	T	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	1	known	missense	c.716	p.A239V	0.488	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	57	0	0	26	7	21.21	-	-	-	T	159163753	C	T	159163753	3	4	914	1	0	0	0	0	1	0	0	0	2593	768	27	1	738	1	CADM3	1	159163753	Missense_Mutation	SNP	C	TCGA-EW-A1PG-01A-11D-A142-09		159163753	90086868	1	73796										
NEUROD1	0	genome.wustl.edu	37	chr2	182542799	182542799	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	tcaaaggaagggctggtgcaAtcagtcagagggctttcaaa	13	7	4	1			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	2	182542799	182542799	A	T	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	missense	c.789	p.D263E	0.436	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	43	0	0	27	7	20.59	-	-	-	T	182542799	A	T	182542799	3	4	914	1	0	0	0	0	1	0	0	0	10420	98	4	5	285	5	NEUROD1	2	182542799	Missense_Mutation	SNP	A	TCGA-EW-A1PG-01A-11D-A142-09		182542799	60656574	2	73797										
KLF7	0	genome.wustl.edu	37	chr2	207988824	207988824	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	caggggacgatgggggcgttAatgaggtcactgcgttgagc	18	7	1	2			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	2	207988824	207988824	A	T	SNP	KLF7	ENST00000309446	human	ensembl	69_37n	-1	known	nonsense	c.407	p.L136*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	66	0	0	43	5	10.42	-	-	-	T	207988824	A	T	207988824	4	4	914	1	0	0	0	0	0	1	0	0	8404	372	13	5	513	5	KLF7	2	207988824	Nonsense_Mutation	SNP	A	TCGA-EW-A1PG-01A-11D-A142-09	25446025	207988824	35210549	3	73798										
FRAS1	0	genome.wustl.edu	37	chr4	79462038	79462038	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	aacaggaaatgccagaaacaGaggaagaagaagcccgcaga	12	8	0	5			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	4	79462038	79462038	G	A	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	missense	c.6484	p.E2162K	0.045	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	51	0	0	38	6	13.64	-	-	-	A	79462038	G	A	79462038	3	1	914	1	0	0	0	0	1	0	0	0	6090	933	33	2	12168	2	FRAS1	4	79462038	Missense_Mutation	SNP	G	TCGA-EW-A1PG-01A-11D-A142-09		79462038	111692238	4	73799										
CDH26	0	genome.wustl.edu	37	chr20	58559787	58559787	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	cctcatttctcaaacaccatTactgaaagaaagtggtttcc	5	11	2	2			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	20	58559787	58559787	T	A	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	nonsense	c.635	p.L212*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	115	0	0	84	10	10.64	-	-	-	A	58559787	T	A	58559787	4	1	914	1	0	0	0	0	0	1	0	0	3139	1764	61	5	657	5	CDH26	20	58559787	Nonsense_Mutation	SNP	T	TCGA-EW-A1PG-01A-11D-A142-09		58559787	4465733	5	73800										
IL10RB	0	genome.wustl.edu	37	chr21	34668541	34668541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	1	0.827988076446844	1.7536231884058	NA	1.7536231884058	1	1	0	gtttttctcctttccattgtCggatgagaatgatgtttttg	9	6	1	2			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	21	34668541	34668541	C	T	SNP	IL10RB	ENST00000290200	human	ensembl	69_37n	1	known	missense	c.857	p.S286L	0.001	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646	104	0	0	82	11	11.83	-	-	-	T	34668541	C	T	34668541	3	4	914	1	0	0	0	0	1	0	0	0	7675	893	31	1	883	1	IL10RB	21	34668541	Missense_Mutation	SNP	C	TCGA-EW-A1PG-01A-11D-A142-09		34668541	13461354	6	73801										
VPS13D	0	genome.wustl.edu	37	chr1	12368636	12368636	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tcctattttgtgcgacagacAggaggaagcctcttaaccga	10	10	1	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	12368636	12368636	A	T	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	1	novel	missense	c.3056	p.Q1019L	0.988	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	47	0	0	56	27	32.53	-	-	-	T	12368636	A	T	12368636	3	4	915	1	0	0	0	0	1	0	0	0	17289	175	7	5	6690	5	VPS13D	1	12368636	Missense_Mutation	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09		12368636	236881985	1	73802										
HOOK1	0	genome.wustl.edu	37	chr1	60306040	60306040	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	aaaaagaagagctgaggcaaAgatgtgaagaattggatatg	13	2	0	6			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	60306040	60306040	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	1	known	missense	c.598	p.R200G	0.473	pfam_HOOK,superfamily_Prefoldin	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	62	0	0	74	12	13.95	-	-	-	G	60306040	A	G	60306040	3	3	915	1	0	0	0	0	1	0	0	0	7333	64	3	5	628	5	HOOK1	1	60306040	Missense_Mutation	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09	47937404	60306040	188944581	2	73803										
AMPD1	0	genome.wustl.edu	37	chr1	115217393	115217393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	cttttttaaatttaggccatGagagatatcatctgctatca	6	7	3	2			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	115217393	115217393	G	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.1879	p.H627D	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	33	0	0	59	23	28.05	-	-	-	C	115217393	G	C	115217393	3	2	915	1	0	0	0	0	1	0	0	0	585	1290	45	2	479	2	AMPD1	1	115217393	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	54911353	115217393	134033228	3	73804										
PRUNE	0	genome.wustl.edu	37	chr1	150998051	150998051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tggaaaggcaaccccaaaggAcagcaaatatgtggagaaac	11	8	0	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	150998051	150998051	A	G	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	1	known	missense	c.581	p.D194G	0.998	NULL	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	69	0	0	140	25	15.15	-	-	-	G	150998051	A	G	150998051	3	3	915	1	0	0	0	0	1	0	0	0	12720	275	10	5	599	5	PRUNE	1	150998051	Missense_Mutation	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09	35780658	150998051	98252570	4	73805										
LAMC1	0	genome.wustl.edu	37	chr1	183093958	183093960	+	In_Frame_Del	DEL	AAG	AAG	-													0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	cttctattgtgaccggtgcaAagacggattttttggaaatc							TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	183093958	183093960	AAG	-	DEL	LAMC1	ENST00000258341	human	ensembl	69_37n	1	known	in_frame_del	c.2594_2596	p.KD865in_frame_delN	1.000:0.998:0.999	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	52	0	0	104	22	17.05	-	-	-	-	183093960	AAG	-	183093958	7	5	915	1	0	1	0	1	0	0	0	0	8668	14	1	0	2648	0	LAMC1	1	183093958	In_Frame_Del	DEL	AAG	TCGA-EW-A1PH-01A-11D-A14K-09	32095907	183093958	66156663	5	73806										
PROX1	0	genome.wustl.edu	37	chr1	214184963	214184963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	acgcacgtcaagccatcaacGatggggtcaccagtactgaa	10	12	3	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	214184963	214184963	G	A	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	1	known	missense	c.1933	p.D645N	1.000	pfam_Prox1,superfamily_Homeodomain-like	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	56	0	0	95	43	30.94	-	-	-	A	214184963	G	A	214184963	3	1	915	1	0	0	0	0	1	0	0	0	12641	1058	37	1	1943	1	PROX1	1	214184963	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	31091005	214184963	35065658	6	73807										
RYR2	0	genome.wustl.edu	37	chr1	237806646	237806646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gttgattcatgccgggaaggGagaagccatcagaattaggt	14	6	2	3			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	237806646	237806646	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.7235	p.G2412E	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	86	0	0	209	44	17.32	-	-	-	A	237806646	G	A	237806646	3	1	915	1	0	0	0	0	1	0	0	0	13855	1174	41	2	7431	2	RYR2	1	237806646	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	23621683	237806646	11443975	7	73808										
RDH14	0	genome.wustl.edu	37	chr2	18736520	18736520	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tttcttgcaacagattcatcCatagctttgggcaacagttc	7	10	2	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	18736520	18736520	C	G	SNP	RDH14	ENST00000381249	human	ensembl	69_37n	-1	known	missense	c.948	p.M316I	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH14	HGNC	ENSG00000240857	80	0	0	108	52	32.3	-	-	-	G	18736520	C	G	18736520	3	3	915	1	0	0	0	0	1	0	0	0	13276	594	21	4	66	4	RDH14	2	18736520	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09		18736520	224462853	8	73809										
LCT	0	genome.wustl.edu	37	chr2	136566347	136566347	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	atgaacctcttctcttcctcAgtgaagcttggcaggcggga	11	11	3	2			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	136566347	136566347	A	G	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	silent	c.3570	p.T1190	0.482	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	88	0	0	106	40	27.4	-	-	-	G	136566347	A	G	136566347	2	3	915	1	0	0	0	0	0	0	0	1	8747	175	7	5		5	LCT	2	136566347	Silent	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09	117829827	136566347	106633026	9	73810										
SCN7A	0	genome.wustl.edu	37	chr2	167284443	167284443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tttgaccaagtgaagatccgCgtctgcaacctgtcaagatt	9	10	2	4			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	167284443	167284443	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.2708	p.R903H	0.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	85	0	0	187	68	26.56	-	-	-	T	167284443	C	T	167284443	3	4	915	1	0	0	0	0	1	0	0	0	14011	768	27	1	2376	1	SCN7A	2	167284443	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09	30718096	167284443	75914930	10	73811										
LRP2	0	genome.wustl.edu	37	chr2	170134405	170134405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ggttgctgccatccatgaatGccctttccagcttaggttcc	9	13	0	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	170134405	170134405	G	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1622	p.A541E	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	53	0	0	135	31	18.67	-	-	-	T	170134405	G	T	170134405	3	4	915	1	0	0	0	0	1	0	0	0	9022	1319	46	4	12613	4	LRP2	2	170134405	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	2849962	170134405	73064968	11	73812										
KIAA1715	0	genome.wustl.edu	37	chr2	176802242	176802242	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	aacagtaggcacatcgaaaaGctgcagagaattttttaaaa	8	6	0	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	176802242	176802242	G	C	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	missense	c.977	p.A326G	1.000	pfam_DUF2296	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	22	0	0	19	17	47.22	-	-	-	C	176802242	G	C	176802242	3	2	915	1	0	0	0	0	1	0	0	0	8306	985	34	4	410	4	KIAA1715	2	176802242	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	6667837	176802242	66397131	12	73813										
SLC38A3	0	genome.wustl.edu	37	chr3	50252106	50252106	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tcgaggggaagacatcattcGggatgtcagtgttcaacctc	12	9	3	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	50252106	50252106	G	A	SNP	SLC38A3	ENST00000414604	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338	54	0	0	67	28	29.47	-	-	-	A	50252106	G	A	50252106	1	1	915	0	1	0	0	0	0	0	0	0	14694	1116	39	1		1	SLC38A3	3	50252106	RNA	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		50252106	147770324	13	73814										
DNAJC13	0	genome.wustl.edu	37	chr3	132224254	132224254	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	cccaacaagaaaacatgattAaaaaagtatgttattgtttt	5	5	0	2			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	132224254	132224254	A	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	1	known	nonsense	c.4993	p.K1665*	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	16	0	0	16	17	51.52	-	-	-	T	132224254	A	T	132224254	4	4	915	1	0	0	0	0	0	1	0	0	4667	363	13	5	5155	5	DNAJC13	3	132224254	Nonsense_Mutation	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09	81972148	132224254	65798176	14	73815										
RFC1	0	genome.wustl.edu	37	chr4	39301747	39301747	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ttaaaagcatcaggtgctttTtcatgtcacccctgcaggaa	8	10	3	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	39301747	39301747	T	C	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.2705	p.K902R	1.000	superfamily_DNA_pol3_clamp-load_cplx_C,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	59	0	0	43	45	51.14	-	-	-	C	39301747	T	C	39301747	3	2	915	1	0	0	0	0	1	0	0	0	13327	1841	64	5	761	5	RFC1	4	39301747	Missense_Mutation	SNP	T	TCGA-EW-A1PH-01A-11D-A14K-09		39301747	151852529	15	73816										
SYNPO2	0	genome.wustl.edu	37	chr4	119952720	119952720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gcctataatcctatccactcGccgtcttacccactggctgc	6	17	1	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	119952720	119952720	G	A	SNP	SYNPO2	ENST00000504178	human	ensembl	69_37n	1	novel	missense	c.2644	p.A882T	0.402	NULL	superfamily_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYNPO2	HGNC	ENSG00000172403	37	0	0	37	13	25.49	-	-	-	A	119952720	G	A	119952720	3	1	915	1	0	0	0	0	1	0	0	0	15549	1074	38	1	2804	1	SYNPO2	4	119952720	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	80650973	119952720	71201556	16	73817										
PDZD2	0	genome.wustl.edu	37	chr5	32090922	32090922	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ggaattcccaccccaacgatGaccctggcttctcctgttaa	7	15	1	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	32090922	32090922	G	C	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	missense	c.7368	p.M2456I	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	38	0	0	27	11	28.95	-	-	-	C	32090922	G	C	32090922	3	2	915	1	0	0	0	0	1	0	0	0	11774	1290	45	2	7442	2	PDZD2	5	32090922	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		32090922	148824338	17	73818										
CD14	0	genome.wustl.edu	37	chr5	140012442	140012442	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gaaggcttcggaccagtcggGctgaggttcggagaagttgc	17	8	0	2			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	140012442	140012442	G	T	SNP	CD14	ENST00000302014	human	ensembl	69_37n	-1	known	missense	c.127	p.P43T	0.965	pirsf_Monocyte_diff_Ag_CD14	pfam_Leu-rich_rpt,pirsf_Monocyte_diff_Ag_CD14	-	no_errors	CD14	HGNC	ENSG00000170458	31	0	0	17	4	19.05	-	-	-	T	140012442	G	T	140012442	3	4	915	1	0	0	0	0	1	0	0	0	2993	1203	42	4	1004	4	CD14	5	140012442	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	107921520	140012442	40902818	18	73819										
ZBTB9	0	genome.wustl.edu	37	chr6	33424124	33424124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gccttttggctgtggcatctGcaacaagcgcttcaagctga	11	11	2	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	6	33424124	33424124	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	1	known	missense	c.1247	p.C416Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	23	0	0	39	9	18.75	-	-	-	A	33424124	G	A	33424124	3	1	915	1	0	0	0	0	1	0	0	0	17654	1319	46	4	1249	4	ZBTB9	6	33424124	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		33424124	137690943	19	73820										
ABCB5	0	genome.wustl.edu	37	chr7	20687685	20687685	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tgtttctttcaattatccatCaagaccatctatcaaggtag	5	9	5	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	7	20687685	20687685	C	T	SNP	ABCB5	ENST00000404938	human	ensembl	69_37n	1	putative	missense	c.1190	p.S397L	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	31	0	0	33	16	32.65	-	-	-	T	20687685	C	T	20687685	3	4	915	1	0	0	0	0	1	0	0	0	44	838	29	2	1228	2	ABCB5	7	20687685	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09		20687685	138450978	20	73821										
PXDNL	0	genome.wustl.edu	37	chr8	52321996	52321996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gttgttgcacgtgccgtcgtGggcgcggtacttcgcatgga	16	10	0	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	52321996	52321996	G	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.2188	p.H730N	0.786	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	14	0	0	26	15	36.59	-	-	-	T	52321996	G	T	52321996	3	4	915	1	0	0	0	0	1	0	0	0	12931	1348	47	4	2231	4	PXDNL	8	52321996	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		52321996	94042026	21	73822										
KIAA1429	0	genome.wustl.edu	37	chr8	95500959	95500959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gtgtaaaggagcgtacatgaCgacctctaccactgcctcca	9	13	1	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	95500959	95500959	C	T	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.5414	p.R1805H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	125	0	0	350	64	15.46	-	-	-	T	95500959	C	T	95500959	3	4	915	1	0	0	0	0	1	0	0	0	8283	536	19	1	28	1	KIAA1429	8	95500959	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09	43178963	95500959	50863063	22	73823										
SYBU	0	genome.wustl.edu	37	chr8	110655166	110655166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gcactctgtgctccttctcaAaattggacatcaaaaaagaa	6	10	3	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	110655166	110655166	A	G	SNP	SYBU	ENST00000399066	human	ensembl	69_37n	-1	known	missense	c.11	p.F4S	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	34	0	0	122	34	21.79	-	-	-	G	110655166	A	G	110655166	3	3	915	1	0	0	0	0	1	0	0	0	15518	14	1	5	1995	5	SYBU	8	110655166	Missense_Mutation	SNP	A	TCGA-EW-A1PH-01A-11D-A14K-09	15154207	110655166	35708856	23	73824										
KIAA0020	0	genome.wustl.edu	37	chr9	2812275	2812275	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	aatgatttctcgtactgtatGtgcaggatctctggggctta	11	7	2	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	2812275	2812275	G	C	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.1357	p.H453D	0.999	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	149	0	0	245	69	21.97	-	-	-	C	2812275	G	C	2812275	3	2	915	1	0	0	0	0	1	0	0	0	8204	1377	48	4	609	4	KIAA0020	9	2812275	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		2812275	138401156	24	73825										
LINGO2	0	genome.wustl.edu	37	chr9	27949218	27949218	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ttcccagcagcattgctagcGatgcaaacatacatcccgct	7	14	0	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	27949218	27949218	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	silent	c.1452	p.I484	0.202	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	64	0	0	92	26	21.85	-	-	-	A	27949218	G	A	27949218	2	1	915	1	0	0	0	0	0	0	0	1	8871	1048	37	1		1	LINGO2	9	27949218	Silent	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	25136943	27949218	113264213	25	73826										
COL5A1	0	genome.wustl.edu	37	chr9	137623972	137623972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	agaaccagcgattatcgagcCggtgaggacattttctcatt	10	9	1	2			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	137623972	137623972	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	1	known	missense	c.1388	p.P463L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	72	0	0	68	35	33.98	-	-	-	T	137623972	C	T	137623972	3	4	915	1	0	0	0	0	1	0	0	0	3726	666	23	1	1422	1	COL5A1	9	137623972	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09	109674754	137623972	3589459	26	73827										
PCDH15	0	genome.wustl.edu	37	chr10	55582871	55582871	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tctctgtgaaatgtctgaatTtgttgatacttgacttatgt	8	5	2	4			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	10	55582871	55582871	T	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.4615	p.N1539Y	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	17	0	0	25	10	28.57	-	-	-	A	55582871	T	A	55582871	3	1	915	1	0	0	0	0	1	0	0	0	11584	1841	64	5	2862	5	PCDH15	10	55582871	Missense_Mutation	SNP	T	TCGA-EW-A1PH-01A-11D-A14K-09		55582871	79951876	27	73828										
ARFIP2	0	genome.wustl.edu	37	chr11	6499366	6499366	+	Nonstop_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	acaaagaagttcacggctccTagcagcgtttccccattctt	7	13	2	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	11	6499366	6499366	T	C	SNP	ARFIP2	ENST00000531037	human	ensembl	69_37n	-1	known	nonstop	c.479	p.*160W	0.911	NULL	pfam_Arfaptin_homology_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254	101	0	0	165	37	18.32	-	-	-	C	6499366	T	C	6499366	4	2	915	1	0	0	0	0	0	0	0	0	857	1509	53	5	437	5	ARFIP2	11	6499366	Nonstop_Mutation	SNP	T	TCGA-EW-A1PH-01A-11D-A14K-09		6499366	128507150	28	73829										
DBX2	0	genome.wustl.edu	37	chr12	45444331	45444331	+	Frame_Shift_Del	DEL	C	C	-													0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gcgctgaaggctggaaggtaCagtctcggtcccccggagcc							TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	45444331	45444331	C	-	DEL	DBX2	ENST00000332700	human	ensembl	69_37n	-1	known	frame_shift_del	c.380	p.C127fs	0.451	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	12	0	0	4	3	37.5	-	-	-	-	45444331	C	-	45444331	7	5	915	1	0	1	0	1	0	0	0	0	4292	478	17	0	655	0	DBX2	12	45444331	Frame_Shift_Del	DEL	C	TCGA-EW-A1PH-01A-11D-A14K-09		45444331	88407564	29	73830										
KRT7	0	genome.wustl.edu	37	chr12	52636898	52636898	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ccatccagaggctgcaggctGagatcgacaacatcaagaac	10	12	1	3			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	52636898	52636898	G	C	SNP	KRT7	ENST00000331817	human	ensembl	69_37n	1	known	missense	c.961	p.E321Q	1.000	pfam_F,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II	pfam_F,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II,prints_Keratin_II	-	no_errors	KRT7	HGNC	ENSG00000135480	34	0	0	32	18	36	-	-	-	C	52636898	G	C	52636898	3	2	915	1	0	0	0	0	1	0	0	0	8536	1291	45	2	983	2	KRT7	12	52636898	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	7192567	52636898	81214997	30	73831										
LGR5	0	genome.wustl.edu	37	chr12	71833917	71833917	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	cctgtgctgctgcagctggcGaccgggggcagctctcccag	15	15	1	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	71833917	71833917	G	A	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	silent	c.57	p.A19	0.981	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	25	0	0	11	5	31.25	-	-	-	A	71833917	G	A	71833917	2	1	915	1	0	0	0	0	0	0	0	1	8812	1045	37	1		1	LGR5	12	71833917	Silent	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	19197019	71833917	62017978	31	73832										
AP1G2	0	genome.wustl.edu	37	chr14	24032994	24032994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gagggcaggactccagaaagGcctgcagctcttgcatcatg	13	11	2	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	14	24032994	24032994	G	T	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.1163	p.A388D	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	24	0	0	61	15	19.74	-	-	-	T	24032994	G	T	24032994	3	4	915	1	0	0	0	0	1	0	0	0	734	1203	42	4	1238	4	AP1G2	14	24032994	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		24032994	83316546	32	73833										
LPCAT4	0	genome.wustl.edu	37	chr15	34655637	34655637	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	actcacactccaggacccctCcatgcccagctggtggtgtc	9	17	1	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	15	34655637	34655637	C	T	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	nonsense	c.732	p.W244*	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	54	0	0	69	25	26.6	-	-	-	T	34655637	C	T	34655637	4	4	915	1	0	0	0	0	0	1	0	0	8979	856	30	2	874	2	LPCAT4	15	34655637	Nonsense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09		34655637	67875755	33	73834										
MYLPF	0	genome.wustl.edu	37	chr16	30389183	30389183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tcgactacaaaaacatctgcTacgtcatcacgcacggcgac	7	14	3	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	16	30389183	30389183	T	C	SNP	MYLPF	ENST00000322861	human	ensembl	69_37n	1	known	missense	c.472	p.Y158H	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYLPF	HGNC	ENSG00000180209	17	0	0	12	12	50	-	-	-	C	30389183	T	C	30389183	3	2	915	1	0	0	0	0	1	0	0	0	10132	1522	53	5	498	5	MYLPF	16	30389183	Missense_Mutation	SNP	T	TCGA-EW-A1PH-01A-11D-A14K-09		30389183	59965570	34	73835										
TP53	0	genome.wustl.edu	37	chr17	7577061	7577064	+	Frame_Shift_Del	DEL	CTTT	CTTT	-													0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	cagctcgtggtgaggctcccCtttcttgcggagattctctt							TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	7577061	7577064	CTTT	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.877_874	p.K292fs	0.324:0.411:0.904:0.987	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	86	0	0	35	73	65.77	-	-	-	-	7577064	CTTT	-	7577061	7	5	915	1	0	1	0	1	0	0	0	0	16477	681	24	0	409	0	TP53	17	7577061	Frame_Shift_Del	DEL	CTTT	TCGA-EW-A1PH-01A-11D-A14K-09		7577061	73618149	35	73836										
DNAH9	0	genome.wustl.edu	37	chr17	11597227	11597227	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	tcgacattgactttaaagagCtagcttatgatgcccagaaa	8	8	0	4			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	11597227	11597227	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.4657	p.L1553V	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	68	0	0	163	41	20.1	-	-	-	G	11597227	C	G	11597227	3	3	915	1	0	0	0	0	1	0	0	0	4643	796	28	4	4739	4	DNAH9	17	11597227	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09	4020166	11597227	69597983	36	73837										
CEACAM4	0	genome.wustl.edu	37	chr19	42126986	42126986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	gcggctgctccctgaggtcaCgctggatgctggccctagga	15	13	1	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	42126986	42126986	C	T	SNP	CEACAM4	ENST00000221954	human	ensembl	69_37n	-1	known	missense	c.557	p.R186H	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	CEACAM4	HGNC	ENSG00000105352	24	0	0	18	4	18.18	-	-	-	T	42126986	C	T	42126986	3	4	915	1	0	0	0	0	1	0	0	0	3223	536	19	1	193	1	CEACAM4	19	42126986	Missense_Mutation	SNP	C	TCGA-EW-A1PH-01A-11D-A14K-09		42126986	17001997	37	73838										
DKKL1	0	genome.wustl.edu	37	chr19	49878066	49878066	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	catccccgggtggccttctgGatcattaagctgccacggcg	12	14	2	0			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	49878066	49878066	G	A	SNP	DKKL1	ENST00000221498	human	ensembl	69_37n	1	known	nonsense	c.510	p.W170*	1.000	NULL	NULL	-	no_errors	DKKL1	HGNC	ENSG00000104901	14	0	0	10	4	28.57	-	-	-	A	49878066	G	A	49878066	4	1	915	1	0	0	0	0	0	1	0	0	4584	1183	41	2	528	2	DKKL1	19	49878066	Nonsense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	7751080	49878066	9250917	38	73839										
USP29	0	genome.wustl.edu	37	chr19	57641241	57641241	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ccactttgaatactgggaaaGaatgtggggatgaaaattca	11	5	1	3			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	57641241	57641241	G	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	1	known	nonsense	c.1198	p.E400*	0.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	27	0	0	34	32	48.48	-	-	-	T	57641241	G	T	57641241	4	4	915	1	0	0	0	0	0	1	0	0	17156	943	33	2	1200	2	USP29	19	57641241	Nonsense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09	7763175	57641241	1487742	39	73840										
RALY	0	genome.wustl.edu	37	chr20	32664866	32664866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	agggtgatggaggtggcgccGgcggcggcggcggtggtggt	25	7	0	1			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	32664866	32664866	G	A	SNP	RALY	ENST00000246194	human	ensembl	69_37n	1	known	missense	c.691	p.G231S	0.001	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	8	0	0	9	5	35.71	-	-	-	A	32664866	G	A	32664866	3	1	915	1	0	0	0	0	1	0	0	0	13102	1116	39	1	713	1	RALY	20	32664866	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		32664866	30360654	40	73841										
MMP11	0	genome.wustl.edu	37	chr22	24124523	24124523	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	ctgccttggtctggggtcccGagaagaacaagatctacttc	11	11	2	3			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	22	24124523	24124523	G	A	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	1	known	missense	c.1186	p.E396K	0.984	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	37	0	0	14	5	26.32	-	-	-	A	24124523	G	A	24124523	3	1	915	1	0	0	0	0	1	0	0	0	9721	1059	37	1	1212	1	MMP11	22	24124523	Missense_Mutation	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		24124523	27180043	41	73842										
BCOR	0	genome.wustl.edu	37	chrX	39931968	39931968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0952380952380952	4	0.828805203053759	1.13247863247863	2.91208791208791	0.399698340874811	0.523809523809524	1	0	agaacactgtccttgcttacGgtgaagactggctgtttgaa	11	8	0	4			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	X	39931968	39931968	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	silent	c.2631	p.T877	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	70	0	0	15	44	74.58	-	-	-	A	39931968	G	A	39931968	2	1	915	1	0	0	0	0	0	0	0	1	1390	1103	39	1		1	BCOR	23	39931968	Silent	SNP	G	TCGA-EW-A1PH-01A-11D-A14K-09		39931968	115338592	42	73843										
DOCK7	0	genome.wustl.edu	37	chr1	62960016	62960016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tcaaatattcagcaacaagtGctgctgagtggactagacac	9	9	2	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	1	62960016	62960016	G	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.5120	p.A1707V	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	59	0	0	35	4	10.26	-	-	-	A	62960016	G	A	62960016	3	1	916	1	0	0	0	0	1	0	0	0	4727	1319	46	4	1319	4	DOCK7	1	62960016	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		62960016	186290605	1	73844										
DCLRE1B	0	genome.wustl.edu	37	chr1	114455907	114455907	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	acagacttgtggagctgggcGtctggatcaaaactgctttg	13	8	2	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	1	114455907	114455907	G	A	SNP	DCLRE1B	ENST00000466480	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DCLRE1B	HGNC	ENSG00000118655	33	0	0	26	8	23.53	-	-	-	A	114455907	G	A	114455907	1	1	916	0	1	0	0	0	0	0	0	0	4326	1160	40	1		1	DCLRE1B	1	114455907	RNA	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	51495891	114455907	134794714	2	73845										
DCLRE1B	0	genome.wustl.edu	37	chr1	114456169	114456169	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gactgcctaggctcgaatctGtggcaccctgagcaattact	10	12	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	1	114456169	114456169	G	A	SNP	DCLRE1B	ENST00000466480	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	DCLRE1B	HGNC	ENSG00000118655	92	0	0	57	7	10.94	-	-	-	A	114456169	G	A	114456169	1	1	916	0	1	0	0	0	0	0	0	0	4326	1392	48	4		4	DCLRE1B	1	114456169	RNA	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	262	114456169	134794452	3	73846										
IGSF9	0	genome.wustl.edu	37	chr1	159901653	159901653	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ccttgggcggagcaggggatGagcagctcccgccctacttc	14	14	0	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	1	159901653	159901653	G	A	SNP	IGSF9	ENST00000368094	human	ensembl	69_37n	-1	known	silent	c.1311	p.L437	0.991	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9	HGNC	ENSG00000085552	75	0	0	44	6	12	-	-	-	A	159901653	G	A	159901653	2	1	916	1	0	0	0	0	0	0	0	1	7659	1277	45	2		2	IGSF9	1	159901653	Silent	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	45445484	159901653	89348968	4	73847										
TTN	0	genome.wustl.edu	37	chr2	179482763	179482763	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atgtcagtgagacaccaaatCgattcacatcagtgatggtt	9	8	3	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	2	179482763	179482763	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.39611	p.R13204P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	58	0	0	53	11	17.19	-	-	-	G	179482763	C	G	179482763	3	3	916	1	0	0	0	0	1	0	0	0	16832	884	31	3	60818	3	TTN	2	179482763	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		179482763	63716610	5	73848										
SLMAP	0	genome.wustl.edu	37	chr3	57898911	57898911	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tagagaagttgagaaaggaaTggaatgcattggaaaccgaa	13	3	0	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	3	57898911	57898911	T	C	SNP	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	missense	c.1996	p.W666R	1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	46	0	0	26	16	38.1	-	-	-	C	57898911	T	C	57898911	3	2	916	1	0	0	0	0	1	0	0	0	14838	1464	51	5	2015	5	SLMAP	3	57898911	Missense_Mutation	SNP	T	TCGA-EW-A2FR-01A-11D-A21Q-09		57898911	140123519	6	73849										
NAALADL2	0	genome.wustl.edu	37	chr3	174814996	174814996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atacaaattgcccttcagatGctccatcttcaggaacagtt	6	11	3	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	3	174814996	174814996	G	T	SNP	NAALADL2	ENST00000454872	human	ensembl	69_37n	1	known	missense	c.460	p.A154S	0.016	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694	32	0	0	23	3	11.54	-	-	-	T	174814996	G	T	174814996	3	4	916	1	0	0	0	0	1	0	0	0	10202	1319	46	4	466	4	NAALADL2	3	174814996	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	116916085	174814996	23207434	7	73850										
ZFYVE28	0	genome.wustl.edu	37	chr4	2306739	2306739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gcaagctgatccccgccgctCcgcctggcccaccctgccct	9	22	0	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	4	2306739	2306739	C	T	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	missense	c.1328	p.G443E	0.026	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	90	0	0	62	8	11.43	-	-	-	T	2306739	C	T	2306739	3	4	916	1	0	0	0	0	1	0	0	0	17766	855	30	2	1359	2	ZFYVE28	4	2306739	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		2306739	188847537	8	73851										
NCAPG	0	genome.wustl.edu	37	chr4	17816953	17816953	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	attgctcagagagtaatgctCcttcaacaaggtcttaatga	8	8	3	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	4	17816953	17816953	C	T	SNP	NCAPG	ENST00000251496	human	ensembl	69_37n	1	known	silent	c.747	p.L249	0.570	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	68	0	0	38	11	22.45	-	-	-	T	17816953	C	T	17816953	2	4	916	1	0	0	0	0	0	0	0	1	10279	842	30	2		2	NCAPG	4	17816953	Silent	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	15510214	17816953	173337323	9	73852										
CMYA5	0	genome.wustl.edu	37	chr5	79027410	79027410	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atcagaagaagatcaagaagAcattggacctttttctccag	8	8	3	5			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	5	79027410	79027410	A	T	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	1	known	missense	c.2822	p.D941V	0.995	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	42	0	0	35	8	18.6	-	-	-	T	79027410	A	T	79027410	3	4	916	1	0	0	0	0	1	0	0	0	3620	275	10	5	2828	5	CMYA5	5	79027410	Missense_Mutation	SNP	A	TCGA-EW-A2FR-01A-11D-A21Q-09		79027410	101887850	10	73853										
C6orf118	0	genome.wustl.edu	37	chr6	165715422	165715422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	aggcctgggggttcaggtacCtgaacagcggggtgtcctgg	18	9	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	6	165715422	165715422	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.389	p.R130K	0.728	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	50	0	0	31	4	11.43	-	-	-	T	165715422	C	T	165715422	3	4	916	1	0	0	0	0	1	0	0	0	2344	681	24	4	1052	4	C6orf118	6	165715422	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		165715422	5399645	11	73854										
SNX13	0	genome.wustl.edu	37	chr7	17879459	17879459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	taaatactgttcataaattcCaacagcagctgctcttaaaa	4	9	2	0			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	7	17879459	17879459	C	T	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.1330	p.G444R	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	62	0	0	44	8	15.38	-	-	-	T	17879459	C	T	17879459	3	4	916	1	0	0	0	0	1	0	0	0	14973	603	21	4	1599	4	SNX13	7	17879459	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		17879459	141259204	12	73855										
ATP6V1B2	0	genome.wustl.edu	37	chr8	20061994	20061994	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ctcttctgtatttctttccaGcatacaagacagtatctgga	6	10	4	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	8	20061994	20061994	G	T	SNP	ATP6V1B2	ENST00000276390	human	ensembl	69_37n	1	known	splice_site	c.137-1	e2-1	1.000	-	-	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416	79	0	0	34	4	10.26	-	-	-	T	20061994	G	T	20061994	5	4	916	1	0	0	0	0	0	0	1	0	1183	985	34	4	142	4	ATP6V1B2	8	20061994	Splice_Site	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		20061994	126302028	13	73856										
RAB11FIP1	0	genome.wustl.edu	37	chr8	37730535	37730535	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atgggagatgagagagaggaGaagacagaaggactctcaga	16	4	1	7			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	8	37730535	37730535	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	69_37n	-1	known	silent	c.1785	p.F595	0.003	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675	82	0	0	89	58	39.19	-	-	-	A	37730535	G	A	37730535	2	1	916	1	0	0	0	0	0	0	0	1	12976	933	33	2		2	RAB11FIP1	8	37730535	Silent	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	17668541	37730535	108633487	14	73857										
RP1	0	genome.wustl.edu	37	chr8	55542413	55542413	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ccattggtgatatatttgatCagttttatttcagtaacaca	6	6	2	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	8	55542413	55542413	C	A	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.5971	p.Q1991K	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	35	0	0	20	3	13.04	-	-	-	A	55542413	C	A	55542413	3	1	916	1	0	0	0	0	1	0	0	0	13618	827	29	2	5981	2	RP1	8	55542413	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	17811878	55542413	90821609	15	73858										
ASPH	0	genome.wustl.edu	37	chr8	62588872	62588872	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tttcattactgccatctttgGtcaggcctacataagaataa	6	9	3	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	8	62588872	62588872	G	C	SNP	ASPH	ENST00000379449	human	ensembl	69_37n	-1	putative	missense	c.374	p.T125S	1.000	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	25	0	0	13	5	27.78	-	-	-	C	62588872	G	C	62588872	3	2	916	1	0	0	0	0	1	0	0	0	1057	1261	44	4	2702	4	ASPH	8	62588872	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	7046459	62588872	83775150	16	73859										
ZFHX4	0	genome.wustl.edu	37	chr8	77768240	77768240	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	catcagagatcacattttctCcaaacagcacatttcaaaag	4	11	4	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	8	77768240	77768240	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	missense	c.9083	p.S3028Y	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	37	0	0	29	4	12.12	-	-	-	A	77768240	C	A	77768240	3	1	916	1	0	0	0	0	1	0	0	0	17731	855	30	2	9117	2	ZFHX4	8	77768240	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	15179368	77768240	68595782	17	73860										
ZNF658	0	genome.wustl.edu	37	chr9	40772576	40772576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cccctgagcgagttctaagaTgtgctctgagatgtgatgtc	12	9	2	4			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	9	40772576	40772576	T	C	SNP	ZNF658	ENST00000377626	human	ensembl	69_37n	-1	known	missense	c.2699	p.H900R	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	169	0	0	86	22	20.37	-	-	-	C	40772576	T	C	40772576	3	2	916	1	0	0	0	0	1	0	0	0	18165	1464	51	5	484	5	ZNF658	9	40772576	Missense_Mutation	SNP	T	TCGA-EW-A2FR-01A-11D-A21Q-09		40772576	100440855	18	73861										
C9orf3	0	genome.wustl.edu	37	chr9	97522585	97522585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tggaaaaatttacaaggtctCctgagctcacggttgtttct	9	8	3	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	9	97522585	97522585	C	T	SNP	C9orf3	ENST00000375315	human	ensembl	69_37n	1	known	missense	c.520	p.P174S	0.938	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120	47	0	0	35	4	10.26	-	-	-	T	97522585	C	T	97522585	3	4	916	1	0	0	0	0	1	0	0	0	2502	855	30	2	522	2	C9orf3	9	97522585	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	56750009	97522585	43690846	19	73862										
HERC4	0	genome.wustl.edu	37	chr10	69834957	69834957	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cagtccagagacagccgtcaGcgacccggatggagcgggcg	16	13	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	10	69834957	69834957	G	A	SNP	HERC4	ENST00000395185	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634	72	0	0	41	6	12.77	-	-	-	A	69834957	G	A	69834957	1	1	916	0	1	0	0	0	0	0	0	0	7111	986	34	4		4	HERC4	10	69834957	RNA	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		69834957	65699790	20	73863										
CDH23	0	genome.wustl.edu	37	chr10	73537524	73537524	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	actatgaggtgctgctggatGagggcccagacacgctcaac	13	11	1	3			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	10	73537524	73537524	G	C	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	1	known	missense	c.4942	p.E1648Q	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	55	0	0	56	17	23.29	-	-	-	C	73537524	G	C	73537524	3	2	916	1	0	0	0	0	1	0	0	0	3137	1291	45	2	5428	2	CDH23	10	73537524	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	3702567	73537524	61997223	21	73864										
VWA2	0	genome.wustl.edu	37	chr10	116032589	116032589	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gcttctgtgccccagatcctCatcatcgtcactgatgggaa	9	13	4	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	10	116032589	116032589	C	T	SNP	VWA2	ENST00000392982	human	ensembl	69_37n	1	known	silent	c.462	p.L154	0.906	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816	80	0	0	46	11	19.3	-	-	-	T	116032589	C	T	116032589	2	4	916	1	0	0	0	0	0	0	0	1	17336	813	29	2		2	VWA2	10	116032589	Silent	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	42495065	116032589	19502158	22	73865										
CLRN3	0	genome.wustl.edu	37	chr10	129676427	129676427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gagaattcagaataaaattcCgtcccttggagcatattcca	7	9	1	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	10	129676427	129676427	C	T	SNP	CLRN3	ENST00000368671	human	ensembl	69_37n	-1	known	missense	c.667	p.G223R	0.991	NULL	NULL	-	no_errors	CLRN3	HGNC	ENSG00000180745	97	0	0	67	20	22.99	-	-	-	T	129676427	C	T	129676427	3	4	916	1	0	0	0	0	1	0	0	0	3589	661	23	1	17	1	CLRN3	10	129676427	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	13643838	129676427	5858320	23	73866										
CTSC	0	genome.wustl.edu	37	chr11	88033799	88033799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gctgtatttcagcagtcagtGgtgcaggtttgggcctagaa	14	7	2	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	11	88033799	88033799	G	A	SNP	CTSC	ENST00000227266	human	ensembl	69_37n	-1	known	missense	c.656	p.P219L	0.962	NULL	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861	30	0	0	45	5	10	-	-	-	A	88033799	G	A	88033799	3	1	916	1	0	0	0	0	1	0	0	0	4063	1348	47	4	747	4	CTSC	11	88033799	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		88033799	46972717	24	73867										
MMP13	0	genome.wustl.edu	37	chr11	102822837	102822837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	aaacatgagtgctccagggtCcttggagtggtcaagaccta	12	9	1	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	11	102822837	102822837	C	T	SNP	MMP13	ENST00000340273	human	ensembl	69_37n	-1	novel	missense	c.703	p.D235N	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP13	HGNC	ENSG00000137745	43	0	0	25	5	16.67	-	-	-	T	102822837	C	T	102822837	3	4	916	1	0	0	0	0	1	0	0	0	9723	855	30	2	736	2	MMP13	11	102822837	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	14789038	102822837	32183679	25	73868										
BARX2	0	genome.wustl.edu	37	chr11	129306670	129306670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cccttccctgcgggcatatcCgctcctctcggtgatcaccc	8	19	2	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	11	129306670	129306670	C	T	SNP	BARX2	ENST00000281437	human	ensembl	69_37n	1	known	missense	c.212	p.P71L	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	BARX2	HGNC	ENSG00000043039	116	0	0	85	18	17.48	-	-	-	T	129306670	C	T	129306670	3	4	916	1	0	0	0	0	1	0	0	0	1320	652	23	1	218	1	BARX2	11	129306670	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	26483833	129306670	5699846	26	73869										
GTSF1	0	genome.wustl.edu	37	chr12	54849876	54849876	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tttaccattctataattagaTtaggaggaaaatgagaaccc	7	6	1	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	12	54849876	54849876	T	G	SNP	GTSF1	ENST00000552336	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	GTSF1	HGNC	ENSG00000170627	26	0	0	17	3	15	-	-	-	G	54849876	T	G	54849876	1	3	916	0	1	0	0	0	0	0	0	0	6937	1508	52	5		5	GTSF1	12	54849876	RNA	SNP	T	TCGA-EW-A2FR-01A-11D-A21Q-09		54849876	79002019	27	73870										
POLE	0	genome.wustl.edu	37	chr12	133202330	133202330	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ggcgcctgacagttggagcaGagccactgaggcaggaccgc	16	12	0	3			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	12	133202330	133202330	G	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.6591	p.L2197	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	50	0	0	36	11	23.4	-	-	-	A	133202330	G	A	133202330	2	1	916	1	0	0	0	0	0	0	0	1	12270	929	33	2		2	POLE	12	133202330	Silent	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	78352454	133202330	649565	28	73871										
DIAPH3	0	genome.wustl.edu	37	chr13	60544098	60544098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ctttttgttggcaacaaaatGtattctcaagtttacaaagc	6	7	1	0			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	13	60544098	60544098	G	A	SNP	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	missense	c.2054	p.T685I	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	21	0	0	14	4	22.22	-	-	-	A	60544098	G	A	60544098	3	1	916	1	0	0	0	0	1	0	0	0	4556	1377	48	4	1595	4	DIAPH3	13	60544098	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		60544098	54625780	29	73872										
OR4K2	0	genome.wustl.edu	37	chr14	20345024	20345024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atgttctgggcctctttatgAtctcaacaagtggcataatt	8	8	3	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	14	20345024	20345024	A	G	SNP	OR4K2	ENST00000298642	human	ensembl	69_37n	1	known	missense	c.598	p.I200V	0.963	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K2	HGNC	ENSG00000165762	66	0	0	44	7	13.73	-	-	-	G	20345024	A	G	20345024	3	3	916	1	0	0	0	0	1	0	0	0	11145	333	12	5	600	5	OR4K2	14	20345024	Missense_Mutation	SNP	A	TCGA-EW-A2FR-01A-11D-A21Q-09		20345024	87004516	30	73873										
GABRA5	0	genome.wustl.edu	37	chr15	27188500	27188500	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ctcggcgctgatagagtttgCcacggtcaattactttacca	9	11	1	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	15	27188500	27188500	C	G	SNP	GABRA5	ENST00000335625	human	ensembl	69_37n	1	known	missense	c.1016	p.A339G	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297	60	0	0	39	5	11.36	-	-	-	G	27188500	C	G	27188500	3	3	916	1	0	0	0	0	1	0	0	0	6213	739	26	4	1046	4	GABRA5	15	27188500	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		27188500	75342892	31	73874										
SLC6A2	0	genome.wustl.edu	37	chr16	55719076	55719076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cgtggtgtcctgcaccttcaCgagagcagcgggattcatga	13	11	2	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	16	55719076	55719076	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	69_37n	1	known	silent	c.666	p.H222	0.129	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546	107	0	0	80	15	15.79	-	-	-	T	55719076	C	T	55719076	2	4	916	1	0	0	0	0	0	0	0	1	14772	535	19	1		1	SLC6A2	16	55719076	Silent	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		55719076	34635677	32	73875										
CLEC18C	0	genome.wustl.edu	37	chr16	70208416	70208416	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gcctgagccccaggccgtgcGggtggtttaatgaggaagcc	16	11	0	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	16	70208416	70208416	G	C	SNP	CLEC18C	ENST00000561612	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CLEC18C	HGNC	ENSG00000157335	10	0	0	5	3	37.5	-	-	-	C	70208416	G	C	70208416	1	2	916	0	1	0	0	0	0	0	0	0	3534	1131	39	3		3	CLEC18C	16	70208416	RNA	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	14489340	70208416	20146337	33	73876										
MC1R	0	genome.wustl.edu	37	chr16	89981162	89981165	+	RNA	DEL	TGTG	TGTG	-													0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tgtgtgtgtgggtgcacattTgtgtgtgtgtgtgcctgtgt							TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	TGTG	TGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	16	89981162	89981165	TGTG	-	DEL	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.985:0.991:0.994:0.989	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	82	0	0	33	5	13.16	-	-	-	-	89981165	TGTG	-	89981162	6	5	916	0	1	1	0	1	0	0	0	0	9434	1827	63	0		0	MC1R	16	89981162	RNA	DEL	TGTG	TCGA-EW-A2FR-01A-11D-A21Q-09	19772746	89981162	373591	34	73877										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	23	7	22.58	-	-	-	T	7578406	C	T	7578406	3	4	916	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		7578406	73616804	35	73878										
TNS4	0	genome.wustl.edu	37	chr17	38643606	38643606	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	actgggtcttgtacacagggAcactgagccaaggctgtgga	14	9	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	17	38643606	38643606	A	C	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.970	p.S324A	0.289	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	44	0	0	14	4	22.22	-	-	-	C	38643606	A	C	38643606	3	2	916	1	0	0	0	0	1	0	0	0	16440	275	10	5	1217	5	TNS4	17	38643606	Missense_Mutation	SNP	A	TCGA-EW-A2FR-01A-11D-A21Q-09	31065200	38643606	42551604	36	73879										
BRCA1	0	genome.wustl.edu	37	chr17	41246452	41246452	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ccaaggaacatcttcagtatCtctaggattctctgagcatg	8	10	4	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	17	41246452	41246452	C	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.1096	p.D366N	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	72	0	0	72	18	20	-	-	-	T	41246452	C	T	41246452	3	4	916	1	0	0	0	0	1	0	0	0	1506	913	32	2	4621	2	BRCA1	17	41246452	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	2602846	41246452	39948758	37	73880										
TANC2	0	genome.wustl.edu	37	chr17	61391823	61391823	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	aagtgcccagcatcactacaGagtcagtgtttgttggccga	11	10	2	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	17	61391823	61391823	G	C	SNP	TANC2	ENST00000424789	human	ensembl	69_37n	1	known	missense	c.1012	p.E338Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921	40	0	0	27	15	35.71	-	-	-	C	61391823	G	C	61391823	3	2	916	1	0	0	0	0	1	0	0	0	15637	943	33	2	1042	2	TANC2	17	61391823	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	20145371	61391823	19803387	38	73881										
SIRT7	0	genome.wustl.edu	37	chr17	79872542	79872542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cggcagcccactcctcaggtGgagcccgtcacagttctgag	12	15	3	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	17	79872542	79872542	G	T	SNP	SIRT7	ENST00000328666	human	ensembl	69_37n	-1	known	missense	c.517	p.H173N	1.000	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT7	HGNC	ENSG00000187531	64	0	0	34	4	10.53	-	-	-	T	79872542	G	T	79872542	3	4	916	1	0	0	0	0	1	0	0	0	14432	1348	47	4	705	4	SIRT7	17	79872542	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	18480719	79872542	1322668	39	73882										
ANO8	0	genome.wustl.edu	37	chr19	17438641	17438641	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gaaggcggacgagaagagcaCaacgtagccgaactgcacga	14	10	0	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	17438641	17438641	C	A	SNP	ANO8	ENST00000159087	human	ensembl	69_37n	-1	known	missense	c.2275	p.V759L	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	55	0	0	34	11	24.44	-	-	-	A	17438641	C	A	17438641	3	1	916	1	0	0	0	0	1	0	0	0	702	478	17	4	1443	4	ANO8	19	17438641	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09		17438641	41690342	40	73883										
ZNF573	0	genome.wustl.edu	37	chr19	38230548	38230548	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tttgagcgcctactaaaagtCttcccacattccttacattt	4	12	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	38230548	38230548	C	A	SNP	ZNF573	ENST00000590414	human	ensembl	69_37n	-1	known	missense	c.843	p.K281N	0.598	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144	30	0	0	41	10	19.61	-	-	-	A	38230548	C	A	38230548	3	1	916	1	0	0	0	0	1	0	0	0	18101	912	32	2	1158	2	ZNF573	19	38230548	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	20791907	38230548	20898435	41	73884										
ZNF573	0	genome.wustl.edu	37	chr19	38230680	38230680	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ttcccaccagtgtgaattctCtcatgttgaacaatgtgtga	8	9	2	3			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	38230680	38230680	C	G	SNP	ZNF573	ENST00000590414	human	ensembl	69_37n	-1	known	missense	c.711	p.E237D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144	94	0	0	79	23	22.55	-	-	-	G	38230680	C	G	38230680	3	3	916	1	0	0	0	0	1	0	0	0	18101	912	32	2	1290	2	ZNF573	19	38230680	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	132	38230680	20898303	42	73885										
ATP1A3	0	genome.wustl.edu	37	chr19	42473007	42473007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	atcggcccactggacgacaaCgatgctcacaaagaaggccg	11	13	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	42473007	42473007	C	T	SNP	ATP1A3	ENST00000545399	human	ensembl	69_37n	-1	known	missense	c.2788	p.V930I	1.000	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A3	HGNC	ENSG00000105409	72	0	0	54	11	16.92	-	-	-	T	42473007	C	T	42473007	3	4	916	1	0	0	0	0	1	0	0	0	1134	536	19	1	308	1	ATP1A3	19	42473007	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	4242327	42473007	16655976	43	73886										
SPIB	0	genome.wustl.edu	37	chr19	50931310	50931310	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	cgcagggactcgcaagaagcTgcgcctgtaccagttcctgc	12	14	0	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	50931310	50931310	T	G	SNP	SPIB	ENST00000270632	human	ensembl	69_37n	1	known	missense	c.506	p.L169R	1.000	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	SPIB	HGNC	ENSG00000142539	114	0	0	42	8	16	-	-	-	G	50931310	T	G	50931310	3	3	916	1	0	0	0	0	1	0	0	0	15141	1580	55	5	528	5	SPIB	19	50931310	Missense_Mutation	SNP	T	TCGA-EW-A2FR-01A-11D-A21Q-09	8458303	50931310	8197673	44	73887										
ZNF701	0	genome.wustl.edu	37	chr19	53086136	53086136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tccttacacgtgtaatgagtGtggcaagacattcagtcaca	9	9	2	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	19	53086136	53086136	G	T	SNP	ZNF701	ENST00000301093	human	ensembl	69_37n	1	known	missense	c.1022	p.C341F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	99	0	0	49	20	28.99	-	-	-	T	53086136	G	T	53086136	3	4	916	1	0	0	0	0	1	0	0	0	18201	1377	48	4	1036	4	ZNF701	19	53086136	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	2154826	53086136	6042847	45	73888										
SLC25A18	0	genome.wustl.edu	37	chr22	18072925	18072925	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	ctggctgccgggcactggtcAtagcacctctctttgggatt	12	12	2	0			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	22	18072925	18072925	A	G	SNP	SLC25A18	ENST00000327451	human	ensembl	69_37n	1	known	missense	c.871	p.I291V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902	64	0	0	41	8	16.33	-	-	-	G	18072925	A	G	18072925	3	3	916	1	0	0	0	0	1	0	0	0	14569	217	8	5	905	5	SLC25A18	22	18072925	Missense_Mutation	SNP	A	TCGA-EW-A2FR-01A-11D-A21Q-09		18072925	33231641	46	73889										
KLF8	0	genome.wustl.edu	37	chrX	56292171	56292171	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	gaggagatggtaaaaatgctGgatcaggtaagtaacaatat	12	3	1	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	X	56292171	56292171	G	T	SNP	KLF8	ENST00000468660	human	ensembl	69_37n	1	known	nonsense	c.640	p.G214*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349	48	0	0	27	3	10	-	-	-	T	56292171	G	T	56292171	4	4	916	1	0	0	0	0	0	1	0	0	8405	1349	47	4	650	4	KLF8	23	56292171	Nonsense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09		56292171	98978389	47	73890										
TRMT2B	0	genome.wustl.edu	37	chrX	100292961	100292961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tctcagatttgggtacagccGttgtcacactgactccattg	9	11	2	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	X	100292961	100292961	G	A	SNP	TRMT2B	ENST00000372935	human	ensembl	69_37n	-1	known	missense	c.383	p.T128M	0.000	NULL	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917	124	0	0	63	8	11.27	-	-	-	A	100292961	G	A	100292961	3	1	916	1	0	0	0	0	1	0	0	0	16662	1145	40	1	1171	1	TRMT2B	23	100292961	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	44000790	100292961	54977599	48	73891										
MUM1L1	0	genome.wustl.edu	37	chrX	105449660	105449660	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	tacagtcagaggacagtgctCcacctacagaggaaactgcc	10	12	1	2			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	X	105449660	105449660	C	G	SNP	MUM1L1	ENST00000337685	human	ensembl	69_37n	1	known	missense	c.235	p.P79A	0.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC	ENSG00000157502	22	0	0	13	5	27.78	-	-	-	G	105449660	C	G	105449660	3	3	916	1	0	0	0	0	1	0	0	0	10058	855	30	2	237	2	MUM1L1	23	105449660	Missense_Mutation	SNP	C	TCGA-EW-A2FR-01A-11D-A21Q-09	5156699	105449660	49820900	49	73892										
DDX26B	0	genome.wustl.edu	37	chrX	134711194	134711194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.16	8	0.410985486325868	1.50753012048193	2.26129518072289	1.25627510040161	0.649916646820672	1	0	acgtccaggggaacccaacaGtcctatgtcatctaagagaa	9	11	2	1			TCGA-EW-A2FR-01A-11D-A21Q-09	TCGA-EW-A2FR-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91439f81-e2ff-4d75-9fcc-aee49fc9c5aa	d5b0ec6a-964e-45ca-bfdd-31757e3dfeaf	X	134711194	134711194	G	A	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	1	known	missense	c.1850	p.S617N	0.842	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	69	0	0	43	10	18.87	-	-	-	A	134711194	G	A	134711194	3	1	916	1	0	0	0	0	1	0	0	0	4384	1029	36	4	1904	4	DDX26B	23	134711194	Missense_Mutation	SNP	G	TCGA-EW-A2FR-01A-11D-A21Q-09	29261534	134711194	20559366	50	73893										
ARID1A	0	genome.wustl.edu	37	chr1	27100207	27100207	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	agcagcagcagcagcagcaaCggtgagtaaagcctggtctc	13	11	1	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	1	27100207	27100207	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.4003	p.R1335*	0.945	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	32	0	0	25	20	44.44	-	-	-	T	27100207	C	T	27100207	4	4	917	1	0	0	0	0	0	1	0	0	915	550	19	1	4065	1	ARID1A	1	27100207	Nonsense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09		27100207	222150414	1	73894										
GBP4	0	genome.wustl.edu	37	chr1	89662872	89662872	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	acaatggccaccaccaccacGggctgagaaatcttgtcaag	9	13	2	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	1	89662872	89662872	G	A	SNP	GBP4	ENST00000355754	human	ensembl	69_37n	-1	known	silent	c.156	p.P52	0.684	pfam_Guanylate-bd_N	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C	-	no_errors	GBP4	HGNC	ENSG00000162654	53	0	0	45	19	28.79	-	-	-	A	89662872	G	A	89662872	2	1	917	1	0	0	0	0	0	0	0	1	6326	1103	39	1		1	GBP4	1	89662872	Silent	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09	62562665	89662872	159587749	2	73895										
FLG	0	genome.wustl.edu	37	chr1	152278434	152278434	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tggtggtgggatccatgtctTtctcctgcacttgatcttgc	11	10	3	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	1	152278434	152278434	T	G	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	missense	c.8928	p.E2976D	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	11	0	0	12	7	36.84	-	-	-	G	152278434	T	G	152278434	3	3	917	1	0	0	0	0	1	0	0	0	5968	1838	64	5	3261	5	FLG	1	152278434	Missense_Mutation	SNP	T	TCGA-EW-A2FS-01A-11D-A17D-09	62615562	152278434	96972187	3	73896										
FCAMR	0	genome.wustl.edu	37	chr1	207134288	207134288	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	cttctgctctttgaaggtggActctctggaatcggagcagg	13	9	3	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	1	207134288	207134288	A	G	SNP	FCAMR	ENST00000324852	human	ensembl	69_37n	-1	novel	silent	c.933	p.S311	0.007	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCAMR	HGNC	ENSG00000162897	24	0	0	60	17	22.08	-	-	-	G	207134288	A	G	207134288	2	3	917	1	0	0	0	0	0	0	0	1	5818	272	10	5		5	FCAMR	1	207134288	Silent	SNP	A	TCGA-EW-A2FS-01A-11D-A17D-09	54855854	207134288	42116333	4	73897										
NEB	0	genome.wustl.edu	37	chr2	152534685	152534685	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tccctttagccttttcatagTcttttttgtactgaacctat	4	10	2	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	2	152534685	152534685	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.3272	p.D1091G	1.000	pfam_Nebulin_35r-motif,superfamily_Adhesion_dom_bac,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	25	0	0	24	9	27.27	-	-	-	C	152534685	T	C	152534685	3	2	917	1	0	0	0	0	1	0	0	0	10374	1667	58	5	23014	5	NEB	2	152534685	Missense_Mutation	SNP	T	TCGA-EW-A2FS-01A-11D-A17D-09		152534685	90664688	5	73898										
RPL37A	0	genome.wustl.edu	37	chr2	217364721	217364722	+	In_Frame_Ins	INS	-	-	GAA													0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tggcactgtggttcctgcatINSgaagacagtggctggcggtg							TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	2	217364721	217364722	-	GAA	INS	RPL37A	ENST00000491306	human	ensembl	69_37n	1	known	in_frame_ins	c.182_183	p.63in_frame_insK	1.000:1.000	pfam_Ribosomal_L37ae,superfamily_Ribosomal_zn-bd_dom,tigrfam_Ribosomal_L37ae	pfam_Ribosomal_L37ae,superfamily_Ribosomal_zn-bd_dom,tigrfam_Ribosomal_L37ae	-	no_errors	RPL37A	HGNC	ENSG00000197756	65	0	0	60	29	32.58	-	-	-	GAA	217364722	-	GAA	217364721	7	5	917	1	0	1	1	0	0	0	0	0	13676	1464	51	0	192	0	RPL37A	2	217364721	In_Frame_Ins	INS	-	TCGA-EW-A2FS-01A-11D-A17D-09	64830036	217364721	25834652	6	73899										
CCR1	0	genome.wustl.edu	37	chr3	46245419	46245419	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	cgatggccaggtacctgtcaAtcgtcagcaggatgatgaaa	12	9	2	2			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	3	46245419	46245419	A	T	SNP	CCR1	ENST00000296140	human	ensembl	69_37n	-1	known	missense	c.386	p.I129N	0.114	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_P2_purnocptor,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	27	0	0	16	13	44.83	-	-	-	T	46245419	A	T	46245419	3	4	917	1	0	0	0	0	1	0	0	0	2968	101	4	5	685	5	CCR1	3	46245419	Missense_Mutation	SNP	A	TCGA-EW-A2FS-01A-11D-A17D-09		46245419	151777011	7	73900										
PCDH12	0	genome.wustl.edu	37	chr5	141329143	141329143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	ggccatctgtgtctgggattGcactcctgcaaaagaaacca	10	11	2	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	5	141329143	141329143	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.2984	p.A995V	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	40	0	0	27	4	12.9	-	-	-	A	141329143	G	A	141329143	3	1	917	1	0	0	0	0	1	0	0	0	11583	1319	46	4	578	4	PCDH12	5	141329143	Missense_Mutation	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		141329143	39586117	8	73901										
SERPINB9	0	genome.wustl.edu	37	chr6	2890539	2890539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	caaagcagctcgacgctgccGctgcctcggtgccttcttca	10	16	2	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	6	2890539	2890539	G	A	SNP	SERPINB9	ENST00000380698	human	ensembl	69_37n	-1	known	missense	c.989	p.A330V	0.852	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB9	HGNC	ENSG00000170542	22	0	0	14	12	46.15	-	-	-	A	2890539	G	A	2890539	3	1	917	1	0	0	0	0	1	0	0	0	14196	1087	38	1	145	1	SERPINB9	6	2890539	Missense_Mutation	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		2890539	168224528	9	73902										
SLC25A27	0	genome.wustl.edu	37	chr6	46623636	46623636	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	aaatgcaaggagaagcagctCttgctcggttgggagacggt	15	7	1	2			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	6	46623636	46623636	C	A	SNP	SLC25A27	ENST00000371347	human	ensembl	69_37n	1	known	missense	c.163	p.L55I	0.995	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A27	HGNC	ENSG00000153291	37	0	0	54	7	11.48	-	-	-	A	46623636	C	A	46623636	3	1	917	1	0	0	0	0	1	0	0	0	14579	913	32	2	169	2	SLC25A27	6	46623636	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09	43733097	46623636	124491431	10	73903										
MUC17	0	genome.wustl.edu	37	chr7	100678652	100678652	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	ctaatgaagtcagttcatctCctacacctgctgaaggtacc	7	12	3	2			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	7	100678652	100678652	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.3955	p.P1319S	0.016	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	59	0	0	52	10	16.13	-	-	-	T	100678652	C	T	100678652	3	4	917	1	0	0	0	0	1	0	0	0	10046	855	30	2	3965	2	MUC17	7	100678652	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09		100678652	58460011	11	73904										
DNA2	0	genome.wustl.edu	37	chr10	70182495	70182495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	aggggaggaagctgctgatgGtcccccactaacacaaatct	11	11	1	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	10	70182495	70182495	G	A	SNP	DNA2	ENST00000440722	human	ensembl	69_37n	-1	putative	missense	c.325	p.P109S	0.974	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNA2	HGNC	ENSG00000138346	35	0	0	31	4	11.43	-	-	-	A	70182495	G	A	70182495	3	1	917	1	0	0	0	0	1	0	0	0	4632	1252	44	4	849	4	DNA2	10	70182495	Missense_Mutation	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		70182495	65352252	12	73905										
SLC22A9	0	genome.wustl.edu	37	chr11	63149641	63149641	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	attgttgaagattttgaaatCcaccatgaaaaaagaactgg	8	5	0	5			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	11	63149641	63149641	C	G	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	1	known	missense	c.965	p.S322C	0.004	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	48	0	0	50	11	17.74	-	-	-	G	63149641	C	G	63149641	3	3	917	1	0	0	0	0	1	0	0	0	14550	855	30	2	987	2	SLC22A9	11	63149641	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09		63149641	71856875	13	73906										
SCN8A	0	genome.wustl.edu	37	chr12	52200943	52200943	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	ccaatcacaaccacactgcgTcgcaagcaggaggaggtatc	10	13	1	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	12	52200943	52200943	T	C	SNP	SCN8A	ENST00000354534	human	ensembl	69_37n	1	known	silent	c.5673	p.R1891	0.997	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	27	0	0	30	5	14.29	-	-	-	C	52200943	T	C	52200943	2	2	917	1	0	0	0	0	0	0	0	1	14012	1654	58	5		5	SCN8A	12	52200943	Silent	SNP	T	TCGA-EW-A2FS-01A-11D-A17D-09		52200943	81650952	14	73907										
PRDM4	0	genome.wustl.edu	37	chr12	108150667	108150667	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	aatcccaggtgacttcctgaGactggcaaggcattgctcac	10	12	1	2			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	12	108150667	108150667	G	C	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	silent	c.87	p.V29	1.000	pirsf_Znf_PRDM4	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	28	0	0	25	11	30.56	-	-	-	C	108150667	G	C	108150667	2	2	917	1	0	0	0	0	0	0	0	1	12540	929	33	2		2	PRDM4	12	108150667	Silent	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09	55949724	108150667	25701228	15	73908										
SIAH3	0	genome.wustl.edu	37	chr13	46358082	46358082	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tggtgggggtgggcgtggtgGcggaggtggtggtggtggcg	28	3	0	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	13	46358082	46358082	G	C	SNP	SIAH3	ENST00000400405	human	ensembl	69_37n	-1	known	silent	c.246	p.R82	0.116	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475	13	0	0	17	6	26.09	-	-	-	C	46358082	G	C	46358082	2	2	917	1	0	0	0	0	0	0	0	1	14390	1190	42	4		4	SIAH3	13	46358082	Silent	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		46358082	68811796	16	73909										
EFS	0	genome.wustl.edu	37	chr14	23826504	23826504	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	gccagttctgttacacactgCaccatctcttggatggcagg	10	12	2	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	14	23826504	23826504	C	T	SNP	EFS	ENST00000216733	human	ensembl	69_37n	-1	known	silent	c.1617	p.V539	0.008	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	20	0	0	11	5	31.25	-	-	-	T	23826504	C	T	23826504	2	4	917	1	0	0	0	0	0	0	0	1	4994	697	25	4		4	EFS	14	23826504	Silent	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09		23826504	83523036	17	73910										
SEL1L	0	genome.wustl.edu	37	chr14	81955632	81955632	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	ccatagaggtaggccattccAagcccactctgtccaactgg	9	14	1	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	14	81955632	81955632	A	G	SNP	SEL1L	ENST00000336735	human	ensembl	69_37n	-1	known	silent	c.1359	p.L453	0.880	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537	34	0	0	28	4	12.5	-	-	-	G	81955632	A	G	81955632	2	3	917	1	0	0	0	0	0	0	0	1	14098	117	5	5		5	SEL1L	14	81955632	Silent	SNP	A	TCGA-EW-A2FS-01A-11D-A17D-09	58129128	81955632	25393908	18	73911										
CDC6	0	genome.wustl.edu	37	chr17	38447837	38447837	+	Frame_Shift_Del	DEL	A	A	-													0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tgagggaacacatctgtgggAaaaaagctggaagcctttac							TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	17	38447837	38447837	A	-	DEL	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	frame_shift_del	c.577	p.A195fs	0.924	smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	33	0	0	34	16	30.19	-	-	-	-	38447837	A	-	38447837	7	5	917	1	0	1	0	1	0	0	0	0	3112	247	9	0	587	0	CDC6	17	38447837	Frame_Shift_Del	DEL	A	TCGA-EW-A2FS-01A-11D-A17D-09		38447837	42747373	19	73912										
HOXB1	0	genome.wustl.edu	37	chr17	46607829	46607829	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	gcaaagctcgcggtctgctcGttcccataagggggatgctg	14	11	1	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	17	46607829	46607829	G	A	SNP	HOXB1	ENST00000239174	human	ensembl	69_37n	-1	known	silent	c.438	p.N146	0.008	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094	31	0	0	46	15	24.59	-	-	-	A	46607829	G	A	46607829	2	1	917	1	0	0	0	0	0	0	0	1	7350	1136	40	1		1	HOXB1	17	46607829	Silent	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09	8159992	46607829	34587381	20	73913										
HELZ	0	genome.wustl.edu	37	chr17	65184495	65184495	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tactggttccaatccaaagtCgaaaactatggtttggcgaa	9	8	0	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	17	65184495	65184495	C	A	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.1102	p.D368Y	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	47	0	0	61	9	12.86	-	-	-	A	65184495	C	A	65184495	3	1	917	1	0	0	0	0	1	0	0	0	7100	884	31	3	4814	3	HELZ	17	65184495	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09	18576666	65184495	16010715	21	73914										
TNFRSF11A	0	genome.wustl.edu	37	chr18	60036221	60036221	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	gacaggccctcccagcccacAgaccagttactgttcctcac	7	18	1	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	18	60036221	60036221	A	G	SNP	TNFRSF11A	ENST00000586569	human	ensembl	69_37n	1	known	silent	c.1071	p.T357	0.014	prints_TNFR_11A	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655	35	0	0	25	4	13.79	-	-	-	G	60036221	A	G	60036221	2	3	917	1	0	0	0	0	0	0	0	1	16379	175	7	5		5	TNFRSF11A	18	60036221	Silent	SNP	A	TCGA-EW-A2FS-01A-11D-A17D-09		60036221	18041027	22	73915										
GADD45GIP1	0	genome.wustl.edu	37	chr19	13065285	13065285	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	gttctcccgctgctgctgctGccagttcacaatcatctgtg	9	14	4	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	19	13065285	13065285	G	A	SNP	GADD45GIP1	ENST00000316939	human	ensembl	69_37n	-1	known	nonsense	c.406	p.Q136*	0.977	pfam_Damage-induce-interacting_prot	pfam_Damage-induce-interacting_prot	-	no_errors	GADD45GIP1	HGNC	ENSG00000179271	29	0	0	25	4	13.79	-	-	-	A	13065285	G	A	13065285	4	1	917	1	0	0	0	0	0	1	0	0	6233	1328	46	4	266	4	GADD45GIP1	19	13065285	Nonsense_Mutation	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		13065285	46063698	23	73916										
EMR3	0	genome.wustl.edu	37	chr19	14748981	14748981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	ggccacagtcacagcgggaaCgccatagccgactgggaaca	13	13	1	0			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	19	14748981	14748981	C	T	SNP	EMR3	ENST00000253673	human	ensembl	69_37n	-1	known	missense	c.1420	p.V474I	0.346	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355	24	0	0	31	9	22.5	-	-	-	T	14748981	C	T	14748981	3	4	917	1	0	0	0	0	1	0	0	0	5143	536	19	1	562	1	EMR3	19	14748981	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09	1683696	14748981	44380002	24	73917										
GSPT2	0	genome.wustl.edu	37	chrX	51487776	51487776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	tagtgcttattaataagatgGatgatcccacagtaaattgg	9	5	0	2			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	X	51487776	51487776	G	A	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	1	known	missense	c.1054	p.D352N	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	48	0	0	58	8	12.12	-	-	-	A	51487776	G	A	51487776	3	1	917	1	0	0	0	0	1	0	0	0	6878	1174	41	2	1056	2	GSPT2	23	51487776	Missense_Mutation	SNP	G	TCGA-EW-A2FS-01A-11D-A17D-09		51487776	103782784	25	73918										
ODZ1	0	genome.wustl.edu	37	chrX	123663729	123663729	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0384615384615385	1	0.994628167771038	0.605386416861827	2.82513661202186	0	1	1	0	cataccttccatcttgccggCtgatggtaaacccataatca	6	13	2	1			TCGA-EW-A2FS-01A-11D-A17D-09	TCGA-EW-A2FS-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e8aeaa53-be93-48db-bf32-900947a6cf05	663bdc96-b603-4dd7-ab57-27e5ca557a57	X	123663729	123663729	C	A	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.2756	p.S919I	1.000	superfamily_CarboxyPept-like_regulatory	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	43	0	0	56	11	16.42	-	-	-	A	123663729	C	A	123663729	3	1	917	1	0	0	0	0	1	0	0	0	10907	797	28	4	5510	4	ODZ1	23	123663729	Missense_Mutation	SNP	C	TCGA-EW-A2FS-01A-11D-A17D-09	72175953	123663729	31606831	26	73919										
PADI6	0	genome.wustl.edu	37	chr1	17699575	17699575	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gccccccagaagtgccagtgCttcaccatccatggctctgg	10	16	2	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	1	17699575	17699575	C	T	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.120	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	74	0	0	87	17	16.35	-	-	-	T	17699575	C	T	17699575	1	4	918	0	1	0	0	0	0	0	0	0	11454	805	28	4		4	PADI6	1	17699575	RNA	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09		17699575	231551046	1	73920										
ASTN1	0	genome.wustl.edu	37	chr1	176998868	176998868	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccccttcagggttcaagaagGcggaaccagctgtaatgaaa	11	10	2	2			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	1	176998868	176998868	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.1022	p.A341D	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	71	0	0	68	18	20.93	-	-	-	T	176998868	G	T	176998868	3	4	918	1	0	0	0	0	1	0	0	0	1068	1203	42	4	2942	4	ASTN1	1	176998868	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09	159299293	176998868	72251753	2	73921										
KIAA1614	0	genome.wustl.edu	37	chr1	180885810	180885810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gcccgtggcctccagaagccGaatggacacttcctgaccat	10	15	0	2			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	1	180885810	180885810	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	69_37n	1	known	missense	c.571	p.E191K	0.027	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	26	0	0	35	6	14.63	-	-	-	A	180885810	G	A	180885810	3	1	918	1	0	0	0	0	1	0	0	0	8300	1059	37	1	577	1	KIAA1614	1	180885810	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09	3886942	180885810	68364811	3	73922										
ERLEC1	0	genome.wustl.edu	37	chr2	54040191	54040191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	gagcttatcatcttcaagacGatggtacccagacagtcagg	10	10	4	2			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	2	54040191	54040191	G	A	SNP	ERLEC1	ENST00000185150	human	ensembl	69_37n	1	known	missense	c.1207	p.D403N	1.000	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912	48	0	0	47	10	17.24	-	-	-	A	54040191	G	A	54040191	3	1	918	1	0	0	0	0	1	0	0	0	5268	1058	37	1	1249	1	ERLEC1	2	54040191	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09		54040191	189159182	4	73923										
ITGB5	0	genome.wustl.edu	37	chr3	124567275	124567275	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	agcttcctcatctcctccgcGagtttggtgcccaggctccg	10	16	2	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	3	124567275	124567275	G	A	SNP	ITGB5	ENST00000296181	human	ensembl	69_37n	-1	known	silent	c.492	p.L164	0.796	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,smart_VWF_A	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781	98	0	0	78	17	17.89	-	-	-	A	124567275	G	A	124567275	2	1	918	1	0	0	0	0	0	0	0	1	7952	1045	37	1		1	ITGB5	3	124567275	Silent	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09		124567275	73455155	5	73924										
COL6A5	0	genome.wustl.edu	37	chr3	130116570	130116570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tcaagggggtgagctgtgggGctggcacagaggcacaggtg	20	7	1	2			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	3	130116570	130116570	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	1	known	missense	c.3712	p.A1238S	0.996	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	81	0	0	58	25	30.12	-	-	-	T	130116570	G	T	130116570	3	4	918	1	0	0	0	0	1	0	0	0	3732	1203	42	4	3742	4	COL6A5	3	130116570	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09	5549295	130116570	67905860	6	73925										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	81	0	0	56	23	29.11	-	-	-	G	178952085	A	G	178952085	3	3	918	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-EW-A2FV-01A-11D-A17D-09	48835515	178952085	19070345	7	73926										
PCDHAC2	0	genome.wustl.edu	37	chr5	140347381	140347381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgactgaccggggtccagtgCccatggcaggtcactgcaag	14	13	1	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	5	140347381	140347381	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	69_37n	1	known	missense	c.1030	p.P344S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	50	0	0	35	6	14.63	-	-	-	T	140347381	C	T	140347381	3	4	918	1	0	0	0	0	1	0	0	0	11606	739	26	4	1032	4	PCDHAC2	5	140347381	Missense_Mutation	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09		140347381	40567879	8	73927										
PARK2	0	genome.wustl.edu	37	chr6	161969946	161969946	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ctctggtcaggctccggcagCagccccgctccacagccagg	12	18	2	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	6	161969946	161969946	C	A	SNP	PARK2	ENST00000366898	human	ensembl	69_37n	-1	known	silent	c.1023	p.L341	1.000	pfam_Znf_C6HC,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin	pfam_Ubiquitin,pfam_Znf_C6HC,pfam_SUMO,smart_Ubiquitin,smart_Znf_C6HC,pirsf_Parkin,prints_Parkin,prints_Ubiquitin_subgr,pfscan_Ubiquitin_supergroup	-	no_errors	PARK2	HGNC	ENSG00000185345	37	0	0	27	10	27.03	-	-	-	A	161969946	C	A	161969946	2	1	918	1	0	0	0	0	0	0	0	1	11522	697	25	4		4	PARK2	6	161969946	Silent	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09		161969946	9145121	9	73928										
TNRC18	0	genome.wustl.edu	37	chr7	5417112	5417112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	agcgacctgagcccgccagcGccgggccccccgtcaccatg	12	20	1	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	7	5417112	5417112	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.2351	p.A784V	0.612	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	28	0	0	23	5	17.24	-	-	-	A	5417112	G	A	5417112	3	1	918	1	0	0	0	0	1	0	0	0	16434	1087	38	1	6651	1	TNRC18	7	5417112	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09		5417112	153721551	10	73929										
KIF13B	0	genome.wustl.edu	37	chr8	29043966	29043966	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aggttggtcagctgtgcccaTcatggtataagattttccag	11	8	2	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	8	29043966	29043966	T	C	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.340	p.M114V	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	72	0	0	73	14	16.09	-	-	-	C	29043966	T	C	29043966	3	2	918	1	0	0	0	0	1	0	0	0	8327	1435	50	5	5280	5	KIF13B	8	29043966	Missense_Mutation	SNP	T	TCGA-EW-A2FV-01A-11D-A17D-09		29043966	117320056	11	73930										
UBAP1	0	genome.wustl.edu	37	chr9	34241537	34241537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	catttgataatctggagttaAaaactattgatgagaaggaa	9	3	1	3			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	9	34241537	34241537	A	C	SNP	UBAP1	ENST00000545103	human	ensembl	69_37n	1	known	missense	c.706	p.K236Q	1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006	92	0	0	93	15	13.89	-	-	-	C	34241537	A	C	34241537	3	2	918	1	0	0	0	0	1	0	0	0	16933	15	1	5	761	5	UBAP1	9	34241537	Missense_Mutation	SNP	A	TCGA-EW-A2FV-01A-11D-A17D-09		34241537	106971894	12	73931										
FRMPD1	0	genome.wustl.edu	37	chr9	37732388	37732388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cggctctgcacatccaggaaCggatctacgcctgtgcccag	11	15	2	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	9	37732388	37732388	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	1	known	missense	c.946	p.R316W	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	97	0	0	52	15	22.39	-	-	-	T	37732388	C	T	37732388	3	4	918	1	0	0	0	0	1	0	0	0	6106	527	19	1	980	1	FRMPD1	9	37732388	Missense_Mutation	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09	3490851	37732388	103481043	13	73932										
MARK2	0	genome.wustl.edu	37	chr11	63670121	63670122	+	Frame_Shift_Del	DEL	AG	AG	-													0	0	1	0	NA	0	1	1	0	ttcttactctaagaagactcAgagtaacaacgcagaaaata							TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	11	63670121	63670122	AG	-	DEL	MARK2	ENST00000402010	human	ensembl	69_37n	1	known	frame_shift_del	c.1283_1284	p.S429fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518	34	0	0	31	6	16.22	-	-	-	-	63670122	AG	-	63670121	7	5	918	1	0	1	0	1	0	0	0	0	9384	188	7	0	1333	0	MARK2	11	63670121	Frame_Shift_Del	DEL	AG	TCGA-EW-A2FV-01A-11D-A17D-09		63670121	71336395	14	73933										
FBXL3	0	genome.wustl.edu	37	chr13	77595879	77595879	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	tggagaataatgtcctgaagGagattaccccaatcacaagt	9	8	1	3			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	13	77595879	77595879	G	A	SNP	FBXL3	ENST00000355619	human	ensembl	69_37n	-1	known	silent	c.117	p.L39	0.974	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like	-	no_errors	FBXL3	HGNC	ENSG00000005812	97	0	0	85	19	18.27	-	-	-	A	77595879	G	A	77595879	2	1	918	1	0	0	0	0	0	0	0	1	5766	1161	41	2		2	FBXL3	13	77595879	Silent	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09		77595879	37573999	15	73934										
C15orf52	0	genome.wustl.edu	37	chr15	40632158	40632158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgcgcagggcaactatcctcCgatccagctctgcgtccttc	9	16	1	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	15	40632158	40632158	C	T	SNP	C15orf52	ENST00000559313	human	ensembl	69_37n	-1	known	missense	c.203	p.R68Q	1.000	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549	102	0	0	63	12	16	-	-	-	T	40632158	C	T	40632158	3	4	918	1	0	0	0	0	1	0	0	0	1812	652	23	1	1441	1	C15orf52	15	40632158	Missense_Mutation	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09		40632158	61899234	16	73935										
IVD	0	genome.wustl.edu	37	chr15	40702971	40702971	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	NA	0	1	1	0	tgtacgcaatgggaatgaggCccagaaagagaagtatctcc							TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	15	40702971	40702971	C	-	DEL	IVD	ENST00000487418	human	ensembl	69_37n	1	known	frame_shift_del	c.440	p.Q148fs	0.998	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928	66	0	0	36	7	16.28	-	-	-	-	40702971	C	-	40702971	7	5	918	1	0	1	0	1	0	0	0	0	7982	739	26	0	454	0	IVD	15	40702971	Frame_Shift_Del	DEL	C	TCGA-EW-A2FV-01A-11D-A17D-09	70813	40702971	61828421	17	73936										
B3GNT9	0	genome.wustl.edu	37	chr16	67183812	67183812	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtcgtcgaaggcccagagcaGgatgtccgcatacgcaaggc	14	12	0	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	16	67183812	67183812	G	T	SNP	B3GNT9	ENST00000449549	human	ensembl	69_37n	-1	known	missense	c.577	p.L193M	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT9	HGNC	ENSG00000237172	23	0	0	19	4	17.39	-	-	-	T	67183812	G	T	67183812	3	4	918	1	0	0	0	0	1	0	0	0	1268	991	35	4	635	4	B3GNT9	16	67183812	Missense_Mutation	SNP	G	TCGA-EW-A2FV-01A-11D-A17D-09		67183812	23170941	18	73937										
DSC1	0	genome.wustl.edu	37	chr18	28721981	28721981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	ccttgacaacacacagcactCcttcatttgtatttggatct	5	12	2	1			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	18	28721981	28721981	C	T	SNP	DSC1	ENST00000257198	human	ensembl	69_37n	-1	known	missense	c.1241	p.G414E	0.420	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmocollin,prints_Cadherin,prints_Desmo_cadherin	-	no_errors	DSC1	HGNC	ENSG00000134765	164	0	0	159	19	10.67	-	-	-	T	28721981	C	T	28721981	3	4	918	1	0	0	0	0	1	0	0	0	4800	855	30	2	1515	2	DSC1	18	28721981	Missense_Mutation	SNP	C	TCGA-EW-A2FV-01A-11D-A17D-09		28721981	49355267	19	73938										
RRBP1	0	genome.wustl.edu	37	chr20	17639786	17639786	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cggccttcttgccctggttcTgggccccctcggccttcttg	11	17	3	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	20	17639786	17639786	T	G	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.1367	p.Q456P	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	8	0	0	13	4	23.53	-	-	-	G	17639786	T	G	17639786	3	3	918	1	0	0	0	0	1	0	0	0	13764	1595	55	5		5	RRBP1	20	17639786	Missense_Mutation	SNP	T	TCGA-EW-A2FV-01A-11D-A17D-09		17639786	45385734	20	73939										
MAGEC2	0	genome.wustl.edu	37	chrX	141290731	141290731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tggcatcatctgcggtatcaAttgtggcctggactctctct	10	11	5	0			TCGA-EW-A2FV-01A-11D-A17D-09	TCGA-EW-A2FV-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4688c20c-f73d-4203-a123-acc833628062	feca40a1-64e9-488f-8c06-809bf7058b96	X	141290731	141290731	A	G	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.1043	p.I348T	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	113	0	0	78	32	29.09	-	-	-	G	141290731	A	G	141290731	3	3	918	1	0	0	0	0	1	0	0	0	9252	101	4	5	82	5	MAGEC2	23	141290731	Missense_Mutation	SNP	A	TCGA-EW-A2FV-01A-11D-A17D-09		141290731	13979829	21	73940										
TYW3	0	genome.wustl.edu	37	chr1	75198992	75198992	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	tgagcaaagcggacctcagcCggaagggcagtgttgacgag	16	9	1	2			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	1	75198992	75198992	C	T	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	1	known	missense	c.64	p.R22W	1.000	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	49	0	0	15	49	76.56	-	-	-	T	75198992	C	T	75198992	3	4	919	1	0	0	0	0	1	0	0	0	16917	643	23	1	66	1	TYW3	1	75198992	Missense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09		75198992	174051629	1	73941										
ZNF512	0	genome.wustl.edu	37	chr2	27822524	27822524	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	aagactatcgagaatttcctCagaagaagcataagctttat	7	7	1	4			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	2	27822524	27822524	C	T	SNP	ZNF512	ENST00000355467	human	ensembl	69_37n	1	known	nonsense	c.352	p.Q118*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943	62	0	0	69	10	12.66	-	-	-	T	27822524	C	T	27822524	4	4	919	1	0	0	0	0	0	1	0	0	18052	827	29	2	366	2	ZNF512	2	27822524	Nonsense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09		27822524	215376849	2	73942										
LRP1B	0	genome.wustl.edu	37	chr2	141259275	141259275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ccttataactgaccggaaggTcttgacagtcttgagaacat	9	9	2	3			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	2	141259275	141259275	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.8831	p.D2944A	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	57	0	0	13	51	78.46	-	-	-	G	141259275	T	G	141259275	3	3	919	1	0	0	0	0	1	0	0	0	9021	1667	58	5	5116	5	LRP1B	2	141259275	Missense_Mutation	SNP	T	TCGA-EW-A2FW-01A-11D-A17D-09	113436751	141259275	101940098	3	73943										
GARS	0	genome.wustl.edu	37	chr7	30662033	30662033	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ggagtatcttgccatttgtgAtgagtgctacattacagaaa	10	6	1	3			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	7	30662033	30662033	A	T	SNP	GARS	ENST00000389266	human	ensembl	69_37n	1	known	missense	c.1568	p.D523V	1.000	pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105	41	0	0	37	32	46.38	-	-	-	T	30662033	A	T	30662033	3	4	919	1	0	0	0	0	1	0	0	0	6292	333	12	5	1614	5	GARS	7	30662033	Missense_Mutation	SNP	A	TCGA-EW-A2FW-01A-11D-A17D-09		30662033	128476630	4	73944										
NRCAM	0	genome.wustl.edu	37	chr7	107823285	107823285	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ttgccacaaccacagatgtcCattcatcatcaccatctttc	3	15	4	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	7	107823285	107823285	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	nonsense	c.2384	p.W795*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	28	0	0	39	15	27.78	-	-	-	T	107823285	C	T	107823285	4	4	919	1	0	0	0	0	0	1	0	0	10717	595	21	4	1604	4	NRCAM	7	107823285	Nonsense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09	77161252	107823285	51315378	5	73945										
GATA3	0	genome.wustl.edu	37	chr10	8115871	8115872	+	Frame_Shift_Del	DEL	TC	TC	-													0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	catgtcctccctgagccacaTctcgcccttcagccactcca							TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	10	8115871	8115872	TC	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_del	c.1220_1221	p.S408fs	1.000:0.767	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	40	0	0	32	22	40.74	-	-	-	-	8115872	TC	-	8115871	7	5	919	1	0	1	0	1	0	0	0	0	6305	1435	50	0	1238	0	GATA3	10	8115871	Frame_Shift_Del	DEL	TC	TCGA-EW-A2FW-01A-11D-A17D-09		8115871	127418876	6	73946										
SEC61A2	0	genome.wustl.edu	37	chr10	12209886	12209886	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	cttattcaatcagtgtttgcGcagcaggtactactatatgt	8	8	2	0			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	10	12209886	12209886	G	A	SNP	SEC61A2	ENST00000495368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC61A2	HGNC	ENSG00000065665	21	0	0	18	17	48.57	-	-	-	A	12209886	G	A	12209886	1	1	919	0	1	0	0	0	0	0	0	0	14089	1102	38	1		1	SEC61A2	10	12209886	RNA	SNP	G	TCGA-EW-A2FW-01A-11D-A17D-09	4094015	12209886	123324861	7	73947										
SERPING1	0	genome.wustl.edu	37	chr11	57365774	57365776	+	In_Frame_Del	DEL	CTG	CTG	-													0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ggctgaccctgctgaccctcCtgctgctgctgctggctggg							TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	57365774	57365776	CTG	-	DEL	SERPING1	ENST00000278407	human	ensembl	69_37n	1	known	in_frame_del	c.31_33	p.L14in_frame_del	1.000:1.000:1.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	12	0	0	4	2	33.33	-	-	-	-	57365776	CTG	-	57365774	7	5	919	1	0	1	0	1	0	0	0	0	14204	680	24	0	33	0	SERPING1	11	57365774	In_Frame_Del	DEL	CTG	TCGA-EW-A2FW-01A-11D-A17D-09		57365774	77640742	8	73948										
CCDC87	0	genome.wustl.edu	37	chr11	66359044	66359044	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ccaacaaagttatcaatatcCattttttcaatggctttggg	6	8	2	0			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	66359044	66359044	C	A	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.1443	p.M481I	0.988	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	17	0	0	21	16	43.24	-	-	-	A	66359044	C	A	66359044	3	1	919	1	0	0	0	0	1	0	0	0	2889	594	21	4	1110	4	CCDC87	11	66359044	Missense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09	8993270	66359044	68647472	9	73949										
DYNC2H1	0	genome.wustl.edu	37	chr11	103090738	103090738	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	aagaaaaaataaaattgatgAtgaattaaaagaagtacaag	7	1	0	5			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	103090738	103090738	A	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.8927	p.D2976V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	30	0	0	2	15	88.24	-	-	-	T	103090738	A	T	103090738	3	4	919	1	0	0	0	0	1	0	0	0	4881	333	12	5	9149	5	DYNC2H1	11	103090738	Missense_Mutation	SNP	A	TCGA-EW-A2FW-01A-11D-A17D-09	36731694	103090738	31915778	10	73950										
IFT140	0	genome.wustl.edu	37	chr16	1575310	1575310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	tgggcacctcgaagcggtgcGtgtccgacttctcgtagctg	14	12	1	0			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	16	1575310	1575310	G	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.2786	p.T929M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	12	0	0	8	8	50	-	-	-	A	1575310	G	A	1575310	3	1	919	1	0	0	0	0	1	0	0	0	7610	1145	40	1	1642	1	IFT140	16	1575310	Missense_Mutation	SNP	G	TCGA-EW-A2FW-01A-11D-A17D-09		1575310	88779443	11	73951										
EFNB3	0	genome.wustl.edu	37	chr17	7611493	7611493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	cagacctggatctccgcttcAccatcaagttccaggagtat	8	13	3	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	17	7611493	7611493	A	G	SNP	EFNB3	ENST00000226091	human	ensembl	69_37n	1	known	missense	c.340	p.T114A	1.000	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947	8	0	0	16	9	36	-	-	-	G	7611493	A	G	7611493	3	3	919	1	0	0	0	0	1	0	0	0	4992	159	6	5	346	5	EFNB3	17	7611493	Missense_Mutation	SNP	A	TCGA-EW-A2FW-01A-11D-A17D-09		7611493	73583717	12	73952										
LILRB3	0	genome.wustl.edu	37	chr19	54746380	54746380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	gacagactcacctgcctgcaCgcgggtcctggggcccagac	13	16	1	2			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	19	54746380	54746380	C	T	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	13	0	0	36	15	29.41	-	-	-	T	54746380	C	T	54746380	3	4	919	1	0	0	0	0	1	0	0	0	8847	536	19	1		1	LILRB3	19	54746380	Missense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09		54746380	4382603	13	73953										
TMC2	0	genome.wustl.edu	37	chr20	2591102	2591102	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	cctgcttggaatgttttgtcCccctctgtttgaaaccatcg	8	12	1	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	2591102	2591102	C	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	1	known	missense	c.1451	p.P484H	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	63	0	0	74	53	41.73	-	-	-	A	2591102	C	A	2591102	3	1	919	1	0	0	0	0	1	0	0	0	16080	623	22	4	1497	4	TMC2	20	2591102	Missense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09		2591102	60434418	14	73954										
CRLS1	0	genome.wustl.edu	37	chr20	6017787	6017787	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	attatggccggaagactgttCaggtgataaaagactgatga	12	5	1	5			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	6017787	6017787	C	T	SNP	CRLS1	ENST00000378863	human	ensembl	69_37n	1	known	nonsense	c.889	p.Q297*	1.000	NULL	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766	54	0	0	19	29	60.42	-	-	-	T	6017787	C	T	6017787	4	4	919	1	0	0	0	0	0	1	0	0	3919	827	29	2	928	2	CRLS1	20	6017787	Nonsense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09	3426685	6017787	57007733	15	73955										
PLCG1	0	genome.wustl.edu	37	chr20	39795424	39795424	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	gacctcatcagctactatgaGaaacacccgctataccgcaa	6	14	2	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	39795424	39795424	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	1	known	silent	c.2226	p.E742	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2,prints_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	40	0	0	87	59	40.41	-	-	-	A	39795424	G	A	39795424	2	1	919	1	0	0	0	0	0	0	0	1	12109	933	33	2		2	PLCG1	20	39795424	Silent	SNP	G	TCGA-EW-A2FW-01A-11D-A17D-09	33777637	39795424	23230096	16	73956										
TUBB1	0	genome.wustl.edu	37	chr20	57597974	57597974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ggggcctcggccttgcagctGgagagaatcagcgtgtacta	15	10	1	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	57597974	57597974	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	silent	c.132	p.L44	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	25	0	0	279	48	14.68	-	-	-	A	57597974	G	A	57597974	2	1	919	1	0	0	0	0	0	0	0	1	16850	1335	47	4		4	TUBB1	20	57597974	Silent	SNP	G	TCGA-EW-A2FW-01A-11D-A17D-09	17802550	57597974	5427546	17	73957										
TUBB1	0	genome.wustl.edu	37	chr20	57598598	57598598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	acctagaacctgggacgatgGacagcattcgatctagcaaa	10	10	1	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	57598598	57598598	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	1	known	missense	c.220	p.D74N	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	63	0	0	445	88	16.51	-	-	-	A	57598598	G	A	57598598	3	1	919	1	0	0	0	0	1	0	0	0	16850	1174	41	2	230	2	TUBB1	20	57598598	Missense_Mutation	SNP	G	TCGA-EW-A2FW-01A-11D-A17D-09	624	57598598	5426922	18	73958										
SAMSN1	0	genome.wustl.edu	37	chr21	15870837	15870837	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ggttttcaatatttaattcaAtgaggtgactctcttttata	6	5	3	2			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	21	15870837	15870837	A	G	SNP	SAMSN1	ENST00000400566	human	ensembl	69_37n	-1	known	missense	c.845	p.I282T	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	85	0	0	57	46	44.66	-	-	-	G	15870837	A	G	15870837	3	3	919	1	0	0	0	0	1	0	0	0	13916	101	4	5	284	5	SAMSN1	21	15870837	Missense_Mutation	SNP	A	TCGA-EW-A2FW-01A-11D-A17D-09		15870837	32259058	19	73959										
SHROOM4	0	genome.wustl.edu	37	chrX	50378351	50378351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.15	3	0.632071105121261	1.5424739195231	NA	1.5424739195231	0.1	0.5224358974359	0	ggtggcccccattggtgcgcCgactacctcctgaggtctca	12	15	1	1			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	X	50378351	50378351	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.722	p.R241Q	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	28	0	0	19	11	36.67	-	-	-	T	50378351	C	T	50378351	3	4	919	1	0	0	0	0	1	0	0	0	14385	652	23	1	3783	1	SHROOM4	23	50378351	Missense_Mutation	SNP	C	TCGA-EW-A2FW-01A-11D-A17D-09		50378351	104892209	20	73960										
SPEN	0	genome.wustl.edu	37	chr1	16262705	16262705	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cggcccagctcacacacactCagtttcccgccgcttcctct	6	20	3	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	16262705	16262705	C	T	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	nonsense	c.9970	p.Q3324*	0.998	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	53	0	0	34	4	10.53	-	-	-	T	16262705	C	T	16262705	4	4	920	1	0	0	0	0	0	1	0	0	15129	827	29	2	10012	2	SPEN	1	16262705	Nonsense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		16262705	232987916	1	73961										
CROCC	0	genome.wustl.edu	37	chr1	17275597	17275597	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgagcaagcccctttcctctCtgggctgcagattcctcagc	9	15	2	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	17275597	17275597	C	T	SNP	CROCC	ENST00000488646	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CROCC	HGNC	ENSG00000058453	29	0	0	27	4	12.9	-	-	-	T	17275597	C	T	17275597	1	4	920	0	1	0	0	0	0	0	0	0	3923	928	32	2		2	CROCC	1	17275597	RNA	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	1012892	17275597	231975024	2	73962										
HTR1D	0	genome.wustl.edu	37	chr1	23520084	23520084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ataggatgatgagcaacaccGagggaatgtagaaggcccca	13	8	0	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	23520084	23520084	G	A	SNP	HTR1D	ENST00000314113	human	ensembl	69_37n	-1	known	missense	c.629	p.S210L	0.682	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	55	0	0	42	5	10.64	-	-	-	A	23520084	G	A	23520084	3	1	920	1	0	0	0	0	1	0	0	0	7492	1059	37	1	508	1	HTR1D	1	23520084	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	6244487	23520084	225730537	3	73963										
GUCA2B	0	genome.wustl.edu	37	chr1	42619172	42619172	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccaggagtggccgtggtcctCctgctgctgctgcagagcac	14	14	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	42619172	42619172	C	G	SNP	GUCA2B	ENST00000372581	human	ensembl	69_37n	1	known	silent	c.51	p.L17	0.331	pfam_Guanylin,pirsf_Guanylin,prints_Guanylin	pfam_Guanylin,superfamily_Guanylin,pirsf_Guanylin,prints_Guanylin	-	no_errors	GUCA2B	HGNC	ENSG00000044012	81	0	0	46	17	26.98	-	-	-	G	42619172	C	G	42619172	2	3	920	1	0	0	0	0	0	0	0	1	6943	842	30	2		2	GUCA2B	1	42619172	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	19099088	42619172	206631449	4	73964										
NFIA	0	genome.wustl.edu	37	chr1	61547540	61547541	+	RNA	INS	-	-	T													0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cgctggagagattacaatgcINStttgagccttaccgcatttc							TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	61547540	61547541	-	T	INS	NFIA	ENST00000479364	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	NFIA	HGNC	ENSG00000162599	61	0	0	42	17	28.81	-	-	-	T	61547541	-	T	61547540	6	5	920	0	1	1	1	0	0	0	0	0	10442	812	28	0		0	NFIA	1	61547540	RNA	INS	-	TCGA-EW-A3E8-01B-11D-A243-09	18928368	61547540	187703081	5	73965										
DNASE2B	0	genome.wustl.edu	37	chr1	84867704	84867704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agtgagcaactaatgaatgaCaccaagagtgttttgggaag	12	5	0	4			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	84867704	84867704	C	A	SNP	DNASE2B	ENST00000370665	human	ensembl	69_37n	1	known	missense	c.246	p.D82E	0.437	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2B	HGNC	ENSG00000137976	35	0	0	38	8	17.39	-	-	-	A	84867704	C	A	84867704	3	1	920	1	0	0	0	0	1	0	0	0	4700	477	17	4	252	4	DNASE2B	1	84867704	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	23320164	84867704	164382917	6	73966										
GBP6	0	genome.wustl.edu	37	chr1	89847524	89847524	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gaaaatcaggaattccagaaGaagttcatggtaatttgcct	9	6	2	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	89847524	89847524	G	C	SNP	GBP6	ENST00000370456	human	ensembl	69_37n	1	known	missense	c.1143	p.K381N	0.384	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP6	HGNC	ENSG00000183347	37	0	0	41	9	18	-	-	-	C	89847524	G	C	89847524	3	2	920	1	0	0	0	0	1	0	0	0	6328	933	33	2	1165	2	GBP6	1	89847524	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	4979820	89847524	159403097	7	73967										
POLR3C	0	genome.wustl.edu	37	chr1	145601595	145601595	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ggtaatctcactcattcggaGcatggttcgcacaatctcgc	9	12	3	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	145601595	145601595	G	T	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.811	p.L271I	1.000	pfam_RNA_pol_III_Rpc82_C	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	29	0	0	26	4	13.33	-	-	-	T	145601595	G	T	145601595	3	4	920	1	0	0	0	0	1	0	0	0	12304	971	34	4	829	4	POLR3C	1	145601595	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	55754071	145601595	103649026	8	73968										
SCNM1	0	genome.wustl.edu	37	chr1	151139007	151139007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aggatgaggcgctgatgcttCgggatggacggtaagagcaa	17	6	0	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	151139007	151139007	C	T	SNP	SCNM1	ENST00000368905	human	ensembl	69_37n	1	known	missense	c.112	p.R38W	0.992	NULL	NULL	-	no_errors	SCNM1	HGNC	ENSG00000163156	56	0	0	41	11	21.15	-	-	-	T	151139007	C	T	151139007	3	4	920	1	0	0	0	0	1	0	0	0	14014	875	31	1	118	1	SCNM1	1	151139007	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	5537412	151139007	98111614	9	73969										
OLFML2B	0	genome.wustl.edu	37	chr1	161953686	161953686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	atacagcaccccacagatgaCgaagcagttgccgtagaaat	9	11	0	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	161953686	161953686	C	T	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.2032	p.V678I	1.000	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	90	0	0	74	13	14.94	-	-	-	T	161953686	C	T	161953686	3	4	920	1	0	0	0	0	1	0	0	0	10931	536	19	1	224	1	OLFML2B	1	161953686	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	10814679	161953686	87296935	10	73970										
FMO4	0	genome.wustl.edu	37	chr1	171303694	171303694	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gaagaaaacattgatgttgtGatcttcactacaggatatac	8	6	2	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	171303694	171303694	G	A	SNP	FMO4	ENST00000367749	human	ensembl	69_37n	1	known	silent	c.972	p.V324	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258	61	0	0	19	14	42.42	-	-	-	A	171303694	G	A	171303694	2	1	920	1	0	0	0	0	0	0	0	1	6003	1277	45	2		2	FMO4	1	171303694	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	9350008	171303694	77946927	11	73971										
CEP350	0	genome.wustl.edu	37	chr1	179991935	179991935	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgaagatgattttgtctcctCtccagggactgggacttcga	11	9	2	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	179991935	179991935	C	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.3338	p.S1113F	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	59	0	0	24	8	25	-	-	-	T	179991935	C	T	179991935	3	4	920	1	0	0	0	0	1	0	0	0	3283	913	32	2	3384	2	CEP350	1	179991935	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	8688241	179991935	69258686	12	73972										
KDM5B	0	genome.wustl.edu	37	chr1	202700129	202700129	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ctggtaaagttcctgaatttCaggaagggatacctggagca	12	7	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	1	202700129	202700129	C	T	SNP	KDM5B	ENST00000367265	human	ensembl	69_37n	-1	known	missense	c.4084	p.E1362K	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139	50	0	0	21	6	22.22	-	-	-	T	202700129	C	T	202700129	3	4	920	1	0	0	0	0	1	0	0	0	8187	835	29	2	562	2	KDM5B	1	202700129	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	22708194	202700129	46550492	13	73973										
OTOF	0	genome.wustl.edu	37	chr2	26693475	26693475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tctcacctccttcatggtgtCaatggaggcaaagtacttgg	10	10	3	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	2	26693475	26693475	C	T	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.4009	p.D1337N	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	27	0	0	18	4	18.18	-	-	-	T	26693475	C	T	26693475	3	4	920	1	0	0	0	0	1	0	0	0	11376	826	29	2	2229	2	OTOF	2	26693475	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		26693475	216505898	14	73974										
RHOQ	0	genome.wustl.edu	37	chr2	46803734	46803734	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgaccccaaaactttagcaaGactgaatgatatgaaagaaa	7	7	0	6			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	2	46803734	46803734	G	T	SNP	RHOQ	ENST00000238738	human	ensembl	69_37n	1	known	missense	c.401	p.R134I	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729	24	0	0	14	3	17.65	-	-	-	T	46803734	G	T	46803734	3	4	920	1	0	0	0	0	1	0	0	0	13426	942	33	2	415	2	RHOQ	2	46803734	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	20110259	46803734	196395639	15	73975										
LCT	0	genome.wustl.edu	37	chr2	136594528	136594528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgctgaagtattctggcaggAaagtgggcagtggctggtga	17	5	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	2	136594528	136594528	A	G	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.212	p.F71S	0.122	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	49	0	0	33	7	17.5	-	-	-	G	136594528	A	G	136594528	3	3	920	1	0	0	0	0	1	0	0	0	8747	246	9	5	5639	5	LCT	2	136594528	Missense_Mutation	SNP	A	TCGA-EW-A3E8-01B-11D-A243-09	89790794	136594528	106604845	16	73976										
RND3	0	genome.wustl.edu	37	chr2	151326603	151326603	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gaaatccgctttgtggctctCtgtgatttgttccgcttaac	9	10	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	2	151326603	151326603	C	T	SNP	RND3	ENST00000263895	human	ensembl	69_37n	-1	known	silent	c.633	p.Q211	0.999	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963	37	0	0	29	6	17.14	-	-	-	T	151326603	C	T	151326603	2	4	920	1	0	0	0	0	0	0	0	1	13507	912	32	2		2	RND3	2	151326603	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	14732075	151326603	91872770	17	73977										
GTF3C3	0	genome.wustl.edu	37	chr2	197654048	197654048	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccatctgttcataaaggcttGatcgctcccacagataacgg	8	12	2	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	2	197654048	197654048	G	C	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	nonsense	c.773	p.S258*	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041	41	0	0	41	6	12.77	-	-	-	C	197654048	G	C	197654048	4	2	920	1	0	0	0	0	0	1	0	0	6925	1294	45	2	1939	2	GTF3C3	2	197654048	Nonsense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	46327445	197654048	45545325	18	73978										
XIRP1	0	genome.wustl.edu	37	chr3	39228407	39228407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gtcttcctgcaccagcagccCctgctggtccacatctggcc	9	18	2	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	3	39228407	39228407	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.2530	p.G844R	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	39	0	0	18	6	25	-	-	-	T	39228407	C	T	39228407	3	4	920	1	0	0	0	0	1	0	0	0	17526	623	22	4	3005	4	XIRP1	3	39228407	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		39228407	158794023	19	73979										
NKTR	0	genome.wustl.edu	37	chr3	42680623	42680623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ggagttccccagcaaaagtaGaggagacttcccctctagga	11	11	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	3	42680623	42680623	G	C	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	1	known	missense	c.3427	p.E1143Q	0.930	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	40	0	0	20	3	13.04	-	-	-	C	42680623	G	C	42680623	3	2	920	1	0	0	0	0	1	0	0	0	10520	943	33	2	3473	2	NKTR	3	42680623	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	3452216	42680623	155341807	20	73980										
STX19	0	genome.wustl.edu	37	chr3	93733952	93733952	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	atactttcctgtagtttttgGatttcatgtaggtgtctctc	8	7	2	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	3	93733952	93733952	G	A	SNP	STX19	ENST00000315099	human	ensembl	69_37n	-1	known	silent	c.162	p.I54	0.998	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750	58	0	0	39	6	13.33	-	-	-	A	93733952	G	A	93733952	2	1	920	1	0	0	0	0	0	0	0	1	15433	1164	41	2		2	STX19	3	93733952	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	51053329	93733952	104288478	21	73981										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	46	0	0	42	13	23.64	-	-	-	A	178936091	G	A	178936091	3	1	920	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	85202139	178936091	19086339	22	73982										
ZNF718	0	genome.wustl.edu	37	chr4	155278	155278	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	taaagcttttaaccaatcctCaacccttaatttacataaga	2	10	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	155278	155278	C	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	32	0	0	14	4	22.22	-	-	-	T	155278	C	T	155278	1	4	920	0	1	0	0	0	0	0	0	0	18216	838	29	2		2	ZNF718	4	155278	RNA	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		155278	190998998	23	73983										
PI4K2B	0	genome.wustl.edu	37	chr4	25278651	25278651	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cacagatcttaaaccttactCaggcattgagagacgggaag	10	9	2	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	25278651	25278651	C	T	SNP	PI4K2B	ENST00000264864	human	ensembl	69_37n	1	known	nonsense	c.1288	p.Q430*	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210	48	0	0	27	9	25	-	-	-	T	25278651	C	T	25278651	4	4	920	1	0	0	0	0	0	1	0	0	11946	827	29	2	1326	2	PI4K2B	4	25278651	Nonsense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	25123373	25278651	165875625	24	73984										
LNX1	0	genome.wustl.edu	37	chr4	54373554	54373554	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttggcaactgcactcccgctCtttgtccttcgaagaacact	7	14	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	54373554	54373554	C	G	SNP	LNX1	ENST00000263925	human	ensembl	69_37n	-1	known	missense	c.705	p.K235N	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	50	0	0	27	4	12.9	-	-	-	G	54373554	C	G	54373554	3	3	920	1	0	0	0	0	1	0	0	0	8921	912	32	2	1513	2	LNX1	4	54373554	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	29094903	54373554	136780722	25	73985										
TBCK	0	genome.wustl.edu	37	chr4	107092416	107092416	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agattctctcacacagcgttCaatgtcaatttctagataga	6	9	5	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	107092416	107092416	C	T	SNP	TBCK	ENST00000273980	human	ensembl	69_37n	-1	known	missense	c.2071	p.E691K	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_cat_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348	37	0	0	35	8	18.6	-	-	-	T	107092416	C	T	107092416	3	4	920	1	0	0	0	0	1	0	0	0	15731	835	29	2	626	2	TBCK	4	107092416	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	52718862	107092416	84061860	26	73986										
POU4F2	0	genome.wustl.edu	37	chr4	147561653	147561653	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gttcgagtccctcacactgtCccacaataatatgatcgcgc	7	14	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	147561653	147561653	C	G	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	1	known	missense	c.923	p.S308C	0.996	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	58	0	0	41	5	10.87	-	-	-	G	147561653	C	G	147561653	3	3	920	1	0	0	0	0	1	0	0	0	12352	855	30	2	929	2	POU4F2	4	147561653	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	40469237	147561653	43592623	27	73987										
MFAP3L	0	genome.wustl.edu	37	chr4	170913069	170913069	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agctcttcgatgtagcgggcGaactccatggttttgaactg	12	9	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	4	170913069	170913069	G	A	SNP	MFAP3L	ENST00000361618	human	ensembl	69_37n	-1	known	silent	c.690	p.F230	0.994	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3L	HGNC	ENSG00000198948	51	0	0	34	13	27.66	-	-	-	A	170913069	G	A	170913069	2	1	920	1	0	0	0	0	0	0	0	1	9587	1049	37	1		1	MFAP3L	4	170913069	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	23351416	170913069	20241207	28	73988										
HTR1A	0	genome.wustl.edu	37	chr5	63256619	63256619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	acaaggggtaggaccagcctCgctgggcagaggcaagtgct	16	10	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	5	63256619	63256619	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	69_37n	-1	known	missense	c.928	p.E310K	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394	29	0	0	19	6	24	-	-	-	T	63256619	C	T	63256619	3	4	920	1	0	0	0	0	1	0	0	0	7490	893	31	1	343	1	HTR1A	5	63256619	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		63256619	117658641	29	73989										
CCDC125	0	genome.wustl.edu	37	chr5	68606974	68606974	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aagaattttcaatgcttcctCtttacctctgagttgtcttt	5	9	4	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	5	68606974	68606974	C	G	SNP	CCDC125	ENST00000396496	human	ensembl	69_37n	-1	known	missense	c.424	p.E142Q	1.000	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	66	0	0	55	9	14.06	-	-	-	G	68606974	C	G	68606974	3	3	920	1	0	0	0	0	1	0	0	0	2786	922	32	2	1147	2	CCDC125	5	68606974	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	5350355	68606974	112308286	30	73990										
CDO1	0	genome.wustl.edu	37	chr5	115151972	115151972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gcccactcggtggggtcgctCtcgtaggcttccatgatggc	14	13	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	5	115151972	115151972	C	G	SNP	CDO1	ENST00000250535	human	ensembl	69_37n	-1	known	missense	c.123	p.E41D	1.000	pfam_Cys_dOase_I,superfamily_RmlC_Cupin	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	-	no_errors	CDO1	HGNC	ENSG00000129596	39	0	0	26	4	13.33	-	-	-	G	115151972	C	G	115151972	3	3	920	1	0	0	0	0	1	0	0	0	3198	912	32	2	499	2	CDO1	5	115151972	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	46544998	115151972	65763288	31	73991										
FAT2	0	genome.wustl.edu	37	chr5	150911490	150911490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gtcgatggaaaagtggccttCggctgaatccggcagagagt	15	8	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	5	150911490	150911490	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.9469	p.E3157K	0.972	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	59	0	0	44	18	29.03	-	-	-	T	150911490	C	T	150911490	3	4	920	1	0	0	0	0	1	0	0	0	5736	893	31	1	3624	1	FAT2	5	150911490	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	35759518	150911490	30003770	32	73992										
XPO5	0	genome.wustl.edu	37	chr6	43494425	43494425	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tctcacaggctcacttaccgTctccatctgctgggggagca	10	14	4	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	6	43494425	43494425	T	A	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.2981	p.D994V	0.995	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	29	0	0	35	5	12.5	-	-	-	A	43494425	T	A	43494425	3	1	920	1	0	0	0	0	1	0	0	0	17544	1667	58	5	657	5	XPO5	6	43494425	Missense_Mutation	SNP	T	TCGA-EW-A3E8-01B-11D-A243-09		43494425	127620642	33	73993										
MDN1	0	genome.wustl.edu	37	chr6	90383950	90383950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccaaaggtgatcctgtttccGcatccggcaaccagagggca	11	13	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	6	90383950	90383950	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.13120	p.R4374W	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	30	0	0	8	9	52.94	-	-	-	A	90383950	G	A	90383950	3	1	920	1	0	0	0	0	1	0	0	0	9486	1086	38	1	3766	1	MDN1	6	90383950	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	46889525	90383950	80731117	34	73994										
UTRN	0	genome.wustl.edu	37	chr6	145157645	145157645	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	acaataaacagctggagtctCagctccaccgcctccgacag	8	15	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	6	145157645	145157645	C	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	nonsense	c.10033	p.Q3345*	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	24	0	0	14	5	26.32	-	-	-	T	145157645	C	T	145157645	4	4	920	1	0	0	0	0	0	1	0	0	17200	827	29	2	10311	2	UTRN	6	145157645	Nonsense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	54773695	145157645	25957422	35	73995										
SLC22A2	0	genome.wustl.edu	37	chr6	160668273	160668273	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gcgatgtgcttaatgattctCatggcttcagcattcttatt	8	8	3	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	6	160668273	160668273	C	T	SNP	SLC22A2	ENST00000366953	human	ensembl	69_37n	-1	known	missense	c.900	p.M300I	0.230	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499	100	0	0	66	8	10.81	-	-	-	T	160668273	C	T	160668273	3	4	920	1	0	0	0	0	1	0	0	0	14540	826	29	2	795	2	SLC22A2	6	160668273	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	15510628	160668273	10446794	36	73996										
THAP5	0	genome.wustl.edu	37	chr7	108210035	108210035	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	actcgggtgaggcccctggaGaccggggccggcgacggatg	19	12	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	7	108210035	108210035	G	A	SNP	THAP5	ENST00000412935	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	THAP5	HGNC	ENSG00000177683	59	0	0	29	4	12.12	-	-	-	A	108210035	G	A	108210035	1	1	920	0	1	0	0	0	0	0	0	0	15942	957	33	2		2	THAP5	7	108210035	RNA	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		108210035	50928628	37	73997										
DOCK5	0	genome.wustl.edu	37	chr8	25198459	25198459	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cgccagttatttcttgctttCaatatgctgatggacaggcc	9	10	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	8	25198459	25198459	C	A	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.2394	p.F798L	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	65	0	0	52	7	11.86	-	-	-	A	25198459	C	A	25198459	3	1	920	1	0	0	0	0	1	0	0	0	4725	825	29	2	2484	2	DOCK5	8	25198459	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		25198459	121165563	38	73998										
EIF2C2	0	genome.wustl.edu	37	chr8	141551357	141551357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agaactggatgaggagctcgCggaccatggcggccaggtct	16	10	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	8	141551357	141551357	C	T	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.1940	p.R647H	0.998	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	44	0	0	38	8	17.39	-	-	-	T	141551357	C	T	141551357	3	4	920	1	0	0	0	0	1	0	0	0	5041	768	27	1	659	1	EIF2C2	8	141551357	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	116352898	141551357	4812665	39	73999										
NUP188	0	genome.wustl.edu	37	chr9	131762022	131762022	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cattaggcagtgccacagagGacaaggacagcatggagact	13	9	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	9	131762022	131762022	G	C	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.3781	p.D1261H	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	68	0	0	50	10	16.39	-	-	-	C	131762022	G	C	131762022	3	2	920	1	0	0	0	0	1	0	0	0	10831	1174	41	2	3915	2	NUP188	9	131762022	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		131762022	9451409	40	74000										
SETX	0	genome.wustl.edu	37	chr9	135206816	135206816	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aaacagtgtaacgctggccaGaaaggatccacactatcatc	8	11	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	9	135206816	135206816	G	A	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	silent	c.858	p.F286	1.000	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	59	0	0	51	6	10.53	-	-	-	A	135206816	G	A	135206816	2	1	920	1	0	0	0	0	0	0	0	1	14229	933	33	2		2	SETX	9	135206816	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	3444794	135206816	6006615	41	74001										
NKX2-3	0	genome.wustl.edu	37	chr10	101292921	101292921	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agcccggtcacctccaccccTttctcagtcaaagacatttt	5	16	3	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	10	101292921	101292921	T	A	SNP	NKX2-3	ENST00000344586	human	ensembl	69_37n	1	known	silent	c.33	p.P11	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-3	HGNC	ENSG00000119919	82	0	0	59	7	10.61	-	-	-	A	101292921	T	A	101292921	2	1	920	1	0	0	0	0	0	0	0	1	10523	1596	56	5		5	NKX2-3	10	101292921	Silent	SNP	T	TCGA-EW-A3E8-01B-11D-A243-09		101292921	34241826	42	74002										
DOCK1	0	genome.wustl.edu	37	chr10	129178358	129178358	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cttttcagaatttctacaaaGaaattgaaagagaagaaatg	7	4	2	5			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	10	129178358	129178358	G	C	SNP	DOCK1	ENST00000280333	human	ensembl	69_37n	1	known	missense	c.3625	p.E1209Q	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760	31	0	0	14	4	22.22	-	-	-	C	129178358	G	C	129178358	3	2	920	1	0	0	0	0	1	0	0	0	4719	943	33	2	3767	2	DOCK1	10	129178358	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	27885437	129178358	6356389	43	74003										
COPB1	0	genome.wustl.edu	37	chr11	14507916	14507916	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aaagaaatacacagtaccttGattgcagttggtgcactaga	9	7	0	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	14507916	14507916	G	C	SNP	COPB1	ENST00000249923	human	ensembl	69_37n	-1	known	missense	c.834	p.I278M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_bsu	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_bsu	-	no_errors	COPB1	HGNC	ENSG00000129083	39	0	0	46	6	11.54	-	-	-	C	14507916	G	C	14507916	3	2	920	1	0	0	0	0	1	0	0	0	3758	1280	45	2	2091	2	COPB1	11	14507916	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		14507916	120498600	44	74004										
KCNJ11	0	genome.wustl.edu	37	chr11	17408790	17408790	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	acgccttccaggatgacgatGatctcgaggtcctggtggtg	14	10	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	17408790	17408790	G	T	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	silent	c.849	p.I283	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	32	0	0	40	5	11.11	-	-	-	T	17408790	G	T	17408790	2	4	920	1	0	0	0	0	0	0	0	1	8099	1280	45	2		2	KCNJ11	11	17408790	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	2900874	17408790	117597726	45	74005										
CCDC86	0	genome.wustl.edu	37	chr11	60609811	60609811	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	caagcccaggatcaccccgtCtgcagcagggtgcaggcttg	13	14	2	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	60609811	60609811	C	T	SNP	CCDC86	ENST00000535217	human	ensembl	69_37n	1	known	missense	c.194	p.S65F	0.001	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	CCDC86	HGNC	ENSG00000110104	66	0	0	42	9	17.65	-	-	-	T	60609811	C	T	60609811	3	4	920	1	0	0	0	0	1	0	0	0	2888	912	32	2	216	2	CCDC86	11	60609811	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	43201021	60609811	74396705	46	74006										
C11orf24	0	genome.wustl.edu	37	chr11	68029901	68029901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttgtgcgagggctgtgctgaGagatggatgcccagtggcgg	19	7	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	68029901	68029901	G	C	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	missense	c.562	p.L188V	0.000	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	92	0	0	80	10	10.87	-	-	-	C	68029901	G	C	68029901	3	2	920	1	0	0	0	0	1	0	0	0	1646	942	33	2	791	2	C11orf24	11	68029901	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	7420090	68029901	66976615	47	74007										
C11orf24	0	genome.wustl.edu	37	chr11	68029945	68029945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tggacggggtccgccctgtgGaagtggacgtgggcgcgggg	22	9	0	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	68029945	68029945	G	A	SNP	C11orf24	ENST00000304271	human	ensembl	69_37n	-1	known	missense	c.518	p.S173F	0.000	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	89	0	0	77	11	12.5	-	-	-	A	68029945	G	A	68029945	3	1	920	1	0	0	0	0	1	0	0	0	1646	1174	41	2	835	2	C11orf24	11	68029945	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	44	68029945	66976571	48	74008										
DLG2	0	genome.wustl.edu	37	chr11	83877976	83877976	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttttttttcttgtacagtaaCacttacggtaatatttaagt	5	5	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	83877976	83877976	C	T	SNP	DLG2	ENST00000524941	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLG2	HGNC	ENSG00000150672	72	0	0	48	13	21.31	-	-	-	T	83877976	C	T	83877976	1	4	920	0	1	0	0	0	0	0	0	0	4591	493	17	4		4	DLG2	11	83877976	RNA	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	15848031	83877976	51128540	49	74009										
ATM	0	genome.wustl.edu	37	chr11	108114711	108114711	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gtgtacttcaggctctatctGaaaccttcacaagatgttca	7	10	5	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	108114711	108114711	G	C	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	silent	c.528	p.L176	0.996	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	41	0	0	32	5	13.51	-	-	-	C	108114711	G	C	108114711	2	2	920	1	0	0	0	0	0	0	0	1	1113	1277	45	2		2	ATM	11	108114711	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	24236735	108114711	26891805	50	74010										
IL18	0	genome.wustl.edu	37	chr11	112025729	112025729	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agcgtattgtcaataaatttCattgccacaaagttgatgca	7	7	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	11	112025729	112025729	C	T	SNP	IL18	ENST00000280357	human	ensembl	69_37n	-1	known	missense	c.48	p.M16I	0.998	pirsf_Interleukin_18	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,pirsf_Interleukin_18,prints_Interleukin_18	-	no_errors	IL18	HGNC	ENSG00000150782	63	0	0	60	7	10.45	-	-	-	T	112025729	C	T	112025729	3	4	920	1	0	0	0	0	1	0	0	0	7699	826	29	2	553	2	IL18	11	112025729	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	3911018	112025729	22980787	51	74011										
C12orf23	0	genome.wustl.edu	37	chr12	107360901	107360901	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttttttaggagatcatgaatCagacagataaaaatcaacaa	6	5	3	4			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	12	107360901	107360901	C	T	SNP	C12orf23	ENST00000280756	human	ensembl	69_37n	1	known	nonsense	c.7	p.Q3*	1.000	NULL	NULL	-	no_errors	C12orf23	HGNC	ENSG00000151135	61	0	0	44	15	25.42	-	-	-	T	107360901	C	T	107360901	4	4	920	1	0	0	0	0	0	1	0	0	1689	827	29	2	9	2	C12orf23	12	107360901	Nonsense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		107360901	26490994	52	74012										
FREM2	0	genome.wustl.edu	37	chr13	39261869	39261869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gtcccaagcgcttcccgtgcGactttggccctggcgaggtg	14	14	0	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	13	39261869	39261869	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.388	p.D130N	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	77	0	0	52	7	11.86	-	-	-	A	39261869	G	A	39261869	3	1	920	1	0	0	0	0	1	0	0	0	6094	1058	37	1	390	1	FREM2	13	39261869	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		39261869	75908009	53	74013										
NUDT15	0	genome.wustl.edu	37	chr13	48611981	48611981	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cgttgcgtcctcctggggaaGaggaaaggctcggttggagc	17	9	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	13	48611981	48611981	G	T	SNP	NUDT15	ENST00000258662	human	ensembl	69_37n	1	known	missense	c.99	p.K33N	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT15	HGNC	ENSG00000136159	82	0	0	60	8	11.76	-	-	-	T	48611981	G	T	48611981	3	4	920	1	0	0	0	0	1	0	0	0	10804	933	33	2	101	2	NUDT15	13	48611981	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	9350112	48611981	66557897	54	74014										
MYH7	0	genome.wustl.edu	37	chr14	23886162	23886162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccagctcatggatagtctttCcgctggaacccaactgctca	8	14	3	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	14	23886162	23886162	C	T	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.4559	p.G1520E	0.968	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	31	0	0	24	5	17.24	-	-	-	T	23886162	C	T	23886162	3	4	920	1	0	0	0	0	1	0	0	0	10111	855	30	2	1280	2	MYH7	14	23886162	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		23886162	83463378	55	74015										
MYH7	0	genome.wustl.edu	37	chr14	23895175	23895175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gtgcaccctcatacccacctCtgccggaagtccccgtagag	9	17	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	14	23895175	23895175	C	G	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.2160	p.Q720H	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	51	0	0	63	9	12.5	-	-	-	G	23895175	C	G	23895175	3	3	920	1	0	0	0	0	1	0	0	0	10111	912	32	2	3735	2	MYH7	14	23895175	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	9013	23895175	83454365	56	74016										
PLEKHH1	0	genome.wustl.edu	37	chr14	68029173	68029173	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgcatgaagcttcttaccttCagatgtagttcagcttcctg	8	10	3	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	14	68029173	68029173	C	T	SNP	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	silent	c.825	p.F275	0.014	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	48	0	0	39	8	17.02	-	-	-	T	68029173	C	T	68029173	2	4	920	1	0	0	0	0	0	0	0	1	12150	825	29	2		2	PLEKHH1	14	68029173	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	44133998	68029173	39320367	57	74017										
TTLL5	0	genome.wustl.edu	37	chr14	76238123	76238123	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ctgcctatctccagcatgttCaaattcgcctgatgaaagac	7	12	2	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	14	76238123	76238123	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	1	known	nonsense	c.2062	p.Q688*	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	51	0	0	43	6	12.24	-	-	-	T	76238123	C	T	76238123	4	4	920	1	0	0	0	0	0	1	0	0	16827	827	29	2	2140	2	TTLL5	14	76238123	Nonsense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	8208950	76238123	31111417	58	74018										
TP53BP1	0	genome.wustl.edu	37	chr15	43766949	43766949	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agcatcaggagaaggagcaaCaagatctgaagaattccttt	10	7	2	4			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	15	43766949	43766949	C	A	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.1102	p.V368F	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	25	0	0	23	4	14.81	-	-	-	A	43766949	C	A	43766949	3	1	920	1	0	0	0	0	1	0	0	0	16479	478	17	4	4907	4	TP53BP1	15	43766949	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		43766949	58764443	59	74019										
SLC24A1	0	genome.wustl.edu	37	chr15	65918261	65918261	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tctgggtgaaggagcagctcAgcaggaggccagtggccaag	17	9	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	15	65918261	65918261	A	C	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	1	known	missense	c.1843	p.S615R	0.767	tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	59	0	0	47	6	11.32	-	-	-	C	65918261	A	C	65918261	3	2	920	1	0	0	0	0	1	0	0	0	14554	188	7	5		5	SLC24A1	15	65918261	Missense_Mutation	SNP	A	TCGA-EW-A3E8-01B-11D-A243-09	22151312	65918261	36613131	60	74020										
IGF1R	0	genome.wustl.edu	37	chr15	99440122	99440122	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agggcaatttgctcattaacAtccgacgggggagtaagtat	12	7	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	15	99440122	99440122	A	T	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	1	known	missense	c.1090	p.I364F	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	34	0	0	38	6	13.64	-	-	-	T	99440122	A	T	99440122	3	4	920	1	0	0	0	0	1	0	0	0	7625	217	8	5	1104	5	IGF1R	15	99440122	Missense_Mutation	SNP	A	TCGA-EW-A3E8-01B-11D-A243-09	33521861	99440122	3091270	61	74021										
PIGQ	0	genome.wustl.edu	37	chr16	628900	628900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tcggacattatcgccctcctCaccttccacatctactgctt	4	17	2	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	16	628900	628900	C	T	SNP	PIGQ	ENST00000420990	human	ensembl	69_37n	1	known	missense	c.217	p.H73Y	1.000	pfam_GlcNAc_Gpi1	pfam_GlcNAc_Gpi1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PIGQ	HGNC	ENSG00000007541	87	0	0	52	7	11.67	-	-	-	T	628900	C	T	628900	3	4	920	1	0	0	0	0	1	0	0	0	11970	813	29	2	1203	2	PIGQ	16	628900	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		628900	89725853	62	74022										
PKMYT1	0	genome.wustl.edu	37	chr16	3019901	3019901	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cgccctacctgcgttgggccGggggcactgaggccgaggag	18	13	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	16	3019901	3019901	G	A	SNP	PKMYT1	ENST00000571102	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PKMYT1	HGNC	ENSG00000127564	11	0	0	8	4	33.33	-	-	-	A	3019901	G	A	3019901	1	1	920	0	1	0	0	0	0	0	0	0	12052	1131	39	1		1	PKMYT1	16	3019901	RNA	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	2391001	3019901	87334852	63	74023										
KIAA0430	0	genome.wustl.edu	37	chr16	15698049	15698049	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	accaagtatggcaggctcttCagcagttcggtcaaggtcat	11	10	4	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	16	15698049	15698049	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	silent	c.4389	p.L1463	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	50	0	0	47	9	16.07	-	-	-	T	15698049	C	T	15698049	2	4	920	1	0	0	0	0	0	0	0	1	8229	813	29	2		2	KIAA0430	16	15698049	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	12678148	15698049	74656704	64	74024										
CDH1	0	genome.wustl.edu	37	chr16	68857527	68857530	+	Splice_Site	DEL	TAAG	TAAG	-													0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tggaggaattcttgctttgcTaagtaagtccagctggcaag							TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	TAAG	TAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	16	68857527	68857530	TAAG	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site_del	c.2164+4_2164+1	e14-1	0.843:0.380:0.737:1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	35	0	0	21	6	22.22	-	-	-	-	68857530	TAAG	-	68857527	8	5	920	1	0	1	0	1	0	0	1	0	3124	1522	53	0	2212	0	CDH1	16	68857527	Splice_Site	DEL	TAAG	TCGA-EW-A3E8-01B-11D-A243-09	53159478	68857527	21497226	65	74025										
SF3B3	0	genome.wustl.edu	37	chr16	70595653	70595653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttgcctcggaacagtgtcccGagggcattgtggccatctcc	12	13	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	16	70595653	70595653	G	A	SNP	SF3B3	ENST00000302516	human	ensembl	69_37n	1	known	missense	c.2254	p.E752K	1.000	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091	73	0	0	53	9	14.52	-	-	-	A	70595653	G	A	70595653	3	1	920	1	0	0	0	0	1	0	0	0	14240	1059	37	1	2316	1	SF3B3	16	70595653	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	1738126	70595653	19759100	66	74026										
SMG6	0	genome.wustl.edu	37	chr17	2203078	2203078	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tttctttctaaatgtctcttCctttctgaacttctcctggg	5	11	5	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	17	2203078	2203078	C	T	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	silent	c.969	p.R323	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	83	0	0	69	8	10.39	-	-	-	T	2203078	C	T	2203078	2	4	920	1	0	0	0	0	0	0	0	1	14886	854	30	2		2	SMG6	17	2203078	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		2203078	78992132	67	74027										
RNF167	0	genome.wustl.edu	37	chr17	4843816	4843816	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	catctcaagcatccaatgctGaaagcggcctgattttctct	7	12	2	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	17	4843816	4843816	G	A	SNP	RNF167	ENST00000571365	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.465	-	-	-	no_errors	RNF167	HGNC	ENSG00000108523	72	0	0	31	4	11.43	-	-	-	A	4843816	G	A	4843816	1	1	920	0	1	0	0	0	0	0	0	0	13544	1305	45	2		2	RNF167	17	4843816	RNA	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	2640738	4843816	76351394	68	74028										
GPS2	0	genome.wustl.edu	37	chr17	7218277	7218277	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cctgctatggccccggctcaCcctgccgcttgcgctcccgc	10	21	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	17	7218277	7218277	C	G	SNP	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	splice_site	c.94+1	e1+1	1.000	-	-	-	no_errors	GPS2	HGNC	ENSG00000132522	131	0	0	67	30	30.93	-	-	-	G	7218277	C	G	7218277	5	3	920	1	0	0	0	0	0	0	1	0	6784	521	18	4	928	4	GPS2	17	7218277	Splice_Site	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	2374461	7218277	73976933	69	74029										
MRM1	0	genome.wustl.edu	37	chr17	34958632	34958632	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccgctgcggccccggccttgGagagaggccggggaggcgag	20	13	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	17	34958632	34958632	G	C	SNP	MRM1	ENST00000250156	human	ensembl	69_37n	1	known	missense	c.393	p.W131C	0.017	tigrfam_rRNA_MeTrfase_TrmH	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd,tigrfam_rRNA_MeTrfase_TrmH	-	no_errors	MRM1	HGNC	ENSG00000129282	47	0	0	39	5	11.36	-	-	-	C	34958632	G	C	34958632	3	2	920	1	0	0	0	0	1	0	0	0	9843	1183	41	2	395	2	MRM1	17	34958632	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	27740355	34958632	46236578	70	74030										
XYLT2	0	genome.wustl.edu	37	chr17	48433485	48433485	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tggagaacagcctggcctgtGagaccctcgtggacaacaac	12	12	0	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	17	48433485	48433485	G	A	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	1	known	missense	c.1345	p.E449K	0.999	pfam_Glyco_trans_14	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	52	0	0	41	7	14.58	-	-	-	A	48433485	G	A	48433485	3	1	920	1	0	0	0	0	1	0	0	0	17561	1291	45	2	1371	2	XYLT2	17	48433485	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	13474853	48433485	32761725	71	74031										
MIB1	0	genome.wustl.edu	37	chr18	19438554	19438554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aggacaaggataataccaatGtcaatgcagatgtgcaaaag	10	6	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	18	19438554	19438554	G	A	SNP	MIB1	ENST00000261537	human	ensembl	69_37n	1	known	missense	c.2827	p.V943I	1.000	NULL	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ	-	no_errors	MIB1	HGNC	ENSG00000101752	35	0	0	30	4	11.76	-	-	-	A	19438554	G	A	19438554	3	1	920	1	0	0	0	0	1	0	0	0	9637	1377	48	4	2905	4	MIB1	18	19438554	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		19438554	58638694	72	74032										
CELF4	0	genome.wustl.edu	37	chr18	34839144	34839144	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tttcgaggagatgacattacCgaaagggaggaacatctgca	12	7	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	18	34839144	34839144	C	A	SNP	CELF4	ENST00000361795	human	ensembl	69_37n	-1	known	missense	c.1333	p.G445C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489	30	0	0	16	5	23.81	-	-	-	A	34839144	C	A	34839144	3	1	920	1	0	0	0	0	1	0	0	0	3247	666	23	3	135	3	CELF4	18	34839144	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	15400590	34839144	43238104	73	74033										
ADNP2	0	genome.wustl.edu	37	chr18	77895478	77895478	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccaagtctggtgagaaacttGagcctgaaaaactggcagcg	12	9	1	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	18	77895478	77895478	G	C	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	missense	c.2182	p.E728Q	0.819	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	66	0	0	27	4	12.9	-	-	-	C	77895478	G	C	77895478	3	2	920	1	0	0	0	0	1	0	0	0	324	1291	45	2	2192	2	ADNP2	18	77895478	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	43056334	77895478	181770	74	74034										
ZNF529	0	genome.wustl.edu	37	chr19	37038799	37038799	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	acaaggtttcacaccagtatGaatattcagttgtaacatac	6	8	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	37038799	37038799	G	T	SNP	ZNF529	ENST00000591340	human	ensembl	69_37n	-1	known	missense	c.661	p.H221N	0.983	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF529	HGNC	ENSG00000186020	27	0	0	29	5	14.71	-	-	-	T	37038799	G	T	37038799	3	4	920	1	0	0	0	0	1	0	0	0	18066	1290	45	2	1034	2	ZNF529	19	37038799	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		37038799	22090184	75	74035										
ZNF420	0	genome.wustl.edu	37	chr19	37620968	37620968	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	caggtcaacaagatagaagtGatatttatatgagtaggaga	11	3	1	5			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	37620968	37620968	G	A	SNP	ZNF420	ENST00000304239	human	ensembl	69_37n	1	putative	missense	c.1441	p.D481N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050	63	0	0	68	8	10.53	-	-	-	A	37620968	G	A	37620968	3	1	920	1	0	0	0	0	1	0	0	0	17993	1305	45	2		2	ZNF420	19	37620968	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	582169	37620968	21508015	76	74036										
PLEKHG2	0	genome.wustl.edu	37	chr19	39914915	39914915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	aagaaggtcacctagacagcGagagcccaaccaatatccca	8	13	1	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	39914915	39914915	G	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	1	known	missense	c.3142	p.E1048K	0.382	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	65	0	0	35	4	10.26	-	-	-	A	39914915	G	A	39914915	3	1	920	1	0	0	0	0	1	0	0	0	12143	1059	37	1	3212	1	PLEKHG2	19	39914915	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	2293947	39914915	19214068	77	74037										
PPFIA3	0	genome.wustl.edu	37	chr19	49644726	49644726	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	actgaccctctggggctagcCaagctgacaggcccaggaga	13	13	1	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	49644726	49644726	C	A	SNP	PPFIA3	ENST00000334186	human	ensembl	69_37n	1	known	silent	c.2418	p.A806	0.999	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	31	0	0	18	4	18.18	-	-	-	A	49644726	C	A	49644726	2	1	920	1	0	0	0	0	0	0	0	1	12384	581	21	4		4	PPFIA3	19	49644726	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	9729811	49644726	9484257	78	74038										
SLC6A16	0	genome.wustl.edu	37	chr19	49793527	49793527	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ccgtctccgctcttgggcctGaagggaatcctatgtatgcg	12	12	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	49793527	49793527	G	C	SNP	SLC6A16	ENST00000335875	human	ensembl	69_37n	-1	known	missense	c.2064	p.F688L	0.394	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	35	0	0	17	4	19.05	-	-	-	C	49793527	G	C	49793527	3	2	920	1	0	0	0	0	1	0	0	0	14768	1281	45	2	150	2	SLC6A16	19	49793527	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	148801	49793527	9335456	79	74039										
PNKP	0	genome.wustl.edu	37	chr19	50367447	50367447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	tgcacataccttgtagccctCggcttccagctctcggagct	9	15	1	0			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	50367447	50367447	C	T	SNP	PNKP	ENST00000322344	human	ensembl	69_37n	-1	known	missense	c.625	p.E209K	0.001	pfam_PNK3P,superfamily_HAD-like_dom,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	42	0	0	27	11	28.95	-	-	-	T	50367447	C	T	50367447	3	4	920	1	0	0	0	0	1	0	0	0	12221	893	31	1	988	1	PNKP	19	50367447	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	573920	50367447	8761536	80	74040										
PTPRH	0	genome.wustl.edu	37	chr19	55718603	55718603	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agaaaacggagtcagcctctCaaccactcctccgcccagtg	8	16	2	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	19	55718603	55718603	C	G	SNP	PTPRH	ENST00000586852	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPRH	HGNC	ENSG00000080031	82	0	0	50	16	24.24	-	-	-	G	55718603	C	G	55718603	1	3	920	0	1	0	0	0	0	0	0	0	12886	841	29	2		2	PTPRH	19	55718603	RNA	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	5351156	55718603	3410380	81	74041										
NSFL1C	0	genome.wustl.edu	37	chr20	1433679	1433679	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	agggctttttcactcaccctCtgcggatagactccagaaac	8	13	3	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	20	1433679	1433679	C	T	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.650	p.R217K	1.000	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	27	0	0	20	5	20	-	-	-	T	1433679	C	T	1433679	3	4	920	1	0	0	0	0	1	0	0	0	10745	913	32	2	484	2	NSFL1C	20	1433679	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		1433679	61591841	82	74042										
SPTLC3	0	genome.wustl.edu	37	chr20	13090784	13090784	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	caaagcctagagaagctcctGagagatgctgtcatctatgg	11	9	2	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	20	13090784	13090784	G	T	SNP	SPTLC3	ENST00000399002	human	ensembl	69_37n	1	known	silent	c.852	p.L284	1.000	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC3	HGNC	ENSG00000172296	21	0	0	13	3	18.75	-	-	-	T	13090784	G	T	13090784	2	4	920	1	0	0	0	0	0	0	0	1	15216	1277	45	2		2	SPTLC3	20	13090784	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	11657105	13090784	49934736	83	74043										
GDAP1L1	0	genome.wustl.edu	37	chr20	42876092	42876092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ctcccgaggcggccagccccGcccattggcccagggagagc	14	18	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	20	42876092	42876092	G	T	SNP	GDAP1L1	ENST00000342560	human	ensembl	69_37n	1	known	missense	c.118	p.A40S	1.000	superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1L1	HGNC	ENSG00000124194	109	1	0.89	103	14	11.97	-	-	-	T	42876092	G	T	42876092	3	4	920	1	0	0	0	0	1	0	0	0	6359	1087	38	3	120	3	GDAP1L1	20	42876092	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	29785308	42876092	20149428	84	74044										
CECR2	0	genome.wustl.edu	37	chr22	18022655	18022655	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ggcaaccctgggagggcaccGgagaacagtgaagcacaaga	15	10	0	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	22	18022655	18022655	G	A	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	silent	c.2757	p.P919	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	42	0	0	31	6	16.22	-	-	-	A	18022655	G	A	18022655	2	1	920	1	0	0	0	0	0	0	0	1	3235	1103	39	1		1	CECR2	22	18022655	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09		18022655	33281911	85	74045										
MICAL3	0	genome.wustl.edu	37	chr22	18301084	18301084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	gcgtgagcatggcggagtccGaggtgttgaagctctggctg	18	8	1	2			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	22	18301084	18301084	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.4343	p.S1448L	0.999	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	31	0	0	18	4	18.18	-	-	-	A	18301084	G	A	18301084	3	1	920	1	0	0	0	0	1	0	0	0	9642	1059	37	1	1693	1	MICAL3	22	18301084	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	278429	18301084	33003482	86	74046										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31858942	31858942	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cttcacagaggctgtccgtcGccttgttctttttctccctt	7	14	3	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	22	31858942	31858942	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	nonsense	c.763	p.R255*	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	63	0	0	53	13	19.4	-	-	-	A	31858942	G	A	31858942	4	1	920	1	0	0	0	0	0	1	0	0	5072	1095	38	1	2253	1	EIF4ENIF1	22	31858942	Nonsense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	13557858	31858942	19445624	87	74047										
FAM47C	0	genome.wustl.edu	37	chrX	37026995	37026995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	ttgtgagggccaggagaagaCaactgacgaacccacggagc	14	10	0	4			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	X	37026995	37026995	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.512	p.T171I	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	72	0	0	52	20	27.78	-	-	-	T	37026995	C	T	37026995	3	4	920	1	0	0	0	0	1	0	0	0	5617	478	17	4	514	4	FAM47C	23	37026995	Missense_Mutation	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09		37026995	118243565	88	74048										
MAGEE1	0	genome.wustl.edu	37	chrX	75648839	75648839	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cccacccctggtgagggaacGagcacctccgtgccgcccac	11	19	0	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	X	75648839	75648839	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	69_37n	1	known	silent	c.516	p.T172	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934	26	0	0	15	5	25	-	-	-	A	75648839	G	A	75648839	2	1	920	1	0	0	0	0	0	0	0	1	9256	1045	37	1		1	MAGEE1	23	75648839	Silent	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	38621844	75648839	79621721	89	74049										
HTR2C	0	genome.wustl.edu	37	chrX	114082707	114082707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	taatcctattgagcatagccGtttcaattcgcggactaagg	9	9	1	1			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	X	114082707	114082707	G	A	SNP	HTR2C	ENST00000276198	human	ensembl	69_37n	1	known	missense	c.491	p.R164H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2C_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246	59	0	0	44	8	15.38	-	-	-	A	114082707	G	A	114082707	3	1	920	1	0	0	0	0	1	0	0	0	7497	1145	40	1	501	1	HTR2C	23	114082707	Missense_Mutation	SNP	G	TCGA-EW-A3E8-01B-11D-A243-09	38433868	114082707	41187853	90	74050										
FAM127A	0	genome.wustl.edu	37	chrX	134166665	134166665	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.450549450549451	41	1.93393328054615e-14	3.85033610122578	4.98220640569395	3.44457127509568	0.0121300680686879	0.16010691690864	30	cagtgggtgatcccctacatCaagaaggagagccccctcct	10	14	1	3			TCGA-EW-A3E8-01B-11D-A243-09	TCGA-EW-A3E8-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fa6274a-0c87-4648-8902-6fd01fcc8e23	2032db41-2068-4ac4-935a-36a3a8a6093b	X	134166665	134166665	C	T	SNP	FAM127A	ENST00000257013	human	ensembl	69_37n	1	novel	silent	c.252	p.I84	0.980	NULL	NULL	-	no_errors	FAM127A	HGNC	ENSG00000134590	121	0	0	68	8	10.53	-	-	-	T	134166665	C	T	134166665	2	4	920	1	0	0	0	0	0	0	0	1	5471	816	29	2		2	FAM127A	23	134166665	Silent	SNP	C	TCGA-EW-A3E8-01B-11D-A243-09	20083958	134166665	21103895	91	74051										
CHD5	0	genome.wustl.edu	37	chr1	6166527	6166527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tccagggccccggaagttggGcccaaagttgttgctgtaca	13	11	0	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	6166527	6166527	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.5785	p.P1929S	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	34	0	0	8	3	27.27	-	-	-	A	6166527	G	A	6166527	3	1	921	1	0	0	0	0	1	0	0	0	3357	1203	42	4	87	4	CHD5	1	6166527	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		6166527	243084094	1	74052										
PER3	0	genome.wustl.edu	37	chr1	7890055	7890055	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tcccatcctactgccagcgcTctgtccacaggatcgcctcc	7	19	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	50	0	0	23	4	14.81	-	-	-	A	7890055	T	A	7890055	2	1	921	1	0	0	0	0	0	0	0	1	11804	1538	54	5		5	PER3	1	7890055	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	1723528	7890055	241360566	2	74053										
UBE4B	0	genome.wustl.edu	37	chr1	10228305	10228305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tccacatcctcacgaagcagGtccagaagcccttcctcaga	7	16	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	10228305	10228305	G	T	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	1	known	missense	c.3310	p.V1104F	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	50	0	0	34	4	10.53	-	-	-	T	10228305	G	T	10228305	3	4	921	1	0	0	0	0	1	0	0	0	16980	1261	44	4	3404	4	UBE4B	1	10228305	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	2338250	10228305	239022316	3	74054										
MED18	0	genome.wustl.edu	37	chr1	28661311	28661311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	acaagattttccgcatcctgGtgccagggaacacagacagc	10	12	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	28661311	28661311	G	T	SNP	MED18	ENST00000373842	human	ensembl	69_37n	1	known	missense	c.457	p.V153L	1.000	pfam_Mediator_Med18_met/fun	pfam_Mediator_Med18_met/fun	-	no_errors	MED18	HGNC	ENSG00000130772	41	0	0	52	8	13.33	-	-	-	T	28661311	G	T	28661311	3	4	921	1	0	0	0	0	1	0	0	0	9507	1261	44	4	463	4	MED18	1	28661311	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	18433006	28661311	220589310	4	74055										
PUM1	0	genome.wustl.edu	37	chr1	31538615	31538615	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ataggctccggccccggcccCggcggtggcagcggcatgtg	17	15	0	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	31538615	31538615	C	G	SNP	PUM1	ENST00000373741	human	ensembl	69_37n	-1	putative	silent	c.18	p.P6	0.995	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	68	0	0	34	12	26.09	-	-	-	G	31538615	C	G	31538615	2	3	921	1	0	0	0	0	0	0	0	1	12908	667	23	3		3	PUM1	1	31538615	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	2877304	31538615	217712006	5	74056										
PODN	0	genome.wustl.edu	37	chr1	53544664	53544664	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cgcagccgagccctgggcccCcgtgcctgggtggacctcgc	15	18	0	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	53544664	53544664	C	T	SNP	PODN	ENST00000312553	human	ensembl	69_37n	1	known	silent	c.1626	p.P542	0.011	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348	23	0	0	10	8	44.44	-	-	-	T	53544664	C	T	53544664	2	4	921	1	0	0	0	0	0	0	0	1	12252	610	22	4		4	PODN	1	53544664	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	22006049	53544664	195705957	6	74057										
ZZZ3	0	genome.wustl.edu	37	chr1	78098298	78098298	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	atcaaggaacattgaagtttGggtatccgtatccccatttt	8	8	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	78098298	78098298	G	A	SNP	ZZZ3	ENST00000370801	human	ensembl	69_37n	-1	known	nonsense	c.742	p.Q248*	0.007	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	26	0	0	39	7	15.22	-	-	-	A	78098298	G	A	78098298	4	1	921	1	0	0	0	0	0	1	0	0	18347	1357	47	4	2013	4	ZZZ3	1	78098298	Nonsense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	24553634	78098298	171152323	7	74058										
CAPZA1	0	genome.wustl.edu	37	chr1	113212745	113212745	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aagattggcaaagaaatgcaGaatgcttaaaggctgaatgt	11	4	0	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	113212745	113212745	G	T	SNP	CAPZA1	ENST00000263168	human	ensembl	69_37n	1	known	missense	c.852	p.Q284H	1.000	NULL	pfam_WASH_F-actin_cap_alpha,prints_WASH_F-actin_cap_alpha	-	no_errors	CAPZA1	HGNC	ENSG00000116489	21	0	0	16	3	15.79	-	-	-	T	113212745	G	T	113212745	3	4	921	1	0	0	0	0	1	0	0	0	2665	933	33	2	890	2	CAPZA1	1	113212745	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	35114447	113212745	136037876	8	74059										
ETV3L	0	genome.wustl.edu	37	chr1	157069066	157069066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctgccaggcgatgacatggcGgaactcttccttctgcagca	11	13	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	157069066	157069066	G	T	SNP	ETV3L	ENST00000454449	human	ensembl	69_37n	-1	known	missense	c.163	p.R55S	1.000	pfam_Ets,smart_Ets,pfscan_Ets	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ETV3L	HGNC	ENSG00000253831	43	0	0	33	7	17.5	-	-	-	T	157069066	G	T	157069066	3	4	921	1	0	0	0	0	1	0	0	0	5317	1116	39	3	938	3	ETV3L	1	157069066	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	43856321	157069066	92181555	9	74060										
OR6Y1	0	genome.wustl.edu	37	chr1	158517370	158517370	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtagtgattgatctgaggcaTgccacagtagtgaagttgtg	14	5	1	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	158517370	158517370	T	A	SNP	OR6Y1	ENST00000302617	human	ensembl	69_37n	-1	known	missense	c.526	p.M176L	0.081	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6Y1	HGNC	ENSG00000197532	31	0	0	36	4	10	-	-	-	A	158517370	T	A	158517370	3	1	921	1	0	0	0	0	1	0	0	0	11286	1464	51	5	453	5	OR6Y1	1	158517370	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	1448304	158517370	90733251	10	74061										
SLAMF1	0	genome.wustl.edu	37	chr1	160607175	160607175	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gagacactattttgttctcgAcactgttctccagtgatttt	7	9	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	160607175	160607175	A	T	SNP	SLAMF1	ENST00000302035	human	ensembl	69_37n	-1	known	missense	c.221	p.V74D	0.037	pfam_Sig_lymph_act_molc_N	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like	-	no_errors	SLAMF1	HGNC	ENSG00000117090	55	0	0	59	13	18.06	-	-	-	T	160607175	A	T	160607175	3	4	921	1	0	0	0	0	1	0	0	0	14456	275	10	5	810	5	SLAMF1	1	160607175	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	2089805	160607175	88643446	11	74062										
NCF2	0	genome.wustl.edu	37	chr1	183536063	183536063	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcatcacattacctggggctGctgctgagggtggatccgca	14	11	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	183536063	183536063	G	T	SNP	NCF2	ENST00000367535	human	ensembl	69_37n	-1	known	missense	c.916	p.Q306K	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_TPR-1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701	50	0	0	39	34	46.58	-	-	-	T	183536063	G	T	183536063	3	4	921	1	0	0	0	0	1	0	0	0	10289	1328	46	4	692	4	NCF2	1	183536063	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	22928888	183536063	65714558	12	74063										
ASPM	0	genome.wustl.edu	37	chr1	197112244	197112244	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgactctgattctagatcctGatttagtccataattatctt	5	8	3	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	197112244	197112244	G	C	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	missense	c.1138	p.Q380E	0.001	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	28	0	0	23	6	20.69	-	-	-	C	197112244	G	C	197112244	3	2	921	1	0	0	0	0	1	0	0	0	1060	1299	45	2	9399	2	ASPM	1	197112244	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	13576181	197112244	52138377	13	74064										
NFASC	0	genome.wustl.edu	37	chr1	204991709	204991709	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tcatgttctttccttttttgCgagttattttgcattaacca	5	8	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	204991709	204991709	C	T	SNP	NFASC	ENST00000495396	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NFASC	HGNC	ENSG00000163531	51	0	0	69	17	19.77	-	-	-	T	204991709	C	T	204991709	1	4	921	0	1	0	0	0	0	0	0	0	10431	783	27	1		1	NFASC	1	204991709	RNA	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	7879465	204991709	44258912	14	74065										
GPATCH2	0	genome.wustl.edu	37	chr1	217671688	217671688	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aacttccttttggattacaaTggtccttacctggtcatgct	7	10	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	217671688	217671688	T	A	SNP	GPATCH2	ENST00000485274	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPATCH2	HGNC	ENSG00000092978	26	0	0	24	5	17.24	-	-	-	A	217671688	T	A	217671688	1	1	921	0	1	0	0	0	0	0	0	0	6641	1479	51	5		5	GPATCH2	1	217671688	RNA	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	12679979	217671688	31578933	15	74066										
OBSCN	0	genome.wustl.edu	37	chr1	228486289	228486289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctgagaccctcagagatgggGgcagatacagcctgaagcag	14	10	1	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	228486289	228486289	G	A	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	1	known	missense	c.3151	p.G1051S	0.594	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	35	0	0	32	5	13.51	-	-	-	A	228486289	G	A	228486289	3	1	921	1	0	0	0	0	1	0	0	0	10885	1247	43	4		4	OBSCN	1	228486289	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	10814601	228486289	20764332	16	74067										
C1orf101	0	genome.wustl.edu	37	chr1	244780912	244780912	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agattatcaacagttctaatGgtaaccatatattttggccc	6	8	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	244780912	244780912	G	T	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	1	known	missense	c.2572	p.G858C	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	33	0	0	26	5	16.13	-	-	-	T	244780912	G	T	244780912	3	4	921	1	0	0	0	0	1	0	0	0	1995	1348	47	4	2650	4	C1orf101	1	244780912	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	16294623	244780912	4469709	17	74068										
OR1C1	0	genome.wustl.edu	37	chr1	247921583	247921583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	atcgtcgcaatgatgagcatGttccccaaggtggtggctaa	12	9	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	1	247921583	247921583	G	T	SNP	OR1C1	ENST00000408896	human	ensembl	69_37n	-1	known	missense	c.126	p.N42K	0.904	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1C1	HGNC	ENSG00000221888	17	0	0	10	3	23.08	-	-	-	T	247921583	G	T	247921583	3	4	921	1	0	0	0	0	1	0	0	0	11025	1368	48	4	820	4	OR1C1	1	247921583	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	3140671	247921583	1329038	18	74069										
MPHOSPH10	0	genome.wustl.edu	37	chr2	71375164	71375164	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aaagttgtgtcaaatctgccAgccataaccatggaggaagt	10	8	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	71375164	71375164	A	T	SNP	MPHOSPH10	ENST00000244230	human	ensembl	69_37n	1	known	silent	c.1593	p.P531	0.136	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383	38	0	0	20	4	16.67	-	-	-	T	71375164	A	T	71375164	2	4	921	1	0	0	0	0	0	0	0	1	9797	175	7	5		5	MPHOSPH10	2	71375164	Silent	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09		71375164	171824209	19	74070										
USP39	0	genome.wustl.edu	37	chr2	85850904	85850904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttcctcattggaggatatcaCggtgtgtgtctaagagggtt	13	6	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	85850904	85850904	C	T	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.569	p.T190M	1.000	NULL	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	62	0	0	40	8	16.67	-	-	-	T	85850904	C	T	85850904	3	4	921	1	0	0	0	0	1	0	0	0	17167	550	19	1	583	1	USP39	2	85850904	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	14475740	85850904	157348469	20	74071										
ATOH8	0	genome.wustl.edu	37	chr2	85999764	85999764	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctcatcatcactcaggatacAacagcgcgagcagctggttt	9	12	4	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	85999764	85999764	A	C	SNP	ATOH8	ENST00000463422	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ATOH8	HGNC	ENSG00000168874	36	0	0	19	5	20.83	-	-	-	C	85999764	A	C	85999764	1	2	921	0	1	0	0	0	0	0	0	0	1118	145	5	5		5	ATOH8	2	85999764	RNA	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	148860	85999764	157199609	21	74072										
TSGA10	0	genome.wustl.edu	37	chr2	99695169	99695169	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgcaatattctcagatttttTatccaaacatgcttgcaggc	6	9	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	99695169	99695169	T	A	SNP	TSGA10	ENST00000355053	human	ensembl	69_37n	-1	known	nonsense	c.835	p.K279*	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951	29	0	0	29	12	29.27	-	-	-	A	99695169	T	A	99695169	4	1	921	1	0	0	0	0	0	1	0	0	16713	1763	61	5	1301	5	TSGA10	2	99695169	Nonsense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	13695405	99695169	143504204	22	74073										
GLI2	0	genome.wustl.edu	37	chr2	121708834	121708834	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgcaggccccctgccctcagCggcagccctgtcatctctga	10	18	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	121708834	121708834	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	1	known	missense	c.270	p.S90R	0.960	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	60	0	0	36	10	21.74	-	-	-	G	121708834	C	G	121708834	3	3	921	1	0	0	0	0	1	0	0	0	6490	767	27	3	280	3	GLI2	2	121708834	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	22013665	121708834	121490539	23	74074										
MYO7B	0	genome.wustl.edu	37	chr2	128387299	128387299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gggctgctggcctctgagaaCtggaccctcggccagaacga	14	13	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	128387299	128387299	C	A	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	1	known	missense	c.4626	p.N1542K	0.343	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	53	0	0	57	7	10.94	-	-	-	A	128387299	C	A	128387299	3	1	921	1	0	0	0	0	1	0	0	0	10155	564	20	4	4756	4	MYO7B	2	128387299	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	6678465	128387299	114812074	24	74075										
KIF5C	0	genome.wustl.edu	37	chr2	149799215	149799215	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgagcggtttgtgtcgagccCtgaggaagtcatggatgtaa	15	6	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	149799215	149799215	C	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	1	known	missense	c.530	p.P177H	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	31	0	0	7	4	36.36	-	-	-	A	149799215	C	A	149799215	3	1	921	1	0	0	0	0	1	0	0	0	8359	681	24	4	478	4	KIF5C	2	149799215	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	21411916	149799215	93400158	25	74076										
C2orf62	0	genome.wustl.edu	37	chr2	219232223	219232223	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gaggatatggagctctattcGaagttcctggaccggaaggt	14	7	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	219232223	219232223	G	C	SNP	C2orf62	ENST00000289388	human	ensembl	69_37n	1	known	silent	c.903	p.S301	0.001	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428	56	0	0	25	5	16.67	-	-	-	C	219232223	G	C	219232223	2	2	921	1	0	0	0	0	0	0	0	1	2201	1045	37	3		3	C2orf62	2	219232223	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	69433008	219232223	23967150	26	74077										
PLCD4	0	genome.wustl.edu	37	chr2	219494264	219494264	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ccctgaagcgggggtgccgcTgcgtggaggtggatgtatgg	20	8	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	219494264	219494264	T	G	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	1	known	missense	c.997	p.C333G	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	61	0	0	15	7	31.82	-	-	-	G	219494264	T	G	219494264	3	3	921	1	0	0	0	0	1	0	0	0	12107	1580	55	5	1023	5	PLCD4	2	219494264	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	262041	219494264	23705109	27	74078										
SLC23A3	0	genome.wustl.edu	37	chr2	220033428	220033428	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gggctacctccctgtgggcaGagagccctgccacaaccagg	13	15	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	220033428	220033428	G	C	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.644	p.S215C	0.995	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	22	0	0	25	5	16.67	-	-	-	C	220033428	G	C	220033428	3	2	921	1	0	0	0	0	1	0	0	0	14553	942	33	2	1244	2	SLC23A3	2	220033428	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	539164	220033428	23165945	28	74079										
SP100	0	genome.wustl.edu	37	chr2	231308967	231308967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gttcttagtgaactggagaaGacatttaacctgccagttct	9	8	2	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	231308967	231308967	G	A	SNP	SP100	ENST00000340126	human	ensembl	69_37n	1	known	silent	c.345	p.K115	0.690	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP100	HGNC	ENSG00000067066	57	0	0	28	7	20	-	-	-	A	231308967	G	A	231308967	2	1	921	1	0	0	0	0	0	0	0	1	15049	933	33	2		2	SP100	2	231308967	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	11275539	231308967	11890406	29	74080										
COL6A3	0	genome.wustl.edu	37	chr2	238271947	238271947	+	Missense_Mutation	SNP	C	C	A													0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agcaagttaagcctcaggggCctgtcatacataaaccctcg							TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	238271947	238271947	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.6012	p.R2004S	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	26	0	0	13	19	59.38	-	-	-	A	238271947	C	A	238271947	3	1	921	1	0	0	0	0	1	0	0	0	3731	738	26	4	3645	4	COL6A3	2	238271947	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	6962980	238271947	4927426	30	74081	518	3								
COL6A3	0	genome.wustl.edu	37	chr2	238271948	238271948	+	Missense_Mutation	SNP	C	C	A													0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcaagttaagcctcaggggcCtgtcatacataaaccctcgc							TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	238271948	238271948	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	missense	c.6011	p.R2004M	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	26	0	0	13	19	59.38	-	-	-	A	238271948	C	A	238271948	3	1	921	1	0	0	0	0	1	0	0	0	3731	681	24	4	3646	4	COL6A3	2	238271948	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	1	238271948	4927425	31	74082	518	3								
COL6A3	0	genome.wustl.edu	37	chr2	238271949	238271949	+	Silent	SNP	T	T	G													0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	caagttaagcctcaggggccTgtcatacataaaccctcgcc							TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	2	238271949	238271949	T	G	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.6010	p.R2004	0.974	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	26	0	0	13	19	59.38	-	-	-	G	238271949	T	G	238271949	2	3	921	1	0	0	0	0	0	0	0	1	3731	1579	55	5		5	COL6A3	2	238271949	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	1	238271949	4927424	32	74083	518	3								
IQSEC1	0	genome.wustl.edu	37	chr3	12963630	12963630	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cgggccccacctgaacgcctCtatgagccgctccactttct	8	18	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	12963630	12963630	C	G	SNP	IQSEC1	ENST00000273221	human	ensembl	69_37n	-1	known	missense	c.1885	p.E629Q	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC1	HGNC	ENSG00000144711	34	0	0	40	8	16.67	-	-	-	G	12963630	C	G	12963630	3	3	921	1	0	0	0	0	1	0	0	0	7871	922	32	2	1591	2	IQSEC1	3	12963630	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09		12963630	185058800	33	74084										
OXSM	0	genome.wustl.edu	37	chr3	25831376	25831376	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tcgcgttattggcaggtcctCgattatcggcgagtcactga	12	10	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	25831376	25831376	C	A	SNP	OXSM	ENST00000464688	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	OXSM	HGNC	ENSG00000151093	24	0	0	23	5	17.86	-	-	-	A	25831376	C	A	25831376	1	1	921	0	1	0	0	0	0	0	0	0	11408	899	31	3		3	OXSM	3	25831376	RNA	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	12867746	25831376	172191054	34	74085										
LYZL4	0	genome.wustl.edu	37	chr3	42448452	42448452	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgtgttctcgtagatggccaTggggttgaacttgctctcga	13	8	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	42448452	42448452	T	C	SNP	LYZL4	ENST00000287748	human	ensembl	69_37n	-1	known	missense	c.178	p.M60V	0.074	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL4	HGNC	ENSG00000157093	46	0	0	52	29	35.8	-	-	-	C	42448452	T	C	42448452	3	2	921	1	0	0	0	0	1	0	0	0	9200	1464	51	5	274	5	LYZL4	3	42448452	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	16617076	42448452	155573978	35	74086										
ALS2CL	0	genome.wustl.edu	37	chr3	46729146	46729146	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cttctggaaggcctgcaccaCcatgcagcttgtgtaggact	11	12	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	46729146	46729146	C	A	SNP	ALS2CL	ENST00000318962	human	ensembl	69_37n	-1	known	missense	c.331	p.V111L	0.862	superfamily_DH-domain	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038	39	0	0	26	7	21.21	-	-	-	A	46729146	C	A	46729146	3	1	921	1	0	0	0	0	1	0	0	0	551	507	18	4	2622	4	ALS2CL	3	46729146	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	4280694	46729146	151293284	36	74087										
PRSS50	0	genome.wustl.edu	37	chr3	46754418	46754418	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aacttctccctgtgggtgtcCtccgcacacatcatctggga	9	14	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	46754418	46754418	C	T	SNP	PRSS50	ENST00000315170	human	ensembl	69_37n	-1	known	silent	c.894	p.E298	0.072	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS50	HGNC	ENSG00000206549	54	0	0	55	8	12.7	-	-	-	T	46754418	C	T	46754418	2	4	921	1	0	0	0	0	0	0	0	1	12711	680	24	4		4	PRSS50	3	46754418	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	25272	46754418	151268012	37	74088										
RNF123	0	genome.wustl.edu	37	chr3	49742109	49742109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttgcttccaaagccaacattGtgatcgacccactggagctc	8	13	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	49742109	49742109	G	T	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	1	known	missense	c.1879	p.V627L	0.977	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	33	0	0	12	8	40	-	-	-	T	49742109	G	T	49742109	3	4	921	1	0	0	0	0	1	0	0	0	13519	1377	48	4	1961	4	RNF123	3	49742109	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	2987691	49742109	148280321	38	74089										
COL6A6	0	genome.wustl.edu	37	chr3	130317219	130317219	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctatttttagggagctcctgGagttgacagtagcatagaag	12	6	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	130317219	130317219	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	missense	c.4544	p.G1515V	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	50	0	0	31	7	18.42	-	-	-	T	130317219	G	T	130317219	3	4	921	1	0	0	0	0	1	0	0	0	3733	1174	41	2	4614	2	COL6A6	3	130317219	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	80575110	130317219	67705211	39	74090										
NMD3	0	genome.wustl.edu	37	chr3	160952962	160952962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	acagttaattctgaaatatgGaatgcatcagaatacacttc	6	7	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	160952962	160952962	G	T	SNP	NMD3	ENST00000351193	human	ensembl	69_37n	1	known	missense	c.539	p.G180V	1.000	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251	58	0	0	44	10	18.52	-	-	-	T	160952962	G	T	160952962	3	4	921	1	0	0	0	0	1	0	0	0	10560	1174	41	2	561	2	NMD3	3	160952962	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	30635743	160952962	37069468	40	74091										
MECOM	0	genome.wustl.edu	37	chr3	169099259	169099259	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gctggctactccatctgcatCtggcatttcttccaaaggta	8	12	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	3	169099259	169099259	C	G	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	missense	c.91	p.D31H	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	52	0	0	61	7	10.29	-	-	-	G	169099259	C	G	169099259	3	3	921	1	0	0	0	0	1	0	0	0	9493	913	32	2	3702	2	MECOM	3	169099259	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	8146297	169099259	28923171	41	74092										
RGS12	0	genome.wustl.edu	37	chr4	3344159	3344159	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gccagttatttcctgcgccgGagttggttgggtcttcagac	13	10	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	3344159	3344159	G	T	SNP	RGS12	ENST00000513784	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RGS12	HGNC	ENSG00000159788	39	0	0	27	4	12.9	-	-	-	T	3344159	G	T	3344159	1	4	921	0	1	0	0	0	0	0	0	0	13379	1189	41	2		2	RGS12	4	3344159	RNA	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		3344159	187810117	42	74093										
C4orf50	0	genome.wustl.edu	37	chr4	5966798	5966798	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgctggccactccggctcggGaataggccaggactctgaag	14	12	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	5966798	5966798	G	C	SNP	C4orf50	ENST00000531445	human	ensembl	69_37n	-1	known	missense	c.1954	p.P652A	0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	28	0	0	9	9	50	-	-	-	C	5966798	G	C	5966798	3	2	921	1	0	0	0	0	1	0	0	0	2297	1174	41	2	306	2	C4orf50	4	5966798	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	2622639	5966798	185187478	43	74094										
MAN2B2	0	genome.wustl.edu	37	chr4	6598859	6598859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gaaccattccaggcctggacGggcttctacacgtcccgcag	11	15	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	6598859	6598859	G	A	SNP	MAN2B2	ENST00000505907	human	ensembl	69_37n	1	known	missense	c.1073	p.R358Q	0.040	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN2B2	HGNC	ENSG00000013288	83	0	0	71	10	12.35	-	-	-	A	6598859	G	A	6598859	3	1	921	1	0	0	0	0	1	0	0	0	9288	1103	39	1	1107	1	MAN2B2	4	6598859	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	632061	6598859	184555417	44	74095										
CWH43	0	genome.wustl.edu	37	chr4	48996814	48996814	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtgagtgggcatccacatccAgggccagatcctaacccatt	10	13	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	48996814	48996814	A	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	silent	c.690	p.P230	0.188	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	79	0	0	46	29	38.67	-	-	-	G	48996814	A	G	48996814	2	3	921	1	0	0	0	0	0	0	0	1	4104	175	7	5		5	CWH43	4	48996814	Silent	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	42397955	48996814	142157462	45	74096										
CSN1S1	0	genome.wustl.edu	37	chr4	70810696	70810696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	actgctcatgaaaattatgaAaaaaataacgtcatgctaca	5	7	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	70810696	70810696	A	C	SNP	CSN1S1	ENST00000246891	human	ensembl	69_37n	1	known	missense	c.531	p.E177D	0.000	NULL	NULL	-	no_errors	CSN1S1	HGNC	ENSG00000126545	69	0	0	28	15	34.88	-	-	-	C	70810696	A	C	70810696	3	2	921	1	0	0	0	0	1	0	0	0	3979	11	1	5	585	5	CSN1S1	4	70810696	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	21813882	70810696	120343580	46	74097										
SLC4A4	0	genome.wustl.edu	37	chr4	72102346	72102346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttccttcctcaagcatgtgtGtgatgaagaagaagtagaag	11	6	1	5			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	72102346	72102346	G	T	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	1	known	missense	c.53	p.C18F	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	34	0	0	9	3	25	-	-	-	T	72102346	G	T	72102346	3	4	921	1	0	0	0	0	1	0	0	0	14745	1377	48	4	55	4	SLC4A4	4	72102346	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	1291650	72102346	119051930	47	74098										
PLA2G12A	0	genome.wustl.edu	37	chr4	110638792	110638792	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aattcttcatcacagtcattCttgcttttgccacaggtctc	5	12	6	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	110638792	110638792	C	G	SNP	PLA2G12A	ENST00000243501	human	ensembl	69_37n	-1	known	missense	c.363	p.K121N	1.000	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2	-	no_errors	PLA2G12A	HGNC	ENSG00000123739	53	0	0	34	6	15	-	-	-	G	110638792	C	G	110638792	3	3	921	1	0	0	0	0	1	0	0	0	12064	912	32	2	214	2	PLA2G12A	4	110638792	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	38536446	110638792	80515484	48	74099										
PCDH10	0	genome.wustl.edu	37	chr4	134072729	134072729	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtgactgaaaacaacgtgccTggcgcctacatctacgcggt	11	12	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	134072729	134072729	T	C	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	1	known	silent	c.1434	p.P478	0.007	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	19	0	0	15	6	28.57	-	-	-	C	134072729	T	C	134072729	2	2	921	1	0	0	0	0	0	0	0	1	11580	1567	55	5		5	PCDH10	4	134072729	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	23433937	134072729	57081547	49	74100										
INPP4B	0	genome.wustl.edu	37	chr4	143007327	143007327	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agccacataatttctacattCtttctttttttggattggat	5	7	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	143007327	143007327	C	G	SNP	INPP4B	ENST00000509777	human	ensembl	69_37n	-1	known	missense	c.2457	p.K819N	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	INPP4B	HGNC	ENSG00000109452	73	0	0	44	8	15.38	-	-	-	G	143007327	C	G	143007327	3	3	921	1	0	0	0	0	1	0	0	0	7807	912	32	2	329	2	INPP4B	4	143007327	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	8934598	143007327	48146949	50	74101										
HHIP	0	genome.wustl.edu	37	chr4	145655921	145655921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgcctgaggaatgcagagccAcggtacaacctgcacagaca	11	12	0	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	145655921	145655921	A	G	SNP	HHIP	ENST00000296575	human	ensembl	69_37n	1	known	missense	c.1789	p.T597A	0.001	NULL	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EGF-like,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161	36	0	0	26	5	16.13	-	-	-	G	145655921	A	G	145655921	3	3	921	1	0	0	0	0	1	0	0	0	7143	159	6	5	1835	5	HHIP	4	145655921	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	2648594	145655921	45498355	51	74102										
HPGD	0	genome.wustl.edu	37	chr4	175414428	175414428	+	Frame_Shift_Del	DEL	T	T	-													0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	caaagcctggacaaatggcaTtcagtctcacaccactgttc							TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	175414428	175414428	T	-	DEL	HPGD	ENST00000296522	human	ensembl	69_37n	-1	known	frame_shift_del	c.536	p.N179fs	1.000	prints_Glc/ribitol_DH,prints_ADH_insect,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_ADH_insect,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HPGD	HGNC	ENSG00000164120	54	0	0	10	2	16.67	-	-	-	-	175414428	T	-	175414428	7	5	921	1	0	1	0	1	0	0	0	0	7385	1493	52	0	272	0	HPGD	4	175414428	Frame_Shift_Del	DEL	T	TCGA-EW-A3U0-01A-11D-A228-09	29758507	175414428	15739848	52	74103										
FAT1	0	genome.wustl.edu	37	chr4	187539186	187539186	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttcaatgacttccacactttGtgactgatccaggctataca	6	11	1	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	4	187539186	187539186	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	nonsense	c.8554	p.Q2852*	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	52	0	0	21	12	36.36	-	-	-	A	187539186	G	A	187539186	4	1	921	1	0	0	0	0	0	1	0	0	5735	1386	48	4	5284	4	FAT1	4	187539186	Nonsense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	12124758	187539186	3615090	53	74104										
PARP8	0	genome.wustl.edu	37	chr5	50090981	50090981	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aagtcgcatagactattgacTcgatcttgttctggagatcc	9	9	2	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	50090981	50090981	T	A	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	silent	c.1158	p.T386	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	32	0	0	24	7	22.58	-	-	-	A	50090981	T	A	50090981	2	1	921	1	0	0	0	0	0	0	0	1	11538	1538	54	5		5	PARP8	5	50090981	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09		50090981	130824279	54	74105										
BTF3	0	genome.wustl.edu	37	chr5	72798898	72798898	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aaaccagcttggtgcggataGtctgactagtttaaggagac	12	7	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	72798898	72798898	G	C	SNP	BTF3	ENST00000380591	human	ensembl	69_37n	1	known	missense	c.473	p.S158T	1.000	NULL	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	BTF3	HGNC	ENSG00000145741	43	0	0	24	8	25	-	-	-	C	72798898	G	C	72798898	3	2	921	1	0	0	0	0	1	0	0	0	1560	1029	36	4	487	4	BTF3	5	72798898	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	22707917	72798898	108116362	55	74106										
IQGAP2	0	genome.wustl.edu	37	chr5	75871577	75871577	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aacataccaagaatgatataTtgcattcacgcactgaggta	7	8	1	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	75871577	75871577	T	C	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	silent	c.441	p.Y147	0.999	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	43	0	0	21	7	25	-	-	-	C	75871577	T	C	75871577	2	2	921	1	0	0	0	0	0	0	0	1	7869	1500	52	5		5	IQGAP2	5	75871577	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	3072679	75871577	105043683	56	74107										
ELL2	0	genome.wustl.edu	37	chr5	95234410	95234410	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcagatttttcactggtgggAttcaaatgaccatttagtgt	10	6	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	95234410	95234410	A	T	SNP	ELL2	ENST00000237853	human	ensembl	69_37n	-1	known	missense	c.1059	p.N353K	1.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	83	0	0	29	8	21.62	-	-	-	T	95234410	A	T	95234410	3	4	921	1	0	0	0	0	1	0	0	0	5100	330	12	5	883	5	ELL2	5	95234410	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	19362833	95234410	85680850	57	74108										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720608	140720608	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cccaacgattcggacctcacTctgtacctggtggtggcggt	12	13	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	140720608	140720608	T	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	silent	c.2070	p.T690	0.018	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	106	0	0	72	16	18.18	-	-	-	C	140720608	T	C	140720608	2	2	921	1	0	0	0	0	0	0	0	1	11627	1538	54	5		5	PCDHGA2	5	140720608	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	45486198	140720608	40194652	58	74109										
PCDH1	0	genome.wustl.edu	37	chr5	141243274	141243274	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tcccgctgtctgcagtagcgCacaagaaccgccagggcgat	12	14	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	141243274	141243274	C	G	SNP	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	silent	c.2622	p.V874	0.994	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	67	0	0	38	8	17.39	-	-	-	G	141243274	C	G	141243274	2	3	921	1	0	0	0	0	0	0	0	1	11579	697	25	4		4	PCDH1	5	141243274	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	522666	141243274	39671986	59	74110										
AGXT2L2	0	genome.wustl.edu	37	chr5	177656992	177656992	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gctccggcagggtctctgacAgcctctgcgcatagtccacg	12	15	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	5	177656992	177656992	A	T	SNP	AGXT2L2	ENST00000308158	human	ensembl	69_37n	-1	known	missense	c.287	p.L96Q	0.998	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L2	HGNC	ENSG00000175309	40	0	0	25	4	13.79	-	-	-	T	177656992	A	T	177656992	3	4	921	1	0	0	0	0	1	0	0	0	407	188	7	5	1105	5	AGXT2L2	5	177656992	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	36413718	177656992	3258268	60	74111										
SLC17A4	0	genome.wustl.edu	37	chr6	25776936	25776936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctcagactcatcaccatcagGaaactcttcactgccattgg	6	14	6	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	25776936	25776936	G	T	SNP	SLC17A4	ENST00000377905	human	ensembl	69_37n	1	known	missense	c.1101	p.R367S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039	32	0	0	39	8	17.02	-	-	-	T	25776936	G	T	25776936	3	4	921	1	0	0	0	0	1	0	0	0	14508	1165	41	2	1131	2	SLC17A4	6	25776936	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		25776936	145338131	61	74112										
OR2B2	0	genome.wustl.edu	37	chr6	27879224	27879224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctttacctctttgttcctaaGtgtatatataaggggattca	7	7	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	27879224	27879224	G	A	SNP	OR2B2	ENST00000303324	human	ensembl	69_37n	-1	known	missense	c.874	p.L292F	0.940	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131	46	0	0	34	7	17.07	-	-	-	A	27879224	G	A	27879224	3	1	921	1	0	0	0	0	1	0	0	0	11062	1029	36	4	203	4	OR2B2	6	27879224	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	2102288	27879224	143235843	62	74113										
EHMT2	0	genome.wustl.edu	37	chr6	31855581	31855581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgactcctggatgaccagggCcttttccagggcctcccggc	12	15	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	31855581	31855581	C	T	SNP	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	missense	c.2074	p.A692T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	45	0	0	26	4	13.33	-	-	-	T	31855581	C	T	31855581	3	4	921	1	0	0	0	0	1	0	0	0	5019	739	26	4	1789	4	EHMT2	6	31855581	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	3976357	31855581	139259486	63	74114										
TCTE1	0	genome.wustl.edu	37	chr6	44254202	44254202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcggtcacagccagtggtagGtcaggggacaggtggttcag	18	8	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	44254202	44254202	G	T	SNP	TCTE1	ENST00000371505	human	ensembl	69_37n	-1	known	missense	c.345	p.D115E	0.855	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221	66	0	0	56	16	22.22	-	-	-	T	44254202	G	T	44254202	3	4	921	1	0	0	0	0	1	0	0	0	15812	1252	44	4	1172	4	TCTE1	6	44254202	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	12398621	44254202	126860865	64	74115										
TINAG	0	genome.wustl.edu	37	chr6	54254718	54254718	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aactgacgagttctgatgaaCcataacatatcattaaattt	5	7	2	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	54254718	54254718	C	G	SNP	TINAG	ENST00000259782	human	ensembl	69_37n	1	known	missense	c.1426	p.P476A	0.994	NULL	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251	43	0	0	31	7	18.42	-	-	-	G	54254718	C	G	54254718	3	3	921	1	0	0	0	0	1	0	0	0	16016	507	18	4	1468	4	TINAG	6	54254718	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	10000516	54254718	116860349	65	74116										
NT5E	0	genome.wustl.edu	37	chr6	86195080	86195080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctaggctatctgaagatcgaGtttgatgaaagaggaaacgt	12	5	1	5			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	86195080	86195080	G	A	SNP	NT5E	ENST00000416334	human	ensembl	69_37n	1	known	missense	c.173	p.S58N	0.840	NULL	pfam_5'-Nucleotdase_C,superfamily_5'-Nucleotdase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NT5E	HGNC	ENSG00000135318	45	0	0	37	8	17.78	-	-	-	A	86195080	G	A	86195080	3	1	921	1	0	0	0	0	1	0	0	0	10766	1020	36	4	893	4	NT5E	6	86195080	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	31940362	86195080	84919987	66	74117										
ROS1	0	genome.wustl.edu	37	chr6	117700254	117700254	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agaacagctgtgtacaggtgAatacattgactgtcttgaac	10	7	1	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	117700254	117700254	A	C	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.2565	p.I855M	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	37	0	0	25	32	56.14	-	-	-	C	117700254	A	C	117700254	3	2	921	1	0	0	0	0	1	0	0	0	13617	242	9	5	4586	5	ROS1	6	117700254	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	31505174	117700254	53414813	67	74118										
MRPL18	0	genome.wustl.edu	37	chr6	160212106	160212106	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tggagcttttatctgtagccAggaaagagcggggctggcgg	17	7	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	6	160212106	160212106	A	G	SNP	MRPL18	ENST00000367034	human	ensembl	69_37n	1	known	missense	c.187	p.R63G	0.969	NULL	pfam_Ribosomal_L18/L5	-	no_errors	MRPL18	HGNC	ENSG00000112110	66	0	0	29	15	34.09	-	-	-	G	160212106	A	G	160212106	3	3	921	1	0	0	0	0	1	0	0	0	9855	179	7	5	193	5	MRPL18	6	160212106	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	42511852	160212106	10902961	68	74119										
FBXL18	0	genome.wustl.edu	37	chr7	5529775	5529775	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ggcgcccagtggctcgagacGtcctggctgatggctcttct	14	13	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	7	5529775	5529775	G	C	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.2069	p.T690R	0.001	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	29	0	0	15	6	28.57	-	-	-	C	5529775	G	C	5529775	3	2	921	1	0	0	0	0	1	0	0	0	5760	1160	40	3		3	FBXL18	7	5529775	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		5529775	153608888	69	74120										
CLIP2	0	genome.wustl.edu	37	chr7	73731953	73731953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	catgggccggacatctactgGgtcagcttcatcctcggcgg	13	13	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	7	73731953	73731953	G	T	SNP	CLIP2	ENST00000223398	human	ensembl	69_37n	1	known	missense	c.77	p.G26V	0.265	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	73	0	0	38	10	20.83	-	-	-	T	73731953	G	T	73731953	3	4	921	1	0	0	0	0	1	0	0	0	3563	1232	43	4	79	4	CLIP2	7	73731953	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	68202178	73731953	85406710	70	74121										
LAMB1	0	genome.wustl.edu	37	chr7	107564469	107564469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aacggacttctccttccagtCttgctaattcttgagcttta	6	11	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	7	107564469	107564469	C	G	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.5288	p.R1763T	0.054	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	50	0	0	31	5	13.89	-	-	-	G	107564469	C	G	107564469	3	3	921	1	0	0	0	0	1	0	0	0	8664	913	32	2	76	2	LAMB1	7	107564469	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	33832516	107564469	51574194	71	74122										
DOCK4	0	genome.wustl.edu	37	chr7	111368358	111368358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gagagaccttgcggggcaggGgcctgggccgcgggccgggg	23	11	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	7	111368358	111368358	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.5900	p.P1967L	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	26	0	0	12	3	20	-	-	-	A	111368358	G	A	111368358	3	1	921	1	0	0	0	0	1	0	0	0	4724	1232	43	4	31	4	DOCK4	7	111368358	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	3803889	111368358	47770305	72	74123										
KCNU1	0	genome.wustl.edu	37	chr8	36697999	36697999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aggttatgcctaaacagaccTggaagaaacacttcttgaat	8	8	1	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	8	36697999	36697999	T	A	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	1	known	missense	c.1537	p.W513R	0.968	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	54	0	0	19	11	36.67	-	-	-	A	36697999	T	A	36697999	3	1	921	1	0	0	0	0	1	0	0	0	8147	1580	55	5	1595	5	KCNU1	8	36697999	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09		36697999	109666023	73	74124										
TRPA1	0	genome.wustl.edu	37	chr8	72975065	72975065	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctatttgtgcaccattgtccAggcacattttgatcatttcc	6	11	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	8	72975065	72975065	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	missense	c.776	p.L259P	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	70	0	0	24	8	25	-	-	-	G	72975065	A	G	72975065	3	3	921	1	0	0	0	0	1	0	0	0	16673	188	7	5	2671	5	TRPA1	8	72975065	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	36277066	72975065	73388957	74	74125										
EBAG9	0	genome.wustl.edu	37	chr8	110575711	110575711	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cctacattaaccaatcagtaAagatagagagagtgagtctg	9	7	2	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	8	110575711	110575711	A	C	SNP	EBAG9	ENST00000531677	human	ensembl	69_37n	1	novel	missense	c.607	p.K203Q	0.000	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654	77	0	0	37	22	37.29	-	-	-	C	110575711	A	C	110575711	3	2	921	1	0	0	0	0	1	0	0	0	4914	29	1	5		5	EBAG9	8	110575711	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	37600646	110575711	35788311	75	74126										
KIF27	0	genome.wustl.edu	37	chr9	86485475	86485475	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aaacgaaccttttctcctttTcaagttacatgcatcaaggt	5	10	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	9	86485475	86485475	T	A	SNP	KIF27	ENST00000297814	human	ensembl	69_37n	-1	known	nonsense	c.2716	p.K906*	0.025	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	69	0	0	43	29	40.28	-	-	-	A	86485475	T	A	86485475	4	1	921	1	0	0	0	0	0	1	0	0	8348	1792	62	5	1517	5	KIF27	9	86485475	Nonsense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09		86485475	54727956	76	74127										
GARNL3	0	genome.wustl.edu	37	chr9	130083004	130083004	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tctatttcagtgccatgaatCtggacaaatttgagaaaggc	9	7	3	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	9	130083004	130083004	C	G	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	1	known	missense	c.514	p.L172V	1.000	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	36	0	0	17	7	29.17	-	-	-	G	130083004	C	G	130083004	3	3	921	1	0	0	0	0	1	0	0	0	6291	912	32	2	536	2	GARNL3	9	130083004	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	43597529	130083004	11130427	77	74128										
CCDC3	0	genome.wustl.edu	37	chr10	13043387	13043387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ggcgtggtactgccagggcaGgtggttgtagaggccgggcg	21	8	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	13043387	13043387	G	T	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	missense	c.184	p.L62M	1.000	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	42	0	0	41	12	22.64	-	-	-	T	13043387	G	T	13043387	3	4	921	1	0	0	0	0	1	0	0	0	2830	991	35	4	640	4	CCDC3	10	13043387	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		13043387	122491360	78	74129										
MTPAP	0	genome.wustl.edu	37	chr10	30662734	30662734	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttcagtgacttctaaagggaGagcctgatgacaagtggctg	13	7	2	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	30662734	30662734	G	C	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	23	0	0	14	4	22.22	-	-	-	C	30662734	G	C	30662734	1	2	921	0	1	0	0	0	0	0	0	0	10028	957	33	2		2	MTPAP	10	30662734	RNA	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	17619347	30662734	104872013	79	74130										
NODAL	0	genome.wustl.edu	37	chr10	72192733	72192733	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cacgatcatgtctttatggtGatctaggagcactctgccat	9	10	4	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	72192733	72192733	G	T	SNP	NODAL	ENST00000287139	human	ensembl	69_37n	-1	known	missense	c.1003	p.H335N	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	NODAL	HGNC	ENSG00000156574	31	0	0	16	5	23.81	-	-	-	T	72192733	G	T	72192733	3	4	921	1	0	0	0	0	1	0	0	0	10590	1290	45	2	44	2	NODAL	10	72192733	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	41529999	72192733	63342014	80	74131										
KCNMA1	0	genome.wustl.edu	37	chr10	78704719	78704719	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aatcagcccgacttaatggcGtaccctttggcatagaggaa	10	10	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	78704719	78704719	G	T	SNP	KCNMA1	ENST00000372421	human	ensembl	69_37n	-1	known	nonsense	c.2505	p.Y835*	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNMA1	HGNC	ENSG00000156113	29	0	0	16	4	20	-	-	-	T	78704719	G	T	78704719	4	4	921	1	0	0	0	0	0	1	0	0	8127	1145	40	3	1049	3	KCNMA1	10	78704719	Nonsense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	6511986	78704719	56830028	81	74132										
CDHR1	0	genome.wustl.edu	37	chr10	85968097	85968097	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ccaccccagggagagatcctGcggggcctcaagatcaccgt	12	15	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	85968097	85968097	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	69_37n	1	known	silent	c.1131	p.L377	0.780	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	17	0	0	12	7	36.84	-	-	-	A	85968097	G	A	85968097	2	1	921	1	0	0	0	0	0	0	0	1	3147	1306	46	4		4	CDHR1	10	85968097	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	7263378	85968097	49566650	82	74133										
C10orf116	0	genome.wustl.edu	37	chr10	88728307	88728307	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agataccccgaagccatggcAagcaagggcttgcaggacct	12	12	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	88728307	88728307	A	T	SNP	C10orf116	ENST00000372013	human	ensembl	69_37n	1	known	silent	c.6	p.A2	1.000	NULL	NULL	-	no_errors	C10orf116	HGNC	ENSG00000148671	40	0	0	35	6	14.63	-	-	-	T	88728307	A	T	88728307	2	4	921	1	0	0	0	0	0	0	0	1	1596	117	5	5		5	C10orf116	10	88728307	Silent	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	2760210	88728307	46806440	83	74134										
HSPA12A	0	genome.wustl.edu	37	chr10	118460472	118460472	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	accccagtggtgtgcagcttCatcttgaacttctccaggta	9	12	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	10	118460472	118460472	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	missense	c.423	p.M141I	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	38	0	0	31	16	34.04	-	-	-	T	118460472	C	T	118460472	3	4	921	1	0	0	0	0	1	0	0	0	7457	826	29	2	1640	2	HSPA12A	10	118460472	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	29732165	118460472	17074275	84	74135										
ARNTL	0	genome.wustl.edu	37	chr11	13381920	13381920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aatccatacacagaagcaaaCtacaaaccaacttttctatc	2	12	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	13381920	13381920	C	T	SNP	ARNTL	ENST00000403290	human	ensembl	69_37n	1	known	silent	c.408	p.N136	1.000	superfamily_HLH_DNA-bd	pfam_PAS_fold,pfam_PAS_fold_3,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794	37	0	0	18	6	25	-	-	-	T	13381920	C	T	13381920	2	4	921	1	0	0	0	0	0	0	0	1	971	564	20	4		4	ARNTL	11	13381920	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09		13381920	121624596	85	74136										
PDE3B	0	genome.wustl.edu	37	chr11	14808117	14808117	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agtattagtagcttaatgggTgctttctcaggttcctgtag	11	6	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	14808117	14808117	T	C	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	1	known	silent	c.1164	p.G388	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	63	0	0	33	9	21.43	-	-	-	C	14808117	T	C	14808117	2	2	921	1	0	0	0	0	0	0	0	1	11711	1683	59	5		5	PDE3B	11	14808117	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	1426197	14808117	120198399	86	74137										
OR4A16	0	genome.wustl.edu	37	chr11	55111386	55111386	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gaggcataaagccctgcctaCctgcatctcccacatcattg	7	15	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	55111386	55111386	C	A	SNP	OR4A16	ENST00000314721	human	ensembl	69_37n	1	known	missense	c.710	p.T237N	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961	68	0	0	43	7	14	-	-	-	A	55111386	C	A	55111386	3	1	921	1	0	0	0	0	1	0	0	0	11114	507	18	4	712	4	OR4A16	11	55111386	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	40303269	55111386	79895130	87	74138										
OR6Q1	0	genome.wustl.edu	37	chr11	57798717	57798717	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tggtggcaagaatatctcttAtgctgattgcctatcccagc	9	10	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	57798717	57798717	A	T	SNP	OR6Q1	ENST00000302622	human	ensembl	69_37n	1	known	missense	c.293	p.Y98F	0.100	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6Q1	HGNC	ENSG00000172381	66	0	0	58	10	14.71	-	-	-	T	57798717	A	T	57798717	3	4	921	1	0	0	0	0	1	0	0	0	11281	449	16	5	295	5	OR6Q1	11	57798717	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	2687331	57798717	77207799	88	74139										
OR4D11	0	genome.wustl.edu	37	chr11	59271930	59271930	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	actctgaggaaccaggaaatGaagtcagccatgagaagact	11	8	2	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	59271930	59271930	G	T	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	missense	c.882	p.M294I	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	49	0	0	27	5	15.62	-	-	-	T	59271930	G	T	59271930	3	4	921	1	0	0	0	0	1	0	0	0	11128	1290	45	2	884	2	OR4D11	11	59271930	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	1473213	59271930	75734586	89	74140										
MRPL16	0	genome.wustl.edu	37	chr11	59574217	59574217	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gggctggtactcgccatatgGcaaacatgttcttggggtcc	13	10	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	59574217	59574217	G	C	SNP	MRPL16	ENST00000300151	human	ensembl	69_37n	-1	known	missense	c.359	p.A120G	0.998	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	-	no_errors	MRPL16	HGNC	ENSG00000166902	66	0	0	48	15	23.81	-	-	-	C	59574217	G	C	59574217	3	2	921	1	0	0	0	0	1	0	0	0	9853	1203	42	4	400	4	MRPL16	11	59574217	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	302287	59574217	75432299	90	74141										
B3GAT3	0	genome.wustl.edu	37	chr11	62388132	62388132	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ccgcaggggaggaaggcagtCacatggctggcctggtccca	16	12	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	62388132	62388132	C	T	SNP	B3GAT3	ENST00000265471	human	ensembl	69_37n	-1	known	missense	c.94	p.D32N	1.000	NULL	pfam_Glyco_trans_43	-	no_errors	B3GAT3	HGNC	ENSG00000149541	60	0	0	31	8	20.51	-	-	-	T	62388132	C	T	62388132	3	4	921	1	0	0	0	0	1	0	0	0	1259	826	29	2	929	2	B3GAT3	11	62388132	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	2813915	62388132	72618384	91	74142										
SLC22A10	0	genome.wustl.edu	37	chr11	63057905	63057905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgaggccagagaagtgtcgtCgctttgtccatccccagtgg	13	11	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	63057905	63057905	C	T	SNP	SLC22A10	ENST00000332793	human	ensembl	69_37n	1	known	missense	c.268	p.R90C	0.224	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	41	0	0	26	6	18.75	-	-	-	T	63057905	C	T	63057905	3	4	921	1	0	0	0	0	1	0	0	0	14530	884	31	1	270	1	SLC22A10	11	63057905	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	669773	63057905	71948611	92	74143										
FLRT1	0	genome.wustl.edu	37	chr11	63884804	63884804	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtggtcaacgtgcggggcctCatgtgccagggccctgagaa	16	11	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	11	63884804	63884804	C	A	SNP	FLRT1	ENST00000246841	human	ensembl	69_37n	1	known	silent	c.1065	p.L355	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT1	HGNC	ENSG00000126500	52	0	0	31	15	32.61	-	-	-	A	63884804	C	A	63884804	2	1	921	1	0	0	0	0	0	0	0	1	5984	813	29	2		2	FLRT1	11	63884804	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	826899	63884804	71121712	93	74144										
MRPL42	0	genome.wustl.edu	37	chr12	93870793	93870793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tctaccagatgactataattGgtatgtattaaaattcaatt	5	5	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	12	93870793	93870793	G	T	SNP	MRPL42	ENST00000361630	human	ensembl	69_37n	1	known	missense	c.134	p.C45F	1.000	pfam_Ribosomal-S32_mit	pfam_Ribosomal-S32_mit	-	no_errors	MRPL42	HGNC	ENSG00000198015	39	0	0	24	3	11.11	-	-	-	T	93870793	G	T	93870793	3	4	921	1	0	0	0	0	1	0	0	0	9878	1362	47	4	164	4	MRPL42	12	93870793	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		93870793	39981102	94	74145										
ZIC5	0	genome.wustl.edu	37	chr13	100623858	100623858	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttgctcaaagggggctccatCagaactacacaatcaggccc	9	13	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	13	100623858	100623858	C	G	SNP	ZIC5	ENST00000267294	human	ensembl	69_37n	-1	novel	silent	c.72	p.L24	0.963	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800	41	0	0	32	5	13.51	-	-	-	G	100623858	C	G	100623858	2	3	921	1	0	0	0	0	0	0	0	1	17778	813	29	2		2	ZIC5	13	100623858	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09		100623858	14546020	95	74146										
GRTP1	0	genome.wustl.edu	37	chr13	114009686	114009686	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtttctctctccctggagaaGctggtggtagtagccgggat	14	9	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	13	114009686	114009686	G	T	SNP	GRTP1	ENST00000375430	human	ensembl	69_37n	-1	known	missense	c.292	p.L98I	0.572	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	GRTP1	HGNC	ENSG00000139835	70	0	0	33	4	10.81	-	-	-	T	114009686	G	T	114009686	3	4	921	1	0	0	0	0	1	0	0	0	6861	971	34	4	742	4	GRTP1	13	114009686	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	13385828	114009686	1160192	96	74147										
OR11H4	0	genome.wustl.edu	37	chr14	20711477	20711477	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cattttctacatctcccaacTccccttctgtggtcctaata	3	15	3	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	14	20711477	20711477	T	A	SNP	OR11H4	ENST00000315409	human	ensembl	69_37n	1	known	missense	c.527	p.L176H	0.397	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR11H4	HGNC	ENSG00000176198	52	0	0	44	12	21.43	-	-	-	A	20711477	T	A	20711477	3	1	921	1	0	0	0	0	1	0	0	0	11001	1551	54	5	529	5	OR11H4	14	20711477	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09		20711477	86638063	97	74148										
MAP2K1	0	genome.wustl.edu	37	chr15	66727520	66727520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tgagctgggggctggcaatgGcggtgtggtgttcaaggtct	19	6	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	15	66727520	66727520	G	T	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	missense	c.236	p.G79V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	40	0	0	31	4	11.43	-	-	-	T	66727520	G	T	66727520	3	4	921	1	0	0	0	0	1	0	0	0	9307	1203	42	4	242	4	MAP2K1	15	66727520	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		66727520	35803872	98	74149										
PTPN9	0	genome.wustl.edu	37	chr15	75763106	75763106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tcactgtgaggaagccaaatCggatccgagagtctttttct	10	9	3	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	15	75763106	75763106	C	T	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	missense	c.1274	p.R425Q	0.996	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	72	0	0	63	14	18.18	-	-	-	T	75763106	C	T	75763106	3	4	921	1	0	0	0	0	1	0	0	0	12877	884	31	1	519	1	PTPN9	15	75763106	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	9035586	75763106	26768286	99	74150										
C15orf27	0	genome.wustl.edu	37	chr15	76496517	76496517	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	acacagggtaagtctgttcaAccagaagaaccaggagggct	12	9	2	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	15	76496517	76496517	A	T	SNP	C15orf27	ENST00000388942	human	ensembl	69_37n	1	known	missense	c.1457	p.N486I	1.000	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758	18	0	0	26	7	21.21	-	-	-	T	76496517	A	T	76496517	3	4	921	1	0	0	0	0	1	0	0	0	1800	43	2	5	1495	5	C15orf27	15	76496517	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	733411	76496517	26034875	100	74151										
LRRC28	0	genome.wustl.edu	37	chr15	99926306	99926306	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gacttttgacctgctgagttGataaacactcaagaacctca	7	10	2	4			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	15	99926306	99926306	G	C	SNP	LRRC28	ENST00000301981	human	ensembl	69_37n	1	known	nonstop	c.1103	p.*368S	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	52	0	0	84	10	10.64	-	-	-	C	99926306	G	C	99926306	4	2	921	1	0	0	0	0	0	0	0	0	9048	1285	45	2	1137	2	LRRC28	15	99926306	Nonstop_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	23429789	99926306	2605086	101	74152										
CACNA1H	0	genome.wustl.edu	37	chr16	1250536	1250536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	acaacggtgccatcaacttcGacaacatcggctacgcctgg	9	14	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	16	1250536	1250536	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	1	known	missense	c.1084	p.D362N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	49	0	0	23	6	20.69	-	-	-	A	1250536	G	A	1250536	3	1	921	1	0	0	0	0	1	0	0	0	2570	1058	37	1	1106	1	CACNA1H	16	1250536	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		1250536	89104217	102	74153										
PKD1	0	genome.wustl.edu	37	chr16	2156874	2156874	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cacgtaggagctgcggctcaCttcgtacacggcctgtgcct	12	14	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	16	2156874	2156874	C	G	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.7141	p.V2381L	1.000	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	108	0	0	61	16	20.78	-	-	-	G	2156874	C	G	2156874	3	3	921	1	0	0	0	0	1	0	0	0	12037	565	20	4	5890	4	PKD1	16	2156874	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	906338	2156874	88197879	103	74154										
ZNF205	0	genome.wustl.edu	37	chr16	3169627	3169627	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ggcttcagctggcactcgcaCctggtgacgcaccggcgcac	13	16	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	16	3169627	3169627	C	G	SNP	ZNF205	ENST00000219091	human	ensembl	69_37n	1	known	missense	c.966	p.H322Q	0.950	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386	29	0	0	24	4	14.29	-	-	-	G	3169627	C	G	3169627	3	3	921	1	0	0	0	0	1	0	0	0	17860	506	18	4	988	4	ZNF205	16	3169627	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	1012753	3169627	87185126	104	74155										
AARS	0	genome.wustl.edu	37	chr16	70296393	70296393	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	acgaacatcttctccctgcgCagagccatcaccgtagccac	7	17	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	16	70296393	70296393	C	T	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	silent	c.1527	p.L509	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	32	0	0	21	4	16	-	-	-	T	70296393	C	T	70296393	2	4	921	1	0	0	0	0	0	0	0	1	19	697	25	4		4	AARS	16	70296393	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	67126766	70296393	20058360	105	74156										
RNF167	0	genome.wustl.edu	37	chr17	4843979	4843979	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcgttttatccccgtaccagAaaaggatacatttagtgcct	8	10	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	17	4843979	4843979	A	G	SNP	RNF167	ENST00000570492	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF167	HGNC	ENSG00000108523	56	0	0	25	29	53.7	-	-	-	G	4843979	A	G	4843979	1	3	921	0	1	0	0	0	0	0	0	0	13544	261	9	5		5	RNF167	17	4843979	RNA	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09		4843979	76351231	106	74157										
NUP88	0	genome.wustl.edu	37	chr17	5264483	5264483	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	agaattgtctaacttggccaTatgtattttcacatttcagg	7	7	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	17	5264483	5264483	T	G	SNP	NUP88	ENST00000573169	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	NUP88	HGNC	ENSG00000108559	55	0	0	30	22	42.31	-	-	-	G	5264483	T	G	5264483	1	3	921	0	1	0	0	0	0	0	0	0	10844	1421	49	5		5	NUP88	17	5264483	RNA	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	420504	5264483	75930727	107	74158										
ACAP1	0	genome.wustl.edu	37	chr17	7249758	7249758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttcgtctctgcacagtgaaaCtctgccctgactcagaaagg	9	12	3	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	17	7249758	7249758	C	T	SNP	ACAP1	ENST00000158762	human	ensembl	69_37n	1	known	missense	c.955	p.L319F	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818	85	0	0	103	15	12.71	-	-	-	T	7249758	C	T	7249758	3	4	921	1	0	0	0	0	1	0	0	0	118	565	20	4	1001	4	ACAP1	17	7249758	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	1985275	7249758	73945452	108	74159										
TP53	0	genome.wustl.edu	37	chr17	7578239	7578239	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtttctgtcatccaaatactCcacacgcaaatttccttcca	3	14	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	17	7578239	7578239	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.610	p.E204*	0.045	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	40	0	0	22	17	43.59	-	-	-	A	7578239	C	A	7578239	4	1	921	1	0	0	0	0	0	1	0	0	16477	864	30	2	684	2	TP53	17	7578239	Nonsense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	328481	7578239	73616971	109	74160										
C18orf34	0	genome.wustl.edu	37	chr18	30926332	30926332	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	atgagacgaatggcctctgaGagcaatgtttccatttcctg	10	9	1	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	18	30926332	30926332	G	T	SNP	C18orf34	ENST00000406524	human	ensembl	69_37n	-1	known	silent	c.501	p.L167	0.093	NULL	NULL	-	no_errors	C18orf34	HGNC	ENSG00000166960	13	0	0	16	7	30.43	-	-	-	T	30926332	G	T	30926332	2	4	921	1	0	0	0	0	0	0	0	1	1919	929	33	2		2	C18orf34	18	30926332	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		30926332	47150916	110	74161										
ZNF136	0	genome.wustl.edu	37	chr19	12297991	12297991	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ccctttcattctctgagttcAtttcaagtgcatgaaagaat	6	9	4	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	12297991	12297991	A	T	SNP	ZNF136	ENST00000343979	human	ensembl	69_37n	1	known	silent	c.798	p.S266	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF136	HGNC	ENSG00000196646	33	0	0	16	3	15.79	-	-	-	T	12297991	A	T	12297991	2	4	921	1	0	0	0	0	0	0	0	1	17822	204	8	5		5	ZNF136	19	12297991	Silent	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09		12297991	46830992	111	74162										
RTBDN	0	genome.wustl.edu	37	chr19	12939557	12939557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cgactgcgaagggcacgttgGaggtgttccaggaaggattc	16	8	0	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	12939557	12939557	G	A	SNP	RTBDN	ENST00000393233	human	ensembl	69_37n	-1	known	missense	c.155	p.S52F	0.636	NULL	NULL	-	no_errors	RTBDN	HGNC	ENSG00000132026	33	0	0	10	6	37.5	-	-	-	A	12939557	G	A	12939557	3	1	921	1	0	0	0	0	1	0	0	0	13803	1161	41	2	422	2	RTBDN	19	12939557	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	641566	12939557	46189426	112	74163										
PLVAP	0	genome.wustl.edu	37	chr19	17476455	17476455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctcatgaggctgggcatgtgGtcgcaggctctgcggatgga	17	9	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	17476455	17476455	G	T	SNP	PLVAP	ENST00000252590	human	ensembl	69_37n	-1	known	missense	c.819	p.D273E	0.013	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300	62	0	0	33	5	13.16	-	-	-	T	17476455	G	T	17476455	3	4	921	1	0	0	0	0	1	0	0	0	12190	1252	44	4	525	4	PLVAP	19	17476455	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	4536898	17476455	41652528	113	74164										
BAX	0	genome.wustl.edu	37	chr19	49459541	49459541	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ttctgacggcaacttcaactGgggccgggttgtcgcccttt	12	12	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	49459541	49459541	G	A	SNP	BAX	ENST00000293288	human	ensembl	69_37n	1	known	nonsense	c.320	p.W107*	1.000	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BAX	HGNC	ENSG00000087088	44	0	0	23	5	17.86	-	-	-	A	49459541	G	A	49459541	4	1	921	1	0	0	0	0	0	1	0	0	1332	1357	47	4	334	4	BAX	19	49459541	Nonsense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	31983086	49459541	9669442	114	74165										
SIGLEC6	0	genome.wustl.edu	37	chr19	52023428	52023428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gtgtaggacagcgtagtggaGctcctgctcatcttctgaga	13	9	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	52023428	52023428	G	T	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	missense	c.1270	p.L424I	0.033	NULL	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	60	0	0	48	18	27.27	-	-	-	T	52023428	G	T	52023428	3	4	921	1	0	0	0	0	1	0	0	0	14401	971	34	4	95	4	SIGLEC6	19	52023428	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	2563887	52023428	7105555	115	74166										
ZNF480	0	genome.wustl.edu	37	chr19	52824909	52824909	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gagtatcctttcacttacatCtgtctgaactggagctattt	7	9	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	52824909	52824909	C	T	SNP	ZNF480	ENST00000468240	human	ensembl	69_37n	1	known	silent	c.406	p.L136	0.172	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464	41	0	0	25	5	16.67	-	-	-	T	52824909	C	T	52824909	2	4	921	1	0	0	0	0	0	0	0	1	18031	912	32	2		2	ZNF480	19	52824909	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	801481	52824909	6304074	116	74167										
ZNF17	0	genome.wustl.edu	37	chr19	57929403	57929403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	actttgcacttttgtcctcaGtaggtaaggccctgacacct	8	12	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	19	57929403	57929403	G	A	SNP	ZNF17	ENST00000307658	human	ensembl	69_37n	1	known	missense	c.139	p.V47I	0.003	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272	40	0	0	18	4	18.18	-	-	-	A	57929403	G	A	57929403	3	1	921	1	0	0	0	0	1	0	0	0	17839	1029	36	4	145	4	ZNF17	19	57929403	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	5104494	57929403	1199580	117	74168										
C20orf26	0	genome.wustl.edu	37	chr20	20144813	20144813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cacttccgccccatctacagGggagcctcagctgctttttg	9	15	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	20	20144813	20144813	G	T	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.1146	p.R382S	0.165	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	29	0	0	25	5	16.67	-	-	-	T	20144813	G	T	20144813	3	4	921	1	0	0	0	0	1	0	0	0	2126	1223	43	4	1184	4	C20orf26	20	20144813	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		20144813	42880707	118	74169										
RALGAPA2	0	genome.wustl.edu	37	chr20	20501588	20501588	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aacagtcagcaggttacccaAttctgctgatgaatgatact	8	9	2	3			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	20	20501588	20501588	A	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.4057	p.L1353M	0.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	30	0	0	8	6	42.86	-	-	-	T	20501588	A	T	20501588	3	4	921	1	0	0	0	0	1	0	0	0	13097	98	4	5	1600	5	RALGAPA2	20	20501588	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	356775	20501588	42523932	119	74170										
KIAA1755	0	genome.wustl.edu	37	chr20	36869996	36869996	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	aactctgggctggttatcttGgtccaaggcacaggggcaat	13	9	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	20	36869996	36869996	G	T	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.537	p.T179	0.220	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	53	0	0	33	7	16.67	-	-	-	T	36869996	G	T	36869996	2	4	921	1	0	0	0	0	0	0	0	1	8309	1335	47	4		4	KIAA1755	20	36869996	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	16368408	36869996	26155524	120	74171										
ZFP64	0	genome.wustl.edu	37	chr20	50701237	50701237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctctgatcactgtgctgcttCttgtggcatctcagagagtc	10	11	4	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	20	50701237	50701237	C	G	SNP	ZFP64	ENST00000361387	human	ensembl	69_37n	-1	known	missense	c.1797	p.K599N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	25	0	0	25	5	16.67	-	-	-	G	50701237	C	G	50701237	3	3	921	1	0	0	0	0	1	0	0	0	17748	912	32	2	144	2	ZFP64	20	50701237	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	13831241	50701237	12324283	121	74172										
ITGB2	0	genome.wustl.edu	37	chr21	46306292	46306292	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	accaagtgctcctaactctcAgcaaacttggggttcatgac	8	12	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	21	46306292	46306292	A	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	silent	c.2301	p.A767	0.992	pirsf_Integrin_bsu,pfam_Integrin_bsu_cyt	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	78	0	0	35	11	23.91	-	-	-	T	46306292	A	T	46306292	2	4	921	1	0	0	0	0	0	0	0	1	7948	175	7	5		5	ITGB2	21	46306292	Silent	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09		46306292	1823603	122	74173										
GAS2L1	0	genome.wustl.edu	37	chr22	29704316	29704316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cgccgtgaccgaggctgcccGtgcattggcagccgcccgcc	14	18	0	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	22	29704316	29704316	G	A	SNP	GAS2L1	ENST00000403764	human	ensembl	69_37n	1	known	missense	c.221	p.R74H	0.969	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L1	HGNC	ENSG00000185340	71	0	0	52	14	21.21	-	-	-	A	29704316	G	A	29704316	3	1	921	1	0	0	0	0	1	0	0	0	6296	1145	40	1	223	1	GAS2L1	22	29704316	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		29704316	21600250	123	74174										
GCAT	0	genome.wustl.edu	37	chr22	38208968	38208968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gccatcctctatcccagctgTtatgacgccaacgccggcct	8	17	1	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	22	38208968	38208968	T	C	SNP	GCAT	ENST00000451984	human	ensembl	69_37n	1	novel	missense	c.356	p.V119A	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GCAT	HGNC	ENSG00000100116	54	0	0	38	16	29.63	-	-	-	C	38208968	T	C	38208968	3	2	921	1	0	0	0	0	1	0	0	0	6334	1731	60	5	490	5	GCAT	22	38208968	Missense_Mutation	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	8504652	38208968	13095598	124	74175										
ZBED1	0	genome.wustl.edu	37	chrX	2408349	2408349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cacgatggaggctgggtacaGcccctcgcagatgaggccca	14	13	0	2			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	2408349	2408349	G	A	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	silent	c.412	p.L138	0.869	NULL	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	58	0	0	42	15	26.32	-	-	-	A	2408349	G	A	2408349	2	1	921	1	0	0	0	0	0	0	0	1	17614	962	34	4		4	ZBED1	23	2408349	Silent	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09		2408349	152862211	125	74176										
ZNF182	0	genome.wustl.edu	37	chrX	47842725	47842725	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	taggtctccagcatcacgtcTctgtacagggtcctctgtgg	11	12	4	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	47842725	47842725	T	C	SNP	ZNF182	ENST00000305127	human	ensembl	69_37n	-1	known	silent	c.159	p.R53	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118	54	0	0	35	35	50	-	-	-	C	47842725	T	C	47842725	2	2	921	1	0	0	0	0	0	0	0	1	17846	1548	54	5		5	ZNF182	23	47842725	Silent	SNP	T	TCGA-EW-A3U0-01A-11D-A228-09	45434376	47842725	107427835	126	74177										
ZNF630	0	genome.wustl.edu	37	chrX	47918374	47918374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	cacattcagtacacatataaGgtttctctccagtatgaagt	6	9	2	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	47918374	47918374	G	T	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	missense	c.1457	p.P486H	0.973	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	27	0	0	16	4	20	-	-	-	T	47918374	G	T	47918374	3	4	921	1	0	0	0	0	1	0	0	0	18150	1000	35	4	520	4	ZNF630	23	47918374	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	75649	47918374	107352186	127	74178										
HDAC6	0	genome.wustl.edu	37	chrX	48681535	48681535	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ggtggccctcactcaggaccAgccctcagaggcagccacag	12	16	3	1			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	48681535	48681535	A	T	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2768	p.Q923L	0.506	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	78	0	0	46	19	29.23	-	-	-	T	48681535	A	T	48681535	3	4	921	1	0	0	0	0	1	0	0	0	7062	188	7	5	2820	5	HDAC6	23	48681535	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	763161	48681535	106589025	128	74179										
CCNB3	0	genome.wustl.edu	37	chrX	50054000	50054000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	caccactgggaaggagttgtCcttcaaggagccattagcct	11	11	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	50054000	50054000	C	A	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.2831	p.S944Y	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	21	0	0	23	5	17.86	-	-	-	A	50054000	C	A	50054000	3	1	921	1	0	0	0	0	1	0	0	0	2943	855	30	2	2845	2	CCNB3	23	50054000	Missense_Mutation	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	1372465	50054000	105216560	129	74180										
FGD1	0	genome.wustl.edu	37	chrX	54496512	54496512	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	ctgtccttctcttcctcctcCtcctcgtcgtcctcctcctc	3	22	1	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	54496512	54496512	C	T	SNP	FGD1	ENST00000375135	human	ensembl	69_37n	-1	known	silent	c.1038	p.E346	0.996	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302	50	0	0	55	7	11.29	-	-	-	T	54496512	C	T	54496512	2	4	921	1	0	0	0	0	0	0	0	1	5878	680	24	4		4	FGD1	23	54496512	Silent	SNP	C	TCGA-EW-A3U0-01A-11D-A228-09	4442512	54496512	100774048	130	74181										
POF1B	0	genome.wustl.edu	37	chrX	84614599	84614599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	tttcctaatagtggtctgtgGatatgtagtaagtttcactg	10	5	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	84614599	84614599	G	T	SNP	POF1B	ENST00000373145	human	ensembl	69_37n	-1	known	missense	c.394	p.P132T	1.000	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	54	0	0	34	4	10.53	-	-	-	T	84614599	G	T	84614599	3	4	921	1	0	0	0	0	1	0	0	0	12256	1174	41	2	1431	2	POF1B	23	84614599	Missense_Mutation	SNP	G	TCGA-EW-A3U0-01A-11D-A228-09	30118087	84614599	70655961	131	74182										
COL4A5	0	genome.wustl.edu	37	chrX	107863632	107863632	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gatcaccagggcttccaggaAaagcaggtgcctctggattt	12	10	2	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	107863632	107863632	A	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	nonsense	c.2653	p.K885*	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	56	0	0	35	7	16.67	-	-	-	T	107863632	A	T	107863632	4	4	921	1	0	0	0	0	0	1	0	0	3724	15	1	5	2775	5	COL4A5	23	107863632	Nonsense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	23249033	107863632	47406928	132	74183										
AIFM1	0	genome.wustl.edu	37	chrX	129299563	129299563	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.122137404580153	16	0.0132365420010287	2.1217661933476	3.666965486329	0.937113402061856	0.024687945222957	0.251737451737452	8	gcctcgggcttcggacgcacAcggtccgcaccaagggcacc	13	17	0	0			TCGA-EW-A3U0-01A-11D-A228-09	TCGA-EW-A3U0-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0448206f-3ade-4087-b1a9-4fb2d14e1367	8fc3cfb0-e245-4089-a73c-8d93cb8fc5ee	X	129299563	129299563	A	C	SNP	AIFM1	ENST00000287295	human	ensembl	69_37n	-1	known	missense	c.68	p.V23G	0.739	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709	80	0	0	66	12	15.38	-	-	-	C	129299563	A	C	129299563	3	2	921	1	0	0	0	0	1	0	0	0	426	159	6	5	1984	5	AIFM1	23	129299563	Missense_Mutation	SNP	A	TCGA-EW-A3U0-01A-11D-A228-09	21435931	129299563	25970997	133	74184										
NOTCH2	0	genome.wustl.edu	37	chr1	120480488	120480488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	agcaaagcttacctctcctgGaggctgctatgtcacaagag	10	11	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	120480488	120480488	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.3329	p.S1110F	0.001	pirsf_Notch,smart_EGF-like,smart_EGF-like_Ca-bd	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	24	0	0	42	6	12.5	-	-	-	A	120480488	G	A	120480488	3	1	922	1	0	0	0	0	1	0	0	0	10620	1174	41	2	4146	2	NOTCH2	1	120480488	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		120480488	128770133	1	74185										
SCNM1	0	genome.wustl.edu	37	chr1	151139102	151139102	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ttttttcctttgagacggagGtctcgcggtgctgcccaggc	13	11	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	151139102	151139102	G	T	SNP	SCNM1	ENST00000471039	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.064	-	-	-	no_errors	SCNM1	HGNC	ENSG00000163156	13	0	0	31	19	38	-	-	-	T	151139102	G	T	151139102	1	4	922	0	1	0	0	0	0	0	0	0	14014	1276	44	4		4	SCNM1	1	151139102	RNA	SNP	G	TCGA-EW-A423-01A-11D-A243-09	30658614	151139102	98111519	2	74186										
DDR2	0	genome.wustl.edu	37	chr1	162722987	162722987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cacagctgccaaatatggaaGgtgaggatggttacatcaag	12	7	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	162722987	162722987	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	1	known	missense	c.185	p.R62K	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	15	0	0	50	15	23.08	-	-	-	A	162722987	G	A	162722987	3	1	922	1	0	0	0	0	1	0	0	0	4368	1014	35	4	191	4	DDR2	1	162722987	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	11583885	162722987	86527634	3	74187										
OR6F1	0	genome.wustl.edu	37	chr1	247875683	247875683	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tagtgtaaaggatagcagatGgcaagacagcggtcataagc	13	6	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	247875683	247875683	G	A	SNP	OR6F1	ENST00000302084	human	ensembl	69_37n	-1	known	silent	c.375	p.A125	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	17	0	0	47	12	20.34	-	-	-	A	247875683	G	A	247875683	2	1	922	1	0	0	0	0	0	0	0	1	11274	1335	47	4		4	OR6F1	1	247875683	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	85152696	247875683	1374938	4	74188										
DDX1	0	genome.wustl.edu	37	chr2	15743373	15743373	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gttatgcagggtcgggtggtCtaccatgcaggcctctttgg	15	9	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	15743373	15743373	C	T	SNP	DDX1	ENST00000233084	human	ensembl	69_37n	1	known	missense	c.449	p.S150F	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785	48	0	0	47	25	34.72	-	-	-	T	15743373	C	T	15743373	3	4	922	1	0	0	0	0	1	0	0	0	4372	913	32	2	479	2	DDX1	2	15743373	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09		15743373	227456000	5	74189										
ALMS1	0	genome.wustl.edu	37	chr2	73651968	73651968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tgaccattttgatgctgctcGttcatatgggcagtattgga	11	7	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	73651968	73651968	G	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	1	known	missense	c.1175	p.R392P	0.010	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	17	0	0	23	15	39.47	-	-	-	C	73651968	G	C	73651968	3	2	922	1	0	0	0	0	1	0	0	0	535	1145	40	3	1193	3	ALMS1	2	73651968	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	57908595	73651968	169547405	6	74190										
TBC1D8	0	genome.wustl.edu	37	chr2	101667087	101667087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aatttctggatatcaacccaCggaaccacaagtttaactgt	6	10	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	101667087	101667087	C	T	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	silent	c.648	p.P216	0.924	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	20	0	0	37	14	27.45	-	-	-	T	101667087	C	T	101667087	2	4	922	1	0	0	0	0	0	0	0	1	15720	523	19	1		1	TBC1D8	2	101667087	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	28015119	101667087	141532286	7	74191										
RBM45	0	genome.wustl.edu	37	chr2	178977293	178977293	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	catggacgaagctggcagctCtgcgagcggcgggggcttcc	17	12	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	178977293	178977293	C	G	SNP	RBM45	ENST00000286070	human	ensembl	69_37n	1	known	missense	c.20	p.S7C	0.692	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636	29	0	0	20	12	37.5	-	-	-	G	178977293	C	G	178977293	3	3	922	1	0	0	0	0	1	0	0	0	13222	913	32	2	22	2	RBM45	2	178977293	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	77310206	178977293	64222080	8	74192										
TTN	0	genome.wustl.edu	37	chr2	179594184	179594184	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cgaatttccctgttattcttCagccaagtgacttcaaacgg	7	11	3	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179594184	179594184	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.14967	p.L4989	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	23	0	0	17	10	37.04	-	-	-	T	179594184	C	T	179594184	2	4	922	1	0	0	0	0	0	0	0	1	16832	813	29	2		2	TTN	2	179594184	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	616891	179594184	63605189	9	74193										
TTN	0	genome.wustl.edu	37	chr2	179595299	179595299	+	Silent	SNP	C	C	T													0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gtggcagaacaagtgtatgtCccactgtctgtaccttccag							TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179595299	179595299	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.14229	p.G4743	0.557	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	47	0	0	56	23	29.11	-	-	-	T	179595299	C	T	179595299	2	4	922	1	0	0	0	0	0	0	0	1	16832	842	30	2		2	TTN	2	179595299	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	1115	179595299	63604074	10	74194	519	2								
TTN	0	genome.wustl.edu	37	chr2	179595307	179595307	+	Missense_Mutation	SNP	C	C	T													0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	acaagtgtatgtcccactgtCtgtaccttccagctggctga							TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179595307	179595307	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.14221	p.D4741N	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	41	0	0	51	23	31.08	-	-	-	T	179595307	C	T	179595307	3	4	922	1	0	0	0	0	1	0	0	0	16832	913	32	2	86784	2	TTN	2	179595307	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	8	179595307	63604066	11	74195	519	2								
CFLAR	0	genome.wustl.edu	37	chr2	202005121	202005121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	acaggaatgttctccaagcaGcaatccaaaagagtctcaag	8	10	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	202005121	202005121	G	T	SNP	CFLAR	ENST00000309955	human	ensembl	69_37n	1	known	missense	c.565	p.A189S	0.023	NULL	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_ICE_p20	-	no_errors	CFLAR	HGNC	ENSG00000003402	36	0	0	28	4	12.5	-	-	-	T	202005121	G	T	202005121	3	4	922	1	0	0	0	0	1	0	0	0	3321	971	34	4	579	4	CFLAR	2	202005121	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	22409814	202005121	41194252	12	74196										
COL4A3	0	genome.wustl.edu	37	chr2	228111412	228111412	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gtcttttagggtgagcagggGtttccaggactcccagggac	15	9	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	228111412	228111412	G	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	silent	c.399	p.G133	0.866	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	43	0	0	35	18	33.96	-	-	-	T	228111412	G	T	228111412	2	4	922	1	0	0	0	0	0	0	0	1	3721	1248	44	4		4	COL4A3	2	228111412	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	26106291	228111412	15087961	13	74197										
PIK3R4	0	genome.wustl.edu	37	chr3	130454763	130454763	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	atttagcacttgttcagggaAaaaatgtccatttctataag	7	6	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	3	130454763	130454763	A	G	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.817	p.F273L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	36	0	0	36	36	50	-	-	-	G	130454763	A	G	130454763	3	3	922	1	0	0	0	0	1	0	0	0	11995	14	1	5	3331	5	PIK3R4	3	130454763	Missense_Mutation	SNP	A	TCGA-EW-A423-01A-11D-A243-09		130454763	67567667	14	74198										
SLITRK3	0	genome.wustl.edu	37	chr3	164906171	164906171	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gacactgctagggcccactcCttctctttttccagcaaggt	8	14	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	3	164906171	164906171	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	silent	c.2448	p.K816	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	41	0	0	44	15	25.42	-	-	-	T	164906171	C	T	164906171	2	4	922	1	0	0	0	0	0	0	0	1	14833	680	24	4		4	SLITRK3	3	164906171	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	34451408	164906171	33116259	15	74199										
SLIT2	0	genome.wustl.edu	37	chr4	20598129	20598129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	agaatggagctcagtgtatcGtcagaataaatgagccaata	10	6	2	3			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	20598129	20598129	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	1	known	missense	c.3412	p.V1138I	0.999	pfam_EGF-like_dom,smart_Fol_N,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	31	0	0	36	43	54.43	-	-	-	A	20598129	G	A	20598129	3	1	922	1	0	0	0	0	1	0	0	0	14829	1145	40	1	3538	1	SLIT2	4	20598129	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		20598129	170556147	16	74200										
NPNT	0	genome.wustl.edu	37	chr4	106861703	106861703	+	Frame_Shift_Del	DEL	T	T	-													0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gctcacttggtcagtatcagTgcagcagctttgctcgatgt							TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	106861703	106861703	T	-	DEL	NPNT	ENST00000379987	human	ensembl	69_37n	1	known	frame_shift_del	c.673	p.C225fs	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	40	0	0	39	27	40.3	-	-	-	-	106861703	T	-	106861703	7	5	922	1	0	1	0	1	0	0	0	0	10663	1696	59	0	848	0	NPNT	4	106861703	Frame_Shift_Del	DEL	T	TCGA-EW-A423-01A-11D-A243-09	86263574	106861703	84292573	17	74201										
SYNPO2	0	genome.wustl.edu	37	chr4	119952660	119952660	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	actccatctctcccggccagTtggaagtactcctccaatgt	7	15	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	119952660	119952660	T	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	1	known	missense	c.2730	p.S910R	0.405	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	18	0	0	26	10	27.78	-	-	-	A	119952660	T	A	119952660	3	1	922	1	0	0	0	0	1	0	0	0	15549	1722	60	5	2744	5	SYNPO2	4	119952660	Missense_Mutation	SNP	T	TCGA-EW-A423-01A-11D-A243-09	13090957	119952660	71201616	18	74202										
SRD5A1	0	genome.wustl.edu	37	chr5	6663007	6663007	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tggctatgccctggccagctGgtctgtccaaggcgcggctt	14	13	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	5	6663007	6663007	G	A	SNP	SRD5A1	ENST00000274192	human	ensembl	69_37n	1	known	nonsense	c.641	p.W214*	1.000	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545	54	0	0	117	23	16.43	-	-	-	A	6663007	G	A	6663007	4	1	922	1	0	0	0	0	0	1	0	0	15229	1357	47	4	655	4	SRD5A1	5	6663007	Nonsense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		6663007	174252253	19	74203										
EFNA5	0	genome.wustl.edu	37	chr5	106722968	106722968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	atgaattttctactttgtcgTtaacatcgaaaacacgatca	5	8	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	5	106722968	106722968	T	C	SNP	EFNA5	ENST00000333274	human	ensembl	69_37n	-1	known	missense	c.533	p.N178S	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA5	HGNC	ENSG00000184349	17	0	0	33	10	23.26	-	-	-	C	106722968	T	C	106722968	3	2	922	1	0	0	0	0	1	0	0	0	4989	1725	60	5	161	5	EFNA5	5	106722968	Missense_Mutation	SNP	T	TCGA-EW-A423-01A-11D-A243-09	100059961	106722968	74192292	20	74204										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32548026	32548026	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aggattaaaaggtattacctGttggctgaagtccagagtgt	12	5	0	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	32548026	32548026	G	C	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.785	p.T262R	1.000	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	11	0	0	33	18	35.29	-	-	-	C	32548026	G	C	32548026	3	2	922	1	0	0	0	0	1	0	0	0	7259	1377	48	4	23	4	HLA-DRB1	6	32548026	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		32548026	138567041	21	74205										
VPS52	0	genome.wustl.edu	37	chr6	33236395	33236395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ctgtagctgctccaagaaccTgggctctgtcactggagcct	11	13	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	33236395	33236395	T	C	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	missense	c.580	p.R194G	0.953	pfam_Vps52,pfam_Exocyst_Exoc1	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	18	0	0	20	34	62.96	-	-	-	C	33236395	T	C	33236395	3	2	922	1	0	0	0	0	1	0	0	0	17311	1579	55	5	1647	5	VPS52	6	33236395	Missense_Mutation	SNP	T	TCGA-EW-A423-01A-11D-A243-09	688369	33236395	137878672	22	74206										
COL19A1	0	genome.wustl.edu	37	chr6	70642694	70642694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gattgaacttcaccaacttaAaatctactgcagtgcaaacc	5	11	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	70642694	70642694	A	C	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	1	known	missense	c.686	p.K229T	0.324	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	27	0	0	51	27	34.62	-	-	-	C	70642694	A	C	70642694	3	2	922	1	0	0	0	0	1	0	0	0	3706	14	1	5	708	5	COL19A1	6	70642694	Missense_Mutation	SNP	A	TCGA-EW-A423-01A-11D-A243-09	37406299	70642694	100472373	23	74207										
DYNC1I1	0	genome.wustl.edu	37	chr7	95499217	95499217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gaagactgcataaactgggcGtgtcaaaggtcacccaagtg	12	9	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	95499217	95499217	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	1	known	missense	c.448	p.V150M	0.993	pfam_Dynein_IC_1/2	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	35	0	0	47	23	32.86	-	-	-	A	95499217	G	A	95499217	3	1	922	1	0	0	0	0	1	0	0	0	4877	1145	40	1	466	1	DYNC1I1	7	95499217	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		95499217	63639446	24	74208										
ATG9B	0	genome.wustl.edu	37	chr7	150721003	150721003	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aagcaggggttgctgctcctCcccgtggatgggtgagtctt	15	10	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	150721003	150721003	C	T	SNP	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	49	0	0	56	41	42.27	-	-	-	T	150721003	C	T	150721003	1	4	922	0	1	0	0	0	0	0	0	0	1107	864	30	2		2	ATG9B	7	150721003	RNA	SNP	C	TCGA-EW-A423-01A-11D-A243-09	55221786	150721003	8417660	25	74209										
PTPRN2	0	genome.wustl.edu	37	chr7	157926524	157926524	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tggagctccccaaacgcagcGgccccgggctccgaatgcgg	14	16	0	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	157926524	157926524	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	silent	c.1470	p.A490	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	43	0	0	64	38	37.25	-	-	-	A	157926524	G	A	157926524	2	1	922	1	0	0	0	0	0	0	0	1	12891	1103	39	1		1	PTPRN2	7	157926524	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	7205521	157926524	1212139	26	74210										
EBF2	0	genome.wustl.edu	37	chr8	25747294	25747294	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	atggatcgagtcttcttgctCtccgtccatgcttggagttg	11	10	3	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	8	25747294	25747294	C	G	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.725	p.R242T	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	28	0	0	33	11	25	-	-	-	G	25747294	C	G	25747294	3	3	922	1	0	0	0	0	1	0	0	0	4916	913	32	2	1038	2	EBF2	8	25747294	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09		25747294	120616728	27	74211										
PKHD1L1	0	genome.wustl.edu	37	chr8	110439324	110439324	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	agttacacgagagggaacctGtgctggctacgcgtggaaca	14	9	0	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	8	110439324	110439324	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.2939	p.C980S	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	65	0	0	101	29	22.31	-	-	-	C	110439324	G	C	110439324	3	2	922	1	0	0	0	0	1	0	0	0	12046	1377	48	4	3037	4	PKHD1L1	8	110439324	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	84692030	110439324	35924698	28	74212										
TNC	0	genome.wustl.edu	37	chr9	117848957	117848957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tcctcacaccggccctgggtGtggcaggcatgtgggcaggt	16	12	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	117848957	117848957	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.1053	p.H351	0.000	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	26	0	0	15	31	67.39	-	-	-	A	117848957	G	A	117848957	2	1	922	1	0	0	0	0	0	0	0	1	16365	1368	48	4		4	TNC	9	117848957	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09		117848957	23364474	29	74213										
TNC	0	genome.wustl.edu	37	chr9	117849163	117849163	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gtagcaattgttgagacacaGaggcttgttgcagtcatcgc	12	8	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	117849163	117849163	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.847	p.L283	0.741	smart_EGF-like,pfscan_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	41	0	0	15	27	64.29	-	-	-	A	117849163	G	A	117849163	2	1	922	1	0	0	0	0	0	0	0	1	16365	933	33	2		2	TNC	9	117849163	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	206	117849163	23364268	30	74214										
DBC1	0	genome.wustl.edu	37	chr9	121929962	121929962	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ccgctaaaggggttgacataGacaaagaacatggggtccag	13	8	0	3			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	121929962	121929962	G	C	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1686	p.V562	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	31	0	0	8	17	68	-	-	-	C	121929962	G	C	121929962	2	2	922	1	0	0	0	0	0	0	0	1	4279	929	33	2		2	DBC1	9	121929962	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	4080799	121929962	19283469	31	74215										
PDE6C	0	genome.wustl.edu	37	chr10	95386562	95386562	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tttttcttctcttccccaagGacgcctcctgcagaccactg	6	16	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	95386562	95386562	G	A	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	1	known	silent	c.1005	p.P335	0.953	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	61	0	0	71	23	24.47	-	-	-	A	95386562	G	A	95386562	2	1	922	1	0	0	0	0	0	0	0	1	11720	1188	41	2		2	PDE6C	10	95386562	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09		95386562	40148185	32	74216										
PSD	0	genome.wustl.edu	37	chr10	104172164	104172164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cccaggtgccgggccacatcGgccttcctgaagccatctag	11	16	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	104172164	104172164	G	A	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	silent	c.1722	p.A574	0.017	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	52	0	0	65	38	36.89	-	-	-	A	104172164	G	A	104172164	2	1	922	1	0	0	0	0	0	0	0	1	12726	1103	39	1		1	PSD	10	104172164	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	8785602	104172164	31362583	33	74217										
MRPL23	0	genome.wustl.edu	37	chr11	1983601	1983601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	atgcctgcagtgccctgtgcGtggtggccagggcctgggct	17	12	0	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	1983601	1983601	G	A	SNP	MRPL23	ENST00000381514	human	ensembl	69_37n	1	putative	missense	c.430	p.V144M	0.000	NULL	pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	MRPL23	HGNC	ENSG00000214026	43	0	0	75	61	44.85	-	-	-	A	1983601	G	A	1983601	3	1	922	1	0	0	0	0	1	0	0	0	9861	1160	40	1		1	MRPL23	11	1983601	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		1983601	133022915	34	74218										
KCNC1	0	genome.wustl.edu	37	chr11	17794066	17794066	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cccaattattgtaaatctgtCgtaaactctccacaccacag	4	13	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	17794066	17794066	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	69_37n	1	known	silent	c.1425	p.V475	1.000	prints_K_chnl_volt-dep_Kv3.1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	19	0	0	51	26	33.77	-	-	-	T	17794066	C	T	17794066	2	4	922	1	0	0	0	0	0	0	0	1	8068	871	31	1		1	KCNC1	11	17794066	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	15810465	17794066	117212450	35	74219										
KIRREL3	0	genome.wustl.edu	37	chr11	126870458	126870458	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aacttggctgtggttagtttCtcttccttggcggctctcgg	12	10	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	126870458	126870458	C	T	SNP	KIRREL3	ENST00000533026	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	KIRREL3	HGNC	ENSG00000149571	16	0	0	7	21	75	-	-	-	T	126870458	C	T	126870458	1	4	922	0	1	0	0	0	0	0	0	0	8379	928	32	2		2	KIRREL3	11	126870458	RNA	SNP	C	TCGA-EW-A423-01A-11D-A243-09	109076392	126870458	8136058	36	74220										
UGGT2	0	genome.wustl.edu	37	chr13	96506701	96506701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ctccatccagatcgaaatctCgaagttcttttagatcatgt	6	10	3	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	13	96506701	96506701	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.4037	p.R1346Q	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	36	0	0	41	10	19.61	-	-	-	T	96506701	C	T	96506701	3	4	922	1	0	0	0	0	1	0	0	0	17039	884	31	1	533	1	UGGT2	13	96506701	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09		96506701	18663177	37	74221										
TBC1D10B	0	genome.wustl.edu	37	chr16	30376911	30376911	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cacgtccacgggaatggagcTctctctgcagggtcggggga	16	11	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	16	30376911	30376911	T	A	SNP	TBC1D10B	ENST00000409939	human	ensembl	69_37n	-1	known	missense	c.961	p.S321C	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	44	0	0	78	19	19.39	-	-	-	A	30376911	T	A	30376911	3	1	922	1	0	0	0	0	1	0	0	0	15691	1551	54	5	1497	5	TBC1D10B	16	30376911	Missense_Mutation	SNP	T	TCGA-EW-A423-01A-11D-A243-09		30376911	59977842	38	74222										
SRCAP	0	genome.wustl.edu	37	chr16	30744741	30744741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gccatctctacctgcgcctgGatggatctactagagttgaa	10	11	2	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	16	30744741	30744741	G	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	1	known	missense	c.6268	p.D2090Y	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	16	0	0	43	15	25.86	-	-	-	T	30744741	G	T	30744741	3	4	922	1	0	0	0	0	1	0	0	0	15226	1174	41	2	6370	2	SRCAP	16	30744741	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	367830	30744741	59610012	39	74223										
C17orf97	0	genome.wustl.edu	37	chr17	263643	263643	+	Missense_Mutation	SNP	C	C	A													0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aggccctcaagggcttccacCccgaccccgaggccctcaag							TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	263643	263643	C	A	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	missense	c.1009	p.P337T	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	19	0	0	24	7	22.58	-	-	-	A	263643	C	A	263643	3	1	922	1	0	0	0	0	1	0	0	0	1909	623	22	4		4	C17orf97	17	263643	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09		263643	80931567	40	74224	520	2								
C17orf97	0	genome.wustl.edu	37	chr17	263645	263645	+	Silent	SNP	C	C	T													0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gccctcaagggcttccacccCgaccccgaggccctcaaggg							TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	263645	263645	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	1	known	silent	c.1011	p.P337	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	18	0	0	23	7	23.33	-	-	-	T	263645	C	T	263645	2	4	922	1	0	0	0	0	0	0	0	1	1909	639	23	1		1	C17orf97	17	263645	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	2	263645	80931565	41	74225	520	2								
IGF2BP1	0	genome.wustl.edu	37	chr17	47074903	47074903	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cgccgcgggcacttctcctgGgctctccccgaactctcccg	10	20	3	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	47074903	47074903	G	A	SNP	IGF2BP1	ENST00000510023	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.078	-	-	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	53	0	0	76	69	47.59	-	-	-	A	47074903	G	A	47074903	1	1	922	0	1	0	0	0	0	0	0	0	7627	1247	43	4		4	IGF2BP1	17	47074903	RNA	SNP	G	TCGA-EW-A423-01A-11D-A243-09	46811258	47074903	34120307	42	74226										
SDK2	0	genome.wustl.edu	37	chr17	71431705	71431705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tctgcaggcccccgtcgttgCgctgccggaagcgggtcaac	14	15	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	71431705	71431705	C	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1079	p.R360H	0.616	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	40	0	0	88	18	16.98	-	-	-	T	71431705	C	T	71431705	3	4	922	1	0	0	0	0	1	0	0	0	14057	768	27	1	5587	1	SDK2	17	71431705	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	24356802	71431705	9763505	43	74227										
C17orf28	0	genome.wustl.edu	37	chr17	72948429	72948429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	agcctcatgatggtctgcagCggcagcttcgacttccagga	12	12	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	72948429	72948429	C	T	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	silent	c.2079	p.P693	0.783	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	30	0	0	85	25	22.73	-	-	-	T	72948429	C	T	72948429	2	4	922	1	0	0	0	0	0	0	0	1	1868	755	27	1		1	C17orf28	17	72948429	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	1516724	72948429	8246781	44	74228										
HEXDC	0	genome.wustl.edu	37	chr17	80393721	80393721	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tggtgtgggacgacatgctcCgagacctgcctgaggaccag	15	11	0	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	80393721	80393721	C	T	SNP	HEXDC	ENST00000337014	human	ensembl	69_37n	1	known	nonsense	c.604	p.R202*	0.805	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660	22	0	0	61	18	22.78	-	-	-	T	80393721	C	T	80393721	4	4	922	1	0	0	0	0	0	1	0	0	7126	644	23	1	622	1	HEXDC	17	80393721	Nonsense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	7445292	80393721	801489	45	74229										
ZNF521	0	genome.wustl.edu	37	chr18	22806796	22806796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gttgagctgtccactgagagGttggaatctggagtcgtact	14	7	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	18	22806796	22806796	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.1086	p.N362	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	34	0	0	26	21	44.68	-	-	-	A	22806796	G	A	22806796	2	1	922	1	0	0	0	0	0	0	0	1	18061	1252	44	4		4	ZNF521	18	22806796	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09		22806796	55270452	46	74230										
RANBP3	0	genome.wustl.edu	37	chr19	5925680	5925680	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tggaggaaatagttcgttgcGgttggcgtgtctgcgctggg	18	6	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	5925680	5925680	G	A	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	silent	c.882	p.T294	0.003	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	58	0	0	72	57	44.19	-	-	-	A	5925680	G	A	5925680	2	1	922	1	0	0	0	0	0	0	0	1	13112	1103	39	1		1	RANBP3	19	5925680	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09		5925680	53203303	47	74231										
KANK2	0	genome.wustl.edu	37	chr19	11287434	11287434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gctctggggcctcgttctctGtgctgtcgttgtctgagatg	14	10	3	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	11287434	11287434	G	A	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.1604	p.T535I	0.988	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	45	0	0	63	41	39.42	-	-	-	A	11287434	G	A	11287434	3	1	922	1	0	0	0	0	1	0	0	0	8031	1377	48	4	1003	4	KANK2	19	11287434	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	5361754	11287434	47841549	48	74232										
ZNF44	0	genome.wustl.edu	37	chr19	12383720	12383720	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	aaagcttttccacatttacaTttatagggttgctctccagt	6	9	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	12383720	12383720	T	C	SNP	ZNF44	ENST00000393337	human	ensembl	69_37n	-1	known	silent	c.1494	p.K498	0.259	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857	29	0	0	58	23	28.4	-	-	-	C	12383720	T	C	12383720	2	2	922	1	0	0	0	0	0	0	0	1	18008	1490	52	5		5	ZNF44	19	12383720	Silent	SNP	T	TCGA-EW-A423-01A-11D-A243-09	1096286	12383720	46745263	49	74233										
ZNF91	0	genome.wustl.edu	37	chr19	23543146	23543146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ttcactcttggaaggtttctCtttagtatgaattatcttat	6	6	4	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543146	23543146	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2635	p.E879Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	13	0	0	38	26	40.62	-	-	-	G	23543146	C	G	23543146	3	3	922	1	0	0	0	0	1	0	0	0	18293	922	32	2	944	2	ZNF91	19	23543146	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	11159426	23543146	35585837	50	74234			1	121		3	3	675	C		8.231269e-07
ZNF91	0	genome.wustl.edu	37	chr19	23543480	23543480	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tctttacatttgaagggtttCtctctagtatgaattctttt	6	6	4	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543480	23543480	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2301	p.E767D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	36	0	0	51	31	37.8	-	-	-	G	23543480	C	G	23543480	3	3	922	1	0	0	0	0	1	0	0	0	18293	912	32	2	1278	2	ZNF91	19	23543480	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	334	23543480	35585503	51	74235			1	121		3	3	675	C		8.231269e-07
ZNF91	0	genome.wustl.edu	37	chr19	23543820	23543820	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tacatttgtagggtttctctCcagtatgaattctcttatgt	7	7	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543820	23543820	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.1961	p.G654A	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	14	0	0	39	32	45.07	-	-	-	G	23543820	C	G	23543820	3	3	922	1	0	0	0	0	1	0	0	0	18293	855	30	2	1618	2	ZNF91	19	23543820	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09	340	23543820	35585163	52	74236			1	121		3	3	675	C		8.231269e-07
RASGRP4	0	genome.wustl.edu	37	chr19	38916711	38916711	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	tggggagggtcctctcacctCttactgtcttttctgttcat	9	11	5	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	38916711	38916711	C	T	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	silent	c.21	p.K7	1.000	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	23	0	0	60	32	34.78	-	-	-	T	38916711	C	T	38916711	2	4	922	1	0	0	0	0	0	0	0	1	13160	912	32	2		2	RASGRP4	19	38916711	Silent	SNP	C	TCGA-EW-A423-01A-11D-A243-09	15372891	38916711	20212272	53	74237										
SIGLEC5	0	genome.wustl.edu	37	chr19	52130755	52130755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ccgctctgggacccatagatGttccaggccttgcagctgac	11	14	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	52130755	52130755	G	A	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	silent	c.1242	p.N414	0.002	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	68	0	0	106	27	20.3	-	-	-	A	52130755	G	A	52130755	2	1	922	1	0	0	0	0	0	0	0	1	14400	1368	48	4		4	SIGLEC5	19	52130755	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09	13214044	52130755	6998228	54	74238										
SLC19A1	0	genome.wustl.edu	37	chr21	46918318	46918318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	cgccagggtcccctctcgccGccagggtcccctctcgccgc	11	22	2	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	21	46918318	46918318	G	A	SNP	SLC19A1	ENST00000567670	human	ensembl	69_37n	-1	putative	missense	c.1502	p.A501V	0.291	superfamily_Glu_synth_asu_C	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,superfamily_Glu_synth_asu_C,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	8	0	0	39	41	51.25	-	-	-	A	46918318	G	A	46918318	3	1	922	1	0	0	0	0	1	0	0	0	14517	1102	38	1		1	SLC19A1	21	46918318	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09		46918318	1211577	55	74239										
MCM3AP	0	genome.wustl.edu	37	chr21	47695144	47695144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gaacacgctcagctggctacGggtctcccgcatgtacctct	10	15	3	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	21	47695144	47695144	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.1954	p.R652C	0.973	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	45	0	0	53	42	44.21	-	-	-	A	47695144	G	A	47695144	3	1	922	1	0	0	0	0	1	0	0	0	9459	1116	39	1	4080	1	MCM3AP	21	47695144	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	776826	47695144	434751	56	74240										
TOP3B	0	genome.wustl.edu	37	chr22	22311882	22311882	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	gggtccagcaccagcaccccGctctcacattccacgcactg	8	19	1	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	22	22311882	22311882	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	silent	c.2193	p.S731	0.068	NULL	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	12	0	0	13	10	43.48	-	-	-	A	22311882	G	A	22311882	2	1	922	1	0	0	0	0	0	0	0	1	16464	1078	38	1		1	TOP3B	22	22311882	Silent	SNP	G	TCGA-EW-A423-01A-11D-A243-09		22311882	28992684	57	74241										
EP300	0	genome.wustl.edu	37	chr22	41527549	41527549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ccctatcaagtaaatcagatGccgacacaaccccaggtgca	7	14	2	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	22	41527549	41527549	G	A	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	missense	c.1440	p.M480I	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	19	0	0	20	19	48.72	-	-	-	A	41527549	G	A	41527549	3	1	922	1	0	0	0	0	1	0	0	0	5185	1319	46	4	1462	4	EP300	22	41527549	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	19215667	41527549	9777017	58	74242										
FAM47B	0	genome.wustl.edu	37	chrX	34961262	34961262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	caagaaagcggccctattttCcgagctctcgccagtacagc	9	14	1	1			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	34961262	34961262	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	missense	c.314	p.S105F	0.096	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	71	0	0	78	60	43.48	-	-	-	T	34961262	C	T	34961262	3	4	922	1	0	0	0	0	1	0	0	0	5616	855	30	2	316	2	FAM47B	23	34961262	Missense_Mutation	SNP	C	TCGA-EW-A423-01A-11D-A243-09		34961262	120309298	59	74243										
LANCL3	0	genome.wustl.edu	37	chrX	37431625	37431625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	ccttcctggagtgcggctccGacgagctgttcgtgggccgc	15	14	0	0			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	37431625	37431625	G	A	SNP	LANCL3	ENST00000378619	human	ensembl	69_37n	1	known	missense	c.502	p.D168N	1.000	pfam_LANC-like,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036	45	0	0	49	27	35.53	-	-	-	A	37431625	G	A	37431625	3	1	922	1	0	0	0	0	1	0	0	0	8676	1058	37	1	504	1	LANCL3	23	37431625	Missense_Mutation	SNP	G	TCGA-EW-A423-01A-11D-A243-09	2470363	37431625	117838935	60	74244										
UXT	0	genome.wustl.edu	37	chrX	47518369	47518369	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.169491525423729	10	0.100606075209322	2.00621321124918	4.90407673860911	1.26104830421377	1	1	0	agggggaagaccatgttgacCgatccagtttggcctcacac	12	11	1	2			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	47518369	47518369	C	A	SNP	UXT	ENST00000485641	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	UXT	HGNC	ENSG00000126756	67	0	0	110	30	21.43	-	-	-	A	47518369	C	A	47518369	1	1	922	0	1	0	0	0	0	0	0	0	17207	667	23	3		3	UXT	23	47518369	RNA	SNP	C	TCGA-EW-A423-01A-11D-A243-09	10086744	47518369	107752191	61	74245										
SRM	0	genome.wustl.edu	37	chr1	11119330	11119330	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ggcaggttggcgatcatctcCtggtaggagaactcgtctct	13	10	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	11119330	11119330	C	G	SNP	SRM	ENST00000376957	human	ensembl	69_37n	-1	known	missense	c.240	p.Q80H	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	-	no_errors	SRM	HGNC	ENSG00000116649	33	0	0	12	8	40	-	-	-	G	11119330	C	G	11119330	3	3	923	1	0	0	0	0	1	0	0	0	15242	680	24	4	696	4	SRM	1	11119330	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		11119330	238131291	1	74246										
USP48	0	genome.wustl.edu	37	chr1	22084163	22084163	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aatgatggtttaccttttttCtcctctcacagttgggatca	7	9	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	22084163	22084163	C	G	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	missense	c.248	p.R83T	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	86	0	0	59	12	16.67	-	-	-	G	22084163	C	G	22084163	3	3	923	1	0	0	0	0	1	0	0	0	17176	913	32	2	2971	2	USP48	1	22084163	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	10964833	22084163	227166458	2	74247										
SNX7	0	genome.wustl.edu	37	chr1	99157223	99157223	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	caactttaacatttaatgaaGacttcaaaatttttctcact	2	8	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	99157223	99157223	G	C	SNP	SNX7	ENST00000306121	human	ensembl	69_37n	1	known	missense	c.607	p.D203H	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	71	0	0	42	12	22.22	-	-	-	C	99157223	G	C	99157223	3	2	923	1	0	0	0	0	1	0	0	0	14996	942	33	2	621	2	SNX7	1	99157223	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	77073060	99157223	150093398	3	74248										
POGZ	0	genome.wustl.edu	37	chr1	151377893	151377893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cacactcgagttgaccacagCtccatgatctcgtcatcact	6	15	3	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	151377893	151377893	C	G	SNP	POGZ	ENST00000271715	human	ensembl	69_37n	-1	known	missense	c.3618	p.E1206D	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	59	0	0	52	6	10.34	-	-	-	G	151377893	C	G	151377893	3	3	923	1	0	0	0	0	1	0	0	0	12260	796	28	4	618	4	POGZ	1	151377893	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	52220670	151377893	97872728	4	74249										
LCE4A	0	genome.wustl.edu	37	chr1	152681654	152681654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agtgtgcatcctcatgcccaCctccaatctcttcctgctgt	6	16	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	152681654	152681654	C	T	SNP	LCE4A	ENST00000335535	human	ensembl	69_37n	1	known	missense	c.103	p.P35S	0.001	NULL	NULL	-	no_errors	LCE4A	HGNC	ENSG00000187170	65	0	0	49	11	18.33	-	-	-	T	152681654	C	T	152681654	3	4	923	1	0	0	0	0	1	0	0	0	8728	507	18	4	105	4	LCE4A	1	152681654	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	1303761	152681654	96568967	5	74250										
HMCN1	0	genome.wustl.edu	37	chr1	186026400	186026400	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ataggaaaccacaggtcaccTgaaaatattagtgtggtaga	10	6	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	186026400	186026400	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.7179	p.P2393	0.998	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	75	0	0	77	10	11.49	-	-	-	C	186026400	T	C	186026400	2	2	923	1	0	0	0	0	0	0	0	1	7271	1567	55	5		5	HMCN1	1	186026400	Silent	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	33344746	186026400	63224221	6	74251										
MDM4	0	genome.wustl.edu	37	chr1	204506608	204506608	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atcacagtatggatattccaAgtcaagaccaactgaaggta	8	8	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	204506608	204506608	A	T	SNP	MDM4	ENST00000367182	human	ensembl	69_37n	1	known	missense	c.394	p.S132C	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625	79	0	0	80	9	10.11	-	-	-	T	204506608	A	T	204506608	3	4	923	1	0	0	0	0	1	0	0	0	9485	72	3	5	412	5	MDM4	1	204506608	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	18480208	204506608	44744013	7	74252										
MARK1	0	genome.wustl.edu	37	chr1	220752703	220752703	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aactttttcttagcatacatCtgtggatggatatactgaac	7	7	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	220752703	220752703	C	G	SNP	MARK1	ENST00000366917	human	ensembl	69_37n	1	known	missense	c.59	p.S20C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	47	0	0	36	7	16.28	-	-	-	G	220752703	C	G	220752703	3	3	923	1	0	0	0	0	1	0	0	0	9383	913	32	2	65	2	MARK1	1	220752703	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	16246095	220752703	28497918	8	74253										
OBSCN	0	genome.wustl.edu	37	chr1	228495195	228495195	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ggcgagtatgcctgtgtgacAggcggccagaaaaccgctgc	15	11	0	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	228495195	228495195	A	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.12429	p.T4143	0.047	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	41	0	0	21	5	18.52	-	-	-	T	228495195	A	T	228495195	2	4	923	1	0	0	0	0	0	0	0	1	10885	175	7	5		5	OBSCN	1	228495195	Silent	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	7742492	228495195	20755426	9	74254										
OTOF	0	genome.wustl.edu	37	chr2	26693990	26693990	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcatggcccccacactcaccAcatccaccttgacaacagct	5	19	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	26693990	26693990	A	C	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.3893	p.V1298G	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	53	0	0	43	9	16.98	-	-	-	C	26693990	A	C	26693990	3	2	923	1	0	0	0	0	1	0	0	0	11376	173	6	5	2349	5	OTOF	2	26693990	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09		26693990	216505383	10	74255										
SMEK2	0	genome.wustl.edu	37	chr2	55795499	55795499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcctcataaagcgaagggcaCctaattaaaaataatatagg	8	7	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	55795499	55795499	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	69_37n	-1	known	missense	c.1511	p.G504D	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041	34	0	0	12	5	29.41	-	-	-	T	55795499	C	T	55795499	3	4	923	1	0	0	0	0	1	0	0	0	14883	521	18	4	803	4	SMEK2	2	55795499	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	29101509	55795499	187403874	11	74256										
LRRTM4	0	genome.wustl.edu	37	chr2	77746784	77746784	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tttgagcttctgaatgctgtTgaaccttaatgataagcctt	8	7	1	4			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	77746784	77746784	T	A	SNP	LRRTM4	ENST00000409911	human	ensembl	69_37n	-1	known	missense	c.214	p.N72Y	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204	50	0	0	36	13	26.53	-	-	-	A	77746784	T	A	77746784	3	1	923	1	0	0	0	0	1	0	0	0	9108	1812	63	5	1575	5	LRRTM4	2	77746784	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	21951285	77746784	165452589	12	74257										
USP39	0	genome.wustl.edu	37	chr2	85850804	85850804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctcacgcctacattcacagtGtccagtttagccaccatgtt	6	14	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	85850804	85850804	G	A	SNP	USP39	ENST00000409470	human	ensembl	69_37n	1	known	missense	c.469	p.V157I	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP39	HGNC	ENSG00000168883	85	0	0	66	14	17.5	-	-	-	A	85850804	G	A	85850804	3	1	923	1	0	0	0	0	1	0	0	0	17167	1377	48	4	483	4	USP39	2	85850804	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	8104020	85850804	157348569	13	74258										
TTN	0	genome.wustl.edu	37	chr2	179442485	179442485	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gacattaacatggttggcttTcatccaagacttcgaaggta	9	8	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	179442485	179442485	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60964	p.K20322E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	82	0	0	44	12	21.43	-	-	-	C	179442485	T	C	179442485	3	2	923	1	0	0	0	0	1	0	0	0	16832	1792	62	5	39471	5	TTN	2	179442485	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	93591681	179442485	63756888	14	74259										
TTN	0	genome.wustl.edu	37	chr2	179474059	179474059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgagattctccctttttgctGttgtcaatactcaaacgctg	7	10	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	179474059	179474059	G	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.44274	p.N14758K	0.077	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	99	0	0	54	22	28.95	-	-	-	T	179474059	G	T	179474059	3	4	923	1	0	0	0	0	1	0	0	0	16832	1368	48	4	56075	4	TTN	2	179474059	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	31574	179474059	63725314	15	74260										
PLEKHM3	0	genome.wustl.edu	37	chr2	208865794	208865794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tctatcttatttggtgagggCaacagaaaagatggcctggt	12	6	2	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	208865794	208865794	C	A	SNP	PLEKHM3	ENST00000427836	human	ensembl	69_37n	-1	known	missense	c.570	p.L190F	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385	79	0	0	14	11	44	-	-	-	A	208865794	C	A	208865794	3	1	923	1	0	0	0	0	1	0	0	0	12156	709	25	4	1743	4	PLEKHM3	2	208865794	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	29391735	208865794	34333579	16	74261										
CCDC108	0	genome.wustl.edu	37	chr2	219873785	219873785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tcaccttcactttcatgtcgGtgatggtgaactccacttcc	7	13	3	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	219873785	219873785	G	C	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.4658	p.T1553S	1.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	47	0	0	27	14	34.15	-	-	-	C	219873785	G	C	219873785	3	2	923	1	0	0	0	0	1	0	0	0	2768	1261	44	4	1147	4	CCDC108	2	219873785	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	11007991	219873785	23325588	17	74262										
DOCK10	0	genome.wustl.edu	37	chr2	225738767	225738767	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	catccctgaagatttgagttGagggctttacagatgatcat	10	7	1	6			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	225738767	225738767	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	silent	c.1203	p.L401	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	125	0	0	91	28	23.53	-	-	-	T	225738767	G	T	225738767	2	4	923	1	0	0	0	0	0	0	0	1	4720	1277	45	2		2	DOCK10	2	225738767	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	5864982	225738767	17460606	18	74263										
DNAH12	0	genome.wustl.edu	37	chr3	57419473	57419473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttcttcctctccatagccatGttcattcattaaagttagcg	5	11	4	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	57419473	57419473	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.4669	p.H1557Y	0.931	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	71	0	0	58	13	18.31	-	-	-	A	57419473	G	A	57419473	3	1	923	1	0	0	0	0	1	0	0	0	4636	1377	48	4	4725	4	DNAH12	3	57419473	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		57419473	140602957	19	74264										
GPR128	0	genome.wustl.edu	37	chr3	100373936	100373936	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gacatttacctggaacgcacTcagcgctgcacagctctatt	8	13	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	100373936	100373936	T	A	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	1	known	missense	c.1637	p.L546H	0.976	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	50	0	0	42	7	14.29	-	-	-	A	100373936	T	A	100373936	3	1	923	1	0	0	0	0	1	0	0	0	6691	1551	54	5	1683	5	GPR128	3	100373936	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	42954463	100373936	97648494	20	74265										
CD96	0	genome.wustl.edu	37	chr3	111319651	111319651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgttttaacaagggtacataGtaataaaccagcccaatcag	7	8	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	111319651	111319651	G	T	SNP	CD96	ENST00000283285	human	ensembl	69_37n	1	known	missense	c.1025	p.S342I	0.000	pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	73	0	0	74	16	17.78	-	-	-	T	111319651	G	T	111319651	3	4	923	1	0	0	0	0	1	0	0	0	3077	1029	36	4	1055	4	CD96	3	111319651	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	10945715	111319651	86702779	21	74266										
RAP2B	0	genome.wustl.edu	37	chr3	152880777	152880777	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	acatcaagcccatgcgggacCagatcatccgcgtgaagcgg	12	13	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	152880777	152880777	C	T	SNP	RAP2B	ENST00000323534	human	ensembl	69_37n	1	known	nonsense	c.295	p.Q99*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2B	HGNC	ENSG00000181467	26	0	0	14	7	33.33	-	-	-	T	152880777	C	T	152880777	4	4	923	1	0	0	0	0	0	1	0	0	13124	595	21	4	297	4	RAP2B	3	152880777	Nonsense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	41561126	152880777	45141653	22	74267										
PLCH1	0	genome.wustl.edu	37	chr3	155210555	155210555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	acatggagtctggaggtttgGggagttgctgtccactgata	15	6	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	155210555	155210555	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.2234	p.P745L	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	96	0	0	86	14	14	-	-	-	A	155210555	G	A	155210555	3	1	923	1	0	0	0	0	1	0	0	0	12111	1232	43	4	2890	4	PLCH1	3	155210555	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	2329778	155210555	42811875	23	74268										
KNG1	0	genome.wustl.edu	37	chr3	186459878	186459878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttaccttttctgactttcagGactctgatctcattgcaact	5	11	4	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	186459878	186459878	G	A	SNP	KNG1	ENST00000265023	human	ensembl	69_37n	1	known	missense	c.1693	p.D565N	0.986	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889	63	0	0	51	8	13.56	-	-	-	A	186459878	G	A	186459878	3	1	923	1	0	0	0	0	1	0	0	0	8480	1174	41	2	1731	2	KNG1	3	186459878	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	31249323	186459878	11562552	24	74269										
MUC4	0	genome.wustl.edu	37	chr3	195480096	195480096	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctgacacaggaaagagctccCcagagctgcagagtgagtag	13	10	0	5			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	195480096	195480096	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.15334	p.G5112W	0.699	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	47	0	0	32	4	11.11	-	-	-	A	195480096	C	A	195480096	3	1	923	1	0	0	0	0	1	0	0	0	10050	623	22	4	928	4	MUC4	3	195480096	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	9020218	195480096	2542334	25	74270										
LRBA	0	genome.wustl.edu	37	chr4	151749586	151749586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aaagaaagagtagatagcacCtcgctgattgcatctgggcc	11	9	1	4			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	151749586	151749586	C	T	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.875	p.R292K	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	66	0	0	27	15	35.71	-	-	-	T	151749586	C	T	151749586	3	4	923	1	0	0	0	0	1	0	0	0	8997	680	24	4	3790	4	LRBA	4	151749586	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		151749586	39404690	26	74271										
DDX60L	0	genome.wustl.edu	37	chr4	169317267	169317267	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tttcagccttctttgggtttTttttagtgctactatttaaa	6	6	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	169317267	169317267	T	A	SNP	DDX60L	ENST00000260184	human	ensembl	69_37n	-1	known	missense	c.3500	p.K1167I	0.005	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	42	0	0	28	5	15.15	-	-	-	A	169317267	T	A	169317267	3	1	923	1	0	0	0	0	1	0	0	0	4410	1841	64	5	1668	5	DDX60L	4	169317267	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	17567681	169317267	21837009	27	74272										
FAT1	0	genome.wustl.edu	37	chr4	187628565	187628565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	caaccacgacatgtagaagaCgccacgcagccttctggggt	11	13	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	187628565	187628565	C	T	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.2417	p.R806H	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	55	0	0	23	8	25.81	-	-	-	T	187628565	C	T	187628565	3	4	923	1	0	0	0	0	1	0	0	0	5735	536	19	1	11453	1	FAT1	4	187628565	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	18311298	187628565	3525711	28	74273										
CDH6	0	genome.wustl.edu	37	chr5	31302229	31302229	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gattaataggtacataccagTttaaaactcctgaatcttct	5	8	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	31302229	31302229	T	G	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	1	known	missense	c.823	p.F275V	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	75	0	0	51	11	17.74	-	-	-	G	31302229	T	G	31302229	3	3	923	1	0	0	0	0	1	0	0	0	3143	1725	60	5	841	5	CDH6	5	31302229	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09		31302229	149613031	29	74274										
IL6ST	0	genome.wustl.edu	37	chr5	55248110	55248110	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ggtatgcctttatggattcaGggcttcctggtccatcagca	11	10	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	55248110	55248110	G	C	SNP	IL6ST	ENST00000336909	human	ensembl	69_37n	-1	known	missense	c.1520	p.P507R	0.123	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352	92	0	0	65	19	22.62	-	-	-	C	55248110	G	C	55248110	3	2	923	1	0	0	0	0	1	0	0	0	7757	1000	35	4	1260	4	IL6ST	5	55248110	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	23945881	55248110	125667150	30	74275										
HMGCR	0	genome.wustl.edu	37	chr5	74640149	74640149	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttcttagacaaagaattgacAggcttgaagtaagtatttaa	8	4	1	4			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	74640149	74640149	A	G	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	silent	c.357	p.T119	0.994	pfam_Patched,pfscan_SSD,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	109	0	0	65	18	21.69	-	-	-	G	74640149	A	G	74640149	2	3	923	1	0	0	0	0	0	0	0	1	7282	175	7	5		5	HMGCR	5	74640149	Silent	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	19392039	74640149	106275111	31	74276										
ADAMTS19	0	genome.wustl.edu	37	chr5	129040064	129040064	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	attcaaaatgctatgtgtggCgaatgggtgactggtctaag	13	5	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	129040064	129040064	C	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	nonsense	c.3274	p.R1092*	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	37	0	0	33	14	29.79	-	-	-	T	129040064	C	T	129040064	4	4	923	1	0	0	0	0	0	1	0	0	264	760	27	1	3356	1	ADAMTS19	5	129040064	Nonsense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	54399915	129040064	51875196	32	74277										
PCDHGA1	0	genome.wustl.edu	37	chr5	140710475	140710475	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cagaggtaggatgccgctttTcgctctgaatcctagaagtg	12	9	1	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	140710475	140710475	T	C	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.224	p.F75S	0.996	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	48	0	0	31	11	26.19	-	-	-	C	140710475	T	C	140710475	3	2	923	1	0	0	0	0	1	0	0	0	11623	1783	62	5	226	5	PCDHGA1	5	140710475	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	11670411	140710475	40204785	33	74278										
ADAM19	0	genome.wustl.edu	37	chr5	156957818	156957818	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcctcagggtctcttacctaAttcctcggcaagtgctgagc	10	13	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	156957818	156957818	A	G	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	missense	c.410	p.I137T	0.984	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	31	0	0	33	9	21.43	-	-	-	G	156957818	A	G	156957818	3	3	923	1	0	0	0	0	1	0	0	0	240	101	4	5	2428	5	ADAM19	5	156957818	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	16247343	156957818	23957442	34	74279										
ADAMTS2	0	genome.wustl.edu	37	chr5	178552030	178552030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gagctcgcggctgcaggcccGgcggctctcgggccgggcgt	19	15	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	178552030	178552030	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.2902	p.R968W	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	22	0	0	15	4	21.05	-	-	-	A	178552030	G	A	178552030	3	1	923	1	0	0	0	0	1	0	0	0	265	1115	39	1	749	1	ADAMTS2	5	178552030	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	21594212	178552030	2363230	35	74280										
BTNL3	0	genome.wustl.edu	37	chr5	180429676	180429676	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgggactgtttttcagagacGtttttccagccctcaccttg	9	11	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	180429676	180429676	G	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	silent	c.678	p.T226	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	88	0	0	111	21	15.91	-	-	-	A	180429676	G	A	180429676	2	1	923	1	0	0	0	0	0	0	0	1	1575	1132	40	1		1	BTNL3	5	180429676	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	1877646	180429676	485584	36	74281										
LRRC16A	0	genome.wustl.edu	37	chr6	25600888	25600888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agagcagcccacaggcagggCggaggtatggggtccaggtg	19	9	0	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	25600888	25600888	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	1	novel	missense	c.3466	p.R1156W	0.995	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	35	0	0	22	10	30.3	-	-	-	T	25600888	C	T	25600888	3	4	923	1	0	0	0	0	1	0	0	0	9037	759	27	1	3596	1	LRRC16A	6	25600888	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		25600888	145514179	37	74282										
HIST1H1C	0	genome.wustl.edu	37	chr6	26056285	26056285	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ggcttcttaggtttggttccGcccgcctttttaaccttggg	11	11	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	26056285	26056285	G	T	SNP	HIST1H1C	ENST00000343677	human	ensembl	69_37n	-1	known	silent	c.372	p.G124	0.985	NULL	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	59	0	0	33	12	26.67	-	-	-	T	26056285	G	T	26056285	2	4	923	1	0	0	0	0	0	0	0	1	7175	1074	38	3		3	HIST1H1C	6	26056285	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	455397	26056285	145058782	38	74283										
BVES	0	genome.wustl.edu	37	chr6	105581324	105581324	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atatttgctacatgaaaaacCagatgatgtatctctctcca	5	9	2	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	105581324	105581324	C	A	SNP	BVES	ENST00000314641	human	ensembl	69_37n	-1	known	silent	c.129	p.L43	0.993	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276	63	0	0	51	13	20.31	-	-	-	A	105581324	C	A	105581324	2	1	923	1	0	0	0	0	0	0	0	1	1584	581	21	4		4	BVES	6	105581324	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	79525039	105581324	65533743	39	74284										
ROS1	0	genome.wustl.edu	37	chr6	117632212	117632212	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aaatgcatccgttccaagtaGacacagccttttgaaatatc	6	10	0	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	117632212	117632212	G	C	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	silent	c.6204	p.V2068	0.999	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	49	0	0	51	10	16.39	-	-	-	C	117632212	G	C	117632212	2	2	923	1	0	0	0	0	0	0	0	1	13617	929	33	2		2	ROS1	6	117632212	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	12050888	117632212	53482855	40	74285										
MOXD1	0	genome.wustl.edu	37	chr6	132618423	132618423	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttctgctttatagggtctttCtatatctggaggtaatgctg	10	6	4	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	132618423	132618423	C	G	SNP	MOXD1	ENST00000367963	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571Q	0.006	NULL	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931	57	0	0	48	9	15.79	-	-	-	G	132618423	C	G	132618423	3	3	923	1	0	0	0	0	1	0	0	0	9792	922	32	2	134	2	MOXD1	6	132618423	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	14986211	132618423	38496644	41	74286										
BZW2	0	genome.wustl.edu	37	chr7	16744257	16744257	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agtgtttttcttgaccagatGaagaaatttgttgagtggtt	11	3	1	5			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	16744257	16744257	G	T	SNP	BZW2	ENST00000258761	human	ensembl	69_37n	1	known	missense	c.1194	p.M398I	1.000	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW2	HGNC	ENSG00000136261	77	0	0	49	13	20.97	-	-	-	T	16744257	G	T	16744257	3	4	923	1	0	0	0	0	1	0	0	0	1588	1290	45	2	1232	2	BZW2	7	16744257	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		16744257	142394406	42	74287										
DNAH11	0	genome.wustl.edu	37	chr7	21775366	21775366	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gaaatgcaggagtgggaaaaAcagtctttgtaggtgacaca	13	5	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	21775366	21775366	A	G	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.7570	p.T2524A	1.000	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	87	0	0	95	16	14.41	-	-	-	G	21775366	A	G	21775366	3	3	923	1	0	0	0	0	1	0	0	0	4635	43	2	5	7753	5	DNAH11	7	21775366	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	5031109	21775366	137363297	43	74288										
STK31	0	genome.wustl.edu	37	chr7	23793941	23793941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tttttaaaaataggcatgtcGacatcagtgtccgtttcgga	9	7	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	23793941	23793941	G	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.1141	p.D381Y	0.135	NULL	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	69	0	0	59	13	18.06	-	-	-	T	23793941	G	T	23793941	3	4	923	1	0	0	0	0	1	0	0	0	15387	1058	37	3	1179	3	STK31	7	23793941	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	2018575	23793941	135344722	44	74289										
HECW1	0	genome.wustl.edu	37	chr7	43484164	43484164	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tggccgagcagctggacctgGgtgaggaggcatcagcactg	17	10	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	43484164	43484164	G	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	1	known	missense	c.1393	p.G465C	0.053	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	15	0	0	4	9	69.23	-	-	-	T	43484164	G	T	43484164	3	4	923	1	0	0	0	0	1	0	0	0	7093	1232	43	4	1427	4	HECW1	7	43484164	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	19690223	43484164	115654499	45	74290										
FZD9	0	genome.wustl.edu	37	chr7	72849811	72849811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcgcagcggccgcggggcccGgaggccggagggactgctcg	21	14	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	72849811	72849811	G	A	SNP	FZD9	ENST00000344575	human	ensembl	69_37n	1	known	missense	c.1474	p.G492R	0.962	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763	16	0	0	16	5	23.81	-	-	-	A	72849811	G	A	72849811	3	1	923	1	0	0	0	0	1	0	0	0	6186	1117	39	1	1476	1	FZD9	7	72849811	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	29365647	72849811	86288852	46	74291										
MAGI2	0	genome.wustl.edu	37	chr7	77756528	77756528	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aggtacctggggttgtctgtAgtccgacagagggtactgcc	15	9	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	77756528	77756528	A	T	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.3409	p.Y1137N	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	46	0	0	29	6	17.14	-	-	-	T	77756528	A	T	77756528	3	4	923	1	0	0	0	0	1	0	0	0	9262	420	15	5	974	5	MAGI2	7	77756528	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	4906717	77756528	81382135	47	74292										
LAMB1	0	genome.wustl.edu	37	chr7	107572731	107572731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ccagaccaccacagccaggcCccccacacttcctctctcct	4	23	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	107572731	107572731	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.4280	p.G1427E	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	114	0	0	71	10	12.35	-	-	-	T	107572731	C	T	107572731	3	4	923	1	0	0	0	0	1	0	0	0	8664	623	22	4	1108	4	LAMB1	7	107572731	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	29816203	107572731	51565932	48	74293										
NUB1	0	genome.wustl.edu	37	chr7	151071305	151071305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	caggtactccacgcagccagCgggaacttggatgaggccct	13	13	0	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	151071305	151071305	C	T	SNP	NUB1	ENST00000480714	human	ensembl	69_37n	1	putative	missense	c.181	p.R61W	0.026	superfamily_UBA-like	superfamily_UBA-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUB1	HGNC	ENSG00000013374	23	0	0	17	12	40	-	-	-	T	151071305	C	T	151071305	3	4	923	1	0	0	0	0	1	0	0	0	10787	783	27	1		1	NUB1	7	151071305	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	43498574	151071305	8067358	49	74294										
MSRA	0	genome.wustl.edu	37	chr8	10285774	10285774	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aagaaccccaatggctactgCggccttgggggcaccggcgt	14	13	0	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	10285774	10285774	C	T	SNP	MSRA	ENST00000317173	human	ensembl	69_37n	1	known	silent	c.660	p.C220	0.446	pfam_Peptide_Met_Sox_Rdtase_MsrA,superfamily_Peptide_Met_Sox_Rdtase_MsrA,tigrfam_Peptide_Met_Sox_Rdtase_MsrA	pfam_Peptide_Met_Sox_Rdtase_MsrA,superfamily_Peptide_Met_Sox_Rdtase_MsrA,tigrfam_Peptide_Met_Sox_Rdtase_MsrA	-	no_errors	MSRA	HGNC	ENSG00000175806	28	0	0	17	5	22.73	-	-	-	T	10285774	C	T	10285774	2	4	923	1	0	0	0	0	0	0	0	1	9959	776	27	1		1	MSRA	8	10285774	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		10285774	136078248	50	74295										
TTPA	0	genome.wustl.edu	37	chr8	63978530	63978530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aagcatgagaaaactgccaaCcttccagatcaaagatagcc	7	11	1	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	63978530	63978530	C	A	SNP	TTPA	ENST00000260116	human	ensembl	69_37n	-1	known	missense	c.485	p.G162V	0.999	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561	42	0	0	74	13	14.94	-	-	-	A	63978530	C	A	63978530	3	1	923	1	0	0	0	0	1	0	0	0	16833	507	18	4	363	4	TTPA	8	63978530	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	53692756	63978530	82385492	51	74296										
FER1L6	0	genome.wustl.edu	37	chr8	125131850	125131850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctcttccttccccctcagccGcccagacacctccttttcgt	4	21	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	125131850	125131850	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	1	known	missense	c.5393	p.R1798H	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	138	0	0	103	17	14.17	-	-	-	A	125131850	G	A	125131850	3	1	923	1	0	0	0	0	1	0	0	0	5861	1087	38	1	5551	1	FER1L6	8	125131850	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	61153320	125131850	21232172	52	74297										
BAI1	0	genome.wustl.edu	37	chr8	143561149	143561149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctgtccggtgtccccgcaacGccacaggtgagggctggaga	15	13	0	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	143561149	143561149	G	A	SNP	BAI1	ENST00000323289	human	ensembl	69_37n	1	known	missense	c.1822	p.A608T	1.000	smart_GPCR_2_extracellular_dom,prints_GPCR_2_brain-spec_angio_inhib,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790	43	0	0	27	4	12.9	-	-	-	A	143561149	G	A	143561149	3	1	923	1	0	0	0	0	1	0	0	0	1302	1087	38	1	1852	1	BAI1	8	143561149	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	18429299	143561149	2802873	53	74298										
IL11RA	0	genome.wustl.edu	37	chr9	34657465	34657465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atgcccacaggatcccctagGggctgcccgctgtgttgtcc	12	15	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	9	34657465	34657465	G	A	SNP	IL11RA	ENST00000318041	human	ensembl	69_37n	1	known	missense	c.527	p.G176E	0.992	superfamily_Fibronectin_type3,smart_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IL11RA	HGNC	ENSG00000137070	18	0	0	14	7	33.33	-	-	-	A	34657465	G	A	34657465	3	1	923	1	0	0	0	0	1	0	0	0	7677	1232	43	4	549	4	IL11RA	9	34657465	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		34657465	106555966	54	74299										
SNAPC4	0	genome.wustl.edu	37	chr9	139273620	139273620	+	Frame_Shift_Del	DEL	G	G	-													0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cacagtcttgggcttgggccGggggccggttgaagccagca							TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	9	139273620	139273620	G	-	DEL	SNAPC4	ENST00000298532	human	ensembl	69_37n	-1	known	frame_shift_del	c.2659	p.R887fs	0.828	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	18	0	0	10	2	16.67	-	-	-	-	139273620	G	-	139273620	7	5	923	1	0	1	0	1	0	0	0	0	14926	1115	39	0	1758	0	SNAPC4	9	139273620	Frame_Shift_Del	DEL	G	TCGA-GI-A2C8-01A-11D-A16D-09	104616155	139273620	1939811	55	74300										
FAM160B1	0	genome.wustl.edu	37	chr10	116602860	116602860	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tggaagatgagcctcctcatCagatggatcacctgtccaca	9	12	3	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	10	116602860	116602860	C	T	SNP	FAM160B1	ENST00000369248	human	ensembl	69_37n	1	known	nonsense	c.691	p.Q231*	0.272	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553	40	0	0	29	5	14.71	-	-	-	T	116602860	C	T	116602860	4	4	923	1	0	0	0	0	0	1	0	0	5510	827	29	2	713	2	FAM160B1	10	116602860	Nonsense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		116602860	18931887	56	74301										
FGFR2	0	genome.wustl.edu	37	chr10	123258049	123258049	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agaagatttatgatattcttGtgtttcccaatcatcttcat	5	7	4	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	10	123258049	123258049	G	C	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.1635	p.H545Q	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	115	0	0	83	22	20.95	-	-	-	C	123258049	G	C	123258049	3	2	923	1	0	0	0	0	1	0	0	0	5912	1368	48	4	965	4	FGFR2	10	123258049	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	6655189	123258049	12276698	57	74302										
OR52K2	0	genome.wustl.edu	37	chr11	4470851	4470851	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tggttcagggatcgggagatAaacttctttgcctgtctggc	13	8	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	4470851	4470851	A	T	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	silent	c.282	p.I94	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	76	0	0	43	18	29.51	-	-	-	T	4470851	A	T	4470851	2	4	923	1	0	0	0	0	0	0	0	1	11197	352	13	5		5	OR52K2	11	4470851	Silent	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09		4470851	130535665	58	74303										
NXF1	0	genome.wustl.edu	37	chr11	62561771	62561771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atgccagactgggtagagaaTgcttgcaacatttcctgctg	11	9	0	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	62561771	62561771	T	C	SNP	NXF1	ENST00000527902	human	ensembl	69_37n	-1	novel	missense	c.233	p.H78R	0.108	pfam_TAP_C_dom,superfamily_UBA-like,smart_TAP_C_dom	pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NXF1	HGNC	ENSG00000162231	55	0	0	39	11	22	-	-	-	C	62561771	T	C	62561771	3	2	923	1	0	0	0	0	1	0	0	0	10855	1451	51	5	152	5	NXF1	11	62561771	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	58090920	62561771	72444745	59	74304										
SPTBN2	0	genome.wustl.edu	37	chr11	66458790	66458791	+	Frame_Shift_Del	DEL	CA	CA	-													0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctgaatgtcatgctcgtaggCacagtgtcggcgctgcaggg							TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	66458790	66458791	CA	-	DEL	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	frame_shift_del	c.5530_5529	p.A1844fs	1.000:0.996	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	13	0	0	11	4	25	-	-	-	-	66458791	CA	-	66458790	7	5	923	1	0	1	0	1	0	0	0	0	15211	710	25	0	1690	0	SPTBN2	11	66458790	Frame_Shift_Del	DEL	CA	TCGA-GI-A2C8-01A-11D-A16D-09	3897019	66458790	68547726	60	74305										
NDUFV1	0	genome.wustl.edu	37	chr11	67375917	67375917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctgaaggatgaagaccggatTttcaccaacctgtacggccg	11	11	1	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	67375917	67375917	T	G	SNP	NDUFV1	ENST00000322776	human	ensembl	69_37n	1	known	missense	c.123	p.I41M	0.987	tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	53	0	0	35	10	22.22	-	-	-	G	67375917	T	G	67375917	3	3	923	1	0	0	0	0	1	0	0	0	10371	1829	64	5	129	5	NDUFV1	11	67375917	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	917127	67375917	67630599	61	74306										
PRDM10	0	genome.wustl.edu	37	chr11	129817174	129817174	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cttcctctttggcctccagtCtgcctagaggggtctgcaga	11	13	3	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	129817174	129817174	C	A	SNP	PRDM10	ENST00000358825	human	ensembl	69_37n	-1	known	missense	c.386	p.R129I	0.765	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	104	0	0	70	16	18.6	-	-	-	A	129817174	C	A	129817174	3	1	923	1	0	0	0	0	1	0	0	0	12532	913	32	2	3168	2	PRDM10	11	129817174	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	62441257	129817174	5189342	62	74307										
VPS26B	0	genome.wustl.edu	37	chr11	134104809	134104809	+	Missense_Mutation	SNP	G	G	C													0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agaactctactacgatcgcgGgaaccaccatgagtttgtgt							TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	134104809	134104809	G	C	SNP	VPS26B	ENST00000281187	human	ensembl	69_37n	1	known	missense	c.242	p.G81A	1.000	pfam_VPS26,superfamily_Ig_E-set	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502	40	0	0	26	6	18.75	-	-	-	C	134104809	G	C	134104809	3	2	923	1	0	0	0	0	1	0	0	0	17295	1232	43	4	248	4	VPS26B	11	134104809	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	4287635	134104809	901707	63	74308	521	2								
VPS26B	0	genome.wustl.edu	37	chr11	134104810	134104810	+	Silent	SNP	G	G	T													0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gaactctactacgatcgcggGaaccaccatgagtttgtgtc							TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	134104810	134104810	G	T	SNP	VPS26B	ENST00000281187	human	ensembl	69_37n	1	known	silent	c.243	p.G81	0.997	pfam_VPS26,superfamily_Ig_E-set	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502	40	0	0	26	6	18.75	-	-	-	T	134104810	G	T	134104810	2	4	923	1	0	0	0	0	0	0	0	1	17295	1161	41	2		2	VPS26B	11	134104810	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	1	134104810	901706	64	74309	521	2								
CD163	0	genome.wustl.edu	37	chr12	7651707	7651707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atcacacactgttccccaccGtccttggaatttgatctcta	5	14	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	12	7651707	7651707	G	A	SNP	CD163	ENST00000359156	human	ensembl	69_37n	-1	known	missense	c.535	p.R179W	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD163	HGNC	ENSG00000177575	51	0	0	32	12	27.27	-	-	-	A	7651707	G	A	7651707	3	1	923	1	0	0	0	0	1	0	0	0	2996	1144	40	1	2987	1	CD163	12	7651707	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		7651707	126200188	65	74310										
C3AR1	0	genome.wustl.edu	37	chr12	8212311	8212311	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aagatttcccggtacacgaaCacaggaatgcacatcacaaa	7	11	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	12	8212311	8212311	C	A	SNP	C3AR1	ENST00000307637	human	ensembl	69_37n	-1	known	silent	c.471	p.V157	0.979	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_C3A_anaphtx_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Frt_met_rcpt,prints_C5A_anaphtx_rcpt	-	no_errors	C3AR1	HGNC	ENSG00000171860	69	0	0	53	12	18.46	-	-	-	A	8212311	C	A	8212311	2	1	923	1	0	0	0	0	0	0	0	1	2225	465	17	4		4	C3AR1	12	8212311	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	560604	8212311	125639584	66	74311										
GUCY2C	0	genome.wustl.edu	37	chr12	14849213	14849213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tttccagcccctcattcaccGcatcttccaagtttttcagg	5	15	4	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	12	14849213	14849213	G	A	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.170	p.A57V	0.013	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	100	0	0	61	12	16.44	-	-	-	A	14849213	G	A	14849213	3	1	923	1	0	0	0	0	1	0	0	0	6947	1087	38	1	3159	1	GUCY2C	12	14849213	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	6636902	14849213	119002682	67	74312										
ZC3H13	0	genome.wustl.edu	37	chr13	46619585	46619585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tacactgggtcttcgggatgTgctatcagatatagtcttgg	12	7	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	13	46619585	46619585	T	G	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.58	p.T20P	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	123	0	0	71	32	31.07	-	-	-	G	46619585	T	G	46619585	3	3	923	1	0	0	0	0	1	0	0	0	17661	1696	59	5	4700	5	ZC3H13	13	46619585	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09		46619585	68550293	68	74313										
IPO5	0	genome.wustl.edu	37	chr13	98671984	98671984	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttgaagaggtccttccacacTggttgtcttggcttccacta	9	11	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	13	98671984	98671984	T	C	SNP	IPO5	ENST00000261574	human	ensembl	69_37n	1	known	missense	c.3040	p.W1014R	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150	51	0	0	29	21	42	-	-	-	C	98671984	T	C	98671984	3	2	923	1	0	0	0	0	1	0	0	0	7850	1580	55	5	3138	5	IPO5	13	98671984	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	52052399	98671984	16497894	69	74314										
RNASE9	0	genome.wustl.edu	37	chr14	21024763	21024763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcccttcctataaagtgattCgtatttacacgctggtattt	7	9	0	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	21024763	21024763	C	T	SNP	RNASE9	ENST00000338904	human	ensembl	69_37n	-1	known	missense	c.466	p.E156K	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE9	HGNC	ENSG00000188655	61	0	0	28	14	33.33	-	-	-	T	21024763	C	T	21024763	3	4	923	1	0	0	0	0	1	0	0	0	13496	893	31	1	155	1	RNASE9	14	21024763	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		21024763	86324777	70	74315										
ACIN1	0	genome.wustl.edu	37	chr14	23564377	23564377	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cgggcatcttcggtaatttcCgccaacgcccttcgaacgta	9	14	1	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	23564377	23564377	C	A	SNP	ACIN1	ENST00000262710	human	ensembl	69_37n	-1	known	missense	c.119	p.R40L	1.000	NULL	pfam_SAP_DNA-bd,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	ACIN1	HGNC	ENSG00000100813	28	0	0	22	6	21.43	-	-	-	A	23564377	C	A	23564377	3	1	923	1	0	0	0	0	1	0	0	0	142	652	23	3	4129	3	ACIN1	14	23564377	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	2539614	23564377	83785163	71	74316										
HECTD1	0	genome.wustl.edu	37	chr14	31598424	31598424	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cacgctacacacagaactgcTgcttccttttctacttgagg	7	13	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	31598424	31598424	T	G	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	missense	c.4153	p.S1385R	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	83	0	0	42	13	23.64	-	-	-	G	31598424	T	G	31598424	3	3	923	1	0	0	0	0	1	0	0	0	7090	1580	55	5	3755	5	HECTD1	14	31598424	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	8034047	31598424	75751116	72	74317										
SLC24A4	0	genome.wustl.edu	37	chr14	92792293	92792293	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gatggccccagtgaatgggaCacagacagccaagaactgca	12	11	0	3			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	92792293	92792293	C	A	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.212	p.T71K	0.969	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	44	0	0	45	5	10	-	-	-	A	92792293	C	A	92792293	3	1	923	1	0	0	0	0	1	0	0	0	14557	478	17	4	167	4	SLC24A4	14	92792293	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	61193869	92792293	14557247	73	74318										
RYR3	0	genome.wustl.edu	37	chr15	33955918	33955918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cccggaagaccaaggagttcCgctcacccccacaggagcag	11	16	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	33955918	33955918	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.5599	p.R1867C	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	26	0	0	12	9	42.86	-	-	-	T	33955918	C	T	33955918	3	4	923	1	0	0	0	0	1	0	0	0	13856	652	23	1	5741	1	RYR3	15	33955918	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		33955918	68575474	74	74319										
USP3	0	genome.wustl.edu	37	chr15	63866266	63866266	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aatggagcatctactgttgtCacggctatattcggaggcat	11	8	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	63866266	63866266	C	T	SNP	USP3	ENST00000559257	human	ensembl	69_37n	1	known	missense	c.698	p.S233L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,pfscan_Peptidase_C19	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP3	HGNC	ENSG00000140455	68	0	0	54	24	30.38	-	-	-	T	63866266	C	T	63866266	3	4	923	1	0	0	0	0	1	0	0	0	17157	813	29	2	968	2	USP3	15	63866266	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	29910348	63866266	38665126	75	74320										
USP3	0	genome.wustl.edu	37	chr15	63866545	63866545	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tttcattagatattccaagtCagttcagaagtaagcgctct	7	8	4	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	63866545	63866545	C	T	SNP	USP3	ENST00000380324	human	ensembl	69_37n	1	known	nonsense	c.1039	p.Q347*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP3	HGNC	ENSG00000140455	117	0	0	114	45	28.3	-	-	-	T	63866545	C	T	63866545	4	4	923	1	0	0	0	0	0	1	0	0	17157	827	29	2	1081	2	USP3	15	63866545	Nonsense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	279	63866545	38664847	76	74321										
KLHL25	0	genome.wustl.edu	37	chr15	86311723	86311723	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	agagcttcagcttggcactcAccactgcggcattgctgacg	11	13	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	86311723	86311723	A	C	SNP	KLHL25	ENST00000337975	human	ensembl	69_37n	-1	known	missense	c.1319	p.V440G	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655	25	0	0	15	7	31.82	-	-	-	C	86311723	A	C	86311723	3	2	923	1	0	0	0	0	1	0	0	0	8433	159	6	5	454	5	KLHL25	15	86311723	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	22445178	86311723	16219669	77	74322										
SSTR5	0	genome.wustl.edu	37	chr16	1129135	1129135	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gcagtggccgacgtcctgtaCatgctggggctgcctttcct	13	13	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	1129135	1129135	C	T	SNP	SSTR5	ENST00000293897	human	ensembl	69_37n	1	known	silent	c.267	p.Y89	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	SSTR5	HGNC	ENSG00000162009	22	0	0	11	6	35.29	-	-	-	T	1129135	C	T	1129135	2	4	923	1	0	0	0	0	0	0	0	1	15292	489	17	4		4	SSTR5	16	1129135	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		1129135	89225618	78	74323										
CDH1	0	genome.wustl.edu	37	chr16	68847304	68847304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgcccccaataccccagcgtGggaggctgtatacaccatat	9	14	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	68847304	68847304	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.1226	p.W409L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	59	0	0	21	12	36.36	-	-	-	T	68847304	G	T	68847304	3	4	923	1	0	0	0	0	1	0	0	0	3124	1357	47	4	1260	4	CDH1	16	68847304	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	67718169	68847304	21507449	79	74324										
WDR59	0	genome.wustl.edu	37	chr16	74946204	74946204	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gggaacttcaccagcatcttGacacgatggttgctgcagtg	12	10	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	74946204	74946204	G	C	SNP	WDR59	ENST00000262144	human	ensembl	69_37n	-1	known	silent	c.1281	p.V427	0.996	superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_UBQ-conjugating_enzyme/RWD,smart_WD40_repeat,smart_RWD-domain,pfscan_RWD-domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR59	HGNC	ENSG00000103091	84	0	0	71	18	20.22	-	-	-	C	74946204	G	C	74946204	2	2	923	1	0	0	0	0	0	0	0	1	17405	1277	45	2		2	WDR59	16	74946204	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	6098900	74946204	15408549	80	74325										
KRT32	0	genome.wustl.edu	37	chr17	39622349	39622349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cccccgactgaactcacttgGccctgaagtcatcggcagcc	9	17	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	39622349	39622349	G	T	SNP	KRT32	ENST00000225899	human	ensembl	69_37n	-1	known	missense	c.548	p.A183D	0.999	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	61	0	0	26	12	30.77	-	-	-	T	39622349	G	T	39622349	3	4	923	1	0	0	0	0	1	0	0	0	8521	1203	42	4	822	4	KRT32	17	39622349	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		39622349	41572861	81	74326										
ABCA6	0	genome.wustl.edu	37	chr17	67081246	67081246	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tccaggtgttccctcaacgtCagcatgggccacagcacgtt	10	14	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	67081246	67081246	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4107	p.L1369	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	42	0	0	19	4	17.39	-	-	-	T	67081246	C	T	67081246	2	4	923	1	0	0	0	0	0	0	0	1	36	813	29	2		2	ABCA6	17	67081246	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	27458897	67081246	14113964	82	74327										
DNAH17	0	genome.wustl.edu	37	chr17	76567383	76567383	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tcagtgacgttggtgtaaacGttttgcagggctggccagta	14	7	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	76567383	76567383	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	silent	c.810	p.N270	0.012	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	88	0	0	30	14	31.82	-	-	-	A	76567383	G	A	76567383	2	1	923	1	0	0	0	0	0	0	0	1	4637	1136	40	1		1	DNAH17	17	76567383	Silent	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	9486137	76567383	4627827	83	74328										
ZNF333	0	genome.wustl.edu	37	chr19	14805918	14805918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgtgcaaatacaggatgcttGaccagtgcaggaccctggcc	12	11	0	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	14805918	14805918	G	C	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	missense	c.100	p.D34H	0.013	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	55	0	0	52	13	20	-	-	-	C	14805918	G	C	14805918	3	2	923	1	0	0	0	0	1	0	0	0	17946	1290	45	2	106	2	ZNF333	19	14805918	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09		14805918	44323065	84	74329										
ZNF333	0	genome.wustl.edu	37	chr19	14829928	14829928	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atgcatgccaggaatgcgggCgagcctttggtcagtcttca	13	10	3	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	14829928	14829928	C	T	SNP	ZNF333	ENST00000292530	human	ensembl	69_37n	1	known	nonsense	c.1789	p.R597*	0.877	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961	36	0	0	22	9	29.03	-	-	-	T	14829928	C	T	14829928	4	4	923	1	0	0	0	0	0	1	0	0	17946	760	27	1	1831	1	ZNF333	19	14829928	Nonsense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	24010	14829928	44299055	85	74330										
ZNF431	0	genome.wustl.edu	37	chr19	21365513	21365513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aatactgagaagatatggcaAatgtgaacatgagaatttac	9	4	0	4			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	21365513	21365513	A	G	SNP	ZNF431	ENST00000311048	human	ensembl	69_37n	1	known	missense	c.407	p.K136R	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	59	0	0	47	8	14.55	-	-	-	G	21365513	A	G	21365513	3	3	923	1	0	0	0	0	1	0	0	0	18001	14	1	5	425	5	ZNF431	19	21365513	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	6535585	21365513	37763470	86	74331										
C19orf76	0	genome.wustl.edu	37	chr19	50193508	50193508	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gccagccacgagccccaggaCccctacagctatgggcgccg	12	18	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	50193508	50193508	C	G	SNP	C19orf76	ENST00000420022	human	ensembl	69_37n	1	known	missense	c.220	p.P74A	0.986	NULL	NULL	-	no_errors	C19orf76	HGNC	ENSG00000224420	21	0	0	10	5	33.33	-	-	-	G	50193508	C	G	50193508	3	3	923	1	0	0	0	0	1	0	0	0	1969	507	18	4	226	4	C19orf76	19	50193508	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	28827995	50193508	8935475	87	74332										
ZNF841	0	genome.wustl.edu	37	chr19	52579393	52579393	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ctctttcccttgctccaacaTggagataatattcaggtcag	7	11	3	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	52579393	52579393	T	G	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.175	p.M59L	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	82	0	0	43	6	12.24	-	-	-	G	52579393	T	G	52579393	3	3	923	1	0	0	0	0	1	0	0	0	18282	1464	51	5	2607	5	ZNF841	19	52579393	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	2385885	52579393	6549590	88	74333										
CHD6	0	genome.wustl.edu	37	chr20	40118637	40118637	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	atggttttccctaggcccatCtcatcagccaaaatacagtt	6	12	2	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	20	40118637	40118637	C	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.1461	p.E487D	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	61	0	0	35	13	27.08	-	-	-	G	40118637	C	G	40118637	3	3	923	1	0	0	0	0	1	0	0	0	3358	912	32	2	6790	2	CHD6	20	40118637	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		40118637	22906883	89	74334										
ITSN1	0	genome.wustl.edu	37	chr21	35258721	35258721	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cgagacctggagcaggaagtCctctgcatcactgtgttcga	12	11	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	21	35258721	35258721	C	G	SNP	ITSN1	ENST00000381285	human	ensembl	69_37n	1	known	silent	c.4974	p.V1658	0.563	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,prints_SH3_domain,prints_p67phox,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ITSN1	HGNC	ENSG00000205726	56	0	0	42	12	22.22	-	-	-	G	35258721	C	G	35258721	2	3	923	1	0	0	0	0	0	0	0	1	7980	842	30	2		2	ITSN1	21	35258721	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		35258721	12871174	90	74335										
DGCR2	0	genome.wustl.edu	37	chr22	19052401	19052401	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aaagctccgctcgggctggtCccattcctgggccaggacaa	12	14	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	22	19052401	19052401	C	A	SNP	DGCR2	ENST00000263196	human	ensembl	69_37n	-1	known	missense	c.508	p.D170Y	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413	37	0	0	21	8	27.59	-	-	-	A	19052401	C	A	19052401	3	1	923	1	0	0	0	0	1	0	0	0	4497	855	30	2	1172	2	DGCR2	22	19052401	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		19052401	32252165	91	74336										
MEI1	0	genome.wustl.edu	37	chr22	42177711	42177711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gctgcagtgctcctgagcagCacaggcctgatggagcttct	13	12	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	22	42177711	42177711	C	T	SNP	MEI1	ENST00000401548	human	ensembl	69_37n	1	known	silent	c.2949	p.S983	0.579	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	35	0	0	15	7	31.82	-	-	-	T	42177711	C	T	42177711	2	4	923	1	0	0	0	0	0	0	0	1	9536	709	25	4		4	MEI1	22	42177711	Silent	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	23125310	42177711	9126855	92	74337										
NLGN4X	0	genome.wustl.edu	37	chrX	5821686	5821686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	gtctgggatgacgtcgccgtCgatcaccggcccgaaggcta	14	13	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	5821686	5821686	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.1093	p.D365N	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	47	0	0	48	8	14.29	-	-	-	T	5821686	C	T	5821686	3	4	923	1	0	0	0	0	1	0	0	0	10536	884	31	1	1425	1	NLGN4X	23	5821686	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09		5821686	149448874	93	74338										
BEND2	0	genome.wustl.edu	37	chrX	18221806	18221806	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tgacagcattggtactttcaGcacctccactgataaagttc	7	11	1	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18221806	18221806	G	C	SNP	BEND2	ENST00000380033	human	ensembl	69_37n	-1	known	missense	c.722	p.A241G	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	54	0	0	32	21	39.62	-	-	-	C	18221806	G	C	18221806	3	2	923	1	0	0	0	0	1	0	0	0	1402	971	34	4	1743	4	BEND2	23	18221806	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	12400120	18221806	137048754	94	74339										
SCML2	0	genome.wustl.edu	37	chrX	18342120	18342120	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cctggccccagtaattccaaTaaccgtagcaatacatactg	6	13	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18342120	18342120	T	C	SNP	SCML2	ENST00000251900	human	ensembl	69_37n	-1	known	missense	c.256	p.I86V	0.394	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098	57	0	0	43	15	25.86	-	-	-	C	18342120	T	C	18342120	3	2	923	1	0	0	0	0	1	0	0	0	13998	1406	49	5	1890	5	SCML2	23	18342120	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	120314	18342120	136928440	95	74340										
PHKA2	0	genome.wustl.edu	37	chrX	18961899	18961899	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tccatgggctccaaaaaggtCcagttcatcaattgcctcaa	7	12	3	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18961899	18961899	C	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.646	p.D216Y	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	96	0	0	51	22	30.14	-	-	-	A	18961899	C	A	18961899	3	1	923	1	0	0	0	0	1	0	0	0	11918	855	30	2	3169	2	PHKA2	23	18961899	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	619779	18961899	136308661	96	74341										
CACNA1F	0	genome.wustl.edu	37	chrX	49074448	49074448	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	tggtccggatggccacaaatAcacactgcaccacatgctgc	9	14	0	0			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	49074448	49074448	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.2978	p.V993E	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	60	0	0	36	14	28	-	-	-	T	49074448	A	T	49074448	3	4	923	1	0	0	0	0	1	0	0	0	2568	391	14	5	3051	5	CACNA1F	23	49074448	Missense_Mutation	SNP	A	TCGA-GI-A2C8-01A-11D-A16D-09	30112549	49074448	106196112	97	74342										
PHF8	0	genome.wustl.edu	37	chrX	53966853	53966853	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	cacagtgggggctggtactgTcagactgagattggagtctt	15	7	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	53966853	53966853	T	A	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.2854	p.T952S	0.012	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	78	0	0	46	10	17.86	-	-	-	A	53966853	T	A	53966853	3	1	923	1	0	0	0	0	1	0	0	0	11914	1667	58	5	419	5	PHF8	23	53966853	Missense_Mutation	SNP	T	TCGA-GI-A2C8-01A-11D-A16D-09	4892405	53966853	101303707	98	74343										
COL4A6	0	genome.wustl.edu	37	chrX	107436869	107436869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aagttgcacctgagatcacaGcaccatctatatcgatgaaa	7	10	2	2			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	107436869	107436869	G	T	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	missense	c.1064	p.A355D	0.995	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	51	0	0	33	4	10.81	-	-	-	T	107436869	G	T	107436869	3	4	923	1	0	0	0	0	1	0	0	0	3725	971	34	4	4127	4	COL4A6	23	107436869	Missense_Mutation	SNP	G	TCGA-GI-A2C8-01A-11D-A16D-09	53470016	107436869	47833691	99	74344										
GRIA3	0	genome.wustl.edu	37	chrX	122319694	122319694	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	ttgcttataggtggacttttCatgagaaacacagtgcagga	11	6	1	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	122319694	122319694	C	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.120	p.F40L	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	53	0	0	25	6	19.35	-	-	-	A	122319694	C	A	122319694	3	1	923	1	0	0	0	0	1	0	0	0	6820	825	29	2	126	2	GRIA3	23	122319694	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	14882825	122319694	32950866	100	74345										
ARHGEF6	0	genome.wustl.edu	37	chrX	135767916	135767916	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12	12	0.15516540792361	1.70914285714286	3.35126050420168	0.863203463203463	0.273369766729538	0.930327025915261	0	aatatcttctccttcccatgCctgaataggttcggacagta	7	11	2	1			TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	135767916	135767916	C	G	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.1312	p.A438P	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	127	0	0	75	15	16.67	-	-	-	G	135767916	C	G	135767916	3	3	923	1	0	0	0	0	1	0	0	0	912	739	26	4	1062	4	ARHGEF6	23	135767916	Missense_Mutation	SNP	C	TCGA-GI-A2C8-01A-11D-A16D-09	13448222	135767916	19502644	101	74346										
C1orf127	0	genome.wustl.edu	37	chr1	11014110	11014110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aagctctccactgtccagagGaccggggcagccatctcggc	12	15	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	11014110	11014110	G	A	SNP	C1orf127	ENST00000520253	human	ensembl	69_37n	-1	putative	missense	c.998	p.S333F	0.000	NULL	superfamily_DNA-bd_dom_put	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf127	HGNC	ENSG00000175262	49	0	0	18	13	41.94	-	-	-	A	11014110	G	A	11014110	3	1	924	1	0	0	0	0	1	0	0	0	2013	1161	41	2	1418	2	C1orf127	1	11014110	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		11014110	238236511	1	74347										
GRIK3	0	genome.wustl.edu	37	chr1	37356521	37356521	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggcaggagctgcacactcacCctttttggtcgcctcgaagc	11	14	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	37356521	37356521	C	A	SNP	GRIK3	ENST00000373091	human	ensembl	69_37n	-1	known	missense	c.292	p.A98S	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	95	0	0	53	9	14.52	-	-	-	A	37356521	C	A	37356521	3	1	924	1	0	0	0	0	1	0	0	0	6826	637	22	4	2527	4	GRIK3	1	37356521	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	26342411	37356521	211894100	2	74348										
MACF1	0	genome.wustl.edu	37	chr1	39793021	39793021	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gttggctcaccagacagaacAaaaggtacttttagttttca	8	8	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	39793021	39793021	A	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.4625	p.Q1542P	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	32	0	0	28	10	26.32	-	-	-	C	39793021	A	C	39793021	3	2	924	1	0	0	0	0	1	0	0	0	9211	130	5	5	4763	5	MACF1	1	39793021	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	2436500	39793021	209457600	3	74349										
ZMPSTE24	0	genome.wustl.edu	37	chr1	40723983	40723983	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tggacgctttgtgggagatgCcggccgagaagcgtatcttc	15	9	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	40723983	40723983	C	G	SNP	ZMPSTE24	ENST00000372759	human	ensembl	69_37n	1	known	missense	c.40	p.P14A	1.000	NULL	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073	33	0	0	38	10	20.83	-	-	-	G	40723983	C	G	40723983	3	3	924	1	0	0	0	0	1	0	0	0	17794	739	26	4	42	4	ZMPSTE24	1	40723983	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	930962	40723983	208526638	4	74350										
ATP6V0B	0	genome.wustl.edu	37	chr1	44440642	44440642	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcgggcggacagactgcgggAcggacggtggacgctgggac	21	10	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	44440642	44440642	A	G	SNP	ATP6V0B	ENST00000472277	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.363	-	-	-	no_errors	ATP6V0B	HGNC	ENSG00000117410	8	0	0	2	4	66.67	-	-	-	G	44440642	A	G	44440642	1	3	924	0	1	0	0	0	0	0	0	0	1175	290	10	5		5	ATP6V0B	1	44440642	RNA	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	3716659	44440642	204809979	5	74351										
CD53	0	genome.wustl.edu	37	chr1	111440293	111440293	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgcctgtttcttcattcacgCaaagaaaataaaaatataat	4	7	3	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	111440293	111440293	C	G	SNP	CD53	ENST00000464329	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD53	HGNC	ENSG00000143119	15	0	0	11	5	31.25	-	-	-	G	111440293	C	G	111440293	1	3	924	0	1	0	0	0	0	0	0	0	3052	725	25	4		4	CD53	1	111440293	RNA	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	66999651	111440293	137810328	6	74352										
IQGAP3	0	genome.wustl.edu	37	chr1	156536205	156536205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gtaccgcagctgctccacatCgtagatcttcttcaagggaa	9	12	3	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	156536205	156536205	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	missense	c.259	p.D87N	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	25	0	0	18	12	40	-	-	-	T	156536205	C	T	156536205	3	4	924	1	0	0	0	0	1	0	0	0	7870	884	31	1	4780	1	IQGAP3	1	156536205	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	45095912	156536205	92714416	7	74353										
PEAR1	0	genome.wustl.edu	37	chr1	156883526	156883526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctacagctatagctacagcaAtggcccaggcccattctaca	7	14	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	156883526	156883526	A	G	SNP	PEAR1	ENST00000292357	human	ensembl	69_37n	1	known	missense	c.2687	p.N896S	0.004	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	42	0	0	43	10	18.87	-	-	-	G	156883526	A	G	156883526	3	3	924	1	0	0	0	0	1	0	0	0	11785	101	4	5	2765	5	PEAR1	1	156883526	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	347321	156883526	92367095	8	74354										
MPZL1	0	genome.wustl.edu	37	chr1	167757608	167757608	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggaggatggagatgctatgaTggaagcatacccagggtggc	17	6	0	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	167757608	167757608	T	C	SNP	MPZL1	ENST00000403379	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MPZL1	HGNC	ENSG00000197965	33	0	0	31	4	11.43	-	-	-	C	167757608	T	C	167757608	1	2	924	0	1	0	0	0	0	0	0	0	9821	1479	51	5		5	MPZL1	1	167757608	RNA	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	10874082	167757608	81493013	9	74355										
ASTN1	0	genome.wustl.edu	37	chr1	176852105	176852105	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gactttgctccagagatgatGtcgtccacaaagctcagcac	9	12	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	176852105	176852105	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.3276	p.D1092E	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	62	0	0	33	7	17.5	-	-	-	T	176852105	G	T	176852105	3	4	924	1	0	0	0	0	1	0	0	0	1068	1368	48	4	652	4	ASTN1	1	176852105	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	9094497	176852105	72398516	10	74356										
SLC41A1	0	genome.wustl.edu	37	chr1	205760830	205760830	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcaccatccagtctgcgatgTacaggagaatcagcacctgg	11	12	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	205760830	205760830	T	G	SNP	SLC41A1	ENST00000367137	human	ensembl	69_37n	-1	known	missense	c.1373	p.Y458S	1.000	pfam_MgtE_Mg_transptr_membr	pfam_MgtE_Mg_transptr_membr	-	no_errors	SLC41A1	HGNC	ENSG00000133065	113	1	0.88	56	29	34.12	-	-	-	G	205760830	T	G	205760830	3	3	924	1	0	0	0	0	1	0	0	0	14718	1638	57	5	172	5	SLC41A1	1	205760830	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	28908725	205760830	43489791	11	74357										
SLC26A9	0	genome.wustl.edu	37	chr1	205895727	205895727	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gttgcttgagggagttcttgAgattgacagcgatcagggct	15	6	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	205895727	205895727	A	G	SNP	SLC26A9	ENST00000340781	human	ensembl	69_37n	-1	known	missense	c.1325	p.L442P	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502	83	0	0	38	26	40.62	-	-	-	G	205895727	A	G	205895727	3	3	924	1	0	0	0	0	1	0	0	0	14613	304	11	5	1386	5	SLC26A9	1	205895727	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	134897	205895727	43354894	12	74358										
OBSCN	0	genome.wustl.edu	37	chr1	228496062	228496062	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	catttgggaaaccatgcttcCtctgcccagctcaccgtcag	8	15	3	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	1	228496062	228496062	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.12717	p.S4239	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	66	0	0	72	9	11.11	-	-	-	T	228496062	C	T	228496062	2	4	924	1	0	0	0	0	0	0	0	1	10885	668	24	4		4	OBSCN	1	228496062	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	22600335	228496062	20754559	13	74359										
RAD51AP2	0	genome.wustl.edu	37	chr2	17698740	17698740	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gttttccgcttctacagtttTtttatcattctgtaactttt	4	8	3	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	17698740	17698740	T	A	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	nonsense	c.943	p.K315*	0.946	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	81	0	0	98	12	10.91	-	-	-	A	17698740	T	A	17698740	4	1	924	1	0	0	0	0	0	1	0	0	13070	1850	64	5	2548	5	RAD51AP2	2	17698740	Nonsense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		17698740	225500633	14	74360										
ALK	0	genome.wustl.edu	37	chr2	29420462	29420462	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggcctccactggtgacaaacTccagaacttcctggttgctt	9	13	0	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	29420462	29420462	T	A	SNP	ALK	ENST00000389048	human	ensembl	69_37n	-1	known	missense	c.4019	p.E1340V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	45	0	0	39	7	14.89	-	-	-	A	29420462	T	A	29420462	3	1	924	1	0	0	0	0	1	0	0	0	525	1551	54	5	855	5	ALK	2	29420462	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	11721722	29420462	213778911	15	74361										
SNRNP200	0	genome.wustl.edu	37	chr2	96952447	96952447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gagccagcggtcagacaccaCtcggatgaagtactgagggg	15	10	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	96952447	96952447	C	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.3808	p.V1270M	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	49	0	0	21	11	34.38	-	-	-	T	96952447	C	T	96952447	3	4	924	1	0	0	0	0	1	0	0	0	14941	565	20	4	2674	4	SNRNP200	2	96952447	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	67531985	96952447	146246926	16	74362										
ANKRD36	0	genome.wustl.edu	37	chr2	97860487	97860487	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ttctcggaaaaaaccagcctTgaaggtaatgaaactctcat	7	9	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	97860487	97860487	T	C	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.2474	p.L825S	0.064	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	120	0	0	112	13	10.4	-	-	-	C	97860487	T	C	97860487	3	2	924	1	0	0	0	0	1	0	0	0	664	1821	63	5	2628	5	ANKRD36	2	97860487	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	908040	97860487	145338886	17	74363										
PLEKHB2	0	genome.wustl.edu	37	chr2	131890565	131890565	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atgctgcaccggcccctgagGtagggagaaccctgagcctc	13	14	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	131890565	131890565	G	T	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	1	known	splice_site	c.423+1	e5+1	1.000	-	-	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	48	0	0	35	4	10.26	-	-	-	T	131890565	G	T	131890565	5	4	924	1	0	0	0	0	0	0	1	0	12139	1275	44	4	442	4	PLEKHB2	2	131890565	Splice_Site	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	34030078	131890565	111308808	18	74364										
THSD7B	0	genome.wustl.edu	37	chr2	137988746	137988746	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctgttcccagtcctgttcaaAtaaaaactcagatgggaaac	7	10	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	137988746	137988746	A	G	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.1856	p.N619S	0.989	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	50	0	0	40	5	11.11	-	-	-	G	137988746	A	G	137988746	3	3	924	1	0	0	0	0	1	0	0	0	15975	101	4	5	1789	5	THSD7B	2	137988746	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	6098181	137988746	105210627	19	74365										
LRP1B	0	genome.wustl.edu	37	chr2	141032147	141032147	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggtacatgattcagaattcaCacaatagtggtggcacacgt	10	8	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	141032147	141032147	C	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12988	p.V4330L	1.000	smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	59	0	0	45	9	16.67	-	-	-	A	141032147	C	A	141032147	3	1	924	1	0	0	0	0	1	0	0	0	9021	478	17	4	839	4	LRP1B	2	141032147	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	3043401	141032147	102167226	20	74366										
RIF1	0	genome.wustl.edu	37	chr2	152266473	152266473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cgtgagtaaacagccggagcTgggaaagtcgagctctggca	15	9	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	152266473	152266473	T	C	SNP	RIF1	ENST00000414861	human	ensembl	69_37n	1	novel	missense	c.4	p.W2R	0.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIF1	HGNC	ENSG00000080345	41	0	0	52	6	10.34	-	-	-	C	152266473	T	C	152266473	3	2	924	1	0	0	0	0	1	0	0	0	13443	1595	55	5		5	RIF1	2	152266473	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	11234326	152266473	90932900	21	74367										
KCNJ3	0	genome.wustl.edu	37	chr2	155711382	155711382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	catttgaagtccccaccccaCcttacagtgtgaaagagcag	8	13	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	155711382	155711382	C	A	SNP	KCNJ3	ENST00000295101	human	ensembl	69_37n	1	known	missense	c.1063	p.P355T	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ3	HGNC	ENSG00000162989	69	0	0	52	8	13.33	-	-	-	A	155711382	C	A	155711382	3	1	924	1	0	0	0	0	1	0	0	0	8106	507	18	4	1073	4	KCNJ3	2	155711382	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	3444909	155711382	87487991	22	74368										
ACVR1C	0	genome.wustl.edu	37	chr2	158412843	158412843	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agttttggggcatttggtgaTgctacagtttaaagaagaaa	12	3	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	158412843	158412843	T	G	SNP	ACVR1C	ENST00000243349	human	ensembl	69_37n	-1	known	silent	c.306	p.A102	0.457	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612	38	0	0	31	19	38	-	-	-	G	158412843	T	G	158412843	2	3	924	1	0	0	0	0	0	0	0	1	222	1478	51	5		5	ACVR1C	2	158412843	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	2701461	158412843	84786530	23	74369										
LY75	0	genome.wustl.edu	37	chr2	160714973	160714973	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaatgccagcctcttcgccaTggcctatgaaatacctataa	6	12	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	160714973	160714973	T	A	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	silent	c.2283	p.P761	0.123	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	37	0	0	21	13	38.24	-	-	-	A	160714973	T	A	160714973	2	1	924	1	0	0	0	0	0	0	0	1	9166	1451	51	5		5	LY75	2	160714973	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	2302130	160714973	82484400	24	74370										
SESTD1	0	genome.wustl.edu	37	chr2	180014054	180014054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cttgctgatttcctttatcaCttccattgttaatcaaagca	4	10	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	180014054	180014054	C	T	SNP	SESTD1	ENST00000428443	human	ensembl	69_37n	-1	known	missense	c.551	p.S184N	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231	79	0	0	76	34	30.91	-	-	-	T	180014054	C	T	180014054	3	4	924	1	0	0	0	0	1	0	0	0	14215	565	20	4	1587	4	SESTD1	2	180014054	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	19299081	180014054	63185319	25	74371										
ALS2CR11	0	genome.wustl.edu	37	chr2	202357128	202357128	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcttttagatgtaataattcAttttctgataaagctatcag	6	5	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	202357128	202357128	A	C	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.3936	p.N1312K	0.944	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	19	0	0	19	11	36.67	-	-	-	C	202357128	A	C	202357128	3	2	924	1	0	0	0	0	1	0	0	0	552	214	8	5	1534	5	ALS2CR11	2	202357128	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	22343074	202357128	40842245	26	74372										
SLC4A3	0	genome.wustl.edu	37	chr2	220495072	220495072	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgcagacctggacgacatgaAgagtgagtgagaccttgtgg	15	7	0	5			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	220495072	220495072	A	G	SNP	SLC4A3	ENST00000273063	human	ensembl	69_37n	1	known	missense	c.890	p.K297R	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	22	0	0	9	3	25	-	-	-	G	220495072	A	G	220495072	3	3	924	1	0	0	0	0	1	0	0	0	14744	72	3	5	908	5	SLC4A3	2	220495072	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	18137944	220495072	22704301	27	74373										
UGT1A7	0	genome.wustl.edu	37	chr2	234590970	234590970	+	Missense_Mutation	SNP	T	T	G													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aattgcaggagtttgtttaaTgaccgaaaattagtagaata							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	234590970	234590970	T	G	SNP	UGT1A7	ENST00000373426	human	ensembl	69_37n	1	known	missense	c.387	p.N129K	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A7	HGNC	ENSG00000244122	56	0	0	42	5	10.64	-	-	-	G	234590970	T	G	234590970	3	3	924	1	0	0	0	0	1	0	0	0	17047	1461	51	5	389	5	UGT1A7	2	234590970	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	14095898	234590970	8608403	28	74374	522	3								
UGT1A7	0	genome.wustl.edu	37	chr2	234590974	234590974	+	Silent	SNP	C	C	A													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcaggagtttgtttaatgacCgaaaattagtagaatactta							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	234590974	234590974	C	A	SNP	UGT1A7	ENST00000373426	human	ensembl	69_37n	1	known	silent	c.391	p.R131	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A7	HGNC	ENSG00000244122	56	0	0	40	5	11.11	-	-	-	A	234590974	C	A	234590974	2	1	924	1	0	0	0	0	0	0	0	1	17047	644	23	3		3	UGT1A7	2	234590974	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	4	234590974	8608399	29	74375	522	3								
UGT1A7	0	genome.wustl.edu	37	chr2	234590975	234590975	+	Missense_Mutation	SNP	G	G	A													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	caggagtttgtttaatgaccGaaaattagtagaatacttaa							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	2	234590975	234590975	G	A	SNP	UGT1A7	ENST00000373426	human	ensembl	69_37n	1	known	missense	c.392	p.R131Q	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A7	HGNC	ENSG00000244122	56	0	0	40	5	11.11	-	-	-	A	234590975	G	A	234590975	3	1	924	1	0	0	0	0	1	0	0	0	17047	1058	37	1	394	1	UGT1A7	2	234590975	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	1	234590975	8608398	30	74376	522	3								
XYLB	0	genome.wustl.edu	37	chr3	38390113	38390113	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgcattttgacagagatcttCcagaatttgggtatgtactt	9	6	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	3	38390113	38390113	C	A	SNP	XYLB	ENST00000207870	human	ensembl	69_37n	1	known	missense	c.130	p.P44T	1.000	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217	127	0	0	63	20	24.1	-	-	-	A	38390113	C	A	38390113	3	1	924	1	0	0	0	0	1	0	0	0	17559	855	30	2	136	2	XYLB	3	38390113	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09		38390113	159632317	31	74377										
CLEC3B	0	genome.wustl.edu	37	chr3	45072372	45072372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agagccgtctggacaccctgGcccaggaggtggccctgctg	15	14	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	3	45072372	45072372	G	T	SNP	CLEC3B	ENST00000296130	human	ensembl	69_37n	1	known	missense	c.163	p.A55S	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Pancreatis_ac	-	no_errors	CLEC3B	HGNC	ENSG00000163815	47	0	0	10	7	41.18	-	-	-	T	45072372	G	T	45072372	3	4	924	1	0	0	0	0	1	0	0	0	3541	1203	42	4	169	4	CLEC3B	3	45072372	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	6682259	45072372	152950058	32	74378										
AGTR1	0	genome.wustl.edu	37	chr3	148459738	148459738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctcttttttatggctttctgGggaaaaaatttaaaagatat	7	4	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	3	148459738	148459738	G	T	SNP	AGTR1	ENST00000349243	human	ensembl	69_37n	1	known	missense	c.916	p.G306W	1.000	prints_ATII_AT1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Frt_met_rcpt,prints_Brdyknn_rcpt,prints_P2_purnocptor	-	no_errors	AGTR1	HGNC	ENSG00000144891	22	0	0	20	15	42.86	-	-	-	T	148459738	G	T	148459738	3	4	924	1	0	0	0	0	1	0	0	0	401	1232	43	4	918	4	AGTR1	3	148459738	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	103387366	148459738	49562692	33	74379										
IGSF10	0	genome.wustl.edu	37	chr3	151164277	151164277	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcttcattggtgctagacacAcgtgggtaactggcgtttac	12	9	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	3	151164277	151164277	A	C	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	silent	c.3492	p.R1164	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	123	0	0	82	63	43.15	-	-	-	C	151164277	A	C	151164277	2	2	924	1	0	0	0	0	0	0	0	1	7651	146	6	5		5	IGSF10	3	151164277	Silent	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	2704539	151164277	46858153	34	74380										
EIF4A2	0	genome.wustl.edu	37	chr3	186504432	186504432	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tttatattaatgttgagagaGaggtaactgtctgattgtta	10	2	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	3	186504432	186504432	G	C	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	1	known	missense	c.772	p.E258Q	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	48	0	0	61	7	10.29	-	-	-	C	186504432	G	C	186504432	3	2	924	1	0	0	0	0	1	0	0	0	5062	943	33	2	795	2	EIF4A2	3	186504432	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	35340155	186504432	11517998	35	74381										
CENPE	0	genome.wustl.edu	37	chr4	104079587	104079587	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gtttcagagactcaagagcaTttcgtaattgttcttgagta	9	6	3	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	4	104079587	104079587	T	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.2903	p.N968T	0.997	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	16	0	0	19	5	20.83	-	-	-	G	104079587	T	G	104079587	3	3	924	1	0	0	0	0	1	0	0	0	3259	1493	52	5	5306	5	CENPE	4	104079587	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		104079587	87074689	36	74382										
TRIM2	0	genome.wustl.edu	37	chr4	154178697	154178697	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ttcctctgttctgtgcatgaActggcacatcactacttaga	7	11	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	4	154178697	154178697	A	G	SNP	TRIM2	ENST00000502281	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.156	-	-	-	no_errors	TRIM2	HGNC	ENSG00000109654	75	0	0	29	6	17.14	-	-	-	G	154178697	A	G	154178697	1	3	924	0	1	0	0	0	0	0	0	0	16590	58	2	5		5	TRIM2	4	154178697	RNA	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	50099110	154178697	36975579	37	74383										
C7	0	genome.wustl.edu	37	chr5	40981594	40981594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaggagcagacgatgtctgaGtgtgaggcgggcgctctgag	18	7	2	4			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	5	40981594	40981594	G	T	SNP	C7	ENST00000313164	human	ensembl	69_37n	1	known	missense	c.2451	p.E817D	0.997	smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	41	0	0	33	8	19.51	-	-	-	T	40981594	G	T	40981594	3	4	924	1	0	0	0	0	1	0	0	0	2398	1020	36	4	2521	4	C7	5	40981594	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		40981594	139933666	38	74384										
EPB41L4A	0	genome.wustl.edu	37	chr5	111481600	111481600	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cccagccccaatatcacttcAtccagaagtgtattatgaga	6	12	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	5	111481600	111481600	A	T	SNP	EPB41L4A	ENST00000507810	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	62	0	0	32	5	13.51	-	-	-	T	111481600	A	T	111481600	1	4	924	0	1	0	0	0	0	0	0	0	5192	232	8	5		5	EPB41L4A	5	111481600	RNA	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	70500006	111481600	69433660	39	74385										
PSD2	0	genome.wustl.edu	37	chr5	139193041	139193041	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	acggatgagagcgacagctgCgtcagcttcgaggcccccct	13	14	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	5	139193041	139193041	C	T	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	silent	c.519	p.C173	0.704	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	43	0	0	35	6	14.63	-	-	-	T	139193041	C	T	139193041	2	4	924	1	0	0	0	0	0	0	0	1	12727	776	27	1		1	PSD2	5	139193041	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	27711441	139193041	41722219	40	74386										
FCHSD1	0	genome.wustl.edu	37	chr5	141025453	141025453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agcgctccacatctaagccaGccccctgcagcagggccagc	10	18	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	5	141025453	141025453	G	A	SNP	FCHSD1	ENST00000435817	human	ensembl	69_37n	-1	known	missense	c.1196	p.A399V	0.997	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948	65	0	0	14	20	58.82	-	-	-	A	141025453	G	A	141025453	3	1	924	1	0	0	0	0	1	0	0	0	5835	971	34	4	908	4	FCHSD1	5	141025453	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	1832412	141025453	39889807	41	74387										
TRIM41	0	genome.wustl.edu	37	chr5	180657808	180657808	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggcagtgcagaagatgaaagCcaaggaggagaggcgagtga	18	5	0	5			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	5	180657808	180657808	C	G	SNP	TRIM41	ENST00000315073	human	ensembl	69_37n	1	known	missense	c.878	p.A293G	1.000	pfam_DUF3631	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063	84	0	0	20	27	56.25	-	-	-	G	180657808	C	G	180657808	3	3	924	1	0	0	0	0	1	0	0	0	16612	739	26	4	884	4	TRIM41	5	180657808	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	39632355	180657808	257452	42	74388										
ZNF311	0	genome.wustl.edu	37	chr6	28963898	28963898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tctcccctgtgtggattatcCggtgcatagaaagctgattt	10	9	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	28963898	28963898	C	T	SNP	ZNF311	ENST00000377179	human	ensembl	69_37n	-1	known	missense	c.881	p.R294Q	0.864	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935	90	0	0	65	15	18.75	-	-	-	T	28963898	C	T	28963898	3	4	924	1	0	0	0	0	1	0	0	0	17930	652	23	1	1123	1	ZNF311	6	28963898	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09		28963898	142151169	43	74389										
PNPLA1	0	genome.wustl.edu	37	chr6	36259244	36259244	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctcctacaaggtcaccacggGgaagctccatgtgagcctca	10	14	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	36259244	36259244	G	C	SNP	PNPLA1	ENST00000457797	human	ensembl	69_37n	1	known	missense	c.353	p.G118A	0.985	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316	48	0	0	44	13	22.81	-	-	-	C	36259244	G	C	36259244	3	2	924	1	0	0	0	0	1	0	0	0	12238	1232	43	4	359	4	PNPLA1	6	36259244	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	7295346	36259244	134855823	44	74390										
EYS	0	genome.wustl.edu	37	chr6	64436412	64436412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaacagcctgccaatcttacCtgattgggcttttaagtgtt	8	9	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	64436412	64436412	C	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.8296	p.G2766R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	36	0	0	27	5	15.62	-	-	-	G	64436412	C	G	64436412	3	3	924	1	0	0	0	0	1	0	0	0	5369	695	24	4	1209	4	EYS	6	64436412	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	28177168	64436412	106678655	45	74391										
MTO1	0	genome.wustl.edu	37	chr6	74207461	74207461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tctgattttgttgaccagccActtatgaatcagtgttgttc	8	8	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	74207461	74207461	A	G	SNP	MTO1	ENST00000415954	human	ensembl	69_37n	1	known	missense	c.1879	p.T627A	0.921	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297	49	0	0	41	14	25.45	-	-	-	G	74207461	A	G	74207461	3	3	924	1	0	0	0	0	1	0	0	0	10025	159	6	5	2004	5	MTO1	6	74207461	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	9771049	74207461	96907606	46	74392										
MAP3K7	0	genome.wustl.edu	37	chr6	91226129	91226129	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	attcagaacacgccaaaaagCtaacactcatgaatcgtcat	5	11	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	91226129	91226129	C	G	SNP	MAP3K7	ENST00000479630	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341	12	0	0	4	11	73.33	-	-	-	G	91226129	C	G	91226129	1	3	924	0	1	0	0	0	0	0	0	0	9326	812	28	4		4	MAP3K7	6	91226129	RNA	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	17018668	91226129	79888938	47	74393										
MICAL1	0	genome.wustl.edu	37	chr6	109767568	109767568	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ccctcctgcgaggctgtgggAgttgagaggcctggtggcat	17	10	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	109767568	109767568	A	G	SNP	MICAL1	ENST00000368952	human	ensembl	69_37n	-1	known	silent	c.2409	p.T803	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596	65	0	0	70	9	11.39	-	-	-	G	109767568	A	G	109767568	2	3	924	1	0	0	0	0	0	0	0	1	9640	291	11	5		5	MICAL1	6	109767568	Silent	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	18541439	109767568	61347499	48	74394										
MAP3K5	0	genome.wustl.edu	37	chr6	137018482	137018482	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tttaccagtgtataaattacGagctttcctgatgtcattga	7	7	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	137018482	137018482	G	C	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.850	p.R284G	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	27	0	0	16	13	44.83	-	-	-	C	137018482	G	C	137018482	3	2	924	1	0	0	0	0	1	0	0	0	9324	1058	37	3	3378	3	MAP3K5	6	137018482	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	27250914	137018482	34096585	49	74395										
HIVEP2	0	genome.wustl.edu	37	chr6	143092672	143092672	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctctccctggacggtgatacCgtggaggctgctgctcccga	13	14	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	6	143092672	143092672	C	G	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	silent	c.3204	p.T1068	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	49	0	0	19	18	47.37	-	-	-	G	143092672	C	G	143092672	2	3	924	1	0	0	0	0	0	0	0	1	7238	639	23	3		3	HIVEP2	6	143092672	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	6074190	143092672	28022395	50	74396										
FAM20C	0	genome.wustl.edu	37	chr7	195732	195735	+	Frame_Shift_Del	DEL	GGTA	GGTA	-													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cccagaggatcaccagcgtgGgtaggtgtccttgggtgcac							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	GGTA	GGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	195732	195735	GGTA	-	DEL	FAM20C	ENST00000313766	human	ensembl	69_37n	1	known	frame_shift_del	c.784	p.A262fs	1.000	NULL	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	43	0	0	30	4	11.43	-	-	-	-	195735	GGTA	-	195732	7	5	924	1	0	1	0	1	0	0	0	0	5581	1246	43	0	790	0	FAM20C	7	195732	Frame_Shift_Del	DEL	GGTA	TCGA-GI-A2C9-01A-11D-A21Q-09		195732	158942931	51	74397										
SNX8	0	genome.wustl.edu	37	chr7	2294716	2294716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gaggacacaggccgtcctccGgcggggagcacggtggggtc	19	12	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	2294716	2294716	G	A	SNP	SNX8	ENST00000222990	human	ensembl	69_37n	-1	known	missense	c.1373	p.P458L	0.126	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266	133	0	0	53	7	11.67	-	-	-	A	2294716	G	A	2294716	3	1	924	1	0	0	0	0	1	0	0	0	14997	1116	39	1	28	1	SNX8	7	2294716	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	2098984	2294716	156843947	52	74398										
THSD7A	0	genome.wustl.edu	37	chr7	11486990	11486990	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gtaagggctggcacagggccTgcatactgtaggcactcatg	14	10	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	11486990	11486990	T	G	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.2667	p.A889	0.804	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	55	0	0	25	8	24.24	-	-	-	G	11486990	T	G	11486990	2	3	924	1	0	0	0	0	0	0	0	1	15974	1567	55	5		5	THSD7A	7	11486990	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	9192274	11486990	147651673	53	74399										
INMT	0	genome.wustl.edu	37	chr7	30795547	30795547	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gagaggggtgaggaatggatActgtctaacagtctctgatt	14	5	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	30795547	30795547	A	G	SNP	INMT	ENST00000484180	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	INMT	HGNC	ENSG00000241644	9	0	0	7	5	41.67	-	-	-	G	30795547	A	G	30795547	1	3	924	0	1	0	0	0	0	0	0	0	7799	406	14	5		5	INMT	7	30795547	RNA	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	19308557	30795547	128343116	54	74400										
AMPH	0	genome.wustl.edu	37	chr7	38467842	38467842	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	attattcattgctgaatccaAgcttggctgccagatttgac	8	9	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	38467842	38467842	A	G	SNP	AMPH	ENST00000471913	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMPH	HGNC	ENSG00000078053	58	0	0	52	7	11.86	-	-	-	G	38467842	A	G	38467842	1	3	924	0	1	0	0	0	0	0	0	0	588	87	3	5		5	AMPH	7	38467842	RNA	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	7672295	38467842	120670821	55	74401										
AMPH	0	genome.wustl.edu	37	chr7	38468463	38468463	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctcaaaataattttcattggCgtttgtactttccttatacc	4	9	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	38468463	38468463	C	T	SNP	AMPH	ENST00000467580	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AMPH	HGNC	ENSG00000078053	38	0	0	30	4	11.43	-	-	-	T	38468463	C	T	38468463	1	4	924	0	1	0	0	0	0	0	0	0	588	783	27	1		1	AMPH	7	38468463	RNA	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	621	38468463	120670200	56	74402										
ADCY1	0	genome.wustl.edu	37	chr7	45703971	45703971	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	caacggggacgactgtgcacGtagcttcaggtcctgcccaa	12	13	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	45703971	45703971	G	A	SNP	ADCY1	ENST00000432715	human	ensembl	69_37n	1	putative	silent	c.1014	p.T338	0.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	43	0	0	23	4	14.29	-	-	-	A	45703971	G	A	45703971	2	1	924	1	0	0	0	0	0	0	0	1	292	1160	40	1		1	ADCY1	7	45703971	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	7235508	45703971	113434692	57	74403										
ADCY1	0	genome.wustl.edu	37	chr7	45725735	45725735	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tatttttccgggtgtcctccTtgccaaaaatgatcctgctc	7	12	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	45725735	45725735	T	G	SNP	ADCY1	ENST00000297323	human	ensembl	69_37n	1	known	missense	c.2248	p.L750V	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	75	0	0	43	11	20.37	-	-	-	G	45725735	T	G	45725735	3	3	924	1	0	0	0	0	1	0	0	0	292	1606	56	5	2298	5	ADCY1	7	45725735	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	21764	45725735	113412928	58	74404										
PKD1L1	0	genome.wustl.edu	37	chr7	47835657	47835657	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gaaaggtgaggaccttttccCacatataagcagtgacatct	9	9	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	47835657	47835657	C	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	missense	c.8285	p.W2762L	0.061	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	52	0	0	43	5	10.42	-	-	-	A	47835657	C	A	47835657	3	1	924	1	0	0	0	0	1	0	0	0	12038	595	21	4	276	4	PKD1L1	7	47835657	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	2109922	47835657	111303006	59	74405										
SEMA3D	0	genome.wustl.edu	37	chr7	84644491	84644491	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gtgtcgcatctgtgcaaggaGagctgaaccaatccatctcg	11	11	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	84644491	84644491	G	C	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	1.000	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	42	0	0	30	7	18.92	-	-	-	C	84644491	G	C	84644491	2	2	924	1	0	0	0	0	0	0	0	1	14115	929	33	2		2	SEMA3D	7	84644491	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	36808834	84644491	74494172	60	74406										
CYP51A1	0	genome.wustl.edu	37	chr7	91743114	91743114	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atagtggaccaaattgtcttAatttgaacataggcaaaatt	7	5	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	91743114	91743114	A	C	SNP	CYP51A1	ENST00000003100	human	ensembl	69_37n	-1	known	missense	c.1395	p.I465M	0.801	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630	25	0	0	21	7	25	-	-	-	C	91743114	A	C	91743114	3	2	924	1	0	0	0	0	1	0	0	0	4226	358	13	5	138	5	CYP51A1	7	91743114	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	7098623	91743114	67395549	61	74407										
MUC17	0	genome.wustl.edu	37	chr7	100680493	100680493	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cctccattaacaagtataccTgtcagcaccacaacagtggc	6	14	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	100680493	100680493	T	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.5796	p.P1932	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	63	0	0	45	14	23.73	-	-	-	A	100680493	T	A	100680493	2	1	924	1	0	0	0	0	0	0	0	1	10046	1567	55	5		5	MUC17	7	100680493	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	8937379	100680493	58458170	62	74408										
MUC17	0	genome.wustl.edu	37	chr7	100681460	100681460	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcacacctgtgaccacttctActgaagccacttcatctcct	5	16	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	100681460	100681460	A	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	missense	c.6763	p.T2255S	0.006	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	104	1	0.94	52	10	15.87	-	-	-	T	100681460	A	T	100681460	3	4	924	1	0	0	0	0	1	0	0	0	10046	391	14	5	6773	5	MUC17	7	100681460	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	967	100681460	58457203	63	74409										
ATXN7L1	0	genome.wustl.edu	37	chr7	105254755	105254755	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggcattcaaaacacagttctTtttgtgaggccctgacagtg	10	9	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	105254755	105254755	T	A	SNP	ATXN7L1	ENST00000419735	human	ensembl	69_37n	-1	known	nonsense	c.2026	p.K676*	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	39	0	0	32	4	11.11	-	-	-	A	105254755	T	A	105254755	4	1	924	1	0	0	0	0	0	1	0	0	1220	1850	64	5	574	5	ATXN7L1	7	105254755	Nonsense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	4573295	105254755	53883908	64	74410										
SLC13A1	0	genome.wustl.edu	37	chr7	122787318	122787318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	acaaacacgtaagtttacgtGtcacgtggcccttctttgtt	8	10	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	122787318	122787318	G	A	SNP	SLC13A1	ENST00000194130	human	ensembl	69_37n	-1	known	missense	c.707	p.T236I	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800	116	0	0	41	16	28.07	-	-	-	A	122787318	G	A	122787318	3	1	924	1	0	0	0	0	1	0	0	0	14480	1377	48	4	1116	4	SLC13A1	7	122787318	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	17532563	122787318	36351345	65	74411										
METTL2B	0	genome.wustl.edu	37	chr7	128095923	128095923	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaggggcggaggctgggcggCgttgctctgcgctctgcggc	20	11	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	128095923	128095923	C	T	SNP	METTL2B	ENST00000462662	human	ensembl	69_37n	1	putative	silent	c.30	p.G10	0.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	METTL2B	HGNC	ENSG00000165055	86	0	0	35	19	35.19	-	-	-	T	128095923	C	T	128095923	2	4	924	1	0	0	0	0	0	0	0	1	9571	783	27	1		1	METTL2B	7	128095923	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	5308605	128095923	31042740	66	74412										
NUB1	0	genome.wustl.edu	37	chr7	151049231	151049231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	caacacacatgcgtagaagaCcctgtggatcagcccccgct	9	15	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	7	151049231	151049231	C	T	SNP	NUB1	ENST00000470316	human	ensembl	69_37n	1	known	missense	c.397	p.P133S	0.000	NULL	NULL	-	no_errors	NUB1	HGNC	ENSG00000013374	78	0	0	45	6	11.76	-	-	-	T	151049231	C	T	151049231	3	4	924	1	0	0	0	0	1	0	0	0	10787	522	18	4		4	NUB1	7	151049231	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	22953308	151049231	8089432	67	74413										
ADRA1A	0	genome.wustl.edu	37	chr8	26722177	26722177	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcagcacagcacatccactgCcgcccagatgttgcagaaga	10	14	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	8	26722177	26722177	C	A	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	missense	c.310	p.A104S	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	39	0	0	6	13	68.42	-	-	-	A	26722177	C	A	26722177	3	1	924	1	0	0	0	0	1	0	0	0	334	739	26	4	1389	4	ADRA1A	8	26722177	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09		26722177	119641845	68	74414										
C8orf76	0	genome.wustl.edu	37	chr8	124232476	124232476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cagtcagggctacggagccaAcacacttcacctctgggtga	11	13	3	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	8	124232476	124232476	A	G	SNP	C8orf76	ENST00000276704	human	ensembl	69_37n	-1	known	missense	c.1010	p.V337A	0.922	NULL	NULL	-	no_errors	C8orf76	HGNC	ENSG00000189376	33	0	0	62	9	12.68	-	-	-	G	124232476	A	G	124232476	3	3	924	1	0	0	0	0	1	0	0	0	2462	43	2	5	136	5	C8orf76	8	124232476	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	97510299	124232476	22131546	69	74415										
LINGO2	0	genome.wustl.edu	37	chr9	27949115	27949115	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aatggtgtcattggagtcggTcatgtacataggggtcctgt	14	6	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	27949115	27949115	T	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.1555	p.T519S	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	74	0	0	19	9	32.14	-	-	-	A	27949115	T	A	27949115	3	1	924	1	0	0	0	0	1	0	0	0	8871	1667	58	5	269	5	LINGO2	9	27949115	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		27949115	113264316	70	74416										
ZNF169	0	genome.wustl.edu	37	chr9	97062923	97062923	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ttttgccagaaggcatcactCctccagcaccagagctcaca	7	15	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	97062923	97062923	C	G	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	1	known	silent	c.1083	p.L361	0.042	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	51	0	0	23	7	23.33	-	-	-	G	97062923	C	G	97062923	2	3	924	1	0	0	0	0	0	0	0	1	17838	842	30	2		2	ZNF169	9	97062923	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	69113808	97062923	44150508	71	74417										
TMEM38B	0	genome.wustl.edu	37	chr9	108536283	108536283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcaaagtcaccttccaatggCgttgggtcattggcctcaaa	10	11	3	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	108536283	108536283	C	T	SNP	TMEM38B	ENST00000374692	human	ensembl	69_37n	1	known	silent	c.798	p.G266	0.020	NULL	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209	50	0	0	15	20	57.14	-	-	-	T	108536283	C	T	108536283	2	4	924	1	0	0	0	0	0	0	0	1	16255	755	27	1		1	TMEM38B	9	108536283	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	11473360	108536283	32677148	72	74418										
NR6A1	0	genome.wustl.edu	37	chr9	127316675	127316675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggcacctgttcctctgcttcCgagacatgacacagttcttg	9	13	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	127316675	127316675	C	T	SNP	NR6A1	ENST00000487099	human	ensembl	69_37n	-1	known	missense	c.317	p.R106Q	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	37	0	0	10	10	50	-	-	-	T	127316675	C	T	127316675	3	4	924	1	0	0	0	0	1	0	0	0	10710	652	23	1	1157	1	NR6A1	9	127316675	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	18780392	127316675	13896756	73	74419										
C9orf171	0	genome.wustl.edu	37	chr9	135374986	135374986	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgacatttgggatccgggcaCggtaaggtggctggcagcca	16	9	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	135374986	135374986	C	T	SNP	C9orf171	ENST00000393215	human	ensembl	69_37n	1	putative	nonsense	c.523	p.R175*	1.000	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523	37	0	0	9	11	55	-	-	-	T	135374986	C	T	135374986	4	4	924	1	0	0	0	0	0	1	0	0	2495	550	19	1	645	1	C9orf171	9	135374986	Nonsense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	8058311	135374986	5838445	74	74420										
QSOX2	0	genome.wustl.edu	37	chr9	139100961	139100961	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tccccctggtctgcggaataCgtgtctaagaggttgtcgcg	13	11	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	139100961	139100961	C	A	SNP	QSOX2	ENST00000358701	human	ensembl	69_37n	-1	known	silent	c.1710	p.T570	0.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661	67	0	0	15	28	65.12	-	-	-	A	139100961	C	A	139100961	2	1	924	1	0	0	0	0	0	0	0	1	12967	523	19	3		3	QSOX2	9	139100961	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	3725975	139100961	2112470	75	74421										
PNPLA7	0	genome.wustl.edu	37	chr9	140417223	140417223	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tccggatatttctcaaaaacTccatgaaaagccgcagctgg	8	11	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	9	140417223	140417223	T	A	SNP	PNPLA7	ENST00000406427	human	ensembl	69_37n	-1	known	silent	c.834	p.G278	0.992	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	14	0	0	7	10	58.82	-	-	-	A	140417223	T	A	140417223	2	1	924	1	0	0	0	0	0	0	0	1	12244	1538	54	5		5	PNPLA7	9	140417223	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	1316262	140417223	796208	76	74422										
ARHGAP21	0	genome.wustl.edu	37	chr10	24874322	24874322	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctctcgctgtcggtttccacAggccgcccttcactgatgag	10	15	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	10	24874322	24874322	A	C	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	silent	c.4896	p.P1632	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	118	0	0	115	34	22.67	-	-	-	C	24874322	A	C	24874322	2	2	924	1	0	0	0	0	0	0	0	1	873	175	7	5		5	ARHGAP21	10	24874322	Silent	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09		24874322	110660425	77	74423										
THNSL1	0	genome.wustl.edu	37	chr10	25314083	25314083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tattttggatccacacactgCtgttgcaaaagtggttgcag	10	8	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	10	25314083	25314083	C	T	SNP	THNSL1	ENST00000376356	human	ensembl	69_37n	1	known	missense	c.1931	p.A644V	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_Shikimate_kinase,pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,prints_Shikimate_kinase,tigrfam_Thr_synthase	-	no_errors	THNSL1	HGNC	ENSG00000185875	46	0	0	30	24	44.44	-	-	-	T	25314083	C	T	25314083	3	4	924	1	0	0	0	0	1	0	0	0	15957	797	28	4	1933	4	THNSL1	10	25314083	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	439761	25314083	110220664	78	74424										
LYZL1	0	genome.wustl.edu	37	chr10	29578111	29578111	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cagtgtttcttccgcagactCaactgagaagtcagcctctg	9	12	4	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	10	29578111	29578111	C	T	SNP	LYZL1	ENST00000375500	human	ensembl	69_37n	1	known	missense	c.65	p.S22L	0.001	NULL	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL1	HGNC	ENSG00000120563	56	0	0	40	5	11.11	-	-	-	T	29578111	C	T	29578111	3	4	924	1	0	0	0	0	1	0	0	0	9198	838	29	2	67	2	LYZL1	10	29578111	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	4264028	29578111	105956636	79	74425										
ZFYVE27	0	genome.wustl.edu	37	chr10	99509969	99509969	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctcgctcagagttaggagggTgactctttcctgtagtgaag	13	8	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	10	99509969	99509969	T	C	SNP	ZFYVE27	ENST00000481956	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZFYVE27	HGNC	ENSG00000155256	47	0	0	32	4	11.11	-	-	-	C	99509969	T	C	99509969	1	2	924	0	1	0	0	0	0	0	0	0	17765	1711	59	5		5	ZFYVE27	10	99509969	RNA	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	69931858	99509969	36024778	80	74426										
PSD	0	genome.wustl.edu	37	chr10	104163668	104163668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ccccggcccttcttgcccagCtgggcggcccggtgctcccg	13	20	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	10	104163668	104163668	C	A	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	missense	c.2775	p.Q925H	0.000	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	83	0	0	45	8	15.09	-	-	-	A	104163668	C	A	104163668	3	1	924	1	0	0	0	0	1	0	0	0	12726	796	28	4	307	4	PSD	10	104163668	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	4653699	104163668	31371079	81	74427										
DCHS1	0	genome.wustl.edu	37	chr11	6652952	6652952	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	acagtgcctgtggtgctgcgGggtgggctccctccatcctg	15	13	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	6652952	6652952	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	silent	c.3570	p.P1190	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	28	0	0	7	15	68.18	-	-	-	C	6652952	G	C	6652952	2	2	924	1	0	0	0	0	0	0	0	1	4318	1219	43	4		4	DCHS1	11	6652952	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		6652952	128353564	82	74428										
SPON1	0	genome.wustl.edu	37	chr11	14280846	14280846	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	acggctccacctgcaccatgTccgagtggatcacctggtcg	11	15	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	14280846	14280846	T	A	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	50	0	0	23	9	28.12	-	-	-	A	14280846	T	A	14280846	1	1	924	0	1	0	0	0	0	0	0	0	15173	1667	58	5		5	SPON1	11	14280846	RNA	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	7627894	14280846	120725670	83	74429										
ACCS	0	genome.wustl.edu	37	chr11	44102768	44102768	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tccgctttggcacgctgtacAcagaaaaccaggatgtggcc	11	12	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	44102768	44102768	A	G	SNP	ACCS	ENST00000263776	human	ensembl	69_37n	1	known	missense	c.1009	p.T337A	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCS	HGNC	ENSG00000110455	43	0	0	10	9	47.37	-	-	-	G	44102768	A	G	44102768	3	3	924	1	0	0	0	0	1	0	0	0	133	159	6	5	1051	5	ACCS	11	44102768	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	29821922	44102768	90903748	84	74430										
PPFIA1	0	genome.wustl.edu	37	chr11	70229211	70229211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atcttgttaatacttgttatAtggaccctaagatattttat	5	5	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	70229211	70229211	A	G	SNP	PPFIA1	ENST00000528853	human	ensembl	69_37n	1	putative	missense	c.221	p.Y74C	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPFIA1	HGNC	ENSG00000131626	26	0	0	33	4	10.81	-	-	-	G	70229211	A	G	70229211	3	3	924	1	0	0	0	0	1	0	0	0	12382	464	16	5		5	PPFIA1	11	70229211	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	26126443	70229211	64777305	85	74431										
NADSYN1	0	genome.wustl.edu	37	chr11	71189512	71189512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gagatttcatctcgaaacctGgcggtgagtgctccagtaga	12	9	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	71189512	71189512	G	A	SNP	NADSYN1	ENST00000527852	human	ensembl	69_37n	1	known	nonsense	c.164	p.W55*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	33	0	0	20	7	25.93	-	-	-	A	71189512	G	A	71189512	4	1	924	1	0	0	0	0	0	1	0	0	10210	1335	47	4	908	4	NADSYN1	11	71189512	Nonsense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	960301	71189512	63817004	86	74432										
P2RY2	0	genome.wustl.edu	37	chr11	72946005	72946005	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ttccacgtcacccgcaccctCtactactccttccgctcgct	4	21	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	72946005	72946005	C	G	SNP	P2RY2	ENST00000311131	human	ensembl	69_37n	1	known	silent	c.801	p.L267	1.000	pfam_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_P2U_purnocptor,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2Y4_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	P2RY2	HGNC	ENSG00000175591	51	0	0	24	13	35.14	-	-	-	G	72946005	C	G	72946005	2	3	924	1	0	0	0	0	0	0	0	1	11425	900	32	2		2	P2RY2	11	72946005	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	1756493	72946005	62060511	87	74433										
SERPINH1	0	genome.wustl.edu	37	chr11	75280169	75280169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agatgcagaagaaggctgttGccatctccttgcccaagggt	12	10	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	75280169	75280169	G	A	SNP	SERPINH1	ENST00000358171	human	ensembl	69_37n	1	known	missense	c.907	p.A303T	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257	46	0	0	29	4	12.12	-	-	-	A	75280169	G	A	75280169	3	1	924	1	0	0	0	0	1	0	0	0	14205	1319	46	4	917	4	SERPINH1	11	75280169	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	2334164	75280169	59726347	88	74434										
ABCG4	0	genome.wustl.edu	37	chr11	119027390	119027390	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cacaacccggctgacttcagTgagtgggggtctgttggtag	15	9	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	11	119027390	119027390	T	A	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	1	known	splice_site	c.925+2	e7+2	1.000	-	-	-	no_errors	ABCG4	HGNC	ENSG00000172350	27	0	0	21	9	30	-	-	-	A	119027390	T	A	119027390	5	1	924	1	0	0	0	0	0	0	1	0	70	1710	59	5	953	5	ABCG4	11	119027390	Splice_Site	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	43747221	119027390	15979126	89	74435										
DUSP16	0	genome.wustl.edu	37	chr12	12673999	12673999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cagagccaccaacctctcagTaacaatttgagttccaatca	5	13	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	12673999	12673999	T	A	SNP	DUSP16	ENST00000228862	human	ensembl	69_37n	-1	known	missense	c.34	p.T12S	1.000	superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266	82	0	0	111	37	25	-	-	-	A	12673999	T	A	12673999	3	1	924	1	0	0	0	0	1	0	0	0	4851	1638	57	5	1987	5	DUSP16	12	12673999	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		12673999	121177896	90	74436										
C12orf69	0	genome.wustl.edu	37	chr12	14959605	14959606	+	Frame_Shift_Del	DEL	TT	TT	-													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctctgggtaaaggaagtcacTttgggccatatttccaatat							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	14959605	14959606	TT	-	DEL	C12orf69	ENST00000316048	human	ensembl	69_37n	-1	known	frame_shift_del	c.10_9	p.S4fs	0.998:0.961	NULL	NULL	-	no_errors	C12orf69	HGNC	ENSG00000179256	21	0	0	39	8	17.02	-	-	-	-	14959606	TT	-	14959605	7	5	924	1	0	1	0	1	0	0	0	0	1723	1609	56	0	671	0	C12orf69	12	14959605	Frame_Shift_Del	DEL	TT	TCGA-GI-A2C9-01A-11D-A21Q-09	2285606	14959605	118892290	91	74437										
LRP1	0	genome.wustl.edu	37	chr12	57590002	57590002	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctgccacatcaatgagtgtcTcagccgcaagctcagtggct	10	13	3	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	57590002	57590002	T	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.8834	p.L2945H	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	96	0	0	63	24	27.59	-	-	-	A	57590002	T	A	57590002	3	1	924	1	0	0	0	0	1	0	0	0	9017	1551	54	5	9052	5	LRP1	12	57590002	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	42630397	57590002	76261893	92	74438										
LGR5	0	genome.wustl.edu	37	chr12	71965338	71965338	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agatttacccagtttttcagTctgccaaaagcttcagaaaa	6	9	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	71965338	71965338	T	C	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	missense	c.1115	p.V372A	0.977	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	37	0	0	30	14	31.11	-	-	-	C	71965338	T	C	71965338	3	2	924	1	0	0	0	0	1	0	0	0	8812	1667	58	5	1161	5	LGR5	12	71965338	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	14375336	71965338	61886557	93	74439										
GAS2L3	0	genome.wustl.edu	37	chr12	100994202	100994202	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctctaagtcctcggagtcctCtgactcccagacacggacca	8	16	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	100994202	100994202	C	T	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	1	known	silent	c.61	p.L21	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	35	0	0	13	10	43.48	-	-	-	T	100994202	C	T	100994202	2	4	924	1	0	0	0	0	0	0	0	1	6298	912	32	2		2	GAS2L3	12	100994202	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	29028864	100994202	32857693	94	74440										
ANO4	0	genome.wustl.edu	37	chr12	101133704	101133704	+	Frame_Shift_Del	DEL	C	C	-													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atacgtacaaggcagaccaaCcctcccatcagatctgcctc							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	101133704	101133704	C	-	DEL	ANO4	ENST00000538618	human	ensembl	69_37n	1	known	frame_shift_del	c.179	p.L61fs	0.959	NULL	NULL	-	no_errors	ANO4	HGNC	ENSG00000151572	82	0	0	31	4	11.43	-	-	-	-	101133704	C	-	101133704	7	5	924	1	0	1	0	1	0	0	0	0	698	522	18	0		0	ANO4	12	101133704	Frame_Shift_Del	DEL	C	TCGA-GI-A2C9-01A-11D-A21Q-09	139502	101133704	32718191	95	74441	523	2								
ANO4	0	genome.wustl.edu	37	chr12	101133706	101133706	+	Missense_Mutation	SNP	C	C	A													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	acgtacaaggcagaccaaccCtcccatcagatctgcctctc							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	101133706	101133706	C	A	SNP	ANO4	ENST00000538618	human	ensembl	69_37n	1	known	missense	c.181	p.L61I	0.997	NULL	NULL	-	no_errors	ANO4	HGNC	ENSG00000151572	91	0	0	33	4	10.81	-	-	-	A	101133706	C	A	101133706	3	1	924	1	0	0	0	0	1	0	0	0	698	696	24	4		4	ANO4	12	101133706	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	2	101133706	32718189	96	74442	523	2								
TCP11L2	0	genome.wustl.edu	37	chr12	106734742	106734742	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ataggtcaattttcaagcatTgaagaggaggacaatcctat	9	6	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	106734742	106734742	T	A	SNP	TCP11L2	ENST00000299045	human	ensembl	69_37n	1	known	silent	c.1281	p.I427	0.978	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	39	0	0	29	20	40.82	-	-	-	A	106734742	T	A	106734742	2	1	924	1	0	0	0	0	0	0	0	1	15810	1800	63	5		5	TCP11L2	12	106734742	Silent	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	5601036	106734742	27117153	97	74443										
RNFT2	0	genome.wustl.edu	37	chr12	117289613	117289613	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaggaaggaaagaaagaaagGtcagctttggcccagatgtg	14	5	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	117289613	117289613	G	C	SNP	RNFT2	ENST00000319176	human	ensembl	69_37n	1	putative	missense	c.830	p.G277A	0.000	NULL	NULL	-	no_errors	RNFT2	HGNC	ENSG00000135119	88	0	0	46	8	14.81	-	-	-	C	117289613	G	C	117289613	3	2	924	1	0	0	0	0	1	0	0	0	13588	1276	44	4		4	RNFT2	12	117289613	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	10554871	117289613	16562282	98	74444										
WDR66	0	genome.wustl.edu	37	chr12	122437845	122437845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cttcctgagactgctcgttaCtaaaggtaagcacatacatc	7	11	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	122437845	122437845	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.3230	p.T1077I	0.124	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	29	0	0	15	8	34.78	-	-	-	T	122437845	C	T	122437845	3	4	924	1	0	0	0	0	1	0	0	0	17414	565	20	4	3363	4	WDR66	12	122437845	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	5148232	122437845	11414050	99	74445										
ABCB9	0	genome.wustl.edu	37	chr12	123419951	123419951	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cgtgatggagcgggcgaacaGcacgggctcctggctcacca	15	13	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	123419951	123419951	G	A	SNP	ABCB9	ENST00000442028	human	ensembl	69_37n	-1	known	silent	c.1771	p.L591	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB9	HGNC	ENSG00000150967	40	0	0	21	4	16	-	-	-	A	123419951	G	A	123419951	2	1	924	1	0	0	0	0	0	0	0	1	48	962	34	4		4	ABCB9	12	123419951	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	982106	123419951	10431944	100	74446										
GPR133	0	genome.wustl.edu	37	chr12	131590371	131590371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ttcgccgtgctggtggcccaGgtcctgctgctcattagttt	12	12	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	131590371	131590371	G	T	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	missense	c.1848	p.Q616H	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	61	0	0	7	17	70.83	-	-	-	T	131590371	G	T	131590371	3	4	924	1	0	0	0	0	1	0	0	0	6693	991	35	4	1914	4	GPR133	12	131590371	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	8170420	131590371	2261524	101	74447										
POLE	0	genome.wustl.edu	37	chr12	133240731	133240731	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tctgtgtccagctctaagggCctccttcagagaaagagagg	12	10	3	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	12	133240731	133240731	C	T	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.2598	p.R866	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	38	0	0	6	15	71.43	-	-	-	T	133240731	C	T	133240731	2	4	924	1	0	0	0	0	0	0	0	1	12270	738	26	4		4	POLE	12	133240731	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	1650360	133240731	611164	102	74448										
OR11H4	0	genome.wustl.edu	37	chr14	20711290	20711290	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcttcctccagttctatttcTtcttttcactgggaacaact	5	12	4	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	14	20711290	20711290	T	C	SNP	OR11H4	ENST00000315409	human	ensembl	69_37n	1	known	missense	c.340	p.F114L	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR11H4	HGNC	ENSG00000176198	63	0	0	56	7	11.11	-	-	-	C	20711290	T	C	20711290	3	2	924	1	0	0	0	0	1	0	0	0	11001	1609	56	5	342	5	OR11H4	14	20711290	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		20711290	86638250	103	74449										
DAAM1	0	genome.wustl.edu	37	chr14	59835650	59835650	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctagaacgtttcattacactGccttgcaatccaaacagtgg	7	11	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	14	59835650	59835650	G	A	SNP	DAAM1	ENST00000553966	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592	52	0	0	40	9	18.37	-	-	-	A	59835650	G	A	59835650	1	1	924	0	1	0	0	0	0	0	0	0	4247	1334	46	4		4	DAAM1	14	59835650	RNA	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	39124360	59835650	47513890	104	74450										
RDH11	0	genome.wustl.edu	37	chr14	68162412	68162412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agcaacagcgggaacatgagCtcaaccatctctgccggctg	11	13	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	14	68162412	68162412	C	G	SNP	RDH11	ENST00000381346	human	ensembl	69_37n	-1	known	missense	c.9	p.E3D	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH11	HGNC	ENSG00000072042	26	0	0	13	5	27.78	-	-	-	G	68162412	C	G	68162412	3	3	924	1	0	0	0	0	1	0	0	0	13273	796	28	4	975	4	RDH11	14	68162412	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	8326762	68162412	39187128	105	74451										
HERC2	0	genome.wustl.edu	37	chr15	28386674	28386674	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tcacagggagtgggaactttGacttttgcgccttcaatgcc	11	10	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	15	28386674	28386674	G	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.11919	p.V3973	0.101	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Beta-propeller_rpt_TECPR,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	77	0	0	22	13	37.14	-	-	-	T	28386674	G	T	28386674	2	4	924	1	0	0	0	0	0	0	0	1	7109	1277	45	2		2	HERC2	15	28386674	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		28386674	74144718	106	74452										
SPRED1	0	genome.wustl.edu	37	chr15	38632020	38632020	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgttaccagtgagccttataGaagctcaaatataagacctt	7	8	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	15	38632020	38632020	G	C	SNP	SPRED1	ENST00000299084	human	ensembl	69_37n	1	known	missense	c.506	p.R169T	1.000	NULL	pfam_Sprouty,pfam_EVH1,smart_EVH1,pfscan_EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	55	0	0	18	7	28	-	-	-	C	38632020	G	C	38632020	3	2	924	1	0	0	0	0	1	0	0	0	15183	942	33	2	524	2	SPRED1	15	38632020	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	10245346	38632020	63899372	107	74453										
VPS39	0	genome.wustl.edu	37	chr15	42459590	42459590	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cccgagcgctcaggtaactcAcatggagatagcacttgagc	11	12	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	15	42459590	42459590	A	G	SNP	VPS39	ENST00000348544	human	ensembl	69_37n	-1	known	splice_site	c.1410+2	e14+2	1.000	-	-	-	no_errors	VPS39	HGNC	ENSG00000166887	55	0	0	11	11	50	-	-	-	G	42459590	A	G	42459590	5	3	924	1	0	0	0	0	0	0	1	0	17306	173	6	5	1300	5	VPS39	15	42459590	Splice_Site	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	3827570	42459590	60071802	108	74454										
SLC28A2	0	genome.wustl.edu	37	chr15	45564673	45564673	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgaggaaggtagaattgtccTtgagtacaggggcaacaaag	14	5	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	15	45564673	45564673	T	C	SNP	SLC28A2	ENST00000560767	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	SLC28A2	HGNC	ENSG00000137860	17	0	0	16	7	30.43	-	-	-	C	45564673	T	C	45564673	1	2	924	0	1	0	0	0	0	0	0	0	14621	1624	56	5		5	SLC28A2	15	45564673	RNA	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	3105083	45564673	56966719	109	74455										
ZNF597	0	genome.wustl.edu	37	chr16	3486435	3486435	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atatttactttacgtggtgtTttttatgtgagttcgcttat	8	4	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	16	3486435	3486435	T	A	SNP	ZNF597	ENST00000301744	human	ensembl	69_37n	-1	known	missense	c.1264	p.N422Y	0.010	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981	62	0	0	56	9	13.85	-	-	-	A	3486435	T	A	3486435	3	1	924	1	0	0	0	0	1	0	0	0	18123	1841	64	5	14	5	ZNF597	16	3486435	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		3486435	86868318	110	74456										
GSPT1	0	genome.wustl.edu	37	chr16	11979099	11979099	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ctgatctattgaagttcggcAaattatccagatatggaata	8	6	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	16	11979099	11979099	A	C	SNP	GSPT1	ENST00000434724	human	ensembl	69_37n	-1	known	missense	c.1286	p.L429W	1.000	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT1	HGNC	ENSG00000103342	36	0	0	37	8	17.78	-	-	-	C	11979099	A	C	11979099	3	2	924	1	0	0	0	0	1	0	0	0	6877	131	5	5	651	5	GSPT1	16	11979099	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	8492664	11979099	78375654	111	74457										
KIAA0430	0	genome.wustl.edu	37	chr16	15696471	15696472	+	Frame_Shift_Ins	INS	-	-	G													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agacaaagaagaagaaaggaINSggaggaggaaggaaagaagg							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	16	15696471	15696472	-	G	INS	KIAA0430	ENST00000344181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3348_3347	p.P1117fs	0.008:0.011	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	14	0	0	13	5	27.78	-	-	-	G	15696472	-	G	15696471	7	5	924	1	0	1	1	0	0	0	0	0	8229	319	11	0		0	KIAA0430	16	15696471	Frame_Shift_Ins	INS	-	TCGA-GI-A2C9-01A-11D-A21Q-09	3717372	15696471	74658282	112	74458										
TNRC6A	0	genome.wustl.edu	37	chr16	24801526	24801526	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggaggctcttatggtactacAtggggtgcctatggttctaa	13	7	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	16	24801526	24801526	A	C	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	silent	c.1563	p.T521	0.272	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	41	0	0	12	13	52	-	-	-	C	24801526	A	C	24801526	2	2	924	1	0	0	0	0	0	0	0	1	16435	204	8	5		5	TNRC6A	16	24801526	Silent	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	9105055	24801526	65553227	113	74459										
GALNS	0	genome.wustl.edu	37	chr16	88904078	88904080	+	In_Frame_Del	DEL	TTG	TTG	-													0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cagggatgttgggcctggccTtgttgtcataaggtccaaag							TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	16	88904078	88904080	TTG	-	DEL	GALNS	ENST00000268695	human	ensembl	69_37n	-1	known	in_frame_del	c.518_516	p.N172in_frame_del	0.581:0.999:1.000	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	GALNS	HGNC	ENSG00000141012	83	0	0	41	5	10.64	-	-	-	-	88904080	TTG	-	88904078	7	5	924	1	0	1	0	1	0	0	0	0	6256	1609	56	0	1090	0	GALNS	16	88904078	In_Frame_Del	DEL	TTG	TCGA-GI-A2C9-01A-11D-A21Q-09	64102552	88904078	1450675	114	74460										
ZZEF1	0	genome.wustl.edu	37	chr17	4046260	4046260	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cgcctcgacctgtcaacctcCgacagcagctggcgggcggg	14	16	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	4046260	4046260	C	T	SNP	ZZEF1	ENST00000574474	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.826	-	-	-	no_errors	ZZEF1	HGNC	ENSG00000074755	10	0	0	1	5	83.33	-	-	-	T	4046260	C	T	4046260	1	4	924	0	1	0	0	0	0	0	0	0	18346	667	23	1		1	ZZEF1	17	4046260	RNA	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09		4046260	77148950	115	74461										
SHBG	0	genome.wustl.edu	37	chr17	7534956	7534956	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ccgggattcctggctggacaAacaggccgagatctcagcat	12	12	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	7534956	7534956	A	T	SNP	SHBG	ENST00000380450	human	ensembl	69_37n	1	known	missense	c.605	p.K202I	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	SHBG	HGNC	ENSG00000129214	41	0	0	28	7	19.44	-	-	-	T	7534956	A	T	7534956	3	4	924	1	0	0	0	0	1	0	0	0	14358	14	1	5	623	5	SHBG	17	7534956	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	3488696	7534956	73660254	116	74462										
TP53	0	genome.wustl.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	7578403	7578403	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	27	0	0	7	14	66.67	-	-	-	T	7578403	C	T	7578403	3	4	924	1	0	0	0	0	1	0	0	0	16477	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	43447	7578403	73616807	117	74463										
ARHGEF15	0	genome.wustl.edu	37	chr17	8221893	8221893	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gctccccttacctagatcatCgagcgttgcagcgctgaggt	11	13	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	8221893	8221893	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	69_37n	1	known	silent	c.1785	p.I595	0.933	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	28	0	0	7	9	56.25	-	-	-	T	8221893	C	T	8221893	2	4	924	1	0	0	0	0	0	0	0	1	900	874	31	1		1	ARHGEF15	17	8221893	Silent	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	643490	8221893	72973317	118	74464										
PIK3R5	0	genome.wustl.edu	37	chr17	8794119	8794119	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aggtggcctggaaggcgtgcAggagcagggtggtgtaggca	21	6	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	8794119	8794119	A	G	SNP	PIK3R5	ENST00000447110	human	ensembl	69_37n	-1	known	missense	c.593	p.L198P	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	59	0	0	22	14	38.89	-	-	-	G	8794119	A	G	8794119	3	3	924	1	0	0	0	0	1	0	0	0	11996	188	7	5	2101	5	PIK3R5	17	8794119	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	572226	8794119	72401091	119	74465										
MYH2	0	genome.wustl.edu	37	chr17	10426683	10426683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcagacctttgacagcctcaGcattacgcttttgctcactc	7	14	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	10426683	10426683	G	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	missense	c.5519	p.A1840D	0.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	56	0	0	15	27	64.29	-	-	-	T	10426683	G	T	10426683	3	4	924	1	0	0	0	0	1	0	0	0	10107	971	34	4	318	4	MYH2	17	10426683	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	1632564	10426683	70768527	120	74466										
GSDMA	0	genome.wustl.edu	37	chr17	38132225	38132225	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggtgaaatccatggagaaaaAgatcctacccgtgcagctaa	10	9	0	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	38132225	38132225	A	C	SNP	GSDMA	ENST00000301659	human	ensembl	69_37n	1	known	missense	c.1070	p.K357T	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914	43	0	0	14	4	22.22	-	-	-	C	38132225	A	C	38132225	3	2	924	1	0	0	0	0	1	0	0	0	6867	72	3	5	1108	5	GSDMA	17	38132225	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	27705542	38132225	43062985	121	74467										
DNAJC7	0	genome.wustl.edu	37	chr17	40148414	40148414	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ccatggcattccccagagagAggtggcacttgccctctcgt	11	14	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	40148414	40148414	A	G	SNP	DNAJC7	ENST00000457167	human	ensembl	69_37n	-1	known	missense	c.320	p.L107P	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DnaJ_N,superfamily_DnaJ_N,smart_TPR_repeat,smart_DnaJ_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC7	HGNC	ENSG00000168259	51	0	0	16	19	54.29	-	-	-	G	40148414	A	G	40148414	3	3	924	1	0	0	0	0	1	0	0	0	4689	304	11	5	1208	5	DNAJC7	17	40148414	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	2016189	40148414	41046796	122	74468										
ICAM2	0	genome.wustl.edu	37	chr17	62083991	62083991	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	accccaggaaactggcttacCtggacagcagatcagggtga	12	11	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	62083991	62083991	C	A	SNP	ICAM2	ENST00000412356	human	ensembl	69_37n	-1	known	nonsense	c.61	p.G21*	0.999	pfam_ICAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM2	HGNC	ENSG00000108622	32	0	0	6	14	70	-	-	-	A	62083991	C	A	62083991	4	1	924	1	0	0	0	0	0	1	0	0	7534	695	24	4	782	4	ICAM2	17	62083991	Nonsense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	21935577	62083991	19111219	123	74469										
LGALS3BP	0	genome.wustl.edu	37	chr17	76972047	76972047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aaggggacagcaggccctacCttgcccgaaggcagctctgc	13	14	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	76972047	76972047	C	G	SNP	LGALS3BP	ENST00000262776	human	ensembl	69_37n	-1	known	missense	c.244	p.G82R	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,prints_Srcr_rcpt,pfscan_BTB/POZ-like,pfscan_Srcr_rcpt	-	no_errors	LGALS3BP	HGNC	ENSG00000108679	37	0	0	39	10	20.41	-	-	-	G	76972047	C	G	76972047	3	3	924	1	0	0	0	0	1	0	0	0	8798	695	24	4	1529	4	LGALS3BP	17	76972047	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	14888056	76972047	4223163	124	74470										
CD7	0	genome.wustl.edu	37	chr17	80274097	80274097	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cctcgccagcacacacgccaCccccaggcccagcccgagga	9	22	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	17	80274097	80274097	C	A	SNP	CD7	ENST00000312648	human	ensembl	69_37n	-1	known	missense	c.586	p.V196L	0.124	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD7	HGNC	ENSG00000173762	41	0	0	41	11	21.15	-	-	-	A	80274097	C	A	80274097	3	1	924	1	0	0	0	0	1	0	0	0	3061	507	18	4	144	4	CD7	17	80274097	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	3302050	80274097	921113	125	74471										
TJP3	0	genome.wustl.edu	37	chr19	3735625	3735625	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gaaccatctcggaaccagatGagcaacggtcaggtgggtgg	15	9	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	19	3735625	3735625	G	A	SNP	TJP3	ENST00000262968	human	ensembl	69_37n	1	known	missense	c.1147	p.E383K	0.901	NULL	pfam_PDZ,pfam_SH3_2,pfam_Guanylate_kin,superfamily_PDZ,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289	51	0	0	22	13	37.14	-	-	-	A	3735625	G	A	3735625	3	1	924	1	0	0	0	0	1	0	0	0	16026	1291	45	2	1177	2	TJP3	19	3735625	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		3735625	55393358	126	74472										
AKAP8L	0	genome.wustl.edu	37	chr19	15512205	15512205	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	catagcctgaggccattggcCggccgctccgggcatcccgg	14	16	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	19	15512205	15512205	C	G	SNP	AKAP8L	ENST00000397410	human	ensembl	69_37n	-1	known	missense	c.572	p.R191P	0.992	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243	55	0	0	43	22	33.33	-	-	-	G	15512205	C	G	15512205	3	3	924	1	0	0	0	0	1	0	0	0	458	652	23	3	1408	3	AKAP8L	19	15512205	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	11776580	15512205	43616778	127	74473										
SLC5A5	0	genome.wustl.edu	37	chr19	17983256	17983256	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ggctcggggcgggcagcgcaGcgctgaggacttcttcaccg	17	13	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	19	17983256	17983256	G	C	SNP	SLC5A5	ENST00000222248	human	ensembl	69_37n	1	known	missense	c.128	p.S43T	0.964	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	101	0	0	77	9	10.47	-	-	-	C	17983256	G	C	17983256	3	2	924	1	0	0	0	0	1	0	0	0	14757	971	34	4	130	4	SLC5A5	19	17983256	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	2471051	17983256	41145727	128	74474										
ZNF93	0	genome.wustl.edu	37	chr19	20044531	20044531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cattcatactggaaagaaacCctacaagtgtgaagaatgtg	9	7	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	19	20044531	20044531	C	T	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	1	known	missense	c.767	p.P256L	0.945	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	52	0	0	16	15	48.39	-	-	-	T	20044531	C	T	20044531	3	4	924	1	0	0	0	0	1	0	0	0	18295	623	22	4	781	4	ZNF93	19	20044531	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	2061275	20044531	39084452	129	74475										
BRSK1	0	genome.wustl.edu	37	chr19	55820028	55820028	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tcccagccgtcggttcaagcGagtggtggagaccatccagg	14	12	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	19	55820028	55820028	G	C	SNP	BRSK1	ENST00000590333	human	ensembl	69_37n	1	known	missense	c.2159	p.R720P	0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469	82	0	0	39	6	13.33	-	-	-	C	55820028	G	C	55820028	3	2	924	1	0	0	0	0	1	0	0	0	1531	1058	37	3	2181	3	BRSK1	19	55820028	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	35775497	55820028	3308955	130	74476										
LPIN3	0	genome.wustl.edu	37	chr20	39977740	39977740	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gccccttagcagtgtccagtTggaagagaagtcttcactgc	11	11	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	20	39977740	39977740	T	A	SNP	LPIN3	ENST00000373257	human	ensembl	69_37n	1	known	nonsense	c.566	p.L189*	0.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793	59	0	0	32	9	21.95	-	-	-	A	39977740	T	A	39977740	4	1	924	1	0	0	0	0	0	1	0	0	8986	1821	63	5	580	5	LPIN3	20	39977740	Nonsense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		39977740	23047780	131	74477										
CXADR	0	genome.wustl.edu	37	chr21	18933747	18933747	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	atcatcttttgctgtcgtaaAaagcgcagagaagaaaaata	8	6	2	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	21	18933747	18933747	A	G	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	silent	c.786	p.K262	0.993	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CXADR	HGNC	ENSG00000154639	36	0	0	21	15	41.67	-	-	-	G	18933747	A	G	18933747	2	3	924	1	0	0	0	0	0	0	0	1	4107	11	1	5		5	CXADR	21	18933747	Silent	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09		18933747	29196148	132	74478										
COL6A2	0	genome.wustl.edu	37	chr21	47545705	47545705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	cgtgcggcttgcagggacgcGtgtgggcgtggtgcagtaca	19	9	0	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	21	47545705	47545705	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	missense	c.1976	p.R659H	0.995	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	104	0	0	111	19	14.62	-	-	-	A	47545705	G	A	47545705	3	1	924	1	0	0	0	0	1	0	0	0	3730	1145	40	1	2074	1	COL6A2	21	47545705	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	28611958	47545705	584190	133	74479										
TOP3B	0	genome.wustl.edu	37	chr22	22313983	22313983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aatggagtcgacaaagtagtGgaacttcctcttgaacacgt	10	8	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	22	22313983	22313983	G	T	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	missense	c.1780	p.H594N	1.000	superfamily_Topo_IA_core_domain	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	42	0	0	36	4	10	-	-	-	T	22313983	G	T	22313983	3	4	924	1	0	0	0	0	1	0	0	0	16464	1348	47	4	824	4	TOP3B	22	22313983	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09		22313983	28990583	134	74480										
PIWIL3	0	genome.wustl.edu	37	chr22	25131764	25131764	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcttctctgtgactgctcctGctatagagtatgagccaact	9	11	1	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	22	25131764	25131764	G	A	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	silent	c.1545	p.S515	0.000	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	70	0	0	47	47	50	-	-	-	A	25131764	G	A	25131764	2	1	924	1	0	0	0	0	0	0	0	1	12033	1310	46	4		4	PIWIL3	22	25131764	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	2817781	25131764	26172802	135	74481										
TCF20	0	genome.wustl.edu	37	chr22	42609249	42609249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgctcgtaaaaccagggcccGctgcagagtggccactctgg	13	13	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	22	42609249	42609249	G	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.2063	p.A688G	0.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	50	0	0	53	11	17.19	-	-	-	C	42609249	G	C	42609249	3	2	924	1	0	0	0	0	1	0	0	0	15785	1087	38	3	3857	3	TCF20	22	42609249	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	17477485	42609249	8695317	136	74482										
TYMP	0	genome.wustl.edu	37	chr22	50967689	50967689	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gccactccagctgctgtcccGactgagccagggcctgggtc	13	16	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	22	50967689	50967689	G	C	SNP	TYMP	ENST00000252029	human	ensembl	69_37n	-1	known	missense	c.293	p.S98W	0.966	pfam_Glycosyl_Trfase_fam3_N_dom,superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708	60	0	0	74	16	17.78	-	-	-	C	50967689	G	C	50967689	3	2	924	1	0	0	0	0	1	0	0	0	16908	1059	37	3	1187	3	TYMP	22	50967689	Missense_Mutation	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	8358440	50967689	336877	137	74483										
ARSA	0	genome.wustl.edu	37	chr22	51065410	51065410	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tggccaacagtgggatggggAccaggccctggtcacagcca	15	12	1	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	22	51065410	51065410	A	T	SNP	ARSA	ENST00000216124	human	ensembl	69_37n	-1	known	missense	c.536	p.V179D	0.998	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSA	HGNC	ENSG00000100299	12	0	0	17	7	29.17	-	-	-	T	51065410	A	T	51065410	3	4	924	1	0	0	0	0	1	0	0	0	991	275	10	5	1017	5	ARSA	22	51065410	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	97721	51065410	239156	138	74484										
PNPLA4	0	genome.wustl.edu	37	chrX	7890132	7890132	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	caaacttgtaggtaaattggTtacattcctaaaaaaagaaa	6	5	0	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	7890132	7890132	T	C	SNP	PNPLA4	ENST00000381042	human	ensembl	69_37n	-1	known	missense	c.188	p.N63S	0.001	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA4	HGNC	ENSG00000006757	59	0	0	26	7	21.21	-	-	-	C	7890132	T	C	7890132	3	2	924	1	0	0	0	0	1	0	0	0	12241	1725	60	5	593	5	PNPLA4	23	7890132	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09		7890132	147380428	139	74485										
ARHGAP6	0	genome.wustl.edu	37	chrX	11162204	11162204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgtaaagcttctccgagcccCccggggccgcgtcctcttgc	11	17	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	11162204	11162204	C	A	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	missense	c.2072	p.G691V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	49	0	0	31	4	11.43	-	-	-	A	11162204	C	A	11162204	3	1	924	1	0	0	0	0	1	0	0	0	889	623	22	4	986	4	ARHGAP6	23	11162204	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	3272072	11162204	144108356	140	74486										
DDX53	0	genome.wustl.edu	37	chrX	23018405	23018405	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ataaaagatctacaacattcGacaaacactaaaatacagat	3	8	1	2			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	23018405	23018405	G	C	SNP	DDX53	ENST00000327968	human	ensembl	69_37n	1	known	silent	c.231	p.S77	0.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735	51	0	0	14	15	51.72	-	-	-	C	23018405	G	C	23018405	2	2	924	1	0	0	0	0	0	0	0	1	4402	1045	37	3		3	DDX53	23	23018405	Silent	SNP	G	TCGA-GI-A2C9-01A-11D-A21Q-09	11856201	23018405	132252155	141	74487										
TBX22	0	genome.wustl.edu	37	chrX	79279600	79279600	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tcgggtcaaggtgaaagggtTggatccagggaagcagtacc	16	7	1	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	79279600	79279600	T	A	SNP	TBX22	ENST00000373294	human	ensembl	69_37n	1	known	nonsense	c.395	p.L132*	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145	106	0	0	56	10	15.15	-	-	-	A	79279600	T	A	79279600	4	1	924	1	0	0	0	0	0	1	0	0	15753	1821	63	5	405	5	TBX22	23	79279600	Nonsense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	56261195	79279600	75990960	142	74488										
CENPI	0	genome.wustl.edu	37	chrX	100387395	100387395	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tcctagaggtgaaaccacttCtttttgaccatctagcgcag	8	11	2	3			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	100387395	100387395	C	A	SNP	CENPI	ENST00000372927	human	ensembl	69_37n	1	known	missense	c.1420	p.L474I	0.995	pfam_Centromere_CenpI	pfam_Centromere_CenpI	-	no_errors	CENPI	HGNC	ENSG00000102384	32	0	0	45	8	15.09	-	-	-	A	100387395	C	A	100387395	3	1	924	1	0	0	0	0	1	0	0	0	3262	913	32	2	1470	2	CENPI	23	100387395	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	21107795	100387395	54883165	143	74489										
ODZ1	0	genome.wustl.edu	37	chrX	123518527	123518527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	aattaattacactgaattttCcaaactgctctgttctgcca	4	10	2	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	123518527	123518527	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.6254	p.G2085E	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	86	0	0	74	14	15.91	-	-	-	T	123518527	C	T	123518527	3	4	924	1	0	0	0	0	1	0	0	0	10907	855	30	2	1956	2	ODZ1	23	123518527	Missense_Mutation	SNP	C	TCGA-GI-A2C9-01A-11D-A21Q-09	23131132	123518527	31752033	144	74490										
ODZ1	0	genome.wustl.edu	37	chrX	123839049	123839049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	tgtcagagggtagttctgacTggctgcactgaagatcgcag	14	8	2	4			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	123839049	123839049	T	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.829	p.S277R	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	20	0	0	18	6	25	-	-	-	G	123839049	T	G	123839049	3	3	924	1	0	0	0	0	1	0	0	0	10907	1580	55	5	7481	5	ODZ1	23	123839049	Missense_Mutation	SNP	T	TCGA-GI-A2C9-01A-11D-A21Q-09	320522	123839049	31431511	145	74491										
MCF2	0	genome.wustl.edu	37	chrX	138680641	138680641	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	ccagtctaagtctgtgttttAactttctttgacattcctgt	6	9	3	1			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	138680641	138680641	A	T	SNP	MCF2	ENST00000370578	human	ensembl	69_37n	-1	known	nonsense	c.2288	p.L763*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	44	0	0	24	5	17.24	-	-	-	T	138680641	A	T	138680641	4	4	924	1	0	0	0	0	0	1	0	0	9449	372	13	5	988	5	MCF2	23	138680641	Nonsense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	14841592	138680641	16589919	146	74492										
FAM3A	0	genome.wustl.edu	37	chrX	153736153	153736153	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0486111111111111	7	0.922746678348403	0.906668434309956	1.2839776585259	0.651429841457994	1	1	0	gcaactcacctccggcccacAtgtcaaaggcccgggcctcg	10	18	2	0			TCGA-GI-A2C9-01A-11D-A21Q-09	TCGA-GI-A2C9-11A-22D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5dbf3203-ce73-41e4-bf9a-32fc856f73f5	e0d54a00-8d0b-4a09-bf35-75183818d3ed	X	153736153	153736153	A	T	SNP	FAM3A	ENST00000359889	human	ensembl	69_37n	-1	known	missense	c.374	p.M125K	1.000	NULL	NULL	-	no_errors	FAM3A	HGNC	ENSG00000071889	57	0	0	36	6	14.29	-	-	-	T	153736153	A	T	153736153	3	4	924	1	0	0	0	0	1	0	0	0	5602	217	8	5	334	5	FAM3A	23	153736153	Missense_Mutation	SNP	A	TCGA-GI-A2C9-01A-11D-A21Q-09	15055512	153736153	1534407	147	74493										
MORN1	0	genome.wustl.edu	37	chr1	2252884	2252884	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgccagctgcttgaggcttCagggccttcttccaggacat	11	13	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	2252884	2252884	C	T	SNP	MORN1	ENST00000378531	human	ensembl	69_37n	-1	known	missense	c.1432	p.E478K	0.001	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151	32	0	0	26	12	31.58	-	-	-	T	2252884	C	T	2252884	3	4	925	1	0	0	0	0	1	0	0	0	9780	835	29	2	65	2	MORN1	1	2252884	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		2252884	246997737	1	74494										
NPHP4	0	genome.wustl.edu	37	chr1	5950965	5950965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagatccgatgagcagcaggGagtctccgtcccagacgtca	12	13	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	5950965	5950965	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.2267	p.S756F	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	41	0	0	27	7	20.59	-	-	-	A	5950965	G	A	5950965	3	1	925	1	0	0	0	0	1	0	0	0	10653	1174	41	2	2069	2	NPHP4	1	5950965	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3698081	5950965	243299656	2	74495										
CHD5	0	genome.wustl.edu	37	chr1	6172263	6172263	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccccttcttgtcctccttctTcccctcgtcatcttcctctt	2	20	5	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	6172263	6172263	T	C	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.5077	p.K1693E	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	108	0	0	56	41	42.27	-	-	-	C	6172263	T	C	6172263	3	2	925	1	0	0	0	0	1	0	0	0	3357	1792	62	5	815	5	CHD5	1	6172263	Missense_Mutation	SNP	T	TCGA-GM-A2D9-01A-11D-A18P-09	221298	6172263	243078358	3	74496										
PER3	0	genome.wustl.edu	37	chr1	7887394	7887394	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgccgccatggtgcccagccAggccccttacctcgtcccag	10	19	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	7887394	7887394	A	G	SNP	PER3	ENST00000361923	human	ensembl	69_37n	1	known	missense	c.2381	p.Q794R	0.205	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	34	0	0	20	8	28.57	-	-	-	G	7887394	A	G	7887394	3	3	925	1	0	0	0	0	1	0	0	0	11804	188	7	5	2447	5	PER3	1	7887394	Missense_Mutation	SNP	A	TCGA-GM-A2D9-01A-11D-A18P-09	1715131	7887394	241363227	4	74497										
CLCN6	0	genome.wustl.edu	37	chr1	11900279	11900279	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcagcactaccagaccatctGacagcccagcccaccctctc	6	20	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	11900279	11900279	G	C	SNP	CLCN6	ENST00000346436	human	ensembl	69_37n	1	known	nonstop	c.2609	p.*870S	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	43	0	0	34	9	20.93	-	-	-	C	11900279	G	C	11900279	4	2	925	1	0	0	0	0	0	0	0	0	3497	1285	45	2	2709	2	CLCN6	1	11900279	Nonstop_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4012885	11900279	237350342	5	74498										
CLCNKB	0	genome.wustl.edu	37	chr1	16377454	16377454	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	actccagcccaccctggcccGaggagctcgacccccagcac	9	21	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	16377454	16377454	G	T	SNP	CLCNKB	ENST00000375679	human	ensembl	69_37n	1	known	nonsense	c.1138	p.E380*	0.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908	67	0	0	53	11	17.19	-	-	-	T	16377454	G	T	16377454	4	4	925	1	0	0	0	0	0	1	0	0	3500	1059	37	3	1328	3	CLCNKB	1	16377454	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4477175	16377454	232873167	6	74499										
PADI6	0	genome.wustl.edu	37	chr1	17723602	17723602	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccatcgaccaacttctggctGatgaaagcctgaagaagcag	10	11	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	17723602	17723602	G	A	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	28	0	0	19	6	24	-	-	-	A	17723602	G	A	17723602	1	1	925	0	1	0	0	0	0	0	0	0	11454	1290	45	2		2	PADI6	1	17723602	RNA	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1346148	17723602	231527019	7	74500										
KDM1A	0	genome.wustl.edu	37	chr1	23408840	23408840	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccaatcactcctggcccctCgattccaggtgccccacagg	9	18	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	23408840	23408840	C	G	SNP	KDM1A	ENST00000542151	human	ensembl	69_37n	1	known	missense	c.2426	p.S809W	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487	71	0	0	54	13	19.4	-	-	-	G	23408840	C	G	23408840	3	3	925	1	0	0	0	0	1	0	0	0	8176	893	31	3	2504	3	KDM1A	1	23408840	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5685238	23408840	225841781	8	74501										
EPB41	0	genome.wustl.edu	37	chr1	29314067	29314067	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcagcaggaggaatcttgtCaaacagcagctgaaggagat	12	8	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	29314067	29314067	C	G	SNP	EPB41	ENST00000343067	human	ensembl	69_37n	1	known	missense	c.118	p.Q40E	0.115	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	52	0	0	50	12	19.35	-	-	-	G	29314067	C	G	29314067	3	3	925	1	0	0	0	0	1	0	0	0	5188	827	29	2	120	2	EPB41	1	29314067	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5905227	29314067	219936554	9	74502										
ZBTB8OS	0	genome.wustl.edu	37	chr1	33099258	33099258	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgcttacccggggtatgaaGaattcatcagcactgaactt	9	9	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	33099258	33099258	G	A	SNP	ZBTB8OS	ENST00000436661	human	ensembl	69_37n	-1	known	missense	c.346	p.L116F	1.000	pfam_Archease_dom,superfamily_Archease_dom	pfam_Archease_dom,superfamily_Archease_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZBTB8OS	HGNC	ENSG00000176261	20	0	0	23	13	36.11	-	-	-	A	33099258	G	A	33099258	3	1	925	1	0	0	0	0	1	0	0	0	17653	933	33	2	204	2	ZBTB8OS	1	33099258	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3785191	33099258	216151363	10	74503										
CLSPN	0	genome.wustl.edu	37	chr1	36225955	36225955	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggattacctctgttggtttCaggttcaagtatcacaaagg	10	7	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	36225955	36225955	C	T	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	missense	c.1567	p.E523K	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	74	0	0	50	16	24.24	-	-	-	T	36225955	C	T	36225955	3	4	925	1	0	0	0	0	1	0	0	0	3590	835	29	2	2524	2	CLSPN	1	36225955	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3126697	36225955	213024666	11	74504										
MACF1	0	genome.wustl.edu	37	chr1	39917982	39917982	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggacactgtctgtaaactctCtgtttccaaacaaagccggc	8	12	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	39917982	39917982	C	A	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	1	known	missense	c.14396	p.S4799Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	54	0	0	39	5	11.36	-	-	-	A	39917982	C	A	39917982	3	1	925	1	0	0	0	0	1	0	0	0	9211	913	32	2	20873	2	MACF1	1	39917982	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3692027	39917982	209332639	12	74505										
HEYL	0	genome.wustl.edu	37	chr1	40092629	40092629	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agccctggacagctatggaaGaaagaccagggccaggcagg	15	10	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	40092629	40092629	G	C	SNP	HEYL	ENST00000372852	human	ensembl	69_37n	-1	known	missense	c.537	p.F179L	1.000	NULL	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEYL	HGNC	ENSG00000163909	37	0	0	16	4	20	-	-	-	C	40092629	G	C	40092629	3	2	925	1	0	0	0	0	1	0	0	0	7131	933	33	2	453	2	HEYL	1	40092629	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	174647	40092629	209157992	13	74506										
TTC4	0	genome.wustl.edu	37	chr1	55182279	55182279	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttaaccatttacaggaatttGaaaaggtccccctatttatg	6	8	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	55182279	55182279	G	C	SNP	TTC4	ENST00000371281	human	ensembl	69_37n	1	known	missense	c.118	p.E40Q	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725	71	0	0	48	16	24.62	-	-	-	C	55182279	G	C	55182279	3	2	925	1	0	0	0	0	1	0	0	0	16807	1291	45	2	124	2	TTC4	1	55182279	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	15089650	55182279	194068342	14	74507										
PARS2	0	genome.wustl.edu	37	chr1	55224384	55224384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agttggtcctaagcagtattCcttgccatgcctgtctctaa	8	11	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	55224384	55224384	C	T	SNP	PARS2	ENST00000371279	human	ensembl	69_37n	-1	known	missense	c.451	p.E151K	0.999	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,superfamily_Anticodon-bd,pfscan_aa-tRNA-synth_II,prints_Pro-tRNA-synth_IIa	-	no_errors	PARS2	HGNC	ENSG00000162396	66	0	0	38	16	29.63	-	-	-	T	55224384	C	T	55224384	3	4	925	1	0	0	0	0	1	0	0	0	11540	864	30	2	980	2	PARS2	1	55224384	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	42105	55224384	194026237	15	74508										
DAB1	0	genome.wustl.edu	37	chr1	57480804	57480804	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcttgtcggtctgtggacttGacctggtggagtcactcgtg	15	9	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	57480804	57480804	G	A	SNP	DAB1	ENST00000371231	human	ensembl	69_37n	-1	known	missense	c.1295	p.S432L	1.000	NULL	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	-	no_errors	DAB1	HGNC	ENSG00000173406	74	0	0	56	10	15.15	-	-	-	A	57480804	G	A	57480804	3	1	925	1	0	0	0	0	1	0	0	0	4249	1294	45	2	483	2	DAB1	1	57480804	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2256420	57480804	191769817	16	74509										
DOCK7	0	genome.wustl.edu	37	chr1	62979159	62979159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taccgagctgtcctcggcttCgccgtaccatttcttgcctg	9	15	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	62979159	62979159	C	T	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4238	p.R1413Q	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	87	0	0	65	32	32.99	-	-	-	T	62979159	C	T	62979159	3	4	925	1	0	0	0	0	1	0	0	0	4727	884	31	1	2256	1	DOCK7	1	62979159	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5498355	62979159	186271462	17	74510										
LRRC8C	0	genome.wustl.edu	37	chr1	90180536	90180536	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccgggagcaaatgaaaacaGaataacttatttttcgttaa	7	6	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	90180536	90180536	G	C	SNP	LRRC8C	ENST00000370454	human	ensembl	69_37n	1	known	missense	c.2407	p.E803Q	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488	31	0	0	33	11	25	-	-	-	C	90180536	G	C	90180536	3	2	925	1	0	0	0	0	1	0	0	0	9089	943	33	2	2413	2	LRRC8C	1	90180536	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	27201377	90180536	159070085	18	74511										
AHCYL1	0	genome.wustl.edu	37	chr1	110563430	110563430	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagatgaccaagcaaaatatCtgggactcaacaaaaatggg	9	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	110563430	110563430	C	T	SNP	AHCYL1	ENST00000369799	human	ensembl	69_37n	1	known	silent	c.1543	p.L515	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710	62	0	0	41	19	31.67	-	-	-	T	110563430	C	T	110563430	2	4	925	1	0	0	0	0	0	0	0	1	410	912	32	2		2	AHCYL1	1	110563430	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	20382894	110563430	138687191	19	74512										
KCND3	0	genome.wustl.edu	37	chr1	112319680	112319680	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gagggctgctcactgccctgGatgtggatcgtgctgagctc	15	11	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	112319680	112319680	G	A	SNP	KCND3	ENST00000315987	human	ensembl	69_37n	-1	known	silent	c.1734	p.I578	1.000	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385	80	0	0	90	15	14.29	-	-	-	A	112319680	G	A	112319680	2	1	925	1	0	0	0	0	0	0	0	1	8074	1164	41	2		2	KCND3	1	112319680	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1756250	112319680	136930941	20	74513										
TRIM33	0	genome.wustl.edu	37	chr1	114940464	114940464	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcaactgctttccctgcctGagctacttctgaatcagcct	7	14	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	114940464	114940464	G	A	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	nonsense	c.3190	p.Q1064*	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	64	0	0	49	21	30	-	-	-	A	114940464	G	A	114940464	4	1	925	1	0	0	0	0	0	1	0	0	16603	1299	45	2	197	2	TRIM33	1	114940464	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2620784	114940464	134310157	21	74514										
DENND2C	0	genome.wustl.edu	37	chr1	115137127	115137127	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgctcctgagtcaagatttCatttcgttcttccaaaatct	5	11	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	115137127	115137127	C	G	SNP	DENND2C	ENST00000393274	human	ensembl	69_37n	-1	known	missense	c.2398	p.E800Q	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	115	0	0	83	22	20.95	-	-	-	G	115137127	C	G	115137127	3	3	925	1	0	0	0	0	1	0	0	0	4466	835	29	2	404	2	DENND2C	1	115137127	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	196663	115137127	134113494	22	74515										
ANXA9	0	genome.wustl.edu	37	chr1	150958868	150958868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agaccagtggcatcttgcagGacctgctgttggccctggcc	13	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	150958868	150958868	G	A	SNP	ANXA9	ENST00000368947	human	ensembl	69_37n	1	known	missense	c.529	p.D177N	0.994	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXXXI	-	no_errors	ANXA9	HGNC	ENSG00000143412	49	0	0	66	25	27.47	-	-	-	A	150958868	G	A	150958868	3	1	925	1	0	0	0	0	1	0	0	0	726	1174	41	2	551	2	ANXA9	1	150958868	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	35821741	150958868	98291753	23	74516										
TCHH	0	genome.wustl.edu	37	chr1	152080607	152080607	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acggcggagctgctgttcctCttcgcggaattttctgtcac	11	12	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	152080607	152080607	C	T	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.5086	p.E1696K	0.472	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	102	0	0	148	26	14.94	-	-	-	T	152080607	C	T	152080607	3	4	925	1	0	0	0	0	1	0	0	0	15795	922	32	2	749	2	TCHH	1	152080607	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1121739	152080607	97170014	24	74517										
FLG2	0	genome.wustl.edu	37	chr1	152324572	152324572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttggctgtgtgtgtgtcctGaatgtgtatgtgagccccct	13	9	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	152324572	152324572	G	A	SNP	FLG2	ENST00000388718	human	ensembl	69_37n	-1	known	missense	c.5690	p.S1897L	0.010	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	231	1	0.43	280	64	18.6	-	-	-	A	152324572	G	A	152324572	3	1	925	1	0	0	0	0	1	0	0	0	5969	1294	45	2	1489	2	FLG2	1	152324572	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	243965	152324572	96926049	25	74518										
GON4L	0	genome.wustl.edu	37	chr1	155733331	155733331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	catgcgcctttcagatgccaGccaagtcagtttctccattg	8	13	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	155733331	155733331	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	silent	c.4498	p.L1500	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	138	0	0	212	27	11.25	-	-	-	A	155733331	G	A	155733331	2	1	925	1	0	0	0	0	0	0	0	1	6621	962	34	4		4	GON4L	1	155733331	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3408759	155733331	93517290	26	74519										
LMNA	0	genome.wustl.edu	37	chr1	156084959	156084959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcaaggccgcctacgaggccGagctcggggatgcccgcaag	15	14	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	156084959	156084959	G	A	SNP	LMNA	ENST00000368300	human	ensembl	69_37n	1	known	missense	c.250	p.E84K	1.000	pfam_F,superfamily_Prefoldin	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	21	0	0	27	8	22.86	-	-	-	A	156084959	G	A	156084959	3	1	925	1	0	0	0	0	1	0	0	0	8904	1059	37	1	252	1	LMNA	1	156084959	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	351628	156084959	93165662	27	74520										
IQGAP3	0	genome.wustl.edu	37	chr1	156531732	156531732	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcagggtcttgaagggccttGagcaaggcttcagggctctg	16	9	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	156531732	156531732	G	T	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	silent	c.939	p.L313	0.084	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	63	0	0	70	12	14.63	-	-	-	T	156531732	G	T	156531732	2	4	925	1	0	0	0	0	0	0	0	1	7870	1277	45	2		2	IQGAP3	1	156531732	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	446773	156531732	92718889	28	74521										
ARHGEF11	0	genome.wustl.edu	37	chr1	156917130	156917130	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agttcaggcaggttcgggaaGagccgggccagctcctcccg	15	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	156917130	156917130	G	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.2454	p.L818	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	49	0	0	69	19	21.59	-	-	-	C	156917130	G	C	156917130	2	2	925	1	0	0	0	0	0	0	0	1	898	929	33	2		2	ARHGEF11	1	156917130	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	385398	156917130	92333491	29	74522										
ARHGEF11	0	genome.wustl.edu	37	chr1	156917199	156917199	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggtagaagatcaggtccagGacccggagtgtgcgcaggtg	17	8	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	156917199	156917199	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	69_37n	-1	known	silent	c.2385	p.V795	0.995	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,pfam_Regulat_G_prot_signal,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	46	0	0	51	8	13.56	-	-	-	A	156917199	G	A	156917199	2	1	925	1	0	0	0	0	0	0	0	1	898	1161	41	2		2	ARHGEF11	1	156917199	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	69	156917199	92333422	30	74523										
AIM2	0	genome.wustl.edu	37	chr1	159043091	159043091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	attcaacttctgaaaaatacGaatggtcttcatcactgcag	6	9	5	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	159043091	159043091	G	C	SNP	AIM2	ENST00000368130	human	ensembl	69_37n	-1	known	missense	c.199	p.R67G	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,superfamily_NA-bd_OB-fold-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	60	0	0	66	9	12	-	-	-	C	159043091	G	C	159043091	3	2	925	1	0	0	0	0	1	0	0	0	432	1058	37	3	852	3	AIM2	1	159043091	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2125892	159043091	90207530	31	74524										
OR10J1	0	genome.wustl.edu	37	chr1	159410499	159410499	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgtgcagggctgttggtggGaagttttcctgaccatgtag	15	7	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	159410499	159410499	G	T	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	silent	c.951	p.G317	0.009	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	21	0	0	29	18	38.3	-	-	-	T	159410499	G	T	159410499	2	4	925	1	0	0	0	0	0	0	0	1	10983	1161	41	2		2	OR10J1	1	159410499	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	367408	159410499	89840122	32	74525										
ITLN2	0	genome.wustl.edu	37	chr1	160924223	160924223	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gagaagaataacaggaagcaGagtctggtcattgtcctcta	11	7	3	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	160924223	160924223	G	C	SNP	ITLN2	ENST00000368029	human	ensembl	69_37n	-1	known	silent	c.33	p.L11	0.000	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN2	HGNC	ENSG00000158764	83	0	0	111	14	11.2	-	-	-	C	160924223	G	C	160924223	2	2	925	1	0	0	0	0	0	0	0	1	7965	929	33	2		2	ITLN2	1	160924223	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1513724	160924223	88326398	33	74526										
KLHDC9	0	genome.wustl.edu	37	chr1	161069897	161069897	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttcccctgtgcagatcgtggGatgaaacgcatgggccatcg	13	11	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	161069897	161069897	G	A	SNP	KLHDC9	ENST00000368011	human	ensembl	69_37n	1	known	silent	c.933	p.G311	0.001	superfamily_Gal_Oxase/kelch_b-propeller	superfamily_Gal_Oxase/kelch_b-propeller	-	no_errors	KLHDC9	HGNC	ENSG00000162755	74	0	0	110	30	21.43	-	-	-	A	161069897	G	A	161069897	2	1	925	1	0	0	0	0	0	0	0	1	8417	1161	41	2		2	KLHDC9	1	161069897	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	145674	161069897	88180724	34	74527										
FCRLB	0	genome.wustl.edu	37	chr1	161695787	161695787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgttacaggcgcgtgccagcGacagcgggcgctaccagtgc	15	13	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	161695787	161695787	G	A	SNP	FCRLB	ENST00000367948	human	ensembl	69_37n	1	known	missense	c.484	p.D162N	0.997	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like	-	no_errors	FCRLB	HGNC	ENSG00000162746	37	0	0	48	7	12.73	-	-	-	A	161695787	G	A	161695787	3	1	925	1	0	0	0	0	1	0	0	0	5847	1058	37	1	498	1	FCRLB	1	161695787	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	625890	161695787	87554834	35	74528										
DUSP12	0	genome.wustl.edu	37	chr1	161721745	161721745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcaatttataagcaatatcGtttacaaaaggttacagaga	7	5	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	161721745	161721745	G	A	SNP	DUSP12	ENST00000367943	human	ensembl	69_37n	1	known	missense	c.548	p.R183H	1.000	pirsf_DUSP12	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_DUSP12,pfscan_Znf_C2H2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP12	HGNC	ENSG00000081721	59	0	0	117	17	12.69	-	-	-	A	161721745	G	A	161721745	3	1	925	1	0	0	0	0	1	0	0	0	4847	1145	40	1	558	1	DUSP12	1	161721745	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	25958	161721745	87528876	36	74529										
ATF6	0	genome.wustl.edu	37	chr1	161823031	161823031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taggttaaatcatgaacttcGaggatgggttcatagacatg	11	5	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	161823031	161823031	G	A	SNP	ATF6	ENST00000367942	human	ensembl	69_37n	1	known	missense	c.1451	p.R484Q	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217	40	0	0	57	7	10.94	-	-	-	A	161823031	G	A	161823031	3	1	925	1	0	0	0	0	1	0	0	0	1088	1058	37	1	1497	1	ATF6	1	161823031	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	101286	161823031	87427590	37	74530										
ASTN1	0	genome.wustl.edu	37	chr1	176833446	176833446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctctttgctgtccccatagtCgttgtaggggatactcaggg	12	10	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	176833446	176833446	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	69_37n	-1	known	missense	c.3883	p.D1295N	1.000	NULL	superfamily_Fibronectin_type3,smart_EGF-like,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092	67	0	0	79	13	14.13	-	-	-	T	176833446	C	T	176833446	3	4	925	1	0	0	0	0	1	0	0	0	1068	884	31	1	29	1	ASTN1	1	176833446	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	15010415	176833446	72417175	38	74531										
NPHS2	0	genome.wustl.edu	37	chr1	179520502	179520502	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggtgtggaggtatcgaagctGaacggcagcaggggtgcctg	19	7	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	179520502	179520502	G	C	SNP	NPHS2	ENST00000367615	human	ensembl	69_37n	-1	known	missense	c.958	p.Q320E	0.997	prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218	33	0	0	57	7	10.94	-	-	-	C	179520502	G	C	179520502	3	2	925	1	0	0	0	0	1	0	0	0	10655	1299	45	2	197	2	NPHS2	1	179520502	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2687056	179520502	69730119	39	74532										
CEP350	0	genome.wustl.edu	37	chr1	180062597	180062597	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccatagcaatgttcattctGacaggctgttggaactcaag	9	9	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	180062597	180062597	G	C	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.7357	p.D2453H	0.967	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	30	0	0	36	9	20	-	-	-	C	180062597	G	C	180062597	3	2	925	1	0	0	0	0	1	0	0	0	3283	1290	45	2	7487	2	CEP350	1	180062597	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	542095	180062597	69188024	40	74533										
CEP350	0	genome.wustl.edu	37	chr1	180062700	180062700	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgaatccccttccttggcttCagttcctactgcagacgagt	8	13	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	180062700	180062700	C	A	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	nonsense	c.7460	p.S2487*	0.268	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	33	0	0	53	6	10.17	-	-	-	A	180062700	C	A	180062700	4	1	925	1	0	0	0	0	0	1	0	0	3283	838	29	2	7590	2	CEP350	1	180062700	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	103	180062700	69187921	41	74534										
LAMC2	0	genome.wustl.edu	37	chr1	183184715	183184715	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcggggtgcacccaagaccaGagactgctgtgagtatttgc	14	10	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	183184715	183184715	G	C	SNP	LAMC2	ENST00000264144	human	ensembl	69_37n	1	known	missense	c.396	p.Q132H	0.048	superfamily_Growth_fac_rcpt	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	59	0	0	75	13	14.77	-	-	-	C	183184715	G	C	183184715	3	2	925	1	0	0	0	0	1	0	0	0	8669	933	33	2	406	2	LAMC2	1	183184715	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3122015	183184715	66065906	42	74535										
NEK7	0	genome.wustl.edu	37	chr1	198222169	198222169	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctgacatttttaattacaGaaggccttacgaccggatat	7	8	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	198222169	198222169	G	C	SNP	NEK7	ENST00000367385	human	ensembl	69_37n	1	known	splice_site	c.58-1	e2-1	1.000	-	-	-	no_errors	NEK7	HGNC	ENSG00000151414	18	0	0	36	10	21.74	-	-	-	C	198222169	G	C	198222169	5	2	925	1	0	0	0	0	0	0	1	0	10401	956	33	2	63	2	NEK7	1	198222169	Splice_Site	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	15037454	198222169	51028452	43	74536										
RNPEP	0	genome.wustl.edu	37	chr1	201969071	201969071	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggctgcaacggggcgggctCtgctgcgtcagcacatggac	16	12	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	201969071	201969071	C	T	SNP	RNPEP	ENST00000295640	human	ensembl	69_37n	1	known	silent	c.1132	p.L378	0.984	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393	44	0	0	56	14	20	-	-	-	T	201969071	C	T	201969071	2	4	925	1	0	0	0	0	0	0	0	1	13595	912	32	2		2	RNPEP	1	201969071	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3746902	201969071	47281550	44	74537										
PIK3C2B	0	genome.wustl.edu	37	chr1	204411737	204411737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggcaaagaactgcttcacctCctccaggcccgtgcggagga	12	14	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	204411737	204411737	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.3073	p.E1025K	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	40	0	0	48	12	20	-	-	-	T	204411737	C	T	204411737	3	4	925	1	0	0	0	0	1	0	0	0	11984	864	30	2	1887	2	PIK3C2B	1	204411737	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2442666	204411737	44838884	45	74538										
CD46	0	genome.wustl.edu	37	chr1	207930399	207930399	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acatttgaagctatggagctCattggtaaaccaaaacccta	7	9	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	207930399	207930399	C	T	SNP	CD46	ENST00000322875	human	ensembl	69_37n	1	known	silent	c.138	p.L46	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_M_CF_CD46,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pirsf_M_CF_CD46,pfscan_Sushi_SCR_CCP	-	no_errors	CD46	HGNC	ENSG00000117335	43	0	0	71	9	11.25	-	-	-	T	207930399	C	T	207930399	2	4	925	1	0	0	0	0	0	0	0	1	3047	813	29	2		2	CD46	1	207930399	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3518662	207930399	41320222	46	74539										
C1orf74	0	genome.wustl.edu	37	chr1	209956721	209956721	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caggctgttttctccaatctCaaggatgtgaagtccaaaag	9	9	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	209956721	209956721	C	T	SNP	C1orf74	ENST00000294811	human	ensembl	69_37n	-1	known	missense	c.259	p.E87K	0.983	NULL	NULL	-	no_errors	C1orf74	HGNC	ENSG00000162757	44	0	0	72	9	11.11	-	-	-	T	209956721	C	T	209956721	3	4	925	1	0	0	0	0	1	0	0	0	2078	835	29	2	554	2	C1orf74	1	209956721	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2026322	209956721	39293900	47	74540										
FAM71A	0	genome.wustl.edu	37	chr1	212798754	212798754	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acctcttgcggccacccatgGagagtaacagcagtacctgt	10	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	212798754	212798754	G	T	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	nonsense	c.535	p.E179*	0.693	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	16	0	0	21	6	22.22	-	-	-	T	212798754	G	T	212798754	4	4	925	1	0	0	0	0	0	1	0	0	5652	1175	41	2	537	2	FAM71A	1	212798754	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2842033	212798754	36451867	48	74541										
RAB3GAP2	0	genome.wustl.edu	37	chr1	220355610	220355610	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaaccttaccaacaacagctGagggctaagaccagccgact	8	13	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	220355610	220355610	G	A	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	nonsense	c.2299	p.Q767*	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	41	0	0	53	35	39.77	-	-	-	A	220355610	G	A	220355610	4	1	925	1	0	0	0	0	0	1	0	0	13019	1299	45	2	1942	2	RAB3GAP2	1	220355610	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	7556856	220355610	28895011	49	74542										
OBSCN	0	genome.wustl.edu	37	chr1	228509242	228509242	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagcaggaagggcccatgttCtcccacacatttggggacac	11	13	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	228509242	228509242	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.14700	p.F4900	0.090	pfam_Ig_I-set,pfscan_IQ_motif_EF-hand-BS,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	41	0	0	41	12	22.64	-	-	-	T	228509242	C	T	228509242	2	4	925	1	0	0	0	0	0	0	0	1	10885	912	32	2		2	OBSCN	1	228509242	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	8153632	228509242	20741379	50	74543										
KIAA1804	0	genome.wustl.edu	37	chr1	233515233	233515233	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctggtggacagtgcacctgtCacttgtgactctgagatgct	12	10	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	233515233	233515233	C	G	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	1	known	silent	c.2481	p.V827	0.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	41	0	0	48	11	18.64	-	-	-	G	233515233	C	G	233515233	2	3	925	1	0	0	0	0	0	0	0	1	8311	813	29	2		2	KIAA1804	1	233515233	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5005991	233515233	15735388	51	74544										
SLC35F3	0	genome.wustl.edu	37	chr1	234458869	234458869	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaggagtgggatgtctggttGatcaagctgctcacccgact	14	9	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	234458869	234458869	G	C	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	1	known	missense	c.1353	p.L451F	0.999	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	67	0	0	114	17	12.98	-	-	-	C	234458869	G	C	234458869	3	2	925	1	0	0	0	0	1	0	0	0	14679	1281	45	2	1383	2	SLC35F3	1	234458869	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	943636	234458869	14791752	52	74545										
NID1	0	genome.wustl.edu	37	chr1	236211999	236211999	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggggagcttaccttgcctttCtggtctgggtccctgctggg	15	11	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	236211999	236211999	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	silent	c.516	p.Q172	0.028	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	45	0	0	55	12	17.91	-	-	-	T	236211999	C	T	236211999	2	4	925	1	0	0	0	0	0	0	0	1	10486	912	32	2		2	NID1	1	236211999	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1753130	236211999	13038622	53	74546										
OR2L13	0	genome.wustl.edu	37	chr1	248263205	248263205	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctagggctattgaccatttCttctgcgatgtcccagccat	8	12	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	1	248263205	248263205	C	T	SNP	OR2L13	ENST00000358120	human	ensembl	69_37n	1	known	silent	c.528	p.F176	0.828	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L13	HGNC	ENSG00000196071	130	0	0	169	35	17.16	-	-	-	T	248263205	C	T	248263205	2	4	925	1	0	0	0	0	0	0	0	1	11079	912	32	2		2	OR2L13	1	248263205	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12051206	248263205	987416	54	74547										
PXDN	0	genome.wustl.edu	37	chr2	1680709	1680709	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cccaactcacttgtttcgcaGccagatgatctcaggcttgg	9	13	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	1680709	1680709	G	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	silent	c.838	p.L280	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	45	0	0	25	9	26.47	-	-	-	A	1680709	G	A	1680709	2	1	925	1	0	0	0	0	0	0	0	1	12930	962	34	4		4	PXDN	2	1680709	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		1680709	241518664	55	74548										
THUMPD2	0	genome.wustl.edu	37	chr2	39963984	39963984	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggagccaaatggtgacattCtgtctaagaatttgtggtta	11	5	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	39963984	39963984	C	G	SNP	THUMPD2	ENST00000505747	human	ensembl	69_37n	-1	known	missense	c.1403	p.R468T	0.000	NULL	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_THUMP,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD2	HGNC	ENSG00000138050	106	0	0	75	25	25	-	-	-	G	39963984	C	G	39963984	3	3	925	1	0	0	0	0	1	0	0	0	15978	913	32	2	112	2	THUMPD2	2	39963984	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	38283275	39963984	203235389	56	74549										
ABCG8	0	genome.wustl.edu	37	chr2	44102320	44102320	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccggagcactgtgcctacatCatcatctacgggatgcccac	9	15	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	44102320	44102320	C	T	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	1	known	silent	c.1524	p.I508	0.025	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	37	0	0	30	15	33.33	-	-	-	T	44102320	C	T	44102320	2	4	925	1	0	0	0	0	0	0	0	1	72	816	29	2		2	ABCG8	2	44102320	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4138336	44102320	199097053	57	74550										
ABCG8	0	genome.wustl.edu	37	chr2	44102524	44102524	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctacctcgccgggggcttCatgataaacttgagcagcct	10	12	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	44102524	44102524	C	A	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	1	known	missense	c.1728	p.F576L	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	47	0	0	23	9	28.12	-	-	-	A	44102524	C	A	44102524	3	1	925	1	0	0	0	0	1	0	0	0	72	825	29	2	1770	2	ABCG8	2	44102524	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	204	44102524	199096849	58	74551										
EHBP1	0	genome.wustl.edu	37	chr2	63085619	63085619	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaagcaagcaaatatgcgttCagctaaatcagccagttcct	7	10	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	63085619	63085619	C	T	SNP	EHBP1	ENST00000263991	human	ensembl	69_37n	1	known	missense	c.713	p.S238L	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	70	0	0	95	16	14.41	-	-	-	T	63085619	C	T	63085619	3	4	925	1	0	0	0	0	1	0	0	0	5010	838	29	2	739	2	EHBP1	2	63085619	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18983095	63085619	180113754	59	74552										
PCYOX1	0	genome.wustl.edu	37	chr2	70502110	70502110	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggatctaccgctaccagtctCatgactatgccttcagtagt	8	12	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	70502110	70502110	C	G	SNP	PCYOX1	ENST00000433351	human	ensembl	69_37n	1	known	missense	c.514	p.H172D	0.999	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005	66	0	0	46	20	30.3	-	-	-	G	70502110	C	G	70502110	3	3	925	1	0	0	0	0	1	0	0	0	11681	826	29	2	528	2	PCYOX1	2	70502110	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7416491	70502110	172697263	60	74553										
KCMF1	0	genome.wustl.edu	37	chr2	85276734	85276734	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tagctaatacagaaagcagtCagcagactctacagaattcc	7	10	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	85276734	85276734	C	T	SNP	KCMF1	ENST00000409785	human	ensembl	69_37n	1	known	nonsense	c.847	p.Q283*	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_RING_finger_144,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407	106	0	0	101	14	12.17	-	-	-	T	85276734	C	T	85276734	4	4	925	1	0	0	0	0	0	1	0	0	8054	827	29	2	869	2	KCMF1	2	85276734	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	14774624	85276734	157922639	61	74554										
PROM2	0	genome.wustl.edu	37	chr2	95946989	95946989	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctgcctctcgcctaccccaGaggtgtgggcctcagcttcc	10	18	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	95946989	95946989	G	A	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	splice_site	c.1428-1	e12-1	0.995	-	-	-	no_errors	PROM2	HGNC	ENSG00000155066	38	0	0	22	11	33.33	-	-	-	A	95946989	G	A	95946989	5	1	925	1	0	0	0	0	0	0	1	0	12637	956	33	2	1473	2	PROM2	2	95946989	Splice_Site	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	10670255	95946989	147252384	62	74555										
FAHD2A	0	genome.wustl.edu	37	chr2	96071539	96071539	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcagggagaggccaccctctCagtggcaagaaggtaagtaa	14	9	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	96071539	96071539	C	T	SNP	FAHD2A	ENST00000233379	human	ensembl	69_37n	1	known	missense	c.233	p.S78L	0.048	NULL	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042	79	0	0	48	14	22.58	-	-	-	T	96071539	C	T	96071539	3	4	925	1	0	0	0	0	1	0	0	0	5413	838	29	2	235	2	FAHD2A	2	96071539	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	124550	96071539	147127834	63	74556										
VWA3B	0	genome.wustl.edu	37	chr2	98709585	98709585	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcaggcccatcttctaccatCtctgagcagcagctgcagag	9	14	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	98709585	98709585	C	G	SNP	VWA3B	ENST00000477737	human	ensembl	69_37n	1	known	missense	c.30	p.I10M	0.042	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658	45	0	0	29	11	27.5	-	-	-	G	98709585	C	G	98709585	3	3	925	1	0	0	0	0	1	0	0	0	17338	903	32	2	32	2	VWA3B	2	98709585	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2638046	98709585	144489788	64	74557										
TGFBRAP1	0	genome.wustl.edu	37	chr2	105897092	105897092	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caggtctgcgtactcatgaaGaggagggtgggaccgggtga	18	7	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	105897092	105897092	G	C	SNP	TGFBRAP1	ENST00000258449	human	ensembl	69_37n	-1	known	missense	c.1210	p.L404V	1.000	NULL	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	63	0	0	51	21	29.17	-	-	-	C	105897092	G	C	105897092	3	2	925	1	0	0	0	0	1	0	0	0	15919	942	33	2	1400	2	TGFBRAP1	2	105897092	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	7187507	105897092	137302281	65	74558										
RANBP2	0	genome.wustl.edu	37	chr2	109381005	109381005	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taacaaggatatttgcaaatCtgatgctggaaacctgaatt	8	6	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	109381005	109381005	C	G	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	1	known	missense	c.4010	p.S1337C	0.989	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	26	0	0	30	5	14.29	-	-	-	G	109381005	C	G	109381005	3	3	925	1	0	0	0	0	1	0	0	0	13111	913	32	2	4088	2	RANBP2	2	109381005	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3483913	109381005	133818368	66	74559										
SMPD4	0	genome.wustl.edu	37	chr2	130939134	130939134	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atagcgtcgctcgcctcagaGatggaagccgccattccgcc	11	15	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	130939134	130939134	G	A	SNP	SMPD4	ENST00000409031	human	ensembl	69_37n	-1	known	missense	c.41	p.S14F	0.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699	8	0	0	1	9	90	-	-	-	A	130939134	G	A	130939134	3	1	925	1	0	0	0	0	1	0	0	0	14896	942	33	2	2639	2	SMPD4	2	130939134	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	21558129	130939134	112260239	67	74560										
YSK4	0	genome.wustl.edu	37	chr2	135738782	135738782	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taccacacagttctcatggaGataagcaacaccttgaagta	7	10	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	135738782	135738782	G	A	SNP	YSK4	ENST00000375845	human	ensembl	69_37n	-1	known	missense	c.3529	p.L1177F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	YSK4	HGNC	ENSG00000176601	80	0	0	50	22	30.56	-	-	-	A	135738782	G	A	135738782	3	1	925	1	0	0	0	0	1	0	0	0	17592	942	33	2	465	2	YSK4	2	135738782	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4799648	135738782	107460591	68	74561										
MYO3B	0	genome.wustl.edu	37	chr2	171240300	171240300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcagatgctgcttaccagtgCatggttactctcagcaaaga	10	10	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	171240300	171240300	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	1	known	silent	c.1293	p.C431	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	79	0	0	57	19	24.68	-	-	-	T	171240300	C	T	171240300	2	4	925	1	0	0	0	0	0	0	0	1	10149	718	25	4		4	MYO3B	2	171240300	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	35501518	171240300	71959073	69	74562										
DFNB59	0	genome.wustl.edu	37	chr2	179319227	179319227	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caaacatgaagtggaagtatCaacattactcaaagaaatta	6	6	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	179319227	179319227	C	G	SNP	DFNB59	ENST00000375129	human	ensembl	69_37n	1	known	nonsense	c.380	p.S127*	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311	29	0	0	24	11	31.43	-	-	-	G	179319227	C	G	179319227	4	3	925	1	0	0	0	0	0	1	0	0	4492	838	29	2	386	2	DFNB59	2	179319227	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	8078927	179319227	63880146	70	74563										
DFNB59	0	genome.wustl.edu	37	chr2	179320818	179320818	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgtgtggtcatggagagcatCcgaaccacacgacagtgctc	12	11	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	179320818	179320818	C	G	SNP	DFNB59	ENST00000375129	human	ensembl	69_37n	1	known	missense	c.489	p.I163M	0.998	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311	23	0	0	17	9	34.62	-	-	-	G	179320818	C	G	179320818	3	3	925	1	0	0	0	0	1	0	0	0	4492	845	30	2	499	2	DFNB59	2	179320818	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1591	179320818	63878555	71	74564										
TTN	0	genome.wustl.edu	37	chr2	179485612	179485612	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caaatatagcttcttcatttCtgaaccatttggctttggca	6	9	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	179485612	179485612	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.38021	p.R12674T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	85	0	0	59	16	21.33	-	-	-	G	179485612	C	G	179485612	3	3	925	1	0	0	0	0	1	0	0	0	16832	913	32	2	62432	2	TTN	2	179485612	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	164794	179485612	63713761	72	74565										
TTN	0	genome.wustl.edu	37	chr2	179586739	179586739	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggacggatctccttgttatCttttgaccaagtgattcgca	9	9	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	179586739	179586739	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.18919	p.D6307H	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	118	0	0	81	36	30.77	-	-	-	G	179586739	C	G	179586739	3	3	925	1	0	0	0	0	1	0	0	0	16832	913	32	2	82018	2	TTN	2	179586739	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	101127	179586739	63612634	73	74566										
HSPD1	0	genome.wustl.edu	37	chr2	198360068	198360068	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttagactgctttttaagttCagcaattacagcatcaacag	6	8	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	198360068	198360068	C	T	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	missense	c.460	p.E154K	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	96	0	0	93	13	12.26	-	-	-	T	198360068	C	T	198360068	3	4	925	1	0	0	0	0	1	0	0	0	7482	835	29	2	1297	2	HSPD1	2	198360068	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18773329	198360068	44839305	74	74567										
SMARCAL1	0	genome.wustl.edu	37	chr2	217329355	217329355	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gatgccctcattctcttcttCaacagaacagctgaagctaa	6	12	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	217329355	217329355	C	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	69_37n	1	known	missense	c.2106	p.F702L	1.000	NULL	pfam_HARP,pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	79	0	0	71	8	10	-	-	-	G	217329355	C	G	217329355	3	3	925	1	0	0	0	0	1	0	0	0	14862	825	29	2	2148	2	SMARCAL1	2	217329355	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18969287	217329355	25870018	75	74568										
RUFY4	0	genome.wustl.edu	37	chr2	218935485	218935485	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctcccagcagctgccgtctCtgccatcctccagggctatg	9	18	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	218935485	218935485	C	G	SNP	RUFY4	ENST00000374155	human	ensembl	69_37n	1	known	missense	c.56	p.S19C	0.669	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,pfscan_Run	-	no_errors	RUFY4	HGNC	ENSG00000188282	32	0	0	21	10	32.26	-	-	-	G	218935485	C	G	218935485	3	3	925	1	0	0	0	0	1	0	0	0	13827	913	32	2	62	2	RUFY4	2	218935485	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1606130	218935485	24263888	76	74569										
INHA	0	genome.wustl.edu	37	chr2	220439988	220439988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgggctgggaacggtggatcGtgtaccctcccagtttcatc	13	11	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	220439988	220439988	G	A	SNP	INHA	ENST00000243786	human	ensembl	69_37n	1	known	missense	c.841	p.V281M	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	82	0	0	57	14	19.72	-	-	-	A	220439988	G	A	220439988	3	1	925	1	0	0	0	0	1	0	0	0	7794	1145	40	1	847	1	INHA	2	220439988	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1504503	220439988	22759385	77	74570										
SLC16A14	0	genome.wustl.edu	37	chr2	230911111	230911111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	catccttctcttctgttcttCcctgctgtccagttgacttc	5	15	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	230911111	230911111	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	69_37n	-1	known	missense	c.731	p.G244E	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053	40	0	0	34	14	29.17	-	-	-	T	230911111	C	T	230911111	3	4	925	1	0	0	0	0	1	0	0	0	14496	855	30	2	809	2	SLC16A14	2	230911111	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	10471123	230911111	12288262	78	74571										
COL6A3	0	genome.wustl.edu	37	chr2	238280436	238280436	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgctctgaggtcagggtcgtGatgggcgtcagcagtttctg	16	8	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	238280436	238280436	G	T	SNP	COL6A3	ENST00000295550	human	ensembl	69_37n	-1	known	silent	c.4224	p.I1408	0.988	smart_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	34	0	0	20	5	20	-	-	-	T	238280436	G	T	238280436	2	4	925	1	0	0	0	0	0	0	0	1	3731	1280	45	2		2	COL6A3	2	238280436	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	7369325	238280436	4918937	79	74572										
MLPH	0	genome.wustl.edu	37	chr2	238436082	238436082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggccgatgtggacacctctGatgaggaaagcatccgggct	14	10	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	2	238436082	238436082	G	A	SNP	MLPH	ENST00000264605	human	ensembl	69_37n	1	known	missense	c.943	p.D315N	0.464	NULL	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MLPH	HGNC	ENSG00000115648	65	0	0	21	19	47.5	-	-	-	A	238436082	G	A	238436082	3	1	925	1	0	0	0	0	1	0	0	0	9704	1290	45	2	969	2	MLPH	2	238436082	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	155646	238436082	4763291	80	74573										
SRGAP3	0	genome.wustl.edu	37	chr3	9034672	9034672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttggaagaggccttgtcatCcagcaatggcccactgctgg	12	11	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	9034672	9034672	C	T	SNP	SRGAP3	ENST00000383836	human	ensembl	69_37n	-1	known	missense	c.2476	p.D826N	1.000	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220	42	0	0	38	8	17.39	-	-	-	T	9034672	C	T	9034672	3	4	925	1	0	0	0	0	1	0	0	0	15238	855	30	2	835	2	SRGAP3	3	9034672	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		9034672	188987758	81	74574										
TATDN2	0	genome.wustl.edu	37	chr3	10320626	10320626	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggccttgcatacggtccgaGagattgccagagtcaaagat	12	9	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	10320626	10320626	G	C	SNP	TATDN2	ENST00000287652	human	ensembl	69_37n	1	known	missense	c.2203	p.E735Q	1.000	pfam_TatD_superfamily	pfam_TatD_superfamily	-	no_errors	TATDN2	HGNC	ENSG00000157014	41	0	0	27	9	24.32	-	-	-	C	10320626	G	C	10320626	3	2	925	1	0	0	0	0	1	0	0	0	15684	943	33	2	2225	2	TATDN2	3	10320626	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1285954	10320626	187701804	82	74575										
OSBPL10	0	genome.wustl.edu	37	chr3	31725491	31725491	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	actcaacgaagcaaatgactCtctcctctggtgtggcccca	8	14	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	31725491	31725491	C	G	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	missense	c.1361	p.R454T	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	28	0	0	39	9	18.75	-	-	-	G	31725491	C	G	31725491	3	3	925	1	0	0	0	0	1	0	0	0	11348	913	32	2	953	2	OSBPL10	3	31725491	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	21404865	31725491	166296939	83	74576										
SCN5A	0	genome.wustl.edu	37	chr3	38627266	38627266	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccatgcagtcccacatggtCtcgatccactctccacagag	7	16	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	38627266	38627266	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	silent	c.2703	p.E901	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	73	0	0	48	18	26.87	-	-	-	T	38627266	C	T	38627266	2	4	925	1	0	0	0	0	0	0	0	1	14010	912	32	2		2	SCN5A	3	38627266	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6901775	38627266	159395164	84	74577										
PFKFB4	0	genome.wustl.edu	37	chr3	48557223	48557223	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caagggcttcctctggaggtCttgagatgtccacgttctgt	12	10	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	48557223	48557223	C	T	SNP	PFKFB4	ENST00000232375	human	ensembl	69_37n	-1	known	missense	c.1367	p.R456K	0.997	pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	43	0	0	34	13	27.66	-	-	-	T	48557223	C	T	48557223	3	4	925	1	0	0	0	0	1	0	0	0	11837	913	32	2	46	2	PFKFB4	3	48557223	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9929957	48557223	149465207	85	74578										
DOCK3	0	genome.wustl.edu	37	chr3	51392451	51392451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccatcctacagtgcgatgccCagtgtatcctttgatactgg	9	12	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	51392451	51392451	C	G	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	1	known	missense	c.4246	p.Q1416E	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	49	0	0	28	8	22.22	-	-	-	G	51392451	C	G	51392451	3	3	925	1	0	0	0	0	1	0	0	0	4723	595	21	4	4408	4	DOCK3	3	51392451	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2835228	51392451	146629979	86	74579										
LRTM1	0	genome.wustl.edu	37	chr3	54958790	54958790	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgctgaagctggttttgttGaaccgcaagtatagttaggt	12	6	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	54958790	54958790	G	A	SNP	LRTM1	ENST00000273286	human	ensembl	69_37n	-1	known	nonsense	c.460	p.Q154*	0.532	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	56	0	0	39	15	27.78	-	-	-	A	54958790	G	A	54958790	4	1	925	1	0	0	0	0	0	1	0	0	9110	1299	45	2	585	2	LRTM1	3	54958790	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3566339	54958790	143063640	87	74580										
ROBO2	0	genome.wustl.edu	37	chr3	77147253	77147253	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagggcgagcccacgactctGaactgcaaggcggagggccg	16	12	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	77147253	77147253	G	T	SNP	ROBO2	ENST00000461745	human	ensembl	69_37n	1	known	silent	c.150	p.L50	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO2	HGNC	ENSG00000185008	44	0	0	38	5	11.63	-	-	-	T	77147253	G	T	77147253	2	4	925	1	0	0	0	0	0	0	0	1	13600	1291	45	2		2	ROBO2	3	77147253	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	22188463	77147253	120875177	88	74581										
MYLK	0	genome.wustl.edu	37	chr3	123452940	123452940	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagggtggggagccacctctCtgggggctggagcagttctt	17	10	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	123452940	123452940	C	T	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	silent	c.903	p.Q301	0.017	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	48	0	0	29	15	34.09	-	-	-	T	123452940	C	T	123452940	2	4	925	1	0	0	0	0	0	0	0	1	10128	912	32	2		2	MYLK	3	123452940	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	46305687	123452940	74569490	89	74582										
XRN1	0	genome.wustl.edu	37	chr3	142123867	142123867	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgttggtttcttttcctctCttcctttttgagggagtggt	10	7	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	142123867	142123867	C	G	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	missense	c.1765	p.E589Q	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	79	0	0	76	30	28.3	-	-	-	G	142123867	C	G	142123867	3	3	925	1	0	0	0	0	1	0	0	0	17556	922	32	2	3463	2	XRN1	3	142123867	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18670927	142123867	55898563	90	74583										
PLCH1	0	genome.wustl.edu	37	chr3	155203309	155203309	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcttgtggcctcggacacaGaatcctttatctccaccatt	6	14	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	155203309	155203309	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.2834	p.S945F	0.012	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	90	0	0	59	25	29.76	-	-	-	A	155203309	G	A	155203309	3	1	925	1	0	0	0	0	1	0	0	0	12111	942	33	2	2270	2	PLCH1	3	155203309	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	13079442	155203309	42819121	91	74584										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	68	0	0	47	25	34.72	-	-	-	A	178928079	G	A	178928079	3	1	925	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	23724770	178928079	19094351	92	74585										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0	41	21	33.87	-	-	-	G	178952085	A	G	178952085	3	3	925	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-GM-A2D9-01A-11D-A18P-09	24006	178952085	19070345	93	74586										
YEATS2	0	genome.wustl.edu	37	chr3	183508693	183508693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccgtgggaacctgcaaggctGccacccccaccgtcgtcagc	11	18	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	183508693	183508693	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	69_37n	1	known	missense	c.3022	p.A1008T	0.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	55	0	0	40	12	23.08	-	-	-	A	183508693	G	A	183508693	3	1	925	1	0	0	0	0	1	0	0	0	17569	1319	46	4	3100	4	YEATS2	3	183508693	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4556608	183508693	14513737	94	74587										
AP2M1	0	genome.wustl.edu	37	chr3	183898502	183898502	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctccaggccctgccctttGgggcttataggggaaaatgg	13	10	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	183898502	183898502	G	C	SNP	AP2M1	ENST00000431779	human	ensembl	69_37n	1	novel	missense	c.493	p.G165R	0.000	NULL	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,prints_Clathrin_mu	-	no_stop_codon:bad_bp_length_for_coding_region	AP2M1	HGNC	ENSG00000161203	95	0	0	77	22	22.22	-	-	-	C	183898502	G	C	183898502	3	2	925	1	0	0	0	0	1	0	0	0	743	1363	47	4		4	AP2M1	3	183898502	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	389809	183898502	14123928	95	74588										
IGF2BP2	0	genome.wustl.edu	37	chr3	185369915	185369915	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccggtggcccggtgatgatGaccatcctttcgctgacgtc	12	13	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	185369915	185369915	G	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	69_37n	-1	known	silent	c.1428	p.V476	0.997	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792	61	0	0	57	20	25.97	-	-	-	T	185369915	G	T	185369915	2	4	925	1	0	0	0	0	0	0	0	1	7628	1277	45	2		2	IGF2BP2	3	185369915	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1471413	185369915	12652515	96	74589										
MUC4	0	genome.wustl.edu	37	chr3	195506620	195506620	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggtgtcacctgtggatgctGaggaagtgctggtgacagga	17	6	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	3	195506620	195506620	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	nonsense	c.11831	p.S3944*	0.742	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	52	0	0	27	27	50	-	-	-	C	195506620	G	C	195506620	4	2	925	1	0	0	0	0	0	1	0	0	10050	1294	45	2		2	MUC4	3	195506620	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	10136705	195506620	2515810	97	74590										
GAK	0	genome.wustl.edu	37	chr4	870398	870398	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aacatcttcatggatgccatCtgcaaagagagcaaacacga	8	10	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	870398	870398	C	T	SNP	GAK	ENST00000314167	human	ensembl	69_37n	-1	known	splice_site	c.1975-1	e18-1	1.000	-	-	-	no_errors	GAK	HGNC	ENSG00000178950	51	0	0	22	8	26.67	-	-	-	T	870398	C	T	870398	5	4	925	1	0	0	0	0	0	0	1	0	6245	927	32	2	2005	2	GAK	4	870398	Splice_Site	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		870398	190283878	98	74591										
LETM1	0	genome.wustl.edu	37	chr4	1823911	1823911	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agaacctgcctcattaccttCaagccctccagcaccggggc	8	17	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	1823911	1823911	C	G	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.1605	p.L535F	0.107	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	32	0	0	20	11	35.48	-	-	-	G	1823911	C	G	1823911	3	3	925	1	0	0	0	0	1	0	0	0	8788	825	29	2	634	2	LETM1	4	1823911	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	953513	1823911	189330365	99	74592										
MXD4	0	genome.wustl.edu	37	chr4	2259733	2259733	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcttttctagctcgttgtgtGaagacctgtttagaaagaca	10	7	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	2259733	2259733	G	A	SNP	MXD4	ENST00000337190	human	ensembl	69_37n	-1	known	missense	c.170	p.S57L	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD4	HGNC	ENSG00000123933	50	0	0	54	17	23.94	-	-	-	A	2259733	G	A	2259733	3	1	925	1	0	0	0	0	1	0	0	0	10073	1294	45	2	475	2	MXD4	4	2259733	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	435822	2259733	188894543	100	74593										
CNGA1	0	genome.wustl.edu	37	chr4	47938695	47938695	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtttagatccagtagaccatCtttcattaaaatctgcttcc	5	10	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	47938695	47938695	C	G	SNP	CNGA1	ENST00000402813	human	ensembl	69_37n	-1	known	missense	c.2023	p.D675H	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	43	0	0	30	5	14.29	-	-	-	G	47938695	C	G	47938695	3	3	925	1	0	0	0	0	1	0	0	0	3626	913	32	2	260	2	CNGA1	4	47938695	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	45678962	47938695	143215581	101	74594										
GSX2	0	genome.wustl.edu	37	chr4	54966574	54966574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acctcacggcctgcgccctcGctgcctgaaccgcaccccgg	10	21	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	54966574	54966574	G	A	SNP	GSX2	ENST00000326902	human	ensembl	69_37n	1	known	silent	c.63	p.S21	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	GSX2	HGNC	ENSG00000180613	24	0	0	18	9	33.33	-	-	-	A	54966574	G	A	54966574	2	1	925	1	0	0	0	0	0	0	0	1	6901	1074	38	1		1	GSX2	4	54966574	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	7027879	54966574	136187702	102	74595										
CEP135	0	genome.wustl.edu	37	chr4	56883842	56883842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcccatcatgcttatgaatCtcagatctcatcaatggcaa	6	11	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	56883842	56883842	C	G	SNP	CEP135	ENST00000257287	human	ensembl	69_37n	1	known	missense	c.2831	p.S944C	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CEP135	HGNC	ENSG00000174799	22	0	0	17	10	37.04	-	-	-	G	56883842	C	G	56883842	3	3	925	1	0	0	0	0	1	0	0	0	3276	913	32	2	2913	2	CEP135	4	56883842	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1917268	56883842	134270434	103	74596										
FRAS1	0	genome.wustl.edu	37	chr4	79366729	79366729	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tagaggcatcatttcctattCaagacgtcctggaaaactac	7	10	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	79366729	79366729	C	G	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	1	novel	nonsense	c.404	p.S135*	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	76	0	0	50	12	19.35	-	-	-	G	79366729	C	G	79366729	4	3	925	1	0	0	0	0	0	1	0	0	6090	827	29	2	5885	2	FRAS1	4	79366729	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	22482887	79366729	111787547	104	74597										
ARHGEF38	0	genome.wustl.edu	37	chr4	106510538	106510538	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagacagaaaaggattatctCaatgatctagagctgtgtgt	10	6	2	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	106510538	106510538	C	T	SNP	ARHGEF38	ENST00000265154	human	ensembl	69_37n	1	known	silent	c.330	p.L110	0.996	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	43	0	0	42	8	15.69	-	-	-	T	106510538	C	T	106510538	2	4	925	1	0	0	0	0	0	0	0	1	909	813	29	2		2	ARHGEF38	4	106510538	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	27143809	106510538	84643738	105	74598										
PDE5A	0	genome.wustl.edu	37	chr4	120473721	120473721	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttacctataactttattcttCtttccattttttataggtgt	3	7	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	120473721	120473721	C	T	SNP	PDE5A	ENST00000354960	human	ensembl	69_37n	-1	known	silent	c.1380	p.K460	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735	107	0	0	86	15	14.85	-	-	-	T	120473721	C	T	120473721	2	4	925	1	0	0	0	0	0	0	0	1	11717	912	32	2		2	PDE5A	4	120473721	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13963183	120473721	70680555	106	74599										
LARP1B	0	genome.wustl.edu	37	chr4	129003346	129003346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agcacaagtgggtaccactcCacttagatgttgtaagatca	9	9	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	129003346	129003346	C	T	SNP	LARP1B	ENST00000326639	human	ensembl	69_37n	1	known	missense	c.244	p.H82Y	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709	56	0	0	43	10	18.87	-	-	-	T	129003346	C	T	129003346	3	4	925	1	0	0	0	0	1	0	0	0	8683	594	21	4	254	4	LARP1B	4	129003346	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	8529625	129003346	62150930	107	74600										
SETD7	0	genome.wustl.edu	37	chr4	140432838	140432838	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacttttgctgggtggcctgGaaggccttcagctccacctg	12	13	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	140432838	140432838	G	A	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	silent	c.1080	p.F360	1.000	pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	21	0	0	15	4	21.05	-	-	-	A	140432838	G	A	140432838	2	1	925	1	0	0	0	0	0	0	0	1	14224	1165	41	2		2	SETD7	4	140432838	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	11429492	140432838	50721438	108	74601										
FBXW7	0	genome.wustl.edu	37	chr4	153251995	153251995	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggttttattacttttcttctCttgatgtgcaatggttcatc	7	7	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	153251995	153251995	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	silent	c.1011	p.K337	1.000	superfamily_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	145	0	0	166	55	24.89	-	-	-	T	153251995	C	T	153251995	2	4	925	1	0	0	0	0	0	0	0	1	5815	912	32	2		2	FBXW7	4	153251995	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12819157	153251995	37902281	109	74602										
WDR17	0	genome.wustl.edu	37	chr4	177032810	177032810	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgtatgtgctgccagtggaGacaggtttgcatattgtgcg	14	6	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	4	177032810	177032810	G	A	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.151	p.D51N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	78	0	0	40	21	33.33	-	-	-	A	177032810	G	A	177032810	3	1	925	1	0	0	0	0	1	0	0	0	17374	942	33	2	157	2	WDR17	4	177032810	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	23780815	177032810	14121466	110	74603										
C5orf42	0	genome.wustl.edu	37	chr5	37125442	37125442	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctttcttttcgttttcttttCatccaggcttgaatctctct	4	11	5	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	37125442	37125442	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.8700	p.M2900I	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	139	0	0	104	25	19.38	-	-	-	T	37125442	C	T	37125442	3	4	925	1	0	0	0	0	1	0	0	0	2322	826	29	2	921	2	C5orf42	5	37125442	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		37125442	143789818	111	74604										
RICTOR	0	genome.wustl.edu	37	chr5	38949951	38949951	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctttgttgctgtagtcttttCagtgtagcatagccaaaagc	9	8	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	38949951	38949951	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	69_37n	-1	known	silent	c.3999	p.L1333	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327	80	0	0	60	11	15.49	-	-	-	T	38949951	C	T	38949951	2	4	925	1	0	0	0	0	0	0	0	1	13442	813	29	2		2	RICTOR	5	38949951	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1824509	38949951	141965309	112	74605										
HEATR7B2	0	genome.wustl.edu	37	chr5	41057220	41057220	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gctggtcctacctagaatgaGaaaacagcttgaagctttca	9	9	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	41057220	41057220	G	C	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.910	p.L304V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	64	0	0	40	11	21.57	-	-	-	C	41057220	G	C	41057220	3	2	925	1	0	0	0	0	1	0	0	0	7086	942	33	2	3983	2	HEATR7B2	5	41057220	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2107269	41057220	139858040	113	74606										
DHX29	0	genome.wustl.edu	37	chr5	54579457	54579457	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggatcttcagagttttctctCttattttcagaatgctgttg	8	7	5	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	54579457	54579457	C	G	SNP	DHX29	ENST00000251636	human	ensembl	69_37n	-1	known	missense	c.1539	p.K513N	0.018	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248	153	0	0	131	39	22.94	-	-	-	G	54579457	C	G	54579457	3	3	925	1	0	0	0	0	1	0	0	0	4539	912	32	2	2638	2	DHX29	5	54579457	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13522237	54579457	126335803	114	74607										
ERBB2IP	0	genome.wustl.edu	37	chr5	65310496	65310496	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gattttttttttgtattgcaGattaactaaactccaaatat	4	5	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	65310496	65310496	G	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	1	known	splice_site	c.477-1	e5-1	1.000	-	-	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	41	0	0	38	10	20.83	-	-	-	C	65310496	G	C	65310496	5	2	925	1	0	0	0	0	0	0	1	0	5244	956	33	2	494	2	ERBB2IP	5	65310496	Splice_Site	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	10731039	65310496	115604764	115	74608										
MRPS27	0	genome.wustl.edu	37	chr5	71521974	71521974	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggtagcctggtttccatatCagaggcatgttgtggtacac	12	8	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	71521974	71521974	C	T	SNP	MRPS27	ENST00000513900	human	ensembl	69_37n	-1	known	silent	c.789	p.L263	0.993	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048	88	0	0	47	11	18.97	-	-	-	T	71521974	C	T	71521974	2	4	925	1	0	0	0	0	0	0	0	1	9910	813	29	2		2	MRPS27	5	71521974	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6211478	71521974	109393286	116	74609										
RHOBTB3	0	genome.wustl.edu	37	chr5	95128768	95128768	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttcttaaaacttcagtggaaGaacgcagttttgttgaaaag	9	5	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	95128768	95128768	G	A	SNP	RHOBTB3	ENST00000379982	human	ensembl	69_37n	1	known	missense	c.1726	p.E576K	1.000	NULL	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292	47	0	0	50	15	23.08	-	-	-	A	95128768	G	A	95128768	3	1	925	1	0	0	0	0	1	0	0	0	13419	943	33	2	1772	2	RHOBTB3	5	95128768	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	23606794	95128768	85786492	117	74610										
ST8SIA4	0	genome.wustl.edu	37	chr5	100238609	100238609	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcttttgtcttataaaagatCaggagcagacttattgtgca	8	6	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	100238609	100238609	C	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	69_37n	-1	known	silent	c.51	p.L17	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	109	1	0.91	72	26	26.53	-	-	-	T	100238609	C	T	100238609	2	4	925	1	0	0	0	0	0	0	0	1	15325	813	29	2		2	ST8SIA4	5	100238609	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5109841	100238609	80676651	118	74611										
HSD17B4	0	genome.wustl.edu	37	chr5	118835232	118835232	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agcagaaattcctggactttCaatcaactttgcaaaggtat	7	8	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	118835232	118835232	C	T	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	1	known	missense	c.1193	p.S398L	0.971	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	41	0	0	23	27	54	-	-	-	T	118835232	C	T	118835232	3	4	925	1	0	0	0	0	1	0	0	0	7437	838	29	2	1243	2	HSD17B4	5	118835232	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18596623	118835232	62080028	119	74612										
FSTL4	0	genome.wustl.edu	37	chr5	132535173	132535173	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcgccccgcactgtgatctCctgcacgtgcagccaggggc	12	17	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	132535173	132535173	C	G	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.2143	p.E715Q	0.907	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	49	0	0	45	13	22.41	-	-	-	G	132535173	C	G	132535173	3	3	925	1	0	0	0	0	1	0	0	0	6128	864	30	2	389	2	FSTL4	5	132535173	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13699941	132535173	48380087	120	74613										
SPOCK1	0	genome.wustl.edu	37	chr5	136320887	136320887	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttcatttcattctggcaaggGagacctaaaaaataatttct	6	7	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	136320887	136320887	G	A	SNP	SPOCK1	ENST00000282223	human	ensembl	69_37n	-1	known	silent	c.933	p.L311	1.000	superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377	108	0	0	73	31	29.81	-	-	-	A	136320887	G	A	136320887	2	1	925	1	0	0	0	0	0	0	0	1	15170	1161	41	2		2	SPOCK1	5	136320887	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3785714	136320887	44594373	121	74614										
FAM53C	0	genome.wustl.edu	37	chr5	137681206	137681206	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaagccgctcacagccttgtGatctggatgcccgcaaaact	10	13	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	137681206	137681206	G	A	SNP	FAM53C	ENST00000239906	human	ensembl	69_37n	1	known	missense	c.829	p.D277N	1.000	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	16	0	0	19	10	34.48	-	-	-	A	137681206	G	A	137681206	3	1	925	1	0	0	0	0	1	0	0	0	5627	1290	45	2	839	2	FAM53C	5	137681206	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1360319	137681206	43234054	122	74615										
SLC35A4	0	genome.wustl.edu	37	chr5	139947420	139947420	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cccctggcacttcagaacctCttcctctacacttttggtgt	6	15	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	139947420	139947420	C	G	SNP	SLC35A4	ENST00000323146	human	ensembl	69_37n	1	known	silent	c.666	p.L222	1.000	pfam_Nuc_sug_transpt,pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087	42	0	0	49	6	10.91	-	-	-	G	139947420	C	G	139947420	2	3	925	1	0	0	0	0	0	0	0	1	14662	900	32	2		2	SLC35A4	5	139947420	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2266214	139947420	40967840	123	74616										
PCDHGA2	0	genome.wustl.edu	37	chr5	140720804	140720804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcctgcagacctattcccacGaggtctccctcactgcggac	8	17	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	140720804	140720804	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	1	known	missense	c.2266	p.E756K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	65	0	0	41	15	26.79	-	-	-	A	140720804	G	A	140720804	3	1	925	1	0	0	0	0	1	0	0	0	11627	1059	37	1	2268	1	PCDHGA2	5	140720804	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	773384	140720804	40194456	124	74617										
PCDHGC3	0	genome.wustl.edu	37	chr5	140856824	140856824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcagtgtgactgacctggatGctggcgagaacgggctggtg	17	8	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	140856824	140856824	G	A	SNP	PCDHGC3	ENST00000308177	human	ensembl	69_37n	1	known	missense	c.1141	p.A381T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184	28	0	0	24	6	20	-	-	-	A	140856824	G	A	140856824	3	1	925	1	0	0	0	0	1	0	0	0	11642	1319	46	4	1143	4	PCDHGC3	5	140856824	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	136020	140856824	40058436	125	74618										
PDGFRB	0	genome.wustl.edu	37	chr5	149504344	149504344	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgagaatggctcaggccatGagccgtggcctccaccacct	11	15	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	149504344	149504344	G	A	SNP	PDGFRB	ENST00000261799	human	ensembl	69_37n	-1	known	missense	c.1858	p.H620Y	0.989	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_VEGFR_rcpt_N,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PDGFRB	HGNC	ENSG00000113721	16	0	0	16	12	42.86	-	-	-	A	149504344	G	A	149504344	3	1	925	1	0	0	0	0	1	0	0	0	11735	1290	45	2	1506	2	PDGFRB	5	149504344	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	8647520	149504344	31410916	126	74619										
RARS	0	genome.wustl.edu	37	chr5	167944845	167944845	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgcacgtctggccaatattGatgaagaaatgctccaaaaa	8	8	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	167944845	167944845	G	A	SNP	RARS	ENST00000231572	human	ensembl	69_37n	1	known	missense	c.1651	p.D551N	0.987	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd,tigrfam_Arg-tRNA-synth_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-synth_Ia	-	no_errors	RARS	HGNC	ENSG00000113643	37	0	0	30	8	21.05	-	-	-	A	167944845	G	A	167944845	3	1	925	1	0	0	0	0	1	0	0	0	13141	1290	45	2	1705	2	RARS	5	167944845	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	18440501	167944845	12970415	127	74620										
RGS14	0	genome.wustl.edu	37	chr5	176793213	176793213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cggggccccagggccagggcGagggccgcggcagctctctc	18	16	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	5	176793213	176793213	G	A	SNP	RGS14	ENST00000408923	human	ensembl	69_37n	1	known	missense	c.103	p.E35K	1.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS14	HGNC	ENSG00000169220	19	0	0	14	4	22.22	-	-	-	A	176793213	G	A	176793213	3	1	925	1	0	0	0	0	1	0	0	0	13381	1059	37	1	113	1	RGS14	5	176793213	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	8848368	176793213	4122047	128	74621										
EXOC2	0	genome.wustl.edu	37	chr6	572591	572591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggcagctggctcaagacgaGttttgtcaatttttcaacaa	9	8	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	572591	572591	G	A	SNP	EXOC2	ENST00000230449	human	ensembl	69_37n	-1	known	missense	c.1372	p.L458F	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685	62	0	0	17	12	41.38	-	-	-	A	572591	G	A	572591	3	1	925	1	0	0	0	0	1	0	0	0	5338	1029	36	4	1466	4	EXOC2	6	572591	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		572591	170542476	129	74622										
GPR116	0	genome.wustl.edu	37	chr6	46847672	46847672	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gatttccaactgctgttcttCatagcgccaagacacattgg	8	11	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	46847672	46847672	C	G	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	missense	c.919	p.E307Q	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	98	0	0	83	19	18.63	-	-	-	G	46847672	C	G	46847672	3	3	925	1	0	0	0	0	1	0	0	0	6683	835	29	2	3173	2	GPR116	6	46847672	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	46275081	46847672	124267395	130	74623										
MCM3	0	genome.wustl.edu	37	chr6	52133960	52133960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccacagtcttgctcatgcggGccttcgcatgggctgtggcc	13	14	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	52133960	52133960	G	A	SNP	MCM3	ENST00000229854	human	ensembl	69_37n	-1	known	missense	c.1892	p.A631V	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_3	-	no_errors	MCM3	HGNC	ENSG00000112118	55	0	0	33	17	34	-	-	-	A	52133960	G	A	52133960	3	1	925	1	0	0	0	0	1	0	0	0	9458	1203	42	4	554	4	MCM3	6	52133960	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5286288	52133960	118981107	131	74624										
MCM3	0	genome.wustl.edu	37	chr6	52134018	52134018	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagtgttcgggctgtaactgGagatgtctagggaagaaaag	15	5	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	52134018	52134018	G	C	SNP	MCM3	ENST00000229854	human	ensembl	69_37n	-1	known	missense	c.1834	p.P612A	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM_3	-	no_errors	MCM3	HGNC	ENSG00000112118	44	0	0	35	15	29.41	-	-	-	C	52134018	G	C	52134018	3	2	925	1	0	0	0	0	1	0	0	0	9458	1174	41	2	612	2	MCM3	6	52134018	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	58	52134018	118981049	132	74625										
TRAM2	0	genome.wustl.edu	37	chr6	52369549	52369549	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacaccagcagcagcacgcaGagcctgcagagcagggggtt	14	13	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	52369549	52369549	G	T	SNP	TRAM2	ENST00000182527	human	ensembl	69_37n	-1	known	silent	c.879	p.L293	0.111	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308	20	0	0	11	6	35.29	-	-	-	T	52369549	G	T	52369549	2	4	925	1	0	0	0	0	0	0	0	1	16549	929	33	2		2	TRAM2	6	52369549	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	235531	52369549	118745518	133	74626										
HTR1B	0	genome.wustl.edu	37	chr6	78172587	78172587	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagggcggcagcgagatagaGatggagaagacccacaccag	15	9	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	78172587	78172587	G	C	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	missense	c.534	p.I178M	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	21	0	0	22	9	29.03	-	-	-	C	78172587	G	C	78172587	3	2	925	1	0	0	0	0	1	0	0	0	7491	932	33	2	642	2	HTR1B	6	78172587	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	25803038	78172587	92942480	134	74627										
PTPRK	0	genome.wustl.edu	37	chr6	128302332	128302332	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taaaaaaggcagacatctgtCaggtggcagcatgtccatga	11	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	128302332	128302332	C	T	SNP	PTPRK	ENST00000368227	human	ensembl	69_37n	-1	known	missense	c.3691	p.D1231N	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	48	0	0	35	23	39.66	-	-	-	T	128302332	C	T	128302332	3	4	925	1	0	0	0	0	1	0	0	0	12888	826	29	2	706	2	PTPRK	6	128302332	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	50129745	128302332	42812735	135	74628										
EPB41L2	0	genome.wustl.edu	37	chr6	131188606	131188606	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agagcttttgtacctgtggaGactcatatgtgatggttttg	12	5	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	131188606	131188606	G	C	SNP	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	missense	c.2723	p.S908C	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	149	0	0	151	49	24.5	-	-	-	C	131188606	G	C	131188606	3	2	925	1	0	0	0	0	1	0	0	0	5190	942	33	2	310	2	EPB41L2	6	131188606	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2886274	131188606	39926461	136	74629										
PLEKHG1	0	genome.wustl.edu	37	chr6	151130863	151130863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaaccatgcagccaagattcCagctaaggtaggacactgaa	10	10	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	151130863	151130863	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	1	known	missense	c.1271	p.P424L	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	23	0	0	28	10	26.32	-	-	-	T	151130863	C	T	151130863	3	4	925	1	0	0	0	0	1	0	0	0	12142	594	21	4	1305	4	PLEKHG1	6	151130863	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	19942257	151130863	19984204	137	74630										
SYNE1	0	genome.wustl.edu	37	chr6	152674496	152674496	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgagtagagccataccaatCagaataggaactgagggatg	12	6	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	152674496	152674496	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.11155	p.D3719H	0.976	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	57	0	0	52	11	17.46	-	-	-	G	152674496	C	G	152674496	3	3	925	1	0	0	0	0	1	0	0	0	15537	826	29	2	15623	2	SYNE1	6	152674496	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1543633	152674496	18440571	138	74631										
TULP4	0	genome.wustl.edu	37	chr6	158923524	158923524	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccctgcagcagtgccaccctGaaccgcctgaccgtccctcg	9	20	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	158923524	158923524	G	T	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	1	known	silent	c.2829	p.L943	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	20	0	0	11	4	26.67	-	-	-	T	158923524	G	T	158923524	2	4	925	1	0	0	0	0	0	0	0	1	16873	1277	45	2		2	TULP4	6	158923524	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	6249028	158923524	12191543	139	74632										
FNDC1	0	genome.wustl.edu	37	chr6	159654134	159654134	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cccaccccagggttccctctCactctgattcccaccctaag	5	20	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	159654134	159654134	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	69_37n	1	known	missense	c.2590	p.H864Y	0.024	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	32	0	0	21	5	19.23	-	-	-	T	159654134	C	T	159654134	3	4	925	1	0	0	0	0	1	0	0	0	6014	826	29	2	2632	2	FNDC1	6	159654134	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	730610	159654134	11460933	140	74633										
RPS6KA2	0	genome.wustl.edu	37	chr6	166952216	166952216	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aactgggaaggatctgccttCtcaaagccctccttcacatg	8	13	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	6	166952216	166952216	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	silent	c.231	p.E77	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	55	0	0	63	17	21.25	-	-	-	T	166952216	C	T	166952216	2	4	925	1	0	0	0	0	0	0	0	1	13737	912	32	2		2	RPS6KA2	6	166952216	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7298082	166952216	4162851	141	74634										
MAD1L1	0	genome.wustl.edu	37	chr7	1855779	1855779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagggatgctgtcctggcgcCgcaggtgcacctcgatgagc	15	13	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	1855779	1855779	C	T	SNP	MAD1L1	ENST00000265854	human	ensembl	69_37n	-1	known	missense	c.2084	p.R695Q	0.958	pfam_MAD	pfam_MAD	-	no_errors	MAD1L1	HGNC	ENSG00000002822	26	0	0	17	4	19.05	-	-	-	T	1855779	C	T	1855779	3	4	925	1	0	0	0	0	1	0	0	0	9214	652	23	1	76	1	MAD1L1	7	1855779	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		1855779	157282884	142	74635										
GNA12	0	genome.wustl.edu	37	chr7	2770892	2770892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaacacgaagcggacgttctCggtgtcgatggcggtggtga	17	8	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	2770892	2770892	C	T	SNP	GNA12	ENST00000275364	human	ensembl	69_37n	-1	known	missense	c.1069	p.E357K	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha12	-	no_errors	GNA12	HGNC	ENSG00000146535	57	0	0	38	7	15.56	-	-	-	T	2770892	C	T	2770892	3	4	925	1	0	0	0	0	1	0	0	0	6552	893	31	1	80	1	GNA12	7	2770892	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	915113	2770892	156367771	143	74636										
ZNF12	0	genome.wustl.edu	37	chr7	6731836	6731836	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctggagaaaggctatttcaGatccattccacttatagggc	9	9	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	6731836	6731836	G	C	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	missense	c.737	p.S246C	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	42	0	0	47	9	16.07	-	-	-	C	6731836	G	C	6731836	3	2	925	1	0	0	0	0	1	0	0	0	17814	942	33	2	1360	2	ZNF12	7	6731836	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3960944	6731836	152406827	144	74637										
SP4	0	genome.wustl.edu	37	chr7	21521552	21521552	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttttgctagaggcagtaatGaaccaggaaaaaagaagcag	11	5	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	21521552	21521552	G	A	SNP	SP4	ENST00000222584	human	ensembl	69_37n	1	known	missense	c.1918	p.E640K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866	43	0	0	57	11	16.18	-	-	-	A	21521552	G	A	21521552	3	1	925	1	0	0	0	0	1	0	0	0	15055	1291	45	2	1936	2	SP4	7	21521552	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	14789716	21521552	137617111	145	74638										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26237349	26237349	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttacggaactgttccttttCtctctgcaaaggaaaatacc	6	11	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	26237349	26237349	C	T	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.46	p.E16K	1.000	NULL	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	63	0	0	53	12	18.46	-	-	-	T	26237349	C	T	26237349	3	4	925	1	0	0	0	0	1	0	0	0	7310	922	32	2	1051	2	HNRNPA2B1	7	26237349	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4715797	26237349	132901314	146	74639										
ANLN	0	genome.wustl.edu	37	chr7	36446159	36446159	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcgtctttggttaatgcctCaatttccagctctgtggtaa	9	9	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	36446159	36446159	C	G	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	nonsense	c.857	p.S286*	0.013	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	76	0	0	61	25	29.07	-	-	-	G	36446159	C	G	36446159	4	3	925	1	0	0	0	0	0	1	0	0	693	838	29	2	871	2	ANLN	7	36446159	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	10208810	36446159	122692504	147	74640										
BLVRA	0	genome.wustl.edu	37	chr7	43846647	43846647	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttaagcttccatttcaagtCtgggtccttggagaatgtgc	10	8	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	43846647	43846647	C	G	SNP	BLVRA	ENST00000265523	human	ensembl	69_37n	1	known	missense	c.704	p.S235C	1.000	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605	25	0	0	42	13	23.64	-	-	-	G	43846647	C	G	43846647	3	3	925	1	0	0	0	0	1	0	0	0	1456	913	32	2	730	2	BLVRA	7	43846647	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7400488	43846647	115292016	148	74641										
TNS3	0	genome.wustl.edu	37	chr7	47342615	47342615	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acatttgggaaggggatactGatggtgctcccgctgtgcgg	16	8	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	47342615	47342615	G	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.3390	p.I1130	0.999	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	18	0	0	16	9	36	-	-	-	A	47342615	G	A	47342615	2	1	925	1	0	0	0	0	0	0	0	1	16439	1280	45	2		2	TNS3	7	47342615	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3495968	47342615	111796048	149	74642										
ABCA13	0	genome.wustl.edu	37	chr7	48556398	48556398	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggctttcatttcctatgtctCactaaacttcatctttggcc	5	12	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	48556398	48556398	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	1	known	missense	c.13718	p.S4573L	0.989	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	117	0	0	84	21	20	-	-	-	T	48556398	C	T	48556398	3	4	925	1	0	0	0	0	1	0	0	0	31	838	29	2	13753	2	ABCA13	7	48556398	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1213783	48556398	110582265	150	74643										
HEPACAM2	0	genome.wustl.edu	37	chr7	92848495	92848495	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttcacgatgtaattgccttCatcagggaactgcagtgggt	11	9	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	92848495	92848495	C	T	SNP	HEPACAM2	ENST00000394468	human	ensembl	69_37n	-1	known	missense	c.349	p.E117K	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	56	0	0	52	17	24.64	-	-	-	T	92848495	C	T	92848495	3	4	925	1	0	0	0	0	1	0	0	0	7104	835	29	2	1075	2	HEPACAM2	7	92848495	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	44292097	92848495	66290168	151	74644										
LAMB4	0	genome.wustl.edu	37	chr7	107708601	107708601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agccctgggggtgacacttgCaggctgcaaggaacaatgga	15	9	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	107708601	107708601	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.2306	p.C769Y	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	30	0	0	12	12	50	-	-	-	T	107708601	C	T	107708601	3	4	925	1	0	0	0	0	1	0	0	0	8667	710	25	4	3043	4	LAMB4	7	107708601	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	14860106	107708601	51430062	152	74645										
NRCAM	0	genome.wustl.edu	37	chr7	107823305	107823305	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cattcatcatcaccatctttCtggcgccagctaactttgta	5	13	5	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	107823305	107823305	C	G	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	missense	c.2364	p.Q788H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	40	0	0	17	13	43.33	-	-	-	G	107823305	C	G	107823305	3	3	925	1	0	0	0	0	1	0	0	0	10717	912	32	2	1624	2	NRCAM	7	107823305	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	114704	107823305	51315358	153	74646										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138739960	138739960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaaccaagtaccttatatttCtttgaggataggaagcaaaa	7	6	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	138739960	138739960	C	G	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.2178	p.K726N	0.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	37	0	0	17	9	34.62	-	-	-	G	138739960	C	G	138739960	3	3	925	1	0	0	0	0	1	0	0	0	17671	912	32	2	546	2	ZC3HAV1	7	138739960	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	30916655	138739960	20398703	154	74647										
MGAM	0	genome.wustl.edu	37	chr7	141773951	141773951	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaagcaaaaggagaacttttCtgggatgatgggcaaacaaa	12	5	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	141773951	141773951	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	1	putative	silent	c.5256	p.F1752	1.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	47	0	0	24	7	22.58	-	-	-	T	141773951	C	T	141773951	2	4	925	1	0	0	0	0	0	0	0	1	9612	928	32	2		2	MGAM	7	141773951	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3033991	141773951	17364712	155	74648										
OR6B1	0	genome.wustl.edu	37	chr7	143701864	143701864	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccattattttcatgtatgctCgacctcgagttatccatgcc	6	12	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	143701864	143701864	C	T	SNP	OR6B1	ENST00000408922	human	ensembl	69_37n	1	known	nonsense	c.775	p.R259*	0.016	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6B1	HGNC	ENSG00000221813	93	0	0	30	19	38	-	-	-	T	143701864	C	T	143701864	4	4	925	1	0	0	0	0	0	1	0	0	11260	876	31	1	777	1	OR6B1	7	143701864	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1927913	143701864	15436799	156	74649										
ZNF777	0	genome.wustl.edu	37	chr7	149129739	149129739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcatgtgaagggccgctcgcCgcgccggttccgctgctgct	15	15	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	7	149129739	149129739	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	missense	c.1624	p.G542S	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	44	0	0	14	13	46.43	-	-	-	T	149129739	C	T	149129739	3	4	925	1	0	0	0	0	1	0	0	0	18243	652	23	1	875	1	ZNF777	7	149129739	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5427875	149129739	10008924	157	74650										
KIAA1967	0	genome.wustl.edu	37	chr8	22476366	22476366	+	Frame_Shift_Del	DEL	G	G	-													0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggacctgctgccccctcctGggaaaagcacgaagccaggt							TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	22476366	22476366	G	-	DEL	KIAA1967	ENST00000308511	human	ensembl	69_37n	1	known	frame_shift_del	c.2359	p.S789fs	0.998	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	KIAA1967	HGNC	ENSG00000158941	44	0	0	25	13	33.33	-	-	-	-	22476366	G	-	22476366	7	5	925	1	0	1	0	1	0	0	0	0	8317	1348	47	0	2429	0	KIAA1967	8	22476366	Frame_Shift_Del	DEL	G	TCGA-GM-A2D9-01A-11D-A18P-09		22476366	123887656	158	74651										
ANK1	0	genome.wustl.edu	37	chr8	41553930	41553930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgctatgatcctgctggccaGgccctcctcctcggccagtg	11	16	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	41553930	41553930	G	A	SNP	ANK1	ENST00000520299	human	ensembl	69_37n	-1	putative	missense	c.875	p.P292L	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ankyrin_rpt,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANK1	HGNC	ENSG00000029534	14	0	0	20	6	23.08	-	-	-	A	41553930	G	A	41553930	3	1	925	1	0	0	0	0	1	0	0	0	620	991	35	4	3128	4	ANK1	8	41553930	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	19077564	41553930	104810092	159	74652										
RP1	0	genome.wustl.edu	37	chr8	55540971	55540971	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttagaattgatagacatctCtagtaagaatattatggaag	8	3	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	55540971	55540971	C	G	SNP	RP1	ENST00000220676	human	ensembl	69_37n	1	known	missense	c.4529	p.S1510C	0.003	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	12	0	0	16	4	20	-	-	-	G	55540971	C	G	55540971	3	3	925	1	0	0	0	0	1	0	0	0	13618	913	32	2	4539	2	RP1	8	55540971	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13987041	55540971	90823051	160	74653										
RRS1	0	genome.wustl.edu	37	chr8	67341415	67341415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcgcaaaggcagagcaggacGaggcagagaagttgcaacgc	15	9	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	67341415	67341415	G	A	SNP	RRS1	ENST00000320270	human	ensembl	69_37n	1	known	missense	c.49	p.E17K	1.000	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041	26	0	0	17	4	19.05	-	-	-	A	67341415	G	A	67341415	3	1	925	1	0	0	0	0	1	0	0	0	13778	1059	37	1	51	1	RRS1	8	67341415	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	11800444	67341415	79022607	161	74654										
MSC	0	genome.wustl.edu	37	chr8	72754930	72754930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacatagtctgttggctgcgGaaacttctttggtgtcagag	12	8	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	72754930	72754930	G	A	SNP	MSC	ENST00000325509	human	ensembl	69_37n	-1	known	missense	c.587	p.S196F	0.770	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MSC	HGNC	ENSG00000178860	82	0	0	51	28	35.44	-	-	-	A	72754930	G	A	72754930	3	1	925	1	0	0	0	0	1	0	0	0	9940	1174	41	2	37	2	MSC	8	72754930	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5413515	72754930	73609092	162	74655										
NBN	0	genome.wustl.edu	37	chr8	90965489	90965489	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tacagatattttgctactttCtggtactgcttcatcactga	6	9	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	90965489	90965489	C	T	SNP	NBN	ENST00000265433	human	ensembl	69_37n	-1	known	missense	c.1828	p.E610K	0.245	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	189	0	0	154	47	23.38	-	-	-	T	90965489	C	T	90965489	3	4	925	1	0	0	0	0	1	0	0	0	10263	922	32	2	460	2	NBN	8	90965489	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	18210559	90965489	55398533	163	74656										
WDR67	0	genome.wustl.edu	37	chr8	124117616	124117616	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gatgaaagtaacatcagggaGagtacagcagccagcaaaat	11	7	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	124117616	124117616	G	A	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	1	known	missense	c.1121	p.R374K	0.178	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	77	0	0	42	21	32.81	-	-	-	A	124117616	G	A	124117616	3	1	925	1	0	0	0	0	1	0	0	0	17415	942	33	2	1151	2	WDR67	8	124117616	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	33152127	124117616	22246406	164	74657										
ATAD2	0	genome.wustl.edu	37	chr8	124358470	124358470	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatcctggttctcctactatCaatattcttggtcgaaaaga	6	9	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	124358470	124358470	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	silent	c.2388	p.L796	0.996	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	42	0	0	33	8	19.51	-	-	-	T	124358470	C	T	124358470	2	4	925	1	0	0	0	0	0	0	0	1	1075	825	29	2		2	ATAD2	8	124358470	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	240854	124358470	22005552	165	74658										
CYP11B1	0	genome.wustl.edu	37	chr8	143958628	143958628	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caatcggttgaagcgccattCaggcccattcctacagaggc	10	13	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	143958628	143958628	C	G	SNP	CYP11B1	ENST00000292427	human	ensembl	69_37n	-1	known	missense	c.406	p.E136Q	0.995	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	36	0	0	23	6	20.69	-	-	-	G	143958628	C	G	143958628	3	3	925	1	0	0	0	0	1	0	0	0	4176	835	29	2	1133	2	CYP11B1	8	143958628	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	19600158	143958628	2405394	166	74659										
CYP11B2	0	genome.wustl.edu	37	chr8	143994090	143994090	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggattataccgctcaggcctCgggaacaaggcggcattgcg	14	11	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	8	143994090	143994090	C	G	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	silent	c.1254	p.P418	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	65	0	0	54	6	10	-	-	-	G	143994090	C	G	143994090	2	3	925	1	0	0	0	0	0	0	0	1	4177	871	31	3		3	CYP11B2	8	143994090	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	35462	143994090	2369932	167	74660										
SMARCA2	0	genome.wustl.edu	37	chr9	2097429	2097429	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgaacactattatgcagttGagaaaaatctgcaaccaccc	6	10	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	2097429	2097429	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	1	known	silent	c.3036	p.L1012	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	60	0	0	40	15	27.27	-	-	-	A	2097429	G	A	2097429	2	1	925	1	0	0	0	0	0	0	0	1	14858	1281	45	2		2	SMARCA2	9	2097429	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		2097429	139116002	168	74661										
KDM4C	0	genome.wustl.edu	37	chr9	6984402	6984402	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atcagatcatatcaaactctCaggtgagaagatggttgatt	9	6	4	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	6984402	6984402	C	T	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	1	known	missense	c.1352	p.S451L	0.992	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	23	0	0	13	6	30	-	-	-	T	6984402	C	T	6984402	3	4	925	1	0	0	0	0	1	0	0	0	8184	838	29	2	1456	2	KDM4C	9	6984402	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4886973	6984402	134229029	169	74662										
MPDZ	0	genome.wustl.edu	37	chr9	13190232	13190232	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctgtactctgacccgcatCagtcatcgccagcactggat	8	14	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	13190232	13190232	C	G	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.2035	p.D679H	0.869	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	59	0	0	40	20	33.33	-	-	-	G	13190232	C	G	13190232	3	3	925	1	0	0	0	0	1	0	0	0	9794	826	29	2	4214	2	MPDZ	9	13190232	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6205830	13190232	128023199	170	74663										
FREM1	0	genome.wustl.edu	37	chr9	14857618	14857618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agatataatcaatgttgggtGaagggggatccagatgctga	14	4	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	14857618	14857618	G	A	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.761	p.S254L	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	83	0	0	71	11	13.41	-	-	-	A	14857618	G	A	14857618	3	1	925	1	0	0	0	0	1	0	0	0	6093	1294	45	2	5960	2	FREM1	9	14857618	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1667386	14857618	126355813	171	74664										
TEK	0	genome.wustl.edu	37	chr9	27209201	27209201	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggacaccatccaaacatcatCaatctcttaggagcatgtga	7	11	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	27209201	27209201	C	G	SNP	TEK	ENST00000380036	human	ensembl	69_37n	1	known	missense	c.2658	p.I886M	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	56	0	0	38	11	22.45	-	-	-	G	27209201	C	G	27209201	3	3	925	1	0	0	0	0	1	0	0	0	15846	816	29	2	2720	2	TEK	9	27209201	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12351583	27209201	114004230	172	74665										
OR13J1	0	genome.wustl.edu	37	chr9	35870329	35870329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagagggaagagcagatgctCcagggctgggtagccagaaa	16	8	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	35870329	35870329	C	T	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	0.072	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	33	0	0	32	8	20	-	-	-	T	35870329	C	T	35870329	3	4	925	1	0	0	0	0	1	0	0	0	11017	864	30	2	871	2	OR13J1	9	35870329	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	8661128	35870329	105343102	173	74666										
ACTL7A	0	genome.wustl.edu	37	chr9	111625619	111625619	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgggcctccacacccaaacCgtgtcctgccttaacaagtg	8	16	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	111625619	111625619	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	69_37n	1	known	silent	c.1017	p.T339	0.001	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7A	HGNC	ENSG00000187003	27	0	0	20	8	28.57	-	-	-	T	111625619	C	T	111625619	2	4	925	1	0	0	0	0	0	0	0	1	200	639	23	1		1	ACTL7A	9	111625619	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	75755290	111625619	29587812	174	74667										
CTNNAL1	0	genome.wustl.edu	37	chr9	111727666	111727666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acagtttctcacctcgtcttCcttcaaacacgtcattgatt	4	13	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	111727666	111727666	C	T	SNP	CTNNAL1	ENST00000325551	human	ensembl	69_37n	-1	known	missense	c.1583	p.G528E	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	104	0	0	93	17	15.45	-	-	-	T	111727666	C	T	111727666	3	4	925	1	0	0	0	0	1	0	0	0	4047	855	30	2	657	2	CTNNAL1	9	111727666	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	102047	111727666	29485765	175	74668										
NUP188	0	genome.wustl.edu	37	chr9	131765659	131765659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggaggcggaccacaccgtgGgttttattctgcagctctct	12	11	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	131765659	131765659	G	A	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	missense	c.4360	p.G1454S	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	69	0	0	39	13	25	-	-	-	A	131765659	G	A	131765659	3	1	925	1	0	0	0	0	1	0	0	0	10831	1232	43	4	4510	4	NUP188	9	131765659	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	20037993	131765659	9447772	176	74669										
SH3GLB2	0	genome.wustl.edu	37	chr9	131771580	131771580	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtgggtgaggtgctgctcagGggtggggaggcgggctctgt	23	6	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	131771580	131771580	G	C	SNP	SH3GLB2	ENST00000372554	human	ensembl	69_37n	-1	known	silent	c.912	p.P304	0.961	NULL	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341	23	0	0	10	5	33.33	-	-	-	C	131771580	G	C	131771580	2	2	925	1	0	0	0	0	0	0	0	1	14343	1219	43	4		4	SH3GLB2	9	131771580	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5921	131771580	9441851	177	74670										
C9orf96	0	genome.wustl.edu	37	chr9	136266896	136266896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	accacccggaagccaaggctCcctgcaaccaagccatcacc	7	19	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	9	136266896	136266896	C	T	SNP	C9orf96	ENST00000371957	human	ensembl	69_37n	1	known	missense	c.1228	p.P410S	0.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	35	0	0	30	7	18.92	-	-	-	T	136266896	C	T	136266896	3	4	925	1	0	0	0	0	1	0	0	0	2533	855	30	2	1278	2	C9orf96	9	136266896	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4495316	136266896	4946535	178	74671										
MCM10	0	genome.wustl.edu	37	chr10	13228241	13228241	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgggaacctgtaaagccaaGaagaagaatggagagccgtg	14	7	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	13228241	13228241	G	A	SNP	MCM10	ENST00000361282	human	ensembl	69_37n	1	known	silent	c.1179	p.K393	1.000	pfam_Znf_Mcm10/DnaG	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328	144	0	0	118	15	11.28	-	-	-	A	13228241	G	A	13228241	2	1	925	1	0	0	0	0	0	0	0	1	9456	933	33	2		2	MCM10	10	13228241	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		13228241	122306506	179	74672										
CACNB2	0	genome.wustl.edu	37	chr10	18690014	18690014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccaagggaggaaggctgaaGaattctgatatctgtgtaag	14	5	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	18690014	18690014	G	A	SNP	CACNB2	ENST00000377315	human	ensembl	69_37n	1	known	silent	c.54	p.K18	1.000	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	88	0	0	73	19	20.65	-	-	-	A	18690014	G	A	18690014	2	1	925	1	0	0	0	0	0	0	0	1	2578	933	33	2		2	CACNB2	10	18690014	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5461773	18690014	116844733	180	74673										
WAC	0	genome.wustl.edu	37	chr10	28905140	28905140	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acctggtcccaatcatacttCtaatagtagtaatgcatcaa	5	10	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	28905140	28905140	C	A	SNP	WAC	ENST00000354911	human	ensembl	69_37n	1	known	missense	c.1595	p.S532Y	1.000	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	WAC	HGNC	ENSG00000095787	50	0	0	19	13	40.62	-	-	-	A	28905140	C	A	28905140	3	1	925	1	0	0	0	0	1	0	0	0	17344	913	32	2	1641	2	WAC	10	28905140	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	10215126	28905140	106629607	181	74674										
CCDC7	0	genome.wustl.edu	37	chr10	32745230	32745230	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	attgttcgcaatttgcagctCagctagaagaagcacttaaa	8	8	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	32745230	32745230	C	T	SNP	CCDC7	ENST00000277657	human	ensembl	69_37n	1	known	nonsense	c.424	p.Q142*	0.969	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	49	0	0	57	18	24	-	-	-	T	32745230	C	T	32745230	4	4	925	1	0	0	0	0	0	1	0	0	2869	827	29	2	434	2	CCDC7	10	32745230	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3840090	32745230	102789517	182	74675										
RBP3	0	genome.wustl.edu	37	chr10	48390700	48390700	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtctgagatgctcagaatctCatggctcttgatggcctgct	11	10	4	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	48390700	48390700	C	T	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.178	p.E60K	1.000	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	20	0	0	21	8	27.59	-	-	-	T	48390700	C	T	48390700	3	4	925	1	0	0	0	0	1	0	0	0	13240	835	29	2	3581	2	RBP3	10	48390700	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	15645470	48390700	87144047	183	74676										
BICC1	0	genome.wustl.edu	37	chr10	60560726	60560726	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatgctggtgacttgaaacaGatgatgtgtccctccaaggt	11	8	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	60560726	60560726	G	C	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	1	known	missense	c.1935	p.Q645H	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	41	0	0	59	7	10.61	-	-	-	C	60560726	G	C	60560726	3	2	925	1	0	0	0	0	1	0	0	0	1432	933	33	2	1989	2	BICC1	10	60560726	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	12170026	60560726	74974021	184	74677										
MYOF	0	genome.wustl.edu	37	chr10	95129427	95129427	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagcaaagacggtgaaagttCcttctgcgaagctgttaaac	10	9	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	95129427	95129427	C	G	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.2564	p.G855A	1.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	37	0	0	43	14	24.56	-	-	-	G	95129427	C	G	95129427	3	3	925	1	0	0	0	0	1	0	0	0	10161	855	30	2	3741	2	MYOF	10	95129427	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	34568701	95129427	40405320	185	74678										
DNMBP	0	genome.wustl.edu	37	chr10	101646291	101646291	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtacagttatagaagtccagGagcttgtcaaagcgtttctg	11	7	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	101646291	101646291	G	C	SNP	DNMBP	ENST00000342239	human	ensembl	69_37n	-1	known	silent	c.3456	p.L1152	0.579	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,prints_p67phox,prints_Spectrin_alpha_SH3,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	DNMBP	HGNC	ENSG00000107554	33	0	0	46	11	19.3	-	-	-	C	101646291	G	C	101646291	2	2	925	1	0	0	0	0	0	0	0	1	4709	1161	41	2		2	DNMBP	10	101646291	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	6516864	101646291	33888456	186	74679										
HPS6	0	genome.wustl.edu	37	chr10	103827284	103827284	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgcccagcaccgccggcttGatgctcacctccccctcctt	7	20	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	103827284	103827284	G	C	SNP	HPS6	ENST00000299238	human	ensembl	69_37n	1	known	missense	c.2053	p.D685H	1.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189	25	0	0	31	7	18.42	-	-	-	C	103827284	G	C	103827284	3	2	925	1	0	0	0	0	1	0	0	0	7394	1290	45	2	2055	2	HPS6	10	103827284	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2180993	103827284	31707463	187	74680										
TAF5	0	genome.wustl.edu	37	chr10	105141539	105141539	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgctggaggttttgcagattCaactgtcagagtgtggtcgg	15	6	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	105141539	105141539	C	T	SNP	TAF5	ENST00000369839	human	ensembl	69_37n	1	known	missense	c.1475	p.S492L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	81	0	0	79	11	12.22	-	-	-	T	105141539	C	T	105141539	3	4	925	1	0	0	0	0	1	0	0	0	15620	838	29	2	1497	2	TAF5	10	105141539	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1314255	105141539	30393208	188	74681										
OBFC1	0	genome.wustl.edu	37	chr10	105658729	105658729	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcaagcatccttgcaatttGaatgttccacactgggtcgt	8	11	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	105658729	105658729	G	C	SNP	OBFC1	ENST00000224950	human	ensembl	69_37n	-1	known	missense	c.487	p.Q163E	0.973	pfam_DUF1879_CST_STN1,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	pfam_DUF1879_CST_STN1,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960	61	0	0	32	16	33.33	-	-	-	C	105658729	G	C	105658729	3	2	925	1	0	0	0	0	1	0	0	0	10880	1299	45	2	639	2	OBFC1	10	105658729	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	517190	105658729	29876018	189	74682										
ADRA2A	0	genome.wustl.edu	37	chr10	112838987	112838987	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttcttcttcacctacacgctCacggccgtcgggtgctccgt	9	16	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	112838987	112838987	C	T	SNP	ADRA2A	ENST00000280155	human	ensembl	69_37n	1	known	silent	c.1233	p.L411	0.963	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Adren_rcpt_A2A,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt,prints_Musac_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594	52	0	0	34	12	26.09	-	-	-	T	112838987	C	T	112838987	2	4	925	1	0	0	0	0	0	0	0	1	337	813	29	2		2	ADRA2A	10	112838987	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7180258	112838987	22695760	190	74683										
ATRNL1	0	genome.wustl.edu	37	chr10	117093823	117093823	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatggacatagcacttgcatCaataataatgtgtgcgaaca	8	7	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	117093823	117093823	C	G	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	1	known	missense	c.3069	p.I1023M	1.000	smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	69	0	0	59	19	24.36	-	-	-	G	117093823	C	G	117093823	3	3	925	1	0	0	0	0	1	0	0	0	1211	816	29	2	3143	2	ATRNL1	10	117093823	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4254836	117093823	18440924	191	74684										
MKI67	0	genome.wustl.edu	37	chr10	129911795	129911795	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	attaggaggcaagttttcatCaaatagttcaggtcttaggt	10	5	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	10	129911795	129911795	C	G	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	missense	c.1552	p.D518H	1.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	59	0	0	46	21	31.34	-	-	-	G	129911795	C	G	129911795	3	3	925	1	0	0	0	0	1	0	0	0	9669	826	29	2	8250	2	MKI67	10	129911795	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12817972	129911795	5622952	192	74685										
RIC8A	0	genome.wustl.edu	37	chr11	209670	209670	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcagcagccctgtggcacaGatgctggcagcagaggcccg	14	14	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	209670	209670	G	A	SNP	RIC8A	ENST00000527728	human	ensembl	69_37n	1	novel	missense	c.41	p.R14K	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RIC8A	HGNC	ENSG00000177963	35	0	0	35	6	14.63	-	-	-	A	209670	G	A	209670	3	1	925	1	0	0	0	0	1	0	0	0	13439	933	33	2	406	2	RIC8A	11	209670	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		209670	134796846	193	74686										
SLC25A22	0	genome.wustl.edu	37	chr11	792901	792901	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcatcctgcagctggatcttCagcatctccatgggcgtggt	12	12	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	792901	792901	C	T	SNP	SLC25A22	ENST00000320230	human	ensembl	69_37n	-1	known	silent	c.381	p.L127	0.997	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542	26	0	0	23	6	20.69	-	-	-	T	792901	C	T	792901	2	4	925	1	0	0	0	0	0	0	0	1	14574	813	29	2		2	SLC25A22	11	792901	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	583231	792901	134213615	194	74687										
DUSP8	0	genome.wustl.edu	37	chr11	1580209	1580209	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acaggcaggcagggctgggaGaggctcatgggtagcagggc	20	8	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	1580209	1580209	G	A	SNP	DUSP8	ENST00000331588	human	ensembl	69_37n	-1	known	silent	c.447	p.L149	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP8	HGNC	ENSG00000184545	52	0	0	35	11	23.91	-	-	-	A	1580209	G	A	1580209	2	1	925	1	0	0	0	0	0	0	0	1	4866	929	33	2		2	DUSP8	11	1580209	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	787308	1580209	133426307	195	74688										
TRPM5	0	genome.wustl.edu	37	chr11	2439589	2439589	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccacggccctggagatcctCtgagacggggagggagggga	18	10	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	2439589	2439589	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	splice_site	c.721-1	e6-1	0.980	-	-	-	no_errors	TRPM5	HGNC	ENSG00000070985	18	0	0	7	9	56.25	-	-	-	T	2439589	C	T	2439589	5	4	925	1	0	0	0	0	0	0	1	0	16685	927	32	2	2859	2	TRPM5	11	2439589	Splice_Site	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	859380	2439589	132566927	196	74689										
OR52K2	0	genome.wustl.edu	37	chr11	4471052	4471052	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtgacactaatgactccactCcccttcctgctgagatgttt	7	13	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	4471052	4471052	C	G	SNP	OR52K2	ENST00000325719	human	ensembl	69_37n	1	known	silent	c.483	p.L161	0.858	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963	119	0	0	119	34	22.22	-	-	-	G	4471052	C	G	4471052	2	3	925	1	0	0	0	0	0	0	0	1	11197	842	30	2		2	OR52K2	11	4471052	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2031463	4471052	130535464	197	74690										
HPX	0	genome.wustl.edu	37	chr11	6458804	6458804	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggcccagccatctcagggcaGaggagcagttcccaacagct	12	14	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	6458804	6458804	G	A	SNP	HPX	ENST00000265983	human	ensembl	69_37n	-1	known	missense	c.569	p.S190F	0.994	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169	30	0	0	17	5	22.73	-	-	-	A	6458804	G	A	6458804	3	1	925	1	0	0	0	0	1	0	0	0	7397	942	33	2	839	2	HPX	11	6458804	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1987752	6458804	128547712	198	74691										
OR10A6	0	genome.wustl.edu	37	chr11	7949369	7949369	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagattcagcagtggtgtcaGaagtgagtaagacaatgaca	12	6	2	5			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	7949369	7949369	G	A	SNP	OR10A6	ENST00000309838	human	ensembl	69_37n	-1	known	silent	c.841	p.L281	0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393	107	0	0	63	37	37	-	-	-	A	7949369	G	A	7949369	2	1	925	1	0	0	0	0	0	0	0	1	10967	933	33	2		2	OR10A6	11	7949369	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1490565	7949369	127057147	199	74692										
ST5	0	genome.wustl.edu	37	chr11	8752555	8752555	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taaccgaagctggcggtcttGaagggacaggtgggtgggga	19	6	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	8752555	8752555	G	C	SNP	ST5	ENST00000313726	human	ensembl	69_37n	-1	known	missense	c.282	p.F94L	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	45	0	0	26	5	16.13	-	-	-	C	8752555	G	C	8752555	3	2	925	1	0	0	0	0	1	0	0	0	15311	1281	45	2	3203	2	ST5	11	8752555	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	803186	8752555	126253961	200	74693										
CALCA	0	genome.wustl.edu	37	chr11	14989397	14989397	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caggctctcttctgggcaatGattctgatttgcaggatgga	12	8	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	14989397	14989397	G	A	SNP	CALCA	ENST00000359642	human	ensembl	69_37n	-1	known	missense	c.403	p.H135Y	1.000	NULL	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Procalcitonin_A-typ	-	no_errors	CALCA	HGNC	ENSG00000110680	48	0	0	41	10	19.61	-	-	-	A	14989397	G	A	14989397	3	1	925	1	0	0	0	0	1	0	0	0	2600	1280	45	2	159	2	CALCA	11	14989397	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	6236842	14989397	120017119	201	74694										
QSER1	0	genome.wustl.edu	37	chr11	32975639	32975639	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccatagaaggttttacagatGaggaggacacagaaagcgga	13	6	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	32975639	32975639	G	A	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	1	known	missense	c.4027	p.E1343K	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	54	0	0	40	20	33.33	-	-	-	A	32975639	G	A	32975639	3	1	925	1	0	0	0	0	1	0	0	0	12965	1291	45	2	4037	2	QSER1	11	32975639	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	17986242	32975639	102030877	202	74695										
DDB2	0	genome.wustl.edu	37	chr11	47256321	47256321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctgcagctttggaatctcaGaatgcacaaaaagaaagtga	9	7	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	47256321	47256321	G	A	SNP	DDB2	ENST00000256996	human	ensembl	69_37n	1	known	missense	c.716	p.R239K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574	32	0	0	29	11	27.5	-	-	-	A	47256321	G	A	47256321	3	1	925	1	0	0	0	0	1	0	0	0	4355	942	33	2	738	2	DDB2	11	47256321	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	14280682	47256321	87750195	203	74696										
NUP160	0	genome.wustl.edu	37	chr11	47834942	47834942	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acaaatgatccactaaggatGagggaataaggaaagacagg	12	5	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	47834942	47834942	G	A	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.1712	p.S571L	0.998	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	50	0	0	70	12	14.63	-	-	-	A	47834942	G	A	47834942	3	1	925	1	0	0	0	0	1	0	0	0	10830	1294	45	2	2690	2	NUP160	11	47834942	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	578621	47834942	87171574	204	74697										
FADS1	0	genome.wustl.edu	37	chr11	61580763	61580763	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctggagacagttctccaatCaggagagagttcatatactt	9	8	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	61580763	61580763	C	T	SNP	FADS1	ENST00000424501	human	ensembl	69_37n	-1	known	missense	c.280	p.D94N	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5,pfscan_Cyt_B5,prints_Cyt_B5	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FADS1	HGNC	ENSG00000149485	53	0	0	38	12	24	-	-	-	T	61580763	C	T	61580763	3	4	925	1	0	0	0	0	1	0	0	0	5405	813	29	2	1111	2	FADS1	11	61580763	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13745821	61580763	73425753	205	74698										
BEST1	0	genome.wustl.edu	37	chr11	61730178	61730178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaagttttgaattgctctcaGagagcgatggggccttgatg	13	6	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	61730178	61730178	G	A	SNP	BEST1	ENST00000449131	human	ensembl	69_37n	1	known	missense	c.1372	p.E458K	0.000	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	46	0	0	31	13	29.55	-	-	-	A	61730178	G	A	61730178	3	1	925	1	0	0	0	0	1	0	0	0	1408	943	33	2	1586	2	BEST1	11	61730178	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	149415	61730178	73276338	206	74699										
AHNAK	0	genome.wustl.edu	37	chr11	62300602	62300602	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	actttcatcttgggcacattCagtttgctcccaggcccctg	8	14	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	62300602	62300602	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.1287	p.L429	0.853	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	64	0	0	41	19	31.15	-	-	-	T	62300602	C	T	62300602	2	4	925	1	0	0	0	0	0	0	0	1	414	813	29	2		2	AHNAK	11	62300602	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	570424	62300602	72705914	207	74700										
EHD1	0	genome.wustl.edu	37	chr11	64627438	64627438	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atcaggtcattgagcttcctGagggcggcgtttcggggcag	16	9	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	64627438	64627438	G	A	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.873	p.L291	0.995	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	21	0	0	9	4	30.77	-	-	-	A	64627438	G	A	64627438	2	1	925	1	0	0	0	0	0	0	0	1	5012	1277	45	2		2	EHD1	11	64627438	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2326836	64627438	70379078	208	74701										
RAB1B	0	genome.wustl.edu	37	chr11	66043605	66043605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cgttcatgaccatggctgctGaaatcaaaaagcggatgggg	13	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	66043605	66043605	G	A	SNP	RAB1B	ENST00000311481	human	ensembl	69_37n	1	known	missense	c.502	p.E168K	1.000	pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903	56	0	0	20	18	47.37	-	-	-	A	66043605	G	A	66043605	3	1	925	1	0	0	0	0	1	0	0	0	12989	1291	45	2	524	2	RAB1B	11	66043605	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1416167	66043605	68962911	209	74702										
MRPL21	0	genome.wustl.edu	37	chr11	68664121	68664121	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccatactgccccgtgacgatCatctcattcaccttcttcac	4	17	5	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	68664121	68664121	C	T	SNP	MRPL21	ENST00000362034	human	ensembl	69_37n	-1	known	missense	c.258	p.M86I	0.996	NULL	pfam_Ribosomal_L21,tigrfam_Ribosomal_L21	-	no_errors	MRPL21	HGNC	ENSG00000197345	50	0	0	94	14	12.96	-	-	-	T	68664121	C	T	68664121	3	4	925	1	0	0	0	0	1	0	0	0	9859	826	29	2	375	2	MRPL21	11	68664121	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2620516	68664121	66342395	210	74703										
C2CD3	0	genome.wustl.edu	37	chr11	73789504	73789504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgtggccagcaagcagcacaCaatggatgggcagccacagc	13	12	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	73789504	73789504	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	missense	c.4259	p.C1420Y	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	45	0	0	43	13	23.21	-	-	-	T	73789504	C	T	73789504	3	4	925	1	0	0	0	0	1	0	0	0	2174	478	17	4	1668	4	C2CD3	11	73789504	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5125383	73789504	61217012	211	74704										
PRKRIR	0	genome.wustl.edu	37	chr11	76076976	76076976	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgatcaggtgttttatcttCtaagtctgctctcctacagt	7	10	5	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	76076976	76076976	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.130	p.E44K	1.000	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	90	0	0	79	26	24.76	-	-	-	T	76076976	C	T	76076976	3	4	925	1	0	0	0	0	1	0	0	0	12607	922	32	2	2171	2	PRKRIR	11	76076976	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2287472	76076976	58929540	212	74705										
KDELC2	0	genome.wustl.edu	37	chr11	108357153	108357153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttccggacactcacagtactCatggtacactggtcctaggg	10	12	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	108357153	108357153	C	G	SNP	KDELC2	ENST00000323468	human	ensembl	69_37n	-1	known	missense	c.415	p.E139Q	1.000	NULL	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC2	HGNC	ENSG00000178202	45	0	0	34	5	12.82	-	-	-	G	108357153	C	G	108357153	3	3	925	1	0	0	0	0	1	0	0	0	8172	835	29	2	1132	2	KDELC2	11	108357153	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	32280177	108357153	26649363	213	74706										
SIK3	0	genome.wustl.edu	37	chr11	116827733	116827733	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acttcccggaaaatcttcttCaagttttcttcatccagctg	5	12	5	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	11	116827733	116827733	C	T	SNP	SIK3	ENST00000445177	human	ensembl	69_37n	-1	novel	missense	c.301	p.E101K	0.993	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIK3	HGNC	ENSG00000160584	100	0	0	45	23	33.82	-	-	-	T	116827733	C	T	116827733	3	4	925	1	0	0	0	0	1	0	0	0	14408	825	29	2	3732	2	SIK3	11	116827733	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	8470580	116827733	18178783	214	74707										
TEAD4	0	genome.wustl.edu	37	chr12	3147214	3147214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tatgagagccccgagaacatGatcatcacctgctccacgaa	8	13	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	3147214	3147214	G	C	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	1	known	missense	c.978	p.M326I	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	32	0	0	23	11	32.35	-	-	-	C	3147214	G	C	3147214	3	2	925	1	0	0	0	0	1	0	0	0	15836	1290	45	2	1012	2	TEAD4	12	3147214	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		3147214	130704681	215	74708										
CHD4	0	genome.wustl.edu	37	chr12	6692483	6692483	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggtgccgcagcaatttctccCagtagtcaggatccacactt	9	13	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	6692483	6692483	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	nonsense	c.3941	p.W1314*	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	93	0	0	90	13	12.62	-	-	-	T	6692483	C	T	6692483	4	4	925	1	0	0	0	0	0	1	0	0	3356	595	21	4	1857	4	CHD4	12	6692483	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3545269	6692483	127159412	216	74709										
CD163L1	0	genome.wustl.edu	37	chr12	7527987	7527987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctaagcaatgaaacctgtgtCcccacacacgaacacttctt	5	14	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	7527987	7527987	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.2891	p.G964E	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	49	0	0	28	17	36.96	-	-	-	T	7527987	C	T	7527987	3	4	925	1	0	0	0	0	1	0	0	0	2997	855	30	2	1506	2	CD163L1	12	7527987	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	835504	7527987	126323908	217	74710										
ETV6	0	genome.wustl.edu	37	chr12	12037418	12037418	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttacgtctatcagttgctttCtgacagccggtacgaaaact	8	10	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	12037418	12037418	C	T	SNP	ETV6	ENST00000396373	human	ensembl	69_37n	1	known	missense	c.1049	p.S350F	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV6	HGNC	ENSG00000139083	86	0	0	57	21	26.92	-	-	-	T	12037418	C	T	12037418	3	4	925	1	0	0	0	0	1	0	0	0	5320	913	32	2	1071	2	ETV6	12	12037418	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4509431	12037418	121814477	218	74711										
ITPR2	0	genome.wustl.edu	37	chr12	26592094	26592094	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgccacttcatttcattgtaGagatcttctgtttgctggaa	8	8	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	26592094	26592094	G	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.6609	p.L2203	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	60	0	0	67	14	17.28	-	-	-	C	26592094	G	C	26592094	2	2	925	1	0	0	0	0	0	0	0	1	7975	929	33	2		2	ITPR2	12	26592094	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	14554676	26592094	107259801	219	74712										
SENP1	0	genome.wustl.edu	37	chr12	48439129	48439129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagagttttcggtggaggatCtcccagaccatccgcttccg	11	12	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	48439129	48439129	C	G	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.1911	p.E637D	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	71	0	0	53	24	31.17	-	-	-	G	48439129	C	G	48439129	3	3	925	1	0	0	0	0	1	0	0	0	14134	912	32	2	27	2	SENP1	12	48439129	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	21847035	48439129	85412766	220	74713										
MLL2	0	genome.wustl.edu	37	chr12	49436961	49436961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggatgccttcacgcccccatCctcaggtcctgtaaatgcca	8	16	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	49436961	49436961	C	T	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.5542	p.D1848N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	33	0	0	32	10	23.26	-	-	-	T	49436961	C	T	49436961	3	4	925	1	0	0	0	0	1	0	0	0	9692	855	30	2	11191	2	MLL2	12	49436961	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	997832	49436961	84414934	221	74714										
TUBA1A	0	genome.wustl.edu	37	chr12	49580117	49580117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgcgaattcggtccaacacGaggtcaatgatctccttgcc	9	12	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	49580117	49580117	G	C	SNP	TUBA1A	ENST00000546918	human	ensembl	69_37n	-1	putative	missense	c.503	p.S168W	0.013	NULL	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Alpha_tubulin	-	no_errors	TUBA1A	HGNC	ENSG00000167552	90	0	0	75	12	13.79	-	-	-	C	49580117	G	C	49580117	3	2	925	1	0	0	0	0	1	0	0	0	16840	1045	37	3	1012	3	TUBA1A	12	49580117	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	143156	49580117	84271778	222	74715										
EIF4B	0	genome.wustl.edu	37	chr12	53421804	53421804	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gggatatatttacaggctatGattcccggataggcagtggc	13	7	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	53421804	53421804	G	A	SNP	EIF4B	ENST00000262056	human	ensembl	69_37n	1	known	missense	c.811	p.D271N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4B	HGNC	ENSG00000063046	67	0	0	73	20	21.51	-	-	-	A	53421804	G	A	53421804	3	1	925	1	0	0	0	0	1	0	0	0	5064	1290	45	2	841	2	EIF4B	12	53421804	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3841687	53421804	80430091	223	74716										
HOXC11	0	genome.wustl.edu	37	chr12	54369062	54369062	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aacgtgtatatcaacaaagaGaagcggctgcagctgtcccg	11	10	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	54369062	54369062	G	A	SNP	HOXC11	ENST00000243082	human	ensembl	69_37n	1	novel	missense	c.784	p.E262K	1.000	NULL	pfam_DUF3528	-	no_errors	HOXC11	HGNC	ENSG00000123388	36	0	0	42	11	20.75	-	-	-	A	54369062	G	A	54369062	3	1	925	1	0	0	0	0	1	0	0	0	7361	933	33	2	786	2	HOXC11	12	54369062	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	947258	54369062	79482833	224	74717										
BLOC1S1	0	genome.wustl.edu	37	chr12	56112992	56112992	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atcggaatggtggagaacttCaaccaggcactcaaggtggg	14	8	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	56112992	56112992	C	T	SNP	BLOC1S1	ENST00000548925	human	ensembl	69_37n	1	known	silent	c.336	p.F112	1.000	pfam_GCN5L1	pfam_GCN5L1	-	no_errors	BLOC1S1	HGNC	ENSG00000135441	37	0	0	38	7	15.56	-	-	-	T	56112992	C	T	56112992	2	4	925	1	0	0	0	0	0	0	0	1	1453	825	29	2		2	BLOC1S1	12	56112992	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1743930	56112992	77738903	225	74718										
ERBB3	0	genome.wustl.edu	37	chr12	56488300	56488300	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctacaagtacccagatgttCagaatgaatgtcggccctgc	9	11	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	56488300	56488300	C	G	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1819	p.Q607E	0.694	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	21	0	0	22	11	33.33	-	-	-	G	56488300	C	G	56488300	3	3	925	1	0	0	0	0	1	0	0	0	5245	827	29	2	2008	2	ERBB3	12	56488300	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	375308	56488300	77363595	226	74719										
LRP1	0	genome.wustl.edu	37	chr12	57599457	57599457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cgcacaacacctgcaaggccGaaggtgccggagccaccaga	12	15	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	57599457	57599457	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	1	known	missense	c.11587	p.E3863K	0.998	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	36	0	0	40	5	10.87	-	-	-	A	57599457	G	A	57599457	3	1	925	1	0	0	0	0	1	0	0	0	9017	1059	37	1	11885	1	LRP1	12	57599457	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1111157	57599457	76252438	227	74720										
DYRK2	0	genome.wustl.edu	37	chr12	68050958	68050958	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcacggacagatccaggttCaacagttgtttgaggataac	10	9	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	68050958	68050958	C	G	SNP	DYRK2	ENST00000344096	human	ensembl	69_37n	1	known	missense	c.271	p.Q91E	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334	55	0	0	114	14	10.94	-	-	-	G	68050958	C	G	68050958	3	3	925	1	0	0	0	0	1	0	0	0	4891	827	29	2	281	2	DYRK2	12	68050958	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	10451501	68050958	65800937	228	74721										
SLC35E3	0	genome.wustl.edu	37	chr12	69145932	69145932	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctttgagccagtgtttggaGaaggaggaatatttggtccc	13	6	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	69145932	69145932	G	A	SNP	SLC35E3	ENST00000398004	human	ensembl	69_37n	1	known	missense	c.634	p.E212K	1.000	pfam_DUF250,pfam_DMT	pfam_DUF250,pfam_DMT	-	no_errors	SLC35E3	HGNC	ENSG00000175782	148	1	0.67	281	47	14.33	-	-	-	A	69145932	G	A	69145932	3	1	925	1	0	0	0	0	1	0	0	0	14675	943	33	2	644	2	SLC35E3	12	69145932	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1094974	69145932	64705963	229	74722										
CPSF6	0	genome.wustl.edu	37	chr12	69653949	69653949	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagattgccttcatggaattGagtccaagtcttatggttct	9	7	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	69653949	69653949	G	C	SNP	CPSF6	ENST00000266679	human	ensembl	69_37n	1	known	missense	c.1552	p.E518Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605	100	0	0	185	28	13.15	-	-	-	C	69653949	G	C	69653949	3	2	925	1	0	0	0	0	1	0	0	0	3859	1291	45	2	1471	2	CPSF6	12	69653949	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	508017	69653949	64197946	230	74723										
EEA1	0	genome.wustl.edu	37	chr12	93175878	93175878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atttctgtttgaaatcaagtCctcctgtgctagagaaagct	8	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	93175878	93175878	C	T	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.3184	p.D1062N	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	52	0	0	25	13	34.21	-	-	-	T	93175878	C	T	93175878	3	4	925	1	0	0	0	0	1	0	0	0	4956	855	30	2	1079	2	EEA1	12	93175878	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	23521929	93175878	40676017	231	74724										
MYO1H	0	genome.wustl.edu	37	chr12	109845625	109845625	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcccgttgacactagaactCtctgtctacgctagagatgc	9	12	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	109845625	109845625	C	G	SNP	MYO1H	ENST00000431443	human	ensembl	69_37n	1	known	silent	c.1014	p.L338	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527	56	0	0	16	16	50	-	-	-	G	109845625	C	G	109845625	2	3	925	1	0	0	0	0	0	0	0	1	10147	900	32	2		2	MYO1H	12	109845625	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	16669747	109845625	24006270	232	74725										
OAS3	0	genome.wustl.edu	37	chr12	113405314	113405314	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggcgagtactccacctgcttCacagagctacaacgggactt	10	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	113405314	113405314	C	T	SNP	OAS3	ENST00000546973	human	ensembl	69_37n	1	putative	missense	c.296	p.S99L	0.991	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OAS3	HGNC	ENSG00000111331	38	0	0	22	5	17.86	-	-	-	T	113405314	C	T	113405314	3	4	925	1	0	0	0	0	1	0	0	0	10874	825	29	2	2831	2	OAS3	12	113405314	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3559689	113405314	20446581	233	74726										
SUDS3	0	genome.wustl.edu	37	chr12	118841262	118841262	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcctgcaacacccgcggaatCtccagcccagaggttcgaag	11	15	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	118841262	118841262	C	T	SNP	SUDS3	ENST00000397564	human	ensembl	69_37n	1	known	missense	c.746	p.S249F	1.000	NULL	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707	55	0	0	39	14	26.42	-	-	-	T	118841262	C	T	118841262	3	4	925	1	0	0	0	0	1	0	0	0	15458	913	32	2	781	2	SUDS3	12	118841262	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5435948	118841262	15010633	234	74727										
P2RX4	0	genome.wustl.edu	37	chr12	121666825	121666825	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctggacagagccgcctccctCtgcttgcccaggtactcctt	9	17	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	121666825	121666825	C	G	SNP	P2RX4	ENST00000337233	human	ensembl	69_37n	1	known	silent	c.807	p.L269	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124	31	0	0	32	10	23.81	-	-	-	G	121666825	C	G	121666825	2	3	925	1	0	0	0	0	0	0	0	1	11415	900	32	2		2	P2RX4	12	121666825	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2825563	121666825	12185070	235	74728										
WDR66	0	genome.wustl.edu	37	chr12	122395093	122395093	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cataagaactctgtccttttCaaagaccccagcaactcctc	4	15	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	122395093	122395093	C	T	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	missense	c.1649	p.S550L	0.623	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	61	0	0	52	21	28.38	-	-	-	T	122395093	C	T	122395093	3	4	925	1	0	0	0	0	1	0	0	0	17414	838	29	2	1687	2	WDR66	12	122395093	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	728268	122395093	11456802	236	74729										
RSRC2	0	genome.wustl.edu	37	chr12	123001887	123001887	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgcttctggatctcgatttCttcctctctctgcttctgga	7	13	6	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	123001887	123001887	C	A	SNP	RSRC2	ENST00000331738	human	ensembl	69_37n	-1	known	missense	c.489	p.K163N	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011	118	0	0	93	22	19.13	-	-	-	A	123001887	C	A	123001887	3	1	925	1	0	0	0	0	1	0	0	0	13801	912	32	2	839	2	RSRC2	12	123001887	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	606794	123001887	10850008	237	74730										
MPHOSPH9	0	genome.wustl.edu	37	chr12	123645757	123645757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccgaatttttgctgtatattCaaaatcattcccctgtggag	7	9	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	123645757	123645757	C	G	SNP	MPHOSPH9	ENST00000541076	human	ensembl	69_37n	-1	known	missense	c.2851	p.E951Q	0.996	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825	60	0	0	68	13	16.05	-	-	-	G	123645757	C	G	123645757	3	3	925	1	0	0	0	0	1	0	0	0	9800	835	29	2	256	2	MPHOSPH9	12	123645757	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	643870	123645757	10206138	238	74731										
RILPL1	0	genome.wustl.edu	37	chr12	123957184	123957184	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcctggatgtgcacgtttctCtgtgtgttggccaggcgctt	13	10	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	123957184	123957184	C	T	SNP	RILPL1	ENST00000376874	human	ensembl	69_37n	-1	known	silent	c.1113	p.Q371	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026	95	0	0	84	26	23.64	-	-	-	T	123957184	C	T	123957184	2	4	925	1	0	0	0	0	0	0	0	1	13445	912	32	2		2	RILPL1	12	123957184	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	311427	123957184	9894711	239	74732										
NCOR2	0	genome.wustl.edu	37	chr12	124816953	124816953	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atggcggagttgctctcggtCagcttgctgaagaaggctgg	16	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	12	124816953	124816953	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	silent	c.6837	p.L2279	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	131	0	0	82	33	28.7	-	-	-	T	124816953	C	T	124816953	2	4	925	1	0	0	0	0	0	0	0	1	10308	813	29	2		2	NCOR2	12	124816953	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	859769	124816953	9034942	240	74733										
DGKH	0	genome.wustl.edu	37	chr13	42780232	42780232	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcatagccgtgttgaacattCccagctatgctggaggcact	11	11	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	42780232	42780232	C	G	SNP	DGKH	ENST00000337343	human	ensembl	69_37n	1	known	missense	c.2551	p.P851A	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780	68	0	0	56	12	17.65	-	-	-	G	42780232	C	G	42780232	3	3	925	1	0	0	0	0	1	0	0	0	4506	855	30	2	2633	2	DGKH	13	42780232	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		42780232	72389646	241	74734										
KCTD4	0	genome.wustl.edu	37	chr13	45768346	45768346	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acttcctctgccagtcccttGagctgaaagaattctgcttc	7	13	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	45768346	45768346	G	A	SNP	KCTD4	ENST00000379108	human	ensembl	69_37n	-1	known	silent	c.357	p.L119	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD4	HGNC	ENSG00000180332	56	0	0	45	12	21.05	-	-	-	A	45768346	G	A	45768346	2	1	925	1	0	0	0	0	0	0	0	1	8165	1277	45	2		2	KCTD4	13	45768346	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2988114	45768346	69401532	242	74735										
THSD1	0	genome.wustl.edu	37	chr13	52951842	52951842	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccgacgagctctgtggggctCtgttctctcaattccggcca	11	14	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	52951842	52951842	C	T	SNP	THSD1	ENST00000258613	human	ensembl	69_37n	-1	known	missense	c.2263	p.E755K	0.999	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114	73	0	0	49	11	18.33	-	-	-	T	52951842	C	T	52951842	3	4	925	1	0	0	0	0	1	0	0	0	15972	922	32	2	299	2	THSD1	13	52951842	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7183496	52951842	62218036	243	74736										
SLITRK5	0	genome.wustl.edu	37	chr13	88329126	88329126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccagtacaatctcatccgcGagattcagtctggaactttt	7	11	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	88329126	88329126	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	69_37n	1	known	missense	c.1483	p.E495K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	32	0	0	18	6	25	-	-	-	A	88329126	G	A	88329126	3	1	925	1	0	0	0	0	1	0	0	0	14835	1059	37	1	1485	1	SLITRK5	13	88329126	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	35377284	88329126	26840752	244	74737										
NALCN	0	genome.wustl.edu	37	chr13	101735225	101735225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggtacggtcaccgggtcctCgacgtcccactgcaacagaa	11	14	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	101735225	101735225	C	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	missense	c.3700	p.E1234K	0.948	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	40	0	0	26	17	39.53	-	-	-	T	101735225	C	T	101735225	3	4	925	1	0	0	0	0	1	0	0	0	10220	893	31	1	1564	1	NALCN	13	101735225	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13406099	101735225	13434653	245	74738										
TPP2	0	genome.wustl.edu	37	chr13	103299647	103299647	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccaactgtggattatttttGaccagaacaaaagacagatg	9	7	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	13	103299647	103299647	G	A	SNP	TPP2	ENST00000376065	human	ensembl	69_37n	1	known	missense	c.2581	p.D861N	1.000	pfam_Peptidase_S8A_TPPII	pfam_Peptidase_S8/S53,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900	62	0	0	58	17	22.67	-	-	-	A	103299647	G	A	103299647	3	1	925	1	0	0	0	0	1	0	0	0	16508	1290	45	2	2663	2	TPP2	13	103299647	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1564422	103299647	11870231	246	74739										
SUPT16H	0	genome.wustl.edu	37	chr14	21838537	21838537	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggcagtcattccagctcttCatgaactctccagggaattt	8	11	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	21838537	21838537	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.441	p.M147I	1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	159	1	0.62	96	35	26.72	-	-	-	T	21838537	C	T	21838537	3	4	925	1	0	0	0	0	1	0	0	0	15487	826	29	2	2794	2	SUPT16H	14	21838537	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		21838537	85511003	247	74740										
AKAP6	0	genome.wustl.edu	37	chr14	33242956	33242956	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gactatgccagcatcttttgGatgaccgggagacttgcaat	11	9	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	33242956	33242956	G	C	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.3445	p.D1149H	1.000	smart_Spectrin/alpha-actinin	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	51	0	0	34	13	27.66	-	-	-	C	33242956	G	C	33242956	3	2	925	1	0	0	0	0	1	0	0	0	455	1174	41	2	3487	2	AKAP6	14	33242956	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	11404419	33242956	74106584	248	74741										
EAPP	0	genome.wustl.edu	37	chr14	34985728	34985728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggctttatatcttagaacctCctctttgttaatagaacaat	5	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	34985728	34985728	C	T	SNP	EAPP	ENST00000250454	human	ensembl	69_37n	-1	known	missense	c.646	p.E216K	1.000	pfam_E2F-assoc_phosphoprotein	pfam_E2F-assoc_phosphoprotein	-	no_errors	EAPP	HGNC	ENSG00000129518	82	0	0	66	19	22.35	-	-	-	T	34985728	C	T	34985728	3	4	925	1	0	0	0	0	1	0	0	0	4912	864	30	2	215	2	EAPP	14	34985728	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1742772	34985728	72363812	249	74742										
DHRS7	0	genome.wustl.edu	37	chr14	60616170	60616170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacaaatatgttactaacaaGaaaggttgttctgagatcca	7	7	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	60616170	60616170	G	A	SNP	DHRS7	ENST00000554101	human	ensembl	69_37n	-1	putative	missense	c.857	p.S286F	0.111	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHRS7	HGNC	ENSG00000100612	71	0	0	32	42	56.76	-	-	-	A	60616170	G	A	60616170	3	1	925	1	0	0	0	0	1	0	0	0	4531	933	33	2	154	2	DHRS7	14	60616170	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	25630442	60616170	46733370	250	74743										
ZFYVE26	0	genome.wustl.edu	37	chr14	68229058	68229058	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcccgtgcagcagtgaggttCccggctttgaggcaggccat	14	12	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	68229058	68229058	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	69_37n	-1	known	silent	c.6231	p.G2077	0.987	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	56	0	0	25	10	27.78	-	-	-	T	68229058	C	T	68229058	2	4	925	1	0	0	0	0	0	0	0	1	17764	842	30	2		2	ZFYVE26	14	68229058	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7612888	68229058	39120482	251	74744										
ZC3H14	0	genome.wustl.edu	37	chr14	89077251	89077251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caccattaatgtcccaccacGacatgccttgaaatggattc	6	13	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	89077251	89077251	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	69_37n	1	known	missense	c.2171	p.R724Q	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	109	0	0	84	34	28.81	-	-	-	A	89077251	G	A	89077251	3	1	925	1	0	0	0	0	1	0	0	0	17662	1058	37	1	2622	1	ZC3H14	14	89077251	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	20848193	89077251	18272289	252	74745										
CDC42BPB	0	genome.wustl.edu	37	chr14	103412947	103412947	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agaatcccaacccacttcctCttttcattctcattttctgt	2	14	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	103412947	103412947	C	G	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	missense	c.3606	p.K1202N	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	44	0	0	37	12	24.49	-	-	-	G	103412947	C	G	103412947	3	3	925	1	0	0	0	0	1	0	0	0	3102	912	32	2	1569	2	CDC42BPB	14	103412947	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	14335696	103412947	3936593	253	74746										
ASPG	0	genome.wustl.edu	37	chr14	104578858	104578858	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcaggagccctcatgttttCaggaagtgctgcctggtgtc	12	11	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	104578858	104578858	C	A	SNP	ASPG	ENST00000455920	human	ensembl	69_37n	1	known	missense	c.1717	p.Q573K	0.519	NULL	pfam_Asparaginase/glutaminase,pfam_Ankyrin_rpt,superfamily_Asparaginase/glutaminase,superfamily_Ankyrin_rpt-contain_dom,smart_Asparaginase/glutaminase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Asparaginase/glutaminase,prints_Ankyrin_rpt,tigrfam_AsnASEI	-	no_errors	ASPG	HGNC	ENSG00000166183	84	0	0	73	19	20.65	-	-	-	A	104578858	C	A	104578858	3	1	925	1	0	0	0	0	1	0	0	0	1056	827	29	2	1779	2	ASPG	14	104578858	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1165911	104578858	2770682	254	74747										
TMEM179	0	genome.wustl.edu	37	chr14	105070949	105070949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggcgctcagccacatgccctCggtgaagagcaggcagcggc	15	14	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	105070949	105070949	C	T	SNP	TMEM179	ENST00000556573	human	ensembl	69_37n	-1	known	missense	c.130	p.E44K	1.000	NULL	NULL	-	no_errors	TMEM179	HGNC	ENSG00000258986	19	0	0	12	8	38.1	-	-	-	T	105070949	C	T	105070949	3	4	925	1	0	0	0	0	1	0	0	0	16191	893	31	1	475	1	TMEM179	14	105070949	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	492091	105070949	2278591	255	74748										
BTBD6	0	genome.wustl.edu	37	chr14	105716582	105716582	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtgccaccgattccagtcttCtgcctaccgcagcaaccagt	8	16	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	14	105716582	105716582	C	T	SNP	BTBD6	ENST00000392554	human	ensembl	69_37n	1	known	missense	c.1031	p.S344F	0.994	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887	15	0	0	11	6	35.29	-	-	-	T	105716582	C	T	105716582	3	4	925	1	0	0	0	0	1	0	0	0	1554	913	32	2	1045	2	BTBD6	14	105716582	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	645633	105716582	1632958	256	74749										
TUBGCP5	0	genome.wustl.edu	37	chr15	22866752	22866752	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaaaatgttgacacagctaaGaagaagctgcctgttcatat	9	7	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	22866752	22866752	G	A	SNP	TUBGCP5	ENST00000561214	human	ensembl	69_37n	1	novel	missense	c.328	p.E110K	1.000	pfam_Spc97_Spc98	pfam_Spc97_Spc98	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TUBGCP5	HGNC	ENSG00000153575	94	0	0	59	28	32.18	-	-	-	A	22866752	G	A	22866752	3	1	925	1	0	0	0	0	1	0	0	0	16866	933	33	2	2430	2	TUBGCP5	15	22866752	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		22866752	79664640	257	74750										
CYFIP1	0	genome.wustl.edu	37	chr15	22963843	22963843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctagaactggcgattggacGatttgaaagtgaagatttga	12	5	0	5			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	22963843	22963843	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	1	known	missense	c.2357	p.R786Q	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	48	0	0	59	7	10.61	-	-	-	A	22963843	G	A	22963843	3	1	925	1	0	0	0	0	1	0	0	0	4168	1058	37	1	2816	1	CYFIP1	15	22963843	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	97091	22963843	79567549	258	74751										
ATP10A	0	genome.wustl.edu	37	chr15	25932865	25932865	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctactgtgtttttgtagaaGaagtacagcaccatgttggc	10	8	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	25932865	25932865	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	silent	c.3276	p.F1092	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	68	0	0	47	11	18.97	-	-	-	A	25932865	G	A	25932865	2	1	925	1	0	0	0	0	0	0	0	1	1120	933	33	2		2	ATP10A	15	25932865	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2969022	25932865	76598527	259	74752										
HERC2	0	genome.wustl.edu	37	chr15	28441424	28441424	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttggtcttgaaacacgtttCacaaaaatcaaagtcatcac	5	9	5	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	28441424	28441424	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.8197	p.E2733K	1.000	pfam_Znf_ZZ,superfamily_Galactose-bd-like,smart_Znf_ZZ,pfscan_Znf_ZZ	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	40	0	0	41	6	12.77	-	-	-	T	28441424	C	T	28441424	3	4	925	1	0	0	0	0	1	0	0	0	7109	835	29	2	6475	2	HERC2	15	28441424	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2508559	28441424	74089968	260	74753										
EIF2AK4	0	genome.wustl.edu	37	chr15	40259885	40259885	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctaagcgcctcgcagacaTttgcaaggaggatgtgtttg	12	8	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	40259885	40259885	T	G	SNP	EIF2AK4	ENST00000263791	human	ensembl	69_37n	1	known	missense	c.1358	p.I453S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829	57	0	0	38	21	35.59	-	-	-	G	40259885	T	G	40259885	3	3	925	1	0	0	0	0	1	0	0	0	5034	1493	52	5	1392	5	EIF2AK4	15	40259885	Missense_Mutation	SNP	T	TCGA-GM-A2D9-01A-11D-A18P-09	11818461	40259885	62271507	261	74754										
NDUFAF1	0	genome.wustl.edu	37	chr15	41687186	41687186	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cgaccatccccacgtacacgGagatacagagtattgaactg	9	12	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	41687186	41687186	G	C	SNP	NDUFAF1	ENST00000260361	human	ensembl	69_37n	-1	known	silent	c.630	p.L210	1.000	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	71	0	0	63	8	11.11	-	-	-	C	41687186	G	C	41687186	2	2	925	1	0	0	0	0	0	0	0	1	10346	1161	41	2		2	NDUFAF1	15	41687186	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1427301	41687186	60844206	262	74755										
PLA2G4F	0	genome.wustl.edu	37	chr15	42445858	42445858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacctgcagctcttgtgaatCctacatggagggggagggag	15	9	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	42445858	42445858	C	T	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.451	p.D151N	0.988	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	30	0	0	25	11	30.56	-	-	-	T	42445858	C	T	42445858	3	4	925	1	0	0	0	0	1	0	0	0	12080	869	30	2	2162	2	PLA2G4F	15	42445858	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	758672	42445858	60085534	263	74756										
MAP1A	0	genome.wustl.edu	37	chr15	43814005	43814005	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagtggcagagctagaggagGagcagtcccagggctctagc	16	9	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	43814005	43814005	G	C	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	missense	c.334	p.E112Q	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	115	0	0	63	23	26.74	-	-	-	C	43814005	G	C	43814005	3	2	925	1	0	0	0	0	1	0	0	0	9298	1175	41	2	336	2	MAP1A	15	43814005	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1368147	43814005	58717387	264	74757										
USP8	0	genome.wustl.edu	37	chr15	50786430	50786430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acagtcagcaagattcacaaGaattgcttctgttcctaatg	7	9	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	50786430	50786430	G	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.2611	p.E871Q	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	41	0	0	28	14	33.33	-	-	-	C	50786430	G	C	50786430	3	2	925	1	0	0	0	0	1	0	0	0	17186	943	33	2	2669	2	USP8	15	50786430	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	6972425	50786430	51744962	265	74758										
DYX1C1	0	genome.wustl.edu	37	chr15	55710321	55710321	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gacattcaatgccctcaagaGaacagaattcctgaaaaagg	8	9	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	55710321	55710321	G	C	SNP	DYX1C1	ENST00000380679	human	ensembl	69_37n	-1	known	missense	c.1058	p.S353C	0.001	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	DYX1C1	HGNC	ENSG00000256061	28	0	0	27	9	25	-	-	-	C	55710321	G	C	55710321	3	2	925	1	0	0	0	0	1	0	0	0	4897	942	33	2	91	2	DYX1C1	15	55710321	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4923891	55710321	46821071	266	74759										
IGDCC4	0	genome.wustl.edu	37	chr15	65676706	65676706	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtcagagtggacaatgacttCagcctccacctggttcctgc	10	13	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	65676706	65676706	C	A	SNP	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	nonsense	c.3394	p.E1132*	0.978	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	27	0	0	17	6	26.09	-	-	-	A	65676706	C	A	65676706	4	1	925	1	0	0	0	0	0	1	0	0	7623	835	29	2	362	2	IGDCC4	15	65676706	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9966385	65676706	36854686	267	74760										
FES	0	genome.wustl.edu	37	chr15	91432751	91432751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gcgctgtcccccacaggtccGcacctgacgtcccaccctgt	9	20	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	91432751	91432751	G	A	SNP	FES	ENST00000328850	human	ensembl	69_37n	1	known	missense	c.811	p.A271T	0.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom	-	no_errors	FES	HGNC	ENSG00000182511	21	0	0	16	6	27.27	-	-	-	A	91432751	G	A	91432751	3	1	925	1	0	0	0	0	1	0	0	0	5866	1087	38	1	833	1	FES	15	91432751	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	25756045	91432751	11098641	268	74761										
HDDC3	0	genome.wustl.edu	37	chr15	91475126	91475126	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cccaaagtgtagctccacctCatccagggtggtgtctgtgt	11	12	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	91475126	91475126	C	T	SNP	HDDC3	ENST00000394272	human	ensembl	69_37n	-1	known	missense	c.217	p.E73K	1.000	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC3	HGNC	ENSG00000184508	54	0	0	50	13	20.63	-	-	-	T	91475126	C	T	91475126	3	4	925	1	0	0	0	0	1	0	0	0	7068	835	29	2	213	2	HDDC3	15	91475126	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	42375	91475126	11056266	269	74762										
SV2B	0	genome.wustl.edu	37	chr15	91769875	91769875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccgatggggtggaagtgttcGtggtgagttttgccctgccc	16	9	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	91769875	91769875	G	A	SNP	SV2B	ENST00000330276	human	ensembl	69_37n	1	known	missense	c.382	p.V128M	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2_chordata	-	no_errors	SV2B	HGNC	ENSG00000185518	64	0	0	59	11	15.71	-	-	-	A	91769875	G	A	91769875	3	1	925	1	0	0	0	0	1	0	0	0	15509	1145	40	1	384	1	SV2B	15	91769875	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	294749	91769875	10761517	270	74763										
MCTP2	0	genome.wustl.edu	37	chr15	95013628	95013628	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	attctggcagcagccaccatCattttgtatttcattccact	5	12	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	15	95013628	95013628	C	T	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	silent	c.2427	p.I809	0.062	pfam_PRibTrfase_C	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	169	0	0	139	52	27.23	-	-	-	T	95013628	C	T	95013628	2	4	925	1	0	0	0	0	0	0	0	1	9472	816	29	2		2	MCTP2	15	95013628	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3243753	95013628	7517764	271	74764										
CRAMP1L	0	genome.wustl.edu	37	chr16	1705223	1705223	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtctgtcgtctccgtaggatGatcgtggagctacatcgaaa	12	9	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	1705223	1705223	G	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	69_37n	1	known	missense	c.1041	p.M347I	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545	68	0	0	59	13	18.06	-	-	-	T	1705223	G	T	1705223	3	4	925	1	0	0	0	0	1	0	0	0	3876	1290	45	2	1071	2	CRAMP1L	16	1705223	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		1705223	88649530	272	74765										
C16orf45	0	genome.wustl.edu	37	chr16	15675102	15675102	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaaaccaaactgcagaagcaGagagaggatgagctaatcca	10	8	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	15675102	15675102	G	A	SNP	C16orf45	ENST00000564389	human	ensembl	69_37n	1	putative	missense	c.227	p.R76K	1.000	pfam_DUF3585	pfam_DUF3585	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C16orf45	HGNC	ENSG00000166780	54	0	0	40	9	18.37	-	-	-	A	15675102	G	A	15675102	3	1	925	1	0	0	0	0	1	0	0	0	1827	933	33	2	406	2	C16orf45	16	15675102	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	13969879	15675102	74679651	273	74766										
ACSM5	0	genome.wustl.edu	37	chr16	20429440	20429440	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatggcacaggagcagagatCaagtggagctttgaggagct	15	6	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	20429440	20429440	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	1	known	silent	c.264	p.I88	0.994	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	32	0	0	33	8	19.51	-	-	-	T	20429440	C	T	20429440	2	4	925	1	0	0	0	0	0	0	0	1	187	816	29	2		2	ACSM5	16	20429440	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4754338	20429440	69925313	274	74767										
VWA3A	0	genome.wustl.edu	37	chr16	22145727	22145727	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acatcaactccatcatgtctGagatggaaaaggctctcaac	7	11	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	22145727	22145727	G	A	SNP	VWA3A	ENST00000389398	human	ensembl	69_37n	1	known	missense	c.2107	p.E703K	0.992	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	74	0	0	66	17	20.48	-	-	-	A	22145727	G	A	22145727	3	1	925	1	0	0	0	0	1	0	0	0	17337	1291	45	2	2189	2	VWA3A	16	22145727	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1716287	22145727	68209026	275	74768										
AHSP	0	genome.wustl.edu	37	chr16	31539850	31539850	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gactggatgaacttctacatCaactattacaggcagcaggt	9	9	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	31539850	31539850	C	G	SNP	AHSP	ENST00000302312	human	ensembl	69_37n	1	known	missense	c.147	p.I49M	0.997	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	-	no_errors	AHSP	HGNC	ENSG00000169877	30	0	0	30	13	30.23	-	-	-	G	31539850	C	G	31539850	3	3	925	1	0	0	0	0	1	0	0	0	421	816	29	2	153	2	AHSP	16	31539850	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9394123	31539850	58814903	276	74769										
ZNF423	0	genome.wustl.edu	37	chr16	49764732	49764732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcaggtctgccagagactcgAagtcctgctgacagtgatcg	12	11	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	49764732	49764732	A	C	SNP	ZNF423	ENST00000262383	human	ensembl	69_37n	-1	known	missense	c.227	p.F76C	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935	113	0	0	25	47	65.28	-	-	-	C	49764732	A	C	49764732	3	2	925	1	0	0	0	0	1	0	0	0	17994	246	9	5	3651	5	ZNF423	16	49764732	Missense_Mutation	SNP	A	TCGA-GM-A2D9-01A-11D-A18P-09	18224882	49764732	40590021	277	74770										
CDH8	0	genome.wustl.edu	37	chr16	62055071	62055071	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttacccggccaacaagaatCggttcaggtccagaaaactc	8	13	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	62055071	62055071	C	T	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	silent	c.237	p.P79	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	33	0	0	23	12	34.29	-	-	-	T	62055071	C	T	62055071	2	4	925	1	0	0	0	0	0	0	0	1	3145	871	31	1		1	CDH8	16	62055071	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12290339	62055071	28299682	278	74771										
CBFB	0	genome.wustl.edu	37	chr16	67100669	67100669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccaaagactggatggtatgGgctgtctggagtttgatgag	15	5	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	67100669	67100669	G	T	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	1	known	missense	c.367	p.G123C	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	139	0	0	36	56	60.87	-	-	-	T	67100669	G	T	67100669	3	4	925	1	0	0	0	0	1	0	0	0	2724	1232	43	4	381	4	CBFB	16	67100669	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5045598	67100669	23254084	279	74772										
VAC14	0	genome.wustl.edu	37	chr16	70765530	70765530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aacattctaagcctttggtaCctgtagagaaagggatagag	11	6	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	70765530	70765530	C	G	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.1529	p.G510A	1.000	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	38	0	0	18	8	30.77	-	-	-	G	70765530	C	G	70765530	3	3	925	1	0	0	0	0	1	0	0	0	17208	521	18	4	843	4	VAC14	16	70765530	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3664861	70765530	19589223	280	74773										
KCNG4	0	genome.wustl.edu	37	chr16	84256443	84256443	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccgtcctccgggggctcctCagacaccgccagcgacacgt	12	18	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	16	84256443	84256443	C	A	SNP	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	nonsense	c.940	p.E314*	0.016	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	43	0	0	25	24	48.98	-	-	-	A	84256443	C	A	84256443	4	1	925	1	0	0	0	0	0	1	0	0	8084	835	29	2	621	2	KCNG4	16	84256443	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	13490913	84256443	6098310	281	74774										
KIAA0664	0	genome.wustl.edu	37	chr17	2601227	2601227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtccaccagctcctggcgcaGgcagcagagcttgtgccggt	14	14	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	2601227	2601227	G	T	SNP	KIAA0664	ENST00000435359	human	ensembl	69_37n	-1	known	missense	c.1810	p.L604M	1.000	NULL	superfamily_GSKIP/TIF31_domain	-	no_errors	KIAA0664	HGNC	ENSG00000132361	9	0	0	10	5	33.33	-	-	-	T	2601227	G	T	2601227	3	4	925	1	0	0	0	0	1	0	0	0	8241	991	35	4	2187	4	KIAA0664	17	2601227	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		2601227	78593983	282	74775										
RNF167	0	genome.wustl.edu	37	chr17	4847936	4847936	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tactcccctgtgctcatggtGaggccctcactgcctgccca	9	17	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	4847936	4847936	G	T	SNP	RNF167	ENST00000572382	human	ensembl	69_37n	1	putative	nonsense	c.421	p.E141*	1.000	NULL	NULL	-	no_start_codon	RNF167	HGNC	ENSG00000108523	51	0	0	44	14	24.14	-	-	-	T	4847936	G	T	4847936	4	4	925	1	0	0	0	0	0	1	0	0	13544	1305	45	2		2	RNF167	17	4847936	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2246709	4847936	76347274	283	74776										
NUP88	0	genome.wustl.edu	37	chr17	5322859	5322859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agaagctggtttctcagcttCggttggactctggtttttca	11	8	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	5322859	5322859	C	T	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.112	p.E38K	0.044	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	39	0	0	25	7	21.88	-	-	-	T	5322859	C	T	5322859	3	4	925	1	0	0	0	0	1	0	0	0	10844	893	31	1	2181	1	NUP88	17	5322859	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	474923	5322859	75872351	284	74777										
KIAA0753	0	genome.wustl.edu	37	chr17	6510269	6510269	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcttctagaagtttcagcatCaagccaatcaagcctagaga	7	10	5	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	6510269	6510269	C	G	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.1933	p.D645H	1.000	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	102	0	0	81	19	18.27	-	-	-	G	6510269	C	G	6510269	3	3	925	1	0	0	0	0	1	0	0	0	8243	826	29	2	1002	2	KIAA0753	17	6510269	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1187410	6510269	74684941	285	74778										
KIAA0753	0	genome.wustl.edu	37	chr17	6510571	6510571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttcaatcttttggaagtttCagcatcaagccaagcgagcc	8	11	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	6510571	6510571	C	T	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	missense	c.1849	p.E617K	1.000	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	98	0	0	66	37	35.92	-	-	-	T	6510571	C	T	6510571	3	4	925	1	0	0	0	0	1	0	0	0	8243	835	29	2	1090	2	KIAA0753	17	6510571	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	302	6510571	74684639	286	74779										
COX10	0	genome.wustl.edu	37	chr17	13972944	13972944	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggccgcatctccgcacactCtctcctcacgcctcctgaca	6	20	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	13972944	13972944	C	T	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	missense	c.22	p.L8F	0.001	pirsf_Protohaem_IX_farnesylTrfase_mt	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	33	0	0	17	17	50	-	-	-	T	13972944	C	T	13972944	3	4	925	1	0	0	0	0	1	0	0	0	3792	913	32	2	24	2	COX10	17	13972944	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7462373	13972944	67222266	287	74780										
KIAA0100	0	genome.wustl.edu	37	chr17	26948468	26948468	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgcccactctccatcagctCctgcacagagtccagactac	6	18	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	26948468	26948468	C	G	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	missense	c.5008	p.E1670Q	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	38	0	0	19	5	20.83	-	-	-	G	26948468	C	G	26948468	3	3	925	1	0	0	0	0	1	0	0	0	8206	864	30	2	1751	2	KIAA0100	17	26948468	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12975524	26948468	54246742	288	74781										
TLCD1	0	genome.wustl.edu	37	chr17	27052391	27052391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccacgatgtccaccgtatcGtggatgaaataccctagtgg	11	11	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	27052391	27052391	G	A	SNP	TLCD1	ENST00000292090	human	ensembl	69_37n	-1	known	silent	c.291	p.H97	0.459	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TLCD1	HGNC	ENSG00000160606	52	0	0	26	11	29.73	-	-	-	A	27052391	G	A	27052391	2	1	925	1	0	0	0	0	0	0	0	1	16032	1136	40	1		1	TLCD1	17	27052391	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	103923	27052391	54142819	289	74782										
NEK8	0	genome.wustl.edu	37	chr17	27061021	27061021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gattgtgcacctgtgcctgcGaaaggctgaccagaagctgg	14	10	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	27061021	27061021	G	A	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	1	known	missense	c.68	p.R23Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	52	0	0	44	13	22.81	-	-	-	A	27061021	G	A	27061021	3	1	925	1	0	0	0	0	1	0	0	0	10402	1058	37	1	74	1	NEK8	17	27061021	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	8630	27061021	54134189	290	74783										
ATAD5	0	genome.wustl.edu	37	chr17	29182316	29182316	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agtgagtaccagtttccagaGagtcgtacatgtgcaacaaa	10	8	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	29182316	29182316	G	A	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	1	known	missense	c.2606	p.R869K	0.914	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	26	0	0	25	4	13.79	-	-	-	A	29182316	G	A	29182316	3	1	925	1	0	0	0	0	1	0	0	0	1080	942	33	2	2632	2	ATAD5	17	29182316	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2121295	29182316	52012894	291	74784										
CCL13	0	genome.wustl.edu	37	chr17	32685048	32685048	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atctccttcctccacagcttCagaaccaaactgggcaagga	7	14	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	32685048	32685048	C	T	SNP	CCL13	ENST00000577681	human	ensembl	69_37n	1	novel	nonsense	c.88	p.Q30*	0.017	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCL13	HGNC	ENSG00000181374	37	0	0	21	6	22.22	-	-	-	T	32685048	C	T	32685048	4	4	925	1	0	0	0	0	0	1	0	0	2911	825	29	2	205	2	CCL13	17	32685048	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3502732	32685048	48510162	292	74785										
ACACA	0	genome.wustl.edu	37	chr17	35605519	35605519	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caatggggttctgcatacctTaagtacatacttgactccct	7	11	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	35605519	35605519	T	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	nonsense	c.2161	p.K721*	1.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	46	0	0	26	28	51.85	-	-	-	A	35605519	T	A	35605519	4	1	925	1	0	0	0	0	0	1	0	0	106	1763	61	5	5150	5	ACACA	17	35605519	Nonsense_Mutation	SNP	T	TCGA-GM-A2D9-01A-11D-A18P-09	2920471	35605519	45589691	293	74786										
GPR179	0	genome.wustl.edu	37	chr17	36482953	36482953	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgctgcttttgagaagtgttCttccgtccctccaggtcctg	10	12	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	36482953	36482953	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.6499	p.E2167K	0.001	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	76	0	0	36	18	33.33	-	-	-	T	36482953	C	T	36482953	3	4	925	1	0	0	0	0	1	0	0	0	6724	922	32	2	608	2	GPR179	17	36482953	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	877434	36482953	44712257	294	74787										
CDK12	0	genome.wustl.edu	37	chr17	37627609	37627609	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gactctaaacccatagcactGaaagaggagattgttactcc	8	10	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	37627609	37627609	G	A	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	silent	c.1524	p.L508	0.732	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	50	0	0	47	10	17.54	-	-	-	A	37627609	G	A	37627609	2	1	925	1	0	0	0	0	0	0	0	1	3157	1277	45	2		2	CDK12	17	37627609	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1144656	37627609	43567601	295	74788										
KCNH4	0	genome.wustl.edu	37	chr17	40323836	40323836	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gagcagcgggtcattggcctCcatctcccggcgcccgatga	13	15	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	40323836	40323836	C	A	SNP	KCNH4	ENST00000264661	human	ensembl	69_37n	-1	known	nonsense	c.1165	p.E389*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558	22	0	0	18	11	37.93	-	-	-	A	40323836	C	A	40323836	4	1	925	1	0	0	0	0	0	1	0	0	8088	864	30	2	1928	2	KCNH4	17	40323836	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2696227	40323836	40871374	296	74789										
ATP6V0A1	0	genome.wustl.edu	37	chr17	40652837	40652837	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttacaagtggacggcctatGatgctcatacctctgagaat	9	9	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	40652837	40652837	G	T	SNP	ATP6V0A1	ENST00000264649	human	ensembl	69_37n	1	known	missense	c.1813	p.D605Y	1.000	pfam_ATPase_V0/A0_a	pfam_ATPase_V0/A0_a	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627	132	1	0.75	102	33	24.44	-	-	-	T	40652837	G	T	40652837	3	4	925	1	0	0	0	0	1	0	0	0	1172	1290	45	2	1871	2	ATP6V0A1	17	40652837	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	329001	40652837	40542373	297	74790										
TTLL6	0	genome.wustl.edu	37	chr17	46894360	46894360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctactcccccgtctcgcccCgctgggctgctagtccagct	9	20	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	46894360	46894360	C	T	SNP	TTLL6	ENST00000376681	human	ensembl	69_37n	-1	known	missense	c.80	p.R27Q	0.017	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TTLL6	HGNC	ENSG00000170703	23	0	0	30	6	16.67	-	-	-	T	46894360	C	T	46894360	3	4	925	1	0	0	0	0	1	0	0	0	16828	639	23	1	2741	1	TTLL6	17	46894360	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6241523	46894360	34300850	298	74791										
IGF2BP1	0	genome.wustl.edu	37	chr17	47118821	47118821	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaggaaggacggaacctgaaGaaggtagagcaagataccga	14	6	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	47118821	47118821	G	A	SNP	IGF2BP1	ENST00000290341	human	ensembl	69_37n	1	known	silent	c.900	p.K300	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	91	0	0	70	23	24.73	-	-	-	A	47118821	G	A	47118821	2	1	925	1	0	0	0	0	0	0	0	1	7627	933	33	2		2	IGF2BP1	17	47118821	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	224461	47118821	34076389	299	74792										
SPAG9	0	genome.wustl.edu	37	chr17	49133809	49133809	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgtaatgcattatattccttCttcagttctgcttctctttc	4	10	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	49133809	49133809	C	G	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.459	p.K153N	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	135	0	0	123	35	22.15	-	-	-	G	49133809	C	G	49133809	3	3	925	1	0	0	0	0	1	0	0	0	15076	912	32	2	3618	2	SPAG9	17	49133809	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2014988	49133809	32061401	300	74793										
PPM1E	0	genome.wustl.edu	37	chr17	57057536	57057536	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgcccacaaattagtggcatCagctcgtgatgctgggtcaa	11	10	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	57057536	57057536	C	T	SNP	PPM1E	ENST00000308249	human	ensembl	69_37n	1	known	missense	c.1412	p.S471L	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1E	HGNC	ENSG00000175175	73	0	0	65	14	17.72	-	-	-	T	57057536	C	T	57057536	3	4	925	1	0	0	0	0	1	0	0	0	12415	838	29	2	1438	2	PPM1E	17	57057536	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7923727	57057536	24137674	301	74794										
HEATR6	0	genome.wustl.edu	37	chr17	58156108	58156108	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttctcggagatgagctgatcGaagagcaggtggatctcggt	15	7	2	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	58156108	58156108	G	A	SNP	HEATR6	ENST00000593228	human	ensembl	69_37n	-1	novel	nonsense	c.166	p.R56*	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR6	HGNC	ENSG00000068097	8	0	0	3	5	62.5	-	-	-	A	58156108	G	A	58156108	4	1	925	1	0	0	0	0	0	1	0	0	7084	1049	37	1	3457	1	HEATR6	17	58156108	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1098572	58156108	23039102	302	74795										
TSEN54	0	genome.wustl.edu	37	chr17	73517943	73517943	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagggggcccctttcagcttCtggggtccctgggccccagc	14	16	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	73517943	73517943	C	A	SNP	TSEN54	ENST00000333213	human	ensembl	69_37n	1	known	missense	c.781	p.L261M	0.036	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173	8	0	0	6	4	40	-	-	-	A	73517943	C	A	73517943	3	1	925	1	0	0	0	0	1	0	0	0	16710	912	32	2	811	2	TSEN54	17	73517943	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	15361835	73517943	7677267	303	74796										
RNF213	0	genome.wustl.edu	37	chr17	78307961	78307961	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gaccagatcaaccaggagctCatccaggccaaaaagctgct	9	13	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	17	78307961	78307961	C	A	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.4200	p.L1400	0.771	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	41	0	0	26	19	42.22	-	-	-	A	78307961	C	A	78307961	2	1	925	1	0	0	0	0	0	0	0	1	13563	813	29	2		2	RNF213	17	78307961	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	4790018	78307961	2887249	304	74797										
NDC80	0	genome.wustl.edu	37	chr18	2575037	2575037	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtataaacaaaccgacatctGaaagaaaagtctcgctattt	6	8	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	18	2575037	2575037	G	A	SNP	NDC80	ENST00000261597	human	ensembl	69_37n	1	known	missense	c.151	p.E51K	1.000	pfam_Kinetochore_Ndc80	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986	38	0	0	33	6	15.38	-	-	-	A	2575037	G	A	2575037	3	1	925	1	0	0	0	0	1	0	0	0	10314	1291	45	2	157	2	NDC80	18	2575037	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		2575037	75502211	305	74798										
ZFP161	0	genome.wustl.edu	37	chr18	5290995	5290995	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atattgttctcgtgccttttCagatcagatgccttggcaaa	8	9	3	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	18	5290995	5290995	C	T	SNP	ZFP161	ENST00000357006	human	ensembl	69_37n	-1	known	silent	c.1212	p.L404	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZFP161	HGNC	ENSG00000198081	96	0	0	86	15	14.85	-	-	-	T	5290995	C	T	5290995	2	4	925	1	0	0	0	0	0	0	0	1	17736	813	29	2		2	ZFP161	18	5290995	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2715958	5290995	72786253	306	74799										
POTEC	0	genome.wustl.edu	37	chr18	14511953	14511953	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttcctgcaacatgctgttttCacgcaagagatcttcttctt	6	11	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	18	14511953	14511953	C	T	SNP	POTEC	ENST00000358970	human	ensembl	69_37n	-1	known	missense	c.1573	p.E525K	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEC	HGNC	ENSG00000183206	130	0	0	96	21	17.95	-	-	-	T	14511953	C	T	14511953	3	4	925	1	0	0	0	0	1	0	0	0	12336	835	29	2	59	2	POTEC	18	14511953	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9220958	14511953	63565295	307	74800										
SLC39A6	0	genome.wustl.edu	37	chr18	33696718	33696718	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cttcttaatctccacatcatCatcattttcaggtttcttct	2	12	8	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	18	33696718	33696718	C	T	SNP	SLC39A6	ENST00000269187	human	ensembl	69_37n	-1	known	missense	c.1384	p.D462N	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	134	0	0	118	16	11.94	-	-	-	T	33696718	C	T	33696718	3	4	925	1	0	0	0	0	1	0	0	0	14711	826	29	2	915	2	SLC39A6	18	33696718	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	19184765	33696718	44380530	308	74801										
SBNO2	0	genome.wustl.edu	37	chr19	1119543	1119543	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gatggcgtgcaggaactcctCaaagttccggaagggtgtgc	15	9	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	1119543	1119543	C	G	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	missense	c.1345	p.E449Q	1.000	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	27	0	0	11	5	31.25	-	-	-	G	1119543	C	G	1119543	3	3	925	1	0	0	0	0	1	0	0	0	13950	835	29	2	2835	2	SBNO2	19	1119543	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		1119543	58009440	309	74802										
DOT1L	0	genome.wustl.edu	37	chr19	2223463	2223463	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagacgaggagccaggctctGaggacgagcccagcagtgct	15	12	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	2223463	2223463	G	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	1	known	missense	c.3574	p.E1192K	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	24	0	0	11	10	47.62	-	-	-	A	2223463	G	A	2223463	3	1	925	1	0	0	0	0	1	0	0	0	4744	1291	45	2	3672	2	DOT1L	19	2223463	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1103920	2223463	56905520	310	74803										
UBXN6	0	genome.wustl.edu	37	chr19	4445603	4445603	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccatgtcccacgagaaggtCaggagggcagagggcacctg	16	11	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	4445603	4445603	C	G	SNP	UBXN6	ENST00000591919	human	ensembl	69_37n	-1	novel	missense	c.1006	p.D336H	1.000	pfam_UBX,smart_UBX,pfscan_UBX	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBXN6	HGNC	ENSG00000167671	19	0	0	23	10	30.3	-	-	-	G	4445603	C	G	4445603	3	3	925	1	0	0	0	0	1	0	0	0	17014	813	29	2	111	2	UBXN6	19	4445603	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2222140	4445603	54683380	311	74804										
INSR	0	genome.wustl.edu	37	chr19	7152896	7152896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgtgcttctgagaatcttcaGactcgaatggtggagaccag	12	8	3	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	7152896	7152896	G	C	SNP	INSR	ENST00000302850	human	ensembl	69_37n	-1	known	missense	c.2072	p.S691C	0.299	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	INSR	HGNC	ENSG00000171105	41	0	0	29	10	25.64	-	-	-	C	7152896	G	C	7152896	3	2	925	1	0	0	0	0	1	0	0	0	7827	942	33	2	2128	2	INSR	19	7152896	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2707293	7152896	51976087	312	74805										
MUC16	0	genome.wustl.edu	37	chr19	8995652	8995652	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tacctgaagggccaaatatcGaggctggagtcttagatgct	12	8	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	8995652	8995652	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.41336	p.S13779W	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	48	0	0	44	18	29.03	-	-	-	C	8995652	G	C	8995652	3	2	925	1	0	0	0	0	1	0	0	0	10045	1059	37	3	2275	3	MUC16	19	8995652	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1842756	8995652	50133331	313	74806										
SMARCA4	0	genome.wustl.edu	37	chr19	11123624	11123624	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggccgcatctgtccttgcaGatcaaaggtttggagtggct	13	9	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	11123624	11123624	G	T	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	1	known	splice_site	c.2275-1	e15-1	1.000	-	-	-	no_errors	SMARCA4	HGNC	ENSG00000127616	74	0	0	36	25	40.32	-	-	-	T	11123624	G	T	11123624	5	4	925	1	0	0	0	0	0	0	1	0	14859	956	33	2	2332	2	SMARCA4	19	11123624	Splice_Site	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2127972	11123624	48005359	314	74807										
ZNF442	0	genome.wustl.edu	37	chr19	12460899	12460899	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctatgttgagaaaggtatgtGaaacaactgaatgctttccc	9	7	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	12460899	12460899	G	A	SNP	ZNF442	ENST00000242804	human	ensembl	69_37n	-1	known	silent	c.1500	p.F500	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342	58	0	0	43	13	23.21	-	-	-	A	12460899	G	A	12460899	2	1	925	1	0	0	0	0	0	0	0	1	18011	1281	45	2		2	ZNF442	19	12460899	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1337275	12460899	46668084	315	74808										
CACNA1A	0	genome.wustl.edu	37	chr19	13370461	13370461	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taatggaattcatacttcttCcactcccggtctcgcgcctt	6	14	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	13370461	13370461	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	nonsense	c.4305	p.W1435*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	61	0	0	56	18	24.32	-	-	-	T	13370461	C	T	13370461	4	4	925	1	0	0	0	0	0	1	0	0	2563	856	30	2	3401	2	CACNA1A	19	13370461	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	909562	13370461	45758522	316	74809										
CLEC17A	0	genome.wustl.edu	37	chr19	14706106	14706106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgtgaatcttgagccttctCcattgcagccatccctggcc	8	15	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	14706106	14706106	C	A	SNP	CLEC17A	ENST00000417570	human	ensembl	69_37n	1	known	missense	c.424	p.P142T	0.004	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912	134	0	0	118	49	29.34	-	-	-	A	14706106	C	A	14706106	3	1	925	1	0	0	0	0	1	0	0	0	3531	855	30	2	399	2	CLEC17A	19	14706106	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1335645	14706106	44422877	317	74810										
CLEC17A	0	genome.wustl.edu	37	chr19	14720887	14720887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tccatccagcttctgggagcCagaggaacccaataacatcc	8	14	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	14720887	14720887	C	T	SNP	CLEC17A	ENST00000417570	human	ensembl	69_37n	1	known	missense	c.1016	p.P339L	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912	95	0	0	64	21	24.71	-	-	-	T	14720887	C	T	14720887	3	4	925	1	0	0	0	0	1	0	0	0	3531	581	21	4	901	4	CLEC17A	19	14720887	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	14781	14720887	44408096	318	74811										
OR7A5	0	genome.wustl.edu	37	chr19	14938550	14938550	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gggatttctaaggctgtgcaGaaggacagccgtactaccat	12	9	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	14938550	14938550	G	T	SNP	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	missense	c.504	p.F168L	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	40	0	0	48	19	28.36	-	-	-	T	14938550	G	T	14938550	3	4	925	1	0	0	0	0	1	0	0	0	11289	933	33	2	459	2	OR7A5	19	14938550	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	217663	14938550	44190433	319	74812										
CPAMD8	0	genome.wustl.edu	37	chr19	17003994	17003994	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aaggctgggctgtagacgaaGacagggctcagaagccctgg	16	9	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	17003994	17003994	G	C	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.5756	p.S1919C	0.001	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	32	0	0	37	8	17.78	-	-	-	C	17003994	G	C	17003994	3	2	925	1	0	0	0	0	1	0	0	0	3825	929	33	2	78	2	CPAMD8	19	17003994	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2065444	17003994	42124989	320	74813										
SSBP4	0	genome.wustl.edu	37	chr19	18543526	18543526	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccagatcccctactcctcctCatcccccggcagctacaccg	5	22	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	18543526	18543526	C	T	SNP	SSBP4	ENST00000270061	human	ensembl	69_37n	1	known	missense	c.767	p.S256L	0.966	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP4	HGNC	ENSG00000130511	45	0	0	19	12	38.71	-	-	-	T	18543526	C	T	18543526	3	4	925	1	0	0	0	0	1	0	0	0	15273	838	29	2	813	2	SSBP4	19	18543526	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1539532	18543526	40585457	321	74814										
ANKRD27	0	genome.wustl.edu	37	chr19	33092966	33092966	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atactccttgcggtcagtttCagccacatcatctaatgaag	7	11	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	33092966	33092966	C	T	SNP	ANKRD27	ENST00000306065	human	ensembl	69_37n	-1	known	missense	c.2722	p.E908K	0.006	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	80	0	0	59	7	10.61	-	-	-	T	33092966	C	T	33092966	3	4	925	1	0	0	0	0	1	0	0	0	655	835	29	2	446	2	ANKRD27	19	33092966	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	14549440	33092966	26036017	322	74815										
RYR1	0	genome.wustl.edu	37	chr19	39003071	39003071	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gtggcactgctgccggtcctCaccaccctcttccagcacat	8	18	2	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	39003071	39003071	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.9420	p.L3140	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	17	0	0	15	11	42.31	-	-	-	T	39003071	C	T	39003071	2	4	925	1	0	0	0	0	0	0	0	1	13854	813	29	2		2	RYR1	19	39003071	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	5910105	39003071	20125912	323	74816										
FCGBP	0	genome.wustl.edu	37	chr19	40433086	40433086	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agctgtgccgagctccacttCagcatacgagaactcactgc	9	14	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	40433086	40433086	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.1183	p.E395K	0.971	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	63	0	0	42	14	25	-	-	-	T	40433086	C	T	40433086	3	4	925	1	0	0	0	0	1	0	0	0	5824	835	29	2	15174	2	FCGBP	19	40433086	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1430015	40433086	18695897	324	74817										
MEGF8	0	genome.wustl.edu	37	chr19	42880508	42880508	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcaccgtctgcttcccacctGaccctactgccccggcctcc	6	22	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	42880508	42880508	G	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	1	known	missense	c.8119	p.D2707Y	0.999	NULL	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	19	0	0	19	6	24	-	-	-	T	42880508	G	T	42880508	3	4	925	1	0	0	0	0	1	0	0	0	9534	1290	45	2	8080	2	MEGF8	19	42880508	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2447422	42880508	16248475	325	74818										
FUZ	0	genome.wustl.edu	37	chr19	50311871	50311871	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acggtgaagaggcagcgcttCagttccaggtggaggagcag	17	8	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	50311871	50311871	C	T	SNP	FUZ	ENST00000313777	human	ensembl	69_37n	-1	known	silent	c.918	p.L306	0.985	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361	44	0	0	68	17	20	-	-	-	T	50311871	C	T	50311871	2	4	925	1	0	0	0	0	0	0	0	1	6161	813	29	2		2	FUZ	19	50311871	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7431363	50311871	8817112	326	74819										
ZNF432	0	genome.wustl.edu	37	chr19	52538468	52538468	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	catctccactaaatttagtaGagttgttaatttcacagctt	5	8	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	52538468	52538468	G	C	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.464	p.S155C	0.009	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	30	0	0	48	12	20	-	-	-	C	52538468	G	C	52538468	3	2	925	1	0	0	0	0	1	0	0	0	18002	942	33	2	1498	2	ZNF432	19	52538468	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2226597	52538468	6590515	327	74820										
ZNF432	0	genome.wustl.edu	37	chr19	52538586	52538586	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagacaaaggcttttggtttGagaggcagtatttccaaatg	11	5	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	52538586	52538586	G	C	SNP	ZNF432	ENST00000221315	human	ensembl	69_37n	-1	known	missense	c.346	p.Q116E	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087	47	0	0	50	16	24.24	-	-	-	C	52538586	G	C	52538586	3	2	925	1	0	0	0	0	1	0	0	0	18002	1299	45	2	1616	2	ZNF432	19	52538586	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	118	52538586	6590397	328	74821										
ZNF841	0	genome.wustl.edu	37	chr19	52568470	52568470	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgtttagtgaggcctgagcGactaatgtaagatttgccac	11	7	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	52568470	52568470	G	C	SNP	ZNF841	ENST00000389534	human	ensembl	69_37n	-1	known	missense	c.2665	p.R889G	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608	142	0	0	139	42	23.2	-	-	-	C	52568470	G	C	52568470	3	2	925	1	0	0	0	0	1	0	0	0	18282	1058	37	3	113	3	ZNF841	19	52568470	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	29884	52568470	6560513	329	74822										
ZNF836	0	genome.wustl.edu	37	chr19	52658282	52658282	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atttataaggtttttctccaGaatgaatcatttggtgtttg	8	4	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	52658282	52658282	G	A	SNP	ZNF836	ENST00000322146	human	ensembl	69_37n	-1	known	missense	c.2654	p.S885F	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267	92	0	0	126	24	16	-	-	-	A	52658282	G	A	52658282	3	1	925	1	0	0	0	0	1	0	0	0	18280	942	33	2	158	2	ZNF836	19	52658282	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	89812	52658282	6470701	330	74823										
LILRB1	0	genome.wustl.edu	37	chr19	55145475	55145475	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggtcggatccccagagtggtGagtgacgggctctgagtggg	19	8	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	55145475	55145475	G	A	SNP	LILRB1	ENST00000473412	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	31	0	0	54	9	14.29	-	-	-	A	55145475	G	A	55145475	1	1	925	0	1	0	0	0	0	0	0	0	8845	1305	45	2		2	LILRB1	19	55145475	RNA	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2487193	55145475	3983508	331	74824										
ZSCAN4	0	genome.wustl.edu	37	chr19	58190194	58190194	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taagacaagctaccgccagtCatccacataccaccgccata	5	16	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	58190194	58190194	C	G	SNP	ZSCAN4	ENST00000318203	human	ensembl	69_37n	1	known	nonsense	c.1223	p.S408*	0.989	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN4	HGNC	ENSG00000180532	26	0	0	22	7	24.14	-	-	-	G	58190194	C	G	58190194	4	3	925	1	0	0	0	0	0	1	0	0	18328	838	29	2	1233	2	ZSCAN4	19	58190194	Nonsense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3044719	58190194	938789	332	74825										
ZNF135	0	genome.wustl.edu	37	chr19	58578410	58578410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atgactcctgaaagacaaagCccccacacatggggaacacg	9	13	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	58578410	58578410	C	T	SNP	ZNF135	ENST00000391699	human	ensembl	69_37n	1	putative	missense	c.611	p.A204V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF135	HGNC	ENSG00000176293	28	0	0	24	9	27.27	-	-	-	T	58578410	C	T	58578410	3	4	925	1	0	0	0	0	1	0	0	0	17821	738	26	4	761	4	ZNF135	19	58578410	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	388216	58578410	550573	333	74826										
TRIM28	0	genome.wustl.edu	37	chr19	59061137	59061137	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgctcactctgccatgtgctCcctgacctgaaggaggagga	12	12	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	19	59061137	59061137	C	T	SNP	TRIM28	ENST00000253024	human	ensembl	69_37n	1	known	silent	c.2016	p.L672	0.935	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726	39	0	0	31	30	49.18	-	-	-	T	59061137	C	T	59061137	2	4	925	1	0	0	0	0	0	0	0	1	16598	842	30	2		2	TRIM28	19	59061137	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	482727	59061137	67846	334	74827										
ZNF343	0	genome.wustl.edu	37	chr20	2463944	2463944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tttccggctaaagcctcggcCacactcactgcacacgtaag	8	15	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	2463944	2463944	C	T	SNP	ZNF343	ENST00000278772	human	ensembl	69_37n	-1	known	missense	c.1663	p.G555S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF343	HGNC	ENSG00000088876	69	0	0	39	30	43.48	-	-	-	T	2463944	C	T	2463944	3	4	925	1	0	0	0	0	1	0	0	0	17954	594	21	4	140	4	ZNF343	20	2463944	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		2463944	60561576	335	74828										
RALGAPA2	0	genome.wustl.edu	37	chr20	20571870	20571870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gggatgtcggaggtgctgctGctccgaaggacctgctgctg	17	10	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	20571870	20571870	G	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	69_37n	-1	known	missense	c.2292	p.S764R	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	31	0	0	28	17	37.78	-	-	-	T	20571870	G	T	20571870	3	4	925	1	0	0	0	0	1	0	0	0	13097	1310	46	4	3421	4	RALGAPA2	20	20571870	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	18107926	20571870	42453650	336	74829										
CBFA2T2	0	genome.wustl.edu	37	chr20	32217579	32217579	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	caaggcgctctatggcagttCtgcggcgctgtcaggaatca	13	11	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	32217579	32217579	C	G	SNP	CBFA2T2	ENST00000346541	human	ensembl	69_37n	1	known	missense	c.1114	p.L372V	1.000	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699	44	0	0	45	11	19.64	-	-	-	G	32217579	C	G	32217579	3	3	925	1	0	0	0	0	1	0	0	0	2722	912	32	2	1182	2	CBFA2T2	20	32217579	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	11645709	32217579	30807941	337	74830										
MMP9	0	genome.wustl.edu	37	chr20	44642428	44642428	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctctccaagaagcttttcttCttctctggttagttacctac	5	12	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	44642428	44642428	C	A	SNP	MMP9	ENST00000372330	human	ensembl	69_37n	1	known	missense	c.1743	p.F581L	1.000	pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin/matrixin_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin/matrixin_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A_matrixin	-	no_errors	MMP9	HGNC	ENSG00000100985	34	0	0	30	6	16.67	-	-	-	A	44642428	C	A	44642428	3	1	925	1	0	0	0	0	1	0	0	0	9741	912	32	2	1781	2	MMP9	20	44642428	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	12424849	44642428	18383092	338	74831										
CDH22	0	genome.wustl.edu	37	chr20	44815342	44815342	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	accacgctgatggtctggatGagctgaagggtgaggagggg	19	6	1	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	44815342	44815342	G	A	SNP	CDH22	ENST00000372262	human	ensembl	69_37n	-1	known	silent	c.1548	p.L516	0.989	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	78	0	0	59	18	23.38	-	-	-	A	44815342	G	A	44815342	2	1	925	1	0	0	0	0	0	0	0	1	3136	1277	45	2		2	CDH22	20	44815342	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	172914	44815342	18210178	339	74832										
ZMYND8	0	genome.wustl.edu	37	chr20	45891111	45891111	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ggagctgacagttgaggagaGaagggctttgggctgccgga	19	6	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	45891111	45891111	G	C	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.1563	p.F521L	1.000	pfam_DUF3544	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	108	0	0	79	19	19.39	-	-	-	C	45891111	G	C	45891111	3	2	925	1	0	0	0	0	1	0	0	0	17807	933	33	2	2072	2	ZMYND8	20	45891111	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1075769	45891111	17134409	340	74833										
SLC9A8	0	genome.wustl.edu	37	chr20	48467329	48467329	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgtgtgtgtctgtgtgtttGtgtgttttattttacaggct	12	3	1	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	48467329	48467329	G	C	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	1	known	missense	c.565	p.V189L	0.998	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	54	0	0	44	12	21.43	-	-	-	C	48467329	G	C	48467329	3	2	925	1	0	0	0	0	1	0	0	0	14809	1392	48	4		4	SLC9A8	20	48467329	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	2576218	48467329	14558191	341	74834										
DPM1	0	genome.wustl.edu	37	chr20	49558613	49558613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agccatatacacctccatttCctttgtagcgagttccagag	7	12	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	49558613	49558613	C	A	SNP	DPM1	ENST00000371582	human	ensembl	69_37n	-1	known	missense	c.449	p.G150V	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419	150	0	0	149	54	26.6	-	-	-	A	49558613	C	A	49558613	3	1	925	1	0	0	0	0	1	0	0	0	4759	855	30	2	349	2	DPM1	20	49558613	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1091284	49558613	13466907	342	74835										
GNAS	0	genome.wustl.edu	37	chr20	57485827	57485827	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gagaacatccgccgtgtgttCaacgactgccgtgacatcat	10	12	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	57485827	57485827	C	G	SNP	GNAS	ENST00000354359	human	ensembl	69_37n	1	known	missense	c.1131	p.F377L	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	55	0	0	81	10	10.99	-	-	-	G	57485827	C	G	57485827	3	3	925	1	0	0	0	0	1	0	0	0	6562	825	29	2	3995	2	GNAS	20	57485827	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	7927214	57485827	5539693	343	74836										
PRPF6	0	genome.wustl.edu	37	chr20	62641605	62641605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tggaaagcagccgttgagctGgaagaacctgaagatgctag	14	7	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	20	62641605	62641605	G	C	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	silent	c.1239	p.L413	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	39	0	0	24	9	27.27	-	-	-	C	62641605	G	C	62641605	2	2	925	1	0	0	0	0	0	0	0	1	12655	1335	47	4		4	PRPF6	20	62641605	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	5155778	62641605	383915	344	74837										
CYYR1	0	genome.wustl.edu	37	chr21	27945194	27945194	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctccgtcactgacctgcgtaGacaaagagcaggaccaactt	9	13	1	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	27945194	27945194	G	C	SNP	CYYR1	ENST00000435845	human	ensembl	69_37n	-1	known	silent	c.390	p.V130	0.896	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265	21	0	0	13	5	27.78	-	-	-	C	27945194	G	C	27945194	2	2	925	1	0	0	0	0	0	0	0	1	4242	929	33	2		2	CYYR1	21	27945194	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		27945194	20184701	345	74838										
GCFC1	0	genome.wustl.edu	37	chr21	34133468	34133468	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agcatcatcatcactcccctCaattcctacagccatgagca	4	16	4	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	34133468	34133468	C	G	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	missense	c.877	p.E293Q	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	86	0	0	74	31	29.52	-	-	-	G	34133468	C	G	34133468	3	3	925	1	0	0	0	0	1	0	0	0	6339	835	29	2	2050	2	GCFC1	21	34133468	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6188274	34133468	13996427	346	74839										
DONSON	0	genome.wustl.edu	37	chr21	34955797	34955797	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	taaacctaaacttttaccttCatttctcatagcttctctta	1	11	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	34955797	34955797	C	T	SNP	DONSON	ENST00000303071	human	ensembl	69_37n	-1	known	missense	c.961	p.E321K	1.000	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147	46	0	0	43	17	28.33	-	-	-	T	34955797	C	T	34955797	3	4	925	1	0	0	0	0	1	0	0	0	4741	835	29	2	763	2	DONSON	21	34955797	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	822329	34955797	13174098	347	74840										
RUNX1	0	genome.wustl.edu	37	chr21	36171619	36171619	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgagagtcgactggaaagttCtgcagagagggttgtcatgc	15	6	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	36171619	36171619	C	T	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.946	p.E316K	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	83	0	0	43	17	28.33	-	-	-	T	36171619	C	T	36171619	3	4	925	1	0	0	0	0	1	0	0	0	13832	922	32	2	504	2	RUNX1	21	36171619	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1215822	36171619	11958276	348	74841										
C2CD2	0	genome.wustl.edu	37	chr21	43342090	43342090	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cacatctttacctgtaaatgGaaaggggagagccgcatgtc	11	9	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	43342090	43342090	G	A	SNP	C2CD2	ENST00000380486	human	ensembl	69_37n	-1	known	silent	c.483	p.F161	0.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	C2CD2	HGNC	ENSG00000157617	44	0	0	29	14	32.56	-	-	-	A	43342090	G	A	43342090	2	1	925	1	0	0	0	0	0	0	0	1	2172	1165	41	2		2	C2CD2	21	43342090	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	7170471	43342090	4787805	349	74842										
UBASH3A	0	genome.wustl.edu	37	chr21	43862675	43862675	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tgagcctggaagagctgaaaGaggcaaatttcaacattgac	11	7	1	5			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	21	43862675	43862675	G	C	SNP	UBASH3A	ENST00000319294	human	ensembl	69_37n	1	known	missense	c.1600	p.E534Q	0.074	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185	46	0	0	35	4	10.26	-	-	-	C	43862675	G	C	43862675	3	2	925	1	0	0	0	0	1	0	0	0	16936	943	33	2	1646	2	UBASH3A	21	43862675	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	520585	43862675	4267220	350	74843										
IL2RB	0	genome.wustl.edu	37	chr22	37532390	37532390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctggggtgagcgtctccaggCagatccattcctgcttctgc	12	13	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	22	37532390	37532390	C	T	SNP	IL2RB	ENST00000216223	human	ensembl	69_37n	-1	known	missense	c.581	p.C194Y	0.006	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RB	HGNC	ENSG00000100385	23	0	0	20	7	25.93	-	-	-	T	37532390	C	T	37532390	3	4	925	1	0	0	0	0	1	0	0	0	7741	710	25	4	1090	4	IL2RB	22	37532390	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09		37532390	13772176	351	74844										
ANKRD54	0	genome.wustl.edu	37	chr22	38227992	38227992	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atctgcagactgagggaggtGaagctggccaggaggtcagt	17	7	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	22	38227992	38227992	G	A	SNP	ANKRD54	ENST00000458278	human	ensembl	69_37n	-1	known	missense	c.608	p.S203L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKRD54	HGNC	ENSG00000100124	48	0	0	31	12	27.91	-	-	-	A	38227992	G	A	38227992	3	1	925	1	0	0	0	0	1	0	0	0	679	1281	45	2	45	2	ANKRD54	22	38227992	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	695602	38227992	13076574	352	74845										
PICK1	0	genome.wustl.edu	37	chr22	38468540	38468540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agccccagccagctgcgagcGaggcttttgtgaagttcgcc	13	13	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	22	38468540	38468540	G	A	SNP	PICK1	ENST00000356976	human	ensembl	69_37n	1	known	missense	c.613	p.E205K	1.000	pfam_Arfaptin_homology_dom,pfam_BAR_dom,pfscan_Arfaptin_homology_dom	pfam_Arfaptin_homology_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_Arfaptin_homology_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151	34	0	0	33	8	19.51	-	-	-	A	38468540	G	A	38468540	3	1	925	1	0	0	0	0	1	0	0	0	11955	1059	37	1	643	1	PICK1	22	38468540	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	240548	38468540	12836026	353	74846										
CRELD2	0	genome.wustl.edu	37	chr22	50316065	50316065	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ccagccaggctacagctccaGagtatggatagctgccttct	10	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	22	50316065	50316065	G	A	SNP	CRELD2	ENST00000404488	human	ensembl	69_37n	1	known	missense	c.713	p.R238K	0.001	superfamily_Growth_fac_rcpt	pfam_DUF3456,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_Furin_repeat,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164	29	0	0	24	6	19.35	-	-	-	A	50316065	G	A	50316065	3	1	925	1	0	0	0	0	1	0	0	0	3897	942	33	2	735	2	CRELD2	22	50316065	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	11847525	50316065	988501	354	74847										
PLXNB2	0	genome.wustl.edu	37	chr22	50718173	50718173	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acctgatgtttgatggccttGaagagcttgtacaggggctc	13	8	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	22	50718173	50718173	G	C	SNP	PLXNB2	ENST00000359337	human	ensembl	69_37n	-1	known	missense	c.4275	p.F1425L	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB2	HGNC	ENSG00000196576	68	0	0	53	29	35.37	-	-	-	C	50718173	G	C	50718173	3	2	925	1	0	0	0	0	1	0	0	0	12198	1281	45	2	1285	2	PLXNB2	22	50718173	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	402108	50718173	586393	355	74848										
PPEF1	0	genome.wustl.edu	37	chrX	18842151	18842151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	acatagaccaaaatggaaacGttgaatacatgtccagcttc	7	9	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	18842151	18842151	G	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	1	known	missense	c.1612	p.V538I	0.002	pirsf_Ser/Thr-Pase_EF-hand_contain	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	92	0	0	83	36	30	-	-	-	A	18842151	G	A	18842151	3	1	925	1	0	0	0	0	1	0	0	0	12380	1145	40	1	1666	1	PPEF1	23	18842151	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09		18842151	136428409	356	74849										
SLC9A7	0	genome.wustl.edu	37	chrX	46521524	46521524	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tacctagaaaaatgccaactGacttaaaaaaggcagcagca	7	9	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	46521524	46521524	G	A	SNP	SLC9A7	ENST00000328306	human	ensembl	69_37n	-1	known	missense	c.968	p.S323L	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	44	0	0	31	12	27.91	-	-	-	A	46521524	G	A	46521524	3	1	925	1	0	0	0	0	1	0	0	0	14808	1294	45	2	1253	2	SLC9A7	23	46521524	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	27679373	46521524	108749036	357	74850										
USP11	0	genome.wustl.edu	37	chrX	47104784	47104784	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctagggctacgtgaagcatGactgcgtcgggtacgtgatg	15	9	0	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	47104784	47104784	G	A	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	missense	c.2302	p.D768N	0.998	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	60	0	0	41	20	32.79	-	-	-	A	47104784	G	A	47104784	3	1	925	1	0	0	0	0	1	0	0	0	17139	1290	45	2	2368	2	USP11	23	47104784	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	583260	47104784	108165776	358	74851										
HUWE1	0	genome.wustl.edu	37	chrX	53589161	53589161	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gccactgctgtcctcttcctGagtgtgctcctcctcatcct	7	17	2	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	53589161	53589161	G	C	SNP	HUWE1	ENST00000427052	human	ensembl	69_37n	-1	known	nonsense	c.4349	p.S1450*	1.000	NULL	pfam_HECT,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HUWE1	HGNC	ENSG00000086758	85	0	0	80	26	24.53	-	-	-	C	53589161	G	C	53589161	4	2	925	1	0	0	0	0	0	1	0	0	7515	1299	45	2	5999	2	HUWE1	23	53589161	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	6484377	53589161	101681399	359	74852										
FAM155B	0	genome.wustl.edu	37	chrX	68725797	68725797	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	gactgtagcctggacaccctGatgggggacctgctggccgt	15	12	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	68725797	68725797	G	A	SNP	FAM155B	ENST00000252338	human	ensembl	69_37n	1	known	silent	c.672	p.L224	1.000	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054	22	0	0	20	7	25.93	-	-	-	A	68725797	G	A	68725797	2	1	925	1	0	0	0	0	0	0	0	1	5506	1277	45	2		2	FAM155B	23	68725797	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	15136636	68725797	86544763	360	74853										
ZNF711	0	genome.wustl.edu	37	chrX	84510489	84510489	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aagctgatgttgccattgaaGaggatttagaggaagatgat	13	3	0	6			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	84510489	84510489	G	A	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	missense	c.238	p.E80K	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	104	0	0	70	30	30	-	-	-	A	84510489	G	A	84510489	3	1	925	1	0	0	0	0	1	0	0	0	18212	943	33	2	310	2	ZNF711	23	84510489	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	15784692	84510489	70760071	361	74854										
BTK	0	genome.wustl.edu	37	chrX	100617649	100617649	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cagaagcaagggtgatatttCtgaaccagatcactgttgta	10	7	2	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	100617649	100617649	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	silent	c.420	p.Q140	1.000	pfam_Znf_Btk_motif,smart_Znf_Btk_motif,pfscan_Znf_Btk_motif,prints_Znf_Btk_motif	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	68	0	0	50	13	20.31	-	-	-	T	100617649	C	T	100617649	2	4	925	1	0	0	0	0	0	0	0	1	1566	912	32	2		2	BTK	23	100617649	Silent	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	16107160	100617649	54652911	362	74855										
NXF5	0	genome.wustl.edu	37	chrX	101091732	101091732	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ttgcggccagaggtagtgatGaaggtccacatgaaggcaag	15	7	0	4			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	101091732	101091732	G	A	SNP	NXF5	ENST00000263032	human	ensembl	69_37n	-1	known	missense	c.1154	p.S385L	0.732	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952	115	0	0	60	39	39.39	-	-	-	A	101091732	G	A	101091732	3	1	925	1	0	0	0	0	1	0	0	0	10859	1305	45	2		2	NXF5	23	101091732	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	474083	101091732	54178828	363	74856										
MORF4L2	0	genome.wustl.edu	37	chrX	102931367	102931367	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctcaaatttgtagagcagctGagtgcccaacatcacattga	8	10	2	3			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	102931367	102931367	G	A	SNP	MORF4L2	ENST00000360458	human	ensembl	69_37n	-1	known	nonsense	c.589	p.Q197*	1.000	pfam_MRG	pfam_MRG,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562	60	0	0	43	7	14	-	-	-	A	102931367	G	A	102931367	4	1	925	1	0	0	0	0	0	1	0	0	9779	1299	45	2	281	2	MORF4L2	23	102931367	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1839635	102931367	52339193	364	74857										
COL4A6	0	genome.wustl.edu	37	chrX	107400447	107400447	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	cctctaggcaggagccaggtGagaccagggactggcctcca	14	13	1	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	107400447	107400447	G	T	SNP	COL4A6	ENST00000372216	human	ensembl	69_37n	-1	known	nonsense	c.4859	p.S1620*	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	24	0	0	21	4	16	-	-	-	T	107400447	G	T	107400447	4	4	925	1	0	0	0	0	0	1	0	0	3725	1294	45	2	220	2	COL4A6	23	107400447	Nonsense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	4469080	107400447	47870113	365	74858										
COL4A5	0	genome.wustl.edu	37	chrX	107840778	107840778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aggatggattgccagggcttCctggcccgaaaggagagcct	15	10	0	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	107840778	107840778	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	1	known	missense	c.1759	p.P587S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	33	0	0	26	14	35	-	-	-	T	107840778	C	T	107840778	3	4	925	1	0	0	0	0	1	0	0	0	3724	855	30	2	1853	2	COL4A5	23	107840778	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	440331	107840778	47429782	366	74859										
DOCK11	0	genome.wustl.edu	37	chrX	117770339	117770339	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aacttactggaataaagtatCacctcaggagctcataaaca	6	9	3	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	117770339	117770339	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.3917	p.S1306L	0.990	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	81	0	0	57	10	14.93	-	-	-	T	117770339	C	T	117770339	3	4	925	1	0	0	0	0	1	0	0	0	4721	838	29	2	4059	2	DOCK11	23	117770339	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9929561	117770339	37500221	367	74860										
RHOXF2B	0	genome.wustl.edu	37	chrX	119211054	119211054	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctgccgctggtgccctcgagGtttccttcccataggtggcc	12	15	0	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	119211054	119211054	G	T	SNP	RHOXF2B	ENST00000371402	human	ensembl	69_37n	-1	known	missense	c.279	p.N93K	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2B	HGNC	ENSG00000203989	33	0	0	28	7	20	-	-	-	T	119211054	G	T	119211054	3	4	925	1	0	0	0	0	1	0	0	0	13433	1252	44	4	599	4	RHOXF2B	23	119211054	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	1440715	119211054	36059506	368	74861										
GRIA3	0	genome.wustl.edu	37	chrX	122598762	122598762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatgtggtcttacatgaaatCagcggagccatctgtgttta	10	7	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	122598762	122598762	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.2123	p.S708L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	28	0	0	31	7	18.42	-	-	-	T	122598762	C	T	122598762	3	4	925	1	0	0	0	0	1	0	0	0	6820	838	29	2	2173	2	GRIA3	23	122598762	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	3387708	122598762	32671798	369	74862										
HS6ST2	0	genome.wustl.edu	37	chrX	131762563	131762563	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tcctgatgctctttctgcctCataaactgatacctctgcaa	5	13	4	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	131762563	131762563	C	T	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1626	p.M542I	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	58	0	0	60	21	25.93	-	-	-	T	131762563	C	T	131762563	3	4	925	1	0	0	0	0	1	0	0	0	7422	826	29	2	315	2	HS6ST2	23	131762563	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	9163801	131762563	23507997	370	74863										
FAM127B	0	genome.wustl.edu	37	chrX	134185808	134185808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	tctcccggcctagaagtcctCgtcctcctcccatccaaaga	6	18	1	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	134185808	134185808	C	T	SNP	FAM127B	ENST00000370775	human	ensembl	69_37n	-1	known	missense	c.331	p.E111K	0.998	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950	47	0	0	29	12	29.27	-	-	-	T	134185808	C	T	134185808	3	4	925	1	0	0	0	0	1	0	0	0	5472	893	31	1	78	1	FAM127B	23	134185808	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	2423245	134185808	21084752	371	74864										
LDOC1	0	genome.wustl.edu	37	chrX	140270786	140270786	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	ctaataatcatcctcctcttCttcgtcgtcgtcgtcttcgt	5	14	4	0			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	140270786	140270786	C	T	SNP	LDOC1	ENST00000370526	human	ensembl	69_37n	-1	known	missense	c.421	p.E141K	0.031	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195	51	0	0	44	11	20	-	-	-	T	140270786	C	T	140270786	3	4	925	1	0	0	0	0	1	0	0	0	8763	922	32	2	23	2	LDOC1	23	140270786	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	6084978	140270786	14999774	372	74865										
IDS	0	genome.wustl.edu	37	chrX	148568837	148568837	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	aatcaggtatttgtcctcatGaggaaacctttaaaaaagaa	7	6	2	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	148568837	148568837	G	A	SNP	IDS	ENST00000370441	human	ensembl	69_37n	-1	known	silent	c.1014	p.L338	0.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	41	0	0	25	9	26.47	-	-	-	A	148568837	G	A	148568837	2	1	925	1	0	0	0	0	0	0	0	1	7557	1277	45	2		2	IDS	23	148568837	Silent	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	8298051	148568837	6701723	373	74866										
NSDHL	0	genome.wustl.edu	37	chrX	152014897	152014897	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	agcagttagcgagccaatgaGagaccaagtcgcacggactc	12	11	0	2			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	152014897	152014897	G	A	SNP	NSDHL	ENST00000370274	human	ensembl	69_37n	1	known	missense	c.29	p.R10K	0.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383	54	0	0	32	9	21.95	-	-	-	A	152014897	G	A	152014897	3	1	925	1	0	0	0	0	1	0	0	0	10743	942	33	2	31	2	NSDHL	23	152014897	Missense_Mutation	SNP	G	TCGA-GM-A2D9-01A-11D-A18P-09	3446060	152014897	3255663	374	74867										
MPP1	0	genome.wustl.edu	37	chrX	154012325	154012325	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.626666666666667	235	1.5413849703617e-103	4.58037751452171	5.14880502193314	4.30123900641787	1.03985408002723e-07	1.35296803685147e-05	184	atcagcaccagggtcttcctCttgaatgcagggagccgaac	11	12	3	1			TCGA-GM-A2D9-01A-11D-A18P-09	TCGA-GM-A2D9-11A-42D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e314f3c-88c6-4453-96a7-5d616f1c4e9b	1d25f976-3635-49f6-8d0b-f1501be6b0f4	X	154012325	154012325	C	G	SNP	MPP1	ENST00000369534	human	ensembl	69_37n	-1	known	missense	c.843	p.K281N	1.000	smart_Guanylate_kin/L-typ_Ca_channel	pfam_Guanylate_kin,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP1	HGNC	ENSG00000130830	69	0	0	29	13	30.95	-	-	-	G	154012325	C	G	154012325	3	3	925	1	0	0	0	0	1	0	0	0	9805	912	32	2	577	2	MPP1	23	154012325	Missense_Mutation	SNP	C	TCGA-GM-A2D9-01A-11D-A18P-09	1997428	154012325	1258235	375	74868										
FAF1	0	genome.wustl.edu	37	chr1	50907189	50907189	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tgatttatttgggtccagttGagttacctaaaaagatgaag	10	4	0	4			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	1	50907189	50907189	G	A	SNP	FAF1	ENST00000371778	human	ensembl	69_37n	-1	known	nonsense	c.1876	p.Q626*	1.000	pfam_UBX,smart_UBX,pfscan_UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	56	0	0	31	7	18.42	-	-	-	A	50907189	G	A	50907189	4	1	926	1	0	0	0	0	0	1	0	0	5409	1299	45	2	80	2	FAF1	1	50907189	Nonsense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		50907189	198343432	1	74869										
PKP1	0	genome.wustl.edu	37	chr1	201282596	201282596	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	aagaagtgccctgtgcgcccGccctcttgtgcctccaagca	10	16	1	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	1	201282596	201282596	G	A	SNP	PKP1	ENST00000263946	human	ensembl	69_37n	1	known	silent	c.609	p.P203	0.141	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	65	0	0	22	10	31.25	-	-	-	A	201282596	G	A	201282596	2	1	926	1	0	0	0	0	0	0	0	1	12058	1074	38	1		1	PKP1	1	201282596	Silent	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09	150375407	201282596	47968025	2	74870										
FAM71A	0	genome.wustl.edu	37	chr1	212799872	212799872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	ccacatggcagagatgtgaaCgtcatggctaagatggcgga	14	8	1	3			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	1	212799872	212799872	C	T	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	1	known	silent	c.1653	p.N551	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	50	0	0	24	4	14.29	-	-	-	T	212799872	C	T	212799872	2	4	926	1	0	0	0	0	0	0	0	1	5652	535	19	1		1	FAM71A	1	212799872	Silent	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09	11517276	212799872	36450749	3	74871										
HPCAL1	0	genome.wustl.edu	37	chr2	10560114	10560114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	accttcgacaccaacggcgaCggcaccatcgacttccggga	10	16	0	0			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	2	10560114	10560114	C	T	SNP	HPCAL1	ENST00000307845	human	ensembl	69_37n	1	known	silent	c.231	p.D77	0.908	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756	63	0	0	24	12	33.33	-	-	-	T	10560114	C	T	10560114	2	4	926	1	0	0	0	0	0	0	0	1	7381	535	19	1		1	HPCAL1	2	10560114	Silent	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09		10560114	232639259	4	74872										
RAB3GAP1	0	genome.wustl.edu	37	chr2	135848655	135848655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	cagtcactcatcattatcttGtacaagagtccactgataaa	5	10	4	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	2	135848655	135848655	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	69_37n	1	known	missense	c.238	p.V80I	1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839	109	0	0	26	13	33.33	-	-	-	A	135848655	G	A	135848655	3	1	926	1	0	0	0	0	1	0	0	0	13018	1377	48	4	252	4	RAB3GAP1	2	135848655	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09	125288541	135848655	107350718	5	74873										
KAT2B	0	genome.wustl.edu	37	chr3	20193909	20193910	+	Frame_Shift_Ins	INS	-	-	A													0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	acttacagcgagtctttaccINSaattgcaaagagtacaaccc							TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	3	20193909	20193910	-	A	INS	KAT2B	ENST00000263754	human	ensembl	69_37n	1	known	frame_shift_ins	c.2391_2392	p.N797fs	1.000:1.000	pirsf_Hist_acetylase_PCAF,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	59	0	0	19	10	34.48	-	-	-	A	20193910	-	A	20193909	7	5	926	1	0	1	1	0	0	0	0	0	8036	581	21	0	2461	0	KAT2B	3	20193909	Frame_Shift_Ins	INS	-	TCGA-GM-A2DA-01A-11D-A18P-09		20193909	177828521	6	74874										
MAPK10	0	genome.wustl.edu	37	chr4	87028414	87028414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	cttcatgaggaccagctcccGgtacgctctcttggcatgtg	11	13	2	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	4	87028414	87028414	G	C	SNP	MAPK10	ENST00000359221	human	ensembl	69_37n	-1	known	missense	c.328	p.R110G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK10	HGNC	ENSG00000109339	171	1	0.58	43	22	33.85	-	-	-	C	87028414	G	C	87028414	3	2	926	1	0	0	0	0	1	0	0	0	9343	1115	39	3	1111	3	MAPK10	4	87028414	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		87028414	104125862	7	74875										
C5orf42	0	genome.wustl.edu	37	chr5	37187668	37187668	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	acaagaatcaaactccacttCaaggtcctaaaaggatattg	6	9	2	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	5	37187668	37187668	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.3928	p.E1310K	0.048	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	77	0	0	23	7	22.58	-	-	-	T	37187668	C	T	37187668	3	4	926	1	0	0	0	0	1	0	0	0	2322	835	29	2	5785	2	C5orf42	5	37187668	Missense_Mutation	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09		37187668	143727592	8	74876										
THG1L	0	genome.wustl.edu	37	chr5	157166415	157166415	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	acccggaccaggacaaagccAgtgcccttgcactgcgatat	10	14	0	0			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	5	157166415	157166415	A	T	SNP	THG1L	ENST00000231198	human	ensembl	69_37n	1	known	silent	c.822	p.P274	0.006	pfam_tRNAHis_GuaTrfase_cat,pirsf_tRNAHis_GuaTrfase_Thg1	pfam_tRNAHis_GuaTrfase_cat,superfamily_Restrct_endonuc-II-like,pirsf_tRNAHis_GuaTrfase_Thg1	-	no_errors	THG1L	HGNC	ENSG00000113272	56	0	0	15	6	28.57	-	-	-	T	157166415	A	T	157166415	2	4	926	1	0	0	0	0	0	0	0	1	15956	175	7	5		5	THG1L	5	157166415	Silent	SNP	A	TCGA-GM-A2DA-01A-11D-A18P-09	119978747	157166415	23748845	9	74877										
MYO6	0	genome.wustl.edu	37	chr6	76596584	76596584	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tgatggtctggttaaggtggGcacactgaaaaaacgacttg	13	6	1	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	6	76596584	76596584	G	A	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.2531	p.G844D	1.000	NULL	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	73	0	0	24	7	22.58	-	-	-	A	76596584	G	A	76596584	3	1	926	1	0	0	0	0	1	0	0	0	10153	1203	42	4	2625	4	MYO6	6	76596584	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		76596584	94518483	10	74878										
MUC17	0	genome.wustl.edu	37	chr7	100676392	100676392	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	agcataccaacctcaactccTagtgaaggaagcactccatt	6	13	1	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	7	100676392	100676392	T	C	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.1695	p.P565	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	181	0	0	43	13	23.21	-	-	-	C	100676392	T	C	100676392	2	2	926	1	0	0	0	0	0	0	0	1	10046	1509	53	5		5	MUC17	7	100676392	Silent	SNP	T	TCGA-GM-A2DA-01A-11D-A18P-09		100676392	58462271	11	74879										
CDH17	0	genome.wustl.edu	37	chr8	95183115	95183115	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tctcggtccaagggctgagtCacgtaaatatctccttcctg	9	12	3	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	8	95183115	95183115	C	A	SNP	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	silent	c.882	p.V294	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	132	0	0	49	25	33.78	-	-	-	A	95183115	C	A	95183115	2	1	926	1	0	0	0	0	0	0	0	1	3131	813	29	2		2	CDH17	8	95183115	Silent	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09		95183115	51180907	12	74880										
LRP12	0	genome.wustl.edu	37	chr8	105510194	105510194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tttggcacagatctcttcatCggaactatctccacattcat	5	12	4	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	8	105510194	105510194	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.529	p.D177N	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	91	0	0	44	24	35.29	-	-	-	T	105510194	C	T	105510194	3	4	926	1	0	0	0	0	1	0	0	0	9020	884	31	1	2005	1	LRP12	8	105510194	Missense_Mutation	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09	10327079	105510194	40853828	13	74881										
OLFML2A	0	genome.wustl.edu	37	chr9	127549306	127549306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	ctcggagggctccgactgccGttgcaagtgcatcatgcggc	14	13	1	0			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	9	127549306	127549306	G	A	SNP	OLFML2A	ENST00000373580	human	ensembl	69_37n	1	known	missense	c.143	p.R48H	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	55	0	0	18	10	35.71	-	-	-	A	127549306	G	A	127549306	3	1	926	1	0	0	0	0	1	0	0	0	10930	1145	40	1	149	1	OLFML2A	9	127549306	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		127549306	13664125	14	74882										
PDLIM1	0	genome.wustl.edu	37	chr10	97007096	97007096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	gattctttgtcgatgacaagGctgcttggaggctgagcatg	14	7	1	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	10	97007096	97007096	G	C	SNP	PDLIM1	ENST00000329399	human	ensembl	69_37n	-1	known	missense	c.561	p.S187R	0.096	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM1	HGNC	ENSG00000107438	90	0	0	25	16	38.1	-	-	-	C	97007096	G	C	97007096	3	2	926	1	0	0	0	0	1	0	0	0	11752	1194	42	4	440	4	PDLIM1	10	97007096	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		97007096	38527651	15	74883										
TMPRSS5	0	genome.wustl.edu	37	chr11	113570327	113570327	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	cagcactgacctaggagccaTgagccaacacctgcaccggc	10	16	0	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	11	113570327	113570327	T	G	SNP	TMPRSS5	ENST00000299882	human	ensembl	69_37n	-1	known	silent	c.195	p.S65	0.155	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS5	HGNC	ENSG00000166682	62	0	0	20	5	20	-	-	-	G	113570327	T	G	113570327	2	3	926	1	0	0	0	0	0	0	0	1	16345	1451	51	5		5	TMPRSS5	11	113570327	Silent	SNP	T	TCGA-GM-A2DA-01A-11D-A18P-09		113570327	21436189	16	74884										
ARHGEF12	0	genome.wustl.edu	37	chr11	120317216	120317216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	aaaggcacttagaagattttCggtaagcttagtggtagata	11	4	0	3			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	11	120317216	120317216	C	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	1	known	missense	c.1393	p.R465W	1.000	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	80	0	0	20	7	25.93	-	-	-	T	120317216	C	T	120317216	3	4	926	1	0	0	0	0	1	0	0	0	899	898	31	1	1516	1	ARHGEF12	11	120317216	Missense_Mutation	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09	6746889	120317216	14689300	17	74885										
C12orf5	0	genome.wustl.edu	37	chr12	4458991	4458991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	gtcttgattttcagaccatgCatggaattttggagagaagc	11	6	2	3			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	12	4458991	4458991	C	A	SNP	C12orf5	ENST00000179259	human	ensembl	69_37n	1	known	missense	c.199	p.H67N	0.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	C12orf5	HGNC	ENSG00000078237	56	0	0	29	8	21.62	-	-	-	A	4458991	C	A	4458991	3	1	926	1	0	0	0	0	1	0	0	0	1706	710	25	4	213	4	C12orf5	12	4458991	Missense_Mutation	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09		4458991	129392904	18	74886										
AKAP3	0	genome.wustl.edu	37	chr12	4737717	4737717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	acttcatctactgaactcccGttgccaagttgggccctggg	10	13	2	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	12	4737717	4737717	G	A	SNP	AKAP3	ENST00000228850	human	ensembl	69_37n	-1	known	silent	c.351	p.N117	0.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254	79	0	0	31	14	31.11	-	-	-	A	4737717	G	A	4737717	2	1	926	1	0	0	0	0	0	0	0	1	452	1136	40	1		1	AKAP3	12	4737717	Silent	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09	278726	4737717	129114178	19	74887										
GPC5	0	genome.wustl.edu	37	chr13	92101096	92101096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	gagatatcagattgcggctcGccaggatatgcagcagtttc	12	9	1	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	13	92101096	92101096	G	C	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	1	known	missense	c.245	p.R82P	0.047	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	68	0	0	36	10	21.74	-	-	-	C	92101096	G	C	92101096	3	2	926	1	0	0	0	0	1	0	0	0	6651	1087	38	3	251	3	GPC5	13	92101096	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		92101096	23068782	20	74888										
CHD8	0	genome.wustl.edu	37	chr14	21869629	21869629	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tttgccaaaagttggggtcaTccaaagaaatatctgtcctg	9	8	2	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	14	21869629	21869629	T	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.4106	p.D1369V	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	75	0	0	25	7	21.88	-	-	-	A	21869629	T	A	21869629	3	1	926	1	0	0	0	0	1	0	0	0	3360	1435	50	5	3711	5	CHD8	14	21869629	Missense_Mutation	SNP	T	TCGA-GM-A2DA-01A-11D-A18P-09		21869629	85479911	21	74889										
LGMN	0	genome.wustl.edu	37	chr14	93178044	93178044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	cgtggctggtgttggtgtgcGattttaccaggtggtactgc	16	7	0	0			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	14	93178044	93178044	G	A	SNP	LGMN	ENST00000334869	human	ensembl	69_37n	-1	known	missense	c.779	p.S260L	0.086	pfam_Peptidase_C13	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600	135	0	0	43	17	27.87	-	-	-	A	93178044	G	A	93178044	3	1	926	1	0	0	0	0	1	0	0	0	8810	1059	37	1	542	1	LGMN	14	93178044	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09	71308415	93178044	14171496	22	74890										
KIAA0100	0	genome.wustl.edu	37	chr17	26962549	26962549	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	tagtaggtctcggcactgtaGagtggccaggacatgctggt	15	8	1	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	17	26962549	26962549	G	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	missense	c.2056	p.L686V	0.010	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	41	0	0	11	76	87.36	-	-	-	C	26962549	G	C	26962549	3	2	926	1	0	0	0	0	1	0	0	0	8206	933	33	2	4747	2	KIAA0100	17	26962549	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		26962549	54232661	23	74891										
ZSCAN22	0	genome.wustl.edu	37	chr19	58850657	58850657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	gtcgtagctcagccctgatgGttcacttgcggatccacatc	10	13	2	1			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	19	58850657	58850657	G	T	SNP	ZSCAN22	ENST00000329665	human	ensembl	69_37n	1	known	missense	c.1441	p.V481F	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN22	HGNC	ENSG00000182318	46	0	0	14	7	33.33	-	-	-	T	58850657	G	T	58850657	3	4	926	1	0	0	0	0	1	0	0	0	18326	1261	44	4	1447	4	ZSCAN22	19	58850657	Missense_Mutation	SNP	G	TCGA-GM-A2DA-01A-11D-A18P-09		58850657	278326	24	74892										
IFT52	0	genome.wustl.edu	37	chr20	42271138	42271138	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	ggtactgaagaagacctggaAttttatgtcaggaagtgtgg	14	4	1	3			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	20	42271138	42271138	A	G	SNP	IFT52	ENST00000373030	human	ensembl	69_37n	1	known	silent	c.1140	p.E380	1.000	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	104	0	0	28	8	21.62	-	-	-	G	42271138	A	G	42271138	2	3	926	1	0	0	0	0	0	0	0	1	7615	98	4	5		5	IFT52	20	42271138	Silent	SNP	A	TCGA-GM-A2DA-01A-11D-A18P-09		42271138	20754382	25	74893										
AFF2	0	genome.wustl.edu	37	chrX	147743964	147743964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.115384615384615	3	0.810855851024004	1.22337042925278	1.73310810810811	1.06652806652807	1	1	0	aatctttcaatccaattcacCggaagaatctgaattcgccg	6	11	4	2			TCGA-GM-A2DA-01A-11D-A18P-09	TCGA-GM-A2DA-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9e036b90-1cb2-4cb8-857d-09f2ca48e059	073ca5ca-7062-4b02-b5f4-49dbe64aa329	X	147743964	147743964	C	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	1	known	missense	c.716	p.P239L	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	56	0	0	21	15	41.67	-	-	-	T	147743964	C	T	147743964	3	4	926	1	0	0	0	0	1	0	0	0	357	652	23	1	726	1	AFF2	23	147743964	Missense_Mutation	SNP	C	TCGA-GM-A2DA-01A-11D-A18P-09		147743964	7526596	26	74894										
C1orf50	0	genome.wustl.edu	37	chr1	43240518	43240518	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cgggagagtggtcagcagtaTttttccatcatttctccaaa	9	9	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	43240518	43240518	T	G	SNP	C1orf50	ENST00000372525	human	ensembl	69_37n	1	known	nonsense	c.393	p.Y131*	0.999	pfam_DUF2452	pfam_DUF2452,superfamily_Cytidine_deaminase-like	-	no_errors	C1orf50	HGNC	ENSG00000164008	52	0	0	43	6	12.24	-	-	-	G	43240518	T	G	43240518	4	3	927	1	0	0	0	0	0	1	0	0	2062	1500	52	5	407	5	C1orf50	1	43240518	Nonsense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09		43240518	206010103	1	74895										
SLC2A1	0	genome.wustl.edu	37	chr1	43396749	43396749	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttaacgaaaaggcccacagaGaaggagccaatcatgccccc	9	13	1	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	43396749	43396749	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	69_37n	-1	known	silent	c.243	p.F81	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394	73	0	0	56	11	16.42	-	-	-	A	43396749	G	A	43396749	2	1	927	1	0	0	0	0	0	0	0	1	14627	933	33	2		2	SLC2A1	1	43396749	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	156231	43396749	205853872	2	74896										
CYP4A11	0	genome.wustl.edu	37	chr1	47395875	47395875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	atttcaacacaagtcgtgcaAtggggatggggatcctggtg	14	7	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	47395875	47395875	A	G	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.1475	p.I492T	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	85	0	0	54	10	15.62	-	-	-	G	47395875	A	G	47395875	3	3	927	1	0	0	0	0	1	0	0	0	4214	101	4	5	91	5	CYP4A11	1	47395875	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	3999126	47395875	201854746	3	74897										
ZNF644	0	genome.wustl.edu	37	chr1	91404518	91404518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtctgtgatctttgaagcttTcaggccttttggcgtcaggc	12	9	4	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	91404518	91404518	T	C	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	missense	c.2393	p.E798G	0.989	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	36	0	0	31	8	20.51	-	-	-	C	91404518	T	C	91404518	3	2	927	1	0	0	0	0	1	0	0	0	18156	1783	62	5	1606	5	ZNF644	1	91404518	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	44008643	91404518	157846103	4	74898										
HSD3B2	0	genome.wustl.edu	37	chr1	119962135	119962135	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	caggacgtctcggtcgtcatCcacaccgcctgtatcattga	9	14	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	119962135	119962135	C	G	SNP	HSD3B2	ENST00000369416	human	ensembl	69_37n	1	known	missense	c.237	p.I79M	0.946	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	76	0	0	51	21	29.17	-	-	-	G	119962135	C	G	119962135	3	3	927	1	0	0	0	0	1	0	0	0	7442	845	30	2	243	2	HSD3B2	1	119962135	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	28557617	119962135	129288486	5	74899										
NES	0	genome.wustl.edu	37	chr1	156641877	156641877	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttgttctcatcttcaagagaCctcaggggttcctgattctc	8	11	5	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	156641877	156641877	C	A	SNP	NES	ENST00000368223	human	ensembl	69_37n	-1	known	missense	c.2103	p.R701S	0.016	NULL	pfam_F	-	no_errors	NES	HGNC	ENSG00000132688	63	0	0	71	8	10.13	-	-	-	A	156641877	C	A	156641877	3	1	927	1	0	0	0	0	1	0	0	0	10409	506	18	4	2766	4	NES	1	156641877	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	36679742	156641877	92608744	6	74900										
ASPM	0	genome.wustl.edu	37	chr1	197112485	197112485	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aaagttgaagaacagttgggGgtaagactaagtttactatt	11	3	0	3			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	197112485	197112485	G	T	SNP	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	silent	c.897	p.T299	0.085	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	47	0	0	28	15	34.88	-	-	-	T	197112485	G	T	197112485	2	4	927	1	0	0	0	0	0	0	0	1	1060	1219	43	4		4	ASPM	1	197112485	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	40470608	197112485	52138136	7	74901										
SOX13	0	genome.wustl.edu	37	chr1	204085649	204085649	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gagcagggacccaagagagcCtagcagagaaggagctccag	15	10	0	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	204085649	204085649	C	A	SNP	SOX13	ENST00000367204	human	ensembl	69_37n	1	known	missense	c.433	p.L145I	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX13	HGNC	ENSG00000143842	53	0	0	36	20	35.71	-	-	-	A	204085649	C	A	204085649	3	1	927	1	0	0	0	0	1	0	0	0	15033	680	24	4	447	4	SOX13	1	204085649	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	6973164	204085649	45164972	8	74902										
LYST	0	genome.wustl.edu	37	chr1	235940493	235940493	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	agatgctctgaacttcttttGagctgaagggtctttgagag	12	6	3	5			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	235940493	235940493	G	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	nonsense	c.5330	p.S1777*	0.987	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	151	0	0	95	17	15.18	-	-	-	C	235940493	G	C	235940493	4	2	927	1	0	0	0	0	0	1	0	0	9195	1294	45	2	6223	2	LYST	1	235940493	Nonsense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	31854844	235940493	13310128	9	74903										
EXO1	0	genome.wustl.edu	37	chr1	242015696	242015699	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttaccttctaaaaaggaagtAgagagatctagaagagagta							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	1	242015696	242015699	AGAG	-	DEL	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	frame_shift_del	c.264_267	p.E89fs	0.979:1.000:1.000:0.989	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N,prints_XPGC_Rad_DNA_repair	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	92	0	0	48	6	11.11	-	-	-	-	242015699	AGAG	-	242015696	7	5	927	1	0	1	0	1	0	0	0	0	5336	407	15	0	270	0	EXO1	1	242015696	Frame_Shift_Del	DEL	AGAG	TCGA-GM-A2DB-01A-31D-A19Y-09	6075203	242015696	7234925	10	74904										
FSHR	0	genome.wustl.edu	37	chr2	49210108	49210108	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	taggcaattcttctaaattaTtattatcgcttagattcctg	5	7	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	2	49210108	49210108	T	A	SNP	FSHR	ENST00000406846	human	ensembl	69_37n	-1	known	missense	c.611	p.N204I	0.965	pfam_Leu-rich_rpt,prints_FSH_rcpt,prints_TSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_supfam,prints_FSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820	57	0	0	44	19	30.16	-	-	-	A	49210108	T	A	49210108	3	1	927	1	0	0	0	0	1	0	0	0	6122	1493	52	5	1488	5	FSHR	2	49210108	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09		49210108	193989265	11	74905										
RTN4	0	genome.wustl.edu	37	chr2	55253974	55253974	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	atctgcaaaacattttttatCcactttactttccaagttgc	3	10	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	2	55253974	55253974	C	G	SNP	RTN4	ENST00000337526	human	ensembl	69_37n	-1	known	missense	c.1261	p.D421H	0.985	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310	114	0	0	95	29	23.39	-	-	-	G	55253974	C	G	55253974	3	3	927	1	0	0	0	0	1	0	0	0	13814	855	30	2	2383	2	RTN4	2	55253974	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	6043866	55253974	187945399	12	74906										
ASNSD1	0	genome.wustl.edu	37	chr2	190531309	190531309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tttggcattttagtaatttgGgcaagagtttctgcctctct	9	7	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	2	190531309	190531309	G	T	SNP	ASNSD1	ENST00000260952	human	ensembl	69_37n	1	known	missense	c.451	p.G151C	0.000	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381	46	0	0	49	12	19.67	-	-	-	T	190531309	G	T	190531309	3	4	927	1	0	0	0	0	1	0	0	0	1053	1232	43	4	453	4	ASNSD1	2	190531309	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	135277335	190531309	52668064	13	74907										
ANKAR	0	genome.wustl.edu	37	chr2	190602503	190602503	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ggaaagtggaataatgaccaTatctatttttgaacgttttc	8	5	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	2	190602503	190602503	T	C	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.3518	p.I1173T	0.370	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	44	0	0	39	6	13.33	-	-	-	C	190602503	T	C	190602503	3	2	927	1	0	0	0	0	1	0	0	0	623	1406	49	5	3584	5	ANKAR	2	190602503	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	71194	190602503	52596870	14	74908										
FN1	0	genome.wustl.edu	37	chr2	216236841	216236841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gatttcctcacctacattcgGcgggtatggtcttggcctat	10	11	2	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	2	216236841	216236841	G	T	SNP	FN1	ENST00000354785	human	ensembl	69_37n	-1	known	missense	c.6505	p.P2169T	0.992	NULL	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	102	0	0	73	18	19.78	-	-	-	T	216236841	G	T	216236841	3	4	927	1	0	0	0	0	1	0	0	0	6008	1203	42	4	956	4	FN1	2	216236841	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	25634338	216236841	26962532	15	74909										
WDR6	0	genome.wustl.edu	37	chr3	49050384	49050384	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	agatctcagccgcaccctctGgcaaggccatctttgtcaag	9	14	4	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	3	49050384	49050384	G	C	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.1507	p.G503R	0.904	superfamily_Quino_amine_DH_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	44	0	0	26	17	39.53	-	-	-	C	49050384	G	C	49050384	3	2	927	1	0	0	0	0	1	0	0	0	17407	1348	47	4	1513	4	WDR6	3	49050384	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09		49050384	148972046	16	74910										
ABHD10	0	genome.wustl.edu	37	chr3	111700647	111700647	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttagcttgtagacaaaagacGtcactctcattccttaatcg	6	10	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	3	111700647	111700647	G	A	SNP	ABHD10	ENST00000273359	human	ensembl	69_37n	1	known	silent	c.159	p.T53	0.998	NULL	pfam_AB_hydrolase_1,pfam_Peptidase_S9	-	no_errors	ABHD10	HGNC	ENSG00000144827	66	0	0	54	10	15.62	-	-	-	A	111700647	G	A	111700647	2	1	927	1	0	0	0	0	0	0	0	1	74	1132	40	1		1	ABHD10	3	111700647	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	62650263	111700647	86321783	17	74911										
ZBTB38	0	genome.wustl.edu	37	chr3	141162042	141162042	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gaagccaaagacattctccaTaccacaggattcggattcag	8	11	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	3	141162042	141162042	T	G	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	1	known	missense	c.815	p.I272R	0.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	41	0	0	22	8	26.67	-	-	-	G	141162042	T	G	141162042	3	3	927	1	0	0	0	0	1	0	0	0	17635	1406	49	5	814	5	ZBTB38	3	141162042	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	29461395	141162042	56860388	18	74912										
ZBBX	0	genome.wustl.edu	37	chr3	166958696	166958696	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aagactgaattttggtatctCttccagaacagctgaaaata	7	7	1	4			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	3	166958696	166958696	C	G	SNP	ZBBX	ENST00000307529	human	ensembl	69_37n	-1	known	missense	c.2405	p.R802T	0.986	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064	77	0	0	48	29	37.66	-	-	-	G	166958696	C	G	166958696	3	3	927	1	0	0	0	0	1	0	0	0	17613	913	32	2	118	2	ZBBX	3	166958696	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	25796654	166958696	31063734	19	74913										
TACC3	0	genome.wustl.edu	37	chr4	1725222	1725222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aaattgcgacttcctgttttCgccaccagaagttaccggaa	8	11	0	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	4	1725222	1725222	C	T	SNP	TACC3	ENST00000313288	human	ensembl	69_37n	1	known	missense	c.74	p.S25L	0.021	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810	62	0	0	20	7	25.93	-	-	-	T	1725222	C	T	1725222	3	4	927	1	0	0	0	0	1	0	0	0	15595	893	31	1	76	1	TACC3	4	1725222	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		1725222	189429054	20	74914										
POLR2B	0	genome.wustl.edu	37	chr4	57881680	57881681	+	Frame_Shift_Del	DEL	AG	AG	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	atatgtaggtttctatgatcAgagatattcgagagagggag							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	4	57881680	57881681	AG	-	DEL	POLR2B	ENST00000314595	human	ensembl	69_37n	1	known	frame_shift_del	c.1813_1814	p.D606fs	1.000:1.000	pfam_RNA_pol_Rpb2_4	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315	60	0	0	57	7	10.94	-	-	-	-	57881681	AG	-	57881680	7	5	927	1	0	1	0	1	0	0	0	0	12289	180	7	0	1867	0	POLR2B	4	57881680	Frame_Shift_Del	DEL	AG	TCGA-GM-A2DB-01A-31D-A19Y-09	56156458	57881680	133272596	21	74915										
ADAMTS6	0	genome.wustl.edu	37	chr5	64521997	64521997	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gcaggagcacgttcagtgtaGaaattataaccttcagccaa	9	9	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	64521997	64521997	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	silent	c.1983	p.F661	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	58	0	0	40	6	13.04	-	-	-	A	64521997	G	A	64521997	2	1	927	1	0	0	0	0	0	0	0	1	270	933	33	2		2	ADAMTS6	5	64521997	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09		64521997	116393263	22	74916										
BDP1	0	genome.wustl.edu	37	chr5	70858139	70858139	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gggatttttatctttaatatGctcaaagaatagtttggagt	9	3	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	70858139	70858139	G	C	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	missense	c.7535	p.C2512S	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	58	0	0	41	9	18	-	-	-	C	70858139	G	C	70858139	3	2	927	1	0	0	0	0	1	0	0	0	1399	1319	46	4	7685	4	BDP1	5	70858139	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	6336142	70858139	110057121	23	74917										
HMGCR	0	genome.wustl.edu	37	chr5	74646180	74646180	+	Missense_Mutation	SNP	A	A	T													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	taagccgaatcctgtaactcAgagggtcaagatgattatgg							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	74646180	74646180	A	T	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	missense	c.761	p.Q254L	1.000	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	36	0	0	29	13	30.95	-	-	-	T	74646180	A	T	74646180	3	4	927	1	0	0	0	0	1	0	0	0	7282	188	7	5	787	5	HMGCR	5	74646180	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	3788041	74646180	106269080	24	74918	524	2								
HMGCR	0	genome.wustl.edu	37	chr5	74646181	74646181	+	Missense_Mutation	SNP	G	G	C													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aagccgaatcctgtaactcaGagggtcaagatgattatggt							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	74646181	74646181	G	C	SNP	HMGCR	ENST00000287936	human	ensembl	69_37n	1	known	missense	c.762	p.Q254H	1.000	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161	35	0	0	29	13	30.95	-	-	-	C	74646181	G	C	74646181	3	2	927	1	0	0	0	0	1	0	0	0	7282	933	33	2	788	2	HMGCR	5	74646181	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	1	74646181	106269079	25	74919	524	2								
VCAN	0	genome.wustl.edu	37	chr5	82834915	82834915	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtgcttcccagtgctgtgcaAaagttttctggtacagcttc	10	10	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	82834915	82834915	A	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	1	known	missense	c.6093	p.Q2031H	0.003	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	75	0	0	44	7	13.73	-	-	-	T	82834915	A	T	82834915	3	4	927	1	0	0	0	0	1	0	0	0	17235	11	1	5	6119	5	VCAN	5	82834915	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	8188734	82834915	98080345	26	74920										
RAPGEF6	0	genome.wustl.edu	37	chr5	130840456	130840456	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aattctccaataatcttgctGggctatgcagacaaactgtc	7	10	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	130840456	130840456	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	nonsense	c.1117	p.Q373*	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	89	0	0	63	11	14.86	-	-	-	A	130840456	G	A	130840456	4	1	927	1	0	0	0	0	0	1	0	0	13131	1357	47	4	4246	4	RAPGEF6	5	130840456	Nonsense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	48005541	130840456	50074804	27	74921										
PCDHGA11	0	genome.wustl.edu	37	chr5	140801206	140801206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cccccagcttccaggaggacGaagtggagataaaagtcagt	12	10	1	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	5	140801206	140801206	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	1	known	missense	c.412	p.E138K	0.460	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	35	0	0	29	5	14.71	-	-	-	A	140801206	G	A	140801206	3	1	927	1	0	0	0	0	1	0	0	0	11625	1059	37	1	414	1	PCDHGA11	5	140801206	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	9960750	140801206	40114054	28	74922										
KIAA1244	0	genome.wustl.edu	37	chr6	138599709	138599709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ctcaacctgaagctctcccaCggtgactactacaggaagcg	9	14	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	6	138599709	138599709	C	A	SNP	KIAA1244	ENST00000251691	human	ensembl	69_37n	1	known	missense	c.2250	p.H750Q	0.098	superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold,superfamily_Sec7,smart_Sec7	-	no_errors	KIAA1244	HGNC	ENSG00000112379	64	0	0	53	7	11.67	-	-	-	A	138599709	C	A	138599709	3	1	927	1	0	0	0	0	1	0	0	0	8269	535	19	3	2300	3	KIAA1244	6	138599709	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		138599709	32515358	29	74923										
BBS9	0	genome.wustl.edu	37	chr7	33407469	33407469	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tactgttcttgcttccaaaaCttctcgtaagtaaaaccatg	5	10	2	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	7	33407469	33407469	C	A	SNP	BBS9	ENST00000242067	human	ensembl	69_37n	1	known	missense	c.1784	p.T595N	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	113	0	0	118	17	12.59	-	-	-	A	33407469	C	A	33407469	3	1	927	1	0	0	0	0	1	0	0	0	1346	565	20	4	1846	4	BBS9	7	33407469	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		33407469	125731194	30	74924										
TMEM120A	0	genome.wustl.edu	37	chr7	75617649	75617649	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cagcaggaagttgaaggcagCatctgtcaccctgcggaggg	15	10	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	7	75617649	75617649	C	T	SNP	TMEM120A	ENST00000338761	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.849	-	-	-	no_errors	TMEM120A	HGNC	ENSG00000189077	38	0	0	41	12	22.64	-	-	-	T	75617649	C	T	75617649	1	4	927	0	1	0	0	0	0	0	0	0	16128	710	25	4		4	TMEM120A	7	75617649	RNA	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	42210180	75617649	83521014	31	74925										
ZNF804B	0	genome.wustl.edu	37	chr7	88956723	88956724	+	Frame_Shift_Ins	INS	-	-	A													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ctaagtcatggaaagatgagINSaaaaaacaagaaaaagcact							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	7	88956723	88956724	-	A	INS	ZNF804B	ENST00000333190	human	ensembl	69_37n	1	known	frame_shift_ins	c.315_316	p.Q107fs	0.992:1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	86	0	0	45	26	36.62	-	-	-	A	88956724	-	A	88956723	7	5	927	1	0	1	1	0	0	0	0	0	18264	933	33	0	325	0	ZNF804B	7	88956723	Frame_Shift_Ins	INS	-	TCGA-GM-A2DB-01A-31D-A19Y-09	13339074	88956723	70181940	32	74926										
LAMB4	0	genome.wustl.edu	37	chr7	107763589	107763589	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tactcaccaaggtgcaaaaaAagggtcagttgaaattgcat	9	7	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	7	107763589	107763589	A	T	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	silent	c.21	p.L7	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	89	0	0	61	11	15.28	-	-	-	T	107763589	A	T	107763589	2	4	927	1	0	0	0	0	0	0	0	1	8667	1	1	5		5	LAMB4	7	107763589	Silent	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	18806866	107763589	51375074	33	74927										
ESYT2	0	genome.wustl.edu	37	chr7	158555812	158555812	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttgtctgggtcttcatcaaaGagctcaatctctaattcttg	7	9	7	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	7	158555812	158555812	G	T	SNP	ESYT2	ENST00000251527	human	ensembl	69_37n	-1	known	silent	c.1290	p.L430	0.996	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	ESYT2	HGNC	ENSG00000117868	73	0	0	96	15	13.51	-	-	-	T	158555812	G	T	158555812	2	4	927	1	0	0	0	0	0	0	0	1	5302	929	33	2		2	ESYT2	7	158555812	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	50792223	158555812	582851	34	74928										
NKAIN3	0	genome.wustl.edu	37	chr8	63659492	63659492	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttgtctcctacccacctaggAcaccgatctaatgacattca	5	14	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	63659492	63659492	A	T	SNP	NKAIN3	ENST00000328472	human	ensembl	69_37n	1	known	missense	c.275	p.D92V	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN3	HGNC	ENSG00000185942	97	0	0	72	12	14.29	-	-	-	T	63659492	A	T	63659492	3	4	927	1	0	0	0	0	1	0	0	0	10509	289	10	5	289	5	NKAIN3	8	63659492	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09		63659492	82704530	35	74929										
RNF19A	0	genome.wustl.edu	37	chr8	101272137	101272137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tgccattgctttggtgctggCattatcactaactgttccca	8	11	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	101272137	101272137	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	missense	c.1771	p.A591T	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	47	0	0	43	9	17.31	-	-	-	T	101272137	C	T	101272137	3	4	927	1	0	0	0	0	1	0	0	0	13556	710	25	4	753	4	RNF19A	8	101272137	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	37612645	101272137	45091885	36	74930										
DCAF13	0	genome.wustl.edu	37	chr8	104438284	104438284	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aataaaacaaatatttctagGttggtgatgacaaaactgtg	8	4	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	104438284	104438284	G	C	SNP	DCAF13	ENST00000297579	human	ensembl	69_37n	1	known	missense	c.835	p.V279L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934	61	0	0	40	11	21.57	-	-	-	C	104438284	G	C	104438284	3	2	927	1	0	0	0	0	1	0	0	0	4298	1275	44	4	849	4	DCAF13	8	104438284	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	3166147	104438284	41925738	37	74931										
PKHD1L1	0	genome.wustl.edu	37	chr8	110510689	110510690	+	Splice_Site	DEL	AG	AG	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tgtttggcttatttccaaacAgagctcattaattgttggaa							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	110510689	110510690	AG	-	DEL	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	splice_site_del	c.10600-2_10600-1	e66-1	0.996:1.000	-	-	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	96	0	0	87	10	10.31	-	-	-	-	110510690	AG	-	110510689	8	5	927	1	0	1	0	1	0	0	1	0	12046	202	7	0	10860	0	PKHD1L1	8	110510689	Splice_Site	DEL	AG	TCGA-GM-A2DB-01A-31D-A19Y-09	6072405	110510689	35853333	38	74932										
PKHD1L1	0	genome.wustl.edu	37	chr8	110527423	110527423	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttctagtaggaattttctttTccacacttcaacgtttggat	6	8	3	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	110527423	110527423	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	missense	c.11578	p.S3860P	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	107	0	0	71	21	22.83	-	-	-	C	110527423	T	C	110527423	3	2	927	1	0	0	0	0	1	0	0	0	12046	1783	62	5	11864	5	PKHD1L1	8	110527423	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	16734	110527423	35836599	39	74933										
COL22A1	0	genome.wustl.edu	37	chr8	139890331	139890331	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tgcccccgtggtaggcgagaCgccgggcagccgccttgacc	15	16	0	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	8	139890331	139890331	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	missense	c.320	p.R107H	0.031	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	17	0	0	14	6	30	-	-	-	T	139890331	C	T	139890331	3	4	927	1	0	0	0	0	1	0	0	0	3711	536	19	1	4812	1	COL22A1	8	139890331	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	29362908	139890331	6473691	40	74934										
DNAI1	0	genome.wustl.edu	37	chr9	34506808	34506808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	catttacaacctcaagaagcCccactcccagccctccttct	3	19	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	9	34506808	34506808	C	T	SNP	DNAI1	ENST00000242317	human	ensembl	69_37n	1	known	missense	c.1247	p.P416L	0.946	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735	40	0	0	37	8	17.78	-	-	-	T	34506808	C	T	34506808	3	4	927	1	0	0	0	0	1	0	0	0	4644	623	22	4	1297	4	DNAI1	9	34506808	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		34506808	106706623	41	74935										
CA9	0	genome.wustl.edu	37	chr9	35674262	35674264	+	In_Frame_Del	DEL	AGA	AGA	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cctgaagttaagcctaaatcAgaagaagagggctccctgaa							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	9	35674262	35674264	AGA	-	DEL	CA9	ENST00000378357	human	ensembl	69_37n	1	known	in_frame_del	c.306_308	p.E105in_frame_del	0.103:0.045:0.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	47	0	0	35	8	17.78	-	-	-	-	35674264	AGA	-	35674262	7	5	927	1	0	1	0	1	0	0	0	0	2549	175	7	0	308	0	CA9	9	35674262	In_Frame_Del	DEL	AGA	TCGA-GM-A2DB-01A-31D-A19Y-09	1167454	35674262	105539169	42	74936										
LRSAM1	0	genome.wustl.edu	37	chr9	130250014	130250014	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtggcagcaaatggatcagaAcaaagccatcagccagatcc	10	11	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	9	130250014	130250014	A	T	SNP	LRSAM1	ENST00000300417	human	ensembl	69_37n	1	known	missense	c.1319	p.N440I	1.000	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356	60	0	0	44	7	13.73	-	-	-	T	130250014	A	T	130250014	3	4	927	1	0	0	0	0	1	0	0	0	9109	43	2	5	1381	5	LRSAM1	9	130250014	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	94575752	130250014	10963417	43	74937										
MAN1B1	0	genome.wustl.edu	37	chr9	140002075	140002075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gaccgcaaataccaggactgGggctgggagattctgcagag	15	9	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	9	140002075	140002075	G	T	SNP	MAN1B1	ENST00000371589	human	ensembl	69_37n	1	known	missense	c.1857	p.W619C	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	46	0	0	22	14	38.89	-	-	-	T	140002075	G	T	140002075	3	4	927	1	0	0	0	0	1	0	0	0	9283	1241	43	4	1903	4	MAN1B1	9	140002075	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	9752061	140002075	1211356	44	74938										
PTEN	0	genome.wustl.edu	37	chr10	89624279	89624280	+	Frame_Shift_Ins	INS	-	-	G													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aacaaaaggagatatcaagaINSggatggattcgacttagact							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	10	89624279	89624280	-	G	INS	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	frame_shift_ins	c.53_54	p.D19fs	1.000:1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	116	0	0	78	18	18.75	-	-	-	G	89624280	-	G	89624279	7	5	927	1	0	1	1	0	0	0	0	0	12818	304	11	0	55	0	PTEN	10	89624279	Frame_Shift_Ins	INS	-	TCGA-GM-A2DB-01A-31D-A19Y-09		89624279	45910468	45	74939										
PTEN	0	genome.wustl.edu	37	chr10	89692935	89692935	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aatgatatgtgcatatttatTacatcggggcaaatttttaa	7	4	0	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	10	89692935	89692935	T	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	nonsense	c.419	p.L140*	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	49	0	0	64	18	21.95	-	-	-	G	89692935	T	G	89692935	4	3	927	1	0	0	0	0	0	1	0	0	12818	1764	61	5	437	5	PTEN	10	89692935	Nonsense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	68656	89692935	45841812	46	74940										
HTRA1	0	genome.wustl.edu	37	chr10	124273729	124273729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtggtctcaaggaaaacgacGtcataatcagcatcaatgga	10	8	4	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	10	124273729	124273729	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	69_37n	1	known	missense	c.1297	p.V433I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	pfam_Peptidase_S1_S6,pfam_PDZ,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,superfamily_Pept_cys/ser_Trypsin-like,superfamily_PDZ,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	84	0	0	75	22	22.68	-	-	-	A	124273729	G	A	124273729	3	1	927	1	0	0	0	0	1	0	0	0	7507	1145	40	1	1331	1	HTRA1	10	124273729	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	34580794	124273729	11261018	47	74941										
ACADSB	0	genome.wustl.edu	37	chr10	124800027	124800027	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aatatggaggcacaggagctTcatttttatccactgtgctc	9	9	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	10	124800027	124800027	T	C	SNP	ACADSB	ENST00000358776	human	ensembl	69_37n	1	known	missense	c.349	p.S117P	1.000	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177	56	0	0	70	16	18.6	-	-	-	C	124800027	T	C	124800027	3	2	927	1	0	0	0	0	1	0	0	0	115	1783	62	5	363	5	ACADSB	10	124800027	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	526298	124800027	10734720	48	74942										
OR52J3	0	genome.wustl.edu	37	chr11	5068215	5068215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gcatgtgcattgtaattcgtCccgttttacttacacttccc	6	12	0	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	5068215	5068215	C	T	SNP	OR52J3	ENST00000380370	human	ensembl	69_37n	1	known	missense	c.460	p.P154S	0.004	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52J3	HGNC	ENSG00000205495	98	0	0	58	14	19.44	-	-	-	T	5068215	C	T	5068215	3	4	927	1	0	0	0	0	1	0	0	0	11195	855	30	2	462	2	OR52J3	11	5068215	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		5068215	129938301	49	74943										
SLC3A2	0	genome.wustl.edu	37	chr11	62652967	62652967	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	caaggctcctgacttccttcTtgccggctcaacttctccga	7	16	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	62652967	62652967	T	G	SNP	SLC3A2	ENST00000377892	human	ensembl	69_37n	1	known	missense	c.1426	p.L476V	0.337	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003	137	0	0	66	43	39.09	-	-	-	G	62652967	T	G	62652967	3	3	927	1	0	0	0	0	1	0	0	0	14716	1606	56	5	1471	5	SLC3A2	11	62652967	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	57584752	62652967	72353549	50	74944										
LRP5	0	genome.wustl.edu	37	chr11	68205945	68205945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ccgccctcagacgacagcccGgcccacagcagtgccatcgg	11	19	1	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	68205945	68205945	G	A	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	silent	c.4143	p.P1381	0.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,superfamily_LDrepeatLR_classA_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	80	0	0	67	11	14.1	-	-	-	A	68205945	G	A	68205945	2	1	927	1	0	0	0	0	0	0	0	1	9026	1103	39	1		1	LRP5	11	68205945	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	5552978	68205945	66800571	51	74945										
HMBS	0	genome.wustl.edu	37	chr11	118963868	118963869	+	Frame_Shift_Ins	INS	-	-	GT													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gttggtaggcatcactgctcINSgtaacattccacgagggccc							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	118963868	118963869	-	GT	INS	HMBS	ENST00000278715	human	ensembl	69_37n	1	known	frame_shift_ins	c.961_962	p.N322fs	0.029:0.000	superfamily_Porphobilinogen_deaminase_C,pirsf_4pyrrol_synth_OHMeBilane_synth	pfam_Porphobilin_deaminase_N,pfam_Porphobilinogen_deaminase_C,superfamily_Porphobilinogen_deaminase_C,pirsf_4pyrrol_synth_OHMeBilane_synth,prints_4pyrrol_synth_OHMeBilane_synth,tigrfam_4pyrrol_synth_OHMeBilane_synth	-	no_errors	HMBS	HGNC	ENSG00000256269	66	0	0	65	10	13.33	-	-	-	GT	118963869	-	GT	118963868	7	5	927	1	0	1	1	0	0	0	0	0	7270	884	31	0	1015	0	HMBS	11	118963868	Frame_Shift_Ins	INS	-	TCGA-GM-A2DB-01A-31D-A19Y-09	50757923	118963868	16042648	52	74946										
SORL1	0	genome.wustl.edu	37	chr11	121477957	121477957	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	agggctgctagtaactttacAgaaatcaagaacttattggt	9	6	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	121477957	121477957	A	T	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	1	known	silent	c.5124	p.T1708	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	62	0	0	34	22	39.29	-	-	-	T	121477957	A	T	121477957	2	4	927	1	0	0	0	0	0	0	0	1	15023	175	7	5		5	SORL1	11	121477957	Silent	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	2514089	121477957	13528559	53	74947										
CRTAM	0	genome.wustl.edu	37	chr11	122738263	122738263	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cacatgtgatatggaagaaaGgtcagtgggcagggaacctg	15	6	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	11	122738263	122738263	G	C	SNP	CRTAM	ENST00000227348	human	ensembl	69_37n	1	known	missense	c.964	p.E322Q	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CRTAM	HGNC	ENSG00000109943	58	0	0	44	10	18.52	-	-	-	C	122738263	G	C	122738263	3	2	927	1	0	0	0	0	1	0	0	0	3927	1014	35	4	994	4	CRTAM	11	122738263	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	1260306	122738263	12268253	54	74948										
MANSC1	0	genome.wustl.edu	37	chr12	12496115	12496116	+	Frame_Shift_Del	DEL	AG	AG	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tgcctctgattcccttagaaAgagatgactggatgtcaatg							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	12	12496115	12496116	AG	-	DEL	MANSC1	ENST00000535902	human	ensembl	69_37n	-1	known	frame_shift_del	c.134_133	p.L45fs	0.974:0.973	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	-	no_errors	MANSC1	HGNC	ENSG00000111261	77	0	0	61	13	17.57	-	-	-	-	12496116	AG	-	12496115	7	5	927	1	0	1	0	1	0	0	0	0	9295	72	3	0	1173	0	MANSC1	12	12496115	Frame_Shift_Del	DEL	AG	TCGA-GM-A2DB-01A-31D-A19Y-09		12496115	121355780	55	74949										
TMTC2	0	genome.wustl.edu	37	chr12	83250926	83250926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	actctgcactctttcttttcGcctgaaccatgccattggag	7	13	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	12	83250926	83250926	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	1	known	missense	c.221	p.R74H	1.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	104	0	0	60	11	15.49	-	-	-	A	83250926	G	A	83250926	3	1	927	1	0	0	0	0	1	0	0	0	16356	1087	38	1	227	1	TMTC2	12	83250926	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	70754811	83250926	50600969	56	74950										
TBX5	0	genome.wustl.edu	37	chr12	114804031	114804031	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ggcagtgggtatgggttgggTggaggcaggaggtcctggga	23	4	0	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	12	114804031	114804031	T	A	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	silent	c.921	p.P307	0.086	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	117	0	0	78	15	16.13	-	-	-	A	114804031	T	A	114804031	2	1	927	1	0	0	0	0	0	0	0	1	15756	1683	59	5		5	TBX5	12	114804031	Silent	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	31553105	114804031	19047864	57	74951										
UBC	0	genome.wustl.edu	37	chr12	125396335	125396337	+	In_Frame_Del	DEL	TCC	TCC	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttgtagtcagacagggtgcgTccatcttccagctgtttccc							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	12	125396335	125396337	TCC	-	DEL	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	in_frame_del	c.1983_1981	p.G661in_frame_del	0.860:1.000:1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	107	0	0	65	21	23.86	-	-	-	-	125396337	TCC	-	125396335	7	5	927	1	0	1	0	1	0	0	0	0	16939	1654	58	0	78	0	UBC	12	125396335	In_Frame_Del	DEL	TCC	TCGA-GM-A2DB-01A-31D-A19Y-09	10592304	125396335	8455560	58	74952										
PIWIL1	0	genome.wustl.edu	37	chr12	130839528	130839528	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aaaggcagcgtgaagtgggaCgactcattgattacattcat	11	7	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	12	130839528	130839528	C	T	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	nonsense	c.1267	p.R423*	0.046	superfamily_RNaseH-like_dom,superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	79	0	0	78	10	11.36	-	-	-	T	130839528	C	T	130839528	4	4	927	1	0	0	0	0	0	1	0	0	12031	528	19	1	1305	1	PIWIL1	12	130839528	Nonsense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	5443193	130839528	3012367	59	74953										
ZC3H13	0	genome.wustl.edu	37	chr13	46549769	46549770	+	Frame_Shift_Del	DEL	TC	TC	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tagcacgctctctttctagtTctctctctttttctctttcc							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	13	46549769	46549770	TC	-	DEL	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	frame_shift_del	c.2117_2116	p.E706fs	0.966:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	163	0	0	137	25	15.43	-	-	-	-	46549770	TC	-	46549769	7	5	927	1	0	1	0	1	0	0	0	0	17661	1783	62	0	2601	0	ZC3H13	13	46549769	Frame_Shift_Del	DEL	TC	TCGA-GM-A2DB-01A-31D-A19Y-09		46549769	68620109	60	74954										
CUL4A	0	genome.wustl.edu	37	chr13	113914970	113914970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	agtgtttcaggatagacaatAtcagattgatgctgctatcg	10	6	2	3			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	13	113914970	113914970	A	G	SNP	CUL4A	ENST00000375440	human	ensembl	69_37n	1	known	missense	c.2081	p.Y694C	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4A	HGNC	ENSG00000139842	55	0	0	41	11	21.15	-	-	-	G	113914970	A	G	113914970	3	3	927	1	0	0	0	0	1	0	0	0	4088	449	16	5	2155	5	CUL4A	13	113914970	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	67365201	113914970	1254908	61	74955										
PRKD1	0	genome.wustl.edu	37	chr14	30108065	30108065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tccaatgtatgattgagaatTtgacctcttctctcgaccaa	6	10	2	3			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	14	30108065	30108065	T	C	SNP	PRKD1	ENST00000331968	human	ensembl	69_37n	-1	known	missense	c.742	p.N248D	0.983	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304	78	0	0	73	10	12.05	-	-	-	C	30108065	T	C	30108065	3	2	927	1	0	0	0	0	1	0	0	0	12599	1841	64	5	2052	5	PRKD1	14	30108065	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09		30108065	77241475	62	74956										
SEC23A	0	genome.wustl.edu	37	chr14	39517903	39517903	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aaatctgaaggaacttgggtCatctttatgatattctccaa	7	7	4	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	14	39517903	39517903	C	T	SNP	SEC23A	ENST00000307712	human	ensembl	69_37n	-1	known	missense	c.1690	p.D564N	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934	78	0	0	78	12	13.33	-	-	-	T	39517903	C	T	39517903	3	4	927	1	0	0	0	0	1	0	0	0	14079	826	29	2	631	2	SEC23A	14	39517903	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	9409838	39517903	67831637	63	74957										
FAM179B	0	genome.wustl.edu	37	chr14	45473547	45473547	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cttgtcagccaaaaatcgtcTgatcctacgggtagaaatca	8	10	3	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	14	45473547	45473547	T	A	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	1	known	silent	c.2622	p.S874	0.120	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	48	0	0	44	10	18.52	-	-	-	A	45473547	T	A	45473547	2	1	927	1	0	0	0	0	0	0	0	1	5546	1567	55	5		5	FAM179B	14	45473547	Silent	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	5955644	45473547	61875993	64	74958										
SCG3	0	genome.wustl.edu	37	chr15	51991585	51991585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aaatgctactgacaatataaGcaagcttttcccaggtatga	7	8	0	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	15	51991585	51991585	G	T	SNP	SCG3	ENST00000220478	human	ensembl	69_37n	1	known	missense	c.1055	p.S352I	1.000	NULL	NULL	-	no_errors	SCG3	HGNC	ENSG00000104112	93	0	0	54	16	22.86	-	-	-	T	51991585	G	T	51991585	3	4	927	1	0	0	0	0	1	0	0	0	13979	971	34	4	1089	4	SCG3	15	51991585	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09		51991585	50539807	65	74959										
ARRDC4	0	genome.wustl.edu	37	chr15	98513169	98513169	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ctcgaactgccattagtgatCggtacaattccatataatgg	8	9	0	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	15	98513169	98513169	C	G	SNP	ARRDC4	ENST00000268042	human	ensembl	69_37n	1	known	missense	c.939	p.I313M	0.990	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450	81	0	0	28	9	24.32	-	-	-	G	98513169	C	G	98513169	3	3	927	1	0	0	0	0	1	0	0	0	989	874	31	3	961	3	ARRDC4	15	98513169	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	46521584	98513169	4018223	66	74960										
ZNF319	0	genome.wustl.edu	37	chr16	58030938	58030938	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tgtgccgcagcagctcggcaGattggtcaaagcctttctgg	13	11	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	16	58030938	58030938	G	A	SNP	ZNF319	ENST00000299237	human	ensembl	69_37n	-1	known	missense	c.1232	p.S411F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188	50	0	0	30	11	26.83	-	-	-	A	58030938	G	A	58030938	3	1	927	1	0	0	0	0	1	0	0	0	17933	942	33	2	520	2	ZNF319	16	58030938	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09		58030938	32323815	67	74961										
PLCG2	0	genome.wustl.edu	37	chr16	81953183	81953183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ttgagagtctggtggagctcGtcagttactacgagaagcat	13	7	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	16	81953183	81953183	G	A	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.2149	p.V717I	1.000	pfam_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,prints_SH2,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	50	0	0	48	7	12.73	-	-	-	A	81953183	G	A	81953183	3	1	927	1	0	0	0	0	1	0	0	0	12110	1145	40	1	2223	1	PLCG2	16	81953183	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	23922245	81953183	8401570	68	74962										
MBTPS1	0	genome.wustl.edu	37	chr16	84115459	84115459	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gggagcctccgggctgacgcGatcagggcctgcttcatact	14	13	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	16	84115459	84115459	G	C	SNP	MBTPS1	ENST00000343411	human	ensembl	69_37n	-1	known	missense	c.1341	p.I447M	0.227	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53	pfam_Peptidase_S8/S53,superfamily_Peptidase_S8/S53,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943	55	0	0	36	7	16.28	-	-	-	C	84115459	G	C	84115459	3	2	927	1	0	0	0	0	1	0	0	0	9432	1048	37	3	1869	3	MBTPS1	16	84115459	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	2162276	84115459	6239294	69	74963										
KIAA0182	0	genome.wustl.edu	37	chr16	85689441	85689441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cgatgcacctgcacctctctGgggtccgctaccctcccgag	10	18	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	16	85689441	85689441	G	A	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	1	known	missense	c.907	p.G303R	1.000	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	21	0	0	26	7	21.21	-	-	-	A	85689441	G	A	85689441	3	1	927	1	0	0	0	0	1	0	0	0	8211	1348	47	4	929	4	KIAA0182	16	85689441	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	1573982	85689441	4665312	70	74964										
GPS2	0	genome.wustl.edu	37	chr17	7217257	7217258	+	Frame_Shift_Del	DEL	CT	CT	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gggtccaaacatttgtttggCtctgtcagctgccatgaggg							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	17	7217257	7217258	CT	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_del	c.448_447	p.R149fs	1.000:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	85	0	0	40	18	30.51	-	-	-	-	7217258	CT	-	7217257	7	5	927	1	0	1	0	1	0	0	0	0	6784	797	28	0	559	0	GPS2	17	7217257	Frame_Shift_Del	DEL	CT	TCGA-GM-A2DB-01A-31D-A19Y-09		7217257	73977953	71	74965										
TP53	0	genome.wustl.edu	37	chr17	7577058	7577058	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gggcagctcgtggtgaggctCccctttcttgcggagattct	14	11	2	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	17	7577058	7577058	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.880	p.E294*	0.015	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	95	0	0	41	20	32.26	-	-	-	A	7577058	C	A	7577058	4	1	927	1	0	0	0	0	0	1	0	0	16477	864	30	2	406	2	TP53	17	7577058	Nonsense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	359801	7577058	73618152	72	74966										
DNAH2	0	genome.wustl.edu	37	chr17	7733717	7733718	+	Frame_Shift_Del	DEL	CT	CT	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ataagaagctgctgttttcaCtctgtttcttccactctgtg							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	17	7733717	7733718	CT	-	DEL	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	frame_shift_del	c.11953_11954	p.C3986fs	1.000:1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	55	0	0	24	19	44.19	-	-	-	-	7733718	CT	-	7733717	7	5	927	1	0	1	0	1	0	0	0	0	4638	565	20	0	12259	0	DNAH2	17	7733717	Frame_Shift_Del	DEL	CT	TCGA-GM-A2DB-01A-31D-A19Y-09	156659	7733717	73461493	73	74967										
RAI1	0	genome.wustl.edu	37	chr17	17699094	17699095	+	Frame_Shift_Del	DEL	CT	CT	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtccagagctggtttgagtcCtctctgtcacacatgaagcc							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	17	17699094	17699095	CT	-	DEL	RAI1	ENST00000353383	human	ensembl	69_37n	1	known	frame_shift_del	c.2832_2833	p.L946fs	0.986:0.999	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	23	0	0	16	5	23.81	-	-	-	-	17699095	CT	-	17699094	7	5	927	1	0	1	0	1	0	0	0	0	13090	668	24	0	2834	0	RAI1	17	17699094	Frame_Shift_Del	DEL	CT	TCGA-GM-A2DB-01A-31D-A19Y-09	9965377	17699094	63496116	74	74968										
CNTNAP1	0	genome.wustl.edu	37	chr17	40837256	40837256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ggccgacatactctatttcgAcggcgacgatgccatctcct	9	14	2	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	17	40837256	40837256	A	G	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.533	p.D178G	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	58	0	0	41	6	12.5	-	-	-	G	40837256	A	G	40837256	3	3	927	1	0	0	0	0	1	0	0	0	3676	275	10	5	551	5	CNTNAP1	17	40837256	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	23138162	40837256	40357954	75	74969										
VAPA	0	genome.wustl.edu	37	chr18	9954080	9954080	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	taaggctcagaaaggtagcaCattcggataaacctggatca	10	8	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	18	9954080	9954080	C	G	SNP	VAPA	ENST00000340541	human	ensembl	69_37n	1	known	missense	c.757	p.H253D	1.000	pirsf_Vesicle-associated_membrane	pfam_Major_sperm,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_Major_sperm	-	no_errors	VAPA	HGNC	ENSG00000101558	144	0	0	71	26	26.53	-	-	-	G	9954080	C	G	9954080	3	3	927	1	0	0	0	0	1	0	0	0	17218	478	17	4	783	4	VAPA	18	9954080	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		9954080	68123168	76	74970										
IMPA2	0	genome.wustl.edu	37	chr18	12012174	12012174	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	tattttcctttgcagattccCgactgtggcggttagcattg	10	9	0	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	18	12012174	12012174	C	A	SNP	IMPA2	ENST00000269159	human	ensembl	69_37n	1	known	missense	c.341	p.P114Q	0.999	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401	100	0	0	82	14	14.58	-	-	-	A	12012174	C	A	12012174	3	1	927	1	0	0	0	0	1	0	0	0	7777	652	23	3	355	3	IMPA2	18	12012174	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	2058094	12012174	66065074	77	74971										
ZNF91	0	genome.wustl.edu	37	chr19	23544004	23544004	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ctctccagtatgaattatctTatgtgtagaaagacttgagg	9	6	2	4			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	19	23544004	23544004	T	A	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	nonsense	c.1777	p.K593*	0.091	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	35	0	0	30	4	11.76	-	-	-	A	23544004	T	A	23544004	4	1	927	1	0	0	0	0	0	1	0	0	18293	1763	61	5	1802	5	ZNF91	19	23544004	Nonsense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09		23544004	35584979	78	74972										
HAUS5	0	genome.wustl.edu	37	chr19	36110654	36110654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cacgctgctgcggcacaggcCgggagagtgagactggggct	18	11	0	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	19	36110654	36110654	C	T	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	missense	c.1400	p.P467L	0.011	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	24	0	0	20	4	16.67	-	-	-	T	36110654	C	T	36110654	3	4	927	1	0	0	0	0	1	0	0	0	7020	652	23	1	1458	1	HAUS5	19	36110654	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	12566650	36110654	23018329	79	74973										
DBP	0	genome.wustl.edu	37	chr19	49140184	49140184	+	Frame_Shift_Del	DEL	G	G	-													0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	caagcagcgctcccccgccaGggggtgtcccggccgggccg							TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	19	49140184	49140184	G	-	DEL	DBP	ENST00000222122	human	ensembl	69_37n	-1	known	frame_shift_del	c.68	p.P23fs	1.000	NULL	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	DBP	HGNC	ENSG00000105516	26	0	0	9	7	41.18	-	-	-	-	49140184	G	-	49140184	7	5	927	1	0	1	0	1	0	0	0	0	4288	1000	35	0	925	0	DBP	19	49140184	Frame_Shift_Del	DEL	G	TCGA-GM-A2DB-01A-31D-A19Y-09	13029530	49140184	9988799	80	74974										
ZNF615	0	genome.wustl.edu	37	chr19	52496796	52496796	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	ccacactcaccacatacataGggtttttctccagtatgagt	6	12	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	19	52496796	52496796	G	C	SNP	ZNF615	ENST00000391795	human	ensembl	69_37n	-1	known	silent	c.1548	p.P516	0.511	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619	77	0	0	48	9	15.79	-	-	-	C	52496796	G	C	52496796	2	2	927	1	0	0	0	0	0	0	0	1	18136	987	35	4		4	ZNF615	19	52496796	Silent	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	3356612	52496796	6632187	81	74975										
ESF1	0	genome.wustl.edu	37	chr20	13756551	13756551	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	aggagcatctttatctaattCtctccaagcatgctcaaaac	5	11	4	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	20	13756551	13756551	C	A	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	nonsense	c.1003	p.E335*	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	105	0	0	61	13	17.57	-	-	-	A	13756551	C	A	13756551	4	1	927	1	0	0	0	0	0	1	0	0	5288	922	32	2	1600	2	ESF1	20	13756551	Nonsense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09		13756551	49268969	82	74976										
RTEL1	0	genome.wustl.edu	37	chr20	62319309	62319309	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gccctttcccagtctgcctgGagaacccacacatcatcgac	7	17	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	20	62319309	62319309	G	T	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	1	known	nonsense	c.1501	p.E501*	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	35	0	0	40	8	16.67	-	-	-	T	62319309	G	T	62319309	4	4	927	1	0	0	0	0	0	1	0	0	13806	1175	41	2	1567	2	RTEL1	20	62319309	Nonsense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	48562758	62319309	706211	83	74977										
PRPF6	0	genome.wustl.edu	37	chr20	62630991	62630991	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gcgactgctcctcaagtctgTtcgggagacgaaccctcatc	10	14	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	20	62630991	62630991	T	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	1	known	missense	c.902	p.V301D	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	42	0	0	35	13	26.53	-	-	-	A	62630991	T	A	62630991	3	1	927	1	0	0	0	0	1	0	0	0	12655	1725	60	5	932	5	PRPF6	20	62630991	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09	311682	62630991	394529	84	74978										
MYT1	0	genome.wustl.edu	37	chr20	62859285	62859285	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gaaaagtggagtcaaggtggCacccaccaaggacgacaagg	14	9	1	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	20	62859285	62859285	C	A	SNP	MYT1	ENST00000536311	human	ensembl	69_37n	1	known	missense	c.2717	p.A906E	0.949	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132	75	0	0	82	19	18.81	-	-	-	A	62859285	C	A	62859285	3	1	927	1	0	0	0	0	1	0	0	0	10178	710	25	4	2698	4	MYT1	20	62859285	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	228294	62859285	166235	85	74979										
C22orf43	0	genome.wustl.edu	37	chr22	23959793	23959793	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	catcatcatcatcacagtcaTcatcttcacttcgtggtagg	6	12	8	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	22	23959793	23959793	T	A	SNP	C22orf43	ENST00000317749	human	ensembl	69_37n	-1	known	missense	c.488	p.D163V	0.000	NULL	NULL	-	no_errors	C22orf43	HGNC	ENSG00000189269	84	0	0	55	12	17.91	-	-	-	A	23959793	T	A	23959793	3	1	927	1	0	0	0	0	1	0	0	0	2170	1435	50	5	225	5	C22orf43	22	23959793	Missense_Mutation	SNP	T	TCGA-GM-A2DB-01A-31D-A19Y-09		23959793	27344773	86	74980										
PIGA	0	genome.wustl.edu	37	chrX	15343249	15343249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gacatttctaacatccttgtGttctaaagctcccaaaagac	5	11	2	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	X	15343249	15343249	G	A	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.874	p.H292Y	1.000	pfam_Glyco_trans_1	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	70	0	0	80	16	16.67	-	-	-	A	15343249	G	A	15343249	3	1	927	1	0	0	0	0	1	0	0	0	11958	1377	48	4	592	4	PIGA	23	15343249	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09		15343249	139927311	87	74981										
DMD	0	genome.wustl.edu	37	chrX	32364150	32364150	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gtgattctttgttgtaagttGtctcctctttgcaacaattc	7	8	3	1			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	X	32364150	32364150	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.5496	p.D1832E	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	99	0	0	109	32	22.7	-	-	-	T	32364150	G	T	32364150	3	4	927	1	0	0	0	0	1	0	0	0	4616	1368	48	4	5873	4	DMD	23	32364150	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	17020901	32364150	122906410	88	74982										
RPGR	0	genome.wustl.edu	37	chrX	38146288	38146288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	cttcctcacaggttccatccCctctaccttcaggcccatcc	4	20	3	0			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	X	38146288	38146288	C	T	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.1964	p.G655E	0.000	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	216	0	0	250	35	12.24	-	-	-	T	38146288	C	T	38146288	3	4	927	1	0	0	0	0	1	0	0	0	13634	623	22	4	2057	4	RPGR	23	38146288	Missense_Mutation	SNP	C	TCGA-GM-A2DB-01A-31D-A19Y-09	5782138	38146288	117124272	89	74983										
USP9X	0	genome.wustl.edu	37	chrX	41075620	41075620	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gagaagtgtttgatcacatgAtgaagcgtatgtcatacagg	12	5	2	4			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	X	41075620	41075620	A	C	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	1	known	missense	c.5800	p.M1934L	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	103	0	0	112	17	13.18	-	-	-	C	41075620	A	C	41075620	3	2	927	1	0	0	0	0	1	0	0	0	17187	333	12	5	5934	5	USP9X	23	41075620	Missense_Mutation	SNP	A	TCGA-GM-A2DB-01A-31D-A19Y-09	2929332	41075620	114194940	90	74984										
TIMM8A	0	genome.wustl.edu	37	chrX	100603573	100603573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0666666666666667	6	0.844602706781064	1.05446623093682	0.995884773662551	1.08641975308642	0.608391608391609	1	0	gctggaagcgctgcttttgaGtctctacctcgatgaaatgc	11	10	1	2			TCGA-GM-A2DB-01A-31D-A19Y-09	TCGA-GM-A2DB-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c13e05b6-0b3e-4c1f-800e-4a49c5d417aa	7bba57a5-c11e-43a2-ab14-5b33f5afa6d9	X	100603573	100603573	G	T	SNP	TIMM8A	ENST00000372902	human	ensembl	69_37n	-1	known	missense	c.80	p.T27N	0.998	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	pfam_Tim8/9/10/13_Znf-like,superfamily_Tim8/9/10/13_Znf-like	-	no_errors	TIMM8A	HGNC	ENSG00000126953	61	0	0	51	13	20.31	-	-	-	T	100603573	G	T	100603573	3	4	927	1	0	0	0	0	1	0	0	0	16009	1029	36	4	240	4	TIMM8A	23	100603573	Missense_Mutation	SNP	G	TCGA-GM-A2DB-01A-31D-A19Y-09	59527953	100603573	54666987	91	74985										
PMVK	0	genome.wustl.edu	37	chr1	154897637	154897637	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gcggataaattctatcaggtTctccaactgctcctccaggc	8	13	3	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	1	154897637	154897637	T	A	SNP	PMVK	ENST00000368467	human	ensembl	69_37n	-1	known	missense	c.547	p.N183Y	0.018	pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344	48	0	0	72	30	29.41	-	-	-	A	154897637	T	A	154897637	3	1	928	1	0	0	0	0	1	0	0	0	12218	1783	62	5	35	5	PMVK	1	154897637	Missense_Mutation	SNP	T	TCGA-GM-A2DC-01A-11D-A18P-09		154897637	94352984	1	74986										
SLC19A2	0	genome.wustl.edu	37	chr1	169446894	169446894	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	ataaggctgagcccctgcagTagaacaacaggtttataacg	10	9	0	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	1	169446894	169446894	T	G	SNP	SLC19A2	ENST00000236137	human	ensembl	69_37n	-1	known	silent	c.306	p.L102	0.981	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479	16	0	0	32	8	20	-	-	-	G	169446894	T	G	169446894	2	3	928	1	0	0	0	0	0	0	0	1	14518	1625	57	5		5	SLC19A2	1	169446894	Silent	SNP	T	TCGA-GM-A2DC-01A-11D-A18P-09	14549257	169446894	79803727	2	74987										
PXDN	0	genome.wustl.edu	37	chr2	1687851	1687851	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	aaggaacaacacacaactcaCagcctctcgagcttcgggag	9	13	2	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	2	1687851	1687851	C	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	splice_site	c.488+1	e5+1	1.000	-	-	-	no_errors	PXDN	HGNC	ENSG00000130508	52	0	0	30	15	33.33	-	-	-	A	1687851	C	A	1687851	5	1	928	1	0	0	0	0	0	0	1	0	12930	492	17	4	4026	4	PXDN	2	1687851	Splice_Site	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		1687851	241511522	3	74988										
KBTBD10	0	genome.wustl.edu	37	chr2	170366849	170366849	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	tcagtcatttcaaatgacagCctaaatgtagaaaaagaaga	7	6	3	4			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	2	170366849	170366849	C	T	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	1	known	silent	c.561	p.S187	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	35	0	0	55	27	32.53	-	-	-	T	170366849	C	T	170366849	2	4	928	1	0	0	0	0	0	0	0	1	8044	738	26	4		4	KBTBD10	2	170366849	Silent	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09	168678998	170366849	72832524	4	74989										
PCDHB12	0	genome.wustl.edu	37	chr5	140590325	140590325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	ccacggagcccgggctattcGgcgtgtgggcgcacaatggc	16	13	0	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	5	140590325	140590325	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	1	known	missense	c.1846	p.G616S	0.092	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	13	0	0	17	8	32	-	-	-	A	140590325	G	A	140590325	3	1	928	1	0	0	0	0	1	0	0	0	11610	1116	39	1	1848	1	PCDHB12	5	140590325	Missense_Mutation	SNP	G	TCGA-GM-A2DC-01A-11D-A18P-09		140590325	40324935	5	74990										
HLA-DRB1	0	genome.wustl.edu	37	chr6	32549452	32549452	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	tggaaggtccagtctccattCtggatcaggcctgtggacac	12	11	3	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	6	32549452	32549452	C	G	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.534	p.Q178H	0.016	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	8	0	0	11	6	35.29	-	-	-	G	32549452	C	G	32549452	3	3	928	1	0	0	0	0	1	0	0	0	7259	912	32	2	282	2	HLA-DRB1	6	32549452	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		32549452	138565615	6	74991										
EIF2AK1	0	genome.wustl.edu	37	chr7	6084237	6084237	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gttctatccacgcggtgtgaTagccaacaatattggggtgc	12	9	1	1			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	7	6084237	6084237	T	A	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	missense	c.686	p.Y229F	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	26	0	0	21	36	63.16	-	-	-	A	6084237	T	A	6084237	3	1	928	1	0	0	0	0	1	0	0	0	5031	1406	49	5	1242	5	EIF2AK1	7	6084237	Missense_Mutation	SNP	T	TCGA-GM-A2DC-01A-11D-A18P-09		6084237	153054426	7	74992										
ELMO1	0	genome.wustl.edu	37	chr7	36934508	36934508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gttcatcctctcggactggcGgattttcaggatctcagtgt	11	10	4	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	7	36934508	36934508	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.1552	p.R518C	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	135	0	0	93	86	48.04	-	-	-	A	36934508	G	A	36934508	3	1	928	1	0	0	0	0	1	0	0	0	5102	1116	39	1	655	1	ELMO1	7	36934508	Missense_Mutation	SNP	G	TCGA-GM-A2DC-01A-11D-A18P-09	30850271	36934508	122204155	8	74993										
CSPP1	0	genome.wustl.edu	37	chr8	67988761	67988761	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gaaaacagtaagatactgatCtctatggctaaggaaaacat	8	6	1	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	8	67988761	67988761	C	T	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	1	known	silent	c.252	p.I84	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	44	0	0	91	20	18.02	-	-	-	T	67988761	C	T	67988761	2	4	928	1	0	0	0	0	0	0	0	1	3994	903	32	2		2	CSPP1	8	67988761	Silent	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		67988761	78375261	9	74994										
DGAT1	0	genome.wustl.edu	37	chr8	145542158	145542158	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	tcaaccagtaagaccacagcCgctgggaaacacagaatggt	10	11	1	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	8	145542158	145542158	C	T	SNP	DGAT1	ENST00000332324	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	0.001	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000	18	0	0	25	17	40.48	-	-	-	T	145542158	C	T	145542158	2	4	928	1	0	0	0	0	0	0	0	1	4493	639	23	1		1	DGAT1	8	145542158	Silent	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09	77553397	145542158	821864	10	74995										
TNC	0	genome.wustl.edu	37	chr9	117808755	117808755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	tattccatagagttcaatttCgtattcagtagcctctctga	6	9	3	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	9	117808755	117808755	C	T	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.5059	p.E1687K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	87	0	0	51	23	31.08	-	-	-	T	117808755	C	T	117808755	3	4	928	1	0	0	0	0	1	0	0	0	16365	893	31	1	1594	1	TNC	9	117808755	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		117808755	23404676	11	74996										
ZFP36L1	0	genome.wustl.edu	37	chr14	69257168	69257169	+	Frame_Shift_Ins	INS	-	-	C													0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	cctttctgtccagcaggcaaINSccccctgcactgggagcact							TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	14	69257168	69257169	-	C	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.99_98	p.C34fs	0.993:0.997	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	25	0	0	15	8	34.78	-	-	-	C	69257169	-	C	69257168	7	5	928	1	0	1	1	0	0	0	0	0	17742	30	2	0	921	0	ZFP36L1	14	69257168	Frame_Shift_Ins	INS	-	TCGA-GM-A2DC-01A-11D-A18P-09		69257168	38092372	12	74997										
DDX52	0	genome.wustl.edu	37	chr17	35981486	35981486	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gaataacatccacattaataCcttcatatatgagctcatga	4	9	2	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	17	35981486	35981486	C	A	SNP	DDX52	ENST00000349699	human	ensembl	69_37n	-1	known	missense	c.1307	p.G436V	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141	87	0	0	81	22	21.36	-	-	-	A	35981486	C	A	35981486	3	1	928	1	0	0	0	0	1	0	0	0	4401	507	18	4	516	4	DDX52	17	35981486	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		35981486	45213724	13	74998										
KRTAP4-11	0	genome.wustl.edu	37	chr17	39274455	39274455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	agcagctggggcgacagtagGtggtcctgcagcaggtggtc	18	9	0	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	17	39274455	39274455	G	T	SNP	KRTAP4-11	ENST00000391413	human	ensembl	69_37n	-1	known	missense	c.113	p.T38N	0.002	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721	33	0	0	92	23	20	-	-	-	T	39274455	G	T	39274455	3	4	928	1	0	0	0	0	1	0	0	0	8603	1261	44	4	478	4	KRTAP4-11	17	39274455	Missense_Mutation	SNP	G	TCGA-GM-A2DC-01A-11D-A18P-09	3292969	39274455	41920755	14	74999										
ICAM3	0	genome.wustl.edu	37	chr19	10444840	10444840	+	Frame_Shift_Del	DEL	A	A	-													0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	ccccgtgttagctcaccctcAatgtccatcaccacgaccag							TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	10444840	10444840	A	-	DEL	ICAM3	ENST00000160262	human	ensembl	69_37n	-1	known	frame_shift_del	c.1437	p.I479fs	0.031	NULL	pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM3	HGNC	ENSG00000076662	42	0	0	19	15	40.54	-	-	-	-	10444840	A	-	10444840	7	5	928	1	0	1	0	1	0	0	0	0	7535	126	5	0	214	0	ICAM3	19	10444840	Frame_Shift_Del	DEL	A	TCGA-GM-A2DC-01A-11D-A18P-09		10444840	48684143	15	75000										
ZNF625	0	genome.wustl.edu	37	chr19	12251081	12251081	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gcaggcggcagagcgacagaAgttgtggcagagggacccgg	19	9	0	3			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	12251081	12251081	A	C	SNP	ZNF625	ENST00000430024	human	ensembl	69_37n	-1	known	missense	c.326	p.L109R	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000213297	20	0	0	9	15	62.5	-	-	-	C	12251081	A	C	12251081	3	2	928	1	0	0	0	0	1	0	0	0	18145	87	3	5		5	ZNF625	19	12251081	Missense_Mutation	SNP	A	TCGA-GM-A2DC-01A-11D-A18P-09	1806241	12251081	46877902	16	75001										
PPP5C	0	genome.wustl.edu	37	chr19	46891947	46891947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gagggctacgaggtggctcaCggaggccgctgtgtcaccgt	17	11	2	0			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	46891947	46891947	C	T	SNP	PPP5C	ENST00000478046	human	ensembl	69_37n	1	known	missense	c.1310	p.T437M	0.969	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP5C	HGNC	ENSG00000011485	57	0	0	43	16	27.12	-	-	-	T	46891947	C	T	46891947	3	4	928	1	0	0	0	0	1	0	0	0	12483	535	19	1	1356	1	PPP5C	19	46891947	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09	34640866	46891947	12237036	17	75002										
GNL3L	0	genome.wustl.edu	37	chrX	54585017	54585017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	gctgcagaggatcatggagaCggaccccctgcaacagggcc	14	13	1	2			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	X	54585017	54585017	C	T	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	1	known	missense	c.1595	p.T532M	0.931	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	42	0	0	38	21	35.59	-	-	-	T	54585017	C	T	54585017	3	4	928	1	0	0	0	0	1	0	0	0	6590	536	19	1	1649	1	GNL3L	23	54585017	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09		54585017	100685543	18	75003										
SRPX2	0	genome.wustl.edu	37	chrX	99920275	99920275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.105263157894737	2	0.773996984733788	1.43529411764706	7.17647058823529	0.797385620915033	1	1	0	agatccgctgtccccactcaCgtgagaagatggcagagcca	11	13	1	4			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	X	99920275	99920275	C	T	SNP	SRPX2	ENST00000373004	human	ensembl	69_37n	1	known	missense	c.568	p.R190C	1.000	pfam_Hyalin,pfscan_Hyalin	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359	72	0	0	45	25	35.71	-	-	-	T	99920275	C	T	99920275	3	4	928	1	0	0	0	0	1	0	0	0	15256	536	19	1	586	1	SRPX2	23	99920275	Missense_Mutation	SNP	C	TCGA-GM-A2DC-01A-11D-A18P-09	45335258	99920275	55350285	19	75004										
AGRN	0	genome.wustl.edu	37	chr1	970683	970683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ccgggacccacttcactccaGtgcctccgacgcctcctgat	8	19	1	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	1	970683	970683	G	T	SNP	AGRN	ENST00000379370	human	ensembl	69_37n	1	known	missense	c.490	p.V164L	0.002	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_EGF_laminin,pfam_SEA,pfam_EGF-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl,smart_FacI_MAC,smart_Fol_N,smart_Prot_inh_Kazal,smart_EGF-like,smart_EGF_laminin,smart_SEA,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA	-	no_errors	AGRN	HGNC	ENSG00000188157	49	0	0	33	26	44.07	-	-	-	T	970683	G	T	970683	3	4	929	1	0	0	0	0	1	0	0	0	397	1029	36	4	500	4	AGRN	1	970683	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		970683	248279938	1	75005										
INADL	0	genome.wustl.edu	37	chr1	62455912	62455912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	acttgaaaaagataagaatgGacttggactcagccttgctg	10	7	1	3			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	1	62455912	62455912	G	A	SNP	INADL	ENST00000371158	human	ensembl	69_37n	1	known	missense	c.3743	p.G1248E	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	53	0	0	46	16	25.81	-	-	-	A	62455912	G	A	62455912	3	1	929	1	0	0	0	0	1	0	0	0	7785	1174	41	2	3849	2	INADL	1	62455912	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09	61485229	62455912	186794709	2	75006										
NTNG1	0	genome.wustl.edu	37	chr1	107867331	107867331	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	caaaataatccactttgaaaTcaaagacaggttcgcgtttt	6	8	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	1	107867331	107867331	T	A	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	1	known	missense	c.674	p.I225N	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	77	0	0	57	11	16.18	-	-	-	A	107867331	T	A	107867331	3	1	929	1	0	0	0	0	1	0	0	0	10777	1435	50	5	680	5	NTNG1	1	107867331	Missense_Mutation	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	45411419	107867331	141383290	3	75007										
CGN	0	genome.wustl.edu	37	chr1	151509325	151509325	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gaggagcagcatgaggtcaaTgaacagctccaggcccggat	14	10	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	1	151509325	151509325	T	A	SNP	CGN	ENST00000271636	human	ensembl	69_37n	1	known	missense	c.3426	p.N1142K	0.441	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375	106	0	0	103	57	35.62	-	-	-	A	151509325	T	A	151509325	3	1	929	1	0	0	0	0	1	0	0	0	3332	1461	51	5	3500	5	CGN	1	151509325	Missense_Mutation	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	43641994	151509325	97741296	4	75008										
TPM3	0	genome.wustl.edu	37	chr1	154144514	154144514	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	atggttagtaccttttcttcAgcagcactcagacacttcag	7	11	4	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	1	154144514	154144514	A	C	SNP	TPM3	ENST00000368533	human	ensembl	69_37n	-1	known	silent	c.522	p.A174	1.000	pfam_Tropomyosin	pfam_Tropomyosin,superfamily_HR1_rho-bd,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	72	0	0	71	14	16.47	-	-	-	C	154144514	A	C	154144514	2	2	929	1	0	0	0	0	0	0	0	1	16503	175	7	5		5	TPM3	1	154144514	Silent	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09	2635189	154144514	95106107	5	75009										
UGGT1	0	genome.wustl.edu	37	chr2	128896328	128896328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tggttaatgactctgaagatGttgatgggatgcaagatgct	13	4	1	5			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	2	128896328	128896328	G	A	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	1	known	missense	c.1621	p.V541I	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	147	0	0	122	16	11.59	-	-	-	A	128896328	G	A	128896328	3	1	929	1	0	0	0	0	1	0	0	0	17038	1377	48	4	1683	4	UGGT1	2	128896328	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		128896328	114303045	6	75010										
ARIH2	0	genome.wustl.edu	37	chr3	49011143	49011143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	aattttaagtttcaagtgtcGtcagatgtatcacgcaccca	7	9	3	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	3	49011143	49011143	G	A	SNP	ARIH2	ENST00000356401	human	ensembl	69_37n	1	known	missense	c.782	p.R261H	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479	69	0	0	67	9	11.84	-	-	-	A	49011143	G	A	49011143	3	1	929	1	0	0	0	0	1	0	0	0	926	1145	40	1	808	1	ARIH2	3	49011143	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		49011143	149011287	7	75011										
LAMB2	0	genome.wustl.edu	37	chr3	49169777	49169777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	cattctggatgcgatggctgTgtgggttgtctctagcagag	15	7	2	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	3	49169777	49169777	T	C	SNP	LAMB2	ENST00000305544	human	ensembl	69_37n	-1	known	missense	c.311	p.H104R	0.544	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	108	0	0	61	22	26.51	-	-	-	C	49169777	T	C	49169777	3	2	929	1	0	0	0	0	1	0	0	0	8665	1696	59	5	5205	5	LAMB2	3	49169777	Missense_Mutation	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	158634	49169777	148852653	8	75012										
STAB1	0	genome.wustl.edu	37	chr3	52540798	52540798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tccacatgctggacggcatcCtgctgcccccgaccatcctg	9	18	0	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	3	52540798	52540798	C	G	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	missense	c.1921	p.L641V	0.971	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	31	0	0	26	6	18.75	-	-	-	G	52540798	C	G	52540798	3	3	929	1	0	0	0	0	1	0	0	0	15328	680	24	4	1991	4	STAB1	3	52540798	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	3371021	52540798	145481632	9	75013										
FILIP1L	0	genome.wustl.edu	37	chr3	99567539	99567539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gggacattgtcctttctggaGttagagaaccacaagactct	10	9	2	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	3	99567539	99567539	G	A	SNP	FILIP1L	ENST00000354552	human	ensembl	69_37n	-1	known	missense	c.2981	p.T994I	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	66	0	0	27	4	12.9	-	-	-	A	99567539	G	A	99567539	3	1	929	1	0	0	0	0	1	0	0	0	5941	1029	36	4	455	4	FILIP1L	3	99567539	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09	47026741	99567539	98454891	10	75014										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0	45	13	22.41	-	-	-	G	178952085	A	G	178952085	3	3	929	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09	79384546	178952085	19070345	11	75015										
LAP3	0	genome.wustl.edu	37	chr4	17586655	17586655	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tctgggcagaacttggcacgCcaattgatggagacgccagc	13	11	1	3			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	4	17586655	17586655	C	G	SNP	LAP3	ENST00000226299	human	ensembl	69_37n	1	known	silent	c.600	p.R200	0.941	pfam_Peptidase_M17_C	pfam_Peptidase_M17_C,pfam_Peptidase_M17_N,prints_Peptidase_M17	-	no_errors	LAP3	HGNC	ENSG00000002549	35	0	0	38	7	15.56	-	-	-	G	17586655	C	G	17586655	2	3	929	1	0	0	0	0	0	0	0	1	8677	726	26	4		4	LAP3	4	17586655	Silent	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		17586655	173567621	12	75016										
GABRA4	0	genome.wustl.edu	37	chr4	46930366	46930366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	atttgtctattttacttgtgCcagatccagaaggtggtgga	11	6	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	4	46930366	46930366	C	T	SNP	GABRA4	ENST00000264318	human	ensembl	69_37n	-1	known	missense	c.1541	p.G514D	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	77	0	0	68	10	12.82	-	-	-	T	46930366	C	T	46930366	3	4	929	1	0	0	0	0	1	0	0	0	6212	739	26	4	127	4	GABRA4	4	46930366	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	29343711	46930366	144223910	13	75017										
ANK2	0	genome.wustl.edu	37	chr4	114257088	114257088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	agtactttgcagtggtgtctCgtatcaaacaggacagcaat	10	8	2	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	4	114257088	114257088	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	missense	c.3466	p.R1156C	0.998	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	49	0	0	36	21	36.84	-	-	-	T	114257088	C	T	114257088	3	4	929	1	0	0	0	0	1	0	0	0	621	884	31	1	3649	1	ANK2	4	114257088	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	67326722	114257088	76897188	14	75018										
CDYL	0	genome.wustl.edu	37	chr6	4935980	4935980	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	cttgttatccacaaagtcctCagagaataactcactaaatc	4	11	2	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	6	4935980	4935980	C	T	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	missense	c.1085	p.S362L	0.997	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	58	0	0	39	10	20.41	-	-	-	T	4935980	C	T	4935980	3	4	929	1	0	0	0	0	1	0	0	0	3214	838	29	2	933	2	CDYL	6	4935980	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		4935980	166179087	15	75019										
ATF6B	0	genome.wustl.edu	37	chr6	32094895	32094895	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ctcacctcgctggatggctcTgtggagagacgcgatgactc	13	12	2	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	6	32094895	32094895	T	C	SNP	ATF6B	ENST00000375203	human	ensembl	69_37n	-1	known	silent	c.327	p.T109	0.581	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6B	HGNC	ENSG00000213676	56	0	0	35	12	25.53	-	-	-	C	32094895	T	C	32094895	2	2	929	1	0	0	0	0	0	0	0	1	1089	1567	55	5		5	ATF6B	6	32094895	Silent	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	27158915	32094895	139020172	16	75020										
EEPD1	0	genome.wustl.edu	37	chr7	36194147	36194147	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tggagtaccgagagtatatcGgtggcttcaagaaggtggag	16	5	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	7	36194147	36194147	G	A	SNP	EEPD1	ENST00000242108	human	ensembl	69_37n	1	known	missense	c.214	p.G72S	1.000	superfamily_RuvA_2-like,tigrfam_Competence_ComEA_HhH	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	60	0	0	63	7	10	-	-	-	A	36194147	G	A	36194147	3	1	929	1	0	0	0	0	1	0	0	0	4967	1116	39	1	216	1	EEPD1	7	36194147	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		36194147	122944516	17	75021										
PTCD1	0	genome.wustl.edu	37	chr7	99022771	99022771	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tatcaaggccagccggtcagCtggggtggtcaccgttccaa	13	12	3	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	7	99022771	99022771	C	G	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	missense	c.1531	p.A511P	0.181	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	43	0	0	23	10	30.3	-	-	-	G	99022771	C	G	99022771	3	3	929	1	0	0	0	0	1	0	0	0	12807	797	28	4	730	4	PTCD1	7	99022771	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	62828624	99022771	60115892	18	75022										
NRF1	0	genome.wustl.edu	37	chr7	129349050	129349050	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	caaatgtccggagtgatgtcCgcacagaagagcaaaagcag	12	9	0	3			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	7	129349050	129349050	C	A	SNP	NRF1	ENST00000393231	human	ensembl	69_37n	1	known	missense	c.742	p.R248S	1.000	pfam_Nrf1_NLS/DNA-bd_dimer	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459	58	0	0	52	7	11.86	-	-	-	A	129349050	C	A	129349050	3	1	929	1	0	0	0	0	1	0	0	0	10719	652	23	3	760	3	NRF1	7	129349050	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	30326279	129349050	29789613	19	75023										
GALNT12	0	genome.wustl.edu	37	chr9	101611262	101611262	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tttatttcacgaacagtccaAgaaatgtgtccaggctgcga	9	9	1	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	9	101611262	101611262	A	C	SNP	GALNT12	ENST00000375011	human	ensembl	69_37n	1	known	missense	c.1634	p.K545T	0.933	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514	57	0	0	61	9	12.86	-	-	-	C	101611262	A	C	101611262	3	2	929	1	0	0	0	0	1	0	0	0	6260	72	3	5	1672	5	GALNT12	9	101611262	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09		101611262	39602169	20	75024										
MLLT10	0	genome.wustl.edu	37	chr10	22016857	22016857	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ccgaggaagtctctcgccacGgtaagcgctatttacactgc	10	13	1	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	10	22016857	22016857	G	C	SNP	MLLT10	ENST00000307729	human	ensembl	69_37n	1	known	missense	c.2063	p.R688P	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403	35	0	0	28	10	26.32	-	-	-	C	22016857	G	C	22016857	3	2	929	1	0	0	0	0	1	0	0	0	9697	1130	39	3	2173	3	MLLT10	10	22016857	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		22016857	113517890	21	75025										
MKX	0	genome.wustl.edu	37	chr10	27964235	27964235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	cttctggatgatgcagctggTagttccctgcagtttgtcct	11	10	1	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	10	27964235	27964235	T	C	SNP	MKX	ENST00000375790	human	ensembl	69_37n	-1	known	missense	c.982	p.T328A	0.467	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MKX	HGNC	ENSG00000150051	186	0	0	146	21	12.5	-	-	-	C	27964235	T	C	27964235	3	2	929	1	0	0	0	0	1	0	0	0	9681	1638	57	5	80	5	MKX	10	27964235	Missense_Mutation	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	5947378	27964235	107570512	22	75026										
OR52B2	0	genome.wustl.edu	37	chr11	6190729	6190729	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	acataaagattggccagcaaGatatggacatgttgaggaat	11	5	0	3			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	11	6190729	6190729	G	T	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	silent	c.828	p.I276	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	61	0	0	35	4	10.26	-	-	-	T	6190729	G	T	6190729	2	4	929	1	0	0	0	0	0	0	0	1	11184	932	33	2		2	OR52B2	11	6190729	Silent	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		6190729	128815787	23	75027										
CSTF3	0	genome.wustl.edu	37	chr11	33120663	33120663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tctttcatatatattagcagCttcatcactaaataatttgg	4	7	4	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	11	33120663	33120663	C	T	SNP	CSTF3	ENST00000323959	human	ensembl	69_37n	-1	known	missense	c.970	p.A324T	1.000	smart_HAT	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102	45	0	0	38	15	28.3	-	-	-	T	33120663	C	T	33120663	3	4	929	1	0	0	0	0	1	0	0	0	4018	797	28	4	1223	4	CSTF3	11	33120663	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	26929934	33120663	101885853	24	75028										
OR4C46	0	genome.wustl.edu	37	chr11	51515936	51515936	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tgctggtctcctatgtggtcAtcttgtgctccctaaggact	10	11	3	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	11	51515936	51515936	A	T	SNP	OR4C46	ENST00000328188	human	ensembl	69_37n	1	known	missense	c.655	p.I219F	0.162	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C46	HGNC	ENSG00000185926	126	0	0	97	17	14.91	-	-	-	T	51515936	A	T	51515936	3	4	929	1	0	0	0	0	1	0	0	0	11124	217	8	5	657	5	OR4C46	11	51515936	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09	18395273	51515936	83490580	25	75029										
C12orf44	0	genome.wustl.edu	37	chr12	52467488	52467488	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gtggaggggcggcaggtggaGgaggccatgctggctgtgct	22	7	0	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	12	52467488	52467488	G	A	SNP	C12orf44	ENST00000336854	human	ensembl	69_37n	1	known	silent	c.54	p.E18	1.000	pfam_ATG101	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395	71	0	0	63	10	13.7	-	-	-	A	52467488	G	A	52467488	2	1	929	1	0	0	0	0	0	0	0	1	1702	991	35	4		4	C12orf44	12	52467488	Silent	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		52467488	81384407	26	75030										
CMKLR1	0	genome.wustl.edu	37	chr12	108685826	108685826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tcatgcagctgttggcaatgGcaagggcagtggccaggggc	17	9	1	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	12	108685826	108685826	G	A	SNP	CMKLR1	ENST00000312143	human	ensembl	69_37n	-1	known	missense	c.914	p.A305V	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_DEZorph_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	68	0	0	45	15	25	-	-	-	A	108685826	G	A	108685826	3	1	929	1	0	0	0	0	1	0	0	0	3609	1203	42	4	211	4	CMKLR1	12	108685826	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09	56218338	108685826	25166069	27	75031										
TNFRSF19	0	genome.wustl.edu	37	chr13	24242897	24242897	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ctcacgcagtccatctgtggCgagttttcagatgcctggcc	11	13	3	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	13	24242897	24242897	C	T	SNP	TNFRSF19	ENST00000382258	human	ensembl	69_37n	1	known	silent	c.906	p.G302	0.522	NULL	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_19	-	no_errors	TNFRSF19	HGNC	ENSG00000127863	54	0	0	27	10	27.03	-	-	-	T	24242897	C	T	24242897	2	4	929	1	0	0	0	0	0	0	0	1	16387	755	27	1		1	TNFRSF19	13	24242897	Silent	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		24242897	90926981	28	75032										
DHRS4L2	0	genome.wustl.edu	37	chr14	24470289	24470289	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	catagcagccttcagtccatCtcctgtaagaacccttttgt	6	13	2	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	14	24470289	24470289	C	G	SNP	DHRS4L2	ENST00000382755	human	ensembl	69_37n	1	known	missense	c.521	p.S174C	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	DHRS4L2	HGNC	ENSG00000187630	290	0	0	339	71	17.23	-	-	-	G	24470289	C	G	24470289	3	3	929	1	0	0	0	0	1	0	0	0	4530	913	32	2	545	2	DHRS4L2	14	24470289	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		24470289	82879251	29	75033										
RNF31	0	genome.wustl.edu	37	chr14	24617078	24617078	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ctggacgccgcacgccttgtCcgctgcaacgctcatgggga	13	15	1	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	14	24617078	24617078	C	T	SNP	RNF31	ENST00000324103	human	ensembl	69_37n	1	known	silent	c.171	p.V57	0.998	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098	32	0	0	31	8	20.51	-	-	-	T	24617078	C	T	24617078	2	4	929	1	0	0	0	0	0	0	0	1	13573	842	30	2		2	RNF31	14	24617078	Silent	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	146789	24617078	82732462	30	75034										
WDR61	0	genome.wustl.edu	37	chr15	78580711	78580711	+	Frame_Shift_Del	DEL	G	G	-													0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gaaaaggtcaaggagcgaatGggcatggcatggcctgaaat							TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	15	78580711	78580711	G	-	DEL	WDR61	ENST00000267973	human	ensembl	69_37n	-1	known	frame_shift_del	c.576	p.I193fs	1.000	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR61	HGNC	ENSG00000140395	97	0	0	98	19	16.1	-	-	-	-	78580711	G	-	78580711	7	5	929	1	0	1	0	1	0	0	0	0	17409	1335	47	0	357	0	WDR61	15	78580711	Frame_Shift_Del	DEL	G	TCGA-GM-A2DD-01A-11D-A17W-09		78580711	23950681	31	75035										
SALL1	0	genome.wustl.edu	37	chr16	51175656	51175658	+	In_Frame_Del	DEL	GCT	GCT	-													0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gaggagctgccgccgccgccGctgctgctgctgctgctgct							TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	16	51175656	51175658	GCT	-	DEL	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	in_frame_del	c.477_475	p.S159in_frame_del	0.007:0.009:0.009	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	43	0	0	57	24	29.63	-	-	-	-	51175658	GCT	-	51175656	7	5	929	1	0	1	0	1	0	0	0	0	13896	1078	38	0	3505	0	SALL1	16	51175656	In_Frame_Del	DEL	GCT	TCGA-GM-A2DD-01A-11D-A17W-09		51175656	39179097	32	75036										
NLRC5	0	genome.wustl.edu	37	chr16	57063982	57063982	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gtcacgtgtcctaccgtcagGatgcttcaggccaggtgagc	13	12	3	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	16	57063982	57063982	G	C	SNP	NLRC5	ENST00000262510	human	ensembl	69_37n	1	known	missense	c.2403	p.R801S	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	65	0	0	80	10	11.11	-	-	-	C	57063982	G	C	57063982	3	2	929	1	0	0	0	0	1	0	0	0	10542	1165	41	2	2433	2	NLRC5	16	57063982	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09	5888326	57063982	33290771	33	75037										
CDH1	0	genome.wustl.edu	37	chr16	68844164	68844164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	tccaatggagattttgatcaCggtaaccgatcagaatgaca	9	8	2	4			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	16	68844164	68844164	C	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.752	p.T251K	0.928	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	59	0	0	60	9	13.04	-	-	-	A	68844164	C	A	68844164	3	1	929	1	0	0	0	0	1	0	0	0	3124	536	19	3	774	3	CDH1	16	68844164	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09	11780182	68844164	21510589	34	75038										
TP53	0	genome.wustl.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	36	0	0	15	11	42.31	-	-	-	T	7578406	C	T	7578406	3	4	929	1	0	0	0	0	1	0	0	0	16477	768	27	1	774	1	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		7578406	73616804	35	75039										
SLC46A1	0	genome.wustl.edu	37	chr17	26729308	26729308	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	ttagcccggatgacaggtgtGatgactaatgacaggaaaag	13	6	0	4			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	17	26729308	26729308	G	A	SNP	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	silent	c.1113	p.I371	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	84	0	0	44	27	38.03	-	-	-	A	26729308	G	A	26729308	2	1	929	1	0	0	0	0	0	0	0	1	14733	1280	45	2		2	SLC46A1	17	26729308	Silent	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09	19150902	26729308	54465902	36	75040										
CDK12	0	genome.wustl.edu	37	chr17	37619062	37619062	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gcttcttatggccaagattaTgaccttagtccctcacgatc	7	12	2	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	17	37619062	37619062	T	A	SNP	CDK12	ENST00000447079	human	ensembl	69_37n	1	known	nonsense	c.738	p.Y246*	0.856	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	22	0	0	5	7	58.33	-	-	-	A	37619062	T	A	37619062	4	1	929	1	0	0	0	0	0	1	0	0	3157	1471	51	5	740	5	CDK12	17	37619062	Nonsense_Mutation	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	10889754	37619062	43576148	37	75041										
ZADH2	0	genome.wustl.edu	37	chr18	72913658	72913658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	caatgttcctgctttcacagGcgaaaggccagtaggagttt	11	9	1	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	18	72913658	72913658	G	A	SNP	ZADH2	ENST00000322342	human	ensembl	69_37n	-1	known	missense	c.847	p.P283S	0.088	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011	57	0	0	51	9	15	-	-	-	A	72913658	G	A	72913658	3	1	929	1	0	0	0	0	1	0	0	0	17608	1203	42	4	290	4	ZADH2	18	72913658	Missense_Mutation	SNP	G	TCGA-GM-A2DD-01A-11D-A17W-09		72913658	5163590	38	75042										
PTPRA	0	genome.wustl.edu	37	chr20	3007821	3007821	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gggcgaagagaatacagactAtgtgaacgcatcctttattg	11	7	0	3			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	20	3007821	3007821	A	T	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.1796	p.Y599F	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	121	0	0	122	14	10.29	-	-	-	T	3007821	A	T	3007821	3	4	929	1	0	0	0	0	1	0	0	0	12878	449	16	5	1825	5	PTPRA	20	3007821	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09		3007821	60017699	39	75043										
UBA1	0	genome.wustl.edu	37	chrX	47061598	47061598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gacacctccaacttctccgaCtacatccgtggaggcatcgt	8	15	1	0			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	X	47061598	47061598	C	T	SNP	UBA1	ENST00000335972	human	ensembl	69_37n	1	known	silent	c.855	p.D285	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985	87	0	0	69	10	12.66	-	-	-	T	47061598	C	T	47061598	2	4	929	1	0	0	0	0	0	0	0	1	16924	564	20	4		4	UBA1	23	47061598	Silent	SNP	C	TCGA-GM-A2DD-01A-11D-A17W-09		47061598	108208962	40	75044										
SYN1	0	genome.wustl.edu	37	chrX	47436041	47436041	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	gctggttgtcaaccttgaccTgtggaagtgcgggcaaggat	15	8	1	1			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	X	47436041	47436041	T	A	SNP	SYN1	ENST00000295987	human	ensembl	69_37n	-1	known	splice_site	c.838-2	e7-2	0.998	-	-	-	no_errors	SYN1	HGNC	ENSG00000008056	75	0	0	37	19	33.93	-	-	-	A	47436041	T	A	47436041	5	1	929	1	0	0	0	0	0	0	1	0	15532	1594	55	5	1309	5	SYN1	23	47436041	Splice_Site	SNP	T	TCGA-GM-A2DD-01A-11D-A17W-09	374443	47436041	107834519	41	75045										
FAM120C	0	genome.wustl.edu	37	chrX	54142996	54142996	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	accggagtacacaacacatgAgcagcagatgggtggggaca	14	9	0	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	X	54142996	54142996	A	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2294	p.L765P	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	70	0	0	49	14	22.22	-	-	-	G	54142996	A	G	54142996	3	3	929	1	0	0	0	0	1	0	0	0	5458	304	11	5	1024	5	FAM120C	23	54142996	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09	6706955	54142996	101127564	42	75046										
IDS	0	genome.wustl.edu	37	chrX	148584821	148584821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0697674418604651	3	0.904872247913239	0.937157471684326	1.19747899159664	0.845279288185863	1	1	0	cacaaaccaagagaacccagActctggacatggagcagtac	9	12	1	2			TCGA-GM-A2DD-01A-11D-A17W-09	TCGA-GM-A2DD-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42a8b6bb-6b28-4663-8b48-2928fa8c71c2	f86d9ca8-d705-4041-bdde-f7e3014f8ae3	X	148584821	148584821	A	G	SNP	IDS	ENST00000428056	human	ensembl	69_37n	-1	known	missense	c.439	p.S147P	0.001	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	108	0	0	71	36	33.03	-	-	-	G	148584821	A	G	148584821	3	3	929	1	0	0	0	0	1	0	0	0	7557	290	10	5		5	IDS	23	148584821	Missense_Mutation	SNP	A	TCGA-GM-A2DD-01A-11D-A17W-09	94441825	148584821	6685739	43	75047										
PTPRF	0	genome.wustl.edu	37	chr1	44086512	44086512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ccacccacctttcccaggatGggcagtcaaggacaatccgg	10	15	1	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	44086512	44086512	G	C	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	1	known	missense	c.5368	p.G1790R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	72	0	0	50	10	16.67	-	-	-	C	44086512	G	C	44086512	3	2	930	1	0	0	0	0	1	0	0	0	12884	1348	47	4	5486	4	PTPRF	1	44086512	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		44086512	205164109	1	75048										
DENND4B	0	genome.wustl.edu	37	chr1	153912704	153912704	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	gggtctgcggggcagggtccGaggggagaggagcttctttt	20	7	2	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	153912704	153912704	G	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.1531	p.R511G	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	88	0	0	63	9	12.5	-	-	-	C	153912704	G	C	153912704	3	2	930	1	0	0	0	0	1	0	0	0	4470	1057	37	3	3031	3	DENND4B	1	153912704	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	109826192	153912704	95337917	2	75049										
RXRG	0	genome.wustl.edu	37	chr1	165380213	165380213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tccatattcatgtcaccataGgattctgtctttggttcaac	6	10	5	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	165380213	165380213	G	A	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.756	p.S252	0.999	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	112	0	0	116	13	10.08	-	-	-	A	165380213	G	A	165380213	2	1	930	1	0	0	0	0	0	0	0	1	13851	987	35	4		4	RXRG	1	165380213	Silent	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	11467509	165380213	83870408	3	75050										
C1orf114	0	genome.wustl.edu	37	chr1	169391472	169391472	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	gcaaagatttgtcaggatcaGaatgccgtttggtgtgctcc	12	8	2	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	169391472	169391472	G	C	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.197	p.S66C	0.303	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	95	0	0	95	14	12.84	-	-	-	C	169391472	G	C	169391472	3	2	930	1	0	0	0	0	1	0	0	0	2006	942	33	2	1345	2	C1orf114	1	169391472	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	4011259	169391472	79859149	4	75051										
ZNF496	0	genome.wustl.edu	37	chr1	247464502	247464502	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ccatgctgggagtcctcgtcCccagagctggagagaacgat	13	12	0	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	247464502	247464502	C	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	silent	c.1191	p.G397	0.709	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	49	0	0	31	6	16.22	-	-	-	A	247464502	C	A	247464502	2	1	930	1	0	0	0	0	0	0	0	1	18041	610	22	4		4	ZNF496	1	247464502	Silent	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	78073030	247464502	1786119	5	75052										
MARCO	0	genome.wustl.edu	37	chr2	119750776	119750776	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	gtttactacagtggtacctgGgggacaatttgcgatgacga	13	7	0	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	2	119750776	119750776	G	A	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	1	known	nonsense	c.1329	p.W443*	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Collagen,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MARCO	HGNC	ENSG00000019169	112	0	0	102	13	11.3	-	-	-	A	119750776	G	A	119750776	4	1	930	1	0	0	0	0	0	1	0	0	9382	1241	43	4	1391	4	MARCO	2	119750776	Nonsense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		119750776	123448597	6	75053										
THSD7B	0	genome.wustl.edu	37	chr2	138000041	138000041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tgacagatgtccagattctaCtcgacctgaaactgtgcgcc	9	12	1	4			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	2	138000041	138000041	C	G	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.2165	p.T722S	0.217	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	172	0	0	86	20	18.87	-	-	-	G	138000041	C	G	138000041	3	3	930	1	0	0	0	0	1	0	0	0	15975	565	20	4	2106	4	THSD7B	2	138000041	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	18249265	138000041	105199332	7	75054										
OGG1	0	genome.wustl.edu	37	chr3	9798276	9798276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	taccacgtcccaggcgaaggGaccgagcccccagaccaaca	10	17	0	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	9798276	9798276	G	A	SNP	OGG1	ENST00000302036	human	ensembl	69_37n	1	known	missense	c.869	p.G290E	0.129	superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026	42	0	0	34	16	32	-	-	-	A	9798276	G	A	9798276	3	1	930	1	0	0	0	0	1	0	0	0	10918	1174	41	2	887	2	OGG1	3	9798276	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		9798276	188224154	8	75055										
AZI2	0	genome.wustl.edu	37	chr3	28381938	28381938	+	Frame_Shift_Del	DEL	T	T	-													0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ttctttaacaaagagttctcTttctctgaatccttaagtcg							TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	28381938	28381938	T	-	DEL	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	frame_shift_del	c.171	p.E58fs	0.998	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	118	0	0	108	14	11.38	-	-	-	-	28381938	T	-	28381938	7	5	930	1	0	1	0	1	0	0	0	0	1245	1606	56	0	1124	0	AZI2	3	28381938	Frame_Shift_Del	DEL	T	TCGA-GM-A2DF-01A-11D-A17W-09	18583662	28381938	169640492	9	75056										
GLB1	0	genome.wustl.edu	37	chr3	33055654	33055654	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ccgggagcgtgtagttggatGagttgtgggcccaggcttca	17	8	1	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	33055654	33055654	G	A	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.1772	p.S591L	0.011	superfamily_Galactose-bd-like	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	104	0	0	61	41	40.2	-	-	-	A	33055654	G	A	33055654	3	1	930	1	0	0	0	0	1	0	0	0	6479	1294	45	2	413	2	GLB1	3	33055654	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	4673716	33055654	164966776	10	75057										
SETD2	0	genome.wustl.edu	37	chr3	47163294	47163294	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ttacgcctgttctccctggaAgcaaatccctttcctgaatc	6	14	1	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	47163294	47163294	A	C	SNP	SETD2	ENST00000445387	human	ensembl	69_37n	-1	known	missense	c.1732	p.F578V	0.134	NULL	pfam_SET_dom,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SETD2	HGNC	ENSG00000181555	93	0	0	52	11	17.46	-	-	-	C	47163294	A	C	47163294	3	2	930	1	0	0	0	0	1	0	0	0	14219	59	3	5	4938	5	SETD2	3	47163294	Missense_Mutation	SNP	A	TCGA-GM-A2DF-01A-11D-A17W-09	14107640	47163294	150859136	11	75058										
C3orf30	0	genome.wustl.edu	37	chr3	118865255	118865255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	atatttagccaagctaccaaCggagtagctgaacaaaatgg	9	8	0	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	118865255	118865255	C	T	SNP	C3orf30	ENST00000460150	human	ensembl	69_37n	1	putative	missense	c.109	p.R37W	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C3orf30	HGNC	ENSG00000163424	34	0	0	18	4	18.18	-	-	-	T	118865255	C	T	118865255	3	4	930	1	0	0	0	0	1	0	0	0	2240	535	19	1	221	1	C3orf30	3	118865255	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	71701961	118865255	79157175	12	75059										
SPINK5	0	genome.wustl.edu	37	chr5	147477448	147477448	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	agaaactctgcagtcaatatCaaaatcaggcaaagaatgga	8	7	4	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	5	147477448	147477448	C	G	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	1	known	missense	c.901	p.Q301E	0.026	smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	108	0	0	73	21	22.34	-	-	-	G	147477448	C	G	147477448	3	3	930	1	0	0	0	0	1	0	0	0	15153	827	29	2	943	2	SPINK5	5	147477448	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		147477448	33437812	13	75060										
RIOK1	0	genome.wustl.edu	37	chr6	7393371	7393371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	acagtcaaagagaaggatgaCattctgtttgaagaccttca	9	7	3	4			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	6	7393371	7393371	C	T	SNP	RIOK1	ENST00000379834	human	ensembl	69_37n	1	known	silent	c.111	p.D37	0.000	pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784	103	0	0	128	18	12.33	-	-	-	T	7393371	C	T	7393371	2	4	930	1	0	0	0	0	0	0	0	1	13463	477	17	4		4	RIOK1	6	7393371	Silent	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		7393371	163721696	14	75061										
DEF6	0	genome.wustl.edu	37	chr6	35277530	35277530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	cacttccgagatgatgatgaCggccctgtgtccagccaggg	13	12	0	4			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	6	35277530	35277530	C	T	SNP	DEF6	ENST00000444278	human	ensembl	69_37n	1	known	missense	c.16	p.R6W	0.753	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	DEF6	HGNC	ENSG00000023892	65	0	0	61	24	28.24	-	-	-	T	35277530	C	T	35277530	3	4	930	1	0	0	0	0	1	0	0	0	4417	535	19	1	186	1	DEF6	6	35277530	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	27884159	35277530	135837537	15	75062										
DDX21	0	genome.wustl.edu	37	chr10	70723131	70723131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ggacttaattgcacaggcacGgacaggaactgggaagacat	13	8	0	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	10	70723131	70723131	G	A	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	1	known	missense	c.692	p.R231Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	106	0	0	73	9	10.98	-	-	-	A	70723131	G	A	70723131	3	1	930	1	0	0	0	0	1	0	0	0	4380	1116	39	1	706	1	DDX21	10	70723131	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		70723131	64811616	16	75063										
OR4D6	0	genome.wustl.edu	37	chr11	59225149	59225149	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	gcggaacaaggccctctccaCgtgcacgtcccacatgctgg	11	16	1	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	11	59225149	59225149	C	A	SNP	OR4D6	ENST00000300127	human	ensembl	69_37n	1	known	missense	c.716	p.T239K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	92	0	0	68	10	12.82	-	-	-	A	59225149	C	A	59225149	3	1	930	1	0	0	0	0	1	0	0	0	11131	536	19	3	718	3	OR4D6	11	59225149	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		59225149	75781367	17	75064										
OR10G4	0	genome.wustl.edu	37	chr11	123886964	123886964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ctgttccatcctgcggatccGcacctcagatgggaggcgca	12	14	1	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	11	123886964	123886964	G	A	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	missense	c.683	p.R228H	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	329	0	0	178	45	20.18	-	-	-	A	123886964	G	A	123886964	3	1	930	1	0	0	0	0	1	0	0	0	10974	1087	38	1	685	1	OR10G4	11	123886964	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	64661815	123886964	11119552	18	75065										
LRP6	0	genome.wustl.edu	37	chr12	12397448	12397448	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	cttcgctgacatcactccagTatatcaagccatgactaaac	5	13	2	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	12	12397448	12397448	T	C	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.197	p.Y66C	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	126	0	0	84	19	18.27	-	-	-	C	12397448	T	C	12397448	3	2	930	1	0	0	0	0	1	0	0	0	9028	1638	57	5	4732	5	LRP6	12	12397448	Missense_Mutation	SNP	T	TCGA-GM-A2DF-01A-11D-A17W-09		12397448	121454447	19	75066										
ING1	0	genome.wustl.edu	37	chr13	111366554	111366554	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tgaactatgtggaggactacCtggactccatcgagtccctg	11	11	0	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111366554	111366554	C	G	SNP	ING1	ENST00000333219	human	ensembl	69_37n	1	known	missense	c.58	p.L20V	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	31	0	0	23	60	72.29	-	-	-	G	111366554	C	G	111366554	3	3	930	1	0	0	0	0	1	0	0	0	7789	680	24	4	68	4	ING1	13	111366554	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		111366554	3803324	20	75067										
ING1	0	genome.wustl.edu	37	chr13	111368180	111368180	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	cccctgcccctctccccgctCagcccggccactttcgggcg	9	23	2	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111368180	111368180	C	G	SNP	ING1	ENST00000375774	human	ensembl	69_37n	1	known	silent	c.390	p.L130	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	14	0	0	20	58	74.36	-	-	-	G	111368180	C	G	111368180	2	3	930	1	0	0	0	0	0	0	0	1	7789	813	29	2		2	ING1	13	111368180	Silent	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	1626	111368180	3801698	21	75068										
ARHGEF7	0	genome.wustl.edu	37	chr13	111927099	111927099	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	attatcatacagatagacaaGatattcaaaaatccatggct	5	7	2	3			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111927099	111927099	G	A	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	missense	c.1297	p.D433N	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	166	0	0	104	57	35.4	-	-	-	A	111927099	G	A	111927099	3	1	930	1	0	0	0	0	1	0	0	0	913	942	33	2	1343	2	ARHGEF7	13	111927099	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	558919	111927099	3242779	22	75069										
SLC24A4	0	genome.wustl.edu	37	chr14	92922791	92922791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	caatggtgtgagcagtaagcCgcttcaaaacgggaggcacg	14	9	1	1			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	14	92922791	92922791	C	T	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	1	known	missense	c.1094	p.P365L	0.981	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	50	0	0	34	5	12.82	-	-	-	T	92922791	C	T	92922791	3	4	930	1	0	0	0	0	1	0	0	0	14557	652	23	1	1089	1	SLC24A4	14	92922791	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		92922791	14426749	23	75070										
DISP2	0	genome.wustl.edu	37	chr15	40661552	40661552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	aggcgtgctcatgctgcctgCcacagtgctgctctatcgca	11	14	2	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	15	40661552	40661552	C	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	1	known	missense	c.3239	p.A1080V	1.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	36	0	0	17	5	22.73	-	-	-	T	40661552	C	T	40661552	3	4	930	1	0	0	0	0	1	0	0	0	4576	739	26	4	3269	4	DISP2	15	40661552	Missense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		40661552	61869840	24	75071										
TP53	0	genome.wustl.edu	37	chr17	7577610	7577610	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tggtacagtcagagccaaccTaggagataacacaggcccaa	10	11	1	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	17	7577610	7577610	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.673-2	e6-2	0.999	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0	33	11	25	-	-	-	C	7577610	T	C	7577610	5	2	930	1	0	0	0	0	0	0	1	0	16477	1536	53	5	619	5	TP53	17	7577610	Splice_Site	SNP	T	TCGA-GM-A2DF-01A-11D-A17W-09		7577610	73617600	25	75072										
EMR2	0	genome.wustl.edu	37	chr19	14865766	14865766	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tcccctcctaagggtctcacCtgcacatcgtagtgggccat	9	15	1	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	14865766	14865766	C	A	SNP	EMR2	ENST00000392964	human	ensembl	69_37n	-1	known	nonsense	c.583	p.G195*	0.999	NULL	prints_GPCR_2_CD97	-	no_errors	EMR2	HGNC	ENSG00000127507	61	0	0	30	11	26.83	-	-	-	A	14865766	C	A	14865766	4	1	930	1	0	0	0	0	0	1	0	0	5142	695	24	4	913	4	EMR2	19	14865766	Nonsense_Mutation	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09		14865766	44263217	26	75073										
KLHL26	0	genome.wustl.edu	37	chr19	18779780	18779780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	accacgtggaccgctgcttcGacgtgctggctgtggagtac	14	12	0	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	18779780	18779780	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	69_37n	1	known	missense	c.1573	p.D525N	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487	23	0	0	9	5	35.71	-	-	-	A	18779780	G	A	18779780	3	1	930	1	0	0	0	0	1	0	0	0	8434	1058	37	1	1583	1	KLHL26	19	18779780	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	3914014	18779780	40349203	27	75074										
RASIP1	0	genome.wustl.edu	37	chr19	49230688	49230688	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	ccaatttccttaatcttttcCtgtggaacagtaagatcaga	6	9	2	2			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	49230688	49230688	C	T	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	splice_site	c.1834-1	e5-1	1.000	-	-	-	no_errors	RASIP1	HGNC	ENSG00000105538	87	0	0	46	15	24.59	-	-	-	T	49230688	C	T	49230688	5	4	930	1	0	0	0	0	0	0	1	0	13161	695	24	4	1086	4	RASIP1	19	49230688	Splice_Site	SNP	C	TCGA-GM-A2DF-01A-11D-A17W-09	30450908	49230688	9898295	28	75075										
SNAP25	0	genome.wustl.edu	37	chr20	10279990	10279990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	cggcatcatcgggaacctccGtcacatggccctggatatgg	12	13	2	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	20	10279990	10279990	G	A	SNP	SNAP25	ENST00000254976	human	ensembl	69_37n	1	known	missense	c.482	p.R161H	1.000	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639	57	0	0	36	6	14.29	-	-	-	A	10279990	G	A	10279990	3	1	930	1	0	0	0	0	1	0	0	0	14919	1145	40	1	626	1	SNAP25	20	10279990	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		10279990	52745530	29	75076										
ATP2B3	0	genome.wustl.edu	37	chrX	152825329	152825329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	cgacaagcccctcatctcccGcaccatgatgaagaacattc	6	16	2	3			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	X	152825329	152825329	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	missense	c.2768	p.R923H	0.785	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	82	0	0	69	16	18.82	-	-	-	A	152825329	G	A	152825329	3	1	930	1	0	0	0	0	1	0	0	0	1145	1087	38	1	2830	1	ATP2B3	23	152825329	Missense_Mutation	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09		152825329	2445231	30	75077										
DKC1	0	genome.wustl.edu	37	chrX	153996568	153996568	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.161290322580645	5	0.47028209211012	1.65904471544715	3.41289198606272	0.93687230989957	1	1	0	tgcttttcttttgtgtgtgtGtatcttaggaatcttttggg	11	4	3	0			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	X	153996568	153996568	G	A	SNP	DKC1	ENST00000437719	human	ensembl	69_37n	1	novel	silent	c.621	p.V207	0.000	superfamily_PsdUridine_synth_cat_dom,tigrfam_Pseudouridine_synthase-related	pfam_Dyskerin-like,pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_Pseudouridine_synthase-related	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DKC1	HGNC	ENSG00000130826	257	0	0	248	33	11.7	-	-	-	A	153996568	G	A	153996568	2	1	930	1	0	0	0	0	0	0	0	1	4578	1392	48	4		4	DKC1	23	153996568	Silent	SNP	G	TCGA-GM-A2DF-01A-11D-A17W-09	1171239	153996568	1273992	31	75078										
ASAP3	0	genome.wustl.edu	37	chr1	23763508	23763508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gcactggatgcaggtgagcaCgcccaggttggtgctgagcc	16	11	0	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	23763508	23763508	C	A	SNP	ASAP3	ENST00000336689	human	ensembl	69_37n	-1	known	missense	c.1372	p.V458L	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	14	0	0	18	11	37.93	-	-	-	A	23763508	C	A	23763508	3	1	931	1	0	0	0	0	1	0	0	0	1016	536	19	3	1383	3	ASAP3	1	23763508	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09		23763508	225487113	1	75079										
TRIT1	0	genome.wustl.edu	37	chr1	40348988	40348988	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgggccagccgcactgccatAcctgcatggagtcagcgctg	13	15	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	40348988	40348988	A	T	SNP	TRIT1	ENST00000316891	human	ensembl	69_37n	-1	known	splice_site	c.174+2	e1+2	1.000	-	-	-	no_errors	TRIT1	HGNC	ENSG00000043514	26	0	0	28	6	17.65	-	-	-	T	40348988	A	T	40348988	5	4	931	1	0	0	0	0	0	0	1	0	16656	405	14	5	1271	5	TRIT1	1	40348988	Splice_Site	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	16585480	40348988	208901633	2	75080										
LRP8	0	genome.wustl.edu	37	chr1	53736931	53736931	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tctggtccaggagctggaagCctgctgggcacgtgcattca	14	11	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	53736931	53736931	C	G	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.1094	p.G365A	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	79	0	0	60	10	14.29	-	-	-	G	53736931	C	G	53736931	3	3	931	1	0	0	0	0	1	0	0	0	9029	739	26	4	1849	4	LRP8	1	53736931	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	13387943	53736931	195513690	3	75081										
ELTD1	0	genome.wustl.edu	37	chr1	79403528	79403528	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgtatcaaactctgtggtctTttggaagctctgggatatcc	10	8	4	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	79403528	79403528	T	A	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	nonsense	c.724	p.K242*	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	112	0	0	87	40	31.5	-	-	-	A	79403528	T	A	79403528	4	1	931	1	0	0	0	0	0	1	0	0	5121	1850	64	5	1388	5	ELTD1	1	79403528	Nonsense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09	25666597	79403528	169847093	4	75082										
ABCD3	0	genome.wustl.edu	37	chr1	94955532	94955532	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	attgcagataacattataaaGtacgtacagaaaaaggtctt	7	5	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	94955532	94955532	G	C	SNP	ABCD3	ENST00000454898	human	ensembl	69_37n	1	known	splice_site	c.1394+1	e16+1	1.000	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528	69	0	0	61	10	14.08	-	-	-	C	94955532	G	C	94955532	5	2	931	1	0	0	0	0	0	0	1	0	62	1043	36	4	1412	4	ABCD3	1	94955532	Splice_Site	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	15552004	94955532	154295089	5	75083										
CD1E	0	genome.wustl.edu	37	chr1	158325222	158325222	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gccatctccaggagcagggaTccgggcccagaacatctgta	12	13	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	158325222	158325222	T	A	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	missense	c.488	p.I163N	0.026	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	54	0	0	85	23	21.3	-	-	-	A	158325222	T	A	158325222	3	1	931	1	0	0	0	0	1	0	0	0	3007	1435	50	5	498	5	CD1E	1	158325222	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09	63369690	158325222	90925399	6	75084										
SPTA1	0	genome.wustl.edu	37	chr1	158637828	158637828	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aaagacttgctgcttttgaaCcctgctcttcaagttctgta	7	10	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	158637828	158637828	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1858	p.V620L	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	166	0	0	190	32	14.41	-	-	-	G	158637828	C	G	158637828	3	3	931	1	0	0	0	0	1	0	0	0	15207	507	18	4	5553	4	SPTA1	1	158637828	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	312606	158637828	90612793	7	75085										
HMCN1	0	genome.wustl.edu	37	chr1	185902681	185902681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aattttttgatttcacacagAgccccctccggtcatccaag	6	13	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	185902681	185902681	A	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	missense	c.1553	p.E518V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	113	0	0	149	23	13.29	-	-	-	T	185902681	A	T	185902681	3	4	931	1	0	0	0	0	1	0	0	0	7271	318	11	5	1595	5	HMCN1	1	185902681	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	27264853	185902681	63347940	8	75086										
RPS6KC1	0	genome.wustl.edu	37	chr1	213405469	213405469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tttttgttctctgtcagggtCtaaggaaaagcagtgaatac	10	6	3	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	213405469	213405469	C	G	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	1	known	missense	c.1096	p.L366V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	120	0	0	114	15	11.63	-	-	-	G	213405469	C	G	213405469	3	3	931	1	0	0	0	0	1	0	0	0	13744	912	32	2	1134	2	RPS6KC1	1	213405469	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	27502788	213405469	35845152	9	75087										
C1orf31	0	genome.wustl.edu	37	chr1	234510115	234510115	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agttaagaagctctttcgaaTcaagttgtccccaacagtgg	9	9	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	234510115	234510115	T	A	SNP	C1orf31	ENST00000366615	human	ensembl	69_37n	1	known	missense	c.352	p.S118T	0.972	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	C1orf31	HGNC	ENSG00000168275	83	0	0	76	9	10.59	-	-	-	A	234510115	T	A	234510115	3	1	931	1	0	0	0	0	1	0	0	0	2057	1435	50	5	268	5	C1orf31	1	234510115	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09	21104646	234510115	14740506	10	75088										
TRMT61B	0	genome.wustl.edu	37	chr2	29092829	29092829	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	caccggccctggtctccgctCgagtcctcgagctctcgagg	12	17	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	29092829	29092829	C	G	SNP	TRMT61B	ENST00000306108	human	ensembl	69_37n	-1	known	silent	c.315	p.S105	0.000	NULL	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	-	no_errors	TRMT61B	HGNC	ENSG00000171103	73	0	0	57	14	19.72	-	-	-	G	29092829	C	G	29092829	2	3	931	1	0	0	0	0	0	0	0	1	16666	871	31	3		3	TRMT61B	2	29092829	Silent	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09		29092829	214106544	11	75089										
FAM179A	0	genome.wustl.edu	37	chr2	29240092	29240092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgaaggagatggagctgcttCggaggctggaggagcccagg	19	7	0	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	29240092	29240092	C	T	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	1	known	missense	c.1117	p.R373W	0.000	NULL	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	36	0	0	69	15	17.86	-	-	-	T	29240092	C	T	29240092	3	4	931	1	0	0	0	0	1	0	0	0	5545	875	31	1	1147	1	FAM179A	2	29240092	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	147263	29240092	213959281	12	75090										
SLC8A1	0	genome.wustl.edu	37	chr2	40392055	40392055	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgtgctctcccaggatggggCgccccatttctgcaatgcgc	12	14	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	40392055	40392055	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.2108	p.R703L	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	148	0	0	142	56	28.28	-	-	-	A	40392055	C	A	40392055	3	1	931	1	0	0	0	0	1	0	0	0	14795	768	27	3	829	3	SLC8A1	2	40392055	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	11151963	40392055	202807318	13	75091										
CCDC88A	0	genome.wustl.edu	37	chr2	55562132	55562132	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ttttttaatttgtcttttttCaaattcaatcttgcttagct	3	6	4	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	55562132	55562132	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.1825	p.E609Q	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	109	0	0	89	19	17.59	-	-	-	G	55562132	C	G	55562132	3	3	931	1	0	0	0	0	1	0	0	0	2890	835	29	2	3862	2	CCDC88A	2	55562132	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	15170077	55562132	187637241	14	75092										
C2orf40	0	genome.wustl.edu	37	chr2	106694341	106694341	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ttggtccccggagcccctacGgctttaggcatggagccagc	13	14	0	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	106694341	106694341	G	T	SNP	C2orf40	ENST00000238044	human	ensembl	69_37n	1	known	missense	c.406	p.G136C	0.132	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147	82	0	0	57	41	41.84	-	-	-	T	106694341	G	T	106694341	3	4	931	1	0	0	0	0	1	0	0	0	2185	1116	39	3	420	3	C2orf40	2	106694341	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	51132209	106694341	136505032	15	75093										
FAM123C	0	genome.wustl.edu	37	chr2	131520463	131520463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgagggcccggagagcccaaCccaggctgctcagggcctgg	16	15	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	131520463	131520463	C	T	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	1	known	missense	c.818	p.T273I	0.003	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	24	0	0	26	11	28.95	-	-	-	T	131520463	C	T	131520463	3	4	931	1	0	0	0	0	1	0	0	0	5464	507	18	4	820	4	FAM123C	2	131520463	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	24826122	131520463	111678910	16	75094										
TTN	0	genome.wustl.edu	37	chr2	179435073	179435073	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agcttagtaaccttgcagctGagagtctgcacattggcatc	10	10	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	179435073	179435073	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.68082	p.L22694	0.503	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	83	0	0	102	17	14.29	-	-	-	C	179435073	G	C	179435073	2	2	931	1	0	0	0	0	0	0	0	1	16832	1277	45	2		2	TTN	2	179435073	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	47914610	179435073	63764300	17	75095										
TTN	0	genome.wustl.edu	37	chr2	179616522	179616522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgattgttatgaaaccaagtCatttctggagttggacaggc	11	7	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	179616522	179616522	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.10605	p.M3535I	0.925	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	45	0	0	48	25	34.25	-	-	-	T	179616522	C	T	179616522	3	4	931	1	0	0	0	0	1	0	0	0	16832	826	29	2	99692	2	TTN	2	179616522	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	181449	179616522	63582851	18	75096										
ANKAR	0	genome.wustl.edu	37	chr2	190559825	190559825	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgaaaagacttccactgacaGatgctcaattacatgaacaa	6	9	1	5			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	190559825	190559825	G	A	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.1426	p.D476N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	97	0	0	106	20	15.87	-	-	-	A	190559825	G	A	190559825	3	1	931	1	0	0	0	0	1	0	0	0	623	942	33	2	1444	2	ANKAR	2	190559825	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	10943303	190559825	52639548	19	75097										
ALS2	0	genome.wustl.edu	37	chr2	202571627	202571627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ctgcttatttagtcgaaggaCacattcccagtaaatgtctt	7	9	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	202571627	202571627	C	T	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	missense	c.4522	p.V1508I	1.000	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	59	0	0	83	14	14.29	-	-	-	T	202571627	C	T	202571627	3	4	931	1	0	0	0	0	1	0	0	0	550	478	17	4	475	4	ALS2	2	202571627	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	12011802	202571627	40627746	20	75098										
ATG9A	0	genome.wustl.edu	37	chr2	220088405	220088405	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gtttcggaagaagtctataaTctccagggcccgtgggcgca	13	10	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	220088405	220088405	T	G	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	missense	c.1501	p.I501L	1.000	pfam_Autophagy-rel_prot_9	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	44	0	0	57	20	25.97	-	-	-	G	220088405	T	G	220088405	3	3	931	1	0	0	0	0	1	0	0	0	1106	1435	50	5	1046	5	ATG9A	2	220088405	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09	17516778	220088405	23110968	21	75099										
SCN11A	0	genome.wustl.edu	37	chr3	38889049	38889049	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tagataaacataatcagaaaGagtagaagaccaatgttgaa	8	4	1	6			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	38889049	38889049	G	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	silent	c.4512	p.L1504	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	73	0	0	73	11	13.1	-	-	-	C	38889049	G	C	38889049	2	2	931	1	0	0	0	0	0	0	0	1	14001	929	33	2		2	SCN11A	3	38889049	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		38889049	159133381	22	75100										
HHATL	0	genome.wustl.edu	37	chr3	42739047	42739047	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgaacttgaggtcgctggggAtagtgaggatgtagaagaag	17	4	0	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	42739047	42739047	A	T	SNP	HHATL	ENST00000310417	human	ensembl	69_37n	-1	known	missense	c.818	p.I273N	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282	98	0	0	61	11	15.07	-	-	-	T	42739047	A	T	42739047	3	4	931	1	0	0	0	0	1	0	0	0	7141	333	12	5	720	5	HHATL	3	42739047	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	3849998	42739047	155283383	23	75101										
CCBP2	0	genome.wustl.edu	37	chr3	42906469	42906469	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	accacaggctgaggacccggGccaagagcctgctccttgct	12	15	0	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	42906469	42906469	G	C	SNP	CCBP2	ENST00000273145	human	ensembl	69_37n	1	known	missense	c.475	p.A159P	0.024	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCBP2	HGNC	ENSG00000144648	68	0	0	46	13	22.03	-	-	-	C	42906469	G	C	42906469	3	2	931	1	0	0	0	0	1	0	0	0	2759	1203	42	4	477	4	CCBP2	3	42906469	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	167422	42906469	155115961	24	75102										
RAD54L2	0	genome.wustl.edu	37	chr3	51664762	51664762	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gagaggaggacactctgcacAttgtggacagcagtgaatct	13	8	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	51664762	51664762	A	C	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	1	known	missense	c.640	p.I214L	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	57	0	0	67	13	16.25	-	-	-	C	51664762	A	C	51664762	3	2	931	1	0	0	0	0	1	0	0	0	13077	217	8	5	658	5	RAD54L2	3	51664762	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	8758293	51664762	146357668	25	75103										
IMPG2	0	genome.wustl.edu	37	chr3	100962731	100962731	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tggttggaggcaatttggtaGactgtgtcacagataaccag	13	6	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	100962731	100962731	G	C	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.2444	p.S815C	0.997	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	50	0	0	66	9	12	-	-	-	C	100962731	G	C	100962731	3	2	931	1	0	0	0	0	1	0	0	0	7783	942	33	2	1309	2	IMPG2	3	100962731	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	49297969	100962731	97059699	26	75104										
BBX	0	genome.wustl.edu	37	chr3	107492012	107492012	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agaggcagtcttcggaatctGacattgagagcgtcatatat	11	7	3	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	107492012	107492012	G	T	SNP	BBX	ENST00000325805	human	ensembl	69_37n	1	known	missense	c.1444	p.D482Y	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	31	0	0	18	9	33.33	-	-	-	T	107492012	G	T	107492012	3	4	931	1	0	0	0	0	1	0	0	0	1347	1290	45	2	1474	2	BBX	3	107492012	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	6529281	107492012	90530418	27	75105										
EPHB1	0	genome.wustl.edu	37	chr3	134911476	134911476	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ccaggcaagagggaaatctaCgtggccatcaagaccctgaa	11	11	2	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	134911476	134911476	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.1941	p.Y647	0.041	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	84	0	0	82	28	25.45	-	-	-	T	134911476	C	T	134911476	2	4	931	1	0	0	0	0	0	0	0	1	5211	547	19	1		1	EPHB1	3	134911476	Silent	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	27419464	134911476	63110954	28	75106										
PPP2R3A	0	genome.wustl.edu	37	chr3	135720977	135720977	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ctgaagaagacttggttactCagattttggaaaaacataaa	8	5	1	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	135720977	135720977	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	1	known	nonsense	c.637	p.Q213*	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	45	0	0	52	7	11.86	-	-	-	T	135720977	C	T	135720977	4	4	931	1	0	0	0	0	0	1	0	0	12465	827	29	2	639	2	PPP2R3A	3	135720977	Nonsense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	809501	135720977	62301453	29	75107										
NLGN1	0	genome.wustl.edu	37	chr3	173998377	173998377	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cccagaaagaccaactttatCtccatattggattaaaacca	4	11	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	173998377	173998377	C	A	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	1	known	missense	c.1876	p.L626I	1.000	pfam_CarbesteraseB,prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	85	0	0	87	10	10.31	-	-	-	A	173998377	C	A	173998377	3	1	931	1	0	0	0	0	1	0	0	0	10533	913	32	2	1774	2	NLGN1	3	173998377	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	38277400	173998377	24024053	30	75108										
PIK3CA	0	genome.wustl.edu	37	chr3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tctctctgaaatcactgagcAggagaaagattttctatgga	9	7	4	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0	104	85	44.97	-	-	-	G	178936095	A	G	178936095	3	3	931	1	0	0	0	0	1	0	0	0	11987	188	7	5	1671	5	PIK3CA	3	178936095	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	4937718	178936095	19086335	31	75109										
PIK3CA	0	genome.wustl.edu	37	chr3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	atcttttctcaatgatgcttGgctctggaatgccagaacta	8	9	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	178951964	178951964	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3019	p.G1007R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	115	0	0	149	43	22.4	-	-	-	C	178951964	G	C	178951964	3	2	931	1	0	0	0	0	1	0	0	0	11987	1348	47	4	3097	4	PIK3CA	3	178951964	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	15869	178951964	19070466	32	75110										
PEX5L	0	genome.wustl.edu	37	chr3	179592153	179592153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ttccaattctgaagccgactCagagttgagggcgctttttc	10	10	2	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	179592153	179592153	C	T	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	0.998	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	124	1	0.8	200	51	20.32	-	-	-	T	179592153	C	T	179592153	3	4	931	1	0	0	0	0	1	0	0	0	11823	835	29	2	1228	2	PEX5L	3	179592153	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	640189	179592153	18430277	33	75111										
MUC4	0	genome.wustl.edu	37	chr3	195505713	195505713	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gatactgtggaagctgaggtAgcactgctgacagcaagagg	15	7	0	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	195505713	195505713	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.12738	p.A4246	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	237	0	0	246	106	30.11	-	-	-	G	195505713	A	G	195505713	2	3	931	1	0	0	0	0	0	0	0	1	10050	407	15	5		5	MUC4	3	195505713	Silent	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	15913560	195505713	2516717	34	75112										
LIMCH1	0	genome.wustl.edu	37	chr4	41615638	41615638	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tttggctctcgctctcggcaGacgccttcaccagatgtagt	10	13	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	41615638	41615638	G	C	SNP	LIMCH1	ENST00000503057	human	ensembl	69_37n	1	known	missense	c.165	p.Q55H	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042	61	0	0	48	7	12.73	-	-	-	C	41615638	G	C	41615638	3	2	931	1	0	0	0	0	1	0	0	0	8852	933	33	2	696	2	LIMCH1	4	41615638	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		41615638	149538638	35	75113										
CENPE	0	genome.wustl.edu	37	chr4	104066766	104066766	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ctctgaaagattcactcttaActcattaatagtttcctctt	3	10	5	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	104066766	104066766	A	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	silent	c.4486	p.L1496	0.007	superfamily_Signal_recog_particl_SRP54_hlx	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	218	0	0	92	57	38.26	-	-	-	G	104066766	A	G	104066766	2	3	931	1	0	0	0	0	0	0	0	1	3259	40	2	5		5	CENPE	4	104066766	Silent	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	62451128	104066766	87087510	36	75114										
TTC29	0	genome.wustl.edu	37	chr4	147830218	147830218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gccctggtcaggtaatggtaCaggtaatccagtttatcagg	12	8	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	147830218	147830218	C	T	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	silent	c.438	p.L146	0.998	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	99	0	0	64	39	37.86	-	-	-	T	147830218	C	T	147830218	2	4	931	1	0	0	0	0	0	0	0	1	16793	465	17	4		4	TTC29	4	147830218	Silent	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	43763452	147830218	43324058	37	75115										
FER	0	genome.wustl.edu	37	chr5	108521904	108521904	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgttgttcctcttccagggaGatacagttcagagagtgacg	12	8	2	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	108521904	108521904	G	A	SNP	FER	ENST00000281092	human	ensembl	69_37n	1	known	missense	c.2207	p.R736K	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	182	0	0	130	35	21.21	-	-	-	A	108521904	G	A	108521904	3	1	931	1	0	0	0	0	1	0	0	0	5859	942	33	2	2273	2	FER	5	108521904	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		108521904	72393356	38	75116										
FBN2	0	genome.wustl.edu	37	chr5	127681110	127681110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gcaaagccagccccgcggggGcacagcgtctcgtattcctt	12	15	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	127681110	127681110	G	A	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	silent	c.3156	p.C1052	1.000	pirsf_Fibrillin,superfamily_TB_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	43	0	0	35	9	20.45	-	-	-	A	127681110	G	A	127681110	2	1	931	1	0	0	0	0	0	0	0	1	5749	1195	42	4		4	FBN2	5	127681110	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	19159206	127681110	53234150	39	75117										
ARHGAP26	0	genome.wustl.edu	37	chr5	142283104	142283104	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ataaaattattttcatcctaGacaagaaatcgctttgaagg	6	6	1	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	142283104	142283104	G	T	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	splice_site	c.703-1	e8-1	1.000	-	-	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	34	0	0	16	7	30.43	-	-	-	T	142283104	G	T	142283104	5	4	931	1	0	0	0	0	0	0	1	0	877	956	33	2	732	2	ARHGAP26	5	142283104	Splice_Site	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	14601994	142283104	38632156	40	75118										
PHACTR1	0	genome.wustl.edu	37	chr6	13283809	13283809	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gacaaagtaagcagaggggaGtgctggagagtgggaggcag	20	4	0	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	13283809	13283809	G	A	SNP	PHACTR1	ENST00000379329	human	ensembl	69_37n	1	known	silent	c.357	p.E119	0.001	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	39	0	0	33	6	15.38	-	-	-	A	13283809	G	A	13283809	2	1	931	1	0	0	0	0	0	0	0	1	11883	1044	36	4		4	PHACTR1	6	13283809	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		13283809	157831258	41	75119										
TDRD6	0	genome.wustl.edu	37	chr6	46657345	46657345	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ccttctacgatgcgcaggtaGagtttgttaaaaatccttct	8	9	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	46657345	46657345	G	C	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	1	known	missense	c.1480	p.E494Q	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	52	0	0	76	10	11.63	-	-	-	C	46657345	G	C	46657345	3	2	931	1	0	0	0	0	1	0	0	0	15829	943	33	2	1482	2	TDRD6	6	46657345	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	33373536	46657345	124457722	42	75120										
DST	0	genome.wustl.edu	37	chr6	56468688	56468688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tttagaccctgaagtacattCcaaatggcttgggaaatcat	8	8	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	56468688	56468688	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.10639	p.E3547K	0.048	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	82	0	0	97	16	14.16	-	-	-	T	56468688	C	T	56468688	3	4	931	1	0	0	0	0	1	0	0	0	4818	870	30	2		2	DST	6	56468688	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	9811343	56468688	114646379	43	75121										
SIM1	0	genome.wustl.edu	37	chr6	100897298	100897298	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	caagacgcacttcatcctcaGgaagaaggagcgctcgatct	10	12	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	100897298	100897298	G	A	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	silent	c.484	p.L162	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	39	0	0	23	15	39.47	-	-	-	A	100897298	G	A	100897298	2	1	931	1	0	0	0	0	0	0	0	1	14412	991	35	4		4	SIM1	6	100897298	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	44428610	100897298	70217769	44	75122										
ASCC3	0	genome.wustl.edu	37	chr6	101109699	101109699	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tacctctgcatttaggttatCtgcaaggctttccagaaact	7	10	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	101109699	101109699	C	G	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.2686	p.D896H	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	123	0	0	179	21	10.5	-	-	-	G	101109699	C	G	101109699	3	3	931	1	0	0	0	0	1	0	0	0	1037	913	32	2	4030	2	ASCC3	6	101109699	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	212401	101109699	70005368	45	75123										
RNF217	0	genome.wustl.edu	37	chr6	125379112	125379112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agtgccctacctgccaattcGtctggtgttttaagtgccac	9	12	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	125379112	125379112	G	T	SNP	RNF217	ENST00000560949	human	ensembl	69_37n	1	known	missense	c.436	p.V146F	0.835	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373	156	0	0	109	81	42.63	-	-	-	T	125379112	G	T	125379112	3	4	931	1	0	0	0	0	1	0	0	0	13567	1145	40	3	275	3	RNF217	6	125379112	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	24269413	125379112	45735955	46	75124										
CARD11	0	genome.wustl.edu	37	chr7	2954887	2954887	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gtaccttcctgcttctcagtCaagagcttggtggcgtccag	11	12	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	2954887	2954887	C	G	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.2823	p.L941F	0.170	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	83	0	0	67	8	10.67	-	-	-	G	2954887	C	G	2954887	3	3	931	1	0	0	0	0	1	0	0	0	2670	825	29	2	661	2	CARD11	7	2954887	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09		2954887	156183776	47	75125										
MACC1	0	genome.wustl.edu	37	chr7	20199064	20199064	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agctgtgtaaacacaccattTctgtcatgacttggctgaaa	8	9	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	20199064	20199064	T	G	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	missense	c.920	p.E307A	0.740	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	65	0	0	34	6	15	-	-	-	G	20199064	T	G	20199064	3	3	931	1	0	0	0	0	1	0	0	0	9210	1783	62	5	1650	5	MACC1	7	20199064	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09	17244177	20199064	138939599	48	75126										
COL1A2	0	genome.wustl.edu	37	chr7	94053655	94053655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tttctctatttagggacctcCtggcactccaggtcctcagg	9	13	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	94053655	94053655	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	1	known	missense	c.2573	p.P858L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	156	0	0	174	23	11.68	-	-	-	T	94053655	C	T	94053655	3	4	931	1	0	0	0	0	1	0	0	0	3708	681	24	4	2735	4	COL1A2	7	94053655	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	73854591	94053655	65085008	49	75127										
C7orf61	0	genome.wustl.edu	37	chr7	100061589	100061589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tggtctcagaaactcacccaGgaaataatcctttgccaagc	7	12	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	100061589	100061589	G	A	SNP	C7orf61	ENST00000332375	human	ensembl	69_37n	-1	known	silent	c.60	p.S20	0.269	NULL	NULL	-	no_errors	C7orf61	HGNC	ENSG00000185955	78	0	0	79	10	11.24	-	-	-	A	100061589	G	A	100061589	2	1	931	1	0	0	0	0	0	0	0	1	2431	987	35	4		4	C7orf61	7	100061589	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	6007934	100061589	59077074	50	75128										
SRPK2	0	genome.wustl.edu	37	chr7	104808475	104808475	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	acatttgagcaattttatttCatccaaggctgtctccgtat	6	9	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	104808475	104808475	C	T	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	missense	c.406	p.E136K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	99	0	0	74	19	20.21	-	-	-	T	104808475	C	T	104808475	3	4	931	1	0	0	0	0	1	0	0	0	15251	835	29	2	1741	2	SRPK2	7	104808475	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	4746886	104808475	54330188	51	75129										
MTSS1	0	genome.wustl.edu	37	chr8	125577935	125577935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gactttctggacatggtggtGctgggggaagagggtggcgt	20	5	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	8	125577935	125577935	G	A	SNP	MTSS1	ENST00000519168	human	ensembl	69_37n	-1	novel	missense	c.34	p.H12Y	1.000	NULL	pfscan_WH2_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTSS1	HGNC	ENSG00000170873	78	0	0	79	17	17.71	-	-	-	A	125577935	G	A	125577935	3	1	931	1	0	0	0	0	1	0	0	0	10034	1310	46	4	1499	4	MTSS1	8	125577935	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		125577935	20786087	52	75130										
TG	0	genome.wustl.edu	37	chr8	134030036	134030036	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ccaacaggaatctctctgctCagctatgaggcatctgtacc	8	13	4	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	8	134030036	134030036	C	A	SNP	TG	ENST00000519178	human	ensembl	69_37n	1	novel	missense	c.1942	p.Q648K	0.000	NULL	pfam_CarbesteraseB,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TG	HGNC	ENSG00000042832	55	0	0	60	12	16.67	-	-	-	A	134030036	C	A	134030036	3	1	931	1	0	0	0	0	1	0	0	0	15908	813	29	2	6726	2	TG	8	134030036	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	8452101	134030036	12333986	53	75131										
TYRP1	0	genome.wustl.edu	37	chr9	12704689	12704689	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gcagtctttgatgaatggctGaggagatacaatgctggtaa	13	5	1	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	12704689	12704689	G	A	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	1	known	silent	c.1245	p.L415	0.992	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	30	0	0	62	10	13.89	-	-	-	A	12704689	G	A	12704689	2	1	931	1	0	0	0	0	0	0	0	1	16913	1277	45	2		2	TYRP1	9	12704689	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		12704689	128508742	54	75132										
IFNA5	0	genome.wustl.edu	37	chr9	21304986	21304986	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gatgagtcctttgtgctgaaGagattgaaggtctgctggat	14	5	1	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	21304986	21304986	G	C	SNP	IFNA5	ENST00000259555	human	ensembl	69_37n	-1	known	silent	c.270	p.L90	0.631	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA5	HGNC	ENSG00000147873	197	0	0	132	19	12.5	-	-	-	C	21304986	G	C	21304986	2	2	931	1	0	0	0	0	0	0	0	1	7594	929	33	2		2	IFNA5	9	21304986	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	8600297	21304986	119908445	55	75133										
TRPM6	0	genome.wustl.edu	37	chr9	77403596	77403596	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agccactcctgcacgctgggCtggggctgcatctccaccaa	11	16	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	77403596	77403596	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.2601	p.Q867H	0.059	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	78	0	0	57	24	29.63	-	-	-	A	77403596	C	A	77403596	3	1	931	1	0	0	0	0	1	0	0	0	16686	796	28	4	3547	4	TRPM6	9	77403596	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	56098610	77403596	63809835	56	75134										
TRPM6	0	genome.wustl.edu	37	chr9	77415343	77415343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	caacagcgtcatggccatgcGctcattctgcttgaatgcct	9	13	3	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	77415343	77415343	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.2065	p.R689C	0.978	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	47	0	0	57	35	38.04	-	-	-	A	77415343	G	A	77415343	3	1	931	1	0	0	0	0	1	0	0	0	16686	1087	38	1	4095	1	TRPM6	9	77415343	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	11747	77415343	63798088	57	75135										
PRUNE2	0	genome.wustl.edu	37	chr9	79322731	79322731	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gtccccaaaatcaagacttcGgggaactctgtgaggtggcc	12	11	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	79322731	79322731	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	nonsense	c.3382	p.R1128*	0.629	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	43	0	0	29	10	25	-	-	-	A	79322731	G	A	79322731	4	1	931	1	0	0	0	0	0	1	0	0	12721	1124	39	1	4855	1	PRUNE2	9	79322731	Nonsense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	1907388	79322731	61890700	58	75136										
JMJD1C	0	genome.wustl.edu	37	chr10	64967194	64967194	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aggaaattacttctgaaccaCcccagctggaaacactggta	8	11	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	10	64967194	64967194	C	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.4235	p.G1412V	0.761	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	64	0	0	57	28	32.94	-	-	-	A	64967194	C	A	64967194	3	1	931	1	0	0	0	0	1	0	0	0	8004	507	18	4	3455	4	JMJD1C	10	64967194	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09		64967194	70567553	59	75137										
MRVI1	0	genome.wustl.edu	37	chr11	10626073	10626073	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgtcatttctaaaggccaagGacagttgcacaaacacgttc	8	10	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	10626073	10626073	G	C	SNP	MRVI1	ENST00000421747	human	ensembl	69_37n	-1	known	missense	c.1595	p.S532C	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952	234	0	0	242	54	18.24	-	-	-	C	10626073	G	C	10626073	3	2	931	1	0	0	0	0	1	0	0	0	9925	1174	41	2	1152	2	MRVI1	11	10626073	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		10626073	124380443	60	75138										
TPH1	0	genome.wustl.edu	37	chr11	18042690	18042690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	atacttcactccaaatggacGcttaattgttttggtaaatt	6	7	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	18042690	18042690	G	A	SNP	TPH1	ENST00000341556	human	ensembl	69_37n	-1	known	missense	c.1183	p.R395C	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167	147	0	0	132	25	15.92	-	-	-	A	18042690	G	A	18042690	3	1	931	1	0	0	0	0	1	0	0	0	16497	1087	38	1	155	1	TPH1	11	18042690	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	7416617	18042690	116963826	61	75139										
OR4D11	0	genome.wustl.edu	37	chr11	59271565	59271565	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tccctttctgtggacccaatGttcttgacactttctactgc	6	13	3	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	59271565	59271565	G	T	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	1	known	missense	c.517	p.V173F	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	244	2	0.81	205	34	14.23	-	-	-	T	59271565	G	T	59271565	3	4	931	1	0	0	0	0	1	0	0	0	11128	1377	48	4	519	4	OR4D11	11	59271565	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	41228875	59271565	75734951	62	75140										
FADS2	0	genome.wustl.edu	37	chr11	61630536	61630536	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gccctccttttcctcaacttCatcaggtgcctgggctttgc	8	15	3	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	61630536	61630536	C	A	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	1	known	missense	c.975	p.F325L	0.998	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	168	0	0	153	18	10.53	-	-	-	A	61630536	C	A	61630536	3	1	931	1	0	0	0	0	1	0	0	0	5406	825	29	2	1005	2	FADS2	11	61630536	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	2358971	61630536	73375980	63	75141										
METTL12	0	genome.wustl.edu	37	chr11	62433975	62433975	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	actggttctttggatacgacGaagtccaggggctcctactg	12	10	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	62433975	62433975	G	T	SNP	METTL12	ENST00000532971	human	ensembl	69_37n	1	known	nonsense	c.175	p.E59*	0.609	NULL	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756	33	0	0	54	7	11.48	-	-	-	T	62433975	G	T	62433975	4	4	931	1	0	0	0	0	0	1	0	0	9567	1059	37	3	181	3	METTL12	11	62433975	Nonsense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	803439	62433975	72572541	64	75142										
FMNL3	0	genome.wustl.edu	37	chr12	50044490	50044490	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cctgcagatctcctcagccgAgcggccagccttgcgtaggg	13	15	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	50044490	50044490	A	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1969	p.S657A	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	152	1	0.65	167	34	16.92	-	-	-	C	50044490	A	C	50044490	3	2	931	1	0	0	0	0	1	0	0	0	5999	304	11	5	1154	5	FMNL3	12	50044490	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09		50044490	83807405	65	75143										
ATF1	0	genome.wustl.edu	37	chr12	51208091	51208091	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ggagatatgcaaacatatcaGatccgaactacaccttcagc	7	11	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	51208091	51208091	G	C	SNP	ATF1	ENST00000262053	human	ensembl	69_37n	1	known	missense	c.540	p.Q180H	1.000	prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268	94	0	0	83	11	11.7	-	-	-	C	51208091	G	C	51208091	3	2	931	1	0	0	0	0	1	0	0	0	1083	933	33	2	558	2	ATF1	12	51208091	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	1163601	51208091	82643804	66	75144										
HOXC4	0	genome.wustl.edu	37	chr12	54448714	54448714	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aagtcctggaattagagaaaGagtttcattacaaccgctac	8	8	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	54448714	54448714	G	C	SNP	HOXC4	ENST00000303406	human	ensembl	69_37n	1	known	missense	c.520	p.E174Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	HGNC	ENSG00000198353	30	0	0	29	6	17.14	-	-	-	C	54448714	G	C	54448714	3	2	931	1	0	0	0	0	1	0	0	0	7364	943	33	2	526	2	HOXC4	12	54448714	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	3240623	54448714	79403181	67	75145										
CYP27B1	0	genome.wustl.edu	37	chr12	58157933	58157933	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgtctttgtctgggacacgaGaatttccaggtaccacaggg	12	9	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	58157933	58157933	G	A	SNP	CYP27B1	ENST00000228606	human	ensembl	69_37n	-1	known	missense	c.1163	p.S388F	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012	58	0	0	47	8	14.55	-	-	-	A	58157933	G	A	58157933	3	1	931	1	0	0	0	0	1	0	0	0	4190	942	33	2	375	2	CYP27B1	12	58157933	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	3709219	58157933	75693962	68	75146										
PTPRB	0	genome.wustl.edu	37	chr12	70938401	70938401	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	agtggctttgtgaattccttCaggtcctcatcaaagagctg	10	9	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	70938401	70938401	C	G	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.5430	p.L1810	0.998	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	131	0	0	145	24	14.2	-	-	-	G	70938401	C	G	70938401	2	3	931	1	0	0	0	0	0	0	0	1	12879	813	29	2		2	PTPRB	12	70938401	Silent	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	12780468	70938401	62913494	69	75147										
TESC	0	genome.wustl.edu	37	chr12	117486929	117486929	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gaagtcctcgaaattgatctCatcagccaggccactgggtc	10	12	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	117486929	117486929	C	G	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	missense	c.403	p.E135Q	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	88	0	0	84	18	17.65	-	-	-	G	117486929	C	G	117486929	3	3	931	1	0	0	0	0	1	0	0	0	15861	835	29	2	420	2	TESC	12	117486929	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	46548528	117486929	16364966	70	75148										
TMED2	0	genome.wustl.edu	37	chr12	124069325	124069325	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ccaagatgggcctcatcttcGaggtggcggagggcggcttc	16	11	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	124069325	124069325	G	C	SNP	TMED2	ENST00000262225	human	ensembl	69_37n	1	known	missense	c.142	p.E48Q	1.000	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598	49	0	0	43	9	17.31	-	-	-	C	124069325	G	C	124069325	3	2	931	1	0	0	0	0	1	0	0	0	16099	1059	37	3	144	3	TMED2	12	124069325	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	6582396	124069325	9782570	71	75149										
SACS	0	genome.wustl.edu	37	chr13	23909580	23909580	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gccacgtagtaagatttcctTcagagtcctcagtatccata	7	11	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	23909580	23909580	T	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8435	p.E2812A	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	105	0	0	111	19	14.62	-	-	-	G	23909580	T	G	23909580	3	3	931	1	0	0	0	0	1	0	0	0	13890	1783	62	5	5308	5	SACS	13	23909580	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09		23909580	91260298	72	75150										
KATNAL1	0	genome.wustl.edu	37	chr13	30782679	30782679	+	Nonstop_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	taaagagctgacagaaattcAagcagatccaaattcaacca	6	9	2	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	30782679	30782679	A	C	SNP	KATNAL1	ENST00000380615	human	ensembl	69_37n	-1	known	nonstop	c.1471	p.*491G	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	58	0	0	44	10	18.52	-	-	-	C	30782679	A	C	30782679	4	2	931	1	0	0	0	0	0	0	0	0	8039	143	5	5	5	5	KATNAL1	13	30782679	Nonstop_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09	6873099	30782679	84387199	73	75151										
CLDN10	0	genome.wustl.edu	37	chr13	96086130	96086130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ctctggtgtctggtgtcggaGggtttggagctctcgttgct	16	8	3	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	96086130	96086130	G	A	SNP	CLDN10	ENST00000376873	human	ensembl	69_37n	1	known	missense	c.43	p.G15R	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin10	-	no_errors	CLDN10	HGNC	ENSG00000134873	122	0	0	71	26	26.8	-	-	-	A	96086130	G	A	96086130	3	1	931	1	0	0	0	0	1	0	0	0	3502	1000	35	4	45	4	CLDN10	13	96086130	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	65303451	96086130	19083748	74	75152										
C14orf159	0	genome.wustl.edu	37	chr14	91671099	91671099	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	atgggtaaagtcaaggaggcTgtgaggaggcacatacggca	16	6	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	14	91671099	91671099	T	C	SNP	C14orf159	ENST00000523461	human	ensembl	69_37n	1	known	missense	c.1448	p.L483P	0.731	pirsf_UPF0317_mt	pfam_DUF1445,pirsf_UPF0317_mt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C14orf159	HGNC	ENSG00000133943	147	0	0	134	17	11.26	-	-	-	C	91671099	T	C	91671099	3	2	931	1	0	0	0	0	1	0	0	0	1767	1567	55	5	1532	5	C14orf159	14	91671099	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09		91671099	15678441	75	75153										
KIAA0284	0	genome.wustl.edu	37	chr14	105359435	105359435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgcctccctcagcaacatgcCcagcacccccgcctcgacca	6	23	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	14	105359435	105359435	C	T	SNP	KIAA0284	ENST00000453495	human	ensembl	69_37n	1	known	missense	c.4109	p.P1370L	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	KIAA0284	HGNC	ENSG00000099814	18	0	0	17	6	26.09	-	-	-	T	105359435	C	T	105359435	3	4	931	1	0	0	0	0	1	0	0	0	8218	623	22	4	4051	4	KIAA0284	14	105359435	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	13688336	105359435	1990105	76	75154										
DUOX2	0	genome.wustl.edu	37	chr15	45392998	45392998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cagggcctcccagctctgggGcttctggggcagggggcccc	17	15	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	15	45392998	45392998	G	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.2960	p.A987D	0.012	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	119	0	0	73	27	27	-	-	-	T	45392998	G	T	45392998	3	4	931	1	0	0	0	0	1	0	0	0	4836	1203	42	4	1734	4	DUOX2	15	45392998	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		45392998	57138394	77	75155										
TELO2	0	genome.wustl.edu	37	chr16	1555502	1555502	+	Frame_Shift_Del	DEL	T	T	-													0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aagtcccaacaccccgtgccTgccagaggcagccgtctctc							TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	1555502	1555502	T	-	DEL	TELO2	ENST00000262319	human	ensembl	69_37n	1	known	frame_shift_del	c.1934	p.L645fs	0.000	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	49	0	0	33	8	19.05	-	-	-	-	1555502	T	-	1555502	7	5	931	1	0	1	0	1	0	0	0	0	15852	1580	55	0	1992	0	TELO2	16	1555502	Frame_Shift_Del	DEL	T	TCGA-GM-A2DH-01A-11D-A17W-09		1555502	88799251	78	75156										
SMG1	0	genome.wustl.edu	37	chr16	18887618	18887618	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ggaggttgtttagggcacaaGtcatttctcccaatattaac	9	8	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	18887618	18887618	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.1718	p.T573S	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	94	0	0	77	23	23	-	-	-	C	18887618	G	C	18887618	3	2	931	1	0	0	0	0	1	0	0	0	14884	1029	36	4	9471	4	SMG1	16	18887618	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	17332116	18887618	71467135	79	75157										
PDILT	0	genome.wustl.edu	37	chr16	20370693	20370693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tttgcactggaggtccctttGgcttagccaccaccaccacc	8	16	0	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	20370693	20370693	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1703	p.P568L	0.241	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	113	0	0	91	16	14.95	-	-	-	A	20370693	G	A	20370693	3	1	931	1	0	0	0	0	1	0	0	0	11747	1348	47	4	55	4	PDILT	16	20370693	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	1483075	20370693	69984060	80	75158										
PALB2	0	genome.wustl.edu	37	chr16	23634375	23634375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tagcctcctctttgtcaggcCaagcacagcttttatatttc	6	12	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	23634375	23634375	C	G	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.2911	p.G971R	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	146	0	0	136	19	12.18	-	-	-	G	23634375	C	G	23634375	3	3	931	1	0	0	0	0	1	0	0	0	11479	594	21	4	669	4	PALB2	16	23634375	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	3263682	23634375	66720378	81	75159										
TRIM72	0	genome.wustl.edu	37	chr16	31235541	31235541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgacccgagctctgcgcaccCgagcctggtggtgtcttcct	12	15	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	31235541	31235541	C	A	SNP	TRIM72	ENST00000322122	human	ensembl	69_37n	1	known	missense	c.899	p.P300Q	0.867	superfamily_ConA-like_lec_gl,smart_PRY,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM72	HGNC	ENSG00000177238	21	0	0	19	5	20.83	-	-	-	A	31235541	C	A	31235541	3	1	931	1	0	0	0	0	1	0	0	0	16641	652	23	3	921	3	TRIM72	16	31235541	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	7601166	31235541	59119212	82	75160										
LPCAT2	0	genome.wustl.edu	37	chr16	55579724	55579724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aataaagtccggaatttaatGgcagagtaagtgtctatatt	9	4	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	55579724	55579724	G	T	SNP	LPCAT2	ENST00000262134	human	ensembl	69_37n	1	known	missense	c.930	p.M310I	1.000	NULL	pfam_EF-hand,pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	LPCAT2	HGNC	ENSG00000087253	108	0	0	64	35	35.35	-	-	-	T	55579724	G	T	55579724	3	4	931	1	0	0	0	0	1	0	0	0	8977	1348	47	4	964	4	LPCAT2	16	55579724	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	24344183	55579724	34775029	83	75161										
TAT	0	genome.wustl.edu	37	chr16	71604626	71604626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gtcatgaatgaggatccagcCcaacctccagccaggaacca	9	14	1	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	71604626	71604626	C	G	SNP	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	missense	c.868	p.G290R	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	119	0	0	104	28	21.21	-	-	-	G	71604626	C	G	71604626	3	3	931	1	0	0	0	0	1	0	0	0	15682	623	22	4	516	4	TAT	16	71604626	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	16024902	71604626	18750127	84	75162										
ADAMTS18	0	genome.wustl.edu	37	chr16	77398163	77398163	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	attttcttgtctgccaccacGagggtttccacattgaggcc	9	12	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	77398163	77398163	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.894	p.L298	0.011	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	179	0	0	168	21	11.11	-	-	-	A	77398163	G	A	77398163	2	1	931	1	0	0	0	0	0	0	0	1	263	1045	37	1		1	ADAMTS18	16	77398163	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	5793537	77398163	12956590	85	75163										
P2RX5	0	genome.wustl.edu	37	chr17	3593433	3593433	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tgaagtcttcggcctccttcAggaatggctccctgaaaacc	9	13	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	3593433	3593433	A	T	SNP	P2RX5	ENST00000435558	human	ensembl	69_37n	-1	known	missense	c.545	p.L182Q	0.997	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454	124	0	0	83	12	12.63	-	-	-	T	3593433	A	T	3593433	3	4	931	1	0	0	0	0	1	0	0	0	11416	188	7	5	751	5	P2RX5	17	3593433	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09		3593433	77601777	86	75164										
TP53	0	genome.wustl.edu	37	chr17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ggtcccaagacttagtacctGaagggtgaaatattctccat	9	9	1	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	7576855	7576855	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	0.999	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	105	0	0	77	40	34.19	-	-	-	A	7576855	G	A	7576855	4	1	931	1	0	0	0	0	0	1	0	0	16477	1299	45	2	291	2	TP53	17	7576855	Nonsense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	3983422	7576855	73618355	87	75165										
ABCA9	0	genome.wustl.edu	37	chr17	66987049	66987049	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ctggatatcttcctcctctcCttcaggctcttctgggtttg	8	13	5	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	66987049	66987049	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.3766	p.G1256R	0.989	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	219	0	0	188	70	27.13	-	-	-	T	66987049	C	T	66987049	3	4	931	1	0	0	0	0	1	0	0	0	39	690	24	4	1152	4	ABCA9	17	66987049	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	59410194	66987049	14208161	88	75166										
ZNF407	0	genome.wustl.edu	37	chr18	72775342	72775342	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	tggaggagacggccgccgccAcgctgcagacgctggccatg	16	14	0	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	18	72775342	72775342	A	T	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	1	known	missense	c.5665	p.T1889S	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	23	0	0	28	10	25.64	-	-	-	T	72775342	A	T	72775342	3	4	931	1	0	0	0	0	1	0	0	0	17983	159	6	5	5825	5	ZNF407	18	72775342	Missense_Mutation	SNP	A	TCGA-GM-A2DH-01A-11D-A17W-09		72775342	5301906	89	75167										
MUC16	0	genome.wustl.edu	37	chr19	9075811	9075811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	catctcagtgatccaaggtgCacttggggttgatttttctt	10	8	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	9075811	9075811	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.11635	p.A3879P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	156	0	0	170	40	19.05	-	-	-	G	9075811	C	G	9075811	3	3	931	1	0	0	0	0	1	0	0	0	10045	710	25	4	32216	4	MUC16	19	9075811	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09		9075811	50053172	90	75168										
OR7C2	0	genome.wustl.edu	37	chr19	15052876	15052876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aagctggcctgttctgacacCttcatcaataacatcgtgat	7	11	3	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	15052876	15052876	C	T	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	1	known	silent	c.576	p.T192	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	349	1	0.29	244	54	18.12	-	-	-	T	15052876	C	T	15052876	2	4	931	1	0	0	0	0	0	0	0	1	11291	668	24	4		4	OR7C2	19	15052876	Silent	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	5977065	15052876	44076107	91	75169										
COPE	0	genome.wustl.edu	37	chr19	19010527	19010528	+	Frame_Shift_Ins	INS	-	-	T													0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gtagcaccagcctgtcaaagINStcgttctcctttagcaagac							TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	19010527	19010528	-	T	INS	COPE	ENST00000262812	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.D296fs	0.999:1.000	pfam_Coatomer_esu,pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	76	0	0	54	23	29.87	-	-	-	T	19010528	-	T	19010527	7	5	931	1	0	1	1	0	0	0	0	0	3760	1020	36	0	42	0	COPE	19	19010527	Frame_Shift_Ins	INS	-	TCGA-GM-A2DH-01A-11D-A17W-09	3957651	19010527	40118456	92	75170										
ZFP30	0	genome.wustl.edu	37	chr19	38126353	38126353	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gttagatgatagccacgactGaaagtcttcccacattcctt	7	11	1	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	38126353	38126353	G	T	SNP	ZFP30	ENST00000351218	human	ensembl	69_37n	-1	known	missense	c.1089	p.F363L	0.955	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	80	0	0	38	5	11.63	-	-	-	T	38126353	G	T	38126353	3	4	931	1	0	0	0	0	1	0	0	0	17740	1281	45	2	474	2	ZFP30	19	38126353	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	19115826	38126353	21002630	93	75171										
ITPKC	0	genome.wustl.edu	37	chr19	41245449	41245449	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	catgatctgcctcctgcaggGgctggcacagagctgagctg	14	12	1	3			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	41245449	41245449	G	C	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	1	known	missense	c.2036	p.G679A	0.906	NULL	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	27	0	0	19	9	32.14	-	-	-	C	41245449	G	C	41245449	3	2	931	1	0	0	0	0	1	0	0	0	7973	1232	43	4	2062	4	ITPKC	19	41245449	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	3119096	41245449	17883534	94	75172										
PEG3	0	genome.wustl.edu	37	chr19	57328017	57328017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	cgcgctcacgttcacgttcaCgttcatgttcacgctcatta	7	14	6	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	57328017	57328017	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1793	p.R598H	0.011	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	97	0	0	81	13	13.83	-	-	-	T	57328017	C	T	57328017	3	4	931	1	0	0	0	0	1	0	0	0	11793	536	19	1	2977	1	PEG3	19	57328017	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	16082568	57328017	1800966	95	75173										
ZIK1	0	genome.wustl.edu	37	chr19	58101385	58101385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ttctctgctttcaggttgtgGccatggaacagaggatgaag	13	7	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	58101385	58101385	G	A	SNP	ZIK1	ENST00000307468	human	ensembl	69_37n	1	known	missense	c.206	p.G69D	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649	55	0	0	69	11	13.75	-	-	-	A	58101385	G	A	58101385	3	1	931	1	0	0	0	0	1	0	0	0	17779	1203	42	4	220	4	ZIK1	19	58101385	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	773368	58101385	1027598	96	75174										
ABCG1	0	genome.wustl.edu	37	chr21	43714747	43714747	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	atccccacgtacctacagtgGatgtcctacatctcctatgt	6	14	1	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	21	43714747	43714747	G	C	SNP	ABCG1	ENST00000398437	human	ensembl	69_37n	1	known	missense	c.2223	p.W741C	1.000	pfam_ABC_2_trans,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	131	0	0	138	20	12.66	-	-	-	C	43714747	G	C	43714747	3	2	931	1	0	0	0	0	1	0	0	0	68	1183	41	2	2007	2	ABCG1	21	43714747	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09		43714747	4415148	97	75175										
MSL3	0	genome.wustl.edu	37	chrX	11779630	11779630	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ttcacctagcattaagcagtTcctctgactgtagtgaaaac	7	10	2	2			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	11779630	11779630	T	C	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	1	known	missense	c.394	p.S132P	0.998	superfamily_Chromodomain-like	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	141	0	0	72	17	19.1	-	-	-	C	11779630	T	C	11779630	3	2	931	1	0	0	0	0	1	0	0	0	9951	1783	62	5	412	5	MSL3	23	11779630	Missense_Mutation	SNP	T	TCGA-GM-A2DH-01A-11D-A17W-09		11779630	143490930	98	75176										
TCEANC	0	genome.wustl.edu	37	chrX	13680946	13680946	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aagaaaattcaggaccttctCatgacccaagtcagaatgag	8	9	3	4			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	13680946	13680946	C	G	SNP	TCEANC	ENST00000314720	human	ensembl	69_37n	1	known	missense	c.409	p.H137D	0.002	pirsf_TF_IIS-rel	pfam_TFIIS_cen_dom,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFS2M,pirsf_TF_IIS-rel	-	no_errors	TCEANC	HGNC	ENSG00000176896	35	0	0	12	6	33.33	-	-	-	G	13680946	C	G	13680946	3	3	931	1	0	0	0	0	1	0	0	0	15773	826	29	2	415	2	TCEANC	23	13680946	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	1901316	13680946	141589614	99	75177										
PCDH19	0	genome.wustl.edu	37	chrX	99663461	99663461	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gcgaagcccgcctctcgcgcGtctttggccacgttggcaat	12	15	2	0			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	99663461	99663461	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	silent	c.135	p.D45	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	19	0	0	9	8	47.06	-	-	-	A	99663461	G	A	99663461	2	1	931	1	0	0	0	0	0	0	0	1	11587	1136	40	1		1	PCDH19	23	99663461	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	85982515	99663461	55607099	100	75178										
TRPC5	0	genome.wustl.edu	37	chrX	111025166	111025166	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	aaaattaaaagtcttactgtGaaacttctcaagttgcgcct	6	8	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	111025166	111025166	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.2097	p.F699	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	75	0	0	48	10	17.24	-	-	-	A	111025166	G	A	111025166	2	1	931	1	0	0	0	0	0	0	0	1	16678	1281	45	2		2	TRPC5	23	111025166	Silent	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	11361705	111025166	44245394	101	75179										
RNF113A	0	genome.wustl.edu	37	chrX	119005194	119005194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	caaagatggcttgtgcatcgCgctctttctctgtgtccagc	10	12	2	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	119005194	119005194	C	T	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.383	p.R128H	0.901	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	124	0	0	96	15	13.39	-	-	-	T	119005194	C	T	119005194	3	4	931	1	0	0	0	0	1	0	0	0	13513	768	27	1	652	1	RNF113A	23	119005194	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	7980028	119005194	36265366	102	75180										
GRIA3	0	genome.wustl.edu	37	chrX	122528859	122528859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	ggaaagagtcatgcatggggGagccaacattacaggtttcc	13	8	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	122528859	122528859	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	1	known	missense	c.791	p.G264E	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	98	0	0	97	17	14.91	-	-	-	A	122528859	G	A	122528859	3	1	931	1	0	0	0	0	1	0	0	0	6820	1174	41	2	813	2	GRIA3	23	122528859	Missense_Mutation	SNP	G	TCGA-GM-A2DH-01A-11D-A17W-09	3523665	122528859	32741701	103	75181										
FAM122B	0	genome.wustl.edu	37	chrX	133906240	133906240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.240384615384615	25	0.000187679870408178	2.35953282828283	3.22198275862069	1.68355855855856	0.300431196256591	0.930327025915261	14	gcatgctactggagactctgCggtagcgctgcctttagcca	12	12	1	1			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	133906240	133906240	C	T	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	missense	c.730	p.A244T	0.986	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	65	0	0	108	16	12.9	-	-	-	T	133906240	C	T	133906240	3	4	931	1	0	0	0	0	1	0	0	0	5460	768	27	1	148	1	FAM122B	23	133906240	Missense_Mutation	SNP	C	TCGA-GM-A2DH-01A-11D-A17W-09	11377381	133906240	21364320	104	75182										
NUP210L	0	genome.wustl.edu	37	chr1	154062065	154062065	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tgatttccaattcggaatgtGagaacctttaaggaagtcac	9	7	1	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	1	154062065	154062065	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	silent	c.2193	p.L731	0.997	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	29	0	0	37	8	17.78	-	-	-	A	154062065	G	A	154062065	2	1	932	1	0	0	0	0	0	0	0	1	10834	1277	45	2		2	NUP210L	1	154062065	Silent	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09		154062065	95188556	1	75183										
USH2A	0	genome.wustl.edu	37	chr1	215933077	215933077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ggaaaagcaagtttccattaCgactcaattgatattgagaa	8	6	1	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	1	215933077	215933077	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11156	p.R3719H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	61	0	0	61	8	11.59	-	-	-	T	215933077	C	T	215933077	3	4	932	1	0	0	0	0	1	0	0	0	17133	536	19	1	4516	1	USH2A	1	215933077	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	61871012	215933077	33317544	2	75184										
LRP1B	0	genome.wustl.edu	37	chr2	141356269	141356269	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ccatctgagaaatacagcttCtctgcacggtagtcgatagt	9	10	2	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	2	141356269	141356269	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.7125	p.E2375	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	89	0	0	77	13	14.44	-	-	-	T	141356269	C	T	141356269	2	4	932	1	0	0	0	0	0	0	0	1	9021	912	32	2		2	LRP1B	2	141356269	Silent	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		141356269	101843104	3	75185										
ATG16L1	0	genome.wustl.edu	37	chr2	234198929	234198929	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ttgcaggatccagttgcaatGatattgtctgcacagagcaa	10	8	1	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	2	234198929	234198929	G	A	SNP	ATG16L1	ENST00000392017	human	ensembl	69_37n	1	known	missense	c.1360	p.D454N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ATG16L1	HGNC	ENSG00000085978	54	0	0	84	15	15.15	-	-	-	A	234198929	G	A	234198929	3	1	932	1	0	0	0	0	1	0	0	0	1095	1290	45	2	1414	2	ATG16L1	2	234198929	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	92842660	234198929	9000444	4	75186										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0	37	5	11.9	-	-	-	A	178936082	G	A	178936082	3	1	932	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09		178936082	19086348	5	75187										
HTT	0	genome.wustl.edu	37	chr4	3176466	3176466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	agatggtttgatgtcctccaGaaagtgtctacccagttgaa	10	8	1	4			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	4	3176466	3176466	G	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.4185	p.Q1395H	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	80	0	0	66	10	13.16	-	-	-	C	3176466	G	C	3176466	3	2	932	1	0	0	0	0	1	0	0	0	7511	933	33	2	4311	2	HTT	4	3176466	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09		3176466	187977810	6	75188										
ANKRD17	0	genome.wustl.edu	37	chr4	73941980	73941980	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	gttcatatgcacactgttcaTgtgaggtgcccagggtccag	12	10	2	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	4	73941980	73941980	T	A	SNP	ANKRD17	ENST00000358602	human	ensembl	69_37n	-1	known	missense	c.7780	p.M2594L	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	49	0	0	40	5	11.11	-	-	-	A	73941980	T	A	73941980	3	1	932	1	0	0	0	0	1	0	0	0	646	1464	51	5	35	5	ANKRD17	4	73941980	Missense_Mutation	SNP	T	TCGA-GM-A2DI-01A-31D-A18P-09	70765514	73941980	117212296	7	75189										
TRIM60	0	genome.wustl.edu	37	chr4	165962158	165962158	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	atcctcaacttcttgtctctGaggatagaaaagctgtgcga	9	9	3	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	4	165962158	165962158	G	C	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	1	known	missense	c.934	p.E312Q	0.993	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	37	0	0	27	4	12.9	-	-	-	C	165962158	G	C	165962158	3	2	932	1	0	0	0	0	1	0	0	0	16631	1291	45	2	936	2	TRIM60	4	165962158	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	92020178	165962158	25192118	8	75190										
APC	0	genome.wustl.edu	37	chr5	112177102	112177102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tccacttttccccagtcatcCaaagacataccagacagagg	6	14	1	3			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	5	112177102	112177102	C	T	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	silent	c.5811	p.S1937	0.998	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	57	0	0	51	13	20.31	-	-	-	T	112177102	C	T	112177102	2	4	932	1	0	0	0	0	0	0	0	1	764	581	21	4		4	APC	5	112177102	Silent	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		112177102	68738158	9	75191										
DPYSL3	0	genome.wustl.edu	37	chr5	146804484	146804484	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	atcagcataaaaggactgatCatcattgacgattctgcctc	7	10	4	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	5	146804484	146804484	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	69_37n	-1	known	missense	c.82	p.D28N	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657	35	0	0	43	5	10.42	-	-	-	T	146804484	C	T	146804484	3	4	932	1	0	0	0	0	1	0	0	0	4783	826	29	2	1682	2	DPYSL3	5	146804484	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	34627382	146804484	34110776	10	75192										
SLC36A1	0	genome.wustl.edu	37	chr5	150858892	150858892	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tttcggcaggttgtaccagtCagttaagctgctgtactcca	10	10	1	0			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	5	150858892	150858892	C	T	SNP	SLC36A1	ENST00000243389	human	ensembl	69_37n	1	known	missense	c.1001	p.S334L	0.991	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	52	0	0	65	9	12.16	-	-	-	T	150858892	C	T	150858892	3	4	932	1	0	0	0	0	1	0	0	0	14682	838	29	2	1035	2	SLC36A1	5	150858892	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	4054408	150858892	30056368	11	75193										
HIST1H2BC	0	genome.wustl.edu	37	chr6	26123919	26123919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	agcctcgcccgcgatgcgctCaaatatgtcgttaacgaaag	10	12	1	0			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	6	26123919	26123919	C	G	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.214	p.E72Q	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	74	0	0	81	9	10	-	-	-	G	26123919	C	G	26123919	3	3	932	1	0	0	0	0	1	0	0	0	7193	835	29	2	170	2	HIST1H2BC	6	26123919	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		26123919	144991148	12	75194										
MYBPC3	0	genome.wustl.edu	37	chr11	47367798	47367798	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	cgcctcatgcccttgagcctCtttagcatgccgcgcaggtc	10	16	2	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	11	47367798	47367798	C	T	SNP	MYBPC3	ENST00000399249	human	ensembl	69_37n	-1	known	silent	c.1050	p.K350	0.999	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC3	HGNC	ENSG00000134571	43	0	0	41	6	12.77	-	-	-	T	47367798	C	T	47367798	2	4	932	1	0	0	0	0	0	0	0	1	10085	912	32	2		2	MYBPC3	11	47367798	Silent	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		47367798	87638718	13	75195										
ANO2	0	genome.wustl.edu	37	chr12	5853403	5853403	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	cctgcgcggtcccacaggctGagctgaggttccagtaatca	12	13	1	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	12	5853403	5853403	G	A	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.1262	p.S421L	0.964	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	54	0	0	69	11	13.75	-	-	-	A	5853403	G	A	5853403	3	1	932	1	0	0	0	0	1	0	0	0	696	1294	45	2	1797	2	ANO2	12	5853403	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09		5853403	127998492	14	75196										
DNAJC14	0	genome.wustl.edu	37	chr12	56217190	56217190	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	cccatctccaacttacatctCatactcctttcgcttttcag	2	16	3	0			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	12	56217190	56217190	C	T	SNP	DNAJC14	ENST00000317269	human	ensembl	69_37n	-1	known	missense	c.1510	p.E504K	1.000	pfam_DnaJ_N,pfscan_DnaJ_N	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC14	HGNC	ENSG00000135392	52	0	0	51	7	12.07	-	-	-	T	56217190	C	T	56217190	3	4	932	1	0	0	0	0	1	0	0	0	4668	835	29	2	618	2	DNAJC14	12	56217190	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	50363787	56217190	77634705	15	75197										
GRIP1	0	genome.wustl.edu	37	chr12	66788018	66788018	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	atccccctttagtgaggcttGaaatgattataggatcaaac	8	8	1	3			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	12	66788018	66788018	G	C	SNP	GRIP1	ENST00000359742	human	ensembl	69_37n	-1	known	nonsense	c.2099	p.S700*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	61	0	0	64	11	14.67	-	-	-	C	66788018	G	C	66788018	4	2	932	1	0	0	0	0	0	1	0	0	6838	1294	45	2	1323	2	GRIP1	12	66788018	Nonsense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	10570828	66788018	67063877	16	75198										
TMEM120B	0	genome.wustl.edu	37	chr12	122186340	122186340	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	atggaggcctacctgcccaaGaagaacgggtaggagctggc	15	10	0	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	12	122186340	122186340	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	silent	c.297	p.K99	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	18	0	0	27	7	20.59	-	-	-	A	122186340	G	A	122186340	2	1	932	1	0	0	0	0	0	0	0	1	16129	933	33	2		2	TMEM120B	12	122186340	Silent	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	55398322	122186340	11665555	17	75199										
TMEM120B	0	genome.wustl.edu	37	chr12	122199562	122199562	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tttccttgcacagggtgactGacgaagtcttcaacttcctg	9	11	2	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	12	122199562	122199562	G	T	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	1	known	missense	c.469	p.D157Y	0.997	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	37	0	0	42	7	14.29	-	-	-	T	122199562	G	T	122199562	3	4	932	1	0	0	0	0	1	0	0	0	16129	1290	45	2	491	2	TMEM120B	12	122199562	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	13222	122199562	11652333	18	75200										
SLC46A3	0	genome.wustl.edu	37	chr13	29287565	29287565	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	gcaccaacggaagacaaaatCatagggaattttcgtccgta	9	9	1	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	13	29287565	29287565	C	T	SNP	SLC46A3	ENST00000266943	human	ensembl	69_37n	-1	known	missense	c.312	p.M104I	0.316	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508	28	0	0	31	6	16.22	-	-	-	T	29287565	C	T	29287565	3	4	932	1	0	0	0	0	1	0	0	0	14735	826	29	2	1103	2	SLC46A3	13	29287565	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		29287565	85882313	19	75201										
ABCC4	0	genome.wustl.edu	37	chr13	95847154	95847154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	taccatctgacggcagctgaCggttgcgctgtgatatctca	11	11	2	3			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	13	95847154	95847154	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	69_37n	-1	known	missense	c.1199	p.R400H	0.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257	49	0	0	48	9	15.79	-	-	-	T	95847154	C	T	95847154	3	4	932	1	0	0	0	0	1	0	0	0	55	536	19	1	2919	1	ABCC4	13	95847154	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	66559589	95847154	19322724	20	75202										
DAD1	0	genome.wustl.edu	37	chr14	23057891	23057891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ccacacaagagatgaagcccGagagaaaagagttgaagggg	14	7	0	5			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	14	23057891	23057891	G	A	SNP	DAD1	ENST00000250498	human	ensembl	69_37n	-1	known	missense	c.173	p.S58L	1.000	pfam_DAD,pirsf_DAD	pfam_DAD,pirsf_DAD	-	no_errors	DAD1	HGNC	ENSG00000129562	25	0	0	28	7	20	-	-	-	A	23057891	G	A	23057891	3	1	932	1	0	0	0	0	1	0	0	0	4256	1059	37	1	176	1	DAD1	14	23057891	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09		23057891	84291649	21	75203										
ACTR10	0	genome.wustl.edu	37	chr14	58690363	58690363	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	gtacttgctttgtaagtgatCtgaagcgaggactaaaaatc	10	6	1	2			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	14	58690363	58690363	C	G	SNP	ACTR10	ENST00000254286	human	ensembl	69_37n	1	known	missense	c.658	p.L220V	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR10	HGNC	ENSG00000131966	78	0	0	68	11	13.58	-	-	-	G	58690363	C	G	58690363	3	3	932	1	0	0	0	0	1	0	0	0	208	912	32	2	692	2	ACTR10	14	58690363	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09	35632472	58690363	48659177	22	75204										
TP53	0	genome.wustl.edu	37	chr17	7577500	7577501	+	Frame_Shift_Ins	INS	-	-	A													0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tggcaagtggctcctgacctINSggagtcttccagtgtgatga							TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	17	7577500	7577501	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.781_780	p.S260fs	1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	39	0	0	38	6	13.64	-	-	-	A	7577501	-	A	7577500	7	5	932	1	0	1	1	0	0	0	0	0	16477	1594	55	0	509	0	TP53	17	7577500	Frame_Shift_Ins	INS	-	TCGA-GM-A2DI-01A-31D-A18P-09		7577500	73617710	23	75205										
C21orf59	0	genome.wustl.edu	37	chr21	33974174	33974174	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	tgtcatcagctggtgaacttCatcttggtctccactttatg	8	10	5	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	21	33974174	33974174	C	T	SNP	C21orf59	ENST00000290155	human	ensembl	69_37n	-1	known	silent	c.872	p.*291	1.000	NULL	pfam_DUF2870	-	no_errors	C21orf59	HGNC	ENSG00000159079	90	0	0	71	13	15.48	-	-	-	T	33974174	C	T	33974174	2	4	932	1	0	0	0	0	0	0	0	1	2150	837	29	2		2	C21orf59	21	33974174	Silent	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		33974174	14155721	24	75206										
BRWD3	0	genome.wustl.edu	37	chrX	79951434	79951434	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	ccagttcctttctttggcttCattataaaactgatgtagca	6	9	2	1			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	X	79951434	79951434	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	missense	c.3124	p.E1042K	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	62	0	0	45	9	16.67	-	-	-	T	79951434	C	T	79951434	3	4	932	1	0	0	0	0	1	0	0	0	1534	835	29	2	2344	2	BRWD3	23	79951434	Missense_Mutation	SNP	C	TCGA-GM-A2DI-01A-31D-A18P-09		79951434	75319126	25	75207										
WDR44	0	genome.wustl.edu	37	chrX	117529291	117529291	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.730769230769231	19	4.2446321101609e-09	4.33695652173913	5.25	4.01470588235294	0.0561609264322424	0.402989063857274	15	acctagatccaactctgggaGagagcttactgatgaggtag	12	8	1	4			TCGA-GM-A2DI-01A-31D-A18P-09	TCGA-GM-A2DI-11A-13D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a01d9f40-0c3c-4b36-a7fa-b1e755529402	9f237983-cac7-4eda-9ec8-a6c733f9c177	X	117529291	117529291	G	C	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	1	known	missense	c.1037	p.R346T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	49	0	0	55	13	18.84	-	-	-	C	117529291	G	C	117529291	3	2	932	1	0	0	0	0	1	0	0	0	17393	942	33	2	1059	2	WDR44	23	117529291	Missense_Mutation	SNP	G	TCGA-GM-A2DI-01A-31D-A18P-09	37577857	117529291	37741269	26	75208										
RBBP4	0	genome.wustl.edu	37	chr1	33117549	33117549	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	gcagtggaagaacgagtgatCaacgaggaatacaaaatatg	12	5	1	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	1	33117549	33117549	C	A	SNP	RBBP4	ENST00000373493	human	ensembl	69_37n	1	known	silent	c.51	p.I17	1.000	NULL	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521	33	0	0	47	11	18.97	-	-	-	A	33117549	C	A	33117549	2	1	933	1	0	0	0	0	0	0	0	1	13184	816	29	2		2	RBBP4	1	33117549	Silent	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09		33117549	216133072	1	75209										
PUS10	0	genome.wustl.edu	37	chr2	61233764	61233764	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	aattcaaacccagaggcctcAaccttttggcacacctgaaa	6	13	2	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	2	61233764	61233764	A	C	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	silent	c.396	p.V132	1.000	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	41	0	0	42	9	17.65	-	-	-	C	61233764	A	C	61233764	2	2	933	1	0	0	0	0	0	0	0	1	12914	117	5	5		5	PUS10	2	61233764	Silent	SNP	A	TCGA-GM-A2DK-01A-21D-A17W-09		61233764	181965609	2	75210										
FIGLA	0	genome.wustl.edu	37	chr2	71014794	71014794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	cctttacctttgagtctttgGctccttccaaaagatcactg	6	12	2	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	2	71014794	71014794	G	T	SNP	FIGLA	ENST00000332372	human	ensembl	69_37n	-1	known	missense	c.371	p.A124D	0.573	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FIGLA	HGNC	ENSG00000183733	58	0	0	58	17	22.37	-	-	-	T	71014794	G	T	71014794	3	4	933	1	0	0	0	0	1	0	0	0	5936	1203	42	4	304	4	FIGLA	2	71014794	Missense_Mutation	SNP	G	TCGA-GM-A2DK-01A-21D-A17W-09	9781030	71014794	172184579	3	75211										
BMPR2	0	genome.wustl.edu	37	chr2	203420014	203420014	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	cgtgtgccaaaaattggtccTtatccagattattcttcctc	6	11	1	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	2	203420014	203420014	T	C	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	silent	c.1626	p.P542	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	58	0	0	28	7	20	-	-	-	C	203420014	T	C	203420014	2	2	933	1	0	0	0	0	0	0	0	1	1476	1596	56	5		5	BMPR2	2	203420014	Silent	SNP	T	TCGA-GM-A2DK-01A-21D-A17W-09	132405220	203420014	39779359	4	75212										
WDFY3	0	genome.wustl.edu	37	chr4	85742538	85742538	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	agtttagaaatcttctctgcAaactgtgacaatgtgtgctg	9	7	2	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	4	85742538	85742538	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	69_37n	-1	known	silent	c.1290	p.F430	0.997	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	45	0	0	32	16	33.33	-	-	-	G	85742538	A	G	85742538	2	3	933	1	0	0	0	0	0	0	0	1	17367	127	5	5		5	WDFY3	4	85742538	Silent	SNP	A	TCGA-GM-A2DK-01A-21D-A17W-09		85742538	105411738	5	75213										
HTR1A	0	genome.wustl.edu	37	chr5	63256637	63256637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	ctcgctgggcagaggcaagtGctctttggagttgcccactc	13	12	1	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	5	63256637	63256637	G	A	SNP	HTR1A	ENST00000323865	human	ensembl	69_37n	-1	known	missense	c.910	p.H304Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394	20	0	0	36	10	21.74	-	-	-	A	63256637	G	A	63256637	3	1	933	1	0	0	0	0	1	0	0	0	7490	1319	46	4	361	4	HTR1A	5	63256637	Missense_Mutation	SNP	G	TCGA-GM-A2DK-01A-21D-A17W-09		63256637	117658623	6	75214										
PHACTR1	0	genome.wustl.edu	37	chr6	13273143	13273143	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	ctggaacagaggaacattttGaaacgtaagtgactaagccc	10	8	0	3			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	6	13273143	13273143	G	A	SNP	PHACTR1	ENST00000379350	human	ensembl	69_37n	1	known	silent	c.1443	p.L481	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	89	0	0	81	21	20.59	-	-	-	A	13273143	G	A	13273143	2	1	933	1	0	0	0	0	0	0	0	1	11883	1281	45	2		2	PHACTR1	6	13273143	Silent	SNP	G	TCGA-GM-A2DK-01A-21D-A17W-09		13273143	157841924	7	75215										
MAP3K5	0	genome.wustl.edu	37	chr6	136904772	136904773	+	Frame_Shift_Del	DEL	GA	GA	-													0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	ccagctccagtttcagctttGacagtgtggtggctatgatt							TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	6	136904772	136904773	GA	-	DEL	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	frame_shift_del	c.3332_3331	p.S1111fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	135	0	0	126	36	21.43	-	-	-	-	136904773	GA	-	136904772	7	5	933	1	0	1	0	1	0	0	0	0	9324	1294	45	0	820	0	MAP3K5	6	136904772	Frame_Shift_Del	DEL	GA	TCGA-GM-A2DK-01A-21D-A17W-09	123631629	136904772	34210295	8	75216										
SYNE1	0	genome.wustl.edu	37	chr6	152560688	152560688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	ctctagaatgtactccagctCcacacccctcttgtgagccc	6	17	2	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	6	152560688	152560688	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.20047	p.E6683Q	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	63	0	0	82	17	17.17	-	-	-	G	152560688	C	G	152560688	3	3	933	1	0	0	0	0	1	0	0	0	15537	864	30	2	6575	2	SYNE1	6	152560688	Missense_Mutation	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09	15655916	152560688	18554379	9	75217										
FAM86B1	0	genome.wustl.edu	37	chr8	12044217	12044217	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	ccccaaggtcacctgttaatGaaggctgccgggttctcgat	11	12	2	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	8	12044217	12044217	G	C	SNP	FAM86B1	ENST00000321602	human	ensembl	69_37n	-1	known	nonsense	c.50	p.S17*	0.804	NULL	NULL	-	no_errors	FAM86B1	HGNC	ENSG00000186523	15	0	0	27	11	28.95	-	-	-	C	12044217	G	C	12044217	4	2	933	1	0	0	0	0	0	1	0	0	5689	1281	45	2	540	2	FAM86B1	8	12044217	Nonsense_Mutation	SNP	G	TCGA-GM-A2DK-01A-21D-A17W-09		12044217	134319805	10	75218										
CYLC2	0	genome.wustl.edu	37	chr9	105767473	105767473	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tgaaaaaggaggtgcaaagaAagataacaaaaaagataaaa	9	2	0	4			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	9	105767473	105767473	A	C	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	1	putative	missense	c.560	p.K187T	0.431	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	120	0	0	58	20	25.64	-	-	-	C	105767473	A	C	105767473	3	2	933	1	0	0	0	0	1	0	0	0	4173	14	1	5	578	5	CYLC2	9	105767473	Missense_Mutation	SNP	A	TCGA-GM-A2DK-01A-21D-A17W-09		105767473	35445958	11	75219										
KRTAP5-4	0	genome.wustl.edu	37	chr11	1643266	1643266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	agagccacagcccccacagcCggagccacagcccccacagc	9	21	0	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	11	1643266	1643266	C	T	SNP	KRTAP5-4	ENST00000399682	human	ensembl	69_37n	-1	known	missense	c.58	p.G20S	0.974	NULL	NULL	-	no_errors	KRTAP5-4	HGNC	ENSG00000241598	51	0	0	51	18	26.09	-	-	-	T	1643266	C	T	1643266	3	4	933	1	0	0	0	0	1	0	0	0	8617	652	23	1	632	1	KRTAP5-4	11	1643266	Missense_Mutation	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09		1643266	133363250	12	75220										
R3HDM2	0	genome.wustl.edu	37	chr12	57696988	57696988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tttcctggcatgaccatggtTagatgtccgcctctgttaga	10	10	1	3			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	12	57696988	57696988	T	C	SNP	R3HDM2	ENST00000347140	human	ensembl	69_37n	-1	known	missense	c.178	p.N60D	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	52	0	0	49	39	44.32	-	-	-	C	57696988	T	C	57696988	3	2	933	1	0	0	0	0	1	0	0	0	12971	1754	61	5	2836	5	R3HDM2	12	57696988	Missense_Mutation	SNP	T	TCGA-GM-A2DK-01A-21D-A17W-09		57696988	76154907	13	75221										
FMN1	0	genome.wustl.edu	37	chr15	33359980	33359980	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	cgtaaacccaaatagggattTcatagagaacttactcagga	8	8	2	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	15	33359980	33359980	T	G	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.106	p.K36Q	1.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	61	0	0	45	10	18.18	-	-	-	G	33359980	T	G	33359980	3	3	933	1	0	0	0	0	1	0	0	0	5995	1792	62	5	3552	5	FMN1	15	33359980	Missense_Mutation	SNP	T	TCGA-GM-A2DK-01A-21D-A17W-09		33359980	69171412	14	75222										
BRD7	0	genome.wustl.edu	37	chr16	50388767	50388767	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	caagtctaatctcacaggggCgtgacactggagatcttttt	10	9	3	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	16	50388767	50388767	C	A	SNP	BRD7	ENST00000394689	human	ensembl	69_37n	-1	known	missense	c.325	p.A109S	0.012	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	91	0	0	98	27	21.6	-	-	-	A	50388767	C	A	50388767	3	1	933	1	0	0	0	0	1	0	0	0	1513	768	27	3	1693	3	BRD7	16	50388767	Missense_Mutation	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09		50388767	39965986	15	75223										
VAC14	0	genome.wustl.edu	37	chr16	70817042	70817042	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tctccaagaacaacctcacaCctatgaacaagaacaggaaa	5	12	2	3			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	16	70817042	70817042	C	T	SNP	VAC14	ENST00000261776	human	ensembl	69_37n	-1	known	missense	c.705	p.M235I	1.000	superfamily_ARM-type_fold	pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	41	0	0	54	23	29.87	-	-	-	T	70817042	C	T	70817042	3	4	933	1	0	0	0	0	1	0	0	0	17208	521	18	4	1695	4	VAC14	16	70817042	Missense_Mutation	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09	20428275	70817042	19537711	16	75224										
CDC6	0	genome.wustl.edu	37	chr17	38450651	38450651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tggatctcacagatagaattCtacctaggcttcaagctaga	8	9	3	3			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	17	38450651	38450651	C	T	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	1	known	silent	c.979	p.L327	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	71	0	0	91	13	12.5	-	-	-	T	38450651	C	T	38450651	2	4	933	1	0	0	0	0	0	0	0	1	3112	912	32	2		2	CDC6	17	38450651	Silent	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09		38450651	42744559	17	75225										
SLC4A1	0	genome.wustl.edu	37	chr17	42333063	42333063	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tgccagggaaataggagctgTtcttgaacttgcgcagcatc	12	9	1	1			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	17	42333063	42333063	T	C	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.1778	p.N593S	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	67	0	0	63	27	30	-	-	-	C	42333063	T	C	42333063	3	2	933	1	0	0	0	0	1	0	0	0	14739	1725	60	5	985	5	SLC4A1	17	42333063	Missense_Mutation	SNP	T	TCGA-GM-A2DK-01A-21D-A17W-09	3882412	42333063	38862147	18	75226										
DNAH17	0	genome.wustl.edu	37	chr17	76522783	76522783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	gctgaaggagaacggggcctCgcgcctgaacctctccctga	13	14	1	4			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	17	76522783	76522783	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.3661	p.E1221K	0.169	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	32	0	0	38	14	26.92	-	-	-	T	76522783	C	T	76522783	3	4	933	1	0	0	0	0	1	0	0	0	4637	893	31	1	9959	1	DNAH17	17	76522783	Missense_Mutation	SNP	C	TCGA-GM-A2DK-01A-21D-A17W-09	34189720	76522783	4672427	19	75227										
RP2	0	genome.wustl.edu	37	chrX	46736940	46736940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tttcttgggtttgcttatagGtcctgttattgccttggagt	11	6	1	0			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	X	46736940	46736940	G	A	SNP	RP2	ENST00000218340	human	ensembl	69_37n	1	known	missense	c.884	p.G295D	1.000	superfamily_Nucleoside_diP_kinase,pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218	326	0	0	303	47	13.43	-	-	-	A	46736940	G	A	46736940	3	1	933	1	0	0	0	0	1	0	0	0	13620	1275	44	4	898	4	RP2	23	46736940	Missense_Mutation	SNP	G	TCGA-GM-A2DK-01A-21D-A17W-09		46736940	108533620	20	75228										
DOCK11	0	genome.wustl.edu	37	chrX	117777490	117777490	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.142857142857143	3	0.533979863483298	1.82380952380952	2.73571428571429	1.56326530612245	1	1	0	tgatatacatcttgcttttcTtaaaaatggacaatctgaag	6	6	3	2			TCGA-GM-A2DK-01A-21D-A17W-09	TCGA-GM-A2DK-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0913724a-e8a8-43ed-8ba4-bfef389d6d25	8819ac99-cca4-4a90-a754-f910e8cdbbd2	X	117777490	117777490	T	C	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	1	known	missense	c.4331	p.L1444P	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	81	0	0	72	30	29.41	-	-	-	C	117777490	T	C	117777490	3	2	933	1	0	0	0	0	1	0	0	0	4721	1609	56	5	4489	5	DOCK11	23	117777490	Missense_Mutation	SNP	T	TCGA-GM-A2DK-01A-21D-A17W-09	71040550	117777490	37493070	21	75229										
TM2D1	0	genome.wustl.edu	37	chr1	62166636	62166636	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gtatccaaggtaaaatcgatCtgctcccaaccatccaagaa	6	12	1	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	62166636	62166636	C	G	SNP	TM2D1	ENST00000371180	human	ensembl	69_37n	-1	known	missense	c.595	p.D199H	1.000	pfam_TM2	pfam_TM2	-	no_errors	TM2D1	HGNC	ENSG00000162604	60	0	0	27	14	34.15	-	-	-	G	62166636	C	G	62166636	3	3	934	1	0	0	0	0	1	0	0	0	16058	913	32	2	226	2	TM2D1	1	62166636	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		62166636	187083985	1	75230										
CCDC18	0	genome.wustl.edu	37	chr1	93730309	93730309	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ggaagatttctgctgactctCaaaagtcttctgttcagcaa	8	9	5	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	93730309	93730309	C	G	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	1	known	missense	c.4090	p.Q1364E	1.000	superfamily_tRNA-bd_arm	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	43	0	0	31	12	27.91	-	-	-	G	93730309	C	G	93730309	3	3	934	1	0	0	0	0	1	0	0	0	2820	827	29	2	4196	2	CCDC18	1	93730309	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	31563673	93730309	155520312	2	75231										
LCE1A	0	genome.wustl.edu	37	chr1	152800020	152800020	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	cccaagtgccctcccaagtgCcccactcctaagtgcccccc	6	22	0	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	152800020	152800020	C	T	SNP	LCE1A	ENST00000335123	human	ensembl	69_37n	1	known	silent	c.72	p.C24	0.789	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844	139	0	0	41	15	26.79	-	-	-	T	152800020	C	T	152800020	2	4	934	1	0	0	0	0	0	0	0	1	8713	747	26	4		4	LCE1A	1	152800020	Silent	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	59069711	152800020	96450601	3	75232										
KCNT2	0	genome.wustl.edu	37	chr1	196367792	196367792	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	agcccatgctctcaaaattgTttggtgatcctgaagtgatc	9	9	1	3			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	196367792	196367792	T	G	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1195	p.T399P	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	51	0	0	19	12	38.71	-	-	-	G	196367792	T	G	196367792	3	3	934	1	0	0	0	0	1	0	0	0	8146	1725	60	5	2276	5	KCNT2	1	196367792	Missense_Mutation	SNP	T	TCGA-GM-A2DL-01A-11D-A18P-09	43567772	196367792	52882829	4	75233										
TTLL3	0	genome.wustl.edu	37	chr3	9874880	9874880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gcgatgtgtcatcggcggatGggggtccgcccagcagtccc	16	13	1	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	9874880	9874880	G	A	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	1	known	missense	c.2076	p.M692I	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	28	0	0	17	5	22.73	-	-	-	A	9874880	G	A	9874880	3	1	934	1	0	0	0	0	1	0	0	0	16825	1348	47	4	1685	4	TTLL3	3	9874880	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		9874880	188147550	5	75234										
ULK4	0	genome.wustl.edu	37	chr3	41942241	41942241	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ggattgtcgataatgggggtGacaacaagatctgagtccgt	14	6	1	3			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	41942241	41942241	G	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	silent	c.1263	p.V421	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	67	0	0	37	22	37.29	-	-	-	A	41942241	G	A	41942241	2	1	934	1	0	0	0	0	0	0	0	1	17075	1277	45	2		2	ULK4	3	41942241	Silent	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	32067361	41942241	156080189	6	75235										
ABI3BP	0	genome.wustl.edu	37	chr3	100489698	100489698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gttctgtggtgggctggtggCattcccctctgtggcctcct	14	12	2	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	100489698	100489698	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.2497	p.A833T	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	289	0	0	121	32	20.92	-	-	-	T	100489698	C	T	100489698	3	4	934	1	0	0	0	0	1	0	0	0	91	710	25	4	758	4	ABI3BP	3	100489698	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	58547457	100489698	97532732	7	75236										
IL31RA	0	genome.wustl.edu	37	chr5	55202014	55202014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ggcaaagctctgctctagacGtgaacacttggatgattgaa	11	8	2	4			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	55202014	55202014	G	T	SNP	IL31RA	ENST00000447346	human	ensembl	69_37n	1	known	missense	c.1150	p.V384L	0.612	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509	114	0	0	75	23	23.47	-	-	-	T	55202014	G	T	55202014	3	4	934	1	0	0	0	0	1	0	0	0	7745	1145	40	3	1184	3	IL31RA	5	55202014	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		55202014	125713246	8	75237										
TTC37	0	genome.wustl.edu	37	chr5	94877078	94877078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	acatcacaccacttctgcttGtcaacacttagaacaaaaca	3	13	3	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	94877078	94877078	G	T	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.333	p.D111E	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	46	0	0	19	11	36.67	-	-	-	T	94877078	G	T	94877078	3	4	934	1	0	0	0	0	1	0	0	0	16802	1368	48	4	4509	4	TTC37	5	94877078	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	39675064	94877078	86038182	9	75238										
ST8SIA4	0	genome.wustl.edu	37	chr5	100238563	100238563	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ttacccgatgagttgcgtctCctggtgctcctcagttcttg	10	12	3	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	100238563	100238563	C	A	SNP	ST8SIA4	ENST00000231461	human	ensembl	69_37n	-1	known	nonsense	c.97	p.E33*	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	93	0	0	54	23	29.87	-	-	-	A	100238563	C	A	100238563	4	1	934	1	0	0	0	0	0	1	0	0	15325	864	30	2	1006	2	ST8SIA4	5	100238563	Nonsense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	5361485	100238563	80676697	10	75239										
ODZ2	0	genome.wustl.edu	37	chr5	167674807	167674807	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ttccaagggcctcctaacaaGagcctacaacaaggccagcg	9	14	0	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	167674807	167674807	G	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	1	known	missense	c.6863	p.R2288I	0.999	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	28	0	0	23	7	23.33	-	-	-	T	167674807	G	T	167674807	3	4	934	1	0	0	0	0	1	0	0	0	10908	942	33	2	6942	2	ODZ2	5	167674807	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	67436244	167674807	13240453	11	75240										
LCP2	0	genome.wustl.edu	37	chr5	169714981	169714981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gaggagtacttacggcacccGgagcttggggaacttctgga	15	9	1	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	169714981	169714981	G	A	SNP	LCP2	ENST00000046794	human	ensembl	69_37n	-1	known	missense	c.181	p.R61W	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	98	0	0	45	13	22.41	-	-	-	A	169714981	G	A	169714981	3	1	934	1	0	0	0	0	1	0	0	0	8746	1115	39	1	1496	1	LCP2	5	169714981	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	2040174	169714981	11200279	12	75241										
TPMT	0	genome.wustl.edu	37	chr6	18139900	18139900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gtagtattcaacctacctggGaagatcaaaaatactgcaac	7	9	2	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	6	18139900	18139900	G	A	SNP	TPMT	ENST00000309983	human	ensembl	69_37n	-1	known	missense	c.415	p.P139S	1.000	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	-	no_errors	TPMT	HGNC	ENSG00000137364	60	0	0	19	11	36.67	-	-	-	A	18139900	G	A	18139900	3	1	934	1	0	0	0	0	1	0	0	0	16505	1174	41	2	342	2	TPMT	6	18139900	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		18139900	152975167	13	75242										
SYNE1	0	genome.wustl.edu	37	chr6	152804248	152804248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gctcaagtttccgttgtatcGtgtttgctgtttcctcgtgg	11	9	1	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	6	152804248	152804248	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.1322	p.T441M	0.995	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	151	0	0	79	36	31.3	-	-	-	A	152804248	G	A	152804248	3	1	934	1	0	0	0	0	1	0	0	0	15537	1145	40	1	25676	1	SYNE1	6	152804248	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	134664348	152804248	18310819	14	75243										
CALN1	0	genome.wustl.edu	37	chr7	71275372	71275372	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ggtctcattcaggctctcttCctcattgataatgatgttct	7	10	5	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	7	71275372	71275372	C	A	SNP	CALN1	ENST00000395275	human	ensembl	69_37n	-1	known	nonsense	c.607	p.E203*	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALN1	HGNC	ENSG00000183166	128	0	0	81	24	22.86	-	-	-	A	71275372	C	A	71275372	4	1	934	1	0	0	0	0	0	1	0	0	2616	864	30	2	186	2	CALN1	7	71275372	Nonsense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		71275372	87863291	15	75244										
NR5A1	0	genome.wustl.edu	37	chr9	127262398	127262398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	cttgaagaccatgcacctgcGtgcccagtccacgatggaga	11	13	0	3			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	9	127262398	127262398	G	A	SNP	NR5A1	ENST00000373588	human	ensembl	69_37n	-1	known	missense	c.841	p.R281C	0.997	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A1	HGNC	ENSG00000136931	26	0	0	13	5	27.78	-	-	-	A	127262398	G	A	127262398	3	1	934	1	0	0	0	0	1	0	0	0	10708	1145	40	1	560	1	NR5A1	9	127262398	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		127262398	13951033	16	75245										
SETX	0	genome.wustl.edu	37	chr9	135205171	135205171	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	atgcagaagtcagatccacaAaagtgttacatggaggtgct	11	7	1	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	9	135205171	135205171	A	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.1814	p.F605C	0.001	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	46	0	0	29	8	21.62	-	-	-	C	135205171	A	C	135205171	3	2	934	1	0	0	0	0	1	0	0	0	14229	14	1	5	6287	5	SETX	9	135205171	Missense_Mutation	SNP	A	TCGA-GM-A2DL-01A-11D-A18P-09	7942773	135205171	6008260	17	75246										
ARHGAP12	0	genome.wustl.edu	37	chr10	32128240	32128240	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gattgcttcttacctttggaCtgctggcctgaggaaaaaaa	10	8	1	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	10	32128240	32128240	C	A	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.1379	p.S460I	0.004	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	88	0	0	47	25	34.72	-	-	-	A	32128240	C	A	32128240	3	1	934	1	0	0	0	0	1	0	0	0	867	565	20	4	1209	4	ARHGAP12	10	32128240	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		32128240	103406507	18	75247										
NRG3	0	genome.wustl.edu	37	chr10	83635435	83635435	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gggatgggccaggaccccttCttcctctccaagcccagctc	10	17	2	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	10	83635435	83635435	C	A	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	1	known	missense	c.339	p.F113L	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	47	0	0	33	10	23.26	-	-	-	A	83635435	C	A	83635435	3	1	934	1	0	0	0	0	1	0	0	0	10722	912	32	2	341	2	NRG3	10	83635435	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	51507195	83635435	51899312	19	75248										
FOLH1	0	genome.wustl.edu	37	chr11	49168403	49168403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tccccaggccttggaagggtCcactttgctttcaatatcaa	8	12	2	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	11	49168403	49168403	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.2158	p.D720N	0.156	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	154	0	0	69	18	20.69	-	-	-	T	49168403	C	T	49168403	3	4	934	1	0	0	0	0	1	0	0	0	6025	855	30	2	98	2	FOLH1	11	49168403	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		49168403	85838113	20	75249										
RPUSD4	0	genome.wustl.edu	37	chr11	126075441	126075441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ctgagttacagcaacttgcgCattccggctgcgccgcactt	10	14	0	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	11	126075441	126075441	C	G	SNP	RPUSD4	ENST00000298317	human	ensembl	69_37n	-1	known	missense	c.718	p.A240P	0.982	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526	74	0	0	29	24	45.28	-	-	-	G	126075441	C	G	126075441	3	3	934	1	0	0	0	0	1	0	0	0	13755	710	25	4	427	4	RPUSD4	11	126075441	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	76907038	126075441	8931075	21	75250										
ACACB	0	genome.wustl.edu	37	chr12	109694027	109694027	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ccctgggcgcagaccgtggtGacaggacgagcaaggtaatc	15	11	0	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	12	109694027	109694027	G	T	SNP	ACACB	ENST00000538526	human	ensembl	69_37n	1	known	missense	c.2248	p.D750Y	0.999	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfam_AcCoA_COase_cen,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACACB	HGNC	ENSG00000076555	31	0	0	21	4	16	-	-	-	T	109694027	G	T	109694027	3	4	934	1	0	0	0	0	1	0	0	0	107	1277	45	2	6423	2	ACACB	12	109694027	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		109694027	24157868	22	75251										
NCOR2	0	genome.wustl.edu	37	chr12	124886970	124886970	+	Frame_Shift_Del	DEL	G	G	-													0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ttgaggaggtcttccttgtcGttctccacctccggcttctc							TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	12	124886970	124886970	G	-	DEL	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	frame_shift_del	c.1620	p.N540fs	0.053	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	118	0	0	86	20	18.35	-	-	-	-	124886970	G	-	124886970	7	5	934	1	0	1	0	1	0	0	0	0	10308	1136	40	0	6084	0	NCOR2	12	124886970	Frame_Shift_Del	DEL	G	TCGA-GM-A2DL-01A-11D-A18P-09	15192943	124886970	8964925	23	75252										
CDC16	0	genome.wustl.edu	37	chr13	115016085	115016085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tagcctatggacattcatttGcggtggagagtgagcacgac	13	8	1	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	13	115016085	115016085	G	T	SNP	CDC16	ENST00000356221	human	ensembl	69_37n	1	known	missense	c.1033	p.A345S	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177	82	0	0	36	4	10	-	-	-	T	115016085	G	T	115016085	3	4	934	1	0	0	0	0	1	0	0	0	3087	1319	46	4	1079	4	CDC16	13	115016085	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		115016085	153793	24	75253										
AKAP6	0	genome.wustl.edu	37	chr14	33015979	33015979	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	atctagtgacatagcctcttCactaggggagagcattgaat	10	8	3	3			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	14	33015979	33015979	C	T	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	1	known	missense	c.2120	p.S707L	0.997	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	52	0	0	27	16	37.21	-	-	-	T	33015979	C	T	33015979	3	4	934	1	0	0	0	0	1	0	0	0	455	838	29	2	2130	2	AKAP6	14	33015979	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		33015979	74333561	25	75254										
TXNDC16	0	genome.wustl.edu	37	chr14	52899269	52899269	+	Frame_Shift_Del	DEL	G	G	-													0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tacttagaaaatcataagctGgaagaggaggtttccattct							TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	14	52899269	52899269	G	-	DEL	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	frame_shift_del	c.2231	p.P744fs	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	33	0	0	17	6	26.09	-	-	-	-	52899269	G	-	52899269	7	5	934	1	0	1	0	1	0	0	0	0	16892	1348	47	0	250	0	TXNDC16	14	52899269	Frame_Shift_Del	DEL	G	TCGA-GM-A2DL-01A-11D-A18P-09	19883290	52899269	54450271	26	75255										
HCN4	0	genome.wustl.edu	37	chr15	73616015	73616015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	cccagatcctgggggagggcGgaagatggcagcaggcaggc	19	10	0	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	15	73616015	73616015	G	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2419	p.R807C	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	40	0	0	28	8	22.22	-	-	-	A	73616015	G	A	73616015	3	1	934	1	0	0	0	0	1	0	0	0	7050	1116	39	1	1196	1	HCN4	15	73616015	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		73616015	28915377	27	75256										
TP53	0	genome.wustl.edu	37	chr17	7577095	7577095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ttctcttcctctgtgcgccgGtctctcccaggacaggcaca	9	16	3	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	17	7577095	7577095	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.843	p.D281E	0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	88	0	0	33	12	26.67	-	-	-	T	7577095	G	T	7577095	3	4	934	1	0	0	0	0	1	0	0	0	16477	1252	44	4	443	4	TP53	17	7577095	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		7577095	73618115	28	75257										
PTPRM	0	genome.wustl.edu	37	chr18	8296407	8296407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gcaccatgggactcggctaaGaaagatgagaacagaatgaa	12	7	0	5			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	18	8296407	8296407	G	C	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.2799	p.K933N	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	88	0	0	29	22	43.14	-	-	-	C	8296407	G	C	8296407	3	2	934	1	0	0	0	0	1	0	0	0	12889	933	33	2	2874	2	PTPRM	18	8296407	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		8296407	69780841	29	75258										
TSHZ1	0	genome.wustl.edu	37	chr18	72999678	72999678	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ccctcgctggacccgctggcGatgctgtacaagatcagcaa	11	14	1	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	18	72999678	72999678	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	silent	c.2316	p.A772	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	25	0	0	8	7	46.67	-	-	-	A	72999678	G	A	72999678	2	1	934	1	0	0	0	0	0	0	0	1	16719	1045	37	1		1	TSHZ1	18	72999678	Silent	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	64703271	72999678	5077570	30	75259										
SAFB2	0	genome.wustl.edu	37	chr19	5595489	5595489	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tttctttgctttctgacttgCgatcctgactcttggagctc	8	11	3	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	19	5595489	5595489	C	A	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.1802	p.R601L	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	100	0	0	73	19	20.65	-	-	-	A	5595489	C	A	5595489	3	1	934	1	0	0	0	0	1	0	0	0	13893	768	27	3	1091	3	SAFB2	19	5595489	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		5595489	53533494	31	75260										
SIPA1L3	0	genome.wustl.edu	37	chr19	38694842	38694842	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	aaacagctgcacactgacctGcagaaggtaaggccgggggc	14	11	0	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	19	38694842	38694842	G	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	1	known	silent	c.5196	p.L1732	0.958	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	30	0	0	18	4	18.18	-	-	-	T	38694842	G	T	38694842	2	4	934	1	0	0	0	0	0	0	0	1	14420	1306	46	4		4	SIPA1L3	19	38694842	Silent	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	33099353	38694842	20434141	32	75261										
C20orf196	0	genome.wustl.edu	37	chr20	5753620	5753620	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tcctgcagggacccagccaaGaagccaacagcgaggctttc	11	14	0	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	20	5753620	5753620	G	A	SNP	C20orf196	ENST00000303142	human	ensembl	69_37n	1	known	missense	c.109	p.E37K	0.000	NULL	NULL	-	no_errors	C20orf196	HGNC	ENSG00000171984	59	0	0	44	20	31.25	-	-	-	A	5753620	G	A	5753620	3	1	934	1	0	0	0	0	1	0	0	0	2121	943	33	2	111	2	C20orf196	20	5753620	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09		5753620	57271900	33	75262										
EP300	0	genome.wustl.edu	37	chr22	41521913	41521913	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	cttatggttcaccatatactCagaatcctggacagcagatt	7	10	2	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	22	41521913	41521913	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	1	known	nonsense	c.775	p.Q259*	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	70	0	0	24	18	42.86	-	-	-	T	41521913	C	T	41521913	4	4	934	1	0	0	0	0	0	1	0	0	5185	827	29	2	785	2	EP300	22	41521913	Nonsense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09		41521913	9782653	34	75263										
MORF4L2	0	genome.wustl.edu	37	chrX	102931276	102931276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	ttacaaataatctcagtaggTgtggtgctccataaacctgg	9	8	1	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	102931276	102931276	T	G	SNP	MORF4L2	ENST00000360458	human	ensembl	69_37n	-1	known	missense	c.680	p.H227P	1.000	pfam_MRG	pfam_MRG,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562	62	0	0	27	11	28.95	-	-	-	G	102931276	T	G	102931276	3	3	934	1	0	0	0	0	1	0	0	0	9779	1696	59	5	190	5	MORF4L2	23	102931276	Missense_Mutation	SNP	T	TCGA-GM-A2DL-01A-11D-A18P-09		102931276	52339284	35	75264										
RGAG1	0	genome.wustl.edu	37	chrX	109694771	109694771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	agactctggaataatgtcatCgcttttaatgtcatctccag	7	9	4	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	109694771	109694771	C	T	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.926	p.S309L	0.692	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	89	0	0	44	21	32.31	-	-	-	T	109694771	C	T	109694771	3	4	934	1	0	0	0	0	1	0	0	0	13357	893	31	1	928	1	RGAG1	23	109694771	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	6763495	109694771	45575789	36	75265										
THOC2	0	genome.wustl.edu	37	chrX	122830637	122830637	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	attgtttgataagccctaatGattccagtgtttctggatcc	8	8	1	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	122830637	122830637	G	T	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	nonsense	c.401	p.S134*	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	146	0	0	94	31	24.8	-	-	-	T	122830637	G	T	122830637	4	4	934	1	0	0	0	0	0	1	0	0	15960	1294	45	2	4512	2	THOC2	23	122830637	Nonsense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	13135866	122830637	32439923	37	75266										
ELF4	0	genome.wustl.edu	37	chrX	129201241	129201241	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	aagttgggggaggccactgaGaatcagtggagcccctgggg	18	8	1	1			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	129201241	129201241	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1447	p.L483F	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	35	0	0	16	10	38.46	-	-	-	A	129201241	G	A	129201241	3	1	934	1	0	0	0	0	1	0	0	0	5093	942	33	2	548	2	ELF4	23	129201241	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	6370604	129201241	26069319	38	75267										
IGSF1	0	genome.wustl.edu	37	chrX	130409212	130409212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	gagtcatattttcgccagggGccaccatgggaccaggctgg	14	11	1	0			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	130409212	130409212	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3248	p.A1083D	0.900	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	44	0	0	34	4	10.53	-	-	-	T	130409212	G	T	130409212	3	4	934	1	0	0	0	0	1	0	0	0	7650	1203	42	4	793	4	IGSF1	23	130409212	Missense_Mutation	SNP	G	TCGA-GM-A2DL-01A-11D-A18P-09	1207971	130409212	24861348	39	75268										
GPR112	0	genome.wustl.edu	37	chrX	135427511	135427511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	8	0.0265003837415155	2.78678678678679	5.48648648648649	2.15156332803392	0.666846143491722	1	5	tgccatgtctacttccatgtCgaaagagacctcctctaaga	7	12	2	2			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	135427511	135427511	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	1	known	missense	c.1646	p.S549L	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	33	0	0	19	8	29.63	-	-	-	T	135427511	C	T	135427511	3	4	934	1	0	0	0	0	1	0	0	0	6679	893	31	1	1656	1	GPR112	23	135427511	Missense_Mutation	SNP	C	TCGA-GM-A2DL-01A-11D-A18P-09	5018299	135427511	19843049	40	75269										
NOC2L	0	genome.wustl.edu	37	chr1	892292	892292	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acctttgctgcctgcttccaTctctcaaccatggcgacggt	8	15	2	0			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	892292	892292	T	A	SNP	NOC2L	ENST00000327044	human	ensembl	69_37n	-1	known	missense	c.468	p.R156S	0.064	NULL	pfam_UPF0120,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976	95	0	0	76	32	29.63	-	-	-	A	892292	T	A	892292	3	1	935	1	0	0	0	0	1	0	0	0	10585	1432	50	5	1845	5	NOC2L	1	892292	Missense_Mutation	SNP	T	TCGA-GM-A2DM-01A-11D-A17W-09		892292	248358329	1	75270										
HRNR	0	genome.wustl.edu	37	chr1	152190761	152190761	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atccagagccctgtcggccaTagccagaagactgacttgag	11	12	0	5			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	152190761	152190761	T	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.3344	p.Y1115F	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	46	0	0	42	18	30	-	-	-	A	152190761	T	A	152190761	3	1	935	1	0	0	0	0	1	0	0	0	7410	1406	49	5	5212	5	HRNR	1	152190761	Missense_Mutation	SNP	T	TCGA-GM-A2DM-01A-11D-A17W-09	151298469	152190761	97059860	2	75271										
OBSCN	0	genome.wustl.edu	37	chr1	228494729	228494729	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcaagggctccctacagctCttcccttgtgccaagtacca	8	16	1	0			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	228494729	228494729	C	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.12054	p.L4018	0.406	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	23	0	0	26	10	27.78	-	-	-	A	228494729	C	A	228494729	2	1	935	1	0	0	0	0	0	0	0	1	10885	900	32	2		2	OBSCN	1	228494729	Silent	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09	76303968	228494729	20755892	3	75272										
LCT	0	genome.wustl.edu	37	chr2	136567501	136567501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gctgtaaccagaagggccttCgaagccatcaatgagggaac	12	10	1	2			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	2	136567501	136567501	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2416	p.E806K	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	47	0	0	37	21	36.21	-	-	-	T	136567501	C	T	136567501	3	4	935	1	0	0	0	0	1	0	0	0	8747	893	31	1	3407	1	LCT	2	136567501	Missense_Mutation	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09		136567501	106631872	4	75273										
RIF1	0	genome.wustl.edu	37	chr2	152276813	152276813	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggtacatttgcggggagcaActgctctggagatgggaatg	16	6	1	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	2	152276813	152276813	A	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	1	known	missense	c.613	p.T205A	0.987	pfam_Rif1_N,superfamily_ARM-type_fold	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	82	0	0	53	29	35.37	-	-	-	G	152276813	A	G	152276813	3	3	935	1	0	0	0	0	1	0	0	0	13443	43	2	5	635	5	RIF1	2	152276813	Missense_Mutation	SNP	A	TCGA-GM-A2DM-01A-11D-A17W-09	15709312	152276813	90922560	5	75274										
FAM172A	0	genome.wustl.edu	37	chr5	93217183	93217183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgatctcactcactctgataTacaattgcatcatttctttt	3	10	5	2			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	93217183	93217183	T	C	SNP	FAM172A	ENST00000395965	human	ensembl	69_37n	-1	known	missense	c.779	p.Y260C	0.998	NULL	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391	174	0	0	107	34	24.11	-	-	-	C	93217183	T	C	93217183	3	2	935	1	0	0	0	0	1	0	0	0	5532	1406	49	5	491	5	FAM172A	5	93217183	Missense_Mutation	SNP	T	TCGA-GM-A2DM-01A-11D-A17W-09		93217183	87698077	6	75275										
APC	0	genome.wustl.edu	37	chr5	112179735	112179735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgaataacaacacaaagaAgcgagattccaaaactgaca	7	8	0	4			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	112179735	112179735	A	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	1	known	missense	c.8444	p.K2815R	1.000	pfam_EB1-bd	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	52	0	0	44	6	12	-	-	-	G	112179735	A	G	112179735	3	3	935	1	0	0	0	0	1	0	0	0	764	72	3	5	8502	5	APC	5	112179735	Missense_Mutation	SNP	A	TCGA-GM-A2DM-01A-11D-A17W-09	18962552	112179735	68735525	7	75276										
FTMT	0	genome.wustl.edu	37	chr5	121188158	121188158	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggagtgtgctctactcttggAaaagaacgtgaaccagtcgt	12	8	2	2			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	121188158	121188158	A	G	SNP	FTMT	ENST00000321339	human	ensembl	69_37n	1	known	missense	c.500	p.E167G	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	12	0	0	19	5	20.83	-	-	-	G	121188158	A	G	121188158	3	3	935	1	0	0	0	0	1	0	0	0	6134	246	9	5	502	5	FTMT	5	121188158	Missense_Mutation	SNP	A	TCGA-GM-A2DM-01A-11D-A17W-09	9008423	121188158	59727102	8	75277										
LRRTM2	0	genome.wustl.edu	37	chr5	138209483	138209483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttccagtcaggtctagctttTctaaagtgccccaggtccac	8	13	3	0			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	138209483	138209483	T	C	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	missense	c.767	p.E256G	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	74	0	0	59	29	32.95	-	-	-	C	138209483	T	C	138209483	3	2	935	1	0	0	0	0	1	0	0	0	9106	1783	62	5	787	5	LRRTM2	5	138209483	Missense_Mutation	SNP	T	TCGA-GM-A2DM-01A-11D-A17W-09	17021325	138209483	42705777	9	75278										
MDGA1	0	genome.wustl.edu	37	chr6	37623624	37623624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	tctcctggtagaagttgcctCgcacatcgctcaccgtctgg	10	14	3	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	6	37623624	37623624	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.431	p.R144Q	0.975	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	30	0	0	26	18	40.91	-	-	-	T	37623624	C	T	37623624	3	4	935	1	0	0	0	0	1	0	0	0	9477	884	31	1	2492	1	MDGA1	6	37623624	Missense_Mutation	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09		37623624	133491443	10	75279										
ZNF479	0	genome.wustl.edu	37	chr7	57187569	57187569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attcacatttgtagggtttcTctccagtgtgaattatctta	7	7	3	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	7	57187569	57187569	T	C	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.1553	p.E518G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	81	0	0	58	46	44.23	-	-	-	C	57187569	T	C	57187569	3	2	935	1	0	0	0	0	1	0	0	0	18029	1551	54	5	25	5	ZNF479	7	57187569	Missense_Mutation	SNP	T	TCGA-GM-A2DM-01A-11D-A17W-09		57187569	101951094	11	75280										
GATA3	0	genome.wustl.edu	37	chr10	8115928	8115929	+	Frame_Shift_Ins	INS	-	-	A													0	0	1	0	0	0	1	1	0	cccacgccgatgcacccgccINSatccagcctgtcctttggac							TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	10	8115928	8115929	-	A	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.1277_1278	p.S427fs	0.981:0.204	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	68	0	0	49	26	34.67	-	-	-	A	8115929	-	A	8115928	7	5	935	1	0	1	1	0	0	0	0	0	6305	594	21	0	1295	0	GATA3	10	8115928	Frame_Shift_Ins	INS	-	TCGA-GM-A2DM-01A-11D-A17W-09		8115928	127418819	12	75281										
UNC13C	0	genome.wustl.edu	37	chr15	54847664	54847664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaggatgccaggggtctgaCgccaagacaatgcgctataa	13	9	1	3			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	15	54847664	54847664	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	1	known	missense	c.5912	p.T1971M	0.995	pfam_Munc13_subgr_dom-2	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	62	0	0	38	19	33.33	-	-	-	T	54847664	C	T	54847664	3	4	935	1	0	0	0	0	1	0	0	0	17083	536	19	1	6018	1	UNC13C	15	54847664	Missense_Mutation	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09		54847664	47683728	13	75282										
NTRK3	0	genome.wustl.edu	37	chr15	88420205	88420205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tagattggggtggccttcccCaaagcatggaggattttgta	13	7	0	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	15	88420205	88420205	C	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	missense	c.2481	p.L827F	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	45	0	0	52	17	24.64	-	-	-	A	88420205	C	A	88420205	3	1	935	1	0	0	0	0	1	0	0	0	10781	593	21	4	42	4	NTRK3	15	88420205	Missense_Mutation	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09	33572541	88420205	14111187	14	75283										
ABCC1	0	genome.wustl.edu	37	chr16	16139859	16139859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agaccgctgtcattggggctGtctatcggaaggtaggggac	16	8	2	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	16	16139859	16139859	G	T	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	1	known	missense	c.1207	p.V403F	0.974	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	92	0	0	79	24	23.3	-	-	-	T	16139859	G	T	16139859	3	4	935	1	0	0	0	0	1	0	0	0	49	1377	48	4	1241	4	ABCC1	16	16139859	Missense_Mutation	SNP	G	TCGA-GM-A2DM-01A-11D-A17W-09		16139859	74214894	15	75284										
FCGBP	0	genome.wustl.edu	37	chr19	40408834	40408834	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcaccacgggcagcttcatGtccacaccgttcacctggga	10	15	2	0			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	19	40408834	40408834	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.4005	p.D1335E	0.014	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	33	0	0	31	4	11.43	-	-	-	T	40408834	G	T	40408834	3	4	935	1	0	0	0	0	1	0	0	0	5824	1368	48	4	12328	4	FCGBP	19	40408834	Missense_Mutation	SNP	G	TCGA-GM-A2DM-01A-11D-A17W-09		40408834	18720149	16	75285										
TCF20	0	genome.wustl.edu	37	chr22	42609486	42609486	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	gacctgtcatggcttcccggGagacaatcaccccaacagtc	9	15	2	1			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	22	42609486	42609486	G	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.1826	p.S609C	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	23	0	0	20	9	31.03	-	-	-	C	42609486	G	C	42609486	3	2	935	1	0	0	0	0	1	0	0	0	15785	1174	41	2	4094	2	TCF20	22	42609486	Missense_Mutation	SNP	G	TCGA-GM-A2DM-01A-11D-A17W-09		42609486	8695080	17	75286										
KIAA2022	0	genome.wustl.edu	37	chrX	73962855	73962855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcttcctctttggaaccaaCtggcagccattccttcctct	5	15	3	0			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	X	73962855	73962855	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.1537	p.V513I	0.789	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	128	0	0	100	55	35.48	-	-	-	T	73962855	C	T	73962855	3	4	935	1	0	0	0	0	1	0	0	0	8321	565	20	4	3021	4	KIAA2022	23	73962855	Missense_Mutation	SNP	C	TCGA-GM-A2DM-01A-11D-A17W-09		73962855	81307705	18	75287										
CACNA1S	0	genome.wustl.edu	37	chr1	201030401	201030401	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	ggcagcccaggcacctggttCttgtccagctcacagttctt	10	14	3	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	1	201030401	201030401	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.3249	p.K1083	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	125	0	0	139	55	28.35	-	-	-	T	201030401	C	T	201030401	2	4	936	1	0	0	0	0	0	0	0	1	2572	912	32	2		2	CACNA1S	1	201030401	Silent	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		201030401	48220220	1	75288										
TET3	0	genome.wustl.edu	37	chr2	74273626	74273626	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	ccagctcatactgctcgcctGgaagatgcccacgatctggt	10	14	2	1			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	2	74273626	74273626	G	T	SNP	TET3	ENST00000409262	human	ensembl	69_37n	1	known	silent	c.177	p.L59	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	49	0	0	30	4	11.76	-	-	-	T	74273626	G	T	74273626	2	4	936	1	0	0	0	0	0	0	0	1	15866	1335	47	4		4	TET3	2	74273626	Silent	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09		74273626	168925747	2	75289										
COL4A3	0	genome.wustl.edu	37	chr2	228141148	228141148	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	caccagttccaggcccaccaGgacctccagggccccctggc	10	20	0	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	2	228141148	228141148	G	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	1	known	nonsense	c.1975	p.G659*	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	51	0	0	27	5	15.62	-	-	-	T	228141148	G	T	228141148	4	4	936	1	0	0	0	0	0	1	0	0	3721	1001	35	4	2081	4	COL4A3	2	228141148	Nonsense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09	153867522	228141148	15058225	3	75290										
GUCY1A3	0	genome.wustl.edu	37	chr4	156629403	156629403	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	tccaggaaatctttggaaagAgaagactttgaaaaaacaat	8	5	1	3			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	4	156629403	156629403	A	G	SNP	GUCY1A3	ENST00000296518	human	ensembl	69_37n	1	known	silent	c.333	p.R111	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116	38	0	0	28	6	17.65	-	-	-	G	156629403	A	G	156629403	2	3	936	1	0	0	0	0	0	0	0	1	6945	301	11	5		5	GUCY1A3	4	156629403	Silent	SNP	A	TCGA-GM-A2DN-01A-11D-A17W-09		156629403	34524873	4	75291										
HMGCLL1	0	genome.wustl.edu	37	chr6	55441929	55441929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	gactgagaagccagagacatCgggctgaaagcagtgaaggt	15	7	0	4			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	6	55441929	55441929	C	T	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.145	p.D49N	0.000	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	41	0	0	24	5	17.24	-	-	-	T	55441929	C	T	55441929	3	4	936	1	0	0	0	0	1	0	0	0	7281	884	31	1	1003	1	HMGCLL1	6	55441929	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		55441929	115673138	5	75292										
TNS3	0	genome.wustl.edu	37	chr7	47409188	47409188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	tcctcaccttcgcgtaaaggCtgccatcgacagggccctgc	10	16	1	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	7	47409188	47409188	C	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.1055	p.S352I	0.998	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	43	0	0	16	10	38.46	-	-	-	A	47409188	C	A	47409188	3	1	936	1	0	0	0	0	1	0	0	0	16439	797	28	4	3342	4	TNS3	7	47409188	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		47409188	111729475	6	75293										
ZNF479	0	genome.wustl.edu	37	chr7	57188319	57188319	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	cacattcttcacacgtgtagGgtttctctccagtatgagtt	8	10	3	1			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	7	57188319	57188319	G	T	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.803	p.P268H	0.660	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	84	0	0	30	5	14.29	-	-	-	T	57188319	G	T	57188319	3	4	936	1	0	0	0	0	1	0	0	0	18029	1232	43	4	775	4	ZNF479	7	57188319	Missense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09	9779131	57188319	101950344	7	75294										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	57	0	0	58	10	14.29	-	-	-	-	8111434	CA	-	8111433	8	5	936	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-GM-A2DN-01A-11D-A17W-09		8111433	127423314	8	75295										
MUC5B	0	genome.wustl.edu	37	chr11	1266862	1266862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	agcccctgggcctcgagtgcCgtgcccaggcccagcctggt	14	17	0	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	11	1266862	1266862	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	missense	c.8761	p.R2921C	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	44	0	0	17	5	22.73	-	-	-	T	1266862	C	T	1266862	3	4	936	1	0	0	0	0	1	0	0	0	10051	652	23	1	8883	1	MUC5B	11	1266862	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		1266862	133739654	9	75296										
BDKRB1	0	genome.wustl.edu	37	chr14	96730636	96730636	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	ctttgcaaggattgtggagtTaaatattctgggtttcctcc	10	7	1	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	14	96730636	96730636	T	C	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	1	known	missense	c.617	p.L206S	0.024	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	62	0	0	51	13	20.31	-	-	-	C	96730636	T	C	96730636	3	2	936	1	0	0	0	0	1	0	0	0	1396	1764	61	5	619	5	BDKRB1	14	96730636	Missense_Mutation	SNP	T	TCGA-GM-A2DN-01A-11D-A17W-09		96730636	10618904	10	75297										
HCN4	0	genome.wustl.edu	37	chr15	73616120	73616120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	gatcagcggggtccagatgaCgggcgtgggggttggggtgg	23	6	1	2			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	15	73616120	73616120	C	T	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2314	p.V772I	0.966	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	42	0	0	35	6	14.63	-	-	-	T	73616120	C	T	73616120	3	4	936	1	0	0	0	0	1	0	0	0	7050	536	19	1	1301	1	HCN4	15	73616120	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		73616120	28915272	11	75298										
CDH3	0	genome.wustl.edu	37	chr16	68725808	68725808	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	gtttcatcctccctgtgctgGgggctgtcctggctctgctg	13	13	2	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	16	68725808	68725808	G	T	SNP	CDH3	ENST00000264012	human	ensembl	69_37n	1	known	missense	c.1981	p.G661W	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	38	0	0	29	4	12.12	-	-	-	T	68725808	G	T	68725808	3	4	936	1	0	0	0	0	1	0	0	0	3140	1232	43	4	2031	4	CDH3	16	68725808	Missense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09		68725808	21628945	12	75299										
NCOR1	0	genome.wustl.edu	37	chr17	15989687	15989687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	gagggggcggtggcctggttGgtcgagttgtcggaagccga	21	7	0	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	17	15989687	15989687	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.3086	p.P1029Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	151	0	0	102	16	13.56	-	-	-	T	15989687	G	T	15989687	3	4	936	1	0	0	0	0	1	0	0	0	10307	1348	47	4	4332	4	NCOR1	17	15989687	Missense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09		15989687	65205523	13	75300										
CLTC	0	genome.wustl.edu	37	chr17	57725727	57725727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	atgcagaagaatcaacgttaTtttgttttgcagttcggggc	11	6	1	2			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	17	57725727	57725727	T	C	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	1	known	missense	c.646	p.F216L	1.000	pfam_Clathrin_H-chain_propeller_rpt,superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	106	0	0	67	10	12.99	-	-	-	C	57725727	T	C	57725727	3	2	936	1	0	0	0	0	1	0	0	0	3596	1493	52	5	660	5	CLTC	17	57725727	Missense_Mutation	SNP	T	TCGA-GM-A2DN-01A-11D-A17W-09	41736040	57725727	23469483	14	75301										
FBN3	0	genome.wustl.edu	37	chr19	8131020	8131020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	ttccgcggacgatgacgtagCggatccggccctctagaccc	12	15	1	2			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	8131020	8131020	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.8213	p.R2738H	1.000	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	19	0	0	16	5	23.81	-	-	-	T	8131020	C	T	8131020	3	4	936	1	0	0	0	0	1	0	0	0	5750	768	27	1	220	1	FBN3	19	8131020	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		8131020	50997963	15	75302										
CRLF1	0	genome.wustl.edu	37	chr19	18705148	18705148	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	agcagtacgcgtgcttcttgAgccagcccaggaactgcttg	12	12	1	1			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	18705148	18705148	A	T	SNP	CRLF1	ENST00000392386	human	ensembl	69_37n	-1	known	missense	c.1121	p.L374H	0.991	NULL	pfam_Fibronectin_type3,pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF1	HGNC	ENSG00000006016	9	0	0	19	6	24	-	-	-	T	18705148	A	T	18705148	3	4	936	1	0	0	0	0	1	0	0	0	3916	304	11	5	159	5	CRLF1	19	18705148	Missense_Mutation	SNP	A	TCGA-GM-A2DN-01A-11D-A17W-09	10574128	18705148	40423835	16	75303										
TULP2	0	genome.wustl.edu	37	chr19	49398637	49398637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	aaatacctgcttctgtccgcGgtgtcgggaggccgcgctcg	14	13	1	0			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	49398637	49398637	G	A	SNP	TULP2	ENST00000221399	human	ensembl	69_37n	-1	known	missense	c.335	p.P112L	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804	56	0	0	63	13	17.11	-	-	-	A	49398637	G	A	49398637	3	1	936	1	0	0	0	0	1	0	0	0	16871	1116	39	1	1263	1	TULP2	19	49398637	Missense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09	30693489	49398637	9730346	17	75304										
KIF16B	0	genome.wustl.edu	37	chr20	16410515	16410515	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	aatcagtttctacctttaaaTgatataagatgattccagta	5	6	2	3			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	20	16410515	16410515	T	G	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.1415	p.H472P	1.000	superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	74	0	0	53	7	11.67	-	-	-	G	16410515	T	G	16410515	3	3	936	1	0	0	0	0	1	0	0	0	8330	1464	51	5	2594	5	KIF16B	20	16410515	Missense_Mutation	SNP	T	TCGA-GM-A2DN-01A-11D-A17W-09		16410515	46615005	18	75305										
EIF4ENIF1	0	genome.wustl.edu	37	chr22	31851272	31851272	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	aaagtaattccccgagttctGtccaggagagaggatggctt	12	8	1	1			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	22	31851272	31851272	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	nonsense	c.1129	p.Q377*	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	104	0	0	60	18	23.08	-	-	-	A	31851272	G	A	31851272	4	1	936	1	0	0	0	0	0	1	0	0	5072	1386	48	4	1875	4	EIF4ENIF1	22	31851272	Nonsense_Mutation	SNP	G	TCGA-GM-A2DN-01A-11D-A17W-09		31851272	19453294	19	75306										
MID1	0	genome.wustl.edu	37	chrX	10535215	10535215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.876436643075864	1.27325581395349	NA	1.27325581395349	1	1	0	cacagcgtcctgggcaggatCctggtcacaaaactggcaga	12	12	1	1			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	X	10535215	10535215	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.373	p.D125N	1.000	smart_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	54	0	0	47	8	14.55	-	-	-	T	10535215	C	T	10535215	3	4	936	1	0	0	0	0	1	0	0	0	9647	855	30	2	1666	2	MID1	23	10535215	Missense_Mutation	SNP	C	TCGA-GM-A2DN-01A-11D-A17W-09		10535215	144735345	20	75307										
KHDRBS1	0	genome.wustl.edu	37	chr1	32495999	32495999	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aaactgaaagagcgagtgctGatacctgtcaagcagtatcc	10	9	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	1	32495999	32495999	G	A	SNP	KHDRBS1	ENST00000327300	human	ensembl	69_37n	1	known	silent	c.483	p.L161	1.000	pfam_KH_dom_type_1,smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	56	0	0	43	6	12.24	-	-	-	A	32495999	G	A	32495999	2	1	937	1	0	0	0	0	0	0	0	1	8198	1277	45	2		2	KHDRBS1	1	32495999	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		32495999	216754622	1	75308										
CLSPN	0	genome.wustl.edu	37	chr1	36202188	36202188	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtgaaggagaagtcatgaaaGatggaccccttttctttacc	10	8	2	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	1	36202188	36202188	G	C	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	missense	c.3929	p.S1310C	0.013	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	86	0	0	85	14	14.14	-	-	-	C	36202188	G	C	36202188	3	2	937	1	0	0	0	0	1	0	0	0	3590	942	33	2	94	2	CLSPN	1	36202188	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	3706189	36202188	213048433	2	75309										
ST3GAL3	0	genome.wustl.edu	37	chr1	44365326	44365326	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tgagcagtacgagcgcgattCtctctttgtcctcgccggct	11	13	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	1	44365326	44365326	C	A	SNP	ST3GAL3	ENST00000262915	human	ensembl	69_37n	1	known	missense	c.878	p.S293Y	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091	81	0	0	59	8	11.94	-	-	-	A	44365326	C	A	44365326	3	1	937	1	0	0	0	0	1	0	0	0	15307	913	32	2	912	2	ST3GAL3	1	44365326	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	8163138	44365326	204885295	3	75310										
MIA3	0	genome.wustl.edu	37	chr1	222827736	222827736	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttctgcaatttttagacacaGactgcaatatcggtagttga	8	7	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	1	222827736	222827736	G	A	SNP	MIA3	ENST00000354906	human	ensembl	69_37n	1	known	missense	c.2953	p.D985N	0.989	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	MIA3	HGNC	ENSG00000154305	150	0	0	105	14	11.67	-	-	-	A	222827736	G	A	222827736	3	1	937	1	0	0	0	0	1	0	0	0	9636	933	33	2	4449	2	MIA3	1	222827736	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	178462410	222827736	26422885	4	75311										
GREM2	0	genome.wustl.edu	37	chr1	240656380	240656380	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ccggggcactcgagctccacGaggacggaggtgacgcgctg	17	13	0	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	1	240656380	240656380	G	C	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	silent	c.396	p.L132	0.083	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	29	0	0	27	4	12.9	-	-	-	C	240656380	G	C	240656380	2	2	937	1	0	0	0	0	0	0	0	1	6813	1045	37	3		3	GREM2	1	240656380	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	17828644	240656380	8594241	5	75312										
NEB	0	genome.wustl.edu	37	chr2	152474912	152474912	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctaagtaattctccagctctCttggccctaacaacttccaa	4	14	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	2	152474912	152474912	C	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.10953	p.K3651N	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	80	0	0	48	13	21.31	-	-	-	G	152474912	C	G	152474912	3	3	937	1	0	0	0	0	1	0	0	0	10374	912	32	2	15169	2	NEB	2	152474912	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		152474912	90724461	6	75313										
STK17B	0	genome.wustl.edu	37	chr2	197010664	197010664	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aaggtgtacaatgttattctGatgtagataataaactcctt	7	5	1	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	2	197010664	197010664	G	A	SNP	STK17B	ENST00000263955	human	ensembl	69_37n	-1	known	nonsense	c.451	p.Q151*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK17B	HGNC	ENSG00000081320	34	0	0	40	9	18.37	-	-	-	A	197010664	G	A	197010664	4	1	937	1	0	0	0	0	0	1	0	0	15382	1299	45	2	687	2	STK17B	2	197010664	Nonsense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	44535752	197010664	46188709	7	75314										
SLCO2A1	0	genome.wustl.edu	37	chr3	133654634	133654634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcacctgtctcggagagcatCgttgtcatagtaggcgcagg	13	10	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	3	133654634	133654634	C	T	SNP	SLCO2A1	ENST00000310926	human	ensembl	69_37n	-1	known	missense	c.1798	p.D600N	0.031	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640	70	0	0	52	6	10.34	-	-	-	T	133654634	C	T	133654634	3	4	937	1	0	0	0	0	1	0	0	0	14815	884	31	1	141	1	SLCO2A1	3	133654634	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		133654634	64367796	8	75315										
LEKR1	0	genome.wustl.edu	37	chr3	156763253	156763253	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcgtggaagtttaccattctCaccgtgttccctcagcaagg	9	12	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	3	156763253	156763253	C	T	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	1	known	missense	c.1793	p.S598L	0.291	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	50	0	0	38	5	11.63	-	-	-	T	156763253	C	T	156763253	3	4	937	1	0	0	0	0	1	0	0	0	8771	838	29	2	1839	2	LEKR1	3	156763253	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	23108619	156763253	41259177	9	75316										
TAS2R1	0	genome.wustl.edu	37	chr5	9629959	9629959	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	acaatcacattaacgtagaaGatgaacaactgcagaaaaat	6	7	1	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	9629959	9629959	G	C	SNP	TAS2R1	ENST00000382492	human	ensembl	69_37n	-1	known	missense	c.186	p.I62M	0.006	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R1	HGNC	ENSG00000169777	27	0	0	21	8	27.59	-	-	-	C	9629959	G	C	9629959	3	2	937	1	0	0	0	0	1	0	0	0	15657	932	33	2	717	2	TAS2R1	5	9629959	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		9629959	171285301	10	75317										
MCCC2	0	genome.wustl.edu	37	chr5	70930839	70930839	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	cacttaactaggaaggttgtGaggaatctaaattatcagaa	9	5	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	70930839	70930839	G	A	SNP	MCCC2	ENST00000340941	human	ensembl	69_37n	1	known	silent	c.873	p.V291	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	MCCC2	HGNC	ENSG00000131844	115	0	0	78	11	12.36	-	-	-	A	70930839	G	A	70930839	2	1	937	1	0	0	0	0	0	0	0	1	9446	1277	45	2		2	MCCC2	5	70930839	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	61300880	70930839	109984421	11	75318										
BTF3	0	genome.wustl.edu	37	chr5	72798840	72798840	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcaccattacaggccatgctGagacaaagcagctgacagaa	9	11	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	72798840	72798840	G	C	SNP	BTF3	ENST00000380591	human	ensembl	69_37n	1	known	missense	c.415	p.E139Q	1.000	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	BTF3	HGNC	ENSG00000145741	40	0	0	33	7	17.5	-	-	-	C	72798840	G	C	72798840	3	2	937	1	0	0	0	0	1	0	0	0	1560	1291	45	2	429	2	BTF3	5	72798840	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	1868001	72798840	108116420	12	75319										
PCDHA8	0	genome.wustl.edu	37	chr5	140220923	140220923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	taacatggattatcactggcGaggagagctgggatcctggc	14	8	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	140220923	140220923	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.17	p.R6Q	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	48	0	0	54	8	12.9	-	-	-	A	140220923	G	A	140220923	3	1	937	1	0	0	0	0	1	0	0	0	11603	1058	37	1	19	1	PCDHA8	5	140220923	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	67422083	140220923	40694337	13	75320										
PCDHA8	0	genome.wustl.edu	37	chr5	140222831	140222831	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tgtcctggacgaagcggactCtccgcgccaccgtctgctgg	13	15	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	140222831	140222831	C	G	SNP	PCDHA8	ENST00000531613	human	ensembl	69_37n	1	known	missense	c.1925	p.S642C	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	75	0	0	51	8	13.56	-	-	-	G	140222831	C	G	140222831	3	3	937	1	0	0	0	0	1	0	0	0	11603	913	32	2	1927	2	PCDHA8	5	140222831	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	1908	140222831	40692429	14	75321										
PCDHGB3	0	genome.wustl.edu	37	chr5	140752311	140752311	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	cacaagatcttctatgtgatGaagcctcttggtttgaaagt	9	7	3	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	140752311	140752311	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	69_37n	1	known	missense	c.2350	p.E784K	0.026	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209	53	0	0	64	9	12.33	-	-	-	A	140752311	G	A	140752311	3	1	937	1	0	0	0	0	1	0	0	0	11637	1291	45	2	2352	2	PCDHGB3	5	140752311	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	529480	140752311	40162949	15	75322										
PCDH12	0	genome.wustl.edu	37	chr5	141336485	141336485	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aggcagggttcttttcatagTctagaggtcgacgcagaatg	13	7	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	5	141336485	141336485	T	A	SNP	PCDH12	ENST00000231484	human	ensembl	69_37n	-1	known	missense	c.932	p.D311V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	62	0	0	40	17	29.82	-	-	-	A	141336485	T	A	141336485	3	1	937	1	0	0	0	0	1	0	0	0	11583	1667	58	5	2638	5	PCDH12	5	141336485	Missense_Mutation	SNP	T	TCGA-GM-A2DO-01A-11D-A19Y-09	584174	141336485	39578775	16	75323										
OR2J2	0	genome.wustl.edu	37	chr6	29142120	29142120	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	caatcaaccactgggcttcaGaaagtgtttaggacatgtgg	11	8	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	6	29142120	29142120	G	C	SNP	OR2J2	ENST00000377167	human	ensembl	69_37n	1	known	missense	c.708	p.Q236H	0.211	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700	64	0	0	35	7	16.67	-	-	-	C	29142120	G	C	29142120	3	2	937	1	0	0	0	0	1	0	0	0	11076	933	33	2	710	2	OR2J2	6	29142120	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		29142120	141972947	17	75324										
MYO6	0	genome.wustl.edu	37	chr6	76566933	76566933	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtgttttccttttgaaacatCatcctattttattggagtcc	6	8	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	6	76566933	76566933	C	T	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	1	known	missense	c.1343	p.S448L	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	151	0	0	121	18	12.95	-	-	-	T	76566933	C	T	76566933	3	4	937	1	0	0	0	0	1	0	0	0	10153	838	29	2	1389	2	MYO6	6	76566933	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	47424813	76566933	94548134	18	75325										
IBTK	0	genome.wustl.edu	37	chr6	82923947	82923947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	taaaagagaaatcatacctaCtactcaaattactgaagtcg	5	8	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	6	82923947	82923947	C	T	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.2201	p.S734N	1.000	smart_BTB/POZ-like	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	61	0	0	58	9	13.43	-	-	-	T	82923947	C	T	82923947	3	4	937	1	0	0	0	0	1	0	0	0	7530	565	20	4	1932	4	IBTK	6	82923947	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	6357014	82923947	88191120	19	75326										
IL22RA2	0	genome.wustl.edu	37	chr6	137476183	137476183	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttcctgtatgtctgaggtttCactggtaaggtcacaagaga	11	7	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	6	137476183	137476183	C	A	SNP	IL22RA2	ENST00000296980	human	ensembl	69_37n	-1	known	nonsense	c.367	p.E123*	1.000	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL22RA2	HGNC	ENSG00000164485	75	0	0	62	7	10.14	-	-	-	A	137476183	C	A	137476183	4	1	937	1	0	0	0	0	0	1	0	0	7728	835	29	2	436	2	IL22RA2	6	137476183	Nonsense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	54552236	137476183	33638884	20	75327										
NT5C3	0	genome.wustl.edu	37	chr7	33066431	33066431	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttcttgataattattcacctGaagtttggcagctcctcctt	6	10	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	33066431	33066431	G	A	SNP	NT5C3	ENST00000242210	human	ensembl	69_37n	-1	known	nonsense	c.250	p.Q84*	1.000	superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3	HGNC	ENSG00000122643	82	0	0	81	10	10.99	-	-	-	A	33066431	G	A	33066431	4	1	937	1	0	0	0	0	0	1	0	0	10761	1299	45	2	792	2	NT5C3	7	33066431	Nonsense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		33066431	126072232	21	75328										
GLI3	0	genome.wustl.edu	37	chr7	42065886	42065886	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gcctctgtgttggaaaagttGgggcagggtggatgagtgga	19	4	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	42065886	42065886	G	A	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.1154	p.P385L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	154	0	0	119	21	15	-	-	-	A	42065886	G	A	42065886	3	1	937	1	0	0	0	0	1	0	0	0	6491	1348	47	4	3620	4	GLI3	7	42065886	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	8999455	42065886	117072777	22	75329										
BLVRA	0	genome.wustl.edu	37	chr7	43843326	43843326	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ccctgcattcagcggcatctCtcgcctgacctggctggtct	10	16	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	43843326	43843326	C	A	SNP	BLVRA	ENST00000265523	human	ensembl	69_37n	1	known	missense	c.512	p.S171Y	1.000	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605	41	0	0	43	6	12.24	-	-	-	A	43843326	C	A	43843326	3	1	937	1	0	0	0	0	1	0	0	0	1456	913	32	2	534	2	BLVRA	7	43843326	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	1777440	43843326	115295337	23	75330										
ABCB4	0	genome.wustl.edu	37	chr7	87035650	87035650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtatgttggcagctttggctGcactcacaatttcatcctgt	9	10	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	87035650	87035650	G	A	SNP	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	missense	c.3461	p.A1154V	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	77	0	0	53	7	11.67	-	-	-	A	87035650	G	A	87035650	3	1	937	1	0	0	0	0	1	0	0	0	43	1319	46	4	411	4	ABCB4	7	87035650	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	43192324	87035650	72103013	24	75331										
CNPY4	0	genome.wustl.edu	37	chr7	99719923	99719923	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agctacaggcggaactgagtCgcaccggtcgatctcgagag	14	11	1	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	99719923	99719923	C	G	SNP	CNPY4	ENST00000262932	human	ensembl	69_37n	1	known	missense	c.160	p.R54G	0.995	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY4	HGNC	ENSG00000166997	62	0	0	52	6	10.34	-	-	-	G	99719923	C	G	99719923	3	3	937	1	0	0	0	0	1	0	0	0	3660	884	31	3	166	3	CNPY4	7	99719923	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	12684273	99719923	59418740	25	75332										
TES	0	genome.wustl.edu	37	chr7	115890508	115890508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agcaccccagcagcagtgggGgccatggaggacaaatctgc	14	12	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	7	115890508	115890508	G	A	SNP	TES	ENST00000393484	human	ensembl	69_37n	1	putative	missense	c.20	p.G7E	0.533	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TES	HGNC	ENSG00000135269	54	0	0	47	10	17.54	-	-	-	A	115890508	G	A	115890508	3	1	937	1	0	0	0	0	1	0	0	0	15860	1219	43	4	674	4	TES	7	115890508	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	16170585	115890508	43248155	26	75333										
KIAA0146	0	genome.wustl.edu	37	chr8	48586495	48586495	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aaggttctacagaaagtcacCagaggaaggtgagaacgtgc	13	7	2	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	8	48586495	48586495	C	G	SNP	KIAA0146	ENST00000519401	human	ensembl	69_37n	1	putative	missense	c.722	p.P241R	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA0146	HGNC	ENSG00000164808	45	0	0	28	7	20	-	-	-	G	48586495	C	G	48586495	3	3	937	1	0	0	0	0	1	0	0	0	8209	581	21	4	1719	4	KIAA0146	8	48586495	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		48586495	97777527	27	75334										
TGS1	0	genome.wustl.edu	37	chr8	56711671	56711671	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agagcgtatcttcagctggtGaacttgaaacagaaaactat	9	7	2	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	8	56711671	56711671	G	T	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	nonsense	c.1741	p.E581*	0.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	49	0	0	54	6	10	-	-	-	T	56711671	G	T	56711671	4	4	937	1	0	0	0	0	0	1	0	0	15932	1291	45	2	1771	2	TGS1	8	56711671	Nonsense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	8125176	56711671	89652351	28	75335										
WWP1	0	genome.wustl.edu	37	chr8	87454969	87454969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	caaccattaatccagaccatCtttcatacttctgtttcatt	2	12	4	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	8	87454969	87454969	C	G	SNP	WWP1	ENST00000265428	human	ensembl	69_37n	1	known	missense	c.1960	p.L654V	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	WWP1	HGNC	ENSG00000123124	90	0	0	80	10	10.99	-	-	-	G	87454969	C	G	87454969	3	3	937	1	0	0	0	0	1	0	0	0	17512	913	32	2	2022	2	WWP1	8	87454969	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	30743298	87454969	58909053	29	75336										
MATN2	0	genome.wustl.edu	37	chr8	99006790	99006790	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcctattcctgccactgcctGaaaggctttaccctgaatcc	6	15	0	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	8	99006790	99006790	G	C	SNP	MATN2	ENST00000518154	human	ensembl	69_37n	1	novel	missense	c.511	p.E171Q	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWF_A,pfscan_EG-like_dom,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MATN2	HGNC	ENSG00000132561	71	0	0	51	11	17.74	-	-	-	C	99006790	G	C	99006790	3	2	937	1	0	0	0	0	1	0	0	0	9405	1277	45	2	1186	2	MATN2	8	99006790	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	11551821	99006790	47357232	30	75337										
IFNA16	0	genome.wustl.edu	37	chr9	21217072	21217072	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggatcatctcatggaaggcaGagatggcttgagccttctgg	14	8	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	9	21217072	21217072	G	A	SNP	IFNA16	ENST00000380216	human	ensembl	69_37n	-1	known	missense	c.233	p.S78F	0.014	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885	100	0	0	57	18	24	-	-	-	A	21217072	G	A	21217072	3	1	937	1	0	0	0	0	1	0	0	0	7589	942	33	2	340	2	IFNA16	9	21217072	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		21217072	119996359	31	75338										
MAMDC2	0	genome.wustl.edu	37	chr9	72746489	72746489	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gaggttatgttgccctggatGatatttcattctctcctgtt	9	8	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	9	72746489	72746489	G	A	SNP	MAMDC2	ENST00000377182	human	ensembl	69_37n	1	known	missense	c.955	p.D319N	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	180	0	0	99	12	10.71	-	-	-	A	72746489	G	A	72746489	3	1	937	1	0	0	0	0	1	0	0	0	9274	1290	45	2	981	2	MAMDC2	9	72746489	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	51529417	72746489	68466942	32	75339										
MURC	0	genome.wustl.edu	37	chr9	103348411	103348411	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aggggagaggtttaagaaatCtatttctaatgcagctccct	10	7	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	9	103348411	103348411	C	G	SNP	MURC	ENST00000307584	human	ensembl	69_37n	1	known	missense	c.773	p.S258C	0.998	NULL	NULL	-	no_errors	MURC	HGNC	ENSG00000170681	41	0	0	36	6	14.29	-	-	-	G	103348411	C	G	103348411	3	3	937	1	0	0	0	0	1	0	0	0	10059	913	32	2	779	2	MURC	9	103348411	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	30601922	103348411	37865020	33	75340										
OR13C9	0	genome.wustl.edu	37	chr9	107380084	107380084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	taggcattcttgctcatgatGatgggatatctcagagggtt	12	6	3	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	9	107380084	107380084	G	A	SNP	OR13C9	ENST00000259362	human	ensembl	69_37n	-1	known	silent	c.402	p.I134	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	101	0	0	56	9	13.85	-	-	-	A	107380084	G	A	107380084	2	1	937	1	0	0	0	0	0	0	0	1	11012	1280	45	2		2	OR13C9	9	107380084	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	4031673	107380084	33833347	34	75341										
AKNA	0	genome.wustl.edu	37	chr9	117099426	117099426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggtggtagagcggacgctctCggcagcctgcacggcccggc	17	14	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	9	117099426	117099426	C	T	SNP	AKNA	ENST00000307564	human	ensembl	69_37n	-1	known	missense	c.4228	p.E1410K	0.008	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	36	0	0	33	4	10.81	-	-	-	T	117099426	C	T	117099426	3	4	937	1	0	0	0	0	1	0	0	0	463	893	31	1	95	1	AKNA	9	117099426	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	9719342	117099426	24114005	35	75342										
GATA3	0	genome.wustl.edu	37	chr10	8100449	8100449	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ccggcctcgtcctcctccttGtcggggggccacgccagccc	12	20	0	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	10	8100449	8100449	G	A	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	silent	c.423	p.L141	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	28	0	0	28	5	15.15	-	-	-	A	8100449	G	A	8100449	2	1	937	1	0	0	0	0	0	0	0	1	6305	1368	48	4		4	GATA3	10	8100449	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		8100449	127434298	36	75343										
FRMD4A	0	genome.wustl.edu	37	chr10	13705478	13705478	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcaagaacaagggcatctgaGagggagctgtcttcactggc	13	9	4	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	10	13705478	13705478	G	A	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	silent	c.1635	p.L545	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	66	0	0	59	11	15.71	-	-	-	A	13705478	G	A	13705478	2	1	937	1	0	0	0	0	0	0	0	1	6100	929	33	2		2	FRMD4A	10	13705478	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	5605029	13705478	121829269	37	75344										
APBB1IP	0	genome.wustl.edu	37	chr10	26851337	26851337	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gctgttctccaagaggcccaGagacatgctgaaacatcgaa	10	11	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	10	26851337	26851337	G	A	SNP	APBB1IP	ENST00000376236	human	ensembl	69_37n	1	known	silent	c.1452	p.Q484	0.004	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	53	0	0	44	6	12	-	-	-	A	26851337	G	A	26851337	2	1	937	1	0	0	0	0	0	0	0	1	761	933	33	2		2	APBB1IP	10	26851337	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	13145859	26851337	108683410	38	75345										
OR4A15	0	genome.wustl.edu	37	chr11	55136013	55136013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttattgaaacttgcttgcacCaatacctatgtcactgggct	7	10	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	11	55136013	55136013	C	T	SNP	OR4A15	ENST00000314706	human	ensembl	69_37n	1	known	silent	c.654	p.T218	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4A15	HGNC	ENSG00000181958	120	0	0	35	11	23.91	-	-	-	T	55136013	C	T	55136013	2	4	937	1	0	0	0	0	0	0	0	1	11113	581	21	4		4	OR4A15	11	55136013	Silent	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		55136013	79870503	39	75346										
SART1	0	genome.wustl.edu	37	chr11	65744186	65744186	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tccgaatctgacggggaggaGaacatcggctggagcacggt	16	9	1	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	11	65744186	65744186	G	A	SNP	SART1	ENST00000312397	human	ensembl	69_37n	1	known	silent	c.1806	p.E602	1.000	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	39	0	0	26	4	13.33	-	-	-	A	65744186	G	A	65744186	2	1	937	1	0	0	0	0	0	0	0	1	13933	933	33	2		2	SART1	11	65744186	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	10608173	65744186	69262330	40	75347										
IQSEC3	0	genome.wustl.edu	37	chr12	275032	275032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agtccattgctgaggtgacgGagctggagcagatccgaata	14	8	0	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	12	275032	275032	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	69_37n	1	known	missense	c.2947	p.E983K	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC3	HGNC	ENSG00000120645	66	0	0	54	8	12.9	-	-	-	A	275032	G	A	275032	3	1	937	1	0	0	0	0	1	0	0	0	7873	1175	41	2	2989	2	IQSEC3	12	275032	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		275032	133576863	41	75348										
TENC1	0	genome.wustl.edu	37	chr12	53451451	53451451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tccccatgctgccagcctttGaacctggcacaggtgagtct	10	14	1	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	12	53451451	53451451	G	C	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	missense	c.976	p.E326Q	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	45	0	0	35	6	14.63	-	-	-	C	53451451	G	C	53451451	3	2	937	1	0	0	0	0	1	0	0	0	15853	1291	45	2	1101	2	TENC1	12	53451451	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	53176419	53451451	80400444	42	75349										
SMARCC2	0	genome.wustl.edu	37	chr12	56575305	56575305	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tctttgcttctggggttggtGaaggagagggggagcgcttc	18	6	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	12	56575305	56575305	G	A	SNP	SMARCC2	ENST00000267064	human	ensembl	69_37n	-1	known	missense	c.917	p.S306L	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	58	0	0	45	6	11.76	-	-	-	A	56575305	G	A	56575305	3	1	937	1	0	0	0	0	1	0	0	0	14865	1294	45	2	2900	2	SMARCC2	12	56575305	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	3123854	56575305	77276590	43	75350										
PIWIL1	0	genome.wustl.edu	37	chr12	130834421	130834421	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtataacaataagacatacaGagtggatgatattgactggg	11	4	0	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	12	130834421	130834421	G	C	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.953	p.R318T	1.000	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	54	0	0	43	7	13.73	-	-	-	C	130834421	G	C	130834421	3	2	937	1	0	0	0	0	1	0	0	0	12031	942	33	2	983	2	PIWIL1	12	130834421	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	74259116	130834421	3017474	44	75351										
SACS	0	genome.wustl.edu	37	chr13	23910500	23910500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttggatgcatatctttctaaGgctttgtgtcgctttgggac	11	7	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	13	23910500	23910500	G	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	silent	c.7515	p.A2505	0.959	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	75	0	0	49	7	12.5	-	-	-	A	23910500	G	A	23910500	2	1	937	1	0	0	0	0	0	0	0	1	13890	987	35	4		4	SACS	13	23910500	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		23910500	91259378	45	75352										
MYCBP2	0	genome.wustl.edu	37	chr13	77667317	77667317	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	taccttggtggcatagacttCatattgctctctggctcttc	8	11	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	13	77667317	77667317	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.10350	p.M3450I	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	97	0	0	46	7	13.21	-	-	-	T	77667317	C	T	77667317	3	4	937	1	0	0	0	0	1	0	0	0	10090	826	29	2	3786	2	MYCBP2	13	77667317	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	53756817	77667317	37502561	46	75353										
NRL	0	genome.wustl.edu	37	chr14	24551994	24551994	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agagggttcccgctttacctCaaacttcatcaagtcaaagt	7	11	4	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	14	24551994	24551994	C	G	SNP	NRL	ENST00000396997	human	ensembl	69_37n	-1	known	missense	c.64	p.E22Q	1.000	NULL	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NRL	HGNC	ENSG00000129535	42	0	0	29	4	12.12	-	-	-	G	24551994	C	G	24551994	3	3	937	1	0	0	0	0	1	0	0	0	10729	835	29	2	657	2	NRL	14	24551994	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		24551994	82797546	47	75354										
C14orf37	0	genome.wustl.edu	37	chr14	58471475	58471475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	caaaattcatcttcagagctGtcggctaagagcattactcg	8	10	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	14	58471475	58471475	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	silent	c.2304	p.D768	1.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	65	0	0	49	8	14.04	-	-	-	A	58471475	G	A	58471475	2	1	937	1	0	0	0	0	0	0	0	1	1783	1368	48	4		4	C14orf37	14	58471475	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	33919481	58471475	48878065	48	75355										
MLH3	0	genome.wustl.edu	37	chr14	75515438	75515438	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aattggcactgcacattaatTacatatatgccatagagttc	6	8	0	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	14	75515438	75515438	T	G	SNP	MLH3	ENST00000355774	human	ensembl	69_37n	-1	known	silent	c.921	p.V307	0.008	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_Rsp5_WWP,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684	36	0	0	38	5	11.63	-	-	-	G	75515438	T	G	75515438	2	3	937	1	0	0	0	0	0	0	0	1	9689	1741	61	5		5	MLH3	14	75515438	Silent	SNP	T	TCGA-GM-A2DO-01A-11D-A19Y-09	17043963	75515438	31834102	49	75356										
SPG11	0	genome.wustl.edu	37	chr15	44925744	44925744	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	acaagtgatcaaactgatcaGatacagaagattttgaggat	9	5	2	6			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	15	44925744	44925744	G	C	SNP	SPG11	ENST00000261866	human	ensembl	69_37n	-1	known	missense	c.1694	p.S565C	0.260	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	84	0	0	79	13	14.13	-	-	-	C	44925744	G	C	44925744	3	2	937	1	0	0	0	0	1	0	0	0	15132	942	33	2	5769	2	SPG11	15	44925744	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		44925744	57605648	50	75357										
DUOX1	0	genome.wustl.edu	37	chr15	45433515	45433515	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tctccaagaaggagattgaaGaaatccgaaataccaccctg	8	10	1	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	15	45433515	45433515	G	C	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.1591	p.E531Q	0.948	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	83	0	0	73	12	14.12	-	-	-	C	45433515	G	C	45433515	3	2	937	1	0	0	0	0	1	0	0	0	4835	943	33	2	1641	2	DUOX1	15	45433515	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	507771	45433515	57097877	51	75358										
PTPN9	0	genome.wustl.edu	37	chr15	75762184	75762184	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	cacaatgggtggctcagggcActgccctttggagcgtgctc	14	12	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	15	75762184	75762184	A	C	SNP	PTPN9	ENST00000306726	human	ensembl	69_37n	-1	known	missense	c.1516	p.C506G	0.098	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	48	0	0	53	9	14.52	-	-	-	C	75762184	A	C	75762184	3	2	937	1	0	0	0	0	1	0	0	0	12877	159	6	5	273	5	PTPN9	15	75762184	Missense_Mutation	SNP	A	TCGA-GM-A2DO-01A-11D-A19Y-09	30328669	75762184	26769208	52	75359										
FANCI	0	genome.wustl.edu	37	chr15	89836012	89836012	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aggaggaagaggaggaggaaGaggcattctacgaagaccta	16	5	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	15	89836012	89836012	G	A	SNP	FANCI	ENST00000310775	human	ensembl	69_37n	1	known	missense	c.2086	p.E696K	0.996	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	104	0	0	85	14	14.14	-	-	-	A	89836012	G	A	89836012	3	1	937	1	0	0	0	0	1	0	0	0	5715	943	33	2	2164	2	FANCI	15	89836012	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	14073828	89836012	12695380	53	75360										
SYNM	0	genome.wustl.edu	37	chr15	99671148	99671148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	atcgaggaggaatccaccatCaggtactcttggcaggatga	12	9	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	15	99671148	99671148	C	G	SNP	SYNM	ENST00000336292	human	ensembl	69_37n	1	known	missense	c.2580	p.I860M	1.000	NULL	pfam_F	-	no_errors	SYNM	HGNC	ENSG00000182253	77	0	0	43	5	10.42	-	-	-	G	99671148	C	G	99671148	3	3	937	1	0	0	0	0	1	0	0	0	15547	816	29	2	2596	2	SYNM	15	99671148	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	9835136	99671148	2860244	54	75361										
IGFALS	0	genome.wustl.edu	37	chr16	1841614	1841614	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtgggacaggtccagccatcGcagcgccttcaggcccagga	14	14	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	16	1841614	1841614	G	A	SNP	IGFALS	ENST00000415638	human	ensembl	69_37n	-1	known	nonsense	c.919	p.R307*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769	51	0	0	30	6	16.67	-	-	-	A	1841614	G	A	1841614	4	1	937	1	0	0	0	0	0	1	0	0	7631	1095	38	1	1016	1	IGFALS	16	1841614	Nonsense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		1841614	88513139	55	75362										
PPL	0	genome.wustl.edu	37	chr16	4987026	4987026	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctgtatttgcctttgtttctCttcctgaagagcgagttcat	8	9	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	16	4987026	4987026	C	T	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	silent	c.21	p.K7	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	29	0	0	37	10	21.28	-	-	-	T	4987026	C	T	4987026	2	4	937	1	0	0	0	0	0	0	0	1	12411	912	32	2		2	PPL	16	4987026	Silent	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	3145412	4987026	85367727	56	75363										
MYH11	0	genome.wustl.edu	37	chr16	15931974	15931974	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctccttaatgctggctgcctCgaagccctgcttctccgagg	10	15	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	16	15931974	15931974	C	G	SNP	MYH11	ENST00000396324	human	ensembl	69_37n	-1	known	missense	c.136	p.E46Q	1.000	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392	136	0	0	130	15	10.34	-	-	-	G	15931974	C	G	15931974	3	3	937	1	0	0	0	0	1	0	0	0	10103	893	31	3	6002	3	MYH11	16	15931974	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	10944948	15931974	74422779	57	75364										
BCKDK	0	genome.wustl.edu	37	chr16	31123511	31123511	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gggtctctgcagctgcagtcCctgcagggcattggcacgga	15	12	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	16	31123511	31123511	C	A	SNP	BCKDK	ENST00000219794	human	ensembl	69_37n	1	known	silent	c.1164	p.S388	1.000	pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	pfam_BCDHK/PDK_N,pfam_ATPase-like_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507	45	0	0	38	9	19.15	-	-	-	A	31123511	C	A	31123511	2	1	937	1	0	0	0	0	0	0	0	1	1365	610	22	4		4	BCKDK	16	31123511	Silent	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	15191537	31123511	59231242	58	75365										
CDH1	0	genome.wustl.edu	37	chr16	68845616	68845616	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tgatggaggtcacagccacaGacgcggacgatgatgtgaac	14	9	1	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	16	68845616	68845616	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.862	p.D288N	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	57	0	0	46	7	13.21	-	-	-	A	68845616	G	A	68845616	3	1	937	1	0	0	0	0	1	0	0	0	3124	942	33	2	888	2	CDH1	16	68845616	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	37722105	68845616	21509137	59	75366										
PRPF8	0	genome.wustl.edu	37	chr17	1561836	1561836	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcaccttgtgaatagtcactCtgtagacgttggtgtcatcc	9	10	4	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	1561836	1561836	C	G	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	missense	c.5360	p.R1787T	1.000	pfam_PRP8_domainIV	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	81	0	0	65	12	15.58	-	-	-	G	1561836	C	G	1561836	3	3	937	1	0	0	0	0	1	0	0	0	12656	913	32	2	1691	2	PRPF8	17	1561836	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		1561836	79633374	60	75367										
MYH4	0	genome.wustl.edu	37	chr17	10358364	10358364	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttcatctcgcatttcctctaGagttcccagcaggccagctt	7	14	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	10358364	10358364	G	C	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.2329	p.L777V	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	53	0	0	49	8	14.04	-	-	-	C	10358364	G	C	10358364	3	2	937	1	0	0	0	0	1	0	0	0	10109	933	33	2	3570	2	MYH4	17	10358364	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	8796528	10358364	70836846	61	75368										
ZNF286A	0	genome.wustl.edu	37	chr17	15619791	15619791	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tgtaatgattgtggtgaactCttcacctaccattcagtgct	8	9	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	15619791	15619791	C	G	SNP	ZNF286A	ENST00000413242	human	ensembl	69_37n	1	known	silent	c.753	p.L251	0.561	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC005324.8-001	Clone_based_vega_gene	ENSG00000255104	35	0	0	39	6	13.33	-	-	-	G	15619791	C	G	15619791	2	3	937	1	0	0	0	0	0	0	0	1	17919	900	32	2		2	ZNF286A	17	15619791	Silent	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	5261427	15619791	65575419	62	75369										
ANKFN1	0	genome.wustl.edu	37	chr17	54403701	54403701	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aacttgttcctctgctgcctCgaacagcataaactggtaag	8	11	1	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	54403701	54403701	C	G	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.182	p.S61W	0.974	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	75	0	0	49	13	20.97	-	-	-	G	54403701	C	G	54403701	3	3	937	1	0	0	0	0	1	0	0	0	625	893	31	3	192	3	ANKFN1	17	54403701	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	38783910	54403701	26791509	63	75370										
C17orf80	0	genome.wustl.edu	37	chr17	71232151	71232151	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	agcgtctttactggttggctCaatagaaccttctttgtcaa	8	9	4	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	71232151	71232151	C	T	SNP	C17orf80	ENST00000359042	human	ensembl	69_37n	1	known	missense	c.530	p.S177L	0.514	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219	39	0	0	39	6	13.33	-	-	-	T	71232151	C	T	71232151	3	4	937	1	0	0	0	0	1	0	0	0	1901	838	29	2	532	2	C17orf80	17	71232151	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	16828450	71232151	9963059	64	75371										
GRIN2C	0	genome.wustl.edu	37	chr17	72840607	72840607	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcgttcttctcattctggcaGatccctgagagccacactgt	8	13	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	72840607	72840607	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	69_37n	-1	known	silent	c.2391	p.I797	1.000	pfam_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509	96	0	0	74	12	13.79	-	-	-	A	72840607	G	A	72840607	2	1	937	1	0	0	0	0	0	0	0	1	6832	932	33	2		2	GRIN2C	17	72840607	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	1608456	72840607	8354603	65	75372										
RHBDF2	0	genome.wustl.edu	37	chr17	74470500	74470500	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	atgcatccggagtggtcattCtggacacagcagcctgagtc	12	11	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	74470500	74470500	C	G	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.1506	p.Q502H	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	45	0	0	41	10	19.61	-	-	-	G	74470500	C	G	74470500	3	3	937	1	0	0	0	0	1	0	0	0	13404	912	32	2	1096	2	RHBDF2	17	74470500	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	1629893	74470500	6724710	66	75373										
RNF213	0	genome.wustl.edu	37	chr17	78263574	78263574	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gggaagaacagaagtgcagcTgctgtgaaaaacgagaagga	15	5	0	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	17	78263574	78263574	T	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	1	known	silent	c.1050	p.A350	0.000	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	92	0	0	84	19	18.45	-	-	-	G	78263574	T	G	78263574	2	3	937	1	0	0	0	0	0	0	0	1	13563	1567	55	5		5	RNF213	17	78263574	Silent	SNP	T	TCGA-GM-A2DO-01A-11D-A19Y-09	3793074	78263574	2931636	67	75374										
ANKRD12	0	genome.wustl.edu	37	chr18	9211737	9211737	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gagatgtgaaacaagttaaaGaattaataagtttaggggca	11	2	0	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	18	9211737	9211737	G	A	SNP	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	missense	c.607	p.E203K	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	83	0	0	58	8	12.12	-	-	-	A	9211737	G	A	9211737	3	1	937	1	0	0	0	0	1	0	0	0	640	943	33	2	625	2	ANKRD12	18	9211737	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		9211737	68865511	68	75375										
CEP192	0	genome.wustl.edu	37	chr18	13049027	13049027	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggcactttcaaataaaaccaGagacaagacttttcaggaag	8	8	2	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	18	13049027	13049027	G	C	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	missense	c.2237	p.R746T	0.709	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	33	0	0	29	5	14.71	-	-	-	C	13049027	G	C	13049027	3	2	937	1	0	0	0	0	1	0	0	0	3280	942	33	2	2295	2	CEP192	18	13049027	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	3837290	13049027	65028221	69	75376										
PIK3C3	0	genome.wustl.edu	37	chr18	39576617	39576617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tttagattattgtgagttatCcaccaaccaagcaacttaca	5	9	0	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	18	39576617	39576617	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	missense	c.907	p.P303S	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	63	0	0	43	8	15.69	-	-	-	T	39576617	C	T	39576617	3	4	937	1	0	0	0	0	1	0	0	0	11986	855	30	2	941	2	PIK3C3	18	39576617	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	26527590	39576617	38500631	70	75377										
MYO5B	0	genome.wustl.edu	37	chr18	47563360	47563360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggattaatggcaacaagtacGatacctgcaaacagacaagg	10	8	0	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	18	47563360	47563360	G	C	SNP	MYO5B	ENST00000285039	human	ensembl	69_37n	-1	known	missense	c.315	p.I105M	0.925	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	81	0	0	49	6	10.91	-	-	-	C	47563360	G	C	47563360	3	2	937	1	0	0	0	0	1	0	0	0	10151	1048	37	3	5379	3	MYO5B	18	47563360	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	7986743	47563360	30513888	71	75378										
HMG20B	0	genome.wustl.edu	37	chr19	3574548	3574548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gagatcaccaagatgctgggCgccgagtggagcaagctgca	15	10	1	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	3574548	3574548	C	T	SNP	HMG20B	ENST00000435022	human	ensembl	69_37n	1	known	missense	c.328	p.R110C	0.049	NULL	NULL	-	no_errors	HMG20B	HGNC	ENSG00000064961	12	0	0	9	4	30.77	-	-	-	T	3574548	C	T	3574548	3	4	937	1	0	0	0	0	1	0	0	0	7273	755	27	1	325	1	HMG20B	19	3574548	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		3574548	55554435	72	75379										
PLIN5	0	genome.wustl.edu	37	chr19	4525794	4525794	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gtagccctgctgtctcctctGatcctccaccgaacccactt	6	18	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	4525794	4525794	G	A	SNP	PLIN5	ENST00000381848	human	ensembl	69_37n	-1	known	nonsense	c.571	p.Q191*	1.000	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN5	HGNC	ENSG00000214456	34	0	0	35	5	12.2	-	-	-	A	4525794	G	A	4525794	4	1	937	1	0	0	0	0	0	1	0	0	12167	1299	45	2	832	2	PLIN5	19	4525794	Nonsense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	951246	4525794	54603189	73	75380										
ARHGEF18	0	genome.wustl.edu	37	chr19	7509313	7509313	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gaccggaattatgtcatccaGaaaatcggcgacctcctggt	10	11	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	7509313	7509313	G	A	SNP	ARHGEF18	ENST00000359920	human	ensembl	69_37n	1	known	silent	c.1020	p.Q340	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	48	0	0	49	8	14.04	-	-	-	A	7509313	G	A	7509313	2	1	937	1	0	0	0	0	0	0	0	1	903	933	33	2		2	ARHGEF18	19	7509313	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	2983519	7509313	51619670	74	75381										
ZNF561	0	genome.wustl.edu	37	chr19	9721637	9721637	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	taggtgtgaagaagctgtgaCagctctcccatattcctgaa	10	9	1	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	9721637	9721637	C	G	SNP	ZNF561	ENST00000302851	human	ensembl	69_37n	-1	known	missense	c.700	p.V234L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF561	HGNC	ENSG00000171469	71	0	0	38	5	11.63	-	-	-	G	9721637	C	G	9721637	3	3	937	1	0	0	0	0	1	0	0	0	18088	478	17	4	764	4	ZNF561	19	9721637	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	2212324	9721637	49407346	75	75382										
EPS15L1	0	genome.wustl.edu	37	chr19	16548608	16548608	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggcggtggcatgctcaaattCagattgctcaaggtaacttc	11	9	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	16548608	16548608	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.282	p.L94	0.755	smart_EPS15_homology,pfscan_EPS15_homology	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	77	0	0	44	8	15.38	-	-	-	T	16548608	C	T	16548608	2	4	937	1	0	0	0	0	0	0	0	1	5230	813	29	2		2	EPS15L1	19	16548608	Silent	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	6826971	16548608	42580375	76	75383										
GPATCH1	0	genome.wustl.edu	37	chr19	33587206	33587206	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctaaagataatgtgcatggtCtagcttacaagggcctggat	11	7	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	33587206	33587206	C	G	SNP	GPATCH1	ENST00000170564	human	ensembl	69_37n	1	known	missense	c.706	p.L236V	1.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	56	0	0	71	11	13.25	-	-	-	G	33587206	C	G	33587206	3	3	937	1	0	0	0	0	1	0	0	0	6640	912	32	2	732	2	GPATCH1	19	33587206	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	17038598	33587206	25541777	77	75384										
WDR62	0	genome.wustl.edu	37	chr19	36584985	36584985	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttcactccctgagccctggaGagcaaacagaggatgatctg	11	11	2	4			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	36584985	36584985	G	A	SNP	WDR62	ENST00000401500	human	ensembl	69_37n	1	known	missense	c.2386	p.E796K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702	86	0	0	83	17	17	-	-	-	A	36584985	G	A	36584985	3	1	937	1	0	0	0	0	1	0	0	0	17410	943	33	2	2464	2	WDR62	19	36584985	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	2997779	36584985	22543998	78	75385										
LIG1	0	genome.wustl.edu	37	chr19	48640791	48640791	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ccactcacagcactgccagtGagcctggcgatgtcgcggaa	12	14	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	19	48640791	48640791	G	A	SNP	LIG1	ENST00000542460	human	ensembl	69_37n	-1	known	missense	c.1217	p.S406L	0.838	NULL	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	-	no_errors	LIG1	HGNC	ENSG00000105486	33	0	0	33	8	19.51	-	-	-	A	48640791	G	A	48640791	3	1	937	1	0	0	0	0	1	0	0	0	8836	1277	45	2	1581	2	LIG1	19	48640791	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	12055806	48640791	10488192	79	75386										
RBL1	0	genome.wustl.edu	37	chr20	35693877	35693877	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aggcattctccttttaatatCtgtgaacaaaaaattatttt	4	6	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	20	35693877	35693877	C	G	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	splice_site	c.847-1	e7-1	1.000	-	-	-	no_errors	RBL1	HGNC	ENSG00000080839	58	0	0	46	8	14.81	-	-	-	G	35693877	C	G	35693877	5	3	937	1	0	0	0	0	0	0	1	0	13192	927	32	2	2433	2	RBL1	20	35693877	Splice_Site	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09		35693877	27331643	80	75387										
CHD6	0	genome.wustl.edu	37	chr20	40127968	40127968	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ttagatgccaggatcttctcAatgatgtttgcatcatcttc	7	9	4	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	20	40127968	40127968	A	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.882	p.I294M	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	81	0	0	41	6	12.77	-	-	-	C	40127968	A	C	40127968	3	2	937	1	0	0	0	0	1	0	0	0	3358	126	5	5	7393	5	CHD6	20	40127968	Missense_Mutation	SNP	A	TCGA-GM-A2DO-01A-11D-A19Y-09	4434091	40127968	22897552	81	75388										
ZNF831	0	genome.wustl.edu	37	chr20	57829085	57829085	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctctaccccctggcaaaggtCttgaccttgggttgctggag	12	12	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	20	57829085	57829085	C	G	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	1	novel	missense	c.4321	p.L1441V	0.049	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	30	0	0	32	5	13.51	-	-	-	G	57829085	C	G	57829085	3	3	937	1	0	0	0	0	1	0	0	0	18278	913	32	2	4339	2	ZNF831	20	57829085	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	17701117	57829085	5196435	82	75389										
SS18L1	0	genome.wustl.edu	37	chr20	60733751	60733751	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ctggacgagaaccaccacctGatccagtgcatcctggagta	10	13	0	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	20	60733751	60733751	G	A	SNP	SS18L1	ENST00000331758	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.976	pfam_SSXT	pfam_SSXT	-	no_errors	SS18L1	HGNC	ENSG00000184402	30	0	0	26	6	18.75	-	-	-	A	60733751	G	A	60733751	2	1	937	1	0	0	0	0	0	0	0	1	15267	1277	45	2		2	SS18L1	20	60733751	Silent	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	2904666	60733751	2291769	83	75390										
ACR	0	genome.wustl.edu	37	chr22	51177892	51177892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	tcactgctgctcactgcttcGtcggcaaaaagtacgtgtag	10	11	2	0			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	22	51177892	51177892	G	A	SNP	ACR	ENST00000216139	human	ensembl	69_37n	1	known	missense	c.271	p.V91I	0.002	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Pept_S1A_acrosin,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Pept_S1A_acrosin,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ACR	HGNC	ENSG00000100312	45	0	0	57	11	16.18	-	-	-	A	51177892	G	A	51177892	3	1	937	1	0	0	0	0	1	0	0	0	169	1145	40	1	277	1	ACR	22	51177892	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		51177892	126674	84	75391										
HCCS	0	genome.wustl.edu	37	chrX	11136674	11136674	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	ggatatgtataatatcattaGaattcacaatcagaataacg	6	5	3	2			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	X	11136674	11136674	G	A	SNP	HCCS	ENST00000321143	human	ensembl	69_37n	1	known	missense	c.455	p.R152K	0.002	pfam_Cyt_C/C1_haem_lyase	pfam_Cyt_C/C1_haem_lyase	-	no_errors	HCCS	HGNC	ENSG00000004961	100	0	0	79	17	17.71	-	-	-	A	11136674	G	A	11136674	3	1	937	1	0	0	0	0	1	0	0	0	7041	942	33	2	469	2	HCCS	23	11136674	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09		11136674	144133886	85	75392										
ZXDB	0	genome.wustl.edu	37	chrX	57619607	57619607	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gcgaggagagcttccccacgCaggccaaactcagcgcccac	11	17	1	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	X	57619607	57619607	C	T	SNP	ZXDB	ENST00000374888	human	ensembl	69_37n	1	known	nonsense	c.1126	p.Q376*	0.904	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	116	0	0	105	12	10.26	-	-	-	T	57619607	C	T	57619607	4	4	937	1	0	0	0	0	0	1	0	0	18342	711	25	4	1128	4	ZXDB	23	57619607	Nonsense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	46482933	57619607	97650953	86	75393										
KIF4A	0	genome.wustl.edu	37	chrX	69623811	69623811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	gaagatgctgtttgaggaacGaaatcattttgccgagatag	12	5	1	3			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	X	69623811	69623811	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.2717	p.R906Q	0.997	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	64	0	0	52	10	16.13	-	-	-	A	69623811	G	A	69623811	3	1	937	1	0	0	0	0	1	0	0	0	8355	1058	37	1	2807	1	KIF4A	23	69623811	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	12004204	69623811	85646749	87	75394										
APLN	0	genome.wustl.edu	37	chrX	128782606	128782606	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	aggctcaagtacctgcttcaGaaaggcatgggtcccttatg	11	10	2	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	X	128782606	128782606	G	A	SNP	APLN	ENST00000427399	human	ensembl	69_37n	-1	known	missense	c.119	p.S40F	1.000	NULL	NULL	-	no_errors	APLN	HGNC	ENSG00000171388	29	0	0	16	5	23.81	-	-	-	A	128782606	G	A	128782606	3	1	937	1	0	0	0	0	1	0	0	0	778	933	33	2	6	2	APLN	23	128782606	Missense_Mutation	SNP	G	TCGA-GM-A2DO-01A-11D-A19Y-09	59158795	128782606	26487954	88	75395										
ABCD1	0	genome.wustl.edu	37	chrX	152994737	152994737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.606741573033708	54	8.21856868672485e-21	3.94862971611159	4.47228311932352	3.61043689320388	0.352082163028809	0.953840319784419	40	caggacctggcctcgcagatCaacctcatccttctggaacg	9	15	3	1			TCGA-GM-A2DO-01A-11D-A19Y-09	TCGA-GM-A2DO-10D-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fc563803-d0e6-4b04-86b1-ff00ae342a12	c247eeab-2b71-4019-a24b-d4648fa38deb	X	152994737	152994737	C	G	SNP	ABCD1	ENST00000218104	human	ensembl	69_37n	1	known	missense	c.951	p.I317M	0.990	pfam_ABC_Ald_N,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986	65	0	0	71	14	16.47	-	-	-	G	152994737	C	G	152994737	3	3	937	1	0	0	0	0	1	0	0	0	60	816	29	2	957	2	ABCD1	23	152994737	Missense_Mutation	SNP	C	TCGA-GM-A2DO-01A-11D-A19Y-09	24212131	152994737	2275823	89	75396										
ZBTB40	0	genome.wustl.edu	37	chr1	22848143	22848143	+	Frame_Shift_Del	DEL	A	A	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	caagaagcacatcaaagcagAacatgcaggtggagtttggg							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	22848143	22848143	A	-	DEL	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	frame_shift_del	c.3203	p.E1068fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	37	0	0	8	2	20	-	-	-	-	22848143	A	-	22848143	7	5	938	1	0	1	0	1	0	0	0	0	17638	246	9	0	3257	0	ZBTB40	1	22848143	Frame_Shift_Del	DEL	A	TCGA-GM-A3NW-01A-21D-A228-09		22848143	226402478	1	75397										
TRIM33	0	genome.wustl.edu	37	chr1	115006967	115006967	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	taattatccacaaggtctatCtgtctgcattcttggcggca	8	10	4	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	115006967	115006967	C	A	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	missense	c.570	p.Q190H	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	47	0	0	22	4	15.38	-	-	-	A	115006967	C	A	115006967	3	1	938	1	0	0	0	0	1	0	0	0	16603	912	32	2	2889	2	TRIM33	1	115006967	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	92158824	115006967	134243654	2	75398										
BNIPL	0	genome.wustl.edu	37	chr1	151011415	151011415	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	agtctgcaccttcctctcctGatggcagttctgacctggag	10	13	3	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	151011415	151011415	G	C	SNP	BNIPL	ENST00000368931	human	ensembl	69_37n	1	known	missense	c.346	p.D116H	0.716	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	BNIPL	HGNC	ENSG00000163141	87	0	0	71	24	25	-	-	-	C	151011415	G	C	151011415	3	2	938	1	0	0	0	0	1	0	0	0	1485	1290	45	2	360	2	BNIPL	1	151011415	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	36004448	151011415	98239206	3	75399										
NUP210L	0	genome.wustl.edu	37	chr1	153965335	153965335	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tgccttatactccataaccaAtgttgcagccgactttgggc	8	12	0	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	153965335	153965335	A	T	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.5643	p.H1881Q	0.379	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	61	0	0	47	7	12.96	-	-	-	T	153965335	A	T	153965335	3	4	938	1	0	0	0	0	1	0	0	0	10834	98	4	5	27	5	NUP210L	1	153965335	Missense_Mutation	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09	2953920	153965335	95285286	4	75400										
LYST	0	genome.wustl.edu	37	chr1	235872550	235872550	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cgaggatcattacgcgcccaAgggggaaggttgacgtgatt	15	8	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	235872550	235872550	A	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	silent	c.9984	p.P3328	0.002	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	34	0	0	12	8	40	-	-	-	C	235872550	A	C	235872550	2	2	938	1	0	0	0	0	0	0	0	1	9195	59	3	5		5	LYST	1	235872550	Silent	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09	81907215	235872550	13378071	5	75401										
OR2T8	0	genome.wustl.edu	37	chr1	248084909	248084909	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttcagtcttcgaaaacgccaTgtacatctgctgtgtgttaa	8	9	3	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	1	248084909	248084909	T	G	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	1	known	missense	c.590	p.M197R	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	38	0	0	18	7	28	-	-	-	G	248084909	T	G	248084909	3	3	938	1	0	0	0	0	1	0	0	0	11103	1464	51	5	592	5	OR2T8	1	248084909	Missense_Mutation	SNP	T	TCGA-GM-A3NW-01A-21D-A228-09	12212359	248084909	1165712	6	75402										
PIK3CA	0	genome.wustl.edu	37	chr3	178921551	178921551	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttctttgtgcaacctacgtgAatgtaaatattcgagacatt	7	7	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	3	178921551	178921551	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1033	p.N345H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	49	0	0	25	11	30.56	-	-	-	C	178921551	A	C	178921551	3	2	938	1	0	0	0	0	1	0	0	0	11987	246	9	5	1047	5	PIK3CA	3	178921551	Missense_Mutation	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09		178921551	19100879	7	75403										
RELL1	0	genome.wustl.edu	37	chr4	37651123	37651123	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tgtgcggctgctcccattgtCtacagaaagaaacatgcatg	10	10	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	4	37651123	37651123	C	A	SNP	RELL1	ENST00000314117	human	ensembl	69_37n	-1	known	splice_site	c.89-1	e2-1	0.470	-	-	-	no_errors	RELL1	HGNC	ENSG00000181826	49	0	0	18	10	35.71	-	-	-	A	37651123	C	A	37651123	5	1	938	1	0	0	0	0	0	0	1	0	13301	927	32	2	747	2	RELL1	4	37651123	Splice_Site	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		37651123	153503153	8	75404										
NKX6-1	0	genome.wustl.edu	37	chr4	85416968	85416968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tctcgtgtgttttctcttccCgtctttgtccaacaaaatgg	7	11	3	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	4	85416968	85416968	C	T	SNP	NKX6-1	ENST00000295886	human	ensembl	69_37n	-1	known	missense	c.700	p.G234R	1.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-1	HGNC	ENSG00000163623	69	0	0	34	6	15	-	-	-	T	85416968	C	T	85416968	3	4	938	1	0	0	0	0	1	0	0	0	10529	652	23	1	411	1	NKX6-1	4	85416968	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	47765845	85416968	105737308	9	75405										
GRID2	0	genome.wustl.edu	37	chr4	94137898	94137898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttatcttataggaaataaacGatgtggacgtacaggaactt	9	5	1	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	4	94137898	94137898	G	A	SNP	GRID2	ENST00000282020	human	ensembl	69_37n	1	known	missense	c.799	p.D267N	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208	90	0	0	47	6	11.32	-	-	-	A	94137898	G	A	94137898	3	1	938	1	0	0	0	0	1	0	0	0	6823	1058	37	1	821	1	GRID2	4	94137898	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	8720930	94137898	97016378	10	75406										
C5orf34	0	genome.wustl.edu	37	chr5	43502579	43502579	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gaataaatctctattgagttCatattttgatgggtaagtct	8	4	3	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	43502579	43502579	C	T	SNP	C5orf34	ENST00000306862	human	ensembl	69_37n	-1	known	missense	c.1047	p.M349I	0.018	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244	79	0	0	50	7	12.28	-	-	-	T	43502579	C	T	43502579	3	4	938	1	0	0	0	0	1	0	0	0	2314	826	29	2	901	2	C5orf34	5	43502579	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		43502579	137412681	11	75407										
PPAP2A	0	genome.wustl.edu	37	chr5	54763841	54763841	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttgaatacttggcaatgtcaGtcagggactgactagcagct	11	8	2	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	54763841	54763841	G	C	SNP	PPAP2A	ENST00000264775	human	ensembl	69_37n	-1	known	missense	c.350	p.T117S	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2A	HGNC	ENSG00000067113	50	0	0	19	20	51.28	-	-	-	C	54763841	G	C	54763841	3	2	938	1	0	0	0	0	1	0	0	0	12363	1029	36	4	523	4	PPAP2A	5	54763841	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	11261262	54763841	126151419	12	75408										
MIER3	0	genome.wustl.edu	37	chr5	56231261	56231261	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aaagctttccttacctttctCattaccatcgtactctccaa	2	14	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	56231261	56231261	C	G	SNP	MIER3	ENST00000381199	human	ensembl	69_37n	-1	known	missense	c.589	p.E197Q	1.000	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545	32	0	0	22	4	15.38	-	-	-	G	56231261	C	G	56231261	3	3	938	1	0	0	0	0	1	0	0	0	9653	835	29	2	1088	2	MIER3	5	56231261	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	1467420	56231261	124683999	13	75409										
IQGAP2	0	genome.wustl.edu	37	chr5	75896731	75896731	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggaaagcaacgatcttgtgtCtgtgcagaatcaactcagaa	10	8	4	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	75896731	75896731	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	1	known	missense	c.1166	p.S389F	0.212	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	84	0	0	51	8	13.56	-	-	-	T	75896731	C	T	75896731	3	4	938	1	0	0	0	0	1	0	0	0	7869	913	32	2	1208	2	IQGAP2	5	75896731	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	19665470	75896731	105018529	14	75410										
RASGRF2	0	genome.wustl.edu	37	chr5	80363981	80363981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aagatcaagacacagaaatcGaaaggcttaaatcagaggta	9	6	2	4			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	80363981	80363981	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	1	known	missense	c.526	p.E176K	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	37	0	0	6	7	53.85	-	-	-	A	80363981	G	A	80363981	3	1	938	1	0	0	0	0	1	0	0	0	13156	1059	37	1	536	1	RASGRF2	5	80363981	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	4467250	80363981	100551279	15	75411										
ERAP2	0	genome.wustl.edu	37	chr5	96237327	96237327	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gttcactccgactgcaacagGagcgcttcctccagggggtt	12	13	1	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	96237327	96237327	G	C	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	1	known	missense	c.1690	p.E564Q	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	52	0	0	26	5	16.13	-	-	-	C	96237327	G	C	96237327	3	2	938	1	0	0	0	0	1	0	0	0	5241	1175	41	2	1728	2	ERAP2	5	96237327	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	15873346	96237327	84677933	16	75412										
PCDHGA1	0	genome.wustl.edu	37	chr5	140712490	140712490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttgtgggcgtggacggggttCgggctttcctgcagacctat	16	9	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	140712490	140712490	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	1	known	missense	c.2239	p.R747W	0.065	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	129	0	0	56	17	23.29	-	-	-	T	140712490	C	T	140712490	3	4	938	1	0	0	0	0	1	0	0	0	11623	875	31	1	2241	1	PCDHGA1	5	140712490	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	44475163	140712490	40202770	17	75413										
CDHR2	0	genome.wustl.edu	37	chr5	176008530	176008530	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tgctgacagtgcttgtgtctGactgcggcgagcctgtcctc	13	12	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	176008530	176008530	G	A	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	1	known	missense	c.2005	p.D669N	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	102	0	0	58	8	12.12	-	-	-	A	176008530	G	A	176008530	3	1	938	1	0	0	0	0	1	0	0	0	3148	1290	45	2	2067	2	CDHR2	5	176008530	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	35296040	176008530	4906730	18	75414										
BTNL3	0	genome.wustl.edu	37	chr5	180429703	180429703	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cagccctcaccttggcgcctGgcttctattttactcgggtt	9	14	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	5	180429703	180429703	G	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	1	known	silent	c.705	p.L235	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	100	0	0	18	23	56.1	-	-	-	A	180429703	G	A	180429703	2	1	938	1	0	0	0	0	0	0	0	1	1575	1335	47	4		4	BTNL3	5	180429703	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	4421173	180429703	485557	19	75415										
MYLIP	0	genome.wustl.edu	37	chr6	16143354	16143354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aaaactatggcatagaatggCattctgtgcgggatagcgaa	12	6	1	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	16143354	16143354	C	T	SNP	MYLIP	ENST00000356840	human	ensembl	69_37n	1	known	missense	c.568	p.H190Y	1.000	pfam_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	MYLIP	HGNC	ENSG00000007944	36	0	0	17	10	37.04	-	-	-	T	16143354	C	T	16143354	3	4	938	1	0	0	0	0	1	0	0	0	10127	710	25	4	582	4	MYLIP	6	16143354	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		16143354	154971713	20	75416										
HIST1H2BN	0	genome.wustl.edu	37	chr6	27806549	27806549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	caagcgcagccgcaaggagaGctactccgtgtacgtgtaca	12	12	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	27806549	27806549	G	A	SNP	HIST1H2BN	ENST00000396980	human	ensembl	69_37n	1	known	missense	c.110	p.S37N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BN	HGNC	ENSG00000233822	148	0	0	56	10	15.15	-	-	-	A	27806549	G	A	27806549	3	1	938	1	0	0	0	0	1	0	0	0	7204	971	34	4	112	4	HIST1H2BN	6	27806549	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	11663195	27806549	143308518	21	75417										
MRPS18B	0	genome.wustl.edu	37	chr6	30587369	30587369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atgagccctggaaatatctgGaatcagaaggtacctctaaa	9	8	3	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	30587369	30587369	G	A	SNP	MRPS18B	ENST00000259873	human	ensembl	69_37n	1	known	missense	c.178	p.E60K	1.000	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568	28	0	0	20	4	16.67	-	-	-	A	30587369	G	A	30587369	3	1	938	1	0	0	0	0	1	0	0	0	9901	1175	41	2	184	2	MRPS18B	6	30587369	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	2780820	30587369	140527698	22	75418										
UTRN	0	genome.wustl.edu	37	chr6	144743013	144743013	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atttgtgtttttcttttacaGagtgggaaaccacccatcaa	7	8	2	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	144743013	144743013	G	T	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	splice_site	c.142-1	e3-1	1.000	-	-	-	no_errors	UTRN	HGNC	ENSG00000152818	64	0	0	29	4	12.12	-	-	-	T	144743013	G	T	144743013	5	4	938	1	0	0	0	0	0	0	1	0	17200	956	33	2	151	2	UTRN	6	144743013	Splice_Site	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	114155644	144743013	26372054	23	75419										
RMND1	0	genome.wustl.edu	37	chr6	151757629	151757629	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tccgtgggaggccagatcttGagacagatttcccagatgat	12	9	1	5			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	151757629	151757629	G	C	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	missense	c.565	p.Q189E	1.000	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	38	0	0	20	4	16.67	-	-	-	C	151757629	G	C	151757629	3	2	938	1	0	0	0	0	1	0	0	0	13482	1299	45	2	824	2	RMND1	6	151757629	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	7014616	151757629	19357438	24	75420										
CNKSR3	0	genome.wustl.edu	37	chr6	154771286	154771286	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tcctggtgtccaatccgtgtGacccccagctcctccaggtc	9	17	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	6	154771286	154771286	G	A	SNP	CNKSR3	ENST00000367213	human	ensembl	69_37n	-1	known	silent	c.159	p.V53	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	-	no_errors	CNKSR3	HGNC	ENSG00000153721	67	0	0	17	5	22.73	-	-	-	A	154771286	G	A	154771286	2	1	938	1	0	0	0	0	0	0	0	1	3638	1277	45	2		2	CNKSR3	6	154771286	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	3013657	154771286	16343781	25	75421										
ZNF273	0	genome.wustl.edu	37	chr7	64363752	64363752	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ccgttacctgcaggtattggGagatccacagctaagacgcc	11	12	0	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	7	64363752	64363752	G	C	SNP	ZNF273	ENST00000476120	human	ensembl	69_37n	1	known	silent	c.57	p.G19	0.339	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF273	HGNC	ENSG00000198039	95	0	0	26	8	23.53	-	-	-	C	64363752	G	C	64363752	2	2	938	1	0	0	0	0	0	0	0	1	17904	1161	41	2		2	ZNF273	7	64363752	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		64363752	94774911	26	75422										
ANK1	0	genome.wustl.edu	37	chr8	41573206	41573206	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tgggatgcttccttttccagAagggccaggactgtttccac	11	11	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	41573206	41573206	A	G	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	silent	c.1566	p.L522	0.022	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	109	0	0	64	19	22.89	-	-	-	G	41573206	A	G	41573206	2	3	938	1	0	0	0	0	0	0	0	1	620	233	9	5		5	ANK1	8	41573206	Silent	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09		41573206	104790816	27	75423										
FABP12	0	genome.wustl.edu	37	chr8	82437317	82437317	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gagtttgatgatactttctcGtatgttcgtgtacagataac	9	6	1	3			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	82437317	82437317	G	A	SNP	FABP12	ENST00000360464	human	ensembl	69_37n	-1	known	silent	c.387	p.Y129	0.915	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP12	HGNC	ENSG00000197416	78	0	0	36	14	28	-	-	-	A	82437317	G	A	82437317	2	1	938	1	0	0	0	0	0	0	0	1	5396	1140	40	1		1	FABP12	8	82437317	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	40864111	82437317	63926705	28	75424										
AZIN1	0	genome.wustl.edu	37	chr8	103842054	103842054	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tctgataaaacttgccttgtGaacctctggaatggtattta	8	7	2	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	103842054	103842054	G	A	SNP	AZIN1	ENST00000337198	human	ensembl	69_37n	-1	known	missense	c.1015	p.H339Y	1.000	pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	AZIN1	HGNC	ENSG00000155096	43	0	0	22	3	12	-	-	-	A	103842054	G	A	103842054	3	1	938	1	0	0	0	0	1	0	0	0	1246	1290	45	2	343	2	AZIN1	8	103842054	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	21404737	103842054	42521968	29	75425										
MTBP	0	genome.wustl.edu	37	chr8	121468841	121468843	+	In_Frame_Del	DEL	AGA	AGA	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tctgctaatgttgtatctttAgaagatctcagaaatgttat							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	121468841	121468843	AGA	-	DEL	MTBP	ENST00000305949	human	ensembl	69_37n	1	known	in_frame_del	c.678_680	p.E227in_frame_del	0.999:1.000:0.992	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167	101	0	0	31	22	40.74	-	-	-	-	121468843	AGA	-	121468841	7	5	938	1	0	1	0	1	0	0	0	0	9984	417	15	0	704	0	MTBP	8	121468841	In_Frame_Del	DEL	AGA	TCGA-GM-A3NW-01A-21D-A228-09	17626787	121468841	24895181	30	75426										
TG	0	genome.wustl.edu	37	chr8	133883774	133883774	+	Frame_Shift_Del	DEL	C	C	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atggaggtgtatgggacccgCcagctggggaggccaaagcg							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	133883774	133883774	C	-	DEL	TG	ENST00000220616	human	ensembl	69_37n	1	known	frame_shift_del	c.456	p.Q153fs	0.999	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	67	0	0	15	2	11.76	-	-	-	-	133883774	C	-	133883774	7	5	938	1	0	1	0	1	0	0	0	0	15908	726	26	0	470	0	TG	8	133883774	Frame_Shift_Del	DEL	C	TCGA-GM-A3NW-01A-21D-A228-09	12414933	133883774	12480248	31	75427										
NDRG1	0	genome.wustl.edu	37	chr8	134250811	134250811	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tttgtgaagtgtgtgctgctAcgcgtcttgtttttggcagt	13	6	1	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	8	134250811	134250811	A	T	SNP	NDRG1	ENST00000521414	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDRG1	HGNC	ENSG00000104419	143	1	0.69	35	17	32.69	-	-	-	T	134250811	A	T	134250811	1	4	938	0	1	0	0	0	0	0	0	0	10323	406	14	5		5	NDRG1	8	134250811	RNA	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09	367037	134250811	12113211	32	75428										
FANCG	0	genome.wustl.edu	37	chr9	35077299	35077299	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctgtcaggaggacatccttcAatccctgggcatcctgcagg	11	13	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	9	35077299	35077299	A	G	SNP	FANCG	ENST00000378643	human	ensembl	69_37n	-1	known	missense	c.608	p.L203S	0.854	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	64	0	0	23	5	17.86	-	-	-	G	35077299	A	G	35077299	3	3	938	1	0	0	0	0	1	0	0	0	5714	131	5	5	1300	5	FANCG	9	35077299	Missense_Mutation	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09		35077299	106136132	33	75429										
FAM120A	0	genome.wustl.edu	37	chr9	96214476	96214476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggcggcaacatcgagctcttCgtcttcttcaacggcgcgct	11	14	4	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	9	96214476	96214476	C	A	SNP	FAM120A	ENST00000333936	human	ensembl	69_37n	1	known	missense	c.279	p.F93L	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	19	0	0	11	5	31.25	-	-	-	A	96214476	C	A	96214476	3	1	938	1	0	0	0	0	1	0	0	0	5455	883	31	3	281	3	FAM120A	9	96214476	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	61137177	96214476	44998955	34	75430										
FAM188A	0	genome.wustl.edu	37	chr10	15879305	15879305	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tttaattctggtaaacttctGaacgatctttttctggggga	9	6	4	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	10	15879305	15879305	G	C	SNP	FAM188A	ENST00000277632	human	ensembl	69_37n	-1	known	missense	c.474	p.F158L	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481	25	0	0	13	4	23.53	-	-	-	C	15879305	G	C	15879305	3	2	938	1	0	0	0	0	1	0	0	0	5555	1281	45	2	903	2	FAM188A	10	15879305	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		15879305	119655442	35	75431										
ALOX5	0	genome.wustl.edu	37	chr10	45936008	45936008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gaccatcacccaccttctgcGaacacatctggtgtctgagg	9	14	4	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	10	45936008	45936008	G	A	SNP	ALOX5	ENST00000374391	human	ensembl	69_37n	1	known	missense	c.1112	p.R371Q	1.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX5	HGNC	ENSG00000012779	46	0	0	21	4	16	-	-	-	A	45936008	G	A	45936008	3	1	938	1	0	0	0	0	1	0	0	0	540	1058	37	1	1142	1	ALOX5	10	45936008	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	30056703	45936008	89598739	36	75432										
JMJD1C	0	genome.wustl.edu	37	chr10	64975356	64975356	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tggcacgagacctgcgtcgtGatgtaatgccaatattttca	10	9	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	10	64975356	64975356	G	T	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	nonsense	c.779	p.S260*	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	51	0	0	33	4	10.53	-	-	-	T	64975356	G	T	64975356	4	4	938	1	0	0	0	0	0	1	0	0	8004	1294	45	2	6927	2	JMJD1C	10	64975356	Nonsense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	19039348	64975356	70559391	37	75433										
OR10A5	0	genome.wustl.edu	37	chr11	6867630	6867630	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aaagggaagcataaagccttCtctacgtgctcctcacacct	7	13	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	6867630	6867630	C	G	SNP	OR10A5	ENST00000379831	human	ensembl	69_37n	1	known	missense	c.729	p.F243L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363	107	0	0	41	11	21.15	-	-	-	G	6867630	C	G	6867630	3	3	938	1	0	0	0	0	1	0	0	0	10966	912	32	2	719	2	OR10A5	11	6867630	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		6867630	128138886	38	75434										
CTR9	0	genome.wustl.edu	37	chr11	10794775	10794775	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	attcttatgtttactggtgaGactgaagcaacaaaagagaa	9	5	1	3			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	10794775	10794775	G	A	SNP	CTR9	ENST00000361367	human	ensembl	69_37n	1	known	silent	c.2682	p.E894	0.797	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730	93	0	0	43	11	20.37	-	-	-	A	10794775	G	A	10794775	2	1	938	1	0	0	0	0	0	0	0	1	4056	933	33	2		2	CTR9	11	10794775	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	3927145	10794775	124211741	39	75435										
OR4C16	0	genome.wustl.edu	37	chr11	55340443	55340443	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	acagttggaacatcttttctCaaccctgtgatttacacgct	6	11	2	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	55340443	55340443	C	G	SNP	OR4C16	ENST00000314634	human	ensembl	69_37n	1	known	silent	c.840	p.L280	0.211	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	34	0	0	14	6	30	-	-	-	G	55340443	C	G	55340443	2	3	938	1	0	0	0	0	0	0	0	1	11122	813	29	2		2	OR4C16	11	55340443	Silent	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	44545668	55340443	79666073	40	75436										
AHNAK	0	genome.wustl.edu	37	chr11	62299855	62299855	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	acatcggggcctttaagtttTccccccagaccctccaagtt	7	15	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	62299855	62299855	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	silent	c.2034	p.G678	0.155	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	71	0	0	11	11	50	-	-	-	C	62299855	T	C	62299855	2	2	938	1	0	0	0	0	0	0	0	1	414	1770	62	5		5	AHNAK	11	62299855	Silent	SNP	T	TCGA-GM-A3NW-01A-21D-A228-09	6959412	62299855	72706661	41	75437										
EHBP1L1	0	genome.wustl.edu	37	chr11	65351789	65351789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	accactggctaccgtggcgtCcgcatcaccaacttcaccac	7	18	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	65351789	65351789	C	T	SNP	EHBP1L1	ENST00000533465	human	ensembl	69_37n	1	putative	missense	c.319	p.P107S	0.989	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EHBP1L1	HGNC	ENSG00000173442	38	0	0	11	6	35.29	-	-	-	T	65351789	C	T	65351789	3	4	938	1	0	0	0	0	1	0	0	0	5011	842	30	2	3209	2	EHBP1L1	11	65351789	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	3051934	65351789	69654727	42	75438										
SHANK2	0	genome.wustl.edu	37	chr11	70821019	70821019	+	Frame_Shift_Del	DEL	A	A	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggtcgtggaaattgggatccAggcctcggtccagcatcttg							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	70821019	70821019	A	-	DEL	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	frame_shift_del	c.560	p.L187fs	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	62	0	0	15	2	11.76	-	-	-	-	70821019	A	-	70821019	7	5	938	1	0	1	0	1	0	0	0	0	14354	188	7	0	4963	0	SHANK2	11	70821019	Frame_Shift_Del	DEL	A	TCGA-GM-A3NW-01A-21D-A228-09	5469230	70821019	64185497	43	75439										
GRIK4	0	genome.wustl.edu	37	chr11	120776145	120776145	+	Frame_Shift_Del	DEL	C	C	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctggttggggatggcgtgtaCggcgttcccgaggccaacgg							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	11	120776145	120776145	C	-	DEL	GRIK4	ENST00000527524	human	ensembl	69_37n	1	known	frame_shift_del	c.1419	p.Y473fs	0.153	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	48	0	0	15	2	11.76	-	-	-	-	120776145	C	-	120776145	7	5	938	1	0	1	0	1	0	0	0	0	6827	547	19	0	1461	0	GRIK4	11	120776145	Frame_Shift_Del	DEL	C	TCGA-GM-A3NW-01A-21D-A228-09	49955126	120776145	14230371	44	75440										
TMTC1	0	genome.wustl.edu	37	chr12	29920982	29920982	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctgcatgaaagtagaatgggTtcataccagtcaaaaatatg	9	6	2	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	12	29920982	29920982	T	G	SNP	TMTC1	ENST00000256062	human	ensembl	69_37n	-1	known	missense	c.5	p.N2T	1.000	NULL	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	44	0	0	15	6	28.57	-	-	-	G	29920982	T	G	29920982	3	3	938	1	0	0	0	0	1	0	0	0	16355	1725	60	5	2387	5	TMTC1	12	29920982	Missense_Mutation	SNP	T	TCGA-GM-A3NW-01A-21D-A228-09		29920982	103930913	45	75441										
FAM48A	0	genome.wustl.edu	37	chr13	37621496	37621496	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctcctacctcagcaggtgatCtctgcctggtgccagattag	10	13	2	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	13	37621496	37621496	C	T	SNP	FAM48A	ENST00000470359	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM48A	HGNC	ENSG00000102710	15	0	0	21	4	16	-	-	-	T	37621496	C	T	37621496	1	4	938	0	1	0	0	0	0	0	0	0	5618	928	32	2		2	FAM48A	13	37621496	RNA	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		37621496	77548382	46	75442										
OR4N2	0	genome.wustl.edu	37	chr14	20296298	20296298	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gcatacgagggtcttcttctGaggcaaaaaacaaggccatg	11	9	3	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	20296298	20296298	G	T	SNP	OR4N2	ENST00000315947	human	ensembl	69_37n	1	known	nonsense	c.691	p.E231*	0.532	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	206	2	0.96	91	15	14.15	-	-	-	T	20296298	G	T	20296298	4	4	938	1	0	0	0	0	0	1	0	0	11150	1291	45	2	693	2	OR4N2	14	20296298	Nonsense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		20296298	87053242	47	75443										
PAPLN	0	genome.wustl.edu	37	chr14	73720540	73720540	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cgctccgtgtactgcatctcGtctgacggggccggcatcca	12	15	2	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	73720540	73720540	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	1	known	silent	c.1173	p.S391	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	116	0	0	30	11	26.83	-	-	-	A	73720540	G	A	73720540	2	1	938	1	0	0	0	0	0	0	0	1	11501	1132	40	1		1	PAPLN	14	73720540	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	53424242	73720540	33629000	48	75444										
ENTPD5	0	genome.wustl.edu	37	chr14	74440662	74440662	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctcggtaaacaggcactccgGaaagtgtgcccatcagtccc	10	14	1	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	74440662	74440662	G	C	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.804	p.F268L	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	39	0	0	19	6	24	-	-	-	C	74440662	G	C	74440662	3	2	938	1	0	0	0	0	1	0	0	0	5179	1165	41	2	502	2	ENTPD5	14	74440662	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	720122	74440662	32908878	49	75445										
PGF	0	genome.wustl.edu	37	chr14	75413575	75413575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gaacaacatggggagtgagcGacggggtgggaggaaggagg	22	4	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	75413575	75413575	G	T	SNP	PGF	ENST00000405431	human	ensembl	69_37n	-1	known	missense	c.469	p.R157S	0.000	NULL	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	PGF	HGNC	ENSG00000119630	59	0	0	13	3	18.75	-	-	-	T	75413575	G	T	75413575	3	4	938	1	0	0	0	0	1	0	0	0	11862	1073	37	3		3	PGF	14	75413575	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	972913	75413575	31935965	50	75446										
NRXN3	0	genome.wustl.edu	37	chr14	78709989	78709989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atctcaagtatggaaactcgGagcctcggcttctggggagc	13	10	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	78709989	78709989	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	69_37n	1	known	missense	c.553	p.E185K	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	32	0	0	14	9	39.13	-	-	-	A	78709989	G	A	78709989	3	1	938	1	0	0	0	0	1	0	0	0	10740	1189	41	2		2	NRXN3	14	78709989	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	3296414	78709989	28639551	51	75447										
C14orf142	0	genome.wustl.edu	37	chr14	93673347	93673347	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	acccgcagcttctgcggcttCccttcctgcccgacgtactc	8	19	1	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	93673347	93673347	C	G	SNP	C14orf142	ENST00000556566	human	ensembl	69_37n	-1	putative	missense	c.28	p.E10Q	0.956	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C14orf142	HGNC	ENSG00000170270	126	0	0	36	5	12.2	-	-	-	G	93673347	C	G	93673347	3	3	938	1	0	0	0	0	1	0	0	0	1759	842	30	2	274	2	C14orf142	14	93673347	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	14963358	93673347	13676193	52	75448										
AKT1	0	genome.wustl.edu	37	chr14	105258971	105258971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	accctccttcacaatagccaCgtcgctcatggtgcccgagg	9	16	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	14	105258971	105258971	C	G	SNP	AKT1	ENST00000349310	human	ensembl	69_37n	-1	known	missense	c.10	p.V4L	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT1	HGNC	ENSG00000142208	74	0	0	30	11	26.83	-	-	-	G	105258971	C	G	105258971	3	3	938	1	0	0	0	0	1	0	0	0	478	536	19	3	1484	3	AKT1	14	105258971	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	11585624	105258971	2090569	53	75449										
CTDSPL2	0	genome.wustl.edu	37	chr15	44751303	44751303	+	Frame_Shift_Del	DEL	G	G	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	agaggaaatattcagaggttGatgatagcctgccttcagga							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	15	44751303	44751303	G	-	DEL	CTDSPL2	ENST00000260327	human	ensembl	69_37n	1	known	frame_shift_del	c.91	p.D31fs	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL2	HGNC	ENSG00000137770	31	0	0	4	2	33.33	-	-	-	-	44751303	G	-	44751303	7	5	938	1	0	1	0	1	0	0	0	0	4038	1290	45	0	93	0	CTDSPL2	15	44751303	Frame_Shift_Del	DEL	G	TCGA-GM-A3NW-01A-21D-A228-09		44751303	57780089	54	75450										
WDR72	0	genome.wustl.edu	37	chr15	54003115	54003115	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aaatggtctctttaagcactCttccatcagcagggtatatg	8	9	3	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	15	54003115	54003115	C	G	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	missense	c.893	p.R298T	0.310	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	59	0	0	22	7	24.14	-	-	-	G	54003115	C	G	54003115	3	3	938	1	0	0	0	0	1	0	0	0	17419	913	32	2	2463	2	WDR72	15	54003115	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	9251812	54003115	48528277	55	75451										
DNASE1L2	0	genome.wustl.edu	37	chr16	2288404	2288404	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tttccagtggaggtgaccctCaagttccaccgatgactcga	10	12	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	16	2288404	2288404	C	G	SNP	DNASE1L2	ENST00000320700	human	ensembl	69_37n	1	known	silent	c.885	p.L295	0.998	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I_euk,pirsf_DNase_I_euk,prints_DNase_I_euk	-	no_errors	DNASE1L2	HGNC	ENSG00000167968	63	0	0	20	9	31.03	-	-	-	G	2288404	C	G	2288404	2	3	938	1	0	0	0	0	0	0	0	1	4697	813	29	2		2	DNASE1L2	16	2288404	Silent	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		2288404	88066349	56	75452										
CDR2	0	genome.wustl.edu	37	chr16	22359004	22359004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	attcctcctccatagtcaccCgcttctgccgctccaggctc	6	19	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	16	22359004	22359004	C	T	SNP	CDR2	ENST00000268383	human	ensembl	69_37n	-1	known	missense	c.647	p.R216Q	1.000	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743	106	0	0	24	16	40	-	-	-	T	22359004	C	T	22359004	3	4	938	1	0	0	0	0	1	0	0	0	3201	652	23	1	721	1	CDR2	16	22359004	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	20070600	22359004	67995749	57	75453										
BCL6B	0	genome.wustl.edu	37	chr17	6930108	6930108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gcacagccgcatccattcggGagagaagccgtataagtgtg	13	10	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	17	6930108	6930108	G	T	SNP	BCL6B	ENST00000293805	human	ensembl	69_37n	1	known	missense	c.1139	p.G380V	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940	36	0	0	17	7	29.17	-	-	-	T	6930108	G	T	6930108	3	4	938	1	0	0	0	0	1	0	0	0	1381	1174	41	2	1161	2	BCL6B	17	6930108	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		6930108	74265102	58	75454										
FXR2	0	genome.wustl.edu	37	chr17	7496081	7496081	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	catgacggtcctgtcttcatCagtgcggcggcggcgggagc	16	12	3	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	17	7496081	7496081	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	missense	c.1660	p.D554N	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	51	0	0	15	9	37.5	-	-	-	T	7496081	C	T	7496081	3	4	938	1	0	0	0	0	1	0	0	0	6165	826	29	2	277	2	FXR2	17	7496081	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	565973	7496081	73699129	59	75455										
KRT23	0	genome.wustl.edu	37	chr17	39092673	39092673	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	agtagggggctgcttcttccAgaaccccaagaccctccagg	11	14	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	17	39092673	39092673	A	T	SNP	KRT23	ENST00000209718	human	ensembl	69_37n	-1	known	silent	c.183	p.S61	0.000	NULL	pfam_F,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244	81	0	0	27	16	37.21	-	-	-	T	39092673	A	T	39092673	2	4	938	1	0	0	0	0	0	0	0	1	8513	175	7	5		5	KRT23	17	39092673	Silent	SNP	A	TCGA-GM-A3NW-01A-21D-A228-09	31596592	39092673	42102537	60	75456										
KRT19	0	genome.wustl.edu	37	chr17	39680234	39680234	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ctccgtttctgccagtgtgtCttccaaggcagctttctgag	10	12	3	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	17	39680234	39680234	C	G	SNP	KRT19	ENST00000361566	human	ensembl	69_37n	-1	known	missense	c.964	p.D322H	0.995	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345	39	0	0	23	4	14.81	-	-	-	G	39680234	C	G	39680234	3	3	938	1	0	0	0	0	1	0	0	0	8509	913	32	2	242	2	KRT19	17	39680234	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	587561	39680234	41514976	61	75457										
DGKE	0	genome.wustl.edu	37	chr17	54912561	54912561	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cggggcaacgtgcccctgtgCagttactgtatggtttgcaa	13	10	0	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	17	54912561	54912561	C	A	SNP	DGKE	ENST00000284061	human	ensembl	69_37n	1	known	nonsense	c.405	p.C135*	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933	62	0	0	34	4	10.53	-	-	-	A	54912561	C	A	54912561	4	1	938	1	0	0	0	0	0	1	0	0	4504	718	25	4	407	4	DGKE	17	54912561	Nonsense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	15232327	54912561	26282649	62	75458										
L3MBTL4	0	genome.wustl.edu	37	chr18	6241437	6241437	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atccatccaaacaaatttatCttttctataacctaaaaaaa	0	9	2	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	18	6241437	6241437	C	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	missense	c.472	p.D158H	1.000	pfam_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	68	0	0	38	9	19.15	-	-	-	G	6241437	C	G	6241437	3	3	938	1	0	0	0	0	1	0	0	0	8648	913	32	2	1451	2	L3MBTL4	18	6241437	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		6241437	71835811	63	75459										
KLHL14	0	genome.wustl.edu	37	chr18	30314187	30314187	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttgcactttcctgcttccctGaaatggggtgtggtcctgtg	12	10	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	18	30314187	30314187	G	A	SNP	KLHL14	ENST00000358095	human	ensembl	69_37n	-1	known	missense	c.1091	p.S364L	0.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	105	0	0	29	6	17.14	-	-	-	A	30314187	G	A	30314187	3	1	938	1	0	0	0	0	1	0	0	0	8423	1305	45	2		2	KLHL14	18	30314187	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	24072750	30314187	47763061	64	75460										
TCF4	0	genome.wustl.edu	37	chr18	53128339	53128339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggtcatagggagtcccatctCcatagttctgtaaataaaat	8	8	3	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	18	53128339	53128339	C	G	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.521	p.G174A	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	47	0	0	14	9	39.13	-	-	-	G	53128339	C	G	53128339	3	3	938	1	0	0	0	0	1	0	0	0	15790	855	30	2	1860	2	TCF4	18	53128339	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	22814152	53128339	24948909	65	75461										
PIGN	0	genome.wustl.edu	37	chr18	59770085	59770085	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tatcttttcttttcatgagaGatgttacaacacacagggat	7	7	3	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	18	59770085	59770085	G	A	SNP	PIGN	ENST00000357637	human	ensembl	69_37n	-1	known	missense	c.1910	p.S637F	0.005	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563	43	0	0	18	6	25	-	-	-	A	59770085	G	A	59770085	3	1	938	1	0	0	0	0	1	0	0	0	11967	942	33	2	929	2	PIGN	18	59770085	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	6641746	59770085	18307163	66	75462										
HMHA1	0	genome.wustl.edu	37	chr19	1084313	1084313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gggcgaggcggtggtctaccCgctgcaggaggcggcggcgg	22	11	1	0			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	1084313	1084313	C	T	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	1	known	missense	c.3032	p.P1011L	0.005	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	132	0	0	45	12	21.05	-	-	-	T	1084313	C	T	1084313	3	4	938	1	0	0	0	0	1	0	0	0	7291	652	23	1	3118	1	HMHA1	19	1084313	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		1084313	58044670	67	75463										
SAFB2	0	genome.wustl.edu	37	chr19	5604869	5604869	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	gatgcacttggtcgcctcgtCagatgtcgacatggtgacga	13	10	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	5604869	5604869	C	T	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.1375	p.D459N	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	37	0	0	16	8	33.33	-	-	-	T	5604869	C	T	5604869	3	4	938	1	0	0	0	0	1	0	0	0	13893	826	29	2	1534	2	SAFB2	19	5604869	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	4520556	5604869	53524114	68	75464										
PNPLA6	0	genome.wustl.edu	37	chr19	7601418	7601418	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	aggaagaaactgaagatgctCaacattgccaagaagtaagg	11	6	1	4			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	7601418	7601418	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	69_37n	1	known	silent	c.426	p.L142	0.912	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	64	0	0	14	8	36.36	-	-	-	T	7601418	C	T	7601418	2	4	938	1	0	0	0	0	0	0	0	1	12243	813	29	2		2	PNPLA6	19	7601418	Silent	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	1996549	7601418	51527565	69	75465										
MUC16	0	genome.wustl.edu	37	chr19	9091148	9091148	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tgatgggtttgtccttcctgGagtatgtgagtcagtaactg	13	6	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	9091148	9091148	G	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.667	p.P223A	0.024	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	80	0	0	35	13	27.08	-	-	-	C	9091148	G	C	9091148	3	2	938	1	0	0	0	0	1	0	0	0	10045	1174	41	2	43192	2	MUC16	19	9091148	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	1489730	9091148	50037835	70	75466										
RAB4B	0	genome.wustl.edu	37	chr19	41285991	41285991	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tcatgtctccttcatcagttCattgagaataagtgtgagtt	8	7	5	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	41285991	41285991	C	T	SNP	RAB4B	ENST00000357052	human	ensembl	69_37n	1	known	silent	c.84	p.F28	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4B	HGNC	ENSG00000167578	141	0	0	76	12	13.48	-	-	-	T	41285991	C	T	41285991	2	4	938	1	0	0	0	0	0	0	0	1	13030	825	29	2		2	RAB4B	19	41285991	Silent	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	32194843	41285991	17842992	71	75467										
LAIR2	0	genome.wustl.edu	37	chr19	55019380	55019380	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	tggtctgagcacagtgacttCctggagctgctggtgaaagg	15	8	1	3			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	19	55019380	55019380	C	T	SNP	LAIR2	ENST00000301202	human	ensembl	69_37n	1	known	silent	c.345	p.F115	0.004	smart_Ig_sub	smart_Ig_sub	-	no_errors	LAIR2	HGNC	ENSG00000167618	64	0	0	24	8	25	-	-	-	T	55019380	C	T	55019380	2	4	938	1	0	0	0	0	0	0	0	1	8657	854	30	2		2	LAIR2	19	55019380	Silent	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09	13733389	55019380	4109603	72	75468										
C20orf26	0	genome.wustl.edu	37	chr20	20050397	20050397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cttcttgcttagattttctcGttcttgtctgcactgacagt	7	10	4	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	20	20050397	20050397	G	A	SNP	C20orf26	ENST00000494029	human	ensembl	69_37n	1	known	missense	c.152	p.R51H	0.000	NULL	NULL	-	no_errors	C20orf26	HGNC	ENSG00000089101	80	0	0	21	4	16	-	-	-	A	20050397	G	A	20050397	3	1	938	1	0	0	0	0	1	0	0	0	2126	1160	40	1		1	C20orf26	20	20050397	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		20050397	42975123	73	75469										
PACSIN2	0	genome.wustl.edu	37	chr22	43287091	43287091	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	atcttctcgaagtcatcgttCatcagtgaggccttcacctc	7	13	6	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	22	43287091	43287091	C	G	SNP	PACSIN2	ENST00000263246	human	ensembl	69_37n	-1	known	missense	c.315	p.M105I	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266	108	0	0	41	9	18	-	-	-	G	43287091	C	G	43287091	3	3	938	1	0	0	0	0	1	0	0	0	11448	826	29	2	1177	2	PACSIN2	22	43287091	Missense_Mutation	SNP	C	TCGA-GM-A3NW-01A-21D-A228-09		43287091	8017475	74	75470										
KCND1	0	genome.wustl.edu	37	chrX	48826174	48826174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggcccgccagagccgctgccGcagggagctgcctgctggca	16	16	0	1			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	X	48826174	48826174	G	A	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.505	p.R169W	0.939	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	36	0	0	12	4	25	-	-	-	A	48826174	G	A	48826174	3	1	938	1	0	0	0	0	1	0	0	0	8072	1086	38	1	1462	1	KCND1	23	48826174	Missense_Mutation	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09		48826174	106444386	75	75471										
IQSEC2	0	genome.wustl.edu	37	chrX	53280197	53280197	+	Frame_Shift_Del	DEL	C	C	-													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ttgttggggaactgtgtcatCcaggtagaggggaagatcac							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	X	53280197	53280197	C	-	DEL	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	frame_shift_del	c.1561	p.D521fs	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	25	0	0	6	2	25	-	-	-	-	53280197	C	-	53280197	7	5	938	1	0	1	0	1	0	0	0	0	7872	855	30	0	2949	0	IQSEC2	23	53280197	Frame_Shift_Del	DEL	C	TCGA-GM-A3NW-01A-21D-A228-09	4454023	53280197	101990363	76	75472										
AR	0	genome.wustl.edu	37	chrX	66765158	66765159	+	In_Frame_Ins	INS	-	-	GCA													0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	ggcgccagtttgctgctgctINSgcagcagcagcagcagcagc							TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	X	66765158	66765159	-	GCA	INS	AR	ENST00000374690	human	ensembl	69_37n	1	known	in_frame_ins	c.170_171	p.61in_frame_insQ	0.929:0.925	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	47	0	0	28	5	15.15	-	-	-	GCA	66765159	-	GCA	66765158	7	5	938	1	0	1	1	0	0	0	0	0	838	1580	55	0	172	0	AR	23	66765158	In_Frame_Ins	INS	-	TCGA-GM-A3NW-01A-21D-A228-09	13484961	66765158	88505402	77	75473										
ATP2B3	0	genome.wustl.edu	37	chrX	152818568	152818568	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.320512820512821	25	1.54065483799625e-07	3.36834733893557	3.9781954887218	3.00625	0.600950466520637	1	18	cgggacgacatggtgaggaaGatcatcgagccgatggcttg	16	8	1	2			TCGA-GM-A3NW-01A-21D-A228-09	TCGA-GM-A3NW-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b7ba9ef1-b3c6-45a1-a059-5aea15561d95	70a26034-3902-4c3c-b9bb-40720ae1bb73	X	152818568	152818568	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	1	known	silent	c.1899	p.K633	1.000	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	46	0	0	29	7	19.44	-	-	-	A	152818568	G	A	152818568	2	1	938	1	0	0	0	0	0	0	0	1	1145	933	33	2		2	ATP2B3	23	152818568	Silent	SNP	G	TCGA-GM-A3NW-01A-21D-A228-09	86053410	152818568	2451992	78	75474										
TNFRSF14	0	genome.wustl.edu	37	chr1	2494785	2494785	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aagaggctgtccacctggcgGaaccaccggagcccggaggc	15	14	0	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	2494785	2494785	G	A	SNP	TNFRSF14	ENST00000480305	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TNFRSF14	HGNC	ENSG00000157873	17	0	0	12	4	25	-	-	-	A	2494785	G	A	2494785	1	1	939	0	1	0	0	0	0	0	0	0	16384	1189	41	2		2	TNFRSF14	1	2494785	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		2494785	246755836	1	75475										
C1orf174	0	genome.wustl.edu	37	chr1	3807204	3807204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gctgtcgtcatctagaaagaCgctgttgtccatctgaagtg	11	9	3	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	3807204	3807204	C	T	SNP	C1orf174	ENST00000361605	human	ensembl	69_37n	-1	known	missense	c.547	p.V183I	0.000	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912	58	0	0	36	13	26.53	-	-	-	T	3807204	C	T	3807204	3	4	939	1	0	0	0	0	1	0	0	0	2034	536	19	1	192	1	C1orf174	1	3807204	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	1312419	3807204	245443417	2	75476										
FNDC5	0	genome.wustl.edu	37	chr1	33328165	33328165	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ggaaggaaggggcggtcattGggtgatggcttctggctctc	18	7	3	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	33328165	33328165	G	A	SNP	FNDC5	ENST00000481487	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	FNDC5	HGNC	ENSG00000160097	140	0	0	82	12	12.63	-	-	-	A	33328165	G	A	33328165	1	1	939	0	1	0	0	0	0	0	0	0	6018	1363	47	4		4	FNDC5	1	33328165	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	29520961	33328165	215922456	3	75477										
PHC2	0	genome.wustl.edu	37	chr1	33789520	33789520	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cagctgttctttccccttagCagttctctgagcctcaccac	6	16	3	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	33789520	33789520	C	A	SNP	PHC2	ENST00000485928	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHC2	HGNC	ENSG00000134686	18	0	0	2	4	66.67	-	-	-	A	33789520	C	A	33789520	1	1	939	0	1	0	0	0	0	0	0	0	11891	725	25	4		4	PHC2	1	33789520	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	461355	33789520	215461101	4	75478										
C1orf109	0	genome.wustl.edu	37	chr1	38148123	38148123	+	RNA	SNP	T	T	G													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gctttggccaaaaaaactccTgtcattttaggagtctcacc							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	38148123	38148123	T	G	SNP	C1orf109	ENST00000494120	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922	46	0	0	27	4	12.9	-	-	-	G	38148123	T	G	38148123	1	3	939	0	1	0	0	0	0	0	0	0	2001	1595	55	5		5	C1orf109	1	38148123	RNA	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	4358603	38148123	211102498	5	75479	525	2								
C1orf109	0	genome.wustl.edu	37	chr1	38148124	38148124	+	RNA	SNP	G	G	A													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctttggccaaaaaaactcctGtcattttaggagtctcacca							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	38148124	38148124	G	A	SNP	C1orf109	ENST00000494120	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922	45	0	0	27	4	12.9	-	-	-	A	38148124	G	A	38148124	1	1	939	0	1	0	0	0	0	0	0	0	2001	1392	48	4		4	C1orf109	1	38148124	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	1	38148124	211102497	6	75480	525	2								
MAST2	0	genome.wustl.edu	37	chr1	46495024	46495024	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cccaggcaaggctttcagggGctccaggctgggtccttttt	13	12	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	46495024	46495024	G	A	SNP	MAST2	ENST00000477968	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAST2	HGNC	ENSG00000086015	39	0	0	21	6	22.22	-	-	-	A	46495024	G	A	46495024	1	1	939	0	1	0	0	0	0	0	0	0	9396	1218	42	4		4	MAST2	1	46495024	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	8346900	46495024	202755597	7	75481										
POMGNT1	0	genome.wustl.edu	37	chr1	46657651	46657651	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aaactgaggcaaaaataggaTagctctttccccaaggttac	8	9	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	46657651	46657651	T	C	SNP	POMGNT1	ENST00000463030	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998	47	0	0	36	4	10	-	-	-	C	46657651	T	C	46657651	1	2	939	0	1	0	0	0	0	0	0	0	12317	1421	49	5		5	POMGNT1	1	46657651	RNA	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	162627	46657651	202592970	8	75482										
GSTM2	0	genome.wustl.edu	37	chr1	110212293	110212293	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttgattccttctggtgagttCttggtcttgctgactctaag	10	8	4	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	110212293	110212293	C	A	SNP	GSTM2	ENST00000464206	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.456	-	-	-	no_errors	GSTM2	HGNC	ENSG00000213366	14	0	0	12	5	29.41	-	-	-	A	110212293	C	A	110212293	1	1	939	0	1	0	0	0	0	0	0	0	6889	928	32	2		2	GSTM2	1	110212293	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	63554642	110212293	139038328	9	75483										
PDE4DIP	0	genome.wustl.edu	37	chr1	145039922	145039922	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gagccagcggctgcccgggcGgcggtgcgcgcactctccag	17	16	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	145039922	145039922	G	C	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	10	0	0	13	4	23.53	-	-	-	C	145039922	G	C	145039922	1	2	939	0	1	0	0	0	0	0	0	0	11716	1131	39	3		3	PDE4DIP	1	145039922	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	34827629	145039922	104210699	10	75484										
NTRK1	0	genome.wustl.edu	37	chr1	156836739	156836739	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctctggagtctctctcctggAaaactgtgcagggcctctcc	10	14	4	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	156836739	156836739	A	G	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.397	p.K133E	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	97	0	0	104	17	14.05	-	-	-	G	156836739	A	G	156836739	3	3	939	1	0	0	0	0	1	0	0	0	10779	247	9	5	541	5	NTRK1	1	156836739	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09	11796817	156836739	92413882	11	75485										
MGST3	0	genome.wustl.edu	37	chr1	165630698	165630698	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gtttggcttccctgggccacActggaagaagaagaattgtc	12	9	0	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	165630698	165630698	A	G	SNP	MGST3	ENST00000367888	human	ensembl	69_37n	1	putative	missense	c.355	p.T119A	0.136	NULL	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198	75	0	0	61	7	10.29	-	-	-	G	165630698	A	G	165630698	3	3	939	1	0	0	0	0	1	0	0	0	9633	174	6	5		5	MGST3	1	165630698	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09	8793959	165630698	83619923	12	75486										
HMCN1	0	genome.wustl.edu	37	chr1	186023072	186023072	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctctattcatgtgtggcgtcGaatgttgctgggactgcaaa	12	8	2	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	186023072	186023072	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	silent	c.6816	p.S2272	0.276	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	132	0	0	108	28	20.44	-	-	-	A	186023072	G	A	186023072	2	1	939	1	0	0	0	0	0	0	0	1	7271	1045	37	1		1	HMCN1	1	186023072	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	20392374	186023072	63227549	13	75487										
CYB5R1	0	genome.wustl.edu	37	chr1	202936400	202936400	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	caatgcgccgcggggcgggtCggagggcggggcaggccggg	24	11	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	202936400	202936400	C	T	SNP	CYB5R1	ENST00000473599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	51	0	0	18	5	21.74	-	-	-	T	202936400	C	T	202936400	1	4	939	0	1	0	0	0	0	0	0	0	4157	899	31	1		1	CYB5R1	1	202936400	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	16913328	202936400	46314221	14	75488										
PCNXL2	0	genome.wustl.edu	37	chr1	233394471	233394471	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gagtttggggtactgctcatCgtgataacaatttttatggg	12	5	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	233394471	233394471	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	silent	c.1137	p.T379	0.780	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	94	0	0	66	19	22.09	-	-	-	T	233394471	C	T	233394471	2	4	939	1	0	0	0	0	0	0	0	1	11665	871	31	1		1	PCNXL2	1	233394471	Silent	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	30458071	233394471	15856150	15	75489										
GPR137B	0	genome.wustl.edu	37	chr1	236385165	236385165	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	acattttaataaaaagcttgGactcagtggaaaaaataaag	7	4	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	236385165	236385165	G	C	SNP	GPR137B	ENST00000477559	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GPR137B	HGNC	ENSG00000077585	32	0	0	40	5	11.11	-	-	-	C	236385165	G	C	236385165	1	2	939	0	1	0	0	0	0	0	0	0	6696	1189	41	2		2	GPR137B	1	236385165	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	2990694	236385165	12865456	16	75490										
C1orf101	0	genome.wustl.edu	37	chr1	244773862	244773862	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cactgctgtaaatatgtgttTgcagattattaaatatgtgt	8	4	0	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	244773862	244773862	T	C	SNP	C1orf101	ENST00000473875	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	C1orf101	HGNC	ENSG00000179397	93	0	0	68	8	10.53	-	-	-	C	244773862	T	C	244773862	1	2	939	0	1	0	0	0	0	0	0	0	1995	1827	63	5		5	C1orf101	1	244773862	RNA	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	8388697	244773862	4476759	17	75491										
ADCY3	0	genome.wustl.edu	37	chr2	25141736	25141736	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	caggcaggagcccgagttccGgaccgagatttcatgggtcc	14	12	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	25141736	25141736	G	T	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	silent	c.121	p.R41	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	38	0	0	29	4	11.76	-	-	-	T	25141736	G	T	25141736	2	4	939	1	0	0	0	0	0	0	0	1	295	1115	39	3		3	ADCY3	2	25141736	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		25141736	218057637	18	75492										
SPRED2	0	genome.wustl.edu	37	chr2	65561392	65561392	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgggcccgccagaatccattCtctacttctgagccaagaca	8	14	2	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	65561392	65561392	C	T	SNP	SPRED2	ENST00000426832	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	0.254	NULL	pfam_EVH1,pfscan_EVH1	-	no_start_codon	SPRED2	HGNC	ENSG00000198369	25	0	0	29	6	17.14	-	-	-	T	65561392	C	T	65561392	2	4	939	1	0	0	0	0	0	0	0	1	15184	928	32	2		2	SPRED2	2	65561392	Silent	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	40419656	65561392	177637981	19	75493										
ARHGAP25	0	genome.wustl.edu	37	chr2	69002760	69002760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tcctccaggaagcaccaggaCgggcactgtggagtttccta	12	12	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	69002760	69002760	C	T	SNP	ARHGAP25	ENST00000473986	human	ensembl	69_37n	1	known	missense	c.200	p.T67M	0.000	NULL	NULL	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	62	0	0	39	5	11.11	-	-	-	T	69002760	C	T	69002760	3	4	939	1	0	0	0	0	1	0	0	0	876	551	19	1		1	ARHGAP25	2	69002760	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	3441368	69002760	174196613	20	75494										
THNSL2	0	genome.wustl.edu	37	chr2	88482535	88482535	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	agccaggtgacaagagccctCatggagcagtttgaaaggac	13	9	1	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	88482535	88482535	C	T	SNP	THNSL2	ENST00000324166	human	ensembl	69_37n	1	known	silent	c.1020	p.L340	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	95	0	0	31	13	29.55	-	-	-	T	88482535	C	T	88482535	2	4	939	1	0	0	0	0	0	0	0	1	15958	813	29	2		2	THNSL2	2	88482535	Silent	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	19479775	88482535	154716838	21	75495										
CKAP2L	0	genome.wustl.edu	37	chr2	113513758	113513758	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	taccactggttccatttggtCttatgctaggggtgcttgga	12	8	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	113513758	113513758	C	G	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.1190	p.R397T	0.001	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	137	0	0	69	28	28.87	-	-	-	G	113513758	C	G	113513758	3	3	939	1	0	0	0	0	1	0	0	0	3473	913	32	2	1071	2	CKAP2L	2	113513758	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	25031223	113513758	129685615	22	75496										
SLC35F5	0	genome.wustl.edu	37	chr2	114483094	114483094	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	acctggccataagagcagcaGattaaacaaacctacaaaac	6	11	0	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	114483094	114483094	G	T	SNP	SLC35F5	ENST00000245680	human	ensembl	69_37n	-1	known	missense	c.1111	p.L371M	1.000	NULL	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084	35	0	0	30	4	11.76	-	-	-	T	114483094	G	T	114483094	3	4	939	1	0	0	0	0	1	0	0	0	14681	933	33	2	476	2	SLC35F5	2	114483094	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	969336	114483094	128716279	23	75497										
ACVR2A	0	genome.wustl.edu	37	chr2	148657136	148657136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cggagatggaagtcacacagCgtaagttcacagggaaaata	12	7	2	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	148657136	148657136	C	T	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	1	known	missense	c.373	p.P125S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	120	0	0	39	15	27.78	-	-	-	T	148657136	C	T	148657136	3	4	939	1	0	0	0	0	1	0	0	0	223	782	27	1	383	1	ACVR2A	2	148657136	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	34174042	148657136	94542237	24	75498										
LRP2	0	genome.wustl.edu	37	chr2	170115633	170115633	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctcatgacactgatactcttGtaatgagagtctgtccaata	7	9	3	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	170115633	170115633	G	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	nonsense	c.2415	p.Y805*	0.250	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	70	0	0	31	5	13.51	-	-	-	T	170115633	G	T	170115633	4	4	939	1	0	0	0	0	0	1	0	0	9022	1372	48	4	11804	4	LRP2	2	170115633	Nonsense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	21458497	170115633	73083740	25	75499										
IDH1	0	genome.wustl.edu	37	chr2	209108313	209108313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cttgattatacatccccatgGcaacaccaccaccttctgta	4	15	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	209108313	209108313	G	T	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.536	p.A179D	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	40	0	0	24	5	17.24	-	-	-	T	209108313	G	T	209108313	3	4	939	1	0	0	0	0	1	0	0	0	7548	1203	42	4	728	4	IDH1	2	209108313	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	38992680	209108313	34091060	26	75500										
SH3BP4	0	genome.wustl.edu	37	chr2	235951482	235951482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cgccctgctcagcgaggagcGggtcaggctccggggccagc	17	15	2	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	235951482	235951482	G	T	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	1	known	missense	c.2069	p.R690L	1.000	pfam_SH3_2	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	35	0	0	15	4	21.05	-	-	-	T	235951482	G	T	235951482	3	4	939	1	0	0	0	0	1	0	0	0	14334	1116	39	3	2075	3	SH3BP4	2	235951482	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	26843169	235951482	7247891	27	75501										
PRR21	0	genome.wustl.edu	37	chr2	240982116	240982116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aagaggcatggacgaagggcCgtgggtgaagaggcatggat	19	5	0	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	240982116	240982116	C	A	SNP	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	missense	c.284	p.R95L	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	29	0	0	17	6	26.09	-	-	-	A	240982116	C	A	240982116	3	1	939	1	0	0	0	0	1	0	0	0	12673	652	23	3	888	3	PRR21	2	240982116	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	5030634	240982116	2217257	28	75502										
D2HGDH	0	genome.wustl.edu	37	chr2	242688292	242688292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aactgcagtcacctgtgtgcCgcccgcctgtggtcctggga	13	14	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	242688292	242688292	C	T	SNP	D2HGDH	ENST00000537090	human	ensembl	69_37n	1	known	missense	c.866	p.P289L	0.001	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	D2HGDH	HGNC	ENSG00000180902	101	1	0.98	51	8	13.33	-	-	-	T	242688292	C	T	242688292	3	4	939	1	0	0	0	0	1	0	0	0	4245	667	23	1		1	D2HGDH	2	242688292	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	1706176	242688292	511081	29	75503										
NFKBIZ	0	genome.wustl.edu	37	chr3	101571041	101571041	+	Silent	SNP	T	T	G													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cgaagtcataaacagaaggcTtctggccaagctgtggatga							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	101571041	101571041	T	G	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	silent	c.402	p.A134	0.977	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	85	0	0	26	21	44.68	-	-	-	G	101571041	T	G	101571041	2	3	939	1	0	0	0	0	0	0	0	1	10455	1596	56	5		5	NFKBIZ	3	101571041	Silent	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09		101571041	96451389	30	75504	526	2								
NFKBIZ	0	genome.wustl.edu	37	chr3	101571042	101571042	+	Missense_Mutation	SNP	T	T	G													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gaagtcataaacagaaggctTctggccaagctgtggatgat							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	101571042	101571042	T	G	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	1	known	missense	c.403	p.S135A	0.978	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	84	0	0	27	20	42.55	-	-	-	G	101571042	T	G	101571042	3	3	939	1	0	0	0	0	1	0	0	0	10455	1783	62	5	409	5	NFKBIZ	3	101571042	Missense_Mutation	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	1	101571042	96451388	31	75505	526	2								
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	71	0	0	41	26	38.81	-	-	-	A	178936091	G	A	178936091	3	1	939	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	77365049	178936091	19086339	32	75506										
FGFBP2	0	genome.wustl.edu	37	chr4	15964208	15964208	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	caggctgggtaggtttggctGtgggtcgggtggtgggtttg	22	4	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	15964208	15964208	G	C	SNP	FGFBP2	ENST00000259989	human	ensembl	69_37n	-1	known	missense	c.545	p.T182R	0.021	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441	295	0	0	116	37	24.18	-	-	-	C	15964208	G	C	15964208	3	2	939	1	0	0	0	0	1	0	0	0	5907	1377	48	4	130	4	FGFBP2	4	15964208	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		15964208	175190068	33	75507										
PDLIM5	0	genome.wustl.edu	37	chr4	95505975	95505975	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tattgtccgcatctgtgtttCgtatggcatacagtgaacaa	9	8	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	95505975	95505975	C	T	SNP	PDLIM5	ENST00000380176	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDLIM5	HGNC	ENSG00000163110	69	0	0	58	8	12.12	-	-	-	T	95505975	C	T	95505975	1	4	939	0	1	0	0	0	0	0	0	0	11756	899	31	1		1	PDLIM5	4	95505975	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	79541767	95505975	95648301	34	75508										
ARHGEF38	0	genome.wustl.edu	37	chr4	106580340	106580340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	acagctacctgcagcgatcaAcgggagaggagtcagacttg	13	10	2	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	106580340	106580340	A	G	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	1	putative	missense	c.1363	p.T455A	0.001	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	73	0	0	59	9	13.24	-	-	-	G	106580340	A	G	106580340	3	3	939	1	0	0	0	0	1	0	0	0	909	58	2	5		5	ARHGEF38	4	106580340	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09	11074365	106580340	84573936	35	75509										
SERINC5	0	genome.wustl.edu	37	chr5	79439630	79439630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctctcgatgttggcactttcGtagctgtggaaacaagacac	10	10	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	79439630	79439630	G	A	SNP	SERINC5	ENST00000512721	human	ensembl	69_37n	-1	novel	silent	c.1242	p.Y414	0.984	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	29	0	0	18	4	18.18	-	-	-	A	79439630	G	A	79439630	2	1	939	1	0	0	0	0	0	0	0	1	14171	1140	40	1		1	SERINC5	5	79439630	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		79439630	101475630	36	75510										
PCDHA1	0	genome.wustl.edu	37	chr5	140167486	140167486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctgcagttccaggtgagcgcGcgggatgcgggcgtgccgcc	18	13	0	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	140167486	140167486	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	1	known	silent	c.1611	p.A537	0.022	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	225	1	0.44	72	32	30.77	-	-	-	A	140167486	G	A	140167486	2	1	939	1	0	0	0	0	0	0	0	1	11592	1074	38	1		1	PCDHA1	5	140167486	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	60727856	140167486	40747774	37	75511										
DIAPH1	0	genome.wustl.edu	37	chr5	140958163	140958163	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	agttcctccgctggtgtgatGagagcattgatcagctgtag	13	8	1	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	140958163	140958163	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	silent	c.963	p.L321	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	41	0	0	16	11	40.74	-	-	-	A	140958163	G	A	140958163	2	1	939	1	0	0	0	0	0	0	0	1	4554	1277	45	2		2	DIAPH1	5	140958163	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	790677	140958163	39957097	38	75512										
VPS52	0	genome.wustl.edu	37	chr6	33232055	33232055	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ccagaacacctgctcatagcGtggcccatgacacaactgtg	9	14	1	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	33232055	33232055	G	A	SNP	VPS52	ENST00000493674	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS52	HGNC	ENSG00000223501	50	0	0	32	6	15.79	-	-	-	A	33232055	G	A	33232055	1	1	939	0	1	0	0	0	0	0	0	0	17311	1160	40	1		1	VPS52	6	33232055	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		33232055	137883012	39	75513										
GSTA3	0	genome.wustl.edu	37	chr6	52768488	52768488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tcttaccatttcttaactttCccaaatcttctgcagatcct	2	13	4	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	52768488	52768488	C	T	SNP	GSTA3	ENST00000211122	human	ensembl	69_37n	-1	known	missense	c.125	p.G42E	0.306	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA3	HGNC	ENSG00000174156	73	0	0	46	15	24.19	-	-	-	T	52768488	C	T	52768488	3	4	939	1	0	0	0	0	1	0	0	0	6883	855	30	2	563	2	GSTA3	6	52768488	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	19536433	52768488	118346579	40	75514										
PRDM13	0	genome.wustl.edu	37	chr6	100062278	100062278	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tcgcgcaagtatgggctcaaGatccacatgcggacgcacac	11	13	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	100062278	100062278	G	T	SNP	PRDM13	ENST00000369214	human	ensembl	69_37n	1	known	missense	c.1797	p.K599N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238	92	0	0	34	4	10.53	-	-	-	T	100062278	G	T	100062278	3	4	939	1	0	0	0	0	1	0	0	0	12535	933	33	2	1781	2	PRDM13	6	100062278	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	47293790	100062278	71052789	41	75515										
CHN2	0	genome.wustl.edu	37	chr7	29186256	29186256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgtcccaacctcctggtcccAgaaacctggccgcatcaagt	8	16	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	29186256	29186256	A	G	SNP	CHN2	ENST00000474070	human	ensembl	69_37n	1	known	missense	c.44	p.Q15R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHN2	HGNC	ENSG00000106069	113	1	0.88	53	10	15.62	-	-	-	G	29186256	A	G	29186256	3	3	939	1	0	0	0	0	1	0	0	0	3392	203	7	5		5	CHN2	7	29186256	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09		29186256	129952407	42	75516										
AUTS2	0	genome.wustl.edu	37	chr7	69364484	69364484	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	atgccgaaggcactcagacaGgtgaggaagcttgggttcgc	15	9	1	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	69364484	69364484	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	silent	c.522	p.Q174	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	35	0	0	21	7	25	-	-	-	A	69364484	G	A	69364484	2	1	939	1	0	0	0	0	0	0	0	1	1229	1014	35	4		4	AUTS2	7	69364484	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	40178228	69364484	89774179	43	75517										
PLOD3	0	genome.wustl.edu	37	chr7	100861213	100861213	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	caaaggaaaataagatttctTgtaagaacaccgtgaccaca	7	8	1	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	100861213	100861213	T	C	SNP	PLOD3	ENST00000414785	human	ensembl	69_37n	-1	putative	missense	c.38	p.Q13R	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	69	0	0	29	4	12.12	-	-	-	C	100861213	T	C	100861213	3	2	939	1	0	0	0	0	1	0	0	0	12177	1827	63	5		5	PLOD3	7	100861213	Missense_Mutation	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	31496729	100861213	58277450	44	75518										
SLC39A14	0	genome.wustl.edu	37	chr8	22272415	22272415	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cttcttaagcagaaaaatgaGgtgaggcccaattgttgctg	11	7	1	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	22272415	22272415	G	C	SNP	SLC39A14	ENST00000359741	human	ensembl	69_37n	1	known	missense	c.750	p.E250D	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635	99	0	0	31	17	35.42	-	-	-	C	22272415	G	C	22272415	3	2	939	1	0	0	0	0	1	0	0	0	14706	1014	35	4	938	4	SLC39A14	8	22272415	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		22272415	124091607	45	75519										
PLEKHA2	0	genome.wustl.edu	37	chr8	38809739	38809739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gtcccacaccatccttcgaaGgtctcagagttacatcccca	6	16	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	38809739	38809739	G	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	1	known	missense	c.542	p.R181M	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	44	0	0	30	4	11.76	-	-	-	T	38809739	G	T	38809739	3	4	939	1	0	0	0	0	1	0	0	0	12130	1000	35	4	564	4	PLEKHA2	8	38809739	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	16537324	38809739	107554283	46	75520										
ADAM2	0	genome.wustl.edu	37	chr8	39627085	39627085	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttactaaagatcttcacaccActgaaatgactaaagacaca	4	10	2	4			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	39627085	39627085	A	G	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	silent	c.1038	p.S346	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	51	0	0	20	8	28.57	-	-	-	G	39627085	A	G	39627085	2	3	939	1	0	0	0	0	0	0	0	1	241	156	6	5		5	ADAM2	8	39627085	Silent	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09	817346	39627085	106736937	47	75521										
ZNF251	0	genome.wustl.edu	37	chr8	145947639	145947639	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gctgggagctctggctgaaaGctttcccacattcaacgcac	10	13	2	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	145947639	145947639	G	T	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	missense	c.1406	p.A469D	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	43	0	0	34	4	10.53	-	-	-	T	145947639	G	T	145947639	3	4	939	1	0	0	0	0	1	0	0	0	17892	971	34	4	613	4	ZNF251	8	145947639	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	106320554	145947639	416383	48	75522										
GLDC	0	genome.wustl.edu	37	chr9	6535975	6535975	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	agggaagagtatcatcctcaGttgagagttcgggagttgct	14	6	2	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	6535975	6535975	G	T	SNP	GLDC	ENST00000477960	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLDC	HGNC	ENSG00000178445	49	0	0	36	5	11.9	-	-	-	T	6535975	G	T	6535975	1	4	939	0	1	0	0	0	0	0	0	0	6485	1044	36	4		4	GLDC	9	6535975	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		6535975	134677456	49	75523										
C9orf72	0	genome.wustl.edu	37	chr9	27547313	27547313	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aggcattttataatctcagaGttgcaatgattgccaaagca	8	7	1	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	27547313	27547313	G	T	SNP	C9orf72	ENST00000488117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf72	HGNC	ENSG00000147894	54	0	0	29	8	21.62	-	-	-	T	27547313	G	T	27547313	1	4	939	0	1	0	0	0	0	0	0	0	2520	1044	36	4		4	C9orf72	9	27547313	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	21011338	27547313	113666118	50	75524										
SECISBP2	0	genome.wustl.edu	37	chr9	91965711	91965711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ggttctcaaacacctgaagcTcaaaaaactgaaatgtgtca	7	9	3	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	91965711	91965711	T	C	SNP	SECISBP2	ENST00000375807	human	ensembl	69_37n	1	known	missense	c.2057	p.L686P	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	70	0	0	25	12	30.77	-	-	-	C	91965711	T	C	91965711	3	2	939	1	0	0	0	0	1	0	0	0	14094	1551	54	5	2111	5	SECISBP2	9	91965711	Missense_Mutation	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	64418398	91965711	49247720	51	75525										
PAPPA	0	genome.wustl.edu	37	chr9	119093538	119093538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tccaggtgtgtcgaaccaagGtgatagatctcagtgaaggc	13	8	1	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	119093538	119093538	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	missense	c.3163	p.V1055L	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	49	0	0	21	3	12.5	-	-	-	T	119093538	G	T	119093538	3	4	939	1	0	0	0	0	1	0	0	0	11505	1261	44	4	3205	4	PAPPA	9	119093538	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	27127827	119093538	22119893	52	75526										
MXI1	0	genome.wustl.edu	37	chr10	112046150	112046150	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tttcaaactccaaggttcccTtgtggccctctcccttaccc	5	17	2	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	10	112046150	112046150	T	C	SNP	MXI1	ENST00000485566	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MXI1	HGNC	ENSG00000119950	120	1	0.83	64	11	14.67	-	-	-	C	112046150	T	C	112046150	1	2	939	0	1	0	0	0	0	0	0	0	10074	1624	56	5		5	MXI1	10	112046150	RNA	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09		112046150	23488597	53	75527										
OR52K1	0	genome.wustl.edu	37	chr11	4510827	4510827	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cagttctccagcttgcctctCaggaggcccgctacaaggca	10	15	2	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	4510827	4510827	C	A	SNP	OR52K1	ENST00000307632	human	ensembl	69_37n	1	known	missense	c.697	p.Q233K	0.037	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52K1	HGNC	ENSG00000196778	135	0	0	76	24	24	-	-	-	A	4510827	C	A	4510827	3	1	939	1	0	0	0	0	1	0	0	0	11196	827	29	2	699	2	OR52K1	11	4510827	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09		4510827	130495689	54	75528										
OR4C11	0	genome.wustl.edu	37	chr11	55371242	55371242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgaaactacttgagcaaattGccccactgttagacaccaac	6	12	0	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	55371242	55371242	G	T	SNP	OR4C11	ENST00000302231	human	ensembl	69_37n	-1	known	missense	c.608	p.A203E	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C11	HGNC	ENSG00000172188	28	0	0	21	5	19.23	-	-	-	T	55371242	G	T	55371242	3	4	939	1	0	0	0	0	1	0	0	0	11118	1319	46	4	326	4	OR4C11	11	55371242	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	50860415	55371242	79635274	55	75529										
RBM14	0	genome.wustl.edu	37	chr11	66384361	66384361	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cgccatcgaagccctgcacgGccacgagctgcggccggggc	15	17	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	66384361	66384361	G	T	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	1	known	missense	c.170	p.G57V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	73	0	0	31	4	11.43	-	-	-	T	66384361	G	T	66384361	3	4	939	1	0	0	0	0	1	0	0	0	13198	1203	42	4	172	4	RBM14	11	66384361	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	11013119	66384361	68622155	56	75530										
RAD9A	0	genome.wustl.edu	37	chr11	67165622	67165622	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgtgcagaagagctgccaggCagtgtcttagatgtgagacg	15	7	1	4			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	67165622	67165622	C	T	SNP	RAD9A	ENST00000535644	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.180	-	-	-	no_errors	RAD9A	HGNC	ENSG00000172613	67	0	0	57	8	12.31	-	-	-	T	67165622	C	T	67165622	1	4	939	0	1	0	0	0	0	0	0	0	13078	725	25	4		4	RAD9A	11	67165622	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	781261	67165622	67840894	57	75531										
PITPNM1	0	genome.wustl.edu	37	chr11	67263648	67263648	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttatcttgtttgggggcgtaCccagcagcagggatgagcca	14	9	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	67263648	67263648	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	splice_site	c.2317+1	e14+1	1.000	-	-	-	no_errors	PITPNM1	HGNC	ENSG00000110697	56	0	0	17	11	39.29	-	-	-	T	67263648	C	T	67263648	5	4	939	1	0	0	0	0	0	0	1	0	12024	521	18	4	1456	4	PITPNM1	11	67263648	Splice_Site	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	98026	67263648	67742868	58	75532										
SOS2	0	genome.wustl.edu	37	chr14	50623685	50623685	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gtgtgtatatatatgtgtatAtatatatatataaaaaatat	5	0	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	50623685	50623685	A	G	SNP	SOS2	ENST00000555794	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SOS2	HGNC	ENSG00000100485	156	1	0.64	52	6	10.34	-	-	-	G	50623685	A	G	50623685	1	3	939	0	1	0	0	0	0	0	0	0	15026	464	16	5		5	SOS2	14	50623685	RNA	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09		50623685	56725855	59	75533										
PAPLN	0	genome.wustl.edu	37	chr14	73720533	73720533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ccagtcccgctccgtgtactGcatctcgtctgacggggccg	12	16	2	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	73720533	73720533	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	1	known	missense	c.1166	p.C389Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	135	0	0	64	25	28.09	-	-	-	A	73720533	G	A	73720533	3	1	939	1	0	0	0	0	1	0	0	0	11501	1319	46	4	1123	4	PAPLN	14	73720533	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	23096848	73720533	33629007	60	75534										
YLPM1	0	genome.wustl.edu	37	chr14	75265389	75265390	+	Frame_Shift_Ins	INS	-	-	T													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cctcttcgaagggctgggagINStagagagagaataccacccc							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	75265389	75265390	-	T	INS	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	frame_shift_ins	c.3389_3390	p.R1131fs	1.000:0.998	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	39	0	0	18	6	25	-	-	-	T	75265390	-	T	75265389	7	5	939	1	0	1	1	0	0	0	0	0	17583	1029	36	0	3407	0	YLPM1	14	75265389	Frame_Shift_Ins	INS	-	TCGA-GM-A3NY-01A-11D-A21Q-09	1544856	75265389	32084151	61	75535										
CEP152	0	genome.wustl.edu	37	chr15	49036477	49036477	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttaatgtactgcccacgaagTtcttccaaggctcccccact	6	15	1	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	15	49036477	49036477	T	C	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.3795	p.E1265	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	94	0	0	34	20	37.04	-	-	-	C	49036477	T	C	49036477	2	2	939	1	0	0	0	0	0	0	0	1	3277	1722	60	5		5	CEP152	15	49036477	Silent	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09		49036477	53494915	62	75536										
VASN	0	genome.wustl.edu	37	chr16	4431228	4431228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	caggctgcatgaaatcaccaAtgagaccttccgtggcctgc	10	13	1	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	4431228	4431228	A	G	SNP	VASN	ENST00000304735	human	ensembl	69_37n	1	known	missense	c.350	p.N117S	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140	132	0	0	79	20	20	-	-	-	G	4431228	A	G	4431228	3	3	939	1	0	0	0	0	1	0	0	0	17224	101	4	5	352	5	VASN	16	4431228	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09		4431228	85923525	63	75537										
N4BP1	0	genome.wustl.edu	37	chr16	48580088	48580088	+	Frame_Shift_Del	DEL	T	T	-													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cttccttctgaagaaactccTctaatcgaggtccacttctt							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	48580088	48580088	T	-	DEL	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	frame_shift_del	c.2303	p.E768fs	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	45	0	0	10	17	62.96	-	-	-	-	48580088	T	-	48580088	7	5	939	1	0	1	0	1	0	0	0	0	10181	1551	54	0	395	0	N4BP1	16	48580088	Frame_Shift_Del	DEL	T	TCGA-GM-A3NY-01A-11D-A21Q-09	44148860	48580088	41774665	64	75538										
HYDIN	0	genome.wustl.edu	37	chr16	70972595	70972595	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cctcagtcagggcatcatatTcttcctcatccatgttttgg	7	12	5	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	70972595	70972595	T	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6914	p.E2305G	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	146	0	0	51	6	10.53	-	-	-	C	70972595	T	C	70972595	3	2	939	1	0	0	0	0	1	0	0	0	7521	1783	62	5	8620	5	HYDIN	16	70972595	Missense_Mutation	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09	22392507	70972595	19382158	65	75539										
ABHD15	0	genome.wustl.edu	37	chr17	27893598	27893598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gccactagcccatcgtccgcCaactgcaggtactcccgggc	10	18	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	27893598	27893598	C	A	SNP	ABHD15	ENST00000307201	human	ensembl	69_37n	-1	known	missense	c.387	p.L129F	0.999	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792	37	0	0	6	8	57.14	-	-	-	A	27893598	C	A	27893598	3	1	939	1	0	0	0	0	1	0	0	0	81	593	21	4	1027	4	ABHD15	17	27893598	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09		27893598	53301612	66	75540										
EFCAB5	0	genome.wustl.edu	37	chr17	28268766	28268766	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tctttttgttattaatactgGtctagtaatattcttctata	4	5	4	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	28268766	28268766	G	T	SNP	EFCAB5	ENST00000421238	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	EFCAB5	HGNC	ENSG00000176927	22	0	0	12	3	20	-	-	-	T	28268766	G	T	28268766	1	4	939	0	1	0	0	0	0	0	0	0	4973	1276	44	4		4	EFCAB5	17	28268766	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	375168	28268766	52926444	67	75541										
PLEKHH3	0	genome.wustl.edu	37	chr17	40824270	40824270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cttagccagctgcaggaagaGttcatcccggagcgcgggca	14	12	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	40824270	40824270	G	T	SNP	PLEKHH3	ENST00000591022	human	ensembl	69_37n	-1	known	missense	c.910	p.L304I	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137	70	0	0	43	5	10.42	-	-	-	T	40824270	G	T	40824270	3	4	939	1	0	0	0	0	1	0	0	0	12152	1029	36	4	1499	4	PLEKHH3	17	40824270	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	12555504	40824270	40370940	68	75542										
ABCC3	0	genome.wustl.edu	37	chr17	48750363	48750363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	gtctgggggccagcggcagcGggtcagtctggctcgagctg	19	11	3	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	48750363	48750363	G	A	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	1	known	missense	c.2273	p.R758Q	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	95	0	0	42	35	45.45	-	-	-	A	48750363	G	A	48750363	3	1	939	1	0	0	0	0	1	0	0	0	54	1116	39	1	2427	1	ABCC3	17	48750363	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	7926093	48750363	32444847	69	75543										
UBL5	0	genome.wustl.edu	37	chr19	9939519	9939519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tctctttttcttaggtacacGatttttaaggaccacgtgtc	7	9	2	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	9939519	9939519	G	A	SNP	UBL5	ENST00000593087	human	ensembl	69_37n	1	putative	missense	c.59	p.R20Q	0.994	NULL	NULL	-	no_errors	UBL5	HGNC	ENSG00000198258	99	0	0	41	27	39.71	-	-	-	A	9939519	G	A	9939519	3	1	939	1	0	0	0	0	1	0	0	0	16986	1045	37	1	157	1	UBL5	19	9939519	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		9939519	49189464	70	75544										
ZNF90	0	genome.wustl.edu	37	chr19	20235929	20235929	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	cacagctgtggcgcactgcaGacgcggcaatggtctcatca	12	13	2	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	20235929	20235929	G	A	SNP	ZNF90	ENST00000474284	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF90	HGNC	ENSG00000213988	67	0	0	38	5	11.63	-	-	-	A	20235929	G	A	20235929	1	1	939	0	1	0	0	0	0	0	0	0	18292	957	33	2		2	ZNF90	19	20235929	RNA	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	10296410	20235929	38893054	71	75545										
MYH14	0	genome.wustl.edu	37	chr19	50804948	50804948	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgaccacagagctgtcagctGagcgcagtttctcagccaag	11	12	2	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	50804948	50804948	G	A	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	1	known	missense	c.5500	p.E1834K	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	59	0	0	27	16	37.21	-	-	-	A	50804948	G	A	50804948	3	1	939	1	0	0	0	0	1	0	0	0	10105	1291	45	2	5654	2	MYH14	19	50804948	Missense_Mutation	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09	30569019	50804948	8324035	72	75546										
SLC13A3	0	genome.wustl.edu	37	chr20	45242260	45242260	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttggagggcaagatgcccatGaaggggaagaggacgatggg	19	5	0	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	20	45242260	45242260	G	A	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	silent	c.216	p.F72	0.890	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	46	0	0	32	8	19.51	-	-	-	A	45242260	G	A	45242260	2	1	939	1	0	0	0	0	0	0	0	1	14482	1281	45	2		2	SLC13A3	20	45242260	Silent	SNP	G	TCGA-GM-A3NY-01A-11D-A21Q-09		45242260	17783260	73	75547										
TTC3	0	genome.wustl.edu	37	chr21	38460338	38460338	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctttgttaaaatagagttttTgccagcacttaaatattctt	5	6	1	1			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	21	38460338	38460338	T	A	SNP	TTC3	ENST00000484047	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TTC3	HGNC	ENSG00000182670	31	0	0	18	4	17.39	-	-	-	A	38460338	T	A	38460338	1	1	939	0	1	0	0	0	0	0	0	0	16794	1827	63	5		5	TTC3	21	38460338	RNA	SNP	T	TCGA-GM-A3NY-01A-11D-A21Q-09		38460338	9669557	74	75548										
IGLL5	0	genome.wustl.edu	37	chr22	23230300	23230300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tgggccctggtcccaggcagCgctggcccctgctgctgctg	15	16	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	23230300	23230300	C	T	SNP	IGLL5	ENST00000532223	human	ensembl	69_37n	1	known	missense	c.67	p.R23C	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	IGLL5	HGNC	ENSG00000254709	169	1	0.59	60	7	10.45	-	-	-	T	23230300	C	T	23230300	3	4	939	1	0	0	0	0	1	0	0	0	7648	768	27	1	69	1	IGLL5	22	23230300	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09		23230300	28074266	75	75549										
RFPL2	0	genome.wustl.edu	37	chr22	32587023	32587023	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	aagaggaaagtcagcggcacCgtggtggcagagaggcggcc	18	9	1	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	32587023	32587023	C	G	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	silent	c.873	p.T291	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	212	1	0.47	83	13	13.54	-	-	-	G	32587023	C	G	32587023	2	3	939	1	0	0	0	0	0	0	0	1	13337	639	23	3		3	RFPL2	22	32587023	Silent	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	9356723	32587023	18717543	76	75550										
ADM2	0	genome.wustl.edu	37	chr22	50921694	50921694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	agcaggggagagaggctgaaCtggccagaagtggcccctcc	16	11	0	3			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	50921694	50921694	C	T	SNP	ADM2	ENST00000362068	human	ensembl	69_37n	1	known	silent	c.559	p.L187	0.000	NULL	NULL	-	no_errors	ADM2	HGNC	ENSG00000128165	47	0	0	19	4	17.39	-	-	-	T	50921694	C	T	50921694	2	4	939	1	0	0	0	0	0	0	0	1	322	580	20	4		4	ADM2	22	50921694	Silent	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	18334671	50921694	382872	77	75551										
PDHA1	0	genome.wustl.edu	37	chrX	19377881	19377881	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ttcaatgaaattcttggaaaCttccattaagtgtgtagatt	7	5	2	2			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	19377881	19377881	C	T	SNP	PDHA1	ENST00000478795	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDHA1	HGNC	ENSG00000131828	32	0	0	20	4	16.67	-	-	-	T	19377881	C	T	19377881	1	4	939	0	1	0	0	0	0	0	0	0	11737	580	20	4		4	PDHA1	23	19377881	RNA	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09		19377881	135892679	78	75552										
ZNF711	0	genome.wustl.edu	37	chrX	84525714	84525715	+	Frame_Shift_Ins	INS	-	-	A													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tacccttgccatatttgcacINSaaaaaagtttaaatccaggg							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	84525714	84525715	-	A	INS	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	frame_shift_ins	c.1190_1191	p.F400fs	1.000:0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	53	0	0	38	14	26.92	-	-	-	A	84525715	-	A	84525714	7	5	939	1	0	1	1	0	0	0	0	0	18212	478	17	0	1192	0	ZNF711	23	84525714	Frame_Shift_Ins	INS	-	TCGA-GM-A3NY-01A-11D-A21Q-09	65147833	84525714	70744846	79	75553										
PCDH19	0	genome.wustl.edu	37	chrX	99663147	99663147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	ctggatcgtaagcgctgtccAgcgggatgcgcgtgccaggg	17	11	0	0			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	99663147	99663147	A	G	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.449	p.L150P	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	59	0	0	34	8	19.05	-	-	-	G	99663147	A	G	99663147	3	3	939	1	0	0	0	0	1	0	0	0	11587	188	7	5	3021	5	PCDH19	23	99663147	Missense_Mutation	SNP	A	TCGA-GM-A3NY-01A-11D-A21Q-09	15137433	99663147	55607413	80	75554										
UPF3B	0	genome.wustl.edu	37	chrX	118975127	118975129	+	In_Frame_Del	DEL	TCT	TCT	-													0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tatctttcctttttcgtttcTcttcttctttccatttcctc							TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	118975127	118975129	TCT	-	DEL	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	in_frame_del	c.719_717	p.E240in_frame_del	1.000:0.998:0.916	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	160	0	0	95	26	21.49	-	-	-	-	118975129	TCT	-	118975127	7	5	939	1	0	1	0	1	0	0	0	0	17103	1551	54	0	752	0	UPF3B	23	118975127	In_Frame_Del	DEL	TCT	TCGA-GM-A3NY-01A-11D-A21Q-09	19311980	118975127	36295433	81	75555										
THOC2	0	genome.wustl.edu	37	chrX	122766800	122766800	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.1	8	0.299989453105281	1.6722809766288	1.2890499194847	1.74645472962444	0.0271907389958272	0.251737451737452	0	tctgctgagccataagcagaCagagaggaagggcaagatca	13	8	2	4			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	122766800	122766800	C	A	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.2228	p.C743F	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	89	0	0	44	29	39.73	-	-	-	A	122766800	C	A	122766800	3	1	939	1	0	0	0	0	1	0	0	0	15960	478	17	4	2625	4	THOC2	23	122766800	Missense_Mutation	SNP	C	TCGA-GM-A3NY-01A-11D-A21Q-09	3791673	122766800	32503760	82	75556										
SLC22A16	0	genome.wustl.edu	37	chr6	110757113	110757113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aatgaggccaaatgctgcccCgatggcaaattttccaacca	8	12	0	1			TCGA-GM-A3XG-01A-31D-A243-09	TCGA-GM-A3XG-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e92fbc5-c484-449a-8a40-8d820d6fd64d	c1481d6c-531b-4d94-be70-9370c5e53417	6	110757113	110757113	C	T	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.1363	p.G455R	0.100	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	16	0	0	17	5	22.73	-	-	-	T	110757113	C	T	110757113	3	4	940	1	0	0	0	0	1	0	0	0	14536	652	23	1	382	1	SLC22A16	6	110757113	Missense_Mutation	SNP	C	TCGA-GM-A3XG-01A-31D-A243-09		110757113	60357954	1	75557										
DCTN5	0	genome.wustl.edu	37	chr16	23680339	23680339	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ataggagtttataattatgtGctgatgtattcgaagatgtg	11	2	0	2			TCGA-GM-A3XG-01A-31D-A243-09	TCGA-GM-A3XG-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e92fbc5-c484-449a-8a40-8d820d6fd64d	c1481d6c-531b-4d94-be70-9370c5e53417	16	23680339	23680339	G	T	SNP	DCTN5	ENST00000563614	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DCTN5	HGNC	ENSG00000166847	43	0	0	36	4	10	-	-	-	T	23680339	G	T	23680339	1	4	940	0	1	0	0	0	0	0	0	0	4341	1334	46	4		4	DCTN5	16	23680339	RNA	SNP	G	TCGA-GM-A3XG-01A-31D-A243-09		23680339	66674414	2	75558										
COG1	0	genome.wustl.edu	37	chr17	71197882	71197882	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cctgggaaaatcagagagctCagagaaaccagcaagggagt	13	8	2	2			TCGA-GM-A3XG-01A-31D-A243-09	TCGA-GM-A3XG-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e92fbc5-c484-449a-8a40-8d820d6fd64d	c1481d6c-531b-4d94-be70-9370c5e53417	17	71197882	71197882	C	A	SNP	COG1	ENST00000299886	human	ensembl	69_37n	1	known	nonsense	c.1916	p.S639*	0.008	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	42	0	0	35	4	10.26	-	-	-	A	71197882	C	A	71197882	4	1	940	1	0	0	0	0	0	1	0	0	3687	838	29	2	1942	2	COG1	17	71197882	Nonsense_Mutation	SNP	C	TCGA-GM-A3XG-01A-31D-A243-09		71197882	9997328	3	75559										
TMEM104	0	genome.wustl.edu	37	chr17	72787153	72787153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cgggtggaaatgggacaaatGgcctccatgttcttcaataa	11	8	2	0			TCGA-GM-A3XG-01A-31D-A243-09	TCGA-GM-A3XG-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e92fbc5-c484-449a-8a40-8d820d6fd64d	c1481d6c-531b-4d94-be70-9370c5e53417	17	72787153	72787153	G	T	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	1	known	missense	c.405	p.M135I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	22	0	0	25	4	13.79	-	-	-	T	72787153	G	T	72787153	3	4	940	1	0	0	0	0	1	0	0	0	16113	1348	47	4	423	4	TMEM104	17	72787153	Missense_Mutation	SNP	G	TCGA-GM-A3XG-01A-31D-A243-09	1589271	72787153	8408057	4	75560										
CECR2	0	genome.wustl.edu	37	chr22	17978507	17978507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aattctggggcactatattgGtatttctatggaacacgaat	9	6	2	0			TCGA-GM-A3XG-01A-31D-A243-09	TCGA-GM-A3XG-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7e92fbc5-c484-449a-8a40-8d820d6fd64d	c1481d6c-531b-4d94-be70-9370c5e53417	22	17978507	17978507	G	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	1	novel	missense	c.405	p.W135C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	32	0	0	31	4	11.43	-	-	-	T	17978507	G	T	17978507	3	4	940	1	0	0	0	0	1	0	0	0	3235	1270	44	4	357	4	CECR2	22	17978507	Missense_Mutation	SNP	G	TCGA-GM-A3XG-01A-31D-A243-09		17978507	33326059	5	75561										
PINK1	0	genome.wustl.edu	37	chr1	20972049	20972049	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gaggccctctcccctctccgCcagctatccctgtaccctgc	7	21	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	20972049	20972049	C	A	SNP	PINK1	ENST00000400490	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.393	-	-	-	no_errors	PINK1	HGNC	ENSG00000158828	51	0	0	40	21	34.43	-	-	-	A	20972049	C	A	20972049	1	1	941	0	1	0	0	0	0	0	0	0	12006	754	26	4		4	PINK1	1	20972049	RNA	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		20972049	228278572	1	75562										
CELA3B	0	genome.wustl.edu	37	chr1	22304463	22304463	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cctcccgcctcggcctctcaAagcactaggattacaggtgt	9	15	1	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	22304463	22304463	A	G	SNP	CELA3B	ENST00000374666	human	ensembl	69_37n	1	known	silent	c.75	p.Q25	0.000	NULL	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_stop_codon:bad_bp_length_for_coding_region	CELA3B	HGNC	ENSG00000219073	24	0	0	11	3	21.43	-	-	-	G	22304463	A	G	22304463	2	3	941	1	0	0	0	0	0	0	0	1	3243	29	1	5		5	CELA3B	1	22304463	Silent	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	1332414	22304463	226946158	2	75563										
RPS6KA1	0	genome.wustl.edu	37	chr1	26887564	26887564	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	taagagcaagcgggatccttCagaagagattgagattcttc	11	7	2	4			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	26887564	26887564	C	T	SNP	RPS6KA1	ENST00000531382	human	ensembl	69_37n	1	known	missense	c.1397	p.S466L	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676	30	0	0	17	16	48.48	-	-	-	T	26887564	C	T	26887564	3	4	941	1	0	0	0	0	1	0	0	0	13736	838	29	2	1571	2	RPS6KA1	1	26887564	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	4583101	26887564	222363057	3	75564										
CYP4X1	0	genome.wustl.edu	37	chr1	47489663	47489663	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cactggttccttgggcaccaGaaggtagatgggagggagga	17	7	0	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	47489663	47489663	G	A	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	1	known	silent	c.174	p.Q58	0.982	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	75	0	0	58	29	33.33	-	-	-	A	47489663	G	A	47489663	2	1	941	1	0	0	0	0	0	0	0	1	4224	933	33	2		2	CYP4X1	1	47489663	Silent	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	20602099	47489663	201760958	4	75565										
USP24	0	genome.wustl.edu	37	chr1	55589148	55589148	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tggctccgaagctgtaggcaCgtaacaagaagagacaaagc	12	9	0	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	55589148	55589148	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	silent	c.4248	p.T1416	0.029	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	36	0	0	41	24	36.36	-	-	-	T	55589148	C	T	55589148	2	4	941	1	0	0	0	0	0	0	0	1	17152	523	19	1		1	USP24	1	55589148	Silent	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	8099485	55589148	193661473	5	75566										
ZRANB2	0	genome.wustl.edu	37	chr1	71529633	71529633	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ttgcattgtcactggaaataCtgttaagagaaaccttttta	7	6	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	71529633	71529633	C	T	SNP	ZRANB2	ENST00000477096	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZRANB2	HGNC	ENSG00000132485	36	0	0	62	14	18.42	-	-	-	T	71529633	C	T	71529633	1	4	941	0	1	0	0	0	0	0	0	0	18316	580	20	4		4	ZRANB2	1	71529633	RNA	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	15940485	71529633	177720988	6	75567										
CRYZ	0	genome.wustl.edu	37	chr1	75180309	75180309	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cactctctccagctttcacaCaggcactgcaaaggaaagca	7	14	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	75180309	75180309	C	G	SNP	CRYZ	ENST00000340866	human	ensembl	69_37n	-1	known	missense	c.434	p.C145S	0.008	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZ	HGNC	ENSG00000116791	53	0	0	56	16	22.22	-	-	-	G	75180309	C	G	75180309	3	3	941	1	0	0	0	0	1	0	0	0	3952	478	17	4	575	4	CRYZ	1	75180309	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	3650676	75180309	174070312	7	75568										
HSD17B7	0	genome.wustl.edu	37	chr1	162770091	162770091	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cattttcagatgaggacactAaatctcggagaacttaagtc	8	8	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	162770091	162770091	A	T	SNP	HSD17B7	ENST00000470195	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B7	HGNC	ENSG00000132196	49	0	0	41	60	59.41	-	-	-	T	162770091	A	T	162770091	1	4	941	0	1	0	0	0	0	0	0	0	7439	377	13	5		5	HSD17B7	1	162770091	RNA	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	87589782	162770091	86480530	8	75569										
RASSF5	0	genome.wustl.edu	37	chr1	206757788	206757788	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ggcggcctgtgacggtgcctGctgggatccggccccagtcc	16	15	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	206757788	206757788	G	C	SNP	RASSF5	ENST00000355294	human	ensembl	69_37n	1	known	missense	c.760	p.A254P	0.850	NULL	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF5	HGNC	ENSG00000136653	35	0	0	43	24	34.78	-	-	-	C	206757788	G	C	206757788	3	2	941	1	0	0	0	0	1	0	0	0	13172	1319	46	4	898	4	RASSF5	1	206757788	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	43987697	206757788	42492833	9	75570										
C1orf116	0	genome.wustl.edu	37	chr1	207195857	207195857	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aggtccctgagctggacctgGagctggagccggagcttgag	17	10	0	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	207195857	207195857	G	C	SNP	C1orf116	ENST00000359470	human	ensembl	69_37n	-1	known	missense	c.1252	p.P418A	0.083	NULL	NULL	-	no_errors	C1orf116	HGNC	ENSG00000182795	21	0	0	43	13	23.21	-	-	-	C	207195857	G	C	207195857	3	2	941	1	0	0	0	0	1	0	0	0	2008	1174	41	2	557	2	C1orf116	1	207195857	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	438069	207195857	42054764	10	75571										
RYR2	0	genome.wustl.edu	37	chr1	237804204	237804204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	acattcatgaaagtgacacaGaggaggaggaagatgacact	12	6	1	5			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	237804204	237804204	G	C	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.7117	p.E2373Q	0.850	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	93	0	0	97	40	29.2	-	-	-	C	237804204	G	C	237804204	3	2	941	1	0	0	0	0	1	0	0	0	13855	943	33	2	7309	2	RYR2	1	237804204	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	30608347	237804204	11446417	11	75572										
NLRP3	0	genome.wustl.edu	37	chr1	247587695	247587695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ctttgacgagcacataggacCgctctgcactgactggcaga	11	12	1	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	1	247587695	247587695	C	A	SNP	NLRP3	ENST00000336119	human	ensembl	69_37n	1	known	missense	c.950	p.P317Q	0.003	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711	13	0	0	17	20	54.05	-	-	-	A	247587695	C	A	247587695	3	1	941	1	0	0	0	0	1	0	0	0	10550	652	23	3	960	3	NLRP3	1	247587695	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	9783491	247587695	1662926	12	75573										
TSSC1	0	genome.wustl.edu	37	chr2	3357043	3357043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgaaaagcatctgaagataaCccttggctcaatttttagtc	7	8	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	2	3357043	3357043	C	T	SNP	TSSC1	ENST00000406835	human	ensembl	69_37n	-1	known	missense	c.178	p.V60I	0.004	NULL	NULL	-	no_errors	TSSC1	HGNC	ENSG00000032389	83	0	0	81	31	27.68	-	-	-	T	3357043	C	T	3357043	3	4	941	1	0	0	0	0	1	0	0	0	16762	522	18	4		4	TSSC1	2	3357043	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		3357043	239842330	13	75574										
TANC1	0	genome.wustl.edu	37	chr2	160006963	160006963	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tagcaccgatagcccctgctCaaccttgaatagctgtgtca	8	13	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	2	160006963	160006963	C	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	1	known	nonsense	c.578	p.S193*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	62	0	0	22	18	45	-	-	-	G	160006963	C	G	160006963	4	3	941	1	0	0	0	0	0	1	0	0	15636	838	29	2	596	2	TANC1	2	160006963	Nonsense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	156649920	160006963	83192410	14	75575										
XIRP2	0	genome.wustl.edu	37	chr2	168107125	168107125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aacagaaagaaaataaaattGccaaagagaaaacagtacag	7	5	0	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	2	168107125	168107125	G	C	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.9223	p.A3075P	0.004	superfamily_FH2_actin-bd	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	8	0	0	30	6	16.67	-	-	-	C	168107125	G	C	168107125	3	2	941	1	0	0	0	0	1	0	0	0	17527	1319	46	4	9253	4	XIRP2	2	168107125	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	8100162	168107125	75092248	15	75576										
TATDN2	0	genome.wustl.edu	37	chr3	10291219	10291219	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cactcgggggttcctgtcttCagggggatcccctctgcgtc	13	14	3	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	3	10291219	10291219	C	A	SNP	TATDN2	ENST00000287652	human	ensembl	69_37n	1	known	nonsense	c.335	p.S112*	0.031	NULL	pfam_TatD_superfamily	-	no_errors	TATDN2	HGNC	ENSG00000157014	12	0	0	24	9	27.27	-	-	-	A	10291219	C	A	10291219	4	1	941	1	0	0	0	0	0	1	0	0	15684	838	29	2	337	2	TATDN2	3	10291219	Nonsense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		10291219	187731211	16	75577										
CELSR3	0	genome.wustl.edu	37	chr3	48699704	48699704	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tccctgtcctgtctctcgttCgcggctgcccaatggctgga	11	15	1	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	3	48699704	48699704	C	G	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	missense	c.364	p.E122Q	0.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	81	0	0	52	30	36.59	-	-	-	G	48699704	C	G	48699704	3	3	941	1	0	0	0	0	1	0	0	0	3252	893	31	3	9714	3	CELSR3	3	48699704	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	38408485	48699704	149322726	17	75578										
SI	0	genome.wustl.edu	37	chr3	164716431	164716431	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtggaacgagaaattacaatCcctctttttccagttgtctt	7	9	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	3	164716431	164716431	C	T	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	silent	c.4437	p.G1479	0.997	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	67	0	0	74	15	16.85	-	-	-	T	164716431	C	T	164716431	2	4	941	1	0	0	0	0	0	0	0	1	14386	842	30	2		2	SI	3	164716431	Silent	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	116016727	164716431	33305999	18	75579										
MUC4	0	genome.wustl.edu	37	chr3	195509449	195509449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aggtggcgtgacctatggatGctgaggaagtgtcggtgaca	17	6	0	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	3	195509449	195509449	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.9002	p.A3001V	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	35	0	0	29	7	19.44	-	-	-	A	195509449	G	A	195509449	3	1	941	1	0	0	0	0	1	0	0	0	10050	1319	46	4		4	MUC4	3	195509449	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	30793018	195509449	2512981	19	75580										
ANXA3	0	genome.wustl.edu	37	chr4	79500181	79500181	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ataacttttgtttcatttagGaactgatgagaaaatgctca	7	5	2	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	79500181	79500181	G	C	SNP	ANXA3	ENST00000264908	human	ensembl	69_37n	1	known	missense	c.104	p.G35A	1.000	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIII	-	no_errors	ANXA3	HGNC	ENSG00000138772	22	0	0	29	16	34.78	-	-	-	C	79500181	G	C	79500181	3	2	941	1	0	0	0	0	1	0	0	0	718	1188	41	2	114	2	ANXA3	4	79500181	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		79500181	111654095	20	75581										
PDLIM5	0	genome.wustl.edu	37	chr4	95498545	95498545	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgctgctgagagagggagagCaggagctctagaagaacagc	16	7	1	5			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	95498545	95498545	C	G	SNP	PDLIM5	ENST00000538141	human	ensembl	69_37n	1	known	missense	c.312	p.S104R	0.268	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110	23	0	0	36	29	44.62	-	-	-	G	95498545	C	G	95498545	3	3	941	1	0	0	0	0	1	0	0	0	11756	725	25	4		4	PDLIM5	4	95498545	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	15998364	95498545	95655731	21	75582										
METAP1	0	genome.wustl.edu	37	chr4	99944097	99944097	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ataggcactgagaaggttgcGgacatgtaggggctggaagt	17	5	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	99944097	99944097	G	A	SNP	METAP1	ENST00000506548	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	METAP1	HGNC	ENSG00000164024	9	0	0	11	7	38.89	-	-	-	A	99944097	G	A	99944097	1	1	941	0	1	0	0	0	0	0	0	0	9557	1131	39	1		1	METAP1	4	99944097	RNA	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	4445552	99944097	91210179	22	75583										
TNIP3	0	genome.wustl.edu	37	chr4	122059806	122059806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cttgtgttgtacatctggcgGaagctggtcaagagcatacc	12	9	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	122059806	122059806	G	A	SNP	TNIP3	ENST00000057513	human	ensembl	69_37n	-1	known	missense	c.919	p.P307S	1.000	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	55	0	0	59	26	30.59	-	-	-	A	122059806	G	A	122059806	3	1	941	1	0	0	0	0	1	0	0	0	16411	1174	41	2	66	2	TNIP3	4	122059806	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	22115709	122059806	69094470	23	75584										
TNIP3	0	genome.wustl.edu	37	chr4	122071373	122071373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tattcaaggcatcctgaagaGcctacgtaataagataagta	8	7	1	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	122071373	122071373	G	C	SNP	TNIP3	ENST00000057513	human	ensembl	69_37n	-1	known	missense	c.494	p.A165G	0.997	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730	33	0	0	47	10	17.54	-	-	-	C	122071373	G	C	122071373	3	2	941	1	0	0	0	0	1	0	0	0	16411	985	34	4	507	4	TNIP3	4	122071373	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	11567	122071373	69082903	24	75585										
FBXW7	0	genome.wustl.edu	37	chr4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ttcatgaagatgcatacaacGcacagtggaagtatgcccat	9	9	1	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	153249385	153249385	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1393	p.R465C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	71	0	0	47	39	45.35	-	-	-	A	153249385	G	A	153249385	3	1	941	1	0	0	0	0	1	0	0	0	5815	1087	38	1	746	1	FBXW7	4	153249385	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	31178012	153249385	37904891	25	75586										
MND1	0	genome.wustl.edu	37	chr4	154271274	154271274	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tcgcatgatggaaatattttCtgaaacagtaagtcattttc	7	6	2	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	154271274	154271274	C	G	SNP	MND1	ENST00000240488	human	ensembl	69_37n	1	known	missense	c.62	p.S21C	1.000	pfam_Mnd1,pfam_Pencillinase_R,pirsf_Mnd1	pfam_Mnd1,pfam_Pencillinase_R,pirsf_Mnd1	-	no_errors	MND1	HGNC	ENSG00000121211	35	0	0	36	31	46.27	-	-	-	G	154271274	C	G	154271274	3	3	941	1	0	0	0	0	1	0	0	0	9747	913	32	2	68	2	MND1	4	154271274	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	1021889	154271274	36883002	26	75587										
FGB	0	genome.wustl.edu	37	chr4	155487118	155487118	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtagaaagaaaagcccctgaTgctggaggctgtcttcacgc	12	10	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	4	155487118	155487118	T	C	SNP	FGB	ENST00000302068	human	ensembl	69_37n	1	known	silent	c.273	p.D91	1.000	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGB	HGNC	ENSG00000171564	16	0	0	11	19	63.33	-	-	-	C	155487118	T	C	155487118	2	2	941	1	0	0	0	0	0	0	0	1	5877	1461	51	5		5	FGB	4	155487118	Silent	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	1215844	155487118	35667158	27	75588										
DNAJC18	0	genome.wustl.edu	37	chr5	138778163	138778163	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ggggcacagggaaaaggtctGgaggtactacctggagatgt	17	6	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	5	138778163	138778163	G	A	SNP	DNAJC18	ENST00000505268	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	DNAJC18	HGNC	ENSG00000170464	45	0	0	60	7	10.45	-	-	-	A	138778163	G	A	138778163	1	1	941	0	1	0	0	0	0	0	0	0	4672	1363	47	4		4	DNAJC18	5	138778163	RNA	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		138778163	42137097	28	75589										
HK3	0	genome.wustl.edu	37	chr5	176308172	176308172	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ctgcaggaacgtgaccacacAgcgaggggccagctcccgca	13	15	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	5	176308172	176308172	A	C	SNP	HK3	ENST00000292432	human	ensembl	69_37n	-1	known	missense	c.2674	p.C892G	0.995	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	27	0	0	31	15	32.61	-	-	-	C	176308172	A	C	176308172	3	2	941	1	0	0	0	0	1	0	0	0	7243	188	7	5	101	5	HK3	5	176308172	Missense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	37530009	176308172	4607088	29	75590										
MUC21	0	genome.wustl.edu	37	chr6	30955119	30955119	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtgtccagtggggccagcacAgccaccacctctgagtccag	12	15	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	6	30955119	30955119	A	T	SNP	MUC21	ENST00000376296	human	ensembl	69_37n	1	known	silent	c.1167	p.T389	0.074	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	52	0	0	52	8	13.33	-	-	-	T	30955119	A	T	30955119	2	4	941	1	0	0	0	0	0	0	0	1	10049	175	7	5		5	MUC21	6	30955119	Silent	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09		30955119	140159948	30	75591										
SIM1	0	genome.wustl.edu	37	chr6	100841736	100841736	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cactggctgtcatgatcagaTtccgatctttctgtgtgaaa	9	9	4	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	6	100841736	100841736	T	C	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	silent	c.1197	p.E399	0.997	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	13	0	0	29	11	27.5	-	-	-	C	100841736	T	C	100841736	2	2	941	1	0	0	0	0	0	0	0	1	14412	1490	52	5		5	SIM1	6	100841736	Silent	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	69886617	100841736	70273331	31	75592										
MEPCE	0	genome.wustl.edu	37	chr7	100028728	100028728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	catcttcctcctcccgacatCgcaaacgtcgcaggacttcc	6	18	1	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	7	100028728	100028728	C	T	SNP	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	missense	c.1087	p.R363C	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	35	0	0	20	30	57.69	-	-	-	T	100028728	C	T	100028728	3	4	941	1	0	0	0	0	1	0	0	0	9548	884	31	1	1089	1	MEPCE	7	100028728	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		100028728	59109935	32	75593										
IMMP2L	0	genome.wustl.edu	37	chr7	111161425	111161425	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gacccgatccaagaaagtcaCtgccacaggcaccgccacaa	8	16	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	7	111161425	111161425	C	G	SNP	IMMP2L	ENST00000331762	human	ensembl	69_37n	-1	known	missense	c.79	p.V27L	1.000	tigrfam_Pept_S26A_signal_pept_1	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Pept_S26A_signal_pept_1,tigrfam_Pept_S26A_signal_pept_1	-	no_errors	IMMP2L	HGNC	ENSG00000184903	44	0	0	50	9	15	-	-	-	G	111161425	C	G	111161425	3	3	941	1	0	0	0	0	1	0	0	0	7771	565	20	4	468	4	IMMP2L	7	111161425	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	11132697	111161425	47977238	33	75594										
FLNC	0	genome.wustl.edu	37	chr7	128491319	128491319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gttctatgtggatgccatcaAcagccgccatgtcagtgcct	10	12	3	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	7	128491319	128491319	A	G	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.5573	p.N1858S	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	63	0	0	60	15	19.74	-	-	-	G	128491319	A	G	128491319	3	3	941	1	0	0	0	0	1	0	0	0	5981	43	2	5	5707	5	FLNC	7	128491319	Missense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	17329894	128491319	30647344	34	75595										
THAP1	0	genome.wustl.edu	37	chr8	42693372	42693372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aaaactgagagattaacaggGgtctgaagaggcggcattag	14	5	1	4			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	8	42693372	42693372	G	A	SNP	THAP1	ENST00000254250	human	ensembl	69_37n	-1	known	silent	c.375	p.T125	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP1	HGNC	ENSG00000131931	25	0	0	20	16	44.44	-	-	-	A	42693372	G	A	42693372	2	1	941	1	0	0	0	0	0	0	0	1	15936	1219	43	4		4	THAP1	8	42693372	Silent	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		42693372	103670650	35	75596										
CSMD3	0	genome.wustl.edu	37	chr8	114031335	114031335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tccacggtatcgatgattgcTgtctgtaacaaaatgcagtc	9	9	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	8	114031335	114031335	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.991	p.S331G	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	56	0	0	74	19	20.43	-	-	-	C	114031335	T	C	114031335	3	2	941	1	0	0	0	0	1	0	0	0	3978	1580	55	5	10396	5	CSMD3	8	114031335	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	71337963	114031335	32332687	36	75597										
TRAPPC9	0	genome.wustl.edu	37	chr8	141468548	141468548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ggtgggtgaccgtggcgcgcGcggcctgggagcgcctccag	20	13	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	8	141468548	141468548	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	missense	c.116	p.A39V	0.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	82	0	0	133	25	15.62	-	-	-	A	141468548	G	A	141468548	3	1	941	1	0	0	0	0	1	0	0	0	16561	1087	38	1	3716	1	TRAPPC9	8	141468548	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	27437213	141468548	4895474	37	75598										
RHPN1	0	genome.wustl.edu	37	chr8	144463488	144463488	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgccacgcctgtcccaggggAaggggcctgacatcttccat	12	14	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	8	144463488	144463488	A	T	SNP	RHPN1	ENST00000289013	human	ensembl	69_37n	1	known	nonsense	c.1462	p.K488*	0.001	pfam_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106	36	0	0	69	28	28.87	-	-	-	T	144463488	A	T	144463488	4	4	941	1	0	0	0	0	0	1	0	0	13434	247	9	5	1508	5	RHPN1	8	144463488	Nonsense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	2994940	144463488	1900534	38	75599										
ZC3H3	0	genome.wustl.edu	37	chr8	144550658	144550658	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gcagtactccttcctcttctCcctgcgctgccgcgcctgcc	8	20	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	8	144550658	144550658	C	G	SNP	ZC3H3	ENST00000262577	human	ensembl	69_37n	-1	known	missense	c.1999	p.E667Q	0.957	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164	67	0	0	117	23	16.43	-	-	-	G	144550658	C	G	144550658	3	3	941	1	0	0	0	0	1	0	0	0	17665	864	30	2	871	2	ZC3H3	8	144550658	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	87170	144550658	1813364	39	75600										
TTC39B	0	genome.wustl.edu	37	chr9	15190604	15190604	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aagatggttaagcagcacagTgcagacctcatgctccttcc	9	12	1	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	9	15190604	15190604	T	G	SNP	TTC39B	ENST00000512701	human	ensembl	69_37n	-1	known	silent	c.1053	p.A351	0.044	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	34	0	0	42	20	32.26	-	-	-	G	15190604	T	G	15190604	2	3	941	1	0	0	0	0	0	0	0	1	16805	1683	59	5		5	TTC39B	9	15190604	Silent	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09		15190604	126022827	40	75601										
UBAP2	0	genome.wustl.edu	37	chr9	33934266	33934266	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgagcttcgtaggcttcagaAaggatgtggagacactcagt	13	7	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	9	33934266	33934266	A	T	SNP	UBAP2	ENST00000474372	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBAP2	HGNC	ENSG00000137073	15	0	0	20	9	31.03	-	-	-	T	33934266	A	T	33934266	1	4	941	0	1	0	0	0	0	0	0	0	16934	29	1	5		5	UBAP2	9	33934266	RNA	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	18743662	33934266	107279165	41	75602										
ANKRD30A	0	genome.wustl.edu	37	chr10	37422843	37422843	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gttatctctttgttattttaGcacagccctcatgcttgctg	7	10	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	10	37422843	37422843	G	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	1	known	splice_site	c.450-1	e5-1	0.990	-	-	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	94	0	0	87	47	35.07	-	-	-	A	37422843	G	A	37422843	5	1	941	1	0	0	0	0	0	0	1	0	658	985	34	4	467	4	ANKRD30A	10	37422843	Splice_Site	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		37422843	98111904	42	75603										
ARHGAP19	0	genome.wustl.edu	37	chr10	99030411	99030411	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ttggtaaatcgaagagacagGaagaaagctttccccttgtt	10	7	0	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	10	99030411	99030411	G	T	SNP	ARHGAP19	ENST00000479633	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARHGAP19	HGNC	ENSG00000213390	42	0	0	17	10	37.04	-	-	-	T	99030411	G	T	99030411	1	4	941	0	1	0	0	0	0	0	0	0	871	1189	41	2		2	ARHGAP19	10	99030411	RNA	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	61607568	99030411	36504336	43	75604										
BTRC	0	genome.wustl.edu	37	chr10	103295142	103295142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aagtacttgtgaatttgtaaGgaccttaaatggacacaaac	8	6	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	10	103295142	103295142	G	C	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	1	known	missense	c.1379	p.R460T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	46	0	0	26	34	56.67	-	-	-	C	103295142	G	C	103295142	3	2	941	1	0	0	0	0	1	0	0	0	1578	1000	35	4	1421	4	BTRC	10	103295142	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	4264731	103295142	32239605	44	75605										
OR51A2	0	genome.wustl.edu	37	chr11	4976926	4976926	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtggtgatttcaacatatgaTgtgttgataatggacatgat	11	3	1	4			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	4976926	4976926	T	A	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	silent	c.18	p.T6	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	58	0	0	48	37	43.53	-	-	-	A	4976926	T	A	4976926	2	1	941	1	0	0	0	0	0	0	0	1	11159	1451	51	5		5	OR51A2	11	4976926	Silent	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09		4976926	130029590	45	75606										
OR5B3	0	genome.wustl.edu	37	chr11	58170355	58170355	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	atgactgctggaatatcacaGaaaaagtgatggacttcatt	9	6	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	58170355	58170355	G	C	SNP	OR5B3	ENST00000309403	human	ensembl	69_37n	-1	known	missense	c.528	p.F176L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5B3	HGNC	ENSG00000172769	26	0	0	34	16	32	-	-	-	C	58170355	G	C	58170355	3	2	941	1	0	0	0	0	1	0	0	0	11225	933	33	2	418	2	OR5B3	11	58170355	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	53193429	58170355	76836161	46	75607										
MS4A10	0	genome.wustl.edu	37	chr11	60565929	60565929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tcaaaggcctgccggtggagCccccgccatcctaccagagt	11	16	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	60565929	60565929	C	T	SNP	MS4A10	ENST00000308287	human	ensembl	69_37n	1	known	missense	c.664	p.P222S	0.003	NULL	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689	60	0	0	61	42	40.78	-	-	-	T	60565929	C	T	60565929	3	4	941	1	0	0	0	0	1	0	0	0	9927	739	26	4	686	4	MS4A10	11	60565929	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	2395574	60565929	74440587	47	75608										
RASGRP2	0	genome.wustl.edu	37	chr11	64508450	64508450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgtcgattaggctgctgtgcCgtcggttcccttcttggtct	12	11	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	64508450	64508450	C	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.341	p.R114Q	0.997	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	36	0	0	63	9	12.5	-	-	-	T	64508450	C	T	64508450	3	4	941	1	0	0	0	0	1	0	0	0	13158	652	23	1	1536	1	RASGRP2	11	64508450	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	3942521	64508450	70498066	48	75609										
CADM1	0	genome.wustl.edu	37	chr11	115102163	115102163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gacttcaatctcctcaccttCcaccgcagtgtctttctgga	6	15	5	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	115102163	115102163	C	G	SNP	CADM1	ENST00000452722	human	ensembl	69_37n	-1	known	missense	c.472	p.E158Q	1.000	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM1	HGNC	ENSG00000182985	137	0	0	96	20	17.24	-	-	-	G	115102163	C	G	115102163	3	3	941	1	0	0	0	0	1	0	0	0	2591	864	30	2	884	2	CADM1	11	115102163	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	50593713	115102163	19904353	49	75610										
TECTA	0	genome.wustl.edu	37	chr11	121000467	121000467	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgactgtccagtactcagacAtaggtctattgtacatccgg	9	10	2	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	11	121000467	121000467	A	T	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	1	known	missense	c.2488	p.I830L	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	61	0	0	32	36	52.94	-	-	-	T	121000467	A	T	121000467	3	4	941	1	0	0	0	0	1	0	0	0	15842	217	8	5	2522	5	TECTA	11	121000467	Missense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	5898304	121000467	14006049	50	75611										
GUCY2C	0	genome.wustl.edu	37	chr12	14829904	14829904	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	attgtcctcaaagtactggtCactgtaataaaaagcacagg	8	8	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	14829904	14829904	C	T	SNP	GUCY2C	ENST00000261170	human	ensembl	69_37n	-1	known	missense	c.832	p.D278N	0.527	pfam_ANF_lig-bd_rcpt	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	48	0	0	48	17	26.15	-	-	-	T	14829904	C	T	14829904	3	4	941	1	0	0	0	0	1	0	0	0	6947	840	29	2	2473	2	GUCY2C	12	14829904	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		14829904	119021991	51	75612										
SLC2A13	0	genome.wustl.edu	37	chr12	40158269	40158269	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aatattatcttaccatagtaTgtaagatactctgctgtgtg	7	6	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	40158269	40158269	T	C	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	silent	c.1713	p.T571	0.997	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	37	0	0	56	16	22.22	-	-	-	C	40158269	T	C	40158269	2	2	941	1	0	0	0	0	0	0	0	1	14631	1451	51	5		5	SLC2A13	12	40158269	Silent	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	25328365	40158269	93693626	52	75613										
SP1	0	genome.wustl.edu	37	chr12	53776138	53776138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tggcagcaatggcagtgagtCttccaagaatcgcacagtct	11	10	2	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	53776138	53776138	C	G	SNP	SP1	ENST00000327443	human	ensembl	69_37n	1	known	missense	c.407	p.S136C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	27	0	0	44	7	13.73	-	-	-	G	53776138	C	G	53776138	3	3	941	1	0	0	0	0	1	0	0	0	15048	913	32	2	417	2	SP1	12	53776138	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	13617869	53776138	80075757	53	75614										
LGR5	0	genome.wustl.edu	37	chr12	71898466	71898466	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ctccgcttcctggaggagttGtaagtatcactgtagtcttg	11	9	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	71898466	71898466	G	T	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	1	known	splice_site	c.284+1	e2+1	1.000	-	-	-	no_errors	LGR5	HGNC	ENSG00000139292	58	0	0	83	12	12.63	-	-	-	T	71898466	G	T	71898466	5	4	941	1	0	0	0	0	0	0	1	0	8812	1391	48	4	291	4	LGR5	12	71898466	Splice_Site	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	18122328	71898466	61953429	54	75615										
TPH2	0	genome.wustl.edu	37	chr12	72355404	72355404	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgtatcaagttctttgagctCaagctccttgtgtatgttga	9	7	3	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	72355404	72355404	C	G	SNP	TPH2	ENST00000546576	human	ensembl	69_37n	1	known	nonsense	c.680	p.S227*	0.000	NULL	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C	-	no_errors	TPH2	HGNC	ENSG00000139287	78	0	0	104	20	16.13	-	-	-	G	72355404	C	G	72355404	4	3	941	1	0	0	0	0	0	1	0	0	16498	841	29	2		2	TPH2	12	72355404	Nonsense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	456938	72355404	61496491	55	75616										
CCDC41	0	genome.wustl.edu	37	chr12	94729586	94729586	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	acttcaagaaactaggttgtGttcacgtataacaaaaatgt	7	6	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	94729586	94729586	G	A	SNP	CCDC41	ENST00000546587	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC41	HGNC	ENSG00000173588	8	0	0	2	5	71.43	-	-	-	A	94729586	G	A	94729586	1	1	941	0	1	0	0	0	0	0	0	0	2839	1392	48	4		4	CCDC41	12	94729586	RNA	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	22374182	94729586	39122309	56	75617										
PIWIL1	0	genome.wustl.edu	37	chr12	130839167	130839167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gggccctggggggacactgcCagggcctgccatgctcattc	15	14	1	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	12	130839167	130839167	C	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.1130	p.P377Q	0.917	pfam_PAZ,superfamily_PAZ,smart_PAZ,pfscan_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	45	0	0	26	29	52.73	-	-	-	A	130839167	C	A	130839167	3	1	941	1	0	0	0	0	1	0	0	0	12031	594	21	4	1164	4	PIWIL1	12	130839167	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	36109581	130839167	3012728	57	75618										
FRY	0	genome.wustl.edu	37	chr13	32811953	32811953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cgataaggctgagaaccgagAaaagcttgagaaactccagg	12	8	0	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	13	32811953	32811953	A	G	SNP	FRY	ENST00000380250	human	ensembl	69_37n	1	known	missense	c.6248	p.E2083G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	13	0	0	24	22	47.83	-	-	-	G	32811953	A	G	32811953	3	3	941	1	0	0	0	0	1	0	0	0	6112	246	9	5	6422	5	FRY	13	32811953	Missense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09		32811953	82357925	58	75619										
DCAF11	0	genome.wustl.edu	37	chr14	24590084	24590084	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gatctccaactctaaagaccAgaccatcaaactctgggata	6	12	4	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	14	24590084	24590084	A	G	SNP	DCAF11	ENST00000446197	human	ensembl	69_37n	1	known	missense	c.1130	p.Q377R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	36	0	0	57	7	10.94	-	-	-	G	24590084	A	G	24590084	3	3	941	1	0	0	0	0	1	0	0	0	4294	188	7	5	1172	5	DCAF11	14	24590084	Missense_Mutation	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09		24590084	82759456	59	75620										
TRIP11	0	genome.wustl.edu	37	chr14	92474126	92474126	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	attctgaatccaaacttatgTctcttgtagctgtactttta	5	8	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	14	92474126	92474126	T	C	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.1385	p.D462G	0.002	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	70	0	0	30	61	67.03	-	-	-	C	92474126	T	C	92474126	3	2	941	1	0	0	0	0	1	0	0	0	16651	1667	58	5	4602	5	TRIP11	14	92474126	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	67884042	92474126	14875414	60	75621										
ALDH1A2	0	genome.wustl.edu	37	chr15	58284996	58284996	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tatcctggcaaaatattgatGaccccgggaggaaagccagc	11	10	0	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	15	58284996	58284996	G	T	SNP	ALDH1A2	ENST00000249750	human	ensembl	69_37n	-1	known	silent	c.705	p.V235	0.986	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918	30	0	0	59	18	23.38	-	-	-	T	58284996	G	T	58284996	2	4	941	1	0	0	0	0	0	0	0	1	491	1277	45	2		2	ALDH1A2	15	58284996	Silent	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		58284996	44246396	61	75622										
DENND4A	0	genome.wustl.edu	37	chr15	65960402	65960402	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	atttagacatagctgtttttGatctattagcagggatctga	9	5	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	15	65960402	65960402	G	C	SNP	DENND4A	ENST00000443035	human	ensembl	69_37n	-1	known	nonsense	c.4844	p.S1615*	0.999	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485	60	0	0	65	20	23.53	-	-	-	C	65960402	G	C	65960402	4	2	941	1	0	0	0	0	0	1	0	0	4469	1294	45	2	900	2	DENND4A	15	65960402	Nonsense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	7675406	65960402	36570990	62	75623										
ACSM2A	0	genome.wustl.edu	37	chr16	20492197	20492197	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	actgatggagcaccctgctgTggttgagacggctgtgatca	14	9	1	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	16	20492197	20492197	T	C	SNP	ACSM2A	ENST00000219054	human	ensembl	69_37n	1	known	missense	c.1463	p.V488A	0.796	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747	57	0	0	66	10	12.99	-	-	-	C	20492197	T	C	20492197	3	2	941	1	0	0	0	0	1	0	0	0	183	1696	59	5	1505	5	ACSM2A	16	20492197	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09		20492197	69862556	63	75624										
C16orf78	0	genome.wustl.edu	37	chr16	49430463	49430463	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ccagagggcaaccttcataaGagactggtccaacaagatgc	10	11	1	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	16	49430463	49430463	G	A	SNP	C16orf78	ENST00000299191	human	ensembl	69_37n	1	known	missense	c.524	p.R175K	0.175	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152	32	0	0	37	17	31.48	-	-	-	A	49430463	G	A	49430463	3	1	941	1	0	0	0	0	1	0	0	0	1848	942	33	2	538	2	C16orf78	16	49430463	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	28938266	49430463	40924290	64	75625										
DEF8	0	genome.wustl.edu	37	chr16	90030911	90030911	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cttcgtgtgtgagctctgcaGagagggcgacgtgctgttcc	15	10	1	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	16	90030911	90030911	G	A	SNP	DEF8	ENST00000268676	human	ensembl	69_37n	1	known	missense	c.1364	p.R455K	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DEF8	HGNC	ENSG00000140995	54	0	0	78	23	22.77	-	-	-	A	90030911	G	A	90030911	3	1	941	1	0	0	0	0	1	0	0	0	4418	942	33	2	1486	2	DEF8	16	90030911	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	40600448	90030911	323842	65	75626										
TP53	0	genome.wustl.edu	37	chr17	7578462	7578464	+	In_Frame_Del	DEL	GCG	GCG	-													0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tagatggccatggcgcggacGcgggtgccgggcgggggtgt							TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	17	7578462	7578464	GCG	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.468_466	p.R156in_frame_del	0.000:0.019:0.010	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	29	0	0	19	14	42.42	-	-	-	-	7578464	GCG	-	7578462	7	5	941	1	0	1	0	1	0	0	0	0	16477	1074	38	0	830	0	TP53	17	7578462	In_Frame_Del	DEL	GCG	TCGA-GM-A3XL-01A-11D-A22X-09		7578462	73616748	66	75627										
DNAH9	0	genome.wustl.edu	37	chr17	11593039	11593039	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cagtgcaggaaggaggtctgCcagctgaaggagctctggga	17	8	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	17	11593039	11593039	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.3900	p.C1300W	0.060	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	22	0	0	16	26	60.47	-	-	-	G	11593039	C	G	11593039	3	3	941	1	0	0	0	0	1	0	0	0	4643	747	26	4	3978	4	DNAH9	17	11593039	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	4014577	11593039	69602171	67	75628										
ACE	0	genome.wustl.edu	37	chr17	61557696	61557696	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tacctcacccccacgcccccAggcttcacagacacgggggc	9	20	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	17	61557696	61557696	A	T	SNP	ACE	ENST00000290866	human	ensembl	69_37n	1	known	splice_site	c.656-2	e5-2	0.990	-	-	-	no_errors	ACE	HGNC	ENSG00000159640	50	0	0	96	26	21.31	-	-	-	T	61557696	A	T	61557696	5	4	941	1	0	0	0	0	0	0	1	0	136	202	7	5	672	5	ACE	17	61557696	Splice_Site	SNP	A	TCGA-GM-A3XL-01A-11D-A22X-09	49964657	61557696	19637514	68	75629										
AANAT	0	genome.wustl.edu	37	chr17	74466051	74466051	+	Nonstop_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gcgcaggaacagcggctgctGaactgggctgcccacctggc	15	14	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	17	74466051	74466051	G	T	SNP	AANAT	ENST00000250615	human	ensembl	69_37n	1	known	nonstop	c.758	p.*253L	0.105	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	AANAT	HGNC	ENSG00000129673	63	0	0	67	39	36.79	-	-	-	T	74466051	G	T	74466051	4	4	941	1	0	0	0	0	0	0	0	0	18	1285	45	2	772	2	AANAT	17	74466051	Nonstop_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	12908355	74466051	6729159	69	75630										
ASXL3	0	genome.wustl.edu	37	chr18	31314329	31314329	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	caagaaattgagaaggaaaaGaaaacagaaccttggaaaga	10	4	0	5			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	18	31314329	31314329	G	C	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.1032	p.K344N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	35	0	0	47	16	25	-	-	-	C	31314329	G	C	31314329	3	2	941	1	0	0	0	0	1	0	0	0	1072	933	33	2	1070	2	ASXL3	18	31314329	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		31314329	46762919	70	75631										
STARD6	0	genome.wustl.edu	37	chr18	51858148	51858148	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	atttccttcgtagcgcttgaTgtacactaagtcgataaagt	8	8	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	18	51858148	51858148	T	C	SNP	STARD6	ENST00000307844	human	ensembl	69_37n	-1	known	missense	c.349	p.I117V	0.023	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD6	HGNC	ENSG00000174448	54	0	0	65	26	28.57	-	-	-	C	51858148	T	C	51858148	3	2	941	1	0	0	0	0	1	0	0	0	15352	1464	51	5	324	5	STARD6	18	51858148	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	20543819	51858148	26219100	71	75632										
IL29	0	genome.wustl.edu	37	chr19	39789125	39789125	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ggccgatgggaacctgtgtcTgagaacgtcaacccaccctg	12	13	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	19	39789125	39789125	T	G	SNP	IL29	ENST00000333625	human	ensembl	69_37n	1	known	missense	c.572	p.L191R	0.008	NULL	NULL	-	no_errors	IL29	HGNC	ENSG00000182393	90	0	0	131	16	10.88	-	-	-	G	39789125	T	G	39789125	3	3	941	1	0	0	0	0	1	0	0	0	7739	1580	55	5	590	5	IL29	19	39789125	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09		39789125	19339858	72	75633										
KLC3	0	genome.wustl.edu	37	chr19	45851372	45851372	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	agcgcagctcgggccactgcCaccctgacgtggccaccatg	12	17	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	19	45851372	45851372	C	G	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	1	known	missense	c.775	p.H259D	1.000	pfam_Rabaptin_Rab5-bd_dom,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	78	0	0	68	25	26.88	-	-	-	G	45851372	C	G	45851372	3	3	941	1	0	0	0	0	1	0	0	0	8388	594	21	4	747	4	KLC3	19	45851372	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	6062247	45851372	13277611	73	75634										
PTPRA	0	genome.wustl.edu	37	chr20	2985753	2985753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtgaggctgcttccaaggagGaaaacaaggaaaaaaatcga	12	6	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	20	2985753	2985753	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	69_37n	1	known	missense	c.823	p.E275K	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670	95	0	0	116	30	20.55	-	-	-	A	2985753	G	A	2985753	3	1	941	1	0	0	0	0	1	0	0	0	12878	1175	41	2	816	2	PTPRA	20	2985753	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		2985753	60039767	74	75635										
SIGLEC1	0	genome.wustl.edu	37	chr20	3673310	3673310	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tcctgcagccaacgaccgttGtggtaccaagtatagagtgt	11	10	0	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	20	3673310	3673310	G	A	SNP	SIGLEC1	ENST00000419548	human	ensembl	69_37n	-1	known	nonsense	c.328	p.Q110*	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub2,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIGLEC1	HGNC	ENSG00000088827	62	0	0	54	34	38.64	-	-	-	A	3673310	G	A	3673310	4	1	941	1	0	0	0	0	0	1	0	0	14394	1368	48	4	1269	4	SIGLEC1	20	3673310	Nonsense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	687557	3673310	59352210	75	75636										
C20orf26	0	genome.wustl.edu	37	chr20	20269404	20269404	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgctggctccctcaccaaatTctccaatagatactactcaa	4	14	3	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	20	20269404	20269404	T	A	SNP	C20orf26	ENST00000245957	human	ensembl	69_37n	1	known	missense	c.2948	p.F983Y	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101	45	0	0	43	31	41.89	-	-	-	A	20269404	T	A	20269404	3	1	941	1	0	0	0	0	1	0	0	0	2126	1783	62	5	3066	5	C20orf26	20	20269404	Missense_Mutation	SNP	T	TCGA-GM-A3XL-01A-11D-A22X-09	16596094	20269404	42756116	76	75637										
CEP250	0	genome.wustl.edu	37	chr20	34084421	34084421	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tttagcctgactctgtcactGatggaaaaggaacagagact	10	8	2	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	20	34084421	34084421	G	C	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.3183	p.L1061	0.986	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	18	0	0	40	25	38.46	-	-	-	C	34084421	G	C	34084421	2	2	941	1	0	0	0	0	0	0	0	1	3281	1277	45	2		2	CEP250	20	34084421	Silent	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	13815017	34084421	28941099	77	75638										
TIAM1	0	genome.wustl.edu	37	chr21	32638444	32638444	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gtgtgttataattactgtacGgaggagtctcttcagcagca	11	7	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	21	32638444	32638444	G	C	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.845	p.P282R	0.092	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	78	0	0	94	20	17.54	-	-	-	C	32638444	G	C	32638444	3	2	941	1	0	0	0	0	1	0	0	0	15985	1116	39	3	4030	3	TIAM1	21	32638444	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09		32638444	15491451	78	75639										
SLC5A3	0	genome.wustl.edu	37	chr21	35469199	35469199	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aagaggaaccataccaaatgCaagaaaagagcattctgaga	9	7	1	4			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	21	35469199	35469199	C	A	SNP	SLC5A3	ENST00000381151	human	ensembl	69_37n	1	known	missense	c.1702	p.Q568K	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	32	0	0	41	11	21.15	-	-	-	A	35469199	C	A	35469199	3	1	941	1	0	0	0	0	1	0	0	0	14755	711	25	4	1704	4	SLC5A3	21	35469199	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	2830755	35469199	12660696	79	75640										
HSF2BP	0	genome.wustl.edu	37	chr21	45050302	45050302	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	cacaaaactctccattgtttGaccagtgatgctgaaaaact	6	10	1	3			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	21	45050302	45050302	G	C	SNP	HSF2BP	ENST00000291560	human	ensembl	69_37n	-1	known	missense	c.475	p.Q159E	0.716	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207	35	0	0	33	10	23.26	-	-	-	C	45050302	G	C	45050302	3	2	941	1	0	0	0	0	1	0	0	0	7448	1299	45	2	545	2	HSF2BP	21	45050302	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	9581103	45050302	3079593	80	75641										
KRTAP10-3	0	genome.wustl.edu	37	chr21	45978529	45978529	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	ggggggctcacagcagctctCtgggcaggcgtccacctgcc	15	15	2	0			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	21	45978529	45978529	C	T	SNP	KRTAP10-3	ENST00000391620	human	ensembl	69_37n	-1	known	missense	c.70	p.E24K	1.000	NULL	NULL	-	no_errors	KRTAP10-3	HGNC	ENSG00000212935	63	0	0	76	11	12.64	-	-	-	T	45978529	C	T	45978529	3	4	941	1	0	0	0	0	1	0	0	0	8563	922	32	2	599	2	KRTAP10-3	21	45978529	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09	928227	45978529	2151366	81	75642										
CCDC120	0	genome.wustl.edu	37	chrX	48922006	48922006	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	atctgagcaccgagcagcgcCggcgccggcgccaggtccag	15	16	1	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	X	48922006	48922006	C	G	SNP	CCDC120	ENST00000422185	human	ensembl	69_37n	1	known	missense	c.430	p.R144G	0.981	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	22	0	0	25	8	24.24	-	-	-	G	48922006	C	G	48922006	3	3	941	1	0	0	0	0	1	0	0	0	2781	643	23	3	444	3	CCDC120	23	48922006	Missense_Mutation	SNP	C	TCGA-GM-A3XL-01A-11D-A22X-09		48922006	106348554	82	75643										
SLC16A2	0	genome.wustl.edu	37	chrX	73744433	73744433	+	Frame_Shift_Del	DEL	T	T	-													0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	gctgagtaccttcatgtttgTtcttatgctgctttcactca							TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	X	73744433	73744433	T	-	DEL	SLC16A2	ENST00000276033	human	ensembl	69_37n	1	known	frame_shift_del	c.1037	p.M348fs	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100	98	0	0	92	40	30.3	-	-	-	-	73744433	T	-	73744433	7	5	941	1	0	1	0	1	0	0	0	0	14497	1725	60	0	1047	0	SLC16A2	23	73744433	Frame_Shift_Del	DEL	T	TCGA-GM-A3XL-01A-11D-A22X-09	24822427	73744433	81526127	83	75644										
SAGE1	0	genome.wustl.edu	37	chrX	134993474	134993474	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	aggagctggtatttcatgcaGaagtaccagggatctgtgta	13	6	2	1			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	X	134993474	134993474	G	C	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	1	known	missense	c.2129	p.R710T	0.002	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	54	0	0	68	32	32	-	-	-	C	134993474	G	C	134993474	3	2	941	1	0	0	0	0	1	0	0	0	13895	942	33	2	2191	2	SAGE1	23	134993474	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	61249041	134993474	20277086	84	75645										
SLC6A8	0	genome.wustl.edu	37	chrX	152956984	152956984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	17	0.00588707616033001	2.24175824175824	2.79365079365079	1.64571428571429	0.200287272812301	0.776190476190475	9	tgaccagcttgctgaccgccGgtcccctgtcatcgagttct	10	15	2	2			TCGA-GM-A3XL-01A-11D-A22X-09	TCGA-GM-A3XL-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b27d75ba-5989-4200-bfe9-f1b7d7cf8008	90469bfb-140c-4856-be28-a9b04c183157	X	152956984	152956984	G	A	SNP	SLC6A8	ENST00000253122	human	ensembl	69_37n	1	known	missense	c.620	p.R207Q	0.998	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_creatine	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine	-	no_errors	SLC6A8	HGNC	ENSG00000130821	69	0	0	105	32	23.36	-	-	-	A	152956984	G	A	152956984	3	1	941	1	0	0	0	0	1	0	0	0	14779	1116	39	1	630	1	SLC6A8	23	152956984	Missense_Mutation	SNP	G	TCGA-GM-A3XL-01A-11D-A22X-09	17963510	152956984	2313576	85	75646										
TRIM43	0	genome.wustl.edu	37	chr2	96265165	96265165	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	tccccagtgtttcctcactaCatagagaaacctctgggccg	8	14	2	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	2	96265165	96265165	C	T	SNP	TRIM43	ENST00000272395	human	ensembl	69_37n	1	known	silent	c.1185	p.Y395	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM43	HGNC	ENSG00000144015	8	0	0	8	11	57.89	-	-	-	T	96265165	C	T	96265165	2	4	942	1	0	0	0	0	0	0	0	1	16614	489	17	4		4	TRIM43	2	96265165	Silent	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		96265165	146934208	1	75647										
TTL	0	genome.wustl.edu	37	chr2	113288949	113288949	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	gtatcagaggagcctgttaaCctctctgtgccttagtttct	9	10	3	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	2	113288949	113288949	C	A	SNP	TTL	ENST00000460450	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	TTL	HGNC	ENSG00000114999	53	0	0	87	19	17.92	-	-	-	A	113288949	C	A	113288949	1	1	942	0	1	0	0	0	0	0	0	0	16818	522	18	4		4	TTL	2	113288949	RNA	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09	17023784	113288949	129910424	2	75648										
SLITRK3	0	genome.wustl.edu	37	chr3	164907426	164907426	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	gaagaagttcagaaatgttaTtaaatcctcgctctttgcag	8	7	2	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	3	164907426	164907426	T	C	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	missense	c.1193	p.N398S	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	59	0	0	108	14	11.48	-	-	-	C	164907426	T	C	164907426	3	2	942	1	0	0	0	0	1	0	0	0	14833	1493	52	5	1744	5	SLITRK3	3	164907426	Missense_Mutation	SNP	T	TCGA-GM-A3XN-01A-12D-A22X-09		164907426	33115004	3	75649										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	33	0	0	36	7	15.56	-	-	-	T	178952085	A	T	178952085	3	4	942	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-GM-A3XN-01A-12D-A22X-09	14044659	178952085	19070345	4	75650										
FAT1	0	genome.wustl.edu	37	chr4	187540196	187540196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	cagaatccccatccgtagttTtcacctccatcaccagggta	6	15	2	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	4	187540196	187540196	T	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.7544	p.K2515R	0.601	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	39	0	0	72	20	21.74	-	-	-	C	187540196	T	C	187540196	3	2	942	1	0	0	0	0	1	0	0	0	5735	1841	64	5	6294	5	FAT1	4	187540196	Missense_Mutation	SNP	T	TCGA-GM-A3XN-01A-12D-A22X-09		187540196	3614080	5	75651										
APBB3	0	genome.wustl.edu	37	chr5	139943219	139943219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	caggctggagaaggatctccCtttggggggccgcagtcccc	15	13	1	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	5	139943219	139943219	C	T	SNP	APBB3	ENST00000356738	human	ensembl	69_37n	-1	known	missense	c.250	p.G84R	0.983	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB3	HGNC	ENSG00000113108	50	0	0	127	16	11.11	-	-	-	T	139943219	C	T	139943219	3	4	942	1	0	0	0	0	1	0	0	0	763	681	24	4	1271	4	APBB3	5	139943219	Missense_Mutation	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		139943219	40972041	6	75652										
MED23	0	genome.wustl.edu	37	chr6	131946081	131946081	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	aattcttttaggactatgctGaccatgaataaacttaacaa	5	7	1	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	6	131946081	131946081	G	A	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	nonsense	c.208	p.Q70*	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	46	0	0	50	17	25	-	-	-	A	131946081	G	A	131946081	4	1	942	1	0	0	0	0	0	1	0	0	9512	1299	45	2	4031	2	MED23	6	131946081	Nonsense_Mutation	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09		131946081	39168986	7	75653										
SFXN4	0	genome.wustl.edu	37	chr10	120921865	120921865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	aacataccctttggtccgccGaggcagggctggaaacatct	11	12	1	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	10	120921865	120921865	G	A	SNP	SFXN4	ENST00000355697	human	ensembl	69_37n	-1	known	missense	c.239	p.S80L	0.000	pfam_Mtc	pfam_Mtc	-	no_errors	SFXN4	HGNC	ENSG00000183605	79	0	0	97	23	19.01	-	-	-	A	120921865	G	A	120921865	3	1	942	1	0	0	0	0	1	0	0	0	14285	1059	37	1	822	1	SFXN4	10	120921865	Missense_Mutation	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09		120921865	14612882	8	75654										
DPYSL4	0	genome.wustl.edu	37	chr10	134006321	134006321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	tgtcagggcaccaaggcagcGctagcaggaggaaccaccat	13	12	1	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	10	134006321	134006321	G	A	SNP	DPYSL4	ENST00000338492	human	ensembl	69_37n	1	known	silent	c.288	p.A96	0.068	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640	44	0	0	59	20	25.32	-	-	-	A	134006321	G	A	134006321	2	1	942	1	0	0	0	0	0	0	0	1	4784	1074	38	1		1	DPYSL4	10	134006321	Silent	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09	13084456	134006321	1528426	9	75655										
NRXN2	0	genome.wustl.edu	37	chr11	64453251	64453251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	agacagccccagacttgaggGacaggttgacgtagtcggcc	14	11	0	4			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	11	64453251	64453251	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.1019	p.S340F	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	113	0	0	165	35	17.41	-	-	-	A	64453251	G	A	64453251	3	1	942	1	0	0	0	0	1	0	0	0	10739	1174	41	2	4460	2	NRXN2	11	64453251	Missense_Mutation	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09		64453251	70553265	10	75656										
CDC16	0	genome.wustl.edu	37	chr13	115011252	115011252	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	gctgtatcctctgcagtattCgggaagtgctgtcttagggg	14	8	2	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	13	115011252	115011252	C	T	SNP	CDC16	ENST00000494581	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC16	HGNC	ENSG00000130177	10	0	0	11	10	47.62	-	-	-	T	115011252	C	T	115011252	1	4	942	0	1	0	0	0	0	0	0	0	3087	899	31	1		1	CDC16	13	115011252	RNA	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		115011252	158626	11	75657										
NDUFB1	0	genome.wustl.edu	37	chr14	92587733	92587733	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	ccggttagcgggcggtcactGggtcacatctctacggacgt	14	12	3	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	14	92587733	92587733	G	C	SNP	NDUFB1	ENST00000556555	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	NDUFB1	HGNC	ENSG00000183648	10	0	0	5	4	44.44	-	-	-	C	92587733	G	C	92587733	1	2	942	0	1	0	0	0	0	0	0	0	10350	1363	47	4		4	NDUFB1	14	92587733	RNA	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09		92587733	14761807	12	75658										
CDH1	0	genome.wustl.edu	37	chr16	68835599	68835600	+	Frame_Shift_Ins	INS	-	-	A													0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	tgaagattgcaccggtcgacINSaaaggacagcctatttttcc							TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	16	68835599	68835600	-	A	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.190_191	p.R65fs	0.036:0.025	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	54	0	0	72	10	12.2	-	-	-	A	68835600	-	A	68835599	7	5	942	1	0	1	1	0	0	0	0	0	3124	479	17	0	200	0	CDH1	16	68835599	Frame_Shift_Ins	INS	-	TCGA-GM-A3XN-01A-12D-A22X-09		68835599	21519154	13	75659										
ANKFY1	0	genome.wustl.edu	37	chr17	4080476	4080476	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	cagcgaggtgcaggggggtcAacttggaggcatcctggact	17	9	1	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	17	4080476	4080476	A	T	SNP	ANKFY1	ENST00000570535	human	ensembl	69_37n	-1	known	nonsense	c.2846	p.L949*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	70	0	0	93	28	23.14	-	-	-	T	4080476	A	T	4080476	4	4	942	1	0	0	0	0	0	1	0	0	626	131	5	5	817	5	ANKFY1	17	4080476	Nonsense_Mutation	SNP	A	TCGA-GM-A3XN-01A-12D-A22X-09		4080476	77114734	14	75660										
TRAF4	0	genome.wustl.edu	37	chr17	27075546	27075546	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	cagagccaccagtaccagtgCccaaggctgcctgttgcctg	11	15	0	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	17	27075546	27075546	C	T	SNP	TRAF4	ENST00000262395	human	ensembl	69_37n	1	known	silent	c.642	p.C214	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604	83	0	0	130	26	16.67	-	-	-	T	27075546	C	T	27075546	2	4	942	1	0	0	0	0	0	0	0	1	16539	747	26	4		4	TRAF4	17	27075546	Silent	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09	22995070	27075546	54119664	15	75661										
PPP4R1	0	genome.wustl.edu	37	chr18	9550110	9550110	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	ggacatctgccaaagttctcCacaagctcattgatgaggtc	9	11	3	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	18	9550110	9550110	C	T	SNP	PPP4R1	ENST00000400556	human	ensembl	69_37n	-1	known	silent	c.2487	p.V829	0.575	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R1	HGNC	ENSG00000154845	78	0	0	151	25	14.2	-	-	-	T	9550110	C	T	9550110	2	4	942	1	0	0	0	0	0	0	0	1	12480	581	21	4		4	PPP4R1	18	9550110	Silent	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		9550110	68527138	16	75662										
ZBTB7C	0	genome.wustl.edu	37	chr18	45567396	45567396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	cacacagcaggccatcgtgcCgttgctcattgaggctgcac	11	14	1	1			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	18	45567396	45567396	C	T	SNP	ZBTB7C	ENST00000332053	human	ensembl	69_37n	-1	known	missense	c.83	p.R28Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828	37	0	0	63	8	11.27	-	-	-	T	45567396	C	T	45567396	3	4	942	1	0	0	0	0	1	0	0	0	17651	652	23	1	1784	1	ZBTB7C	18	45567396	Missense_Mutation	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09	36017286	45567396	32509852	17	75663										
GEMIN7	0	genome.wustl.edu	37	chr19	45593382	45593382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	cagccaagacaatgcaaactCcagtgaacattcccgtgcct	7	14	0	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	19	45593382	45593382	C	A	SNP	GEMIN7	ENST00000270257	human	ensembl	69_37n	1	known	missense	c.10	p.P4T	0.096	NULL	pfam_SMN_gemin7	-	no_errors	GEMIN7	HGNC	ENSG00000142252	117	0	0	191	41	17.52	-	-	-	A	45593382	C	A	45593382	3	1	942	1	0	0	0	0	1	0	0	0	6385	855	30	2	12	2	GEMIN7	19	45593382	Missense_Mutation	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		45593382	13535601	18	75664										
EFCAB6	0	genome.wustl.edu	37	chr22	44127685	44127685	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	ttgtggatgttgtagtgtttCgaaaacctaaaatacaaatg	9	4	0	0			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	22	44127685	44127685	C	T	SNP	EFCAB6	ENST00000262726	human	ensembl	69_37n	-1	known	silent	c.651	p.S217	0.001	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFCAB6	HGNC	ENSG00000186976	35	0	0	51	21	29.17	-	-	-	T	44127685	C	T	44127685	2	4	942	1	0	0	0	0	0	0	0	1	4974	871	31	1		1	EFCAB6	22	44127685	Silent	SNP	C	TCGA-GM-A3XN-01A-12D-A22X-09		44127685	7176881	19	75665										
GPR50	0	genome.wustl.edu	37	chrX	150348960	150348960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.05	1	0.994628167771038	0.647435897435897	0	0.701388888888889	1	1	0	gctcctcaatgagaatttccGaagagaatactggaccatct	8	10	2	2			TCGA-GM-A3XN-01A-12D-A22X-09	TCGA-GM-A3XN-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdb932c-cf13-4b20-be5b-b33061e50a01	63229112-0438-4c3d-99f0-1120430c5c66	X	150348960	150348960	G	A	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	1	known	missense	c.905	p.R302Q	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	63	0	0	72	29	28.71	-	-	-	A	150348960	G	A	150348960	3	1	942	1	0	0	0	0	1	0	0	0	6747	1058	37	1	911	1	GPR50	23	150348960	Missense_Mutation	SNP	G	TCGA-GM-A3XN-01A-12D-A22X-09		150348960	4921600	20	75666										
UROD	0	genome.wustl.edu	37	chr1	45480829	45480829	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	aagaccggactttttgttgcTgttgttcatttgtgtttatg	10	5	1	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	1	45480829	45480829	T	C	SNP	UROD	ENST00000465678	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UROD	HGNC	ENSG00000126088	35	0	0	14	3	17.65	-	-	-	C	45480829	T	C	45480829	1	2	943	0	1	0	0	0	0	0	0	0	17126	1595	55	5		5	UROD	1	45480829	RNA	SNP	T	TCGA-GM-A4E0-01A-12D-A25Q-09		45480829	203769792	1	75667										
FLG	0	genome.wustl.edu	37	chr1	152283588	152283588	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	tgcctgcttgtcctggacccCgatgattgttcctgtcccac	9	15	0	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	1	152283588	152283588	C	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	silent	c.3774	p.S1258	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	327	0	0	217	65	22.97	-	-	-	T	152283588	C	T	152283588	2	4	943	1	0	0	0	0	0	0	0	1	5968	639	23	1		1	FLG	1	152283588	Silent	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09	106802759	152283588	96967033	2	75668										
ATG9A	0	genome.wustl.edu	37	chr2	220087423	220087423	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gagggcattttcagggagcaGacccccttgggcgaggctag	16	10	1	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	2	220087423	220087423	G	T	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	missense	c.1792	p.L598M	0.583	NULL	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	64	0	0	51	9	15	-	-	-	T	220087423	G	T	220087423	3	4	943	1	0	0	0	0	1	0	0	0	1106	933	33	2	751	2	ATG9A	2	220087423	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		220087423	23111950	3	75669										
QARS	0	genome.wustl.edu	37	chr3	49141350	49141350	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cccacgccacattcccgctcGaagtccacagtgtcgatggg	10	16	0	0			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	3	49141350	49141350	G	T	SNP	QARS	ENST00000418549	human	ensembl	69_37n	-1	known	nonsense	c.272	p.S91*	1.000	NULL	pfam_Gln-tRNA-synth_Ib_RNA-bd_N	-	no_errors	QARS	HGNC	ENSG00000172053	46	0	0	25	6	19.35	-	-	-	T	49141350	G	T	49141350	4	4	943	1	0	0	0	0	0	1	0	0	12954	1049	37	3	2094	3	QARS	3	49141350	Nonsense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		49141350	148881080	4	75670										
ADAMTS6	0	genome.wustl.edu	37	chr5	64593049	64593049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggcgattcatgaaccacttaTtgaatcaccgagtttaagaa	8	8	2	3			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	5	64593049	64593049	T	C	SNP	ADAMTS6	ENST00000536360	human	ensembl	69_37n	-1	known	missense	c.1393	p.I465V	1.000	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	68	0	0	33	7	17.5	-	-	-	C	64593049	T	C	64593049	3	2	943	1	0	0	0	0	1	0	0	0	270	1508	52	5		5	ADAMTS6	5	64593049	Missense_Mutation	SNP	T	TCGA-GM-A4E0-01A-12D-A25Q-09		64593049	116322211	5	75671										
FRS3	0	genome.wustl.edu	37	chr6	41738550	41738550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggttctggggccccttagggCggtctccaccccagcccttt	12	16	2	0			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	6	41738550	41738550	C	T	SNP	FRS3	ENST00000259748	human	ensembl	69_37n	-1	known	missense	c.1286	p.R429H	0.966	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218	44	0	0	39	5	11.36	-	-	-	T	41738550	C	T	41738550	3	4	943	1	0	0	0	0	1	0	0	0	6111	768	27	1	196	1	FRS3	6	41738550	Missense_Mutation	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09		41738550	129376517	6	75672										
SUPT3H	0	genome.wustl.edu	37	chr6	44922335	44922335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	accagtctcgaaatttggaaGcttttttggctggccattta	9	8	1	0			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	6	44922335	44922335	G	A	SNP	SUPT3H	ENST00000371460	human	ensembl	69_37n	-1	known	missense	c.623	p.A208V	1.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284	86	0	0	51	10	16.39	-	-	-	A	44922335	G	A	44922335	3	1	943	1	0	0	0	0	1	0	0	0	15488	971	34	4	379	4	SUPT3H	6	44922335	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09	3183785	44922335	126192732	7	75673										
STK31	0	genome.wustl.edu	37	chr7	23827646	23827646	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gcccagggtctgcatacattGcataaggctgacataattca	9	10	2	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	7	23827646	23827646	G	T	SNP	STK31	ENST00000355870	human	ensembl	69_37n	1	known	missense	c.2535	p.L845F	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	109	0	0	57	9	13.64	-	-	-	T	23827646	G	T	23827646	3	4	943	1	0	0	0	0	1	0	0	0	15387	1310	46	4	2617	4	STK31	7	23827646	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		23827646	135311017	8	75674										
ADAMTSL1	0	genome.wustl.edu	37	chr9	18574056	18574056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	accagaagcaggtgatttccGagctcagcaatgctcagctc	10	12	2	2			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	9	18574056	18574056	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	1	known	missense	c.266	p.R89Q	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	142	1	0.7	85	10	10.53	-	-	-	A	18574056	G	A	18574056	3	1	943	1	0	0	0	0	1	0	0	0	274	1058	37	1	280	1	ADAMTSL1	9	18574056	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		18574056	122639375	9	75675										
PTEN	0	genome.wustl.edu	37	chr10	89717748	89717748	+	Missense_Mutation	SNP	T	T	A													0	0	1	0	NA	0	1	1	0	tgatatcaaagtagagttctTccacaaacagaacaagatgc							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	10	89717748	89717748	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.773	p.F258Y	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	90	0	0	57	28	32.56	-	-	-	A	89717748	T	A	89717748	3	1	943	1	0	0	0	0	1	0	0	0	12818	1783	62	5	799	5	PTEN	10	89717748	Missense_Mutation	SNP	T	TCGA-GM-A4E0-01A-12D-A25Q-09		89717748	45816999	10	75676	527	2								
PTEN	0	genome.wustl.edu	37	chr10	89717749	89717749	+	Missense_Mutation	SNP	C	C	A													0	0	1	0	NA	0	1	1	0	gatatcaaagtagagttcttCcacaaacagaacaagatgct							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	10	89717749	89717749	C	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.774	p.F258L	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	89	0	0	58	28	32.56	-	-	-	A	89717749	C	A	89717749	3	1	943	1	0	0	0	0	1	0	0	0	12818	854	30	2	800	2	PTEN	10	89717749	Missense_Mutation	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09	1	89717749	45816998	11	75677	527	2								
GDPD4	0	genome.wustl.edu	37	chr11	76969468	76969468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	NA	0	1	1	0	atttgcctgcattcagagtcGataggaaatcccagttgaag	10	8	1	2			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	11	76969468	76969468	G	A	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.827	p.S276L	0.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	88	0	0	54	11	16.92	-	-	-	A	76969468	G	A	76969468	3	1	943	1	0	0	0	0	1	0	0	0	6378	1059	37	1	763	1	GDPD4	11	76969468	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		76969468	58037048	12	75678										
MAML2	0	genome.wustl.edu	37	chr11	95712202	95712202	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ttcaataaagaatcaatgaaAtcagcatcactgtttagggc	7	7	4	2			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	11	95712202	95712202	A	G	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.3381	p.D1127	0.884	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	87	0	0	45	13	22.41	-	-	-	G	95712202	A	G	95712202	2	3	943	1	0	0	0	0	0	0	0	1	9277	98	4	5		5	MAML2	11	95712202	Silent	SNP	A	TCGA-GM-A4E0-01A-12D-A25Q-09	18742734	95712202	39294314	13	75679										
GAS6	0	genome.wustl.edu	37	chr13	114549506	114549506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggaggccgacttactttgcaCgcaggtggcgaagcctgagt	15	10	0	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	13	114549506	114549506	C	T	SNP	GAS6	ENST00000357389	human	ensembl	69_37n	-1	known	missense	c.337	p.V113M	0.331	NULL	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	106	0	0	42	7	14.29	-	-	-	T	114549506	C	T	114549506	3	4	943	1	0	0	0	0	1	0	0	0	6299	536	19	1	1747	1	GAS6	13	114549506	Missense_Mutation	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09		114549506	620372	14	75680										
SMG1	0	genome.wustl.edu	37	chr16	18893628	18893628	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggaggagggacatcttcatcCactgattccccagaggccac	11	13	2	2			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	16	18893628	18893628	C	A	SNP	SMG1	ENST00000561947	human	ensembl	69_37n	-1	novel	nonsense	c.904	p.G302*	0.992	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMG1	HGNC	ENSG00000157106	318	0	0	206	29	12.29	-	-	-	A	18893628	C	A	18893628	4	1	943	1	0	0	0	0	0	1	0	0	14884	581	21	4	10049	4	SMG1	16	18893628	Nonsense_Mutation	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09		18893628	71461125	15	75681										
CDH1	0	genome.wustl.edu	37	chr16	68842369	68842369	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	cagaattgctcacatttcccAactcctctcctggcctcaga							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	16	68842369	68842369	A	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.430	p.N144fs	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	136	0	0	83	15	15.15	-	-	-	-	68842369	A	-	68842369	7	5	943	1	0	1	0	1	0	0	0	0	3124	130	5	0	444	0	CDH1	16	68842369	Frame_Shift_Del	DEL	A	TCGA-GM-A4E0-01A-12D-A25Q-09	49948741	68842369	21512384	16	75682										
ZSWIM7	0	genome.wustl.edu	37	chr17	15897104	15897104	+	RNA	DEL	G	G	-													0	0	1	0	NA	0	1	1	0	catcaggaactgtaaaatgaGaatggaaaaaaaaagttaat							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	17	15897104	15897104	G	-	DEL	ZSWIM7	ENST00000475498	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941	30	0	0	8	2	20	-	-	-	-	15897104	G	-	15897104	6	5	943	0	1	1	0	1	0	0	0	0	18336	957	33	0		0	ZSWIM7	17	15897104	RNA	DEL	G	TCGA-GM-A4E0-01A-12D-A25Q-09		15897104	65298106	17	75683										
ABCA6	0	genome.wustl.edu	37	chr17	67080627	67080627	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ggaacattcagctgctcatgCagtttgaaagcactcactaa	8	10	3	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	17	67080627	67080627	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	69_37n	-1	known	silent	c.4206	p.L1402	0.939	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262	28	0	0	19	9	32.14	-	-	-	T	67080627	C	T	67080627	2	4	943	1	0	0	0	0	0	0	0	1	36	697	25	4		4	ABCA6	17	67080627	Silent	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09	51183523	67080627	14114583	18	75684										
DSG3	0	genome.wustl.edu	37	chr18	29037028	29037028	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	NA	0	1	1	0	ggcaaaaacgtgaatgggtgAaatttgccaaaccctgcaga							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	18	29037028	29037028	A	-	DEL	DSG3	ENST00000257189	human	ensembl	69_37n	1	known	frame_shift_del	c.157	p.K53fs	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	43	0	0	11	2	15.38	-	-	-	-	29037028	A	-	29037028	7	5	943	1	0	1	0	1	0	0	0	0	4813	247	9	0	167	0	DSG3	18	29037028	Frame_Shift_Del	DEL	A	TCGA-GM-A4E0-01A-12D-A25Q-09		29037028	49040220	19	75685										
PSG5	0	genome.wustl.edu	37	chr19	43689261	43689261	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	cagggcttcaatcgtgacttGagcagtgataggcaggttcc	13	9	1	3			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	19	43689261	43689261	G	T	SNP	PSG5	ENST00000342951	human	ensembl	69_37n	-1	known	missense	c.103	p.Q35K	0.029	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG5	HGNC	ENSG00000204941	251	1	0.4	157	18	10.23	-	-	-	T	43689261	G	T	43689261	3	4	943	1	0	0	0	0	1	0	0	0	12738	1299	45	2	920	2	PSG5	19	43689261	Missense_Mutation	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		43689261	15439722	20	75686										
LENG1	0	genome.wustl.edu	37	chr19	54660549	54660549	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	ccttttcctttctgctgcgaCtgccttcatcaccgccgtgc	7	17	3	0			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	19	54660549	54660549	C	A	SNP	LENG1	ENST00000222224	human	ensembl	69_37n	-1	known	missense	c.527	p.S176I	0.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617	177	1	0.56	105	15	12.5	-	-	-	A	54660549	C	A	54660549	3	1	943	1	0	0	0	0	1	0	0	0	8777	565	20	4	275	4	LENG1	19	54660549	Missense_Mutation	SNP	C	TCGA-GM-A4E0-01A-12D-A25Q-09	10971288	54660549	4468434	21	75687										
ZNF335	0	genome.wustl.edu	37	chr20	44596921	44596922	+	Splice_Site	INS	-	-	A													0	0	1	0	NA	0	1	1	0	attctggcacctggggtcttINSaccatcatctgggccctgta							TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	20	44596921	44596922	-	A	INS	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	splice_site_ins	c.520+2_520+1	e3+2	0.981:1.000	-	-	-	no_errors	ZNF335	HGNC	ENSG00000198026	94	0	0	54	14	20.59	-	-	-	A	44596922	-	A	44596921	8	5	943	1	0	1	1	0	0	0	1	0	17948	1769	61	0		0	ZNF335	20	44596921	Splice_Site	INS	-	TCGA-GM-A4E0-01A-12D-A25Q-09		44596921	18428599	22	75688										
PLXNA3	0	genome.wustl.edu	37	chrX	153694400	153694400	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	NA	0	1	1	0	gtgcgttgcaactccattccGgccgagtacatcagtgctga	11	12	1	1			TCGA-GM-A4E0-01A-12D-A25Q-09	TCGA-GM-A4E0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8b2454dd-d46c-46a7-adda-9f5085a6af93	3ebc1283-9ccc-4278-808b-f7a6bda7fc5a	X	153694400	153694400	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	1	known	silent	c.2655	p.P885	0.004	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	107	0	0	82	13	13.68	-	-	-	A	153694400	G	A	153694400	2	1	943	1	0	0	0	0	0	0	0	1	12195	1103	39	1		1	PLXNA3	23	153694400	Silent	SNP	G	TCGA-GM-A4E0-01A-12D-A25Q-09		153694400	1576160	23	75689										
CCDC27	0	genome.wustl.edu	37	chr1	3679228	3679228	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	aagctgggcaggctgagcctCctgaaggccttctccagaca	12	13	1	3			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	1	3679228	3679228	C	G	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	silent	c.906	p.L302	0.010	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	63	0	0	49	26	34.21	-	-	-	G	3679228	C	G	3679228	2	3	944	1	0	0	0	0	0	0	0	1	2827	842	30	2		2	CCDC27	1	3679228	Silent	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		3679228	245571393	1	75690										
ID3	0	genome.wustl.edu	37	chr1	23884532	23884532	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	aaaaaaggtacaaaacctatAtactctattatagagttcat	4	6	2	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	1	23884532	23884532	A	G	SNP	ID3	ENST00000463312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ID3	HGNC	ENSG00000117318	48	0	0	49	12	19.67	-	-	-	G	23884532	A	G	23884532	1	3	944	0	1	0	0	0	0	0	0	0	7545	464	16	5		5	ID3	1	23884532	RNA	SNP	A	TCGA-GM-A5PV-01A-11D-A28B-09	20205304	23884532	225366089	2	75691										
LPIN1	0	genome.wustl.edu	37	chr2	11922610	11922610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	agtccagacagcaaacaagaCggattctccttccaggaaaa	8	11	1	2			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	2	11922610	11922610	C	T	SNP	LPIN1	ENST00000449576	human	ensembl	69_37n	1	known	missense	c.1388	p.T463M	0.924	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	19	0	0	18	8	30.77	-	-	-	T	11922610	C	T	11922610	3	4	944	1	0	0	0	0	1	0	0	0	8984	536	19	1	1155	1	LPIN1	2	11922610	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		11922610	231276763	3	75692										
PCDHB13	0	genome.wustl.edu	37	chr5	140594909	140594909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	aaacttttacaccctactaaCggagagaccactagacagag	7	11	0	3			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	5	140594909	140594909	C	T	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	1	known	missense	c.1214	p.T405M	0.034	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	61	0	0	76	11	12.64	-	-	-	T	140594909	C	T	140594909	3	4	944	1	0	0	0	0	1	0	0	0	11611	536	19	1	1216	1	PCDHB13	5	140594909	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		140594909	40320351	4	75693										
COL9A1	0	genome.wustl.edu	37	chr6	70926628	70926628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	caggccctttgttaaatgctCgctgaccagcctgcatggtg	11	12	0	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	6	70926628	70926628	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.2738	p.R913Q	0.993	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	25	0	0	41	13	24.07	-	-	-	T	70926628	C	T	70926628	3	4	944	1	0	0	0	0	1	0	0	0	3737	884	31	1	31	1	COL9A1	6	70926628	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		70926628	100188439	5	75694										
IBTK	0	genome.wustl.edu	37	chr6	82936959	82936959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tcgccctccaggaccatgacCacaggtataaacctgccctt	7	16	0	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	6	82936959	82936959	C	G	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.604	p.G202R	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	45	0	0	38	19	33.33	-	-	-	G	82936959	C	G	82936959	3	3	944	1	0	0	0	0	1	0	0	0	7530	594	21	4	3557	4	IBTK	6	82936959	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09	12010331	82936959	88178108	6	75695										
ZNF498	0	genome.wustl.edu	37	chr7	99227520	99227520	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	ggggagcggctggtccgacaCcagagaatccatacagggga	16	10	0	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	7	99227520	99227520	C	G	SNP	ZNF498	ENST00000334715	human	ensembl	69_37n	1	known	missense	c.1512	p.H504Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	87	0	0	67	35	34.31	-	-	-	G	99227520	C	G	99227520	3	3	944	1	0	0	0	0	1	0	0	0	18043	506	18	4	1530	4	ZNF498	7	99227520	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		99227520	59911143	7	75696										
NBN	0	genome.wustl.edu	37	chr8	90965699	90965699	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tcttagcttttctgcagcatGagatttactggcagaatttt	8	7	2	2			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	8	90965699	90965699	G	A	SNP	NBN	ENST00000265433	human	ensembl	69_37n	-1	known	missense	c.1618	p.H540Y	0.000	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	53	0	0	64	33	34.02	-	-	-	A	90965699	G	A	90965699	3	1	944	1	0	0	0	0	1	0	0	0	10263	1290	45	2	670	2	NBN	8	90965699	Missense_Mutation	SNP	G	TCGA-GM-A5PV-01A-11D-A28B-09		90965699	55398323	8	75697										
PTEN	0	genome.wustl.edu	37	chr10	89692792	89692792	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	gcacaatatccttttgaagaCcataacccaccacagctaga	5	13	0	3			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	10	89692792	89692792	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.276	p.D92E	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	43	0	0	42	26	38.24	-	-	-	G	89692792	C	G	89692792	3	3	944	1	0	0	0	0	1	0	0	0	12818	506	18	4	294	4	PTEN	10	89692792	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		89692792	45841955	9	75698										
SEC23IP	0	genome.wustl.edu	37	chr10	121685689	121685689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	aacttccagttggtgcttgcGtgtcttctgtgtgtgtgaat	12	7	2	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	10	121685689	121685689	G	T	SNP	SEC23IP	ENST00000369075	human	ensembl	69_37n	1	known	missense	c.2263	p.V755L	0.522	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651	47	0	0	61	21	25.61	-	-	-	T	121685689	G	T	121685689	3	4	944	1	0	0	0	0	1	0	0	0	14081	1145	40	3	2313	3	SEC23IP	10	121685689	Missense_Mutation	SNP	G	TCGA-GM-A5PV-01A-11D-A28B-09	31992897	121685689	13849058	10	75699										
SOX6	0	genome.wustl.edu	37	chr11	16068116	16068116	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tatggaggacagtttcccgtCaacaccatgtggctgttgct	11	10	1	0			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	11	16068116	16068116	C	T	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.1567	p.D523N	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	49	0	0	59	21	26.25	-	-	-	T	16068116	C	T	16068116	3	4	944	1	0	0	0	0	1	0	0	0	15044	826	29	2	939	2	SOX6	11	16068116	Missense_Mutation	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		16068116	118938400	11	75700										
PACSIN3	0	genome.wustl.edu	37	chr11	47200771	47200771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tgctgcgccaccagcgcagaTcctcttcgtcactggctgcc	10	17	2	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	11	47200771	47200771	T	C	SNP	PACSIN3	ENST00000298838	human	ensembl	69_37n	-1	known	missense	c.839	p.D280G	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,prints_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912	39	0	0	29	10	25.64	-	-	-	C	47200771	T	C	47200771	3	2	944	1	0	0	0	0	1	0	0	0	11449	1435	50	5	451	5	PACSIN3	11	47200771	Missense_Mutation	SNP	T	TCGA-GM-A5PV-01A-11D-A28B-09	31132655	47200771	87805745	12	75701										
GPR133	0	genome.wustl.edu	37	chr12	131616324	131616324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tcatctcacagatcagcgccGacaactacaagatccatgga	7	13	3	2			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	12	131616324	131616324	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	1	known	missense	c.2230	p.D744N	0.998	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	79	0	0	48	35	42.17	-	-	-	A	131616324	G	A	131616324	3	1	944	1	0	0	0	0	1	0	0	0	6693	1058	37	1	2312	1	GPR133	12	131616324	Missense_Mutation	SNP	G	TCGA-GM-A5PV-01A-11D-A28B-09		131616324	2235571	13	75702										
PLA2G4D	0	genome.wustl.edu	37	chr15	42361019	42361019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	tctgcacgttgtagtcactgAgccgcagcaggcgctcgaag	13	12	2	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	15	42361019	42361019	A	G	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.2351	p.L784P	0.951	superfamily_Acyl_Trfase/lysoPLipase,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	47	0	0	40	22	35.48	-	-	-	G	42361019	A	G	42361019	3	3	944	1	0	0	0	0	1	0	0	0	12078	304	11	5	109	5	PLA2G4D	15	42361019	Missense_Mutation	SNP	A	TCGA-GM-A5PV-01A-11D-A28B-09		42361019	60170373	14	75703										
CDH1	0	genome.wustl.edu	37	chr16	68862076	68862076	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	ctgtctcccccaccatcccaGttctgattctgctgctcttg	6	17	4	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	16	68862076	68862076	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	splice_site	c.2165-1	e14-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	131	0	0	83	49	37.12	-	-	-	A	68862076	G	A	68862076	5	1	944	1	0	0	0	0	0	0	1	0	3124	1043	36	4	2218	4	CDH1	16	68862076	Splice_Site	SNP	G	TCGA-GM-A5PV-01A-11D-A28B-09		68862076	21492677	15	75704										
FXR2	0	genome.wustl.edu	37	chr17	7507083	7507083	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	cttaacactcacgcttctctCagatcctcgggcacagccat	6	16	3	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	17	7507083	7507083	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	silent	c.441	p.L147	0.995	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	50	0	0	73	9	10.98	-	-	-	T	7507083	C	T	7507083	2	4	944	1	0	0	0	0	0	0	0	1	6165	813	29	2		2	FXR2	17	7507083	Silent	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		7507083	73688127	16	75705										
LHX1	0	genome.wustl.edu	37	chr17	35298024	35298024	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	agcgggtagcaacgagaatgAcgaccagaacctgggcgcca	14	11	0	3			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	17	35298024	35298024	A	T	SNP	LHX1	ENST00000254457	human	ensembl	69_37n	1	known	missense	c.515	p.D172V	1.000	superfamily_Homeodomain-like	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX1	HGNC	ENSG00000132130	50	0	0	43	21	32.81	-	-	-	T	35298024	A	T	35298024	3	4	944	1	0	0	0	0	1	0	0	0	8825	275	10	5	525	5	LHX1	17	35298024	Missense_Mutation	SNP	A	TCGA-GM-A5PV-01A-11D-A28B-09	27790941	35298024	45897186	17	75706										
ROCK1	0	genome.wustl.edu	37	chr18	18546962	18546962	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	gtccaaaagtttagcacgcaAttgctcaatatcactctctt	5	11	3	0			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	18	18546962	18546962	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	silent	c.3268	p.L1090	0.943	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	25	0	0	31	13	29.55	-	-	-	G	18546962	A	G	18546962	2	3	944	1	0	0	0	0	0	0	0	1	13603	98	4	5		5	ROCK1	18	18546962	Silent	SNP	A	TCGA-GM-A5PV-01A-11D-A28B-09		18546962	59530286	18	75707										
MKNK2	0	genome.wustl.edu	37	chr19	2042015	2042015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	ctccactacctccggggccaTgtactccgccgagccgcact	9	19	0	0			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	19	2042015	2042015	T	C	SNP	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	missense	c.769	p.M257V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	14	0	0	11	5	31.25	-	-	-	C	2042015	T	C	2042015	3	2	944	1	0	0	0	0	1	0	0	0	9676	1464	51	5	739	5	MKNK2	19	2042015	Missense_Mutation	SNP	T	TCGA-GM-A5PV-01A-11D-A28B-09		2042015	57086968	19	75708										
LILRA6	0	genome.wustl.edu	37	chr19	54745497	54745497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	actggggtgggaccacacccGgggggtgtttgtataatagt	16	7	0	0			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	19	54745497	54745497	G	A	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.613	p.R205W	0.022	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	26	0	0	34	5	12.82	-	-	-	A	54745497	G	A	54745497	3	1	944	1	0	0	0	0	1	0	0	0	8844	1115	39	1	852	1	LILRA6	19	54745497	Missense_Mutation	SNP	G	TCGA-GM-A5PV-01A-11D-A28B-09	52703482	54745497	4383486	20	75709										
VAPB	0	genome.wustl.edu	37	chr20	57020778	57020778	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	gtgtgtgtgtgtgtgtgtgtAttttttttttggttgtcttc	13	2	1	0			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	20	57020778	57020778	A	G	SNP	VAPB	ENST00000265619	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VAPB	HGNC	ENSG00000124164	8	0	0	12	7	36.84	-	-	-	G	57020778	A	G	57020778	1	3	944	0	1	0	0	0	0	0	0	0	17219	464	16	5		5	VAPB	20	57020778	RNA	SNP	A	TCGA-GM-A5PV-01A-11D-A28B-09		57020778	6004742	21	75710										
BCR	0	genome.wustl.edu	37	chr22	23523318	23523318	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	caggagcgcttccgcatgatCtacctgcagacgttgctggc	12	13	1	2			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	22	23523318	23523318	C	T	SNP	BCR	ENST00000305877	human	ensembl	69_37n	1	known	silent	c.171	p.I57	1.000	pfam_Bcr-Abl_oncoprot_oligo,superfamily_Bcr-Abl_oncoprot_oligo	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	28	0	0	32	14	30.43	-	-	-	T	23523318	C	T	23523318	2	4	944	1	0	0	0	0	0	0	0	1	1392	903	32	2		2	BCR	22	23523318	Silent	SNP	C	TCGA-GM-A5PV-01A-11D-A28B-09		23523318	27781248	22	75711										
FLNA	0	genome.wustl.edu	37	chrX	153582335	153582335	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.173913043478261	4	0.258372157000222	2.38256658595642	0	3.33559322033898	0.0285714285714286	0.251737451737452	0	gtggcaggcttgttcactacTccatgggtgaggccaggccc	14	12	1	1			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	X	153582335	153582335	T	A	SNP	FLNA	ENST00000438732	human	ensembl	69_37n	-1	novel	missense	c.482	p.E161V	0.094	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	-	no_start_codon:pseudogene:no_stop_codon	FLNA	HGNC	ENSG00000196924	77	0	0	91	35	27.78	-	-	-	A	153582335	T	A	153582335	3	1	944	1	0	0	0	0	1	0	0	0	5979	1538	54	5	2365	5	FLNA	23	153582335	Missense_Mutation	SNP	T	TCGA-GM-A5PV-01A-11D-A28B-09		153582335	1688225	23	75712										
PTP4A2	0	genome.wustl.edu	37	chr1	32384642	32384642	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	acgcatgttctcataggagaTctccacaggggctggacggt	13	10	2	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	1	32384642	32384642	T	G	SNP	PTP4A2	ENST00000344035	human	ensembl	69_37n	-1	known	missense	c.25	p.I9L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTP4A2	HGNC	ENSG00000184007	71	0	0	60	24	28.57	-	-	-	G	32384642	T	G	32384642	3	3	945	1	0	0	0	0	1	0	0	0	12852	1435	50	5	498	5	PTP4A2	1	32384642	Missense_Mutation	SNP	T	TCGA-GM-A5PX-01A-12D-A28B-09		32384642	216865979	1	75713										
MEAF6	0	genome.wustl.edu	37	chr1	37959690	37959690	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	agcctggaagcttctgcactAatgtgtcttctaatagtcct	8	10	3	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	1	37959690	37959690	A	G	SNP	MEAF6	ENST00000475828	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.271	-	-	-	no_errors	MEAF6	HGNC	ENSG00000163875	14	0	0	20	10	33.33	-	-	-	G	37959690	A	G	37959690	1	3	945	0	1	0	0	0	0	0	0	0	9492	377	13	5		5	MEAF6	1	37959690	RNA	SNP	A	TCGA-GM-A5PX-01A-12D-A28B-09	5575048	37959690	211290931	2	75714										
DENND4B	0	genome.wustl.edu	37	chr1	153913077	153913077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	cactgccagtgcagtgggaaGatcatctgaagcaccaggca	12	11	2	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	1	153913077	153913077	G	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.1332	p.I444M	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	26	0	0	37	6	13.95	-	-	-	C	153913077	G	C	153913077	3	2	945	1	0	0	0	0	1	0	0	0	4470	932	33	2	3234	2	DENND4B	1	153913077	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	115953387	153913077	95337544	3	75715										
ZNF648	0	genome.wustl.edu	37	chr1	182025619	182025619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	gcaatgcggaaggccctgccGcactcggcacagaggaatcc	13	14	0	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	1	182025619	182025619	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	silent	c.1527	p.C509	0.993	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	97	0	0	107	17	13.6	-	-	-	A	182025619	G	A	182025619	2	1	945	1	0	0	0	0	0	0	0	1	18159	1079	38	1		1	ZNF648	1	182025619	Silent	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	28112542	182025619	67225002	4	75716										
OR2C3	0	genome.wustl.edu	37	chr1	247695329	247695329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	gcggtaggagcatggtgagcGtggagcccaccatgctggtg	18	9	0	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	1	247695329	247695329	G	A	SNP	OR2C3	ENST00000366487	human	ensembl	69_37n	-1	known	missense	c.485	p.T162M	0.043	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2C3	HGNC	ENSG00000196242	38	0	0	53	14	20.9	-	-	-	A	247695329	G	A	247695329	3	1	945	1	0	0	0	0	1	0	0	0	11066	1145	40	1	481	1	OR2C3	1	247695329	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	65669710	247695329	1555292	5	75717										
NIPBL	0	genome.wustl.edu	37	chr5	36984780	36984780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	tttatctttaaatttcagatAagcctttgaaaaaaagaaaa	4	4	2	3			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	5	36984780	36984780	A	G	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.1498	p.K500E	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	26	0	0	26	14	35	-	-	-	G	36984780	A	G	36984780	3	3	945	1	0	0	0	0	1	0	0	0	10500	363	13	5	1532	5	NIPBL	5	36984780	Missense_Mutation	SNP	A	TCGA-GM-A5PX-01A-12D-A28B-09		36984780	143930480	6	75718										
BDP1	0	genome.wustl.edu	37	chr5	70793121	70793121	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	attgatcaaacagaaaatgtTaaaccaatgttgagaggtcg	9	5	1	3			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	5	70793121	70793121	T	C	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	1	known	silent	c.1824	p.V608	0.568	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	18	0	0	13	10	41.67	-	-	-	C	70793121	T	C	70793121	2	2	945	1	0	0	0	0	0	0	0	1	1399	1741	61	5		5	BDP1	5	70793121	Silent	SNP	T	TCGA-GM-A5PX-01A-12D-A28B-09	33808341	70793121	110122139	7	75719										
PCDHB14	0	genome.wustl.edu	37	chr5	140604476	140604476	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	tccgcgagaacaacagccccGccctgcacatcggcagcgtc	10	18	0	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	5	140604476	140604476	G	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	1	known	missense	c.1399	p.A467S	0.989	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	206	0	0	133	46	25.56	-	-	-	T	140604476	G	T	140604476	3	4	945	1	0	0	0	0	1	0	0	0	11612	1087	38	3	1401	3	PCDHB14	5	140604476	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	69811355	140604476	40310784	8	75720										
UHRF1BP1	0	genome.wustl.edu	37	chr6	34824168	34824168	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ggcaccttggagtagactctCtctttcggagaaaagcaggt	12	9	2	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	6	34824168	34824168	C	G	SNP	UHRF1BP1	ENST00000192788	human	ensembl	69_37n	1	known	missense	c.1273	p.L425V	0.154	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	50	0	0	40	11	21.57	-	-	-	G	34824168	C	G	34824168	3	3	945	1	0	0	0	0	1	0	0	0	17065	913	32	2	1311	2	UHRF1BP1	6	34824168	Missense_Mutation	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09		34824168	136290899	9	75721										
TES	0	genome.wustl.edu	37	chr7	115890285	115890285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ctcagagggggcacagtaccGgaagaagcagctggcaaagc	15	10	1	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	7	115890285	115890285	G	A	SNP	TES	ENST00000358204	human	ensembl	69_37n	1	known	missense	c.437	p.R146Q	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TES	HGNC	ENSG00000135269	46	0	0	34	10	22.73	-	-	-	A	115890285	G	A	115890285	3	1	945	1	0	0	0	0	1	0	0	0	15860	1116	39	1	451	1	TES	7	115890285	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		115890285	43248378	10	75722										
FAM86B1	0	genome.wustl.edu	37	chr8	12040541	12040541	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ccaggtgtcacctttctgccGtgttcctaacactttcattc	6	14	3	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	8	12040541	12040541	G	A	SNP	FAM86B1	ENST00000529146	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM86B1	HGNC	ENSG00000186523	12	0	0	6	7	53.85	-	-	-	A	12040541	G	A	12040541	1	1	945	0	1	0	0	0	0	0	0	0	5689	1160	40	1		1	FAM86B1	8	12040541	RNA	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		12040541	134323481	11	75723										
FAM125B	0	genome.wustl.edu	37	chr9	129265489	129265489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	tccgcacagagcagagcgcaGccgccaggctcccgcccagc	12	19	0	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	9	129265489	129265489	G	A	SNP	FAM125B	ENST00000361171	human	ensembl	69_37n	1	known	missense	c.907	p.A303T	0.904	NULL	pfam_FAM125	-	no_errors	FAM125B	HGNC	ENSG00000196814	34	0	0	40	12	23.08	-	-	-	A	129265489	G	A	129265489	3	1	945	1	0	0	0	0	1	0	0	0	5468	971	34	4	949	4	FAM125B	9	129265489	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		129265489	11947942	12	75724										
TTC18	0	genome.wustl.edu	37	chr10	75113464	75113464	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	cacttgattgaattctgctcGaataaaggtaactggagtat	9	6	1	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	10	75113464	75113464	G	A	SNP	TTC18	ENST00000310715	human	ensembl	69_37n	-1	known	nonsense	c.100	p.R34*	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042	48	0	0	51	6	10.53	-	-	-	A	75113464	G	A	75113464	4	1	945	1	0	0	0	0	0	1	0	0	16782	1066	37	1	3369	1	TTC18	10	75113464	Nonsense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		75113464	60421283	13	75725										
CALHM2	0	genome.wustl.edu	37	chr10	105207212	105207212	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	agctggtcctcattggcgcgGtactgcgcccagtaggcctc	13	14	1	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	10	105207212	105207212	G	C	SNP	CALHM2	ENST00000260743	human	ensembl	69_37n	-1	known	nonsense	c.669	p.Y223*	1.000	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172	97	0	0	59	12	16.9	-	-	-	C	105207212	G	C	105207212	4	2	945	1	0	0	0	0	0	1	0	0	2608	1256	44	4	306	4	CALHM2	10	105207212	Nonsense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	30093748	105207212	30327535	14	75726										
FRG2B	0	genome.wustl.edu	37	chr10	135439803	135439803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	tccttgtttggattgggctcCgatcctgctgcaagagaagg	13	9	0	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	10	135439803	135439803	C	T	SNP	FRG2B	ENST00000443774	human	ensembl	69_37n	-1	known	silent	c.186	p.S62	0.213	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	14	0	0	6	8	57.14	-	-	-	T	135439803	C	T	135439803	2	4	945	1	0	0	0	0	0	0	0	1	6096	639	23	1		1	FRG2B	10	135439803	Silent	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09	30232591	135439803	94944	15	75727										
NLRX1	0	genome.wustl.edu	37	chr11	119050480	119050480	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ccatggtgctggagatgtttCgagaggaggactactacaac	13	8	0	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	11	119050480	119050480	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	69_37n	1	known	nonsense	c.1750	p.R584*	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703	90	0	0	75	18	19.35	-	-	-	T	119050480	C	T	119050480	4	4	945	1	0	0	0	0	0	1	0	0	10557	876	31	1	1772	1	NLRX1	11	119050480	Nonsense_Mutation	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09		119050480	15956036	16	75728										
MON2	0	genome.wustl.edu	37	chr12	62959110	62959110	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	aattttcctgtaaacctccaCagtatggacagctggaaaca	7	10	0	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	12	62959110	62959110	C	T	SNP	MON2	ENST00000393630	human	ensembl	69_37n	1	known	nonsense	c.4129	p.Q1377*	1.000	superfamily_ARM-type_fold	pfam_DUF1981_SEC7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	63	0	0	60	15	20	-	-	-	T	62959110	C	T	62959110	4	4	945	1	0	0	0	0	0	1	0	0	9772	479	17	4	4232	4	MON2	12	62959110	Nonsense_Mutation	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09		62959110	70892785	17	75729										
TBX5	0	genome.wustl.edu	37	chr12	114841721	114841721	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	catggtgcgcccagggccctGtgcccgcgcaaggttctgct	14	15	1	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	12	114841721	114841721	G	A	SNP	TBX5	ENST00000552726	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TBX5	HGNC	ENSG00000089225	133	0	0	81	34	29.57	-	-	-	A	114841721	G	A	114841721	1	1	945	0	1	0	0	0	0	0	0	0	15756	1392	48	4		4	TBX5	12	114841721	RNA	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	51882611	114841721	19010174	18	75730										
SERPINA12	0	genome.wustl.edu	37	chr14	94953739	94953739	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ggtttgtctatcttgacgacGagtggtgtctccatgggcag	14	8	3	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	14	94953739	94953739	G	T	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	silent	c.1146	p.L382	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	30	0	0	12	5	29.41	-	-	-	T	94953739	G	T	94953739	2	4	945	1	0	0	0	0	0	0	0	1	14177	1045	37	3		3	SERPINA12	14	94953739	Silent	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		94953739	12395801	19	75731										
DLL4	0	genome.wustl.edu	37	chr15	41227213	41227213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	atgggggctcctgccgggagCgcaaccagggggccaactat	16	12	0	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	15	41227213	41227213	C	T	SNP	DLL4	ENST00000249749	human	ensembl	69_37n	1	known	missense	c.1138	p.R380C	1.000	pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,superfamily_Growth_fac_rcpt,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL4	HGNC	ENSG00000128917	71	0	0	44	15	25.42	-	-	-	T	41227213	C	T	41227213	3	4	945	1	0	0	0	0	1	0	0	0	4604	768	27	1	1168	1	DLL4	15	41227213	Missense_Mutation	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09		41227213	61304179	20	75732										
RABEP2	0	genome.wustl.edu	37	chr16	28916828	28916828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ttctgagaggaggtctgggaGctgggcctgcggggacagac	19	8	2	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	16	28916828	28916828	G	A	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	missense	c.1498	p.L500F	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	54	0	0	33	11	25	-	-	-	A	28916828	G	A	28916828	3	1	945	1	0	0	0	0	1	0	0	0	13045	971	34	4	219	4	RABEP2	16	28916828	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		28916828	61437925	21	75733										
CDH1	0	genome.wustl.edu	37	chr16	68845663	68845664	+	Frame_Shift_Ins	INS	-	-	A													0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	atgccgccatcgcttacaccINSatcctcagccaagatcctga							TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	16	68845663	68845664	-	A	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.909_910	p.I303fs	0.036:0.887	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	89	0	0	49	22	30.99	-	-	-	A	68845664	-	A	68845663	7	5	945	1	0	1	1	0	0	0	0	0	3124	581	21	0	935	0	CDH1	16	68845663	Frame_Shift_Ins	INS	-	TCGA-GM-A5PX-01A-12D-A28B-09	39928835	68845663	21509090	22	75734										
ZFR2	0	genome.wustl.edu	37	chr19	3806016	3806016	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ccctcctctccctcgccaggTccccgttgcctcttccggaa	7	21	2	0			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	19	3806016	3806016	T	C	SNP	ZFR2	ENST00000262961	human	ensembl	69_37n	-1	known	silent	c.2751	p.G917	0.568	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278	22	0	0	7	3	30	-	-	-	C	3806016	T	C	3806016	2	2	945	1	0	0	0	0	0	0	0	1	17756	1654	58	5		5	ZFR2	19	3806016	Silent	SNP	T	TCGA-GM-A5PX-01A-12D-A28B-09		3806016	55322967	23	75735										
MUC16	0	genome.wustl.edu	37	chr19	9072872	9072872	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	gaggtggtaacatttggagaTgtgactttagatggctctgg	15	4	1	3			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	19	9072872	9072872	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.14574	p.T4858	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	194	0	0	156	38	19.59	-	-	-	G	9072872	T	G	9072872	2	3	945	1	0	0	0	0	0	0	0	1	10045	1451	51	5		5	MUC16	19	9072872	Silent	SNP	T	TCGA-GM-A5PX-01A-12D-A28B-09	5266856	9072872	50056111	24	75736										
LPPR2	0	genome.wustl.edu	37	chr19	11467547	11467547	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	gcctgggcctcagtttccacAtctgcacaatgggggtgacc	12	13	2	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	19	11467547	11467547	A	G	SNP	LPPR2	ENST00000586431	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	LPPR2	Clone_based_vega_gene	ENSG00000105520	44	0	0	34	4	10.53	-	-	-	G	11467547	A	G	11467547	1	3	945	0	1	0	0	0	0	0	0	0	8991	232	8	5		5	LPPR2	19	11467547	RNA	SNP	A	TCGA-GM-A5PX-01A-12D-A28B-09	2394675	11467547	47661436	25	75737										
NCAN	0	genome.wustl.edu	37	chr19	19339131	19339131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ctcccaaccccacccagagcCagaggatcaggtggagaccc	10	17	1	3			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	19	19339131	19339131	C	T	SNP	NCAN	ENST00000252575	human	ensembl	69_37n	1	known	missense	c.2702	p.P901L	0.040	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	82	0	0	58	15	20.55	-	-	-	T	19339131	C	T	19339131	3	4	945	1	0	0	0	0	1	0	0	0	10276	594	21	4	2728	4	NCAN	19	19339131	Missense_Mutation	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09	7871584	19339131	39789852	26	75738										
RYR1	0	genome.wustl.edu	37	chr19	38942506	38942506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	tgatccacagcaccaatggcCtatacaaccagttcatcaag	6	13	2	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	19	38942506	38942506	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.1225	p.L409	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	68	0	0	38	5	11.63	-	-	-	T	38942506	C	T	38942506	2	4	945	1	0	0	0	0	0	0	0	1	13854	680	24	4		4	RYR1	19	38942506	Silent	SNP	C	TCGA-GM-A5PX-01A-12D-A28B-09	19603375	38942506	20186477	27	75739										
SYN3	0	genome.wustl.edu	37	chr22	33402387	33402387	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	aggatcctgggtctttgaacAatgggcgtggagggacctgg	17	7	1	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	22	33402387	33402387	A	G	SNP	SYN3	ENST00000332840	human	ensembl	69_37n	-1	known	silent	c.261	p.I87	0.005	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_fold,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666	103	0	0	71	18	20.22	-	-	-	G	33402387	A	G	33402387	2	3	945	1	0	0	0	0	0	0	0	1	15534	126	5	5		5	SYN3	22	33402387	Silent	SNP	A	TCGA-GM-A5PX-01A-12D-A28B-09		33402387	17902179	28	75740										
MYH9	0	genome.wustl.edu	37	chr22	36708257	36708257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	ccagcagggccagaatgcccGgggggcctgcctggaggaag	18	12	0	1			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	22	36708257	36708257	G	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.1565	p.P522L	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	49	0	0	35	16	31.37	-	-	-	A	36708257	G	A	36708257	3	1	945	1	0	0	0	0	1	0	0	0	10114	1116	39	1	4429	1	MYH9	22	36708257	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09	3305870	36708257	14596309	29	75741										
TNRC6B	0	genome.wustl.edu	37	chr22	40662032	40662032	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	acaggcccacacatcctgatTgtcaggctgtcttgcagact	9	13	2	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	22	40662032	40662032	T	C	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	1	known	missense	c.1798	p.C600R	0.999	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	57	0	0	45	8	15.09	-	-	-	C	40662032	T	C	40662032	3	2	945	1	0	0	0	0	1	0	0	0	16436	1812	63	5	1937	5	TNRC6B	22	40662032	Missense_Mutation	SNP	T	TCGA-GM-A5PX-01A-12D-A28B-09	3953775	40662032	10642534	30	75742										
SPANXD	0	genome.wustl.edu	37	chrX	140785800	140785800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0645161290322581	2	0.904872247913239	0.950138504155125	6.01754385964912	0	0.333333333333333	0.930327025915261	0	cagatgtttttagttttttcGgagcaggttgcgggtctgag	14	5	1	2			TCGA-GM-A5PX-01A-12D-A28B-09	TCGA-GM-A5PX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0212e1a1-d848-4b05-9a51-2dbe17cdd8b8	1f1936a1-2c70-4dd9-845c-44d8262ac43d	X	140785800	140785800	G	A	SNP	SPANXD	ENST00000370515	human	ensembl	69_37n	-1	known	missense	c.116	p.P39L	0.001	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXD	HGNC	ENSG00000196406	181	0	0	181	55	23.31	-	-	-	A	140785800	G	A	140785800	3	1	945	1	0	0	0	0	1	0	0	0	15079	1116	39	1	181	1	SPANXD	23	140785800	Missense_Mutation	SNP	G	TCGA-GM-A5PX-01A-12D-A28B-09		140785800	14484760	31	75743										
ANGPTL7	0	genome.wustl.edu	37	chr1	11254927	11254927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ccaggtggctactggtacaaCtgctgcacagactccaacct	9	14	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	11254927	11254927	C	G	SNP	ANGPTL7	ENST00000376819	human	ensembl	69_37n	1	known	missense	c.888	p.N296K	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL7	HGNC	ENSG00000171819	58	0	0	2	23	92	-	-	-	G	11254927	C	G	11254927	3	3	946	1	0	0	0	0	1	0	0	0	619	564	20	4	906	4	ANGPTL7	1	11254927	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09		11254927	237995694	1	75744										
E2F2	0	genome.wustl.edu	37	chr1	23857034	23857034	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gtgggggcccccagcattacCggcagccggcctgccggcag	16	16	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	23857034	23857034	C	A	SNP	E2F2	ENST00000361729	human	ensembl	69_37n	-1	known	silent	c.252	p.P84	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968	27	0	0	18	15	45.45	-	-	-	A	23857034	C	A	23857034	2	1	946	1	0	0	0	0	0	0	0	1	4902	666	23	3		3	E2F2	1	23857034	Silent	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	12602107	23857034	225393587	2	75745										
HMGB4	0	genome.wustl.edu	37	chr1	34330058	34330058	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gaagaaacggagaaagcgggAtccccaggaacccagacggc	14	11	0	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	34330058	34330058	A	T	SNP	HMGB4	ENST00000519684	human	ensembl	69_37n	1	known	missense	c.266	p.D89V	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB4	HGNC	ENSG00000176256	71	0	0	38	25	39.68	-	-	-	T	34330058	A	T	34330058	3	4	946	1	0	0	0	0	1	0	0	0	7279	333	12	5	268	5	HMGB4	1	34330058	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	10473024	34330058	214920563	3	75746										
MACF1	0	genome.wustl.edu	37	chr1	39854171	39854171	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	acagagagggggaaagctcgTcaggaacagctggaactgac	15	8	1	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	39854171	39854171	T	C	SNP	MACF1	ENST00000372925	human	ensembl	69_37n	1	novel	missense	c.6808	p.S2270P	0.043	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_EF_HAND_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MACF1	HGNC	ENSG00000127603	43	0	0	25	21	45.65	-	-	-	C	39854171	T	C	39854171	3	2	946	1	0	0	0	0	1	0	0	0	9211	1654	58	5	15832	5	MACF1	1	39854171	Missense_Mutation	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09	5524113	39854171	209396450	4	75747										
ST3GAL3	0	genome.wustl.edu	37	chr1	44202021	44202021	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tgtattattctgcgtggaagCtacacttactccagtgggag	11	8	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	44202021	44202021	C	G	SNP	ST3GAL3	ENST00000262915	human	ensembl	69_37n	1	known	missense	c.88	p.L30V	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091	163	0	0	92	69	42.86	-	-	-	G	44202021	C	G	44202021	3	3	946	1	0	0	0	0	1	0	0	0	15307	796	28	4	90	4	ST3GAL3	1	44202021	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	4347850	44202021	205048600	5	75748										
COL11A1	0	genome.wustl.edu	37	chr1	103480081	103480081	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tcttacccgagcctgctgaaGaatagcttgagcctgagctt	10	11	1	4			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	103480081	103480081	G	T	SNP	COL11A1	ENST00000358392	human	ensembl	69_37n	-1	known	missense	c.1594	p.L532I	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	88	0	0	30	37	55.22	-	-	-	T	103480081	G	T	103480081	3	4	946	1	0	0	0	0	1	0	0	0	3697	942	33	2	4082	2	COL11A1	1	103480081	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	59278060	103480081	145770540	6	75749										
IGFN1	0	genome.wustl.edu	37	chr1	201172878	201172878	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ggccttaggatggtgagatgAtcccctatggcttcaacaac	11	10	1	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	201172878	201172878	A	T	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	1	known	missense	c.760	p.I254F	0.823	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	40	0	0	5	38	88.37	-	-	-	T	201172878	A	T	201172878	3	4	946	1	0	0	0	0	1	0	0	0	7644	333	12	5	794	5	IGFN1	1	201172878	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	97692797	201172878	48077743	7	75750										
ADSS	0	genome.wustl.edu	37	chr1	244615099	244615099	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ggcagggaggatgccgccggGtaggtctcggcgaacgccat	18	11	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	1	244615099	244615099	G	T	SNP	ADSS	ENST00000366535	human	ensembl	69_37n	-1	known	nonsense	c.21	p.Y7*	0.003	NULL	pfam_Adenylosuccinate_synthetase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687	27	0	0	18	17	48.57	-	-	-	T	244615099	G	T	244615099	4	4	946	1	0	0	0	0	0	1	0	0	347	1256	44	4	1401	4	ADSS	1	244615099	Nonsense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	43442221	244615099	4635522	8	75751										
ZNF513	0	genome.wustl.edu	37	chr2	27601550	27601550	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	agtgtgggtgcgggtatgtcGtgtcaggttgacgagctggg	20	5	1	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	27601550	27601550	G	A	SNP	ZNF513	ENST00000323703	human	ensembl	69_37n	-1	known	nonsense	c.583	p.R195*	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795	102	0	0	28	67	70.53	-	-	-	A	27601550	G	A	27601550	4	1	946	1	0	0	0	0	0	1	0	0	18054	1153	40	1	1050	1	ZNF513	2	27601550	Nonsense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		27601550	215597823	9	75752										
PROM2	0	genome.wustl.edu	37	chr2	95951442	95951442	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gctggcccaggagctgcaagGactggcccaggcccaagtga	15	13	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	95951442	95951442	G	C	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	1	known	missense	c.1931	p.G644A	0.005	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	39	0	0	19	14	42.42	-	-	-	C	95951442	G	C	95951442	3	2	946	1	0	0	0	0	1	0	0	0	12637	1174	41	2	1993	2	PROM2	2	95951442	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	68349892	95951442	147247931	10	75753										
PLA2R1	0	genome.wustl.edu	37	chr2	160832693	160832693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	aaccattctgaggcaaaggtAtgaaaaaggtattctgcatc	9	7	2	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	160832693	160832693	A	G	SNP	PLA2R1	ENST00000283243	human	ensembl	69_37n	-1	known	silent	c.2481	p.H827	0.061	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246	97	0	0	5	48	90.57	-	-	-	G	160832693	A	G	160832693	2	3	946	1	0	0	0	0	0	0	0	1	12084	446	16	5		5	PLA2R1	2	160832693	Silent	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	64881251	160832693	82366680	11	75754										
TTN	0	genome.wustl.edu	37	chr2	179514910	179514911	+	In_Frame_Ins	INS	-	-	GAG													0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ctgctggaggtggaacctctINSggttcctcctcttctgcaac							TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	179514910	179514911	-	GAG	INS	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	in_frame_ins	c.32496_32495	p.10833in_frame_insS	0.003:0.016	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	32	0	0	9	26	74.29	-	-	-	GAG	179514911	-	GAG	179514910	7	5	946	1	0	1	1	0	0	0	0	0	16832	1567	55	0	68085	0	TTN	2	179514910	In_Frame_Ins	INS	-	TCGA-HN-A2NL-01A-11D-A18P-09	18682217	179514910	63684463	12	75755										
TTN	0	genome.wustl.edu	37	chr2	179641594	179641594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	caatctcctttgctctatatGtcccccgtgggatgattaac	7	12	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	179641594	179641594	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.4997	p.T1666I	0.996	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	65	0	0	10	37	78.72	-	-	-	A	179641594	G	A	179641594	3	1	946	1	0	0	0	0	1	0	0	0	16832	1377	48	4	106331	4	TTN	2	179641594	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	126684	179641594	63557779	13	75756										
ZDBF2	0	genome.wustl.edu	37	chr2	207171420	207171420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttcagctcatgatgagcctcAagaagctttggatgaagtaa	10	7	3	4			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	207171420	207171420	A	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	1	known	missense	c.2168	p.Q723L	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	65	0	0	7	33	80.49	-	-	-	T	207171420	A	T	207171420	3	4	946	1	0	0	0	0	1	0	0	0	17695	130	5	5	2178	5	ZDBF2	2	207171420	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	27529826	207171420	36027953	14	75757										
ABCA12	0	genome.wustl.edu	37	chr2	215851351	215851351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cagattgaggttatcaacagCaacttttgagccatagatct	8	8	2	4			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	215851351	215851351	C	A	SNP	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	missense	c.4078	p.A1360S	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	65	0	0	6	29	82.86	-	-	-	A	215851351	C	A	215851351	3	1	946	1	0	0	0	0	1	0	0	0	30	710	25	4	3813	4	ABCA12	2	215851351	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	8679931	215851351	27348022	15	75758										
IHH	0	genome.wustl.edu	37	chr2	219925127	219925127	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cagccccatgccgccggcacCaccagcagcagcaacaggac	10	19	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	2	219925127	219925127	C	A	SNP	IHH	ENST00000295731	human	ensembl	69_37n	-1	known	silent	c.63	p.V21	0.998	pirsf_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pfscan_Intein_splice_site,prints_Hedgehog	-	no_errors	IHH	HGNC	ENSG00000163501	18	0	0	6	13	68.42	-	-	-	A	219925127	C	A	219925127	2	1	946	1	0	0	0	0	0	0	0	1	7661	581	21	4		4	IHH	2	219925127	Silent	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	4073776	219925127	23274246	16	75759										
IGSF10	0	genome.wustl.edu	37	chr3	151160785	151160785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gacttacctatgctgctggtCgaccacagccttggatggta	11	11	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	3	151160785	151160785	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.5950	p.D1984N	0.995	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	71	0	0	63	39	38.24	-	-	-	T	151160785	C	T	151160785	3	4	946	1	0	0	0	0	1	0	0	0	7651	884	31	1	1977	1	IGSF10	3	151160785	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09		151160785	46861645	17	75760										
FBXO45	0	genome.wustl.edu	37	chr3	196296086	196296086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cacggcgatgagaacagcgaGgtgtggcggagcctgtgcgc	18	10	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	3	196296086	196296086	G	A	SNP	FBXO45	ENST00000311630	human	ensembl	69_37n	1	known	silent	c.231	p.E77	1.000	superfamily_ConA-like_lec_gl,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_SPRY_rcpt,pfam_F-box_dom_cyclin-like,superfamily_ConA-like_lec_gl,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO45	HGNC	ENSG00000174013	16	0	0	20	15	42.86	-	-	-	A	196296086	G	A	196296086	2	1	946	1	0	0	0	0	0	0	0	1	5800	991	35	4		4	FBXO45	3	196296086	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	45135301	196296086	1726344	18	75761										
AFAP1	0	genome.wustl.edu	37	chr4	7774593	7774593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gctcgatggccagccccaggGtgactccgcccgccagcgct	13	18	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	4	7774593	7774593	G	C	SNP	AFAP1	ENST00000420658	human	ensembl	69_37n	-1	known	missense	c.2207	p.T736S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526	31	0	0	8	9	50	-	-	-	C	7774593	G	C	7774593	3	2	946	1	0	0	0	0	1	0	0	0	353	1261	44	4	249	4	AFAP1	4	7774593	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		7774593	183379683	19	75762										
ANAPC4	0	genome.wustl.edu	37	chr4	25390489	25390489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttctgatgaaattattaagcTcttgggagacgtcaggtaaa	10	5	3	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	4	25390489	25390489	T	C	SNP	ANAPC4	ENST00000510092	human	ensembl	69_37n	1	known	missense	c.500	p.L167P	1.000	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	54	0	0	23	10	30.3	-	-	-	C	25390489	T	C	25390489	3	2	946	1	0	0	0	0	1	0	0	0	604	1551	54	5	522	5	ANAPC4	4	25390489	Missense_Mutation	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09	17615896	25390489	165763787	20	75763										
ARHGAP24	0	genome.wustl.edu	37	chr4	86893257	86893257	+	Frame_Shift_Del	DEL	T	T	-													0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	agaacttccagaaccagttaTtccttatgcgaagtatgaag							TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	4	86893257	86893257	T	-	DEL	ARHGAP24	ENST00000395184	human	ensembl	69_37n	1	known	frame_shift_del	c.668	p.P224fs	0.998	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	74	0	0	6	23	76.67	-	-	-	-	86893257	T	-	86893257	7	5	946	1	0	1	0	1	0	0	0	0	875	1493	52	0	802	0	ARHGAP24	4	86893257	Frame_Shift_Del	DEL	T	TCGA-HN-A2NL-01A-11D-A18P-09	61502768	86893257	104261019	21	75764										
NAF1	0	genome.wustl.edu	37	chr4	164061489	164061489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tgtgatctgaagaattaaacCgtaacacataaaatggatgt	8	5	1	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	4	164061489	164061489	C	T	SNP	NAF1	ENST00000274054	human	ensembl	69_37n	-1	known	missense	c.764	p.R255Q	1.000	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_elong_init/rib_B-barrel	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	NAF1	HGNC	ENSG00000145414	58	0	0	4	26	86.67	-	-	-	T	164061489	C	T	164061489	3	4	946	1	0	0	0	0	1	0	0	0	10212	652	23	1	877	1	NAF1	4	164061489	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	77168232	164061489	27092787	22	75765										
TXNDC15	0	genome.wustl.edu	37	chr5	134223692	134223692	+	Missense_Mutation	SNP	A	A	C													0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttctctctggatggcgctggAgcacacttccctgacagaga							TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	5	134223692	134223692	A	C	SNP	TXNDC15	ENST00000508779	human	ensembl	69_37n	1	putative	missense	c.362	p.E121A	0.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TXNDC15	HGNC	ENSG00000113621	54	0	0	6	24	80	-	-	-	C	134223692	A	C	134223692	3	2	946	1	0	0	0	0	1	0	0	0	16891	291	11	5	417	5	TXNDC15	5	134223692	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09		134223692	46691568	23	75766	528	2								
TXNDC15	0	genome.wustl.edu	37	chr5	134223693	134223693	+	Missense_Mutation	SNP	G	G	T													0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tctctctggatggcgctggaGcacacttccctgacagagaa							TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	5	134223693	134223693	G	T	SNP	TXNDC15	ENST00000358387	human	ensembl	69_37n	1	known	missense	c.412	p.A138S	0.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC15	HGNC	ENSG00000113621	54	0	0	6	25	80.65	-	-	-	T	134223693	G	T	134223693	3	4	946	1	0	0	0	0	1	0	0	0	16891	971	34	4	418	4	TXNDC15	5	134223693	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	1	134223693	46691567	24	75767	528	2								
CUL9	0	genome.wustl.edu	37	chr6	43170930	43170930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	atcatccagatccgcataaaGcgctgccagcaggtggtgtt	11	11	1	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	6	43170930	43170930	G	T	SNP	CUL9	ENST00000252050	human	ensembl	69_37n	1	known	missense	c.3837	p.K1279N	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659	93	0	0	55	44	44.44	-	-	-	T	43170930	G	T	43170930	3	4	946	1	0	0	0	0	1	0	0	0	4092	962	34	4	3903	4	CUL9	6	43170930	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		43170930	127944137	25	75768										
TRDN	0	genome.wustl.edu	37	chr6	123892141	123892141	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cacgtgattatcagggcaatGaccagaagccaggctgcagg	13	10	1	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	6	123892141	123892141	G	T	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	silent	c.159	p.V53	0.991	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	86	0	0	41	29	41.43	-	-	-	T	123892141	G	T	123892141	2	4	946	1	0	0	0	0	0	0	0	1	16564	1277	45	2		2	TRDN	6	123892141	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	80721211	123892141	47222926	26	75769										
KLHL7	0	genome.wustl.edu	37	chr7	23164391	23164391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	acaactggtggaatttgcttAtactgctaggtgagttaagt	11	5	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	7	23164391	23164391	A	G	SNP	KLHL7	ENST00000339077	human	ensembl	69_37n	1	known	missense	c.308	p.Y103C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	73	0	0	46	43	48.31	-	-	-	G	23164391	A	G	23164391	3	3	946	1	0	0	0	0	1	0	0	0	8447	449	16	5	318	5	KLHL7	7	23164391	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09		23164391	135974272	27	75770										
ZSCAN21	0	genome.wustl.edu	37	chr7	99655431	99655431	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cagcccttggagaccagtcaCaaatacgagtcttgggggcc	12	12	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	7	99655431	99655431	C	G	SNP	ZSCAN21	ENST00000292450	human	ensembl	69_37n	1	known	missense	c.510	p.H170Q	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	69	0	0	33	24	40.68	-	-	-	G	99655431	C	G	99655431	3	3	946	1	0	0	0	0	1	0	0	0	18325	477	17	4	516	4	ZSCAN21	7	99655431	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	76491040	99655431	59483232	28	75771										
ZC3HAV1	0	genome.wustl.edu	37	chr7	138764516	138764516	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cacagcttcaggtgtttgcaGagagccaagagaagagcggg	15	8	1	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	7	138764516	138764516	G	C	SNP	ZC3HAV1	ENST00000242351	human	ensembl	69_37n	-1	known	missense	c.1171	p.L391V	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939	80	0	0	8	80	90.91	-	-	-	C	138764516	G	C	138764516	3	2	946	1	0	0	0	0	1	0	0	0	17671	933	33	2	1581	2	ZC3HAV1	7	138764516	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	39109085	138764516	20374147	29	75772										
DCTN6	0	genome.wustl.edu	37	chr8	30038046	30038046	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	attgacaagtggctgcatcaTtggggcttgttgcaacctaa	11	8	1	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	8	30038046	30038046	T	C	SNP	DCTN6	ENST00000221114	human	ensembl	69_37n	1	known	missense	c.374	p.I125T	1.000	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN6	HGNC	ENSG00000104671	101	0	0	71	50	41.32	-	-	-	C	30038046	T	C	30038046	3	2	946	1	0	0	0	0	1	0	0	0	4342	1493	52	5	396	5	DCTN6	8	30038046	Missense_Mutation	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09		30038046	116325976	30	75773										
FLJ43860	0	genome.wustl.edu	37	chr8	142486200	142486200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	acacgctgcggaagcaggtgGacaggagctgagacttcctt	14	10	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	8	142486200	142486200	G	T	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.1493	p.S498Y	0.001	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	40	0	0	38	7	15.56	-	-	-	T	142486200	G	T	142486200	3	4	946	1	0	0	0	0	1	0	0	0	5976	1174	41	2	2535	2	FLJ43860	8	142486200	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	112448154	142486200	3877822	31	75774										
TRPM6	0	genome.wustl.edu	37	chr9	77435343	77435343	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttcacctgaggtcgcagcatCctggaagagaaataaatggt	11	8	1	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	9	77435343	77435343	C	G	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	silent	c.1011	p.G337	0.835	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	55	0	0	44	24	35.29	-	-	-	G	77435343	C	G	77435343	2	3	946	1	0	0	0	0	0	0	0	1	16686	869	30	2		2	TRPM6	9	77435343	Silent	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09		77435343	63778088	32	75775										
MRPS2	0	genome.wustl.edu	37	chr9	138395775	138395775	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gtggacaccaactgcaacccCtgcctcatcacctaccctgt	6	18	2	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	9	138395775	138395775	C	T	SNP	MRPS2	ENST00000241600	human	ensembl	69_37n	1	known	silent	c.687	p.P229	0.517	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	46	0	0	2	22	91.67	-	-	-	T	138395775	C	T	138395775	2	4	946	1	0	0	0	0	0	0	0	1	9903	668	24	4		4	MRPS2	9	138395775	Silent	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	60960432	138395775	2817656	33	75776										
EGR2	0	genome.wustl.edu	37	chr10	64573499	64573499	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cggcggcggctgctgctgctGctgagctgctaccaggcagc	16	14	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	10	64573499	64573499	G	T	SNP	EGR2	ENST00000242480	human	ensembl	69_37n	-1	known	missense	c.899	p.A300E	0.990	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877	22	0	0	1	10	90.91	-	-	-	T	64573499	G	T	64573499	3	4	946	1	0	0	0	0	1	0	0	0	5007	1319	46	4	535	4	EGR2	10	64573499	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		64573499	70961248	34	75777										
UNC5B	0	genome.wustl.edu	37	chr10	73048351	73048351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gggcgtggacggagtggagcAagtggtcagcctgcagcact	18	9	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	10	73048351	73048351	A	C	SNP	UNC5B	ENST00000335350	human	ensembl	69_37n	1	known	missense	c.928	p.K310Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Death,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5B	HGNC	ENSG00000107731	26	0	0	6	16	72.73	-	-	-	C	73048351	A	C	73048351	3	2	946	1	0	0	0	0	1	0	0	0	17089	131	5	5	954	5	UNC5B	10	73048351	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	8474852	73048351	62486396	35	75778										
NRAP	0	genome.wustl.edu	37	chr10	115355443	115355443	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cgggatggtcggggatcaggGtgtatctgtgcagggattct	18	6	3	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	10	115355443	115355443	G	T	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	missense	c.4499	p.T1500N	0.967	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	82	0	0	45	30	40	-	-	-	T	115355443	G	T	115355443	3	4	946	1	0	0	0	0	1	0	0	0	10711	1261	44	4	737	4	NRAP	10	115355443	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	42307092	115355443	20179304	36	75779										
CHST15	0	genome.wustl.edu	37	chr10	125801928	125801928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cagataatcttccacgggatAgcggtctcgcagcccatctc	9	14	3	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	10	125801928	125801928	A	G	SNP	CHST15	ENST00000346248	human	ensembl	69_37n	-1	known	missense	c.922	p.Y308H	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	CHST15	HGNC	ENSG00000182022	55	0	0	40	37	47.44	-	-	-	G	125801928	A	G	125801928	3	3	946	1	0	0	0	0	1	0	0	0	3432	420	15	5	783	5	CHST15	10	125801928	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	10446485	125801928	9732819	37	75780										
MUC6	0	genome.wustl.edu	37	chr11	1023613	1023613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tgtactggtactcgccatggCcgtcctgcgtgtgcgtgttg	14	11	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	11	1023613	1023613	C	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.3422	p.G1141V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	116	0	0	66	48	42.11	-	-	-	A	1023613	C	A	1023613	3	1	946	1	0	0	0	0	1	0	0	0	10052	739	26	4	3929	4	MUC6	11	1023613	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09		1023613	133982903	38	75781										
DBX1	0	genome.wustl.edu	37	chr11	20178187	20178187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	caggggctccgggggacgcaCgggggcggggagtggagtcg	24	9	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	11	20178187	20178187	C	T	SNP	DBX1	ENST00000227256	human	ensembl	69_37n	-1	known	missense	c.722	p.R241H	0.000	superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	DBX1	HGNC	ENSG00000109851	12	0	0	8	6	42.86	-	-	-	T	20178187	C	T	20178187	3	4	946	1	0	0	0	0	1	0	0	0	4291	536	19	1	430	1	DBX1	11	20178187	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	19154574	20178187	114828329	39	75782										
FOLH1	0	genome.wustl.edu	37	chr11	49194915	49194915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tttgtttgtattaccttcctTtttcagtgttccaaagctcc	5	10	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	11	49194915	49194915	T	C	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.1219	p.K407E	0.180	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	175	0	0	109	70	38.89	-	-	-	C	49194915	T	C	49194915	3	2	946	1	0	0	0	0	1	0	0	0	6025	1850	64	5	1073	5	FOLH1	11	49194915	Missense_Mutation	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09	29016728	49194915	85811601	40	75783										
OR5I1	0	genome.wustl.edu	37	chr11	55703337	55703338	+	Frame_Shift_Ins	INS	-	-	A													0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gcaggggagggaggtcacagINSaaaaaatgattaataacatt							TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	11	55703337	55703338	-	A	INS	OR5I1	ENST00000301532	human	ensembl	69_37n	-1	known	frame_shift_ins	c.540_539	p.C181fs	1.000:1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	44	0	0	28	17	37.78	-	-	-	A	55703338	-	A	55703337	7	5	946	1	0	1	1	0	0	0	0	0	11237	933	33	0	407	0	OR5I1	11	55703337	Frame_Shift_Ins	INS	-	TCGA-HN-A2NL-01A-11D-A18P-09	6508422	55703337	79303179	41	75784										
RBM4B	0	genome.wustl.edu	37	chr11	66436729	66436729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	taccaggggcagtccgaagcCggcttgtggacaactgcaca	13	12	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	11	66436729	66436729	C	T	SNP	RBM4B	ENST00000310046	human	ensembl	69_37n	-1	known	missense	c.446	p.R149Q	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914	40	0	0	16	18	52.94	-	-	-	T	66436729	C	T	66436729	3	4	946	1	0	0	0	0	1	0	0	0	13225	652	23	1	637	1	RBM4B	11	66436729	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	10733392	66436729	68569787	42	75785										
FKBP4	0	genome.wustl.edu	37	chr12	2909686	2909686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ctggcctctcacctcaacctGgccatgtgtcatctgaaact	7	15	4	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	2909686	2909686	G	A	SNP	FKBP4	ENST00000001008	human	ensembl	69_37n	1	known	silent	c.975	p.L325	1.000	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478	29	0	0	25	13	33.33	-	-	-	A	2909686	G	A	2909686	2	1	946	1	0	0	0	0	0	0	0	1	5956	1335	47	4		4	FKBP4	12	2909686	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		2909686	130942209	43	75786										
PDE3A	0	genome.wustl.edu	37	chr12	20522466	20522466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gctggtgaggctggtccgcgGggaggtcggctgtgacctgg	21	9	0	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	20522466	20522466	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	missense	c.248	p.G83E	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	27	0	0	20	11	34.38	-	-	-	A	20522466	G	A	20522466	3	1	946	1	0	0	0	0	1	0	0	0	11710	1232	43	4	250	4	PDE3A	12	20522466	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	17612780	20522466	113329429	44	75787										
KIF21A	0	genome.wustl.edu	37	chr12	39711981	39711981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	agaaggaggtgaaagactagCctctgaagttccagaatctg	12	7	2	5			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	39711981	39711981	C	G	SNP	KIF21A	ENST00000395670	human	ensembl	69_37n	-1	known	missense	c.3802	p.A1268P	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	99	1	1	18	38	67.86	-	-	-	G	39711981	C	G	39711981	3	3	946	1	0	0	0	0	1	0	0	0	8340	739	26	4	1262	4	KIF21A	12	39711981	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	19189515	39711981	94139914	45	75788										
MARS	0	genome.wustl.edu	37	chr12	57910296	57910296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	aggtggcgaaactcttggatCtaaagaaacagttggctgta	12	6	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	57910296	57910296	C	G	SNP	MARS	ENST00000262027	human	ensembl	69_37n	1	known	missense	c.2635	p.L879V	1.000	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986	43	0	0	29	19	39.58	-	-	-	G	57910296	C	G	57910296	3	3	946	1	0	0	0	0	1	0	0	0	9387	912	32	2	2717	2	MARS	12	57910296	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	18198315	57910296	75941599	46	75789										
NAV3	0	genome.wustl.edu	37	chr12	78513280	78513280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	aaattccaaaatctgctgccAttggcgggaagtcaaatgca	9	9	2	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	78513280	78513280	A	G	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	1	known	missense	c.3304	p.I1102V	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	43	0	0	21	13	38.24	-	-	-	G	78513280	A	G	78513280	3	3	946	1	0	0	0	0	1	0	0	0	10257	217	8	5	3362	5	NAV3	12	78513280	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	20602984	78513280	55338615	47	75790										
SUDS3	0	genome.wustl.edu	37	chr12	118823947	118823947	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	caggaatatcagaagagaatGaaaaaactagatcagcagta	9	5	2	4			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	12	118823947	118823947	G	C	SNP	SUDS3	ENST00000397564	human	ensembl	69_37n	1	known	missense	c.297	p.M99I	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707	59	0	0	63	28	30.77	-	-	-	C	118823947	G	C	118823947	3	2	946	1	0	0	0	0	1	0	0	0	15458	1290	45	2	311	2	SUDS3	12	118823947	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	40310667	118823947	15027948	48	75791										
MYO16	0	genome.wustl.edu	37	chr13	109777494	109777494	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttagcacgccagcacctgctTcagagaataagcatcagaca	8	12	2	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	13	109777494	109777494	T	C	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	1	known	silent	c.3504	p.L1168	0.996	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	65	0	0	50	39	43.33	-	-	-	C	109777494	T	C	109777494	2	2	946	1	0	0	0	0	0	0	0	1	10136	1770	62	5		5	MYO16	13	109777494	Silent	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09		109777494	5392384	49	75792										
VPS13C	0	genome.wustl.edu	37	chr15	62243152	62243152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gaaactagttacctttgtcaGtaacattttcagaaggggtt	9	6	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	15	62243152	62243152	G	T	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.4528	p.L1510M	0.002	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	49	0	0	8	31	79.49	-	-	-	T	62243152	G	T	62243152	3	4	946	1	0	0	0	0	1	0	0	0	17288	1020	36	4	6945	4	VPS13C	15	62243152	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		62243152	40288240	50	75793										
TBC1D2B	0	genome.wustl.edu	37	chr15	78305580	78305580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gaggtagagagtcttcagatCcaacgcgcggaccttggcaa	13	10	2	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	15	78305580	78305580	C	A	SNP	TBC1D2B	ENST00000300584	human	ensembl	69_37n	-1	known	missense	c.1855	p.D619Y	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	43	0	0	7	11	61.11	-	-	-	A	78305580	C	A	78305580	3	1	946	1	0	0	0	0	1	0	0	0	15711	855	30	2	1056	2	TBC1D2B	15	78305580	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	16062428	78305580	24225812	51	75794										
ABAT	0	genome.wustl.edu	37	chr16	8875208	8875208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tgacaaatccattcgtttccGtcccacgctggtcttcaggg	9	13	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	16	8875208	8875208	G	A	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	1	known	missense	c.1424	p.R475H	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	73	0	0	12	39	75	-	-	-	A	8875208	G	A	8875208	3	1	946	1	0	0	0	0	1	0	0	0	27	1145	40	1	1482	1	ABAT	16	8875208	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		8875208	81479545	52	75795										
PDPR	0	genome.wustl.edu	37	chr16	70177496	70177496	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gtgggccacattgtgcatacTggcatgctcaacgagggtgg	15	9	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	16	70177496	70177496	T	C	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	silent	c.1689	p.T563	0.001	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	130	0	0	72	23	24.21	-	-	-	C	70177496	T	C	70177496	2	2	946	1	0	0	0	0	0	0	0	1	11762	1567	55	5		5	PDPR	16	70177496	Silent	SNP	T	TCGA-HN-A2NL-01A-11D-A18P-09	61302288	70177496	20177257	53	75796										
GUCY2D	0	genome.wustl.edu	37	chr17	7911260	7911260	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	acctgctaggtggcccagggGagtcgatcaagtctgggtgc	16	10	2	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	17	7911260	7911260	G	T	SNP	GUCY2D	ENST00000254854	human	ensembl	69_37n	1	known	silent	c.1578	p.G526	0.981	smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	24	0	0	26	12	31.58	-	-	-	T	7911260	G	T	7911260	2	4	946	1	0	0	0	0	0	0	0	1	6948	1161	41	2		2	GUCY2D	17	7911260	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		7911260	73283950	54	75797										
MYO15A	0	genome.wustl.edu	37	chr17	18060272	18060272	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	cctctggctgacccaggactCtgactacgtggtcgctgtga	12	13	2	3			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	17	18060272	18060272	C	G	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	1	known	missense	c.8606	p.S2869C	1.000	superfamily_SH3_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	50	0	0	30	24	44.44	-	-	-	G	18060272	C	G	18060272	3	3	946	1	0	0	0	0	1	0	0	0	10135	913	32	2	8792	2	MYO15A	17	18060272	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	10149012	18060272	63134938	55	75798										
SLC5A10	0	genome.wustl.edu	37	chr17	18874526	18874526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ccacctggtactggtgcaccGaccaggtgagtgccaacgtc	12	14	0	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	17	18874526	18874526	G	A	SNP	SLC5A10	ENST00000395647	human	ensembl	69_37n	1	known	missense	c.841	p.D281N	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025	42	0	0	34	25	42.37	-	-	-	A	18874526	G	A	18874526	3	1	946	1	0	0	0	0	1	0	0	0	14751	1058	37	1	871	1	SLC5A10	17	18874526	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	814254	18874526	62320684	56	75799										
NWD1	0	genome.wustl.edu	37	chr19	16918863	16918863	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gaggtcagccacaaggagcaGctggtggtcagcgggtctga	17	9	3	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	19	16918863	16918863	G	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.4203	p.Q1401H	0.982	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	63	0	0	30	39	56.52	-	-	-	C	16918863	G	C	16918863	3	2	946	1	0	0	0	0	1	0	0	0	10854	962	34	4	3852	4	NWD1	19	16918863	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		16918863	42210120	57	75800										
ZNF99	0	genome.wustl.edu	37	chr19	22940729	22940729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tatgtctagtaaggtgtgagGaccacttaaaagctttacca	9	7	1	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	19	22940729	22940729	G	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1709	p.S570F	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	23	0	0	21	9	30	-	-	-	A	22940729	G	A	22940729	3	1	946	1	0	0	0	0	1	0	0	0	18297	1174	41	2	1415	2	ZNF99	19	22940729	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	6021866	22940729	36188254	58	75801										
TSHZ3	0	genome.wustl.edu	37	chr19	31768092	31768092	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ccgtcaatgtcagacttctcGgagatgctggaaggagtgga	14	8	3	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	19	31768092	31768092	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	silent	c.2607	p.S869	0.747	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	58	0	0	40	26	39.39	-	-	-	A	31768092	G	A	31768092	2	1	946	1	0	0	0	0	0	0	0	1	16721	1103	39	1		1	TSHZ3	19	31768092	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	8827363	31768092	27360891	59	75802										
RBM42	0	genome.wustl.edu	37	chr19	36125255	36125255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	gagcagctgggaggaccccaGcctgctggagtgggatgcag	18	10	0	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	19	36125255	36125255	G	T	SNP	RBM42	ENST00000262633	human	ensembl	69_37n	1	known	missense	c.1115	p.S372I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254	35	0	0	18	14	43.75	-	-	-	T	36125255	G	T	36125255	3	4	946	1	0	0	0	0	1	0	0	0	13219	971	34	4	1145	4	RBM42	19	36125255	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	4357163	36125255	23003728	60	75803										
ZNF512B	0	genome.wustl.edu	37	chr20	62594493	62594493	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tggtagtcgtggccagccttGgatcggtacgtcttgccaca	13	11	1	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	20	62594493	62594493	G	C	SNP	ZNF512B	ENST00000217130	human	ensembl	69_37n	-1	known	silent	c.1923	p.S641	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700	25	0	0	9	6	40	-	-	-	C	62594493	G	C	62594493	2	2	946	1	0	0	0	0	0	0	0	1	18053	1335	47	4		4	ZNF512B	20	62594493	Silent	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		62594493	431027	61	75804										
MX1	0	genome.wustl.edu	37	chr21	42824760	42824760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	tcggcaacagactcttccatGgaggagatctttcagcacct	9	12	3	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	21	42824760	42824760	G	A	SNP	MX1	ENST00000398598	human	ensembl	69_37n	1	known	missense	c.1722	p.M574I	0.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	73	0	0	10	18	64.29	-	-	-	A	42824760	G	A	42824760	3	1	946	1	0	0	0	0	1	0	0	0	10069	1348	47	4	1768	4	MX1	21	42824760	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		42824760	5305135	62	75805										
SLC2A11	0	genome.wustl.edu	37	chr22	24204354	24204354	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttggtgggacttttcagtttGgctataacctctctatcatc	8	9	3	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	22	24204354	24204354	G	C	SNP	SLC2A11	ENST00000398356	human	ensembl	69_37n	1	known	missense	c.106	p.G36R	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A11	HGNC	ENSG00000133460	119	0	0	16	71	81.61	-	-	-	C	24204354	G	C	24204354	3	2	946	1	0	0	0	0	1	0	0	0	14629	1348	47	4	171	4	SLC2A11	22	24204354	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		24204354	27100212	63	75806										
ARSH	0	genome.wustl.edu	37	chrX	2936644	2936644	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	actccactcatctccaaaaaGaagtttgttgggcgcagtaa	8	10	2	1			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	X	2936644	2936644	G	T	SNP	ARSH	ENST00000381130	human	ensembl	69_37n	1	known	missense	c.834	p.K278N	0.021	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSH	HGNC	ENSG00000205667	112	0	0	137	41	22.91	-	-	-	T	2936644	G	T	2936644	3	4	946	1	0	0	0	0	1	0	0	0	997	933	33	2	852	2	ARSH	23	2936644	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09		2936644	152333916	64	75807										
TRO	0	genome.wustl.edu	37	chrX	54956593	54956593	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ttggtggtgctcatggcaccAgcctctgttttggtggagct	14	9	2	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	X	54956593	54956593	A	T	SNP	TRO	ENST00000173898	human	ensembl	69_37n	1	known	missense	c.3436	p.S1146C	0.006	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	71	0	0	42	28	40	-	-	-	T	54956593	A	T	54956593	3	4	946	1	0	0	0	0	1	0	0	0	16670	188	7	5	3478	5	TRO	23	54956593	Missense_Mutation	SNP	A	TCGA-HN-A2NL-01A-11D-A18P-09	52019949	54956593	100313967	65	75808										
CSTF2	0	genome.wustl.edu	37	chrX	100087875	100087875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	aggacccatgctagatcagaGgggtccacccttggatggca	13	11	1	2			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	X	100087875	100087875	G	T	SNP	CSTF2	ENST00000415585	human	ensembl	69_37n	1	known	missense	c.1244	p.R415M	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811	37	0	0	17	25	59.52	-	-	-	T	100087875	G	T	100087875	3	4	946	1	0	0	0	0	1	0	0	0	4016	1000	35	4	1222	4	CSTF2	23	100087875	Missense_Mutation	SNP	G	TCGA-HN-A2NL-01A-11D-A18P-09	45131282	100087875	55182685	66	75809										
CLDN2	0	genome.wustl.edu	37	chrX	106171891	106171891	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0606060606060606	4	0.828805203053759	1.13008130081301	2.42160278745645	0	0.06993006993007	0.478262995745514	0	ggaatcttcatgggatcctaCgggacttctactcaccactg	9	12	4	0			TCGA-HN-A2NL-01A-11D-A18P-09	TCGA-HN-A2NL-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73d09eab-d3f5-442d-aea8-690b282fd68a	e21e6d93-3bb6-4ba1-8c65-e20c13cfdf16	X	106171891	106171891	C	T	SNP	CLDN2	ENST00000336803	human	ensembl	69_37n	1	known	missense	c.433	p.R145W	0.960	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin2,prints_Claudin,prints_Claudin14	-	no_errors	CLDN2	HGNC	ENSG00000165376	141	0	0	63	42	40	-	-	-	T	106171891	C	T	106171891	3	4	946	1	0	0	0	0	1	0	0	0	3511	527	19	1	435	1	CLDN2	23	106171891	Missense_Mutation	SNP	C	TCGA-HN-A2NL-01A-11D-A18P-09	6084016	106171891	49098669	67	75810										
SRM	0	genome.wustl.edu	37	chr1	11116774	11116774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	tcgagctagagtagccaatgGccatgcctggcaggaacttc	12	11	0	1			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	1	11116774	11116774	G	A	SNP	SRM	ENST00000376957	human	ensembl	69_37n	-1	known	missense	c.422	p.A141V	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	-	no_errors	SRM	HGNC	ENSG00000116649	65	0	0	50	14	21.88	-	-	-	A	11116774	G	A	11116774	3	1	947	1	0	0	0	0	1	0	0	0	15242	1203	42	4	506	4	SRM	1	11116774	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09		11116774	238133847	1	75811										
BAP1	0	genome.wustl.edu	37	chr3	52440862	52440862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	taccctgcagtggcgaggccGatacgctccatgatgacccg	12	14	0	2			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	3	52440862	52440862	G	C	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.642	p.I214M	0.109	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	58	0	0	38	12	24	-	-	-	C	52440862	G	C	52440862	3	2	947	1	0	0	0	0	1	0	0	0	1315	1048	37	3	1587	3	BAP1	3	52440862	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09		52440862	145581568	2	75812										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	53	0	0	48	17	26.15	-	-	-	A	178936082	G	A	178936082	3	1	947	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09	126495220	178936082	19086348	3	75813										
HTT	0	genome.wustl.edu	37	chr4	3221994	3221994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	cgtggagttcctccaggaaaAggaagtctttaaggagttca	12	7	2	0			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	4	3221994	3221994	A	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	1	known	missense	c.7328	p.K2443T	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	47	0	0	41	13	24.07	-	-	-	C	3221994	A	C	3221994	3	2	947	1	0	0	0	0	1	0	0	0	7511	72	3	5	7538	5	HTT	4	3221994	Missense_Mutation	SNP	A	TCGA-HN-A2OB-01A-21D-A27P-09		3221994	187932282	4	75814										
RGS12	0	genome.wustl.edu	37	chr4	3319691	3319691	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	cagcccccgctgaatgccccGaagagggagtggtccaggaa	14	13	0	2			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	4	3319691	3319691	G	A	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	1	known	silent	c.1794	p.P598	0.128	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	56	0	0	35	4	10.26	-	-	-	A	3319691	G	A	3319691	2	1	947	1	0	0	0	0	0	0	0	1	13379	1045	37	1		1	RGS12	4	3319691	Silent	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09	97697	3319691	187834585	5	75815										
RNF170	0	genome.wustl.edu	37	chr8	42729139	42729139	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	gttttctgggtgaatgttttGatgtacatttctgttgaata	10	3	2	3			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	8	42729139	42729139	G	C	SNP	RNF170	ENST00000527424	human	ensembl	69_37n	-1	known	missense	c.148	p.Q50E	1.000	NULL	pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF170	HGNC	ENSG00000120925	57	0	0	55	8	12.7	-	-	-	C	42729139	G	C	42729139	3	2	947	1	0	0	0	0	1	0	0	0	13548	1299	45	2	859	2	RNF170	8	42729139	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09		42729139	103634883	6	75816										
DNTT	0	genome.wustl.edu	37	chr10	98092260	98092260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	agtgaccagtccagctggcaGgaaggaaagacctggaaggc	15	9	0	2			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	10	98092260	98092260	G	T	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	1	known	missense	c.1266	p.Q422H	0.975	smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	62	0	0	62	7	10.14	-	-	-	T	98092260	G	T	98092260	3	4	947	1	0	0	0	0	1	0	0	0	4715	991	35	4	1300	4	DNTT	10	98092260	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09		98092260	37442487	7	75817										
OR52B2	0	genome.wustl.edu	37	chr11	6191379	6191379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	tgagaggaagaaatacatggGcacatgaaggttacgttcca	12	6	0	3			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	6191379	6191379	G	A	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	missense	c.178	p.P60S	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	63	0	0	61	10	14.08	-	-	-	A	6191379	G	A	6191379	3	1	947	1	0	0	0	0	1	0	0	0	11184	1203	42	4	796	4	OR52B2	11	6191379	Missense_Mutation	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09		6191379	128815137	8	75818										
SPON1	0	genome.wustl.edu	37	chr11	14281248	14281248	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	gtgcatgatgccagagtgccGtgagtgagagcgggggtgga	20	6	0	4			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	14281248	14281248	G	A	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	91	0	0	59	9	13.24	-	-	-	A	14281248	G	A	14281248	5	1	947	1	0	0	0	0	0	0	1	0	15173	1159	40	1	1881	1	SPON1	11	14281248	Splice_Site	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09	8089869	14281248	120725268	9	75819										
FADS1	0	genome.wustl.edu	37	chr11	61582572	61582572	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	ttgtgcaaggtaaggtccatGgcgataagattcacgttggc	13	7	1	1			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	61582572	61582572	G	A	SNP	FADS1	ENST00000541683	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FADS1	HGNC	ENSG00000149485	114	0	0	59	22	27.16	-	-	-	A	61582572	G	A	61582572	1	1	947	0	1	0	0	0	0	0	0	0	5405	1363	47	4		4	FADS1	11	61582572	RNA	SNP	G	TCGA-HN-A2OB-01A-21D-A27P-09	47301324	61582572	73423944	10	75820										
OR7D2	0	genome.wustl.edu	37	chr19	9297079	9297080	+	Frame_Shift_Ins	INS	-	-	T													0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	tatgacgggtgtgctgggcgINStttttcccctccttgggatc							TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	19	9297079	9297080	-	T	INS	OR7D2	ENST00000344248	human	ensembl	69_37n	1	known	frame_shift_ins	c.622_623	p.P210fs	0.001:0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	65	0	0	34	9	20.93	-	-	-	T	9297080	-	T	9297079	7	5	947	1	0	1	1	0	0	0	0	0	11292	1145	40	0	624	0	OR7D2	19	9297079	Frame_Shift_Ins	INS	-	TCGA-HN-A2OB-01A-21D-A27P-09		9297079	49831904	11	75821										
C1GALT1C1	0	genome.wustl.edu	37	chrX	119760370	119760370	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	2	0.687646454124763	1.65	3.3	1.1	1	1	0	tgctagctgtttatcttcagAtatcttccaaatcatccctc	4	12	4	1			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	X	119760370	119760370	A	T	SNP	C1GALT1C1	ENST00000304661	human	ensembl	69_37n	-1	known	missense	c.652	p.S218T	0.953	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155	69	0	0	59	7	10.61	-	-	-	T	119760370	A	T	119760370	3	4	947	1	0	0	0	0	1	0	0	0	1972	333	12	5	308	5	C1GALT1C1	23	119760370	Missense_Mutation	SNP	A	TCGA-HN-A2OB-01A-21D-A27P-09		119760370	35510190	12	75822										
TARDBP	0	genome.wustl.edu	37	chr1	11076915	11076915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	atttagataacaaaagaaaaAtggatgagacagatgcttca	8	4	1	4			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	11076915	11076915	A	G	SNP	TARDBP	ENST00000240185	human	ensembl	69_37n	1	known	missense	c.253	p.M85V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TARDBP	HGNC	ENSG00000120948	45	0	0	72	24	25	-	-	-	G	11076915	A	G	11076915	3	3	948	1	0	0	0	0	1	0	0	0	15649	101	4	5	259	5	TARDBP	1	11076915	Missense_Mutation	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09		11076915	238173706	1	75823										
CROCC	0	genome.wustl.edu	37	chr1	17250935	17250935	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gcccagagccgtgccgagcgCgatgagctcgccattaagta	13	13	0	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	17250935	17250935	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	silent	c.312	p.R104	0.121	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	58	0	0	68	19	21.84	-	-	-	T	17250935	C	T	17250935	2	4	948	1	0	0	0	0	0	0	0	1	3923	755	27	1		1	CROCC	1	17250935	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	6174020	17250935	231999686	2	75824										
C1orf63	0	genome.wustl.edu	37	chr1	25572984	25572985	+	Frame_Shift_Del	DEL	TC	TC	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ctccgcgacctcgtcctggaTctgtccctccatctgctgtg							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	25572984	25572985	TC	-	DEL	C1orf63	ENST00000417642	human	ensembl	69_37n	-1	known	frame_shift_del	c.450_449	p.R150fs	0.009:0.020	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616	65	0	0	75	9	10.71	-	-	-	-	25572985	TC	-	25572984	7	5	948	1	0	1	0	1	0	0	0	0	2073	1432	50	0	417	0	C1orf63	1	25572984	Frame_Shift_Del	DEL	TC	TCGA-JL-A3YW-01A-12D-A23C-09	8322049	25572984	223677637	3	75825										
ACOT11	0	genome.wustl.edu	37	chr1	55067005	55067005	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gagacccaccggcgccacatCaacagtgcctttatgacctt	8	15	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	55067005	55067005	C	A	SNP	ACOT11	ENST00000371316	human	ensembl	69_37n	1	known	silent	c.948	p.I316	1.000	NULL	pfam_START_lipid-bd,pfam_Thioestr_supf,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	ACOT11	HGNC	ENSG00000162390	83	0	0	66	12	15.38	-	-	-	A	55067005	C	A	55067005	2	1	948	1	0	0	0	0	0	0	0	1	149	816	29	2		2	ACOT11	1	55067005	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	29494021	55067005	194183616	4	75826										
KIAA1324	0	genome.wustl.edu	37	chr1	109737206	109737206	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tcactttaccctcagtctctGtggaaaccaggtaaggtata	8	10	3	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	109737206	109737206	G	C	SNP	KIAA1324	ENST00000369939	human	ensembl	69_37n	1	known	missense	c.2111	p.C704S	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324	HGNC	ENSG00000116299	27	0	0	26	5	16.13	-	-	-	C	109737206	G	C	109737206	3	2	948	1	0	0	0	0	1	0	0	0	8275	1377	48	4	2169	4	KIAA1324	1	109737206	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	54670201	109737206	139513415	5	75827										
POLR3C	0	genome.wustl.edu	37	chr1	145608455	145608455	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tttcttcacaacagctgacaTtgtcagtttgccgttcaaca	6	11	4	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	145608455	145608455	T	C	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.352	p.M118V	1.000	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	58	0	0	46	35	43.21	-	-	-	C	145608455	T	C	145608455	3	2	948	1	0	0	0	0	1	0	0	0	12304	1493	52	5	1304	5	POLR3C	1	145608455	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	35871249	145608455	103642166	6	75828										
PI4KB	0	genome.wustl.edu	37	chr1	151274425	151274425	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ttggggagatggccgtagggGgagccctctctgatccgcct	16	11	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	151274425	151274425	G	T	SNP	PI4KB	ENST00000271657	human	ensembl	69_37n	-1	known	silent	c.1680	p.S560	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	36	0	0	49	6	10.91	-	-	-	T	151274425	G	T	151274425	2	4	948	1	0	0	0	0	0	0	0	1	11948	1219	43	4		4	PI4KB	1	151274425	Silent	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	5665970	151274425	97976196	7	75829										
EFNA4	0	genome.wustl.edu	37	chr1	155039911	155039911	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ggtgtctgtctgctgcaaggAgaggagtaagtgggttggga	19	4	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	155039911	155039911	A	T	SNP	EFNA4	ENST00000427683	human	ensembl	69_37n	1	known	missense	c.464	p.E155V	1.000	pfam_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364	101	0	0	90	14	13.46	-	-	-	T	155039911	A	T	155039911	3	4	948	1	0	0	0	0	1	0	0	0	4988	304	11	5	474	5	EFNA4	1	155039911	Missense_Mutation	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09	3765486	155039911	94210710	8	75830										
VSIG8	0	genome.wustl.edu	37	chr1	159832270	159832273	+	Frame_Shift_Del	DEL	CAGG	CAGG	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cccagccccgtacctgggctCaggcacacgagtagaaggtg							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	CAGG	CAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	1	159832270	159832273	CAGG	-	DEL	VSIG8	ENST00000368100	human	ensembl	69_37n	-1	known	frame_shift_del	c.42_39	p.C13fs	1.000:1.000:1.000:1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	VSIG8	HGNC	ENSG00000243284	98	0	0	81	45	35.16	-	-	-	-	159832273	CAGG	-	159832270	7	5	948	1	0	1	0	1	0	0	0	0	17323	813	29	0	1230	0	VSIG8	1	159832270	Frame_Shift_Del	DEL	CAGG	TCGA-JL-A3YW-01A-12D-A23C-09	4792359	159832270	89418351	9	75831										
SF3B14	0	genome.wustl.edu	37	chr2	24291245	24291245	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ctgttacaaacattgaatccCgataggtgatcacatgcatt	7	9	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	24291245	24291245	C	G	SNP	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	silent	c.234	p.S78	0.972	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	50	0	0	58	17	22.67	-	-	-	G	24291245	C	G	24291245	2	3	948	1	0	0	0	0	0	0	0	1	14238	639	23	3		3	SF3B14	2	24291245	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		24291245	218908128	10	75832										
PPM1B	0	genome.wustl.edu	37	chr2	44396108	44396108	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gttgcgggggagtttcctgcCggcgcggctggagtctctga	18	10	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	44396108	44396108	C	T	SNP	PPM1B	ENST00000378540	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032	161	0	0	235	71	23.2	-	-	-	T	44396108	C	T	44396108	1	4	948	0	1	0	0	0	0	0	0	0	12413	667	23	1		1	PPM1B	2	44396108	RNA	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	20104863	44396108	198803265	11	75833										
USP34	0	genome.wustl.edu	37	chr2	61607496	61607496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tccgagagcttgcataaataCctgaaatgattcagaaatag	8	7	1	4			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	61607496	61607496	C	A	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.822	p.R274S	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	11	0	0	18	5	21.74	-	-	-	A	61607496	C	A	61607496	3	1	948	1	0	0	0	0	1	0	0	0	17162	521	18	4	10114	4	USP34	2	61607496	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	17211388	61607496	181591877	12	75834										
KDM3A	0	genome.wustl.edu	37	chr2	86693921	86693921	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtagaaccttcagctttagcTtgccgatcacagaatttaaa	7	9	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	86693921	86693921	T	C	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	1	known	silent	c.1434	p.A478	0.010	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	38	0	0	55	12	17.91	-	-	-	C	86693921	T	C	86693921	2	2	948	1	0	0	0	0	0	0	0	1	8180	1596	56	5		5	KDM3A	2	86693921	Silent	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	25086425	86693921	156505452	13	75835										
PKP4	0	genome.wustl.edu	37	chr2	159499112	159499112	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tcgtttttggcaagtctacaGatgaaaataaaatagcaatg	8	5	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	159499112	159499112	G	T	SNP	PKP4	ENST00000389759	human	ensembl	69_37n	1	known	missense	c.1810	p.D604Y	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	72	0	0	97	33	25.38	-	-	-	T	159499112	G	T	159499112	3	4	948	1	0	0	0	0	1	0	0	0	12061	942	33	2	1848	2	PKP4	2	159499112	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	72805191	159499112	83700261	14	75836										
BAZ2B	0	genome.wustl.edu	37	chr2	160318673	160318673	+	RNA	DEL	A	A	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	acattaaatgtggcagaattAaaaaaaaaagacttacactt							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	160318673	160318673	A	-	DEL	BAZ2B	ENST00000483316	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	18	0	0	9	4	28.57	-	-	-	-	160318673	A	-	160318673	6	5	948	0	1	1	0	1	0	0	0	0	1336	377	13	0		0	BAZ2B	2	160318673	RNA	DEL	A	TCGA-JL-A3YW-01A-12D-A23C-09	819561	160318673	82880700	15	75837										
LRP2	0	genome.wustl.edu	37	chr2	170003328	170003328	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tccttgaagtcactccagtaGattcggtcattgttcaaata	7	9	3	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	2	170003328	170003328	G	C	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.12732	p.I4244M	1.000	superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	87	0	0	106	34	24.29	-	-	-	C	170003328	G	C	170003328	3	2	948	1	0	0	0	0	1	0	0	0	9022	932	33	2	1279	2	LRP2	2	170003328	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	9684655	170003328	73196045	16	75838										
LTF	0	genome.wustl.edu	37	chr3	46496886	46496886	+	Frame_Shift_Del	DEL	T	T	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cacaggttggggaactgtccTttatctgcaccgggaacaca							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	46496886	46496886	T	-	DEL	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	frame_shift_del	c.546	p.G183fs	0.000	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	93	0	0	114	32	21.62	-	-	-	-	46496886	T	-	46496886	7	5	948	1	0	1	0	1	0	0	0	0	9145	1606	56	0	1638	0	LTF	3	46496886	Frame_Shift_Del	DEL	T	TCGA-JL-A3YW-01A-12D-A23C-09		46496886	151525544	17	75839										
COL7A1	0	genome.wustl.edu	37	chr3	48617226	48617226	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	agaccctaataccttctctcTggctccaggtcctgtgtcta	7	14	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	48617226	48617226	T	G	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.5146	p.R1716	0.036	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	32	0	0	39	10	20.41	-	-	-	G	48617226	T	G	48617226	2	3	948	1	0	0	0	0	0	0	0	1	3734	1588	55	5		5	COL7A1	3	48617226	Silent	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	2120340	48617226	149405204	18	75840										
FAM116A	0	genome.wustl.edu	37	chr3	57627445	57627445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ggagtgtcttagcaaaaaaaGggttggttactcctaatata	10	5	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	57627445	57627445	G	A	SNP	FAM116A	ENST00000311128	human	ensembl	69_37n	-1	known	missense	c.1067	p.P356L	1.000	pfam_Afi1_N,pfam_DENN_dom	pfam_Afi1_N,pfam_Secretory_pathway_prot_Avl9,pfam_DENN_dom	-	no_errors	FAM116A	HGNC	ENSG00000174839	49	0	0	60	7	10.45	-	-	-	A	57627445	G	A	57627445	3	1	948	1	0	0	0	0	1	0	0	0	5447	1000	35	4	795	4	FAM116A	3	57627445	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	9010219	57627445	140394985	19	75841										
FAM194A	0	genome.wustl.edu	37	chr3	150421606	150421606	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cctcttcctcctcctcctccTcctctaactcctcctctgac	1	23	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	150421606	150421606	T	A	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	missense	c.80	p.E27V	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	33	0	0	37	12	24	-	-	-	A	150421606	T	A	150421606	3	1	948	1	0	0	0	0	1	0	0	0	5568	1551	54	5	1967	5	FAM194A	3	150421606	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	92794161	150421606	47600824	20	75842										
SMC4	0	genome.wustl.edu	37	chr3	160132222	160132222	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ttacacagctagatttggaaGatgttcaagttagagaaaag	10	4	1	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	160132222	160132222	G	A	SNP	SMC4	ENST00000344722	human	ensembl	69_37n	1	known	missense	c.1189	p.D397N	1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	27	0	0	17	4	19.05	-	-	-	A	160132222	G	A	160132222	3	1	948	1	0	0	0	0	1	0	0	0	14874	942	33	2	1219	2	SMC4	3	160132222	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	9710616	160132222	37890208	21	75843										
LRRC33	0	genome.wustl.edu	37	chr3	196387261	196387261	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gcgaccgggggagaggctgcCttcgagctggagacgctgga	19	10	0	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	3	196387261	196387261	C	A	SNP	LRRC33	ENST00000328557	human	ensembl	69_37n	1	known	silent	c.747	p.A249	0.930	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC33	HGNC	ENSG00000174004	86	0	0	113	17	13.08	-	-	-	A	196387261	C	A	196387261	2	1	948	1	0	0	0	0	0	0	0	1	9054	668	24	4		4	LRRC33	3	196387261	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	36255039	196387261	1635169	22	75844										
PARP8	0	genome.wustl.edu	37	chr5	50090941	50090941	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ttgccctgcagctgttaagtCagaggaatgcctaactctaa	9	10	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	50090941	50090941	C	T	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	1	known	missense	c.1118	p.S373L	0.753	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	51	0	0	71	19	21.11	-	-	-	T	50090941	C	T	50090941	3	4	948	1	0	0	0	0	1	0	0	0	11538	838	29	2	1164	2	PARP8	5	50090941	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		50090941	130824319	23	75845										
CEP120	0	genome.wustl.edu	37	chr5	122748104	122748104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgcacaaaccttttccatctCgagggggagccccctttgct	9	14	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	122748104	122748104	C	T	SNP	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	missense	c.452	p.R151Q	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	51	0	0	45	12	21.05	-	-	-	T	122748104	C	T	122748104	3	4	948	1	0	0	0	0	1	0	0	0	3275	884	31	1	2576	1	CEP120	5	122748104	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	72657163	122748104	58167156	24	75846										
MXD3	0	genome.wustl.edu	37	chr5	176734175	176734175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgggtctgtggttgggagttCccccgttttcattaggcaag	14	8	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	5	176734175	176734175	C	A	SNP	MXD3	ENST00000427908	human	ensembl	69_37n	-1	known	missense	c.527	p.G176V	0.136	NULL	pfam_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MXD3	HGNC	ENSG00000213347	47	0	0	58	16	21.62	-	-	-	A	176734175	C	A	176734175	3	1	948	1	0	0	0	0	1	0	0	0	10072	855	30	2	58	2	MXD3	5	176734175	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	53986071	176734175	4181085	25	75847										
KCTD20	0	genome.wustl.edu	37	chr6	36454815	36454815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	agtgtgttcgaagcaaatccCtcacgaatctggtagctgct	10	10	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	6	36454815	36454815	C	G	SNP	KCTD20	ENST00000373731	human	ensembl	69_37n	1	known	missense	c.1123	p.L375V	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078	38	0	0	35	7	16.67	-	-	-	G	36454815	C	G	36454815	3	3	948	1	0	0	0	0	1	0	0	0	8162	681	24	4	1149	4	KCTD20	6	36454815	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		36454815	134660252	26	75848										
RFPL4B	0	genome.wustl.edu	37	chr6	112671398	112671398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtcatggtccctgggcgtctGcaaggagccggctgacagaa	15	11	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	6	112671398	112671398	G	A	SNP	RFPL4B	ENST00000441065	human	ensembl	69_37n	1	known	missense	c.488	p.C163Y	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4B	HGNC	ENSG00000251258	28	0	0	34	16	32	-	-	-	A	112671398	G	A	112671398	3	1	948	1	0	0	0	0	1	0	0	0	13339	1319	46	4	490	4	RFPL4B	6	112671398	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	76216583	112671398	58443669	27	75849										
NFE2L3	0	genome.wustl.edu	37	chr7	26224265	26224265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aagtcaggatgtgaatcttcAtgaggccatcttgctttgtc	10	8	4	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	26224265	26224265	A	G	SNP	NFE2L3	ENST00000056233	human	ensembl	69_37n	1	known	missense	c.947	p.H316R	0.997	NULL	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	51	0	0	53	23	30.26	-	-	-	G	26224265	A	G	26224265	3	3	948	1	0	0	0	0	1	0	0	0	10441	217	8	5	961	5	NFE2L3	7	26224265	Missense_Mutation	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09		26224265	132914398	28	75850										
CAMK2B	0	genome.wustl.edu	37	chr7	44260459	44260459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtcaccgttgttgacggcctCgatgagctgctccgtggtct	13	12	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	44260459	44260459	C	T	SNP	CAMK2B	ENST00000395749	human	ensembl	69_37n	-1	known	missense	c.1639	p.E547K	0.999	pfam_Ca/CaM-dep_prot_kinase-assoc	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404	103	0	0	109	38	25.85	-	-	-	T	44260459	C	T	44260459	3	4	948	1	0	0	0	0	1	0	0	0	2625	893	31	1	373	1	CAMK2B	7	44260459	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	18036194	44260459	114878204	29	75851										
ASB4	0	genome.wustl.edu	37	chr7	95157289	95157289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccctggccatcgccgcctacTgggccctccgctttaaggag	11	17	0	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	95157289	95157289	T	C	SNP	ASB4	ENST00000325885	human	ensembl	69_37n	1	known	missense	c.652	p.W218R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981	44	0	0	82	12	12.77	-	-	-	C	95157289	T	C	95157289	3	2	948	1	0	0	0	0	1	0	0	0	1029	1580	55	5	662	5	ASB4	7	95157289	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	50896830	95157289	63981374	30	75852										
CALD1	0	genome.wustl.edu	37	chr7	134644791	134644791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ctgttcctgctgaaggtgtaCgcaacatcaagagtatgtgg	12	8	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	7	134644791	134644791	C	G	SNP	CALD1	ENST00000361388	human	ensembl	69_37n	1	known	missense	c.1441	p.R481G	1.000	pfam_Caldesmon_LSP,prints_Caldesmon	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786	53	0	0	81	11	11.96	-	-	-	G	134644791	C	G	134644791	3	3	948	1	0	0	0	0	1	0	0	0	2606	536	19	3	2223	3	CALD1	7	134644791	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	39487502	134644791	24493872	31	75853										
ZFHX4	0	genome.wustl.edu	37	chr8	77767800	77767800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ttcaatgacaaagatggcgaCcacgaccaaagcttttacat	7	10	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	8	77767800	77767800	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	1	known	silent	c.8643	p.D2881	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	25	0	0	33	4	10.81	-	-	-	T	77767800	C	T	77767800	2	4	948	1	0	0	0	0	0	0	0	1	17731	506	18	4		4	ZFHX4	8	77767800	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		77767800	68596222	32	75854										
TNC	0	genome.wustl.edu	37	chr9	117825203	117825203	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gagggtcatatacctgtgacGacctctacagcaaggggtcg	13	10	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	9	117825203	117825203	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.4026	p.V1342	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	71	0	0	121	21	14.79	-	-	-	A	117825203	G	A	117825203	2	1	948	1	0	0	0	0	0	0	0	1	16365	1045	37	1		1	TNC	9	117825203	Silent	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		117825203	23388228	33	75855										
DENND1A	0	genome.wustl.edu	37	chr9	126392666	126392666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccaccttaccagcagtagtcCagcagatgcggcggcagcac	11	15	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	9	126392666	126392666	C	T	SNP	DENND1A	ENST00000394219	human	ensembl	69_37n	-1	known	silent	c.612	p.L204	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	16	0	0	15	5	25	-	-	-	T	126392666	C	T	126392666	2	4	948	1	0	0	0	0	0	0	0	1	4462	581	21	4		4	DENND1A	9	126392666	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	8567463	126392666	14820765	34	75856										
TUBB8	0	genome.wustl.edu	37	chr10	93894	93894	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ctgagcagaagggtacccatCccagacccagtccccccacc	8	19	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	93894	93894	C	A	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	silent	c.438	p.G146	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	253	0	0	300	67	18.26	-	-	-	A	93894	C	A	93894	2	1	948	1	0	0	0	0	0	0	0	1	16858	842	30	2		2	TUBB8	10	93894	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		93894	135440853	35	75857										
KLF6	0	genome.wustl.edu	37	chr10	3824189	3824190	+	Frame_Shift_Del	DEL	TC	TC	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cagaggattcgctgctgacaTctgagttcaggctgttggtc							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	3824189	3824190	TC	-	DEL	KLF6	ENST00000497571	human	ensembl	69_37n	-1	known	frame_shift_del	c.320_319	p.D107fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082	58	0	0	56	16	22.22	-	-	-	-	3824190	TC	-	3824189	7	5	948	1	0	1	0	1	0	0	0	0	8403	1435	50	0	543	0	KLF6	10	3824189	Frame_Shift_Del	DEL	TC	TCGA-JL-A3YW-01A-12D-A23C-09	3730295	3824189	131710558	36	75858										
STAM	0	genome.wustl.edu	37	chr10	17730056	17730056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aagtatgtgaaaaattaaagGctcttatggttgaatggaca	10	3	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	17730056	17730056	G	A	SNP	STAM	ENST00000377524	human	ensembl	69_37n	1	known	missense	c.328	p.A110T	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738	34	0	0	42	7	14.29	-	-	-	A	17730056	G	A	17730056	3	1	948	1	0	0	0	0	1	0	0	0	15339	1203	42	4	346	4	STAM	10	17730056	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	13905867	17730056	117804691	37	75859										
DLG5	0	genome.wustl.edu	37	chr10	79552005	79552005	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	acgtgtgacacgggcagagtGtgtgggcctgggcctggatc	18	9	0	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	79552005	79552005	G	T	SNP	DLG5	ENST00000463362	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLG5	HGNC	ENSG00000151208	29	0	0	15	10	40	-	-	-	T	79552005	G	T	79552005	1	4	948	0	1	0	0	0	0	0	0	0	4594	1392	48	4		4	DLG5	10	79552005	RNA	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	61821949	79552005	55982742	38	75860										
GHITM	0	genome.wustl.edu	37	chr10	85902445	85902445	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aacaagaattgggatccggcGtgggagaactggccaagaac	14	8	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	10	85902445	85902445	G	A	SNP	GHITM	ENST00000372134	human	ensembl	69_37n	1	known	missense	c.164	p.R55H	1.000	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678	60	0	0	52	18	25.71	-	-	-	A	85902445	G	A	85902445	3	1	948	1	0	0	0	0	1	0	0	0	6422	1145	40	1	170	1	GHITM	10	85902445	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	6350440	85902445	49632302	39	75861										
OR51I1	0	genome.wustl.edu	37	chr11	5462607	5462607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	caaaacaccagagtgagaatGctgaggttacctacaatgga	10	8	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	5462607	5462607	G	T	SNP	OR51I1	ENST00000380211	human	ensembl	69_37n	-1	known	missense	c.138	p.S46R	0.391	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51I1	HGNC	ENSG00000167359	51	0	0	53	12	18.46	-	-	-	T	5462607	G	T	5462607	3	4	948	1	0	0	0	0	1	0	0	0	11173	1310	46	4	810	4	OR51I1	11	5462607	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		5462607	129543909	40	75862										
CHKA	0	genome.wustl.edu	37	chr11	67864505	67864505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccatctgcaaaatcgctccaTacagccgcaggagcactttc	7	15	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	67864505	67864505	T	C	SNP	CHKA	ENST00000265689	human	ensembl	69_37n	-1	known	missense	c.443	p.Y148C	0.999	pfam_Choline/ethanolamine_kinase,superfamily_Kinase-like_dom	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKA	HGNC	ENSG00000110721	30	0	0	17	10	37.04	-	-	-	C	67864505	T	C	67864505	3	2	948	1	0	0	0	0	1	0	0	0	3376	1406	49	5	974	5	CHKA	11	67864505	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	62401898	67864505	67142011	41	75863										
XRRA1	0	genome.wustl.edu	37	chr11	74660143	74660143	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cgacggcagacagtgtaggcGgcaaccgacggccgggacgt	17	12	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	74660143	74660143	G	C	SNP	XRRA1	ENST00000524430	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	22	0	0	34	6	15	-	-	-	C	74660143	G	C	74660143	1	2	948	0	1	0	0	0	0	0	0	0	17558	1131	39	3		3	XRRA1	11	74660143	RNA	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	6795638	74660143	60346373	42	75864										
MRE11A	0	genome.wustl.edu	37	chr11	94194110	94194110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtaagaaattaccttctctgCggtttgaaagtactgtttta	8	6	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	94194110	94194110	C	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.1318	p.A440T	0.995	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	50	0	0	60	17	22.08	-	-	-	T	94194110	C	T	94194110	3	4	948	1	0	0	0	0	1	0	0	0	9831	768	27	1	844	1	MRE11A	11	94194110	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	19533967	94194110	40812406	43	75865										
TMEM133	0	genome.wustl.edu	37	chr11	100863339	100863340	+	Frame_Shift_Del	DEL	TG	TG	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aatttcctgaacacattcacTgtatccctcattgtcaccgt							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	100863339	100863340	TG	-	DEL	TMEM133	ENST00000303130	human	ensembl	69_37n	1	known	frame_shift_del	c.300_301	p.V101fs	0.000:0.000	NULL	NULL	-	no_errors	TMEM133	HGNC	ENSG00000170647	88	0	0	94	14	12.96	-	-	-	-	100863340	TG	-	100863339	7	5	948	1	0	1	0	1	0	0	0	0	16144	1567	55	0	302	0	TMEM133	11	100863339	Frame_Shift_Del	DEL	TG	TCGA-JL-A3YW-01A-12D-A23C-09	6669229	100863339	34143177	44	75866										
DYNC2H1	0	genome.wustl.edu	37	chr11	103006345	103006346	+	Frame_Shift_Del	DEL	AT	AT	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgagaatttgccagaaataaAtatagacttaacttacaagt							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	103006345	103006346	AT	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	frame_shift_del	c.2327_2328	p.I777fs	0.998:0.918	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	41	0	0	40	13	24.53	-	-	-	-	103006346	AT	-	103006345	7	5	948	1	0	1	0	1	0	0	0	0	4881	101	4	0	2389	0	DYNC2H1	11	103006345	Frame_Shift_Del	DEL	AT	TCGA-JL-A3YW-01A-12D-A23C-09	2143006	103006345	32000171	45	75867										
CUL5	0	genome.wustl.edu	37	chr11	107965648	107965648	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gacttgataccggaagtagaAgaattctacaaaaaaaatca	7	6	2	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	11	107965648	107965648	A	G	SNP	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	silent	c.1677	p.E559	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	60	0	0	55	13	19.12	-	-	-	G	107965648	A	G	107965648	2	3	948	1	0	0	0	0	0	0	0	1	4090	69	3	5		5	CUL5	11	107965648	Silent	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09	4959303	107965648	27040868	46	75868										
ATN1	0	genome.wustl.edu	37	chr12	7050171	7050171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgcacgagaacgaagttcttCgtcaccagctctttggtaag	10	10	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	7050171	7050171	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	1	known	missense	c.3343	p.R1115C	1.000	pfam_Atrophin-like,prints_Atrophin-1	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	78	0	0	108	13	10.74	-	-	-	T	7050171	C	T	7050171	3	4	948	1	0	0	0	0	1	0	0	0	1115	884	31	1	3369	1	ATN1	12	7050171	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		7050171	126801724	47	75869										
PHB2	0	genome.wustl.edu	37	chr12	7075640	7075640	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aggttgtcagctgtgagataGatacgattctgtgatgtggc	14	5	2	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	7075640	7075640	G	A	SNP	PHB2	ENST00000546111	human	ensembl	69_37n	-1	putative	missense	c.236	p.S79F	0.946	NULL	NULL	-	no_errors	PHB2	HGNC	ENSG00000215021	113	0	0	106	55	34.16	-	-	-	A	7075640	G	A	7075640	3	1	948	1	0	0	0	0	1	0	0	0	11889	932	33	2	94	2	PHB2	12	7075640	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	25469	7075640	126776255	48	75870										
KRT2	0	genome.wustl.edu	37	chr12	53042059	53042059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ctatccaagtccaggttgcgGctgttgtccatggagaggat	13	9	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	53042059	53042059	G	T	SNP	KRT2	ENST00000309680	human	ensembl	69_37n	-1	known	missense	c.1020	p.S340R	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	131	0	0	141	21	12.96	-	-	-	T	53042059	G	T	53042059	3	4	948	1	0	0	0	0	1	0	0	0	8510	1194	42	4	919	4	KRT2	12	53042059	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	45966419	53042059	80809836	49	75871										
NAP1L1	0	genome.wustl.edu	37	chr12	76447083	76447084	+	Frame_Shift_Del	DEL	AT	AT	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgtgtttctgcttcttcttaAtagttttcaaagtgacattc							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	76447083	76447084	AT	-	DEL	NAP1L1	ENST00000261182	human	ensembl	69_37n	-1	known	frame_shift_del	c.818_817	p.I273fs	1.000:1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109	15	0	0	17	17	50	-	-	-	-	76447084	AT	-	76447083	7	5	948	1	0	1	0	1	0	0	0	0	10228	101	4	0	381	0	NAP1L1	12	76447083	Frame_Shift_Del	DEL	AT	TCGA-JL-A3YW-01A-12D-A23C-09	23405024	76447083	57404812	50	75872										
WSCD2	0	genome.wustl.edu	37	chr12	108634216	108634216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	agatcgaggccttcgacgccGccatcctgctcatccgcaac	9	17	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	108634216	108634216	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.1240	p.A414T	0.994	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	33	0	0	51	8	13.56	-	-	-	A	108634216	G	A	108634216	3	1	948	1	0	0	0	0	1	0	0	0	17504	1087	38	1	1266	1	WSCD2	12	108634216	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	32187133	108634216	25217679	51	75873										
PPTC7	0	genome.wustl.edu	37	chr12	110983717	110983717	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	acgactccctcggcttcaggGggagcgattgagagctggaa	15	10	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	12	110983717	110983717	G	C	SNP	PPTC7	ENST00000354300	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.201	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPTC7	HGNC	ENSG00000196850	80	0	0	70	16	18.6	-	-	-	C	110983717	G	C	110983717	2	2	948	1	0	0	0	0	0	0	0	1	12490	1219	43	4		4	PPTC7	12	110983717	Silent	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	2349501	110983717	22868178	52	75874										
PHF11	0	genome.wustl.edu	37	chr13	50098311	50098311	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aatattagacaaagttcattCaattccagaaaaactcatgg	5	7	3	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	50098311	50098311	C	G	SNP	PHF11	ENST00000378319	human	ensembl	69_37n	1	known	nonsense	c.728	p.S243*	0.001	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147	31	0	0	43	12	21.82	-	-	-	G	50098311	C	G	50098311	4	3	948	1	0	0	0	0	0	1	0	0	11896	838	29	2	758	2	PHF11	13	50098311	Nonsense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		50098311	65071567	53	75875										
TGDS	0	genome.wustl.edu	37	chr13	95248374	95248374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gaagaccccacggttcctccCaacacgccgccgacatctcc	7	20	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	95248374	95248374	C	A	SNP	TGDS	ENST00000261296	human	ensembl	69_37n	-1	known	missense	c.17	p.W6L	0.000	NULL	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	-	no_errors	TGDS	HGNC	ENSG00000088451	51	0	0	59	29	32.95	-	-	-	A	95248374	C	A	95248374	3	1	948	1	0	0	0	0	1	0	0	0	15909	595	21	4	1083	4	TGDS	13	95248374	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	45150063	95248374	19921504	54	75876										
ARHGEF7	0	genome.wustl.edu	37	chr13	111938540	111938540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gaaaaagctgctgcccaagcGcaaacctgaacggaagcctt	10	12	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	13	111938540	111938540	G	T	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	1	known	missense	c.2060	p.R687L	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	43	0	0	46	24	34.29	-	-	-	T	111938540	G	T	111938540	3	4	948	1	0	0	0	0	1	0	0	0	913	1087	38	3	2130	3	ARHGEF7	13	111938540	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	16690166	111938540	3231338	55	75877										
KIF26A	0	genome.wustl.edu	37	chr14	104641938	104641938	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgagctgctggtcccggaaaAggctgcagtgagtggaggca	17	8	0	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	14	104641938	104641938	A	C	SNP	KIF26A	ENST00000423312	human	ensembl	69_37n	1	known	missense	c.2813	p.K938T	0.976	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	92	0	0	56	15	21.13	-	-	-	C	104641938	A	C	104641938	3	2	948	1	0	0	0	0	1	0	0	0	8346	72	3	5	2859	5	KIF26A	14	104641938	Missense_Mutation	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09		104641938	2707602	56	75878										
GOLGA8A	0	genome.wustl.edu	37	chr15	34674048	34674048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	caccatctcctgcagctccaGcagcttcacctgaagggacg	9	16	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	34674048	34674048	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.1553	p.A518V	0.999	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	8	0	0	2	5	71.43	-	-	-	A	34674048	G	A	34674048	3	1	948	1	0	0	0	0	1	0	0	0	6613	971	34	4	356	4	GOLGA8A	15	34674048	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		34674048	67857344	57	75879										
SLTM	0	genome.wustl.edu	37	chr15	59191708	59191708	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cccagtagacgagggcccttTcttcaaagtatccttttctt	7	12	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	59191708	59191708	T	C	SNP	SLTM	ENST00000380516	human	ensembl	69_37n	-1	known	missense	c.1018	p.K340E	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	51	0	0	45	13	22.41	-	-	-	C	59191708	T	C	59191708	3	2	948	1	0	0	0	0	1	0	0	0	14843	1792	62	5	2146	5	SLTM	15	59191708	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	24517660	59191708	43339684	58	75880										
HERC1	0	genome.wustl.edu	37	chr15	63964739	63964739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cccggggactcggatgcaggCactgtttctgtgtcagtgac	14	11	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	63964739	63964739	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	silent	c.8001	p.V2667	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	73	0	0	96	17	15.04	-	-	-	T	63964739	C	T	63964739	2	4	948	1	0	0	0	0	0	0	0	1	7108	697	25	4		4	HERC1	15	63964739	Silent	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	4773031	63964739	38566653	59	75881										
PTPLAD1	0	genome.wustl.edu	37	chr15	65849103	65849103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tacaaactgacccagaggcaGgtaaacattacagtacagaa	8	9	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	65849103	65849103	G	T	SNP	PTPLAD1	ENST00000261875	human	ensembl	69_37n	1	known	missense	c.231	p.Q77H	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_Tyr_Pase-like_PTPLA,pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTPLAD1	HGNC	ENSG00000074696	104	0	0	85	13	13.27	-	-	-	T	65849103	G	T	65849103	3	4	948	1	0	0	0	0	1	0	0	0	12856	991	35	4	245	4	PTPLAD1	15	65849103	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	1884364	65849103	36682289	60	75882										
BLM	0	genome.wustl.edu	37	chr15	91304486	91304486	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtcaattcagaattatactgGtaagtttaaaataaattgaa	6	3	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	15	91304486	91304486	G	T	SNP	BLM	ENST00000355112	human	ensembl	69_37n	1	known	splice_site	c.1882+1	e6+1	1.000	-	-	-	no_errors	BLM	HGNC	ENSG00000197299	18	0	0	31	5	13.89	-	-	-	T	91304486	G	T	91304486	5	4	948	1	0	0	0	0	0	0	1	0	1450	1275	44	4	1905	4	BLM	15	91304486	Splice_Site	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	25455383	91304486	11226906	61	75883										
CHTF18	0	genome.wustl.edu	37	chr16	845727	845727	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgaggaacctgatccagacgCtggtgtccggcatcgcgcca	13	13	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	845727	845727	C	A	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	missense	c.2845	p.L949M	0.692	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	46	0	0	52	21	28.77	-	-	-	A	845727	C	A	845727	3	1	948	1	0	0	0	0	1	0	0	0	3443	796	28	4	2284	4	CHTF18	16	845727	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09		845727	89509026	62	75884										
FLYWCH1	0	genome.wustl.edu	37	chr16	2990083	2990083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cgtgttctcctgaaagccagCagatttatgggtaattgtat	10	7	1	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	2990083	2990083	C	A	SNP	FLYWCH1	ENST00000399667	human	ensembl	69_37n	1	known	missense	c.2248	p.Q750K	0.146	NULL	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	59	0	0	71	9	11.25	-	-	-	A	2990083	C	A	2990083	3	1	948	1	0	0	0	0	1	0	0	0	5993	711	25	4	2124	4	FLYWCH1	16	2990083	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	2144356	2990083	87364670	63	75885										
GPT2	0	genome.wustl.edu	37	chr16	46962906	46962906	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aacttcctggagaagtacgcGtgaggacgcctgagccccag	13	12	0	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	46962906	46962906	G	C	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	1	known	silent	c.1569	p.A523	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	38	0	0	45	20	30.77	-	-	-	C	46962906	G	C	46962906	2	2	948	1	0	0	0	0	0	0	0	1	6789	1132	40	3		3	GPT2	16	46962906	Silent	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	43972823	46962906	43391847	64	75886										
MTSS1L	0	genome.wustl.edu	37	chr16	70713720	70713720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tccttgtccagctggttggcCgccttcttccagtcctcgat	9	15	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	16	70713720	70713720	C	T	SNP	MTSS1L	ENST00000576338	human	ensembl	69_37n	-1	novel	missense	c.116	p.R39Q	0.370	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTSS1L	HGNC	ENSG00000132613	58	0	0	81	17	17.35	-	-	-	T	70713720	C	T	70713720	3	4	948	1	0	0	0	0	1	0	0	0	10035	639	23	1	1936	1	MTSS1L	16	70713720	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	23750814	70713720	19641033	65	75887										
GPS2	0	genome.wustl.edu	37	chr17	7216885	7216885	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccccatccctcctattactcAcctctgagctgctgactagg	6	17	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7216885	7216885	A	G	SNP	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	splice_site	c.634+2	e6+2	1.000	-	-	-	no_errors	GPS2	HGNC	ENSG00000132522	30	0	0	35	4	10.26	-	-	-	G	7216885	A	G	7216885	5	3	948	1	0	0	0	0	0	0	1	0	6784	173	6	5	367	5	GPS2	17	7216885	Splice_Site	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09		7216885	73978325	66	75888										
TP53	0	genome.wustl.edu	37	chr17	7579536	7579536	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtcttcagtgaaccattgttCaatatcgtccggggacagca	10	10	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7579536	7579536	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.151	p.E51*	0.001	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	34	0	0	37	20	35.09	-	-	-	A	7579536	C	A	7579536	4	1	948	1	0	0	0	0	0	1	0	0	16477	835	29	2	1151	2	TP53	17	7579536	Nonsense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	362651	7579536	73615674	67	75889										
ALOX15B	0	genome.wustl.edu	37	chr17	7948280	7948281	+	Frame_Shift_Del	DEL	AG	AG	-													0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	actgatgccatggtggcctcAgtgttgggtcctgggaccag							TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	7948280	7948281	AG	-	DEL	ALOX15B	ENST00000380183	human	ensembl	69_37n	1	known	frame_shift_del	c.810_811	p.L272fs	0.000:0.002	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	162	0	0	197	33	14.04	-	-	-	-	7948281	AG	-	7948280	7	5	948	1	0	1	0	1	0	0	0	0	539	175	7	0	832	0	ALOX15B	17	7948280	Frame_Shift_Del	DEL	AG	TCGA-JL-A3YW-01A-12D-A23C-09	368744	7948280	73246930	68	75890										
MYH1	0	genome.wustl.edu	37	chr17	10408575	10408575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tgggccagcttctcatctcgCatctcctctaggagccccag	9	16	4	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	10408575	10408575	C	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.2340	p.M780I	1.000	smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	65	0	0	59	31	34.44	-	-	-	T	10408575	C	T	10408575	3	4	948	1	0	0	0	0	1	0	0	0	10101	710	25	4	3559	4	MYH1	17	10408575	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	2460295	10408575	70786635	69	75891										
GPR179	0	genome.wustl.edu	37	chr17	36483415	36483415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	acaggtctcagccttggcacTgctgtcagatttatacacac	8	12	2	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	36483415	36483415	T	C	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.6037	p.S2013G	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	55	0	0	57	29	33.72	-	-	-	C	36483415	T	C	36483415	3	2	948	1	0	0	0	0	1	0	0	0	6724	1580	55	5	1070	5	GPR179	17	36483415	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	26074840	36483415	44711795	70	75892										
TOM1L1	0	genome.wustl.edu	37	chr17	53026927	53026927	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tacagccagttagtctacaaAccattgcagcagcaccatca	6	13	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	53026927	53026927	A	G	SNP	TOM1L1	ENST00000575882	human	ensembl	69_37n	1	known	missense	c.1231	p.T411A	0.001	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L1	HGNC	ENSG00000141198	32	0	0	20	9	31.03	-	-	-	G	53026927	A	G	53026927	3	3	948	1	0	0	0	0	1	0	0	0	16447	43	2	5	1281	5	TOM1L1	17	53026927	Missense_Mutation	SNP	A	TCGA-JL-A3YW-01A-12D-A23C-09	16543512	53026927	28168283	71	75893										
SLC9A3R1	0	genome.wustl.edu	37	chr17	72745097	72745097	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	agaagggcaagttgggccagTacatccggctggtggagccc	16	10	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	72745097	72745097	T	C	SNP	SLC9A3R1	ENST00000262613	human	ensembl	69_37n	1	known	missense	c.112	p.Y38H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	pfam_PDZ,pfam_EBP50_C-term,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	-	no_errors	SLC9A3R1	HGNC	ENSG00000109062	16	0	0	12	8	40	-	-	-	C	72745097	T	C	72745097	3	2	948	1	0	0	0	0	1	0	0	0	14803	1638	57	5	114	5	SLC9A3R1	17	72745097	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	19718170	72745097	8450113	72	75894										
SLC38A10	0	genome.wustl.edu	37	chr17	79220047	79220047	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tcccaggttttttcctgtctTgggaaccgccagtaacgtcc	9	13	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	17	79220047	79220047	T	G	SNP	SLC38A10	ENST00000374759	human	ensembl	69_37n	-1	known	missense	c.2669	p.Q890P	0.008	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	410	0	0	200	55	21.57	-	-	-	G	79220047	T	G	79220047	3	3	948	1	0	0	0	0	1	0	0	0	14691	1812	63	5	694	5	SLC38A10	17	79220047	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	6474950	79220047	1975163	73	75895										
CLUL1	0	genome.wustl.edu	37	chr18	596992	596992	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tctgcaggccccgcccacccTgcgtcacctgcaggcccggg	12	20	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	596992	596992	T	G	SNP	CLUL1	ENST00000579912	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLUL1	HGNC	ENSG00000079101	15	0	0	10	4	28.57	-	-	-	G	596992	T	G	596992	1	3	948	0	1	0	0	0	0	0	0	0	3600	1595	55	5		5	CLUL1	18	596992	RNA	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09		596992	77480256	74	75896										
TXNDC2	0	genome.wustl.edu	37	chr18	9887913	9887913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gtggacttctcggccacgtgGtgtgggccctgcaggaccat	15	12	1	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	9887913	9887913	G	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	1	known	missense	c.1437	p.W479C	0.994	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	65	0	0	85	14	14.14	-	-	-	T	9887913	G	T	9887913	3	4	948	1	0	0	0	0	1	0	0	0	16894	1270	44	4	1443	4	TXNDC2	18	9887913	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	9290921	9887913	68189335	75	75897										
TCF4	0	genome.wustl.edu	37	chr18	53017614	53017614	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gatggcaaacctggaggaacTtttcgaactttctttgtctg	10	8	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	18	53017614	53017614	T	G	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.831	p.K277N	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	43	0	0	36	10	21.74	-	-	-	G	53017614	T	G	53017614	3	3	948	1	0	0	0	0	1	0	0	0	15790	1606	56	5	1538	5	TCF4	18	53017614	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	43129701	53017614	25059634	76	75898										
MUC16	0	genome.wustl.edu	37	chr19	9071187	9071187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cattggtcactgcggtgtttGtggaatgatgcatggcggct	15	7	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	9071187	9071187	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16259	p.T5420I	0.001	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	179	0	0	195	39	16.67	-	-	-	A	9071187	G	A	9071187	3	1	948	1	0	0	0	0	1	0	0	0	10045	1377	48	4	27592	4	MUC16	19	9071187	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		9071187	50057796	77	75899										
MUC16	0	genome.wustl.edu	37	chr19	9072753	9072753	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cctgggagatgctggtctccCtcagtttaggagtcagggag	15	9	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	9072753	9072753	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.14693	p.R4898M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	114	0	0	107	38	26.21	-	-	-	A	9072753	C	A	9072753	3	1	948	1	0	0	0	0	1	0	0	0	10045	681	24	4	29158	4	MUC16	19	9072753	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	1566	9072753	50056230	78	75900										
RFXANK	0	genome.wustl.edu	37	chr19	19307824	19307824	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	accaaccggcagcgagggaaCgaggtgtcagctctgccggc	15	13	2	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	19307824	19307824	C	A	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	1	known	missense	c.240	p.N80K	0.209	pirsf_DNA-bd_RFXANK	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	48	0	0	30	17	36.17	-	-	-	A	19307824	C	A	19307824	3	1	948	1	0	0	0	0	1	0	0	0	13352	535	19	3	246	3	RFXANK	19	19307824	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	10235071	19307824	39821159	79	75901										
ARHGAP35	0	genome.wustl.edu	37	chr19	47440520	47440520	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccctttctctttcctggacaGaaaccaaagcccaaaccccg	5	17	1	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	47440520	47440520	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	1	known	splice_site	c.3682-1	e2-1	1.000	-	-	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	66	0	0	76	18	19.15	-	-	-	A	47440520	G	A	47440520	5	1	948	1	0	0	0	0	0	0	1	0	6846	956	33	2	3687	2	ARHGAP35	19	47440520	Splice_Site	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	28132696	47440520	11688463	80	75902										
ZNF610	0	genome.wustl.edu	37	chr19	52857606	52857606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	agtaaaaaatacagatggaaGggaatgtgtcagaagcgtga	13	3	1	3			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	52857606	52857606	G	A	SNP	ZNF610	ENST00000327920	human	ensembl	69_37n	1	known	missense	c.293	p.R98K	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	23	0	0	24	6	20	-	-	-	A	52857606	G	A	52857606	3	1	948	1	0	0	0	0	1	0	0	0	18132	1000	35	4	303	4	ZNF610	19	52857606	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09	5417086	52857606	6271377	81	75903										
ZSCAN1	0	genome.wustl.edu	37	chr19	58565195	58565195	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tcttcctgcacaactccgtcCtcactgagcatggcaagatc	7	15	2	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	19	58565195	58565195	C	A	SNP	ZSCAN1	ENST00000282326	human	ensembl	69_37n	1	known	missense	c.1003	p.L335I	0.416	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	69	0	0	80	15	15.79	-	-	-	A	58565195	C	A	58565195	3	1	948	1	0	0	0	0	1	0	0	0	18319	681	24	4	1017	4	ZSCAN1	19	58565195	Missense_Mutation	SNP	C	TCGA-JL-A3YW-01A-12D-A23C-09	5707589	58565195	563788	82	75904										
C21orf2	0	genome.wustl.edu	37	chr21	45750001	45750001	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	gggccggggctgcggccatgGcagccaccctccagctcccg	15	18	0	0			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	21	45750001	45750001	G	C	SNP	C21orf2	ENST00000470196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C21orf2	HGNC	ENSG00000160226	25	0	0	29	6	17.14	-	-	-	C	45750001	G	C	45750001	1	2	948	0	1	0	0	0	0	0	0	0	2143	1218	42	4		4	C21orf2	21	45750001	RNA	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		45750001	2379894	83	75905										
XRCC6	0	genome.wustl.edu	37	chr22	42032720	42032720	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	aagacaacccccatggcaatGacagtgccaaagccagccgg	10	14	0	2			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	22	42032720	42032720	G	C	SNP	XRCC6	ENST00000359308	human	ensembl	69_37n	1	known	missense	c.535	p.D179H	1.000	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,tigrfam_DNA_helicase_ATP-dep_Ku70	pirsf_DNA_helicase_ATP-dep_Ku70,pfam_Ku_N,pfam_DNA_helicase_ATP-dep_Ku,pfam_Ku_C,pfam_SAP_DNA-bd,superfamily_SPOC-like,smart_DNA_helicase_ATP-dep_Ku,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd,tigrfam_DNA_helicase_ATP-dep_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419	45	0	0	43	18	29.51	-	-	-	C	42032720	G	C	42032720	3	2	948	1	0	0	0	0	1	0	0	0	17554	1290	45	2	549	2	XRCC6	22	42032720	Missense_Mutation	SNP	G	TCGA-JL-A3YW-01A-12D-A23C-09		42032720	9271846	84	75906										
TAF7L	0	genome.wustl.edu	37	chrX	100537337	100537337	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	ccatgcttccagacacatttTtcttctctccccctttcttt	2	16	3	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	100537337	100537337	T	A	SNP	TAF7L	ENST00000372907	human	ensembl	69_37n	-1	known	missense	c.642	p.E214D	0.987	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387	107	0	0	131	19	12.67	-	-	-	A	100537337	T	A	100537337	3	1	948	1	0	0	0	0	1	0	0	0	15625	1838	64	5	782	5	TAF7L	23	100537337	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09		100537337	54733223	85	75907										
KIAA1210	0	genome.wustl.edu	37	chrX	118242398	118242398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	cacaactccaggaaccttacTcctaggtttaggcagagttc	8	12	0	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	118242398	118242398	T	C	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.814	p.S272G	0.001	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	52	0	0	56	14	20	-	-	-	C	118242398	T	C	118242398	3	2	948	1	0	0	0	0	1	0	0	0	8266	1551	54	5	4351	5	KIAA1210	23	118242398	Missense_Mutation	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	17705061	118242398	37028162	86	75908										
PLAC1	0	genome.wustl.edu	37	chrX	133699960	133699960	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0804597701149425	7	0.464887203876026	1.5009009009009	2.04668304668305	1.25075075075075	1	1	0	tcatgaagttgctataggttTctctttctcaaaagtgctca	7	8	4	1			TCGA-JL-A3YW-01A-12D-A23C-09	TCGA-JL-A3YW-10B-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9db7757b-7f31-4a5e-aa19-480a3f63c744	59907891-205d-4fbe-ac2e-98cb412eee76	X	133699960	133699960	T	G	SNP	PLAC1	ENST00000476971	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLAC1	HGNC	ENSG00000170965	30	0	0	30	4	11.76	-	-	-	G	133699960	T	G	133699960	1	3	948	0	1	0	0	0	0	0	0	0	12086	1798	62	5		5	PLAC1	23	133699960	RNA	SNP	T	TCGA-JL-A3YW-01A-12D-A23C-09	15457562	133699960	21570600	87	75909										
CSMD2	0	genome.wustl.edu	37	chr1	34025030	34025030	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	aggttaaactggttaccctgAgtgaggccgttgacagggtt	14	7	0	3			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	34025030	34025030	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.8424	p.T2808	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	44	0	0	26	5	16.13	-	-	-	G	34025030	A	G	34025030	2	3	949	1	0	0	0	0	0	0	0	1	3977	319	11	5		5	CSMD2	1	34025030	Silent	SNP	A	TCGA-JL-A3YX-01A-11D-A22X-09		34025030	215225591	1	75910										
LRRN2	0	genome.wustl.edu	37	chr1	204588367	204588368	+	Frame_Shift_Del	DEL	CC	CC	-													0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ttccagtgcccgcctgggcaCccgggccagctggttgtcat							TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	204588367	204588368	CC	-	DEL	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	frame_shift_del	c.754_753	p.V252fs	0.996:0.013	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	42	0	0	70	15	17.65	-	-	-	-	204588368	CC	-	204588367	7	5	949	1	0	1	0	1	0	0	0	0	9101	507	18	0	1391	0	LRRN2	1	204588367	Frame_Shift_Del	DEL	CC	TCGA-JL-A3YX-01A-11D-A22X-09	170563337	204588367	44662254	2	75911										
URB2	0	genome.wustl.edu	37	chr1	229790001	229790001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ctttgttgtctgtaggaagcAtagatgacctgcctacggtc	11	9	1	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	229790001	229790001	A	G	SNP	URB2	ENST00000258243	human	ensembl	69_37n	1	known	missense	c.4243	p.I1415V	0.000	pfam_Urb2/Npa2_C	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	98	0	0	110	20	15.38	-	-	-	G	229790001	A	G	229790001	3	3	949	1	0	0	0	0	1	0	0	0	17122	217	8	5	4273	5	URB2	1	229790001	Missense_Mutation	SNP	A	TCGA-JL-A3YX-01A-11D-A22X-09	25201634	229790001	19460620	3	75912										
ZFP36L2	0	genome.wustl.edu	37	chr2	43452870	43452870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	cagcatgttgttcaggttgaGgttggccagggatttctctg	14	7	2	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	2	43452870	43452870	G	A	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.73	p.L25F	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	34	0	0	19	6	24	-	-	-	A	43452870	G	A	43452870	3	1	949	1	0	0	0	0	1	0	0	0	17743	1000	35	4	1415	4	ZFP36L2	2	43452870	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		43452870	199746503	4	75913										
RGPD1	0	genome.wustl.edu	37	chr2	87205014	87205014	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	atgggcagaagatcagaattCtttacggaaaatgatttgcc	10	6	2	4			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	2	87205014	87205014	C	G	SNP	RGPD1	ENST00000398193	human	ensembl	69_37n	1	known	missense	c.2423	p.S808C	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD1	HGNC	ENSG00000187627	19	0	0	7	5	41.67	-	-	-	G	87205014	C	G	87205014	3	3	949	1	0	0	0	0	1	0	0	0	13368	913	32	2	2465	2	RGPD1	2	87205014	Missense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	43752144	87205014	155994359	5	75914										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	50	0	0	25	34	57.63	-	-	-	A	178936082	G	A	178936082	3	1	949	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		178936082	19086348	6	75915										
PIK3CA	0	genome.wustl.edu	37	chr3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tcaaacaggagaagaaggatGaaacacaaaaggtgtgtgac	12	5	1	4			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	85	0	0	49	45	47.37	-	-	-	A	178938934	G	A	178938934	3	1	949	1	0	0	0	0	1	0	0	0	11987	1291	45	2	2226	2	PIK3CA	3	178938934	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	2852	178938934	19083496	7	75916										
MAP3K1	0	genome.wustl.edu	37	chr5	56168489	56168490	+	Frame_Shift_Del	DEL	AT	AT	-													0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ggcagaagagtgtagaagaaAtagagaacctttaatatgtc							TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	56168489	56168490	AT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	frame_shift_del	c.1445_1446	p.N482fs	1.000:0.994	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	57	0	0	33	18	35.29	-	-	-	-	56168490	AT	-	56168489	7	5	949	1	0	1	0	1	0	0	0	0	9314	101	4	0	1475	0	MAP3K1	5	56168489	Frame_Shift_Del	DEL	AT	TCGA-JL-A3YX-01A-11D-A22X-09		56168489	124746771	8	75917										
MAP3K1	0	genome.wustl.edu	37	chr5	56181807	56181807	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	atatggagccttcaaagaatCagtagttattaactacactg	7	7	2	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	56181807	56181807	C	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.4031	p.S1344*	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	58	0	0	46	22	32.35	-	-	-	G	56181807	C	G	56181807	4	3	949	1	0	0	0	0	0	1	0	0	9314	838	29	2	4097	2	MAP3K1	5	56181807	Nonsense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	13318	56181807	124733453	9	75918										
OTP	0	genome.wustl.edu	37	chr5	76933023	76933023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	cctacacttcaccgcctcccGgtggcccagaagctcggcgg	11	18	1	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	76933023	76933023	G	A	SNP	OTP	ENST00000306422	human	ensembl	69_37n	-1	known	missense	c.70	p.R24W	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	OTP	HGNC	ENSG00000171540	69	0	0	45	25	35.71	-	-	-	A	76933023	G	A	76933023	3	1	949	1	0	0	0	0	1	0	0	0	11383	1115	39	1	915	1	OTP	5	76933023	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	20751216	76933023	103982237	10	75919										
TMEM161B	0	genome.wustl.edu	37	chr5	87492051	87492051	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tgccacagtcagatactggtGatagaaaagcccaaaaaggc	10	9	1	3			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	87492051	87492051	G	T	SNP	TMEM161B	ENST00000296595	human	ensembl	69_37n	-1	known	missense	c.1441	p.H481N	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180	36	0	0	36	4	10	-	-	-	T	87492051	G	T	87492051	3	4	949	1	0	0	0	0	1	0	0	0	16172	1290	45	2	26	2	TMEM161B	5	87492051	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	10559028	87492051	93423209	11	75920										
C6orf136	0	genome.wustl.edu	37	chr6	30615302	30615302	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	acgtcggtcctcccaggtttGagggcggtcaggcggggtca	17	11	2	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	6	30615302	30615302	G	A	SNP	C6orf136	ENST00000293604	human	ensembl	69_37n	1	known	silent	c.294	p.L98	0.000	NULL	pfam_DUF2358	-	no_errors	C6orf136	HGNC	ENSG00000204564	74	0	0	40	22	35.48	-	-	-	A	30615302	G	A	30615302	2	1	949	1	0	0	0	0	0	0	0	1	2352	1281	45	2		2	C6orf136	6	30615302	Silent	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		30615302	140499765	12	75921										
LATS1	0	genome.wustl.edu	37	chr6	150039148	150039148	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	cggcccgtcccaggggtcgtGaggacctggctctcccctta	13	16	1	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	6	150039148	150039148	G	A	SNP	LATS1	ENST00000458696	human	ensembl	69_37n	-1	putative	missense	c.23	p.S8L	0.955	NULL	superfamily_UBA-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	LATS1	HGNC	ENSG00000131023	9	0	0	7	6	46.15	-	-	-	A	150039148	G	A	150039148	3	1	949	1	0	0	0	0	1	0	0	0	8700	1305	45	2		2	LATS1	6	150039148	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	119423846	150039148	21075919	13	75922										
COL28A1	0	genome.wustl.edu	37	chr7	7561589	7561589	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	acattcacaaatcttgcgttCacactgaatcaataatgaaa	4	9	4	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	7	7561589	7561589	C	A	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	nonsense	c.706	p.E236*	0.997	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	47	0	0	30	19	38	-	-	-	A	7561589	C	A	7561589	4	1	949	1	0	0	0	0	0	1	0	0	3716	835	29	2	2795	2	COL28A1	7	7561589	Nonsense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09		7561589	151577074	14	75923										
MLL5	0	genome.wustl.edu	37	chr7	104654714	104654714	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tcggagaccgtgccggagttCgggagcggcaacagagtggg	19	9	0	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	7	104654714	104654714	C	T	SNP	MLL5	ENST00000480368	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	MLL5	HGNC	ENSG00000005483	109	0	0	58	37	38.95	-	-	-	T	104654714	C	T	104654714	1	4	949	0	1	0	0	0	0	0	0	0	9695	899	31	1		1	MLL5	7	104654714	RNA	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	97093125	104654714	54483949	15	75924										
GAPVD1	0	genome.wustl.edu	37	chr9	128061327	128061327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	agacagctgaaaagttgtatCgtacagcatggattgcgaag	12	6	0	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	9	128061327	128061327	C	T	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	1	known	missense	c.127	p.R43C	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	19	0	0	9	6	40	-	-	-	T	128061327	C	T	128061327	3	4	949	1	0	0	0	0	1	0	0	0	6289	884	31	1	129	1	GAPVD1	9	128061327	Missense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09		128061327	13152104	16	75925										
SLC22A9	0	genome.wustl.edu	37	chr11	63137555	63137555	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tttcaggacctcctgggtcaCgctggtgacctgtggagatt	13	10	2	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	11	63137555	63137555	C	T	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	1	known	silent	c.27	p.H9	0.001	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	85	0	0	42	9	17.65	-	-	-	T	63137555	C	T	63137555	2	4	949	1	0	0	0	0	0	0	0	1	14550	535	19	1		1	SLC22A9	11	63137555	Silent	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09		63137555	71868961	17	75926										
MPHOSPH8	0	genome.wustl.edu	37	chr13	20216401	20216401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	aaagccaaagcagtcaggaaGgatattcaggtactatgttt	10	6	2	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	13	20216401	20216401	G	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	1	known	missense	c.360	p.K120N	0.719	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	39	0	0	13	3	18.75	-	-	-	T	20216401	G	T	20216401	3	4	949	1	0	0	0	0	1	0	0	0	9799	991	35	4	366	4	MPHOSPH8	13	20216401	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		20216401	94953477	18	75927										
ACSBG1	0	genome.wustl.edu	37	chr15	78474920	78474920	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tgatggcgtccagggcttccTcaggcacttcattccccagc	10	15	2	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	15	78474920	78474920	T	C	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	missense	c.782	p.E261G	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	57	0	0	40	26	39.39	-	-	-	C	78474920	T	C	78474920	3	2	949	1	0	0	0	0	1	0	0	0	173	1551	54	5	1424	5	ACSBG1	15	78474920	Missense_Mutation	SNP	T	TCGA-JL-A3YX-01A-11D-A22X-09		78474920	24056472	19	75928										
SOLH	0	genome.wustl.edu	37	chr16	597356	597356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	cgggggcccacgcaggctctCgctgccacggatccctcctg	13	18	1	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	597356	597356	C	T	SNP	SOLH	ENST00000219611	human	ensembl	69_37n	1	known	missense	c.518	p.S173L	0.999	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	SOLH	HGNC	ENSG00000103326	8	0	0	5	5	50	-	-	-	T	597356	C	T	597356	3	4	949	1	0	0	0	0	1	0	0	0	15014	893	31	1	520	1	SOLH	16	597356	Missense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09		597356	89757397	20	75929										
TRAP1	0	genome.wustl.edu	37	chr16	3714413	3714413	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	gagaggctggttagctgcccGgagggcagcgccgaggactc	18	11	0	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	3714413	3714413	G	A	SNP	TRAP1	ENST00000246957	human	ensembl	69_37n	-1	known	silent	c.1431	p.S477	0.120	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602	80	0	0	44	58	56.31	-	-	-	A	3714413	G	A	3714413	2	1	949	1	0	0	0	0	0	0	0	1	16551	1103	39	1		1	TRAP1	16	3714413	Silent	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	3117057	3714413	86640340	21	75930										
SMG1	0	genome.wustl.edu	37	chr16	18879677	18879677	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tagaaaaaagttctaatgacCtttacgataagagaaagaaa	7	4	1	4			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	18879677	18879677	C	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	splice_site	c.3031-1	e22-1	1.000	-	-	-	no_errors	SMG1	HGNC	ENSG00000157106	93	0	0	52	77	59.69	-	-	-	A	18879677	C	A	18879677	5	1	949	1	0	0	0	0	0	0	1	0	14884	695	24	4	8123	4	SMG1	16	18879677	Splice_Site	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	15165264	18879677	71475076	22	75931										
PRSS53	0	genome.wustl.edu	37	chr16	31098175	31098175	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tgagtccctcacgctgcagaGaacccaggaccactgaccag	10	15	1	3			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	31098175	31098175	G	A	SNP	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	missense	c.287	p.S96F	1.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	56	0	0	46	10	17.86	-	-	-	A	31098175	G	A	31098175	3	1	949	1	0	0	0	0	1	0	0	0	12712	942	33	2	1406	2	PRSS53	16	31098175	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	12218498	31098175	59256578	23	75932										
DHX8	0	genome.wustl.edu	37	chr17	41570357	41570357	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tggtgacatttataatggcaAagttaccagcatcatgcagt	9	7	1	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	41570357	41570357	A	T	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	1	known	missense	c.812	p.K271I	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	39	0	0	23	22	48.89	-	-	-	T	41570357	A	T	41570357	3	4	949	1	0	0	0	0	1	0	0	0	4551	14	1	5	834	5	DHX8	17	41570357	Missense_Mutation	SNP	A	TCGA-JL-A3YX-01A-11D-A22X-09		41570357	39624853	24	75933										
TRIM37	0	genome.wustl.edu	37	chr17	57165759	57165759	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tttactagttctcgtagctgGagtggagcactggggagaaa	14	6	1	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	57165759	57165759	G	C	SNP	TRIM37	ENST00000580122	human	ensembl	69_37n	-1	known	missense	c.172	p.P58A	0.623	NULL	pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIM37	HGNC	ENSG00000108395	24	0	0	22	15	40.54	-	-	-	C	57165759	G	C	57165759	3	2	949	1	0	0	0	0	1	0	0	0	16607	1161	41	2	2812	2	TRIM37	17	57165759	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	15595402	57165759	24029451	25	75934										
NUP85	0	genome.wustl.edu	37	chr17	73201834	73201834	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	cattggcgtccgagcgacttCtaggagcctggggttcggcg	16	11	1	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	73201834	73201834	C	T	SNP	NUP85	ENST00000449421	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP85	HGNC	ENSG00000125450	71	0	0	63	49	43.75	-	-	-	T	73201834	C	T	73201834	1	4	949	0	1	0	0	0	0	0	0	0	10843	928	32	2		2	NUP85	17	73201834	RNA	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	16036075	73201834	7993376	26	75935										
CANT1	0	genome.wustl.edu	37	chr17	76989950	76989950	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ctggcgcggcgcggcaggaaGaaccagcgctgcagcgtgtc	17	13	0	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	76989950	76989950	G	T	SNP	CANT1	ENST00000302345	human	ensembl	69_37n	-1	known	missense	c.888	p.F296L	1.000	pfam_Apyrase,superfamily_Apyrase	pfam_Apyrase,superfamily_Apyrase	-	no_errors	CANT1	HGNC	ENSG00000171302	30	0	0	10	14	58.33	-	-	-	T	76989950	G	T	76989950	3	4	949	1	0	0	0	0	1	0	0	0	2642	933	33	2	321	2	CANT1	17	76989950	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	3788116	76989950	4205260	27	75936										
ARHGDIA	0	genome.wustl.edu	37	chr17	79827427	79827427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	agggcactcacccgtcaggtCcagctccagggggcccgggg	16	15	2	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	79827427	79827427	C	T	SNP	ARHGDIA	ENST00000269321	human	ensembl	69_37n	-1	known	missense	c.265	p.D89N	1.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIA	HGNC	ENSG00000141522	22	0	0	8	8	50	-	-	-	T	79827427	C	T	79827427	3	4	949	1	0	0	0	0	1	0	0	0	892	855	30	2	365	2	ARHGDIA	17	79827427	Missense_Mutation	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09	2837477	79827427	1367783	28	75937										
PTPRM	0	genome.wustl.edu	37	chr18	8394540	8394540	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	tgtgagatgctccggcaccaGagaaccgtggatgtctttca	12	10	2	2			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	18	8394540	8394540	G	C	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	1	known	missense	c.4278	p.Q1426H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	37	0	0	25	17	40.48	-	-	-	C	8394540	G	C	8394540	3	2	949	1	0	0	0	0	1	0	0	0	12889	933	33	2	4401	2	PTPRM	18	8394540	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		8394540	69682708	29	75938										
ZSWIM4	0	genome.wustl.edu	37	chr19	13941397	13941397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ccctggcgcagctcagcatcGccttcaaccaggacagccac	9	18	2	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	19	13941397	13941397	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	1	known	missense	c.2503	p.A835T	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	85	0	0	97	11	10.19	-	-	-	A	13941397	G	A	13941397	3	1	949	1	0	0	0	0	1	0	0	0	18334	1087	38	1	2553	1	ZSWIM4	19	13941397	Missense_Mutation	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09		13941397	45187586	30	75939										
ACTN4	0	genome.wustl.edu	37	chr19	39220426	39220426	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	caggtctcttcctttgctctGaggtcccttcaaggcctccc	8	16	3	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	19	39220426	39220426	G	A	SNP	ACTN4	ENST00000497637	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.086	-	-	-	no_errors	ACTN4	HGNC	ENSG00000130402	41	0	0	21	15	41.67	-	-	-	A	39220426	G	A	39220426	1	1	949	0	1	0	0	0	0	0	0	0	207	1305	45	2		2	ACTN4	19	39220426	RNA	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	25279029	39220426	19908557	31	75940										
KRTAP20-2	0	genome.wustl.edu	37	chr21	32007597	32007597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	gaaaccatgtgctactacagCaactactatggtggtctgcg	10	10	1	0			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	21	32007597	32007597	C	T	SNP	KRTAP20-2	ENST00000330798	human	ensembl	69_37n	1	known	silent	c.15	p.S5	0.035	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP20-2	HGNC	ENSG00000184032	144	0	0	113	36	24.16	-	-	-	T	32007597	C	T	32007597	2	4	949	1	0	0	0	0	0	0	0	1	8590	709	25	4		4	KRTAP20-2	21	32007597	Silent	SNP	C	TCGA-JL-A3YX-01A-11D-A22X-09		32007597	16122298	32	75941										
KDM5C	0	genome.wustl.edu	37	chrX	53223508	53223509	+	Frame_Shift_Del	DEL	CT	CT	-													0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ggccttgccagctgatggccCtctctgtgaggcactgcagg							TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	53223508	53223509	CT	-	DEL	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	frame_shift_del	c.3851_3850	p.R1284fs	1.000:1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	99	0	0	72	31	30.1	-	-	-	-	53223509	CT	-	53223508	7	5	949	1	0	1	0	1	0	0	0	0	8188	681	24	0	945	0	KDM5C	23	53223508	Frame_Shift_Del	DEL	CT	TCGA-JL-A3YX-01A-11D-A22X-09		53223508	102047052	33	75942										
SMC1A	0	genome.wustl.edu	37	chrX	53439044	53439046	+	In_Frame_Del	DEL	CTT	CTT	-													0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ttctccactgacagcatctcCttctccagctcatccatgtc							TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	53439044	53439046	CTT	-	DEL	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	in_frame_del	c.1014_1012	p.K338in_frame_del	0.999:1.000:0.999	pfam_RecF/RecN/SMC,prints_Tropomyosin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	85	0	0	64	24	27.27	-	-	-	-	53439046	CTT	-	53439044	7	5	949	1	0	1	0	1	0	0	0	0	14870	680	24	0	2767	0	SMC1A	23	53439044	In_Frame_Del	DEL	CTT	TCGA-JL-A3YX-01A-11D-A22X-09	215536	53439044	101831516	34	75943										
KIAA2022	0	genome.wustl.edu	37	chrX	73961059	73961059	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	gtactgcagtcccacttgatTttttccacactgtccaatgg	7	12	0	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	73961059	73961059	T	A	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3333	p.K1111N	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	84	0	0	49	26	34.67	-	-	-	A	73961059	T	A	73961059	3	1	949	1	0	0	0	0	1	0	0	0	8321	1838	64	5	1225	5	KIAA2022	23	73961059	Missense_Mutation	SNP	T	TCGA-JL-A3YX-01A-11D-A22X-09	20522015	73961059	81309501	35	75944										
BRWD3	0	genome.wustl.edu	37	chrX	79947371	79947371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.277777777777778	10	0.0023461385202001	3.39234449760766	5.59736842105263	2.90233918128655	0.226194642616772	0.83155060263902	7	ataacccgttcacattcttcGtctctggaatgagcccccca	6	15	3	1			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	79947371	79947371	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.3432	p.D1144	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	72	0	0	48	19	28.36	-	-	-	A	79947371	G	A	79947371	2	1	949	1	0	0	0	0	0	0	0	1	1534	1136	40	1		1	BRWD3	23	79947371	Silent	SNP	G	TCGA-JL-A3YX-01A-11D-A22X-09	5986312	79947371	75323189	36	75945										
IFI16	0	genome.wustl.edu	37	chr1	158984516	158984516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	ttctactaaaaggattagagGtcatcaatgattatcatttt	6	5	4	2			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	1	158984516	158984516	G	T	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	1	known	missense	c.46	p.V16F	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	39	0	0	39	5	11.36	-	-	-	T	158984516	G	T	158984516	3	4	950	1	0	0	0	0	1	0	0	0	7565	1261	44	4	48	4	IFI16	1	158984516	Missense_Mutation	SNP	G	TCGA-LL-A440-01A-11D-A243-09		158984516	90266105	1	75946										
GALNT3	0	genome.wustl.edu	37	chr2	166621457	166621457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	tattgcaggtgaagaatagaGcacactgtggacagttctaa	11	6	1	3			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	2	166621457	166621457	G	T	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	missense	c.625	p.L209I	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	24	0	0	14	3	17.65	-	-	-	T	166621457	G	T	166621457	3	4	950	1	0	0	0	0	1	0	0	0	6264	971	34	4	1312	4	GALNT3	2	166621457	Missense_Mutation	SNP	G	TCGA-LL-A440-01A-11D-A243-09		166621457	76577916	2	75947										
TRIM2	0	genome.wustl.edu	37	chr4	154191552	154191552	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	tctaggatggccagtgaaggCaccaacatcccaagtcctgt	10	12	1	1			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	4	154191552	154191552	C	A	SNP	TRIM2	ENST00000338700	human	ensembl	69_37n	1	known	silent	c.96	p.G32	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654	49	0	0	38	13	25.49	-	-	-	A	154191552	C	A	154191552	2	1	950	1	0	0	0	0	0	0	0	1	16590	697	25	4		4	TRIM2	4	154191552	Silent	SNP	C	TCGA-LL-A440-01A-11D-A243-09		154191552	36962724	3	75948										
BICD2	0	genome.wustl.edu	37	chr9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	cgcgcagccactccggctgcGcctccatcaccagccgcgcg	11	21	1	0			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	9	95526977	95526977	G	T	SNP	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	missense	c.50	p.A17E	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	25	0	0	12	10	41.67	-	-	-	T	95526977	G	T	95526977	3	4	950	1	0	0	0	0	1	0	0	0	1434	1087	38	3	2555	3	BICD2	9	95526977	Missense_Mutation	SNP	G	TCGA-LL-A440-01A-11D-A243-09		95526977	45686454	4	75949										
ZNF668	0	genome.wustl.edu	37	chr16	31075646	31075646	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	tcttcagagcagtctgccggCccatgtgtggcagcgtggcg	15	12	3	1			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	16	31075646	31075646	C	A	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	silent	c.204	p.G68	0.047	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	25	0	0	16	10	38.46	-	-	-	A	31075646	C	A	31075646	2	1	950	1	0	0	0	0	0	0	0	1	18171	726	26	4		4	ZNF668	16	31075646	Silent	SNP	C	TCGA-LL-A440-01A-11D-A243-09		31075646	59279107	5	75950										
SRCIN1	0	genome.wustl.edu	37	chr17	36701522	36701522	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	cccccactacccctggtgggGactgtgggccatcccagccc	11	19	0	0			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	17	36701522	36701522	G	T	SNP	SRCIN1	ENST00000584491	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRCIN1	HGNC	ENSG00000017373	35	0	0	38	7	15.56	-	-	-	T	36701522	G	T	36701522	1	4	950	0	1	0	0	0	0	0	0	0	15227	1189	41	2		2	SRCIN1	17	36701522	RNA	SNP	G	TCGA-LL-A440-01A-11D-A243-09		36701522	44493688	6	75951										
SF3A2	0	genome.wustl.edu	37	chr19	2245452	2245452	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	atcctgtccgcagggcccggCgagcagccaaggaggccaag	15	14	0	0			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	19	2245452	2245452	C	A	SNP	SF3A2	ENST00000221494	human	ensembl	69_37n	1	known	silent	c.253	p.R85	0.986	smart_Znf_U1	smart_Znf_U1,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A2	HGNC	ENSG00000104897	47	0	0	34	17	33.33	-	-	-	A	2245452	C	A	2245452	2	1	950	1	0	0	0	0	0	0	0	1	14235	760	27	3		3	SF3A2	19	2245452	Silent	SNP	C	TCGA-LL-A440-01A-11D-A243-09		2245452	56883531	7	75952										
CHEK2	0	genome.wustl.edu	37	chr22	29120886	29120886	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.125	1	0.317966057611028	9.52631578947368	NA	9.52631578947368	1	1	0	ttactcacttaaaccatattCtgtaaggacaggacaaattt	5	8	2	0			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	22	29120886	29120886	C	T	SNP	CHEK2	ENST00000448511	human	ensembl	69_37n	-1	known	missense	c.470	p.R157K	0.000	NULL	superfamily_SMAD_FHA_domain	-	no_errors	CHEK2	HGNC	ENSG00000183765	27	0	0	27	4	12.9	-	-	-	T	29120886	C	T	29120886	3	4	950	1	0	0	0	0	1	0	0	0	3364	928	32	2		2	CHEK2	22	29120886	Missense_Mutation	SNP	C	TCGA-LL-A440-01A-11D-A243-09		29120886	22183680	8	75953										
CCDC27	0	genome.wustl.edu	37	chr1	3670688	3670688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ccccgctctgccagagtgaaCccaaggatgccgccagcctc	10	18	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	3670688	3670688	C	A	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	1	known	missense	c.325	p.P109T	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	37	0	0	18	4	18.18	-	-	-	A	3670688	C	A	3670688	3	1	951	1	0	0	0	0	1	0	0	0	2827	507	18	4	331	4	CCDC27	1	3670688	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		3670688	245579933	1	75954										
SLC2A7	0	genome.wustl.edu	37	chr1	9074793	9074793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gagcacgatgatggagaggaGctgccagcgcagggaccgca	17	10	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	9074793	9074793	G	T	SNP	SLC2A7	ENST00000400906	human	ensembl	69_37n	-1	known	missense	c.850	p.L284I	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241	34	0	0	32	6	15.79	-	-	-	T	9074793	G	T	9074793	3	4	951	1	0	0	0	0	1	0	0	0	14639	971	34	4	712	4	SLC2A7	1	9074793	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	5404105	9074793	240175828	2	75955										
CLCNKA	0	genome.wustl.edu	37	chr1	16360382	16360382	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ccttgggcagagctgagtgtGagaagatggaaaaccagtat	14	6	0	4			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	16360382	16360382	G	T	SNP	CLCNKA	ENST00000464764	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLCNKA	HGNC	ENSG00000186510	58	0	0	24	4	14.29	-	-	-	T	16360382	G	T	16360382	1	4	951	0	1	0	0	0	0	0	0	0	3499	1305	45	2		2	CLCNKA	1	16360382	RNA	SNP	G	TCGA-LL-A441-01A-11D-A243-09	7285589	16360382	232890239	3	75956										
WDR63	0	genome.wustl.edu	37	chr1	85564233	85564233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cctatgtttctccttgaaccGgagagtaataaagaagcaat	8	8	1	3			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	85564233	85564233	G	A	SNP	WDR63	ENST00000294664	human	ensembl	69_37n	1	known	silent	c.1371	p.P457	0.794	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643	42	0	0	35	5	12.5	-	-	-	A	85564233	G	A	85564233	2	1	951	1	0	0	0	0	0	0	0	1	17411	1103	39	1		1	WDR63	1	85564233	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	69203851	85564233	163686388	4	75957										
NBPF9	0	genome.wustl.edu	37	chr1	144822695	144822695	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctactgtgtagaaccaagttAcattttgactcaagagctgg	9	8	1	3			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	144822695	144822695	A	T	SNP	NBPF9	ENST00000473761	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NBPF9	HGNC	ENSG00000168614	8	0	0	9	10	52.63	-	-	-	T	144822695	A	T	144822695	1	4	951	0	1	0	0	0	0	0	0	0	10271	406	14	5		5	NBPF9	1	144822695	RNA	SNP	A	TCGA-LL-A441-01A-11D-A243-09	59258462	144822695	104427926	5	75958										
INTS3	0	genome.wustl.edu	37	chr1	153746474	153746474	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ttgagtctgtttttttttttGtttttttttgtttttttttt	5	1	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	153746474	153746474	G	T	SNP	INTS3	ENST00000476843	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624	24	0	0	17	6	26.09	-	-	-	T	153746474	G	T	153746474	1	4	951	0	1	0	0	0	0	0	0	0	7833	1392	48	4		4	INTS3	1	153746474	RNA	SNP	G	TCGA-LL-A441-01A-11D-A243-09	8923779	153746474	95504147	6	75959										
IQGAP3	0	genome.wustl.edu	37	chr1	156533415	156533415	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctgaaggcaggcagctggagGccatatttggccagttcgga	15	9	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	156533415	156533415	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	69_37n	-1	known	silent	c.549	p.G183	1.000	superfamily_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856	29	0	0	35	7	16.67	-	-	-	A	156533415	G	A	156533415	2	1	951	1	0	0	0	0	0	0	0	1	7870	1190	42	4		4	IQGAP3	1	156533415	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	2786941	156533415	92717206	7	75960										
SPTA1	0	genome.wustl.edu	37	chr1	158650472	158650472	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aatttcttatgcagaacttcGgtgcgctcccagtcttcacc	7	13	3	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	158650472	158650472	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.579	p.T193	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	37	0	0	48	11	18.64	-	-	-	A	158650472	G	A	158650472	2	1	951	1	0	0	0	0	0	0	0	1	15207	1103	39	1		1	SPTA1	1	158650472	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	2117057	158650472	90600149	8	75961										
NPL	0	genome.wustl.edu	37	chr1	182775362	182775362	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gagtgggtgacaaaagggaaGgacaagtgagtggctgcatg	18	4	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	182775362	182775362	G	C	SNP	NPL	ENST00000258317	human	ensembl	69_37n	1	known	missense	c.225	p.K75N	0.989	pfam_Dihydrodipicolinate_synth-like	pfam_Dihydrodipicolinate_synth-like,prints_Dihydrodipicolinate_synth-like	-	no_errors	NPL	HGNC	ENSG00000135838	44	0	0	38	5	11.63	-	-	-	C	182775362	G	C	182775362	3	2	951	1	0	0	0	0	1	0	0	0	10658	991	35	4	235	4	NPL	1	182775362	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	24124890	182775362	66475259	9	75962										
PIK3C2B	0	genome.wustl.edu	37	chr1	204423860	204423860	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gagctcttcgggtctgcaggGggctgcacagctccttgccg	15	13	2	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	204423860	204423860	G	C	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.2003	p.P668R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	14	0	0	18	4	18.18	-	-	-	C	204423860	G	C	204423860	3	2	951	1	0	0	0	0	1	0	0	0	11984	1232	43	4	2989	4	PIK3C2B	1	204423860	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	21648498	204423860	44826761	10	75963										
DISC1	0	genome.wustl.edu	37	chr1	232144818	232144818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctgtccttttcacatggcctCcagaggggacccttattcta	8	13	2	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	1	232144818	232144818	C	T	SNP	DISC1	ENST00000422590	human	ensembl	69_37n	1	known	missense	c.538	p.P180S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DISC1	HGNC	ENSG00000162946	24	0	0	17	6	26.09	-	-	-	T	232144818	C	T	232144818	3	4	951	1	0	0	0	0	1	0	0	0	4574	855	30	2	3108	2	DISC1	1	232144818	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	27720958	232144818	17105803	11	75964										
KIDINS220	0	genome.wustl.edu	37	chr2	8888079	8888079	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tggacgtgagatgagatgttGggagccgccagggtaatacc	16	7	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	2	8888079	8888079	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	nonsense	c.3466	p.Q1156*	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	74	0	0	44	9	16.98	-	-	-	A	8888079	G	A	8888079	4	1	951	1	0	0	0	0	0	1	0	0	8323	1357	47	4	1873	4	KIDINS220	2	8888079	Nonsense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09		8888079	234311294	12	75965										
SLC25A12	0	genome.wustl.edu	37	chr2	172644449	172644449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aggggtcaccagagatgcagCtgggacacctttcaggagaa	14	9	2	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	2	172644449	172644449	C	G	SNP	SLC25A12	ENST00000422440	human	ensembl	69_37n	-1	known	missense	c.1594	p.A532P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840	34	0	0	23	6	20.69	-	-	-	G	172644449	C	G	172644449	3	3	951	1	0	0	0	0	1	0	0	0	14563	797	28	4	454	4	SLC25A12	2	172644449	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	163756370	172644449	70554924	13	75966										
CHRNA1	0	genome.wustl.edu	37	chr2	175618413	175618413	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gcttccagccccgggactccTtgatcacccactccccgctc	7	21	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	2	175618413	175618413	T	A	SNP	CHRNA1	ENST00000261007	human	ensembl	69_37n	-1	known	missense	c.671	p.K224M	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	25	0	0	13	6	31.58	-	-	-	A	175618413	T	A	175618413	3	1	951	1	0	0	0	0	1	0	0	0	3410	1609	56	5	793	5	CHRNA1	2	175618413	Missense_Mutation	SNP	T	TCGA-LL-A441-01A-11D-A243-09	2973964	175618413	67580960	14	75967										
ACAA1	0	genome.wustl.edu	37	chr3	38167948	38167948	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	caggttcccagagtacagcaCccagcatggccatggcctgc	11	15	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	38167948	38167948	C	G	SNP	ACAA1	ENST00000480865	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	ACAA1	HGNC	ENSG00000060971	51	0	0	34	8	19.05	-	-	-	G	38167948	C	G	38167948	1	3	951	0	1	0	0	0	0	0	0	0	104	522	18	4		4	ACAA1	3	38167948	RNA	SNP	C	TCGA-LL-A441-01A-11D-A243-09		38167948	159854482	15	75968										
RBM6	0	genome.wustl.edu	37	chr3	50005866	50005866	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cagaagggagaatttgagcaTtcagaaacaagagaaggaga	13	4	1	6			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	50005866	50005866	T	C	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	1	known	silent	c.1008	p.H336	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	21	0	0	19	6	24	-	-	-	C	50005866	T	C	50005866	2	2	951	1	0	0	0	0	0	0	0	1	13227	1490	52	5		5	RBM6	3	50005866	Silent	SNP	T	TCGA-LL-A441-01A-11D-A243-09	11837918	50005866	148016564	16	75969										
RBM15B	0	genome.wustl.edu	37	chr3	51430822	51430824	+	In_Frame_Del	DEL	CCA	CCA	-													0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	catggggctgaggaacggggCcaccaccaccaccaccacga							TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	51430822	51430824	CCA	-	DEL	RBM15B	ENST00000323686	human	ensembl	69_37n	1	novel	in_frame_del	c.1992_1994	p.H668in_frame_del	1.000:1.000:0.998	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837	16	0	0	3	2	40	-	-	-	-	51430824	CCA	-	51430822	7	5	951	1	0	1	0	1	0	0	0	0	13200	726	26	0	1994	0	RBM15B	3	51430822	In_Frame_Del	DEL	CCA	TCGA-LL-A441-01A-11D-A243-09	1424956	51430822	146591608	17	75970										
MITF	0	genome.wustl.edu	37	chr3	69987024	69987024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	accacatacagcaagcccaaCggcagcaggtaaagcagtac	9	13	0	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	69987024	69987024	C	T	SNP	MITF	ENST00000448226	human	ensembl	69_37n	1	known	missense	c.406	p.R136W	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MITF	HGNC	ENSG00000187098	33	0	0	14	7	33.33	-	-	-	T	69987024	C	T	69987024	3	4	951	1	0	0	0	0	1	0	0	0	9667	527	19	1	618	1	MITF	3	69987024	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	18556202	69987024	128035406	18	75971										
CADM2	0	genome.wustl.edu	37	chr3	86010693	86010693	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aatggttgtgagtggtagggAgctaaacattcttttcctga	12	5	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	86010693	86010693	A	T	SNP	CADM2	ENST00000405615	human	ensembl	69_37n	1	known	missense	c.845	p.E282V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM2	HGNC	ENSG00000175161	48	0	0	34	6	15	-	-	-	T	86010693	A	T	86010693	3	4	951	1	0	0	0	0	1	0	0	0	2592	304	11	5	936	5	CADM2	3	86010693	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09	16023669	86010693	112011737	19	75972										
GPR149	0	genome.wustl.edu	37	chr3	154146676	154146676	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gaaaccactctccccgcagtAggaggggtcccaggaattga	12	12	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	154146676	154146676	A	G	SNP	GPR149	ENST00000389740	human	ensembl	69_37n	-1	known	silent	c.729	p.P243	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR149	HGNC	ENSG00000174948	43	0	0	26	7	21.21	-	-	-	G	154146676	A	G	154146676	2	3	951	1	0	0	0	0	0	0	0	1	6704	407	15	5		5	GPR149	3	154146676	Silent	SNP	A	TCGA-LL-A441-01A-11D-A243-09	68135983	154146676	43875754	20	75973										
MUC4	0	genome.wustl.edu	37	chr3	195509322	195509322	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gatgctgaggaagtgtcggtGacaggaagcggggtggcgtg	21	5	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	3	195509322	195509322	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.9129	p.V3043	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	36	0	0	22	9	29.03	-	-	-	A	195509322	G	A	195509322	2	1	951	1	0	0	0	0	0	0	0	1	10050	1277	45	2		2	MUC4	3	195509322	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	41362646	195509322	2513108	21	75974										
EVC2	0	genome.wustl.edu	37	chr4	5642369	5642369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	caatgccaccatcttccgatCgtactcctcttgtatttcat	4	14	3	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	4	5642369	5642369	C	T	SNP	EVC2	ENST00000344408	human	ensembl	69_37n	-1	known	missense	c.1342	p.D448N	0.837	pfam_EVC2-like	pfam_EVC2-like	-	no_errors	EVC2	HGNC	ENSG00000173040	68	0	0	49	7	12.5	-	-	-	T	5642369	C	T	5642369	3	4	951	1	0	0	0	0	1	0	0	0	5323	884	31	1	2636	1	EVC2	4	5642369	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		5642369	185511907	22	75975										
DHX15	0	genome.wustl.edu	37	chr4	24541821	24541821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tgcgagctgtggatctagagGaaactctgccatcatggatc	12	9	3	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	4	24541821	24541821	G	T	SNP	DHX15	ENST00000336812	human	ensembl	69_37n	-1	known	missense	c.1696	p.P566T	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606	27	0	0	25	4	13.79	-	-	-	T	24541821	G	T	24541821	3	4	951	1	0	0	0	0	1	0	0	0	4537	1174	41	2	711	2	DHX15	4	24541821	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	18899452	24541821	166612455	23	75976										
CFI	0	genome.wustl.edu	37	chr4	110685842	110685842	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tgcttcaaggaaacactaaaCtttcctaaaataaaaaaaca	3	8	1	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	4	110685842	110685842	C	G	SNP	CFI	ENST00000394634	human	ensembl	69_37n	-1	known	missense	c.333	p.K111N	0.159	superfamily_Srcr_rcpt-rel	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pfscan_LDrepeatLR_classA_rpt,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFI	HGNC	ENSG00000205403	26	0	0	29	4	12.12	-	-	-	G	110685842	C	G	110685842	3	3	951	1	0	0	0	0	1	0	0	0	3318	564	20	4	1462	4	CFI	4	110685842	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	86144021	110685842	80468434	24	75977										
FAT4	0	genome.wustl.edu	37	chr4	126411541	126411541	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tcttggccctcctggtccttAgcctgatcctgtgtaaccag	9	14	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	4	126411541	126411541	A	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.13564	p.S4522C	0.941	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	55	0	0	36	5	12.2	-	-	-	T	126411541	A	T	126411541	3	4	951	1	0	0	0	0	1	0	0	0	5738	420	15	5	13630	5	FAT4	4	126411541	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09	15725699	126411541	64742735	25	75978										
TRIM2	0	genome.wustl.edu	37	chr4	154178844	154178844	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cgttgttcttttggattgccGcgtagctgcagcgacagact	12	10	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	4	154178844	154178844	G	A	SNP	TRIM2	ENST00000502281	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIM2	HGNC	ENSG00000109654	32	0	0	22	6	21.43	-	-	-	A	154178844	G	A	154178844	1	1	951	0	1	0	0	0	0	0	0	0	16590	1102	38	1		1	TRIM2	4	154178844	RNA	SNP	G	TCGA-LL-A441-01A-11D-A243-09	27767303	154178844	36975432	26	75979										
GABBR1	0	genome.wustl.edu	37	chr6	29599375	29599375	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggcgggtgtatgatctggcaAcctaaggggtgagtcgggga	19	6	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	6	29599375	29599375	A	T	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	silent	c.87	p.G29	1.000	superfamily_Complement_control_module	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	56	0	0	38	8	17.02	-	-	-	T	29599375	A	T	29599375	2	4	951	1	0	0	0	0	0	0	0	1	6204	57	2	5		5	GABBR1	6	29599375	Silent	SNP	A	TCGA-LL-A441-01A-11D-A243-09		29599375	141515692	27	75980										
GPR31	0	genome.wustl.edu	37	chr6	167570781	167570781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	caaactgaaggcaggagagtGcttcctgccagatgatgctg	13	9	0	4			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	6	167570781	167570781	G	C	SNP	GPR31	ENST00000366834	human	ensembl	69_37n	-1	known	missense	c.539	p.A180G	0.002	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR31	HGNC	ENSG00000120436	36	0	0	21	7	25	-	-	-	C	167570781	G	C	167570781	3	2	951	1	0	0	0	0	1	0	0	0	6737	1319	46	4	423	4	GPR31	6	167570781	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	137971406	167570781	3544286	28	75981										
INTS1	0	genome.wustl.edu	37	chr7	1522191	1522191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctggaccgtaccggcgtccaCcaggcggagcacctcagaac	12	16	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	1522191	1522191	C	G	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.4180	p.V1394L	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	36	0	0	31	4	11.43	-	-	-	G	1522191	C	G	1522191	3	3	951	1	0	0	0	0	1	0	0	0	7829	507	18	4	2966	4	INTS1	7	1522191	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		1522191	157616472	29	75982										
ICA1	0	genome.wustl.edu	37	chr7	8196529	8196529	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tcgcgcttttggattgcagtAgattctcattgtattgaatc	9	7	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	8196529	8196529	A	T	SNP	ICA1	ENST00000407906	human	ensembl	69_37n	-1	putative	missense	c.1021	p.Y341N	0.003	NULL	pfam_Arfaptin_homology_dom,pfscan_Arfaptin_homology_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	39	0	0	33	4	10.81	-	-	-	T	8196529	A	T	8196529	3	4	951	1	0	0	0	0	1	0	0	0	7531	435	15	5		5	ICA1	7	8196529	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09	6674338	8196529	150942134	30	75983										
PKD1L1	0	genome.wustl.edu	37	chr7	47944109	47944109	+	Frame_Shift_Del	DEL	G	G	-													0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gcatttaccagagctgaggaGggggacgtgagccgattggc							TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	47944109	47944109	G	-	DEL	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	frame_shift_del	c.1797	p.S600fs	0.000	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	23	0	0	9	3	25	-	-	-	-	47944109	G	-	47944109	7	5	951	1	0	1	0	1	0	0	0	0	12038	987	35	0	6936	0	PKD1L1	7	47944109	Frame_Shift_Del	DEL	G	TCGA-LL-A441-01A-11D-A243-09	39747580	47944109	111194554	31	75984										
PSPH	0	genome.wustl.edu	37	chr7	56088780	56088780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ccctacatttctgacaccgcGtcctcaacgccacagatttt	5	16	2	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	56088780	56088780	G	A	SNP	PSPH	ENST00000275605	human	ensembl	69_37n	-1	known	silent	c.126	p.D42	0.854	pfam_Dehalogen-like_hydro,pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,tigrfam_SerB,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Dehalogen-like_hydro,pfam_Pyrimidine_nucleotidase_eu,pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,tigrfam_SerB,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PSPH	HGNC	ENSG00000146733	26	0	0	27	8	22.86	-	-	-	A	56088780	G	A	56088780	2	1	951	1	0	0	0	0	0	0	0	1	12797	1136	40	1		1	PSPH	7	56088780	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	8144671	56088780	103049883	32	75985										
PILRB	0	genome.wustl.edu	37	chr7	99954396	99954396	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggcttcctcaggatctcgaaCctgcggaaggaggaccagtc	13	12	2	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	99954396	99954396	C	A	SNP	PILRB	ENST00000448382	human	ensembl	69_37n	1	known	missense	c.173	p.T58N	0.001	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716	27	0	0	24	7	22.58	-	-	-	A	99954396	C	A	99954396	3	1	951	1	0	0	0	0	1	0	0	0	12000	522	18	4		4	PILRB	7	99954396	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	43865616	99954396	59184267	33	75986										
TAS2R39	0	genome.wustl.edu	37	chr7	142881277	142881277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ccaacgaccccagcatggagGctcacatgggggccatcaaa	11	14	2	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	142881277	142881277	G	C	SNP	TAS2R39	ENST00000446620	human	ensembl	69_37n	1	known	missense	c.766	p.A256P	1.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R39	HGNC	ENSG00000236398	34	0	0	39	5	11.36	-	-	-	C	142881277	G	C	142881277	3	2	951	1	0	0	0	0	1	0	0	0	15668	1203	42	4	768	4	TAS2R39	7	142881277	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	42926881	142881277	16257386	34	75987										
REPIN1	0	genome.wustl.edu	37	chr7	150069827	150069827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggcaaagccttcagccagaaGtccaacctggtgtcgcaccg	11	14	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	7	150069827	150069827	G	T	SNP	REPIN1	ENST00000489432	human	ensembl	69_37n	1	known	missense	c.1668	p.K556N	0.921	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022	22	0	0	12	4	25	-	-	-	T	150069827	G	T	150069827	3	4	951	1	0	0	0	0	1	0	0	0	13310	1020	36	4	1674	4	REPIN1	7	150069827	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	7188550	150069827	9068836	35	75988										
LRP12	0	genome.wustl.edu	37	chr8	105511557	105511557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aaacacacctgaaaaatatgCcagtctgaaaccctttctag	5	11	2	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	8	105511557	105511557	C	T	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.406	p.A136T	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	35	0	0	24	4	13.79	-	-	-	T	105511557	C	T	105511557	3	4	951	1	0	0	0	0	1	0	0	0	9020	739	26	4	2132	4	LRP12	8	105511557	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		105511557	40852465	36	75989										
C9orf131	0	genome.wustl.edu	37	chr9	35045133	35045133	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	accacagcagatttatccccCcaatccatgcccccactctt	3	19	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	9	35045133	35045133	C	A	SNP	C9orf131	ENST00000312292	human	ensembl	69_37n	1	known	missense	c.2507	p.P836H	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	35	0	0	24	4	14.29	-	-	-	A	35045133	C	A	35045133	3	1	951	1	0	0	0	0	1	0	0	0	2482	623	22	4	2529	4	C9orf131	9	35045133	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		35045133	106168298	37	75990										
OR1L4	0	genome.wustl.edu	37	chr9	125486411	125486411	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggggaatgtgctcatcatccTggccatctactctgacccca	9	14	4	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	9	125486411	125486411	T	C	SNP	OR1L4	ENST00000259466	human	ensembl	69_37n	1	known	missense	c.143	p.L48P	0.997	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1L4	HGNC	ENSG00000136939	61	0	0	29	4	12.12	-	-	-	C	125486411	T	C	125486411	3	2	951	1	0	0	0	0	1	0	0	0	11038	1580	55	5	145	5	OR1L4	9	125486411	Missense_Mutation	SNP	T	TCGA-LL-A441-01A-11D-A243-09	90441278	125486411	15727020	38	75991										
DIP2C	0	genome.wustl.edu	37	chr10	486824	486824	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cccttacctggaggggtgtaGgcgtccatcgaggtctgcac	14	12	1	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	10	486824	486824	G	T	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.381	p.A127	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	26	0	0	23	7	23.33	-	-	-	T	486824	G	T	486824	2	4	951	1	0	0	0	0	0	0	0	1	4565	987	35	4		4	DIP2C	10	486824	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09		486824	135047923	39	75992										
FBXO18	0	genome.wustl.edu	37	chr10	5945078	5945081	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	agcccttcggtcaaagatggAcaaacagagatccgaaccat							TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	10	5945078	5945081	ACAA	-	DEL	FBXO18	ENST00000379999	human	ensembl	69_37n	1	known	frame_shift_del	c.250_253	p.N85fs	1.000:1.000:0.999:1.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	51	0	0	57	9	13.64	-	-	-	-	5945081	ACAA	-	5945078	7	5	951	1	0	1	0	1	0	0	0	0	5777	275	10	0	265	0	FBXO18	10	5945078	Frame_Shift_Del	DEL	ACAA	TCGA-LL-A441-01A-11D-A243-09	5458254	5945078	129589669	40	75993										
FAM107B	0	genome.wustl.edu	37	chr10	14563237	14563237	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tggcctgttctcctgagattGcctttcaccttcacaaactc	6	14	3	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	10	14563237	14563237	G	A	SNP	FAM107B	ENST00000181796	human	ensembl	69_37n	-1	known	silent	c.873	p.G291	1.000	pfam_DUF1151	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809	60	0	0	42	12	22.22	-	-	-	A	14563237	G	A	14563237	2	1	951	1	0	0	0	0	0	0	0	1	5430	1306	46	4		4	FAM107B	10	14563237	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	8618159	14563237	120971510	41	75994										
SGMS1	0	genome.wustl.edu	37	chr10	52103399	52103399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gcacctccttaggaggtactCgttcgtggacgaccgagatc	12	12	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	10	52103399	52103399	C	T	SNP	SGMS1	ENST00000361781	human	ensembl	69_37n	-1	known	missense	c.476	p.R159Q	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964	36	0	0	22	4	15.38	-	-	-	T	52103399	C	T	52103399	3	4	951	1	0	0	0	0	1	0	0	0	14302	884	31	1	785	1	SGMS1	10	52103399	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	37540162	52103399	83431348	42	75995										
ANXA7	0	genome.wustl.edu	37	chr10	75139669	75139669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aaccactttctacatatccgGaaaactcacggctcacactg	5	14	3	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	10	75139669	75139669	G	A	SNP	ANXA7	ENST00000372919	human	ensembl	69_37n	-1	known	missense	c.1199	p.S400F	0.997	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVII,prints_AnnexinIV	-	no_errors	ANXA7	HGNC	ENSG00000138279	33	0	0	24	4	14.29	-	-	-	A	75139669	G	A	75139669	3	1	951	1	0	0	0	0	1	0	0	0	722	1174	41	2	279	2	ANXA7	10	75139669	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	23036270	75139669	60395078	43	75996										
OR4S2	0	genome.wustl.edu	37	chr11	55418888	55418888	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	actacccttttgtggacccaAtgagatagatcactactttt	6	10	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	11	55418888	55418888	A	G	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	1	known	missense	c.509	p.N170S	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	23	0	0	18	5	21.74	-	-	-	G	55418888	A	G	55418888	3	3	951	1	0	0	0	0	1	0	0	0	11156	101	4	5	511	5	OR4S2	11	55418888	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09		55418888	79587628	44	75997										
HTR3B	0	genome.wustl.edu	37	chr11	113815302	113815302	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tggcttctctcagggcacttCttcaccatctgcatggcctt	8	14	5	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	11	113815302	113815302	C	T	SNP	HTR3B	ENST00000543092	human	ensembl	69_37n	1	putative	missense	c.490	p.L164F	1.000	NULL	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_5HT3_rcpt_A,prints_Neur_channel	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HTR3B	HGNC	ENSG00000149305	31	0	0	23	14	37.84	-	-	-	T	113815302	C	T	113815302	3	4	951	1	0	0	0	0	1	0	0	0	7499	912	32	2	945	2	HTR3B	11	113815302	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	58396414	113815302	21191214	45	75998										
VWA5A	0	genome.wustl.edu	37	chr11	123993833	123993833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cagctgcgaatacaggcagcCaaggtaaagctagtttcttt	10	9	1	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	11	123993833	123993833	C	T	SNP	VWA5A	ENST00000392748	human	ensembl	69_37n	1	known	silent	c.927	p.A309	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002	28	0	0	21	7	25	-	-	-	T	123993833	C	T	123993833	2	4	951	1	0	0	0	0	0	0	0	1	17339	581	21	4		4	VWA5A	11	123993833	Silent	SNP	C	TCGA-LL-A441-01A-11D-A243-09	10178531	123993833	11012683	46	75999										
DYRK4	0	genome.wustl.edu	37	chr12	4705773	4705773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aggtttcaccagcaggccctGatggagctgaagatcctgga	13	10	1	3			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	12	4705773	4705773	G	A	SNP	DYRK4	ENST00000010132	human	ensembl	69_37n	1	known	silent	c.438	p.L146	0.998	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	48	0	0	38	9	19.15	-	-	-	A	4705773	G	A	4705773	2	1	951	1	0	0	0	0	0	0	0	1	4893	1277	45	2		2	DYRK4	12	4705773	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09		4705773	129146122	47	76000										
C12orf76	0	genome.wustl.edu	37	chr12	110486272	110486272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggaggctgcagaggccaaggTacagccacggtaacgctgga	16	10	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	12	110486272	110486272	T	C	SNP	C12orf76	ENST00000551185	human	ensembl	69_37n	-1	known	missense	c.29	p.Y10C	0.000	NULL	NULL	-	no_errors	C12orf76	HGNC	ENSG00000174456	8	0	0	5	6	54.55	-	-	-	C	110486272	T	C	110486272	3	2	951	1	0	0	0	0	1	0	0	0	1727	1653	57	5		5	C12orf76	12	110486272	Missense_Mutation	SNP	T	TCGA-LL-A441-01A-11D-A243-09	105780499	110486272	23365623	48	76001										
TCTN1	0	genome.wustl.edu	37	chr12	111085062	111085062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ggttatagaagtgaagtggaCtaaatacggatccctgctga	12	6	0	3			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	12	111085062	111085062	C	A	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	1	known	missense	c.1556	p.T519N	1.000	NULL	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	26	0	0	21	7	25	-	-	-	A	111085062	C	A	111085062	3	1	951	1	0	0	0	0	1	0	0	0	15817	565	20	4	1778	4	TCTN1	12	111085062	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	598790	111085062	22766833	49	76002										
LRCH1	0	genome.wustl.edu	37	chr13	47243213	47243213	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tgcctgtgtggtctgcctctCaaagtcttaatcgcaagtaa	9	10	3	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	13	47243213	47243213	C	G	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	1	known	silent	c.501	p.L167	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	28	0	0	30	6	16.22	-	-	-	G	47243213	C	G	47243213	2	3	951	1	0	0	0	0	0	0	0	1	8998	813	29	2		2	LRCH1	13	47243213	Silent	SNP	C	TCGA-LL-A441-01A-11D-A243-09		47243213	67926665	50	76003										
RNASE9	0	genome.wustl.edu	37	chr14	21026773	21026773	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gtcagagagctcggaacataCtctcacaagaacgcggagcc	11	12	2	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	14	21026773	21026773	C	T	SNP	RNASE9	ENST00000553706	human	ensembl	69_37n	-1	putative	splice_site	c.1+1	e1+1	0.000	-	-	-	no_errors	RNASE9	HGNC	ENSG00000188655	35	0	0	22	5	18.52	-	-	-	T	21026773	C	T	21026773	5	4	951	1	0	0	0	0	0	0	1	0	13496	579	20	4	643	4	RNASE9	14	21026773	Splice_Site	SNP	C	TCGA-LL-A441-01A-11D-A243-09		21026773	86322767	51	76004										
WDR72	0	genome.wustl.edu	37	chr15	54008807	54008807	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gaagtgagtgtacttacacaGattgcagtgtgcctgtaagg	13	6	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	15	54008807	54008807	G	T	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	silent	c.336	p.I112	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	27	0	0	12	3	20	-	-	-	T	54008807	G	T	54008807	2	4	951	1	0	0	0	0	0	0	0	1	17419	932	33	2		2	WDR72	15	54008807	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09		54008807	48522585	52	76005										
CHD2	0	genome.wustl.edu	37	chr15	93567820	93567820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctcagatcctcgctcaccccCttctcagaaatctcctcacg	4	19	5	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	15	93567820	93567820	C	T	SNP	CHD2	ENST00000394196	human	ensembl	69_37n	1	novel	missense	c.5372	p.P1791L	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	47	0	0	40	6	13.04	-	-	-	T	93567820	C	T	93567820	3	4	951	1	0	0	0	0	1	0	0	0	3354	681	24	4	5526	4	CHD2	15	93567820	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	39559013	93567820	8963572	53	76006										
LUC7L	0	genome.wustl.edu	37	chr16	278856	278856	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gagcgggccaggttttcgagGcccatccggctccctcgggt	15	14	0	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	16	278856	278856	G	A	SNP	LUC7L	ENST00000494366	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.023	-	-	-	no_errors	LUC7L	HGNC	ENSG00000007392	26	0	0	15	3	15.79	-	-	-	A	278856	G	A	278856	1	1	951	0	1	0	0	0	0	0	0	0	9148	1218	42	4		4	LUC7L	16	278856	RNA	SNP	G	TCGA-LL-A441-01A-11D-A243-09		278856	90075897	54	76007										
OTOA	0	genome.wustl.edu	37	chr16	21742185	21742185	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cagcactggacagccgagacCacgaaggacttgggaccctt	12	13	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	16	21742185	21742185	C	G	SNP	OTOA	ENST00000286149	human	ensembl	69_37n	1	known	silent	c.2277	p.T759	0.000	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	44	0	0	23	5	17.86	-	-	-	G	21742185	C	G	21742185	2	3	951	1	0	0	0	0	0	0	0	1	11375	581	21	4		4	OTOA	16	21742185	Silent	SNP	C	TCGA-LL-A441-01A-11D-A243-09	21463329	21742185	68612568	55	76008										
PKD1L2	0	genome.wustl.edu	37	chr16	81208203	81208203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gaggtggtgtcagccgcttgGgagacaccacaggtttctcc	14	11	2	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	16	81208203	81208203	G	T	SNP	PKD1L2	ENST00000527937	human	ensembl	69_37n	-1	known	missense	c.668	p.P223H	0.001	pfscan_REJ-like	superfamily_Coatomer/clathrin_app_Ig-like,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	28	0	0	36	4	10	-	-	-	T	81208203	G	T	81208203	3	4	951	1	0	0	0	0	1	0	0	0	12039	1247	43	4		4	PKD1L2	16	81208203	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	59466018	81208203	9146550	56	76009										
ALOX15	0	genome.wustl.edu	37	chr17	4541604	4541604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	agcagagcgcctcagcaccaCggggttggcgccattaagaa	13	12	1	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	17	4541604	4541604	C	T	SNP	ALOX15	ENST00000545513	human	ensembl	69_37n	-1	known	missense	c.781	p.V261M	0.997	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX15	HGNC	ENSG00000161905	25	0	0	24	4	14.29	-	-	-	T	4541604	C	T	4541604	3	4	951	1	0	0	0	0	1	0	0	0	538	536	19	1	1309	1	ALOX15	17	4541604	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09		4541604	76653606	57	76010										
TNFRSF13B	0	genome.wustl.edu	37	chr17	16852070	16852070	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	acctggacttgcttctgagcCtctgtgctccaatccttggt	9	13	2	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	17	16852070	16852070	C	G	SNP	TNFRSF13B	ENST00000261652	human	ensembl	69_37n	-1	known	missense	c.427	p.G143R	0.962	NULL	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505	34	0	0	23	15	39.47	-	-	-	G	16852070	C	G	16852070	3	3	951	1	0	0	0	0	1	0	0	0	16382	681	24	4	466	4	TNFRSF13B	17	16852070	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	12310466	16852070	64343140	58	76011										
TBKBP1	0	genome.wustl.edu	37	chr17	45776851	45776851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	gctgaagcagctgcaggagaCccgggcccaggtaaatgcag	15	11	0	2			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	17	45776851	45776851	C	T	SNP	TBKBP1	ENST00000361722	human	ensembl	69_37n	1	known	missense	c.800	p.T267I	0.993	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933	31	0	0	34	4	10.53	-	-	-	T	45776851	C	T	45776851	3	4	951	1	0	0	0	0	1	0	0	0	15733	507	18	4	818	4	TBKBP1	17	45776851	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	28924781	45776851	35418359	59	76012										
FN3K	0	genome.wustl.edu	37	chr17	80708422	80708422	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	acccggcttccttctatggcCattccgagtttgaactggca	9	13	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	17	80708422	80708422	C	G	SNP	FN3K	ENST00000300784	human	ensembl	69_37n	1	known	missense	c.721	p.H241D	1.000	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3K	HGNC	ENSG00000167363	40	0	0	37	5	11.9	-	-	-	G	80708422	C	G	80708422	3	3	951	1	0	0	0	0	1	0	0	0	6009	594	21	4	743	4	FN3K	17	80708422	Missense_Mutation	SNP	C	TCGA-LL-A441-01A-11D-A243-09	34931571	80708422	486788	60	76013										
NLRP7	0	genome.wustl.edu	37	chr19	55449554	55449554	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	agagcagaaatctgtccagaGgcgaagagagcgaagatcct	13	8	1	5			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	19	55449554	55449554	G	C	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	missense	c.2071	p.L691V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	54	0	0	37	5	11.9	-	-	-	C	55449554	G	C	55449554	3	2	951	1	0	0	0	0	1	0	0	0	10554	1000	35	4	1154	4	NLRP7	19	55449554	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09		55449554	3679429	61	76014										
MKKS	0	genome.wustl.edu	37	chr20	10385993	10385993	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ctttgcagtcaaacagtccaAggtcaggttgctggctgagc	12	10	2	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	20	10385993	10385993	A	T	SNP	MKKS	ENST00000347364	human	ensembl	69_37n	-1	known	missense	c.1615	p.L539M	0.190	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	MKKS	HGNC	ENSG00000125863	28	0	0	26	4	13.33	-	-	-	T	10385993	A	T	10385993	3	4	951	1	0	0	0	0	1	0	0	0	9671	69	3	5	101	5	MKKS	20	10385993	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09		10385993	52639527	62	76015										
DLGAP4	0	genome.wustl.edu	37	chr20	35128637	35128637	+	Missense_Mutation	SNP	G	G	C													0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tcacagtatgtcctcccgacGggacacagactcggataccc							TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	20	35128637	35128637	G	C	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	missense	c.2135	p.R712P	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	26	0	0	25	7	21.88	-	-	-	C	35128637	G	C	35128637	3	2	951	1	0	0	0	0	1	0	0	0	4598	1116	39	3	2284	3	DLGAP4	20	35128637	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	24742644	35128637	27896883	63	76016	529	2								
DLGAP4	0	genome.wustl.edu	37	chr20	35128638	35128638	+	Silent	SNP	G	G	C													0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	cacagtatgtcctcccgacgGgacacagactcggataccca							TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	20	35128638	35128638	G	C	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	1	known	silent	c.2136	p.R712	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	26	0	0	23	8	25.81	-	-	-	C	35128638	G	C	35128638	2	2	951	1	0	0	0	0	0	0	0	1	4598	1219	43	4		4	DLGAP4	20	35128638	Silent	SNP	G	TCGA-LL-A441-01A-11D-A243-09	1	35128638	27896882	64	76017	529	2								
GATA5	0	genome.wustl.edu	37	chr20	61048600	61048600	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	ccgcagttgacacactcacgAccctcacccgggaactcctc	7	19	2	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	20	61048600	61048600	A	G	SNP	GATA5	ENST00000252997	human	ensembl	69_37n	-1	known	silent	c.558	p.G186	0.066	smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA5	HGNC	ENSG00000130700	55	0	0	46	8	14.55	-	-	-	G	61048600	A	G	61048600	2	3	951	1	0	0	0	0	0	0	0	1	6307	262	10	5		5	GATA5	20	61048600	Silent	SNP	A	TCGA-LL-A441-01A-11D-A243-09	25919962	61048600	1976920	65	76018										
PPP1R3F	0	genome.wustl.edu	37	chrX	49142944	49142944	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	aaggggacagccccaaggaaTcgcctccagaaatcctctcc	9	15	1	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	X	49142944	49142944	T	G	SNP	PPP1R3F	ENST00000055335	human	ensembl	69_37n	1	known	missense	c.1792	p.S598A	0.997	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769	21	0	0	27	6	18.18	-	-	-	G	49142944	T	G	49142944	3	3	951	1	0	0	0	0	1	0	0	0	12452	1435	50	5	1806	5	PPP1R3F	23	49142944	Missense_Mutation	SNP	T	TCGA-LL-A441-01A-11D-A243-09		49142944	106127616	66	76019										
HNRNPH2	0	genome.wustl.edu	37	chrX	100667605	100667605	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tatgcagcggccaggtccctAtgataggccgggggctggca	16	11	0	1			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	X	100667605	100667605	A	T	SNP	HNRNPH2	ENST00000316594	human	ensembl	69_37n	1	known	missense	c.629	p.Y210F	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945	47	0	0	30	5	14.29	-	-	-	T	100667605	A	T	100667605	3	4	951	1	0	0	0	0	1	0	0	0	7318	449	16	5	631	5	HNRNPH2	23	100667605	Missense_Mutation	SNP	A	TCGA-LL-A441-01A-11D-A243-09	51524661	100667605	54602955	67	76020										
HAUS7	0	genome.wustl.edu	37	chrX	152721081	152721081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0597014925373134	4	0.913683819682119	0.9090318388564	0.629329734592893	1.06712433257056	0.545454545454546	1	0	tcagggcctgggcgctggcaGcactcgcccagctcgtcgtc	14	16	1	0			TCGA-LL-A441-01A-11D-A243-09	TCGA-LL-A441-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4deb919-227b-42f0-8e50-b2963c13c4fc	20d61f40-5bee-48f5-8981-127982a0995c	X	152721081	152721081	G	A	SNP	HAUS7	ENST00000421080	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	0.873	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397	45	0	0	30	4	11.76	-	-	-	A	152721081	G	A	152721081	3	1	951	1	0	0	0	0	1	0	0	0	7022	963	34	4	239	4	HAUS7	23	152721081	Missense_Mutation	SNP	G	TCGA-LL-A441-01A-11D-A243-09	52053476	152721081	2549479	68	76021										
SLC45A1	0	genome.wustl.edu	37	chr1	8390620	8390620	+	Frame_Shift_Del	DEL	G	G	-													0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cagcttcatcagcagggacaGctccctgacgggcatcagcg							TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	8390620	8390620	G	-	DEL	SLC45A1	ENST00000377479	human	ensembl	69_37n	1	known	frame_shift_del	c.1169	p.S390fs	0.999	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	64	0	0	60	18	21.95	-	-	-	-	8390620	G	-	8390620	7	5	952	1	0	1	0	1	0	0	0	0	14729	971	34	0	1081	0	SLC45A1	1	8390620	Frame_Shift_Del	DEL	G	TCGA-LL-A50Y-01A-11D-A25Q-09		8390620	240860001	1	76022										
CROCC	0	genome.wustl.edu	37	chr1	17273313	17273313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ggcaggcagagcaggaggccAcagtggcgcgggaagagcag	20	9	0	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	17273313	17273313	A	G	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	1	known	missense	c.2341	p.T781A	0.013	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	58	0	0	63	16	20	-	-	-	G	17273313	A	G	17273313	3	3	952	1	0	0	0	0	1	0	0	0	3923	159	6	5	2407	5	CROCC	1	17273313	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	8882693	17273313	231977308	2	76023										
CDCP2	0	genome.wustl.edu	37	chr1	54598912	54598912	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	catggatgtcctcccgccccGcggctgagaagtcgatgtac	12	14	0	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	54598912	54598912	G	A	SNP	CDCP2	ENST00000530059	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	CDCP2	HGNC	ENSG00000157211	29	0	0	39	14	26.42	-	-	-	A	54598912	G	A	54598912	1	1	952	0	1	0	0	0	0	0	0	0	3123	1102	38	1		1	CDCP2	1	54598912	RNA	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	37325599	54598912	194651709	3	76024										
FAM73A	0	genome.wustl.edu	37	chr1	78309071	78309071	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ttgagcatcgcatccacggaTtcctttgcttccgcagcaga	9	13	0	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	78309071	78309071	T	C	SNP	FAM73A	ENST00000370791	human	ensembl	69_37n	1	known	silent	c.975	p.D325	0.996	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	79	0	0	38	23	37.7	-	-	-	C	78309071	T	C	78309071	2	2	952	1	0	0	0	0	0	0	0	1	5662	1490	52	5		5	FAM73A	1	78309071	Silent	SNP	T	TCGA-LL-A50Y-01A-11D-A25Q-09	23710159	78309071	170941550	4	76025										
AMY2B	0	genome.wustl.edu	37	chr1	104113465	104113465	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	atcagcactggattgtagaaCttgttcctgattttgacatt	8	7	1	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	104113465	104113465	C	A	SNP	AMY2B	ENST00000491397	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038	13	0	0	6	4	40	-	-	-	A	104113465	C	A	104113465	1	1	952	0	1	0	0	0	0	0	0	0	595	580	20	4		4	AMY2B	1	104113465	RNA	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09	25804394	104113465	145137156	5	76026										
CD101	0	genome.wustl.edu	37	chr1	117576699	117576699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	accacaaataggagggaagaCgaggaggaagatgaaggcaa	15	5	0	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	117576699	117576699	C	T	SNP	CD101	ENST00000256652	human	ensembl	69_37n	1	known	silent	c.3042	p.D1014	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD101	HGNC	ENSG00000134256	27	0	0	15	9	37.5	-	-	-	T	117576699	C	T	117576699	2	4	952	1	0	0	0	0	0	0	0	1	2991	535	19	1		1	CD101	1	117576699	Silent	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09	13463234	117576699	131673922	6	76027										
CTNNA2	0	genome.wustl.edu	37	chr2	80101233	80101233	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	tcctcactgtcgggatgagaTggcagccgcccgaggggctc	15	13	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	2	80101233	80101233	T	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	1	known	missense	c.719	p.M240K	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	22	0	0	5	8	61.54	-	-	-	A	80101233	T	A	80101233	3	1	952	1	0	0	0	0	1	0	0	0	4045	1464	51	5	635	5	CTNNA2	2	80101233	Missense_Mutation	SNP	T	TCGA-LL-A50Y-01A-11D-A25Q-09		80101233	163098140	7	76028										
OBSL1	0	genome.wustl.edu	37	chr2	220431781	220431781	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	atggtggagagatcgagggaGaagacggcatcttccccgtc	15	9	1	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	2	220431781	220431781	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.1905	p.F635	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	45	0	0	41	25	37.88	-	-	-	A	220431781	G	A	220431781	2	1	952	1	0	0	0	0	0	0	0	1	10886	933	33	2		2	OBSL1	2	220431781	Silent	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	140330548	220431781	22767592	8	76029										
SETMAR	0	genome.wustl.edu	37	chr3	4345766	4345766	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ggcaaggaaaatacactttcCggtttgctgtaagaactcag	10	8	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	4345766	4345766	C	T	SNP	SETMAR	ENST00000462115	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	SETMAR	HGNC	ENSG00000170364	37	0	0	19	3	13.64	-	-	-	T	4345766	C	T	4345766	1	4	952	0	1	0	0	0	0	0	0	0	14228	667	23	1		1	SETMAR	3	4345766	RNA	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09		4345766	193676664	9	76030										
TGFBR2	0	genome.wustl.edu	37	chr3	30713273	30713273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ggcagcagaagctgagttcaAcctgggaaaccggcaagacg	14	10	1	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	30713273	30713273	A	G	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	1	known	missense	c.673	p.T225A	0.044	pirsf_Transform_growth_fac-b_typ-2	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	35	0	0	21	13	38.24	-	-	-	G	30713273	A	G	30713273	3	3	952	1	0	0	0	0	1	0	0	0	15917	43	2	5	691	5	TGFBR2	3	30713273	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	26367507	30713273	167309157	10	76031										
TRAK1	0	genome.wustl.edu	37	chr3	42234667	42234667	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	atcacacacctgctatcgcaAatagttgatttgcagaaaaa	6	9	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	42234667	42234667	A	G	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	1	known	silent	c.696	p.Q232	0.931	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	59	0	0	40	21	34.43	-	-	-	G	42234667	A	G	42234667	2	3	952	1	0	0	0	0	0	0	0	1	16545	11	1	5		5	TRAK1	3	42234667	Silent	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	11521394	42234667	155787763	11	76032										
COL7A1	0	genome.wustl.edu	37	chr3	48625810	48625810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cgcgctgcaccacgtgaagcGtccccagggctggcggagcc	15	16	0	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	48625810	48625810	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.2615	p.T872M	0.856	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	18	0	0	16	8	33.33	-	-	-	A	48625810	G	A	48625810	3	1	952	1	0	0	0	0	1	0	0	0	3734	1145	40	1	6615	1	COL7A1	3	48625810	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	6391143	48625810	149396620	12	76033										
MST1	0	genome.wustl.edu	37	chr3	49721622	49721622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	aagtgggcccccgtagtcacCctggcaggtaggagaactga	14	11	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	49721622	49721622	C	T	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.2017	p.G673S	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	107	1	0.93	72	11	13.25	-	-	-	T	49721622	C	T	49721622	3	4	952	1	0	0	0	0	1	0	0	0	9962	637	22	4	164	4	MST1	3	49721622	Missense_Mutation	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09	1095812	49721622	148300808	13	76034										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	16	0	0	18	13	41.94	-	-	-	G	178952085	A	G	178952085	3	3	952	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	129230463	178952085	19070345	14	76035										
MFI2	0	genome.wustl.edu	37	chr3	196730792	196730792	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ctgcgcccgagcactgctgaGacgacatcccttccagcgcc	10	18	0	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	196730792	196730792	G	A	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.2117	p.S706F	0.981	smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	47	0	0	40	18	31.03	-	-	-	A	196730792	G	A	196730792	3	1	952	1	0	0	0	0	1	0	0	0	9593	942	33	2	107	2	MFI2	3	196730792	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	17778707	196730792	1291638	15	76036										
VDAC1	0	genome.wustl.edu	37	chr5	133316707	133316708	+	RNA	INS	-	-	T													0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	accttgaaatgcaagttgtcINSttttttttttttttaatccc							TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	5	133316707	133316708	-	T	INS	VDAC1	ENST00000492324	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	VDAC1	HGNC	ENSG00000213585	8	0	0	11	4	26.67	-	-	-	T	133316708	-	T	133316707	6	5	952	0	1	1	1	0	0	0	0	0	17243	928	32	0		0	VDAC1	5	133316707	RNA	INS	-	TCGA-LL-A50Y-01A-11D-A25Q-09		133316707	47598553	16	76037										
HBS1L	0	genome.wustl.edu	37	chr6	135299856	135299856	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ggaatttcaatattaaagatGaggattcgggctctgaaacg	11	5	2	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	6	135299856	135299856	G	A	SNP	HBS1L	ENST00000367837	human	ensembl	69_37n	-1	known	silent	c.1758	p.L586	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_DUF1916,pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	HBS1L	HGNC	ENSG00000112339	38	0	0	29	4	12.12	-	-	-	A	135299856	G	A	135299856	2	1	952	1	0	0	0	0	0	0	0	1	7038	1277	45	2		2	HBS1L	6	135299856	Silent	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		135299856	35815211	17	76038										
GPNMB	0	genome.wustl.edu	37	chr7	23306203	23306203	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	aactgccagattaacagataTggccactttcaagccaccat	6	12	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	23306203	23306203	T	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	silent	c.1122	p.Y374	0.894	smart_PKD/Chitinase_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	51	0	0	31	18	36.73	-	-	-	C	23306203	T	C	23306203	2	2	952	1	0	0	0	0	0	0	0	1	6670	1471	51	5		5	GPNMB	7	23306203	Silent	SNP	T	TCGA-LL-A50Y-01A-11D-A25Q-09		23306203	135832460	18	76039										
RUNDC3B	0	genome.wustl.edu	37	chr7	87323239	87323239	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	taaagagatttcccaaagttGcagatggctggctcatctcc	9	10	2	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	87323239	87323239	G	A	SNP	RUNDC3B	ENST00000338056	human	ensembl	69_37n	1	known	missense	c.254	p.C85Y	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784	53	0	0	47	26	35.62	-	-	-	A	87323239	G	A	87323239	3	1	952	1	0	0	0	0	1	0	0	0	13831	1319	46	4	264	4	RUNDC3B	7	87323239	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	64017036	87323239	71815424	19	76040										
MLL3	0	genome.wustl.edu	37	chr7	151880169	151880169	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	aatgctatcttgctgttgctGccttttcatggaatcatttg	8	8	3	0			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	151880169	151880169	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5155	p.Q1719*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	108	0	0	61	44	41.9	-	-	-	A	151880169	G	A	151880169	4	1	952	1	0	0	0	0	0	1	0	0	9693	1328	46	4	9680	4	MLL3	7	151880169	Nonsense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	64556930	151880169	7258494	20	76041										
TGS1	0	genome.wustl.edu	37	chr8	56711725	56711725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	tgctagcaactgttccagatGagcaggattgtgttactcaa	10	8	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	8	56711725	56711725	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	1	known	missense	c.1795	p.E599K	0.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	31	0	0	11	3	21.43	-	-	-	A	56711725	G	A	56711725	3	1	952	1	0	0	0	0	1	0	0	0	15932	1291	45	2	1825	2	TGS1	8	56711725	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		56711725	89652297	21	76042										
KLHL9	0	genome.wustl.edu	37	chr9	21333116	21333116	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cgaatgccaccaagtgactcTggaagatcaaaaactttatg	8	9	2	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	9	21333116	21333116	T	A	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	silent	c.1743	p.P581	0.986	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	58	0	0	51	27	34.62	-	-	-	A	21333116	T	A	21333116	2	1	952	1	0	0	0	0	0	0	0	1	8449	1567	55	5		5	KLHL9	9	21333116	Silent	SNP	T	TCGA-LL-A50Y-01A-11D-A25Q-09		21333116	119880315	22	76043										
PIP5KL1	0	genome.wustl.edu	37	chr9	130689444	130689444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ccactcacctctcggagatgCggccggcggggtagaagacg	15	13	2	3			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	9	130689444	130689444	C	T	SNP	PIP5KL1	ENST00000300432	human	ensembl	69_37n	-1	known	missense	c.29	p.R10H	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5KL1	HGNC	ENSG00000167103	47	0	0	33	4	10.81	-	-	-	T	130689444	C	T	130689444	3	4	952	1	0	0	0	0	1	0	0	0	12016	768	27	1	562	1	PIP5KL1	9	130689444	Missense_Mutation	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09	109356328	130689444	10523987	23	76044										
KIF20B	0	genome.wustl.edu	37	chr10	91498016	91498016	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ttactcttgatgttcaaataCagcatgtagttgaaggaaag	9	5	2	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	10	91498016	91498016	C	T	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	nonsense	c.3508	p.Q1170*	0.208	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	36	0	0	14	14	50	-	-	-	T	91498016	C	T	91498016	4	4	952	1	0	0	0	0	0	1	0	0	8339	479	17	4	3372	4	KIF20B	10	91498016	Nonsense_Mutation	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09		91498016	44036731	24	76045										
PCGF6	0	genome.wustl.edu	37	chr10	105110755	105110756	+	Frame_Shift_Del	DEL	CA	CA	-													0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	gagacaggaggcggaggcggCaaggctgcagctccctcggt							TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	10	105110755	105110756	CA	-	DEL	PCGF6	ENST00000369847	human	ensembl	69_37n	-1	known	frame_shift_del	c.69_68	p.L23fs	0.953:0.836	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	13	0	0	7	4	36.36	-	-	-	-	105110756	CA	-	105110755	7	5	952	1	0	1	0	1	0	0	0	0	11651	709	25	0	1023	0	PCGF6	10	105110755	Frame_Shift_Del	DEL	CA	TCGA-LL-A50Y-01A-11D-A25Q-09	13612739	105110755	30423992	25	76046										
ANO3	0	genome.wustl.edu	37	chr11	26621259	26621259	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	taatcattatgttgctgaatCttgtaagtgtctataatgtt	7	4	3	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	26621259	26621259	C	T	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	1	known	missense	c.1834	p.L612F	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	55	0	0	33	17	34	-	-	-	T	26621259	C	T	26621259	3	4	952	1	0	0	0	0	1	0	0	0	697	913	32	2	1900	2	ANO3	11	26621259	Missense_Mutation	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09		26621259	108385257	26	76047										
TUT1	0	genome.wustl.edu	37	chr11	62343415	62343415	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	gagctgggctgcagaagaggGagcagcccccagtcccgacc	15	14	0	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	62343415	62343415	G	A	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	silent	c.1890	p.L630	0.995	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	21	0	0	20	19	48.72	-	-	-	A	62343415	G	A	62343415	2	1	952	1	0	0	0	0	0	0	0	1	16877	1161	41	2		2	TUT1	11	62343415	Silent	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	35722156	62343415	72663101	27	76048										
MCAM	0	genome.wustl.edu	37	chr11	119183643	119183643	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ctcgactccacagtctgggaCgactgaatgtggacccctgg	12	13	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	119183643	119183643	C	T	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	silent	c.576	p.S192	0.000	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	39	0	0	32	20	38.46	-	-	-	T	119183643	C	T	119183643	2	4	952	1	0	0	0	0	0	0	0	1	9439	523	19	1		1	MCAM	11	119183643	Silent	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09	56840228	119183643	15822873	28	76049										
ROBO4	0	genome.wustl.edu	37	chr11	124756666	124756666	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ggctgttgggacgctgatgtAcccataggtggtggggggtg	20	6	0	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	124756666	124756666	A	G	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.2488	p.Y830H	0.945	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	58	0	0	25	17	40.48	-	-	-	G	124756666	A	G	124756666	3	3	952	1	0	0	0	0	1	0	0	0	13602	391	14	5	547	5	ROBO4	11	124756666	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	5573023	124756666	10249850	29	76050										
POU4F1	0	genome.wustl.edu	37	chr13	79177419	79177419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cttgtgctcagggagggtggGatgcatggcaaagtgaggct	18	6	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	13	79177419	79177419	G	T	SNP	POU4F1	ENST00000377208	human	ensembl	69_37n	-1	known	missense	c.43	p.P15T	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192	35	0	0	22	4	15.38	-	-	-	T	79177419	G	T	79177419	3	4	952	1	0	0	0	0	1	0	0	0	12351	1174	41	2	1224	2	POU4F1	13	79177419	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		79177419	35992459	30	76051										
CDH1	0	genome.wustl.edu	37	chr16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	aggtctcctcttggctctgcCaggagccggagccctgccac	12	16	3	0			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	73	0	0	26	41	61.19	-	-	-	T	68772218	C	T	68772218	4	4	952	1	0	0	0	0	0	1	0	0	3124	595	21	4	73	4	CDH1	16	68772218	Nonsense_Mutation	SNP	C	TCGA-LL-A50Y-01A-11D-A25Q-09		68772218	21582535	31	76052										
ZFPM1	0	genome.wustl.edu	37	chr16	88594480	88594480	+	Frame_Shift_Del	DEL	G	G	-													0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	gtcaccaagccggtgcctgcGgggggactcctgagcgtgct							TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	16	88594480	88594480	G	-	DEL	ZFPM1	ENST00000319555	human	ensembl	69_37n	1	known	frame_shift_del	c.546	p.G184fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588	37	0	0	11	16	59.26	-	-	-	-	88594480	G	-	88594480	7	5	952	1	0	1	0	1	0	0	0	0	17753	1103	39	0	568	0	ZFPM1	16	88594480	Frame_Shift_Del	DEL	G	TCGA-LL-A50Y-01A-11D-A25Q-09	19822262	88594480	1760273	32	76053										
UBTF	0	genome.wustl.edu	37	chr17	42287812	42287812	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ttcctctccgactgagccttGagcgccgcctctcgggcctt	10	17	2	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	17	42287812	42287812	G	A	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	silent	c.1389	p.L463	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	33	0	0	16	8	33.33	-	-	-	A	42287812	G	A	42287812	2	1	952	1	0	0	0	0	0	0	0	1	17006	1277	45	2		2	UBTF	17	42287812	Silent	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		42287812	38907398	33	76054										
KIF2B	0	genome.wustl.edu	37	chr17	51900667	51900667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	tctgctgaacaccccatgccGcccccgcccttatccccctt	5	22	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	17	51900667	51900667	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	1	known	silent	c.273	p.P91	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	19	0	0	17	7	29.17	-	-	-	A	51900667	G	A	51900667	2	1	952	1	0	0	0	0	0	0	0	1	8350	1074	38	1		1	KIF2B	17	51900667	Silent	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	9612855	51900667	29294543	34	76055										
OR7A5	0	genome.wustl.edu	37	chr19	14938212	14938212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	aggggttcagcatgggggtgAccacagtgtacatcactgag	15	8	2	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	14938212	14938212	A	T	SNP	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	missense	c.842	p.V281D	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	57	0	0	32	32	50	-	-	-	T	14938212	A	T	14938212	3	4	952	1	0	0	0	0	1	0	0	0	11289	275	10	5	121	5	OR7A5	19	14938212	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09		14938212	44190771	35	76056										
ZNF260	0	genome.wustl.edu	37	chr19	37005895	37005895	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	ccacatttattacatttataTgccttctttcctgtgtgact	4	10	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	37005895	37005895	T	A	SNP	ZNF260	ENST00000523638	human	ensembl	69_37n	-1	known	silent	c.246	p.A82	0.037	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF260	HGNC	ENSG00000254004	45	0	0	22	14	38.89	-	-	-	A	37005895	T	A	37005895	2	1	952	1	0	0	0	0	0	0	0	1	17898	1451	51	5		5	ZNF260	19	37005895	Silent	SNP	T	TCGA-LL-A50Y-01A-11D-A25Q-09	22067683	37005895	22123088	36	76057										
LYPD4	0	genome.wustl.edu	37	chr19	42342168	42342168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cttaggagtgctggccttgaGtttcacaaaaggctccaaat	10	9	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	42342168	42342168	G	A	SNP	LYPD4	ENST00000330743	human	ensembl	69_37n	-1	known	missense	c.379	p.L127F	0.872	NULL	pfam_LY6_UPAR	-	no_errors	LYPD4	HGNC	ENSG00000183103	59	0	0	40	21	34.43	-	-	-	A	42342168	G	A	42342168	3	1	952	1	0	0	0	0	1	0	0	0	9179	1029	36	4	369	4	LYPD4	19	42342168	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09	5336273	42342168	16786815	37	76058										
PSG6	0	genome.wustl.edu	37	chr19	43407829	43407829	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	cagcagaaggatttcttgaaAccaggtgtttggaccagcat	11	8	1	2			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	43407829	43407829	A	C	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.1285	p.F429V	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	75	0	0	37	17	31.48	-	-	-	C	43407829	A	C	43407829	3	2	952	1	0	0	0	0	1	0	0	0	12739	43	2	5	65	5	PSG6	19	43407829	Missense_Mutation	SNP	A	TCGA-LL-A50Y-01A-11D-A25Q-09	1065661	43407829	15721154	38	76059										
ZNF285	0	genome.wustl.edu	37	chr19	44891062	44891063	+	Frame_Shift_Del	DEL	CT	CT	-													0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	tggtttctcccctgtgtggaCtctctggtgaatgtgaaggt							TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	44891062	44891063	CT	-	DEL	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	frame_shift_del	c.1345_1344	p.R448fs	0.997:0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	82	0	0	43	36	45	-	-	-	-	44891063	CT	-	44891062	7	5	952	1	0	1	0	1	0	0	0	0	17918	565	20	0	431	0	ZNF285	19	44891062	Frame_Shift_Del	DEL	CT	TCGA-LL-A50Y-01A-11D-A25Q-09	1483233	44891062	14237921	39	76060										
ARFGAP1	0	genome.wustl.edu	37	chr20	61907998	61907998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	gagccgcggccctctttaggGataaggtagagatgggcccg	16	10	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	20	61907998	61907998	G	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	69_37n	1	known	missense	c.337	p.D113Y	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199	37	0	0	31	4	11.43	-	-	-	T	61907998	G	T	61907998	3	4	952	1	0	0	0	0	1	0	0	0	851	1174	41	2	347	2	ARFGAP1	20	61907998	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		61907998	1117522	40	76061										
PDE9A	0	genome.wustl.edu	37	chr21	44174151	44174151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.146341463414634	6	0.162689076389333	2.23479490806223	NA	2.23479490806223	0.00216450216450216	0.0441017316017315	0	tgcggaagccgacctttgacGtctggctttgggagcccaat	13	11	1	1			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	21	44174151	44174151	G	A	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	1	known	missense	c.787	p.V263I	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	33	0	0	29	12	29.27	-	-	-	A	44174151	G	A	44174151	3	1	952	1	0	0	0	0	1	0	0	0	11728	1145	40	1	905	1	PDE9A	21	44174151	Missense_Mutation	SNP	G	TCGA-LL-A50Y-01A-11D-A25Q-09		44174151	3955744	41	76062										
CLCN6	0	genome.wustl.edu	37	chr1	11898987	11898987	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cttcctcctgaaatgttgctCttcactccgtaccactggtg	7	14	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	11898987	11898987	C	T	SNP	CLCN6	ENST00000376496	human	ensembl	69_37n	1	novel	silent	c.2799	p.L933	0.003	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021	47	0	0	20	6	23.08	-	-	-	T	11898987	C	T	11898987	2	4	953	1	0	0	0	0	0	0	0	1	3497	928	32	2		2	CLCN6	1	11898987	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		11898987	237351634	1	76063										
ARID1A	0	genome.wustl.edu	37	chr1	27057874	27057874	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agccatcccagcctccacatCagcagtccccggctccatac	6	20	1	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	27057874	27057874	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	1	known	nonsense	c.1582	p.Q528*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	67	0	0	30	16	34.78	-	-	-	T	27057874	C	T	27057874	4	4	953	1	0	0	0	0	0	1	0	0	915	827	29	2	1592	2	ARID1A	1	27057874	Nonsense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	15158887	27057874	222192747	2	76064										
LEPR	0	genome.wustl.edu	37	chr1	66081710	66081710	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gcccctgatgaaaaatgactCattgtgcagtgttcagagat	10	8	2	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	66081710	66081710	C	T	SNP	LEPR	ENST00000349533	human	ensembl	69_37n	1	known	missense	c.2015	p.S672L	0.995	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	40	0	0	10	12	54.55	-	-	-	T	66081710	C	T	66081710	3	4	953	1	0	0	0	0	1	0	0	0	8782	838	29	2	2065	2	LEPR	1	66081710	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	39023836	66081710	183168911	3	76065										
CHD1L	0	genome.wustl.edu	37	chr1	146756023	146756023	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctttgtgttttatgttgttaGaaaatcatatgtacttattt	6	3	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	146756023	146756023	G	A	SNP	CHD1L	ENST00000369258	human	ensembl	69_37n	1	known	splice_site	c.1706-1	e16-1	0.993	-	-	-	no_errors	CHD1L	HGNC	ENSG00000131778	77	0	0	97	22	18.49	-	-	-	A	146756023	G	A	146756023	5	1	953	1	0	0	0	0	0	0	1	0	3353	956	33	2	1767	2	CHD1L	1	146756023	Splice_Site	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	80674313	146756023	102494598	4	76066										
TCHH	0	genome.wustl.edu	37	chr1	152082173	152082173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttcctcctgctgcagctcctCttcctcgcggtattgcctct	7	17	2	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	152082173	152082173	C	G	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.3520	p.E1174Q	0.736	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	133	0	0	145	27	15.7	-	-	-	G	152082173	C	G	152082173	3	3	953	1	0	0	0	0	1	0	0	0	15795	922	32	2	2315	2	TCHH	1	152082173	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	5326150	152082173	97168448	5	76067										
CLK2	0	genome.wustl.edu	37	chr1	155237829	155237829	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gtcagggtctttctcattgaTtttctctagcacgttgatct	8	9	5	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	155237829	155237829	T	C	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.643	p.I215V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	114	0	0	126	14	10	-	-	-	C	155237829	T	C	155237829	3	2	953	1	0	0	0	0	1	0	0	0	3567	1493	52	5	888	5	CLK2	1	155237829	Missense_Mutation	SNP	T	TCGA-LL-A5YL-01A-12D-A29N-09	3155656	155237829	94012792	6	76068										
FAM163A	0	genome.wustl.edu	37	chr1	179782251	179782251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ggatgacagcgggaacggttGtgatcactggcggaatccta	15	8	1	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	179782251	179782251	G	A	SNP	FAM163A	ENST00000341785	human	ensembl	69_37n	1	known	missense	c.19	p.V7M	1.000	NULL	NULL	-	no_errors	FAM163A	HGNC	ENSG00000143340	77	0	0	101	13	11.4	-	-	-	A	179782251	G	A	179782251	3	1	953	1	0	0	0	0	1	0	0	0	5516	1377	48	4	21	4	FAM163A	1	179782251	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	24544422	179782251	69468370	7	76069										
SMG7	0	genome.wustl.edu	37	chr1	183486940	183486940	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctgttcctagaggcagctagTggcttctatactcaggtgag	12	9	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	1	183486940	183486940	T	A	SNP	SMG7	ENST00000507469	human	ensembl	69_37n	1	known	missense	c.297	p.S99R	1.000	pfam_EST1	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	31	0	0	43	5	10.42	-	-	-	A	183486940	T	A	183486940	3	1	953	1	0	0	0	0	1	0	0	0	14887	1693	59	5	311	5	SMG7	1	183486940	Missense_Mutation	SNP	T	TCGA-LL-A5YL-01A-12D-A29N-09	3704689	183486940	65763681	8	76070										
EPAS1	0	genome.wustl.edu	37	chr2	46525023	46525023	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ggagcccaggtgctcggcgtCtgaacgtctcaaagggccac	14	13	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	2	46525023	46525023	C	T	SNP	EPAS1	ENST00000467888	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	EPAS1	HGNC	ENSG00000116016	31	0	0	21	10	32.26	-	-	-	T	46525023	C	T	46525023	1	4	953	0	1	0	0	0	0	0	0	0	5187	928	32	2		2	EPAS1	2	46525023	RNA	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		46525023	196674350	9	76071										
ZRANB3	0	genome.wustl.edu	37	chr2	135965355	135965355	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttcacagtgagatctgcctgGactgtgtatggatttagaaa	11	6	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	2	135965355	135965355	G	A	SNP	ZRANB3	ENST00000264159	human	ensembl	69_37n	-1	known	silent	c.2658	p.V886	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988	43	0	0	28	8	22.22	-	-	-	A	135965355	G	A	135965355	2	1	953	1	0	0	0	0	0	0	0	1	18317	1161	41	2		2	ZRANB3	2	135965355	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	89440332	135965355	107234018	10	76072										
ZNF502	0	genome.wustl.edu	37	chr3	44763241	44763241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tcgaaaacactcaaatcttaCgcaacatcagagaattcaca	4	11	4	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	3	44763241	44763241	C	T	SNP	ZNF502	ENST00000296091	human	ensembl	69_37n	1	known	missense	c.932	p.T311M	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653	45	0	0	12	5	29.41	-	-	-	T	44763241	C	T	44763241	3	4	953	1	0	0	0	0	1	0	0	0	18046	536	19	1	938	1	ZNF502	3	44763241	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		44763241	153259189	11	76073										
ADCY5	0	genome.wustl.edu	37	chr3	123046605	123046605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agccttggtgatgtggatgcGtctacaggggggcagggatc	18	7	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	3	123046605	123046605	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	69_37n	-1	known	missense	c.1807	p.R603C	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175	37	0	0	21	12	36.36	-	-	-	A	123046605	G	A	123046605	3	1	953	1	0	0	0	0	1	0	0	0	297	1159	40	1	2038	1	ADCY5	3	123046605	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	78283364	123046605	74975825	12	76074										
P2RY13	0	genome.wustl.edu	37	chr3	151046793	151046793	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gtgttcattgcttccagtgtCacctgttaccaataaacata	6	10	2	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	3	151046793	151046793	C	T	SNP	P2RY13	ENST00000325602	human	ensembl	69_37n	-1	known	silent	c.51	p.V17	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y13_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_UDPG_rcpt	-	no_errors	P2RY13	HGNC	ENSG00000181631	30	0	0	17	8	32	-	-	-	T	151046793	C	T	151046793	2	4	953	1	0	0	0	0	0	0	0	1	11423	813	29	2		2	P2RY13	3	151046793	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	28000188	151046793	46975637	13	76075										
RFC4	0	genome.wustl.edu	37	chr3	186510310	186510310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttttgacattttccttcttgGcaatgtctagtaatcgctgc	7	9	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	3	186510310	186510310	G	T	SNP	RFC4	ENST00000296273	human	ensembl	69_37n	-1	known	missense	c.644	p.A215D	1.000	NULL	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC4	HGNC	ENSG00000163918	51	0	0	31	4	11.43	-	-	-	T	186510310	G	T	186510310	3	4	953	1	0	0	0	0	1	0	0	0	13330	1203	42	4	467	4	RFC4	3	186510310	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	35463517	186510310	11512120	14	76076										
WDR17	0	genome.wustl.edu	37	chr4	177032726	177032726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cttcaaatttgtttttcaagGcaaacatgtcccaggtaagg	8	8	2	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	4	177032726	177032726	G	A	SNP	WDR17	ENST00000280190	human	ensembl	69_37n	1	known	missense	c.67	p.A23T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627	49	0	0	31	7	18.42	-	-	-	A	177032726	G	A	177032726	3	1	953	1	0	0	0	0	1	0	0	0	17374	1217	42	4	73	4	WDR17	4	177032726	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		177032726	14121550	15	76077										
NIPBL	0	genome.wustl.edu	37	chr5	37049264	37049264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agaaatgggtgatgtttcctCagggatgagtagttccatca	12	6	2	3			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	5	37049264	37049264	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	1	known	missense	c.6815	p.S2272L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	76	0	0	38	16	29.63	-	-	-	T	37049264	C	T	37049264	3	4	953	1	0	0	0	0	1	0	0	0	10500	838	29	2	6969	2	NIPBL	5	37049264	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		37049264	143865996	16	76078										
PSD2	0	genome.wustl.edu	37	chr5	139193879	139193879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gggtcagtgaagctgctcatCggctggcacgccgtctctac	13	13	3	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	5	139193879	139193879	C	T	SNP	PSD2	ENST00000274710	human	ensembl	69_37n	1	known	missense	c.946	p.R316W	0.706	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD2	HGNC	ENSG00000146005	66	0	0	52	15	22.39	-	-	-	T	139193879	C	T	139193879	3	4	953	1	0	0	0	0	1	0	0	0	12727	875	31	1	956	1	PSD2	5	139193879	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	102144615	139193879	41721381	17	76079										
IK	0	genome.wustl.edu	37	chr5	140027518	140027518	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cggagcgagatagtaaggctCaggccatccgttatttcttc	11	10	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	5	140027518	140027518	C	T	SNP	IK	ENST00000523672	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IK	HGNC	ENSG00000113141	51	0	0	23	4	14.81	-	-	-	T	140027518	C	T	140027518	1	4	953	0	1	0	0	0	0	0	0	0	7662	841	29	2		2	IK	5	140027518	RNA	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	833639	140027518	40887742	18	76080										
ATP10B	0	genome.wustl.edu	37	chr5	160047653	160047653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gcctggccaggtctgtggctGgggcctccaatgcctcctcc	13	16	1	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	5	160047653	160047653	G	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.2117	p.P706Q	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	58	0	0	24	13	35.14	-	-	-	T	160047653	G	T	160047653	3	4	953	1	0	0	0	0	1	0	0	0	1121	1348	47	4	2316	4	ATP10B	5	160047653	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	20020135	160047653	20867607	19	76081										
FOXC1	0	genome.wustl.edu	37	chr6	1610937	1610938	+	Frame_Shift_Ins	INS	-	-	TA													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ccctatagctacatcgcgctINScatcaccatggccatccaga							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	6	1610937	1610938	-	TA	INS	FOXC1	ENST00000380874	human	ensembl	69_37n	1	known	frame_shift_ins	c.257_258	p.I87fs	1.000:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598	81	0	0	47	9	16.07	-	-	-	TA	1610938	-	TA	1610937	7	5	953	1	0	1	1	0	0	0	0	0	6040	1551	54	0	259	0	FOXC1	6	1610937	Frame_Shift_Ins	INS	-	TCGA-LL-A5YL-01A-12D-A29N-09		1610937	169504130	20	76082	530	2								
FOXC1	0	genome.wustl.edu	37	chr6	1610938	1610938	+	Silent	SNP	C	C	A													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ccctatagctacatcgcgctCatcaccatggccatccagaa							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	6	1610938	1610938	C	A	SNP	FOXC1	ENST00000380874	human	ensembl	69_37n	1	known	silent	c.258	p.L86	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598	83	0	0	47	12	20.34	-	-	-	A	1610938	C	A	1610938	2	1	953	1	0	0	0	0	0	0	0	1	6040	813	29	2		2	FOXC1	6	1610938	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	1	1610938	169504129	21	76083	530	2								
DSP	0	genome.wustl.edu	37	chr6	7584585	7584585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	aactcatcgaaaagggccacGgtattcgcttattagaagca	9	9	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	6	7584585	7584585	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	1	known	missense	c.7090	p.G2364S	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	33	0	0	25	11	30.56	-	-	-	A	7584585	G	A	7584585	3	1	953	1	0	0	0	0	1	0	0	0	4816	1116	39	1	7184	1	DSP	6	7584585	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	5973647	7584585	163530482	22	76084										
INTS1	0	genome.wustl.edu	37	chr7	1526650	1526650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agcatcgtgcagcaggaactCgcacagacactgcacgggca	12	13	0	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	7	1526650	1526650	C	T	SNP	INTS1	ENST00000389470	human	ensembl	69_37n	-1	known	missense	c.3163	p.E1055K	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	11	0	0	8	4	33.33	-	-	-	T	1526650	C	T	1526650	3	4	953	1	0	0	0	0	1	0	0	0	7829	893	31	1	3950	1	INTS1	7	1526650	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		1526650	157612013	23	76085										
ZNF16	0	genome.wustl.edu	37	chr8	146156835	146156835	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctccgatgctgaataaggctGgagctctgactaaatgcttt	10	9	1	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	8	146156835	146156835	G	A	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	silent	c.1338	p.S446	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	51	0	0	21	12	36.36	-	-	-	A	146156835	G	A	146156835	2	1	953	1	0	0	0	0	0	0	0	1	17834	1335	47	4		4	ZNF16	8	146156835	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		146156835	207187	24	76086										
FPGS	0	genome.wustl.edu	37	chr9	130575807	130575807	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	actccgtgaggctgctgccaTccatgtgctagtcactggca	11	13	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	9	130575807	130575807	T	G	SNP	FPGS	ENST00000373247	human	ensembl	69_37n	1	known	missense	c.1688	p.I563S	0.997	tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877	44	0	0	38	19	33.33	-	-	-	G	130575807	T	G	130575807	3	3	953	1	0	0	0	0	1	0	0	0	6084	1435	50	5	1746	5	FPGS	9	130575807	Missense_Mutation	SNP	T	TCGA-LL-A5YL-01A-12D-A29N-09		130575807	10637624	25	76087										
IDI1	0	genome.wustl.edu	37	chr10	1094228	1094228	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tagtagacgcgggaacacatCatccaacccaagaaaaaggt	9	10	1	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	10	1094228	1094228	C	T	SNP	IDI1	ENST00000427898	human	ensembl	69_37n	-1	known	missense	c.31	p.D11N	0.011	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_stop_codon:bad_bp_length_for_coding_region	IDI1	HGNC	ENSG00000067064	49	0	0	32	12	27.27	-	-	-	T	1094228	C	T	1094228	3	4	953	1	0	0	0	0	1	0	0	0	7553	841	29	2		2	IDI1	10	1094228	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		1094228	134440519	26	76088										
ASB13	0	genome.wustl.edu	37	chr10	5683765	5683765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cgaagcacttggcgggagcgCtgctgctccacgtgtagtca	14	12	1	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	10	5683765	5683765	C	T	SNP	ASB13	ENST00000357700	human	ensembl	69_37n	-1	known	missense	c.677	p.S226N	0.998	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB13	HGNC	ENSG00000196372	40	0	0	19	14	42.42	-	-	-	T	5683765	C	T	5683765	3	4	953	1	0	0	0	0	1	0	0	0	1021	797	28	4	167	4	ASB13	10	5683765	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	4589537	5683765	129850982	27	76089										
KCNMA1	0	genome.wustl.edu	37	chr10	78761245	78761245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	caagggtgtccacgttaccaCgcacacggcctgacatgcat	10	14	0	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	10	78761245	78761245	C	T	SNP	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	missense	c.2198	p.R733H	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	34	0	0	25	7	21.88	-	-	-	T	78761245	C	T	78761245	3	4	953	1	0	0	0	0	1	0	0	0	8127	536	19	1	1720	1	KCNMA1	10	78761245	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	73077480	78761245	56773502	28	76090										
IFIT2	0	genome.wustl.edu	37	chr10	91066307	91066307	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cagaacgccattgaccctctGaggcaagccattcggctgaa	10	13	1	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	10	91066307	91066307	G	A	SNP	IFIT2	ENST00000371826	human	ensembl	69_37n	1	known	silent	c.594	p.L198	0.996	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922	62	0	0	34	11	24.44	-	-	-	A	91066307	G	A	91066307	2	1	953	1	0	0	0	0	0	0	0	1	7577	1277	45	2		2	IFIT2	10	91066307	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	12305062	91066307	44468440	29	76091										
BTRC	0	genome.wustl.edu	37	chr10	103190166	103190166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ggacagcatgccttcgctgcGatgcctgtataacccaggga	12	12	0	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	10	103190166	103190166	G	A	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	1	known	missense	c.113	p.R38Q	1.000	NULL	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	62	0	0	39	12	23.53	-	-	-	A	103190166	G	A	103190166	3	1	953	1	0	0	0	0	1	0	0	0	1578	1058	37	1	119	1	BTRC	10	103190166	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	12123859	103190166	32344581	30	76092										
PNPLA2	0	genome.wustl.edu	37	chr11	823557	823557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agatgtgcaagcagggatacCgggatggcctgcgctttctg	15	9	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	823557	823557	C	T	SNP	PNPLA2	ENST00000336615	human	ensembl	69_37n	1	known	missense	c.727	p.R243W	0.815	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA2	HGNC	ENSG00000177666	82	0	0	47	12	20.34	-	-	-	T	823557	C	T	823557	3	4	953	1	0	0	0	0	1	0	0	0	12239	643	23	1	745	1	PNPLA2	11	823557	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		823557	134182959	31	76093										
MRGPRX1	0	genome.wustl.edu	37	chr11	18955912	18955912	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cagagcaggacacacaccacCgctgacaggtgtgtggggcg	15	12	0	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	18955912	18955912	C	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	silent	c.420	p.A140	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	63	0	0	51	17	25	-	-	-	T	18955912	C	T	18955912	2	4	953	1	0	0	0	0	0	0	0	1	9838	639	23	1		1	MRGPRX1	11	18955912	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	18132355	18955912	116050604	32	76094										
ALX4	0	genome.wustl.edu	37	chr11	44297153	44297153	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctcaggtagctgctgtccatCcccacagtgtcagagtcagg	11	13	3	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	44297153	44297153	C	T	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	silent	c.522	p.G174	0.996	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	25	0	0	15	7	31.82	-	-	-	T	44297153	C	T	44297153	2	4	953	1	0	0	0	0	0	0	0	1	558	842	30	2		2	ALX4	11	44297153	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	25341241	44297153	90709363	33	76095										
MRPL11	0	genome.wustl.edu	37	chr11	66204715	66204715	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tacacatgcttcaaggtcacCaggcctgccacctctttccc	6	17	3	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	66204715	66204715	C	T	SNP	MRPL11	ENST00000310999	human	ensembl	69_37n	-1	known	silent	c.333	p.L111	1.000	pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11,tigrfam_Ribosomal_L11_bac-typ	-	no_errors	MRPL11	HGNC	ENSG00000174547	81	0	0	54	6	10	-	-	-	T	66204715	C	T	66204715	2	4	953	1	0	0	0	0	0	0	0	1	9848	581	21	4		4	MRPL11	11	66204715	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	21907562	66204715	68801801	34	76096										
RSF1	0	genome.wustl.edu	37	chr11	77378341	77378341	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gggcaggctgatttgcatctCcatgagcattgtcacaactc	10	11	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	77378341	77378341	C	G	SNP	RSF1	ENST00000308488	human	ensembl	69_37n	-1	known	missense	c.3947	p.G1316A	0.998	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649	83	0	0	49	18	26.87	-	-	-	G	77378341	C	G	77378341	3	3	953	1	0	0	0	0	1	0	0	0	13785	855	30	2	382	2	RSF1	11	77378341	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	11173626	77378341	57628175	35	76097										
NTM	0	genome.wustl.edu	37	chr11	132205064	132205064	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gagtgccacttccccacccgGgaaaggctgccgccaccacc	10	19	0	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	11	132205064	132205064	G	A	SNP	NTM	ENST00000474900	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.752	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	26	0	0	16	10	38.46	-	-	-	A	132205064	G	A	132205064	1	1	953	0	1	0	0	0	0	0	0	0	10772	1247	43	4		4	NTM	11	132205064	RNA	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	54826723	132205064	2801452	36	76098										
PDE3A	0	genome.wustl.edu	37	chr12	20806922	20806922	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ggattacccataagccccttCatggatcgttctgctcctca	7	14	3	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	20806922	20806922	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	1	known	silent	c.2967	p.F989	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	27	0	0	19	6	24	-	-	-	T	20806922	C	T	20806922	2	4	953	1	0	0	0	0	0	0	0	1	11710	825	29	2		2	PDE3A	12	20806922	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		20806922	113044973	37	76099										
NCKAP1L	0	genome.wustl.edu	37	chr12	54932707	54932707	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tgcagctgggccaggagactGacaagcttaaaaccagaaat	11	9	0	3			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	54932707	54932707	G	T	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	1	known	missense	c.3223	p.D1075Y	0.999	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	47	0	0	29	9	23.68	-	-	-	T	54932707	G	T	54932707	3	4	953	1	0	0	0	0	1	0	0	0	10294	1290	45	2	3341	2	NCKAP1L	12	54932707	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	34125785	54932707	78919188	38	76100										
ERBB3	0	genome.wustl.edu	37	chr12	56482607	56482607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tgatggatttgtgaactgcaCcaagatcctgggcaacctgg	12	9	0	3			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	56482607	56482607	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	1	known	missense	c.1064	p.T355I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	45	0	0	32	8	20	-	-	-	T	56482607	C	T	56482607	3	4	953	1	0	0	0	0	1	0	0	0	5245	507	18	4	1229	4	ERBB3	12	56482607	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	1549900	56482607	77369288	39	76101										
STAT6	0	genome.wustl.edu	37	chr12	57499083	57499083	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gcctggaacttggtctgagtCttcagtacctgggggggctg	16	9	3	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	57499083	57499083	C	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	silent	c.852	p.K284	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	47	0	0	34	15	30.61	-	-	-	T	57499083	C	T	57499083	2	4	953	1	0	0	0	0	0	0	0	1	15361	912	32	2		2	STAT6	12	57499083	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	1016476	57499083	76352812	40	76102										
ACSS3	0	genome.wustl.edu	37	chr12	81593142	81593142	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tcaaaacattatttgtggctGgagaacgatgtgatgtagag	12	4	1	3			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	81593142	81593142	G	A	SNP	ACSS3	ENST00000546664	human	ensembl	69_37n	1	known	nonsense	c.131	p.W44*	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACSS3	HGNC	ENSG00000111058	28	0	0	17	10	37.04	-	-	-	A	81593142	G	A	81593142	4	1	953	1	0	0	0	0	0	1	0	0	190	1349	47	4	1307	4	ACSS3	12	81593142	Nonsense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	24094059	81593142	52258753	41	76103										
APPL2	0	genome.wustl.edu	37	chr12	105611446	105611447	+	Frame_Shift_Ins	INS	-	-	T													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cataaataccaagttacctgINStttttcatatgccagcagtt							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	105611446	105611447	-	T	INS	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	frame_shift_ins	c.211_210	p.Q70fs	1.000:1.000	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	83	0	0	57	25	30.49	-	-	-	T	105611447	-	T	105611446	7	5	953	1	0	1	1	0	0	0	0	0	820	1386	48	0	1859	0	APPL2	12	105611446	Frame_Shift_Ins	INS	-	TCGA-LL-A5YL-01A-12D-A29N-09	24018304	105611446	28240449	42	76104										
WSCD2	0	genome.wustl.edu	37	chr12	108589947	108589947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctacggtggagcctggagccGagccctcaaggggagggttg	18	10	1	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	108589947	108589947	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.338	p.R113Q	0.998	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	36	0	0	19	9	32.14	-	-	-	A	108589947	G	A	108589947	3	1	953	1	0	0	0	0	1	0	0	0	17504	1058	37	1	340	1	WSCD2	12	108589947	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	2978501	108589947	25261948	43	76105										
C12orf65	0	genome.wustl.edu	37	chr12	123741391	123741391	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	aagatcagttgatcagaacaGaaagctagctcggaaaatcc	9	8	2	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	12	123741391	123741391	G	T	SNP	C12orf65	ENST00000253233	human	ensembl	69_37n	1	known	missense	c.314	p.R105I	1.000	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II	-	no_errors	C12orf65	HGNC	ENSG00000130921	35	0	0	22	3	12	-	-	-	T	123741391	G	T	123741391	3	4	953	1	0	0	0	0	1	0	0	0	1720	942	33	2	320	2	C12orf65	12	123741391	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	15151444	123741391	10110504	44	76106										
FAHD1	0	genome.wustl.edu	37	chr16	1877749	1877749	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttttccatcccctacatcatCagctatgtttctaagatcat	3	12	4	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	1877749	1877749	C	T	SNP	FAHD1	ENST00000382666	human	ensembl	69_37n	1	known	silent	c.519	p.I173	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD1	HGNC	ENSG00000180185	45	0	0	32	9	21.95	-	-	-	T	1877749	C	T	1877749	2	4	953	1	0	0	0	0	0	0	0	1	5412	816	29	2		2	FAHD1	16	1877749	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		1877749	88477004	45	76107										
ZC3H7A	0	genome.wustl.edu	37	chr16	11868220	11868220	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ctttcctccatttgccagcaCtgcagatggcagagcgctct	9	14	1	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	11868220	11868220	C	A	SNP	ZC3H7A	ENST00000355758	human	ensembl	69_37n	-1	known	missense	c.775	p.V259L	0.008	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299	58	0	0	28	44	61.11	-	-	-	A	11868220	C	A	11868220	3	1	953	1	0	0	0	0	1	0	0	0	17668	565	20	4	2200	4	ZC3H7A	16	11868220	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	9990471	11868220	78486533	46	76108										
SMG1	0	genome.wustl.edu	37	chr16	18874988	18874988	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttactttatatagttgaagtCagctttcaggttgagggaag	11	4	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	18874988	18874988	C	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.3679	p.D1227Y	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	130	0	0	61	80	56.74	-	-	-	A	18874988	C	A	18874988	3	1	953	1	0	0	0	0	1	0	0	0	14884	826	29	2	7462	2	SMG1	16	18874988	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	7006768	18874988	71479765	47	76109										
KCTD13	0	genome.wustl.edu	37	chr16	29937238	29937238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttcagcttcacgtatttgctGttcggggtcagcggcttgag	13	9	3	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	29937238	29937238	G	A	SNP	KCTD13	ENST00000308768	human	ensembl	69_37n	-1	known	silent	c.117	p.N39	0.997	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD13	HGNC	ENSG00000174943	51	0	0	36	4	10	-	-	-	A	29937238	G	A	29937238	2	1	953	1	0	0	0	0	0	0	0	1	8154	1368	48	4		4	KCTD13	16	29937238	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	11062250	29937238	60417515	48	76110										
ZNF689	0	genome.wustl.edu	37	chr16	30621185	30621185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gcccaggtgaccgtaggtctCccgcatcacgtcccggtaca	11	16	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	30621185	30621185	C	T	SNP	ZNF689	ENST00000287461	human	ensembl	69_37n	-1	known	missense	c.178	p.E60K	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853	115	0	0	103	16	13.45	-	-	-	T	30621185	C	T	30621185	3	4	953	1	0	0	0	0	1	0	0	0	18190	864	30	2	1336	2	ZNF689	16	30621185	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	683947	30621185	59733568	49	76111										
SLC12A3	0	genome.wustl.edu	37	chr16	56921918	56921918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agtcggctcacccggccacaGtggaagactacattggcatc	11	13	1	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	16	56921918	56921918	G	T	SNP	SLC12A3	ENST00000438926	human	ensembl	69_37n	1	known	missense	c.2260	p.V754L	0.109	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	50	0	0	23	4	14.81	-	-	-	T	56921918	G	T	56921918	3	4	953	1	0	0	0	0	1	0	0	0	14473	1029	36	4	2330	4	SLC12A3	16	56921918	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	26300733	56921918	33432835	50	76112										
RABEP1	0	genome.wustl.edu	37	chr17	5253832	5253832	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	atgaccagtttctggaatctCagcgtttactgatgagagac	10	8	2	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	17	5253832	5253832	C	T	SNP	RABEP1	ENST00000262477	human	ensembl	69_37n	1	known	nonsense	c.871	p.Q291*	1.000	NULL	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	47	0	0	34	13	27.66	-	-	-	T	5253832	C	T	5253832	4	4	953	1	0	0	0	0	0	1	0	0	13044	827	29	2	897	2	RABEP1	17	5253832	Nonsense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		5253832	75941378	51	76113										
USP43	0	genome.wustl.edu	37	chr17	9615433	9615433	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cccatcttcaccaacagcctCtgcaatcaggaaaagggtat	7	13	4	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	17	9615433	9615433	C	T	SNP	USP43	ENST00000285199	human	ensembl	69_37n	1	known	silent	c.2319	p.L773	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC	ENSG00000154914	49	0	0	33	5	13.16	-	-	-	T	9615433	C	T	9615433	2	4	953	1	0	0	0	0	0	0	0	1	17171	900	32	2		2	USP43	17	9615433	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	4361601	9615433	71579777	52	76114										
NCOR1	0	genome.wustl.edu	37	chr17	16062148	16062148	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	aggaggggacacgggcttctCaggctcaggaggtttagctg	17	8	2	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	17	16062148	16062148	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.658	p.E220K	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	22	0	0	21	8	27.59	-	-	-	T	16062148	C	T	16062148	3	4	953	1	0	0	0	0	1	0	0	0	10307	835	29	2	6828	2	NCOR1	17	16062148	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	6446715	16062148	65133062	53	76115										
PHF12	0	genome.wustl.edu	37	chr17	27238351	27238351	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	aggtctggatttcggacccaAggtgatgttcccttcttgat	11	9	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	17	27238351	27238351	A	C	SNP	PHF12	ENST00000579563	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PHF12	HGNC	ENSG00000109118	42	0	0	16	11	40.74	-	-	-	C	27238351	A	C	27238351	1	2	953	0	1	0	0	0	0	0	0	0	11897	87	3	5		5	PHF12	17	27238351	RNA	SNP	A	TCGA-LL-A5YL-01A-12D-A29N-09	11176203	27238351	53956859	54	76116										
NF1	0	genome.wustl.edu	37	chr17	29684041	29684041	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	taaagtttcagtgtctgaatCaaatgttctcttggatgaag	9	5	4	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	17	29684041	29684041	C	G	SNP	NF1	ENST00000358273	human	ensembl	69_37n	1	known	nonsense	c.7802	p.S2601*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	19	0	0	8	17	68	-	-	-	G	29684041	C	G	29684041	4	3	953	1	0	0	0	0	0	1	0	0	10428	838	29	2	8073	2	NF1	17	29684041	Nonsense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	2445690	29684041	51511169	55	76117										
TRMT1	0	genome.wustl.edu	37	chr19	13223538	13223538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ccatctcgtggcaggcccggCtcttgagggccatggccccg	14	16	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	19	13223538	13223538	C	A	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.851	p.S284I	1.000	pfam_tRNA_MeTrfase_TRM1,tigrfam_tRNA_MeTrfase_TRM1	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	81	0	0	46	23	33.33	-	-	-	A	13223538	C	A	13223538	3	1	953	1	0	0	0	0	1	0	0	0	16657	797	28	4	1172	4	TRMT1	19	13223538	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09		13223538	45905445	56	76118										
UPF1	0	genome.wustl.edu	37	chr19	18967087	18967087	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gtaccgggccttgaagcgcaCcgcagagagagagctgctga	15	11	0	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	19	18967087	18967087	C	A	SNP	UPF1	ENST00000262803	human	ensembl	69_37n	1	known	missense	c.1802	p.T601N	0.964	pfam_Helicase/UvrB_dom	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom	-	no_errors	UPF1	HGNC	ENSG00000005007	33	0	0	22	10	31.25	-	-	-	A	18967087	C	A	18967087	3	1	953	1	0	0	0	0	1	0	0	0	17100	507	18	4	1852	4	UPF1	19	18967087	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	5743549	18967087	40161896	57	76119										
HAUS5	0	genome.wustl.edu	37	chr19	36106161	36106161	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	agcaggcacgtcagcacactCaagacacccagcgtcgagct	10	15	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	19	36106161	36106161	C	G	SNP	HAUS5	ENST00000203166	human	ensembl	69_37n	1	known	missense	c.358	p.Q120E	0.001	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	32	0	0	22	5	18.52	-	-	-	G	36106161	C	G	36106161	3	3	953	1	0	0	0	0	1	0	0	0	7020	827	29	2	380	2	HAUS5	19	36106161	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	17139074	36106161	23022822	58	76120										
ZNF575	0	genome.wustl.edu	37	chr19	44038585	44038585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tgccagcaagatgctggagcGaggcgcggagtccgcggccg	18	12	0	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	19	44038585	44038585	G	A	SNP	ZNF575	ENST00000458714	human	ensembl	69_37n	1	known	missense	c.308	p.R103Q	0.913	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF575	HGNC	ENSG00000176472	79	0	0	39	15	27.78	-	-	-	A	44038585	G	A	44038585	3	1	953	1	0	0	0	0	1	0	0	0	18103	1058	37	1	13	1	ZNF575	19	44038585	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	7932424	44038585	15090398	59	76121										
BFSP1	0	genome.wustl.edu	37	chr20	17475250	17475250	+	Missense_Mutation	SNP	G	G	C													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gccaccccacctttagctgtGatggaggagacatagaatct							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	20	17475250	17475250	G	C	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	missense	c.1467	p.I489M	1.000	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	53	0	0	19	5	20.83	-	-	-	C	17475250	G	C	17475250	3	2	953	1	0	0	0	0	1	0	0	0	1420	1280	45	2	534	2	BFSP1	20	17475250	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		17475250	45550270	60	76122	531	2								
BFSP1	0	genome.wustl.edu	37	chr20	17475259	17475259	+	Silent	SNP	G	G	C													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cctttagctgtgatggaggaGacatagaatctagggtccac							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	20	17475259	17475259	G	C	SNP	BFSP1	ENST00000377873	human	ensembl	69_37n	-1	known	silent	c.1458	p.V486	0.646	NULL	pfam_F,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864	52	0	0	18	8	30.77	-	-	-	C	17475259	G	C	17475259	2	2	953	1	0	0	0	0	0	0	0	1	1420	929	33	2		2	BFSP1	20	17475259	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	9	17475259	45550261	61	76123	531	2								
SRC	0	genome.wustl.edu	37	chr20	36032817	36032817	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gagcgagcccctcggctctgGaggcaatcaagcagacatag	13	12	2	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	20	36032817	36032817	G	C	SNP	SRC	ENST00000477066	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.907	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	28	0	0	17	10	37.04	-	-	-	C	36032817	G	C	36032817	1	2	953	0	1	0	0	0	0	0	0	0	15225	1189	41	2		2	SRC	20	36032817	RNA	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	18557558	36032817	26992703	62	76124										
SAMSN1	0	genome.wustl.edu	37	chr21	15954518	15954518	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gacgtgtgtggcgaatacaaGaggagcagtggtcccagggt	17	7	0	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	21	15954518	15954518	G	C	SNP	SAMSN1	ENST00000285670	human	ensembl	69_37n	-1	novel	missense	c.200	p.S67C	0.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	75	0	0	38	14	26.92	-	-	-	C	15954518	G	C	15954518	3	2	953	1	0	0	0	0	1	0	0	0	13916	957	33	2		2	SAMSN1	21	15954518	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		15954518	32175377	63	76125										
COL6A2	0	genome.wustl.edu	37	chr21	47538573	47538573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gagggcccccgggagaaatcGgggccaagggaagcaaggtg	19	9	0	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	21	47538573	47538573	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	69_37n	1	known	missense	c.1162	p.G388R	0.998	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	101	0	0	56	20	26.32	-	-	-	A	47538573	G	A	47538573	3	1	953	1	0	0	0	0	1	0	0	0	3730	1116	39	1	1208	1	COL6A2	21	47538573	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	31584055	47538573	591322	64	76126										
CYTH4	0	genome.wustl.edu	37	chr22	37690715	37690715	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ccacagaagctgaaggatgaGattgcagatgtgtttgccca	12	8	0	4			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	22	37690715	37690715	G	A	SNP	CYTH4	ENST00000248901	human	ensembl	69_37n	1	known	silent	c.117	p.E39	0.999	NULL	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH4	HGNC	ENSG00000100055	42	0	0	30	11	26.83	-	-	-	A	37690715	G	A	37690715	2	1	953	1	0	0	0	0	0	0	0	1	4237	933	33	2		2	CYTH4	22	37690715	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		37690715	13613851	65	76127										
CLCN4	0	genome.wustl.edu	37	chrX	10176293	10176293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gtggggaaccctcttcatccGctgcaacatcgcctggtgca	11	14	2	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	10176293	10176293	G	A	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	1	known	missense	c.1052	p.R351H	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	72	0	0	47	6	11.32	-	-	-	A	10176293	G	A	10176293	3	1	953	1	0	0	0	0	1	0	0	0	3495	1087	38	1	1078	1	CLCN4	23	10176293	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09		10176293	145094267	66	76128										
DMD	0	genome.wustl.edu	37	chrX	32591707	32591707	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	ttaaagccagttgtgtgaatCttgttcactgcatcttcttt	7	8	4	1			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	32591707	32591707	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.1752	p.K584	0.997	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	63	0	0	36	12	25	-	-	-	T	32591707	C	T	32591707	2	4	953	1	0	0	0	0	0	0	0	1	4616	912	32	2		2	DMD	23	32591707	Silent	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	22415414	32591707	122678853	67	76129										
KIF4A	0	genome.wustl.edu	37	chrX	69596001	69596001	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gtcaaatgaaagaagatgctGagaagtttagacagtggaag	13	3	1	5			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	69596001	69596001	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.1975	p.E659K	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	37	0	0	32	6	15.38	-	-	-	A	69596001	G	A	69596001	3	1	953	1	0	0	0	0	1	0	0	0	8355	1291	45	2	2041	2	KIF4A	23	69596001	Missense_Mutation	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	37004294	69596001	85674559	68	76130										
FHL1	0	genome.wustl.edu	37	chrX	135279279	135279279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	tggtctctgagccatggcttCccatagacactcaggtaaaa	9	11	2	2			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	135279279	135279279	C	T	SNP	FHL1	ENST00000370683	human	ensembl	69_37n	1	known	missense	c.8	p.S3F	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	118	0	0	62	29	31.87	-	-	-	T	135279279	C	T	135279279	3	4	953	1	0	0	0	0	1	0	0	0	5924	855	30	2	75	2	FHL1	23	135279279	Missense_Mutation	SNP	C	TCGA-LL-A5YL-01A-12D-A29N-09	65683278	135279279	19991281	69	76131										
ZNF185	0	genome.wustl.edu	37	chrX	152087570	152087572	+	In_Frame_Del	DEL	GAG	GAG	-													0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	gctctacatcaggggacaccGaggaggaggaggaggaggag							TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	152087570	152087572	GAG	-	DEL	ZNF185	ENST00000535861	human	ensembl	69_37n	1	known	in_frame_del	c.475_477	p.E162in_frame_del	0.026:0.052:0.078	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394	52	0	0	31	5	13.89	-	-	-	-	152087572	GAG	-	152087570	7	5	953	1	0	1	0	1	0	0	0	0	17848	1059	37	0	516	0	ZNF185	23	152087570	In_Frame_Del	DEL	GAG	TCGA-LL-A5YL-01A-12D-A29N-09	16808291	152087570	3182990	70	76132										
FLNA	0	genome.wustl.edu	37	chrX	153587944	153587944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.333333333333333	23	2.93469654205669e-06	3.14259615384615	4.73666666666667	2.93467391304348	5.92539350149171e-05	0.00206965530159246	16	cgggaggggtcgcagccctcGgtcacgggcacctggaaggg	19	12	1	0			TCGA-LL-A5YL-01A-12D-A29N-09	TCGA-LL-A5YL-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	85de3ba8-3c04-4590-a620-c7a602f0b266	e606da36-cc93-4759-886c-1fe07d617705	X	153587944	153587944	G	A	SNP	FLNA	ENST00000369850	human	ensembl	69_37n	-1	known	silent	c.4050	p.T1350	0.005	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	46	0	0	31	14	31.11	-	-	-	A	153587944	G	A	153587944	2	1	953	1	0	0	0	0	0	0	0	1	5979	1103	39	1		1	FLNA	23	153587944	Silent	SNP	G	TCGA-LL-A5YL-01A-12D-A29N-09	1500374	153587944	1682616	71	76133										
SSR2	0	genome.wustl.edu	37	chr1	155989928	155989928	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	tgcttgagtgacagcaaataGagccaacaccacaaatgaca	8	10	0	4			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	1	155989928	155989928	G	C	SNP	SSR2	ENST00000295702	human	ensembl	69_37n	-1	known	missense	c.31	p.L11V	0.943	pfam_TRAP_beta,pirsf_TRAP_beta	pfam_TRAP_beta,pirsf_TRAP_beta	-	no_errors	SSR2	HGNC	ENSG00000163479	43	0	0	23	26	53.06	-	-	-	C	155989928	G	C	155989928	3	2	954	1	0	0	0	0	1	0	0	0	15282	933	33	2	540	2	SSR2	1	155989928	Missense_Mutation	SNP	G	TCGA-LL-A5YM-01A-11D-A28B-09		155989928	93260693	1	76134										
F13B	0	genome.wustl.edu	37	chr1	197024886	197024886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	accattttccttgttcgcaaCgagatatttttgatcccctc	5	12	0	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	1	197024886	197024886	C	T	SNP	F13B	ENST00000367412	human	ensembl	69_37n	-1	known	missense	c.1313	p.R438H	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278	27	0	0	29	20	40.82	-	-	-	T	197024886	C	T	197024886	3	4	954	1	0	0	0	0	1	0	0	0	5378	536	19	1	692	1	F13B	1	197024886	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	41034958	197024886	52225735	2	76135										
PPP1R15B	0	genome.wustl.edu	37	chr1	204379009	204379009	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	cttgccagacaaatccttctCtgaatcagaaggctcttcag	7	12	4	3			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	1	204379009	204379009	C	G	SNP	PPP1R15B	ENST00000367188	human	ensembl	69_37n	-1	known	missense	c.1531	p.E511Q	0.005	pfam_Prot_Pase1_reg-su15A/B_C	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615	32	0	0	38	12	24	-	-	-	G	204379009	C	G	204379009	3	3	954	1	0	0	0	0	1	0	0	0	12441	922	32	2	618	2	PPP1R15B	1	204379009	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	7354123	204379009	44871612	3	76136										
LRP1B	0	genome.wustl.edu	37	chr2	141526899	141526899	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	ttcatgaacagagtacataaGaaatgattctatacctaaat	5	6	2	4			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	2	141526899	141526899	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.5641	p.L1881F	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	70	0	0	42	27	39.13	-	-	-	A	141526899	G	A	141526899	3	1	954	1	0	0	0	0	1	0	0	0	9021	942	33	2	8386	2	LRP1B	2	141526899	Missense_Mutation	SNP	G	TCGA-LL-A5YM-01A-11D-A28B-09		141526899	101672474	4	76137										
IFIH1	0	genome.wustl.edu	37	chr2	163130442	163130442	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gcgaaatttactaatgacttCtttttgttcattctgtagaa	6	6	3	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	2	163130442	163130442	C	T	SNP	IFIH1	ENST00000263642	human	ensembl	69_37n	-1	known	missense	c.2317	p.E773K	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_DEATH-like,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267	74	0	0	33	20	37.74	-	-	-	T	163130442	C	T	163130442	3	4	954	1	0	0	0	0	1	0	0	0	7574	922	32	2	780	2	IFIH1	2	163130442	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	21603543	163130442	80068931	5	76138										
TTN	0	genome.wustl.edu	37	chr2	179614554	179614554	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	aggactccattttgaaaccaTgttacaactggctggggctc	10	10	0	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	2	179614554	179614554	T	A	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	silent	c.12573	p.T4191	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	42	0	0	36	9	20	-	-	-	A	179614554	T	A	179614554	2	1	954	1	0	0	0	0	0	0	0	1	16832	1451	51	5		5	TTN	2	179614554	Silent	SNP	T	TCGA-LL-A5YM-01A-11D-A28B-09	16484112	179614554	63584819	6	76139										
BCL6	0	genome.wustl.edu	37	chr3	187446261	187446261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gggactgagagccgcaggacGtgcacttcggggggtgcatg	19	9	0	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	3	187446261	187446261	G	A	SNP	BCL6	ENST00000232014	human	ensembl	69_37n	-1	known	missense	c.1427	p.T476M	0.825	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916	35	0	0	15	9	37.5	-	-	-	A	187446261	G	A	187446261	3	1	954	1	0	0	0	0	1	0	0	0	1380	1145	40	1	713	1	BCL6	3	187446261	Missense_Mutation	SNP	G	TCGA-LL-A5YM-01A-11D-A28B-09		187446261	10576169	7	76140										
ZNF141	0	genome.wustl.edu	37	chr4	376653	376653	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	tagtagctgtgggatagttaCacaagacacatctacaagaa	9	7	1	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	4	376653	376653	C	T	SNP	ZNF141	ENST00000579770	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	ZNF141	HGNC	ENSG00000131127	8	0	0	5	4	44.44	-	-	-	T	376653	C	T	376653	1	4	954	0	1	0	0	0	0	0	0	0	17826	493	17	4		4	ZNF141	4	376653	RNA	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09		376653	190777623	8	76141										
MRPS28	0	genome.wustl.edu	37	chr8	80831317	80831317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gttgtatctgttgttgctccCaggaacctagacgtaagttc	10	9	1	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	8	80831317	80831317	C	G	SNP	MRPS28	ENST00000519386	human	ensembl	69_37n	-1	putative	missense	c.328	p.G110R	1.000	pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold-like	pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPS28	HGNC	ENSG00000147586	81	0	0	45	16	25.81	-	-	-	G	80831317	C	G	80831317	3	3	954	1	0	0	0	0	1	0	0	0	9911	581	21	4	105	4	MRPS28	8	80831317	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09		80831317	65532705	9	76142										
RUNX1T1	0	genome.wustl.edu	37	chr8	93003894	93003894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	tctgtttctgtccctgaggtCcctgtggctggggtgtcgat	14	10	2	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	8	93003894	93003894	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	missense	c.997	p.D333N	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	218	0	0	179	32	15.17	-	-	-	T	93003894	C	T	93003894	3	4	954	1	0	0	0	0	1	0	0	0	13833	855	30	2	874	2	RUNX1T1	8	93003894	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	12172577	93003894	53360128	10	76143			1	122		2	2	28	C		2.180437e-05
RUNX1T1	0	genome.wustl.edu	37	chr8	93003921	93003921	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gctggggtgtcgataggagtCcctgtagtggtgggcaatgg	19	6	0	0			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	8	93003921	93003921	C	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	69_37n	-1	known	missense	c.970	p.D324Y	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	195	0	0	171	30	14.93	-	-	-	A	93003921	C	A	93003921	3	1	954	1	0	0	0	0	1	0	0	0	13833	855	30	2	901	2	RUNX1T1	8	93003921	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	27	93003921	53360101	11	76144			1	122		2	2	28	C		2.180437e-05
CCAR1	0	genome.wustl.edu	37	chr10	70509314	70509317	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	agagaaagacgtagatcgagAgaaagatcacctcagaggaa							TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	AGAA	AGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	10	70509314	70509317	AGAA	-	DEL	CCAR1	ENST00000265872	human	ensembl	69_37n	1	known	frame_shift_del	c.990_993	p.E331fs	1.000:1.000:1.000:1.000	NULL	pfam_SAP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_SAP_DNA-bd,pfscan_SAP_DNA-bd	-	no_errors	CCAR1	HGNC	ENSG00000060339	40	0	0	9	8	47.06	-	-	-	-	70509317	AGAA	-	70509314	7	5	954	1	0	1	0	1	0	0	0	0	2755	301	11	0	1024	0	CCAR1	10	70509314	Frame_Shift_Del	DEL	AGAA	TCGA-LL-A5YM-01A-11D-A28B-09		70509314	65025433	12	76145										
PPP2R5B	0	genome.wustl.edu	37	chr11	64693374	64693374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	ttccgctatcagagcaaccaGcaagagctcacaccgctgcc	8	16	2	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	11	64693374	64693374	G	A	SNP	PPP2R5B	ENST00000164133	human	ensembl	69_37n	1	known	silent	c.168	p.Q56	1.000	pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	29	0	0	3	19	86.36	-	-	-	A	64693374	G	A	64693374	2	1	954	1	0	0	0	0	0	0	0	1	12470	962	34	4		4	PPP2R5B	11	64693374	Silent	SNP	G	TCGA-LL-A5YM-01A-11D-A28B-09		64693374	70313142	13	76146										
CNPY2	0	genome.wustl.edu	37	chr12	56708704	56708704	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	tgaatggtcttcttggggtcCacctgggcaatttcccattc	10	11	2	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	12	56708704	56708704	C	A	SNP	CNPY2	ENST00000553191	human	ensembl	69_37n	-1	known	nonsense	c.49	p.G17*	0.998	pfam_DUF3456	pfam_DUF3456	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNPY2	HGNC	ENSG00000257727	52	0	0	30	27	47.37	-	-	-	A	56708704	C	A	56708704	4	1	954	1	0	0	0	0	0	1	0	0	3658	581	21	4	429	4	CNPY2	12	56708704	Nonsense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09		56708704	77143191	14	76147										
ACAD10	0	genome.wustl.edu	37	chr12	112174710	112174710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	caggatgtactgtctccaaaTggggctccctcccactgaga	10	13	1	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	12	112174710	112174710	T	C	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	1	known	missense	c.1709	p.M570T	0.903	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	75	0	0	31	16	34.04	-	-	-	C	112174710	T	C	112174710	3	2	954	1	0	0	0	0	1	0	0	0	108	1464	51	5	1755	5	ACAD10	12	112174710	Missense_Mutation	SNP	T	TCGA-LL-A5YM-01A-11D-A28B-09	55466006	112174710	21677185	15	76148										
DDX51	0	genome.wustl.edu	37	chr12	132625824	132625824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gcgtgctgctggatacctggCggctgtcacagcctgggcct	15	13	1	0			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	12	132625824	132625824	C	T	SNP	DDX51	ENST00000397333	human	ensembl	69_37n	-1	known	missense	c.1246	p.A416T	0.999	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163	59	0	0	41	21	33.87	-	-	-	T	132625824	C	T	132625824	3	4	954	1	0	0	0	0	1	0	0	0	4400	768	27	1	786	1	DDX51	12	132625824	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	20451114	132625824	1226071	16	76149										
SSTR1	0	genome.wustl.edu	37	chr14	38679347	38679347	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	ctcatcattgctaagatgcgCatggtggccctcaaggccgg	12	12	3	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	14	38679347	38679347	C	T	SNP	SSTR1	ENST00000267377	human	ensembl	69_37n	1	known	silent	c.753	p.R251	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_1,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor	-	no_errors	SSTR1	HGNC	ENSG00000139874	45	0	0	34	12	25.53	-	-	-	T	38679347	C	T	38679347	2	4	954	1	0	0	0	0	0	0	0	1	15288	697	25	4		4	SSTR1	14	38679347	Silent	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09		38679347	68670193	17	76150										
CHTF18	0	genome.wustl.edu	37	chr16	847930	847930	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	ttccgcttcaacgagggtgtCtccaacgccgtgcggcgcag	13	14	2	0			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	16	847930	847930	C	T	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	1	known	silent	c.3510	p.V1170	0.993	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	37	0	0	28	7	20	-	-	-	T	847930	C	T	847930	2	4	954	1	0	0	0	0	0	0	0	1	3443	900	32	2		2	CHTF18	16	847930	Silent	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09		847930	89506823	18	76151										
HAUS8	0	genome.wustl.edu	37	chr19	17163685	17163686	+	Frame_Shift_Ins	INS	-	-	A													0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	cgtccttgagttcgctcagtINSaagtccagcacctgcacatt							TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	19	17163685	17163686	-	A	INS	HAUS8	ENST00000253669	human	ensembl	69_37n	-1	known	frame_shift_ins	c.879_878	p.L293fs	0.005:0.005	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351	48	0	0	29	19	39.58	-	-	-	A	17163686	-	A	17163685	7	5	954	1	0	1	1	0	0	0	0	0	7023	1635	57	0	361	0	HAUS8	19	17163685	Frame_Shift_Ins	INS	-	TCGA-LL-A5YM-01A-11D-A28B-09		17163685	41965298	19	76152										
SULT2B1	0	genome.wustl.edu	37	chr19	49094928	49094928	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	ctctatcattactccaagatCgccgggcagttaaaggaccc	8	13	2	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	19	49094928	49094928	C	T	SNP	SULT2B1	ENST00000201586	human	ensembl	69_37n	1	known	silent	c.486	p.I162	0.055	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT2B1	HGNC	ENSG00000088002	66	0	0	24	25	50	-	-	-	T	49094928	C	T	49094928	2	4	954	1	0	0	0	0	0	0	0	1	15473	874	31	1		1	SULT2B1	19	49094928	Silent	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	31931243	49094928	10034055	20	76153										
ASPDH	0	genome.wustl.edu	37	chr19	51017028	51017028	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	caaggatggtcagggactcaCcgaggcggccatagcccacc	13	14	2	0			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	19	51017028	51017028	C	T	SNP	ASPDH	ENST00000389208	human	ensembl	69_37n	-1	known	splice_site	c.52+1	e1+1	0.737	-	-	-	no_errors	ASPDH	HGNC	ENSG00000204653	144	0	0	59	56	48.7	-	-	-	T	51017028	C	T	51017028	5	4	954	1	0	0	0	0	0	0	1	0	1055	521	18	4	826	4	ASPDH	19	51017028	Splice_Site	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	1922100	51017028	8111955	21	76154										
NLRP11	0	genome.wustl.edu	37	chr19	56320768	56320768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gggtgctcagaaacagtcctCctgcagccagcaaacacaga	10	13	1	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	19	56320768	56320768	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	69_37n	-1	known	missense	c.1208	p.G403E	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	32	0	0	31	11	26.19	-	-	-	T	56320768	C	T	56320768	3	4	954	1	0	0	0	0	1	0	0	0	10545	855	30	2	1925	2	NLRP11	19	56320768	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	5303740	56320768	2808215	22	76155										
ERCC6L	0	genome.wustl.edu	37	chrX	71427063	71427063	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	tgctggaataagttaattctTttttctcgttccaaaagatg	7	6	2	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	X	71427063	71427063	T	C	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	silent	c.1554	p.K518	0.993	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	60	0	0	43	9	17.31	-	-	-	C	71427063	T	C	71427063	2	2	954	1	0	0	0	0	0	0	0	1	5255	1838	64	5		5	ERCC6L	23	71427063	Silent	SNP	T	TCGA-LL-A5YM-01A-11D-A28B-09		71427063	83843497	23	76156										
TMEM164	0	genome.wustl.edu	37	chrX	109246780	109246780	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gttggtggccactggagaagCgcggggggctcccccagaca	17	12	0	2			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	X	109246780	109246780	C	A	SNP	TMEM164	ENST00000497754	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	TMEM164	HGNC	ENSG00000157600	66	0	0	55	13	18.84	-	-	-	A	109246780	C	A	109246780	1	1	954	0	1	0	0	0	0	0	0	0	16174	783	27	3		3	TMEM164	23	109246780	RNA	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	37819717	109246780	46023780	24	76157										
HCFC1	0	genome.wustl.edu	37	chrX	153220825	153220825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.2	5	0.224255261890768	2.23076923076923	5.05641025641026	1.62527472527473	1	1	0	gttggagcacaccaaggtgaCagtgccaggctgcacatcac	12	12	1	1			TCGA-LL-A5YM-01A-11D-A28B-09	TCGA-LL-A5YM-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad4322ee-f3f7-42de-8510-6b7e64a91662	2453a8b7-bf16-47c9-9452-cecd1c18f2d3	X	153220825	153220825	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.3025	p.V1009I	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	92	0	0	46	39	45.88	-	-	-	T	153220825	C	T	153220825	3	4	954	1	0	0	0	0	1	0	0	0	7042	478	17	4	3122	4	HCFC1	23	153220825	Missense_Mutation	SNP	C	TCGA-LL-A5YM-01A-11D-A28B-09	43974045	153220825	2049735	25	76158										
KCNQ4	0	genome.wustl.edu	37	chr1	41303380	41303380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ggcccggggacaggaaggccCgggagaagggcgacaagggg	22	9	0	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	1	41303380	41303380	C	T	SNP	KCNQ4	ENST00000347132	human	ensembl	69_37n	1	known	missense	c.1789	p.R597W	0.482	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013	47	0	0	34	4	10.26	-	-	-	T	41303380	C	T	41303380	3	4	955	1	0	0	0	0	1	0	0	0	8139	643	23	1	1839	1	KCNQ4	1	41303380	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		41303380	207947241	1	76159										
COL24A1	0	genome.wustl.edu	37	chr1	86620237	86620237	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	caatccattctatttggtttCtctgcctccctccccccaaa	3	17	2	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	1	86620237	86620237	C	T	SNP	COL24A1	ENST00000485434	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.714	-	-	-	no_errors	COL24A1	HGNC	ENSG00000171502	63	0	0	44	12	21.43	-	-	-	T	86620237	C	T	86620237	1	4	955	0	1	0	0	0	0	0	0	0	3713	928	32	2		2	COL24A1	1	86620237	RNA	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09	45316857	86620237	162630384	2	76160										
MYBPH	0	genome.wustl.edu	37	chr1	203140613	203140613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ctgggccgagcgaatgaagaGgatggagtcctggtccccgg	17	10	0	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	1	203140613	203140613	G	A	SNP	MYBPH	ENST00000255416	human	ensembl	69_37n	-1	known	missense	c.691	p.L231F	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPH	HGNC	ENSG00000133055	114	0	0	56	13	18.84	-	-	-	A	203140613	G	A	203140613	3	1	955	1	0	0	0	0	1	0	0	0	10086	1000	35	4	766	4	MYBPH	1	203140613	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09	116520376	203140613	46110008	3	76161										
RGPD3	0	genome.wustl.edu	37	chr2	107069189	107069189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	cacacgaattccactctaaaCttgaacgcaaagctatgttc	5	12	1	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	2	107069189	107069189	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.599	p.S200N	0.985	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	15	0	0	30	19	38.78	-	-	-	T	107069189	C	T	107069189	3	4	955	1	0	0	0	0	1	0	0	0	13370	565	20	4	4753	4	RGPD3	2	107069189	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		107069189	136130184	4	76162										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	23	0	0	14	6	30	-	-	-	G	178952085	A	G	178952085	3	3	955	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-LL-A5YN-01A-11D-A28B-09		178952085	19070345	5	76163										
TLR10	0	genome.wustl.edu	37	chr4	38777097	38777097	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gtctgcgggaacctttcttaGagacatgttggagcagttgg	14	7	2	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	4	38777097	38777097	G	A	SNP	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	silent	c.115	p.L39	0.377	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	55	0	0	51	14	21.54	-	-	-	A	38777097	G	A	38777097	2	1	955	1	0	0	0	0	0	0	0	1	16045	933	33	2		2	TLR10	4	38777097	Silent	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09		38777097	152377179	6	76164										
ATP8A1	0	genome.wustl.edu	37	chr4	42626614	42626614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	taaataagagaggaaccagtGttgtataacgacctgttggt	11	5	0	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	4	42626614	42626614	G	A	SNP	ATP8A1	ENST00000381668	human	ensembl	69_37n	-1	known	missense	c.302	p.T101I	1.000	tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A1	HGNC	ENSG00000124406	97	0	0	61	18	22.78	-	-	-	A	42626614	G	A	42626614	3	1	955	1	0	0	0	0	1	0	0	0	1196	1377	48	4	3406	4	ATP8A1	4	42626614	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09	3849517	42626614	148527662	7	76165										
PPP1R10	0	genome.wustl.edu	37	chr6	30570058	30570058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	tcctccacccccacccatgcTaccaccagggccttcatggg	7	20	1	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	6	30570058	30570058	T	G	SNP	PPP1R10	ENST00000376511	human	ensembl	69_37n	-1	known	missense	c.2368	p.S790R	0.340	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569	67	0	0	60	17	22.08	-	-	-	G	30570058	T	G	30570058	3	3	955	1	0	0	0	0	1	0	0	0	12429	1522	53	5	462	5	PPP1R10	6	30570058	Missense_Mutation	SNP	T	TCGA-LL-A5YN-01A-11D-A28B-09		30570058	140545009	8	76166										
TBX18	0	genome.wustl.edu	37	chr6	85453997	85453997	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	acctgttgcgcccggagtctCggaagcctttagcaaatgga	12	11	1	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	6	85453997	85453997	C	A	SNP	TBX18	ENST00000369663	human	ensembl	69_37n	-1	known	missense	c.986	p.R329L	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	36	0	0	16	5	23.81	-	-	-	A	85453997	C	A	85453997	3	1	955	1	0	0	0	0	1	0	0	0	15748	884	31	3	849	3	TBX18	6	85453997	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09	54883939	85453997	85661070	9	76167										
ANLN	0	genome.wustl.edu	37	chr7	36447355	36447355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	tgtttcagaaagctacttctCcagtgaaatctactacatct	5	10	4	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	7	36447355	36447355	C	T	SNP	ANLN	ENST00000265748	human	ensembl	69_37n	1	known	missense	c.886	p.P296S	0.991	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426	74	0	0	69	8	10.39	-	-	-	T	36447355	C	T	36447355	3	4	955	1	0	0	0	0	1	0	0	0	693	855	30	2	904	2	ANLN	7	36447355	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		36447355	122691308	10	76168										
CCDC136	0	genome.wustl.edu	37	chr7	128446755	128446755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	accataggagttactgtgccGgctgcagaagctgcacctcc	11	13	0	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	7	128446755	128446755	G	A	SNP	CCDC136	ENST00000297788	human	ensembl	69_37n	1	known	missense	c.1262	p.R421Q	0.927	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596	22	0	0	21	4	16	-	-	-	A	128446755	G	A	128446755	3	1	955	1	0	0	0	0	1	0	0	0	2795	1116	39	1	1296	1	CCDC136	7	128446755	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09	91999400	128446755	30691908	11	76169										
OR13A1	0	genome.wustl.edu	37	chr10	45799522	45799522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	cgtgaggaaatagagctgggCcatgcagcccccgtaggaga	15	10	0	3			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	10	45799522	45799522	C	T	SNP	OR13A1	ENST00000374401	human	ensembl	69_37n	-1	known	missense	c.349	p.A117T	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574	36	0	0	23	4	14.81	-	-	-	T	45799522	C	T	45799522	3	4	955	1	0	0	0	0	1	0	0	0	11006	739	26	4	641	4	OR13A1	10	45799522	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		45799522	89735225	12	76170										
RCN1	0	genome.wustl.edu	37	chr11	32112870	32112870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gcgcgtggtgcggcccgactCggagctgggcgagcggcccc	19	15	0	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	11	32112870	32112870	C	T	SNP	RCN1	ENST00000054950	human	ensembl	69_37n	1	known	missense	c.128	p.S43L	0.999	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	63	0	0	32	48	60	-	-	-	T	32112870	C	T	32112870	3	4	955	1	0	0	0	0	1	0	0	0	13262	893	31	1	130	1	RCN1	11	32112870	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		32112870	102893646	13	76171										
ATM	0	genome.wustl.edu	37	chr11	108124625	108124626	+	Frame_Shift_Ins	INS	-	-	T													0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	caacttttgacaagatggacINStttttaaccattgtgagaga							TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	11	108124625	108124626	-	T	INS	ATM	ENST00000278616	human	ensembl	69_37n	1	known	frame_shift_ins	c.1983_1984	p.L662fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	46	0	0	38	6	13.64	-	-	-	T	108124626	-	T	108124625	7	5	955	1	0	1	1	0	0	0	0	0	1113	564	20	0	2029	0	ATM	11	108124625	Frame_Shift_Ins	INS	-	TCGA-LL-A5YN-01A-11D-A28B-09	76011755	108124625	26881891	14	76172										
PZP	0	genome.wustl.edu	37	chr12	9304857	9304857	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gggaataaaaccagataccaTctttacatcaacaatcacca	4	11	3	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	12	9304857	9304857	T	A	SNP	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	missense	c.4171	p.M1391L	1.000	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	65	0	0	39	15	27.78	-	-	-	A	9304857	T	A	9304857	3	1	955	1	0	0	0	0	1	0	0	0	12952	1435	50	5	297	5	PZP	12	9304857	Missense_Mutation	SNP	T	TCGA-LL-A5YN-01A-11D-A28B-09		9304857	124547038	15	76173										
CACNB3	0	genome.wustl.edu	37	chr12	49221505	49221505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	cgtagctcccgccacctggaGgaggactatgcagatgccta	12	13	0	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	12	49221505	49221505	G	T	SNP	CACNB3	ENST00000301050	human	ensembl	69_37n	1	known	missense	c.1278	p.E426D	1.000	NULL	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	51	0	0	14	3	17.65	-	-	-	T	49221505	G	T	49221505	3	4	955	1	0	0	0	0	1	0	0	0	2579	991	35	4	1328	4	CACNB3	12	49221505	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09	39916648	49221505	84630390	16	76174										
TPTE2	0	genome.wustl.edu	37	chr13	20048214	20048214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gaccaggaaaactccaaataTtctaaaataaataaataaat	3	6	1	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	13	20048214	20048214	T	G	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.232	p.I78L	0.856	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	37	0	0	69	9	11.54	-	-	-	G	20048214	T	G	20048214	3	3	955	1	0	0	0	0	1	0	0	0	16527	1507	52	5	1396	5	TPTE2	13	20048214	Missense_Mutation	SNP	T	TCGA-LL-A5YN-01A-11D-A28B-09		20048214	95121664	17	76175										
OR4K5	0	genome.wustl.edu	37	chr14	20388956	20388956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ccctatgtactttctcttggGaaacctttcctttgttgaca	6	11	1	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	14	20388956	20388956	G	A	SNP	OR4K5	ENST00000315915	human	ensembl	69_37n	1	known	missense	c.191	p.G64E	0.010	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4K5	HGNC	ENSG00000176281	50	0	0	66	14	17.5	-	-	-	A	20388956	G	A	20388956	3	1	955	1	0	0	0	0	1	0	0	0	11146	1174	41	2	193	2	OR4K5	14	20388956	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09		20388956	86960584	18	76176										
HEATR5A	0	genome.wustl.edu	37	chr14	31858176	31858176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	tagtaattccagaacttcctCcaaagatactctgcgaatgc	6	11	1	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	14	31858176	31858176	C	T	SNP	HEATR5A	ENST00000389961	human	ensembl	69_37n	-1	known	missense	c.790	p.E264K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493	58	0	0	48	9	15.79	-	-	-	T	31858176	C	T	31858176	3	4	955	1	0	0	0	0	1	0	0	0	7082	870	30	2		2	HEATR5A	14	31858176	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09	11469220	31858176	75491364	19	76177										
AARS	0	genome.wustl.edu	37	chr16	70298894	70298894	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ggagtccaaatggtaattgtActttggggaatcatctgtga	12	5	2	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	16	70298894	70298894	A	G	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1459	p.Y487H	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-synth_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	66	0	0	28	14	33.33	-	-	-	G	70298894	A	G	70298894	3	3	955	1	0	0	0	0	1	0	0	0	19	391	14	5	1491	5	AARS	16	70298894	Missense_Mutation	SNP	A	TCGA-LL-A5YN-01A-11D-A28B-09		70298894	20055859	20	76178										
MC1R	0	genome.wustl.edu	37	chr16	89981311	89981311	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gcacatttgtgtgtgtgtgcCtgtgtgtgtgtgcctgtgtg	16	6	0	0			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	16	89981311	89981311	C	G	SNP	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	84	0	0	31	7	18.42	-	-	-	G	89981311	C	G	89981311	1	3	955	0	1	0	0	0	0	0	0	0	9434	696	24	4		4	MC1R	16	89981311	RNA	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09	19682417	89981311	373442	21	76179										
C19orf21	0	genome.wustl.edu	37	chr19	758171	758171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ccccagatgcccgtgcggccGacccagctccagaagtgagg	13	16	0	3			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	19	758171	758171	G	A	SNP	C19orf21	ENST00000215582	human	ensembl	69_37n	1	known	missense	c.1225	p.D409N	0.000	NULL	NULL	-	no_errors	C19orf21	HGNC	ENSG00000099812	57	0	0	28	4	12.5	-	-	-	A	758171	G	A	758171	3	1	955	1	0	0	0	0	1	0	0	0	1931	1058	37	1	1227	1	C19orf21	19	758171	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09		758171	58370812	22	76180										
CRLS1	0	genome.wustl.edu	37	chr20	5996107	5996107	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	acttatcagtatcttatatgTtagcttgacctatgcagatc	6	8	2	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	20	5996107	5996107	T	C	SNP	CRLS1	ENST00000378863	human	ensembl	69_37n	1	known	missense	c.545	p.V182A	1.000	pfam_CDP-OH_P_trans	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766	48	0	0	39	8	17.02	-	-	-	C	5996107	T	C	5996107	3	2	955	1	0	0	0	0	1	0	0	0	3919	1725	60	5	568	5	CRLS1	20	5996107	Missense_Mutation	SNP	T	TCGA-LL-A5YN-01A-11D-A28B-09		5996107	57029413	23	76181										
RWDD2B	0	genome.wustl.edu	37	chr21	30391545	30391545	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gactcaccttgagccgtggcCccctcactgctgtaacccgg	10	17	2	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	21	30391545	30391545	C	G	SNP	RWDD2B	ENST00000493196	human	ensembl	69_37n	-1	known	silent	c.54	p.G18	0.000	NULL	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253	83	0	0	28	4	12.5	-	-	-	G	30391545	C	G	30391545	2	3	955	1	0	0	0	0	0	0	0	1	13842	610	22	4		4	RWDD2B	21	30391545	Silent	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		30391545	17738350	24	76182										
RTN4R	0	genome.wustl.edu	37	chr22	20230090	20230090	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	gctcgggcacgctggagatgCggttgccgtgcaggaagagg	19	9	0	2			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	22	20230090	20230090	C	A	SNP	RTN4R	ENST00000043402	human	ensembl	69_37n	-1	known	missense	c.566	p.R189L	0.852	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608	171	0	0	56	20	26.32	-	-	-	A	20230090	C	A	20230090	3	1	955	1	0	0	0	0	1	0	0	0	13816	768	27	3	859	3	RTN4R	22	20230090	Missense_Mutation	SNP	C	TCGA-LL-A5YN-01A-11D-A28B-09		20230090	31074476	25	76183										
HUWE1	0	genome.wustl.edu	37	chrX	53631552	53631552	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0769230769230769	2	0.838684625201534	1.2337962962963	0	1.51851851851852	0.333333333333333	0.930327025915261	0	ccctaaggttatttttacctGtccaactctgcaagtatgaa	6	10	1	1			TCGA-LL-A5YN-01A-11D-A28B-09	TCGA-LL-A5YN-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cade5be6-403b-410a-880a-194025f032e7	f064055b-243c-470c-81bf-1213874bc776	X	53631552	53631552	G	C	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.2740	p.Q914E	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	86	0	0	68	12	15	-	-	-	C	53631552	G	C	53631552	3	2	955	1	0	0	0	0	1	0	0	0	7515	1386	48	4	10620	4	HUWE1	23	53631552	Missense_Mutation	SNP	G	TCGA-LL-A5YN-01A-11D-A28B-09		53631552	101639008	26	76184										
RBBP4	0	genome.wustl.edu	37	chr1	33123070	33123070	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	attcatcgacttgtcctgggGacacacacatcggatgaaca	9	11	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	33123070	33123070	G	T	SNP	RBBP4	ENST00000373493	human	ensembl	69_37n	1	known	silent	c.207	p.G69	0.921	pfam_Histone-bd_RBBP4	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521	45	0	0	38	7	15.56	-	-	-	T	33123070	G	T	33123070	2	4	956	1	0	0	0	0	0	0	0	1	13184	1161	41	2		2	RBBP4	1	33123070	Silent	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		33123070	216127551	1	76185										
HPCAL4	0	genome.wustl.edu	37	chr1	40149691	40149691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	caaaggcccagttgagcttcTgctcgaagctgccgcgggag	14	12	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	40149691	40149691	T	C	SNP	HPCAL4	ENST00000372844	human	ensembl	69_37n	-1	known	missense	c.296	p.Q99R	1.000	pfscan_EF_HAND_2,prints_Recoverin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983	76	0	0	29	4	12.12	-	-	-	C	40149691	T	C	40149691	3	2	956	1	0	0	0	0	1	0	0	0	7382	1580	55	5	287	5	HPCAL4	1	40149691	Missense_Mutation	SNP	T	TCGA-LL-A5YO-01A-21D-A28B-09	7026621	40149691	209100930	2	76186										
FAAH	0	genome.wustl.edu	37	chr1	46874204	46874204	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	taccatgccctccccggccaTgaggcgggccgtgctggaga	14	15	0	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	46874204	46874204	T	C	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	1	known	missense	c.1025	p.M342T	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	71	0	0	45	5	10	-	-	-	C	46874204	T	C	46874204	3	2	956	1	0	0	0	0	1	0	0	0	5393	1464	51	5	1055	5	FAAH	1	46874204	Missense_Mutation	SNP	T	TCGA-LL-A5YO-01A-21D-A28B-09	6724513	46874204	202376417	3	76187										
CYP4A11	0	genome.wustl.edu	37	chr1	47402424	47402424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	gggtcagcatccgtcgatgcTggaaccatgtctgcccattc	11	13	2	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	47402424	47402424	T	C	SNP	CYP4A11	ENST00000371904	human	ensembl	69_37n	-1	known	missense	c.422	p.Q141R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	57	0	0	33	4	10.81	-	-	-	C	47402424	T	C	47402424	3	2	956	1	0	0	0	0	1	0	0	0	4214	1580	55	5	1173	5	CYP4A11	1	47402424	Missense_Mutation	SNP	T	TCGA-LL-A5YO-01A-21D-A28B-09	528220	47402424	201848197	4	76188										
S100A3	0	genome.wustl.edu	37	chr1	153520190	153520190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ggggggctctgaggggcagtCcttgaagtactcgtggcagt	18	8	1	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	153520190	153520190	C	T	SNP	S100A3	ENST00000368712	human	ensembl	69_37n	-1	known	missense	c.274	p.D92N	0.971	NULL	pfam_S100_Ca-bd_sub	-	no_errors	S100A3	HGNC	ENSG00000188015	75	0	0	36	10	21.74	-	-	-	T	153520190	C	T	153520190	3	4	956	1	0	0	0	0	1	0	0	0	13865	855	30	2	35	2	S100A3	1	153520190	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	106117766	153520190	95730431	5	76189										
PKLR	0	genome.wustl.edu	37	chr1	155265234	155265234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	gccccactgctcaccccctgCaggatcccagtgcggatctc	9	19	2	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	155265234	155265234	C	T	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	silent	c.501	p.L167	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	75	0	0	49	8	14.04	-	-	-	T	155265234	C	T	155265234	2	4	956	1	0	0	0	0	0	0	0	1	12050	697	25	4		4	PKLR	1	155265234	Silent	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	1745044	155265234	93985387	6	76190										
TMEM63A	0	genome.wustl.edu	37	chr1	226040471	226040471	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tcgtactggaaggcctggttCtgggaggaggaggtggtgag	20	5	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	1	226040471	226040471	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	69_37n	-1	known	splice_site	c.1798-1	e18-1	1.000	-	-	-	no_errors	TMEM63A	HGNC	ENSG00000196187	30	0	0	24	10	29.41	-	-	-	T	226040471	C	T	226040471	5	4	956	1	0	0	0	0	0	0	1	0	16285	927	32	2	646	2	TMEM63A	1	226040471	Splice_Site	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	70775237	226040471	23210150	7	76191										
TTN	0	genome.wustl.edu	37	chr2	179410788	179410788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ggaaggctccaggctaaagtGcacttctcctgtgttactct	10	11	2	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	2	179410788	179410788	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.87471	p.C29157	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	31	0	0	19	3	13.64	-	-	-	A	179410788	G	A	179410788	2	1	956	1	0	0	0	0	0	0	0	1	16832	1311	46	4		4	TTN	2	179410788	Silent	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		179410788	63788585	8	76192										
SGOL2	0	genome.wustl.edu	37	chr2	201438212	201438212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	taagactcagaagcaaagcaCtaccactttgaataaaaaag	6	8	1	3			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	2	201438212	201438212	C	A	SNP	SGOL2	ENST00000357799	human	ensembl	69_37n	1	known	missense	c.3143	p.T1048N	0.022	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	19	0	0	15	4	21.05	-	-	-	A	201438212	C	A	201438212	3	1	956	1	0	0	0	0	1	0	0	0	14305	565	20	4	3165	4	SGOL2	2	201438212	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	22027424	201438212	41761161	9	76193										
CRBN	0	genome.wustl.edu	37	chr3	3192638	3192638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	agatcgcgttaagccccaaaAtttttgaggtgacatgtctt	9	8	1	3			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	3	3192638	3192638	A	G	SNP	CRBN	ENST00000231948	human	ensembl	69_37n	-1	known	missense	c.1240	p.F414L	1.000	NULL	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851	75	0	0	46	7	13.21	-	-	-	G	3192638	A	G	3192638	3	3	956	1	0	0	0	0	1	0	0	0	3881	101	4	5	92	5	CRBN	3	3192638	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		3192638	194829792	10	76194										
GLB1	0	genome.wustl.edu	37	chr3	33099722	33099722	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ctgcaggaagcgcaggtagtCaaaatcacaggcaaagtagc	12	9	2	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	3	33099722	33099722	C	G	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.736	p.D246H	0.012	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	24	0	0	23	7	23.33	-	-	-	G	33099722	C	G	33099722	3	3	956	1	0	0	0	0	1	0	0	0	6479	826	29	2	1485	2	GLB1	3	33099722	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	29907084	33099722	164922708	11	76195										
FAT1	0	genome.wustl.edu	37	chr4	187541716	187541716	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tgataaaacaaaggctcattGattggattcccaatagcagt	8	7	1	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	4	187541716	187541716	G	C	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6024	p.I2008M	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	35	0	0	27	6	17.65	-	-	-	C	187541716	G	C	187541716	3	2	956	1	0	0	0	0	1	0	0	0	5735	1280	45	2	7814	2	FAT1	4	187541716	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		187541716	3612560	12	76196										
MYO10	0	genome.wustl.edu	37	chr5	16680162	16680162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tggcctcgttgagcagcttgGtgtagagccggtaacagtgc	15	9	0	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	5	16680162	16680162	G	T	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.4436	p.T1479N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	80	0	0	60	9	13.04	-	-	-	T	16680162	G	T	16680162	3	4	956	1	0	0	0	0	1	0	0	0	10134	1261	44	4	1776	4	MYO10	5	16680162	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		16680162	164235098	13	76197										
OR10C1	0	genome.wustl.edu	37	chr6	29407976	29407976	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	agtcccctatgtacttcttcCtgcgcaccctctcggccttg	7	17	2	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	6	29407976	29407976	C	T	SNP	OR10C1	ENST00000444197	human	ensembl	69_37n	1	known	silent	c.184	p.L62	0.996	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10C1	HGNC	ENSG00000206474	38	0	0	46	12	20.69	-	-	-	T	29407976	C	T	29407976	2	4	956	1	0	0	0	0	0	0	0	1	10971	680	24	4		4	OR10C1	6	29407976	Silent	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09		29407976	141707091	14	76198										
SRPK1	0	genome.wustl.edu	37	chr6	35806552	35806552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tcttggaattctgcctatcaGctctataatgtgcacaatgt	7	9	4	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	6	35806552	35806552	G	T	SNP	SRPK1	ENST00000373822	human	ensembl	69_37n	-1	known	missense	c.1390	p.L464M	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	33	0	0	34	4	10.53	-	-	-	T	35806552	G	T	35806552	3	4	956	1	0	0	0	0	1	0	0	0	15250	986	34	4		4	SRPK1	6	35806552	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	6398576	35806552	135308515	15	76199										
NUPL2	0	genome.wustl.edu	37	chr7	23239802	23239802	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tgtaggctttccagtcaataAcagcagcagtgataatgctc	9	9	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	7	23239802	23239802	A	C	SNP	NUPL2	ENST00000258742	human	ensembl	69_37n	1	known	missense	c.710	p.N237T	0.000	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243	31	0	0	18	5	21.74	-	-	-	C	23239802	A	C	23239802	3	2	956	1	0	0	0	0	1	0	0	0	10848	43	2	5	736	5	NUPL2	7	23239802	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		23239802	135898861	16	76200										
CTTNBP2	0	genome.wustl.edu	37	chr7	117501284	117501284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	cgcagggcctcgatgacaagGtctctggcctccagctcccc	11	17	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	7	117501284	117501284	G	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	missense	c.168	p.D56E	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	32	0	0	15	4	21.05	-	-	-	T	117501284	G	T	117501284	3	4	956	1	0	0	0	0	1	0	0	0	4077	1252	44	4	4911	4	CTTNBP2	7	117501284	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	94261482	117501284	41637379	17	76201										
SARDH	0	genome.wustl.edu	37	chr9	136535741	136535741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	cacaccaggcgccggcggagGcctgcggcccgctgctgctc	15	18	0	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	9	136535741	136535741	G	A	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.2460	p.G820	0.999	pfam_GCV_T_C	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	69	0	0	40	10	20	-	-	-	A	136535741	G	A	136535741	2	1	956	1	0	0	0	0	0	0	0	1	13928	1190	42	4		4	SARDH	9	136535741	Silent	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		136535741	4677690	18	76202										
PHPT1	0	genome.wustl.edu	37	chr9	139745248	139745248	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	gccatttcaactgagaaaatCaaagccaagtaccccgacta	6	12	2	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	9	139745248	139745248	C	T	SNP	PHPT1	ENST00000247665	human	ensembl	69_37n	1	known	silent	c.327	p.I109	1.000	pfam_Ocnus	pfam_Ocnus	-	no_errors	PHPT1	HGNC	ENSG00000054148	96	0	0	52	6	10.34	-	-	-	T	139745248	C	T	139745248	2	4	956	1	0	0	0	0	0	0	0	1	11934	816	29	2		2	PHPT1	9	139745248	Silent	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	3209507	139745248	1468183	19	76203										
LARP4B	0	genome.wustl.edu	37	chr10	931654	931654	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	caaccttagcgtcctgatcaGaagtcatgggctccactggg	11	12	2	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	10	931654	931654	G	T	SNP	LARP4B	ENST00000316157	human	ensembl	69_37n	-1	known	missense	c.8	p.S3Y	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929	51	0	0	18	3	14.29	-	-	-	T	931654	G	T	931654	3	4	956	1	0	0	0	0	1	0	0	0	8685	942	33	2	2276	2	LARP4B	10	931654	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		931654	134603093	20	76204										
SGPL1	0	genome.wustl.edu	37	chr10	72604367	72604367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tggaccctgctgatagtctgGggatatgagtttgtcttcca	12	8	2	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	10	72604367	72604367	G	T	SNP	SGPL1	ENST00000373202	human	ensembl	69_37n	1	known	missense	c.165	p.W55C	0.997	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC	ENSG00000166224	71	0	0	36	4	10	-	-	-	T	72604367	G	T	72604367	3	4	956	1	0	0	0	0	1	0	0	0	14306	1241	43	4	171	4	SGPL1	10	72604367	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	71672713	72604367	62930380	21	76205										
DDX11	0	genome.wustl.edu	37	chr12	31249874	31249874	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	gcacatccaaggcttcctggCagctctcactacggccaacc	8	17	1	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	12	31249874	31249874	C	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	1	known	missense	c.1712	p.A571E	0.008	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	100	0	0	51	9	15	-	-	-	A	31249874	C	A	31249874	3	1	956	1	0	0	0	0	1	0	0	0	4374	710	25	4	1774	4	DDX11	12	31249874	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09		31249874	102602021	22	76206										
CPNE8	0	genome.wustl.edu	37	chr12	39170041	39170041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	caaagaaatatttacttaccCtgcaacagtttaattcctct	3	10	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	12	39170041	39170041	C	G	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	missense	c.470	p.R157T	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	106	0	0	57	7	10.94	-	-	-	G	39170041	C	G	39170041	3	3	956	1	0	0	0	0	1	0	0	0	3848	695	24	4	1280	4	CPNE8	12	39170041	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	7920167	39170041	94681854	23	76207										
RNF6	0	genome.wustl.edu	37	chr13	26788508	26788508	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ggccatttctttgaagttctGactcagaatcggcctccatt	8	11	3	3			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	13	26788508	26788508	G	C	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	nonsense	c.1511	p.S504*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	50	0	0	39	5	11.36	-	-	-	C	26788508	G	C	26788508	4	2	956	1	0	0	0	0	0	1	0	0	13584	1294	45	2	550	2	RNF6	13	26788508	Nonsense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		26788508	88381370	24	76208										
FREM2	0	genome.wustl.edu	37	chr13	39263585	39263585	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ctgtggatcgcctccctccgGagctgggcagtggctgtccc	14	15	0	0			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	13	39263585	39263585	G	C	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	missense	c.2104	p.E702Q	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	86	0	0	44	10	18.52	-	-	-	C	39263585	G	C	39263585	3	2	956	1	0	0	0	0	1	0	0	0	6094	1175	41	2	2106	2	FREM2	13	39263585	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	12475077	39263585	75906293	25	76209										
SIX6	0	genome.wustl.edu	37	chr14	60976445	60976445	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tggaagacccctgggacctgTggacaagtaccgagtaagga	14	9	0	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	14	60976445	60976445	T	G	SNP	SIX6	ENST00000327720	human	ensembl	69_37n	1	known	missense	c.329	p.V110G	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX6	HGNC	ENSG00000184302	49	0	0	27	5	15.62	-	-	-	G	60976445	T	G	60976445	3	3	956	1	0	0	0	0	1	0	0	0	14440	1696	59	5	331	5	SIX6	14	60976445	Missense_Mutation	SNP	T	TCGA-LL-A5YO-01A-21D-A28B-09		60976445	46373095	26	76210										
ABHD2	0	genome.wustl.edu	37	chr15	89731451	89731451	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ctttttggagaccatgttaaGaaaccccagagcctggaaga	10	9	0	4			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	15	89731451	89731451	G	C	SNP	ABHD2	ENST00000352732	human	ensembl	69_37n	1	known	missense	c.843	p.K281N	1.000	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526	38	0	0	24	4	14.29	-	-	-	C	89731451	G	C	89731451	3	2	956	1	0	0	0	0	1	0	0	0	82	933	33	2	865	2	ABHD2	15	89731451	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09		89731451	12799941	27	76211										
PKD1	0	genome.wustl.edu	37	chr16	2149969	2149969	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tggatgcgagtgaaacggctAcgaggcggccggtcccatat	15	10	0	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	16	2149969	2149969	A	C	SNP	PKD1	ENST00000567946	human	ensembl	69_37n	-1	novel	missense	c.1418	p.V473G	0.903	NULL	pfam_LipOase_LH2,pfam_GPS_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1	HGNC	ENSG00000008710	147	0	0	111	20	15.27	-	-	-	C	2149969	A	C	2149969	3	2	956	1	0	0	0	0	1	0	0	0	12037	378	14	5	3167	5	PKD1	16	2149969	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		2149969	88204784	28	76212										
TP53	0	genome.wustl.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	51	0	0	34	8	19.05	-	-	-	C	7578268	A	C	7578268	3	2	956	1	0	0	0	0	1	0	0	0	16477	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		7578268	73616942	29	76213										
PCSK4	0	genome.wustl.edu	37	chr19	1482188	1482188	+	Frame_Shift_Del	DEL	T	T	-													0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ggcagagctgtcccaggatgTaggcggggccgtcacacgct							TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	19	1482188	1482188	T	-	DEL	PCSK4	ENST00000300954	human	ensembl	69_37n	-1	known	frame_shift_del	c.1838	p.Y613fs	0.271	superfamily_Growth_fac_rcpt	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257	8	0	0	4	2	33.33	-	-	-	-	1482188	T	-	1482188	7	5	956	1	0	1	0	1	0	0	0	0	11675	1638	57	0	433	0	PCSK4	19	1482188	Frame_Shift_Del	DEL	T	TCGA-LL-A5YO-01A-21D-A28B-09		1482188	57646795	30	76214										
LAIR2	0	genome.wustl.edu	37	chr19	55020268	55020268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	gctctggaggcccggactccCcggacacagagcccggctcc	13	18	1	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	19	55020268	55020268	C	A	SNP	LAIR2	ENST00000301202	human	ensembl	69_37n	1	known	missense	c.388	p.P130T	0.001	NULL	smart_Ig_sub	-	no_errors	LAIR2	HGNC	ENSG00000167618	62	0	0	41	5	10.87	-	-	-	A	55020268	C	A	55020268	3	1	956	1	0	0	0	0	1	0	0	0	8657	623	22	4	402	4	LAIR2	19	55020268	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	53538080	55020268	4108715	31	76215										
ZNF549	0	genome.wustl.edu	37	chr19	58050116	58050116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	accagaaagttcacagtggaGagaggccttataactgcact	10	9	1	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	19	58050116	58050116	G	A	SNP	ZNF549	ENST00000376233	human	ensembl	69_37n	1	known	missense	c.1744	p.E582K	0.890	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406	34	0	0	19	3	13.64	-	-	-	A	58050116	G	A	58050116	3	1	956	1	0	0	0	0	1	0	0	0	18077	943	33	2	1715	2	ZNF549	19	58050116	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	3029848	58050116	1078867	32	76216										
TMPRSS15	0	genome.wustl.edu	37	chr21	19698835	19698835	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	tagtgatgagaagcacagtcAttctgttggtggtagagaac	13	5	2	3			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	21	19698835	19698835	A	C	SNP	TMPRSS15	ENST00000284885	human	ensembl	69_37n	-1	known	missense	c.1835	p.M612R	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_MAM_dom,pfam_SEA,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_Srcr_rcpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_ConA-like_lec_gl,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_CUB,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	85	0	0	48	25	33.78	-	-	-	C	19698835	A	C	19698835	3	2	956	1	0	0	0	0	1	0	0	0	16341	217	8	5	1264	5	TMPRSS15	21	19698835	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		19698835	28431060	33	76217										
MAGEB10	0	genome.wustl.edu	37	chrX	27840129	27840129	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	cgatggggttatatgacggaAttgagcacttcatgtttggg	14	5	1	2			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	X	27840129	27840129	A	G	SNP	MAGEB10	ENST00000356790	human	ensembl	69_37n	1	known	missense	c.706	p.I236V	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689	27	0	0	15	3	16.67	-	-	-	G	27840129	A	G	27840129	3	3	956	1	0	0	0	0	1	0	0	0	9244	101	4	5	708	5	MAGEB10	23	27840129	Missense_Mutation	SNP	A	TCGA-LL-A5YO-01A-21D-A28B-09		27840129	127430431	34	76218										
PLXNB3	0	genome.wustl.edu	37	chrX	153031697	153031697	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	ccctgcctcttcgctgacttGctccttgctcagcccgcggc	9	19	2	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	X	153031697	153031697	G	C	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	1	known	missense	c.32	p.C11S	0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	129	0	0	57	9	13.64	-	-	-	C	153031697	G	C	153031697	3	2	956	1	0	0	0	0	1	0	0	0	12199	1319	46	4	83	4	PLXNB3	23	153031697	Missense_Mutation	SNP	G	TCGA-LL-A5YO-01A-21D-A28B-09	125191568	153031697	2238863	35	76219										
HCFC1	0	genome.wustl.edu	37	chrX	153220381	153220381	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.194444444444444	7	0.00708681757112199	3.91761363636364	4.47727272727273	3.35795454545455	1	1	5	cttagagccctgggctgcctCcagcgccccagtggccacac	11	18	0	1			TCGA-LL-A5YO-01A-21D-A28B-09	TCGA-LL-A5YO-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5af23455-a0dc-4c6e-8577-e90599523caa	463b9a58-79b7-4b1c-abcb-25fe9c4de4e0	X	153220381	153220381	C	G	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.3469	p.E1157Q	0.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	64	0	0	61	9	12.86	-	-	-	G	153220381	C	G	153220381	3	3	956	1	0	0	0	0	1	0	0	0	7042	864	30	2	2678	2	HCFC1	23	153220381	Missense_Mutation	SNP	C	TCGA-LL-A5YO-01A-21D-A28B-09	188684	153220381	2050179	36	76220										
TAS1R2	0	genome.wustl.edu	37	chr1	19186013	19186013	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	caggaagttaaggtgaacaaTgcccttcatgttggcatgga	12	7	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	19186013	19186013	T	C	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	missense	c.142	p.I48V	0.029	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	46	0	0	15	16	51.61	-	-	-	C	19186013	T	C	19186013	3	2	957	1	0	0	0	0	1	0	0	0	15655	1464	51	5	2401	5	TAS1R2	1	19186013	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09		19186013	230064608	1	76221										
ZBTB40	0	genome.wustl.edu	37	chr1	22852823	22852823	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tctcaggccagctctgagctCgtggcggtgactgtggagga	16	10	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	22852823	22852823	C	T	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	1	known	silent	c.3654	p.L1218	0.745	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	126	0	0	40	6	13.04	-	-	-	T	22852823	C	T	22852823	2	4	957	1	0	0	0	0	0	0	0	1	17638	871	31	1		1	ZBTB40	1	22852823	Silent	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	3666810	22852823	226397798	2	76222										
RHD	0	genome.wustl.edu	37	chr1	25655578	25655578	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tgaatcctttctctgccactCtttgaggagaatctcaccat	6	12	3	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	25655578	25655578	C	A	SNP	RHD	ENST00000342055	human	ensembl	69_37n	1	putative	missense	c.1433	p.S478Y	0.609	NULL	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010	23	0	0	5	13	72.22	-	-	-	A	25655578	C	A	25655578	3	1	957	1	0	0	0	0	1	0	0	0	13411	928	32	2		2	RHD	1	25655578	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	2802755	25655578	223595043	3	76223										
UBAP2L	0	genome.wustl.edu	37	chr1	154231333	154231333	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	aaaattgaaggaaataatccGtgtcctgttctaacccagaa	7	8	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	154231333	154231333	G	A	SNP	UBAP2L	ENST00000484696	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBAP2L	HGNC	ENSG00000143569	118	0	0	65	65	50	-	-	-	A	154231333	G	A	154231333	1	1	957	0	1	0	0	0	0	0	0	0	16935	1160	40	1		1	UBAP2L	1	154231333	RNA	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	128575755	154231333	95019288	4	76224										
ASH1L	0	genome.wustl.edu	37	chr1	155311817	155311817	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tagcggttccggtggatcttGtaaaacaggtgtgctgactt	13	7	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	155311817	155311817	G	C	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	nonsense	c.8385	p.Y2795*	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	53	0	0	83	13	13.54	-	-	-	C	155311817	G	C	155311817	4	2	957	1	0	0	0	0	0	1	0	0	1045	1372	48	4	540	4	ASH1L	1	155311817	Nonsense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	1080484	155311817	93938804	5	76225										
TTC24	0	genome.wustl.edu	37	chr1	156551235	156551235	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ccaataagaaaaagaagaaaAgaaagtggctgcggcaagaa	11	5	0	5			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	156551235	156551235	A	T	SNP	TTC24	ENST00000368236	human	ensembl	69_37n	1	known	nonsense	c.79	p.R27*	0.001	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC24	HGNC	ENSG00000187862	22	0	0	24	15	38.46	-	-	-	T	156551235	A	T	156551235	4	4	957	1	0	0	0	0	0	1	0	0	16789	64	3	5	81	5	TTC24	1	156551235	Nonsense_Mutation	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09	1239418	156551235	92699386	6	76226										
FCRL3	0	genome.wustl.edu	37	chr1	157669486	157669486	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agaaggagaaacttacctgaTtgttctcttccaggagctgt	10	8	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	157669486	157669486	T	C	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	silent	c.48	p.Q16	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	30	0	0	38	5	11.63	-	-	-	C	157669486	T	C	157669486	2	2	957	1	0	0	0	0	0	0	0	1	5842	1490	52	5		5	FCRL3	1	157669486	Silent	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09	1118251	157669486	91581135	7	76227										
F5	0	genome.wustl.edu	37	chr1	169484771	169484771	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	atagctctttacatacatttCagaggacagagacttgcagc	8	9	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	169484771	169484771	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.6454	p.E2152K	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	62	0	0	21	56	72.73	-	-	-	T	169484771	C	T	169484771	3	4	957	1	0	0	0	0	1	0	0	0	5385	835	29	2	243	2	F5	1	169484771	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	11815285	169484771	79765850	8	76228										
TNR	0	genome.wustl.edu	37	chr1	175334320	175334320	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cctggggctgtagttaagaaTgagtctgtctgctgggggag	17	6	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	175334320	175334320	T	G	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.2413	p.I805L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	47	0	0	29	9	23.68	-	-	-	G	175334320	T	G	175334320	3	3	957	1	0	0	0	0	1	0	0	0	16433	1464	51	5	1711	5	TNR	1	175334320	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09	5849549	175334320	73916301	9	76229										
CRB1	0	genome.wustl.edu	37	chr1	197446852	197446852	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tggctcagtgactgtcgcctTgttactgatcctcttgctgg	11	11	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	197446852	197446852	T	G	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.4064	p.L1355W	0.932	NULL	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	25	0	0	13	11	45.83	-	-	-	G	197446852	T	G	197446852	3	3	957	1	0	0	0	0	1	0	0	0	3878	1821	63	5	4110	5	CRB1	1	197446852	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09	22112532	197446852	51803769	10	76230										
PPP2R5A	0	genome.wustl.edu	37	chr1	212515539	212515539	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ttctctcatagttggtatatGaattcttcttgagatttttg	7	5	4	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	212515539	212515539	G	T	SNP	PPP2R5A	ENST00000261461	human	ensembl	69_37n	1	known	nonsense	c.490	p.E164*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5A	HGNC	ENSG00000066027	54	0	0	15	9	37.5	-	-	-	T	212515539	G	T	212515539	4	4	957	1	0	0	0	0	0	1	0	0	12469	1291	45	2	504	2	PPP2R5A	1	212515539	Nonsense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	15068687	212515539	36735082	11	76231										
ARF1	0	genome.wustl.edu	37	chr1	228285577	228285577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tccccaacgccatgaatgcgGccgagatcacagacaagctg	10	14	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	228285577	228285577	G	A	SNP	ARF1	ENST00000272102	human	ensembl	69_37n	1	known	missense	c.409	p.A137T	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761	36	0	0	43	9	17.31	-	-	-	A	228285577	G	A	228285577	3	1	957	1	0	0	0	0	1	0	0	0	846	1203	42	4	423	4	ARF1	1	228285577	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	15770038	228285577	20965044	12	76232										
COX7A2L	0	genome.wustl.edu	37	chr2	42578323	42578323	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	aaaaggaacttcaaagggttTatgccaaaaaacaaaccagt	7	7	1	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	42578323	42578323	T	C	SNP	COX7A2L	ENST00000482463	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944	38	0	0	36	6	14.29	-	-	-	C	42578323	T	C	42578323	1	2	957	0	1	0	0	0	0	0	0	0	3811	1769	61	5		5	COX7A2L	2	42578323	RNA	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09		42578323	200621050	13	76233										
PSME4	0	genome.wustl.edu	37	chr2	54092150	54092150	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	aagtgcacagacacagacttCacttctgtgtcttggtcgag	10	10	3	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	54092150	54092150	C	T	SNP	PSME4	ENST00000476586	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	PSME4	HGNC	ENSG00000068878	43	0	0	14	7	33.33	-	-	-	T	54092150	C	T	54092150	1	4	957	0	1	0	0	0	0	0	0	0	12789	841	29	2		2	PSME4	2	54092150	RNA	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	11513827	54092150	189107223	14	76234										
USP34	0	genome.wustl.edu	37	chr2	61441300	61441300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ggagactgctcacagcagagCctcagaatgccatagtacgc	11	12	2	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	61441300	61441300	C	T	SNP	USP34	ENST00000411912	human	ensembl	69_37n	-1	novel	missense	c.1855	p.A619T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP34	HGNC	ENSG00000115464	65	0	0	45	10	18.18	-	-	-	T	61441300	C	T	61441300	3	4	957	1	0	0	0	0	1	0	0	0	17162	738	26	4	2115	4	USP34	2	61441300	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	7349150	61441300	181758073	15	76235										
KCMF1	0	genome.wustl.edu	37	chr2	85280279	85280279	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	taacttacacaggttgaatgAtcctaaaatgtctgaaacgg	8	7	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	85280279	85280279	A	C	SNP	KCMF1	ENST00000409785	human	ensembl	69_37n	1	known	missense	c.893	p.D298A	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_RING_finger_144,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407	55	0	0	12	11	47.83	-	-	-	C	85280279	A	C	85280279	3	2	957	1	0	0	0	0	1	0	0	0	8054	333	12	5	919	5	KCMF1	2	85280279	Missense_Mutation	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09	23838979	85280279	157919094	16	76236										
ATOH8	0	genome.wustl.edu	37	chr2	86015022	86015022	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tctgttacagggtgtgcaggGgcagagaaggaagggaccag	18	6	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	86015022	86015022	G	C	SNP	ATOH8	ENST00000469442	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ATOH8	HGNC	ENSG00000168874	54	0	0	25	16	39.02	-	-	-	C	86015022	G	C	86015022	1	2	957	0	1	0	0	0	0	0	0	0	1118	1247	43	4		4	ATOH8	2	86015022	RNA	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	734743	86015022	157184351	17	76237										
SCN3A	0	genome.wustl.edu	37	chr2	165952042	165952042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ttctttttctgctggttgaaGttatctatgatgacaccaat	7	7	3	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	165952042	165952042	G	T	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.4410	p.N1470K	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	35	0	0	25	3	10.71	-	-	-	T	165952042	G	T	165952042	3	4	957	1	0	0	0	0	1	0	0	0	14006	1020	36	4	1608	4	SCN3A	2	165952042	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	79937020	165952042	77247331	18	76238										
KLHL23	0	genome.wustl.edu	37	chr2	170592537	170592537	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	taacatagaagctcttgacaCagtgtggatctataacagtg	9	7	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	170592537	170592537	C	A	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	1	known	missense	c.1013	p.T338K	0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	59	0	0	29	5	14.71	-	-	-	A	170592537	C	A	170592537	3	1	957	1	0	0	0	0	1	0	0	0	8431	478	17	4	1015	4	KLHL23	2	170592537	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	4640495	170592537	72606836	19	76239										
INO80D	0	genome.wustl.edu	37	chr2	206872095	206872095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gttcaattccaagtcatgtgGaatgtcagtgatctcattgg	10	7	4	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	206872095	206872095	G	T	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	missense	c.1831	p.P611T	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	35	0	0	20	7	25.93	-	-	-	T	206872095	G	T	206872095	3	4	957	1	0	0	0	0	1	0	0	0	7803	1174	41	2	1260	2	INO80D	2	206872095	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	36279558	206872095	36327278	20	76240										
MYRIP	0	genome.wustl.edu	37	chr3	40204291	40204291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agtgattcaacattttatagGcagtcagaaggtaaagttgc	10	5	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	40204291	40204291	G	T	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	1	known	missense	c.540	p.R180S	0.999	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	51	0	0	20	20	50	-	-	-	T	40204291	G	T	40204291	3	4	957	1	0	0	0	0	1	0	0	0	10172	1194	42	4	554	4	MYRIP	3	40204291	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		40204291	157818139	21	76241										
ZNF589	0	genome.wustl.edu	37	chr3	48298422	48298422	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agacaccagagcctcaaaggCcgccatcttgaaaaaccaac	7	14	2	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	48298422	48298422	C	T	SNP	ZNF589	ENST00000454212	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	ZNF589	HGNC	ENSG00000164048	31	0	0	8	10	55.56	-	-	-	T	48298422	C	T	48298422	1	4	957	0	1	0	0	0	0	0	0	0	18117	754	26	4		4	ZNF589	3	48298422	RNA	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	8094131	48298422	149724008	22	76242										
FBXW12	0	genome.wustl.edu	37	chr3	48419899	48419899	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctcgccatcactatggatcgGaaaaaaactatcaaagtgtg	8	9	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	48419899	48419899	G	C	SNP	FBXW12	ENST00000296438	human	ensembl	69_37n	1	known	silent	c.498	p.R166	0.000	superfamily_Quino_amine_DH_bsu	pfam_F-box_dom_cyclin-like,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXW12	HGNC	ENSG00000164049	39	0	0	17	6	26.09	-	-	-	C	48419899	G	C	48419899	2	2	957	1	0	0	0	0	0	0	0	1	5811	1161	41	2		2	FBXW12	3	48419899	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	121477	48419899	149602531	23	76243										
DNAH1	0	genome.wustl.edu	37	chr3	52407038	52407038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctgttgcgccagtggatggaCcacggcggctggtacgaccg	16	12	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	52407038	52407038	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.6954	p.D2318E	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	38	0	0	32	9	21.95	-	-	-	A	52407038	C	A	52407038	3	1	957	1	0	0	0	0	1	0	0	0	4633	506	18	4	7124	4	DNAH1	3	52407038	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	3987139	52407038	145615392	24	76244										
MAGI1	0	genome.wustl.edu	37	chr3	65425633	65425633	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tgctgctgctcaagctgcttCttccgtttggcttctagaac	9	12	3	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	65425633	65425633	C	A	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	58	0	0	20	16	44.44	-	-	-	A	65425633	C	A	65425633	3	1	957	1	0	0	0	0	1	0	0	0	9261	912	32	2	3491	2	MAGI1	3	65425633	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	13018595	65425633	132596797	25	76245										
HPS3	0	genome.wustl.edu	37	chr3	148884851	148884851	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gtggtccttcatttgacataGcttccattattccgttcttg	7	10	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	148884851	148884851	G	A	SNP	HPS3	ENST00000460822	human	ensembl	69_37n	1	known	splice_site	c.718-1	e5-1	1.000	-	-	-	no_start_codon	HPS3	HGNC	ENSG00000163755	10	0	0	7	4	36.36	-	-	-	A	148884851	G	A	148884851	5	1	957	1	0	0	0	0	0	0	1	0	7391	971	34	4	2678	4	HPS3	3	148884851	Splice_Site	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	83459218	148884851	49137579	26	76246										
C5orf38	0	genome.wustl.edu	37	chr5	2755276	2755276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ccggggacgcggccgactgaGaaggccggggcgctcgccgg	20	14	0	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	5	2755276	2755276	G	C	SNP	C5orf38	ENST00000397835	human	ensembl	69_37n	1	putative	missense	c.467	p.R156T	0.001	NULL	NULL	-	no_errors	C5orf38	HGNC	ENSG00000186493	8	0	0	9	4	30.77	-	-	-	C	2755276	G	C	2755276	3	2	957	1	0	0	0	0	1	0	0	0	2317	957	33	2		2	C5orf38	5	2755276	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		2755276	178159984	27	76247										
ARAP3	0	genome.wustl.edu	37	chr5	141041664	141041664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agaggtcacagggtcatcgaGctcacgaaagaagcgtttga	13	8	3	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	5	141041664	141041664	G	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.2959	p.L987I	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	59	0	0	19	4	17.39	-	-	-	T	141041664	G	T	141041664	3	4	957	1	0	0	0	0	1	0	0	0	842	971	34	4	1731	4	ARAP3	5	141041664	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	138286388	141041664	39873596	28	76248										
EYS	0	genome.wustl.edu	37	chr6	66012732	66012732	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agtgtgttgcccactgtgccTgagtcaccagaagaggaagt	13	9	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	6	66012732	66012732	T	C	SNP	EYS	ENST00000370615	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.951	-	-	-	no_errors	EYS	HGNC	ENSG00000188107	30	0	0	17	3	15	-	-	-	C	66012732	T	C	66012732	1	2	957	0	1	0	0	0	0	0	0	0	5369	1595	55	5		5	EYS	6	66012732	RNA	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09		66012732	105102335	29	76249										
CD36	0	genome.wustl.edu	37	chr7	80300444	80300444	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ttatctcaaaaaattgtacaTcatatggtgtgctagacatc	6	7	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	80300444	80300444	T	A	SNP	CD36	ENST00000309881	human	ensembl	69_37n	1	known	missense	c.970	p.S324T	0.000	pfam_CD36,prints_CD36	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	23	0	0	11	7	38.89	-	-	-	A	80300444	T	A	80300444	3	1	957	1	0	0	0	0	1	0	0	0	3036	1435	50	5	1000	5	CD36	7	80300444	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09		80300444	78838219	30	76250										
ANKIB1	0	genome.wustl.edu	37	chr7	92027881	92027881	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tgactcagctggccaggaccCcaacatcaatgacaatcttc	7	14	3	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	92027881	92027881	C	G	SNP	ANKIB1	ENST00000265742	human	ensembl	69_37n	1	known	missense	c.2888	p.P963R	1.000	NULL	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629	57	0	0	16	15	48.39	-	-	-	G	92027881	C	G	92027881	3	3	957	1	0	0	0	0	1	0	0	0	630	623	22	4	2962	4	ANKIB1	7	92027881	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	11727437	92027881	67110782	31	76251										
PON1	0	genome.wustl.edu	37	chr7	94931605	94931605	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	aaaggtctcctgtctcaggaTccacagatatgttatccacg	8	11	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	94931605	94931605	T	A	SNP	PON1	ENST00000222381	human	ensembl	69_37n	-1	known	missense	c.821	p.D274V	1.000	pfam_SGL,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421	30	0	0	22	5	18.52	-	-	-	A	94931605	T	A	94931605	3	1	957	1	0	0	0	0	1	0	0	0	12322	1435	50	5	254	5	PON1	7	94931605	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09	2903724	94931605	64207058	32	76252										
TRRAP	0	genome.wustl.edu	37	chr7	98493397	98493397	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctttttttagattcatcattTtctggattttgtgaaacaga	6	5	3	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	98493397	98493397	T	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	1	known	missense	c.461	p.F154S	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	63	0	0	59	14	19.18	-	-	-	C	98493397	T	C	98493397	3	2	957	1	0	0	0	0	1	0	0	0	16697	1841	64	5	483	5	TRRAP	7	98493397	Missense_Mutation	SNP	T	TCGA-LL-A5YP-01A-21D-A28B-09	3561792	98493397	60645266	33	76253										
KIF13B	0	genome.wustl.edu	37	chr8	29043904	29043904	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tcttcattttcctctttctgAgttcgttcaaagagtccact	5	11	5	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	8	29043904	29043904	A	T	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	silent	c.402	p.T134	0.804	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	25	0	0	11	3	21.43	-	-	-	T	29043904	A	T	29043904	2	4	957	1	0	0	0	0	0	0	0	1	8327	291	11	5		5	KIF13B	8	29043904	Silent	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09		29043904	117320118	34	76254										
GLIS3	0	genome.wustl.edu	37	chr9	4299661	4299661	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gtctgcgagggcagcggcggCagggggaggaggaggcagag	24	7	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	4299661	4299661	C	A	SNP	GLIS3	ENST00000490709	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.651	-	-	-	no_errors	GLIS3	HGNC	ENSG00000107249	16	0	0	5	5	50	-	-	-	A	4299661	C	A	4299661	1	1	957	0	1	0	0	0	0	0	0	0	6499	725	25	4		4	GLIS3	9	4299661	RNA	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		4299661	136913770	35	76255										
JAK2	0	genome.wustl.edu	37	chr9	5073764	5073764	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	atttggttttaaattatggaGtatgtgtctgtggagacgag	13	2	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	5073764	5073764	G	T	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	1	known	missense	c.1843	p.V615L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	38	0	0	26	4	13.33	-	-	-	T	5073764	G	T	5073764	3	4	957	1	0	0	0	0	1	0	0	0	7992	1029	36	4	1889	4	JAK2	9	5073764	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	774103	5073764	136139667	36	76256										
GRIN3A	0	genome.wustl.edu	37	chr9	104432738	104432738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gtcctcactaagatgcccaaGctggtggagaagaaagggct	13	9	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	104432738	104432738	G	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.1956	p.S652R	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	16	0	0	1	6	85.71	-	-	-	T	104432738	G	T	104432738	3	4	957	1	0	0	0	0	1	0	0	0	6834	962	34	4	1419	4	GRIN3A	9	104432738	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	99358974	104432738	36780693	37	76257										
FUBP3	0	genome.wustl.edu	37	chr9	133470877	133470877	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	attctctctgtagattgctgCtaaaattgattcaattcctc	5	9	3	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	133470877	133470877	C	G	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	1	known	missense	c.92	p.A31G	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	42	0	0	18	7	28	-	-	-	G	133470877	C	G	133470877	3	3	957	1	0	0	0	0	1	0	0	0	6142	797	28	4	98	4	FUBP3	9	133470877	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	29038139	133470877	7742554	38	76258										
FAM78A	0	genome.wustl.edu	37	chr9	134151294	134151294	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tccatgtggctgcacgcctgGatccagccaactacccaagt	9	15	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	134151294	134151294	G	A	SNP	FAM78A	ENST00000372271	human	ensembl	69_37n	-1	known	silent	c.273	p.I91	0.349	NULL	NULL	-	no_errors	FAM78A	HGNC	ENSG00000126882	42	0	0	27	7	20.59	-	-	-	A	134151294	G	A	134151294	2	1	957	1	0	0	0	0	0	0	0	1	5671	1164	41	2		2	FAM78A	9	134151294	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	680417	134151294	7062137	39	76259										
CACNA1B	0	genome.wustl.edu	37	chr9	140878699	140878699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gctgaggatcttcaaagtcaCgaagtacgtcccctgcgctc	10	13	3	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	140878699	140878699	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	1	known	missense	c.1769	p.T590M	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	68	0	0	17	17	50	-	-	-	T	140878699	C	T	140878699	3	4	957	1	0	0	0	0	1	0	0	0	2564	536	19	1	1816	1	CACNA1B	9	140878699	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	6727405	140878699	334732	40	76260										
HKDC1	0	genome.wustl.edu	37	chr10	71010072	71010072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gaaagtttctcgccctggatCttgggggaaccaacttccgg	12	11	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	71010072	71010072	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	69_37n	1	known	missense	c.1597	p.L533F	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	45	0	0	13	10	43.48	-	-	-	T	71010072	C	T	71010072	3	4	957	1	0	0	0	0	1	0	0	0	7244	913	32	2	1639	2	HKDC1	10	71010072	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		71010072	64524675	41	76261										
PTEN	0	genome.wustl.edu	37	chr10	89692893	89692893	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tgcagcaattcactgtaaagCtggaaagggacgaactggtg	13	7	1	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	89692893	89692893	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	1	known	missense	c.377	p.A126G	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	83	0	0	31	28	47.46	-	-	-	G	89692893	C	G	89692893	3	3	957	1	0	0	0	0	1	0	0	0	12818	797	28	4	395	4	PTEN	10	89692893	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	18682821	89692893	45841854	42	76262										
ITPRIP	0	genome.wustl.edu	37	chr10	106074852	106074852	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gccaaaggccaggtcgaactCgtacttgtgggcgatgccct	13	12	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	106074852	106074852	C	G	SNP	ITPRIP	ENST00000278071	human	ensembl	69_37n	-1	known	missense	c.958	p.E320Q	1.000	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841	45	0	0	16	19	54.29	-	-	-	G	106074852	C	G	106074852	3	3	957	1	0	0	0	0	1	0	0	0	7977	893	31	3	689	3	ITPRIP	10	106074852	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	16381959	106074852	29459895	43	76263										
CAPRIN1	0	genome.wustl.edu	37	chr11	34093309	34093309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	accaggaacgaatgaacaaaGgggaaaggcttaatcaagat	11	6	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	11	34093309	34093309	G	A	SNP	CAPRIN1	ENST00000341394	human	ensembl	69_37n	1	known	missense	c.253	p.G85R	1.000	NULL	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	118	0	0	135	23	14.56	-	-	-	A	34093309	G	A	34093309	3	1	957	1	0	0	0	0	1	0	0	0	2660	1000	35	4	259	4	CAPRIN1	11	34093309	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		34093309	100913207	44	76264										
SLC43A3	0	genome.wustl.edu	37	chr11	57182476	57182476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ccaatgaagaggtagtgccaCaactgtatcacagacagcca	9	11	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	11	57182476	57182476	C	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	missense	c.873	p.L291F	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	53	0	0	37	5	11.9	-	-	-	A	57182476	C	A	57182476	3	1	957	1	0	0	0	0	1	0	0	0	14723	477	17	4	622	4	SLC43A3	11	57182476	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	23089167	57182476	77824040	45	76265										
POMP	0	genome.wustl.edu	37	chr13	29252266	29252266	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gctgttcatggaaaccgaggGctgcatcttgtttatagtca	11	8	3	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	13	29252266	29252266	G	T	SNP	POMP	ENST00000460403	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	POMP	HGNC	ENSG00000132963	52	0	0	27	4	12.9	-	-	-	T	29252266	G	T	29252266	1	4	957	0	1	0	0	0	0	0	0	0	12318	1218	42	4		4	POMP	13	29252266	RNA	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		29252266	85917612	46	76266										
DCLK1	0	genome.wustl.edu	37	chr13	36686248	36686248	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ggccagtgaagacactgcccGagaagccgaggtggtcttga	15	10	1	4			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	13	36686248	36686248	G	T	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	silent	c.481	p.R161	1.000	superfamily_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	42	0	0	15	3	16.67	-	-	-	T	36686248	G	T	36686248	2	4	957	1	0	0	0	0	0	0	0	1	4322	1057	37	3		3	DCLK1	13	36686248	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	7433982	36686248	78483630	47	76267										
SLC8A3	0	genome.wustl.edu	37	chr14	70634857	70634857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agatgccatgaagcggtcagCaatgatggacaccccaagga	12	10	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	70634857	70634857	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	missense	c.283	p.A95T	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	55	0	0	24	7	22.58	-	-	-	T	70634857	C	T	70634857	3	4	957	1	0	0	0	0	1	0	0	0	14797	710	25	4	2639	4	SLC8A3	14	70634857	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		70634857	36714683	48	76268										
TMED10	0	genome.wustl.edu	37	chr14	75602565	75602565	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tcgcagctctacctctaatgGtttgagcttctcaacttttg	7	11	3	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	75602565	75602565	G	C	SNP	TMED10	ENST00000303575	human	ensembl	69_37n	-1	known	missense	c.436	p.P146A	1.000	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348	34	0	0	13	10	43.48	-	-	-	C	75602565	G	C	75602565	3	2	957	1	0	0	0	0	1	0	0	0	16098	1261	44	4	231	4	TMED10	14	75602565	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	4967708	75602565	31746975	49	76269										
PLD4	0	genome.wustl.edu	37	chr14	105395685	105395685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctgcagcagctgctgggcagGaacatttccctggctgtggc	14	12	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	105395685	105395685	G	T	SNP	PLD4	ENST00000392593	human	ensembl	69_37n	1	known	missense	c.510	p.R170S	0.782	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	88	0	0	26	32	54.24	-	-	-	T	105395685	G	T	105395685	3	4	957	1	0	0	0	0	1	0	0	0	12122	1165	41	2	524	2	PLD4	14	105395685	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	29793120	105395685	1953855	50	76270										
GRIN2A	0	genome.wustl.edu	37	chr16	9892166	9892166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	actgaagcaaggccaggtcgAtctgcctcttccaaggagag	12	11	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	9892166	9892166	A	G	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.2324	p.I775T	0.999	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	44	0	0	25	9	26.47	-	-	-	G	9892166	A	G	9892166	3	3	957	1	0	0	0	0	1	0	0	0	6830	333	12	5	2082	5	GRIN2A	16	9892166	Missense_Mutation	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09		9892166	80462587	51	76271										
TNRC6A	0	genome.wustl.edu	37	chr16	24788394	24788394	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cacagcagcagcagcaacagCagcagccgcagcagcagcag	12	15	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	24788394	24788394	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	1	known	nonsense	c.304	p.Q102*	0.897	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	68	0	0	32	13	28.89	-	-	-	T	24788394	C	T	24788394	4	4	957	1	0	0	0	0	0	1	0	0	16435	711	25	4	322	4	TNRC6A	16	24788394	Nonsense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	14896228	24788394	65566359	52	76272										
MMP15	0	genome.wustl.edu	37	chr16	58076179	58076179	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cacaaccgcgtcctggacaaCtatcccatgcccatcgggca	8	17	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	58076179	58076179	C	G	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	1	known	missense	c.1209	p.N403K	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	77	0	0	26	20	43.48	-	-	-	G	58076179	C	G	58076179	3	3	957	1	0	0	0	0	1	0	0	0	9725	564	20	4	1235	4	MMP15	16	58076179	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	33287785	58076179	32278574	53	76273										
AP1G1	0	genome.wustl.edu	37	chr16	71773187	71773187	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	atgaaagcccatccaacaagAaggggggctgggatatctgt	13	8	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	71773187	71773187	A	T	SNP	AP1G1	ENST00000433195	human	ensembl	69_37n	-1	known	missense	c.2126	p.F709Y	1.000	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747	22	0	0	15	7	31.82	-	-	-	T	71773187	A	T	71773187	3	4	957	1	0	0	0	0	1	0	0	0	733	246	9	5	427	5	AP1G1	16	71773187	Missense_Mutation	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09	13697008	71773187	18581566	54	76274										
SLC7A5	0	genome.wustl.edu	37	chr16	87902747	87902747	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agcgcgcccacgatggagaaGacgccgcacgcggcccacac	13	17	0	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	87902747	87902747	G	A	SNP	SLC7A5	ENST00000261622	human	ensembl	69_37n	-1	known	silent	c.282	p.V94	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257	115	0	0	50	13	20.63	-	-	-	A	87902747	G	A	87902747	2	1	957	1	0	0	0	0	0	0	0	1	14789	929	33	2		2	SLC7A5	16	87902747	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	16129560	87902747	2452006	55	76275										
GEMIN4	0	genome.wustl.edu	37	chr17	649773	649773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gccctttcgcccccaggaacGcaggatacctgcaaggactt	10	15	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	649773	649773	G	A	SNP	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	missense	c.1510	p.R504C	0.046	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	47	0	0	14	16	53.33	-	-	-	A	649773	G	A	649773	3	1	957	1	0	0	0	0	1	0	0	0	6382	1087	38	1	1670	1	GEMIN4	17	649773	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		649773	80545437	56	76276										
TP53	0	genome.wustl.edu	37	chr17	7577099	7577099	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cttcctctgtgcgccggtctCtcccaggacaggcacaaaca	9	16	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	7577099	7577099	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.839	p.R280K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0	11	19	63.33	-	-	-	T	7577099	C	T	7577099	3	4	957	1	0	0	0	0	1	0	0	0	16477	913	32	2	447	2	TP53	17	7577099	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	6927326	7577099	73618111	57	76277										
BRCA1	0	genome.wustl.edu	37	chr17	41256900	41256900	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cttacactccaaacctgtgtCaagctgaaaagcacaaatga	6	11	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	41256900	41256900	C	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.286	p.D96H	1.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	19	0	0	4	4	50	-	-	-	G	41256900	C	G	41256900	3	3	957	1	0	0	0	0	1	0	0	0	1506	826	29	2	5451	2	BRCA1	17	41256900	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	33679801	41256900	39938310	58	76278										
SPAG9	0	genome.wustl.edu	37	chr17	49197891	49197891	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctctttgaccacctcctcgtCatagcgcccgataagccgct	7	17	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	49197891	49197891	C	T	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.127	p.D43N	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	70	0	0	17	29	63.04	-	-	-	T	49197891	C	T	49197891	3	4	957	1	0	0	0	0	1	0	0	0	15076	826	29	2	3958	2	SPAG9	17	49197891	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	7940991	49197891	31997319	59	76279										
CNDP1	0	genome.wustl.edu	37	chr18	72245477	72245477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cgcgtttgatgagcctggaaCtaaaacagtcatacctggcc	10	11	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	18	72245477	72245477	C	T	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	1	known	missense	c.1082	p.T361I	0.001	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	55	0	0	22	4	15.38	-	-	-	T	72245477	C	T	72245477	3	4	957	1	0	0	0	0	1	0	0	0	3623	565	20	4	1116	4	CNDP1	18	72245477	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		72245477	5831771	60	76280										
NFATC1	0	genome.wustl.edu	37	chr18	77193711	77193711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	agccggggggccgtgaaggcGtcggccggaggacaccccat	18	13	0	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	18	77193711	77193711	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	silent	c.1359	p.A453	0.027	pfam_RHD,superfamily_p53-like_TF_DNA-bd,prints_NFAT,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	84	0	0	38	7	15.56	-	-	-	A	77193711	G	A	77193711	2	1	957	1	0	0	0	0	0	0	0	1	10433	1132	40	1		1	NFATC1	18	77193711	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	4948234	77193711	883537	61	76281										
GRIN3B	0	genome.wustl.edu	37	chr19	1005215	1005215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	catcggtgcctttatgtggcCcctgcactggtccacgtggc	12	14	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	1005215	1005215	C	T	SNP	GRIN3B	ENST00000234389	human	ensembl	69_37n	1	known	missense	c.1715	p.P572L	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032	127	0	0	34	11	24.44	-	-	-	T	1005215	C	T	1005215	3	4	957	1	0	0	0	0	1	0	0	0	6835	623	22	4	1725	4	GRIN3B	19	1005215	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		1005215	58123768	62	76282										
SLC25A41	0	genome.wustl.edu	37	chr19	6432215	6432215	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ctgctctcctgtgtccagtaCctgcagggcagacccggccc	11	17	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	6432215	6432215	C	G	SNP	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	missense	c.208	p.V70L	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	40	0	0	22	8	26.67	-	-	-	G	6432215	C	G	6432215	3	3	957	1	0	0	0	0	1	0	0	0	14595	521	18	4	928	4	SLC25A41	19	6432215	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	5427000	6432215	52696768	63	76283										
AP1M1	0	genome.wustl.edu	37	chr19	16338376	16338376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	caggcggcaaaagcaaatccGtggagctggaggatgtgaag	16	7	0	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16338376	16338376	G	A	SNP	AP1M1	ENST00000444449	human	ensembl	69_37n	1	known	missense	c.727	p.V243M	0.999	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M1	HGNC	ENSG00000072958	34	0	0	19	4	17.39	-	-	-	A	16338376	G	A	16338376	3	1	957	1	0	0	0	0	1	0	0	0	735	1145	40	1	757	1	AP1M1	19	16338376	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	9906161	16338376	42790607	64	76284										
NWD1	0	genome.wustl.edu	37	chr19	16860392	16860392	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gaggtcattcagaccttctgCggacgccaggaactcctggc	12	13	3	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16860392	16860392	C	A	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	nonsense	c.939	p.C313*	0.245	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	28	0	0	7	8	53.33	-	-	-	A	16860392	C	A	16860392	4	1	957	1	0	0	0	0	0	1	0	0	10854	776	27	3	540	3	NWD1	19	16860392	Nonsense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	522016	16860392	42268591	65	76285										
NWD1	0	genome.wustl.edu	37	chr19	16861091	16861091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tttgaggaagcccggaaatgGgcctctttcaccgtgcctgt	12	11	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16861091	16861091	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.1638	p.W546C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	40	0	0	12	7	36.84	-	-	-	T	16861091	G	T	16861091	3	4	957	1	0	0	0	0	1	0	0	0	10854	1241	43	4	1239	4	NWD1	19	16861091	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	699	16861091	42267892	66	76286										
PSMC4	0	genome.wustl.edu	37	chr19	40485743	40485743	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gctgcattcatccgggtcgtGggctcggagtttgtacagaa	14	9	1	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	40485743	40485743	G	T	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	silent	c.693	p.V231	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	38	0	0	44	11	20	-	-	-	T	40485743	G	T	40485743	2	4	957	1	0	0	0	0	0	0	0	1	12769	1335	47	4		4	PSMC4	19	40485743	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	23624652	40485743	18643240	67	76287										
PSMC4	0	genome.wustl.edu	37	chr19	40486244	40486244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tggatccggccctgctacggCcaggacggctggaccgtaaa	14	13	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	40486244	40486244	C	T	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	1	known	missense	c.970	p.P324S	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	22	0	0	19	12	38.71	-	-	-	T	40486244	C	T	40486244	3	4	957	1	0	0	0	0	1	0	0	0	12769	739	26	4	1004	4	PSMC4	19	40486244	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	501	40486244	18642739	68	76288										
NPAS1	0	genome.wustl.edu	37	chr19	47544277	47544277	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tgactggttactaccgttggCtgcagcgtgccgggggcttc	15	11	0	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	47544277	47544277	C	G	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	1	known	missense	c.1111	p.L371V	1.000	pfam_PAS_fold_3	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	146	0	0	79	63	44.37	-	-	-	G	47544277	C	G	47544277	3	3	957	1	0	0	0	0	1	0	0	0	10634	796	28	4	1145	4	NPAS1	19	47544277	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	7058033	47544277	11584706	69	76289										
LIG1	0	genome.wustl.edu	37	chr19	48640923	48640923	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	cctttctcggctgcctcagcCcggacggactccagctgccg	11	18	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	48640923	48640923	C	A	SNP	LIG1	ENST00000542460	human	ensembl	69_37n	-1	known	missense	c.1085	p.G362V	0.998	NULL	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	-	no_errors	LIG1	HGNC	ENSG00000105486	130	0	0	147	24	14.04	-	-	-	A	48640923	C	A	48640923	3	1	957	1	0	0	0	0	1	0	0	0	8836	610	22	4	1713	4	LIG1	19	48640923	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	1096646	48640923	10488060	70	76290										
NLRP5	0	genome.wustl.edu	37	chr19	56515220	56515220	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tccagctacgggctgcaatgGtgtctctatgagctagacaa	11	10	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	56515220	56515220	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	1	known	nonsense	c.201	p.W67*	0.145	pfam_DAPIN,superfamily_DEATH-like	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	41	0	0	29	4	12.12	-	-	-	A	56515220	G	A	56515220	4	1	957	1	0	0	0	0	0	1	0	0	10552	1270	44	4	207	4	NLRP5	19	56515220	Nonsense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	7874297	56515220	2613763	71	76291										
ZNF586	0	genome.wustl.edu	37	chr19	58290715	58290715	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ccagtcttattaaacacttgAgagttcacacaggagaaagg	9	8	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	58290715	58290715	A	T	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	1	known	nonsense	c.760	p.R254*	0.140	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	43	0	0	22	16	42.11	-	-	-	T	58290715	A	T	58290715	4	4	957	1	0	0	0	0	0	1	0	0	18115	296	11	5	770	5	ZNF586	19	58290715	Nonsense_Mutation	SNP	A	TCGA-LL-A5YP-01A-21D-A28B-09	1775495	58290715	838268	72	76292										
CHD6	0	genome.wustl.edu	37	chr20	40033821	40033821	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gcagccatgcctggcagcatCatgggcagcatgctcagggt	14	12	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	20	40033821	40033821	C	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.7560	p.M2520I	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	55	0	0	13	8	38.1	-	-	-	G	40033821	C	G	40033821	3	3	957	1	0	0	0	0	1	0	0	0	3358	826	29	2	591	2	CHD6	20	40033821	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09		40033821	22991699	73	76293										
TCFL5	0	genome.wustl.edu	37	chr20	61492866	61492866	+	Frame_Shift_Del	DEL	C	C	-													0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gtgctgcagctgcgtgtactCcacctccgtcatctccacca							TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	20	61492866	61492866	C	-	DEL	TCFL5	ENST00000335351	human	ensembl	69_37n	-1	known	frame_shift_del	c.157	p.E53fs	0.994	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCFL5	HGNC	ENSG00000101190	10	0	0	2	2	50	-	-	-	-	61492866	C	-	61492866	7	5	957	1	0	1	0	1	0	0	0	0	15794	864	30	0	1369	0	TCFL5	20	61492866	Frame_Shift_Del	DEL	C	TCGA-LL-A5YP-01A-21D-A28B-09	21459045	61492866	1532654	74	76294										
GCFC1	0	genome.wustl.edu	37	chr21	34132196	34132196	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	tttgagatttggcatctgatGatccataggccgtataacta	9	7	1	3			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	21	34132196	34132196	G	A	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	missense	c.1085	p.S362L	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	36	0	0	43	10	18.52	-	-	-	A	34132196	G	A	34132196	3	1	957	1	0	0	0	0	1	0	0	0	6339	1294	45	2	1838	2	GCFC1	21	34132196	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		34132196	13997699	75	76295										
KRTAP10-11	0	genome.wustl.edu	37	chr21	46067173	46067173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	acctcctcctgccagtccagCtgctgccgcccggcctcctg	9	21	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	21	46067173	46067173	C	T	SNP	KRTAP10-11	ENST00000334670	human	ensembl	69_37n	1	known	silent	c.798	p.S266	0.997	NULL	NULL	-	no_errors	KRTAP10-11	HGNC	ENSG00000243489	112	0	0	71	43	37.72	-	-	-	T	46067173	C	T	46067173	2	4	957	1	0	0	0	0	0	0	0	1	8560	796	28	4		4	KRTAP10-11	21	46067173	Silent	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	11934977	46067173	2062722	76	76296										
KLHDC7B	0	genome.wustl.edu	37	chr22	50987927	50987927	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	accttccctgtggcccacgaGgctgtggcctgccgtgggga	15	14	0	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	22	50987927	50987927	G	A	SNP	KLHDC7B	ENST00000395676	human	ensembl	69_37n	1	known	silent	c.1332	p.E444	1.000	smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487	35	0	0	19	14	42.42	-	-	-	A	50987927	G	A	50987927	2	1	957	1	0	0	0	0	0	0	0	1	8414	991	35	4		4	KLHDC7B	22	50987927	Silent	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		50987927	316639	77	76297										
CPT1B	0	genome.wustl.edu	37	chr22	51012017	51012017	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ggggaggggtcgtccaggatCctctggaactgcatctccag	15	11	2	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	22	51012017	51012017	C	T	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	silent	c.1098	p.R366	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	66	0	0	21	19	47.5	-	-	-	T	51012017	C	T	51012017	2	4	957	1	0	0	0	0	0	0	0	1	3862	854	30	2		2	CPT1B	22	51012017	Silent	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	24090	51012017	292549	78	76298										
SUV39H1	0	genome.wustl.edu	37	chrX	48557406	48557406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ggaacctctatgactttgaaGtcgagtacctgtgcgattac	10	9	1	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	48557406	48557406	G	T	SNP	SUV39H1	ENST00000337852	human	ensembl	69_37n	1	known	missense	c.166	p.V56F	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pirsf_Histone_H3-K9_MeTrfase,pfscan_Chromo_domain/shadow	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945	54	0	0	41	5	10.87	-	-	-	T	48557406	G	T	48557406	3	4	957	1	0	0	0	0	1	0	0	0	15503	1029	36	4	139	4	SUV39H1	23	48557406	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09		48557406	106713154	79	76299										
HUWE1	0	genome.wustl.edu	37	chrX	53610743	53610743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	gggtccacagggactcccagCatgctcacgcaggcccggat	13	15	1	0			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	53610743	53610743	C	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.5295	p.M1765I	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	62	0	0	49	16	24.62	-	-	-	A	53610743	C	A	53610743	3	1	957	1	0	0	0	0	1	0	0	0	7515	710	25	4	8001	4	HUWE1	23	53610743	Missense_Mutation	SNP	C	TCGA-LL-A5YP-01A-21D-A28B-09	5053337	53610743	101659817	80	76300										
BCORL1	0	genome.wustl.edu	37	chrX	129189956	129189956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	ccgagttctacaggcaggtgGcctccagtcagctgctgacc	12	14	2	1			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	129189956	129189956	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	1	known	missense	c.5203	p.A1735S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	54	0	0	36	4	10	-	-	-	T	129189956	G	T	129189956	3	4	957	1	0	0	0	0	1	0	0	0	1391	1203	42	4	5253	4	BCORL1	23	129189956	Missense_Mutation	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	75579213	129189956	26080604	81	76301										
GAB3	0	genome.wustl.edu	37	chrX	153906338	153906338	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.121951219512195	10	0.211842680293154	1.70607777994919	1.57202881152461	1.77079107505071	0.226194642616772	0.83155060263902	0	aaactacacattctctcttgGttttgacctgtgttgaccat	6	10	2	2			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	153906338	153906338	G	A	SNP	GAB3	ENST00000496390	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GAB3	HGNC	ENSG00000160219	17	0	0	11	3	21.43	-	-	-	A	153906338	G	A	153906338	1	1	957	0	1	0	0	0	0	0	0	0	6199	1276	44	4		4	GAB3	23	153906338	RNA	SNP	G	TCGA-LL-A5YP-01A-21D-A28B-09	24716382	153906338	1364222	82	76302										
SPEN	0	genome.wustl.edu	37	chr1	16260594	16260595	+	Frame_Shift_Ins	INS	-	-	T													0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	attgctcccaaaattacctcINStgttattagccggatgcctg							TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	16260594	16260595	-	T	INS	SPEN	ENST00000375759	human	ensembl	69_37n	1	known	frame_shift_ins	c.7859_7860	p.V2621fs	1.000:0.989	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	72	0	0	17	32	65.31	-	-	-	T	16260595	-	T	16260594	7	5	958	1	0	1	1	0	0	0	0	0	15129	913	32	0	7901	0	SPEN	1	16260594	Frame_Shift_Ins	INS	-	TCGA-LQ-A4E4-01A-11D-A25Q-09		16260594	232990027	1	76303										
SLC1A7	0	genome.wustl.edu	37	chr1	53608037	53608037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gaagccgaggaggcagcccaCgatgacagacagcacagaca	13	12	0	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	53608037	53608037	C	T	SNP	SLC1A7	ENST00000371494	human	ensembl	69_37n	-1	known	missense	c.85	p.V29M	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383	47	0	0	24	15	38.46	-	-	-	T	53608037	C	T	53608037	3	4	958	1	0	0	0	0	1	0	0	0	14526	536	19	1	1641	1	SLC1A7	1	53608037	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	37347443	53608037	195642584	2	76304										
DOCK7	0	genome.wustl.edu	37	chr1	63114126	63114126	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgccatctggagcttcatcaGattcaaaaacttgttttggc	8	9	4	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	63114126	63114126	G	T	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.479	p.S160Y	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	85	0	0	48	34	41.46	-	-	-	T	63114126	G	T	63114126	3	4	958	1	0	0	0	0	1	0	0	0	4727	942	33	2	6030	2	DOCK7	1	63114126	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	9506089	63114126	186136495	3	76305										
LPPR4	0	genome.wustl.edu	37	chr1	99772371	99772371	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	aatgagcatcaccaccacggAattaccaccatccgcgtcac	6	16	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	99772371	99772371	A	T	SNP	LPPR4	ENST00000370185	human	ensembl	69_37n	1	known	silent	c.2097	p.G699	0.101	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	RP4-788L13.1	Clone_based_vega_gene	ENSG00000117600	51	0	0	32	16	33.33	-	-	-	T	99772371	A	T	99772371	2	4	958	1	0	0	0	0	0	0	0	1	8993	233	9	5		5	LPPR4	1	99772371	Silent	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	36658245	99772371	149478250	4	76306										
HRNR	0	genome.wustl.edu	37	chr1	152191390	152191390	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ccagacccatgtcggccataGctgggagactgccctgaccc	11	16	0	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	152191390	152191390	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.2715	p.S905	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	118	0	0	68	31	31.31	-	-	-	A	152191390	G	A	152191390	2	1	958	1	0	0	0	0	0	0	0	1	7410	962	34	4		4	HRNR	1	152191390	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	52419019	152191390	97059231	5	76307										
GON4L	0	genome.wustl.edu	37	chr1	155785776	155785777	+	RNA	INS	-	-	A													0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	aaggggaagaagcagggcagINSaaaaaaaaaaaatcctaaga							TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	155785776	155785777	-	A	INS	GON4L	ENST00000471341	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	12	0	0	15	2	11.76	-	-	-	A	155785777	-	A	155785776	6	5	958	0	1	1	1	0	0	0	0	0	6621	957	33	0		0	GON4L	1	155785776	RNA	INS	-	TCGA-LQ-A4E4-01A-11D-A25Q-09	3594386	155785776	93464845	6	76308										
SPTA1	0	genome.wustl.edu	37	chr1	158615326	158615326	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctctatgccagttaagtcttCggccagctcctgtgatgata	9	11	2	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	158615326	158615326	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.3955	p.E1319Q	0.251	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	41	0	0	35	4	10.26	-	-	-	G	158615326	C	G	158615326	3	3	958	1	0	0	0	0	1	0	0	0	15207	893	31	3	3404	3	SPTA1	1	158615326	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	2829550	158615326	90635295	7	76309										
FCGR2C	0	genome.wustl.edu	37	chr1	161565622	161565622	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ttggatcatttctggtaaatAtttatgttagacagaaataa	7	3	2	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	161565622	161565622	A	G	SNP	FCGR2C	ENST00000473530	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	FCGR2C	HGNC	ENSG00000244682	9	0	0	9	6	40	-	-	-	G	161565622	A	G	161565622	1	3	958	0	1	0	0	0	0	0	0	0	5829	464	16	5		5	FCGR2C	1	161565622	RNA	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	2950296	161565622	87684999	8	76310										
ATP2B4	0	genome.wustl.edu	37	chr1	203689684	203689684	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	catcttacctcagggcatcgCaggcacagatgtagcaaagg	11	11	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	203689684	203689684	C	G	SNP	ATP2B4	ENST00000357681	human	ensembl	69_37n	1	known	missense	c.2414	p.A805G	1.000	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B4	HGNC	ENSG00000058668	91	0	0	99	49	33.11	-	-	-	G	203689684	C	G	203689684	3	3	958	1	0	0	0	0	1	0	0	0	1146	710	25	4	2472	4	ATP2B4	1	203689684	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	42124062	203689684	45560937	9	76311										
KCTD3	0	genome.wustl.edu	37	chr1	215792314	215792314	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atccagtaggatgggctcaaGaccaaggcgctacttgttca	11	10	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	1	215792314	215792314	G	C	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	missense	c.1649	p.R550T	0.993	smart_WD40_repeat	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	90	0	0	121	17	12.32	-	-	-	C	215792314	G	C	215792314	3	2	958	1	0	0	0	0	1	0	0	0	8164	942	33	2	1711	2	KCTD3	1	215792314	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	12102630	215792314	33458307	10	76312										
ASXL2	0	genome.wustl.edu	37	chr2	25973043	25973043	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctgaggaaagcaggggctctGaagatgtggagaagttcggc	17	6	1	4			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	25973043	25973043	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1382	p.S461L	0.527	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	115	0	0	75	56	42.75	-	-	-	A	25973043	G	A	25973043	3	1	958	1	0	0	0	0	1	0	0	0	1071	1294	45	2	2933	2	ASXL2	2	25973043	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		25973043	217226330	11	76313										
MCFD2	0	genome.wustl.edu	37	chr2	47135039	47135039	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgcattttgaagtaatggagCtgcaattcttgtggcgacat	11	6	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	47135039	47135039	C	T	SNP	MCFD2	ENST00000319466	human	ensembl	69_37n	-1	known	silent	c.219	p.Q73	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	MCFD2	HGNC	ENSG00000180398	68	0	0	41	19	31.67	-	-	-	T	47135039	C	T	47135039	2	4	958	1	0	0	0	0	0	0	0	1	9452	796	28	4		4	MCFD2	2	47135039	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	21161996	47135039	196064334	12	76314										
LRP2	0	genome.wustl.edu	37	chr2	170027154	170027154	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctgattgacacatcgaaactCgctctctgtgcactcccggg	9	14	1	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	170027154	170027154	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.11287	p.E3763Q	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	57	0	0	42	20	32.26	-	-	-	G	170027154	C	G	170027154	3	3	958	1	0	0	0	0	1	0	0	0	9022	893	31	3	2764	3	LRP2	2	170027154	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	122892115	170027154	73172219	13	76315										
BMPR2	0	genome.wustl.edu	37	chr2	203395559	203395559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ccatcgagatttaaacagcaGaaatgtcctagtgaaaaatg	8	7	0	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	203395559	203395559	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	1	known	missense	c.1010	p.R337K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	83	0	0	68	23	25.27	-	-	-	A	203395559	G	A	203395559	3	1	958	1	0	0	0	0	1	0	0	0	1476	942	33	2	1040	2	BMPR2	2	203395559	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	33368405	203395559	39803814	14	76316										
MAP2	0	genome.wustl.edu	37	chr2	210570428	210570428	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctctctcaacagttctatctCttcttcagcacggcggacca	6	15	6	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	210570428	210570428	C	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	missense	c.4709	p.S1570Y	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	70	0	0	34	24	41.38	-	-	-	A	210570428	C	A	210570428	3	1	958	1	0	0	0	0	1	0	0	0	9306	913	32	2	4914	2	MAP2	2	210570428	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	7174869	210570428	32628945	15	76317										
ERBB4	0	genome.wustl.edu	37	chr2	212578349	212578349	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tagggcaggcacgcacacaaGaactggaatctaccacaaag	10	11	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	2	212578349	212578349	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.908	p.S303F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	41	0	0	33	7	17.5	-	-	-	A	212578349	G	A	212578349	3	1	958	1	0	0	0	0	1	0	0	0	5246	942	33	2	3102	2	ERBB4	2	212578349	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	2007921	212578349	30621024	16	76318										
KIF15	0	genome.wustl.edu	37	chr3	44826336	44826336	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ttttttttttcatttttttaGgaccatctgaatctgataat	4	5	3	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	44826336	44826336	G	T	SNP	KIF15	ENST00000326047	human	ensembl	69_37n	1	known	splice_site	c.362-1	e6-1	1.000	-	-	-	no_errors	KIF15	HGNC	ENSG00000163808	56	0	0	42	26	38.24	-	-	-	T	44826336	G	T	44826336	5	4	958	1	0	0	0	0	0	0	1	0	8329	1014	35	4	383	4	KIF15	3	44826336	Splice_Site	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		44826336	153196094	17	76319										
FOXP1	0	genome.wustl.edu	37	chr3	71101699	71101699	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgtcggtacctctttaggctGttttccagcatgttgttgtt	10	8	1	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	71101699	71101699	G	A	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	nonsense	c.499	p.Q167*	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	130	0	0	80	41	33.88	-	-	-	A	71101699	G	A	71101699	4	1	958	1	0	0	0	0	0	1	0	0	6074	1386	48	4	1586	4	FOXP1	3	71101699	Nonsense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	26275363	71101699	126920731	18	76320										
PHLDB2	0	genome.wustl.edu	37	chr3	111685514	111685514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atggagagacttttgaagcaGgctcatgcagaaaagacgcg	13	7	1	4			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	111685514	111685514	G	T	SNP	PHLDB2	ENST00000393925	human	ensembl	69_37n	1	known	missense	c.3132	p.Q1044H	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	40	0	0	40	21	34.43	-	-	-	T	111685514	G	T	111685514	3	4	958	1	0	0	0	0	1	0	0	0	11926	991	35	4	3267	4	PHLDB2	3	111685514	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	40583815	111685514	86336916	19	76321										
GTPBP8	0	genome.wustl.edu	37	chr3	112714087	112714087	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	aagattttgttgacatggtaGagacctatctaaaagaacga	9	5	1	4			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	112714087	112714087	G	C	SNP	GTPBP8	ENST00000383678	human	ensembl	69_37n	1	known	missense	c.541	p.E181Q	1.000	pfam_GTP_binding_domain,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,tigrfam_GTP-bd_ribosome_bio_YsxC	pfam_GTP_binding_domain,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,pfam_SRP_receptor_beta_su,tigrfam_GTP-bd_ribosome_bio_YsxC	-	no_errors	GTPBP8	HGNC	ENSG00000163607	49	0	0	21	26	55.32	-	-	-	C	112714087	G	C	112714087	3	2	958	1	0	0	0	0	1	0	0	0	6935	943	33	2	551	2	GTPBP8	3	112714087	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	1028573	112714087	85308343	20	76322										
ROPN1	0	genome.wustl.edu	37	chr3	123694370	123694370	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gccagctcctctgcacggatGatcagtctgccagcaacctg	10	15	3	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	123694370	123694370	G	A	SNP	ROPN1	ENST00000184183	human	ensembl	69_37n	-1	known	silent	c.252	p.I84	0.985	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1	HGNC	ENSG00000065371	35	0	0	19	12	38.71	-	-	-	A	123694370	G	A	123694370	2	1	958	1	0	0	0	0	0	0	0	1	13609	1280	45	2		2	ROPN1	3	123694370	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	10980283	123694370	74328060	21	76323										
SI	0	genome.wustl.edu	37	chr3	164776994	164776994	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctgtccatggtcatgcaaatCttgcacaaattgagggagtc	10	9	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	164776994	164776994	C	T	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.1240	p.D414N	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	46	0	0	39	18	31.58	-	-	-	T	164776994	C	T	164776994	3	4	958	1	0	0	0	0	1	0	0	0	14386	913	32	2	4395	2	SI	3	164776994	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	41082624	164776994	33245436	22	76324										
PIK3CA	0	genome.wustl.edu	37	chr3	178936083	178936083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tacacgagatcctctctctgAaatcactgagcaggagaaag	9	10	3	4			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	178936083	178936083	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1625	p.E542G	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	74	0	0	43	22	33.85	-	-	-	G	178936083	A	G	178936083	3	3	958	1	0	0	0	0	1	0	0	0	11987	246	9	5	1659	5	PIK3CA	3	178936083	Missense_Mutation	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	14159089	178936083	19086347	23	76325										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	34	0	0	26	12	31.58	-	-	-	G	178952085	A	G	178952085	3	3	958	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	16002	178952085	19070345	24	76326										
PPEF2	0	genome.wustl.edu	37	chr4	76797716	76797716	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ggaagagagcggctttcgggGagaaaccatgggatgggtcc	18	7	0	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	4	76797716	76797716	G	A	SNP	PPEF2	ENST00000286719	human	ensembl	69_37n	-1	known	silent	c.1044	p.L348	0.687	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_Metallo_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_HAND_2	-	no_errors	PPEF2	HGNC	ENSG00000156194	88	0	0	41	28	40.58	-	-	-	A	76797716	G	A	76797716	2	1	958	1	0	0	0	0	0	0	0	1	12381	1161	41	2		2	PPEF2	4	76797716	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		76797716	114356560	25	76327										
ENPEP	0	genome.wustl.edu	37	chr4	111470954	111470954	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tttcatggaactacactcttGagcaataccagaaaacttca	5	10	3	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	4	111470954	111470954	G	A	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	1	known	missense	c.2413	p.E805K	0.060	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	74	0	0	54	30	35.71	-	-	-	A	111470954	G	A	111470954	3	1	958	1	0	0	0	0	1	0	0	0	5165	1291	45	2	2479	2	ENPEP	4	111470954	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	34673238	111470954	79683322	26	76328										
HEATR7B2	0	genome.wustl.edu	37	chr5	40998210	40998210	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gagggtttgcaaagcagcctCagctgctctctggacactaa	11	11	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	40998210	40998210	C	T	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.4702	p.E1568K	0.940	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	52	0	0	43	19	30.65	-	-	-	T	40998210	C	T	40998210	3	4	958	1	0	0	0	0	1	0	0	0	7086	835	29	2	59	2	HEATR7B2	5	40998210	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		40998210	139917050	27	76329										
ADAMTS19	0	genome.wustl.edu	37	chr5	128990004	128990004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctactctgtatgtagaaaaaCcatgtgccttgttttgctct	7	9	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	128990004	128990004	C	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	69_37n	1	known	missense	c.2164	p.P722T	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	86	0	0	38	18	32.14	-	-	-	A	128990004	C	A	128990004	3	1	958	1	0	0	0	0	1	0	0	0	264	507	18	4	2218	4	ADAMTS19	5	128990004	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	87991794	128990004	51925256	28	76330										
CHSY3	0	genome.wustl.edu	37	chr5	129520290	129520290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gagaaccagccccctcgacaGagcctcagtagcattttaag	9	13	1	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	129520290	129520290	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	1	known	silent	c.1455	p.Q485	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	52	0	0	20	15	42.86	-	-	-	A	129520290	G	A	129520290	2	1	958	1	0	0	0	0	0	0	0	1	3442	933	33	2		2	CHSY3	5	129520290	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	530286	129520290	51394970	29	76331										
ACSL6	0	genome.wustl.edu	37	chr5	131295289	131295289	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	accatatcttccaaaatggcTttcttcagatcctgaatcaa	4	11	4	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	131295289	131295289	T	A	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	missense	c.1971	p.K657N	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	63	0	0	42	19	31.15	-	-	-	A	131295289	T	A	131295289	3	1	958	1	0	0	0	0	1	0	0	0	181	1606	56	5	205	5	ACSL6	5	131295289	Missense_Mutation	SNP	T	TCGA-LQ-A4E4-01A-11D-A25Q-09	1774999	131295289	49619971	30	76332										
ZCCHC10	0	genome.wustl.edu	37	chr5	132358535	132358535	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	caaagctgagagggatacctAataacgatggatggctgaat	12	6	0	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	132358535	132358535	A	G	SNP	ZCCHC10	ENST00000513541	human	ensembl	69_37n	-1	putative	silent	c.105	p.I35	0.089	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC10	HGNC	ENSG00000155329	44	0	0	22	20	47.62	-	-	-	G	132358535	A	G	132358535	2	3	958	1	0	0	0	0	0	0	0	1	17675	377	13	5		5	ZCCHC10	5	132358535	Silent	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	1063246	132358535	48556725	31	76333										
GABRA6	0	genome.wustl.edu	37	chr5	161116116	161116116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	aagtccattgctcacaacatGacaactcctaataaactctt	3	12	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	5	161116116	161116116	G	A	SNP	GABRA6	ENST00000274545	human	ensembl	69_37n	1	known	missense	c.387	p.M129I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863	55	0	0	54	8	12.9	-	-	-	A	161116116	G	A	161116116	3	1	958	1	0	0	0	0	1	0	0	0	6214	1290	45	2	401	2	GABRA6	5	161116116	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	28757581	161116116	19799144	32	76334										
PKHD1	0	genome.wustl.edu	37	chr6	51612854	51612854	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgacggaattttgtggagcaGaaaatacatacactactgcc	9	8	0	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	6	51612854	51612854	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	missense	c.9560	p.S3187Y	0.006	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	38	0	0	23	13	36.11	-	-	-	T	51612854	G	T	51612854	3	4	958	1	0	0	0	0	1	0	0	0	12045	942	33	2	2743	2	PKHD1	6	51612854	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		51612854	119502213	33	76335										
LPA	0	genome.wustl.edu	37	chr6	161071404	161071404	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ttctgtggtcctattatgttGatgtggtgtcatagatgacc	11	6	2	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	6	161071404	161071404	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	nonsense	c.175	p.Q59*	0.063	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	236	0	0	146	81	35.68	-	-	-	A	161071404	G	A	161071404	4	1	958	1	0	0	0	0	0	1	0	0	8969	1299	45	2	6099	2	LPA	6	161071404	Nonsense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	109458550	161071404	10043663	34	76336										
LAMB1	0	genome.wustl.edu	37	chr7	107569873	107569873	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ataccttgctcttttagcttCttctaacaacatctcagctc	3	13	4	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	7	107569873	107569873	C	A	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	nonsense	c.4729	p.E1577*	1.000	superfamily_Prefoldin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	137	0	0	61	74	54.81	-	-	-	A	107569873	C	A	107569873	4	1	958	1	0	0	0	0	0	1	0	0	8664	922	32	2	651	2	LAMB1	7	107569873	Nonsense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		107569873	51568790	35	76337										
KEL	0	genome.wustl.edu	37	chr7	142640100	142640100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgagcttcctggagggcatgGttgtcacaggcgaggcagcc	16	10	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	7	142640100	142640100	G	A	SNP	KEL	ENST00000355265	human	ensembl	69_37n	-1	known	silent	c.1803	p.N601	0.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	89	0	0	37	29	43.94	-	-	-	A	142640100	G	A	142640100	2	1	958	1	0	0	0	0	0	0	0	1	8195	1252	44	4		4	KEL	7	142640100	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	35070227	142640100	16498563	36	76338										
RIMS2	0	genome.wustl.edu	37	chr8	104987653	104987653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	agtaatgtcatcaaaccactGttcaccatcagggtctcctc	6	13	5	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	8	104987653	104987653	G	T	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	1	known	missense	c.2846	p.C949F	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	49	0	0	35	4	10.26	-	-	-	T	104987653	G	T	104987653	3	4	958	1	0	0	0	0	1	0	0	0	13454	1377	48	4	3034	4	RIMS2	8	104987653	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		104987653	41376369	37	76339										
COL14A1	0	genome.wustl.edu	37	chr8	121290773	121290773	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ggttataactgatggaagatCacaagatgatgtgaacaaaa	10	4	1	5			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	8	121290773	121290773	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	1	known	missense	c.3437	p.S1146L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	50	0	0	22	8	26.67	-	-	-	T	121290773	C	T	121290773	3	4	958	1	0	0	0	0	1	0	0	0	3701	838	29	2	3543	2	COL14A1	8	121290773	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	16303120	121290773	25073249	38	76340										
ASAP1	0	genome.wustl.edu	37	chr8	131149217	131149217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gtgatatcaggtcaaaagatTttttgtcttcggcattaggt	10	5	3	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	8	131149217	131149217	T	C	SNP	ASAP1	ENST00000357668	human	ensembl	69_37n	-1	known	missense	c.1148	p.K383R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,prints_ArfGAP,prints_p67phox,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP	-	no_errors	ASAP1	HGNC	ENSG00000153317	95	0	0	59	32	35.16	-	-	-	C	131149217	T	C	131149217	3	2	958	1	0	0	0	0	1	0	0	0	1014	1841	64	5	2309	5	ASAP1	8	131149217	Missense_Mutation	SNP	T	TCGA-LQ-A4E4-01A-11D-A25Q-09	9858444	131149217	15214805	39	76341										
PTK2	0	genome.wustl.edu	37	chr8	141762030	141762030	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tcctggggtctgggcagcatCaacattaggatcacttatat	10	9	3	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	8	141762030	141762030	C	T	SNP	PTK2	ENST00000524202	human	ensembl	69_37n	-1	known	silent	c.912	p.L304	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_FERM_central,superfamily_Kinase-like_dom,pfscan_FERM_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTK2	HGNC	ENSG00000169398	77	0	0	68	10	12.82	-	-	-	T	141762030	C	T	141762030	2	4	958	1	0	0	0	0	0	0	0	1	12843	841	29	2		2	PTK2	8	141762030	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	10612813	141762030	4601992	40	76342										
LY6H	0	genome.wustl.edu	37	chr8	144239709	144239709	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gcaggccccaggctgagcagGagccccccggccagggccca	15	18	0	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	8	144239709	144239709	G	A	SNP	LY6H	ENST00000342752	human	ensembl	69_37n	-1	known	silent	c.444	p.L148	0.978	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6H	HGNC	ENSG00000176956	46	0	0	26	21	44.68	-	-	-	A	144239709	G	A	144239709	2	1	958	1	0	0	0	0	0	0	0	1	9164	1161	41	2		2	LY6H	8	144239709	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	2477679	144239709	2124313	41	76343										
CDKN2A	0	genome.wustl.edu	37	chr9	21971122	21971123	+	Frame_Shift_Del	DEL	GT	GT	-													0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cagcgtcgtgcacgggtcggGtgagagtggcggggtcggcg							TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	9	21971122	21971123	GT	-	DEL	CDKN2A	ENST00000361570	human	ensembl	69_37n	-1	known	frame_shift_del	c.402_401	p.H134fs	1.000:0.999	NULL	pfam_Cyclin_kinase-Inhib_2A	-	no_errors	CDKN2A	HGNC	ENSG00000147889	22	0	0	1	4	80	-	-	-	-	21971123	GT	-	21971122	7	5	958	1	0	1	0	1	0	0	0	0	3190	1261	44	0	242	0	CDKN2A	9	21971122	Frame_Shift_Del	DEL	GT	TCGA-LQ-A4E4-01A-11D-A25Q-09		21971122	119242309	42	76344										
TRPM3	0	genome.wustl.edu	37	chr9	73736264	73736264	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ataaacggtcccccacggctCtggcatcccatggtcatctc	8	16	3	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	9	73736264	73736264	C	G	SNP	TRPM3	ENST00000377110	human	ensembl	69_37n	-1	known	missense	c.7	p.E3Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	27	0	0	15	12	44.44	-	-	-	G	73736264	C	G	73736264	3	3	958	1	0	0	0	0	1	0	0	0	16683	922	32	2	5339	2	TRPM3	9	73736264	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	51765142	73736264	67477167	43	76345										
CTNNA3	0	genome.wustl.edu	37	chr10	67829089	67829089	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gtgaagtctgtcatctccatCatgatcatacacatgttctt	6	10	6	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	10	67829089	67829089	C	A	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	missense	c.2136	p.M712I	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	68	0	0	66	8	10.81	-	-	-	A	67829089	C	A	67829089	3	1	958	1	0	0	0	0	1	0	0	0	4046	826	29	2	567	2	CTNNA3	10	67829089	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		67829089	67705658	44	76346										
ADAMTS14	0	genome.wustl.edu	37	chr10	72520351	72520351	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gagcctcctggaaagccaacGggatcagaggaccatcagca	12	12	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	10	72520351	72520351	G	A	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	1	known	silent	c.3423	p.T1141	0.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	27	0	0	23	15	39.47	-	-	-	A	72520351	G	A	72520351	2	1	958	1	0	0	0	0	0	0	0	1	259	1103	39	1		1	ADAMTS14	10	72520351	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	4691262	72520351	63014396	45	76347										
DUSP13	0	genome.wustl.edu	37	chr10	76868889	76868889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gtggctttgtcctctcccccCagctctgggagagaggtctc	12	14	3	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	10	76868889	76868889	C	T	SNP	DUSP13	ENST00000372700	human	ensembl	69_37n	-1	known	silent	c.27	p.L9	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	56	0	0	28	17	37.78	-	-	-	T	76868889	C	T	76868889	2	4	958	1	0	0	0	0	0	0	0	1	4848	581	21	4		4	DUSP13	10	76868889	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	4348538	76868889	58665858	46	76348										
GRK5	0	genome.wustl.edu	37	chr10	121201555	121201555	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gcttggctgtgaagatccccGagggagacctgatccgcggc	15	12	0	4			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	10	121201555	121201555	G	T	SNP	GRK5	ENST00000392870	human	ensembl	69_37n	1	known	nonsense	c.1012	p.E338*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom,prints_GPCR_kinase	-	no_errors	GRK5	HGNC	ENSG00000198873	155	0	0	35	58	62.37	-	-	-	T	121201555	G	T	121201555	4	4	958	1	0	0	0	0	0	1	0	0	6843	1059	37	3	1054	3	GRK5	10	121201555	Nonsense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	44332666	121201555	14333192	47	76349										
UROS	0	genome.wustl.edu	37	chr10	127495986	127495986	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atgtttttctacttactggaAcaaatatattctgcaagctt	5	7	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	10	127495986	127495986	A	G	SNP	UROS	ENST00000368786	human	ensembl	69_37n	-1	known	silent	c.390	p.C130	0.999	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690	60	0	0	28	4	12.5	-	-	-	G	127495986	A	G	127495986	2	3	958	1	0	0	0	0	0	0	0	1	17127	41	2	5		5	UROS	10	127495986	Silent	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	6294431	127495986	8038761	48	76350										
OR9Q1	0	genome.wustl.edu	37	chr11	57947195	57947195	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gagcatggggcagctttatcTtacacacgctgtgctgctca	11	11	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	57947195	57947195	T	G	SNP	OR9Q1	ENST00000335397	human	ensembl	69_37n	1	known	silent	c.279	p.S93	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR9Q1	HGNC	ENSG00000186509	94	0	0	34	14	28.57	-	-	-	G	57947195	T	G	57947195	2	3	958	1	0	0	0	0	0	0	0	1	11328	1596	56	5		5	OR9Q1	11	57947195	Silent	SNP	T	TCGA-LQ-A4E4-01A-11D-A25Q-09		57947195	77059321	49	76351										
MS4A3	0	genome.wustl.edu	37	chr11	59828754	59828754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	accagcccatagatggatcaCcagattatcagaaagcaaaa	7	10	2	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	59828754	59828754	C	T	SNP	MS4A3	ENST00000278865	human	ensembl	69_37n	1	known	missense	c.121	p.P41S	0.001	NULL	pfam_CD20-like	-	no_errors	MS4A3	HGNC	ENSG00000149516	62	0	0	18	18	50	-	-	-	T	59828754	C	T	59828754	3	4	958	1	0	0	0	0	1	0	0	0	9933	507	18	4	123	4	MS4A3	11	59828754	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	1881559	59828754	75177762	50	76352										
ZP1	0	genome.wustl.edu	37	chr11	60642617	60642617	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ggcaggacagcgacgatcctCaggtcaccgtaatgacactg	12	12	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	60642617	60642617	C	T	SNP	ZP1	ENST00000278853	human	ensembl	69_37n	1	known	missense	c.1670	p.S557L	0.001	NULL	pfam_Zona_pellucida_Endoglin/CD105,superfamily_P_trefoil,smart_P_trefoil,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	ZP1	HGNC	ENSG00000149506	18	0	0	6	4	40	-	-	-	T	60642617	C	T	60642617	3	4	958	1	0	0	0	0	1	0	0	0	18308	838	29	2	1712	2	ZP1	11	60642617	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	813863	60642617	74363899	51	76353										
C2CD3	0	genome.wustl.edu	37	chr11	73745615	73745615	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cgttgggagctgggagtcctGgtgggcatgttcatgcttcc	16	9	1	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	73745615	73745615	G	T	SNP	C2CD3	ENST00000540452	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	C2CD3	HGNC	ENSG00000168014	44	0	0	29	4	12.12	-	-	-	T	73745615	G	T	73745615	1	4	958	0	1	0	0	0	0	0	0	0	2174	1363	47	4		4	C2CD3	11	73745615	RNA	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	13102998	73745615	61260901	52	76354										
DYNC2H1	0	genome.wustl.edu	37	chr11	103025249	103025249	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	agtagtatctctaaagatatCgagagctgtgcccaaatttg	9	7	1	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	103025249	103025249	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	1	known	missense	c.3372	p.I1124M	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	48	0	0	18	10	35.71	-	-	-	G	103025249	C	G	103025249	3	3	958	1	0	0	0	0	1	0	0	0	4881	874	31	3	3462	3	DYNC2H1	11	103025249	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	29279634	103025249	31981267	53	76355										
VPS26B	0	genome.wustl.edu	37	chr11	134115464	134115464	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ggacccccagccagctgtctGacaacaactgcaggcagtag	11	14	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	11	134115464	134115464	G	C	SNP	VPS26B	ENST00000281187	human	ensembl	69_37n	1	known	missense	c.991	p.D331H	0.996	NULL	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502	70	0	0	29	9	23.68	-	-	-	C	134115464	G	C	134115464	3	2	958	1	0	0	0	0	1	0	0	0	17295	1290	45	2	1013	2	VPS26B	11	134115464	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	31090215	134115464	891052	54	76356										
WBP11	0	genome.wustl.edu	37	chr12	14946764	14946764	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tttgtcggtgtcactgtcatCagtactgtcatcatgcttat	8	9	5	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	12	14946764	14946764	C	T	SNP	WBP11	ENST00000261167	human	ensembl	69_37n	-1	known	missense	c.814	p.D272N	1.000	NULL	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463	140	0	0	113	18	13.74	-	-	-	T	14946764	C	T	14946764	3	4	958	1	0	0	0	0	1	0	0	0	17355	826	29	2	1131	2	WBP11	12	14946764	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		14946764	118905131	55	76357										
SPRYD3	0	genome.wustl.edu	37	chr12	53468492	53468492	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cacatcaaaggacacaggctCaatgccacagccaatccggt	8	14	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	12	53468492	53468492	C	T	SNP	SPRYD3	ENST00000301463	human	ensembl	69_37n	-1	known	missense	c.448	p.E150K	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD3	HGNC	ENSG00000167778	57	0	0	16	21	56.76	-	-	-	T	53468492	C	T	53468492	3	4	958	1	0	0	0	0	1	0	0	0	15200	835	29	2	908	2	SPRYD3	12	53468492	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	38521728	53468492	80383403	56	76358										
MARS	0	genome.wustl.edu	37	chr12	57882184	57882184	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	attaccctcaatataataccCttcccttatctctctcctcc	0	17	3	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	12	57882184	57882184	C	T	SNP	MARS	ENST00000548146	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MARS	HGNC	ENSG00000166986	47	0	0	52	10	16.13	-	-	-	T	57882184	C	T	57882184	1	4	958	0	1	0	0	0	0	0	0	0	9387	696	24	4		4	MARS	12	57882184	RNA	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	4413692	57882184	75969711	57	76359										
IL25	0	genome.wustl.edu	37	chr14	23842413	23842413	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	attcttggcaatggtcatggGaacccacacctacagccact	8	13	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	14	23842413	23842413	G	A	SNP	IL25	ENST00000329715	human	ensembl	69_37n	1	known	missense	c.86	p.G29E	0.978	pfam_Interleukin-17	pfam_Interleukin-17	-	no_errors	IL25	HGNC	ENSG00000166090	96	0	0	67	26	27.96	-	-	-	A	23842413	G	A	23842413	3	1	958	1	0	0	0	0	1	0	0	0	7732	1174	41	2	101	2	IL25	14	23842413	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		23842413	83507127	58	76360										
CMTM5	0	genome.wustl.edu	37	chr14	23847889	23847889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atttcacagctgcagggccaCgggcaatcaggaggaccaca	12	12	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	14	23847889	23847889	C	T	SNP	CMTM5	ENST00000339180	human	ensembl	69_37n	1	known	silent	c.291	p.H97	0.000	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	65	0	0	41	27	39.71	-	-	-	T	23847889	C	T	23847889	2	4	958	1	0	0	0	0	0	0	0	1	3616	551	19	1		1	CMTM5	14	23847889	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	5476	23847889	83501651	59	76361										
RNF111	0	genome.wustl.edu	37	chr15	59373484	59373484	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	aggatgatgcagcatccaacGtatgttttacgtttttaaaa	8	6	0	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	15	59373484	59373484	G	A	SNP	RNF111	ENST00000434298	human	ensembl	69_37n	1	known	splice_site	c.2297+1	e7+1	1.000	-	-	-	no_errors	RNF111	HGNC	ENSG00000157450	65	0	0	12	26	68.42	-	-	-	A	59373484	G	A	59373484	5	1	958	1	0	0	0	0	0	0	1	0	13511	1159	40	1	2324	1	RNF111	15	59373484	Splice_Site	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		59373484	43157908	60	76362										
MAN2C1	0	genome.wustl.edu	37	chr15	75653437	75653437	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ttcaggcggtccagcatggtCtgggtggggccaccaccccc	14	15	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	15	75653437	75653437	C	T	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	silent	c.1410	p.Q470	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	76	0	0	49	32	39.51	-	-	-	T	75653437	C	T	75653437	2	4	958	1	0	0	0	0	0	0	0	1	9289	912	32	2		2	MAN2C1	15	75653437	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	16279953	75653437	26877955	61	76363										
PKD1	0	genome.wustl.edu	37	chr16	2143825	2143825	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ccctcaccttcagtggctccCagccgaggaatgaggccagg	12	15	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	16	2143825	2143825	C	G	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	missense	c.10808	p.W3603S	0.999	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	36	0	0	32	10	23.81	-	-	-	G	2143825	C	G	2143825	3	3	958	1	0	0	0	0	1	0	0	0	12037	595	21	4	2147	4	PKD1	16	2143825	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		2143825	88210928	62	76364										
CDH1	0	genome.wustl.edu	37	chr16	68847304	68847304	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgcccccaataccccagcgtGggaggctgtatacaccatat	9	14	0	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	16	68847304	68847304	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1226	p.W409*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	74	0	0	21	35	62.5	-	-	-	A	68847304	G	A	68847304	4	1	958	1	0	0	0	0	0	1	0	0	3124	1357	47	4	1260	4	CDH1	16	68847304	Nonsense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	66703479	68847304	21507449	63	76365										
PDPR	0	genome.wustl.edu	37	chr16	70165273	70165273	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ctacatgcctgcgaacacttCtacctcctgactcgcccctt	5	18	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	16	70165273	70165273	C	G	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	1	known	missense	c.798	p.F266L	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	163	0	0	60	42	41.18	-	-	-	G	70165273	C	G	70165273	3	3	958	1	0	0	0	0	1	0	0	0	11762	912	32	2	820	2	PDPR	16	70165273	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	1317969	70165273	20189480	64	76366										
MC1R	0	genome.wustl.edu	37	chr16	89980978	89980981	+	RNA	DEL	GTGG	GTGG	-													0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	gtgtgtgtgcgcctgtgtgtGtgggtgcctgtgtgtgtgtg							TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	GTGG	GTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	16	89980978	89980981	GTGG	-	DEL	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.786:0.744:0.728:0.694	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	40	0	0	10	2	16.67	-	-	-	-	89980981	GTGG	-	89980978	6	5	958	0	1	1	0	1	0	0	0	0	9434	1392	48	0		0	MC1R	16	89980978	RNA	DEL	GTGG	TCGA-LQ-A4E4-01A-11D-A25Q-09	19815705	89980978	373775	65	76367										
MC1R	0	genome.wustl.edu	37	chr16	89981125	89981126	+	RNA	INS	-	-	TG													0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tgtgtgtgggggtgcacattINStgtgtgtgtgtgtgcctgtg							TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	16	89981125	89981126	-	TG	INS	MC1R	ENST00000539976	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.616:0.614	-	-	-	no_errors	MC1R	HGNC	ENSG00000258839	93	0	0	35	5	12.5	-	-	-	TG	89981126	-	TG	89981125	6	5	958	0	1	1	1	0	0	0	0	0	9434	1856	64	0		0	MC1R	16	89981125	RNA	INS	-	TCGA-LQ-A4E4-01A-11D-A25Q-09	147	89981125	373628	66	76368										
GAS7	0	genome.wustl.edu	37	chr17	9843517	9843517	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tagtcttcttcaatctttatCctgcaaagagagaaaaccca	5	10	4	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	17	9843517	9843517	C	G	SNP	GAS7	ENST00000432992	human	ensembl	69_37n	-1	known	missense	c.732	p.R244S	1.000	pfam_FCH,smart_FCH,pfscan_FCH	pfam_FCH,pfam_WW_Rsp5_WWP,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_FCH,pfscan_FCH,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP	-	no_errors	GAS7	HGNC	ENSG00000007237	93	0	0	35	7	16.67	-	-	-	G	9843517	C	G	9843517	3	3	958	1	0	0	0	0	1	0	0	0	6300	869	30	2	726	2	GAS7	17	9843517	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		9843517	71351693	67	76369										
VPS25	0	genome.wustl.edu	37	chr17	40931001	40931001	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	acgggctggatgaagccactCtactgcgggctctgcaggcc	14	13	2	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	17	40931001	40931001	C	G	SNP	VPS25	ENST00000253794	human	ensembl	69_37n	1	known	missense	c.445	p.L149V	1.000	NULL	pfam_ESCRT-II_cplx_vps25-sub	-	no_errors	VPS25	HGNC	ENSG00000131475	64	0	0	17	29	63.04	-	-	-	G	40931001	C	G	40931001	3	3	958	1	0	0	0	0	1	0	0	0	17293	912	32	2	467	2	VPS25	17	40931001	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	31087484	40931001	40264209	68	76370										
BRCA1	0	genome.wustl.edu	37	chr17	41244479	41244479	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ttattacggctaattgtgctCactgtacttggaatgttctc	8	8	2	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	17	41244479	41244479	C	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	silent	c.3069	p.V1023	0.009	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	93	0	0	29	31	51.67	-	-	-	T	41244479	C	T	41244479	2	4	958	1	0	0	0	0	0	0	0	1	1506	813	29	2		2	BRCA1	17	41244479	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	313478	41244479	39950731	69	76371										
HOXB5	0	genome.wustl.edu	37	chr17	46670817	46670817	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ggctcctgggcgggcgcgggGaaggcgcgcgagctctcgcc	20	14	1	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	17	46670817	46670817	G	A	SNP	HOXB5	ENST00000239151	human	ensembl	69_37n	-1	known	silent	c.228	p.F76	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075	43	0	0	45	14	23.73	-	-	-	A	46670817	G	A	46670817	2	1	958	1	0	0	0	0	0	0	0	1	7355	1165	41	2		2	HOXB5	17	46670817	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	5426338	46670817	34524393	70	76372										
CD97	0	genome.wustl.edu	37	chr19	14507268	14507268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cttcaagttcatacctgaggAtccgaaggtctgcacaggta	10	10	3	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	19	14507268	14507268	A	G	SNP	CD97	ENST00000242786	human	ensembl	69_37n	1	known	missense	c.461	p.D154G	0.003	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd,pfam_GPS_dom,pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146	154	0	0	108	46	29.68	-	-	-	G	14507268	A	G	14507268	3	3	958	1	0	0	0	0	1	0	0	0	3078	333	12	5	479	5	CD97	19	14507268	Missense_Mutation	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09		14507268	44621715	71	76373										
RPL18A	0	genome.wustl.edu	37	chr19	17972988	17972988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cggcacccacaacatgtaccGggaataccgggacctgacca	10	15	0	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	19	17972988	17972988	G	A	SNP	RPL18A	ENST00000222247	human	ensembl	69_37n	1	known	missense	c.284	p.R95Q	1.000	pfam_Ribosomal_L18a/LX	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640	89	0	0	72	35	32.71	-	-	-	A	17972988	G	A	17972988	3	1	958	1	0	0	0	0	1	0	0	0	13651	1116	39	1	294	1	RPL18A	19	17972988	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09	3465720	17972988	41155995	72	76374										
GMIP	0	genome.wustl.edu	37	chr19	19740898	19740898	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atctcaaaatgcttgggcagCggggtgcggcgcagggggct	18	9	1	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	19	19740898	19740898	C	T	SNP	GMIP	ENST00000203556	human	ensembl	69_37n	-1	known	silent	c.2787	p.P929	0.003	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	59	0	0	37	23	38.33	-	-	-	T	19740898	C	T	19740898	2	4	958	1	0	0	0	0	0	0	0	1	6543	755	27	1		1	GMIP	19	19740898	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	1767910	19740898	39388085	73	76375										
ZNF814	0	genome.wustl.edu	37	chr19	58385913	58385913	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tctgatgattactgaagctaAcatatttgctaaaggatttc	7	6	1	3			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	19	58385913	58385913	A	G	SNP	ZNF814	ENST00000435989	human	ensembl	69_37n	-1	known	missense	c.845	p.V282A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514	69	0	0	52	10	16.13	-	-	-	G	58385913	A	G	58385913	3	3	958	1	0	0	0	0	1	0	0	0	18269	43	2	5	1726	5	ZNF814	19	58385913	Missense_Mutation	SNP	A	TCGA-LQ-A4E4-01A-11D-A25Q-09	38645015	58385913	743070	74	76376										
JPH2	0	genome.wustl.edu	37	chr20	42788490	42788490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	cagccactcgccctcgtagcGgaggccactggagcgttcgc	13	16	0	0			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	20	42788490	42788490	G	A	SNP	JPH2	ENST00000372980	human	ensembl	69_37n	-1	known	missense	c.937	p.R313C	1.000	smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596	77	0	0	50	23	31.51	-	-	-	A	42788490	G	A	42788490	3	1	958	1	0	0	0	0	1	0	0	0	8015	1116	39	1	1169	1	JPH2	20	42788490	Missense_Mutation	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		42788490	20237030	75	76377										
TPTE	0	genome.wustl.edu	37	chr21	10916377	10916377	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	ataaagcacttacgaggaatCgaataaataatgaagtgttt	8	4	0	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	21	10916377	10916377	C	T	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	silent	c.1269	p.S423	0.795	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	208	0	0	111	36	24.49	-	-	-	T	10916377	C	T	10916377	2	4	958	1	0	0	0	0	0	0	0	1	16526	871	31	1		1	TPTE	21	10916377	Silent	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		10916377	37213518	76	76378										
TTC3	0	genome.wustl.edu	37	chr21	38538480	38538480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	caggatactgtacgtatcttCctttccagagatttgatatc	7	9	1	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	21	38538480	38538480	C	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	1	known	missense	c.3964	p.P1322S	0.837	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	91	0	0	66	39	37.14	-	-	-	T	38538480	C	T	38538480	3	4	958	1	0	0	0	0	1	0	0	0	16794	855	30	2	4090	2	TTC3	21	38538480	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	27622103	38538480	9591415	77	76379										
SBF1	0	genome.wustl.edu	37	chr22	50903481	50903481	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	accccacgctctgacacaaaGccagcaaaggccatgccctc	7	18	1	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	22	50903481	50903481	G	T	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	silent	c.1281	p.G427	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	58	0	0	34	4	10.53	-	-	-	T	50903481	G	T	50903481	2	4	958	1	0	0	0	0	0	0	0	1	13945	958	34	4		4	SBF1	22	50903481	Silent	SNP	G	TCGA-LQ-A4E4-01A-11D-A25Q-09		50903481	401085	78	76380										
DGKK	0	genome.wustl.edu	37	chrX	50135384	50135384	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	atcagagataagacccagctCacgctgccatctccaccaca	6	16	3	2			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	X	50135384	50135384	C	T	SNP	DGKK	ENST00000376025	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	86	0	0	35	7	16.67	-	-	-	T	50135384	C	T	50135384	1	4	958	0	1	0	0	0	0	0	0	0	4508	813	29	2		2	DGKK	23	50135384	RNA	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09		50135384	105135176	79	76381										
XKRX	0	genome.wustl.edu	37	chrX	100169375	100169375	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.3125	25	9.73539830549261e-07	3.06290064102564	3.43044871794872	2.94038461538462	0.00821403380534051	0.116425000893087	17	tcaaagggtggctctgagttCtcaaccctggtccgagggtg	14	10	3	1			TCGA-LQ-A4E4-01A-11D-A25Q-09	TCGA-LQ-A4E4-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7043c94f-65c4-4e87-b124-b6fe5b26a5c6	2aa15aea-b63c-4460-9211-586b8a360c8d	X	100169375	100169375	C	G	SNP	XKRX	ENST00000328526	human	ensembl	69_37n	-1	known	missense	c.1341	p.E447D	0.039	NULL	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489	71	0	0	46	6	11.54	-	-	-	G	100169375	C	G	100169375	3	3	958	1	0	0	0	0	1	0	0	0	17536	912	32	2	51	2	XKRX	23	100169375	Missense_Mutation	SNP	C	TCGA-LQ-A4E4-01A-11D-A25Q-09	50033991	100169375	55101185	80	76382										
CAPN13	0	genome.wustl.edu	37	chr2	30968593	30968593	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	cgacgctgagccatacctgtGagccagcctgttggaaacag	12	12	0	2			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	2	30968593	30968593	G	A	SNP	CAPN13	ENST00000295055	human	ensembl	69_37n	-1	known	missense	c.1244	p.S415L	0.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	54	0	0	54	7	11.48	-	-	-	A	30968593	G	A	30968593	3	1	959	1	0	0	0	0	1	0	0	0	2651	1305	45	2		2	CAPN13	2	30968593	Missense_Mutation	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		30968593	212230780	1	76383										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0	39	8	17.02	-	-	-	A	178921553	T	A	178921553	3	1	959	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-MS-A51U-01A-31D-A25Q-09		178921553	19100877	2	76384										
MUC20	0	genome.wustl.edu	37	chr3	195453014	195453014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	aaagagaagtgacagcacccGgggccacgaccctcagtgga	13	12	1	2			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	3	195453014	195453014	G	A	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	1	known	missense	c.1540	p.G514R	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	37	0	0	19	7	25.93	-	-	-	A	195453014	G	A	195453014	3	1	959	1	0	0	0	0	1	0	0	0	10048	1116	39	1	1037	1	MUC20	3	195453014	Missense_Mutation	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09	16531461	195453014	2569416	3	76385										
FAT4	0	genome.wustl.edu	37	chr4	126372852	126372852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ccaccagttatttcagtctgAgcactgctggagttctgagc	10	11	3	2			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	4	126372852	126372852	A	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	1	known	missense	c.10681	p.S3561G	0.728	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	90	0	0	64	12	15.79	-	-	-	G	126372852	A	G	126372852	3	3	959	1	0	0	0	0	1	0	0	0	5738	304	11	5	10715	5	FAT4	4	126372852	Missense_Mutation	SNP	A	TCGA-MS-A51U-01A-31D-A25Q-09		126372852	64781424	4	76386										
ARHGEF37	0	genome.wustl.edu	37	chr5	149008411	149008411	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ggctgggaaactacagctgtAccatgtggtccccagtgcag	13	11	0	0			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	5	149008411	149008411	A	G	SNP	ARHGEF37	ENST00000333677	human	ensembl	69_37n	1	known	missense	c.1700	p.Y567C	0.554	superfamily_SH3_domain,smart_SH3_domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111	57	0	0	36	8	18.18	-	-	-	G	149008411	A	G	149008411	3	3	959	1	0	0	0	0	1	0	0	0	908	391	14	5	1742	5	ARHGEF37	5	149008411	Missense_Mutation	SNP	A	TCGA-MS-A51U-01A-31D-A25Q-09		149008411	31906849	5	76387										
DSE	0	genome.wustl.edu	37	chr6	116756765	116756765	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ttcaggtatgatggcagcttGaaatcggttcctcctccaga	10	10	1	3			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	6	116756765	116756765	G	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	1	known	silent	c.1191	p.L397	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	37	0	0	26	4	13.33	-	-	-	A	116756765	G	A	116756765	2	1	959	1	0	0	0	0	0	0	0	1	4809	1281	45	2		2	DSE	6	116756765	Silent	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		116756765	54358302	6	76388										
ADCK2	0	genome.wustl.edu	37	chr7	140373767	140373767	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	tgggctcaggctgcgtggccCaggtgtacaaagcatacgcc	14	12	1	0			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	7	140373767	140373767	C	T	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	1	known	nonsense	c.637	p.Q213*	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	56	0	0	38	6	13.64	-	-	-	T	140373767	C	T	140373767	4	4	959	1	0	0	0	0	0	1	0	0	289	595	21	4	639	4	ADCK2	7	140373767	Nonsense_Mutation	SNP	C	TCGA-MS-A51U-01A-31D-A25Q-09		140373767	18764896	7	76389										
PDLIM2	0	genome.wustl.edu	37	chr8	22451688	22451688	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	tttgatcaacctttgtgtgcGagggtctaagtagggtcgaa	13	6	2	1			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	8	22451688	22451688	G	C	SNP	PDLIM2	ENST00000443561	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDLIM2	HGNC	ENSG00000120913	9	0	0	1	4	80	-	-	-	C	22451688	G	C	22451688	1	2	959	0	1	0	0	0	0	0	0	0	11753	1073	37	3		3	PDLIM2	8	22451688	RNA	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		22451688	123912334	8	76390										
RB1CC1	0	genome.wustl.edu	37	chr8	53568768	53568768	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ttctcaaggttctggataatAgcttcgtatttctcttcttg	7	8	4	0			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	8	53568768	53568768	A	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.3621	p.A1207	0.994	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	106	0	0	66	8	10.81	-	-	-	G	53568768	A	G	53568768	2	3	959	1	0	0	0	0	0	0	0	1	13182	407	15	5		5	RB1CC1	8	53568768	Silent	SNP	A	TCGA-MS-A51U-01A-31D-A25Q-09	31117080	53568768	92795254	9	76391										
ANKRD22	0	genome.wustl.edu	37	chr10	90583107	90583107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	gagactggtttttcatttcaCaggcataatgtaatgcggta	10	6	2	1			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	10	90583107	90583107	C	T	SNP	ANKRD22	ENST00000371930	human	ensembl	69_37n	-1	known	missense	c.428	p.C143Y	0.995	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766	47	0	0	37	5	11.9	-	-	-	T	90583107	C	T	90583107	3	4	959	1	0	0	0	0	1	0	0	0	651	478	17	4	155	4	ANKRD22	10	90583107	Missense_Mutation	SNP	C	TCGA-MS-A51U-01A-31D-A25Q-09		90583107	44951640	10	76392										
WSCD2	0	genome.wustl.edu	37	chr12	108604028	108604028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	gaggcagcgtgtgcggcggcGccaaccgcctctctgtctac	14	15	2	0			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	12	108604028	108604028	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	1	known	missense	c.628	p.A210T	0.983	smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	29	0	0	22	6	21.43	-	-	-	A	108604028	G	A	108604028	3	1	959	1	0	0	0	0	1	0	0	0	17504	1087	38	1	638	1	WSCD2	12	108604028	Missense_Mutation	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		108604028	25247867	11	76393										
SACS	0	genome.wustl.edu	37	chr13	23914806	23914806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	ctgagggtgggaaataggttCcttcttcattacaaaagaga	11	6	2	2			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	13	23914806	23914806	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.3209	p.G1070E	0.977	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	72	0	0	33	9	21.43	-	-	-	T	23914806	C	T	23914806	3	4	959	1	0	0	0	0	1	0	0	0	13890	855	30	2	10534	2	SACS	13	23914806	Missense_Mutation	SNP	C	TCGA-MS-A51U-01A-31D-A25Q-09		23914806	91255072	12	76394										
CDH24	0	genome.wustl.edu	37	chr14	23516833	23516833	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	cagagcatgtgtatgggcaaGgaagacgcagggagactatg	16	6	0	3			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	14	23516833	23516833	G	T	SNP	CDH24	ENST00000485922	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.250	-	-	-	no_errors	CDH24	HGNC	ENSG00000139880	25	0	0	22	4	15.38	-	-	-	T	23516833	G	T	23516833	1	4	959	0	1	0	0	0	0	0	0	0	3138	1015	35	4		4	CDH24	14	23516833	RNA	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		23516833	83832707	13	76395										
CDH1	0	genome.wustl.edu	37	chr16	68849436	68849436	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	agggcttggattttgaggccAagcagcagtacattctacac	11	9	1	1			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	16	68849436	68849436	A	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1339	p.K447*	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	102	0	0	62	16	20.51	-	-	-	T	68849436	A	T	68849436	4	4	959	1	0	0	0	0	0	1	0	0	3124	131	5	5	1377	5	CDH1	16	68849436	Nonsense_Mutation	SNP	A	TCGA-MS-A51U-01A-31D-A25Q-09		68849436	21505317	14	76396										
RPL23A	0	genome.wustl.edu	37	chr17	27047044	27047044	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	atggcgccgaaagcgaagaaGgaaggtgtgtgttggtgatg	18	4	0	2			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	17	27047044	27047044	G	A	SNP	RPL23A	ENST00000422514	human	ensembl	69_37n	1	known	silent	c.21	p.K7	1.000	NULL	pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	-	no_errors	RPL23A	HGNC	ENSG00000198242	47	0	0	39	11	22	-	-	-	A	27047044	G	A	27047044	2	1	959	1	0	0	0	0	0	0	0	1	13657	991	35	4		4	RPL23A	17	27047044	Silent	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09		27047044	54148166	15	76397										
HOXB5	0	genome.wustl.edu	37	chr17	46669748	46669748	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	tagcggttgaagtggaactcCttttccagctccagggtctg	12	10	1	1			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	17	46669748	46669748	C	A	SNP	HOXB5	ENST00000239151	human	ensembl	69_37n	-1	known	missense	c.633	p.K211N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075	152	0	0	97	15	13.39	-	-	-	A	46669748	C	A	46669748	3	1	959	1	0	0	0	0	1	0	0	0	7355	680	24	4	180	4	HOXB5	17	46669748	Missense_Mutation	SNP	C	TCGA-MS-A51U-01A-31D-A25Q-09	19622704	46669748	34525462	16	76398										
SRC	0	genome.wustl.edu	37	chr20	36033505	36033505	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	gaaatttcaacttttcctttCatacgtctttattacccaag	3	10	3	0			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	20	36033505	36033505	C	T	SNP	SRC	ENST00000477066	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	53	0	0	53	6	10.17	-	-	-	T	36033505	C	T	36033505	1	4	959	0	1	0	0	0	0	0	0	0	15225	841	29	2		2	SRC	20	36033505	RNA	SNP	C	TCGA-MS-A51U-01A-31D-A25Q-09		36033505	26992015	17	76399										
OGFR	0	genome.wustl.edu	37	chr20	61444665	61444665	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.166666666666667	3	0.407996246058386	2.21663442940039	0	2.43829787234043	0.1	0.5224358974359	0	gagaccccaggcccccgcccGgcaggacctgcaggggacga	15	17	0	1			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	20	61444665	61444665	G	A	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	1	known	silent	c.1698	p.P566	0.000	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	19	0	0	17	9	34.62	-	-	-	A	61444665	G	A	61444665	2	1	959	1	0	0	0	0	0	0	0	1	10916	1103	39	1		1	OGFR	20	61444665	Silent	SNP	G	TCGA-MS-A51U-01A-31D-A25Q-09	25411160	61444665	1580855	18	76400										
CD1E	0	genome.wustl.edu	37	chr1	158326377	158326377	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ttgactcacggttaaaaaaaCagaggtgagctttttcttgt	9	6	2	3			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	1	158326377	158326377	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	1	known	nonsense	c.994	p.Q332*	0.011	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	61	0	0	54	13	19.4	-	-	-	T	158326377	C	T	158326377	4	4	960	1	0	0	0	0	0	1	0	0	3007	479	17	4	1012	4	CD1E	1	158326377	Nonsense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		158326377	90924244	1	76401										
OR10J1	0	genome.wustl.edu	37	chr1	159409829	159409829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	cattctcccaagaatgctctCcagcctcgtaggtatgagcc	8	14	2	2			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	1	159409829	159409829	C	T	SNP	OR10J1	ENST00000423932	human	ensembl	69_37n	1	known	missense	c.281	p.S94F	0.012	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	83	0	0	69	19	21.59	-	-	-	T	159409829	C	T	159409829	3	4	960	1	0	0	0	0	1	0	0	0	10983	855	30	2	283	2	OR10J1	1	159409829	Missense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09	1083452	159409829	89840792	2	76402										
RGS7	0	genome.wustl.edu	37	chr1	240990425	240990425	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gttttgtgggggtttctcatTctggatgacttcttaatgtc	11	6	3	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	1	240990425	240990425	T	G	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	missense	c.657	p.R219S	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	68	0	0	70	19	21.35	-	-	-	G	240990425	T	G	240990425	3	3	960	1	0	0	0	0	1	0	0	0	13394	1780	62	5	842	5	RGS7	1	240990425	Missense_Mutation	SNP	T	TCGA-OK-A5Q2-01A-11D-A27P-09	81580596	240990425	8260196	3	76403										
QRICH1	0	genome.wustl.edu	37	chr3	49084617	49084617	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ttcaaagaatttggaagcagAagttctggggaaggctgtgg	15	4	2	2			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	3	49084617	49084617	A	G	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	silent	c.1401	p.L467	0.998	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	51	0	0	28	4	12.5	-	-	-	G	49084617	A	G	49084617	2	3	960	1	0	0	0	0	0	0	0	1	12962	233	9	5		5	QRICH1	3	49084617	Silent	SNP	A	TCGA-OK-A5Q2-01A-11D-A27P-09		49084617	148937813	4	76404										
UROC1	0	genome.wustl.edu	37	chr3	126224610	126224610	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	tgagccccactcattccgccGagcccagaggtgacaaagac	10	15	1	4			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	3	126224610	126224610	G	A	SNP	UROC1	ENST00000290868	human	ensembl	69_37n	-1	known	silent	c.747	p.L249	0.687	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	pfam_Urocanase_dom,superfamily_Urocanase_dom,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	57	0	0	47	8	14.55	-	-	-	A	126224610	G	A	126224610	2	1	960	1	0	0	0	0	0	0	0	1	17125	1045	37	1		1	UROC1	3	126224610	Silent	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09	77139993	126224610	71797820	5	76405										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	19	0	0	16	5	23.81	-	-	-	G	178952085	A	G	178952085	3	3	960	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-OK-A5Q2-01A-11D-A27P-09	52727475	178952085	19070345	6	76406										
FAT1	0	genome.wustl.edu	37	chr4	187541477	187541477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	cagtgtccactttaacaacgGcgtagtagggaaggttgaca	12	8	0	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	4	187541477	187541477	G	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.6263	p.A2088V	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	53	0	0	38	7	15.56	-	-	-	A	187541477	G	A	187541477	3	1	960	1	0	0	0	0	1	0	0	0	5735	1203	42	4	7575	4	FAT1	4	187541477	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		187541477	3612799	7	76407										
SPEF2	0	genome.wustl.edu	37	chr5	35654760	35654760	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ttgaagaagatgcttttgcaCgagagcaaagggagaaaaga	13	4	0	6			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	5	35654760	35654760	C	T	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	1	known	nonsense	c.910	p.R304*	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	26	0	0	27	4	12.9	-	-	-	T	35654760	C	T	35654760	4	4	960	1	0	0	0	0	0	1	0	0	15126	528	19	1	936	1	SPEF2	5	35654760	Nonsense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		35654760	145260500	8	76408										
MAP3K1	0	genome.wustl.edu	37	chr5	56168740	56168740	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	agcagcctttggctggatcaCgaaggaatcaagagagcaat	12	8	2	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	5	56168740	56168740	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	1	novel	nonsense	c.1594	p.R532*	0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	35	0	0	21	9	30	-	-	-	T	56168740	C	T	56168740	4	4	960	1	0	0	0	0	0	1	0	0	9314	528	19	1	1628	1	MAP3K1	5	56168740	Nonsense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09	20513980	56168740	124746520	9	76409										
PTCD2	0	genome.wustl.edu	37	chr5	71654103	71654103	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	tgatgagatctatgggacacTgcacatcactggccaggtca	11	10	3	2			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	5	71654103	71654103	T	C	SNP	PTCD2	ENST00000308077	human	ensembl	69_37n	1	known	missense	c.1016	p.L339P	0.960	NULL	pfam_Ribosomal_S27_mit,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD2	HGNC	ENSG00000049883	29	0	0	24	5	17.24	-	-	-	C	71654103	T	C	71654103	3	2	960	1	0	0	0	0	1	0	0	0	12808	1580	55	5	1054	5	PTCD2	5	71654103	Missense_Mutation	SNP	T	TCGA-OK-A5Q2-01A-11D-A27P-09	15485363	71654103	109261157	10	76410										
CDYL	0	genome.wustl.edu	37	chr6	4937916	4937916	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ttgactttatttattttataCgacgtctgacagatgacagg	8	6	1	4			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	6	4937916	4937916	C	T	SNP	CDYL	ENST00000328908	human	ensembl	69_37n	1	known	nonsense	c.1228	p.R410*	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	51	0	0	41	7	14.58	-	-	-	T	4937916	C	T	4937916	4	4	960	1	0	0	0	0	0	1	0	0	3214	528	19	1	1080	1	CDYL	6	4937916	Nonsense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		4937916	166177151	11	76411										
EGFL8	0	genome.wustl.edu	37	chr6	32135279	32135279	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gaggcatctcttcctttctaGtgggccggtcaggctggggc	15	11	3	0			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	6	32135279	32135279	G	A	SNP	EGFL8	ENST00000422437	human	ensembl	69_37n	1	known	splice_site	c.906-1	e10-1	1.000	-	-	-	no_errors	XXbac-BPG300A18.12	Clone_based_vega_gene	ENSG00000258388	10	0	0	11	4	26.67	-	-	-	A	32135279	G	A	32135279	5	1	960	1	0	0	0	0	0	0	1	0	5000	1043	36	4	707	4	EGFL8	6	32135279	Splice_Site	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09	27197363	32135279	138979788	12	76412										
GLP1R	0	genome.wustl.edu	37	chr6	39033993	39033993	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	agctccccggaggagcagctCctgttcctctacatcatcta	8	15	3	0			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	6	39033993	39033993	C	G	SNP	GLP1R	ENST00000373256	human	ensembl	69_37n	1	known	silent	c.423	p.L141	0.998	prints_GPCR_2_GLP1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	-	no_errors	GLP1R	HGNC	ENSG00000112164	67	0	0	51	24	32	-	-	-	G	39033993	C	G	39033993	2	3	960	1	0	0	0	0	0	0	0	1	6504	842	30	2		2	GLP1R	6	39033993	Silent	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09	6898714	39033993	132081074	13	76413										
MDN1	0	genome.wustl.edu	37	chr6	90371925	90371925	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gtttgaattgccactatccaAgttgtcatctttagcaacaa	6	9	2	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	6	90371925	90371925	A	C	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.14446	p.L4816V	0.978	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	52	0	0	42	12	22.22	-	-	-	C	90371925	A	C	90371925	3	2	960	1	0	0	0	0	1	0	0	0	9486	69	3	5	2408	5	MDN1	6	90371925	Missense_Mutation	SNP	A	TCGA-OK-A5Q2-01A-11D-A27P-09	51337932	90371925	80743142	14	76414										
TRIM55	0	genome.wustl.edu	37	chr8	67049371	67049371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gccatcctcgtgggcagcaaCgatcgagtccagggagtgat	14	11	0	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	8	67049371	67049371	C	T	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	1	known	silent	c.549	p.N183	0.834	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	43	0	0	29	9	23.68	-	-	-	T	67049371	C	T	67049371	2	4	960	1	0	0	0	0	0	0	0	1	16625	535	19	1		1	TRIM55	8	67049371	Silent	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		67049371	79314651	15	76415										
SHARPIN	0	genome.wustl.edu	37	chr8	145162933	145162933	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	tcgaggacctgaggctgtagGtggcagaacttccagttcct	13	10	0	2			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	8	145162933	145162933	G	T	SNP	SHARPIN	ENST00000533184	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	SHARPIN	HGNC	ENSG00000179526	50	0	0	36	7	16.28	-	-	-	T	145162933	G	T	145162933	1	4	960	0	1	0	0	0	0	0	0	0	14356	1276	44	4		4	SHARPIN	8	145162933	RNA	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09	78113562	145162933	1201089	16	76416										
DENND1A	0	genome.wustl.edu	37	chr9	126554879	126554879	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	tccgaacctggtcactgtagTcctccgggaattgcctctgc	10	14	2	0			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	9	126554879	126554879	T	A	SNP	DENND1A	ENST00000373624	human	ensembl	69_37n	-1	known	missense	c.119	p.D40V	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522	45	0	0	29	5	14.71	-	-	-	A	126554879	T	A	126554879	3	1	960	1	0	0	0	0	1	0	0	0	4462	1667	58	5	3097	5	DENND1A	9	126554879	Missense_Mutation	SNP	T	TCGA-OK-A5Q2-01A-11D-A27P-09		126554879	14658552	17	76417										
TRIM3	0	genome.wustl.edu	37	chr11	6477810	6477810	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	actagctcatatgtgccattCttgtggtccaccactggcac	8	13	2	0			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	11	6477810	6477810	C	A	SNP	TRIM3	ENST00000345851	human	ensembl	69_37n	-1	known	missense	c.1146	p.K382N	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171	21	0	0	12	3	20	-	-	-	A	6477810	C	A	6477810	3	1	960	1	0	0	0	0	1	0	0	0	16600	912	32	2	1116	2	TRIM3	11	6477810	Missense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		6477810	128528706	18	76418										
TMEM106C	0	genome.wustl.edu	37	chr12	48360468	48360468	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ctggtatcttattttcaggtGaattttaccgggaaggccga	11	7	2	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	12	48360468	48360468	G	A	SNP	TMEM106C	ENST00000547682	human	ensembl	69_37n	1	putative	missense	c.157	p.E53K	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM106C	HGNC	ENSG00000134291	36	0	0	33	6	15.38	-	-	-	A	48360468	G	A	48360468	3	1	960	1	0	0	0	0	1	0	0	0	16117	1277	45	2	573	2	TMEM106C	12	48360468	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		48360468	85491427	19	76419										
RIC8B	0	genome.wustl.edu	37	chr12	107236511	107236511	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gctgagaaagaaacagttttGaaaaacaataccatggtata	8	5	0	3			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	12	107236511	107236511	G	T	SNP	RIC8B	ENST00000392837	human	ensembl	69_37n	1	known	missense	c.981	p.L327F	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785	33	0	0	23	3	11.54	-	-	-	T	107236511	G	T	107236511	3	4	960	1	0	0	0	0	1	0	0	0	13440	1281	45	2	999	2	RIC8B	12	107236511	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09	58876043	107236511	26615384	20	76420										
FOXA1	0	genome.wustl.edu	37	chr14	38061461	38061461	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	atggccatggtgatgagcgaGatgtacgagtagggcggctt	17	6	0	3			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	14	38061461	38061461	G	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.528	p.I176M	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	93	0	0	67	15	18.29	-	-	-	C	38061461	G	C	38061461	3	2	960	1	0	0	0	0	1	0	0	0	6035	932	33	2	894	2	FOXA1	14	38061461	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		38061461	69288079	21	76421										
UNC45A	0	genome.wustl.edu	37	chr15	91496400	91496400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	cacaggtgcaggacctcttcGaagcccagggcaatgaccga	12	13	1	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	15	91496400	91496400	G	A	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	1	known	missense	c.2437	p.E813K	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	28	0	0	20	5	20	-	-	-	A	91496400	G	A	91496400	3	1	960	1	0	0	0	0	1	0	0	0	17085	1059	37	1	2511	1	UNC45A	15	91496400	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		91496400	11034992	22	76422										
TPSB2	0	genome.wustl.edu	37	chr16	1279438	1279438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ccgcagttgcaccctgagggCggccagatccttgacgtccc	12	16	0	3			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	16	1279438	1279438	C	T	SNP	TPSB2	ENST00000430512	human	ensembl	69_37n	-1	known	missense	c.253	p.A85T	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSB2	HGNC	ENSG00000197253	9	0	0	1	3	75	-	-	-	T	1279438	C	T	1279438	3	4	960	1	0	0	0	0	1	0	0	0	16520	768	27	1	587	1	TPSB2	16	1279438	Missense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09		1279438	89075315	23	76423										
CEP192	0	genome.wustl.edu	37	chr18	13055944	13055944	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ctgatacaagaaaagcaactGaaactacttctctgagtagc	7	9	1	4			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	18	13055944	13055944	G	T	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	1	known	nonsense	c.3355	p.E1119*	0.046	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	27	0	0	17	3	15	-	-	-	T	13055944	G	T	13055944	4	4	960	1	0	0	0	0	0	1	0	0	3280	1291	45	2	3425	2	CEP192	18	13055944	Nonsense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		13055944	65021304	24	76424										
DSG2	0	genome.wustl.edu	37	chr18	29098201	29098201	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	tcaaataattttattttacaGatctgctttaacgttggaag	6	5	2	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	18	29098201	29098201	G	T	SNP	DSG2	ENST00000261590	human	ensembl	69_37n	1	known	splice_site	c.46-1	e2-1	1.000	-	-	-	no_errors	DSG2	HGNC	ENSG00000046604	52	0	0	32	4	11.11	-	-	-	T	29098201	G	T	29098201	5	4	960	1	0	0	0	0	0	0	1	0	4812	956	33	2	51	2	DSG2	18	29098201	Splice_Site	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09	16042257	29098201	48979047	25	76425										
GRIK1	0	genome.wustl.edu	37	chr21	31066223	31066223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	gaaaatagttacctctccgcGaggcttcaaaactatcaaaa	6	10	3	0			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	21	31066223	31066223	G	A	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.278	p.S93L	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	36	0	0	33	10	23.26	-	-	-	A	31066223	G	A	31066223	3	1	960	1	0	0	0	0	1	0	0	0	6824	1059	37	1	2702	1	GRIK1	21	31066223	Missense_Mutation	SNP	G	TCGA-OK-A5Q2-01A-11D-A27P-09		31066223	17063672	26	76426										
ZXDB	0	genome.wustl.edu	37	chrX	57619454	57619455	+	Frame_Shift_Ins	INS	-	-	T													0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	ttacaagctcaagaggcaccINStgcagtcgcacgacaaactg							TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	X	57619454	57619455	-	T	INS	ZXDB	ENST00000374888	human	ensembl	69_37n	1	known	frame_shift_ins	c.973_974	p.Q326fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	64	0	0	49	9	15.52	-	-	-	T	57619455	-	T	57619454	7	5	960	1	0	1	1	0	0	0	0	0	18342	680	24	0	975	0	ZXDB	23	57619454	Frame_Shift_Ins	INS	-	TCGA-OK-A5Q2-01A-11D-A27P-09		57619454	97651106	27	76427										
KIF4A	0	genome.wustl.edu	37	chrX	69615826	69615826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0714285714285714	2	0.987712295450081	0.741666666666667	2.96666666666667	0.423809523809524	1	1	0	cattctcccttactgaagtgCgtggtcaagtttcggagtca	10	10	3	1			TCGA-OK-A5Q2-01A-11D-A27P-09	TCGA-OK-A5Q2-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02b5a2c4-832d-4c8b-b4f2-be0566eb6677	2edb9fb8-7415-47ba-a52b-95925bfa3677	X	69615826	69615826	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	1	known	missense	c.2416	p.R806C	0.017	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	52	0	0	31	6	16.22	-	-	-	T	69615826	C	T	69615826	3	4	960	1	0	0	0	0	1	0	0	0	8355	768	27	1	2498	1	KIF4A	23	69615826	Missense_Mutation	SNP	C	TCGA-OK-A5Q2-01A-11D-A27P-09	11996372	69615826	85654734	28	76428										
SKI	0	genome.wustl.edu	37	chr1	2160849	2160849	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gctgggcctggagctcagcgAgcgcagcgtccgcgtgtacc	16	14	1	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	2160849	2160849	A	T	SNP	SKI	ENST00000378536	human	ensembl	69_37n	1	known	missense	c.644	p.E215V	1.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933	31	0	0	30	8	21.05	-	-	-	T	2160849	A	T	2160849	3	4	961	1	0	0	0	0	1	0	0	0	14446	304	11	5	646	5	SKI	1	2160849	Missense_Mutation	SNP	A	TCGA-OL-A5D6-01A-21D-A27P-09		2160849	247089772	1	76429										
H6PD	0	genome.wustl.edu	37	chr1	9323595	9323595	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	agtgcacattgacaaccttcGctgggagggcgtgcctttca	12	11	1	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	9323595	9323595	G	T	SNP	H6PD	ENST00000377403	human	ensembl	69_37n	1	known	missense	c.1043	p.R348L	1.000	pfam_G6P_DH_C,prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239	63	0	0	48	19	28.36	-	-	-	T	9323595	G	T	9323595	3	4	961	1	0	0	0	0	1	0	0	0	6987	1087	38	3	1057	3	H6PD	1	9323595	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	7162746	9323595	239927026	2	76430										
KDM4A	0	genome.wustl.edu	37	chr1	44169764	44169764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	actggatgaagagcttcccaAgagagtcaaatctagactgg	11	8	2	4			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	44169764	44169764	A	G	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	1	known	missense	c.3035	p.K1012R	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	97	0	0	83	13	13.54	-	-	-	G	44169764	A	G	44169764	3	3	961	1	0	0	0	0	1	0	0	0	8182	72	3	5	3113	5	KDM4A	1	44169764	Missense_Mutation	SNP	A	TCGA-OL-A5D6-01A-21D-A27P-09	34846169	44169764	205080857	3	76431										
UBE2Q1	0	genome.wustl.edu	37	chr1	154524283	154524283	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	tccatgcagatggcccctccGcccagaacatacctgcatga	8	16	0	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	154524283	154524283	G	A	SNP	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	silent	c.1038	p.G346	0.544	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	22	0	0	29	10	25.64	-	-	-	A	154524283	G	A	154524283	2	1	961	1	0	0	0	0	0	0	0	1	16966	1074	38	1		1	UBE2Q1	1	154524283	Silent	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	110354519	154524283	94726338	4	76432										
B3GALT2	0	genome.wustl.edu	37	chr1	193150064	193150064	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gaattatatcatgatattgtCtgctttcttccagtattgca	6	7	3	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	193150064	193150064	C	G	SNP	B3GALT2	ENST00000367434	human	ensembl	69_37n	-1	known	missense	c.629	p.R210T	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630	28	0	0	27	5	15.62	-	-	-	G	193150064	C	G	193150064	3	3	961	1	0	0	0	0	1	0	0	0	1252	913	32	2	643	2	B3GALT2	1	193150064	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	38625781	193150064	56100557	5	76433										
AVPR1B	0	genome.wustl.edu	37	chr1	206231084	206231084	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gaggcccaggcctgaagagtCaccaagggacttggagctgg	16	10	1	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	206231084	206231084	C	T	SNP	AVPR1B	ENST00000367126	human	ensembl	69_37n	1	known	missense	c.1217	p.S406L	0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049	45	0	0	51	6	10.53	-	-	-	T	206231084	C	T	206231084	3	4	961	1	0	0	0	0	1	0	0	0	1236	838	29	2	1223	2	AVPR1B	1	206231084	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	13081020	206231084	43019537	6	76434										
DUSP10	0	genome.wustl.edu	37	chr1	221913041	221913041	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	atcctgaggtcggacgggccTagatagtgccactactaccc	11	13	0	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	221913041	221913041	T	G	SNP	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	silent	c.46	p.R16	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	35	0	0	35	7	16.67	-	-	-	G	221913041	T	G	221913041	2	3	961	1	0	0	0	0	0	0	0	1	4845	1521	53	5		5	DUSP10	1	221913041	Silent	SNP	T	TCGA-OL-A5D6-01A-21D-A27P-09	15681957	221913041	27337580	7	76435										
TRIM58	0	genome.wustl.edu	37	chr1	248039236	248039236	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gatcccgccacggcgcacccGagtctgctcttgaccgccga	11	18	2	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	1	248039236	248039236	G	A	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	1	known	silent	c.906	p.P302	0.001	superfamily_ConA-like_lec_gl,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	49	0	0	31	11	26.19	-	-	-	A	248039236	G	A	248039236	2	1	961	1	0	0	0	0	0	0	0	1	16627	1045	37	1		1	TRIM58	1	248039236	Silent	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	26126195	248039236	1211385	8	76436										
DPP10	0	genome.wustl.edu	37	chr2	116535382	116535382	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gttactttctgagcactgaaTcttctcccagaggaaggcag	10	10	3	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	2	116535382	116535382	T	A	SNP	DPP10	ENST00000393147	human	ensembl	69_37n	1	known	missense	c.1345	p.S449T	0.005	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	43	0	0	32	19	37.25	-	-	-	A	116535382	T	A	116535382	3	1	961	1	0	0	0	0	1	0	0	0	4762	1435	50	5	1562	5	DPP10	2	116535382	Missense_Mutation	SNP	T	TCGA-OL-A5D6-01A-21D-A27P-09		116535382	126663991	9	76437										
MCM6	0	genome.wustl.edu	37	chr2	136622668	136622669	+	Frame_Shift_Del	DEL	CA	CA	-													0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aacactttctcccattctttCacagtcatttggttcttaat							TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	2	136622668	136622669	CA	-	DEL	MCM6	ENST00000264156	human	ensembl	69_37n	-1	known	frame_shift_del	c.993_992	p.V331fs	1.000:1.000	smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003	74	0	0	63	15	18.75	-	-	-	-	136622669	CA	-	136622668	7	5	961	1	0	1	0	1	0	0	0	0	9462	813	29	0	1516	0	MCM6	2	136622668	Frame_Shift_Del	DEL	CA	TCGA-OL-A5D6-01A-21D-A27P-09	20087286	136622668	106576705	10	76438										
NEB	0	genome.wustl.edu	37	chr2	152421652	152421652	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ttgctttattaaatgtttctTtatattttacctaaggagag	6	4	1	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	2	152421652	152421652	T	C	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.18377	p.K6126R	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	46	0	0	46	12	20.69	-	-	-	C	152421652	T	C	152421652	3	2	961	1	0	0	0	0	1	0	0	0	10374	1841	64	5	7573	5	NEB	2	152421652	Missense_Mutation	SNP	T	TCGA-OL-A5D6-01A-21D-A27P-09	15798984	152421652	90777721	11	76439										
TTN	0	genome.wustl.edu	37	chr2	179640347	179640347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	tgtttggctctggattctttCgaagatttttggagcctcca	10	8	2	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	2	179640347	179640347	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6244	p.E2082K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	15	0	0	20	5	20	-	-	-	T	179640347	C	T	179640347	3	4	961	1	0	0	0	0	1	0	0	0	16832	893	31	1	105084	1	TTN	2	179640347	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	27218695	179640347	63559026	12	76440										
XIRP1	0	genome.wustl.edu	37	chr3	39228770	39228770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	agtgaacttgtggacagaacCcgcggggatggacccagcga	15	10	0	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	3	39228770	39228770	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.2167	p.G723S	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	26	0	0	49	6	10.91	-	-	-	T	39228770	C	T	39228770	3	4	961	1	0	0	0	0	1	0	0	0	17526	623	22	4	3368	4	XIRP1	3	39228770	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		39228770	158793660	13	76441										
PIK3CA	0	genome.wustl.edu	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	26	0	0	36	10	21.74	-	-	-	A	178921553	T	A	178921553	3	1	961	1	0	0	0	0	1	0	0	0	11987	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-OL-A5D6-01A-21D-A27P-09	139692783	178921553	19100877	14	76442										
G3BP2	0	genome.wustl.edu	37	chr4	76582746	76582746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aattgagaaacttacttcagGagccagaacaaaggtttgca	9	7	1	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	4	76582746	76582746	G	A	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.346	p.P116S	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	20	0	0	16	7	30.43	-	-	-	A	76582746	G	A	76582746	3	1	961	1	0	0	0	0	1	0	0	0	6191	1174	41	2	1138	2	G3BP2	4	76582746	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09		76582746	114571530	15	76443										
NR2F1	0	genome.wustl.edu	37	chr5	92929603	92929603	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gagactcagaggacccacctGggccaaggactccaaagccg	12	14	1	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	5	92929603	92929603	G	A	SNP	NR2F1	ENST00000506162	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.020	-	-	-	no_errors	NR2F1	HGNC	ENSG00000175745	39	0	0	24	11	31.43	-	-	-	A	92929603	G	A	92929603	1	1	961	0	1	0	0	0	0	0	0	0	10700	1363	47	4		4	NR2F1	5	92929603	RNA	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09		92929603	87985657	16	76444										
APBB3	0	genome.wustl.edu	37	chr5	139938256	139938256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	tcgaggggttgcccctgcacCgccaacccctcctttgagca	10	17	0	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	5	139938256	139938256	C	T	SNP	APBB3	ENST00000356738	human	ensembl	69_37n	-1	known	missense	c.1390	p.G464S	0.989	NULL	pfam_PTyr_interaction_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_WW_Rsp5_WWP	-	no_errors	APBB3	HGNC	ENSG00000113108	26	0	0	26	7	21.21	-	-	-	T	139938256	C	T	139938256	3	4	961	1	0	0	0	0	1	0	0	0	763	652	23	1	89	1	APBB3	5	139938256	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	47008653	139938256	40977004	17	76445										
PCDHA9	0	genome.wustl.edu	37	chr5	140229249	140229249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gcaggttacctgctccctgaCgccccacgtccccttcaagc	8	19	1	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	5	140229249	140229249	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	1	known	missense	c.1169	p.T390M	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	120	0	0	69	36	34.29	-	-	-	T	140229249	C	T	140229249	3	4	961	1	0	0	0	0	1	0	0	0	11604	536	19	1	1171	1	PCDHA9	5	140229249	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	290993	140229249	40686011	18	76446										
TRDN	0	genome.wustl.edu	37	chr6	123539855	123539855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	catagccattgtacccatccAagtagacacactggaagaaa	7	11	0	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	6	123539855	123539855	A	G	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.2081	p.L694S	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	35	0	0	45	12	21.05	-	-	-	G	123539855	A	G	123539855	3	3	961	1	0	0	0	0	1	0	0	0	16564	131	5	5	112	5	TRDN	6	123539855	Missense_Mutation	SNP	A	TCGA-OL-A5D6-01A-21D-A27P-09		123539855	47575212	19	76447										
SH2D4B	0	genome.wustl.edu	37	chr10	82394052	82394052	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ttaaatcaggaattattagcCgagaagatgcagaagctctc	9	7	2	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	10	82394052	82394052	C	T	SNP	SH2D4B	ENST00000470604	human	ensembl	69_37n	1	known	nonsense	c.994	p.R332*	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217	31	0	0	35	13	27.08	-	-	-	T	82394052	C	T	82394052	4	4	961	1	0	0	0	0	0	1	0	0	14324	667	23	1		1	SH2D4B	10	82394052	Nonsense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		82394052	53140695	20	76448										
MPPED2	0	genome.wustl.edu	37	chr11	30557579	30557579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	tcttaacctctgagggcagtCccagctcggtgaaatcgcct	10	13	2	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	11	30557579	30557579	C	T	SNP	MPPED2	ENST00000358117	human	ensembl	69_37n	-1	known	missense	c.272	p.G91E	1.000	pfam_Metallo_PEstase_dom	pfam_Metallo_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382	55	0	0	43	6	12.24	-	-	-	T	30557579	C	T	30557579	3	4	961	1	0	0	0	0	1	0	0	0	9814	855	30	2	704	2	MPPED2	11	30557579	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		30557579	104448937	21	76449										
DYRK4	0	genome.wustl.edu	37	chr12	4702196	4702196	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aagctttttaagaaccagctGtctccatatgaacaaagtga	7	8	1	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	12	4702196	4702196	G	T	SNP	DYRK4	ENST00000010132	human	ensembl	69_37n	1	known	silent	c.147	p.L49	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	27	0	0	33	14	29.79	-	-	-	T	4702196	G	T	4702196	2	4	961	1	0	0	0	0	0	0	0	1	4893	1364	48	4		4	DYRK4	12	4702196	Silent	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09		4702196	129149699	22	76450										
ANO4	0	genome.wustl.edu	37	chr12	101188653	101188653	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	cccgaggggaggctgaaaagGacttgtgtgtggtggtttta	17	5	0	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	12	101188653	101188653	G	T	SNP	ANO4	ENST00000551148	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ANO4	HGNC	ENSG00000151572	21	0	0	20	9	31.03	-	-	-	T	101188653	G	T	101188653	1	4	961	0	1	0	0	0	0	0	0	0	698	1189	41	2		2	ANO4	12	101188653	RNA	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	96486457	101188653	32663242	23	76451										
TCTN1	0	genome.wustl.edu	37	chr12	111082851	111082851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gccagggcttcccagattacGtggccccttttggaaattcc	10	13	0	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	12	111082851	111082851	G	A	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	1	known	missense	c.1411	p.V471M	1.000	NULL	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	58	0	0	33	11	25	-	-	-	A	111082851	G	A	111082851	3	1	961	1	0	0	0	0	1	0	0	0	15817	1145	40	1	1629	1	TCTN1	12	111082851	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	9894198	111082851	22769044	24	76452										
HNRNPC	0	genome.wustl.edu	37	chr14	21679501	21679501	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	acaaacaggatggagttagaGgcactccatgtgtccctgag	12	9	0	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	14	21679501	21679501	G	C	SNP	HNRNPC	ENST00000336053	human	ensembl	69_37n	-1	putative	missense	c.862	p.L288V	0.998	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	91	0	0	70	23	24.73	-	-	-	C	21679501	G	C	21679501	3	2	961	1	0	0	0	0	1	0	0	0	7313	1015	35	4		4	HNRNPC	14	21679501	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09		21679501	85670039	25	76453										
HNRNPC	0	genome.wustl.edu	37	chr14	21681136	21681136	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	tacactttccagacttggaaGatccccgctgtccactctta	6	14	1	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	14	21681136	21681136	G	T	SNP	HNRNPC	ENST00000320084	human	ensembl	69_37n	-1	known	missense	c.545	p.S182Y	1.000	superfamily_Regulat_G_prot_signal_superfam,pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199	43	0	0	42	12	22.22	-	-	-	T	21681136	G	T	21681136	3	4	961	1	0	0	0	0	1	0	0	0	7313	942	33	2	391	2	HNRNPC	14	21681136	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	1635	21681136	85668404	26	76454										
PLEKHH1	0	genome.wustl.edu	37	chr14	68038563	68038565	+	In_Frame_Del	DEL	CCT	CCT	-													0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gagtttccgaatctcggtccCctcctctgagtccaggaaga							TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	14	68038563	68038565	CCT	-	DEL	PLEKHH1	ENST00000329153	human	ensembl	69_37n	1	known	in_frame_del	c.1529_1531	p.S512in_frame_del	0.977:0.983:0.992	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	40	0	0	28	6	17.65	-	-	-	-	68038565	CCT	-	68038563	7	5	961	1	0	1	0	1	0	0	0	0	12150	623	22	0	1563	0	PLEKHH1	14	68038563	In_Frame_Del	DEL	CCT	TCGA-OL-A5D6-01A-21D-A27P-09	46357427	68038563	39310977	27	76455										
ZFP36L1	0	genome.wustl.edu	37	chr14	69259696	69259696	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aggggcgaggatctggtgtgTcgcgaaggtcccggtgcggg	21	8	1	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	14	69259696	69259696	T	A	SNP	ZFP36L1	ENST00000553375	human	ensembl	69_37n	-1	putative	missense	c.167	p.D56V	0.004	NULL	pfam_Tis11B_N	-	no_stop_codon:bad_bp_length_for_coding_region	ZFP36L1	HGNC	ENSG00000185650	91	0	0	68	21	23.6	-	-	-	A	69259696	T	A	69259696	3	1	961	1	0	0	0	0	1	0	0	0	17742	1682	58	5		5	ZFP36L1	14	69259696	Missense_Mutation	SNP	T	TCGA-OL-A5D6-01A-21D-A27P-09	1221133	69259696	38089844	28	76456										
MAN2A2	0	genome.wustl.edu	37	chr15	91461569	91461569	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	atttcatcctctggcttcctCactgccctgtgacttccacc	5	17	3	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	15	91461569	91461569	C	T	SNP	MAN2A2	ENST00000360468	human	ensembl	69_37n	1	known	missense	c.3140	p.S1047L	0.016	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547	53	0	0	49	9	15.52	-	-	-	T	91461569	C	T	91461569	3	4	961	1	0	0	0	0	1	0	0	0	9286	838	29	2	3218	2	MAN2A2	15	91461569	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		91461569	11069823	29	76457										
PALB2	0	genome.wustl.edu	37	chr16	23647265	23647265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ctggaagttcagatttaagaCttaaaaggtgagttcttatt	9	4	2	3			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	16	23647265	23647265	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.602	p.S201N	0.004	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	46	0	0	42	17	28.81	-	-	-	T	23647265	C	T	23647265	3	4	961	1	0	0	0	0	1	0	0	0	11479	565	20	4	2998	4	PALB2	16	23647265	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		23647265	66707488	30	76458										
SULT1A2	0	genome.wustl.edu	37	chr16	28603420	28603421	+	Frame_Shift_Del	DEL	TC	TC	-													0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gtccgcatcgaagcgctcatTctgcgccacggtgaaggtgg							TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	16	28603420	28603421	TC	-	DEL	SULT1A2	ENST00000335715	human	ensembl	69_37n	-1	known	frame_shift_del	c.817_816	p.N273fs	1.000:1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1A2	HGNC	ENSG00000197165	88	0	0	63	9	12.5	-	-	-	-	28603421	TC	-	28603420	7	5	961	1	0	1	0	1	0	0	0	0	15464	1783	62	0	74	0	SULT1A2	16	28603420	Frame_Shift_Del	DEL	TC	TCGA-OL-A5D6-01A-21D-A27P-09	4956155	28603420	61751333	31	76459										
MMP15	0	genome.wustl.edu	37	chr16	58074508	58074508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gggctggagcactccagcaaCcccaatgccatcatggcgcc	11	16	1	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	16	58074508	58074508	C	A	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	1	known	missense	c.816	p.N272K	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A_matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	67	0	0	29	22	43.14	-	-	-	A	58074508	C	A	58074508	3	1	961	1	0	0	0	0	1	0	0	0	9725	506	18	4	834	4	MMP15	16	58074508	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	29471088	58074508	32280245	32	76460										
MON1B	0	genome.wustl.edu	37	chr16	77232125	77232125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aggaggaccggctcttcattCgttacccacccaagtactcc	8	15	2	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	16	77232125	77232125	C	T	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	missense	c.1564	p.R522C	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	52	0	0	23	17	42.5	-	-	-	T	77232125	C	T	77232125	3	4	961	1	0	0	0	0	1	0	0	0	9771	884	31	1	1582	1	MON1B	16	77232125	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09	19157617	77232125	13122628	33	76461										
TP53	0	genome.wustl.edu	37	chr17	7577557	7577557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ccggttcatgccgcccatgcAggaactgttacacatgtagt	10	12	1	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	17	7577557	7577557	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.724	p.C242G	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	77	0	0	33	15	31.25	-	-	-	C	7577557	A	C	7577557	3	2	961	1	0	0	0	0	1	0	0	0	16477	188	7	5	566	5	TP53	17	7577557	Missense_Mutation	SNP	A	TCGA-OL-A5D6-01A-21D-A27P-09		7577557	73617653	34	76462										
DNAH2	0	genome.wustl.edu	37	chr17	7736205	7736205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gcctctcctgggagtttatcGtttccactgtggatgacagc	11	11	1	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	17	7736205	7736205	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	1	known	missense	c.12937	p.V4313I	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	68	0	0	44	11	20	-	-	-	A	7736205	G	A	7736205	3	1	961	1	0	0	0	0	1	0	0	0	4638	1145	40	1	13267	1	DNAH2	17	7736205	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	158648	7736205	73459005	35	76463										
ERBB2	0	genome.wustl.edu	37	chr17	37881000	37881000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aagcatacgtgatggctggtGtgggctccccatatgtctcc	12	11	1	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	17	37881000	37881000	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	1	known	missense	c.2329	p.V777L	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	67	0	0	26	35	57.38	-	-	-	T	37881000	G	T	37881000	3	4	961	1	0	0	0	0	1	0	0	0	5243	1377	48	4	2407	4	ERBB2	17	37881000	Missense_Mutation	SNP	G	TCGA-OL-A5D6-01A-21D-A27P-09	30144795	37881000	43314210	36	76464										
CLUL1	0	genome.wustl.edu	37	chr18	627251	627251	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gttgactgtggatgtgaattCtctctttaacaggagtttta	10	5	2	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	18	627251	627251	C	T	SNP	CLUL1	ENST00000338387	human	ensembl	69_37n	1	known	missense	c.578	p.S193F	0.009	pfam_Clusterin-like,smart_Clusterin_N	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	81	0	0	37	28	43.08	-	-	-	T	627251	C	T	627251	3	4	961	1	0	0	0	0	1	0	0	0	3600	913	32	2	592	2	CLUL1	18	627251	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		627251	77449997	37	76465										
RYR1	0	genome.wustl.edu	37	chr19	39018355	39018355	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gtcccgggtcgcgaggaggaCgccgatgaccccgagaaaat	15	12	0	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	19	39018355	39018355	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	silent	c.10755	p.D3585	0.700	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	79	0	0	46	15	24.19	-	-	-	T	39018355	C	T	39018355	2	4	961	1	0	0	0	0	0	0	0	1	13854	535	19	1		1	RYR1	19	39018355	Silent	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		39018355	20110628	38	76466										
ANGPT4	0	genome.wustl.edu	37	chr20	853640	853640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	gtatcatcatgcgagaggcaCgcagtgagtagctggggccc	15	10	2	2			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	20	853640	853640	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.1475	p.R492H	0.840	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	92	0	0	70	23	24.73	-	-	-	T	853640	C	T	853640	3	4	961	1	0	0	0	0	1	0	0	0	612	536	19	1	40	1	ANGPT4	20	853640	Missense_Mutation	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		853640	62171880	39	76467										
ASXL1	0	genome.wustl.edu	37	chr20	31021321	31021321	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	ggggttgctaaggatgcaaaAtctgtggcctcagatgttcc	13	8	2	1			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	20	31021321	31021321	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.1320	p.K440	0.210	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	21	0	0	22	5	18.52	-	-	-	G	31021321	A	G	31021321	2	3	961	1	0	0	0	0	0	0	0	1	1070	98	4	5		5	ASXL1	20	31021321	Silent	SNP	A	TCGA-OL-A5D6-01A-21D-A27P-09	30167681	31021321	32004199	40	76468										
SLC25A1	0	genome.wustl.edu	37	chr22	19163984	19163984	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0975609756097561	4	0.606112594578808	1.46880570409982	4.03921568627451	1.21176470588235	0.523809523809524	1	0	aagccgcagtcccacgtgttCcggtatttgtgcgcctccag	11	14	0	0			TCGA-OL-A5D6-01A-21D-A27P-09	TCGA-OL-A5D6-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9db3047-65be-437a-907b-d2d56873fb56	ccc9d7d3-f529-4d1f-82a5-fba4076cc831	22	19163984	19163984	C	T	SNP	SLC25A1	ENST00000215882	human	ensembl	69_37n	-1	known	silent	c.771	p.R257	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075	30	0	0	22	11	33.33	-	-	-	T	19163984	C	T	19163984	2	4	961	1	0	0	0	0	0	0	0	1	14560	842	30	2		2	SLC25A1	22	19163984	Silent	SNP	C	TCGA-OL-A5D6-01A-21D-A27P-09		19163984	32140582	41	76469										
CROCC	0	genome.wustl.edu	37	chr1	17267302	17267302	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gtccatcacagctcactgtaAcctggaactcccagactcaa	6	15	3	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	17267302	17267302	A	G	SNP	CROCC	ENST00000466256	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	CROCC	HGNC	ENSG00000058453	9	0	0	18	5	21.74	-	-	-	G	17267302	A	G	17267302	1	3	962	0	1	0	0	0	0	0	0	0	3923	58	2	5		5	CROCC	1	17267302	RNA	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09		17267302	231983319	1	76470										
KIAA0319L	0	genome.wustl.edu	37	chr1	35928260	35928260	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tagaagtggttggcaaagagAtctcctggaactgaggtgac	14	6	1	4			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	35928260	35928260	A	T	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.1256	p.I419N	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	24	0	0	20	17	45.95	-	-	-	T	35928260	A	T	35928260	3	4	962	1	0	0	0	0	1	0	0	0	8221	333	12	5	1949	5	KIAA0319L	1	35928260	Missense_Mutation	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09	18660958	35928260	213322361	2	76471										
DPH2	0	genome.wustl.edu	37	chr1	44437411	44437411	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tatctggtagagagggccagAgatgcccgcgtggtagggct	17	8	1	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	44437411	44437411	A	G	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	1	known	silent	c.837	p.R279	1.000	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	45	0	0	25	4	13.79	-	-	-	G	44437411	A	G	44437411	2	3	962	1	0	0	0	0	0	0	0	1	4755	301	11	5		5	DPH2	1	44437411	Silent	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09	8509151	44437411	204813210	3	76472										
SLC5A9	0	genome.wustl.edu	37	chr1	48713394	48713394	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	acaagtggagaaacagaagcCcagagagagcactgggtttg	14	7	0	4			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	48713394	48713394	C	T	SNP	SLC5A9	ENST00000471020	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SLC5A9	HGNC	ENSG00000117834	11	0	0	5	230	97.87	-	-	-	T	48713394	C	T	48713394	1	4	962	0	1	0	0	0	0	0	0	0	14761	638	22	4		4	SLC5A9	1	48713394	RNA	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	4275983	48713394	200537227	4	76473										
PYHIN1	0	genome.wustl.edu	37	chr1	158908228	158908228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ttccagtcaaaggaataatcCcatctaaaaagacgaaacag	6	9	2	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	158908228	158908228	C	A	SNP	PYHIN1	ENST00000368140	human	ensembl	69_37n	1	known	missense	c.307	p.P103T	0.003	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	25	0	0	41	10	19.61	-	-	-	A	158908228	C	A	158908228	3	1	962	1	0	0	0	0	1	0	0	0	12948	623	22	4	313	4	PYHIN1	1	158908228	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	110194834	158908228	90342393	5	76474										
FMO3	0	genome.wustl.edu	37	chr1	171083267	171083267	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcggccatttttgaggatggGaccatatttgagggcattga	13	6	0	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	171083267	171083267	G	C	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	1	known	silent	c.948	p.G316	0.033	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	61	0	0	115	17	12.88	-	-	-	C	171083267	G	C	171083267	2	2	962	1	0	0	0	0	0	0	0	1	6002	1161	41	2		2	FMO3	1	171083267	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	12175039	171083267	78167354	6	76475										
TPR	0	genome.wustl.edu	37	chr1	186304471	186304471	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	agcagaattagctaatcaccTtattagaaggttcttgaggc	9	7	2	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	186304471	186304471	T	A	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.4910	p.K1637M	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	17	0	0	8	5	38.46	-	-	-	A	186304471	T	A	186304471	3	1	962	1	0	0	0	0	1	0	0	0	16512	1623	56	5	2253	5	TPR	1	186304471	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	15221204	186304471	62946150	7	76476										
PTPN7	0	genome.wustl.edu	37	chr1	202127399	202127399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	acggcccccagggaccgaacGtccagcatcagagccacatt	10	16	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	202127399	202127399	G	A	SNP	PTPN7	ENST00000435759	human	ensembl	69_37n	-1	novel	missense	c.172	p.R58C	0.787	NULL	NULL	-	no_stop_codon	PTPN7	HGNC	ENSG00000143851	64	0	0	43	18	29.51	-	-	-	A	202127399	G	A	202127399	3	1	962	1	0	0	0	0	1	0	0	0	12876	1136	40	1	961	1	PTPN7	1	202127399	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	15822928	202127399	47123222	8	76477										
OR2T2	0	genome.wustl.edu	37	chr1	248616356	248616356	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cccaagatgctccaggacctCctgtccaaggacaagaccat	8	15	0	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	1	248616356	248616356	C	A	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	1	known	silent	c.258	p.L86	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	87	0	0	126	17	11.89	-	-	-	A	248616356	C	A	248616356	2	1	962	1	0	0	0	0	0	0	0	1	11093	842	30	2		2	OR2T2	1	248616356	Silent	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	46488957	248616356	634265	9	76478										
PPP1CB	0	genome.wustl.edu	37	chr2	29004694	29004694	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cattgtggatgagaagatctTctgttgtcatggaggtagac	13	5	3	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	29004694	29004694	T	G	SNP	PPP1CB	ENST00000296122	human	ensembl	69_37n	1	known	missense	c.506	p.F169C	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CB	HGNC	ENSG00000213639	23	0	0	32	20	38.46	-	-	-	G	29004694	T	G	29004694	3	3	962	1	0	0	0	0	1	0	0	0	12427	1783	62	5	520	5	PPP1CB	2	29004694	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09		29004694	214194679	10	76479										
ANKRD36	0	genome.wustl.edu	37	chr2	97815094	97815094	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gaatgagttttctttggaatCtgaggtagagtactctcttg	11	5	3	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	97815094	97815094	C	A	SNP	ANKRD36	ENST00000420699	human	ensembl	69_37n	1	known	missense	c.1097	p.S366Y	0.033	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	47	0	0	54	10	15.62	-	-	-	A	97815094	C	A	97815094	3	1	962	1	0	0	0	0	1	0	0	0	664	913	32	2	1143	2	ANKRD36	2	97815094	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	68810400	97815094	145384279	11	76480										
GPD2	0	genome.wustl.edu	37	chr2	157358332	157358332	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cttaagaaactgtaaaacttTaagaagagaactacgcctgt	7	7	0	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	157358332	157358332	T	G	SNP	GPD2	ENST00000495851	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	GPD2	HGNC	ENSG00000115159	37	0	0	39	17	30.36	-	-	-	G	157358332	T	G	157358332	1	3	962	0	1	0	0	0	0	0	0	0	6656	1769	61	5		5	GPD2	2	157358332	RNA	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	59543238	157358332	85841041	12	76481										
SLC38A11	0	genome.wustl.edu	37	chr2	165755107	165755107	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tagccatgacgaatccaaaaAccatcaccacagcaccaatg	5	14	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	165755107	165755107	A	T	SNP	SLC38A11	ENST00000409149	human	ensembl	69_37n	-1	known	missense	c.1061	p.V354D	0.806	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A11	HGNC	ENSG00000169507	32	0	0	44	7	13.46	-	-	-	T	165755107	A	T	165755107	3	4	962	1	0	0	0	0	1	0	0	0	14692	43	2	5	163	5	SLC38A11	2	165755107	Missense_Mutation	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09	8396775	165755107	77444266	13	76482										
TTN	0	genome.wustl.edu	37	chr2	179466507	179466507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ttactgaggagttttcagcaGtctccagctgtacaaagaaa	9	8	2	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	179466507	179466507	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.47606	p.T15869I	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	29	0	0	33	12	26.67	-	-	-	A	179466507	G	A	179466507	3	1	962	1	0	0	0	0	1	0	0	0	16832	1029	36	4	52691	4	TTN	2	179466507	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	13711400	179466507	63732866	14	76483										
FAM124B	0	genome.wustl.edu	37	chr2	225265995	225265995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	aattgctcttttgcaaggtcGcttctctctgcaggatcatc	8	11	4	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	2	225265995	225265995	G	A	SNP	FAM124B	ENST00000409685	human	ensembl	69_37n	-1	known	missense	c.491	p.A164V	1.000	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019	26	0	0	30	5	14.29	-	-	-	A	225265995	G	A	225265995	3	1	962	1	0	0	0	0	1	0	0	0	5466	1087	38	1	975	1	FAM124B	2	225265995	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	45799488	225265995	17933378	15	76484										
SEMA3F	0	genome.wustl.edu	37	chr3	50224045	50224045	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcaacccctctcactctaaaGccaacaagaatgccgtggag	7	14	3	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	3	50224045	50224045	G	C	SNP	SEMA3F	ENST00000002829	human	ensembl	69_37n	1	known	splice_site	c.1814-1	e17-1	1.000	-	-	-	no_errors	SEMA3F	HGNC	ENSG00000001617	75	0	0	42	33	44	-	-	-	C	50224045	G	C	50224045	5	2	962	1	0	0	0	0	0	0	1	0	14117	985	34	4	1879	4	SEMA3F	3	50224045	Splice_Site	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09		50224045	147798385	16	76485										
MYH15	0	genome.wustl.edu	37	chr3	108156455	108156455	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tttccaggttctccatacttTcccgattcagctttaaattg	5	11	2	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	3	108156455	108156455	T	C	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	missense	c.3227	p.E1076G	0.762	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	60	0	0	63	16	20.25	-	-	-	C	108156455	T	C	108156455	3	2	962	1	0	0	0	0	1	0	0	0	10106	1783	62	5	2681	5	MYH15	3	108156455	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	57932410	108156455	89865975	17	76486										
MRPL3	0	genome.wustl.edu	37	chr3	131219335	131219335	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ataaaggcatcatgcccagcTtcaaggcaataagaccaact	7	11	2	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	3	131219335	131219335	T	A	SNP	MRPL3	ENST00000264995	human	ensembl	69_37n	-1	known	missense	c.308	p.K103M	1.000	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	-	no_errors	MRPL3	HGNC	ENSG00000114686	18	0	0	12	19	61.29	-	-	-	A	131219335	T	A	131219335	3	1	962	1	0	0	0	0	1	0	0	0	9865	1609	56	5	770	5	MRPL3	3	131219335	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	23062880	131219335	66803095	18	76487										
ODAM	0	genome.wustl.edu	37	chr4	71068004	71068004	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ggaggacagcagcaactagcTtttgatccccaactaggcac	10	12	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	4	71068004	71068004	T	G	SNP	ODAM	ENST00000396094	human	ensembl	69_37n	1	known	silent	c.606	p.A202	0.010	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205	44	0	0	48	9	15.79	-	-	-	G	71068004	T	G	71068004	2	3	962	1	0	0	0	0	0	0	0	1	10897	1596	56	5		5	ODAM	4	71068004	Silent	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09		71068004	120086272	19	76488										
VEGFC	0	genome.wustl.edu	37	chr4	177608425	177608425	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cacaggcacattttccaggaTttaggggttgatttctgggg	13	7	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	4	177608425	177608425	T	C	SNP	VEGFC	ENST00000280193	human	ensembl	69_37n	-1	known	missense	c.1061	p.N354S	1.000	NULL	pfam_PD_growth_factor,pfam_CXCXC_repeat,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFC	HGNC	ENSG00000150630	82	0	0	47	29	38.16	-	-	-	C	177608425	T	C	177608425	3	2	962	1	0	0	0	0	1	0	0	0	17249	1493	52	5	209	5	VEGFC	4	177608425	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	106540421	177608425	13545851	20	76489										
PDCD6	0	genome.wustl.edu	37	chr5	314783	314783	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tgtacatatgtggataagctGattaatggttttgcaactgt	10	4	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	5	314783	314783	G	C	SNP	PDCD6	ENST00000511482	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDCD6	HGNC	ENSG00000249915	36	0	0	35	5	12.5	-	-	-	C	314783	G	C	314783	1	2	962	0	1	0	0	0	0	0	0	0	11696	1305	45	2		2	PDCD6	5	314783	RNA	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09		314783	180600477	21	76490										
SCAND3	0	genome.wustl.edu	37	chr6	28541421	28541421	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tagtacttcaccatcaattaCagctacaaaaccaaactcaa	2	12	3	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	6	28541421	28541421	C	A	SNP	SCAND3	ENST00000452236	human	ensembl	69_37n	-1	known	missense	c.2245	p.V749L	0.873	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	26	0	0	33	7	17.5	-	-	-	A	28541421	C	A	28541421	3	1	962	1	0	0	0	0	1	0	0	0	13963	478	17	4	1736	4	SCAND3	6	28541421	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		28541421	142573646	22	76491										
C6orf1	0	genome.wustl.edu	37	chr6	34214299	34214299	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	agcccaggagggctagagaaAgcaaaggtgtctaccagccg	14	10	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	6	34214299	34214299	A	G	SNP	C6orf1	ENST00000394990	human	ensembl	69_37n	-1	known	missense	c.472	p.F158L	0.000	NULL	NULL	-	no_errors	C6orf1	HGNC	ENSG00000186577	13	0	0	18	5	21.74	-	-	-	G	34214299	A	G	34214299	3	3	962	1	0	0	0	0	1	0	0	0	2337	72	3	5	11	5	C6orf1	6	34214299	Missense_Mutation	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09	5672878	34214299	136900768	23	76492										
LRRN3	0	genome.wustl.edu	37	chr7	110764875	110764875	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tttatcctcctctgataaatCtctgggaagcaggaaaagaa	8	8	2	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	7	110764875	110764875	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	1	known	missense	c.2047	p.L683F	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	28	0	0	22	14	38.89	-	-	-	T	110764875	C	T	110764875	3	4	962	1	0	0	0	0	1	0	0	0	9102	913	32	2	2049	2	LRRN3	7	110764875	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		110764875	48373788	24	76493										
TRAPPC9	0	genome.wustl.edu	37	chr8	141468379	141468379	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	agttctgtccccgccgcttaCcagtccttcagggcgcgcag	11	16	2	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	8	141468379	141468379	C	G	SNP	TRAPPC9	ENST00000389328	human	ensembl	69_37n	-1	known	splice_site	c.284+1	e1+1	0.000	-	-	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	43	0	0	20	42	67.74	-	-	-	G	141468379	C	G	141468379	5	3	962	1	0	0	0	0	0	0	1	0	16561	521	18	4	3547	4	TRAPPC9	8	141468379	Splice_Site	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		141468379	4895643	25	76494										
GRID1	0	genome.wustl.edu	37	chr10	87487739	87487739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tggccagtgcatccaggacaTctatggagaaccctttgtag	11	10	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	10	87487739	87487739	T	C	SNP	GRID1	ENST00000327946	human	ensembl	69_37n	-1	known	missense	c.1406	p.D469G	1.000	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	30	0	0	26	5	16.13	-	-	-	C	87487739	T	C	87487739	3	2	962	1	0	0	0	0	1	0	0	0	6822	1435	50	5	1651	5	GRID1	10	87487739	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09		87487739	48047008	26	76495										
LIPK	0	genome.wustl.edu	37	chr10	90492304	90492304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	aaccctttccaggcgagtagTtaaggtatgtgacttcccaa	9	10	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	10	90492304	90492304	T	C	SNP	LIPK	ENST00000404190	human	ensembl	69_37n	1	known	missense	c.665	p.V222A	0.397	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPK	HGNC	ENSG00000204021	27	0	0	45	17	27.42	-	-	-	C	90492304	T	C	90492304	3	2	962	1	0	0	0	0	1	0	0	0	8883	1725	60	5	683	5	LIPK	10	90492304	Missense_Mutation	SNP	T	TCGA-OL-A5D7-01A-11D-A27P-09	3004565	90492304	45042443	27	76496										
CYP2C19	0	genome.wustl.edu	37	chr10	96522607	96522607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcctacagatagatattaagGatgtcagcaaatccttaacc	6	9	1	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	10	96522607	96522607	G	T	SNP	CYP2C19	ENST00000371321	human	ensembl	69_37n	1	known	missense	c.145	p.D49Y	0.003	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	31	0	0	32	14	30.43	-	-	-	T	96522607	G	T	96522607	3	4	962	1	0	0	0	0	1	0	0	0	4197	1174	41	2	147	2	CYP2C19	10	96522607	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	6030303	96522607	39012140	28	76497										
TSPAN4	0	genome.wustl.edu	37	chr11	865764	865764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cgccacgcgggtacctgactCctgctgcttggagttcagtg	13	13	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	865764	865764	C	T	SNP	TSPAN4	ENST00000397397	human	ensembl	69_37n	1	known	missense	c.503	p.S168F	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN4	HGNC	ENSG00000214063	50	0	0	20	23	53.49	-	-	-	T	865764	C	T	865764	3	4	962	1	0	0	0	0	1	0	0	0	16745	855	30	2	521	2	TSPAN4	11	865764	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		865764	134140752	29	76498										
SLC22A18	0	genome.wustl.edu	37	chr11	2937968	2937968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tgacgcccaggctccactgcCaggtaagccccgccaggtac	11	17	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	2937968	2937968	C	T	SNP	SLC22A18	ENST00000312221	human	ensembl	69_37n	1	known	missense	c.653	p.P218L	0.040	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC22A18	HGNC	ENSG00000110628	56	0	0	47	7	12.96	-	-	-	T	2937968	C	T	2937968	3	4	962	1	0	0	0	0	1	0	0	0	14538	594	21	4	671	4	SLC22A18	11	2937968	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	2072204	2937968	132068548	30	76499										
SOX6	0	genome.wustl.edu	37	chr11	16205462	16205462	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tgctgcaggagattaattttGtgctgctgttgcagaagttg	13	5	0	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	16205462	16205462	G	C	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.747	p.H249Q	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	26	0	0	16	9	36	-	-	-	C	16205462	G	C	16205462	3	2	962	1	0	0	0	0	1	0	0	0	15044	1368	48	4	1825	4	SOX6	11	16205462	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	13267494	16205462	118801054	31	76500										
USH1C	0	genome.wustl.edu	37	chr11	17531092	17531092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcttgggtgggaacggatggCgggggagggatgggaatggg	24	3	1	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	17531092	17531092	C	T	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	silent	c.1824	p.P608	0.732	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	15	0	0	4	5	50	-	-	-	T	17531092	C	T	17531092	2	4	962	1	0	0	0	0	0	0	0	1	17131	755	27	1		1	USH1C	11	17531092	Silent	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	1325630	17531092	117475424	32	76501										
LRP5	0	genome.wustl.edu	37	chr11	68115418	68115418	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gtcagcggcctggaggatgcGgccgcagtggacttccagtt	16	11	1	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	68115418	68115418	G	A	SNP	LRP5	ENST00000294304	human	ensembl	69_37n	1	known	silent	c.195	p.A65	0.892	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	45	0	0	36	5	12.2	-	-	-	A	68115418	G	A	68115418	2	1	962	1	0	0	0	0	0	0	0	1	9026	1103	39	1		1	LRP5	11	68115418	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	50584326	68115418	66891098	33	76502										
OR10G4	0	genome.wustl.edu	37	chr11	123886844	123886844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gcccatcctgaaactggcctGtgcagacacctcagccaacg	9	16	1	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	11	123886844	123886844	G	A	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	1	known	missense	c.563	p.C188Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	165	1	0.6	63	42	40	-	-	-	A	123886844	G	A	123886844	3	1	962	1	0	0	0	0	1	0	0	0	10974	1377	48	4	565	4	OR10G4	11	123886844	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	55771426	123886844	11119672	34	76503										
PA2G4	0	genome.wustl.edu	37	chr12	56504773	56504773	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ttgaagatgagaagaaggctCggatgggtgtggtggagtgc	19	3	0	4			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	12	56504773	56504773	C	G	SNP	PA2G4	ENST00000303305	human	ensembl	69_37n	1	known	missense	c.868	p.R290G	1.000	superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515	47	0	0	28	15	34.88	-	-	-	G	56504773	C	G	56504773	3	3	962	1	0	0	0	0	1	0	0	0	11434	875	31	3	906	3	PA2G4	12	56504773	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		56504773	77347122	35	76504										
PNN	0	genome.wustl.edu	37	chr14	39651035	39651035	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cttcaagaagtgaaagagacCgaaaatcagacaggaaagac	10	7	2	5			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	14	39651035	39651035	C	G	SNP	PNN	ENST00000216832	human	ensembl	69_37n	1	known	missense	c.2122	p.R708G	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941	13	0	0	15	9	37.5	-	-	-	G	39651035	C	G	39651035	3	3	962	1	0	0	0	0	1	0	0	0	12234	644	23	3	2156	3	PNN	14	39651035	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		39651035	67698505	36	76505										
ADAMTSL3	0	genome.wustl.edu	37	chr15	84592772	84592772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gccaggcctgtaacacagagCcctgtccccccaggtatgtg	11	15	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	15	84592772	84592772	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	1	known	missense	c.2104	p.P702S	0.994	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	29	0	0	7	5	38.46	-	-	-	T	84592772	C	T	84592772	3	4	962	1	0	0	0	0	1	0	0	0	276	739	26	4	2166	4	ADAMTSL3	15	84592772	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		84592772	17938620	37	76506										
PTX4	0	genome.wustl.edu	37	chr16	1535986	1535986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	agttggccccctgcacaaatCcgcctgctagtgcagcattg	10	14	0	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	16	1535986	1535986	C	T	SNP	PTX4	ENST00000447419	human	ensembl	69_37n	-1	known	missense	c.1391	p.G464E	0.500	superfamily_ConA-like_lec_gl,smart_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692	66	0	0	42	8	16	-	-	-	T	1535986	C	T	1535986	3	4	962	1	0	0	0	0	1	0	0	0	12906	855	30	2	48	2	PTX4	16	1535986	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		1535986	88818767	38	76507										
ZNF500	0	genome.wustl.edu	37	chr16	4815636	4815636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cggcctcctcaccgctctccGgctgctgctcgcgtacccga	10	20	2	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	16	4815636	4815636	G	A	SNP	ZNF500	ENST00000219478	human	ensembl	69_37n	-1	known	missense	c.344	p.P115L	0.999	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF500	HGNC	ENSG00000103199	57	0	0	41	12	22.64	-	-	-	A	4815636	G	A	4815636	3	1	962	1	0	0	0	0	1	0	0	0	18044	1116	39	1	1118	1	ZNF500	16	4815636	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	3279650	4815636	85539117	39	76508										
BRD7	0	genome.wustl.edu	37	chr16	50357607	50357607	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	acgtggccaaaaactcatggAtgctgcaagagacagttagg	12	8	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	16	50357607	50357607	A	C	SNP	BRD7	ENST00000394689	human	ensembl	69_37n	-1	known	missense	c.1334	p.I445S	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	26	0	0	24	11	31.43	-	-	-	C	50357607	A	C	50357607	3	2	962	1	0	0	0	0	1	0	0	0	1513	333	12	5	648	5	BRD7	16	50357607	Missense_Mutation	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09	45541971	50357607	39997146	40	76509										
AKTIP	0	genome.wustl.edu	37	chr16	53529185	53529185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcatcttacttaatgcagagCgataagatggctgcacatag	9	8	2	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	16	53529185	53529185	C	T	SNP	AKTIP	ENST00000300245	human	ensembl	69_37n	-1	known	missense	c.302	p.R101H	0.999	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	AKTIP	HGNC	ENSG00000166971	15	0	0	15	17	53.12	-	-	-	T	53529185	C	T	53529185	3	4	962	1	0	0	0	0	1	0	0	0	482	768	27	1	604	1	AKTIP	16	53529185	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	3171578	53529185	36825568	41	76510										
TP53	0	genome.wustl.edu	37	chr17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	aggacaggcacaaacacgcaCctcaaagctgttccgtccca	8	15	1	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	17	7577124	7577124	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.814	p.V272M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	28	0	0	16	18	52.94	-	-	-	T	7577124	C	T	7577124	3	4	962	1	0	0	0	0	1	0	0	0	16477	507	18	4	472	4	TP53	17	7577124	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		7577124	73618086	42	76511										
SP6	0	genome.wustl.edu	37	chr17	45925418	45925418	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	gggaggtccatccagctggtGcccggatgaaggtcccacca	14	13	0	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	17	45925418	45925418	G	A	SNP	SP6	ENST00000342234	human	ensembl	69_37n	-1	known	silent	c.378	p.G126	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120	43	0	0	9	20	68.97	-	-	-	A	45925418	G	A	45925418	2	1	962	1	0	0	0	0	0	0	0	1	15057	1306	46	4		4	SP6	17	45925418	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	38348294	45925418	35269792	43	76512										
FASN	0	genome.wustl.edu	37	chr17	80046086	80046086	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cccagggcgcgggccagcgtCttccacactatgctcaggta	12	15	2	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	17	80046086	80046086	C	G	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.2691	p.K897N	0.979	smart_PKS_dehydratase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	72	0	0	59	19	24.36	-	-	-	G	80046086	C	G	80046086	3	3	962	1	0	0	0	0	1	0	0	0	5729	912	32	2	4952	2	FASN	17	80046086	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	34120668	80046086	1149124	44	76513										
SBNO2	0	genome.wustl.edu	37	chr19	1112235	1112235	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ggaggcgaaccggcgctcccCggccagctccgagatgagga	16	14	0	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	19	1112235	1112235	C	G	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	missense	c.2581	p.G861R	0.998	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	15	0	0	21	31	59.62	-	-	-	G	1112235	C	G	1112235	3	3	962	1	0	0	0	0	1	0	0	0	13950	652	23	3	1563	3	SBNO2	19	1112235	Missense_Mutation	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09		1112235	58016748	45	76514										
CHAF1A	0	genome.wustl.edu	37	chr19	4422644	4422644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tgaaagaggaggccaagcggGccaaggaggaggccaagaag	18	7	0	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	19	4422644	4422644	G	A	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	1	known	missense	c.1099	p.A367T	0.999	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	31	0	0	31	8	20.51	-	-	-	A	4422644	G	A	4422644	3	1	962	1	0	0	0	0	1	0	0	0	3340	1203	42	4	1117	4	CHAF1A	19	4422644	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	3310409	4422644	54706339	46	76515										
ZNF808	0	genome.wustl.edu	37	chr19	53058311	53058311	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	aagtgtaatgagtgcagcaaGaccttcagtaacaggtcatc	10	8	2	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	19	53058311	53058311	G	A	SNP	ZNF808	ENST00000487863	human	ensembl	69_37n	1	known	silent	c.1935	p.K645	0.614	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF808	HGNC	ENSG00000198482	37	0	0	54	10	15.62	-	-	-	A	53058311	G	A	53058311	2	1	962	1	0	0	0	0	0	0	0	1	18266	933	33	2		2	ZNF808	19	53058311	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	48635667	53058311	6070672	47	76516										
ZNF805	0	genome.wustl.edu	37	chr19	57765471	57765471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	actggggagaagccatatgtGtgtagtgaatgcggaaaggc	16	5	0	2			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	19	57765471	57765471	G	A	SNP	ZNF805	ENST00000414468	human	ensembl	69_37n	1	known	silent	c.1284	p.V428	0.440	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524	25	0	0	20	14	41.18	-	-	-	A	57765471	G	A	57765471	2	1	962	1	0	0	0	0	0	0	0	1	18265	1364	48	4		4	ZNF805	19	57765471	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	4707160	57765471	1363512	48	76517										
SNAP25	0	genome.wustl.edu	37	chr20	10273586	10273586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tcaaccaagacatgaaggagGctgagaaaaatttaaaagat	9	5	1	4			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	20	10273586	10273586	G	T	SNP	SNAP25	ENST00000304886	human	ensembl	69_37n	1	known	missense	c.220	p.A74S	1.000	superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639	29	0	0	5	12	70.59	-	-	-	T	10273586	G	T	10273586	3	4	962	1	0	0	0	0	1	0	0	0	14919	1203	42	4	234	4	SNAP25	20	10273586	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09		10273586	52751934	49	76518										
SLC24A3	0	genome.wustl.edu	37	chr20	19664897	19664897	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	cacaccagctttccttctctGaggctggccttcgaatcatg	8	14	2	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	20	19664897	19664897	G	C	SNP	SLC24A3	ENST00000328041	human	ensembl	69_37n	1	known	missense	c.979	p.E327Q	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A3	HGNC	ENSG00000185052	43	0	0	31	25	44.64	-	-	-	C	19664897	G	C	19664897	3	2	962	1	0	0	0	0	1	0	0	0	14556	1291	45	2	1021	2	SLC24A3	20	19664897	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	9391311	19664897	43360623	50	76519										
POFUT1	0	genome.wustl.edu	37	chr20	30803131	30803131	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ctccaggcttaccatcgggtCatcagcttggaggatttcat	10	11	3	0			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	20	30803131	30803131	C	T	SNP	POFUT1	ENST00000375749	human	ensembl	69_37n	1	known	silent	c.306	p.V102	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346	23	0	0	29	9	23.68	-	-	-	T	30803131	C	T	30803131	2	4	962	1	0	0	0	0	0	0	0	1	12257	813	29	2		2	POFUT1	20	30803131	Silent	SNP	C	TCGA-OL-A5D7-01A-11D-A27P-09	11138234	30803131	32222389	51	76520										
HNF4A	0	genome.wustl.edu	37	chr20	43036108	43036108	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	tgcttccgggctggcatgaaGaaggaaggtgagcctcggcc	16	10	0	3			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	20	43036108	43036108	G	A	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	1	known	silent	c.378	p.K126	1.000	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	8	0	0	14	7	33.33	-	-	-	A	43036108	G	A	43036108	2	1	962	1	0	0	0	0	0	0	0	1	7304	933	33	2		2	HNF4A	20	43036108	Silent	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	12232977	43036108	19989412	52	76521										
NHS	0	genome.wustl.edu	37	chrX	17750269	17750269	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	aagagccccatactgcccaaAcctcctggggagctcacagc	9	16	1	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	X	17750269	17750269	A	G	SNP	NHS	ENST00000380060	human	ensembl	69_37n	1	known	silent	c.4578	p.K1526	0.911	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	41	0	0	41	5	10.87	-	-	-	G	17750269	A	G	17750269	2	3	962	1	0	0	0	0	0	0	0	1	10483	40	2	5		5	NHS	23	17750269	Silent	SNP	A	TCGA-OL-A5D7-01A-11D-A27P-09		17750269	137520291	53	76522										
BCOR	0	genome.wustl.edu	37	chrX	39922993	39922993	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	ggcctcaggctgagtggcctGggtcacttccttcctgcttt	12	13	2	1			TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	X	39922993	39922993	G	T	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3715	p.Q1239K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	81	0	0	54	23	29.87	-	-	-	T	39922993	G	T	39922993	3	4	962	1	0	0	0	0	1	0	0	0	1390	1357	47	4	1584	4	BCOR	23	39922993	Missense_Mutation	SNP	G	TCGA-OL-A5D7-01A-11D-A27P-09	22172724	39922993	115347567	54	76523										
KDM6A	0	genome.wustl.edu	37	chrX	44833952	44833952	+	Frame_Shift_Del	DEL	T	T	-													0.127272727272727	7	0.311564534800497	1.72666666666667	2.294	1.45650793650794	1	1	0	actacagtttacagtctgacTactggaaggttagtgtacat							TCGA-OL-A5D7-01A-11D-A27P-09	TCGA-OL-A5D7-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eec1b52b-f280-4731-8860-a57a790cdaac	1928b73f-4080-4d99-980f-7b7cd456a955	X	44833952	44833952	T	-	DEL	KDM6A	ENST00000382899	human	ensembl	69_37n	1	known	frame_shift_del	c.376	p.Y126fs	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	40	0	0	26	20	41.67	-	-	-	-	44833952	T	-	44833952	7	5	962	1	0	1	0	1	0	0	0	0	8190	1522	53	0	390	0	KDM6A	23	44833952	Frame_Shift_Del	DEL	T	TCGA-OL-A5D7-01A-11D-A27P-09	4910959	44833952	110436608	55	76524										
SF3B4	0	genome.wustl.edu	37	chr1	149898647	149898648	+	Frame_Shift_Del	DEL	AG	AG	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	agcaacttctcatcaatctcAgggtccaggttcccaatgaa							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	1	149898647	149898648	AG	-	DEL	SF3B4	ENST00000271628	human	ensembl	69_37n	-1	known	frame_shift_del	c.327_326	p.P109fs	0.926:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	131	0	0	558	82	12.65	-	-	-	-	149898648	AG	-	149898647	7	5	963	1	0	1	0	1	0	0	0	0	14241	175	7	0	963	0	SF3B4	1	149898647	Frame_Shift_Del	DEL	AG	TCGA-OL-A5D8-01A-11D-A27P-09		149898647	99351974	1	76525										
HMCN1	0	genome.wustl.edu	37	chr1	186086186	186086186	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gtggatgacactgcaacctaTgaatgtactgtgacaaacgg	11	8	0	3			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	1	186086186	186086186	T	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	1	known	nonsense	c.11622	p.Y3874*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	62	0	0	47	20	29.85	-	-	-	A	186086186	T	A	186086186	4	1	963	1	0	0	0	0	0	1	0	0	7271	1471	51	5	11924	5	HMCN1	1	186086186	Nonsense_Mutation	SNP	T	TCGA-OL-A5D8-01A-11D-A27P-09	36187539	186086186	63164435	2	76526										
TMEM18	0	genome.wustl.edu	37	chr2	676599	676599	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gaccagaggcacggaggtgaGgggagcacggctttctgccc	17	11	1	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	676599	676599	G	C	SNP	TMEM18	ENST00000405941	human	ensembl	69_37n	-1	novel	missense	c.41	p.P14R	0.001	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	62	0	0	103	17	14.17	-	-	-	C	676599	G	C	676599	3	2	963	1	0	0	0	0	1	0	0	0	16193	1015	35	4		4	TMEM18	2	676599	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09		676599	242522774	3	76527										
KCNS3	0	genome.wustl.edu	37	chr2	18112885	18112885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	cctccatcgtggccatgtgcGttcacagcatgtcggagttc	11	13	1	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	18112885	18112885	G	T	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	1	known	missense	c.610	p.V204F	0.164	prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	41	0	0	63	17	21.25	-	-	-	T	18112885	G	T	18112885	3	4	963	1	0	0	0	0	1	0	0	0	8144	1145	40	3	612	3	KCNS3	2	18112885	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	17436286	18112885	225086488	4	76528										
NCOA1	0	genome.wustl.edu	37	chr2	24949504	24949504	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	attgataaccaatttggacaAccaggaacaggcgatcagat	9	8	1	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	24949504	24949504	A	T	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	1	known	missense	c.2646	p.Q882H	0.993	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	65	0	0	26	6	18.75	-	-	-	T	24949504	A	T	24949504	3	4	963	1	0	0	0	0	1	0	0	0	10300	40	2	5	2688	5	NCOA1	2	24949504	Missense_Mutation	SNP	A	TCGA-OL-A5D8-01A-11D-A27P-09	6836619	24949504	218249869	5	76529										
EHD3	0	genome.wustl.edu	37	chr2	31483605	31483605	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	tggtccttggggaagatcgtGaacaccccagaggtgatccg	14	10	0	4			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31483605	31483605	G	A	SNP	EHD3	ENST00000322054	human	ensembl	69_37n	1	known	silent	c.732	p.V244	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	51	0	0	61	63	50.81	-	-	-	A	31483605	G	A	31483605	2	1	963	1	0	0	0	0	0	0	0	1	5014	1277	45	2		2	EHD3	2	31483605	Silent	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	6534101	31483605	211715768	6	76530										
EHD3	0	genome.wustl.edu	37	chr2	31489433	31489433	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	tctggaagctggccgacattGacaaggatggcatgctggac	14	9	1	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31489433	31489433	G	A	SNP	EHD3	ENST00000322054	human	ensembl	69_37n	1	known	missense	c.1471	p.D491N	1.000	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	51	0	0	43	51	54.26	-	-	-	A	31489433	G	A	31489433	3	1	963	1	0	0	0	0	1	0	0	0	5014	1290	45	2	1493	2	EHD3	2	31489433	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	5828	31489433	211709940	7	76531										
XDH	0	genome.wustl.edu	37	chr2	31573005	31573005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gaaggccgtgttggagggaaGgttggttttgcacagccgcc	17	8	0	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31573005	31573005	G	A	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.2716	p.L906F	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	52	0	0	73	9	10.98	-	-	-	A	31573005	G	A	31573005	3	1	963	1	0	0	0	0	1	0	0	0	17523	1000	35	4	1333	4	XDH	2	31573005	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	83572	31573005	211626368	8	76532										
HNRPLL	0	genome.wustl.edu	37	chr2	38818727	38818728	+	Frame_Shift_Del	DEL	CA	CA	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gtctgcttccaccacagattCacagagtcctcgaacatgga							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	38818727	38818728	CA	-	DEL	HNRPLL	ENST00000449105	human	ensembl	69_37n	-1	known	frame_shift_del	c.253_252	p.C84fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRPLL	HGNC	ENSG00000143889	16	0	0	21	6	22.22	-	-	-	-	38818728	CA	-	38818727	7	5	963	1	0	1	0	1	0	0	0	0	7328	835	29	0	1423	0	HNRPLL	2	38818727	Frame_Shift_Del	DEL	CA	TCGA-OL-A5D8-01A-11D-A27P-09	7245722	38818727	204380646	9	76533										
PLEKHB2	0	genome.wustl.edu	37	chr2	132110828	132110828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	aacatggtttgcagggaagaGggcgcccagcctccccacag	13	13	0	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	132110828	132110828	G	T	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	1	known	missense	c.659	p.R220M	0.981	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	31	0	0	26	9	25.71	-	-	-	T	132110828	G	T	132110828	3	4	963	1	0	0	0	0	1	0	0	0	12139	1015	35	4		4	PLEKHB2	2	132110828	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	93292101	132110828	111088545	10	76534										
TTN	0	genome.wustl.edu	37	chr2	179416362	179416362	+	Frame_Shift_Del	DEL	G	G	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	ataataatcacttacctactGgagaaacagctaaggtaaat							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	179416362	179416362	G	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.83561	p.P27854fs	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0	11	2	15.38	-	-	-	-	179416362	G	-	179416362	7	5	963	1	0	1	0	1	0	0	0	0	16832	1348	47	0	16826	0	TTN	2	179416362	Frame_Shift_Del	DEL	G	TCGA-OL-A5D8-01A-11D-A27P-09	47305534	179416362	63783011	11	76535										
RP1L1	0	genome.wustl.edu	37	chr8	10468681	10468681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	ctgcacctgtggtctcgtccGccaactcatatgtcatgagt	9	13	3	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	8	10468681	10468681	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.2927	p.A976V	0.010	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	20	0	0	22	16	42.11	-	-	-	A	10468681	G	A	10468681	3	1	963	1	0	0	0	0	1	0	0	0	13619	1087	38	1	4279	1	RP1L1	8	10468681	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09		10468681	135895341	12	76536										
TLR4	0	genome.wustl.edu	37	chr9	120475369	120475369	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	ctggtgagtgtgactattgaAagggtaaaagacttttctta	11	4	1	4			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	9	120475369	120475369	A	C	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	1	known	missense	c.963	p.E321D	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	51	0	0	30	14	31.82	-	-	-	C	120475369	A	C	120475369	3	2	963	1	0	0	0	0	1	0	0	0	16048	11	1	5	973	5	TLR4	9	120475369	Missense_Mutation	SNP	A	TCGA-OL-A5D8-01A-11D-A27P-09		120475369	20738062	13	76537										
GATA3	0	genome.wustl.edu	37	chr10	8106093	8106094	+	Frame_Shift_Ins	INS	-	-	G													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gcccctcattaagcccaagcINSgaaggctggtaagttctcgg							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	10	8106093	8106094	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	frame_shift_ins	c.916_917	p.R307fs	1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	50	0	0	36	15	29.41	-	-	-	G	8106094	-	G	8106093	7	5	963	1	0	1	1	0	0	0	0	0	6305	760	27	0	926	0	GATA3	10	8106093	Frame_Shift_Ins	INS	-	TCGA-OL-A5D8-01A-11D-A27P-09		8106093	127428654	14	76538										
CUL2	0	genome.wustl.edu	37	chr10	35314087	35314087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	cagataatgtaaccatgtaaGtttccttccactgaaatgtt	6	8	0	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	10	35314087	35314087	G	T	SNP	CUL2	ENST00000537177	human	ensembl	69_37n	-1	known	missense	c.1714	p.L572I	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094	52	0	0	32	22	40.74	-	-	-	T	35314087	G	T	35314087	3	4	963	1	0	0	0	0	1	0	0	0	4086	1029	36	4	600	4	CUL2	10	35314087	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	27207994	35314087	100220660	15	76539										
CARNS1	0	genome.wustl.edu	37	chr11	67184989	67184989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	tgccgcccacaggctgcttcCctggctcctggcgccaggac	12	18	0	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	11	67184989	67184989	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	1	known	missense	c.115	p.P39S	0.932	superfamily_TIL_dom	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	79	0	0	45	24	34.78	-	-	-	T	67184989	C	T	67184989	3	4	963	1	0	0	0	0	1	0	0	0	2681	623	22	4	121	4	CARNS1	11	67184989	Missense_Mutation	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09		67184989	67821527	16	76540										
C11orf53	0	genome.wustl.edu	37	chr11	111156557	111156557	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gctggggctcagtcatactcGctgcatgctctggaagatct	12	11	4	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	11	111156557	111156557	G	A	SNP	C11orf53	ENST00000280325	human	ensembl	69_37n	1	known	silent	c.489	p.S163	0.054	NULL	NULL	-	no_errors	C11orf53	HGNC	ENSG00000150750	40	0	0	8	17	68	-	-	-	A	111156557	G	A	111156557	2	1	963	1	0	0	0	0	0	0	0	1	1659	1074	38	1		1	C11orf53	11	111156557	Silent	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	43971568	111156557	23849959	17	76541										
FMNL3	0	genome.wustl.edu	37	chr12	50055828	50055828	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	atcattcagaaattcccgcaCccacctgcagataaaggaaa	6	12	2	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	12	50055828	50055828	C	G	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.373	p.V125L	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	48	0	0	26	17	39.53	-	-	-	G	50055828	C	G	50055828	3	3	963	1	0	0	0	0	1	0	0	0	5999	507	18	4	2798	4	FMNL3	12	50055828	Missense_Mutation	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09		50055828	83796067	18	76542										
RPGRIP1	0	genome.wustl.edu	37	chr14	21794169	21794169	+	Frame_Shift_Del	DEL	C	C	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	aacaacccctactttagagaCcaggctcgattcccagtgct							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	14	21794169	21794169	C	-	DEL	RPGRIP1	ENST00000206660	human	ensembl	69_37n	1	known	frame_shift_del	c.2547	p.Q850fs	0.987	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	103	0	0	66	32	32.65	-	-	-	-	21794169	C	-	21794169	7	5	963	1	0	1	0	1	0	0	0	0	13635	506	18	0	2609	0	RPGRIP1	14	21794169	Frame_Shift_Del	DEL	C	TCGA-OL-A5D8-01A-11D-A27P-09		21794169	85555371	19	76543										
HEATR5A	0	genome.wustl.edu	37	chr14	31844038	31844038	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	ctaccacacagtgcaccagcTcgtccttccagggtcacctg	8	17	1	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	14	31844038	31844038	T	C	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.728	p.E243G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	26	0	0	21	4	16	-	-	-	C	31844038	T	C	31844038	3	2	963	1	0	0	0	0	1	0	0	0	7082	1538	54	5	4395	5	HEATR5A	14	31844038	Missense_Mutation	SNP	T	TCGA-OL-A5D8-01A-11D-A27P-09	10049869	31844038	75505502	20	76544										
APBA2	0	genome.wustl.edu	37	chr15	29346952	29346952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	agtcgctgaacctccttcccGaggccaagcaccccggagac	10	17	0	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	15	29346952	29346952	G	A	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	1	known	missense	c.865	p.E289K	0.991	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	91	0	0	76	37	32.74	-	-	-	A	29346952	G	A	29346952	3	1	963	1	0	0	0	0	1	0	0	0	758	1059	37	1	867	1	APBA2	15	29346952	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09		29346952	73184440	21	76545										
IRX3	0	genome.wustl.edu	37	chr16	54319430	54319431	+	Frame_Shift_Del	DEL	GC	GC	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gggtccccgaactggtactgGccatacgggtagaaggcggg							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	16	54319430	54319431	GC	-	DEL	IRX3	ENST00000329734	human	ensembl	69_37n	-1	known	frame_shift_del	c.363_362	p.G121fs	1.000:1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX3	HGNC	ENSG00000177508	46	0	0	11	25	67.57	-	-	-	-	54319431	GC	-	54319430	7	5	963	1	0	1	0	1	0	0	0	0	7899	1190	42	0	1154	0	IRX3	16	54319430	Frame_Shift_Del	DEL	GC	TCGA-OL-A5D8-01A-11D-A27P-09		54319430	36035323	22	76546										
MTHFSD	0	genome.wustl.edu	37	chr16	86585647	86585647	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	aagtggaattacctgcagcaCcagcagccgaacgccttcca	9	14	0	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	16	86585647	86585647	C	T	SNP	MTHFSD	ENST00000566469	human	ensembl	69_37n	-1	putative	nonsense	c.210	p.W70*	0.992	pfam_FTHF_cligase	pfam_FTHF_cligase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTHFSD	HGNC	ENSG00000103248	74	0	0	31	4	11.43	-	-	-	T	86585647	C	T	86585647	4	4	963	1	0	0	0	0	0	1	0	0	10005	507	18	4	946	4	MTHFSD	16	86585647	Nonsense_Mutation	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09	32266217	86585647	3769106	23	76547										
NCOR1	0	genome.wustl.edu	37	chr17	15965426	15965426	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	acaagagactgacatgattcGtagctgagcagttggatcca	11	8	0	4			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	17	15965426	15965426	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.5380	p.R1794*	0.994	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	57	0	0	20	20	50	-	-	-	A	15965426	G	A	15965426	4	1	963	1	0	0	0	0	0	1	0	0	10307	1153	40	1	1986	1	NCOR1	17	15965426	Nonsense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09		15965426	65229784	24	76548										
NARS	0	genome.wustl.edu	37	chr18	55274371	55274371	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	aagacaacttcatactcagcCaggtgccttcgtgttctgga	9	11	3	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	18	55274371	55274371	C	G	SNP	NARS	ENST00000256854	human	ensembl	69_37n	-1	known	silent	c.996	p.L332	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS	HGNC	ENSG00000134440	59	0	0	29	18	38.3	-	-	-	G	55274371	C	G	55274371	2	3	963	1	0	0	0	0	0	0	0	1	10242	581	21	4		4	NARS	18	55274371	Silent	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09		55274371	22802877	25	76549										
CDH7	0	genome.wustl.edu	37	chr18	63529956	63529956	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	cttccggagacaggaacaatCagtttactatctgccaattt	7	10	2	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	18	63529956	63529956	C	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	1	known	nonsense	c.1667	p.S556*	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	66	0	0	41	27	39.71	-	-	-	A	63529956	C	A	63529956	4	1	963	1	0	0	0	0	0	1	0	0	3144	838	29	2	1705	2	CDH7	18	63529956	Nonsense_Mutation	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09	8255585	63529956	14547292	26	76550										
TRPM2	0	genome.wustl.edu	37	chr21	45821603	45821603	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gtgggcacccccgcggcccgCgcccgtgccttcttcaccgc	12	21	2	0			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	21	45821603	45821603	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	1	known	silent	c.2361	p.R787	0.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	83	0	0	37	43	53.75	-	-	-	T	45821603	C	T	45821603	2	4	963	1	0	0	0	0	0	0	0	1	16682	755	27	1		1	TRPM2	21	45821603	Silent	SNP	C	TCGA-OL-A5D8-01A-11D-A27P-09		45821603	2308292	27	76551										
TLR8	0	genome.wustl.edu	37	chrX	12940143	12940143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	gtatttgaggctacggcagcGgatctgtaagagctccatcc	12	10	1	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	12940143	12940143	G	A	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.2984	p.R995Q	0.941	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	89	0	0	41	17	29.31	-	-	-	A	12940143	G	A	12940143	3	1	963	1	0	0	0	0	1	0	0	0	16052	1116	39	1	2990	1	TLR8	23	12940143	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09		12940143	142330417	28	76552										
DMD	0	genome.wustl.edu	37	chrX	31198556	31198556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	actcgaccagaaaaaaagcaGctttggcagatgtcataatt	8	8	1	2			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	31198556	31198556	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.10017	p.S3339R	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_Znf_ZZ	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	40	0	0	21	13	38.24	-	-	-	T	31198556	G	T	31198556	3	4	963	1	0	0	0	0	1	0	0	0	4616	962	34	4	1174	4	DMD	23	31198556	Missense_Mutation	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	18258413	31198556	124072004	29	76553										
HDAC6	0	genome.wustl.edu	37	chrX	48681345	48681345	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	tagaagacagagaaggacccTccagttctaagttggtcacc	10	10	2	3			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	48681345	48681345	T	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	1	known	missense	c.2578	p.S860T	0.000	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	24	0	0	13	10	43.48	-	-	-	A	48681345	T	A	48681345	3	1	963	1	0	0	0	0	1	0	0	0	7062	1551	54	5	2630	5	HDAC6	23	48681345	Missense_Mutation	SNP	T	TCGA-OL-A5D8-01A-11D-A27P-09	17482789	48681345	106589215	30	76554										
CSTF2	0	genome.wustl.edu	37	chrX	100093207	100093207	+	RNA	DEL	T	T	-													0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	catcattaaaactcactaccTtttttttttcctctgcacag							TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	100093207	100093207	T	-	DEL	CSTF2	ENST00000486615	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CSTF2	HGNC	ENSG00000101811	16	0	0	8	3	27.27	-	-	-	-	100093207	T	-	100093207	6	5	963	0	1	1	0	1	0	0	0	0	4016	1624	56	0		0	CSTF2	23	100093207	RNA	DEL	T	TCGA-OL-A5D8-01A-11D-A27P-09	51411862	100093207	55177353	31	76555										
RNF113A	0	genome.wustl.edu	37	chrX	119004944	119004944	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0625	2	0.871886716160037	1.09850746268657	0	1.37313432835821	0.4	0.991179622791967	0	ttgcagctgtctccgaagccGcagaagccagtctctttgta	10	12	2	1			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	119004944	119004944	G	A	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	silent	c.633	p.C211	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	18	0	0	16	10	38.46	-	-	-	A	119004944	G	A	119004944	2	1	963	1	0	0	0	0	0	0	0	1	13513	1079	38	1		1	RNF113A	23	119004944	Silent	SNP	G	TCGA-OL-A5D8-01A-11D-A27P-09	18911737	119004944	36265616	32	76556										
NBPF3	0	genome.wustl.edu	37	chr1	21809855	21809855	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	aggcaccacctggccttccaGatgggagtcatattcccaca	9	14	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	21809855	21809855	G	C	SNP	NBPF3	ENST00000318249	human	ensembl	69_37n	1	known	missense	c.1878	p.Q626H	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF3	HGNC	ENSG00000142794	24	0	0	19	4	17.39	-	-	-	C	21809855	G	C	21809855	3	2	964	1	0	0	0	0	1	0	0	0	10269	933	33	2	1932	2	NBPF3	1	21809855	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		21809855	227440766	1	76557										
AGBL4	0	genome.wustl.edu	37	chr1	49119117	49119117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gctggcttacaaggaagtcaAtgatccctagggaaagagaa	12	7	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	49119117	49119117	A	G	SNP	AGBL4	ENST00000371839	human	ensembl	69_37n	-1	known	missense	c.731	p.I244T	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094	42	0	0	30	18	37.5	-	-	-	G	49119117	A	G	49119117	3	3	964	1	0	0	0	0	1	0	0	0	377	101	4	5	808	5	AGBL4	1	49119117	Missense_Mutation	SNP	A	TCGA-OL-A5DA-01A-11D-A27P-09	27309262	49119117	200131504	2	76558										
C1orf168	0	genome.wustl.edu	37	chr1	57285049	57285049	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	caatccgctttcctctgtctCtgctagccagggagcaatca	8	14	3	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	57285049	57285049	C	G	SNP	C1orf168	ENST00000484327	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf168	HGNC	ENSG00000187889	33	0	0	44	6	12	-	-	-	G	57285049	C	G	57285049	1	3	964	0	1	0	0	0	0	0	0	0	2031	928	32	2		2	C1orf168	1	57285049	RNA	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	8165932	57285049	191965572	3	76559										
FCRL5	0	genome.wustl.edu	37	chr1	157514053	157514053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	aggttccaccaacacttactCtgcacctgtatccaggatct	6	14	2	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	157514053	157514053	C	G	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.843	p.Q281H	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	31	0	0	53	7	11.67	-	-	-	G	157514053	C	G	157514053	3	3	964	1	0	0	0	0	1	0	0	0	5844	927	32	2	2142	2	FCRL5	1	157514053	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	100229004	157514053	91736568	4	76560										
HHIPL2	0	genome.wustl.edu	37	chr1	222717464	222717464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agtaatcagagcagaggcccGggagattccggagaggcgtc	16	9	1	4			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	222717464	222717464	G	T	SNP	HHIPL2	ENST00000343410	human	ensembl	69_37n	-1	known	missense	c.389	p.P130Q	1.000	pfam_Folate_rcpt-like,superfamily_Saposin-like	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	27	0	0	25	15	37.5	-	-	-	T	222717464	G	T	222717464	3	4	964	1	0	0	0	0	1	0	0	0	7145	1116	39	3	1817	3	HHIPL2	1	222717464	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	65203411	222717464	26533157	5	76561										
RYR2	0	genome.wustl.edu	37	chr1	237550637	237550637	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gccgctttccagcagactctCtggagcgtggccccaatcag	11	15	2	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	1	237550637	237550637	C	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	silent	c.627	p.L209	0.076	pfam_Ins145_P3_rcpt,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	35	0	0	50	7	12.28	-	-	-	G	237550637	C	G	237550637	2	3	964	1	0	0	0	0	0	0	0	1	13855	900	32	2		2	RYR2	1	237550637	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	14833173	237550637	11699984	6	76562										
SLC1A4	0	genome.wustl.edu	37	chr2	65237810	65237810	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ggtgttaggagtggccttaaAgaaactaggctccgaaggag	15	6	0	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	2	65237810	65237810	A	C	SNP	SLC1A4	ENST00000234256	human	ensembl	69_37n	1	known	missense	c.713	p.K238T	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A4	HGNC	ENSG00000115902	92	0	0	66	18	21.43	-	-	-	C	65237810	A	C	65237810	3	2	964	1	0	0	0	0	1	0	0	0	14523	72	3	5	727	5	SLC1A4	2	65237810	Missense_Mutation	SNP	A	TCGA-OL-A5DA-01A-11D-A27P-09		65237810	177961563	7	76563										
INO80B	0	genome.wustl.edu	37	chr2	74683376	74683376	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acctcaagaaggagatcaatGagcggctgcttactgctcga	11	10	2	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	2	74683376	74683376	G	A	SNP	INO80B	ENST00000452361	human	ensembl	69_37n	1	known	missense	c.517	p.E173K	1.000	NULL	pfam_PAPA1,pfam_Znf_HIT	-	no_errors	INO80B	HGNC	ENSG00000115274	51	0	0	22	7	24.14	-	-	-	A	74683376	G	A	74683376	3	1	964	1	0	0	0	0	1	0	0	0	7801	1291	45	2	531	2	INO80B	2	74683376	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	9445566	74683376	168515997	8	76564										
ABCB11	0	genome.wustl.edu	37	chr2	169851965	169851965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tctcattttctgtatctgacGagctgcggcaatgacccaaa	8	11	3	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	2	169851965	169851965	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.505	p.R169C	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	37	0	0	29	10	25.64	-	-	-	A	169851965	G	A	169851965	3	1	964	1	0	0	0	0	1	0	0	0	42	1058	37	1	3548	1	ABCB11	2	169851965	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	95168589	169851965	73347408	9	76565										
IGFBP5	0	genome.wustl.edu	37	chr2	217543752	217543752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gatcttgggggagtaggtctCctcggccatctcagaggtgg	16	9	3	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	2	217543752	217543752	C	T	SNP	IGFBP5	ENST00000233813	human	ensembl	69_37n	-1	known	missense	c.388	p.E130K	1.000	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-5	-	no_errors	IGFBP5	HGNC	ENSG00000115461	109	1	0.91	119	20	14.39	-	-	-	T	217543752	C	T	217543752	3	4	964	1	0	0	0	0	1	0	0	0	7636	864	30	2	442	2	IGFBP5	2	217543752	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	47691787	217543752	25655621	10	76566										
IHH	0	genome.wustl.edu	37	chr2	219920403	219920403	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tcgatgacctggaaggctctCagcctgtgaggctcgcggtc	14	12	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	2	219920403	219920403	C	G	SNP	IHH	ENST00000295731	human	ensembl	69_37n	-1	known	silent	c.762	p.L254	0.003	pirsf_Hedgehog,pfam_Hint_dom,smart_Hint_dom_N,pfscan_Intein_splice_site	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pfscan_Intein_splice_site,prints_Hedgehog	-	no_errors	IHH	HGNC	ENSG00000163501	70	0	0	71	8	10.13	-	-	-	G	219920403	C	G	219920403	2	3	964	1	0	0	0	0	0	0	0	1	7661	813	29	2		2	IHH	2	219920403	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	2376651	219920403	23278970	11	76567										
HDAC11	0	genome.wustl.edu	37	chr3	13544400	13544400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acagggcaatgggcatgagcGagacttcatggacgacaagc	14	9	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	3	13544400	13544400	G	A	SNP	HDAC11	ENST00000295757	human	ensembl	69_37n	1	known	missense	c.569	p.R190Q	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	50	0	0	37	20	35.09	-	-	-	A	13544400	G	A	13544400	3	1	964	1	0	0	0	0	1	0	0	0	7057	1058	37	1	599	1	HDAC11	3	13544400	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		13544400	184478030	12	76568										
BSN	0	genome.wustl.edu	37	chr3	49698153	49698153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agcatgagtccaccaaactgCgcaagaagcaggcagagctg	12	11	0	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	3	49698153	49698153	C	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	1	known	missense	c.8875	p.R2959C	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	46	0	0	46	10	17.86	-	-	-	T	49698153	C	T	49698153	3	4	964	1	0	0	0	0	1	0	0	0	1538	768	27	1	8897	1	BSN	3	49698153	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	36153753	49698153	148324277	13	76569										
OR5H2	0	genome.wustl.edu	37	chr3	98001967	98001967	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ctttgttgatgcttggatatCttccacagtaactcccaaaa	6	10	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	3	98001967	98001967	C	T	SNP	OR5H2	ENST00000355273	human	ensembl	69_37n	1	known	missense	c.236	p.S79F	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938	77	0	0	62	8	11.43	-	-	-	T	98001967	C	T	98001967	3	4	964	1	0	0	0	0	1	0	0	0	11235	913	32	2	238	2	OR5H2	3	98001967	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	48303814	98001967	100020463	14	76570										
PIK3CA	0	genome.wustl.edu	37	chr3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ggccagtacctcatggattaGaagatttgctgaaccctatt	9	9	1	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	29	0	0	19	4	17.39	-	-	-	A	178928079	G	A	178928079	3	1	964	1	0	0	0	0	1	0	0	0	11987	943	33	2	1383	2	PIK3CA	3	178928079	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	80926112	178928079	19094351	15	76571										
UBXN7	0	genome.wustl.edu	37	chr3	196096354	196096354	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acttataaaactgtatgtatCtctgaccttcctcactgtca	4	11	3	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	3	196096354	196096354	C	G	SNP	UBXN7	ENST00000296328	human	ensembl	69_37n	-1	known	missense	c.644	p.R215T	1.000	smart_UAS,pirsf_UCP037991_UAS/UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960	32	0	0	27	5	15.62	-	-	-	G	196096354	C	G	196096354	3	3	964	1	0	0	0	0	1	0	0	0	17015	913	32	2	845	2	UBXN7	3	196096354	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	17168275	196096354	1926076	16	76572										
AFAP1	0	genome.wustl.edu	37	chr4	7802238	7802238	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ggatgtttagaatccaaaccCgggatcacctcgcagccacg	10	13	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	4	7802238	7802238	C	T	SNP	AFAP1	ENST00000420658	human	ensembl	69_37n	-1	known	silent	c.1197	p.P399	0.072	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526	31	0	0	40	5	11.11	-	-	-	T	7802238	C	T	7802238	2	4	964	1	0	0	0	0	0	0	0	1	353	639	23	1		1	AFAP1	4	7802238	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		7802238	183352038	17	76573										
UBA6	0	genome.wustl.edu	37	chr4	68492133	68492133	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agttggaaaattgcattcctCtcatcttcactgctaatagg	7	9	3	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	4	68492133	68492133	C	T	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	silent	c.2463	p.E821	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	42	0	0	39	7	15.22	-	-	-	T	68492133	C	T	68492133	2	4	964	1	0	0	0	0	0	0	0	1	16929	912	32	2		2	UBA6	4	68492133	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	60689895	68492133	122662143	18	76574										
SFRP2	0	genome.wustl.edu	37	chr4	154709955	154709956	+	In_Frame_Ins	INS	-	-	AGC													0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agcagtgcgaggcgaggaagINSagcagcagcagcgagccagg							TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	4	154709955	154709956	-	AGC	INS	SFRP2	ENST00000274063	human	ensembl	69_37n	-1	known	in_frame_ins	c.33_32	p.12in_frame_insL	0.009:0.677	NULL	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP2	HGNC	ENSG00000145423	10	0	0	14	8	36.36	-	-	-	AGC	154709956	-	AGC	154709955	7	5	964	1	0	1	1	0	0	0	0	0	14250	929	33	0	866	0	SFRP2	4	154709955	In_Frame_Ins	INS	-	TCGA-OL-A5DA-01A-11D-A27P-09	86217822	154709955	36444321	19	76575										
TRIO	0	genome.wustl.edu	37	chr5	14507272	14507272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ggactgcgtggtgcgatgggGaagcctcactgaagggaaga	18	7	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	5	14507272	14507272	G	A	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	1	known	missense	c.8654	p.G2885E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	32	0	0	28	9	24.32	-	-	-	A	14507272	G	A	14507272	3	1	964	1	0	0	0	0	1	0	0	0	16648	1174	41	2	8876	2	TRIO	5	14507272	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		14507272	166407988	20	76576										
AGXT2L2	0	genome.wustl.edu	37	chr5	177641822	177641822	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	taccaagtaggcagcctcttCagttgctggtgtccttgtgg	12	10	2	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	5	177641822	177641822	C	T	SNP	AGXT2L2	ENST00000308158	human	ensembl	69_37n	-1	known	missense	c.1147	p.E383K	0.991	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L2	HGNC	ENSG00000175309	40	0	0	30	8	21.05	-	-	-	T	177641822	C	T	177641822	3	4	964	1	0	0	0	0	1	0	0	0	407	835	29	2	217	2	AGXT2L2	5	177641822	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	163134550	177641822	3273438	21	76577										
HIST1H3G	0	genome.wustl.edu	37	chr6	26271219	26271219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	cctctacgctctctccccacGaatgcggcgagcgagctgaa	10	16	2	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	6	26271219	26271219	G	A	SNP	HIST1H3G	ENST00000305910	human	ensembl	69_37n	-1	known	missense	c.394	p.R132C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	44	0	0	60	11	15.49	-	-	-	A	26271219	G	A	26271219	3	1	964	1	0	0	0	0	1	0	0	0	7212	1058	37	1	20	1	HIST1H3G	6	26271219	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		26271219	144843848	22	76578										
GLP1R	0	genome.wustl.edu	37	chr6	39046890	39046890	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	cccggccccaccccgcaggtGaacttcctcatctttgttcg	8	18	2	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	6	39046890	39046890	G	A	SNP	GLP1R	ENST00000373256	human	ensembl	69_37n	1	known	silent	c.957	p.V319	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	-	no_errors	GLP1R	HGNC	ENSG00000112164	27	0	0	51	7	12.07	-	-	-	A	39046890	G	A	39046890	2	1	964	1	0	0	0	0	0	0	0	1	6504	1277	45	2		2	GLP1R	6	39046890	Silent	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	12775671	39046890	132068177	23	76579										
KLC4	0	genome.wustl.edu	37	chr6	43034052	43034052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gtgatggtttagtgtcccgtGgtcaaggtgctacagcagct	14	8	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	6	43034052	43034052	G	T	SNP	KLC4	ENST00000259708	human	ensembl	69_37n	1	known	missense	c.634	p.G212C	0.998	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171	92	0	0	66	52	44.07	-	-	-	T	43034052	G	T	43034052	3	4	964	1	0	0	0	0	1	0	0	0	8389	1348	47	4	652	4	KLC4	6	43034052	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	3987162	43034052	128081015	24	76580										
PSMA2	0	genome.wustl.edu	37	chr7	42957235	42957235	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	aagcctcctaaatccagcttCattgcagattccaacttcta	4	13	2	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	7	42957235	42957235	C	T	SNP	PSMA2	ENST00000223321	human	ensembl	69_37n	-1	known	missense	c.643	p.E215K	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA2	HGNC	ENSG00000106588	32	0	0	34	6	15	-	-	-	T	42957235	C	T	42957235	3	4	964	1	0	0	0	0	1	0	0	0	12747	835	29	2	65	2	PSMA2	7	42957235	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		42957235	116181428	25	76581										
CSMD1	0	genome.wustl.edu	37	chr8	2975988	2975988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tgacaagtgaggacaggatgGcctattagaatgtacccagg	13	7	0	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	8	2975988	2975988	G	A	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.4804	p.P1602S	0.916	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	80	0	0	89	30	25.21	-	-	-	A	2975988	G	A	2975988	3	1	964	1	0	0	0	0	1	0	0	0	3976	1190	42	4	4447	4	CSMD1	8	2975988	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		2975988	143388034	26	76582										
RECQL4	0	genome.wustl.edu	37	chr8	145739720	145739720	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agtgcctcaggtgtcagcatCagcacgtgtacctgggctgc	13	12	3	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	8	145739720	145739720	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	RECQL4	HGNC	ENSG00000160957	31	0	0	39	7	15.22	-	-	-	T	145739720	C	T	145739720	1	4	964	0	1	0	0	0	0	0	0	0	13285	813	29	2		2	RECQL4	8	145739720	RNA	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	142763732	145739720	624302	27	76583										
CUBN	0	genome.wustl.edu	37	chr10	16990571	16990571	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agggcgctgctgaaggatgtGataggatggggcatgtcggt	19	5	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	10	16990571	16990571	G	A	SNP	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	silent	c.5115	p.I1705	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	41	0	0	32	5	13.51	-	-	-	A	16990571	G	A	16990571	2	1	964	1	0	0	0	0	0	0	0	1	4082	1280	45	2		2	CUBN	10	16990571	Silent	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		16990571	118544176	28	76584										
ZDHHC5	0	genome.wustl.edu	37	chr11	57466134	57466134	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ggaaccagagagcttccgttCtcctacctttggcaaaagtt	9	11	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	11	57466134	57466134	C	G	SNP	ZDHHC5	ENST00000287169	human	ensembl	69_37n	1	known	missense	c.1226	p.S409C	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599	80	0	0	40	13	24.53	-	-	-	G	57466134	C	G	57466134	3	3	964	1	0	0	0	0	1	0	0	0	17714	913	32	2	1264	2	ZDHHC5	11	57466134	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		57466134	77540382	29	76585										
CTTN	0	genome.wustl.edu	37	chr11	70279792	70279792	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gtacgagaacgatctggggaTcacagccgtcgccctgtacg	13	12	2	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	11	70279792	70279792	T	G	SNP	CTTN	ENST00000301843	human	ensembl	69_37n	1	known	missense	c.1484	p.I495S	0.998	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	60	0	0	51	19	27.14	-	-	-	G	70279792	T	G	70279792	3	3	964	1	0	0	0	0	1	0	0	0	4076	1435	50	5	1542	5	CTTN	11	70279792	Missense_Mutation	SNP	T	TCGA-OL-A5DA-01A-11D-A27P-09	12813658	70279792	64726724	30	76586										
B3GNT6	0	genome.wustl.edu	37	chr11	76751717	76751717	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tggaaggcgctgcacagcccCgcgctcagctgtgaccgggg	16	14	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	11	76751717	76751717	C	T	SNP	B3GNT6	ENST00000533140	human	ensembl	69_37n	1	known	silent	c.1122	p.P374	0.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT6	HGNC	ENSG00000198488	63	0	0	42	5	10.64	-	-	-	T	76751717	C	T	76751717	2	4	964	1	0	0	0	0	0	0	0	1	1265	639	23	1		1	B3GNT6	11	76751717	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	6471925	76751717	58254799	31	76587										
WNK1	0	genome.wustl.edu	37	chr12	988982	988982	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	cagctggcattactcagcctCtgctcacgttggcttcatct	8	14	5	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	12	988982	988982	C	T	SNP	WNK1	ENST00000530271	human	ensembl	69_37n	1	known	silent	c.4111	p.L1371	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	57	0	0	63	9	12.5	-	-	-	T	988982	C	T	988982	2	4	964	1	0	0	0	0	0	0	0	1	17474	912	32	2		2	WNK1	12	988982	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		988982	132862913	32	76588										
SCYL2	0	genome.wustl.edu	37	chr12	100732630	100732630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tcaatgctttgagtgttcctCctgctggtgcaaagcagacc	10	11	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	12	100732630	100732630	C	T	SNP	SCYL2	ENST00000360820	human	ensembl	69_37n	1	known	missense	c.2470	p.P824S	0.987	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	81	0	0	54	24	30.77	-	-	-	T	100732630	C	T	100732630	3	4	964	1	0	0	0	0	1	0	0	0	14036	855	30	2	2536	2	SCYL2	12	100732630	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	99743648	100732630	33119265	33	76589										
SLC46A3	0	genome.wustl.edu	37	chr13	29284961	29284961	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acagagaatggcacaatagtGaaaaggaacggcaccctggc	12	9	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	13	29284961	29284961	G	A	SNP	SLC46A3	ENST00000266943	human	ensembl	69_37n	-1	known	silent	c.1080	p.F360	0.007	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508	45	0	0	29	10	25.64	-	-	-	A	29284961	G	A	29284961	2	1	964	1	0	0	0	0	0	0	0	1	14735	1281	45	2		2	SLC46A3	13	29284961	Silent	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		29284961	85884917	34	76590										
ITGA11	0	genome.wustl.edu	37	chr15	68631949	68631949	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tagcacagctccattccagtCataggcaccgacggctccca	8	16	1	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	15	68631949	68631949	C	G	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	missense	c.1165	p.D389H	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	32	0	0	21	5	19.23	-	-	-	G	68631949	C	G	68631949	3	3	964	1	0	0	0	0	1	0	0	0	7928	826	29	2	2481	2	ITGA11	15	68631949	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		68631949	33899443	35	76591										
ISLR	0	genome.wustl.edu	37	chr15	74467586	74467586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gccctccaattgctcaagatGgacagcaacgagctgacctt	9	13	1	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	15	74467586	74467586	G	A	SNP	ISLR	ENST00000249842	human	ensembl	69_37n	1	known	missense	c.387	p.M129I	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ISLR	HGNC	ENSG00000129009	69	0	0	62	12	16.22	-	-	-	A	74467586	G	A	74467586	3	1	964	1	0	0	0	0	1	0	0	0	7912	1348	47	4	389	4	ISLR	15	74467586	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	5835637	74467586	28063806	36	76592										
AKAP13	0	genome.wustl.edu	37	chr15	86284594	86284594	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gagcgggaggagctccagcaGaagaagggcacataccagta	15	9	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	15	86284594	86284594	G	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.7938	p.Q2646H	0.163	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	38	0	0	27	4	12.5	-	-	-	C	86284594	G	C	86284594	3	2	964	1	0	0	0	0	1	0	0	0	449	933	33	2	8130	2	AKAP13	15	86284594	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	11817008	86284594	16246798	37	76593										
SULT1A3	0	genome.wustl.edu	37	chr16	30205935	30205935	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gaggcagggcctgaggtgggCaggtgcagagggctgcactt	20	8	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	16	30205935	30205935	C	T	SNP	SULT1A3	ENST00000565342	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SULT1A3	HGNC	ENSG00000213599	13	0	0	27	8	22.86	-	-	-	T	30205935	C	T	30205935	1	4	964	0	1	0	0	0	0	0	0	0	15465	725	25	4		4	SULT1A3	16	30205935	RNA	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		30205935	60148818	38	76594										
GPR97	0	genome.wustl.edu	37	chr16	57719564	57719564	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ccctcctccagatgctggttCcgtgaagggacaaccatgta	10	13	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	16	57719564	57719564	C	T	SNP	GPR97	ENST00000333493	human	ensembl	69_37n	1	known	silent	c.1266	p.F422	0.687	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885	77	0	0	55	13	19.12	-	-	-	T	57719564	C	T	57719564	2	4	964	1	0	0	0	0	0	0	0	1	6771	854	30	2		2	GPR97	16	57719564	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	27513629	57719564	32635189	39	76595										
CDH1	0	genome.wustl.edu	37	chr16	68842603	68842603	+	Frame_Shift_Del	DEL	C	C	-													0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	attttgtcttcagatcaaatCcaacaaagacaaagaaggca							TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	16	68842603	68842603	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_del	c.539	p.N181fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	34	0	0	10	5	33.33	-	-	-	-	68842603	C	-	68842603	7	5	964	1	0	1	0	1	0	0	0	0	3124	855	30	0	557	0	CDH1	16	68842603	Frame_Shift_Del	DEL	C	TCGA-OL-A5DA-01A-11D-A27P-09	11123039	68842603	21512150	40	76596										
COIL	0	genome.wustl.edu	37	chr17	55023818	55023818	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ctcaccaggtaaggatgaaaGaatttctatatctacttgct	7	8	3	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	17	55023818	55023818	G	C	SNP	COIL	ENST00000240316	human	ensembl	69_37n	-1	known	missense	c.1543	p.L515V	1.000	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058	48	0	0	35	5	12.5	-	-	-	C	55023818	G	C	55023818	3	2	964	1	0	0	0	0	1	0	0	0	3695	942	33	2	199	2	COIL	17	55023818	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		55023818	26171392	41	76597										
ATP5A1	0	genome.wustl.edu	37	chr18	43675009	43675009	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tgcggcgtagactgagaaatAataacttaccagtcttttga	9	7	1	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	18	43675009	43675009	A	C	SNP	ATP5A1	ENST00000590156	human	ensembl	69_37n	-1	known	nonsense	c.149	p.L50*	0.010	NULL	NULL	-	no_errors	ATP5A1	HGNC	ENSG00000152234	53	0	0	33	18	35.29	-	-	-	C	43675009	A	C	43675009	4	2	964	1	0	0	0	0	0	1	0	0	1151	377	13	5		5	ATP5A1	18	43675009	Nonsense_Mutation	SNP	A	TCGA-OL-A5DA-01A-11D-A27P-09		43675009	34402239	42	76598										
DCC	0	genome.wustl.edu	37	chr18	50451672	50451672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tgtgacagatgatgacagtgGaatgtatacctgtgttgtca	12	5	1	4			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	18	50451672	50451672	G	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	1	known	missense	c.917	p.G306E	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	54	0	0	39	5	11.36	-	-	-	A	50451672	G	A	50451672	3	1	964	1	0	0	0	0	1	0	0	0	4313	1174	41	2	935	2	DCC	18	50451672	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	6776663	50451672	27625576	43	76599										
ADNP2	0	genome.wustl.edu	37	chr18	77895022	77895022	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	agactgtgggcaccaacattCtgcctgtgaatcagccagtg	11	11	2	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	18	77895022	77895022	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	69_37n	1	known	silent	c.1726	p.L576	0.971	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	36	0	0	34	5	12.82	-	-	-	T	77895022	C	T	77895022	2	4	964	1	0	0	0	0	0	0	0	1	324	912	32	2		2	ADNP2	18	77895022	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	27443350	77895022	182226	44	76600										
MUC16	0	genome.wustl.edu	37	chr19	9057901	9057901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gaaaacagtggtatcgtccaCagcggaggtgatacccattg	12	9	0	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	9057901	9057901	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.29545	p.V9849M	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	91	0	0	82	15	15.46	-	-	-	T	9057901	C	T	9057901	3	4	964	1	0	0	0	0	1	0	0	0	10045	478	17	4	14306	4	MUC16	19	9057901	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		9057901	50071082	45	76601										
SLC44A2	0	genome.wustl.edu	37	chr19	10747167	10747167	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tggcgctgggccaggtcacgCtggccggggcctttgcctcc	16	15	1	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	10747167	10747167	C	T	SNP	SLC44A2	ENST00000335757	human	ensembl	69_37n	1	known	silent	c.1402	p.L468	0.986	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	56	0	0	46	15	24.59	-	-	-	T	10747167	C	T	10747167	2	4	964	1	0	0	0	0	0	0	0	1	14725	796	28	4		4	SLC44A2	19	10747167	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	1689266	10747167	48381816	46	76602										
CHERP	0	genome.wustl.edu	37	chr19	16652789	16652789	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	cttctccatagtcatcttctCaaactcgggcccattgcgag	7	14	4	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	16652789	16652789	C	G	SNP	CHERP	ENST00000546361	human	ensembl	69_37n	-1	known	missense	c.91	p.E31Q	1.000	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872	59	0	0	51	6	10.53	-	-	-	G	16652789	C	G	16652789	3	3	964	1	0	0	0	0	1	0	0	0	3365	835	29	2	2723	2	CHERP	19	16652789	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	5905622	16652789	42476194	47	76603										
ZNF536	0	genome.wustl.edu	37	chr19	30934683	30934683	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	aggagaaggcccacgtgcccAtgagcggccagcccatgggc	15	14	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	30934683	30934683	A	T	SNP	ZNF536	ENST00000355537	human	ensembl	69_37n	1	known	missense	c.214	p.M72L	0.916	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	30	0	0	28	14	33.33	-	-	-	T	30934683	A	T	30934683	3	4	964	1	0	0	0	0	1	0	0	0	18070	217	8	5	216	5	ZNF536	19	30934683	Missense_Mutation	SNP	A	TCGA-OL-A5DA-01A-11D-A27P-09	14281894	30934683	28194300	48	76604										
HIF3A	0	genome.wustl.edu	37	chr19	46825083	46825083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tgcacccgccttccctgagcGaggctgccctggccgctgac	12	18	0	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	46825083	46825083	G	A	SNP	HIF3A	ENST00000377670	human	ensembl	69_37n	1	known	missense	c.1195	p.E399K	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440	72	0	0	88	11	11.11	-	-	-	A	46825083	G	A	46825083	3	1	964	1	0	0	0	0	1	0	0	0	7156	1059	37	1	1257	1	HIF3A	19	46825083	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	15890400	46825083	12303900	49	76605										
MYBPC2	0	genome.wustl.edu	37	chr19	50945508	50945508	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	atcaagttgatggtagagatCagcgacccagacctgaccct	10	11	2	4			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	19	50945508	50945508	C	T	SNP	MYBPC2	ENST00000357701	human	ensembl	69_37n	1	known	silent	c.840	p.I280	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPC2	HGNC	ENSG00000086967	31	0	0	17	5	22.73	-	-	-	T	50945508	C	T	50945508	2	4	964	1	0	0	0	0	0	0	0	1	10084	816	29	2		2	MYBPC2	19	50945508	Silent	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	4120425	50945508	8183475	50	76606										
CPXM1	0	genome.wustl.edu	37	chr20	2779433	2779433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	gtgggggtcacaaggggcccGgcagtcaccagtggggtggg	21	9	2	0			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	20	2779433	2779433	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	69_37n	-1	known	silent	c.279	p.A93	0.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	CPXM1	HGNC	ENSG00000088882	37	0	0	27	7	20.59	-	-	-	A	2779433	G	A	2779433	2	1	964	1	0	0	0	0	0	0	0	1	3867	1103	39	1		1	CPXM1	20	2779433	Silent	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		2779433	60246087	51	76607										
NCOA6	0	genome.wustl.edu	37	chr20	33364253	33364253	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acttttagcttgctggactcTtgattgtgaaagaaaaagaa	9	5	1	4			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	20	33364253	33364253	T	A	SNP	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	splice_site	c.236-2	e2-2	1.000	-	-	-	no_errors	NCOA6	HGNC	ENSG00000198646	20	0	0	18	4	18.18	-	-	-	A	33364253	T	A	33364253	5	1	964	1	0	0	0	0	0	0	1	0	10305	1623	56	5	6005	5	NCOA6	20	33364253	Splice_Site	SNP	T	TCGA-OL-A5DA-01A-11D-A27P-09	30584820	33364253	29661267	52	76608										
TSHZ2	0	genome.wustl.edu	37	chr20	51872795	51872795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ttattgcagtgactgtgcctCccagttcagaaccccttcta	7	13	2	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	20	51872795	51872795	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	missense	c.2798	p.S933F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	37	0	0	35	5	12.2	-	-	-	T	51872795	C	T	51872795	3	4	964	1	0	0	0	0	1	0	0	0	16720	855	30	2	2804	2	TSHZ2	20	51872795	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	18508542	51872795	11152725	53	76609										
ARFRP1	0	genome.wustl.edu	37	chr20	62337726	62337726	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	taccttgtcccacaaagactGcagctcttcctgccctccta	5	17	1	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	20	62337726	62337726	G	A	SNP	ARFRP1	ENST00000324228	human	ensembl	69_37n	-1	known	nonsense	c.247	p.Q83*	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246	32	0	0	26	9	25.71	-	-	-	A	62337726	G	A	62337726	4	1	964	1	0	0	0	0	0	1	0	0	858	1328	46	4	382	4	ARFRP1	20	62337726	Nonsense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	10464931	62337726	687794	54	76610										
MYH9	0	genome.wustl.edu	37	chr22	36708234	36708234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tttggggaaccagcactcctCgtccagcagggccagaatgc	12	13	0	1			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	22	36708234	36708234	C	T	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	missense	c.1588	p.E530K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	49	0	0	34	18	34.62	-	-	-	T	36708234	C	T	36708234	3	4	964	1	0	0	0	0	1	0	0	0	10114	893	31	1	4406	1	MYH9	22	36708234	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09		36708234	14596332	55	76611										
MAGEB16	0	genome.wustl.edu	37	chrX	35820503	35820503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	aggcagagagtcctcttgagGttcctcagagtttctgctcc	11	11	3	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	X	35820503	35820503	G	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	1	known	missense	c.286	p.V96I	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	40	0	0	27	7	20.59	-	-	-	A	35820503	G	A	35820503	3	1	964	1	0	0	0	0	1	0	0	0	9245	1261	44	4	192	4	MAGEB16	23	35820503	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09		35820503	119450057	56	76612										
TBC1D25	0	genome.wustl.edu	37	chrX	48399820	48399820	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	acatcctcatccgagcctttGatttgagtgggtgagtggga	13	8	1	3			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	X	48399820	48399820	G	C	SNP	TBC1D25	ENST00000376771	human	ensembl	69_37n	1	known	missense	c.223	p.D75H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	101	0	0	72	12	14.29	-	-	-	C	48399820	G	C	48399820	3	2	964	1	0	0	0	0	1	0	0	0	15707	1290	45	2	229	2	TBC1D25	23	48399820	Missense_Mutation	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	12579317	48399820	106870740	57	76613										
PCDH11X	0	genome.wustl.edu	37	chrX	91133194	91133194	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	tgaggatggtggtagagtatCacgttcttcaagtgccaaag	13	6	3	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	X	91133194	91133194	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	1	known	missense	c.1955	p.S652L	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	62	0	0	29	6	17.14	-	-	-	T	91133194	C	T	91133194	3	4	964	1	0	0	0	0	1	0	0	0	11581	838	29	2	1961	2	PCDH11X	23	91133194	Missense_Mutation	SNP	C	TCGA-OL-A5DA-01A-11D-A27P-09	42733374	91133194	64137366	58	76614										
ZCCHC18	0	genome.wustl.edu	37	chrX	103360247	103360247	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.457627118644068	27	7.95986183544383e-10	3.95475218658892	7.17714285714286	2.79111111111111	1	1	20	ctccatgtgtctatttctttGatgactttatactttttatg	5	7	2	2			TCGA-OL-A5DA-01A-11D-A27P-09	TCGA-OL-A5DA-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df98fc00-d39c-4d26-a90a-76543158ddca	036cd1a3-6f1d-4099-93c3-125e1b280698	X	103360247	103360247	G	C	SNP	ZCCHC18	ENST00000422784	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZCCHC18	HGNC	ENSG00000166707	49	0	0	19	6	24	-	-	-	C	103360247	G	C	103360247	1	2	964	0	1	0	0	0	0	0	0	0	17682	1305	45	2		2	ZCCHC18	23	103360247	RNA	SNP	G	TCGA-OL-A5DA-01A-11D-A27P-09	12227053	103360247	51910313	59	76615										
LCE1A	0	genome.wustl.edu	37	chr1	152800194	152800194	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	aggtcccaccgtcacagactCcagagctctggctgctgcag	11	15	2	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	1	152800194	152800194	C	T	SNP	LCE1A	ENST00000335123	human	ensembl	69_37n	1	known	silent	c.246	p.L82	0.043	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844	63	0	0	70	8	10.26	-	-	-	T	152800194	C	T	152800194	2	4	965	1	0	0	0	0	0	0	0	1	8713	842	30	2		2	LCE1A	1	152800194	Silent	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09		152800194	96450427	1	76616										
GLUL	0	genome.wustl.edu	37	chr1	182359762	182359762	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ccggagctttctgggagaggGcgatggagaaggggacagac	19	7	1	3			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	1	182359762	182359762	G	A	SNP	GLUL	ENST00000480604	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.335	-	-	-	no_errors	GLUL	HGNC	ENSG00000135821	79	0	0	91	17	15.74	-	-	-	A	182359762	G	A	182359762	1	1	965	0	1	0	0	0	0	0	0	0	6530	1218	42	4		4	GLUL	1	182359762	RNA	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	29559568	182359762	66890859	2	76617										
RYR2	0	genome.wustl.edu	37	chr1	237604745	237604745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ggcttacttaccagtctgtgGacgtgaaatccgtgagaatg	12	8	1	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	1	237604745	237604745	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.1126	p.D376N	1.000	pfam_MIR,superfamily_MIR,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	29	0	0	16	19	54.29	-	-	-	A	237604745	G	A	237604745	3	1	965	1	0	0	0	0	1	0	0	0	13855	1174	41	2	1182	2	RYR2	1	237604745	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	55244983	237604745	11645876	3	76618										
RYR2	0	genome.wustl.edu	37	chr1	237675055	237675055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	caagctgcctgaacaggagcGcaattacaacttacaaatgt	8	10	0	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	1	237675055	237675055	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.2780	p.R927H	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	58	0	0	68	8	10.53	-	-	-	A	237675055	G	A	237675055	3	1	965	1	0	0	0	0	1	0	0	0	13855	1087	38	1	2880	1	RYR2	1	237675055	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	70310	237675055	11575566	4	76619										
STAMBP	0	genome.wustl.edu	37	chr2	74074806	74074806	+	Frame_Shift_Del	DEL	C	C	-													0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	acagccttcagactgtcacaCaactgtaaggccagctaagc							TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	2	74074806	74074806	C	-	DEL	STAMBP	ENST00000339566	human	ensembl	69_37n	1	known	frame_shift_del	c.668	p.T223fs	0.846	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBP	HGNC	ENSG00000124356	42	0	0	23	7	23.33	-	-	-	-	74074806	C	-	74074806	7	5	965	1	0	1	0	1	0	0	0	0	15341	478	17	0	682	0	STAMBP	2	74074806	Frame_Shift_Del	DEL	C	TCGA-OL-A5RU-01A-11D-A28B-09		74074806	169124567	5	76620										
TRANK1	0	genome.wustl.edu	37	chr3	36872931	36872931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ccgctgtatggaggccttccGttgcttttgggaaagaatgg	14	8	0	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	3	36872931	36872931	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.8011	p.R2671W	0.981	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	45	0	0	32	10	23.81	-	-	-	A	36872931	G	A	36872931	3	1	965	1	0	0	0	0	1	0	0	0	16550	1144	40	1	778	1	TRANK1	3	36872931	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		36872931	161149499	6	76621										
G3BP2	0	genome.wustl.edu	37	chr4	76584088	76584088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ctactccaccatgaacatagGaagaattcctgccataaaac	5	12	0	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	4	76584088	76584088	G	A	SNP	G3BP2	ENST00000359707	human	ensembl	69_37n	-1	known	missense	c.116	p.S39F	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757	54	0	0	43	12	21.82	-	-	-	A	76584088	G	A	76584088	3	1	965	1	0	0	0	0	1	0	0	0	6191	1174	41	2	1372	2	G3BP2	4	76584088	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		76584088	114570188	7	76622										
ADH4	0	genome.wustl.edu	37	chr4	100057690	100057690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	gacaaactctctctaaatttGcatcatcatctattttggca	4	10	5	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	4	100057690	100057690	G	T	SNP	ADH4	ENST00000423445	human	ensembl	69_37n	-1	known	missense	c.566	p.A189E	0.994	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH4	HGNC	ENSG00000198099	56	0	0	49	14	22.22	-	-	-	T	100057690	G	T	100057690	3	4	965	1	0	0	0	0	1	0	0	0	310	1319	46	4	653	4	ADH4	4	100057690	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	23473602	100057690	91096586	8	76623										
TMEM14B	0	genome.wustl.edu	37	chr6	10756864	10756864	+	RNA	DEL	A	A	-													0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ttgcatctgacattttacctAaaaaaaaaaagacaccaaat							TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	6	10756864	10756864	A	-	DEL	TMEM14B	ENST00000486421	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	17	0	0	15	3	16.67	-	-	-	-	10756864	A	-	10756864	6	5	965	0	1	1	0	1	0	0	0	0	16159	377	13	0		0	TMEM14B	6	10756864	RNA	DEL	A	TCGA-OL-A5RU-01A-11D-A28B-09		10756864	160358203	9	76624										
DPCR1	0	genome.wustl.edu	37	chr6	30919390	30919390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	acacgaagaaatgaccccatCggccaatgagaacaccacac	7	14	0	3			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	6	30919390	30919390	C	T	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	1	novel	missense	c.3149	p.S1050L	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	63	0	0	44	7	13.73	-	-	-	T	30919390	C	T	30919390	3	4	965	1	0	0	0	0	1	0	0	0	4747	893	31	1	3155	1	DPCR1	6	30919390	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09	20162526	30919390	140195677	10	76625										
GRB10	0	genome.wustl.edu	37	chr7	50737517	50737517	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	aaaaggattggggatggccgGcagagatgaggttctaaact	15	5	1	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	7	50737517	50737517	G	C	SNP	GRB10	ENST00000398812	human	ensembl	69_37n	-1	known	missense	c.406	p.P136A	1.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070	47	0	0	30	8	21.05	-	-	-	C	50737517	G	C	50737517	3	2	965	1	0	0	0	0	1	0	0	0	6807	1203	42	4	1430	4	GRB10	7	50737517	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		50737517	108401146	11	76626										
ARPC1A	0	genome.wustl.edu	37	chr7	98931019	98931019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	tagagccaatcacctgtcatGcctggaacagggatcgtact	10	11	2	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	7	98931019	98931019	G	T	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	1	known	missense	c.43	p.A15S	1.000	superfamily_WD40_repeat_dom,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	54	0	0	46	11	19.3	-	-	-	T	98931019	G	T	98931019	3	4	965	1	0	0	0	0	1	0	0	0	973	1319	46	4	45	4	ARPC1A	7	98931019	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	48193502	98931019	60207644	12	76627										
ROR2	0	genome.wustl.edu	37	chr9	94487297	94487297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	tgctcccccggggcagggccGaacaggtgacctttgtagac	14	13	0	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	9	94487297	94487297	G	T	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	missense	c.1479	p.F493L	0.641	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	20	0	0	13	5	27.78	-	-	-	T	94487297	G	T	94487297	3	4	965	1	0	0	0	0	1	0	0	0	13613	1049	37	3	1356	3	ROR2	9	94487297	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		94487297	46726134	13	76628										
DCLRE1C	0	genome.wustl.edu	37	chr10	14968884	14968884	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	gaaaaacaagctctgtatgaActctctccagtcctaaaggg	8	10	2	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	10	14968884	14968884	A	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	silent	c.930	p.S310	1.000	pfam_DRMBL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	20	0	0	28	8	22.22	-	-	-	G	14968884	A	G	14968884	2	3	965	1	0	0	0	0	0	0	0	1	4327	40	2	5		5	DCLRE1C	10	14968884	Silent	SNP	A	TCGA-OL-A5RU-01A-11D-A28B-09		14968884	120565863	14	76629										
PIWIL1	0	genome.wustl.edu	37	chr12	130827204	130827204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ggagacagcgcagctggtggGctccactgccgtgagtgctt	16	11	0	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	12	130827204	130827204	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	1	known	missense	c.68	p.G23D	0.926	pfam_GAGE	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	60	0	0	36	7	16.28	-	-	-	A	130827204	G	A	130827204	3	1	965	1	0	0	0	0	1	0	0	0	12031	1203	42	4	70	4	PIWIL1	12	130827204	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		130827204	3024691	15	76630										
NYNRIN	0	genome.wustl.edu	37	chr14	24884665	24884665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ggacctttcctatgcctcccGgaccactgcggaccctgagg	11	16	0	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	14	24884665	24884665	G	A	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	1	known	missense	c.3710	p.R1237Q	0.046	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	94	0	0	35	29	45.31	-	-	-	A	24884665	G	A	24884665	3	1	965	1	0	0	0	0	1	0	0	0	10869	1116	39	1	3740	1	NYNRIN	14	24884665	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09		24884665	82464875	16	76631										
TCF12	0	genome.wustl.edu	37	chr15	57384057	57384057	+	Frame_Shift_Del	DEL	C	C	-													0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	aggagcccatgaaggcttgtCcccaacacctttcatgaact							TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	15	57384057	57384057	C	-	DEL	TCF12	ENST00000438423	human	ensembl	69_37n	1	known	frame_shift_del	c.293	p.P99fs	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF12	HGNC	ENSG00000140262	82	0	0	56	16	22.22	-	-	-	-	57384057	C	-	57384057	7	5	965	1	0	1	0	1	0	0	0	0	15782	855	30	0	307	0	TCF12	15	57384057	Frame_Shift_Del	DEL	C	TCGA-OL-A5RU-01A-11D-A28B-09		57384057	45147335	17	76632										
MRPL28	0	genome.wustl.edu	37	chr16	420169	420169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ggcgggaacagatgccctccCgcagctgcagccgcttccag	13	16	0	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	16	420169	420169	C	T	SNP	MRPL28	ENST00000199706	human	ensembl	69_37n	-1	known	missense	c.50	p.R17Q	0.110	NULL	NULL	-	no_errors	MRPL28	HGNC	ENSG00000086504	35	0	0	28	13	31.71	-	-	-	T	420169	C	T	420169	3	4	965	1	0	0	0	0	1	0	0	0	9864	652	23	1	740	1	MRPL28	16	420169	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09		420169	89934584	18	76633										
DCUN1D3	0	genome.wustl.edu	37	chr16	20873624	20873624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	gactcctcggcattggacttGgactccctcccagcatctcc	8	17	1	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	16	20873624	20873624	G	A	SNP	DCUN1D3	ENST00000324344	human	ensembl	69_37n	-1	known	silent	c.237	p.S79	0.948	NULL	pfam_PONY_dom	-	no_errors	DCUN1D3	HGNC	ENSG00000188215	57	0	0	56	14	20	-	-	-	A	20873624	G	A	20873624	2	1	965	1	0	0	0	0	0	0	0	1	4346	1335	47	4		4	DCUN1D3	16	20873624	Silent	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	20453455	20873624	69481129	19	76634										
MON1B	0	genome.wustl.edu	37	chr16	77228780	77228780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	ttttctacgcctacgtggccCgcctggatgctatgcctgtc	10	14	1	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	16	77228780	77228780	C	T	SNP	MON1B	ENST00000248248	human	ensembl	69_37n	1	known	missense	c.1024	p.R342C	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111	159	0	0	89	24	21.24	-	-	-	T	77228780	C	T	77228780	3	4	965	1	0	0	0	0	1	0	0	0	9771	652	23	1	1034	1	MON1B	16	77228780	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09	56355156	77228780	13125973	20	76635										
NLGN2	0	genome.wustl.edu	37	chr17	7317987	7317987	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	cttctctactcccaggttttCtcagcaccggggaccaggct	9	15	2	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	17	7317987	7317987	C	G	SNP	NLGN2	ENST00000302926	human	ensembl	69_37n	1	known	missense	c.664	p.L222V	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992	36	0	0	30	6	16.67	-	-	-	G	7317987	C	G	7317987	3	3	965	1	0	0	0	0	1	0	0	0	10534	913	32	2	678	2	NLGN2	17	7317987	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09		7317987	73877223	21	76636										
ANKFN1	0	genome.wustl.edu	37	chr17	54543866	54543866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	cagatctcaaagctgcaaagCcagagaaagtctctatcaac	7	11	3	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	17	54543866	54543866	C	A	SNP	ANKFN1	ENST00000318698	human	ensembl	69_37n	1	known	missense	c.1716	p.S572R	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	64	0	0	53	12	18.46	-	-	-	A	54543866	C	A	54543866	3	1	965	1	0	0	0	0	1	0	0	0	625	738	26	4	1770	4	ANKFN1	17	54543866	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09	47225879	54543866	26651344	22	76637										
BPTF	0	genome.wustl.edu	37	chr17	65914930	65914930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	atatggcggccaaggctcctCcaggaggagggactacacgg	15	11	0	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	17	65914930	65914930	C	T	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	1	known	missense	c.5782	p.P1928S	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	64	0	0	52	8	13.33	-	-	-	T	65914930	C	T	65914930	3	4	965	1	0	0	0	0	1	0	0	0	1503	855	30	2	5836	2	BPTF	17	65914930	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09	11371064	65914930	15280280	23	76638										
RASSF2	0	genome.wustl.edu	37	chr20	4764003	4764003	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	aggccaccaggccctggccaCactagctggtcagcactgtg	12	15	1	0			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	20	4764003	4764003	C	T	SNP	RASSF2	ENST00000474232	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RASSF2	HGNC	ENSG00000101265	8	0	0	4	4	50	-	-	-	T	4764003	C	T	4764003	1	4	965	0	1	0	0	0	0	0	0	0	13169	493	17	4		4	RASSF2	20	4764003	RNA	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09		4764003	58261517	24	76639										
TM9SF4	0	genome.wustl.edu	37	chr20	30733013	30733013	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	cctactctgtccactgggagGtgagaaggggctggagctca	15	10	2	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	20	30733013	30733013	G	A	SNP	TM9SF4	ENST00000398022	human	ensembl	69_37n	1	known	splice_site	c.771+1	e7+1	1.000	-	-	-	no_errors	TM9SF4	HGNC	ENSG00000101337	81	0	0	56	8	12.5	-	-	-	A	30733013	G	A	30733013	5	1	965	1	0	0	0	0	0	0	1	0	16075	1275	44	4	798	4	TM9SF4	20	30733013	Splice_Site	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	25969010	30733013	32292507	25	76640										
IQSEC2	0	genome.wustl.edu	37	chrX	53265540	53265540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	tcgcagggaactgctgagtgCgccccgtttgagcccatcgc	13	14	0	2			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	X	53265540	53265540	C	T	SNP	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	missense	c.3415	p.A1139T	1.000	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	92	0	0	56	20	26.32	-	-	-	T	53265540	C	T	53265540	3	4	965	1	0	0	0	0	1	0	0	0	7872	768	27	1	1063	1	IQSEC2	23	53265540	Missense_Mutation	SNP	C	TCGA-OL-A5RU-01A-11D-A28B-09		53265540	102005020	26	76641										
GPRASP2	0	genome.wustl.edu	37	chrX	101971061	101971061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.037037037037037	1	1	0.54093567251462	5.13888888888889	0	1	1	0	agggggccattggcggatccGcgtactgggctgaggaaaag	18	8	0	1			TCGA-OL-A5RU-01A-11D-A28B-09	TCGA-OL-A5RU-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71c2d95b-0f1d-4c32-ba5b-eb99b89b8b67	71f481a7-4ecb-462c-bab1-bdfea4575a56	X	101971061	101971061	G	A	SNP	GPRASP2	ENST00000332262	human	ensembl	69_37n	1	known	missense	c.1264	p.A422T	0.033	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	66	0	0	42	7	14.29	-	-	-	A	101971061	G	A	101971061	3	1	965	1	0	0	0	0	1	0	0	0	6774	1087	38	1	1266	1	GPRASP2	23	101971061	Missense_Mutation	SNP	G	TCGA-OL-A5RU-01A-11D-A28B-09	48705521	101971061	53299499	27	76642										
GAP43	0	genome.wustl.edu	37	chr3	115395232	115395232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctgcatcctcagaggagaagGccggctcagctgagacagaa	13	11	2	4			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	3	115395232	115395232	G	A	SNP	GAP43	ENST00000305124	human	ensembl	69_37n	1	known	missense	c.403	p.A135T	1.000	pfam_Neuromodulin_C	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Neuromodulin,pfscan_IQ_motif_EF-hand-BS	-	no_errors	GAP43	HGNC	ENSG00000172020	62	0	0	55	15	21.13	-	-	-	A	115395232	G	A	115395232	3	1	966	1	0	0	0	0	1	0	0	0	6285	1203	42	4	551	4	GAP43	3	115395232	Missense_Mutation	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09		115395232	82627198	1	76643										
GIMAP8	0	genome.wustl.edu	37	chr7	150174788	150174788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atccccatacacaggagaacGtcagcaaactaattaaaaat	5	10	1	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	7	150174788	150174788	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	1	known	missense	c.1918	p.V640I	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	52	0	0	13	3	18.75	-	-	-	A	150174788	G	A	150174788	3	1	966	1	0	0	0	0	1	0	0	0	6437	1145	40	1	1932	1	GIMAP8	7	150174788	Missense_Mutation	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09		150174788	8963875	2	76644										
PRKDC	0	genome.wustl.edu	37	chr8	48701485	48701485	+	Frame_Shift_Del	DEL	A	A	-													0	0	1	0	0	0	1	1	0	acctgaataaacttccttctAaaggcccccaggcctggagc							TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	8	48701485	48701485	A	-	DEL	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	frame_shift_del	c.10881	p.F3627fs	0.183	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	54	0	0	17	2	10.53	-	-	-	-	48701485	A	-	48701485	7	5	966	1	0	1	0	1	0	0	0	0	12602	359	13	0	1546	0	PRKDC	8	48701485	Frame_Shift_Del	DEL	A	TCGA-OL-A5RV-01A-12D-A28B-09		48701485	97662537	3	76645										
LINGO2	0	genome.wustl.edu	37	chr9	27950323	27950323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccaaagggaccagctttagaCgattgccttttaggcggagg	13	9	0	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	9	27950323	27950323	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.347	p.R116H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	39	0	0	26	6	18.75	-	-	-	T	27950323	C	T	27950323	3	4	966	1	0	0	0	0	1	0	0	0	8871	536	19	1	1477	1	LINGO2	9	27950323	Missense_Mutation	SNP	C	TCGA-OL-A5RV-01A-12D-A28B-09		27950323	113263108	4	76646										
CRAT	0	genome.wustl.edu	37	chr9	131871216	131871216	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaagagccaagattcagcgGgaggcaggtggcagtggcga	17	8	1	2			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	9	131871216	131871216	G	A	SNP	CRAT	ENST00000460708	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	CRAT	HGNC	ENSG00000095321	56	0	0	61	7	10.29	-	-	-	A	131871216	G	A	131871216	1	1	966	0	1	0	0	0	0	0	0	0	3877	1247	43	4		4	CRAT	9	131871216	RNA	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09	103920893	131871216	9342215	5	76647										
C9orf78	0	genome.wustl.edu	37	chr9	132590352	132590352	+	RNA	SNP	A	A	G													0	0	1	0	0	0	1	1	0	aaagtgctgggattacaggcAggagccaccacgcccggcca							TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	9	132590352	132590352	A	G	SNP	C9orf78	ENST00000461349	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	10	0	0	6	12	66.67	-	-	-	G	132590352	A	G	132590352	1	3	966	0	1	0	0	0	0	0	0	0	2521	203	7	5		5	C9orf78	9	132590352	RNA	SNP	A	TCGA-OL-A5RV-01A-12D-A28B-09	719136	132590352	8623079	6	76648	532	2								
C9orf78	0	genome.wustl.edu	37	chr9	132590353	132590353	+	RNA	SNP	G	G	T													0	0	1	0	0	0	1	1	0	aagtgctgggattacaggcaGgagccaccacgcccggccag							TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	9	132590353	132590353	G	T	SNP	C9orf78	ENST00000461349	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	10	0	0	6	12	66.67	-	-	-	T	132590353	G	T	132590353	1	4	966	0	1	0	0	0	0	0	0	0	2521	1015	35	4		4	C9orf78	9	132590353	RNA	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09	1	132590353	8623078	7	76649	532	2								
CCNY	0	genome.wustl.edu	37	chr10	35842095	35842095	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttactgccagatcctgaaagAcatcacggtggaggacatgt	11	9	1	3			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	10	35842095	35842095	A	C	SNP	CCNY	ENST00000374704	human	ensembl	69_37n	1	known	missense	c.728	p.D243A	1.000	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNY	HGNC	ENSG00000108100	65	0	0	39	9	18.75	-	-	-	C	35842095	A	C	35842095	3	2	966	1	0	0	0	0	1	0	0	0	2965	275	10	5	758	5	CCNY	10	35842095	Missense_Mutation	SNP	A	TCGA-OL-A5RV-01A-12D-A28B-09		35842095	99692652	8	76650										
MUC5B	0	genome.wustl.edu	37	chr11	1268037	1268037	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gctcacactaccaaagtgccGactaccacaaccacgggctt	7	16	1	0			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	11	1268037	1268037	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	1	known	silent	c.9936	p.P3312	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	36	0	0	34	5	12.82	-	-	-	A	1268037	G	A	1268037	2	1	966	1	0	0	0	0	0	0	0	1	10051	1045	37	1		1	MUC5B	11	1268037	Silent	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09		1268037	133738479	9	76651										
OR51B5	0	genome.wustl.edu	37	chr11	5364309	5364309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaacaacggatacaaatcccCtcatcagaactcccagccca	5	16	2	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	11	5364309	5364309	C	T	SNP	OR51B5	ENST00000300773	human	ensembl	69_37n	-1	known	missense	c.446	p.R149K	0.028	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180	25	0	0	12	3	20	-	-	-	T	5364309	C	T	5364309	3	4	966	1	0	0	0	0	1	0	0	0	11164	681	24	4	496	4	OR51B5	11	5364309	Missense_Mutation	SNP	C	TCGA-OL-A5RV-01A-12D-A28B-09	4096272	5364309	129642207	10	76652										
FMN1	0	genome.wustl.edu	37	chr15	33445437	33445437	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agacgcacccagagaagacaCggctctttctacaaggagag	11	11	2	4			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	15	33445437	33445437	C	G	SNP	FMN1	ENST00000320930	human	ensembl	69_37n	-1	known	missense	c.1679	p.R560P	0.001	NULL	NULL	-	no_errors	FMN1	HGNC	ENSG00000248905	61	0	0	31	11	26.19	-	-	-	G	33445437	C	G	33445437	3	3	966	1	0	0	0	0	1	0	0	0	5995	551	19	3		3	FMN1	15	33445437	Missense_Mutation	SNP	C	TCGA-OL-A5RV-01A-12D-A28B-09		33445437	69085955	11	76653										
CDH1	0	genome.wustl.edu	37	chr16	68849631	68849631	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcacatcctacactgcccagGagccagacacatttatggaa	7	13	1	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	16	68849631	68849631	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1534	p.E512*	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	92	0	0	51	7	12.07	-	-	-	T	68849631	G	T	68849631	4	4	966	1	0	0	0	0	0	1	0	0	3124	1175	41	2	1572	2	CDH1	16	68849631	Nonsense_Mutation	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09		68849631	21505122	12	76654										
ZNF507	0	genome.wustl.edu	37	chr19	32838287	32838287	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgtttccttatttataagActgtataacacccacctagc	5	10	0	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	19	32838287	32838287	A	C	SNP	ZNF507	ENST00000588686	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF507	HGNC	ENSG00000168813	10	0	0	1	8	88.89	-	-	-	C	32838287	A	C	32838287	1	2	966	0	1	0	0	0	0	0	0	0	18049	290	10	5		5	ZNF507	19	32838287	RNA	SNP	A	TCGA-OL-A5RV-01A-12D-A28B-09		32838287	26290696	13	76655										
NLRP7	0	genome.wustl.edu	37	chr19	55451644	55451644	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gccagcgtggttttccccacGcctgcggggccgtgcagcac	14	16	0	0			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	19	55451644	55451644	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	69_37n	-1	known	silent	c.627	p.G209	0.153	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634	105	0	0	63	21	25	-	-	-	A	55451644	G	A	55451644	2	1	966	1	0	0	0	0	0	0	0	1	10554	1074	38	1		1	NLRP7	19	55451644	Silent	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09	22613357	55451644	3677339	14	76656										
RUNX1	0	genome.wustl.edu	37	chr21	36252998	36252998	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agtgccatctggaacatcccCtagggccaccacctaaacac	7	16	1	0			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	21	36252998	36252998	C	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.364	p.G122R	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	50	0	0	34	6	15	-	-	-	G	36252998	C	G	36252998	3	3	966	1	0	0	0	0	1	0	0	0	13832	681	24	4	1131	4	RUNX1	21	36252998	Missense_Mutation	SNP	C	TCGA-OL-A5RV-01A-12D-A28B-09		36252998	11876897	15	76657										
TCN2	0	genome.wustl.edu	37	chr22	31008889	31008889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagcgaggatgacggtgactGccagggcaagccttccatgg	15	11	0	2			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	22	31008889	31008889	G	A	SNP	TCN2	ENST00000215838	human	ensembl	69_37n	1	known	missense	c.287	p.C96Y	0.003	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	TCN2	HGNC	ENSG00000185339	30	0	0	30	5	14.29	-	-	-	A	31008889	G	A	31008889	3	1	966	1	0	0	0	0	1	0	0	0	15802	1319	46	4	297	4	TCN2	22	31008889	Missense_Mutation	SNP	G	TCGA-OL-A5RV-01A-12D-A28B-09		31008889	20295677	16	76658										
ZNF81	0	genome.wustl.edu	37	chrX	47775907	47775907	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgtgggaaagccttcactgAtaggtcaaatttcaataaac	8	7	3	1			TCGA-OL-A5RV-01A-12D-A28B-09	TCGA-OL-A5RV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c44645c5-d31b-43ae-9786-7fc7742d0619	c9a00734-ddab-4cdc-9fa2-614e08118842	X	47775907	47775907	A	T	SNP	ZNF81	ENST00000338637	human	ensembl	69_37n	1	known	missense	c.1862	p.D621V	0.011	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779	75	0	0	28	16	36.36	-	-	-	T	47775907	A	T	47775907	3	4	966	1	0	0	0	0	1	0	0	0	18267	333	12	5	1876	5	ZNF81	23	47775907	Missense_Mutation	SNP	A	TCGA-OL-A5RV-01A-12D-A28B-09		47775907	107494653	17	76659										
CSMD2	0	genome.wustl.edu	37	chr1	34128546	34128546	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agaagtcagtgctgaactgcAggacgaccgagttgaaggtg	15	7	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	34128546	34128546	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	missense	c.4199	p.L1400P	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	24	0	0	37	23	38.33	-	-	-	G	34128546	A	G	34128546	3	3	967	1	0	0	0	0	1	0	0	0	3977	188	7	5	6560	5	CSMD2	1	34128546	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09		34128546	215122075	1	76660										
SORT1	0	genome.wustl.edu	37	chr1	109865579	109865579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aaagtcctccagggaacagaGgcagatggagggctgcttgg	16	8	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	109865579	109865579	G	A	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	missense	c.1999	p.L667F	0.547	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	52	0	0	53	31	36.9	-	-	-	A	109865579	G	A	109865579	3	1	967	1	0	0	0	0	1	0	0	0	15024	1000	35	4	520	4	SORT1	1	109865579	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	75737033	109865579	139385042	2	76661										
DENND2C	0	genome.wustl.edu	37	chr1	115127989	115127989	+	RNA	DEL	A	A	-													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cacatagaaaaggctgctatAaaaaaaaaatggagacagag							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	115127989	115127989	A	-	DEL	DENND2C	ENST00000495031	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DENND2C	HGNC	ENSG00000175984	20	0	0	11	2	15.38	-	-	-	-	115127989	A	-	115127989	6	5	967	0	1	1	0	1	0	0	0	0	4466	377	13	0		0	DENND2C	1	115127989	RNA	DEL	A	TCGA-OL-A5RW-01A-11D-A28B-09	5262410	115127989	134122632	3	76662										
TDRKH	0	genome.wustl.edu	37	chr1	151747603	151747603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtcttcaggaagctcaattgCgtatcctttgtgtactaatt	8	8	3	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	151747603	151747603	C	T	SNP	TDRKH	ENST00000368822	human	ensembl	69_37n	-1	known	missense	c.1474	p.A492T	0.999	NULL	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134	56	0	0	88	31	26.05	-	-	-	T	151747603	C	T	151747603	3	4	967	1	0	0	0	0	1	0	0	0	15832	768	27	1	223	1	TDRKH	1	151747603	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	36619614	151747603	97503018	4	76663										
HRNR	0	genome.wustl.edu	37	chr1	152188940	152188940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cgtggctggaggagtgccccAaaccggacccatgtcggccg	15	14	0	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	152188940	152188940	A	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5165	p.L1722S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	18	0	0	57	13	18.57	-	-	-	G	152188940	A	G	152188940	3	3	967	1	0	0	0	0	1	0	0	0	7410	131	5	5	3391	5	HRNR	1	152188940	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	441337	152188940	97061681	5	76664										
GON4L	0	genome.wustl.edu	37	chr1	155785925	155785925	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	caaagattgatcaagaaaagTtaaagaggaagtacttaagt	9	3	1	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	155785925	155785925	T	A	SNP	GON4L	ENST00000471341	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	39	0	0	89	15	14.42	-	-	-	A	155785925	T	A	155785925	1	1	967	0	1	0	0	0	0	0	0	0	6621	1740	60	5		5	GON4L	1	155785925	RNA	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	3596985	155785925	93464696	6	76665										
SELL	0	genome.wustl.edu	37	chr1	169677698	169677698	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	caccatctccccagttctctGcttcttcagtaagagatttg	6	13	4	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	169677698	169677698	G	C	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.371	p.A124G	1.000	pirsf_L-selectin,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	77	0	0	56	112	66.67	-	-	-	C	169677698	G	C	169677698	3	2	967	1	0	0	0	0	1	0	0	0	14104	1319	46	4	814	4	SELL	1	169677698	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	13891773	169677698	79572923	7	76666										
CDK18	0	genome.wustl.edu	37	chr1	205497037	205497037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gaggggggagctgaagctggCcgactttggtgaggctgggg	22	6	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	205497037	205497037	C	T	SNP	CDK18	ENST00000506784	human	ensembl	69_37n	1	known	missense	c.935	p.A312V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK18	HGNC	ENSG00000117266	41	0	0	47	36	43.37	-	-	-	T	205497037	C	T	205497037	3	4	967	1	0	0	0	0	1	0	0	0	3163	739	26	4	965	4	CDK18	1	205497037	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	35819339	205497037	43753584	8	76667										
EPRS	0	genome.wustl.edu	37	chr1	220152942	220152942	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggaaaaattctgccctaaatGatgtgatgttcctccctaaa	7	9	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	220152942	220152942	G	C	SNP	EPRS	ENST00000366923	human	ensembl	69_37n	-1	known	missense	c.3727	p.H1243D	1.000	pfscan_aa-tRNA-synth_II,tigrfam_Pro-tRNA-synth_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_synth_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_synth_II_C,prints_Glu/Gln-tRNA-synth_Ib,prints_Pro-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-synth_IIa_arc-type,tigrfam_Glu-tRNA-synth_Ib_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	19	0	0	25	14	35.9	-	-	-	C	220152942	G	C	220152942	3	2	967	1	0	0	0	0	1	0	0	0	5228	1290	45	2	835	2	EPRS	1	220152942	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	14655905	220152942	29097679	9	76668										
MIA3	0	genome.wustl.edu	37	chr1	222794527	222794527	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgtaccgcggtgaggctcttGaagatttcacaggcccggat	13	10	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	222794527	222794527	G	C	SNP	MIA3	ENST00000344441	human	ensembl	69_37n	1	known	missense	c.160	p.E54Q	0.001	pfam_SH3_2,superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	82	0	0	96	12	11.11	-	-	-	C	222794527	G	C	222794527	3	2	967	1	0	0	0	0	1	0	0	0	9636	1291	45	2	166	2	MIA3	1	222794527	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	2641585	222794527	26456094	10	76669										
OBSCN	0	genome.wustl.edu	37	chr1	228462358	228462358	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	accttccagtgcgtggtgtcCcccagtgatgtggcagtcgt	13	12	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	228462358	228462358	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	1	known	silent	c.5769	p.S1923	0.993	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	97	0	0	134	96	41.74	-	-	-	T	228462358	C	T	228462358	2	4	967	1	0	0	0	0	0	0	0	1	10885	610	22	4		4	OBSCN	1	228462358	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	5667831	228462358	20788263	11	76670										
TRIM11	0	genome.wustl.edu	37	chr1	228584876	228584876	+	RNA	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tccttgatgtcctatgtgggGaggagaaacagcacactcgg	13	9	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	228584876	228584876	G	C	SNP	TRIM11	ENST00000475775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM11	HGNC	ENSG00000154370	86	0	0	149	17	10.24	-	-	-	C	228584876	G	C	228584876	1	2	967	0	1	0	0	0	0	0	0	0	16583	1189	41	2		2	TRIM11	1	228584876	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	122518	228584876	20665745	12	76671										
RYR2	0	genome.wustl.edu	37	chr1	237949315	237949315	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggaagaaaaagaagaaaccaAatctgaacctgaaaaagccg	9	7	1	5			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	1	237949315	237949315	A	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	1	known	missense	c.13325	p.K4442I	0.991	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	61	0	0	74	35	32.11	-	-	-	T	237949315	A	T	237949315	3	4	967	1	0	0	0	0	1	0	0	0	13855	14	1	5	13669	5	RYR2	1	237949315	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	9364439	237949315	11301306	13	76672										
ASAP2	0	genome.wustl.edu	37	chr2	9520932	9520932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcaagcacgagcactgtgagGagctggtgagtctcccacca	12	12	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	9520932	9520932	G	A	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	1	known	missense	c.2011	p.E671K	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	35	0	0	25	19	43.18	-	-	-	A	9520932	G	A	9520932	3	1	967	1	0	0	0	0	1	0	0	0	1015	1175	41	2	2089	2	ASAP2	2	9520932	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		9520932	233678441	14	76673										
NRXN1	0	genome.wustl.edu	37	chr2	50246399	50246399	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tttcttatttgggttttggcCtgttctccataagtttgaaa	8	6	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	50246399	50246399	C	A	SNP	NRXN1	ENST00000378262	human	ensembl	69_37n	-1	novel	missense	c.13	p.G5C	0.000	NULL	smart_Neurexin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NRXN1	HGNC	ENSG00000179915	163	0	0	151	106	41.25	-	-	-	A	50246399	C	A	50246399	3	1	967	1	0	0	0	0	1	0	0	0	10738	696	24	4		4	NRXN1	2	50246399	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	40725467	50246399	192952974	15	76674										
VAMP5	0	genome.wustl.edu	37	chr2	85818859	85818859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggtgtccaggcaggaatagaGttggagcggtgccagcagca	17	8	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	85818859	85818859	G	T	SNP	VAMP5	ENST00000306384	human	ensembl	69_37n	1	known	missense	c.15	p.E5D	0.998	pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP5	HGNC	ENSG00000168899	46	0	0	46	29	38.67	-	-	-	T	85818859	G	T	85818859	3	4	967	1	0	0	0	0	1	0	0	0	17213	1020	36	4	21	4	VAMP5	2	85818859	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	35572460	85818859	157380514	16	76675										
ST3GAL5	0	genome.wustl.edu	37	chr2	86067514	86067514	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgacaccgattgtggggacgTtctgagaaagggaaaagaag	15	5	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	86067514	86067514	T	C	SNP	ST3GAL5	ENST00000377332	human	ensembl	69_37n	-1	known	missense	c.1010	p.N337S	0.998	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525	19	0	0	24	20	45.45	-	-	-	C	86067514	T	C	86067514	3	2	967	1	0	0	0	0	1	0	0	0	15309	1739	60	5	250	5	ST3GAL5	2	86067514	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	248655	86067514	157131859	17	76676										
MGAT4A	0	genome.wustl.edu	37	chr2	99274686	99274686	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttaagaagaacttactctttCtccaggttggctacaacacc	6	11	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	99274686	99274686	C	T	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	silent	c.579	p.E193	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	80	0	0	69	26	27.37	-	-	-	T	99274686	C	T	99274686	2	4	967	1	0	0	0	0	0	0	0	1	9616	912	32	2		2	MGAT4A	2	99274686	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	13207172	99274686	143924687	18	76677										
AFF3	0	genome.wustl.edu	37	chr2	100623429	100623429	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cacttgtttggcccgaggctGctgtctgccaacaccatctc	9	15	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	100623429	100623429	G	C	SNP	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	missense	c.613	p.Q205E	0.994	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	24	0	0	31	5	13.89	-	-	-	C	100623429	G	C	100623429	3	2	967	1	0	0	0	0	1	0	0	0	358	1328	46	4	3218	4	AFF3	2	100623429	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1348743	100623429	142575944	19	76678										
MAP4K4	0	genome.wustl.edu	37	chr2	102490547	102490547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aatatattgtgtttcagtggGattttcctgtgatgggatga	12	3	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	102490547	102490547	G	C	SNP	MAP4K4	ENST00000324219	human	ensembl	69_37n	1	known	missense	c.2882	p.G961A	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	40	0	0	31	18	36.73	-	-	-	C	102490547	G	C	102490547	3	2	967	1	0	0	0	0	1	0	0	0	9333	1174	41	2	2980	2	MAP4K4	2	102490547	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1867118	102490547	140708826	20	76679										
ZC3H15	0	genome.wustl.edu	37	chr2	187366134	187366134	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtgtttacattgatgcaagaGatgaagaacttgaaaaaggt	11	3	0	5			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	187366134	187366134	G	C	SNP	ZC3H15	ENST00000337859	human	ensembl	69_37n	1	known	missense	c.424	p.D142H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	30	0	0	37	17	31.48	-	-	-	C	187366134	G	C	187366134	3	2	967	1	0	0	0	0	1	0	0	0	17663	942	33	2	438	2	ZC3H15	2	187366134	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	84875587	187366134	55833239	21	76680										
COL3A1	0	genome.wustl.edu	37	chr2	189873946	189873946	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgccatcctgaactcaagagTggtatgtttggtagtctttc	10	8	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	189873946	189873946	T	A	SNP	COL3A1	ENST00000304636	human	ensembl	69_37n	1	known	missense	c.3822	p.S1274R	0.998	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	55	0	0	53	31	36.9	-	-	-	A	189873946	T	A	189873946	3	1	967	1	0	0	0	0	1	0	0	0	3718	1710	59	5	4012	5	COL3A1	2	189873946	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	2507812	189873946	53325427	22	76681										
ANKAR	0	genome.wustl.edu	37	chr2	190585369	190585369	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gaatcccaagcctgataaatCtattgaacttaaacatagaa	5	8	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	190585369	190585369	C	G	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	1	known	missense	c.2491	p.L831V	0.992	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	29	0	0	52	7	11.86	-	-	-	G	190585369	C	G	190585369	3	3	967	1	0	0	0	0	1	0	0	0	623	912	32	2	2533	2	ANKAR	2	190585369	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	711423	190585369	52614004	23	76682										
FAM117B	0	genome.wustl.edu	37	chr2	203589688	203589688	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctgaaaagaagaaagggtctCacaagcgctcagcatcttgg	11	9	3	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	203589688	203589688	C	G	SNP	FAM117B	ENST00000392238	human	ensembl	69_37n	1	known	missense	c.802	p.H268D	1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	73	0	0	95	15	13.64	-	-	-	G	203589688	C	G	203589688	3	3	967	1	0	0	0	0	1	0	0	0	5450	826	29	2	812	2	FAM117B	2	203589688	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	13004319	203589688	39609685	24	76683										
WDR12	0	genome.wustl.edu	37	chr2	203747488	203747488	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcttcatgagcagccagatcAtagagaggagccttacaact	9	10	3	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	203747488	203747488	A	T	SNP	WDR12	ENST00000261015	human	ensembl	69_37n	-1	known	nonsense	c.1140	p.Y380*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR12	HGNC	ENSG00000138442	22	0	0	28	23	45.1	-	-	-	T	203747488	A	T	203747488	4	4	967	1	0	0	0	0	0	1	0	0	17371	224	8	5	139	5	WDR12	2	203747488	Nonsense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	157800	203747488	39451885	25	76684										
VWC2L	0	genome.wustl.edu	37	chr2	215278990	215278990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tggtcacctctgctgctatcAgtcatgaagactatcctgct	8	12	4	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	2	215278990	215278990	A	G	SNP	VWC2L	ENST00000312504	human	ensembl	69_37n	1	known	missense	c.73	p.S25G	1.000	NULL	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453	63	0	0	82	56	40.58	-	-	-	G	215278990	A	G	215278990	3	3	967	1	0	0	0	0	1	0	0	0	17341	188	7	5	75	5	VWC2L	2	215278990	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	11531502	215278990	27920383	26	76685										
IL17RE	0	genome.wustl.edu	37	chr3	9948736	9948736	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtcagcgtgcgtctttgtcaCcagtgggcactggagtgtga	15	9	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	9948736	9948736	C	G	SNP	IL17RE	ENST00000421412	human	ensembl	69_37n	1	known	missense	c.717	p.H239Q	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701	46	0	0	26	70	72.92	-	-	-	G	9948736	C	G	9948736	3	3	967	1	0	0	0	0	1	0	0	0	7697	506	18	4	640	4	IL17RE	3	9948736	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		9948736	188073694	27	76686										
RAF1	0	genome.wustl.edu	37	chr3	12641238	12641238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aaaagagcctgacccaatccGagtggacagcatcacttcac	8	13	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	12641238	12641238	G	A	SNP	RAF1	ENST00000442415	human	ensembl	69_37n	-1	known	missense	c.1120	p.R374W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155	34	0	0	4	38	90.48	-	-	-	A	12641238	G	A	12641238	3	1	967	1	0	0	0	0	1	0	0	0	13085	1057	37	1	918	1	RAF1	3	12641238	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	2692502	12641238	185381192	28	76687										
DAZL	0	genome.wustl.edu	37	chr3	16635178	16635178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttgccttttgtgggccatttCcagagggtggagtagcttca	13	8	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	16635178	16635178	C	T	SNP	DAZL	ENST00000399444	human	ensembl	69_37n	-1	known	missense	c.719	p.G240E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZL	HGNC	ENSG00000092345	169	0	0	29	99	77.34	-	-	-	T	16635178	C	T	16635178	3	4	967	1	0	0	0	0	1	0	0	0	4278	855	30	2	180	2	DAZL	3	16635178	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	3993940	16635178	181387252	29	76688										
VILL	0	genome.wustl.edu	37	chr3	38039609	38039609	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agaagggcaaagacctggtgGtcctggagttggcgaccccc	15	11	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	38039609	38039609	G	T	SNP	VILL	ENST00000283713	human	ensembl	69_37n	1	known	missense	c.793	p.V265F	1.000	smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059	27	0	0	7	49	87.5	-	-	-	T	38039609	G	T	38039609	3	4	967	1	0	0	0	0	1	0	0	0	17262	1261	44	4	819	4	VILL	3	38039609	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	21404431	38039609	159982821	30	76689										
CTNNB1	0	genome.wustl.edu	37	chr3	41268809	41268809	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtgctgaaggtgctatctgtCtgctctagtaataagccggc	12	9	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	41268809	41268809	C	T	SNP	CTNNB1	ENST00000349496	human	ensembl	69_37n	1	known	silent	c.1047	p.V349	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	CTNNB1	HGNC	ENSG00000168036	69	0	0	22	43	66.15	-	-	-	T	41268809	C	T	41268809	2	4	967	1	0	0	0	0	0	0	0	1	4048	900	32	2		2	CTNNB1	3	41268809	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	3229200	41268809	156753621	31	76690										
CCDC12	0	genome.wustl.edu	37	chr3	46982546	46982546	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cttggtctttggctccccatCttccttgtcctgcaaagaaa	7	13	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	46982546	46982546	C	G	SNP	CCDC12	ENST00000292314	human	ensembl	69_37n	-1	known	missense	c.145	p.D49H	1.000	pfam_mRNA_splic_Cwf18	pfam_mRNA_splic_Cwf18	-	no_errors	CCDC12	HGNC	ENSG00000160799	42	0	0	7	41	85.42	-	-	-	G	46982546	C	G	46982546	3	3	967	1	0	0	0	0	1	0	0	0	2780	913	32	2	418	2	CCDC12	3	46982546	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	5713737	46982546	151039884	32	76691										
DNAH1	0	genome.wustl.edu	37	chr3	52418012	52418012	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgttcctcaatgagatcccaGaactggaatcctcccaggaa	8	12	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	52418012	52418012	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	1	known	missense	c.8287	p.E2763K	0.990	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	34	0	0	36	7	16.28	-	-	-	A	52418012	G	A	52418012	3	1	967	1	0	0	0	0	1	0	0	0	4633	943	33	2	8489	2	DNAH1	3	52418012	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	5435466	52418012	145604418	33	76692										
CBLB	0	genome.wustl.edu	37	chr3	105421267	105421267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gggaggaggtggtgctgggaGtggtttatcttgttttctca	17	4	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	105421267	105421267	G	C	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.1630	p.L544V	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	47	0	0	71	31	30.39	-	-	-	C	105421267	G	C	105421267	3	2	967	1	0	0	0	0	1	0	0	0	2726	1029	36	4	1350	4	CBLB	3	105421267	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	53003255	105421267	92601163	34	76693										
KIAA2018	0	genome.wustl.edu	37	chr3	113374644	113374644	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacgtacagcagggccttgaTcgccatttccatgagacaca	10	12	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	113374644	113374644	T	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.5885	p.D1962A	0.998	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	31	0	0	52	27	34.18	-	-	-	G	113374644	T	G	113374644	3	3	967	1	0	0	0	0	1	0	0	0	8320	1435	50	5	856	5	KIAA2018	3	113374644	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	7953377	113374644	84647786	35	76694										
ADPRH	0	genome.wustl.edu	37	chr3	119306705	119306705	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	attctctcgggtcaaaagaaGacactgtaatttccctttag	7	9	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	119306705	119306705	G	C	SNP	ADPRH	ENST00000357003	human	ensembl	69_37n	1	known	missense	c.1054	p.D352H	0.790	pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843	21	0	0	22	8	26.67	-	-	-	C	119306705	G	C	119306705	3	2	967	1	0	0	0	0	1	0	0	0	331	942	33	2	1064	2	ADPRH	3	119306705	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	5932061	119306705	78715725	36	76695										
GOLGB1	0	genome.wustl.edu	37	chr3	121415907	121415907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttcactactacctgtacaagGtggacttatcaccactgttt	6	11	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	121415907	121415907	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.3448	p.P1150S	0.028	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	72	0	0	169	65	27.78	-	-	-	A	121415907	G	A	121415907	3	1	967	1	0	0	0	0	1	0	0	0	6614	1261	44	4	6371	4	GOLGB1	3	121415907	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	2109202	121415907	76606523	37	76696										
COL6A6	0	genome.wustl.edu	37	chr3	130290047	130290047	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcccatgatgctgataaactCaatgccacggcaaaggcctt	8	12	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	130290047	130290047	C	G	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	1	known	silent	c.2787	p.L929	0.853	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	22	0	0	20	22	52.38	-	-	-	G	130290047	C	G	130290047	2	3	967	1	0	0	0	0	0	0	0	1	3733	813	29	2		2	COL6A6	3	130290047	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	8874140	130290047	67732383	38	76697										
EPHB1	0	genome.wustl.edu	37	chr3	134670251	134670251	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tacgatgaaaacctgaacacCatccgcacctaccaggtgtg	8	13	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	134670251	134670251	C	G	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	1	known	silent	c.162	p.T54	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	36	0	0	70	29	29.29	-	-	-	G	134670251	C	G	134670251	2	3	967	1	0	0	0	0	0	0	0	1	5211	581	21	4		4	EPHB1	3	134670251	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	4380204	134670251	63352179	39	76698										
TSC22D2	0	genome.wustl.edu	37	chr3	150176290	150176290	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgcactgttaaaatctctttCaagcaatgatcaattatccc	4	10	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	150176290	150176290	C	G	SNP	TSC22D2	ENST00000361875	human	ensembl	69_37n	1	known	nonsense	c.2210	p.S737*	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428	33	0	0	81	13	13.83	-	-	-	G	150176290	C	G	150176290	4	3	967	1	0	0	0	0	0	1	0	0	16704	838	29	2	2224	2	TSC22D2	3	150176290	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	15506039	150176290	47846140	40	76699										
AADAC	0	genome.wustl.edu	37	chr3	151545910	151545910	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	catttctgggacttaaaattAgtcacagacttataaatcag	6	7	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	151545910	151545910	A	T	SNP	AADAC	ENST00000232892	human	ensembl	69_37n	1	known	missense	c.1150	p.S384C	0.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771	19	0	0	31	19	37.25	-	-	-	T	151545910	A	T	151545910	3	4	967	1	0	0	0	0	1	0	0	0	10	420	15	5	1168	5	AADAC	3	151545910	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	1369620	151545910	46476520	41	76700										
ZNF639	0	genome.wustl.edu	37	chr3	179051646	179051646	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gaacagtgtgatgtacagttCtcctcaagcagtgaactcta	9	9	3	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	179051646	179051646	C	G	SNP	ZNF639	ENST00000326361	human	ensembl	69_37n	1	known	missense	c.894	p.F298L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864	59	0	0	165	26	13.61	-	-	-	G	179051646	C	G	179051646	3	3	967	1	0	0	0	0	1	0	0	0	18152	912	32	2	908	2	ZNF639	3	179051646	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	27505736	179051646	18970784	42	76701										
DLG1	0	genome.wustl.edu	37	chr3	196812529	196812529	+	Frame_Shift_Del	DEL	T	T	-													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tggcttgccaccattcatcaTcagaagcattaataacatgg							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	3	196812529	196812529	T	-	DEL	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	frame_shift_del	c.1859	p.D620fs	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pirsf_M-assoc_guanylate_kinase,pfscan_SH3_domain	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	33	0	0	111	24	17.65	-	-	-	-	196812529	T	-	196812529	7	5	967	1	0	1	0	1	0	0	0	0	4590	1435	50	0	999	0	DLG1	3	196812529	Frame_Shift_Del	DEL	T	TCGA-OL-A5RW-01A-11D-A28B-09	17760883	196812529	1209901	43	76702										
ADD1	0	genome.wustl.edu	37	chr4	2930167	2930167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	accctggcagcgatgggtctCcaggcaagtccccgtccaaa	11	15	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	4	2930167	2930167	C	T	SNP	ADD1	ENST00000264758	human	ensembl	69_37n	1	known	missense	c.2224	p.P742S	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	27	0	0	45	9	16.67	-	-	-	T	2930167	C	T	2930167	3	4	967	1	0	0	0	0	1	0	0	0	304	855	30	2	2316	2	ADD1	4	2930167	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		2930167	188224109	44	76703										
ACOX3	0	genome.wustl.edu	37	chr4	8417577	8417577	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcggggaccttcagagggctCttgaacatgtcttcgacact	12	11	3	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	4	8417577	8417577	C	G	SNP	ACOX3	ENST00000356406	human	ensembl	69_37n	-1	known	missense	c.294	p.K98N	0.001	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008	39	0	0	38	10	20.83	-	-	-	G	8417577	C	G	8417577	3	3	967	1	0	0	0	0	1	0	0	0	160	912	32	2	1872	2	ACOX3	4	8417577	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	5487410	8417577	182736699	45	76704										
MAML3	0	genome.wustl.edu	37	chr4	140811075	140811075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gagtgctgttgctgctgctgCtgctgctgctgctgctgctg	15	11	0	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	4	140811075	140811075	C	T	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.1515	p.Q505	0.993	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	25	0	0	41	13	24.07	-	-	-	T	140811075	C	T	140811075	2	4	967	1	0	0	0	0	0	0	0	1	9278	812	28	4		4	MAML3	4	140811075	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	132393498	140811075	50343201	46	76705										
TTC29	0	genome.wustl.edu	37	chr4	147788723	147788723	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aagaggcttccgcttccatcTttttgtcacttcctgaagtg	8	11	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	4	147788723	147788723	T	A	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	missense	c.890	p.K297M	0.929	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	24	0	0	3	8	72.73	-	-	-	A	147788723	T	A	147788723	3	1	967	1	0	0	0	0	1	0	0	0	16793	1609	56	5	639	5	TTC29	4	147788723	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	6977648	147788723	43365553	47	76706										
DCHS2	0	genome.wustl.edu	37	chr4	155156012	155156012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttctcttttggaatgccaggCatatgcaaatgttcatcctt	7	9	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	4	155156012	155156012	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.8427	p.M2809I	0.000	NULL	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	34	0	0	15	13	46.43	-	-	-	T	155156012	C	T	155156012	3	4	967	1	0	0	0	0	1	0	0	0	4319	710	25	4	327	4	DCHS2	4	155156012	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	7367289	155156012	35998264	48	76707										
C5orf15	0	genome.wustl.edu	37	chr5	133295520	133295520	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	atcagcttcctcttgagacaGaggagtaggcgagggatgag	15	7	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	133295520	133295520	G	C	SNP	C5orf15	ENST00000231512	human	ensembl	69_37n	-1	known	missense	c.331	p.L111V	0.000	NULL	NULL	-	no_errors	C5orf15	HGNC	ENSG00000113583	36	0	0	32	39	54.17	-	-	-	C	133295520	G	C	133295520	3	2	967	1	0	0	0	0	1	0	0	0	2304	933	33	2	474	2	C5orf15	5	133295520	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		133295520	47619740	49	76708										
PFDN1	0	genome.wustl.edu	37	chr5	139680102	139680102	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gttctgtttagctgttcaatCtgtatgtctgcgagcttcac	9	9	5	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	139680102	139680102	C	T	SNP	PFDN1	ENST00000261813	human	ensembl	69_37n	-1	known	silent	c.99	p.Q33	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN1	HGNC	ENSG00000113068	74	0	0	100	45	31.03	-	-	-	T	139680102	C	T	139680102	2	4	967	1	0	0	0	0	0	0	0	1	11829	912	32	2		2	PFDN1	5	139680102	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6384582	139680102	41235158	50	76709										
HBEGF	0	genome.wustl.edu	37	chr5	139722294	139722294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aagtccttgtatttccgaagAcatgggtccctcttcttccc	7	13	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	139722294	139722294	A	G	SNP	HBEGF	ENST00000230990	human	ensembl	69_37n	-1	known	silent	c.324	p.C108	1.000	pfscan_EG-like_dom	pfscan_EG-like_dom	-	no_errors	HBEGF	HGNC	ENSG00000113070	78	0	0	97	42	30.22	-	-	-	G	139722294	A	G	139722294	2	3	967	1	0	0	0	0	0	0	0	1	7032	273	10	5		5	HBEGF	5	139722294	Silent	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	42192	139722294	41192966	51	76710										
PCDHB7	0	genome.wustl.edu	37	chr5	140552633	140552633	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttgtttcagaccagaacatgCaaattttactgctcagttcg	7	9	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	140552633	140552633	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	1	known	nonsense	c.217	p.Q73*	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	27	0	0	20	5	20	-	-	-	T	140552633	C	T	140552633	4	4	967	1	0	0	0	0	0	1	0	0	11620	711	25	4	219	4	PCDHB7	5	140552633	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	830339	140552633	40362627	52	76711										
PCDHGA4	0	genome.wustl.edu	37	chr5	140735578	140735578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	taaaagccactgatccagatGaaggagccaatggagacgtg	12	8	0	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	140735578	140735578	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	69_37n	1	known	missense	c.811	p.E271K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	22	0	0	27	11	28.95	-	-	-	A	140735578	G	A	140735578	3	1	967	1	0	0	0	0	1	0	0	0	11629	1291	45	2	813	2	PCDHGA4	5	140735578	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	182945	140735578	40179682	53	76712										
PCDHGA6	0	genome.wustl.edu	37	chr5	140754608	140754608	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtttttatgagctgggtgttGaagcccgggatgggccaggt	17	6	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	5	140754608	140754608	G	A	SNP	PCDHGA6	ENST00000517434	human	ensembl	69_37n	1	known	missense	c.958	p.E320K	0.971	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	27	0	0	22	9	29.03	-	-	-	A	140754608	G	A	140754608	3	1	967	1	0	0	0	0	1	0	0	0	11631	1291	45	2	960	2	PCDHGA6	5	140754608	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	19030	140754608	40160652	54	76713										
HIST1H2BD	0	genome.wustl.edu	37	chr6	26158626	26158626	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcttcgagcgcatcgcaggcGaggcttcccgcctggcgcat	13	15	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	26158626	26158626	G	C	SNP	HIST1H2BD	ENST00000289316	human	ensembl	69_37n	1	known	missense	c.229	p.E77Q	0.976	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BD	HGNC	ENSG00000158373	92	0	0	66	150	69.44	-	-	-	C	26158626	G	C	26158626	3	2	967	1	0	0	0	0	1	0	0	0	7194	1059	37	3	231	3	HIST1H2BD	6	26158626	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		26158626	144956441	55	76714										
HIST1H2BG	0	genome.wustl.edu	37	chr6	26216532	26216532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggtgacagccttggtaccttCggacactgcgtgcttggcca	13	12	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	26216532	26216532	C	T	SNP	HIST1H2BG	ENST00000244601	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990	63	0	0	72	32	30.77	-	-	-	T	26216532	C	T	26216532	3	4	967	1	0	0	0	0	1	0	0	0	7197	893	31	1	44	1	HIST1H2BG	6	26216532	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	57906	26216532	144898535	56	76715										
ABCF1	0	genome.wustl.edu	37	chr6	30557749	30557749	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	catccagatctgcaaactctCtggtaccacttcaggggcca	8	14	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	30557749	30557749	C	G	SNP	ABCF1	ENST00000326195	human	ensembl	69_37n	1	known	missense	c.2231	p.S744C	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	24	0	0	22	24	52.17	-	-	-	G	30557749	C	G	30557749	3	3	967	1	0	0	0	0	1	0	0	0	65	913	32	2	2317	2	ABCF1	6	30557749	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	4341217	30557749	140557318	57	76716										
HLA-DQB1	0	genome.wustl.edu	37	chr6	32634373	32634373	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ccggggatccgcaaagccttCttccaagacataactgagac	9	13	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	32634373	32634373	C	T	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	silent	c.12	p.K4	0.001	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	29	0	0	28	10	25.64	-	-	-	T	32634373	C	T	32634373	2	4	967	1	0	0	0	0	0	0	0	1	7257	912	32	2		2	HLA-DQB1	6	32634373	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	2076624	32634373	138480694	58	76717										
KCNK16	0	genome.wustl.edu	37	chr6	39286819	39286819	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggtagtgacgactgtgcctgCaaagaagaaactgctgccaa	12	9	0	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	39286819	39286819	C	A	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	missense	c.304	p.A102S	1.000	pfam_Ion_trans_2	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	47	0	0	37	37	50	-	-	-	A	39286819	C	A	39286819	3	1	967	1	0	0	0	0	1	0	0	0	8117	710	25	4	1030	4	KCNK16	6	39286819	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6652446	39286819	131828248	59	76718										
PRIM2	0	genome.wustl.edu	37	chr6	57512874	57512874	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cctcagcctcccaagtagttGggaccacaggtgtgcacccc	10	16	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	57512874	57512874	G	A	SNP	PRIM2	ENST00000389488	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	9	0	0	7	4	36.36	-	-	-	A	57512874	G	A	57512874	1	1	967	0	1	0	0	0	0	0	0	0	12572	1363	47	4		4	PRIM2	6	57512874	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	18226055	57512874	113602193	60	76719										
SNAP91	0	genome.wustl.edu	37	chr6	84371309	84371309	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	actatagcgccttatgaaggTagacatatcataacctggga	9	8	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	84371309	84371309	T	C	SNP	SNAP91	ENST00000369694	human	ensembl	69_37n	-1	known	missense	c.364	p.T122A	1.000	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609	21	0	0	28	17	36.96	-	-	-	C	84371309	T	C	84371309	3	2	967	1	0	0	0	0	1	0	0	0	14922	1638	57	5	2455	5	SNAP91	6	84371309	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	26858435	84371309	86743758	61	76720										
LIN28B	0	genome.wustl.edu	37	chr6	105526342	105526342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	taaggaatgtagtctacctcCtcagccaaagaagtgccatt	8	10	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	105526342	105526342	C	T	SNP	LIN28B	ENST00000345080	human	ensembl	69_37n	1	known	missense	c.437	p.P146L	1.000	superfamily_Znf_CCHC	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,prints_CSP_DNA-bd,pfscan_Znf_CCHC	-	no_errors	LIN28B	HGNC	ENSG00000187772	81	0	0	86	61	41.5	-	-	-	T	105526342	C	T	105526342	3	4	967	1	0	0	0	0	1	0	0	0	8862	681	24	4	451	4	LIN28B	6	105526342	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	21155033	105526342	65588725	62	76721										
AKD1	0	genome.wustl.edu	37	chr6	109849816	109849816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcaatgctttgtgcctgcagTtgcagttgcagttgcactgt	12	9	0	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	109849816	109849816	T	C	SNP	AKD1	ENST00000341338	human	ensembl	69_37n	-1	known	missense	c.1009	p.T337A	0.001	NULL	pfam_Adenylate_kin,pfam_YHS,pfam_ATPase_AAA_core	-	no_errors	AKD1	HGNC	ENSG00000155085	73	0	0	70	47	40.17	-	-	-	C	109849816	T	C	109849816	3	2	967	1	0	0	0	0	1	0	0	0	460	1740	60	5		5	AKD1	6	109849816	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	4323474	109849816	61265251	63	76722										
ZC3H12D	0	genome.wustl.edu	37	chr6	149782951	149782951	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctagtacctcttgagcatacAtctgctccagcatacctctg	6	14	3	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	6	149782951	149782951	A	G	SNP	ZC3H12D	ENST00000462655	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZC3H12D	HGNC	ENSG00000178199	71	0	0	20	43	68.25	-	-	-	G	149782951	A	G	149782951	1	3	967	0	1	0	0	0	0	0	0	0	17660	232	8	5		5	ZC3H12D	6	149782951	RNA	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	39933135	149782951	21332116	64	76723										
DNAH11	0	genome.wustl.edu	37	chr7	21934280	21934280	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acattttggagaaacttccaGaagagttcaacatggcagag	10	7	1	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	21934280	21934280	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	1	known	missense	c.12811	p.E4271K	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	42	0	0	37	27	42.19	-	-	-	A	21934280	G	A	21934280	3	1	967	1	0	0	0	0	1	0	0	0	4635	943	33	2	13122	2	DNAH11	7	21934280	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		21934280	137204383	65	76724										
GPNMB	0	genome.wustl.edu	37	chr7	23309658	23309658	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cagaacacagtctgcagcccTgtggatgtggatgagatgtg	14	8	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	23309658	23309658	T	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	1	known	silent	c.1329	p.P443	0.001	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	81	0	0	170	82	32.54	-	-	-	C	23309658	T	C	23309658	2	2	967	1	0	0	0	0	0	0	0	1	6670	1567	55	5		5	GPNMB	7	23309658	Silent	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	1375378	23309658	135829005	66	76725										
HNRNPA2B1	0	genome.wustl.edu	37	chr7	26233203	26233203	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgaatttattacctcctccaTagttgtcataaccacctccg	4	13	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	26233203	26233203	T	C	SNP	HNRNPA2B1	ENST00000354667	human	ensembl	69_37n	-1	known	missense	c.869	p.Y290C	1.000	NULL	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566	66	0	0	72	56	43.75	-	-	-	C	26233203	T	C	26233203	3	2	967	1	0	0	0	0	1	0	0	0	7310	1406	49	5	204	5	HNRNPA2B1	7	26233203	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	2923545	26233203	132905460	67	76726										
AUTS2	0	genome.wustl.edu	37	chr7	70255866	70255866	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cagcgctgagcgcacctcccCcgctcatctccacgctgggg	11	19	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	70255866	70255866	C	G	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	1	known	missense	c.3664	p.P1222A	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	12	0	0	10	10	50	-	-	-	G	70255866	C	G	70255866	3	3	967	1	0	0	0	0	1	0	0	0	1229	623	22	4	3883	4	AUTS2	7	70255866	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	44022663	70255866	88882797	68	76727										
TMEM60	0	genome.wustl.edu	37	chr7	77423617	77423617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtgctttctcatccagtttcAacaccaacatgatcaagaag	6	11	3	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	77423617	77423617	A	C	SNP	TMEM60	ENST00000257663	human	ensembl	69_37n	-1	known	missense	c.74	p.L25W	1.000	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211	32	0	0	57	9	13.64	-	-	-	C	77423617	A	C	77423617	3	2	967	1	0	0	0	0	1	0	0	0	16282	131	5	5	331	5	TMEM60	7	77423617	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	7167751	77423617	81715046	69	76728										
ZNF394	0	genome.wustl.edu	37	chr7	99091434	99091434	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcgcattcttcacacttataGggtctttcccctttatgtag	6	11	3	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	99091434	99091434	G	C	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	silent	c.1404	p.P468	0.124	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	57	0	0	59	146	70.53	-	-	-	C	99091434	G	C	99091434	2	2	967	1	0	0	0	0	0	0	0	1	17976	987	35	4		4	ZNF394	7	99091434	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	21667817	99091434	60047229	70	76729										
DOCK4	0	genome.wustl.edu	37	chr7	111584876	111584876	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttatacctaccgattcggatAatgtgcacggtgatataaat	8	7	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	111584876	111584876	A	C	SNP	DOCK4	ENST00000445943	human	ensembl	69_37n	-1	novel	nonsense	c.797	p.L266*	1.000	NULL	pfam_DOCK,superfamily_SH3_domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK4	HGNC	ENSG00000128512	58	0	0	120	27	18.37	-	-	-	C	111584876	A	C	111584876	4	2	967	1	0	0	0	0	0	1	0	0	4724	358	13	5	5238	5	DOCK4	7	111584876	Nonsense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	12493442	111584876	47553787	71	76730										
C7orf60	0	genome.wustl.edu	37	chr7	112535742	112535742	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aagtacagctcttttttcatCtttctcaagtgcttttctct	4	10	5	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	112535742	112535742	C	G	SNP	C7orf60	ENST00000297145	human	ensembl	69_37n	-1	known	missense	c.355	p.D119H	1.000	NULL	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603	47	0	0	144	21	12.73	-	-	-	G	112535742	C	G	112535742	3	3	967	1	0	0	0	0	1	0	0	0	2430	913	32	2	874	2	C7orf60	7	112535742	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	950866	112535742	46602921	72	76731										
METTL2B	0	genome.wustl.edu	37	chr7	128119424	128119424	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacctggtttaataatggaaGaacagcacaagtgttcttcg	10	7	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	128119424	128119424	G	C	SNP	METTL2B	ENST00000262432	human	ensembl	69_37n	1	known	missense	c.415	p.E139Q	0.868	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2B	HGNC	ENSG00000165055	70	0	0	92	12	11.54	-	-	-	C	128119424	G	C	128119424	3	2	967	1	0	0	0	0	1	0	0	0	9571	943	33	2	425	2	METTL2B	7	128119424	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	15583682	128119424	31019239	73	76732										
C7orf49	0	genome.wustl.edu	37	chr7	134853688	134853688	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tttccatctctgtaccttctCacaaagaagagtcagggccc	7	13	3	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	7	134853688	134853688	C	G	SNP	C7orf49	ENST00000459937	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C7orf49	HGNC	ENSG00000122783	29	0	0	7	21	75	-	-	-	G	134853688	C	G	134853688	1	3	967	0	1	0	0	0	0	0	0	0	2421	841	29	2		2	C7orf49	7	134853688	RNA	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6734264	134853688	24284975	74	76733										
RGS20	0	genome.wustl.edu	37	chr8	54852174	54852174	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	atggagatgcggaagcggcaGatgcccgccgcccaggacac	15	13	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	54852174	54852174	G	C	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	1	known	missense	c.549	p.Q183H	1.000	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	23	0	0	50	13	20.63	-	-	-	C	54852174	G	C	54852174	3	2	967	1	0	0	0	0	1	0	0	0	13387	933	33	2	632	2	RGS20	8	54852174	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		54852174	91511848	75	76734										
KLF10	0	genome.wustl.edu	37	chr8	103667808	103667808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acttaccgcagtctgctggaGagaggcaccgaagttgagca	13	10	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	103667808	103667808	G	C	SNP	KLF10	ENST00000285407	human	ensembl	69_37n	-1	known	missense	c.22	p.L8V	0.995	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090	117	0	0	430	53	10.97	-	-	-	C	103667808	G	C	103667808	3	2	967	1	0	0	0	0	1	0	0	0	8391	942	33	2	1443	2	KLF10	8	103667808	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	48815634	103667808	42696214	76	76735										
PKHD1L1	0	genome.wustl.edu	37	chr8	110394764	110394764	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gttacggaaaataacacctgCaaaggtcacatcaacagctg	8	10	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	110394764	110394764	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	nonsense	c.381	p.C127*	0.997	smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	35	0	0	66	22	25	-	-	-	A	110394764	C	A	110394764	4	1	967	1	0	0	0	0	0	1	0	0	12046	718	25	4	395	4	PKHD1L1	8	110394764	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6726956	110394764	35969258	77	76736										
PHF20L1	0	genome.wustl.edu	37	chr8	133855028	133855028	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctgggagctcagatgatgatGatgttagtagtttggaagaa	14	3	1	5			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	133855028	133855028	G	C	SNP	PHF20L1	ENST00000220847	human	ensembl	69_37n	1	known	missense	c.817	p.D273H	0.954	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	23	0	0	32	6	15.79	-	-	-	C	133855028	G	C	133855028	3	2	967	1	0	0	0	0	1	0	0	0	11906	1290	45	2	2822	2	PHF20L1	8	133855028	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	23460264	133855028	12508994	78	76737										
FLJ43860	0	genome.wustl.edu	37	chr8	142480722	142480722	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgacttggaagctgcagagcTggaagatgtggttctttgcc	14	7	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	142480722	142480722	T	A	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.2147	p.Q716L	0.004	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	34	0	0	24	69	74.19	-	-	-	A	142480722	T	A	142480722	3	1	967	1	0	0	0	0	1	0	0	0	5976	1580	55	5	1865	5	FLJ43860	8	142480722	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	8625694	142480722	3883300	79	76738										
NAPRT1	0	genome.wustl.edu	37	chr8	144657806	144657806	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ccctaccttatagacgccacCcagggaaggctgttgggggc	13	13	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	8	144657806	144657806	C	A	SNP	NAPRT1	ENST00000276844	human	ensembl	69_37n	-1	known	missense	c.1174	p.G392C	1.000	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-rel,tigrfam_Nic_PRibTrfase_put	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-rel,tigrfam_Nic_PRibTrfase_put	-	no_errors	NAPRT1	HGNC	ENSG00000147813	36	0	0	95	55	36.67	-	-	-	A	144657806	C	A	144657806	3	1	967	1	0	0	0	0	1	0	0	0	10237	623	22	4	462	4	NAPRT1	8	144657806	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	2177084	144657806	1706216	80	76739										
RPS6	0	genome.wustl.edu	37	chr9	19376334	19376334	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tagaagtagaagctcgcagaGaggaaagtctgcgtctcttc	12	8	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	9	19376334	19376334	G	C	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	missense	c.707	p.S236C	1.000	pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	35	0	0	67	20	22.99	-	-	-	C	19376334	G	C	19376334	3	2	967	1	0	0	0	0	1	0	0	0	13735	942	33	2	46	2	RPS6	9	19376334	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		19376334	121837097	81	76740										
IFNK	0	genome.wustl.edu	37	chr9	27524613	27524613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttctatgaaatgtccctacaGgccttcaacatcttcagcca	5	13	4	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	9	27524613	27524613	G	A	SNP	IFNK	ENST00000276943	human	ensembl	69_37n	1	known	silent	c.279	p.Q93	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNK	HGNC	ENSG00000147896	24	0	0	77	16	17.2	-	-	-	A	27524613	G	A	27524613	2	1	967	1	0	0	0	0	0	0	0	1	7605	991	35	4		4	IFNK	9	27524613	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	8148279	27524613	113688818	82	76741										
FOXD4L3	0	genome.wustl.edu	37	chr9	70918813	70918813	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggagggcaagggtctggcgtCgccaccgggaggcggatgca	20	10	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	9	70918813	70918813	C	G	SNP	FOXD4L3	ENST00000342833	human	ensembl	69_37n	1	known	missense	c.946	p.R316G	0.024	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559	40	0	0	34	11	24.44	-	-	-	G	70918813	C	G	70918813	3	3	967	1	0	0	0	0	1	0	0	0	6048	884	31	3	948	3	FOXD4L3	9	70918813	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	43394200	70918813	70294618	83	76742										
HDHD3	0	genome.wustl.edu	37	chr9	116136803	116136803	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgggaaatgtcttcacagcaCaagatcctagaatgaaaaat	8	7	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	9	116136803	116136803	C	G	SNP	HDHD3	ENST00000485934	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	HDHD3	HGNC	ENSG00000119431	19	0	0	9	26	72.22	-	-	-	G	116136803	C	G	116136803	1	3	967	0	1	0	0	0	0	0	0	0	7075	493	17	4		4	HDHD3	9	116136803	RNA	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	45217990	116136803	25076628	84	76743										
COL27A1	0	genome.wustl.edu	37	chr9	117027232	117027232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aggaccccagggcagaccggGccggcctggacagcaggtat	16	13	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	9	117027232	117027232	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	1	known	missense	c.3278	p.G1093D	0.999	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	30	0	0	49	7	12.5	-	-	-	A	117027232	G	A	117027232	3	1	967	1	0	0	0	0	1	0	0	0	3715	1203	42	4	3396	4	COL27A1	9	117027232	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	890429	117027232	24186199	85	76744										
CREM	0	genome.wustl.edu	37	chr10	35495832	35495832	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttttactgcagctgccactgGtgacatgccaacttaccaga	8	12	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	35495832	35495832	G	T	SNP	CREM	ENST00000395895	human	ensembl	69_37n	1	known	missense	c.791	p.G264V	1.000	prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREM	HGNC	ENSG00000095794	66	0	0	106	42	28.38	-	-	-	T	35495832	G	T	35495832	3	4	967	1	0	0	0	0	1	0	0	0	3898	1261	44	4	882	4	CREM	10	35495832	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		35495832	100038915	86	76745										
SAMD8	0	genome.wustl.edu	37	chr10	76924488	76924488	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggctcctggttcttcttcttCacaagcacaggtacctcatt	7	13	5	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	76924488	76924488	C	G	SNP	SAMD8	ENST00000372690	human	ensembl	69_37n	1	known	missense	c.853	p.H285D	1.000	NULL	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671	46	0	0	41	11	21.15	-	-	-	G	76924488	C	G	76924488	3	3	967	1	0	0	0	0	1	0	0	0	13911	826	29	2	670	2	SAMD8	10	76924488	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	41428656	76924488	58610259	87	76746										
MYOF	0	genome.wustl.edu	37	chr10	95095846	95095846	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	taatttctcattaaaatgcaGgtaaggtctaaaatcaaaag	6	5	3	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	95095846	95095846	G	C	SNP	MYOF	ENST00000463541	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.121	-	-	-	no_errors	MYOF	HGNC	ENSG00000138119	33	0	0	7	15	68.18	-	-	-	C	95095846	G	C	95095846	1	2	967	0	1	0	0	0	0	0	0	0	10161	1015	35	4		4	MYOF	10	95095846	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	18171358	95095846	40438901	88	76747										
EIF3A	0	genome.wustl.edu	37	chr10	120802126	120802126	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tatcttcctcaggaccacgtCtagggcctctgtcatcatcc	7	15	6	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	120802126	120802126	C	G	SNP	EIF3A	ENST00000369144	human	ensembl	69_37n	-1	known	missense	c.2906	p.R969T	0.308	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581	50	0	0	20	46	69.7	-	-	-	G	120802126	C	G	120802126	3	3	967	1	0	0	0	0	1	0	0	0	5047	913	32	2	1258	2	EIF3A	10	120802126	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	25706280	120802126	14732621	89	76748										
FANK1	0	genome.wustl.edu	37	chr10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gggagcagccgaccatggagCcccagagtaagggaggcccg	17	12	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	127585218	127585218	C	A	SNP	FANK1	ENST00000368693	human	ensembl	69_37n	1	known	missense	c.7	p.P3T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	23	0	0	28	5	15.15	-	-	-	A	127585218	C	A	127585218	3	1	967	1	0	0	0	0	1	0	0	0	5718	739	26	4	9	4	FANK1	10	127585218	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6783092	127585218	7949529	90	76749										
CYP2E1	0	genome.wustl.edu	37	chr10	135347295	135347295	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gagcgcttgtacacaatggaCggtatcaccgtgactgtggc	13	10	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	10	135347295	135347295	C	A	SNP	CYP2E1	ENST00000252945	human	ensembl	69_37n	1	known	missense	c.861	p.D287E	0.001	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2E-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649	71	0	0	15	40	71.43	-	-	-	A	135347295	C	A	135347295	3	1	967	1	0	0	0	0	1	0	0	0	4201	535	19	3	883	3	CYP2E1	10	135347295	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	7762077	135347295	187452	91	76750										
ZNF195	0	genome.wustl.edu	37	chr11	3392236	3392236	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tctgctgcctcctgtctcttCacattccagggctcttttcg	7	15	4	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	3392236	3392236	C	T	SNP	ZNF195	ENST00000399602	human	ensembl	69_37n	-1	known	silent	c.195	p.V65	0.001	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF195	HGNC	ENSG00000005801	24	0	0	29	30	50.85	-	-	-	T	3392236	C	T	3392236	2	4	967	1	0	0	0	0	0	0	0	1	17854	813	29	2		2	ZNF195	11	3392236	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		3392236	131614280	92	76751										
OR51B4	0	genome.wustl.edu	37	chr11	5322396	5322396	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	atgaggtgcatgtttcccaaAcctgtgaatgaatgacagtc	10	8	0	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	5322396	5322396	A	T	SNP	OR51B4	ENST00000380224	human	ensembl	69_37n	-1	known	missense	c.781	p.F261I	0.998	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251	56	0	0	68	44	39.29	-	-	-	T	5322396	A	T	5322396	3	4	967	1	0	0	0	0	1	0	0	0	11163	43	2	5	154	5	OR51B4	11	5322396	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	1930160	5322396	129684120	93	76752										
NR1H3	0	genome.wustl.edu	37	chr11	47289890	47289890	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agccctgcatgcctacgtctCcatccaccatccccatgtga	6	18	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	47289890	47289890	C	G	SNP	NR1H3	ENST00000441012	human	ensembl	69_37n	1	known	missense	c.1181	p.S394C	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	-	no_errors	NR1H3	HGNC	ENSG00000025434	17	0	0	42	12	22.22	-	-	-	G	47289890	C	G	47289890	3	3	967	1	0	0	0	0	1	0	0	0	10691	855	30	2	1211	2	NR1H3	11	47289890	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	41967494	47289890	87716626	94	76753										
C11orf48	0	genome.wustl.edu	37	chr11	62432621	62432621	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	accgttcggggccggttgatCtttccccccggagctcccat	11	16	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	62432621	62432621	C	G	SNP	C11orf48	ENST00000524958	human	ensembl	69_37n	-1	putative	missense	c.21	p.K7N	1.000	NULL	NULL	-	no_errors	C11orf48	HGNC	ENSG00000162194	60	0	0	87	22	20.18	-	-	-	G	62432621	C	G	62432621	3	3	967	1	0	0	0	0	1	0	0	0	1655	928	32	2		2	C11orf48	11	62432621	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	15142731	62432621	72573895	95	76754										
SIPA1	0	genome.wustl.edu	37	chr11	65413412	65413412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cacgatgctgccttacacccCtaataaccagcagcaggtgt	8	14	0	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	65413412	65413412	C	G	SNP	SIPA1	ENST00000394224	human	ensembl	69_37n	1	known	missense	c.1247	p.P416R	1.000	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1	HGNC	ENSG00000213445	48	0	0	51	40	43.96	-	-	-	G	65413412	C	G	65413412	3	3	967	1	0	0	0	0	1	0	0	0	14417	681	24	4	1265	4	SIPA1	11	65413412	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	2980791	65413412	69593104	96	76755										
DPP3	0	genome.wustl.edu	37	chr11	66276616	66276616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	catccgatccttctctgagcGtttcccagaggatggacccg	10	14	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	66276616	66276616	G	A	SNP	DPP3	ENST00000360510	human	ensembl	69_37n	1	known	missense	c.2108	p.R703H	1.000	pirsf_Pept_49_dipeptidyl-pept-3_euk	pirsf_Pept_49_dipeptidyl-pept-3_euk	-	no_errors	DPP3	HGNC	ENSG00000254986	28	0	0	18	22	55	-	-	-	A	66276616	G	A	66276616	3	1	967	1	0	0	0	0	1	0	0	0	4763	1145	40	1	2174	1	DPP3	11	66276616	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	863204	66276616	68729900	97	76756										
ATM	0	genome.wustl.edu	37	chr11	108126963	108126963	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttacaaattcagaaactcttGtccggtgttcacgtcttttg	7	9	4	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	11	108126963	108126963	G	C	SNP	ATM	ENST00000278616	human	ensembl	69_37n	1	known	missense	c.2146	p.V716L	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	63	0	0	7	41	85.42	-	-	-	C	108126963	G	C	108126963	3	2	967	1	0	0	0	0	1	0	0	0	1113	1377	48	4	2196	4	ATM	11	108126963	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	41850347	108126963	26879553	98	76757										
CACNA1C	0	genome.wustl.edu	37	chr12	2797736	2797736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gctggcccccacagcccgtcCccaccctgcggcttgagggg	13	19	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	12	2797736	2797736	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.6121	p.P2041S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	110	0	0	141	117	45.17	-	-	-	T	2797736	C	T	2797736	3	4	967	1	0	0	0	0	1	0	0	0	2565	623	22	4	6799	4	CACNA1C	12	2797736	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		2797736	131054159	99	76758										
TEAD4	0	genome.wustl.edu	37	chr12	3131102	3131102	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacatccgccaaatctatgaCaaattcccggagaaaaaggg	9	10	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	12	3131102	3131102	C	G	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	1	known	missense	c.816	p.D272E	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	43	0	0	50	36	41.86	-	-	-	G	3131102	C	G	3131102	3	3	967	1	0	0	0	0	1	0	0	0	15836	477	17	4	846	4	TEAD4	12	3131102	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	333366	3131102	130720793	100	76759										
C12orf56	0	genome.wustl.edu	37	chr12	64712481	64712481	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctctgtgaaggggaatctaaGagggaatttcctaagtaaaa	11	5	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	12	64712481	64712481	G	C	SNP	C12orf56	ENST00000543942	human	ensembl	69_37n	-1	putative	silent	c.768	p.L256	0.001	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	39	0	0	42	8	16	-	-	-	C	64712481	G	C	64712481	2	2	967	1	0	0	0	0	0	0	0	1	1712	929	33	2		2	C12orf56	12	64712481	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	61581379	64712481	69139414	101	76760										
C12orf56	0	genome.wustl.edu	37	chr12	64712734	64712734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacagagagttgagtccttgGatggtgtactgctctcctgc	13	9	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	12	64712734	64712734	G	A	SNP	C12orf56	ENST00000543942	human	ensembl	69_37n	-1	putative	missense	c.515	p.S172F	0.001	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	59	0	0	42	28	40	-	-	-	A	64712734	G	A	64712734	3	1	967	1	0	0	0	0	1	0	0	0	1712	1174	41	2	1393	2	C12orf56	12	64712734	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	253	64712734	69139161	102	76761										
AACS	0	genome.wustl.edu	37	chr12	125550166	125550166	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cgccccggtcgggaggagatCctggagtgccaggtgatgtg	18	10	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	12	125550166	125550166	C	A	SNP	AACS	ENST00000316519	human	ensembl	69_37n	1	known	silent	c.36	p.I12	0.999	NULL	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	31	0	0	77	18	18.95	-	-	-	A	125550166	C	A	125550166	2	1	967	1	0	0	0	0	0	0	0	1	9	845	30	2		2	AACS	12	125550166	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	60837432	125550166	8301729	103	76762										
THSD1	0	genome.wustl.edu	37	chr13	52952529	52952529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aaggcggtagctgaacagagGtgggattatcttctgggcgt	16	6	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	13	52952529	52952529	G	A	SNP	THSD1	ENST00000258613	human	ensembl	69_37n	-1	known	missense	c.1576	p.P526S	0.979	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114	13	0	0	4	13	76.47	-	-	-	A	52952529	G	A	52952529	3	1	967	1	0	0	0	0	1	0	0	0	15972	1261	44	4	986	4	THSD1	13	52952529	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		52952529	62217349	104	76763										
RABGGTA	0	genome.wustl.edu	37	chr14	24738317	24738317	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agccaacggtgataaaaccaGgcactctggtcattggggtc	12	10	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	14	24738317	24738317	G	C	SNP	RABGGTA	ENST00000216840	human	ensembl	69_37n	-1	known	silent	c.684	p.A228	0.998	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	pfam_Prenyl_trans_a,pfam_RabGGT_asu_insert-domain,pfam_Leu-rich_rpt,superfamily_RabGGT_asu_insert-domain,pfscan_Prenyl_trans_a	-	no_errors	RABGGTA	HGNC	ENSG00000100949	40	0	0	7	57	89.06	-	-	-	C	24738317	G	C	24738317	2	2	967	1	0	0	0	0	0	0	0	1	13050	987	35	4		4	RABGGTA	14	24738317	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		24738317	82611223	105	76764										
MTHFD1	0	genome.wustl.edu	37	chr14	64894165	64894165	+	Missense_Mutation	SNP	C	C	T													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgcgtgtgtgcgacagccttCtcagggccccacctttggaa							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	14	64894165	64894165	C	T	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	missense	c.1406	p.S469F	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	57	0	0	7	90	92.78	-	-	-	T	64894165	C	T	64894165	3	4	967	1	0	0	0	0	1	0	0	0	9999	913	32	2	1284	2	MTHFD1	14	64894165	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	40155848	64894165	42455375	106	76765	533	2								
MTHFD1	0	genome.wustl.edu	37	chr14	64894167	64894167	+	Nonsense_Mutation	SNP	C	C	T													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cgtgtgtgcgacagccttctCagggccccacctttggaata							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	14	64894167	64894167	C	T	SNP	MTHFD1	ENST00000216605	human	ensembl	69_37n	1	known	nonsense	c.1408	p.Q470*	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714	60	0	0	7	91	92.86	-	-	-	T	64894167	C	T	64894167	4	4	967	1	0	0	0	0	0	1	0	0	9999	827	29	2	1286	2	MTHFD1	14	64894167	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	2	64894167	42455373	107	76766	533	2								
NEK9	0	genome.wustl.edu	37	chr14	75558062	75558062	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	taaaccttccattcctcggtCtgcttccattgttcctcgga	6	14	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	14	75558062	75558062	C	G	SNP	NEK9	ENST00000238616	human	ensembl	69_37n	-1	known	missense	c.2353	p.D785H	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638	39	0	0	51	18	26.09	-	-	-	G	75558062	C	G	75558062	3	3	967	1	0	0	0	0	1	0	0	0	10403	913	32	2	602	2	NEK9	14	75558062	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	10663895	75558062	31791478	108	76767										
PPP2R5C	0	genome.wustl.edu	37	chr14	102368210	102368210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcagttggccaaatgtgtctCcagcccacacttccaggtat	9	13	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	14	102368210	102368210	C	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	69_37n	1	known	missense	c.1100	p.S367Y	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	28	0	0	33	19	36.54	-	-	-	A	102368210	C	A	102368210	3	1	967	1	0	0	0	0	1	0	0	0	12471	855	30	2	1410	2	PPP2R5C	14	102368210	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	26810148	102368210	4981330	109	76768										
HERC2	0	genome.wustl.edu	37	chr15	28501072	28501072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gactccaaccctccatcagcCatcaagctgcccaccagaag	6	18	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	15	28501072	28501072	C	T	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.2817	p.M939I	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	82	0	0	79	51	39.23	-	-	-	T	28501072	C	T	28501072	3	4	967	1	0	0	0	0	1	0	0	0	7109	594	21	4	11987	4	HERC2	15	28501072	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		28501072	74030320	110	76769										
MGA	0	genome.wustl.edu	37	chr15	42059326	42059326	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aggtgatgccttgtttggcaCctatagctgccaaagttggg	13	8	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	15	42059326	42059326	C	A	SNP	MGA	ENST00000219905	human	ensembl	69_37n	1	known	missense	c.9046	p.P3016T	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	17	0	0	5	14	73.68	-	-	-	A	42059326	C	A	42059326	3	1	967	1	0	0	0	0	1	0	0	0	9611	507	18	4	9136	4	MGA	15	42059326	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	13558254	42059326	60472066	111	76770										
ST8SIA2	0	genome.wustl.edu	37	chr15	92981772	92981772	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tttgggacttgtgccatcgtGggcaactcgggggtcttgct	15	9	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	15	92981772	92981772	G	C	SNP	ST8SIA2	ENST00000268164	human	ensembl	69_37n	1	known	silent	c.480	p.V160	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557	51	0	0	81	15	15.62	-	-	-	C	92981772	G	C	92981772	2	2	967	1	0	0	0	0	0	0	0	1	15323	1335	47	4		4	ST8SIA2	15	92981772	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	50922446	92981772	9549620	112	76771										
AXIN1	0	genome.wustl.edu	37	chr16	396354	396354	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cctgtccctgacccagagctCtggtcactacagactttggg	10	14	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	16	396354	396354	C	G	SNP	AXIN1	ENST00000262320	human	ensembl	69_37n	-1	known	missense	c.672	p.Q224H	1.000	NULL	pfam_DIX,pfam_Regulat_G_prot_signal,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	AXIN1	HGNC	ENSG00000103126	66	0	0	40	20	33.33	-	-	-	G	396354	C	G	396354	3	3	967	1	0	0	0	0	1	0	0	0	1240	912	32	2	1956	2	AXIN1	16	396354	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		396354	89958399	113	76772										
IGFALS	0	genome.wustl.edu	37	chr16	1841132	1841132	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agctccgccagcccccacagGctctgctcctcaatgcccac	7	21	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	16	1841132	1841132	G	C	SNP	IGFALS	ENST00000415638	human	ensembl	69_37n	-1	known	missense	c.1401	p.S467R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769	30	0	0	3	19	86.36	-	-	-	C	1841132	G	C	1841132	3	2	967	1	0	0	0	0	1	0	0	0	7631	1194	42	4	534	4	IGFALS	16	1841132	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1444778	1841132	88513621	114	76773										
NOMO1	0	genome.wustl.edu	37	chr16	14962408	14962408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tggctttgcttccttaggaaTtttatcaggatggaaatggg	12	5	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	16	14962408	14962408	T	G	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	1	known	missense	c.1810	p.F604V	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	66	0	0	72	41	36.28	-	-	-	G	14962408	T	G	14962408	3	3	967	1	0	0	0	0	1	0	0	0	10603	1493	52	5	1872	5	NOMO1	16	14962408	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	13121276	14962408	75392345	115	76774										
HYDIN	0	genome.wustl.edu	37	chr16	70871623	70871623	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtacccttccctttgatttcGactgtttgttgtgagagccc	9	11	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	16	70871623	70871623	G	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.13209	p.V4403	0.793	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	112	0	0	40	69	63.3	-	-	-	C	70871623	G	C	70871623	2	2	967	1	0	0	0	0	0	0	0	1	7521	1045	37	3		3	HYDIN	16	70871623	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	55909215	70871623	19483130	116	76775										
SMG6	0	genome.wustl.edu	37	chr17	1985179	1985179	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ttcttggcccgaagctccctGatgtcatcctcgcctccgct	8	17	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	1985179	1985179	G	C	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.3606	p.I1202M	1.000	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	34	0	0	7	46	86.79	-	-	-	C	1985179	G	C	1985179	3	2	967	1	0	0	0	0	1	0	0	0	14886	1280	45	2	673	2	SMG6	17	1985179	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		1985179	79210031	117	76776										
TP53	0	genome.wustl.edu	37	chr17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acactatgtcgaaaagtgttTctgtcatccaaatactccac							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	7578222	7578223	TC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	33	0	0	14	42	75	-	-	-	-	7578223	TC	-	7578222	7	5	967	1	0	1	0	1	0	0	0	0	16477	1780	62	0	667	0	TP53	17	7578222	Frame_Shift_Del	DEL	TC	TCGA-OL-A5RW-01A-11D-A28B-09	5593043	7578222	73616988	118	76777										
COX10	0	genome.wustl.edu	37	chr17	14095510	14095510	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	atcccgcctgtcatgggctgGacagcggccacgggcagcct	14	15	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	14095510	14095510	G	C	SNP	COX10	ENST00000261643	human	ensembl	69_37n	1	known	missense	c.900	p.W300C	1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	99	0	0	74	60	44.78	-	-	-	C	14095510	G	C	14095510	3	2	967	1	0	0	0	0	1	0	0	0	3792	1183	41	2	922	2	COX10	17	14095510	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	6517288	14095510	67099700	119	76778										
DHRS13	0	genome.wustl.edu	37	chr17	27225510	27225510	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcctgaattcggtgcgtcatCttagacaaatctggtgagct	11	9	3	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	27225510	27225510	C	T	SNP	DHRS13	ENST00000378895	human	ensembl	69_37n	-1	known	silent	c.1083	p.K361	0.655	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	38	0	0	20	7	25.93	-	-	-	T	27225510	C	T	27225510	2	4	967	1	0	0	0	0	0	0	0	1	4525	912	32	2		2	DHRS13	17	27225510	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	13130000	27225510	53969700	120	76779										
KRTAP4-9	0	genome.wustl.edu	37	chr17	39261862	39261862	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agctgctgtcagaccacctgTtgcaggaccacctgctaccg	10	15	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	39261862	39261862	T	C	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	1	known	silent	c.222	p.C74	0.039	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	67	0	0	13	10	43.48	-	-	-	C	39261862	T	C	39261862	2	2	967	1	0	0	0	0	0	0	0	1	8611	1731	60	5		5	KRTAP4-9	17	39261862	Silent	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	12036352	39261862	41933348	121	76780										
KRT35	0	genome.wustl.edu	37	chr17	39637188	39637188	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tagctgcttctgcccagaccCactgagcaggcagagaaact	10	13	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	39637188	39637188	C	A	SNP	KRT35	ENST00000393989	human	ensembl	69_37n	-1	known	silent	c.162	p.V54	0.000	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079	41	0	0	11	71	86.59	-	-	-	A	39637188	C	A	39637188	2	1	967	1	0	0	0	0	0	0	0	1	8525	581	21	4		4	KRT35	17	39637188	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	375326	39637188	41558022	122	76781										
WNK4	0	genome.wustl.edu	37	chr17	40936480	40936480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cccgagatgtacgaggaaaaGtacgatgaggccgtggacgt	15	8	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	40936480	40936480	G	T	SNP	WNK4	ENST00000246914	human	ensembl	69_37n	1	known	missense	c.1053	p.K351N	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK4	HGNC	ENSG00000126562	30	0	0	35	42	54.55	-	-	-	T	40936480	G	T	40936480	3	4	967	1	0	0	0	0	1	0	0	0	17477	1020	36	4	1067	4	WNK4	17	40936480	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1299292	40936480	40258730	123	76782										
HEXIM1	0	genome.wustl.edu	37	chr17	43227266	43227269	+	Frame_Shift_Del	DEL	AGCG	AGCG	-													0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ccgccaaatccgacgacaccAgcgatgacgacttcatggaa							TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	AGCG	AGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	43227266	43227269	AGCG	-	DEL	HEXIM1	ENST00000332499	human	ensembl	69_37n	1	known	frame_shift_del	c.709_712	p.S237fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	HEXIM1	HGNC	ENSG00000186834	32	0	0	30	14	31.82	-	-	-	-	43227269	AGCG	-	43227266	7	5	967	1	0	1	0	1	0	0	0	0	7127	188	7	0	711	0	HEXIM1	17	43227266	Frame_Shift_Del	DEL	AGCG	TCGA-OL-A5RW-01A-11D-A28B-09	2290786	43227266	37967944	124	76783										
MYCBPAP	0	genome.wustl.edu	37	chr17	48598683	48598683	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tccatctctcggaggatattGatggcctggaggtggtgggc	16	8	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	48598683	48598683	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	69_37n	1	known	missense	c.1168	p.D390N	0.992	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	33	0	0	31	5	13.89	-	-	-	A	48598683	G	A	48598683	3	1	967	1	0	0	0	0	1	0	0	0	10091	1290	45	2	1202	2	MYCBPAP	17	48598683	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	5371417	48598683	32596527	125	76784										
SEPT4	0	genome.wustl.edu	37	chr17	56603978	56603978	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cacacacacacacacactctGctccctgcccccggtcttcc	4	22	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	56603978	56603978	G	A	SNP	SEPT4	ENST00000580740	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SEPT4	HGNC	ENSG00000108387	9	0	0	2	17	89.47	-	-	-	A	56603978	G	A	56603978	1	1	967	0	1	0	0	0	0	0	0	0	14154	1334	46	4		4	SEPT4	17	56603978	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	8005295	56603978	24591232	126	76785										
METTL2A	0	genome.wustl.edu	37	chr17	60503872	60503872	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacctggtttaataatggaaGaacagcacaagtgttcttca	9	7	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	60503872	60503872	G	C	SNP	METTL2A	ENST00000311506	human	ensembl	69_37n	1	known	missense	c.415	p.E139Q	0.984	pirsf_MeTrfase_METTL2_prd	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase_METTL2_prd	-	no_errors	METTL2A	HGNC	ENSG00000087995	33	0	0	46	11	19.3	-	-	-	C	60503872	G	C	60503872	3	2	967	1	0	0	0	0	1	0	0	0	9570	943	33	2	425	2	METTL2A	17	60503872	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	3899894	60503872	20691338	127	76786										
BAIAP2	0	genome.wustl.edu	37	chr17	79078393	79078393	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cgtatgcgggtgaaggccatCttctcccacgctgctgggga	14	12	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	79078393	79078393	C	G	SNP	BAIAP2	ENST00000321300	human	ensembl	69_37n	1	known	missense	c.1146	p.I382M	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866	74	0	0	54	27	33.33	-	-	-	G	79078393	C	G	79078393	3	3	967	1	0	0	0	0	1	0	0	0	1305	903	32	2	1184	2	BAIAP2	17	79078393	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	18574521	79078393	2116817	128	76787										
AZI1	0	genome.wustl.edu	37	chr17	79172751	79172751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	caggcagcggtctccggggcCtgcagcagggaggccaccac	16	15	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	79172751	79172751	C	T	SNP	AZI1	ENST00000269392	human	ensembl	69_37n	-1	known	missense	c.1213	p.G405S	0.059	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	32	0	0	37	31	45.59	-	-	-	T	79172751	C	T	79172751	3	4	967	1	0	0	0	0	1	0	0	0	1244	681	24	4	2093	4	AZI1	17	79172751	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	94358	79172751	2022459	129	76788										
SECTM1	0	genome.wustl.edu	37	chr17	80280173	80280173	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tccacagttcagcggaggctCtgctcaggccctgctgggct	13	14	3	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	17	80280173	80280173	C	G	SNP	SECTM1	ENST00000269389	human	ensembl	69_37n	-1	known	missense	c.611	p.R204T	0.000	NULL	NULL	-	no_errors	SECTM1	HGNC	ENSG00000141574	26	0	0	21	11	34.38	-	-	-	G	80280173	C	G	80280173	3	3	967	1	0	0	0	0	1	0	0	0	14096	913	32	2	139	2	SECTM1	17	80280173	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1107422	80280173	915037	130	76789										
KDM4B	0	genome.wustl.edu	37	chr19	5144267	5144267	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcaccctcccaggtccaactCctgagggccgtgtccctagg	11	17	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	5144267	5144267	C	G	SNP	KDM4B	ENST00000159111	human	ensembl	69_37n	1	known	silent	c.2745	p.L915	0.001	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	13	0	0	34	16	32	-	-	-	G	5144267	C	G	5144267	2	3	967	1	0	0	0	0	0	0	0	1	8183	842	30	2		2	KDM4B	19	5144267	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		5144267	53984716	131	76790										
SAFB2	0	genome.wustl.edu	37	chr19	5587292	5587292	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gtgggggtacggggggggatGagggtgtgggtgagggactc	26	3	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	5587292	5587292	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.2824	p.H942Y	0.823	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	21	0	0	19	13	40.62	-	-	-	A	5587292	G	A	5587292	3	1	967	1	0	0	0	0	1	0	0	0	13893	1290	45	2	41	2	SAFB2	19	5587292	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	443025	5587292	53541691	132	76791										
CCDC159	0	genome.wustl.edu	37	chr19	11464295	11464295	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctgaccctcctctgaacccgTtcccccaacgggatctggca	8	18	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	11464295	11464295	T	C	SNP	CCDC159	ENST00000586479	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC159	HGNC	ENSG00000183401	28	0	0	44	27	38.03	-	-	-	C	11464295	T	C	11464295	1	2	967	0	1	0	0	0	0	0	0	0	2817	1740	60	5		5	CCDC159	19	11464295	RNA	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	5877003	11464295	47664688	133	76792										
ZNF675	0	genome.wustl.edu	37	chr19	23836666	23836666	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agtatgaatgtttttatgttCagtaagttttgaggatcggt	11	2	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	23836666	23836666	C	A	SNP	ZNF675	ENST00000359788	human	ensembl	69_37n	-1	known	nonsense	c.1069	p.E357*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	27	0	0	37	22	37.29	-	-	-	A	23836666	C	A	23836666	4	1	967	1	0	0	0	0	0	1	0	0	18178	835	29	2	641	2	ZNF675	19	23836666	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	12372371	23836666	35292317	134	76793										
RYR1	0	genome.wustl.edu	37	chr19	38955362	38955362	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gaagacaaaactccccaagaCgtgagtgtgggcagccaggt	13	10	0	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	38955362	38955362	C	G	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	1	known	missense	c.2870	p.T957R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	19	0	0	27	16	37.21	-	-	-	G	38955362	C	G	38955362	3	3	967	1	0	0	0	0	1	0	0	0	13854	550	19	3	2960	3	RYR1	19	38955362	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	15118696	38955362	20173621	135	76794										
CEACAM20	0	genome.wustl.edu	37	chr19	45017248	45017248	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	taccgtctggcatttctgatGtagagaaaatagcccagttc	9	9	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	45017248	45017248	G	A	SNP	CEACAM20	ENST00000316962	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.068	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	20	0	0	16	13	44.83	-	-	-	A	45017248	G	A	45017248	1	1	967	0	1	0	0	0	0	0	0	0	3220	1372	48	4		4	CEACAM20	19	45017248	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	6061886	45017248	14111735	136	76795										
NKPD1	0	genome.wustl.edu	37	chr19	45656343	45656343	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cctccagcaccacgcgcagcCtgcgccgctggtagatctcc	10	19	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	45656343	45656343	C	G	SNP	NKPD1	ENST00000317951	human	ensembl	69_37n	-1	known	missense	c.1352	p.R451T	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846	38	0	0	59	28	32.18	-	-	-	G	45656343	C	G	45656343	3	3	967	1	0	0	0	0	1	0	0	0	10518	681	24	4	1150	4	NKPD1	19	45656343	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	639095	45656343	13472640	137	76796										
CCDC114	0	genome.wustl.edu	37	chr19	48800320	48800320	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acgtggtctctgctggacccGaggcctccgctcgaatcaga	12	14	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	48800320	48800320	G	A	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	silent	c.1926	p.L642	0.003	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	41	0	0	56	48	45.28	-	-	-	A	48800320	G	A	48800320	2	1	967	1	0	0	0	0	0	0	0	1	2776	1045	37	1		1	CCDC114	19	48800320	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	3143977	48800320	10328663	138	76797										
CA11	0	genome.wustl.edu	37	chr19	49142659	49142659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	agccctgataggtgatgaagCcgaaggattcagggaacagg	15	7	1	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	49142659	49142659	C	T	SNP	CA11	ENST00000084798	human	ensembl	69_37n	-1	known	missense	c.698	p.G233D	0.985	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA11	HGNC	ENSG00000063180	33	0	0	47	9	15.79	-	-	-	T	49142659	C	T	49142659	3	4	967	1	0	0	0	0	1	0	0	0	2537	739	26	4	300	4	CA11	19	49142659	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	342339	49142659	9986324	139	76798										
PPP1R15A	0	genome.wustl.edu	37	chr19	49378977	49378977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcttgctcgggatcgcagccGcttcgcacgccgcatcaccc	11	18	1	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	49378977	49378977	G	T	SNP	PPP1R15A	ENST00000200453	human	ensembl	69_37n	1	known	missense	c.1772	p.R591L	1.000	pfam_Prot_Pase1_reg-su15A/B_C	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074	20	0	0	17	16	48.48	-	-	-	T	49378977	G	T	49378977	3	4	967	1	0	0	0	0	1	0	0	0	12440	1087	38	3	1778	3	PPP1R15A	19	49378977	Missense_Mutation	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	236318	49378977	9750006	140	76799										
SHANK1	0	genome.wustl.edu	37	chr19	51219970	51219970	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ctgaagaccatcatgctgaaGtgggcgtcgtctgggacgga	15	9	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	51219970	51219970	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.207	p.H69	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	25	0	0	24	20	45.45	-	-	-	A	51219970	G	A	51219970	2	1	967	1	0	0	0	0	0	0	0	1	14353	1020	36	4		4	SHANK1	19	51219970	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1840993	51219970	7909013	141	76800										
ZNF577	0	genome.wustl.edu	37	chr19	52376202	52376202	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tatggtctctctccagtgtgAgtacgctgatgctgaatgag	12	8	2	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	52376202	52376202	A	C	SNP	ZNF577	ENST00000301399	human	ensembl	69_37n	-1	known	silent	c.1041	p.T347	0.958	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551	36	0	0	36	18	33.33	-	-	-	C	52376202	A	C	52376202	2	2	967	1	0	0	0	0	0	0	0	1	18105	291	11	5		5	ZNF577	19	52376202	Silent	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	1156232	52376202	6752781	142	76801										
ZNF813	0	genome.wustl.edu	37	chr19	53994508	53994508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gacctttagtcagacgtcatCccttacatgccatcgtagac	7	13	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	53994508	53994508	C	T	SNP	ZNF813	ENST00000396403	human	ensembl	69_37n	1	known	missense	c.1022	p.S341F	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346	50	0	0	45	29	39.19	-	-	-	T	53994508	C	T	53994508	3	4	967	1	0	0	0	0	1	0	0	0	18268	855	30	2	1032	2	ZNF813	19	53994508	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1618306	53994508	5134475	143	76802										
LILRB1	0	genome.wustl.edu	37	chr19	55147342	55147342	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gatgaggaataaatgaaccaCcccggtcccccaggctcccc	9	16	0	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	55147342	55147342	C	A	SNP	LILRB1	ENST00000462628	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	30	0	0	37	10	21.28	-	-	-	A	55147342	C	A	55147342	1	1	967	0	1	0	0	0	0	0	0	0	8845	522	18	4		4	LILRB1	19	55147342	RNA	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1152834	55147342	3981641	144	76803										
NLRP13	0	genome.wustl.edu	37	chr19	56423221	56423221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acttcaaagatacgacccaaCatcttctttgtgaagtcttc	5	11	4	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	19	56423221	56423221	C	T	SNP	NLRP13	ENST00000342929	human	ensembl	69_37n	-1	known	missense	c.1962	p.M654I	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	34	0	0	22	3	12	-	-	-	T	56423221	C	T	56423221	3	4	967	1	0	0	0	0	1	0	0	0	10547	478	17	4	1195	4	NLRP13	19	56423221	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1275879	56423221	2705762	145	76804										
ZNF335	0	genome.wustl.edu	37	chr20	44594384	44594384	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aagctgccggcctcggggctCatcctcagctggattatagt	12	12	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	20	44594384	44594384	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	69_37n	-1	known	missense	c.985	p.E329K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	45	0	0	65	9	12.16	-	-	-	T	44594384	C	T	44594384	3	4	967	1	0	0	0	0	1	0	0	0	17948	835	29	2	3131	2	ZNF335	20	44594384	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09		44594384	18431136	146	76805										
TSHZ2	0	genome.wustl.edu	37	chr20	51870687	51870687	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tatgacaccctagtcgagctGactgtgcacatgaatgaaac	9	10	0	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	20	51870687	51870687	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	1	known	silent	c.690	p.L230	0.995	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	27	0	0	26	12	31.58	-	-	-	A	51870687	G	A	51870687	2	1	967	1	0	0	0	0	0	0	0	1	16720	1277	45	2		2	TSHZ2	20	51870687	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	7276303	51870687	11154833	147	76806										
CDH26	0	genome.wustl.edu	37	chr20	58564030	58564030	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aatgaggagaggctcgtcttCtgtgagagaggaaagcttca	14	6	3	4			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	20	58564030	58564030	C	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	1	known	missense	c.1095	p.F365L	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	33	0	0	30	12	28.57	-	-	-	G	58564030	C	G	58564030	3	3	967	1	0	0	0	0	1	0	0	0	3139	912	32	2	1129	2	CDH26	20	58564030	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	6693343	58564030	4461490	148	76807										
MICAL3	0	genome.wustl.edu	37	chr22	18301523	18301523	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cagtctgtccttggtgtcacTttggctttggacagggagag	14	8	2	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	22	18301523	18301523	T	G	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.3904	p.S1302R	0.003	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	78	0	0	58	13	18.31	-	-	-	G	18301523	T	G	18301523	3	3	967	1	0	0	0	0	1	0	0	0	9642	1609	56	5	2132	5	MICAL3	22	18301523	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09		18301523	33003043	149	76808										
ZDHHC8	0	genome.wustl.edu	37	chr22	20128842	20128842	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tcagcagtgacctgcagaccCcgcgcccaggcagtgctggt	13	15	1	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	22	20128842	20128842	C	G	SNP	ZDHHC8	ENST00000405930	human	ensembl	69_37n	1	known	missense	c.997	p.P333A	0.865	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904	95	0	0	24	87	78.38	-	-	-	G	20128842	C	G	20128842	3	3	967	1	0	0	0	0	1	0	0	0	17717	623	22	4	1027	4	ZDHHC8	22	20128842	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1827319	20128842	31175724	150	76809										
SERPIND1	0	genome.wustl.edu	37	chr22	21134011	21134011	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gccaagttcgctttcaacctCtaccgagtgctgaaagacca	8	13	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	22	21134011	21134011	C	G	SNP	SERPIND1	ENST00000215727	human	ensembl	69_37n	1	known	silent	c.411	p.L137	0.119	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPIND1	HGNC	ENSG00000099937	27	0	0	26	7	21.21	-	-	-	G	21134011	C	G	21134011	2	3	967	1	0	0	0	0	0	0	0	1	14198	900	32	2		2	SERPIND1	22	21134011	Silent	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	1005169	21134011	30170555	151	76810										
GRAP2	0	genome.wustl.edu	37	chr22	40364072	40364072	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	cggggcaacagcctggaccgGaggtcccagggaggcccaca	16	14	0	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	22	40364072	40364072	G	C	SNP	GRAP2	ENST00000344138	human	ensembl	69_37n	1	known	silent	c.486	p.R162	0.832	NULL	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351	23	0	0	22	9	29.03	-	-	-	C	40364072	G	C	40364072	2	2	967	1	0	0	0	0	0	0	0	1	6805	1161	41	2		2	GRAP2	22	40364072	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	19230061	40364072	10940494	152	76811										
PHEX	0	genome.wustl.edu	37	chrX	22056654	22056654	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	aagccagaatgcatcgaagcGggtaagtcacagttttccat	10	9	1	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	22056654	22056654	G	C	SNP	PHEX	ENST00000379374	human	ensembl	69_37n	1	known	silent	c.186	p.A62	0.945	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	42	0	0	58	8	12.12	-	-	-	C	22056654	G	C	22056654	2	2	967	1	0	0	0	0	0	0	0	1	11893	1130	39	3		3	PHEX	23	22056654	Silent	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09		22056654	133213906	153	76812										
USP11	0	genome.wustl.edu	37	chrX	47104842	47104842	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gctgcaggagtgcattgagcTcttcaccactgtggagaccc	12	12	2	2			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	47104842	47104842	T	C	SNP	USP11	ENST00000218348	human	ensembl	69_37n	1	known	missense	c.2360	p.L787P	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	84	0	0	95	88	48.09	-	-	-	C	47104842	T	C	47104842	3	2	967	1	0	0	0	0	1	0	0	0	17139	1551	54	5	2426	5	USP11	23	47104842	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	25048188	47104842	108165718	154	76813										
TIMM17B	0	genome.wustl.edu	37	chrX	48751358	48751358	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	acagggtggaaggggctgggGccagggccaggggtcactca	20	9	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	48751358	48751358	G	T	SNP	TIMM17B	ENST00000466995	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TIMM17B	HGNC	ENSG00000126768	54	0	0	38	35	47.95	-	-	-	T	48751358	G	T	48751358	1	4	967	0	1	0	0	0	0	0	0	0	16004	1218	42	4		4	TIMM17B	23	48751358	RNA	SNP	G	TCGA-OL-A5RW-01A-11D-A28B-09	1646516	48751358	106519202	155	76814										
KCND1	0	genome.wustl.edu	37	chrX	48825988	48825988	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggctgtgtccatgcagaaaaAggcctgtgggaagcgttcgc	15	9	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	48825988	48825988	A	T	SNP	KCND1	ENST00000218176	human	ensembl	69_37n	-1	known	missense	c.691	p.F231I	1.000	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057	36	0	0	21	21	50	-	-	-	T	48825988	A	T	48825988	3	4	967	1	0	0	0	0	1	0	0	0	8072	72	3	5	1276	5	KCND1	23	48825988	Missense_Mutation	SNP	A	TCGA-OL-A5RW-01A-11D-A28B-09	74630	48825988	106444572	156	76815										
MED12	0	genome.wustl.edu	37	chrX	70355014	70355014	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tgccactgcccaagcagaccCgagatgtcatcacgtgtgag	11	13	2	3			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	70355014	70355014	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	1	known	nonsense	c.4936	p.R1646*	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	38	0	0	36	26	41.94	-	-	-	T	70355014	C	T	70355014	4	4	967	1	0	0	0	0	0	1	0	0	9499	644	23	1	5078	1	MED12	23	70355014	Nonsense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	21529026	70355014	84915546	157	76816										
ACTRT1	0	genome.wustl.edu	37	chrX	127185327	127185327	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	tttattctggatgtcagtgtCacacttcatgatgctgctgg	10	8	4	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	127185327	127185327	C	G	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	missense	c.859	p.D287H	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	59	0	0	62	42	40.38	-	-	-	G	127185327	C	G	127185327	3	3	967	1	0	0	0	0	1	0	0	0	218	826	29	2	275	2	ACTRT1	23	127185327	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	56830313	127185327	28085233	158	76817										
PLXNB3	0	genome.wustl.edu	37	chrX	153043682	153043682	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	ggggcaccttcacctccgagCtcatgcctagcgcctcccct	9	19	2	0			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	153043682	153043682	C	A	SNP	PLXNB3	ENST00000448847	human	ensembl	69_37n	1	known	missense	c.452	p.A151D	0.002	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLXNB3	HGNC	ENSG00000198753	72	0	0	74	112	60.22	-	-	-	A	153043682	C	A	153043682	3	1	967	1	0	0	0	0	1	0	0	0	12199	812	28	4		4	PLXNB3	23	153043682	Missense_Mutation	SNP	C	TCGA-OL-A5RW-01A-11D-A28B-09	25858355	153043682	2226878	159	76818										
L1CAM	0	genome.wustl.edu	37	chrX	153134351	153134351	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.29559748427673	47	2.83614217872638e-12	3.13867924528302	3.82947331705616	2.2022695035461	0.00020163581243633	0.00616249451758534	32	gcacagaaggtaggcagtgcTgccctggacagccatgtacg	14	11	0	1			TCGA-OL-A5RW-01A-11D-A28B-09	TCGA-OL-A5RW-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8e4c566c-99f9-4ca5-a8df-c2535130630a	5b3549a7-5b4e-4942-a53d-471d76c3341a	X	153134351	153134351	T	G	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	missense	c.1330	p.S444R	0.726	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	70	0	0	98	72	42.35	-	-	-	G	153134351	T	G	153134351	3	3	967	1	0	0	0	0	1	0	0	0	8642	1580	55	5	2521	5	L1CAM	23	153134351	Missense_Mutation	SNP	T	TCGA-OL-A5RW-01A-11D-A28B-09	90669	153134351	2136209	160	76819										
OLFML2B	0	genome.wustl.edu	37	chr1	161954651	161954651	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	ggtgttgccgtagtaatagtTggttacgtaaatccgctcat	11	7	1	0			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	1	161954651	161954651	T	C	SNP	OLFML2B	ENST00000294794	human	ensembl	69_37n	-1	known	missense	c.1594	p.N532D	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	69	0	0	131	28	17.61	-	-	-	C	161954651	T	C	161954651	3	2	968	1	0	0	0	0	1	0	0	0	10931	1812	63	5	666	5	OLFML2B	1	161954651	Missense_Mutation	SNP	T	TCGA-OL-A5RX-01A-11D-A28B-09		161954651	87295970	1	76820										
CACNA1E	0	genome.wustl.edu	37	chr1	181767845	181767845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tcggctcagccccacccctgCggcatagctggcagatgccc	11	18	1	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	1	181767845	181767845	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	1	known	missense	c.6817	p.R2273W	0.998	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	49	0	0	50	12	19.35	-	-	-	T	181767845	C	T	181767845	3	4	968	1	0	0	0	0	1	0	0	0	2567	759	27	1	6874	1	CACNA1E	1	181767845	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09	19813194	181767845	67482776	2	76821										
KCTD3	0	genome.wustl.edu	37	chr1	215793916	215793916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	caaagactactccatctcctCggcataaaaaaagtgattct	5	11	2	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	1	215793916	215793916	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	1	known	missense	c.2404	p.R802W	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	14	0	0	19	12	38.71	-	-	-	T	215793916	C	T	215793916	3	4	968	1	0	0	0	0	1	0	0	0	8164	875	31	1	2474	1	KCTD3	1	215793916	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09	34026071	215793916	33456705	3	76822										
OR2T33	0	genome.wustl.edu	37	chr1	248436527	248436527	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	ttaacacacagcagatgtacAtggcgttttcgaagactgaa	9	8	0	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	1	248436527	248436527	A	C	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.590	p.M197R	0.018	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	28	0	0	72	14	16.28	-	-	-	C	248436527	A	C	248436527	3	2	968	1	0	0	0	0	1	0	0	0	11097	217	8	5	375	5	OR2T33	1	248436527	Missense_Mutation	SNP	A	TCGA-OL-A5RX-01A-11D-A28B-09	32642611	248436527	814094	4	76823										
CD8B	0	genome.wustl.edu	37	chr2	87085532	87085532	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tgctggaggactgagttgccAtggagaactaggaaaagcca	14	7	0	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	2	87085532	87085532	A	G	SNP	CD8B	ENST00000331469	human	ensembl	69_37n	-1	known	silent	c.51	p.H17	0.000	pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD8B	HGNC	ENSG00000172116	60	0	0	57	15	20.83	-	-	-	G	87085532	A	G	87085532	2	3	968	1	0	0	0	0	0	0	0	1	3074	214	8	5		5	CD8B	2	87085532	Silent	SNP	A	TCGA-OL-A5RX-01A-11D-A28B-09		87085532	156113841	5	76824										
MFF	0	genome.wustl.edu	37	chr2	228211954	228211954	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	gtaaacagtgtgacaccatcGccacaacaggctcgggtctg	11	12	1	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	2	228211954	228211954	G	A	SNP	MFF	ENST00000353339	human	ensembl	69_37n	1	known	silent	c.606	p.S202	1.000	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958	60	0	0	41	10	19.61	-	-	-	A	228211954	G	A	228211954	2	1	968	1	0	0	0	0	0	0	0	1	9590	1074	38	1		1	MFF	2	228211954	Silent	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	141126422	228211954	14987419	6	76825										
PIK3CA	0	genome.wustl.edu	37	chr3	178922328	178922328	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tatctaccatggaggagaacCcttatgtgacaatgtgaaca	9	8	1	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	3	178922328	178922328	C	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1097	p.P366R	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	38	0	0	38	10	20.83	-	-	-	G	178922328	C	G	178922328	3	3	968	1	0	0	0	0	1	0	0	0	11987	623	22	4	1115	4	PIK3CA	3	178922328	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		178922328	19100102	7	76826										
PIK3CA	0	genome.wustl.edu	37	chr3	178948044	178948044	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	agattttggacactttttggAtcacaagaagaaaaaatttg	8	4	1	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	3	178948044	178948044	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.2816	p.D939G	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	31	0	0	30	7	18.92	-	-	-	G	178948044	A	G	178948044	3	3	968	1	0	0	0	0	1	0	0	0	11987	333	12	5	2890	5	PIK3CA	3	178948044	Missense_Mutation	SNP	A	TCGA-OL-A5RX-01A-11D-A28B-09	25716	178948044	19074386	8	76827										
ANKHD1	0	genome.wustl.edu	37	chr5	139908991	139908991	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	taccaaatgcaactattcacCaggatccccagtctattttt	4	12	2	0			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	5	139908991	139908991	C	T	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	nonsense	c.6460	p.Q2154*	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	38	0	0	38	9	19.15	-	-	-	T	139908991	C	T	139908991	4	4	968	1	0	0	0	0	0	1	0	0	628	595	21	4	6680	4	ANKHD1	5	139908991	Nonsense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		139908991	41006269	9	76828										
UTRN	0	genome.wustl.edu	37	chr6	144843127	144843127	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tttttgtaggcaatccctatTcaacagaggaaaatgggtca	9	7	2	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	6	144843127	144843127	T	G	SNP	UTRN	ENST00000367545	human	ensembl	69_37n	1	known	missense	c.5553	p.I1851M	0.147	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	15	0	0	18	7	26.92	-	-	-	G	144843127	T	G	144843127	3	3	968	1	0	0	0	0	1	0	0	0	17200	1771	62	5	5707	5	UTRN	6	144843127	Missense_Mutation	SNP	T	TCGA-OL-A5RX-01A-11D-A28B-09		144843127	26271940	10	76829										
GUSB	0	genome.wustl.edu	37	chr7	65440012	65440012	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	ggatccccacagggagtgtgTagaagtcagacacaggcccc	13	12	1	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	7	65440012	65440012	T	C	SNP	GUSB	ENST00000304895	human	ensembl	69_37n	-1	known	missense	c.959	p.Y320C	1.000	pfam_Glyco_hydro_2_Ig-like,superfamily_Glyco_hydro_2_Ig-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	25	0	0	32	6	15.79	-	-	-	C	65440012	T	C	65440012	3	2	968	1	0	0	0	0	1	0	0	0	6953	1638	57	5	1024	5	GUSB	7	65440012	Missense_Mutation	SNP	T	TCGA-OL-A5RX-01A-11D-A28B-09		65440012	93698651	11	76830										
HEPACAM2	0	genome.wustl.edu	37	chr7	92848661	92848661	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	catatgatctggatgtctgaTgctggagtgtggaagccata	13	6	2	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	7	92848661	92848661	T	A	SNP	HEPACAM2	ENST00000394468	human	ensembl	69_37n	-1	known	silent	c.183	p.A61	0.681	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM2	HGNC	ENSG00000188175	85	0	0	87	18	17.14	-	-	-	A	92848661	T	A	92848661	2	1	968	1	0	0	0	0	0	0	0	1	7104	1451	51	5		5	HEPACAM2	7	92848661	Silent	SNP	T	TCGA-OL-A5RX-01A-11D-A28B-09	27408649	92848661	66290002	12	76831										
MLL3	0	genome.wustl.edu	37	chr7	151896463	151896463	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	gtttgttttatataaaagctGagctccatcttctgacagat	7	7	2	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	7	151896463	151896463	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.4174	p.Q1392*	0.599	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	23	0	0	34	18	34.62	-	-	-	A	151896463	G	A	151896463	4	1	968	1	0	0	0	0	0	1	0	0	9693	1299	45	2	10693	2	MLL3	7	151896463	Nonsense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	59047802	151896463	7242200	13	76832										
CSMD1	0	genome.wustl.edu	37	chr8	3008925	3008925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	acattttcacttaccatagcCgatgggtaatgagatcctcc	7	11	1	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	8	3008925	3008925	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6028	p.G2010S	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	61	0	0	60	16	21.05	-	-	-	T	3008925	C	T	3008925	3	4	968	1	0	0	0	0	1	0	0	0	3976	652	23	1	4793	1	CSMD1	8	3008925	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		3008925	143355097	14	76833										
ACTL7A	0	genome.wustl.edu	37	chr9	111625797	111625797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tgcctgaaagagacagtgccGtgtggaccggtggctccatc	14	11	0	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	9	111625797	111625797	G	A	SNP	ACTL7A	ENST00000333999	human	ensembl	69_37n	1	known	missense	c.1195	p.V399M	0.998	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL7A	HGNC	ENSG00000187003	39	0	0	30	5	14.29	-	-	-	A	111625797	G	A	111625797	3	1	968	1	0	0	0	0	1	0	0	0	200	1145	40	1	1197	1	ACTL7A	9	111625797	Missense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09		111625797	29587634	15	76834										
UAP1L1	0	genome.wustl.edu	37	chr9	139977163	139977163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	gaagaccaggccagggagccGcagctgcaggagtcctgacc	15	13	0	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	9	139977163	139977163	G	A	SNP	UAP1L1	ENST00000409858	human	ensembl	69_37n	1	known	silent	c.1506	p.P502	0.000	NULL	pfam_UDPGP_trans	-	no_errors	UAP1L1	HGNC	ENSG00000197355	62	0	0	58	21	26.58	-	-	-	A	139977163	G	A	139977163	2	1	968	1	0	0	0	0	0	0	0	1	16923	1074	38	1		1	UAP1L1	9	139977163	Silent	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	28351366	139977163	1236268	16	76835										
GATA3	0	genome.wustl.edu	37	chr10	8111550	8111550	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	atgcctgtgggctctactacAagcttcacaatgtaagtgga	10	9	2	0			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	10	8111550	8111550	A	T	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	nonsense	c.1039	p.K347*	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	65	0	0	57	12	17.39	-	-	-	T	8111550	A	T	8111550	4	4	968	1	0	0	0	0	0	1	0	0	6305	131	5	5	1053	5	GATA3	10	8111550	Nonsense_Mutation	SNP	A	TCGA-OL-A5RX-01A-11D-A28B-09		8111550	127423197	17	76836										
NRXN2	0	genome.wustl.edu	37	chr11	64419603	64419603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	gtcattgagcttgtgccccgCaaacagcgtttcggggcctt	12	12	1	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	11	64419603	64419603	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	missense	c.2440	p.A814T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	16	0	0	21	6	22.22	-	-	-	T	64419603	C	T	64419603	3	4	968	1	0	0	0	0	1	0	0	0	10739	710	25	4	3011	4	NRXN2	11	64419603	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		64419603	70586913	18	76837										
MAP3K9	0	genome.wustl.edu	37	chr14	71206700	71206700	+	Frame_Shift_Del	DEL	A	A	-													0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	accagtcggtggctggacagAgcaggggacaggtgcccctg							TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	14	71206700	71206700	A	-	DEL	MAP3K9	ENST00000553414	human	ensembl	69_37n	-1	putative	frame_shift_del	c.831	p.L278fs	0.995	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	42	0	0	46	14	22.95	-	-	-	-	71206700	A	-	71206700	7	5	968	1	0	1	0	1	0	0	0	0	9328	319	11	0		0	MAP3K9	14	71206700	Frame_Shift_Del	DEL	A	TCGA-OL-A5RX-01A-11D-A28B-09		71206700	36142840	19	76838										
TSHR	0	genome.wustl.edu	37	chr14	81609335	81609335	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	agtatgcagagcttgcgccaGagaaaatctgtgaatgcctt	11	8	1	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	14	81609335	81609335	G	C	SNP	TSHR	ENST00000298171	human	ensembl	69_37n	1	known	missense	c.933	p.Q311H	0.981	prints_TSH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_TSH_rcpt,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	19	0	0	12	6	33.33	-	-	-	C	81609335	G	C	81609335	3	2	968	1	0	0	0	0	1	0	0	0	16718	933	33	2	1108	2	TSHR	14	81609335	Missense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	10402635	81609335	25740205	20	76839										
KCTD5	0	genome.wustl.edu	37	chr16	2745959	2745959	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	gaaacaggcgcctatttaatCgacagagaccccacctactt	7	13	0	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	16	2745959	2745959	C	T	SNP	KCTD5	ENST00000301738	human	ensembl	69_37n	1	known	silent	c.276	p.I92	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD5	HGNC	ENSG00000167977	12	0	0	14	12	46.15	-	-	-	T	2745959	C	T	2745959	2	4	968	1	0	0	0	0	0	0	0	1	8166	874	31	1		1	KCTD5	16	2745959	Silent	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		2745959	87608794	21	76840										
DNAH9	0	genome.wustl.edu	37	chr17	11603102	11603102	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tggccaagatgcgattccagCtagatgccagtggggaacca	13	10	0	2			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	17	11603102	11603102	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	1	known	missense	c.4927	p.L1643I	0.073	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	73	0	0	72	13	15.29	-	-	-	A	11603102	C	A	11603102	3	1	968	1	0	0	0	0	1	0	0	0	4643	796	28	4	5017	4	DNAH9	17	11603102	Missense_Mutation	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		11603102	69592108	22	76841										
NCOR1	0	genome.wustl.edu	37	chr17	15968898	15968898	+	Frame_Shift_Del	DEL	T	T	-													0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	ttgcatctgttgtgaggtaaTgtaatcatttaagattgtct							TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	17	15968898	15968898	T	-	DEL	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_del	c.4852	p.I1618fs	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	90	0	0	86	10	10.31	-	-	-	-	15968898	T	-	15968898	7	5	968	1	0	1	0	1	0	0	0	0	10307	1464	51	0	2526	0	NCOR1	17	15968898	Frame_Shift_Del	DEL	T	TCGA-OL-A5RX-01A-11D-A28B-09	4365796	15968898	65226312	23	76842										
NPEPPS	0	genome.wustl.edu	37	chr17	45663749	45663749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	aggtgccatggagaactgggGccttgttacttataggtatg	14	6	0	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	17	45663749	45663749	G	A	SNP	NPEPPS	ENST00000322157	human	ensembl	69_37n	1	known	missense	c.965	p.G322D	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279	40	0	0	48	6	11.11	-	-	-	A	45663749	G	A	45663749	3	1	968	1	0	0	0	0	1	0	0	0	10647	1203	42	4	995	4	NPEPPS	17	45663749	Missense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	29694851	45663749	35531461	24	76843										
LILRA5	0	genome.wustl.edu	37	chr19	54823200	54823200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	agggctgtagtagtaacagcGgtatctccctgcatggtgct	13	9	1	0			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	19	54823200	54823200	G	A	SNP	LILRA5	ENST00000301219	human	ensembl	69_37n	-1	known	missense	c.343	p.R115C	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116	49	0	0	38	18	32.14	-	-	-	A	54823200	G	A	54823200	3	1	968	1	0	0	0	0	1	0	0	0	8843	1116	39	1	658	1	LILRA5	19	54823200	Missense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09		54823200	4305783	25	76844										
ACTR5	0	genome.wustl.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	20	37377139	37377139	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	69_37n	1	known	silent	c.18	p.F6	0.273	NULL	pfam_Actin-like,smart_Actin-like	-	no_errors	ACTR5	HGNC	ENSG00000101442	11	0	0	4	4	50	-	-	-	T	37377139	C	T	37377139	2	4	968	1	0	0	0	0	0	0	0	1	215	854	30	2		2	ACTR5	20	37377139	Silent	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09		37377139	25648381	26	76845										
PFDN4	0	genome.wustl.edu	37	chr20	52835691	52835691	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	tgaagctgatgaaagttaaaCattttataatacttttttta	5	3	0	3			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	20	52835691	52835691	C	T	SNP	PFDN4	ENST00000487129	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.202	-	-	-	no_errors	PFDN4	HGNC	ENSG00000101132	45	0	0	54	9	14.29	-	-	-	T	52835691	C	T	52835691	1	4	968	0	1	0	0	0	0	0	0	0	11831	493	17	4		4	PFDN4	20	52835691	RNA	SNP	C	TCGA-OL-A5RX-01A-11D-A28B-09	15458552	52835691	10189829	27	76846										
VSIG4	0	genome.wustl.edu	37	chrX	65241995	65241995	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	agcggctccagtgttggtagGcggacactttgggctatcca	14	10	0	0			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	X	65241995	65241995	G	A	SNP	VSIG4	ENST00000427538	human	ensembl	69_37n	-1	known	missense	c.755	p.A252V	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VSIG4	HGNC	ENSG00000155659	48	0	0	66	13	16.46	-	-	-	A	65241995	G	A	65241995	3	1	968	1	0	0	0	0	1	0	0	0	17322	1218	42	4		4	VSIG4	23	65241995	Missense_Mutation	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09		65241995	90028565	28	76847										
MCF2	0	genome.wustl.edu	37	chrX	138689712	138689712	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0689655172413793	2	0.910881535533351	0.939236111111111	4.2265625	0.5283203125	1	1	0	ataggctataggttggccagGcctaaatcctggacttctga	11	9	1	1			TCGA-OL-A5RX-01A-11D-A28B-09	TCGA-OL-A5RX-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	122e2093-6f49-473d-a23b-aa7913bfbc9f	e8ded17f-7468-4657-aabd-21f759487ce5	X	138689712	138689712	G	A	SNP	MCF2	ENST00000483690	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCF2	HGNC	ENSG00000101977	12	0	0	10	5	33.33	-	-	-	A	138689712	G	A	138689712	1	1	968	0	1	0	0	0	0	0	0	0	9449	1218	42	4		4	MCF2	23	138689712	RNA	SNP	G	TCGA-OL-A5RX-01A-11D-A28B-09	73447717	138689712	16580848	29	76848										
CLCNKA	0	genome.wustl.edu	37	chr1	16360144	16360144	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aacctgacaaatccgccagcTccaaagtgagccggcccagc	9	16	0	2			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	16360144	16360144	T	C	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	1	known	silent	c.2055	p.A685	0.903	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	51	0	0	34	4	10.53	-	-	-	C	16360144	T	C	16360144	2	2	969	1	0	0	0	0	0	0	0	1	3499	1538	54	5		5	CLCNKA	1	16360144	Silent	SNP	T	TCGA-OL-A5RY-01A-21D-A28B-09		16360144	232890477	1	76849										
PHC2	0	genome.wustl.edu	37	chr1	33789638	33789638	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcttaatgctctttgtgaaCcaggagggcggtcaggggaa	14	7	3	1			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	33789638	33789638	C	T	SNP	PHC2	ENST00000485928	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.632	-	-	-	no_errors	PHC2	HGNC	ENSG00000134686	8	0	0	4	6	60	-	-	-	T	33789638	C	T	33789638	1	4	969	0	1	0	0	0	0	0	0	0	11891	522	18	4		4	PHC2	1	33789638	RNA	SNP	C	TCGA-OL-A5RY-01A-21D-A28B-09	17429494	33789638	215460983	2	76850										
TCHH	0	genome.wustl.edu	37	chr1	152083754	152083754	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttcctgctgctcgcgccttaGttgctgctggcgcctctcct	10	16	1	0			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	152083754	152083754	G	C	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.1939	p.L647V	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	128	0	0	113	14	11.02	-	-	-	C	152083754	G	C	152083754	3	2	969	1	0	0	0	0	1	0	0	0	15795	1020	36	4	3896	4	TCHH	1	152083754	Missense_Mutation	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09	118294116	152083754	97166867	3	76851										
ZDHHC11	0	genome.wustl.edu	37	chr5	833915	833915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagatgagcccagggcgccaGctccttgctgtggggcaaaa	14	12	0	2			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	5	833915	833915	G	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	missense	c.908	p.A303D	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	34	0	0	20	8	28.57	-	-	-	T	833915	G	T	833915	3	4	969	1	0	0	0	0	1	0	0	0	17697	971	34	4	354	4	ZDHHC11	5	833915	Missense_Mutation	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09		833915	180081345	4	76852										
OXCT1	0	genome.wustl.edu	37	chr5	41731834	41731834	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtacaaatatccatatttcaAtttgcgatctgctgcattgg	7	8	2	0			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	5	41731834	41731834	A	C	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1560	p.N520K	0.997	pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	39	0	0	27	4	12.9	-	-	-	C	41731834	A	C	41731834	3	2	969	1	0	0	0	0	1	0	0	0	11402	98	4	5	6	5	OXCT1	5	41731834	Missense_Mutation	SNP	A	TCGA-OL-A5RY-01A-21D-A28B-09	40897919	41731834	139183426	5	76853										
HIST1H1A	0	genome.wustl.edu	37	chr6	26017768	26017768	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggccgccagcgcctttttaaGagctgccaacgacacaccac	9	16	0	1			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	6	26017768	26017768	G	T	SNP	HIST1H1A	ENST00000244573	human	ensembl	69_37n	-1	known	missense	c.193	p.L65I	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610	94	0	0	63	7	10	-	-	-	T	26017768	G	T	26017768	3	4	969	1	0	0	0	0	1	0	0	0	7173	942	33	2	458	2	HIST1H1A	6	26017768	Missense_Mutation	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09		26017768	145097299	6	76854										
TSPYL1	0	genome.wustl.edu	37	chr6	116600681	116600681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcggctgccaggccttcggCgggaggctggccctcttcct	15	15	1	0			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	6	116600681	116600681	C	T	SNP	TSPYL1	ENST00000368608	human	ensembl	69_37n	-1	known	missense	c.313	p.A105T	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241	59	0	0	36	5	12.2	-	-	-	T	116600681	C	T	116600681	3	4	969	1	0	0	0	0	1	0	0	0	16755	768	27	1	1004	1	TSPYL1	6	116600681	Missense_Mutation	SNP	C	TCGA-OL-A5RY-01A-21D-A28B-09	90582913	116600681	54514386	7	76855										
PTPRZ1	0	genome.wustl.edu	37	chr7	121513368	121513369	+	RNA	DEL	TG	TG	-													0	0	1	0	0	0	1	1	0	tctctctctgtctctgtctcTgtctctctctctctcacaca							TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	7	121513368	121513369	TG	-	DEL	PTPRZ1	ENST00000471837	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	14	0	0	3	2	40	-	-	-	-	121513369	TG	-	121513368	6	5	969	0	1	1	0	1	0	0	0	0	12897	1595	55	0		0	PTPRZ1	7	121513368	RNA	DEL	TG	TCGA-OL-A5RY-01A-21D-A28B-09		121513368	37625295	8	76856										
WHSC1L1	0	genome.wustl.edu	37	chr8	38174774	38174774	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctacaagtttttcactgaatGtttcctgacatctataaatg	5	8	2	2			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	8	38174774	38174774	G	T	SNP	WHSC1L1	ENST00000525081	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	32	0	0	18	3	14.29	-	-	-	T	38174774	G	T	38174774	1	4	969	0	1	0	0	0	0	0	0	0	17460	1392	48	4		4	WHSC1L1	8	38174774	RNA	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09		38174774	108189248	9	76857										
TP53	0	genome.wustl.edu	37	chr17	7578393	7578393	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgctatctgagcagcgctcAtggtgggggcagcgcctcac	14	13	3	1			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	17	7578393	7578393	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.537	p.H179Q	0.699	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	33	0	0	14	3	17.65	-	-	-	T	7578393	A	T	7578393	3	4	969	1	0	0	0	0	1	0	0	0	16477	214	8	5	761	5	TP53	17	7578393	Missense_Mutation	SNP	A	TCGA-OL-A5RY-01A-21D-A28B-09		7578393	73616817	10	76858										
PGS1	0	genome.wustl.edu	37	chr17	76395617	76395617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acaacagcgtcatcttgagcGggtgagtgcttcccaccgtc	11	13	2	2			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	17	76395617	76395617	G	T	SNP	PGS1	ENST00000262764	human	ensembl	69_37n	1	known	missense	c.700	p.G234C	1.000	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157	45	0	0	35	4	10.26	-	-	-	T	76395617	G	T	76395617	3	4	969	1	0	0	0	0	1	0	0	0	11882	1130	39	3	718	3	PGS1	17	76395617	Missense_Mutation	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09	68817224	76395617	4799593	11	76859										
TIAM1	0	genome.wustl.edu	37	chr21	32624173	32624173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgccggccttgcgcaccgtGccctgtgcggcggtcagcag	16	16	1	0			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	21	32624173	32624173	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	silent	c.1296	p.G432	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	62	0	0	48	6	11.11	-	-	-	A	32624173	G	A	32624173	2	1	969	1	0	0	0	0	0	0	0	1	15985	1306	46	4		4	TIAM1	21	32624173	Silent	SNP	G	TCGA-OL-A5RY-01A-21D-A28B-09		32624173	15505722	12	76860										
KCNAB2	0	genome.wustl.edu	37	chr1	6142261	6142261	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttttctcgtttcagatggcaGagcagctcatgaccttggcc	10	11	3	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	6142261	6142261	G	T	SNP	KCNAB2	ENST00000378083	human	ensembl	69_37n	1	known	nonsense	c.307	p.E103*	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB2	HGNC	ENSG00000069424	85	0	0	25	4	13.79	-	-	-	T	6142261	G	T	6142261	4	4	970	1	0	0	0	0	0	1	0	0	8064	943	33	2	226	2	KCNAB2	1	6142261	Nonsense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		6142261	243108360	1	76861										
GCLM	0	genome.wustl.edu	37	chr1	94363437	94363437	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgatgatgaagagtttgattCtacaatgaacagttttgctg	10	4	1	6			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	94363437	94363437	C	G	SNP	GCLM	ENST00000370238	human	ensembl	69_37n	-1	known	missense	c.295	p.E99Q	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	GCLM	HGNC	ENSG00000023909	38	0	0	20	293	93.61	-	-	-	G	94363437	C	G	94363437	3	3	970	1	0	0	0	0	1	0	0	0	6346	922	32	2	545	2	GCLM	1	94363437	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	88221176	94363437	154887184	2	76862										
ABCA4	0	genome.wustl.edu	37	chr1	94481381	94481381	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aacccgatgaagatgcccacCaccagcccagcactcacgga	8	17	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	94481381	94481381	C	G	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	silent	c.5226	p.V1742	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	51	0	0	47	31	39.74	-	-	-	G	94481381	C	G	94481381	2	3	970	1	0	0	0	0	0	0	0	1	34	581	21	4		4	ABCA4	1	94481381	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	117944	94481381	154769240	3	76863										
TXNIP	0	genome.wustl.edu	37	chr1	145441247	145441247	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aagaaaagaagcagctttacCtacttgtttctttttgtctc	6	8	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	145441247	145441247	C	G	SNP	TXNIP	ENST00000475171	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	TXNIP	HGNC	ENSG00000117289	83	0	0	60	10	14.29	-	-	-	G	145441247	C	G	145441247	1	3	970	0	1	0	0	0	0	0	0	0	16900	696	24	4		4	TXNIP	1	145441247	RNA	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	50959866	145441247	103809374	4	76864										
F5	0	genome.wustl.edu	37	chr1	169494107	169494107	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aagccttgatctgtgaatcaGatatgataccagtgcttagt	9	7	2	4			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	169494107	169494107	G	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.5771	p.S1924Y	0.984	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	44	0	0	31	8	20.51	-	-	-	T	169494107	G	T	169494107	3	4	970	1	0	0	0	0	1	0	0	0	5385	942	33	2	946	2	F5	1	169494107	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	24052860	169494107	79756514	5	76865										
CRB1	0	genome.wustl.edu	37	chr1	197313516	197313516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tttctgcgactgtgcccctgGattcctgggggatcactgtg	13	11	2	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	197313516	197313516	G	T	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	1	known	missense	c.758	p.G253V	1.000	pfam_EGF-like_dom,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	134	0	0	99	24	19.51	-	-	-	T	197313516	G	T	197313516	3	4	970	1	0	0	0	0	1	0	0	0	3878	1174	41	2	768	2	CRB1	1	197313516	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	27819409	197313516	51937105	6	76866										
NFASC	0	genome.wustl.edu	37	chr1	204950942	204950942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ccagcccatgaatgccacctCggcctttggccccaacctgc	8	19	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	1	204950942	204950942	C	T	SNP	NFASC	ENST00000367172	human	ensembl	69_37n	1	known	missense	c.2264	p.S755L	0.827	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NFASC	HGNC	ENSG00000163531	51	0	0	31	6	16.22	-	-	-	T	204950942	C	T	204950942	3	4	970	1	0	0	0	0	1	0	0	0	10431	893	31	1	2422	1	NFASC	1	204950942	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	7637426	204950942	44299679	7	76867										
ITSN2	0	genome.wustl.edu	37	chr2	24432862	24432862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tcccactgtgtaagagcttcCggggccccaggcagttggtg	14	12	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	2	24432862	24432862	C	T	SNP	ITSN2	ENST00000355123	human	ensembl	69_37n	-1	known	missense	c.4298	p.R1433Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_Ca-dep,superfamily_DH-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399	77	0	0	69	14	16.87	-	-	-	T	24432862	C	T	24432862	3	4	970	1	0	0	0	0	1	0	0	0	7981	652	23	1	819	1	ITSN2	2	24432862	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		24432862	218766511	8	76868										
CLIP4	0	genome.wustl.edu	37	chr2	29368177	29368178	+	Frame_Shift_Ins	INS	-	-	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gaactggatgaaccagaaggINSaaaaaataatggaagtgttg							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	2	29368177	29368178	-	A	INS	CLIP4	ENST00000402240	human	ensembl	69_37n	1	known	frame_shift_ins	c.965_966	p.N324fs	1.000:0.863	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295	88	0	0	76	13	14.61	-	-	-	A	29368178	-	A	29368177	7	5	970	1	0	1	1	0	0	0	0	0	3565	1174	41	0	991	0	CLIP4	2	29368177	Frame_Shift_Ins	INS	-	TCGA-OL-A5RZ-01A-11D-A28B-09	4935315	29368177	213831196	9	76869										
NCKAP5	0	genome.wustl.edu	37	chr2	133540920	133540920	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tcctgagcagctggggagacTtcatgagcactttgagtccc	12	11	1	4			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	2	133540920	133540920	T	A	SNP	NCKAP5	ENST00000317721	human	ensembl	69_37n	-1	known	missense	c.3464	p.K1155M	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	77	0	0	64	24	27.27	-	-	-	A	133540920	T	A	133540920	3	1	970	1	0	0	0	0	1	0	0	0	10295	1609	56	5	2293	5	NCKAP5	2	133540920	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	104172743	133540920	109658453	10	76870										
MPP4	0	genome.wustl.edu	37	chr2	202510093	202510093	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	caaactgagtttccattcttTgggctaaattttccatctct	5	10	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	2	202510093	202510093	T	A	SNP	MPP4	ENST00000359962	human	ensembl	69_37n	-1	known	missense	c.1754	p.Q585L	0.997	pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP4	HGNC	ENSG00000082126	42	0	0	38	14	26.92	-	-	-	A	202510093	T	A	202510093	3	1	970	1	0	0	0	0	1	0	0	0	9808	1812	63	5	163	5	MPP4	2	202510093	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	68969173	202510093	40689280	11	76871										
ECEL1	0	genome.wustl.edu	37	chr2	233347316	233347316	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gcgcctgtggggggagcagcCacctgtggagggatgctggg	21	9	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	2	233347316	233347316	C	A	SNP	ECEL1	ENST00000304546	human	ensembl	69_37n	-1	known	missense	c.1688	p.W563L	1.000	prints_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	32	0	0	30	15	33.33	-	-	-	A	233347316	C	A	233347316	3	1	970	1	0	0	0	0	1	0	0	0	4926	595	21	4	671	4	ECEL1	2	233347316	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	30837223	233347316	9852057	12	76872										
TRANK1	0	genome.wustl.edu	37	chr3	36872500	36872500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	atccatacactttgctcgatGtcctgcaccaccagcttgcc	6	16	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	3	36872500	36872500	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	silent	c.8442	p.D2814	0.971	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	39	0	0	27	7	20.59	-	-	-	A	36872500	G	A	36872500	2	1	970	1	0	0	0	0	0	0	0	1	16550	1368	48	4		4	TRANK1	3	36872500	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		36872500	161149930	13	76873										
SLMAP	0	genome.wustl.edu	37	chr3	57846447	57846447	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	atcaaacagaagatagtttaCgaaaggaacttatagcatta	7	5	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	3	57846447	57846447	C	T	SNP	SLMAP	ENST00000428312	human	ensembl	69_37n	1	known	nonsense	c.709	p.R237*	1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	15	0	0	5	13	72.22	-	-	-	T	57846447	C	T	57846447	4	4	970	1	0	0	0	0	0	1	0	0	14838	528	19	1	739	1	SLMAP	3	57846447	Nonsense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	20973947	57846447	140175983	14	76874										
CASR	0	genome.wustl.edu	37	chr3	121976050	121976050	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gatatttgacacttgcaacaCcgtttctaaggccttggaag	9	9	1	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	3	121976050	121976050	C	G	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.308	p.T103S	0.999	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	38	0	0	28	6	17.65	-	-	-	G	121976050	C	G	121976050	3	3	970	1	0	0	0	0	1	0	0	0	2707	507	18	4	314	4	CASR	3	121976050	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	64129603	121976050	76046380	15	76875										
STAG1	0	genome.wustl.edu	37	chr3	136221598	136221598	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gaggtttaaggcaacattcaCcagagcagtcatgagcttca	10	9	3	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	3	136221598	136221598	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.700	p.V234L	1.000	pfam_STAG,superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	40	0	0	38	10	20.83	-	-	-	G	136221598	C	G	136221598	3	3	970	1	0	0	0	0	1	0	0	0	15333	507	18	4	3184	4	STAG1	3	136221598	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	14245548	136221598	61800832	16	76876										
LRRC66	0	genome.wustl.edu	37	chr4	52861808	52861808	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gcgtgtgggtgtggctgtgtCacccagaaaggggtctggtt	18	7	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	4	52861808	52861808	C	A	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	silent	c.1380	p.V460	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	123	0	0	103	22	17.6	-	-	-	A	52861808	C	A	52861808	2	1	970	1	0	0	0	0	0	0	0	1	9084	813	29	2		2	LRRC66	4	52861808	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		52861808	138292468	17	76877										
LRRC66	0	genome.wustl.edu	37	chr4	52883476	52883476	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	taaatatgcaaaagggcttaAggttatttttgatatgagat	9	2	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	4	52883476	52883476	A	C	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	missense	c.304	p.L102V	0.006	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	41	0	0	37	6	13.95	-	-	-	C	52883476	A	C	52883476	3	2	970	1	0	0	0	0	1	0	0	0	9084	69	3	5	2354	5	LRRC66	4	52883476	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	21668	52883476	138270800	18	76878										
TECRL	0	genome.wustl.edu	37	chr4	65274933	65274933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgactgctggagttggtcttAgagggcccgctgagagtaca	15	8	1	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	4	65274933	65274933	A	G	SNP	TECRL	ENST00000381210	human	ensembl	69_37n	-1	known	missense	c.137	p.L46P	0.976	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	56	0	0	33	11	25	-	-	-	G	65274933	A	G	65274933	3	3	970	1	0	0	0	0	1	0	0	0	15841	420	15	5	1002	5	TECRL	4	65274933	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	12391457	65274933	125879343	19	76879										
EXOSC9	0	genome.wustl.edu	37	chr4	122725813	122725813	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tagacctacatttattaaatCatgatggaaatattattgat	5	4	1	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	4	122725813	122725813	C	T	SNP	EXOSC9	ENST00000379663	human	ensembl	69_37n	1	known	missense	c.421	p.H141Y	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737	58	0	0	55	15	21.43	-	-	-	T	122725813	C	T	122725813	3	4	970	1	0	0	0	0	1	0	0	0	5358	826	29	2	439	2	EXOSC9	4	122725813	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	57450880	122725813	68428463	20	76880										
C5orf42	0	genome.wustl.edu	37	chr5	37108550	37108550	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	atgtttttttgtatgctgcaGactatgacacggagcattag	10	6	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	37108550	37108550	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	silent	c.9262	p.L3088	0.001	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	49	0	0	42	5	10.64	-	-	-	A	37108550	G	A	37108550	2	1	970	1	0	0	0	0	0	0	0	1	2322	933	33	2		2	C5orf42	5	37108550	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		37108550	143806710	21	76881										
FYB	0	genome.wustl.edu	37	chr5	39203057	39203057	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttgccccccgtgttatatttCgccatgagggactttacatc	8	12	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	39203057	39203057	C	T	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	silent	c.36	p.A12	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	68	0	0	75	22	22.68	-	-	-	T	39203057	C	T	39203057	2	4	970	1	0	0	0	0	0	0	0	1	6173	871	31	1		1	FYB	5	39203057	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	2094507	39203057	141712203	22	76882										
ANKHD1	0	genome.wustl.edu	37	chr5	139889648	139889648	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	caaaaagggaaatacgccacTttggctggcatccaatggag	11	9	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	139889648	139889648	T	A	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	1	known	missense	c.3986	p.L1329H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	95	0	0	23	18	43.9	-	-	-	A	139889648	T	A	139889648	3	1	970	1	0	0	0	0	1	0	0	0	628	1609	56	5	4178	5	ANKHD1	5	139889648	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	100686591	139889648	41025612	23	76883										
PCDHA4	0	genome.wustl.edu	37	chr5	140188134	140188134	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gtgaacgacaacgctccggcGttcgcgcagcccgagtacac	12	15	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	140188134	140188134	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	1	known	silent	c.1362	p.A454	0.000	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	118	0	0	98	48	32.88	-	-	-	A	140188134	G	A	140188134	2	1	970	1	0	0	0	0	0	0	0	1	11599	1132	40	1		1	PCDHA4	5	140188134	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	298486	140188134	40727126	24	76884										
FGF18	0	genome.wustl.edu	37	chr5	170863146	170863146	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ccgcatccacgtggagaaccAgacgcgggctcgggacgatg	15	13	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	170863146	170863146	A	G	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	1	known	missense	c.119	p.Q40R	1.000	superfamily_Cytokine_IL1-like	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	41	0	0	24	9	27.27	-	-	-	G	170863146	A	G	170863146	3	3	970	1	0	0	0	0	1	0	0	0	5892	188	7	5	129	5	FGF18	5	170863146	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	30675012	170863146	10052114	25	76885										
GFPT2	0	genome.wustl.edu	37	chr5	179740926	179740927	+	Frame_Shift_Ins	INS	-	-	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gtgagagcgccgcggtccttINSacagtagcgcagcgccagga							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	5	179740926	179740927	-	A	INS	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1312_1311	p.K437fs	1.000:0.889	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	48	0	0	11	2	15.38	-	-	-	A	179740927	-	A	179740926	7	5	970	1	0	1	1	0	0	0	0	0	6398	1763	61	0	760	0	GFPT2	5	179740926	Frame_Shift_Ins	INS	-	TCGA-OL-A5RZ-01A-11D-A28B-09	8877780	179740926	1174334	26	76886										
COL12A1	0	genome.wustl.edu	37	chr6	75875406	75875406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tttccatgagaccctgtaacCgcgaaccattcctggagcag	9	13	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	6	75875406	75875406	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	69_37n	-1	known	missense	c.2800	p.G934S	0.181	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	92	0	0	42	18	30	-	-	-	T	75875406	C	T	75875406	3	4	970	1	0	0	0	0	1	0	0	0	3699	652	23	1	6603	1	COL12A1	6	75875406	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		75875406	95239661	27	76887										
STX11	0	genome.wustl.edu	37	chr6	144508475	144508475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	atggcggtgctggtggagaaGcaggccgacaccctgaacgt	16	10	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	6	144508475	144508475	G	A	SNP	STX11	ENST00000367568	human	ensembl	69_37n	1	known	silent	c.711	p.K237	1.000	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604	57	0	0	48	11	18.64	-	-	-	A	144508475	G	A	144508475	2	1	970	1	0	0	0	0	0	0	0	1	15428	962	34	4		4	STX11	6	144508475	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	68633069	144508475	26606592	28	76888										
IGF2R	0	genome.wustl.edu	37	chr6	160450647	160450647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttgtgatggtcacagccctgCggtgactattacatttgttt	10	8	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	6	160450647	160450647	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	1	known	missense	c.842	p.A281V	0.274	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	65	0	0	53	9	14.52	-	-	-	T	160450647	C	T	160450647	3	4	970	1	0	0	0	0	1	0	0	0	7630	768	27	1	868	1	IGF2R	6	160450647	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	15942172	160450647	10664420	29	76889										
CARD11	0	genome.wustl.edu	37	chr7	2962874	2962874	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ccccccagcagggtgagctgGgaggtgaggctgtcgccatt	16	12	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	2962874	2962874	G	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.2034	p.S678	0.002	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	90	0	0	36	35	49.3	-	-	-	T	2962874	G	T	2962874	2	4	970	1	0	0	0	0	0	0	0	1	2670	1219	43	4		4	CARD11	7	2962874	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		2962874	156175789	30	76890										
THSD7A	0	genome.wustl.edu	37	chr7	11676273	11676273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	actcacagatgatatcctccGcaggaatgtctttgtctttc	7	11	3	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	11676273	11676273	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	missense	c.506	p.A169V	0.992	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	32	0	0	26	12	31.58	-	-	-	A	11676273	G	A	11676273	3	1	970	1	0	0	0	0	1	0	0	0	15974	1087	38	1	4571	1	THSD7A	7	11676273	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	8713399	11676273	147462390	31	76891										
PCLO	0	genome.wustl.edu	37	chr7	82544297	82544297	+	Frame_Shift_Del	DEL	G	G	-													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aaactggtcggcttagttctGgcagaggatgatgcatgact							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	82544297	82544297	G	-	DEL	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_del	c.13005	p.R4336fs	0.760	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	52	0	0	37	13	25	-	-	-	-	82544297	G	-	82544297	7	5	970	1	0	1	0	1	0	0	0	0	11656	1335	47	0	2516	0	PCLO	7	82544297	Frame_Shift_Del	DEL	G	TCGA-OL-A5RZ-01A-11D-A28B-09	70868024	82544297	76594366	32	76892										
SLC26A4	0	genome.wustl.edu	37	chr7	107355875	107355875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cttgcttccacaggctatgcGtacacttgcatcctgaaagt	8	12	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	107355875	107355875	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	69_37n	1	known	missense	c.2327	p.R776H	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	70	0	0	42	18	30	-	-	-	A	107355875	G	A	107355875	3	1	970	1	0	0	0	0	1	0	0	0	14608	1145	40	1	2405	1	SLC26A4	7	107355875	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	24811578	107355875	51782788	33	76893										
WDR91	0	genome.wustl.edu	37	chr7	134871826	134871826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	acttgaacctgcttgtagccGctgtatccagacagcacaaa	8	12	0	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	134871826	134871826	G	A	SNP	WDR91	ENST00000344400	human	ensembl	69_37n	-1	known	missense	c.1864	p.R622W	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875	46	0	0	30	5	14.29	-	-	-	A	134871826	G	A	134871826	3	1	970	1	0	0	0	0	1	0	0	0	17435	1078	38	1	274	1	WDR91	7	134871826	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	27515951	134871826	24266837	34	76894										
KEL	0	genome.wustl.edu	37	chr7	142649695	142649695	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggagaaagggtcaccaccagCcctaagatcatgtggctctg	12	11	3	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	142649695	142649695	C	T	SNP	KEL	ENST00000355265	human	ensembl	69_37n	-1	known	silent	c.1104	p.G368	0.675	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	55	0	0	32	12	27.27	-	-	-	T	142649695	C	T	142649695	2	4	970	1	0	0	0	0	0	0	0	1	8195	726	26	4		4	KEL	7	142649695	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	7777869	142649695	16488968	35	76895										
NUB1	0	genome.wustl.edu	37	chr7	151052933	151052933	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aaacaatctgaagaggacgcGaggaaaaacttccagttaga	10	7	1	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	7	151052933	151052933	G	A	SNP	NUB1	ENST00000568733	human	ensembl	69_37n	1	known	silent	c.567	p.A189	0.000	NULL	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374	36	0	0	41	13	24.07	-	-	-	A	151052933	G	A	151052933	2	1	970	1	0	0	0	0	0	0	0	1	10787	1045	37	1		1	NUB1	7	151052933	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	8403238	151052933	8085730	36	76896										
DOCK5	0	genome.wustl.edu	37	chr8	25222170	25222170	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tccgtgctataaatcagtttGctgaagttctcacaagattc	7	9	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	8	25222170	25222170	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	1	known	missense	c.3073	p.A1025S	0.996	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	51	0	0	16	3	15.79	-	-	-	T	25222170	G	T	25222170	3	4	970	1	0	0	0	0	1	0	0	0	4725	1319	46	4	3191	4	DOCK5	8	25222170	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		25222170	121141852	37	76897										
XKR9	0	genome.wustl.edu	37	chr8	71619175	71619175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gtttactttataggtattggTttgccttaaaaaggggttac	10	4	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	8	71619175	71619175	T	C	SNP	XKR9	ENST00000408926	human	ensembl	69_37n	1	known	missense	c.280	p.F94L	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR9	HGNC	ENSG00000221947	74	0	0	90	19	17.43	-	-	-	C	71619175	T	C	71619175	3	2	970	1	0	0	0	0	1	0	0	0	17535	1725	60	5	286	5	XKR9	8	71619175	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	46397005	71619175	74744847	38	76898										
TLE1	0	genome.wustl.edu	37	chr9	84202721	84202721	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aatgtcaatacagctggctcCgtctgtgtggccctggaatt	11	10	2	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	9	84202721	84202721	C	G	SNP	TLE1	ENST00000376499	human	ensembl	69_37n	-1	known	missense	c.1852	p.G618R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781	48	0	0	27	10	27.03	-	-	-	G	84202721	C	G	84202721	3	3	970	1	0	0	0	0	1	0	0	0	16033	661	23	3	476	3	TLE1	9	84202721	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		84202721	57010710	39	76899										
XPA	0	genome.wustl.edu	37	chr9	100437634	100437634	+	RNA	DEL	T	T	-													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttcatctatgaagatgttgcTtttttttttgaattttgaaa							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936	13	0	0	15	3	16.67	-	-	-	-	100437634	T	-	100437634	6	5	970	0	1	1	0	1	0	0	0	0	17537	1624	56	0		0	XPA	9	100437634	RNA	DEL	T	TCGA-OL-A5RZ-01A-11D-A28B-09	16234913	100437634	40775797	40	76900										
ABCA2	0	genome.wustl.edu	37	chr9	139911974	139911974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cagaacatgatggtggccacCgcgtagactgccaggaagag	14	10	0	4			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	9	139911974	139911974	C	T	SNP	ABCA2	ENST00000479446	human	ensembl	69_37n	-1	known	missense	c.431	p.R144Q	0.056	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCA2	HGNC	ENSG00000107331	42	0	0	16	11	40.74	-	-	-	T	139911974	C	T	139911974	3	4	970	1	0	0	0	0	1	0	0	0	32	639	23	1	5060	1	ABCA2	9	139911974	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	39474340	139911974	1301457	41	76901										
PDZD7	0	genome.wustl.edu	37	chr10	102783752	102783752	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgctctgagcccccgcgcacGctgaagcccagcctccctgc	10	20	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	10	102783752	102783752	G	A	SNP	PDZD7	ENST00000370215	human	ensembl	69_37n	-1	known	silent	c.300	p.S100	0.649	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	45	0	0	27	8	22.86	-	-	-	A	102783752	G	A	102783752	2	1	970	1	0	0	0	0	0	0	0	1	11777	1078	38	1		1	PDZD7	10	102783752	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		102783752	32750995	42	76902										
C10orf91	0	genome.wustl.edu	37	chr10	134261353	134261353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	atcaaggccaaccccagaccAcgagagcgctttctctgcgt	9	15	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	10	134261353	134261353	A	G	SNP	C10orf91	ENST00000321248	human	ensembl	69_37n	1	known	missense	c.226	p.T76A	0.001	NULL	NULL	-	no_errors	C10orf91	HGNC	ENSG00000180066	39	0	0	25	9	26.47	-	-	-	G	134261353	A	G	134261353	3	3	970	1	0	0	0	0	1	0	0	0	1634	159	6	5	236	5	C10orf91	10	134261353	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	31477601	134261353	1273394	43	76903										
QSER1	0	genome.wustl.edu	37	chr11	32956872	32956872	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aaaaacttggaacatttatcTtcattttcttctgatgaaga	5	6	4	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	11	32956872	32956872	T	A	SNP	QSER1	ENST00000524678	human	ensembl	69_37n	1	putative	missense	c.743	p.L248H	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	QSER1	HGNC	ENSG00000060749	34	0	0	29	10	25.64	-	-	-	A	32956872	T	A	32956872	3	1	970	1	0	0	0	0	1	0	0	0	12965	1596	56	5	3687	5	QSER1	11	32956872	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09		32956872	102049644	44	76904										
ZDHHC5	0	genome.wustl.edu	37	chr11	57467477	57467477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agaaggtgtcaggggttggtGgtaccacctatgagatttcg	15	6	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	11	57467477	57467477	G	T	SNP	ZDHHC5	ENST00000287169	human	ensembl	69_37n	1	known	missense	c.2122	p.G708C	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599	74	0	0	32	10	23.81	-	-	-	T	57467477	G	T	57467477	3	4	970	1	0	0	0	0	1	0	0	0	17714	1348	47	4	2164	4	ZDHHC5	11	57467477	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	24510605	57467477	77539039	45	76905										
RASGRP2	0	genome.wustl.edu	37	chr11	64502632	64502632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgaggtaagggaagttcccaCggatgatctggaattcttcc	12	8	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	11	64502632	64502632	C	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.1364	p.R455H	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	58	0	0	34	6	15	-	-	-	T	64502632	C	T	64502632	3	4	970	1	0	0	0	0	1	0	0	0	13158	536	19	1	485	1	RASGRP2	11	64502632	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	7035155	64502632	70503884	46	76906										
PPFIA1	0	genome.wustl.edu	37	chr11	70211384	70211384	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cgaactttgcctcctcggccCcttctctgtgcctgtggctt	9	16	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	11	70211384	70211384	C	T	SNP	PPFIA1	ENST00000530548	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	PPFIA1	HGNC	ENSG00000131626	8	0	0	10	5	33.33	-	-	-	T	70211384	C	T	70211384	1	4	970	0	1	0	0	0	0	0	0	0	12382	638	22	4		4	PPFIA1	11	70211384	RNA	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	5708752	70211384	64795132	47	76907										
VWF	0	genome.wustl.edu	37	chr12	6134806	6134806	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ctacaggaggaatccaccatCgtctgcttcatgatgttgtt	9	10	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	6134806	6134806	C	T	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	silent	c.3162	p.T1054	0.587	pirsf_VWF,smart_Unchr_dom_Cys-rich	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	58	0	0	65	11	14.47	-	-	-	T	6134806	C	T	6134806	2	4	970	1	0	0	0	0	0	0	0	1	17343	871	31	1		1	VWF	12	6134806	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		6134806	127717089	48	76908										
CPNE8	0	genome.wustl.edu	37	chr12	39155972	39155972	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cttgaatgcttgccatactgGatttagagtgtttttgacaa	9	6	0	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	39155972	39155972	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	missense	c.622	p.P208T	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	56	0	0	42	10	19.23	-	-	-	T	39155972	G	T	39155972	3	4	970	1	0	0	0	0	1	0	0	0	3848	1174	41	2	1120	2	CPNE8	12	39155972	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	33021166	39155972	94695923	49	76909										
PDZRN4	0	genome.wustl.edu	37	chr12	41961642	41961642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tcttagaggagttaaacttgGagatgttggaagaagagcat	13	3	1	4			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	41961642	41961642	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	69_37n	1	known	missense	c.1525	p.E509K	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	82	0	0	48	9	15.79	-	-	-	A	41961642	G	A	41961642	3	1	970	1	0	0	0	0	1	0	0	0	11783	1175	41	2	1632	2	PDZRN4	12	41961642	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	2805670	41961642	91890253	50	76910										
CCNT1	0	genome.wustl.edu	37	chr12	49093563	49093563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	taagctgggattccttacctCgaacaagttgagtgcacttt	9	9	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	49093563	49093563	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	69_37n	-1	known	missense	c.494	p.R165Q	1.000	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315	44	0	0	29	5	14.71	-	-	-	T	49093563	C	T	49093563	3	4	970	1	0	0	0	0	1	0	0	0	2963	884	31	1	1706	1	CCNT1	12	49093563	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	7131921	49093563	84758332	51	76911										
KRT75	0	genome.wustl.edu	37	chr12	52818468	52818468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggagtagccgctgcccccacCgaggcccaggtttccacctc	11	18	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	52818468	52818468	C	T	SNP	KRT75	ENST00000252245	human	ensembl	69_37n	-1	known	missense	c.1489	p.G497S	0.001	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454	98	0	0	49	13	20.97	-	-	-	T	52818468	C	T	52818468	3	4	970	1	0	0	0	0	1	0	0	0	8541	652	23	1	170	1	KRT75	12	52818468	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	3724905	52818468	81033427	52	76912										
NOS1	0	genome.wustl.edu	37	chr12	117669907	117669907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gatggtgcagggcgggaggcGgagctcgtctgtccagttac	18	9	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	117669907	117669907	G	A	SNP	NOS1	ENST00000317775	human	ensembl	69_37n	-1	known	missense	c.3265	p.R1089C	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_met	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_met,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	101	0	0	42	20	32.26	-	-	-	A	117669907	G	A	117669907	3	1	970	1	0	0	0	0	1	0	0	0	10613	1116	39	1	1071	1	NOS1	12	117669907	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	64851439	117669907	16181988	53	76913										
HNF1A	0	genome.wustl.edu	37	chr12	121434696	121434696	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggaccagtcactgtgctacaTcagtgatacctgggtgaacc	11	11	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	12	121434696	121434696	T	A	SNP	HNF1A	ENST00000543427	human	ensembl	69_37n	1	known	missense	c.1109	p.I370N	0.000	NULL	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HNF1A	HGNC	ENSG00000135100	34	0	0	8	10	55.56	-	-	-	A	121434696	T	A	121434696	3	1	970	1	0	0	0	0	1	0	0	0	7302	1450	50	5		5	HNF1A	12	121434696	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	3764789	121434696	12417199	54	76914										
OR4M1	0	genome.wustl.edu	37	chr14	20248587	20248587	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttatatttctatccttctatTtgttcatcctaccaggaaat	3	9	3	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	14	20248587	20248587	T	C	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	1	known	silent	c.106	p.L36	0.236	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	123	0	0	80	11	12.09	-	-	-	C	20248587	T	C	20248587	2	2	970	1	0	0	0	0	0	0	0	1	11148	1838	64	5		5	OR4M1	14	20248587	Silent	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09		20248587	87100953	55	76915										
GALNTL1	0	genome.wustl.edu	37	chr14	69806254	69806254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ctccttttaggaatactaagCgcactgcagaagtgtggatg	11	8	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	14	69806254	69806254	C	T	SNP	GALNTL1	ENST00000337827	human	ensembl	69_37n	1	known	missense	c.1105	p.R369C	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL1	HGNC	ENSG00000100626	77	0	0	29	15	34.09	-	-	-	T	69806254	C	T	69806254	3	4	970	1	0	0	0	0	1	0	0	0	6271	768	27	1	1147	1	GALNTL1	14	69806254	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	49557667	69806254	37543286	56	76916										
CDCA4	0	genome.wustl.edu	37	chr14	105478225	105478226	+	Frame_Shift_Ins	INS	-	-	T													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gggctccctccacgtcttccINStcgtggccaacacatttcct							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	14	105478225	105478226	-	T	INS	CDCA4	ENST00000336219	human	ensembl	69_37n	-1	known	frame_shift_ins	c.42_41	p.E15fs	0.986:0.995	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779	31	0	0	5	2	28.57	-	-	-	T	105478226	-	T	105478225	7	5	970	1	0	1	1	0	0	0	0	0	3117	680	24	0	687	0	CDCA4	14	105478225	Frame_Shift_Ins	INS	-	TCGA-OL-A5RZ-01A-11D-A28B-09	35671971	105478225	1871315	57	76917										
RYR3	0	genome.wustl.edu	37	chr15	34021156	34021156	+	Missense_Mutation	SNP	C	C	G													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gcgtttatggcattaaggatCaaacttttctgctccacttg							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	34021156	34021156	C	G	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.7132	p.Q2378E	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	75	0	0	88	34	27.87	-	-	-	G	34021156	C	G	34021156	3	3	970	1	0	0	0	0	1	0	0	0	13856	827	29	2	7318	2	RYR3	15	34021156	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		34021156	68510236	58	76918	534	2								
RYR3	0	genome.wustl.edu	37	chr15	34021165	34021165	+	Missense_Mutation	SNP	C	C	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gcattaaggatcaaacttttCtgctccacttgctggaggtt							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	34021165	34021165	C	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	missense	c.7141	p.L2381M	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	80	0	0	87	36	29.27	-	-	-	A	34021165	C	A	34021165	3	1	970	1	0	0	0	0	1	0	0	0	13856	912	32	2	7327	2	RYR3	15	34021165	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	9	34021165	68510227	59	76919	534	2								
RYR3	0	genome.wustl.edu	37	chr15	34080597	34080597	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ctcatcctggacgagttcgcGgtcctctgcagagatctcta	10	13	3	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	34080597	34080597	G	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	1	known	silent	c.9768	p.A3256	0.103	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	55	0	0	30	4	11.76	-	-	-	T	34080597	G	T	34080597	2	4	970	1	0	0	0	0	0	0	0	1	13856	1103	39	3		3	RYR3	15	34080597	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	59432	34080597	68450795	60	76920										
LIPC	0	genome.wustl.edu	37	chr15	58855765	58855765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tcacgctggatgtggatatcGgcgagctgatcatgatcaag	13	8	3	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	58855765	58855765	G	A	SNP	LIPC	ENST00000299022	human	ensembl	69_37n	1	known	missense	c.1231	p.G411S	1.000	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,pfscan_LipOase_LH2	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_hep,prints_Lipase,prints_Lipo_Lipase,pfscan_LipOase_LH2	-	no_errors	LIPC	HGNC	ENSG00000166035	53	0	0	24	14	36.84	-	-	-	A	58855765	G	A	58855765	3	1	970	1	0	0	0	0	1	0	0	0	8876	1116	39	1	1261	1	LIPC	15	58855765	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	24775168	58855765	43675627	61	76921										
THSD4	0	genome.wustl.edu	37	chr15	72057488	72057488	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aaccccccagccagcaatccTgccacctcaagccttgcgga	7	19	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	72057488	72057488	T	A	SNP	THSD4	ENST00000261862	human	ensembl	69_37n	1	known	missense	c.2719	p.C907S	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720	89	0	0	55	8	12.7	-	-	-	A	72057488	T	A	72057488	3	1	970	1	0	0	0	0	1	0	0	0	15973	1580	55	5	2777	5	THSD4	15	72057488	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	13201723	72057488	30473904	62	76922										
CIB2	0	genome.wustl.edu	37	chr15	78401589	78401589	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ctggttaccatagatcttgaAggcatagtttgccttgagct	10	8	1	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	15	78401589	78401589	A	T	SNP	CIB2	ENST00000258930	human	ensembl	69_37n	-1	known	missense	c.334	p.F112I	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CIB2	HGNC	ENSG00000136425	84	0	0	46	22	32.35	-	-	-	T	78401589	A	T	78401589	3	4	970	1	0	0	0	0	1	0	0	0	3450	72	3	5	241	5	CIB2	15	78401589	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	6344101	78401589	24129803	63	76923										
HS3ST2	0	genome.wustl.edu	37	chr16	22926804	22926804	+	Missense_Mutation	SNP	T	T	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	acagattgatcctgaagtgaTagaccagctccgagaatttt							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	22926804	22926804	T	A	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	missense	c.1025	p.I342K	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	14	0	0	14	6	30	-	-	-	A	22926804	T	A	22926804	3	1	970	1	0	0	0	0	1	0	0	0	7415	1406	49	5	1031	5	HS3ST2	16	22926804	Missense_Mutation	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09		22926804	67427949	64	76924	535	2								
HS3ST2	0	genome.wustl.edu	37	chr16	22926805	22926805	+	Silent	SNP	A	A	T													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cagattgatcctgaagtgatAgaccagctccgagaatttta							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	22926805	22926805	A	T	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	1	known	silent	c.1026	p.I342	0.998	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	14	0	0	14	6	30	-	-	-	T	22926805	A	T	22926805	2	4	970	1	0	0	0	0	0	0	0	1	7415	410	15	5		5	HS3ST2	16	22926805	Silent	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	1	22926805	67427948	65	76925	535	2								
C16orf87	0	genome.wustl.edu	37	chr16	46843576	46843576	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cttcctcttcctcgtctgatAtgatctgaatggctgttact	7	11	3	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	46843576	46843576	A	C	SNP	C16orf87	ENST00000285697	human	ensembl	69_37n	-1	known	missense	c.285	p.H95Q	1.000	NULL	pfam_UPF0547	-	no_errors	C16orf87	HGNC	ENSG00000155330	85	0	0	98	18	15.52	-	-	-	C	46843576	A	C	46843576	3	2	970	1	0	0	0	0	1	0	0	0	1853	446	16	5	187	5	C16orf87	16	46843576	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	23916771	46843576	43511177	66	76926										
C16orf87	0	genome.wustl.edu	37	chr16	46843631	46843631	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgttttctaaatctttatttActgtagaatttatcttctct	3	6	4	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	46843631	46843631	A	T	SNP	C16orf87	ENST00000285697	human	ensembl	69_37n	-1	known	missense	c.230	p.V77E	1.000	NULL	pfam_UPF0547	-	no_errors	C16orf87	HGNC	ENSG00000155330	70	0	0	96	13	11.93	-	-	-	T	46843631	A	T	46843631	3	4	970	1	0	0	0	0	1	0	0	0	1853	391	14	5	242	5	C16orf87	16	46843631	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	55	46843631	43511122	67	76927										
NOD2	0	genome.wustl.edu	37	chr16	50745994	50745994	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cacttccactccatcccgccAgctgcaccgggtgaggccaa	9	18	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	50745994	50745994	A	C	SNP	NOD2	ENST00000300589	human	ensembl	69_37n	1	known	silent	c.2172	p.P724	0.001	NULL	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207	50	0	0	40	12	23.08	-	-	-	C	50745994	A	C	50745994	2	2	970	1	0	0	0	0	0	0	0	1	10589	175	7	5		5	NOD2	16	50745994	Silent	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	3902363	50745994	39608759	68	76928										
GOT2	0	genome.wustl.edu	37	chr16	58742155	58742155	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgccacagagatgcggccatCttttgtcatgtagatggaga	12	8	2	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	16	58742155	58742155	C	G	SNP	GOT2	ENST00000245206	human	ensembl	69_37n	-1	known	missense	c.1213	p.D405H	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_Asp_trans	-	no_errors	GOT2	HGNC	ENSG00000125166	25	0	0	21	8	27.59	-	-	-	G	58742155	C	G	58742155	3	3	970	1	0	0	0	0	1	0	0	0	6630	913	32	2	83	2	GOT2	16	58742155	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	7996161	58742155	31612598	69	76929										
GEMIN4	0	genome.wustl.edu	37	chr17	649083	649085	+	In_Frame_Del	DEL	CCA	CCA	-													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tacaatctcacacaggagctCcaggatatggatcgctagat							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	649083	649085	CCA	-	DEL	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	in_frame_del	c.2200_2198	p.LE733in_frame_delQ	0.094:0.129:0.999	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	30	0	0	18	3	14.29	-	-	-	-	649085	CCA	-	649083	7	5	970	1	0	1	0	1	0	0	0	0	6382	864	30	0	980	0	GEMIN4	17	649083	In_Frame_Del	DEL	CCA	TCGA-OL-A5RZ-01A-11D-A28B-09		649083	80546127	70	76930			1	123		2	2	22	N	CCA_C	7.122594e-05
GEMIN4	0	genome.wustl.edu	37	chr17	649104	649104	+	Frame_Shift_Del	DEL	C	C	-													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	caggatatggatcgctagatCcttcctatccaaagagaggc							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	649104	649104	C	-	DEL	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	frame_shift_del	c.2179	p.D727fs	1.000	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	30	0	0	11	3	21.43	-	-	-	-	649104	C	-	649104	7	5	970	1	0	1	0	1	0	0	0	0	6382	855	30	0	1001	0	GEMIN4	17	649104	Frame_Shift_Del	DEL	C	TCGA-OL-A5RZ-01A-11D-A28B-09	21	649104	80546106	71	76931			1	123		2	2	22	N	CCA_C	7.122594e-05
SMG6	0	genome.wustl.edu	37	chr17	2202914	2202914	+	Missense_Mutation	SNP	G	G	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cactgctcaagcctttgtcaGgctttcctctatccatatca							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	2202914	2202914	G	A	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.1133	p.P378L	0.008	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	41	0	0	42	31	42.47	-	-	-	A	2202914	G	A	2202914	3	1	970	1	0	0	0	0	1	0	0	0	14886	1000	35	4	3198	4	SMG6	17	2202914	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	1553810	2202914	78992296	72	76932	536	2	2	124	1553810	4	3	630	N	G	2.268986e-06
SMG6	0	genome.wustl.edu	37	chr17	2202915	2202915	+	Missense_Mutation	SNP	G	G	T													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	actgctcaagcctttgtcagGctttcctctatccatatcat							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	2202915	2202915	G	T	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.1132	p.P378T	0.004	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	41	0	0	42	31	42.47	-	-	-	T	2202915	G	T	2202915	3	4	970	1	0	0	0	0	1	0	0	0	14886	1203	42	4	3199	4	SMG6	17	2202915	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	1	2202915	78992295	73	76933	536	2	2	124	1553810	4	3	630	N	G	2.268986e-06
SMG6	0	genome.wustl.edu	37	chr17	2203052	2203052	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gctcaccctccccacggccaGaccagtttctttctaaatgt	6	16	3	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	2203052	2203052	G	A	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	missense	c.995	p.S332F	0.608	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	95	0	0	54	53	49.53	-	-	-	A	2203052	G	A	2203052	3	1	970	1	0	0	0	0	1	0	0	0	14886	942	33	2	3336	2	SMG6	17	2203052	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	137	2203052	78992158	74	76934			2	124	1553810	4	3	630	N	G	2.268986e-06
SMG6	0	genome.wustl.edu	37	chr17	2203543	2203543	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agttgttctacctggttgagGacttcttcctcctccacccg	8	14	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	2203543	2203543	G	A	SNP	SMG6	ENST00000263073	human	ensembl	69_37n	-1	known	silent	c.504	p.V168	0.020	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG6	HGNC	ENSG00000070366	84	0	0	52	63	54.31	-	-	-	A	2203543	G	A	2203543	2	1	970	1	0	0	0	0	0	0	0	1	14886	1161	41	2		2	SMG6	17	2203543	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	491	2203543	78991667	75	76935			2	124	1553810	4	3	630	N	G	2.268986e-06
CNTNAP1	0	genome.wustl.edu	37	chr17	40838951	40838951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gaggtctggtgggcgccgcgCggaagaacctggcctatcgg	18	11	1	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	40838951	40838951	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	1	known	missense	c.931	p.R311W	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	64	0	0	20	12	37.5	-	-	-	T	40838951	C	T	40838951	3	4	970	1	0	0	0	0	1	0	0	0	3676	759	27	1	957	1	CNTNAP1	17	40838951	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	38635408	40838951	40356259	76	76936										
PLEKHM1	0	genome.wustl.edu	37	chr17	43514454	43514454	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gtgctggtttccagtcatttCtccttctcctaatggggcca	9	12	3	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	43514454	43514454	C	T	SNP	PLEKHM1	ENST00000580404	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLEKHM1	HGNC	ENSG00000225190	49	0	0	51	11	17.74	-	-	-	T	43514454	C	T	43514454	1	4	970	0	1	0	0	0	0	0	0	0	12154	928	32	2		2	PLEKHM1	17	43514454	RNA	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	2675503	43514454	37680756	77	76937										
CACNA1G	0	genome.wustl.edu	37	chr17	48653606	48653606	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tagaggtggctgccagctctGggcccccaaccctcaccagc	11	17	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	48653606	48653606	G	T	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	1	known	missense	c.1843	p.G615W	0.991	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	46	0	0	16	16	50	-	-	-	T	48653606	G	T	48653606	3	4	970	1	0	0	0	0	1	0	0	0	2569	1348	47	4	1873	4	CACNA1G	17	48653606	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	5139152	48653606	32541604	78	76938										
USP32	0	genome.wustl.edu	37	chr17	58258807	58258807	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gccattgccacatgcttcatGctcataaaggaatccattgg	8	11	2	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	58258807	58258807	G	C	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4426	p.H1476D	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	140	0	0	177	32	15.31	-	-	-	C	58258807	G	C	58258807	3	2	970	1	0	0	0	0	1	0	0	0	17160	1319	46	4	400	4	USP32	17	58258807	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	9605201	58258807	22936403	79	76939										
FSCN2	0	genome.wustl.edu	37	chr17	79495875	79495875	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgggtgctgcggtccgagccGcacggccgcttcttcggagg	17	13	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	17	79495875	79495875	G	A	SNP	FSCN2	ENST00000334850	human	ensembl	69_37n	1	known	silent	c.318	p.P106	0.602	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	19	0	0	5	7	58.33	-	-	-	A	79495875	G	A	79495875	2	1	970	1	0	0	0	0	0	0	0	1	6117	1074	38	1		1	FSCN2	17	79495875	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	21237068	79495875	1699335	80	76940										
MYOM1	0	genome.wustl.edu	37	chr18	3094299	3094299	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgccaactctgatttaactgGgacagctatgaaaagtaaaa	8	7	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	3094299	3094299	G	C	SNP	MYOM1	ENST00000356443	human	ensembl	69_37n	-1	known	missense	c.3733	p.P1245A	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM1	HGNC	ENSG00000101605	61	0	0	49	14	22.22	-	-	-	C	3094299	G	C	3094299	3	2	970	1	0	0	0	0	1	0	0	0	10163	1232	43	4	1376	4	MYOM1	18	3094299	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		3094299	74982949	81	76941										
LAMA1	0	genome.wustl.edu	37	chr18	7036046	7036046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	accgtctctaccggaatatcGtaggacaccgtgtatttcag	9	11	2	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	7036046	7036046	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	silent	c.1779	p.Y593	0.949	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	60	0	0	29	5	14.71	-	-	-	A	7036046	G	A	7036046	2	1	970	1	0	0	0	0	0	0	0	1	8659	1140	40	1		1	LAMA1	18	7036046	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	3941747	7036046	71041202	82	76942										
CABYR	0	genome.wustl.edu	37	chr18	21736512	21736512	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agtcccaaatctgtagtagaAaagaccacctctggcatgtc	8	11	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	21736512	21736512	A	C	SNP	CABYR	ENST00000463087	human	ensembl	69_37n	1	known	missense	c.1047	p.E349D	0.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	32	0	0	20	9	31.03	-	-	-	C	21736512	A	C	21736512	3	2	970	1	0	0	0	0	1	0	0	0	2561	11	1	5	1057	5	CABYR	18	21736512	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	14700466	21736512	56340736	83	76943										
DSC2	0	genome.wustl.edu	37	chr18	28648096	28648096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aacctacagacccagccaccGatcctcttccttcatagtta	4	16	2	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	28648096	28648096	G	A	SNP	DSC2	ENST00000280904	human	ensembl	69_37n	-1	known	missense	c.2591	p.S864L	0.828	pfam_Cadherin_cytoplasmic-dom,prints_Desmo_cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin,prints_Desmo_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	71	0	0	43	6	12.24	-	-	-	A	28648096	G	A	28648096	3	1	970	1	0	0	0	0	1	0	0	0	4801	1059	37	1	118	1	DSC2	18	28648096	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	6911584	28648096	49429152	84	76944										
ASXL3	0	genome.wustl.edu	37	chr18	31250678	31250678	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agaagaaatggagtctcaatGatggtaaacaagactgttcc	10	6	1	4			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	31250678	31250678	G	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	1	known	missense	c.519	p.M173I	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	38	0	0	30	12	28.57	-	-	-	T	31250678	G	T	31250678	3	4	970	1	0	0	0	0	1	0	0	0	1072	1290	45	2	541	2	ASXL3	18	31250678	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	2602582	31250678	46826570	85	76945										
PIK3C3	0	genome.wustl.edu	37	chr18	39593429	39593429	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttgttgatgtacctattacaAttggtccaggctctcaaata	7	8	1	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	18	39593429	39593429	A	G	SNP	PIK3C3	ENST00000262039	human	ensembl	69_37n	1	known	silent	c.1194	p.Q398	0.992	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142	36	0	0	39	5	11.36	-	-	-	G	39593429	A	G	39593429	2	3	970	1	0	0	0	0	0	0	0	1	11986	98	4	5		5	PIK3C3	18	39593429	Silent	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	8342751	39593429	38483819	86	76946										
AP1M2	0	genome.wustl.edu	37	chr19	10692038	10692038	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cttgatggtaccgacgatttCgctcagaaggacgctgccgt	12	11	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	10692038	10692038	C	A	SNP	AP1M2	ENST00000590923	human	ensembl	69_37n	-1	known	nonsense	c.577	p.E193*	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M2	HGNC	ENSG00000129354	68	0	0	40	9	18	-	-	-	A	10692038	C	A	10692038	4	1	970	1	0	0	0	0	0	1	0	0	736	893	31	3	722	3	AP1M2	19	10692038	Nonsense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		10692038	48436945	87	76947										
TRMT1	0	genome.wustl.edu	37	chr19	13216335	13216335	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aggccggggaccccagttggCctccgggttagcctggaagc	16	13	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	13216335	13216335	C	A	SNP	TRMT1	ENST00000357720	human	ensembl	69_37n	-1	known	missense	c.1669	p.A557S	1.000	NULL	pfam_tRNA_MeTrfase_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_tRNA_MeTrfase_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907	36	0	0	22	20	47.62	-	-	-	A	13216335	C	A	13216335	3	1	970	1	0	0	0	0	1	0	0	0	16657	739	26	4	322	4	TRMT1	19	13216335	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	2524297	13216335	45912648	88	76948										
ILVBL	0	genome.wustl.edu	37	chr19	15227044	15227044	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gtccccgccatccaccaccaGaattgagttgtcaggtagcg	10	14	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	15227044	15227044	G	C	SNP	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	missense	c.1390	p.L464V	0.962	NULL	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	50	0	0	40	10	20	-	-	-	C	15227044	G	C	15227044	3	2	970	1	0	0	0	0	1	0	0	0	7769	933	33	2	528	2	ILVBL	19	15227044	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	2010709	15227044	43901939	89	76949										
SIN3B	0	genome.wustl.edu	37	chr19	16980796	16980796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agaagcagcttctggagtatCggaccgagaaggagcgggag	17	7	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	16980796	16980796	C	T	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	1	known	missense	c.2428	p.R810W	0.974	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	58	0	0	40	12	22.64	-	-	-	T	16980796	C	T	16980796	3	4	970	1	0	0	0	0	1	0	0	0	14415	875	31	1	2482	1	SIN3B	19	16980796	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	1753752	16980796	42148187	90	76950										
ZNF676	0	genome.wustl.edu	37	chr19	22363736	22363736	+	Silent	SNP	T	T	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	agggttgagacgctactaaaTcctttgccacattcttcaca							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	22363736	22363736	T	A	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	silent	c.783	p.G261	0.028	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	34	0	0	34	4	10.53	-	-	-	A	22363736	T	A	22363736	2	1	970	1	0	0	0	0	0	0	0	1	18179	1422	50	5		5	ZNF676	19	22363736	Silent	SNP	T	TCGA-OL-A5RZ-01A-11D-A28B-09	5382940	22363736	36765247	91	76951	537	2								
ZNF676	0	genome.wustl.edu	37	chr19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gggttgagacgctactaaatCctttgccacattcttcacat							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	22363737	22363737	C	G	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.782	p.G261A	0.018	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	34	0	0	34	4	10.53	-	-	-	G	22363737	C	G	22363737	3	3	970	1	0	0	0	0	1	0	0	0	18179	855	30	2	988	2	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	1	22363737	36765246	92	76952	537	2								
TSHZ3	0	genome.wustl.edu	37	chr19	31769718	31769718	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggggagctggggagctccagCtccagggaagctttcttccg	16	11	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	31769718	31769718	C	G	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.981	p.E327D	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	70	0	0	43	5	10.42	-	-	-	G	31769718	C	G	31769718	3	3	970	1	0	0	0	0	1	0	0	0	16721	796	28	4	2268	4	TSHZ3	19	31769718	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	9405981	31769718	27359265	93	76953										
LIN37	0	genome.wustl.edu	37	chr19	36245034	36245034	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ccatctccactgcagcctgaGatgcagggcacccctgacga	10	16	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	36245034	36245034	G	C	SNP	LIN37	ENST00000301159	human	ensembl	69_37n	1	known	missense	c.561	p.E187D	1.000	NULL	NULL	-	no_errors	LIN37	HGNC	ENSG00000267796	64	0	0	46	20	30.3	-	-	-	C	36245034	G	C	36245034	3	2	970	1	0	0	0	0	1	0	0	0	8863	933	33	2	587	2	LIN37	19	36245034	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	4475316	36245034	22883949	94	76954										
ZFP82	0	genome.wustl.edu	37	chr19	36884213	36884213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cgcactctaaaggccttcccGcattccttacattcataggg	7	14	2	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	36884213	36884213	G	A	SNP	ZFP82	ENST00000392161	human	ensembl	69_37n	-1	known	silent	c.1029	p.C343	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007	57	0	0	49	9	15.52	-	-	-	A	36884213	G	A	36884213	2	1	970	1	0	0	0	0	0	0	0	1	17749	1079	38	1		1	ZFP82	19	36884213	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	639179	36884213	22244770	95	76955										
ZNF160	0	genome.wustl.edu	37	chr19	53571593	53571593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	acattcattacatttgtaagGttttttcccagtatggattg	7	6	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	53571593	53571593	G	T	SNP	ZNF160	ENST00000418871	human	ensembl	69_37n	-1	known	missense	c.2194	p.P732T	0.824	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949	67	0	0	65	22	25.29	-	-	-	T	53571593	G	T	53571593	3	4	970	1	0	0	0	0	1	0	0	0	17835	1261	44	4	266	4	ZNF160	19	53571593	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	16687380	53571593	5557390	96	76956										
GP6	0	genome.wustl.edu	37	chr19	55526454	55526454	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgccagtcctctgccagaaaCcccgccaggattattaggat	9	13	1	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	19	55526454	55526454	C	A	SNP	GP6	ENST00000310373	human	ensembl	69_37n	-1	known	missense	c.859	p.V287F	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	55	0	0	34	11	24.44	-	-	-	A	55526454	C	A	55526454	3	1	970	1	0	0	0	0	1	0	0	0	6634	507	18	4	1007	4	GP6	19	55526454	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	1954861	55526454	3602529	97	76957										
ZCCHC3	0	genome.wustl.edu	37	chr20	279371	279371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tctgtggcaagcgaggacacGcctttgcccagtgtcccaaa	11	13	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	20	279371	279371	G	T	SNP	ZCCHC3	ENST00000382352	human	ensembl	69_37n	1	known	missense	c.1144	p.A382S	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC3	HGNC	ENSG00000177764	24	0	0	32	4	11.11	-	-	-	T	279371	G	T	279371	3	4	970	1	0	0	0	0	1	0	0	0	17685	1087	38	3	1146	3	ZCCHC3	20	279371	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		279371	62746149	98	76958										
KIF16B	0	genome.wustl.edu	37	chr20	16337021	16337021	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cctttccttgcccgcagaggAcgtagcgtgggatactaatt	11	11	0	1			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	20	16337021	16337021	A	G	SNP	KIF16B	ENST00000354981	human	ensembl	69_37n	-1	known	missense	c.3575	p.V1192A	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Kinesin_motor_dom,pfam_Phox,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Phox,smart_Kinesin_motor_dom,smart_Phox,pfscan_Phox,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	47	0	0	22	17	43.59	-	-	-	G	16337021	A	G	16337021	3	3	970	1	0	0	0	0	1	0	0	0	8330	275	10	5	394	5	KIF16B	20	16337021	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	16057650	16337021	46688499	99	76959										
DUSP15	0	genome.wustl.edu	37	chr20	30436212	30436212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgttgggggctgccttcagcGggtacaagaagaggaagcgg	18	7	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	20	30436212	30436212	G	A	SNP	DUSP15	ENST00000278979	human	ensembl	69_37n	-1	known	missense	c.883	p.R295C	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,superfamily_SMAD_FHA_domain,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP15	HGNC	ENSG00000149599	39	0	0	23	8	25.81	-	-	-	A	30436212	G	A	30436212	3	1	970	1	0	0	0	0	1	0	0	0	4850	1131	39	1		1	DUSP15	20	30436212	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	14099191	30436212	32589308	100	76960										
ASXL1	0	genome.wustl.edu	37	chr20	31023752	31023752	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	cgccaaaagatcccagattcCctactgctggccagtactga	8	14	0	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	20	31023752	31023752	C	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	1	known	silent	c.3237	p.S1079	0.894	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	45	0	0	22	11	33.33	-	-	-	G	31023752	C	G	31023752	2	3	970	1	0	0	0	0	0	0	0	1	1070	610	22	4		4	ASXL1	20	31023752	Silent	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	587540	31023752	32001768	101	76961										
CXADR	0	genome.wustl.edu	37	chr21	18933695	18933695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	aattgcaggagccattatagGaactttgcttgctctagcgc	10	9	1	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	21	18933695	18933695	G	A	SNP	CXADR	ENST00000284878	human	ensembl	69_37n	1	known	missense	c.734	p.G245E	0.997	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CXADR	HGNC	ENSG00000154639	58	0	0	25	7	21.88	-	-	-	A	18933695	G	A	18933695	3	1	970	1	0	0	0	0	1	0	0	0	4107	1174	41	2	756	2	CXADR	21	18933695	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		18933695	29196200	102	76962										
MORC3	0	genome.wustl.edu	37	chr21	37713805	37713805	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	gggtacaagaagcaggaaagGatggaccagattgcccctga	14	8	0	3			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	21	37713805	37713805	G	A	SNP	MORC3	ENST00000400485	human	ensembl	69_37n	1	known	silent	c.717	p.R239	0.527	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	39	0	0	31	8	20.51	-	-	-	A	37713805	G	A	37713805	2	1	970	1	0	0	0	0	0	0	0	1	9775	1165	41	2		2	MORC3	21	37713805	Silent	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	18780110	37713805	10416090	103	76963										
KCNJ15	0	genome.wustl.edu	37	chr21	39671401	39671401	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	actcaccctgttcgctgccaCttttgtgatgacctggttcc	8	14	1	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	21	39671401	39671401	C	A	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.218	p.T73N	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	92	0	0	63	13	17.11	-	-	-	A	39671401	C	A	39671401	3	1	970	1	0	0	0	0	1	0	0	0	8103	565	20	4	220	4	KCNJ15	21	39671401	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09	1957596	39671401	8458494	104	76964			3	125		3	2	30	N	G_C	9.835829e-05
KCNJ15	0	genome.wustl.edu	37	chr21	39671427	39671427	+	Missense_Mutation	SNP	G	G	A													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgatgacctggttcctttttGgagtcatctactatgccatc							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	21	39671427	39671427	G	A	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.244	p.G82R	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	110	0	0	61	11	15.28	-	-	-	A	39671427	G	A	39671427	3	1	970	1	0	0	0	0	1	0	0	0	8103	1349	47	4	246	4	KCNJ15	21	39671427	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	26	39671427	8458468	105	76965	538	2	3	125		3	2	30	N	G_C	9.835829e-05
KCNJ15	0	genome.wustl.edu	37	chr21	39671430	39671430	+	Missense_Mutation	SNP	G	G	T													0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	tgacctggttcctttttggaGtcatctactatgccatcgcg							TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	21	39671430	39671430	G	T	SNP	KCNJ15	ENST00000328656	human	ensembl	69_37n	1	known	missense	c.247	p.V83F	0.858	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551	112	0	0	63	11	14.86	-	-	-	T	39671430	G	T	39671430	3	4	970	1	0	0	0	0	1	0	0	0	8103	1029	36	4	249	4	KCNJ15	21	39671430	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	3	39671430	8458465	106	76966	538	2	3	125		3	2	30	N	G_C	9.835829e-05
MTMR3	0	genome.wustl.edu	37	chr22	30405064	30405064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggcaaacattcattctattcGgaggagttttcagtctctgc	9	9	4	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	22	30405064	30405064	G	A	SNP	MTMR3	ENST00000401950	human	ensembl	69_37n	1	known	missense	c.1067	p.R356Q	1.000	NULL	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330	47	0	0	9	17	65.38	-	-	-	A	30405064	G	A	30405064	3	1	970	1	0	0	0	0	1	0	0	0	10017	1116	39	1	1105	1	MTMR3	22	30405064	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09		30405064	20899502	107	76967										
TLR8	0	genome.wustl.edu	37	chrX	12939277	12939277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ctactctttttaactgatagCctatctgactttacatcttc	3	11	3	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	X	12939277	12939277	C	A	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	1	known	missense	c.2118	p.S706R	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	23	0	0	15	7	31.82	-	-	-	A	12939277	C	A	12939277	3	1	970	1	0	0	0	0	1	0	0	0	16052	738	26	4	2124	4	TLR8	23	12939277	Missense_Mutation	SNP	C	TCGA-OL-A5RZ-01A-11D-A28B-09		12939277	142331283	108	76968										
GLUD2	0	genome.wustl.edu	37	chrX	120181966	120181966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ggcccagcacagccagcaccGcacgccctgcaagggaggta	13	16	0	0			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	X	120181966	120181966	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	69_37n	1	known	missense	c.428	p.R143H	1.000	pfam_Glu/Leu/Phe/Val_DH_dimer_dom	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890	157	0	0	129	43	25	-	-	-	A	120181966	G	A	120181966	3	1	970	1	0	0	0	0	1	0	0	0	6529	1087	38	1	430	1	GLUD2	23	120181966	Missense_Mutation	SNP	G	TCGA-OL-A5RZ-01A-11D-A28B-09	107242689	120181966	35088594	109	76969										
GABRE	0	genome.wustl.edu	37	chrX	151129811	151129811	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0761904761904762	8	0.79133532817198	1.11196911196911	2.30947430947431	0.73227234202844	1	1	0	ttggaaatctgagcatgtggAgtgagcatccggcatcaatg	13	7	2	2			TCGA-OL-A5RZ-01A-11D-A28B-09	TCGA-OL-A5RZ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	baa7b066-2bc9-4bfe-9a76-5ba80f843b94	ba54e456-4cfc-4425-8d0c-615fc01715e1	X	151129811	151129811	A	T	SNP	GABRE	ENST00000370328	human	ensembl	69_37n	-1	known	missense	c.590	p.L197H	0.933	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287	30	0	0	11	4	26.67	-	-	-	T	151129811	A	T	151129811	3	4	970	1	0	0	0	0	1	0	0	0	6219	304	11	5	950	5	GABRE	23	151129811	Missense_Mutation	SNP	A	TCGA-OL-A5RZ-01A-11D-A28B-09	30947845	151129811	4140749	110	76970										
LUZP1	0	genome.wustl.edu	37	chr1	23419464	23419464	+	Frame_Shift_Del	DEL	C	C	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	catgtgagaagcttttgctgCcctcctgttggtgaaactgg							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	1	23419464	23419464	C	-	DEL	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	frame_shift_del	c.1291	p.A431fs	0.755	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	42	0	0	13	2	13.33	-	-	-	-	23419464	C	-	23419464	7	5	971	1	0	1	0	1	0	0	0	0	9152	739	26	0	1947	0	LUZP1	1	23419464	Frame_Shift_Del	DEL	C	TCGA-OL-A5S0-01A-11D-A28B-09		23419464	225831157	1	76971										
PPP1R8	0	genome.wustl.edu	37	chr1	28176726	28176726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	cccacacacagtgaagcaggCtcccagccacatggcatcca	8	17	0	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	1	28176726	28176726	C	T	SNP	PPP1R8	ENST00000311772	human	ensembl	69_37n	1	known	silent	c.825	p.G275	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	PPP1R8	HGNC	ENSG00000117751	60	0	0	12	7	36.84	-	-	-	T	28176726	C	T	28176726	2	4	971	1	0	0	0	0	0	0	0	1	12454	784	28	4		4	PPP1R8	1	28176726	Silent	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09	4757262	28176726	221073895	2	76972										
RPL5	0	genome.wustl.edu	37	chr1	93298556	93298556	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gattgctgtctggagcagtgCttcgcaaaagtttggcacaa	12	8	1	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	1	93298556	93298556	C	T	SNP	RPL5	ENST00000461952	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL5	HGNC	ENSG00000122406	74	0	0	47	11	18.97	-	-	-	T	93298556	C	T	93298556	1	4	971	0	1	0	0	0	0	0	0	0	13683	812	28	4		4	RPL5	1	93298556	RNA	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09	65121830	93298556	155952065	3	76973										
ANAPC1	0	genome.wustl.edu	37	chr2	112549996	112549996	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ggtgggctaagtgaaaaccaTagttcatttcaccacccgtt	9	10	2	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	2	112549996	112549996	T	C	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.4655	p.Y1552C	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	118	0	0	20	24	54.55	-	-	-	C	112549996	T	C	112549996	3	2	971	1	0	0	0	0	1	0	0	0	598	1406	49	5	1223	5	ANAPC1	2	112549996	Missense_Mutation	SNP	T	TCGA-OL-A5S0-01A-11D-A28B-09		112549996	130649377	4	76974										
AGAP1	0	genome.wustl.edu	37	chr2	236792028	236792028	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gtggcaaatcgttgaataaaGagtggaaaaagaaatatgtc	11	3	0	3			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	2	236792028	236792028	G	C	SNP	AGAP1	ENST00000304032	human	ensembl	69_37n	1	known	missense	c.1090	p.E364Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	68	0	0	24	4	14.29	-	-	-	C	236792028	G	C	236792028	3	2	971	1	0	0	0	0	1	0	0	0	366	943	33	2	1128	2	AGAP1	2	236792028	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	124242032	236792028	6407345	5	76975										
ANKRD28	0	genome.wustl.edu	37	chr3	15793256	15793256	+	Splice_Site	DEL	C	C	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ttactaagagaaatttcataCctcactacaagatgcaactg							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	3	15793256	15793256	C	-	DEL	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	splice_site_del	c.360+1	e4+1	1.000	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560	55	0	0	18	2	10	-	-	-	-	15793256	C	-	15793256	8	5	971	1	0	1	0	1	0	0	1	0	656	521	18	0	2999	0	ANKRD28	3	15793256	Splice_Site	DEL	C	TCGA-OL-A5S0-01A-11D-A28B-09		15793256	182229174	6	76976										
LIMD1	0	genome.wustl.edu	37	chr3	45636514	45636515	+	Frame_Shift_Ins	INS	-	-	C													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gaggaaactcgcagggtgttINScgccaccaagatggccaaaa							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	3	45636514	45636515	-	C	INS	LIMD1	ENST00000273317	human	ensembl	69_37n	1	known	frame_shift_ins	c.143_144	p.A49fs	1.000:0.992	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791	54	0	0	20	7	25.93	-	-	-	C	45636515	-	C	45636514	7	5	971	1	0	1	1	0	0	0	0	0	8853	1783	62	0	145	0	LIMD1	3	45636514	Frame_Shift_Ins	INS	-	TCGA-OL-A5S0-01A-11D-A28B-09	29843258	45636514	152385916	7	76977										
PIK3CA	0	genome.wustl.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0	19	9	32.14	-	-	-	A	178936082	G	A	178936082	3	1	971	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	133299568	178936082	19086348	8	76978										
CCDC149	0	genome.wustl.edu	37	chr4	24821785	24821786	+	RNA	DEL	CA	CA	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	caccctagccctaacccttgCacacacacacacacaaaatc							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	4	24821785	24821786	CA	-	DEL	CCDC149	ENST00000507096	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002:0.001	-	-	-	no_errors	CCDC149	HGNC	ENSG00000181982	25	0	0	3	2	40	-	-	-	-	24821786	CA	-	24821785	6	5	971	0	1	1	0	1	0	0	0	0	2808	725	25	0		0	CCDC149	4	24821785	RNA	DEL	CA	TCGA-OL-A5S0-01A-11D-A28B-09		24821785	166332491	9	76979										
IL21	0	genome.wustl.edu	37	chr4	123536949	123536950	+	Frame_Shift_Ins	INS	-	-	G													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tgtatttgctgactttagttINSgggccttctgaaagcaggaa							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	4	123536949	123536950	-	G	INS	IL21	ENST00000264497	human	ensembl	69_37n	-1	known	frame_shift_ins	c.248_247	p.Q83fs	0.932:0.940	pfam_Interleukin_15-like	pfam_Interleukin_15-like	-	no_errors	IL21	HGNC	ENSG00000138684	39	0	0	11	2	15.38	-	-	-	G	123536950	-	G	123536949	7	5	971	1	0	1	1	0	0	0	0	0	7724	1812	63	0	252	0	IL21	4	123536949	Frame_Shift_Ins	INS	-	TCGA-OL-A5S0-01A-11D-A28B-09	98715164	123536949	67617327	10	76980										
PLK2	0	genome.wustl.edu	37	chr5	57754229	57754229	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tggcgtcaatgacttacctaGtttgagatctctgtgcaaga	10	8	2	3			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	5	57754229	57754229	G	C	SNP	PLK2	ENST00000274289	human	ensembl	69_37n	-1	known	missense	c.622	p.L208V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	75	0	0	10	12	54.55	-	-	-	C	57754229	G	C	57754229	3	2	971	1	0	0	0	0	1	0	0	0	12170	1020	36	4	1479	4	PLK2	5	57754229	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		57754229	123161031	11	76981										
GPRIN1	0	genome.wustl.edu	37	chr5	176026312	176026312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	taaacatgggatctgccttcCgtgaggacccaggatcctcc	10	13	1	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	5	176026312	176026312	C	T	SNP	GPRIN1	ENST00000303991	human	ensembl	69_37n	-1	known	missense	c.524	p.R175Q	0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	118	0	0	49	10	16.95	-	-	-	T	176026312	C	T	176026312	3	4	971	1	0	0	0	0	1	0	0	0	6780	652	23	1	2506	1	GPRIN1	5	176026312	Missense_Mutation	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09	118272083	176026312	4888948	12	76982										
ABCB1	0	genome.wustl.edu	37	chr7	87144685	87144685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ccctgaagcactgggatgtcCggtcgggtgggatagttgaa	16	8	0	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	7	87144685	87144685	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.3144	p.P1048	0.022	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	97	0	0	34	14	29.17	-	-	-	T	87144685	C	T	87144685	2	4	971	1	0	0	0	0	0	0	0	1	40	639	23	1		1	ABCB1	7	87144685	Silent	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09		87144685	71993978	13	76983										
WDR86	0	genome.wustl.edu	37	chr7	151093174	151093174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	taggctagggtcagcacgcaGttgcggtggccccggaactc	15	12	1	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	7	151093174	151093174	G	T	SNP	WDR86	ENST00000477459	human	ensembl	69_37n	-1	known	missense	c.30	p.N10K	0.998	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR86	HGNC	ENSG00000187260	167	0	0	88	18	16.98	-	-	-	T	151093174	G	T	151093174	3	4	971	1	0	0	0	0	1	0	0	0	17431	1020	36	4	732	4	WDR86	7	151093174	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	63948489	151093174	8045489	14	76984										
BLK	0	genome.wustl.edu	37	chr8	11412257	11412257	+	Frame_Shift_Del	DEL	T	T	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tcatgaaccctccaggtgccTtctccctgtctgtgaaggat							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	8	11412257	11412257	T	-	DEL	BLK	ENST00000259089	human	ensembl	69_37n	1	known	frame_shift_del	c.478	p.F160fs	0.960	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	68	0	0	16	2	11.11	-	-	-	-	11412257	T	-	11412257	7	5	971	1	0	1	0	1	0	0	0	0	1449	1609	56	0	500	0	BLK	8	11412257	Frame_Shift_Del	DEL	T	TCGA-OL-A5S0-01A-11D-A28B-09		11412257	134951765	15	76985										
ANGPT1	0	genome.wustl.edu	37	chr8	108315494	108315494	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gggttctggcatattattaaTataaatagtgtagattccac	8	5	1	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	8	108315494	108315494	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.910	p.I304V	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	70	0	0	50	9	15.25	-	-	-	C	108315494	T	C	108315494	3	2	971	1	0	0	0	0	1	0	0	0	610	1406	49	5	606	5	ANGPT1	8	108315494	Missense_Mutation	SNP	T	TCGA-OL-A5S0-01A-11D-A28B-09	96903237	108315494	38048528	16	76986										
KLHL9	0	genome.wustl.edu	37	chr9	21333117	21333117	+	Frame_Shift_Del	DEL	G	G	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gaatgccaccaagtgactctGgaagatcaaaaactttatgc							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	9	21333117	21333117	G	-	DEL	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	frame_shift_del	c.1742	p.P581fs	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	65	0	0	19	4	17.39	-	-	-	-	21333117	G	-	21333117	7	5	971	1	0	1	0	1	0	0	0	0	8449	1348	47	0	115	0	KLHL9	9	21333117	Frame_Shift_Del	DEL	G	TCGA-OL-A5S0-01A-11D-A28B-09		21333117	119880314	17	76987										
ZFP37	0	genome.wustl.edu	37	chr9	115805355	115805355	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ttgattacattcaaagggacTttcacctgtatgagttctca	7	8	3	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	9	115805355	115805355	T	G	SNP	ZFP37	ENST00000553380	human	ensembl	69_37n	-1	known	missense	c.1588	p.S530R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866	56	0	0	35	4	10.26	-	-	-	G	115805355	T	G	115805355	3	3	971	1	0	0	0	0	1	0	0	0	17744	1609	56	5	353	5	ZFP37	9	115805355	Missense_Mutation	SNP	T	TCGA-OL-A5S0-01A-11D-A28B-09	94472238	115805355	25408076	18	76988										
ASB13	0	genome.wustl.edu	37	chr10	5681084	5681084	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ttaggacgaagacccgccatGacaatggcgggaacgctgga	14	10	0	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	10	5681084	5681084	G	A	SNP	ASB13	ENST00000479033	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB13	HGNC	ENSG00000196372	66	0	0	41	9	18	-	-	-	A	5681084	G	A	5681084	1	1	971	0	1	0	0	0	0	0	0	0	1021	1305	45	2		2	ASB13	10	5681084	RNA	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		5681084	129853663	19	76989										
FAM22A	0	genome.wustl.edu	37	chr10	88988294	88988294	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	cctgtgaaggccgctcaggcGcagaccttggtcctaactca	11	14	2	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	10	88988294	88988294	G	A	SNP	FAM22A	ENST00000381707	human	ensembl	69_37n	1	known	silent	c.657	p.A219	0.006	NULL	NULL	-	no_errors	FAM22A	HGNC	ENSG00000184923	92	0	0	41	13	24.07	-	-	-	A	88988294	G	A	88988294	2	1	971	1	0	0	0	0	0	0	0	1	5585	1074	38	1		1	FAM22A	10	88988294	Silent	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	83307210	88988294	46546453	20	76990										
OR5P2	0	genome.wustl.edu	37	chr11	7818269	7818269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	agtttacaagcatgttgggtGtgacagaagatgaataggcc	13	5	0	4			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	11	7818269	7818269	G	A	SNP	OR5P2	ENST00000329434	human	ensembl	69_37n	-1	known	missense	c.221	p.T74I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	49	0	0	24	11	31.43	-	-	-	A	7818269	G	A	7818269	3	1	971	1	0	0	0	0	1	0	0	0	11251	1377	48	4	751	4	OR5P2	11	7818269	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		7818269	127188247	21	76991										
SART1	0	genome.wustl.edu	37	chr11	65745270	65745270	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gtacagccggagggaggaatAccgaggcttcacacaggact	14	10	1	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	11	65745270	65745270	A	G	SNP	SART1	ENST00000312397	human	ensembl	69_37n	1	known	missense	c.2072	p.Y691C	1.000	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	67	0	0	23	6	20.69	-	-	-	G	65745270	A	G	65745270	3	3	971	1	0	0	0	0	1	0	0	0	13933	391	14	5	2138	5	SART1	11	65745270	Missense_Mutation	SNP	A	TCGA-OL-A5S0-01A-11D-A28B-09	57927001	65745270	69261246	22	76992										
CD3G	0	genome.wustl.edu	37	chr11	118220684	118220684	+	Frame_Shift_Del	DEL	A	A	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ccactccaagtgtattacagAagtatgtaatcccctttggt							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	11	118220684	118220684	A	-	DEL	CD3G	ENST00000532917	human	ensembl	69_37n	1	known	frame_shift_del	c.306	p.M103fs	1.000	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654	32	0	0	10	2	16.67	-	-	-	-	118220684	A	-	118220684	7	5	971	1	0	1	0	1	0	0	0	0	3042	260	9	0	316	0	CD3G	11	118220684	Frame_Shift_Del	DEL	A	TCGA-OL-A5S0-01A-11D-A28B-09	52475414	118220684	16785832	23	76993										
PZP	0	genome.wustl.edu	37	chr12	9333694	9333694	+	Frame_Shift_Del	DEL	G	G	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gcaggtgggcatgtgaggctGggggactttgtgctgggctg							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	12	9333694	9333694	G	-	DEL	PZP	ENST00000261336	human	ensembl	69_37n	-1	known	frame_shift_del	c.1724	p.P575fs	0.737	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838	58	0	0	25	16	39.02	-	-	-	-	9333694	G	-	9333694	7	5	971	1	0	1	0	1	0	0	0	0	12952	1348	47	0	2812	0	PZP	12	9333694	Frame_Shift_Del	DEL	G	TCGA-OL-A5S0-01A-11D-A28B-09		9333694	124518201	24	76994										
TMEM30B	0	genome.wustl.edu	37	chr14	61748417	61748417	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ctggaggcttgaagatttcaGatccttaatcctctgttatt	8	8	2	3			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	14	61748417	61748417	G	A	SNP	TMEM30B	ENST00000554497	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM30B	HGNC	ENSG00000182107	86	0	0	21	11	34.38	-	-	-	A	61748417	G	A	61748417	1	1	971	0	1	0	0	0	0	0	0	0	16249	957	33	2		2	TMEM30B	14	61748417	RNA	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		61748417	45601123	25	76995										
TMEM87A	0	genome.wustl.edu	37	chr15	42564278	42564278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	cacacttcaggaagatagtgGtatttctgaagaggatcttt	10	6	3	3			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	15	42564278	42564278	G	A	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.188	p.T63I	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	47	0	0	13	5	27.78	-	-	-	A	42564278	G	A	42564278	3	1	971	1	0	0	0	0	1	0	0	0	16305	1261	44	4	1601	4	TMEM87A	15	42564278	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		42564278	59967114	26	76996										
CLDN6	0	genome.wustl.edu	37	chr16	3065758	3065758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	caagccgaacagggccacaaGgagggcgatgacacagaggg	16	10	0	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	16	3065758	3065758	G	A	SNP	CLDN6	ENST00000328796	human	ensembl	69_37n	-1	known	missense	c.265	p.L89F	0.300	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697	92	0	0	32	12	27.27	-	-	-	A	3065758	G	A	3065758	3	1	971	1	0	0	0	0	1	0	0	0	3519	1000	35	4	401	4	CLDN6	16	3065758	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		3065758	87288995	27	76997										
CHST5	0	genome.wustl.edu	37	chr16	75564025	75564025	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tccatcaggtagaagacgtcGgggtgctggctgaagagctg	16	8	1	4			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	16	75564025	75564025	G	A	SNP	CHST5	ENST00000541075	human	ensembl	69_37n	-1	known	silent	c.276	p.P92	0.391	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702	72	0	0	32	5	13.51	-	-	-	A	75564025	G	A	75564025	2	1	971	1	0	0	0	0	0	0	0	1	3436	1103	39	1		1	CHST5	16	75564025	Silent	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	72498267	75564025	14790728	28	76998										
GFAP	0	genome.wustl.edu	37	chr17	42990695	42990695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tggacgccattgcctcatacTgcgtgcggatctctttcagg	11	12	3	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	17	42990695	42990695	T	G	SNP	GFAP	ENST00000253408	human	ensembl	69_37n	-1	known	missense	c.722	p.Q241P	1.000	pfam_F	pfam_F	-	no_errors	GFAP	HGNC	ENSG00000131095	39	0	0	15	5	25	-	-	-	G	42990695	T	G	42990695	3	3	971	1	0	0	0	0	1	0	0	0	6389	1580	55	5	729	5	GFAP	17	42990695	Missense_Mutation	SNP	T	TCGA-OL-A5S0-01A-11D-A28B-09		42990695	38204515	29	76999										
TCEB3B	0	genome.wustl.edu	37	chr18	44561453	44561453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tctctggcaaagtcgcccacGtgctggtgcttccgcaggcg	13	14	1	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	18	44561453	44561453	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	silent	c.183	p.H61	0.000	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	42	0	0	13	15	53.57	-	-	-	A	44561453	G	A	44561453	2	1	971	1	0	0	0	0	0	0	0	1	15777	1136	40	1		1	TCEB3B	18	44561453	Silent	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09		44561453	33515795	30	77000										
FSD1	0	genome.wustl.edu	37	chr19	4323007	4323007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	cacgctgatcgacggcggggAgcattactgggaggtgcgct	17	10	0	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	19	4323007	4323007	A	C	SNP	FSD1	ENST00000221856	human	ensembl	69_37n	1	known	missense	c.1064	p.E355A	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD1	HGNC	ENSG00000105255	67	0	0	23	17	41.46	-	-	-	C	4323007	A	C	4323007	3	2	971	1	0	0	0	0	1	0	0	0	6119	304	11	5	1106	5	FSD1	19	4323007	Missense_Mutation	SNP	A	TCGA-OL-A5S0-01A-11D-A28B-09		4323007	54805976	31	77001										
MUC16	0	genome.wustl.edu	37	chr19	9020071	9020071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ggctcagctcccagtacagcCgctctctgttgagtccaggg	12	14	2	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	19	9020071	9020071	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.37424	p.R12475Q	0.002	pfam_SEA,smart_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	193	0	0	78	34	30.36	-	-	-	T	9020071	C	T	9020071	3	4	971	1	0	0	0	0	1	0	0	0	10045	652	23	1	6355	1	MUC16	19	9020071	Missense_Mutation	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09	4697064	9020071	50108912	32	77002										
SLC44A2	0	genome.wustl.edu	37	chr19	10747113	10747114	+	Frame_Shift_Ins	INS	-	-	C													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	gggcctgcagatcttcaatgINSccttcatgttcttctggttg							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	19	10747113	10747114	-	C	INS	SLC44A2	ENST00000335757	human	ensembl	69_37n	1	known	frame_shift_ins	c.1348_1349	p.F451fs	0.998:0.993	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	78	0	0	28	16	36.36	-	-	-	C	10747114	-	C	10747113	7	5	971	1	0	1	1	0	0	0	0	0	14725	1319	46	0	1441	0	SLC44A2	19	10747113	Frame_Shift_Ins	INS	-	TCGA-OL-A5S0-01A-11D-A28B-09	1727042	10747113	48381870	33	77003										
GIPR	0	genome.wustl.edu	37	chr19	46181214	46181214	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ggcattctcctgtccaagctGaggacacggcaaatgcgctg	12	12	1	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	19	46181214	46181214	G	C	SNP	GIPR	ENST00000590918	human	ensembl	69_37n	1	known	silent	c.975	p.L325	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GIPR	HGNC	ENSG00000010310	113	0	0	65	10	13.33	-	-	-	C	46181214	G	C	46181214	2	2	971	1	0	0	0	0	0	0	0	1	6447	1277	45	2		2	GIPR	19	46181214	Silent	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	35434101	46181214	12947769	34	77004										
SULT2B1	0	genome.wustl.edu	37	chr19	49102586	49102586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	agcccaacaccagcctggagCgtgagcccagacccaactcc	9	18	0	2			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	19	49102586	49102586	C	T	SNP	SULT2B1	ENST00000201586	human	ensembl	69_37n	1	known	missense	c.1021	p.R341C	0.172	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT2B1	HGNC	ENSG00000088002	80	0	0	26	18	40	-	-	-	T	49102586	C	T	49102586	3	4	971	1	0	0	0	0	1	0	0	0	15473	768	27	1	1073	1	SULT2B1	19	49102586	Missense_Mutation	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09	2921372	49102586	10026397	35	77005										
COL6A1	0	genome.wustl.edu	37	chr21	47421114	47421114	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	agggcggtggaggggaggggCcagggcactggaggggaggg	27	5	0	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	21	47421114	47421114	C	T	SNP	COL6A1	ENST00000498614	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL6A1	HGNC	ENSG00000142156	15	0	0	10	4	28.57	-	-	-	T	47421114	C	T	47421114	1	4	971	0	1	0	0	0	0	0	0	0	3729	754	26	4		4	COL6A1	21	47421114	RNA	SNP	C	TCGA-OL-A5S0-01A-11D-A28B-09		47421114	708781	36	77006										
P2RY8	0	genome.wustl.edu	37	chrX	1585397	1585397	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	ggccaccgcgatcgccgggtTccgcagcatctgcagcgtcg	14	16	1	0			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	X	1585397	1585397	T	G	SNP	P2RY8	ENST00000381297	human	ensembl	69_37n	-1	known	missense	c.55	p.N19H	0.011	prints_Protea_act_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162	85	0	0	18	8	30.77	-	-	-	G	1585397	T	G	1585397	3	3	971	1	0	0	0	0	1	0	0	0	11428	1783	62	5	1028	5	P2RY8	23	1585397	Missense_Mutation	SNP	T	TCGA-OL-A5S0-01A-11D-A28B-09		1585397	153685163	37	77007										
NSDHL	0	genome.wustl.edu	37	chrX	152018963	152018963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	tctgggtgacctctgcagccGacaggtaatggaccatgcag	13	11	2	1			TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	X	152018963	152018963	G	A	SNP	NSDHL	ENST00000370274	human	ensembl	69_37n	1	known	missense	c.263	p.R88Q	0.396	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383	50	0	0	7	9	56.25	-	-	-	A	152018963	G	A	152018963	3	1	971	1	0	0	0	0	1	0	0	0	10743	1058	37	1	269	1	NSDHL	23	152018963	Missense_Mutation	SNP	G	TCGA-OL-A5S0-01A-11D-A28B-09	150433566	152018963	3251597	38	77008										
TAZ	0	genome.wustl.edu	37	chrX	153648448	153648448	+	Frame_Shift_Del	DEL	G	G	-													0.128205128205128	5	0.284157523808243	2.04545454545455	5.45454545454545	1.44385026737968	1	1	0	atgtcggtgagcctggggacGgggacagagagatggcatct							TCGA-OL-A5S0-01A-11D-A28B-09	TCGA-OL-A5S0-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	972f9c5a-5366-41b2-8d67-2b50008c8bba	7b264aa3-b120-4e6d-ae14-4ac33fc2d620	X	153648448	153648448	G	-	DEL	TAZ	ENST00000369776	human	ensembl	69_37n	1	putative	frame_shift_del	c.454	p.D153fs	0.000	NULL	pfam_Acyltransferase,prints_Tafazzin	-	no_errors	TAZ	HGNC	ENSG00000102125	125	0	0	38	17	30.36	-	-	-	-	153648448	G	-	153648448	7	5	971	1	0	1	0	1	0	0	0	0	15688	1131	39	0		0	TAZ	23	153648448	Frame_Shift_Del	DEL	G	TCGA-OL-A5S0-01A-11D-A28B-09	1629485	153648448	1622112	39	77009										
EPS15	0	genome.wustl.edu	37	chr1	51906092	51906092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	gaaatctgcaacaggacttgAtcctatgatgttctaaaaac	7	8	2	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	1	51906092	51906092	A	G	SNP	EPS15	ENST00000371733	human	ensembl	69_37n	-1	known	missense	c.967	p.S323P	1.000	NULL	smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832	50	0	0	32	9	21.95	-	-	-	G	51906092	A	G	51906092	3	3	972	1	0	0	0	0	1	0	0	0	5229	333	12	5	1877	5	EPS15	1	51906092	Missense_Mutation	SNP	A	TCGA-OL-A66H-01A-11D-A29N-09		51906092	197344529	1	77010										
APCS	0	genome.wustl.edu	37	chr1	159557749	159557749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	ttggatctctgtcctcaccaGcctcctggaagcctttgctc	8	15	2	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	1	159557749	159557749	G	A	SNP	APCS	ENST00000255040	human	ensembl	69_37n	1	known	missense	c.38	p.S13N	0.000	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	APCS	HGNC	ENSG00000132703	46	0	0	30	16	34.78	-	-	-	A	159557749	G	A	159557749	3	1	972	1	0	0	0	0	1	0	0	0	768	971	34	4	40	4	APCS	1	159557749	Missense_Mutation	SNP	G	TCGA-OL-A66H-01A-11D-A29N-09	107651657	159557749	89692872	2	77011										
FMN2	0	genome.wustl.edu	37	chr1	240370194	240370194	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	accaaaatagctgaactagaGaggcagtatcctgccctgga	10	10	0	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	1	240370194	240370194	G	A	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	1	known	silent	c.2082	p.E694	1.000	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	31	0	0	26	14	35	-	-	-	A	240370194	G	A	240370194	2	1	972	1	0	0	0	0	0	0	0	1	5996	933	33	2		2	FMN2	1	240370194	Silent	SNP	G	TCGA-OL-A66H-01A-11D-A29N-09	80812445	240370194	8880427	3	77012										
PPARG	0	genome.wustl.edu	37	chr3	12447485	12447485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	agtccgctgacctccgggccCtggcaaaacatttgtatgac	10	13	0	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	3	12447485	12447485	C	G	SNP	PPARG	ENST00000287820	human	ensembl	69_37n	1	known	missense	c.724	p.L242V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	34	0	0	19	10	34.48	-	-	-	G	12447485	C	G	12447485	3	3	972	1	0	0	0	0	1	0	0	0	12372	680	24	4	742	4	PPARG	3	12447485	Missense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		12447485	185574945	4	77013										
SPARCL1	0	genome.wustl.edu	37	chr4	88411538	88411538	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	cataggtctgattgtcagtgCcacaaacctatggaagataa	9	8	2	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	4	88411538	88411538	C	G	SNP	SPARCL1	ENST00000282470	human	ensembl	69_37n	-1	known	missense	c.1418	p.G473A	1.000	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Prot_inh_Kazal,pirsf_SPARC-like_p1,pfscan_EF_HAND_2	-	no_errors	SPARCL1	HGNC	ENSG00000152583	42	0	0	26	11	29.73	-	-	-	G	88411538	C	G	88411538	3	3	972	1	0	0	0	0	1	0	0	0	15087	739	26	4	596	4	SPARCL1	4	88411538	Missense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		88411538	102742738	5	77014										
LMBRD2	0	genome.wustl.edu	37	chr5	36114621	36114621	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	aaaactttcatggaacccatAatctgaagagcaagaaaaaa	6	7	2	3			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	5	36114621	36114621	A	T	SNP	LMBRD2	ENST00000296603	human	ensembl	69_37n	-1	known	silent	c.1545	p.I515	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD2	HGNC	ENSG00000164187	31	0	0	16	5	23.81	-	-	-	T	36114621	A	T	36114621	2	4	972	1	0	0	0	0	0	0	0	1	8899	358	13	5		5	LMBRD2	5	36114621	Silent	SNP	A	TCGA-OL-A66H-01A-11D-A29N-09		36114621	144800639	6	77015										
BTN1A1	0	genome.wustl.edu	37	chr6	26505349	26505349	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	gtggctgcttcagtgatcatCagagacacttctgcgaaaaa	10	9	4	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	6	26505349	26505349	C	A	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	silent	c.624	p.I208	0.005	pfam_CD80_C2-set,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	33	0	0	23	4	14.81	-	-	-	A	26505349	C	A	26505349	2	1	972	1	0	0	0	0	0	0	0	1	1568	816	29	2		2	BTN1A1	6	26505349	Silent	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		26505349	144609718	7	77016										
IRAK1BP1	0	genome.wustl.edu	37	chr6	79577332	79577332	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	cctccgacccgagtgttcgtGgaactggttccctgggctga	13	13	0	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	6	79577332	79577332	G	A	SNP	IRAK1BP1	ENST00000369940	human	ensembl	69_37n	1	known	silent	c.39	p.V13	0.998	NULL	pfam_DUF541	-	no_errors	IRAK1BP1	HGNC	ENSG00000146243	29	0	0	30	14	31.82	-	-	-	A	79577332	G	A	79577332	2	1	972	1	0	0	0	0	0	0	0	1	7876	1335	47	4		4	IRAK1BP1	6	79577332	Silent	SNP	G	TCGA-OL-A66H-01A-11D-A29N-09	53071983	79577332	91537735	8	77017										
MGAM	0	genome.wustl.edu	37	chr7	141794453	141794453	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	cagcctcttcggcatatcctAtgtgagtgtccttgggatcc	10	12	1	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	7	141794453	141794453	A	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	1	known	missense	c.4652	p.Y1551F	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	74	0	0	114	13	10.24	-	-	-	T	141794453	A	T	141794453	3	4	972	1	0	0	0	0	1	0	0	0	9612	463	16	5	4802	5	MGAM	7	141794453	Missense_Mutation	SNP	A	TCGA-OL-A66H-01A-11D-A29N-09		141794453	17344210	9	77018										
MLL3	0	genome.wustl.edu	37	chr7	151902226	151902226	+	Frame_Shift_Del	DEL	C	C	-													0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	gtaactgctcggaaatagagCctgaggaatcttttctgatc							TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	7	151902226	151902226	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.3926	p.G1309fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	103	0	0	104	36	25.35	-	-	-	-	151902226	C	-	151902226	7	5	972	1	0	1	0	1	0	0	0	0	9693	739	26	0	10949	0	MLL3	7	151902226	Frame_Shift_Del	DEL	C	TCGA-OL-A66H-01A-11D-A29N-09	10107773	151902226	7236437	10	77019										
MLL3	0	genome.wustl.edu	37	chr7	151949699	151949699	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	taacacttcccacagaagggAcataagttatcctgctgttg	8	10	0	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	7	151949699	151949699	A	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.1401	p.C467*	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	35	0	0	23	24	51.06	-	-	-	T	151949699	A	T	151949699	4	4	972	1	0	0	0	0	0	1	0	0	9693	273	10	5	13534	5	MLL3	7	151949699	Nonsense_Mutation	SNP	A	TCGA-OL-A66H-01A-11D-A29N-09	47473	151949699	7188964	11	77020										
RP1L1	0	genome.wustl.edu	37	chr8	10464643	10464643	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	tggcatcagggctccttgtgTctccaagtacatggtcattt	10	10	3	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	8	10464643	10464643	T	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.6965	p.D2322V	0.002	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	52	0	0	32	9	21.95	-	-	-	A	10464643	T	A	10464643	3	1	972	1	0	0	0	0	1	0	0	0	13619	1667	58	5	241	5	RP1L1	8	10464643	Missense_Mutation	SNP	T	TCGA-OL-A66H-01A-11D-A29N-09		10464643	135899379	12	77021										
TMEM26	0	genome.wustl.edu	37	chr10	63170376	63170376	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	ggtcatcagtatgagacgcaCgacaaggaaggggccatctt	13	9	3	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	10	63170376	63170376	C	G	SNP	TMEM26	ENST00000399298	human	ensembl	69_37n	-1	known	missense	c.811	p.V271L	0.981	pfam_Transmembrane_26	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932	31	0	0	28	17	37.78	-	-	-	G	63170376	C	G	63170376	3	3	972	1	0	0	0	0	1	0	0	0	16246	536	19	3	299	3	TMEM26	10	63170376	Missense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		63170376	72364371	13	77022										
ZNF503	0	genome.wustl.edu	37	chr10	77161112	77161112	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	tctgcaccgccgcctccgccTccgccgccgccgccgccgct	10	25	1	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	10	77161112	77161112	T	G	SNP	ZNF503	ENST00000372524	human	ensembl	69_37n	-1	known	silent	c.66	p.G22	0.998	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF503	HGNC	ENSG00000165655	13	0	0	8	4	33.33	-	-	-	G	77161112	T	G	77161112	2	3	972	1	0	0	0	0	0	0	0	1	18047	1538	54	5		5	ZNF503	10	77161112	Silent	SNP	T	TCGA-OL-A66H-01A-11D-A29N-09	13990736	77161112	58373635	14	77023										
MUC2	0	genome.wustl.edu	37	chr11	1092290	1092291	+	Frame_Shift_Del	DEL	AG	AG	-													0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	catttgcaagaatgaagaccAgtttggaaatggaccatttg							TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	11	1092290	1092291	AG	-	DEL	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	frame_shift_del	c.4109_4110	p.Q1370fs	0.993:0.833	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	105	0	0	83	17	16.83	-	-	-	-	1092291	AG	-	1092290	7	5	972	1	0	1	0	1	0	0	0	0	10047	188	7	0	4227	0	MUC2	11	1092290	Frame_Shift_Del	DEL	AG	TCGA-OL-A66H-01A-11D-A29N-09		1092290	133914226	15	77024										
AMPD3	0	genome.wustl.edu	37	chr11	10517183	10517183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	cacggctctccatctacggcCgcagtcctgaggagtggccc	12	16	2	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	11	10517183	10517183	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	missense	c.1333	p.R445C	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	33	0	0	51	6	10.53	-	-	-	T	10517183	C	T	10517183	3	4	972	1	0	0	0	0	1	0	0	0	587	652	23	1	1414	1	AMPD3	11	10517183	Missense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09	9424893	10517183	124489333	16	77025										
PGR	0	genome.wustl.edu	37	chr11	100922235	100922235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	ctccatcctagaccaaacacCattaagctcatccaagaata	3	14	1	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	11	100922235	100922235	C	A	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.2277	p.M759I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	23	0	0	15	3	16.67	-	-	-	A	100922235	C	A	100922235	3	1	972	1	0	0	0	0	1	0	0	0	11879	594	21	4	540	4	PGR	11	100922235	Missense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09	90405052	100922235	34084281	17	77026										
KIAA1704	0	genome.wustl.edu	37	chr13	45580422	45580422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	ctcctggatttaaaaagcagGatgattctcctccaaggtga	9	9	1	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	13	45580422	45580422	G	A	SNP	KIAA1704	ENST00000361121	human	ensembl	69_37n	1	known	missense	c.307	p.D103N	1.000	NULL	pfam_DUF3752	-	no_errors	KIAA1704	HGNC	ENSG00000133114	57	0	0	46	15	24.59	-	-	-	A	45580422	G	A	45580422	3	1	972	1	0	0	0	0	1	0	0	0	8304	1174	41	2	317	2	KIAA1704	13	45580422	Missense_Mutation	SNP	G	TCGA-OL-A66H-01A-11D-A29N-09		45580422	69589456	18	77027										
CARS2	0	genome.wustl.edu	37	chr13	111296743	111296743	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	aggacctacctgttgatttgCcagagaaattccaacagttt	8	9	0	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	13	111296743	111296743	C	T	SNP	CARS2	ENST00000487253	human	ensembl	69_37n	-1	known	nonsense	c.486	p.W162*	0.004	NULL	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Lys-tRNA-synth_I	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CARS2	HGNC	ENSG00000134905	22	0	0	24	4	14.29	-	-	-	T	111296743	C	T	111296743	4	4	972	1	0	0	0	0	0	1	0	0	2683	739	26	4	301	4	CARS2	13	111296743	Nonsense_Mutation	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09	65716321	111296743	3873135	19	77028										
SLC47A2	0	genome.wustl.edu	37	chr17	19584880	19584880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	tcattctgaccacaaaggtcAgaaggatgcccagtggtagg	12	9	3	2			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	17	19584880	19584880	A	G	SNP	SLC47A2	ENST00000325411	human	ensembl	69_37n	-1	known	missense	c.1376	p.L459P	0.995	tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638	55	0	0	39	20	33.9	-	-	-	G	19584880	A	G	19584880	3	3	972	1	0	0	0	0	1	0	0	0	14737	188	7	5	448	5	SLC47A2	17	19584880	Missense_Mutation	SNP	A	TCGA-OL-A66H-01A-11D-A29N-09		19584880	61610330	20	77029										
CARD14	0	genome.wustl.edu	37	chr17	78166016	78166016	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	caattttctgtgtgtgtatgTatgtgtgtgtattatacatt	9	3	1	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	17	78166016	78166016	T	C	SNP	CARD14	ENST00000574148	human	ensembl	69_37n	1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	CARD14	HGNC	ENSG00000141527	8	0	0	3	4	57.14	-	-	-	C	78166016	T	C	78166016	5	2	972	1	0	0	0	0	0	0	1	0	2671	1653	57	5		5	CARD14	17	78166016	Splice_Site	SNP	T	TCGA-OL-A66H-01A-11D-A29N-09	58581136	78166016	3029194	21	77030										
OR1M1	0	genome.wustl.edu	37	chr19	9204371	9204371	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	tggtcggcgccctctgggcgTtttcctgcttcatctcactc	10	15	3	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	19	9204371	9204371	T	A	SNP	OR1M1	ENST00000429566	human	ensembl	69_37n	1	known	missense	c.451	p.F151I	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929	39	0	0	18	16	47.06	-	-	-	A	9204371	T	A	9204371	3	1	972	1	0	0	0	0	1	0	0	0	11041	1725	60	5	453	5	OR1M1	19	9204371	Missense_Mutation	SNP	T	TCGA-OL-A66H-01A-11D-A29N-09		9204371	49924612	22	77031										
DLGAP4	0	genome.wustl.edu	37	chr20	35155567	35155567	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	agccaactttcaaattgacgCatacaagggctcacaatttg	7	10	2	1			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	20	35155567	35155567	C	T	SNP	DLGAP4	ENST00000475894	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	DLGAP4	HGNC	ENSG00000080845	25	0	0	17	10	37.04	-	-	-	T	35155567	C	T	35155567	1	4	972	0	1	0	0	0	0	0	0	0	4598	725	25	4		4	DLGAP4	20	35155567	RNA	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		35155567	27869953	23	77032										
NUP50	0	genome.wustl.edu	37	chr22	45574234	45574234	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0416666666666667	1	0.98427669967513	0.732786885245902	0	1.04683840749415	1	1	0	gcttccagtaaagcttgtgtCggaaatgcctatcacaagca	9	10	1	0			TCGA-OL-A66H-01A-11D-A29N-09	TCGA-OL-A66H-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	069ecb6d-ce1e-4091-a953-a968d851c0d7	6301b1ed-a989-4fea-994c-96fcd75a42d9	22	45574234	45574234	C	A	SNP	NUP50	ENST00000347635	human	ensembl	69_37n	1	known	silent	c.456	p.V152	0.000	pfam_NUP2/50/61	pfam_NUP2/50/61,pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	NUP50	HGNC	ENSG00000093000	105	0	0	72	19	20.88	-	-	-	A	45574234	C	A	45574234	2	1	972	1	0	0	0	0	0	0	0	1	10839	871	31	3		3	NUP50	22	45574234	Silent	SNP	C	TCGA-OL-A66H-01A-11D-A29N-09		45574234	5730332	24	77033										
ZBTB48	0	genome.wustl.edu	37	chr1	6648359	6648359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	cagcctggacaagcacaaccGcacccacaccggggaaaggc	11	16	0	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	6648359	6648359	G	A	SNP	ZBTB48	ENST00000377674	human	ensembl	69_37n	1	known	missense	c.1538	p.R513H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859	14	0	0	13	5	27.78	-	-	-	A	6648359	G	A	6648359	3	1	973	1	0	0	0	0	1	0	0	0	17645	1087	38	1	1568	1	ZBTB48	1	6648359	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		6648359	242602262	1	77034										
KCNQ4	0	genome.wustl.edu	37	chr1	41303356	41303356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gggtggaccaaattgtgggtCgggggcccggggacaggaag	21	7	0	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	41303356	41303356	C	T	SNP	KCNQ4	ENST00000347132	human	ensembl	69_37n	1	known	missense	c.1765	p.R589W	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013	48	0	0	29	5	14.71	-	-	-	T	41303356	C	T	41303356	3	4	973	1	0	0	0	0	1	0	0	0	8139	875	31	1	1815	1	KCNQ4	1	41303356	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	34654997	41303356	207947265	2	77035										
NRD1	0	genome.wustl.edu	37	chr1	52257716	52257716	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gtggccctgccagctgacttAcccaagggtctgcttggttc	12	13	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	52257716	52257716	A	C	SNP	NRD1	ENST00000354831	human	ensembl	69_37n	-1	known	splice_site	c.3080+2	e28+2	1.000	-	-	-	no_errors	NRD1	HGNC	ENSG00000078618	34	0	0	37	5	11.9	-	-	-	C	52257716	A	C	52257716	5	2	973	1	0	0	0	0	0	0	1	0	10718	405	14	5	601	5	NRD1	1	52257716	Splice_Site	SNP	A	TCGA-OL-A66I-01A-21D-A29N-09	10954360	52257716	196992905	3	77036										
USP24	0	genome.wustl.edu	37	chr1	55619828	55619828	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	atgcacttgatgatgtagctCctcttgattgcttctttcac	7	10	3	3			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	55619828	55619828	C	T	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	silent	c.1776	p.R592	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	36	0	0	40	7	14.89	-	-	-	T	55619828	C	T	55619828	2	4	973	1	0	0	0	0	0	0	0	1	17152	854	30	2		2	USP24	1	55619828	Silent	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	3362112	55619828	193630793	4	77037										
C1orf112	0	genome.wustl.edu	37	chr1	169818727	169818727	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gaacaacataccttggaggcGtttactcagttcgctgaggt	11	9	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	169818727	169818727	G	C	SNP	C1orf112	ENST00000286031	human	ensembl	69_37n	1	known	silent	c.2145	p.A715	0.993	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460	42	0	0	80	9	10.11	-	-	-	C	169818727	G	C	169818727	2	2	973	1	0	0	0	0	0	0	0	1	2004	1132	40	3		3	C1orf112	1	169818727	Silent	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	114198899	169818727	79431894	5	77038										
LYST	0	genome.wustl.edu	37	chr1	235972478	235972478	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	cacacactgcaatgcaacagCaccgctcaggataataaaca	6	13	1	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	235972478	235972478	C	A	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.1640	p.C547F	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	21	0	0	29	8	21.62	-	-	-	A	235972478	C	A	235972478	3	1	973	1	0	0	0	0	1	0	0	0	9195	710	25	4	9961	4	LYST	1	235972478	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	66153751	235972478	13278143	6	77039										
RGS7	0	genome.wustl.edu	37	chr1	240963987	240963987	+	Frame_Shift_Del	DEL	T	T	-													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ccctcagtgttggtgtacagTttttatggcatgggaaaata							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	1	240963987	240963987	T	-	DEL	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	frame_shift_del	c.1448	p.N483fs	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	65	0	0	52	9	14.75	-	-	-	-	240963987	T	-	240963987	7	5	973	1	0	1	0	1	0	0	0	0	13394	1740	60	0		0	RGS7	1	240963987	Frame_Shift_Del	DEL	T	TCGA-OL-A66I-01A-21D-A29N-09	4991509	240963987	8286634	7	77040										
CRIM1	0	genome.wustl.edu	37	chr2	36623762	36623762	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ttaattgttttacagatgagAactggactgatgaccaactg	9	6	0	4			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	2	36623762	36623762	A	C	SNP	CRIM1	ENST00000280527	human	ensembl	69_37n	1	known	missense	c.337	p.N113H	1.000	NULL	pfam_VWF_C,pfam_Prot_inh_I15_antistasin-like,superfamily_Prot_inh_I14/15_hirudin/antisn,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	66	0	0	63	12	16	-	-	-	C	36623762	A	C	36623762	3	2	973	1	0	0	0	0	1	0	0	0	3903	246	9	5	343	5	CRIM1	2	36623762	Missense_Mutation	SNP	A	TCGA-OL-A66I-01A-21D-A29N-09		36623762	206575611	8	77041										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48809570	48809570	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	tgaaagctaaaatgaaccgcCgagcatgtctggggagttta	12	7	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	2	48809570	48809570	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	nonsense	c.1798	p.R600*	0.998	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	42	0	0	46	9	16.36	-	-	-	T	48809570	C	T	48809570	4	4	973	1	0	0	0	0	0	1	0	0	15408	644	23	1	1800	1	STON1-GTF2A1L	2	48809570	Nonsense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	12185808	48809570	194389803	9	77042										
LONRF2	0	genome.wustl.edu	37	chr2	100903452	100903452	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	tcatgcgatcctggagagacGcgaaccaggaaacagactgt	12	10	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	2	100903452	100903452	G	C	SNP	LONRF2	ENST00000393437	human	ensembl	69_37n	-1	known	missense	c.1994	p.A665G	0.391	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	31	0	0	38	9	19.15	-	-	-	C	100903452	G	C	100903452	3	2	973	1	0	0	0	0	1	0	0	0	8961	1087	38	3	278	3	LONRF2	2	100903452	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	52093882	100903452	142295921	10	77043										
FSIP2	0	genome.wustl.edu	37	chr2	186656657	186656657	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	aaactggaagggtttgccaaCggacatttagaaattttggg	12	5	0	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	2	186656657	186656657	C	T	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	silent	c.5061	p.N1687	0.966	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	10	0	0	14	5	26.32	-	-	-	T	186656657	C	T	186656657	2	4	973	1	0	0	0	0	0	0	0	1	6124	535	19	1		1	FSIP2	2	186656657	Silent	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	85753205	186656657	56542716	11	77044										
RBM5	0	genome.wustl.edu	37	chr3	50137998	50137998	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	tttcgccttcgtggagttttAtcacttgcaagatgctacca	8	10	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	3	50137998	50137998	A	G	SNP	RBM5	ENST00000347869	human	ensembl	69_37n	1	known	missense	c.443	p.Y148C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	48	0	0	45	15	25	-	-	-	G	50137998	A	G	50137998	3	3	973	1	0	0	0	0	1	0	0	0	13226	449	16	5	461	5	RBM5	3	50137998	Missense_Mutation	SNP	A	TCGA-OL-A66I-01A-21D-A29N-09		50137998	147884432	12	77045										
LMBRD2	0	genome.wustl.edu	37	chr5	36104192	36104192	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gcgagacatcgagagatatcGtccaccaggctgatacctaa	10	11	0	3			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	5	36104192	36104192	G	A	SNP	LMBRD2	ENST00000296603	human	ensembl	69_37n	-1	known	nonsense	c.2044	p.R682*	1.000	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD2	HGNC	ENSG00000164187	23	0	0	23	9	28.12	-	-	-	A	36104192	G	A	36104192	4	1	973	1	0	0	0	0	0	1	0	0	8899	1153	40	1	47	1	LMBRD2	5	36104192	Nonsense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		36104192	144811068	13	77046										
SEMA6A	0	genome.wustl.edu	37	chr5	115782950	115782950	+	Missense_Mutation	SNP	G	G	T													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gccctgctgcgtgatgggcaGgaccaccacgctggggatgt							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	5	115782950	115782950	G	T	SNP	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	missense	c.2503	p.L835M	1.000	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	47	0	0	32	9	21.95	-	-	-	T	115782950	G	T	115782950	3	4	973	1	0	0	0	0	1	0	0	0	14127	991	35	4	644	4	SEMA6A	5	115782950	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	79678758	115782950	65132310	14	77047	539	2								
SEMA6A	0	genome.wustl.edu	37	chr5	115782951	115782951	+	Missense_Mutation	SNP	G	G	T													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ccctgctgcgtgatgggcagGaccaccacgctggggatgtg							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	5	115782951	115782951	G	T	SNP	SEMA6A	ENST00000515129	human	ensembl	69_37n	-1	putative	missense	c.995	p.S332Y	0.998	NULL	pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SEMA6A	HGNC	ENSG00000092421	48	0	0	31	9	22.5	-	-	-	T	115782951	G	T	115782951	3	4	973	1	0	0	0	0	1	0	0	0	14127	1161	41	2	645	2	SEMA6A	5	115782951	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	1	115782951	65132309	15	77048	539	2								
PCDHA13	0	genome.wustl.edu	37	chr5	140263105	140263105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gcgccctggaccgcgagagcGtatcagcctatgaactggtg	14	12	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	5	140263105	140263105	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	69_37n	1	known	missense	c.1252	p.V418I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	95	0	0	53	14	20.9	-	-	-	A	140263105	G	A	140263105	3	1	973	1	0	0	0	0	1	0	0	0	11596	1145	40	1	1254	1	PCDHA13	5	140263105	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	24480154	140263105	40652155	16	77049										
NXPH1	0	genome.wustl.edu	37	chr7	8790942	8790942	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	caagtttaagaaaatgtttgGatggggcgattttcattcca	10	5	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	7	8790942	8790942	G	C	SNP	NXPH1	ENST00000405863	human	ensembl	69_37n	1	known	missense	c.359	p.G120A	1.000	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH1	HGNC	ENSG00000122584	28	0	0	18	9	33.33	-	-	-	C	8790942	G	C	8790942	3	2	973	1	0	0	0	0	1	0	0	0	10863	1174	41	2	365	2	NXPH1	7	8790942	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		8790942	150347721	17	77050										
DLX5	0	genome.wustl.edu	37	chr7	96651538	96651538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	cgaggcggccagctcggcgcGttccggcaaggcgaggtact	17	13	0	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	7	96651538	96651538	G	A	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	missense	c.499	p.R167C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	42	0	0	35	19	35.19	-	-	-	A	96651538	G	A	96651538	3	1	973	1	0	0	0	0	1	0	0	0	4610	1145	40	1	378	1	DLX5	7	96651538	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	87860596	96651538	62487125	18	77051										
ZAN	0	genome.wustl.edu	37	chr7	100383642	100383642	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ggcaagagctgggtctccagCggttgcacggagaagtgtgt	17	8	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	7	100383642	100383642	C	G	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.6855	p.S2285R	0.000	smart_VWC_out	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	30	0	0	40	12	23.08	-	-	-	G	100383642	C	G	100383642	3	3	973	1	0	0	0	0	1	0	0	0	17610	767	27	3	6999	3	ZAN	7	100383642	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	3732104	100383642	58755021	19	77052										
GATA4	0	genome.wustl.edu	37	chr8	11606457	11606457	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	acgacttctcagaaggcagaGagtgtgtcaactgtggggct	14	8	2	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	8	11606457	11606457	G	C	SNP	GATA4	ENST00000335135	human	ensembl	69_37n	1	known	missense	c.646	p.E216Q	1.000	smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574	43	0	0	36	31	46.27	-	-	-	C	11606457	G	C	11606457	3	2	973	1	0	0	0	0	1	0	0	0	6306	943	33	2	652	2	GATA4	8	11606457	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		11606457	134757565	20	77053										
WDR5	0	genome.wustl.edu	37	chr9	137013427	137013427	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	taggttcattttaatcgtgaTggatccttgatagtttcaag	9	5	2	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	9	137013427	137013427	T	C	SNP	WDR5	ENST00000358625	human	ensembl	69_37n	1	known	silent	c.546	p.D182	1.000	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF2A_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR5	HGNC	ENSG00000196363	67	0	0	61	8	11.59	-	-	-	C	137013427	T	C	137013427	2	2	973	1	0	0	0	0	0	0	0	1	17400	1461	51	5		5	WDR5	9	137013427	Silent	SNP	T	TCGA-OL-A66I-01A-21D-A29N-09		137013427	4200004	21	77054										
C8G	0	genome.wustl.edu	37	chr9	139841102	139841102	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	acccctgccttgggcccccaGgcttctgcgaggctgcagac	12	17	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	9	139841102	139841102	G	T	SNP	C8G	ENST00000224181	human	ensembl	69_37n	1	known	splice_site	c.557-1	e6-1	0.999	-	-	-	no_errors	C8G	HGNC	ENSG00000176919	48	0	0	59	9	13.24	-	-	-	T	139841102	G	T	139841102	5	4	973	1	0	0	0	0	0	0	1	0	2441	1014	35	4	578	4	C8G	9	139841102	Splice_Site	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	2827675	139841102	1372329	22	77055										
TAS2R43	0	genome.wustl.edu	37	chr12	11244634	11244634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ttcaacacagttgaataccaGtttaataataatacccagag	5	8	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	12	11244634	11244634	G	A	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	silent	c.195	p.N65	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	29	0	0	23	6	20.69	-	-	-	A	11244634	G	A	11244634	2	1	973	1	0	0	0	0	0	0	0	1	15673	1020	36	4		4	TAS2R43	12	11244634	Silent	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		11244634	122607261	23	77056			1	126		3	3	54	N	T_G	1.968447e-09
TAS2R43	0	genome.wustl.edu	37	chr12	11244646	11244646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gaataccagtttaataataaTacccagagcaaaccaactct	4	10	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	12	11244646	11244646	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	silent	c.183	p.V61	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	27	0	0	22	6	21.43	-	-	-	C	11244646	T	C	11244646	2	2	973	1	0	0	0	0	0	0	0	1	15673	1393	49	5		5	TAS2R43	12	11244646	Silent	SNP	T	TCGA-OL-A66I-01A-21D-A29N-09	12	11244646	122607249	24	77057			1	126		3	3	54	N	T_G	1.968447e-09
TAS2R43	0	genome.wustl.edu	37	chr12	11244687	11244687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ggagaccgccagagcagtgaGaatttggtcagcaaaggaga	15	7	1	4			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	12	11244687	11244687	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	69_37n	-1	known	missense	c.142	p.L48V	0.022	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	26	0	0	29	6	17.14	-	-	-	C	11244687	G	C	11244687	3	2	973	1	0	0	0	0	1	0	0	0	15673	942	33	2	791	2	TAS2R43	12	11244687	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	41	11244687	122607208	25	77058			1	126		3	3	54	N	T_G	1.968447e-09
SPATA13	0	genome.wustl.edu	37	chr13	24860471	24860471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gttctggaagcctccaacaaGgactggtggtggggccgcag	16	10	1	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	13	24860471	24860471	G	A	SNP	SPATA13	ENST00000382141	human	ensembl	69_37n	1	known	missense	c.2167	p.G723R	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SPATA13	HGNC	ENSG00000182957	36	0	0	25	11	30.56	-	-	-	A	24860471	G	A	24860471	3	1	973	1	0	0	0	0	1	0	0	0	15091	991	35	4	2439	4	SPATA13	13	24860471	Missense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		24860471	90309407	26	77059										
PABPC3	0	genome.wustl.edu	37	chr13	25671129	25671129	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gaaaacaaatttacgttggtCgagctcagaaaaaagtggaa	10	5	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	13	25671129	25671129	C	T	SNP	PABPC3	ENST00000281589	human	ensembl	69_37n	1	known	nonsense	c.793	p.R265*	1.000	pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	49	0	0	53	8	13.11	-	-	-	T	25671129	C	T	25671129	4	4	973	1	0	0	0	0	0	1	0	0	11438	876	31	1	795	1	PABPC3	13	25671129	Nonsense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	810658	25671129	89498749	27	77060										
C16orf71	0	genome.wustl.edu	37	chr16	4790474	4790474	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	tctgtgaaccgccgggccctCcgacaggagagaaggaagat	14	11	1	3			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	16	4790474	4790474	C	T	SNP	C16orf71	ENST00000299320	human	ensembl	69_37n	1	known	silent	c.597	p.L199	0.952	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246	33	0	0	35	6	14.63	-	-	-	T	4790474	C	T	4790474	2	4	973	1	0	0	0	0	0	0	0	1	1843	842	30	2		2	C16orf71	16	4790474	Silent	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09		4790474	85564279	28	77061										
CYLD	0	genome.wustl.edu	37	chr16	50783709	50783709	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	aatgcagcgttacagacaaaCaaacacaaaagctccttaaa	5	10	0	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	16	50783709	50783709	C	G	SNP	CYLD	ENST00000311559	human	ensembl	69_37n	1	known	missense	c.100	p.Q34E	1.000	NULL	pfam_CAP-Gly_domain,pfam_Peptidase_C19,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19	-	no_errors	CYLD	HGNC	ENSG00000083799	38	0	0	25	5	16.67	-	-	-	G	50783709	C	G	50783709	3	3	973	1	0	0	0	0	1	0	0	0	4174	479	17	4	102	4	CYLD	16	50783709	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	45993235	50783709	39571044	29	77062										
TCF25	0	genome.wustl.edu	37	chr16	89967200	89967200	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ggcgctcaccatgttccctgGaggtgagtgagcgctgtgtc	15	11	1	2			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	16	89967200	89967200	G	A	SNP	TCF25	ENST00000562256	human	ensembl	69_37n	1	putative	nonsense	c.963	p.W321*	1.000	pfam_TCF25	pfam_TCF25	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF25	HGNC	ENSG00000141002	43	0	0	24	5	17.24	-	-	-	A	89967200	G	A	89967200	4	1	973	1	0	0	0	0	0	1	0	0	15788	1174	41	2	1425	2	TCF25	16	89967200	Nonsense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09	39183491	89967200	387553	30	77063										
TP53	0	genome.wustl.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	21	0	0	14	4	22.22	-	-	-	A	7574003	G	A	7574003	4	1	973	1	0	0	0	0	0	1	0	0	16477	1124	39	1	165	1	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-OL-A66I-01A-21D-A29N-09		7574003	73621207	31	77064										
MYH4	0	genome.wustl.edu	37	chr17	10354183	10354183	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	tagctgagaaaccatagcatCtttttcatctagctgtcgtg	8	9	3	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	17	10354183	10354183	C	G	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	missense	c.3895	p.D1299H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	68	0	0	68	12	15	-	-	-	G	10354183	C	G	10354183	3	3	973	1	0	0	0	0	1	0	0	0	10109	913	32	2	1972	2	MYH4	17	10354183	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	2780180	10354183	70841027	32	77065										
RAI1	0	genome.wustl.edu	37	chr17	17696487	17696487	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	actgcagccgcggtggccgcCgacaagtaccaccgaggcag	14	15	0	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	17	17696487	17696487	C	G	SNP	RAI1	ENST00000353383	human	ensembl	69_37n	1	known	silent	c.225	p.A75	0.005	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	36	0	0	25	11	30.56	-	-	-	G	17696487	C	G	17696487	2	3	973	1	0	0	0	0	0	0	0	1	13090	639	23	3		3	RAI1	17	17696487	Silent	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	7342304	17696487	63498723	33	77066										
TMED1	0	genome.wustl.edu	37	chr19	10943615	10943616	+	Frame_Shift_Del	DEL	AT	AT	-													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gggagggacccccaagtctcAtatgcacacaccctgctgcc							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	19	10943615	10943616	AT	-	DEL	TMED1	ENST00000591695	human	ensembl	69_37n	-1	putative	frame_shift_del	c.556_555	p.I185fs	0.003:0.000	NULL	pfam_GOLD,superfamily_GOLD	-	no_errors	TMED1	HGNC	ENSG00000099203	40	0	0	36	13	26.53	-	-	-	-	10943616	AT	-	10943615	7	5	973	1	0	1	0	1	0	0	0	0	16097	232	8	0		0	TMED1	19	10943615	Frame_Shift_Del	DEL	AT	TCGA-OL-A66I-01A-21D-A29N-09		10943615	48185368	34	77067										
KCTD15	0	genome.wustl.edu	37	chr19	34304928	34304928	+	RNA	DEL	C	C	-													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	acgacaggcccaaagatggaCcccccctggccttgtgacag							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	19	34304928	34304928	C	-	DEL	KCTD15	ENST00000592363	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	KCTD15	HGNC	ENSG00000153885	26	0	0	24	28	52.83	-	-	-	-	34304928	C	-	34304928	6	5	973	0	1	1	0	1	0	0	0	0	8156	522	18	0		0	KCTD15	19	34304928	RNA	DEL	C	TCGA-OL-A66I-01A-21D-A29N-09	23361313	34304928	24824055	35	77068										
LCA5L	0	genome.wustl.edu	37	chr21	40795074	40795075	+	Frame_Shift_Ins	INS	-	-	T													0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	aagtttcctagatagagttcINStttccttttcctgggatttc							TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	21	40795074	40795075	-	T	INS	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	frame_shift_ins	c.665_664	p.R222fs	0.296:0.317	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	80	0	0	66	34	34	-	-	-	T	40795075	-	T	40795074	7	5	973	1	0	1	1	0	0	0	0	0	8711	913	32	0	1371	0	LCA5L	21	40795074	Frame_Shift_Ins	INS	-	TCGA-OL-A66I-01A-21D-A29N-09		40795074	7334821	36	77069										
ZNF711	0	genome.wustl.edu	37	chrX	84520170	84520170	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	gagtacaccagtggacattcAgtagctggagtgcttgacca	12	9	1	1			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	X	84520170	84520170	A	C	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	1	known	silent	c.759	p.S253	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	50	0	0	66	8	10.81	-	-	-	C	84520170	A	C	84520170	2	2	973	1	0	0	0	0	0	0	0	1	18212	175	7	5		5	ZNF711	23	84520170	Silent	SNP	A	TCGA-OL-A66I-01A-21D-A29N-09		84520170	70750390	37	77070										
DCAF12L2	0	genome.wustl.edu	37	chrX	125298898	125298898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0810810810810811	3	0.855671264379963	1.09615384615385	2.92307692307692	0	0.1	0.5224358974359	0	ggggccggatgttctgctggCgctggcgcggatccaggaag	19	10	1	0			TCGA-OL-A66I-01A-21D-A29N-09	TCGA-OL-A66I-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	58314df9-cc1a-41b7-adb9-c74f43781912	854b2ea6-3de2-47bf-b7cd-b8de234014a9	X	125298898	125298898	C	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	69_37n	-1	known	missense	c.1010	p.R337H	0.964	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	51	0	0	46	31	40.26	-	-	-	T	125298898	C	T	125298898	3	4	973	1	0	0	0	0	1	0	0	0	4297	768	27	1	385	1	DCAF12L2	23	125298898	Missense_Mutation	SNP	C	TCGA-OL-A66I-01A-21D-A29N-09	40778728	125298898	29971662	38	77071										
KIAA0319L	0	genome.wustl.edu	37	chr1	35907883	35907883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcacagtccaagacaggattCccaaggcaacaacaatgaca	7	12	1	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	35907883	35907883	C	T	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.2834	p.G945E	1.000	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	55	0	0	25	15	37.5	-	-	-	T	35907883	C	T	35907883	3	4	974	1	0	0	0	0	1	0	0	0	8221	855	30	2	327	2	KIAA0319L	1	35907883	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		35907883	213342738	1	77072										
HEYL	0	genome.wustl.edu	37	chr1	40097235	40097235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tactgttgatgcggtctcgaCgccgtttctctatgatctaa	9	10	3	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	40097235	40097235	C	T	SNP	HEYL	ENST00000372852	human	ensembl	69_37n	-1	known	missense	c.164	p.R55H	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,pfam_Orange,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_Orange_subgr,pfscan_Orange,pfscan_HLH_DNA-bd	-	no_errors	HEYL	HGNC	ENSG00000163909	126	0	0	48	20	29.41	-	-	-	T	40097235	C	T	40097235	3	4	974	1	0	0	0	0	1	0	0	0	7131	536	19	1	834	1	HEYL	1	40097235	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	4189352	40097235	209153386	2	77073										
IGSF3	0	genome.wustl.edu	37	chr1	117142614	117142614	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ggaggtcctctccgccagtcGcgtccaggtgttgttgtagt	14	11	1	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	117142614	117142614	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	nonsense	c.2038	p.R680*	0.285	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	119	0	0	50	15	23.08	-	-	-	A	117142614	G	A	117142614	4	1	974	1	0	0	0	0	0	1	0	0	7655	1095	38	1	1626	1	IGSF3	1	117142614	Nonsense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	77045379	117142614	132108007	3	77074										
ATP8B2	0	genome.wustl.edu	37	chr1	154319121	154319121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gctcgacacaggctactggaCggccatcaaccacttcttca	8	15	3	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	154319121	154319121	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.3149	p.T1050M	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	126	0	0	49	20	28.99	-	-	-	T	154319121	C	T	154319121	3	4	974	1	0	0	0	0	1	0	0	0	1199	536	19	1	3381	1	ATP8B2	1	154319121	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	37176507	154319121	94931500	4	77075										
NTRK1	0	genome.wustl.edu	37	chr1	156838347	156838347	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	atgcctcggtggatgtggggGacgacgtgctgctgcggtgc	19	9	0	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	156838347	156838347	G	C	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	1	known	missense	c.625	p.D209H	0.852	pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	127	0	0	46	7	13.21	-	-	-	C	156838347	G	C	156838347	3	2	974	1	0	0	0	0	1	0	0	0	10779	1174	41	2	777	2	NTRK1	1	156838347	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	2519226	156838347	92412274	5	77076										
GLUL	0	genome.wustl.edu	37	chr1	182354468	182354468	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tctgccacaggagattaaagAtggccccagcagaaggtact	11	10	1	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	182354468	182354468	A	G	SNP	GLUL	ENST00000491322	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLUL	HGNC	ENSG00000135821	31	0	0	13	9	40.91	-	-	-	G	182354468	A	G	182354468	1	3	974	0	1	0	0	0	0	0	0	0	6530	348	12	5		5	GLUL	1	182354468	RNA	SNP	A	TCGA-OL-A66J-01A-11D-A29N-09	25516121	182354468	66896153	6	77077										
PLEKHA6	0	genome.wustl.edu	37	chr1	204228630	204228630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ccctggcactcttgggccctCggggtaagggctgcccggct	15	15	1	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	1	204228630	204228630	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	69_37n	-1	known	missense	c.763	p.E255K	0.995	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	54	0	0	25	11	30.56	-	-	-	T	204228630	C	T	204228630	3	4	974	1	0	0	0	0	1	0	0	0	12134	893	31	1	2443	1	PLEKHA6	1	204228630	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	21874162	204228630	45021991	7	77078										
ATG9A	0	genome.wustl.edu	37	chr2	220090180	220090180	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	aaggcgtctggcagagtgacCttgacgggttcagtagggtg	17	7	2	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	2	220090180	220090180	C	T	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	silent	c.327	p.K109	1.000	NULL	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	94	0	0	42	13	23.64	-	-	-	T	220090180	C	T	220090180	2	4	974	1	0	0	0	0	0	0	0	1	1106	680	24	4		4	ATG9A	2	220090180	Silent	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		220090180	23109193	8	77079										
DGKD	0	genome.wustl.edu	37	chr2	234347021	234347021	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcatgaacggaggcccacacCtcgggtaggaagcttgtaaa	12	10	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	2	234347021	234347021	C	A	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	1	known	missense	c.1081	p.L361I	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	92	0	0	29	17	36.96	-	-	-	A	234347021	C	A	234347021	3	1	974	1	0	0	0	0	1	0	0	0	4503	681	24	4	1139	4	DGKD	2	234347021	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	14256841	234347021	8852352	9	77080										
SEC22C	0	genome.wustl.edu	37	chr3	42602687	42602687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ctccagagtgagaaccgctgGaggctgcaacttgagctcct	12	12	0	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	42602687	42602687	G	T	SNP	SEC22C	ENST00000264454	human	ensembl	69_37n	-1	known	missense	c.448	p.P150T	0.991	NULL	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22C	HGNC	ENSG00000093183	44	0	0	19	15	44.12	-	-	-	T	42602687	G	T	42602687	3	4	974	1	0	0	0	0	1	0	0	0	14078	1174	41	2	525	2	SEC22C	3	42602687	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09		42602687	155419743	10	77081										
ZNF35	0	genome.wustl.edu	37	chr3	44701310	44701310	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tgtgggaaggccttcagacaGaggtcgagcctcaccgtgca	14	11	2	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	44701310	44701310	G	A	SNP	ZNF35	ENST00000396056	human	ensembl	69_37n	1	known	silent	c.1455	p.Q485	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981	36	0	0	13	11	45.83	-	-	-	A	44701310	G	A	44701310	2	1	974	1	0	0	0	0	0	0	0	1	17958	933	33	2		2	ZNF35	3	44701310	Silent	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	2098623	44701310	153321120	11	77082										
PIK3R4	0	genome.wustl.edu	37	chr3	130452625	130452625	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tttcaacacttaatcttggaGccaaatgaagaatcagttcc	6	9	3	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	130452625	130452625	G	C	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.1217	p.A406G	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	60	0	0	21	10	32.26	-	-	-	C	130452625	G	C	130452625	3	2	974	1	0	0	0	0	1	0	0	0	11995	971	34	4	2927	4	PIK3R4	3	130452625	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	85751315	130452625	67569805	12	77083										
SLC9A9	0	genome.wustl.edu	37	chr3	143412150	143412150	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	caaaaccatacataattaacCtgttgaagagaaaaacatga	5	7	0	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	143412150	143412150	C	T	SNP	SLC9A9	ENST00000316549	human	ensembl	69_37n	-1	known	splice_site	c.534-1	e5-1	1.000	-	-	-	no_errors	SLC9A9	HGNC	ENSG00000181804	63	0	0	21	10	32.26	-	-	-	T	143412150	C	T	143412150	5	4	974	1	0	0	0	0	0	0	1	0	14810	695	24	4	1452	4	SLC9A9	3	143412150	Splice_Site	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	12959525	143412150	54610280	13	77084										
KLHL6	0	genome.wustl.edu	37	chr3	183217542	183217542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ccacaaaccgttcatccttcGtgcagccgccaatgatcatg	7	15	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	183217542	183217542	G	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	missense	c.983	p.T328M	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	46	0	0	27	11	28.95	-	-	-	A	183217542	G	A	183217542	3	1	974	1	0	0	0	0	1	0	0	0	8446	1145	40	1	898	1	KLHL6	3	183217542	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	39805392	183217542	14804888	14	77085										
ETV5	0	genome.wustl.edu	37	chr3	185802069	185802069	+	Frame_Shift_Del	DEL	G	G	-													0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gaggaagtttgaaaagaaatGctaaaaaaaaaaaaaaaaaa							TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	3	185802069	185802069	G	-	DEL	ETV5	ENST00000422039	human	ensembl	69_37n	-1	novel	frame_shift_del	c.233	p.P78fs	0.005	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N	-	no_stop_codon	ETV5	HGNC	ENSG00000244405	11	0	0	4	2	33.33	-	-	-	-	185802069	G	-	185802069	7	5	974	1	0	1	0	1	0	0	0	0	5319	1334	46	0		0	ETV5	3	185802069	Frame_Shift_Del	DEL	G	TCGA-OL-A66J-01A-11D-A29N-09	2584527	185802069	12220361	15	77086										
OTUD4	0	genome.wustl.edu	37	chr4	146032219	146032219	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	catacagaaagctgatatgtAggttactttacaatttttgt	7	5	0	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	4	146032219	146032219	A	G	SNP	OTUD4	ENST00000455611	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OTUD4	HGNC	ENSG00000164164	102	0	0	66	25	27.47	-	-	-	G	146032219	A	G	146032219	1	3	974	0	1	0	0	0	0	0	0	0	11387	435	15	5		5	OTUD4	4	146032219	RNA	SNP	A	TCGA-OL-A66J-01A-11D-A29N-09		146032219	45122057	16	77087										
KIAA0922	0	genome.wustl.edu	37	chr4	154471274	154471274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gcttacattttcagccatcaGttttagattttggaatacag	7	7	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	4	154471274	154471274	G	T	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	1	known	missense	c.289	p.V97F	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	67	0	0	36	4	10	-	-	-	T	154471274	G	T	154471274	3	4	974	1	0	0	0	0	1	0	0	0	8253	1029	36	4	303	4	KIAA0922	4	154471274	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	8439055	154471274	36683002	17	77088										
SLC38A9	0	genome.wustl.edu	37	chr5	54929602	54929602	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ctaggataaatgtcaccgaaGatatggcccaaaagctggac	10	9	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	5	54929602	54929602	G	A	SNP	SLC38A9	ENST00000505708	human	ensembl	69_37n	-1	known	missense	c.1127	p.S376F	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058	58	0	0	29	11	27.5	-	-	-	A	54929602	G	A	54929602	3	1	974	1	0	0	0	0	1	0	0	0	14700	932	33	2	287	2	SLC38A9	5	54929602	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09		54929602	125985658	18	77089										
HIST1H2AC	0	genome.wustl.edu	37	chr6	26124464	26124464	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	atttttgtctgattgcaatgTctggacgtggtaagcaagga	12	5	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	6	26124464	26124464	T	C	SNP	HIST1H2AC	ENST00000314088	human	ensembl	69_37n	1	known	missense	c.4	p.S2P	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AC	HGNC	ENSG00000180573	115	0	0	61	22	26.51	-	-	-	C	26124464	T	C	26124464	3	2	974	1	0	0	0	0	1	0	0	0	7181	1667	58	5	6	5	HIST1H2AC	6	26124464	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09		26124464	144990603	19	77090										
ZFP57	0	genome.wustl.edu	37	chr6	29641083	29641083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tttgagctcagactggtcccGgaagctcttcccacacacag	9	14	2	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	6	29641083	29641083	G	A	SNP	ZFP57	ENST00000488757	human	ensembl	69_37n	-1	known	missense	c.805	p.R269W	0.049	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	105	0	0	51	18	25.71	-	-	-	A	29641083	G	A	29641083	3	1	974	1	0	0	0	0	1	0	0	0	17747	1115	39	1	809	1	ZFP57	6	29641083	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	3516619	29641083	141473984	20	77091										
BRPF3	0	genome.wustl.edu	37	chr6	36182131	36182131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gagctgtagtgagagcgaagGggagaggtccccccagcagg	18	9	0	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	6	36182131	36182131	G	A	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	1	known	missense	c.2957	p.G986E	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	78	0	0	21	7	25	-	-	-	A	36182131	G	A	36182131	3	1	974	1	0	0	0	0	1	0	0	0	1529	1232	43	4	2983	4	BRPF3	6	36182131	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	6541048	36182131	134932936	21	77092										
EPHA7	0	genome.wustl.edu	37	chr6	94120444	94120444	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	aataatggaccagcacttctTgtagtacactttgacagaaa	7	8	1	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	6	94120444	94120444	T	C	SNP	EPHA7	ENST00000369303	human	ensembl	69_37n	-1	known	missense	c.607	p.K203E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	53	0	0	18	7	28	-	-	-	C	94120444	T	C	94120444	3	2	974	1	0	0	0	0	1	0	0	0	5209	1821	63	5	2449	5	EPHA7	6	94120444	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09	57938313	94120444	76994623	22	77093										
MTHFD1L	0	genome.wustl.edu	37	chr6	151277147	151277147	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcagtattggatacaaatgaCcgatttctacgaaaaataac	6	7	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	6	151277147	151277147	C	T	SNP	MTHFD1L	ENST00000367321	human	ensembl	69_37n	1	known	silent	c.1743	p.D581	1.000	pfam_Formate_THF_ligase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	54	0	0	26	11	29.73	-	-	-	T	151277147	C	T	151277147	2	4	974	1	0	0	0	0	0	0	0	1	10000	506	18	4		4	MTHFD1L	6	151277147	Silent	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	57156703	151277147	19837920	23	77094										
MYOM2	0	genome.wustl.edu	37	chr8	1998981	1998981	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cctgctggacgaatatgcgtCaaaaaagtaagctgacattc	9	9	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	8	1998981	1998981	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	69_37n	1	known	nonsense	c.101	p.S34*	0.117	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM2	HGNC	ENSG00000036448	83	0	0	18	18	50	-	-	-	G	1998981	C	G	1998981	4	3	974	1	0	0	0	0	0	1	0	0	10164	838	29	2	103	2	MYOM2	8	1998981	Nonsense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		1998981	144365041	24	77095										
RLN2	0	genome.wustl.edu	37	chr9	5300176	5300176	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	aatgcactgtagagttgtctCttttttcgagaatgagtatc	9	6	1	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	9	5300176	5300176	C	A	SNP	RLN2	ENST00000381627	human	ensembl	69_37n	-1	known	missense	c.480	p.K160N	0.027	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN2	HGNC	ENSG00000107014	81	0	0	37	15	28.85	-	-	-	A	5300176	C	A	5300176	3	1	974	1	0	0	0	0	1	0	0	0	13478	912	32	2	81	2	RLN2	9	5300176	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		5300176	135913255	25	77096										
TUBB8	0	genome.wustl.edu	37	chr10	94654	94654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cacgagcacagcgcggggcaCgtacctgccacctgcgtggg	15	15	0	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	10	94654	94654	C	T	SNP	TUBB8	ENST00000328974	human	ensembl	69_37n	-1	known	missense	c.178	p.V60M	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	93	0	0	46	15	24.59	-	-	-	T	94654	C	T	94654	3	4	974	1	0	0	0	0	1	0	0	0	16858	536	19	1	1164	1	TUBB8	10	94654	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		94654	135440093	26	77097										
MMP10	0	genome.wustl.edu	37	chr11	102647065	102647065	+	Frame_Shift_Del	DEL	A	A	-													0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tgctgatggcatcgaaggacAaagcaggatcacacttggct							TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	11	102647065	102647065	A	-	DEL	MMP10	ENST00000279441	human	ensembl	69_37n	-1	known	frame_shift_del	c.878	p.L293fs	0.985	pirsf_Pept_M10A_matrix_strom,superfamily_Hemopexin/matrixin	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP10	HGNC	ENSG00000166670	58	0	0	17	2	10.53	-	-	-	-	102647065	A	-	102647065	7	5	974	1	0	1	0	1	0	0	0	0	9720	131	5	0	572	0	MMP10	11	102647065	Frame_Shift_Del	DEL	A	TCGA-OL-A66J-01A-11D-A29N-09		102647065	32359451	27	77098										
CUL5	0	genome.wustl.edu	37	chr11	107959361	107959361	+	Frame_Shift_Del	DEL	A	A	-													0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	caaaaaactaacctctgaagAgattgaagcaaagcttaaag							TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	11	107959361	107959361	A	-	DEL	CUL5	ENST00000393094	human	ensembl	69_37n	1	known	frame_shift_del	c.1286	p.E429fs	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266	42	0	0	10	6	37.5	-	-	-	-	107959361	A	-	107959361	7	5	974	1	0	1	0	1	0	0	0	0	4090	304	11	0	1332	0	CUL5	11	107959361	Frame_Shift_Del	DEL	A	TCGA-OL-A66J-01A-11D-A29N-09	5312296	107959361	27047155	28	77099										
HOXC9	0	genome.wustl.edu	37	chr12	54396402	54396402	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcaaaatctggtttcagaatCgaaggatgaagatgaaaaag	10	4	3	4			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	12	54396402	54396402	C	G	SNP	HOXC9	ENST00000303450	human	ensembl	69_37n	1	known	missense	c.727	p.R243G	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,prints_Homeobox_metazoa,pfscan_Homeodomain	pfam_Hox9_activation_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Hox9,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXC9	HGNC	ENSG00000180806	33	0	0	14	7	33.33	-	-	-	G	54396402	C	G	54396402	3	3	974	1	0	0	0	0	1	0	0	0	7368	876	31	3	733	3	HOXC9	12	54396402	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		54396402	79455493	29	77100										
ZNF385A	0	genome.wustl.edu	37	chr12	54769725	54769725	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tgtgggagagcacagccttcTgcacagggtccatctgtgga	14	10	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	12	54769725	54769725	T	C	SNP	ZNF385A	ENST00000338010	human	ensembl	69_37n	-1	known	missense	c.161	p.Q54R	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642	45	0	0	17	11	39.29	-	-	-	C	54769725	T	C	54769725	3	2	974	1	0	0	0	0	1	0	0	0	17972	1580	55	5	1023	5	ZNF385A	12	54769725	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09	373323	54769725	79082170	30	77101										
SBNO1	0	genome.wustl.edu	37	chr12	123801768	123801768	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tccagtttgtaggaacttacCgaactgttgaattgctctat	8	8	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	12	123801768	123801768	C	T	SNP	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	missense	c.2935	p.G979R	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	61	0	0	31	15	32.61	-	-	-	T	123801768	C	T	123801768	3	4	974	1	0	0	0	0	1	0	0	0	13949	666	23	1	1294	1	SBNO1	12	123801768	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	69032043	123801768	10050127	31	77102										
TEP1	0	genome.wustl.edu	37	chr14	20852245	20852245	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tgccccgtcaccaggctcagCcttccgtggggcagcatcag	12	16	3	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	14	20852245	20852245	C	A	SNP	TEP1	ENST00000262715	human	ensembl	69_37n	-1	known	missense	c.3486	p.R1162S	0.999	pfscan_NACHT_NTPase	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	105	0	0	36	12	25	-	-	-	A	20852245	C	A	20852245	3	1	974	1	0	0	0	0	1	0	0	0	15854	738	26	4	4525	4	TEP1	14	20852245	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		20852245	86497295	32	77103										
SUPT16H	0	genome.wustl.edu	37	chr14	21840141	21840141	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tttttcttgctggccataaaGatgattttgtcatcacaaaa	6	7	3	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	14	21840141	21840141	G	A	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	silent	c.222	p.I74	1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	117	0	0	64	19	22.89	-	-	-	A	21840141	G	A	21840141	2	1	974	1	0	0	0	0	0	0	0	1	15487	932	33	2		2	SUPT16H	14	21840141	Silent	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	987896	21840141	85509399	33	77104										
CHD8	0	genome.wustl.edu	37	chr14	21868628	21868628	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cagctgggctaatcaagtccCagatgaagcctttaatattt	8	9	1	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	14	21868628	21868628	C	A	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.4514	p.W1505L	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	61	0	0	18	6	25	-	-	-	A	21868628	C	A	21868628	3	1	974	1	0	0	0	0	1	0	0	0	3360	595	21	4	3295	4	CHD8	14	21868628	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	28487	21868628	85480912	34	77105										
FOXA1	0	genome.wustl.edu	37	chr14	38061248	38061248	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	aacatgttgccggagtccggGtgcagcgtccagtaggagcc	15	11	0	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	14	38061248	38061248	G	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.741	p.H247Q	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	84	0	0	38	14	26.42	-	-	-	C	38061248	G	C	38061248	3	2	974	1	0	0	0	0	1	0	0	0	6035	1252	44	4	681	4	FOXA1	14	38061248	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	16192620	38061248	69288292	35	77106										
TTC7B	0	genome.wustl.edu	37	chr14	91007734	91007734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	agagcacgcgggggatgatgGtgaagggcacggcggggctg	22	7	0	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	14	91007734	91007734	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.2561	p.T854I	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	56	0	0	35	7	16.67	-	-	-	A	91007734	G	A	91007734	3	1	974	1	0	0	0	0	1	0	0	0	16810	1261	44	4	25	4	TTC7B	14	91007734	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	52946486	91007734	16341806	36	77107										
ONECUT1	0	genome.wustl.edu	37	chr15	53081276	53081276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcaccgaagggttgggctccCgggctgtgcccaggagttgc	16	12	1	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	15	53081276	53081276	C	T	SNP	ONECUT1	ENST00000305901	human	ensembl	69_37n	-1	known	missense	c.806	p.R269Q	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856	101	0	0	41	8	16.33	-	-	-	T	53081276	C	T	53081276	3	4	974	1	0	0	0	0	1	0	0	0	10941	652	23	1	599	1	ONECUT1	15	53081276	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		53081276	49450116	37	77108										
FBXL22	0	genome.wustl.edu	37	chr15	63889651	63889651	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cgggagtgcctgctgcacctCttctccttcctagacaagga	10	14	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	15	63889651	63889651	C	T	SNP	FBXL22	ENST00000539570	human	ensembl	69_37n	1	known	silent	c.60	p.L20	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	AC118274.1	Clone_based_ensembl_gene	ENSG00000259662	57	0	0	22	8	26.67	-	-	-	T	63889651	C	T	63889651	2	4	974	1	0	0	0	0	0	0	0	1	5765	900	32	2		2	FBXL22	15	63889651	Silent	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	10808375	63889651	38641741	38	77109										
MCTP2	0	genome.wustl.edu	37	chr15	94983526	94983526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cagcagcatccaggacagccAggtaagcaaggattcggagt	13	10	0	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	15	94983526	94983526	A	G	SNP	MCTP2	ENST00000357742	human	ensembl	69_37n	1	known	missense	c.2207	p.Q736R	1.000	pfam_PRibTrfase_C	pfam_C2_Ca-dep,pfam_PRibTrfase_C,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	MCTP2	HGNC	ENSG00000140563	77	0	0	38	17	30.91	-	-	-	G	94983526	A	G	94983526	3	3	974	1	0	0	0	0	1	0	0	0	9472	202	7	5	2349	5	MCTP2	15	94983526	Missense_Mutation	SNP	A	TCGA-OL-A66J-01A-11D-A29N-09	31093875	94983526	7547866	39	77110										
FBRS	0	genome.wustl.edu	37	chr16	30673785	30673785	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcctttactgtctcaaccagCaaaggttggtcccaaggtct	8	12	2	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	16	30673785	30673785	C	G	SNP	FBRS	ENST00000356166	human	ensembl	69_37n	1	known	missense	c.750	p.S250R	1.000	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860	123	0	0	44	15	25.42	-	-	-	G	30673785	C	G	30673785	3	3	974	1	0	0	0	0	1	0	0	0	5753	725	25	4		4	FBRS	16	30673785	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		30673785	59680968	40	77111										
SLC12A4	0	genome.wustl.edu	37	chr16	67981664	67981664	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	acaaacataagggccaggcaGagactcatgcccaggaagga	12	10	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	16	67981664	67981664	G	T	SNP	SLC12A4	ENST00000422611	human	ensembl	69_37n	-1	known	silent	c.1881	p.L627	0.997	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067	35	0	0	15	3	16.67	-	-	-	T	67981664	G	T	67981664	2	4	974	1	0	0	0	0	0	0	0	1	14474	929	33	2		2	SLC12A4	16	67981664	Silent	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	37307879	67981664	22373089	41	77112										
NXN	0	genome.wustl.edu	37	chr17	704332	704332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gagcaaaggggcagcctcagGcaggttggtgtaatctcgca	15	9	2	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	17	704332	704332	G	A	SNP	NXN	ENST00000336868	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389S	1.000	superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693	41	0	0	30	9	23.08	-	-	-	A	704332	G	A	704332	3	1	974	1	0	0	0	0	1	0	0	0	10860	1203	42	4	146	4	NXN	17	704332	Missense_Mutation	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09		704332	80490878	42	77113										
C17orf61	0	genome.wustl.edu	37	chr17	7307396	7307396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ggcggaaagctgcagctggcCcggccatagctgtagaacag	15	11	0	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	17	7307396	7307396	C	T	SNP	C17orf61	ENST00000302422	human	ensembl	69_37n	-1	known	missense	c.8	p.G3E	0.005	NULL	pfam_DUF423	-	no_errors	C17orf61	HGNC	ENSG00000205544	49	0	0	31	7	18.42	-	-	-	T	7307396	C	T	7307396	3	4	974	1	0	0	0	0	1	0	0	0	1884	623	22	4	349	4	C17orf61	17	7307396	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	6603064	7307396	73887814	43	77114										
RCVRN	0	genome.wustl.edu	37	chr17	9808318	9808318	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tgggcgtaggccttggggtcGgtgtcggggaagaacttggc	20	7	0	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	17	9808318	9808318	G	T	SNP	RCVRN	ENST00000226193	human	ensembl	69_37n	-1	known	silent	c.180	p.T60	0.989	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	RCVRN	HGNC	ENSG00000109047	142	0	0	49	20	28.99	-	-	-	T	9808318	G	T	9808318	2	4	974	1	0	0	0	0	0	0	0	1	13269	1103	39	3		3	RCVRN	17	9808318	Silent	SNP	G	TCGA-OL-A66J-01A-11D-A29N-09	2500922	9808318	71386892	44	77115										
SMCHD1	0	genome.wustl.edu	37	chr18	2778215	2778215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tattttggataatctggatgCggccaatcattatagaaaag	9	5	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	18	2778215	2778215	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	1	known	missense	c.5525	p.A1842V	1.000	pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	64	0	0	18	11	37.93	-	-	-	T	2778215	C	T	2778215	3	4	974	1	0	0	0	0	1	0	0	0	14877	768	27	1	5699	1	SMCHD1	18	2778215	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		2778215	75299033	45	77116										
ANKRD12	0	genome.wustl.edu	37	chr18	9256119	9256122	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	aatcagaaaaaggcaaaaatAaagaaaaagacagggagcta							TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	18	9256119	9256122	AAAG	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	1	known	frame_shift_del	c.2854_2857	p.E953fs	0.994:0.999:1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	28	0	0	10	6	37.5	-	-	-	-	9256122	AAAG	-	9256119	7	5	974	1	0	1	0	1	0	0	0	0	640	363	13	0	2884	0	ANKRD12	18	9256119	Frame_Shift_Del	DEL	AAAG	TCGA-OL-A66J-01A-11D-A29N-09	6477904	9256119	68821129	46	77117										
NFATC1	0	genome.wustl.edu	37	chr18	77170736	77170736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ctccaaacggtccccctccaCggccacgctgagtctgccca	8	20	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	18	77170736	77170736	C	T	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	missense	c.461	p.T154M	0.990	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	109	1	0.9	38	10	20.83	-	-	-	T	77170736	C	T	77170736	3	4	974	1	0	0	0	0	1	0	0	0	10433	536	19	1	559	1	NFATC1	18	77170736	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	67914617	77170736	906512	47	77118										
STAP2	0	genome.wustl.edu	37	chr19	4325395	4325395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gctctgttccccacccaccaTcttggttctcatagtcaaca	5	16	4	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	19	4325395	4325395	T	C	SNP	STAP2	ENST00000314714	human	ensembl	69_37n	-1	known	missense	c.977	p.D326G	0.014	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078	57	0	0	41	15	26.79	-	-	-	C	4325395	T	C	4325395	3	2	974	1	0	0	0	0	1	0	0	0	15344	1435	50	5	388	5	STAP2	19	4325395	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09		4325395	54803588	48	77119										
ERCC2	0	genome.wustl.edu	37	chr19	45856499	45856499	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	acgctggcctcgcacacccaCctcctggtacttctccaggg	9	18	1	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	19	45856499	45856499	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	69_37n	-1	known	splice_site	c.1758+1	e18+1	1.000	-	-	-	no_errors	ERCC2	HGNC	ENSG00000104884	37	0	0	17	7	29.17	-	-	-	T	45856499	C	T	45856499	5	4	974	1	0	0	0	0	0	0	1	0	5250	521	18	4	547	4	ERCC2	19	45856499	Splice_Site	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	41531104	45856499	13272484	49	77120										
TASP1	0	genome.wustl.edu	37	chr20	13415772	13415772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gacaatcactccgccaagcaCgccatcttcactggcaagga	8	15	3	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	20	13415772	13415772	C	T	SNP	TASP1	ENST00000337743	human	ensembl	69_37n	-1	known	missense	c.1015	p.V339M	0.986	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	33	0	0	12	7	36.84	-	-	-	T	13415772	C	T	13415772	3	4	974	1	0	0	0	0	1	0	0	0	15681	536	19	1	259	1	TASP1	20	13415772	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		13415772	49609748	50	77121										
C22orf23	0	genome.wustl.edu	37	chr22	38340200	38340200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gattaagtggtggcaagaccCttcctaagttcctcactcct	8	12	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	22	38340200	38340200	C	T	SNP	C22orf23	ENST00000249079	human	ensembl	69_37n	-1	known	silent	c.636	p.K212	0.973	pfam_UPF0193	pfam_UPF0193	-	no_errors	C22orf23	HGNC	ENSG00000128346	133	0	0	42	17	28.81	-	-	-	T	38340200	C	T	38340200	2	4	974	1	0	0	0	0	0	0	0	1	2157	680	24	4		4	C22orf23	22	38340200	Silent	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		38340200	12964366	51	77122										
POLR2F	0	genome.wustl.edu	37	chr22	38382254	38382254	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ccgtcgtgtcccggctgcccTgcagtcgcctccaacacccg	10	20	0	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	22	38382254	38382254	T	C	SNP	POLR2F	ENST00000333418	human	ensembl	69_37n	1	putative	missense	c.55	p.C19R	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	POLR2F	HGNC	ENSG00000100142	60	0	0	22	4	15.38	-	-	-	C	38382254	T	C	38382254	3	2	974	1	0	0	0	0	1	0	0	0	12293	1595	55	5		5	POLR2F	22	38382254	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09	42054	38382254	12922312	52	77123										
XPNPEP3	0	genome.wustl.edu	37	chr22	41258059	41258059	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	gaaccgtggtttcctcagctCaggctctgctggtggtggtg	15	10	3	0			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	22	41258059	41258059	C	T	SNP	XPNPEP3	ENST00000482652	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	64	0	0	27	7	20.59	-	-	-	T	41258059	C	T	41258059	1	4	974	0	1	0	0	0	0	0	0	0	17541	841	29	2		2	XPNPEP3	22	41258059	RNA	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	2875805	41258059	10046507	53	77124										
ZC3H7B	0	genome.wustl.edu	37	chr22	41716713	41716713	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	tcgagaaagggctgcagttcAttcagtaagcctgcatgcgg	13	9	2	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	22	41716713	41716713	A	T	SNP	ZC3H7B	ENST00000351589	human	ensembl	69_37n	1	known	missense	c.49	p.I17F	1.000	NULL	pfam_Znf_CCCH,pfam_TPR-1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	59	0	0	24	14	36.84	-	-	-	T	41716713	A	T	41716713	3	4	974	1	0	0	0	0	1	0	0	0	17669	217	8	5	51	5	ZC3H7B	22	41716713	Missense_Mutation	SNP	A	TCGA-OL-A66J-01A-11D-A29N-09	458654	41716713	9587853	54	77125										
ABCB7	0	genome.wustl.edu	37	chrX	74296484	74296484	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	atgaagggaaccacaatattCatggcctaaaaacataaaaa	6	7	1	1			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	X	74296484	74296484	C	T	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	missense	c.462	p.M154I	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	95	0	0	37	25	40.32	-	-	-	T	74296484	C	T	74296484	3	4	974	1	0	0	0	0	1	0	0	0	46	826	29	2	1847	2	ABCB7	23	74296484	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09		74296484	80974076	55	77126										
GPR174	0	genome.wustl.edu	37	chrX	78426712	78426712	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	ttgctgacttactacaagttCtttccttgccactgaggatc	7	11	1	2			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	X	78426712	78426712	C	A	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	1	known	missense	c.208	p.L70I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	91	0	0	31	12	27.91	-	-	-	A	78426712	C	A	78426712	3	1	974	1	0	0	0	0	1	0	0	0	6722	913	32	2	210	2	GPR174	23	78426712	Missense_Mutation	SNP	C	TCGA-OL-A66J-01A-11D-A29N-09	4130228	78426712	76843848	56	77127										
MTM1	0	genome.wustl.edu	37	chrX	149828874	149828874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.12280701754386	7	0.344894097038568	1.67391304347826	1.35507246376812	1.74223602484472	0.0572755417956657	0.402989063857274	0	cttttgaattcaatgaacaaTttttgattataattttggat	5	3	1	3			TCGA-OL-A66J-01A-11D-A29N-09	TCGA-OL-A66J-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2b9b36e-1584-453c-a2cb-6455ef27e088	65db66df-0e02-40dd-9c2a-cc353d980700	X	149828874	149828874	T	C	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	1	known	missense	c.1384	p.F462L	0.654	smart_Tyr_Pase_cat	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	59	0	0	18	6	25	-	-	-	C	149828874	T	C	149828874	3	2	974	1	0	0	0	0	1	0	0	0	10009	1493	52	5	1430	5	MTM1	23	149828874	Missense_Mutation	SNP	T	TCGA-OL-A66J-01A-11D-A29N-09	71402162	149828874	5441686	57	77128										
CYP4X1	0	genome.wustl.edu	37	chr1	47497137	47497137	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cccagtacctgcagaaattcTcacctccacttcttggtatg	6	14	2	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	1	47497137	47497137	T	A	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	1	known	missense	c.349	p.S117T	0.006	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	54	0	0	48	7	12.73	-	-	-	A	47497137	T	A	47497137	3	1	975	1	0	0	0	0	1	0	0	0	4224	1551	54	5	359	5	CYP4X1	1	47497137	Missense_Mutation	SNP	T	TCGA-OL-A66K-01A-11D-A29N-09		47497137	201753484	1	77129										
DPYD	0	genome.wustl.edu	37	chr1	98144721	98144721	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtcatttcattcactgaaagGcttttaccgcaaattatcta	5	9	4	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	1	98144721	98144721	G	T	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	missense	c.780	p.S260R	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	102	0	0	36	4	10	-	-	-	T	98144721	G	T	98144721	3	4	975	1	0	0	0	0	1	0	0	0	4780	1194	42	4	2361	4	DPYD	1	98144721	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09	50647584	98144721	151105900	2	77130										
PLCXD2	0	genome.wustl.edu	37	chr3	111432830	111432830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggcaaacaccacaagtgtgCgcaaactaatcctcttcttg	8	12	2	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	3	111432830	111432830	C	T	SNP	PLCXD2	ENST00000477665	human	ensembl	69_37n	1	known	missense	c.721	p.R241C	0.150	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891	42	0	0	27	7	20.59	-	-	-	T	111432830	C	T	111432830	3	4	975	1	0	0	0	0	1	0	0	0	12116	768	27	1	731	1	PLCXD2	3	111432830	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09		111432830	86589600	3	77131										
GFM1	0	genome.wustl.edu	37	chr3	158364565	158364565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cacaatagaagtggaaagggCcctgagagtgttggatggtg	16	5	0	2			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	3	158364565	158364565	C	T	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	1	known	missense	c.401	p.A134V	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	71	0	0	52	11	17.46	-	-	-	T	158364565	C	T	158364565	3	4	975	1	0	0	0	0	1	0	0	0	6393	739	26	4	415	4	GFM1	3	158364565	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	46931735	158364565	39657865	4	77132										
PKD2L2	0	genome.wustl.edu	37	chr5	137230184	137230184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agttcgtcaactaaaagtccGcaacaacacatgcaaagtct	6	11	2	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	5	137230184	137230184	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	1	known	missense	c.410	p.R137H	0.986	pfam_PKD1_2_channel,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	69	0	0	53	9	14.52	-	-	-	A	137230184	G	A	137230184	3	1	975	1	0	0	0	0	1	0	0	0	12042	1087	38	1	424	1	PKD2L2	5	137230184	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		137230184	43685076	5	77133										
DST	0	genome.wustl.edu	37	chr6	56484354	56484354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttctcagctacagcatgtGcccttgtgattctgtctact	7	12	4	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	6	56484354	56484354	G	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.4478	p.A1493V	0.062	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	99	0	0	37	18	32.73	-	-	-	A	56484354	G	A	56484354	3	1	975	1	0	0	0	0	1	0	0	0	4818	1319	46	4	15925	4	DST	6	56484354	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		56484354	114630713	6	77134										
MLXIPL	0	genome.wustl.edu	37	chr7	73021500	73021501	+	Frame_Shift_Del	DEL	TG	TG	-													0	0	1	0	0	0	1	1	0	aggaggccgctaggagacgcTgtggccacacggtggcgctg							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	7	73021500	73021501	TG	-	DEL	MLXIPL	ENST00000456640	human	ensembl	69_37n	-1	putative	frame_shift_del	c.425_424	p.Q142fs	0.001:0.040	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	MLXIPL	HGNC	ENSG00000009950	22	0	0	28	6	17.14	-	-	-	-	73021501	TG	-	73021500	7	5	975	1	0	1	0	1	0	0	0	0	9708	1595	55	0		0	MLXIPL	7	73021500	Frame_Shift_Del	DEL	TG	TCGA-OL-A66K-01A-11D-A29N-09		73021500	86117163	7	77135										
NEFM	0	genome.wustl.edu	37	chr8	24771948	24771948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaagacatcgaggaggcgtcGctggtcaaggtggagctgga	17	7	1	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	8	24771948	24771948	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	1	known	silent	c.642	p.S214	0.996	pfam_F,prints_Keratin_I	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	20	0	0	25	19	43.18	-	-	-	A	24771948	G	A	24771948	2	1	975	1	0	0	0	0	0	0	0	1	10388	1074	38	1		1	NEFM	8	24771948	Silent	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		24771948	121592074	8	77136										
ROR2	0	genome.wustl.edu	37	chr9	94495597	94495597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcgtcgcggcacagctcacgCggcttgggtgtccgggagcg	17	13	1	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	94495597	94495597	C	T	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	silent	c.744	p.P248	0.668	pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	59	0	0	57	35	38.04	-	-	-	T	94495597	C	T	94495597	2	4	975	1	0	0	0	0	0	0	0	1	13613	755	27	1		1	ROR2	9	94495597	Silent	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09		94495597	46717834	9	77137										
STRBP	0	genome.wustl.edu	37	chr9	125909224	125909224	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tctacagacattgtgaagacTggggcatgaacggggccaga	14	8	1	5			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	125909224	125909224	T	A	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	silent	c.1248	p.P416	0.996	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	110	0	0	76	9	10.59	-	-	-	A	125909224	T	A	125909224	2	1	975	1	0	0	0	0	0	0	0	1	15418	1567	55	5		5	STRBP	9	125909224	Silent	SNP	T	TCGA-OL-A66K-01A-11D-A29N-09	31413627	125909224	15304207	10	77138										
DBH	0	genome.wustl.edu	37	chr9	136509403	136509403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagggtcctccagatatctcCgcctggaagttcactaccac	8	15	2	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	136509403	136509403	C	T	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	missense	c.985	p.R329C	1.000	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	40	0	0	24	9	27.27	-	-	-	T	136509403	C	T	136509403	3	4	975	1	0	0	0	0	1	0	0	0	4282	652	23	1	1003	1	DBH	9	136509403	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	10600179	136509403	4704028	11	77139										
GATA3	0	genome.wustl.edu	37	chr10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-													0	0	1	0	0	0	1	1	0	ctctcctctctccccactctCagtctgcagccaggagagca							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	64	0	0	59	10	14.49	-	-	-	-	8111434	CA	-	8111433	8	5	975	1	0	1	0	1	0	0	1	0	6305	841	29	0		0	GATA3	10	8111433	Splice_Site	DEL	CA	TCGA-OL-A66K-01A-11D-A29N-09		8111433	127423314	12	77140										
GRIA4	0	genome.wustl.edu	37	chr11	105769081	105769081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtggattttaatacacctatGgtaatcaaactaatggatcg	8	6	1	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	11	105769081	105769081	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	1	known	missense	c.813	p.M271I	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	130	0	0	49	10	16.95	-	-	-	A	105769081	G	A	105769081	3	1	975	1	0	0	0	0	1	0	0	0	6821	1348	47	4	835	4	GRIA4	11	105769081	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		105769081	29237435	13	77141										
CACNA1C	0	genome.wustl.edu	37	chr12	2797847	2797847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccggtggcgggggcagcagcGccgcccggagagtccggccc	19	16	0	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	12	2797847	2797847	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	1	known	missense	c.6232	p.A2078T	0.193	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	64	0	0	46	17	26.56	-	-	-	A	2797847	G	A	2797847	3	1	975	1	0	0	0	0	1	0	0	0	2565	1087	38	1	6910	1	CACNA1C	12	2797847	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		2797847	131054048	14	77142										
CCDC60	0	genome.wustl.edu	37	chr12	119968836	119968836	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aggatctgaggatttgggaaCtgtgctcccctgacatcgct	12	10	1	2			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	12	119968836	119968836	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	1	known	silent	c.1519	p.L507	0.972	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	46	0	0	47	13	21.67	-	-	-	T	119968836	C	T	119968836	2	4	975	1	0	0	0	0	0	0	0	1	2858	564	20	4		4	CCDC60	12	119968836	Silent	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	117170989	119968836	13883059	15	77143										
FREM2	0	genome.wustl.edu	37	chr13	39448667	39448667	+	Frame_Shift_Del	DEL	C	C	-													0	0	1	0	0	0	1	1	0	cggtgatgaggggcgcttggCcgtgcacttcaagacagagg							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	13	39448667	39448667	C	-	DEL	FREM2	ENST00000280481	human	ensembl	69_37n	1	known	frame_shift_del	c.8225	p.V2743fs	0.997	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	62	0	0	17	2	10.53	-	-	-	-	39448667	C	-	39448667	7	5	975	1	0	1	0	1	0	0	0	0	6094	739	26	0	8295	0	FREM2	13	39448667	Frame_Shift_Del	DEL	C	TCGA-OL-A66K-01A-11D-A29N-09		39448667	75721211	16	77144										
PAPLN	0	genome.wustl.edu	37	chr14	73720553	73720553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatctcgtctgacggggccGgcatccaggaggccgtggag	17	12	2	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	14	73720553	73720553	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	1	known	missense	c.1186	p.G396S	0.188	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	68	0	0	46	10	17.86	-	-	-	A	73720553	G	A	73720553	3	1	975	1	0	0	0	0	1	0	0	0	11501	1116	39	1	1143	1	PAPLN	14	73720553	Missense_Mutation	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		73720553	33628987	17	77145										
RIN3	0	genome.wustl.edu	37	chr14	93118714	93118714	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggacacagaggtgaaagcCagcgatcctcacagcatgcc	11	13	1	2			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	14	93118714	93118714	C	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	1	known	silent	c.1320	p.A440	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	37	0	0	19	4	17.39	-	-	-	A	93118714	C	A	93118714	2	1	975	1	0	0	0	0	0	0	0	1	13459	581	21	4		4	RIN3	14	93118714	Silent	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	19398161	93118714	14230826	18	77146										
USP8	0	genome.wustl.edu	37	chr15	50784950	50784950	+	Missense_Mutation	SNP	C	C	T													0	0	1	0	0	0	1	1	0	ggctttctgcttctcagattCggaacctcaatcctgttttt							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	15	50784950	50784950	C	T	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.2287	p.R763W	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	27	0	0	30	9	23.08	-	-	-	T	50784950	C	T	50784950	3	4	975	1	0	0	0	0	1	0	0	0	17186	875	31	1	2341	1	USP8	15	50784950	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09		50784950	51746442	19	77147	540	2								
USP8	0	genome.wustl.edu	37	chr15	50784955	50784955	+	Missense_Mutation	SNP	C	C	A													0	0	1	0	0	0	1	1	0	tctgcttctcagattcggaaCctcaatcctgtttttggagg							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	15	50784955	50784955	C	A	SNP	USP8	ENST00000307179	human	ensembl	69_37n	1	known	missense	c.2292	p.N764K	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	26	0	0	24	13	35.14	-	-	-	A	50784955	C	A	50784955	3	1	975	1	0	0	0	0	1	0	0	0	17186	506	18	4	2346	4	USP8	15	50784955	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	5	50784955	51746437	20	77148	540	2								
CDH1	0	genome.wustl.edu	37	chr16	68855914	68855915	+	Frame_Shift_Ins	INS	-	-	G													0	0	1	0	0	0	1	1	0	ttctcttaggttctccagttINSgctactggaacagggacact							TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	16	68855914	68855915	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	frame_shift_ins	c.1722_1723	p.A574fs	0.004:0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	53	0	0	23	18	43.9	-	-	-	G	68855915	-	G	68855914	7	5	975	1	0	1	1	0	0	0	0	0	3124	1799	63	0	1768	0	CDH1	16	68855914	Frame_Shift_Ins	INS	-	TCGA-OL-A66K-01A-11D-A29N-09		68855914	21498839	21	77149										
FLOT2	0	genome.wustl.edu	37	chr17	27207860	27207860	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcatcgaccttggtaagtggGgcagcgattttggcagcaat	13	8	1	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	27207860	27207860	G	C	SNP	FLOT2	ENST00000394908	human	ensembl	69_37n	-1	known	silent	c.1119	p.A373	0.153	NULL	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589	64	0	0	70	55	44	-	-	-	C	27207860	G	C	27207860	2	2	975	1	0	0	0	0	0	0	0	1	5983	1219	43	4		4	FLOT2	17	27207860	Silent	SNP	G	TCGA-OL-A66K-01A-11D-A29N-09		27207860	53987350	22	77150										
HN1	0	genome.wustl.edu	37	chr17	73132263	73132263	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gatggcactggggccggggcCaccgggctgggcacaggcgc	20	13	0	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	73132263	73132263	C	T	SNP	HN1	ENST00000356033	human	ensembl	69_37n	-1	known	nonsense	c.380	p.W127*	0.976	NULL	NULL	-	no_errors	HN1	HGNC	ENSG00000189159	47	0	0	46	7	13.21	-	-	-	T	73132263	C	T	73132263	4	4	975	1	0	0	0	0	0	1	0	0	7300	595	21	4	169	4	HN1	17	73132263	Nonsense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09	45924403	73132263	8062947	23	77151										
CARD14	0	genome.wustl.edu	37	chr17	78157880	78157880	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgccgagggcctgcaccagcTggaggctgaccacagccgca	14	15	0	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	78157880	78157880	T	A	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	1	known	missense	c.518	p.L173Q	0.991	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	37	0	0	41	34	45.33	-	-	-	A	78157880	T	A	78157880	3	1	975	1	0	0	0	0	1	0	0	0	2671	1580	55	5	528	5	CARD14	17	78157880	Missense_Mutation	SNP	T	TCGA-OL-A66K-01A-11D-A29N-09	5025617	78157880	3037330	24	77152										
CD93	0	genome.wustl.edu	37	chr20	23066315	23066315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	cgaagccctcaatgttacttCcgggggagcctgggctccca	12	14	1	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	20	23066315	23066315	C	T	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	missense	c.515	p.G172E	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin,pirsf_CD93/CD141	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	48	0	0	24	11	31.43	-	-	-	T	23066315	C	T	23066315	3	4	975	1	0	0	0	0	1	0	0	0	3076	855	30	2	1451	2	CD93	20	23066315	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09		23066315	39959205	25	77153										
CHEK2	0	genome.wustl.edu	37	chr22	29130481	29130481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	ttggtcctcaggttcttggtCctcaggaatagaatagagtt	11	7	3	2			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	22	29130481	29130481	C	G	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.229	p.D77H	1.000	superfamily_SMAD_FHA_domain	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	40	0	0	18	12	40	-	-	-	G	29130481	C	G	29130481	3	3	975	1	0	0	0	0	1	0	0	0	3364	855	30	2	1591	2	CHEK2	22	29130481	Missense_Mutation	SNP	C	TCGA-OL-A66K-01A-11D-A29N-09		29130481	22174085	26	77154										
AR	0	genome.wustl.edu	37	chrX	66943562	66943562	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcatcagttcacttttgaccTgctaatcaagtcacacatgg	7	11	4	1			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	X	66943562	66943562	T	A	SNP	AR	ENST00000374690	human	ensembl	69_37n	1	known	missense	c.2642	p.L881Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	39	0	0	35	8	18.6	-	-	-	A	66943562	T	A	66943562	3	1	975	1	0	0	0	0	1	0	0	0	838	1580	55	5	2696	5	AR	23	66943562	Missense_Mutation	SNP	T	TCGA-OL-A66K-01A-11D-A29N-09		66943562	88326998	27	77155										
ATP11C	0	genome.wustl.edu	37	chrX	138897073	138897073	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttttctcactcgctttgcAttttcaataatgtaaacagt	4	9	3	0			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	X	138897073	138897073	A	G	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	silent	c.399	p.N133	0.998	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	94	0	0	41	24	36.92	-	-	-	G	138897073	A	G	138897073	2	3	975	1	0	0	0	0	0	0	0	1	1125	214	8	5		5	ATP11C	23	138897073	Silent	SNP	A	TCGA-OL-A66K-01A-11D-A29N-09	71953511	138897073	16373487	28	77156										
AGBL4	0	genome.wustl.edu	37	chr1	49052811	49052811	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	acggccagttcctgctttcaCagcgtcccggttaaaggatg	11	12	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	49052811	49052811	C	G	SNP	AGBL4	ENST00000371839	human	ensembl	69_37n	-1	known	missense	c.1132	p.V378L	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094	37	0	0	27	18	40	-	-	-	G	49052811	C	G	49052811	3	3	976	1	0	0	0	0	1	0	0	0	377	478	17	4	395	4	AGBL4	1	49052811	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		49052811	200197810	1	77157										
ANGPTL3	0	genome.wustl.edu	37	chr1	63069994	63069994	+	RNA	DEL	A	A	-													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tatctgcaatgacaacttttAaaaatccgaatcccaaataa							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	63069994	63069994	A	-	DEL	ANGPTL3	ENST00000493994	human	ensembl	69_37n	1	putative	rna	NULL	NULL	0.617	-	-	-	no_errors	ANGPTL3	HGNC	ENSG00000132855	23	0	0	19	11	35.48	-	-	-	-	63069994	A	-	63069994	6	5	976	0	1	1	0	1	0	0	0	0	615	377	13	0		0	ANGPTL3	1	63069994	RNA	DEL	A	TCGA-PE-A5DC-01A-12D-A27P-09	14017183	63069994	186180627	2	77158										
FOXD3	0	genome.wustl.edu	37	chr1	63789409	63789409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gtccgaggacatgttcgacaAcggcagcttcctgcggcgcc	13	14	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	63789409	63789409	A	G	SNP	FOXD3	ENST00000371116	human	ensembl	69_37n	1	known	missense	c.680	p.N227S	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140	85	0	0	64	34	34.69	-	-	-	G	63789409	A	G	63789409	3	3	976	1	0	0	0	0	1	0	0	0	6044	43	2	5	682	5	FOXD3	1	63789409	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	719415	63789409	185461212	3	77159										
SLC44A5	0	genome.wustl.edu	37	chr1	75684231	75684231	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cgtgggatgtcatcaggtttTttcatggcccagtaataagt	11	7	3	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	75684231	75684231	T	C	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	silent	c.1473	p.K491	0.019	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	48	0	0	34	19	35.85	-	-	-	C	75684231	T	C	75684231	2	2	976	1	0	0	0	0	0	0	0	1	14728	1838	64	5		5	SLC44A5	1	75684231	Silent	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	11894822	75684231	173566390	4	77160										
SNAPIN	0	genome.wustl.edu	37	chr1	153633731	153633731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggaaacagcccgcaggagagCaatgctggattcgggaattt	14	8	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	153633731	153633731	C	T	SNP	SNAPIN	ENST00000368685	human	ensembl	69_37n	1	known	missense	c.365	p.A122V	1.000	pirsf_Snapin	pirsf_Snapin	-	no_errors	SNAPIN	HGNC	ENSG00000143553	33	0	0	18	7	28	-	-	-	T	153633731	C	T	153633731	3	4	976	1	0	0	0	0	1	0	0	0	14928	710	25	4	379	4	SNAPIN	1	153633731	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	77949500	153633731	95616890	5	77161										
ILF2	0	genome.wustl.edu	37	chr1	153634800	153634800	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccacggaaatgtctgtcaccAtgtaaagcccagtagcaggc	10	12	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	153634800	153634800	A	C	SNP	ILF2	ENST00000480213	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.068	-	-	-	no_errors	ILF2	HGNC	ENSG00000143621	50	0	0	39	31	44.29	-	-	-	C	153634800	A	C	153634800	1	2	976	0	1	0	0	0	0	0	0	0	7765	232	8	5		5	ILF2	1	153634800	RNA	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	1069	153634800	95615821	6	77162										
BCAN	0	genome.wustl.edu	37	chr1	156615885	156615885	+	Silent	SNP	C	C	A													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cccctgctggcagccctggtCctggcccaggctcctgcagc							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	156615885	156615885	C	A	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	silent	c.39	p.V13	0.103	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	73	0	0	50	23	31.51	-	-	-	A	156615885	C	A	156615885	2	1	976	1	0	0	0	0	0	0	0	1	1349	842	30	2		2	BCAN	1	156615885	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	2981085	156615885	92634736	7	77163	541	2								
BCAN	0	genome.wustl.edu	37	chr1	156615886	156615886	+	Missense_Mutation	SNP	C	C	A													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccctgctggcagccctggtcCtggcccaggctcctgcagct							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	156615886	156615886	C	A	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	1	known	missense	c.40	p.L14M	0.122	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	73	0	0	50	23	31.51	-	-	-	A	156615886	C	A	156615886	3	1	976	1	0	0	0	0	1	0	0	0	1349	680	24	4	42	4	BCAN	1	156615886	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	1	156615886	92634735	8	77164	541	2								
MAPKAPK2	0	genome.wustl.edu	37	chr1	206906058	206906058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tggaggctgcggctctggccCactgagccaccgcgccctcc	13	18	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	206906058	206906058	C	T	SNP	MAPKAPK2	ENST00000367103	human	ensembl	69_37n	1	known	missense	c.1198	p.H400Y	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889	62	0	0	34	22	39.29	-	-	-	T	206906058	C	T	206906058	3	4	976	1	0	0	0	0	1	0	0	0	9360	594	21	4	1294	4	MAPKAPK2	1	206906058	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	50290172	206906058	42344563	9	77165										
GPR137B	0	genome.wustl.edu	37	chr1	236341763	236341763	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tcagccttgttttcctgttgGtgaatttaacctgtgctgtg	10	8	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	236341763	236341763	G	C	SNP	GPR137B	ENST00000366592	human	ensembl	69_37n	1	known	missense	c.514	p.V172L	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585	119	0	0	157	26	14.21	-	-	-	C	236341763	G	C	236341763	3	2	976	1	0	0	0	0	1	0	0	0	6696	1261	44	4	524	4	GPR137B	1	236341763	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	29435705	236341763	12908858	10	77166										
OR2G6	0	genome.wustl.edu	37	chr1	248685080	248685080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gccttctggggaacactgccCtcatactagtatgttgtctg	10	11	3	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	1	248685080	248685080	C	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	1	known	missense	c.133	p.L45F	0.106	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	40	0	0	26	13	32.5	-	-	-	T	248685080	C	T	248685080	3	4	976	1	0	0	0	0	1	0	0	0	11073	681	24	4	135	4	OR2G6	1	248685080	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	12343317	248685080	565541	11	77167										
OTOF	0	genome.wustl.edu	37	chr2	26695482	26695482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggagtgagaggaggagccccCattgcacagcacacggcagc	15	12	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	26695482	26695482	C	G	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.3769	p.G1257R	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	28	0	0	28	10	26.32	-	-	-	G	26695482	C	G	26695482	3	3	976	1	0	0	0	0	1	0	0	0	11376	594	21	4	2477	4	OTOF	2	26695482	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		26695482	216503891	12	77168										
EHD3	0	genome.wustl.edu	37	chr2	31489541	31489541	+	Frame_Shift_Del	DEL	C	C	-													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agctgcctgcccacctcctgCccccgtccaagaggaaagtt							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	31489541	31489541	C	-	DEL	EHD3	ENST00000322054	human	ensembl	69_37n	1	known	frame_shift_del	c.1579	p.P528fs	1.000	smart_EPS15_homology,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	49	0	0	32	24	42.86	-	-	-	-	31489541	C	-	31489541	7	5	976	1	0	1	0	1	0	0	0	0	5014	739	26	0	1601	0	EHD3	2	31489541	Frame_Shift_Del	DEL	C	TCGA-PE-A5DC-01A-12D-A27P-09	4794059	31489541	211709832	13	77169										
CCDC85A	0	genome.wustl.edu	37	chr2	56420533	56420533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tcagacggcaggcacaggagGacgggtcaccccatcaccgg	14	14	3	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	56420533	56420533	G	A	SNP	CCDC85A	ENST00000407595	human	ensembl	69_37n	1	known	missense	c.1198	p.D400N	1.000	NULL	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813	77	0	0	46	24	34.29	-	-	-	A	56420533	G	A	56420533	3	1	976	1	0	0	0	0	1	0	0	0	2886	1174	41	2	1204	2	CCDC85A	2	56420533	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	24930992	56420533	186778840	14	77170										
VRK2	0	genome.wustl.edu	37	chr2	58366890	58366890	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tcaagaaaattttgaaccctCatggaatacctttaggacca	6	9	2	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	58366890	58366890	C	A	SNP	VRK2	ENST00000340157	human	ensembl	69_37n	1	known	missense	c.946	p.H316N	0.000	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	VRK2	HGNC	ENSG00000028116	47	0	0	26	17	39.53	-	-	-	A	58366890	C	A	58366890	3	1	976	1	0	0	0	0	1	0	0	0	17317	826	29	2	984	2	VRK2	2	58366890	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	1946357	58366890	184832483	15	77171										
SNRPG	0	genome.wustl.edu	37	chr2	70520828	70520828	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gccttggaacgcaacgcacgGctttcctcacgctcccgctg	10	17	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	70520828	70520828	G	C	SNP	SNRPG	ENST00000429728	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNRPG	HGNC	ENSG00000143977	24	0	0	32	11	25.58	-	-	-	C	70520828	G	C	70520828	1	2	976	0	1	0	0	0	0	0	0	0	14958	1218	42	4		4	SNRPG	2	70520828	RNA	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	12153938	70520828	172678545	16	77172										
ANKRD39	0	genome.wustl.edu	37	chr2	97514138	97514138	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccttcagggctgggctgtgtTgcaggaggagggagcagatg	19	7	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	97514138	97514138	T	A	SNP	ANKRD39	ENST00000393537	human	ensembl	69_37n	-1	known	missense	c.452	p.Q151L	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD39	HGNC	ENSG00000213337	56	0	0	35	20	36.36	-	-	-	A	97514138	T	A	97514138	3	1	976	1	0	0	0	0	1	0	0	0	667	1812	63	5	103	5	ANKRD39	2	97514138	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	26993310	97514138	145685235	17	77173										
ZAP70	0	genome.wustl.edu	37	chr2	98341118	98341118	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cttccgcaggctgagcgatgCtatggtgctctactatgcca	11	12	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	98341118	98341118	C	G	SNP	ZAP70	ENST00000463643	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	ZAP70	HGNC	ENSG00000115085	65	0	0	35	17	32.69	-	-	-	G	98341118	C	G	98341118	1	3	976	0	1	0	0	0	0	0	0	0	17611	812	28	4		4	ZAP70	2	98341118	RNA	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	826980	98341118	144858255	18	77174										
TBC1D8	0	genome.wustl.edu	37	chr2	101627398	101627398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agaaagtccatacctggctcAttttgggcaattctttctca	7	10	3	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	101627398	101627398	A	G	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	missense	c.3008	p.M1003T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	52	0	0	37	23	38.33	-	-	-	G	101627398	A	G	101627398	3	3	976	1	0	0	0	0	1	0	0	0	15720	217	8	5	467	5	TBC1D8	2	101627398	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	3286280	101627398	141571975	19	77175										
TMEM182	0	genome.wustl.edu	37	chr2	103378743	103378743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgggggtgttactctttttgGtggcttttggatcggattat	14	4	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	103378743	103378743	G	A	SNP	TMEM182	ENST00000412401	human	ensembl	69_37n	1	known	missense	c.67	p.V23M	1.000	NULL	NULL	-	no_errors	TMEM182	HGNC	ENSG00000170417	49	0	0	38	19	33.33	-	-	-	A	103378743	G	A	103378743	3	1	976	1	0	0	0	0	1	0	0	0	16196	1261	44	4	69	4	TMEM182	2	103378743	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	1751345	103378743	139820630	20	77176										
GPR39	0	genome.wustl.edu	37	chr2	133402929	133402929	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gctgcagcacgccaaccacgAgaagcgcctgcgcgtacatg	12	15	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	133402929	133402929	A	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	1	known	missense	c.1112	p.E371V	0.502	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	24	0	0	15	16	51.61	-	-	-	T	133402929	A	T	133402929	3	4	976	1	0	0	0	0	1	0	0	0	6743	304	11	5	1118	5	GPR39	2	133402929	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	30024186	133402929	109796444	21	77177										
NEB	0	genome.wustl.edu	37	chr2	152506885	152506885	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agccactcaaggtcagatttAtatagattctgtgaaaagac	8	7	3	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	152506885	152506885	A	G	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	silent	c.7236	p.Y2412	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	33	0	0	31	17	35.42	-	-	-	G	152506885	A	G	152506885	2	3	976	1	0	0	0	0	0	0	0	1	10374	456	16	5		5	NEB	2	152506885	Silent	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	19103956	152506885	90692488	22	77178										
CREB1	0	genome.wustl.edu	37	chr2	208441407	208441407	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aatttgaattctgaacgtcaGtttgaagatggtaacatgtt	9	4	2	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	208441407	208441407	G	A	SNP	CREB1	ENST00000494983	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CREB1	HGNC	ENSG00000118260	33	0	0	28	21	42.86	-	-	-	A	208441407	G	A	208441407	1	1	976	0	1	0	0	0	0	0	0	0	3884	1044	36	4		4	CREB1	2	208441407	RNA	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	55934522	208441407	34757966	23	77179										
SPHKAP	0	genome.wustl.edu	37	chr2	228855842	228855842	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tctggctccaggtcaaagttGatcaccagcaggctcctctg	10	13	4	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	228855842	228855842	G	C	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4833	p.I1611M	1.000	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	34	0	0	26	13	33.33	-	-	-	C	228855842	G	C	228855842	3	2	976	1	0	0	0	0	1	0	0	0	15139	1280	45	2	277	2	SPHKAP	2	228855842	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	20414435	228855842	14343531	24	77180										
NMUR1	0	genome.wustl.edu	37	chr2	232393177	232393177	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cagagcatggcaagaccccaGacggccccaagcactcggcg	12	16	0	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	232393177	232393177	G	A	SNP	NMUR1	ENST00000305141	human	ensembl	69_37n	-1	known	silent	c.555	p.V185	0.983	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMUR1	HGNC	ENSG00000171596	56	0	0	26	21	44.68	-	-	-	A	232393177	G	A	232393177	2	1	976	1	0	0	0	0	0	0	0	1	10578	929	33	2		2	NMUR1	2	232393177	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	3537335	232393177	10806196	25	77181										
UGT1A1	0	genome.wustl.edu	37	chr2	234669368	234669368	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tccctggcagaaagcagcttTgatgtcatgctgacggaccc	11	12	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	234669368	234669368	T	G	SNP	UGT1A1	ENST00000305208	human	ensembl	69_37n	1	known	missense	c.435	p.F145L	0.468	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635	45	0	0	28	13	31.71	-	-	-	G	234669368	T	G	234669368	3	3	976	1	0	0	0	0	1	0	0	0	17041	1809	63	5	437	5	UGT1A1	2	234669368	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	2276191	234669368	8530005	26	77182										
TRAF3IP1	0	genome.wustl.edu	37	chr2	239237696	239237696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aggccaaggagaatggcggaAacagacacagagaaggggag	17	6	0	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	2	239237696	239237696	A	C	SNP	TRAF3IP1	ENST00000373327	human	ensembl	69_37n	1	known	missense	c.628	p.N210H	0.749	pfam_Microtubule/TRAF3/DISC1-bd	pfam_Microtubule/TRAF3/DISC1-bd	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104	16	0	0	4	4	50	-	-	-	C	239237696	A	C	239237696	3	2	976	1	0	0	0	0	1	0	0	0	16536	14	1	5	646	5	TRAF3IP1	2	239237696	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	4568328	239237696	3961677	27	77183										
RPL32	0	genome.wustl.edu	37	chr3	12881039	12881039	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cgccagttacgctgaaggaaAtaatacacaggtgggttagc	12	8	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	12881039	12881039	A	G	SNP	RPL32	ENST00000273223	human	ensembl	69_37n	-1	novel	silent	c.141	p.Y47	0.003	pfam_Ribosomal_L32e,superfamily_Ribosomal_L32e	pfam_Ribosomal_L32e,superfamily_Ribosomal_L32e	-	no_errors	RPL32	HGNC	ENSG00000144713	76	0	0	76	23	23.23	-	-	-	G	12881039	A	G	12881039	2	3	976	1	0	0	0	0	0	0	0	1	13668	116	4	5		5	RPL32	3	12881039	Silent	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09		12881039	185141391	28	77184										
RBMS3	0	genome.wustl.edu	37	chr3	29476234	29476234	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	acagctttttctgtttccagCagtcctatgcaccagctccc	6	15	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	29476234	29476234	C	A	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	1	known	missense	c.76	p.Q26K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	42	0	0	53	28	34.57	-	-	-	A	29476234	C	A	29476234	3	1	976	1	0	0	0	0	1	0	0	0	13233	724	25	4	82	4	RBMS3	3	29476234	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	16595195	29476234	168546196	29	77185										
PTPN23	0	genome.wustl.edu	37	chr3	47449250	47449250	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agctgttacaggccctgacaTctttgccaaactggtaccca	8	13	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	47449250	47449250	T	C	SNP	PTPN23	ENST00000265562	human	ensembl	69_37n	1	known	missense	c.1067	p.I356T	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	49	0	0	26	7	21.21	-	-	-	C	47449250	T	C	47449250	3	2	976	1	0	0	0	0	1	0	0	0	12871	1435	50	5	1117	5	PTPN23	3	47449250	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	17973016	47449250	150573180	30	77186										
STAB1	0	genome.wustl.edu	37	chr3	52548716	52548716	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agcctccatccctctccccaGcctgaggtgaaccatgtgcc	8	18	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	52548716	52548716	G	T	SNP	STAB1	ENST00000321725	human	ensembl	69_37n	1	known	splice_site	c.3679-1	e35-1	1.000	-	-	-	no_errors	STAB1	HGNC	ENSG00000010327	29	0	0	9	11	55	-	-	-	T	52548716	G	T	52548716	5	4	976	1	0	0	0	0	0	0	1	0	15328	985	34	4	3816	4	STAB1	3	52548716	Splice_Site	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	5099466	52548716	145473714	31	77187										
GABRR3	0	genome.wustl.edu	37	chr3	97753780	97753780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agcagcacaaacatttggttTcaatatgatccagatgtagg	9	7	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	97753780	97753780	T	C	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	missense	c.52	p.K18E	0.001	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	48	0	0	46	12	20.69	-	-	-	C	97753780	T	C	97753780	3	2	976	1	0	0	0	0	1	0	0	0	6227	1792	62	5	1386	5	GABRR3	3	97753780	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	45205064	97753780	100268650	32	77188										
VPS8	0	genome.wustl.edu	37	chr3	184556530	184556530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agatgctggcttgcctacagCaattgtaagtatactttaac	8	8	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	3	184556530	184556530	C	G	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	1	known	missense	c.476	p.A159G	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	65	0	0	39	25	39.06	-	-	-	G	184556530	C	G	184556530	3	3	976	1	0	0	0	0	1	0	0	0	17315	710	25	4	494	4	VPS8	3	184556530	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	86802750	184556530	13465900	33	77189										
EPHA5	0	genome.wustl.edu	37	chr4	66280012	66280012	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aatgacttacacactggggtGgtttcaaactcaaatcttcg	8	9	3	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	4	66280012	66280012	G	T	SNP	EPHA5	ENST00000273854	human	ensembl	69_37n	-1	known	silent	c.1677	p.T559	1.000	superfamily_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	33	0	0	22	4	15.38	-	-	-	T	66280012	G	T	66280012	2	4	976	1	0	0	0	0	0	0	0	1	5207	1335	47	4		4	EPHA5	4	66280012	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		66280012	124874264	34	77190										
ANK2	0	genome.wustl.edu	37	chr4	114277295	114277295	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gaagtggcctctgtgcggtcCcggctactccgagaccctga	13	14	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	4	114277295	114277295	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	1	known	silent	c.7521	p.S2507	0.922	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	23	0	0	19	5	20.83	-	-	-	T	114277295	C	T	114277295	2	4	976	1	0	0	0	0	0	0	0	1	621	610	22	4		4	ANK2	4	114277295	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	47997283	114277295	76876981	35	77191										
FAT1	0	genome.wustl.edu	37	chr4	187539493	187539493	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgtctgtcaatcacaaaggaCtcatccctattgctttctgg	7	11	5	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	4	187539493	187539493	C	A	SNP	FAT1	ENST00000441802	human	ensembl	69_37n	-1	known	missense	c.8247	p.E2749D	0.007	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	25	0	0	27	13	32.5	-	-	-	A	187539493	C	A	187539493	3	1	976	1	0	0	0	0	1	0	0	0	5735	564	20	4	5591	4	FAT1	4	187539493	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	73262198	187539493	3614783	36	77192										
PDZD2	0	genome.wustl.edu	37	chr5	32089647	32089647	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gagggcagggcgccccgtgcTgactccgggccggtgagtcc	18	14	0	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	32089647	32089647	T	G	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	1	known	silent	c.6093	p.A2031	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	23	0	0	17	7	29.17	-	-	-	G	32089647	T	G	32089647	2	3	976	1	0	0	0	0	0	0	0	1	11774	1567	55	5		5	PDZD2	5	32089647	Silent	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09		32089647	148825613	37	77193										
ARHGAP26	0	genome.wustl.edu	37	chr5	142526879	142526879	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tccttaattccagcagcagcTtacagcccaacatgaactcc	5	15	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	142526879	142526879	T	G	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	1	known	missense	c.1921	p.L641V	0.700	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	35	0	0	33	14	29.79	-	-	-	G	142526879	T	G	142526879	3	3	976	1	0	0	0	0	1	0	0	0	877	1606	56	5	1999	5	ARHGAP26	5	142526879	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	110437232	142526879	38388381	38	77194										
RBM27	0	genome.wustl.edu	37	chr5	145651128	145651128	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aagaggccgagggcgtggagGaagaggaaggggctcactaa	19	6	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	145651128	145651128	G	T	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	1	known	missense	c.2879	p.G960V	0.903	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	42	0	0	30	4	11.76	-	-	-	T	145651128	G	T	145651128	3	4	976	1	0	0	0	0	1	0	0	0	13210	1174	41	2	2953	2	RBM27	5	145651128	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	3124249	145651128	35264132	39	77195										
CSF1R	0	genome.wustl.edu	37	chr5	149450043	149450043	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aagggtgagctcaaacgtcaGagctctccagcctcctgggt	12	12	3	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	149450043	149450043	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	silent	c.1174	p.L392	0.586	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	CSF1R	HGNC	ENSG00000182578	57	0	0	36	19	34.55	-	-	-	A	149450043	G	A	149450043	2	1	976	1	0	0	0	0	0	0	0	1	3964	933	33	2		2	CSF1R	5	149450043	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	3798915	149450043	31465217	40	77196										
FAT2	0	genome.wustl.edu	37	chr5	150922996	150922998	+	In_Frame_Del	DEL	TCC	TCC	-													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	accgtgcagaaggctactctTcctcctccatcccgagccat							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	150922996	150922998	TCC	-	DEL	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	in_frame_del	c.7692_7690	p.G2564in_frame_del	0.946:1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	64	0	0	30	13	30.23	-	-	-	-	150922998	TCC	-	150922996	7	5	976	1	0	1	0	1	0	0	0	0	5736	1770	62	0	5417	0	FAT2	5	150922996	In_Frame_Del	DEL	TCC	TCGA-PE-A5DC-01A-12D-A27P-09	1472953	150922996	29992264	41	77197										
ADAM19	0	genome.wustl.edu	37	chr5	156934141	156934141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gatggtggtgccgtggaaggAcatgcccctgcaggaggcaa	17	9	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	156934141	156934141	A	G	SNP	ADAM19	ENST00000394020	human	ensembl	69_37n	-1	known	missense	c.919	p.S307P	0.707	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	23	0	0	10	6	37.5	-	-	-	G	156934141	A	G	156934141	3	3	976	1	0	0	0	0	1	0	0	0	240	275	10	5	1899	5	ADAM19	5	156934141	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	6011145	156934141	23981119	42	77198										
FAF2	0	genome.wustl.edu	37	chr5	175875473	175875473	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gaagctgctgcagtttcaggTagcagcgagtactcggtgca	14	9	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	5	175875473	175875473	T	G	SNP	FAF2	ENST00000261942	human	ensembl	69_37n	1	known	splice_site	c.63+2	e1+2	1.000	-	-	-	no_errors	FAF2	HGNC	ENSG00000113194	78	0	0	38	32	45.71	-	-	-	G	175875473	T	G	175875473	5	3	976	1	0	0	0	0	0	0	1	0	5410	1652	57	5	67	5	FAF2	5	175875473	Splice_Site	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	18941332	175875473	5039787	43	77199										
RREB1	0	genome.wustl.edu	37	chr6	7249005	7249005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gagccggaaggagggcttggCcagtgccaccaaggactgca	16	11	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	6	7249005	7249005	C	G	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	1	known	missense	c.5033	p.A1678G	0.862	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	31	0	0	42	18	30	-	-	-	G	7249005	C	G	7249005	3	3	976	1	0	0	0	0	1	0	0	0	13765	739	26	4	5071	4	RREB1	6	7249005	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		7249005	163866062	44	77200										
EHMT2	0	genome.wustl.edu	37	chr6	31855981	31855981	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gggacagaagaccatcccatTcagctgagacacacaggcct	10	13	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	6	31855981	31855981	T	A	SNP	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	missense	c.1753	p.N585Y	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	21	0	0	12	7	36.84	-	-	-	A	31855981	T	A	31855981	3	1	976	1	0	0	0	0	1	0	0	0	5019	1783	62	5	2114	5	EHMT2	6	31855981	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	24606976	31855981	139259086	45	77201										
GPR116	0	genome.wustl.edu	37	chr6	46847554	46847554	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agttactgaatggagacctaCctgcatcacctggagtgatg	11	9	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	6	46847554	46847554	C	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	splice_site	c.1036+1	e8+1	0.983	-	-	-	no_errors	GPR116	HGNC	ENSG00000069122	59	0	0	49	32	39.51	-	-	-	A	46847554	C	A	46847554	5	1	976	1	0	0	0	0	0	0	1	0	6683	521	18	4	3055	4	GPR116	6	46847554	Splice_Site	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	14991573	46847554	124267513	46	77202										
NMBR	0	genome.wustl.edu	37	chr6	142399958	142399958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgccagcaacacggagaccaCccagatacccatggccttca	8	16	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	6	142399958	142399958	C	T	SNP	NMBR	ENST00000258042	human	ensembl	69_37n	-1	known	missense	c.505	p.V169M	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NMBR	HGNC	ENSG00000135577	38	0	0	19	9	32.14	-	-	-	T	142399958	C	T	142399958	3	4	976	1	0	0	0	0	1	0	0	0	10559	507	18	4	675	4	NMBR	6	142399958	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	95552404	142399958	28715109	47	77203										
SCIN	0	genome.wustl.edu	37	chr7	12611252	12611252	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctggcgtcctcagatagaagTaagaaaaaaatacagatatt	8	6	1	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	12611252	12611252	T	C	SNP	SCIN	ENST00000417018	human	ensembl	69_37n	1	novel	splice_site	c.280+2	e2+2	0.000	-	-	-	no_stop_codon:bad_bp_length_for_coding_region	SCIN	HGNC	ENSG00000006747	9	0	0	13	4	23.53	-	-	-	C	12611252	T	C	12611252	5	2	976	1	0	0	0	0	0	0	1	0	13993	1653	57	5		5	SCIN	7	12611252	Splice_Site	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09		12611252	146527411	48	77204										
GRM3	0	genome.wustl.edu	37	chr7	86493602	86493602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccactttgttttccagcctcTgcaagcacgtatgtgccaac	7	14	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	86493602	86493602	T	C	SNP	GRM3	ENST00000394720	human	ensembl	69_37n	1	known	missense	c.1498	p.C500R	0.989	NULL	pfam_ANF_lig-bd_rcpt,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt	-	no_errors	GRM3	HGNC	ENSG00000198822	54	0	0	42	20	32.26	-	-	-	C	86493602	T	C	86493602	3	2	976	1	0	0	0	0	1	0	0	0	6849	1567	55	5	2589	5	GRM3	7	86493602	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	73882350	86493602	72645061	49	77205										
PON3	0	genome.wustl.edu	37	chr7	94991698	94991698	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gatcctggagggtcctcaggGttatagttcagtagcttcat	12	8	3	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	94991698	94991698	G	C	SNP	PON3	ENST00000265627	human	ensembl	69_37n	-1	known	missense	c.882	p.N294K	1.000	pfam_SGL,prints_Paraoxonase2	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	41	0	0	9	11	55	-	-	-	C	94991698	G	C	94991698	3	2	976	1	0	0	0	0	1	0	0	0	12324	1252	44	4	190	4	PON3	7	94991698	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	8498096	94991698	64146965	50	77206										
ZAN	0	genome.wustl.edu	37	chr7	100364817	100364817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	atcctggaggtctcctacatCaaagccgtccacgtgacagt	9	13	2	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	100364817	100364817	C	G	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	1	known	missense	c.4797	p.I1599M	0.895	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	42	0	0	31	9	22.5	-	-	-	G	100364817	C	G	100364817	3	3	976	1	0	0	0	0	1	0	0	0	17610	816	29	2	4891	2	ZAN	7	100364817	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	5373119	100364817	58773846	51	77207										
LAMB1	0	genome.wustl.edu	37	chr7	107618513	107618513	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tttacaggcgttgctgtttcGgccttcagcaggtctccaag	11	11	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	107618513	107618513	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	nonsense	c.979	p.R327*	1.000	smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	53	0	0	30	4	11.76	-	-	-	A	107618513	G	A	107618513	4	1	976	1	0	0	0	0	0	1	0	0	8664	1124	39	1	4485	1	LAMB1	7	107618513	Nonsense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	7253696	107618513	51520150	52	77208										
NRCAM	0	genome.wustl.edu	37	chr7	107831699	107831699	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aagactcatattagtttaccGtaaacgggagctggagttgg	12	6	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	107831699	107831699	G	A	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	silent	c.1932	p.Y644	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	29	0	0	7	7	50	-	-	-	A	107831699	G	A	107831699	2	1	976	1	0	0	0	0	0	0	0	1	10717	1159	40	1		1	NRCAM	7	107831699	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	213186	107831699	51306964	53	77209										
CTTNBP2	0	genome.wustl.edu	37	chr7	117450855	117450855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tcagcagcagccagctgtgcGgacatcctttcttgcatttt	9	12	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	117450855	117450855	G	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	silent	c.378	p.S126	0.988	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	74	0	0	63	12	16	-	-	-	A	117450855	G	A	117450855	2	1	976	1	0	0	0	0	0	0	0	1	4077	1103	39	1		1	CTTNBP2	7	117450855	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	9619156	117450855	41687808	54	77210										
SLC4A2	0	genome.wustl.edu	37	chr7	150761400	150761400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aggagatcctacaggaggccGggtctcgtggaggggaggag	20	7	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	7	150761400	150761400	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	69_37n	1	known	missense	c.163	p.G55R	0.750	prints_Anion_exchange_2	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889	34	0	0	30	14	31.82	-	-	-	A	150761400	G	A	150761400	3	1	976	1	0	0	0	0	1	0	0	0	14743	1116	39	1	169	1	SLC4A2	7	150761400	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	33310545	150761400	8377263	55	77211										
CDH17	0	genome.wustl.edu	37	chr8	95164236	95164236	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tctgtcacaataagcgtgaaCttggcaaaagaacttgcatt	8	8	2	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	8	95164236	95164236	C	G	SNP	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	missense	c.1656	p.K552N	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	83	0	0	88	27	23.48	-	-	-	G	95164236	C	G	95164236	3	3	976	1	0	0	0	0	1	0	0	0	3131	564	20	4	866	4	CDH17	8	95164236	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		95164236	51199786	56	77212										
PKHD1L1	0	genome.wustl.edu	37	chr8	110491846	110491846	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tatactgtacctcacccaggGgcaaatgtgattatacctga	8	10	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	8	110491846	110491846	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	1	known	silent	c.9156	p.G3052	1.000	pfam_G8_domain	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	39	0	0	46	17	26.98	-	-	-	C	110491846	G	C	110491846	2	2	976	1	0	0	0	0	0	0	0	1	12046	1219	43	4		4	PKHD1L1	8	110491846	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	15327610	110491846	35872176	57	77213										
PRUNE2	0	genome.wustl.edu	37	chr9	79229449	79229449	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	atatgtttcaacagaaccatGaaccagaaaagcatcctctt	5	10	2	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	9	79229449	79229449	G	A	SNP	PRUNE2	ENST00000464414	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PRUNE2	HGNC	ENSG00000106772	21	0	0	12	8	40	-	-	-	A	79229449	G	A	79229449	1	1	976	0	1	0	0	0	0	0	0	0	12721	1305	45	2		2	PRUNE2	9	79229449	RNA	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		79229449	61983982	58	77214										
HSD17B3	0	genome.wustl.edu	37	chr9	99006675	99006675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tggaaaatgcgcacacaaacGcctggagcaagaaggagaga	13	8	0	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	9	99006675	99006675	G	A	SNP	HSD17B3	ENST00000375263	human	ensembl	69_37n	-1	known	missense	c.608	p.A203V	1.000	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B3	HGNC	ENSG00000130948	42	0	0	26	19	42.22	-	-	-	A	99006675	G	A	99006675	3	1	976	1	0	0	0	0	1	0	0	0	7436	1101	38	1	336	1	HSD17B3	9	99006675	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	19777226	99006675	42206756	59	77215										
ZNF462	0	genome.wustl.edu	37	chr9	109689355	109689355	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cattatcagaagaaacacccCgaagaaaaggcttcctactt	6	11	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	9	109689355	109689355	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	1	known	silent	c.3162	p.P1054	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	27	0	0	28	13	31.71	-	-	-	T	109689355	C	T	109689355	2	4	976	1	0	0	0	0	0	0	0	1	18022	639	23	1		1	ZNF462	9	109689355	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	10682680	109689355	31524076	60	77216										
CIZ1	0	genome.wustl.edu	37	chr9	130942759	130942759	+	Frame_Shift_Del	DEL	T	T	-													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggctcaggtgctggagtgcgTttttccttggcgatgtcctc							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	9	130942759	130942759	T	-	DEL	CIZ1	ENST00000538431	human	ensembl	69_37n	-1	known	frame_shift_del	c.726	p.K242fs	0.001	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337	53	0	0	28	19	40.43	-	-	-	-	130942759	T	-	130942759	7	5	976	1	0	1	0	1	0	0	0	0	3471	1722	60	0	2014	0	CIZ1	9	130942759	Frame_Shift_Del	DEL	T	TCGA-PE-A5DC-01A-12D-A27P-09	21253404	130942759	10270672	61	77217										
ABCA2	0	genome.wustl.edu	37	chr9	139910561	139910561	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggatctcatccatctccgtgCggatgtcgtgcccgtagatg	12	12	2	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	9	139910561	139910561	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	69_37n	-1	known	missense	c.3170	p.R1057H	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331	61	0	0	55	24	30.38	-	-	-	T	139910561	C	T	139910561	3	4	976	1	0	0	0	0	1	0	0	0	32	768	27	1	4252	1	ABCA2	9	139910561	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	8967802	139910561	1302870	62	77218										
PRKG1	0	genome.wustl.edu	37	chr10	54048489	54048489	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gtctctcattcttgcagcccAcctttctcaggcccagatcc	6	17	4	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	10	54048489	54048489	A	G	SNP	PRKG1	ENST00000373980	human	ensembl	69_37n	1	known	silent	c.1713	p.P571	0.959	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	37	0	0	15	16	51.61	-	-	-	G	54048489	A	G	54048489	2	3	976	1	0	0	0	0	0	0	0	1	12603	146	6	5		5	PRKG1	10	54048489	Silent	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09		54048489	81486258	63	77219										
ECD	0	genome.wustl.edu	37	chr10	74923576	74923576	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gcaaaccgagtgattattctCtcaatgtacttctgaagaat	7	8	3	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	10	74923576	74923576	C	T	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	silent	c.120	p.E40	0.140	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882	47	0	0	29	17	36.96	-	-	-	T	74923576	C	T	74923576	2	4	976	1	0	0	0	0	0	0	0	1	4923	912	32	2		2	ECD	10	74923576	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	20875087	74923576	60611171	64	77220										
OAT	0	genome.wustl.edu	37	chr10	126090320	126090320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gggctgcgatggccactcggCagcctagtggattgccaccg	15	13	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	10	126090320	126090320	C	T	SNP	OAT	ENST00000368845	human	ensembl	69_37n	-1	known	missense	c.989	p.C330Y	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Orn_aminotrans	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Orn_aminotrans	-	no_errors	OAT	HGNC	ENSG00000065154	40	0	0	25	16	39.02	-	-	-	T	126090320	C	T	126090320	3	4	976	1	0	0	0	0	1	0	0	0	10876	710	25	4	342	4	OAT	10	126090320	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	51166744	126090320	9444427	65	77221										
MOB2	0	genome.wustl.edu	37	chr11	1492541	1492541	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gaaccgtattttgtggggaaCacgtcctcatccgtcaccag	10	12	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	11	1492541	1492541	C	A	SNP	MOB2	ENST00000329957	human	ensembl	69_37n	-1	novel	silent	c.474	p.V158	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB2	HGNC	ENSG00000182208	87	0	0	49	18	26.87	-	-	-	A	1492541	C	A	1492541	2	1	976	1	0	0	0	0	0	0	0	1	9753	465	17	4		4	MOB2	11	1492541	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		1492541	133513975	66	77222										
SPON1	0	genome.wustl.edu	37	chr11	14280995	14280995	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgcacggtcaacgaggagtgCtgtgagtgggggccccgggc	19	10	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	11	14280995	14280995	C	T	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	29	0	0	27	11	28.95	-	-	-	T	14280995	C	T	14280995	1	4	976	0	1	0	0	0	0	0	0	0	15173	811	28	4		4	SPON1	11	14280995	RNA	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	12788454	14280995	120725521	67	77223										
OR4C13	0	genome.wustl.edu	37	chr11	49974581	49974581	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tcattgctgccaacagtgggTtcatatgcctgttaaactgt	9	9	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	11	49974581	49974581	T	C	SNP	OR4C13	ENST00000555099	human	ensembl	69_37n	1	known	missense	c.607	p.F203L	0.012	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C13	HGNC	ENSG00000258817	87	0	0	66	42	38.89	-	-	-	C	49974581	T	C	49974581	3	2	976	1	0	0	0	0	1	0	0	0	11120	1725	60	5	609	5	OR4C13	11	49974581	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	35693586	49974581	85031935	68	77224										
PYGM	0	genome.wustl.edu	37	chr11	64519463	64519463	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tattcgtgaatccgcttcacCtggatgtcgaagagtgagtt	11	8	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	11	64519463	64519463	C	G	SNP	PYGM	ENST00000164139	human	ensembl	69_37n	-1	known	missense	c.1701	p.Q567H	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	97	0	0	61	34	35.79	-	-	-	G	64519463	C	G	64519463	3	3	976	1	0	0	0	0	1	0	0	0	12945	680	24	4	855	4	PYGM	11	64519463	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	14544882	64519463	70487053	69	77225										
KCNA1	0	genome.wustl.edu	37	chr12	5020749	5020749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgctgggcaaccctaagaaaCgcatgcgctacttcgacccc	9	15	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	5020749	5020749	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	1	known	missense	c.205	p.R69C	0.999	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	74	0	0	63	41	39.42	-	-	-	T	5020749	C	T	5020749	3	4	976	1	0	0	0	0	1	0	0	0	8055	536	19	1	207	1	KCNA1	12	5020749	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		5020749	128831146	70	77226										
TUBA1C	0	genome.wustl.edu	37	chr12	49666681	49666681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccatcaaaaccaagcgtaccAtccagtttgtggattggtgc	9	11	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	49666681	49666681	A	T	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	1	known	missense	c.1021	p.I341F	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	85	0	0	66	28	29.79	-	-	-	T	49666681	A	T	49666681	3	4	976	1	0	0	0	0	1	0	0	0	16842	217	8	5	1035	5	TUBA1C	12	49666681	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	44645932	49666681	84185214	71	77227										
TENC1	0	genome.wustl.edu	37	chr12	53451843	53451843	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ccctggtccccagcagctttGcatcagcctggagccagccc	10	18	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	53451843	53451843	G	C	SNP	TENC1	ENST00000314276	human	ensembl	69_37n	1	known	missense	c.1082	p.C361S	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	16	0	0	12	5	29.41	-	-	-	C	53451843	G	C	53451843	3	2	976	1	0	0	0	0	1	0	0	0	15853	1319	46	4	1215	4	TENC1	12	53451843	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	3785162	53451843	80400052	72	77228										
ALDH1L2	0	genome.wustl.edu	37	chr12	105418256	105418256	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tattcatttagagcttcctcAcctagggaagagaaaagcag	9	8	2	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	105418256	105418256	A	C	SNP	ALDH1L2	ENST00000258494	human	ensembl	69_37n	-1	known	silent	c.2718	p.G906	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010	41	0	0	30	14	31.82	-	-	-	C	105418256	A	C	105418256	2	2	976	1	0	0	0	0	0	0	0	1	495	173	6	5		5	ALDH1L2	12	105418256	Silent	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	51966413	105418256	28433639	73	77229										
UBE3B	0	genome.wustl.edu	37	chr12	109928922	109928922	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctttaacagcagctttttctCtagcgttacggtgagtaaga	9	8	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	109928922	109928922	C	G	SNP	UBE3B	ENST00000342494	human	ensembl	69_37n	1	known	missense	c.703	p.L235V	0.915	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	56	0	0	27	7	20.59	-	-	-	G	109928922	C	G	109928922	3	3	976	1	0	0	0	0	1	0	0	0	16977	912	32	2	729	2	UBE3B	12	109928922	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	4510666	109928922	23922973	74	77230										
TRIAP1	0	genome.wustl.edu	37	chr12	120882406	120882406	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tacaaggtatatttatgtaaAgctgattccacgccaagtat	7	7	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	120882406	120882406	A	C	SNP	TRIAP1	ENST00000302432	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.441	-	-	-	no_errors	TRIAP1	HGNC	ENSG00000170855	48	0	0	13	10	43.48	-	-	-	C	120882406	A	C	120882406	1	2	976	0	1	0	0	0	0	0	0	0	16577	87	3	5		5	TRIAP1	12	120882406	RNA	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	10953484	120882406	12969489	75	77231										
LRRC43	0	genome.wustl.edu	37	chr12	122669297	122669297	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	acaccttcttctactcctacTtccggtccctgcgggtaata	6	15	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	122669297	122669297	T	G	SNP	LRRC43	ENST00000339777	human	ensembl	69_37n	1	known	missense	c.382	p.F128V	1.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113	45	0	0	42	20	32.26	-	-	-	G	122669297	T	G	122669297	3	3	976	1	0	0	0	0	1	0	0	0	9067	1609	56	5	388	5	LRRC43	12	122669297	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	1786891	122669297	11182598	76	77232										
DNAH10	0	genome.wustl.edu	37	chr12	124414288	124414288	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aggatcccgtggggcagcctCaagtacctaattggagaggt	14	9	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	12	124414288	124414288	C	G	SNP	DNAH10	ENST00000409039	human	ensembl	69_37n	1	known	silent	c.12240	p.L4080	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_PyrdxlP-dep_Trfase_major_dom,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	15	0	0	20	10	33.33	-	-	-	G	124414288	C	G	124414288	2	3	976	1	0	0	0	0	0	0	0	1	4634	813	29	2		2	DNAH10	12	124414288	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	1744991	124414288	9437607	77	77233										
RNF17	0	genome.wustl.edu	37	chr13	25418854	25418854	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aacctgttaaatgggaaaatGatatgcactgtgctgttaag	10	5	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	13	25418854	25418854	G	A	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.2896	p.D966N	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	26	0	0	20	6	23.08	-	-	-	A	25418854	G	A	25418854	3	1	976	1	0	0	0	0	1	0	0	0	13547	1290	45	2	2978	2	RNF17	13	25418854	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		25418854	89751024	78	77234			1	127		5	5	270	G		3.920363e-14
RNF17	0	genome.wustl.edu	37	chr13	25418881	25418881	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	actgtgctgttaagatccaaGataaaaatcagtggcgaaga	10	6	1	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	13	25418881	25418881	G	C	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.2923	p.D975H	0.988	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	34	0	0	21	7	25	-	-	-	C	25418881	G	C	25418881	3	2	976	1	0	0	0	0	1	0	0	0	13547	942	33	2	3005	2	RNF17	13	25418881	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	27	25418881	89750997	79	77235			1	127		5	5	270	G		3.920363e-14
RNF17	0	genome.wustl.edu	37	chr13	25418926	25418926	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agatcatcagaatggttacaGacacattggtagaggtaaat	10	5	2	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	13	25418926	25418926	G	C	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.2968	p.D990H	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	31	0	0	19	8	29.63	-	-	-	C	25418926	G	C	25418926	3	2	976	1	0	0	0	0	1	0	0	0	13547	942	33	2	3050	2	RNF17	13	25418926	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	45	25418926	89750952	80	77236			1	127		5	5	270	G		3.920363e-14
RNF17	0	genome.wustl.edu	37	chr13	25419111	25419111	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tttcttaggtcttgctgtatGatgtgggtgttgaactagta	12	4	2	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	13	25419111	25419111	G	T	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.2995	p.D999Y	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	67	0	0	38	15	28.3	-	-	-	T	25419111	G	T	25419111	3	4	976	1	0	0	0	0	1	0	0	0	13547	1290	45	2	3081	2	RNF17	13	25419111	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	185	25419111	89750767	81	77237			1	127		5	5	270	G		3.920363e-14
RNF17	0	genome.wustl.edu	37	chr13	25419123	25419123	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tgctgtatgatgtgggtgttGaactagtagtgaatgttgac	14	3	0	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	13	25419123	25419123	G	A	SNP	RNF17	ENST00000255324	human	ensembl	69_37n	1	known	missense	c.3007	p.E1003K	0.998	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	63	0	0	42	15	26.32	-	-	-	A	25419123	G	A	25419123	3	1	976	1	0	0	0	0	1	0	0	0	13547	1291	45	2	3093	2	RNF17	13	25419123	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	12	25419123	89750755	82	77238			1	127		5	5	270	G		3.920363e-14
SIX4	0	genome.wustl.edu	37	chr14	61190202	61190202	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gctcccagcggccggccgcgGgctcgctcggcctcggtgta	16	17	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	14	61190202	61190202	G	T	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	silent	c.591	p.A197	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	69	0	0	32	42	56.76	-	-	-	T	61190202	G	T	61190202	2	4	976	1	0	0	0	0	0	0	0	1	14438	1219	43	4		4	SIX4	14	61190202	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		61190202	46159338	83	77239										
SERPINA5	0	genome.wustl.edu	37	chr14	95053962	95053962	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gggggctgggtccagcacaaAgatgcagatcctggagggcc	17	10	0	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	14	95053962	95053962	A	G	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	1	known	missense	c.263	p.K88R	0.003	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	20	0	0	8	12	60	-	-	-	G	95053962	A	G	95053962	3	3	976	1	0	0	0	0	1	0	0	0	14180	72	3	5	265	5	SERPINA5	14	95053962	Missense_Mutation	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	33863760	95053962	12295578	84	77240										
C15orf55	0	genome.wustl.edu	37	chr15	34640421	34640421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctggggctggcaaggtcattGtcaaagtcaagacagaaggg	15	7	3	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	15	34640421	34640421	G	T	SNP	C15orf55	ENST00000333756	human	ensembl	69_37n	1	known	missense	c.268	p.V90F	0.994	NULL	NULL	-	no_errors	C15orf55	HGNC	ENSG00000184507	28	0	0	19	10	34.48	-	-	-	T	34640421	G	T	34640421	3	4	976	1	0	0	0	0	1	0	0	0	1815	1377	48	4	274	4	C15orf55	15	34640421	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		34640421	67890971	85	77241										
ZFYVE19	0	genome.wustl.edu	37	chr15	41105030	41105030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cttgagttgcgggaggagaaCacgaggcaggaacggattct	16	7	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	15	41105030	41105030	C	T	SNP	ZFYVE19	ENST00000561617	human	ensembl	69_37n	1	novel	missense	c.742	p.H248Y	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE19	HGNC	ENSG00000166140	60	0	0	45	18	28.57	-	-	-	T	41105030	C	T	41105030	3	4	976	1	0	0	0	0	1	0	0	0	17761	477	17	4	986	4	ZFYVE19	15	41105030	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	6464609	41105030	61426362	86	77242										
MAP1A	0	genome.wustl.edu	37	chr15	43814751	43814751	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	aaggagttagccaagacagaGaagaaggcaaaagagtcatc	12	6	1	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	15	43814751	43814751	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	69_37n	1	known	silent	c.1080	p.E360	0.991	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	29	0	0	14	11	44	-	-	-	A	43814751	G	A	43814751	2	1	976	1	0	0	0	0	0	0	0	1	9298	933	33	2		2	MAP1A	15	43814751	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	2709721	43814751	58716641	87	77243										
BAIAP3	0	genome.wustl.edu	37	chr16	1395284	1395284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tggccctggctggcatccacGcccccttcctgcctgctgtg	11	18	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	16	1395284	1395284	G	T	SNP	BAIAP3	ENST00000324385	human	ensembl	69_37n	1	known	missense	c.2080	p.A694S	0.001	NULL	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	BAIAP3	HGNC	ENSG00000007516	60	0	0	60	32	34.78	-	-	-	T	1395284	G	T	1395284	3	4	976	1	0	0	0	0	1	0	0	0	1308	1087	38	3	2166	3	BAIAP3	16	1395284	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		1395284	88959469	88	77244										
CDH1	0	genome.wustl.edu	37	chr16	68856094	68856094	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gcagaactaacacacggggcGagtgccaactggaccattca	11	12	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	16	68856094	68856094	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	silent	c.1902	p.A634	0.170	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	43	0	0	23	7	23.33	-	-	-	A	68856094	G	A	68856094	2	1	976	1	0	0	0	0	0	0	0	1	3124	1045	37	1		1	CDH1	16	68856094	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	67460810	68856094	21498659	89	77245										
CCDC144A	0	genome.wustl.edu	37	chr17	16638398	16638398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gacagcaagagacctaaaacTtgatttccagagaacaagac	8	9	0	4			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	16638398	16638398	T	C	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	1	known	missense	c.2813	p.L938P	0.992	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	74	0	0	39	30	43.48	-	-	-	C	16638398	T	C	16638398	3	2	976	1	0	0	0	0	1	0	0	0	2802	1609	56	5	2859	5	CCDC144A	17	16638398	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09		16638398	64556812	90	77246										
MYO15A	0	genome.wustl.edu	37	chr17	18075556	18075556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gctgtgccagccccttgcatCcttgccatcaaccacaatgg	8	16	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	18075556	18075556	C	T	SNP	MYO15A	ENST00000451725	human	ensembl	69_37n	1	known	missense	c.683	p.S228F	1.000	NULL	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	32	0	0	22	9	29.03	-	-	-	T	18075556	C	T	18075556	3	4	976	1	0	0	0	0	1	0	0	0	10135	845	30	2	10548	2	MYO15A	17	18075556	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	1437158	18075556	63119654	91	77247										
TMEM132E	0	genome.wustl.edu	37	chr17	32953280	32953280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cgcggcccccgtcacccgcgGtcgccaacagctctctgcag	11	20	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	32953280	32953280	G	T	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	1	known	missense	c.202	p.V68F	0.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	65	0	0	47	31	39.74	-	-	-	T	32953280	G	T	32953280	3	4	976	1	0	0	0	0	1	0	0	0	16143	1261	44	4	208	4	TMEM132E	17	32953280	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	14877724	32953280	48241930	92	77248										
NR1D1	0	genome.wustl.edu	37	chr17	38253556	38253556	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	taggtgggacagccttgggtCagggactggaagctgccatt	16	8	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	38253556	38253556	C	A	SNP	NR1D1	ENST00000246672	human	ensembl	69_37n	-1	known	silent	c.132	p.L44	0.994	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368	62	0	0	30	20	40	-	-	-	A	38253556	C	A	38253556	2	1	976	1	0	0	0	0	0	0	0	1	10688	813	29	2		2	NR1D1	17	38253556	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	5300276	38253556	42941654	93	77249										
SPAG9	0	genome.wustl.edu	37	chr17	49075939	49075939	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ttaacaggtggttcaggcttCttagtcgtgttacttgagga	12	6	2	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	49075939	49075939	C	T	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	silent	c.1704	p.K568	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	61	0	0	37	19	33.93	-	-	-	T	49075939	C	T	49075939	2	4	976	1	0	0	0	0	0	0	0	1	15076	912	32	2		2	SPAG9	17	49075939	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	10822383	49075939	32119271	94	77250										
TLK2	0	genome.wustl.edu	37	chr17	60598145	60598145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ttctttcagggaccacttaaTagtgagtcttccaaccagag	8	10	3	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	60598145	60598145	T	G	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	1	known	missense	c.93	p.N31K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	52	0	0	45	27	37.5	-	-	-	G	60598145	T	G	60598145	3	3	976	1	0	0	0	0	1	0	0	0	16039	1403	49	5	99	5	TLK2	17	60598145	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	11522206	60598145	20597065	95	77251										
KCNH6	0	genome.wustl.edu	37	chr17	61613419	61613419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gtcttctccatctgcgtcatGctcatcggctgtgagtgaga	11	11	5	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	17	61613419	61613419	G	T	SNP	KCNH6	ENST00000583023	human	ensembl	69_37n	1	known	missense	c.1491	p.M497I	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_2pore_dom_K_chnl	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	91	0	0	69	29	29.59	-	-	-	T	61613419	G	T	61613419	3	4	976	1	0	0	0	0	1	0	0	0	8090	1319	46	4	1513	4	KCNH6	17	61613419	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	1015274	61613419	19581791	96	77252										
TSHZ1	0	genome.wustl.edu	37	chr18	72999753	72999753	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cctgtgaagcaggccgatgcCatcgaccgctactattatga	10	12	0	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	18	72999753	72999753	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	1	known	silent	c.2391	p.A797	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	19	0	0	13	5	27.78	-	-	-	T	72999753	C	T	72999753	2	4	976	1	0	0	0	0	0	0	0	1	16719	581	21	4		4	TSHZ1	18	72999753	Silent	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		72999753	5077495	97	77253										
SBNO2	0	genome.wustl.edu	37	chr19	1127657	1127657	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cagatggtggacacctggttGaggctgtcagccggcaggaa	16	9	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	19	1127657	1127657	G	A	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	silent	c.387	p.L129	1.000	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	47	0	0	30	7	18.92	-	-	-	A	1127657	G	A	1127657	2	1	976	1	0	0	0	0	0	0	0	1	13950	1277	45	2		2	SBNO2	19	1127657	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		1127657	58001326	98	77254										
PRAM1	0	genome.wustl.edu	37	chr19	8564204	8564204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gctgcaggggtttccgggccGgcgcaccaggctccggcagc	17	15	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	19	8564204	8564204	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	missense	c.488	p.P163L	0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	24	0	0	31	15	32.61	-	-	-	A	8564204	G	A	8564204	3	1	976	1	0	0	0	0	1	0	0	0	12500	1116	39	1	1557	1	PRAM1	19	8564204	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	7436547	8564204	50564779	99	77255										
ZNF91	0	genome.wustl.edu	37	chr19	23578125	23578125	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	acgtcgcacctggcagtctcAccatttctaggcttccaggg	10	14	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	19	23578125	23578125	A	C	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	splice_site	c.30+2	e1+2	0.099	-	-	-	no_errors	ZNF91	HGNC	ENSG00000167232	45	0	0	51	19	27.14	-	-	-	C	23578125	A	C	23578125	5	2	976	1	0	0	0	0	0	0	1	0	18293	173	6	5	3559	5	ZNF91	19	23578125	Splice_Site	SNP	A	TCGA-PE-A5DC-01A-12D-A27P-09	15013921	23578125	35550858	100	77256										
RDH13	0	genome.wustl.edu	37	chr19	55558755	55558755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	caggctgggaggggactcacCgagtgtggtgctggagaagg	20	7	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	19	55558755	55558755	C	T	SNP	RDH13	ENST00000415061	human	ensembl	69_37n	-1	known	missense	c.760	p.G254R	0.994	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439	73	0	0	66	30	31.25	-	-	-	T	55558755	C	T	55558755	3	4	976	1	0	0	0	0	1	0	0	0	13275	666	23	1	243	1	RDH13	19	55558755	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	31980630	55558755	3570228	101	77257										
CSNK2A1	0	genome.wustl.edu	37	chr20	472933	472934	+	Frame_Shift_Ins	INS	-	-	C													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agctcaggacctttgaagtaINStcgggaagcaactcggacat							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	472933	472934	-	C	INS	CSNK2A1	ENST00000217244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.586_585	p.Y195fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266	27	0	0	27	6	18.18	-	-	-	C	472934	-	C	472933	7	5	976	1	0	1	1	0	0	0	0	0	3989	449	16	0	613	0	CSNK2A1	20	472933	Frame_Shift_Ins	INS	-	TCGA-PE-A5DC-01A-12D-A27P-09		472933	62552587	102	77258										
CST9L	0	genome.wustl.edu	37	chr20	23546647	23546647	+	Silent	SNP	G	G	A													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctttcttggaaatggcagttGtcaatgtcgtcttcaaattt							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	23546647	23546647	G	A	SNP	CST9L	ENST00000376979	human	ensembl	69_37n	-1	known	silent	c.318	p.D106	0.380	pfam_Prot_inh_cystat	pfam_Prot_inh_cystat	-	no_errors	CST9L	HGNC	ENSG00000101435	107	0	0	65	14	17.72	-	-	-	A	23546647	G	A	23546647	2	1	976	1	0	0	0	0	0	0	0	1	4012	1368	48	4		4	CST9L	20	23546647	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	23073714	23546647	39478873	103	77259	542	2								
CST9L	0	genome.wustl.edu	37	chr20	23546655	23546655	+	Missense_Mutation	SNP	C	C	T													0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gaaatggcagttgtcaatgtCgtcttcaaatttcccacacc							TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	23546655	23546655	C	T	SNP	CST9L	ENST00000376979	human	ensembl	69_37n	-1	known	missense	c.310	p.D104N	0.000	pfam_Prot_inh_cystat	pfam_Prot_inh_cystat	-	no_errors	CST9L	HGNC	ENSG00000101435	103	0	0	57	13	18.57	-	-	-	T	23546655	C	T	23546655	3	4	976	1	0	0	0	0	1	0	0	0	4012	884	31	1	141	1	CST9L	20	23546655	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	8	23546655	39478865	104	77260	542	2								
KIAA1755	0	genome.wustl.edu	37	chr20	36868033	36868033	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agggtggggcctctttctggGgagcctgcagaagcttctgg	17	9	3	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	36868033	36868033	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	silent	c.1644	p.S548	0.034	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	38	0	0	47	9	16.07	-	-	-	A	36868033	G	A	36868033	2	1	976	1	0	0	0	0	0	0	0	1	8309	1219	43	4		4	KIAA1755	20	36868033	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	13321378	36868033	26157487	105	77261										
EMILIN3	0	genome.wustl.edu	37	chr20	39990702	39990702	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	cacagccagctctgtctgtaCaaggggccgagctgacctgc	12	14	2	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	39990702	39990702	C	G	SNP	EMILIN3	ENST00000332312	human	ensembl	69_37n	-1	known	missense	c.1507	p.V503L	0.488	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798	18	0	0	34	18	34.62	-	-	-	G	39990702	C	G	39990702	3	3	976	1	0	0	0	0	1	0	0	0	5132	478	17	4	797	4	EMILIN3	20	39990702	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	3122669	39990702	23034818	106	77262										
ARFGAP1	0	genome.wustl.edu	37	chr20	61907911	61907911	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctggtgggaatgctaagttcCgagagttcctggagtctcag	14	8	1	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	20	61907911	61907911	C	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	69_37n	1	known	nonsense	c.250	p.R84*	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199	67	0	0	80	32	28.57	-	-	-	T	61907911	C	T	61907911	4	4	976	1	0	0	0	0	0	1	0	0	851	644	23	1	260	1	ARFGAP1	20	61907911	Nonsense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	21917209	61907911	1117609	107	77263										
TIAM1	0	genome.wustl.edu	37	chr21	32624364	32624364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggtggagctgctgccgctgtCgctgcccacaaaggcccggc	15	15	0	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	21	32624364	32624364	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	missense	c.1105	p.D369N	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	70	0	0	84	11	11.58	-	-	-	T	32624364	C	T	32624364	3	4	976	1	0	0	0	0	1	0	0	0	15985	884	31	1	3766	1	TIAM1	21	32624364	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		32624364	15505531	108	77264										
NDUFV3	0	genome.wustl.edu	37	chr21	44324236	44324236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agggtggacaggcaatcgtgGaagatcagataccaccaagc	13	9	1	2			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	21	44324236	44324236	G	T	SNP	NDUFV3	ENST00000354250	human	ensembl	69_37n	1	known	nonsense	c.1114	p.E372*	0.044	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194	51	0	0	29	11	27.5	-	-	-	T	44324236	G	T	44324236	4	4	976	1	0	0	0	0	0	1	0	0	10373	1175	41	2	1124	2	NDUFV3	21	44324236	Nonsense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	11699872	44324236	3805659	109	77265										
ZNF74	0	genome.wustl.edu	37	chr22	20748932	20748932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ggaggccatggagatccctgCcccggagcccgagaagacag	15	13	0	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	22	20748932	20748932	C	T	SNP	ZNF74	ENST00000356671	human	ensembl	69_37n	1	known	missense	c.14	p.A5V	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252	16	0	0	7	9	56.25	-	-	-	T	20748932	C	T	20748932	3	4	976	1	0	0	0	0	1	0	0	0	18221	739	26	4	16	4	ZNF74	22	20748932	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09		20748932	30555634	110	77266										
ARHGAP6	0	genome.wustl.edu	37	chrX	11206927	11206927	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	tttctgaggttgagctgagaGatgagttactgcttgagagt	14	4	1	6			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	11206927	11206927	G	C	SNP	ARHGAP6	ENST00000337414	human	ensembl	69_37n	-1	known	missense	c.998	p.S333C	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648	57	0	0	37	34	47.89	-	-	-	C	11206927	G	C	11206927	3	2	976	1	0	0	0	0	1	0	0	0	889	942	33	2	2088	2	ARHGAP6	23	11206927	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09		11206927	144063633	111	77267										
ZNF645	0	genome.wustl.edu	37	chrX	22291680	22291680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	gcacaccatggtgtcactacCgtctgtgcaacatatgctac	8	13	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	22291680	22291680	C	T	SNP	ZNF645	ENST00000323684	human	ensembl	69_37n	1	known	missense	c.572	p.P191L	0.000	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809	37	0	0	22	14	38.89	-	-	-	T	22291680	C	T	22291680	3	4	976	1	0	0	0	0	1	0	0	0	18157	652	23	1	574	1	ZNF645	23	22291680	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	11084753	22291680	132978880	112	77268										
ACOT9	0	genome.wustl.edu	37	chrX	23723973	23723973	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctcgactccgaaaacttataGtcctgtacaaatgaatattt	5	9	0	1			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	23723973	23723973	G	C	SNP	ACOT9	ENST00000379303	human	ensembl	69_37n	-1	known	missense	c.845	p.T282S	1.000	NULL	pfam_Thioestr_supf	-	no_errors	ACOT9	HGNC	ENSG00000123130	69	0	0	66	28	29.79	-	-	-	C	23723973	G	C	23723973	3	2	976	1	0	0	0	0	1	0	0	0	157	1029	36	4	521	4	ACOT9	23	23723973	Missense_Mutation	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	1432293	23723973	131546587	113	77269										
MAGEB18	0	genome.wustl.edu	37	chrX	26157580	26157580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	ctgagcacatggagctggcaCttggtgttgatttgaaggaa	14	6	0	3			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	26157580	26157580	C	A	SNP	MAGEB18	ENST00000325250	human	ensembl	69_37n	1	known	missense	c.478	p.L160I	0.762	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774	31	0	0	13	9	40.91	-	-	-	A	26157580	C	A	26157580	3	1	976	1	0	0	0	0	1	0	0	0	9246	565	20	4	480	4	MAGEB18	23	26157580	Missense_Mutation	SNP	C	TCGA-PE-A5DC-01A-12D-A27P-09	2433607	26157580	129112980	114	77270										
NHSL2	0	genome.wustl.edu	37	chrX	71363117	71363117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	atctaggtccaaaaggaagcTgctcggctggaaggaacctg	13	9	1	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	71363117	71363117	T	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	1	known	missense	c.3371	p.L1124Q	1.000	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	46	0	0	45	6	11.76	-	-	-	A	71363117	T	A	71363117	3	1	976	1	0	0	0	0	1	0	0	0	10484	1580	55	5	3401	5	NHSL2	23	71363117	Missense_Mutation	SNP	T	TCGA-PE-A5DC-01A-12D-A27P-09	45205537	71363117	83907443	115	77271										
RPS4X	0	genome.wustl.edu	37	chrX	71493127	71493127	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.140350877192982	16	0.00940395871958585	2.23728813559322	2.75	1.95394736842105	0.743136452697801	1	9	agtcgagtggcaaagctgttGccattggcatctttcacgtg	12	9	2	0			TCGA-PE-A5DC-01A-12D-A27P-09	TCGA-PE-A5DC-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7b62179b-7b95-441a-8fe2-6e1f604ee077	d9f3df49-ebb8-4208-985d-aa9fee51715f	X	71493127	71493127	G	T	SNP	RPS4X	ENST00000316084	human	ensembl	69_37n	-1	known	silent	c.645	p.G215	1.000	pirsf_Ribosomal_S4e	pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034	45	0	0	41	23	35.94	-	-	-	T	71493127	G	T	71493127	2	4	976	1	0	0	0	0	0	0	0	1	13731	1306	46	4		4	RPS4X	23	71493127	Silent	SNP	G	TCGA-PE-A5DC-01A-12D-A27P-09	130010	71493127	83777433	116	77272										
PRDM2	0	genome.wustl.edu	37	chr1	14105230	14105230	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	agccagaaatacggtgtgatGagaagccagaagatttatta	11	5	0	5			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	14105230	14105230	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	69_37n	1	known	missense	c.940	p.E314K	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	17	0	0	25	6	19.35	-	-	-	A	14105230	G	A	14105230	3	1	977	1	0	0	0	0	1	0	0	0	12539	1291	45	2	966	2	PRDM2	1	14105230	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09		14105230	235145391	1	77273										
CATSPER4	0	genome.wustl.edu	37	chr1	26528990	26528990	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tggtttgcaggttcatgactCtagctcacaaatactcctta	7	10	3	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	26528990	26528990	C	G	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	1	known	missense	c.1376	p.S459C	0.251	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	66	0	0	29	39	57.35	-	-	-	G	26528990	C	G	26528990	3	3	977	1	0	0	0	0	1	0	0	0	2715	913	32	2	1414	2	CATSPER4	1	26528990	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	12423760	26528990	222721631	2	77274										
LEPRE1	0	genome.wustl.edu	37	chr1	43218275	43218275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cgtccatcaccacccgctggGaaccattcaggagtttggag	11	13	2	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	43218275	43218275	G	A	SNP	LEPRE1	ENST00000236040	human	ensembl	69_37n	-1	known	missense	c.1406	p.S469F	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385	48	0	0	27	18	40	-	-	-	A	43218275	G	A	43218275	3	1	977	1	0	0	0	0	1	0	0	0	8783	1174	41	2	851	2	LEPRE1	1	43218275	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	16689285	43218275	206032346	3	77275										
BTBD19	0	genome.wustl.edu	37	chr1	45279094	45279094	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tggcggccccggtggtgaaaGagctgagactagccttgctg	16	10	0	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	45279094	45279094	G	A	SNP	BTBD19	ENST00000450269	human	ensembl	69_37n	1	known	missense	c.664	p.E222K	0.994	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD19	HGNC	ENSG00000222009	14	0	0	13	7	35	-	-	-	A	45279094	G	A	45279094	3	1	977	1	0	0	0	0	1	0	0	0	1551	943	33	2	690	2	BTBD19	1	45279094	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	2060819	45279094	203971527	4	77276										
RABGGTB	0	genome.wustl.edu	37	chr1	76253360	76253360	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gtcataagcagtgagacagtAtttatgtcttaaaatggcat	9	5	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	76253360	76253360	A	T	SNP	RABGGTB	ENST00000496055	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	19	0	0	3	10	76.92	-	-	-	T	76253360	A	T	76253360	1	4	977	0	1	0	0	0	0	0	0	0	13051	464	16	5		5	RABGGTB	1	76253360	RNA	SNP	A	TCGA-PE-A5DD-01A-12D-A27P-09	30974266	76253360	172997261	5	77277										
PALMD	0	genome.wustl.edu	37	chr1	100151978	100151978	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	atgaagaacatggagcaaagGtcaaatgctttacctaatat	8	6	1	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	100151978	100151978	G	T	SNP	PALMD	ENST00000496843	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PALMD	HGNC	ENSG00000099260	8	0	0	1	8	88.89	-	-	-	T	100151978	G	T	100151978	1	4	977	0	1	0	0	0	0	0	0	0	11484	1276	44	4		4	PALMD	1	100151978	RNA	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	23898618	100151978	149098643	6	77278										
FDPS	0	genome.wustl.edu	37	chr1	155279519	155279519	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ggggagctgccaccatgcctCtgcctttggtgcttgcccct	12	15	1	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	155279519	155279519	C	T	SNP	FDPS	ENST00000487002	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752	23	0	0	10	10	50	-	-	-	T	155279519	C	T	155279519	1	4	977	0	1	0	0	0	0	0	0	0	5849	928	32	2		2	FDPS	1	155279519	RNA	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	55127541	155279519	93971102	7	77279										
FDPS	0	genome.wustl.edu	37	chr1	155290290	155290290	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cagcagtgttcttgcaatatGaggaagacagttacagccac	10	9	1	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	155290290	155290290	G	A	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	missense	c.1150	p.E384K	1.000	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	54	0	0	66	36	35.29	-	-	-	A	155290290	G	A	155290290	3	1	977	1	0	0	0	0	1	0	0	0	5849	1291	45	2	1188	2	FDPS	1	155290290	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	10771	155290290	93960331	8	77280										
C1orf192	0	genome.wustl.edu	37	chr1	161336022	161336023	+	In_Frame_Ins	INS	-	-	GAT													0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	agaaggcagtagatgaccacINSgatcgttggcaataatttga							TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	161336022	161336023	-	GAT	INS	C1orf192	ENST00000367974	human	ensembl	69_37n	-1	known	in_frame_ins	c.137_136	p.46in_frame_insH	1.000:0.997	NULL	NULL	-	no_errors	C1orf192	HGNC	ENSG00000188931	67	0	0	35	21	37.5	-	-	-	GAT	161336023	-	GAT	161336022	7	5	977	1	0	1	1	0	0	0	0	0	2043	536	19	0	408	0	C1orf192	1	161336022	In_Frame_Ins	INS	-	TCGA-PE-A5DD-01A-12D-A27P-09	6045732	161336022	87914599	9	77281										
TNR	0	genome.wustl.edu	37	chr1	175332859	175332861	+	In_Frame_Del	DEL	ATG	ATG	-													0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gttaccttgggtgggtcgatAtgatactcggtagtaatcga							TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	175332859	175332861	ATG	-	DEL	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	in_frame_del	c.2692_2690	p.S897in_frame_del	0.997:0.206:0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	61	0	0	65	17	20.73	-	-	-	-	175332861	ATG	-	175332859	7	5	977	1	0	1	0	1	0	0	0	0	16433	449	16	0	1428	0	TNR	1	175332859	In_Frame_Del	DEL	ATG	TCGA-PE-A5DD-01A-12D-A27P-09	13996837	175332859	73917762	10	77282										
CSRP1	0	genome.wustl.edu	37	chr1	201455910	201455910	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tagaaaggtggggcttctccCtaccttttccacttgaatgc	9	11	1	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	1	201455910	201455910	C	T	SNP	CSRP1	ENST00000458271	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSRP1	HGNC	ENSG00000159176	8	0	0	10	6	37.5	-	-	-	T	201455910	C	T	201455910	1	4	977	0	1	0	0	0	0	0	0	0	3998	696	24	4		4	CSRP1	1	201455910	RNA	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	26123051	201455910	47794711	11	77283										
BIRC6	0	genome.wustl.edu	37	chr2	32718729	32718729	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ctaattcatatactttcaacTgaaaggtaaatttttgtgta	5	5	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	2	32718729	32718729	T	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	1	known	silent	c.8463	p.T2821	0.996	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	96	0	0	92	35	27.56	-	-	-	A	32718729	T	A	32718729	2	1	977	1	0	0	0	0	0	0	0	1	1443	1567	55	5		5	BIRC6	2	32718729	Silent	SNP	T	TCGA-PE-A5DD-01A-12D-A27P-09		32718729	210480644	12	77284										
XIRP2	0	genome.wustl.edu	37	chr2	168099266	168099266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gacagaagaatttcctcctcCcccacctgacgtacttcaaa	5	15	1	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	2	168099266	168099266	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	1	known	missense	c.1364	p.P455L	1.000	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	45	0	0	30	17	36.17	-	-	-	T	168099266	C	T	168099266	3	4	977	1	0	0	0	0	1	0	0	0	17527	623	22	4	1394	4	XIRP2	2	168099266	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	135380537	168099266	75100107	13	77285										
ERC2	0	genome.wustl.edu	37	chr3	56468948	56468948	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tcccccactacttgttcttcGgtggcccaaacgaggagacc	9	15	1	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	56468948	56468948	G	A	SNP	ERC2	ENST00000288221	human	ensembl	69_37n	-1	known	nonsense	c.88	p.R30*	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	95	0	0	56	32	36.36	-	-	-	A	56468948	G	A	56468948	4	1	977	1	0	0	0	0	0	1	0	0	5248	1124	39	1	2839	1	ERC2	3	56468948	Nonsense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09		56468948	141553482	14	77286										
KIAA2018	0	genome.wustl.edu	37	chr3	113378576	113378577	+	Frame_Shift_Del	DEL	AG	AG	-													0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tttgacatggtaacagaaaaAgtttgtgttgagttagacgc							TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	113378576	113378577	AG	-	DEL	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	frame_shift_del	c.1953_1952	p.T651fs	0.883:0.898	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	36	0	0	55	17	23.29	-	-	-	-	113378577	AG	-	113378576	7	5	977	1	0	1	0	1	0	0	0	0	8320	59	3	0	4788	0	KIAA2018	3	113378576	Frame_Shift_Del	DEL	AG	TCGA-PE-A5DD-01A-12D-A27P-09	56909628	113378576	84643854	15	77287										
PIK3CA	0	genome.wustl.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	25	0	0	10	12	54.55	-	-	-	G	178952085	A	G	178952085	3	3	977	1	0	0	0	0	1	0	0	0	11987	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-PE-A5DD-01A-12D-A27P-09	65573509	178952085	19070345	16	77288										
TBCCD1	0	genome.wustl.edu	37	chr3	186281917	186281917	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aagccacgccaggtccttggCcaactgcagcttcccacaag	9	16	0	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	186281917	186281917	C	A	SNP	TBCCD1	ENST00000338733	human	ensembl	69_37n	-1	known	missense	c.202	p.A68S	0.889	NULL	pfam_Tubulin-bd_cofactor_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	TBCCD1	HGNC	ENSG00000113838	46	0	0	45	41	47.67	-	-	-	A	186281917	C	A	186281917	3	1	977	1	0	0	0	0	1	0	0	0	15727	739	26	4	1495	4	TBCCD1	3	186281917	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	7329832	186281917	11740513	17	77289										
MUC4	0	genome.wustl.edu	37	chr3	195477775	195477775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ctcacgggctgtcacatcgcGcacgtcttccccggagatgg	12	15	3	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	3	195477775	195477775	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.15856	p.R5286S	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	54	0	0	56	24	30	-	-	-	T	195477775	G	T	195477775	3	4	977	1	0	0	0	0	1	0	0	0	10050	1087	38	3	394	3	MUC4	3	195477775	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	9195858	195477775	2544655	18	77290										
ANXA5	0	genome.wustl.edu	37	chr4	122607522	122607522	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aagtcagtcacagtgcctctGagaacctaattcacgaaaca	7	11	4	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	4	122607522	122607522	G	A	SNP	ANXA5	ENST00000296511	human	ensembl	69_37n	-1	known	silent	c.15	p.L5	0.199	superfamily_Annexin	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinV,prints_AnnexinIV	-	no_errors	ANXA5	HGNC	ENSG00000164111	34	0	0	15	11	42.31	-	-	-	A	122607522	G	A	122607522	2	1	977	1	0	0	0	0	0	0	0	1	720	1277	45	2		2	ANXA5	4	122607522	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09		122607522	68546754	19	77291										
NUP155	0	genome.wustl.edu	37	chr5	37371053	37371053	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gcagatgtagaggccggcatCgccgcgcccaacaaagaaga	13	12	0	4			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	5	37371053	37371053	C	T	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	silent	c.27	p.A9	0.001	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	16	0	0	15	6	28.57	-	-	-	T	37371053	C	T	37371053	2	4	977	1	0	0	0	0	0	0	0	1	10829	871	31	1		1	NUP155	5	37371053	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		37371053	143544207	20	77292										
C5orf45	0	genome.wustl.edu	37	chr5	179280201	179280201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aatcaaatggcagtacctttCcagattctgctccatccatt	5	12	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	5	179280201	179280201	C	T	SNP	C5orf45	ENST00000403396	human	ensembl	69_37n	-1	known	missense	c.248	p.G83E	0.004	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	50	0	0	44	15	25.42	-	-	-	T	179280201	C	T	179280201	3	4	977	1	0	0	0	0	1	0	0	0	2325	870	30	2		2	C5orf45	5	179280201	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	141909148	179280201	1635059	21	77293										
FILIP1	0	genome.wustl.edu	37	chr6	76124553	76124553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tgaggccatgacatcatcctCcttcctatttgatttcttct	5	12	3	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	6	76124553	76124553	C	T	SNP	FILIP1	ENST00000237172	human	ensembl	69_37n	-1	known	missense	c.136	p.E46K	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	63	0	0	51	29	36.25	-	-	-	T	76124553	C	T	76124553	3	4	977	1	0	0	0	0	1	0	0	0	5940	864	30	2	3525	2	FILIP1	6	76124553	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		76124553	94990514	22	77294										
WNT16	0	genome.wustl.edu	37	chr7	120969357	120969357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tgcgggggcgatggacagggCggcgctcctgggactggccc	20	12	0	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	7	120969357	120969357	C	T	SNP	WNT16	ENST00000222462	human	ensembl	69_37n	1	known	missense	c.11	p.A4V	0.999	prints_Wnt16	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	124	1	0.8	82	54	39.13	-	-	-	T	120969357	C	T	120969357	3	4	977	1	0	0	0	0	1	0	0	0	17482	768	27	1	82	1	WNT16	7	120969357	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		120969357	38169306	23	77295										
DENND2A	0	genome.wustl.edu	37	chr7	140246714	140246714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ccagggcaggagagatgcctCgtcttttttccacctcatcc	9	14	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	7	140246714	140246714	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	69_37n	-1	known	missense	c.2063	p.R688Q	0.998	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	67	0	0	56	26	31.71	-	-	-	T	140246714	C	T	140246714	3	4	977	1	0	0	0	0	1	0	0	0	4465	884	31	1	998	1	DENND2A	7	140246714	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	19277357	140246714	18891949	24	77296										
SGK223	0	genome.wustl.edu	37	chr8	8234883	8234883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	actggcgccgctgccgctgcCgctgccacaagagaggccgt	14	16	0	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	8	8234883	8234883	C	T	SNP	SGK223	ENST00000330777	human	ensembl	69_37n	-1	known	missense	c.1036	p.G346S	0.010	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRAGMIN	Clone_based_vega_gene	ENSG00000182319	124	1	0.8	120	14	10.45	-	-	-	T	8234883	C	T	8234883	3	4	977	1	0	0	0	0	1	0	0	0	14298	652	23	1	3188	1	SGK223	8	8234883	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		8234883	138129139	25	77297										
CHRNA6	0	genome.wustl.edu	37	chr8	42623707	42623707	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gtgtgtgtcttctcagaaatCaaaacatccccgggacttca	8	11	4	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	8	42623707	42623707	C	A	SNP	CHRNA6	ENST00000530869	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	CHRNA6	HGNC	ENSG00000147434	18	0	0	7	8	53.33	-	-	-	A	42623707	C	A	42623707	1	1	977	0	1	0	0	0	0	0	0	0	3416	841	29	2		2	CHRNA6	8	42623707	RNA	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	34388824	42623707	103740315	26	77298										
RBP3	0	genome.wustl.edu	37	chr10	48383987	48383987	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tggggccaccgatgttgaacCtgaaggatgggaagcagagc	16	8	0	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	10	48383987	48383987	C	T	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	splice_site	c.3246-1	e3-1	1.000	-	-	-	no_errors	RBP3	HGNC	ENSG00000107618	85	0	0	62	35	36.08	-	-	-	T	48383987	C	T	48383987	5	4	977	1	0	0	0	0	0	0	1	0	13240	695	24	4	506	4	RBP3	10	48383987	Splice_Site	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		48383987	87150760	27	77299										
MUC2	0	genome.wustl.edu	37	chr11	1093104	1093104	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	accactacggtgaccccaacCccaacacccaccggcacaca	5	21	0	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	1093104	1093104	C	A	SNP	MUC2	ENST00000441003	human	ensembl	69_37n	1	known	silent	c.4923	p.T1641	0.095	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	313	2	0.63	345	40	10.36	-	-	-	A	1093104	C	A	1093104	2	1	977	1	0	0	0	0	0	0	0	1	10047	610	22	4		4	MUC2	11	1093104	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		1093104	133913412	28	77300										
OR52B4	0	genome.wustl.edu	37	chr11	4389026	4389026	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tattctggcagaaagtcaatCtttttaaaagaaatatgata	6	4	3	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	4389026	4389026	C	G	SNP	OR52B4	ENST00000408920	human	ensembl	69_37n	-1	known	missense	c.500	p.R167T	0.028	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996	19	0	0	13	8	38.1	-	-	-	G	4389026	C	G	4389026	3	3	977	1	0	0	0	0	1	0	0	0	11185	913	32	2	448	2	OR52B4	11	4389026	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	3295922	4389026	130617490	29	77301										
AMPD3	0	genome.wustl.edu	37	chr11	10521756	10521756	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cctacagctactacctgtacTacatgtatgccaacatcatg	5	13	1	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	10521756	10521756	T	C	SNP	AMPD3	ENST00000396553	human	ensembl	69_37n	1	known	missense	c.1681	p.Y561H	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805	52	0	0	46	32	41.03	-	-	-	C	10521756	T	C	10521756	3	2	977	1	0	0	0	0	1	0	0	0	587	1522	53	5	1770	5	AMPD3	11	10521756	Missense_Mutation	SNP	T	TCGA-PE-A5DD-01A-12D-A27P-09	6132730	10521756	124484760	30	77302										
OR8I2	0	genome.wustl.edu	37	chr11	55861250	55861250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tgtgataggcttcacaagctCgctgatatctgtctgggtga	12	8	3	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	55861250	55861250	C	T	SNP	OR8I2	ENST00000302124	human	ensembl	69_37n	1	known	missense	c.467	p.S156L	0.755	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154	51	0	0	37	19	33.93	-	-	-	T	55861250	C	T	55861250	3	4	977	1	0	0	0	0	1	0	0	0	11313	893	31	1	469	1	OR8I2	11	55861250	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	45339494	55861250	79145266	31	77303										
ARHGAP32	0	genome.wustl.edu	37	chr11	128842567	128842567	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gctgttgctggagtagttgtCatgtaagtcatggtggctgt	15	5	2	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	11	128842567	128842567	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	69_37n	-1	known	missense	c.3792	p.M1264I	0.546	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909	34	0	0	31	13	29.55	-	-	-	T	128842567	C	T	128842567	3	4	977	1	0	0	0	0	1	0	0	0	883	826	29	2	2479	2	ARHGAP32	11	128842567	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	72981317	128842567	6163949	32	77304										
BAZ2A	0	genome.wustl.edu	37	chr12	56995558	56995558	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ggtgtgaggactgagctgctCaacagggagctatggctctg	16	8	2	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	56995558	56995558	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	silent	c.3849	p.L1283	0.989	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	37	0	0	30	23	43.4	-	-	-	T	56995558	C	T	56995558	2	4	977	1	0	0	0	0	0	0	0	1	1335	825	29	2		2	BAZ2A	12	56995558	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		56995558	76856337	33	77305			1	128		2	2	31	C		5.620588e-05
BAZ2A	0	genome.wustl.edu	37	chr12	56995588	56995588	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ctatggctctgagtctggctCagccaagacaggaaggctga	13	10	3	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	56995588	56995588	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	silent	c.3819	p.L1273	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	41	0	0	37	20	35.09	-	-	-	T	56995588	C	T	56995588	2	4	977	1	0	0	0	0	0	0	0	1	1335	813	29	2		2	BAZ2A	12	56995588	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	30	56995588	76856307	34	77306			1	128		2	2	31	C		5.620588e-05
CCDC92	0	genome.wustl.edu	37	chr12	124427988	124427988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aacaggaggttcttctgtgcGctgtgcagctggttctccag	13	10	3	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	12	124427988	124427988	G	T	SNP	CCDC92	ENST00000238156	human	ensembl	69_37n	-1	known	missense	c.87	p.S29R	0.582	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242	76	0	0	39	19	32.76	-	-	-	T	124427988	G	T	124427988	3	4	977	1	0	0	0	0	1	0	0	0	2898	1078	38	3	920	3	CCDC92	12	124427988	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	67432400	124427988	9423907	35	77307										
CTAGE5	0	genome.wustl.edu	37	chr14	39760281	39760281	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cagctttgagaaggaggcaaCagaagcacaaagtttggagg	14	6	0	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	14	39760281	39760281	C	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	1	known	missense	c.365	p.T122K	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	57	0	0	46	20	30.3	-	-	-	A	39760281	C	A	39760281	3	1	977	1	0	0	0	0	1	0	0	0	4026	478	17	4	414	4	CTAGE5	14	39760281	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		39760281	67589259	36	77308										
SMEK1	0	genome.wustl.edu	37	chr14	91975859	91975859	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gcttcacttaccgtcgctctCagccctgacaagcagggaca	9	15	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	14	91975859	91975859	C	T	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	20	0	0	21	19	47.5	-	-	-	T	91975859	C	T	91975859	3	4	977	1	0	0	0	0	1	0	0	0	14882	835	29	2	2389	2	SMEK1	14	91975859	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	52215578	91975859	15373681	37	77309										
LCMT2	0	genome.wustl.edu	37	chr15	43622012	43622012	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cagcatgaactggccaaaggCgtcttgaggcctcatctgct	11	12	3	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	43622012	43622012	C	A	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.676	p.A226S	0.997	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	104	0	0	37	36	49.32	-	-	-	A	43622012	C	A	43622012	3	1	977	1	0	0	0	0	1	0	0	0	8733	768	27	3	1388	3	LCMT2	15	43622012	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		43622012	58909380	38	77310										
DUOX2	0	genome.wustl.edu	37	chr15	45398769	45398769	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tccttcttcacgctctctttGagtttcttttgtagcttctt	5	11	5	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	45398769	45398769	G	C	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.1902	p.L634	0.973	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	67	0	0	18	26	59.09	-	-	-	C	45398769	G	C	45398769	2	2	977	1	0	0	0	0	0	0	0	1	4836	1277	45	2		2	DUOX2	15	45398769	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	1776757	45398769	57132623	39	77311										
AKAP13	0	genome.wustl.edu	37	chr15	86266397	86266397	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aaagtggcaagttatgaaaaGaaagtgcgtctcaatgagat	11	4	1	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	15	86266397	86266397	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	silent	c.6603	p.K2201	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	31	0	0	11	10	47.62	-	-	-	A	86266397	G	A	86266397	2	1	977	1	0	0	0	0	0	0	0	1	449	933	33	2		2	AKAP13	15	86266397	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	40867628	86266397	16264995	40	77312										
CDH1	0	genome.wustl.edu	37	chr16	68845757	68845757	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tggtcaccactgggctggacCgagaggtcaggggtcaggag	18	9	3	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	16	68845757	68845757	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	nonsense	c.1003	p.R335*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	45	0	0	22	19	46.34	-	-	-	T	68845757	C	T	68845757	4	4	977	1	0	0	0	0	0	1	0	0	3124	644	23	1	1029	1	CDH1	16	68845757	Nonsense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		68845757	21508996	41	77313										
KIAA0513	0	genome.wustl.edu	37	chr16	85100730	85100730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aatcgactttgggcctgaggCacccacctcttctcccctgg	9	16	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	16	85100730	85100730	C	T	SNP	KIAA0513	ENST00000258180	human	ensembl	69_37n	1	known	missense	c.53	p.A18V	0.002	NULL	pfam_SBF2	-	no_errors	KIAA0513	HGNC	ENSG00000135709	48	0	0	34	13	27.08	-	-	-	T	85100730	C	T	85100730	3	4	977	1	0	0	0	0	1	0	0	0	8233	710	25	4	55	4	KIAA0513	16	85100730	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	16254973	85100730	5254023	42	77314										
SEPT4	0	genome.wustl.edu	37	chr17	56598421	56598421	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	atgcactgtgcccggtagttCtcataatgtgtctcccgtgt	10	11	2	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	17	56598421	56598421	C	G	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	missense	c.1260	p.E420D	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	27	0	0	18	13	41.94	-	-	-	G	56598421	C	G	56598421	3	3	977	1	0	0	0	0	1	0	0	0	14154	912	32	2	233	2	SEPT4	17	56598421	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		56598421	24596789	43	77315			2	129		2	2	22	C		3.934445e-05
SEPT4	0	genome.wustl.edu	37	chr17	56598442	56598442	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tcataatgtgtctcccgtgtCacatccttcaggtcctgcat	7	13	4	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	17	56598442	56598442	C	G	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	silent	c.1239	p.V413	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	26	0	0	14	12	46.15	-	-	-	G	56598442	C	G	56598442	2	3	977	1	0	0	0	0	0	0	0	1	14154	813	29	2		2	SEPT4	17	56598442	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	21	56598442	24596768	44	77316			2	129		2	2	22	C		3.934445e-05
ZNF507	0	genome.wustl.edu	37	chr19	32845390	32845390	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cgccacttaaaaactcttcaGatggattaactagtcttaac	5	10	3	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	32845390	32845390	G	A	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	1	known	missense	c.1654	p.D552N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813	26	0	0	15	13	46.43	-	-	-	A	32845390	G	A	32845390	3	1	977	1	0	0	0	0	1	0	0	0	18049	942	33	2	1656	2	ZNF507	19	32845390	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09		32845390	26283593	45	77317										
HPN	0	genome.wustl.edu	37	chr19	35551280	35551280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gcaggaagctgcccgtggacCgcatcgtgggaggccgggac	18	12	0	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	35551280	35551280	C	T	SNP	HPN	ENST00000262626	human	ensembl	69_37n	1	known	missense	c.484	p.R162C	1.000	superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Hepsin-SRCR,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707	64	0	0	55	8	12.7	-	-	-	T	35551280	C	T	35551280	3	4	977	1	0	0	0	0	1	0	0	0	7387	652	23	1	510	1	HPN	19	35551280	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	2705890	35551280	23577703	46	77318										
MEIS3	0	genome.wustl.edu	37	chr19	47910643	47910643	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	caggatggtgagccccgtgtCctgcgccagctgtttcttct	12	13	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	47910643	47910643	C	G	SNP	MEIS3	ENST00000559524	human	ensembl	69_37n	-1	known	missense	c.1039	p.D347H	1.000	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS3	HGNC	ENSG00000105419	106	1	0.93	84	42	33.33	-	-	-	G	47910643	C	G	47910643	3	3	977	1	0	0	0	0	1	0	0	0	9540	855	30	2	242	2	MEIS3	19	47910643	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	12359363	47910643	11218340	47	77319										
SHANK1	0	genome.wustl.edu	37	chr19	51201173	51201173	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	aaccagccaacacgacctttGacctggccttcccagaagcc	7	17	0	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	19	51201173	51201173	G	C	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	silent	c.1788	p.V596	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	80	0	0	77	40	34.19	-	-	-	C	51201173	G	C	51201173	2	2	977	1	0	0	0	0	0	0	0	1	14353	1277	45	2		2	SHANK1	19	51201173	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	3290530	51201173	7927810	48	77320										
SIGLEC1	0	genome.wustl.edu	37	chr20	3673774	3673774	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	gtcaggcgcaggttgcggggCgcgtctgcagggcatgagag	20	9	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	3673774	3673774	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.3513	p.A1171	0.217	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	84	0	0	61	27	30.68	-	-	-	T	3673774	C	T	3673774	2	4	977	1	0	0	0	0	0	0	0	1	14394	755	27	1		1	SIGLEC1	20	3673774	Silent	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		3673774	59351746	49	77321										
PCSK2	0	genome.wustl.edu	37	chr20	17207983	17207983	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tgtgtctcccagtggaaggcGgccgccgggttcctcttctg	14	13	3	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	17207983	17207983	G	A	SNP	PCSK2	ENST00000262545	human	ensembl	69_37n	1	known	silent	c.33	p.A11	1.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	40	0	0	29	36	55.38	-	-	-	A	17207983	G	A	17207983	2	1	977	1	0	0	0	0	0	0	0	1	11674	1103	39	1		1	PCSK2	20	17207983	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	13534209	17207983	45817537	50	77322										
ZNF334	0	genome.wustl.edu	37	chr20	45130540	45130540	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ctctcctgtgtgtgttctctGatgtatagtgagtgttgact	11	7	2	3			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	45130540	45130540	G	T	SNP	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	missense	c.1438	p.Q480K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	52	0	0	53	28	34.57	-	-	-	T	45130540	G	T	45130540	3	4	977	1	0	0	0	0	1	0	0	0	17947	1299	45	2	608	2	ZNF334	20	45130540	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	27922557	45130540	17894980	51	77323										
PHACTR3	0	genome.wustl.edu	37	chr20	58349311	58349311	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ggtttagttttcaaggaagaGaaagtaaagggtctccaaag	12	4	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	20	58349311	58349311	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	1	known	missense	c.940	p.E314K	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	28	0	0	18	12	40	-	-	-	A	58349311	G	A	58349311	3	1	977	1	0	0	0	0	1	0	0	0	11885	943	33	2	966	2	PHACTR3	20	58349311	Missense_Mutation	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	13218771	58349311	4676209	52	77324										
TPTE	0	genome.wustl.edu	37	chr21	10907021	10907021	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tttatgtagattatccaattCattttttggtagataaagcc	6	5	1	2			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	21	10907021	10907021	C	T	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.1540	p.E514K	0.904	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	131	0	0	89	17	16.04	-	-	-	T	10907021	C	T	10907021	3	4	977	1	0	0	0	0	1	0	0	0	16526	835	29	2	119	2	TPTE	21	10907021	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09		10907021	37222874	53	77325										
FRMPD4	0	genome.wustl.edu	37	chrX	12516808	12516808	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ttcttttccagccacaggacGaagtcttcaggctggccgcc	10	14	3	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	12516808	12516808	G	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	1	known	silent	c.51	p.T17	0.678	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	24	0	0	25	10	28.57	-	-	-	A	12516808	G	A	12516808	2	1	977	1	0	0	0	0	0	0	0	1	6108	1045	37	1		1	FRMPD4	23	12516808	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09		12516808	142753752	54	77326										
FAM47B	0	genome.wustl.edu	37	chrX	34961515	34961515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ccctgtggggaatcctgcccGcggcctcccgagactccggt	13	17	0	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	34961515	34961515	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	1	known	silent	c.567	p.P189	0.045	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	96	0	0	84	16	16	-	-	-	A	34961515	G	A	34961515	2	1	977	1	0	0	0	0	0	0	0	1	5616	1074	38	1		1	FAM47B	23	34961515	Silent	SNP	G	TCGA-PE-A5DD-01A-12D-A27P-09	22444707	34961515	120309045	55	77327										
FOXO4	0	genome.wustl.edu	37	chrX	70321266	70321266	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	ttctgtcccaggctccgactCttctgttgctgggggggctt	13	12	3	0			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	70321266	70321266	C	G	SNP	FOXO4	ENST00000374259	human	ensembl	69_37n	1	known	missense	c.1186	p.L396V	0.967	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	19	0	0	19	13	40.62	-	-	-	G	70321266	C	G	70321266	3	3	977	1	0	0	0	0	1	0	0	0	6073	913	32	2	1192	2	FOXO4	23	70321266	Missense_Mutation	SNP	C	TCGA-PE-A5DD-01A-12D-A27P-09	35359751	70321266	84949294	56	77328										
ZMYM3	0	genome.wustl.edu	37	chrX	70462162	70462162	+	Frame_Shift_Del	DEL	A	A	-													0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	tcctcagctgtctgcagcccAaaaaacttagtgttgaagaa							TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	70462162	70462162	A	-	DEL	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_del	c.3666	p.F1222fs	0.992	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	87	0	0	62	28	31.11	-	-	-	-	70462162	A	-	70462162	7	5	977	1	0	1	0	1	0	0	0	0	17797	127	5	0	464	0	ZMYM3	23	70462162	Frame_Shift_Del	DEL	A	TCGA-PE-A5DD-01A-12D-A27P-09	140896	70462162	84808398	57	77329										
NKRF	0	genome.wustl.edu	37	chrX	118724234	118724234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.344827586206897	20	3.59594582839823e-06	3.3625730994152	5.88450292397661	2.73209064327485	0.129207985627894	0.62934362934363	14	cataaccttcagctaagcagTgatcttgtaaaaacactcga	6	10	2	1			TCGA-PE-A5DD-01A-12D-A27P-09	TCGA-PE-A5DD-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	240ff9b5-d5c6-4d0f-b2a3-dbbdf7e3aff0	5069f07e-fae4-47fc-8512-0ca8b9f19494	X	118724234	118724234	T	C	SNP	NKRF	ENST00000542113	human	ensembl	69_37n	-1	known	missense	c.1199	p.H400R	1.000	smart_Ds-RNA-bd	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_Ds-RNA-bd,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416	74	0	0	73	13	15.12	-	-	-	C	118724234	T	C	118724234	3	2	977	1	0	0	0	0	1	0	0	0	10519	1696	59	5	922	5	NKRF	23	118724234	Missense_Mutation	SNP	T	TCGA-PE-A5DD-01A-12D-A27P-09	48262072	118724234	36546326	58	77330										
PLCH2	0	genome.wustl.edu	37	chr1	2435866	2435866	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atgtcatccagcgacactgtCattgacctctccctgcccag	7	16	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	2435866	2435866	C	G	SNP	PLCH2	ENST00000419816	human	ensembl	69_37n	1	known	nonsense	c.1349	p.S450*	1.000	NULL	pfam_C2_Ca-dep,pfam_PLipase_C_Pinositol-sp_Y,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_Pinositol-sp_Y	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCH2	HGNC	ENSG00000149527	120	0	0	134	22	14.1	-	-	-	G	2435866	C	G	2435866	4	3	978	1	0	0	0	0	0	1	0	0	12112	813	29	2	3551	2	PLCH2	1	2435866	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		2435866	246814755	1	77331										
ESPN	0	genome.wustl.edu	37	chr1	6505739	6505739	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cccagggctttccagcgctaGagctgcagacatacagagct	11	13	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	6505739	6505739	G	C	SNP	ESPN	ENST00000377828	human	ensembl	69_37n	1	known	missense	c.1208	p.R403T	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017	57	0	0	73	14	16.09	-	-	-	C	6505739	G	C	6505739	3	2	978	1	0	0	0	0	1	0	0	0	5291	942	33	2	1234	2	ESPN	1	6505739	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4069873	6505739	242744882	2	77332										
RERE	0	genome.wustl.edu	37	chr1	8424175	8424175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	actgagcccatcatcctcttCcttgacgggtttgaacataa	7	12	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	8424175	8424175	C	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	missense	c.1681	p.E561K	1.000	NULL	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	79	0	0	75	13	14.77	-	-	-	T	8424175	C	T	8424175	3	4	978	1	0	0	0	0	1	0	0	0	13314	864	30	2	3055	2	RERE	1	8424175	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1918436	8424175	240826446	3	77333										
VPS13D	0	genome.wustl.edu	37	chr1	12428617	12428617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtgacacagatcagttacctCctcctttccgaattgacaac	6	13	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	12428617	12428617	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	1	known	missense	c.10543	p.P3515S	0.996	pfam_VPSAP	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	90	0	0	82	10	10.87	-	-	-	T	12428617	C	T	12428617	3	4	978	1	0	0	0	0	1	0	0	0	17289	855	30	2	10749	2	VPS13D	1	12428617	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4004442	12428617	236822004	4	77334										
CELA2B	0	genome.wustl.edu	37	chr1	15807649	15807649	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cacacctgcggagggtccctGatagccaacagctgggtcct	12	14	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	15807649	15807649	G	A	SNP	CELA2B	ENST00000375910	human	ensembl	69_37n	1	known	silent	c.186	p.L62	0.991	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704	81	0	0	83	12	12.63	-	-	-	A	15807649	G	A	15807649	2	1	978	1	0	0	0	0	0	0	0	1	3241	1277	45	2		2	CELA2B	1	15807649	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3379032	15807649	233442972	5	77335										
UBR4	0	genome.wustl.edu	37	chr1	19525367	19525367	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	taaatgtgataatttcagttCtatctagtcggctacagcca	7	8	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	19525367	19525367	C	T	SNP	UBR4	ENST00000375267	human	ensembl	69_37n	-1	known	missense	c.434	p.R145K	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	44	0	0	53	7	11.67	-	-	-	T	19525367	C	T	19525367	3	4	978	1	0	0	0	0	1	0	0	0	17001	913	32	2	15529	2	UBR4	1	19525367	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3717718	19525367	229725254	6	77336										
NIPAL3	0	genome.wustl.edu	37	chr1	24792493	24792493	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcttgccttttgtctacctaGattcatatcttcacaacaga	4	11	5	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	24792493	24792493	G	C	SNP	NIPAL3	ENST00000339255	human	ensembl	69_37n	1	known	splice_site	c.1022-1	e11-1	0.002	-	-	-	no_errors	NIPAL3	HGNC	ENSG00000001461	34	0	0	47	8	14.55	-	-	-	C	24792493	G	C	24792493	5	2	978	1	0	0	0	0	0	0	1	0	10498	957	33	2		2	NIPAL3	1	24792493	Splice_Site	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5267126	24792493	224458128	7	77337										
BAI2	0	genome.wustl.edu	37	chr1	32203099	32203099	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagatggacaggcagaagttCagcaagatgatggagcgttc	14	6	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	32203099	32203099	C	T	SNP	BAI2	ENST00000373658	human	ensembl	69_37n	-1	known	silent	c.2910	p.L970	0.996	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	38	0	0	63	9	12.5	-	-	-	T	32203099	C	T	32203099	2	4	978	1	0	0	0	0	0	0	0	1	1303	813	29	2		2	BAI2	1	32203099	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7410606	32203099	217047522	8	77338										
KIAA0319L	0	genome.wustl.edu	37	chr1	35916036	35916036	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atctgaggacttagagccatCcagctctgctgtgctcgtgg	12	11	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	35916036	35916036	C	T	SNP	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	missense	c.2137	p.D713N	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	53	0	0	40	13	24.53	-	-	-	T	35916036	C	T	35916036	3	4	978	1	0	0	0	0	1	0	0	0	8221	855	30	2	1044	2	KIAA0319L	1	35916036	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3712937	35916036	213334585	9	77339										
SLC2A1	0	genome.wustl.edu	37	chr1	43392841	43392841	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cctttagtctcaggaactttGaagtaggtgaagatgaagaa	11	5	1	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	43392841	43392841	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	69_37n	-1	known	silent	c.1350	p.F450	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394	65	0	0	57	9	13.64	-	-	-	A	43392841	G	A	43392841	2	1	978	1	0	0	0	0	0	0	0	1	14627	1281	45	2		2	SLC2A1	1	43392841	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7476805	43392841	205857780	10	77340										
PLK3	0	genome.wustl.edu	37	chr1	45271370	45271370	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggacccaagccctgaggcctGaggcctgtgcctgtcaggct	14	14	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	45271370	45271370	G	C	SNP	PLK3	ENST00000465443	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLK3	HGNC	ENSG00000173846	64	0	0	80	9	10.11	-	-	-	C	45271370	G	C	45271370	1	2	978	0	1	0	0	0	0	0	0	0	12171	1305	45	2		2	PLK3	1	45271370	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1878529	45271370	203979251	11	77341										
USP24	0	genome.wustl.edu	37	chr1	55572941	55572941	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccttttctgccccacagagtGaaagaagggtcttgatgagg	12	9	2	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	55572941	55572941	G	A	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.4733	p.S1578L	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	100	0	0	85	11	11.46	-	-	-	A	55572941	G	A	55572941	3	1	978	1	0	0	0	0	1	0	0	0	17152	1294	45	2	3245	2	USP24	1	55572941	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	10301571	55572941	193677680	12	77342										
MYSM1	0	genome.wustl.edu	37	chr1	59127121	59127121	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tattatccatcttgtcttttCaaatactaatccccactgag	3	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	59127121	59127121	C	T	SNP	MYSM1	ENST00000472487	human	ensembl	69_37n	-1	known	missense	c.2227	p.E743K	1.000	NULL	pfam_SWIRM,pfam_JAB1_Mov34_MPN_PAD1,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB1_Mov34_MPN_PAD1,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601	33	0	0	43	5	10.42	-	-	-	T	59127121	C	T	59127121	3	4	978	1	0	0	0	0	1	0	0	0	10173	835	29	2	271	2	MYSM1	1	59127121	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3554180	59127121	190123500	13	77343										
DEPDC1	0	genome.wustl.edu	37	chr1	68948311	68948311	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaacttcctcccattatgtCattagcactcactcttctgt	3	14	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	68948311	68948311	C	T	SNP	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	missense	c.1180	p.D394N	0.003	superfamily_Rho_GTPase_activation_prot	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	108	0	0	95	17	15.18	-	-	-	T	68948311	C	T	68948311	3	4	978	1	0	0	0	0	1	0	0	0	4475	826	29	2	1275	2	DEPDC1	1	68948311	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9821190	68948311	180302310	14	77344										
MSH4	0	genome.wustl.edu	37	chr1	76349502	76349502	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctttgtcagattatggcccaGattggtaagttatggcttta	10	6	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	76349502	76349502	G	A	SNP	MSH4	ENST00000263187	human	ensembl	69_37n	1	known	silent	c.2103	p.Q701	0.998	pfam_DNA_mismatch_repair_MutS_C,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	53	0	0	49	6	10.71	-	-	-	A	76349502	G	A	76349502	2	1	978	1	0	0	0	0	0	0	0	1	9944	933	33	2		2	MSH4	1	76349502	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7401191	76349502	172901119	15	77345										
DNAJB4	0	genome.wustl.edu	37	chr1	78478888	78478888	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aatgggtggtggtagagattCtgaagaaatggaaatagatg	15	1	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	78478888	78478888	C	G	SNP	DNAJB4	ENST00000370763	human	ensembl	69_37n	1	known	missense	c.365	p.S122C	0.110	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB4	HGNC	ENSG00000162616	60	0	0	42	10	19.23	-	-	-	G	78478888	C	G	78478888	3	3	978	1	0	0	0	0	1	0	0	0	4657	913	32	2	371	2	DNAJB4	1	78478888	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2129386	78478888	170771733	16	77346										
ODF2L	0	genome.wustl.edu	37	chr1	86848880	86848880	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctggataaattgtctcctgtCtgagaaaagaatgttataaa	8	5	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	86848880	86848880	C	T	SNP	ODF2L	ENST00000317336	human	ensembl	69_37n	-1	known	splice_site	c.373-1	e4-1	0.124	-	-	-	no_errors	ODF2L	HGNC	ENSG00000122417	31	0	0	44	9	16.67	-	-	-	T	86848880	C	T	86848880	5	4	978	1	0	0	0	0	0	0	1	0	10901	927	32	2	1770	2	ODF2L	1	86848880	Splice_Site	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	8369992	86848880	162401741	17	77347										
CELSR2	0	genome.wustl.edu	37	chr1	109794721	109794721	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tatcccttgccctgccactgGactacaaacttgagcggcag	9	14	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	109794721	109794721	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.2020	p.D674H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	63	0	0	79	15	15.96	-	-	-	C	109794721	G	C	109794721	3	2	978	1	0	0	0	0	1	0	0	0	3251	1174	41	2	2022	2	CELSR2	1	109794721	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	22945841	109794721	139455900	18	77348										
CELSR2	0	genome.wustl.edu	37	chr1	109795780	109795780	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	caccagtgctgggcaactttGagatccttttcaacaactat	7	11	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	109795780	109795780	G	C	SNP	CELSR2	ENST00000271332	human	ensembl	69_37n	1	known	missense	c.3079	p.E1027Q	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	68	0	0	63	15	19.23	-	-	-	C	109795780	G	C	109795780	3	2	978	1	0	0	0	0	1	0	0	0	3251	1291	45	2	3081	2	CELSR2	1	109795780	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1059	109795780	139454841	19	77349										
CSDE1	0	genome.wustl.edu	37	chr1	115262273	115262273	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cactgagaactccacctcatCtcctgcctgtagctcaatgc	6	16	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	115262273	115262273	C	T	SNP	CSDE1	ENST00000369530	human	ensembl	69_37n	-1	known	missense	c.2188	p.D730N	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307	44	0	0	59	15	20.27	-	-	-	T	115262273	C	T	115262273	3	4	978	1	0	0	0	0	1	0	0	0	3961	913	32	2	265	2	CSDE1	1	115262273	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5466493	115262273	133988348	20	77350										
KPRP	0	genome.wustl.edu	37	chr1	152733174	152733174	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcgcctcctgccctgagctGaggccacacgtagagccacg	13	16	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	152733174	152733174	G	A	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	1	known	silent	c.1110	p.L370	0.614	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	49	0	0	60	12	16.67	-	-	-	A	152733174	G	A	152733174	2	1	978	1	0	0	0	0	0	0	0	1	8489	1277	45	2		2	KPRP	1	152733174	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	37470901	152733174	96517447	21	77351										
ATP8B2	0	genome.wustl.edu	37	chr1	154306644	154306644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcagcggaaccctctactgGaaggaaaataagttccctct	8	11	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	154306644	154306644	G	T	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	1	known	missense	c.750	p.W250C	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	47	0	0	61	8	11.59	-	-	-	T	154306644	G	T	154306644	3	4	978	1	0	0	0	0	1	0	0	0	1199	1183	41	2	788	2	ATP8B2	1	154306644	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1573470	154306644	94943977	22	77352										
FLAD1	0	genome.wustl.edu	37	chr1	154960718	154960718	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acttctttctccaaccgcttCacccatgtcctcacagcagg	5	17	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	154960718	154960718	C	T	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	1	known	silent	c.510	p.F170	1.000	pfam_Mopterin-bd,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	71	0	0	100	24	19.2	-	-	-	T	154960718	C	T	154960718	2	4	978	1	0	0	0	0	0	0	0	1	5966	825	29	2		2	FLAD1	1	154960718	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	654074	154960718	94289903	23	77353										
FDPS	0	genome.wustl.edu	37	chr1	155289532	155289532	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcaccagcttcactcctcctCtgcccaggaacctcatcctt	5	19	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	155289532	155289532	C	G	SNP	FDPS	ENST00000489324	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752	95	0	0	138	17	10.97	-	-	-	G	155289532	C	G	155289532	1	3	978	0	1	0	0	0	0	0	0	0	5849	928	32	2		2	FDPS	1	155289532	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	328814	155289532	93961089	24	77354										
FDPS	0	genome.wustl.edu	37	chr1	155289696	155289696	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtgtctgcaacgggccactCcagaacagtaccagatcctg	10	13	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	155289696	155289696	C	G	SNP	FDPS	ENST00000356657	human	ensembl	69_37n	1	known	missense	c.1036	p.P346A	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	84	0	0	152	21	12.14	-	-	-	G	155289696	C	G	155289696	3	3	978	1	0	0	0	0	1	0	0	0	5849	855	30	2	1070	2	FDPS	1	155289696	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	164	155289696	93960925	25	77355										
SMG5	0	genome.wustl.edu	37	chr1	156235970	156235970	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agccctcactggcccgggctGagtcatggcttgagtccgat	13	13	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	156235970	156235970	G	C	SNP	SMG5	ENST00000361813	human	ensembl	69_37n	-1	known	nonsense	c.1457	p.S486*	0.995	NULL	pfam_EST1,smart_PINc_nuc-bd	-	no_errors	SMG5	HGNC	ENSG00000198952	56	0	0	85	19	18.27	-	-	-	C	156235970	G	C	156235970	4	2	978	1	0	0	0	0	0	1	0	0	14885	1294	45	2	1637	2	SMG5	1	156235970	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	946274	156235970	93014651	26	77356										
PRCC	0	genome.wustl.edu	37	chr1	156737729	156737729	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccttgctgcctccgccccctCagatgctggcgccagccttt	9	19	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	156737729	156737729	C	G	SNP	PRCC	ENST00000271526	human	ensembl	69_37n	1	known	missense	c.166	p.Q56E	1.000	NULL	pfam_PRCC_C	-	no_errors	PRCC	HGNC	ENSG00000143294	30	0	0	47	8	14.55	-	-	-	G	156737729	C	G	156737729	3	3	978	1	0	0	0	0	1	0	0	0	12528	827	29	2	168	2	PRCC	1	156737729	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	501759	156737729	92512892	27	77357										
INSRR	0	genome.wustl.edu	37	chr1	156819150	156819150	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccaagcagaggcgcgggttGaaggcgaagtagatcttgcc	15	9	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	156819150	156819150	G	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	silent	c.1332	p.F444	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	29	0	0	73	12	14.12	-	-	-	A	156819150	G	A	156819150	2	1	978	1	0	0	0	0	0	0	0	1	7828	1281	45	2		2	INSRR	1	156819150	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	81421	156819150	92431471	28	77358										
PEA15	0	genome.wustl.edu	37	chr1	160183238	160183238	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccggcagccctctgaggaaGagatcatcaaattggctccc	10	13	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	160183238	160183238	G	A	SNP	PEA15	ENST00000368076	human	ensembl	69_37n	1	known	missense	c.418	p.E140K	1.000	superfamily_DEATH-like	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	PEA15	HGNC	ENSG00000162734	34	0	0	32	10	23.81	-	-	-	A	160183238	G	A	160183238	3	1	978	1	0	0	0	0	1	0	0	0	11784	943	33	2	365	2	PEA15	1	160183238	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3364088	160183238	89067383	29	77359										
LY9	0	genome.wustl.edu	37	chr1	160783497	160783497	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acttctcctgtaacatcactCtaatgtgctccgtgaagggg	9	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	160783497	160783497	C	G	SNP	LY9	ENST00000263285	human	ensembl	69_37n	1	known	missense	c.526	p.L176V	0.303	pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	LY9	HGNC	ENSG00000122224	40	0	0	47	8	14.55	-	-	-	G	160783497	C	G	160783497	3	3	978	1	0	0	0	0	1	0	0	0	9168	912	32	2	668	2	LY9	1	160783497	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	600259	160783497	88467124	30	77360										
DUSP27	0	genome.wustl.edu	37	chr1	167097333	167097333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aatcccagtcagaggaacagGacacctcctcctaccacgag	8	15	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	167097333	167097333	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	69_37n	1	known	missense	c.2965	p.D989N	0.998	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	29	0	0	32	10	23.81	-	-	-	A	167097333	G	A	167097333	3	1	978	1	0	0	0	0	1	0	0	0	4859	1174	41	2	2983	2	DUSP27	1	167097333	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6313836	167097333	82153288	31	77361										
CEP350	0	genome.wustl.edu	37	chr1	180000560	180000560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgggaccagcagcaaactttCtgttaaagattttgagcaga	10	7	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	180000560	180000560	C	T	SNP	CEP350	ENST00000367607	human	ensembl	69_37n	1	known	missense	c.3656	p.S1219F	0.406	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	28	0	0	50	6	10.71	-	-	-	T	180000560	C	T	180000560	3	4	978	1	0	0	0	0	1	0	0	0	3283	913	32	2	3710	2	CEP350	1	180000560	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	12903227	180000560	69250061	32	77362										
FAM129A	0	genome.wustl.edu	37	chr1	184863324	184863324	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgcttcatacaaaatagttCcaggcgccaatggtggctta	9	10	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	184863324	184863324	C	G	SNP	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	missense	c.203	p.G68A	0.597	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	27	0	0	40	5	11.11	-	-	-	G	184863324	C	G	184863324	3	3	978	1	0	0	0	0	1	0	0	0	5476	855	30	2	2631	2	FAM129A	1	184863324	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4862764	184863324	64387297	33	77363										
CNTN2	0	genome.wustl.edu	37	chr1	205030518	205030518	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cggagaactccaagggccgaGacaccgtgcagggccgcatc	14	14	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	205030518	205030518	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	69_37n	1	known	missense	c.943	p.D315N	0.985	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC	ENSG00000184144	42	0	0	64	9	12.33	-	-	-	A	205030518	G	A	205030518	3	1	978	1	0	0	0	0	1	0	0	0	3671	942	33	2	969	2	CNTN2	1	205030518	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	20167194	205030518	44220103	34	77364										
INTS7	0	genome.wustl.edu	37	chr1	212141900	212141900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggaggtcatttcctaaggtCatggcaattgttgtggcaat	12	6	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	212141900	212141900	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.1965	p.M655I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	68	0	0	79	13	14.13	-	-	-	T	212141900	C	T	212141900	3	4	978	1	0	0	0	0	1	0	0	0	7837	826	29	2	951	2	INTS7	1	212141900	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7111382	212141900	37108721	35	77365										
ATF3	0	genome.wustl.edu	37	chr1	212788564	212788564	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcgctggaatcagtcactgtCagcgacagacccctcggggt	13	13	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	212788564	212788564	C	T	SNP	ATF3	ENST00000341491	human	ensembl	69_37n	1	known	silent	c.201	p.V67	0.947	superfamily_Euk_TF_DNA-bd	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772	29	0	0	57	7	10.94	-	-	-	T	212788564	C	T	212788564	2	4	978	1	0	0	0	0	0	0	0	1	1085	813	29	2		2	ATF3	1	212788564	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	646664	212788564	36462057	36	77366										
TARBP1	0	genome.wustl.edu	37	chr1	234556513	234556513	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtttttcactctgtgctgtaGagaattcacatagtagcgtt	9	7	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	234556513	234556513	G	C	SNP	TARBP1	ENST00000040877	human	ensembl	69_37n	-1	known	missense	c.3490	p.L1164V	0.707	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588	32	0	0	32	6	15.79	-	-	-	C	234556513	G	C	234556513	3	2	978	1	0	0	0	0	1	0	0	0	15647	933	33	2	1415	2	TARBP1	1	234556513	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	21767949	234556513	14694108	37	77367										
RGS7	0	genome.wustl.edu	37	chr1	240969544	240969544	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	actgggggctccgggagccaGaaactcttgccatatttcct	11	12	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	240969544	240969544	G	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	silent	c.1165	p.L389	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	50	0	0	50	8	13.79	-	-	-	A	240969544	G	A	240969544	2	1	978	1	0	0	0	0	0	0	0	1	13394	933	33	2		2	RGS7	1	240969544	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6413031	240969544	8281077	38	77368										
EXO1	0	genome.wustl.edu	37	chr1	242048771	242048771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aacaagccggggttacagatCaaactcaatgagctctggaa	10	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	242048771	242048771	C	G	SNP	EXO1	ENST00000348581	human	ensembl	69_37n	1	known	missense	c.2367	p.I789M	0.855	NULL	pfam_XPG/RAD2_endonuclease,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	EXO1	HGNC	ENSG00000174371	29	0	0	43	7	14	-	-	-	G	242048771	C	G	242048771	3	3	978	1	0	0	0	0	1	0	0	0	5336	816	29	2	2413	2	EXO1	1	242048771	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1079227	242048771	7201850	39	77369										
OR2W5	0	genome.wustl.edu	37	chr1	247655180	247655180	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cacctcacagtggtctctctCttctacggaaccatcatcta	5	15	6	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	1	247655180	247655180	C	T	SNP	OR2W5	ENST00000522351	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.946	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664	62	0	0	100	16	13.79	-	-	-	T	247655180	C	T	247655180	1	4	978	0	1	0	0	0	0	0	0	0	11107	913	32	2		2	OR2W5	1	247655180	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5606409	247655180	1595441	40	77370										
ROCK2	0	genome.wustl.edu	37	chr2	11348448	11348448	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atctttctgtttaaggagctCatttattttctgctgtgact	7	7	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	11348448	11348448	C	G	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	missense	c.2329	p.E777Q	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	26	0	0	35	7	16.67	-	-	-	G	11348448	C	G	11348448	3	3	978	1	0	0	0	0	1	0	0	0	13604	835	29	2	1897	2	ROCK2	2	11348448	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		11348448	231850925	41	77371										
KCNK3	0	genome.wustl.edu	37	chr2	26950898	26950898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaaggaccaggccctgcagaCgcagccgcagtacgtggcct	14	14	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	26950898	26950898	C	T	SNP	KCNK3	ENST00000302909	human	ensembl	69_37n	1	known	missense	c.647	p.T216M	1.000	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK1	pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK1,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303	45	0	0	37	10	21.28	-	-	-	T	26950898	C	T	26950898	3	4	978	1	0	0	0	0	1	0	0	0	8121	536	19	1	653	1	KCNK3	2	26950898	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	15602450	26950898	216248475	42	77372										
YPEL5	0	genome.wustl.edu	37	chr2	30381839	30381839	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagaggttgtgagaatctaaGatggaacctttctttctttc	9	6	3	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	30381839	30381839	G	C	SNP	YPEL5	ENST00000495673	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YPEL5	HGNC	ENSG00000119801	19	0	0	20	4	16.67	-	-	-	C	30381839	G	C	30381839	1	2	978	0	1	0	0	0	0	0	0	0	17590	957	33	2		2	YPEL5	2	30381839	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3430941	30381839	212817534	43	77373										
VIT	0	genome.wustl.edu	37	chr2	37014283	37014283	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttccgcagactgcaaaattGacttgtcgtttttaattgat	8	7	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	37014283	37014283	G	A	SNP	VIT	ENST00000379242	human	ensembl	69_37n	1	known	missense	c.922	p.D308N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	47	0	0	44	10	18.52	-	-	-	A	37014283	G	A	37014283	3	1	978	1	0	0	0	0	1	0	0	0	17268	1290	45	2	1089	2	VIT	2	37014283	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6632444	37014283	206185090	44	77374										
STON1-GTF2A1L	0	genome.wustl.edu	37	chr2	48808393	48808393	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccaggaagcaaaaagatgttCtcatcaagaaacaaggagat	9	7	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	48808393	48808393	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	69_37n	1	known	silent	c.621	p.F207	0.003	NULL	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781	23	0	0	35	5	12.5	-	-	-	T	48808393	C	T	48808393	2	4	978	1	0	0	0	0	0	0	0	1	15408	912	32	2		2	STON1-GTF2A1L	2	48808393	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11794110	48808393	194390980	45	77375										
POLE4	0	genome.wustl.edu	37	chr2	75196697	75196697	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gccgggataagcagagatctCatcaattagctcttctctgc	9	11	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	75196697	75196697	C	T	SNP	POLE4	ENST00000233699	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.069	-	-	-	no_errors	POLE4	HGNC	ENSG00000115350	50	0	0	38	5	11.63	-	-	-	T	75196697	C	T	75196697	1	4	978	0	1	0	0	0	0	0	0	0	12273	841	29	2		2	POLE4	2	75196697	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	26388304	75196697	168002676	46	77376										
GGCX	0	genome.wustl.edu	37	chr2	85777092	85777092	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gacaggatcaggatttgactCaggaggattagaatgtgaag	14	4	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	85777092	85777092	C	T	SNP	GGCX	ENST00000233838	human	ensembl	69_37n	-1	known	missense	c.2242	p.E748K	0.184	NULL	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	36	0	0	32	4	11.11	-	-	-	T	85777092	C	T	85777092	3	4	978	1	0	0	0	0	1	0	0	0	6408	835	29	2	38	2	GGCX	2	85777092	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	10580395	85777092	157422281	47	77377										
POLR1A	0	genome.wustl.edu	37	chr2	86265851	86265851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catgaagcgcaggatgtcctCgggtctcaggcacttctcct	11	13	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	86265851	86265851	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	69_37n	-1	known	missense	c.4006	p.E1336K	0.001	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	62	0	0	74	9	10.84	-	-	-	T	86265851	C	T	86265851	3	4	978	1	0	0	0	0	1	0	0	0	12283	893	31	1	1188	1	POLR1A	2	86265851	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	488759	86265851	156933522	48	77378										
BCL2L11	0	genome.wustl.edu	37	chr2	111921798	111921798	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cattgtccgcctggtgtggaGaatgcattgacaggttcttt	12	8	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	111921798	111921798	G	C	SNP	BCL2L11	ENST00000393256	human	ensembl	69_37n	1	known	missense	c.587	p.R196T	0.998	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	36	0	0	40	6	13.04	-	-	-	C	111921798	G	C	111921798	3	2	978	1	0	0	0	0	1	0	0	0	1373	942	33	2	726	2	BCL2L11	2	111921798	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	25655947	111921798	131277575	49	77379										
POLR2D	0	genome.wustl.edu	37	chr2	128605577	128605577	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttttctccaaaggaattctCaactgtcttcaacagaattt	5	9	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	128605577	128605577	C	G	SNP	POLR2D	ENST00000487079	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	POLR2D	HGNC	ENSG00000144231	41	0	0	47	12	20.34	-	-	-	G	128605577	C	G	128605577	1	3	978	0	1	0	0	0	0	0	0	0	12291	841	29	2		2	POLR2D	2	128605577	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	16683779	128605577	114593796	50	77380										
THSD7B	0	genome.wustl.edu	37	chr2	138163218	138163218	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgatgacaaccggtcagcaGaaatgatggaatgcctcaag	11	9	2	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	138163218	138163218	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	1	known	missense	c.2536	p.E846K	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	25	0	0	40	6	13.04	-	-	-	A	138163218	G	A	138163218	3	1	978	1	0	0	0	0	1	0	0	0	15975	943	33	2	2489	2	THSD7B	2	138163218	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	9557641	138163218	105036155	51	77381										
LRP1B	0	genome.wustl.edu	37	chr2	141253250	141253250	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggctacagggaaagcctgaaGagcattcatcaatgtctaca	10	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	141253250	141253250	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.8918	p.S2973F	0.998	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	72	0	0	67	12	15.19	-	-	-	A	141253250	G	A	141253250	3	1	978	1	0	0	0	0	1	0	0	0	9021	942	33	2	5025	2	LRP1B	2	141253250	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3090032	141253250	101946123	52	77382										
KCNH7	0	genome.wustl.edu	37	chr2	163291988	163291988	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagtgagcaatcagggcaaaGatgcacattaagagcattag	11	7	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	163291988	163291988	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	69_37n	-1	known	silent	c.1674	p.I558	0.979	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	51	0	0	35	6	14.63	-	-	-	A	163291988	G	A	163291988	2	1	978	1	0	0	0	0	0	0	0	1	8091	932	33	2		2	KCNH7	2	163291988	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	22038738	163291988	79907385	53	77383										
COBLL1	0	genome.wustl.edu	37	chr2	165578606	165578606	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttatctgtctcatccacgctCatggatttcactatacaaga	5	11	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	165578606	165578606	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	missense	c.1173	p.M391I	0.024	pfam_Cordon-bleu_domain	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	45	0	0	39	7	15.22	-	-	-	T	165578606	C	T	165578606	3	4	978	1	0	0	0	0	1	0	0	0	3684	826	29	2	2561	2	COBLL1	2	165578606	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2286618	165578606	77620767	54	77384										
GAD1	0	genome.wustl.edu	37	chr2	171702291	171702291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgattttgataaagtgcaatGaaaggtaggcaggggagggt	16	2	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	171702291	171702291	G	A	SNP	GAD1	ENST00000358196	human	ensembl	69_37n	1	known	missense	c.943	p.E315K	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GAD1	HGNC	ENSG00000128683	43	0	0	46	12	20.69	-	-	-	A	171702291	G	A	171702291	3	1	978	1	0	0	0	0	1	0	0	0	6228	1291	45	2	1014	2	GAD1	2	171702291	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6123685	171702291	71497082	55	77385										
CHN1	0	genome.wustl.edu	37	chr2	175809639	175809639	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcaagtacaggtaattcttcGaggatgaggggcttcctgtt	13	7	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	175809639	175809639	G	C	SNP	CHN1	ENST00000409900	human	ensembl	69_37n	-1	known	missense	c.91	p.R31G	1.000	pirsf_N-chimaerin	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656	32	0	0	25	5	16.67	-	-	-	C	175809639	G	C	175809639	3	2	978	1	0	0	0	0	1	0	0	0	3391	1066	37	3	1332	3	CHN1	2	175809639	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4107348	175809639	67389734	56	77386										
TTN	0	genome.wustl.edu	37	chr2	179442805	179442805	+	Missense_Mutation	SNP	C	C	G													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cataactcggaattcatattCaagaccttcagttaatcctg							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	179442805	179442805	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60733	p.E20245Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	37	0	0	40	6	13.04	-	-	-	G	179442805	C	G	179442805	3	3	978	1	0	0	0	0	1	0	0	0	16832	835	29	2	39706	2	TTN	2	179442805	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3633166	179442805	63756568	57	77387	543	2								
TTN	0	genome.wustl.edu	37	chr2	179442814	179442814	+	Missense_Mutation	SNP	C	C	T													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaattcatattcaagaccttCagttaatcctgtcactttaa							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	179442814	179442814	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60724	p.E20242K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	31	0	0	38	5	11.63	-	-	-	T	179442814	C	T	179442814	3	4	978	1	0	0	0	0	1	0	0	0	16832	835	29	2	39715	2	TTN	2	179442814	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9	179442814	63756559	58	77388	543	2								
TTN	0	genome.wustl.edu	37	chr2	179531966	179531966	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	taactagagaattataccttCagttggaggatgttctggaa	10	5	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	179531966	179531966	C	T	SNP	TTN	ENST00000589042	human	ensembl	69_37n	-1	putative	missense	c.35794	p.E11932K	0.053	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	47	0	0	53	10	15.87	-	-	-	T	179531966	C	T	179531966	3	4	978	1	0	0	0	0	1	0	0	0	16832	841	29	2		2	TTN	2	179531966	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	89152	179531966	63667407	59	77389										
TTN	0	genome.wustl.edu	37	chr2	179611025	179611025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttctaaatcaatttttagttCtttgtcttctccctcccttg	3	11	5	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	179611025	179611025	C	G	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.16102	p.E5368Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	17	0	0	11	4	26.67	-	-	-	G	179611025	C	G	179611025	3	3	978	1	0	0	0	0	1	0	0	0	16832	922	32	2	94195	2	TTN	2	179611025	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	79059	179611025	63588348	60	77390										
FSIP2	0	genome.wustl.edu	37	chr2	186659336	186659336	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	attgcagtggaagaacttttGaataagttgtatcaaagagt	10	3	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	186659336	186659336	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	1	known	silent	c.7740	p.L2580	0.639	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	15	0	0	20	5	20	-	-	-	A	186659336	G	A	186659336	2	1	978	1	0	0	0	0	0	0	0	1	6124	1281	45	2		2	FSIP2	2	186659336	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7048311	186659336	56540037	61	77391										
CASP8	0	genome.wustl.edu	37	chr2	202131498	202131498	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcagacaccaggcagggctCaaatttctgcctacaggtgg	11	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	202131498	202131498	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	1	known	nonsense	c.466	p.Q156*	0.995	superfamily_DEATH-like	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	50	0	0	51	10	16.39	-	-	-	T	202131498	C	T	202131498	4	4	978	1	0	0	0	0	0	1	0	0	2702	827	29	2	472	2	CASP8	2	202131498	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	15472162	202131498	41067875	62	77392										
ICOS	0	genome.wustl.edu	37	chr2	204820495	204820495	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggcaaatactctgcgatctCactaagacaaaaggaagtgg	11	8	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	204820495	204820495	C	G	SNP	ICOS	ENST00000316386	human	ensembl	69_37n	1	known	silent	c.195	p.L65	0.637	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600	47	0	0	49	6	10.91	-	-	-	G	204820495	C	G	204820495	2	3	978	1	0	0	0	0	0	0	0	1	7540	813	29	2		2	ICOS	2	204820495	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2688997	204820495	38378878	63	77393										
MAP2	0	genome.wustl.edu	37	chr2	210557365	210557365	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcagatttacttacagcctcGaagatggagttccacgatca	8	10	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	210557365	210557365	G	C	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	1	known	silent	c.471	p.S157	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	62	0	0	62	17	21.52	-	-	-	C	210557365	G	C	210557365	2	2	978	1	0	0	0	0	0	0	0	1	9306	1045	37	3		3	MAP2	2	210557365	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5736870	210557365	32642008	64	77394										
SAG	0	genome.wustl.edu	37	chr2	234255501	234255501	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gagtttgctcgccataatctGaaagatgcaggagaagctga	12	7	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	234255501	234255501	G	A	SNP	SAG	ENST00000409110	human	ensembl	69_37n	1	known	silent	c.1161	p.L387	1.000	superfamily_Ig_E-set,prints_Arrestin	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561	91	0	0	88	24	21.43	-	-	-	A	234255501	G	A	234255501	2	1	978	1	0	0	0	0	0	0	0	1	13894	1277	45	2		2	SAG	2	234255501	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	23698136	234255501	8943872	65	77395										
DGKD	0	genome.wustl.edu	37	chr2	234350626	234350626	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctctccgaaatcgacagcctCaaccttcataaacaggtacc	5	15	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	234350626	234350626	C	A	SNP	DGKD	ENST00000430834	human	ensembl	69_37n	1	known	nonsense	c.161	p.S54*	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DGKD	HGNC	ENSG00000077044	68	0	0	77	15	16.3	-	-	-	A	234350626	C	A	234350626	4	1	978	1	0	0	0	0	0	1	0	0	4503	813	29	2	1241	2	DGKD	2	234350626	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	95125	234350626	8848747	66	77396										
RBM44	0	genome.wustl.edu	37	chr2	238742663	238742663	+	Missense_Mutation	SNP	G	G	C													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtcaagaagaattgtaagcaGattgaatctgctaaattatt							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	238742663	238742663	G	C	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.2913	p.Q971H	0.016	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	46	0	0	39	8	17.02	-	-	-	C	238742663	G	C	238742663	3	2	978	1	0	0	0	0	1	0	0	0	13221	933	33	2	2963	2	RBM44	2	238742663	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4392037	238742663	4456710	67	77397	544	2								
RBM44	0	genome.wustl.edu	37	chr2	238742667	238742667	+	Missense_Mutation	SNP	G	G	A													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agaagaattgtaagcagattGaatctgctaaattattacct							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	238742667	238742667	G	A	SNP	RBM44	ENST00000316997	human	ensembl	69_37n	1	known	missense	c.2917	p.E973K	0.007	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483	45	0	0	39	8	17.02	-	-	-	A	238742667	G	A	238742667	3	1	978	1	0	0	0	0	1	0	0	0	13221	1291	45	2	2967	2	RBM44	2	238742667	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4	238742667	4456706	68	77398	544	2								
OR6B2	0	genome.wustl.edu	37	chr2	240969292	240969292	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagtccgtgcaggccagcttGaggatgggggaaatgtcaca	15	8	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	240969292	240969292	G	C	SNP	OR6B2	ENST00000402971	human	ensembl	69_37n	-1	known	silent	c.555	p.L185	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083	49	0	0	55	12	17.91	-	-	-	C	240969292	G	C	240969292	2	2	978	1	0	0	0	0	0	0	0	1	11261	1277	45	2		2	OR6B2	2	240969292	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2226625	240969292	2230081	69	77399										
RNPEPL1	0	genome.wustl.edu	37	chr2	241513987	241513987	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctggacgccctgcaccggcaGatgaagcttctgggagagga	15	11	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	2	241513987	241513987	G	C	SNP	RNPEPL1	ENST00000270357	human	ensembl	69_37n	1	known	missense	c.537	p.Q179H	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327	36	0	0	41	20	32.79	-	-	-	C	241513987	G	C	241513987	3	2	978	1	0	0	0	0	1	0	0	0	13596	933	33	2	551	2	RNPEPL1	2	241513987	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	544695	241513987	1685386	70	77400										
CHL1	0	genome.wustl.edu	37	chr3	386364	386364	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccatcctcaaaggggaaatcTtgctgcttgagtgttttgct	10	9	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	386364	386364	T	A	SNP	CHL1	ENST00000256509	human	ensembl	69_37n	1	known	missense	c.820	p.L274M	0.788	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CHL1	HGNC	ENSG00000134121	80	0	0	70	15	17.65	-	-	-	A	386364	T	A	386364	3	1	978	1	0	0	0	0	1	0	0	0	3378	1606	56	5	846	5	CHL1	3	386364	Missense_Mutation	SNP	T	TCGA-PE-A5DE-01A-11D-A27P-09		386364	197636066	71	77401										
ITPR1	0	genome.wustl.edu	37	chr3	4776888	4776888	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tctatgagcaggggtgagatGagtctggccgaggttcagtg	17	6	3	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	4776888	4776888	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	1	known	missense	c.5349	p.M1783I	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	62	0	0	60	17	22.08	-	-	-	A	4776888	G	A	4776888	3	1	978	1	0	0	0	0	1	0	0	0	7974	1290	45	2	5560	2	ITPR1	3	4776888	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4390524	4776888	193245542	72	77402										
PPARG	0	genome.wustl.edu	37	chr3	12434121	12434121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atccctttgcagggtttcttCcggagaacaatcagattgaa	9	9	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	12434121	12434121	C	G	SNP	PPARG	ENST00000287820	human	ensembl	69_37n	1	known	missense	c.489	p.F163L	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	68	0	0	68	12	15	-	-	-	G	12434121	C	G	12434121	3	3	978	1	0	0	0	0	1	0	0	0	12372	854	30	2	503	2	PPARG	3	12434121	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7657233	12434121	185588309	73	77403										
SH3BP5	0	genome.wustl.edu	37	chr3	15300422	15300422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agcaccaacaccgcatccccGaggccccatggcactggagc	10	18	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	15300422	15300422	G	A	SNP	SH3BP5	ENST00000383791	human	ensembl	69_37n	-1	known	missense	c.805	p.R269W	1.000	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5	HGNC	ENSG00000131370	53	0	0	47	9	16.07	-	-	-	A	15300422	G	A	15300422	3	1	978	1	0	0	0	0	1	0	0	0	14335	1057	37	1	574	1	SH3BP5	3	15300422	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2866301	15300422	182722008	74	77404										
RPSA	0	genome.wustl.edu	37	chr3	39448480	39448480	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gccgccctccagcggaggctCcgagctggggttcggaccag	16	15	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	39448480	39448480	C	G	SNP	RPSA	ENST00000444512	human	ensembl	69_37n	1	known	silent	c.162	p.L54	0.001	NULL	NULL	-	no_errors	RPSA	HGNC	ENSG00000168028	67	0	0	52	12	18.75	-	-	-	G	39448480	C	G	39448480	2	3	978	1	0	0	0	0	0	0	0	1	13749	870	30	2		2	RPSA	3	39448480	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	24148058	39448480	158573950	75	77405										
SETD2	0	genome.wustl.edu	37	chr3	47103760	47103760	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtttgcttgtctgggtctctCtctcttgacctattaggagt	10	9	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	47103760	47103760	C	T	SNP	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	silent	c.6186	p.E2062	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	113	0	0	111	14	11.2	-	-	-	T	47103760	C	T	47103760	2	4	978	1	0	0	0	0	0	0	0	1	14219	912	32	2		2	SETD2	3	47103760	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7655280	47103760	150918670	76	77406										
SMARCC1	0	genome.wustl.edu	37	chr3	47629740	47629740	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cgggccaggagcaggaggcgGagggaccccatctgcaggtg	19	11	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	47629740	47629740	G	C	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.3277	p.P1093A	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	68	0	0	84	14	14.29	-	-	-	C	47629740	G	C	47629740	3	2	978	1	0	0	0	0	1	0	0	0	14864	1174	41	2	44	2	SMARCC1	3	47629740	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	525980	47629740	150392690	77	77407										
ZNF589	0	genome.wustl.edu	37	chr3	48299430	48299430	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cttccatagataccctgtctCaagtattgtggtgatcaaat	7	9	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	48299430	48299430	C	T	SNP	ZNF589	ENST00000454212	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNF589	HGNC	ENSG00000164048	81	0	0	118	17	12.59	-	-	-	T	48299430	C	T	48299430	1	4	978	0	1	0	0	0	0	0	0	0	18117	841	29	2		2	ZNF589	3	48299430	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	669690	48299430	149723000	78	77408										
WDR6	0	genome.wustl.edu	37	chr3	49050837	49050837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgggctccgtatagtgcccGatgggagcatggttatcctg	14	10	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	49050837	49050837	G	A	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	1	known	missense	c.1960	p.D654N	0.975	superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	30	0	0	47	7	12.96	-	-	-	A	49050837	G	A	49050837	3	1	978	1	0	0	0	0	1	0	0	0	17407	1058	37	1	1966	1	WDR6	3	49050837	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	751407	49050837	148971593	79	77409										
ABHD14A	0	genome.wustl.edu	37	chr3	52011898	52011898	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cctctccagactgtggtacaGacctccatgagccggtccca	9	16	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	52011898	52011898	G	C	SNP	ABHD14A	ENST00000273596	human	ensembl	69_37n	1	known	missense	c.81	p.Q27H	0.057	NULL	pfam_AB_hydrolase_N	-	no_errors	ABHD14A	HGNC	ENSG00000248487	26	0	0	29	4	12.12	-	-	-	C	52011898	G	C	52011898	3	2	978	1	0	0	0	0	1	0	0	0	79	933	33	2	87	2	ABHD14A	3	52011898	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2961061	52011898	146010532	80	77410										
PTPRG	0	genome.wustl.edu	37	chr3	62118323	62118323	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gatcctattatccacgggttGaagggtgtcgtacatcatgg	12	8	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	62118323	62118323	G	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.663	p.L221F	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	103	0	0	89	18	16.82	-	-	-	C	62118323	G	C	62118323	3	2	978	1	0	0	0	0	1	0	0	0	12885	1281	45	2	685	2	PTPRG	3	62118323	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	10106425	62118323	135904107	81	77411										
PTPRG	0	genome.wustl.edu	37	chr3	62189284	62189284	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggagagaaggactccgaaaaGaaggagaagagtggggtgac	18	4	0	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	62189284	62189284	G	C	SNP	PTPRG	ENST00000474889	human	ensembl	69_37n	1	known	missense	c.1815	p.K605N	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	30	0	0	25	4	13.79	-	-	-	C	62189284	G	C	62189284	3	2	978	1	0	0	0	0	1	0	0	0	12885	933	33	2	1861	2	PTPRG	3	62189284	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	70961	62189284	135833146	82	77412										
ADAMTS9	0	genome.wustl.edu	37	chr3	64554192	64554192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catttcgttgtttatgccctCgaccacaagagacagaacac	7	12	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	64554192	64554192	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4376	p.R1459Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	38	0	0	40	7	14.89	-	-	-	T	64554192	C	T	64554192	3	4	978	1	0	0	0	0	1	0	0	0	273	884	31	1	1475	1	ADAMTS9	3	64554192	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2364908	64554192	133468238	83	77413										
OR5H2	0	genome.wustl.edu	37	chr3	98002001	98002001	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cccaaaatgttggttaatttCttggccaaaaacaggatgat	8	7	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	98002001	98002001	C	T	SNP	OR5H2	ENST00000355273	human	ensembl	69_37n	1	known	silent	c.270	p.F90	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938	58	0	0	54	8	12.9	-	-	-	T	98002001	C	T	98002001	2	4	978	1	0	0	0	0	0	0	0	1	11235	912	32	2		2	OR5H2	3	98002001	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	33447809	98002001	100020429	84	77414										
SENP7	0	genome.wustl.edu	37	chr3	101212728	101212728	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atttaccacctgcaaagggaGagtccagcgttctgagcttc	10	11	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	101212728	101212728	G	C	SNP	SENP7	ENST00000394095	human	ensembl	69_37n	-1	known	missense	c.175	p.L59V	0.995	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	47	0	0	31	6	16.22	-	-	-	C	101212728	G	C	101212728	3	2	978	1	0	0	0	0	1	0	0	0	14139	942	33	2	3065	2	SENP7	3	101212728	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3210727	101212728	96809702	85	77415										
CD47	0	genome.wustl.edu	37	chr3	107766132	107766132	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cggagtccatcacttcacttCagttattctggaaaattgaa	7	9	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	107766132	107766132	C	T	SNP	CD47	ENST00000355354	human	ensembl	69_37n	-1	known	silent	c.917	p.*306	0.996	NULL	pfam_CD47_Vset,pfam_CD47_TM,pfscan_Ig-like	-	no_errors	CD47	HGNC	ENSG00000196776	39	0	0	69	9	11.54	-	-	-	T	107766132	C	T	107766132	2	4	978	1	0	0	0	0	0	0	0	1	3048	837	29	2		2	CD47	3	107766132	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	6553404	107766132	90256298	86	77416										
PLCXD2	0	genome.wustl.edu	37	chr3	111439652	111439652	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcatcacatctgacttcgtgGacctggtggactttgctgcg	11	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	111439652	111439652	G	A	SNP	PLCXD2	ENST00000472215	human	ensembl	69_37n	1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PLCXD2	HGNC	ENSG00000240891	60	0	0	84	17	16.83	-	-	-	A	111439652	G	A	111439652	1	1	978	0	1	0	0	0	0	0	0	0	12116	1174	41	2		2	PLCXD2	3	111439652	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3673520	111439652	86582778	87	77417										
KIAA2018	0	genome.wustl.edu	37	chr3	113376553	113376553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gacagcacgcttagcagaatCcttacggctttcatggcttg	10	11	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	113376553	113376553	C	G	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.3976	p.D1326H	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	57	0	0	72	10	12.2	-	-	-	G	113376553	C	G	113376553	3	3	978	1	0	0	0	0	1	0	0	0	8320	855	30	2	2765	2	KIAA2018	3	113376553	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1936901	113376553	84645877	88	77418										
CASR	0	genome.wustl.edu	37	chr3	122003562	122003562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcagcagcaagagcaacagcGaagacccattcccacagccc	8	16	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	122003562	122003562	G	A	SNP	CASR	ENST00000498619	human	ensembl	69_37n	1	known	missense	c.2791	p.E931K	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	61	0	0	59	9	13.24	-	-	-	A	122003562	G	A	122003562	3	1	978	1	0	0	0	0	1	0	0	0	2707	1059	37	1	2813	1	CASR	3	122003562	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	8627009	122003562	76018868	89	77419										
SEC22A	0	genome.wustl.edu	37	chr3	122928120	122928120	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagagatggactgccactttCtgcttctactgattatgaac	8	10	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	122928120	122928120	C	T	SNP	SEC22A	ENST00000309934	human	ensembl	69_37n	1	known	missense	c.56	p.S19F	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22A	HGNC	ENSG00000121542	47	0	0	36	16	30.77	-	-	-	T	122928120	C	T	122928120	3	4	978	1	0	0	0	0	1	0	0	0	14076	913	32	2	58	2	SEC22A	3	122928120	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	924558	122928120	75094310	90	77420										
PCCB	0	genome.wustl.edu	37	chr3	136012615	136012615	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	caggacacctcctacctgttCatcactggccctgatgttgt	8	14	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	136012615	136012615	C	T	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	1	known	silent	c.672	p.F224	0.996	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	56	0	0	47	13	21.67	-	-	-	T	136012615	C	T	136012615	2	4	978	1	0	0	0	0	0	0	0	1	11578	825	29	2		2	PCCB	3	136012615	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	13084495	136012615	62009815	91	77421										
STAG1	0	genome.wustl.edu	37	chr3	136192453	136192453	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tatagactctgcagagctttCaaacacttcagcctgacttc	6	12	3	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	136192453	136192453	C	G	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.1053	p.L351F	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	24	0	0	22	4	15.38	-	-	-	G	136192453	C	G	136192453	3	3	978	1	0	0	0	0	1	0	0	0	15333	825	29	2	2819	2	STAG1	3	136192453	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	179838	136192453	61829977	92	77422										
PLS1	0	genome.wustl.edu	37	chr3	142402873	142402873	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tttaaacctagctctgaattCtgcctcagccattggttgta	7	10	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	142402873	142402873	C	G	SNP	PLS1	ENST00000337777	human	ensembl	69_37n	1	known	missense	c.605	p.S202C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS1	HGNC	ENSG00000120756	34	0	0	50	14	21.88	-	-	-	G	142402873	C	G	142402873	3	3	978	1	0	0	0	0	1	0	0	0	12181	913	32	2	627	2	PLS1	3	142402873	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	6210420	142402873	55619557	93	77423										
SI	0	genome.wustl.edu	37	chr3	164700809	164700809	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cctggtttaaattaaattgtAcagataaatataggtctctt	6	5	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	164700809	164700809	A	T	SNP	SI	ENST00000264382	human	ensembl	69_37n	-1	known	missense	c.5228	p.V1743E	0.027	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	47	0	0	42	12	22.22	-	-	-	T	164700809	A	T	164700809	3	4	978	1	0	0	0	0	1	0	0	0	14386	391	14	5	267	5	SI	3	164700809	Missense_Mutation	SNP	A	TCGA-PE-A5DE-01A-11D-A27P-09	22297936	164700809	33321621	94	77424										
PIK3CA	0	genome.wustl.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0	55	14	20.29	-	-	-	A	178936091	G	A	178936091	3	1	978	1	0	0	0	0	1	0	0	0	11987	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	14235282	178936091	19086339	95	77425										
KLHL24	0	genome.wustl.edu	37	chr3	183368615	183368615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctccgtgatgcatgtgccaaGttcttggaggagcaacttga	12	9	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	183368615	183368615	G	C	SNP	KLHL24	ENST00000242810	human	ensembl	69_37n	1	known	missense	c.471	p.K157N	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796	25	0	0	27	4	12.9	-	-	-	C	183368615	G	C	183368615	3	2	978	1	0	0	0	0	1	0	0	0	8432	1020	36	4	473	4	KLHL24	3	183368615	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4432524	183368615	14653815	96	77426										
ECE2	0	genome.wustl.edu	37	chr3	183976326	183976326	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	accttgcttccttcaggactCagatcatgaggacttcctta	7	12	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	183976326	183976326	C	G	SNP	ECE2	ENST00000324557	human	ensembl	69_37n	1	known	nonsense	c.731	p.S244*	0.984	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12	-	no_errors	ECE2	HGNC	ENSG00000145194	36	0	0	44	12	21.43	-	-	-	G	183976326	C	G	183976326	4	3	978	1	0	0	0	0	0	1	0	0	4925	838	29	2	741	2	ECE2	3	183976326	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	607711	183976326	14046104	97	77427										
LPP	0	genome.wustl.edu	37	chr3	188326971	188326971	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctccactggttcaacagcctCtcctccagtttcgaccccag	6	18	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	3	188326971	188326971	C	G	SNP	LPP	ENST00000312675	human	ensembl	69_37n	1	known	missense	c.452	p.S151C	0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012	31	0	0	28	5	14.71	-	-	-	G	188326971	C	G	188326971	3	3	978	1	0	0	0	0	1	0	0	0	8989	913	32	2	466	2	LPP	3	188326971	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4350645	188326971	9695459	98	77428										
TLR1	0	genome.wustl.edu	37	chr4	38800365	38800365	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gagaccgttttttgacctatCaactaaaaattcactttctt	4	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	38800365	38800365	C	G	SNP	TLR1	ENST00000308979	human	ensembl	69_37n	-1	known	missense	c.88	p.D30H	0.023	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,prints_IL1_rcpt_1,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	49	0	0	37	5	11.9	-	-	-	G	38800365	C	G	38800365	3	3	978	1	0	0	0	0	1	0	0	0	16044	826	29	2	2276	2	TLR1	4	38800365	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		38800365	152353911	99	77429										
CWH43	0	genome.wustl.edu	37	chr4	48990513	48990513	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggatgtgtttcttggtctctCtaccatgacctgggaccgat	11	10	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	48990513	48990513	C	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	1	known	silent	c.63	p.L21	1.000	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	45	0	0	33	9	20.93	-	-	-	G	48990513	C	G	48990513	2	3	978	1	0	0	0	0	0	0	0	1	4104	900	32	2		2	CWH43	4	48990513	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	10190148	48990513	142163763	100	77430										
PDLIM5	0	genome.wustl.edu	37	chr4	95444938	95444938	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcgatgtggttctcagcattGatggaataaatgcacaagga	12	6	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	95444938	95444938	G	C	SNP	PDLIM5	ENST00000317968	human	ensembl	69_37n	1	known	missense	c.160	p.D54H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110	29	0	0	39	6	13.33	-	-	-	C	95444938	G	C	95444938	3	2	978	1	0	0	0	0	1	0	0	0	11756	1290	45	2	166	2	PDLIM5	4	95444938	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	46454425	95444938	95709338	101	77431										
ADH5	0	genome.wustl.edu	37	chr4	99998046	99998046	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtaaatctgctggtaccatCtggcattaatcctttccctt	6	11	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	99998046	99998046	C	T	SNP	ADH5	ENST00000296412	human	ensembl	69_37n	-1	known	missense	c.373	p.D125N	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894	41	0	0	43	9	17.31	-	-	-	T	99998046	C	T	99998046	3	4	978	1	0	0	0	0	1	0	0	0	311	913	32	2	771	2	ADH5	4	99998046	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4553108	99998046	91156230	102	77432										
SETD7	0	genome.wustl.edu	37	chr4	140444559	140444559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cattggtagaaatgcaagatGaagtcgacttatcaaagtgg	11	5	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	140444559	140444559	G	A	SNP	SETD7	ENST00000274031	human	ensembl	69_37n	-1	known	missense	c.593	p.S198L	1.000	pirsf_Hist-Lys_N-MeTrfase_SET	pfam_MORN,pfam_SET_dom,smart_SET_dom,pirsf_Hist-Lys_N-MeTrfase_SET,pfscan_SET_dom	-	no_errors	SETD7	HGNC	ENSG00000145391	19	0	0	17	7	29.17	-	-	-	A	140444559	G	A	140444559	3	1	978	1	0	0	0	0	1	0	0	0	14224	1294	45	2	523	2	SETD7	4	140444559	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	40446513	140444559	50709717	103	77433										
ABCE1	0	genome.wustl.edu	37	chr4	146031300	146031300	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgacttatttccgtggatctGaattacaaaattactttaca	5	7	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	146031300	146031300	G	A	SNP	ABCE1	ENST00000296577	human	ensembl	69_37n	1	known	missense	c.451	p.E151K	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163	30	0	0	29	8	21.62	-	-	-	A	146031300	G	A	146031300	3	1	978	1	0	0	0	0	1	0	0	0	64	1291	45	2	469	2	ABCE1	4	146031300	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5586741	146031300	45122976	104	77434										
PPID	0	genome.wustl.edu	37	chr4	159636499	159636499	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atctcccagttctgggatttGaaaaaagtatttccaatgtt	7	7	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	4	159636499	159636499	G	A	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	silent	c.702	p.F234	1.000	smart_TPR_repeat	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	33	0	0	35	8	18.6	-	-	-	A	159636499	G	A	159636499	2	1	978	1	0	0	0	0	0	0	0	1	12398	1281	45	2		2	PPID	4	159636499	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	13605199	159636499	31517777	105	77435										
ADCY2	0	genome.wustl.edu	37	chr5	7757647	7757647	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccgcccctggccacggatctCtctcacgatcatcaccacag	7	19	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	7757647	7757647	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	69_37n	1	known	missense	c.2042	p.S681F	0.995	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	45	0	0	52	8	13.33	-	-	-	T	7757647	C	T	7757647	3	4	978	1	0	0	0	0	1	0	0	0	294	913	32	2	2104	2	ADCY2	5	7757647	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		7757647	173157613	106	77436										
LMBRD2	0	genome.wustl.edu	37	chr5	36105264	36105264	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagttctatccggtccctttCagtcctgttattagccctgg	8	12	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	36105264	36105264	C	T	SNP	LMBRD2	ENST00000296603	human	ensembl	69_37n	-1	known	missense	c.1933	p.E645K	1.000	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD2	HGNC	ENSG00000164187	72	0	0	82	13	13.68	-	-	-	T	36105264	C	T	36105264	3	4	978	1	0	0	0	0	1	0	0	0	8899	835	29	2	162	2	LMBRD2	5	36105264	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	28347617	36105264	144809996	107	77437										
C9	0	genome.wustl.edu	37	chr5	39342213	39342213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catttgtctgagacaaggatCgcattgtgaccattcactcc	8	11	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	39342213	39342213	C	A	SNP	C9	ENST00000263408	human	ensembl	69_37n	-1	known	missense	c.163	p.D55Y	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C9	HGNC	ENSG00000113600	82	0	0	105	14	11.76	-	-	-	A	39342213	C	A	39342213	3	1	978	1	0	0	0	0	1	0	0	0	2468	884	31	3	1556	3	C9	5	39342213	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3236949	39342213	141573047	108	77438										
C6	0	genome.wustl.edu	37	chr5	41172441	41172441	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acagtgtttggcttcttcctCggttaaacctaggagatgaa	10	8	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	41172441	41172441	C	T	SNP	C6	ENST00000263413	human	ensembl	69_37n	-1	known	missense	c.1177	p.E393K	0.973	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal-type_dom,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C6	HGNC	ENSG00000039537	103	0	0	118	22	15.71	-	-	-	T	41172441	C	T	41172441	3	4	978	1	0	0	0	0	1	0	0	0	2336	893	31	1	1667	1	C6	5	41172441	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1830228	41172441	139742819	109	77439										
IPO11	0	genome.wustl.edu	37	chr5	61923315	61923315	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aatgtaaatcctgcataactAaaatcacaaacctattcctc	2	11	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	61923315	61923315	A	G	SNP	IPO11	ENST00000512177	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.855	-	-	-	no_errors	IPO11	HGNC	ENSG00000086200	23	0	0	17	5	22.73	-	-	-	G	61923315	A	G	61923315	1	3	978	0	1	0	0	0	0	0	0	0	7847	377	13	5		5	IPO11	5	61923315	RNA	SNP	A	TCGA-PE-A5DE-01A-11D-A27P-09	20750874	61923315	118991945	110	77440										
RNF180	0	genome.wustl.edu	37	chr5	63626151	63626151	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttctttactaaagaatatttGaaaataaaacaaagctttca	3	5	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	63626151	63626151	G	C	SNP	RNF180	ENST00000389100	human	ensembl	69_37n	1	known	missense	c.1497	p.L499F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197	38	0	0	58	12	16.9	-	-	-	C	63626151	G	C	63626151	3	2	978	1	0	0	0	0	1	0	0	0	13550	1281	45	2	1543	2	RNF180	5	63626151	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1702836	63626151	117289109	111	77441										
SLC30A5	0	genome.wustl.edu	37	chr5	68419223	68419223	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgagattgccaccagaatatGaaaaagaactacatattgct	7	7	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	68419223	68419223	G	A	SNP	SLC30A5	ENST00000396591	human	ensembl	69_37n	1	known	missense	c.1969	p.E657K	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A5	HGNC	ENSG00000145740	28	0	0	50	8	13.79	-	-	-	A	68419223	G	A	68419223	3	1	978	1	0	0	0	0	1	0	0	0	14647	1291	45	2	2111	2	SLC30A5	5	68419223	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4793072	68419223	112496037	112	77442										
ZNF366	0	genome.wustl.edu	37	chr5	71757044	71757044	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtggagggcgagggtgacttCttctgcagggtggttatagg	19	5	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	71757044	71757044	C	G	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.280	p.E94Q	0.139	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	89	0	0	107	13	10.83	-	-	-	G	71757044	C	G	71757044	3	3	978	1	0	0	0	0	1	0	0	0	17966	922	32	2	1970	2	ZNF366	5	71757044	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3337821	71757044	109158216	113	77443										
UTP15	0	genome.wustl.edu	37	chr5	72875844	72875844	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gatatgctttttgccaccatGagaaggaaggaaggcacttc	11	8	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	72875844	72875844	G	A	SNP	UTP15	ENST00000296792	human	ensembl	69_37n	1	known	missense	c.1482	p.M494I	1.000	NULL	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338	57	0	0	58	11	15.94	-	-	-	A	72875844	G	A	72875844	3	1	978	1	0	0	0	0	1	0	0	0	17194	1290	45	2	1528	2	UTP15	5	72875844	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1118800	72875844	108039416	114	77444										
MEGF10	0	genome.wustl.edu	37	chr5	126778807	126778807	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccccggatggaagggagcgaGatgtgatcaaggtaaatata	14	6	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	126778807	126778807	G	C	SNP	MEGF10	ENST00000274473	human	ensembl	69_37n	1	known	missense	c.2480	p.R827T	0.971	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	98	0	0	86	16	15.69	-	-	-	C	126778807	G	C	126778807	3	2	978	1	0	0	0	0	1	0	0	0	9531	942	33	2	2550	2	MEGF10	5	126778807	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	53902963	126778807	54136453	115	77445										
PPP2CA	0	genome.wustl.edu	37	chr5	133541618	133541618	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	taaaattgaaattaccttaaGagctacaagcagtgtaactg	7	6	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	133541618	133541618	G	A	SNP	PPP2CA	ENST00000481195	human	ensembl	69_37n	-1	known	missense	c.307	p.L103F	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CA	HGNC	ENSG00000113575	32	0	0	41	5	10.87	-	-	-	A	133541618	G	A	133541618	3	1	978	1	0	0	0	0	1	0	0	0	12457	942	33	2	646	2	PPP2CA	5	133541618	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6762811	133541618	47373642	116	77446										
KDM3B	0	genome.wustl.edu	37	chr5	137761226	137761226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggaactgtgctataatttccGatgtgaaagttcgggatttc	11	6	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	137761226	137761226	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	69_37n	1	known	missense	c.4366	p.D1456N	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	76	0	0	94	12	11.32	-	-	-	A	137761226	G	A	137761226	3	1	978	1	0	0	0	0	1	0	0	0	8181	1058	37	1	4432	1	KDM3B	5	137761226	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4219608	137761226	43154034	117	77447										
PCDHB1	0	genome.wustl.edu	37	chr5	140433360	140433360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcactggtaatagtgagtttCgctttcttaagcgttttatg	10	6	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	140433360	140433360	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	1	known	missense	c.2305	p.R769C	0.402	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	59	0	0	50	16	24.24	-	-	-	T	140433360	C	T	140433360	3	4	978	1	0	0	0	0	1	0	0	0	11607	884	31	1	2307	1	PCDHB1	5	140433360	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2672134	140433360	40481900	118	77448										
PCDHB11	0	genome.wustl.edu	37	chr5	140581362	140581362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cttctcccagccctacctgcCgctccctgaggcggcaccgg	10	20	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	140581362	140581362	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	69_37n	1	known	missense	c.2015	p.P672L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	178	0	0	149	32	17.68	-	-	-	T	140581362	C	T	140581362	3	4	978	1	0	0	0	0	1	0	0	0	11609	652	23	1	2017	1	PCDHB11	5	140581362	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	148002	140581362	40333898	119	77449										
PCDHGB4	0	genome.wustl.edu	37	chr5	140769580	140769580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggccatgattctggccattgCcttgcgcctgcgacgctcct	11	15	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	140769580	140769580	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	69_37n	1	known	missense	c.2129	p.A710V	0.054	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953	68	0	0	78	9	10.34	-	-	-	T	140769580	C	T	140769580	3	4	978	1	0	0	0	0	1	0	0	0	11638	739	26	4	2131	4	PCDHGB4	5	140769580	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	188218	140769580	40145680	120	77450										
PCDHGB7	0	genome.wustl.edu	37	chr5	140799815	140799815	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcattttaactcccagcgttGaagcagataagaagattctt	8	8	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	140799815	140799815	G	C	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	1	known	missense	c.2389	p.E797Q	0.034	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	42	0	0	64	11	14.67	-	-	-	C	140799815	G	C	140799815	3	2	978	1	0	0	0	0	1	0	0	0	11641	1291	45	2	2391	2	PCDHGB7	5	140799815	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	30235	140799815	40115445	121	77451										
SPINK1	0	genome.wustl.edu	37	chr5	147204248	147204248	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	caaggcccagatttttgaatGaggatagaagtctggcgttt	12	6	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	147204248	147204248	G	A	SNP	SPINK1	ENST00000296695	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	0.916	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal	pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,smart_Prot_inh_Kazal,prints_Prot_inh_Kazal-m	-	no_errors	SPINK1	HGNC	ENSG00000164266	12	0	0	17	4	19.05	-	-	-	A	147204248	G	A	147204248	2	1	978	1	0	0	0	0	0	0	0	1	15148	1277	45	2		2	SPINK1	5	147204248	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6404433	147204248	33711012	122	77452										
ZNF300	0	genome.wustl.edu	37	chr5	150275144	150275144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agaaaaggcctttccacattCagcacatatgtaaggtttct	7	9	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	150275144	150275144	C	G	SNP	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	missense	c.1705	p.E569Q	0.308	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	64	0	0	60	32	34.78	-	-	-	G	150275144	C	G	150275144	3	3	978	1	0	0	0	0	1	0	0	0	17927	835	29	2	161	2	ZNF300	5	150275144	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3070896	150275144	30640116	123	77453										
FAM71B	0	genome.wustl.edu	37	chr5	156592823	156592823	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcaagggaagcagtctcgtGagctctagagtcttgacggg	14	8	4	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	156592823	156592823	G	A	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	silent	c.357	p.L119	1.000	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	54	0	0	76	16	17.39	-	-	-	A	156592823	G	A	156592823	2	1	978	1	0	0	0	0	0	0	0	1	5653	1277	45	2		2	FAM71B	5	156592823	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6317679	156592823	24322437	124	77454										
NIPAL4	0	genome.wustl.edu	37	chr5	156887500	156887500	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agggccagcacgaggtggctCccacccagctttgaagatct	12	13	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	156887500	156887500	C	T	SNP	NIPAL4	ENST00000519946	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NIPAL4	HGNC	ENSG00000172548	45	0	0	51	9	15	-	-	-	T	156887500	C	T	156887500	1	4	978	0	1	0	0	0	0	0	0	0	10499	870	30	2		2	NIPAL4	5	156887500	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	294677	156887500	24027760	125	77455										
FAM153C	0	genome.wustl.edu	37	chr5	177434006	177434006	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggtcggaggccgccagtgtcGctgctgaagggcggaccagg	19	11	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	177434006	177434006	G	T	SNP	FAM153C	ENST00000508839	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	FAM153C	HGNC	ENSG00000204677	13	0	0	4	7	63.64	-	-	-	T	177434006	G	T	177434006	1	4	978	0	1	0	0	0	0	0	0	0	5502	1102	38	3		3	FAM153C	5	177434006	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	20546506	177434006	3481254	126	77456										
N4BP3	0	genome.wustl.edu	37	chr5	177548700	177548700	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccccaggcagctgtgagactGatgactgcaagagcaggggc	15	11	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	177548700	177548700	G	T	SNP	N4BP3	ENST00000274605	human	ensembl	69_37n	1	known	missense	c.1333	p.D445Y	0.698	pfam_Fez1	pfam_Fez1	-	no_errors	N4BP3	HGNC	ENSG00000145911	9	0	0	21	5	19.23	-	-	-	T	177548700	G	T	177548700	3	4	978	1	0	0	0	0	1	0	0	0	10185	1290	45	2	1347	2	N4BP3	5	177548700	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	114694	177548700	3366560	127	77457										
AGXT2L2	0	genome.wustl.edu	37	chr5	177649544	177649544	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gccaaagccaacctggatctCatctgcaacaaagacccctc	6	16	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	177649544	177649544	C	T	SNP	AGXT2L2	ENST00000308158	human	ensembl	69_37n	-1	known	missense	c.739	p.E247K	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2L2	HGNC	ENSG00000175309	48	0	0	72	9	10.98	-	-	-	T	177649544	C	T	177649544	3	4	978	1	0	0	0	0	1	0	0	0	407	835	29	2	633	2	AGXT2L2	5	177649544	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	100844	177649544	3265716	128	77458										
BTNL8	0	genome.wustl.edu	37	chr5	180377136	180377136	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cgggatgatgtggacaggagGaaggagtacgtgactttgtc	17	5	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	5	180377136	180377136	G	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	1	known	silent	c.1095	p.R365	0.018	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	45	0	0	36	11	23.4	-	-	-	A	180377136	G	A	180377136	2	1	978	1	0	0	0	0	0	0	0	1	1576	1165	41	2		2	BTNL8	5	180377136	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2727592	180377136	538124	129	77459										
HIST1H3B	0	genome.wustl.edu	37	chr6	26032115	26032115	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttccgaatcagcaactcggtCgacttttggtagcggcggat	12	10	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	26032115	26032115	C	A	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	silent	c.174	p.S58	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	75	0	0	87	19	17.92	-	-	-	A	26032115	C	A	26032115	2	1	978	1	0	0	0	0	0	0	0	1	7207	871	31	3		3	HIST1H3B	6	26032115	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		26032115	145082952	130	77460										
HIST1H2BG	0	genome.wustl.edu	37	chr6	26216590	26216590	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agacgcacggcggtctggatCtccctggaggtaatggtcga	15	10	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	26216590	26216590	C	T	SNP	HIST1H2BG	ENST00000244601	human	ensembl	69_37n	-1	known	silent	c.282	p.E94	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990	78	0	0	110	19	14.73	-	-	-	T	26216590	C	T	26216590	2	4	978	1	0	0	0	0	0	0	0	1	7197	912	32	2		2	HIST1H2BG	6	26216590	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	184475	26216590	144898477	131	77461										
BTN1A1	0	genome.wustl.edu	37	chr6	26502135	26502135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcagggaggatggaagctacGaagaagccctggtgcatctg	15	8	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	26502135	26502135	G	A	SNP	BTN1A1	ENST00000244513	human	ensembl	69_37n	1	known	missense	c.397	p.E133K	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	34	0	0	45	9	16.67	-	-	-	A	26502135	G	A	26502135	3	1	978	1	0	0	0	0	1	0	0	0	1568	1059	37	1	403	1	BTN1A1	6	26502135	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	285545	26502135	144612932	132	77462										
ABT1	0	genome.wustl.edu	37	chr6	26598833	26598833	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctttggagccccgccaccctCagagagcatggagggacctt	12	14	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	26598833	26598833	C	G	SNP	ABT1	ENST00000274849	human	ensembl	69_37n	1	known	nonsense	c.779	p.S260*	0.628	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109	28	0	0	35	7	16.67	-	-	-	G	26598833	C	G	26598833	4	3	978	1	0	0	0	0	0	1	0	0	101	838	29	2	789	2	ABT1	6	26598833	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	96698	26598833	144516234	133	77463										
HIST1H2AK	0	genome.wustl.edu	37	chr6	27806056	27806056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgggaactgaagacccgccCttgaagaacgggtcttagcc	12	12	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	27806056	27806056	C	T	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.62	p.R21K	0.339	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	61	0	0	74	9	10.84	-	-	-	T	27806056	C	T	27806056	3	4	978	1	0	0	0	0	1	0	0	0	7188	681	24	4	334	4	HIST1H2AK	6	27806056	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1207223	27806056	143309011	134	77464										
ZFP57	0	genome.wustl.edu	37	chr6	29644742	29644742	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcgcccacccatgggagcgtCttctgtacaggttcgattgg	12	12	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	29644742	29644742	C	G	SNP	ZFP57	ENST00000488757	human	ensembl	69_37n	-1	known	missense	c.39	p.K13N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	65	0	0	88	20	18.52	-	-	-	G	29644742	C	G	29644742	3	3	978	1	0	0	0	0	1	0	0	0	17747	912	32	2	1587	2	ZFP57	6	29644742	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1838686	29644742	141470325	135	77465										
TNXB	0	genome.wustl.edu	37	chr6	32023869	32023869	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggggaggatcctgtcactgtCagctcccccaggagcggctc	14	14	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	32023869	32023869	C	G	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.8226	p.L2742	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	35	0	0	42	7	14.29	-	-	-	G	32023869	C	G	32023869	2	3	978	1	0	0	0	0	0	0	0	1	16441	813	29	2		2	TNXB	6	32023869	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2379127	32023869	139091198	136	77466										
TNXB	0	genome.wustl.edu	37	chr6	32062954	32062954	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gagatgcatcctcatgccctCaatggttggcacctctgccc	9	15	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	32062954	32062954	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	missense	c.2257	p.E753K	0.882	smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	42	0	0	58	14	19.44	-	-	-	T	32062954	C	T	32062954	3	4	978	1	0	0	0	0	1	0	0	0	16441	835	29	2	12620	2	TNXB	6	32062954	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	39085	32062954	139052113	137	77467										
TAP1	0	genome.wustl.edu	37	chr6	32813494	32813494	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcagcctgctccaccaggctGaggtgctgggtgatgagaag	15	10	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	32813494	32813494	G	C	SNP	TAP1	ENST00000354258	human	ensembl	69_37n	-1	known	silent	c.2289	p.L763	0.905	smart_AAA+_ATPase,prints_ABC_B2,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_ABC_B2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394	53	0	0	78	14	15.22	-	-	-	C	32813494	G	C	32813494	2	2	978	1	0	0	0	0	0	0	0	1	15642	1277	45	2		2	TAP1	6	32813494	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	750540	32813494	138301573	138	77468										
VPS52	0	genome.wustl.edu	37	chr6	33235986	33235986	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tctcggatcttcgtcactgcCtagatgtggggaaccaaaca	10	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	33235986	33235986	C	G	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	splice_site	c.700-1	e8-1	1.000	-	-	-	no_errors	VPS52	HGNC	ENSG00000223501	27	0	0	44	5	10.2	-	-	-	G	33235986	C	G	33235986	5	3	978	1	0	0	0	0	0	0	1	0	17311	695	24	4	1524	4	VPS52	6	33235986	Splice_Site	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	422492	33235986	137879081	139	77469										
DAXX	0	genome.wustl.edu	37	chr6	33289225	33289225	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcccgagacaggaccctagaGaggatgttgcagaactccgc	13	12	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	33289225	33289225	G	C	SNP	DAXX	ENST00000266000	human	ensembl	69_37n	-1	known	silent	c.327	p.L109	0.999	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	22	0	0	38	8	17.39	-	-	-	C	33289225	G	C	33289225	2	2	978	1	0	0	0	0	0	0	0	1	4275	929	33	2		2	DAXX	6	33289225	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	53239	33289225	137825842	140	77470										
TULP1	0	genome.wustl.edu	37	chr6	35480457	35480457	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctccgggctcaggctttcttCttcatgcccactgagggtag	11	13	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	35480457	35480457	C	T	SNP	TULP1	ENST00000229771	human	ensembl	69_37n	-1	known	missense	c.58	p.E20K	1.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041	25	0	0	22	11	33.33	-	-	-	T	35480457	C	T	35480457	3	4	978	1	0	0	0	0	1	0	0	0	16870	922	32	2	1626	2	TULP1	6	35480457	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2191232	35480457	135634610	141	77471										
SLC35B2	0	genome.wustl.edu	37	chr6	44224149	44224149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggtctctgccgcctctgttCggggcgccaggggaacctca	14	14	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	44224149	44224149	C	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.290	p.R97Q	0.529	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	55	0	0	68	9	11.69	-	-	-	T	44224149	C	T	44224149	3	4	978	1	0	0	0	0	1	0	0	0	14665	884	31	1	1016	1	SLC35B2	6	44224149	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	8743692	44224149	126890918	142	77472										
SLC35A1	0	genome.wustl.edu	37	chr6	88221297	88221297	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaaccatttgcattaaactaGagccttaagtcaatctcaga	5	9	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	88221297	88221297	G	A	SNP	SLC35A1	ENST00000464978	human	ensembl	69_37n	1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC35A1	HGNC	ENSG00000164414	34	0	0	46	8	14.81	-	-	-	A	88221297	G	A	88221297	1	1	978	0	1	0	0	0	0	0	0	0	14659	957	33	2		2	SLC35A1	6	88221297	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	43997148	88221297	82893770	143	77473										
POPDC3	0	genome.wustl.edu	37	chr6	105609709	105609709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagatgataaatggctccttCggcctcttgcttccaggttg	10	10	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	105609709	105609709	C	T	SNP	POPDC3	ENST00000254765	human	ensembl	69_37n	-1	known	missense	c.76	p.E26K	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429	39	0	0	16	4	20	-	-	-	T	105609709	C	T	105609709	3	4	978	1	0	0	0	0	1	0	0	0	12330	893	31	1	811	1	POPDC3	6	105609709	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	17388412	105609709	65505358	144	77474										
AIM1	0	genome.wustl.edu	37	chr6	107016364	107016364	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tagggggcacacagtatgatCaaaatcacattatcctcaac	7	10	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	107016364	107016364	C	G	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	1	known	missense	c.5095	p.Q1699E	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	56	0	0	50	9	15.25	-	-	-	G	107016364	C	G	107016364	3	3	978	1	0	0	0	0	1	0	0	0	430	827	29	2	5173	2	AIM1	6	107016364	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1406655	107016364	64098703	145	77475										
TRDN	0	genome.wustl.edu	37	chr6	123580807	123580807	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atatttcagttttcttctttCctaggggaaagaaaaacaac	6	7	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	123580807	123580807	C	A	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.1832	p.G611V	0.080	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	60	0	0	39	15	27.78	-	-	-	A	123580807	C	A	123580807	3	1	978	1	0	0	0	0	1	0	0	0	16564	869	30	2	385	2	TRDN	6	123580807	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	16564443	123580807	47534260	146	77476										
CTAGE9	0	genome.wustl.edu	37	chr6	132031248	132031248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aggatcatctaagttagcacCattttcccattgactgttca	6	10	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	132031248	132031248	C	T	SNP	CTAGE9	ENST00000314099	human	ensembl	69_37n	-1	known	missense	c.910	p.G304S	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	154	0	0	107	34	24.11	-	-	-	T	132031248	C	T	132031248	3	4	978	1	0	0	0	0	1	0	0	0	4028	594	21	4	1427	4	CTAGE9	6	132031248	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	8450441	132031248	39083819	147	77477										
SASH1	0	genome.wustl.edu	37	chr6	148664318	148664318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agccgggtgctggcacatccGaggcgttctcccgactctgg	14	14	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	148664318	148664318	G	A	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.115	p.E39K	0.895	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	44	0	0	33	9	21.43	-	-	-	A	148664318	G	A	148664318	3	1	978	1	0	0	0	0	1	0	0	0	13935	1059	37	1	117	1	SASH1	6	148664318	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	16633070	148664318	22450749	148	77478										
SASH1	0	genome.wustl.edu	37	chr6	148865467	148865467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tctggagggccacagaaaagGacacgagtttgaaggaacac	13	8	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	148865467	148865467	G	A	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	1	known	missense	c.2861	p.G954E	0.998	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	24	0	0	28	6	17.65	-	-	-	A	148865467	G	A	148865467	3	1	978	1	0	0	0	0	1	0	0	0	13935	1174	41	2	2931	2	SASH1	6	148865467	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	201149	148865467	22249600	149	77479										
SYNE1	0	genome.wustl.edu	37	chr6	152576056	152576056	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagtctttctttcatctgatGacatcgttgattcactactg	6	9	5	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	152576056	152576056	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.19429	p.H6477Y	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	66	0	0	35	8	18.6	-	-	-	A	152576056	G	A	152576056	3	1	978	1	0	0	0	0	1	0	0	0	15537	1290	45	2	7209	2	SYNE1	6	152576056	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3710589	152576056	18539011	150	77480										
MAS1	0	genome.wustl.edu	37	chr6	160328584	160328584	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcctgagcttcctggtcttCacgcccctcatgctggtgtc	9	15	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	6	160328584	160328584	C	T	SNP	MAS1	ENST00000252660	human	ensembl	69_37n	1	known	silent	c.597	p.F199	0.912	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mas_TM,prints_7TM_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368	20	0	0	31	8	20.51	-	-	-	T	160328584	C	T	160328584	2	4	978	1	0	0	0	0	0	0	0	1	9391	825	29	2		2	MAS1	6	160328584	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7752528	160328584	10786483	151	77481										
AGR2	0	genome.wustl.edu	37	chr7	16834591	16834591	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tctgcaggttcgtaagcataGagacgatttgaatatcttcc	9	8	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	16834591	16834591	G	A	SNP	AGR2	ENST00000419572	human	ensembl	69_37n	-1	known	silent	c.507	p.L169	1.000	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	AGR2	HGNC	ENSG00000106541	68	0	0	69	13	15.85	-	-	-	A	16834591	G	A	16834591	2	1	978	1	0	0	0	0	0	0	0	1	395	929	33	2		2	AGR2	7	16834591	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		16834591	142304072	152	77482										
AEBP1	0	genome.wustl.edu	37	chr7	44151612	44151612	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acgcatccacctggtgccctCactgaaccctgatggctacg	9	16	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	44151612	44151612	C	T	SNP	AEBP1	ENST00000223357	human	ensembl	69_37n	1	known	missense	c.2000	p.S667L	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624	75	0	0	87	14	13.86	-	-	-	T	44151612	C	T	44151612	3	4	978	1	0	0	0	0	1	0	0	0	349	838	29	2	2062	2	AEBP1	7	44151612	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	27317021	44151612	114987051	153	77483										
ZNF479	0	genome.wustl.edu	37	chr7	57187652	57187652	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcttcacatttgtagggtttCtctccagtatgaattctctt	6	9	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	57187652	57187652	C	T	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	silent	c.1470	p.E490	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	62	0	0	52	6	10.34	-	-	-	T	57187652	C	T	57187652	2	4	978	1	0	0	0	0	0	0	0	1	18029	912	32	2		2	ZNF479	7	57187652	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	13036040	57187652	101951011	154	77484										
TPST1	0	genome.wustl.edu	37	chr7	65705509	65705509	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agcatgccatggaatgccatCaccggatagaggaacgtagc	12	10	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	65705509	65705509	C	T	SNP	TPST1	ENST00000304842	human	ensembl	69_37n	1	known	missense	c.97	p.H33Y	1.000	NULL	pfam_Sulfotransferase_dom	-	no_errors	TPST1	HGNC	ENSG00000169902	48	0	0	51	6	10.53	-	-	-	T	65705509	C	T	65705509	3	4	978	1	0	0	0	0	1	0	0	0	16523	826	29	2	99	2	TPST1	7	65705509	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	8517857	65705509	93433154	155	77485										
POM121	0	genome.wustl.edu	37	chr7	72400518	72400518	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcctcaattctcagagctcaGatgaccacttgaataagaga	8	10	3	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	72400518	72400518	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	1	known	missense	c.1144	p.D382N	0.992	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	34	0	0	33	13	28.26	-	-	-	A	72400518	G	A	72400518	3	1	978	1	0	0	0	0	1	0	0	0	12313	942	33	2	363	2	POM121	7	72400518	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6695009	72400518	86738145	156	77486										
TRIM73	0	genome.wustl.edu	37	chr7	75028334	75028334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cactcctactgcaagggctgCctggtttccctgtcctacca	8	16	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	75028334	75028334	C	T	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	1	known	silent	c.117	p.C39	0.996	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	54	0	0	50	8	13.79	-	-	-	T	75028334	C	T	75028334	2	4	978	1	0	0	0	0	0	0	0	1	16642	747	26	4		4	TRIM73	7	75028334	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2627816	75028334	84110329	157	77487										
ABCB1	0	genome.wustl.edu	37	chr7	87148737	87148737	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaatacatcattgcctgggtGaaggaaaatgtaattccaaa	8	6	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	87148737	87148737	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	silent	c.2832	p.F944	0.992	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	43	0	0	51	9	15	-	-	-	A	87148737	G	A	87148737	2	1	978	1	0	0	0	0	0	0	0	1	40	1281	45	2		2	ABCB1	7	87148737	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	12120403	87148737	71989926	158	77488										
PPP1R9A	0	genome.wustl.edu	37	chr7	94879487	94879487	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cacacagtgaatgagcatctCaaagagactcaaagccagta	8	10	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	94879487	94879487	C	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	1	known	silent	c.2250	p.L750	0.997	superfamily_Smac_DIABLO-like	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	44	0	0	36	5	12.2	-	-	-	G	94879487	C	G	94879487	2	3	978	1	0	0	0	0	0	0	0	1	12455	813	29	2		2	PPP1R9A	7	94879487	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7730750	94879487	64259176	159	77489										
DLX5	0	genome.wustl.edu	37	chr7	96653581	96653581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccttccccctgtccatgtacCtggctggttggtggcgcttg	12	14	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	96653581	96653581	C	T	SNP	DLX5	ENST00000222598	human	ensembl	69_37n	-1	known	missense	c.355	p.E119K	1.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880	83	0	0	86	17	16.5	-	-	-	T	96653581	C	T	96653581	3	4	978	1	0	0	0	0	1	0	0	0	4610	695	24	4	526	4	DLX5	7	96653581	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1774094	96653581	62485082	160	77490										
GPC2	0	genome.wustl.edu	37	chr7	99771588	99771588	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggacagccgatgagacgcatCagagcctggctgcagccttc	13	13	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	99771588	99771588	C	G	SNP	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	silent	c.762	p.L254	0.997	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	54	0	0	81	11	11.96	-	-	-	G	99771588	C	G	99771588	2	3	978	1	0	0	0	0	0	0	0	1	6648	813	29	2		2	GPC2	7	99771588	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3118007	99771588	59367075	161	77491										
MEPCE	0	genome.wustl.edu	37	chr7	100029166	100029166	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggaaggggacccgggggcaGagggtgaggaagggaccacc	21	8	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	100029166	100029166	G	A	SNP	MEPCE	ENST00000310512	human	ensembl	69_37n	1	known	missense	c.1525	p.E509K	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	28	0	0	44	5	10.2	-	-	-	A	100029166	G	A	100029166	3	1	978	1	0	0	0	0	1	0	0	0	9548	943	33	2	1527	2	MEPCE	7	100029166	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	257578	100029166	59109497	162	77492										
MUC17	0	genome.wustl.edu	37	chr7	100684537	100684537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcaactcctagtgaaggaagCactccattaacaagtatgcc	7	11	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	100684537	100684537	C	T	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	1	known	silent	c.9840	p.S3280	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	114	0	0	126	25	16.56	-	-	-	T	100684537	C	T	100684537	2	4	978	1	0	0	0	0	0	0	0	1	10046	709	25	4		4	MUC17	7	100684537	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	655371	100684537	58454126	163	77493										
FLNC	0	genome.wustl.edu	37	chr7	128483575	128483575	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcgaggttgtgcgggactttGagatcatagacaaccatgac	13	8	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	128483575	128483575	G	C	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	1	known	missense	c.2755	p.E919Q	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	13	0	0	22	7	24.14	-	-	-	C	128483575	G	C	128483575	3	2	978	1	0	0	0	0	1	0	0	0	5981	1291	45	2	2825	2	FLNC	7	128483575	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	27799038	128483575	30655088	164	77494										
MTPN	0	genome.wustl.edu	37	chr7	135661842	135661842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcccacatgaactccttgtCgcacatcactgcagcggggc	11	15	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	135661842	135661842	C	T	SNP	MTPN	ENST00000393085	human	ensembl	69_37n	-1	known	missense	c.7	p.D3N	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	MTPN	HGNC	ENSG00000105887	63	0	0	80	11	12.09	-	-	-	T	135661842	C	T	135661842	3	4	978	1	0	0	0	0	1	0	0	0	10029	884	31	1	365	1	MTPN	7	135661842	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7178267	135661842	23476821	165	77495										
DGKI	0	genome.wustl.edu	37	chr7	137075578	137075578	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttgatgggtagttacagtaGaattgtatggtacagggaaa	14	2	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	137075578	137075578	G	A	SNP	DGKI	ENST00000494390	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.804	-	-	-	no_errors	DGKI	HGNC	ENSG00000157680	20	0	0	33	7	17.5	-	-	-	A	137075578	G	A	137075578	1	1	978	0	1	0	0	0	0	0	0	0	4507	957	33	2		2	DGKI	7	137075578	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1413736	137075578	22063085	166	77496										
C7orf34	0	genome.wustl.edu	37	chr7	142636835	142636835	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaagatgggagccagacagaGaaaacgccctctgcaggtag	13	9	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	142636835	142636835	G	C	SNP	C7orf34	ENST00000409607	human	ensembl	69_37n	1	known	missense	c.192	p.E64D	0.000	NULL	NULL	-	no_errors	C7orf34	HGNC	ENSG00000165131	33	0	0	22	8	26.67	-	-	-	C	142636835	G	C	142636835	3	2	978	1	0	0	0	0	1	0	0	0	2412	933	33	2	194	2	C7orf34	7	142636835	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5561257	142636835	16501828	167	77497										
EPHA1	0	genome.wustl.edu	37	chr7	143096459	143096459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctctgctgggggcacgtgaGacaatggggtgtgtccatgt	17	8	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	143096459	143096459	G	C	SNP	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	missense	c.883	p.L295V	0.995	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	41	0	0	51	7	12.07	-	-	-	C	143096459	G	C	143096459	3	2	978	1	0	0	0	0	1	0	0	0	5202	942	33	2	2103	2	EPHA1	7	143096459	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	459624	143096459	16042204	168	77498										
GALNTL5	0	genome.wustl.edu	37	chr7	151699921	151699921	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccctgatagatgtcattgatGatagaactctggagtataag	10	6	2	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	151699921	151699921	G	A	SNP	GALNTL5	ENST00000392800	human	ensembl	69_37n	1	known	missense	c.781	p.D261N	0.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648	71	0	0	73	13	15.12	-	-	-	A	151699921	G	A	151699921	3	1	978	1	0	0	0	0	1	0	0	0	6274	1290	45	2	799	2	GALNTL5	7	151699921	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	8603462	151699921	7438742	169	77499										
EN2	0	genome.wustl.edu	37	chr7	155255355	155255355	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tacaaccactccaccacagcCaaggagggcaagtcggacag	10	14	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	7	155255355	155255355	C	T	SNP	EN2	ENST00000297375	human	ensembl	69_37n	1	known	silent	c.975	p.A325	0.998	pfam_Homeobox-engrailed_C-terminal	pfam_Homeodomain,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeodomain_engrailed,prints_Homeobox_metazoa	-	no_errors	EN2	HGNC	ENSG00000164778	53	0	0	40	6	13.04	-	-	-	T	155255355	C	T	155255355	2	4	978	1	0	0	0	0	0	0	0	1	5147	581	21	4		4	EN2	7	155255355	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3555434	155255355	3883308	170	77500										
TUSC3	0	genome.wustl.edu	37	chr8	15531278	15531278	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tatagtctttgctatgacttCtggccagatgtggaaccata	9	8	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	15531278	15531278	C	G	SNP	TUSC3	ENST00000351598	human	ensembl	69_37n	1	known	missense	c.731	p.S244C	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723	68	0	0	32	6	15.79	-	-	-	G	15531278	C	G	15531278	3	3	978	1	0	0	0	0	1	0	0	0	16875	913	32	2	753	2	TUSC3	8	15531278	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		15531278	130832744	171	77501										
ADRA1A	0	genome.wustl.edu	37	chr8	26721895	26721895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtacatgaccaggatgatggCcagaggcaggtagaaggagc	16	7	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	26721895	26721895	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	missense	c.592	p.A198T	0.989	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	48	0	0	32	20	38.46	-	-	-	T	26721895	C	T	26721895	3	4	978	1	0	0	0	0	1	0	0	0	334	739	26	4	1107	4	ADRA1A	8	26721895	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11190617	26721895	119642127	172	77502										
NRG1	0	genome.wustl.edu	37	chr8	32406297	32406297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaagggcaagaagaaggagcGaggctccggcaagaagccgg	18	8	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	32406297	32406297	G	A	SNP	NRG1	ENST00000338921	human	ensembl	69_37n	1	known	missense	c.53	p.R18Q	0.288	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EGF-like,pfscan_EG-like_dom,pfscan_Ig-like,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168	43	0	0	20	4	16.67	-	-	-	A	32406297	G	A	32406297	3	1	978	1	0	0	0	0	1	0	0	0	10720	1058	37	1	804	1	NRG1	8	32406297	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5684402	32406297	113957725	173	77503										
NPBWR1	0	genome.wustl.edu	37	chr8	53853333	53853333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gccgctggtcatcgctatctCctacttcatcaccagcctga	7	16	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	53853333	53853333	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	69_37n	1	known	missense	c.866	p.S289F	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Neuropept_W_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729	141	0	0	70	16	18.6	-	-	-	T	53853333	C	T	53853333	3	4	978	1	0	0	0	0	1	0	0	0	10640	855	30	2	868	2	NPBWR1	8	53853333	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	21447036	53853333	92510689	174	77504										
PREX2	0	genome.wustl.edu	37	chr8	68982077	68982077	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctattttacgtagggtgtaaGattatattgtcgtcttcata	8	5	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	68982077	68982077	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	1	known	missense	c.1451	p.R484K	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	84	0	0	55	13	19.12	-	-	-	A	68982077	G	A	68982077	3	1	978	1	0	0	0	0	1	0	0	0	12558	942	33	2	1501	2	PREX2	8	68982077	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	15128744	68982077	77381945	175	77505										
NCOA2	0	genome.wustl.edu	37	chr8	71068636	71068636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaaagagctggctaagggcGagggctccatctgatcagat	13	9	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	71068636	71068636	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	missense	c.1964	p.S655L	0.990	pfam_SRC-1,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	64	0	0	68	13	16.05	-	-	-	A	71068636	G	A	71068636	3	1	978	1	0	0	0	0	1	0	0	0	10301	1059	37	1	2482	1	NCOA2	8	71068636	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2086559	71068636	75295386	176	77506										
TRPA1	0	genome.wustl.edu	37	chr8	72948630	72948630	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aacaagggcagcacaaaaatGatgcccgtcgtgtagataat	10	8	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	72948630	72948630	G	T	SNP	TRPA1	ENST00000262209	human	ensembl	69_37n	-1	known	silent	c.2448	p.I816	0.782	pfam_Ion_trans_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	27	0	0	19	10	34.48	-	-	-	T	72948630	G	T	72948630	2	4	978	1	0	0	0	0	0	0	0	1	16673	1280	45	2		2	TRPA1	8	72948630	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1879994	72948630	73415392	177	77507										
NECAB1	0	genome.wustl.edu	37	chr8	91804137	91804137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggaagattcccaggagacatCgccgtcctccaacaactcct	8	15	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	91804137	91804137	C	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	1	known	missense	c.23	p.S8L	0.998	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	57	0	0	28	7	20	-	-	-	T	91804137	C	T	91804137	3	4	978	1	0	0	0	0	1	0	0	0	10376	893	31	1	25	1	NECAB1	8	91804137	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	18855507	91804137	54559885	178	77508										
RAD54B	0	genome.wustl.edu	37	chr8	95416366	95416366	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tttctgatgtggtcgaagatGatatacaaggtaaggatcaa	11	4	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	95416366	95416366	G	A	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	missense	c.883	p.H295Y	0.992	smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	54	0	0	47	9	16.07	-	-	-	A	95416366	G	A	95416366	3	1	978	1	0	0	0	0	1	0	0	0	13075	1290	45	2	1889	2	RAD54B	8	95416366	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3612229	95416366	50947656	179	77509										
VPS13B	0	genome.wustl.edu	37	chr8	100155253	100155253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaaaagtgaagatttgggaaCagttcaggagaagtccacca	12	6	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	100155253	100155253	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	1	known	missense	c.1703	p.T568I	0.002	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	63	0	0	43	12	21.82	-	-	-	T	100155253	C	T	100155253	3	4	978	1	0	0	0	0	1	0	0	0	17287	478	17	4	1791	4	VPS13B	8	100155253	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4738887	100155253	46208769	180	77510										
TAF2	0	genome.wustl.edu	37	chr8	120816164	120816164	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaaaacatgagcacctctctCtgccatacttccctctacac	4	16	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	120816164	120816164	C	T	SNP	TAF2	ENST00000378164	human	ensembl	69_37n	-1	known	missense	c.514	p.E172K	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	62	0	0	46	6	11.54	-	-	-	T	120816164	C	T	120816164	3	4	978	1	0	0	0	0	1	0	0	0	15616	922	32	2	3173	2	TAF2	8	120816164	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	20660911	120816164	25547858	181	77511										
ATAD2	0	genome.wustl.edu	37	chr8	124361560	124361560	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctaaagaggaattctctatCaaagcgaccaggccttcgta	9	10	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	124361560	124361560	C	G	SNP	ATAD2	ENST00000287394	human	ensembl	69_37n	-1	known	missense	c.1771	p.D591H	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802	26	0	0	37	8	17.78	-	-	-	G	124361560	C	G	124361560	3	3	978	1	0	0	0	0	1	0	0	0	1075	826	29	2	2461	2	ATAD2	8	124361560	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3545396	124361560	22002462	182	77512										
LYPD2	0	genome.wustl.edu	37	chr8	143833840	143833840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccgcaggcagccagcaccagCgccaggagcgccagccgcgt	14	18	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	143833840	143833840	C	T	SNP	LYPD2	ENST00000359228	human	ensembl	69_37n	-1	known	silent	c.30	p.A10	0.021	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD2	HGNC	ENSG00000197353	107	0	0	77	48	38.4	-	-	-	T	143833840	C	T	143833840	2	4	978	1	0	0	0	0	0	0	0	1	9177	755	27	1		1	LYPD2	8	143833840	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	19472280	143833840	2530182	183	77513										
ARHGAP39	0	genome.wustl.edu	37	chr8	145770835	145770835	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aggccctgcacgctccagccCttggtggccacctccagggc	12	18	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	145770835	145770835	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	69_37n	-1	known	silent	c.2319	p.K773	0.990	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799	32	0	0	47	12	20.34	-	-	-	T	145770835	C	T	145770835	2	4	978	1	0	0	0	0	0	0	0	1	886	680	24	4		4	ARHGAP39	8	145770835	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1936995	145770835	593187	184	77514										
ZNF16	0	genome.wustl.edu	37	chr8	146156997	146156997	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggaccctctggtgcttcctCaggtgtgcactctggctgaa	12	12	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	8	146156997	146156997	C	G	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	silent	c.1176	p.L392	0.240	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	41	0	0	40	6	13.04	-	-	-	G	146156997	C	G	146156997	2	3	978	1	0	0	0	0	0	0	0	1	17834	813	29	2		2	ZNF16	8	146156997	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	386162	146156997	207025	185	77515										
CBWD1	0	genome.wustl.edu	37	chr9	166518	166518	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagaaagaacacaaaatgaaGaaatgaatagggcacacaag	9	5	0	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	166518	166518	G	C	SNP	CBWD1	ENST00000487575	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785	65	0	0	106	16	13.11	-	-	-	C	166518	G	C	166518	1	2	978	0	1	0	0	0	0	0	0	0	2737	957	33	2		2	CBWD1	9	166518	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		166518	141046913	186	77516										
DMRT2	0	genome.wustl.edu	37	chr9	1057202	1057202	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaacaaaactctcggtgaatGaaccactgtcattttctgtt	7	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	1057202	1057202	G	A	SNP	DMRT2	ENST00000302441	human	ensembl	69_37n	1	known	missense	c.1615	p.E539K	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	21	0	0	32	7	17.95	-	-	-	A	1057202	G	A	1057202	3	1	978	1	0	0	0	0	1	0	0	0	4622	1291	45	2	1682	2	DMRT2	9	1057202	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	890684	1057202	140156229	187	77517										
GALT	0	genome.wustl.edu	37	chr9	34647847	34647847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtaaggtcatgtgcttccaCccctggtcggatgtaacgct	11	11	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	34647847	34647847	C	T	SNP	GALT	ENST00000473506	human	ensembl	69_37n	1	known	missense	c.347	p.T116I	1.000	NULL	pfam_GalP_Utransf_N,superfamily_HIT-like	-	no_errors	GALT	HGNC	ENSG00000213930	100	0	0	123	16	11.43	-	-	-	T	34647847	C	T	34647847	3	4	978	1	0	0	0	0	1	0	0	0	6280	506	18	4	414	4	GALT	9	34647847	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	33590645	34647847	106565584	188	77518										
GRHPR	0	genome.wustl.edu	37	chr9	37429743	37429743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctctaggccaggccattgctCggcgtctgaaaccattcggt	11	13	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	37429743	37429743	C	T	SNP	GRHPR	ENST00000377824	human	ensembl	69_37n	1	known	missense	c.508	p.R170W	0.997	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd,pfam_NADP_OxRdtase_F420	-	no_errors	GRHPR	HGNC	ENSG00000137106	45	0	0	39	7	15.22	-	-	-	T	37429743	C	T	37429743	3	4	978	1	0	0	0	0	1	0	0	0	6817	875	31	1	530	1	GRHPR	9	37429743	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2781896	37429743	103783688	189	77519										
PTAR1	0	genome.wustl.edu	37	chr9	72333321	72333321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aacctggcttgctccacgttCcgacaggtggacaatacttg	10	12	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	72333321	72333321	C	T	SNP	PTAR1	ENST00000415701	human	ensembl	69_37n	-1	novel	missense	c.442	p.E148K	0.995	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTAR1	HGNC	ENSG00000188647	81	0	0	131	15	10.27	-	-	-	T	72333321	C	T	72333321	3	4	978	1	0	0	0	0	1	0	0	0	12804	842	30	2	66	2	PTAR1	9	72333321	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	34903578	72333321	68880110	190	77520										
ANXA1	0	genome.wustl.edu	37	chr9	75778434	75778434	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtgtgaatgaagacttggctGattcagatgccagggtaagg	15	5	1	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	75778434	75778434	G	A	SNP	ANXA1	ENST00000257497	human	ensembl	69_37n	1	known	missense	c.598	p.D200N	1.000	superfamily_Annexin,prints_AnnexinI	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	77	0	0	81	14	14.74	-	-	-	A	75778434	G	A	75778434	3	1	978	1	0	0	0	0	1	0	0	0	713	1290	45	2	624	2	ANXA1	9	75778434	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3445113	75778434	65434997	191	77521										
PRUNE2	0	genome.wustl.edu	37	chr9	79438433	79438433	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atattccaagtcaaatgtatCacaaagaagcaaaggactat	6	7	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	79438433	79438433	C	G	SNP	PRUNE2	ENST00000492157	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRUNE2	HGNC	ENSG00000106772	37	0	0	25	9	26.47	-	-	-	G	79438433	C	G	79438433	1	3	978	0	1	0	0	0	0	0	0	0	12721	841	29	2		2	PRUNE2	9	79438433	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3659999	79438433	61774998	192	77522										
NAA35	0	genome.wustl.edu	37	chr9	88632435	88632435	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cgcccattgagccgagagatCacaatgagccaagcatatca	9	12	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	88632435	88632435	C	T	SNP	NAA35	ENST00000361671	human	ensembl	69_37n	1	known	silent	c.1728	p.I576	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040	76	0	0	90	23	20	-	-	-	T	88632435	C	T	88632435	2	4	978	1	0	0	0	0	0	0	0	1	10195	816	29	2		2	NAA35	9	88632435	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9194002	88632435	52580996	193	77523										
IARS	0	genome.wustl.edu	37	chr9	95013095	95013095	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	attctggtacatcaattcagTgagaaaaggtgtgtagggag	13	4	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	95013095	95013095	T	C	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	missense	c.2329	p.T777A	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Ile-tRNA-synt	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	47	0	0	32	14	30.43	-	-	-	C	95013095	T	C	95013095	3	2	978	1	0	0	0	0	1	0	0	0	7527	1696	59	5	1507	5	IARS	9	95013095	Missense_Mutation	SNP	T	TCGA-PE-A5DE-01A-11D-A27P-09	6380660	95013095	46200336	194	77524										
ANKS6	0	genome.wustl.edu	37	chr9	101536318	101536318	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aatggggggatgactgctttCagcttgtcactcgggagtct	14	8	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	101536318	101536318	C	T	SNP	ANKS6	ENST00000444472	human	ensembl	69_37n	-1	putative	missense	c.67	p.E23K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKS6	HGNC	ENSG00000165138	50	0	0	46	6	11.54	-	-	-	T	101536318	C	T	101536318	3	4	978	1	0	0	0	0	1	0	0	0	691	813	29	2	981	2	ANKS6	9	101536318	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	6523223	101536318	39677113	195	77525										
INVS	0	genome.wustl.edu	37	chr9	103055193	103055193	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccagcacctggtcccctctCtgggcagagtgtgaatattg	11	12	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	103055193	103055193	C	T	SNP	INVS	ENST00000262457	human	ensembl	69_37n	1	known	missense	c.2654	p.S885F	0.723	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509	91	0	0	84	10	10.64	-	-	-	T	103055193	C	T	103055193	3	4	978	1	0	0	0	0	1	0	0	0	7841	913	32	2	2704	2	INVS	9	103055193	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1518875	103055193	38158238	196	77526										
PAPPA	0	genome.wustl.edu	37	chr9	118950121	118950121	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaagatgatcataagaacccGacggtgacgcgcgagcaggt	14	9	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	118950121	118950121	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	1	known	silent	c.1104	p.P368	0.005	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	51	0	0	51	8	13.56	-	-	-	A	118950121	G	A	118950121	2	1	978	1	0	0	0	0	0	0	0	1	11505	1045	37	1		1	PAPPA	9	118950121	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	15894928	118950121	22263310	197	77527										
ZBTB26	0	genome.wustl.edu	37	chr9	125680889	125680889	+	Nonstop_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtgagcatgaagcccctactCaattcacacaagtactatca	6	12	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	125680889	125680889	C	G	SNP	ZBTB26	ENST00000373654	human	ensembl	69_37n	-1	known	nonstop	c.1325	p.*442S	0.997	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448	27	0	0	32	12	27.27	-	-	-	G	125680889	C	G	125680889	4	3	978	1	0	0	0	0	0	0	0	0	17629	837	29	2	4	2	ZBTB26	9	125680889	Nonstop_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	6730768	125680889	15532542	198	77528										
ZBTB26	0	genome.wustl.edu	37	chr9	125681055	125681055	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaggtcttgtacatttctctCattggcattatcaaagctgt	8	8	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	125681055	125681055	C	A	SNP	ZBTB26	ENST00000373654	human	ensembl	69_37n	-1	known	nonsense	c.1159	p.E387*	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448	28	0	0	52	7	11.86	-	-	-	A	125681055	C	A	125681055	4	1	978	1	0	0	0	0	0	1	0	0	17629	835	29	2	170	2	ZBTB26	9	125681055	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	166	125681055	15532376	199	77529										
RALGPS1	0	genome.wustl.edu	37	chr9	129796710	129796710	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	attcattctgtgcttcctagGaactagccagctgtggatgg	11	9	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	129796710	129796710	G	C	SNP	RALGPS1	ENST00000259351	human	ensembl	69_37n	1	known	missense	c.217	p.E73Q	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828	55	0	0	85	13	13.27	-	-	-	C	129796710	G	C	129796710	3	2	978	1	0	0	0	0	1	0	0	0	13100	1188	41	2	231	2	RALGPS1	9	129796710	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4115655	129796710	11416721	200	77530										
NUP188	0	genome.wustl.edu	37	chr9	131768563	131768563	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aactgcttctacctgctcatCtctcaggcgatgcggtacct	8	14	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	131768563	131768563	C	T	SNP	NUP188	ENST00000372577	human	ensembl	69_37n	1	known	silent	c.4989	p.I1663	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	67	0	0	103	12	10.43	-	-	-	T	131768563	C	T	131768563	2	4	978	1	0	0	0	0	0	0	0	1	10831	903	32	2		2	NUP188	9	131768563	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1971853	131768563	9444868	201	77531										
C9orf106	0	genome.wustl.edu	37	chr9	132084459	132084459	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagtgagacatctgaatcctCtgctctgtgaccctggcagc	10	12	3	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	132084459	132084459	C	T	SNP	C9orf106	ENST00000316786	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf106	HGNC	ENSG00000179082	31	0	0	31	5	13.89	-	-	-	T	132084459	C	T	132084459	1	4	978	0	1	0	0	0	0	0	0	0	2472	912	32	2		2	C9orf106	9	132084459	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	315896	132084459	9128972	202	77532										
GTF3C4	0	genome.wustl.edu	37	chr9	135553388	135553388	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctcaaaaacagaagttgctGagtgcaaggagaaattcgcc	11	8	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	135553388	135553388	G	C	SNP	GTF3C4	ENST00000372146	human	ensembl	69_37n	1	known	missense	c.382	p.E128Q	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484	47	0	0	54	8	12.9	-	-	-	C	135553388	G	C	135553388	3	2	978	1	0	0	0	0	1	0	0	0	6926	1291	45	2	388	2	GTF3C4	9	135553388	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3468929	135553388	5660043	203	77533										
DBH	0	genome.wustl.edu	37	chr9	136508598	136508598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acatggaagtcttccagtgcGcccccgagatggacagcgtc	12	13	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	136508598	136508598	G	A	SNP	DBH	ENST00000393056	human	ensembl	69_37n	1	known	missense	c.808	p.A270T	0.011	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	65	0	0	63	22	25.58	-	-	-	A	136508598	G	A	136508598	3	1	978	1	0	0	0	0	1	0	0	0	4282	1087	38	1	822	1	DBH	9	136508598	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	955210	136508598	4704833	204	77534										
OLFM1	0	genome.wustl.edu	37	chr9	138011559	138011559	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgaagacagagaccatcctCaagacccgcagcctggacta	9	14	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	138011559	138011559	C	G	SNP	OLFM1	ENST00000371793	human	ensembl	69_37n	1	known	silent	c.993	p.L331	0.999	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558	27	0	0	47	8	14.55	-	-	-	G	138011559	C	G	138011559	2	3	978	1	0	0	0	0	0	0	0	1	10925	813	29	2		2	OLFM1	9	138011559	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1502961	138011559	3201872	205	77535										
KCNT1	0	genome.wustl.edu	37	chr9	138669256	138669256	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agctgatcatcgtctcggcaGagacggccggcaatgggctg	15	11	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	138669256	138669256	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	69_37n	1	known	missense	c.2422	p.E808K	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT1	HGNC	ENSG00000107147	44	0	0	62	10	13.89	-	-	-	A	138669256	G	A	138669256	3	1	978	1	0	0	0	0	1	0	0	0	8145	943	33	2	2504	2	KCNT1	9	138669256	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	657697	138669256	2544175	206	77536										
C9orf172	0	genome.wustl.edu	37	chr9	139739806	139739806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccaggccctatccgtccgagGagctctcggggcccagtcca	12	17	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	9	139739806	139739806	G	A	SNP	C9orf172	ENST00000436881	human	ensembl	69_37n	1	known	missense	c.940	p.E314K	0.209	NULL	NULL	-	no_errors	C9orf172	HGNC	ENSG00000232434	47	0	0	73	9	10.84	-	-	-	A	139739806	G	A	139739806	3	1	978	1	0	0	0	0	1	0	0	0	2496	1175	41	2	942	2	C9orf172	9	139739806	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1070550	139739806	1473625	207	77537										
BEND7	0	genome.wustl.edu	37	chr10	13485197	13485197	+	RNA	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggttatcacacattacaaaGaaagtatatgaaactattca	5	6	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	13485197	13485197	G	C	SNP	BEND7	ENST00000465276	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	BEND7	HGNC	ENSG00000165626	30	0	0	36	9	20	-	-	-	C	13485197	G	C	13485197	1	2	978	0	1	0	0	0	0	0	0	0	1407	957	33	2		2	BEND7	10	13485197	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		13485197	122049550	208	77538										
NMT2	0	genome.wustl.edu	37	chr10	15145310	15145310	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttgcttcttggaaggattttCaaaatggctgcagctcctca	9	9	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	15145310	15145310	C	T	SNP	NMT2	ENST00000466201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NMT2	HGNC	ENSG00000152465	21	0	0	22	6	21.43	-	-	-	T	15145310	C	T	15145310	1	4	978	0	1	0	0	0	0	0	0	0	10576	841	29	2		2	NMT2	10	15145310	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1660113	15145310	120389437	209	77539										
SLC39A12	0	genome.wustl.edu	37	chr10	18284605	18284605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaaagcccagaagattcacaGgcagctgaaatgcctatagg	10	9	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	18284605	18284605	G	T	SNP	SLC39A12	ENST00000377369	human	ensembl	69_37n	1	known	missense	c.1554	p.Q518H	0.987	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482	35	0	0	28	4	12.5	-	-	-	T	18284605	G	T	18284605	3	4	978	1	0	0	0	0	1	0	0	0	14704	991	35	4	1588	4	SLC39A12	10	18284605	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3139295	18284605	117250142	210	77540										
DNA2	0	genome.wustl.edu	37	chr10	70179590	70179590	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atggaggttaggaaaactatGagtttggcttctgttacatt	11	4	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	70179590	70179590	G	C	SNP	DNA2	ENST00000440722	human	ensembl	69_37n	-1	putative	missense	c.721	p.H241D	0.799	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DNA2	HGNC	ENSG00000138346	69	0	0	53	9	14.52	-	-	-	C	70179590	G	C	70179590	3	2	978	1	0	0	0	0	1	0	0	0	4632	1277	45	2	441	2	DNA2	10	70179590	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	51894985	70179590	65355157	211	77541										
ECD	0	genome.wustl.edu	37	chr10	74899224	74899224	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgcagcagctggtccagctGatctggtgagagatctaacc	12	11	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	74899224	74899224	G	C	SNP	ECD	ENST00000430082	human	ensembl	69_37n	-1	known	missense	c.1363	p.Q455E	1.000	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882	104	0	0	83	16	16.16	-	-	-	C	74899224	G	C	74899224	3	2	978	1	0	0	0	0	1	0	0	0	4923	1299	45	2	686	2	ECD	10	74899224	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4719634	74899224	60635523	212	77542										
TSPAN14	0	genome.wustl.edu	37	chr10	82275795	82275795	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtgcccagcgaggggcagagGctgagaggagctgacgagca	19	9	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	82275795	82275795	G	T	SNP	TSPAN14	ENST00000265450	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN14	HGNC	ENSG00000108219	8	0	0	2	14	87.5	-	-	-	T	82275795	G	T	82275795	1	4	978	0	1	0	0	0	0	0	0	0	16734	1218	42	4		4	TSPAN14	10	82275795	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7376571	82275795	53258952	213	77543										
KIF20B	0	genome.wustl.edu	37	chr10	91518585	91518585	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgatatccagtaatgtacaGaaagataatgaaattgaaca	7	5	0	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	91518585	91518585	G	A	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	1	known	silent	c.4716	p.Q1572	0.967	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	31	0	0	28	4	12.5	-	-	-	A	91518585	G	A	91518585	2	1	978	1	0	0	0	0	0	0	0	1	8339	933	33	2		2	KIF20B	10	91518585	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	9242790	91518585	44016162	214	77544										
PCGF6	0	genome.wustl.edu	37	chr10	105108721	105108721	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cctttgcaaatggaacacaaGatgtatggggtcagctcaga	11	8	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	105108721	105108721	G	C	SNP	PCGF6	ENST00000369847	human	ensembl	69_37n	-1	known	missense	c.396	p.I132M	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	37	0	0	25	11	30.56	-	-	-	C	105108721	G	C	105108721	3	2	978	1	0	0	0	0	1	0	0	0	11651	932	33	2	692	2	PCGF6	10	105108721	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	13590136	105108721	30426026	215	77545										
COL17A1	0	genome.wustl.edu	37	chr10	105819932	105819932	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcccgctgtccttggtcatGatgagcagctccatctcctt	8	14	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	105819932	105819932	G	C	SNP	COL17A1	ENST00000353479	human	ensembl	69_37n	-1	known	missense	c.1086	p.I362M	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	81	0	0	70	12	14.63	-	-	-	C	105819932	G	C	105819932	3	2	978	1	0	0	0	0	1	0	0	0	3704	1280	45	2	3579	2	COL17A1	10	105819932	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	711211	105819932	29714815	216	77546										
XPNPEP1	0	genome.wustl.edu	37	chr10	111667567	111667567	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagtcacctttggaggcattCtgccgtctgcaacaacagga	10	11	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	111667567	111667567	C	T	SNP	XPNPEP1	ENST00000502935	human	ensembl	69_37n	-1	known	missense	c.128	p.R43K	0.189	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP1	HGNC	ENSG00000108039	57	0	0	28	10	26.32	-	-	-	T	111667567	C	T	111667567	3	4	978	1	0	0	0	0	1	0	0	0	17539	913	32	2	1948	2	XPNPEP1	10	111667567	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5847635	111667567	23867180	217	77547										
HSPA12A	0	genome.wustl.edu	37	chr10	118435994	118435994	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccgcagcatcccctgcgaggAccacttcacaaaatccacac	6	18	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	118435994	118435994	A	T	SNP	HSPA12A	ENST00000369209	human	ensembl	69_37n	-1	known	missense	c.1306	p.S436T	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868	39	0	0	31	14	29.79	-	-	-	T	118435994	A	T	118435994	3	4	978	1	0	0	0	0	1	0	0	0	7457	275	10	5	729	5	HSPA12A	10	118435994	Missense_Mutation	SNP	A	TCGA-PE-A5DE-01A-11D-A27P-09	6768427	118435994	17098753	218	77548										
FGFR2	0	genome.wustl.edu	37	chr10	123279672	123279672	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcttggaggatgggccggtGaggcgatcgctctggtggag	21	7	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	123279672	123279672	G	A	SNP	FGFR2	ENST00000457416	human	ensembl	69_37n	-1	known	missense	c.760	p.H254Y	1.000	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	76	0	0	56	13	18.84	-	-	-	A	123279672	G	A	123279672	3	1	978	1	0	0	0	0	1	0	0	0	5912	1290	45	2	2009	2	FGFR2	10	123279672	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4843678	123279672	12255075	219	77549										
CPXM2	0	genome.wustl.edu	37	chr10	125521468	125521468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccgtgtggcacaccctcctcCgggcgtctgtcatgaggcgg	14	15	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	125521468	125521468	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	69_37n	-1	known	missense	c.1697	p.R566Q	0.995	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898	83	0	0	57	8	12.31	-	-	-	T	125521468	C	T	125521468	3	4	978	1	0	0	0	0	1	0	0	0	3868	652	23	1	589	1	CPXM2	10	125521468	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2241796	125521468	10013279	220	77550										
BCCIP	0	genome.wustl.edu	37	chr10	127541804	127541804	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcatgactgttggaattgctCtgtcataataagtcagggat	10	6	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	10	127541804	127541804	C	G	SNP	BCCIP	ENST00000368759	human	ensembl	69_37n	1	known	missense	c.961	p.L321V	0.002	NULL	NULL	-	no_errors	BCCIP	HGNC	ENSG00000107949	30	0	0	23	15	39.47	-	-	-	G	127541804	C	G	127541804	3	3	978	1	0	0	0	0	1	0	0	0	1360	912	32	2	1195	2	BCCIP	10	127541804	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2020336	127541804	7992943	221	77551										
OR52I2	0	genome.wustl.edu	37	chr11	4608426	4608426	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcagctttagtgcttgtttCactcagatgttttttgtcca	7	8	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	4608426	4608426	C	T	SNP	OR52I2	ENST00000312614	human	ensembl	69_37n	1	known	silent	c.384	p.F128	0.348	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52I2	HGNC	ENSG00000226288	139	0	0	101	18	15.13	-	-	-	T	4608426	C	T	4608426	2	4	978	1	0	0	0	0	0	0	0	1	11194	825	29	2		2	OR52I2	11	4608426	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		4608426	130398090	222	77552										
OR51Q1	0	genome.wustl.edu	37	chr11	5444150	5444150	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctgagcgactccgtgccctCaataactgcctgtcccacat	8	16	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	5444150	5444150	C	G	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	1	known	silent	c.720	p.L240	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	61	0	0	57	10	14.93	-	-	-	G	5444150	C	G	5444150	2	3	978	1	0	0	0	0	0	0	0	1	11177	813	29	2		2	OR51Q1	11	5444150	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	835724	5444150	129562366	223	77553										
TRIM5	0	genome.wustl.edu	37	chr11	5686709	5686709	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcttgataaagacttgagaGaaaactgggaggaaccttgt	11	5	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	5686709	5686709	G	A	SNP	TRIM5	ENST00000492086	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM5	HGNC	ENSG00000132256	40	0	0	38	6	13.64	-	-	-	A	5686709	G	A	5686709	1	1	978	0	1	0	0	0	0	0	0	0	16621	957	33	2		2	TRIM5	11	5686709	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	242559	5686709	129319807	224	77554										
RRP8	0	genome.wustl.edu	37	chr11	6621412	6621412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agacatggctgaagctgcagGcctgaaagctgagccttggg	15	9	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	6621412	6621412	G	A	SNP	RRP8	ENST00000254605	human	ensembl	69_37n	-1	known	silent	c.1335	p.G445	1.000	pfam_Methyltransferase-rel	pfam_Methyltransferase-rel,pfam_Methyltransf_11	-	no_errors	RRP8	HGNC	ENSG00000132275	56	0	0	52	10	16.13	-	-	-	A	6621412	G	A	6621412	2	1	978	1	0	0	0	0	0	0	0	1	13776	1190	42	4		4	RRP8	11	6621412	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	934703	6621412	128385104	225	77555										
TPH1	0	genome.wustl.edu	37	chr11	18048072	18048072	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagggatctgaactgtgtctCacatattgagtgcagtgaaa	11	6	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	18048072	18048072	C	T	SNP	TPH1	ENST00000417164	human	ensembl	69_37n	-1	known	missense	c.571	p.E191K	1.000	NULL	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C	-	no_errors	TPH1	HGNC	ENSG00000129167	92	0	0	100	15	13.04	-	-	-	T	18048072	C	T	18048072	3	4	978	1	0	0	0	0	1	0	0	0	16497	813	29	2	586	2	TPH1	11	18048072	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11426660	18048072	116958444	226	77556										
SLC17A6	0	genome.wustl.edu	37	chr11	22396411	22396411	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	attctttcaactacgacagtGagaaagatcatgaattgtgg	9	6	3	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	22396411	22396411	G	A	SNP	SLC17A6	ENST00000263160	human	ensembl	69_37n	1	known	silent	c.1152	p.V384	0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664	56	0	0	44	6	12	-	-	-	A	22396411	G	A	22396411	2	1	978	1	0	0	0	0	0	0	0	1	14510	1277	45	2		2	SLC17A6	11	22396411	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4348339	22396411	112610105	227	77557										
FJX1	0	genome.wustl.edu	37	chr11	35641376	35641376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tctaccggcgccacgagcctCgcttccccgagctggccgcc	11	20	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	35641376	35641376	C	T	SNP	FJX1	ENST00000317811	human	ensembl	69_37n	1	known	missense	c.1192	p.R398C	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FJX1	HGNC	ENSG00000179431	17	0	0	12	6	33.33	-	-	-	T	35641376	C	T	35641376	3	4	978	1	0	0	0	0	1	0	0	0	5947	884	31	1	1194	1	FJX1	11	35641376	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	13244965	35641376	99365140	228	77558										
ACCSL	0	genome.wustl.edu	37	chr11	44069628	44069628	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cttcctgtgccctctggtcaGaggagaggccgggtccccag	14	14	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	44069628	44069628	G	C	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	1	known	missense	c.42	p.Q14H	0.074	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	20	0	0	27	9	25	-	-	-	C	44069628	G	C	44069628	3	2	978	1	0	0	0	0	1	0	0	0	134	933	33	2	44	2	ACCSL	11	44069628	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	8428252	44069628	90936888	229	77559										
OR5L1	0	genome.wustl.edu	37	chr11	55579224	55579224	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaggacaaagccatctccttCctagggtgcatggtgcaatt	10	10	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	55579224	55579224	C	T	SNP	OR5L1	ENST00000333973	human	ensembl	69_37n	1	known	silent	c.282	p.F94	0.000	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5L1	HGNC	ENSG00000186117	175	0	0	121	23	15.97	-	-	-	T	55579224	C	T	55579224	2	4	978	1	0	0	0	0	0	0	0	1	11243	854	30	2		2	OR5L1	11	55579224	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11509596	55579224	79427292	230	77560										
APLNR	0	genome.wustl.edu	37	chr11	57004110	57004110	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gccaggtagcggtcgaagctGaggccggtgaggcagaagac	18	9	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	57004110	57004110	G	C	SNP	APLNR	ENST00000257254	human	ensembl	69_37n	-1	known	silent	c.369	p.L123	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_APJ_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	APLNR	HGNC	ENSG00000134817	52	0	0	42	13	23.64	-	-	-	C	57004110	G	C	57004110	2	2	978	1	0	0	0	0	0	0	0	1	779	1277	45	2		2	APLNR	11	57004110	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1424886	57004110	78002406	231	77561										
CD5	0	genome.wustl.edu	37	chr11	60890436	60890436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggtggcaagcatcatcctggCcctggtgctcctggtggtgc	15	12	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	60890436	60890436	C	T	SNP	CD5	ENST00000347785	human	ensembl	69_37n	1	known	missense	c.1157	p.A386V	0.872	prints_Tcell_CD5	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	67	0	0	75	12	13.79	-	-	-	T	60890436	C	T	60890436	3	4	978	1	0	0	0	0	1	0	0	0	3050	739	26	4	1183	4	CD5	11	60890436	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3886326	60890436	74116080	232	77562										
DLG2	0	genome.wustl.edu	37	chr11	84027938	84027938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccctttgcccttggtgctcGtcttgtgggggcttttccgc	12	13	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	84027938	84027938	G	A	SNP	DLG2	ENST00000280241	human	ensembl	69_37n	-1	known	missense	c.251	p.T84M	0.168	pfam_MAGUK_PEST_N,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_Guanylate_kin,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG2	HGNC	ENSG00000150672	32	0	0	39	8	17.02	-	-	-	A	84027938	G	A	84027938	3	1	978	1	0	0	0	0	1	0	0	0	4591	1160	40	1		1	DLG2	11	84027938	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	23137502	84027938	50978578	233	77563										
FZD4	0	genome.wustl.edu	37	chr11	86662326	86662326	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagaccaaatccacatgcctGaagtgatgcccaccaacaaa	6	14	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	86662326	86662326	G	A	SNP	FZD4	ENST00000531380	human	ensembl	69_37n	-1	known	missense	c.1472	p.S491L	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804	54	0	0	50	10	16.67	-	-	-	A	86662326	G	A	86662326	3	1	978	1	0	0	0	0	1	0	0	0	6181	1294	45	2	145	2	FZD4	11	86662326	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2634388	86662326	48344190	234	77564										
ZNF259	0	genome.wustl.edu	37	chr11	116656232	116656232	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atccttcagtccacttacttGaagccccagcatctcttcct	4	16	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	116656232	116656232	G	A	SNP	ZNF259	ENST00000227322	human	ensembl	69_37n	-1	known	nonsense	c.703	p.Q235*	0.470	tigrfam_Znf_ZPR1	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	-	no_errors	ZNF259	HGNC	ENSG00000109917	87	0	0	97	13	11.82	-	-	-	A	116656232	G	A	116656232	4	1	978	1	0	0	0	0	0	1	0	0	17897	1299	45	2	712	2	ZNF259	11	116656232	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	29993906	116656232	18350284	235	77565										
C1QTNF5	0	genome.wustl.edu	37	chr11	119215632	119215632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcatggaaaccaaatccttCcacactgctgtcagagacga	9	12	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	119215632	119215632	C	T	SNP	C1QTNF5	ENST00000449574	human	ensembl	69_37n	-1	known	missense	c.724	p.E242K	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	Clone_based_vega_gene	ENSG00000235718	15	0	0	18	4	18.18	-	-	-	T	119215632	C	T	119215632	3	4	978	1	0	0	0	0	1	0	0	0	1985	864	30	2		2	C1QTNF5	11	119215632	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2559400	119215632	15790884	236	77566										
USP2	0	genome.wustl.edu	37	chr11	119228759	119228759	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcagtccattaatgtcacctCaggataacctcgctgggaag	10	11	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	119228759	119228759	C	T	SNP	USP2	ENST00000260187	human	ensembl	69_37n	-1	known	missense	c.1354	p.E452K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP2	HGNC	ENSG00000036672	73	0	0	84	20	19.23	-	-	-	T	119228759	C	T	119228759	3	4	978	1	0	0	0	0	1	0	0	0	17148	835	29	2	483	2	USP2	11	119228759	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	13127	119228759	15777757	237	77567										
HSPA8	0	genome.wustl.edu	37	chr11	122931861	122931861	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggtggggttcattgcaacttGattctttgcggcatcaccga	12	9	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	122931861	122931861	G	C	SNP	HSPA8	ENST00000534624	human	ensembl	69_37n	-1	known	missense	c.172	p.Q58E	1.000	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971	36	0	0	40	9	18.37	-	-	-	C	122931861	G	C	122931861	3	2	978	1	0	0	0	0	1	0	0	0	7469	1299	45	2	1800	2	HSPA8	11	122931861	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3703102	122931861	12074655	238	77568										
OR6X1	0	genome.wustl.edu	37	chr11	123624915	123624915	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagaactcggtggtgcccacGaagaagtggaagaaggcctg	15	8	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	123624915	123624915	G	A	SNP	OR6X1	ENST00000327930	human	ensembl	69_37n	-1	known	silent	c.312	p.F104	0.195	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931	82	0	0	94	16	14.55	-	-	-	A	123624915	G	A	123624915	2	1	978	1	0	0	0	0	0	0	0	1	11285	1049	37	1		1	OR6X1	11	123624915	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	693054	123624915	11381601	239	77569										
CCDC15	0	genome.wustl.edu	37	chr11	124857539	124857539	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aatatcaggaccagaattttCtacctaaggaccagaatttt	6	8	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	11	124857539	124857539	C	T	SNP	CCDC15	ENST00000344762	human	ensembl	69_37n	1	known	silent	c.1417	p.L473	0.006	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548	56	0	0	64	10	13.51	-	-	-	T	124857539	C	T	124857539	2	4	978	1	0	0	0	0	0	0	0	1	2809	912	32	2		2	CCDC15	11	124857539	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1232624	124857539	10148977	240	77570										
CDKN1B	0	genome.wustl.edu	37	chr12	12870831	12870831	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggagcggatggacgccaggCaggcggagcaccccaagccc	16	14	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	12870831	12870831	C	T	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	nonsense	c.58	p.Q20*	0.997	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	44	0	0	57	8	12.31	-	-	-	T	12870831	C	T	12870831	4	4	978	1	0	0	0	0	0	1	0	0	3188	711	25	4	60	4	CDKN1B	12	12870831	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		12870831	120981064	241	77571										
CDKN1B	0	genome.wustl.edu	37	chr12	12871194	12871194	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agactgatccgtcggacagcCagacggggttagcggagcaa	15	10	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	12871194	12871194	C	T	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	1	known	nonsense	c.421	p.Q141*	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	38	0	0	44	10	18.52	-	-	-	T	12871194	C	T	12871194	4	4	978	1	0	0	0	0	0	1	0	0	3188	595	21	4	423	4	CDKN1B	12	12871194	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	363	12871194	120980701	242	77572										
TMTC1	0	genome.wustl.edu	37	chr12	29812815	29812815	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaaattatttatactaacctCgtaagaatgtaaggcgaaaa	6	5	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	29812815	29812815	C	T	SNP	TMTC1	ENST00000381224	human	ensembl	69_37n	-1	known	silent	c.798	p.T266	0.997	pfam_DUF1736	pfam_DUF1736,pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	54	0	0	38	8	17.39	-	-	-	T	29812815	C	T	29812815	2	4	978	1	0	0	0	0	0	0	0	1	16355	899	31	1		1	TMTC1	12	29812815	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	16941621	29812815	104039080	243	77573										
ARID2	0	genome.wustl.edu	37	chr12	46240703	46240703	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atagtggaaatagatagtgaGaagtttgcttgtcagtggta	13	2	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	46240703	46240703	G	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	1	known	silent	c.1563	p.E521	1.000	pfam_DNA-bd_RFX	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	89	0	0	70	9	11.39	-	-	-	A	46240703	G	A	46240703	2	1	978	1	0	0	0	0	0	0	0	1	917	933	33	2		2	ARID2	12	46240703	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	16427888	46240703	87611192	244	77574										
TUBA1B	0	genome.wustl.edu	37	chr12	49523124	49523124	+	Silent	SNP	G	G	A													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcatcttccttgcctgtgatGagctgctcagggtggaagag							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	49523124	49523124	G	A	SNP	TUBA1B	ENST00000336023	human	ensembl	69_37n	-1	known	silent	c.276	p.L92	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416	90	0	0	97	24	19.83	-	-	-	A	49523124	G	A	49523124	2	1	978	1	0	0	0	0	0	0	0	1	16841	1277	45	2		2	TUBA1B	12	49523124	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3282421	49523124	84328771	245	77575	545	2								
TUBA1B	0	genome.wustl.edu	37	chr12	49523127	49523127	+	Silent	SNP	C	C	T													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcttccttgcctgtgatgagCtgctcagggtggaagagctg							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	49523127	49523127	C	T	SNP	TUBA1B	ENST00000336023	human	ensembl	69_37n	-1	known	silent	c.273	p.Q91	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416	89	0	0	92	23	20	-	-	-	T	49523127	C	T	49523127	2	4	978	1	0	0	0	0	0	0	0	1	16841	796	28	4		4	TUBA1B	12	49523127	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3	49523127	84328768	246	77576	545	2								
GPD1	0	genome.wustl.edu	37	chr12	50498439	50498439	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggtgaccatgtgggtatttGaggaagacattggaggcaaa	16	4	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	50498439	50498439	G	A	SNP	GPD1	ENST00000301149	human	ensembl	69_37n	1	known	missense	c.124	p.E42K	1.000	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588	25	0	0	31	4	11.43	-	-	-	A	50498439	G	A	50498439	3	1	978	1	0	0	0	0	1	0	0	0	6654	1291	45	2	130	2	GPD1	12	50498439	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	975312	50498439	83353456	247	77577										
PIP4K2C	0	genome.wustl.edu	37	chr12	57987892	57987892	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccaagatcaaggtcaacaatCaccttttccacaggtaagtg	7	11	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	57987892	57987892	C	T	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	1	known	missense	c.259	p.H87Y	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	49	0	0	60	14	18.92	-	-	-	T	57987892	C	T	57987892	3	4	978	1	0	0	0	0	1	0	0	0	12012	826	29	2	265	2	PIP4K2C	12	57987892	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7489453	57987892	75864003	248	77578										
AGAP2	0	genome.wustl.edu	37	chr12	58129195	58129195	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggctcaaagtccattcctggCtattgatcacagcctctgta	8	12	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	58129195	58129195	C	G	SNP	AGAP2	ENST00000547588	human	ensembl	69_37n	-1	known	missense	c.1184	p.S395T	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	38	0	0	51	11	17.46	-	-	-	G	58129195	C	G	58129195	3	3	978	1	0	0	0	0	1	0	0	0	368	797	28	4	2466	4	AGAP2	12	58129195	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	141303	58129195	75722700	249	77579										
USP15	0	genome.wustl.edu	37	chr12	62784666	62784666	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gatatgtcaaaatatctactGaaactgaagaaactgaagga	8	5	2	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	62784666	62784666	G	A	SNP	USP15	ENST00000280377	human	ensembl	69_37n	1	known	missense	c.1867	p.E623K	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	34	0	0	36	8	18.18	-	-	-	A	62784666	G	A	62784666	3	1	978	1	0	0	0	0	1	0	0	0	17143	1291	45	2	1834	2	USP15	12	62784666	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4655471	62784666	71067229	250	77580										
GNS	0	genome.wustl.edu	37	chr12	65113890	65113890	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttcatctttcctaaaagctCtgggtctatggttttagcaa	8	8	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	65113890	65113890	C	T	SNP	GNS	ENST00000258145	human	ensembl	69_37n	-1	known	missense	c.1492	p.E498K	1.000	superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677	63	0	0	99	12	10.81	-	-	-	T	65113890	C	T	65113890	3	4	978	1	0	0	0	0	1	0	0	0	6602	922	32	2	174	2	GNS	12	65113890	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2329224	65113890	68738005	251	77581										
PTPRR	0	genome.wustl.edu	37	chr12	71054753	71054753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccacaggccctcggccctggGaagcaagtctgtcttcttct	10	15	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	71054753	71054753	G	A	SNP	PTPRR	ENST00000283228	human	ensembl	69_37n	-1	known	missense	c.1733	p.S578F	0.718	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	67	0	0	51	10	16.39	-	-	-	A	71054753	G	A	71054753	3	1	978	1	0	0	0	0	1	0	0	0	12893	1174	41	2	252	2	PTPRR	12	71054753	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5940863	71054753	62797142	252	77582										
UTP20	0	genome.wustl.edu	37	chr12	101738384	101738384	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tttttgcagttaggagatatGagtttaagtgataatgccag	11	3	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	101738384	101738384	G	C	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	1	known	missense	c.4461	p.M1487I	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	26	0	0	24	4	14.29	-	-	-	C	101738384	G	C	101738384	3	2	978	1	0	0	0	0	1	0	0	0	17196	1290	45	2	4603	2	UTP20	12	101738384	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	30683631	101738384	32113511	253	77583										
DAO	0	genome.wustl.edu	37	chr12	109273444	109273444	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctccagtctctccttggcctCatctccccagcgtcctggaa	7	18	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	109273444	109273444	C	A	SNP	DAO	ENST00000548052	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DAO	HGNC	ENSG00000110887	66	0	0	93	12	11.43	-	-	-	A	109273444	C	A	109273444	1	1	978	0	1	0	0	0	0	0	0	0	4263	841	29	2		2	DAO	12	109273444	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	7535060	109273444	24578451	254	77584										
TRPV4	0	genome.wustl.edu	37	chr12	110224578	110224578	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccacggtgaccatctccccaGagcggaaggccttcctcagg	11	16	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	110224578	110224578	G	A	SNP	TRPV4	ENST00000261740	human	ensembl	69_37n	-1	known	missense	c.2273	p.S758F	0.996	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199	88	0	0	86	20	18.69	-	-	-	A	110224578	G	A	110224578	3	1	978	1	0	0	0	0	1	0	0	0	16694	942	33	2	354	2	TRPV4	12	110224578	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	951134	110224578	23627317	255	77585										
TRAFD1	0	genome.wustl.edu	37	chr12	112579878	112579879	+	Frame_Shift_Ins	INS	-	-	T													0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtatcctgaatgttggttggINStttttttttttcagttgaag							TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	112579878	112579879	-	T	INS	TRAFD1	ENST00000548277	human	ensembl	69_37n	1	putative	frame_shift_ins	c.11_12	p.F8fs	0.016:0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TRAFD1	HGNC	ENSG00000135148	9	0	0	3	3	50	-	-	-	T	112579879	-	T	112579878	7	5	978	1	0	1	1	0	0	0	0	0	16543	1276	44	0		0	TRAFD1	12	112579878	Frame_Shift_Ins	INS	-	TCGA-PE-A5DE-01A-11D-A27P-09	2355300	112579878	21272017	256	77586										
WDR66	0	genome.wustl.edu	37	chr12	122395061	122395061	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttaactggtacagtcacttGaaactgggcgccataagaac	10	9	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	122395061	122395061	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	silent	c.1617	p.L539	0.986	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	49	0	0	62	12	16.22	-	-	-	A	122395061	G	A	122395061	2	1	978	1	0	0	0	0	0	0	0	1	17414	1281	45	2		2	WDR66	12	122395061	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	9815183	122395061	11456834	257	77587										
WDR66	0	genome.wustl.edu	37	chr12	122396244	122396244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acagatgggaccaaacttgaGaagttatttgtagagcccaa	10	7	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	122396244	122396244	G	A	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	1	known	silent	c.1797	p.E599	0.986	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	48	0	0	67	9	11.84	-	-	-	A	122396244	G	A	122396244	2	1	978	1	0	0	0	0	0	0	0	1	17414	933	33	2		2	WDR66	12	122396244	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1183	122396244	11455651	258	77588										
RSRC2	0	genome.wustl.edu	37	chr12	123001881	123001881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctttccctgcttctggatctCgatttcttcctctctctgct	5	15	5	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	12	123001881	123001881	C	T	SNP	RSRC2	ENST00000526560	human	ensembl	69_37n	-1	putative	missense	c.176	p.R59Q	0.970	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	RSRC2	HGNC	ENSG00000111011	127	0	0	154	22	12.5	-	-	-	T	123001881	C	T	123001881	3	4	978	1	0	0	0	0	1	0	0	0	13801	871	31	1	833	1	RSRC2	12	123001881	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	605637	123001881	10850014	259	77589										
USPL1	0	genome.wustl.edu	37	chr13	31232835	31232835	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttatgggaatggtatttcttCagcaaaccatgaagacttgg	10	6	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	31232835	31232835	C	T	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.2621	p.S874L	0.023	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	28	0	0	51	10	16.39	-	-	-	T	31232835	C	T	31232835	3	4	978	1	0	0	0	0	1	0	0	0	17189	838	29	2	2651	2	USPL1	13	31232835	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		31232835	83937043	260	77590										
USPL1	0	genome.wustl.edu	37	chr13	31233336	31233336	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atgtgaagttcagccagactCtctgacaaataatgcctgcg	9	10	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	31233336	31233336	C	G	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	1	known	missense	c.3122	p.S1041C	0.006	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	25	0	0	21	12	36.36	-	-	-	G	31233336	C	G	31233336	3	3	978	1	0	0	0	0	1	0	0	0	17189	913	32	2	3152	2	USPL1	13	31233336	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	501	31233336	83936542	261	77591										
MAB21L1	0	genome.wustl.edu	37	chr13	36049917	36049917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgcgcgccgagaggtagccgGaggcggtaatgaattccacc	15	11	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	36049917	36049917	G	A	SNP	MAB21L1	ENST00000379919	human	ensembl	69_37n	-1	known	missense	c.359	p.S120F	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660	34	0	0	39	7	15.22	-	-	-	A	36049917	G	A	36049917	3	1	978	1	0	0	0	0	1	0	0	0	9208	1174	41	2	724	2	MAB21L1	13	36049917	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4816581	36049917	79119961	262	77592										
POSTN	0	genome.wustl.edu	37	chr13	38145546	38145546	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	attgtttcaccttctttaatCagtctgaattcaggttcacc	5	10	6	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	38145546	38145546	C	T	SNP	POSTN	ENST00000379747	human	ensembl	69_37n	-1	known	silent	c.2139	p.L713	0.494	pirsf_TGFb-ind_bIGH3/osteoblast_fac2	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	90	0	0	78	14	15.22	-	-	-	T	38145546	C	T	38145546	2	4	978	1	0	0	0	0	0	0	0	1	12333	813	29	2		2	POSTN	13	38145546	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2095629	38145546	77024332	263	77593										
TRPC4	0	genome.wustl.edu	37	chr13	38320505	38320505	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaccaagagttttattatctCataattatttgtatgggctg	7	5	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	38320505	38320505	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	missense	c.466	p.E156K	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	65	0	0	54	7	11.48	-	-	-	T	38320505	C	T	38320505	3	4	978	1	0	0	0	0	1	0	0	0	16676	835	29	2	2518	2	TRPC4	13	38320505	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	174959	38320505	76849373	264	77594										
ATP7B	0	genome.wustl.edu	37	chr13	52531744	52531744	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agggcttctgaggttttgctCtaggaaataaccagaatgtg	12	6	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	52531744	52531744	C	G	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	splice_site	c.2356-1	e9-1	1.000	-	-	-	no_errors	ATP7B	HGNC	ENSG00000123191	43	0	0	41	5	10.87	-	-	-	G	52531744	C	G	52531744	5	3	978	1	0	0	0	0	0	0	1	0	1195	927	32	2	2094	2	ATP7B	13	52531744	Splice_Site	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	14211239	52531744	62638134	265	77595										
TBC1D4	0	genome.wustl.edu	37	chr13	75930355	75930355	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggctctggagactcccggcaGataaagccaaagtgatccac	11	12	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	75930355	75930355	G	A	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	silent	c.1203	p.I401	1.000	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	39	0	0	21	3	12.5	-	-	-	A	75930355	G	A	75930355	2	1	978	1	0	0	0	0	0	0	0	1	15717	932	33	2		2	TBC1D4	13	75930355	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	23398611	75930355	39239523	266	77596										
SLITRK1	0	genome.wustl.edu	37	chr13	84453559	84453559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggggttggggtcttagtctGagagcgagtgagagccacag	18	6	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	84453559	84453559	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.2084	p.S695L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	40	0	0	28	4	12.5	-	-	-	A	84453559	G	A	84453559	3	1	978	1	0	0	0	0	1	0	0	0	14831	1294	45	2	10	2	SLITRK1	13	84453559	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	8523204	84453559	30716319	267	77597										
PCCA	0	genome.wustl.edu	37	chr13	101182391	101182391	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagctggagacacagttggaGaaggggatctgctcgtggag	17	6	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	13	101182391	101182391	G	A	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	1	known	missense	c.2158	p.E720K	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	54	0	0	48	6	11.11	-	-	-	A	101182391	G	A	101182391	3	1	978	1	0	0	0	0	1	0	0	0	11577	943	33	2	2252	2	PCCA	13	101182391	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	16728832	101182391	13987487	268	77598										
SLC7A8	0	genome.wustl.edu	37	chr14	23607216	23607216	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atccaggccatgactcctagGagcttctctccaaaagtctg	8	13	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	23607216	23607216	G	C	SNP	SLC7A8	ENST00000316902	human	ensembl	69_37n	-1	known	silent	c.930	p.L310	0.993	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A8	HGNC	ENSG00000092068	25	0	0	16	6	27.27	-	-	-	C	23607216	G	C	23607216	2	2	978	1	0	0	0	0	0	0	0	1	14793	1161	41	2		2	SLC7A8	14	23607216	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		23607216	83742324	269	77599										
PRPF39	0	genome.wustl.edu	37	chr14	45564611	45564611	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atgtgaatgcatctacagaaGaaactgaaatggcaagtgct	10	6	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	45564611	45564611	G	C	SNP	PRPF39	ENST00000355765	human	ensembl	69_37n	1	known	missense	c.169	p.E57Q	1.000	NULL	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246	28	0	0	25	6	19.35	-	-	-	C	45564611	G	C	45564611	3	2	978	1	0	0	0	0	1	0	0	0	12650	943	33	2	171	2	PRPF39	14	45564611	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	21957395	45564611	61784929	270	77600										
MDGA2	0	genome.wustl.edu	37	chr14	47324259	47324259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aattgggtatatattaacatGagcctcattccatctttgtc	6	8	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	47324259	47324259	G	A	SNP	MDGA2	ENST00000399232	human	ensembl	69_37n	-1	known	missense	c.2851	p.H951Y	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA2	HGNC	ENSG00000139915	51	0	0	48	7	12.73	-	-	-	A	47324259	G	A	47324259	3	1	978	1	0	0	0	0	1	0	0	0	9478	1290	45	2	238	2	MDGA2	14	47324259	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1759648	47324259	60025281	271	77601										
KIAA0586	0	genome.wustl.edu	37	chr14	58934473	58934473	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gacaaacccaaagtaatagtGataccatgccacctgctgga	8	11	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	58934473	58934473	G	A	SNP	KIAA0586	ENST00000556134	human	ensembl	69_37n	1	known	missense	c.2230	p.D744N	1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578	41	0	0	26	5	16.13	-	-	-	A	58934473	G	A	58934473	3	1	978	1	0	0	0	0	1	0	0	0	8238	1290	45	2	2105	2	KIAA0586	14	58934473	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	11610214	58934473	48415067	272	77602										
HIF1A	0	genome.wustl.edu	37	chr14	62162435	62162435	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctggacttgcctttccttctCttctccgcgtgtggagggag	12	12	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	62162435	62162435	C	T	SNP	HIF1A	ENST00000553999	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.082	-	-	-	no_errors	HIF1A	HGNC	ENSG00000100644	25	0	0	48	7	12.73	-	-	-	T	62162435	C	T	62162435	1	4	978	0	1	0	0	0	0	0	0	0	7154	928	32	2		2	HIF1A	14	62162435	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3227962	62162435	45187105	273	77603										
RGS6	0	genome.wustl.edu	37	chr14	72961968	72961968	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctttgtgggacatagagatGaggtaaaaaatgttttaagg	13	2	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	72961968	72961968	G	A	SNP	RGS6	ENST00000553525	human	ensembl	69_37n	1	known	missense	c.963	p.M321I	1.000	NULL	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS6	HGNC	ENSG00000182732	112	0	0	105	16	13.22	-	-	-	A	72961968	G	A	72961968	3	1	978	1	0	0	0	0	1	0	0	0	13393	1290	45	2	1009	2	RGS6	14	72961968	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	10799533	72961968	34387572	274	77604										
YLPM1	0	genome.wustl.edu	37	chr14	75265994	75265994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aacgggatattccatctcttCcacctttaccgcccctccca	4	18	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	75265994	75265994	C	T	SNP	YLPM1	ENST00000325680	human	ensembl	69_37n	1	known	missense	c.3994	p.P1332S	1.000	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	23	0	0	36	7	15.91	-	-	-	T	75265994	C	T	75265994	3	4	978	1	0	0	0	0	1	0	0	0	17583	855	30	2	4012	2	YLPM1	14	75265994	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2304026	75265994	32083546	275	77605										
ALKBH1	0	genome.wustl.edu	37	chr14	78140451	78140451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cccttctggatttggaaggaCacgagggactgcgtggttca	14	9	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	78140451	78140451	C	T	SNP	ALKBH1	ENST00000216489	human	ensembl	69_37n	-1	known	missense	c.874	p.V292I	0.997	NULL	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601	37	0	0	31	10	24.39	-	-	-	T	78140451	C	T	78140451	3	4	978	1	0	0	0	0	1	0	0	0	526	478	17	4	299	4	ALKBH1	14	78140451	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2874457	78140451	29209089	276	77606										
ADCK1	0	genome.wustl.edu	37	chr14	78365553	78365553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gatttcctcaatgaagggagGaatgctgagaaggtgtccca	13	7	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	78365553	78365553	G	T	SNP	ADCK1	ENST00000238561	human	ensembl	69_37n	1	known	missense	c.693	p.R231S	1.000	pfam_UbiB_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK1	HGNC	ENSG00000063761	168	0	0	189	37	16.37	-	-	-	T	78365553	G	T	78365553	3	4	978	1	0	0	0	0	1	0	0	0	288	1165	41	2	711	2	ADCK1	14	78365553	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	225102	78365553	28983987	277	77607										
C14orf177	0	genome.wustl.edu	37	chr14	99182494	99182494	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aggcccatgatcagccgtggGagccacgggaatcaattgct	13	11	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	99182494	99182494	G	A	SNP	C14orf177	ENST00000546029	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	C14orf177	HGNC	ENSG00000176605	23	0	0	26	7	21.21	-	-	-	A	99182494	G	A	99182494	1	1	978	0	1	0	0	0	0	0	0	0	1772	1189	41	2		2	C14orf177	14	99182494	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	20816941	99182494	8167046	278	77608										
CDC42BPB	0	genome.wustl.edu	37	chr14	103452869	103452869	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catgatccaaagtcagccagGcggatatgaccattcacgtc	9	12	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	103452869	103452869	G	C	SNP	CDC42BPB	ENST00000361246	human	ensembl	69_37n	-1	known	silent	c.645	p.R215	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,prints_DAG/PE-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	66	0	0	54	26	32.5	-	-	-	C	103452869	G	C	103452869	2	2	978	1	0	0	0	0	0	0	0	1	3102	1190	42	4		4	CDC42BPB	14	103452869	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4270375	103452869	3896671	279	77609										
BAG5	0	genome.wustl.edu	37	chr14	104027051	104027051	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acagattttggttaaagtgtGataccttgctttccgcaagg	10	7	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	104027051	104027051	G	A	SNP	BAG5	ENST00000337322	human	ensembl	69_37n	-1	known	missense	c.574	p.H192Y	0.991	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG5	HGNC	ENSG00000166170	61	0	0	74	14	15.91	-	-	-	A	104027051	G	A	104027051	3	1	978	1	0	0	0	0	1	0	0	0	1294	1290	45	2	896	2	BAG5	14	104027051	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	574182	104027051	3322489	280	77610										
KIAA0284	0	genome.wustl.edu	37	chr14	105355912	105355912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctctgaggaggagtacggctCccgccacggctcccccaaac	11	17	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	14	105355912	105355912	C	T	SNP	KIAA0284	ENST00000453495	human	ensembl	69_37n	1	known	missense	c.3803	p.S1268F	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	KIAA0284	HGNC	ENSG00000099814	93	0	0	103	22	17.6	-	-	-	T	105355912	C	T	105355912	3	4	978	1	0	0	0	0	1	0	0	0	8218	870	30	2		2	KIAA0284	14	105355912	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1328861	105355912	1993628	281	77611										
FAM189A1	0	genome.wustl.edu	37	chr15	29488713	29488713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccccgaggttgctgcagccgGacgactggtgctgcagctca	14	14	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	29488713	29488713	G	A	SNP	FAM189A1	ENST00000261275	human	ensembl	69_37n	-1	known	missense	c.443	p.S148F	0.060	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189A1	HGNC	ENSG00000104059	41	0	0	34	9	20.93	-	-	-	A	29488713	G	A	29488713	3	1	978	1	0	0	0	0	1	0	0	0	5557	1174	41	2	1208	2	FAM189A1	15	29488713	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		29488713	73042679	282	77612										
PLCB2	0	genome.wustl.edu	37	chr15	40590496	40590496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcgtcagggggtttccccttCcagcagtctagctccacgca	10	15	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	40590496	40590496	C	A	SNP	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	missense	c.1083	p.W361C	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	60	0	0	67	13	16.25	-	-	-	A	40590496	C	A	40590496	3	1	978	1	0	0	0	0	1	0	0	0	12102	856	30	2	2562	2	PLCB2	15	40590496	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11101783	40590496	61940896	283	77613										
RAD51	0	genome.wustl.edu	37	chr15	41023451	41023451	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcactgctccctggggttctCtacaggcctcttcctgttgt	10	14	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	41023451	41023451	C	G	SNP	RAD51	ENST00000530766	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RAD51	HGNC	ENSG00000051180	20	0	0	29	7	19.44	-	-	-	G	41023451	C	G	41023451	1	3	978	0	1	0	0	0	0	0	0	0	13068	928	32	2		2	RAD51	15	41023451	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	432955	41023451	61507941	284	77614										
MFAP1	0	genome.wustl.edu	37	chr15	44106742	44106742	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcgaggctccatctcatcttCactgtctgtgtactcttcat	7	13	6	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	44106742	44106742	C	T	SNP	MFAP1	ENST00000267812	human	ensembl	69_37n	-1	known	missense	c.574	p.E192K	1.000	pfam_MFAP1_C	pfam_MFAP1_C	-	no_errors	MFAP1	HGNC	ENSG00000140259	52	0	0	56	14	20	-	-	-	T	44106742	C	T	44106742	3	4	978	1	0	0	0	0	1	0	0	0	9584	835	29	2	769	2	MFAP1	15	44106742	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3083291	44106742	58424650	285	77615										
MFAP1	0	genome.wustl.edu	37	chr15	44106757	44106757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcttcactgtctgtgtactCttcatactcagactctgatt	5	11	7	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	44106757	44106757	C	G	SNP	MFAP1	ENST00000267812	human	ensembl	69_37n	-1	known	missense	c.559	p.E187Q	1.000	pfam_MFAP1_C	pfam_MFAP1_C	-	no_errors	MFAP1	HGNC	ENSG00000140259	53	0	0	48	12	19.67	-	-	-	G	44106757	C	G	44106757	3	3	978	1	0	0	0	0	1	0	0	0	9584	922	32	2	784	2	MFAP1	15	44106757	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	15	44106757	58424635	286	77616										
DUOX2	0	genome.wustl.edu	37	chr15	45386382	45386382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtggtgcatgaagtgggctCggtcctgcctgttgacgagc	16	9	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	45386382	45386382	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.4613	p.R1538Q	0.989	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	73	0	0	79	11	12.22	-	-	-	T	45386382	C	T	45386382	3	4	978	1	0	0	0	0	1	0	0	0	4836	884	31	1	37	1	DUOX2	15	45386382	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1279625	45386382	57145010	287	77617										
DUOX1	0	genome.wustl.edu	37	chr15	45444113	45444113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctgttcactgaggcgcaccGagagaagttccaacgcagct	12	12	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	45444113	45444113	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	1	known	missense	c.3056	p.R1019Q	0.952	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	48	0	0	41	5	10.87	-	-	-	A	45444113	G	A	45444113	3	1	978	1	0	0	0	0	1	0	0	0	4835	1058	37	1	3146	1	DUOX1	15	45444113	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	57731	45444113	57087279	288	77618										
SLC30A4	0	genome.wustl.edu	37	chr15	45783004	45783004	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catagttcatatggatagttCtttgcacagcttcatataag	7	7	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	45783004	45783004	C	G	SNP	SLC30A4	ENST00000261867	human	ensembl	69_37n	-1	known	missense	c.614	p.R205T	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154	37	0	0	41	6	12.77	-	-	-	G	45783004	C	G	45783004	3	3	978	1	0	0	0	0	1	0	0	0	14646	913	32	2	695	2	SLC30A4	15	45783004	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	338891	45783004	56748388	289	77619										
DYX1C1	0	genome.wustl.edu	37	chr15	55722912	55722912	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aattacattccgaatcttctCagcatcaatttgtacaattt	3	9	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	55722912	55722912	C	T	SNP	DYX1C1	ENST00000321149	human	ensembl	69_37n	-1	known	missense	c.1219	p.E407K	1.000	NULL	pfam_TPR-1,pfam_CS_domain,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS-like_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061	68	0	0	62	10	13.89	-	-	-	T	55722912	C	T	55722912	3	4	978	1	0	0	0	0	1	0	0	0	4897	835	29	2	150	2	DYX1C1	15	55722912	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9939908	55722912	46808480	290	77620										
VPS13C	0	genome.wustl.edu	37	chr15	62274718	62274718	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgttgctgatgttatttgctCaagatccaatcccttatttg	7	8	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	62274718	62274718	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.1969	p.E657Q	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	90	0	0	94	11	10.48	-	-	-	G	62274718	C	G	62274718	3	3	978	1	0	0	0	0	1	0	0	0	17288	835	29	2	9580	2	VPS13C	15	62274718	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	6551806	62274718	40256674	291	77621										
MAP2K1	0	genome.wustl.edu	37	chr15	66781598	66781598	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgttcagtctggaatttcaaGattttgtgaataaatggtaa	9	3	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	66781598	66781598	G	C	SNP	MAP2K1	ENST00000307102	human	ensembl	69_37n	1	known	missense	c.1006	p.D336H	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032	35	0	0	33	7	17.5	-	-	-	C	66781598	G	C	66781598	3	2	978	1	0	0	0	0	1	0	0	0	9307	942	33	2	1040	2	MAP2K1	15	66781598	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4506880	66781598	35749794	292	77622										
RASGRF1	0	genome.wustl.edu	37	chr15	79382571	79382571	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gacgctcgcctcacctgtttCtccagcggctccttggccga	10	17	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	79382571	79382571	C	G	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	missense	c.270	p.E90D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	86	0	0	99	20	16.81	-	-	-	G	79382571	C	G	79382571	3	3	978	1	0	0	0	0	1	0	0	0	13155	912	32	2	3663	2	RASGRF1	15	79382571	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	12600973	79382571	23148821	293	77623										
AKAP13	0	genome.wustl.edu	37	chr15	86064806	86064806	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cattggagaccattgctcctGgtaagtatttgaatgggatc	11	7	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	86064806	86064806	G	C	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	1	known	missense	c.181	p.G61R	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	55	0	0	48	10	17.24	-	-	-	C	86064806	G	C	86064806	3	2	978	1	0	0	0	0	1	0	0	0	449	1362	47	4	187	4	AKAP13	15	86064806	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6682235	86064806	16466586	294	77624										
AGBL1	0	genome.wustl.edu	37	chr15	87097660	87097660	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agctgcagctttctcgtggaGaaatctcgagcttccacggc	11	12	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	15	87097660	87097660	G	A	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	1	known	silent	c.2748	p.E916	0.998	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	44	0	0	40	6	13.04	-	-	-	A	87097660	G	A	87097660	2	1	978	1	0	0	0	0	0	0	0	1	375	933	33	2		2	AGBL1	15	87097660	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1032854	87097660	15433732	295	77625										
NME4	0	genome.wustl.edu	37	chr16	449629	449629	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cattatctctcgctgcaggtCtgggaagggtacaatgtcgt	12	9	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	449629	449629	C	T	SNP	NME4	ENST00000444498	human	ensembl	69_37n	1	known	silent	c.330	p.V110	1.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME4	HGNC	ENSG00000103202	40	0	0	72	16	18.18	-	-	-	T	449629	C	T	449629	2	4	978	1	0	0	0	0	0	0	0	1	10565	900	32	2		2	NME4	16	449629	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		449629	89905124	296	77626										
STUB1	0	genome.wustl.edu	37	chr16	732207	732207	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgtgtggcaagatcagctttGagctgatgcgggagccgtgc	16	8	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	732207	732207	G	C	SNP	STUB1	ENST00000219548	human	ensembl	69_37n	1	known	missense	c.712	p.E238Q	1.000	pfam_Ubox_domain,smart_Ubox_domain	pfam_Ubox_domain,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266	74	0	0	96	23	19.33	-	-	-	C	732207	G	C	732207	3	2	978	1	0	0	0	0	1	0	0	0	15426	1291	45	2	734	2	STUB1	16	732207	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	282578	732207	89622546	297	77627										
HAGHL	0	genome.wustl.edu	37	chr16	777579	777579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcatcgaggagctcacgcgcGaggcggtggccgtggacgtg	18	11	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	777579	777579	G	C	SNP	HAGHL	ENST00000341413	human	ensembl	69_37n	1	known	missense	c.70	p.E24Q	0.326	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	HAGHL	HGNC	ENSG00000103253	119	0	0	138	27	16.36	-	-	-	C	777579	G	C	777579	3	2	978	1	0	0	0	0	1	0	0	0	6997	1059	37	3	72	3	HAGHL	16	777579	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	45372	777579	89577174	298	77628										
RPL3L	0	genome.wustl.edu	37	chr16	2004125	2004125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gaagcccaggtgtccgtgccGaggggcggaaaacttccggt	16	11	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	2004125	2004125	G	A	SNP	RPL3L	ENST00000268661	human	ensembl	69_37n	-1	known	missense	c.28	p.R10W	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	42	0	0	78	20	20.41	-	-	-	A	2004125	G	A	2004125	3	1	978	1	0	0	0	0	1	0	0	0	13680	1057	37	1	1231	1	RPL3L	16	2004125	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1226546	2004125	88350628	299	77629										
TFAP4	0	genome.wustl.edu	37	chr16	4322736	4322736	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	accttctgagtgggcaccatGaaatactccatagcgatcgg	10	11	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	4322736	4322736	G	C	SNP	TFAP4	ENST00000204517	human	ensembl	69_37n	-1	known	missense	c.12	p.F4L	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFAP4	HGNC	ENSG00000090447	80	0	0	85	12	12.37	-	-	-	C	4322736	G	C	4322736	3	2	978	1	0	0	0	0	1	0	0	0	15887	1281	45	2	1032	2	TFAP4	16	4322736	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2318611	4322736	86032017	300	77630										
GRIN2A	0	genome.wustl.edu	37	chr16	10273974	10273974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtccgtgtcgtccccaaacaCgaggccgtggatgcgtgccc	13	15	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	10273974	10273974	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.295	p.V99M	1.000	NULL	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	73	0	0	102	18	15	-	-	-	T	10273974	C	T	10273974	3	4	978	1	0	0	0	0	1	0	0	0	6830	536	19	1	4147	1	GRIN2A	16	10273974	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5951238	10273974	80080779	301	77631										
SEPHS2	0	genome.wustl.edu	37	chr16	30456500	30456500	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttttcgcgttcctcctcactCatactctggctgacgctgag	8	14	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	30456500	30456500	C	G	SNP	SEPHS2	ENST00000542752	human	ensembl	69_37n	-1	known	missense	c.378	p.M126I	0.997	pfam_AIR_synth,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C,pfam_AIR_synth,superfamily_AIR_synth_C,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918	57	0	0	93	19	16.96	-	-	-	G	30456500	C	G	30456500	3	3	978	1	0	0	0	0	1	0	0	0	14143	826	29	2	801	2	SEPHS2	16	30456500	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	20182526	30456500	59898253	302	77632										
ZNF768	0	genome.wustl.edu	37	chr16	30537313	30537313	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaatggtatctcttcgacttCatagtccccactgccttctt	5	13	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	30537313	30537313	C	A	SNP	ZNF768	ENST00000380412	human	ensembl	69_37n	-1	known	nonsense	c.148	p.E50*	1.000	NULL	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957	30	0	0	49	8	14.04	-	-	-	A	30537313	C	A	30537313	4	1	978	1	0	0	0	0	0	1	0	0	18235	835	29	2	1478	2	ZNF768	16	30537313	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	80813	30537313	59817440	303	77633										
CDH1	0	genome.wustl.edu	37	chr16	68845587	68845587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atctccttgaactcttccagGaacctctgtgatggaggtca	9	11	4	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	68845587	68845587	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	1	known	missense	c.833	p.G278V	0.997	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	55	0	0	43	24	35.82	-	-	-	T	68845587	G	T	68845587	3	4	978	1	0	0	0	0	1	0	0	0	3124	1188	41	2	859	2	CDH1	16	68845587	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	38308274	68845587	21509166	304	77634										
FUK	0	genome.wustl.edu	37	chr16	70508500	70508500	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atcctgatccgccaggctgtGatgtcagcccagcactttgt	10	13	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	70508500	70508500	G	A	SNP	FUK	ENST00000378912	human	ensembl	69_37n	1	known	silent	c.2154	p.V718	1.000	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	65	0	0	63	14	17.95	-	-	-	A	70508500	G	A	70508500	2	1	978	1	0	0	0	0	0	0	0	1	6145	1277	45	2		2	FUK	16	70508500	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1662913	70508500	19846253	305	77635										
PLCG2	0	genome.wustl.edu	37	chr16	81934351	81934351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagtgctgaccagctgccctCgcccagccagctgcgggaga	13	16	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	81934351	81934351	C	T	SNP	PLCG2	ENST00000359376	human	ensembl	69_37n	1	known	missense	c.1328	p.S443L	0.998	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_Ca-dep,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCG2	HGNC	ENSG00000197943	69	0	0	67	9	11.84	-	-	-	T	81934351	C	T	81934351	3	4	978	1	0	0	0	0	1	0	0	0	12110	893	31	1	1378	1	PLCG2	16	81934351	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11425851	81934351	8420402	306	77636										
SNAI3	0	genome.wustl.edu	37	chr16	88747983	88747983	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcttcctcgatccgtggcagGaggggcagggagatgcaggc	18	10	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	88747983	88747983	G	C	SNP	SNAI3	ENST00000332281	human	ensembl	69_37n	-1	known	silent	c.216	p.L72	0.867	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669	43	0	0	61	24	28.24	-	-	-	C	88747983	G	C	88747983	2	2	978	1	0	0	0	0	0	0	0	1	14917	1161	41	2		2	SNAI3	16	88747983	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6813632	88747983	1606770	307	77637										
SNAI3	0	genome.wustl.edu	37	chr16	88748011	88748011	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggagatgcaggcgacggccGaggagcggtcccagggctgg	21	10	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	16	88748011	88748011	G	C	SNP	SNAI3	ENST00000332281	human	ensembl	69_37n	-1	known	missense	c.188	p.S63W	0.195	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669	38	0	0	35	21	37.5	-	-	-	C	88748011	G	C	88748011	3	2	978	1	0	0	0	0	1	0	0	0	14917	1059	37	3	698	3	SNAI3	16	88748011	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	28	88748011	1606742	308	77638										
ZNF232	0	genome.wustl.edu	37	chr17	5012814	5012814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	caggatggtcaagaattgttCcagcaccaggaactccagga	11	10	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	5012814	5012814	C	T	SNP	ZNF232	ENST00000250076	human	ensembl	69_37n	-1	known	missense	c.373	p.E125K	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF232	HGNC	ENSG00000167840	48	0	0	46	11	19.3	-	-	-	T	5012814	C	T	5012814	3	4	978	1	0	0	0	0	1	0	0	0	17881	864	30	2	973	2	ZNF232	17	5012814	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		5012814	76182396	309	77639										
NLRP1	0	genome.wustl.edu	37	chr17	5487160	5487160	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctctggctgagcgggtgtctCacccgaagagctcctggagt	14	12	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	5487160	5487160	C	T	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.118	p.E40K	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	47	0	0	53	8	13.11	-	-	-	T	5487160	C	T	5487160	3	4	978	1	0	0	0	0	1	0	0	0	10543	835	29	2	4446	2	NLRP1	17	5487160	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	474346	5487160	75708050	310	77640										
CD68	0	genome.wustl.edu	37	chr17	7483208	7483208	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cggtgacacccacggttacaGagagcactggaacaaccagc	11	13	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	7483208	7483208	G	A	SNP	CD68	ENST00000380498	human	ensembl	69_37n	1	known	splice_site	c.50-1	e2-1	0.243	-	-	-	no_errors	CD68	HGNC	ENSG00000129226	60	0	0	80	11	11.96	-	-	-	A	7483208	G	A	7483208	5	1	978	1	0	0	0	0	0	0	1	0	3059	956	33	2	136	2	CD68	17	7483208	Splice_Site	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1996048	7483208	73712002	311	77641										
TP53	0	genome.wustl.edu	37	chr17	7578423	7578423	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagcgcctcacaacctccgtCatgtgctgtgactgcttgta	9	14	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	7578423	7578423	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.507	p.M169I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	22	0	0	28	9	24.32	-	-	-	T	7578423	C	T	7578423	3	4	978	1	0	0	0	0	1	0	0	0	16477	826	29	2	791	2	TP53	17	7578423	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	95215	7578423	73616787	312	77642										
ALOXE3	0	genome.wustl.edu	37	chr17	8012650	8012650	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tagatgaggccttgcctcccGatggacgtgacctgaggaca	13	11	0	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	8012650	8012650	G	A	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	silent	c.1800	p.I600	0.987	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	71	0	0	66	18	21.43	-	-	-	A	8012650	G	A	8012650	2	1	978	1	0	0	0	0	0	0	0	1	542	1048	37	1		1	ALOXE3	17	8012650	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	434227	8012650	73182560	313	77643										
RANGRF	0	genome.wustl.edu	37	chr17	8193159	8193159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaggtcatctcttggccccGaaaatctgtcacctgcaccc	7	16	4	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	8193159	8193159	G	A	SNP	RANGRF	ENST00000226105	human	ensembl	69_37n	1	known	missense	c.466	p.E156K	0.953	superfamily_Mog1/PsbP/DUF1795_a/b/a-sand	pfam_Mog1,superfamily_Mog1/PsbP/DUF1795_a/b/a-sand	-	no_errors	RANGRF	HGNC	ENSG00000108961	27	0	0	31	10	24.39	-	-	-	A	8193159	G	A	8193159	3	1	978	1	0	0	0	0	1	0	0	0	13117	1059	37	1	572	1	RANGRF	17	8193159	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	180509	8193159	73002051	314	77644										
MYH10	0	genome.wustl.edu	37	chr17	8395802	8395802	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctcttcggcatagcgagcaGagatgctcttctcttctgct	10	12	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	8395802	8395802	G	C	SNP	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	missense	c.4454	p.S1485C	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	35	0	0	37	5	11.9	-	-	-	C	8395802	G	C	8395802	3	2	978	1	0	0	0	0	1	0	0	0	10102	942	33	2	1579	2	MYH10	17	8395802	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	202643	8395802	72799408	315	77645										
MYH4	0	genome.wustl.edu	37	chr17	10355546	10355546	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcttcttccagcctctcactGatctcctccagctcccggga	7	18	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	10355546	10355546	G	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.3450	p.I1150	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	69	0	0	73	12	13.95	-	-	-	A	10355546	G	A	10355546	2	1	978	1	0	0	0	0	0	0	0	1	10109	1280	45	2		2	MYH4	17	10355546	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1959744	10355546	70839664	316	77646										
TRPV2	0	genome.wustl.edu	37	chr17	16326933	16326933	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtgatgatctcggacaactCagctgagaacattgcactgg	11	9	2	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	16326933	16326933	C	G	SNP	TRPV2	ENST00000338560	human	ensembl	69_37n	1	known	nonsense	c.776	p.S259*	0.998	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	75	0	0	68	13	16.05	-	-	-	G	16326933	C	G	16326933	4	3	978	1	0	0	0	0	0	1	0	0	16692	838	29	2	790	2	TRPV2	17	16326933	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5971387	16326933	64868277	317	77647										
NT5M	0	genome.wustl.edu	37	chr17	17250283	17250283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctggactgtgcttcgggctcCtctgtggggctctgacctca	13	13	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	17250283	17250283	C	T	SNP	NT5M	ENST00000446264	human	ensembl	69_37n	1	novel	silent	c.705	p.S235	0.000	NULL	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309	41	0	0	51	7	12.07	-	-	-	T	17250283	C	T	17250283	2	4	978	1	0	0	0	0	0	0	0	1	10767	696	24	4		4	NT5M	17	17250283	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	923350	17250283	63944927	318	77648										
KIAA0100	0	genome.wustl.edu	37	chr17	26966443	26966443	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tagtgaatgatgcaagtgttCagaactagggaggctgagag	15	4	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	26966443	26966443	C	G	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.1119	p.L373	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	56	0	0	65	21	24.42	-	-	-	G	26966443	C	G	26966443	2	3	978	1	0	0	0	0	0	0	0	1	8206	813	29	2		2	KIAA0100	17	26966443	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9716160	26966443	54228767	319	77649										
MYO18A	0	genome.wustl.edu	37	chr17	27401804	27401804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgggctatgcgttagtctccGtcagcttggcctctgtgtcg	13	11	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	27401804	27401804	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.6149	p.T2050M	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	79	0	0	78	13	14.29	-	-	-	A	27401804	G	A	27401804	3	1	978	1	0	0	0	0	1	0	0	0	10137	1145	40	1	19	1	MYO18A	17	27401804	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	435361	27401804	53793406	320	77650										
GPR179	0	genome.wustl.edu	37	chr17	36485104	36485104	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcccaaactccctgaacactCtgagcttcctggggcctgaa	9	15	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	36485104	36485104	C	T	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.4348	p.E1450K	0.004	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	46	0	0	46	8	14.81	-	-	-	T	36485104	C	T	36485104	3	4	978	1	0	0	0	0	1	0	0	0	6724	922	32	2	2759	2	GPR179	17	36485104	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9083300	36485104	44710106	321	77651										
PSMD3	0	genome.wustl.edu	37	chr17	38146170	38146170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaatgagtgggccaggtacCtctactacacaggtgagcag	12	10	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	38146170	38146170	C	T	SNP	PSMD3	ENST00000264639	human	ensembl	69_37n	1	known	missense	c.865	p.L289F	1.000	smart_PAM	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344	36	0	0	34	8	19.05	-	-	-	T	38146170	C	T	38146170	3	4	978	1	0	0	0	0	1	0	0	0	12779	681	24	4	883	4	PSMD3	17	38146170	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1661066	38146170	43049040	322	77652										
KRT25	0	genome.wustl.edu	37	chr17	38911249	38911249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catgcacactgtccaggtagGatgccaggcggtcattgagg	14	10	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	38911249	38911249	G	C	SNP	KRT25	ENST00000312150	human	ensembl	69_37n	-1	known	missense	c.275	p.S92C	0.960	pfam_F	pfam_F,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897	119	0	0	86	15	14.85	-	-	-	C	38911249	G	C	38911249	3	2	978	1	0	0	0	0	1	0	0	0	8515	1174	41	2	1109	2	KRT25	17	38911249	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	765079	38911249	42283961	323	77653										
KRT36	0	genome.wustl.edu	37	chr17	39645670	39645670	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccctcaccttctgctggaaAtcttcgatggtcttgaagta	8	11	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	39645670	39645670	A	G	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	silent	c.447	p.D149	0.065	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	73	0	0	67	10	12.99	-	-	-	G	39645670	A	G	39645670	2	3	978	1	0	0	0	0	0	0	0	1	8526	98	4	5		5	KRT36	17	39645670	Silent	SNP	A	TCGA-PE-A5DE-01A-11D-A27P-09	734421	39645670	41549540	324	77654										
HSPB9	0	genome.wustl.edu	37	chr17	40275312	40275312	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggaccgtccccgagactcggGagcctcggctctaaggcttc	13	15	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	40275312	40275312	G	T	SNP	HSPB9	ENST00000355067	human	ensembl	69_37n	1	known	silent	c.444	p.G148	0.000	NULL	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	-	no_errors	HSPB9	HGNC	ENSG00000197723	22	0	0	27	7	20.59	-	-	-	T	40275312	G	T	40275312	2	4	978	1	0	0	0	0	0	0	0	1	7478	1161	41	2		2	HSPB9	17	40275312	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	629642	40275312	40919898	325	77655										
BRCA1	0	genome.wustl.edu	37	chr17	41234523	41234523	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aggctggctcccatgctgttCtaacacagcttctagttcag	9	12	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	41234523	41234523	C	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.4255	p.E1419K	0.947	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	76	0	0	70	12	14.63	-	-	-	T	41234523	C	T	41234523	3	4	978	1	0	0	0	0	1	0	0	0	1506	922	32	2	1454	2	BRCA1	17	41234523	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	959211	41234523	39960687	326	77656										
HOXB2	0	genome.wustl.edu	37	chr17	46620887	46620887	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctccccatccggcggctctCggtgctgcgtctgccgcttg	13	17	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	46620887	46620887	C	A	SNP	HOXB2	ENST00000330070	human	ensembl	69_37n	-1	known	missense	c.614	p.R205L	1.000	superfamily_Homeodomain-like,smart_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXB2	HGNC	ENSG00000173917	39	0	0	24	5	17.24	-	-	-	A	46620887	C	A	46620887	3	1	978	1	0	0	0	0	1	0	0	0	7352	884	31	3	460	3	HOXB2	17	46620887	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5386364	46620887	34574323	327	77657										
HEATR6	0	genome.wustl.edu	37	chr17	58156227	58156227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gattgcttcccgcggtgcctCccgcggctgcacggaaggcc	14	16	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	17	58156227	58156227	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	69_37n	-1	known	missense	c.49	p.E17K	0.001	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097	47	0	0	41	13	24.07	-	-	-	T	58156227	C	T	58156227	3	4	978	1	0	0	0	0	1	0	0	0	7084	864	30	2	3576	2	HEATR6	17	58156227	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11535340	58156227	23038983	328	77658										
CXXC1	0	genome.wustl.edu	37	chr18	47810867	47810867	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggtccttggcatcagccctCtctgggtgtttccatttatc	10	12	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	18	47810867	47810867	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	69_37n	-1	known	silent	c.1098	p.E366	0.831	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832	57	0	0	45	11	19.64	-	-	-	T	47810867	C	T	47810867	2	4	978	1	0	0	0	0	0	0	0	1	4128	912	32	2		2	CXXC1	18	47810867	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		47810867	30266381	329	77659										
NARS	0	genome.wustl.edu	37	chr18	55269589	55269589	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttaaaaaattggttttacctGatccgtataccagtaatagg	7	6	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	18	55269589	55269589	G	A	SNP	NARS	ENST00000256854	human	ensembl	69_37n	-1	known	nonsense	c.1513	p.Q505*	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS	HGNC	ENSG00000134440	21	0	0	16	5	23.81	-	-	-	A	55269589	G	A	55269589	4	1	978	1	0	0	0	0	0	1	0	0	10242	1299	45	2	141	2	NARS	18	55269589	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7458722	55269589	22807659	330	77660										
NFATC1	0	genome.wustl.edu	37	chr18	77227491	77227491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccgccatttcggaatcagagGataaccagccccgttcacgt	9	14	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	18	77227491	77227491	G	C	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	1	known	missense	c.2001	p.R667S	0.991	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	94	0	0	74	10	11.9	-	-	-	C	77227491	G	C	77227491	3	2	978	1	0	0	0	0	1	0	0	0	10433	1165	41	2	2123	2	NFATC1	18	77227491	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	21957902	77227491	849757	331	77661										
MED16	0	genome.wustl.edu	37	chr19	881682	881682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gttggtggccgataggatccGccatttgagaattgtgggct	15	7	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	881682	881682	G	A	SNP	MED16	ENST00000325464	human	ensembl	69_37n	-1	known	missense	c.1018	p.R340W	1.000	pfam_Mediator_Med16,superfamily_WD40_repeat_dom	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	73	0	0	93	18	16.22	-	-	-	A	881682	G	A	881682	3	1	978	1	0	0	0	0	1	0	0	0	9505	1086	38	1	1655	1	MED16	19	881682	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		881682	58247301	332	77662										
SBNO2	0	genome.wustl.edu	37	chr19	1119982	1119982	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cagccttgcccatcttggtgGagccggcattcttggctttg	12	12	2	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	1119982	1119982	G	C	SNP	SBNO2	ENST00000361757	human	ensembl	69_37n	-1	known	missense	c.1190	p.S397C	1.000	NULL	NULL	-	no_errors	SBNO2	HGNC	ENSG00000064932	47	0	0	72	10	12.2	-	-	-	C	1119982	G	C	1119982	3	2	978	1	0	0	0	0	1	0	0	0	13950	1174	41	2	2994	2	SBNO2	19	1119982	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	238300	1119982	58009001	333	77663										
MBD3	0	genome.wustl.edu	37	chr19	1592612	1592612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgcgggagcgccgggcactCccacctcttccgctccattg	11	18	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	1592612	1592612	C	T	SNP	MBD3	ENST00000156825	human	ensembl	69_37n	-1	known	missense	c.19	p.E7K	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655	9	0	0	5	4	44.44	-	-	-	T	1592612	C	T	1592612	3	4	978	1	0	0	0	0	1	0	0	0	9415	864	30	2	880	2	MBD3	19	1592612	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	472630	1592612	57536371	334	77664										
TLE2	0	genome.wustl.edu	37	chr19	3011063	3011063	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcttggcagcaagctggcaGaggtgactggccgagctggg	19	9	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	3011063	3011063	G	A	SNP	TLE2	ENST00000447365	human	ensembl	69_37n	-1	known	missense	c.95	p.S32F	0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE2	HGNC	ENSG00000065717	109	0	0	111	18	13.95	-	-	-	A	3011063	G	A	3011063	3	1	978	1	0	0	0	0	1	0	0	0	16034	929	33	2	1298	2	TLE2	19	3011063	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1418451	3011063	56117920	335	77665										
GPR108	0	genome.wustl.edu	37	chr19	6732543	6732543	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atggggtggccctggctgttGatgaagtagtagttgatctg	16	5	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	6732543	6732543	G	C	SNP	GPR108	ENST00000264080	human	ensembl	69_37n	-1	known	missense	c.951	p.I317M	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734	75	0	0	98	12	10.91	-	-	-	C	6732543	G	C	6732543	3	2	978	1	0	0	0	0	1	0	0	0	6674	1280	45	2	712	2	GPR108	19	6732543	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	3721480	6732543	52396440	336	77666										
MUC16	0	genome.wustl.edu	37	chr19	9033260	9033260	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gctagtctgcagcctgaataGaggtattccagactgctatt	10	9	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	9033260	9033260	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.36366	p.L12122	0.002	pfam_SEA,smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	59	0	0	53	10	15.62	-	-	-	A	9033260	G	A	9033260	2	1	978	1	0	0	0	0	0	0	0	1	10045	929	33	2		2	MUC16	19	9033260	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2300717	9033260	50095723	337	77667										
OR7E24	0	genome.wustl.edu	37	chr19	9361812	9361812	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaggtgtctcagaattcctCctcctgggactctcagagga	10	12	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	9361812	9361812	C	T	SNP	OR7E24	ENST00000456448	human	ensembl	69_37n	1	known	silent	c.93	p.L31	0.622	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521	49	0	0	58	7	10.77	-	-	-	T	9361812	C	T	9361812	2	4	978	1	0	0	0	0	0	0	0	1	11294	842	30	2		2	OR7E24	19	9361812	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	328552	9361812	49767171	338	77668										
DNM2	0	genome.wustl.edu	37	chr19	10887807	10887807	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctttcaggcctacggaccatCggtgtcatcaccaagcttga	9	13	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	10887807	10887807	C	T	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	1	known	silent	c.603	p.I201	0.727	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	53	0	0	69	13	15.85	-	-	-	T	10887807	C	T	10887807	2	4	978	1	0	0	0	0	0	0	0	1	4707	874	31	1		1	DNM2	19	10887807	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1525995	10887807	48241176	339	77669										
KANK2	0	genome.wustl.edu	37	chr19	11287291	11287291	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtttgatcctgatgccccctCagcagtgggtatgtgctgag	13	10	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	11287291	11287291	C	T	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.1747	p.E583K	0.192	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	53	0	0	49	15	23.44	-	-	-	T	11287291	C	T	11287291	3	4	978	1	0	0	0	0	1	0	0	0	8031	835	29	2	860	2	KANK2	19	11287291	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	399484	11287291	47841692	340	77670										
TMEM38A	0	genome.wustl.edu	37	chr19	16791268	16791268	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgtgtctgcttcctgcctgtGaaactcatcttcgtggccat	9	12	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	16791268	16791268	G	T	SNP	TMEM38A	ENST00000187762	human	ensembl	69_37n	1	known	silent	c.342	p.V114	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954	92	0	0	92	18	16.36	-	-	-	T	16791268	G	T	16791268	2	4	978	1	0	0	0	0	0	0	0	1	16254	1277	45	2		2	TMEM38A	19	16791268	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5503977	16791268	42337715	341	77671										
NWD1	0	genome.wustl.edu	37	chr19	16902356	16902356	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atatgtccagcatcaaagaaGaaacacctacctgtgccgtc	7	12	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	16902356	16902356	G	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	1	known	missense	c.3136	p.E1046Q	0.240	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	25	0	0	35	5	12.5	-	-	-	C	16902356	G	C	16902356	3	2	978	1	0	0	0	0	1	0	0	0	10854	943	33	2	2769	2	NWD1	19	16902356	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	111088	16902356	42226627	342	77672										
ZNF792	0	genome.wustl.edu	37	chr19	35449130	35449130	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctcagattggacctctgcctGaaggttttcccacattcgct	8	13	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	35449130	35449130	G	C	SNP	ZNF792	ENST00000404801	human	ensembl	69_37n	-1	known	missense	c.1629	p.F543L	0.960	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	34	0	0	32	5	13.51	-	-	-	C	35449130	G	C	35449130	3	2	978	1	0	0	0	0	1	0	0	0	18257	1281	45	2	273	2	ZNF792	19	35449130	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	18546774	35449130	23679853	343	77673										
KIRREL2	0	genome.wustl.edu	37	chr19	36353838	36353838	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgtttgtcagcctcagcctCtttctccgagcaaaagaacc	7	14	4	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	36353838	36353838	C	G	SNP	KIRREL2	ENST00000360202	human	ensembl	69_37n	1	known	missense	c.1625	p.S542C	0.962	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL2	HGNC	ENSG00000126259	24	0	0	47	11	18.97	-	-	-	G	36353838	C	G	36353838	3	3	978	1	0	0	0	0	1	0	0	0	8378	913	32	2	1675	2	KIRREL2	19	36353838	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	904708	36353838	22775145	344	77674										
CLIP3	0	genome.wustl.edu	37	chr19	36515468	36515468	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cttggccaccagtgccgcctCtgccttgtccagggacatgt	11	15	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	36515468	36515468	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	69_37n	-1	known	missense	c.748	p.E250K	1.000	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270	18	0	0	42	11	20.75	-	-	-	T	36515468	C	T	36515468	3	4	978	1	0	0	0	0	1	0	0	0	3564	922	32	2	927	2	CLIP3	19	36515468	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	161630	36515468	22613515	345	77675										
SERTAD1	0	genome.wustl.edu	37	chr19	40928882	40928882	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcctggtttgaggccctcaGaggctggtgcccaaagttca	14	11	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	40928882	40928882	G	A	SNP	SERTAD1	ENST00000357949	human	ensembl	69_37n	-1	known	missense	c.572	p.S191F	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD1	HGNC	ENSG00000197019	63	0	0	71	13	15.48	-	-	-	A	40928882	G	A	40928882	3	1	978	1	0	0	0	0	1	0	0	0	14208	942	33	2	142	2	SERTAD1	19	40928882	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4413414	40928882	18200101	346	77676										
LTBP4	0	genome.wustl.edu	37	chr19	41105378	41105378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaagtgtgcaggcccccagcGgtgcctgaacccagtgcctg	13	14	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	41105378	41105378	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	1	known	missense	c.257	p.R86Q	0.000	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	47	0	0	39	6	13.33	-	-	-	A	41105378	G	A	41105378	3	1	978	1	0	0	0	0	1	0	0	0	9142	1116	39	1	306	1	LTBP4	19	41105378	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	176496	41105378	18023605	347	77677										
CXCL17	0	genome.wustl.edu	37	chr19	42933115	42933115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tggaatgcttgtttggctttCtgtggtgcctttggtgtcct	13	7	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	42933115	42933115	C	T	SNP	CXCL17	ENST00000341918	human	ensembl	69_37n	-1	known	missense	c.281	p.R94K	0.295	NULL	NULL	-	no_errors	CXCL17	HGNC	ENSG00000189377	67	0	0	54	12	18.18	-	-	-	T	42933115	C	T	42933115	3	4	978	1	0	0	0	0	1	0	0	0	4115	913	32	2	82	2	CXCL17	19	42933115	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1827737	42933115	16195868	348	77678										
FOXA3	0	genome.wustl.edu	37	chr19	46375436	46375436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccctggggggctccctgcctCcccactgccctcaggacccc	10	22	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	46375436	46375436	C	G	SNP	FOXA3	ENST00000302177	human	ensembl	69_37n	1	known	missense	c.173	p.S58C	1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608	68	0	0	61	13	17.57	-	-	-	G	46375436	C	G	46375436	3	3	978	1	0	0	0	0	1	0	0	0	6037	855	30	2	179	2	FOXA3	19	46375436	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3442321	46375436	12753547	349	77679										
GYS1	0	genome.wustl.edu	37	chr19	49494595	49494595	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcatggaatccagtgtcctCttcagggccggggtgggggc	16	10	3	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	49494595	49494595	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	silent	c.264	p.K88	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	53	0	0	83	18	17.82	-	-	-	T	49494595	C	T	49494595	2	4	978	1	0	0	0	0	0	0	0	1	6963	912	32	2		2	GYS1	19	49494595	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3119159	49494595	9634388	350	77680										
GYS1	0	genome.wustl.edu	37	chr19	49494640	49494640	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agcagttccacctgggtcctCacgccctgctccgtgtacgg	11	16	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	49494640	49494640	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	silent	c.219	p.V73	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	63	0	0	77	15	16.3	-	-	-	T	49494640	C	T	49494640	2	4	978	1	0	0	0	0	0	0	0	1	6963	813	29	2		2	GYS1	19	49494640	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	45	49494640	9634343	351	77681										
MED25	0	genome.wustl.edu	37	chr19	50321680	50321680	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgattgagggtacggccaacCtgggaccctacttcgagggg	15	10	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	50321680	50321680	C	G	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	missense	c.82	p.L28V	1.000	pfam_Mediator_Med25_VWA	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	52	0	0	58	13	18.31	-	-	-	G	50321680	C	G	50321680	3	3	978	1	0	0	0	0	1	0	0	0	9514	680	24	4	84	4	MED25	19	50321680	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	827040	50321680	8807303	352	77682										
MED25	0	genome.wustl.edu	37	chr19	50335408	50335408	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atgcagctcatcccccagcaGctgctggtgagtggcggtgg	15	12	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	50335408	50335408	G	A	SNP	MED25	ENST00000312865	human	ensembl	69_37n	1	known	silent	c.1368	p.Q456	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973	27	0	0	50	6	10.71	-	-	-	A	50335408	G	A	50335408	2	1	978	1	0	0	0	0	0	0	0	1	9514	962	34	4		4	MED25	19	50335408	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	13728	50335408	8793575	353	77683										
ZNF649	0	genome.wustl.edu	37	chr19	52394623	52394623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtatggtttctctcctttgtGagctctctcgtgttcagtga	10	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	52394623	52394623	G	C	SNP	ZNF649	ENST00000354957	human	ensembl	69_37n	-1	known	missense	c.766	p.H256D	0.944	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093	58	0	0	88	12	12	-	-	-	C	52394623	G	C	52394623	3	2	978	1	0	0	0	0	1	0	0	0	18160	1290	45	2	755	2	ZNF649	19	52394623	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2059215	52394623	6734360	354	77684										
ZNF813	0	genome.wustl.edu	37	chr19	53994951	53994951	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcgtaattcatacggcaattCatactggagagaaaccttac	7	9	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	53994951	53994951	C	T	SNP	ZNF813	ENST00000396403	human	ensembl	69_37n	1	known	missense	c.1465	p.H489Y	0.656	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346	47	0	0	53	14	20.9	-	-	-	T	53994951	C	T	53994951	3	4	978	1	0	0	0	0	1	0	0	0	18268	826	29	2	1475	2	ZNF813	19	53994951	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1600328	53994951	5134032	355	77685										
GALP	0	genome.wustl.edu	37	chr19	56688525	56688525	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctcctcctcgtcctcttgctGagcctggcagagactccagc	9	17	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	56688525	56688525	G	A	SNP	GALP	ENST00000357330	human	ensembl	69_37n	1	known	silent	c.48	p.L16	0.734	NULL	pfam_Galanin	-	no_errors	GALP	HGNC	ENSG00000197487	46	0	0	55	8	12.7	-	-	-	A	56688525	G	A	56688525	2	1	978	1	0	0	0	0	0	0	0	1	6276	1277	45	2		2	GALP	19	56688525	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2693574	56688525	2440458	356	77686										
ZNF543	0	genome.wustl.edu	37	chr19	57835121	57835121	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggacagttggatgcagcccaGagaaccttgtatcaggaggt	14	8	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	57835121	57835121	G	A	SNP	ZNF543	ENST00000321545	human	ensembl	69_37n	1	known	silent	c.90	p.Q30	0.732	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	89	0	0	104	17	14.05	-	-	-	A	57835121	G	A	57835121	2	1	978	1	0	0	0	0	0	0	0	1	18072	933	33	2		2	ZNF543	19	57835121	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1146596	57835121	1293862	357	77687										
ZNF543	0	genome.wustl.edu	37	chr19	57840193	57840193	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaaaaccctatgaatgcaaaGaatgtggaaaagcctttagt	8	6	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	19	57840193	57840193	G	A	SNP	ZNF543	ENST00000321545	human	ensembl	69_37n	1	known	missense	c.1363	p.E455K	0.969	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	45	0	0	49	11	18.33	-	-	-	A	57840193	G	A	57840193	3	1	978	1	0	0	0	0	1	0	0	0	18072	943	33	2	1377	2	ZNF543	19	57840193	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5072	57840193	1288790	358	77688										
TGM3	0	genome.wustl.edu	37	chr20	2315917	2315917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acaaccccaccttgaccctgGaggtaatggggctccccatc	9	16	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	2315917	2315917	G	A	SNP	TGM3	ENST00000381458	human	ensembl	69_37n	1	known	missense	c.1798	p.E600K	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780	88	0	0	94	14	12.96	-	-	-	A	2315917	G	A	2315917	3	1	978	1	0	0	0	0	1	0	0	0	15926	1175	41	2	1840	2	TGM3	20	2315917	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		2315917	60709603	359	77689										
MACROD2	0	genome.wustl.edu	37	chr20	14032577	14032577	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ccatcattcaggatgcatctCtcatggttgaagaagtggtg	11	8	4	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	14032577	14032577	C	G	SNP	MACROD2	ENST00000462552	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	MACROD2	HGNC	ENSG00000172264	74	0	0	78	20	20.41	-	-	-	G	14032577	C	G	14032577	1	3	978	0	1	0	0	0	0	0	0	0	9213	928	32	2		2	MACROD2	20	14032577	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11716660	14032577	48992943	360	77690										
POLR3F	0	genome.wustl.edu	37	chr20	18448047	18448047	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acacgaggaagaaggcccctCggcctcagcagagcgctatc	12	14	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	18448047	18448047	C	T	SNP	POLR3F	ENST00000462997	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR3F	HGNC	ENSG00000132664	52	0	0	70	15	17.65	-	-	-	T	18448047	C	T	18448047	1	4	978	0	1	0	0	0	0	0	0	0	12307	899	31	1		1	POLR3F	20	18448047	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4415470	18448047	44577473	361	77691										
SEC23B	0	genome.wustl.edu	37	chr20	18523792	18523792	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggcccgatgtgctccggtgGctggaccgacaactcatccg	14	14	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	18523792	18523792	G	A	SNP	SEC23B	ENST00000262544	human	ensembl	69_37n	1	known	nonsense	c.1641	p.W547*	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310	34	0	0	53	8	13.11	-	-	-	A	18523792	G	A	18523792	4	1	978	1	0	0	0	0	0	1	0	0	14080	1212	42	4	1691	4	SEC23B	20	18523792	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	75745	18523792	44501728	362	77692										
THBD	0	genome.wustl.edu	37	chr20	23028944	23028944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	catctggcacctgtgcggctCgtggggaatgggcgcgaagc	17	11	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	23028944	23028944	C	T	SNP	THBD	ENST00000377103	human	ensembl	69_37n	-1	known	missense	c.1198	p.E400K	0.000	pirsf_CD93/CD141,smart_EGF-like_Ca-bd,smart_EGF-like	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726	63	0	0	72	16	18.18	-	-	-	T	23028944	C	T	23028944	3	4	978	1	0	0	0	0	1	0	0	0	15947	893	31	1	533	1	THBD	20	23028944	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	4505152	23028944	39996576	363	77693										
CEP250	0	genome.wustl.edu	37	chr20	34054796	34054796	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tttctgaacacacagttcttCaagggctacctgaaagggga	10	9	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	34054796	34054796	C	T	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	1	known	silent	c.498	p.F166	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	40	0	0	33	7	17.5	-	-	-	T	34054796	C	T	34054796	2	4	978	1	0	0	0	0	0	0	0	1	3281	825	29	2		2	CEP250	20	34054796	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	11025852	34054796	28970724	364	77694										
FAM65C	0	genome.wustl.edu	37	chr20	49226253	49226253	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcagtagtcctcgtacagctCatccacctgtggtgggcaca	11	13	1	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	49226253	49226253	C	T	SNP	FAM65C	ENST00000535356	human	ensembl	69_37n	-1	known	missense	c.433	p.E145K	1.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062	21	0	0	21	6	22.22	-	-	-	T	49226253	C	T	49226253	3	4	978	1	0	0	0	0	1	0	0	0	5646	835	29	2	2483	2	FAM65C	20	49226253	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	15171457	49226253	13799267	365	77695										
AURKA	0	genome.wustl.edu	37	chr20	54961556	54961556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aggaaattgctgagtcacgaGaacacgttttggacctccaa	10	9	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	54961556	54961556	G	C	SNP	AURKA	ENST00000312783	human	ensembl	69_37n	-1	known	missense	c.76	p.L26V	0.007	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	35	0	0	45	9	16.67	-	-	-	C	54961556	G	C	54961556	3	2	978	1	0	0	0	0	1	0	0	0	1225	942	33	2	1163	2	AURKA	20	54961556	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	5735303	54961556	8063964	366	77696										
GNAS	0	genome.wustl.edu	37	chr20	57428833	57428833	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gagtttgaccagcctgcccaGagaggctgcagtcaacttct	11	12	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	57428833	57428833	G	C	SNP	GNAS	ENST00000371100	human	ensembl	69_37n	1	putative	missense	c.513	p.Q171H	0.409	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	67	0	0	62	8	11.43	-	-	-	C	57428833	G	C	57428833	3	2	978	1	0	0	0	0	1	0	0	0	6562	942	33	2	1257	2	GNAS	20	57428833	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2467277	57428833	5596687	367	77697										
TAF4	0	genome.wustl.edu	37	chr20	60528535	60528535	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcccctcagtcaaagcaagtCacatggctgaacccacagtc	7	15	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	20	60528535	60528535	C	T	SNP	TAF4	ENST00000474089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	TAF4	HGNC	ENSG00000130699	20	0	0	40	13	24.53	-	-	-	T	60528535	C	T	60528535	1	4	978	0	1	0	0	0	0	0	0	0	15618	841	29	2		2	TAF4	20	60528535	RNA	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3099702	60528535	2496985	368	77698										
KRTAP21-2	0	genome.wustl.edu	37	chr21	32119357	32119357	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cacagccatatccacagccaGagccgtatccacagccatag	7	16	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	21	32119357	32119357	G	A	SNP	KRTAP21-2	ENST00000333892	human	ensembl	69_37n	-1	known	missense	c.164	p.S55F	0.004	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP21-2	HGNC	ENSG00000187026	87	0	0	69	21	23.33	-	-	-	A	32119357	G	A	32119357	3	1	978	1	0	0	0	0	1	0	0	0	8592	942	33	2	89	2	KRTAP21-2	21	32119357	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		32119357	16010538	369	77699										
GCFC1	0	genome.wustl.edu	37	chr21	34133372	34133372	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttaattcttttgtcgtacctGagggatattaattcctttcc	6	8	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	21	34133372	34133372	G	A	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	nonsense	c.973	p.Q325*	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	32	0	0	42	5	10.64	-	-	-	A	34133372	G	A	34133372	4	1	978	1	0	0	0	0	0	1	0	0	6339	1299	45	2	1954	2	GCFC1	21	34133372	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2014015	34133372	13996523	370	77700										
TFF3	0	genome.wustl.edu	37	chr21	43732333	43732333	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggcaagggtgctccgagcctCgcatcccccggccgggggca	16	16	0	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	21	43732333	43732333	C	A	SNP	TFF3	ENST00000398431	human	ensembl	69_37n	-1	novel	silent	c.282	p.A94	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TFF3	HGNC	ENSG00000160180	37	0	0	30	8	21.05	-	-	-	A	43732333	C	A	43732333	2	1	978	1	0	0	0	0	0	0	0	1	15900	899	31	3		3	TFF3	21	43732333	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9598961	43732333	4397562	371	77701										
MCM3AP	0	genome.wustl.edu	37	chr21	47697514	47697514	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gtctcagccacagtgcctatCagggtactgagggagagcac	13	11	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	21	47697514	47697514	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	silent	c.1785	p.L595	0.339	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	101	0	0	76	10	11.63	-	-	-	T	47697514	C	T	47697514	2	4	978	1	0	0	0	0	0	0	0	1	9459	813	29	2		2	MCM3AP	21	47697514	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	3965181	47697514	432381	372	77702										
CCT8L2	0	genome.wustl.edu	37	chr22	17071960	17071960	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctttgactattagggtgtccCacaccccttcctgggccaca	8	15	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	22	17071960	17071960	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	69_37n	-1	known	nonsense	c.1481	p.W494*	0.847	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	105	0	0	122	17	12.23	-	-	-	T	17071960	C	T	17071960	4	4	978	1	0	0	0	0	0	1	0	0	2990	595	21	4	196	4	CCT8L2	22	17071960	Nonsense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09		17071960	34232606	373	77703										
AP1B1	0	genome.wustl.edu	37	chr22	29750804	29750804	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcatcagcaccttcacagcaGagagcaccacagcggagttg	10	13	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	22	29750804	29750804	G	C	SNP	AP1B1	ENST00000357586	human	ensembl	69_37n	-1	known	missense	c.773	p.S258C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu	-	no_errors	AP1B1	HGNC	ENSG00000100280	78	0	0	59	16	21.33	-	-	-	C	29750804	G	C	29750804	3	2	978	1	0	0	0	0	1	0	0	0	732	942	33	2	2144	2	AP1B1	22	29750804	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	12678844	29750804	21553762	374	77704										
APOL2	0	genome.wustl.edu	37	chr22	36633125	36633125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	acctgcccaatacttgtgagGagctgcatccaggatcccat	9	13	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	22	36633125	36633125	G	A	SNP	APOL2	ENST00000451256	human	ensembl	69_37n	-1	putative	missense	c.185	p.S62F	0.000	NULL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335	20	0	0	8	9	52.94	-	-	-	A	36633125	G	A	36633125	3	1	978	1	0	0	0	0	1	0	0	0	808	1189	41	2		2	APOL2	22	36633125	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	6882321	36633125	14671441	375	77705										
L3MBTL2	0	genome.wustl.edu	37	chr22	41621831	41621831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gatacctgatgatctgtgtgGacggggggccctccacagat	14	10	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	22	41621831	41621831	G	C	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	missense	c.1390	p.D464H	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	48	0	0	56	12	17.65	-	-	-	C	41621831	G	C	41621831	3	2	978	1	0	0	0	0	1	0	0	0	8646	1174	41	2	1436	2	L3MBTL2	22	41621831	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4988706	41621831	9682735	376	77706										
L3MBTL2	0	genome.wustl.edu	37	chr22	41621914	41621914	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttcccggccaccttctgtcaGaagaatgacattgagctcac	8	13	3	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	22	41621914	41621914	G	C	SNP	L3MBTL2	ENST00000216237	human	ensembl	69_37n	1	known	missense	c.1473	p.Q491H	0.992	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395	49	0	0	67	21	23.86	-	-	-	C	41621914	G	C	41621914	3	2	978	1	0	0	0	0	1	0	0	0	8646	933	33	2	1519	2	L3MBTL2	22	41621914	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	83	41621914	9682652	377	77707										
MXRA5	0	genome.wustl.edu	37	chrX	3229058	3229058	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	agtgccatcttggtatatctGatacttctcagaggaggtgg	12	7	3	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	3229058	3229058	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	nonsense	c.7186	p.Q2396*	0.005	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	56	0	0	61	12	16.44	-	-	-	A	3229058	G	A	3229058	4	1	978	1	0	0	0	0	0	1	0	0	10075	1299	45	2	1304	2	MXRA5	23	3229058	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09		3229058	152041502	378	77708										
MAP7D2	0	genome.wustl.edu	37	chrX	20030534	20030534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tgatttcccatcaagggcatCcagatgaatgagtcccccag	9	12	1	4			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	20030534	20030534	C	A	SNP	MAP7D2	ENST00000379643	human	ensembl	69_37n	-1	known	missense	c.2005	p.D669Y	1.000	NULL	pfam_E-MAP-115	-	no_errors	MAP7D2	HGNC	ENSG00000184368	59	0	0	79	10	11.24	-	-	-	A	20030534	C	A	20030534	3	1	978	1	0	0	0	0	1	0	0	0	9339	855	30	2	324	2	MAP7D2	23	20030534	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	16801476	20030534	135240026	379	77709										
DMD	0	genome.wustl.edu	37	chrX	32360361	32360361	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gcttgcctacgcactgcattCagctcctctttcttcttctg	6	15	5	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	32360361	32360361	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	silent	c.5778	p.L1926	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	56	0	0	74	10	11.9	-	-	-	T	32360361	C	T	32360361	2	4	978	1	0	0	0	0	0	0	0	1	4616	813	29	2		2	DMD	23	32360361	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	12329827	32360361	122910199	380	77710										
FAM47C	0	genome.wustl.edu	37	chrX	37028317	37028317	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	atctctgcccggagcctccaGagactcgcgtatctcatctc	8	16	3	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	37028317	37028317	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.1834	p.E612K	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	111	0	0	97	15	13.39	-	-	-	A	37028317	G	A	37028317	3	1	978	1	0	0	0	0	1	0	0	0	5617	943	33	2	1836	2	FAM47C	23	37028317	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	4667956	37028317	118242243	381	77711										
FAM47C	0	genome.wustl.edu	37	chrX	37028695	37028695	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ctgagactggagtgtcccatCtccgcccagagcctcccaag	10	16	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	37028695	37028695	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	1	known	missense	c.2212	p.L738F	0.386	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	141	0	0	142	22	13.41	-	-	-	T	37028695	C	T	37028695	3	4	978	1	0	0	0	0	1	0	0	0	5617	913	32	2	2214	2	FAM47C	23	37028695	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	378	37028695	118241865	382	77712										
RPGR	0	genome.wustl.edu	37	chrX	38146013	38146013	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tccctccttctcttcttcctCttctctgtctccctcctctt	1	20	6	0			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	38146013	38146013	C	G	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.2239	p.E747Q	0.089	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	106	0	0	97	11	10.19	-	-	-	G	38146013	C	G	38146013	3	3	978	1	0	0	0	0	1	0	0	0	13634	922	32	2	1782	2	RPGR	23	38146013	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1117318	38146013	117124547	383	77713										
MED14	0	genome.wustl.edu	37	chrX	40573051	40573051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aactgtaagatttgctaactGaggaggaagatctgtggtta	12	4	1	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	40573051	40573051	G	A	SNP	MED14	ENST00000324817	human	ensembl	69_37n	-1	known	nonsense	c.631	p.Q211*	1.000	pfam_Mediator_Med14	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	53	0	0	63	8	11.27	-	-	-	A	40573051	G	A	40573051	4	1	978	1	0	0	0	0	0	1	0	0	9503	1299	45	2	3841	2	MED14	23	40573051	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2427038	40573051	114697509	384	77714										
SUV39H1	0	genome.wustl.edu	37	chrX	48565975	48565975	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cttctagcccttagaagtctGaggccagactgactgagggg	13	10	2	5			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	48565975	48565975	G	A	SNP	SUV39H1	ENST00000482260	human	ensembl	69_37n	1	known	rna	NULL	NULL	0.579	-	-	-	no_errors	SUV39H1	HGNC	ENSG00000101945	84	0	0	106	12	10.17	-	-	-	A	48565975	G	A	48565975	1	1	978	0	1	0	0	0	0	0	0	0	15503	1305	45	2		2	SUV39H1	23	48565975	RNA	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	7992924	48565975	106704585	385	77715										
MAGIX	0	genome.wustl.edu	37	chrX	49022629	49022629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	caacgaccagatcccgggttCcccggggccctggctagtgc	13	16	0	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	49022629	49022629	C	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	1	known	missense	c.896	p.S299F	0.978	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	45	0	0	40	7	14.89	-	-	-	T	49022629	C	T	49022629	3	4	978	1	0	0	0	0	1	0	0	0	9264	855	30	2	958	2	MAGIX	23	49022629	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	456654	49022629	106247931	386	77716										
CCNB3	0	genome.wustl.edu	37	chrX	50053243	50053243	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aaagtgggtccctcttccagGaggctttggtcttgcaagag	13	9	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	50053243	50053243	G	C	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	1	known	missense	c.2074	p.E692Q	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	46	0	0	47	7	12.96	-	-	-	C	50053243	G	C	50053243	3	2	978	1	0	0	0	0	1	0	0	0	2943	1175	41	2	2088	2	CCNB3	23	50053243	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	1030614	50053243	105217317	387	77717										
DGAT2L6	0	genome.wustl.edu	37	chrX	69421894	69421894	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	aagcagcgtaaaggttttgtGaagatggcactgcaaacagg	13	6	0	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	69421894	69421894	G	A	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	1	known	silent	c.627	p.V209	1.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	73	0	0	81	11	11.96	-	-	-	A	69421894	G	A	69421894	2	1	978	1	0	0	0	0	0	0	0	1	4495	1277	45	2		2	DGAT2L6	23	69421894	Silent	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	19368651	69421894	85848666	388	77718										
GJB1	0	genome.wustl.edu	37	chrX	70444262	70444262	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcccgcaagggctcgggcttCggccaccgcctctcacctga	11	18	1	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	70444262	70444262	C	T	SNP	GJB1	ENST00000361726	human	ensembl	69_37n	1	known	silent	c.705	p.F235	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin32	-	no_errors	GJB1	HGNC	ENSG00000169562	112	0	0	117	22	15.83	-	-	-	T	70444262	C	T	70444262	2	4	978	1	0	0	0	0	0	0	0	1	6459	883	31	1		1	GJB1	23	70444262	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	1022368	70444262	84826298	389	77719										
ERCC6L	0	genome.wustl.edu	37	chrX	71428226	71428226	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ggaaaggaaagcaatgatttGaacagtcttccctaatccca	8	9	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	71428226	71428226	G	A	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	nonsense	c.391	p.Q131*	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	62	0	0	61	9	12.86	-	-	-	A	71428226	G	A	71428226	4	1	978	1	0	0	0	0	0	1	0	0	5255	1299	45	2	3365	2	ERCC6L	23	71428226	Nonsense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	983964	71428226	83842334	390	77720										
SH3BGRL	0	genome.wustl.edu	37	chrX	80532647	80532647	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cccctgccacctcagattttCaatgaaagccagtatcgcgg	8	14	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	80532647	80532647	C	T	SNP	SH3BGRL	ENST00000373212	human	ensembl	69_37n	1	known	silent	c.210	p.F70	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171	45	0	0	58	11	15.94	-	-	-	T	80532647	C	T	80532647	2	4	978	1	0	0	0	0	0	0	0	1	14329	825	29	2		2	SH3BGRL	23	80532647	Silent	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	9104421	80532647	74737913	391	77721										
RPS6KA6	0	genome.wustl.edu	37	chrX	83389807	83389807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tacctgttaatttgatatgtCctatttcatcaagcaaaatg	5	7	2	1			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	83389807	83389807	C	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	69_37n	-1	known	missense	c.629	p.G210E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	111	0	0	102	20	16.39	-	-	-	T	83389807	C	T	83389807	3	4	978	1	0	0	0	0	1	0	0	0	13741	855	30	2	1668	2	RPS6KA6	23	83389807	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	2857160	83389807	71880753	392	77722										
DACH2	0	genome.wustl.edu	37	chrX	86082772	86082772	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	ttgttttttctgtgcagcctGaacactgatgccggaactcc	9	11	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	86082772	86082772	G	C	SNP	DACH2	ENST00000373131	human	ensembl	69_37n	1	known	nonstop	c.1715	p.*572S	0.996	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	36	0	0	40	7	14.89	-	-	-	C	86082772	G	C	86082772	4	2	978	1	0	0	0	0	0	0	0	0	4253	1285	45	2	1800	2	DACH2	23	86082772	Nonstop_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	2692965	86082772	69187788	393	77723										
RGAG1	0	genome.wustl.edu	37	chrX	109695735	109695735	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	tcaggaacgatgttcacggaGaaaatgacaaccacagcttc	9	10	2	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	109695735	109695735	G	C	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	1	known	missense	c.1890	p.E630D	0.002	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	28	0	0	43	5	10.42	-	-	-	C	109695735	G	C	109695735	3	2	978	1	0	0	0	0	1	0	0	0	13357	933	33	2	1892	2	RGAG1	23	109695735	Missense_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	23612963	109695735	45574825	394	77724										
MAGEA8	0	genome.wustl.edu	37	chrX	149014002	149014002	+	Nonstop_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	gggagaggagaaaggagtttGagcaggagttgcagctaggg	20	3	0	3			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	149014002	149014002	G	C	SNP	MAGEA8	ENST00000286482	human	ensembl	69_37n	1	known	nonstop	c.956	p.*319S	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	130	0	0	153	27	15	-	-	-	C	149014002	G	C	149014002	4	2	978	1	0	0	0	0	0	0	0	0	9240	1285	45	2	958	2	MAGEA8	23	149014002	Nonstop_Mutation	SNP	G	TCGA-PE-A5DE-01A-11D-A27P-09	39318267	149014002	6256558	395	77725										
F8	0	genome.wustl.edu	37	chrX	154159467	154159467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.623409669211196	245	2.97381324002296e-101	4.35909435597443	5.05681413061092	4.00878691725653	1.36162844945549e-06	0.000121061147597043	189	cctgactcaggggtaaatacCatgtccccactgtgatggag	11	11	1	2			TCGA-PE-A5DE-01A-11D-A27P-09	TCGA-PE-A5DE-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b59ec69e-e93a-4415-9c18-9d139b852919	7ff240ac-2b8f-4e5c-8184-980b3f9322a5	X	154159467	154159467	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.2598	p.M866I	0.024	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	30	0	0	46	7	12.96	-	-	-	T	154159467	C	T	154159467	3	4	978	1	0	0	0	0	1	0	0	0	5387	594	21	4	4537	4	F8	23	154159467	Missense_Mutation	SNP	C	TCGA-PE-A5DE-01A-11D-A27P-09	5145465	154159467	1111093	396	77726										
